Sequence N-term cleavage window C-term cleavage window Amino acid before First amino acid Second amino acid Second last amino acid Last amino acid Amino acid after A Count R Count N Count D Count C Count Q Count E Count G Count H Count I Count L Count K Count M Count F Count P Count S Count T Count W Count Y Count V Count U Count O Count Length Missed cleavages Mass Proteins Leading razor protein Start position End position Gene names Protein names Unique (Groups) Unique (Proteins) Charges PEP Score Identification type CytoEx_1 Identification type CytoEx_2 Identification type NucEx_1 Identification type NuEx_2 Identification type NuPe_1 Identification type NuPe_2 Experiment CytoEx_1 Experiment CytoEx_2 Experiment NucEx_1 Experiment NuEx_2 Experiment NuPe_1 Experiment NuPe_2 Ratio H/L Ratio H/L normalized Ratio H/L variability [%] Ratio H/L count Ratio H/L iso-count Ratio H/L type Ratio H/L CytoEx_1 Ratio H/L normalized CytoEx_1 Ratio H/L variability [%] CytoEx_1 Ratio H/L count CytoEx_1 Ratio H/L iso-count CytoEx_1 Ratio H/L type CytoEx_1 Ratio H/L CytoEx_2 Ratio H/L normalized CytoEx_2 Ratio H/L variability [%] CytoEx_2 Ratio H/L count CytoEx_2 Ratio H/L iso-count CytoEx_2 Ratio H/L type CytoEx_2 Ratio H/L NucEx_1 Ratio H/L normalized NucEx_1 Ratio H/L variability [%] NucEx_1 Ratio H/L count NucEx_1 Ratio H/L iso-count NucEx_1 Ratio H/L type NucEx_1 Ratio H/L NuEx_2 Ratio H/L normalized NuEx_2 Ratio H/L variability [%] NuEx_2 Ratio H/L count NuEx_2 Ratio H/L iso-count NuEx_2 Ratio H/L type NuEx_2 Ratio H/L NuPe_1 Ratio H/L normalized NuPe_1 Ratio H/L variability [%] NuPe_1 Ratio H/L count NuPe_1 Ratio H/L iso-count NuPe_1 Ratio H/L type NuPe_1 Ratio H/L NuPe_2 Ratio H/L normalized NuPe_2 Ratio H/L variability [%] NuPe_2 Ratio H/L count NuPe_2 Ratio H/L iso-count NuPe_2 Ratio H/L type NuPe_2 Intensity Intensity L Intensity H Intensity CytoEx_1 Intensity L CytoEx_1 Intensity H CytoEx_1 Intensity CytoEx_2 Intensity L CytoEx_2 Intensity H CytoEx_2 Intensity NucEx_1 Intensity L NucEx_1 Intensity H NucEx_1 Intensity NuEx_2 Intensity L NuEx_2 Intensity H NuEx_2 Intensity NuPe_1 Intensity L NuPe_1 Intensity H NuPe_1 Intensity NuPe_2 Intensity L NuPe_2 Intensity H NuPe_2 Reverse Potential contaminant id Protein group IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count AAAAAAAAAAAAAAAGAGAGAK QSRFQVDLVSENAGRAAAAAAAAAAAAAAA AAAAAAAAGAGAGAKQTPADGEASGESEPA R A A A K Q 18 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 22 0 1595.838 P55011;G3XAL9 P55011 93 114 SLC12A2 Solute carrier family 12 member 2 yes no 2;3 4.5796E-40 141.73 By MS/MS By matching 2 1 1.2757 1.1158 19.524 3 Median 1.066 1.0619 27.314 2 1 Median 1.2757 1.1158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14144000 6339100 7805100 11923000 5338200 6584700 2221300 1001000 1220400 0 0 0 0 0 0 0 0 0 0 0 0 0 2490 0 0;1;2 0;1 0 1 AAAAAAAAAAGAAGGR ______________________________ AAAAAAAAAGAAGGRGSGPGRRRHLVPGAG M A A G R G 12 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 1197.6214 Q86U42 Q86U42 2 17 PABPN1 Polyadenylate-binding protein 2 yes yes 2 3.0949E-14 138.66 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 4 2 0.98757 0.98486 16.513 11 Median 1.0507 1.0207 17.437 2 0 Median 0.67206 0.62762 NaN 1 0 Median 0.98502 1.0311 6.4848 2 1 Median NaN NaN NaN 0 0 Median 0.93947 0.93949 10.998 4 1 Median 1.1313 0.98324 3.4404 2 0 Median 79053000 38942000 40111000 9676000 4909400 4766600 1303400 710220 593180 20295000 10119000 10176000 0 0 0 46248000 22494000 23754000 1530400 709380 820990 1 3270 1 3;4;5;6;7;8;9;10;11;12;13 2;3;4;5;6;7;8;9;10;11;12;13 7 12 AAAAAAAAAVSR TTSSRVLRGGRDRGRAAAAAAAAAVSRRRK RGRAAAAAAAAAVSRRRKAEYPRRRRSSPS R A A S R R 9 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 12 0 999.54614 A0A0A6YYC7;Q96JP5 A0A0A6YYC7 59 70 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 2 5.2899E-06 99.802 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1 1.1173 1.0748 33.522 6 Median 1.0752 1.0642 NaN 1 0 Median 1.9921 1.7184 NaN 1 0 Median 1.835 1.9234 NaN 1 0 Median 0.97605 0.83215 NaN 1 0 Median 1.019 1.0855 NaN 1 0 Median 1.1611 0.95551 NaN 1 0 Median 6560700 2851900 3708800 1892600 948680 943930 1457200 606950 850240 1218300 368240 850010 549450 244690 304760 995060 473080 521980 448130 210240 237900 2 202 2 14;15;16;17;18;19;20 14;15;16;17 15 4 AAAAAAALQAK TILRQARNHKLRVDKAAAAAAALQAKSDEK RVDKAAAAAAALQAKSDEKAAVAGKKPVVG K A A A K S 8 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 0 955.54508 P36578;H3BM89;H3BU31 P36578 354 364 RPL4 60S ribosomal protein L4 yes no 2 4.2039E-05 120.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 5 5 1.2018 1.0846 11.62 17 Median 1.109 1.0203 NaN 1 0 Median 1.4989 1.2877 22.115 3 0 Median 1.0782 1.0449 NaN 1 0 Median 1.1618 1.0314 3.4812 2 0 Median 1.1012 1.1606 10.599 5 0 Median 1.3019 1.1189 6.9593 5 0 Median 182510000 81611000 100890000 37851000 18028000 19822000 75584000 32807000 42778000 10458000 4822900 5635400 5329200 2524400 2804800 26616000 11774000 14842000 26666000 11655000 15011000 3 2260 3 21;22;23;24;25;26;27;28;29;30;31;32;33;34;35;36;37 18;19;20;21;22;23;24;25;26;27;28;29;30;31;32;33;34;35;36;37;38;39;40;41 27 23 AAAAAAGAASGLPGPVAQGLK ______________________________ GAASGLPGPVAQGLKEALVDTLTGILSPVQ M A A L K E 9 0 0 0 0 1 0 4 0 0 2 1 0 0 2 1 0 0 0 1 0 0 21 0 1747.9581 Q96P70 Q96P70 2 22 IPO9 Importin-9 yes yes 2 1.4972E-13 88.441 By MS/MS 1 0.79273 0.76798 NaN 1 Median 0.79273 0.76798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9653100 5476300 4176800 9653100 5476300 4176800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3711 4 38 42;43 42 2 AAAAAAGAGPEMVR ______________________________ MAAAAAAGAGPEMVRGQVFDVGPRYTNLSY M A A V R G 7 1 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 1 0 0 14 0 1241.6187 P28482 P28482 2 15 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 6.5956E-09 145.89 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 0.94223 0.88388 12.84 6 Median 0.97322 0.97496 16.008 2 1 Median 0.94749 0.82654 NaN 1 0 Median 0.94833 0.9768 11.997 2 0 Median 0.937 0.80744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125470000 63085000 62388000 89838000 42985000 46853000 11485000 7037800 4447300 20896000 11362000 9533100 3254400 1699500 1554900 0 0 0 0 0 0 5 2166 5;6 39;40;41;42;43;44;45;46 44;45;46;47;48;49;50;51;52;53;54;55 44 918 12 AAAAAAGEAR ______________________________ ______________________________ M A A A R R 7 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 857.43553 P09417;B7Z415;D6RGG7;D6RHJ7 P09417 2 11 QDPR Dihydropteridine reductase yes no 2 0.0027636 59.35 By MS/MS 1 1.0107 0.95329 NaN 1 Median 1.0107 0.95329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2550700 1246800 1303900 2550700 1246800 1303900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 1914 7 47 56 56 1 AAAAAATAAAAASIR ______________________________ AAAAAATAAAAASIRERQTVALKRMLNFNV M A A I R E 11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 15 0 1256.6837 Q8WVM8;G3V4I1;G3V5F3;J3KNG4;G3V3K9 Q8WVM8 2 16 SCFD1 Sec1 family domain-containing protein 1 yes no 2 0.0011505 42.743 By MS/MS By MS/MS 1 1 0.88658 0.77283 9.5713 2 Median 0.88025 0.82694 NaN 1 0 Median 0.89297 0.72225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2672600 1358200 1314400 1656000 881970 774000 1016700 476250 540430 0 0 0 0 0 0 0 0 0 0 0 0 7 3503 8 48;49 57;58;59 57 3 AAAAAATAPPSPGPAQPGPR PPAPVAAAAPARAPRAAAAAATAPPSPGPA ATAPPSPGPAQPGPRAQRAAPLAAPPPAPA R A A P R A 8 1 0 0 0 1 0 2 0 0 0 0 0 0 6 1 1 0 0 0 0 0 20 0 1754.9064 Q6SPF0 Q6SPF0 151 170 SAMD1 Atherin yes yes 2 1.0946E-10 77.597 By MS/MS 1 0.44188 0.47283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44188 0.47283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2542200 2008300 533940 0 0 0 0 0 0 2542200 2008300 533940 0 0 0 0 0 0 0 0 0 8 3182 9 50 60 60 1 AAAAAGTATSQR ______________________________ ______________________________ M A A Q R F 6 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 12 0 1074.5418 Q9Y2Z0 Q9Y2Z0 2 13 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 4.1915E-06 105.52 By MS/MS By MS/MS 2 1 1.2908 1.2976 33.702 3 Median 1.5127 1.5185 22.226 2 2 Median 1.0497 0.90605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7801800 3485100 4316700 4825500 2058200 2767300 2976300 1426900 1549400 0 0 0 0 0 0 0 0 0 0 0 0 9 4398 10 51;52;53 61;62;63;64 63 4 AAAAALSQQQSLQER SASSSASPGRSQSPRAAAAALSQQQSLQER AAAAALSQQQSLQERLRLREERKQQEELMK R A A E R L 5 1 0 0 0 4 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 15 0 1570.8063 Q8WUQ7 Q8WUQ7 129 143 CACTIN Cactin yes yes 2 0.00023797 72.006 By MS/MS 1 1.0915 0.89744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0915 0.89744 NaN 1 0 Median 493820 259970 233850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 493820 259970 233850 10 3494 11 54 65 65 1 AAAAAMAEQESAR ______________________________ ______________________________ M A A A R N 7 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 13 0 1275.5877 Q7L5D6 Q7L5D6 2 14 GET4 Golgi to ER traffic protein 4 homolog yes yes 2 0.013987 65.347 By MS/MS 1 0.97996 0.81886 NaN 1 Median NaN NaN NaN 0 0 Median 0.97996 0.81886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3598600 1666600 1932100 0 0 0 3598600 1666600 1932100 0 0 0 0 0 0 0 0 0 0 0 0 11 3225 12 55 66 66 0 AAAAASAAGPGGLVAGKEEK ______________________________ SAAGPGGLVAGKEEKKKAGGGVLNRLKARR K A A E K K 8 0 0 0 0 0 2 4 0 0 1 2 0 0 1 1 0 0 0 1 0 0 20 1 1724.9057 A6NIH7 A6NIH7 8 27 UNC119B Protein unc-119 homolog B yes yes 3 6.8487E-08 60.564 By MS/MS By matching By MS/MS 2 1 1 0.93743 0.88627 6.8714 4 Median 0.90841 0.88599 10.914 2 2 Median NaN NaN NaN 0 0 Median 0.90037 0.91653 NaN 1 0 Median 0.97601 0.85701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9627200 5174300 4452900 7089300 3918600 3170700 0 0 0 1064700 527660 536990 1473300 728080 745220 0 0 0 0 0 0 12 520 13 56;57;58;59 67;68;69 69 3 AAAAASAPQQLSDEELFSQLR ______________________________ APQQLSDEELFSQLRRYGLSPGPVTESTRP M A A L R R 6 1 0 1 0 3 2 0 0 0 3 0 0 1 1 3 0 0 0 0 0 0 21 0 2202.0917 Q9Y2U8 Q9Y2U8 2 22 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 7.1284E-09 55.383 By MS/MS 1 0.75374 0.80042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75374 0.80042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10288000 5598700 4689200 0 0 0 0 0 0 10288000 5598700 4689200 0 0 0 0 0 0 0 0 0 13 4392 14 60 70 70 1 AAAAASASQDELNQLER ______________________________ AAASASQDELNQLERVFLRLGHAETDEQLQ M A A E R V 6 1 1 1 0 2 2 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 17 0 1743.8388 Q5VYK3;R4GMY1 Q5VYK3 2 18 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 1.2189E-31 147.87 By MS/MS 1 0.86632 0.81376 NaN 1 Median 0.86632 0.81376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9898400 4980800 4917500 9898400 4980800 4917500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 3116 15 61 71 71 1 AAAAASHLNLDALR ______________________________ MAAAAASHLNLDALREVLECPICMESFTEE M A A L R E 6 1 1 1 0 0 0 0 1 0 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1392.7474 Q13049;Q5JVY0 Q13049 2 15 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes no 2 0.011123 60.434 By MS/MS By matching By matching 1 1 3 0.85882 0.76868 18.208 5 Median 0.75993 0.76868 NaN 1 0 Median 0.9734 0.84154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85882 0.7282 25.27 3 0 Median 4671300 2355100 2316200 1981400 1079000 902470 1860300 863560 996770 0 0 0 0 0 0 0 0 0 829540 412620 416920 15 2782 16 62;63;64;65;66 72 72 0 AAAAAWEEPSSGNGTAR ______________________________ AAAWEEPSSGNGTARAGPRKRGGPAGRKRE K A A A R A 6 1 1 0 0 0 2 2 0 0 0 0 0 0 1 2 1 1 0 0 0 0 17 0 1644.7492 Q9P258 Q9P258 6 22 RCC2 Protein RCC2 yes yes 2 8.1583E-12 137.17 By MS/MS 1 0.93225 0.799 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93225 0.799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4891500 2609700 2281800 0 0 0 0 0 0 0 0 0 4891500 2609700 2281800 0 0 0 0 0 0 16 4214 17 67 73;74 74 2 AAAADSFSGGPAGVR ______________________________ AAAADSFSGGPAGVRLPRSPPLKESM____ M A A V R L 5 1 0 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 0 0 15 0 1332.6422 I3L2E0;A0A3B3ISX4;Q96E14 I3L2E0 2 16 RMI2 RecQ-mediated genome instability protein 2 yes no 2 1.7828E-26 197.21 By MS/MS By MS/MS 1 1 0.83613 0.74652 11.84 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67863 0.68656 NaN 1 0 Median 1.0302 0.8117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20549000 11758000 8791100 0 0 0 0 0 0 18808000 10916000 7891700 1741400 842100 899300 0 0 0 0 0 0 17 430 18 68;69 75;76;77 75 3 AAAAEGVLATR ______________________________ ______________________________ M A A T R S 5 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1028.5615 Q6QNY1 Q6QNY1 2 12 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 yes yes 2 0.00015976 82.287 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.337 1.185 11.658 4 Median 1.0536 1.0093 NaN 1 0 Median 1.5281 1.2724 NaN 1 0 Median 1.1697 1.1037 NaN 1 1 Median 1.5733 1.2845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28338000 13328000 15010000 24955000 11970000 12985000 950510 338490 612020 2163100 929900 1233200 269840 89915 179930 0 0 0 0 0 0 18 3178 19 70;71;72;73 78;79;80;81;82 78 5 AAAAELSLLEK ______________________________ ______________________________ M A A E K S 4 0 0 0 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1114.6234 O43324;D6RBD7;C9J1V9 O43324 2 12 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.00016676 90.906 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.0569 0.97911 15.652 7 Median 1.0456 0.99776 11.662 2 0 Median 0.99276 0.8522 19.632 2 0 Median 1.0569 0.99172 NaN 1 0 Median 1.0493 0.86917 NaN 1 0 Median 1.1763 1.2074 NaN 1 0 Median NaN NaN NaN 0 0 Median 93396000 42149000 51246000 69482000 31340000 38141000 10720000 4615500 6104500 9358200 4318600 5039600 3018000 1454700 1563300 817980 420400 397580 0 0 0 19 1566 20 74;75;76;77;78;79;80 83;84;85;86;87 84 5 AAAAKPNNLSLVVHGPGDLR ______________________________ PNNLSLVVHGPGDLRLENYPIPEPGPNEVL M A A L R L 4 1 2 1 0 0 0 2 1 0 3 1 0 0 2 1 0 0 0 2 0 0 20 1 1999.0963 Q00796;H0YKB3 Q00796 2 21 SORD Sorbitol dehydrogenase yes no 3 4.0694E-19 98.169 By MS/MS By matching By MS/MS By matching 2 2 3 1 0.81493 0.79762 34.675 8 Median 0.79275 0.83943 9.274 2 1 Median 0.8908 0.82838 12.975 2 0 Median 0.7451 0.80927 59.028 3 1 Median 0.825 0.72594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128990000 75373000 53618000 100070000 57710000 42362000 4839600 2670700 2169000 23289000 14585000 8703300 789950 406270 383680 0 0 0 0 0 0 20 2679 21 81;82;83;84;85;86;87;88 88;89;90;91;92 88 5 AAAAMAAAAGGGAGAAR ______________________________ AAMAAAAGGGAGAARSLSRFRGCLAGALLG M A A A R S 11 1 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 17 0 1314.6463 Q9NX46 Q9NX46 2 18 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 2 3.6821E-18 120.09 By MS/MS 1 0.90731 0.89959 NaN 1 Median 0.90731 0.89959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6217300 3577100 2640200 6217300 3577100 2640200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 4157 22 89 93 93 1 AAAAPFQTSQASASAPR GRPPIATFSANPEAKAAAAPFQTSQASASA AAPFQTSQASASAPRHQPASASSTAASPAH K A A P R H 7 1 0 0 0 2 0 0 0 0 0 0 0 1 2 3 1 0 0 0 0 0 17 0 1630.8063 Q96L91 Q96L91 1519 1535 EP400 E1A-binding protein p400 yes yes 3 0.00039129 49.463 By MS/MS 1 0.90723 1.001 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90723 1.001 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2674700 1412400 1262300 0 0 0 0 0 0 2674700 1412400 1262300 0 0 0 0 0 0 0 0 0 22 3700 23 90 94 94 1 AAAAPGASPSPGGDAAWSEAGPGPRPLAR DANKASARASREGGRAAAAPGASPSPGGDA AAWSEAGPGPRPLARSASPPKAKNLNGGLR R A A A R S 9 2 0 1 0 0 1 5 0 0 1 0 0 0 6 3 0 1 0 0 0 0 29 1 2641.2997 P52701;F8WAX8;F8W7G9 P52701 34 62 MSH6 DNA mismatch repair protein Msh6 yes no 3 8.9433E-60 151.01 By MS/MS By MS/MS By MS/MS 1 1 3 0.44406 0.43777 11.295 5 Median 0.38837 0.41533 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.29255 0.3558 NaN 1 0 Median 0.46911 0.48247 5.2436 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150010000 106390000 43617000 75084000 53307000 21778000 0 0 0 68113000 48834000 19279000 6808800 4249200 2559600 0 0 0 0 0 0 23 2453 24 91;92;93;94;95 95;96;97;98 96 4 AAAAPVAADDDERR ______________________________ MAAAAPVAADDDERRRRPGADSISSYEAQI M A A R R R 6 2 0 3 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 14 1 1426.6801 B4DHR0;Q9H5N1 B4DHR0 2 15 RABEP2 Rab GTPase-binding effector protein 2 yes no 2 0.0006341 53.683 By MS/MS 1 0.64334 0.63384 NaN 1 Median 0.64334 0.63384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4091600 2263100 1828500 4091600 2263100 1828500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 591 25 96 99 99 1 AAAAQLSLTQLSSGNPVYEK ______________________________ LSLTQLSSGNPVYEKYYRQVDTGNTGRVLA M A A E K Y 4 0 1 0 0 2 1 1 0 0 3 1 0 0 1 3 1 0 1 1 0 0 20 0 2047.0586 P42566;B1AUU8 P42566 2 21 EPS15 Epidermal growth factor receptor substrate 15 yes no 2 2.3016E-05 45.915 By MS/MS 1 0.7797 0.77427 NaN 1 Median 0.7797 0.77427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2335100 1252500 1082600 2335100 1252500 1082600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 580 26 97 100 100 1 AAAASAAEAGIATTGTEDSDDALLK SMEEQRQRQEEEARRAAAASAAEAGIATTG IATTGTEDSDDALLKMTISQQEFGRTGLPD R A A L K M 9 0 0 3 0 0 2 2 0 1 2 1 0 0 0 2 3 0 0 0 0 0 25 0 2319.1078 P55036;H0Y3Y9 P55036 238 262 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2;3 6.2534E-13 58.015 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.92247 0.8869 16.325 6 Median 1.059 0.99826 21.522 2 0 Median 0.90004 0.81752 NaN 1 0 Median 0.89634 0.88434 5.2035 2 0 Median 1.3219 1.1788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26675000 10778000 15897000 14223000 6325500 7897600 268200 130460 137750 11805000 4120100 7684700 379170 202010 177160 0 0 0 0 0 0 26 2491 27 98;99;100;101;102;103 101;102;103 101 3 AAAASVTGR ______________________________ ______________________________ M A A G R V 4 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 9 0 802.42972 Q8NHH1 Q8NHH1 2 10 TTLL11 Tubulin polyglutamylase TTLL11 yes yes 2 0.025305 49.358 By MS/MS 1 0.05148 0.037179 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.05148 0.037179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1099700 1066000 33647 0 0 0 0 0 0 0 0 0 1099700 1066000 33647 0 0 0 0 0 0 27 3443 28 104 104 104 1 AAAAVGAGHGAGGPGAASSSGGAR ______________________________ GAGGPGAASSSGGAREGARVAALCLLWYAL M A A A R E 9 1 0 0 0 0 0 8 1 0 0 0 0 0 1 3 0 0 0 1 0 0 24 0 1863.8936 Q96K37 Q96K37 2 25 SLC35E1 Solute carrier family 35 member E1 yes yes 3 2.1986E-24 108.25 By MS/MS By MS/MS 1 1 0.91304 0.83572 2.5751 2 Median 0.81659 0.82064 NaN 1 0 Median 1.0209 0.85107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10638000 5414500 5223600 4283200 2371200 1912000 6354900 3043300 3311600 0 0 0 0 0 0 0 0 0 0 0 0 28 3689 29 105;106 105;106;107 107 3 AAAAVSESWPELELAER ______________________________ AAVSESWPELELAERERRRELLLTGPGLEE M A A E R E 5 1 0 0 0 0 4 0 0 0 2 0 0 0 1 2 0 1 0 1 0 0 17 0 1827.9003 Q8N1G4 Q8N1G4 2 18 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 4.747E-07 89.548 By MS/MS By matching 1 1 0.88114 0.84126 8.5612 2 Median 0.88271 0.89376 NaN 1 0 Median 0.87956 0.79184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1927000 1027900 899130 1787600 952550 835090 139380 75345 64039 0 0 0 0 0 0 0 0 0 0 0 0 29 3359 30 107;108 108;109 109 2 AAAAVVAAAAR TAGTVAAMAATPSARAAAAVVAAAARTGSE PSARAAAAVVAAAARTGSEARVSKAALATK R A A A R T 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 11 0 940.54541 Q8WWH5 Q8WWH5 39 49 TRUB1 Probable tRNA pseudouridine synthase 1 yes yes 2 0.00013488 98.299 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.145 1.0094 13.947 6 Median 0.90713 0.91025 NaN 1 0 Median 1.2288 1.0572 12.39 2 0 Median 0.94229 0.99936 NaN 1 0 Median 1.1577 1.0196 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5606 1.3368 NaN 1 0 Median 9659900 4510900 5149000 2448400 1392000 1056400 4237100 1710100 2527000 1220300 594570 625720 743930 355670 388260 0 0 0 1010200 458500 551700 30 3508 31 109;110;111;112;113;114 110;111;112;113;114;115;116 113 7 AAAAVVEFQR ______________________________ ______________________________ M A A Q R A 4 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1060.5665 O00231;J3QRY4 O00231 2 11 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.00037937 121.62 By MS/MS By matching By MS/MS 4 2 1 1.2034 1.0484 19.416 7 Median 1.1512 1.1065 24.697 4 0 Median 1.2035 1.0347 1.1345 2 0 Median 1.2916 1.2962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99223000 43917000 55307000 87132000 38708000 48425000 7460300 3229800 4230600 4630600 1979200 2651500 0 0 0 0 0 0 0 0 0 31 1448 32 115;116;117;118;119;120;121 117;118;119;120;121;122 122 5 AAAAVVVPAEWIK ______________________________ ______________________________ M A A I K N 5 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 0 3 0 0 13 0 1323.7551 Q8NI27;F2Z2V2 Q8NI27 2 14 THOC2 THO complex subunit 2 yes no 2 3.4964E-05 91.658 By MS/MS By MS/MS By matching 3 1 1 0.84905 0.86626 2.8689 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76617 0.84546 4.1695 2 0 Median 0.91373 0.82708 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95024 0.81993 NaN 1 0 Median 14738000 7995000 6743100 0 0 0 0 0 0 12258000 6758800 5498800 2111300 1053700 1057700 0 0 0 369120 182530 186590 32 3448 33 122;123;124;125;126 123;124;125;126;127 124 5 AAADGGGPGGASVGTEEDGGGVGHR ______________________________ ASVGTEEDGGGVGHRTVYLFDRREKESELG M A A H R T 4 1 0 2 0 0 2 10 1 0 0 0 0 0 1 1 1 0 0 2 0 0 25 0 2136.9421 A6NHR9 A6NHR9 2 26 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 4.717E-91 231.71 By MS/MS By MS/MS 2 2 0.89026 0.87189 18.445 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73126 0.79807 2.8115 2 0 Median 1.1924 1.0484 16.376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38428000 20584000 17844000 0 0 0 0 0 0 31443000 17423000 14020000 6985100 3161300 3823800 0 0 0 0 0 0 33 518 34 127;128;129;130 128;129;130;131;132;133;134 131 7 AAADTLQGPMQAAYR SKLLKSKNLTDAIARAAADTLQGPMQAAYR AAADTLQGPMQAAYREAFQSVVLPAFEKSC R A A Y R E 5 1 0 1 0 2 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 15 0 1562.7511 Q6P2E9;I3L2F4 Q6P2E9 1101 1115 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 1.706E-09 118.04 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.78622 0.84577 14.811 4 Median 0.97729 0.91734 NaN 1 0 Median 0.63223 0.77979 NaN 1 0 Median 0.63251 0.69549 NaN 1 0 Median 1.0847 0.95825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23750000 11851000 11899000 11085000 4391000 6694000 269680 171190 98491 11505000 6782600 4722300 890150 505920 384230 0 0 0 0 0 0 34 3155 35 131;132;133;134 135;136;137;138 136 4 AAAEAGGDDAR ______________________________ ______________________________ M A A A R C 5 1 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 1002.4367 A6NDG6 A6NDG6 2 12 PGP Phosphoglycolate phosphatase yes yes 2 0.0019853 56.258 By MS/MS By MS/MS 1 1 1.134 1.016 1.9047 2 Median 1.0572 1.0025 NaN 1 0 Median 1.2163 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6053100 2855500 3197600 4754300 2323200 2431100 1298800 532320 766490 0 0 0 0 0 0 0 0 0 0 0 0 35 506 36 135;136 139;140 139 2 AAAEDVNVTFEDQQK ______________________________ AAAEDVNVTFEDQQKINKFARNTSRITELK K A A Q K I 3 0 1 2 0 2 2 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 15 0 1663.7689 E9PQY2;Q9NQP4 E9PQY2 8 22 PFDN4 Prefoldin subunit 4 yes no 2 1.3233E-07 131.37 By MS/MS By MS/MS By MS/MS 1 1 1 1.4537 1.2935 40.834 2 Median NaN NaN NaN 0 0 Median 1.1756 0.96914 NaN 1 0 Median 1.7976 1.7266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14463000 6068600 8394500 0 0 0 6941500 3430700 3510800 7521700 2637900 4883800 0 0 0 0 0 0 0 0 0 36 982 37 137;138;139 141;142;143 143 3 AAAEELLAR LGSQAPSWYHRDLSRAAAEELLARAGRDGS HRDLSRAAAEELLARAGRDGSFLVRDSESV R A A A R A 4 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 942.51345 O15357 O15357 29 37 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes yes 2 0.0084151 75.109 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37 1539 38 140 144 144 1 AAAEQAISVR AEQTAAREQAKEACKAAAEQAISVRQQVVL KEACKAAAEQAISVRQQVVLENAAKKRERA K A A V R Q 4 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q01780 Q01780 759 768 EXOSC10 Exosome component 10 yes yes 2 0.00047649 114.89 By MS/MS By MS/MS By matching 3 1 1 1.1386 1.0346 14.357 5 Median NaN NaN NaN 0 0 Median 1.21 1.0346 13.13 3 2 Median 1.1016 1.1811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0821 0.88177 NaN 1 0 Median 12662000 5501900 7160100 0 0 0 8008500 3384800 4623700 3687900 1674600 2013300 0 0 0 0 0 0 965610 442480 523130 38 2691 39 141;142;143;144;145 145;146;147;148;149;150 149 6 AAAEVAGQFVIK KELIERIPELNKVARAAAEVAGQFVIKLTH VARAAAEVAGQFVIKLTHDVELNLDYERYN R A A I K L 4 0 0 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 12 0 1202.6659 P02786;G3V0E5;H7C3V5 P02786 589 600 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.007789 57.96 By MS/MS 1 1.7206 1.6706 NaN 1 Median 1.7206 1.6706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7489400 2971000 4518500 7489400 2971000 4518500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39 1836 40 146 151 151 1 AAAEVNQDYGLDPK RMPTPVIKAFGILKRAAAEVNQDYGLDPKI RAAAEVNQDYGLDPKIANAIMKAADEVAEG R A A P K I 3 0 1 2 0 1 1 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 14 0 1489.7049 P07954 P07954 102 115 FH Fumarate hydratase, mitochondrial yes yes 2 2.9899E-06 96.015 By MS/MS By MS/MS 1 1 1.0025 0.88902 17.06 2 Median 0.85014 0.78799 NaN 1 0 Median 1.1822 1.003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20721000 9916300 10804000 12244000 5777800 6466000 8476900 4138500 4338400 0 0 0 0 0 0 0 0 0 0 0 0 40 1896 41 147;148 152;153;154;155 153 4 AAAFEEQENETVVVK AVKRASDNLVKAAQKAAAFEEQENETVVVK AAAFEEQENETVVVKEKMVGGIAQIIAAQE K A A V K E 3 0 1 0 0 1 4 0 0 0 0 1 0 1 0 0 1 0 0 3 0 0 15 0 1662.8101 Q9Y490 Q9Y490 2477 2491 TLN1 Talin-1 yes yes 2 8.7936E-10 147.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 1.2166 1.0879 21.357 8 Median 0.75427 0.72615 NaN 1 0 Median 1.3966 1.2328 13.27 2 0 Median 0.99852 1.1063 NaN 1 0 Median 1.0507 0.94824 17.064 2 0 Median NaN NaN NaN 0 0 Median 1.4348 1.1902 17.446 2 0 Median 44912000 22418000 22494000 19792000 10165000 9627200 10575000 4939300 5635800 8429600 4333700 4095900 4996500 2473400 2523200 0 0 0 1118200 506390 611830 41 4441 42 149;150;151;152;153;154;155;156 156;157;158;159;160;161;162;163;164;165;166 157 11 AAAFEEQENETVVVKEK AVKRASDNLVKAAQKAAAFEEQENETVVVK AFEEQENETVVVKEKMVGGIAQIIAAQEEM K A A E K M 3 0 1 0 0 1 5 0 0 0 0 2 0 1 0 0 1 0 0 3 0 0 17 1 1919.9476 Q9Y490 Q9Y490 2477 2493 TLN1 Talin-1 yes yes 3 2.2902E-05 50.079 By MS/MS 1 0.79812 0.78466 NaN 1 Median 0.79812 0.78466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5411900 2919300 2492600 5411900 2919300 2492600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 4441 43 157 167 167 1 AAAFEQLQK PTEKNVDLSTFYQNRAAAFEQLQKWKEVAQ TFYQNRAAAFEQLQKWKEVAQDCTKAVELN R A A Q K W 3 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1004.5291 O94826 O94826 160 168 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 6.9685E-05 150.17 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.2788 1.1343 29.427 5 Median 0.99073 0.94011 26.553 2 0 Median 1.2788 1.069 NaN 1 0 Median 1.6564 1.7609 NaN 1 0 Median 1.4702 1.2584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34231000 14981000 19250000 12530000 6144200 6386000 16456000 6980800 9475300 3880400 1323200 2557200 1364100 532670 831420 0 0 0 0 0 0 43 1728 44 158;159;160;161;162 168;169;170;171 170 4 AAAGAAATHLEVAR ______________________________ MAAAGAAATHLEVARGKRAALFFAAVAIVL M A A A R G 7 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1307.6946 Q96S52;K7EN97 Q96S52 2 15 PIGS GPI transamidase component PIG-S yes no 2;3 2.1428E-07 113.47 By MS/MS By MS/MS 2 4 1.3183 1.1428 41.761 6 Median 0.60546 0.58786 48.944 2 0 Median 1.3396 1.1603 2.9044 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23855000 11003000 12852000 6073200 3413000 2660200 17782000 7589800 10192000 0 0 0 0 0 0 0 0 0 0 0 0 44 3729 45 163;164;165;166;167;168 172;173;174;175 174 4 AAAGGQGSAVAAEAEPGKEEPPAR AKPPADPAAAASPCRAAAGGQGSAVAAEAE VAAEAEPGKEEPPARSSLFQEKANLYPPSN R A A A R S 8 1 0 0 0 1 4 4 0 0 0 1 0 0 3 1 0 0 0 1 0 0 24 1 2220.0771 Q9GZT9 Q9GZT9 129 152 EGLN1 Egl nine homolog 1 yes yes 3 6.3564E-05 32.264 By MS/MS By MS/MS 1 1 0.65121 0.64151 8.4489 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59743 0.6043 NaN 1 0 Median 0.70984 0.681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6583400 3997800 2585600 0 0 0 0 0 0 2472900 1218200 1254700 4110500 2779600 1330900 0 0 0 0 0 0 45 3917 46 169;170 176;177;178;179 178 4 AAAGLMSLLR ISTITPQIQAFNLQKAAAGLMSLLREMGKG FNLQKAAAGLMSLLREMGKGYLALCSYNCK K A A L R E 3 1 0 0 0 0 0 1 0 0 3 0 1 0 0 1 0 0 0 0 0 0 10 0 1001.5692 G5EA36;I3L328 G5EA36 457 466 CDC27 yes no 2 0.00035707 83.265 By matching By matching By MS/MS 1 1 2 0.98886 0.95037 16.936 4 Median NaN NaN NaN 0 0 Median 0.77643 0.70761 NaN 1 0 Median 0.91829 0.98596 NaN 1 0 Median 1.1234 0.97381 8.6448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5066700 2271400 2795300 0 0 0 491380 266320 225070 2906300 1247900 1658400 1669100 757220 911890 0 0 0 0 0 0 46 1135 47 171;172;173;174 180;181 181 2 AAAGPAAGPTGPEPMPSYAQLVQR ______________________________ TGPEPMPSYAQLVQRGWGSALAAARGCTDC M A A Q R G 6 1 0 0 0 2 1 3 0 0 1 0 1 0 5 1 1 0 1 1 0 0 24 0 2336.1583 P27544 P27544 2 25 CERS1 Ceramide synthase 1 yes yes 3 4.5382E-08 46.833 By MS/MS 1 0.3053 0.30892 NaN 1 Median 0.3053 0.30892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2107600 1651800 455730 2107600 1651800 455730 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 2155 48 175 182 182 1 AAAGQESEGPAVGPPQPLGK GEAAAAAAAERGEMKAAAGQESEGPAVGPP ESEGPAVGPPQPLGKELQDGAESNGGGGGG K A A G K E 4 0 0 0 0 2 2 4 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 0 1859.9377 O14497 O14497 52 71 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2;3 9.8341E-09 82.543 By MS/MS By MS/MS 2 2 0.46251 0.46268 12.42 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40835 0.45105 5.5225 2 0 Median 0.56351 0.51256 16.397 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32566000 21889000 10678000 0 0 0 0 0 0 30603000 20730000 9873200 1963000 1158600 804330 0 0 0 0 0 0 48 1480 49 176;177;178;179 183;184;185;186;187 185 5 AAAHLQGLIQVASR PEIEETSCLAELFEKAAAHLQGLIQVASRE KAAAHLQGLIQVASREQLLYLYARYKQVKV K A A S R E 4 1 0 0 0 2 0 1 1 1 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1433.8103 A0A2R8Y544;Q9BR61 A0A2R8Y544 49 62 ACBD6 Acyl-CoA-binding domain-containing protein 6 yes no 3 0.0001926 63.181 By MS/MS 1 0.76233 0.71381 NaN 1 Median 0.76233 0.71381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14254000 7295700 6958700 14254000 7295700 6958700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 369 50 180 188;189 188 2 AAAIGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K A A G K V 3 0 0 1 1 1 0 4 1 2 1 1 0 1 0 1 2 0 1 2 0 0 22 0 2264.126 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 5 26 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 2.1105E-13 84.493 By MS/MS By MS/MS 1 2 1.1886 1.0847 19.608 3 Median 1.1572 1.0847 NaN 1 0 Median 1.424 1.1934 26.609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60847000 23325000 37523000 13803000 5999400 7803300 47045000 17325000 29719000 0 0 0 0 0 0 0 0 0 0 0 0 50 278 51 181;182;183 190;191;192;193;194 191 5 AAALAAAVAQDPAASGAPSS KRLKEEKQKRKKEARAAALAAAVAQDPAAS AAVAQDPAASGAPSS_______________ R A A S S - 10 0 0 1 0 1 0 1 0 0 1 0 0 0 2 3 0 0 0 1 0 0 20 0 1695.8428 Q8TAE8 Q8TAE8 203 222 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 0.00060788 48.004 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28037000 0 0 20636000 0 0 0 0 0 7401300 0 0 0 0 0 0 0 0 0 0 0 51 3452 52 184;185 195;196;197 195 3 AAALATVNAWAEQTGMK IPIITVLGDSKNNVRAAALATVNAWAEQTG ALATVNAWAEQTGMKEWLEGEDLSEELKKE R A A M K E 6 0 1 0 0 1 1 1 0 0 1 1 1 0 0 0 2 1 0 1 0 0 17 0 1731.8614 Q14008 Q14008 959 975 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.031107 23.749 By matching By MS/MS 1 1 1.0603 1.0672 7.8352 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0124 1.128 NaN 1 0 Median 1.1105 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5673100 2617500 3055600 0 0 0 0 0 0 4309800 1952200 2357600 1363300 665350 697970 0 0 0 0 0 0 52 2850 53 186;187 198 198 1 AAALEAMKDYTK CIQLEPTFIKGYTRKAAALEAMKDYTKAMD TRKAAALEAMKDYTKAMDVYQKALDLDSSC K A A T K A 4 0 0 1 0 0 1 0 0 0 1 2 1 0 0 0 1 0 1 0 0 0 12 1 1310.654 P31948;H0YGI8 P31948 435 446 STIP1 Stress-induced-phosphoprotein 1 yes no 2;3 1.4879E-05 113.44 By MS/MS By MS/MS 2 2 1.123 1.0469 13.413 4 Median 1.2364 1.1522 14.717 2 0 Median 1.0572 0.98814 9.3316 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75037000 34197000 40841000 60336000 27070000 33266000 14701000 7126400 7574600 0 0 0 0 0 0 0 0 0 0 0 0 53 2212 54 188;189;190;191 199;200;201;202;203;204;205;206 200 8 AAALEFLNR TVDLKPDWGKGYSRKAAALEFLNRFEEAKR KGYSRKAAALEFLNRFEEAKRTYEEGLKHE K A A N R F 3 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1003.5451 P31948;F5H783;F5GXD8 P31948 79 87 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.00042676 129.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1464 1.0309 23.239 7 Median 1.1913 1.1262 NaN 1 0 Median 1.1693 1.0201 1.4915 2 0 Median 1.1902 1.2453 7.3904 2 1 Median 0.90364 0.7763 28.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48635000 21724000 26912000 20198000 9260600 10937000 18857000 8110700 10746000 8210500 3760400 4450100 1370300 591900 778440 0 0 0 0 0 0 54 2212 55 192;193;194;195;196;197;198 207;208;209;210;211;212;213;214;215 208 9 AAALEFLNRFEEAKR TVDLKPDWGKGYSRKAAALEFLNRFEEAKR AAALEFLNRFEEAKRTYEEGLKHEANNPQL K A A K R T 4 2 1 0 0 0 3 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 15 2 1763.9319 P31948;F5H783;F5GXD8 P31948 79 93 STIP1 Stress-induced-phosphoprotein 1 yes no 3;4 0.00093688 63.709 By MS/MS 2 1.2023 1.2137 11.923 2 Median 1.2023 1.2137 11.923 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23637000 10228000 13409000 23637000 10228000 13409000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 2212 56 199;200 216;217 217 2 AAALEQFK AAKSMGAIVRGFDTRAAALEQFKSLGAEPL VRGFDTRAAALEQFKSLGAEPLEVDLKESG R A A F K S 3 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 876.47052 Q13423;E9PCX7;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 260 267 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0062263 72.138 By MS/MS 1 0.84023 0.83965 NaN 1 Median 0.84023 0.83965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7372300 4001600 3370700 7372300 4001600 3370700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 56 2814 57 201 218 218 1 AAALGASGGAGAGDDDFDQFDKPGAER ______________________________ GDDDFDQFDKPGAERSWRRRAADEDWDSEL M A A E R S 7 1 0 5 0 1 1 6 0 0 1 1 0 2 1 1 0 0 0 0 0 0 27 1 2565.1368 Q96EV2;A8MTF7 Q96EV2 2 28 RBM33 RNA-binding protein 33 yes no 3 3.2223E-11 67.239 By MS/MS 1 0.66714 0.67648 NaN 1 Median 0.66714 0.67648 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3407000 2068600 1338400 3407000 2068600 1338400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 3642 58 202 219 219 1 AAALLLQNDNNADVESK RLPALHIAARKDDTKAAALLLQNDNNADVE ALLLQNDNNADVESKSGFTPLHIAAHYGNI K A A S K S 4 0 3 2 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 17 0 1784.8905 Q12955;D6RHY3;A0A087X0B4 Q12955 217 233 ANK3 Ankyrin-3 yes no 2 1.6574E-14 114.82 By MS/MS 1 1.6882 1.8626 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6882 1.8626 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12631000 4496500 8134800 0 0 0 0 0 0 12631000 4496500 8134800 0 0 0 0 0 0 0 0 0 58 2773 59 203 220 220 1 AAAMANNLQK GVPIIVQASQAEKNRAAAMANNLQKGSAGP AEKNRAAAMANNLQKGSAGPMRLYVGSLHF R A A Q K G 4 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 10 0 1030.523 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6 Q14498 235 244 RBM39 RNA-binding protein 39 yes no 2 0.00036295 87.323 By matching By MS/MS 1 2 0.94931 0.94891 6.5548 3 Median NaN NaN NaN 0 0 Median 1.016 0.88082 NaN 1 0 Median 0.9463 0.97596 3.9749 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4771800 2295100 2476700 0 0 0 1137600 484840 652730 3634300 1810300 1824000 0 0 0 0 0 0 0 0 0 59 2879 60 204;205;206 221;222 221 2 AAAMDVDTPSGTNSGAGK ______________________________ MDVDTPSGTNSGAGKKRFEVKKWNAVALWA M A A G K K 4 0 1 2 0 0 0 3 0 0 0 1 1 0 1 2 2 0 0 1 0 0 18 0 1648.7363 P62877 P62877 2 19 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 2 4.8743E-15 160.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 0.94763 0.82842 11.126 9 Median 0.92758 0.86114 5.4791 2 0 Median 1.0012 0.83412 7.8763 2 0 Median 0.82377 0.78752 0.83183 2 0 Median 0.96562 0.79121 9.6479 2 0 Median 1.0079 1.0814 NaN 1 0 Median NaN NaN NaN 0 0 Median 63865000 32345000 31520000 17312000 9185100 8127100 7700100 3609500 4090600 33073000 16794000 16279000 3718400 1731900 1986500 2062000 1024500 1037500 0 0 0 60 2605 61;62 207;208;209;210;211;212;213;214;215 223;224;225;226;227;228;229;230;231;232;233;234 228 1268 12 AAAMDVDTPSGTNSGAGKK ______________________________ DVDTPSGTNSGAGKKRFEVKKWNAVALWAW M A A K K R 4 0 1 2 0 0 0 3 0 0 0 2 1 0 1 2 2 0 0 1 0 0 19 1 1776.8312 P62877 P62877 2 20 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 2 5.8142E-31 136.99 By MS/MS By MS/MS By MS/MS 2 1 1 0.81118 0.77287 10.644 4 Median 0.74185 0.7187 6.2603 2 0 Median 0.91721 0.79513 NaN 1 1 Median 0.87788 0.88648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31925000 16356000 15569000 9520000 5324200 4195800 7128300 2787200 4341100 15277000 8244600 7032300 0 0 0 0 0 0 0 0 0 61 2605 63 216;217;218;219 235;236;237;238;239;240;241 241 7 AAAMVPGR ______________________________ ______________________________ - A A G R S 3 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 8 0 771.40614 H0Y8X4;O43598 H0Y8X4 1 8 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 2 0.058648 46.37 By MS/MS 1 0.925 0.76841 NaN 1 Median NaN NaN NaN 0 0 Median 0.925 0.76841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1657500 729020 928460 0 0 0 1657500 729020 928460 0 0 0 0 0 0 0 0 0 0 0 0 62 1164 64 220 242 242 1 AAANEQLTR DQKRLKQAKELDRERAAANEQLTRAILRER ELDRERAAANEQLTRAILRERICSEEERAK R A A T R A 3 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 972.49886 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 96 104 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.02476 52.716 By MS/MS By MS/MS By MS/MS 1 1 1 1.4173 1.1602 12.621 3 Median 1.0879 1.0221 NaN 1 0 Median 1.5405 1.3156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4173 1.1602 NaN 1 0 Median 1706000 769790 936250 999810 499770 500040 337930 123030 214900 0 0 0 0 0 0 0 0 0 368300 146990 221320 63 720 65 221;222;223 243;244;245;246 245 4 AAANPDLQGHLPSFQQSAFNR AREKTEKIISAELQKAAANPDLQGHLPSFQ LQGHLPSFQQSAFNRVVSSVSSSPRQTMDY K A A N R V 4 1 2 1 0 3 0 1 1 0 2 0 0 2 2 2 0 0 0 0 0 0 21 0 2268.1036 P29375 P29375 1303 1323 KDM5A Lysine-specific demethylase 5A yes yes 3 5.6203E-09 54.834 By MS/MS 1 0.51403 0.56277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51403 0.56277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8381100 4782400 3598700 0 0 0 0 0 0 8381100 4782400 3598700 0 0 0 0 0 0 0 0 0 64 2172 66 224 247;248 247 2 AAAPAEGPPGGIQPEAAEPKPTAEAPK AADGAGPEDDTEASRAAAPAEGPPGGIQPE QPEAAEPKPTAEAPKAPRVEEIPQRMTRNR R A A P K A 8 0 0 0 0 1 4 3 0 1 0 2 0 0 7 0 1 0 0 0 0 0 27 1 2551.2918 Q6UB99 Q6UB99 2299 2325 ANKRD11 Ankyrin repeat domain-containing protein 11 yes yes 3 0.053602 17.216 By MS/MS 1 0.27097 0.3079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27097 0.3079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3519500 2854000 665500 0 0 0 0 0 0 3519500 2854000 665500 0 0 0 0 0 0 0 0 0 65 3184 67 225 249 249 1 AAAPGVEDEPLLR TARRIFQEPTEPKTKAAAPGVEDEPLLREN TKAAAPGVEDEPLLRENPRRFVIFPIEYHD K A A L R E 3 1 0 1 0 0 2 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 13 0 1336.6987 P31350;A0A286YFD6;C9JXC1 P31350 62 74 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 3.872E-07 109.44 By MS/MS By MS/MS By MS/MS 2 1 1 0.66177 0.61114 11.458 4 Median 0.56567 0.56684 18.35 2 0 Median 0.7095 0.61423 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68429 0.60806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18515000 11152000 7363500 13639000 8415100 5224300 3661900 2070500 1591500 0 0 0 1214000 666240 547760 0 0 0 0 0 0 66 2203 68 226;227;228;229 250;251;252;253;254;255 251 5 AAAPQAWAGPMEEPPQAQAPPR ETQEPSPILDSEETRAAAPQAWAGPMEEPP AGPMEEPPQAQAPPRGPGSPAEDLMFMESA R A A P R G 7 1 0 0 0 3 2 1 0 0 0 0 1 0 6 0 0 1 0 0 0 0 22 0 2270.0902 Q16643;D6R9Q9 Q16643 391 412 DBN1 Drebrin yes no 3 0.0059552 28.505 By MS/MS 1 0.35898 0.34714 NaN 1 Median 0.35898 0.34714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3886900 3012100 874800 3886900 3012100 874800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 2991 69 230 256 256 1 AAAQEADGAR ______________________________ ______________________________ M A A A R S 5 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 958.44682 O96005;K7EQQ1 O96005 2 11 CLPTM1 Cleft lip and palate transmembrane protein 1 yes no 2 0.0010041 69.598 By MS/MS 3 1.0559 0.89175 9.0082 3 Median NaN NaN NaN 0 0 Median 1.0559 0.89175 9.0082 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3448000 1798600 1649400 0 0 0 3448000 1798600 1649400 0 0 0 0 0 0 0 0 0 0 0 0 68 1805 70 231;232;233 257 257 1 AAAQEQYSAAVAR MVIDGVTYPGNIKEKAAAQEQYSAAVARGE EKAAAQEQYSAAVARGESAGLVRATGRKTE K A A A R G 6 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 13 0 1334.6579 CON__Q3T052 CON__Q3T052 100 112 yes yes 2 9.8952E-05 98.943 By MS/MS By MS/MS 1 1 0.055795 0.052662 60.716 2 Median 0.081988 0.080901 NaN 1 1 Median 0.03797 0.03428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3112400 2990100 122260 2145900 2051700 94271 966470 938490 27984 0 0 0 0 0 0 0 0 0 0 0 0 + 69 781 71 234;235 258;259 258 2 AAAQLLQSQAQQSGAQQTK KKELEEEVNNFQKKKAAAQLLQSQAQQSGA LLQSQAQQSGAQQTKKDKDKKK________ K A A T K K 5 0 0 0 0 7 0 1 0 0 2 1 0 0 0 2 1 0 0 0 0 0 19 0 1956.0025 D6RGI3;D6RER5;Q9NVA2;H0Y961;H0Y9G8 D6RGI3 400 418 SEPT11 Septin-11 yes no 2;3 5.3567E-175 305.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 4 1 1.1881 1.0939 13.617 14 Median 0.9783 0.92561 6.4307 2 0 Median 1.2702 1.0939 1.4629 2 0 Median 1.169 1.1154 17.908 5 0 Median 1.2977 1.1942 4.7688 4 0 Linear NaN NaN NaN 0 0 Median 1.1856 0.9947 NaN 1 0 Median 405520000 178030000 227490000 9575900 4932300 4643600 3938600 1678700 2259900 193880000 85721000 108160000 196470000 85111000 111350000 0 0 0 1651100 584420 1066700 70 822 72 236;237;238;239;240;241;242;243;244;245;246;247;248;249 260;261;262;263;264;265;266;267;268;269;270;271;272;273;274;275;276;277;278;279;280 269 21 AAAQLLQSQAQQSGAQQTKK KKELEEEVNNFQKKKAAAQLLQSQAQQSGA LQSQAQQSGAQQTKKDKDKKK_________ K A A K K D 5 0 0 0 0 7 0 1 0 0 2 2 0 0 0 2 1 0 0 0 0 0 20 1 2084.0974 D6RGI3;D6RER5;Q9NVA2;H0Y961;H0Y9G8 D6RGI3 400 419 SEPT11 Septin-11 yes no 3 7.2108E-20 121.26 By MS/MS By MS/MS 1 2 1.2598 1.2592 7.6885 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0714 1.1165 NaN 1 0 Median 1.3072 1.2737 1.6137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39745000 17238000 22507000 0 0 0 0 0 0 18353000 8421100 9932100 21391000 8816500 12575000 0 0 0 0 0 0 71 822 73 250;251;252 281;282;283;284 284 4 AAAQQLGEVVK LFILLDTGTTPVTRKAAAQQLGEVVKLHPH VTRKAAAQQLGEVVKLHPHELNNLLSKVLI K A A V K L 3 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1112.619 A0A0A0MTH9;O14981 A0A0A0MTH9 24 34 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.0054272 66.692 By MS/MS 1 1.112 1.2393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.112 1.2393 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3901800 1762400 2139300 0 0 0 0 0 0 3901800 1762400 2139300 0 0 0 0 0 0 0 0 0 72 191 74 253 285 285 1 AAASGSVLQR ______________________________ ______________________________ M A A Q R C 3 1 0 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 10 0 958.51959 Q5VWZ2 Q5VWZ2 2 11 LYPLAL1 Lysophospholipase-like protein 1 yes yes 2 3.3993E-05 114.28 By MS/MS By matching 1 1 0.70129 0.70524 94.084 2 Median 1.4478 1.3717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3397 0.36259 NaN 1 0 Median NaN NaN NaN 0 0 Median 10743000 4546800 6196500 8911400 3449200 5462100 0 0 0 0 0 0 0 0 0 1831900 1097600 734340 0 0 0 73 3115 75 254;255 286 286 0 AAASGYTDLR ______________________________ ______________________________ M A A L R E 3 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1023.4985 Q6P6C2 Q6P6C2 2 11 ALKBH5 RNA demethylase ALKBH5 yes yes 2 0.0003602 83.948 By MS/MS By MS/MS By matching 1 2 1 1.1662 1.0781 25.034 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1281 1.1229 NaN 1 0 Median 0.9743 0.83416 32.065 2 0 Median NaN NaN NaN 0 0 Median 1.2604 1.1107 NaN 1 0 Median 11855000 5393500 6461100 0 0 0 0 0 0 7013300 3217700 3795600 4576500 2120200 2456300 0 0 0 264730 55502 209230 74 3163 76 256;257;258;259 287;288 288 2 AAASGYTDLREK ______________________________ ______________________________ M A A E K L 3 1 0 1 0 0 1 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 12 1 1280.6361 Q6P6C2 Q6P6C2 2 13 ALKBH5 RNA demethylase ALKBH5 yes yes 2 3.2499E-09 133.23 By MS/MS 2 0.94417 0.90419 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94417 0.90419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7114900 3345300 3769600 0 0 0 0 0 0 0 0 0 7114900 3345300 3769600 0 0 0 0 0 0 75 3163 77 260;261 289;290 289 2 AAASLSQPEEEQKLQPELQPK FWRIPAKLSPTQLRRAAASLSQPEEEQKLQ QPEEEQKLQPELQPKVPGEQGSDEEHCKEH R A A P K V 3 0 0 0 0 4 4 0 0 0 3 2 0 0 3 2 0 0 0 0 0 0 21 1 2320.1911 Q9UNS1 Q9UNS1 1094 1114 TIMELESS Protein timeless homolog yes yes 3 0.040379 29.276 By MS/MS 1 0.85628 0.98407 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85628 0.98407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5745800 2949100 2796700 0 0 0 0 0 0 5745800 2949100 2796700 0 0 0 0 0 0 0 0 0 76 4349 78 262 291 291 0 AAASMGDTLSEQQLGDSDIPVIVYR ERRLDFMGWLGAIQKAAASMGDTLSEQQLG EQQLGDSDIPVIVYRCVDYITQCGLTSEGI K A A Y R C 3 1 0 3 0 2 1 2 0 2 2 0 1 0 1 3 1 0 1 2 0 0 25 0 2635.2799 E7EU13;Q96P48;A0A0A0MSJ2;F8WBT0 E7EU13 707 731 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 3 0.0094016 18.56 By MS/MS 1 0.68869 0.69124 NaN 1 Median 0.68869 0.69124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1829900 1081000 748910 1829900 1081000 748910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 893 79 263 292;293 292 2 AAASTDYYK ICENNRYGMGTSVERAAASTDYYKRGDFIP GTSVERAAASTDYYKRGDFIPGLRVDGMDI R A A Y K R 3 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 0 0 9 0 988.45018 P08559 P08559 236 244 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes yes 2 0.0036742 63.48 By matching By MS/MS 1 1 1.2582 1.1537 3.9951 2 Median 1.1481 1.1216 NaN 1 0 Median 1.3788 1.1868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3523000 1355300 2167700 370960 194070 176890 3152000 1161200 1990800 0 0 0 0 0 0 0 0 0 0 0 0 78 1902 80 264;265 294;295 294 2 AAATAEEPDPK KLAGDMKSKVVVTEKAAATAEEPDPKGIPE VTEKAAATAEEPDPKGIPEFWFTIFRNVDM K A A P K G 4 0 0 1 0 0 2 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 11 0 1098.5193 Q99733;C9J6D1;C9JZI7;A8MXH2;E9PKT8;H0YCI4 Q99733 147 157 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 0.00018993 96.331 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 2 1 0.75082 0.6924 8.4132 10 Median 0.74324 0.69021 6.1313 3 0 Plateau 0.83032 0.70566 2.1987 2 0 Median 0.71004 0.73155 7.3304 2 0 Median 0.76603 0.65924 15.894 2 0 Median NaN NaN NaN 0 0 Median 0.77308 0.63387 NaN 1 0 Median 20625000 11203000 9421300 11980000 6676400 5303500 6360100 3256900 3103200 1435400 796520 638910 692480 388910 303570 0 0 0 156900 84734 72171 79 3766 81 266;267;268;269;270;271;272;273;274;275 296;297;298;299;300;301;302;303;304;305 303 10 AAATGAVAASAASGQAEGK ______________________________ GAVAASAASGQAEGKKITDLRVIDLKSELK M A A G K K 9 0 0 0 0 1 1 3 0 0 0 1 0 0 0 2 1 0 0 1 0 0 19 0 1587.7853 Q9NWH9;H7BXE3;H0YL55;H0YLW7;H0YMW8;H0YNF3;H0YMR6;H0YLE6 Q9NWH9 2 20 SLTM SAFB-like transcription modulator yes no 2 2.7377E-47 209.19 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 7 1 0.83918 0.86791 16.482 11 Median NaN NaN NaN 0 0 Median 1.0088 0.86791 NaN 1 0 Median 0.94002 1.0029 NaN 1 0 Median 1.2344 1.0561 NaN 1 0 Median 0.82832 0.82225 15.968 7 0 Median 0.92291 0.79098 NaN 1 0 Median 88164000 45884000 42280000 0 0 0 767590 283390 484200 16619000 7915700 8703100 2762000 1167000 1595000 66582000 35918000 30664000 1433200 599870 833330 80 4149 82 276;277;278;279;280;281;282;283;284;285;286 306;307;308;309;310;311;312;313;314;315;316;317;318 309 12 AAATGAVAASAASGQAEGKK ______________________________ AVAASAASGQAEGKKITDLRVIDLKSELKR M A A K K I 9 0 0 0 0 1 1 3 0 0 0 2 0 0 0 2 1 0 0 1 0 0 20 1 1715.8802 Q9NWH9;H7BXE3;H0YL55;H0YLW7;H0YMW8;H0YNF3;H0YMR6;H0YLE6 Q9NWH9 2 21 SLTM SAFB-like transcription modulator yes no 2 1.5578E-161 251.84 By MS/MS By MS/MS By MS/MS By matching 2 1 7 2 0.89156 0.98061 24.213 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92392 1.0718 7.8932 2 2 Median 1.4235 1.356 NaN 1 1 Median 0.82591 0.84162 22.093 7 0 Median 1.1127 0.99922 4.4246 2 0 Median 108570000 56825000 51748000 0 0 0 0 0 0 29773000 15360000 14413000 1542000 555890 986140 73719000 39199000 34519000 3539100 1709800 1829200 81 4149 83 287;288;289;290;291;292;293;294;295;296;297;298 319;320;321;322;323;324;325;326;327;328;329;330 319 12 AAATIDSLASR EKIIKQAKHIFLRSRAAATIDSLASRIEDP LRSRAAATIDSLASRIEDPQIQAHWSNIND R A A S R I 4 1 0 1 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 11 0 1074.5669 A0A1W2PRB8 A0A1W2PRB8 631 641 no no 2 0.00019716 105.4 By MS/MS 1 0.95838 0.97952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95838 0.97952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8210200 3929500 4280600 0 0 0 0 0 0 8210200 3929500 4280600 0 0 0 0 0 0 0 0 0 82 346 84 299 331 331 1 AAAVAAAGAGEPQSPDELLPK ______________________________ AGAGEPQSPDELLPKGDAEKPEEELEEDDD M A A P K G 7 0 0 1 0 1 2 2 0 0 2 1 0 0 3 1 0 0 0 1 0 0 21 0 1962.0058 Q9NS69 Q9NS69 2 22 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2;3 1.6386E-23 121.28 By MS/MS By MS/MS By matching 2 1 1 0.75641 0.68503 24.795 4 Median 0.65411 0.61687 0.25455 2 0 Median 0.87378 0.75935 NaN 1 0 Median 1.1249 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33559000 19718000 13842000 31821000 18778000 13044000 1190700 605820 584910 547300 334510 212790 0 0 0 0 0 0 0 0 0 83 4096 85 300;301;302;303 332;333;334;335;336;337;338;339;340;341;342;343;344 336 13 AAAVAMETDDAGNR ______________________________ MAAAVAMETDDAGNRLRFQLELEFVQCLAN M A A N R L 5 1 1 2 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 14 0 1390.6147 Q9Y3C7;I3L0P8 Q9Y3C7 2 15 MED31 Mediator of RNA polymerase II transcription subunit 31 yes no 2 6.8476E-06 93.096 By MS/MS 1 1.0119 1.026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0119 1.026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7790800 4158800 3632000 0 0 0 0 0 0 7790800 4158800 3632000 0 0 0 0 0 0 0 0 0 84 4419 86 304 345;346 345 2 AAAVAMETDDAGNRLR ______________________________ AAVAMETDDAGNRLRFQLELEFVQCLANPN M A A L R F 5 2 1 2 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 16 1 1659.7999 Q9Y3C7;I3L0P8 Q9Y3C7 2 17 MED31 Mediator of RNA polymerase II transcription subunit 31 yes no 2 0.0036136 52.579 By MS/MS 2 0.92156 1.0008 20.065 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92156 1.0008 20.065 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20750000 10474000 10276000 0 0 0 0 0 0 20750000 10474000 10276000 0 0 0 0 0 0 0 0 0 85 4419 87;88 305;306 347;348 347 1974 2 AAAVAVAAASR ______________________________ ______________________________ M A A S R R 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 11 0 956.54033 Q7Z5L9 Q7Z5L9 2 12 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 2 0.058428 41.448 By MS/MS 1 0.58619 0.59402 NaN 1 Median 0.58619 0.59402 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1637100 962420 674640 1637100 962420 674640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 3250 89 307 349 349 1 AAAVLPVLDLAQR KRIEAIVKNYPEGHKAAAVLPVLDLAQRQN HKAAAVLPVLDLAQRQNGWLPISAMNKVAE K A A Q R Q 4 1 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 2 0 0 13 0 1335.7874 E7EPT4;P19404 E7EPT4 79 91 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.00012318 84.17 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 0.86904 0.84722 18.639 7 Median 0.86496 0.83639 1.8194 2 0 Median 1.501 1.2754 NaN 1 0 Median 0.76932 0.73924 NaN 1 0 Median 1.114 0.91635 NaN 1 0 Median 0.79075 0.77473 NaN 1 0 Median 1.2496 1.0145 NaN 1 0 Median 40218000 19921000 20297000 25601000 12574000 13027000 1648900 625110 1023800 9436700 5038900 4397800 483160 207160 275990 1623100 862220 760890 1425300 613670 811660 87 873 90 308;309;310;311;312;313;314 350;351;352;353;354;355;356;357;358 351 9 AAAVLSGPSAGSAAGVPGGTGGLSAVSSGPR ______________________________ PGGTGGLSAVSSGPRLRLLLLESVSGLLQP M A A P R L 7 1 0 0 0 0 0 8 0 0 2 0 0 0 3 6 1 0 0 3 0 0 31 0 2565.3147 Q8IZL8 Q8IZL8 2 32 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 7.9741E-22 72.707 By MS/MS By MS/MS 1 1 0.9963 1.0553 66.089 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5314 1.684 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.6482 0.66136 NaN 1 0 Median NaN NaN NaN 0 0 Median 30795000 17164000 13631000 0 0 0 0 0 0 8855400 4029200 4826300 0 0 0 21940000 13135000 8804700 0 0 0 88 3351 91 315;316 359;360;361 361 3 AAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMK GVGPELMHAVKEVFKAAAVPVEFQEHHLSE MASEEKLEQVLSSMKENKVAIIGKIHTPME K A A M K E 4 0 1 0 0 3 6 0 2 0 3 2 2 1 1 4 0 0 0 4 0 0 33 1 3694.7971 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 73 105 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 5 0.052523 9.0653 By MS/MS 1 0.94992 0.85774 NaN 1 Median NaN NaN NaN 0 0 Median 0.94992 0.85774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5994100 2427200 3566900 0 0 0 5994100 2427200 3566900 0 0 0 0 0 0 0 0 0 0 0 0 89 96 92 317 362 362 1 AAAVQADDVEVLK GPADAMELADHLVKRAAAVQADDVEVLKVG KRAAAVQADDVEVLKVGRTQLIDAVLNLCT R A A L K V 4 0 0 2 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 13 0 1327.6983 Q8N201 Q8N201 683 695 INTS1 Integrator complex subunit 1 yes yes 2 0.00049168 72.2 By MS/MS 1 0.8791 0.96987 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8791 0.96987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12703000 6726500 5976000 0 0 0 0 0 0 12703000 6726500 5976000 0 0 0 0 0 0 0 0 0 90 3360 93 318 363 363 1 AAAVSALAK RFIFNRVVLENEAVRAAAVSALAKFGAQNE ENEAVRAAAVSALAKFGAQNESLLPSILVL R A A A K F 5 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 800.4756 Q9UBF2 Q9UBF2 489 497 COPG2 Coatomer subunit gamma-2 yes yes 2 0.020392 52.716 By MS/MS By MS/MS 1 1 1.2721 1.2078 6.8293 2 Median 1.131 1.1508 NaN 1 0 Median 1.4308 1.2675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2583600 1096700 1487000 729530 327900 401630 1854100 768760 1085400 0 0 0 0 0 0 0 0 0 0 0 0 91 4238 94 319;320 364;365 364 2 AAAVSSVVR ______________________________ ______________________________ M A A V R R 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 3 0 0 9 0 858.49232 A6NDU8;A0A0C4DGW6 A6NDU8 2 10 C5orf51 UPF0600 protein C5orf51 yes no 2 0.020605 52.716 By MS/MS 1 0.40053 0.37465 NaN 1 Median 0.40053 0.37465 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23926000 13484000 10442000 23926000 13484000 10442000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92 507 95 321 366 366 1 AAAYSAQVQPVDGATR AQMEAEWREALRALRAAAYSAQVQPVDGAT AAYSAQVQPVDGATRKKSQRVCRPRSIWRA R A A T R K 5 1 0 1 0 2 0 1 0 0 0 0 0 0 1 1 1 0 1 2 0 0 16 0 1603.7954 A0A3B3IRR6;A0A3B3IT54;A0A3B3ITA3;Q9H7E9 A0A3B3IRR6 183 198 C8orf33 UPF0488 protein C8orf33 yes no 2 1.816E-08 150.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 1.1726 0.97256 28.332 8 Median 0.90037 0.8421 NaN 1 0 Median 1.2306 1.0426 NaN 1 0 Median 1.4569 1.3998 19.254 2 2 Median 0.87948 0.73146 8.9097 2 0 Median 1.2698 1.2635 NaN 1 0 Median 1.1174 0.90723 NaN 1 0 Median 39116000 17290000 21826000 10757000 5623300 5133200 1130500 602690 527800 15214000 5140700 10073000 5954000 3065600 2888400 4772900 2239200 2533700 1287900 618580 669350 93 415 96 322;323;324;325;326;327;328;329 367;368;369;370;371;372;373;374;375;376;377 367 10 AACDLVR IRRDLEGSDIDTRRRAACDLVRGLCKFFEG SDIDTRRRAACDLVRGLCKFFEGPVTGIFS R A A V R G 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 803.39597 P55060 P55060 385 391 CSE1L Exportin-2 yes yes 2 0.020057 60.788 By MS/MS 1 1.0998 0.93987 NaN 1 Median NaN NaN NaN 0 0 Median 1.0998 0.93987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2956800 1414600 1542200 0 0 0 2956800 1414600 1542200 0 0 0 0 0 0 0 0 0 0 0 0 94 2493 97 330 378;379 379 2 AADAEAEVASLNRR ALKDAQEKLELAEKKAADAEAEVASLNRRI KAADAEAEVASLNRRIQLVEEELDRAQERL K A A R R I 5 2 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 14 1 1471.7379 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 J3KN67 79 92 TPM3 Tropomyosin alpha-3 chain yes no 2 0.00029717 77.662 By MS/MS 2 1.3058 1.1545 21.043 2 Median NaN NaN NaN 0 0 Median 1.3058 1.1545 21.043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5720200 2339400 3380800 0 0 0 5720200 2339400 3380800 0 0 0 0 0 0 0 0 0 0 0 0 95 1303 98 331;332 380 380 1 AADALEEQQR SLKVTKGSLEEEKRRAADALEEQQRCISEL EEKRRAADALEEQQRCISELKAETRSLVEQ R A A Q R C 3 1 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1129.5364 A0A087WY61;F5H4J1;Q14980 Q14980 725 734 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00040727 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.0135 0.94013 36.468 6 Median NaN NaN NaN 0 0 Median 1.0856 0.91356 NaN 1 0 Median 0.87707 0.96748 NaN 1 0 Median 1.2354 1.0859 NaN 1 0 Median 0.95684 0.99953 NaN 1 0 Median 0.71577 0.60162 56.477 2 0 Median 13049000 6449800 6599000 0 0 0 1037500 487700 549820 4747600 2455200 2292400 638220 320940 317280 5218100 2468300 2749700 1407400 717650 689750 96 2905;77 99 333;334;335;336;337;338 381;382;383;384;385;386;387;388;389;390 385 10 AADAVEDLR AGYKAIYHDLEQSIRAADAVEDLRWFRANH LEQSIRAADAVEDLRWFRANHGPGMAMNWP R A A L R W 3 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 958.47197 A0A0U1RR22;Q9UNF0 A0A0U1RR22 276 284 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.00073077 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0952 1.0102 4.1207 4 Median 1.074 1.0344 NaN 1 0 Median 1.1168 0.96651 NaN 1 0 Median 1.0101 1.0567 NaN 1 0 Median 1.1776 0.98663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20631000 9542300 11089000 6638500 3115600 3523000 6011300 2824100 3187200 3125300 1453400 1671900 4856300 2149300 2707000 0 0 0 0 0 0 97 307 100 339;340;341;342 391;392;393;394;395 393 5 AADEEAFEDNSEEYIR TSICEKVIVPNMEFRAADEEAFEDNSEEYI ADEEAFEDNSEEYIRRDLEGSDIDTRRRAA R A A I R R 3 1 1 2 0 0 5 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 16 0 1886.7806 P55060 P55060 356 371 CSE1L Exportin-2 yes yes 2 5.3982E-27 197.31 By MS/MS By matching By matching By matching 1 2 1 1 1.2301 1.0518 13.735 5 Median 1.018 0.97998 NaN 1 0 Median 1.1924 1.0427 5.3235 2 0 Median 1.2912 1.3813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2396 1.0518 NaN 1 0 Median 25390000 11993000 13397000 17798000 8608100 9189800 3191100 1348900 1842200 4273100 1983900 2289200 0 0 0 0 0 0 127920 51994 75928 98 2493 101 343;344;345;346;347 396;397 397 2 AADEEAFEDNSEEYIRR TSICEKVIVPNMEFRAADEEAFEDNSEEYI DEEAFEDNSEEYIRRDLEGSDIDTRRRAAC R A A R R D 3 2 1 2 0 0 5 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 17 1 2042.8817 P55060 P55060 356 372 CSE1L Exportin-2 yes yes 2;3 1.0532E-24 134.9 By MS/MS 2 1.0398 1.1553 0.88713 2 Median 1.0398 1.1553 0.88713 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56419000 28305000 28114000 56419000 28305000 28114000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 2493 102 348;349 398;399;400 400 3 AADEVAGGAR ______________________________ ______________________________ M A A A R K 4 1 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 10 0 915.44101 Q6STE5 Q6STE5 2 11 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 2 0.02285 41.029 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3183 103 350 401 401 1 AADEVLAEAK APLEIGLQRSTQVKRAADEVLAEAKKPRIE TQVKRAADEVLAEAKKPRIEDEECVRLDKE R A A A K K 4 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1015.5186 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640 Q6P1J9 127 136 CDC73 Parafibromin yes no 2 0.003121 57.859 By MS/MS 1 0.87794 0.90032 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87794 0.90032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3036600 1644100 1392500 0 0 0 0 0 0 3036600 1644100 1392500 0 0 0 0 0 0 0 0 0 101 3150 104 351 402;403 403 2 AADFIDQALAQK ANDTQEFNLSAYFERAADFIDQALAQKNGR FERAADFIDQALAQKNGRVLVHCREGYSRS R A A Q K N 4 0 0 2 0 2 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 12 0 1289.6616 P51452;K7ES89;K7ELG5 P51452 105 116 DUSP3 Dual specificity protein phosphatase 3 yes no 2 0.0011423 56.563 By MS/MS 1 1.1097 0.95455 NaN 1 Median NaN NaN NaN 0 0 Median 1.1097 0.95455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2912900 1306200 1606700 0 0 0 2912900 1306200 1606700 0 0 0 0 0 0 0 0 0 0 0 0 102 2432 105 352 404;405 405 2 AADFQLHTHVNDGTEFGGSIYQK AKSKLSQNNFALGYKAADFQLHTHVNDGTE HVNDGTEFGGSIYQKVNEKIETSINLAWTA K A A Q K V 2 0 1 2 0 2 1 3 2 1 1 1 0 2 0 1 2 0 1 1 0 0 23 0 2534.1826 Q9Y277 Q9Y277 175 197 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 3 0.041756 10.399 By MS/MS By matching 1 2 1.3767 1.16 4.7791 3 Median 1.1361 1.0797 NaN 1 0 Median 1.3832 1.171 1.3353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9765100 4001400 5763700 5485300 2351900 3133400 4279800 1649500 2630300 0 0 0 0 0 0 0 0 0 0 0 0 103 4377 106 353;354;355 406 406 1 AADGGERPLAASPPGTVK VGRSAGGEPGPEAGRAADGGERPLAASPPG GGERPLAASPPGTVKAEEHQRQNINKFERR R A A V K A 4 1 0 1 0 0 1 3 0 0 1 1 0 0 3 1 1 0 0 1 0 0 18 1 1692.8795 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 687 704 WIZ Protein Wiz yes no 3 0.00093221 31.801 By MS/MS By MS/MS 1 1 0.69229 0.72251 19.015 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55727 0.63161 NaN 1 0 Median 0.86002 0.82649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5226500 3342700 1883800 0 0 0 0 0 0 3883400 2480400 1403000 1343200 862310 480850 0 0 0 0 0 0 104 656 107 356;357 407;408;409;410 410 4 AADHLKPFLDDSTLR TAALNCVGKGMDKKKAADHLKPFLDDSTLR AADHLKPFLDDSTLRFVDKLFEAVEEGRSS K A A L R F 2 1 0 3 0 0 0 0 1 0 3 1 0 1 1 1 1 0 0 0 0 0 15 1 1697.8737 O43395 O43395 47 61 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 3 0.00010847 54.598 By MS/MS By MS/MS 3 1 0.78204 0.88725 22.218 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7091 0.77858 18.478 2 1 Median 1.124 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21685000 12715000 8970300 0 0 0 0 0 0 19211000 11613000 7598500 2474100 1102300 1371700 0 0 0 0 0 0 105 1569 108 358;359;360;361 411;412;413;414;415;416 413 6 AADIDQEVK PYIKDLFTCTIKRLKAADIDQEVKERAISC TIKRLKAADIDQEVKERAISCMGQIICNLG K A A V K E 2 0 0 2 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 9 0 987.48729 Q86VP6 Q86VP6 578 586 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.00082536 95.815 By MS/MS By MS/MS 1 1 1.0892 0.91963 9.2388 2 Median NaN NaN NaN 0 0 Median 1.1637 0.98172 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0194 0.86148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20499000 9121500 11378000 0 0 0 18750000 8364900 10385000 0 0 0 1749000 756660 992350 0 0 0 0 0 0 106 3288 109 362;363 417;418 417 2 AADIDQEVKER PYIKDLFTCTIKRLKAADIDQEVKERAISC KRLKAADIDQEVKERAISCMGQIICNLGDN K A A E R A 2 1 0 2 0 1 2 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 11 1 1272.631 Q86VP6 Q86VP6 578 588 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2;3 5.6519E-05 142.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 1.0835 1.1654 31.281 10 Median 0.99981 1.0408 15.555 2 0 Median 1.3404 1.2558 NaN 1 0 Median 1.0313 1.1689 4.6397 3 0 Median NaN NaN NaN 0 0 Median 1.5219 1.6823 21.844 2 0 Median 0.88802 0.78106 43.497 2 0 Median 44815000 19502000 25313000 13796000 6152800 7643200 5359300 2251400 3107900 19036000 8401900 10634000 0 0 0 5518700 2090600 3428100 1105600 605160 500420 107 3288 110 364;365;366;367;368;369;370;371;372;373 419;420;421;422;423;424;425;426;427;428;429 419 11 AADIIDGLR EVIHRKALQRIYADKAADIIDGLRKNPSIA RIYADKAADIIDGLRKNPSIAVPIVLKRLK K A A L R K 2 1 0 2 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 9 0 942.51345 Q96ST3 Q96ST3 677 685 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00078048 98.299 By MS/MS By MS/MS 1 1 1.0964 1.206 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0964 1.206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5950400 3067400 2883000 0 0 0 0 0 0 5950400 3067400 2883000 0 0 0 0 0 0 0 0 0 108 3737 111 374;375 430;431;432 431 3 AADISLDNLVEGK QYGLGPYEAVTPLTKAADISLDNLVEGKRK TKAADISLDNLVEGKRKRRSNVSSPATPTA K A A G K R 2 0 1 2 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 13 0 1343.6933 A6NNK5;Q12888;H7BZY0 A6NNK5 1569 1581 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 5.5866E-05 87.298 By matching By MS/MS By matching 2 1 1 0.80046 0.85761 123.45 4 Median NaN NaN NaN 0 0 Median 0.93496 0.84504 213.51 2 0 Median 0.71757 0.79149 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89292 0.92926 NaN 1 0 Median NaN NaN NaN 0 0 Median 17112000 9973900 7137600 0 0 0 2762200 2117900 644270 13536000 7433800 6102500 0 0 0 813000 422190 390800 0 0 0 109 530 112 376;377;378;379 433;434 434 2 AADISLDNLVEGKR QYGLGPYEAVTPLTKAADISLDNLVEGKRK KAADISLDNLVEGKRKRRSNVSSPATPTAS K A A K R K 2 1 1 2 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 14 1 1499.7944 A6NNK5;Q12888;H7BZY0 A6NNK5 1569 1582 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 3.3831E-06 87.18 By MS/MS 1 0.69719 0.8359 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69719 0.8359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8047000 4437200 3609800 0 0 0 0 0 0 8047000 4437200 3609800 0 0 0 0 0 0 0 0 0 110 530 113 380 435;436 436 2 AADKLAPAQYIR EKSVSQKVAAAMPVRAADKLAPAQYIRYTP PVRAADKLAPAQYIRYTPSQQGVAFNSGAK R A A I R Y 4 1 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 12 1 1315.7248 Q13573;G3V3A4;G3V4X8 Q13573 167 178 SNW1 SNW domain-containing protein 1 yes no 3 4.7009E-07 116.55 By MS/MS 3 0.85998 0.97535 51.564 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85998 0.97535 51.564 3 1 Median NaN NaN NaN 0 0 Median 17681000 10557000 7123800 0 0 0 0 0 0 0 0 0 0 0 0 17681000 10557000 7123800 0 0 0 111 2826 114 381;382;383 437;438 438 1 AADLLAVHAVK EGESGECAVAESEDRAADLLAVHAVKIEAN SEDRAADLLAVHAVKIEANVNSVVTEEKDD R A A V K I 4 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1106.6448 Q8NFC6 Q8NFC6 1627 1637 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.00019806 74.92 By MS/MS By MS/MS 1 1 1.0159 1.0208 9.7971 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0232 1.0941 NaN 1 0 Median 1.0087 0.9525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11945000 6210500 5734300 0 0 0 0 0 0 10904000 5704100 5200200 1040400 506350 534080 0 0 0 0 0 0 112 3434 115 384;385 439;440;441 439 3 AADLNGDLTATR HTFKKMLPRDERRFKAADLNGDLTATREEF RFKAADLNGDLTATREEFTAFLHPEEFEHM K A A T R E 3 1 1 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 12 0 1216.6048 Q15293;E9PP27 Q15293 177 188 RCN1 Reticulocalbin-1 yes no 2 2.6215E-21 154.85 By MS/MS By MS/MS By MS/MS 2 2 1 1.3159 1.1279 15.055 4 Median 0.99406 0.99863 NaN 1 1 Median 1.3159 1.1267 17.369 2 1 Median NaN NaN NaN 0 0 Median 1.5227 1.3135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95248000 46390000 48858000 62197000 31386000 30811000 29958000 13756000 16202000 0 0 0 3093400 1248200 1845300 0 0 0 0 0 0 113 2940 116 386;387;388;389;390 442;443;444;445;446;447 442 6 AADLQLEMTQKPHK WLLCGPRRYASSSFKAADLQLEMTQKPHKK KAADLQLEMTQKPHKKPGPGEPLVFGKTFT K A A H K K 2 0 0 1 0 2 1 0 1 0 2 2 1 0 1 0 1 0 0 0 0 0 14 1 1608.8294 O15382;M0QZ10;M0QXF9 O15382 34 47 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 3;4 0.00042012 49.31 By MS/MS By MS/MS By matching 2 3 2 1.0257 0.92422 58.206 7 Median 0.62674 0.5842 9.6689 2 0 Median 1.0396 0.93882 5.4193 3 0 Median 0.5422 0.55478 124.31 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30808000 18150000 12658000 13019000 8070600 4948900 9383600 4423700 4959900 8405000 5656200 2748800 0 0 0 0 0 0 0 0 0 114 1543 117 391;392;393;394;395;396;397 448;449;450;451;452;453 451 6 AADMGNPVGQSGLGMAYLYGR IVPQSNETALHYFKKAADMGNPVGQSGLGM PVGQSGLGMAYLYGRGVQVNYDLALKYFQK K A A G R G 3 1 1 1 0 1 0 5 0 0 2 0 2 0 1 1 0 0 2 1 0 0 21 0 2126.9877 Q9UBV2 Q9UBV2 441 461 SEL1L Protein sel-1 homolog 1 yes yes 2 0.00067465 33.204 By MS/MS 1 0.86529 0.8566 NaN 1 Median 0.86529 0.8566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1964800 1059000 905760 1964800 1059000 905760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 115 4250 118 398 454 454 1 AADPPAENSSAPEAEQGGAE RRPENPKPQDGKETKAADPPAENSSAPEAE AENSSAPEAEQGGAE_______________ K A A A E - 6 0 1 1 0 1 4 2 0 0 0 0 0 0 3 2 0 0 0 0 0 0 20 0 1896.7973 P67809;H0Y449 P67809 305 324 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 5.439E-07 65.295 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8009600 0 0 0 0 0 2057000 0 0 0 0 0 1762400 0 0 3395800 0 0 794460 0 0 116 2627 119 399;400;401;402 455;456;457;458 455 4 AADQFDIYSSQQSK CGPGKPSCLNEDAMRAADQFDIYSSQQSKY RAADQFDIYSSQQSKYSHTVNHKPMVCQRQ R A A S K Y 2 0 0 2 0 3 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 0 14 0 1586.7213 Q7Z6I8;H0YAE0 Q7Z6I8 28 41 C5orf24 UPF0461 protein C5orf24 yes no 2 5.533E-08 115.29 By MS/MS 1 0.91006 0.9283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91006 0.9283 NaN 1 0 Median NaN NaN NaN 0 0 Median 15742000 8573700 7168000 0 0 0 0 0 0 0 0 0 0 0 0 15742000 8573700 7168000 0 0 0 117 3252 120 403 459;460 460 2 AADRLEQELLR QKRRLDKVRRKKEEKAADRLEQELLRDTVK KEEKAADRLEQELLRDTVKFGEVVLQPPEL K A A L R D 2 2 0 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 1 1312.7099 I3L0U5;Q6PK04 I3L0U5 192 202 CCDC137 Coiled-coil domain-containing protein 137 yes no 3 0.0016034 63.624 By MS/MS 1 2.2343 2.332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2343 2.332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3713300 1103200 2610100 0 0 0 0 0 0 3713300 1103200 2610100 0 0 0 0 0 0 0 0 0 118 1274 121 404 461 461 1 AADSQNSGEGNTGAAESSFSQEVSR TETEESMGGGEGNHRAADSQNSGEGNTGAA NTGAAESSFSQEVSREQQPSSASERQAPRA R A A S R E 4 1 2 1 0 2 3 3 0 0 0 0 0 1 0 6 1 0 0 1 0 0 25 0 2485.0589 P12270 P12270 2031 2055 TPR Nucleoprotein TPR yes yes 3 4.0695E-30 110.26 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.93743 0.95235 2.8474 5 Median 0.93743 0.93137 NaN 1 0 Median 1.1214 0.95235 NaN 1 0 Median 0.9069 0.9744 3.3789 2 0 Median 1.1328 0.98664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33380000 16213000 17167000 6749700 3401700 3347900 3624400 1811000 1813400 20048000 9687100 10361000 2957800 1313600 1644200 0 0 0 0 0 0 119 1978 122 405;406;407;408;409 462;463;464;465;466;467;468;469;470 466 8 AADTQVSETLKR ______________________________ ______________________________ M A A K R F 2 1 0 1 0 1 1 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 12 1 1317.6888 Q92616 Q92616 2 13 GCN1L1 Translational activator GCN1 yes yes 2 8.3506E-22 197.27 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2507 1.192 20 5 Median 1.2507 1.2508 NaN 1 0 Median 1.2436 1.1545 8.2961 2 0 Median NaN NaN NaN 0 0 Median 0.79901 0.77136 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3419 1.192 NaN 1 1 Median 82641000 35891000 46750000 24881000 10208000 14673000 51381000 22793000 28588000 0 0 0 1427200 824380 602840 0 0 0 4952100 2065900 2886200 120 3544 123 410;411;412;413;414;415 471;472;473;474;475;476;477;478;479 472 9 AADVEQLKPEEIK IEDTLMDTEEQEEFKAADVEQLKPEEIKSG FKAADVEQLKPEEIKSGTTAPLGFDEMEVE K A A I K S 2 0 0 1 0 1 3 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 13 1 1468.7773 Q9NU22 Q9NU22 5201 5213 MDN1 Midasin yes yes 3 2.7616E-07 101.39 By MS/MS 1 0.83868 0.95082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83868 0.95082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11030000 5967100 5062500 0 0 0 0 0 0 11030000 5967100 5062500 0 0 0 0 0 0 0 0 0 121 4112 124 416 480;481 481 2 AAEAAAAPAESAAPAAGEEPSKEEGEPK EQAAPGPAAGGEAPKAAEAAAAPAESAAPA PAAGEEPSKEEGEPKKTEAPAAPAAQETKS K A A P K K 11 0 0 0 0 0 7 2 0 0 0 2 0 0 4 2 0 0 0 0 0 0 28 1 2635.2249 P80723 P80723 122 149 BASP1 Brain acid soluble protein 1 yes yes 3 3.8762E-21 72.474 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 0.44983 0.45066 26.797 8 Median 0.43315 0.41023 23.513 2 0 Median 0.58144 0.54479 22.796 2 0 Median 0.32272 0.33914 21.135 2 1 Median 0.6182 0.61794 NaN 1 0 Median 0.41007 0.438 NaN 1 0 Median NaN NaN NaN 0 0 Median 90600000 58020000 32580000 23465000 15683000 7782200 11672000 6642400 5029500 13315000 9639500 3675000 11654000 6550800 5103100 30495000 19504000 10990000 0 0 0 122 2649 125 417;418;419;420;421;422;423;424 482;483;484;485;486;487;488;489;490;491;492;493;494;495;496;497;498;499 493 18 AAEAADLGLGAAVPVELRR ______________________________ ADLGLGAAVPVELRRERRMVCVEYPGVVRD M A A R R E 6 2 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 19 1 1878.0323 Q9Y5Q8;Q5T7U1 Q9Y5Q8 2 20 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 7.9285E-07 59.57 By MS/MS 2 0.85072 0.91884 8.8885 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85072 0.91884 8.8885 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14722000 8299800 6422300 0 0 0 0 0 0 14722000 8299800 6422300 0 0 0 0 0 0 0 0 0 123 4466 126 425;426 500;501 501 2 AAEAAINILK TCTGEGTSKKLAKHRAAEAAINILKANASI LAKHRAAEAAINILKANASIW_________ R A A L K A 4 0 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1012.5917 F8WEG8;G5E9Q4;C9JMM3;O75569 F8WEG8 80 89 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 2 0.0028319 71.501 By MS/MS 2 0.95831 0.88035 0.92816 2 Median 0.95831 0.88035 0.92816 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27701000 13855000 13845000 27701000 13855000 13845000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124 710 127 427;428 502;503 502 2 AAEAAPPTQEAQGETEPTEQAPDALEQAADTSR IMPTLEEWEALCQQKAAEAAPPTQEAQGET EQAPDALEQAADTSRRNAETPEATTQQETD K A A S R R 9 1 0 2 0 4 6 1 0 0 1 0 0 0 4 1 4 0 0 0 0 0 33 0 3379.5288 Q8N163;H0YB24;G3V119 Q8N163 447 479 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 1.434E-13 62.666 By matching By MS/MS By MS/MS 1 2 1 0.44205 0.44847 5.8099 4 Median 0.44905 0.4342 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41041 0.44402 5.9793 2 1 Median 0.56544 0.48274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21828000 15783000 6045700 4870800 3138300 1732500 0 0 0 16036000 12068000 3968100 921510 576440 345070 0 0 0 0 0 0 125 3354 128 429;430;431;432 504;505;506 505 3 AAEAAPPTQEAQGETEPTEQAPDALEQAADTSRR IMPTLEEWEALCQQKAAEAAPPTQEAQGET QAPDALEQAADTSRRNAETPEATTQQETDT K A A R R N 9 2 0 2 0 4 6 1 0 0 1 0 0 0 4 1 4 0 0 0 0 0 34 1 3535.6299 Q8N163;H0YB24;G3V119 Q8N163 447 480 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.0032796 26.329 By MS/MS By MS/MS 1 3 0.40526 0.47109 28.507 4 Median 0.45007 0.50003 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36492 0.44382 33.932 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32371000 21051000 11320000 6701700 4356500 2345200 0 0 0 25669000 16694000 8975100 0 0 0 0 0 0 0 0 0 126 3354 129 433;434;435;436 507;508 508 2 AAEADGPLKR ______________________________ ______________________________ M A A K R L 3 1 0 1 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 10 1 1026.5458 J3QS48;I3L295;J3KT75;J3QW43;J3QRD5;O75352;J3KSI4;I3L1D2;I3L4E0 J3QS48 2 11 MPDU1 Mannose-P-dolichol utilization defect 1 protein yes no 2 0.00046644 97.635 By MS/MS By MS/MS 2 2 0.79653 0.77533 14.527 4 Median 0.68944 0.70569 1.1601 2 0 Median 0.95839 0.89506 8.1607 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17981000 9284200 8697000 4381300 2464600 1916800 13600000 6819600 6780200 0 0 0 0 0 0 0 0 0 0 0 0 127 1281 130 437;438;439;440 509;510 510 2 AAEAEQEMQR KAQITEEEAKLLAQKAAEAEQEMQRIKATA LLAQKAAEAEQEMQRIKATAIRTEEEKRLM K A A Q R I 3 1 0 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1161.5084 P35240 P35240 402 411 NF2 Merlin yes yes 2 0.0010001 69.423 By matching By MS/MS 1 1 0.99104 1.0102 4.0911 2 Median 1.0489 1.0399 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93637 0.98141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2635200 1406800 1228400 1421800 698640 723200 0 0 0 1213400 708150 505250 0 0 0 0 0 0 0 0 0 128 2234 131 441;442 511;512 511 2 AAEAEVELSAR STLASRLERQGAELKAAEAEVELSARRLRA AELKAAEAEVELSARRLRAWGARVQAQGHT K A A A R R 4 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1144.5724 Q8IZ83;F5H4B6 Q8IZ83 619 629 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 2 0.00015337 105.4 By MS/MS By MS/MS 1 1 1.2117 1.1008 7.4257 2 Median 1.2182 1.1601 NaN 1 1 Median 1.2053 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9516400 4035800 5480600 6129100 2533600 3595500 3387300 1502200 1885000 0 0 0 0 0 0 0 0 0 0 0 0 129 3348 132 443;444 513;514;515 514 3 AAEAGGAEEQYGFLTTPTK EKMEAEDYVMAVVDKAAEAGGAEEQYGFLT GGAEEQYGFLTTPTKQLGAQSPGREPASSI K A A T K Q 4 0 0 0 0 1 3 3 0 0 1 1 0 1 1 0 3 0 1 0 0 0 19 0 1939.9163 P46821 P46821 1052 1070 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 5.2594E-26 130.24 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 1 0.98164 0.92419 13.076 9 Median 0.97069 0.97663 15.074 3 2 Plateau NaN NaN NaN 0 0 Median 0.88368 0.95901 15.28 2 0 Median 1.1268 1.0601 8.3288 2 0 Median 0.78219 0.8262 NaN 1 0 Median 1.067 0.919 NaN 1 0 Median 74508000 37610000 36898000 31657000 15710000 15947000 0 0 0 33308000 17177000 16131000 6526000 3140000 3386100 2507300 1339600 1167700 510120 242970 267150 130 2347 133 445;446;447;448;449;450;451;452;453 516;517;518;519;520;521;522;523;524 517 9 AAEALHGEADSSGVLAAVDATVNK PWCGHCKKMKPEFEKAAEALHGEADSSGVL DSSGVLAAVDATVNKALAERFHISEFPTLK K A A N K A 7 0 1 2 0 0 2 2 1 0 2 1 0 0 0 2 1 0 0 3 0 0 24 0 2295.1343 Q14554 Q14554 318 341 PDIA5 Protein disulfide-isomerase A5 yes yes 3 1.2472E-16 70.917 By MS/MS By matching 1 1 1.0082 0.94241 16.426 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84313 0.83907 NaN 1 0 Median 1.2056 1.0585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6553700 3401500 3152100 0 0 0 0 0 0 6207700 3249500 2958200 345930 152030 193900 0 0 0 0 0 0 131 2880 134 454;455 525 525 1 AAEDDEDDDVDTK DGDEDEEAESATGKRAAEDDEDDDVDTKKQ KRAAEDDEDDDVDTKKQKTDEDD_______ R A A T K K 2 0 0 6 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 13 0 1436.5427 B8ZZQ6;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 87 99 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 2 0.00087106 63.283 By MS/MS By MS/MS By matching 1 1 1 0.97289 0.89275 9.4557 3 Plateau 0.97289 0.91847 NaN 1 0 Median 0.9168 0.79879 NaN 1 0 Median 0.76136 0.76696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3117400 1556600 1560700 2031000 996500 1034500 865810 455660 410150 220540 104460 116080 0 0 0 0 0 0 0 0 0 132 650 135 456;457;458 526;527;528 528 3 AAEDDEDDDVDTKK DGDEDEEAESATGKRAAEDDEDDDVDTKKQ RAAEDDEDDDVDTKKQKTDEDD________ R A A K K Q 2 0 0 6 0 0 2 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 14 1 1564.6377 B8ZZQ6;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 87 100 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 3 0.00031349 49.31 By matching By MS/MS By matching 1 2 1 1.0393 0.97296 1.0486 4 Median 0.97886 0.9791 NaN 1 0 Median 1.1113 0.97296 0.38529 2 0 Median 0.93039 0.95606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10140000 4902500 5238000 6952300 3362000 3590300 2304900 1098500 1206500 883260 442020 441240 0 0 0 0 0 0 0 0 0 133 650 136 459;460;461;462 529;530 530 2 AAEDLFVNIR SCLSLFRDEVFHIHKAAEDLFVNIRGYNKR FHIHKAAEDLFVNIRGYNKRINDIRECKEA K A A I R G 2 1 1 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1146.6033 Q9Y2A7 Q9Y2A7 306 315 NCKAP1 Nck-associated protein 1 yes yes 2 0.00076705 71.501 By MS/MS By MS/MS 2 1 1.1554 0.99555 22.744 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1119 1.2087 27.432 2 0 Median 1.1554 0.98395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13729000 6173400 7555200 0 0 0 0 0 0 11701000 5275100 6425900 2027700 898350 1129300 0 0 0 0 0 0 134 4383 137 463;464;465 531;532;533;534 532 4 AAEDSPYWVSPAYSK TDDSNPREAILRHAKAAEDSPYWVSPAYSK AAEDSPYWVSPAYSKTQPKTMFAQVESDDE K A A S K T 3 0 0 1 0 0 1 0 0 0 0 1 0 0 2 3 0 1 2 1 0 0 15 0 1669.7624 Q9NW82 Q9NW82 612 626 WDR70 WD repeat-containing protein 70 yes yes 2 0.00034378 55.452 By MS/MS By MS/MS 1 1 0.64742 0.65584 8.203 2 Median 0.64092 0.61888 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65398 0.69501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7388600 4153700 3234800 3285300 1997000 1288300 0 0 0 4103300 2156700 1946600 0 0 0 0 0 0 0 0 0 135 4147 138 466;467 535;536 536 2 AAEEEDEADPKR EEEEEEDDEGPALKRAAEEEDEADPKRQKT LKRAAEEEDEADPKRQKTENGASA______ R A A K R Q 3 1 0 2 0 0 4 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 12 1 1358.595 P20962 P20962 82 93 PTMS Parathymosin yes yes 2;3 0.00015052 64.55 By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 0.66081 0.65501 24.741 8 Median 0.67568 0.68639 8.784 4 0 Linear 1.1237 0.99138 2.7838 2 0 Median 0.62692 0.63917 NaN 1 0 Median 1.1383 1.0076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10370000 5566500 4803200 5138900 2987500 2151400 4593000 2189100 2403800 517480 324760 192720 120340 65091 55248 0 0 0 0 0 0 136 2085 139 468;469;470;471;472;473;474;475 537;538;539;540;541;542;543 541 7 AAEEFVNVYYTTMDK MASVDFKTYVDQACRAAEEFVNVYYTTMDK AAEEFVNVYYTTMDKRRRLLSRLYMGTATL R A A D K R 2 0 1 1 0 0 2 0 0 0 0 1 1 1 0 0 2 0 2 2 0 0 15 0 1779.8026 Q9UKK6 Q9UKK6 16 30 NXT1 NTF2-related export protein 1 yes yes 2 0.00032688 66.262 By MS/MS 1 0.91195 0.90827 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91195 0.90827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2055700 1078500 977260 0 0 0 0 0 0 2055700 1078500 977260 0 0 0 0 0 0 0 0 0 137 4311 140 476 544;545 545 2 AAEEFVNVYYTTMDKR MASVDFKTYVDQACRAAEEFVNVYYTTMDK AEEFVNVYYTTMDKRRRLLSRLYMGTATLV R A A K R R 2 1 1 1 0 0 2 0 0 0 0 1 1 1 0 0 2 0 2 2 0 0 16 1 1935.9037 Q9UKK6 Q9UKK6 16 31 NXT1 NTF2-related export protein 1 yes yes 3 0.0008006 35.757 By MS/MS 1 1.1261 1.1698 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1261 1.1698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7780900 3583400 4197600 0 0 0 0 0 0 7780900 3583400 4197600 0 0 0 0 0 0 0 0 0 138 4311 141 477 546 546 1 AAEEIGIK GNRDDSNLYINVKLKAAEEIGIKATHIKLP YINVKLKAAEEIGIKATHIKLPRTTTESEV K A A I K A 2 0 0 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 8 0 829.45453 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 59 66 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.011309 57.177 By matching By MS/MS 1 3 1.2368 1.0736 8.9197 4 Linear 1.012 0.97941 NaN 1 0 Median 1.2417 1.0561 10.86 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14632000 7053000 7578700 1374100 506610 867500 13258000 6546400 6711200 0 0 0 0 0 0 0 0 0 0 0 0 139 1968 142 478;479;480;481 547 547 1 AAEEPQQQK ______________________________ ______________________________ M A A Q K Q 2 0 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 9 0 1027.4934 J3KR44;Q96FW1;F5H6Q1;F5GYJ8;F5H3F0 J3KR44 2 10 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2 0.025305 49.358 By MS/MS 1 1.0674 1.048 NaN 1 Median 1.0674 1.048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1886900 866950 1019900 1886900 866950 1019900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 140 1322 143 482 548 548 1 AAEEPSKVEEK AAVAPEKPPASDETKAAEEPSKVEEKKAEE DETKAAEEPSKVEEKKAEEAGASAAACEAP K A A E K K 2 0 0 0 0 0 4 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 11 1 1215.5983 P29966 P29966 257 267 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 3 0.053125 16.942 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.89097 0.83921 23.309 5 Median 1.0104 0.95744 25.01 2 0 Median 0.89097 0.83921 NaN 1 0 Median 0.94892 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57728 0.66053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1928100 1002600 925440 513570 257910 255660 941970 504430 437550 348910 180840 168080 0 0 0 123630 59468 64163 0 0 0 141 2175 144 483;484;485;486;487 549;550;551 550 3 AAEEQGDDQDSEK RSGDETPGSEVPGDKAAEEQGDDQDSEKSK DKAAEEQGDDQDSEKSKPAGSDGERRGVKR K A A E K S 2 0 0 3 0 2 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 13 0 1420.559 Q1KMD3;H3BQZ7 Q1KMD3 175 187 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0036405 43.512 By MS/MS 1 0.86155 0.88385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86155 0.88385 NaN 1 0 Median NaN NaN NaN 0 0 Median 1012700 524440 488310 0 0 0 0 0 0 0 0 0 0 0 0 1012700 524440 488310 0 0 0 142 3002 145 488 552;553 552 2 AAEFLQMLEAIK KLMIQGEEEANDVWKAAEFLQMLEAIKALE VWKAAEFLQMLEAIKALEVRNKENSAPLEE K A A I K A 3 0 0 0 0 1 2 0 0 1 2 1 1 1 0 0 0 0 0 0 0 0 12 0 1362.7217 P52739;D6RFI6;D6RAT8;D6RBK1;D6RJH2;D6R9I2 P52739 108 119 ZNF131 Zinc finger protein 131 yes no 2 0.032405 27.303 By MS/MS 1 0.97455 1.0346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97455 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2384000 1162100 1221900 0 0 0 0 0 0 2384000 1162100 1221900 0 0 0 0 0 0 0 0 0 143 2456 146 489 554 554 1 AAEFYINYVTR DVRLPANLLYKYLNKAAEFYINYVTRSTQI YLNKAAEFYINYVTRSTQIENQHQGAQDTS K A A T R S 2 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 2 1 0 0 11 0 1345.6667 Q9NVR2 Q9NVR2 202 212 INTS10 Integrator complex subunit 10 yes yes 2 0.0011704 60.518 By MS/MS 1 1.158 1.1899 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.158 1.1899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6977300 3344700 3632600 0 0 0 0 0 0 6977300 3344700 3632600 0 0 0 0 0 0 0 0 0 144 4139 147 490 555;556 556 2 AAEGVSAADMAK NLYLAREGLIRAGTKAAEGVSAADMAKRER GTKAAEGVSAADMAKRERFELLKHQKLKDQ K A A A K R 5 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 12 0 1119.523 Q9NW13 Q9NW13 454 465 RBM28 RNA-binding protein 28 yes yes 2 0.024956 30.612 By MS/MS 1 1.6425 1.3685 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6425 1.3685 NaN 1 0 Median 828930 326660 502280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 828930 326660 502280 145 4145 148 491 557 557 1 AAEIYGVTHTR EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQ YIKRAAEIYGVTHTRGIYQKAIEVLSDEHA R A A T R G 2 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 0 1 1 0 0 11 0 1216.62 Q9HCS7 Q9HCS7 639 649 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.0085156 40.352 By MS/MS By matching 1 1 1.0236 0.96983 14.902 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2608 1.0776 NaN 1 0 Median 0.83096 0.87284 NaN 1 0 Median NaN NaN NaN 0 0 Median 3628000 1762000 1866000 0 0 0 0 0 0 0 0 0 640570 317460 323100 2987500 1444500 1542900 0 0 0 146 4032 149 492;493 558 558 1 AAELAVQNEVGLVDNPLK SKKPGTAVVEFATVKAAELAVQNEVGLVDN LAVQNEVGLVDNPLKISWLEGQPQDAVGRS K A A L K I 3 0 2 1 0 1 2 1 0 0 3 1 0 0 1 0 0 0 0 3 0 0 18 0 1879.0051 Q9NVM6 Q9NVM6 226 243 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 6.9491E-06 59.57 By MS/MS By matching 1 2 0.79468 0.66454 9.9919 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64533 0.61743 NaN 1 0 Median 0.84045 0.7071 8.7791 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6767900 3800500 2967400 0 0 0 0 0 0 3775700 2265800 1509800 2992300 1534700 1457600 0 0 0 0 0 0 147 4135 150 494;495;496 559;560 560 2 AAELETDIR QAVRHLPQSVRIYIRAAELETDIRAKKRVL VRIYIRAAELETDIRAKKRVLRKALEHVPN R A A I R A 2 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1016.5138 O94906 O94906 379 387 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00025233 114.28 By MS/MS By MS/MS By MS/MS 1 1 1 0.99745 1.0583 34.817 3 Median 1.6738 1.6212 NaN 1 1 Median 0.97208 0.81318 NaN 1 1 Median 0.99745 1.0583 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26727000 12421000 14306000 3686600 1388800 2297800 10235000 4817300 5417900 12805000 6214600 6590400 0 0 0 0 0 0 0 0 0 148 1735 151 497;498;499 561;562;563 562 3 AAELFVETIAK DVTLAGQEAIFILARAAELFVETIAKDAYC ILARAAELFVETIAKDAYCCAQQGKRKTLQ R A A A K D 3 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1190.6547 Q9NR33 Q9NR33 70 80 POLE4 DNA polymerase epsilon subunit 4 yes yes 2 0.0021689 54.982 By matching By MS/MS 1 1 1.1395 1.1126 9.0932 2 Median 1.0505 1.0433 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2361 1.1865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10420000 4542800 5877200 2315700 1104100 1211700 0 0 0 8104400 3438800 4665600 0 0 0 0 0 0 0 0 0 149 4078 152 500;501 564;565 564 2 AAELIANSLATAGDGLIELR QQKKAAIISAEGDSKAAELIANSLATAGDG ANSLATAGDGLIELRKLEAAEDIAYQLSRS K A A L R K 5 1 1 1 0 0 2 2 0 2 4 0 0 0 0 1 1 0 0 0 0 0 20 0 1997.0793 P35232;C9JW96 P35232 220 239 PHB Prohibitin yes no 3 0.004888 24.3 By MS/MS 1 1.4053 1.1687 NaN 1 Median NaN NaN NaN 0 0 Median 1.4053 1.1687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10594000 4360400 6233700 0 0 0 10594000 4360400 6233700 0 0 0 0 0 0 0 0 0 0 0 0 150 2233 153 502 566 566 1 AAELLQDEYSGR ILCDLHDGFSGVGAKAAELLQDEYSGRGII GAKAAELLQDEYSGRGIITWGLLPGPYHRG K A A G R G 2 1 0 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 1 0 0 0 12 0 1350.6416 A0A3B3IUD2;Q9BUK6 A0A3B3IUD2 245 256 MSTO1 Protein misato homolog 1 yes no 2 0.00041268 85.958 By MS/MS 1 0.74701 0.71672 NaN 1 Median 0.74701 0.71672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7532200 4721300 2810800 7532200 4721300 2810800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 151 447 154 503 567 567 0 AAELQAQWER LVAEGHPGASQASARAAELQAQWERLEALA QASARAAELQAQWERLEALAEERAQRLAQA R A A E R L 3 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 10 0 1200.5887 O15020 O15020 722 731 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00011626 122.13 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.95586 0.85444 21.836 6 Median 0.90065 0.87738 NaN 1 0 Median 1.2858 1.0815 NaN 1 1 Median 0.6195 0.67526 NaN 1 0 Median 0.80097 0.70307 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1824 0.97959 23.078 2 1 Median 21625000 11748000 9877200 3550600 1922900 1627700 1905300 888510 1016800 12370000 7337200 5033100 1997000 856340 1140700 0 0 0 1801500 742570 1058900 152 1512 155 504;505;506;507;508;509 568;569;570;571 569 3 AAEMLSQLDLFSR IVQEKVFKGLDLLEKAAEMLSQLDLFSRNE EKAAEMLSQLDLFSRNEDLEEIASTDLKYL K A A S R N 2 1 0 1 0 1 1 0 0 0 3 0 1 1 0 2 0 0 0 0 0 0 13 0 1479.7392 P78318 P78318 52 64 IGBP1 Immunoglobulin-binding protein 1 yes yes 2 0.00040822 74.162 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.4928 1.5345 23.774 4 Median 1.333 1.3613 NaN 1 0 Median 1.2434 1.0741 NaN 1 0 Median 1.6717 1.7297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0314 1.7908 NaN 1 0 Median 5152700 1990200 3162500 1181700 497870 683830 3147600 1274600 1873000 751480 196240 555240 0 0 0 0 0 0 71953 21512 50440 153 2638 156 510;511;512;513 572;573;574;575;576 576 5 AAEMMASLLK ELQKLKEMTNHQKKRAAEMMASLLKDLAEI HQKKRAAEMMASLLKDLAEIGIAVGNNDVK R A A L K D 3 0 0 0 0 0 1 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 10 0 1063.5406 P33176 P33176 551 560 KIF5B Kinesin-1 heavy chain yes yes 2 0.005028 67.993 By MS/MS By MS/MS 2 1 1.0984 0.99543 1.4383 2 Median 1.0396 1.0056 NaN 1 1 Median 1.1606 0.98536 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18500000 8572700 9927500 12101000 5691900 6408700 6399500 2880700 3518800 0 0 0 0 0 0 0 0 0 0 0 0 154 2221 157 514;515;516 577;578;579 579 3 AAEQYTPK QELSFAARSFYYKLRAAEQYTPKAKYHGNV SFYYKLRAAEQYTPKAKYHGNVMLLRAKTG R A A P K A 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 8 0 906.4447 P49327;A0A0U1RQF0 P49327 2429 2436 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.066188 31.289 By MS/MS 1 1.1477 0.99803 NaN 1 Median NaN NaN NaN 0 0 Median 1.1477 0.99803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 408820 229620 179200 0 0 0 408820 229620 179200 0 0 0 0 0 0 0 0 0 0 0 0 155 2377 158 517 580 580 1 AAESAEIEPR LQDTEISPRQNRRTRAAESAEIEPRNKRNR NRRTRAAESAEIEPRNKRNRN_________ R A A P R N 3 1 0 0 0 0 3 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 10 0 1071.5197 Q9NS91 Q9NS91 480 489 RAD18 E3 ubiquitin-protein ligase RAD18 yes yes 2 0.0011606 67.993 By MS/MS 1 0.82354 0.88191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82354 0.88191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2492700 1310700 1181900 0 0 0 0 0 0 2492700 1310700 1181900 0 0 0 0 0 0 0 0 0 156 4099 159 518 581 581 1 AAESLADPTEYENLFPGLK VVKLWRENLSKVNQKAAESLADPTEYENLF LADPTEYENLFPGLKEAFVVEEWVKETHAD K A A L K E 3 0 1 1 0 0 3 1 0 0 3 1 0 1 2 1 1 0 1 0 0 0 19 0 2064.0052 P35606 P35606 784 802 COPB2 Coatomer subunit beta yes yes 2 1.0329E-09 92.925 By MS/MS By MS/MS By matching 2 2 2 0.77278 0.72479 12.239 6 Median 0.79539 0.79233 2.3863 2 0 Median 0.86872 0.77296 19.864 2 0 Median NaN NaN NaN 0 0 Median 0.75869 0.66705 1.5283 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17441000 9140700 8300600 14042000 7774900 6266700 3044100 1185700 1858400 0 0 0 355600 180050 175550 0 0 0 0 0 0 157 2246 160 519;520;521;522;523;524 582;583;584;585 582 4 AAESLTAIPEPASPQLLETPIHASQIQK PKSQASRNQRWGAVRAAESLTAIPEPASPQ PQLLETPIHASQIQKVEPAGRSRFTPELQP R A A Q K V 5 0 0 0 0 3 3 0 1 3 3 1 0 0 4 3 2 0 0 0 0 0 28 0 2939.5604 Q14676 Q14676 1763 1790 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 5.3601E-26 87.792 By MS/MS By matching By MS/MS 5 3 1 0.55597 0.55118 7.7124 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5052 0.54852 8.1661 5 1 Median 0.65912 0.56573 9.5306 3 0 Median 0.55914 0.58619 NaN 1 0 Median NaN NaN NaN 0 0 Median 84365000 61540000 22825000 0 0 0 0 0 0 77114000 57223000 19891000 2241400 1283200 958260 5009500 3033400 1976100 0 0 0 158 2887 161 525;526;527;528;529;530;531;532;533 586;587;588;589;590;591 589 6 AAESVSKPDVSEEAPGPSK RRLRAKLEKKTKKPKAAESVSKPDVSEEAP VSKPDVSEEAPGPSKVKTGKPEEASLDSRE K A A S K V 3 0 0 1 0 0 3 1 0 0 0 2 0 0 3 4 0 0 0 2 0 0 19 1 1883.9113 Q9BY42;A0A0A0MQR2;A2A2L5 Q9BY42 204 222 RTFDC1 Protein RTF2 homolog yes no 3 0.00054045 32.981 By MS/MS By MS/MS By MS/MS 1 1 2 0.66998 0.6423 16.423 4 Median NaN NaN NaN 0 0 Median 0.92873 0.83701 NaN 1 0 Median 0.66034 0.69198 NaN 1 0 Median 0.66998 0.59243 0.89411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15811000 9054300 6756400 0 0 0 1564200 773620 790540 3679400 2008600 1670800 10567000 6272000 4295100 0 0 0 0 0 0 159 145 162 534;535;536;537 592;593;594;595;596;597;598 597 7 AAETIIDTK MNRVGNESLNRAVAKAAETIIDTKGVTALV NRAVAKAAETIIDTKGVTALVSDAIHNDLQ K A A T K G 2 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 2 0 0 0 0 0 9 0 960.51278 Q9GZS1 Q9GZS1 171 179 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2 0.0545 43.808 By MS/MS 1 0.54198 0.53549 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54198 0.53549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4011500 2257000 1754500 0 0 0 0 0 0 4011500 2257000 1754500 0 0 0 0 0 0 0 0 0 160 3913 163 538 599 599 1 AAETQTLNFGPEWLR ______________________________ AAETQTLNFGPEWLRALSSGGSITSPPLSP M A A L R A 2 1 1 0 0 1 2 1 0 0 2 0 0 1 1 0 2 1 0 0 0 0 15 0 1731.858 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2 Q6Y7W6 2 16 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 2 0.00037926 50.284 By matching By matching By MS/MS 1 2 1 0.99158 0.98466 16.617 4 Median 1.053 1.0639 NaN 1 0 Median 1.1326 1.0024 26.559 2 0 Median 0.84286 0.91133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2582000 1348500 1233600 1004300 503460 500840 399990 201180 198810 1177700 643820 533900 0 0 0 0 0 0 0 0 0 161 3192 164 539;540;541;542 600 600 1 AAEVPNEELINLLLK EPQTCKSMKGSELKKAAEVPNEELINLLLK AAEVPNEELINLLLKFEIKEVILEFTKQQK K A A L K F 2 0 2 0 0 0 3 0 0 1 4 1 0 0 1 0 0 0 0 1 0 0 15 0 1664.9349 Q709C8 Q709C8 900 914 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.038682 24.382 By MS/MS 1 0.56588 0.56304 NaN 1 Median 0.56588 0.56304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 999890 637570 362320 999890 637570 362320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 162 3205 165 543 601 601 1 AAEWQLDQPSWSGR HVYRIPPRATNRGYRAAEWQLDQPSWSGRL RAAEWQLDQPSWSGRLRITAKGQMAYIKLE R A A G R L 2 1 0 1 0 2 1 1 0 0 1 0 0 0 1 2 0 2 0 0 0 0 14 0 1629.7536 Q9NVZ3;H0Y970;D6RAN6;F6SKB8 Q9NVZ3 32 45 NECAP2 Adaptin ear-binding coat-associated protein 2 yes no 2 0.010058 48.004 By MS/MS 1 1.0035 0.95973 NaN 1 Median 1.0035 0.95973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3507800 1605700 1902100 3507800 1605700 1902100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163 4143 166 544 602 602 1 AAFALGGLGSGFASNR AQAAAERLGYPVLVRAAFALGGLGSGFASN AFALGGLGSGFASNREELSALVAPAFAHTS R A A N R E 4 1 1 0 0 0 0 4 0 0 2 0 0 2 0 2 0 0 0 0 0 0 16 0 1494.7579 F8VPD4;P27708 F8VPD4 556 571 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 1.8873E-10 108.56 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.3536 1.2587 23.792 5 Median 1.5636 1.495 24.339 2 0 Median 1.0683 0.91081 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3536 1.1853 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5371 1.2603 NaN 1 0 Median 17875000 7682800 10193000 8086000 2938900 5147100 9325000 4535600 4789400 0 0 0 274880 120530 154350 0 0 0 189510 87721 101790 164 1057 167 545;546;547;548;549 603;604;605;606 603 4 AAFAMVTHVK PSITNVINLADSHDRAAFAMVTHVKQEPRE DSHDRAAFAMVTHVKQEPRERENSESKEED R A A V K Q 3 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 2 0 0 10 0 1073.5692 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2516 2525 TRRAP Transformation/transcription domain-associated protein yes no 2 0.023306 55.549 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 165 991 168 550 607 607 1 AAFAPFGR FVGDLSPEITTEDIKAAFAPFGRISDARVV ITTEDIKAAFAPFGRISDARVVKDMATGKS K A A G R I 3 1 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 8 0 835.43407 C9JTN7;H7BY49;F8W8I6;P31483;E5RGV5 C9JTN7 113 120 TIA1 Nucleolysin TIA-1 isoform p40 no no 2 0.0034959 92.692 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1 1 1.0223 0.9713 26.756 10 Median 1.5009 1.5174 NaN 1 0 Median 1.4199 1.2524 NaN 1 0 Median 0.81003 0.88014 19.459 3 0 Median 1.0522 0.88981 28.047 3 0 Median 0.71509 0.76889 NaN 1 0 Median 1.509 1.2596 NaN 1 0 Median 26017000 13539000 12478000 782620 371880 410730 485560 218700 266870 17159000 9527400 7631700 5419300 2245600 3173700 1886000 1042800 843160 284470 132810 151660 166 724;1086 169 551;552;553;554;555;556;557;558;559;560 608;609;610;611;612;613 610 6 AAFAVEPQGPALGSEPMMLGSPTSPK ______________________________ LGSEPMMLGSPTSPKPGVNAQFLPGFLMGD M A A P K P 4 0 0 0 0 1 2 3 0 0 2 1 2 1 5 3 1 0 0 1 0 0 26 0 2569.2556 Q8NFH5;F8WCF5;F8WEL4 Q8NFH5 2 27 NUP35 Nucleoporin NUP53 yes no 3 3.7807E-07 49.287 By MS/MS 1 0.41706 0.39891 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41706 0.39891 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3449100 2549100 900030 0 0 0 0 0 0 3449100 2549100 900030 0 0 0 0 0 0 0 0 0 167 3437 170 561 614 614 1 AAFDDAIAELDTLSEESYK YEILNSPDRACRLAKAAFDDAIAELDTLSE DAIAELDTLSEESYKDSTLIMQLLRDNLTL K A A Y K D 4 0 0 3 0 0 3 0 0 1 2 1 0 1 0 2 1 0 1 0 0 0 19 0 2086.9583 P62258;K7EM20 P62258 197 215 YWHAE 14-3-3 protein epsilon yes no 2 1.1309E-07 69.602 By matching By matching By MS/MS 1 1 2 1.0708 0.97095 3.5813 4 Median 0.93806 0.92682 NaN 1 0 Median 1.1163 0.94743 NaN 1 0 Median 1.0708 0.99506 0.00052557 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470700 1568500 1902200 255370 129840 125540 597390 260670 336720 2617900 1178000 1439900 0 0 0 0 0 0 0 0 0 168 2576 171 562;563;564;565 615 615 1 AAFGEEVDAVDTGISR LEKEGSLLSKQEESKAAFGEEVDAVDTGIS AFGEEVDAVDTGISRETSSDVALASHILTA K A A S R E 3 1 0 2 0 0 2 2 0 1 0 0 0 1 0 1 1 0 0 2 0 0 16 0 1635.774 O00273 O00273 214 229 DFFA DNA fragmentation factor subunit alpha yes yes 2 2.1872E-05 83.617 By MS/MS By matching By MS/MS By matching 2 3 1 1 1.1518 1.073 13.02 7 Median 0.88525 0.86601 7.1567 2 0 Median 1.2701 1.073 7.4979 3 0 Median 1.0393 1.1322 NaN 1 0 Median 1.319 1.1411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31643000 13718000 17925000 14297000 5907000 8389900 6433000 2864300 3568800 10375000 4726700 5648100 538120 219570 318550 0 0 0 0 0 0 169 1454 172 566;567;568;569;570;571;572 616;617;618;619 617 4 AAFGGSGGRGSSSGGGYSSGSSSYGSGGR VSVTSSTISSNVASKAAFGGSGGRGSSSGG GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS K A A G R Q 2 2 0 0 0 0 0 12 0 0 0 0 0 1 0 10 0 0 2 0 0 0 29 1 2500.0599 CON__P35908;CON__P35908v2;P35908 CON__P35908 522 550 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 1.1453E-34 102.57 By MS/MS By MS/MS By MS/MS By MS/MS 10 2 1 1 0.047031 0.042963 30.484 4 Median NaN NaN NaN 0 0 Median 0.04431 0.039677 34.542 3 3 Median NaN NaN NaN 0 0 Median 0.049919 0.04652 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68151000 67642000 509440 0 0 0 60089000 59651000 438180 0 0 0 5637000 5565700 71265 1666300 1666300 0 759470 759470 0 + 170 764;765 173 573;574;575;576;577;578;579;580;581;582;583;584;585;586 620;621;622;623;624;625;626;627;628;629;630;631;632;633 624 14 AAFGILSYEHRPLK ______________________________ MAAFGILSYEHRPLKRPRLGPPDVYPQDPK M A A L K R 2 1 0 0 0 0 1 1 1 1 2 1 0 1 1 1 0 0 1 0 0 0 14 1 1600.8726 Q93074 Q93074 2 15 MED12 Mediator of RNA polymerase II transcription subunit 12 yes yes 3 0.0010351 48.625 By MS/MS By matching 1 1 0.91526 0.9846 6.1376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85778 1.0283 NaN 1 0 Median 0.97659 0.94279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10404000 5508700 4895600 0 0 0 0 0 0 10299000 5463600 4835400 105350 45091 60259 0 0 0 0 0 0 171 3578 174 587;588 634 634 1 AAFGISDSYVDGSSFDPQR HQLAELNEKKNERLRAAFGISDSYVDGSSF ISDSYVDGSSFDPQRRAREAKQPAPEPPKP R A A Q R R 2 1 0 3 0 1 0 2 0 1 0 0 0 2 1 4 0 0 1 1 0 0 19 0 2017.9017 Q9UQ35;I3L4D8;I3L1I8;I3L182;A0A087X1W1;I3L1C0 Q9UQ35 137 155 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 1.1346E-07 71.607 By MS/MS 1 1.0521 1.0516 NaN 1 Median 1.0521 1.0516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5595100 2556600 3038500 5595100 2556600 3038500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 172 4359 175 589 635;636 635 2 AAFGISDSYVDGSSFDPQRR HQLAELNEKKNERLRAAFGISDSYVDGSSF SDSYVDGSSFDPQRRAREAKQPAPEPPKPY R A A R R A 2 2 0 3 0 1 0 2 0 1 0 0 0 2 1 4 0 0 1 1 0 0 20 1 2174.0029 Q9UQ35;I3L4D8;I3L1I8;I3L182;A0A087X1W1;I3L1C0 Q9UQ35 137 156 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 6.8882E-09 74.12 By MS/MS By matching 2 2 0.97826 1.0135 4.4921 4 Median 0.95605 1.0306 1.1423 2 0 Median 1.0553 0.97088 4.8536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25604000 12667000 12937000 24855000 12256000 12599000 749260 411160 338110 0 0 0 0 0 0 0 0 0 0 0 0 173 4359 176 590;591;592;593 637;638 637 2 AAFITYLQAK GRDQEDVVSQTESLKAAFITYLQAKQAAGI TESLKAAFITYLQAKQAAGIINVPNPGSNQ K A A A K Q 3 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1124.623 Q96T58 Q96T58 3597 3606 SPEN Msx2-interacting protein yes yes 2 0.0061601 64.265 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 0.80693 0.78841 27.796 6 Median 0.68284 0.66731 NaN 1 0 Median 0.64033 0.59301 NaN 1 0 Median 0.9944 1.0648 NaN 1 1 Median 1.029 0.93148 NaN 1 0 Median 0.95358 1.0002 NaN 1 0 Median 0.66894 0.5716 NaN 1 0 Median 17062000 8832700 8229300 2523500 1464300 1059200 1249600 580830 668780 8447700 4042700 4405100 106430 51504 54923 4549100 2582600 1966500 185680 110790 74889 174 3741 177 594;595;596;597;598;599 639;640 639 2 AAFLNFFR PLSSEPPAAKASAVRAAFLNFFRDRHGHRL AKASAVRAAFLNFFRDRHGHRLVPSASVRP R A A F R D 2 1 1 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 8 0 984.51814 Q5JTZ9 Q5JTZ9 44 51 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.054712 33.738 By MS/MS By matching By matching 2 2 1 1.0711 1.0717 57.392 5 Median 1.0232 1.0154 7.6288 2 0 Median 2.5976 2.3219 70.859 2 0 Median 0.99489 1.0333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2969400 1320000 1649400 1767300 928350 838950 891130 271760 619370 310980 119930 191050 0 0 0 0 0 0 0 0 0 175 3054 178 600;601;602;603;604 641;642 641 2 AAFQLGSPWR EGDKEDVDKAVKAARAAFQLGSPWRRMDAS VKAARAAFQLGSPWRRMDASHRGRLLNRLA R A A W R R 2 1 0 0 0 1 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 10 0 1131.5825 P05091;F8VP50 P05091 85 94 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00038325 79.906 By MS/MS By matching 2 1 0.92347 0.88438 41.209 3 Median 0.80292 0.77878 17.982 2 0 Median 1.7686 1.5356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12394000 6093500 6300700 10838000 5532800 5305400 1555900 560630 995310 0 0 0 0 0 0 0 0 0 0 0 0 176 1860 179 605;606;607 643;644 644 2 AAFQYGIK EEYSEYMNNKEALPKAAFQYGIKMSEGRKT NKEALPKAAFQYGIKMSEGRKTRRFKETND K A A I K M 2 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 896.4756 Q13123 Q13123 502 509 IK Protein Red yes yes 2 0.051676 51.456 By MS/MS 1 1.3604 1.4051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3604 1.4051 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7268000 2831100 4436800 0 0 0 0 0 0 7268000 2831100 4436800 0 0 0 0 0 0 0 0 0 177 2787 180 608 645 645 1 AAFSKDESKEPIVEVR KAGPGAKGKDMEEGKAAFSKDESKEPIVEV AFSKDESKEPIVEVRTEEERTPNHDGGKHT K A A V R T 2 1 0 1 0 0 3 0 0 1 0 2 0 1 1 2 0 0 0 2 0 0 16 2 1803.9367 A0A0D9SF98;A0A087WWJ5;A0A087WTF6;A0A087WX77;A0A087WWD4;A0A087WV75;P13591;A0A0D9SF30 A0A0D9SF98 276 291 NCAM1 Neural cell adhesion molecule 1 yes no 4 0.0079105 25.054 By MS/MS 1 0.73156 0.83153 NaN 1 Median 0.73156 0.83153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2678600 1569300 1109300 2678600 1569300 1109300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 178 17 181 609 646 646 1 AAFTAFEEAQLPR VAEEAADRHPERRMRAAFTAFEEAQLPRLK MRAAFTAFEEAQLPRLKQENPNMRLSQLKQ R A A P R L 4 1 0 0 0 1 2 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 13 0 1449.7252 Q96CT7 Q96CT7 171 183 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 4.1866E-05 137.98 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 3 1 1 0.89842 0.82631 25.837 7 Median 0.99453 0.93127 NaN 1 0 Median 0.89842 0.76266 NaN 1 0 Median 0.85246 0.8301 39.942 3 1 Median 0.97134 0.81015 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94262 0.82631 NaN 1 0 Median 42672000 22941000 19731000 13968000 6762700 7205500 916450 525880 390570 23427000 13455000 9972000 3891200 1929400 1961800 0 0 0 468820 267270 201550 179 3621 182 610;611;612;613;614;615;616 647;648;649;650;651;652;653;654 649 8 AAFVLPEFAR VAQMQLKYYNSDVHRAAFVLPEFARKALND SDVHRAAFVLPEFARKALNDVS________ R A A A R K 3 1 0 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1119.6077 P19623;K7EL89 P19623 286 295 SRM Spermidine synthase yes no 2 0.013464 40.002 By MS/MS By matching By matching 1 1 1 1.1262 1.0989 30.808 3 Plateau 1.1262 1.0989 NaN 1 0 Median 0.95674 0.80687 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70458 0.59343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1565600 681470 884180 1245300 524240 721030 190660 99473 91189 0 0 0 129720 57757 71967 0 0 0 0 0 0 180 2068 183 617;618;619 655;656 655 2 AAFYHQPWAQEAVGR KIITDVIGNPEEERRAAFYHQPWAQEAVGR AAFYHQPWAQEAVGRHIFAKVQQRRQELEQ R A A G R H 4 1 0 0 0 2 1 1 1 0 0 0 0 1 1 0 0 1 1 1 0 0 15 0 1729.8325 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 420 434 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 3 0.0001039 50.155 By MS/MS By MS/MS By matching 1 2 1 0.88479 0.80336 15.944 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75565 0.74416 NaN 1 0 Median 1.0793 0.91474 7.5358 2 0 Median 0.67048 0.67362 NaN 1 0 Median NaN NaN NaN 0 0 Median 62320000 33914000 28406000 0 0 0 0 0 0 49670000 27368000 22302000 6580200 3078900 3501200 6070000 3467500 2602500 0 0 0 181 655 184 620;621;622;623 657;658;659;660;661;662 657 6 AAGAAIAGQASLPVLPGVDR NGIAGSMQPEEEAARAAGAAIAGQASLPVL IAGQASLPVLPGVDRLPMVAGPLSPQLLTS R A A D R L 6 1 0 1 0 1 0 3 0 1 2 0 0 0 2 1 0 0 0 2 0 0 20 0 1833.0108 Q9HBE1 Q9HBE1 215 234 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes yes 2 6.0531E-07 56.122 By MS/MS 1 0.43428 0.45832 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43428 0.45832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1564500 1057500 507050 0 0 0 0 0 0 1564500 1057500 507050 0 0 0 0 0 0 0 0 0 182 4017 185 624 663 663 1 AAGALLNGPPQFSTAPEIK VNPPSSPTPSFSDAKAAGALLNGPPQFSTA LLNGPPQFSTAPEIKAPEPLSSLKSMAERA K A A I K A 4 0 1 0 0 1 1 2 0 1 2 1 0 1 3 1 1 0 0 0 0 0 19 0 1880.9996 H7C3F5;A0A2H2FJL5;B7Z6J7;O75175;A0A2R8Y4W0;H0Y5X7 H7C3F5 336 354 CNOT3 CCR4-NOT transcription complex subunit 3 yes no 2 0.0027522 28.806 By MS/MS By matching 1 1 0.68287 0.64119 36.309 2 Median 0.4957 0.496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94072 0.82888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1971800 1334100 637650 1857800 1267400 590330 0 0 0 0 0 0 113990 66665 47328 0 0 0 0 0 0 183 354 186 625;626 664 664 1 AAGARPLTSPESLSR GPQLLLSEAVSRAAKAAGARPLTSPESLSR AAGARPLTSPESLSRDLEAPEVQESYRQQL K A A S R D 3 2 0 0 0 0 1 1 0 0 2 0 0 0 2 3 1 0 0 0 0 0 15 1 1511.8056 P46379;A0A0G2JK23;A0A024RCR6 P46379 1073 1087 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3 0.00010543 52.823 By MS/MS By MS/MS 1 1 0.96268 0.99632 18.44 2 Median 0.78713 0.87452 NaN 1 0 Median 1.1774 1.1351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984700 2680700 2304100 3485700 2023700 1462000 1499000 656960 842050 0 0 0 0 0 0 0 0 0 0 0 0 184 8 187 627;628 665;666;667 666 3 AAGASDVVLYK TSEKEIISKEQGNVKAAGASDVVLYKIDVP GNVKAAGASDVVLYKIDVPANRYDLLCLEG K A A Y K I 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 2 0 0 11 0 1092.5815 Q9NSD9 Q9NSD9 54 64 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.00013837 87.308 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.9218 0.86862 12.831 4 Median 0.78375 0.73981 NaN 1 0 Median 1.0842 0.91959 NaN 1 0 Median 0.77292 0.82047 NaN 1 0 Median 1.1554 0.99082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20328000 10930000 9397300 9471100 5410200 4060900 5131900 2396800 2735100 4571100 2590700 1980400 1153700 532770 620930 0 0 0 0 0 0 185 4102 188 629;630;631;632 668;669;670;671;672 668 5 AAGCDFTNVVK EEAKQALKNMGEILKAAGCDFTNVVKTTVL EILKAAGCDFTNVVKTTVLLADINDFNTVN K A A V K T 2 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 11 0 1180.5547 P52758;H0YBX3;H0YB34 P52758 68 78 HRSP12 Ribonuclease UK114 yes no 2 0.00088993 85.731 By MS/MS 2 1.557 1.2826 1.0845 2 Median NaN NaN NaN 0 0 Median 1.557 1.2826 1.0845 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18205000 6973700 11232000 0 0 0 18205000 6973700 11232000 0 0 0 0 0 0 0 0 0 0 0 0 186 2458 189 633;634 673;674 674 2 AAGFKDPLLASGTDGVGTK CKVDLGGFAGLFDLKAAGFKDPLLASGTDG KDPLLASGTDGVGTKLKIAQLCNKHDTIGQ K A A T K L 3 0 0 2 0 0 0 4 0 0 2 2 0 1 1 1 2 0 0 1 0 0 19 1 1803.9367 P22102 P22102 481 499 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2;3 2.1276E-12 103.83 By MS/MS 3 0.97271 1.0183 2.6945 3 Median 0.97271 1.0183 2.6945 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47263000 25278000 21985000 47263000 25278000 21985000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 187 2098 190 635;636;637 675;676;677 675 3 AAGFSSSTTSTSWEGNR LTLEDVKQELIKLVKAAGFSSSTTSTSWEG GFSSSTTSTSWEGNRASQTLSFQEIALLKA K A A N R A 2 1 1 0 0 0 1 2 0 0 0 0 0 1 0 5 3 1 0 0 0 0 17 0 1744.7653 A0A087WYN9;Q7Z478 A0A087WYN9 1187 1203 DHX29 ATP-dependent RNA helicase DHX29 yes no 2 0.014244 41.401 By MS/MS 1 1.0844 1.0807 NaN 1 Median 1.0844 1.0807 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2319000 985270 1333800 2319000 985270 1333800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 188 84 191 638 678 678 1 AAGGDHGSPDSYR ______________________________ ______________________________ M A A Y R S 2 1 0 2 0 0 0 3 1 0 0 0 0 0 1 2 0 0 1 0 0 0 13 0 1288.5432 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;B4DEP1;A0A096LP72;A0A096LNY4;A0A1W2PRX2 A0A1B0GWJ0 2 14 ADSL Adenylosuccinate lyase yes no 2 0.0003556 76.143 By MS/MS 1 1.0802 0.92647 NaN 1 Median NaN NaN NaN 0 0 Median 1.0802 0.92647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631000 1276700 1354300 0 0 0 2631000 1276700 1354300 0 0 0 0 0 0 0 0 0 0 0 0 189 200 192 639 679;680 680 2 AAGGFTHDELLK AVRKLRKYIVARTQRAAGGFTHDELLKVWK TQRAAGGFTHDELLKVWKGLFYCMWMQDKP R A A L K V 2 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1257.6354 P56182 P56182 43 54 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 3 0.0012099 43.502 By matching By matching By MS/MS By matching 2 2 2 1 1.1825 1.1399 19.221 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94072 0.95343 19.98 2 0 Median 1.2588 1.1093 30.783 2 0 Median 1.2505 1.2781 1.7325 2 0 Median 1.3726 1.1399 NaN 1 0 Median 24970000 11334000 13636000 0 0 0 0 0 0 5048400 2453500 2594900 3156800 1111600 2045200 14116000 6678900 7436700 2649100 1090000 1559100 190 2507 193 640;641;642;643;644;645;646 681;682 682 2 AAGIDEQENWHEGKENIR HQDFPSVVLVGLGKKAAGIDEQENWHEGKE IDEQENWHEGKENIRAAVAAGCRQIQDLEL K A A I R A 2 1 2 1 0 1 4 2 1 2 0 1 0 0 0 0 0 1 0 0 0 0 18 1 2094.9719 P28838 P28838 105 122 LAP3 Cytosol aminopeptidase yes yes 3;4 1.1012E-05 50.053 By MS/MS By MS/MS 2 2 1.1154 1.0656 9.2447 4 Median 1.1389 1.137 1.1383 2 0 Median 1.0677 0.97541 4.4816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17554000 7325400 10229000 11825000 4944300 6880900 5729000 2381100 3347900 0 0 0 0 0 0 0 0 0 0 0 0 191 2167 194 647;648;649;650 683;684;685;686;687 685 5 AAGIGKDFKENPNLR SDDMFAAYFDSARLRAAGIGKDFKENPNLR AAGIGKDFKENPNLRDNWTDAEGYYRVNIG R A A L R D 2 1 2 1 0 0 1 2 0 1 1 2 0 1 1 0 0 0 0 0 0 0 15 2 1628.8635 H0YDJ3;Q13523 H0YDJ3 231 245 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 3 0.00030731 44.601 By MS/MS 1 0.87145 0.993 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87145 0.993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2227600 1266600 960960 0 0 0 0 0 0 2227600 1266600 960960 0 0 0 0 0 0 0 0 0 192 1176 195 651 688 688 1 AAGLATMISTMRPDIDNMDEYVR YARVEGREIISNLAKAAGLATMISTMRPDI STMRPDIDNMDEYVRNTTARAFAVVASALG K A A V R N 3 2 1 3 0 0 1 1 0 2 1 0 3 0 1 1 2 0 1 1 0 0 23 1 2569.1975 O75533 O75533 603 625 SF3B1 Splicing factor 3B subunit 1 yes yes 3 1.0844E-11 56.055 By MS/MS 2 0.83963 1.0212 1.3399 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83963 1.0212 1.3399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13505000 6656700 6848600 0 0 0 0 0 0 13505000 6656700 6848600 0 0 0 0 0 0 0 0 0 193 1683 196;197 652;653 689;690;691 689 540;541 3 AAGLQAEIGQVK ELSSKEAQWEELKKKAAGLQAEIGQVKQEL KKKAAGLQAEIGQVKQELSRKDTELLALQT K A A V K Q 3 0 0 0 0 2 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1183.6561 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 461 472 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00024813 84.213 By MS/MS 1 1.8065 1.554 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8065 1.554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3800100 1564800 2235400 0 0 0 0 0 0 0 0 0 3800100 1564800 2235400 0 0 0 0 0 0 194 3311 198 654 692;693 692 2 AAGPGLGNVAMGPR SGQGPNGGMGDPYSRAAGPGLGNVAMGPRQ RAAGPGLGNVAMGPRQHYPYGGPYDRVRTE R A A P R Q 3 1 1 0 0 0 0 4 0 0 1 0 1 0 2 0 0 0 0 1 0 0 14 0 1266.6503 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;H0YCU6 O14497 1263 1276 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 2.6023E-05 98.249 By MS/MS By MS/MS 2 2 0.81159 0.77193 4.7746 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71918 0.78727 7.9376 2 1 Median 0.89179 0.77193 1.2292 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37419000 19862000 17557000 0 0 0 0 0 0 30872000 16267000 14605000 6546600 3594500 2952100 0 0 0 0 0 0 195 1480 199;200 655;656;657;658 694;695;696;697;698 696 476 5 AAGQTVVAQPVHMQQLLK MNVAGISVAIGQPQKAAGQTVVAQPVHMQQ QTVVAQPVHMQQLLKLKQQAVQQQKAIQPQ K A A L K L 3 0 0 0 0 4 0 1 1 0 2 1 1 0 1 0 1 0 0 3 0 0 18 0 1918.0459 Q96L91;A0A0A0MR70 Q96L91 2951 2968 EP400 E1A-binding protein p400 yes no 2;3 0.00033169 39.917 By MS/MS 3 0.8397 0.89449 27.373 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8397 0.89449 27.373 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42217000 22898000 19319000 0 0 0 0 0 0 42217000 22898000 19319000 0 0 0 0 0 0 0 0 0 196 3700 201 659;660;661 699;700;701 701 3 AAGSGELGVTMK GVRIRETTDFKVDTKAAGSGELGVTMKGPK DTKAAGSGELGVTMKGPKGLEELVKQKDFL K A A M K G 2 0 0 0 0 0 1 3 0 0 1 1 1 0 0 1 1 0 0 1 0 0 12 0 1119.5594 O75369;E7EN95 O75369 481 492 FLNB Filamin-B yes no 2 3.1534E-06 110.38 By MS/MS By MS/MS By matching 4 3 1 1.1618 1.0302 19.17 8 Plateau 1.2383 1.1079 18.343 4 0 Linear 1.1562 1.0371 14.052 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76279 0.71054 NaN 1 0 Median 126920000 59924000 66995000 30134000 13756000 16377000 95973000 45788000 50184000 0 0 0 0 0 0 0 0 0 812100 378770 433330 197 1664 202;203 662;663;664;665;666;667;668;669 702;703;704;705;706 703 528 4 AAGTAAALAFLSQESR ______________________________ AGTAAALAFLSQESRTRAGGVGGLRVPAPV M A A S R T 6 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 16 0 1562.8053 O75607 O75607 2 17 NPM3 Nucleoplasmin-3 yes yes 2 4.9232E-11 167.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 2 4 1 1.1869 1.0997 8.6959 16 Median 1.1087 1.0939 5.0544 3 0 Median 1.289 1.0559 3.9647 2 0 Median 1.158 1.1394 7.2817 4 0 Median 1.2818 1.0438 8.1129 2 0 Median 1.1836 1.2264 7.3937 4 0 Median 1.3457 1.0547 NaN 1 0 Median 64734000 29906000 34828000 22526000 10422000 12104000 4063100 1729800 2333400 22740000 10568000 12172000 7446600 3089500 4357200 6614400 3583400 3031000 1343700 513280 830410 198 1686 204 670;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685 707;708;709;710;711;712;713;714;715;716;717 714 11 AAGTLYTYPENWR ______________________________ ______________________________ M A A W R A 2 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 2 1 2 0 0 0 13 0 1540.731 P26641 P26641 2 14 EEF1G Elongation factor 1-gamma yes yes 2 2.9419E-53 230.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 3 7 6 5 3 1.0721 0.96073 19.2 31 Median 1.0159 0.95344 8.4182 7 0 Median 0.99431 0.80422 8.7819 3 0 Median 1.1106 1.1547 14.487 7 1 Median 1.074 0.88831 7.3901 6 0 Median 1.1815 1.2323 13.08 5 0 Median 1.0443 0.81363 6.8638 3 0 Median 866860000 403570000 463290000 171820000 82535000 89282000 14747000 7954900 6792300 318760000 141580000 177180000 290360000 137220000 153140000 38489000 17131000 21358000 32681000 17149000 15532000 199 2149 205 686;687;688;689;690;691;692;693;694;695;696;697;698;699;700;701;702;703;704;705;706;707;708;709;710;711;712;713;714;715;716 718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754;755;756;757;758;759;760;761;762;763;764;765;766;767 757 50 AAGTSSYWEDLRK ______________________________ ______________________________ M A A R K Q 2 1 0 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 1 0 0 0 13 1 1482.7103 K7EJC8;E9PCW1;O95249;B4DQA8;F6RU00 K7EJC8 2 14 GOSR1 Golgi SNAP receptor complex member 1 yes no 2 1.2676E-05 94.616 By MS/MS By MS/MS By matching 1 1 1 1.1583 1.1112 8.252 3 Median 1.0658 1.1112 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1873 1.2347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1583 1.0493 NaN 1 0 Median 28479000 11542000 16937000 21262000 8983900 12278000 0 0 0 6922100 2431300 4490900 0 0 0 0 0 0 294890 126490 168410 200 913 206 717;718;719 768;769;770 768 3 AAGVEAAAEVAATEIK ______________________________ AGVEAAAEVAATEIKMEEESGAPGVPSGNG M A A I K M 7 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 16 0 1499.7831 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 2 17 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 3.7945E-14 172.11 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 4 1 3 1.1691 1.0185 27.86 19 Median 1.4443 1.3594 45.81 4 0 Median 1.0373 0.91961 12.397 3 0 Plateau 0.8242 0.81633 29.857 4 1 Median 1.2604 1.0808 8.7385 4 0 Linear 0.78731 0.79279 NaN 1 0 Median 1.408 1.1635 6.849 3 0 Plateau 193450000 101170000 92279000 10403000 4114300 6288600 1749100 794560 954570 92273000 48407000 43867000 5586700 2469800 3116900 80218000 44046000 36172000 3216200 1336100 1880000 201 116 207 720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738 771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787 779 17 AAGVNVEPFWPGLFAK DEVTVTEDKINALIKAAGVNVEPFWPGLFA AGVNVEPFWPGLFAKALANVNIGSLICNVG K A A A K A 3 0 1 0 0 0 1 2 0 0 1 1 0 2 2 0 0 1 0 2 0 0 16 0 1701.8879 P05386 P05386 34 49 RPLP1 60S acidic ribosomal protein P1 yes yes 2 4.013E-05 81.017 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 2 1 2 4 0.88118 0.80576 11.502 14 Median 0.85034 0.80465 12.586 5 0 Median 0.88118 0.74125 2.0163 2 0 Median 0.83895 0.796 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8806 0.90707 2.5238 2 0 Median 1.0197 0.83175 13.518 4 0 Median 83417000 43286000 40131000 21889000 11695000 10194000 14049000 7055500 6993100 35615000 18575000 17040000 0 0 0 2032800 1086700 946120 9832000 4874900 4957100 202 1863 208 739;740;741;742;743;744;745;746;747;748;749;750;751;752 788;789;790;791;792;793;794;795;796;797;798;799;800;801;802;803 802 16 AAGVVLEMIR RQASQGMVGQLAARRAAGVVLEMIREGKIA LAARRAAGVVLEMIREGKIAGRAVLIAGQP R A A I R E 2 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 2 0 0 10 0 1057.5954 Q9Y230;M0R0Y3;X6R2L4;M0QXI6 Q9Y230 55 64 RUVBL2 RuvB-like 2 yes no 2 0.00038325 114.28 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 1 1 1.0899 1.0464 4.9814 9 Median 1.0422 0.99656 3.8295 2 0 Median 1.2594 1.0771 NaN 1 0 Median 1.0337 1.0413 7.1646 2 0 Median 1.2348 1.0673 2.7901 2 0 Median 1.0899 1.0925 NaN 1 0 Median 1.1992 0.97751 NaN 1 0 Median 104680000 50321000 54359000 47077000 23029000 24049000 3032800 1293600 1739200 43929000 21356000 22573000 5592700 2443800 3148900 4606100 1977000 2629100 441670 221260 220410 203 4368 209;210 753;754;755;756;757;758;759;760;761;762 804;805;806;807;808;809;810;811;812;813 806 1947 10 AAGYNFYGTER SEENSALEYFGEMLKAAGYNFYGTERLYSG EMLKAAGYNFYGTERLYSGISGLELEADIF K A A E R L 2 1 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 2 0 0 0 11 0 1247.5571 Q9H9Y6 Q9H9Y6 968 978 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.042268 27.115 By MS/MS By matching By matching 1 1 1 1.0842 0.99465 6.4763 3 Median NaN NaN NaN 0 0 Median 1.2161 1.0509 NaN 1 0 Median 0.92767 0.99465 NaN 1 0 Median 1.0842 0.92362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5851500 2810000 3041600 0 0 0 1479400 778380 701070 2677300 1307400 1369900 1694800 724230 970590 0 0 0 0 0 0 204 4004 211 763;764;765 814 814 1 AAHGGSAASSALK ______________________________ ______________________________ M A A L K G 5 0 0 0 0 0 0 2 1 0 1 1 0 0 0 3 0 0 0 0 0 0 13 0 1126.5731 O94888;F8WB69 O94888 2 14 UBXN7 UBX domain-containing protein 7 yes no 2 9.7973E-07 132.88 By MS/MS By MS/MS By matching 1 1 1 0.84916 0.84975 15.093 3 Median 0.78473 0.74899 NaN 1 0 Median 1.198 1.0116 NaN 1 0 Median 0.84916 0.84975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12608000 5902600 6704900 5880400 2888800 2991600 6387900 2853500 3534400 339230 160360 178870 0 0 0 0 0 0 0 0 0 205 1733 212 766;767;768 815;816;817 817 3 AAHLCAEAALR AQGTQVTGRKADVIKAAHLCAEAALRLVKP DVIKAAHLCAEAALRLVKPGNQNTQVTEAW K A A L R L 5 1 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1181.5975 Q9UQ80;F8VR77;H0YIN7;F8W0A3 Q9UQ80 145 155 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00014272 85.731 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1.0995 0.9667 8.2779 7 Median 1.1721 1.1169 NaN 1 0 Median 1.1276 0.9667 4.6676 3 0 Plateau 0.9911 0.99856 NaN 1 0 Median 1.0705 0.92134 8.4185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34279000 15148000 19132000 12971000 5922500 7048700 13133000 5723900 7409300 2854000 1470300 1383700 5320800 2030800 3290000 0 0 0 0 0 0 206 4360 213 769;770;771;772;773;774;775 818;819;820;821;822;823;824;825;826;827 824 9 AAHSEGNTTAGLDMR DNAGYDSADLVAQLRAAHSEGNTTAGLDMR AAHSEGNTTAGLDMREGTIGDMAILGITES R A A M R E 3 1 1 1 0 0 1 2 1 0 1 0 1 0 0 1 2 0 0 0 0 0 15 0 1529.6893 P78371 P78371 467 481 CCT2 T-complex protein 1 subunit beta yes yes 2;3 8.6054E-07 96.229 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 1 3 1.1269 0.99213 25.436 16 Median 1.1704 1.1062 11.391 4 0 Median 1.0917 0.94476 15.165 5 0 Median 1.1435 1.1914 NaN 1 0 Median 1.0307 0.89295 7.4286 2 0 Median 2.3288 2.3382 NaN 1 0 Median 1.1258 0.98526 6.1033 3 0 Median 115940000 51527000 64413000 53319000 24195000 29123000 43798000 20089000 23709000 3579100 1561800 2017300 2609500 1229200 1380200 7274700 1911700 5363100 5360000 2540000 2820000 207 2644 214 776;777;778;779;780;781;782;783;784;785;786;787;788;789;790;791 828;829;830;831;832;833;834;835;836;837;838;839;840;841;842;843;844;845;846;847 830 20 AAIAQALAGEVSVVPPSR PREAYPDGSSKEKRRAAIAQALAGEVSVVP AQALAGEVSVVPPSRLMALLGQALKWQQHQ R A A S R L 5 1 0 0 0 1 1 1 0 1 1 0 0 0 2 2 0 0 0 3 0 0 18 0 1734.9628 Q2TAY7 Q2TAY7 143 160 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2;3 3.4003E-11 104.87 By matching By matching By MS/MS By matching By matching By matching 2 4 4 3 4 1 0.76913 0.73752 16.2 18 Median 0.63555 0.62323 16.9 2 0 Median 0.81592 0.71001 8.8812 4 0 Median 0.75248 0.7827 15.939 4 0 Median 1.0886 0.9485 17.215 3 0 Median 0.65541 0.65546 5.7728 4 0 Median 0.94187 0.76954 NaN 1 0 Median 46697000 25628000 21068000 6703900 4095100 2608800 11736000 6382600 5353200 18054000 9788500 8265500 2815100 1401500 1413600 6988800 3802000 3186800 399220 158750 240460 208 3005 215 792;793;794;795;796;797;798;799;800;801;802;803;804;805;806;807;808;809 848;849;850;851;852 852 5 AAIAQLNGK KDYAFVHMEKEADAKAAIAQLNGKEVKGKR KEADAKAAIAQLNGKEVKGKRINVELSTKG K A A G K E 3 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 884.50797 Q96PK6 Q96PK6 127 135 RBM14 RNA-binding protein 14 yes yes 2 0.00049905 108.24 By MS/MS 1 0.68875 0.71223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68875 0.71223 NaN 1 1 Median NaN NaN NaN 0 0 Median 4112300 2218400 1893900 0 0 0 0 0 0 0 0 0 0 0 0 4112300 2218400 1893900 0 0 0 209 3712 216 810 853 853 1 AAIASIPVGSFEAGASGRPGPAPR PKAQRPSPKAPQKVKAAIASIPVGSFEAGA SFEAGASGRPGPAPRQPLEPGPVREPTAPE K A A P R Q 6 2 0 0 0 0 1 4 0 2 0 0 0 1 4 3 0 0 0 1 0 0 24 1 2235.176 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 2089 2112 CIC Protein capicua homolog yes no 3 0.00020568 41.521 By MS/MS 1 0.5088 0.55917 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5088 0.55917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4808100 3239200 1568900 0 0 0 0 0 0 4808100 3239200 1568900 0 0 0 0 0 0 0 0 0 210 1283 217 811 854 854 1 AAIDWFDGK KGEATVSFDDPPSAKAAIDWFDGKEFSGNP DPPSAKAAIDWFDGKEFSGNPIKVSFATRR K A A G K E 2 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1021.4869 H3BPE7;P35637;Q92804;A0A075B7D9 H3BPE7 350 358 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 2 0.0025104 71.501 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 5 10 6 4 1.1435 1.0077 14.29 28 Median 0.83763 0.79688 9.4138 2 0 Median 1.1125 0.98166 NaN 1 0 Median 1.1523 1.1058 19.532 5 0 Median 1.2197 1.0304 8.5364 10 0 Median 0.90499 0.89565 12.98 6 0 Median 1.2402 1.0207 5.342 4 0 Median 151470000 72459000 79006000 7671200 4086200 3585100 622130 291730 330400 104540000 49819000 54718000 22965000 10472000 12493000 14688000 7337500 7350600 982450 452860 529590 211 1221;3559 218 812;813;814;815;816;817;818;819;820;821;822;823;824;825;826;827;828;829;830;831;832;833;834;835;836;837;838;839 855;856;857;858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876 861 22 AAIDWFDGKEFHGNIIK KGEATVSFDDPPSAKAAIDWFDGKEFHGNI IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K A A I K V 2 0 1 2 0 0 1 2 1 3 0 2 0 2 0 0 0 1 0 0 0 0 17 1 1959.9843 Q92804;A0A075B7D9 Q92804 298 314 TAF15 TATA-binding protein-associated factor 2N yes no 3 1.0092E-05 52.453 By matching By matching By MS/MS By matching By MS/MS By matching 2 1 1 2 7 5 1.0965 1.1141 14.753 18 Median 0.91179 0.90298 23.934 2 0 Median 1.2108 1.1504 NaN 1 0 Median 1.0663 1.185 NaN 1 0 Median 1.2124 1.1354 11.618 2 0 Median 0.96991 1.0461 6.6905 7 0 Median 1.3516 1.2046 13.723 5 0 Median 83603000 41249000 42353000 5224600 2388500 2836100 256010 93189 162830 14167000 6723600 7443700 965740 463950 501790 61324000 30920000 30404000 1664900 660060 1004900 212 3559 219 840;841;842;843;844;845;846;847;848;849;850;851;852;853;854;855;856;857 877;878;879;880 877 4 AAIDWFDGKEFSGNPIK KGEATVSFDDPPSAKAAIDWFDGKEFSGNP IDWFDGKEFSGNPIKVSFATRRADFNRGGG K A A I K V 2 0 1 2 0 0 1 2 0 2 0 2 0 2 1 1 0 1 0 0 0 0 17 1 1893.9261 H3BPE7;P35637 H3BPE7 350 366 FUS RNA-binding protein FUS yes no 2;3 0.0001109 72.958 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 3 7 4 12 3 0.90072 0.92856 23.167 34 Median 0.95735 0.89657 35.531 5 0 Median 1.0147 0.95724 34.056 3 0 Median 0.8949 0.91163 27.12 7 0 Median 1.0693 0.99978 9.2109 4 0 Median 0.8134 0.88521 16.01 12 0 Median 1.097 1.0038 5.982 3 0 Median 234040000 123410000 110630000 29373000 15862000 13511000 1203900 532840 671050 128080000 67140000 60944000 12681000 6076400 6604600 62079000 33544000 28536000 616660 256150 360520 213 1221 220 858;859;860;861;862;863;864;865;866;867;868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884;885;886;887;888;889;890;891 881;882;883;884;885;886;887;888;889;890;891;892 887 12 AAIEAFNK AYLSGMLRFEHQEWKAAIEAFNKCKTIYEK FEHQEWKAAIEAFNKCKTIYEKLASAFTEE K A A N K C 3 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 862.45487 Q9UHB9 Q9UHB9 206 213 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.059985 48.346 By MS/MS 1 1.0727 0.91067 NaN 1 Median NaN NaN NaN 0 0 Median 1.0727 0.91067 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4922900 2288800 2634100 0 0 0 4922900 2288800 2634100 0 0 0 0 0 0 0 0 0 0 0 0 214 4274 221 892 893 893 1 AAIISAEGDSK ERARFVVEKAEQQKKAAIISAEGDSKAAEL QQKKAAIISAEGDSKAAELIANSLATAGDG K A A S K A 3 0 0 1 0 0 1 1 0 2 0 1 0 0 0 2 0 0 0 0 0 0 11 0 1060.5401 P35232;C9JW96 P35232 209 219 PHB Prohibitin yes no 2 0.00011287 126.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 2 1.3404 1.1175 20.87 11 Median 0.96541 0.89666 3.0429 2 0 Median 1.3993 1.1713 6.6461 2 0 Median 0.88058 0.82537 NaN 1 0 Median 1.4824 1.2644 19.206 3 0 Median 1.6299 1.6614 NaN 1 0 Median 1.3408 1.1272 3.654 2 0 Median 91770000 42003000 49768000 39889000 19456000 20433000 30487000 12738000 17749000 13994000 6977900 7015800 2875100 1001500 1873600 2007500 775940 1231600 2518000 1053700 1464300 215 2233 222 893;894;895;896;897;898;899;900;901;902;903 894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909 895 16 AAILDLEK KNSKSEFEKENQKGKAAILDLEKTCKELKH KENQKGKAAILDLEKTCKELKHQLQVQMEN K A A E K T 2 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 871.50148 Q15075 Q15075 885 892 EEA1 Early endosome antigen 1 yes yes 2 0.012861 54.157 By MS/MS 1 1.0473 0.92612 NaN 1 Median NaN NaN NaN 0 0 Median 1.0473 0.92612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131600 1095200 1036400 0 0 0 2131600 1095200 1036400 0 0 0 0 0 0 0 0 0 0 0 0 216 2926 223 904 910 910 1 AAILETAPK AVSSVVNSIQVLTSKAAILETAPKEVPMVV QVLTSKAAILETAPKEVPMVVVPPVGAKGN K A A P K E 3 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 9 0 912.52803 Q9P2E9;A2A2S5 Q9P2E9 167 175 RRBP1 Ribosome-binding protein 1 yes no 2 0.045126 32.32 By matching By matching By MS/MS 1 2 2 1.1758 1.0313 29.684 5 Median 0.87669 0.89276 NaN 1 0 Median 0.86462 0.75348 44.386 2 0 Median NaN NaN NaN 0 0 Median 1.3134 1.1101 6.9292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6427900 3218100 3209700 2862900 1615000 1247900 2178000 1024500 1153600 0 0 0 1386900 578690 808240 0 0 0 0 0 0 217 4222 224 905;906;907;908;909 911 911 1 AAILGFTSPVWAVR RLGENIIPYVADGAKAAILGFTSPVWAVRN KAAILGFTSPVWAVRNSSTLLFSALITRIF K A A V R N 3 1 0 0 0 0 0 1 0 1 1 0 0 1 1 1 1 1 0 2 0 0 14 0 1486.8296 Q6YHU6;H0Y3V5 Q6YHU6 1237 1250 THADA Thyroid adenoma-associated protein yes no 2 0.019404 44.765 By MS/MS 1 0.92175 0.9261 NaN 1 Median 0.92175 0.9261 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1428600 816280 612310 1428600 816280 612310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 218 3194 225 910 912 912 1 AAILPTSIFLTNK PSNHVIDRWLGEPIKAAILPTSIFLTNKKG IKAAILPTSIFLTNKKGFPVLSKMHQRLIF K A A N K K 2 0 1 0 0 0 0 0 0 2 2 1 0 1 1 1 2 0 0 0 0 0 13 0 1387.8075 O14744;H0YJX6 O14744 228 240 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0038536 42.743 By MS/MS By matching By matching By matching 2 1 1 1 1.027 0.89994 9.3657 5 Median 1.049 1.025 5.1524 2 0 Median 1.0407 0.89686 NaN 1 0 Median 0.8429 0.89994 NaN 1 0 Median 0.95005 0.83665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10002000 5029700 4972600 5892700 3046800 2846000 2697600 1287000 1410600 1321000 649880 671150 90912 45976 44936 0 0 0 0 0 0 219 1492 226 911;912;913;914;915 913;914;915;916 914 4 AAILPTSIFLTNKK PSNHVIDRWLGEPIKAAILPTSIFLTNKKG KAAILPTSIFLTNKKGFPVLSKMHQRLIFR K A A K K G 2 0 1 0 0 0 0 0 0 2 2 2 0 1 1 1 2 0 0 0 0 0 14 1 1515.9025 O14744;H0YJX6 O14744 228 241 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 3 0.041766 13.746 By MS/MS By matching By matching 1 1 1 1.1687 1.1071 27.044 3 Plateau 1.1687 1.1071 NaN 1 0 Median 0.88825 0.83645 NaN 1 0 Median 0.55664 0.64467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5353000 2782100 2570900 3509400 1745200 1764200 977420 499110 478310 866150 537770 328380 0 0 0 0 0 0 0 0 0 220 1492 227 916;917;918 917 917 1 AAILQQTAEYIFSLEQEK LKTLIPHTDGEKLSKAAILQQTAEYIFSLE LQQTAEYIFSLEQEKTRLLQQNTQLKRFIQ K A A E K T 3 0 0 0 0 3 3 0 0 2 2 1 0 1 0 1 1 0 1 0 0 0 18 0 2081.0681 Q01664;I3L254 Q01664 86 103 TFAP4 Transcription factor AP-4 yes no 3 0.0016985 26.808 By MS/MS 1 0.82996 0.92223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82996 0.92223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2133100 1107100 1026000 0 0 0 0 0 0 2133100 1107100 1026000 0 0 0 0 0 0 0 0 0 221 2690 228 919 918;919 919 2 AAIPPPVYEEQDRPR FPYEEDSRPRSQSSKAAIPPPVYEEQDRPR AAIPPPVYEEQDRPRSPTGPSNSFLANMGG K A A P R S 2 2 0 1 0 1 2 0 0 1 0 0 0 0 4 0 0 0 1 1 0 0 15 1 1736.8846 Q96I25;Q5W010;H0Y6J6;Q5W012 Q96I25 207 221 RBM17 Splicing factor 45 yes no 3 0.00011353 61.409 By MS/MS 1 0.52886 0.5726 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52886 0.5726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11403000 7006600 4396800 0 0 0 0 0 0 11403000 7006600 4396800 0 0 0 0 0 0 0 0 0 222 3674 229 920 920 920 1 AAIQSQLDGVR RREARKKASVEARLKAAIQSQLDGVRTGLS ARLKAAIQSQLDGVRTGLSQLHNALNDVKD K A A V R T 2 1 0 1 0 2 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1156.62 O60645;D6RB59;D6RBR9 O60645 49 59 EXOC3 Exocyst complex component 3 yes no 2 0.00015601 82.287 By MS/MS By MS/MS 1 1 1.0621 1.0005 2.5341 2 Median NaN NaN NaN 0 0 Median 1.1321 0.98273 NaN 1 0 Median 0.99639 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10415000 5222700 5192000 0 0 0 2363700 1051100 1312700 8051000 4171600 3879400 0 0 0 0 0 0 0 0 0 223 1623 230 921;922 921;922;923;924 921 4 AAISSGIEDPVPTLHLTER KAPEPLSSLKSMAERAAISSGIEDPVPTLH SGIEDPVPTLHLTERDIILSSTSAPPASAQ R A A E R D 2 1 0 1 0 0 2 1 1 2 2 0 0 0 2 2 2 0 0 1 0 0 19 0 2005.048 H7C3F5;A0A2H2FJL5;B7Z6J7;O75175;A0A2R8Y4W0;H0Y5X7;A0A2R8Y691 H7C3F5 369 387 CNOT3 CCR4-NOT transcription complex subunit 3 yes no 3 0.0050798 24.594 By MS/MS By matching 1 1 0.40519 0.39231 48.851 2 Median 0.57039 0.55417 NaN 1 0 Median 0.28783 0.27772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3966300 2229800 1736500 3348500 1987300 1361200 617840 242520 375320 0 0 0 0 0 0 0 0 0 0 0 0 224 354 231 923;924 925 925 1 AAIYGGVEGGGTR ______________________________ ______________________________ M A A T R S 2 1 0 0 0 0 1 5 0 1 0 0 0 0 0 0 1 0 1 1 0 0 13 0 1206.5993 H7C3G9;Q9UJ70;H7C1L7 H7C3G9 2 14 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.00040608 70.1 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 225 1265 232 925;926 926;927 927 2 AAKLEILQQQLQVANEAR RDAALKQLEALEKEKAAKLEILQQQLQVAN LEILQQQLQVANEARDSAQTSVTQAQREKA K A A A R D 4 1 1 0 0 4 2 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 18 1 2022.1222 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 614 631 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 4.9788E-12 107.75 By MS/MS By MS/MS 1 1 0.99029 1.1563 3.5414 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98905 1.1857 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99153 1.1277 NaN 1 0 Median NaN NaN NaN 0 0 Median 27003000 14131000 12872000 0 0 0 0 0 0 9847000 4928400 4918600 0 0 0 17156000 9202600 7953400 0 0 0 226 2905;77 233 927;928 928;929;930;931 930 4 AALAATLEEYK SHHMERIIESEQKGKAALAATLEEYKATVA QKGKAALAATLEEYKATVASDQIEMNRLKA K A A Y K A 4 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 11 0 1178.6183 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 575 585 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 2 0.018998 35.445 By MS/MS 2 0.99408 0.83667 10.008 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99408 0.83667 10.008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1957700 955830 1001900 0 0 0 0 0 0 0 0 0 1957700 955830 1001900 0 0 0 0 0 0 227 469 234 929;930 932 932 1 AALADVLR ESRVQQQEDEITVLKAALADVLRRLAISED DEITVLKAALADVLRRLAISEDHVASVKKS K A A L R R 3 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 827.4865 Q9HC35;B5MBZ0 Q9HC35 43 50 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 0.061313 47.849 By MS/MS 2 0.49783 0.40695 127.06 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49783 0.40695 127.06 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13543000 12252000 1291500 0 0 0 0 0 0 0 0 0 13543000 12252000 1291500 0 0 0 0 0 0 228 4024 235 931;932 933;934 933 2 AALAEEQTEVAVK ______________________________ ______________________________ M A A V K L 4 0 0 0 0 1 3 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1357.7089 Q15542 Q15542 2 14 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 2 0.0014798 53.683 By MS/MS 1 1.0122 1.1177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0122 1.1177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4600600 1846700 2753900 0 0 0 0 0 0 4600600 1846700 2753900 0 0 0 0 0 0 0 0 0 229 2957 236 933 935 935 1 AALAHPFFQDVTKPVPHLR SQMLHYDPNKRISAKAALAHPFFQDVTKPV HPFFQDVTKPVPHLRL______________ K A A L R L 3 1 0 1 0 1 0 0 2 0 2 1 0 2 3 0 1 0 0 2 0 0 19 1 2143.1691 G3V5T9;P24941;E7ESI2 G3V5T9 327 345 CDK2 Cyclin-dependent kinase 2 yes no 4;5 0.019132 17.296 By MS/MS By matching By matching By matching 2 1 1 1 0.67415 0.67648 15.21 5 Median 0.70414 0.70379 5.5978 2 0 Median 0.67357 0.6288 NaN 1 0 Median 0.71755 0.78243 NaN 1 0 Median 0.55925 0.52777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18190000 10678000 7511200 14315000 8207800 6107200 387570 222650 164920 2991000 1981600 1009400 496100 266450 229640 0 0 0 0 0 0 230 1120 237 934;935;936;937;938 936;937;938 937 3 AALAHSEEVTASQVAATK QRLREQLQLLEEQHRAALAHSEEVTASQVA AHSEEVTASQVAATKTLPNGRDALDGPAAE R A A T K T 6 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 2 0 0 2 0 0 18 0 1782.9112 Q15149;H0YDN1 Q15149 2744 2761 PLEC Plectin yes no 2;3 2.5386E-167 304.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 2 3 1.1904 1.1849 11.628 13 Median 1.1793 1.1849 4.5468 3 0 Median 1.359 1.2113 6.9927 3 0 Median 1.1248 1.1975 5.1438 2 0 Median 1.4001 1.4084 NaN 1 0 Median 1.0985 1.1515 NaN 1 0 Median 1.3086 1.1188 14.87 3 0 Median 517720000 224160000 293560000 124220000 57627000 66593000 182320000 76501000 105820000 88784000 40956000 47828000 18618000 7422700 11195000 45864000 18138000 27726000 57913000 23518000 34396000 231 2933 238 939;940;941;942;943;944;945;946;947;948;949;950;951;952 939;940;941;942;943;944;945;946;947;948;949;950;951;952;953;954;955;956;957;958;959;960;961;962;963;964 955 26 AALAPLPPLPAQFK ______________________________ MAALAPLPPLPAQFKSIQHHLRTAQEHDKR M A A F K S 4 0 0 0 0 1 0 0 0 0 3 1 0 1 4 0 0 0 0 0 0 0 14 0 1432.8442 Q9NP79;A0A087WY55 Q9NP79 2 15 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 2 0.00072826 63.159 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.66116 0.56449 18.534 6 Median NaN NaN NaN 0 0 Median 0.61907 0.52123 NaN 1 0 Median 0.50631 0.49794 9.0405 2 0 Median NaN NaN NaN 0 0 Median 0.74175 0.72843 4.0116 2 0 Median 0.73282 0.60032 NaN 1 0 Median 35077000 20322000 14755000 0 0 0 2840200 1639200 1201000 5383800 3408100 1975800 0 0 0 26632000 15145000 11487000 220900 129830 91066 232 76 239 953;954;955;956;957;958 965;966;967;968;969 969 5 AALDEAQGVGLDSTGYYDQEIYGGSDSR HEDIEAQIREIQGKKAALDEAQGVGLDSTG TGYYDQEIYGGSDSRFAGYVTSIAATELED K A A S R F 3 1 0 4 0 2 2 5 0 1 2 0 0 0 0 3 1 0 3 1 0 0 28 0 2936.2948 O75533;B4DGZ4;A0A494C1M2 O75533 23 50 SF3B1 Splicing factor 3B subunit 1 yes no 3 5.4451E-14 54.744 By MS/MS 1 1.0202 1.1219 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0202 1.1219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8458700 4098200 4360500 0 0 0 0 0 0 8458700 4098200 4360500 0 0 0 0 0 0 0 0 0 233 1683 240 959 970;971 971 2 AALDSGAFQSVWVSTDHDEIENVAK IKHLAGVPLIGWVLRAALDSGAFQSVWVST VWVSTDHDEIENVAKQFGAQVHRRSSEVSK R A A A K Q 4 0 1 3 0 1 2 1 1 1 1 1 0 1 0 3 1 1 0 3 0 0 25 0 2688.2667 Q8NFW8 Q8NFW8 78 102 CMAS N-acylneuraminate cytidylyltransferase yes yes 3 4.2077E-17 63.573 By MS/MS By matching 2 1 1.3137 1.1751 31.213 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1516 1.1911 44.128 2 0 Median 1.3137 1.1751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43860000 20505000 23355000 0 0 0 0 0 0 40004000 19014000 20990000 3855600 1491300 2364300 0 0 0 0 0 0 234 3441 241 960;961;962 972;973 973 2 AALEAAAAAAPER ______________________________ RRAALEAAAAAAPERGGGSCVLCCGDLEAT R A A E R G 8 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1210.6306 Q86UK7 Q86UK7 12 24 ZNF598 Zinc finger protein 598 yes yes 2 0.010322 53.569 By MS/MS 1 2.0274 1.9633 NaN 1 Median 2.0274 1.9633 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3706800 1177000 2529800 3706800 1177000 2529800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 235 3278 242 963 974 974 1 AALEALGSCLNNK CRGLELIASENFCSRAALEALGSCLNNKYS SRAALEALGSCLNNKYSEGYPGKRYYGGAE R A A N K Y 3 0 2 0 1 0 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1359.6816 P34897;G3V5L0;G3V4W5;G3V540;G3V241;G3V3Y8;G3V4T0;G3V4X0;G3V2W0;G3V2E4 P34897 83 95 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 2 5.1394E-09 103.26 By MS/MS 2 0.88502 0.8256 NaN 1 Median 0.88502 0.8256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8902800 5591400 3311400 8902800 5591400 3311400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 236 2228 243 964;965 975;976 976 2 AALEALLPYTER RREAPEELLAYEGVRAALEALLPYTERHFQ GVRAALEALLPYTERHFQRLSRTLQAAAFL R A A E R H 3 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 0 0 0 12 0 1345.7242 Q12788;J3KNP2 Q12788 755 766 TBL3 Transducin beta-like protein 3 yes no 2 3.4285E-06 152.97 By matching By MS/MS By matching By MS/MS 2 3 1 1 1.0169 1.0705 8.5505 7 Median NaN NaN NaN 0 0 Median 1.2212 1.0705 2.8571 2 0 Median 1.0144 1.0705 6.7268 3 0 Median 1.4246 1.2275 NaN 1 0 Median 0.91109 0.95541 NaN 1 0 Median NaN NaN NaN 0 0 Median 28297000 13402000 14895000 0 0 0 2237800 1046900 1191000 21828000 10388000 11439000 1961400 775970 1185400 2270300 1191100 1079200 0 0 0 237 2757 244 966;967;968;969;970;971;972 977;978;979;980;981;982;983;984;985;986 978 10 AALEAQNALHNIK PQSKGCCFVTFYTRKAALEAQNALHNIKTL RKAALEAQNALHNIKTLPGMHHPIQMKPAD K A A I K T 4 0 2 0 0 1 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1391.7521 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9 E9PC62 102 114 CELF2 CUGBP Elav-like family member 2 yes no 2;3 4.7243E-05 89.029 By MS/MS By MS/MS 3 2 0.76356 0.7861 31.749 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73551 0.74681 4.7978 3 0 Median 1.5442 1.325 8.4328 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15400000 7840400 7559900 0 0 0 0 0 0 8058000 4852900 3205100 7342300 2987500 4354800 0 0 0 0 0 0 238 294 245 973;974;975;976;977 987;988;989;990;991 989 5 AALEAQNALHNMK PQSKGCCFVTFYTRKAALEAQNALHNMKVL RKAALEAQNALHNMKVLPGMHHPIQMKPAD K A A M K V 4 0 2 0 0 1 1 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 13 0 1409.7085 G5EA30;Q92879;E9PSH0;E9PQK4;E9PKU1 G5EA30 98 110 CELF1 CUGBP Elav-like family member 1 yes no 2;3 6.6763E-10 171.36 By matching By MS/MS By MS/MS 1 5 2 1.0379 0.95384 26.98 8 Median 0.55114 0.59334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0268 1.0051 26.206 5 0 Median 1.0591 0.90743 1.3362 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92060000 45858000 46202000 1930100 1077700 852370 0 0 0 47568000 24650000 22918000 42562000 20130000 22431000 0 0 0 0 0 0 239 1133 246 978;979;980;981;982;983;984;985 992;993;994;995;996;997;998;999;1000;1001;1002;1003 1002 12 AALEDTLAETEAR LQGLEIELQSQLSMKAALEDTLAETEARFG MKAALEDTLAETEARFGAQLAHIQALISGI K A A A R F 4 1 0 1 0 0 3 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 13 0 1388.6783 CON__P08727;P08727;K7EMS3 CON__P08727 318 330 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 4.7281E-16 192.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 2 3 0.99063 0.9736 31.277 12 Median 0.97261 0.9736 3.2814 2 2 Median 1.2557 1.0956 NaN 1 0 Median 0.90334 1.0015 41.573 3 0 Median 1.0774 0.88924 NaN 1 0 Median 0.56245 0.5607 39.974 2 1 Median 1.2921 1.036 11.739 3 0 Median 675680000 344350000 331330000 57887000 28549000 29338000 10378000 4516800 5861500 456960000 228580000 228380000 27702000 12086000 15616000 88565000 54933000 33632000 34188000 15683000 18504000 + 240 752 247 986;987;988;989;990;991;992;993;994;995;996;997 1004;1005;1006;1007;1008;1009;1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022 1009 19 AALEEFSR LASVVDPRVASAAAKAALEEFSRVREEVPL VASAAAKAALEEFSRVREEVPLELVEAHVK K A A S R V 2 1 0 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 921.4556 Q92922 Q92922 717 724 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.00081148 97.798 By MS/MS 1 0.95719 1.0524 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95719 1.0524 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13218000 7118700 6099700 0 0 0 0 0 0 13218000 7118700 6099700 0 0 0 0 0 0 0 0 0 241 3567 248 998 1023 1023 1 AALEELVK ______________________________ ______________________________ R A A V K L 2 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 871.50148 P12081;B4DDD8;B4E1C5;E7ETE2;D6RF05;A0A2R8YCI2 P12081 5 12 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0052175 77.058 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1262 1.023 4.0413 4 Median 1.0674 0.98979 NaN 1 1 Median 1.1605 0.98704 NaN 1 0 Median 1.093 1.0625 NaN 1 0 Median 1.2334 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39700000 18099000 21602000 11997000 5432300 6564900 5571100 2481900 3089100 10949000 5130000 5818900 11183000 5054400 6128900 0 0 0 0 0 0 242 1975 249 999;1000;1001;1002 1024;1025;1026;1027 1025 4 AALEEVEGDVAELELK TVDFEECLKDSPRFRAALEEVEGDVAELEL ALEEVEGDVAELELKLDKLVKLCIAMIDTG R A A L K L 3 0 0 1 0 0 5 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 16 0 1713.8673 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 19 34 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 yes no 2 4.9096E-08 135.6 By MS/MS 1 0.96785 0.84572 NaN 1 Median NaN NaN NaN 0 0 Median 0.96785 0.84572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6134900 2582200 3552700 0 0 0 6134900 2582200 3552700 0 0 0 0 0 0 0 0 0 0 0 0 243 120 250 1003 1028;1029 1028 2 AALEEVER QKSLAAEEEAARQRKAALEEVERLKAKVEE EAARQRKAALEEVERLKAKVEEARRLRERA K A A E R L 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 915.46616 Q15149 Q15149 2143 2150 PLEC Plectin yes yes 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1835 1.0231 6.772 4 Median NaN NaN NaN 0 0 Median 1.2096 0.98478 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2211 1.0628 NaN 1 0 Median 1.0738 1.1122 NaN 1 0 Median 1.1579 0.96051 NaN 1 0 Median 23126000 10267000 12859000 0 0 0 9656700 3913500 5743100 0 0 0 1498000 678170 819860 7374100 3649100 3725100 4597200 2025900 2571300 244 2933 251 1004;1005;1006;1007;1008 1030;1031;1032;1033;1034;1035;1036;1037 1031 8 AALEEVYPDLTPEETR QGVALLPFVDERRLRAALEEVYPDLTPEET ALEEVYPDLTPEETRRNSLGGDVLFVGKHH R A A T R R 2 1 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 16 0 1831.884 Q9H0D6 Q9H0D6 660 675 XRN2 5-3 exoribonuclease 2 yes yes 2 0.00013156 51.774 By MS/MS 1 0.48479 0.51834 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48479 0.51834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2269900 1543200 726690 0 0 0 0 0 0 2269900 1543200 726690 0 0 0 0 0 0 0 0 0 245 3924 252 1009 1038 1038 1 AALEEVYPDLTPEETRR QGVALLPFVDERRLRAALEEVYPDLTPEET LEEVYPDLTPEETRRNSLGGDVLFVGKHHP R A A R R N 2 2 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 17 1 1987.9851 Q9H0D6 Q9H0D6 660 676 XRN2 5-3 exoribonuclease 2 yes yes 3 3.3097E-06 79.652 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 0.75916 0.7511 21.237 7 Median 0.76961 0.85506 NaN 1 0 Median 0.64999 0.64352 21.863 2 0 Median 0.62541 0.72265 NaN 1 0 Median 1.0557 1.0019 5.1642 2 0 Median 0.66087 0.71805 NaN 1 0 Median NaN NaN NaN 0 0 Median 40581000 23070000 17511000 6236200 3430200 2806000 2478300 1230900 1247400 21107000 12498000 8609400 1537500 709780 827770 9221700 5201200 4020500 0 0 0 246 3924 253 1010;1011;1012;1013;1014;1015;1016 1039;1040;1041;1042;1043 1040 5 AALEEWLPR LRWTKKATKSPEETRAALEEWLPRELWHEI SPEETRAALEEWLPRELWHEINGLLVGFGQ R A A P R E 2 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 9 0 1083.5713 A0A494BZZ6;P78549;A0A494C106;H3BPD5 A0A494BZZ6 160 168 NTHL1 Endonuclease III-like protein 1 yes no 2 0.00089599 91.906 By matching By MS/MS By matching 1 1 1 0.89009 0.77397 28.949 3 Median NaN NaN NaN 0 0 Median 1.4027 1.2122 NaN 1 0 Median 0.71272 0.7055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89009 0.77397 NaN 1 0 Median 5583400 2636700 2946700 0 0 0 264150 98459 165690 4696400 2297400 2399000 0 0 0 0 0 0 622860 240770 382090 247 454 254 1017;1018;1019 1044;1045 1044 2 AALEGTATYR YAKEADYVAQATRLRAALEGTATYRGDIYF ATRLRAALEGTATYRGDIYFCTGYDPPMKP R A A Y R G 3 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 1 0 0 0 10 0 1051.5298 Q9NRV9;A0A3B3IRV5 Q9NRV9 153 162 HEBP1 Heme-binding protein 1 yes no 2 2.0661E-05 146.81 By MS/MS By MS/MS 1 2 1.2765 1.0795 21.301 3 Median 0.97152 0.92204 NaN 1 0 Median 1.468 1.2318 18.664 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22592000 10523000 12069000 14813000 7025600 7787200 7779500 3497700 4281800 0 0 0 0 0 0 0 0 0 0 0 0 248 4088 255 1020;1021;1022 1046;1047;1048;1049 1046 4 AALEQLLK DHPYIQYNVLWEEGKAALEQLLKFMVHPAI VLWEEGKAALEQLLKFMVHPAISSINLTTA K A A L K F 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 884.53312 Q92797;A0A087WUE9;M0R3C7 Q92797 234 241 SYMPK Symplekin yes no 2 0.0040847 83.614 By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 1 0.98463 1.0015 15.734 7 Median NaN NaN NaN 0 0 Median 1.1163 0.98095 5.3525 2 0 Median 0.96086 1.0273 NaN 1 0 Median 1.113 0.97455 12.574 2 0 Median 0.96881 1.0015 NaN 1 0 Median 0.77713 0.67284 NaN 1 0 Median 13506000 6478500 7027100 0 0 0 1558600 697150 861420 9115600 4445100 4670500 1966000 877230 1088800 629020 307560 321460 236390 151470 84917 249 3558 256 1023;1024;1025;1026;1027;1028;1029 1050;1051;1052 1051 3 AALFLQTLK KESKEKQLQAERKRKAALFLQTLKNPLPEA AERKRKAALFLQTLKNPLPEAEAGKIEESP K A A L K N 2 0 0 0 0 1 0 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1003.6066 Q12872;H0YFR9 Q12872 687 695 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 2 0.0061228 55.531 By MS/MS By matching By matching By matching 1 1 3 1 0.92586 0.95278 26.919 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0521 1.1385 NaN 1 0 Median 1.1632 0.99366 NaN 1 0 Median 0.81478 0.91359 25.665 3 0 Median 0.71761 0.60686 NaN 1 0 Median 15597000 8134300 7463200 0 0 0 0 0 0 5383500 2585900 2797600 344330 147480 196850 9796900 5371200 4425700 72761 29673 43087 250 2765 257 1030;1031;1032;1033;1034;1035 1053;1054 1054 2 AALFNTR ECGGNLFDAISIAVKAALFNTRIPRVRVLE DAISIAVKAALFNTRIPRVRVLEDEEGSKD K A A T R I 2 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 791.42899 Q15024 Q15024 158 164 EXOSC7 Exosome complex component RRP42 yes yes 2 0.040883 57.281 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1693700 0 1693700 0 0 0 0 0 0 0 0 0 1693700 0 1693700 0 0 0 0 0 0 251 2916 258 1036 1055 1055 1 AALGEPVRLER ______________________________ ______________________________ M A A E R D 2 2 0 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 11 1 1209.683 Q9NUP9;G3V1D4 Q9NUP9 2 12 LIN7C Protein lin-7 homolog C yes no 2 7.4752E-05 81.594 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.98398 0.87852 10.062 5 Median 0.76551 0.81828 NaN 1 0 Median 1.0344 0.87852 NaN 1 0 Median 0.8948 0.92777 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98649 1.0699 NaN 1 0 Median 0.98398 0.87654 NaN 1 0 Median 143340000 76555000 66781000 60526000 35163000 25363000 9057300 4210000 4847300 63726000 32354000 31372000 0 0 0 8968700 4370500 4598100 1057700 457270 600410 252 4117 259 1037;1038;1039;1040;1041 1056;1057;1058;1059;1060;1061 1056 6 AALGPLVTGLYDVQAFK ______________________________ LGPLVTGLYDVQAFKFGDFVLKSGLSSPIY R A A F K F 3 0 0 1 0 1 0 2 0 0 3 1 0 1 1 0 1 0 1 2 0 0 17 0 1761.9665 P11172;E9PFD2;F2Z3P2;F2Z303;F8WDG4 P11172 6 22 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 2.3433E-05 74.76 By MS/MS By MS/MS By matching 1 1 1 1.023 0.97776 19.602 3 Median 1.023 0.97776 NaN 1 0 Median 1.1517 0.98582 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79809 0.69919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5893600 2936600 2957000 3190100 1602700 1587300 2659500 1310500 1349000 0 0 0 44049 23332 20717 0 0 0 0 0 0 253 1953 260 1042;1043;1044 1062;1063;1064;1065 1064 4 AALGPSSQNVTEYVVR ______________________________ ALGPSSQNVTEYVVRVPKNTTKKYNIMAFN M A A V R V 2 1 1 0 0 1 1 1 0 0 1 0 0 0 1 2 1 0 1 3 0 0 16 0 1689.8686 P35269;M0R0Z3 P35269 2 17 GTF2F1 General transcription factor IIF subunit 1 yes no 2 2.1531E-10 117.98 By MS/MS By matching By MS/MS 1 1 2 0.99808 0.98066 22.511 4 Median 0.85126 0.82757 NaN 1 0 Median 1.2112 1.3784 NaN 1 0 Median 0.99808 0.98066 12.088 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20460000 10450000 10010000 5061700 2579500 2482100 1542600 740440 802130 13856000 7130100 6725500 0 0 0 0 0 0 0 0 0 254 2240 261 1045;1046;1047;1048 1066;1067;1068;1069;1070 1070 5 AALGSPSHTFR ______________________________ ______________________________ M A A F R G 2 1 0 0 0 0 0 1 1 0 1 0 0 1 1 2 1 0 0 0 0 0 11 0 1142.5833 A0A0A6YYJ8;Q96HJ9 A0A0A6YYJ8 2 12 LUC7L2;C7orf55 UPF0562 protein C7orf55 no no 2 2.1696E-07 168.8 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2421 1.1112 14.888 4 Median 1.0076 0.97434 NaN 1 0 Median 1.5974 1.3654 NaN 1 0 Median 1.0271 1.0424 NaN 1 0 Median 1.5021 1.1844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129050000 56906000 72147000 59272000 29052000 30220000 63219000 24764000 38455000 5290200 2513500 2776700 1272600 577390 695190 0 0 0 0 0 0 255 206;3667 262 1049;1050;1051;1052 1071;1072;1073;1074;1075;1076;1077;1078 1076 8 AALLDQALSNAR LQARYSEIQDRCCRKAALLDQALSNARLFG CRKAALLDQALSNARLFGEDEVEVLNWLAE K A A A R L 4 1 1 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1241.6728 H3BPE1;H3BQK9;A0A590UJG2 H3BPE1 5549 5560 MACF1 yes no 2 4.8065E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.96653 0.89156 4.9179 5 Median 0.89532 0.87043 NaN 1 0 Median 1.168 0.96076 NaN 1 0 Median 0.84394 0.89156 NaN 1 0 Median 0.96653 0.84022 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0646 0.89314 NaN 1 0 Median 41370000 19939000 21430000 22482000 10838000 11643000 8049200 3592600 4456600 9413100 4764100 4649000 647920 356240 291680 0 0 0 777910 387940 389980 256 1220 263 1053;1054;1055;1056;1057 1079;1080;1081;1082;1083;1084;1085;1086 1081 8 AALLELWELRR SDEVREKLTVLSEERAALLELWELRRQQYE SEERAALLELWELRRQQYEQCMDLQLFYRD R A A R R Q 2 2 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 11 1 1368.7878 A0A0D9SF54;Q13813 Q13813 450 460 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.0016453 78.113 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 1 1.1494 1.2776 24.267 11 Median 1.3703 1.4892 39.871 3 0 Median 1.1986 1.1661 12.912 2 0 Median 1.0363 1.3092 26.532 3 0 Plateau NaN NaN NaN 0 0 Median 1.2952 1.4042 7.8583 2 0 Median 1.1494 1.039 NaN 1 0 Median 34081000 15415000 18666000 7044400 2611500 4432800 12529000 5622800 6906200 12424000 6328200 6095300 0 0 0 1876000 764340 1111700 208040 88318 119720 257 264;2838 264 1058;1059;1060;1061;1062;1063;1064;1065;1066;1067;1068 1087;1088;1089;1090;1091;1092;1093;1094;1095;1096;1097;1098;1099 1094 12 AALLNQHYQVNFK FPPEASGYLHIGHAKAALLNQHYQVNFKGK AKAALLNQHYQVNFKGKLIMRFDDTNPEKE K A A F K G 2 0 2 0 0 2 0 0 1 0 2 1 0 1 0 0 0 0 1 1 0 0 13 0 1544.81 P07814;V9GYZ6 P07814 217 229 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 1.0264E-05 135.71 By MS/MS By MS/MS By MS/MS 2 3 2 1.1981 1.1189 4.3235 7 Median 1.1863 1.1291 1.2814 2 0 Median 1.2792 1.1341 3.6968 3 0 Median NaN NaN NaN 0 0 Median 1.1618 1.0521 4.7411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 191370000 87569000 103800000 160520000 74160000 86364000 28929000 12517000 16412000 0 0 0 1917400 892740 1024600 0 0 0 0 0 0 258 1892 265 1069;1070;1071;1072;1073;1074;1075 1100;1101;1102;1103;1104;1105;1106;1107;1108 1100 9 AALMESQGQQQEER EREAEQMGNELERLRAALMESQGQQQEERG RAALMESQGQQQEERGQQEREVARLTQERG R A A E R G 2 1 0 0 0 4 3 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 14 0 1603.726 A0A087WY61;Q14980 Q14980 986 999 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.6806E-23 198.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 1.066 0.98157 7.3847 9 Median NaN NaN NaN 0 0 Median 1.1225 0.96324 2.6662 2 0 Median 0.90573 0.98725 NaN 1 0 Median 1.1011 0.96405 3.1404 2 0 Median 0.95842 1.0028 12.861 3 0 Median 1.066 0.88411 NaN 1 0 Median 83419000 43106000 40313000 0 0 0 4842800 2377700 2465100 27737000 14298000 13439000 2685700 1258300 1427400 43385000 22688000 20697000 4768300 2484100 2284200 259 2905;77 266;267 1076;1077;1078;1079;1080;1081;1082;1083;1084 1109;1110;1111;1112;1113;1114;1115;1116;1117;1118;1119;1120 1111 28 12 AALMESQGQQQEERGQQER EREAEQMGNELERLRAALMESQGQQQEERG ESQGQQQEERGQQEREVARLTQERGRAQAD R A A E R E 2 2 0 0 0 6 4 2 0 0 1 0 1 0 0 1 0 0 0 0 0 0 19 1 2202.0084 A0A087WY61;Q14980 Q14980 986 1004 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.00039891 34.721 By MS/MS By MS/MS 1 1 0.96193 1.1245 14.425 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98574 1.2452 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93868 1.0154 NaN 1 0 Median NaN NaN NaN 0 0 Median 9436900 5104700 4332200 0 0 0 0 0 0 2505500 1295600 1209900 0 0 0 6931400 3809100 3122300 0 0 0 260 2905;77 268 1085;1086 1121;1122;1123;1124 1123 4 AALNALQPPEFR ______________________________ PDKAALNALQPPEFRNESSLASTLKTLLFF K A A F R N 3 1 1 0 0 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 12 0 1325.7092 Q3ZAQ7 Q3ZAQ7 7 18 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 yes yes 2;3 7.3986E-22 200.6 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0205 0.8573 25.789 6 Median 0.73862 0.71734 19.168 2 0 Median 1.0205 0.84729 11.113 2 0 Median 1.0856 1.3714 NaN 1 0 Median 1.1201 0.89471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150580000 77624000 72954000 115650000 60861000 54790000 25682000 12220000 13462000 9063400 4457100 4606300 182550 86576 95970 0 0 0 0 0 0 261 3015 269 1087;1088;1089;1090;1091;1092 1125;1126;1127;1128;1129;1130;1131;1132;1133;1134;1135;1136;1137 1135 13 AALNELLK LCALGLAMQDATLSKAALNELLKHIKHKDS QDATLSKAALNELLKHIKHKDSNYQRCLLT K A A L K H 2 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 870.51747 Q6PGP7 Q6PGP7 1143 1150 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.011309 57.177 By MS/MS By MS/MS By matching By matching 1 3 3 2 0.9409 0.94007 10.957 9 Median 0.9371 0.90225 NaN 1 0 Median 1.3781 1.1456 18.804 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93818 0.90271 3.3502 3 0 Median 1.2294 1.0237 4.9231 2 0 Median 49907000 24262000 25645000 3842000 1776100 2065900 2936400 1280900 1655500 0 0 0 0 0 0 41475000 20148000 21327000 1653100 1056200 596890 262 3169 270 1093;1094;1095;1096;1097;1098;1099;1100;1101 1138;1139 1138 2 AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR TEEQVSWLSKEWAKRAALPSHVVTMLDNFP SAAVTALNSESNFARAYAQGISRTKYWELI R A A A R A 6 1 4 1 0 1 1 0 2 0 5 0 2 2 3 5 3 0 0 3 0 0 39 0 4151.0568 O75390;B4DJV2;A0A0C4DGI3;H0YH82;F8VPA1;F8W1S4;F8VPF9;F8VR34;F8VRI6;F8VX68;F8VRP1 O75390 145 183 CS Citrate synthase, mitochondrial;Citrate synthase yes no 4 7.9731E-25 72.959 By MS/MS 2 0.83472 0.71182 1.2333 2 Median NaN NaN NaN 0 0 Median 0.83472 0.71182 1.2333 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8958500 4550400 4408000 0 0 0 8958500 4550400 4408000 0 0 0 0 0 0 0 0 0 0 0 0 263 594 271 1102;1103 1140;1141;1142 1141 3 AALQALKR QELTAAKKHGTKNKRAALQALKRKKRYEKQ HGTKNKRAALQALKRKKRYEKQLAQIDGTL R A A K R K 3 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 869.54469 Q9H444;Q96CF2 Q9H444 64 71 CHMP4B;CHMP4C Charged multivesicular body protein 4b;Charged multivesicular body protein 4c no no 2 0.019356 52.683 By MS/MS By matching By MS/MS 1 1 1 1.416 1.404 17.49 3 Median 1.416 1.404 NaN 1 0 Median 1.1333 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5125 1.4273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811200 1731500 2079700 2198300 1081600 1116700 681770 303000 378760 0 0 0 931100 346900 584200 0 0 0 0 0 0 264 3961;3618 272 1104;1105;1106 1143;1144 1144 2 AALQEELQLCK FCFTPHTEEGCLSERAALQEELQLCKGLVQ LSERAALQEELQLCKGLVQALQTKVTQQGL R A A C K G 2 0 0 0 1 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1301.6649 P49327;A0A0U1RQF0 P49327 1132 1142 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.2124E-08 140.5 By MS/MS By matching 3 1 1.294 1.1079 37.372 4 Median NaN NaN NaN 0 0 Median 1.5564 1.3792 43.437 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0758 0.8899 NaN 1 0 Median 31660000 12456000 19204000 0 0 0 26538000 9862500 16675000 0 0 0 0 0 0 0 0 0 5122200 2593500 2528700 265 2377 273 1107;1108;1109;1110 1145;1146 1145 2 AALQELLSK AVVSERLKIRGSLARAALQELLSKGLIKLV RGSLARAALQELLSKGLIKLVSKHRAQVIY R A A S K G 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 971.56515 P62851 P62851 86 94 RPS25 40S ribosomal protein S25 yes yes 2 0.0006654 106.04 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 1.1929 1.0637 11.912 12 Median 1.1577 1.104 10.531 4 0 Median 1.2012 1.0247 8.3177 3 0 Median 1.1845 1.1144 8.3715 2 0 Median 1.2988 1.0771 18.38 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 535520000 246600000 288920000 410970000 189970000 221000000 33216000 14609000 18608000 80588000 37325000 43263000 10743000 4689600 6053400 0 0 0 0 0 0 266 2600 274 1111;1112;1113;1114;1115;1116;1117;1118;1119;1120;1121;1122 1147;1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162;1163 1158 17 AALQLQLNTIK AEGENLLLKTQGSEKAALQLQLNTIKTNWD GSEKAALQLQLNTIKTNWDTFNKQVKEREN K A A I K T 2 0 1 0 0 2 0 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1211.7238 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2837 2847 DST Dystonin yes no 2 0.003854 49.06 By MS/MS By matching By matching By matching 1 1 1 1 1.1462 1.1394 4.8514 4 Median 1.051 1.0518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0446 1.1239 NaN 1 0 Median 1.25 1.1551 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3501 1.1742 NaN 1 0 Median 14536000 6690100 7845700 9102600 4084100 5018400 0 0 0 5149600 2484800 2664900 212730 89104 123620 0 0 0 70840 32056 38784 267 934 275 1123;1124;1125;1126 1164 1164 1 AALQSQAEALR NCGSSDGCEELERLRAALQSQAEALRRLLP ERLRAALQSQAEALRRLLPPAQDGFEVLGA R A A L R R 4 1 0 0 0 2 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1156.62 Q8WZA9 Q8WZA9 166 176 IRGQ Immunity-related GTPase family Q protein yes yes 2 0.0059281 65.305 By MS/MS 1 0.98889 0.85817 NaN 1 Median NaN NaN NaN 0 0 Median 0.98889 0.85817 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3090700 1733600 1357200 0 0 0 3090700 1733600 1357200 0 0 0 0 0 0 0 0 0 0 0 0 268 3526 276 1127 1165 1165 1 AALRDYETVVK YYRRAASNMALGKFRAALRDYETVVKVKPH GKFRAALRDYETVVKVKPHDKDAKMKYQEC R A A V K V 2 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 2 0 0 11 1 1263.6823 P53041;H0YDU8;A8MU39 P53041 114 124 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 2;3 0.04036 38.086 By MS/MS 2 1.2799 1.2768 56.604 2 Median 1.2799 1.2768 56.604 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16399000 7694800 8703700 16399000 7694800 8703700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 269 1177 277 1128;1129 1166;1167 1166 2 AALRPLVKPK ______________________________ ______________________________ M A A P K I 2 1 0 0 0 0 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 10 2 1091.7179 D3YTB1;F8W727;P62910;D3YTI8 D3YTB1 2 11 RPL32 60S ribosomal protein L32 yes no 2 0.044501 42.109 By matching By MS/MS By matching By matching 2 3 1 2 0.79523 0.85567 12.842 8 Median 0.7798 0.83218 0.77315 2 0 Median 0.85517 0.87502 16.908 3 0 Median NaN NaN NaN 0 0 Median 0.82221 0.6782 NaN 1 0 Median 0.78246 0.91058 1.4752 2 0 Median NaN NaN NaN 0 0 Median 17030000 9160600 7869200 5113700 2814800 2298900 10644000 5718900 4925000 0 0 0 231380 126800 104580 1040900 500200 540730 0 0 0 270 798 278 1130;1131;1132;1133;1134;1135;1136;1137 1168 1168 1 AALSALESFLK VLLKWCAHTNVELKKAALSALESFLKQVSN ELKKAALSALESFLKQVSNMVAKNAEMHKN K A A L K Q 3 0 0 0 0 0 1 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 11 0 1148.6441 P78527 P78527 311 321 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0076996 41.876 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 1 1 2 1.0058 0.99291 11.813 8 Median 0.97586 0.97966 4.7782 3 0 Median 1.3944 1.2488 NaN 1 0 Median 0.93773 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94556 0.99048 NaN 1 0 Median 1.3578 1.1139 17.1 2 0 Median 122310000 55062000 67250000 42898000 20870000 22028000 62303000 26019000 36284000 8162000 4123300 4038700 0 0 0 5856000 2977600 2878400 3092700 1072900 2019800 271 2647 279 1138;1139;1140;1141;1142;1143;1144;1145 1169;1170;1171;1172 1169 4 AALSASEGEEVPQDK RISGLGLTPEQKQKKAALSASEGEEVPQDK AALSASEGEEVPQDKAPSHVPFLLIGGGTA K A A D K A 3 0 0 1 0 1 3 1 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1529.7209 O95831 O95831 113 127 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 1.0069E-09 119.74 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1891 0.99201 21.528 5 Median 0.94165 0.8822 NaN 1 0 Median 1.1891 0.99201 NaN 1 0 Median 0.96714 1.003 32.085 2 1 Median 1.5354 1.304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53098000 23848000 29250000 14605000 7673100 6931500 24187000 10022000 14165000 8184000 3754200 4429800 6122300 2398900 3723400 0 0 0 0 0 0 272 1797 280 1146;1147;1148;1149;1150 1173;1174;1175;1176;1177;1178;1179;1180;1181 1174 9 AALSEEELEKK AVKREAALPPVSPLKAALSEEELEKKSKAI SPLKAALSEEELEKKSKAIIEEYLHLNDMK K A A K K S 2 0 0 0 0 0 4 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 11 1 1245.6452 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1072 1082 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 3.8498E-05 101.11 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 5 1.0412 0.98506 18.364 18 Median 1.0209 0.98746 10.474 5 1 Median 1.0241 0.974 17.289 6 3 Median 1.2716 1.4695 8.1474 2 0 Median 1.0851 1.0019 10.994 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72376000 34581000 37795000 23708000 11140000 12567000 21590000 10769000 10821000 15047000 6971200 8075800 12031000 5700200 6330600 0 0 0 0 0 0 273 894 281 1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168 1182;1183;1184;1185;1186;1187;1188;1189;1190;1191;1192;1193;1194;1195;1196;1197;1198;1199 1187 18 AALSEEELER ESAKPEISAMSAHDKAALSEEELERKSKSI SAHDKAALSEEELERKSKSIIDEFLHINDF K A A E R K 2 1 0 0 0 0 4 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1145.5564 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1404 1413 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.0023766 75.378 By MS/MS 2 0.87326 0.73645 NaN 1 Median NaN NaN NaN 0 0 Median 0.87326 0.73645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2230300 1232100 998230 0 0 0 2230300 1232100 998230 0 0 0 0 0 0 0 0 0 0 0 0 274 300 282 1169;1170 1200;1201 1200 2 AALSEEELERK ESAKPEISAMSAHDKAALSEEELERKSKSI AHDKAALSEEELERKSKSIIDEFLHINDFK K A A R K S 2 1 0 0 0 0 4 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1273.6514 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1404 1414 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 3 0.019664 37.426 By MS/MS 1 0.66853 0.6842 NaN 1 Median 0.66853 0.6842 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1575600 885570 690070 1575600 885570 690070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 275 300 283 1171 1202 1202 1 AALSEMVEYITHNR VSDPLSDLKWKEVKRAALSEMVEYITHNRN RAALSEMVEYITHNRNVITEPIYPEVVHMF R A A N R N 2 1 1 0 0 0 2 0 1 1 1 0 1 0 0 1 1 0 1 1 0 0 14 0 1632.793 H0YJ75;Q13362;Q96B13;G3V2U3 H0YJ75 100 113 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform yes no 3 0.00035624 49.31 By matching By MS/MS By matching By matching 1 2 1 1 1.2461 1.14 29.266 5 Median NaN NaN NaN 0 0 Median 1.3072 1.14 NaN 1 0 Median 0.97029 0.9868 33.622 2 0 Median NaN NaN NaN 0 0 Median 1.3498 1.358 NaN 1 0 Median 0.80241 0.70799 NaN 1 0 Median 5554500 2375100 3179400 0 0 0 941280 370560 570720 4112300 1769500 2342800 0 0 0 273390 97662 175720 227450 137370 90081 276 1185 284 1172;1173;1174;1175;1176 1203;1204 1203 2 AALSGANVLTLIEK MFWTNWNEQHPSIMRAALSGANVLTLIEKD RAALSGANVLTLIEKDIRTPNGLAIDHRAE R A A E K D 3 0 1 0 0 0 1 1 0 1 3 1 0 0 0 1 1 0 0 1 0 0 14 0 1398.8082 Q07954;H0YJI8 Q07954 2361 2374 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes no 2 0.00010931 82.171 By MS/MS By matching 1 1 0.57629 0.60389 23.163 2 Median 0.71304 0.71135 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46577 0.51266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7170500 4134600 3036000 6541300 3716900 2824400 0 0 0 629220 417670 211550 0 0 0 0 0 0 0 0 0 277 2733 285 1177;1178 1205;1206 1205 2 AALSGSYVNFGVFR ALKLKGISICFSMLKAALSGSYVNFGVFRL KAALSGSYVNFGVFRLYGDDALDNALQTFI K A A F R L 2 1 1 0 0 0 0 2 0 0 1 0 0 2 0 2 0 0 1 2 0 0 14 0 1486.7569 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 842 855 XPO7 Exportin-7 yes no 2 3.5493E-06 95.573 By MS/MS By matching 1 1 0.9246 0.85808 20.517 2 Median 0.76463 0.74221 NaN 1 0 Median 1.118 0.99205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4624500 1678100 2946400 3446200 1225600 2220600 1178300 452570 725780 0 0 0 0 0 0 0 0 0 0 0 0 278 885 286 1179;1180 1207;1208 1207 2 AALTAEHFAALQSLLK ______________________________ ALTAEHFAALQSLLKASSKDVVRQLCQESF M A A L K A 5 0 0 0 0 1 1 0 1 0 4 1 0 1 0 1 1 0 0 0 0 0 16 0 1682.9356 Q9P000;E9PJ95 Q9P000 2 17 COMMD9 COMM domain-containing protein 9 yes no 2 7.6702E-11 110.66 By matching By MS/MS By matching By matching 2 3 1 1 1.1828 1.0292 21.73 7 Median 1.2394 1.162 1.4147 2 0 Median 1.1828 1.0292 29.795 3 0 Median NaN NaN NaN 0 0 Median 1.1216 0.89716 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0106 0.82855 NaN 1 0 Median 11153000 4947500 6205500 9155800 4042500 5113300 1309200 574650 734560 0 0 0 84686 38242 46444 0 0 0 603280 292060 311220 279 4195 287 1181;1182;1183;1184;1185;1186;1187 1209;1210 1209 2 AALTGLLHR SGTSYKDLMPHDLARAALTGLLHRTSVPKE PHDLARAALTGLLHRTSVPKEVVDYIIFGT R A A H R T 2 1 0 0 0 0 0 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 950.56615 P55084;B5MD38;C9JEY0;C9JE81 P55084 82 90 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.00046743 109.01 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.6108 1.3832 20.594 5 Median NaN NaN NaN 0 0 Median 1.5037 1.2652 NaN 1 1 Median 1.1381 1.1063 NaN 1 1 Median 1.6108 1.3832 NaN 1 0 Median 1.7175 1.7284 NaN 1 0 Median 2.0844 1.7954 NaN 1 0 Median 108550000 45265000 63280000 0 0 0 11145000 4347000 6798400 42567000 19719000 22848000 49094000 19242000 29852000 2119000 966530 1152500 3620600 991320 2629300 280 2496 288 1188;1189;1190;1191;1192 1211;1212;1213;1214 1211 3 AALTIDEK ITKEQPLKVSKALHKAALTIDEKGTEAVGS VSKALHKAALTIDEKGTEAVGSTFLEAIPM K A A E K G 2 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 859.4651 CON__P34955 CON__P34955 358 365 yes yes 2 6.0107E-09 136.11 By MS/MS By MS/MS By MS/MS 2 3 1 0.14885 0.13806 76.319 5 Median 0.14885 0.13806 NaN 1 1 Median 0.14206 0.11972 105.29 3 3 Median 0.16488 0.16976 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95825000 83660000 12164000 47780000 43191000 4589300 45742000 38608000 7133800 2302700 1861400 441340 0 0 0 0 0 0 0 0 0 + 281 763 289 1193;1194;1195;1196;1197;1198 1215;1216;1217;1218;1219;1220 1218 6 AALTLTPSAVNK ATVRAVSKRKLQPTRAALTLTPSAVNKIKQ PTRAALTLTPSAVNKIKQLLKDKPEHVGVK R A A N K I 3 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1184.6765 Q5TBE9;Q9BUE6 Q5TBE9 23 34 ISCA1 Iron-sulfur cluster assembly 1 homolog, mitochondrial yes no 2 0.0003959 140.83 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2025 1.0547 21.363 4 Median 0.87618 0.79908 NaN 1 0 Median 1.4502 1.1938 NaN 1 0 Median 1.2619 1.2601 NaN 1 0 Median 1.1458 0.93179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23907000 10916000 12991000 7909700 4378300 3531400 12545000 4977700 7567800 1927800 846770 1081000 1524000 713200 810820 0 0 0 0 0 0 282 3101 290 1199;1200;1201;1202 1221;1222;1223 1222 3 AALTRDPQFQK ______________________________ ______________________________ M A A Q K L 2 1 0 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 11 1 1273.6779 P06744;A0A2R8Y6C7;A0A0J9YXP8;K7EPY4;K7ERC6;K7EP41;K7ENA0;A0A0J9YXM3 P06744 2 12 GPI Glucose-6-phosphate isomerase yes no 2 3.5746E-10 175.41 By MS/MS By matching 3 1 1.1102 1.1409 21.574 4 Linear 1.1119 1.1124 17.227 3 0 Plateau 0.78227 0.67672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54603000 24999000 29605000 54291000 24823000 29467000 312680 175310 137370 0 0 0 0 0 0 0 0 0 0 0 0 283 1875 291 1203;1204;1205;1206 1224 1224 1 AALVAQNYINYQQGTPHR ______________________________ VAQNYINYQQGTPHRVFEVQKVKQASMEDI R A A H R V 3 1 2 0 0 3 0 1 1 1 1 0 0 0 1 0 1 0 2 1 0 0 18 0 2043.0286 Q9BS40 Q9BS40 13 30 LXN Latexin yes yes 3 1.0902E-14 137.19 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.81402 0.77492 14.338 5 Median 0.72455 0.68401 17.648 2 0 Median 1.0037 0.84883 NaN 1 0 Median 0.77621 0.74421 NaN 1 0 Median 1.0468 0.86327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118410000 64260000 54152000 103180000 56526000 46656000 9020300 4355500 4664800 5449400 3028200 2421200 759810 349950 409870 0 0 0 0 0 0 284 3810 292 1207;1208;1209;1210;1211 1225;1226;1227;1228;1229;1230;1231 1226 7 AALVDLEPGTMDSVR NVYYNESSSQKYVPRAALVDLEPGTMDSVR AALVDLEPGTMDSVRSGPFGQLFRPDNFIF R A A V R S 2 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1572.7818 Q9BUF5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 63 77 TUBB6 Tubulin beta-6 chain yes no 2 0.00029145 68.551 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 0.94425 0.85644 30.735 6 Median 0.88786 0.84914 NaN 1 0 Median 0.78472 0.67557 34.758 2 0 Median 0.80659 0.80953 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3444 1.3559 NaN 1 0 Median 1.1588 1.0053 NaN 1 0 Median 19133000 9698300 9434200 10786000 5613800 5172400 2450200 1234600 1215600 4228400 2045300 2183100 0 0 0 1460200 710070 750100 207520 94462 113060 285 3838 293 1212;1213;1214;1215;1216;1217 1232;1233;1234;1235 1234 4 AALVDYLDGK PALKGLGECHLMMAKAALVDYLDGKAVDYI LMMAKAALVDYLDGKAVDYIEKALEYFTCA K A A G K A 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 0 1063.555 Q6PGP7 Q6PGP7 682 691 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.0026987 59.35 By MS/MS 1 0.29901 0.28822 NaN 1 Median 0.29901 0.28822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7010800 4544500 2466300 7010800 4544500 2466300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 286 3169 294 1218 1236;1237 1236 2 AALVLEDGSVLR ______________________________ ______________________________ M A A L R G 2 1 0 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 2 0 0 12 0 1241.698 F8VPD4;P27708 F8VPD4 2 13 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00011553 90.629 By MS/MS By MS/MS By matching By matching 6 3 1 1 1.1448 1.0568 20.45 11 Median 1.2372 1.177 16.044 6 0 Median 1.1448 0.97793 33.424 3 0 Median NaN NaN NaN 0 0 Median 1.122 0.98213 NaN 1 0 Median 0.78997 0.93092 NaN 1 0 Median NaN NaN NaN 0 0 Median 61031000 26985000 34047000 50128000 21958000 28170000 10427000 4796800 5630200 0 0 0 347150 164140 183010 129380 65519 63865 0 0 0 287 1057 295 1219;1220;1221;1222;1223;1224;1225;1226;1227;1228;1229 1238;1239;1240;1241;1242 1238 5 AALWALQGGTSVVIANGTHPK TKSRVGMGGMEAKVKAALWALQGGTSVVIA QGGTSVVIANGTHPKVSGHVITDIVEGKKV K A A P K V 4 0 1 0 0 1 0 3 1 1 2 1 0 0 1 1 2 1 0 2 0 0 21 0 2090.1273 P54886 P54886 314 334 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 1.3365E-06 43.12 By matching By MS/MS By matching 1 1 1 1.0673 0.99063 20.877 3 Median NaN NaN NaN 0 0 Median 1.5184 1.3703 NaN 1 0 Median 0.97376 0.99063 NaN 1 0 Median 1.0673 0.92789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11583000 5735100 5847800 0 0 0 441780 162980 278800 10363000 5150100 5212500 778500 421970 356530 0 0 0 0 0 0 288 2488 296 1230;1231;1232 1243;1244 1244 2 AAMAVGGAGGSR ______________________________ ______________________________ M A A S R V 4 1 0 0 0 0 0 4 0 0 0 0 1 0 0 1 0 0 0 1 0 0 12 0 1003.4869 O14744;G3V580;G3V2X6;C9JSX3;G3V2L6;G3V507;G3V2F5 O14744 2 13 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.00032233 82.287 By MS/MS By MS/MS 2 1 1.1596 1.0026 16.433 3 Median 1.0062 1.0018 23.24 2 1 Median 1.1596 1.0026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22251000 10449000 11802000 7103400 3468300 3635100 15148000 6980800 8167000 0 0 0 0 0 0 0 0 0 0 0 0 289 1492 297 1233;1234;1235 1245;1246;1247 1247 3 AAMDNSEIAGEK NAAVQAVNAHSNILKAAMDNSEIAGEKKSA ILKAAMDNSEIAGEKKSAQWRTVEGALKER K A A E K K 3 0 1 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 12 0 1234.55 Q16891;B9A067;C9J406;H7C463 Q16891 258 269 IMMT MICOS complex subunit MIC60 yes no 2 0.0038305 67.726 By MS/MS By MS/MS 1 2 0.97364 0.85954 1.8573 3 Median 0.85038 0.83634 NaN 1 0 Median 0.97827 0.86302 0.57036 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7160600 3715100 3445500 2144100 1204700 939430 5016500 2510400 2506100 0 0 0 0 0 0 0 0 0 0 0 0 290 3001 298 1236;1237;1238 1248;1249;1250;1251 1250 4 AAMDNSEIAGEKK NAAVQAVNAHSNILKAAMDNSEIAGEKKSA LKAAMDNSEIAGEKKSAQWRTVEGALKERR K A A K K S 3 0 1 1 0 0 2 1 0 1 0 2 1 0 0 1 0 0 0 0 0 0 13 1 1362.6449 Q16891;B9A067;C9J406;H7C463 Q16891 258 270 IMMT MICOS complex subunit MIC60 yes no 2;3 0.00048524 66.595 By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 1.2079 1.1008 22.991 9 Median 0.97551 1.0124 7.8107 2 0 Median 1.6251 1.5707 7.1945 2 0 Median 0.7327 0.84662 3.2247 2 0 Median 1.3107 1.1614 4.387 2 0 Median NaN NaN NaN 0 0 Median 1.2079 1.1008 NaN 1 0 Median 11636000 5580100 6055700 1899500 911140 988330 2386000 748270 1637700 5004800 2924700 2080200 2113700 892680 1221000 0 0 0 231810 103300 128510 291 3001 299 1239;1240;1241;1242;1243;1244;1245;1246;1247 1252;1253;1254 1253 3 AAMEALVVEVTK LQISHEAAACITGLRAAMEALVVEVTKQPA GLRAAMEALVVEVTKQPAIISQLDPVNERM R A A T K Q 3 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 12 0 1259.6795 Q08211 Q08211 1105 1116 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00013319 89.171 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 3 4 2 6 1 1.23 1.2723 60.325 15 Median 0.64009 0.63396 NaN 1 0 Median 1.5901 1.3795 11.442 2 0 Median 1.2164 1.2974 14.64 3 0 Median 1.557 1.3473 6.915 2 0 Median 1.0553 1.0911 86.335 6 1 Median 1.6985 1.4104 NaN 1 0 Median 143880000 67973000 75905000 2568700 1222700 1346100 6720600 2658200 4062400 61231000 30401000 30830000 11482000 4430600 7051500 59210000 28167000 31043000 2665600 1094600 1571000 292 2736 300;301 1248;1249;1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261;1262;1263;1264 1255;1256;1257;1258;1259;1260;1261;1262;1263;1264;1265;1266;1267 1262 1417 13 AAMEPIVISAK PEFSSIPAQISPEGRAAMEPIVISAKTMLE PEGRAAMEPIVISAKTMLESAGGLIQTARA R A A A K T 3 0 0 0 0 0 1 0 0 2 0 1 1 0 1 1 0 0 0 1 0 0 11 0 1128.6213 Q9Y490 Q9Y490 1594 1604 TLN1 Talin-1 yes yes 2 0.0011704 60.518 By MS/MS By MS/MS 2 2 0.93996 0.85288 15.544 4 Median 0.79362 0.7677 24.6 2 0 Median 0.96047 0.85288 2.9905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51340000 26743000 24596000 30067000 16866000 13201000 21273000 9877100 11396000 0 0 0 0 0 0 0 0 0 0 0 0 293 4441 302 1265;1266;1267;1268 1268;1269;1270;1271;1272 1271 5 AAMFPETLDEGMQIPSTQFDAAHPTNVQR DIDGQYAMTRAQRVRAAMFPETLDEGMQIP PSTQFDAAHPTNVQRLAEPSQMLKHAVVNL R A A Q R L 4 1 1 2 0 3 2 1 1 1 1 0 2 2 3 1 3 0 0 1 0 0 29 0 3201.4859 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y7Z0 A0A2R8Y804 96 124 CTNNB1 Catenin beta-1 yes no 3 0.013004 16.014 By MS/MS 1 0.51026 0.50494 NaN 1 Median 0.51026 0.50494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1927600 1211900 715730 1927600 1211900 715730 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 294 368 303 1269 1273;1274 1273 2 AAMFTAGSNFNHVVQNEK VTGLLMVVFGECLRKAAMFTAGSNFNHVVQ FTAGSNFNHVVQNEKSDTHTLVTSGVYAWF K A A E K S 3 0 3 0 0 1 1 1 1 0 0 1 1 2 0 1 1 0 0 2 0 0 18 0 1963.921 O60725 O60725 176 193 ICMT Protein-S-isoprenylcysteine O-methyltransferase yes yes 3 0.00014269 52.172 By MS/MS By MS/MS 2 1 1.5035 1.3565 21.144 3 Plateau 1.2092 1.1899 27.922 2 1 Median 1.5353 1.3565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34723000 13768000 20955000 24279000 9613400 14665000 10444000 4154900 6289600 0 0 0 0 0 0 0 0 0 0 0 0 295 1628 304 1270;1271;1272 1275;1276 1275 1 AAMGPGISR KCFGARMEFGTAGLRAAMGPGISRMNDLTI GTAGLRAAMGPGISRMNDLTIIQTTQGFCR R A A S R M 2 1 0 0 0 0 0 2 0 1 0 0 1 0 1 1 0 0 0 0 0 0 9 0 858.43817 Q96G03;E7ENQ8;E9PD70 Q96G03 64 72 PGM2 Phosphoglucomutase-2 yes no 2 0.00094209 89.355 By MS/MS By MS/MS 1 1 1.015 0.94978 3.678 2 Median 0.91534 0.9254 NaN 1 0 Median 1.1255 0.97481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6814600 3132500 3682100 2074700 981940 1092800 4739900 2150500 2589400 0 0 0 0 0 0 0 0 0 0 0 0 296 3652 305 1273;1274 1277;1278 1278 2 AAMIVNQLSK LTKLLNDEDPVVVTKAAMIVNQLSKKEASR VVVTKAAMIVNQLSKKEASRRALMGSPQLV K A A S K K 2 0 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 10 0 1073.5903 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 162 171 JUP Junction plakoglobin yes no 2 0.0087007 59.153 By MS/MS By MS/MS 1 1 0.69059 0.70534 2.8831 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67807 0.69111 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70334 0.71987 NaN 1 1 Median NaN NaN NaN 0 0 Median 18933000 11166000 7766800 0 0 0 0 0 0 9921200 5857400 4063900 0 0 0 9011600 5308700 3703000 0 0 0 297 2013 306 1275;1276 1279;1280 1280 2 AAMIWIVGEYAER TLCENLDSLDEPDARAAMIWIVGEYAERID ARAAMIWIVGEYAERIDNADELLESFLEGF R A A E R I 3 1 0 0 0 0 2 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 13 0 1507.7493 Q10567;C9J1E7;K7EJ01;H7C034;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 408 420 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.01125 52.79 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0348 0.96935 15.337 4 Median 1.1005 1.1012 NaN 1 1 Median 0.97307 0.84983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81373 0.8533 NaN 1 0 Median 1.3242 1.1196 NaN 1 0 Median 3600900 1693400 1907500 1412700 669300 743360 1778900 803410 975530 0 0 0 0 0 0 337880 189350 148530 71417 31303 40114 298 128;2752 307 1277;1278;1279;1280 1281;1282 1281 2 AAMTDAMVPR EVEVAKLEKQLLEEKAAMTDAMVPRSSYEK LLEEKAAMTDAMVPRSSYEKLQSSLESEVS K A A P R S 3 1 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 10 0 1061.4998 Q9P0K7 Q9P0K7 777 786 RAI14 Ankycorbin yes yes 2 0.0030923 57.96 By MS/MS By matching 1 1 1.6909 1.4406 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6909 1.4406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1927700 943980 983690 0 0 0 0 0 0 0 0 0 1567400 773640 793730 0 0 0 360290 170340 189960 299 4204 308 1281;1282 1283;1284 1284 2 AANAAENDFSVSQAEMSSR LKKQMEYERQVASLKAANAAENDFSVSQAE AENDFSVSQAEMSSRQAMLENASDIKLEKF K A A S R Q 5 1 2 1 0 1 2 0 0 0 0 0 1 1 0 4 0 0 0 1 0 0 19 0 1983.8592 Q8NE71;H0YGW7;Q5STZ8 Q8NE71 276 294 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2;3 2.6311E-58 217.88 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 3 5 1 1.1544 1.2726 18.108 13 Linear 1.1309 1.0913 4.6266 2 0 Median 0.80782 0.71376 25.942 2 0 Median 1.1544 1.2241 8.733 3 0 Plateau 1.1868 1.016 2.9294 5 0 Median NaN NaN NaN 0 0 Median 1.2167 1.0122 NaN 1 0 Median 64337000 28868000 35468000 19186000 8663100 10523000 1031800 526000 505770 24790000 11262000 13529000 19019000 8294300 10725000 0 0 0 309350 123160 186190 300 3427 309;310 1283;1284;1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295 1285;1286;1287;1288;1289;1290;1291;1292;1293;1294;1295;1296;1297 1288 1722 13 AANATTNPSQLLPLELVDK ______________________________ TTNPSQLLPLELVDKCIGSRIHIVMKSDKE M A A D K C 3 0 2 1 0 1 1 0 0 0 4 1 0 0 2 1 2 0 0 1 0 0 19 0 1994.0684 B8ZZF8;Q9Y4Y9 B8ZZF8 2 20 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes no 2 1.2756E-06 59.306 By MS/MS By MS/MS By MS/MS 1 2 2 0.86854 0.67337 6.2258 5 Median NaN NaN NaN 0 0 Median 0.86854 0.71815 NaN 1 0 Median 0.66433 0.67269 0.14279 2 0 Median 0.90332 0.70483 10.913 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20301000 11770000 8531200 0 0 0 1924300 959960 964320 17195000 10205000 6990000 1182500 605610 576870 0 0 0 0 0 0 301 646 311 1296;1297;1298;1299;1300 1298;1299;1300;1301;1302 1300 5 AANDAGYFNDEMAPIEVK EECDKYALQSQQRWKAANDAGYFNDEMAPI DAGYFNDEMAPIEVKTKKGKQTMQVDEHAR K A A V K T 4 0 2 2 0 0 2 1 0 1 0 1 1 1 1 0 0 0 1 1 0 0 18 0 1953.8778 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 189 206 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.024297 35.006 By MS/MS 1 1.0805 1.1262 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0805 1.1262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7706500 3862200 3844300 0 0 0 0 0 0 7706500 3862200 3844300 0 0 0 0 0 0 0 0 0 302 220 312 1301 1303 1303 1 AANGVVLATEK ALAAVAGGAPSVGIKAANGVVLATEKKQKS VGIKAANGVVLATEKKQKSILYDERSVHKV K A A E K K 3 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1071.5924 A0A024RA52;P25787 A0A024RA52 40 50 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 0.0028371 68.893 By MS/MS By MS/MS By matching 1 2 1 1.3662 1.2389 16.399 4 Median 1.1891 1.1064 NaN 1 1 Median 1.5968 1.3994 1.2498 2 0 Median NaN NaN NaN 0 0 Median 1.1654 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9294600 3710600 5584000 7043700 2796600 4247100 1720200 723360 996800 0 0 0 530790 190700 340090 0 0 0 0 0 0 303 7 313 1302;1303;1304;1305 1304;1305 1305 2 AANGVVLATEKK ALAAVAGGAPSVGIKAANGVVLATEKKQKS GIKAANGVVLATEKKQKSILYDERSVHKVE K A A K K Q 3 0 1 0 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 2 0 0 12 1 1199.6874 A0A024RA52;P25787 A0A024RA52 40 51 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2;3 0.007821 38.75 By MS/MS By MS/MS 2 2 1.0507 1.0408 20.281 4 Median 1.0227 1.0408 19.886 2 0 Median 1.1503 1.056 28.92 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679100 1667900 2011300 2337600 1053500 1284100 1341500 614340 727160 0 0 0 0 0 0 0 0 0 0 0 0 304 7 314 1306;1307;1308;1309 1306;1307 1306 2 AANLEMFK ASSPRSSSRMEERLKAANLEMFKGKGIEER RMEERLKAANLEMFKGKGIEERQQLIKQLR K A A F K G 2 0 1 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 8 0 922.45824 A0A0U1RRM1;Q8WXI9;A0A0U1RR34 A0A0U1RRM1 148 155 GATAD2B Transcriptional repressor p66-beta yes no 2 0.018519 47.849 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.0256 0.96816 10.117 6 Median 0.97396 0.94522 NaN 1 0 Median 1.0075 0.88003 NaN 1 0 Median 0.96418 0.99166 NaN 1 0 Median 1.236 1.0601 NaN 1 0 Median 1.1039 1.1415 NaN 1 0 Median 1.0441 0.89261 NaN 1 0 Median 14700000 6732400 7967400 1842700 785400 1057300 1127800 576940 550850 8023900 3779700 4244100 369820 126820 243000 3058700 1316000 1742600 276990 147480 129510 305 311 315 1310;1311;1312;1313;1314;1315 1308 1308 1 AANNGALPPDLSYIVR FDYFPKPYPNSEAARAANNGALPPDLSYIV ANNGALPPDLSYIVRARHGGEDYVFSLLTG R A A V R A 3 1 2 1 0 0 0 1 0 1 2 0 0 0 2 1 0 0 1 1 0 0 16 0 1669.8788 P08574 P08574 187 202 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 2 0.0017019 38.021 By MS/MS By MS/MS By matching 2 1 1 0.87957 0.81735 16.411 4 Median 0.73205 0.7031 23.968 2 0 Median NaN NaN NaN 0 0 Median 0.86967 0.83256 NaN 1 0 Median 0.97871 0.80243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19602000 10258000 9344000 14932000 7919900 7012500 0 0 0 4294300 2158300 2136000 374740 179290 195450 0 0 0 0 0 0 306 1903 316 1316;1317;1318;1319 1309;1310;1311;1312 1309 4 AANPVDFLSK DLTLYHRTSVTDFLRAANPVDFLSKASEIM TDFLRAANPVDFLSKASEIMVDDEELAQHP R A A S K A 2 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 10 0 1060.5553 Q8IY81 Q8IY81 260 269 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.0061873 49.418 By MS/MS By matching 3 2 1 1.0114 7.0401 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99139 1.0118 7.8607 3 0 Plateau 1.2175 1.0184 0.97263 2 0 Median 23017000 11710000 11307000 0 0 0 0 0 0 0 0 0 0 0 0 20505000 10562000 9942700 2511600 1147300 1364300 307 3338 317 1320;1321;1322;1323;1324 1313;1314;1315;1316;1317 1314 5 AANQVEETLHTHLPQTPETNFR HKDLDSRLKSSFFDKAANQVEETLHTHLPQ TLHTHLPQTPETNFRDSSYPFANKESIGSE K A A F R D 2 1 2 0 0 2 3 0 2 0 2 0 0 1 2 0 4 0 0 1 0 0 22 0 2532.2357 Q5VZL5 Q5VZL5 202 223 ZMYM4 Zinc finger MYM-type protein 4 yes yes 3 2.3706E-05 53.909 By MS/MS 1 0.76311 0.83979 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76311 0.83979 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5592300 3391100 2201200 0 0 0 0 0 0 5592300 3391100 2201200 0 0 0 0 0 0 0 0 0 308 3117 318 1325 1318 1318 1 AANVLLSEHGEVK LDYLHSEKKIHRDIKAANVLLSEHGEVKLA IKAANVLLSEHGEVKLADFGVAGQLTDTQI K A A V K L 2 0 1 0 0 0 2 1 1 0 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1365.7252 H0Y630;B4DR80;Q9Y6E0 H0Y630 65 77 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit yes no 2;3 0.0003807 74.944 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 2 2 1 1 1 0.95939 0.87095 24.948 11 Median 1.0457 1.0024 22.218 4 0 Median 0.91293 0.78556 14.593 2 1 Median 1.2235 1.2223 29.474 2 0 Median 0.95939 0.82415 NaN 1 0 Median 0.70991 0.83814 NaN 1 0 Median 0.83882 0.69318 NaN 1 0 Median 35129000 16696000 18432000 17530000 8104800 9425600 4684300 2384800 2299500 6019500 2780400 3239000 2236900 722580 1514300 1325400 676090 649300 3332100 2027400 1304700 309 602 319 1326;1327;1328;1329;1330;1331;1332;1333;1334;1335;1336 1319;1320;1321;1322;1323 1319 5 AANVLLSEQGDVK LDYLHSEKKIHRDIKAANVLLSEQGDVKLA IKAANVLLSEQGDVKLADFGVAGQLTDTQI K A A V K L 2 0 1 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1342.7092 Q8NBY1;B4E0Y9;Q9P289;C9JJV0 Q8NBY1 147 159 STK26;STK25 Serine/threonine-protein kinase 26 no no 2 4.5E-05 125.74 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 0.96838 0.84808 29.049 6 Median 0.8288 0.76665 NaN 1 0 Median 0.7209 0.61201 42.632 2 0 Median 0.96317 0.93035 NaN 1 0 Median 1.0788 0.94866 12.346 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47907000 24537000 23369000 15557000 8025300 7531800 8549200 4607600 3941600 12927000 6873500 6053700 10873000 5031100 5842200 0 0 0 0 0 0 310 612 320 1337;1338;1339;1340;1341;1342 1324;1325;1326;1327 1324 4 AANWYER TDELTPIESAVSVFKAANWYEREIWDMFGV ESAVSVFKAANWYEREIWDMFGVFFANHPD K A A E R E 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 7 0 908.41407 O75489 O75489 162 168 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.031276 49.358 By MS/MS 1 0.98954 0.93334 NaN 1 Median 0.98954 0.93334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2557600 1370300 1187300 2557600 1370300 1187300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 311 1678 321 1343 1328 1328 1 AAPAPTASSTININTSTSK IMMLKSCDAAAAVAKAAPAPTASSTININT PTASSTININTSTSKFLMNVITIEDYKSTY K A A S K F 4 0 2 0 0 0 0 0 0 2 0 1 0 0 2 4 4 0 0 0 0 0 19 0 1830.9323 Q86Y37 Q86Y37 103 121 CACUL1 CDK2-associated and cullin domain-containing protein 1 yes yes 2 5.6006E-13 102.28 By MS/MS By MS/MS By MS/MS 1 1 1 0.92595 0.87781 9.3551 3 Median 1.0057 0.93955 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83798 0.87781 NaN 1 0 Median 0.92595 0.7809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11693000 5996300 5697100 3918500 2038700 1879800 0 0 0 6673400 3414000 3259300 1101600 543590 558040 0 0 0 0 0 0 312 3304 322 1344;1345;1346 1329;1330;1331;1332;1333 1332 5 AAPDEDREPESAR QLPPDPPAAPPGRARAAPDEDREPESARMQ ARAAPDEDREPESARMQRAQMAALAAMRAA R A A A R M 3 2 0 2 0 0 3 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 13 1 1441.6433 Q99856 Q99856 41 53 ARID3A AT-rich interactive domain-containing protein 3A yes yes 3 0.00024752 65.563 By matching By MS/MS By MS/MS 1 1 2 0.79906 0.8148 13.575 4 Median 0.6503 0.66675 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69781 0.7787 NaN 1 0 Median 0.97078 0.8821 4.8163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8141100 4697700 3443300 117910 77299 40610 0 0 0 7285600 4270600 3015000 737510 349790 387720 0 0 0 0 0 0 313 3772 323 1347;1348;1349;1350 1334;1335;1336 1334 3 AAPDILIATPGR AVGGLDVKSQEAALRAAPDILIATPGRLID ALRAAPDILIATPGRLIDHLHNCPSFHLSS R A A G R L 3 1 0 1 0 0 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 12 0 1193.6768 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 307 318 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 9.9476E-05 91.584 By matching By MS/MS By matching 1 2 1 0.88801 0.82476 18.506 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4233 1.1846 NaN 1 0 Median 0.79941 0.82476 0.0035105 2 0 Median 0.97032 0.80647 NaN 1 0 Median 19030000 10208000 8821800 0 0 0 0 0 0 0 0 0 193080 63864 129220 18383000 9919400 8463200 454120 224790 229330 314 635 324 1351;1352;1353;1354 1337;1338;1339;1340 1340 4 AAPEEHDSPTEASQPIVEEEETK ______________________________ PTEASQPIVEEEETKTFKDLGVTDVLCEAC M A A T K T 3 0 0 1 0 1 7 0 1 1 0 1 0 0 3 2 2 0 0 1 0 0 23 0 2522.1296 Q9H0S4;F5H1N9 Q9H0S4 2 24 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 3 8.5076E-18 77.959 By MS/MS By matching 1 2 0.56438 0.51678 3.0717 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55718 0.5361 NaN 1 0 Median 0.57827 0.51053 1.7189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23084000 13275000 9809000 0 0 0 0 0 0 19288000 11111000 8177300 3796100 2164400 1631700 0 0 0 0 0 0 315 3928 325 1355;1356;1357 1341;1342 1341 2 AAPEEPQQRPPEAVAAAPAGTTSSR RPPEQQDQEGGEAAKAAPEEPQQRPPEAVA PEAVAAAPAGTTSSRVLRGGRDRGRAAAAA K A A S R V 7 2 0 0 0 2 3 1 0 0 0 0 0 0 5 2 2 0 0 1 0 0 25 1 2488.2306 A0A0A6YYC7;Q96JP5 A0A0A6YYC7 24 48 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 yes no 3 2.9114E-08 42.806 By MS/MS By MS/MS 1 1 0.43044 0.43353 17.161 2 Median 0.37452 0.38399 NaN 1 0 Median 0.49472 0.48947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5113600 3592400 1521200 3542500 2447600 1094900 1571100 1144800 426340 0 0 0 0 0 0 0 0 0 0 0 0 316 202 326 1358;1359 1343;1344;1345 1343 3 AAPEGSGLGEDAR ______________________________ ______________________________ M A A A R L 3 1 0 1 0 0 2 3 0 0 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1228.5684 Q96G03;E7ENQ8;E9PD70 Q96G03 2 14 PGM2 Phosphoglucomutase-2 yes no 2 7.5034E-05 85.958 By matching By MS/MS 1 1 0.48681 0.45501 76.37 2 Median 0.26265 0.26515 NaN 1 0 Median 0.90227 0.78081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13790000 8708400 5082100 5933900 4784400 1149500 7856600 3924000 3932600 0 0 0 0 0 0 0 0 0 0 0 0 317 3652 327 1360;1361 1346;1347 1347 2 AAPFSLEYR ______________________________ FSTEERAAPFSLEYRVFLKNEKGQYISPFH R A A Y R V 2 1 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 9 0 1052.5291 Q15181;Q5SQT6 Q15181 10 18 PPA1 Inorganic pyrophosphatase yes no 2 0.00059728 110.81 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0199 0.86314 23.275 7 Median 0.93713 0.89146 8.128 2 0 Median 1.0199 0.84815 36.364 3 0 Median 1.1505 1.1226 NaN 1 0 Median 1.035 0.86314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 214020000 106720000 107300000 182230000 91233000 90992000 19087000 9345800 9740900 9911400 4768300 5143100 2796800 1369800 1426900 0 0 0 0 0 0 318 2934 328 1362;1363;1364;1365;1366;1367;1368 1348;1349;1350;1351;1352;1353;1354;1355;1356;1357;1358;1359 1348 12 AAPGAEFAPNK EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY AFNRAAPGAEFAPNKRRRY___________ R A A N K R 4 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 11 0 1071.5349 Q15233 Q15233 457 467 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.00038299 70.816 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.73874 0.69843 14.592 4 Median NaN NaN NaN 0 0 Median 0.68132 0.58706 NaN 1 0 Median 0.65908 0.63923 NaN 1 0 Median 0.93275 0.79983 NaN 1 0 Median 0.801 0.76311 NaN 1 0 Median NaN NaN NaN 0 0 Median 30871000 17138000 13733000 0 0 0 1701700 829030 872630 16371000 9679900 6690600 8303300 4117000 4186300 4495300 2511600 1983800 0 0 0 319 2935 329 1369;1370;1371;1372 1360;1361;1362;1363;1364;1365;1366 1365 7 AAPGAEFAPNKR EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY FNRAAPGAEFAPNKRRRY____________ R A A K R R 4 1 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 12 1 1227.636 Q15233 Q15233 457 468 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 1.2569E-06 122.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 4 5 3 0.96906 0.92481 24.65 22 Median 1.0298 1.043 6.6278 2 0 Median 1.2242 1.1187 13.187 4 0 Linear 0.67798 0.76376 12.263 4 0 Median 1.0087 0.93565 4.77 4 0 Median 0.7154 0.73285 33.836 5 0 Median 1.1192 1.0041 16.611 3 0 Median 196090000 104690000 91398000 4446000 2246400 2199600 18425000 8087800 10337000 64035000 36712000 27322000 29596000 14324000 15272000 62141000 35064000 27078000 17445000 8256800 9188600 320 2935 330 1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394 1367;1368;1369;1370;1371;1372;1373;1374;1375;1376;1377;1378;1379;1380;1381;1382;1383;1384;1385;1386;1387;1388;1389;1390;1391;1392;1393;1394;1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407 1374 41 AAPGPGPSTFSFVPPSK TGEPPSYSSGSDSSKAAPGPGPSTFSFVPP PGPGPSTFSFVPPSKASLAPTPAASPVAPS K A A S K A 2 0 0 0 0 0 0 2 0 0 0 1 0 2 5 3 1 0 0 1 0 0 17 0 1642.8355 A0A494C1F2;P35658 A0A494C1F2 511 527 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.016942 40.066 By MS/MS 1 0.4438 0.48813 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4438 0.48813 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31277000 20395000 10882000 0 0 0 0 0 0 31277000 20395000 10882000 0 0 0 0 0 0 0 0 0 321 467 331 1395 1408 1408 1 AAPLAAPPPAPAAPPAVAPPAGPR PPSPGPAQPGPRAQRAAPLAAPPPAPAAPP APAAPPAVAPPAGPRRAPPPAVAAREPPLP R A A P R R 10 1 0 0 0 0 0 1 0 0 1 0 0 0 10 0 0 0 0 1 0 0 24 0 2124.1844 Q6SPF0 Q6SPF0 174 197 SAMD1 Atherin yes yes 3 2.3733E-05 46.953 By MS/MS 1 0.24709 0.25475 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24709 0.25475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6619400 5570900 1048500 0 0 0 0 0 0 6619400 5570900 1048500 0 0 0 0 0 0 0 0 0 322 3182 332 1396 1409 1409 1 AAPLAGFGYGLPISR YMYSTAPRPSLEPTRAAPLAGFGYGLPISR AAPLAGFGYGLPISRLYARYFQGDLKLYSM R A A S R L 3 1 0 0 0 0 0 3 0 1 2 0 0 1 2 1 0 0 1 0 0 0 15 0 1488.8089 Q15120 Q15120 318 332 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 7.0547E-07 96.604 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.99933 0.90997 23.703 6 Median 1.0282 1.0195 39.883 2 0 Median 0.99933 0.84748 22.28 2 0 Median NaN NaN NaN 0 0 Median 1.2591 1.0955 NaN 1 0 Median 0.8276 0.83466 NaN 1 0 Median NaN NaN NaN 0 0 Median 7240300 2947900 4292400 2313100 1137700 1175400 1566500 589450 977050 0 0 0 2363400 808860 1554500 997310 411850 585460 0 0 0 323 2929 333 1397;1398;1399;1400;1401;1402 1410;1411;1412 1412 3 AAPPPGQSQAQSQGQPVPTAPAR RPGLAPAGMEPARKRAAPPPGQSQAQSQGQ QAQSQGQPVPTAPARSRSAKRRKMADKILP R A A A R S 5 1 0 0 0 5 0 2 0 0 0 0 0 0 6 2 1 0 0 1 0 0 23 0 2240.1298 Q6STE5;C9JYI7 Q6STE5 72 94 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 3 0.028332 12.802 By MS/MS 1 0.50967 0.44141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50967 0.44141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 754150 363600 390550 0 0 0 0 0 0 0 0 0 754150 363600 390550 0 0 0 0 0 0 324 3183 334 1403 1413 1413 1 AAPPQIPDTRR ______________________________ MHNKAAPPQIPDTRRELAELVKRKQELAET K A A R R E 2 2 0 1 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 0 0 0 11 1 1220.6626 Q9HAF1 Q9HAF1 7 17 MEAF6 Chromatin modification-related protein MEAF6 yes yes 3 0.015605 40.589 By MS/MS 1 0.71483 0.77525 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71483 0.77525 NaN 1 1 Median NaN NaN NaN 0 0 Median 5037600 3083700 1953900 0 0 0 0 0 0 0 0 0 0 0 0 5037600 3083700 1953900 0 0 0 325 4008 335 1404 1414 1414 1 AAPQPLNLVSSVTLSK QAMMTHLHVKSTEPKAAPQPLNLVSSVTLS APQPLNLVSSVTLSKSASEASPQSLPHTPT K A A S K S 2 0 1 0 0 1 0 0 0 0 3 1 0 0 2 3 1 0 0 2 0 0 16 0 1623.9196 A0A3B3IT14;A0A3B3IS87;G5E965;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;C9J0F0;A0A3B3IST6;A0A3B3IUB6;A0A3B3IRS5;A0A3B3IST0;A0A3B3IS20;Q9H334;A0A3B3ISQ6 A0A3B3IT14 278 293 FOXP1 Forkhead box protein P1 yes no 2 0.00084192 41.54 By MS/MS 1 0.63929 0.67963 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63929 0.67963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3849600 1996100 1853500 0 0 0 0 0 0 3849600 1996100 1853500 0 0 0 0 0 0 0 0 0 326 224 336 1405 1415;1416 1416 2 AAPRPAPVAQPPAAAPPSAVGSSAAAPR TSRMAPPASRAPQMRAAPRPAPVAQPPAAA AAPPSAVGSSAAAPRQPGLMAQMATTAAGV R A A P R Q 11 2 0 0 0 1 0 1 0 0 0 0 0 0 8 3 0 0 0 2 0 0 28 1 2532.3561 Q9Y6H1;Q5T1J5 Q9Y6H1 24 51 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 3;4 4.9947E-09 44.648 By matching By matching By MS/MS By matching 2 1 2 1 0.25403 0.28684 48.646 6 Median 0.29365 0.32631 1.9537 2 0 Median 0.64596 0.71498 NaN 1 0 Median 0.19362 0.20076 25.899 2 1 Median NaN NaN NaN 0 0 Median 0.22192 0.25565 NaN 1 0 Median NaN NaN NaN 0 0 Median 75046000 54241000 20804000 24436000 17628000 6808300 10977000 6584000 4393300 35248000 26936000 8311900 0 0 0 4384600 3093600 1291000 0 0 0 327 4492 337 1406;1407;1408;1409;1410;1411 1417;1418 1417 2 AAPSDGFKPR ______________________________ ______________________________ M A A P R E 2 1 0 1 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 10 1 1044.5352 Q92979 Q92979 2 11 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.00018417 117.04 By MS/MS By MS/MS By MS/MS 1 1 2 0.87962 0.89118 19.724 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8708 0.91851 NaN 1 1 Median 0.97678 0.86465 NaN 1 0 Median 0.69854 0.76132 30.014 2 0 Median NaN NaN NaN 0 0 Median 45347000 22948000 22398000 0 0 0 0 0 0 28031000 14178000 13854000 5876000 2935000 2941000 11439000 5835400 5603800 0 0 0 328 3571 338 1412;1413;1414;1415 1419;1420;1421 1421 3 AAPTAASDQPDSAATTEK LEETAQLPSAPQGSRAAPTAASDQPDSAAT TAASDQPDSAATTEKAKKIKNLKKKLRQVE R A A E K A 6 0 0 2 0 1 1 0 0 0 0 1 0 0 2 2 3 0 0 0 0 0 18 0 1730.7959 Q9BRP8 Q9BRP8 133 150 WIBG Partner of Y14 and mago yes yes 2 0.0035401 30.059 By MS/MS 1 0.5868 0.57436 NaN 1 Median 0.5868 0.57436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2413700 1503500 910240 2413700 1503500 910240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 329 3799 339 1416 1422;1423 1423 2 AAPVDLELKK ______________________________ ______________________________ M A A K K A 2 0 0 1 0 0 1 0 0 0 2 2 0 0 1 0 0 0 0 1 0 0 10 1 1082.6336 O60925;E5RGS4;D6RGG5 O60925 2 11 PFDN1 Prefoldin subunit 1 yes no 2 0.00032039 91.069 By MS/MS By MS/MS By MS/MS 1 1 1 1.0824 0.9611 2.9065 3 Median 1.0263 0.9611 NaN 1 0 Median 1.0824 0.93836 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1854 0.99425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134790000 65008000 69777000 57296000 27894000 29402000 74705000 35742000 38964000 0 0 0 2783800 1371900 1411900 0 0 0 0 0 0 330 841 340 1417;1418;1419 1424;1425;1426;1427 1424 4 AAPVVAPPGVVVSR ______________________________ MAAPVVAPPGVVVSRANKRSGAGPGGSGGG M A A S R A 3 1 0 0 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 5 0 0 14 0 1317.7769 A0A3B3IUB1;Q13144;A0A3B3IS56;A0A3B3IRP4;A0A3B3IUF2;A0A3B3ISM8;A0A3B3ISX3;C9JRD9;A0A3B3IT53 A0A3B3IUB1 2 15 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes no 2 0.0003191 72.006 By MS/MS 1 0.82474 0.7805 NaN 1 Median 0.82474 0.7805 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8066100 4256100 3810000 8066100 4256100 3810000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 331 443 341 1420 1428 1428 1 AAQAPSSFQLLYDLK EGGKGALALAQAVQRAAQAPSSFQLLYDLK AAQAPSSFQLLYDLKLPVEDKIRIIAQKIY R A A L K L 3 0 0 1 0 2 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 0 15 0 1650.8617 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 805 819 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 9.3738E-05 80.979 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.0408 0.95403 16.148 6 Median 0.88568 0.85192 NaN 1 0 Median 1.3186 1.1392 21.385 3 0 Median 0.88926 0.97532 NaN 1 0 Median 1.1113 0.9332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48504000 24227000 24277000 28393000 14324000 14069000 12086000 5501200 6584700 7290900 4072300 3218600 734120 329660 404460 0 0 0 0 0 0 332 1968 342 1421;1422;1423;1424;1425;1426 1429;1430;1431;1432;1433;1434 1430 6 AAQASDLEK LLQDNAKLVPVLSAKAAQASDLEKIHLDEK PVLSAKAAQASDLEKIHLDEKSFRWLHNED K A A E K I 3 0 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 9 0 931.46108 P37837 P37837 278 286 TALDO1 Transaldolase yes yes 2 0.04318 32.841 By matching By MS/MS 2 2 1.0877 1.0436 5.7397 4 Median 1.064 1.0436 0.13299 2 0 Median 1.181 1.0043 9.1684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3736900 1674600 2062400 2019300 926820 1092500 1717700 747760 969910 0 0 0 0 0 0 0 0 0 0 0 0 333 2270 343 1427;1428;1429;1430 1435 1435 1 AAQDIKDEEPGDLGR SQAGKDDRESKLEGKAAQDIKDEEPGDLGR AAQDIKDEEPGDLGRPKPECEGYDPNALYC K A A G R P 2 1 0 3 0 1 2 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 15 1 1612.7693 Q9BTC0 Q9BTC0 242 256 DIDO1 Death-inducer obliterator 1 yes yes 2;3 9.5673E-07 91.076 By MS/MS By MS/MS 4 2 0.86293 0.8685 58.27 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70131 0.79134 75.179 4 0 Median 1.0221 0.98072 4.1723 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19505000 10639000 8865900 0 0 0 0 0 0 16379000 9208300 7170800 3125600 1430500 1695100 0 0 0 0 0 0 334 3824 344 1431;1432;1433;1434;1435;1436 1436;1437;1438;1439 1436 4 AAQDRDQIYR SRSYRGGGGGGGGWRAAQDRDQIYRRRSPS GGGWRAAQDRDQIYRRRSPSPYYSRGGYRS R A A Y R R 2 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 1 1234.6054 P62995;H7C2L4 P62995 252 261 TRA2B Transformer-2 protein homolog beta yes no 2;3 0.0001358 121.83 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 2 13 6 1.016 1.0904 19.215 28 Median 1.1245 1.1832 NaN 1 0 Median 1.2489 1.1663 47.869 3 0 Median 1.0776 1.1146 32.006 4 0 Median 1.3854 1.23 6.8436 2 0 Median 0.97003 1.0591 6.8708 12 0 Median 1.3235 1.167 9.208 6 0 Median 59512000 29823000 29690000 198000 89941 108060 1044600 431520 613080 1694000 835900 858090 1050000 490390 559650 52064000 26468000 25596000 3462000 1506700 1955400 335 2614 345 1437;1438;1439;1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461;1462;1463;1464;1465 1440;1441;1442;1443;1444;1445;1446;1447;1448;1449;1450;1451;1452;1453;1454 1445 15 AAQEEYVK ASALKAWGGKKENLKAAQEEYVKRALANSL GKKENLKAAQEEYVKRALANSLACQGKYTP K A A V K R 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 8 0 936.45526 J3KPS3;P04075;H3BQN4;H3BR68 J3KPS3 327 334 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.0039759 84.244 By matching By MS/MS By matching 1 1 1 1.0925 1.1281 12.994 3 Median 1.149 1.1281 NaN 1 0 Median 1.0925 0.931 NaN 1 0 Median 1.083 1.1926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14476000 6897300 7578400 801670 361890 439780 13117000 6280900 6836200 556900 254490 302410 0 0 0 0 0 0 0 0 0 336 1310 346 1466;1467;1468 1455 1455 1 AAQEEYVKR ASALKAWGGKKENLKAAQEEYVKRALANSL KKENLKAAQEEYVKRALANSLACQGKYTPS K A A K R A 2 1 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 9 1 1092.5564 J3KPS3;P04075;H3BQN4;H3BR68 J3KPS3 327 335 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.0052222 63.48 By MS/MS By MS/MS By matching 1 1 1 1.2069 1.3147 8.7203 3 Median 1.2281 1.3147 NaN 1 0 Median 1.2069 1.1343 NaN 1 0 Median 1.1633 1.3234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7275000 3173200 4101900 1838400 804990 1033400 4989100 2186300 2802800 447610 181900 265710 0 0 0 0 0 0 0 0 0 337 1310 347 1469;1470;1471 1456;1457;1458 1457 3 AAQEQVLNASR MKRYKELVEMVKAKKAAQEQVLNASRAKK_ KAKKAAQEQVLNASRAKK____________ K A A S R A 3 1 1 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1185.6102 Q99543 Q99543 608 618 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes yes 2 0.058821 43.282 By MS/MS 1 0.99236 0.84823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99236 0.84823 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 643640 325780 317870 0 0 0 0 0 0 0 0 0 643640 325780 317870 0 0 0 0 0 0 338 3751 348 1472 1459 1459 1 AAQGEPQVQFK ______________________________ ______________________________ M A A F K L 2 0 0 0 0 3 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1201.6091 B5MDF5;P62826;A0A087X0W0 B5MDF5 2 12 RAN GTP-binding nuclear protein Ran yes no 2 0.00011469 123.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 1 2 2 1.0247 0.91053 59.543 14 Median 0.90629 0.82086 23.503 4 2 Median 1.14 0.95508 14.427 2 0 Median 0.97452 0.91677 22.031 3 0 Median 1.0134 0.84206 NaN 1 0 Median 1.0974 1.1424 9.5821 2 0 Median 0.36844 0.31601 142.82 2 1 Median 792010000 384280000 407730000 194300000 95013000 99285000 27639000 12370000 15269000 450040000 221050000 228990000 34679000 16210000 18469000 71810000 32100000 39710000 13539000 7536800 6001800 339 623 349 1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487 1460;1461;1462;1463;1464;1465;1466;1467;1468;1469;1470;1471;1472;1473;1474;1475;1476;1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488;1489 1485 30 AAQIFITELTLR DVKMISAEAPVLFAKAAQIFITELTLRAWI FAKAAQIFITELTLRAWIHTEDNKRRTLQR K A A L R A 2 1 0 0 0 1 1 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1374.7871 Q5T6K5;Q5T6K7;E9PI99;Q13952;A0A0A0MT00;E9PL11 Q5T6K5 72 83 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.00048458 77.379 By matching By MS/MS By matching By matching 1 2 1 1 1.009 1.0315 12.395 5 Median NaN NaN NaN 0 0 Median 1.3808 1.2133 NaN 1 0 Median 0.95763 0.98623 8.8834 2 0 Median 1.2215 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.009 0.88178 NaN 1 0 Median 15256000 7545300 7710600 0 0 0 624790 296010 328780 13770000 6856100 6913800 333300 116200 217100 0 0 0 527900 276990 250910 340 3091 350 1488;1489;1490;1491;1492 1490;1491 1491 2 AAQIPIVATTSTPGIVR ______________________________ QIPIVATTSTPGIVRNSKKRPASPSHNGSS M A A V R N 3 1 0 0 0 1 0 1 0 3 0 0 0 0 2 1 3 0 0 2 0 0 17 0 1693.9727 Q6PI98;K7ELX9;K7EQ79;K7ENM4;K7ENP7 Q6PI98 2 18 INO80C INO80 complex subunit C yes no 2 0.00053893 41.54 By matching By MS/MS 1 1 0.76641 0.72368 11.91 2 Median 0.83999 0.78726 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69928 0.66523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3510100 1891200 1618800 339030 185340 153690 0 0 0 3171000 1705900 1465100 0 0 0 0 0 0 0 0 0 341 3173 351 1493;1494 1492 1492 1 AAQLAESKTDELIKDAPTTQHDK HAVQALVQLFLERERAAQLAESKTDELIKD TDELIKDAPTTQHDKSGEWQETSGEIQWVS R A A D K S 4 0 0 3 0 2 2 0 1 1 2 3 0 0 1 1 3 0 0 0 0 0 23 2 2509.266 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 1046 1068 WAPAL Wings apart-like protein homolog yes no 4 0.034008 12.433 By MS/MS 1 0.60856 0.73127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60856 0.73127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8101200 5271800 2829400 0 0 0 0 0 0 8101200 5271800 2829400 0 0 0 0 0 0 0 0 0 342 3249 352 1495 1493 1493 1 AAQLATEIADIK ENFNIKQMKDLFEQKAAQLATEIADIKSKY EQKAAQLATEIADIKSKYDEERSLREAAEQ K A A I K S 4 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1242.682 Q15075 Q15075 165 176 EEA1 Early endosome antigen 1 yes yes 2 3.2995E-05 96.342 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0657 0.91823 9.1446 6 Median 0.9596 0.87878 12.939 2 0 Median 1.0926 0.96259 3.5241 2 0 Median 0.73421 0.80016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0735 0.89801 NaN 1 0 Median 108220000 51570000 56647000 75114000 34012000 41101000 20444000 9363300 11081000 12321000 8034400 4286500 0 0 0 0 0 0 338170 160020 178150 343 2926 353 1496;1497;1498;1499;1500;1501 1494;1495;1496 1494 3 AAQLVDKDSTFLSTLEHHLSR EQLDSVMDWLTNQPRAAQLVDKDSTFLSTL KDSTFLSTLEHHLSRYLKDVKQHHVKADKR R A A S R Y 2 1 0 2 0 1 1 0 2 0 4 1 0 1 0 3 2 0 0 1 0 0 21 1 2367.2183 Q969V3;K7EMW4;K7ELZ9;A0A0C4DGP7 Q969V3 465 485 NCLN Nicalin yes no 4 1.0295E-06 45.369 By matching By MS/MS 1 1 1.2125 1.1641 14.527 2 Median 1.2765 1.2901 NaN 1 0 Median 1.1517 1.0505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16093000 6472400 9621100 1864200 663740 1200400 14229000 5808700 8420600 0 0 0 0 0 0 0 0 0 0 0 0 344 3589 354 1502;1503 1497 1497 1 AAQQQEEQEEKEEEDDEQTLHR PDQGIAKAAPEEFRKAAQQQEEQEEKEEED QEEKEEEDDEQTLHRAREWDDWKDTHPRGY K A A H R A 2 1 0 2 0 5 8 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 22 1 2698.159 P78318 P78318 296 317 IGBP1 Immunoglobulin-binding protein 1 yes yes 4 0.00022791 28.202 By MS/MS 1 1.0187 1.1562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0187 1.1562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1768300 774260 994040 0 0 0 0 0 0 1768300 774260 994040 0 0 0 0 0 0 0 0 0 345 2638 355 1504 1498 1498 1 AAQRHETLTSLNLEK LTVVGCIFMVIEGKKAAQRHETLTSLNLEK AAQRHETLTSLNLEKKARLKEEAAMKAKTE K A A E K K 2 1 1 0 0 1 2 0 1 0 3 1 0 0 0 1 2 0 0 0 0 0 15 1 1709.906 Q96A26;F8W7Q4 Q96A26 125 139 FAM162A Protein FAM162A yes no 3 7.3077E-05 72.615 By matching By MS/MS 1 1 1.0567 0.98863 4.6132 2 Median 1.0303 1.0214 NaN 1 0 Median 1.0838 0.9569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10008000 5016000 4991600 5144100 2837800 2306300 4863500 2178200 2685300 0 0 0 0 0 0 0 0 0 0 0 0 346 1085 356 1505;1506 1499 1499 1 AAQSANISVR CSIEESFQRFDAILKAAQSANISVRGYVSC DAILKAAQSANISVRGYVSCALGCPYEGKI K A A V R G 3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 1 0 0 10 0 1015.5411 P35914 P35914 156 165 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 2 0.0011347 68.224 By MS/MS By MS/MS By matching 1 1 1 1.8784 1.5838 37.324 3 Median 0.93356 0.90055 NaN 1 0 Median 1.8784 1.5838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0769 1.8229 NaN 1 0 Median 3436300 1215800 2220500 874110 385520 488590 1839700 553860 1285800 0 0 0 0 0 0 0 0 0 722520 276380 446140 347 2252 357 1507;1508;1509 1500;1501;1502 1501 3 AAQVAPAAASSLGNPPPPPPSELKK ______________________________ SLGNPPPPPPSELKKAEQQQREEAGGEAAA M A A K K A 6 0 1 0 0 1 1 1 0 0 2 2 0 0 7 3 0 0 0 1 0 0 25 1 2394.2907 O14497 O14497 2 26 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 2.5477E-19 81.949 By MS/MS 1 0.22984 0.26657 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22984 0.26657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19936000 16126000 3810100 0 0 0 0 0 0 19936000 16126000 3810100 0 0 0 0 0 0 0 0 0 348 1480 358 1510 1503;1504 1503 2 AAQVAQDEEIAR KLQEEELLATQVDMRAAQVAQDEEIARLLM DMRAAQVAQDEEIARLLMAEEKKAYKKAKE R A A A R L 4 1 0 1 0 2 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1299.6419 Q8IVM0 Q8IVM0 196 207 CCDC50 Coiled-coil domain-containing protein 50 yes yes 2 9.1523E-06 98.048 By matching By MS/MS By matching 1 1 1 0.96824 0.80752 32.448 3 Median NaN NaN NaN 0 0 Median 0.79899 0.68583 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96824 0.80752 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4433 1.2821 NaN 1 0 Median 4924200 2500400 2423800 0 0 0 522900 304890 218010 0 0 0 3340100 1825100 1515000 0 0 0 1061200 370360 690870 349 3318 359 1511;1512;1513 1505;1506 1506 2 AAREELLAEFGSGTLDLPALTR AVPVWDVLASGYVSRAAREELLAEFGSGTL AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R A A T R R 4 2 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 22 1 2329.2278 P58107;A0A075B730 P58107 2548 2569 EPPK1 Epiplakin yes no 3 5.6015E-19 109.05 By MS/MS By MS/MS 1 1 0.87687 0.88495 5.2917 2 Median 0.78444 0.85245 NaN 1 0 Median 0.9802 0.91869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8541400 4302000 4239400 1432800 627860 804930 7108600 3674100 3434500 0 0 0 0 0 0 0 0 0 0 0 0 350 2520 360 1514;1515 1507;1508;1509 1509 3 AARPITLGIDLGTTSVK ______________________________ RPITLGIDLGTTSVKAALLRAAPDDPSGFA M A A V K A 2 1 0 1 0 0 0 2 0 2 2 1 0 0 1 1 3 0 0 1 0 0 17 1 1711.9832 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 2 18 TRPV1;SHPK Sedoheptulokinase yes no 2 9.859E-06 63.76 By MS/MS 1 0.93306 0.93228 NaN 1 Median 0.93306 0.93228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3903200 2022900 1880300 3903200 2022900 1880300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 351 219 361 1516 1510 1510 1 AASAAAAELQASGGPR ______________________________ ASAAAAELQASGGPRHPVCLLVLGMAGSGK M A A P R H 7 1 0 0 0 1 1 2 0 0 1 0 0 0 1 2 0 0 0 0 0 0 16 0 1426.7165 Q9HCN4;F8WD09 Q9HCN4 2 17 GPN1 GPN-loop GTPase 1 yes no 2 6.3658E-15 128.67 By MS/MS 1 0.69532 0.694 NaN 1 Median 0.69532 0.694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15435000 9387900 6047600 15435000 9387900 6047600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 352 4031 362 1517 1511 1511 1 AASAAAASAAAASAASGSPGPGEGSAGGEK ______________________________ SGSPGPGEGSAGGEKRSTAPSAAASASASA M A A E K R 13 0 0 0 0 0 2 6 0 0 0 1 0 0 2 6 0 0 0 0 0 0 30 0 2386.0997 Q13263 Q13263 2 31 TRIM28 Transcription intermediary factor 1-beta yes yes 3 2.2071E-59 144.44 By MS/MS By matching By MS/MS By matching By matching 1 2 1 2 1 0.70441 0.60621 9.2183 7 Median 0.60598 0.58337 NaN 1 0 Median 0.71796 0.62787 4.9658 2 0 Median 0.53694 0.57969 NaN 1 1 Median 0.77831 0.69482 4.1364 2 0 Median 0.52639 0.55484 NaN 1 0 Median NaN NaN NaN 0 0 Median 60220000 35671000 24548000 25035000 15249000 9786300 2265900 1245100 1020800 28936000 16668000 12268000 1087700 593390 494350 2894800 1916200 978600 0 0 0 353 2802 363 1518;1519;1520;1521;1522;1523;1524 1512;1513;1514 1512 3 AASAAAASAAAASAASGSPGPGEGSAGGEKR ______________________________ GSPGPGEGSAGGEKRSTAPSAAASASASAA M A A K R S 13 1 0 0 0 0 2 6 0 0 0 1 0 0 2 6 0 0 0 0 0 0 31 1 2542.2008 Q13263 Q13263 2 32 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 6.2797E-163 265.07 By MS/MS By matching By MS/MS By matching By MS/MS 7 2 6 3 6 0.72496 0.76096 16.546 24 Median 0.67587 0.70422 17.544 7 0 Median 0.80464 0.78492 13.29 2 0 Median 0.73051 0.79839 5.0246 6 0 Median 1.0029 0.96376 19.364 3 0 Median 0.64684 0.73142 5.8523 6 0 Median NaN NaN NaN 0 0 Median 764940000 424610000 340340000 376340000 212590000 163750000 3161800 1661500 1500200 294730000 158560000 136170000 3208000 1525800 1682200 87510000 50272000 37238000 0 0 0 354 2802 364 1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548 1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535;1536;1537;1538;1539;1540;1541;1542;1543;1544 1520 30 AASAAFQENVGR LVIAAVFDRDINCRRAASAAFQENVGRQGT CRRAASAAFQENVGRQGTFPHGIDILTTAD R A A G R Q 4 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 12 0 1219.5945 Q9BTW9;J3KR97;I3L0V3 Q9BTW9 509 520 TBCD Tubulin-specific chaperone D yes no 2 1.5018E-07 123.86 By MS/MS By MS/MS 1 1 1.0919 0.98089 27.363 2 Median 0.83596 0.80833 NaN 1 0 Median 1.4261 1.1903 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17494000 7288200 10206000 4596200 2220000 2376200 12898000 5068200 7830100 0 0 0 0 0 0 0 0 0 0 0 0 355 1324 365 1549;1550 1545;1546 1546 2 AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK FAKRDKKKKKERSNRAASAAGAAGSAGGSS GTASAGAAGPGAATKAVTKDEDEWKELEQK R A A T K A 19 1 0 1 0 0 0 17 0 0 0 1 0 0 2 5 3 0 0 0 0 0 49 1 3668.7123 Q9UKY7 Q9UKY7 28 76 CDV3 Protein CDV3 homolog yes yes 3;4;5 7.1759E-26 69.658 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 3 6 0.69786 0.70182 25.062 19 Median 0.737 0.76228 9.7284 6 0 Median 0.69783 0.63699 16.738 4 0 Median 0.65075 0.70789 20.388 3 0 Median 0.67066 0.60017 38.001 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118570000 61261000 57313000 79514000 40051000 39463000 12229000 6284900 5943900 9935500 5826700 4108800 16895000 9098200 7797300 0 0 0 0 0 0 356 4318 366 1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569 1547;1548;1549;1550;1551;1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571;1572;1573;1574;1575;1576;1577;1578;1579 1567 33 AASAAREELKEAR AKLDSAKLSSDQNDKAASAAREELKEARMR DKAASAAREELKEARMRLESLSYQLSGLQK K A A A R M 5 2 0 0 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 13 2 1400.7372 Q03252 Q03252 299 311 LMNB2 Lamin-B2 yes yes 3 0.035901 20.096 By MS/MS 2 0.61306 0.69465 57.645 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61306 0.69465 57.645 2 0 Median NaN NaN NaN 0 0 Median 1380500 765930 614570 0 0 0 0 0 0 0 0 0 0 0 0 1380500 765930 614570 0 0 0 357 2709 367 1570;1571 1580 1580 1 AASAATAAPTATPAAQESGTIPK RPREALSTNECKARRAASAATAAPTATPAA PTATPAAQESGTIPKKRQEVMKWNGWGYND R A A P K K 9 0 0 0 0 1 1 1 0 1 0 1 0 0 3 2 4 0 0 0 0 0 23 0 2082.0593 O00116;B8ZZ81 O00116 63 85 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2;3 3.0473E-11 56.29 By MS/MS By MS/MS 2 2 0.70587 0.63912 14.459 4 Median 0.5718 0.54944 12.729 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79795 0.68166 0.46116 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11059000 6342300 4716200 7387300 4290500 3096900 0 0 0 0 0 0 3671200 2051900 1619300 0 0 0 0 0 0 358 1439 368 1572;1573;1574;1575 1581;1582 1582 2 AASADSTTEGTPADGFTVLSTK KGARKSKKKQGEVSKAASADSTTEGTPADG TEGTPADGFTVLSTKSLFLGQKLNLIHSEI K A A T K S 4 0 0 2 0 0 1 2 0 0 1 1 0 1 1 3 5 0 0 1 0 0 22 0 2126.0015 O75367 O75367 168 189 H2AFY Core histone macro-H2A.1 yes yes 2;3 2.0704E-26 150.59 By matching By MS/MS By matching 1 16 7 0.85342 0.84713 17.212 24 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9931 1.6445 NaN 1 0 Median 0.82851 0.83269 9.3616 16 0 Median 1.1702 0.98904 4.273 7 0 Median 678600000 359210000 319390000 0 0 0 0 0 0 0 0 0 804410 287050 517360 666900000 353990000 312910000 10894000 4934600 5959300 359 1662 369 1576;1577;1578;1579;1580;1581;1582;1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599 1583;1584;1585;1586;1587;1588;1589;1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615;1616;1617;1618;1619;1620 1606 37 AASAFFTYVSLSQEGR VDADPVVDSSQKRYRAASAFFTYVSLSQEG ASAFFTYVSLSQEGRSLPVPQLVPETEDEK R A A G R S 3 1 0 0 0 1 1 1 0 0 1 0 0 2 0 3 1 0 1 1 0 0 16 0 1732.842 O00154 O00154 325 340 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes yes 2 1.32E-06 91.03 By MS/MS By MS/MS By MS/MS 3 1 1 1.1541 0.98589 67.715 5 Median 1.2221 1.2124 82.033 3 1 Plateau 1.1541 0.98589 NaN 1 1 Median 1.3324 1.4491 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15191000 7250800 7940300 11079000 5493700 5585100 1786100 745190 1040900 2326200 1011900 1314300 0 0 0 0 0 0 0 0 0 360 1443 370 1600;1601;1602;1603;1604 1621;1622;1623;1624;1625 1623 5 AASAGQEPLHNEELAGAGR LLVGFILFLTRSRGRAASAGQEPLHNEELA GQEPLHNEELAGAGRVAQPGPLEPEEPRAG R A A G R V 5 1 1 0 0 1 3 3 1 0 2 0 0 0 1 1 0 0 0 0 0 0 19 0 1876.9028 Q96HY6;A0A0A0MRX2 Q96HY6 28 46 DDRGK1 DDRGK domain-containing protein 1 yes no 3 1.2398E-07 61.648 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.97328 0.94545 21.349 6 Median 0.85492 0.84952 NaN 1 0 Median 1.0552 0.91627 NaN 1 0 Median 0.89107 0.93499 6.0056 2 0 Median 1.2169 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7827 1.5276 NaN 1 1 Median 20937000 10187000 10750000 4298000 2121200 2176800 4633700 2117100 2516700 8453500 4322500 4131000 2553900 1227500 1326400 0 0 0 997510 398230 599270 361 3672 371 1605;1606;1607;1608;1609;1610 1626;1627;1628;1629;1630;1631;1632;1633;1634 1629 9 AASAYAVGDVK GQYFGELALVTNKPRAASAYAVGDVKCLVM NKPRAASAYAVGDVKCLVMDVQAFERLLGP R A A V K C 4 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 2 0 0 11 0 1050.5346 P13861;H7C330 P13861 348 358 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.0034745 72.643 By MS/MS By MS/MS 1 1 1.8268 1.6216 27.775 2 Median 1.4337 1.3324 NaN 1 1 Median 2.3276 1.9735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20879000 4620900 16258000 10729000 2443400 8286000 10149000 2177500 7971900 0 0 0 0 0 0 0 0 0 0 0 0 362 1998 372 1611;1612 1635;1636 1636 2 AASCVLLHTGQK ______________________________ ______________________________ M A A Q K M 2 0 0 0 1 1 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1283.6656 P14550;V9GYG2;V9GYP9;Q5T621 P14550 2 13 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes no 2 0.0042472 44.309 By MS/MS 1 1.1281 0.95014 NaN 1 Median NaN NaN NaN 0 0 Median 1.1281 0.95014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2762800 1354100 1408800 0 0 0 2762800 1354100 1408800 0 0 0 0 0 0 0 0 0 0 0 0 363 2004 373 1613 1637 1637 1 AASDIAMTELPPTHPIR NDRKEAAENSLVAYKAASDIAMTELPPTHP SDIAMTELPPTHPIRLGLALNFSVFYYEIL K A A I R L 3 1 0 1 0 0 1 0 1 2 1 0 1 0 3 1 2 0 0 0 0 0 17 0 1818.9298 P62258;K7EM20 P62258 154 170 YWHAE 14-3-3 protein epsilon yes no 2;3 1.5179E-48 174.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 11 6 1 0.67695 0.61626 19.535 33 Median 0.64544 0.60164 33.038 8 3 Median 0.73481 0.61682 3.7948 7 0 Median 0.63271 0.61527 13.215 11 1 Median 0.76154 0.63351 19.495 6 0 Median 0.76481 0.7704 NaN 1 1 Median NaN NaN NaN 0 0 Median 852260000 507930000 344330000 542030000 330870000 211160000 121470000 67529000 53943000 154160000 88880000 65281000 18048000 10266000 7781800 16554000 10386000 6167600 0 0 0 364 2576 374;375 1614;1615;1616;1617;1618;1619;1620;1621;1622;1623;1624;1625;1626;1627;1628;1629;1630;1631;1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645;1646 1638;1639;1640;1641;1642;1643;1644;1645;1646;1647;1648;1649;1650;1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700 1664 1245 63 AASDIWKPVLSIDTEPR ETRKPGPSGPSESPKAASDIWKPVLSIDTE SDIWKPVLSIDTEPRKPALFPEPAKTAPPA K A A P R K 2 1 0 2 0 0 1 0 0 2 1 1 0 0 2 2 1 1 0 1 0 0 17 1 1896.9945 Q96JM3 Q96JM3 510 526 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.032578 24.41 By MS/MS 1 0.98906 1.0877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98906 1.0877 NaN 1 1 Median NaN NaN NaN 0 0 Median 5996400 3082100 2914300 0 0 0 0 0 0 0 0 0 0 0 0 5996400 3082100 2914300 0 0 0 365 3687 376 1647 1701 1701 1 AASEAAVVSSPSLK ______________________________ MAASEAAVVSSPSLKTDTSPVLETAGTVAA M A A L K T 4 0 0 0 0 0 1 0 0 0 1 1 0 0 1 4 0 0 0 2 0 0 14 0 1315.6983 Q8WWH5 Q8WWH5 2 15 TRUB1 Probable tRNA pseudouridine synthase 1 yes yes 2 1.1198E-07 150.04 By MS/MS By MS/MS 1 1 1.2726 1.2772 67.656 2 Median 0.85104 0.79159 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.903 2.0608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12781000 6369700 6411800 9730100 5029300 4700800 0 0 0 3051400 1340400 1711000 0 0 0 0 0 0 0 0 0 366 3508 377 1648;1649 1702;1703;1704 1702 3 AASGFNAMEDAQTLR ______________________________ AASGFNAMEDAQTLRKAMKGLGTDEDAIIS K A A L R K 4 1 1 1 0 1 1 1 0 0 1 0 1 1 0 1 1 0 0 0 0 0 15 0 1580.7253 P09525;Q6P452;B4E1S2 P09525 10 24 ANXA4 Annexin A4;Annexin yes no 2 1.057E-09 106.49 By MS/MS By matching By matching 1 2 1 0.97917 0.87427 18.501 4 Median 0.89179 0.8344 NaN 1 0 Median 1.2151 1.0571 22.388 2 0 Median 0.86456 0.84709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25981000 12841000 13140000 20922000 10192000 10730000 2695900 1258900 1437000 2363500 1390100 973340 0 0 0 0 0 0 0 0 0 367 1917 378 1650;1651;1652;1653 1705 1705 1 AASGFNAMEDAQTLRK ______________________________ ASGFNAMEDAQTLRKAMKGLGTDEDAIISV K A A R K A 4 1 1 1 0 1 1 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 16 1 1708.8203 P09525;Q6P452;B4E1S2 P09525 10 25 ANXA4 Annexin A4;Annexin yes no 2;3 7.8534E-05 59.57 By MS/MS By MS/MS By matching 2 1 1 1.1311 1.0797 14.658 4 Median 0.98859 0.99579 3.041 2 0 Median 1.2622 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.433 1.3523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39304000 19092000 20212000 36971000 18034000 18937000 1920600 898150 1022400 0 0 0 412790 160300 252490 0 0 0 0 0 0 368 1917 379 1654;1655;1656;1657 1706;1707;1708;1709 1706 4 AASIFGGAKPVDTAAR PKEDDSSASTSQSTRAASIFGGAKPVDTAA ASIFGGAKPVDTAAREREVEERLQKEQEKL R A A A R E 5 1 0 1 0 0 0 2 0 1 0 1 0 1 1 1 1 0 0 1 0 0 16 1 1530.8154 E7EX17;P23588;F8VX11 E7EX17 357 372 EIF4B Eukaryotic translation initiation factor 4B yes no 2;3 1.6501E-13 121.08 By MS/MS By matching By MS/MS By MS/MS 6 3 2 6 0.91885 0.91746 18.423 17 Median 0.90045 0.91443 24.167 6 2 Median 0.91885 0.92236 10 3 0 Median 0.68899 0.74966 21.527 2 0 Median 1.0008 0.94956 11.711 6 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 144990000 74982000 70003000 87484000 46210000 41274000 8153700 5097000 3056700 30279000 14722000 15556000 19069000 8952400 10117000 0 0 0 0 0 0 369 904 380 1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674 1710;1711;1712;1713;1714;1715;1716;1717;1718;1719;1720;1721;1722;1723;1724 1714 14 AASITSEVFNK TIAVKEDGELNLMKKAASITSEVFNKFFKE LMKKAASITSEVFNKFFKERVMEIVDADEK K A A N K F 2 0 1 0 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1165.5979 Q9Y5B9 Q9Y5B9 186 196 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0012178 82.287 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 4 1.4431 1.2973 41.976 8 Median 0.71723 0.71772 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1399 1.2228 NaN 1 0 Median 3.1224 2.6843 NaN 1 1 Median 1.4363 1.472 NaN 1 0 Median 1.5346 1.2973 33.338 4 2 Median 38757000 17636000 21121000 9084700 4760000 4324700 0 0 0 6953400 2998400 3955000 3665000 762610 2902300 4539500 2017300 2522200 14514000 7097700 7416500 370 4456 381 1675;1676;1677;1678;1679;1680;1681;1682 1725;1726;1727;1728;1729;1730;1731;1732;1733 1730 9 AASIYSSWAEEQR VSQDLLDLMHTLHTRAASIYSSWAEEQRHL TRAASIYSSWAEEQRHLETGGQKIEADSRT R A A Q R H 3 1 0 0 0 1 2 0 0 1 0 0 0 0 0 3 0 1 1 0 0 0 13 0 1496.6896 Q92538 Q92538 1509 1521 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.0046736 39.785 By MS/MS By matching 1 1 1.3345 1.1958 11.272 2 Median 1.3462 1.295 NaN 1 0 Median 1.3228 1.1042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5572100 2556700 3015500 4370900 2078100 2292800 1201300 478600 722650 0 0 0 0 0 0 0 0 0 0 0 0 371 3533 382 1683;1684 1734 1734 1 AASLEYDYETIR GGPTLQCPPPSSPEKAASLEYDYETIRNID PEKAASLEYDYETIRNIDCYSTDFCVRVRD K A A I R N 2 1 0 1 0 0 2 0 0 1 1 0 0 0 0 1 1 0 2 0 0 0 12 0 1429.6725 Q96N66 Q96N66 289 300 MBOAT7 Lysophospholipid acyltransferase 7 yes yes 2 3.3934E-06 136.33 By MS/MS By MS/MS 2 1 1.1033 0.89531 46.607 3 Median 1.3088 1.2515 59.97 2 1 Median 1.1033 0.89531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43280000 20036000 23244000 32547000 15099000 17447000 10733000 4936700 5796400 0 0 0 0 0 0 0 0 0 0 0 0 372 3706 383 1685;1686;1687 1735;1736;1737;1738;1739 1738 5 AASLHWTSER VQHIHLSPSHHSGSKAASLHWTSERVVSVL HSGSKAASLHWTSERVVSVLLLGLLPAAYL K A A E R V 2 1 0 0 0 0 1 0 1 0 1 0 0 0 0 2 1 1 0 0 0 0 10 0 1156.5625 O14521;H0YD96;H0YD41;G3V173;E9PK73;H3BRW5 O14521 61 70 SDHD Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial yes no 2 0.00015684 130.66 By MS/MS By MS/MS 1 2 1.5839 1.2811 14.354 3 Median 1.099 1.0667 NaN 1 0 Median 1.6241 1.3467 7.0628 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30560000 12995000 17565000 17759000 8346400 9412700 12801000 4648300 8152600 0 0 0 0 0 0 0 0 0 0 0 0 373 1481 384 1688;1689;1690 1740;1741;1742;1743;1744;1745 1742 6 AASLVGKK ______________________________ ______________________________ M A A K K I 2 0 0 0 0 0 0 1 0 0 1 2 0 0 0 1 0 0 0 1 0 0 8 1 772.48069 Q9BY32 Q9BY32 2 9 ITPA Inosine triphosphate pyrophosphatase yes yes 2 0.0068027 58.917 By MS/MS By matching 1 1 1.0913 1.0224 29.994 2 Median 1.2417 1.2639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95914 0.827 NaN 1 0 Median 4500600 2144400 2356200 4080800 1932800 2148000 0 0 0 0 0 0 0 0 0 0 0 0 419830 211630 208200 374 3884 385 1691;1692 1746 1746 1 AASNMALGK AIELDKKYIKGYYRRAASNMALGKFRAALR KGYYRRAASNMALGKFRAALRDYETVVKVK R A A G K F 3 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 9 0 861.43784 P53041;H0YDU8 P53041 103 111 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 2 0.012368 46.426 By MS/MS 2 1.2447 1.1246 0.83 2 Median NaN NaN NaN 0 0 Median 1.2447 1.1246 0.83 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1566900 662440 904430 0 0 0 1566900 662440 904430 0 0 0 0 0 0 0 0 0 0 0 0 375 1177 386 1693;1694 1747 1747 1 AASQAVEEMR ______________________________ ______________________________ M A A M R S 3 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 10 0 1090.5077 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8Y8D6 O15160 2 11 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 1.0716E-05 152.34 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1566 1.1758 21.577 6 Median 1.2553 1.2441 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1042 1.2069 5.6749 2 0 Median 1.0591 0.92443 36.004 2 0 Median NaN NaN NaN 0 0 Median 1.1568 0.99334 NaN 1 0 Median 93668000 45865000 47802000 5450200 2309600 3140600 0 0 0 75412000 37997000 37415000 3833700 1677800 2156000 0 0 0 8972200 3881400 5090800 376 1528 387;388 1695;1696;1697;1698;1699;1700 1748;1749;1750;1751;1752;1753 1750 496 6 AASSLLANLWQYNK IKKKRDSPDSEKSSRAASSLLANLWQYNKL RAASSLLANLWQYNKLHRDFRAKGYRKEDF R A A N K L 3 0 2 0 0 1 0 0 0 0 3 1 0 0 0 2 0 1 1 0 0 0 14 0 1577.8202 Q9Y446;H0YEY5 Q9Y446 766 779 PKP3 Plakophilin-3 yes no 2 0.0019049 45.997 By MS/MS By matching By matching By matching 2 2 2 3 0.95548 0.95606 54.742 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7959 0.81978 11.772 2 0 Median 1.3413 1.1784 18.808 2 0 Median 0.43369 0.45734 104.28 2 0 Median 1.3461 1.1283 26.64 3 0 Median 8602500 4449800 4152700 0 0 0 0 0 0 4474000 2497900 1976000 296820 134100 162720 965540 668740 296800 2866200 1149000 1717100 377 4437 389 1701;1702;1703;1704;1705;1706;1707;1708;1709 1754 1754 1 AASTDMAGLEESFRK ______________________________ AASTDMAGLEESFRKFAIHGDPKASGQEMN M A A R K F 3 1 0 1 0 0 2 1 0 0 1 1 1 1 0 2 1 0 0 0 0 0 15 1 1611.7563 Q9BW30 Q9BW30 2 16 TPPP3 Tubulin polymerization-promoting protein family member 3 yes yes 2 2.9574E-06 87.363 By MS/MS By matching 1 2 0.82168 0.85458 51.485 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82168 0.85458 NaN 1 0 Median 0.73663 0.67643 70.264 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7229000 3962300 3266600 0 0 0 0 0 0 6980200 3832500 3147600 248800 129810 118990 0 0 0 0 0 0 378 3862 390 1710;1711;1712 1755 1755 1 AASVHTVGEDTEETPHR LIGPLSHSILTEAIKAASVHTVGEDTEETP SVHTVGEDTEETPHRWWIETCKKPDSVSLH K A A H R W 2 1 0 1 0 0 3 1 2 0 0 0 0 0 1 1 3 0 0 2 0 0 17 0 1834.8446 Q99575 Q99575 449 465 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 3 7.9177E-11 99.451 By matching By MS/MS By matching 1 1 1 1.1361 0.97088 39.355 3 Plateau 0.50943 0.51444 NaN 1 0 Median 1.1361 0.97088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99611 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median 4282500 1937200 2345300 613180 349880 263300 2947400 1230300 1717200 0 0 0 0 0 0 721940 357090 364860 0 0 0 379 3754 391 1713;1714;1715 1756;1757 1756 2 AASVRPVLDIYSASGMPLASLLWK GGPIALLRNPWRKEKAASVRPVLDIYSASG IYSASGMPLASLLWKSGPVVSLGWSAEEEL K A A W K S 4 1 0 1 0 0 0 1 0 1 4 1 1 0 2 4 0 1 1 2 0 0 24 1 2544.3774 Q9H269 Q9H269 59 82 VPS16 Vacuolar protein sorting-associated protein 16 homolog yes yes 3 0.0065064 25.803 By MS/MS 1 1.1943 1.1977 NaN 1 Median NaN NaN NaN 0 0 Median 1.1943 1.1977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1178200 429010 749160 0 0 0 1178200 429010 749160 0 0 0 0 0 0 0 0 0 0 0 0 380 3940 392 1716 1758 1758 1 AASVVQPQPLVVVK SPPQQNVQPKKQELRAASVVQPQPLVVVKE RAASVVQPQPLVVVKEEKIHSPIIRSEPFS R A A V K E 2 0 0 0 0 2 0 0 0 0 1 1 0 0 2 1 0 0 0 5 0 0 14 0 1433.8606 O60885 O60885 1098 1111 BRD4 Bromodomain-containing protein 4 yes yes 2 0.00049486 68.847 By MS/MS By matching By matching 1 1 1 0.89211 0.80154 5.3191 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66654 0.73561 NaN 1 0 Median 0.89211 0.81082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9305 0.80154 NaN 1 0 Median 13370000 8000100 5369700 0 0 0 0 0 0 11467000 6989300 4477500 1404600 747660 656980 0 0 0 498300 263080 235220 381 1638 393 1717;1718;1719 1759;1760 1760 2 AASVVQPQPLVVVKEEK SPPQQNVQPKKQELRAASVVQPQPLVVVKE SVVQPQPLVVVKEEKIHSPIIRSEPFSPSL R A A E K I 2 0 0 0 0 2 2 0 0 0 1 2 0 0 2 1 0 0 0 5 0 0 17 1 1820.0407 O60885 O60885 1098 1114 BRD4 Bromodomain-containing protein 4 yes yes 3 9.8227E-06 53.255 By MS/MS By matching By matching 1 1 1 0.63344 0.72409 17.546 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63344 0.73708 NaN 1 0 Median 0.77364 0.72409 NaN 1 0 Median 0.50522 0.53931 NaN 1 0 Median NaN NaN NaN 0 0 Median 56177000 34408000 21769000 0 0 0 0 0 0 51640000 31493000 20147000 1489600 836410 653230 3046700 2078300 968420 0 0 0 382 1638 394 1720;1721;1722 1761;1762 1762 2 AATAAADFTAK KGAVWGATLNKDATKAATAAADFTAKVWDA DATKAATAAADFTAKVWDAVSGDELMTLAH K A A A K V 6 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1036.5189 Q9Y3F4 Q9Y3F4 74 84 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 6.787E-08 132.01 By MS/MS By MS/MS By MS/MS 1 2 1 1.2974 1.1507 60.637 4 Median 1.1397 1.0486 NaN 1 0 Median 1.1915 1.0168 30.637 2 1 Median 3.172 3.2757 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84266000 32043000 52223000 36957000 15770000 21187000 27638000 12660000 14978000 19672000 3612600 16059000 0 0 0 0 0 0 0 0 0 383 4429 395 1723;1724;1725;1726 1763;1764;1765;1766 1766 4 AATALKDVVK PWCGHCQRLTPEWKKAATALKDVVKVGAVD PEWKKAATALKDVVKVGAVDADKHHSLGGQ K A A V K V 3 0 0 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 10 1 1014.6073 Q15084 Q15084 68 77 PDIA6 Protein disulfide-isomerase A6 yes yes 2 0.0021038 120.99 By MS/MS By MS/MS By matching 2 2 1 1.2217 1.1569 7.5045 5 Median 1.2152 1.1499 1.7138 2 0 Median 1.3017 1.1755 14.741 2 0 Median NaN NaN NaN 0 0 Median 1.218 1.1569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16504000 7439000 9065000 10377000 4533800 5843200 4635200 2180600 2454600 0 0 0 1491800 724570 767240 0 0 0 0 0 0 384 2927 396 1727;1728;1729;1730;1731 1767;1768 1767 2 AATALLEAGLAR ______________________________ ______________________________ M A A A R V 5 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 12 0 1155.6612 Q8WUK0;E9PQM0 Q8WUK0 2 13 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes no 2 7.2899E-06 120.12 By MS/MS By matching By MS/MS By matching 3 2 2 2 1.1736 1.1278 18.66 9 Median 0.88957 0.8785 13.414 3 0 Median 1.6563 1.3849 1.1396 2 0 Median 1.1728 1.1241 0.46545 2 0 Median 1.6081 1.3209 7.4013 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22735000 11069000 11666000 7434800 3901400 3533300 1742500 676550 1065900 12201000 5938800 6261700 1356700 552100 804640 0 0 0 0 0 0 385 3491 397;398 1732;1733;1734;1735;1736;1737;1738;1739;1740 1769;1770;1771;1772;1773 1772 5 AATASAGAGGIDGKPR ______________________________ ATASAGAGGIDGKPRTSPKMGATVFVQPLD M A A P R T 5 1 0 1 0 0 0 4 0 1 0 1 0 0 1 1 1 0 0 0 0 0 16 1 1398.7215 I3L1P8;Q02978 I3L1P8 2 17 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 3.244E-36 207.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 1 1 0.9761 1.0314 26.603 13 Median 0.88871 0.90467 20.552 6 2 Median 1.3657 1.2388 9.0339 4 1 Median 0.79883 0.82886 NaN 1 0 Median 1.7169 1.6202 NaN 1 0 Median 0.9761 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 146840000 71735000 75106000 109570000 56550000 53021000 27120000 10622000 16498000 5526000 2738300 2787800 1282700 441470 841260 3341100 1383000 1958100 0 0 0 386 1277 399 1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753 1774;1775;1776;1777;1778;1779;1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793;1794;1795 1778 22 AATENIPVVR LLNNVHLSHPVYVRRAATENIPVVRRPDRK VYVRRAATENIPVVRRPDRKDLLGYLNGEA R A A V R R 2 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 10 0 1068.5928 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640 Q6P1J9 78 87 CDC73 Parafibromin yes no 2 0.00083236 70.919 By MS/MS By MS/MS By MS/MS 1 1 1 0.83801 0.87004 30.528 3 Plateau 0.49556 0.50185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83801 0.87004 NaN 1 0 Median 0.99554 0.83098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7550400 4012700 3537600 1752700 1072600 680090 0 0 0 4033400 2093000 1940400 1764300 847190 917100 0 0 0 0 0 0 387 3150 400 1754;1755;1756 1796;1797;1798;1799 1798 4 AATEVSKELSESQVHMMAAAVADGTR EAQQAQKSAEQPEQKAATEVSKELSESQVH SQVHMMAAAVADGTRAATIIEERSPSWISA K A A T R A 6 1 0 1 0 1 3 1 1 0 1 1 2 0 0 3 2 0 0 3 0 0 26 1 2688.2847 Q02952 Q02952 876 901 AKAP12 A-kinase anchor protein 12 yes yes 3 1.3343E-08 44.711 By MS/MS 1 1.4977 1.5582 NaN 1 Median 1.4977 1.5582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13048000 4388700 8659000 13048000 4388700 8659000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 388 2705 401 1757 1800 1800 1 AATGYRDPATGDTIPLFQAMQK LVNEELRERLLKAERAATGYRDPATGDTIP PATGDTIPLFQAMQKQLIEKAEALRLLEVQ R A A Q K Q 4 1 0 2 0 2 0 2 0 1 1 1 1 1 2 0 3 0 1 0 0 0 22 1 2351.158 P58107;A0A075B730 P58107 1974 1995 EPPK1 Epiplakin yes no 2;3 1.1756E-14 91.64 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.91987 0.95788 17.396 5 Median 0.91346 0.95466 0.4756 2 0 Median 0.83394 0.77458 NaN 1 0 Median 1.0593 1.2227 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9794 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median 68303000 34212000 34091000 57331000 28869000 28463000 7858300 3842800 4015600 1144800 578380 566460 0 0 0 1968700 922640 1046100 0 0 0 389 2520 402 1758;1759;1760;1761;1762 1801;1802;1803;1804;1805;1806 1803 6 AATIIEER SQVHMMAAAVADGTRAATIIEERSPSWISA AVADGTRAATIIEERSPSWISASVTEPLEQ R A A E R S 2 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 8 0 901.4869 Q02952 Q02952 902 909 AKAP12 A-kinase anchor protein 12 yes yes 2 0.010149 77.282 By MS/MS 1 0.75821 0.64331 NaN 1 Median NaN NaN NaN 0 0 Median 0.75821 0.64331 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3098100 1741200 1356900 0 0 0 3098100 1741200 1356900 0 0 0 0 0 0 0 0 0 0 0 0 390 2705 403 1763 1807 1807 1 AATIPVSQISTIAGSK SKDSQAKKIKMDLQKAATIPVSQISTIAGS ATIPVSQISTIAGSKLKEIFDKIHSLLSGK K A A S K L 3 0 0 0 0 1 0 1 0 3 0 1 0 0 1 3 2 0 0 1 0 0 16 0 1542.8617 Q53GS7 Q53GS7 425 440 GLE1 Nucleoporin GLE1 yes yes 2 8.4051E-05 74.76 By MS/MS 1 1.163 1.2358 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.163 1.2358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4241800 2378700 1863100 0 0 0 0 0 0 4241800 2378700 1863100 0 0 0 0 0 0 0 0 0 391 3031 404 1764 1808;1809 1808 2 AATITPFR APVKQKTVAELEAEKAATITPFRKTMSTAS AELEAEKAATITPFRKTMSTASAYTAGLTG K A A F R K 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 8 0 875.4865 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 463 470 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0028856 130.77 By MS/MS By matching By matching By matching 1 1 1 4 1.2688 1.0262 15.239 7 Median NaN NaN NaN 0 0 Median 1.2688 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6192 1.3682 NaN 1 0 Median 0.84372 0.90158 NaN 1 0 Median 1.2599 1.0039 12.167 4 0 Median 34068000 14319000 19749000 0 0 0 11935000 4896000 7038500 0 0 0 209330 85284 124050 470780 256170 214610 21453000 9081200 12372000 392 2814 405 1765;1766;1767;1768;1769;1770;1771 1810;1811 1811 2 AATITPFRK APVKQKTVAELEAEKAATITPFRKTMSTAS ELEAEKAATITPFRKTMSTASAYTAGLTGI K A A R K T 2 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 2 0 0 0 0 0 9 1 1003.5815 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 463 471 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.061477 41.029 By MS/MS 1 0.73278 0.74304 NaN 1 Median 0.73278 0.74304 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1093300 663440 429840 1093300 663440 429840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 393 2814 406 1772 1812 1812 1 AATIVATSEGSLWGLDR RGSFGELALMYNTPRAATIVATSEGSLWGL TIVATSEGSLWGLDRVTFRRIIVKNNAKKR R A A D R V 3 1 0 1 0 0 1 2 0 1 2 0 0 0 0 2 2 1 0 1 0 0 17 0 1745.8948 P13861;H7C1L0 P13861 218 234 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 9.2648E-12 95.018 By MS/MS By MS/MS By matching 1 1 1 1.0386 0.86786 12.592 3 Median 1.0437 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81186 0.81791 NaN 1 1 Median 1.0386 0.86786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5512000 2922200 2589800 2413500 1249300 1164200 0 0 0 2870800 1571900 1298900 227630 100990 126640 0 0 0 0 0 0 394 1998 407 1773;1774;1775 1813;1814;1815 1815 3 AATLAQELEK QVKKYHRLKEEASKRAATLAQELEKFNRDQ EASKRAATLAQELEKFNRDQKADQDRLDLE R A A E K F 3 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1072.5764 Q14683;G8JLG1 Q14683 386 395 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00035294 124.23 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.1825 1.0177 9.0793 6 Median 1.1678 1.0853 NaN 1 0 Median 1.2297 1.0509 NaN 1 0 Median 0.85045 0.90548 NaN 1 0 Median 1.3058 1.1758 NaN 1 0 Median 0.93984 0.98542 NaN 1 0 Median 1.1973 0.98476 NaN 1 0 Median 92337000 45757000 46580000 5960300 2788100 3172200 1085300 467690 617590 29305000 15021000 14285000 6240700 2877100 3363600 46180000 23115000 23065000 3565400 1488500 2076900 395 2889 408 1776;1777;1778;1779;1780;1781 1816;1817;1818;1819;1820;1821 1817 6 AATLAQELEKFNR QVKKYHRLKEEASKRAATLAQELEKFNRDQ KRAATLAQELEKFNRDQKADQDRLDLEERK R A A N R D 3 1 1 0 0 1 2 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 1 1489.7889 Q14683;G8JLG1 Q14683 386 398 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.0026374 37.156 By MS/MS 1 1.6954 1.9213 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6954 1.9213 NaN 1 0 Median NaN NaN NaN 0 0 Median 2750200 1167400 1582800 0 0 0 0 0 0 0 0 0 0 0 0 2750200 1167400 1582800 0 0 0 396 2889 409 1782 1822 1822 1 AATLMMLGR AIDMCPKNASYYGNRAATLMMLGRFREALG SYYGNRAATLMMLGRFREALGDAQQSVRLD R A A G R F 2 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 1 0 0 0 0 0 9 0 962.50414 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7EK03;K7ER44;K7ELJ8;K7EJE9 Q99615 69 77 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0019502 75.854 By MS/MS By MS/MS By MS/MS 1 1 1 1.4818 1.4905 20.367 3 Plateau NaN NaN NaN 0 0 Median 1.2936 1.1192 NaN 1 0 Median 1.486 1.5224 NaN 1 0 Median 1.1982 1.0359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8969100 3759800 5209300 0 0 0 2029700 842390 1187400 5967300 2385100 3582200 972020 532280 439750 0 0 0 0 0 0 397 3759 410 1783;1784;1785 1823;1824;1825;1826 1823 4 AATLSTLAGQPLLER IRERFGPLVEQGQSRAATLSTLAGQPLLER AATLSTLAGQPLLERAEAWRQKLHGRLEEV R A A E R A 3 1 0 0 0 1 1 1 0 0 4 0 0 0 1 1 2 0 0 0 0 0 15 0 1539.8621 CON__Q03247 CON__Q03247 209 223 yes yes 2 3.4129E-08 104.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 0.031275 0.030108 128.75 5 Median 0.031275 0.030108 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.087552 0.081778 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.021314 0.021382 172.92 3 2 Median NaN NaN NaN 0 0 Median 37021000 36435000 586340 2686400 2644200 42143 854670 854670 0 4475400 4449700 25745 0 0 0 29005000 28486000 518450 0 0 0 + 398 767 411 1786;1787;1788;1789;1790;1791;1792 1827;1828;1829;1830;1831;1832;1833;1834 1831 8 AATMTAAGHHAEVVVDPEDER DGSDDEDEEWPTLEKAATMTAAGHHAEVVV AGHHAEVVVDPEDERAIEMFMNKNPPARRT K A A E R A 5 1 0 2 0 0 3 1 2 0 0 0 1 0 1 0 2 0 0 3 0 0 21 0 2205.012 Q13895;F8WBL2 Q13895 111 131 BYSL Bystin yes no 3;4 4.4075E-09 56.529 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.83795 0.72317 28.602 5 Median NaN NaN NaN 0 0 Median 0.83795 0.72088 NaN 1 0 Median 1.1061 1.1081 NaN 1 0 Median 0.78497 0.67834 NaN 1 0 Median 0.94906 0.95462 39.269 2 0 Median NaN NaN NaN 0 0 Median 25307000 12300000 13007000 0 0 0 2339200 1005100 1334100 5692100 1896800 3795200 6726700 3403500 3323200 10549000 5995000 4554400 0 0 0 399 2845 412 1793;1794;1795;1796;1797 1835;1836;1837 1836 3 AATNHVTPEEKEQVYR KKECAGYRERLKNIKAATNHVTPEEKEQVY ATNHVTPEEKEQVYRERQKYCKEWRKRKRM K A A Y R E 2 1 1 0 0 1 3 0 1 0 0 1 0 0 1 0 2 0 1 2 0 0 16 1 1870.9173 Q9P2W1;K7ERB6 Q9P2W1 149 164 PSMC3IP Homologous-pairing protein 2 homolog yes no 4 0.057442 10.816 By MS/MS 1 0.96297 0.98556 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96297 0.98556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1025400 497750 527630 0 0 0 0 0 0 1025400 497750 527630 0 0 0 0 0 0 0 0 0 400 4230 413 1798 1838 1838 1 AATPTLTTFPTIR PGPCFGGRTLEEIWRAATPTLTTFPTIRVG WRAATPTLTTFPTIRVGSDVWGERSLAAAR R A A I R V 2 1 0 0 0 0 0 0 0 1 1 0 0 1 2 0 5 0 0 0 0 0 13 0 1388.7664 Q8N9Z2 Q8N9Z2 183 195 CCDC71L Coiled-coil domain-containing protein 71L yes yes 2 0.00080952 64.73 By MS/MS 1 0.74626 0.74523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74626 0.74523 NaN 1 0 Median NaN NaN NaN 0 0 Median 5800600 3239200 2561500 0 0 0 0 0 0 0 0 0 0 0 0 5800600 3239200 2561500 0 0 0 401 3399 414 1799 1839;1840 1839 2 AATQFWR LVVVYYSVDFSFDYRAATQFWRSKVLEVAK VDFSFDYRAATQFWRSKVLEVAKDFPEYTF R A A W R S 2 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 7 0 878.43989 P13667;A0A499FI48 P13667 429 435 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.014908 73.039 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2032 1.0878 8.0319 5 Median 1.1497 1.0878 NaN 1 0 Median 1.414 1.2242 4.0371 2 0 Median 1.0498 1.0843 NaN 1 0 Median 1.2032 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29253000 13737000 15517000 11730000 5462200 6268000 10255000 4196800 6057800 6438000 3661900 2776200 830700 415810 414890 0 0 0 0 0 0 402 1993 415 1800;1801;1802;1803;1804 1841;1842;1843;1844;1845 1845 5 AATSDLEHYDK NPDKFESTDLDMLIKAATSDLEHYDKTRHE MLIKAATSDLEHYDKTRHEEFKKYEMMKEH K A A D K T 2 0 0 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 1 0 0 0 11 0 1248.5622 E9PKG6;P80303;Q2L696;E9PLR0;E9PLE9;A0A2R8Y6G7 E9PKG6 161 171 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 yes no 3 0.001597 45.257 By matching By MS/MS 1 1 0.98358 0.90876 39.559 2 Median 0.69638 0.68702 NaN 1 0 Median 1.3892 1.2021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1965200 882420 1082800 454270 259540 194720 1511000 622880 888100 0 0 0 0 0 0 0 0 0 0 0 0 403 948 416 1805;1806 1846 1846 1 AATSDLEHYDKTR NPDKFESTDLDMLIKAATSDLEHYDKTRHE IKAATSDLEHYDKTRHEEFKKYEMMKEHER K A A T R H 2 1 0 2 0 0 1 0 1 0 1 1 0 0 0 1 2 0 1 0 0 0 13 1 1505.711 E9PKG6;P80303;Q2L696;E9PLR0;E9PLE9;A0A2R8Y6G7 E9PKG6 161 173 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 yes no 3 0.064053 13.413 By MS/MS 1 1.1777 1.1993 NaN 1 Median 1.1777 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 752970 362040 390930 752970 362040 390930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 404 948 417 1807 1847 1847 1 AATSPALFNR VVFTMNPSSEGLKDRAATSPALFNRCVLNW GLKDRAATSPALFNRCVLNWFGDWSTEALY R A A N R C 3 1 1 0 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1046.5509 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3079 3088 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.9099E-07 143.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.97026 0.88633 10.865 4 Median 0.84471 0.8208 NaN 1 0 Median 1.0614 0.848 NaN 1 0 Median 0.88699 0.9264 NaN 1 1 Median 1.2003 1.0465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116840000 57715000 59126000 24160000 12764000 11396000 41021000 19107000 21914000 41227000 20702000 20525000 10433000 5142900 5289900 0 0 0 0 0 0 405 2865 418 1808;1809;1810;1811 1848;1849;1850;1851;1852;1853;1854 1850 7 AATTGSGVKVPR ______________________________ ______________________________ M A A P R N 2 1 0 0 0 0 0 2 0 0 0 1 0 0 1 1 2 0 0 2 0 0 12 1 1142.6408 Q13404 Q13404 2 13 UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes yes 2 0.00095278 84.213 By MS/MS By MS/MS 1 1 1.0399 0.93314 12.79 2 Median 1.0315 1.0215 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0482 0.85245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7653700 3551400 4102200 6329900 2962100 3367900 0 0 0 0 0 0 1323700 589370 734350 0 0 0 0 0 0 406 2809 419 1812;1813 1855;1856;1857 1857 3 AATVGYGILR ISKDRKERVHQGMVRAATVGYGILREGGSA QGMVRAATVGYGILREGGSAVDAVEGAVVA R A A L R E 2 1 0 0 0 0 0 2 0 1 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1019.5764 Q7L266;E9PJK6;A0A087WUG3;A0A087WZI5 Q7L266 30 39 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes no 2 0.00037324 81.191 By MS/MS By MS/MS By matching 1 2 1 1.2888 1.1515 22.277 4 Median 1.0649 1.0076 NaN 1 0 Median 1.6998 1.4326 21.116 2 0 Median 1.1505 1.0747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10254000 4843400 5410500 7302900 3775900 3527000 2012200 656490 1355700 938840 411060 527780 0 0 0 0 0 0 0 0 0 407 3220 420 1814;1815;1816;1817 1858;1859;1860 1858 3 AAVATFLQSVQVPEFTPK NLFAQTYGLTGSQDRAAVATFLQSVQVPEF ATFLQSVQVPEFTPKSGVKIHVSDQELQSA R A A P K S 3 0 0 0 0 2 1 0 0 0 1 1 0 2 2 1 2 0 0 3 0 0 18 0 1932.0357 P22314;Q5JRR6 P22314 785 802 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 1.575E-32 202.61 By MS/MS By MS/MS By MS/MS 4 5 1 0.85683 0.78068 17.229 10 Median 0.76107 0.73422 15.014 4 0 Median 1.0422 0.90791 8.3231 5 0 Median 0.69329 0.75064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78995000 43372000 35623000 73272000 40366000 32906000 2625800 1315700 1310100 3097700 1690800 1406900 0 0 0 0 0 0 0 0 0 408 2100 421 1818;1819;1820;1821;1822;1823;1824;1825;1826;1827 1861;1862;1863;1864;1865;1866;1867 1862 7 AAVAVVPLVSEDK PLSSSSVLQEPPAKKAAVAVVPLVSEDKSV KKAAVAVVPLVSEDKSVTVPEAENPRDSLV K A A D K S 3 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 4 0 0 13 0 1296.7289 O75152 O75152 700 712 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.00012318 84.17 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 0.80565 0.78503 17.001 5 Median NaN NaN NaN 0 0 Median 0.91786 0.7823 NaN 1 0 Median 0.92137 0.97284 15.525 2 0 Median 0.80565 0.68925 NaN 1 0 Median 0.76742 0.78503 NaN 1 0 Median NaN NaN NaN 0 0 Median 32201000 16672000 15528000 0 0 0 4325900 2200600 2125300 15420000 8030500 7389100 2758400 1400600 1357800 9696700 5040600 4656100 0 0 0 409 1650 422 1828;1829;1830;1831;1832 1868;1869;1870 1868 3 AAVAVVPLVSEDKSVTVPEAENPR PLSSSSVLQEPPAKKAAVAVVPLVSEDKSV SEDKSVTVPEAENPRDSLVLPPTQSSSDSS K A A P R D 4 1 1 1 0 0 3 0 0 0 1 1 0 0 3 2 1 0 0 6 0 0 24 1 2476.3173 O75152 O75152 700 723 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 3 0.018264 22.123 By MS/MS 1 0.6202 0.68628 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6202 0.68628 NaN 1 1 Median NaN NaN NaN 0 0 Median 2435400 1572300 863040 0 0 0 0 0 0 0 0 0 0 0 0 2435400 1572300 863040 0 0 0 410 1650 423 1833 1871 1871 1 AAVDAGFVPNDMQVGQTGK YDLADQLHAAVGASRAAVDAGFVPNDMQVG AGFVPNDMQVGQTGKIVAPELYIAVGISGA R A A G K I 3 0 1 2 0 2 0 3 0 0 0 1 1 1 1 0 1 0 0 3 0 0 19 0 1903.9098 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6 P13804 250 268 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 1.4292E-09 90.861 By MS/MS By matching By MS/MS 3 2 2 0.75492 0.71499 20.59 7 Median 0.80149 0.69828 3.0502 3 0 Plateau 0.89609 0.75396 49.496 2 0 Median 0.76404 0.73483 3.8717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 245330000 131270000 114060000 205660000 110560000 95092000 13054000 6292100 6762100 26620000 14415000 12205000 0 0 0 0 0 0 0 0 0 411 1996 424;425 1834;1835;1836;1837;1838;1839;1840 1872;1873;1874;1875;1876;1877;1878;1879 1878 789 8 AAVDLEKLR ______________________________ ______________________________ M A A L R A 2 1 0 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1013.5869 P17858;F8WEU2 P17858 2 10 PFKL ATP-dependent 6-phosphofructokinase, liver type yes no 2 0.00019672 130.22 By MS/MS 2 0.91747 0.95959 17.539 2 Median 0.91747 0.95959 17.539 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8693600 4441300 4252300 8693600 4441300 4252300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 412 2047 426 1841;1842 1880;1881 1880 2 AAVDSFYLLYR ______________________________ ______________________________ M A A Y R E 2 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 0 0 2 1 0 0 11 0 1316.6765 Q3SXM5;H3BQI7;H3BT52;H3BNH5 Q3SXM5 2 12 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 2 0.0035747 69.825 By MS/MS 1 1.0226 1.0305 NaN 1 Median 1.0226 1.0305 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1615500 761170 854340 1615500 761170 854340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 413 3013 427 1843 1882 1882 1 AAVEALQSQALHATSQQPLR RRELEEETNAFNRRKAAVEALQSQALHATS LQSQALHATSQQPLRKDKDKKN________ K A A L R K 5 1 0 0 0 4 1 0 1 0 3 0 0 0 1 2 1 0 0 1 0 0 20 0 2118.1182 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 400 419 SEPT8 Septin-8 yes no 3 1.0019E-25 120.31 By MS/MS By MS/MS 3 1 0.95369 0.87309 31.804 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78418 0.76741 38.652 3 2 Median 1.1598 0.99332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60589000 32572000 28017000 0 0 0 0 0 0 52965000 28831000 24134000 7624300 3741200 3883100 0 0 0 0 0 0 414 118 428 1844;1845;1846;1847 1883;1884;1885 1884 3 AAVEALQSQALHATSQQPLRK RRELEEETNAFNRRKAAVEALQSQALHATS QSQALHATSQQPLRKDKDKKN_________ K A A R K D 5 1 0 0 0 4 1 0 1 0 3 1 0 0 1 2 1 0 0 1 0 0 21 1 2246.2131 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 400 420 SEPT8 Septin-8 yes no 3;4 5.6511E-26 127.5 By MS/MS By MS/MS By matching By matching 4 4 1 1 0.88636 0.95013 33.852 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76888 0.82141 19.972 4 0 Median 1.0549 1.0924 5.6066 4 0 Linear 0.58543 0.60771 NaN 1 0 Median 0.40579 0.37205 NaN 1 0 Median 152100000 82051000 70047000 0 0 0 0 0 0 98375000 55049000 43326000 49072000 24109000 24963000 3779500 2368500 1411000 870540 523850 346700 415 118 429 1848;1849;1850;1851;1852;1853;1854;1855;1856;1857 1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897 1896 12 AAVEDSGTTVETIK RAAGEPGTSMPPEKKAAVEDSGTTVETIKL KAAVEDSGTTVETIKLGGVSSTEELDIRTL K A A I K L 2 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 3 0 0 2 0 0 14 0 1419.7093 Q5VTR2;C9J0A5;C9JXC9;C9JWJ4 Q5VTR2 23 36 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 2 3.1995E-11 126.67 By MS/MS By MS/MS By MS/MS 1 1 1 1.028 1.1003 17.371 3 Median NaN NaN NaN 0 0 Median 1.3828 1.1878 NaN 1 1 Median 1.028 1.1003 NaN 1 1 Median 0.98635 0.85243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17504000 7725600 9778400 0 0 0 4223400 1178900 3044600 8296800 4100700 4196200 4983800 2446100 2537700 0 0 0 0 0 0 416 3112 430 1858;1859;1860 1898;1899;1900 1898 3 AAVEEGIVLGGGCALLR NEKKDRVTDALNATRAAVEEGIVLGGGCAL VEEGIVLGGGCALLRCIPALDSLTPANEDQ R A A L R C 3 1 0 0 1 0 2 4 0 1 3 0 0 0 0 0 0 0 0 2 0 0 17 0 1683.8978 P10809 P10809 430 446 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 1.5752E-11 109.6 By MS/MS By MS/MS By MS/MS 2 4 1 1.4366 1.2413 20.767 6 Median 1.0514 1.0158 6.4187 2 0 Median 1.5076 1.3045 6.0114 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7637 1.7621 NaN 1 0 Median NaN NaN NaN 0 0 Median 100360000 40993000 59371000 25805000 12233000 13572000 64366000 25404000 38962000 0 0 0 0 0 0 10193000 3356100 6836800 0 0 0 417 1947 431 1861;1862;1863;1864;1865;1866;1867 1901;1902;1903;1904;1905;1906;1907 1903 7 AAVELEEPEDAR RKALEHVPNSVRLWKAAVELEEPEDARIML LWKAAVELEEPEDARIMLSRAVECCPTSVE K A A A R I 3 1 0 1 0 0 4 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1327.6256 O94906 O94906 409 420 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 3.8688E-24 161.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 0.86045 0.78369 69.448 6 Median NaN NaN NaN 0 0 Median 1.1341 0.96355 NaN 1 1 Median 0.72184 0.76288 NaN 1 0 Median 0.38608 0.36709 123.1 2 0 Median 0.77748 0.79417 NaN 1 0 Median 0.95227 0.77335 NaN 1 0 Median 70350000 37260000 33089000 0 0 0 3724200 1974200 1750100 33699000 18292000 15406000 20298000 10363000 9935400 9867000 5170000 4697000 2761800 1461300 1300500 418 1735 432 1868;1869;1870;1871;1872;1873;1874 1908;1909;1910;1911;1912;1913;1914;1915;1916;1917 1908 10 AAVENLPTFLVELSR PDRLELEAAQKFLERAAVENLPTFLVELSR AAVENLPTFLVELSRVLANPGNSQVARVAA R A A S R V 2 1 1 0 0 0 2 0 0 0 3 0 0 1 1 1 1 0 0 2 0 0 15 0 1657.9039 Q14974;J3QR48 Q14974 28 42 KPNB1 Importin subunit beta-1 yes no 2 2.9992E-08 147.24 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 6 4 6 2 1 4 1.0538 0.92648 15.622 23 Median 0.97013 0.92568 6.8426 6 0 Median 1.1323 0.99186 27.837 4 0 Median 1.2656 0.91155 17.41 6 0 Linear 1.1633 1.0153 4.476 2 0 Median 1.0896 1.117 NaN 1 0 Median 1.1396 0.91334 11.25 4 0 Median 140570000 67062000 73503000 56457000 27942000 28514000 59870000 27662000 32208000 5704300 2866700 2837500 4001800 1858500 2143200 8817900 4099400 4718500 5714900 2632500 3082400 419 2904 433 1875;1876;1877;1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890;1891;1892;1893;1894;1895;1896;1897 1918;1919;1920;1921;1922;1923;1924;1925;1926 1918 9 AAVESLGFILFR LLHVAVSDVNDDVRRAAVESLGFILFRTPE VRRAAVESLGFILFRTPEQCPSVVSLLSES R A A F R T 2 1 0 0 0 0 1 1 0 1 2 0 0 2 0 1 0 0 0 1 0 0 12 0 1321.7394 A0A087WW66;Q99460;H7C378 A0A087WW66 617 628 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0010572 57.598 By MS/MS By MS/MS 4 4 1.1352 1.0835 9.8685 8 Median 1.124 1.1067 8.9253 4 0 Median 1.1668 1.0415 9.5021 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12350000 5832200 6518300 6401700 2963100 3438700 5948700 2869100 3079600 0 0 0 0 0 0 0 0 0 0 0 0 420 54 434 1898;1899;1900;1901;1902;1903;1904;1905 1927;1928;1929;1930 1929 4 AAVEWFDGKDFQGSK KGDATVSYEDPPTAKAAVEWFDGKDFQGSK AAVEWFDGKDFQGSKLKVSLARKKPPMNSM K A A S K L 2 0 0 2 0 1 1 2 0 0 0 2 0 2 0 1 0 1 0 1 0 0 15 1 1683.7893 B0QYK0;Q01844;H7BY36;A0A0D9SFL3;C9JGE3 B0QYK0 387 401 EWSR1 RNA-binding protein EWS yes no 2;3 1.4427E-08 140.09 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 3 6 6 3 1 1.1696 1.1379 29.277 24 Median 0.89233 0.91348 33.2 5 0 Median 1.2287 1.124 8.1071 3 0 Median 1.1308 1.2257 39.962 6 0 Median 1.1828 1.1394 11.206 6 0 Median 0.88848 0.99561 23.222 3 0 Median 1.4099 1.2835 NaN 1 0 Median 200700000 95580000 105120000 76949000 39978000 36971000 2379800 1057700 1322100 88208000 38532000 49676000 11817000 5091500 6725200 21065000 10808000 10257000 277070 112890 164180 421 557 435 1906;1907;1908;1909;1910;1911;1912;1913;1914;1915;1916;1917;1918;1919;1920;1921;1922;1923;1924;1925;1926;1927;1928;1929 1931;1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943 1932 13 AAVFEEIDTYER DTDFDFEGNLALFDKAAVFEEIDTYERRSG FDKAAVFEEIDTYERRSGTRSRGIPNERPT K A A E R R 2 1 0 1 0 0 3 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 12 0 1441.6725 Q96F86;H3BSQ0;H3BPW9 Q96F86 216 227 EDC3 Enhancer of mRNA-decapping protein 3 yes no 2 0.00016877 86.624 By MS/MS By matching 1 1 0.9577 0.90689 35.914 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68379 0.7035 NaN 1 0 Median 1.3413 1.1691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5724000 2926200 2797800 0 0 0 0 0 0 5275500 2746800 2528600 448550 179360 269190 0 0 0 0 0 0 422 3648 436 1930;1931 1944 1944 1 AAVGEEKDINTFVGTPVEK RKLTPSAGKAMHTPKAAVGEEKDINTFVGT EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ K A A E K L 2 0 1 1 0 0 3 2 0 1 0 2 0 1 1 0 2 0 0 3 0 0 19 1 2003.0211 P46013 P46013 1909 1927 MKI67 Antigen KI-67 yes yes 3 1.871E-13 101.92 By MS/MS By MS/MS By MS/MS By matching 2 5 2 1 0.94788 1.0223 18.69 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86152 0.98706 3.9141 2 0 Median 1.2251 1.1136 25.943 5 1 Median 0.96641 1.0405 1.4401 2 2 Median 0.93924 0.83815 NaN 1 0 Median 153500000 77630000 75869000 0 0 0 0 0 0 129240000 64976000 64263000 7500500 3792800 3707700 16421000 8697100 7724400 336780 163410 173380 423 2335 437 1932;1933;1934;1935;1936;1937;1938;1939;1940;1941 1945;1946;1947;1948;1949;1950;1951;1952;1953;1954;1955 1947 11 AAVGQESPGGLEAGNAK KNDDLNKPINKGRKRAAVGQESPGGLEAGN VGQESPGGLEAGNAKAPKLQDLAKKAAPAE R A A A K A 4 0 1 0 0 1 2 4 0 0 1 1 0 0 1 1 0 0 0 1 0 0 17 0 1554.7638 Q29RF7 Q29RF7 1299 1315 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 2.7598E-05 56.225 By MS/MS By MS/MS 1 1 0.98271 0.93684 0.52671 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87301 0.93336 NaN 1 0 Median 1.1062 0.94034 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11336000 6124600 5211800 0 0 0 0 0 0 9181400 5116300 4065100 2155000 1008400 1146700 0 0 0 0 0 0 424 3003 438 1942;1943 1956;1957;1958 1957 3 AAVGRPLDKHEGALETLLR AQYCRAAEELSKLRRAAVGRPLDKHEGALE RPLDKHEGALETLLRYYDQICSIEPKFPFS R A A L R Y 3 2 0 1 0 0 2 2 1 0 4 1 0 0 1 0 1 0 0 1 0 0 19 2 2045.1382 Q8WUM4;A0A3B3IT07;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 52 70 PDCD6IP Programmed cell death 6-interacting protein yes no 3;4 0.00054013 32.627 By MS/MS By matching By matching 2 1 1 1.203 1.3542 14.964 4 Median 1.2972 1.3971 14.139 2 0 Median 0.90655 1.1037 NaN 1 0 Median 1.2329 1.4506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22562000 9661000 12901000 17560000 7291100 10269000 669380 344420 324960 4332600 2025500 2307200 0 0 0 0 0 0 0 0 0 425 3493 439 1944;1945;1946;1947 1959;1960;1961 1959 3 AAVHLEGKIEQAQR QTKTNRAVANSRPAKAAVHLEGKIEQAQRW KAAVHLEGKIEQAQRWIDNPTVDDRGVGQA K A A Q R W 3 1 0 0 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 14 1 1548.8372 P18206 P18206 489 502 VCL Vinculin yes yes 2;3 9.6458E-05 73.927 By MS/MS 2 0.95896 0.99778 9.4906 2 Median 0.95896 0.99778 9.4906 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12156000 6445400 5711100 12156000 6445400 5711100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 426 2057 440 1948;1949 1962;1963;1964;1965 1963 4 AAVIGDVIR ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQ CHWTQRAAVIGDVIRVYSGHQGRTIIFCET R A A I R V 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 912.53927 Q9NR30 Q9NR30 424 432 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00066073 106.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1.344 1.3659 22.272 11 Median 1.6602 1.6233 18.785 2 0 Median 1.4721 1.2735 33.633 2 0 Median 1.344 1.417 NaN 1 0 Median 1.365 1.1585 14.33 2 0 Median 1.3478 1.3827 1.727 2 0 Median 1.1688 0.96035 8.2825 2 0 Median 146550000 62152000 84395000 8507600 3468200 5039500 25455000 11772000 13682000 60968000 25428000 35540000 8642800 3728100 4914700 37491000 15211000 22280000 5482600 2545000 2937600 427 4076 441 1950;1951;1952;1953;1954;1955;1956;1957;1958;1959;1960 1966;1967;1968;1969;1970;1971;1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982 1972 17 AAVIGPDVFAK DPKANKGHSVEEALRAAVIGPDVFAKLLSA EALRAAVIGPDVFAKLLSAERAVTGYTDPY R A A A K L 3 0 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 11 0 1086.6073 P58107;A0A075B730 P58107 670 680 EPPK1 Epiplakin yes no 2 0.032 48.091 By MS/MS 1 0.65756 0.65977 NaN 1 Median 0.65756 0.65977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23368000 14029000 9338200 23368000 14029000 9338200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 428 2520 442 1961 1983 1983 1 AAVKDVEEEKFPTQLSR GLLPPGMTIDLFRGKAAVKDVEEEKFPTQL VKDVEEEKFPTQLSRHIKFGQKSHVECARF K A A S R H 2 1 0 1 0 1 3 0 0 0 1 2 0 1 1 1 1 0 0 2 0 0 17 2 1946.0109 Q2TAY7 Q2TAY7 191 207 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3;4 7.0246E-06 65.107 By MS/MS By MS/MS By MS/MS 5 2 2 1.0252 1.1193 32.265 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0527 1.2214 35.183 5 1 Median 1.0554 1.1377 2.3088 2 0 Median 0.75295 0.86132 8.7567 2 0 Median NaN NaN NaN 0 0 Median 70403000 32597000 37806000 0 0 0 0 0 0 34578000 14211000 20367000 17158000 8443200 8714900 18667000 9942800 8724400 0 0 0 429 3005 443 1962;1963;1964;1965;1966;1967;1968;1969;1970 1984;1985;1986;1987;1988 1988 5 AAVKEPLEFHAK ______________________________ ______________________________ M A A A K R 3 0 0 0 0 0 2 0 1 0 1 2 0 1 1 0 0 0 0 1 0 0 12 1 1338.7296 Q03701 Q03701 2 13 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.00042843 72.089 By MS/MS By matching By matching 1 2 1 1.2127 1.1956 18.32 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87765 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2879 1.4125 4.4047 2 0 Median 1.1529 1.0439 NaN 1 0 Median 28699000 13674000 15025000 0 0 0 0 0 0 18577000 9516600 9059900 0 0 0 9320100 3843100 5477100 801880 313890 487990 430 2710 444 1971;1972;1973;1974 1989;1990 1989 2 AAVLGENGR KGYAFVQYSNERHARAAVLGENGRVLAGQT NERHARAAVLGENGRVLAGQTLDINMAGEP R A A G R V 2 1 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 885.46683 Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2 Q9UKM9 70 78 RALY RNA-binding protein Raly yes no 2 0.044997 32.355 By MS/MS By MS/MS 1 1 1.0861 1.0265 23.396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83808 0.87001 NaN 1 0 Median 1.4076 1.2112 NaN 1 0 Median 6254600 3113500 3141100 0 0 0 0 0 0 0 0 0 0 0 0 5387900 2752200 2635600 866790 361290 505500 431 4313 445 1975;1976 1991;1992;1993 1991 3 AAVLKPVLLGLR ______________________________ ______________________________ M A A L R D 2 1 0 0 0 0 0 1 0 0 4 1 0 0 1 0 0 0 0 2 0 0 12 1 1248.8282 Q9BRP1 Q9BRP1 2 13 PDCD2L Programmed cell death protein 2-like yes yes 2 0.0027234 40.002 By matching By matching By MS/MS By matching 1 2 1 1 1.0142 0.89547 29.137 5 Median 1.1306 1.2108 NaN 1 0 Median 0.92643 0.84446 8.2943 2 0 Median NaN NaN NaN 0 0 Median 0.9169 0.80014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6719 1.5466 NaN 1 0 Median 12062000 5747800 6314300 2203800 907000 1296800 6706200 3336100 3370100 0 0 0 3101600 1483600 1618000 0 0 0 50430 21012 29418 432 3797 446 1977;1978;1979;1980;1981 1994 1994 1 AAVLLEQER DHSLKEHELLEQQKRAAVLLEQERQQEIAK LEQQKRAAVLLEQERQQEIAKMGTPVPRPP R A A E R Q 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1027.5662 Q13435;H0YCG1;E9PJ04;E9PJT3 Q13435 184 192 SF3B2 Splicing factor 3B subunit 2 yes no 2 8.8415E-06 153.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 3 1.0448 1.005 14.696 10 Median 0.72702 0.70157 NaN 1 0 Median 1.2163 1.0372 3.8169 2 1 Median 0.9289 1.0213 NaN 1 0 Median 1.2829 1.0884 NaN 1 1 Median 1.0321 1.0459 6.2793 2 0 Median 1.0504 0.86873 2.3176 3 2 Plateau 109130000 54351000 54776000 7877400 5774400 2103000 15117000 6981600 8134900 15043000 7609300 7434200 6832400 3181000 3651300 46176000 22232000 23943000 18081000 8572000 9509000 433 2817 447 1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993 1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005;2006;2007;2008 2005 14 AAVLLEQERQQEIAK DHSLKEHELLEQQKRAAVLLEQERQQEIAK AAVLLEQERQQEIAKMGTPVPRPPQDMGQI R A A A K M 3 1 0 0 0 3 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 15 1 1724.9421 Q13435;H0YCG1;E9PJ04;E9PJT3 Q13435 184 198 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 1.4116E-08 142.08 By MS/MS By MS/MS By MS/MS By matching 2 2 5 1 0.9469 1.0628 25.192 10 Median 0.69212 0.71886 36.736 2 0 Median NaN NaN NaN 0 0 Median 0.95601 1.0839 1.485 2 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0767 17.273 5 0 Median 0.92318 0.8063 NaN 1 0 Median 89671000 45105000 44566000 6071300 3021700 3049700 0 0 0 31043000 15240000 15803000 0 0 0 51285000 26214000 25071000 1271800 629160 642690 434 2817 448 1994;1995;1996;1997;1998;1999;2000;2001;2002;2003 2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020 2012 12 AAVLQQVLER ______________________________ ______________________________ M A A E R T 2 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1125.6506 P12270 P12270 2 11 TPR Nucleoprotein TPR yes yes 2 0.00040502 78.334 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 3 3 2 1.2939 1.1259 14.881 14 Median 1.0817 1.0309 2.2382 2 0 Median 1.3937 1.2011 11.568 4 0 Median 1.0304 1.1233 12.476 3 0 Median 1.4726 1.2717 6.2616 3 0 Plateau NaN NaN NaN 0 0 Median 1.1979 0.96906 34.602 2 0 Median 146350000 69746000 76601000 56757000 26066000 30690000 6097000 2415600 3681400 81129000 40362000 40768000 596300 247050 349250 0 0 0 1767900 655640 1112300 435 1978 449 2004;2005;2006;2007;2008;2009;2010;2011;2012;2013;2014;2015;2016;2017 2021;2022;2023;2024;2025;2026;2027;2028;2029 2022 9 AAVLYVMDLSEQCGHGLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH LYVMDLSEQCGHGLREQLELFQNIRPLFIN R A A L R E 2 1 0 1 1 1 1 2 1 0 3 0 1 0 0 1 0 0 1 2 0 0 18 0 2017.9714 Q9BZE4 Q9BZE4 249 266 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 4.7989E-05 56.959 By MS/MS 1 1.0743 1.1369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0743 1.1369 NaN 1 1 Median NaN NaN NaN 0 0 Median 2945100 1573500 1371600 0 0 0 0 0 0 0 0 0 0 0 0 2945100 1573500 1371600 0 0 0 436 3898 450 2018 2030 2030 1 AAVMATLLFPGR YTMRGAGAVIHTHSKAAVMATLLFPGREFK HSKAAVMATLLFPGREFKITHQEMIKGIKK K A A G R E 3 1 0 0 0 0 0 1 0 0 2 0 1 1 1 0 1 0 0 1 0 0 12 0 1245.6904 Q96GX9;S4R3D6 Q96GX9 120 131 APIP Methylthioribulose-1-phosphate dehydratase yes no 2 0.00063335 92.062 By MS/MS 3 1.0295 0.97587 30.149 3 Median 1.0295 0.97587 30.149 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17237000 8706700 8529800 17237000 8706700 8529800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 437 3663 451;452 2019;2020;2021 2031;2032;2033 2032 1800 3 AAVMHDILDMMPEGIK VTKQRVESHFDLELRAAVMHDILDMMPEGI AVMHDILDMMPEGIKQNKARTILQHLSEAW R A A I K Q 2 0 0 2 0 0 1 1 1 2 1 1 3 0 1 0 0 0 0 1 0 0 16 0 1769.8514 Q6P2Q9;I3L0J9 Q6P2Q9 687 702 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 8.4051E-05 74.76 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0106 0.92253 14.072 6 Median 0.99802 0.93996 NaN 1 0 Median 1.0686 0.94653 6.2784 2 0 Median 0.91944 1.0245 26.831 2 0 Median NaN NaN NaN 0 0 Median 0.82823 0.85288 NaN 1 0 Median NaN NaN NaN 0 0 Median 17879000 8923900 8954800 1844600 980830 863740 7350100 3446400 3903700 8294900 4297500 3997300 0 0 0 389110 199140 189970 0 0 0 438 3157 453 2022;2023;2024;2025;2026;2027 2034;2035;2036;2037 2037 4 AAVMVHQLSK LTKLLNDEDQVVVNKAAVMVHQLSKKEASR VVVNKAAVMVHQLSKKEASRHAIMRSPQMV K A A S K K 2 0 0 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 0 2 0 0 10 0 1082.5906 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0 A0A2R8Y804 171 180 CTNNB1 Catenin beta-1 yes no 2 0.00034554 84.743 By matching By MS/MS 1 1 1.0353 0.98173 10.423 2 Median 0.89649 0.91198 NaN 1 0 Median 1.1957 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2674400 1333900 1340500 499360 235000 264360 2175000 1098900 1076200 0 0 0 0 0 0 0 0 0 0 0 0 439 368 454 2028;2029 2038;2039 2039 2 AAVMVYDDANKK ______________________________ QARAAVMVYDDANKKWVPAGGSTGFSRVHI R A A K K W 3 0 1 2 0 0 0 0 0 0 0 2 1 0 0 0 0 0 1 2 0 0 12 1 1323.6493 A0A0U1RRM6;Q8N8S7;A0A075B6E5 A0A0U1RRM6 11 22 ENAH Protein enabled homolog yes no 2;3 0.00064091 90.629 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 1 0.95165 0.95733 10.387 9 Median 0.96135 0.99263 9.3901 2 0 Median 0.95165 0.92032 12.892 3 1 Median 0.8754 0.99144 6.5002 2 0 Median 1.0193 0.9958 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0165 1.0429 NaN 1 0 Median 21252000 10085000 11166000 6516500 3286600 3230000 6702700 3099700 3603000 6749300 3113800 3635500 819240 404380 414860 0 0 0 464000 181060 282950 440 313 455 2030;2031;2032;2033;2034;2035;2036;2037;2038;2039 2040;2041;2042;2043;2044;2045;2046;2047;2048;2049 2048 10 AAVPDAVGK NLCFVGLISMIDPPRAAVPDAVGKCRSAGI MIDPPRAAVPDAVGKCRSAGIKVIMVTGDH R A A G K C 3 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 9 0 826.45487 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1 P05023 597 605 ATP1A1;ATP1A3;ATP1A2 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 2 0.0061228 55.531 By MS/MS 4 0.90069 0.78997 12.717 4 Median NaN NaN NaN 0 0 Median 0.90069 0.78997 12.717 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15764000 8140400 7623300 0 0 0 15764000 8140400 7623300 0 0 0 0 0 0 0 0 0 0 0 0 441 1857 456 2040;2041;2042;2043 2050;2051;2052;2053 2053 4 AAVPELLQQQEEDR ______________________________ MAAVPELLQQQEEDRSKLRSVSVDLNVDPS M A A D R S 2 1 0 1 0 3 3 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 14 0 1624.8057 Q9Y5X3;Q5QPE5;Q5QPE4;U3KQL0;U3KQP5 Q9Y5X3 2 15 SNX5 Sorting nexin-5 yes no 2 0.0021757 44.765 By matching By MS/MS By matching 1 1 1 0.94539 0.82773 5.6469 3 Median NaN NaN NaN 0 0 Median 1.017 0.89425 NaN 1 0 Median 0.80162 0.80114 NaN 1 0 Median 0.94539 0.82773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7101900 4086300 3015600 0 0 0 616110 359500 256610 6154400 3592600 2561800 331360 134180 197180 0 0 0 0 0 0 442 4471 457 2044;2045;2046 2054;2055 2054 2 AAVPGYPQPSGTPVKPTALTGTLQVR PPAHPLRSRVTRELRAAVPGYPQPSGTPVK TPVKPTALTGTLQVRLLGCEQLLTAVPGRS R A A V R L 3 1 0 0 0 2 0 3 0 0 2 1 0 0 5 1 4 0 1 3 0 0 26 1 2605.4228 Q6P5Z2 Q6P5Z2 259 284 PKN3 Serine/threonine-protein kinase N3 yes yes 3 0.042531 11.207 By MS/MS 1 0.44918 0.51082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44918 0.51082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2106800 1252300 854590 0 0 0 0 0 0 2106800 1252300 854590 0 0 0 0 0 0 0 0 0 443 3162 458 2047 2056 2056 1 AAVPSGASTGIYEALELR PTVEVDLFTSKGLFRAAVPSGASTGIYEAL PSGASTGIYEALELRDNDKTRYMGKGVSKA R A A L R D 4 1 0 0 0 0 2 2 0 1 2 0 0 0 1 2 1 0 1 1 0 0 18 0 1803.9367 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y798;A0A2R8YEG5;E5RI09;E5RG95;K7EPM1;K7EKN2;E5RGZ4;P09104;F5H0C8;F5H1C3 P06733 33 50 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase no no 2;3 6.9971E-14 150.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 10 3 4 2 2 0.99304 0.88838 35.557 26 Median 1.0246 0.95205 4.0679 5 0 Median 0.95254 0.80281 42.898 10 1 Median 1.0102 0.96239 4.9925 3 0 Median 1.0285 0.88945 34.262 4 0 Median 0.99983 1.0036 15.654 2 1 Median 1.5085 1.2614 42.455 2 0 Median 1603300000 800870000 802390000 717990000 353950000 364040000 505500000 258460000 247040000 348770000 173430000 175340000 23595000 11616000 11980000 5350200 2575900 2774300 2048900 834170 1214700 444 1873;1911 459 2048;2049;2050;2051;2052;2053;2054;2055;2056;2057;2058;2059;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;2073 2057;2058;2059;2060;2061;2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093;2094 2081 38 AAVPSGASTGIYEALELRDNDK PTVEVDLFTSKGLFRAAVPSGASTGIYEAL STGIYEALELRDNDKTRYMGKGVSKAVEHI R A A D K T 4 1 1 2 0 0 2 2 0 1 2 1 0 0 1 2 1 0 1 1 0 0 22 1 2276.1285 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y798;A0A2R8YEG5 P06733 33 54 ENO1 Alpha-enolase;Enolase yes no 3 2.334E-12 70.315 By MS/MS By matching By MS/MS By matching 3 2 1 1 0.87826 0.89057 16.113 7 Median 0.84306 0.88657 12.642 3 0 Median 0.79315 0.74075 27.223 2 0 Median 0.87826 0.89057 NaN 1 0 Median 0.95588 0.91987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57911000 27650000 30260000 44404000 21489000 22915000 1216300 548420 667870 10350000 4657000 5693100 1940200 956150 984020 0 0 0 0 0 0 445 1873 460 2074;2075;2076;2077;2078;2079;2080 2095;2096;2097;2098;2099;2100;2101 2096 7 AAVPSGASTGIYEALELRDNDKTR PTVEVDLFTSKGLFRAAVPSGASTGIYEAL GIYEALELRDNDKTRYMGKGVSKAVEHINK R A A T R Y 4 2 1 2 0 0 2 2 0 1 2 1 0 0 1 2 2 0 1 1 0 0 24 2 2533.2772 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y798;A0A2R8YEG5 P06733 33 56 ENO1 Alpha-enolase;Enolase yes no 3;4 1.1438E-24 109.05 By MS/MS By matching 4 2 0.99934 1.0568 5.7043 6 Plateau 0.99728 1.1222 5.1193 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88562 1.0118 6.7344 2 0 Median NaN NaN NaN 0 0 Median 148320000 70292000 78026000 142990000 67560000 75428000 0 0 0 0 0 0 0 0 0 5330600 2732200 2598400 0 0 0 446 1873 461 2081;2082;2083;2084;2085;2086 2102;2103;2104;2105;2106;2107;2108;2109;2110 2107 9 AAVQAAEVK ______________________________ ______________________________ M A A V K V 4 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 9 0 885.49198 Q15046;H3BRC9 Q15046 2 10 KARS Lysine--tRNA ligase yes no 2 0.0031296 80.219 By MS/MS 1 0.99453 0.84066 NaN 1 Median NaN NaN NaN 0 0 Median 0.99453 0.84066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6071000 2798300 3272700 0 0 0 6071000 2798300 3272700 0 0 0 0 0 0 0 0 0 0 0 0 447 2919 462 2087 2111 2111 1 AAVQAAEVKVDGSEPK ______________________________ AVQAAEVKVDGSEPKLSKNELKRRLKAEKK M A A P K L 4 0 0 1 0 1 2 1 0 0 0 2 0 0 1 1 0 0 0 3 0 0 16 1 1597.8312 Q15046;H3BRC9 Q15046 2 17 KARS Lysine--tRNA ligase yes no 2 2.9442E-19 170.04 By MS/MS 2 0.94716 0.9282 0.83414 2 Median 0.94716 0.9282 0.83414 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32112000 15800000 16312000 32112000 15800000 16312000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 448 2919 463 2088;2089 2112;2113;2114 2112 3 AAVQFLNNAWGIQK NKFLSLANKRLPVKRAAVQFLNNAWGIQKK RAAVQFLNNAWGIQKKQNAKRFKRRWMVRK R A A Q K K 3 0 2 0 0 2 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 14 0 1558.8256 Q9UMY1 Q9UMY1 224 237 NOL7 Nucleolar protein 7 yes yes 2 0.00041646 70.908 By matching By MS/MS By matching 1 2 1 1.7807 1.9069 66.783 4 Linear 0.67764 0.64177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2109 1.2278 8.7735 2 0 Median 0.35304 0.30299 NaN 1 0 Median 21873000 9217300 12655000 2306900 1504200 802700 0 0 0 0 0 0 0 0 0 18317000 6782400 11535000 1248600 930740 317900 449 4338 464 2090;2091;2092;2093 2115;2116;2117 2116 3 AAVQFLNNAWGIQKK NKFLSLANKRLPVKRAAVQFLNNAWGIQKK AAVQFLNNAWGIQKKQNAKRFKRRWMVRKM R A A K K Q 3 0 2 0 0 2 0 1 0 1 1 2 0 1 0 0 0 1 0 1 0 0 15 1 1686.9206 Q9UMY1 Q9UMY1 224 238 NOL7 Nucleolar protein 7 yes yes 3 0.021672 18.833 By MS/MS 1 1.2561 1.3241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2561 1.3241 NaN 1 0 Median NaN NaN NaN 0 0 Median 5342300 2452000 2890300 0 0 0 0 0 0 0 0 0 0 0 0 5342300 2452000 2890300 0 0 0 450 4338 465 2094 2118;2119 2119 2 AAVQMDPELAKR ______________________________ ______________________________ M A A K R L 3 1 0 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 12 1 1327.6918 A2A2Q9;Q9Y312 A2A2Q9 2 13 AAR2 Protein AAR2 homolog yes no 2 0.021425 46.462 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 451 497 466 2095 2120 2120 1 AAVTSLFAK LATTQTDTMLSAEEKAAVTSLFAKVKVDEV LSAEEKAAVTSLFAKVKVDEVGGEALGRLL K A A A K V 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 906.51747 CON__Q3SX09 CON__Q3SX09 64 72 yes yes 2 5.2357E-06 129.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.021561 0.022789 144.19 5 Median 0.0027782 0.0025036 NaN 1 1 Median 0.038661 0.032046 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.0060427 0.0048372 NaN 1 1 Median 0.041497 0.044455 94.5 2 2 Median NaN NaN NaN 0 0 Median 121370000 116010000 5368000 53080000 52923000 156890 1362900 1282100 80760 0 0 0 16434000 16311000 123050 50497000 45489000 5007300 0 0 0 + 452 777 467 2096;2097;2098;2099;2100 2121;2122;2123;2124;2125 2125 5 AAVVENVVK ______________________________ ______________________________ M A A V K L 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 9 0 927.53893 Q92785;J3KMZ8;E9PN04 Q92785 2 10 DPF2 Zinc finger protein ubi-d4 yes no 2 0.002066 75.109 By MS/MS By matching By matching 3 5 2 1.1224 0.99919 20.096 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99677 0.95466 15.126 3 0 Plateau 1.3243 1.1912 17.974 5 0 Median 1.005 1.0147 2.482 2 0 Median NaN NaN NaN 0 0 Median 59116000 27142000 31974000 0 0 0 0 0 0 41933000 20021000 21912000 14906000 6032400 8874000 2275900 1088000 1187900 0 0 0 453 1299 468 2101;2102;2103;2104;2105;2106;2107;2108;2109;2110 2126;2127 2127 2 AAVVHHFESFPAGSTLIFYK LVDLELSYGFENGQKAAVVHHFESFPAGST HFESFPAGSTLIFYKYCDHENAAFKDVALV K A A Y K Y 3 0 0 0 0 0 1 1 2 1 1 1 0 3 1 2 1 0 1 2 0 0 20 0 2220.1368 Q8NFQ8 Q8NFQ8 361 380 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 3 0.057561 16.487 By MS/MS 1 0.8851 0.85159 NaN 1 Median 0.8851 0.85159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3081200 1275500 1805600 3081200 1275500 1805600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 454 3440 469 2111 2128 2128 1 AAVVPLGTWR VTGVLVVTTWLLSGRAAVVPLGTWRRLSLC LLSGRAAVVPLGTWRRLSLCWFAVCGFIHL R A A W R R 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 1 0 2 0 0 10 0 1068.608 Q15125;C9J719;C9JJ78;A0A494C0F3 Q15125 53 62 EBP 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase yes no 2 0.012347 41.448 By MS/MS By matching 1 1 2.1212 1.6791 80.666 2 Median NaN NaN NaN 0 0 Median 1.1512 0.94921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.9085 2.9703 NaN 1 0 Median 8786600 3992000 4794600 0 0 0 7708600 3743800 3964700 0 0 0 0 0 0 0 0 0 1078000 248150 829870 455 2930 470 2112;2113 2129;2130 2130 2 AAVVTSPPPTTAPHK ______________________________ AAVVTSPPPTTAPHKERYFDRVDENNPEYL R A A H K E 3 0 0 0 0 0 0 0 1 0 0 1 0 0 4 1 3 0 0 2 0 0 15 0 1472.7987 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25;D6RJE2;D6RAH3 E7EV99 7 21 ADD1 Alpha-adducin yes no 3 0.01399 23.008 By MS/MS By MS/MS 1 3 0.61533 0.52859 14.203 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3759 0.40309 NaN 1 0 Median 0.61844 0.53917 2.607 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4818000 3118300 1699700 0 0 0 0 0 0 2272400 1583800 688620 2545600 1534500 1011100 0 0 0 0 0 0 456 866 471 2114;2115;2116;2117 2131;2132;2133;2134 2133 4 AAVWEITGAEFSK NKIYYPDFIVPDPKKAAVWEITGAEFSKSE KKAAVWEITGAEFSKSEAHTADGISIRFPR K A A S K S 3 0 0 0 0 0 2 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 13 0 1407.7034 P49916 P49916 779 791 LIG3 DNA ligase 3 yes yes 2 8.0947E-06 106.29 By MS/MS By MS/MS 1 2 0.88705 0.96944 74.75 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88705 0.96944 NaN 1 1 Median 0.57158 0.52874 93.408 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10387000 5482100 4904900 0 0 0 0 0 0 9538600 5046800 4491900 848360 435300 413070 0 0 0 0 0 0 457 2406 472 2118;2119;2120 2135;2136 2135 2 AAWEAYLSR ISAADRLEAAEMYRKAAWEAYLSRLGV___ AEMYRKAAWEAYLSRLGV____________ K A A S R L 3 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 9 0 1065.5243 P11172 P11172 469 477 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 2 0.027535 51.066 By MS/MS 1 1.2311 1.1968 NaN 1 Median 1.2311 1.1968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6505600 2866200 3639400 6505600 2866200 3639400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 458 1953 473 2121 2137 2137 1 AAYAGGLVLDPK EIDGDTNKYKKGRKKAAYAGGLVLDPKVGF RKKAAYAGGLVLDPKVGFYDKFILLLDFNS K A A P K V 3 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 1 1 0 0 12 0 1173.6394 A0A087WU64;A6NMQ1;P09884 A0A087WU64 836 847 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.015772 34.692 By MS/MS By matching 2 1 0.76674 0.74126 24.672 3 Median 0.711 0.69667 8.7734 2 0 Median 1.1976 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14963000 8192300 6770300 12966000 7202500 5763600 1996500 989770 1006700 0 0 0 0 0 0 0 0 0 0 0 0 459 26 474 2122;2123;2124 2138;2139;2140 2138 3 AAYDIEVNTR EIEMAKAQRDYELKKAAYDIEVNTRRAQAD YELKKAAYDIEVNTRRAQADLAYQLQVAKT K A A T R R 2 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 10 0 1150.5619 O75955;A0A140T9R1;A2AB10;A2AB09;A2AB12;A0A140T9X0;A0A140T959;A0A140T9C3;A0A140T905;A2ABJ5 O75955 221 230 FLOT1 Flotillin-1 yes no 2 0.0014621 65.305 By matching By MS/MS By MS/MS 1 1 1 1.4735 1.2508 44.538 3 Median 0.74869 0.73453 NaN 1 0 Median 1.4735 1.2508 NaN 1 0 Median 1.773 1.7792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14668000 6297900 8370000 5108900 2655900 2453000 4594500 1923400 2671100 4964500 1718600 3245900 0 0 0 0 0 0 0 0 0 460 1712 475 2125;2126;2127 2141;2142 2142 2 AAYDVSSFSFFQR LSVLYKGEAKVVLLKAAYDVSSFSFFQRSS LKAAYDVSSFSFFQRSSVQEFMTFTSQLIV K A A Q R S 2 1 0 1 0 1 0 0 0 0 0 0 0 3 0 3 0 0 1 1 0 0 13 0 1523.7045 O15498 O15498 21 33 YKT6 Synaptobrevin homolog YKT6 yes yes 2 2.0999E-05 94.297 By MS/MS 1 1.0635 1.0084 NaN 1 Median 1.0635 1.0084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10919000 5410800 5507900 10919000 5410800 5507900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 461 1550 476 2128 2143;2144 2143 2 AAYEAELGDAR TESEEVVSREVSGIKAAYEAELGDARKTLD SGIKAAYEAELGDARKTLDSVAKERARLQL K A A A R K 4 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1164.5411 P02545;Q3BDU5 P02545 79 89 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00012526 138.98 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 5 1.118 1.0967 14.072 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1097 1.1038 0.91323 2 0 Median 1.4134 1.1949 30.304 3 0 Median 1.0341 1.038 2.0394 4 0 Median 1.4151 1.145 5.4392 4 0 Median 500340000 222650000 277680000 0 0 0 0 0 0 139690000 66558000 73136000 84087000 32997000 51090000 204890000 94339000 110550000 71670000 28759000 42911000 462 1834;3010 477 2129;2130;2131;2132;2133;2134;2135;2136;2137;2138;2139;2140;2141;2142 2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172 2152 28 AAYEAELGDARK TESEEVVSREVSGIKAAYEAELGDARKTLD GIKAAYEAELGDARKTLDSVAKERARLQLE K A A R K T 4 1 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1292.6361 P02545;Q3BDU5 P02545 79 90 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 8.0334E-06 122.96 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 8 4 1.0783 1.1491 26.428 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1889 1.2852 4.6463 3 0 Median 2.3718 2.2744 29.524 3 0 Plateau 0.9466 1.033 17.845 8 0 Median 1.2277 1.095 15.657 4 0 Median 178820000 81640000 97180000 0 0 0 0 0 0 21231000 9585400 11645000 7143900 2493100 4650800 107340000 50066000 57270000 43109000 19495000 23613000 463 1834;3010 478 2143;2144;2145;2146;2147;2148;2149;2150;2151;2152;2153;2154;2155;2156;2157;2158;2159;2160 2173;2174;2175;2176;2177;2178;2179;2180;2181;2182;2183;2184;2185;2186;2187;2188;2189;2190;2191;2192;2193;2194;2195;2196;2197;2198 2183 26 AAYFGIYDTAK YQGFNVSVQGIIIYRAAYFGIYDTAKGMLP IIYRAAYFGIYDTAKGMLPDPKNTHIVISW R A A A K G 3 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 2 0 0 0 11 0 1218.5921 P05141 P05141 189 199 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00018232 77.677 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 1 4 4 1.4886 1.2669 20.239 16 Median 1.1458 1.0688 5.8697 4 0 Median 1.485 1.2864 1.8512 3 0 Median 1.2006 1.1275 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7401 1.7907 14.901 4 0 Median 1.5396 1.2747 5.425 4 0 Median 278650000 121060000 157590000 188410000 85856000 102560000 52344000 20219000 32125000 8413500 3795400 4618100 0 0 0 25822000 9887900 15934000 3654600 1302200 2352400 464 1861 479 2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176 2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211 2199 13 AAYFGVYDTAK YQGFSVSVQGIIIYRAAYFGVYDTAKGMLP IIYRAAYFGVYDTAKGMLPDPKNTHIVVSW R A A A K G 3 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 11 0 1204.5764 P12235;V9GYG0;P12236 P12236 189 199 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00021132 98.033 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 1 2 1 2 1 1.3006 1.1541 26.308 10 Median 1.2357 1.1628 26.092 3 0 Median 1.3634 1.1454 NaN 1 0 Median 1.1732 1.1239 0.70667 2 2 Median 1.434 1.2224 NaN 1 0 Median 1.8233 1.9015 27.775 2 0 Median 1.2408 1.0443 NaN 1 0 Median 84212000 36975000 47237000 55711000 25008000 30703000 12317000 4980000 7336900 9567900 4366400 5201500 909510 434610 474900 4043600 1507600 2536000 1663200 678490 984710 465 1977;1976 480 2177;2178;2179;2180;2181;2182;2183;2184;2185;2186 2212;2213;2214;2215;2216;2217;2218 2213 7 AAYKLVLIR ______________________________ ______________________________ M A A I R H 2 1 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 9 1 1045.6648 P18669;Q8N0Y7 P18669 2 10 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 2 0.0014761 67.032 By MS/MS By matching 1 1 1.1793 1.2193 10.932 2 Median 1.26 1.3173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1037 1.1286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10675000 4862000 5813400 9807800 4470700 5337100 0 0 0 867650 391340 476310 0 0 0 0 0 0 0 0 0 466 2060 481 2187;2188 2219 2219 1 AAYLNMSEDPSHPSMALNTR KLLEQALVIEEQLRRAAYLNMSEDPSHPSM MSEDPSHPSMALNTRFAEVECLAESHQHLS R A A T R F 3 1 2 1 0 0 1 0 1 0 2 0 2 0 2 3 1 0 1 0 0 0 20 0 2203.999 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1802 1821 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 8.5351E-11 93.371 By MS/MS By MS/MS By MS/MS By matching 7 1 3 1 0.75979 0.79123 14.079 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71412 0.77843 15.104 7 0 Median 0.9273 0.81615 NaN 1 0 Median 0.77109 0.80425 19.551 3 0 Median 0.94208 0.77445 NaN 1 0 Median 224150000 125480000 98669000 0 0 0 0 0 0 185240000 104320000 80917000 4607900 2331600 2276200 33718000 18550000 15168000 582690 274230 308460 467 246 482;483 2189;2190;2191;2192;2193;2194;2195;2196;2197;2198;2199;2200 2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230 2230 97 11 AAYLQETGKPLDETLK DILTKRNNAQRQQIKAAYLQETGKPLDETL AYLQETGKPLDETLKKALTGHLEEVVLALL K A A L K K 2 0 0 1 0 1 2 1 0 0 3 2 0 0 1 0 2 0 1 0 0 0 16 1 1775.9305 P04083;Q5T3N1;Q5T3N0 P04083 82 97 ANXA1 Annexin A1;Annexin yes no 2;3 4.4722E-05 77.305 By MS/MS By matching By MS/MS 2 2 1 1.0261 0.94842 11.847 5 Median 1.1135 1.0302 11.696 2 0 Median 0.99765 0.90595 7.6954 2 0 Median 0.78995 0.8247 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77616000 36646000 40970000 62496000 28843000 33653000 2514500 1179800 1334700 12606000 6622900 5982800 0 0 0 0 0 0 0 0 0 468 1844 484 2201;2202;2203;2204;2205 2231;2232;2233;2234;2235 2231 5 AAYLQETGKPLDETLKK DILTKRNNAQRQQIKAAYLQETGKPLDETL YLQETGKPLDETLKKALTGHLEEVVLALLK K A A K K A 2 0 0 1 0 1 2 1 0 0 3 3 0 0 1 0 2 0 1 0 0 0 17 2 1904.0255 P04083;Q5T3N1;Q5T3N0 P04083 82 98 ANXA1 Annexin A1;Annexin yes no 2;3;4 4.3463E-15 169.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 8 8 3 4 1 1 1.0856 1.0549 20.773 25 Median 0.98679 1.0553 20.289 8 0 Median 1.0296 1.0212 24.468 8 0 Median 1.1341 1.1705 10.354 3 0 Median 1.1199 1.0571 10.493 4 0 Median 1.45 1.5864 NaN 1 0 Median 1.1537 0.99015 NaN 1 0 Median 1031900000 470390000 561540000 766230000 344850000 421370000 126020000 58871000 67153000 109590000 53639000 55948000 24081000 11056000 13025000 5214700 1691600 3523100 800910 282740 518170 469 1844 485 2206;2207;2208;2209;2210;2211;2212;2213;2214;2215;2216;2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230 2236;2237;2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270 2243 35 AAYLSDPR TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK TMSQEEKAAYLSDPRAPPCEYKDWLTKMSG K A A P R A 2 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 891.44503 P78527 P78527 3826 3833 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.010382 58.981 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.81576 0.85682 20.577 5 Median 0.79937 0.79957 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77365 0.81801 NaN 1 0 Median 1.2576 1.0949 NaN 1 0 Median 0.81576 0.85682 NaN 1 0 Median 1.5315 1.2748 NaN 1 0 Median 20682000 11164000 9518000 5395300 3123700 2271600 0 0 0 8412300 4886600 3525700 1923600 825580 1098000 2864500 1464100 1400400 2086500 864230 1222300 470 2647 486 2231;2232;2233;2234;2235 2271;2272;2273;2274;2275;2276;2277;2278 2277 8 AAYNLVR ______________________________ KIDKEACRAAYNLVRDDGSAVIWVTFKYDG R A A V R D 2 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 805.44464 Q14019 Q14019 12 18 COTL1 Coactosin-like protein yes yes 2 0.0022429 126.05 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2396 1.1411 18.872 5 Median 1.2834 1.2659 14.679 2 0 Median 1.1218 0.9569 NaN 1 0 Median 1.3958 1.4142 NaN 1 0 Median 1.2396 0.97735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48239000 21952000 26287000 12723000 5663500 7059900 32145000 14899000 17246000 2019000 792880 1226100 1351500 596440 755100 0 0 0 0 0 0 471 2853 487 2236;2237;2238;2239;2240 2279;2280;2281;2282;2283;2284 2283 6 AAYNPGQAVPWNAVK VKGRLPQLGEKVLVKAAYNPGQAVPWNAVK AAYNPGQAVPWNAVKVQTLSNQPLLKSPAP K A A V K V 4 0 2 0 0 1 0 1 0 0 0 1 0 0 2 0 0 1 1 2 0 0 15 0 1584.8049 Q8N163;E5RFJ3;H0YC69;E5RGU7;H0YC58 Q8N163 98 112 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.00012744 68.76 By MS/MS By matching By MS/MS By matching 1 2 3 3 0.70876 0.72782 24.556 9 Median 0.70876 0.6853 NaN 1 0 Median 1.0037 0.86534 24.474 2 0 Median 0.56679 0.6048 15.456 3 3 Median 0.96294 0.80125 34.835 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57777000 33039000 24737000 12927000 7794800 5132400 3131100 1544900 1586300 40957000 23269000 17687000 761880 430460 331420 0 0 0 0 0 0 472 3354 488 2241;2242;2243;2244;2245;2246;2247;2248;2249 2285;2286;2287;2288;2289 2287 5 AAYPDLENPPLLVTPSQQAK NIISRLQEVFGHAIKAAYPDLENPPLLVTP LENPPLLVTPSQQAKFGDYQCNSAMGISQM K A A A K F 3 0 1 1 0 2 1 0 0 0 3 1 0 0 4 1 1 0 1 1 0 0 20 0 2151.1212 P54136;E5RJM9 P54136 90 109 RARS Arginine--tRNA ligase, cytoplasmic yes no 2;3 0.035761 25.718 By MS/MS By matching 2 1 0.64229 0.56368 5.3425 3 Median 0.61442 0.58834 6.6983 2 1 Median 0.65278 0.56368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11965000 6948500 5016400 9735500 5781400 3954100 2229400 1167100 1062400 0 0 0 0 0 0 0 0 0 0 0 0 473 2480 489 2250;2251;2252 2290;2291 2290 2 AAYQVAALPK NEIYKQYFKSNFPARAAYQVAALPKGSRIE NFPARAAYQVAALPKGSRIEIEAVAIQGPL R A A P K G 4 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1030.5811 P52758;H0YBX3;H0YB34 P52758 108 117 HRSP12 Ribonuclease UK114 yes no 2 0.00034691 95.531 By MS/MS By MS/MS 1 2 1.1621 0.97212 21.732 3 Median 1.0601 0.95625 NaN 1 0 Median 1.4109 1.1684 26.015 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109130000 46676000 62449000 45164000 22038000 23127000 63961000 24639000 39322000 0 0 0 0 0 0 0 0 0 0 0 0 474 2458 490 2253;2254;2255 2292;2293;2294;2295;2296 2293 5 AAYWEEEPAEVRR DGGRYDVYLYDRIRKAAYWEEEPAEVRRCT RKAAYWEEEPAEVRRCTWFYKGDTDSRFIP K A A R R C 3 2 0 0 0 0 4 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 13 1 1604.7583 Q9Y6Y8;A0A0C4DH82;H7C4C4;H7C0V8 Q9Y6Y8 330 342 SEC23IP SEC23-interacting protein yes no 3 0.059871 20.857 By MS/MS 1 0.6829 0.75871 NaN 1 Median 0.6829 0.75871 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3848800 2171400 1677400 3848800 2171400 1677400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 475 4502 491 2256 2297 2297 1 ACADAGLLDESFLR LKRCKTQLKKLVRCKACADAGLLDESFLRR KACADAGLLDESFLRRCLNFYGLLIQLLLR K A C L R R 3 1 0 2 1 0 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 14 0 1536.7242 O95155 O95155 828 841 UBE4B Ubiquitin conjugation factor E4 B yes yes 2 0.03822 25.386 By MS/MS 1 1.0485 1.0566 NaN 1 Median 1.0485 1.0566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121030000 61373000 59661000 121030000 61373000 59661000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 476 1748 492 2257 2298 2298 1 ACAELHQNVNVK FPDEFHLQTLNPFLRACAELHQNVNVKNII FLRACAELHQNVNVKNIIIALIDRLALFAH R A C V K N 2 0 2 0 1 1 1 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1381.6772 Q96QK1 Q96QK1 285 296 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2;3 4.9695E-06 114.84 By MS/MS 2 1.1616 1.0229 14.749 2 Median NaN NaN NaN 0 0 Median 1.1616 1.0229 14.749 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5671700 2689400 2982300 0 0 0 5671700 2689400 2982300 0 0 0 0 0 0 0 0 0 0 0 0 477 3722 493 2258;2259 2299;2300;2301;2302 2302 4 ACANPAAGSVILLENLR DVLFLKDCVGPEVEKACANPAAGSVILLEN ANPAAGSVILLENLRFHVEEEGKGKDASGN K A C L R F 4 1 2 0 1 0 1 1 0 1 3 0 0 0 1 1 0 0 0 1 0 0 17 0 1767.9302 P00558 P00558 107 123 PGK1 Phosphoglycerate kinase 1 yes yes 2 3.8696E-13 120.14 By MS/MS By MS/MS 1 2 1.1404 0.96162 5.0598 3 Median 0.91015 0.90771 NaN 1 0 Median 1.1462 0.98259 3.0518 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23206000 10268000 12938000 3170200 1792700 1377400 20036000 8475600 11560000 0 0 0 0 0 0 0 0 0 0 0 0 478 1824 494 2260;2261;2262 2303;2304;2305;2306;2307 2306 5 ACGLNFADLMAR APPAPGPGQLTLRLRACGLNFADLMARQGL RLRACGLNFADLMARQGLYDRLPPLPVTPG R A C A R Q 3 1 1 1 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 0 0 0 12 0 1337.622 Q99536;K7ERT7 Q99536 85 96 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.010147 37.191 By matching By MS/MS 1 1 1.2833 1.1949 3.7288 2 Median 1.2105 1.2268 NaN 1 0 Median 1.3605 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1619500 780480 839050 276480 149370 127110 1343100 631110 711940 0 0 0 0 0 0 0 0 0 0 0 0 479 3750 495 2263;2264 2308 2308 1 ACGVSRPVIACSVTIK NVPYVFVRSKQALGRACGVSRPVIACSVTI CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R A C I K E 2 1 0 0 2 0 0 1 0 2 0 1 0 0 1 2 1 0 0 3 0 0 16 1 1716.9015 P55769 P55769 92 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2;3 7.7746E-09 120.96 By MS/MS By MS/MS By matching 2 2 1 1.1021 1.0259 22.618 5 Median NaN NaN NaN 0 0 Median 1.1444 1.0103 5.3196 2 1 Median 0.82281 0.85209 26.256 2 0 Median NaN NaN NaN 0 0 Median 1.1275 1.3303 NaN 1 0 Median NaN NaN NaN 0 0 Median 62921000 29944000 32977000 0 0 0 28983000 12558000 16426000 33618000 17208000 16409000 0 0 0 320070 178300 141770 0 0 0 480 2501 496 2265;2266;2267;2268;2269 2309;2310;2311;2312;2313;2314 2313 6 ACLDTAVENMPSLK EDPLLSGLLDSPALKACLDTAVENMPSLKM KACLDTAVENMPSLKMKVVEVLAGHGHLYS K A C L K M 2 0 1 1 1 0 1 0 0 0 2 1 1 0 1 1 1 0 0 1 0 0 14 0 1547.7324 P49327;A0A0U1RQF0 P49327 1226 1239 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.052059 35.414 By MS/MS 1 0.9134 0.79929 NaN 1 Median NaN NaN NaN 0 0 Median 0.9134 0.79929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6202200 3453100 2749100 0 0 0 6202200 3453100 2749100 0 0 0 0 0 0 0 0 0 0 0 0 481 2377 497 2270 2315 2315 1 ACQSIYPLHDVFVR VNKLIPDSIGKDIEKACQSIYPLHDVFVRK KACQSIYPLHDVFVRKVKMLKKPKFELGKL K A C V R K 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 2 0 0 14 0 1703.8454 P61247;D6RG13;H0Y9Y4;D6RAT0;D6RB09;D6R9B6 P61247 200 213 RPS3A 40S ribosomal protein S3a yes no 2;3 9.3031E-06 91.03 By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 2 0.95029 0.85971 26.187 9 Median 0.89482 0.83757 8.8896 2 0 Median 1.0307 0.85497 9.1038 3 0 Plateau 0.89709 0.87082 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.311 1.3932 NaN 1 0 Median 1.0244 0.90203 51.963 2 0 Median 87482000 44122000 43361000 34473000 18536000 15937000 49128000 23584000 25544000 1908700 1085500 823230 0 0 0 1291900 577500 714360 681320 338860 342460 482 2553 498 2271;2272;2273;2274;2275;2276;2277;2278;2279 2316;2317;2318;2319;2320 2319 5 ACTILLR GDEYFTFITDCKDPKACTILLRGASKEILS ITDCKDPKACTILLRGASKEILSEVERNLQ K A C L R G 1 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 845.47931 P49368;B4DUR8 P49368 371 377 CCT3 T-complex protein 1 subunit gamma yes no 2 0.041123 44.531 By MS/MS By matching 2 1 1.221 1.2789 16.94 3 Median NaN NaN NaN 0 0 Median 1.2945 1.1514 22.37 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.221 1.2789 NaN 1 0 Median NaN NaN NaN 0 0 Median 9791000 4240800 5550200 0 0 0 5087800 2133600 2954200 0 0 0 0 0 0 4703200 2107200 2596000 0 0 0 483 2379 499 2280;2281;2282 2321;2322 2322 2 ACVSMLGVPVDPDTLHATLR LIQGLTEDMVTVLIRACVSMLGVPVDPDTL LGVPVDPDTLHATLRLCLRLTRDHKYAMMF R A C L R L 2 1 0 2 1 0 0 1 1 0 3 0 1 0 2 1 2 0 0 3 0 0 20 0 2151.0816 Q7Z6Z7 Q7Z6Z7 1761 1780 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.0018553 39.203 By MS/MS 2 0.96796 0.82271 4.6573 2 Median NaN NaN NaN 0 0 Median 0.96796 0.82271 4.6573 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984300 2393000 2591300 0 0 0 4984300 2393000 2591300 0 0 0 0 0 0 0 0 0 0 0 0 484 3253 500 2283;2284 2323;2324 2323 2 ACVVHGSDLK RLNIPVSQVNPRDAKACVVHGSDLKDMTSE PRDAKACVVHGSDLKDMTSEQLDDILKYHT K A C L K D 1 0 0 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1084.5335 P05023;B1AKY9;P50993;H0Y7C1 P05023 662 671 ATP1A1;ATP1A2 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 2 0.01267 51.346 By MS/MS 3 1.0106 0.86455 24.001 3 Median NaN NaN NaN 0 0 Median 1.0106 0.86455 24.001 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2047200 1164800 882360 0 0 0 2047200 1164800 882360 0 0 0 0 0 0 0 0 0 0 0 0 485 1857 501 2285;2286;2287 2325;2326;2327 2325 3 ACVVHGSDLKDMTSEQLDDILK RLNIPVSQVNPRDAKACVVHGSDLKDMTSE DLKDMTSEQLDDILKYHTEIVFARTSPQQK K A C L K Y 1 0 0 4 1 1 1 1 1 1 3 2 1 0 0 2 1 0 0 2 0 0 22 1 2473.1829 P05023 P05023 662 683 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 4 0.029626 13.188 By MS/MS 1 1.1877 1.129 NaN 1 Median NaN NaN NaN 0 0 Median 1.1877 1.129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2028700 885470 1143200 0 0 0 2028700 885470 1143200 0 0 0 0 0 0 0 0 0 0 0 0 486 1857 502 2288 2328 2328 1 ACYGVLR ESLRYKLLGGLAVRRACYGVLRFIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS R A C L R F 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 837.41671 P23396;E9PL09;H0YEU2 P23396 118 124 RPS3 40S ribosomal protein S3 yes no 2 0.014239 74.832 By MS/MS 1 0.95881 0.80241 NaN 1 Median NaN NaN NaN 0 0 Median 0.95881 0.80241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3185600 1438000 1747600 0 0 0 3185600 1438000 1747600 0 0 0 0 0 0 0 0 0 0 0 0 487 2112 503 2289 2329;2330 2330 2 ADAASSLTVDVTPPTAK PTSNAPSDPATTTAKADAASSLTVDVTPPT AASSLTVDVTPPTAKAPTTVEDRVGDSTPV K A D A K A 4 0 0 2 0 0 0 0 0 0 1 1 0 0 2 2 3 0 0 2 0 0 17 0 1642.8414 Q9H8Y8 Q9H8Y8 404 420 GORASP2 Golgi reassembly-stacking protein 2 yes yes 2 4.1743E-05 63.727 By MS/MS 1 0.90592 0.83797 NaN 1 Median 0.90592 0.83797 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15613000 10094000 5518900 15613000 10094000 5518900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 488 3991 504 2290 2331 2331 1 ADAEEEAATR WARFGRTLAEINANRADAEEEAATRIPA__ INANRADAEEEAATRIPA____________ R A D T R I 4 1 0 1 0 0 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1061.4625 Q13409 Q13409 626 635 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes yes 2 0.00067062 111.46 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0434 0.97998 4.2184 4 Median 0.94805 0.948 NaN 1 0 Median 1.071 0.98105 NaN 1 0 Median 1.0165 1.0482 NaN 1 0 Median 1.1467 0.97892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8191400 3902200 4289300 423600 194950 228650 564860 246140 318720 6605900 3180500 3425400 597060 280580 316470 0 0 0 0 0 0 489 2811 505 2291;2292;2293;2294 2332;2333;2334;2335;2336;2337 2333 6 ADAEGESDLENSR RILAQATSDLVNAIKADAEGESDLENSRKL IKADAEGESDLENSRKLLSAAKILADATAK K A D S R K 2 1 1 2 0 0 3 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 13 0 1391.5801 Q9Y490 Q9Y490 842 854 TLN1 Talin-1 yes yes 2 7.4802E-07 103.34 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.2129 1.1365 10.194 5 Median 0.94683 0.95133 NaN 1 0 Median 1.3075 1.1043 9.9079 2 0 Median 1.0913 1.2131 NaN 1 0 Median 1.2989 1.1365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6547100 2876000 3671100 1411100 713820 697320 3480500 1440100 2040300 1210200 544890 665280 445370 177160 268210 0 0 0 0 0 0 490 4441 506 2295;2296;2297;2298;2299 2338;2339;2340;2341 2339 4 ADAEYYAAHK SEIEDAAFLAREKAKADAEYYAAHKYATSN REKAKADAEYYAAHKYATSNKHKLTPEYLE K A D H K Y 4 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 0 10 0 1137.5091 O75477;B0QZ43 O75477 260 269 ERLIN1 Erlin-1 yes no 2 0.0095388 45.081 By MS/MS 1 1.087 0.9257 NaN 1 Median NaN NaN NaN 0 0 Median 1.087 0.9257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1059200 504920 554230 0 0 0 1059200 504920 554230 0 0 0 0 0 0 0 0 0 0 0 0 491 1675 507 2300 2342 2342 1 ADAHLGSSSVALPK LDPDPSHSPSDKVGRADAHLGSSSVALPKE RADAHLGSSSVALPKEASDGTGASQEPPTT R A D P K E 3 0 0 1 0 0 0 1 1 0 2 1 0 0 1 3 0 0 0 1 0 0 14 0 1351.7096 Q8NFQ8 Q8NFQ8 128 141 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 3 0.0003551 49.333 By MS/MS 2 1.0196 0.87736 NaN 1 Median NaN NaN NaN 0 0 Median 1.0196 0.87736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2984300 1940600 1043800 0 0 0 2984300 1940600 1043800 0 0 0 0 0 0 0 0 0 0 0 0 492 3440 508 2301;2302 2343;2344 2343 2 ADALQAGASQFETSAAK KVLERDQKLSELDDRADALQAGASQFETSA ALQAGASQFETSAAKLKRKYWWKNCKMWAI R A D A K L 6 0 0 1 0 2 1 1 0 0 1 1 0 1 0 2 1 0 0 0 0 0 17 0 1664.8006 J3QRU4;F8WCA0;L7N2F9;P63027;K7ENK9;K7EKX0;Q15836 Q15836 50 66 VAMP2;VAMP3 Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 3 no no 2;3 5.0227E-14 121.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 1 1.2142 1.056 11.47 10 Median 1.0165 0.93806 19.18 2 0 Median 1.2686 1.0399 10.324 5 0 Median 1.0609 1.0428 10.02 2 1 Median 1.3216 1.0723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171500000 76935000 94562000 55176000 25401000 29775000 85401000 37160000 48241000 28774000 13448000 15326000 2146100 926010 1220100 0 0 0 0 0 0 493 2974;1095 509 2303;2304;2305;2306;2307;2308;2309;2310;2311;2312 2345;2346;2347;2348;2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362 2349 18 ADANKAEVPGATGGDSPHLQPAEPPGEPR ______________________________ DSPHLQPAEPPGEPRREPHPAEAEKQQPQH M A D P R R 5 1 1 2 0 1 3 4 1 0 1 1 0 0 6 1 1 0 0 1 0 0 29 1 2864.3689 A0A0A0MQW0;A0A0A0MR39;Q9P2K5;A0A087WWC8 A0A0A0MQW0 2 30 MYEF2 Myelin expression factor 2 yes no 3 2.1971E-09 49.793 By MS/MS 1 0.28633 0.31525 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28633 0.31525 NaN 1 1 Median NaN NaN NaN 0 0 Median 4245300 3571300 674000 0 0 0 0 0 0 0 0 0 0 0 0 4245300 3571300 674000 0 0 0 494 149 510 2313 2363 2363 1 ADAPVALVVHMAPASVLVDSR QPICENATFQRYQGKADAPVALVVHMAPAS LVVHMAPASVLVDSRYQQWMERFGPDTQHL K A D S R Y 5 1 0 2 0 0 0 0 1 0 2 0 1 0 2 2 0 0 0 5 0 0 21 0 2117.1303 Q9BQ52;G5E9D5;H7C2I4 Q9BQ52 333 353 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 3 0.00013597 35.834 By MS/MS By MS/MS 1 1 0.88738 0.81432 13.053 2 Median 0.91995 0.89306 NaN 1 0 Median 0.85596 0.74252 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5914900 3220800 2694100 3376100 1787700 1588300 2538800 1433100 1105700 0 0 0 0 0 0 0 0 0 0 0 0 495 3782 511 2314;2315 2364;2365;2366 2364 3 ADATNVNNWHWTER AKWGEGDPRWIVEERADATNVNNWHWTERD RADATNVNNWHWTERDASNWSTDKLKTLFL R A D E R D 2 1 3 1 0 0 1 0 1 0 0 0 0 0 0 0 2 2 0 1 0 0 14 0 1712.7655 O95433;G3V3W9 O95433 17 30 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2;3 1.0522E-05 125.72 By MS/MS By matching By matching By matching 2 2 1 1 1.088 1.0385 27.173 6 Median 1.0825 1.0844 2.183 2 0 Median 1.1279 0.97224 5.3985 2 0 Median 1.4629 1.5919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78742 0.68674 NaN 1 0 Median 80609000 36828000 43781000 68825000 31736000 37089000 2144200 1000700 1143600 9071700 3766200 5305500 0 0 0 0 0 0 568860 325210 243650 496 1773 512 2316;2317;2318;2319;2320;2321 2367;2368;2369 2369 3 ADAVWNK YNLLKLYKINGDWQRADAVWNKIQEENVIP KINGDWQRADAVWNKIQEENVIPREKTLRL R A D N K I 2 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 7 0 802.39735 P42704 P42704 974 980 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.030589 64.803 By MS/MS 1 1.306 1.1094 NaN 1 Median NaN NaN NaN 0 0 Median 1.306 1.1094 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6076400 2452700 3623800 0 0 0 6076400 2452700 3623800 0 0 0 0 0 0 0 0 0 0 0 0 497 2315 513 2322 2370 2370 1 ADAWEEIRR ______________________________ ______________________________ M A D R R L 2 2 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 9 1 1144.5625 O94874 O94874 2 10 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.0045032 53.166 By MS/MS By matching By matching 1 1 1 0.95919 0.94185 2.4976 3 Median 0.95919 0.98345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92997 0.94185 NaN 1 0 Median 1.1743 0.94178 NaN 1 0 Median 68029000 33826000 34203000 9277600 4475100 4802500 0 0 0 0 0 0 0 0 0 43952000 22381000 21571000 14800000 6969700 7830400 498 1732 514 2323;2324;2325 2371;2372 2371 2 ADAYTVELENAESR LNEISGQSVAEQLQKADAYTVELENAESRV KADAYTVELENAESRVAKLRDEGERLHLPY K A D S R V 3 1 1 1 0 0 3 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 14 0 1566.7162 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4675 4688 SYNE2 Nesprin-2 yes no 2 0.00010931 82.171 By matching By matching By MS/MS 1 1 1 0.68831 0.72318 31.227 3 Median 0.42501 0.45777 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78711 0.83161 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68831 0.72318 NaN 1 0 Median NaN NaN NaN 0 0 Median 19041000 11658000 7382600 6260900 4251100 2009800 0 0 0 9276300 5300900 3975400 0 0 0 3503700 2106300 1397400 0 0 0 499 3521 515 2326;2327;2328 2373 2373 1 ADDADEFGYSR AKSARLNLWRYGDFRADDADEFGYSR____ GDFRADDADEFGYSR_______________ R A D S R - 2 1 0 3 0 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 11 0 1244.4946 Q7KZF4 Q7KZF4 900 910 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 5.6726E-05 152.97 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1059 1.0177 8.1191 5 Median 0.99181 0.95529 NaN 1 0 Median 1.1628 1.0126 0.71894 2 0 Median 1.0228 1.0876 NaN 1 0 Median 1.3909 1.1797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46275000 20467000 25809000 13338000 6667800 6669900 17608000 7175900 10432000 7880900 3647100 4233800 7448400 2975900 4472500 0 0 0 0 0 0 500 3214 516 2329;2330;2331;2332;2333 2374;2375;2376;2377;2378;2379;2380;2381 2381 8 ADDGRPFPQVIK CIGGVILFHETLYQKADDGRPFPQVIKSKG YQKADDGRPFPQVIKSKGGVVGIKVDKGVV K A D I K S 1 1 0 2 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 12 1 1341.7041 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 J3KPS3 88 99 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 0.00026518 94.692 By MS/MS By MS/MS By MS/MS 2 2 4 0.95168 1.0401 34.661 8 Median 0.94537 1.0134 0.16085 2 0 Median 0.91706 0.8712 1.1281 2 0 Median 1.2154 1.3721 37.438 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 413360000 170780000 242580000 156280000 78846000 77434000 96172000 49907000 46265000 160910000 42022000 118890000 0 0 0 0 0 0 0 0 0 501 1310 517 2334;2335;2336;2337;2338;2339;2340;2341 2382;2383;2384;2385;2386;2387;2388;2389;2390;2391;2392;2393;2394 2394 13 ADDKLIAEEGVDSLNVK NFLRFQLTMRLRSIKADDKLIAEEGVDSLN DKLIAEEGVDSLNVKELQAACRARGMRALG K A D V K E 2 0 1 3 0 0 2 1 0 1 2 2 0 0 0 1 0 0 0 2 0 0 17 1 1814.9262 O95202 O95202 357 373 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 0.00051677 48.053 By MS/MS 1 0.45487 0.46669 NaN 1 Median 0.45487 0.46669 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17225000 11133000 6092300 17225000 11133000 6092300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 502 1754 518 2342 2395 2395 1 ADDLGKGGNEESTK GDHCIIGRTLVVHEKADDLGKGGNEESTKT KADDLGKGGNEESTKTGNAGSRLACGVIGI K A D T K T 1 0 1 2 0 0 2 3 0 0 1 2 0 0 0 1 1 0 0 0 0 0 14 1 1419.6478 P00441;H7BYH4 P00441 124 137 SOD1 Superoxide dismutase [Cu-Zn] yes no 2;3 0.00030001 54.898 By matching By MS/MS By matching 2 2 1 1.039 1.0251 6.2416 5 Median 1.0159 1.0345 3.1312 2 0 Median 1.1602 1.0259 0.11704 2 0 Median NaN NaN NaN 0 0 Median 1.0028 0.90031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8682700 4048700 4634000 1544600 715490 829070 6996800 3270300 3726500 0 0 0 141400 62877 78526 0 0 0 0 0 0 503 1820 519 2343;2344;2345;2346;2347 2396;2397;2398 2397 3 ADDLLPLGDQTQDGDFGSR RVKKIRKKEKEVVVRADDLLPLGDQTQDGD LPLGDQTQDGDFGSRLRGRGRRRVSEVEEE R A D S R L 1 1 0 5 0 2 0 3 0 0 3 0 0 1 1 1 1 0 0 0 0 0 19 0 2018.9181 O43290 O43290 420 438 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2;3 7.2103E-08 79.004 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 0.98107 1.0416 20.32 7 Median 1.2449 1.2268 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.7805 0.82854 15.733 3 0 Median 1.2372 1.049 33.742 2 0 Median 0.98107 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median 25731000 12816000 12915000 2223100 931660 1291400 0 0 0 20360000 10270000 10089000 897690 436240 461450 2250200 1177200 1073100 0 0 0 504 1563 520 2348;2349;2350;2351;2352;2353;2354 2399;2400;2401;2402;2403;2404;2405;2406 2401 8 ADDPLRLDQELQQPQTQEK PVEQDSSQPSLPLVRADDPLRLDQELQQPQ LRLDQELQQPQTQEKTSNSLTEDSKMANAK R A D E K T 1 1 0 3 0 5 2 0 0 0 3 1 0 0 2 0 1 0 0 0 0 0 19 1 2251.1081 A6NNK5;Q12888;C9JXV0;H7C3N7 A6NNK5 845 863 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2;3 5.2875E-19 120.11 By MS/MS By MS/MS By matching 3 2 1 0.58625 0.67167 30.303 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50215 0.60144 27.682 3 1 Median 0.9596 0.90996 5.0188 2 0 Median 0.57868 0.65628 NaN 1 0 Median NaN NaN NaN 0 0 Median 59731000 37600000 22131000 0 0 0 0 0 0 54417000 34818000 19599000 2804300 1341300 1463000 2509900 1441300 1068600 0 0 0 505 530 521 2355;2356;2357;2358;2359;2360 2407;2408;2409;2410 2408 4 ADDPYAHLSK EGEGEEEEEEGGESKADDPYAHLSKKEKKK GGESKADDPYAHLSKKEKKKLKKQMEYERQ K A D S K K 2 0 0 2 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 0 0 0 10 0 1115.5247 Q8NE71;Q5STZ8 Q8NE71 246 255 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0072129 48.091 By MS/MS 2 0.8339 0.7185 19.601 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8339 0.7185 19.601 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2110000 1067400 1042600 0 0 0 0 0 0 0 0 0 2110000 1067400 1042600 0 0 0 0 0 0 506 3427 522 2361;2362 2411;2412 2412 2 ADDYIEITGAGGK VGNIIDTMITDAFLKADDYIEITGAGGKKY LKADDYIEITGAGGKKYRISTAIDDMEAYT K A D G K K 2 0 0 2 0 0 1 3 0 2 0 1 0 0 0 0 1 0 1 0 0 0 13 0 1308.6198 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90 Q9Y3Z3 393 405 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.044255 41.704 By MS/MS 1 1.3489 1.1634 NaN 1 Median NaN NaN NaN 0 0 Median 1.3489 1.1634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2546500 1099200 1447300 0 0 0 2546500 1099200 1447300 0 0 0 0 0 0 0 0 0 0 0 0 507 4436 523 2363 2413 2413 1 ADEASELACPTPK VRQLTLRKLQELSSKADEASELACPTPKED SKADEASELACPTPKEDGLAQQQTQLNLRS K A D P K E 3 0 0 1 1 0 2 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1387.6289 P49327;A0A0U1RQF0 P49327 2194 2206 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 3.3165E-05 103.08 By MS/MS 2 1.0792 0.95815 2.575 2 Median NaN NaN NaN 0 0 Median 1.0792 0.95815 2.575 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15744000 7264800 8479100 0 0 0 15744000 7264800 8479100 0 0 0 0 0 0 0 0 0 0 0 0 508 2377 524 2364;2365 2414;2415;2416 2415 3 ADEDPALFQSVK IDIADRSQVEPADYKADEDPALFQSVKTKR DYKADEDPALFQSVKTKRGPLGPNWKKELA K A D V K T 2 0 0 2 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 12 0 1318.6405 P48739;A0A0A0MSW4;B3KYB6 P48739 156 167 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 2 0.0044584 43.512 By MS/MS By matching 1 1 1.0437 0.878 41.977 2 Median NaN NaN NaN 0 0 Median 0.77773 0.65251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4006 1.1814 NaN 1 0 Median 60347000 25637000 34710000 0 0 0 5199000 2944900 2254100 0 0 0 0 0 0 0 0 0 55148000 22692000 32456000 509 2368 525 2366;2367 2417;2418 2417 2 ADEEKLPPGWEK ______________________________ ______________________________ M A D E K R 1 0 0 1 0 0 3 1 0 0 1 2 0 0 2 0 0 1 0 0 0 0 12 1 1397.6827 Q13526;K7EMU7;O15428 Q13526 2 13 PIN1;PIN1P1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1;Putative PIN1-like protein yes no 2 3.6615E-05 93.096 By MS/MS By MS/MS By matching By matching 1 2 2 1 0.77414 0.77783 111.58 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85838 0.9503 28.322 2 0 Median 0.21426 0.23096 156.51 2 0 Median NaN NaN NaN 0 0 Median 1.0116 0.99087 NaN 1 0 Median 47622000 25729000 21892000 0 0 0 0 0 0 35795000 18692000 17103000 9380200 5825900 3554300 0 0 0 2446100 1211400 1234800 510 2822 526 2368;2369;2370;2371;2372;2373 2419;2420;2421;2422;2423 2420 5 ADEEKLPPGWEKR ______________________________ ______________________________ M A D K R M 1 1 0 1 0 0 3 1 0 0 1 2 0 0 2 0 0 1 0 0 0 0 13 2 1553.7838 Q13526;K7EMU7;O15428 Q13526 2 14 PIN1;PIN1P1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1;Putative PIN1-like protein yes no 2 0.0081205 42.336 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 511 2822 527 2374 2424 2424 1 ADEELEALRR ______________________________ ______________________________ M A D R R Q 2 2 0 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1200.6099 O14737;K7ESJ4;Q3HM38;X6R2P6 O14737 2 11 PDCD5 Programmed cell death protein 5 yes no 2 0.00025741 111.95 By matching By matching By MS/MS 1 1 1 1.1068 1.2019 47.003 3 Plateau 0.79941 0.8139 NaN 1 0 Median 0.47594 0.47151 NaN 1 0 Median 1.1068 1.2019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19974000 9410900 10564000 1333500 541170 792330 539560 267640 271920 18101000 8602100 9499400 0 0 0 0 0 0 0 0 0 512 1491 528 2375;2376;2377 2425;2426 2426 2 ADEGISFR SDPKRTIAQDYGVLKADEGISFRGLFIIDD QDYGVLKADEGISFRGLFIIDDKGILRQIT K A D F R G 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 893.4243 Q06830;A0A0A0MSI0 Q06830 121 128 PRDX1 Peroxiredoxin-1 yes no 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 2 1 1 1 1.2843 1.196 14.745 11 Median 1.2717 1.2271 1.2388 2 0 Median 1.233 1.0327 12.064 4 0 Median 1.3401 1.3222 0.40357 2 0 Median 1.3161 1.0918 NaN 1 0 Median 1.2843 1.3544 NaN 1 0 Median 1.4738 1.196 NaN 1 0 Median 364810000 154180000 210640000 229620000 96581000 133040000 63789000 28048000 35740000 65592000 27161000 38431000 4078000 1683500 2394500 591970 225790 366180 1145400 477740 667690 513 2728 529 2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388 2427;2428;2429;2430;2431;2432;2433;2434;2435;2436;2437;2438;2439 2432 13 ADEHVIDQGDDGDNFYVIER QLSQVLDAMFERIVKADEHVIDQGDDGDNF IDQGDDGDNFYVIERGTYDILVTKDNQTRS K A D E R G 1 1 1 5 0 1 2 2 1 2 0 0 0 1 0 0 0 0 1 2 0 0 20 0 2306.0087 P13861;H7C1L0 P13861 162 181 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 3 8.796E-17 94.384 By MS/MS 2 0.75214 0.7437 3.3492 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75214 0.7437 3.3492 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19132000 11097000 8035400 0 0 0 0 0 0 19132000 11097000 8035400 0 0 0 0 0 0 0 0 0 514 1998 530 2389;2390 2440;2441 2440 2 ADELNQTGQILVEQMGK KLKALEKEQRERIPRADELNQTGQILVEQM ELNQTGQILVEQMGKEGLPTEEIKNVLEKV R A D G K E 1 0 1 1 0 3 2 2 0 1 2 1 1 0 0 0 1 0 0 1 0 0 17 0 1872.9251 P46939 P46939 745 761 UTRN Utrophin yes yes 2 0.022279 37.426 By MS/MS 1 0.73626 0.73796 NaN 1 Median 0.73626 0.73796 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13069000 7192200 5876700 13069000 7192200 5876700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 515 2349 531 2391 2442 2442 1 ADEWLMK ADFCIIHYAGKVDYKADEWLMKNMDPLNDN YAGKVDYKADEWLMKNMDPLNDNIATLLHQ K A D M K N 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 7 0 891.41604 P35579;P35580 P35579 581 587 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.017766 64.776 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1.1186 0.96698 14.347 7 Median 1.2276 1.1816 NaN 1 0 Median 1.0004 0.8954 21.041 2 0 Median 0.74343 0.82636 NaN 1 0 Median 1.1359 1.0211 NaN 1 0 Median 0.8984 0.9498 NaN 1 0 Median 1.1186 0.96698 NaN 1 0 Median 26080000 11543000 14537000 6396600 2663900 3732700 14948000 6530900 8417000 1857500 1060000 797500 234920 106020 128900 2361400 1064500 1296900 282000 118140 163860 516 2244;2245 532 2392;2393;2394;2395;2396;2397;2398 2443;2444;2445;2446 2446 4 ADFAQACQDAGVR NVDAVHPGYGFLSERADFAQACQDAGVRFI ERADFAQACQDAGVRFIGPSPEVVRKMGDK R A D V R F 4 1 0 2 1 2 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1407.6201 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 125 137 PC Pyruvate carboxylase, mitochondrial yes no 2 0.0040594 42.001 By MS/MS 1 1.0887 0.93094 NaN 1 Median NaN NaN NaN 0 0 Median 1.0887 0.93094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2588900 1079400 1509500 0 0 0 2588900 1079400 1509500 0 0 0 0 0 0 0 0 0 0 0 0 517 1967 533 2399 2447 2447 1 ADFCIIHYAGK GTHPKFQKPKQLKDKADFCIIHYAGKVDYK LKDKADFCIIHYAGKVDYKADEWLMKNMDP K A D G K V 2 0 0 1 1 0 0 1 1 2 0 1 0 1 0 0 0 0 1 0 0 0 11 0 1293.6176 P35579;P35580 P35579 566 576 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.0014477 58.981 By MS/MS 2 1.1924 1.0568 11.827 2 Median NaN NaN NaN 0 0 Median 1.1924 1.0568 11.827 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10613000 4853700 5758900 0 0 0 10613000 4853700 5758900 0 0 0 0 0 0 0 0 0 0 0 0 518 2244;2245 534 2400;2401 2448;2449;2450;2451 2449 4 ADFDDRVSDEEKVR ______________________________ MADFDDRVSDEEKVRIAAKFITHAPPGEFN M A D V R I 1 2 0 4 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 14 2 1679.7751 P52907 P52907 2 15 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 4.8148E-05 76.588 By MS/MS 1 0.91059 0.95436 NaN 1 Median 0.91059 0.95436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9298700 4960300 4338400 9298700 4960300 4338400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 519 2461 535 2402 2452 2452 1 ADFDNTVAIHPTSSEELVTLR MLQGFAVAVKMGATKADFDNTVAIHPTSSE VAIHPTSSEELVTLR_______________ K A D L R - 2 1 1 2 0 0 2 0 1 1 2 0 0 1 1 2 3 0 0 2 0 0 21 0 2314.1441 P00390 P00390 502 522 GSR Glutathione reductase, mitochondrial yes yes 3 4.1742E-12 72.644 By MS/MS By matching By matching 1 1 1 0.90708 0.87167 7.3973 3 Plateau 0.90708 0.87856 NaN 1 0 Median 0.94857 0.81506 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86831 0.75774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10144000 5429100 4714500 7291800 4018300 3273400 2453500 1192200 1261300 0 0 0 398370 218610 179760 0 0 0 0 0 0 520 1817 536 2403;2404;2405 2453;2454 2454 2 ADFDTYDDR ______________________________ ______________________________ M A D D R A 1 1 0 4 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 1116.436 Q15056 Q15056 2 10 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.00092842 91.318 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1511 1.1055 17.512 5 Median 1.2353 1.198 21.721 2 0 Median NaN NaN NaN 0 0 Median 1.1511 1.1055 NaN 1 0 Median 1.1421 0.93998 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6429 1.3673 NaN 1 0 Median 33855000 15514000 18341000 8108400 4024700 4083700 0 0 0 25150000 11233000 13917000 504810 220840 283970 0 0 0 92030 35358 56672 521 2922 537 2406;2407;2408;2409;2410 2455;2456;2457 2457 3 ADFDTYDDRAYSSFGGGR ______________________________ DTYDDRAYSSFGGGRGSRGSAGGHGSRSQK M A D G R G 2 2 0 4 0 0 0 3 0 0 0 0 0 2 0 2 1 0 2 0 0 0 18 1 1998.8344 Q15056 Q15056 2 19 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 5.3428E-06 52.555 By MS/MS By matching By matching By matching 1 1 1 1 1.1442 1.4842 25.756 4 Linear 1.2898 1.3787 NaN 1 0 Median 0.88436 0.75106 NaN 1 0 Median 1.1332 1.1749 NaN 1 0 Median 1.1554 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4824200 1912900 2911300 3504400 1334500 2169900 209120 99831 109290 896340 387640 508700 214360 90931 123420 0 0 0 0 0 0 522 2922 538 2411;2412;2413;2414 2458 2458 1 ADFFEDENGQR QSVTMGYYKNEAKTKADFFEDENGQRWLCT AKTKADFFEDENGQRWLCTGDIGEFEPDGC K A D Q R W 1 1 1 2 0 1 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 11 0 1326.5477 O95573 O95573 548 558 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.00072571 63.816 By MS/MS 1 1.6921 1.6317 NaN 1 Median 1.6921 1.6317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4013400 1270000 2743400 4013400 1270000 2743400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 523 1780 539 2415 2459;2460 2459 2 ADFQGISPER LQFVCLRIQINPQNKADFQGISPERAFADF NPQNKADFQGISPERAFADFLFASTILHLV K A D E R A 1 1 0 1 0 1 1 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 10 0 1118.5356 F5GXX5;P61803 F5GXX5 55 64 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes no 2 0.00033827 104.2 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1.1068 0.91346 81.299 7 Median 0.93749 0.91346 NaN 1 0 Median 1.1122 0.94656 124.7 3 1 Median 0.97522 0.98161 12.134 2 0 Median 1.1334 0.8925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89476000 23604000 65872000 5013900 2424300 2589600 66508000 14365000 52143000 15711000 5887500 9823800 2242800 926800 1316000 0 0 0 0 0 0 524 1010 540 2416;2417;2418;2419;2420;2421;2422 2461;2462;2463;2464;2465;2466;2467;2468;2469;2470 2465 10 ADFSGMSQTDLSLSK VLRNLGMTDAFELGKADFSGMSQTDLSLSK ADFSGMSQTDLSLSKVVHKSFVEVNEEGTE K A D S K V 1 0 0 2 0 1 0 1 0 0 2 1 1 1 0 4 1 0 0 0 0 0 15 0 1585.7294 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12 A0A024QZX5 304 318 SERPINB6 Serpin B6 yes no 2 2.1918E-06 93.011 By MS/MS By matching 1 2 1.0481 0.96616 15.333 3 Median 1.0481 0.96616 NaN 1 0 Median 1.1473 0.98988 21.594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27888000 13306000 14582000 25737000 12459000 13278000 2150700 847120 1303600 0 0 0 0 0 0 0 0 0 0 0 0 525 1 541 2423;2424;2425 2471;2472 2471 2 ADFTVVAGDEGSSTTGGSSEENKGPSGSAVSR NLPQLKELYQLSKEKADFTVVAGDEGSSTT SSEENKGPSGSAVSRKAPSKPSASTKKAEG K A D S R K 3 1 1 2 0 0 3 6 0 0 0 1 0 1 1 7 3 0 0 3 0 0 32 1 3042.365 P49916 P49916 836 867 LIG3 DNA ligase 3 yes yes 3 1.8489E-75 156.92 By MS/MS By MS/MS 1 2 1.0075 0.96824 18.593 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65986 0.74613 NaN 1 0 Median 1.0717 1.0176 7.0324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67998000 30680000 37318000 0 0 0 0 0 0 41945000 19737000 22208000 26053000 10943000 15110000 0 0 0 0 0 0 526 2406 542 2426;2427;2428 2473;2474;2475;2476;2477;2478 2473 6 ADGATSDDLDLHDDR IQQQQNQLVWVSEGKADGATSDDLDLHDDR ADGATSDDLDLHDDRLSYLSAPGSEYSMYS K A D D R L 2 1 0 6 0 0 0 1 1 0 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1614.6758 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 793 807 TJP1 Tight junction protein ZO-1 yes no 3 0.031543 16.119 By MS/MS 2 0.81632 0.70734 2.6066 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81632 0.70734 2.6066 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1353000 740660 612320 0 0 0 0 0 0 0 0 0 1353000 740660 612320 0 0 0 0 0 0 527 104 543 2429;2430 2479 2479 1 ADGETILK AAARHSTLDFMLGAKADGETILKGLQSIFQ DFMLGAKADGETILKGLQSIFQEQGMAESV K A D L K G 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 845.44945 P52788 P52788 17 24 SMS Spermine synthase yes yes 2 0.0059586 73.26 By MS/MS 1 1.1464 0.9781 NaN 1 Median NaN NaN NaN 0 0 Median 1.1464 0.9781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7409300 3362200 4047100 0 0 0 7409300 3362200 4047100 0 0 0 0 0 0 0 0 0 0 0 0 528 2459 544 2431 2480 2480 1 ADGGTQVIDTK GYGKITGKNQVTATKADGGTQVIDTKNILI TATKADGGTQVIDTKNILIATGSEVTPFPG K A D T K N 1 0 0 2 0 1 0 2 0 1 0 1 0 0 0 0 2 0 0 1 0 0 11 0 1103.5459 E9PEX6;P09622 E9PEX6 144 154 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.00018809 109.42 By MS/MS By MS/MS By matching 1 1 1 1.0476 1.0478 12.629 3 Median 0.99422 0.94947 NaN 1 0 Median 1.4351 1.22 NaN 1 0 Median 1.0476 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9790800 4067800 5723000 3276100 1463800 1812300 6099200 2451100 3648100 415510 152830 262680 0 0 0 0 0 0 0 0 0 529 915 545 2432;2433;2434 2481;2482;2483 2483 3 ADGQVAELLLR ______________________________ ______________________________ M A D L R R 2 1 0 1 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1183.6561 Q9Y285;K7ER16;K7EK06 Q9Y285 2 12 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.00014592 87.913 By MS/MS By matching By matching 2 2 1 1.1794 1.1087 5.9253 5 Median 1.1013 1.0694 5.1025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2796 1.1209 6.4721 2 0 Median 1.1794 1.1853 NaN 1 0 Median NaN NaN NaN 0 0 Median 7980100 3646000 4334100 6883200 3152500 3730700 0 0 0 0 0 0 318280 128050 190230 778670 365490 413180 0 0 0 530 4379 546 2435;2436;2437;2438;2439 2484;2485 2485 2 ADGVPVYLK AGKNKVPELQKFFQKADGVPVYLKRGLPDQ QKFFQKADGVPVYLKRGLPDQMLYRTTMAL K A D L K R 1 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 9 0 960.52803 O14548 O14548 70 78 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes yes 2 0.032793 35.618 By MS/MS By MS/MS 1 1 0.80611 0.70195 10.944 2 Median 0.70874 0.64968 NaN 1 0 Median 0.91686 0.75843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8971200 4705200 4266100 4275700 2296600 1979100 4695500 2408500 2287000 0 0 0 0 0 0 0 0 0 0 0 0 531 1483 547 2440;2441 2486;2487 2486 2 ADGVPVYLKR AGKNKVPELQKFFQKADGVPVYLKRGLPDQ KFFQKADGVPVYLKRGLPDQMLYRTTMALT K A D K R G 1 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 10 1 1116.6291 O14548 O14548 70 79 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes yes 2 0.0010598 71.692 By MS/MS By MS/MS 1 1 1.0163 0.94563 4.2219 2 Median 0.93598 0.91781 NaN 1 0 Median 1.1035 0.97428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18964000 8903100 10061000 5220800 2705300 2515500 13743000 6197700 7545300 0 0 0 0 0 0 0 0 0 0 0 0 532 1483 548 2442;2443 2488;2489;2490 2490 3 ADGYVLEGK KLLACIASRPGQCGRADGYVLEGKELEFYL PGQCGRADGYVLEGKELEFYLRKIKARKGK R A D G K E 1 0 0 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 0 950.47091 Q5JR95;P62241 Q5JR95 165 173 RPS8 40S ribosomal protein S8 yes no 2 0.0019932 75.378 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 3 1.4874 1.2996 21.618 9 Median 1.2802 1.2387 28.379 2 0 Median 1.1473 0.9636 NaN 1 1 Median 1.1007 1.0344 NaN 1 0 Median 1.4874 1.1105 NaN 1 0 Median 1.273 1.2996 NaN 1 0 Median 1.7771 1.4953 11.961 3 0 Median 46916000 20883000 26033000 22766000 10440000 12326000 5711000 2484500 3226500 7741500 3560600 4180900 149310 42644 106660 5689400 2371900 3317400 4859400 1983400 2876100 533 2573 549 2444;2445;2446;2447;2448;2449;2450;2451;2452 2491;2492;2493;2494;2495;2496;2497;2498;2499 2491 9 ADGYVLEGKELEFYLR KLLACIASRPGQCGRADGYVLEGKELEFYL DGYVLEGKELEFYLRKIKARKGK_______ R A D L R K 1 1 0 1 0 0 3 2 0 0 3 1 0 1 0 0 0 0 2 1 0 0 16 1 1900.9571 Q5JR95;P62241 Q5JR95 165 180 RPS8 40S ribosomal protein S8 yes no 3 0.0013401 34.612 By MS/MS By matching 1 1 1.0933 1.1101 16.277 2 Median 1.1836 1.2455 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.01 0.98943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3865700 1631000 2234700 2949200 1219200 1730000 0 0 0 916530 411890 504640 0 0 0 0 0 0 0 0 0 534 2573 550 2453;2454 2500 2500 1 ADHDFVVQEDFMK DLRNVCTEAGMFAIRADHDFVVQEDFMKAV IRADHDFVVQEDFMKAVRKVADSKKLESKL R A D M K A 1 0 0 3 0 1 1 0 1 0 0 1 1 2 0 0 0 0 0 2 0 0 13 0 1579.6977 A0A087X2I1;P62333 A0A087X2I1 371 383 PSMC6 26S protease regulatory subunit 10B yes no 3 0.0013258 39.006 By matching By matching By MS/MS By matching 1 1 1 1 1.0496 1.0673 9.1413 4 Linear 1.0482 0.98389 NaN 1 0 Median 1.093 0.94843 NaN 1 0 Median 1.0467 1.121 NaN 1 0 Median 1.0509 0.90642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7763100 3690300 4072800 3011800 1477700 1534100 770040 395080 374960 3852200 1755000 2097200 129100 62486 66612 0 0 0 0 0 0 535 138 551 2455;2456;2457;2458 2501;2502 2501 2 ADHGEPIGR QYAWESSAGGSFTVRADHGEPIGRGTKVIL GSFTVRADHGEPIGRGTKVILHLKEDQTEY R A D G R G 1 1 0 1 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 0 0 9 0 950.45699 P08238 P08238 169 177 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.00093491 89.752 By matching By MS/MS 1 2 1.0065 0.87257 13.278 3 Plateau 0.94141 0.93932 NaN 1 0 Median 0.90635 0.79584 13.018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3793100 1939700 1853400 682760 353660 329110 3110300 1586000 1524300 0 0 0 0 0 0 0 0 0 0 0 0 536 1899 552 2459;2460;2461 2503;2504;2505;2506 2504 4 ADHQPLTEASYVNLPTIALCNTDSPLR AAFREPRLLVVTDPRADHQPLTEASYVNLP NLPTIALCNTDSPLRYVDIAIPCNNKGAHS R A D L R Y 3 1 2 2 1 1 1 0 1 1 4 0 0 0 3 2 3 0 1 1 0 0 27 0 2995.4709 C9J9K3;A0A0C4DG17;P08865 C9J9K3 129 155 RPSA 40S ribosomal protein SA yes no 3 0.0011664 32.985 By MS/MS 1 0.83282 0.71672 NaN 1 Median NaN NaN NaN 0 0 Median 0.83282 0.71672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2439300 1053400 1385900 0 0 0 2439300 1053400 1385900 0 0 0 0 0 0 0 0 0 0 0 0 537 232 553 2462 2507 2507 1 ADHSFSDGVPSDSVEAAK ______________________________ SFSDGVPSDSVEAAKNASNTEKLTDQVMQN M A D A K N 3 0 0 3 0 0 1 1 1 0 0 1 0 1 1 4 0 0 0 2 0 0 18 0 1817.8068 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;E9PKT8;E9PKI2;E9PP22;C9J1B1 Q99733 2 19 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 1.0934E-12 144.57 By MS/MS By MS/MS By MS/MS 1 2 2 0.8877 0.83757 19.671 5 Median 0.8877 0.8213 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86535 0.83654 0.17358 2 0 Median 1.2475 1.0938 25.358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60256000 29870000 30386000 15057000 7612900 7443900 0 0 0 31803000 16361000 15442000 13396000 5896000 7499800 0 0 0 0 0 0 538 3766 554 2463;2464;2465;2466;2467 2508;2509;2510;2511;2512;2513;2514;2515;2516;2517 2510 10 ADIDLTKR IKGVGRRYAHVVLRKADIDLTKRAGELTED AHVVLRKADIDLTKRAGELTEDEVERVITI K A D K R A 1 1 0 2 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 1 930.51345 P62269 P62269 48 55 RPS18 40S ribosomal protein S18 yes yes 2 0.027774 47.082 By MS/MS By matching By matching 2 1 1 1.3138 1.2711 20.359 4 Median 1.0744 1.0698 1.6675 2 0 Median 1.7173 1.5479 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5817 1.4927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15308000 6577200 8730400 9609100 4464400 5144600 3617100 1244400 2372800 0 0 0 2081400 868360 1213000 0 0 0 0 0 0 539 2578 555 2468;2469;2470;2471 2518 2518 1 ADIEISGPK GFKGEGPDVDVTLPKADIEISGPKVDIDAP DVTLPKADIEISGPKVDIDAPDVSIEGPDA K A D P K V 1 0 0 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 0 0 0 0 9 0 928.48656 Q09666 Q09666 4343 4351 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0048762 59.35 By MS/MS By MS/MS By MS/MS 1 1 2 0.99861 0.942 32.032 4 Median 0.54046 0.53568 NaN 1 1 Median 1.2545 1.1048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99861 0.942 6.9269 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19390000 9445500 9944000 2713400 1780800 932570 8964500 3975300 4989200 0 0 0 7711600 3689300 4022200 0 0 0 0 0 0 540 2749 556 2472;2473;2474;2475 2519;2520;2521;2522;2523;2524;2525;2526 2525 8 ADIEMPFDPSK NILFEEVHIPGSPFKADIEMPFDPSKVVAS SPFKADIEMPFDPSKVVASGPGLEHGKVGE K A D S K V 1 0 0 2 0 0 1 0 0 1 0 1 1 1 2 1 0 0 0 0 0 0 11 0 1248.5696 O75369;E7EN95 O75369 1125 1135 FLNB Filamin-B yes no 2 0.00021139 98.044 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.86535 0.81266 16.444 7 Median 0.85345 0.83905 4.5188 2 0 Median 0.87749 0.76669 7.4216 2 0 Median 0.57856 0.64486 NaN 1 0 Median 1.1417 1.0304 NaN 1 0 Median 0.94818 0.99093 NaN 1 0 Median NaN NaN NaN 0 0 Median 30173000 16963000 13210000 17707000 10067000 7639700 8012000 4426900 3585100 3293700 1968100 1325500 146820 66106 80711 1013200 434480 578700 0 0 0 541 1664 557 2476;2477;2478;2479;2480;2481;2482 2527;2528;2529;2530;2531;2532 2527 6 ADIFMFDEPSSYLDVK GELQRFACAVVCIQKADIFMFDEPSSYLDV DIFMFDEPSSYLDVKQRLKAAITIRSLINP K A D V K Q 1 0 0 3 0 0 1 0 0 1 1 1 1 2 1 2 0 0 1 1 0 0 16 0 1875.8601 P61221;D6R9I9 P61221 235 250 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.0054076 32.946 By MS/MS 1 0.92544 0.81283 NaN 1 Median NaN NaN NaN 0 0 Median 0.92544 0.81283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 820340 461530 358820 0 0 0 820340 461530 358820 0 0 0 0 0 0 0 0 0 0 0 0 542 2550 558 2483 2533 2533 1 ADIGPNLDQLKDDEILR DPLESFNYVLSKSTKADIGPNLDQLKDDEI IGPNLDQLKDDEILRHCNPWPIISITNESQ K A D L R H 1 1 1 4 0 1 1 1 0 2 3 1 0 0 1 0 0 0 0 0 0 0 17 1 1923.9902 B5MDQ0;Q2NKX8 B5MDQ0 752 768 ERCC6L DNA excision repair protein ERCC-6-like yes no 3 6.6674E-06 62.646 By MS/MS By matching 1 1 1.244 1.2988 43.823 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.561 1.7706 NaN 1 0 Median 0.99137 0.95272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3987000 1439100 2547900 0 0 0 0 0 0 3529400 1262700 2266700 457650 176420 281230 0 0 0 0 0 0 543 624 559 2484;2485 2534 2534 1 ADIGVAMGIAGSDVSK AVTGDGVNDSPALKKADIGVAMGIAGSDVS DIGVAMGIAGSDVSKQAADMILLDDNFASI K A D S K Q 3 0 0 2 0 0 0 3 0 2 0 1 1 0 0 2 0 0 0 2 0 0 16 0 1489.7446 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637 P05023 728 743 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 2 1.7691E-06 88.552 By MS/MS By MS/MS 4 2 1.158 1.0407 10.53 6 Median 1.1241 1.1096 12.598 4 1 Median 1.158 1.0273 4.8127 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77611000 35173000 42438000 56143000 25105000 31039000 21467000 10068000 11399000 0 0 0 0 0 0 0 0 0 0 0 0 544 1857 560 2486;2487;2488;2489;2490;2491 2535;2536;2537;2538;2539;2540;2541 2536 7 ADILEDKDGK KKLKEVFSMAGVVVRADILEDKDGKSRGIG GVVVRADILEDKDGKSRGIGTVTFEQSIEA R A D G K S 1 0 0 3 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1102.5506 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0QZM1 A0A087X0X3 233 242 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0016704 107.57 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 7 7 4 1.1229 1.0654 18.543 29 Median 1.297 1.3387 7.5826 4 0 Linear 1.1058 1.0435 20.261 4 1 Linear 0.8436 0.94633 20.507 3 0 Median 1.1538 1.11 13.895 7 0 Median 0.85905 0.91754 10.908 7 0 Median 1.3785 1.1905 10.039 4 0 Median 261130000 138990000 122140000 9218300 3799900 5418500 10020000 4620400 5400100 77967000 40508000 37460000 6259700 2885100 3374600 151180000 84265000 66915000 6489700 2912200 3577500 545 116;1423 561 2492;2493;2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514;2515;2516;2517;2518;2519;2520;2521 2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567 2548 26 ADILEDKDGKSR KKLKEVFSMAGVVVRADILEDKDGKSRGIG VVRADILEDKDGKSRGIGTVTFEQSIEAVQ R A D S R G 1 1 0 3 0 0 1 1 0 1 1 2 0 0 0 1 0 0 0 0 0 0 12 2 1345.6838 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0QZM1 A0A087X0X3 233 244 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2;3 0.00020569 65.179 By matching By matching By matching By MS/MS By matching 1 1 1 5 1 0.92724 1.0607 23.507 9 Median 0.98108 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1709 1.4398 NaN 1 0 Median 1.108 1.1376 NaN 1 0 Median 0.79083 0.90465 14.718 5 0 Median 0.62299 0.63916 NaN 1 0 Median 11789000 6151500 5637600 866800 438060 428740 0 0 0 298830 132360 166470 146200 75112 71088 10355000 5451800 4903100 122420 54153 68267 546 116;1423 562 2522;2523;2524;2525;2526;2527;2528;2529;2530 2568;2569;2570;2571;2572;2573;2574 2574 7 ADILQVGLR YLNLEIKGTNGQVTRADILQVGLRELLNAL NGQVTRADILQVGLRELLNALFSNPMDDNL R A D L R E 1 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 983.57638 D6RJF2;Q9H074;D6REB4 Q9H074 293 301 PAIP1 Polyadenylate-binding protein-interacting protein 1 no no 2 0.00067915 105.12 By MS/MS By matching By MS/MS By matching By matching 2 2 2 3 1 0.99851 0.9089 19.492 10 Median 1.0014 0.98658 15.876 2 0 Median 1.0365 0.9089 1.6319 2 0 Median 0.77448 0.81973 24.168 2 1 Median 1.2039 0.99325 21.31 3 0 Median NaN NaN NaN 0 0 Median 0.77868 0.67557 NaN 1 0 Median 21002000 11113000 9889600 8330300 4064700 4265600 1559300 731050 828240 9234800 5393400 3841400 1375500 615240 760300 0 0 0 502590 308520 194070 547 3919;831 563 2531;2532;2533;2534;2535;2536;2537;2538;2539;2540 2575;2576;2577;2578;2579 2578 5 ADIVQQLLQQGASPNAATTSGYTPLHLSAR KDDQTPLHISARLGKADIVQQLLQQGASPN AATTSGYTPLHLSAREGHEDVAAFLLDHGA K A D A R E 5 1 1 1 0 4 0 2 1 1 4 0 0 0 2 3 3 0 1 1 0 0 30 0 3107.6 Q12955 Q12955 512 541 ANK3 Ankyrin-3 yes yes 3 1.2496E-14 59.275 By MS/MS By matching By MS/MS 1 1 1 0.64844 0.63854 6.0145 3 Median 0.64844 0.63854 NaN 1 0 Median 0.81049 0.70334 NaN 1 0 Median 0.57226 0.62987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9189100 5349700 3839500 3011100 1778400 1232600 651670 335340 316340 5526400 3235900 2290500 0 0 0 0 0 0 0 0 0 548 2773 564 2541;2542;2543 2580;2581;2582 2582 3 ADKDYHFKVDNDENEHQLSLR SPLRPQNYLFGCELKADKDYHFKVDNDENE FKVDNDENEHQLSLRTVSLGAGAKDELHIV K A D L R T 1 1 2 4 0 1 2 0 2 0 2 2 0 1 0 1 0 0 1 1 0 0 21 2 2572.1942 P06748 P06748 25 45 NPM1 Nucleophosmin yes yes 3;4;5 7.0992E-26 127.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 4 6 8 8 4 1.1331 1.1826 15.458 34 Median 1.1725 1.2146 6.4722 5 0 Median 1.1462 1.0898 12.555 4 0 Median 1.1117 1.2568 11.482 6 1 Median 1.2663 1.2205 10.468 8 0 Median 1.0309 1.1877 14.211 7 0 Median 1.0009 0.90612 16.231 4 0 Median 543040000 248990000 294040000 49643000 21323000 28320000 14415000 6912900 7502400 312690000 148890000 163800000 100060000 42700000 57360000 58275000 25651000 32625000 7955000 3516300 4438700 549 1877 565 2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578 2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602;2603;2604;2605;2606;2607;2608 2589 26 ADKEAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF M A D E R V 4 1 0 3 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 14 1 1564.7005 Q09028;E9PNS6;E9PNS2;E9PIC4 Q09028 2 15 RBBP4 Histone-binding protein RBBP4 yes no 2;3 8.7983E-09 152.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 8 4 7 4 1.0599 1.0125 24.906 24 Median 1.175 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0351 1.0538 32.967 8 2 Median 1.0873 1.026 8.9882 4 0 Median 0.96978 0.97868 29.035 7 1 Median 1.0905 0.92922 12.818 4 0 Median 944160000 437870000 506300000 26423000 11945000 14477000 0 0 0 610830000 282350000 328470000 141270000 63995000 77274000 157400000 75791000 81605000 8248800 3783600 4465100 550 2746 566 2579;2580;2581;2582;2583;2584;2585;2586;2587;2588;2589;2590;2591;2592;2593;2594;2595;2596;2597;2598;2599;2600;2601;2602 2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631;2632;2633;2634;2635;2636;2637;2638;2639 2626 31 ADKMDMSLDDIIK ______________________________ ______________________________ M A D I K L 1 0 0 4 0 0 0 0 0 2 1 2 2 0 0 1 0 0 0 0 0 0 13 1 1493.7106 Q86V81 Q86V81 2 14 ALYREF THO complex subunit 4 yes yes 2 2.1706E-05 89.189 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 7 3 8 8 1.1349 1.1236 11.307 29 Median 1.015 0.98473 NaN 1 0 Median 1.4671 1.333 8.4474 2 0 Median 1.062 1.1045 4.0792 7 0 Median 1.3803 1.2408 7.4671 3 0 Median 1.1066 1.1661 13.993 8 0 Median 1.2718 1.0811 9.2338 8 0 Median 268020000 124210000 143810000 1889300 937210 952080 1706100 702710 1003400 195840000 92246000 103590000 21345000 9054400 12291000 26781000 12169000 14612000 20460000 9100900 11359000 551 3286 567;568;569 2603;2604;2605;2606;2607;2608;2609;2610;2611;2612;2613;2614;2615;2616;2617;2618;2619;2620;2621;2622;2623;2624;2625;2626;2627;2628;2629;2630;2631 2640;2641;2642;2643;2644;2645;2646;2647;2648;2649 2649 1699;1700 10 ADKNEVAAEVAK VTKQGNIVRELKAQKADKNEVAAEVAKLLD AQKADKNEVAAEVAKLLDLKKQLAVAEGKP K A D A K L 4 0 1 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 12 1 1243.6408 P56192;H0YIP0 P56192 864 875 MARS Methionine--tRNA ligase, cytoplasmic yes no 2;3 0.0050993 57.348 By matching By MS/MS 2 3 1.0428 1.0086 7.8217 5 Median 1.0631 1.1282 0.39659 2 0 Median 1.0271 0.99309 3.0939 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8188200 3757100 4431200 1537800 742490 795290 6650400 3014600 3635900 0 0 0 0 0 0 0 0 0 0 0 0 552 2508 570 2632;2633;2634;2635;2636 2650;2651;2652;2653 2652 4 ADKPDMGEIASFDK ______________________________ MADKPDMGEIASFDKAKLKKTETQEKNTLP M A D D K A 2 0 0 3 0 0 1 1 0 1 0 2 1 1 1 1 0 0 0 0 0 0 14 1 1522.6974 P63313 P63313 2 15 TMSB10 Thymosin beta-10 yes yes 2 7.5391E-05 79.82 By MS/MS 2 0.90494 0.91769 9.2159 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90494 0.91769 9.2159 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17785000 9649200 8135800 0 0 0 0 0 0 17785000 9649200 8135800 0 0 0 0 0 0 0 0 0 553 2626 571;572 2637;2638 2654;2655;2656 2656 1292 3 ADLAAVEAK KEEYAVLISEAQAIKADLAAVEAKVNRSTA EAQAIKADLAAVEAKVNRSTALLKSLSAER K A D A K V 4 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 886.476 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3463 3471 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0032081 66.692 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1356 1.0287 22.866 5 Median 1.2126 1.1935 42.19 2 0 Median 1.1696 1.0287 NaN 1 1 Median 0.91286 0.98197 NaN 1 0 Median 1.1356 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16974000 8001000 8973400 2410800 1180100 1230700 8430300 3840800 4589500 5234600 2586900 2647700 898730 393220 505500 0 0 0 0 0 0 554 2865 573 2639;2640;2641;2642;2643 2657;2658;2659;2660 2657 4 ADLAEEYSK LIALVNDPQPEHPLRADLAEEYSKDRKKFC PEHPLRADLAEEYSKDRKKFCKNAEEFTKK R A D S K D 2 0 0 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1024.4713 P68036 P68036 123 131 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes yes 2 0.00079617 97.431 By MS/MS By MS/MS By MS/MS 1 1 1 1.1711 1.0054 6.7818 3 Median 1.0467 0.98787 NaN 1 0 Median 1.1711 1.0054 NaN 1 0 Median 1.1944 1.1197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27600000 12375000 15225000 12607000 5412300 7194200 4586700 2189500 2397200 10407000 4772900 5633600 0 0 0 0 0 0 0 0 0 555 2631 574 2644;2645;2646 2661;2662;2663;2664;2665 2665 5 ADLAEEYSKDR LIALVNDPQPEHPLRADLAEEYSKDRKKFC HPLRADLAEEYSKDRKKFCKNAEEFTKKYG R A D D R K 2 1 0 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1295.5994 P68036 P68036 123 133 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes yes 2;3 7.5006E-05 73.848 By MS/MS By MS/MS By matching 2 3 2 0.91975 0.79864 13.786 7 Median 0.93256 0.92145 2.07 2 0 Median 0.81504 0.71904 9.4347 3 0 Median 0.83689 0.86763 11.718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23866000 11968000 11897000 18594000 9208300 9385800 3394400 1798800 1595600 1877000 961070 915970 0 0 0 0 0 0 0 0 0 556 2631 575 2647;2648;2649;2650;2651;2652;2653 2666;2667;2668;2669;2670;2671;2672;2673 2668 8 ADLATAPPHVTVVR VVDLEGSLKVVYPSKADLATAPPHVTVVR_ KADLATAPPHVTVVR_______________ K A D V R - 3 1 0 1 0 0 0 0 1 0 1 0 0 0 2 0 2 0 0 3 0 0 14 0 1445.7991 Q8N1G4 Q8N1G4 570 583 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 1.9873E-06 138.99 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.88822 0.78798 9.7928 8 Median 0.83567 0.78876 6.3443 2 0 Median 0.94883 0.8209 7.0003 2 0 Median 0.699 0.72192 20.137 2 0 Median 0.94113 0.78798 0.36259 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98820000 53038000 45782000 49615000 26845000 22771000 20502000 10322000 10180000 19947000 11653000 8293600 8755100 4218100 4537000 0 0 0 0 0 0 557 3359 576 2654;2655;2656;2657;2658;2659;2660;2661 2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687 2677 14 ADLDKLNIDSIIQR ______________________________ MADLDKLNIDSIIQRLLEVRGSKPGKNVQL M A D Q R L 1 1 1 3 0 1 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 0 14 1 1612.8784 F8VYE8;P36873;F8VR82;A0A087WYY5 F8VYE8 2 15 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 1.4004E-05 137.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 4 1.0759 1.002 23.576 10 Median NaN NaN NaN 0 0 Median 1.2186 1.1045 13.471 2 0 Median 0.79744 0.8353 43.982 2 0 Median 1.2308 1.1615 NaN 1 0 Median 1.0547 1.1423 NaN 1 0 Median 1.0581 0.89102 17.714 4 0 Median 65765000 30055000 35710000 0 0 0 32114000 14198000 17917000 21475000 9977100 11498000 887330 405350 481990 3998200 1980200 2017900 7290900 3494900 3796000 558 1074 577 2662;2663;2664;2665;2666;2667;2668;2669;2670;2671 2688;2689;2690;2691;2692;2693;2694;2695 2694 8 ADLDVSGPK GFKGEGPDVDVNLPKADLDVSGPKVDIDVP DVNLPKADLDVSGPKVDIDVPDVNIEGPEG K A D P K V 1 0 0 2 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 900.45526 Q09666 Q09666 3049 3057 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00044702 126.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 4 1 2 0.99091 0.97027 24.151 16 Median 0.89992 0.90143 28.724 3 0 Plateau 0.98889 0.88025 0.35249 2 0 Median 1.0646 1.1352 26.291 4 1 Median 1.009 0.99458 6.9321 4 0 Median 1.01 1.0575 NaN 1 0 Median 1.095 0.92351 4.4937 2 0 Median 184480000 89666000 94816000 14887000 8046300 6841000 38478000 18952000 19526000 46404000 21882000 24522000 62912000 30714000 32199000 13517000 6097000 7419700 8284300 3975800 4308500 559 2749 578 2672;2673;2674;2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687 2696;2697;2698;2699;2700;2701;2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716;2717;2718;2719;2720;2721;2722;2723;2724;2725;2726;2727;2728;2729;2730 2719 35 ADLEEQLSDEEK ______________________________ ______________________________ M A D E K V 1 0 0 2 0 1 4 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1404.6256 P47755;C9JUG7;F8W9N7;F8WED3 P47755 2 13 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 2 0.035665 44.863 By MS/MS 1 0.74157 0.70983 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74157 0.70983 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4318200 2546400 1771800 0 0 0 0 0 0 4318200 2546400 1771800 0 0 0 0 0 0 0 0 0 560 2354 579 2688 2731 2731 1 ADLEEQLSDEEKVR ______________________________ MADLEEQLSDEEKVRIAAKFIIHAPPGEFN M A D V R I 1 1 0 2 0 1 4 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 14 1 1659.7952 P47755;C9JUG7;F8W9N7 P47755 2 15 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 2 1.6268E-09 101.95 By MS/MS By MS/MS 1 2 0.95564 0.99548 14.254 2 Median 1.1057 1.101 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82595 0.90004 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7249400 3666900 3582500 3995600 2027000 1968600 0 0 0 3253800 1639900 1613900 0 0 0 0 0 0 0 0 0 561 2354 580 2689;2690;2691 2732;2733;2734 2734 3 ADLEMQIENLKEELAYLK INGLRRVLDELTLARADLEMQIENLKEELA EMQIENLKEELAYLKKNHEEEMNALRGQVG R A D L K K 2 0 1 1 0 1 4 0 0 1 4 2 1 0 0 0 0 0 1 0 0 0 18 1 2149.0977 CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 202 219 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 1.9235E-06 73.464 By matching By MS/MS By matching By matching 2 3 1 1 1.3532 1.4147 38.636 7 Median NaN NaN NaN 0 0 Median 0.9131 0.84579 35.197 2 0 Median 1.3608 1.4198 0.4501 3 0 Median 0.68103 0.64686 NaN 1 0 Median 1.5295 1.635 NaN 1 0 Median NaN NaN NaN 0 0 Median 60598000 24780000 35817000 0 0 0 2231700 1201300 1030400 57691000 23288000 34403000 73507 36557 36950 601750 254790 346960 0 0 0 + 562 768 581;582 2692;2693;2694;2695;2696;2697;2698 2735;2736;2737;2738;2739 2738 290 5 ADLEMQIENLKEELAYLKK INGLRRVLDELTLARADLEMQIENLKEELA MQIENLKEELAYLKKNHEEEMNALRGQVGG R A D K K N 2 0 1 1 0 1 4 0 0 1 4 3 1 0 0 0 0 0 1 0 0 0 19 2 2277.1926 CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 202 220 KRT17 Keratin, type I cytoskeletal 17 no no 3 0.01819 18.784 By MS/MS By matching 1 1 0.9988 1.0021 74.046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4422 1.6917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69171 0.59366 NaN 1 0 Median 18920000 7554800 11365000 0 0 0 0 0 0 18470000 7291600 11179000 0 0 0 0 0 0 449190 263130 186060 + 563 768 583 2699;2700 2740 2740 1 ADLEMQIESLKEELAYLK INGLRRVLDELTLARADLEMQIESLKEELA EMQIESLKEELAYLKKNHEEEMNALRGQVG R A D L K K 2 0 0 1 0 1 4 0 0 1 4 2 1 0 0 1 0 0 1 0 0 0 18 1 2122.0868 P02533;CON__P02533 P02533 233 250 KRT14 Keratin, type I cytoskeletal 14 yes no 3 2.3377E-06 63.827 By MS/MS 1 1.1091 1.0443 NaN 1 Median NaN NaN NaN 0 0 Median 1.1091 1.0443 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1644700 968360 676390 0 0 0 1644700 968360 676390 0 0 0 0 0 0 0 0 0 0 0 0 + 564 739 584 2701 2741 2741 1 ADLEMQIESLTEELAYLKK INGLRRVLDELTLTKADLEMQIESLTEELA MQIESLTEELAYLKKNHEEEMKDLRNVSTG K A D K K N 2 0 0 1 0 1 4 0 0 1 4 2 1 0 0 1 1 0 1 0 0 0 19 1 2223.1345 P13645;CON__P13645 P13645 267 285 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 6.8127E-31 139.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 6 2 0.028749 0.029673 83.929 10 Median 0.089568 0.092567 NaN 1 1 Median 0.01835 0.017254 106.59 3 3 Median 0.02846 0.029955 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.030292 0.034383 86.042 4 4 Median 0.029041 0.024914 NaN 1 1 Median 108900000 107120000 1782600 2519600 2441600 77998 19939000 19660000 279060 1352800 1283900 68948 0 0 0 76639000 75364000 1274900 8449000 8367300 81713 + 565 756 585;586 2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715 2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755 2750 280 14 ADLFPILMR FSISEDNAVVKTAHRADLFPILMRILYGRM VKTAHRADLFPILMRILYGRMKNKTGSKTQ R A D M R I 1 1 0 1 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 9 0 1074.5896 O75691 O75691 1006 1014 UTP20 Small subunit processome component 20 homolog yes yes 2 0.025538 37.558 By matching By MS/MS By matching By matching By matching 1 2 1 2 1 0.99988 1.0368 35.096 7 Median NaN NaN NaN 0 0 Median 0.51176 0.43468 NaN 1 0 Median 1.0714 1.1789 11.154 2 0 Median 1.1764 1.0206 NaN 1 0 Median 0.99425 1.0378 0.1367 2 0 Median 1.0657 0.87979 NaN 1 0 Median 9535900 4595100 4940800 0 0 0 1276400 551710 724700 6084500 2910200 3174300 350900 161030 189870 1756700 940970 815750 67342 31210 36132 566 1691 587 2716;2717;2718;2719;2720;2721;2722 2756 2756 1 ADLGVSGPK GFKGEGPEVDMNLPKADLGVSGPKVDIDVP DMNLPKADLGVSGPKVDIDVPDVNLEAPEG K A D P K V 1 0 0 1 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 842.44978 Q09666 Q09666 1537 1545 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.048485 31.422 By MS/MS 1 1.1025 1.0944 NaN 1 Median 1.1025 1.0944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 640650 300250 340400 640650 300250 340400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 567 2749 588 2723 2757 2757 1 ADLIAYLK GTKMIFVGIKKKEERADLIAYLKK______ IKKKEERADLIAYLKK______________ R A D L K K 2 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 905.52222 C9JFR7;P99999 C9JFR7 93 100 CYCS Cytochrome c yes no 2 0.0044851 81.297 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.4719 1.2604 6.1104 4 Median 1.4809 1.3296 NaN 1 0 Median 1.4629 1.201 NaN 1 0 Median 1.4058 1.3228 NaN 1 0 Median 1.4836 1.1862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 255870000 104570000 151300000 95205000 38228000 56977000 37678000 15292000 22386000 103070000 43064000 60006000 19919000 7990400 11928000 0 0 0 0 0 0 568 696 589 2724;2725;2726;2727 2758;2759;2760;2761 2761 4 ADLIAYLKK GTKMIFVGIKKKEERADLIAYLKK______ KKKEERADLIAYLKK_______________ R A D K K - 2 0 0 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 1 0 0 0 9 1 1033.6172 C9JFR7;P99999 C9JFR7 93 101 CYCS Cytochrome c yes no 2 0.0032161 73.208 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.568 1.4128 15.049 4 Median 1.5645 1.4651 NaN 1 0 Median 1.5715 1.3623 NaN 1 0 Median 1.5913 1.5914 NaN 1 0 Median 1.334 1.1189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 188150000 62176000 125980000 60285000 14047000 46238000 62935000 23876000 39059000 61707000 22985000 38723000 3226200 1268500 1957700 0 0 0 0 0 0 569 696 590 2728;2729;2730;2731;2732 2762;2763;2764;2765;2766;2767;2768;2769;2770 2766 9 ADLIDAAGSSLGR SSLVYNISDGQFTSRADLIDAAGSSLGRGA SRADLIDAAGSSLGRGALVPGLGACYDTVN R A D G R G 3 1 0 2 0 0 0 2 0 1 2 0 0 0 0 2 0 0 0 0 0 0 13 0 1244.6361 F8VWT9;J3KPF0 F8VWT9 437 449 HECTD4 yes no 2 0.00049996 72.006 By matching By MS/MS By matching 1 2 1 0.9117 0.84157 31.415 4 Median NaN NaN NaN 0 0 Median 0.98841 0.82164 NaN 1 0 Median 0.63274 0.64459 41.1 2 0 Median NaN NaN NaN 0 0 Median 0.92907 0.9842 NaN 1 0 Median NaN NaN NaN 0 0 Median 16400000 8762900 7637300 0 0 0 3034100 1509200 1524900 10594000 5783500 4810100 0 0 0 2772600 1470300 1302400 0 0 0 570 1070 591 2733;2734;2735;2736 2771;2772 2772 2 ADLINNLGTIAK DRTLTIVDTGIGMTKADLINNLGTIAKSGT MTKADLINNLGTIAKSGTKAFMEALQAGAD K A D A K S 2 0 2 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1241.698 P07900;Q14568;P08238;Q58FF8 P07900 101 112 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 12 8 3 1 3 1 1.1112 1.0005 31.463 27 Median 1.1112 1.0155 18.178 11 3 Median 1.0801 0.91648 7.3098 8 0 Median 1.1004 1.1704 23.531 3 0 Plateau 1.1579 1.0005 NaN 1 0 Median 1.9061 2.0492 32.907 3 0 Median 1.2031 1.031 NaN 1 0 Median 3399000000 1512000000 1887100000 1842200000 804530000 1037700000 1350800000 616220000 734580000 139530000 64732000 74796000 25656000 11669000 13987000 39104000 14013000 25091000 1696400 788710 907660 571 1894;1899;3040 592 2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747;2748;2749;2750;2751;2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764 2773;2774;2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792;2793;2794;2795;2796;2797;2798;2799;2800;2801;2802;2803;2804;2805;2806;2807;2808;2809 2795 37 ADLIPYQDSPEGPDHSSASSGVPNPPK INVKRPVERRFPIYKADLIPYQDSPEGPDH PDHSSASSGVPNPPKARTYTETVNHHYLLF K A D P K A 2 0 1 3 0 1 1 2 1 1 1 1 0 0 6 5 0 0 1 1 0 0 27 0 2761.2831 Q8WUA4;H0Y4Q6;H7C318 Q8WUA4 757 783 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 2.5411E-09 48.759 By MS/MS By MS/MS 1 1 0.40905 0.39003 31.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28786 0.31178 NaN 1 0 Median 0.58126 0.48791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22911000 16818000 6093600 0 0 0 0 0 0 21612000 16007000 5604900 1299500 810810 488680 0 0 0 0 0 0 572 3487 593 2765;2766 2810;2811;2812 2811 3 ADLLLSTQPGREEGSPLELER LQASDLPASASLPAKADLLLSTQPGREEGS TQPGREEGSPLELERLKLEPHEGLLLRFPY K A D E R L 1 2 0 1 0 1 4 2 0 0 5 0 0 0 2 2 1 0 0 0 0 0 21 1 2309.1863 F5GZS6;J3KPF3;P08195;F5GZI0 F5GZS6 562 582 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 4.4313E-39 134.06 By MS/MS By MS/MS 2 1 0.58355 0.52999 59.265 3 Median 0.36924 0.38901 79.919 2 1 Median 0.58355 0.52999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29258000 17190000 12068000 26867000 15749000 11118000 2390500 1441200 949350 0 0 0 0 0 0 0 0 0 0 0 0 573 1016 594 2767;2768;2769 2813;2814 2813 2 ADLQNHLDTAQNALQDK TELLLSAEAAKTAQRADLQNHLDTAQNALQ LQNHLDTAQNALQDKQQELNKITTQLDQVT R A D D K Q 3 0 2 3 0 3 0 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 17 0 1893.9181 Q15075 Q15075 663 679 EEA1 Early endosome antigen 1 yes yes 2;3 1.4293E-13 122.14 By MS/MS By MS/MS 1 2 1.0801 0.95669 6.4604 3 Median 0.889 0.85635 NaN 1 0 Median 1.0871 0.95773 0.15329 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35298000 17837000 17461000 18442000 9815100 8626400 16856000 8021600 8834900 0 0 0 0 0 0 0 0 0 0 0 0 574 2926 595 2770;2771;2772 2815;2816;2817;2818 2816 4 ADLQNHLDTAQNALQDKQQELNK TELLLSAEAAKTAQRADLQNHLDTAQNALQ TAQNALQDKQQELNKITTQLDQVTAKLQDK R A D N K I 3 0 3 3 0 5 1 0 1 0 4 2 0 0 0 0 1 0 0 0 0 0 23 1 2634.2998 Q15075 Q15075 663 685 EEA1 Early endosome antigen 1 yes yes 4 6.7027E-06 56.247 By MS/MS 2 0.90388 0.85783 2.4175 2 Median 0.90388 0.85783 2.4175 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44058000 20835000 23223000 44058000 20835000 23223000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 575 2926 596 2773;2774 2819;2820 2820 2 ADLRDNYSPGWK NDYRRRLLSVNIRVRADLRDNYSPGWKFNH RVRADLRDNYSPGWKFNHWELKGVPIRLEV R A D W K F 1 1 1 2 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 0 0 0 12 1 1420.6735 P07814 P07814 1343 1354 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 0.001689 41.401 By MS/MS 1 0.97674 0.98501 NaN 1 Median 0.97674 0.98501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5909700 3135500 2774200 5909700 3135500 2774200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 576 1892 597 2775 2821;2822 2821 2 ADLSGITK SVLGDVGITEVFSDRADLSGITKEQPLKVS TEVFSDRADLSGITKEQPLKVSKALHKAAL R A D T K E 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 803.43888 CON__P34955 CON__P34955 338 345 yes yes 2 9.7029E-05 110.31 By MS/MS By MS/MS 1 1 0.039695 0.035142 11.439 2 Median 0.040624 0.038103 NaN 1 1 Median 0.038788 0.032412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30496000 29449000 1047200 12741000 12314000 426950 17756000 17135000 620260 0 0 0 0 0 0 0 0 0 0 0 0 + 577 763 598 2776;2777 2823;2824 2824 2 ADLSLADALTEPSPDIEGEIKR ______________________________ ALTEPSPDIEGEIKRDFIATLEAEAFDDVV M A D K R D 3 1 0 3 0 0 3 1 0 2 3 1 0 0 2 2 1 0 0 0 0 0 22 1 2339.1856 E7EVA0;P27816;H7C456;A0A0J9YVV8;A0A0J9YW37 E7EVA0 2 23 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 2.1033E-07 48.656 By matching By matching By MS/MS By matching 1 1 2 1 0.77575 0.74551 77.574 5 Median 0.25462 0.25713 NaN 1 0 Median 0.67266 0.65186 NaN 1 0 Median 1.4592 1.6605 7.5597 2 0 Median 0.77575 0.74551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8313200 3520200 4793000 548570 444540 104030 475390 330780 144610 7213000 2702900 4510100 76229 42010 34218 0 0 0 0 0 0 578 895 599 2778;2779;2780;2781;2782 2825;2826 2825 2 ADLTEYLSTHYK QAVEGPSENVRKLSRADLTEYLSTHYKAPR LSRADLTEYLSTHYKAPRMVLAAAGGVEHQ R A D Y K A 1 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 2 0 2 0 0 0 12 0 1439.6933 P31930 P31930 214 225 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2;3 0.00048458 77.379 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.2369 1.1417 13.016 7 Median 1.1875 1.097 5.6448 2 0 Median 1.4845 1.2805 0.048303 2 0 Median 0.98726 0.96953 11.87 2 1 Median 1.3576 1.2107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55544000 24424000 31120000 38966000 17239000 21728000 3634000 1340300 2293700 11638000 5295900 6342500 1304900 548930 755970 0 0 0 0 0 0 579 2205 600 2783;2784;2785;2786;2787;2788;2789 2827;2828;2829;2830;2831;2832;2833 2829 7 ADLTGISPSPNLYLSK ILQDMGITDIFDETRADLTGISPSPNLYLS DLTGISPSPNLYLSKIIHKTFVEVDENGTQ R A D S K I 1 0 1 1 0 0 0 1 0 1 3 1 0 0 2 3 1 0 1 0 0 0 16 0 1674.8829 Q96P63 Q96P63 328 343 SERPINB12 Serpin B12 yes yes 2 0.0014717 55.452 By MS/MS By MS/MS 1 2 3.1796 3.3948 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1796 3.3948 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20272000 6272100 14000000 0 0 0 0 0 0 17758000 3758800 14000000 0 0 0 2513300 2513300 0 0 0 0 580 3710 601 2790;2791;2792 2834;2835;2836 2835 3 ADLYLEGK SGTSWSYVLPGPDQRADLYLEGKDQLGGWF LPGPDQRADLYLEGKDQLGGWFQSSLLTSV R A D G K D 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 907.4651 Q9NSE4 Q9NSE4 618 625 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.012155 55.531 By MS/MS 1 1.3963 1.184 NaN 1 Median NaN NaN NaN 0 0 Median 1.3963 1.184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7866200 2994000 4872200 0 0 0 7866200 2994000 4872200 0 0 0 0 0 0 0 0 0 0 0 0 581 4103 602 2793 2837 2837 1 ADMEDLMSSK LEAKEEFERQNKQLRADMEDLMSSKDDVGK NKQLRADMEDLMSSKDDVGKNVHELEKSKR R A D S K D 1 0 0 2 0 0 1 0 0 0 1 1 2 0 0 2 0 0 0 0 0 0 10 0 1125.4682 P35580 P35580 1511 1520 MYH10 Myosin-10 yes yes 2 0.0097072 44.863 By matching By MS/MS By matching 1 1 1 1.2913 1.1453 46.759 3 Median 1.4273 1.34 NaN 1 0 Median 1.2913 1.1453 NaN 1 0 Median 0.50193 0.55755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7924800 3816300 4108400 1561100 650540 910560 4631100 1937500 2693600 1732600 1228300 504270 0 0 0 0 0 0 0 0 0 582 2245 603 2794;2795;2796 2838;2839 2838 2 ADMEDLMSSKDDVGK LEAKEEFERQNKQLRADMEDLMSSKDDVGK ADMEDLMSSKDDVGKNVHELEKSKRALEQQ R A D G K N 1 0 0 4 0 0 1 1 0 0 1 2 2 0 0 2 0 0 0 1 0 0 15 1 1639.7069 P35580 P35580 1511 1525 MYH10 Myosin-10 yes yes 2;3 1.4457E-08 99.5 By MS/MS By MS/MS By matching 2 2 1 1.1684 1.1348 45.071 5 Median 1.3365 1.3076 31.12 2 0 Median 1.2503 1.2124 9.36 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46759 0.49369 NaN 1 0 Median NaN NaN NaN 0 0 Median 19451000 8939400 10512000 13137000 5904300 7232400 4380700 1674200 2706500 0 0 0 0 0 0 1933800 1360900 572930 0 0 0 583 2245 604 2797;2798;2799;2800;2801 2840;2841;2842 2841 3 ADMEDLMSSKDDVGKNVHELEK LEAKEEFERQNKQLRADMEDLMSSKDDVGK SSKDDVGKNVHELEKSKRALEQQVEEMRTQ R A D E K S 1 0 1 4 0 0 3 1 1 0 2 3 2 0 0 2 0 0 0 2 0 0 22 2 2489.1414 P35580 P35580 1511 1532 MYH10 Myosin-10 yes yes 4 2.3974E-09 54.672 By MS/MS By matching 1 1 0.7795 0.87793 22.776 2 Median 0.94198 1.0313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64505 0.74734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36640000 17903000 18737000 28917000 13541000 15375000 0 0 0 7723900 4361700 3362200 0 0 0 0 0 0 0 0 0 584 2245 605 2802;2803 2843;2844 2844 2 ADMETLQR ALKIHKNSSTYWEGKADMETLQRIYGISFP STYWEGKADMETLQRIYGISFPDPKMLKEW K A D Q R I 1 1 0 1 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 8 0 962.44913 P26639 P26639 289 296 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0034039 98.299 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1628 1.0035 45.281 4 Median 1.2161 1.1747 NaN 1 0 Median 1.1347 0.98082 NaN 1 0 Median 0.42251 0.43318 NaN 1 1 Median 1.1916 1.0268 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24528000 12335000 12192000 3844500 1055500 2789000 11491000 5270800 6219900 7216900 5120400 2096500 1975600 888580 1087100 0 0 0 0 0 0 585 2147 606 2804;2805;2806;2807 2845;2846;2847;2848;2849 2848 5 ADMQNLVER ______________________________ ______________________________ M A D E R L 1 1 1 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1074.5128 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0S3;Q5T0R8 Q01518 2 10 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2 0.00057408 114.28 By MS/MS By matching By MS/MS 1 1 1 1.2079 1.1369 15.412 3 Median 1.2079 1.1369 NaN 1 0 Median 1.112 0.94863 NaN 1 0 Median 1.2403 1.289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35847000 15358000 20489000 28448000 12171000 16277000 3491500 1552300 1939200 3907300 1634700 2272600 0 0 0 0 0 0 0 0 0 586 2686 607 2808;2809;2810 2850;2851;2852;2853 2850 4 ADNDAGNAAIDSLLNYETVK AVTRWRTRFRIEMNKADNDAGNAAIDSLLN GNAAIDSLLNYETVKYFNNERYEAQRYDGF K A D V K Y 4 0 3 3 0 0 1 1 0 1 2 1 0 0 0 1 1 0 1 1 0 0 20 0 2092.9913 O75027;B4DGL8;A0A2R8Y473;A0A087WW65;A0A2R8YF35 O75027 325 344 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2;3 2.8674E-08 69.714 By MS/MS By matching 3 2 0.87087 0.86006 34.403 5 Median 1.0353 1.028 18.679 3 0 Plateau 0.77886 0.69022 59.032 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8648900 4330800 4318100 7469500 3731400 3738000 1179400 599330 580060 0 0 0 0 0 0 0 0 0 0 0 0 587 1642 608 2811;2812;2813;2814;2815 2854;2855;2856 2854 3 ADNEKLDNQR ______________________________ ______________________________ M A D Q R L 1 1 2 2 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1201.5687 O00629 O00629 2 11 KPNA4 Importin subunit alpha-3 yes yes 2 0.0034673 47.823 By MS/MS 1 0.69565 0.70746 NaN 1 Median 0.69565 0.70746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 934290 507020 427270 934290 507020 427270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 588 1475 609 2816 2857 2857 1 ADNFEYSDPVDGSISR GKQFSANDKVYTVEKADNFEYSDPVDGSIS DNFEYSDPVDGSISRNQGLRLIFTDGSRIV K A D S R N 1 1 1 3 0 0 1 1 0 1 0 0 0 1 1 3 0 0 1 1 0 0 16 0 1770.7697 P36871;A0A3B3ITK7 P36871 471 486 PGM1 Phosphoglucomutase-1 yes no 2 1.7787E-08 150.21 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.99593 0.93665 9.1773 4 Median 0.90625 0.85443 NaN 1 0 Median 1.0945 0.94958 NaN 1 0 Median 0.89795 0.9239 NaN 1 0 Median 1.2352 1.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37257000 18728000 18530000 28824000 14948000 13876000 2971100 1283500 1687500 5265900 2413700 2852300 196330 82431 113900 0 0 0 0 0 0 589 2262 610 2817;2818;2819;2820 2858;2859;2860;2861;2862 2859 5 ADPAFGLESSGIAGTTSDEPER AHVRKVEEAAKVTGKADPAFGLESSGIAGT ESSGIAGTTSDEPERIEESGNDEARVEGQA K A D E R I 3 1 0 2 0 0 3 3 0 1 1 0 0 1 2 3 2 0 0 0 0 0 22 0 2206.0026 Q8TAQ2;F8VXC8 Q8TAQ2 729 750 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 5.8827E-12 72.417 By MS/MS By matching 1 2 0.86275 0.75532 12.382 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61187 0.67213 NaN 1 0 Median 0.9221 0.80637 9.2496 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3889500 2287400 1602200 0 0 0 0 0 0 3287800 2000000 1287800 601670 287360 314310 0 0 0 0 0 0 590 3455 611 2821;2822;2823 2863;2864 2864 2 ADPAFGLESSGIAGTTSDEPERIEESGNDEAR AHVRKVEEAAKVTGKADPAFGLESSGIAGT DEPERIEESGNDEARVEGQATDEKKEPKEP K A D A R V 4 2 1 3 0 0 6 4 0 2 1 0 0 1 2 4 2 0 0 0 0 0 32 1 3306.476 Q8TAQ2;F8VXC8 Q8TAQ2 729 760 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 1.9105E-77 140.46 By MS/MS By MS/MS 2 1 0.76826 0.69571 28.687 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63488 0.75262 40.058 2 1 Median 0.76826 0.69571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30363000 23040000 7322800 0 0 0 0 0 0 29106000 22322000 6784300 1256400 717970 538470 0 0 0 0 0 0 591 3455 612 2824;2825;2826 2865;2866;2867;2868 2865 4 ADPEAAWEPTEAEAR LFGEEDADQEVSPDRADPEAAWEPTEAEAR ADPEAAWEPTEAEARARASNEDGDIKRIST R A D A R A 5 1 0 1 0 0 4 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 15 0 1641.7271 Q9UBT2;K7EPL2 Q9UBT2 211 225 UBA2 SUMO-activating enzyme subunit 2 yes no 2 9.4746E-10 112.13 By MS/MS By MS/MS 1 1 0.6611 0.59854 4.8921 2 Median 0.61105 0.57819 NaN 1 0 Median 0.71524 0.61961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14522000 8721900 5800600 10205000 6343700 3861000 4317700 2378200 1939500 0 0 0 0 0 0 0 0 0 0 0 0 592 4247 613 2827;2828 2869;2870;2871;2872 2869 4 ADPSILQNLR KLDKEQAALEKIESKADPSILQNLRALVAM KIESKADPSILQNLRALVAMNENLKSQEQE K A D L R A 1 1 1 1 0 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1125.6142 Q567U6;F8W9X7 Q567U6 378 387 CCDC93 Coiled-coil domain-containing protein 93 yes no 2 0.0057065 50.04 By MS/MS 1 0.79298 0.76604 NaN 1 Median 0.79298 0.76604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3835900 2024000 1811900 3835900 2024000 1811900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 593 1089 614 2829 2873 2873 1 ADPTVESEEAFK STSEAPQPPRKKRARADPTVESEEAFKNRM RARADPTVESEEAFKNRMEVKVKIPEELKP R A D F K N 2 0 0 1 0 0 3 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 12 0 1321.6038 Q15014;A0A0A0MT59;Q5JXX1;Q5JXX2 Q15014 105 116 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.00063696 63.283 By MS/MS By MS/MS 1 1 0.89578 0.80575 2.6908 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85507 0.82123 NaN 1 0 Median 0.93844 0.79056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9843400 4966800 4876700 0 0 0 0 0 0 6622900 3269900 3353000 3220500 1696800 1523700 0 0 0 0 0 0 594 2912 615 2830;2831 2874;2875;2876 2875 2 ADQDRLDLEER ATLAQELEKFNRDQKADQDRLDLEERKKVE RDQKADQDRLDLEERKKVETEAKIKQKLRE K A D E R K 1 2 0 3 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1358.6426 Q14683;G8JLG1 Q14683 402 412 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 5.4987E-05 108.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 4 2 0.95021 1.0382 9.2158 12 Median 0.98636 1.0548 5.4486 2 0 Median 1.0478 1.0102 NaN 1 1 Median 0.91139 1.1084 6.0662 2 0 Median 1.3501 1.2226 NaN 1 1 Median 0.89791 0.97346 6.6644 4 1 Median 1.2522 1.1154 1.2327 2 0 Median 84900000 41282000 43618000 5571800 2629100 2942700 4791800 2405800 2386000 24635000 12546000 12089000 4900800 2018100 2882700 41266000 20078000 21188000 3734400 1605400 2129000 595 2889 616 2832;2833;2834;2835;2836;2837;2838;2839;2840;2841;2842;2843 2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893 2884 17 ADQFEYVMYGK LDDGEYNPTDDRPSRADQFEYVMYGKVYRI RPSRADQFEYVMYGKVYRIEGDETSTEAAT R A D G K V 1 0 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 2 1 0 0 11 0 1349.5962 C9JLU1;P52434 C9JLU1 85 95 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2 0.00025044 89.247 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 4 1 1.1899 1.0419 10.371 11 Median 1.2222 1.1502 10.086 2 0 Median 1.2018 1.0271 2.0194 2 0 Median 1.0094 0.95966 6.1239 2 0 Median 1.2898 1.0581 7.0804 4 0 Median NaN NaN NaN 0 0 Median 1.0582 0.83873 NaN 1 0 Median 107380000 49539000 57840000 32919000 14286000 18633000 5167100 2278800 2888300 63812000 30528000 33285000 4883200 2136400 2746800 0 0 0 597870 310820 287050 596 707 617;618 2844;2845;2846;2847;2848;2849;2850;2851;2852;2853;2854 2894;2895;2896;2897;2898;2899;2900;2901;2902 2901 250 9 ADQIETQQLMR ALKNHEDKIRVVLNKADQIETQQLMRVYGA VLNKADQIETQQLMRVYGALMWSLGKIINT K A D M R V 1 1 0 1 0 3 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1331.6503 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8 A0A024R571 235 245 EHD1 EH domain-containing protein 1 no no 2 5.7606E-08 147.51 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1962 1.1095 16.403 4 Median 1.2357 1.169 NaN 1 1 Median 1.2169 1.0531 NaN 1 0 Median 1.1759 1.1998 NaN 1 0 Median 0.9683 0.83689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32433000 13465000 18968000 18406000 7195400 11210000 6323700 2760300 3563400 6690700 3027000 3663800 1012600 482260 530380 0 0 0 0 0 0 597 5 619 2855;2856;2857;2858 2903;2904;2905;2906;2907 2903 5 ADQLDYENFR FLTILRATGFDGGNKADQLDYENFRHVVHK DGGNKADQLDYENFRHVVHKWHYKLTKASV K A D F R H 1 1 1 2 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 10 0 1269.5626 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1085 1094 THOC2 THO complex subunit 2 yes no 2 3.44E-07 162.97 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.2854 1.1063 21.823 6 Median NaN NaN NaN 0 0 Median 1.245 1.1191 NaN 1 0 Median 1.1486 1.2578 32.11 2 0 Median 1.2035 1.0418 31.259 2 0 Median NaN NaN NaN 0 0 Median 1.327 1.0936 NaN 1 0 Median 26212000 12202000 14010000 0 0 0 509090 234020 275070 20751000 9667000 11084000 4641400 2207000 2434300 0 0 0 310720 94270 216450 598 3448 620 2859;2860;2861;2862;2863;2864 2908;2909;2910;2911;2912 2908 5 ADQLTEEQIAEFK ______________________________ ______________________________ M A D F K E 2 0 0 1 0 2 3 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1520.7359 P0DP25;P0DP24;P0DP23;F8WBR5;M0QZ52;G3V479 P0DP25 2 14 CALM2;CALM3;CALM1 yes no 2 1.969E-06 160.36 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.0077 0.92486 10.031 5 Median 0.98431 0.92486 NaN 1 0 Median 1.147 0.98492 NaN 1 0 Median 0.9544 0.90585 NaN 1 0 Median 1.0685 0.85497 NaN 1 0 Median 1.0077 1.1124 NaN 1 0 Median NaN NaN NaN 0 0 Median 100570000 47797000 52768000 42392000 19642000 22750000 4187800 1828700 2359100 34111000 16651000 17459000 86376 33734 52642 19788000 9641900 10146000 0 0 0 599 1931 621 2865;2866;2867;2868;2869 2913;2914;2915;2916;2917;2918;2919 2913 7 ADQPKPISPLK ______________________________ ______________________________ M A D L K N 1 0 0 1 0 1 0 0 0 1 1 2 0 0 3 1 0 0 0 0 0 0 11 1 1192.6816 O43772;C9JPE1;F8WEF6 O43772 2 12 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes no 2 0.00016678 71.349 By MS/MS 1 0.49904 0.4865 NaN 1 Median 0.49904 0.4865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6441200 4137900 2303300 6441200 4137900 2303300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 600 715 622 2870 2920 2920 1 ADQVDTQQLMR AFRGQDDKIRVVLNKADQVDTQQLMRVYGA VLNKADQVDTQQLMRVYGALMWSLGKVINT K A D M R V 1 1 0 2 0 3 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1303.619 Q9H223 Q9H223 224 234 EHD4 EH domain-containing protein 4 yes yes 2 0.00021132 98.033 By MS/MS By MS/MS 1 1 1.4577 1.3798 0.58422 2 Median NaN NaN NaN 0 0 Median 1.5991 1.3855 NaN 1 1 Median 1.3288 1.3741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9036700 3793900 5242800 0 0 0 4495400 1559600 2935900 4541300 2234300 2306900 0 0 0 0 0 0 0 0 0 601 3939 623 2871;2872 2921;2922;2923 2921 3 ADRDESSPYAAMLAAQDVAQR GKETICRVTGGMKVKADRDESSPYAAMLAA SPYAAMLAAQDVAQRCKELGITALHIKLRA K A D Q R C 6 2 0 3 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 21 1 2264.0492 P62263;A0A2R8Y811;E5RH77 P62263 64 84 RPS14 40S ribosomal protein S14 yes no 3 3.159E-14 91.725 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.92596 0.94005 6.3432 8 Median 0.86851 0.91035 1.8895 2 0 Median 0.99469 0.90996 2.9823 2 0 Median 0.92596 1.0056 0.86907 2 0 Median NaN NaN NaN 0 0 Median 0.89625 1.0072 8.1424 2 0 Median NaN NaN NaN 0 0 Median 100600000 52582000 48018000 35804000 19662000 16142000 5291100 2488400 2802700 53298000 27380000 25918000 0 0 0 6206700 3051600 3155100 0 0 0 602 386 624;625 2873;2874;2875;2876;2877;2878;2879;2880 2924;2925;2926;2927;2928;2929;2930;2931;2932;2933;2934;2935;2936;2937;2938;2939;2940;2941;2942 2934 180 19 ADRETVAVKPTENNEEEFTSK LKELEELSLEAQGIKADRETVAVKPTENNE AVKPTENNEEEFTSKDKKKKGQKGKKQSFD K A D S K D 2 1 2 1 0 0 5 0 0 0 0 2 0 1 1 1 3 0 0 2 0 0 21 2 2393.1347 A0A087WUT6;O60841 A0A087WUT6 74 94 EIF5B Eukaryotic translation initiation factor 5B yes no 3;4 6.7786E-09 54.223 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 0.92135 1.046 18.841 7 Median 0.9419 0.99566 16.669 2 0 Median 1.1019 1.0917 NaN 1 0 Median 1.121 1.2774 28.253 2 0 Median 0.85996 0.96255 9.7507 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42708000 21474000 21235000 14542000 7046300 7496000 2030100 1281100 749080 14520000 7386000 7134000 11616000 5760200 5855500 0 0 0 0 0 0 603 35 626 2881;2882;2883;2884;2885;2886;2887 2943;2944;2945;2946;2947;2948;2949;2950;2951 2949 9 ADRPSLEKPEPIHLSVSTPVTQGGTVK TAQTYNASPVISSVKADRPSLEKPEPIHLS HLSVSTPVTQGGTVKVLTQGINTPPVLVHN K A D V K V 1 1 0 1 0 1 2 2 1 1 2 2 0 0 4 3 3 0 0 3 0 0 27 2 2842.5189 Q96T58 Q96T58 2904 2930 SPEN Msx2-interacting protein yes yes 4 8.2772E-11 61.488 By MS/MS 1 0.43479 0.57697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43479 0.57697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6376400 5013300 1363100 0 0 0 0 0 0 6376400 5013300 1363100 0 0 0 0 0 0 0 0 0 604 3741 627 2888 2952 2952 1 ADSAVSQEQLR RKDEKTAQTRESHAKADSAVSQEQLRKLQE SHAKADSAVSQEQLRKLQERVERCAKEAEK K A D L R K 2 1 0 1 0 2 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1202.5891 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 176 186 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2 0.00020438 74.464 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.149 0.99897 11.465 5 Median 1.0136 0.99897 NaN 1 0 Median 1.149 0.99453 NaN 1 0 Median 0.88744 0.88691 NaN 1 0 Median 1.2939 1.1302 10.471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5196300 2523600 2672700 1080500 493930 586550 1824700 852310 972340 1473300 823690 649580 817920 353650 464270 0 0 0 0 0 0 605 244 628 2889;2890;2891;2892;2893 2953;2954;2955;2956 2955 4 ADSELQLVEQR ______________________________ ______________________________ M A D Q R I 1 1 0 1 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1286.6466 P07741;H3BQZ9;H3BQF1;H3BSW3 P07741 2 12 APRT Adenine phosphoribosyltransferase yes no 2 1.0953E-14 182.64 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.3108 1.1163 16.073 7 Median 1.3418 1.2537 27.269 2 0 Median 1.3476 1.1163 13.905 3 0 Median 1.2236 1.1751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3108 1.0211 NaN 1 0 Median 329650000 149020000 180630000 277500000 126000000 151500000 24290000 9831500 14459000 27225000 12905000 14320000 0 0 0 0 0 0 635150 278070 357080 606 1891 629 2894;2895;2896;2897;2898;2899;2900 2957;2958;2959;2960;2961;2962;2963;2964;2965 2964 9 ADSGLLLK ______________________________ ______________________________ M A D L K R 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 815.47527 Q5SY16 Q5SY16 2 9 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 1 0.054417 40.103 By MS/MS By matching 1 1 1.2465 1.1828 16.817 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2537 1.3322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2393 1.0502 NaN 1 0 Median 2872300 1186600 1685700 0 0 0 0 0 0 2651900 1089900 1562000 0 0 0 0 0 0 220380 96707 123680 607 3077 630 2901;2902 2966 2966 0 ADSGPTQPPLSLSPAPETK SRTVPDSEAPPGWDRADSGPTQPPLSLSPA PTQPPLSLSPAPETKRPGQAAKKETKEPKK R A D T K R 2 0 0 1 0 1 1 1 0 0 2 1 0 0 5 3 2 0 0 0 0 0 19 0 1891.9527 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 2071 2089 SEC16A Protein transport protein Sec16A yes no 2 0.00064043 49.31 By MS/MS 1 0.60722 0.58314 NaN 1 Median 0.60722 0.58314 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5079800 2945500 2134200 5079800 2945500 2134200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 608 1513 631 2903 2967 2967 1 ADSGTAGGAALAAPAPGPGSGGPGPR ______________________________ AAPAPGPGSGGPGPRVYFQSPPGAAGEGPG M A D P R V 7 1 0 1 0 0 0 8 0 0 1 0 0 0 5 2 1 0 0 0 0 0 26 0 2116.0297 Q96C90 Q96C90 2 27 PPP1R14B Protein phosphatase 1 regulatory subunit 14B yes yes 3 3.2501E-31 101.41 By MS/MS 1 0.53167 0.50935 NaN 1 Median 0.53167 0.50935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24864000 15943000 8920800 24864000 15943000 8920800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 609 3617 632 2904 2968 2968 1 ADSLLAVVK LDLASESTAHAQSSKADSLLAVVKREPAEQ HAQSSKADSLLAVVKREPAEQPGDGERTDC K A D V K R 2 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 914.54368 Q15424;Q14151 Q15424 286 294 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 2 0.0008858 92.47 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 3 1.2048 1.0825 13.098 12 Median NaN NaN NaN 0 0 Median 1.5305 1.3478 5.2933 2 0 Median 1.1169 1.1925 NaN 1 0 Median 1.3959 1.2263 6.3478 3 0 Median 1.0413 1.066 7.7445 3 1 Plateau 1.1737 1.006 3.8918 3 0 Median 111400000 54866000 56534000 0 0 0 1594000 569290 1024700 13449000 5787100 7661600 4221200 1802200 2418900 81183000 41787000 39396000 10953000 4919600 6033100 610 2951;2859 633 2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916 2969;2970;2971;2972;2973;2974;2975;2976;2977;2978 2973 10 ADSLLAVVKR LDLASESTAHAQSSKADSLLAVVKREPAEQ AQSSKADSLLAVVKREPAEQPGDGERTDCE K A D K R E 2 1 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 10 1 1070.6448 Q15424;Q14151 Q15424 286 295 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 2 0.00070756 111.95 By MS/MS By MS/MS 2 1 0.92398 0.97723 15.507 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9181 1.0274 7.0741 2 2 Median 0.92398 0.79673 NaN 1 1 Median 57886000 28876000 29010000 0 0 0 0 0 0 0 0 0 0 0 0 51672000 25881000 25791000 6214300 2995200 3219100 611 2951;2859 634 2917;2918;2919 2979;2980;2981 2980 3 ADSLVEGTSSR EGKQHSSDSFDDAFKADSLVEGTSSRYSMY DAFKADSLVEGTSSRYSMYNSVSQKLMAKM K A D S R Y 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 3 1 0 0 1 0 0 11 0 1120.536 Q8N1G2;Q5T7F5 Q8N1G2 73 83 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes no 2 0.0059412 45.161 By MS/MS 1 1.3527 1.2312 NaN 1 Median NaN NaN NaN 0 0 Median 1.3527 1.2312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 749710 314840 434870 0 0 0 749710 314840 434870 0 0 0 0 0 0 0 0 0 0 0 0 612 3358 635 2920 2982 2982 1 ADSRDPASDQMQHWK ______________________________ ADSRDPASDQMQHWKEQRAAQKADVLTTGA M A D W K E 2 1 0 3 0 2 0 0 1 0 0 1 1 0 1 2 0 1 0 0 0 0 15 1 1770.7744 P04040 P04040 2 16 CAT Catalase yes yes 3 0.000239 57.414 By MS/MS By matching 1 1 1.0473 1.0055 33.118 2 Median 0.79323 0.79558 NaN 1 0 Median 1.3828 1.2708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13651000 7088600 6562800 11925000 6522300 5403100 1726000 566320 1159600 0 0 0 0 0 0 0 0 0 0 0 0 613 1841 636 2921;2922 2983;2984 2984 2 ADSWVEKEEPAPSN RLTPLQLEIQRVVEKADSWVEKEEPAPSN_ KADSWVEKEEPAPSN_______________ K A D S N - 2 0 1 1 0 0 3 0 0 0 0 1 0 0 2 2 0 1 0 1 0 0 14 1 1557.6947 Q8N163;H0YB24 Q8N163 910 923 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.0012847 74.841 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.71161 0.66223 9.4373 5 Median 0.71161 0.69688 NaN 1 0 Median 0.90215 0.77485 NaN 1 0 Median 0.56853 0.61858 0.92028 2 0 Median 0.7853 0.66223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22885000 13402000 9483000 4368100 2435200 1932900 4229800 2086200 2143500 12663000 8072500 4590900 1623400 807760 815620 0 0 0 0 0 0 614 3354 637 2923;2924;2925;2926;2927 2985;2986;2987;2988;2989;2990 2988 6 ADTGLETSTR RGQNSASRGGSQRGRADTGLETSTRSRNSK SQRGRADTGLETSTRSRNSKTAVSASRNMS R A D T R S 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 3 0 0 0 0 0 10 0 1049.4989 P49959 P49959 595 604 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.029185 34.387 By MS/MS By matching 1 1 1.0555 1.0004 3.0523 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91916 0.97899 NaN 1 0 Median 1.2121 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2432800 1159200 1273700 0 0 0 0 0 0 2103500 1004500 1099000 329330 154670 174660 0 0 0 0 0 0 615 2407 638 2928;2929 2991 2991 1 ADTLDPALLRPGR FDQNVNVKVIMATNRADTLDPALLRPGRLD NRADTLDPALLRPGRLDRKIEFPLPDRRQK R A D G R L 2 2 0 2 0 0 0 1 0 0 3 0 0 0 2 0 1 0 0 0 0 0 13 1 1393.7678 P43686 P43686 314 326 PSMC4 26S protease regulatory subunit 6B yes yes 3 0.0030654 36.447 By MS/MS By matching 1 1 0.494 0.50877 73.856 2 Median 0.29885 0.3018 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81657 0.85768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8686900 6588700 2098200 4240200 3705100 535120 0 0 0 4446700 2883600 1563000 0 0 0 0 0 0 0 0 0 616 2327 639 2930;2931 2992 2992 1 ADTLIGEK A D E K 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 845.44945 REV__A0A0A0MRA3 yes no 2 0.003424 97.071 By MS/MS 2 1.5491 1.3173 42.107 2 Median NaN NaN NaN 0 0 Median 1.5491 1.3173 42.107 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8266700 3624500 4642200 0 0 0 8266700 3624500 4642200 0 0 0 0 0 0 0 0 0 0 0 0 + 617 4507 640 2932;2933 2993;2994 2993 2 ADTLTDEINFLR DVDAAYMNKVELQAKADTLTDEINFLRALY QAKADTLTDEINFLRALYDAELSQMQTHIS K A D L R A 1 1 1 2 0 0 1 0 0 1 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1406.7042 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 288 299 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 1.8607E-07 122.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 6 4 3 1 0.12971 0.12197 172.92 19 Median 0.10054 0.10059 160.3 4 4 Median 0.066601 0.057484 194.65 2 2 Median 0.13019 0.13183 242.83 6 6 Median 0.12971 0.11309 186.49 3 3 Median 0.074766 0.079385 85.968 3 3 Median 0.33935 0.28854 NaN 1 1 Median 78364000 65512000 12852000 18316000 16736000 1579500 5306700 4927700 378910 38500000 28748000 9751600 5023300 4764200 259090 9963300 9330400 632930 1255100 1005400 249660 + 618 741;748;766 641 2934;2935;2936;2937;2938;2939;2940;2941;2942;2943;2944;2945;2946;2947;2948;2949;2950;2951;2952;2953 2995;2996;2997;2998;2999;3000;3001;3002;3003;3004;3005;3006;3007;3008;3009;3010;3011;3012;3013;3014;3015 3003 21 ADTLTLEER KRLSKVVNIVPVIAKADTLTLEERVHFKQR VPVIAKADTLTLEERVHFKQRITADLLSNG K A D E R V 1 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1046.5244 Q9UHD8;K7EL40 Q9UHD8 446 454 SEPT9 Septin-9 yes no 2 5.7529E-05 151.5 By matching By matching By MS/MS By MS/MS 1 1 2 4 1.1411 1.067 26.783 8 Median 0.59559 0.60396 NaN 1 0 Median 0.80508 0.69417 NaN 1 0 Median 1.0187 1.0406 6.6051 2 0 Median 1.3663 1.1756 8.0905 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91250000 42429000 48821000 1528500 884380 644130 1394600 690540 704030 69536000 33334000 36202000 18791000 7520000 11271000 0 0 0 0 0 0 619 4276 642 2954;2955;2956;2957;2958;2959;2960;2961 3016;3017;3018;3019;3020;3021 3017 6 ADTQTYQPYNK DFIDDLADLSCLVYRADTQTYQPYNKDWIK LVYRADTQTYQPYNKDWIKEKIYVLLRRQA R A D N K D 1 0 1 1 0 2 0 0 0 0 0 1 0 0 1 0 2 0 2 0 0 0 11 0 1327.6044 P84090 P84090 74 84 ERH Enhancer of rudimentary homolog yes yes 2 0.0092274 39.022 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 2 1.0068 0.91115 8.736 8 Median 0.79894 0.75176 NaN 1 0 Median 1.0504 0.88369 NaN 1 0 Median 0.98908 0.97574 NaN 1 0 Median 1.1502 0.93957 NaN 1 0 Median 0.82885 0.88282 8.796 2 0 Median 1.0877 0.88988 7.6683 2 0 Median 12660000 6612800 6046900 814290 472270 342020 1271900 663050 608830 2596400 1448700 1147700 791480 412620 378860 2562700 1432800 1129900 4623000 2183400 2439600 620 2666 643 2962;2963;2964;2965;2966;2967;2968;2969 3022;3023 3022 2 ADTQTYQPYNKDWIK DFIDDLADLSCLVYRADTQTYQPYNKDWIK ADTQTYQPYNKDWIKEKIYVLLRRQAQQAG R A D I K E 1 0 1 2 0 2 0 0 0 1 0 2 0 0 1 0 2 1 2 0 0 0 15 1 1869.8897 P84090 P84090 74 88 ERH Enhancer of rudimentary homolog yes yes 2;3 6.0532E-13 171.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 6 3 0.95585 0.91628 17.468 16 Median 0.87228 0.81686 0.42077 2 0 Median 1.0514 0.91142 1.8651 2 0 Median 0.92633 0.92208 2.0057 2 0 Median 1.2218 1.0248 NaN 1 0 Median 0.91374 0.91464 28.387 6 0 Median 1.0254 0.9519 6.4938 3 0 Median 895820000 451980000 443840000 122480000 63353000 59130000 87930000 39822000 48108000 255270000 131010000 124260000 5419900 2624600 2795300 390560000 198420000 192140000 34163000 16757000 17406000 621 2666 644 2970;2971;2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982;2983;2984;2985 3024;3025;3026;3027;3028;3029;3030;3031;3032;3033;3034;3035;3036;3037;3038;3039;3040;3041;3042 3038 19 ADTQTYQPYNKDWIKEK DFIDDLADLSCLVYRADTQTYQPYNKDWIK TQTYQPYNKDWIKEKIYVLLRRQAQQAGK_ R A D E K I 1 0 1 2 0 2 1 0 0 1 0 3 0 0 1 0 2 1 2 0 0 0 17 2 2127.0273 P84090 P84090 74 90 ERH Enhancer of rudimentary homolog yes yes 3 0.001949 28.627 By MS/MS By MS/MS 1 1 0.63282 0.70271 19.27 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72638 0.80529 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55131 0.6132 NaN 1 0 Median NaN NaN NaN 0 0 Median 11382000 6511200 4870400 0 0 0 0 0 0 2663700 1280400 1383300 0 0 0 8717900 5230800 3487100 0 0 0 622 2666 645 2986;2987 3043;3044 3044 2 ADTTPNGPQGAGAVQFMMTNK ______________________________ GPQGAGAVQFMMTNKLDTAMWLSRLFTVYC M A D N K L 3 0 2 1 0 2 0 3 0 0 0 1 2 1 2 0 3 0 0 1 0 0 21 0 2134.9776 P57088;D6RAA6;J3KN43;D6RBY2 P57088 2 22 TMEM33 Transmembrane protein 33 yes no 2 1.6774E-08 56.482 By MS/MS 1 1.1811 1.1698 NaN 1 Median 1.1811 1.1698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2575800 1563200 1012700 2575800 1563200 1012700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 623 2516 646 2988 3045 3045 1 ADTTTPTTSAITASR PPTPPVVKKKGVKRKADTTTPTTSAITASR ADTTTPTTSAITASRSESPPPLSDPKQAKV K A D S R S 3 1 0 1 0 0 0 0 0 1 0 0 0 0 1 2 6 0 0 0 0 0 15 0 1492.7369 Q15059 Q15059 246 260 BRD3 Bromodomain-containing protein 3 yes yes 2 4.5279E-06 87.363 By MS/MS 1 0.4643 0.49781 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4643 0.49781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679400 1867900 1811500 0 0 0 0 0 0 3679400 1867900 1811500 0 0 0 0 0 0 0 0 0 624 2923 647 2989 3046 3046 1 ADVAAAVGDLAEDR A D D R 5 1 0 3 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 14 0 1371.663 REV__A0A087X0B7 yes no 2 0.00099478 52.79 By MS/MS By matching By matching By matching 6 2 1 1 1.0339 0.97727 38.831 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0709 1.0636 25.013 6 0 Median 0.71946 0.74858 93.098 2 0 Median 0.89157 0.89799 NaN 1 0 Median 0.99807 0.87984 NaN 1 0 Median 62983000 28240000 34743000 0 0 0 0 0 0 59324000 26360000 32964000 1273800 692320 581460 2341400 1164000 1177400 44387 24093 20294 + 625 4506 648 2990;2991;2992;2993;2994;2995;2996;2997;2998;2999 3047;3048;3049 3048 3 ADVDISGPK GFKAEGPEVDVNLPKADVDISGPKIDVTAP DVNLPKADVDISGPKIDVTAPDVSIEEPEG K A D P K I 1 0 0 2 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 9 0 900.45526 Q09666 Q09666 776 784 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.001536 80.438 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.98281 0.97634 33.728 4 Median 0.89992 0.90143 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5676 1.7435 NaN 1 1 Median 0.95638 0.81567 NaN 1 0 Median 1.01 1.0575 NaN 1 0 Median NaN NaN NaN 0 0 Median 33733000 15663000 18071000 11334000 6165400 5168800 0 0 0 6462100 2126800 4335300 2420200 1273400 1146800 13517000 6097000 7419700 0 0 0 626 2749 649 3000;3001;3002;3003 3050;3051;3052;3053 3050 4 ADVDKIIQEPPHKK TRLSMWDRPDDLIGRADVDKIIQEPPHKKG RADVDKIIQEPPHKKGMEELKKLRHPTPTM R A D K K G 1 0 0 2 0 1 1 0 1 2 0 3 0 0 2 0 0 0 0 1 0 0 14 2 1616.8886 O14776;G3V220 O14776 566 579 TCERG1 Transcription elongation regulator 1 yes no 3;4 0.00026917 59.248 By MS/MS By matching 2 1 0.65767 0.75754 6.512 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61695 0.74135 9.039 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69721 0.75754 NaN 1 0 Median 11882000 6435700 5445900 0 0 0 0 0 0 11510000 6221800 5287700 0 0 0 0 0 0 372080 213850 158220 627 1494 650 3004;3005;3006 3054;3055;3056;3057 3057 4 ADVDVQPYAFTTK YPNVGKSSFINKVTRADVDVQPYAFTTKSL TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ R A D T K S 2 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 2 0 1 2 0 0 13 0 1453.7089 Q9BZE4 Q9BZE4 191 203 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 1.0534E-06 113.63 By MS/MS By matching 4 3 1.0949 1.0857 13.901 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0337 1.0281 9.1985 4 0 Median 1.3991 1.1766 19.127 3 0 Median 62461000 30017000 32444000 0 0 0 0 0 0 0 0 0 0 0 0 56217000 27293000 28925000 6243400 2723800 3519500 628 3898 651 3007;3008;3009;3010;3011;3012;3013 3058;3059;3060;3061;3062 3060 5 ADVDVSGPK GFKGEGPEVDVKLPKADVDVSGPKMDAEVP DVKLPKADVDVSGPKMDAEVPDVNIEGPDA K A D P K M 1 0 0 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 2 0 0 9 0 886.43961 Q09666 Q09666 1409 1417 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0049967 58.981 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1 1.0003 0.94406 18.564 8 Median 0.75285 0.74078 31.335 2 0 Median 1.018 0.89056 NaN 1 0 Median 1.0305 1.1194 NaN 1 0 Median 1.0322 0.97469 1.558 2 0 Median 0.93413 0.97887 NaN 1 0 Median 1.0489 0.8995 NaN 1 0 Median 14294000 7131500 7162200 713210 399570 313650 2172000 1037400 1134600 3027800 1454400 1573400 6180700 3047200 3133500 1166700 671500 495240 1033200 521420 511780 629 2749 652 3014;3015;3016;3017;3018;3019;3020;3021 3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073 3073 11 ADVEEEFLAFR TPTNTKQRPKRSLKKADVEEEFLAFRKLTP SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K A D F R K 2 1 0 1 0 0 3 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 11 0 1324.6299 P46013 P46013 1884 1894 MKI67 Antigen KI-67 yes yes 2 0.00017515 78.934 By matching By MS/MS By matching 1 2 2 1.3638 1.2036 20.706 5 Median NaN NaN NaN 0 0 Median 1.3638 1.1845 NaN 1 0 Median 1.2723 1.4183 15.73 2 0 Median 1.1711 1.0337 21.52 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3645100 1594800 2050300 0 0 0 83639 34300 49339 3231000 1408800 1822200 330400 151620 178780 0 0 0 0 0 0 630 2335 653 3022;3023;3024;3025;3026 3074;3075;3076 3075 3 ADVEEEFLAFRK TPTNTKQRPKRSLKKADVEEEFLAFRKLTP LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K A D R K L 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1884 1895 MKI67 Antigen KI-67 yes yes 3 0.0009014 45.257 By MS/MS 2 1.1256 1.3191 5.6058 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1256 1.3191 5.6058 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4921000 2179500 2741500 0 0 0 0 0 0 4921000 2179500 2741500 0 0 0 0 0 0 0 0 0 631 2335 654 3027;3028 3077;3078 3077 2 ADVEEEFLALR TPTSTKQWPKRSLRKADVEEEFLALRKLTP SLRKADVEEEFLALRKLTPSAGKAMLTPKP K A D L R K 2 1 0 1 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1290.6456 P46013 P46013 1154 1164 MKI67 Antigen KI-67 yes no 2 0.005015 46.891 By MS/MS By matching 2 1 1.2032 1.0963 10.797 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1121 1.1959 12.29 2 0 Median 1.2032 1.0703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4858000 2386700 2471300 0 0 0 0 0 0 4718700 2326400 2392300 139320 60353 78963 0 0 0 0 0 0 632 2335 655 3029;3030;3031 3079;3080 3080 2 ADVEEEFLALRK TPTSTKQWPKRSLRKADVEEEFLALRKLTP LRKADVEEEFLALRKLTPSAGKAMLTPKPA K A D R K L 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1154 1165 MKI67 Antigen KI-67 yes no 3 0.0032023 35.737 By MS/MS 1 1.1277 1.3102 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1277 1.3102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31129000 14673000 16456000 0 0 0 0 0 0 31129000 14673000 16456000 0 0 0 0 0 0 0 0 0 633 2335 656 3032 3081 3081 1 ADVFHAYLSLLK PALISRFKEREENVKADVFHAYLSLLKQTR NVKADVFHAYLSLLKQTRPVQSWLCDPDAM K A D L K Q 2 0 0 1 0 0 0 0 1 0 3 1 0 1 0 1 0 0 1 1 0 0 12 0 1375.75 Q86VP6;A0A0C4DGH5;H0YH27 Q86VP6 392 403 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.00060419 70.056 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3331 1.1678 5.1371 4 Median 1.311 1.2798 NaN 1 0 Median 1.3605 1.1635 NaN 1 0 Median 1.0512 1.1392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3555 1.1722 NaN 1 0 Median 9961800 4538300 5423500 4816700 2111600 2705100 1200700 525250 675450 3801400 1851000 1950500 0 0 0 0 0 0 142950 50479 92472 634 3288 657 3033;3034;3035;3036 3082;3083 3082 2 ADVFPGNDSTASQDVANR ______________________________ FPGNDSTASQDVANRFARKGALRQKNVHEV M A D N R F 3 1 2 3 0 1 0 1 0 0 0 0 0 1 1 2 1 0 0 2 0 0 18 0 1862.8395 P17252;J3KRN5 P17252 2 19 PRKCA Protein kinase C alpha type yes no 2 6.9801E-11 99.531 By MS/MS 1 0.89396 0.86591 NaN 1 Median 0.89396 0.86591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3576100 1638700 1937500 3576100 1638700 1937500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 635 2039 658 3037 3084;3085 3084 2 ADVIQATGDAICIFR GVDPVEAFAQNVLSKADVIQATGDAICIFR ADVIQATGDAICIFRELQCLTPRGRYDIRI K A D F R E 3 1 0 2 1 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 15 0 1648.8243 Q08945;E9PMD4 Q08945 189 203 SSRP1 FACT complex subunit SSRP1 yes no 2 0.00050726 60.434 By MS/MS 1 1.1563 1.2149 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1563 1.2149 NaN 1 1 Median NaN NaN NaN 0 0 Median 4330300 2071200 2259100 0 0 0 0 0 0 0 0 0 0 0 0 4330300 2071200 2259100 0 0 0 636 2743 659 3038 3086 3086 1 ADVLDLHEAGGEDFAMDEDGDESIHK ______________________________ EDFAMDEDGDESIHKLKEKAKKRKGRGFGS M A D H K L 3 0 0 6 0 0 4 3 2 1 2 1 1 1 0 1 0 0 0 1 0 0 26 0 2814.1926 Q9Y5S9 Q9Y5S9 2 27 RBM8A RNA-binding protein 8A yes yes 3 1.2492E-44 130.83 By matching By MS/MS By matching 1 5 3 0.99694 0.96902 13.502 9 Median 0.91543 0.85403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99178 1.0836 8.8661 5 0 Median 1.1445 0.93785 10.528 3 0 Median 168920000 81992000 86927000 4214300 2210700 2003600 0 0 0 0 0 0 0 0 0 159900000 77775000 82129000 4800100 2005800 2794300 637 4469 660;661 3039;3040;3041;3042;3043;3044;3045;3046;3047 3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097 3088 1995 11 ADVLSEEAILK HFMKAFQKIVVLFYKADVLSEEAILKWYKE LFYKADVLSEEAILKWYKEAHVAKGKSVFL K A D L K W 2 0 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1186.6445 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4 E7ETZ4 370 380 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.037765 28.727 By MS/MS By matching 1 2 0.90208 0.79769 47.524 3 Median 0.83572 0.79769 NaN 1 0 Median 1.3681 1.1879 58.821 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5477700 2651600 2826100 3333600 1870600 1463000 2144100 780990 1363100 0 0 0 0 0 0 0 0 0 0 0 0 638 892 662 3048;3049;3050 3098 3098 1 ADVLTTGAGNPVGDK SDQMQHWKEQRAAQKADVLTTGAGNPVGDK ADVLTTGAGNPVGDKLNVITVGPRGPLLVQ K A D D K L 2 0 1 2 0 0 0 3 0 0 1 1 0 0 1 0 2 0 0 2 0 0 15 0 1413.71 P04040 P04040 24 38 CAT Catalase yes yes 2 6.7656E-06 86.313 By MS/MS 2 0.95441 0.8172 31.265 2 Median NaN NaN NaN 0 0 Median 0.95441 0.8172 31.265 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6352100 3080600 3271500 0 0 0 6352100 3080600 3271500 0 0 0 0 0 0 0 0 0 0 0 0 639 1841 663 3051;3052 3099;3100;3101 3099 3 ADVLTTGAGNPVGDKLNVITVGPR SDQMQHWKEQRAAQKADVLTTGAGNPVGDK NPVGDKLNVITVGPRGPLLVQDVVFTDEMA K A D P R G 2 1 2 2 0 0 0 4 0 1 2 1 0 0 2 0 3 0 0 4 0 0 24 1 2363.2809 P04040 P04040 24 47 CAT Catalase yes yes 3 2.3936E-16 68.552 By MS/MS By matching 1 2 0.82143 0.7459 17.414 3 Median 0.66951 0.67105 NaN 1 0 Median 0.93668 0.83869 16.583 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17531000 10009000 7522300 17096000 9733800 7361800 435450 274940 160510 0 0 0 0 0 0 0 0 0 0 0 0 640 1841 664 3053;3054;3055 3102;3103 3103 2 ADVQSIIGLQR VGRMFKQFNKLTEDKADVQSIIGLQRFFET TEDKADVQSIIGLQRFFETRMNEAFGDTKF K A D Q R F 1 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1198.667 Q13263;M0R0K9 Q13263 780 790 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.00010725 148.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.0201 0.88226 14.233 7 Median 0.81541 0.78507 NaN 1 0 Median 1.0309 0.88128 0.15625 2 0 Median 0.72938 0.7684 26.248 2 0 Median 1.1052 0.94668 1.2304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92950000 47170000 45780000 16564000 9244500 7319600 30525000 15260000 15265000 39114000 19599000 19515000 6747000 3066700 3680400 0 0 0 0 0 0 641 2802 665 3056;3057;3058;3059;3060;3061;3062 3104;3105;3106;3107;3108;3109;3110 3104 7 ADVVESWIGEK AKLDENSAFLQFNWKADVVESWIGEKENSL FNWKADVVESWIGEKENSLKTDDYGRDLSS K A D E K E 1 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 11 0 1231.6085 A0A0D9SF54;Q13813 Q13813 1985 1995 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00035193 76.465 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0385 0.9944 4.1249 5 Median NaN NaN NaN 0 0 Median 1.0618 0.93524 NaN 1 0 Median 0.94752 1.0439 NaN 1 0 Median 1.0682 0.98775 0.94921 2 0 Median 0.97017 1.0171 NaN 1 1 Median NaN NaN NaN 0 0 Median 29241000 14650000 14592000 0 0 0 1714700 812170 902550 19241000 9773000 9468100 3247600 1531900 1715800 5038100 2532700 2505400 0 0 0 642 264;2838 666 3063;3064;3065;3066;3067 3111;3112;3113;3114 3112 4 ADVVESWIGEKENSLK AKLDENSAFLQFNWKADVVESWIGEKENSL DVVESWIGEKENSLKTDDYGRDLSSVQTLL K A D L K T 1 0 1 1 0 0 3 1 0 1 1 2 0 0 0 2 0 1 0 2 0 0 16 1 1802.905 A0A0D9SF54;Q13813 Q13813 1985 2000 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.00020158 78.096 By MS/MS By matching By MS/MS By matching 2 2 3 1 1.0601 1.1677 20.061 8 Median 1.1935 1.2313 1.3997 2 0 Median 1.1419 1.0853 18.669 2 0 Median 0.96402 1.1184 27.939 3 0 Median 0.92117 0.85594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57358000 28310000 29048000 10934000 4481400 6452200 3914400 1832100 2082300 42288000 21888000 20400000 222710 109060 113650 0 0 0 0 0 0 643 264;2838 667 3068;3069;3070;3071;3072;3073;3074;3075 3115;3116;3117;3118;3119;3120 3115 6 ADVVESWIGEKENSLKTDDYGR AKLDENSAFLQFNWKADVVESWIGEKENSL IGEKENSLKTDDYGRDLSSVQTLLTKQETF K A D G R D 1 1 1 3 0 0 3 2 0 1 1 2 0 0 0 2 1 1 1 2 0 0 22 2 2510.1925 A0A0D9SF54;Q13813 Q13813 1985 2006 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 2.0355E-13 84.919 By MS/MS By MS/MS 2 3 0.94061 1.0466 27.224 5 Median 1.293 1.3868 41.448 2 0 Median NaN NaN NaN 0 0 Median 0.91848 1.0466 14.459 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20201000 10391000 9810800 7986100 3925200 4060900 0 0 0 12215000 6465400 5749900 0 0 0 0 0 0 0 0 0 644 264;2838 668 3076;3077;3078;3079;3080 3121;3122;3123;3124;3125 3123 5 ADVVVSGPK SLKGEGPEVDVNLPKADVVVSGPKVDIEAP DVNLPKADVVVSGPKVDIEAPDVSLEGPEG K A D P K V 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 3 0 0 9 0 870.48108 Q09666 Q09666 1153 1161 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0017805 77.732 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1.0415 0.94359 11.395 8 Median 0.94095 0.93266 NaN 1 0 Median 1.0394 0.91038 12.898 2 0 Median 1.0602 1.1385 0.7244 2 0 Median 0.99564 0.92776 4.0395 2 0 Median NaN NaN NaN 0 0 Median 1.0363 0.88809 NaN 1 0 Median 15790000 7369600 8420700 1383700 628470 755210 5635200 2627800 3007300 4530500 2081500 2448900 2353000 1094100 1258900 0 0 0 1888000 937680 950270 645 2749 669 3081;3082;3083;3084;3085;3086;3087;3088 3126;3127;3128;3129;3130;3131 3128 6 ADWWTNTAHYNR PTPIENMILRYVKAKADWWTNTAHYNRERI KAKADWWTNTAHYNRERIRRGATVDKTVCK K A D N R E 2 1 2 1 0 0 0 0 1 0 0 0 0 0 0 0 2 2 1 0 0 0 12 0 1533.6749 Q6P2Q9;I3L0J9 Q6P2Q9 747 758 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 1.6172E-21 195.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 3 3 3 1.2168 1.0893 15.212 17 Median 1.283 1.2022 9.2837 3 0 Plateau 1.325 1.1245 4.4953 2 0 Median 0.92868 1.0124 1.2137 3 0 Median 1.397 1.2281 11.809 3 0 Plateau 1.3165 1.3941 24.124 3 0 Median 1.4 1.1579 18.049 3 0 Plateau 91141000 42426000 48716000 16395000 7393800 9001200 6504100 2579900 3924200 43150000 21567000 21583000 5073800 2179500 2894300 18696000 8117700 10578000 1322700 587670 735080 646 3157 670 3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105 3132;3133;3134;3135;3136;3137;3138;3139;3140;3141;3142;3143;3144 3136 13 ADYEIASK MDLGECLKVHDLALRADYEIASKEQDFFFE VHDLALRADYEIASKEQDFFFELDAMDHLQ R A D S K E 2 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 8 0 895.42871 A0A0A6YYJ8;Q9NQ29;A8MYV2;B8ZZ12;Q9Y383 A0A0A6YYJ8 135 142 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.03399 52.716 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.0163 0.98901 9.4891 5 Median 0.98374 0.96004 NaN 1 0 Median 1.386 1.1803 NaN 1 0 Median 1.0163 1.1271 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0092 0.98025 1.2582 2 0 Median NaN NaN NaN 0 0 Median 6922500 3035600 3886900 1555400 628270 927150 1056100 431200 624860 684550 289730 394820 0 0 0 3626500 1686400 1940100 0 0 0 647 206;4407;4058 671 3106;3107;3108;3109;3110;3111 3145;3146;3147 3145 3 ADYNLTR LELALSITRAVRSLRADYNLTRIRPDCFLE TRAVRSLRADYNLTRIRPDCFLEVADEATG R A D T R I 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 7 0 851.41373 P26640;A0A140T936 P26640 1123 1129 VARS Valine--tRNA ligase yes no 2 0.032902 48.561 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1.3381 1.1344 54.092 6 Median NaN NaN NaN 0 0 Median 1.1543 0.98163 27.853 2 0 Median 2.3099 2.8159 NaN 1 0 Median 1.2615 1.0765 NaN 1 0 Median 1.4317 1.992 NaN 1 0 Median 0.74551 0.6805 NaN 1 0 Median 5880000 2569800 3310200 0 0 0 3517600 1552400 1965200 222010 52689 169320 993490 432810 560670 872510 355610 516900 274420 176280 98146 648 2148 672 3112;3113;3114;3115;3116;3117 3148 3148 1 ADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQR ______________________________ GGGGVNDAFKDALQRARQIAAKIGGDAGTS M A D Q R A 4 1 1 3 0 1 0 12 0 0 1 1 0 1 3 4 1 0 1 2 0 0 36 1 3219.4817 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 2 37 FUBP1 Far upstream element-binding protein 1 no no 3 6.9702E-10 46.082 By MS/MS By matching 1 1 0.79796 0.86615 6.2077 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78088 0.82896 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81542 0.90502 NaN 1 0 Median NaN NaN NaN 0 0 Median 8313700 4520400 3793200 0 0 0 0 0 0 6745700 3710600 3035100 0 0 0 1568000 809840 758160 0 0 0 649 3599;723 673 3118;3119 3149 3149 1 AEAAAGAAGILLR ______________________________ GRAEAAAGAAGILLRYLQEQNRPYSSQDVF R A E L R Y 6 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1182.6721 Q9P2W1;K7ELD8;K7EK12;K7EQS1 Q9P2W1 6 18 PSMC3IP Homologous-pairing protein 2 homolog yes no 2 0.00015371 94.692 By MS/MS 1 1.2526 1.2037 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2526 1.2037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8352700 3958300 4394400 0 0 0 0 0 0 8352700 3958300 4394400 0 0 0 0 0 0 0 0 0 650 4230 674 3120 3150 3150 1 AEAAASALADADADLEER PSTGGSLSVAAGGKKAEAAASALADADADL AASALADADADLEERLKNLRRD________ K A E E R L 8 1 0 3 0 0 3 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 18 0 1787.8174 O43633;M0R1T5 O43633 198 215 CHMP2A Charged multivesicular body protein 2a yes no 2 1.0868E-12 99.531 By MS/MS 3 1.4531 1.4342 23.376 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4531 1.4342 23.376 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11097000 4171900 6924700 0 0 0 0 0 0 11097000 4171900 6924700 0 0 0 0 0 0 0 0 0 651 1579 675 3121;3122;3123 3151;3152;3153 3151 3 AEAAEKGDVGLVAENSR KAVAQATGRQLESVRAEAAEKGDVGLVAEN AAEKGDVGLVAENSRSTQRLMLPPPPLTAS R A E S R S 4 1 1 1 0 0 3 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 17 1 1714.8486 F5GZ28;P18858;M0R0Q7 F5GZ28 303 319 LIG1 DNA ligase;DNA ligase 1 yes no 3 0.036752 14.159 By MS/MS By matching By matching By matching 1 1 1 1 0.64413 0.67162 11.57 4 Median 0.56696 0.58984 NaN 1 0 Median 0.69763 0.66568 NaN 1 0 Median 0.59474 0.67761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89324 0.78231 NaN 1 0 Median 8198000 4806200 3391800 4132400 2296900 1835500 1162500 773250 389280 1999700 1253700 746050 0 0 0 0 0 0 903380 482330 421050 652 1014 676 3124;3125;3126;3127 3154 3154 1 AEAAGLIGWLK VSWVLRSVAEHPLSRAEAAGLIGWLKSHIL PLSRAEAAGLIGWLKSHILPHPVVVADLLK R A E L K S 3 0 0 0 0 0 1 2 0 1 2 1 0 0 0 0 0 1 0 0 0 0 11 0 1127.6339 O60287 O60287 2116 2126 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.008153 41.029 By MS/MS By matching 2 1 0.99028 1.079 21.181 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89967 0.9571 25.113 2 0 Median NaN NaN NaN 0 0 Median 0.75192 0.78363 NaN 1 0 Median NaN NaN NaN 0 0 Median 2183800 1029100 1154700 0 0 0 0 0 0 1958600 902710 1055900 0 0 0 225120 126370 98752 0 0 0 653 1610 677 3128;3129;3130 3155 3155 1 AEAALEEESR HNSPAYLAYINAKSRAEAALEEESRQRQSR NAKSRAEAALEEESRQRQSRMEKGEPYMSI R A E S R Q 3 1 0 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1103.5095 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85 Q969G3 149 158 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.0017405 62.823 By MS/MS By MS/MS By MS/MS 3 1 1 0.83972 0.87294 24.531 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83972 0.87294 13.789 3 2 Median 1.2548 1.0847 NaN 1 0 Median 0.57582 0.57876 NaN 1 1 Median NaN NaN NaN 0 0 Median 5143600 2685100 2458500 0 0 0 0 0 0 3369000 1794500 1574500 991740 416530 575210 782860 474060 308800 0 0 0 654 389 678 3131;3132;3133;3134;3135 3156;3157;3158;3159;3160;3161 3158 6 AEAAVESAVAGPQGR PSGFAVLASCARAARAEAAVESAVAGPQGR AEAAVESAVAGPQGREQDVSRILQALHECL R A E G R E 5 1 0 0 0 1 2 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 15 0 1411.7056 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 44 58 TRPV1;SHPK Sedoheptulokinase yes no 2 2.3613E-09 101.93 By MS/MS By MS/MS 1 1 0.95679 0.88721 3.9002 2 Median 0.865 0.86308 NaN 1 0 Median 1.0583 0.91202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4719200 2424200 2294900 2530700 1340200 1190500 2188500 1084100 1104400 0 0 0 0 0 0 0 0 0 0 0 0 655 219 679 3136;3137 3162;3163;3164 3163 3 AEAAVVAVAEKR ______________________________ KRKAEAAVVAVAEKREKLANGGEGMEEATV K A E K R E 5 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 12 1 1212.6826 A0A087WYP2;Q8IZQ5 A0A087WYP2 10 21 C11orf31;SELH Selenoprotein H yes no 3 0.0009014 45.257 By MS/MS 1 1.2104 1.2667 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2104 1.2667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1200900 441740 759120 0 0 0 0 0 0 1200900 441740 759120 0 0 0 0 0 0 0 0 0 656 85 680 3138 3165 3165 1 AEADKIYSFTDNAPSPSIGGSSR NGSSDPHQSRLASIKAEADKIYSFTDNAPS FTDNAPSPSIGGSSRLENTTPTQPLTPLHV K A E S R L 3 1 1 2 0 0 1 2 0 2 0 1 0 1 2 5 1 0 1 0 0 0 23 1 2369.1135 O15014 O15014 790 812 ZNF609 Zinc finger protein 609 yes yes 3 1.4157E-05 37.856 By MS/MS By matching 2 1 0.50348 0.60376 24.756 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41564 0.49893 26.969 2 0 Median 0.72422 0.65583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10161000 6628700 3532600 0 0 0 0 0 0 9912400 6491200 3421300 248780 137470 111310 0 0 0 0 0 0 657 1511 681 3139;3140;3141 3166 3166 1 AEAEAGSPRPDPR ATLTSLLAQAQAQARAEAEAGSPRPDPREA ARAEAEAGSPRPDPREALRAATMEVKVGRL R A E P R E 3 2 0 1 0 0 2 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 13 1 1351.648 P58107;A0A075B730 P58107 2502 2514 EPPK1 Epiplakin yes no 3 0.03048 21.301 By MS/MS By MS/MS By MS/MS 4 1 2 0.75036 0.7633 10.017 7 Median 0.78416 0.84534 9.222 4 0 Median 0.77711 0.72834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68173 0.73909 1.2263 2 0 Median NaN NaN NaN 0 0 Median 9146000 5122200 4023800 1626600 928300 698340 5396600 3067800 2328900 0 0 0 0 0 0 2122700 1126100 996580 0 0 0 658 2520 682 3142;3143;3144;3145;3146;3147;3148 3167;3168;3169;3170;3171;3172;3173;3174;3175;3176 3167 10 AEAEAQAEELSFPR VGDLAQFMVQNGLSRAEAEAQAEELSFPRS RAEAEAQAEELSFPRSVVEFLQGYIGVPHG R A E P R S 4 1 0 0 0 1 4 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 14 0 1546.7264 P11498 P11498 929 942 PC Pyruvate carboxylase, mitochondrial yes yes 2 1.8573E-19 145.91 By MS/MS 1 0.82004 0.79093 NaN 1 Median 0.82004 0.79093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8550000 4408400 4141700 8550000 4408400 4141700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 659 1967 683 3149 3177 3177 1 AEAERPEEQAEASGLK PGTGGPEDVLQPVQRAEAERPEEQAEASGL EAERPEEQAEASGLKKETDVVLKVDAQEAK R A E L K K 4 1 0 0 0 1 5 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 16 1 1713.817 Q02952 Q02952 1072 1087 AKAP12 A-kinase anchor protein 12 yes yes 3 4.9954E-06 84.508 By MS/MS 1 0.89886 0.83766 NaN 1 Median NaN NaN NaN 0 0 Median 0.89886 0.83766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4955800 2735900 2219900 0 0 0 4955800 2735900 2219900 0 0 0 0 0 0 0 0 0 0 0 0 660 2705 684 3150 3178;3179 3178 2 AEAERPEEQAEASGLKK PGTGGPEDVLQPVQRAEAERPEEQAEASGL AERPEEQAEASGLKKETDVVLKVDAQEAKT R A E K K E 4 1 0 0 0 1 5 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 17 2 1841.9119 Q02952 Q02952 1072 1088 AKAP12 A-kinase anchor protein 12 yes yes 3;4 4.7239E-11 104.88 By MS/MS By MS/MS 5 4 0.96503 1.0004 18.92 9 Median 0.82605 0.8732 22.381 5 0 Median 0.98715 1.0142 14.089 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52824000 27175000 25649000 20088000 10059000 10029000 32736000 17116000 15621000 0 0 0 0 0 0 0 0 0 0 0 0 661 2705 685 3151;3152;3153;3154;3155;3156;3157;3158;3159 3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191 3186 12 AEAESLYQSK AEVKAQYEDIAQKSKAEAESLYQSKYEELQ AQKSKAEAESLYQSKYEELQITAGRHGDSV K A E S K Y 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 10 0 1124.535 P04264;CON__P04264 P04264 367 376 KRT1 Keratin, type II cytoskeletal 1 yes no 2 2.0656E-11 140.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 11 4 6 2 2 0.11374 0.10036 112.12 26 Median 0.19693 0.19158 130.88 6 6 Median 0.092211 0.079519 57.131 9 9 Median 0.24468 0.25822 34.377 3 3 Median 0.03731 0.032538 94.527 6 6 Median 0.065364 0.076813 NaN 1 1 Median 0.015634 0.01339 NaN 1 1 Median 100320000 87274000 13047000 21970000 15698000 6271500 39698000 35913000 3785400 8145300 6971900 1173300 19680000 18079000 1601000 816780 750080 66706 10011000 9861700 149470 + 662 1848 686 3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172;3173;3174;3175;3176;3177;3178;3179;3180;3181;3182;3183;3184;3185;3186;3187;3188;3189;3190;3191;3192 3192;3193;3194;3195;3196;3197;3198;3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223;3224 3204 33 AEAESLYQSKYEELQITAGR AEVKAQYEDIAQKSKAEAESLYQSKYEELQ LYQSKYEELQITAGRHGDSVRNSKIEISEL K A E G R H 3 1 0 0 0 2 4 1 0 1 2 1 0 0 0 2 1 0 2 0 0 0 20 1 2285.1176 P04264;CON__P04264 P04264 367 386 KRT1 Keratin, type II cytoskeletal 1 yes no 3 3.0873E-39 143.46 By MS/MS By MS/MS 2 4 0.15068 0.17071 121.91 5 Median 0.084301 0.086754 51.342 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28446 0.29293 114.91 3 3 Median NaN NaN NaN 0 0 Median 65633000 58690000 6942200 42703000 40035000 2668000 0 0 0 0 0 0 0 0 0 22930000 18656000 4274200 0 0 0 + 663 1848 687 3193;3194;3195;3196;3197;3198 3225;3226;3227;3228;3229;3230 3225 6 AEAESMYQIK AEVKAQYEDIANRSRAEAESMYQIKYEELQ ANRSRAEAESMYQIKYEELQSLAGKHGDDL R A E I K Y 2 0 0 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 10 0 1168.5434 P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552 P05787 276 285 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.00025118 127.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 5 5 1.2183 1.1316 25.855 22 Median 1.3515 1.2533 42.492 2 0 Median 1.6442 1.4009 15.525 3 1 Median 1.1883 1.1425 10.51 3 0 Median 1.1378 1.0015 16.604 4 0 Median 1.6558 1.5963 14.796 5 1 Median 1.1177 0.92431 4.6258 5 3 Median 518520000 224740000 293780000 49354000 22580000 26774000 85732000 34898000 50834000 151600000 69236000 82361000 88304000 38928000 49376000 80657000 31278000 49378000 62882000 27822000 35060000 + 664 750;792 688;689 3199;3200;3201;3202;3203;3204;3205;3206;3207;3208;3209;3210;3211;3212;3213;3214;3215;3216;3217;3218;3219;3220 3231;3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257 3245 268;295 27 AEAESMYQIKYEELQSLAGK AEVKAQYEDIANRSRAEAESMYQIKYEELQ MYQIKYEELQSLAGKHGDDLRRTKTEISEM R A E G K H 3 0 0 0 0 2 4 1 0 1 2 2 1 0 0 2 0 0 2 0 0 0 20 1 2287.1042 P05787;CON__P05787;CON__H-INV:HIT000292931 P05787 276 295 KRT8 Keratin, type II cytoskeletal 8 yes no 3 1.6272E-10 88.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 5 3 1.2134 1.1719 24.114 11 Median 1.2134 1.1588 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62444 0.65453 NaN 1 0 Median 1.2338 1.1719 NaN 1 0 Median 1.3116 1.4517 10.001 5 0 Median 1.138 1.0143 10.041 3 0 Median 140640000 59572000 81070000 11824000 5216600 6607100 0 0 0 3779200 1804300 1974900 3597700 1561400 2036300 114170000 47621000 66549000 7271200 3368300 3902900 + 665 750 690;691 3221;3222;3223;3224;3225;3226;3227;3228;3229;3230;3231 3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271 3270 268 14 AEAESWYQTK AEVKAQYEEIAQRSRAEAESWYQTKYEELQ AQRSRAEAESWYQTKYEELQVTAGRHGDDL R A E T K Y 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 10 0 1211.5459 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 350 359 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0028032 58.981 By MS/MS 1 1.0913 0.89462 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0913 0.89462 NaN 1 0 Median 10316000 4798100 5518200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10316000 4798100 5518200 + 666 741;748;766 692 3232 3272;3273 3273 2 AEAETLPSLSITK IHELFVPENKLDHVRAEAETLPSLSITKLD VRAEAETLPSLSITKLDLQWVQVLSEGWAT R A E T K L 2 0 0 0 0 0 2 0 0 1 2 1 0 0 1 2 2 0 0 0 0 0 13 0 1358.7293 O95340 O95340 239 251 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.00056451 70.488 By MS/MS By matching 1 1 1.1019 0.99033 7.4923 2 Median 1.1064 1.0442 NaN 1 0 Median 1.0974 0.93923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13310000 6318400 6991400 9535000 4527800 5007200 3774800 1790600 1984200 0 0 0 0 0 0 0 0 0 0 0 0 667 1765 693 3233;3234 3274;3275 3275 2 AEAGAGSATEFQFR DTYRRSAVPPGADKKAEAGAGSATEFQFRG KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K A E F R G 4 1 0 0 0 1 2 2 0 0 0 0 0 2 0 1 1 0 0 0 0 0 14 0 1440.6634 P46783;Q9NQ39 P46783 140 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 2.8312E-68 244.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 2 3 1.1745 1.0245 27.242 14 Median 1.0427 1.0108 5.02 3 1 Median 1.2146 1.0104 51.819 4 0 Median 1.1101 1.0654 NaN 1 0 Median 1.1694 0.97349 NaN 1 0 Median 1.3083 1.3393 7.6496 2 1 Median 1.2822 1.0042 9.9849 3 0 Median 519550000 244080000 275470000 309570000 149580000 159990000 65455000 29357000 36098000 92217000 41493000 50724000 13121000 5866800 7253800 33032000 15009000 18023000 6159100 2770100 3389000 668 2346 694 3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248 3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295;3296 3282 21 AEAGDNLGALVR TVVTGIEMFHKSLERAEAGDNLGALVRGLK LERAEAGDNLGALVRGLKREDLRRGLVMVK R A E V R G 3 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1184.6149 P49411 P49411 316 327 TUFM Elongation factor Tu, mitochondrial yes yes 2 4.0931E-06 153.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.284 1.2001 117.14 8 Median 0.96446 0.89241 NaN 1 0 Median 1.275 1.0908 13.582 2 0 Median 1.6992 1.696 75.648 2 0 Median 6.5769 6.165 219.66 2 0 Median 1.1984 1.1994 NaN 1 0 Median NaN NaN NaN 0 0 Median 225770000 101450000 124320000 84267000 40762000 43505000 40603000 17881000 22722000 46173000 21917000 24256000 45693000 16990000 28703000 9036800 3903500 5133300 0 0 0 669 2382 695 3249;3250;3251;3252;3253;3254;3255;3256 3297;3298;3299;3300;3301;3302;3303;3304;3305;3306 3298 10 AEAGEQPGTAER KRSRRRGVGADPEARAEAGEQPGTAERALL EARAEAGEQPGTAERALLRDQPRGRGQRGA R A E E R A 3 1 0 0 0 1 3 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 12 0 1214.5527 P56182 P56182 404 415 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.0040776 66.435 By MS/MS 1 1.1477 1.1504 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1477 1.1504 NaN 1 1 Median NaN NaN NaN 0 0 Median 4278800 1927300 2351500 0 0 0 0 0 0 0 0 0 0 0 0 4278800 1927300 2351500 0 0 0 670 2507 696 3257 3307 3307 1 AEAGGGWEGSASYK KQPVFGANYIKGTVKAEAGGGWEGSASYKL KAEAGGGWEGSASYKLTFTAGGAIEFGQRM K A E Y K L 3 0 0 0 0 0 2 4 0 0 0 1 0 0 0 2 0 1 1 0 0 0 14 0 1368.5946 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9;K7EIN1;K7ESN4 K7EIJ0 76 89 WBP2 WW domain-binding protein 2 yes no 2 3.4701E-10 121.08 By MS/MS By MS/MS 1 3 1.2119 1.1266 17.928 3 Median 1.2119 1.1266 NaN 1 0 Median 1.4525 1.2346 24.226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20941000 8366000 12575000 10124000 4544700 5579300 10817000 3821400 6995400 0 0 0 0 0 0 0 0 0 0 0 0 671 512 697 3258;3259;3260;3261 3308;3309;3310;3311;3312;3313;3314;3315 3315 8 AEAGLGALPR ______________________________ ASRLRAEAGLGALPRRALAQYLLFLRLYPV R A E P R R 3 1 0 0 0 0 1 2 0 0 2 0 0 0 1 0 0 0 0 0 0 0 10 0 953.52943 F5H4N4;Q9NR77 F5H4N4 10 19 PXMP2 Peroxisomal membrane protein 2 yes no 2 0.0026267 73.248 By MS/MS 1 1.4041 1.1655 NaN 1 Median NaN NaN NaN 0 0 Median 1.4041 1.1655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2150800 780430 1370400 0 0 0 2150800 780430 1370400 0 0 0 0 0 0 0 0 0 0 0 0 672 1032 698 3262 3316 3316 1 AEAGPEGVAPAPEGEK AKENGTDTVQKPSEKAEAGPEGVAPAPEGE EAGPEGVAPAPEGEKKQKPARKRRMVEEIG K A E E K K 4 0 0 0 0 0 4 3 0 0 0 1 0 0 3 0 0 0 0 1 0 0 16 0 1507.7155 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 608 623 HYOU1 Hypoxia up-regulated protein 1 yes no 2 1.1596E-06 91.914 By MS/MS 1 0.69725 0.59119 NaN 1 Median NaN NaN NaN 0 0 Median 0.69725 0.59119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7986900 4611500 3375400 0 0 0 7986900 4611500 3375400 0 0 0 0 0 0 0 0 0 0 0 0 673 101 699 3263 3317;3318 3318 2 AEAGPEGVAPAPEGEKK AKENGTDTVQKPSEKAEAGPEGVAPAPEGE AGPEGVAPAPEGEKKQKPARKRRMVEEIGV K A E K K Q 4 0 0 0 0 0 4 3 0 0 0 2 0 0 3 0 0 0 0 1 0 0 17 1 1635.8104 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 608 624 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 3.6559E-05 48.547 By MS/MS By MS/MS 1 2 0.84856 0.79463 31.39 3 Median 1.0517 1.1154 NaN 1 0 Median 0.73638 0.68805 20.367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6409200 3484000 2925200 910960 338280 572680 5498300 3145700 2352600 0 0 0 0 0 0 0 0 0 0 0 0 674 101 700 3264;3265;3266 3319;3320;3321;3322 3320 4 AEAGVPAEFSIWTR GGAHKVRAGGPGLERAEAGVPAEFSIWTRE RAEAGVPAEFSIWTREAGAGGLAIAVEGPS R A E T R E 3 1 0 0 0 0 2 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 14 0 1532.7623 P21333;H0Y5C6;Q60FE5 P21333 2251 2264 FLNA Filamin-A no no 2;3 8.6828E-08 135.99 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 4 4 4 1 0.86735 0.84037 19.527 20 Median 0.98421 0.95767 13.845 7 0 Median 0.81347 0.68322 19.151 4 0 Median 0.89514 0.94905 12.031 4 0 Median 0.85293 0.74621 20.993 4 0 Median NaN NaN NaN 0 0 Median 0.73864 0.60544 NaN 1 0 Median 243600000 122230000 121360000 185050000 91280000 93774000 32904000 17390000 15514000 22609000 11951000 10658000 2857400 1530000 1327300 0 0 0 174110 83336 90772 675 2088;3120 701 3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286 3323;3324;3325;3326;3327;3328;3329;3330;3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343 3337 21 AEALASAIASTK MAVQRCVVRIRSDLKAEALASAIASTKVMK DLKAEALASAIASTKVMKAQQVVKSESGEE K A E T K V 5 0 0 0 0 0 1 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 12 0 1131.6136 Q9NVT9 Q9NVT9 193 204 ARMC1 Armadillo repeat-containing protein 1 yes yes 2 0.0012378 55.401 By MS/MS 1 1.1017 0.92651 NaN 1 Median NaN NaN NaN 0 0 Median 1.1017 0.92651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8447400 3119500 5327800 0 0 0 8447400 3119500 5327800 0 0 0 0 0 0 0 0 0 0 0 0 676 4140 702 3287 3344 3344 1 AEALEDLVGFK NLPGSKRQPQTPKEKAEALEDLVGFKELFQ PKEKAEALEDLVGFKELFQTPGHTEESMTD K A E F K E 2 0 0 1 0 0 2 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1190.6183 P46013 P46013 2431 2441 MKI67 Antigen KI-67 yes yes 2 0.00018859 94.692 By matching By MS/MS By matching By matching By matching 1 2 2 1 1 1.1034 1.1812 21.463 7 Median NaN NaN NaN 0 0 Median 1.5079 1.2851 NaN 1 0 Median 1.1114 1.2136 3.8302 2 0 Median 1.0607 0.94828 3.889 2 0 Median 1.2046 1.2725 NaN 1 0 Median 0.83119 0.72737 NaN 1 0 Median 25423000 11005000 14419000 0 0 0 12211000 4886000 7324700 11024000 5127900 5895800 439730 206980 232750 1653400 735040 918360 95688 48650 47038 677 2335 703 3288;3289;3290;3291;3292;3293;3294 3345;3346;3347;3348 3346 4 AEAMDLGKDPNGPTHSSTLFVR ______________________________ KDPNGPTHSSTLFVRDDGSSMSFYVRPSPA M A E V R D 2 1 1 2 0 0 1 2 1 0 2 1 1 1 2 2 2 0 0 1 0 0 22 1 2342.1325 Q9NYB0;A0A590UJT3 Q9NYB0 2 23 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 3 1.6162E-25 95.957 By MS/MS By matching 2 1 0.54919 0.61576 40.644 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40399 0.45232 43.623 2 1 Median 0.76235 0.71537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16477000 11292000 5185300 0 0 0 0 0 0 15107000 10484000 4623100 1370300 808060 562250 0 0 0 0 0 0 678 4174 704;705 3295;3296;3297 3349;3350 3350 1892 2 AEAQQVEALPGPSLDQWHR KKKKRKKLKKKGKEKAEAQQVEALPGPSLD QVEALPGPSLDQWHRSAGEEEDGPVLTDEQ K A E H R S 3 1 0 1 0 3 2 1 1 0 2 0 0 0 2 1 0 1 0 1 0 0 19 0 2131.0447 F5GYV5;H7BZV4;A0A0C4DG62;F8WCT1;Q66PJ3;F5H7X4 F5GYV5 121 139 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 3 0.00061099 30.767 By MS/MS By matching 1 1 0.89712 0.8658 2.0436 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92367 0.8784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87134 0.85338 NaN 1 0 Median NaN NaN NaN 0 0 Median 4696000 2330600 2365500 0 0 0 0 0 0 3121700 1555000 1566700 0 0 0 1574300 775550 798740 0 0 0 679 235 706 3298;3299 3351 3351 1 AEASIQAGAGDGEWEESEVK ELVGREMGVDVHFPKAEASIQAGAGDGEWE QAGAGDGEWEESEVKLKKSKIKMPKFNFSK K A E V K L 4 0 0 1 0 1 5 3 0 1 0 1 0 0 0 2 0 1 0 1 0 0 20 0 2061.9127 Q09666 Q09666 5687 5706 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.5127E-19 136.17 By MS/MS By MS/MS 1 3 1.2887 1.1342 14.609 4 Median 1.2923 1.2948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2931 1.0996 12.799 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15608000 6380100 9228200 11904000 4849600 7054600 0 0 0 0 0 0 3704100 1530500 2173600 0 0 0 0 0 0 680 2749 707 3300;3301;3302;3303 3352;3353;3354;3355;3356 3353 5 AEASSGDHPTDTEMKEEQK ANMFERLAEEENKAKAEASSGDHPTDTEMK SGDHPTDTEMKEEQKSNTAGSQSQVETEA_ K A E Q K S 2 0 0 2 0 1 4 1 1 0 0 2 1 0 1 2 2 0 0 0 0 0 19 1 2088.8906 Q02790 Q02790 427 445 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3;4 0.000865 28.083 By matching By MS/MS By matching By matching 3 2 2 2 0.85018 0.81708 24.635 9 Median 0.85018 0.81508 2.1351 3 0 Median 0.83247 0.78214 6.1804 2 0 Median 0.88524 0.93636 7.917 2 0 Median 0.60459 0.60433 52.176 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17834000 9248800 8585500 9050400 4667500 4382900 7217300 3731000 3486300 902120 472840 429280 664420 377510 286910 0 0 0 0 0 0 681 2701 708 3304;3305;3306;3307;3308;3309;3310;3311;3312 3357;3358 3358 2 AEAVESAQAGDK LPRGSIPRSLEVILRAEAVESAQAGDKCDF ILRAEAVESAQAGDKCDFTGTLIVVPDVSK R A E D K C 4 0 0 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1174.5466 Q14566 Q14566 230 241 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0014945 52.278 By MS/MS By matching By matching 1 1 1 1.1667 1.0525 14.314 3 Plateau NaN NaN NaN 0 0 Median 1.1667 1.0525 NaN 1 0 Median 0.75208 0.79371 NaN 1 0 Median 1.0818 0.95302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 673260 333290 339970 0 0 0 450550 219680 230870 110400 57560 52841 112310 56051 56257 0 0 0 0 0 0 682 2881 709 3313;3314;3315 3359;3360 3359 2 AEAVVNTVDISER KKRRMLKRLEQTRKKAEAVVNTVDISEREK KKAEAVVNTVDISEREKVAQLRSLYKKAGL K A E E R E 2 1 1 1 0 0 2 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 13 0 1401.71 Q8IY81 Q8IY81 764 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.0036972 43.308 By MS/MS 1 1.2828 1.0359 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2828 1.0359 NaN 1 0 Median 3201300 1529200 1672200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3201300 1529200 1672200 683 3338 710 3316 3361 3361 1 AECSIHLEVIVDR FVNSRIDREELCRRRAECSIHLEVIVDRPL RRAECSIHLEVIVDRPLQVFHVEVAVKDIN R A E D R P 1 1 0 1 1 0 2 0 1 2 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1539.7715 Q9Y5H7 Q9Y5H7 99 111 PCDHA5 Protocadherin alpha-5 yes yes 3 0.0012425 40.113 By MS/MS 1 0.79356 0.79411 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79356 0.79411 NaN 1 0 Median NaN NaN NaN 0 0 Median 36263000 17885000 18378000 0 0 0 0 0 0 0 0 0 0 0 0 36263000 17885000 18378000 0 0 0 684 4457 711 3317 3362 3362 1 AEDAVEAIR ECDIVKDYAFVHMERAEDAVEAIRGLDNTE FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ R A E I R G 3 1 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 9 0 972.48762 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 121 129 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0008527 94.302 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 1 1 1 0.96827 0.85652 46.026 13 Median 0.83992 0.82961 4.1069 2 0 Median 1.282 1.0787 29.621 3 0 Median 0.96827 1.0532 75.328 5 0 Median 0.99273 0.85652 NaN 1 0 Median 0.96989 0.98664 NaN 1 0 Median 0.88117 0.72272 NaN 1 0 Median 45065000 22159000 22906000 6911500 3618700 3292800 6868800 3225000 3643900 15443000 7414700 8028800 3061000 1365600 1695300 9499400 4637000 4862400 3280900 1898100 1382800 685 3870;3780 712 3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330 3363;3364;3365;3366;3367;3368;3369;3370;3371 3364 9 AEDDAYTTFISETGK RVVRKSWMPKVKVLKAEDDAYTTFISETGK AEDDAYTTFISETGKIEPDMMGVEHGFETA K A E G K I 2 0 0 2 0 0 2 1 0 1 0 1 0 1 0 1 3 0 1 0 0 0 15 0 1646.7312 Q96RE7;K7ELC5 Q96RE7 484 498 NACC1 Nucleus accumbens-associated protein 1 yes no 2 0.00014896 77.593 By MS/MS By matching 3 1 1.2572 1.1283 37.971 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1596 1.09 46.35 3 0 Median 1.3629 1.168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13285000 4966700 8318600 0 0 0 0 0 0 12987000 4844200 8142600 298630 122540 176090 0 0 0 0 0 0 686 3725 713 3331;3332;3333;3334 3372 3372 1 AEDGATPSPSNETPK EGEAASAASSTSSPKAEDGATPSPSNETPK AEDGATPSPSNETPKKKKKRFSFKKSFKLS K A E P K K 2 0 1 1 0 0 2 1 0 0 0 1 0 0 3 2 2 0 0 0 0 0 15 0 1499.674 P29966 P29966 138 152 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 2 0.00081026 45.879 By MS/MS By MS/MS 1 1 0.68779 0.62827 0.58511 2 Median 0.64666 0.62567 NaN 1 0 Median 0.73154 0.63087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4184800 2256700 1928200 1617200 902680 714480 2567700 1354000 1213700 0 0 0 0 0 0 0 0 0 0 0 0 687 2175 714 3335;3336 3373;3374;3375;3376 3376 4 AEDGENYDIKK EKEAKQQEEKIEKMRAEDGENYDIKKQAEI EKMRAEDGENYDIKKQAEILQESRMMIPDC R A E K K Q 1 0 1 2 0 0 2 1 0 1 0 2 0 0 0 0 0 0 1 0 0 0 11 1 1280.5885 E5RIW3;E5RJD8;O75347;E5RHG6;E5RIX8;A0A494C144 E5RIW3 18 28 TBCA Tubulin-specific chaperone A yes no 2;3 0.015694 38.293 By matching By MS/MS 2 2 1.1339 1.0351 7.1829 4 Median 1.1339 1.0618 5.9241 2 0 Median 1.1431 0.991 8.4855 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3577400 1611900 1965600 1645100 803850 841210 1932400 808010 1124400 0 0 0 0 0 0 0 0 0 0 0 0 688 852 715 3337;3338;3339;3340 3377;3378 3378 2 AEDGSVIDYELIDQDAR GDFRKLMVALAKGRRAEDGSVIDYELIDQD DGSVIDYELIDQDARDLYDAGVKRKGTDVP R A E A R D 2 1 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 17 0 1907.8749 P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 180 196 ANXA2 Annexin A2;Annexin yes no 2;3 2.8895E-52 227.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 4 5 1 1 1.0895 1.0359 10.648 20 Median 1.0537 1.0216 7.0687 4 0 Median 1.1123 0.96118 13.46 5 0 Median 1.0596 1.0115 8.2499 4 0 Median 1.2226 1.0864 6.9186 5 0 Median 1.093 1.1733 NaN 1 1 Median 0.9099 0.80213 NaN 1 0 Median 161910000 73550000 88360000 48829000 22518000 26311000 7728200 3497100 4231100 87426000 39768000 47658000 15818000 6810100 9008200 1789100 800090 988970 319350 156850 162500 689 1885 716 3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360 3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395;3396;3397 3386 19 AEDKEWMPVTK RGRGRGRGRGARGGKAEDKEWMPVTKLGRL RGGKAEDKEWMPVTKLGRLVKDMKIKSLEE K A E T K L 1 0 0 1 0 0 2 0 0 0 0 2 1 0 1 0 1 1 0 1 0 0 11 1 1332.6384 P15880;E9PQD7;E9PMM9;E9PPT0 P15880 55 65 RPS2 40S ribosomal protein S2 yes no 2;3 4.3579E-05 112.13 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 2 1 2 1.1338 1.0048 22.159 11 Median 0.99728 0.96701 25.594 2 1 Median 1.0769 0.96905 8.8998 4 0 Median 1.316 1.3765 13.622 2 2 Median 1.6529 1.4514 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0415 0.89305 16.68 2 0 Median 160860000 75527000 85332000 41954000 20596000 21358000 88383000 42552000 45830000 13878000 5728200 8149500 4371600 1522800 2848700 0 0 0 12273000 5127300 7145400 690 2020 717;718 3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371 3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410 3404 805 13 AEDKPSTDLSAPVNGEATSQK LAGEELAGEEAPQEKAEDKPSTDLSAPVNG TDLSAPVNGEATSQKGESAEDKEHEEGRDS K A E Q K G 3 0 1 2 0 1 2 1 0 0 1 2 0 0 2 3 2 0 0 1 0 0 21 1 2144.0233 Q7Z4V5;K7EPS6;A0A087WX58 Q7Z4V5 590 610 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 3 0.00011764 35.834 By MS/MS By MS/MS 1 2 0.60929 0.69281 20.784 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60587 0.69281 NaN 1 0 Median 0.73845 0.69255 29.393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7485900 4036200 3449700 0 0 0 0 0 0 4020400 2360000 1660400 3465500 1676200 1789300 0 0 0 0 0 0 691 3248 719 3372;3373;3374 3411;3412 3412 2 AEDLNIAPR PENLSKLKSLLTQLRAEDLNIAPRKATLQP LLTQLRAEDLNIAPRKATLQPLPPNLPPVT R A E P R K 2 1 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 9 0 997.51926 Q96SZ5 Q96SZ5 63 71 ADO 2-aminoethanethiol dioxygenase yes yes 2 0.0043277 77.282 By MS/MS 1 1.2323 1.0277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2323 1.0277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2120300 920270 1200000 0 0 0 0 0 0 0 0 0 2120300 920270 1200000 0 0 0 0 0 0 692 3739 720 3375 3413 3413 1 AEDLPLR SAELAAALLSIYMERAEDLPLRKGTKHLSP LLSIYMERAEDLPLRKGTKHLSPYATLTVG R A E L R K 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 812.43922 Q9BSJ8 Q9BSJ8 807 813 ESYT1 Extended synaptotagmin-1 yes yes 2 0.030618 64.776 By MS/MS 1 0.99746 0.83947 NaN 1 Median NaN NaN NaN 0 0 Median 0.99746 0.83947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6035600 3248300 2787300 0 0 0 6035600 3248300 2787300 0 0 0 0 0 0 0 0 0 0 0 0 693 3816 721 3376 3414 3414 1 AEDLPLRK SAELAAALLSIYMERAEDLPLRKGTKHLSP LSIYMERAEDLPLRKGTKHLSPYATLTVGD R A E R K G 1 1 0 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 1 940.53418 Q9BSJ8 Q9BSJ8 807 814 ESYT1 Extended synaptotagmin-1 yes yes 2 0.026321 47.849 By MS/MS 1 1.2858 1.2117 NaN 1 Median NaN NaN NaN 0 0 Median 1.2858 1.2117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3302800 1516400 1786300 0 0 0 3302800 1516400 1786300 0 0 0 0 0 0 0 0 0 0 0 0 694 3816 722 3377 3415;3416 3415 2 AEDNADTLALVFEAPNQEK KILKCAGNEDIITLRAEDNADTLALVFEAP ADTLALVFEAPNQEKVSDYEMKLMDLDVEQ R A E E K V 4 0 2 2 0 1 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 19 0 2073.9855 P12004 P12004 92 110 PCNA Proliferating cell nuclear antigen yes yes 2;3 1.0722E-84 246.64 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 4 2 2 2 0.93691 0.8457 16.11 15 Median 0.84144 0.80147 8.6852 2 0 Median 1.0621 0.89077 22.965 3 0 Median 0.84943 0.81815 12.75 4 0 Median 0.96419 0.81371 3.6614 2 0 Median 0.93012 0.93952 6.3787 2 0 Median 0.9728 0.80466 31.475 2 0 Median 76884000 39690000 37194000 12070000 6316800 5753200 5973800 2824200 3149500 51901000 27246000 24655000 4283500 2096200 2187300 1695100 839630 855490 960580 367560 593010 695 1974 723 3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392 3417;3418;3419;3420;3421;3422;3423;3424;3425 3420 9 AEDNFEDIITKPPVR DKKIGILHENFQTLKAEDNFEDIITKPPVR AEDNFEDIITKPPVRKFVHEKEIMAEDDQV K A E V R K 1 1 1 2 0 0 2 0 0 2 0 1 0 1 2 0 1 0 0 1 0 0 15 1 1742.8839 Q9Y6G9;E9PHI6 Q9Y6G9 345 359 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 3 0.0091572 35.303 By MS/MS 1 0.77475 0.86984 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77475 0.86984 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13573000 7167800 6405100 0 0 0 0 0 0 13573000 7167800 6405100 0 0 0 0 0 0 0 0 0 696 4491 724 3393 3426 3426 1 AEEASHWLWSR CVVEGRCTRKAECPRAEEASHWLWSRSKSC ECPRAEEASHWLWSRSKSCVAVTSAQPQNM R A E S R S 2 1 0 0 0 0 2 0 1 0 1 0 0 0 0 2 0 2 0 0 0 0 11 0 1370.6367 O15031 O15031 504 514 PLXNB2 Plexin-B2 yes yes 3 0.024553 23.118 By MS/MS By matching 1 1 1.3656 1.2673 45.031 2 Median 0.9422 0.9217 NaN 1 0 Median 1.9793 1.7425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3783300 1978000 1805300 3330700 1866000 1464800 452580 112080 340500 0 0 0 0 0 0 0 0 0 0 0 0 697 1514 725 3394;3395 3427 3427 1 AEEDEILNR DGGTVSQEEEDRKPKAEEDEILNRSPRNRK EDRKPKAEEDEILNRSPRNRKPRRE_____ K A E N R S 1 1 1 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1087.5146 P27824 P27824 574 582 CANX Calnexin yes yes 2 3.7281E-05 153.71 By MS/MS By MS/MS 1 2 1.2169 1.0523 22.922 3 Median 1.0437 0.98669 NaN 1 0 Median 1.4574 1.2604 25.518 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73004000 32639000 40366000 40442000 19460000 20982000 32563000 13179000 19384000 0 0 0 0 0 0 0 0 0 0 0 0 698 2158 726 3396;3397;3398 3428;3429;3430;3431;3432 3429 5 AEEDTQFNYHR ELAQEYDKRKKEMVKAEEDTQFNYHRKKNI EMVKAEEDTQFNYHRKKNIAAERKEAKQEK K A E H R K 1 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.6008 Q14683;G8JLG1;H0Y7K8 Q14683 178 188 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 3.7501E-05 107.47 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1.0493 1.0201 7.6475 7 Median NaN NaN NaN 0 0 Median 1.3835 1.1825 NaN 1 0 Median 0.86345 0.94836 NaN 1 0 Median 1.1623 1.0201 NaN 1 0 Median 0.96753 1.0004 6.7143 3 2 Median 1.244 1.033 NaN 1 0 Median 27259000 13415000 13844000 0 0 0 2825100 1393100 1432000 3221000 1716200 1504800 1954600 889130 1065500 15611000 7620400 7991000 3646500 1796000 1850400 699 2889 727 3399;3400;3401;3402;3403;3404;3405 3433;3434;3435;3436;3437;3438;3439;3440;3441 3435 9 AEEEFNIEK IEQEANEKAEEIDAKAEEEFNIEKGRLVQT EEIDAKAEEEFNIEKGRLVQTQRLKIMEYY K A E E K G 1 0 1 0 0 0 4 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 9 0 1107.5084 P36543;Q96A05 P36543 34 42 ATP6V1E1;ATP6V1E2 V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2 yes no 2 0.010372 48.283 By matching By matching By MS/MS 1 1 1 1.3916 1.1859 46.406 3 Median NaN NaN NaN 0 0 Median 1.2341 1.04 NaN 1 0 Median 2.5646 2.461 NaN 1 0 Median 1.3916 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4758000 1926000 2832100 0 0 0 2283100 1009200 1273800 1535400 518830 1016500 939590 397900 541690 0 0 0 0 0 0 700 2258 728 3406;3407;3408 3442 3442 1 AEEENEFQIPGR LRQMSDLRLQANWNRAEEENEFQIPGRTRP WNRAEEENEFQIPGRTRPSSDQLKEASGTD R A E G R T 1 1 1 0 0 1 4 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 12 0 1417.6474 Q8N0X7 Q8N0X7 342 353 SPG20 Spartin yes yes 2 3.0793E-06 110.14 By MS/MS By matching By matching By matching 1 1 1 1 0.91094 0.78123 4.6142 4 Median 0.75357 0.71755 NaN 1 0 Median 0.89064 0.77994 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93169 0.79487 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95184 0.78252 NaN 1 0 Median 8924200 4606300 4317900 6155000 3280500 2874500 1644700 815040 829660 0 0 0 572940 281840 291100 0 0 0 551580 228880 322700 701 3352 729 3409;3410;3411;3412 3443 3443 1 AEEEVAKLEK ______________________________ ______________________________ M A E E K H 2 0 0 0 0 0 4 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1144.5976 Q9P2R3;I3L3P8 Q9P2R3 2 11 ANKFY1 Rabankyrin-5 yes no 2 0.001914 54.416 By MS/MS 1 1.5268 1.6021 NaN 1 Median 1.5268 1.6021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8374200 2947800 5426400 8374200 2947800 5426400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 702 4229 730 3413 3444;3445 3445 2 AEEEVLDVLR ______________________________ MEGHKAEEEVLDVLRLNVGGCIYTARRESL K A E L R L 1 1 0 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1171.6085 Q6PI47 Q6PI47 6 15 KCTD18 BTB/POZ domain-containing protein KCTD18 yes yes 2 0.0004183 88.948 By MS/MS By matching 1 1 1.2553 1.3174 45.847 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94923 0.95263 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.66 1.8218 NaN 1 0 Median NaN NaN NaN 0 0 Median 5658900 2580100 3078800 0 0 0 0 0 0 4463800 2177600 2286200 0 0 0 1195000 402510 792520 0 0 0 703 3170 731 3414;3415 3446 3446 1 AEEHNIVFMPVIGK ASSVPMNFKDLIETKAEEHNIVFMPVIGKR KAEEHNIVFMPVIGKRHEGKQLYTFGRIVI K A E G K R 1 0 1 0 0 0 2 1 1 2 0 1 1 1 1 0 0 0 0 2 0 0 14 0 1582.8177 Q9UBB9 Q9UBB9 781 794 TFIP11 Tuftelin-interacting protein 11 yes yes 3 0.030087 18.596 By MS/MS By MS/MS 1 1 0.784 0.82144 27.966 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93653 1.0011 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.65632 0.67406 NaN 1 0 Median NaN NaN NaN 0 0 Median 3514600 1939600 1575000 0 0 0 0 0 0 2179200 1126700 1052500 0 0 0 1335400 812910 522520 0 0 0 704 4235 732 3416;3417 3447;3448 3448 2 AEEIANEMIEAAK DFTAKGAMSTQQIKKAEEIANEMIEAAKAV KKAEEIANEMIEAAKAVYTQDCPLAAAKAI K A E A K A 4 0 1 0 0 0 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 13 0 1417.6759 P49588;H3BPK7 P49588 652 664 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.00042442 73.781 By MS/MS By matching 1 2 1.4741 1.4257 31.821 3 Plateau 1.4741 1.4326 NaN 1 0 Median 0.90107 0.84938 14.268 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9321200 3817200 5504000 6896300 2827500 4068800 2424900 989690 1435200 0 0 0 0 0 0 0 0 0 0 0 0 705 2385 733 3418;3419;3420 3449 3449 1 AEEILEK RNEKIAVHCTVRGAKAEEILEKGLKVREYE HCTVRGAKAEEILEKGLKVREYELRKNNFS K A E E K G 1 0 0 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 P62913;Q5VVC8 P62913 79 85 RPL11 60S ribosomal protein L11 yes no 2 0.0038136 102.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0892 0.99706 5.3885 5 Median 1.0856 1.0035 NaN 1 0 Median 1.0802 0.91736 2.8594 2 0 Median 1.0892 1.0213 NaN 1 0 Median 1.2026 0.99706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80171000 36090000 44081000 39488000 17834000 21654000 10100000 4850100 5249600 24487000 10735000 13752000 6096600 2670800 3425800 0 0 0 0 0 0 706 2609 734 3421;3422;3423;3424;3425 3450;3451;3452;3453;3454;3455;3456;3457;3458 3458 9 AEEIWQQSVIGDYLAR GEREERGKLPESPKRAEEIWQQSVIGDYLA EEIWQQSVIGDYLARFKNDRVKALKAMEMT R A E A R F 2 1 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 16 0 1876.9319 P17480;E9PKP7;E9PLT2 P17480 488 503 UBTF Nucleolar transcription factor 1 yes no 2 4.0768E-08 97.214 By MS/MS By MS/MS By matching 2 1 1 0.82664 0.83012 12.787 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82664 0.88469 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65349 0.69152 NaN 1 1 Median 1.0053 0.83012 NaN 1 0 Median 4611000 2374800 2236200 0 0 0 0 0 0 1233400 520150 713300 0 0 0 2980600 1661000 1319600 396920 193700 203220 707 2040 735 3426;3427;3428;3429 3459;3460;3461 3461 3 AEELGLPILGVLR VSDGAAAILLARRSKAEELGLPILGVLRSY SKAEELGLPILGVLRSYAVVGVPPDIMGIG K A E L R S 1 1 0 0 0 0 2 2 0 1 4 0 0 0 1 0 0 0 0 1 0 0 13 0 1378.8184 H7C131;P09110;C9JDE9 H7C131 183 195 ACAA1 3-ketoacyl-CoA thiolase, peroxisomal yes no 2 0.027199 27.115 By MS/MS By matching By matching 1 1 1 0.92387 0.93103 2.6919 3 Median 0.92387 0.94668 NaN 1 0 Median 1.0879 0.93103 NaN 1 0 Median 0.82675 0.89811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4580200 2195300 2384800 646020 291750 354270 1317600 597600 720000 2616500 1306000 1310500 0 0 0 0 0 0 0 0 0 708 1258 736 3430;3431;3432 3462;3463 3462 2 AEELGQELK ASENLRQELTSQAERAEELGQELKAWQEKF TSQAERAEELGQELKAWQEKFFQKEQALST R A E L K A 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1015.5186 A0A087WY61;Q14980 Q14980 1322 1330 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00082669 95.741 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.11 1.0592 23.642 8 Median NaN NaN NaN 0 0 Median 1.4316 1.28 31.582 2 0 Median 1.0944 1.1941 12.141 2 0 Median 1.2619 1.1507 25.013 2 0 Median 0.91402 0.95727 NaN 1 0 Median 0.89328 0.76511 NaN 1 0 Median 74811000 36330000 38481000 0 0 0 16696000 7098100 9597700 19503000 9839500 9663100 14087000 6852900 7233700 17151000 8785900 8365200 7374900 3753300 3621600 709 2905;77 737 3433;3434;3435;3436;3437;3438;3439;3440 3464;3465;3466;3467;3468;3469;3470;3471;3472;3473 3465 10 AEELLAEEK EPTTGNWRGMLKTSKAEELLAEEKSKPIPI MLKTSKAEELLAEEKSKPIPIMPASPQKGH K A E E K S 2 0 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1030.5183 O00429 O00429 598 606 DNM1L Dynamin-1-like protein yes yes 2 0.0057315 56.729 By MS/MS By matching 1 1 0.70006 0.67908 23.547 2 Median NaN NaN NaN 0 0 Median 0.91017 0.80211 NaN 1 0 Median 0.53845 0.57492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4022700 2172500 1850200 0 0 0 2707300 1311400 1395900 1315400 861160 454210 0 0 0 0 0 0 0 0 0 710 1463 738 3441;3442 3474 3474 1 AEENTDQASPQEDYAGFER ILCAIQNLEERKNEKAEENTDQASPQEDYA TDQASPQEDYAGFERLQSGHLTKLLEDDFW K A E E R L 3 1 1 2 0 2 4 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 19 0 2155.893 Q9NU22 Q9NU22 4530 4548 MDN1 Midasin yes yes 2;3 4.7327E-05 39.203 By MS/MS By MS/MS 2 2 0.74392 0.72507 7.6364 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64673 0.70457 0.45423 2 0 Median 0.90291 0.78495 7.6176 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8668200 4785700 3882500 0 0 0 0 0 0 7175600 4033300 3142300 1492600 752410 740240 0 0 0 0 0 0 711 4112 739 3443;3444;3445;3446 3475;3476 3475 2 AEEQPQVELFVK ______________________________ ______________________________ M A E V K A 1 0 0 0 0 2 3 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 12 0 1415.7296 O00299 O00299 2 13 CLIC1 Chloride intracellular channel protein 1 yes yes 2 0.0014122 53.683 By MS/MS By MS/MS By matching 1 2 1 0.9149 0.81149 22.73 4 Median 0.9645 0.90406 NaN 1 0 Median 0.83412 0.70262 5.0972 2 0 Median 1.1654 1.1209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16975000 8574800 8400500 7093400 3550600 3542800 7891500 4248600 3642900 1990400 775610 1214800 0 0 0 0 0 0 0 0 0 712 1456 740 3447;3448;3449;3450 3477;3478;3479 3479 3 AEETSSPVIGELWSPDQTAEASHVSR IREYLKGHYYVPLLRAEETSSPVIGELWSP LWSPDQTAEASHVSRYGGSPRDPVLTLRAF R A E S R Y 3 1 0 1 0 1 4 1 1 1 1 0 0 0 2 5 2 1 0 2 0 0 26 0 2782.3046 Q86XL3 Q86XL3 483 508 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 yes yes 3 0.00010831 35.32 By MS/MS 1 0.59595 0.6367 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59595 0.6367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2001400 1380400 621060 0 0 0 0 0 0 2001400 1380400 621060 0 0 0 0 0 0 0 0 0 713 3301 741 3451 3480 3480 1 AEEVATFFAK VKFYYDGKVMKLSPKAEEVATFFAKMLDHE KLSPKAEEVATFFAKMLDHEYTTKEIFRKN K A E A K M 3 0 0 0 0 0 2 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 10 0 1111.555 P11387 P11387 253 262 TOP1 DNA topoisomerase 1 yes yes 2 0.00040727 101.64 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 3 2 4 1.2772 1.1957 16.894 15 Median 1.2652 1.251 NaN 1 0 Median 1.2673 1.1256 NaN 1 0 Median 1.0531 1.1015 17.972 4 0 Median 1.4213 1.1959 9.7458 3 0 Median 1.1924 1.1798 30.602 2 0 Median 1.4188 1.1914 20.538 4 0 Median 197810000 89419000 108400000 3184800 1450400 1734400 1573200 695960 877200 147930000 69712000 78216000 22497000 9224400 13272000 11487000 3851700 7634800 11145000 4484500 6660500 714 1962 742 3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466 3481;3482;3483;3484;3485;3486;3487;3488 3486 8 AEEVELYLEK YLKSADCYNEIYNFKAEEVELYLEKLKEKR IYNFKAEEVELYLEKLKEKRGLSGKYQTSS K A E E K L 1 0 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 0 1221.6129 Q8NBN3 Q8NBN3 98 107 TMEM87A Transmembrane protein 87A yes yes 2 0.021615 36.693 By matching By MS/MS By matching 1 1 1 1.0964 0.95701 29.565 3 Median 1.1599 1.09 NaN 1 0 Median 1.0964 0.95701 NaN 1 0 Median 0.54918 0.61979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8370000 4097400 4272700 1645800 789320 856500 2774000 1485300 1288700 3950200 1822700 2127500 0 0 0 0 0 0 0 0 0 715 3408 743 3467;3468;3469 3489 3489 1 AEEYEFLTPVEEAPK KIDKTDYMVGSYGPRAEEYEFLTPVEEAPK AEEYEFLTPVEEAPKGSISPSHPRPGFRRE R A E P K G 2 0 0 0 0 0 5 0 0 0 1 1 0 1 2 0 1 0 1 1 0 0 15 0 1750.8301 J3KTF8;J3QQX2;P52565;J3KRE2 J3KTF8 153 167 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2;3 8.9878E-10 110.93 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 2 0.80895 0.723 14.244 15 Median 0.75018 0.69344 16.265 6 2 Median 0.92107 0.77739 5.9303 5 0 Median 0.73143 0.70574 1.2296 2 0 Median 1.0865 0.90349 22.255 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1030700000 577610000 453130000 957260000 538440000 418820000 28141000 14129000 14011000 43625000 24192000 19433000 1716700 851320 865420 0 0 0 0 0 0 716 1336 744 3470;3471;3472;3473;3474;3475;3476;3477;3478;3479;3480;3481;3482;3483;3484 3490;3491;3492;3493;3494;3495;3496;3497;3498;3499;3500;3501;3502;3503;3504;3505;3506;3507;3508 3494 19 AEFAAPSTDAPDK ALVKLGNTTVICGVKAEFAAPSTDAPDKGY VKAEFAAPSTDAPDKGYVVPNVDLPPLCSS K A E D K G 4 0 0 2 0 0 1 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 13 0 1318.6041 Q96B26 Q96B26 64 76 EXOSC8 Exosome complex component RRP43 yes yes 2 0.00019423 81.625 By MS/MS By MS/MS 1 1 1.1346 1.0196 7.6811 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1183 1.0765 NaN 1 0 Median 1.1512 0.96573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22264000 7760600 14503000 0 0 0 0 0 0 13837000 3855700 9980900 8427100 3904900 4522200 0 0 0 0 0 0 717 3604 745 3485;3486 3509;3510;3511;3512 3509 4 AEFEDQDDEAR DDLKGEMQKQAQLNRAEFEDQDDEARVQYE QLNRAEFEDQDDEARVQYEGFRPGMYVRIE R A E A R V 2 1 0 3 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1323.5215 Q14692 Q14692 864 874 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.00017784 99.815 By matching By MS/MS By MS/MS 1 1 1 0.98146 0.97855 11.907 3 Median 0.98146 0.97855 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78237 0.85264 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0241 1.0808 NaN 1 0 Median NaN NaN NaN 0 0 Median 6196600 2737300 3459300 606270 303830 302440 0 0 0 1800900 904210 896700 0 0 0 3789500 1529300 2260200 0 0 0 718 2893 746 3487;3488;3489 3513;3514;3515 3514 3 AEFFADVVPAVR QGHMWRAAFTAGRMKAEFFADVVPAVRKWR RMKAEFFADVVPAVRKWREAGMKVYIYSSG K A E V R K 3 1 0 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 3 0 0 12 0 1319.6874 A0A0C4DGY8;D6RA00;Q9UHY7 A0A0C4DGY8 41 52 ENOPH1 Enolase-phosphatase E1 yes no 2 0.00062698 65.347 By MS/MS 1 0.93232 0.89584 NaN 1 Median 0.93232 0.89584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2916500 1564500 1351900 2916500 1564500 1351900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 719 258 747 3490 3516;3517 3516 2 AEFGDFDIK MLFSSGTVQLTTTSRAEFGDFDIKTVLQEI LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT R A E I K T 1 0 0 2 0 0 1 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 9 0 1040.4815 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 258 266 PHF6 PHD finger protein 6 yes no 2 0.01772 41.448 By MS/MS By matching By matching By matching 3 3 1 1 1.2473 1.153 29.478 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1993 1.1602 3.066 3 0 Median 1.2676 1.1065 13.549 3 0 Median 0.54359 0.52395 NaN 1 0 Median 1.3773 1.1721 NaN 1 0 Median 43648000 20181000 23467000 0 0 0 0 0 0 37419000 17428000 19991000 5032200 2097500 2934700 1074700 604390 470320 122090 51129 70961 720 3327 748 3491;3492;3493;3494;3495;3496;3497;3498 3518;3519;3520 3518 3 AEFGPPGPGAGSR NFRAFELLHLHLDLRAEFGPPGPGAGSRGL LRAEFGPPGPGAGSRGLSGTAVLDLRCLEP R A E S R G 2 1 0 0 0 0 1 4 0 0 0 0 0 1 3 1 0 0 0 0 0 0 13 0 1198.5731 Q9H4A4;A6NKB8;A0A087WU27 Q9H4A4 45 57 RNPEP Aminopeptidase B yes no 2 0.00027635 78.683 By matching By MS/MS 1 1 0.70294 0.64123 20.312 2 Median 0.76942 0.74027 NaN 1 0 Median 0.64222 0.55544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19448000 9604700 9843600 6833400 3911600 2921800 12615000 5693100 6921700 0 0 0 0 0 0 0 0 0 0 0 0 721 3964 749 3499;3500 3521;3522 3521 2 AEFSAGAWSEPR VDEEEGCDQVARDLRAEFSAGAWSEPRKRS DLRAEFSAGAWSEPRKRSVLPPDGNGSPVL R A E P R K 3 1 0 0 0 0 2 1 0 0 0 0 0 1 1 2 0 1 0 0 0 0 12 0 1306.5942 Q8N6S5 Q8N6S5 57 68 ARL6IP6 ADP-ribosylation factor-like protein 6-interacting protein 6 yes yes 2 0.00012009 90.108 By MS/MS By matching 2 1 0.91971 0.88381 114.77 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84688 0.86159 3.6012 2 1 Median 0.14321 0.11809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13782000 8913200 4868400 0 0 0 0 0 0 13213000 8421800 4791600 568240 491390 76853 0 0 0 0 0 0 722 3389 750 3501;3502;3503 3523;3524 3524 2 AEFTSPPSLFK RTGNSEKETALPSTKAEFTSPPSLFKTGLP PSTKAEFTSPPSLFKTGLPPSRNSTSSQSQ K A E F K T 1 0 0 0 0 0 1 0 0 0 1 1 0 2 2 2 1 0 0 0 0 0 11 0 1222.6234 Q6UN15;A0A0B4J203 Q6UN15 255 265 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 0.00065076 65.347 By MS/MS 1 0.69188 0.68385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69188 0.68385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40259000 23138000 17121000 0 0 0 0 0 0 40259000 23138000 17121000 0 0 0 0 0 0 0 0 0 723 3185 751 3504 3525;3526 3526 2 AEFTVETR YGPGIEPTGNMVKKRAEFTVETRSAGQGEV GNMVKKRAEFTVETRSAGQGEVLVYVEDPA R A E T R S 1 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 8 0 951.46616 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 302 309 FLNA Filamin-A no no 2 0.0024637 121.62 By MS/MS By MS/MS By matching By matching 2 4 1 1 1.0349 0.87747 56.748 8 Median 1.152 1.1262 3.9412 2 1 Median 0.99557 0.8213 15.301 4 1 Median NaN NaN NaN 0 0 Median 0.91217 0.79383 NaN 1 0 Median 3.3687 3.9603 NaN 1 0 Median NaN NaN NaN 0 0 Median 108470000 51697000 56776000 9708700 4184400 5524200 93245000 46101000 47144000 0 0 0 1209900 618000 591920 4309400 793330 3516100 0 0 0 724 2088;3120 752 3505;3506;3507;3508;3509;3510;3511;3512 3527;3528;3529;3530;3531;3532 3529 6 AEFVEVTK LKAWSVARLSQKFPKAEFVEVTKLVTDLTK LSQKFPKAEFVEVTKLVTDLTKVHKECCHG K A E T K L 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 921.48075 CON__P02769 CON__P02769 249 256 yes yes 2 0.0057466 84.498 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 3 1 0.084062 0.076067 104.27 14 Median 0.06837 0.065273 84.83 4 4 Median 0.056312 0.047686 102.78 4 4 Median 0.039052 0.038328 44.276 2 2 Median 0.29297 0.24167 52.561 3 3 Median 0.28694 0.28599 NaN 1 1 Median NaN NaN NaN 0 0 Median 310550000 300900000 9646400 27138000 25453000 1684900 250370000 245840000 4531000 22154000 20935000 1218900 5640200 4662400 977780 5244300 4010500 1233800 0 0 0 + 725 746 753 3513;3514;3515;3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526 3533;3534;3535;3536;3537;3538;3539;3540;3541;3542;3543;3544;3545;3546;3547 3541 15 AEFYHQPWSQEAVSR KVMTDVAGNPEEERRAEFYHQPWSQEAVSR AEFYHQPWSQEAVSRYFYCKIQQRRQELEQ R A E S R Y 2 1 0 0 0 2 2 0 1 0 0 0 0 1 1 2 0 1 1 1 0 0 15 0 1833.8434 Q6STE5 Q6STE5 447 461 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 3 0.00049402 38.613 By MS/MS By MS/MS 1 1 1.0348 0.97188 28.31 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77819 0.79557 NaN 1 0 Median 1.3761 1.1873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7710600 4333800 3376800 0 0 0 0 0 0 6343200 3638700 2704500 1367400 695100 672340 0 0 0 0 0 0 726 3183 754 3527;3528 3548;3549 3548 2 AEGAATEEEGTPK GYNVNDEKAKEKDKKAEGAATEEEGTPKES KKAEGAATEEEGTPKESEPQAAAEPAEAKE K A E P K E 3 0 0 0 0 0 4 2 0 0 0 1 0 0 1 0 2 0 0 0 0 0 13 0 1288.5783 P80723;U3KQP0 P80723 26 38 BASP1 Brain acid soluble protein 1 yes no 2 0.010536 35.944 By matching By matching By MS/MS 1 1 1 0.70976 0.70713 2.5673 3 Median 0.72016 0.70958 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70976 0.70713 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70265 0.67761 NaN 1 0 Median NaN NaN NaN 0 0 Median 1492900 879860 613020 334760 193230 141530 0 0 0 202440 117480 84966 0 0 0 955680 569150 386530 0 0 0 727 2649 755 3529;3530;3531 3550 3550 1 AEGAIAGFR RRGVVGPELYGRLKRAEGAIAGFRDPFSGK YGRLKRAEGAIAGFRDPFSGKQVSVFQAMK R A E F R D 3 1 0 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 9 0 890.46102 P58107;A0A075B730 P58107 1004 1012 EPPK1 Epiplakin yes no 2 0.00081314 96.492 By MS/MS 2 1.3145 1.0847 11.008 2 Median NaN NaN NaN 0 0 Median 1.3145 1.0847 11.008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10771000 5300000 5471500 0 0 0 10771000 5300000 5471500 0 0 0 0 0 0 0 0 0 0 0 0 728 2520 756 3532;3533 3551;3552 3551 2 AEGAIAGFRDPFSGK RRGVVGPELYGRLKRAEGAIAGFRDPFSGK AEGAIAGFRDPFSGKQVSVFQAMKKGLIPW R A E G K Q 3 1 0 1 0 0 1 3 0 1 0 1 0 2 1 1 0 0 0 0 0 0 15 1 1521.7576 P58107;A0A075B730 P58107 1004 1018 EPPK1 Epiplakin yes no 3 0.0008579 37.77 By MS/MS 1 0.65351 0.67407 NaN 1 Median 0.65351 0.67407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6016400 3683000 2333400 6016400 3683000 2333400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 729 2520 757 3534 3553 3553 1 AEGDVAALNR GLQRELDGERERREKAEGDVAALNRRIQLV ERREKAEGDVAALNRRIQLVEEELDRAQER K A E N R R 3 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1014.5094 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90 P67936 45 54 TPM4 Tropomyosin alpha-4 chain yes no 2 0.0028319 71.501 By MS/MS 2 1.1812 1.1407 35.687 2 Median 1.1812 1.1407 35.687 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3587400 1160300 2427100 3587400 1160300 2427100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 730 2629 758 3535;3536 3554;3555 3555 2 AEGFVDALHR MAELVQGQSAPVGMKAEGFVDALHRVRQIA PVGMKAEGFVDALHRVRQIAAKIDSIPHLN K A E H R V 2 1 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1113.5567 Q96I24;A0A494C1K6 Q96I24 16 25 FUBP3 Far upstream element-binding protein 3 yes no 2 0.00070231 109.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1.2328 1.2289 21.901 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3333 1.3293 NaN 1 0 Median 1.864 1.5668 NaN 1 0 Median 1.011 1.0325 13.518 2 0 Median NaN NaN NaN 0 0 Median 45109000 18979000 26129000 0 0 0 0 0 0 15252000 5714200 9538200 11856000 4928200 6927800 18000000 8337100 9663100 0 0 0 731 3673 759 3537;3538;3539;3540;3541;3542 3556;3557;3558;3559;3560 3558 5 AEGGGATTSTQVMVIK KLLVKMPFQTSPGGKAEGGGATTSTQVMVI EGGGATTSTQVMVIKRPGRKRKAEADPQAI K A E I K R 2 0 0 0 0 1 1 3 0 1 0 1 1 0 0 1 3 0 0 2 0 0 16 0 1548.7818 P51608;A0A087X1U4;I6LM39 P51608 234 249 MECP2 Methyl-CpG-binding protein 2 yes no 2 4.0391E-05 80.979 By MS/MS By MS/MS By matching 1 2 1 0.99792 1.0047 9.8897 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93955 0.95945 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98376 0.97135 15.48 2 0 Median 1.2701 1.052 NaN 1 0 Median 29326000 13238000 16088000 0 0 0 0 0 0 9485700 4288800 5196900 0 0 0 18586000 8363700 10222000 1254100 585050 669060 732 2437 760 3543;3544;3545;3546 3561;3562;3563;3564;3565 3562 5 AEGGYFGQIR TMEQLEAMTGGEQLKAEGGYFGQIRNTKKS GEQLKAEGGYFGQIRNTKKSSQRLKDALLD K A E I R N 1 1 0 0 0 1 1 3 0 1 0 0 0 1 0 0 0 0 1 0 0 0 10 0 1096.5302 Q8NI27;A0A0C4DG98 Q8NI27 711 720 THOC2 THO complex subunit 2 yes no 2 0.00047247 109.01 By matching By MS/MS By MS/MS 3 4 3 0.89214 0.93615 34.659 9 Median NaN NaN NaN 0 0 Median 0.97733 0.93615 23.523 3 0 Plateau 0.89214 0.97245 50.802 3 2 Median 0.98935 0.87066 37.045 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81321000 50592000 30729000 0 0 0 3840300 1897000 1943300 70533000 45172000 25361000 6948000 3523000 3425000 0 0 0 0 0 0 733 3448 761 3547;3548;3549;3550;3551;3552;3553;3554;3555;3556 3566;3567;3568;3569;3570;3571 3570 6 AEGLGDGYR QLLGHLLLVAKQTAKAEGLGDGYRLVINDG AKQTAKAEGLGDGYRLVINDGKLGAQSVYH K A E Y R L 1 1 0 1 0 0 1 3 0 0 1 0 0 0 0 0 0 0 1 0 0 0 9 0 936.43011 Q9BX68 Q9BX68 124 132 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 2 0.013814 45.081 By MS/MS 1 0.82476 0.82358 NaN 1 Median 0.82476 0.82358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1711400 923430 788020 1711400 923430 788020 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 734 3877 762 3557 3572 3572 1 AEGPDVAVDLPK MPKMKMPKFSVSGLKAEGPDVAVDLPKGDI GLKAEGPDVAVDLPKGDINIEGPSMNIEGP K A E P K G 2 0 0 2 0 0 1 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1209.6241 Q09666 Q09666 3489 3500 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00029009 83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 0.83562 0.83602 17.648 7 Median 0.8732 0.87537 NaN 1 0 Median 0.88959 0.79061 NaN 1 0 Median 0.81981 0.87388 NaN 1 0 Median 0.8184 0.77864 10.056 2 0 Median NaN NaN NaN 0 0 Median 0.96871 0.8258 40.205 2 0 Median 74406000 37754000 36652000 13574000 6838300 6735700 13705000 7054500 6650000 29600000 15128000 14471000 16613000 8270000 8342600 0 0 0 914850 462810 452040 735 2749 763 3558;3559;3560;3561;3562;3563;3564 3573;3574;3575;3576;3577;3578;3579;3580;3581;3582;3583 3574 11 AEGPEVDVNLPK MPKMKMPKFSVPGFKAEGPEVDVNLPKADV GFKAEGPEVDVNLPKADVDISGPKIDVTAP K A E P K A 1 0 1 1 0 0 2 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1266.6456 Q09666 Q09666 764 775 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 6 1 1 0.80622 0.75824 8.9007 16 Median 0.81329 0.78064 3.4948 3 1 Median 0.84353 0.75229 8.2784 4 2 Median 0.74526 0.78875 NaN 1 0 Median 0.76627 0.72088 12.57 6 1 Median 0.72863 0.76355 NaN 1 0 Median 0.81185 0.69539 NaN 1 0 Median 1045300000 563230000 482040000 261290000 147160000 114130000 275120000 142640000 132480000 288340000 152940000 135410000 185050000 101230000 83822000 28718000 15723000 12995000 6746600 3550500 3196100 736 2749 764 3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576;3577;3578;3579;3580 3584;3585;3586;3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614 3609 31 AEGSDVANAVLDGADCIMLSGETAK TQMLESMIKKPRPTRAEGSDVANAVLDGAD LDGADCIMLSGETAKGDYPLEAVRMQHLIA R A E A K G 5 0 1 3 1 0 2 3 0 1 2 1 1 0 0 2 1 0 0 2 0 0 25 0 2493.1363 H3BTN5;P14618;B4DNK4 P14618 343 367 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3 5.0134E-05 29.269 By MS/MS By MS/MS 1 3 1.0906 0.94993 7.5342 4 Median 1.1037 1.0683 NaN 1 0 Median 1.0777 0.93471 3.8033 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9778000 4752900 5025100 1464000 603730 860230 8314000 4149200 4164900 0 0 0 0 0 0 0 0 0 0 0 0 737 2005;1237 765 3581;3582;3583;3584 3615;3616;3617;3618 3617 4 AEGTTYRDELLTK NLMEIVKKLMTHVDKAEGTTYRDELLTKII DKAEGTTYRDELLTKIIDICSQSNYQYITN K A E T K I 1 1 0 1 0 0 2 1 0 0 2 1 0 0 0 0 3 0 1 0 0 0 13 1 1495.7518 O14617;A0A2R8Y611;A0A2R8Y4J3 O14617 387 399 AP3D1 AP-3 complex subunit delta-1 yes no 2;3 0.0060655 56.359 By MS/MS 2 0.83414 0.77567 14.841 2 Median NaN NaN NaN 0 0 Median 0.83414 0.77567 14.841 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20143000 10591000 9552100 0 0 0 20143000 10591000 9552100 0 0 0 0 0 0 0 0 0 0 0 0 738 1485 766 3585;3586 3619;3620 3620 2 AEGYAEGDLTLYHR QAKTVTELVTKKKPKAEGYAEGDLTLYHRT KAEGYAEGDLTLYHRTSVTDFLRAANPVDF K A E H R T 2 1 0 1 0 0 2 2 1 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1593.7423 Q8IY81 Q8IY81 238 251 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2;3 3.4358E-34 166.97 By matching By matching By MS/MS By MS/MS 1 1 5 2 1.0216 1.0311 11.71 9 Median 1.1864 1.1609 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91698 0.98353 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0216 1.0311 8.401 5 1 Median 1.1687 0.94941 22.156 2 0 Median 78147000 38256000 39891000 2691700 1484400 1207300 0 0 0 3586600 1866500 1720200 0 0 0 69435000 33864000 35571000 2433900 1041500 1392500 739 3338 767 3587;3588;3589;3590;3591;3592;3593;3594;3595 3621;3622;3623;3624;3625;3626;3627;3628 3625 8 AEGYEVAHGGR EENNLDYIIRSHEVKAEGYEVAHGGRCVTV HEVKAEGYEVAHGGRCVTVFSAPNYCDQMG K A E G R C 2 1 0 0 0 0 2 3 1 0 0 0 0 0 0 0 0 0 1 1 0 0 11 0 1144.5261 P53041;H0YDU8;A8MU39 P53041 431 441 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 2 0.00018718 76.827 By MS/MS By MS/MS By matching 1 1 1 1.0205 1.0143 7.7495 3 Median 1.0205 1.0105 NaN 1 0 Median 1.3274 1.1578 NaN 1 0 Median 1.0126 1.0143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378300 1177700 1200600 1332700 642280 690380 900870 463730 437140 144760 71687 73074 0 0 0 0 0 0 0 0 0 740 1177 768 3596;3597;3598 3629;3630;3631 3630 3 AEHASSLLELASTTK YVNWIKDHLIKQGMKAEHASSLLELASTTK AEHASSLLELASTTKCSSVKYDVEIVEEYF K A E T K C 3 0 0 0 0 0 2 0 1 0 3 1 0 0 0 3 2 0 0 0 0 0 15 0 1556.8046 Q5T4S7 Q5T4S7 1065 1079 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2;3 1.1765E-07 92.265 By MS/MS By matching 3 1 0.84396 0.84602 18.239 3 Plateau 0.73575 0.71628 23.543 2 0 Median 0.92698 0.81494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23970000 12372000 11599000 15694000 8394600 7299700 8276000 3977000 4299100 0 0 0 0 0 0 0 0 0 0 0 0 741 3089 769 3599;3600;3601;3602 3632;3633 3633 2 AEHDQLLLNYAK ARERAKLQIELGKCKAEHDQLLLNYAKKES KCKAEHDQLLLNYAKKESDLNGAQIKLREY K A E A K K 2 0 1 1 0 1 1 0 1 0 3 1 0 0 0 0 0 0 1 0 0 0 12 0 1413.7252 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 112 123 LMNB1 Lamin-B1 yes no 2;3 1.2989E-06 167.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 10 6 0.93881 0.96596 27.006 22 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93881 0.93463 2.1249 2 0 Median 1.469 1.247 38.521 4 1 Median 0.86574 0.85617 16.849 10 1 Median 1.4572 1.2295 19.927 6 0 Median 277400000 135170000 142240000 0 0 0 0 0 0 60536000 32103000 28433000 30750000 11487000 19263000 165210000 84517000 80694000 20906000 7061000 13845000 742 2084 770 3603;3604;3605;3606;3607;3608;3609;3610;3611;3612;3613;3614;3615;3616;3617;3618;3619;3620;3621;3622;3623;3624 3634;3635;3636;3637;3638;3639;3640;3641;3642;3643;3644;3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660 3646 27 AEHDQLLLNYAKK ARERAKLQIELGKCKAEHDQLLLNYAKKES CKAEHDQLLLNYAKKESDLNGAQIKLREYE K A E K K E 2 0 1 1 0 1 1 0 1 0 3 2 0 0 0 0 0 0 1 0 0 0 13 1 1541.8202 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 112 124 LMNB1 Lamin-B1 yes no 3 0.04859 20.236 By MS/MS 2 0.91566 1.0008 12.679 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91566 1.0008 12.679 2 0 Median NaN NaN NaN 0 0 Median 7440600 3759600 3681000 0 0 0 0 0 0 0 0 0 0 0 0 7440600 3759600 3681000 0 0 0 743 2084 771 3625;3626 3661 3661 0 AEHDSILAEK PEYIYTRLEMYNILKAEHDSILAEKAEKDS YNILKAEHDSILAEKAEKDSKPIKVTLPDG K A E E K A 2 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1111.551 P26639;D6RCA5;D6R9F8;D6RDJ6;D6RBR8 P26639 66 75 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 1.6892E-07 166.33 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1.2074 1.0945 30.098 4 Median 1.0965 1.0389 NaN 1 0 Median 1.0588 0.92573 NaN 1 0 Median 1.7297 1.8387 NaN 1 0 Median 1.3295 1.1532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24101000 10126000 13975000 4457000 2021600 2435300 13462000 6311700 7150100 3908300 1132300 2776000 2273800 660080 1613700 0 0 0 0 0 0 744 2147 772 3627;3628;3629;3630;3631;3632 3662;3663;3664;3665;3666;3667 3665 6 AEHLDHVMFR NGLILQYGTAGFRTKAEHLDHVMFRMGLLA GFRTKAEHLDHVMFRMGLLAVLRSKQTKST K A E F R M 1 1 0 1 0 0 1 0 2 0 1 0 1 1 0 0 0 0 0 1 0 0 10 0 1253.5975 H0Y987;O95394;A0A494C0G1;A0A494C163;A0A494C099;D6RCQ8;D6RF77;D6RC77;D6RCD1 H0Y987 32 41 PGM3 Phosphoacetylglucosamine mutase yes no 3 0.001515 50.194 By MS/MS By MS/MS 1 1 1.1507 1.051 6.0451 2 Median 1.0464 1.007 NaN 1 0 Median 1.2655 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9319500 4403100 4916400 6780200 3194700 3585500 2539300 1208400 1330900 0 0 0 0 0 0 0 0 0 0 0 0 745 1165 773 3633;3634 3668;3669 3669 2 AEHQQDSEDLFKK RETAARIQEELSALRAEHQQDSEDLFKKIV LRAEHQQDSEDLFKKIVRASQESEARIQQL R A E K K I 1 0 0 2 0 2 2 0 1 0 1 2 0 1 0 1 0 0 0 0 0 0 13 1 1573.7372 Q9UH99 Q9UH99 364 376 SUN2 SUN domain-containing protein 2 yes yes 3 0.038278 15.798 By MS/MS 1 1.2104 1.3814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2104 1.3814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1925700 926660 999030 0 0 0 0 0 0 1925700 926660 999030 0 0 0 0 0 0 0 0 0 746 4271 774 3635 3670 3670 1 AEIAFEDRK AGAGGLSIAVEGPSKAEIAFEDRKDGSCGV VEGPSKAEIAFEDRKDGSCGVSYVVQEPGD K A E R K D 2 1 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 9 1 1077.5455 Q14315 Q14315 2357 2365 FLNC Filamin-C yes yes 2 0.00243 78.516 By MS/MS 2 0.99213 0.93951 0.72076 2 Median NaN NaN NaN 0 0 Median 0.99213 0.93951 0.72076 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8227600 3726600 4501000 0 0 0 8227600 3726600 4501000 0 0 0 0 0 0 0 0 0 0 0 0 747 2871 775 3636;3637 3671;3672 3672 2 AEIDMLDIR LGTDDNTLIRVMVSRAEIDMLDIRAHFKRL RVMVSRAEIDMLDIRAHFKRLYGKSLYSFI R A E I R A 1 1 0 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1074.5379 P09525;Q6P452 P09525 276 284 ANXA4 Annexin A4;Annexin yes no 2 0.0028118 69.423 By MS/MS By matching By matching 1 1 1 1.2273 1.0361 15.365 3 Median 1.3554 1.3152 NaN 1 0 Median 1.2273 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1741 0.98696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2981900 1150000 1831800 1205600 368140 837510 1703800 745450 958300 0 0 0 72449 36412 36037 0 0 0 0 0 0 748 1917 776 3638;3639;3640 3673 3673 1 AEIGIAMGSGTAVAK AMTGDGVNDAPALKKAEIGIAMGSGTAVAK AEIGIAMGSGTAVAKTASEMVLADDNFSTI K A E A K T 4 0 0 0 0 0 1 3 0 2 0 1 1 0 0 1 1 0 0 1 0 0 15 0 1374.7177 P16615;H7C5W9;O14983;Q93084 P16615 713 727 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 1.3302E-06 95.094 By MS/MS By MS/MS 1 1 1.313 1.2222 29.032 2 Median 1.5423 1.5007 NaN 1 0 Median 1.1179 0.99536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25052000 11157000 13895000 6214700 2479600 3735100 18837000 8677500 10160000 0 0 0 0 0 0 0 0 0 0 0 0 749 2031 777 3641;3642 3674;3675;3676 3675 3 AEIIDQDLYER FSGLRDTVTPGELLKAEIIDQDLYERLEHG ELLKAEIIDQDLYERLEHGQATAKDVGSLA K A E E R L 1 1 0 2 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1363.662 P58107;A0A075B730 P58107 575 585 EPPK1 Epiplakin yes no 2 2.4863E-06 160.59 By MS/MS By MS/MS 2 2 1.3004 1.1767 12.782 4 Median 1.2274 1.1767 4.7785 2 0 Median 1.4888 1.2264 21.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47887000 21150000 26736000 30422000 12989000 17432000 17465000 8161200 9303900 0 0 0 0 0 0 0 0 0 0 0 0 750 2520 778 3643;3644;3645;3646 3677;3678;3679;3680;3681;3682;3683 3678 7 AEIIHHLADLLTDQR RSGGRMLATLEPEQRAEIIHHLADLLTDQR AEIIHHLADLLTDQRDEILLANKKDLEEAE R A E Q R D 2 1 0 2 0 1 1 0 2 2 3 0 0 0 0 0 1 0 0 0 0 0 15 0 1743.9268 P54886 P54886 386 400 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 9.4877E-05 56.599 By MS/MS 1 1.4196 1.2276 NaN 1 Median NaN NaN NaN 0 0 Median 1.4196 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22674000 9223200 13451000 0 0 0 22674000 9223200 13451000 0 0 0 0 0 0 0 0 0 0 0 0 751 2488 779 3647 3684;3685 3685 2 AEIIHHLADLLTDQRDEILLANK RSGGRMLATLEPEQRAEIIHHLADLLTDQR DLLTDQRDEILLANKKDLEEAEGRLAAPLL R A E N K K 3 1 1 3 0 1 2 0 2 3 5 1 0 0 0 0 1 0 0 0 0 0 23 1 2640.4235 P54886 P54886 386 408 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3;4 3.3979E-18 82.586 By MS/MS 2 1.19 1.1791 9.3424 2 Median NaN NaN NaN 0 0 Median 1.19 1.1791 9.3424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30181000 14077000 16104000 0 0 0 30181000 14077000 16104000 0 0 0 0 0 0 0 0 0 0 0 0 752 2488 780 3648;3649 3686;3687;3688;3689;3690;3691 3690 6 AEIIHHLADLLTDQRDEILLANKK RSGGRMLATLEPEQRAEIIHHLADLLTDQR LLTDQRDEILLANKKDLEEAEGRLAAPLLK R A E K K D 3 1 1 3 0 1 2 0 2 3 5 2 0 0 0 0 1 0 0 0 0 0 24 2 2768.5185 P54886 P54886 386 409 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3;4 7.2998E-21 96.718 By MS/MS By MS/MS By matching By MS/MS 3 4 3 1 1.1521 1.2002 18.285 11 Median 0.95144 1.0479 29.39 3 0 Median 1.2436 1.3162 9.7134 4 0 Median 0.92147 1.1331 21.591 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1996 1.1174 NaN 1 0 Median 119610000 52772000 66836000 12343000 5990300 6353100 53690000 22689000 31001000 51367000 23113000 28254000 0 0 0 0 0 0 2206900 979280 1227700 753 2488 781 3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660 3692;3693;3694;3695;3696;3697;3698;3699 3695 8 AEIIQERIEDR ______________________________ ______________________________ M A E D R L 1 2 0 1 0 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 11 1 1370.7154 Q9NYH9 Q9NYH9 2 12 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 3 0.0092924 31.843 By MS/MS 1 0.69939 0.7599 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69939 0.7599 NaN 1 0 Median NaN NaN NaN 0 0 Median 2710000 1513300 1196700 0 0 0 0 0 0 0 0 0 0 0 0 2710000 1513300 1196700 0 0 0 754 4176 782 3661 3700 3700 1 AEIITVSDGR ATLLRALQALQQEHKAEIITVSDGRGVKFF QQEHKAEIITVSDGRGVKFF__________ K A E G R G 1 1 0 1 0 0 1 1 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1059.556 Q9BRG1;K7EKV4 Q9BRG1 162 171 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 2 0.00040727 76.827 By MS/MS By matching By matching 2 1 1 1.209 1.0793 53.375 4 Median NaN NaN NaN 0 0 Median 0.73906 0.71719 76.908 2 0 Median 0.98201 0.94292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7028 1.3392 NaN 1 0 Median 10835000 4740000 6095300 0 0 0 3634800 1718300 1916400 6884100 2924900 3959100 0 0 0 0 0 0 316500 96702 219800 755 3795 783 3662;3663;3664;3665 3701;3702 3701 2 AEIQELAMVPR GDEMNLHLPQSLETRAEIQELAMVPRMIVT LETRAEIQELAMVPRMIVTPQSNRPVMGIV R A E P R M 2 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 11 0 1255.6595 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 513 523 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.00011565 133.57 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 3 0.79025 0.77095 12.865 9 Median 0.92818 0.87368 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67354 0.73886 1.7131 2 0 Median 0.79025 0.6916 NaN 1 0 Median 0.73436 0.75422 3.1034 2 0 Median 1.2032 1.0011 10.417 3 0 Plateau 54343000 26886000 27458000 8436400 2423600 6012800 0 0 0 15056000 8360800 6695600 389750 244030 145720 27106000 14734000 12372000 3355200 1123000 2232200 756 486 784;785 3666;3667;3668;3669;3670;3671;3672;3673;3674 3703;3704;3705;3706;3707;3708 3708 203 5 AEISFEDR AGAGGLAIAVEGPSKAEISFEDRKDGSCGV AVEGPSKAEISFEDRKDGSCGVAYVVQEPG K A E D R K 1 1 0 1 0 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 965.44543 P21333;H0Y5C6;Q60FE5 P21333 2281 2288 FLNA Filamin-A no no 2 3.9795E-13 147.52 By MS/MS 4 1.1909 0.82953 13.419 4 Linear NaN NaN NaN 0 0 Median 1.1909 0.82953 13.419 4 1 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46657000 23251000 23407000 0 0 0 46657000 23251000 23407000 0 0 0 0 0 0 0 0 0 0 0 0 757 2088;3120 786 3675;3676;3677;3678 3709;3710;3711 3709 3 AEISFEDRK AGAGGLAIAVEGPSKAEISFEDRKDGSCGV VEGPSKAEISFEDRKDGSCGVAYVVQEPGD K A E R K D 1 1 0 1 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 9 1 1093.5404 P21333;H0Y5C6;Q60FE5 P21333 2281 2289 FLNA Filamin-A no no 2 0.0010408 101.54 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.91131 0.89388 19.462 7 Median 0.98519 0.99772 1.1871 2 0 Median 0.91131 0.83926 21.778 3 0 Median 0.90452 1.0753 NaN 1 1 Median 0.9083 0.84605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35256000 17917000 17339000 4919900 2293100 2626800 27386000 14098000 13288000 1525600 758640 766940 1424300 766660 657620 0 0 0 0 0 0 758 2088;3120 787 3679;3680;3681;3682;3683;3684;3685 3712;3713;3714;3715;3716;3717;3718;3719 3717 8 AEISNAIDQYVTGTIGEDEDLIK HPQVLSMKFKTGVKRAEISNAIDQYVTGTI QYVTGTIGEDEDLIKWKALFEEVPELLTEA R A E I K W 2 0 1 3 0 1 3 2 0 4 1 1 0 0 0 1 2 0 1 1 0 0 23 0 2493.2122 P31939;H7C1S2 P31939 485 507 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 1.5375E-38 168.41 By MS/MS By MS/MS 1 1 1.0334 0.93871 0.10176 2 Median 0.96935 0.93939 NaN 1 0 Median 1.1017 0.93804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5465600 2693600 2772100 995640 478880 516760 4470000 2214700 2255300 0 0 0 0 0 0 0 0 0 0 0 0 759 2207 788 3686;3687 3720;3721;3722 3722 3 AEITDAEGLGLK PSKPPPVELRAAALRAEITDAEGLGLKLED ALRAEITDAEGLGLKLEDRETVIKELKKSL R A E L K L 2 0 0 1 0 0 2 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1215.6347 E7EX90;Q14203 E7EX90 916 927 DCTN1 Dynactin subunit 1 yes no 2 0.00021084 85.29 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2217 1.053 6.3132 5 Median 1.1616 1.1208 NaN 1 0 Median 1.2217 1.0356 NaN 1 0 Median 0.90562 0.97137 NaN 1 0 Median 1.3509 1.1347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2254 1.053 NaN 1 0 Median 33212000 15140000 18072000 15105000 6529300 8575800 8341800 3608700 4733000 7626200 3946000 3680100 1392400 664360 728080 0 0 0 746110 391590 354520 760 906 789 3688;3689;3690;3691;3692 3723;3724;3725 3723 3 AEITLVATKPEK MKSIPLAMAPVFEQKAEITLVATKPEKLAP EQKAEITLVATKPEKLAPSRQDIFQEQLAA K A E E K L 2 0 0 0 0 0 2 0 0 1 1 2 0 0 1 0 2 0 0 1 0 0 12 1 1298.7446 Q9UBF2 Q9UBF2 591 602 COPG2 Coatomer subunit gamma-2 yes yes 2;3 0.00016578 105.86 By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 1.0533 1.0279 23.342 7 Median 0.78937 0.81394 1.7025 2 0 Median 1.1169 1.0801 7.0094 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0533 1.2362 NaN 1 0 Median 0.94887 0.85216 38.472 2 0 Median 17238000 8620300 8617200 10567000 5498700 5068600 3891900 1748100 2143800 0 0 0 0 0 0 855950 423830 432120 1922400 949730 972670 761 4238 790 3693;3694;3695;3696;3697;3698;3699;3700 3726;3727;3728;3729;3730;3731;3732;3733 3730 7 AEIYEAFENIYPILK IFVSGKVVLTGAKVRAEIYEAFENIYPILK AEIYEAFENIYPILKGFRKTT_________ R A E L K G 2 0 1 0 0 0 3 0 0 3 1 1 0 1 1 0 0 0 2 0 0 0 15 0 1811.9346 Q32MN6;P20226;H0Y6D8 Q32MN6 268 282 TBP TATA-box-binding protein yes no 2 0.023073 26.043 By MS/MS 1 0.7095 0.76269 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7095 0.76269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3554200 2037800 1516400 0 0 0 0 0 0 3554200 2037800 1516400 0 0 0 0 0 0 0 0 0 762 2074 791 3701 3734 3734 1 AEKDEPGAWEETFK ETPRDGDKPEETQGKAEKDEPGAWEETFKT KAEKDEPGAWEETFKTHSDSKPYGPMSVGL K A E F K T 2 0 0 1 0 0 4 1 0 0 0 2 0 1 1 0 1 1 0 0 0 0 14 1 1635.7417 E9PKU7;Q14697;F5H6X6 Q14697 218 231 GANAB Neutral alpha-glucosidase AB no no 2;3 2.5073E-05 94.191 By MS/MS By matching 3 1 0.69119 0.75586 17.496 4 Median 0.74889 0.7829 20.66 3 1 Median NaN NaN NaN 0 0 Median 0.63794 0.72976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48404000 26931000 21473000 45207000 25184000 20024000 0 0 0 3197000 1747600 1449500 0 0 0 0 0 0 0 0 0 763 2896;951 792 3702;3703;3704;3705 3735;3736;3737;3738;3739 3737 5 AEKENPGLTQDIIMK VNLSAAQTLRAAFIKAEKENPGLTQDIIMK AEKENPGLTQDIIMKILEKKSVEVNFTESL K A E M K I 1 0 1 1 0 1 2 1 0 2 1 2 1 0 1 0 1 0 0 0 0 0 15 1 1685.8658 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J932 Q9BUL8 51 65 PDCD10 Programmed cell death protein 10 yes no 2 0.009051 55.261 By MS/MS 1 0.74747 0.75961 NaN 1 Median 0.74747 0.75961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13950000 7777900 6172500 13950000 7777900 6172500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 764 3841 793 3706 3740 3740 1 AELAASLGLTQTQVK NHRFQQTQYLALPERAELAASLGLTQTQVK AELAASLGLTQTQVKIWFQNKRSKFKKLLK R A E V K I 3 0 0 0 0 2 1 1 0 0 3 1 0 0 0 1 2 0 0 1 0 0 15 0 1528.8461 G3V471;P56179;F8VXJ2;P56177 G3V471 70 84 DLX6;DLX1 Homeobox protein DLX-6;Homeobox protein DLX-1 no no 2 0.057977 22.329 By MS/MS By matching By matching 1 1 1 0.78966 0.81132 16.368 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72808 0.75909 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78966 0.81132 NaN 1 0 Median 1.2349 1.0359 NaN 1 0 Median 9169000 5042500 4126500 0 0 0 0 0 0 7646700 4298900 3347800 0 0 0 777490 404410 373080 744780 339200 405590 765 1113 794 3707;3708;3709 3741 3741 1 AELAELPLR KIFSFAHQTISALIKAELAELPLRLFLQGA ISALIKAELAELPLRLFLQGALAAGEIGFE K A E L R L 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1010.576 Q96QK1 Q96QK1 574 582 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.00060862 109.86 By MS/MS By matching By MS/MS 1 1 1 0.92318 0.87333 4.3703 3 Median 0.92318 0.87333 NaN 1 0 Median 0.97109 0.86184 NaN 1 0 Median 0.88828 0.93497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19571000 10291000 9279600 14912000 7845600 7066500 446460 174490 271980 4212100 2271100 1941000 0 0 0 0 0 0 0 0 0 766 3722 795 3710;3711;3712 3742;3743;3744;3745 3743 4 AELANIER QELDGSLKKIIQQQKAELANIERECLNNKQ KIIQQQKAELANIERECLNNKQQLMRAREA K A E E R E 2 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 914.48214 Q9H2G2 Q9H2G2 984 991 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.0088504 61.962 By MS/MS 1 1.3772 1.1689 NaN 1 Median NaN NaN NaN 0 0 Median 1.3772 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3159300 1228800 1930500 0 0 0 3159300 1228800 1930500 0 0 0 0 0 0 0 0 0 0 0 0 767 3942 796 3713 3746;3747 3746 2 AELANSTEVLESFK DCSAKGRNRHIVVNKAELANSTEVLESFKL KAELANSTEVLESFKLARESWELLYSLEFL K A E F K L 2 0 1 0 0 0 3 0 0 0 2 1 0 1 0 2 1 0 0 1 0 0 14 0 1536.7672 Q9NVR2;H0YBW3 Q9NVR2 401 414 INTS10 Integrator complex subunit 10 yes no 2 0.015251 45.973 By MS/MS 1 0.68705 0.73022 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68705 0.73022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4027500 2415800 1611700 0 0 0 0 0 0 4027500 2415800 1611700 0 0 0 0 0 0 0 0 0 768 4139 797 3714 3748 3748 1 AELDDTPMR GFIKLESRALAEIAKAELDDTPMRGRQLRV LAEIAKAELDDTPMRGRQLRVRFATHAAAL K A E M R G 1 1 0 2 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 9 0 1046.4703 P23246 P23246 350 358 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.00027552 138.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 6 8 5 3 1.0153 0.93418 13.174 26 Median 1.0513 1.0321 6.3948 2 0 Median 1.0832 0.9362 10.463 3 0 Median 0.85095 0.89866 14.255 6 0 Median 1.1328 0.97657 18.35 7 2 Median 0.88788 0.90157 4.0656 5 0 Median 1.2124 0.99232 10.064 3 0 Median 336910000 166440000 170470000 4639200 2258300 2380900 14508000 6546900 7961600 145460000 75329000 70132000 62512000 28088000 34424000 99111000 49394000 49717000 10675000 4824200 5850800 769 2107 798;799 3715;3716;3717;3718;3719;3720;3721;3722;3723;3724;3725;3726;3727;3728;3729;3730;3731;3732;3733;3734;3735;3736;3737;3738;3739;3740;3741 3749;3750;3751;3752;3753;3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785;3786;3787;3788;3789;3790 3755 866 42 AELDEVNK ARERARLQIEIGKLRAELDEVNKSAKKREG IEIGKLRAELDEVNKSAKKREGELTVAQGR R A E N K S 1 0 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 916.45018 Q03252 Q03252 126 133 LMNB2 Lamin-B2 yes yes 2 0.0074447 67.032 By matching By MS/MS By MS/MS 1 1 1 1.1434 1.1591 12.204 3 Median 1.0659 1.0721 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1434 1.1591 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.317 1.3619 NaN 1 1 Median NaN NaN NaN 0 0 Median 15890000 6443800 9446000 1323400 584360 739050 0 0 0 11266000 4442900 6823400 0 0 0 3300100 1416500 1883500 0 0 0 770 2709 800 3742;3743;3744 3791;3792;3793 3791 3 AELDGTILK GFIRLESRTLAEIAKAELDGTILKSRPLRI LAEIAKAELDGTILKSRPLRIRFATHGAAL K A E L K S 1 0 0 1 0 0 1 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 958.53351 Q8WXF1;X6RDA4 Q8WXF1 135 143 PSPC1 Paraspeckle component 1 yes no 2 0.0076908 67.993 By MS/MS By MS/MS By MS/MS 1 2 3 1.0918 0.94521 87.079 6 Median NaN NaN NaN 0 0 Median 0.13752 0.11458 NaN 1 1 Median 0.92602 0.90358 24.755 2 2 Median 1.16 1.036 5.7338 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98491000 66447000 32044000 0 0 0 30422000 27316000 3105600 47790000 29152000 18638000 20278000 9978000 10300000 0 0 0 0 0 0 771 3520 801 3745;3746;3747;3748;3749;3750 3794;3795;3796;3797;3798;3799 3799 6 AELDQLPDESSSAK ______________________________ MAELDQLPDESSSAKALVSLKEGSLSNTWN M A E A K A 2 0 0 2 0 1 2 0 0 0 2 1 0 0 1 3 0 0 0 0 0 0 14 0 1488.6944 Q5TKA1 Q5TKA1 2 15 LIN9 Protein lin-9 homolog yes yes 2 0.0021186 45.077 By MS/MS 1 0.80185 0.81761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80185 0.81761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3469600 2098100 1371500 0 0 0 0 0 0 3469600 2098100 1371500 0 0 0 0 0 0 0 0 0 772 3106 802 3751 3800 3800 1 AELEALGMK LGSCCSHKERLSILRAELEALGMKGTPSLG RLSILRAELEALGMKGTPSLGKCRALKEQR R A E M K G 2 0 0 0 0 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 960.49502 Q9BW71 Q9BW71 461 469 HIRIP3 HIRA-interacting protein 3 yes yes 2 0.0051046 73.26 By MS/MS 1 1.0924 1.1604 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0924 1.1604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4512900 1955200 2557700 0 0 0 0 0 0 4512900 1955200 2557700 0 0 0 0 0 0 0 0 0 773 3865 803 3752 3801 3801 1 AELEALLSSK QEAREELERQNRALRAELEALLSSKDDVGK NRALRAELEALLSSKDDVGKSVHELERACR R A E S K D 2 0 0 0 0 0 2 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 10 0 1059.5812 Q7Z406;A1L2Z2 Q7Z406 1528 1537 MYH14 Myosin-14 yes no 2 0.013464 40.002 By MS/MS 1 1.3655 1.2001 NaN 1 Median NaN NaN NaN 0 0 Median 1.3655 1.2001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1542800 649930 892870 0 0 0 1542800 649930 892870 0 0 0 0 0 0 0 0 0 0 0 0 774 3242 804 3753 3802 3802 1 AELEEVTLDGKPLQALR ______________________________ LEEVTLDGKPLQALRVTDLKAALEQRGLAK M A E L R V 2 1 0 1 0 1 3 1 0 0 4 1 0 0 1 0 1 0 0 1 0 0 17 1 1881.0207 S4R3H4 S4R3H4 2 18 ACIN1 yes yes 2 8.1345E-08 95.018 By matching By MS/MS By matching 1 5 1 0.846 0.92324 29.476 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73412 0.87947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.846 0.95701 32.276 5 0 Median 0.88651 0.79001 NaN 1 0 Median 14923000 8103600 6819500 0 0 0 0 0 0 4476500 2560100 1916400 0 0 0 10345000 5482800 4862500 101350 60743 40603 775 4560 805 3754;3755;3756;3757;3758;3759;3760 3803;3804;3805;3806;3807;3808;3809;3810 3808 8 AELEIQK PGPTLWASYSLEYGKAELEIQKDALEPGQR SYSLEYGKAELEIQKDALEPGQRVVVVDDL K A E Q K D 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 829.45453 P07741;H3BQZ9;H3BQB1 P07741 108 114 APRT Adenine phosphoribosyltransferase yes no 2 0.01311 88.029 By MS/MS 1 1.3153 1.1295 NaN 1 Median NaN NaN NaN 0 0 Median 1.3153 1.1295 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4104500 1765100 2339400 0 0 0 4104500 1765100 2339400 0 0 0 0 0 0 0 0 0 0 0 0 776 1891 806 3761 3811 3811 1 AELEIQKDALEPGQR PGPTLWASYSLEYGKAELEIQKDALEPGQR AELEIQKDALEPGQRVVVVDDLLATGGTMN K A E Q R V 2 1 0 1 0 2 3 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 15 1 1695.8792 P07741;H3BQZ9;H3BQB1 P07741 108 122 APRT Adenine phosphoribosyltransferase yes no 2;3 1.4655E-20 193.23 By MS/MS By MS/MS By MS/MS 4 2 1 0.9957 0.95985 9.9949 6 Median 0.9017 0.88152 5.3148 3 0 Median 1.1529 1.0174 8.7646 2 0 Median 1.0748 1.1106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110560000 58778000 51778000 94981000 51092000 43890000 11896000 5567700 6328400 3678600 2118500 1560100 0 0 0 0 0 0 0 0 0 777 1891 807 3762;3763;3764;3765;3766;3767;3768 3812;3813;3814;3815;3816;3817;3818;3819;3820;3821;3822 3816 11 AELELELGR ILALKASFEKAAAGKAELELELGRIRSNAE KAAAGKAELELELGRIRSNAEDTLRSKEQA K A E G R I 1 1 0 0 0 0 3 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 Q15149 Q15149 2079 2087 PLEC Plectin yes yes 2 0.0027536 69.825 By MS/MS By MS/MS By matching 2 1 1 1.4296 1.4254 6.54 4 Median 1.4296 1.4254 2.8261 2 0 Median 1.5649 1.2712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3714 1.4661 NaN 1 0 Median NaN NaN NaN 0 0 Median 40610000 16530000 24080000 28687000 11782000 16905000 10353000 4175100 6177500 0 0 0 0 0 0 1570000 572200 997830 0 0 0 778 2933 808 3769;3770;3771;3772 3823;3824 3823 2 AELFQQEQQSADKPASLPPASQASNHRDPR SDALMSPPPKSSLPKAELFQQEQQSADKPA SLPPASQASNHRDPRQARRLATETGEGEGE K A E P R Q 5 2 1 2 0 5 2 0 1 0 2 1 0 1 4 4 0 0 0 0 0 0 30 2 3302.6028 Q9BTC0 Q9BTC0 1532 1561 DIDO1 Death-inducer obliterator 1 yes yes 5 0.061627 15.132 By MS/MS 1 0.49631 0.59642 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49631 0.59642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8080900 5986500 2094400 0 0 0 0 0 0 8080900 5986500 2094400 0 0 0 0 0 0 0 0 0 779 3824 809 3773 3825 3825 1 AELGALPDDFIDSLEK NKNLNEDDTFLVFSKAELGALPDDFIDSLE ELGALPDDFIDSLEKTDDDKYKITLKYPHY K A E E K T 2 0 0 3 0 0 2 1 0 1 3 1 0 1 1 1 0 0 0 0 0 0 16 0 1731.8567 Q9BYT8;E9PCB6 Q9BYT8 218 233 NLN Neurolysin, mitochondrial yes no 2 0.00063854 44.188 By MS/MS By MS/MS 1 1 0.96543 0.90791 2.4148 2 Median 0.88536 0.89254 NaN 1 0 Median 1.0527 0.92354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4830600 2336600 2494100 1241700 653080 588580 3589000 1683500 1905500 0 0 0 0 0 0 0 0 0 0 0 0 780 3895 810 3774;3775 3826;3827;3828 3827 3 AELGEYIR AILWSLSGDSRLKMRAELGEYIRRITTVPL DSRLKMRAELGEYIRRITTVPLPTAPNIPI R A E I R R 1 1 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2512 2519 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0017928 142.64 By MS/MS By MS/MS By MS/MS 2 2 2 1.2091 1.0819 3.6012 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.022 1.0968 1.4479 2 0 Median 1.2159 1.0659 1.6062 2 0 Median NaN NaN NaN 0 0 Median 1.2699 1.0493 6.3241 2 0 Median 66451000 31394000 35058000 0 0 0 0 0 0 48102000 23356000 24746000 15108000 6690800 8416700 0 0 0 3242100 1347100 1895000 781 2865 811 3776;3777;3778;3779;3780;3781 3829;3830;3831;3832;3833;3834 3830 6 AELGEYIRR AILWSLSGDSRLKMRAELGEYIRRITTVPL SRLKMRAELGEYIRRITTVPLPTAPNIPII R A E R R I 1 2 0 0 0 0 2 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 9 1 1105.588 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2512 2520 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00071931 93.374 By MS/MS By MS/MS 1 1 1.1007 1.2028 4.9696 2 Median 1.0687 1.1613 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1336 1.2459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12582000 6127000 6455100 5147700 2602500 2545200 0 0 0 7434300 3524500 3909800 0 0 0 0 0 0 0 0 0 782 2865 812 3782;3783 3835;3836;3837 3835 3 AELGLNEHHQNEVINYMR ______________________________ GLNEHHQNEVINYMRFARSKRGLRLKTVDS M A E M R F 1 1 3 0 0 1 3 1 2 1 2 0 1 0 0 0 0 0 1 1 0 0 18 0 2166.0276 Q9NQ48 Q9NQ48 2 19 LZTFL1 Leucine zipper transcription factor-like protein 1 yes yes 3 5.2612E-12 84.874 By MS/MS 1 1.1072 1.0964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1072 1.0964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5676200 2671400 3004800 0 0 0 0 0 0 5676200 2671400 3004800 0 0 0 0 0 0 0 0 0 783 4059 813 3784 3838 3838 1 AELGTDLLSQLSLEDQKR EASLHAMESTRESLKAELGTDLLSQLSLED GTDLLSQLSLEDQKRVDALNDEIRQLQQEN K A E K R V 1 1 0 2 0 2 2 1 0 0 5 1 0 0 0 2 1 0 0 0 0 0 18 1 2015.0535 Q9UQE7 Q9UQE7 779 796 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 6.5545E-05 41.86 By MS/MS By MS/MS By MS/MS 1 1 1 0.84291 0.95473 12.747 3 Median NaN NaN NaN 0 0 Median 1.2187 1.1422 NaN 1 0 Median 0.84291 0.95473 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81103 0.89251 NaN 1 0 Median NaN NaN NaN 0 0 Median 15119000 7418800 7700500 0 0 0 5221000 2205400 3015600 5412500 2925500 2487000 0 0 0 4485800 2287900 2197900 0 0 0 784 4362 814 3785;3786;3787 3839;3840;3841;3842;3843;3844 3840 6 AELIQKK ______________________________ ______________________________ M A E K K L 1 0 0 0 0 1 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 7 1 828.5069 O15212;A2AB88 O15212 2 8 PFDN6 Prefoldin subunit 6 yes no 2 0.020428 49.358 By MS/MS 1 1.0764 1.008 NaN 1 Median 1.0764 1.008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5636900 2214000 3422900 5636900 2214000 3422900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 785 1530 815 3788 3845 3845 1 AELIVQPELK TIQELLQNCSDCLMRAELIVQPELKYGDGI DCLMRAELIVQPELKYGDGIQLTRSRELDE R A E L K Y 1 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1138.6598 P15924 P15924 85 94 DSP Desmoplakin yes yes 2 0.00033682 98.033 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 1 0.65032 0.65044 37.777 12 Median 0.65183 0.63979 20.83 2 0 Median 0.7818 0.6889 14.717 2 0 Median 0.41725 0.45498 58.067 2 1 Median 0.76012 0.71284 10.681 2 0 Median 0.61114 0.64006 45.322 3 0 Plateau 0.94659 0.81094 NaN 1 0 Median 75704000 46689000 29015000 18624000 11533000 7090400 10769000 5785200 4984000 15355000 10560000 4795100 4786100 3071600 1714500 21941000 13585000 8356100 4228700 2153500 2075100 786 2021 816 3789;3790;3791;3792;3793;3794;3795;3796;3797;3798;3799;3800;3801 3846;3847;3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862;3863 3847 18 AELLDNEKPAAVVAPITTGYTVK ETEIKNKMQQKSQKKAELLDNEKPAAVVAP PAAVVAPITTGYTVKISNYGWDQSDKFVKI K A E V K I 4 0 1 1 0 0 2 1 0 1 2 2 0 0 2 0 3 0 1 3 0 0 23 1 2399.2948 Q9HB71 Q9HB71 52 74 CACYBP Calcyclin-binding protein yes yes 2;3 5.4588E-16 67.413 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 1 1 0.79593 0.76981 32.371 10 Median 0.81616 0.79571 4.2785 3 0 Median 0.83719 0.76472 NaN 1 0 Median 0.76862 0.76529 1.7716 2 0 Median 0.68741 0.6135 34.461 2 0 Median 1.6721 1.7807 NaN 1 0 Median 0.76751 0.66612 NaN 1 0 Median 117280000 61055000 56226000 60859000 31922000 28937000 6828300 3743500 3084900 40012000 21348000 18664000 1591000 852110 738900 4840000 1559000 3281000 3149600 1629900 1519700 787 4016 817 3802;3803;3804;3805;3806;3807;3808;3809;3810;3811 3864;3865;3866;3867;3868;3869;3870;3871;3872;3873;3874 3869 11 AELLSLTQMER KDLKKRRRAQGEQARAELLSLTQMEREKIV EQARAELLSLTQMEREKIVWEFEQLYHSLK R A E E R E 1 1 0 0 0 1 2 0 0 0 3 0 1 0 0 1 1 0 0 0 0 0 11 0 1289.6649 P14373;A0A0G2JIZ4 P14373 169 179 TRIM27 Zinc finger protein RFP yes no 2 0.0070128 62.303 By MS/MS 1 1.1811 1.1899 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1811 1.1899 NaN 1 1 Median NaN NaN NaN 0 0 Median 2404300 1221100 1183200 0 0 0 0 0 0 0 0 0 0 0 0 2404300 1221100 1183200 0 0 0 788 2003 818 3812 3875 3875 1 AELMQALWR NLQPDFLYDHIQPVRAELMQALWRTLRNPA HIQPVRAELMQALWRTLRNPADSISHVAYR R A E W R T 2 1 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 9 0 1116.575 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 869 877 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00071478 102.72 By matching By MS/MS By MS/MS 1 1 2 1.1289 1.0826 27.805 4 Median NaN NaN NaN 0 0 Median 0.98845 0.84056 NaN 1 0 Median 1.0962 1.1616 NaN 1 0 Median 1.4715 1.2796 33.587 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9393800 3241600 6152200 0 0 0 1211800 651820 559970 7714100 2389900 5324200 467960 199920 268040 0 0 0 0 0 0 789 991 819 3813;3814;3815;3816 3876;3877 3876 2 AELNEFLTR QISKKRKFVADGIFKAELNEFLTRELAEDG ADGIFKAELNEFLTRELAEDGYSGVEVRVT K A E T R E 1 1 1 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;E9PQ96;E9PJH4;H0YF32;E9PK82;E9PQX2;H0YES8 P23396 19 27 RPS3 40S ribosomal protein S3 yes no 2 0.00038162 134.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 3 1 2 1.135 0.95429 16.235 17 Median 1.0313 0.96493 19.355 6 0 Median 1.1173 0.94537 13.402 5 1 Median 1.2427 1.1928 9.0824 3 0 Plateau 1.362 1.1362 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0623 0.89949 4.6333 2 0 Median 614620000 281830000 332800000 309910000 142830000 167090000 196080000 91051000 105030000 98427000 43379000 55049000 7709700 3259800 4449900 0 0 0 2493900 1310800 1183200 790 2112 820 3817;3818;3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832;3833 3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888;3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902 3880 25 AELNPWPEYIYTR GGKKKNKEGSGDGGRAELNPWPEYIYTRLE GRAELNPWPEYIYTRLEMYNILKAEHDSIL R A E T R L 1 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 1 1 2 0 0 0 13 0 1650.8042 P26639;D6RCA5;D6R9F8;D6RDJ6 P26639 45 57 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.00012032 143.24 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 0.82413 0.73837 14.491 6 Median 0.70486 0.68025 11.316 2 1 Median 0.82826 0.71709 NaN 1 0 Median 0.85622 0.89508 10.027 2 0 Median 0.85856 0.73982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40091000 21912000 18179000 16770000 9689300 7081100 4852100 2511600 2340500 16151000 8486200 7664700 2317600 1224800 1092800 0 0 0 0 0 0 791 2147 821 3834;3835;3836;3837;3838;3839 3903;3904;3905;3906;3907;3908;3909;3910;3911;3912;3913;3914 3903 12 AELPENLK TVGIFITMNPGYAGRAELPENLKALFRPCA NPGYAGRAELPENLKALFRPCAMVVPDFEL R A E L K A 1 0 1 0 0 0 2 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 0 912.49165 K7EK91;Q9UFH2 K7EK91 1952 1959 DNAH17 Dynein heavy chain 17, axonemal yes no 2 0.028216 40.573 By MS/MS 1 0.85678 0.72517 NaN 1 Median NaN NaN NaN 0 0 Median 0.85678 0.72517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10779000 6035200 4743800 0 0 0 10779000 6035200 4743800 0 0 0 0 0 0 0 0 0 0 0 0 792 1369 822 3840 3915 3915 1 AELQQLR ______________________________ ______________________________ M A E L R V 1 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 856.47667 Q96C01;E7EQY1;C9J2Y4 Q96C01 2 8 FAM136A Protein FAM136A yes no 2 0.014325 75.311 By MS/MS By matching By MS/MS By MS/MS 1 3 2 1 1.7016 1.4102 31.21 7 Median 1.008 0.98101 NaN 1 0 Median 1.8787 1.5803 28.951 3 0 Median 1.0945 1.1021 7.359 2 0 Median 1.7922 1.4102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19717000 9122700 10595000 9761300 5145400 4615900 2088600 727470 1361100 4851300 2204500 2646800 3016200 1045300 1970900 0 0 0 0 0 0 793 3612 823 3841;3842;3843;3844;3845;3846;3847 3916;3917;3918;3919;3920 3919 5 AELQTALAHTQHAAR LQVHIQTIGILVSEKAELQTALAHTQHAAR AELQTALAHTQHAARQKEGESEDLASRLQY K A E A R Q 5 1 0 0 0 2 1 0 2 0 2 0 0 0 0 0 2 0 0 0 0 0 15 0 1616.8383 A0A2Q2TH77;Q08379;B7ZC06;H0Y7B8 A0A2Q2TH77 219 233 GOLGA2 Golgin subfamily A member 2 yes no 3;4 1.9112E-07 82.908 By MS/MS By MS/MS By MS/MS 2 2 3 1.3468 1.1517 15.517 6 Median 0.95826 0.95793 10.505 2 1 Median 1.3863 1.1799 9.1917 2 2 Median NaN NaN NaN 0 0 Median 1.5069 1.2852 9.7391 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11903000 4892400 7010400 2979500 1370300 1609200 6556400 2715000 3841400 0 0 0 2366800 807040 1559800 0 0 0 0 0 0 794 355 824 3848;3849;3850;3851;3852;3853;3854 3921;3922;3923;3924;3925;3926 3925 6 AELRDDPIISTHLAK NRSLADFEKALTDYRAELRDDPIISTHLAK AELRDDPIISTHLAKLYDNLLEQNLIRVIE R A E A K L 2 1 0 2 0 0 1 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 15 1 1677.905 O00231 O00231 311 325 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 3;4 0.00010435 52.191 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 0.98522 1.0367 12.826 9 Median 0.98332 1.0042 4.5043 2 0 Median 0.97806 0.90899 3.5893 2 1 Median 1.1362 1.1529 5.3958 3 0 Median 1.0291 0.98278 19.556 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115270000 56194000 59075000 27960000 13678000 14282000 27033000 13142000 13891000 26015000 11207000 14808000 34262000 18168000 16094000 0 0 0 0 0 0 795 1448 825 3855;3856;3857;3858;3859;3860;3861;3862;3863 3927;3928;3929;3930;3931;3932;3933 3933 7 AELSEGQVR KLVIIESDLERAEERAELSEGQVRQLEEQL ERAEERAELSEGQVRQLEEQLRIMDQTLKA R A E V R Q 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 987.49852 H0YKX5;H0YL42;H7BYY1;F5H7S3;B7Z596 H0YKX5 107 115 TPM1 no no 2 0.011906 61.962 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.33962 0.32288 72.925 4 Median 0.21944 0.2066 NaN 1 1 Median 0.16128 0.13413 NaN 1 1 Median 0.52562 0.50458 NaN 1 1 Median 0.74684 0.62533 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16466000 13429000 3037200 5716700 4359900 1356800 8179800 7432000 747770 1468700 994690 474000 1100700 642010 458670 0 0 0 0 0 0 796 1193;1249 826 3864;3865;3866;3867 3934;3935;3936;3937 3936 4 AELSSLQTAR EKTRLALEAEVSELRAELSSLQTARQEGEQ VSELRAELSSLQTARQEGEQRRRRLELQLQ R A E A R Q 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1074.5669 Q7Z406;A0A0C4DFM8 Q7Z406 1255 1264 MYH14 Myosin-14 yes no 2 0.0058834 64.841 By MS/MS 1 1.0114 0.86041 NaN 1 Median NaN NaN NaN 0 0 Median 1.0114 0.86041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3533600 1563800 1969800 0 0 0 3533600 1563800 1969800 0 0 0 0 0 0 0 0 0 0 0 0 797 3242 827 3868 3938 3938 1 AELVAISSSEDEGNLR THSSSTSWFRKPMTRAELVAISSSEDEGNL ELVAISSSEDEGNLRFVYELLSWVEEMQMK R A E L R F 2 1 1 1 0 0 3 1 0 1 2 0 0 0 0 3 0 0 0 1 0 0 16 0 1688.8217 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 567 582 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 2.7608E-41 174.84 By MS/MS By MS/MS 3 1 0.83243 0.82193 28.18 4 Median 0.84408 0.82084 27.578 3 1 Plateau NaN NaN NaN 0 0 Median 0.93065 0.98369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36670000 20125000 16545000 27893000 15199000 12694000 0 0 0 8777100 4925800 3851300 0 0 0 0 0 0 0 0 0 798 1220 828 3869;3870;3871;3872 3939;3940 3939 2 AELVQGQSAPVGMK ______________________________ MAELVQGQSAPVGMKAEGFVDALHRVRQIA M A E M K A 2 0 0 0 0 2 1 2 0 0 1 1 1 0 1 1 0 0 0 2 0 0 14 0 1413.7286 Q96I24;A0A494C1K6 Q96I24 2 15 FUBP3 Far upstream element-binding protein 3 yes no 2 4.6095E-08 104.52 By MS/MS By MS/MS By MS/MS By matching 1 4 2 1 1.0453 1.0251 13.033 7 Median 0.79862 0.75526 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93823 0.90592 10.23 3 0 Median 1.1987 1.0313 0.85457 2 0 Median 1.0453 1.0702 NaN 1 0 Median NaN NaN NaN 0 0 Median 115580000 57284000 58295000 8798300 5202300 3595900 0 0 0 100810000 49276000 51533000 4355500 2126700 2228800 1616100 678730 937400 0 0 0 799 3673 829;830 3873;3874;3875;3876;3877;3878;3879;3880 3941;3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952 3942 1803 12 AELVQLVSPFLGK FLRCLVIFNQEVISRAELVQLVSPFLGKFP SRAELVQLVSPFLGKFPELFNWFKNFLGYK R A E G K F 1 0 0 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 2 0 0 13 0 1399.8075 Q96ST3 Q96ST3 498 510 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0014451 53.683 By matching By MS/MS By MS/MS By MS/MS 1 3 1 1 0.77029 0.81977 29.729 6 Median NaN NaN NaN 0 0 Median 0.99737 0.90806 NaN 1 0 Median 0.76545 0.82701 37.361 3 0 Plateau 0.93319 0.84969 NaN 1 0 Median 0.53791 0.56215 NaN 1 0 Median NaN NaN NaN 0 0 Median 5504100 3238200 2265900 0 0 0 332770 179190 153580 3153800 1857300 1296600 1005200 531340 473870 1012400 670450 341900 0 0 0 800 3737 831 3881;3882;3883;3884;3885;3886 3953;3954;3955;3956 3956 4 AELYKEPTNEELNR EPPAKGLLQPVKLSRAELYKEPTNEELNRL RAELYKEPTNEELNRLRETEILFHSSLLRL R A E N R L 1 1 2 0 0 0 4 0 0 0 2 1 0 0 1 0 1 0 1 0 0 0 14 1 1704.8319 Q9H6R4;A0A0A0MRW6 Q9H6R4 58 71 NOL6 Nucleolar protein 6 yes no 3 1.3414E-07 116.63 By MS/MS By matching By matching 1 1 3 0.90607 0.78853 15.73 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98063 1.1115 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68554 0.7541 NaN 1 0 Median 0.90607 0.78853 5.4099 3 0 Median 29420000 15710000 13710000 0 0 0 0 0 0 11431000 5500600 5930000 0 0 0 12157000 7027400 5129900 5831600 3181800 2649900 801 3976 832 3887;3888;3889;3890;3891 3957;3958 3957 2 AEMDEVER PEDMNERVLEAMTERAEMDEVERFQPLLDG LEAMTERAEMDEVERFQPLLDGLKSGTTIA R A E E R F 1 1 0 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 8 0 977.41241 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 287 294 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0033829 98.523 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1.1573 1.0682 35.676 6 Median 1.0093 0.99643 6.916 2 0 Median 1.2857 1.0764 NaN 1 0 Median 1.1163 1.21 NaN 1 0 Median 1.1998 1.06 NaN 1 0 Median 2.391 2.4994 NaN 1 0 Median NaN NaN NaN 0 0 Median 18137000 7722800 10414000 5066900 2587300 2479600 9429800 3760700 5669000 1340200 636330 703860 882950 382310 500650 1417000 356040 1061000 0 0 0 802 274 833 3892;3893;3894;3895;3896;3897 3959;3960;3961;3962;3963;3964 3963 6 AEMELGLR HLTKDMLLEVKKRMRAEMELGLRKQTHNNA EVKKRMRAEMELGLRKQTHNNAVVKMLPSF R A E L R K 1 1 0 0 0 0 2 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 917.46405 P19367 P19367 493 500 HK1 Hexokinase-1 yes yes 2 0.010382 58.981 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.051 1.0534 16.426 7 Median 1.0089 0.96196 3.8101 2 0 Median 1.3291 1.1486 16.325 3 0 Median 0.9826 1.0534 NaN 1 0 Median 1.6789 1.431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23703000 10472000 13231000 7224000 3399900 3824100 13681000 5762900 7918500 1575200 843490 731680 1222100 465530 756520 0 0 0 0 0 0 803 2064 834 3898;3899;3900;3901;3902;3903;3904 3965;3966;3967;3968;3969;3970 3965 6 AEMETLVR YALHVGITWWAPKVKAEMETLVREKGVNSF WWAPKVKAEMETLVREKGVNSFQMFMTYKD K A E V R E 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 8 0 947.47462 Q9BPU6;E7EWB4;E9PHT0;E7ESV0 Q9BPU6 143 150 DPYSL5 Dihydropyrimidinase-related protein 5 yes no 2 0.033457 67.032 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 804 3776 835 3905 3971 3971 1 AEMEVLLASK TQKRQELEAELAKVRAEMEVLLASKARAEE LAKVRAEMEVLLASKARAEEESRSTSEKSK R A E S K A 2 0 0 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 10 0 1089.574 Q15149 Q15149 1899 1908 PLEC Plectin yes yes 2 0.0074161 61.65 By MS/MS 1 2.1664 1.9269 NaN 1 Median NaN NaN NaN 0 0 Median 2.1664 1.9269 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15040000 3921100 11119000 0 0 0 15040000 3921100 11119000 0 0 0 0 0 0 0 0 0 0 0 0 805 2933 836 3906 3972 3972 1 AEMTAAAEER EKQQKALSRALLELRAEMTAAAEERIISAT LLELRAEMTAAAEERIISATSQKEAHLNVQ R A E E R I 4 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1077.4761 J3KNF5;O15078 J3KNF5 1755 1764 CEP290 Centrosomal protein of 290 kDa yes no 2 0.00078068 74.127 By matching By matching By matching By matching By MS/MS By matching 1 1 3 2 4 3 1.1164 1.0153 13.476 14 Median 1.3212 1.3278 NaN 1 0 Median 1.225 1.0573 NaN 1 0 Median 0.95575 1.0041 18.851 3 0 Median 1.2604 1.0576 4.2116 2 0 Median 0.96505 0.96082 7.9272 4 0 Median 1.3007 1.068 11.353 3 0 Plateau 44674000 22225000 22449000 141760 53770 87987 974690 478850 495840 1840300 860270 980060 688050 280730 407330 40448000 20288000 20160000 580880 263470 317410 806 1304 837 3907;3908;3909;3910;3911;3912;3913;3914;3915;3916;3917;3918;3919;3920 3973;3974 3974 428 2 AEMTVFVR DPPRPLESDVFIEDRAEMTVFVRSFDGFSS DVFIEDRAEMTVFVRSFDGFSSAQKNQEQL R A E V R S 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 2 0 0 8 0 951.48479 Q9Y5Z4 Q9Y5Z4 133 140 HEBP2 Heme-binding protein 2 yes yes 2 0.0062263 72.138 By MS/MS 1 1.1912 1.0074 NaN 1 Median NaN NaN NaN 0 0 Median 1.1912 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7168100 3482500 3685500 0 0 0 7168100 3482500 3685500 0 0 0 0 0 0 0 0 0 0 0 0 807 4473 838 3921 3975 3975 1 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK ______________________________ ETAAGGDGAEAPAKKDVKGSYVSIHSSGFR M A E K K D 6 0 2 6 0 0 6 3 0 0 2 2 0 0 1 0 1 0 1 2 0 0 32 1 3349.4594 Q13838;Q5STU3;F6WLT2;A0A0A0MT12;F6TRA5;F6S4E6;F6R6M7;A0A0G2JHN7;F6S2B7;F6U6E2 Q13838 2 33 DDX39B Spliceosome RNA helicase DDX39B yes no 3 2.3213E-65 126.64 By MS/MS By matching 1 1 0.89263 0.885 20.385 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74035 0.7662 NaN 1 0 Median 1.0762 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65927000 30761000 35165000 0 0 0 0 0 0 63464000 29875000 33589000 2463100 886410 1576700 0 0 0 0 0 0 808 2842 839 3922;3923 3976;3977 3976 2 AENFFILR EKILCHKFMRFMMMRAENFFILRRKPVEGY MRFMMMRAENFFILRRKPVEGYDISFLITN R A E L R R 1 1 1 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1008.5393 F8WCF6;P59998;F8WDD7;A0A0A6YYG9;R4GN08 F8WCF6 98 105 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2 0.0022895 110.61 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1.2042 1.1623 10.513 8 Median 1.1733 1.1017 16.452 3 0 Median 1.4317 1.1974 3.7975 2 0 Median 1.1366 1.122 8.7594 2 0 Median 1.4011 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124560000 57323000 67239000 85066000 39181000 45885000 5417700 2201400 3216300 32453000 15249000 17204000 1624500 691470 933080 0 0 0 0 0 0 809 1096 840 3924;3925;3926;3927;3928;3929;3930;3931 3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989 3980 12 AENGKLVINGNPITIFQER FQYDSTHGKFHGTVKAENGKLVINGNPITI KLVINGNPITIFQERDPSKIKWGDAGAEYV K A E E R D 1 1 3 0 0 1 2 2 0 3 1 1 0 1 1 0 1 0 0 1 0 0 19 1 2112.1328 P04406 P04406 62 80 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 3 0.013167 36.856 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 810 1850 841 3932 3990 3990 1 AENLGEVLR YYSLPFCQPSKITYKAENLGEVLRGDRIVN SKITYKAENLGEVLRGDRIVNTPFQVLMNS K A E L R G 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 999.53491 A0A0C4DFM1;Q92544 A0A0C4DFM1 56 64 TM9SF4 Transmembrane 9 superfamily member 4 yes no 2 0.00050963 101.64 By MS/MS By MS/MS 1 1 0.59595 0.52704 39.273 2 Median 0.40818 0.39924 NaN 1 1 Median 0.87011 0.69573 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42470000 24648000 17822000 12707000 8788100 3918500 29764000 15860000 13904000 0 0 0 0 0 0 0 0 0 0 0 0 811 229 842 3933;3934 3991;3992 3992 2 AENLGEVLRGDR YYSLPFCQPSKITYKAENLGEVLRGDRIVN TYKAENLGEVLRGDRIVNTPFQVLMNSEKK K A E D R I 1 2 1 1 0 0 2 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 1 1327.6844 A0A0C4DFM1;Q92544 A0A0C4DFM1 56 67 TM9SF4 Transmembrane 9 superfamily member 4 yes no 3 6.8416E-05 128.67 By MS/MS 2 1.1636 1.2544 26.047 2 Median 1.1636 1.2544 26.047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12295000 5204200 7090900 12295000 5204200 7090900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 812 229 843 3935;3936 3993;3994 3993 2 AENLVLSTNLR SSKMSELQTYVDSLKAENLVLSTNLRNFQG DSLKAENLVLSTNLRNFQGDLVKEMQLGLE K A E L R N 1 1 2 0 0 0 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 11 0 1228.6776 P49454 P49454 1444 1454 CENPF Centromere protein F yes yes 2 0.0007518 63.283 By MS/MS By MS/MS By matching 1 1 1 0.90047 0.79331 3.6217 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74319 0.79331 NaN 1 0 Median 0.90047 0.78344 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.026 0.8386 NaN 1 0 Median 8224900 3984800 4240100 0 0 0 0 0 0 6252600 2921900 3330700 891510 422820 468690 0 0 0 1080800 640060 440730 813 2383 844 3937;3938;3939 3995;3996;3997 3995 3 AENMYAQIKEEVR LNPEEGEMVEEKYQKAENMYAQIKEEVRQR QKAENMYAQIKEEVRQRALALDEAVSQSTQ K A E V R Q 2 1 1 0 0 1 3 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 13 1 1579.7664 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5969 5981 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.6585E-05 88.101 By MS/MS By matching 1 1 0.87314 0.87529 3.099 2 Median 0.8578 0.89468 NaN 1 0 Median 0.88875 0.85632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18215000 9287400 8927700 16393000 8268700 8124600 1821700 1018700 803070 0 0 0 0 0 0 0 0 0 0 0 0 814 1220 845 3940;3941 3998;3999 3998 2 AENNSEVGASGYGVPGPTWDR PTTMGGPLPPHLALKAENNSEVGASGYGVP VGASGYGVPGPTWDRGANLKDYYSRKEEQE K A E D R G 2 1 2 1 0 0 2 4 0 0 0 0 0 0 2 2 1 1 1 2 0 0 21 0 2161.9665 Q08211 Q08211 121 141 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.8425E-25 142.91 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 1 6 1 0.80453 0.83218 8.8612 16 Median 0.91962 0.88995 11.983 4 0 Median NaN NaN NaN 0 0 Median 0.76386 0.83935 11.055 4 0 Median 1.0854 0.9234 NaN 1 0 Median 0.79368 0.80472 3.7691 6 2 Median 1.0662 0.88343 NaN 1 0 Median 247150000 130630000 116520000 30977000 15474000 15502000 0 0 0 126240000 67857000 58386000 2845200 1205500 1639600 86692000 45914000 40778000 396000 183630 212370 815 2736 846 3942;3943;3944;3945;3946;3947;3948;3949;3950;3951;3952;3953;3954;3955;3956;3957 4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019 4005 20 AENPSLENHR ______________________________ ______________________________ M A E H R I 1 1 2 0 0 0 2 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 10 0 1165.5476 O00505 O00505 2 11 KPNA3 Importin subunit alpha-4 yes yes 2 0.0031667 57.96 By MS/MS By matching 1 1 1.0861 0.94473 1.0117 2 Median NaN NaN NaN 0 0 Median 1.0981 0.95151 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0742 0.938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098900 956810 1142100 0 0 0 1724200 746420 977730 0 0 0 374720 210390 164330 0 0 0 0 0 0 816 1469 847 3958;3959 4020;4021 4021 2 AENPYLFLR TGHGNLRPRKTRPLKAENPYLFLRGLPYLV KTRPLKAENPYLFLRGLPYLVNEDDVRVFF K A E L R G 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1121.5869 B9ZVT1;Q8IXT5 B9ZVT1 152 160 RBM12B RNA-binding protein 12B yes no 2 0.0034481 65.038 By matching By matching By MS/MS By matching 1 1 1 1 1.0297 0.89492 16.26 4 Median NaN NaN NaN 0 0 Median 1.3829 1.2132 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98772 0.87972 NaN 1 0 Median 0.80336 0.85197 NaN 1 0 Median 1.0736 0.91039 NaN 1 0 Median 3043900 1452000 1592000 0 0 0 329040 148130 180910 0 0 0 105610 46845 58764 2471900 1195300 1276600 137380 61684 75699 817 658 848 3960;3961;3962;3963 4022;4023 4023 2 AENQPIRDVLK QLTSSELESTLETLKAENQPIRDVLKQLIL ETLKAENQPIRDVLKQLILVLCSEENMQKA K A E L K Q 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 11 1 1281.7041 P42704 P42704 673 683 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 0.00074616 90.149 By MS/MS By MS/MS 2 1 0.80809 0.84101 24.542 3 Median 0.7335 0.76362 13.652 2 0 Median 1.2163 1.1288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25000000 13604000 11396000 13250000 7737100 5512700 11750000 5866800 5883200 0 0 0 0 0 0 0 0 0 0 0 0 818 2315 849 3964;3965;3966 4024;4025;4026;4027;4028 4026 5 AENQVLAMR KLKDELASTKQKLEKAENQVLAMRKQSEGL KQKLEKAENQVLAMRKQSEGLTKEYDRLLE K A E M R K 2 1 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1030.523 P51572;A0A2R8Y5M6 P51572 205 213 BCAP31 B-cell receptor-associated protein 31 yes no 2 9.2206E-09 150.17 By MS/MS By MS/MS By MS/MS 2 3 2 1.1137 1.0577 27.607 6 Median 1.0965 1.0372 3.2424 2 0 Median 1.583 1.3402 33.95 2 1 Median 0.9228 0.8742 28.247 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61442000 27124000 34318000 37052000 16961000 20090000 12013000 4642300 7371100 12376000 5520200 6856300 0 0 0 0 0 0 0 0 0 819 2436 850;851 3967;3968;3969;3970;3971;3972;3973 4029;4030;4031;4032;4033;4034;4035;4036 4033 1138 8 AENSESLGTVPEHER ______________________________ AENSESLGTVPEHERILQEIESTDTACVGP M A E E R I 1 1 1 0 0 0 4 1 1 0 1 0 0 0 1 2 1 0 0 1 0 0 15 0 1653.7594 E7EW84;Q8TAG9;B1AP46 E7EW84 2 16 EXOC6 Exocyst complex component 6 yes no 2 6.4998E-10 111.94 By MS/MS By MS/MS 1 1 0.7988 0.76459 7.4999 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67492 0.7251 NaN 1 1 Median 0.94541 0.80623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3765900 2138000 1627900 0 0 0 0 0 0 3207500 1904500 1303000 558430 233570 324870 0 0 0 0 0 0 820 900 852 3974;3975 4037;4038 4037 2 AENSQLTER CEELSGLHGQLQEARAENSQLTERIRSIEA QLQEARAENSQLTERIRSIEALLEAGQARD R A E E R I 1 1 1 0 0 1 2 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1046.4993 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 948 956 RRBP1 Ribosome-binding protein 1 yes no 2 0.0078737 50.607 By MS/MS 1 1.2941 1.1449 NaN 1 Median NaN NaN NaN 0 0 Median 1.2941 1.1449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 543890 205180 338710 0 0 0 543890 205180 338710 0 0 0 0 0 0 0 0 0 0 0 0 821 4222 853 3976 4039 4039 1 AENSSLNLIGK EVGLVVGNSQVAFEKAENSSLNLIGKAKTK AFEKAENSSLNLIGKAKTKENRQSIINPDW K A E G K A 1 0 2 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.6088 I3L0N3;P46459 I3L0N3 183 193 NSF Vesicle-fusing ATPase yes no 2 0.00013837 87.308 By MS/MS By MS/MS 1 1 1.3239 1.1791 32.768 2 Median 1.0308 0.9352 NaN 1 0 Median 1.7002 1.4865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24499000 10640000 13860000 11643000 6306400 5336800 12856000 4333400 8522700 0 0 0 0 0 0 0 0 0 0 0 0 822 1272 854 3977;3978 4040;4041;4042 4041 3 AENTQFVK LSELLKEGTKEAHDRAENTQFVKDFLKGNI TKEAHDRAENTQFVKDFLKGNIKKELFKLA R A E V K D 1 0 1 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 8 0 935.47125 P30519;I3L159;I3L1F5;A0A087WT44;I3L276;I3L4P8;A0A1B0GXH0;I3L463 P30519 48 55 HMOX2 Heme oxygenase 2 yes no 2 0.066188 31.289 By MS/MS By matching 1 2 0.23381 0.19703 154.2 3 Median 0.73684 0.73007 NaN 1 0 Median 0.083883 0.081598 124.67 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6265600 5397000 868560 670370 426770 243610 5595200 4970200 624950 0 0 0 0 0 0 0 0 0 0 0 0 823 2194 855 3979;3980;3981 4043 4043 1 AENTQFVKDFLK LSELLKEGTKEAHDRAENTQFVKDFLKGNI HDRAENTQFVKDFLKGNIKKELFKLATTAL R A E L K G 1 0 1 1 0 1 1 0 0 0 1 2 0 2 0 0 1 0 0 1 0 0 12 1 1438.7456 P30519;I3L159;I3L1F5;A0A087WT44;I3L276;I3L4P8;A0A1B0GXH0;I3L463 P30519 48 59 HMOX2 Heme oxygenase 2 yes no 3 0.050407 17.022 By MS/MS 1 1.0673 1.0423 NaN 1 Median 1.0673 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4438900 2040900 2398000 4438900 2040900 2398000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 824 2194 856 3982 4044 4044 1 AENYDIPSADR SNFHMDFIVAASNLRAENYDIPSADRHKSK SNLRAENYDIPSADRHKSKLIAGKIIPAIA R A E D R H 2 1 1 2 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1249.5575 P22314;Q5JRR6 P22314 870 880 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.00011268 125.56 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1.0242 0.9327 11.878 10 Median 0.82857 0.82674 15.107 3 1 Median 1.1228 0.97351 6.6175 4 0 Median 0.89207 0.95713 19.988 2 2 Median 1.021 0.86928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 265990000 126780000 139210000 47416000 24657000 22759000 209340000 97633000 111710000 7008500 3569200 3439300 2227400 922700 1304700 0 0 0 0 0 0 825 2100 857 3983;3984;3985;3986;3987;3988;3989;3990;3991;3992 4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057 4046 12 AENYDIPSADRHK SNFHMDFIVAASNLRAENYDIPSADRHKSK LRAENYDIPSADRHKSKLIAGKIIPAIATT R A E H K S 2 1 1 2 0 0 1 0 1 1 0 1 0 0 1 1 0 0 1 0 0 0 13 1 1514.7114 P22314;Q5JRR6 P22314 870 882 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 0.036384 19.74 By MS/MS 1 0.91021 0.9467 NaN 1 Median 0.91021 0.9467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3465200 2086000 1379200 3465200 2086000 1379200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 826 2100 858 3993 4058 4058 1 AEPAKIEAFR EEEGKGKDASGNKVKAEPAKIEAFRASLSK GNKVKAEPAKIEAFRASLSKLGDVYVNDAF K A E F R A 3 1 0 0 0 0 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 10 1 1130.6084 P00558 P00558 142 151 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.016912 56.258 By MS/MS 3 0.90504 0.75295 15.624 3 Plateau 0.90504 0.75295 15.624 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12025000 5904300 6120600 12025000 5904300 6120600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 827 1824 859 3994;3995;3996 4059;4060;4061 4060 3 AEPASVAAESLAGSR ______________________________ AEPASVAAESLAGSRARAARTVLGQVVLPG M A E S R A 5 1 0 0 0 0 2 1 0 0 1 0 0 0 1 3 0 0 0 1 0 0 15 0 1414.7052 Q9NQT5 Q9NQT5 2 16 EXOSC3 Exosome complex component RRP40 yes yes 2 2.5255E-20 192.68 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.95996 0.9258 49.938 7 Median 1.6384 1.6726 95.432 2 0 Median NaN NaN NaN 0 0 Median 0.93159 0.90687 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9925 1.0342 9.365 2 0 Median 0.9826 0.83085 15.304 2 0 Median 58994000 29397000 29597000 21497000 10808000 10689000 0 0 0 14952000 7623800 7327900 0 0 0 21646000 10556000 11090000 899080 409020 490060 828 4067 860 3997;3998;3999;4000;4001;4002;4003 4062;4063;4064;4065;4066;4067;4068 4067 7 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR SQKRSEKPPAGSICRAEPEAGEEQAGDDRD GGPVLQFDYEAVANRLFEMASRQSTPSQNR R A E N R L 5 2 1 4 0 2 5 4 0 0 1 0 0 1 2 1 0 0 1 2 0 0 31 1 3291.4552 P56182 P56182 276 306 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 3 0.010217 19.324 By MS/MS 1 0.64218 0.6879 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64218 0.6879 NaN 1 0 Median NaN NaN NaN 0 0 Median 3116000 1593900 1522100 0 0 0 0 0 0 0 0 0 0 0 0 3116000 1593900 1522100 0 0 0 829 2507 861 4004 4069;4070 4070 2 AEPEDHYFLLTEPPLNTPENR LMERFMEQVIFKYLRAEPEDHYFLLTEPPL YFLLTEPPLNTPENREYTAEIMFESFNVPG R A E N R E 1 1 2 1 0 0 4 0 1 0 3 0 0 1 4 0 2 0 1 0 0 0 21 0 2481.1812 B4DXW1;P61158;F8WDR7 B4DXW1 52 72 ACTR3 Actin-related protein 3 yes no 3 1.3861E-14 94.856 By MS/MS By matching 2 1 0.66481 0.5788 17.848 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59565 0.61424 24.77 2 0 Median 0.66481 0.5788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22777000 13769000 9007300 0 0 0 0 0 0 20979000 12687000 8292200 1797300 1082200 715090 0 0 0 0 0 0 830 607 862 4005;4006;4007 4071;4072;4073;4074;4075;4076;4077 4073 7 AEPLNSVAH IDEETDSALDLGNIRAEPLNSVAH______ DLGNIRAEPLNSVAH_______________ R A E A H - 2 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 9 0 936.46649 O95777;C9JIZ0 O95777 88 96 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes no 2 0.017257 57.177 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748500 0 0 0 0 0 1748500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 831 1792 863 4008 4078;4079 4078 2 AEPMQWASLELPAAK YVTMTATKIEITMRKAEPMQWASLELPAAK AEPMQWASLELPAAKKQEKQKDATTD____ K A E A K K 4 0 0 0 0 1 2 0 0 0 2 1 1 0 2 1 0 1 0 0 0 0 15 0 1640.8232 Q9UHD1;E9PHZ2 Q9UHD1 307 321 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.021419 43.628 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 832 4275 864 4009 4080 4080 1 AEPPKAPEQEQAAPGPAAGGEAPK PKAEPEKTEGAAEAKAEPPKAPEQEQAAPG EQAAPGPAAGGEAPKAAEAAAAPAESAAPA K A E P K A 7 0 0 0 0 2 4 3 0 0 0 2 0 0 6 0 0 0 0 0 0 0 24 1 2297.1288 P80723 P80723 98 121 BASP1 Brain acid soluble protein 1 yes yes 3 4.0147E-12 57.826 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 0.33332 0.35575 21.619 9 Median 0.32915 0.31403 2.802 2 1 Median 0.48739 0.45691 9.5131 2 0 Median 0.29014 0.30293 NaN 1 0 Median 0.45228 0.45209 NaN 1 0 Median 0.33332 0.35575 22.331 3 1 Median NaN NaN NaN 0 0 Median 59586000 42729000 16857000 12347000 9038700 3308400 9599700 6256700 3343000 11508000 8308800 3199000 860100 576540 283560 25271000 18548000 6723100 0 0 0 833 2649 865 4010;4011;4012;4013;4014;4015;4016;4017;4018 4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092 4085 12 AEPPQAMNALMR SPSKKKKKIQKKEEKAEPPQAMNALMRLNQ EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K A E M R L 3 1 1 0 0 1 1 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 12 0 1327.6377 Q12906 Q12906 397 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 6.0933E-18 140.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 5 3 0.78149 0.75536 9.7027 13 Median 0.82904 0.78424 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8183 0.75536 10.386 3 0 Plateau 1.0295 0.88117 2.4389 2 1 Median 0.72317 0.74884 5.4434 4 0 Median 0.88109 0.71164 6.0945 3 0 Plateau 219600000 122210000 97388000 15839000 10314000 5524800 0 0 0 88910000 49094000 39816000 13324000 6038400 7285600 89943000 50547000 39396000 11585000 6219700 5365100 834 2769 866;867 4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033 4093;4094;4095;4096;4097;4098;4099;4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113 4094 1484 21 AEPSGAETRPPIR ______________________________ ______________________________ M A E I R V 2 2 0 0 0 0 2 1 0 1 0 0 0 0 3 1 1 0 0 0 0 0 13 1 1379.7157 Q9NRR5 Q9NRR5 2 14 UBQLN4 Ubiquilin-4 yes yes 2 0.042423 61.65 By MS/MS 1 0.50487 0.49742 NaN 1 Median 0.50487 0.49742 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11187000 7697300 3490100 11187000 7697300 3490100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 835 4087 868 4034 4114 4114 1 AEPTAAPHPVLK EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI QAKAEPTAAPHPVLKQVIKPRRKLAFRSGE K A E L K Q 3 0 0 0 0 0 1 0 1 0 1 1 0 0 3 0 1 0 0 1 0 0 12 0 1229.6768 Q86YP4 Q86YP4 488 499 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.0060997 39.305 By MS/MS 1 0.63996 0.68057 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63996 0.68057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1805400 1148000 657400 0 0 0 0 0 0 1805400 1148000 657400 0 0 0 0 0 0 0 0 0 836 3309 869 4035 4115 4115 1 AEPTHWCLLVR RSSQPPADRDPAPFRAEPTHWCLLVRENGT APFRAEPTHWCLLVRENGTMEIYQLPDWRL R A E V R E 1 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 1 1 0 1 0 0 11 0 1380.6972 Q10570 Q10570 779 789 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 3 0.0012917 64.82 By MS/MS 1 0.94493 0.99874 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94493 0.99874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8837600 4710200 4127400 0 0 0 0 0 0 8837600 4710200 4127400 0 0 0 0 0 0 0 0 0 837 2753 870 4036 4116 4116 1 AEPTQNALPFSHSSAISK DDERTPDVTQNSEPRAEPTQNALPFSHSSA TQNALPFSHSSAISKHWEAELATLKGNNAK R A E S K H 3 0 1 0 0 1 1 0 1 1 1 1 0 1 2 4 1 0 0 0 0 0 18 0 1883.9377 Q86YM7 Q86YM7 164 181 HOMER1 Homer protein homolog 1 yes yes 3 0.022224 25.586 By MS/MS 2 0.99535 1.0278 2.1628 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99535 1.0278 2.1628 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41419000 20737000 20682000 0 0 0 0 0 0 41419000 20737000 20682000 0 0 0 0 0 0 0 0 0 838 3307 871 4037;4038 4117;4118 4118 2 AEPVEVVAPR LFLAHILSPWGAEVKAEPVEVVAPRGKSGA GAEVKAEPVEVVAPRGKSGAALSKKSKGQV K A E P R G 2 1 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 10 0 1065.5819 P09874 P09874 487 496 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 1;2 0.00032996 124.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 8 6 2 5 0.87524 0.82455 37.501 22 Median 0.69599 0.67145 NaN 1 0 Median 0.93817 0.79502 14.463 2 0 Median 0.76089 0.83633 9.2399 7 1 Median 0.93404 0.8053 12.454 6 0 Median 0.36874 0.4044 132.44 2 0 Median 1.0651 0.88879 13.111 4 0 Median 638240000 341680000 296560000 8235000 4309400 3925600 29243000 14386000 14858000 328540000 183900000 144640000 182080000 91995000 90087000 29581000 20655000 8926000 60557000 26429000 34128000 839 1922 872 4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062 4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149;4150;4151;4152;4153;4154 4122 35 AEPWGNELASAAAR ______________________________ MAEPWGNELASAAARGDLEQLTSLLQNNVN M A E A R G 5 1 1 0 0 0 2 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 14 0 1441.695 P42773 P42773 2 15 CDKN2C Cyclin-dependent kinase 4 inhibitor C yes yes 2 0.00035856 72.652 By MS/MS 1 0.97997 0.97471 NaN 1 Median 0.97997 0.97471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4198100 1904600 2293500 4198100 1904600 2293500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 840 2317 873 4063 4155;4156 4155 2 AEPWLSQPASGSAYATPGAYGDIRPSAASWVGSR EDAPLRARPAAASPRAEPWLSQPASGSAYA YGDIRPSAASWVGSRGLAYPARPAQLRRRA R A E S R G 7 2 0 1 0 1 1 4 0 1 1 0 0 0 4 6 1 2 2 1 0 0 34 1 3462.6593 Q8NC56 Q8NC56 85 118 LEMD2 LEM domain-containing protein 2 yes yes 3 0.0089351 17.934 By matching By MS/MS 1 3 0.50746 0.54518 26.892 4 Median 0.37366 0.37734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55723 0.60257 17.776 3 0 Median NaN NaN NaN 0 0 Median 12819000 7872800 4946500 590200 373670 216530 0 0 0 0 0 0 0 0 0 12229000 7499200 4730000 0 0 0 841 3415 874 4064;4065;4066;4067 4157;4158 4158 2 AEQATVTSEFESYK QQRVTALQEECRAAKAEQATVTSEFESYKV KAEQATVTSEFESYKVRVHNVLKQQKNKSM K A E Y K V 2 0 0 0 0 1 3 0 0 0 0 1 0 1 0 2 2 0 1 1 0 0 14 0 1588.7257 Q8IWJ2 Q8IWJ2 1311 1324 GCC2 GRIP and coiled-coil domain-containing protein 2 yes yes 2 0.022064 43.991 By MS/MS 1 1.1116 1.0709 NaN 1 Median 1.1116 1.0709 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3614500 1837700 1776800 3614500 1837700 1776800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 842 3326 875 4068 4159 4159 1 AEQDEAEKLQR ______________________________ LLAKAEQDEAEKLQRITVHKELELQFDLGN K A E Q R I 2 1 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1315.6368 Q15050 Q15050 13 23 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2;3 4.5556E-05 140.75 By MS/MS By MS/MS 5 2 0.98194 1.0722 6.8928 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98163 1.0575 6.9973 5 0 Median 1.2033 1.1035 NaN 1 0 Median 29586000 13705000 15881000 0 0 0 0 0 0 0 0 0 0 0 0 28731000 13344000 15387000 854920 361110 493800 843 2920 876 4069;4070;4071;4072;4073;4074;4075 4160;4161;4162;4163;4164;4165;4166;4167;4168 4160 9 AEQDVENDLLDYDEEEEPQAPQESTPAPPKK ______________________________ EPQAPQESTPAPPKKDIKGSYVSIHSSGFR M A E K K D 3 0 1 4 0 3 7 0 0 0 2 2 0 0 5 1 1 0 1 1 0 0 31 1 3510.5798 O00148;K7EQN7;K7EN69;K7ENP6;K7EL56;K7EIL8 O00148 2 32 DDX39A ATP-dependent RNA helicase DDX39A yes no 3 1.0681E-29 89.149 By MS/MS 1 0.37441 0.39143 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37441 0.39143 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10265000 8453800 1811700 0 0 0 0 0 0 10265000 8453800 1811700 0 0 0 0 0 0 0 0 0 844 1441 877 4076 4169 4169 1 AEQEEEFISNTLFK ENRDLRKASVTIQARAEQEEEFISNTLFKK RAEQEEEFISNTLFKKIQALQKEKETLAVN R A E F K K 1 0 1 0 0 1 4 0 0 1 1 1 0 2 0 1 1 0 0 0 0 0 14 0 1683.7992 Q16204 Q16204 105 118 CCDC6 Coiled-coil domain-containing protein 6 yes yes 2 0.010477 33.89 By MS/MS 1 0.75744 0.72604 NaN 1 Median 0.75744 0.72604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4654900 2335000 2319900 4654900 2335000 2319900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 845 2980 878 4077 4170;4171 4171 2 AEQESGLYR IISEWDEQERIAQEKAEQESGLYRYRSRNS RIAQEKAEQESGLYRYRSRNSRTALSEEEE K A E Y R Y 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1051.4934 Q9NU22 Q9NU22 3546 3554 MDN1 Midasin yes yes 2 0.017009 42.109 By matching By MS/MS 1 1 1.11 1.1342 14.537 2 Median NaN NaN NaN 0 0 Median 1.104 1.0234 NaN 1 0 Median 1.1159 1.257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12326000 5317700 7008700 0 0 0 11022000 4716900 6305000 1304500 600780 703670 0 0 0 0 0 0 0 0 0 846 4112 879 4078;4079 4172 4172 1 AEQINQAAGEASAVLAK EGKKQAQILASEAEKAEQINQAAGEASAVL QINQAAGEASAVLAKAKAKAEAIRILAAAL K A E A K A 6 0 1 0 0 2 2 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 17 0 1669.8635 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 234 250 STOML2 Stomatin-like protein 2, mitochondrial yes no 2;3 1.1907E-10 90.731 By MS/MS By matching By MS/MS By matching 3 2 1 1 1.2797 1.1729 20.229 7 Median 1.1257 1.0337 7.2286 3 1 Plateau 1.5921 1.3594 20.872 2 0 Median 1.2797 1.3595 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4488 1.2019 NaN 1 0 Median 67364000 30971000 36393000 59145000 27576000 31569000 3164200 1266600 1897600 4604000 1960900 2643100 0 0 0 0 0 0 450700 167350 283350 847 4304 880 4080;4081;4082;4083;4084;4085;4086 4173;4174;4175;4176 4176 4 AEQLGAEGNVDESQK KVHELNEEIGKLLAKAEQLGAEGNVDESQK AEQLGAEGNVDESQKILMEVEKVRAKKKEA K A E Q K I 2 0 1 1 0 2 3 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 15 0 1573.722 Q9NQ29;A8MYV2;B8ZZ10;B8ZZ09 Q9NQ29 140 154 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 2.7548E-09 100.55 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1.0416 1.0162 20.034 9 Median 0.86393 0.84859 NaN 1 0 Median 1.3673 1.179 NaN 1 0 Median 0.88183 0.94089 17.136 2 0 Median 0.88862 0.74266 NaN 1 0 Median 0.8876 0.84788 26.949 2 2 Median 1.3395 1.1204 13.795 2 0 Median 16240000 8354400 7885800 776870 357950 418920 2626800 1078400 1548400 3084400 1727800 1356600 539350 300690 238660 5799200 3356100 2443100 3413600 1533400 1880200 848 4058 881 4087;4088;4089;4090;4091;4092;4093;4094;4095 4177;4178;4179;4180;4181;4182;4183;4184;4185;4186;4187 4182 11 AEQMFGEMEVWNAISER LENHEKMTSTTRYKKAEQMFGEMEVWNAIS QMFGEMEVWNAISERDRLEIYEDVLFFLSK K A E E R D 2 1 1 0 0 1 4 1 0 1 0 0 2 1 0 1 0 1 0 1 0 0 17 0 2025.8924 O75400;A0A3F2YNY6 O75400 486 502 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2;3 0.00029332 45.915 By MS/MS By matching 4 1 0.99897 1.0549 4.1495 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97513 1.0363 3.2033 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3201 1.1152 NaN 1 0 Median 2714300 1417600 1296600 0 0 0 0 0 0 2647700 1392500 1255200 0 0 0 0 0 0 66575 25136 41438 849 1670 882 4096;4097;4098;4099;4100 4188;4189;4190 4188 3 AEQMHQSFVAETSQR ELVQIKGEIEENLMKAEQMHQSFVAETSQR AEQMHQSFVAETSQRISKLQEDTSAHQNVV K A E Q R I 2 1 0 0 0 3 2 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 15 0 1747.7948 P49454 P49454 870 884 CENPF Centromere protein F yes yes 3 9.108E-05 62.377 By MS/MS By MS/MS 1 1 1.1037 1.0672 12.013 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0819 1.1619 NaN 1 0 Median 1.1259 0.98033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7402400 3949000 3453400 0 0 0 0 0 0 5262300 2934400 2327900 2140100 1014600 1125500 0 0 0 0 0 0 850 2383 883 4101;4102 4191;4192;4193;4194 4193 4 AEQPHQHAMYYLR EIIKEAYMRSLNNFRAEQPHQHAMYYLRLL FRAEQPHQHAMYYLRLLMTEVAWTKDELKE R A E L R L 2 1 0 0 0 2 1 0 2 0 1 0 1 0 1 0 0 0 2 0 0 0 13 0 1642.7674 P14735;A0A3B3ISG5 P14735 675 687 IDE Insulin-degrading enzyme yes no 2;3;4 0.00055529 67.456 By MS/MS By MS/MS 2 3 0.96942 0.8939 41.148 4 Median 0.63816 0.62381 60.432 2 1 Median 1.0475 0.89765 10.149 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13897000 8170200 5726500 9337800 5820900 3517000 4558800 2349300 2209500 0 0 0 0 0 0 0 0 0 0 0 0 851 423 884 4103;4104;4105;4106;4107 4195;4196;4197;4198;4199 4199 5 AEQQQREEAGGEAAAAAAAER SLGNPPPPPPSELKKAEQQQREEAGGEAAA EEAGGEAAAAAAAERGEMKAAAGQESEGPA K A E E R G 9 2 0 0 0 3 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 1 2112.9784 O14497 O14497 27 47 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 1.4738E-14 95.195 By matching By MS/MS 1 1 0.97593 1.0214 2.6822 2 Median NaN NaN NaN 0 0 Median 1.2006 1.0409 NaN 1 0 Median 0.79333 1.0022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10182000 4510500 5671500 0 0 0 1568400 644440 923950 8613600 3866000 4747600 0 0 0 0 0 0 0 0 0 852 1480 885 4108;4109 4200;4201 4200 2 AEQSLHDLQER EHMKKMMKDLEGLHRAEQSLHDLQERLHKA GLHRAEQSLHDLQERLHKAQEEHRTVEVEK R A E E R L 1 1 0 1 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1324.6371 Q13586;E9PNJ4;G0XQ39 Q13586 254 264 STIM1 Stromal interaction molecule 1 yes no 2;3 0.019433 45.368 By MS/MS By MS/MS 1 1 0.92001 0.8586 8.6406 2 Median 0.91941 0.91269 NaN 1 1 Median 0.92061 0.80771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2861300 1348100 1513300 1305000 615320 689730 1556300 732770 823540 0 0 0 0 0 0 0 0 0 0 0 0 853 2827 886 4110;4111 4202;4203 4202 2 AEQVALSR ______________________________ ______________________________ M A E S R T 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 872.47158 P11413;E7EUI8;E9PD92;E7EM57 P11413 2 9 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.012532 55.37 By MS/MS By matching By matching By matching 1 1 1 1 1.0829 1.1149 30.458 4 Median 1.0478 1.039 NaN 1 0 Median 0.90578 0.77196 NaN 1 0 Median 1.1192 1.1963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8296 1.606 NaN 1 0 Median 10037000 4804400 5233100 3982100 1967600 2014500 3673600 1834600 1839000 1937400 856980 1080400 0 0 0 0 0 0 444380 145160 299220 854 1964 887 4112;4113;4114;4115 4204 4204 1 AEQWNVNYVETSAK LEDKRQVSVEEAKNRAEQWNVNYVETSAKT RAEQWNVNYVETSAKTRANVDKVFFDLMRE R A E A K T 2 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 2 0 0 14 0 1637.7686 P11233;H7C3P7 P11233 146 159 RALA Ras-related protein Ral-A yes no 2 2.4114E-08 140.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.0575 0.93126 22.211 6 Median 0.76017 0.70291 NaN 1 0 Median 0.82133 0.69112 NaN 1 0 Median 0.97417 0.91324 NaN 1 0 Median 1.148 0.94965 NaN 1 0 Median 1.1663 1.1901 NaN 1 0 Median 1.3112 1.0845 NaN 1 0 Median 70931000 33752000 37179000 36440000 17028000 19412000 4212100 2063100 2149000 17595000 8777400 8818000 1538200 780420 757770 5882600 2700100 3182400 5262900 2402700 2860200 855 1958 888 4116;4117;4118;4119;4120;4121 4205;4206;4207;4208;4209;4210;4211;4212 4205 8 AERDSALETLQGQLEEK ADSLERSLEAERASRAERDSALETLQGQLE RDSALETLQGQLEEKAQELGHSQSALASAQ R A E E K A 2 1 0 1 0 2 4 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 17 1 1915.9487 A0A087WY61;Q14980 Q14980 1158 1174 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 2.9005E-11 85.362 By MS/MS 1 0.63088 0.75578 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63088 0.75578 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30435000 18642000 11793000 0 0 0 0 0 0 30435000 18642000 11793000 0 0 0 0 0 0 0 0 0 856 2905;77 889 4122 4213 4213 1 AERGELDLTGAK ______________________________ ______________________________ M A E A K Q 2 1 0 1 0 0 2 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 12 1 1258.6517 P13984 P13984 2 13 GTF2F2 General transcription factor IIF subunit 2 yes yes 2 1.7469E-06 107.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.9377 1.0095 40.123 6 Plateau 1.1458 1.1518 NaN 1 0 Median 0.62057 0.57773 NaN 1 1 Median 0.94964 1.0004 NaN 1 0 Median 1.0085 0.89274 46.832 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58227000 29814000 28412000 13056000 7470000 5585500 3302200 2073500 1228700 24605000 11958000 12647000 17264000 8313200 8951000 0 0 0 0 0 0 857 1999 890 4123;4124;4125;4126;4127;4128 4214;4215;4216;4217;4218;4219;4220;4221 4217 8 AERPEDLNLPNAVITR ______________________________ ERPEDLNLPNAVITRIIKEALPDGVNISKE M A E T R I 2 2 2 1 0 0 2 0 0 1 2 0 0 0 2 0 1 0 0 1 0 0 16 1 1806.9588 Q9NRF9 Q9NRF9 2 17 POLE3 DNA polymerase epsilon subunit 3 yes yes 2;3 4.7453E-10 116.84 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 0.80104 0.80369 11.824 7 Median 0.68091 0.71371 0.74445 2 0 Median NaN NaN NaN 0 0 Median 0.82682 0.89791 4.261 2 0 Median 0.80104 0.71726 NaN 1 0 Median 0.76227 0.85666 9.0273 2 0 Median NaN NaN NaN 0 0 Median 119000000 67230000 51768000 28051000 14779000 13272000 0 0 0 85033000 49519000 35514000 715560 412740 302810 5197800 2519300 2678500 0 0 0 858 4081 891 4129;4130;4131;4132;4133;4134;4135 4222;4223;4224;4225;4226;4227;4228;4229;4230;4231;4232 4227 11 AESAPLPVSADDTPEVLNR EAKVDGETASDSESRAESAPLPVSADDTPE PLPVSADDTPEVLNRALSNLSSRWKNWWVR R A E N R A 3 1 1 2 0 0 2 0 0 0 2 0 0 0 3 2 1 0 0 2 0 0 19 0 1979.98 O95674 O95674 39 57 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 2;3 0.024561 27.7 By MS/MS By MS/MS 1 2 0.93865 0.83368 13.489 3 Median 0.93865 0.93199 NaN 1 0 Median 0.89296 0.77073 11.103 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9307200 4818400 4488800 6872600 3663100 3209500 2434600 1155400 1279300 0 0 0 0 0 0 0 0 0 0 0 0 859 1785 892 4136;4137;4138 4233;4234 4233 1 AESDWDTVTVLR ______________________________ ______________________________ M A E L R K 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 1 2 1 0 2 0 0 12 0 1390.6729 O60869 O60869 2 13 EDF1 Endothelial differentiation-related factor 1 yes yes 2 5.6054E-06 125.75 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.1219 1.0685 9.3636 5 Median 1.1044 1.0685 NaN 1 0 Median 1.1645 0.96733 NaN 1 0 Median 1.1086 1.0935 2.0997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.125 0.88553 NaN 1 0 Median 56217000 25961000 30255000 13834000 6528900 7305600 1666800 775060 891770 40482000 18536000 21945000 0 0 0 0 0 0 233680 121240 112440 860 1635 893 4139;4140;4141;4142;4143 4235;4236;4237;4238;4239;4240;4241;4242;4243 4236 9 AESDWDTVTVLRK ______________________________ ______________________________ M A E R K K 1 1 0 2 0 0 1 0 0 0 1 1 0 0 0 1 2 1 0 2 0 0 13 1 1518.7678 O60869 O60869 2 14 EDF1 Endothelial differentiation-related factor 1 yes yes 2 1.7988E-06 121.9 By MS/MS By MS/MS 1 2 1.0586 1.0839 4.9444 3 Median 1.0586 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0713 1.1174 4.3093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23435000 10566000 12869000 11689000 5354500 6335000 0 0 0 11745000 5211200 6534100 0 0 0 0 0 0 0 0 0 861 1635 894 4144;4145;4146 4244;4245;4246;4247;4248 4247 5 AESEASLLNVSTPK KTSIPVKDIKLTQSKAESEASLLNVSTPKS KAESEASLLNVSTPKSTRRSGRISSTPTTE K A E P K S 2 0 1 0 0 0 2 0 0 0 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1444.7409 A0A075B754;Q96QE3 A0A075B754 579 592 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.0014841 62.408 By MS/MS 1 0.62763 0.69956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62763 0.69956 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3145800 2020700 1125200 0 0 0 0 0 0 3145800 2020700 1125200 0 0 0 0 0 0 0 0 0 862 10 895 4147 4249 4249 1 AESEEGPDVLR QEAAAVLMARLGVFRAESEEGPDVLRWLDR GVFRAESEEGPDVLRWLDRQLIRLCQKFGQ R A E L R W 1 1 0 1 0 0 3 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1200.5622 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 518 528 SEC23B Protein transport protein Sec23B yes no 2 0.00019975 96.331 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1326 0.98704 22.381 4 Median 0.92446 0.8806 NaN 1 0 Median 0.99901 0.86752 NaN 1 0 Median 1.3288 1.3942 NaN 1 1 Median 1.284 1.1063 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15385000 7425400 7959400 6074000 2642700 3431300 2267100 1110600 1156500 4925500 2671200 2254400 2118200 1001000 1117200 0 0 0 0 0 0 863 401 896 4148;4149;4150;4151 4250;4251;4252;4253;4254;4255 4251 6 AESEEMETSQAGSK PHVEEQQQQTPAENKAESEEMETSQAGSKD KAESEEMETSQAGSKDKKMDQPPQAKKAKV K A E S K D 2 0 0 0 0 1 4 1 0 0 0 1 1 0 0 3 1 0 0 0 0 0 14 0 1482.6144 P34932;A0A087WYC1 P34932 544 557 HSPA4 Heat shock 70 kDa protein 4 yes no 2 7.077E-07 144.65 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1846 1.1139 12.613 5 Median 1.1066 1.1139 NaN 1 0 Median 1.1711 1.0063 15.144 2 1 Median 1.221 1.2668 NaN 1 0 Median 1.1846 1.011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17215000 7805400 9409600 1525300 670240 855100 14362000 6552500 7809900 968130 430600 537530 359150 152080 207070 0 0 0 0 0 0 864 2230 897;898 4152;4153;4154;4155;4156 4256;4257;4258;4259 4258 969 4 AESFMFR KGTMVTIEGPRFSSRAESFMFRTWGADVIN EGPRFSSRAESFMFRTWGADVINMTTVPEV R A E F R T 1 1 0 0 0 0 1 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 7 0 886.40072 B4DUC8;Q13126;J3QSB7 B4DUC8 198 204 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 2 0.017766 64.776 By MS/MS By matching By matching 1 3 1 1.3395 1.1904 12.37 5 Median 1.2713 1.1904 NaN 1 0 Median 1.3395 1.1421 11.265 3 0 Median NaN NaN NaN 0 0 Median 1.6621 1.3973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15269000 6602400 8667100 13237000 5803100 7434000 1958500 775190 1183300 0 0 0 73891 24089 49802 0 0 0 0 0 0 865 604 899 4157;4158;4159;4160;4161 4260;4261 4260 2 AESGDSLGSEDRDLLYSIDAYR ESPKPGKFQRTRVPRAESGDSLGSEDRDLL GSEDRDLLYSIDAYRSQRFKETERPSIKQV R A E Y R S 2 2 0 4 0 0 2 2 0 1 3 0 0 0 0 4 0 0 2 0 0 0 22 1 2431.1139 Q9NQW6 Q9NQW6 656 677 ANLN Actin-binding protein anillin yes yes 3 2.0265E-12 71.742 By MS/MS 2 0.99319 1.1774 4.91 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99319 1.1774 4.91 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9100400 4145600 4954800 0 0 0 0 0 0 9100400 4145600 4954800 0 0 0 0 0 0 0 0 0 866 4069 900 4162;4163 4262;4263 4263 2 AESGESGGPPGSQDSAAGAEGAGAPAAAASAEPK ______________________________ EGAGAPAAAASAEPKIMKVTVKTPKEKEEF M A E P K I 11 0 0 1 0 1 4 7 0 0 0 1 0 0 4 5 0 0 0 0 0 0 34 0 2909.2911 Q9UMX0 Q9UMX0 2 35 UBQLN1 Ubiquilin-1 yes yes 3 3.288E-15 55.702 By MS/MS 1 0.43516 0.40952 NaN 1 Median 0.43516 0.40952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10663000 6110400 4552500 10663000 6110400 4552500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 867 4335 901 4164 4264 4264 1 AESGPDLR GGSHPRINTLGRMIRAESGPDLRYEVTSGG TLGRMIRAESGPDLRYEVTSGGGGTSRMYY R A E L R Y 1 1 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 8 0 843.40865 P15924 P15924 20 27 DSP Desmoplakin yes yes 2 0.020415 46.426 By matching By matching By MS/MS By matching 1 1 1 1 0.57864 0.55093 26.54 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3545 0.39298 NaN 1 0 Median 0.59296 0.51421 NaN 1 0 Median 0.56467 0.59028 NaN 1 0 Median 0.89224 0.74129 NaN 1 0 Median 2320800 1394200 926630 0 0 0 0 0 0 213390 149680 63718 241170 134730 106440 1419900 867820 552040 446370 241930 204440 868 2021 902 4165;4166;4167;4168 4265;4266 4265 2 AESIIIR ______________________________ ______________________________ M A E I R V 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 7 0 800.4756 Q8TAT6;I3L4U9 Q8TAT6 2 8 NPLOC4 Nuclear protein localization protein 4 homolog yes no 2 0.04531 43 By MS/MS By matching By matching By matching 1 1 1 2 1.3641 1.2269 6.9376 5 Median 1.0773 1.0901 NaN 1 0 Median 1.3641 1.1769 NaN 1 0 Median 1.2064 1.2764 NaN 1 0 Median 1.5118 1.2602 3.7815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5478200 2202300 3275900 1914200 735420 1178800 1495400 600900 894530 1718400 721960 996430 350230 144010 206220 0 0 0 0 0 0 869 3456 903 4169;4170;4171;4172;4173 4267 4267 1 AESLQQEVEALKER AIEMATLDKEMAEERAESLQQEVEALKERV RAESLQQEVEALKERVDELTTDLEILKAEI R A E E R V 2 1 0 0 0 2 4 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 14 1 1628.837 E7EX90;Q14203;Q6AWB1 E7EX90 301 314 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2;3 1.0269E-07 115.12 By MS/MS By MS/MS 2 1 1.0319 1.0352 34.669 3 Plateau 0.74138 0.7455 46.428 2 1 Median NaN NaN NaN 0 0 Median 0.79817 0.90419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27383000 14222000 13160000 20988000 10634000 10354000 0 0 0 6394600 3588300 2806200 0 0 0 0 0 0 0 0 0 870 906 904 4174;4175;4176 4268;4269;4270;4271 4268 4 AESLQVTR RHIKASTKVEVDMEKAESLQVTRGDFLASL VEVDMEKAESLQVTRGDFLASLENDIKPAF K A E T R G 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 0 902.48214 I3L0N3;P46459 I3L0N3 465 472 NSF Vesicle-fusing ATPase yes no 2 0.0072183 67.981 By MS/MS 1 1.28 1.1081 NaN 1 Median NaN NaN NaN 0 0 Median 1.28 1.1081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4935900 2333700 2602300 0 0 0 4935900 2333700 2602300 0 0 0 0 0 0 0 0 0 0 0 0 871 1272 905 4177 4272 4272 1 AESMLQQADK DINMSGFNETDDLKRAESMLQQADKLGCRQ DDLKRAESMLQQADKLGCRQFVTPADVVSG R A E D K L 2 0 0 1 0 2 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 10 0 1119.523 P13797;A0A0A0MSQ0;H7C4N2 P13797 337 346 PLS3 Plastin-3 yes no 2 5.1551E-05 135.79 By MS/MS By MS/MS By MS/MS 2 3 1 1.0835 0.98712 29.542 6 Median 0.81202 0.78168 38.982 2 0 Median 1.1443 0.94624 28.696 3 0 Median 1.0589 1.094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176930000 80676000 96257000 43180000 21192000 21988000 126540000 56138000 70399000 7217300 3346400 3870900 0 0 0 0 0 0 0 0 0 872 1995 906 4178;4179;4180;4181;4182;4183 4273;4274;4275;4276;4277;4278;4279;4280 4278 8 AESPEEVACR AIAMSLGQDIPMDQRAESPEEVACRKEEEE PMDQRAESPEEVACRKEEEERKAREKQEEE R A E C R K 2 1 0 0 1 0 3 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1146.4975 Q7Z6Z7 Q7Z6Z7 1393 1402 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.0087066 46.158 By MS/MS 1 0.8109 0.68991 NaN 1 Median NaN NaN NaN 0 0 Median 0.8109 0.68991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186000 727580 458390 0 0 0 1186000 727580 458390 0 0 0 0 0 0 0 0 0 0 0 0 873 3253 907 4184 4281 4281 1 AESSDGIHIILK QNFQDESCFLFSTVKAESSDGIHIILK___ TVKAESSDGIHIILK_______________ K A E L K - 1 0 0 1 0 0 1 1 1 3 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1281.6929 Q9NZI7 Q9NZI7 529 540 UBP1 Upstream-binding protein 1 yes yes 2;3 0.0033078 46.462 By MS/MS By matching 2 2 1.0461 1.0298 12.9 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0461 1.0563 4.2156 2 0 Median 1.063 0.91807 16.872 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10726000 4992700 5733800 0 0 0 0 0 0 8969900 4219500 4750400 1756600 773220 983390 0 0 0 0 0 0 874 4187 908 4185;4186;4187;4188 4282;4283;4284 4284 3 AESSDKLYR ______________________________ ______________________________ M A E Y R V 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 9 1 1067.5247 P09874;Q5VX84;Q5VX85 P09874 2 10 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.00018576 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 4 1.1193 1.065 15.215 12 Median 0.99969 1.04 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0138 1.0615 10.536 3 0 Plateau 1.1633 1.1163 8.2161 4 0 Median NaN NaN NaN 0 0 Median 1.1822 1.0351 25.534 4 0 Median 106570000 50594000 55972000 3971900 1992900 1979000 0 0 0 78964000 37862000 41102000 10823000 5100700 5722000 0 0 0 12808000 5638700 7169200 875 1922 909 4189;4190;4191;4192;4193;4194;4195;4196;4197;4198;4199;4200;4201 4285;4286;4287;4288;4289;4290;4291;4292;4293;4294;4295;4296;4297;4298;4299;4300;4301;4302 4286 18 AESSDKLYRVEYAK ______________________________ MAESSDKLYRVEYAKSGRASCKKCSESIPK M A E A K S 2 1 0 1 0 0 2 0 0 0 1 2 0 0 0 2 0 0 2 1 0 0 14 2 1657.8312 P09874;Q5VX84;Q5VX85 P09874 2 15 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3 1.9279E-05 84.468 By MS/MS 1 1.1242 1.281 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1242 1.281 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35581000 17028000 18553000 0 0 0 0 0 0 35581000 17028000 18553000 0 0 0 0 0 0 0 0 0 876 1922 910 4202 4303 4303 1 AESSESFTMASSPAQR ______________________________ ESSESFTMASSPAQRRRGNDPLTSSPGRSS M A E Q R R 3 1 0 0 0 1 2 0 0 0 0 0 1 1 1 5 1 0 0 0 0 0 16 0 1684.7363 P49736;F8WDM3 P49736 2 17 MCM2 DNA replication licensing factor MCM2 yes no 2 3.7945E-14 172.11 By MS/MS By matching 1 1 0.81297 0.83622 1.2908 2 Median 0.86002 0.82862 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76851 0.84389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14348000 7400200 6947900 11238000 5642100 5595700 0 0 0 3110400 1758200 1352200 0 0 0 0 0 0 0 0 0 877 2393 911 4203;4204 4304;4305 4305 2 AESTPEIAEQR VYLQNWSHVLSYVSKAESTPEIAEQRGERD YVSKAESTPEIAEQRGERDSQTQAILTKLK K A E Q R G 2 1 0 0 0 1 3 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 11 0 1229.5888 C9JFE4;Q13098 C9JFE4 205 215 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.00018241 77.662 By MS/MS By MS/MS By matching 1 1 1 0.99325 0.88207 5.4307 3 Median 0.88775 0.88207 NaN 1 0 Median 0.99325 0.85619 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0871 0.95131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6270400 3130300 3140100 3801300 1888700 1912600 2164100 1098500 1065600 0 0 0 304970 143100 161870 0 0 0 0 0 0 878 695 912 4205;4206;4207 4306;4307;4308;4309 4309 4 AESVVLEHR DKPVQDRGLVVTDLKAESVVLEHRSYCSAK VVTDLKAESVVLEHRSYCSAKARDRHFAGD K A E H R S 1 1 0 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 1038.5458 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0;E9PKF1 Q9BWS9 57 65 CHID1 Chitinase domain-containing protein 1 yes no 2 0.0025104 71.501 By MS/MS By MS/MS By MS/MS 1 1 1 1.2543 1.1878 4.7448 3 Plateau NaN NaN NaN 0 0 Median 1.3473 1.1618 NaN 1 0 Median 1.0952 1.1878 NaN 1 0 Median 1.2543 1.0845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3496500 1601700 1894800 0 0 0 1005300 441760 563500 1958400 907570 1050800 532790 252380 280410 0 0 0 0 0 0 879 3874 913 4208;4209;4210 4310;4311;4312;4313;4314 4314 5 AETECQNTEYQQLLDIK QAQISALEEQLQQIRAETECQNTEYQQLLD TECQNTEYQQLLDIKIRLENEIQTYRSLLE R A E I K I 1 0 1 1 1 3 3 0 0 1 2 1 0 0 0 0 2 0 1 0 0 0 17 0 2081.9575 P13645;CON__P13645 P13645 423 439 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.3206E-18 127.37 By MS/MS By MS/MS By MS/MS 1 3 5 0.47965 0.51588 76.01 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47965 0.51588 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.33245 0.32944 101.07 2 2 Median NaN NaN NaN 0 0 Median 65957000 64590000 1366600 6132300 6132300 0 0 0 0 28263000 27562000 700750 0 0 0 31562000 30896000 665880 0 0 0 + 880 756 914 4211;4212;4213;4214;4215;4216;4217;4218;4219 4315;4316;4317;4318;4319;4320;4321;4322;4323 4316 9 AETEEGPDVLR QEAAAILMARLAIYRAETEEGPDVLRWLDR AIYRAETEEGPDVLRWLDRQLIRLCQKFGE R A E L R W 1 1 0 1 0 0 3 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1214.5779 F5H365;Q15436 F5H365 505 515 SEC23A Protein transport protein Sec23A yes no 2 0.00014501 108.98 By MS/MS By MS/MS By MS/MS 2 1 2 0.96862 0.83473 191.29 5 Median 0.17361 0.16162 206.81 2 1 Median 1.0044 0.87179 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6819 2.5974 160.54 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28119000 17581000 10538000 20592000 14397000 6194700 2392400 1173100 1219300 0 0 0 5134700 2010700 3124000 0 0 0 0 0 0 881 1029 915 4220;4221;4222;4223;4224 4324;4325;4326;4327 4326 4 AETLEFNDVYQEVK ______________________________ MAETLEFNDVYQEVKGSMNDGRLRLSRQGI M A E V K G 1 0 1 1 0 1 3 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 14 0 1683.7992 Q08945 Q08945 2 15 SSRP1 FACT complex subunit SSRP1 yes yes 2 9.1116E-08 113.47 By MS/MS By MS/MS By MS/MS 1 7 2 1.2249 1.2518 25.461 10 Median 0.81749 0.76252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2401 1.2936 18.387 7 0 Median 1.2791 1.0535 20.138 2 0 Median 53743000 23923000 29820000 5733900 2909000 2824900 0 0 0 0 0 0 0 0 0 41641000 18189000 23452000 6368200 2824700 3543500 882 2743 916 4225;4226;4227;4228;4229;4230;4231;4232;4233;4234 4328;4329;4330;4331;4332;4333;4334;4335 4328 8 AETLMTVTDPVHDIAFAPNLGR VQIFEYNENTRKYAKAETLMTVTDPVHDIA TDPVHDIAFAPNLGRSFHILAIATKDVRIF K A E G R S 3 1 1 2 0 0 1 1 1 1 2 0 1 1 2 0 3 0 0 2 0 0 22 0 2367.1893 Q96EE3;K7ELV2 Q96EE3 212 233 SEH1L Nucleoporin SEH1 yes no 3 2.855E-12 65.521 By MS/MS By MS/MS 4 1 0.80862 0.80067 15.402 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77911 0.76523 16.669 4 0 Median 0.96527 0.84666 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37551000 19806000 17745000 0 0 0 0 0 0 35638000 19075000 16562000 1913500 730890 1182600 0 0 0 0 0 0 883 3634 917;918 4235;4236;4237;4238;4239 4336;4337;4338;4339;4340;4341 4339 1795 6 AETLPGSGDSGPGTASLGPGVAETGTR ______________________________ GTASLGPGVAETGTRRLSELRVIDLRAELK M A E T R R 3 1 0 1 0 0 2 7 0 0 2 0 0 0 3 3 4 0 0 1 0 0 27 0 2441.167 Q14151 Q14151 2 28 SAFB2 Scaffold attachment factor B2 yes yes 3 1.161E-13 59.189 By MS/MS 1 0.53282 0.54977 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53282 0.54977 NaN 1 0 Median NaN NaN NaN 0 0 Median 8533000 5375700 3157300 0 0 0 0 0 0 0 0 0 0 0 0 8533000 5375700 3157300 0 0 0 884 2859 919 4240 4342;4343 4342 2 AETLPGSGDSGPGTASLGPGVAETGTRR ______________________________ TASLGPGVAETGTRRLSELRVIDLRAELKK M A E R R L 3 2 0 1 0 0 2 7 0 0 2 0 0 0 3 3 4 0 0 1 0 0 28 1 2597.2681 Q14151 Q14151 2 29 SAFB2 Scaffold attachment factor B2 yes yes 3 1.7185E-09 48.867 By MS/MS 1 0.55808 0.60372 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55808 0.60372 NaN 1 0 Median NaN NaN NaN 0 0 Median 9606500 5734900 3871600 0 0 0 0 0 0 0 0 0 0 0 0 9606500 5734900 3871600 0 0 0 885 2859 920 4241 4344 4344 1 AETLSGLGDSGAAGAAALSSASSETGTR ______________________________ GAAALSSASSETGTRRLSDLRVIDLRAELR M A E T R R 7 1 0 1 0 0 2 5 0 0 3 0 0 0 0 6 3 0 0 0 0 0 28 0 2494.1783 Q15424;K7ES42 Q15424 2 29 SAFB Scaffold attachment factor B1 yes no 3 2.5351E-36 88.517 By MS/MS By MS/MS 1 3 0.91094 0.91701 25.744 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2444 1.3604 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.84862 0.82186 14.96 3 0 Median NaN NaN NaN 0 0 Median 14844000 8118300 6725400 0 0 0 0 0 0 2142900 898430 1244500 0 0 0 12701000 7219800 5480900 0 0 0 886 2951 921 4242;4243;4244;4245 4345;4346;4347;4348;4349 4347 5 AETLSGLGDSGAAGAAALSSASSETGTRR ______________________________ AAALSSASSETGTRRLSDLRVIDLRAELRK M A E R R L 7 2 0 1 0 0 2 5 0 0 3 0 0 0 0 6 3 0 0 0 0 0 29 1 2650.2794 Q15424;K7ES42 Q15424 2 30 SAFB Scaffold attachment factor B1 yes no 3 1.9064E-46 116.08 By MS/MS By MS/MS By matching 1 6 1 1.1104 1.2259 15.635 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.23 1.496 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0402 1.1469 15.255 6 0 Median 1.4163 1.2803 NaN 1 0 Median 64981000 30803000 34179000 0 0 0 0 0 0 9849200 3889400 5959800 0 0 0 54852000 26800000 28051000 280480 112640 167840 887 2951 922 4246;4247;4248;4249;4250;4251;4252;4253 4350;4351;4352;4353;4354;4355;4356 4352 7 AETNDSYHIILK QNFQEEACFILDTMKAETNDSYHIILK___ TMKAETNDSYHIILK_______________ K A E L K - 1 0 1 1 0 0 1 0 1 2 1 1 0 0 0 1 1 0 1 0 0 0 12 0 1402.7092 Q12800;F8VX55 Q12800 491 502 TFCP2 Alpha-globin transcription factor CP2 yes no 2;3 0.00033447 70.1 By MS/MS By MS/MS 2 2 1.0726 1.0683 5.6535 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.054 1.0308 0.98662 2 0 Median 1.1166 0.95501 6.0437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36530000 16354000 20176000 0 0 0 0 0 0 29616000 13331000 16285000 6913400 3023300 3890200 0 0 0 0 0 0 888 2760 923 4254;4255;4256;4257 4357;4358;4359;4360;4361;4362 4362 6 AETPTAAEDDNEGDKK KVTVDTGVIPASEEKAETPTAAEDDNEGDK ETPTAAEDDNEGDKKKKDKKKKKGEKEEKE K A E K K K 3 0 1 3 0 0 3 1 0 0 0 2 0 0 1 0 2 0 0 0 0 0 16 1 1689.733 A0A087WUT6;O60841 A0A087WUT6 299 314 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.043832 11.375 By matching By MS/MS By MS/MS 1 1 2 0.81017 0.78313 8.9395 4 Median 0.73624 0.78982 NaN 1 0 Median 0.80522 0.755 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8978 0.84588 12.106 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2377200 1190100 1187100 141600 71364 70241 1334500 690660 643830 0 0 0 901140 428070 473070 0 0 0 0 0 0 889 35 924 4258;4259;4260;4261 4363;4364;4365 4364 3 AETVADTRR ______________________________ ______________________________ M A E R R L 2 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 9 1 1017.5203 O60493 O60493 2 10 SNX3 Sorting nexin-3 yes yes 2 0.0020502 67.169 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1534 1.0423 12.825 4 Median 0.99406 1.0419 NaN 1 0 Median 1.0801 0.9881 NaN 1 0 Median 1.2699 1.3167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2317 1.0426 NaN 1 0 Median 10222000 4838000 5383800 3610200 1834000 1776200 1580300 800960 779390 4886600 2141100 2745500 0 0 0 0 0 0 144660 61900 82757 890 1616 925 4262;4263;4264;4265 4366;4367 4366 2 AEVADEKLHVTVR CGMDHTEKRGRIYLKAEVADEKLHVTVRDA LKAEVADEKLHVTVRDAKNLIPMDPNGLSD K A E V R D 2 1 0 1 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 3 0 0 13 1 1465.7889 P17252;J3KRN5 P17252 166 178 PRKCA Protein kinase C alpha type yes no 3 0.0077812 28.632 By MS/MS 1 0.83557 0.85294 NaN 1 Median 0.83557 0.85294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1795600 957150 838490 1795600 957150 838490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 891 2039 926 4266 4368 4368 1 AEVDDVIQVR GEYEEHLGILGPVIRAEVDDVIQVRFKNLA GPVIRAEVDDVIQVRFKNLASRPYSLHAHG R A E V R F 1 1 0 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 10 0 1142.5932 CON__Q28107;A0A0A0MRJ7;P12259 CON__Q28107 1637 1646 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 0.0018447 79.906 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5875400 5875400 0 0 0 0 0 0 0 0 0 0 5875400 5875400 0 0 0 0 0 0 0 + 892 772 927 4267 4369 4369 1 AEVDMDTDAPQVSHKPGGEPK LRAWTQVLLGQAEDKAEVDMDTDAPQVSHK TDAPQVSHKPGGEPKIKNVVHELRITNQVI K A E P K I 2 0 0 3 0 1 2 2 1 0 0 2 1 0 3 1 1 0 0 2 0 0 21 1 2207.0165 Q14204 Q14204 934 954 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 7.6534E-10 61.703 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.65652 0.68456 6.4038 7 Median 0.63062 0.68402 5.9698 2 1 Median 0.75078 0.71628 1.8432 2 0 Median 0.59362 0.67485 NaN 1 0 Median 0.6315 0.64157 9.1724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32477000 18367000 14110000 7614400 4374100 3240300 19248000 10715000 8533300 2280000 1308900 971100 3334500 1969100 1365400 0 0 0 0 0 0 893 2865 928 4268;4269;4270;4271;4272;4273;4274 4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380 4375 11 AEVEETLKR ______________________________ ______________________________ M A E K R L 1 1 0 0 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 1 1073.5717 Q9NP97;Q8TF09 Q9NP97 2 10 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 no no 2 0.00059997 103.56 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1.1843 1.0618 7.0868 6 Median 1.0182 0.99846 NaN 1 0 Median 1.2056 1.0429 NaN 1 0 Median 1.0718 1.1092 NaN 1 0 Median 1.2522 1.1186 4.8251 2 0 Median NaN NaN NaN 0 0 Median 1.1891 0.95336 NaN 1 0 Median 37689000 17240000 20449000 9484600 5013300 4471300 3185900 1385000 1801000 19440000 8420200 11020000 4764300 2057700 2706600 0 0 0 814230 363490 450740 894 3482 929 4275;4276;4277;4278;4279;4280;4281 4381;4382;4383;4384;4385;4386;4387 4383 7 AEVEGKDLPEHAVLK VCPKDEDYKQRTQKKAEVEGKDLPEHAVLK AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K A E L K M 2 0 0 1 0 0 3 1 1 0 2 2 0 0 1 0 0 0 0 2 0 0 15 1 1633.8675 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 621 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3;4 0.0004587 39.629 By MS/MS By MS/MS By MS/MS 1 6 3 0.86407 0.90825 17.405 10 Median 0.91195 0.96168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82212 0.88936 9.5834 6 0 Median 1.1002 0.98054 29.352 3 0 Median 77200000 40155000 37045000 3475300 1357400 2117800 0 0 0 0 0 0 0 0 0 67272000 35562000 31710000 6453200 3236000 3217200 895 2680 930 4282;4283;4284;4285;4286;4287;4288;4289;4290;4291 4388;4389;4390;4391;4392;4393;4394;4395 4388 8 AEVGEDSGAR ______________________________ ______________________________ M A E A R A 2 1 0 1 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 10 0 989.4414 P85037 P85037 2 11 FOXK1 Forkhead box protein K1 yes yes 2 0.008916 46.158 By MS/MS 1 0.87259 0.93544 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87259 0.93544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1575500 835020 740460 0 0 0 0 0 0 1575500 835020 740460 0 0 0 0 0 0 0 0 0 896 2669 931 4292 4396 4396 1 AEVIMNYHVGETVLSLQK KALWDRGLLNGASQKAEVIMNYHVGETVLS IMNYHVGETVLSLQKTTLIPGGSESLVYTT K A E Q K T 1 0 1 0 0 1 2 1 1 1 2 1 1 0 0 1 1 0 1 3 0 0 18 0 2030.0507 Q15393 Q15393 1089 1106 SF3B3 Splicing factor 3B subunit 3 yes yes 3 0.0307 13.832 By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 3 2 1.1278 1.001 28.595 10 Median 0.58055 0.55568 NaN 1 0 Median 0.93381 0.80887 NaN 1 0 Median 0.88948 0.96289 NaN 1 0 Median 1.3019 1.1389 23.512 2 0 Median 1.1938 1.2581 29.888 3 0 Median 1.384 1.1277 11.593 2 0 Median 13593000 7483300 6110000 2947400 1913800 1033700 518930 237390 281530 3005800 1631500 1374300 663710 264890 398820 5606200 3082200 2524000 851200 353500 497700 897 2946 932 4293;4294;4295;4296;4297;4298;4299;4300;4301;4302 4397 4397 1 AEVKFEGDTLVNR ERTIFYKDDGNYKTRAEVKFEGDTLVNRIE TRAEVKFEGDTLVNRIELKGIDFKEDGNIL R A E N R I 1 1 1 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 0 2 0 0 13 1 1476.7573 CON__Q9U6Y5;P37840 P37840 250 262 SNCA Alpha-synuclein no no 2;3 1.5862E-79 221.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 12 14 9 13 10 1.3302 1.3288 88.944 74 Median 1.132 1.1629 30.28 18 0 Median 1.182 1.0633 10.578 12 0 Median 1.4036 1.5728 28.103 13 2 Median 1.8092 1.5682 56.166 8 2 Median 140.36 168.02 149.15 13 5 Linear 4.3077 3.7765 56.101 10 1 Median 5506300000 2198900000 3307400000 3772300000 1691700000 2080600000 368270000 164060000 204210000 372000000 140260000 231740000 405680000 123730000 281950000 451200000 54295000 396900000 136920000 24908000 112010000 + 898 2271;795 933 4303;4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318;4319;4320;4321;4322;4323;4324;4325;4326;4327;4328;4329;4330;4331;4332;4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346;4347;4348;4349;4350;4351;4352;4353;4354;4355;4356;4357;4358;4359;4360;4361;4362;4363;4364;4365;4366;4367;4368;4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380 4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422;4423;4424;4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469;4470;4471;4472;4473;4474;4475;4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493;4494;4495;4496;4497;4498;4499;4500;4501;4502;4503;4504;4505;4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525 4425 126 AEVKFEGDTLVNRIELK ERTIFYKDDGNYKTRAEVKFEGDTLVNRIE VKFEGDTLVNRIELKGIDFKEDGNILGHKM R A E L K G 1 1 1 1 0 0 3 1 0 1 2 2 0 1 0 0 1 0 0 2 0 0 17 2 1960.0629 CON__Q9U6Y5;P37840 P37840 250 266 SNCA Alpha-synuclein no no 3;4 0.00014178 43.297 By MS/MS By matching By matching 5 1 1 1.1435 1.2176 72.427 7 Median 1.1435 1.2176 14.056 5 0 Median 0.61125 0.52997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.3696 5.9333 NaN 1 0 Median 32507000 14131000 18377000 30715000 13417000 17298000 749630 507730 241900 0 0 0 0 0 0 0 0 0 1043100 206440 836690 + 899 2271;795 934 4381;4382;4383;4384;4385;4386;4387 4526;4527;4528;4529;4530;4531 4531 6 AEVLSEEPILK HFMKAFQKIVVLFYKAEVLSEEPILKWYKD LFYKAEVLSEEPILKWYKDAHVAKGKSVFL K A E L K W 1 0 0 0 0 0 3 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 11 0 1226.6758 Q7L1Q6 Q7L1Q6 369 379 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes yes 2 0.00014249 107.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 0.94302 0.83668 22.044 6 Median 1.0453 0.98238 21.62 2 0 Median 0.97481 0.83029 NaN 1 0 Median 0.79979 0.82697 NaN 1 0 Median 0.81531 0.71046 30.185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65532000 31370000 34163000 19302000 9750100 9552400 27264000 12280000 14984000 9715500 4395100 5320400 9250800 4944600 4306200 0 0 0 0 0 0 900 3219 935 4388;4389;4390;4391;4392;4393 4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542 4535 11 AEVLSFILEDVR KILASLVTQFNSGLKAEVLSFILEDVRARL GLKAEVLSFILEDVRARLDLAFAWLYQEYN K A E V R A 1 1 0 1 0 0 2 0 0 1 2 0 0 1 0 1 0 0 0 2 0 0 12 0 1389.7504 Q92797;A0A087WUE9;M0R3C7 Q92797 602 613 SYMPK Symplekin yes no 2 0.035818 45.997 By MS/MS 1 0.9877 1.0675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9877 1.0675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1155100 545030 610120 0 0 0 0 0 0 1155100 545030 610120 0 0 0 0 0 0 0 0 0 901 3558 936 4394 4543 4543 1 AEVLWLMGAK SLEALLQRAVAHCPKAEVLWLMGAKSKWLA AHCPKAEVLWLMGAKSKWLAGDVPAARSIL K A E A K S 2 0 0 0 0 0 1 1 0 0 2 1 1 0 0 0 0 1 0 1 0 0 10 0 1116.6002 O94906 O94906 607 616 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0048213 51.854 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.0354 0.97155 26.304 6 Median 1.5466 1.5343 NaN 1 0 Median 1.0705 0.91692 NaN 1 0 Median 1.0015 1.1057 NaN 1 0 Median 1.219 1.0294 NaN 1 0 Median 0.8129 0.83847 NaN 1 0 Median 0.83141 0.71399 NaN 1 0 Median 11084000 5403500 5680700 2505900 984080 1521800 1034600 550590 483970 4573700 2244100 2329600 578160 276280 301890 2221300 1251500 969810 170560 96956 73607 902 1735 937 4395;4396;4397;4398;4399;4400 4544;4545;4546;4547 4546 4 AEVPGATGGDSPHLQPAEPPGEPR ______________________________ DSPHLQPAEPPGEPRREPHPAEAEKQQPQH K A E P R R 3 1 0 1 0 1 3 4 1 0 1 0 0 0 6 1 1 0 0 1 0 0 24 0 2365.1299 A0A0A0MQW0;A0A0A0MR39;Q9P2K5;A0A087WWC8 A0A0A0MQW0 7 30 MYEF2 Myelin expression factor 2 yes no 3 6.4072E-08 43.162 By MS/MS 1 0.20639 0.2059 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20639 0.2059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14376000 11690000 2685900 0 0 0 0 0 0 14376000 11690000 2685900 0 0 0 0 0 0 0 0 0 903 149 938 4401 4548 4548 1 AEVQHQLHVAVGSLQESILAQVQR SATEQMAATVAGSVRAEVQHQLHVAVGSLQ AVGSLQESILAQVQRIVKGEVSVALKEQQA R A E Q R I 3 1 0 0 0 5 2 1 2 1 3 0 0 0 0 2 0 0 0 4 0 0 24 0 2639.4143 Q6P2E9;I3L3M2 Q6P2E9 1198 1221 EDC4 Enhancer of mRNA-decapping protein 4 yes no 4 0.059431 6.8749 By MS/MS 2 1.0612 0.90835 16.128 2 Median NaN NaN NaN 0 0 Median 1.0612 0.90835 16.128 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4852400 2405000 2447400 0 0 0 4852400 2405000 2447400 0 0 0 0 0 0 0 0 0 0 0 0 904 3155 939 4402;4403 4549;4550 4549 2 AEVQVLVLDGR ______________________________ ______________________________ M A E G R G 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 11 0 1197.6717 P40429;M0QZU1;A0A096LPE0 P40429 2 12 RPL13A 60S ribosomal protein L13a yes no 2 0.00015706 82.749 By MS/MS By matching By MS/MS By matching 2 3 1 2 1.3478 1.2504 37.711 8 Median 1.2809 1.2504 4.9813 2 0 Median 1.2962 1.1038 63.347 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4627 1.4718 NaN 1 0 Median 1.5 1.1862 14.05 2 0 Median 22342000 9206700 13135000 4687100 2073900 2613200 2219700 965900 1253800 0 0 0 0 0 0 13604000 5533800 8070500 1830800 633070 1197700 905 2288 940 4404;4405;4406;4407;4408;4409;4410;4411 4551;4552;4553 4551 3 AEVTHWYENLQK MTIEMYPSDQVADLRAEVTHWYENLQKEQI DLRAEVTHWYENLQKEQINQQAQLQEFGQS R A E Q K E 1 0 1 0 0 1 2 0 1 0 1 1 0 0 0 0 1 1 1 1 0 0 12 0 1516.731 Q70CQ2 Q70CQ2 1239 1250 USP34 Ubiquitin carboxyl-terminal hydrolase 34 yes yes 3 0.063911 12.058 By MS/MS By matching 1 1 0.96481 0.89948 2.6274 2 Median 0.92306 0.91635 NaN 1 0 Median 1.0084 0.88293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5505700 2539700 2966000 3518500 1478700 2039800 1987200 1061000 926210 0 0 0 0 0 0 0 0 0 0 0 0 906 3207 941 4412;4413 4554 4554 1 AEVTMGDPHQQTLAR SLEEFYKEAPPDISKAEVTMGDPHQQTLAR AEVTMGDPHQQTLARLDWELEQRKRLAEKY K A E A R L 2 1 0 1 0 2 1 1 1 0 1 0 1 0 1 0 2 0 0 1 0 0 15 0 1652.7941 Q13769;F8WCP5;C9JXG5;H7C072;H7C441 Q13769 176 190 THOC5 THO complex subunit 5 homolog yes no 2;3 1.4201E-13 133.05 By MS/MS By MS/MS 4 3 0.80627 0.81742 7.1359 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79509 0.81923 0.96647 3 1 Median 0.91208 0.78597 9.6922 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54225000 29739000 24486000 0 0 0 0 0 0 41809000 23556000 18254000 12415000 6183500 6231900 0 0 0 0 0 0 907 2837 942;943 4414;4415;4416;4417;4418;4419;4420 4555;4556;4557;4558;4559;4560;4561;4562;4563;4564 4563 1521 10 AEVVDEIAAK QIGTQNSLELLEDPKAEVVDEIAAKLGLRK LEDPKAEVVDEIAAKLGLRKVGWIFTDLVS K A E A K L 3 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 0 1043.5499 Q8TAT6 Q8TAT6 293 302 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.0056602 65.305 By MS/MS By MS/MS By MS/MS 2 1 1 0.39823 0.33779 131.3 2 Median NaN NaN NaN 0 0 Median 1.0106 0.85476 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.15693 0.13349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10017000 7551900 2465000 0 0 0 5892900 4089800 1803100 0 0 0 4124000 3462100 661920 0 0 0 0 0 0 908 3456 944 4421;4422;4423;4424 4565;4566;4567;4568 4566 4 AEVVETTQVYTEEETRR PETGLRLLPLKGAEKAEVVETTQVYTEEET VVETTQVYTEEETRRAFEETQIDIPGGGSH K A E R R A 1 2 0 0 0 1 5 0 0 0 0 0 0 0 0 0 4 0 1 3 0 0 17 1 2038.9807 Q15149;H0YDN1 Q15149 3686 3702 PLEC Plectin yes no 2;3 9.0367E-14 122.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 1.2059 1.2834 9.2088 11 Median 1.1981 1.302 9.3618 3 0 Median 1.3424 1.306 5.4334 2 0 Median 1.1627 1.2778 5.1565 2 0 Median 1.4213 1.3245 NaN 1 0 Median 1.0167 1.1022 2.107 2 0 Median 1.3392 1.2106 NaN 1 0 Median 107030000 47472000 59560000 44186000 19805000 24380000 23749000 10147000 13601000 19583000 8524100 11059000 3076200 1332600 1743600 13413000 6518200 6895000 3025800 1144800 1881000 909 2933 945 4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435 4569;4570;4571;4572;4573;4574;4575;4576;4577;4578;4579;4580;4581;4582;4583;4584;4585 4578 17 AEVVLGNIIK GINLFDTAEVYAAGKAEVVLGNIIKKKGWR YAAGKAEVVLGNIIKKKGWRRSSLVITTKI K A E I K K 1 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1054.6386 A0A590UJB6;Q13303;A0A590UJJ4;A0A590UJB8;A0A590UJV4;Q5TG78;A0A590UK89;A0A590UJY1;Q5TG81;A0A590UJU1;Q5TG84;A0A590UJU4;K7EIR5;K7EKU4;Q5TG80 A0A590UJB6 126 135 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 2 0.0016573 63.565 By matching By matching By MS/MS 1 1 1 1.0304 0.9445 9.8739 3 Median 1.0929 1.1049 NaN 1 0 Median 1.0304 0.92072 NaN 1 0 Median 0.98736 0.9445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5814300 2813800 3000400 1098400 534740 563620 1140800 515510 625240 3575200 1763600 1811600 0 0 0 0 0 0 0 0 0 910 484 946 4436;4437;4438 4586 4586 1 AEVWDLDMLR CEESSPTVALLHEDRAEVWDLDMLRSSHST LHEDRAEVWDLDMLRSSHSTWPVDVSQIKQ R A E L R S 1 1 0 2 0 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 10 0 1246.6016 Q6P2E9 Q6P2E9 264 273 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.01267 41.029 By MS/MS By matching By MS/MS 1 1 1 1.1926 1.0454 19.285 3 Median 1.1926 1.1969 NaN 1 1 Median 1.2112 1.0454 NaN 1 0 Median 0.75632 0.81816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3087600 1513000 1574600 1178400 539350 639090 701090 298710 402390 1208000 674930 533100 0 0 0 0 0 0 0 0 0 911 3155 947 4439;4440;4441 4587;4588 4588 2 AEWEPPEAR SWAVQPHYQLPTAFRAEWEPPEARAPSATP LPTAFRAEWEPPEARAPSATPRPLHLGFLC R A E A R A 2 1 0 0 0 0 3 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 9 0 1083.4985 Q8IYS1 Q8IYS1 89 97 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 2 0.0049104 59.245 By MS/MS By MS/MS By matching 1 1 1 0.74165 0.63392 41.982 3 Median NaN NaN NaN 0 0 Median 0.74165 0.63392 NaN 1 0 Median 0.49562 0.4974 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95588 1.1264 NaN 1 0 Median NaN NaN NaN 0 0 Median 8387000 4616700 3770300 0 0 0 3136200 1910400 1225800 4431100 2318600 2112500 0 0 0 819740 387710 432030 0 0 0 912 3345 948 4442;4443;4444 4589;4590 4589 2 AEWLLAVR GVRWAFSCGTWLPSRAEWLLAVRSIQPEEK GTWLPSRAEWLLAVRSIQPEEKERIGQFVF R A E V R S 2 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 8 0 956.54435 Q9NRN7 Q9NRN7 31 38 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes yes 2 0.033626 38.238 By matching By MS/MS By matching By matching 1 1 1 1 1.1236 1.1114 19.42 4 Median 1.0049 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2563 1.2102 NaN 1 0 Median 1.4534 1.2237 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92576 0.80787 NaN 1 0 Median 2621600 1175500 1446100 309630 149970 159660 0 0 0 1635400 719030 916330 117890 47139 70746 0 0 0 558710 259320 299390 913 4085 949 4445;4446;4447;4448 4591 4591 1 AEWQVYK ELPDSKKKIYQDAYRAEWQVYKEEISRFKE KIYQDAYRAEWQVYKEEISRFKEQLTPSQI R A E Y K E 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 7 0 922.45487 Q00059;H7BYN3 Q00059 105 111 TFAM Transcription factor A, mitochondrial yes no 2 0.040961 44.611 By matching By matching By MS/MS 1 1 1 1.0118 0.99463 8.9818 3 Median 1.0118 0.99463 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94806 0.89288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2916 1.0672 NaN 1 0 Median 17254000 8124800 9129300 3878800 2012300 1866500 0 0 0 6024300 2859800 3164500 0 0 0 0 0 0 7351000 3252700 4098300 914 2673 950 4449;4450;4451 4592 4592 1 AEWQVYKEEISR ELPDSKKKIYQDAYRAEWQVYKEEISRFKE AYRAEWQVYKEEISRFKEQLTPSQIMSLEK R A E S R F 1 1 0 0 0 1 3 0 0 1 0 1 0 0 0 1 0 1 1 1 0 0 12 1 1536.7573 Q00059;H7BYN3 Q00059 105 116 TFAM Transcription factor A, mitochondrial yes no 2;3 1.2339E-06 154.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 2 3 4 1.0544 1.0847 23.596 18 Median 0.98468 1.0263 7.8327 2 0 Median 0.95199 0.88537 21.624 2 0 Median 1.0511 1.1095 30.832 5 0 Median 1.2761 1.1296 6.3778 2 0 Median 1.0238 1.0847 33.491 3 0 Median 1.1579 1.0156 14.366 4 0 Median 275880000 128660000 147220000 48418000 23110000 25309000 8711200 4455700 4255500 103830000 47831000 55998000 34913000 15442000 19471000 42284000 21050000 21234000 37724000 16772000 20951000 915 2673 951 4452;4453;4454;4455;4456;4457;4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469 4593;4594;4595;4596;4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609 4598 17 AEYDLTTR ______________________________ ______________________________ M A E T R I 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 1 0 0 0 8 0 967.46108 P60228;E5RHS5;E5RIP5;E5RJ25;E5RII3 P60228 2 9 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0056878 75.109 By MS/MS By matching By MS/MS 3 1 1 1.1315 1.0458 24.089 4 Median 1.0446 0.98135 27.22 3 0 Median 1.2938 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13615000 5678600 7936400 11398000 4763300 6635000 2216700 915320 1301400 0 0 0 0 0 0 0 0 0 0 0 0 916 2524 952 4470;4471;4472;4473;4474 4610;4611;4612 4611 3 AEYEGDGIPTVFVAVAGR VTSAHKGPDETLRIKAEYEGDGIPTVFVAV EGDGIPTVFVAVAGRSNGLGPVMSGNTAYP K A E G R S 3 1 0 1 0 0 2 3 0 1 0 0 0 1 1 0 1 0 1 3 0 0 18 0 1849.921 P22234;E9PBS1;D6RF62 P22234 314 331 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0015036 35.737 By MS/MS 2 1.164 1.0004 12.942 2 Median NaN NaN NaN 0 0 Median 1.164 1.0004 12.942 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5656600 2597000 3059700 0 0 0 5656600 2597000 3059700 0 0 0 0 0 0 0 0 0 0 0 0 917 909 953 4475;4476 4613;4614 4614 2 AEYISLAEHEAK EILKRNLENTQNQIKAEYISLAEHEAKMSS QIKAEYISLAEHEAKMSSLSQSMRKVQDSN K A E A K M 3 0 0 0 0 0 3 0 1 1 1 1 0 0 0 1 0 0 1 0 0 0 12 0 1359.667 F5H2B9;H0YNH8;Q9BZF9 F5H2B9 811 822 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.0011582 43.991 By matching By MS/MS By matching 1 1 2 1.1888 1.0381 41.921 4 Median 1.5071 1.4165 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51717 0.56068 NaN 1 0 Median 1.1888 1.0381 27.282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7885900 4111300 3774600 1455100 477880 977260 0 0 0 4141300 2621300 1520100 2289400 1012200 1277300 0 0 0 0 0 0 918 1026 954 4477;4478;4479;4480 4615 4615 1 AEYLASIFGTEK ______________________________ ______________________________ M A E E K D 2 0 0 0 0 0 2 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 12 0 1327.666 P0DN76;Q01081;K7EJH3;A0A1B0GW87;K7EJM7;M0QYK5;M0R2N4;Q8WU68 P0DN76 2 13 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 0.00060907 72.006 By matching By MS/MS By MS/MS By matching By MS/MS 2 5 2 2 2 1.1889 1.052 9.9776 13 Median 1.2111 1.1637 4.6982 2 0 Median NaN NaN NaN 0 0 Median 1.0883 1.1241 12.141 5 0 Median 1.2286 1.0073 1.995 2 0 Median 1.0002 1.0409 4.3094 2 0 Median 1.1994 1.0236 2.5898 2 0 Median 160230000 75361000 84874000 1075600 532270 543310 0 0 0 151540000 71324000 80217000 4190000 1874800 2315100 2253300 1107700 1145500 1174400 521470 652960 919 1930 955 4481;4482;4483;4484;4485;4486;4487;4488;4489;4490;4491;4492;4493 4616;4617;4618;4619;4620;4621 4620 6 AEYLASIFGTEKDK ______________________________ MAEYLASIFGTEKDKVNCSFYFKIGACRHG M A E D K V 2 0 0 1 0 0 2 1 0 1 1 2 0 1 0 1 1 0 1 0 0 0 14 1 1570.7879 P0DN76;Q01081;K7EJH3;A0A1B0GW87;K7EJM7;M0QYK5;M0R2N4;Q8WU68 P0DN76 2 15 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 3.5648E-08 100.55 By matching By MS/MS By MS/MS By matching By matching 1 3 1 1 1 1.1446 1.1026 20.373 7 Median NaN NaN NaN 0 0 Median 1.411 1.2716 NaN 1 0 Median 1.0923 1.1403 27.592 3 0 Median 1.2557 1.1026 NaN 1 0 Median 0.97513 0.9999 NaN 1 0 Median 1.1446 0.98195 NaN 1 0 Median 16800000 7424000 9375800 0 0 0 1708200 535050 1173100 13293000 6080600 7212000 896270 395080 501190 181930 87174 94753 720850 326120 394730 920 1930 956 4494;4495;4496;4497;4498;4499;4500 4622;4623;4624;4625 4623 4 AEYSYVK ______________________________ ______________________________ M A E V K S 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 2 1 0 0 7 0 858.41233 Q14331;E9PI42 Q14331 2 8 FRG1 Protein FRG1 yes no 1 0.0068783 52.683 By MS/MS 1 1.1069 0.93338 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1069 0.93338 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2559300 1128200 1431100 0 0 0 0 0 0 0 0 0 2559300 1128200 1431100 0 0 0 0 0 0 921 2874 957 4501 4626 4626 1 AEYWAVSSLTGENVR ALMEKDALQVAQEMKAEYWAVSSLTGENVR AEYWAVSSLTGENVREFFFRVAALTFEANV K A E V R E 2 1 1 0 0 0 2 1 0 0 1 0 0 0 0 2 1 1 1 2 0 0 15 0 1680.8107 J3QLC6;C9JBG0;C9JY26;Q9BZG1 J3QLC6 98 112 RAB34 Ras-related protein Rab-34 yes no 2 0.00016426 76.655 By MS/MS By matching 1 1 1.0043 0.90131 35.439 2 Median 0.74323 0.70152 NaN 1 0 Median 1.357 1.158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6052700 3178600 2874100 5234400 2873100 2361300 818350 305560 512790 0 0 0 0 0 0 0 0 0 0 0 0 922 687 958 4502;4503 4627;4628 4627 2 AFAAGADIK EDPAVGAIVLTGGDKAFAAGADIKEMQNLS LTGGDKAFAAGADIKEMQNLSFQDCYSSKF K A F I K E 4 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 9 0 862.45487 P30084 P30084 93 101 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.0029859 68.224 By MS/MS By MS/MS 2 1 0.98283 0.90942 18.887 3 Median 0.93866 0.88826 3.3303 2 0 Median 1.472 1.2289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47155000 22009000 25146000 31408000 15854000 15553000 15747000 6154500 9593000 0 0 0 0 0 0 0 0 0 0 0 0 923 2186 959 4504;4505;4506 4629;4630;4631;4632 4630 4 AFAAQEDLEK AKKKKEEEATEWQHKAFAAQEDLEKTKEEL EWQHKAFAAQEDLEKTKEELKTVMSAPPPP K A F E K T 3 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1120.5401 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 449 458 RDX Radixin yes no 2 0.00033827 109.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.1536 1.014 23.944 5 Median 0.8645 0.78546 NaN 1 0 Median 1.4492 1.2405 29.401 2 0 Median 1.113 1.1037 NaN 1 0 Median 1.173 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79922000 36602000 43320000 11026000 5769300 5256500 15773000 5023000 10750000 33483000 17014000 16469000 19641000 8796200 10844000 0 0 0 0 0 0 924 2235 960 4507;4508;4509;4510;4511;4512 4633;4634;4635;4636;4637;4638;4639;4640;4641;4642 4635 10 AFAAQEDLEKTKEELK AKKKKEEEATEWQHKAFAAQEDLEKTKEEL FAAQEDLEKTKEELKTVMSAPPPPPPPPVI K A F L K T 3 0 0 1 0 1 4 0 0 0 2 3 0 1 0 0 1 0 0 0 0 0 16 2 1848.9469 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 449 464 RDX Radixin yes no 4 0.0025246 28.956 By MS/MS 1 0.97908 0.95663 NaN 1 Median 0.97908 0.95663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6612800 3578300 3034500 6612800 3578300 3034500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 925 2235 961 4513 4643 4643 1 AFADAMEVIPSTLAENAGLNPISTVTELR EYSRTLSGMESYCVRAFADAMEVIPSTLAE ENAGLNPISTVTELRNRHAQGEKTAGINVR R A F L R N 5 1 2 1 0 0 3 1 0 2 3 0 1 1 2 2 3 0 0 2 0 0 29 0 3029.538 P50991 P50991 453 481 CCT4 T-complex protein 1 subunit delta yes yes 3 8.0835E-15 61.499 By MS/MS By MS/MS By MS/MS 1 1 2 0.78841 0.85153 19.063 4 Linear 0.78026 0.74131 NaN 1 0 Median 0.79665 0.67978 NaN 1 0 Median 0.75995 0.74498 32.084 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31561000 17063000 14498000 11870000 6210500 5659400 3437400 1921100 1516200 16254000 8931700 7322400 0 0 0 0 0 0 0 0 0 926 2424 962;963 4514;4515;4516;4517 4644;4645;4646;4647;4648 4648 1130 5 AFADLLVER HHDEALAVAERGRTRAFADLLVERQTGQQD ERGRTRAFADLLVERQTGQQDSDPYSPVTI R A F E R Q 2 1 0 1 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1032.5604 A0A087WW06;Q96AY4 A0A087WW06 1072 1080 TTC28 Tetratricopeptide repeat protein 28 yes no 2 0.015183 43.808 By MS/MS By matching By matching 2 2 1 1.3583 1.2843 28.305 5 Median 1.0253 1.0332 40.215 2 0 Median 1.6536 1.4676 18.863 2 0 Median 1.1794 1.2246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4774800 2005200 2769600 3256900 1407300 1849600 703340 230480 472860 814540 367370 447170 0 0 0 0 0 0 0 0 0 927 49 964 4518;4519;4520;4521;4522 4649 4649 1 AFAETHIK LLMSEDYFTQAMEVKAFAETHIKGFTLNDA TQAMEVKAFAETHIKGFTLNDAANSRLIIT K A F I K G 2 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 8 0 915.48142 P42704 P42704 1091 1098 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.004801 79.469 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.4158 1.2698 6.3406 6 Median 1.2435 1.2319 NaN 1 0 Median 1.4897 1.2533 NaN 1 0 Median 1.2064 1.2865 NaN 1 0 Median 1.609 1.3551 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4404 1.2274 11.176 2 0 Median 34568000 14012000 20556000 2775300 1246300 1529000 29690000 11926000 17764000 704500 334960 369540 649570 210000 439570 0 0 0 748900 295330 453560 928 2315 965 4523;4524;4525;4526;4527;4528 4650;4651;4652;4653 4653 4 AFAHITGGGLLENIPR YSHSLLPVLRSGHVKAFAHITGGGLLENIP FAHITGGGLLENIPRVLPEKLGVDLDAQTW K A F P R V 2 1 1 0 0 0 1 3 1 2 2 0 0 1 1 0 1 0 0 0 0 0 16 0 1664.8998 P22102 P22102 677 692 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 3 2.106E-05 75.669 By MS/MS By matching 1 1 0.86622 0.82326 11.59 2 Median 0.92734 0.89357 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80912 0.75848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11501000 5743800 5757300 10725000 5364000 5361200 0 0 0 775840 379740 396100 0 0 0 0 0 0 0 0 0 929 2098 966 4529;4530 4654;4655 4655 2 AFALEVIK KPENQFAFNGEFKNKAFALEVIKSTHQCWK NGEFKNKAFALEVIKSTHQCWKALLMKKCN K A F I K S 2 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 889.5273 Q9H2U2 Q9H2U2 262 269 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes yes 2 0.011256 57.281 By MS/MS By matching By matching By matching 2 1 1 1 1.2362 1.2019 24.809 5 Median 1.0232 0.94399 17.772 2 0 Median 1.7962 1.5136 NaN 1 0 Median 1.2362 1.2019 NaN 1 0 Median 1.759 1.4861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28000000 13294000 14706000 24098000 11802000 12296000 2390400 882780 1507600 1317000 540640 776370 194710 69081 125630 0 0 0 0 0 0 930 3947 967 4531;4532;4533;4534;4535 4656;4657 4656 2 AFAMIIDK ERIITLAGPTNAIFKAFAMIIDKLEEDISS PTNAIFKAFAMIIDKLEEDISSSMTNSTAA K A F D K L 2 0 0 1 0 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 8 0 907.48372 Q15365;H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;H3BND9;Q15366 Q15366 71 78 PCBP1;PCBP2 Poly(rC)-binding protein 1;Poly(rC)-binding protein 2 no no 2 0.0078694 65.252 By MS/MS 2 1.0577 1.0531 10.327 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0577 1.0531 10.327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16201000 8140500 8060300 0 0 0 0 0 0 16201000 8140500 8060300 0 0 0 0 0 0 0 0 0 931 2942;1077;2941 968 4536;4537 4658;4659;4660;4661 4659 4 AFAMIIDKLEEDINSSMTNSTAASRPPVTLR ERIITLTGPTNAIFKAFAMIIDKLEEDINS MTNSTAASRPPVTLRLVVPATQCGSLIGKG K A F L R L 4 2 2 2 0 0 2 0 0 3 2 1 2 1 2 4 3 0 0 1 0 0 31 2 3377.6959 Q15365 Q15365 71 101 PCBP1 Poly(rC)-binding protein 1 yes yes 4 0.050388 9.8828 By MS/MS 1 0.63025 0.69827 NaN 1 Median NaN NaN NaN 0 0 Median 0.63025 0.69827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3022600 1543800 1478800 0 0 0 3022600 1543800 1478800 0 0 0 0 0 0 0 0 0 0 0 0 932 2941 969 4538 4662 4662 1 AFAMIIDKLEEDISSSMTNSTAASRPPVTLR ERIITLAGPTNAIFKAFAMIIDKLEEDISS MTNSTAASRPPVTLRLVVPASQCGSLIGKG K A F L R L 4 2 1 2 0 0 2 0 0 3 2 1 2 1 2 5 3 0 0 1 0 0 31 2 3350.685 H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;H3BND9;Q15366 Q15366 71 101 PCBP2 Poly(rC)-binding protein 2 no no 3;4 6.0487E-56 130.64 By MS/MS 2 0.57834 0.64076 30.474 2 Median NaN NaN NaN 0 0 Median 0.57834 0.64076 30.474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17082000 9675500 7406200 0 0 0 17082000 9675500 7406200 0 0 0 0 0 0 0 0 0 0 0 0 933 2942;1077 970 4539;4540 4663;4664;4665 4665 3 AFANLRK ______________________________ ______________________________ M A F R K V 2 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 818.47627 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2;A0A286YF34;A0A286YFF3;A0A286YFK5 A0A286YF22 2 8 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0030964 99.511 By MS/MS By matching By MS/MS 2 2 1 1.4627 1.3624 19.516 5 Median 1.2103 1.1709 21.423 2 0 Median 1.5256 1.3564 9.8232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.658 1.7123 NaN 1 1 Median NaN NaN NaN 0 0 Median 18445000 7759000 10686000 10649000 4424900 6224300 2723300 1010200 1713100 0 0 0 0 0 0 5072500 2323900 2748500 0 0 0 934 351 971 4541;4542;4543;4544;4545 4666;4667;4668 4667 3 AFAVGVQQVLLK NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY FLKAFAVGVQQVLLKVLYQYKEKQYMAPRV K A F L K V 2 0 0 0 0 2 0 1 0 0 2 1 0 1 0 0 0 0 0 3 0 0 12 0 1271.7602 O95373 O95373 295 306 IPO7 Importin-7 yes yes 2 0.02198 31.934 By MS/MS By matching By MS/MS By matching By MS/MS 3 1 2 1 1 1.1913 1.1728 23.249 8 Median 1.3042 1.2659 6.6423 3 0 Plateau 1.4894 1.2881 NaN 1 0 Median 1.0002 1.068 9.5805 2 0 Median 1.1181 0.95206 NaN 1 0 Median 1.9722 2.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median 21486000 9247600 12238000 14202000 6101200 8100800 252470 98966 153510 4954600 2270800 2683800 399160 177230 221930 1677800 599450 1078300 0 0 0 935 1768 972 4546;4547;4548;4549;4550;4551;4552;4553 4669;4670;4671;4672 4669 4 AFAYTWFNLQAR DEFHPFIEALLPHVRAFAYTWFNLQARKRK HVRAFAYTWFNLQARKRKYFKKHEKRMSKD R A F A R K 3 1 1 0 0 1 0 0 0 0 1 0 0 2 0 0 1 1 1 0 0 0 12 0 1486.7357 A0A286YEX4;P08651;A0A590UJ82;A0A590UK73;B1AKN6;B1AKN7;B1AKN5;A0A590UK09;B1AKN8;Q12857 A0A286YEX4 48 59 NFIC;NFIA Nuclear factor 1 C-type;Nuclear factor 1;Nuclear factor 1 A-type no no 2 0.0015151 81.594 By MS/MS 1 0.98193 1.0361 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98193 1.0361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1305200 683960 621230 0 0 0 0 0 0 1305200 683960 621230 0 0 0 0 0 0 0 0 0 936 350;483 973 4554 4673 4673 1 AFDFLSEETEASLASR KRSSTLSQLPGDKSKAFDFLSEETEASLAS FDFLSEETEASLASRREQKREQYRQVKAHV K A F S R R 3 1 0 1 0 0 3 0 0 0 2 0 0 2 0 3 1 0 0 0 0 0 16 0 1771.8265 A0A087X2D8;O60271 A0A087X2D8 597 612 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 5.2439E-07 95.417 By MS/MS By matching 2 2 1.277 1.1365 7.8259 4 Median 1.1511 1.1546 12.985 2 1 Median 1.3022 1.1365 3.553 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7665600 3176400 4489200 6505900 2660600 3845300 1159700 515780 643890 0 0 0 0 0 0 0 0 0 0 0 0 937 134 974 4555;4556;4557;4558 4674;4675 4674 2 AFDIIER LITFFDEYHSGHIDRAFDIIERLKLVPLNQ YHSGHIDRAFDIIERLKLVPLNQESVEERV R A F E R L 1 1 0 1 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 862.45487 Q8N1F7;H3BVG0;H3BRD9;H3BV15 Q8N1F7 710 716 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0030389 105.39 By MS/MS By MS/MS By matching 3 1 2 1.1498 1.1089 14.495 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1652 1.233 8.6721 3 0 Plateau 1.5684 1.3514 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0959 0.95274 3.2506 2 0 Median 51989000 23770000 28219000 0 0 0 0 0 0 43228000 19831000 23396000 2269100 939410 1329700 0 0 0 6492300 2999200 3493100 938 3356 975 4559;4560;4561;4562;4563;4564 4676;4677;4678;4679;4680 4679 5 AFDLGATGVMTDYPTK QVYIWVLNEEQEYKRAFDLGATGVMTDYPT FDLGATGVMTDYPTKLRDFLHNFSA_____ R A F T K L 2 0 0 2 0 0 0 2 0 0 1 1 1 1 1 0 3 0 1 1 0 0 16 0 1685.7971 Q8N9F7;J3QRR6 Q8N9F7 289 304 GDPD1 Glycerophosphodiester phosphodiesterase domain-containing protein 1 yes no 2 0.0010166 39.266 By MS/MS 1 0.90171 0.88053 NaN 1 Median 0.90171 0.88053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2577900 1349900 1227900 2577900 1349900 1227900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 939 3398 976 4565 4681 4681 1 AFDLIVDRPVTLVR RRTPVQPNPIVYMMKAFDLIVDRPVTLVRE KAFDLIVDRPVTLVREFIERQHAKNRYYYY K A F V R E 1 2 0 2 0 0 0 0 0 1 2 0 0 1 1 0 1 0 0 3 0 0 14 1 1612.9301 O96000;H3BPJ9;H3BV16 O96000 30 43 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 2;3 0.00025085 60.628 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.98101 0.9634 20.38 7 Median 0.92134 0.98485 8.8745 2 1 Median 1.1767 0.99935 0.84361 2 0 Median 0.6128 0.63537 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62357 0.67626 NaN 1 0 Median 1.0815 0.9634 NaN 1 0 Median 92948000 44516000 48433000 61210000 30683000 30527000 29675000 12754000 16921000 1130300 568730 561590 0 0 0 647920 381280 266640 285300 128420 156880 940 1223 977 4566;4567;4568;4569;4570;4571;4572 4682;4683;4684;4685 4685 4 AFDMINR IRGGGHILPYDQPLRAFDMINRFIYGKGWD LPYDQPLRAFDMINRFIYGKGWDPYVG___ R A F N R F 1 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 7 0 865.41162 Q9H3G5;H7C0X5;H7C218 Q9H3G5 458 464 CPVL Probable serine carboxypeptidase CPVL yes no 2 0.00070785 138.38 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1966 1.1946 22.321 4 Median 1.3116 1.2998 NaN 1 0 Median 1.9319 1.6416 NaN 1 0 Median 0.98651 0.98307 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0916 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median 15938000 7033100 8905200 4036300 1800800 2235400 4324600 1585900 2738700 6757300 3266000 3491300 0 0 0 820180 380390 439790 0 0 0 941 3952 978 4573;4574;4575;4576 4686;4687;4688;4689 4688 4 AFDSAVAK HITLALEKQKLEEKRAFDSAVAKALEHHRS QKLEEKRAFDSAVAKALEHHRSEIQAEQDR R A F A K A 3 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 8 0 807.41267 Q16891;B9A067;C9J406;H7C463 Q16891 444 451 IMMT MICOS complex subunit MIC60 yes no 2 0.0084927 62.659 By matching By MS/MS 1 1 1.1414 1.0715 19.267 2 Median 0.92796 0.93507 NaN 1 0 Median 1.404 1.2279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5853100 2415800 3437300 1265100 651200 613900 4588000 1764600 2823400 0 0 0 0 0 0 0 0 0 0 0 0 942 3001 979 4577;4578 4690 4690 1 AFDSGIIPMEFVNK RFGGALDAAAKMFSKAFDSGIIPMEFVNKM KAFDSGIIPMEFVNKMKKEGKLIMGIGHRV K A F N K M 1 0 1 1 0 0 1 1 0 2 0 1 1 2 1 1 0 0 0 1 0 0 14 0 1566.7752 P53396 P53396 949 962 ACLY ATP-citrate synthase yes yes 2 6.7626E-05 84.054 By MS/MS By MS/MS By matching 3 2 2 1.0129 0.97983 8.6716 6 Median 1.0256 0.98542 8.9373 3 0 Median 1.0531 0.91354 5.0367 2 0 Median 0.95238 1.0231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58238000 27018000 31220000 42301000 19646000 22654000 13557000 6209200 7347600 2380400 1162800 1217500 0 0 0 0 0 0 0 0 0 943 2467 980;981 4579;4580;4581;4582;4583;4584;4585 4691;4692;4693;4694;4695 4693 1154 5 AFDTQLVER DDRPYDPEEEYDPERAFDTQLVERGRRHEV EYDPERAFDTQLVERGRRHEVERAPEAAAA R A F E R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1077.5455 Q9BTC0 Q9BTC0 1396 1404 DIDO1 Death-inducer obliterator 1 yes yes 2 3.7255E-09 138.54 By MS/MS By MS/MS 2 1 1.001 0.87819 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.001 0.87819 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1702000 812120 889870 0 0 0 0 0 0 0 0 0 1702000 812120 889870 0 0 0 0 0 0 944 3824 982 4586;4587;4588 4696;4697;4698 4697 3 AFDVPDAEAR DLRFQTGNKSPEVLRAFDVPDAEAREHPTV PEVLRAFDVPDAEAREHPTVVPSHKSPVLD R A F A R E 3 1 0 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1089.5091 Q96S66 Q96S66 444 453 CLCC1 Chloride channel CLIC-like protein 1 yes yes 2 0.0075699 66.621 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 945 3732 983 4589 4699 4699 1 AFDYFNLAANAGNSHAMAFLGK LHLHGGRGVEQNHQRAFDYFNLAANAGNSH AANAGNSHAMAFLGKMYSEGSDIVPQSNET R A F G K M 6 0 3 1 0 0 0 2 1 0 2 1 1 3 0 1 0 0 1 0 0 0 22 0 2329.095 Q9UBV2 Q9UBV2 397 418 SEL1L Protein sel-1 homolog 1 yes yes 3 0.049836 16.716 By MS/MS 1 0.73179 0.64692 NaN 1 Median NaN NaN NaN 0 0 Median 0.73179 0.64692 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2144800 1078900 1065900 0 0 0 2144800 1078900 1065900 0 0 0 0 0 0 0 0 0 0 0 0 946 4250 984 4590 4700 4700 1 AFEADSTVIEK SKDLHLLEEIALTLRAFEADSTVIEKWMDG LTLRAFEADSTVIEKWMDGVKDFLMKQQAA R A F E K W 2 0 0 1 0 0 2 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 11 0 1208.5925 P46939 P46939 1020 1030 UTRN Utrophin yes yes 2 0.0059542 45.137 By matching By MS/MS 2 1 1.2623 1.0964 32.965 3 Median NaN NaN NaN 0 0 Median 1.1368 0.98928 14.542 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9857 1.7018 NaN 1 0 Median 6240500 2467900 3772700 0 0 0 4771900 2062800 2709100 0 0 0 0 0 0 0 0 0 1468600 405080 1063600 947 2349 985 4591;4592;4593 4701 4701 1 AFEDDAIQLVAR SQLQQILRSRLKHLKAFEDDAIQLVARKVA HLKAFEDDAIQLVARKVAALSGDARRCLDI K A F A R K 3 1 0 2 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 12 0 1346.683 Q13415 Q13415 699 710 ORC1 Origin recognition complex subunit 1 yes yes 2 0.0014049 82.287 By MS/MS 1 0.76235 0.81572 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76235 0.81572 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1799100 1047800 751240 0 0 0 0 0 0 1799100 1047800 751240 0 0 0 0 0 0 0 0 0 948 2812 986 4594 4702 4702 1 AFEDDDITHVEGSVDPIR LSHISACDGIFHLTRAFEDDDITHVEGSVD DDDITHVEGSVDPIRDIEIIHEELQLKDEE R A F I R D 1 1 0 4 0 0 2 1 1 2 0 0 0 1 1 1 1 0 0 2 0 0 18 0 2013.928 J3KQ32;Q9NTK5 J3KQ32 146 163 OLA1 Obg-like ATPase 1 yes no 3 0.030495 26.474 By MS/MS 1 1.5149 1.3221 NaN 1 Median NaN NaN NaN 0 0 Median 1.5149 1.3221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9020000 3225800 5794100 0 0 0 9020000 3225800 5794100 0 0 0 0 0 0 0 0 0 0 0 0 949 1315 987 4595 4703 4703 0 AFEDEMSGR GKDLTSVMRLLSKHRAFEDEMSGRSGHFEQ LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI R A F G R S 1 1 0 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1040.4233 Q01082;A0A087WUZ3;F8W6C1 Q01082 682 690 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00088636 92.439 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1.1567 1.0607 25.174 8 Median 1.4357 1.4129 NaN 1 0 Median 1.5813 1.2989 32.412 2 0 Median 0.85018 0.92664 NaN 1 0 Median 1.2379 1.0892 NaN 1 0 Median 1.0809 1.1287 NaN 1 0 Median 0.98158 0.81188 10.026 2 0 Median 48875000 23536000 25339000 3039200 1385800 1653400 15154000 6741100 8413200 18380000 9842700 8536900 4185600 1768200 2417400 5317700 2452700 2864900 2798900 1345600 1453300 950 2681 988 4596;4597;4598;4599;4600;4601;4602;4603 4704;4705;4706;4707;4708;4709;4710 4705 6 AFEDTLQLMER LFLFEFDEQGRELQKAFEDTLQLMERSLPE ELQKAFEDTLQLMERSLPEIWTLTYQQNSA K A F E R S 1 1 0 1 0 1 2 0 0 0 2 0 1 1 0 0 1 0 0 0 0 0 11 0 1351.6442 O95163;F5H2T0;H0YDF3 O95163 1258 1268 IKBKAP Elongator complex protein 1 yes no 2 0.00016143 105.4 By MS/MS By MS/MS 1 1 1.2318 1.1231 12.811 2 Median 1.2716 1.2295 NaN 1 0 Median 1.1934 1.0258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6287400 3055900 3231400 4504900 2217600 2287200 1782500 838340 944200 0 0 0 0 0 0 0 0 0 0 0 0 951 1749 989 4604;4605 4711;4712;4713;4714 4713 4 AFEEAEK IMSKLAGESESNLRKAFEEAEKNAPAIIFI ESESNLRKAFEEAEKNAPAIIFIDELDAIA K A F E K N 2 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 7 0 822.37595 P55072 P55072 289 295 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.062015 37.094 By matching By MS/MS 1 1 1.0821 1.0309 7.4191 2 Median 1.079 1.0864 NaN 1 0 Median 1.0853 0.9782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1131500 537550 593940 294670 133460 161210 836810 404090 432730 0 0 0 0 0 0 0 0 0 0 0 0 952 2494 990 4606;4607 4715 4715 1 AFEEDIETPPTR HKRTSLSAEDAEVTKAFEEDIETPPTRNIP VTKAFEEDIETPPTRNIPSPGQLDPDTRIP K A F T R N 1 1 0 1 0 0 3 0 0 1 0 0 0 1 2 0 2 0 0 0 0 0 12 0 1403.6569 Q9P2D1 Q9P2D1 2544 2555 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.00040015 142.43 By MS/MS By matching By matching 1 1 1 1.0618 0.92291 55.062 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71902 0.75989 NaN 1 0 Median 1.0618 0.92291 NaN 1 0 Median 1.8291 2.1411 NaN 1 0 Median NaN NaN NaN 0 0 Median 14698000 8419300 6279000 0 0 0 0 0 0 8953300 5746500 3206800 622700 297060 325640 5122400 2375800 2746600 0 0 0 953 4220 991 4608;4609;4610 4716 4716 1 AFEHLQQLELIKPMER KAHSVYNFEKPVVMKAFEHLQQLELIKPME FEHLQQLELIKPMERTSGNSQREYQLMKLL K A F E R T 1 1 0 0 0 2 3 0 1 1 3 1 1 1 1 0 0 0 0 0 0 0 16 1 1981.0455 O43929 O43929 375 390 ORC4 Origin recognition complex subunit 4 yes yes 3 4.1738E-06 84.874 By MS/MS By matching 1 1 0.99043 0.98285 22.123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8294 0.84053 NaN 1 0 Median 1.1827 1.1493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8287900 4913300 3374600 0 0 0 0 0 0 7965800 4757500 3208300 322120 155820 166300 0 0 0 0 0 0 954 1602 992 4611;4612 4717;4718 4717 2 AFELLHLHLDLR HSAQAVDVASASNFRAFELLHLHLDLRAEF NFRAFELLHLHLDLRAEFGPPGPGAGSRGL R A F L R A 1 1 0 1 0 0 1 0 2 0 5 0 0 1 0 0 0 0 0 0 0 0 12 0 1475.8249 Q9H4A4;A6NKB8;A0A087WU27 Q9H4A4 33 44 RNPEP Aminopeptidase B yes no 2 0.00015275 126.71 By MS/MS 1 2.8135 2.4342 NaN 1 Median NaN NaN NaN 0 0 Median 2.8135 2.4342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10283000 3513700 6769700 0 0 0 10283000 3513700 6769700 0 0 0 0 0 0 0 0 0 0 0 0 955 3964 993 4613 4719 4719 1 AFELMHSGK DEFVTHNLSFDEINKAFELMHSGKSIRTVV FDEINKAFELMHSGKSIRTVVKI_______ K A F G K S 1 0 0 0 0 0 1 1 1 0 1 1 1 1 0 1 0 0 0 0 0 0 9 0 1018.4906 P11766 P11766 358 366 ADH5 Alcohol dehydrogenase class-3 yes yes 2 0.0054443 71.501 By MS/MS By MS/MS 1 1 1.2139 1.0786 15.513 2 Median 1.0271 0.96652 NaN 1 1 Median 1.4346 1.2036 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10305000 4710200 5594600 6461400 3023800 3437700 3843300 1686400 2156900 0 0 0 0 0 0 0 0 0 0 0 0 956 1970 994 4614;4615 4720;4721 4721 2 AFEPATGR GGARVEPADASGTEKAFEPATGRVIATFTC DASGTEKAFEPATGRVIATFTCSGEKEVNL K A F G R V 2 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 8 0 847.41882 P49189 P49189 31 38 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.0072183 67.981 By MS/MS By matching 1 1 0.93199 0.87714 14.687 2 Median NaN NaN NaN 0 0 Median 1.1538 0.97314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75282 0.79062 NaN 1 0 Median NaN NaN NaN 0 0 Median 9987400 5230300 4757100 0 0 0 7331200 3548700 3782400 0 0 0 0 0 0 2656200 1681500 974700 0 0 0 957 2372 995 4616;4617 4722;4723 4723 2 AFEVSENGNLVVSGK TGTVSLEVRLLEASRAFEVSENGNLVVSGK AFEVSENGNLVVSGKVYQWDDPDPRLFDHP R A F G K V 1 0 2 0 0 0 2 2 0 0 1 1 0 1 0 2 0 0 0 3 0 0 15 0 1548.7784 P49327;A0A0U1RQF0 P49327 943 957 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.5325E-07 97.214 By MS/MS By MS/MS 2 2 1.4185 1.3358 14.578 4 Median 1.2606 1.2344 18.666 2 0 Median 1.5734 1.3844 12.556 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56239000 24449000 31790000 42954000 19508000 23446000 13285000 4940900 8344100 0 0 0 0 0 0 0 0 0 0 0 0 958 2377 996 4618;4619;4620;4621 4724;4725;4726;4727;4728;4729;4730;4731;4732 4725 9 AFFAGSQR RQRSGGMERPFVLARAFFAGSQRFGAVWTG RPFVLARAFFAGSQRFGAVWTGDNTAEWDH R A F Q R F 2 1 0 0 0 1 0 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 882.4348 E9PKU7;Q14697;F5H6X6 Q14697 603 610 GANAB Neutral alpha-glucosidase AB no no 2 0.0032257 100.19 By MS/MS By MS/MS 2 2 1.3176 1.0837 2.9338 3 Plateau 1.1172 1.0765 NaN 1 1 Median 1.3161 1.1096 3.3312 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75657000 31804000 43853000 11197000 5209800 5987200 64460000 26594000 37866000 0 0 0 0 0 0 0 0 0 0 0 0 959 2896;951 997 4622;4623;4624;4625 4733;4734;4735;4736;4737;4738 4736 6 AFFESHPAPSAER SVEGFAVDKMAGEVKAFFESHPAPSAERTI VKAFFESHPAPSAERTIQQCCENILLNAAW K A F E R T 3 1 0 0 0 0 2 0 1 0 0 0 0 2 2 2 0 0 0 0 0 0 13 0 1444.6735 E9PLK3;P55786;H0YDG0 E9PLK3 866 878 NPEPPS Puromycin-sensitive aminopeptidase yes no 2;3 1.2121E-06 135.55 By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 0.89815 0.77664 15.166 11 Median 0.77294 0.73605 14.196 4 0 Median 0.96678 0.83585 11.562 4 0 Median 0.78118 0.86569 18.241 2 0 Median 1.2983 1.1108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92509000 49257000 43251000 60909000 33311000 27598000 24686000 12333000 12353000 6232300 3295400 2936900 680510 317570 362940 0 0 0 0 0 0 960 960 998 4626;4627;4628;4629;4630;4631;4632;4633;4634;4635;4636 4739;4740;4741;4742;4743;4744;4745;4746 4739 8 AFFFPSFNVR GDDTWKDLFPGAFSKAFFFPSFNVRDLDTV GAFSKAFFFPSFNVRDLDTVDNGILEHLYP K A F V R D 1 1 1 0 0 0 0 0 0 0 0 0 0 4 1 1 0 0 0 1 0 0 10 0 1230.6186 Q8TEQ8 Q8TEQ8 193 202 PIGO GPI ethanolamine phosphate transferase 3 yes yes 2 0.044206 29.81 By MS/MS By matching 2 1 1.092 1.0991 20.447 3 Median 1.0123 1.0108 11.841 2 0 Median NaN NaN NaN 0 0 Median 1.2584 1.3964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2136300 1000700 1135600 1881400 880800 1000600 0 0 0 254920 119900 135020 0 0 0 0 0 0 0 0 0 961 3479 999 4637;4638;4639 4747 4747 1 AFFSEVER RDPSKQYGLKMKTSRAFFSEVERRFDAMPF LKMKTSRAFFSEVERRFDAMPFTLRAFEDE R A F E R R 1 1 0 0 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 8 0 983.47125 Q9UQ80;F8VR77 Q9UQ80 264 271 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0023142 116.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 4 5 2 3 1.1085 0.98638 16.886 19 Median 1.0781 1.0376 6.26 2 0 Median 1.1487 0.97043 1.9251 3 0 Linear 1.1814 1.1855 24.096 4 1 Median 1.1449 0.97842 5.0305 5 0 Median 0.99723 1.0327 5.9521 2 0 Median 1.0617 0.9005 3.8165 3 0 Plateau 684540000 318830000 365710000 70082000 33654000 36428000 24054000 11083000 12970000 186720000 86339000 100380000 391810000 182180000 209630000 8189600 3847300 4342300 3679600 1717200 1962400 962 4360 1000 4640;4641;4642;4643;4644;4645;4646;4647;4648;4649;4650;4651;4652;4653;4654;4655;4656;4657;4658 4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766 4762 19 AFFSEVERR RDPSKQYGLKMKTSRAFFSEVERRFDAMPF KMKTSRAFFSEVERRFDAMPFTLRAFEDEK R A F R R F 1 2 0 0 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 9 1 1139.5724 Q9UQ80;F8VR77 Q9UQ80 264 272 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00038113 109.71 By MS/MS By MS/MS By MS/MS 1 1 1 0.84989 0.8541 30.592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6354 0.68796 NaN 1 1 Median 1.1368 1.0604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58343000 28242000 30100000 0 0 0 0 0 0 5932900 3610000 2323000 52410000 24632000 27777000 0 0 0 0 0 0 963 4360 1001 4659;4660;4661 4767;4768;4769 4769 3 AFGDSSYLLR THSGQKPYKCPHCGKAFGDSSYLLRHQRTH PHCGKAFGDSSYLLRHQRTHSHERPYSCTE K A F L R H 1 1 0 1 0 0 0 1 0 0 2 0 0 1 0 2 0 0 1 0 0 0 10 0 1127.5611 H3BS42;Q9H5H4 H3BS42 322 331 ZNF768 Zinc finger protein 768 yes no 2 0.00038325 92.439 By MS/MS 1 0.80301 0.81918 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80301 0.81918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9722700 3533600 6189200 0 0 0 0 0 0 9722700 3533600 6189200 0 0 0 0 0 0 0 0 0 964 1232 1002 4662 4770;4771 4770 2 AFGFMTR RDAIFKQFHFKDFNRAFGFMTRVALQAEKL FHFKDFNRAFGFMTRVALQAEKLDHHPEWF R A F T R V 1 1 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 7 0 828.39524 P61457 P61457 46 52 PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes yes 2 0.0022148 108.24 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1514 1.0237 9.864 4 Median 1.1165 1.0788 NaN 1 0 Median 1.2011 0.97146 NaN 1 0 Median 1.1435 1.1431 NaN 1 0 Median 1.1595 0.91947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104000000 48983000 55013000 77227000 36876000 40350000 23864000 10759000 13105000 2380100 1104000 1276200 525880 244110 281770 0 0 0 0 0 0 965 2558 1003 4663;4664;4665;4666 4772;4773;4774;4775;4776;4777;4778 4777 7 AFGFSHLEALLDDSK SYIRKTRPDGNCFYRAFGFSHLEALLDDSK AFGFSHLEALLDDSKELQRRFKAVSAKSKE R A F S K E 2 0 0 2 0 0 1 1 1 0 3 1 0 2 0 2 0 0 0 0 0 0 15 0 1648.8097 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 95 109 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2 1.5547E-09 113.38 By MS/MS 1 1.1179 0.93575 NaN 1 Median NaN NaN NaN 0 0 Median 1.1179 0.93575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41401000 19289000 22112000 0 0 0 41401000 19289000 22112000 0 0 0 0 0 0 0 0 0 0 0 0 966 1322 1004 4667 4779 4779 1 AFGGQSLK GMPFSRTEDGKIYQRAFGGQSLKFGKGGQA DGKIYQRAFGGQSLKFGKGGQAHRCCCVAD R A F L K F 1 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 8 0 806.42865 P31040;D6RFM5;A0A494C1T6 P31040 172 179 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.014311 63.565 By MS/MS By MS/MS 1 1 1.4698 1.3143 6.1463 2 Median 1.3167 1.2584 NaN 1 0 Median 1.6406 1.3726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19521000 7630200 11891000 5488500 2305500 3183000 14032000 5324700 8707700 0 0 0 0 0 0 0 0 0 0 0 0 967 2200 1005 4668;4669 4780;4781 4780 2 AFGHHAVSLLDGGLR DQGLYSAPRVWWMFRAFGHHAVSLLDGGLR AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQ R A F L R H 2 1 0 1 0 0 0 3 2 0 3 0 0 1 0 1 0 0 0 1 0 0 15 0 1548.8161 P25325;B1AH49 P25325 119 133 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2;3 5.0324E-07 93.823 By MS/MS By MS/MS 2 1 1.2203 1.1348 12.517 3 Median 1.093 1.0223 15.51 2 1 Median 1.3648 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55143000 25057000 30086000 29366000 13741000 15625000 25777000 11316000 14461000 0 0 0 0 0 0 0 0 0 0 0 0 968 2131 1006 4670;4671;4672 4782;4783;4784;4785;4786;4787 4783 6 AFGPGLEGGLVNK FRVGVTEGCDPTRVRAFGPGLEGGLVNKAN VRAFGPGLEGGLVNKANRFTVETRGAGTGG R A F N K A 1 0 1 0 0 0 1 4 0 0 2 1 0 1 1 0 0 0 0 1 0 0 13 0 1257.6717 Q14315 Q14315 1355 1367 FLNC Filamin-C yes yes 2 1.1416E-08 95.573 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.029 1.0334 13.445 5 Median 1.066 1.0469 1.8427 2 1 Median 0.92065 0.82442 NaN 1 0 Median 1.0759 1.1876 NaN 1 1 Median 0.99984 0.96618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152400000 74419000 77984000 77818000 35081000 42737000 60969000 32701000 28268000 11022000 5362400 5660000 2594200 1275000 1319100 0 0 0 0 0 0 969 2871 1007 4673;4674;4675;4676;4677;4678 4788;4789;4790;4791;4792;4793;4794;4795 4794 8 AFGPGLQGGSAGSPAR FPLEAVAPTKPSKVKAFGPGLQGGSAGSPA FGPGLQGGSAGSPARFTIDTKGAGTGGLGL K A F A R F 3 1 0 0 0 1 0 5 0 0 1 0 0 1 2 2 0 0 0 0 0 0 16 0 1428.711 P21333;Q60FE5;A0A087WWY3 P21333 1072 1087 FLNA Filamin-A no no 2 1.8516E-14 176.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 2 0.78371 0.7151 17.448 15 Median 0.86853 0.81459 8.3541 3 0 Plateau 0.74477 0.62545 7.7856 3 0 Median 0.72044 0.78537 0.58202 3 1 Median 0.79446 0.70084 20.988 3 0 Median 1.0157 1.0432 NaN 1 0 Median 0.7568 0.62101 10.165 2 1 Median 723180000 391850000 331330000 179740000 86612000 93126000 429850000 243730000 186120000 63362000 34569000 28794000 27841000 15378000 12463000 11426000 5746400 5679700 10959000 5808400 5150100 970 2088;3120 1008 4679;4680;4681;4682;4683;4684;4685;4686;4687;4688;4689;4690;4691;4692;4693 4796;4797;4798;4799;4800;4801;4802;4803;4804;4805;4806;4807;4808;4809;4810;4811;4812;4813;4814;4815;4816;4817;4818;4819;4820;4821;4822 4807 27 AFGSTIVINPEK GGVQVLLQQWIEYIKAFGSTIVINPEKDKT YIKAFGSTIVINPEKDKTMVQELLDFKDKV K A F E K D 1 0 1 0 0 0 1 1 0 2 0 1 0 1 1 1 1 0 0 1 0 0 12 0 1274.6871 Q13620;K4DI93 Q13620 500 511 CUL4B Cullin-4B yes no 2 0.013999 54.608 By MS/MS 1 0.72607 0.66574 NaN 1 Median 0.72607 0.66574 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7775600 4012800 3762800 7775600 4012800 3762800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 971 1358 1009 4694 4823 4823 1 AFGVGVAYR GGEHYWEVRYEPDSKAFGVGVAYRSLGRFE YEPDSKAFGVGVAYRSLGRFEQLGKTAASW K A F Y R S 2 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 1 2 0 0 9 0 938.4974 M0R366;Q9BTV5;M0R1R0;M0QY68 M0R366 368 376 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 2 0.0053212 72.138 By MS/MS By MS/MS 1 1 0.85659 0.79418 16.226 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70643 0.70809 NaN 1 1 Median 1.0387 0.89074 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14336000 7936800 6399400 0 0 0 0 0 0 10891000 6224100 4666700 3445400 1712700 1732700 0 0 0 0 0 0 972 1438 1010 4695;4696 4824;4825 4824 2 AFGYYGPLR VGNLGNNGNKTELERAFGYYGPLRSVWVAR KTELERAFGYYGPLRSVWVARNPPGFAFVE R A F L R S 1 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 2 0 0 0 9 0 1042.5236 P84103;A0A087X2D0 P84103 29 37 SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 2.3777E-05 155.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 9 5 1.0399 0.97467 21.671 23 Median 1.0345 0.99664 1.2255 2 0 Median 1.1612 0.98224 5.3083 3 0 Median 0.9229 0.9101 1.6465 2 1 Median 1.1647 0.94454 4.214 2 0 Median 0.97356 0.97916 5.9568 9 0 Median 1.1598 0.93774 47.794 5 0 Median 1568400000 794770000 773620000 97001000 47909000 49092000 27549000 12839000 14709000 362360000 184220000 178140000 70063000 32148000 37915000 895360000 460810000 434550000 116050000 56845000 59209000 973 2668 1011 4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719 4826;4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843;4844;4845;4846;4847;4848;4849;4850;4851;4852;4853;4854;4855;4856;4857;4858;4859;4860;4861;4862;4863;4864;4865;4866;4867;4868;4869;4870 4842 45 AFHITNDEPIPFWTFLSR LAAEQLSRDSTLGGKAFHITNDEPIPFWTF ITNDEPIPFWTFLSRILTGLNYEAPKYHIP K A F S R I 1 1 1 1 0 0 1 0 1 2 1 0 0 3 2 1 2 1 0 0 0 0 18 0 2190.0898 Q15738 Q15738 264 281 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 2;3 6.9128E-07 85.258 By MS/MS 2 0.95341 0.82464 7.7463 2 Median NaN NaN NaN 0 0 Median 0.95341 0.82464 7.7463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4045100 1963900 2081100 0 0 0 4045100 1963900 2081100 0 0 0 0 0 0 0 0 0 0 0 0 974 2966 1012 4720;4721 4871;4872;4873 4873 3 AFHNEAQVNPER VNAAQDSTDLVAKLRAFHNEAQVNPERKNL KLRAFHNEAQVNPERKNLKWIGLDLSNGKP R A F E R K 2 1 2 0 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 12 0 1410.664 P17987;E7EQR6;F5H282 P17987 469 480 TCP1 T-complex protein 1 subunit alpha yes no 2;3 3.5815E-06 109.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 10 8 5 11 12 1.069 1.018 22.828 53 Median 1.3504 1.3775 32.272 7 0 Median 1.1083 0.93288 30.13 10 2 Median 0.99333 1.0131 5.6048 8 0 Median 1.1825 0.9754 17.66 5 0 Median 1.0133 1.0225 26.232 11 0 Median 1.2846 1.0301 7.0184 12 0 Median 958960000 453410000 505550000 17024000 8633400 8390400 71290000 34204000 37086000 217070000 104770000 112310000 21537000 8839900 12697000 486210000 234100000 252110000 145820000 62870000 82951000 975 2051 1013 4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738;4739;4740;4741;4742;4743;4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774 4874;4875;4876;4877;4878;4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900;4901;4902;4903 4889 30 AFHPFIAGPYNR AEQDKRAVERLEVEKAFHPFIAGPYNRLVG VEKAFHPFIAGPYNRLVGEIMQETGTRINI K A F N R L 2 1 1 0 0 0 0 1 1 1 0 0 0 2 2 0 0 0 1 0 0 0 12 0 1388.699 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 232 243 HDLBP Vigilin yes no 2;3 0.00016836 81.548 By MS/MS By MS/MS 3 1 0.83566 0.7842 38.827 4 Median 0.84054 0.78845 28.755 3 0 Plateau NaN NaN NaN 0 0 Median 1.121 1.233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51869000 27448000 24421000 46817000 25142000 21674000 0 0 0 5052500 2305200 2747300 0 0 0 0 0 0 0 0 0 976 4 1014 4775;4776;4777;4778 4904;4905;4906;4907;4908;4909;4910 4904 6 AFHSSLHESIQKPYNQK DVKLVPSSSYIKVVKAFHSSLHESIQKPYN HSSLHESIQKPYNQKSIHSFMTHPEFAIEE K A F Q K S 1 0 1 0 0 2 1 0 2 1 1 2 0 1 1 3 0 0 1 0 0 0 17 1 2013.0068 P23634 P23634 1145 1161 ATP2B4 Plasma membrane calcium-transporting ATPase 4 yes yes 4 0.022832 17.465 By matching By MS/MS 1 2 0.96417 0.94232 20.982 3 Median 0.99041 1.0695 NaN 1 0 Median 0.84807 0.8179 20.026 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5180300 2607400 2573000 989280 457270 532010 4191100 2150100 2040900 0 0 0 0 0 0 0 0 0 0 0 0 977 2119 1015 4779;4780;4781 4911 4911 1 AFIAHFQDNLHSVNR KDGMRNKETLEGREKAFIAHFQDNLHSVNR AFIAHFQDNLHSVNRDLNELERLSNLVGKP K A F N R D 2 1 2 1 0 1 0 0 2 1 1 0 0 2 0 1 0 0 0 1 0 0 15 0 1767.8805 Q6P2C8;A0A494C0K7;A0A494C0P0 Q6P2C8 51 65 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 3 9.5296E-05 64.675 By matching By matching By MS/MS 1 1 1 1.3319 1.2916 5.4713 3 Plateau 1.3084 1.2214 NaN 1 0 Median 1.3837 1.1612 NaN 1 0 Median 1.3319 1.2953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30013000 11082000 18931000 7658500 3147800 4510700 2554500 736770 1817800 19800000 7197200 12603000 0 0 0 0 0 0 0 0 0 978 460 1016 4782;4783;4784 4912 4912 1 AFIGFEGVK VIDQDMATRLKPAQKAFIGFEGVKGKKKMS LKPAQKAFIGFEGVKGKKKMSAAEAVKEKW K A F V K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 0 0 0 0 1 0 0 9 0 966.51747 P15924 P15924 2694 2702 DSP Desmoplakin yes yes 2 0.0022552 73.26 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 5 5 1.1724 1.0382 13.644 17 Median 1.0073 1.0079 NaN 1 0 Median 1.2008 1.0683 0.47081 2 0 Median 0.75859 0.83106 8.4339 2 0 Median 1.2686 1.1676 12.374 2 0 Median 0.95256 0.97277 7.0198 5 0 Median 1.3769 1.173 8.45 5 0 Median 37855000 18890000 18966000 8834400 3953200 4881100 3679900 1698900 1981000 7256300 4259800 2996500 1002500 471610 530860 15548000 7837800 7710600 1534100 668500 865650 979 2021 1017 4785;4786;4787;4788;4789;4790;4791;4792;4793;4794;4795;4796;4797;4798;4799;4800;4801 4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923 4919 11 AFIISFK VPKLLSPLVKDWAPKAFIISFKLETDPAIV LVKDWAPKAFIISFKLETDPAIVINRARKA K A F F K L 1 0 0 0 0 0 0 0 0 2 0 1 0 2 0 1 0 0 0 0 0 0 7 0 824.47963 Q9HAB8 Q9HAB8 225 231 PPCS Phosphopantothenate--cysteine ligase yes yes 2 0.028199 50.966 By MS/MS By matching 1 1 1.4105 1.2778 10.82 2 Median 1.4245 1.3794 NaN 1 0 Median 1.3967 1.1837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4344100 1783700 2560500 3459000 1412300 2046700 885120 371400 513730 0 0 0 0 0 0 0 0 0 0 0 0 980 4007 1018 4802;4803 4924;4925 4924 2 AFIITGQTYTR EQLDKMVTEKAGFKRAFIITGQTYTRKVDI GFKRAFIITGQTYTRKVDIEVLSVLASLGA R A F T R K 1 1 0 0 0 1 0 1 0 2 0 0 0 1 0 0 3 0 1 0 0 0 11 0 1269.6717 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;A0A096LP92;A0A096LPA2 A0A1B0GWJ0 235 245 ADSL Adenylosuccinate lyase yes no 2 0.00017071 92.062 By MS/MS By MS/MS 1 1 1.2023 1.0718 3.5087 2 Median 1.1656 1.0987 NaN 1 0 Median 1.2401 1.0455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33515000 15366000 18149000 25949000 12803000 13146000 7565900 2563000 5002900 0 0 0 0 0 0 0 0 0 0 0 0 981 200 1019 4804;4805 4926;4927;4928 4927 3 AFINLEAAGVGGK SHGFITQHPWASLIRAFINLEAAGVGGKEL IRAFINLEAAGVGGKELVFQTGPENPWLVQ R A F G K E 3 0 1 0 0 0 1 3 0 1 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1245.6717 Q7Z2K6;E7ER77;A0A0C4DGF0 Q7Z2K6 273 285 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2 8.722E-07 112.75 By MS/MS By MS/MS By MS/MS 3 3 1 1.1692 1.1732 31.646 7 Median 1.1692 1.1732 15.874 3 2 Plateau 1.4514 1.2845 45.437 3 0 Plateau 1.3667 1.4661 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57898000 26229000 31668000 37942000 18139000 19802000 12980000 5790100 7189400 6976700 2300000 4676700 0 0 0 0 0 0 0 0 0 982 883 1020 4806;4807;4808;4809;4810;4811;4812 4929;4930;4931;4932;4933;4934 4929 6 AFIPAIDSFGFETDLR TQDAPIPGSPLYTIKAFIPAIDSFGFETDL FIPAIDSFGFETDLRTHTQGQAFSLSVFHH K A F L R T 2 1 0 2 0 0 1 1 0 2 1 0 0 3 1 1 1 0 0 0 0 0 16 0 1797.8938 Q15029 Q15029 873 888 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.00013515 56.225 By matching By MS/MS By matching By MS/MS 1 3 1 1 0.86773 0.92855 46.04 6 Median 0.28957 0.30686 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83005 0.88384 11.886 3 1 Median 1.1016 0.97982 NaN 1 0 Median 0.96802 1.0225 NaN 1 0 Median NaN NaN NaN 0 0 Median 6981700 4016000 2965700 1159100 881160 277960 0 0 0 2170900 1176400 994460 139900 67982 71917 3511800 1890400 1621400 0 0 0 983 2917 1021 4813;4814;4815;4816;4817;4818 4935;4936;4937 4937 3 AFIPEMLK GIPVSVDKMTQAQLRAFIPEMLKYSTGRGK MTQAQLRAFIPEMLKYSTGRGKPGWGKESC R A F L K Y 1 0 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 8 0 947.51502 Q16656 Q16656 207 214 NRF1 Nuclear respiratory factor 1 yes yes 2 0.015483 50.127 By MS/MS 1 0.65829 0.65548 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65829 0.65548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6124700 3437100 2687600 0 0 0 0 0 0 6124700 3437100 2687600 0 0 0 0 0 0 0 0 0 984 2992 1022 4819 4938;4939 4939 2 AFIPQLLSR ELKEALDDVTLPRLKAFIPQLLSRLHIEAL TLPRLKAFIPQLLSRLHIEALLHGNITKQA K A F S R L 1 1 0 0 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 9 0 1043.6128 P14735;A0A3B3ISG5 P14735 714 722 IDE Insulin-degrading enzyme yes no 2 0.0054678 71.379 By MS/MS 1 0.92319 0.89269 NaN 1 Median 0.92319 0.89269 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4474700 2168900 2305800 4474700 2168900 2305800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 985 423 1023 4820 4940 4940 1 AFITNIPFDVK GNRFEPYANPTKRYRAFITNIPFDVKWQSL KRYRAFITNIPFDVKWQSLKDLVKEKVGEV R A F V K W 1 0 1 1 0 0 0 0 0 2 0 1 0 2 1 0 1 0 0 1 0 0 11 0 1263.6863 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 73 83 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.00015337 82.749 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 5 6 3 0.9644 0.87488 20.419 22 Median 1.3456 1.2633 11.42 3 0 Median 0.8998 0.7861 8.9573 5 0 Median 1.0571 1.0256 21.541 5 0 Median NaN NaN NaN 0 0 Median 0.74638 0.79517 9.5379 6 0 Median 1.2896 1.0568 4.5734 3 0 Plateau 442460000 242330000 200130000 15442000 7013100 8428900 26028000 14487000 11541000 144510000 76997000 67515000 0 0 0 241330000 137020000 104300000 15155000 6815400 8339200 986 116 1024 4821;4822;4823;4824;4825;4826;4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842 4941;4942;4943;4944;4945;4946;4947;4948;4949;4950;4951;4952;4953;4954;4955;4956;4957;4958;4959;4960 4943 20 AFIVTDEDIR KNPAVWLNTSQPLCKAFIVTDEDIRKQEER QPLCKAFIVTDEDIRKQEERVQQVRKKLEE K A F I R K 1 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1177.5979 Q9UBB5 Q9UBB5 361 370 MBD2 Methyl-CpG-binding domain protein 2 yes yes 2 0.0029636 70.919 By MS/MS By MS/MS 2 1 1.1756 1.022 14.268 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1051 1.0941 19.396 2 1 Median 1.1756 1.022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13390000 5558400 7832000 0 0 0 0 0 0 9790900 4361900 5429000 3599500 1196600 2402900 0 0 0 0 0 0 987 4233 1025 4843;4844;4845 4961;4962;4963 4963 2 AFKDEYMVNLVR YWRSCAMMMGCVIERAFKDEYMVNLVRAPE IERAFKDEYMVNLVRAPEVPVLDSKLDEWM R A F V R A 1 1 1 1 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 2 0 0 12 1 1483.7493 C9JG87;Q9NYK5 C9JG87 157 168 MRPL39 39S ribosomal protein L39, mitochondrial yes no 3 0.00046698 52.693 By MS/MS By matching By MS/MS 2 1 1 1.1355 1.2263 19.24 4 Median 1.0226 1.0553 11.77 2 0 Median 1.6809 1.5254 NaN 1 0 Median 1.2044 1.3112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13117000 5713900 7403300 6903200 3176300 3726900 1977000 684970 1292000 4237000 1852600 2384400 0 0 0 0 0 0 0 0 0 988 697 1026 4846;4847;4848;4849 4964;4965;4966 4966 3 AFKDTGKTPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK M A F H R I 2 1 0 1 0 0 2 1 1 1 0 2 0 1 2 0 2 0 0 2 0 0 18 2 1994.0585 P60866;E5RJX2;E5RIP1 P60866 2 19 RPS20 40S ribosomal protein S20 yes no 3;4 2.3763E-05 52.172 By MS/MS 2 0.76497 0.80412 1.2136 2 Median 0.76497 0.80412 1.2136 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27488000 15533000 11955000 27488000 15533000 11955000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 989 2530 1027 4850;4851 4967;4968 4967 2 AFLADPSAFVAAAPVAAATTAAPAAAAAPAK SVETDYTFPLAEKVKAFLADPSAFVAAAPV AATTAAPAAAAAPAKVEAKEESEESDEDMG K A F A K V 17 0 0 1 0 0 0 0 0 0 1 1 0 2 4 1 2 0 0 2 0 0 31 0 2751.4596 P05388;F8VWS0;F8W1K8 P05388 267 297 RPLP0 60S acidic ribosomal protein P0 yes no 2;3;4 1.4622E-50 114.99 By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 0.57116 0.51403 10.632 9 Median 0.52726 0.47878 2.2134 3 2 Plateau 0.60792 0.51583 0.49313 2 0 Median 0.54427 0.52335 7.2887 2 0 Median NaN NaN NaN 0 0 Median 0.62135 0.61873 2.7562 2 0 Median NaN NaN NaN 0 0 Median 106530000 72714000 33818000 87041000 60823000 26218000 1065600 709720 355880 6789500 4121300 2668100 0 0 0 11636000 7059400 4576800 0 0 0 990 1865 1028 4852;4853;4854;4855;4856;4857;4858;4859;4860 4969;4970;4971;4972;4973;4974;4975;4976;4977;4978;4979;4980 4973 12 AFLASGPYLTHQQK ______________________________ MAFLASGPYLTHQQKVLRLYKRALRHLESW M A F Q K V 2 0 0 0 0 2 0 1 1 0 2 1 0 1 1 1 1 0 1 0 0 0 14 0 1559.8096 A0A3B3IT57;E9PH64;E7EWZ0;E9PF49;Q9Y6M9 A0A3B3IT57 2 15 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes no 2 6.2188E-07 119.53 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 1.0087 0.91812 35.109 8 Median 0.90666 0.83628 3.3851 2 0 Median 1.9684 1.6886 36.309 2 0 Median 0.77784 0.72905 NaN 1 0 Median 1.0753 0.86626 NaN 1 0 Median 0.94622 0.97309 NaN 1 0 Median 1.1715 0.98503 NaN 1 0 Median 75068000 39225000 35844000 55664000 28695000 26969000 1284500 549920 734610 13430000 7547300 5882200 136300 65030 71271 3691800 2015300 1676500 862820 352070 510750 991 433 1029 4861;4862;4863;4864;4865;4866;4867;4868 4981;4982;4983;4984;4985 4982 5 AFLASPEYVNLPINGNGK LSAYVGRLSARPKLKAFLASPEYVNLPING ASPEYVNLPINGNGKQ______________ K A F G K Q 2 0 3 0 0 0 1 2 0 1 2 1 0 1 2 1 0 0 1 1 0 0 18 0 1902.984 P09211;A8MX94 P09211 192 209 GSTP1 Glutathione S-transferase P yes no 2 1.2124E-12 128.17 By MS/MS By MS/MS 1 1 0.80033 0.74878 3.6962 2 Median 0.83243 0.76861 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76948 0.72946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59785000 32962000 26823000 55595000 30832000 24762000 0 0 0 4190900 2129600 2061400 0 0 0 0 0 0 0 0 0 992 1912 1030 4869;4870 4986;4987;4988;4989;4990 4987 5 AFLASPEYVNLPINGNGKQ LSAYVGRLSARPKLKAFLASPEYVNLPING SPEYVNLPINGNGKQ_______________ K A F K Q - 2 0 3 0 0 1 1 2 0 1 2 1 0 1 2 1 0 0 1 1 0 0 19 1 2031.0425 P09211;A8MX94 P09211 192 210 GSTP1 Glutathione S-transferase P yes no 2;3 1.6034E-07 68.069 By MS/MS By matching By MS/MS By matching 3 1 2 1 0.7816 0.72167 7.3641 7 Median 0.7816 0.72167 11.201 3 0 Median 0.84561 0.72393 NaN 1 0 Median 0.73905 0.70857 2.0791 2 0 Median 0.92993 0.75215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83828000 45564000 38264000 79200000 42986000 36214000 502120 261770 240350 3959300 2222200 1737000 167120 93575 73542 0 0 0 0 0 0 993 1912 1031 4871;4872;4873;4874;4875;4876;4877 4991;4992;4993;4994;4995;4996 4992 6 AFLDALQNQAEASSK ELVSNLGTIARSGSKAFLDALQNQAEASSK AFLDALQNQAEASSKIIGQFGVGFYSAFMV K A F S K I 4 0 1 1 0 2 1 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 15 0 1591.7842 Q12931 Q12931 182 196 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 3.1116E-08 153.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.2026 1.0588 19.297 6 Median 1.113 1.0037 3.6129 2 0 Median 1.3779 1.1515 NaN 1 0 Median 1.0297 1.0285 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6043 1.6566 NaN 1 0 Median 1.2948 1.0888 NaN 1 0 Median 178490000 81197000 97290000 132200000 61144000 71052000 17653000 7232900 10420000 22664000 10571000 12093000 0 0 0 5071900 1916700 3155200 901520 331720 569800 994 2771 1032 4878;4879;4880;4881;4882;4883 4997;4998;4999;5000;5001;5002;5003;5004 5002 8 AFLDFHALPYQVVEVNPVR TLYQYKTCPFCSKVRAFLDFHALPYQVVEV FHALPYQVVEVNPVRRAEIKFSSYRKVPIL R A F V R R 2 1 1 1 0 1 1 0 1 0 2 0 0 2 2 0 0 0 1 4 0 0 19 0 2213.1633 Q9H7Z7 Q9H7Z7 118 136 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 3 0.00053847 31.818 By MS/MS By MS/MS 1 1 0.93999 0.84462 6.5063 2 Median 0.83098 0.80664 NaN 1 0 Median 1.0633 0.88438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8798700 4227700 4570900 1872900 955270 917590 6925800 3272500 3653300 0 0 0 0 0 0 0 0 0 0 0 0 995 3985 1033 4884;4885 5005;5006 5006 2 AFLDNPTIILAHIR ______________________________ MAFLDNPTIILAHIRQSHVTSDDTGMCEMV M A F I R Q 2 1 1 1 0 0 0 0 1 3 2 0 0 1 1 0 1 0 0 0 0 0 14 0 1592.9039 B1AMB1;B1AMB2;Q9BPZ7 B1AMB1 2 15 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 yes no 2 0.0024045 43.512 By MS/MS By matching By matching 1 1 1 0.95336 0.98695 17.579 3 Median 0.84817 0.86031 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95336 0.98695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.212 1.2196 NaN 1 0 Median NaN NaN NaN 0 0 Median 1506900 721490 785400 1114400 585420 528970 0 0 0 109410 53340 56067 0 0 0 283090 82724 200370 0 0 0 996 572 1034 4886;4887;4888 5007 5007 1 AFLDSLPDVK HIYDNRIVLNGIDLKAFLDSLPDVKIVKMK GIDLKAFLDSLPDVKIVKMKCPDGGDNADS K A F V K I 1 0 0 2 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 10 0 1103.5863 O15294 O15294 743 752 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.0011347 68.224 By MS/MS By matching By matching By matching 2 2 1 2 1.0199 0.88866 30.011 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8455 0.91637 15.584 2 0 Median 1.2983 1.114 37.227 2 0 Median 1.0873 1.1154 NaN 1 0 Median 0.81768 0.69866 34.02 2 0 Median 9412800 4732400 4680500 0 0 0 0 0 0 7187500 3534400 3653100 824730 395230 429500 1035200 591870 443310 365410 210850 154560 997 1537 1035 4889;4890;4891;4892;4893;4894;4895 5008;5009;5010 5010 3 AFLEENNLDYIIR SKRGVSCQFGPDVTKAFLEENNLDYIIRSH TKAFLEENNLDYIIRSHEVKAEGYEVAHGG K A F I R S 1 1 2 1 0 0 2 0 0 2 2 0 0 1 0 0 0 0 1 0 0 0 13 0 1608.8148 P53041;H0YDU8;A8MU39 P53041 413 425 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 2 6.9595E-07 119.68 By MS/MS By MS/MS By matching 3 1 1 1.0555 1.004 12.077 5 Median 1.0555 1.0531 16.814 3 2 Median NaN NaN NaN 0 0 Median 0.91259 0.94664 NaN 1 0 Median 1.1499 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16635000 8456400 8178100 12100000 6287100 5812900 0 0 0 4155100 2002700 2152400 379460 166560 212900 0 0 0 0 0 0 998 1177 1036 4896;4897;4898;4899;4900 5011;5012;5013;5014;5015;5016 5012 6 AFLEILHTYQK NKIKNRFQGQPDIYKAFLEILHTYQKEQRN DIYKAFLEILHTYQKEQRNAKEAGGNYTPA K A F Q K E 1 0 0 0 0 1 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 11 0 1361.7343 Q96ST3 Q96ST3 327 337 SIN3A Paired amphipathic helix protein Sin3a yes yes 2;3 0.00013531 118.26 By matching By MS/MS By matching 1 2 1 1.0533 1.1346 18.423 4 Median 1.2973 1.2229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0533 1.1346 0.5926 2 0 Median NaN NaN NaN 0 0 Median 0.77489 0.81036 NaN 1 0 Median NaN NaN NaN 0 0 Median 15898000 7599100 8298800 1935100 747780 1187300 0 0 0 12913000 6215600 6697500 0 0 0 1049700 635710 414020 0 0 0 999 3737 1037 4901;4902;4903;4904 5017;5018;5019 5017 3 AFLGQVLVR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT AVPLARAFLGQVLVRRLPNGTELRGRIVET R A F V R R 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 2 0 0 9 0 1001.6022 P29372;A2IDA3 P29372 101 109 MPG DNA-3-methyladenine glycosylase yes no 2 0.0014584 81.297 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 1.1803 0.99496 9.9059 8 Median 1.0228 0.96595 NaN 1 0 Median 1.1913 0.99575 NaN 1 0 Median 1.207 1.1585 14.595 2 0 Median 1.1918 0.99416 6.1152 3 0 Median NaN NaN NaN 0 0 Median 1.1181 0.94575 NaN 1 0 Median 48624000 22365000 26260000 5282900 2662600 2620300 3524400 1373800 2150500 31362000 14401000 16961000 7039800 3253500 3786300 0 0 0 1415400 673860 741560 1000 2170 1038 4905;4906;4907;4908;4909;4910;4911;4912 5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030 5023 11 AFLIEEQK GGSMCAKCVRDRIKRAFLIEEQKIVVKVLK VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA R A F Q K I 1 0 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 P49207 P49207 94 101 RPL34 60S ribosomal protein L34 yes yes 2 0.00070426 151.51 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 2 2 1 0.94247 0.89479 65.26 14 Median 1.047 0.97684 26.8 5 0 Median 1.1728 1.0018 40.214 4 1 Median 0.27012 0.26499 133.09 2 0 Median 0.67802 0.55359 80.12 2 0 Median 0.807 0.8253 NaN 1 0 Median NaN NaN NaN 0 0 Median 340230000 168440000 171800000 168820000 81801000 87017000 107650000 49368000 58280000 49715000 28878000 20836000 11451000 6920600 4530400 2601100 1467900 1133100 0 0 0 1001 2373 1039 4913;4914;4915;4916;4917;4918;4919;4920;4921;4922;4923;4924;4925;4926 5031;5032;5033;5034;5035;5036;5037;5038;5039;5040 5031 10 AFLLFPTIER TLQMLKRVPELPVIRAFLLFPTIERMSESP LPVIRAFLLFPTIERMSESPNGRIATPLLC R A F E R M 1 1 0 0 0 0 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 10 0 1205.6808 B5MDU6;Q9H6V9;C9JHU6;C9JUM0;B5MCU4;A0A0A0MSH6 B5MDU6 160 169 LDAH;C2orf43 UPF0554 protein C2orf43 yes no 2 0.011936 41.979 By MS/MS By matching 1 1 1.1212 1.0172 2.1166 2 Median 1.0366 1.0021 NaN 1 0 Median 1.2127 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3033500 1463000 1570500 2239400 1101200 1138200 794080 361810 432270 0 0 0 0 0 0 0 0 0 0 0 0 1002 625 1040 4927;4928 5041;5042 5042 2 AFLNAIMR GGNIEVLGFNARQRKAFLNAIMRYGMPPQD FNARQRKAFLNAIMRYGMPPQDAFTTQWLV K A F M R Y 2 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 8 0 934.50586 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;Q8TDI0;K7EMY3 Q14839 1423 1430 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.0024073 129.96 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 7 2 4 1.0561 1.0359 112.96 18 Median 0.061764 0.05784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94707 1.039 17.956 4 1 Median 1.1188 0.98259 147.42 7 0 Median 1.0339 1.0786 0.98219 2 0 Median 1.2939 1.0697 23.814 4 0 Median 61502000 33131000 28371000 4876300 4630800 245550 0 0 0 32535000 16144000 16391000 7133500 4377100 2756400 14281000 6709600 7571400 2676000 1269500 1406500 1003 246;3471 1041;1042 4929;4930;4931;4932;4933;4934;4935;4936;4937;4938;4939;4940;4941;4942;4943;4944;4945;4946 5043;5044;5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056 5047 98 14 AFLPLLK EDHGYLVDIGVDGTRAFLPLLKAQEYIRQK DIGVDGTRAFLPLLKAQEYIRQKNKGAKLK R A F L K A 1 0 0 0 0 0 0 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 7 0 800.51601 Q14690;A0A3B3IUD7 Q14690 213 219 PDCD11 Protein RRP5 homolog yes no 2 0.029724 50.12 By MS/MS By matching By matching 2 1 1 1.0827 1.1758 5.0244 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0272 1.1348 2.0382 2 0 Median 1.3866 1.255 NaN 1 0 Median 1.1348 1.2008 NaN 1 0 Median NaN NaN NaN 0 0 Median 7601600 3502800 4098900 0 0 0 0 0 0 5265200 2542900 2722300 111710 47613 64098 2224700 912230 1312500 0 0 0 1004 448 1043 4947;4948;4949;4950 5057;5058;5059;5060 5057 4 AFLQENTHVR SWSPCFSWGCAGEVRAFLQENTHVRLRIFA AGEVRAFLQENTHVRLRIFAARIYDYDPLY R A F V R L 1 1 1 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1213.6204 B0QYD3;Q9UH17;P31941 B0QYD3 295 304 APOBEC3B;APOBEC3A DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3A yes no 3 0.030854 32.008 By MS/MS 1 1.17 1.2325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.17 1.2325 NaN 1 1 Median NaN NaN NaN 0 0 Median 4102800 1860800 2242000 0 0 0 0 0 0 0 0 0 0 0 0 4102800 1860800 2242000 0 0 0 1005 555 1044 4951 5061 5061 1 AFLSDMIK LRNSPQCPESMEVRRAFLSDMIKLFNNSRE ESMEVRRAFLSDMIKLFNNSRENRRSLLQC R A F I K L 1 0 0 1 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 8 0 923.47864 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;A0A494C0R9 E9PEM5 841 848 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.053471 34.003 By MS/MS 1 1.0618 1.0545 NaN 1 Median 1.0618 1.0545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4543700 2230200 2313500 4543700 2230200 2313500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1006 470 1045 4952 5062 5062 1 AFLTGVDPILGHQLSAR GPAPLSAQELSQEIKAFLTGVDPILGHQLS LTGVDPILGHQLSAREHARCGLLLLRSLPP K A F A R E 2 1 0 1 0 1 0 2 1 1 3 0 0 1 1 1 1 0 0 1 0 0 17 0 1793.9788 Q6P9B9 Q6P9B9 37 53 INTS5 Integrator complex subunit 5 yes yes 3 0.0068559 24.538 By matching By MS/MS By matching 1 1 1 1.0585 0.93688 1.2811 3 Median NaN NaN NaN 0 0 Median 1.0585 0.93688 NaN 1 0 Median 0.89775 0.95561 NaN 1 0 Median 1.0902 0.93296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8232700 3661400 4571300 0 0 0 563660 275570 288090 6978400 3114700 3863700 690590 271050 419540 0 0 0 0 0 0 1007 3166 1046 4953;4954;4955 5063 5063 1 AFLTLAEDILR RFFETSAKANINIEKAFLTLAEDILRKTPV NIEKAFLTLAEDILRKTPVKEPNSENVDIS K A F L R K 2 1 0 1 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1260.7078 P61026 P61026 162 172 RAB10 Ras-related protein Rab-10 yes yes 2 0.0042699 48.283 By MS/MS By MS/MS By matching 3 6 1 1.1141 1.0812 17.626 10 Median 1.13 1.0931 2.4908 3 0 Median 1.0328 0.88199 17.454 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6162 1.2792 NaN 1 0 Median 24915000 11695000 13220000 18738000 8718400 10020000 6094700 2950100 3144600 0 0 0 0 0 0 0 0 0 81635 26308 55327 1008 2540 1047 4956;4957;4958;4959;4960;4961;4962;4963;4964;4965 5064;5065;5066;5067 5064 4 AFMGPLKK SKFGHGRFQTMEEKKAFMGPLKKDRIAKEE QTMEEKKAFMGPLKKDRIAKEEGA______ K A F K K D 1 0 0 0 0 0 0 1 0 0 1 2 1 1 1 0 0 0 0 0 0 0 8 1 890.50479 P39023;G5E9G0 P39023 387 394 RPL3 60S ribosomal protein L3 yes no 2 0.02061 50.966 By MS/MS By MS/MS By matching 2 3 2 0.98666 0.99312 20.26 7 Median 0.86207 0.90106 13.757 2 0 Median 1.1643 1.0907 10.94 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0931 0.94871 41.792 2 0 Median NaN NaN NaN 0 0 Median 31552000 16433000 15119000 12740000 7197000 5543000 15420000 7637800 7782600 0 0 0 0 0 0 3391600 1597700 1793900 0 0 0 1009 2281 1048 4966;4967;4968;4969;4970;4971;4972 5068;5069;5070;5071;5072;5073;5074 5072 7 AFMGTPVQK MLTPKPAGGDEKDIKAFMGTPVQKLDLAGT DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ K A F Q K L 1 0 0 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 9 0 977.50044 P46013 P46013 1189 1197 MKI67 Antigen KI-67 yes no 2 7.0611E-06 129.4 By MS/MS By MS/MS 4 3 1.1101 1.038 16.454 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.142 1.2351 10.784 3 1 Median 1.0791 0.97686 8.8846 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33873000 16824000 17049000 0 0 0 0 0 0 29302000 14587000 14715000 4570900 2236600 2334300 0 0 0 0 0 0 1010 2335 1049 4973;4974;4975;4976;4977;4978;4979 5075;5076;5077;5078;5079;5080 5075 6 AFMVTDEDIR KNPGVWLNTTQPLCKAFMVTDEDIRKQEEL QPLCKAFMVTDEDIRKQEELVQQVRKRLEE K A F I R K 1 1 0 2 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1195.5543 O95983;K7EIE8 O95983 217 226 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 0.00059334 99.442 By MS/MS By MS/MS By matching By matching 2 2 2 2 1.052 0.94816 15.776 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.963 0.93696 15.185 2 0 Median 1.1388 0.94983 13.754 2 0 Median 0.82725 0.84346 2.4492 2 0 Median 1.4358 1.1952 4.6521 2 0 Median 52438000 26133000 26305000 0 0 0 0 0 0 37056000 18565000 18491000 10675000 5090300 5584600 2571000 1495700 1075300 2136500 982040 1154400 1011 1804 1050;1051 4980;4981;4982;4983;4984;4985;4986;4987 5081;5082;5083;5084;5085;5086 5083 575 6 AFNADFH IGAGTSEVRRLVIGRAFNADFH________ VRRLVIGRAFNADFH_______________ R A F F H - 2 0 1 1 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 820.3504 A0A0S2Z4K7;A0A0A0MT83;P26440 A0A0S2Z4K7 387 393 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2 0.023201 71.995 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3666400 0 0 1460100 0 0 2206300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1012 187 1052 4988;4989 5087;5088 5088 2 AFNSSSFNSNTFLTR VRMAVQDAVDALMQKAFNSSSFNSNTFLTR AFNSSSFNSNTFLTRLLVHMGLLKSEDKVK K A F T R L 1 1 3 0 0 0 0 0 0 0 1 0 0 3 0 4 2 0 0 0 0 0 15 0 1691.7903 P46060 P46060 501 515 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 2.1649E-46 223.71 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 2 2 1.1576 1.0697 24.063 12 Median 1.2783 1.2093 NaN 1 0 Median 1.2862 1.1385 NaN 1 0 Median 1.0891 1.0913 31.751 3 0 Median 1.0286 0.88064 10.861 3 0 Median 1.4422 1.4619 30.158 2 0 Median 1.1376 0.96868 1.5071 2 0 Median 118290000 53378000 64911000 14659000 6255000 8404300 1235900 510660 725190 90115000 40418000 49697000 4745700 2325900 2419800 6813600 3499900 3313800 719470 368410 351060 1013 2336 1053 4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001 5089;5090;5091;5092;5093;5094 5091 6 AFPAWADTSVLSR ATKAEMDAAIASCKRAFPAWADTSVLSRQQ KRAFPAWADTSVLSRQQVLLRYQQLIKENL R A F S R Q 3 1 0 1 0 0 0 0 0 0 1 0 0 1 1 2 1 1 0 1 0 0 13 0 1419.7147 Q02252 Q02252 89 101 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes yes 2 0.017963 32.008 By MS/MS By matching 1 1 1.7817 1.8361 110.38 2 Median 0.84306 0.84124 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.7655 4.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470700 1609100 1861500 2325300 1388900 936480 0 0 0 1145300 220260 925070 0 0 0 0 0 0 0 0 0 1014 2697 1054 5002;5003 5095;5096 5095 2 AFPDSPGLNR LNLTSMLCLTSSVLKAFPDSPGLNRTVVNI SSVLKAFPDSPGLNRTVVNISSLCALQPFK K A F N R T 1 1 1 1 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 10 0 1072.5302 P35270 P35270 141 150 SPR Sepiapterin reductase yes yes 2 0.0049654 51.346 By MS/MS 1 0.83599 0.79175 NaN 1 Median 0.83599 0.79175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8303200 4350400 3952800 8303200 4350400 3952800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1015 2241 1055 5004 5097;5098 5098 2 AFPEHFTYEPNEADAAQGYR LGRYYMSARHMALSKAFPEHFTYEPNEADA FTYEPNEADAAQGYRYPRPASVPPSPSLSR K A F Y R Y 4 1 1 1 0 1 3 1 1 0 0 0 0 2 2 0 1 0 2 0 0 0 20 0 2312.0134 P13807 P13807 616 635 GYS1 Glycogen [starch] synthase, muscle yes yes 3 3.3334E-11 75.239 By MS/MS 1 0.54105 0.51761 NaN 1 Median 0.54105 0.51761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5194200 3203800 1990400 5194200 3203800 1990400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1016 1997 1056 5005 5099;5100 5100 2 AFPHLQQPSFLLASLK ______________________________ FPHLQQPSFLLASLKADSINKPFAQQCQDL M A F L K A 2 0 0 0 0 2 0 0 1 0 4 1 0 2 2 2 0 0 0 0 0 0 16 0 1795.9985 C9J647;F8WF03;F2Z2I0;F2Z2W5 C9J647 2 17 SMPD4 yes no 2 0.00014043 58.676 By MS/MS By matching By matching 1 1 2 1.0091 0.87899 5.1566 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87189 0.95672 NaN 1 0 Median 1.014 0.89432 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.028 0.85822 0.93704 2 0 Median 7753300 3960400 3793000 0 0 0 0 0 0 7083800 3631300 3452500 327790 161000 166790 0 0 0 341790 168070 173720 1017 678 1057 5006;5007;5008;5009 5101 5101 1 AFPMPGFDEH QRLANLRQRVEQFARAFPMPGFDEH_____ EQFARAFPMPGFDEH_______________ R A F E H - 1 0 0 1 0 0 1 1 1 0 0 0 1 2 2 0 0 0 0 0 0 0 10 0 1146.4804 P34897 P34897 495 504 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.0094587 58.981 By MS/MS By MS/MS 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19372000 0 0 0 0 0 0 0 0 10796000 0 0 8575900 0 0 0 0 0 0 0 0 1018 2228 1058;1059 5010;5011;5012;5013 5102;5103;5104;5105 5105 966 4 AFPNPYADYNK ______________________________ MAQRAFPNPYADYNKSLAEGYFDAAGRLTP R A F N K S 2 0 2 1 0 0 0 0 0 0 0 1 0 1 2 0 0 0 2 0 0 0 11 0 1298.5932 O43813;E9PHS0;F8WDS9 O43813 5 15 LANCL1 LanC-like protein 1 yes no 2 0.058821 43.282 By MS/MS 1 0.60122 0.55724 NaN 1 Median 0.60122 0.55724 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12120000 7346300 4773400 12120000 7346300 4773400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1019 936 1060 5014 5106 5106 1 AFPVLLLDTVPWYLR KGELSTLLYNTHPYRAFPVLLLDTVPWYLR AFPVLLLDTVPWYLRLYVHTLTITSKGKEN R A F L R L 1 1 0 1 0 0 0 0 0 0 4 0 0 1 2 0 1 1 1 2 0 0 15 0 1802.0131 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPR6;A0A1W2PPK4;A0A1W2PPQ7;A0A1W2PSC5;A0A1W2PQ52;A0A1W2PRZ8 Q969N2 380 394 PIGT GPI transamidase component PIG-T yes no 2 0.049451 23.236 By MS/MS 1 0.78095 0.80444 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78095 0.80444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 549910 312900 237010 0 0 0 0 0 0 549910 312900 237010 0 0 0 0 0 0 0 0 0 1020 331 1061 5015 5107 5107 1 AFQAAFR VQEVLSIKHLPPQLRAFQAAFRAQGPLAML KHLPPQLRAFQAAFRAQGPLAMLQHFDTIY R A F F R A 3 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 809.41842 Q15021;E7EN77;F5GZK7;F5H431 Q15021 43 49 NCAPD2 Condensin complex subunit 1 yes no 2 0.014239 74.832 By MS/MS By MS/MS 1 1 0.96953 0.89956 2.6146 2 Median 0.90138 0.88308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0428 0.91634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881700 2022800 1858900 3256300 1726100 1530200 0 0 0 0 0 0 625370 296670 328700 0 0 0 0 0 0 1021 2915 1062 5016;5017 5108;5109;5110 5109 3 AFQEGIAK AEEERIRKHKAAAEKAFQEGIAKAKLVMRR HKAAAEKAFQEGIAKAKLVMRRTPIGTDRN K A F A K A 2 0 0 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 862.45487 Q9UIG0 Q9UIG0 886 893 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.046072 53.554 By MS/MS 1 0.82205 0.86025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82205 0.86025 NaN 1 1 Median NaN NaN NaN 0 0 Median 7055400 3761600 3293700 0 0 0 0 0 0 0 0 0 0 0 0 7055400 3761600 3293700 0 0 0 1022 4290 1063 5018 5111 5111 1 AFQIMQEELR HPLKAQLQEYQDKTKAFQIMQEELRQENLS QDKTKAFQIMQEELRQENLSWQHELHQLRM K A F L R Q 1 1 0 0 0 2 2 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 10 0 1263.6282 Q14789 Q14789 2930 2939 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.00040525 122.52 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2083 1.0954 6.9616 4 Median 1.1454 1.12 NaN 1 0 Median 1.2746 1.0715 NaN 1 0 Median 0.95113 1.0693 NaN 1 0 Median 1.4308 1.2407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19806000 8836100 10969000 12943000 6002200 6940700 5289200 2263400 3025800 1409700 506790 902930 163830 63725 100110 0 0 0 0 0 0 1023 2900 1064 5019;5020;5021;5022 5112;5113;5114;5115 5113 4 AFQNVFAPR PAPHSPWTAAPQYQKAFQNVFAPRNKNFNI APQYQKAFQNVFAPRNKNFNIHGTNKHWLI K A F P R N 2 1 1 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 9 0 1048.5454 P15586;H7C3P4;F6S8M0;H0YFA9;F5H4C6 P15586 247 255 GNS N-acetylglucosamine-6-sulfatase yes no 2 0.0001032 117.93 By MS/MS By matching By matching By matching 3 1 3 1 0.99204 0.96361 32.062 8 Median 1.1224 1.0805 39.822 3 1 Median 0.8306 0.718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86721 0.85937 24.758 3 0 Median 1.6058 1.3877 NaN 1 0 Median 38229000 18858000 19371000 25925000 12522000 13403000 6560200 3702400 2857800 0 0 0 0 0 0 5453500 2538000 2915500 290000 96317 193680 1024 2019 1065 5023;5024;5025;5026;5027;5028;5029;5030 5116;5117;5118 5116 3 AFQQSVEQDNLFDISTEEGSTKR SFPRGGTRKIHKPEKAFQQSVEQDNLFDIS DNLFDISTEEGSTKRKKSQKGPAKTKKLKI K A F K R K 1 1 1 2 0 3 3 1 0 1 1 1 0 2 0 3 2 0 0 1 0 0 23 1 2628.2304 Q14690;A0A3B3IUD7 Q14690 22 44 PDCD11 Protein RRP5 homolog yes no 3 1.7331E-16 71.592 By MS/MS 1 1.0822 1.2973 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0822 1.2973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10222000 5243200 4978400 0 0 0 0 0 0 10222000 5243200 4978400 0 0 0 0 0 0 0 0 0 1025 448 1066 5031 5119;5120 5119 2 AFREEAIK TNETPYFMKSIDCIRAFREEAIKFSEEQRF KSIDCIRAFREEAIKFSEEQRFNNFLKALQ R A F I K F 2 1 0 0 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 1 962.51853 P13010 P13010 641 648 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.022094 80.229 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.0177 1.0446 19.84 5 Median 1.0177 1.0446 NaN 1 0 Median 1.3009 1.2863 NaN 1 0 Median 0.8006 0.8818 19.911 2 0 Median 1.2719 1.1905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53193000 25366000 27827000 7507200 3757400 3749800 21334000 9304300 12030000 18292000 9656900 8634700 6060100 2647600 3412500 0 0 0 0 0 0 1026 1986 1067 5032;5033;5034;5035;5036 5121;5122;5123 5122 3 AFREEAIKFSEEQR TNETPYFMKSIDCIRAFREEAIKFSEEQRF RAFREEAIKFSEEQRFNNFLKALQEKVEIK R A F Q R F 2 2 0 0 0 1 4 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 14 2 1738.8638 P13010 P13010 641 654 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3;4 5.0165E-05 79.639 By MS/MS 2 1.1321 1.142 8.4686 2 Median 1.1321 1.142 8.4686 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22407000 10519000 11888000 22407000 10519000 11888000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1027 1986 1068 5037;5038 5124;5125;5126 5126 3 AFREEFGAEPELAVSAPGR LRQPQVAELLAEARRAFREEFGAEPELAVS EFGAEPELAVSAPGRVNLIGEHTDYNQGLV R A F G R V 4 2 0 0 0 0 4 2 0 0 1 0 0 2 2 1 0 0 0 1 0 0 19 1 2032.0014 P51570;K7ERJ9 P51570 19 37 GALK1 Galactokinase yes no 3 4.1859E-05 43.696 By MS/MS By matching By MS/MS 1 1 1 0.59427 0.60909 26.612 3 Median 0.47506 0.49985 NaN 1 0 Median 0.90643 0.84649 NaN 1 0 Median 0.59427 0.60909 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11447000 7415800 4030800 4298100 2963700 1334400 770150 412140 358010 6378400 4040000 2338400 0 0 0 0 0 0 0 0 0 1028 2434 1069 5039;5040;5041 5127;5128 5127 2 AFSAFVGQMHQQGILK VNLYHSAAAGRDSTKAFSAFVGQMHQQGIL FSAFVGQMHQQGILKTDDLITRFFRLCTEM K A F L K T 2 0 0 0 0 3 0 2 1 1 1 1 1 2 0 1 0 0 0 1 0 0 16 0 1760.9032 A5YKK6 A5YKK6 1875 1890 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.00077342 36.445 By MS/MS By matching By matching By matching 1 1 1 1 1.624 1.4445 28.234 4 Median 1.0485 1.0099 NaN 1 0 Median 1.5832 1.3757 NaN 1 0 Median 1.6659 2.0019 NaN 1 0 Median 1.6761 1.5168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9858700 4080500 5778100 6665900 2973500 3692400 851530 292070 559460 2224000 766480 1457500 117250 48439 68807 0 0 0 0 0 0 1029 503 1070 5042;5043;5044;5045 5129;5130 5130 2 AFSAVDTDGNGTINAQELGAALK MAGELTPEEEAQYKKAFSAVDTDGNGTINA GNGTINAQELGAALKATGKNLSEAQLRKLI K A F L K A 5 0 2 2 0 1 1 3 0 1 2 1 0 1 0 1 2 0 0 1 0 0 23 0 2262.1128 Q9NZT1 Q9NZT1 16 38 CALML5 Calmodulin-like protein 5 yes yes 2 0.030035 25.647 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 796350 796350 0 0 0 0 0 0 0 0 0 0 0 0 0 796350 796350 0 0 0 0 1030 4194 1071 5046 5131 5131 1 AFSDPFVEAEK NAKNTVQGFKRFHGRAFSDPFVEAEKSNLA FHGRAFSDPFVEAEKSNLAYDIVQLPTGLT R A F E K S 2 0 0 1 0 0 2 0 0 0 0 1 0 2 1 1 0 0 0 1 0 0 11 0 1238.5819 P34932;A0A087WYC1;A0A087WTS8 P34932 74 84 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.0003569 71.349 By MS/MS By MS/MS 1 3 1.0542 0.95129 5.3912 4 Median 1.0166 0.97854 NaN 1 0 Median 1.0895 0.9248 5.6814 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36315000 17921000 18394000 25576000 12719000 12857000 10739000 5202400 5536600 0 0 0 0 0 0 0 0 0 0 0 0 1031 2230 1072 5047;5048;5049;5050 5132;5133;5134;5135 5133 4 AFSEIQGLTDQADK LLHSSKVSKSLILTRAFSEIQGLTDQADKL RAFSEIQGLTDQADKLIGQKNLLTRKRNIL R A F D K L 2 0 0 2 0 2 1 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 14 0 1521.7311 Q8IWI9;H3BU53 Q8IWI9 2467 2480 MGA MAX gene-associated protein yes no 2 0.0010179 51.927 By MS/MS 1 0.76311 0.83871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76311 0.83871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1590700 715780 874900 0 0 0 0 0 0 1590700 715780 874900 0 0 0 0 0 0 0 0 0 1032 3325 1073 5051 5136 5136 1 AFSGYLGTDQSK FAPICNPVLCPWGKKAFSGYLGTDQSKWKA GKKAFSGYLGTDQSKWKAYDATHLVKSYPG K A F S K W 1 0 0 1 0 1 0 2 0 0 1 1 0 1 0 2 1 0 1 0 0 0 12 0 1272.5986 P10768;X6RA14;H7BZT7;U3KQT1 P10768 187 198 ESD S-formylglutathione hydrolase yes no 2 7.8154E-06 137.98 By MS/MS By MS/MS By MS/MS 1 1 1 1.2002 1.0448 1.4347 2 Median 1.1443 1.0343 NaN 1 0 Median 1.2588 1.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149110000 68436000 80671000 122470000 56745000 65726000 23358000 10300000 13058000 0 0 0 3278600 1391500 1887200 0 0 0 0 0 0 1033 1946 1074 5052;5053;5054 5137;5138;5139;5140;5141 5139 5 AFSHSSNLILHQR IHTGEKPHECNECGKAFSHSSNLILHQRIH GKAFSHSSNLILHQRIHSGEKPYECNECGK K A F Q R I 1 1 1 0 0 1 0 0 2 1 2 0 0 1 0 3 0 0 0 0 0 0 13 0 1508.7848 B3KRF7;E9PC66;P17029 B3KRF7 228 240 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 3 0.0064223 28.976 By MS/MS 1 1.0296 1.1013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0296 1.1013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2561100 1061100 1500000 0 0 0 0 0 0 2561100 1061100 1500000 0 0 0 0 0 0 0 0 0 1034 583 1075 5055 5142 5142 1 AFSIDIIR RLEQDQTTAQLQVQKAFSIDIIRHKDSMDE AQLQVQKAFSIDIIRHKDSMDELFSHRSEI K A F I R H 1 1 0 1 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 8 0 933.52837 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5820 5827 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0034744 94.006 By MS/MS By MS/MS By matching 1 1 1 1.2706 1.1505 12.289 2 Median 1.0627 1.0547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5192 1.2549 NaN 1 0 Median 7031500 3252400 3779100 6968100 3231600 3736500 0 0 0 0 0 0 0 0 0 0 0 0 63404 20822 42582 1035 1220 1076 5056;5057;5058 5143;5144;5145 5144 3 AFSITQGLLK GEHPPDLDLPENLVRAFSITQGLLKDRLLC ENLVRAFSITQGLLKDRLLCSGHDVSDGGL R A F L K D 1 0 0 0 0 1 0 1 0 1 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1076.623 O15067;J3KTQ5 O15067 891 900 PFAS Phosphoribosylformylglycinamidine synthase yes no 2 0.013414 40.067 By MS/MS By matching By matching 2 2 1 1.1232 0.99544 10.723 5 Median 1.0666 1.0369 5.7757 2 0 Median 1.252 1.1025 16.899 2 0 Median 0.89175 0.95431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10961000 5259300 5701800 7141600 3482200 3659400 3262700 1494300 1768400 556850 282850 274000 0 0 0 0 0 0 0 0 0 1036 1518 1077 5059;5060;5061;5062;5063 5146;5147;5148;5149 5146 4 AFSLNSNLVLHQR IHTGEKPYECSECGKAFSLNSNLVLHQRIH GKAFSLNSNLVLHQRIHTGEKPHECNECGK K A F Q R I 1 1 2 0 0 1 0 0 1 0 3 0 0 1 0 2 0 0 0 1 0 0 13 0 1497.8052 B3KRF7;E9PC66;P17029 B3KRF7 200 212 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 3 0.0096684 41.401 By MS/MS 1 1.2124 1.2846 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2124 1.2846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3267600 1320600 1946900 0 0 0 0 0 0 3267600 1320600 1946900 0 0 0 0 0 0 0 0 0 1037 583 1078 5064 5150 5150 1 AFSPTTVNTGR SLFIATNICETIVWKAFSPTTVNTGRGMEF IVWKAFSPTTVNTGRGMEFEGAIIALFHLL K A F G R G 1 1 1 0 0 0 0 1 0 0 0 0 0 1 1 1 3 0 0 1 0 0 11 0 1149.5778 B4DR61;P61619 B4DR61 201 211 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 yes no 2 0.00021904 74.165 By MS/MS 2 0.729 0.59884 31.707 2 Median NaN NaN NaN 0 0 Median 0.729 0.59884 31.707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13508000 7260300 6247400 0 0 0 13508000 7260300 6247400 0 0 0 0 0 0 0 0 0 0 0 0 1038 601 1079 5065;5066 5151;5152 5151 2 AFSQFVR HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YRTLTNYKAFSQFVRPLIAAKNPKIAVSKM K A F V R P 1 1 0 0 0 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 7 0 853.44464 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839 180 186 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.020325 79.454 By MS/MS By MS/MS By matching 2 2 1 1.1391 1.0174 9.8581 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90398 0.99857 NaN 1 1 Median 1.2522 1.0944 7.6701 2 0 Median NaN NaN NaN 0 0 Median 1.0985 0.91047 NaN 1 0 Median 7927900 3784700 4143200 0 0 0 0 0 0 4306400 2188600 2117800 3220700 1401800 1818900 0 0 0 400780 194220 206560 1039 246 1080 5067;5068;5069;5070;5071 5153;5154;5155;5156 5153 4 AFSQFVRPLIAAK HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YKAFSQFVRPLIAAKNPKIAVSKMMMVLGA K A F A K N 3 1 0 0 0 1 0 0 0 1 1 1 0 2 1 1 0 0 0 1 0 0 13 1 1446.8347 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839 180 192 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 1.94E-32 217.02 By MS/MS By matching By MS/MS By matching 8 5 7 5 0.99908 1.0745 10.719 25 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90172 1.052 11.608 8 0 Median 1.3362 1.187 11.389 5 0 Median 0.92042 1.0195 6.1466 7 0 Median 1.2198 1.0879 3.559 5 0 Median 128880000 65366000 63513000 0 0 0 0 0 0 96400000 49253000 47146000 923560 388830 534730 29314000 14666000 14648000 2241100 1057600 1183500 1040 246 1081 5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095;5096 5157;5158;5159;5160;5161;5162;5163;5164;5165;5166 5161 10 AFSQNSGLINHQR VHTGEKPYKCLECGKAFSQNSGLINHQRIH GKAFSQNSGLINHQRIHTGEKPYECVQCGK K A F Q R I 1 1 2 0 0 2 0 1 1 1 1 0 0 1 0 2 0 0 0 0 0 0 13 0 1470.7328 P17028 P17028 315 327 ZNF24 Zinc finger protein 24 yes yes 3 1.5671E-05 86.911 By MS/MS By MS/MS 1 2 1.2034 1.0629 10.085 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1714 1.1757 NaN 1 0 Median 1.2144 1.0106 7.1309 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9107100 3941800 5165300 0 0 0 0 0 0 4226000 2002300 2223700 4881100 1939500 2941600 0 0 0 0 0 0 1041 2034 1082 5097;5098;5099 5167;5168 5168 2 AFSQNTGLILHQR IHNKVKRYHCKECGKAFSQNTGLILHQRIH GKAFSQNTGLILHQRIHTGEKPYQCNQCGK K A F Q R I 1 1 1 0 0 2 0 1 1 1 2 0 0 1 0 1 1 0 0 0 0 0 13 0 1483.7896 Q15776 Q15776 386 398 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 3 0.01326 39.006 By MS/MS 2 0.93303 0.96895 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93303 0.96895 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5918500 3255700 2662800 0 0 0 0 0 0 5918500 3255700 2662800 0 0 0 0 0 0 0 0 0 1042 2970 1083 5100;5101 5169;5170 5169 2 AFSQSAGLILHQR IHTGEKPYQCNQCGKAFSQSAGLILHQRIH GKAFSQSAGLILHQRIHSGERPYECNECGK K A F Q R I 2 1 0 0 0 2 0 1 1 1 2 0 0 1 0 2 0 0 0 0 0 0 13 0 1426.7681 Q15776 Q15776 414 426 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 3 0.0032296 49.423 By MS/MS 1 6.3374 6.4294 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.3374 6.4294 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16372000 1788600 14583000 0 0 0 0 0 0 16372000 1788600 14583000 0 0 0 0 0 0 0 0 0 1043 2970 1084 5102 5171 5171 1 AFSQSSDLIR VHSGERPYKCDDCGKAFSQSSDLIRHQRTH DDCGKAFSQSSDLIRHQRTHAAGRR_____ K A F I R H 1 1 0 1 0 1 0 0 0 1 1 0 0 1 0 3 0 0 0 0 0 0 10 0 1122.5669 H3BS42;Q9H5H4 H3BS42 490 499 ZNF768 Zinc finger protein 768 yes no 2 0.00058909 114.89 By MS/MS 1 0.72372 0.73439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72372 0.73439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15997000 8411400 7585300 0 0 0 0 0 0 15997000 8411400 7585300 0 0 0 0 0 0 0 0 0 1044 1232 1085 5103 5172 5172 1 AFSTVPLTPVPRPSDSVSSTPAATSTPSK GGSLKVTILQSSDSRAFSTVPLTPVPRPSD DSVSSTPAATSTPSKQALQFFCYICKASCS R A F S K Q 3 1 0 1 0 0 0 0 0 0 1 1 0 1 6 7 5 0 0 3 0 0 29 1 2884.4818 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3;A0A494C0L7 H0Y5D5 482 510 CIZ1 Cip1-interacting zinc finger protein yes no 3 3.9825E-09 44.811 By MS/MS 1 0.34609 0.39203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34609 0.39203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5957100 4494000 1463200 0 0 0 0 0 0 5957100 4494000 1463200 0 0 0 0 0 0 0 0 0 1045 1028 1086 5104 5173 5173 1 AFSVFLFNTENK NCHLNENIEKGLLHRAFSVFLFNTENKLLL LHRAFSVFLFNTENKLLLQQRSDAKITFPG R A F N K L 1 0 2 0 0 0 1 0 0 0 1 1 0 3 0 1 1 0 0 1 0 0 12 0 1415.7085 Q13907;C9JD53 Q13907 53 64 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 yes no 2 0.00062607 65.535 By MS/MS By matching 1 1 1.1212 1.059 20.43 2 Median 0.9849 0.91655 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2764 1.2236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18108000 8368400 9739400 16620000 7660600 8959300 0 0 0 1487900 707800 780110 0 0 0 0 0 0 0 0 0 1046 2846 1087 5105;5106 5174;5175 5175 2 AFSYYGPLR VGNLGTGAGKGELERAFSYYGPLRTVWIAR KGELERAFSYYGPLRTVWIARNPPGFAFVE R A F L R T 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 2 0 0 0 9 0 1072.5342 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 30 38 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 5.7393E-05 151.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 11 6 1.0068 0.90433 24.128 29 Median 0.78663 0.7507 13.654 2 0 Median 1.1611 0.96176 61.01 4 0 Median 0.92541 0.91551 15.19 4 0 Median 1.0718 0.86912 2.1835 2 0 Median 0.95641 0.98805 13.569 11 0 Median 1.1044 0.88486 5.5766 6 0 Median 885970000 450200000 435760000 46557000 26886000 19670000 24641000 13988000 10652000 67243000 35959000 31284000 31850000 14962000 16889000 577170000 292410000 284760000 138510000 66002000 72510000 1047 214 1088 5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135 5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201;5202;5203;5204;5205;5206;5207;5208;5209;5210;5211;5212;5213;5214;5215;5216;5217;5218;5219 5188 44 AFTEAATGSSADFVK TLSKCGLVMLNNLVKAFTEAATGSSADFVK AFTEAATGSSADFVKDLAPFMILNSLGLTI K A F V K D 4 0 0 1 0 0 1 1 0 0 0 1 0 2 0 2 2 0 0 1 0 0 15 0 1500.7096 Q96RL7;H0Y7P8 Q96RL7 1859 1873 VPS13A Vacuolar protein sorting-associated protein 13A yes no 2 1.057E-09 106.49 By MS/MS 1 1.552 1.3552 NaN 1 Median NaN NaN NaN 0 0 Median 1.552 1.3552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5337900 2002000 3335900 0 0 0 5337900 2002000 3335900 0 0 0 0 0 0 0 0 0 0 0 0 1048 3726 1089 5136 5220 5220 1 AFTELQAK ______________________________ VDLELKKAFTELQAKVIDTQQKVKLADIQI K A F A K V 2 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 906.48108 O60925;E5RGS4 O60925 12 19 PFDN1 Prefoldin subunit 1 yes no 2 0.0025421 107.43 By MS/MS By MS/MS By MS/MS 1 2 2 1.3678 1.129 121.72 5 Median 1.2425 1.129 NaN 1 0 Median 5.4696 4.5174 196.7 2 0 Median NaN NaN NaN 0 0 Median 2.007 1.6432 64.335 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41736000 16920000 24816000 14057000 6245600 7810900 25876000 10002000 15874000 0 0 0 1803900 672800 1131100 0 0 0 0 0 0 1049 841 1090 5137;5138;5139;5140;5141 5221;5222;5223 5222 3 AFTGFIVEADTPGIQIGR LLARSDPDPKAPANKAFTGFIVEADTPGIQ GFIVEADTPGIQIGRKELNMGQRCSDTRGI K A F G R K 2 1 0 1 0 1 1 3 0 3 0 0 0 2 1 0 2 0 0 1 0 0 18 0 1890.984 B7Z9I1;Q5T4U5;P11310 B7Z9I1 182 199 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.027054 34.685 By MS/MS 1 1.2358 1.0677 NaN 1 Median NaN NaN NaN 0 0 Median 1.2358 1.0677 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3193400 1254500 1938900 0 0 0 3193400 1254500 1938900 0 0 0 0 0 0 0 0 0 0 0 0 1050 639 1091 5142 5224 5224 1 AFTHTAQYDEAISDYFR SKDTSLETRRQLALKAFTHTAQYDEAISDY THTAQYDEAISDYFRKQYSKGVSQMPLRYG K A F F R K 3 1 0 2 0 1 1 0 1 1 0 0 0 2 0 1 2 0 2 0 0 0 17 0 2033.9119 P31939;C9JLK0 P31939 178 194 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2;3 9.802E-14 143.88 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1478 1.0077 13.634 5 Median 1.0309 0.99772 1.4102 2 0 Median 1.1478 0.99327 NaN 1 0 Median 1.2611 1.31 NaN 1 0 Median 1.4387 1.239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45041000 21213000 23828000 34048000 15890000 18158000 6817400 3166600 3650700 3960600 2052400 1908200 214960 103670 111290 0 0 0 0 0 0 1051 2207 1092 5143;5144;5145;5146;5147 5225;5226;5227;5228;5229;5230 5225 6 AFTHTAQYDEAISDYFRK SKDTSLETRRQLALKAFTHTAQYDEAISDY HTAQYDEAISDYFRKQYSKGVSQMPLRYGM K A F R K Q 3 1 0 2 0 1 1 0 1 1 0 1 0 2 0 1 2 0 2 0 0 0 18 1 2162.0069 P31939;C9JLK0 P31939 178 195 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3;4 3.3616E-12 107.98 By MS/MS 2 1.1014 1.1053 3.5721 2 Median 1.1014 1.1053 3.5721 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17931000 8864000 9067000 17931000 8864000 9067000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1052 2207 1093 5148;5149 5231;5232;5233;5234 5232 4 AFTNTATATEEDVK ETGPGNLIDPIHEFKAFTNTATATEEDVKM KAFTNTATATEEDVKMKFSNEVFRFASACM K A F V K M 3 0 1 1 0 0 2 0 0 0 0 1 0 1 0 0 4 0 0 1 0 0 14 0 1496.6995 Q5K651;C9JKF1 Q5K651 199 212 SAMD9 Sterile alpha motif domain-containing protein 9 yes no 2 0.00035475 72.531 By MS/MS By MS/MS 1 1 0.93233 0.82636 25.519 2 Median NaN NaN NaN 0 0 Median 0.79409 0.68992 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0946 0.98977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470300 1591700 1878600 0 0 0 843640 344900 498740 0 0 0 2626700 1246800 1379900 0 0 0 0 0 0 1053 3063 1094 5150;5151 5235;5236 5236 2 AFTQLSNLQSHR TGDRPYKCAHPGCEKAFTQLSNLQSHRRQH CEKAFTQLSNLQSHRRQHNKDKPFKCHNCH K A F H R R 1 1 1 0 0 2 0 0 1 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7161 Q8TF68 Q8TF68 383 394 ZNF384 Zinc finger protein 384 yes yes 2;3 1.342E-06 102.06 By MS/MS By MS/MS By matching By matching 4 2 1 1 1.1113 1.0157 42.751 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96405 0.99995 37.636 4 2 Median 1.37 1.1643 16.722 2 1 Median 0.36733 0.39208 NaN 1 0 Median 1.1963 0.99719 NaN 1 0 Median 30582000 14793000 15789000 0 0 0 0 0 0 24377000 11744000 12633000 2901000 1155100 1745900 1762500 1223500 539010 1541300 670290 870990 1054 3483 1095 5152;5153;5154;5155;5156;5157;5158;5159 5237;5238;5239;5240;5241;5242;5243;5244 5238 8 AFTTTLNLLPYHK SPLLADCIIPITDIRAFTTTLNLLPYHKIV IRAFTTTLNLLPYHKIVK____________ R A F H K I 1 0 1 0 0 0 0 0 1 0 3 1 0 1 1 0 3 0 1 0 0 0 13 0 1517.8242 O43847;G3V1R5;H0Y5G9 O43847 1136 1148 NRD1 Nardilysin yes no 3 0.043041 15.941 By MS/MS 1 1.2324 1.2116 NaN 1 Median 1.2324 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3872200 2107600 1764600 3872200 2107600 1764600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1055 1597 1096 5160 5245;5246 5246 2 AFTYINLDK ATEWLEGYLSSLHLKAFTYINLDKAVLGTS SSLHLKAFTYINLDKAVLGTSNFKVSASPL K A F D K A 1 0 1 1 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1083.5601 P02786;G3V0E5 P02786 478 486 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.010951 71.692 By MS/MS 3 1.3759 1.2956 13.258 2 Median 1.3759 1.2956 13.258 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16033000 6783800 9248800 16033000 6783800 9248800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1056 1836 1097 5161;5162;5163 5247;5248;5249 5249 3 AFTYTVAASGGGGVNMGSHQK GGVDNLHVLDFQKYKAFTYTVAASGGGGVN AASGGGGVNMGSHQKWKVGEIEFEGLMRTL K A F Q K W 3 0 1 0 0 1 0 5 1 0 0 1 1 1 0 2 2 0 1 2 0 0 21 0 2038.9531 Q9UEY8 Q9UEY8 343 363 ADD3 Gamma-adducin yes yes 3 1.3012E-18 109.03 By MS/MS By MS/MS 1 1 0.89346 0.8351 1.7385 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84053 0.84543 NaN 1 0 Median 0.94971 0.82489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16903000 9609400 7293700 0 0 0 0 0 0 15439000 8833200 6606300 1463600 776190 687400 0 0 0 0 0 0 1057 4257 1098 5164;5165 5250;5251 5250 2 AFVAGVLPFK INLTERGCVTKIYGRAFVAGVLPFKVAKDM KIYGRAFVAGVLPFKVAKDMAAAAVRCIRK R A F F K V 2 0 0 0 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 2 0 0 10 0 1047.6117 O00442 O00442 196 205 RTCA RNA 3-terminal phosphate cyclase yes yes 2 0.00040547 77.058 By MS/MS By MS/MS By matching 1 2 1 0.89475 0.88637 27.449 4 Median 0.91706 0.85626 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6913 0.69889 38.495 2 0 Median 1.1428 0.96902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18108000 9116200 8991400 7682800 4102400 3580500 0 0 0 6334600 3124900 3209600 4090200 1888900 2201300 0 0 0 0 0 0 1058 1464 1099 5166;5167;5168;5169 5252;5253;5254;5255 5253 4 AFVAIGDYNGHVGLGVK PVQKQTRAGQRTRFKAFVAIGDYNGHVGLG VAIGDYNGHVGLGVKCSKEVATAIRGAIIL K A F V K C 2 0 1 1 0 0 0 4 1 1 1 1 0 1 0 0 0 0 1 3 0 0 17 0 1715.8995 P15880;H0YEN5;E9PMM9;I3L404;E9PPT0;E9PM36 P15880 126 142 RPS2 40S ribosomal protein S2 yes no 2;3 4.8877E-12 143.97 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.072 0.9633 17.777 7 Median 1.0855 0.98264 1.7179 2 0 Median 1.1094 0.9298 5.0067 2 0 Median 1.2257 1.1743 NaN 1 0 Median 1.0213 0.86905 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7838 0.65531 NaN 1 0 Median 185370000 85566000 99802000 143370000 66840000 76526000 36283000 16337000 19946000 4835200 1996000 2839200 270570 120240 150330 0 0 0 612840 272360 340480 1059 2020 1100 5170;5171;5172;5173;5174;5175;5176 5256;5257;5258;5259;5260;5261;5262 5259 7 AFVDFLSDEIKEER ACGCGCGSLHTDGDKAFVDFLSDEIKEERK KAFVDFLSDEIKEERKIQKHKTLPKMSGGW K A F E R K 1 1 0 2 0 0 3 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 14 1 1696.8308 Q07021 Q07021 81 94 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2;3 0.0040236 58.172 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.0337 1.0843 18.332 7 Median 1.0517 1.1037 2.5065 2 0 Median 1.0692 0.96252 35.271 2 0 Median 0.97048 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1364 1.024 24.039 2 0 Median 39021000 16658000 22363000 9157900 4159100 4998800 10872000 4658200 6214300 210900 99021 111880 0 0 0 0 0 0 18780000 7741500 11038000 1060 2729 1101 5177;5178;5179;5180;5181;5182;5183 5263;5264;5265;5266;5267 5266 5 AFVELTK YGKATIEGYYQKLSKAFVELTKQASCSGDE GYYQKLSKAFVELTKQASCSGDEYRSLKVD K A F T K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 806.4538 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27;A0A494C163;A0A494C099;D6RIS6 H0Y987 190 196 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.016334 68.915 By MS/MS By MS/MS By matching 1 1 2 1.7638 1.4307 19.367 3 Plateau 1.1185 1.0602 NaN 1 1 Median 1.302 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8355 1.5091 NaN 1 0 Median 23612000 9369200 14242000 8039000 3317400 4721600 5758600 2376500 3382000 0 0 0 0 0 0 0 0 0 9814000 3675300 6138700 1061 1165 1102 5184;5185;5186;5187 5268;5269;5270 5269 3 AFVHWYVGEGMEEGEFSEAR WARLDHKFDLMYAKRAFVHWYVGEGMEEGE YVGEGMEEGEFSEAREDMAALEKDYEEVGV R A F A R E 2 1 0 0 0 0 5 3 1 0 0 0 1 2 0 1 0 1 1 2 0 0 20 0 2329.011 Q9BQE3;F5H5D3;P68363;P68366;Q71U36;P0DPH8;P0DPH7 P68363 403 422 TUBA1C;TUBA1B;TUBA4A;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 3 7.5797E-19 137.44 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 5 1.1731 1.0408 33.716 14 Median 1.0594 1.0307 4.4928 2 0 Median 1.1587 0.98314 5.4744 2 0 Median 1.1295 1.1333 66.744 3 0 Median 1.3658 1.1936 16.723 2 0 Median NaN NaN NaN 0 0 Median 1.2149 0.98376 8.9837 5 0 Median 97668000 43863000 53804000 12660000 5755500 6904800 23097000 10764000 12333000 58963000 26082000 32880000 754590 332810 421780 0 0 0 2193400 928960 1264400 1062 2633;3212;1034 1103;1104 5188;5189;5190;5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201 5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281 5280 353 11 AFVNYLK NYLNFLAQRGYFKDKAFVNYLKYLLYWKDP QRGYFKDKAFVNYLKYLLYWKDPEYAKYLK K A F L K Y 1 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 7 0 853.46979 Q9Y3C7 Q9Y3C7 47 53 MED31 Mediator of RNA polymerase II transcription subunit 31 yes yes 2 0.019054 61.997 By MS/MS By MS/MS 1 1 1.1346 1.0074 4.1523 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0736 1.0374 NaN 1 0 Median 1.199 0.97821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6134000 2890600 3243400 0 0 0 0 0 0 5195900 2413900 2782000 938170 476740 461430 0 0 0 0 0 0 1063 4419 1105 5202;5203 5282;5283;5284 5282 3 AFVPPLAEDLLAR ESAEQAHEWVKCIAKAFVPPLAEDLLARDF AKAFVPPLAEDLLARDFERLGRLPYKAGLS K A F A R D 3 1 0 1 0 0 1 0 0 0 3 0 0 1 2 0 0 0 0 1 0 0 13 0 1410.7871 E7EU13;Q96P48;A0A0A0MSJ2;F8WBT0;F5GWN4 E7EU13 603 615 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 2 0.0015521 51.927 By MS/MS By matching By matching 2 1 1 0.52991 0.51939 6.8973 4 Median 0.51164 0.5103 6.4098 2 0 Median 0.60108 0.50521 NaN 1 0 Median 0.53136 0.57117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6374800 4284600 2090200 3717400 2608900 1108500 1830200 1057000 773200 827190 618720 208480 0 0 0 0 0 0 0 0 0 1064 893 1106 5204;5205;5206;5207 5285 5285 1 AFVPQLR SVVKVSYKGSPAARRAFVPQLRSGKFNVLL KGSPAARRAFVPQLRSGKFNVLLTTYEYII R A F L R S 1 1 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 0 829.48102 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 843 849 SMARCA4 Transcription activator BRG1 yes no 2 0.0021317 113.82 By MS/MS By MS/MS By matching 2 1 1 0.80921 0.86567 9.8078 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7669 0.83706 3.0828 2 0 Median 1.1665 1.0257 NaN 1 0 Median 0.83425 0.87594 NaN 1 0 Median NaN NaN NaN 0 0 Median 25504000 13690000 11814000 0 0 0 0 0 0 19618000 10947000 8671200 3374900 1527900 1846900 2511300 1215500 1295800 0 0 0 1065 366 1107 5208;5209;5210;5211 5286;5287;5288 5286 3 AFVRPSGTEDVVR QEAINDLVKKYKLSRAFVRPSGTEDVVRVY SRAFVRPSGTEDVVRVYAEADSQGSRLVVW R A F V R V 1 2 0 1 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 3 0 0 13 1 1431.747 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27;H0Y8I3 H0Y987 493 505 PGM3 Phosphoacetylglucosamine mutase yes no 2;3 7.3384E-09 131.82 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.91581 0.83174 42.353 7 Median 1.1304 1.1137 6.3438 2 1 Median 1.1262 1.0228 41.524 3 0 Plateau NaN NaN NaN 0 0 Median 0.55297 0.51524 NaN 1 0 Median 0.44242 0.44317 NaN 1 0 Median NaN NaN NaN 0 0 Median 147890000 74053000 73842000 85869000 45175000 40695000 52061000 23087000 28974000 0 0 0 1419600 851250 568300 8544900 4940500 3604400 0 0 0 1066 1165 1108 5212;5213;5214;5215;5216;5217;5218;5219 5289;5290;5291;5292;5293;5294;5295 5291 7 AFVSMVYSEEGAEDR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR AFVSMVYSEEGAEDRTFARVIVGGSSEYKI R A F D R T 2 1 0 1 0 0 3 1 0 0 0 0 1 1 0 2 0 0 1 2 0 0 15 0 1688.7352 Q14683;G8JLG1;H0Y7K8 Q14683 78 92 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 2.0697E-19 188.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 1 1.0239 1.0085 12.869 11 Median 0.98692 0.95857 28.327 2 0 Median NaN NaN NaN 0 0 Median 0.88374 0.97153 5.2859 2 0 Median 1.266 1.1135 7.8121 3 0 Median 0.89649 0.92544 9.2248 3 0 Median 1.1713 0.9542 NaN 1 0 Median 73008000 35865000 37143000 9168100 4263500 4904700 0 0 0 40122000 19542000 20580000 4988500 2181000 2807500 17755000 9463800 8291000 975250 415320 559930 1067 2889 1109;1110 5220;5221;5222;5223;5224;5225;5226;5227;5228;5229;5230 5296;5297;5298;5299;5300;5301;5302;5303;5304;5305;5306;5307;5308 5297 1576 13 AFVSMVYSEEGAEDRTFAR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR MVYSEEGAEDRTFARVIVGGSSEYKINNKV R A F A R V 3 2 0 1 0 0 3 1 0 0 0 0 1 2 0 2 1 0 1 2 0 0 19 1 2163.9895 Q14683;G8JLG1;H0Y7K8 Q14683 78 96 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 4.0663E-19 153.95 By MS/MS By matching 1 1 0.73789 0.77371 50.52 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90932 1.1059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59879 0.5413 NaN 1 0 Median 10971000 4914600 6056000 0 0 0 0 0 0 10765000 4798400 5967100 0 0 0 0 0 0 205030 116160 88865 1068 2889 1111 5231;5232 5309;5310 5309 2 AFYGDTLVTGFAR VIARIVDGSRFTEFKAFYGDTLVTGFARIF FKAFYGDTLVTGFARIFGYPVGIVGNNGVL K A F A R I 2 1 0 1 0 0 0 2 0 0 1 0 0 2 0 0 2 0 1 1 0 0 13 0 1416.7038 Q9HCC0 Q9HCC0 349 361 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes yes 2 0.00031274 77.379 By MS/MS By matching By matching 1 1 1 1.3002 1.1462 97.607 3 Median 1.0583 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median 5.6158 5.8818 NaN 1 0 Median 1.3002 1.1462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9243700 2915900 6327800 4700600 2237500 2463100 0 0 0 4376600 605970 3770700 166470 72435 94037 0 0 0 0 0 0 1069 4027 1112 5233;5234;5235 5311;5312 5312 2 AFYPEEISSMVLTK GDKPKVQVSYKGETKAFYPEEISSMVLTKM KAFYPEEISSMVLTKMKEIAEAYLGYPVTN K A F T K M 1 0 0 0 0 0 2 0 0 1 1 1 1 1 1 2 1 0 1 1 0 0 14 0 1613.8011 A0A0G2JIW1;P0DMV9;P0DMV8;Q53FA3;P34931 A0A0G2JIW1 114 127 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2;3 2.5062E-08 124.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 5 8 5 9 6 1.1638 1.0922 34.516 39 Median 1.3845 1.3008 17.076 7 0 Median 1.0704 0.8864 20.215 5 0 Median 1.0885 1.0899 50.14 7 0 Median 1.1192 0.95112 13.235 5 0 Median 1.3325 1.3189 19.235 9 0 Median 1.0631 0.88088 47.424 6 0 Median 606420000 275080000 331340000 261140000 115360000 145780000 110000000 52069000 57927000 143050000 66363000 76688000 38411000 17483000 20928000 43934000 19122000 24811000 9888300 4683800 5204500 1070 278;2229 1113;1114 5236;5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275 5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341;5342;5343;5344;5345;5346;5347;5348;5349;5350;5351;5352;5353 5315 134 41 AFYVNVLNEEQR RRFNTANDDNVTQVRAFYVNVLNEEQRKRL QVRAFYVNVLNEEQRKRLCENIAGHLKDAQ R A F Q R K 1 1 2 0 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 12 0 1480.731 P04040 P04040 445 456 CAT Catalase yes yes 2 0.00059955 71.016 By matching By matching By MS/MS By matching 1 3 1 1 1.0097 0.95012 10.244 6 Median 0.99035 0.92975 NaN 1 0 Median 1.0294 0.86705 15.237 3 0 Median 0.97907 0.97094 NaN 1 0 Median 1.164 0.99756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97070000 48789000 48281000 51269000 25816000 25452000 15280000 7741100 7539300 25436000 13004000 12432000 5084500 2227800 2856700 0 0 0 0 0 0 1071 1841 1115 5276;5277;5278;5279;5280;5281 5354 5354 1 AGAAGGPEEEAEKPVK ADGKAGDEKPEKSQRAGAAGGPEEEAEKPV GAAGGPEEEAEKPVKTKTVSSSNGGESSSR R A G V K T 4 0 0 0 0 0 4 3 0 0 0 2 0 0 2 0 0 0 0 1 0 0 16 1 1538.7577 Q8WW12 Q8WW12 17 32 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2;3 2.7445E-08 97.836 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.79328 0.7598 6.6131 8 Median 0.79388 0.8073 1.3849 2 0 Median 0.85434 0.78114 6.0965 2 0 Median 0.74218 0.74016 5.8824 2 0 Median 0.78888 0.71055 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7977 0.69231 NaN 1 0 Median 50935000 27587000 23348000 19688000 10679000 9008900 10578000 5655000 4923000 15225000 8325600 6899600 4913700 2668100 2245600 0 0 0 530220 259640 270580 1072 3505 1116 5282;5283;5284;5285;5286;5287;5288;5289 5355;5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368 5365 14 AGAANSQLSTSQPSLR AWGLEQRPHVAGKPRAGAANSQLSTSQPSL GAANSQLSTSQPSLRYYALWVQVSLIQQIL R A G L R Y 3 1 1 0 0 2 0 1 0 0 2 0 0 0 1 4 1 0 0 0 0 0 16 0 1586.8012 F5H7W8;Q96C57;G5EA44 F5H7W8 48 63 C12orf43 Uncharacterized protein C12orf43 yes no 2 0.016963 41.54 By MS/MS 1 1.4075 1.3926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4075 1.3926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4349700 1937900 2411800 0 0 0 0 0 0 4349700 1937900 2411800 0 0 0 0 0 0 0 0 0 1073 1045 1117 5290 5369 5369 0 AGAASLDVIQEVEYVKEEAK AKSALVKPVTINVGRAGAASLDVIQEVEYV LDVIQEVEYVKEEAKMVYLLECLQKTPPPV R A G A K M 4 0 0 1 0 1 4 1 0 1 1 2 0 0 0 1 0 0 1 3 0 0 20 1 2148.095 Q9UJV9 Q9UJV9 401 420 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 8.3411E-08 60.034 By MS/MS By matching By matching By matching By matching 1 1 1 1 2 1.1627 1.1402 39.659 6 Median 1.1767 1.1054 NaN 1 0 Median 1.1489 1.0819 NaN 1 0 Median 1.301 1.4855 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0497 1.1761 NaN 1 0 Median 0.8833 0.78071 68.879 2 0 Median 18763000 8117400 10645000 10144000 4061900 6082000 983670 484490 499180 1878400 817590 1060800 0 0 0 5197500 2509500 2688000 559290 243860 315430 1074 4299 1118 5291;5292;5293;5294;5295;5296 5370 5370 1 AGADEERAETAR ______________________________ IFKAGADEERAETARLTSFIGAIAIGDLVK K A G A R L 4 2 0 1 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 12 1 1274.5851 P78371;F5GWF6;F8VQ14 P78371 14 25 CCT2 T-complex protein 1 subunit beta yes no 3 0.00034461 57.348 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 1 1.1606 1.1812 34.438 9 Median 1.1022 1.1401 6.2203 4 0 Median 1.3287 1.2024 18.63 2 0 Median 1.4636 1.5808 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5904 2.7791 NaN 1 0 Median 0.93891 0.82579 NaN 1 0 Median 25373000 10628000 14745000 19676000 8711000 10965000 1397100 559050 838020 480370 191210 289160 0 0 0 3729900 1126000 2604000 89239 40823 48416 1075 2644 1119 5297;5298;5299;5300;5301;5302;5303;5304;5305 5371;5372;5373;5374;5375;5376;5377;5378;5379 5379 9 AGAEDDEEKGEGTPR PEEPAPAVQEDEAEKAGAEDDEEKGEGTPR AGAEDDEEKGEGTPREEGKAGVQSVGEKES K A G P R E 2 1 0 2 0 0 4 3 0 0 0 1 0 0 1 0 1 0 0 0 0 0 15 1 1559.67 Q86VM9;E7ERS3 Q86VM9 150 164 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 3 0.033793 17.252 By MS/MS By matching By matching 1 1 1 0.90884 0.87403 20.366 3 Plateau NaN NaN NaN 0 0 Median 0.90884 0.87403 NaN 1 0 Median 0.5484 0.63076 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82236 0.91718 NaN 1 0 Median NaN NaN NaN 0 0 Median 1064400 562630 501740 0 0 0 550880 286170 264700 193730 106070 87660 0 0 0 319770 170390 149380 0 0 0 1076 884 1120 5306;5307;5308 5380 5380 1 AGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGK RPGLLKDPGVGGKARAGAGAPVVGSGSSGG TGLGPVSTLPSLHGKQGVTSVTCHGGYVYT R A G G K Q 4 0 1 0 0 0 0 10 1 0 3 1 0 1 3 5 2 0 0 3 0 0 34 0 2963.5101 E9PDU5;A0A087X295;Q9NNW5 E9PDU5 485 518 WDR6 WD repeat-containing protein 6 yes no 3 8.9075E-06 33.798 By MS/MS By matching 1 1 0.64627 0.67518 18.52 2 Median 0.59643 0.59231 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70029 0.76965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6082500 3212100 2870400 4488300 2385200 2103100 0 0 0 1594200 826930 767310 0 0 0 0 0 0 0 0 0 1077 132 1121 5309;5310 5381 5381 1 AGAGMITQHSSNASPINR QGPSYHDTRRMGDGRAGAGMITQHSSNASP GMITQHSSNASPINRIVQISGNSMPRGSGS R A G N R I 3 1 2 0 0 1 0 2 1 2 0 0 1 0 1 3 1 0 0 0 0 0 18 0 1810.8744 Q9NWH9;H7C3F4;H0YKH2 Q9NWH9 989 1006 SLTM SAFB-like transcription modulator yes no 2;3 1.3755E-06 66.022 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.79412 0.79782 37.572 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60676 0.66727 NaN 1 0 Median 0.85698 0.72986 NaN 1 0 Median 0.78867 0.814 2.8409 2 0 Median 2.1056 1.709 NaN 1 0 Median 44138000 24053000 20084000 0 0 0 0 0 0 8395600 5138200 3257500 1934900 1185300 749580 30780000 16626000 14154000 3027100 1104000 1923000 1078 4149 1122 5311;5312;5313;5314;5315 5382;5383;5384;5385;5386;5387;5388 5382 7 AGAGSAAVSGAGTPVAGPTGR ______________________________ AVSGAGTPVAGPTGRDLFAEGLLEFLRPAV M A G G R D 6 1 0 0 0 0 0 6 0 0 0 0 0 0 2 2 2 0 0 2 0 0 21 0 1710.8649 O95295 O95295 2 22 SNAPIN SNARE-associated protein Snapin yes yes 2 7.6066E-56 180.84 By MS/MS By MS/MS By MS/MS 1 2 1 0.73957 0.76175 15.071 4 Median 0.74538 0.719 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68667 0.72538 15.087 2 1 Median 1.1721 0.92481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30315000 17829000 12487000 16536000 9737400 6798700 0 0 0 12772000 7629200 5142400 1007600 462150 545410 0 0 0 0 0 0 1079 1761 1123 5316;5317;5318;5319 5389;5390;5391;5392;5393 5391 5 AGAGSATLSMAYAGAR TGRIQEAGTEVVKAKAGAGSATLSMAYAGA GAGSATLSMAYAGARFVFSLVDAMNGKEGV K A G A R F 6 1 0 0 0 0 0 3 0 0 1 0 1 0 0 2 1 0 1 0 0 0 16 0 1453.6984 P40926;G3XAL0 P40926 242 257 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 1.2739E-19 183.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 2 2 1.3041 1.1806 12.891 15 Median 1.12 1.0659 9.2274 6 2 Median 1.4199 1.1911 4.1318 4 0 Median 1.206 1.1707 17.696 2 0 Median 1.6529 1.3793 NaN 1 0 Median 1.3998 1.4186 13.057 2 1 Median NaN NaN NaN 0 0 Median 1725800000 794430000 931360000 1380800000 653490000 727270000 215790000 82526000 133260000 93762000 44667000 49095000 25669000 9728200 15940000 9809200 4019800 5789400 0 0 0 1080 2292 1124;1125 5320;5321;5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335;5336 5394;5395;5396;5397;5398;5399;5400;5401;5402;5403;5404;5405;5406;5407;5408;5409;5410;5411;5412;5413;5414;5415;5416;5417;5418;5419;5420;5421;5422;5423;5424;5425;5426;5427 5397 1044 34 AGAIAPCEVTVPAQNTGLGPEK IRDMLLANKVPAAARAGAIAPCEVTVPAQN EVTVPAQNTGLGPEKTSFFQALGITTKISR R A G E K T 4 0 1 0 1 1 2 3 0 1 1 1 0 0 3 0 2 0 0 2 0 0 22 0 2179.0943 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5 P05388 113 134 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 0.00022115 35.891 By MS/MS By MS/MS 2 1 0.8746 0.65831 7.1363 3 Plateau NaN NaN NaN 0 0 Median 0.83164 0.69876 8.8402 2 0 Median 0.68861 0.65831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21542000 11214000 10328000 0 0 0 18598000 9678800 8919700 2943300 1535200 1408100 0 0 0 0 0 0 0 0 0 1081 1865 1126 5337;5338;5339 5428;5429;5430 5429 3 AGAISASGPELQGAGHSK GSGAASPTGSAVDIRAGAISASGPELQGAG ISASGPELQGAGHSKLQVTMPGIKVGGSGV R A G S K L 4 0 0 0 0 1 1 4 1 1 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1636.8169 Q09666 Q09666 226 243 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 5.3593E-15 112.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 2 1 0.98799 0.94793 26.079 15 Median 1.0008 0.99521 3.7899 2 0 Median 1.1496 1.0152 18.331 3 0 Median 1.0884 1.164 13.198 3 1 Plateau 0.91301 0.87632 17.788 4 0 Median 0.50677 0.54036 26.072 2 0 Median 0.98504 0.84382 NaN 1 0 Median 74681000 39400000 35281000 9784600 4498000 5286600 14505000 7006200 7498700 15315000 7917600 7397200 17461000 8359600 9101300 12359000 8948500 3410900 5256600 2670000 2586600 1082 2749 1127 5340;5341;5342;5343;5344;5345;5346;5347;5348;5349;5350;5351;5352;5353;5354 5431;5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442;5443;5444;5445;5446;5447;5448;5449;5450;5451;5452;5453 5444 23 AGAKPDQIGIITPYEGQR TEAANVEKITTKLLKAGAKPDQIGIITPYE KPDQIGIITPYEGQRSYLVQYMQFSGSLHT K A G Q R S 2 1 0 1 0 2 1 3 0 3 0 1 0 0 2 0 1 0 1 0 0 0 18 1 1913.0007 Q92900 Q92900 794 811 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 2.927E-06 79.633 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1 0.68766 0.67583 24.142 8 Median 0.69893 0.72827 2.4641 2 0 Median 0.67679 0.64196 0.68219 2 0 Median 0.62479 0.70807 NaN 1 0 Median 0.65838 0.63271 NaN 1 0 Median 1.1787 1.3026 NaN 1 0 Median 0.72722 0.63931 NaN 1 0 Median 49934000 26502000 23432000 25377000 13284000 12093000 6204300 3242600 2961600 9988800 5357100 4631700 4975000 2990400 1984500 2823800 1338400 1485400 564780 288560 276230 1083 3564 1128 5355;5356;5357;5358;5359;5360;5361;5362 5454;5455;5456;5457;5458;5459;5460;5461 5458 8 AGALHAQVER HLCRARRYCHDLGERAGALHAQVERLVQQA DLGERAGALHAQVERLVQQAGRQPDSPTAL R A G E R L 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1050.557 Q9BQG0;I3L1L3 Q9BQG0 897 906 MYBBP1A Myb-binding protein 1A yes no 2 0.0048213 51.854 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 1.1323 1.0555 10.221 7 Median NaN NaN NaN 0 0 Median 1.2284 1.0555 NaN 1 0 Median 1.0916 1.1851 NaN 1 0 Median 1.0733 0.94474 NaN 1 0 Median 1.1166 1.1745 5.0449 2 0 Median 1.2016 0.99379 7.5712 2 0 Median 7847900 3671600 4176300 0 0 0 1810400 740930 1069400 1462000 716010 745960 218210 104950 113260 3405400 1682500 1722900 951970 427190 524790 1084 3789 1129 5363;5364;5365;5366;5367;5368;5369 5462;5463;5464;5465;5466;5467 5466 6 AGAVEKGVPLYR FGANAILGVSLAVCKAGAVEKGVPLYRHIA VCKAGAVEKGVPLYRHIADLAGNSEVILPV K A G Y R H 2 1 0 0 0 0 1 2 0 0 1 1 0 0 1 0 0 0 1 2 0 0 12 1 1258.7034 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5 P06733 121 132 ENO1 Alpha-enolase;Enolase yes no 3 0.001272 66.663 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1085 1873 1130 5370 5468 5468 1 AGCAVTSLLASELTK AAFRRKRGPRQANRKAGCAVTSLLASELTK AGCAVTSLLASELTKDDAMAAVPAKVSKNS K A G T K D 3 0 0 0 1 0 1 1 0 0 3 1 0 0 0 2 2 0 0 1 0 0 15 0 1519.7916 A0A0G2JH68;O60610;A0A140T8Z0;H9KV28;H7C2W8 A0A0G2JH68 1225 1239 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0014686 57.019 By MS/MS 1 0.95918 0.84373 NaN 1 Median NaN NaN NaN 0 0 Median 0.95918 0.84373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2076500 1240600 835810 0 0 0 2076500 1240600 835810 0 0 0 0 0 0 0 0 0 0 0 0 1086 274 1131 5371 5469 5469 1 AGDAFGDTSFLNSK SAPLGDFRHTMHVGRAGDAFGDTSFLNSKA RAGDAFGDTSFLNSKAGEPDGESLDEQPSS R A G S K A 2 0 1 2 0 0 0 2 0 0 1 1 0 2 0 2 1 0 0 0 0 0 14 0 1428.6521 J3QQS6;J3KRZ9;Q9H3Q1 J3QQS6 43 56 CDC42EP4 Cdc42 effector protein 4 yes no 2 0.0026705 41.704 By matching By MS/MS By MS/MS 1 2 2 1.4267 1.2168 17.783 5 Median NaN NaN NaN 0 0 Median 1.9418 1.6697 NaN 1 0 Median 1.2018 1.1566 15.541 2 0 Median 1.4564 1.1867 3.54 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8832400 4004600 4827800 0 0 0 220320 52988 167330 7703800 3599200 4104600 908230 352330 555910 0 0 0 0 0 0 1087 1328 1132 5372;5373;5374;5375;5376 5470;5471;5472 5470 3 AGDDTPVGYSVPIKPLDSSR DSGDLGKWQDKITVKAGDDTPVGYSVPIKP PVGYSVPIKPLDSSRQNGTEATSYYWCKFC K A G S R Q 1 1 0 3 0 0 0 2 0 1 1 1 0 0 3 3 1 0 1 2 0 0 20 1 2073.0378 Q9UHF7;H0YC29;E5RJ97;E5RFF3 Q9UHF7 405 424 TRPS1 Zinc finger transcription factor Trps1 yes no 3 7.4946E-06 45.696 By MS/MS 1 0.63064 0.71443 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63064 0.71443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6643100 4227200 2415900 0 0 0 0 0 0 6643100 4227200 2415900 0 0 0 0 0 0 0 0 0 1088 4278 1133 5377 5473 5473 1 AGDEFVEK SLRKVAKKKFAENLKAGDEFVEKTLSTIAT KFAENLKAGDEFVEKTLSTIATSTDAASVV K A G E K T 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 893.41306 A0A0D9SFP2;E9PF18;Q16836;A0A0A0MSE2;A0A1W2PQV5;A0A1W2PQC2;A0A1W2PRT2;A0A1W2PQ55;A0A1W2PP40 A0A0D9SFP2 92 99 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.0034493 95.531 By MS/MS By MS/MS By MS/MS 1 1 1 1.685 1.422 20.504 3 Median 1.0824 1.0068 NaN 1 0 Median 1.7238 1.4491 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.685 1.422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18997000 7690300 11307000 9045600 3871200 5174400 7816400 2994900 4821500 0 0 0 2135300 824180 1311100 0 0 0 0 0 0 1089 269 1134 5378;5379;5380 5474;5475;5476;5477;5478;5479 5476 6 AGDEIDEPSER KYHVMANHNSLPILKAGDEIDEPSERERLR PILKAGDEIDEPSERERLRTVLKRLGKLRC K A G E R E 1 1 0 2 0 0 3 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1216.5208 G3XAG1;Q96ME7 G3XAG1 227 237 ZNF512 Zinc finger protein 512 yes no 2 0.00016115 90.657 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 0.78893 0.8428 32.215 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73078 0.76574 4.6563 2 0 Median NaN NaN NaN 0 0 Median 0.69589 0.72139 21.998 2 0 Median 1.6031 1.3725 7.8774 3 0 Median 8898700 4673900 4224800 0 0 0 0 0 0 2121200 1179100 942170 0 0 0 4721100 2612900 2108200 2056400 881990 1174400 1090 1124 1135 5381;5382;5383;5384;5385;5386;5387;5388 5480;5481;5482;5483;5484;5485;5486;5487;5488 5484 9 AGDEIDEPSERER KYHVMANHNSLPILKAGDEIDEPSERERLR LKAGDEIDEPSERERLRTVLKRLGKLRCMR K A G E R L 1 2 0 2 0 0 4 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 13 1 1501.6645 G3XAG1;Q96ME7 G3XAG1 227 239 ZNF512 Zinc finger protein 512 yes no 3 0.016959 36.417 By MS/MS 1 0.77992 0.83543 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77992 0.83543 NaN 1 1 Median NaN NaN NaN 0 0 Median 3113000 1803900 1309100 0 0 0 0 0 0 0 0 0 0 0 0 3113000 1803900 1309100 0 0 0 1091 1124 1136 5389 5489 5489 1 AGDKPHMQTYEVDLNK PRIKKFAIYRWDPDKAGDKPHMQTYEVDLN GDKPHMQTYEVDLNKCGPMVLDALIKIKNE K A G N K C 1 0 1 2 0 1 1 1 1 0 1 2 1 0 1 0 1 0 1 1 0 0 16 1 1844.8727 P21912;A0A087WWT1 P21912 52 67 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 3 0.0020255 31.677 By MS/MS By MS/MS By matching 1 1 1 1.2877 1.1768 23.717 3 Median 0.91502 0.93025 NaN 1 0 Median 1.2877 1.1768 NaN 1 1 Median 1.4796 1.4948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18208000 8466800 9741700 10870000 5485500 5384800 5314900 2168400 3146500 2023300 812920 1210400 0 0 0 0 0 0 0 0 0 1092 2093 1137 5390;5391;5392 5490;5491;5492 5491 3 AGDLLEDSPK EPAKEKNEKGALKRRAGDLLEDSPKRPKEA ALKRRAGDLLEDSPKRPKEAENPEGEEKEA R A G P K R 1 0 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1043.5135 P51858 P51858 158 167 HDGF Hepatoma-derived growth factor yes yes 2 0.00044455 94.692 By MS/MS By MS/MS 1 1 0.78177 0.70587 0.68474 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7321 0.70246 NaN 1 0 Median 0.83482 0.70929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11953000 6863000 5089600 0 0 0 0 0 0 5865700 3598700 2266900 6086900 3264200 2822600 0 0 0 0 0 0 1093 2444 1138 5393;5394 5493;5494;5495;5496 5495 4 AGDLVFAK ______________________________ PRPREYKAGDLVFAKMKGYPHWPARIDELP K A G A K M 2 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 819.44905 Q9Y3E1;H3BPQ6 Q9Y3E1 11 18 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes no 2 0.0067369 69.998 By MS/MS By MS/MS By MS/MS 2 3 1 1.2669 1.0779 21.839 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87913 0.84049 2.1106 2 0 Median 1.3967 1.1752 12.213 2 1 Median 1.2811 1.316 NaN 1 0 Median NaN NaN NaN 0 0 Median 13244000 6697400 6547000 0 0 0 0 0 0 7918700 4241700 3677000 1379200 620340 758820 3946500 1835400 2111200 0 0 0 1094 4426 1139 5395;5396;5397;5398;5399;5400 5497;5498;5499;5500;5501;5502 5500 6 AGDMENAENILTVMR VTEAVFSALVTGHARAGDMENAENILTVMR AGDMENAENILTVMRDAGIEPGPDTYLALL R A G M R D 2 1 2 1 0 0 2 1 0 1 1 0 2 0 0 0 1 0 0 1 0 0 15 0 1662.7705 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 245 259 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.3769E-06 90.146 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.2672 1.1528 13.371 7 Median 1.0617 1.0251 10.64 2 0 Median 1.4233 1.229 9.0501 2 0 Median 1.2463 1.3678 2.0211 2 0 Median 1.3192 1.1383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34089000 15284000 18806000 20512000 9674900 10837000 6283000 2560500 3722500 6828400 2850600 3977800 465720 197830 267890 0 0 0 0 0 0 1095 2315 1140;1141 5401;5402;5403;5404;5405;5406;5407 5503;5504;5505;5506;5507;5508;5509 5506 1054 7 AGDNILAVLK KYDTADRILTDSIQRAGDNILAVLKHLATS DSIQRAGDNILAVLKHLATSDMLAAASKYR R A G L K H 2 0 1 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1012.5917 Q7Z2K6;E7ER77;A0A0C4DGF0 Q7Z2K6 371 380 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2 0.0034431 56.721 By MS/MS By matching By MS/MS 2 2 1 1.2344 1.1948 18.883 5 Median 0.93254 0.90243 8.6822 2 0 Median 1.369 1.2008 0.70845 2 0 Median 1.2344 1.348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14723000 6879400 7843800 7240600 3746200 3494400 5177500 2083100 3094400 2305100 1050100 1255100 0 0 0 0 0 0 0 0 0 1096 883 1142 5408;5409;5410;5411;5412 5510;5511;5512;5513 5510 4 AGDNIPEEQPVASTPTTVSDGENKK FNLNELYQRAKKLSKAGDNIPEEQPVASTP VASTPTTVSDGENKKDK_____________ K A G K K D 2 0 2 2 0 1 3 2 0 1 0 2 0 0 3 2 3 0 0 2 0 0 25 1 2583.23 Q9Y320 Q9Y320 270 294 TMX2 Thioredoxin-related transmembrane protein 2 yes yes 3 2.4509E-17 67.33 By MS/MS 1 0.59607 0.57008 NaN 1 Median NaN NaN NaN 0 0 Median 0.59607 0.57008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21193000 12661000 8532900 0 0 0 21193000 12661000 8532900 0 0 0 0 0 0 0 0 0 0 0 0 1097 4404 1143 5413 5514 5514 1 AGDNIPEEQPVASTPTTVSDGENKKDK FNLNELYQRAKKLSKAGDNIPEEQPVASTP STPTTVSDGENKKDK_______________ K A G D K - 2 0 2 3 0 1 3 2 0 1 0 3 0 0 3 2 3 0 0 2 0 0 27 2 2826.3519 Q9Y320 Q9Y320 270 296 TMX2 Thioredoxin-related transmembrane protein 2 yes yes 4 0.0063496 22.239 By MS/MS 1 0.42216 0.49867 NaN 1 Median 0.42216 0.49867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4549200 2732900 1816300 4549200 2732900 1816300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1098 4404 1144 5414 5515 5515 1 AGDRQPEWLEEQQGR QQETASRELVKEPARAGDRQPEWLEEQQGR AGDRQPEWLEEQQGRQFCSTQAALQAMERE R A G G R Q 1 2 0 1 0 3 3 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 15 1 1797.8394 A0A087WY61;Q14980 Q14980 944 958 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 3.7272E-07 147.24 By MS/MS By MS/MS By MS/MS 2 1 2 0.72074 0.82481 19.744 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68527 0.86566 6.837 2 0 Median 0.72074 0.65268 NaN 1 0 Median 0.88043 0.95451 23.221 2 0 Median NaN NaN NaN 0 0 Median 79060000 43769000 35291000 0 0 0 0 0 0 67590000 37262000 30328000 1617200 977280 639890 9852400 5529000 4323400 0 0 0 1099 2905;77 1145 5415;5416;5417;5418;5419 5516;5517;5518;5519;5520;5521;5522;5523;5524 5520 9 AGDVEEDASQLIFPK ______________________________ AGDVEEDASQLIFPKEFETAETLLNSEVHM R A G P K E 2 0 0 2 0 1 2 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 15 0 1617.7886 O15514;E9PHV4 O15514 10 24 POLR2D DNA-directed RNA polymerase II subunit RPB4 yes no 2 0.034239 24.855 By matching By MS/MS By matching 1 1 1 0.76159 0.86217 14.243 3 Median 1.0483 0.9874 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76159 0.74272 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75682 0.86217 NaN 1 0 Median NaN NaN NaN 0 0 Median 7385600 4122200 3263400 1190700 544870 645800 0 0 0 3690300 2145900 1544400 0 0 0 2504600 1431400 1073200 0 0 0 1100 937 1146 5420;5421;5422 5525;5526 5525 2 AGEAAELQDAEVESSAK PGPSPAGPTRDEPAKAGEAAELQDAEVESS EAAELQDAEVESSAKSGKP___________ K A G A K S 5 0 0 1 0 1 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 17 0 1703.785 Q9NZT2;A0A0A0MRN5 Q9NZT2 657 673 OGFR Opioid growth factor receptor yes no 2 2.7598E-05 56.225 By matching By MS/MS 1 1 1.1912 1.1128 19.653 2 Median 0.97889 0.96843 NaN 1 0 Median 1.4495 1.2787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4321600 1920100 2401500 1817300 906850 910440 2504300 1013300 1491000 0 0 0 0 0 0 0 0 0 0 0 0 1101 166 1147 5423;5424 5527;5528 5527 2 AGEAGKLEEVMQELR TTTAADATPSGSLARAGEAGKLEEVMQELR AGEAGKLEEVMQELRALRALVKEQGDRICR R A G L R A 2 1 0 0 0 1 4 2 0 0 2 1 1 0 0 0 0 0 0 1 0 0 15 1 1658.8298 Q9BR76 Q9BR76 447 461 CORO1B Coronin-1B yes yes 3 0.00011238 64.675 By matching By MS/MS 1 1 0.95514 0.96539 10.531 2 Median NaN NaN NaN 0 0 Median 0.98147 0.89611 NaN 1 0 Median 0.92951 1.04 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11038000 5809200 5228500 0 0 0 4877300 2778300 2099000 6160500 3031000 3129500 0 0 0 0 0 0 0 0 0 1102 3792 1148 5425;5426 5529;5530 5530 2 AGEAPTENPAPPTQQSSAE PRPPNAPSQDGKEAKAGEAPTENPAPPTQQ PTENPAPPTQQSSAE_______________ K A G A E - 4 0 1 0 0 2 3 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1880.8388 P16989 P16989 354 372 YBX3 Y-box-binding protein 3 yes yes 2 2.3283E-06 59.57 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1573900 0 0 0 0 0 1573900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1103 2033 1149 5427 5531 5531 1 AGEGLGTSSGDAISGTDHNSLDSSLTR LEPLKPLKIKLSVPKAGEGLGTSSGDAISG ISGTDHNSLDSSLTREKIEAKIKEVEEKQP K A G T R E 2 1 1 3 0 0 1 5 1 1 3 0 0 0 0 6 3 0 0 0 0 0 27 0 2604.1899 Q9ULL5;A0A3Q5ADB5 Q9ULL5 1234 1260 PRR12 Proline-rich protein 12 yes no 3 6.6126E-32 105.03 By MS/MS By MS/MS 2 2 0.90528 0.9358 10.834 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8546 0.9358 0.83379 2 0 Median 1.0678 0.92348 18.699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33604000 17088000 16517000 0 0 0 0 0 0 30840000 15745000 15095000 2764200 1342400 1421800 0 0 0 0 0 0 1104 4325 1150 5428;5429;5430;5431 5532;5533;5534;5535 5532 4 AGELTEDEVER AHVVLRKADIDLTKRAGELTEDEVERVITI LTKRAGELTEDEVERVITIMQNPRQYKIPD R A G E R V 1 1 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1246.5677 P62269 P62269 56 66 RPS18 40S ribosomal protein S18 yes yes 2 0.00011196 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 2 1.1235 1.0284 13.225 11 Median 1.0732 0.99431 18.399 3 0 Median 1.1189 0.93175 1.426 2 1 Median 1.0473 1.0328 0.61187 2 0 Median 1.3198 1.0934 NaN 1 0 Median 1.2911 1.3659 NaN 1 0 Median 1.2563 1.0013 4.8279 2 0 Median 273260000 125130000 148130000 185520000 85567000 99949000 55720000 25043000 30677000 20837000 9779000 11058000 2589400 1033900 1555400 2923700 1267600 1656100 5672400 2439600 3232800 1105 2578 1151 5432;5433;5434;5435;5436;5437;5438;5439;5440;5441;5442 5536;5537;5538;5539;5540;5541;5542;5543;5544;5545;5546;5547;5548;5549;5550;5551;5552;5553;5554;5555 5548 20 AGELTPEEEAQYK ______________________________ ______________________________ M A G Y K K 2 0 0 0 0 1 4 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 13 0 1463.678 Q9NZT1 Q9NZT1 2 14 CALML5 Calmodulin-like protein 5 yes yes 2 0.0088295 53.327 By MS/MS 1 0.078912 0.058917 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.078912 0.058917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5763800 5420200 343560 0 0 0 0 0 0 0 0 0 5763800 5420200 343560 0 0 0 0 0 0 1106 4194 1152 5443 5556 5556 1 AGELTPEEEAQYKK ______________________________ MAGELTPEEEAQYKKAFSAVDTDGNGTINA M A G K K A 2 0 0 0 0 1 4 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 14 1 1591.773 Q9NZT1 Q9NZT1 2 15 CALML5 Calmodulin-like protein 5 yes yes 2 3.1362E-20 150.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 9 3 0.11322 0.12911 143.69 15 Median 0.17859 0.19465 NaN 1 1 Median 0.18936 0.17699 116.02 2 2 Median 0.29595 0.31067 113.37 3 3 Median 0.11086 0.10213 171.55 6 6 Median 0.094569 0.10139 41.864 3 3 Median NaN NaN NaN 0 0 Median 97786000 89564000 8222700 8493400 7741800 751660 4134300 3558100 576210 14810000 10512000 4298200 58171000 56381000 1790200 12177000 11371000 806320 0 0 0 1107 4194 1153 5444;5445;5446;5447;5448;5449;5450;5451;5452;5453;5454;5455;5456;5457;5458;5459;5460;5461;5462 5557;5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575 5575 19 AGELWLPHGTVATPVFMPVGTQATMK RIMRLVAECSRSRARAGELWLPHGTVATPV ATPVFMPVGTQATMKGITTEQLDALGCRIC R A G M K G 3 0 0 0 0 1 1 3 1 0 2 1 2 1 3 0 4 1 0 3 0 0 26 0 2738.3924 Q9BXR0;K7ESP6;K7EJ21 Q9BXR0 30 55 QTRT1 Queuine tRNA-ribosyltransferase yes no 3 0.065224 6.0949 By MS/MS 1 0.50708 0.47592 NaN 1 Median 0.50708 0.47592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3029700 1952600 1077000 3029700 1952600 1077000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1108 3880 1154 5463 5576 5576 1 AGEQLAPFLPQLVPR SRKGAAFGFNVIATRAGEQLAPFLPQLVPR AGEQLAPFLPQLVPRLYRYQFDPNLGIRQA R A G P R L 2 1 0 0 0 2 1 1 0 0 3 0 0 1 3 0 0 0 0 1 0 0 15 0 1634.9144 Q5VYK3;J3KN16 Q5VYK3 1112 1126 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0003103 67.334 By MS/MS By MS/MS By matching 1 2 1 0.8083 0.80239 30.613 4 Median 0.68142 0.6406 NaN 1 0 Median 0.97374 0.84238 42.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89116 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median 18320000 10471000 7848900 9293300 5470200 3823100 8443700 4750700 3693000 0 0 0 0 0 0 582620 249890 332730 0 0 0 1109 3116 1155 5464;5465;5466;5467 5577;5578;5579;5580;5581;5582 5577 6 AGEVERDLDKADSMIR QSDVRLLAAGKVPQRAGEVERDLDKADSMI GEVERDLDKADSMIRLLFNDVQTLKDGRHP R A G I R L 2 2 0 3 0 0 2 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 16 2 1803.8785 Q15149;H0YDN1;E9PMV1 Q15149 572 587 PLEC Plectin yes no 4 0.033996 14.929 By MS/MS 1 1.0709 1.0331 NaN 1 Median 1.0709 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4661500 1637300 3024200 4661500 1637300 3024200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1110 2933 1156 5468 5583 5583 1 AGEVFIHK ITEEEMRKLFEKYGKAGEVFIHKDKGFGFI LFEKYGKAGEVFIHKDKGFGFIRLETRTLA K A G H K D 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 899.4865 Q15233;H7C367;C9JYS8;C9IZL7 Q15233 100 107 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.003446 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 3 2 1.3041 1.1062 19.425 15 Median 1.4725 1.4205 NaN 1 0 Median 1.3445 1.1341 3.5238 2 2 Median 1.0042 0.97102 13.435 3 0 Median 1.5023 1.3054 12.392 4 0 Median 0.92306 0.94842 16.574 3 0 Median 1.2987 1.0799 2.2394 2 1 Median 110300000 49854000 60442000 2345500 939520 1406000 19326000 7538000 11788000 35416000 17047000 18369000 16225000 6759900 9465100 29535000 14073000 15462000 7449600 3496700 3952900 1111 2935 1157 5469;5470;5471;5472;5473;5474;5475;5476;5477;5478;5479;5480;5481;5482;5483 5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594;5595;5596;5597;5598;5599;5600 5598 17 AGEVINQPMMMAAR PPPPEEKDEEFPEQKAGEVINQPMMMAARQ KAGEVINQPMMMAARQLHDEARKWSSKPGI K A G A R Q 3 1 1 0 0 1 1 1 0 1 0 0 3 0 1 0 0 0 0 1 0 0 14 0 1517.7153 P18206 P18206 890 903 VCL Vinculin yes yes 2 1.3132E-30 150.08 By MS/MS By MS/MS By MS/MS 2 2 1 0.86358 0.78953 52.085 4 Median 0.84992 0.81846 NaN 1 0 Median 0.55385 0.48082 65.047 2 0 Median 0.87745 0.96481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37617000 20634000 16983000 14954000 8377100 6576800 10879000 5863400 5015900 11784000 6393800 5390200 0 0 0 0 0 0 0 0 0 1112 2057 1158;1159 5484;5485;5486;5487;5488 5601;5602;5603;5604;5605;5606 5603 819;820;821 6 AGEVQEPELR AYDFYPGKIDVHWTRAGEVQEPELRGDVLH VHWTRAGEVQEPELRGDVLHNGNGTYQSWV R A G L R G 1 1 0 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 10 0 1126.5619 P25311 P25311 242 251 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.021078 52.255 By MS/MS 1 0.47188 0.39331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47188 0.39331 NaN 1 1 Median 1551800 1001100 550720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1551800 1001100 550720 1113 2130 1160 5489 5607 5607 1 AGEYIFER DHPDIKAISFVGSNKAGEYIFERGSRHGKR SFVGSNKAGEYIFERGSRHGKRVQANMGAK K A G E R G 1 1 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 8 0 983.47125 Q02252 Q02252 265 272 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes yes 2 0.012238 55.37 By MS/MS By MS/MS 1 1 1.3079 1.1964 37.015 2 Median 0.94104 0.92088 NaN 1 0 Median 1.8177 1.5543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8483100 3848600 4634500 5421900 2955200 2466800 3061100 893410 2167700 0 0 0 0 0 0 0 0 0 0 0 0 1114 2697 1161 5490;5491 5608;5609 5608 2 AGFAGDDAPR EIAALVIDNGSGMCKAGFAGDDAPRAVFPS SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV K A G P R A 3 1 0 2 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 10 0 975.44101 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;F8WCH0;P68032;P68133;A6NL76;Q6S8J3;A5A3E0;P0CG38;P0CG39 P63261 19 28 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEI;POTEJ Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J no no 2 1.2023E-05 151.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 10 9 5 7 5 0.88338 0.81481 16.722 46 Median 0.92248 0.89178 26.446 11 0 Median 1.0385 0.89513 9.4889 9 0 Plateau 0.77091 0.79033 14.726 9 1 Median 1.0262 0.83711 10.567 5 0 Median 0.76385 0.81525 15.561 7 0 Median 0.99995 0.79963 13.395 5 1 Median 2287300000 1151400000 1135900000 509100000 251490000 257610000 1254800000 611770000 643040000 158530000 89909000 68625000 85807000 40925000 44882000 233130000 134660000 98473000 45935000 22645000 23290000 1115 2625;2630;2595;3181 1162 5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532;5533;5534;5535;5536;5537;5538 5610;5611;5612;5613;5614;5615;5616;5617;5618;5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649;5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661;5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679 5654 70 AGFAGDQIPK ANQPVVIDNGSGVIKAGFAGDQIPKYCFPN SGVIKAGFAGDQIPKYCFPNYVGRPKHVRV K A G P K Y 2 0 0 1 0 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 0 0 10 0 1002.5134 P42025;P61163;R4GMT0;A0A1B0GVS3 P61163 23 32 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2 0.00034228 96.034 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0852 1.017 7.7486 4 Median 0.95662 0.88369 NaN 1 0 Median 1.2341 1.0514 NaN 1 0 Median 0.98925 1.0214 NaN 1 0 Median 1.1905 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65121000 31942000 33179000 17573000 8834400 8738300 18548000 7948500 10600000 21574000 11646000 9927900 7426800 3513900 3912900 0 0 0 0 0 0 1116 2547;2304 1163 5539;5540;5541;5542 5680;5681;5682;5683;5684;5685;5686 5684 7 AGFDSDYDQALADIR FDHEKARKTGLITPKAGFDSDYDQALADIR AGFDSDYDQALADIRENEQSLLEYLEKQRN K A G I R E 3 1 0 4 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 15 0 1655.7427 P52701;A0A494C0M1;A0A087WWJ1 P52701 931 945 MSH6 DNA mismatch repair protein Msh6 yes no 2 6.9056E-07 96.64 By MS/MS By matching By MS/MS By MS/MS By matching 2 3 2 2 1 0.94141 0.96947 22.092 10 Median 0.98068 0.95046 15.276 2 0 Median 1.3091 1.1412 32.555 3 0 Plateau 0.89899 0.99338 2.8845 2 0 Median 1.0865 0.98006 14.257 2 0 Median NaN NaN NaN 0 0 Median 0.73063 0.61861 NaN 1 0 Median 15349000 7542100 7807000 7238200 3581200 3657000 1190400 509700 680720 5648400 2875000 2773500 1191400 535350 656040 0 0 0 80650 40826 39824 1117 2453 1164 5543;5544;5545;5546;5547;5548;5549;5550;5551;5552 5687;5688;5689;5690;5691 5688 5 AGFFGTVVEYGAER KFQDDDQTRVKGSLKAGFFGTVVEYGAERK KAGFFGTVVEYGAERKISRHSVLGAAVSVG K A G E R K 2 1 0 0 0 0 2 3 0 0 0 0 0 2 0 0 1 0 1 2 0 0 14 0 1501.7201 Q9NVH1 Q9NVH1 328 341 DNAJC11 DnaJ homolog subfamily C member 11 yes yes 2 0.00078102 68.069 By MS/MS 2 1.0793 1.061 1.5646 2 Median 1.0793 1.061 1.5646 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7684300 3533500 4150800 7684300 3533500 4150800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1118 4130 1165 5553;5554 5692;5693 5693 2 AGFLYTGEGDTVR NFPSGSPVSASTLARAGFLYTGEGDTVRCF ARAGFLYTGEGDTVRCFSCHAAVDRWQYGD R A G V R C 1 1 0 1 0 0 1 3 0 0 1 0 0 1 0 0 2 0 1 1 0 0 13 0 1384.6623 P98170;B1AKU2 P98170 50 62 XIAP E3 ubiquitin-protein ligase XIAP yes no 2 0.016991 32.523 By MS/MS 1 0.83639 0.81103 NaN 1 Median 0.83639 0.81103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 727110 383420 343700 727110 383420 343700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1119 2670 1166 5555 5694 5694 1 AGFTAAYSEK PSTGHLFDLSSLSGRAGFTAAYSEKGLVYM SLSGRAGFTAAYSEKGLVYMSICGENENCP R A G E K G 3 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 10 0 1043.4924 P11717 P11717 1536 1545 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.00067886 93.098 By MS/MS 2 1.1023 0.98031 NaN 1 Median NaN NaN NaN 0 0 Median 1.1023 0.98031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14632000 6654700 7976800 0 0 0 14632000 6654700 7976800 0 0 0 0 0 0 0 0 0 0 0 0 1120 1969 1167 5556;5557 5695;5696 5695 2 AGFVPVYLR VSYGLTPRLLKFWKRAGFVPVYLRQTPNDL LKFWKRAGFVPVYLRQTPNDLTGEHSCIML R A G L R Q 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 9 0 1020.5757 Q9H0A0;A0A087WV29 Q9H0A0 726 734 NAT10 N-acetyltransferase 10 yes no 2 0.0029572 68.422 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 4 1 2 2 1.0161 1.0011 71.264 11 Median 0.96023 0.9665 NaN 1 0 Median 1.1738 0.99798 NaN 1 0 Median 0.90202 0.98672 117.61 4 1 Median 1.2306 1.0484 NaN 1 0 Median 1.0323 1.0581 0.29034 2 0 Median 1.2191 0.99621 1.8618 2 0 Median 38758000 21120000 17637000 1149900 518400 631470 3632100 1711400 1920700 23608000 13974000 9633900 1589800 686240 903550 7416900 3645000 3771900 1360800 584860 775970 1121 3921 1168 5558;5559;5560;5561;5562;5563;5564;5565;5566;5567;5568 5697;5698;5699;5700;5701 5698 5 AGGAAVVITEPEHTK PGGGKRAARPATAGKAGGAAVVITEPEHTK AGGAAVVITEPEHTKERVKLEGSKCKGQLL K A G T K E 3 0 0 0 0 0 2 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 15 0 1478.7729 Q9P258 Q9P258 78 92 RCC2 Protein RCC2 yes yes 2;3 2.4822E-10 140.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 5 7 2 0.88038 0.77362 19.963 19 Median 0.73133 0.71049 9.4504 3 1 Median 0.90522 0.77362 23.283 3 1 Plateau 0.86376 0.8345 14.848 5 0 Median 0.96563 0.82717 11.998 6 2 Median NaN NaN NaN 0 0 Median 0.72593 0.61055 27.367 2 0 Median 147340000 74635000 72703000 8569400 5123500 3445900 7251300 4101600 3149800 53781000 27406000 26375000 75118000 36420000 38698000 0 0 0 2619600 1584200 1035500 1122 4214 1169 5569;5570;5571;5572;5573;5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589 5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732 5730 31 AGGAAVVITEPEHTKER PGGGKRAARPATAGKAGGAAVVITEPEHTK GAAVVITEPEHTKERVKLEGSKCKGQLLIF K A G E R V 3 1 0 0 0 0 3 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 17 1 1763.9166 Q9P258 Q9P258 78 94 RCC2 Protein RCC2 yes yes 3;4 7.4861E-06 60.209 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 8 1 2 0.91189 0.91071 17.797 17 Median 0.87774 0.88532 17.386 4 0 Median NaN NaN NaN 0 0 Median 0.91588 1.0224 1.7118 2 0 Median 0.97884 0.92113 19.395 8 0 Median 0.68303 0.71005 NaN 1 0 Median 0.81351 0.74477 8.4184 2 0 Median 35574000 17713000 17861000 11307000 5608000 5699000 0 0 0 7320200 3707400 3612800 12176000 5722600 6453700 2947700 1582100 1365600 1823100 1093100 729980 1123 4214 1170 5590;5591;5592;5593;5594;5595;5596;5597;5598;5599;5600;5601;5602;5603;5604;5605;5606 5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748 5748 16 AGGADAVQTVTGGLR ______________________________ AGGADAVQTVTGGLRSLYLRKVLPLEEAYR R A G L R S 3 1 0 1 0 1 0 4 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1371.7106 Q9H223 Q9H223 15 29 EHD4 EH domain-containing protein 4 yes yes 2 5.4409E-68 182.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.81202 0.68147 14.983 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68719 0.68147 NaN 1 1 Median 0.81202 0.6812 NaN 1 1 Median 0.88017 0.88321 NaN 1 1 Median NaN NaN NaN 0 0 Median 39979000 23353000 16626000 0 0 0 0 0 0 25484000 15153000 10331000 6919800 4026000 2893800 7575100 4173700 3401400 0 0 0 1124 3939 1171 5607;5608;5609;5610;5611;5612 5749;5750;5751;5752;5753;5754 5749 6 AGGAGVPAFYTPTGYGTLVQEGGSPIK EVELTPQGTLAERIRAGGAGVPAFYTPTGY TGYGTLVQEGGSPIKYNKDGSVAIASKPRE R A G I K Y 3 0 0 0 0 1 1 7 0 1 1 1 0 1 3 1 3 0 2 2 0 0 27 0 2594.3017 P55809 P55809 147 173 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 3 3.0314E-05 31.6 By MS/MS 2 0.72837 0.73293 32.725 2 Median 0.72837 0.73293 32.725 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2871300 1665100 1206200 2871300 1665100 1206200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1125 2503 1172 5613;5614 5755 5755 1 AGGDAEPRPAEPPAWAGGAR SAAVLFSAVAVGKPRAGGDAEPRPAEPPAW EPRPAEPPAWAGGARPGPGVWDPNWDRREP R A G A R P 6 2 0 1 0 0 2 4 0 0 0 0 0 0 4 0 0 1 0 0 0 0 20 1 1931.9238 Q96HS1 Q96HS1 33 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 5.1531E-08 61.167 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.60871 0.59664 19.787 4 Median 0.46024 0.49548 NaN 1 0 Median 0.594 0.54674 NaN 1 0 Median 0.62379 0.65109 NaN 1 1 Median 0.83171 0.77614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14483000 8601800 5881400 3312600 2052800 1259900 2755300 1789700 965580 4823200 2874500 1948600 3592200 1884800 1707400 0 0 0 0 0 0 1126 3669 1173 5615;5616;5617;5618 5756;5757;5758 5757 3 AGGEAGVTLGQPHLSR ______________________________ GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS M A G S R Q 2 1 0 0 0 1 1 4 1 0 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1548.8009 P41091;Q2VIR3 P41091 2 17 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3 3.118E-63 238.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 6 5 9 4 3 1.0957 0.95032 23.831 35 Median 1.0119 0.96497 34.14 8 3 Median 1.0672 0.89955 17.704 6 0 Median 1.1291 1.0829 18.453 5 0 Median 1.1008 0.94081 9.0313 9 1 Median 1.2331 1.2542 4.891 4 1 Median 1.1007 0.8217 19.553 3 0 Median 618700000 291580000 327120000 152810000 76500000 76309000 46179000 22997000 23182000 219030000 98506000 120520000 163360000 76388000 86977000 18424000 8456400 9967300 18898000 8737500 10161000 1127 2295 1174;1175 5619;5620;5621;5622;5623;5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649;5650;5651;5652;5653 5759;5760;5761;5762;5763;5764;5765;5766;5767;5768;5769;5770;5771;5772;5773;5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799 5765 40 AGGEELDEGVAK TLDFEDDTVQSSGPRAGGEELDEGVAKDNA GPRAGGEELDEGVAKDNAKIDGATQSSPAE R A G A K D 2 0 0 1 0 0 3 3 0 0 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1173.5513 Q32MZ4 Q32MZ4 691 702 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes yes 2 0.042856 44.863 By MS/MS 1 2.1308 1.7861 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1308 1.7861 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 791380 282430 508950 0 0 0 0 0 0 0 0 0 791380 282430 508950 0 0 0 0 0 0 1128 3006 1176 5654 5800 5800 1 AGGFASALER GSESGSSNAKEPKTRAGGFASALERHSELL EPKTRAGGFASALERHSELLQKVEPLQKGS R A G E R H 3 1 0 0 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 977.49304 Q9Y2Q9;H7C5V3;E5RFT8 Q9Y2Q9 49 58 MRPS28 28S ribosomal protein S28, mitochondrial yes no 2 0.0003619 122.13 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.4939 1.4397 80.789 5 Median 1.4939 1.4397 NaN 1 0 Median 1.7921 1.4858 NaN 1 0 Median 1.199 1.1514 NaN 1 1 Median 0.28539 0.25554 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4796 1.9533 NaN 1 0 Median 34331000 15681000 18650000 17463000 8043100 9419800 8568900 3399600 5169300 7038900 3298400 3740600 1113300 888640 224680 0 0 0 147260 51420 95844 1129 4387 1177 5655;5656;5657;5658;5659 5801;5802;5803;5804;5805 5802 5 AGGGPTLQCPPPSSPEK IAAGFGAYPVAAKARAGGGPTLQCPPPSSP GGPTLQCPPPSSPEKAASLEYDYETIRNID R A G E K A 1 0 0 0 1 1 1 3 0 0 1 1 0 0 5 2 1 0 0 0 0 0 17 0 1678.7985 Q96N66 Q96N66 272 288 MBOAT7 Lysophospholipid acyltransferase 7 yes yes 2 6.8348E-12 98.105 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2442300 2442300 0 0 0 0 2442300 2442300 0 0 0 0 0 0 0 0 0 0 0 0 0 1130 3706 1178 5660 5806 5806 1 AGGIETIANEFSDR GLDVGSQSCYIAVARAGGIETIANEFSDRC RAGGIETIANEFSDRCTPSVISFGSKNRTI R A G D R C 2 1 1 1 0 0 2 2 0 2 0 0 0 1 0 1 1 0 0 0 0 0 14 0 1478.7001 Q92598;R4GN69 Q92598 20 33 HSPH1 Heat shock protein 105 kDa yes no 2 0.00016414 79.693 By MS/MS By MS/MS By MS/MS 1 3 1 1.1742 1.0283 28.144 5 Median 1.4594 1.4054 NaN 1 0 Median 1.153 1.022 15.969 3 0 Median 1.4712 1.5757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23165000 9241000 13924000 15118000 5789200 9328400 5532600 2469400 3063200 2515300 982360 1532900 0 0 0 0 0 0 0 0 0 1131 3541 1179 5661;5662;5663;5664;5665 5807;5808;5809;5810 5807 4 AGGIETIANEYSDR GIDLGFQSCYVAVARAGGIETIANEYSDRC RAGGIETIANEYSDRCTPACISFGPKNRSI R A G D R C 2 1 1 1 0 0 2 2 0 2 0 0 0 0 0 1 1 0 1 0 0 0 14 0 1494.6951 P34932;A0A087WYC1;A0A087WTS8 P34932 20 33 HSPA4 Heat shock 70 kDa protein 4 yes no 2 2.3289E-11 177.78 By MS/MS By MS/MS By MS/MS 2 2 1 1.2025 1.0501 49.549 5 Median 1.2372 1.1915 4.5025 2 0 Median 1.2482 1.0225 3.7708 2 0 Median NaN NaN NaN 0 0 Median 0.43649 0.37012 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121810000 55563000 66251000 90070000 39538000 50532000 23668000 10501000 13167000 0 0 0 8075400 5523500 2551900 0 0 0 0 0 0 1132 2230 1180 5666;5667;5668;5669;5670 5811;5812;5813;5814 5811 4 AGGKEFLETVK AEIDLKEDIGKALEKAGGKEFLETVKELRK ALEKAGGKEFLETVKELRKSQGPLEVAEAA K A G V K E 1 0 0 0 0 0 2 2 0 0 1 2 0 1 0 0 1 0 0 1 0 0 11 1 1177.6343 Q9P0M6;Q5SQT3 Q9P0M6 236 246 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 2 0.0007521 99.815 By MS/MS By MS/MS 2 1 0.84716 0.89997 30.51 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76628 0.81617 13.822 2 0 Median 1.5108 1.3465 NaN 1 0 Median 59979000 33227000 26752000 0 0 0 0 0 0 0 0 0 0 0 0 53289000 30323000 22966000 6690400 2903800 3786600 1133 4206 1181 5671;5672;5673 5815;5816;5817;5818;5819 5819 5 AGGLIYQLDSYAPR ______________________________ KAGGLIYQLDSYAPRAEAEKTFSYPLDLLL K A G P R A 2 1 0 1 0 1 0 2 0 1 2 0 0 0 1 1 0 0 2 0 0 0 14 0 1522.778 E9PKS9;E9PQE8;E9PN70;Q9Y296;G3V1A0;G5EA23;J3KP27 E9PKS9 12 25 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 2 0.00072107 68.551 By MS/MS 1 2.1225 2.0098 NaN 1 Median 2.1225 2.0098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8123100 2330100 5793000 8123100 2330100 5793000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1134 949 1182 5674 5820 5820 1 AGGPAAAEPLLAAEK ADLHRQLQEYLAQGKAGGPAAAEPLLAAEK AGGPAAAEPLLAAEKAEEPGDRPAEEWLGR K A G E K A 6 0 0 0 0 0 2 2 0 0 2 1 0 0 2 0 0 0 0 0 0 0 15 0 1364.73 Q587I9 Q587I9 17 31 SFT2D3 Vesicle transport protein SFT2C yes yes 2 0.00046157 61.435 By MS/MS 1 0.17455 0.16445 NaN 1 Median 0.17455 0.16445 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20627000 17943000 2684200 20627000 17943000 2684200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1135 3038 1183 5675 5821 5821 1 AGGPATPLSPTR RPRAAATMATPLPGRAGGPATPLSPTRLSR PGRAGGPATPLSPTRLSRLQEKEELRELND R A G T R L 2 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 2 0 0 0 0 0 12 0 1123.5986 Q03252 Q03252 29 40 LMNB2 Lamin-B2 yes yes 2 3.2601E-06 109.29 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 2 0.69168 0.72171 33.276 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7056 0.72171 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54676 0.5557 34.183 6 1 Median 0.98576 0.8224 13.918 2 0 Median 52392000 29972000 22420000 0 0 0 0 0 0 7667700 4390700 3277000 0 0 0 30544000 18782000 11761000 14181000 6798900 7381700 1136 2709 1184 5676;5677;5678;5679;5680;5681;5682;5683;5684;5685 5822;5823;5824;5825;5826;5827;5828;5829;5830;5831;5832 5824 11 AGGPTTPLSPTR ______________________________ GSRAGGPTTPLSPTRLSRLQEKEELRELND R A G T R L 1 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 3 0 0 0 0 0 12 0 1153.6091 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 15 26 LMNB1 Lamin-B1 yes no 2 0.00012009 90.108 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 8 0.7564 0.5854 19.36 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54111 0.54834 NaN 1 0 Median 0.84173 0.70468 NaN 1 0 Median 0.52558 0.52533 5.6718 6 0 Median 0.94525 0.76454 15.139 8 0 Median 176760000 104450000 72314000 0 0 0 0 0 0 18455000 11331000 7124200 3957400 2222100 1735300 100430000 63801000 36628000 53923000 27097000 26826000 1137 2084 1185 5686;5687;5688;5689;5690;5691;5692;5693;5694;5695;5696;5697;5698;5699;5700;5701 5833;5834;5835;5836;5837;5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857;5858;5859;5860;5861;5862;5863;5864;5865 5842 33 AGGSASAMLQPLLDNQVGFK YSFDPVGSYQRDSFKAGGSASAMLQPLLDN SAMLQPLLDNQVGFKNMQNVEHVPLSLDRA K A G F K N 3 0 1 1 0 2 0 3 0 0 3 1 1 1 1 2 0 0 0 1 0 0 20 0 2003.0146 P20618 P20618 165 184 PSMB1 Proteasome subunit beta type-1 yes yes 2;3 2.5039E-08 80.312 By MS/MS By MS/MS By matching By matching By matching 3 4 1 2 3 0.95489 0.87292 16.476 13 Median 0.95489 0.8901 8.9914 3 0 Median 1.0266 0.87056 16.99 4 0 Median 0.8346 0.79555 NaN 1 0 Median 1.0239 0.8294 28.025 2 0 Median 0.85668 0.87292 24.856 3 0 Median NaN NaN NaN 0 0 Median 60110000 28696000 31414000 46055000 21755000 24299000 7316000 3391300 3924700 1257300 636900 620370 362990 159430 203560 5119200 2753300 2366000 0 0 0 1138 2081 1186;1187 5702;5703;5704;5705;5706;5707;5708;5709;5710;5711;5712;5713;5714 5866;5867;5868;5869;5870;5871;5872 5868 838 7 AGHFDKEIVPVLVSTR KVAVLSQNRTENAQKAGHFDKEIVPVLVST GHFDKEIVPVLVSTRKGLIEVKTDEFPRHG K A G T R K 1 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 0 0 3 0 0 16 1 1766.9679 Q9BWD1 Q9BWD1 195 210 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 3;4 6.7649E-07 86.641 By MS/MS By matching By MS/MS 3 1 1 0.9801 1.0399 6.6526 5 Median 0.92689 0.99306 4.7871 3 2 Median 1.111 1.0399 NaN 1 0 Median 1.0008 1.1394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58693000 29105000 29589000 44975000 22295000 22680000 2211300 997520 1213800 11507000 5812300 5694200 0 0 0 0 0 0 0 0 0 1139 3868 1188 5715;5716;5717;5718;5719 5873;5874;5875;5876;5877;5878 5874 6 AGHMVPSDQGDMALK FVKSYKNLAFYWILKAGHMVPSDQGDMALK AGHMVPSDQGDMALKMMRLVTQQE______ K A G L K M 2 0 0 2 0 1 0 2 1 0 1 1 2 0 1 1 0 0 0 1 0 0 15 0 1555.7123 Q9HB40;I3L4Z9 Q9HB40 429 443 SCPEP1 Retinoid-inducible serine carboxypeptidase yes no 2;3 0.00010157 61.212 By MS/MS By MS/MS 2 1 1.0801 1.021 26.69 3 Median 1.0602 1.002 2.6554 2 0 Median 1.851 1.5891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18088000 8040600 10047000 13640000 6520400 7120000 4447200 1520200 2927000 0 0 0 0 0 0 0 0 0 0 0 0 1140 4015 1189 5720;5721;5722 5879;5880;5881;5882;5883;5884 5884 6 AGHNVIALVGGATAR VGHLLALLGLFHLQRAGHNVIALVGGATAR AGHNVIALVGGATARLGDPSGRTKEREALE R A G A R L 4 1 1 0 0 0 0 3 1 1 1 0 0 0 0 0 1 0 0 2 0 0 15 0 1405.779 Q9Y2Z4;H0YHS6 Q9Y2Z4 104 118 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2;3 1.5547E-09 113.38 By MS/MS By matching By MS/MS By MS/MS 2 2 3 3 1.5293 1.3341 31.696 10 Median 1.9499 1.8996 46.42 2 0 Median 1.9228 1.6712 16.52 2 0 Median 1.0932 1.0659 23.588 3 0 Median 1.5314 1.3277 1.1303 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127590000 52636000 74955000 12620000 4943300 7676600 4406000 1319600 3086400 39924000 18890000 21034000 70641000 27483000 43158000 0 0 0 0 0 0 1141 4399 1190 5723;5724;5725;5726;5727;5728;5729;5730;5731;5732 5885;5886;5887;5888;5889;5890;5891;5892;5893;5894 5894 10 AGHQVMVFVHAR NMDEVCYENVLKQVKAGHQVMVFVHARNAT QVKAGHQVMVFVHARNATVRTAMSLIERAK K A G A R N 2 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 3 0 0 12 0 1350.6979 Q8N3C0 Q8N3C0 714 725 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.0014893 40.861 By matching By MS/MS 1 2 1.3449 1.1691 14.642 3 Median 1.1602 1.1691 NaN 1 0 Median 1.5287 1.2542 19.895 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14212000 5643600 8568500 1605400 514970 1090500 12607000 5128600 7478000 0 0 0 0 0 0 0 0 0 0 0 0 1142 3366 1191 5733;5734;5735 5895 5895 1 AGHYAASIIIR LSQLVSDKPLTECIRAGHYAASIIIRRTGC ECIRAGHYAASIIIRRTGCTFPEKPDFH__ R A G I R R 3 1 0 0 0 0 0 1 1 3 0 0 0 0 0 1 0 0 1 0 0 0 11 0 1170.6509 P55263 P55263 339 349 ADK Adenosine kinase yes yes 2 0.0018537 56.729 By MS/MS By MS/MS By matching 1 1 1 1.0623 1.1082 15.222 3 Median 1.1075 1.1082 NaN 1 0 Median 0.99884 0.86976 NaN 1 0 Median 1.0623 1.1517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35774000 16761000 19013000 26612000 12698000 13914000 5981500 2818700 3162800 3180300 1244300 1936000 0 0 0 0 0 0 0 0 0 1143 2497 1192 5736;5737;5738 5896;5897;5898;5899 5899 4 AGIATHFVDSEK LALTGFRLKGRDVYRAGIATHFVDSEKLAM VYRAGIATHFVDSEKLAMLEEDLLALKSPS R A G E K L 2 0 0 1 0 0 1 1 1 1 0 1 0 1 0 1 1 0 0 1 0 0 12 0 1273.6303 Q6NVY1;H7C400 Q6NVY1 210 221 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 2;3 0.00039479 79.974 By MS/MS By MS/MS By matching By matching 2 1 2 1 1.2177 1.1577 27.025 6 Median 0.9951 0.92875 26.424 2 0 Median 1.7194 1.4805 NaN 1 0 Median 1.0476 1.0163 23.16 2 0 Median 1.7491 1.4725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14949000 6841400 8107400 9431400 4541300 4890100 1773700 648120 1125600 2855300 1271900 1583400 888380 380170 508210 0 0 0 0 0 0 1144 3146 1193 5739;5740;5741;5742;5743;5744 5900;5901;5902;5903;5904 5900 5 AGIATQFSTANGQVNLR SSFEQPFRAPYHGSRAGIATQFSTANGQVN IATQFSTANGQVNLRGPGTSAEFSEFPLVN R A G L R G 3 1 2 0 0 2 0 2 0 1 1 0 0 1 0 1 2 0 0 1 0 0 17 0 1746.9013 Q9UQR1;G5E9X2 Q9UQR1 742 758 ZNF148 Zinc finger protein 148 yes no 2 6.333E-11 90.146 By MS/MS 1 0.90884 0.97543 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90884 0.97543 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2838200 1482900 1355300 0 0 0 0 0 0 2838200 1482900 1355300 0 0 0 0 0 0 0 0 0 1145 4364 1194 5745 5905 5905 1 AGIEAVLLSLHPGFR PARQLPQRLLPGALRAGIEAVLLSLHPGFR AGIEAVLLSLHPGFRVGFNSLGGLASV___ R A G F R V 2 1 0 0 0 0 1 2 1 1 3 0 0 1 1 1 0 0 0 1 0 0 15 0 1578.8882 H0YN11;A0A286YET3;Q6ZNW5 H0YN11 188 202 GDPGP1 GDP-D-glucose phosphorylase 1 yes no 2 0.00044858 49.5 By MS/MS 1 1.8561 1.5934 NaN 1 Median NaN NaN NaN 0 0 Median 1.8561 1.5934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1159700 374820 784910 0 0 0 1159700 374820 784910 0 0 0 0 0 0 0 0 0 0 0 0 1146 349 1195 5746 5906 5906 1 AGIEGPLLASDVGR RPLLPKDMERLTSLRAGIEGPLLASDVGRD RAGIEGPLLASDVGRDRSAASPVVSSMPER R A G G R D 2 1 0 1 0 0 1 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 14 0 1353.7252 P18583;H7C1M2 P18583 1750 1763 SON Protein SON yes no 2 7.4957E-08 124.1 By MS/MS 1 0.89561 0.91512 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89561 0.91512 NaN 1 0 Median NaN NaN NaN 0 0 Median 19057000 8899400 10157000 0 0 0 0 0 0 0 0 0 0 0 0 19057000 8899400 10157000 0 0 0 1147 2058 1196 5747 5907;5908 5907 2 AGIFQPHVR GLSETILAVGLVKPKAGIFQPHVRHLLVLA GLVKPKAGIFQPHVRHLLVLATPVDIVILG K A G V R H 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 9 0 1023.5614 O75694;E9PF10 O75694 154 162 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0020876 74.415 By MS/MS 1 0.87805 0.95587 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87805 0.95587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1692300 849100 843200 0 0 0 0 0 0 1692300 849100 843200 0 0 0 0 0 0 0 0 0 1148 1692 1197 5748 5909 5909 1 AGIFQSVK YRNYDVMKDFEEMRKAGIFQSVK_______ DFEEMRKAGIFQSVK_______________ K A G V K - 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 848.4756 P09669 P09669 68 75 COX6C Cytochrome c oxidase subunit 6C yes yes 2 0.0025916 124.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.92324 0.81828 17.752 6 Median 0.7115 0.63832 NaN 1 0 Median 1.1428 0.93325 4.7874 2 0 Median NaN NaN NaN 0 0 Median 0.91522 0.74218 NaN 1 0 Median 0.93134 0.98438 NaN 1 0 Median 0.88711 0.72268 NaN 1 0 Median 212640000 109730000 102910000 107700000 61343000 46360000 93008000 42335000 50673000 0 0 0 2338900 1184400 1154500 6732100 3419800 3312300 2859400 1444600 1414800 1149 1921 1198 5749;5750;5751;5752;5753;5754 5910;5911;5912;5913;5914;5915;5916;5917;5918;5919;5920;5921;5922 5916 13 AGIISTVEVLK VDRLGLQNDLFSLARAGIISTVEVLKVMEA SLARAGIISTVEVLKVMEAFVNEPNYTVWS R A G L K V 1 0 0 0 0 0 1 1 0 2 1 1 0 0 0 1 1 0 0 2 0 0 11 0 1128.6754 E9PLK3;P55786 E9PLK3 624 634 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.00071474 64.04 By MS/MS By matching By matching By matching 4 2 1 2 1.3295 1.1819 14.054 9 Median 1.1657 1.1217 11.091 4 0 Median 1.3943 1.212 3.5625 2 0 Median 0.96117 1.0351 NaN 1 0 Median 1.6519 1.4623 3.5537 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42918000 20579000 22339000 33836000 16479000 17358000 6453100 2818500 3634500 2403400 1178900 1224500 225030 102700 122330 0 0 0 0 0 0 1150 960 1199 5755;5756;5757;5758;5759;5760;5761;5762;5763 5923;5924 5924 2 AGILTTLNAR AIHEVMEQQTISIAKAGILTTLNARCSILA ISIAKAGILTTLNARCSILAAANPAYGRYN K A G A R C 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1028.5978 P33993 P33993 472 481 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.00029045 126.28 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 0.94923 0.86546 68.409 6 Median 0.96328 0.91075 NaN 1 0 Median 1.0625 0.92044 17.747 2 0 Median 0.81466 0.82243 NaN 1 0 Median 1.1499 0.99069 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.15981 0.17364 NaN 1 0 Median 89777000 45130000 44647000 36541000 20225000 16317000 22114000 9755900 12358000 29181000 14161000 15020000 1714100 803510 910560 0 0 0 226280 184980 41307 1151 2225 1200 5764;5765;5766;5767;5768;5769;5770 5925;5926;5927;5928;5929 5928 5 AGINQNMDAVTEELQAK INSSEADEDGIRDEKAGINQNMDAVTEELQ INQNMDAVTEELQAKTGSLEEMTQRLREFQ K A G A K T 3 0 2 1 0 2 2 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 17 0 1830.8782 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4985 5001 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 1.9441E-13 128.85 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 0.97249 1.0079 66.462 6 Median 1.0608 1.0425 7.708 2 0 Median 1.3803 1.207 NaN 1 0 Median 0.96143 1.029 NaN 1 0 Median 0.95356 0.87632 NaN 1 0 Median 0.20234 0.2074 NaN 1 0 Median NaN NaN NaN 0 0 Median 48267000 25086000 23181000 32295000 15708000 16587000 2277300 932940 1344400 8903600 5266400 3637300 304110 142710 161400 4487100 3036200 1450800 0 0 0 1152 1220 1201 5771;5772;5773;5774;5775;5776 5930;5931;5932;5933 5932 4 AGIPVYAWK NIFSTQDHAAAAIAKAGIPVYAWKGETDEE AAAIAKAGIPVYAWKGETDEEYLWCIEQTL K A G W K G 2 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 1 0 0 9 0 1003.5491 P23526 P23526 95 103 AHCY Adenosylhomocysteinase yes yes 1;2 0.0076348 50.898 By MS/MS By MS/MS By MS/MS By matching 6 5 1 1 1.1236 1.0767 14.659 13 Median 1.0621 0.98469 12.763 6 0 Median 1.3468 1.1188 18.309 5 0 Median 1.1085 1.0767 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2082 1.277 NaN 1 0 Median NaN NaN NaN 0 0 Median 71266000 33533000 37733000 56357000 26913000 29444000 5412200 2291800 3120400 9102400 4164300 4938100 0 0 0 394640 164340 230300 0 0 0 1153 2116 1202 5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788;5789 5934;5935;5936;5937;5938;5939;5940;5941 5935 7 AGIQQVYTR GLKQIGLDQIWDDLRAGIQQVYTRQSMAKS IWDDLRAGIQQVYTRQSMAKSRYMELYTHV R A G T R Q 1 1 0 0 0 2 0 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 9 0 1034.5509 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4;A0A590UJA0;A0A590UJM8;A0A590UJ59;A0A590UJ97 A0A0C4DGX4 26 34 CUL1 Cullin-1 yes no 2 0.00044777 117.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.2286 1.213 30.606 7 Median 1.0166 0.99904 NaN 1 0 Median 1.5478 1.2959 27.791 2 1 Median 1.1382 1.213 NaN 1 0 Median 1.7931 1.4145 13.858 2 1 Median 0.6172 0.64819 NaN 1 0 Median NaN NaN NaN 0 0 Median 17656000 9204600 8451600 2423900 1183400 1240500 3103300 1446700 1656600 6066200 3178400 2887800 3409200 1338300 2070900 2653600 2057900 595760 0 0 0 1154 256 1203 5790;5791;5792;5793;5794;5795;5796 5942;5943;5944;5945;5946 5944 5 AGITTIEAVK ______________________________ ______________________________ M A G V K R 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 0 1001.5757 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 2 11 TPM3 yes no 2 0.00053698 73.665 By MS/MS By matching By MS/MS By matching 1 3 1 1 1.287 1.1124 17.258 6 Median 1.1673 1.0557 NaN 1 0 Median 1.3829 1.1722 15.056 3 0 Median 0.90595 0.8492 NaN 1 0 Median 1.5042 1.2845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122520000 57853000 64668000 99671000 46547000 53124000 6818300 3041400 3776900 15309000 8001400 7308000 721950 262270 459680 0 0 0 0 0 0 1155 63 1204 5797;5798;5799;5800;5801;5802 5947;5948 5947 2 AGITTIEAVKR ______________________________ ______________________________ M A G K R K 2 1 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 1 0 0 11 1 1157.6768 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 2 12 TPM3 yes no 2 1.4063E-06 161.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 1 1.1544 1.0647 16.595 11 Median 1.1115 1.1561 4.6501 2 0 Median 1.3463 1.2114 1.9784 2 0 Median 0.89568 0.96348 6.5049 2 0 Median 1.27 1.0647 9.4069 3 0 Median 0.88105 0.93745 NaN 1 0 Median 0.89761 0.70755 NaN 1 0 Median 837480000 390070000 447410000 509640000 228010000 281640000 78661000 33346000 45315000 157380000 85346000 72031000 16453000 7203000 9249900 75242000 36123000 39119000 99250 41197 58052 1156 63 1205 5803;5804;5805;5806;5807;5808;5809;5810;5811;5812;5813 5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964 5955 16 AGITTTLNSR AIHEAMEQQTISIAKAGITTTLNSRCSVLA ISIAKAGITTTLNSRCSVLAAANSVFGRWD K A G S R C 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 3 0 0 0 0 0 10 0 1032.5564 P33992;B1AHB1 P33992 472 481 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.00067528 93.143 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2329 1.0566 37.271 5 Median 0.84125 0.79696 NaN 1 0 Median 1.237 1.0612 0.61049 2 0 Median 1.6219 1.6493 NaN 1 1 Median 0.70478 0.60714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36846000 15852000 20994000 7406800 3952600 3454200 15154000 6279200 8875000 12916000 4906300 8009400 1368900 713960 654910 0 0 0 0 0 0 1157 2224 1206 5814;5815;5816;5817;5818 5965;5966;5967;5968 5967 3 AGIVQEDVQPPGLK LMRLEEYKKEQAINRAGIVQEDVQPPGLKV RAGIVQEDVQPPGLKVWSDPFGRK______ R A G L K V 1 0 0 1 0 2 1 2 0 1 1 1 0 0 2 0 0 0 0 2 0 0 14 0 1449.7827 Q8N5G0 Q8N5G0 45 58 SMIM20 Small integral membrane protein 20 yes yes 2 5.1495E-08 103.7 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 0.88868 0.80827 25.554 6 Median 0.60828 0.54773 8.9856 2 1 Median 1.1541 0.94487 NaN 1 0 Median 0.77683 0.78955 NaN 1 0 Median 1.2707 0.94876 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0166 0.82742 NaN 1 0 Median 15366000 8113400 7252400 5797000 3450500 2346400 7659300 3627700 4031600 1216200 679070 537170 339660 154030 185630 0 0 0 353620 202120 151500 1158 3378 1207 5819;5820;5821;5822;5823;5824 5969;5970;5971;5972;5973 5971 5 AGIVTSLQAR SIHEAMEQQSISISKAGIVTSLQARCTVIA ISISKAGIVTSLQARCTVIAAANPIGGRYD K A G A R C 2 1 0 0 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1014.5822 P49736;H0Y8E6 P49736 614 623 MCM2 DNA replication licensing factor MCM2 yes no 2 0.00035707 83.265 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 1 1.2359 1.0621 19.037 9 Median 1.018 0.97946 NaN 1 0 Median 1.2359 1.0197 14.856 3 0 Median 0.82475 0.89076 24.881 2 1 Median 1.5577 1.3254 12.493 2 0 Median NaN NaN NaN 0 0 Median 1.3544 1.1135 NaN 1 0 Median 99994000 47443000 52552000 23170000 10843000 12328000 48500000 21205000 27296000 24231000 13757000 10474000 3564500 1414900 2149600 0 0 0 527580 222970 304610 1159 2393 1208 5825;5826;5827;5828;5829;5830;5831;5832;5833 5974;5975;5976;5977;5978;5979;5980;5981 5974 8 AGKDLVSSLTSGLLTIGDR GPAVSGAHNTIICARAGKDLVSSLTSGLLT LVSSLTSGLLTIGDRFGGALDAAAKMFSKA R A G D R F 1 1 0 2 0 0 0 3 0 1 4 1 0 0 0 3 2 0 0 1 0 0 19 1 1902.0422 P53396 P53396 916 934 ACLY ATP-citrate synthase yes yes 3 0.010361 22.435 By MS/MS By matching By matching 1 1 1 1.2006 1.2491 15.418 3 Median 1.2006 1.2491 NaN 1 0 Median 1.6618 1.5467 NaN 1 0 Median 0.99858 1.1466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4820300 2106100 2714200 4149000 1812300 2336700 362050 155090 206960 309220 138720 170500 0 0 0 0 0 0 0 0 0 1160 2467 1209 5834;5835;5836 5982 5982 1 AGKEPGLQIWR PWPNSMVVEHPEFLKAGKEPGLQIWRVEKF EFLKAGKEPGLQIWRVEKFDLVPVPTNLYG K A G W R V 1 1 0 0 0 1 1 2 0 1 1 1 0 0 1 0 0 1 0 0 0 0 11 1 1253.6881 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14;A0A0U1RQL8;Q5T0I0 A0A0A0MS51 28 38 GSN Gelsolin yes no 3 9.714E-05 72.434 By MS/MS 1 0.80566 0.82587 NaN 1 Median 0.80566 0.82587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3656100 1977300 1678800 3656100 1977300 1678800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1161 176 1210 5837 5983;5984 5983 2 AGKFPSLLTHNENMVAK LIKQIPRILGPGLNKAGKFPSLLTHNENMV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K A G A K V 2 0 2 0 0 0 1 1 1 0 2 2 1 1 1 1 1 0 0 1 0 0 17 1 1855.9615 P62906 P62906 131 147 RPL10A 60S ribosomal protein L10a yes yes 2;3;4 4.0784E-08 79.089 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 3 3 3 3 1.0232 0.99511 10.949 19 Median 0.95675 0.96805 12.784 4 0 Median 1.019 0.92853 0.49484 3 0 Median 1.0193 1.0183 1.866 3 1 Median 1.1193 1.0077 5.6584 3 1 Median 1.0232 1.097 3.3502 3 0 Median 1.1409 0.99018 22.176 3 0 Median 820620000 398070000 422540000 545770000 265760000 280010000 73735000 34232000 39503000 32008000 15448000 16560000 15124000 6920100 8203500 150440000 74162000 76276000 3541400 1547800 1993600 1162 2608 1211;1212 5838;5839;5840;5841;5842;5843;5844;5845;5846;5847;5848;5849;5850;5851;5852;5853;5854;5855;5856;5857 5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002;6003;6004;6005;6006 6002 1269 22 AGKGEVTFEDVK APDALFMVAFQLFDKAGKGEVTFEDVKQVF FDKAGKGEVTFEDVKQVFGQTTIHQHIPFN K A G V K Q 1 0 0 1 0 0 2 2 0 0 0 2 0 1 0 0 1 0 0 2 0 0 12 1 1278.6456 Q9UJS0 Q9UJS0 102 113 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 3 0.010343 27.33 By MS/MS By matching By matching 1 1 1 0.62143 0.59057 63.273 3 Median 0.62143 0.59057 NaN 1 0 Median 1.3853 1.3038 NaN 1 0 Median 0.36399 0.37327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5004200 2836900 2167300 2477000 1449800 1027300 1059700 442040 617670 1467500 945040 522430 0 0 0 0 0 0 0 0 0 1163 4297 1213 5858;5859;5860 6007 6007 1 AGKIVVNLTGR KHGYIGEFEIIDDHRAGKIVVNLTGRLNKC DDHRAGKIVVNLTGRLNKCGVISPRFDVQL R A G G R L 1 1 1 0 0 0 0 2 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 1 1126.6822 H3BN98;I3L3P7;P62244;I3L246 I3L3P7 58 68 RPS15A 40S ribosomal protein S15a no no 2 0.01328 51.445 By MS/MS 1 1.0284 0.908 NaN 1 Median NaN NaN NaN 0 0 Median 1.0284 0.908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3739900 1865100 1874800 0 0 0 3739900 1865100 1874800 0 0 0 0 0 0 0 0 0 0 0 0 1164 1289;1213 1214 5861 6008;6009 6009 2 AGKLDPHLVLDQLR NPNFVRCIIPNHEKKAGKLDPHLVLDQLRC KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K A G L R C 1 1 0 2 0 1 0 1 1 0 4 1 0 0 1 0 0 0 0 1 0 0 14 1 1573.894 P35579;P35580 P35579 680 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.00030694 80.979 By MS/MS By MS/MS 2 1 1.0607 1.0852 11.553 3 Median 1.0401 1.0459 5.2097 2 1 Median NaN NaN NaN 0 0 Median 1.0607 1.2644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22490000 11818000 10672000 19869000 10651000 9218000 0 0 0 2620800 1167200 1453600 0 0 0 0 0 0 0 0 0 1165 2244;2245 1215 5862;5863;5864 6010;6011;6012;6013 6011 3 AGKPVICATQMLESMIK KVFLAQKMMIGRCNRAGKPVICATQMLESM KPVICATQMLESMIKKPRPTRAEGSDVANA R A G I K K 2 0 0 0 1 1 1 1 0 2 1 2 2 0 1 1 1 0 0 1 0 0 17 1 1875.962 H3BTN5;P14618;B4DNK4 P14618 320 336 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3 1.3587E-12 126.91 By MS/MS By MS/MS 4 5 1.0084 0.96058 14.927 9 Median 1.0055 1.0124 21.993 4 0 Median 1.0084 0.95423 5.0356 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112860000 54954000 57905000 16428000 8047800 8380200 96431000 46906000 49525000 0 0 0 0 0 0 0 0 0 0 0 0 1166 2005;1237 1216 5865;5866;5867;5868;5869;5870;5871;5872;5873 6014;6015 6015 2 AGKVEAQHILASAPTDR GAGRMAGAIAQGLIRAGKVEAQHILASAPT KVEAQHILASAPTDRNLCHFQALGCRTTHS R A G D R N 4 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 17 1 1762.9326 A0A0A0MQS1;Q53H96 A0A0A0MQS1 42 58 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 3 0.0061174 36.112 By MS/MS By MS/MS 1 1 1.3019 1.2939 48.995 2 Median 0.87023 0.91501 NaN 1 0 Median 1.9478 1.8296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4332800 1850000 2482800 3380600 1528800 1851900 952130 321230 630900 0 0 0 0 0 0 0 0 0 0 0 0 1167 146 1217 5874;5875 6016;6017 6017 2 AGLAMPGPPLGPVLGQR LRKPEVGGVIRAIVRAGLAMPGPPLGPVLG LAMPGPPLGPVLGQRGVSINQFCKEFNERT R A G Q R G 2 1 0 0 0 1 0 4 0 0 3 0 1 0 4 0 0 0 0 1 0 0 17 0 1629.9025 Q9Y3B7;E9PQB6 Q9Y3B7 26 42 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 2.154E-05 65.5 By MS/MS By MS/MS 1 1 0.48772 0.46064 10.797 2 Median 0.45172 0.42678 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52658 0.49719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8249600 5244100 3005500 6018600 3844300 2174300 0 0 0 2231000 1399900 831130 0 0 0 0 0 0 0 0 0 1168 4416 1218 5876;5877 6018;6019;6020;6021 6018 4 AGLAPLEVR VRARVLQSFTVDSSKAGLAPLEVRVLGPRG TVDSSKAGLAPLEVRVLGPRGLVEPVNVVD K A G V R V 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 9 0 924.53927 O75369;E7EN95 O75369 1450 1458 FLNB Filamin-B yes no 2 0.0030194 67.993 By MS/MS By MS/MS By matching 2 2 1 0.86887 0.8154 31.246 5 Median 0.86783 0.83078 2.6184 2 1 Median 0.94142 0.7769 6.8397 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43174 0.40304 NaN 1 0 Median 71593000 36775000 34818000 26330000 13904000 12426000 44915000 22629000 22285000 0 0 0 0 0 0 0 0 0 348850 241900 106950 1169 1664 1219 5878;5879;5880;5881;5882 6022;6023;6024 6023 3 AGLASPEEEDAVGKEPLK RAQALRALLLAHKKKAGLASPEEEDAVGKE ASPEEEDAVGKEPLKAAPKKRQLLDSDEEQ K A G L K A 3 0 0 1 0 0 4 2 0 0 2 2 0 0 2 1 0 0 0 1 0 0 18 1 1838.9262 Q9UNS1 Q9UNS1 1145 1162 TIMELESS Protein timeless homolog yes yes 3 2.9794E-06 55.864 By MS/MS 1 0.47348 0.54422 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47348 0.54422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5837700 4231300 1606400 0 0 0 0 0 0 5837700 4231300 1606400 0 0 0 0 0 0 0 0 0 1170 4349 1220 5883 6025 6025 1 AGLAYHLR MTLKCHHCGKPYRSKAGLAYHLRSEHGPIS GKPYRSKAGLAYHLRSEHGPISFFPESGQP K A G L R S 2 1 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 899.49774 G3XAG1;Q96ME7 G3XAG1 299 306 ZNF512 Zinc finger protein 512 yes no 2 0.014501 50.966 By matching By MS/MS By matching 1 2 1 1.1302 1.1599 28.937 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82616 0.72918 NaN 1 0 Median 1.1302 1.1599 16.387 2 0 Median 1.6216 1.3794 NaN 1 0 Median 9677000 4141600 5535500 0 0 0 0 0 0 0 0 0 816330 423820 392510 8101700 3415400 4686300 759000 302290 456710 1171 1124 1221 5884;5885;5886;5887 6026 6026 1 AGLELLSDQGYR ______________________________ ______________________________ M A G Y R V 1 1 0 1 0 1 1 2 0 0 3 0 0 0 0 1 0 0 1 0 0 0 12 0 1320.6674 Q9NPD3;E9PPI9 Q9NPD3 2 13 EXOSC4 Exosome complex component RRP41 yes no 2 5.74E-05 141.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 1 2 1.1661 1.0833 31.828 10 Median 1.1358 1.0931 49.397 4 0 Median 1.3683 1.1654 NaN 1 0 Median 1.1743 1.1685 10.708 2 0 Median 1.2824 1.0636 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1661 0.94384 2.8375 2 0 Median 127620000 57906000 69717000 15297000 7117000 8179900 1040400 423110 617280 102710000 46537000 56169000 3766500 1589100 2177300 0 0 0 4814200 2240100 2574100 1172 4046 1222 5888;5889;5890;5891;5892;5893;5894;5895;5896;5897 6027;6028;6029;6030;6031;6032;6033;6034;6035;6036;6037 6027 11 AGLESSEGGGGPERPGAR DAGKIPFCDAKEEIRAGLESSEGGGGPERP ESSEGGGGPERPGARGQRQNIVWRNVVLMS R A G A R G 2 2 0 0 0 0 3 6 0 0 1 0 0 0 2 2 0 0 0 0 0 0 18 1 1682.7972 Q86SK9 Q86SK9 22 39 SCD5 Stearoyl-CoA desaturase 5 yes yes 3 0.00071469 33.697 By MS/MS 1 1.1792 1.1052 NaN 1 Median NaN NaN NaN 0 0 Median 1.1792 1.1052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2282900 1121700 1161200 0 0 0 2282900 1121700 1161200 0 0 0 0 0 0 0 0 0 0 0 0 1173 3263 1223 5898 6038 6038 1 AGLGEEFEKEIR HKGTTYIFRLAAKNRAGLGEEFEKEIRTPE KNRAGLGEEFEKEIRTPEDLPSGFPQNLHV R A G I R T 1 1 0 0 0 0 4 2 0 1 1 1 0 1 0 0 0 0 0 0 0 0 12 1 1376.6936 P10586;H0Y7Z9;H0Y6Z7 P10586 898 909 PTPRF Receptor-type tyrosine-protein phosphatase F yes no 3 0.029308 22.329 By MS/MS By matching 1 1 1.0345 0.98188 17.614 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76958 0.8669 NaN 1 0 Median 1.3906 1.1121 NaN 1 0 Median 5161400 2794100 2367300 0 0 0 0 0 0 0 0 0 0 0 0 3744400 2199100 1545300 1417100 595040 822010 1174 1939 1224 5899;5900 6039 6039 1 AGLGHPAAFGR ______________________________ ______________________________ M A G G R A 3 1 0 0 0 0 0 3 1 0 1 0 0 1 1 0 0 0 0 0 0 0 11 0 1052.5516 O94760 O94760 2 12 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 2 0.00019001 110.31 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.0111 0.91878 29.74 6 Median 0.82619 0.78759 10.914 2 0 Median 1.0038 0.83471 NaN 1 0 Median 1.0185 0.99221 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1756 1.2749 NaN 1 0 Median 1.804 1.607 NaN 1 0 Median 127840000 63900000 63943000 83738000 43386000 40353000 21884000 10612000 11271000 11974000 5387500 6586300 0 0 0 6541800 3015000 3526800 3706400 1500000 2206300 1175 1722 1225 5901;5902;5903;5904;5905;5906 6040;6041;6042;6043 6040 4 AGLGSGLSLSGLVHPELSR AGLLLGEAGKQLRRRAGLGSGLSLSGLVHP SGLSLSGLVHPELSRSGELAVRALEQFATV R A G S R S 1 1 0 0 0 0 1 4 1 0 5 0 0 0 1 4 0 0 0 1 0 0 19 0 1849.0058 P49748;G3V1M7 P49748 513 531 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2;3 2.3202E-05 45.257 By MS/MS By MS/MS 2 2 0.99877 0.86686 7.4558 3 Median 0.82373 0.77089 NaN 1 0 Median 1.012 0.87602 1.4879 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117490000 62637000 54855000 78539000 43749000 34790000 38953000 18888000 20065000 0 0 0 0 0 0 0 0 0 0 0 0 1176 2394 1226 5907;5908;5909;5910 6044;6045;6046;6047;6048;6049 6044 6 AGLLEPEVFHLNPAK TNMTVSAIRFLKTLRAGLLEPEVFHLNPAK AGLLEPEVFHLNPAKSDTITFKRLIRFVPS R A G A K S 2 0 1 0 0 0 2 1 1 0 3 1 0 1 2 0 0 0 0 1 0 0 15 0 1633.8828 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 168 182 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 3 0.027696 17.629 By MS/MS By matching By matching 1 1 2 0.85515 0.81576 23.465 4 Median 0.75778 0.72247 NaN 1 0 Median 1.0904 0.92109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75837 0.82442 36.821 2 0 Median NaN NaN NaN 0 0 Median 14822000 7503400 7318200 6246300 3539600 2706700 6270400 2801200 3469200 0 0 0 0 0 0 2304900 1162600 1142300 0 0 0 1177 317 1227 5911;5912;5913;5914 6050;6051 6051 2 AGLLGQPR FQEYHIQQNEALAAKAGLLGQPR_______ NEALAAKAGLLGQPR_______________ K A G P R - 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 0 810.47119 Q9Y5J7;A0A1W2PRH9;A0A1W2PQS5;G3V502 Q9Y5J7 82 89 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes no 2 0.0068836 69.383 By MS/MS By matching By matching By matching 1 1 1 1 1.0861 0.96478 13.488 4 Median 0.97147 0.94773 NaN 1 0 Median 1.2143 0.98214 NaN 1 0 Median 0.91793 0.91764 NaN 1 0 Median 1.5494 1.2355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5250900 2833400 2417500 3349700 1936600 1413100 1011200 409500 601680 539650 327920 211740 350310 159380 190920 0 0 0 0 0 0 1178 4459 1228 5915;5916;5917;5918 6052;6053 6053 2 AGLLHNILPSQSTDLHHSVGTELLSLVYK SRLAAVVSACKQLHRAGLLHNILPSQSTDL LHHSVGTELLSLVYKGIAPGDERQCLPSLD R A G Y K G 1 0 1 1 0 1 1 2 3 1 7 1 0 0 1 4 2 0 1 2 0 0 29 0 3141.6822 P78527 P78527 1461 1489 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3;5 2.7308E-09 45.957 By matching By MS/MS 1 5 1.003 0.88885 50.03 6 Median 1.2463 1.4166 NaN 1 0 Median 0.90087 0.79895 46.244 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62122000 27659000 34463000 1116500 608940 507580 61005000 27050000 33955000 0 0 0 0 0 0 0 0 0 0 0 0 1179 2647 1229 5919;5920;5921;5922;5923;5924 6054;6055;6056 6055 3 AGLLPSGPRPGYAAIQALLSSR TDSFLTGQMLLQDLKAGLLPSGPRPGYAAI PRPGYAAIQALLSSRGVRPVSFSDWEKLDA K A G S R G 4 2 0 0 0 1 0 3 0 1 4 0 0 0 3 3 0 0 1 0 0 0 22 1 2194.2222 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 427 448 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 0.00010621 34.346 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.70739 0.7451 45.051 5 Median 0.58988 0.59569 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57113 0.61837 NaN 1 0 Median 1.451 1.3534 NaN 1 0 Median 0.70739 0.7451 NaN 1 0 Median 1.7582 1.5545 NaN 1 0 Median 24115000 14570000 9545000 2837900 1741900 1096000 0 0 0 19594000 12067000 7526600 1087700 468410 619260 493740 256030 237710 102180 36813 65362 1180 2102 1230 5925;5926;5927;5928;5929 6057;6058;6059;6060;6061 6060 5 AGLLQPPVR LQTQPQPLLQQPQQKAGLLQPPVRIVSQPQ QQPQQKAGLLQPPVRIVSQPQPARRLDPPS K A G V R I 1 1 0 0 0 1 0 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 9 0 949.5709 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 276 284 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.00047342 122.78 By MS/MS By MS/MS 4 2 0.75424 0.72425 9.3792 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67263 0.72983 13.649 2 1 Median 0.84075 0.72425 8.7766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39750000 17109000 22641000 0 0 0 0 0 0 31659000 12635000 19024000 8091100 4474100 3617000 0 0 0 0 0 0 1181 3331 1231 5930;5931;5932;5933;5934;5935 6062;6063;6064;6065;6066;6067 6067 6 AGLLQVYIHTQK THQSLLMLMDSPLNRAGLLQVYIHTQKNVL LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT R A G Q K N 1 0 0 0 0 2 0 1 1 1 2 1 0 0 0 0 1 0 1 1 0 0 12 0 1369.7718 Q92979;V9GYP5;A0A087WWQ2;A0A087WVM7 Q92979 103 114 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2;3 0.00010895 90.906 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 2 1.124 1.0076 15.676 8 Median 1.0895 1.0151 NaN 1 0 Median 1.0691 0.91372 NaN 1 0 Median 1.2201 1.1513 4.4581 2 0 Median 1.2104 1.0001 NaN 1 0 Median 1.1595 1.1796 NaN 1 0 Median 0.96302 0.80557 4.0434 2 0 Median 29683000 12465000 17218000 4456900 1562000 2894900 933030 332640 600390 10825000 4762400 6062200 1187700 515820 671860 7030700 2752000 4278700 5250400 2540000 2710400 1182 3571 1232 5936;5937;5938;5939;5940;5941;5942;5943 6068;6069;6070;6071;6072;6073 6070 6 AGLLTEQAPGDTLTAVESK SYGPEHLLTFSNLRRAGLLTEQAPGDTLTA TEQAPGDTLTAVESKVSKLVTDKAAGKITD R A G S K V 3 0 0 1 0 1 2 2 0 0 3 1 0 0 1 1 3 0 0 1 0 0 19 0 1899.9789 F5H008;A0A2R8YDQ0;Q9H267 F5H008 413 431 VPS33B Vacuolar protein sorting-associated protein 33B yes no 2 0.05355 30.059 By MS/MS 1 1.1559 1.1121 NaN 1 Median 1.1559 1.1121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3097800 1468300 1629500 3097800 1468300 1629500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1183 397 1233 5944 6074 6074 1 AGLNCSTENMPIK CYGYEGIDAVKEALRAGLNCSTENMPIKIN LRAGLNCSTENMPIKINLIAPPRYVMTTTT R A G I K I 1 0 2 0 1 0 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 0 13 0 1433.6643 P05198;G3V4T5;H0YJS4 P05198 214 226 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.00058104 70.1 By MS/MS 1 1.006 0.84416 NaN 1 Median NaN NaN NaN 0 0 Median 1.006 0.84416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5380800 2678100 2702700 0 0 0 5380800 2678100 2702700 0 0 0 0 0 0 0 0 0 0 0 0 1184 1862 1234 5945 6075 6075 1 AGLNEMVEYITHSR VSDPLSDLKFKEVKRAGLNEMVEYITHSRD RAGLNEMVEYITHSRDVVTEAIYPEAVTMF R A G S R D 1 1 1 0 0 0 2 1 1 1 1 0 1 0 0 1 1 0 1 1 0 0 14 0 1618.7773 E9PFR3;Q14738;H0Y8C4 E9PFR3 139 152 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 3 0.0039944 30.961 By MS/MS By matching By matching 1 1 1 1.2063 1.209 13.715 3 Median 1.2063 1.209 NaN 1 0 Median 1.1125 0.96277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3928 1.2317 NaN 1 0 Median 4753700 2294800 2458900 2497400 1050500 1447000 2084700 1174800 909920 0 0 0 0 0 0 0 0 0 171590 69601 101990 1185 920 1235 5946;5947;5948 6076;6077 6076 2 AGLQFPVGR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR KTRSSRAGLQFPVGRVHRLLRKGNYSERVG R A G G R V 1 1 0 0 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 943.52395 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;A0A3B3IS11;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;C9J0D1;A0A494C189;P16104;Q96QV6;Q8IUE6 A0A0U1RR32 22 30 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ;H2AFX;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2A;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B no no 2 0.00017142 143.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 9 8 7 1.1444 0.94172 15.76 35 Median 1.2583 0.92916 24.15 4 0 Linear 1.5187 1.2877 9.2183 4 0 Linear 0.86917 0.87555 7.024 4 0 Median 1.3013 1.0973 9.2633 8 1 Median 0.84402 0.85772 3.286 8 0 Median 1.2197 0.9523 10.485 7 1 Median 29599000000 15153000000 14447000000 158040000 72762000 85275000 148140000 59610000 88531000 360540000 189790000 170750000 261150000 103670000 157480000 21530000000 11566000000 9963700000 7141200000 3160400000 3980800000 1186 308;1856;2024;1925;3312 1236 5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964;5965;5966;5967;5968;5969;5970;5971;5972;5973;5974;5975;5976;5977;5978;5979;5980;5981;5982;5983;5984 6078;6079;6080;6081;6082;6083;6084;6085;6086;6087;6088;6089;6090;6091;6092;6093;6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127;6128;6129;6130;6131;6132;6133;6134;6135;6136;6137;6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186;6187;6188;6189;6190;6191;6192;6193;6194;6195;6196 6127 119 AGLQFPVGRVHR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR SSRAGLQFPVGRVHRLLRKGNYSERVGAGA R A G H R L 1 2 0 0 0 1 0 2 1 0 1 0 0 1 1 0 0 0 0 2 0 0 12 1 1335.7524 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q8IUE6 A0A0U1RR32 22 33 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 2-B no no 3 0.00019855 66.595 By MS/MS By matching 2 1 0.75723 0.851 4.5435 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74655 0.82655 4.1225 2 0 Median 1.0233 0.87798 NaN 1 0 Median 20982000 12057000 8924700 0 0 0 0 0 0 0 0 0 0 0 0 20243000 11675000 8568400 738720 382360 356360 1187 308;1856;2024;3312 1237 5985;5986;5987 6197;6198;6199;6200;6201 6201 5 AGLQVYNK AVNCSSDFDACLITKAGLQVYNKCWKFEHC DACLITKAGLQVYNKCWKFEHCNFNDVTTR K A G N K C 1 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 891.48142 E9PNW4;A0A2U3TZL5;P13987 E9PNW4 56 63 CD59 CD59 glycoprotein yes no 2 0.014249 51.456 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0275 0.88641 11.449 5 Median NaN NaN NaN 0 0 Median 1.0275 0.88641 NaN 1 0 Median 1.0379 1.0087 4.7955 2 0 Median 0.97909 0.8005 NaN 1 0 Median 0.7698 0.81365 NaN 1 0 Median NaN NaN NaN 0 0 Median 9522300 4988300 4534000 0 0 0 2289700 1227200 1062600 6073300 3255000 2818200 755920 287900 468020 403330 218230 185100 0 0 0 1188 406 1238 5988;5989;5990;5991;5992 6202;6203 6203 2 AGLSDLELRR ______________________________ ______________________________ M A G R R E 1 2 0 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1128.6251 Q8NC56;D6RBV0 Q8NC56 2 11 LEMD2 LEM domain-containing protein 2 yes no 2 0.0016225 67.169 By MS/MS 1 1.0752 1.1693 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0752 1.1693 NaN 1 1 Median NaN NaN NaN 0 0 Median 19076000 8883000 10193000 0 0 0 0 0 0 0 0 0 0 0 0 19076000 8883000 10193000 0 0 0 1189 3415 1239 5993 6204 6204 1 AGLSQSLFER HCQLGPVVMCKKAAKAGLSQSLFERLVVLG KKAAKAGLSQSLFERLVVLGIRPIRLQVQY K A G E R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 10 0 1106.572 Q92900 Q92900 689 698 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00032889 111.95 By MS/MS By MS/MS By MS/MS 1 1 2 1.295 1.1022 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.295 1.1022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2457700 1114000 1343800 0 0 0 0 0 0 0 0 0 2457700 1114000 1343800 0 0 0 0 0 0 1190 3564 1240 5994;5995;5996;5997 6205;6206;6207;6208 6205 4 AGLTDLQR ______________________________ ______________________________ M A G Q R L 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 872.47158 O75935;X6RA56;A0A0A0MRV8;X6RLR1 O75935 2 9 DCTN3 Dynactin subunit 3 yes no 2 0.0035979 91.626 By MS/MS By matching By MS/MS By matching By matching 3 2 1 1 1 1.1789 1.0837 16.033 8 Median 1.2576 1.192 9.4186 3 1 Median 1.1955 0.97923 12.006 2 0 Median 1.0131 0.97065 NaN 1 1 Median 1.0353 0.85208 NaN 1 0 Median 1.2497 1.2686 NaN 1 0 Median NaN NaN NaN 0 0 Median 23899000 10520000 13380000 13069000 5658000 7411100 5167200 2105700 3061400 4855900 2358900 2497000 507960 265970 241990 299400 131220 168170 0 0 0 1191 1708 1241 5998;5999;6000;6001;6002;6003;6004;6005 6209;6210;6211 6209 3 AGLTDQVSHHAR LMEENIRQSVTNSIKAGLTDQVSHHARLKT SIKAGLTDQVSHHARLKTD___________ K A G A R L 2 1 0 1 0 1 0 1 2 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1290.6429 Q8NHH9 Q8NHH9 568 579 ATL2 Atlastin-2 yes yes 3 0.0015037 40.725 By MS/MS By matching By matching 2 1 1 0.85976 0.90947 19.6 4 Median NaN NaN NaN 0 0 Median 0.85887 0.80032 31.425 2 0 Median 0.80279 0.91726 NaN 1 0 Median 0.92078 0.90175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4503500 2303000 2200500 0 0 0 3645100 1891700 1753400 747840 367780 380060 110520 43449 67069 0 0 0 0 0 0 1192 3444 1242 6006;6007;6008;6009 6212 6212 1 AGLTEPVLIR LFSATLPKLLVEFARAGLTEPVLIRLDVDT VEFARAGLTEPVLIRLDVDTKLNEQLKTSF R A G I R L 1 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1067.6339 Q8TDD1 Q8TDD1 291 300 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.00051724 91.853 By matching By MS/MS By matching By MS/MS 3 1 1 2 0.95257 0.882 14.481 7 Median NaN NaN NaN 0 0 Median 1.1667 1.0036 17.402 3 0 Median 0.95586 1.0189 NaN 1 0 Median 0.95257 0.8577 NaN 1 0 Median 0.81057 0.84254 1.3926 2 0 Median NaN NaN NaN 0 0 Median 19478000 10275000 9202900 0 0 0 2744000 1229000 1514900 5945000 3164600 2780300 174340 110860 63484 10614000 5770200 4844200 0 0 0 1193 3470 1243 6010;6011;6012;6013;6014;6015;6016 6213;6214;6215 6214 3 AGLTFNHDPPLSQNQR RMREWGAEALTSLIKAGLTFNHDPPLSQNQ GLTFNHDPPLSQNQRLQLLLLNPLKEMSNI K A G Q R L 1 1 2 1 0 2 0 1 1 0 2 0 0 1 2 1 1 0 0 0 0 0 16 0 1793.8809 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 846 861 MON2 Protein MON2 homolog yes no 3 0.047678 20.737 By MS/MS 1 0.45455 0.42663 NaN 1 Median 0.45455 0.42663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14215000 10239000 3975500 14215000 10239000 3975500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1194 353 1244 6017 6216 6216 1 AGLTHLITMDLHQK RGSIVSKLLASMMCKAGLTHLITMDLHQKE KAGLTHLITMDLHQKEIQGFFNIPVDNLRA K A G Q K E 1 0 0 1 0 1 0 1 2 1 3 1 1 0 0 0 2 0 0 0 0 0 14 0 1576.8395 O60256;E7EPA1;C9JJS3;C9K0K7;C9JDU5 O60256 137 150 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 3 0.00023795 57.159 By MS/MS By matching 3 1 1.2602 1.2041 19.312 4 Median 1.2596 1.1699 22.024 3 0 Median 1.4536 1.2392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25743000 11481000 14262000 24731000 11080000 13650000 1012800 400710 612050 0 0 0 0 0 0 0 0 0 0 0 0 1195 1607 1245 6018;6019;6020;6021 6217;6218;6219;6220 6218 4 AGLTVRDPAVDR ______________________________ ______________________________ M A G D R S 2 2 0 2 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 12 1 1268.6837 P33240;E7EWR4;E9PID8 P33240 2 13 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.00014499 82.417 By MS/MS By matching 1 1 0.32462 0.3441 123.18 2 Median 0.83448 0.82216 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.12628 0.14402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49361000 40187000 9173400 7128700 3722500 3406200 0 0 0 42232000 36465000 5767200 0 0 0 0 0 0 0 0 0 1196 2222 1246 6022;6023 6221 6221 1 AGLVDDFEK PPAIDWAYYKANVAKAGLVDDFEKKFNALK KANVAKAGLVDDFEKKFNALKVPVPEDKYT K A G E K K 1 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 992.48148 O75947;F5H608 O75947 64 72 ATP5H ATP synthase subunit d, mitochondrial yes no 2 0.0028118 69.423 By MS/MS By MS/MS 2 1 1.0374 0.97874 3.0022 3 Median 1.0352 0.96951 1.3405 2 0 Median 1.1901 1.0185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43250000 20262000 22988000 31830000 15345000 16485000 11420000 4916900 6503200 0 0 0 0 0 0 0 0 0 0 0 0 1197 1711 1247 6024;6025;6026 6222;6223;6224;6225;6226 6222 5 AGLVDDFEKK PPAIDWAYYKANVAKAGLVDDFEKKFNALK ANVAKAGLVDDFEKKFNALKVPVPEDKYTA K A G K K F 1 0 0 2 0 0 1 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1120.5764 O75947;F5H608 O75947 64 73 ATP5H ATP synthase subunit d, mitochondrial yes no 2 0.024226 38.086 By MS/MS 1 1.1922 1.0543 NaN 1 Median NaN NaN NaN 0 0 Median 1.1922 1.0543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4424700 1868100 2556500 0 0 0 4424700 1868100 2556500 0 0 0 0 0 0 0 0 0 0 0 0 1198 1711 1248 6027 6227 6227 1 AGLYGLPR IGGVDMVTDDDRRWKAGLYGLPRRSGKLKD DDDRRWKAGLYGLPRRSGKLKDLSRFDASF K A G P R R 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 0 0 0 1 0 0 0 8 0 845.47594 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 42 49 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0034718 94.163 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.0012 1.0381 14.502 7 Median 0.95547 0.89667 12.024 3 0 Median 1.34 1.1055 1.6434 2 0 Median 1.0012 1.1124 NaN 1 0 Median 1.1855 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68312000 31127000 37185000 29550000 14885000 14665000 35586000 14617000 20968000 2895000 1495900 1399200 281620 128770 152850 0 0 0 0 0 0 1199 2377 1249 6028;6029;6030;6031;6032;6033;6034 6228;6229;6230;6231;6232;6233;6234;6235 6230 8 AGMAAVASPTGNCDLER DVAVYGVEVPGTEGRAGMAAVASPTGNCDL MAAVASPTGNCDLERFAQVLEKELPLYARP R A G E R F 4 1 1 1 1 0 1 2 0 0 1 0 1 0 1 1 1 0 0 1 0 0 17 0 1718.7716 Q6P1M0 Q6P1M0 548 564 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 2 6.3454E-11 107.85 By MS/MS 1 0.96191 0.79855 NaN 1 Median NaN NaN NaN 0 0 Median 0.96191 0.79855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6841500 3226200 3615300 0 0 0 6841500 3226200 3615300 0 0 0 0 0 0 0 0 0 0 0 0 1200 3152 1250 6035 6236 6236 1 AGMIFYR HVVTTTTHKTLRGCRAGMIFYRKGVKSVDP HKTLRGCRAGMIFYRKGVKSVDPKTGKEIL R A G Y R K 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 0 7 0 856.42654 P34896 P34896 264 270 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 2 0.047901 41.208 By matching By MS/MS 1 1 1.0351 0.97038 8.969 2 Median NaN NaN NaN 0 0 Median 1.0444 0.91075 NaN 1 0 Median 1.0258 1.0339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3280100 1564000 1716200 0 0 0 1008300 498030 510250 2271900 1065900 1205900 0 0 0 0 0 0 0 0 0 1201 2227 1251 6036;6037 6237 6237 1 AGMQPGLTMVVGPPGTGK RNTIQFTHTQIEAIRAGMQPGLTMVVGPPG QPGLTMVVGPPGTGKTDVAVQIISNIYHNF R A G G K T 1 0 0 0 0 1 0 5 0 0 1 1 2 0 3 0 2 0 0 2 0 0 18 0 1696.864 O60306 O60306 812 829 AQR Intron-binding protein aquarius yes yes 2 0.048509 20.663 By matching By MS/MS 1 1 0.57954 0.61885 5.091 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59214 0.64153 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56721 0.59697 NaN 1 0 Median NaN NaN NaN 0 0 Median 6883900 4396800 2487100 0 0 0 0 0 0 3580400 2121200 1459200 0 0 0 3303500 2275600 1028000 0 0 0 1202 1611 1252 6038;6039 6238 6238 1 AGMSAEQAQGLLEK EDITEPQSILAAAEKAGMSAEQAQGLLEKI KAGMSAEQAQGLLEKIATPKVKNQLKETTE K A G E K I 3 0 0 0 0 2 2 2 0 0 2 1 1 0 0 1 0 0 0 0 0 0 14 0 1431.7028 Q9Y2Q3;E9PFN5 Q9Y2Q3 145 158 GSTK1 Glutathione S-transferase kappa 1 yes no 2 2.2446E-07 152.7 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0451 0.97338 26.341 7 Median 0.95421 0.88312 13.761 2 0 Median 1.2984 1.0932 38.922 2 0 Median 1.0259 0.96456 2.9818 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8788 1.581 NaN 1 0 Median 144010000 58894000 85111000 93146000 38161000 54985000 16067000 5863800 10204000 33276000 14285000 18991000 0 0 0 0 0 0 1516300 584540 931720 1203 4386 1253;1254 6040;6041;6042;6043;6044;6045;6046 6239;6240;6241;6242;6243;6244;6245 6244 1956 7 AGMTHIVR DPSKPVHLTAFLGYKAGMTHIVREVDRPGS TAFLGYKAGMTHIVREVDRPGSKVNKKEVV K A G V R E 1 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 883.46981 P39023;H7C422;H7C3M2;F8WCR1 P39023 51 58 RPL3 60S ribosomal protein L3 yes no 2 0.036811 37.558 By matching By MS/MS By matching 2 3 4 1.2328 1.243 39.892 9 Median 1.3275 1.3158 1.2706 2 0 Median 0.81875 0.68903 33.792 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3096 1.361 29.41 4 0 Median NaN NaN NaN 0 0 Median 16718000 8008400 8709800 996490 406220 590270 11919000 5904500 6014900 0 0 0 0 0 0 3802200 1697600 2104600 0 0 0 1204 2281 1255 6047;6048;6049;6050;6051;6052;6053;6054;6055 6246;6247 6246 2 AGNALTPELAPVQIK PSGRKRRRVPRDGRRAGNALTPELAPVQIK AGNALTPELAPVQIKVEEDFGFEADEALDS R A G I K V 3 0 1 0 0 1 1 1 0 1 2 1 0 0 2 0 1 0 0 1 0 0 15 0 1520.8562 P0C1Z6 P0C1Z6 202 216 TFPT TCF3 fusion partner yes yes 2 0.0097251 30.872 By MS/MS By matching 1 1 0.69441 0.62674 11.797 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60106 0.57658 NaN 1 0 Median 0.80226 0.68127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2515500 1431400 1084100 0 0 0 0 0 0 2276700 1322900 953820 238780 108490 130290 0 0 0 0 0 0 1205 1926 1256 6056;6057 6248 6248 1 AGNASKDEIDSAVK FNSIATQGELVRSLKAGNASKDEIDSAVKM KAGNASKDEIDSAVKMLVSLKMSYKAAAGE K A G V K M 3 0 1 2 0 0 1 1 0 1 0 2 0 0 0 2 0 0 0 1 0 0 14 1 1403.6892 P23381;G3V277;G3V3P2;G3V227;G3V3X0;G3V3S7;G3V5W1;G3V3R3;G3V4N8;G3V4C7;G3V2C0;G3V339;G3V313;G3V4S4;G3V2F2 P23381 28 41 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 3 0.0051981 29.912 By MS/MS By matching 1 1 0.77437 0.78251 68.061 2 Median 1.3144 1.2662 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45621 0.48359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3225500 1103800 2121700 2947700 887290 2060400 0 0 0 277810 216550 61262 0 0 0 0 0 0 0 0 0 1206 2111 1257 6058;6059 6249 6249 1 AGNELLESSAGDDASSLR NDVLAHQATVETVNKAGNELLESSAGDDAS ELLESSAGDDASSLRSRLEAMNQCWESVLQ K A G L R S 3 1 1 2 0 0 2 2 0 0 3 0 0 0 0 4 0 0 0 0 0 0 18 0 1790.8282 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6387 6404 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 7.9795E-14 154.47 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1.0678 0.95544 14.003 6 Median 0.86938 0.8424 NaN 1 0 Median 1.036 0.84361 NaN 1 0 Median 0.9968 1.0487 NaN 1 0 Median 1.1541 1.0044 NaN 1 0 Median 1.1475 1.2053 NaN 1 0 Median 1.1007 0.90888 NaN 1 0 Median 66010000 33633000 32377000 35787000 19720000 16066000 9602600 4506600 5096000 16109000 7360300 8748600 1265000 600310 664690 2907600 1280300 1627300 339290 165390 173900 1207 1220 1258 6060;6061;6062;6063;6064;6065 6250;6251;6252;6253;6254;6255;6256;6257 6254 8 AGNFYVPAEPK QMYRTEIRMARMARKAGNFYVPAEPKLAFV MARKAGNFYVPAEPKLAFVIRIRGINGVSP K A G P K L 2 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 11 0 1191.5924 P18124;A8MUD9;C9JIJ5;C9JZ88 P18124 78 88 RPL7 60S ribosomal protein L7 yes no 2 0.0022486 54.539 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.81848 0.76299 10.034 6 Median 0.8142 0.73566 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77394 0.73527 17.099 2 0 Median 0.89638 0.74743 13.062 2 0 Median 0.77251 0.79134 NaN 1 0 Median NaN NaN NaN 0 0 Median 218900000 119630000 99276000 138590000 76740000 61848000 0 0 0 17010000 8980800 8029100 10175000 5518600 4656700 53129000 28386000 24743000 0 0 0 1208 2056 1259 6066;6067;6068;6069;6070;6071 6258;6259;6260;6261;6262;6263;6264;6265;6266;6267;6268 6265 11 AGNGQWASVIR FLNENLPESIFGAPKAGNGQWASVIRVMNP GAPKAGNGQWASVIRVMNPIQGNTLDLVQL K A G I R V 2 1 1 0 0 1 0 2 0 1 0 0 0 0 0 1 0 1 0 1 0 0 11 0 1157.5942 Q15393 Q15393 857 867 SF3B3 Splicing factor 3B subunit 3 yes yes 2 8.0026E-06 128.38 By MS/MS By MS/MS By MS/MS 1 2 1 1.2688 1.1092 30.719 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79931 0.8389 NaN 1 1 Median 1.2688 1.1092 17.914 2 0 Median 1.6099 1.6916 NaN 1 0 Median NaN NaN NaN 0 0 Median 28165000 15493000 12672000 0 0 0 0 0 0 21921000 12814000 9107300 2613900 1166700 1447200 3630400 1512900 2117400 0 0 0 1209 2946 1260 6072;6073;6074;6075 6269;6270;6271;6272 6269 4 AGNILFTLDGDIK LNYLHDNKIIHRDLKAGNILFTLDGDIKLA LKAGNILFTLDGDIKLADFGVSAKNTRTIQ K A G I K L 1 0 1 2 0 0 0 2 0 2 2 1 0 1 0 0 1 0 0 0 0 0 13 0 1375.7347 Q9H2G2 Q9H2G2 158 170 SLK STE20-like serine/threonine-protein kinase yes yes 2 7.3272E-05 85.958 By MS/MS By MS/MS 1 2 1.0463 0.90706 5.6362 3 Median 1.0489 0.99425 NaN 1 0 Median 1.035 0.90218 0.76276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15087000 7192200 7894300 2424000 1162500 1261500 12663000 6029800 6632700 0 0 0 0 0 0 0 0 0 0 0 0 1210 3942 1261 6076;6077;6078 6273;6274;6275;6276 6276 4 AGNILLNTEGHAK LEYLHFMRKIHRDIKAGNILLNTEGHAKLA IKAGNILLNTEGHAKLADFGVAGQLTDTMA K A G A K L 2 0 2 0 0 0 1 2 1 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1336.7099 Q13043;A0A087WVN8;Q13188 Q13043 152 164 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit yes no 3 0.034968 18.457 By MS/MS 1 1.2257 1.1836 NaN 1 Median 1.2257 1.1836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2201500 917910 1283600 2201500 917910 1283600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1211 2780 1262 6079 6277 6277 1 AGNILLTEPGQVK LAYLHSHTMIHRDIKAGNILLTEPGQVKLA IKAGNILLTEPGQVKLADFGSASMASPANS K A G V K L 1 0 1 0 0 1 1 2 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1338.7507 Q7L7X3;Q9H2K8;H0YF68 Q7L7X3 154 166 TAOK1;TAOK3 Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO3 no no 2 0.0028084 63.283 By MS/MS 1 1.0057 0.86197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0057 0.86197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3061200 1390900 1670300 0 0 0 0 0 0 0 0 0 3061200 1390900 1670300 0 0 0 0 0 0 1212 3227;3944 1263 6080 6278 6278 1 AGNKGYAYTFITEDQAR NHYEDYVHRAGRTGRAGNKGYAYTFITEDQ NKGYAYTFITEDQARYAGDIIKALELSGTA R A G A R Y 3 1 1 1 0 1 1 2 0 1 0 1 0 1 0 0 2 0 2 0 0 0 17 1 1903.9064 Q7L014;A0A0C4DG89 Q7L014 713 729 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 7.0435E-06 67.416 By MS/MS 1 0.99795 1.1311 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99795 1.1311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11191000 5399400 5791200 0 0 0 0 0 0 11191000 5399400 5791200 0 0 0 0 0 0 0 0 0 1213 3216 1264 6081 6279;6280 6280 2 AGNLGGGVVTIER NFEQFLQERIKVNGKAGNLGGGVVTIERSK GKAGNLGGGVVTIERSKSKITVTSEVPFSK K A G E R S 1 1 1 0 0 0 1 4 0 1 1 0 0 0 0 0 1 0 0 2 0 0 13 0 1241.6728 K7EMH1;K7ERI7;P35268;K7ELC4;K7EP65;K7EKS7;K7EJT5 K7EMH1 20 32 RPL22 60S ribosomal protein L22 yes no 2 3.8663E-07 130.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 2 1 1.2274 1.0614 15.79 12 Median 1.2208 1.2085 9.0514 3 0 Median 1.1759 1.0109 9.7602 3 0 Plateau 1.234 1.2394 NaN 1 0 Median 1.2849 1.0351 5.8531 2 0 Median 1.3406 1.3793 14.579 2 0 Median 1.2676 0.98771 NaN 1 0 Median 2012000000 903840000 1108100000 719540000 327460000 392080000 820370000 367500000 452870000 352210000 157140000 195080000 97218000 42263000 54954000 20850000 8707900 12142000 1758600 768460 990120 1214 1382 1265 6082;6083;6084;6085;6086;6087;6088;6089;6090;6091;6092;6093 6281;6282;6283;6284;6285;6286;6287;6288;6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299;6300;6301;6302;6303;6304;6305;6306;6307;6308;6309;6310 6283 30 AGNNMLLVGVHGPR AYVGQKSSFTVDCSKAGNNMLLVGVHGPRT KAGNNMLLVGVHGPRTPCEEILVKHVGSRL K A G P R T 1 1 2 0 0 0 0 3 1 0 2 0 1 0 1 0 0 0 0 2 0 0 14 0 1433.7562 P21333;Q60FE5;A0A087WWY3 P21333 2585 2598 FLNA Filamin-A no no 2;3 2.3579E-08 137.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 8 4 4 1 0.8701 0.8108 27.088 24 Median 0.91884 0.87226 26.873 8 2 Median 0.82876 0.69078 12.052 7 0 Median 1.0157 1.0923 4.8357 4 1 Linear 0.8705 0.76188 6.0628 4 1 Median NaN NaN NaN 0 0 Median 0.42717 0.39334 NaN 1 0 Median 502030000 253770000 248250000 200980000 93474000 107500000 260030000 140180000 119860000 34140000 16839000 17301000 6733300 3190600 3542700 0 0 0 143270 94403 48865 1215 2088;3120 1266;1267 6094;6095;6096;6097;6098;6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119 6311;6312;6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341 6333 850 31 AGNVLMTLEGDIR LNFLHSKRIIHRDLKAGNVLMTLEGDIRLA LKAGNVLMTLEGDIRLADFGVSAKNLKTLQ K A G I R L 1 1 1 1 0 0 1 2 0 1 2 0 1 0 0 0 1 0 0 1 0 0 13 0 1387.7129 O94804 O94804 160 172 STK10 Serine/threonine-protein kinase 10 yes yes 2 0.0132 34.532 By MS/MS 1 0.99765 1.0711 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99765 1.0711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 756900 378790 378110 0 0 0 0 0 0 756900 378790 378110 0 0 0 0 0 0 0 0 0 1216 1725 1268 6120 6342 6342 1 AGPAAAFR ______________________________ ______________________________ M A G F R R 4 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 8 0 759.40277 K7ENI6;K7ERE1;Q8N2U0 K7ENI6 2 9 TMEM256 Transmembrane protein 256 yes no 1;2 0.0035553 94.163 By MS/MS By MS/MS By matching 2 3 1 1.4178 1.1239 22.548 6 Median 0.82184 0.80036 15.409 2 0 Median 1.5404 1.3065 8.0345 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4584 1.1329 NaN 1 0 Median 17872000 9006600 8865300 11872000 6230000 5642200 5850600 2721200 3129400 0 0 0 0 0 0 0 0 0 149120 55381 93740 1217 1387 1269 6121;6122;6123;6124;6125;6126 6343;6344;6345;6346;6347;6348 6345 6 AGPAAAFRR ______________________________ ______________________________ M A G R R L 4 2 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 9 1 915.50388 K7ENI6;K7ERE1;Q8N2U0 K7ENI6 2 10 TMEM256 Transmembrane protein 256 yes no 2 1.799E-07 166.34 By MS/MS By MS/MS By matching 1 1 1 1.3027 1.1835 33.46 3 Median 0.7899 0.78811 NaN 1 0 Median 1.3881 1.1835 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3027 1.5303 NaN 1 0 Median NaN NaN NaN 0 0 Median 44554000 21462000 23092000 32984000 16753000 16231000 10413000 4266500 6146400 0 0 0 0 0 0 1156900 441970 714910 0 0 0 1218 1387 1270 6127;6128;6129 6349;6350;6351;6352;6353 6350 5 AGPESDAQYQFTGIK ______________________________ AGPESDAQYQFTGIKKYFNSYTLTGRMNCV M A G I K K 2 0 0 1 0 2 1 2 0 1 0 1 0 1 1 1 1 0 1 0 0 0 15 0 1610.7577 Q96IX5 Q96IX5 2 16 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 9.2309E-72 241.92 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.0602 0.92893 8.3872 6 Median 0.9148 0.83038 NaN 1 0 Median 1.1214 0.91828 0.90757 2 0 Median 0.91864 0.9337 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0187 1.0768 NaN 1 0 Median 1.1727 0.95473 NaN 1 0 Median 55501000 26615000 28886000 16763000 8624100 8139200 34324000 15894000 18430000 1875800 864880 1011000 0 0 0 1500500 752220 748320 1037100 479420 557660 1219 3680 1271 6130;6131;6132;6133;6134;6135 6354;6355;6356;6357;6358;6359;6360 6360 7 AGPESDAQYQFTGIKK ______________________________ GPESDAQYQFTGIKKYFNSYTLTGRMNCVL M A G K K Y 2 0 0 1 0 2 1 2 0 1 0 2 0 1 1 1 1 0 1 0 0 0 16 1 1738.8526 Q96IX5 Q96IX5 2 17 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 3 1.3117E-05 78.902 By MS/MS By MS/MS By matching 1 2 1 0.96571 0.81813 13.574 4 Median 0.86387 0.80899 NaN 1 0 Median 1.0939 0.85833 5.1951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90794 0.64965 NaN 1 0 Median NaN NaN NaN 0 0 Median 51595000 26026000 25569000 24082000 12825000 11257000 26934000 12881000 14053000 0 0 0 0 0 0 578170 319380 258800 0 0 0 1220 3680 1272 6136;6137;6138;6139 6361;6362;6363;6364;6365;6366;6367;6368;6369 6368 9 AGPGSEELTVTNAR TGTRKGQGGECEIRRAGPGSEELTVTNARY RAGPGSEELTVTNARYVPVSCEKEVDALLH R A G A R Y 2 1 1 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1400.6896 Q9BW19 Q9BW19 490 503 KIFC1 Kinesin-like protein KIFC1 yes yes 2 3.1689E-11 126.71 By MS/MS 1 0.88134 0.90058 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88134 0.90058 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8370000 4851700 3518300 0 0 0 0 0 0 8370000 4851700 3518300 0 0 0 0 0 0 0 0 0 1221 3860 1273 6140 6370 6370 1 AGPGTLSVTIEGPSK GTTGIQSEFFINTTRAGPGTLSVTIEGPSK AGPGTLSVTIEGPSKVKMDCQETPEGYKVM R A G S K V 1 0 0 0 0 0 1 3 0 1 1 1 0 0 2 2 2 0 0 1 0 0 15 0 1412.7511 O75369;E7EN95 O75369 2412 2426 FLNB Filamin-B yes no 2 3.0554E-09 99.5 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.80504 0.75486 19.702 4 Median 0.67832 0.65093 NaN 1 0 Median 0.95543 0.85548 NaN 1 0 Median 0.60379 0.66608 NaN 1 0 Median 1.0156 0.9763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104070000 55955000 48110000 29307000 15740000 13567000 59735000 31093000 28642000 13012000 8220600 4791200 2011300 901450 1109900 0 0 0 0 0 0 1222 1664 1274 6141;6142;6143;6144;6145;6146 6371;6372;6373;6374;6375;6376;6377;6378;6379;6380 6373 10 AGPIWDLR PRDLYEDELVPLFEKAGPIWDLRLMMDPLS LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF K A G L R L 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 8 0 926.4974 B7Z645;O43390;B4DT28;O60506 O43390 188 195 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0035542 89.142 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 4 3 7 3 6 6 0.92757 0.89917 11.449 28 Median 1.0043 0.98664 25.351 4 0 Median 1.1322 1.0095 15.504 3 0 Median 0.86 0.84561 7.7864 7 0 Median 1.0748 0.93011 2.2176 3 0 Median 0.89904 0.89931 3.7289 6 0 Median 1.107 0.89945 3.0964 5 0 Median 422150000 216800000 205350000 21428000 10732000 10695000 12100000 5488000 6611900 211600000 109530000 102080000 1679300 850300 828960 165070000 85416000 79651000 10271000 4782500 5488700 1223 1568;1619;634 1275 6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175 6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402;6403;6404;6405;6406 6386 26 AGPNASIISLK IIRGDDEEWNEVLNKAGPNASIISLKSDKK VLNKAGPNASIISLKSDKKRKLEAKQEPKQ K A G L K S 2 0 1 0 0 0 0 1 0 2 1 1 0 0 1 2 0 0 0 0 0 0 11 0 1069.6132 Q9H0A0 Q9H0A0 979 989 NAT10 N-acetyltransferase 10 yes yes 2 0.00041805 81.338 By MS/MS By MS/MS By MS/MS By matching 3 2 2 3 1.0284 0.91459 34.246 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77267 0.8344 6.2831 2 1 Median 1.1314 0.94721 4.9562 2 0 Median 1.3377 1.3301 31.899 2 0 Median 1.0233 0.85135 40.136 3 0 Median 41030000 20864000 20165000 0 0 0 0 0 0 24473000 13664000 10809000 5257900 2391000 2866900 7283600 2867100 4416500 4014700 1941600 2073200 1224 3921 1276 6176;6177;6178;6179;6180;6181;6182;6183;6184;6185 6407;6408;6409;6410;6411;6412;6413;6414;6415 6413 9 AGPPVPASHIAPAPVQPPMIR PSKSPFLHSGMKMQKAGPPVPASHIAPAPV ASHIAPAPVQPPMIRRDITFPPGSVEATQP K A G I R R 4 1 0 0 0 1 0 1 1 2 0 0 1 0 7 1 0 0 0 2 0 0 21 0 2102.1459 O14497;H0Y488;A0A1B0GTU5;H0YEW5 O14497 1616 1636 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 1.2343E-12 82.01 By MS/MS By MS/MS 2 1 0.28446 0.31005 13.127 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27485 0.29961 4.8432 2 0 Median 0.42461 0.37315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97454000 75895000 21559000 0 0 0 0 0 0 96101000 74959000 21142000 1352900 935700 417230 0 0 0 0 0 0 1225 1480 1277;1278 6186;6187;6188 6416;6417;6418;6419;6420 6419 477 5 AGPSAQEPGSQTPLK SPQSSSSGTDLTGDKAGPSAQEPGSQTPLK AGPSAQEPGSQTPLKSMLVISGGEGYIDFR K A G L K S 2 0 0 0 0 2 1 2 0 0 1 1 0 0 3 2 1 0 0 0 0 0 15 0 1466.7365 A0A087X2D8;O60271 A0A087X2D8 1244 1258 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 1.4799E-09 121.68 By MS/MS By MS/MS 1 2 0.69125 0.75461 11.662 3 Plateau 0.67419 0.66913 NaN 1 0 Median 0.77254 0.67566 16.473 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12269000 6937200 5331600 3002800 1716000 1286700 9266000 5221200 4044800 0 0 0 0 0 0 0 0 0 0 0 0 1226 134 1279 6189;6190;6191 6421;6422;6423;6424;6425 6424 5 AGPVAVQVK QAKPTSSPAKGPPQKAGPVAVQVKAEKPMD KGPPQKAGPVAVQVKAEKPMDNSESSEESS K A G V K A 2 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 3 0 0 9 0 867.5178 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 592 600 TCOF1 Treacle protein no no 2 0.0065554 54.205 By matching By MS/MS By MS/MS 2 2 3 1.1104 0.96915 11.549 7 Median NaN NaN NaN 0 0 Median 1.0948 0.97422 15.319 2 0 Median 0.96706 1.0613 17.737 2 0 Median 1.1316 0.96915 6.9696 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19390000 9482800 9907200 0 0 0 2618500 1316000 1302500 11825000 5722900 6102500 4946100 2444000 2502100 0 0 0 0 0 0 1227 2816;891 1280 6192;6193;6194;6195;6196;6197;6198 6426;6427;6428;6429;6430 6426 5 AGQAFRK ______________________________ ______________________________ M A G R K F 2 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 7 1 776.42932 S4R3N1;P61604;B8ZZL8 P61604 2 8 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2 0.0017259 106.76 By MS/MS By MS/MS 1 1 1.3808 1.2848 3.8799 2 Median 1.2748 1.25 NaN 1 0 Median 1.4957 1.3205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34523000 14595000 19928000 19511000 8341300 11170000 15012000 6253500 8758200 0 0 0 0 0 0 0 0 0 0 0 0 1228 2560;4561 1281 6199;6200 6431;6432;6433;6434 6432 4 AGQAVDDFIEK VSKLKKPRRIILLVKAGQAVDDFIEKLVPL LLVKAGQAVDDFIEKLVPLLDTGDIIIDGG K A G E K L 2 0 0 2 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 11 0 1191.5772 P52209;K7EMN2;K7EM49;K7EPF6 P52209 77 87 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.00074479 63.426 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3156 1.1598 29.075 4 Median 1.3113 1.2053 NaN 1 0 Median 1.32 1.1161 NaN 1 0 Median 1.3614 1.3158 NaN 1 1 Median 0.76368 0.68702 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97266000 42363000 54903000 43594000 17573000 26021000 27266000 10511000 16754000 12487000 4956200 7530900 13919000 9322300 4597100 0 0 0 0 0 0 1229 2447 1282 6201;6202;6203;6204 6435;6436;6437;6438;6439 6436 5 AGQEHLLR ______________________________ LKLTLSKAGQEHLLRFWNELEEAQQVELYA K A G L R F 1 1 0 0 0 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 922.49846 Q16222;A0A087X226 Q16222 13 20 UAP1;UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase no no 2 0.028842 40.103 By MS/MS By MS/MS 1 1 1.1494 1.074 26.025 2 Median 1.2896 1.2909 NaN 1 0 Median 1.0244 0.89344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1574100 679030 895030 660340 284610 375730 913720 394420 519300 0 0 0 0 0 0 0 0 0 0 0 0 1230 2981 1283 6205;6206 6440;6441 6440 2 AGQHSQAVADLQAALR TAKWAWLRRGLYYLKAGQHSQAVADLQAAL GQHSQAVADLQAALRADPKDFNCWESLGEA K A G L R A 5 1 0 1 0 3 0 1 1 0 2 0 0 0 0 1 0 0 0 1 0 0 16 0 1634.8489 Q6PGP7;D6RCE2 Q6PGP7 577 592 TTC37 Tetratricopeptide repeat protein 37 yes no 2;3 3.9159E-10 97.767 By MS/MS 3 1.0634 1.0007 9.4941 2 Median 1.0634 1.0007 9.4941 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20457000 9382300 11075000 20457000 9382300 11075000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1231 3169 1284 6207;6208;6209 6442;6443;6444 6444 3 AGQMVTVWAAGAGVAHSPPSTLVWK GEEIAYKFTPKYILRAGQMVTVWAAGAGVA GAGVAHSPPSTLVWKGQSSWGTGESFRTVL R A G W K G 5 0 0 0 0 1 0 3 1 0 1 1 1 0 2 2 2 2 0 4 0 0 25 0 2520.2947 Q03252 Q03252 525 549 LMNB2 Lamin-B2 yes yes 3 0.0012086 26.005 By MS/MS By MS/MS 1 2 0.71552 0.73397 5.7485 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70711 0.73012 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70546 0.69744 7.2193 2 0 Median NaN NaN NaN 0 0 Median 22015000 13117000 8898000 0 0 0 0 0 0 7321300 4357300 2964000 0 0 0 14694000 8759600 5934100 0 0 0 1232 2709 1285 6210;6211;6212 6445;6446;6447;6448;6449;6450 6445 6 AGQPLQLLDASWYLPK LVSAQWVAEALRAPRAGQPLQLLDASWYLP GQPLQLLDASWYLPKLGRDARREFEERHIP R A G P K L 2 0 0 1 0 2 0 1 0 0 4 1 0 0 2 1 0 1 1 0 0 0 16 0 1798.9618 P25325;B1AH49 P25325 25 40 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2 2.0981E-14 125.54 By MS/MS 1 1.0248 0.86124 NaN 1 Median NaN NaN NaN 0 0 Median 1.0248 0.86124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7263800 3425900 3837900 0 0 0 7263800 3425900 3837900 0 0 0 0 0 0 0 0 0 0 0 0 1233 2131 1286 6213 6451 6451 1 AGQQGLSVAFDLATHR STVEESNKFYKDNIKAGQQGLSVAFDLATH GQQGLSVAFDLATHRGYDSDNPRVRGDVGM K A G H R G 3 1 0 1 0 2 0 2 1 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1669.8536 P22033 P22033 129 144 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 3 3.0239E-05 68.919 By MS/MS By matching 1 1 1.3329 1.2405 12.568 2 Median 1.1889 1.1351 NaN 1 0 Median 1.4942 1.3558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6447900 2983900 3464100 5600300 2730300 2870100 847630 253630 594000 0 0 0 0 0 0 0 0 0 0 0 0 1234 2095 1287 6214;6215 6452;6453 6453 2 AGQSAAGAAPGGGVDTR ______________________________ QSAAGAAPGGGVDTRDAEMPATEKDLAEDA R A G T R D 5 1 0 1 0 1 0 5 0 0 0 0 0 0 1 1 1 0 0 1 0 0 17 0 1441.691 P21333 P21333 8 24 FLNA Filamin-A yes yes 2 6.3533E-09 93.959 By MS/MS By MS/MS By matching 2 3 1 0.84136 0.7623 17.255 5 Median 0.92144 0.91598 12.653 2 0 Median 0.84176 0.72937 6.2447 2 0 Median NaN NaN NaN 0 0 Median 0.7391 0.64095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5159500 2708000 2451400 1212100 581430 630650 3699300 1998100 1701200 0 0 0 248110 128530 119590 0 0 0 0 0 0 1235 2088 1288 6216;6217;6218;6219;6220;6221 6454;6455;6456;6457;6458 6458 5 AGQSVIGLQMGTNK YAEKQTRRFDEGKLKAGQSVIGLQMGTNKC KAGQSVIGLQMGTNKCASQAGMTAYGTRRH K A G N K C 1 0 1 0 0 2 0 3 0 1 1 1 1 0 0 1 1 0 0 1 0 0 14 0 1402.7238 Q15417;E9PDU6 Q15417 159 172 CNN3 Calponin-3;Calponin yes no 2 4.483E-11 174.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1408 1.0353 25.429 6 Median 0.77746 0.76638 41.794 2 0 Median 1.2801 1.0926 6.8721 2 1 Median 1.1319 1.0634 NaN 1 0 Median 1.1498 0.95214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44794000 22554000 22240000 27917000 14865000 13052000 6311400 2741900 3569500 8064800 3785100 4279700 2500300 1161900 1338400 0 0 0 0 0 0 1236 2950 1289 6222;6223;6224;6225;6226;6227 6459;6460;6461;6462;6463;6464;6465;6466;6467 6460 9 AGQVFLEELGNHK FGWFLTKKSSETLRKAGQVFLEELGNHKAF RKAGQVFLEELGNHKAFKKELRQFVPGDEP K A G H K A 1 0 1 0 0 1 2 2 1 0 2 1 0 1 0 0 0 0 0 1 0 0 13 0 1440.7361 P09543 P09543 205 217 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 3 9.2768E-05 76.326 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.1363 0.98076 24.345 5 Median 1.325 1.2308 NaN 1 0 Median 1.1363 0.96843 NaN 1 0 Median 0.78575 0.79391 29.891 2 1 Median 1.2871 1.0793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36273000 19470000 16803000 10549000 6038800 4509800 10923000 4656400 6266900 14343000 8516800 5826500 458330 258140 200190 0 0 0 0 0 0 1237 1918 1290 6228;6229;6230;6231;6232 6468;6469 6468 2 AGQVVTIWAAGAGATHSPPTDLVWK DPLLTYRFPPKFTLKAGQVVTIWAAGAGAT GAGATHSPPTDLVWKAQNTWGCGNSLRTAL K A G W K A 5 0 0 1 0 1 0 3 1 1 1 1 0 0 2 1 3 2 0 3 0 0 25 0 2532.3125 P02545;A0A0C4DGC5 P02545 491 515 LMNA Prelamin-A/C;Lamin-A/C no no 3 7.0359E-13 57.432 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 0.84659 0.80493 7.832 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82386 0.81572 3.1887 2 0 Median 1.0748 0.91678 NaN 1 0 Median 0.75812 0.74736 1.5219 2 0 Median 1.0216 0.84345 6.6112 2 0 Median 90630000 47912000 42718000 0 0 0 0 0 0 36177000 19227000 16950000 2090300 1009400 1081000 46171000 25238000 20933000 6192300 2438000 3754300 1238 1834 1291 6233;6234;6235;6236;6237;6238;6239 6470;6471;6472;6473;6474;6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492 6485 23 AGQWLWAQR RHVLSCLGGGLALWRAGQWLWAQRLGHCHT GLALWRAGQWLWAQRLGHCHTYWAVSEELL R A G Q R L 2 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 2 0 0 0 0 9 0 1114.5672 M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653 M0QYT9 131 139 IRF3 Interferon regulatory factor 3 yes no 2 0.0021515 73.975 By matching By MS/MS By MS/MS 1 1 1 0.96618 0.84451 3.1291 3 Median NaN NaN NaN 0 0 Median 0.99828 0.89027 NaN 1 0 Median 0.84126 0.84451 NaN 1 0 Median 0.96618 0.84218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4989700 2564800 2424900 0 0 0 163510 73862 89643 3725400 1926100 1799300 1100800 564910 535940 0 0 0 0 0 0 1239 1420 1292 6240;6241;6242 6493;6494;6495 6494 3 AGRVDLVDESGYVSGYK SHKERFDPSGKGKGKAGRVDLVDESGYVSG RVDLVDESGYVSGYKHAGTYDQKVQGGK__ K A G Y K H 1 1 0 2 0 0 1 3 0 0 1 1 0 0 0 2 0 0 2 3 0 0 17 1 1813.8846 O94811 O94811 190 206 TPPP Tubulin polymerization-promoting protein yes yes 3 0.034723 14.472 By MS/MS 1 1.3734 1.2158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3734 1.2158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1096400 472720 623700 0 0 0 0 0 0 0 0 0 1096400 472720 623700 0 0 0 0 0 0 1240 1726 1293 6243 6496 6496 1 AGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNK PVPENLVPESQKDRKAGSALPGFANSPAGS LVPPAHGTLVPDGNKANHSSHQEDTYGALD K A G N K A 5 0 2 1 0 0 0 5 1 0 3 1 0 1 5 4 2 0 0 4 0 0 34 0 3184.6517 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 947 980 SEC16A Protein transport protein Sec16A yes no 3 0.069572 4.617 By MS/MS 1 0.44734 0.4311 NaN 1 Median 0.44734 0.4311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3479500 2328600 1151000 3479500 2328600 1151000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1241 1513 1294 6244 6497 6497 1 AGSDGESIGNCPFSQR LKEEDKEPLIELFVKAGSDGESIGNCPFSQ GSDGESIGNCPFSQRLFMILWLKGVVFSVT K A G Q R L 1 1 1 1 1 1 1 3 0 1 0 0 0 1 1 3 0 0 0 0 0 0 16 0 1680.7162 Q9Y696 Q9Y696 25 40 CLIC4 Chloride intracellular channel protein 4 yes yes 2 8.2053E-05 75.045 By MS/MS 1 1.1294 0.95485 NaN 1 Median NaN NaN NaN 0 0 Median 1.1294 0.95485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4198300 1960200 2238100 0 0 0 4198300 1960200 2238100 0 0 0 0 0 0 0 0 0 0 0 0 1242 4483 1295 6245 6498;6499 6499 2 AGSISSEEVDGSQGNMMR VESDGAVTSAGTEIRAGSISSEEVDGSQGN ISSEEVDGSQGNMMRMGPKKETEGTVTCTG R A G M R M 1 1 1 1 0 1 2 3 0 1 0 0 2 0 0 4 0 0 0 1 0 0 18 0 1853.7884 Q8NFC6 Q8NFC6 1699 1716 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 3.1831E-14 113.65 By MS/MS By MS/MS 1 1 1.0046 0.96238 5.4964 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94885 1.0005 NaN 1 0 Median 1.0636 0.9257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13386000 6474600 6911700 0 0 0 0 0 0 11977000 5738700 6238000 1409600 735880 673680 0 0 0 0 0 0 1243 3434 1296 6246;6247 6500;6501;6502;6503 6500 4 AGSLAHTSLGAGGFPAALPAGPAGELHAK LHKPPRPQPPEVAFKAGSLAHTSLGAGGFP PAALPAGPAGELHAKVPSGQPPNFVRSPGT K A G A K V 8 0 0 0 0 0 1 6 2 0 4 1 0 1 3 2 1 0 0 0 0 0 29 0 2625.3663 O14686 O14686 2481 2509 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3;4 0.0021231 25.275 By MS/MS 2 0.56069 0.6029 2.845 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56069 0.6029 2.845 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20297000 13586000 6710500 0 0 0 0 0 0 20297000 13586000 6710500 0 0 0 0 0 0 0 0 0 1244 1490 1297 6248;6249 6504;6505;6506 6504 3 AGSLGINLVAANR DETNVRGRLFIISTKAGSLGINLVAANRVI TKAGSLGINLVAANRVIIFDASWNPSYDIQ K A G N R V 3 1 2 0 0 0 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 P46100 P46100 2119 2131 ATRX Transcriptional regulator ATRX yes yes 2 0.025504 28.013 By matching By MS/MS 1 2 0.66537 0.70866 79.949 3 Plateau NaN NaN NaN 0 0 Median 0.17595 0.15677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45132 0.46784 69.384 2 0 Median NaN NaN NaN 0 0 Median 10814000 6857400 3956400 0 0 0 1324600 1175800 148840 0 0 0 0 0 0 9489200 5681600 3807600 0 0 0 1245 2339 1298 6250;6251;6252 6507 6507 1 AGSLLWMVATSPGR DQQSSSSRLRSAVSRAGSLLWMVATSPGRL RAGSLLWMVATSPGRLFRLLYWWAGTTWYR R A G G R L 2 1 0 0 0 0 0 2 0 0 2 0 1 0 1 2 1 1 0 1 0 0 14 0 1444.7497 Q9UH99;B0QY64;H0Y686;B0QY63 Q9UH99 162 175 SUN2 SUN domain-containing protein 2 yes no 2 0.0006625 64.439 By MS/MS 1 0.95836 1.0117 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95836 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579000 820890 758080 0 0 0 0 0 0 1579000 820890 758080 0 0 0 0 0 0 0 0 0 1246 4271 1299 6253 6508;6509 6508 2 AGSPTLLNCLMYK ESDYFTPQGEFRVDKAGSPTLLNCLMYKMS DKAGSPTLLNCLMYKMSYYRFGEMQLDFRT K A G Y K M 1 0 1 0 1 0 0 1 0 0 3 1 1 0 1 1 1 0 1 0 0 0 13 0 1466.7262 Q8TCJ2 Q8TCJ2 707 719 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 0.00033825 76.465 By MS/MS By MS/MS 2 1 1.1793 1.1689 22.874 3 Plateau NaN NaN NaN 0 0 Median 1.1355 0.99776 32.103 2 0 Median 0.97085 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10055000 4281500 5773700 0 0 0 5858900 2151600 3707300 4196300 2129900 2066400 0 0 0 0 0 0 0 0 0 1247 3466 1300 6254;6255;6256 6510;6511 6510 2 AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAK QYKSHFVAASLSNQKAGSSAAGASGWTSAG QGHNSPDSPVTSAAKGIPGFGNTGNISGAP K A G A K G 8 0 3 1 0 2 0 5 1 0 1 1 0 0 3 10 3 1 0 2 0 0 41 0 3811.7634 Q86XP3;A0A0A0MSJ0 Q86XP3 721 761 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 3.6518E-10 42.262 By MS/MS By MS/MS 2 1 0.63042 0.53887 29.329 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58472 0.63721 39.155 2 0 Median 0.63042 0.53887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15636000 10151000 5485300 0 0 0 0 0 0 13014000 8591700 4421900 2622300 1558900 1063400 0 0 0 0 0 0 1248 3302 1301 6257;6258;6259 6512;6513 6513 2 AGSSESIAAFIQR VQGVLSSLLGSLGARAGSSESIAAFIQRLS ARAGSSESIAAFIQRLSGSSNIFEPGADGA R A G Q R L 3 1 0 0 0 1 1 1 0 2 0 0 0 1 0 3 0 0 0 0 0 0 13 0 1335.6783 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47 P46379 720 732 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 8.722E-07 112.75 By MS/MS By matching By matching By matching 1 1 1 1 1.1799 1.0539 22.572 4 Median 1.1934 1.1501 NaN 1 0 Median 1.1665 0.98678 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87018 0.70539 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3702 1.1257 NaN 1 0 Median 15074000 6768200 8305700 9918900 4478100 5440800 4384700 1979500 2405200 0 0 0 85969 46789 39180 0 0 0 684320 263800 420520 1249 8 1302 6260;6261;6262;6263 6514;6515 6514 2 AGSSTPGDAPPAVAEVQGR AVGDTSAAGSSEQPRAGSSTPGDAPPAVAE TPGDAPPAVAEVQGRSDGSGESAQPPEDSS R A G G R S 4 1 0 1 0 1 1 3 0 0 0 0 0 0 3 2 1 0 0 2 0 0 19 0 1765.8595 Q7Z6Z7 Q7Z6Z7 2885 2903 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 1.5212E-18 122.64 By MS/MS By MS/MS 3 3 0.78233 0.69729 40.067 6 Median 0.54902 0.52453 16.263 3 0 Median 0.89957 0.76703 43.322 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79108000 41882000 37226000 34101000 21101000 13000000 45007000 20781000 24227000 0 0 0 0 0 0 0 0 0 0 0 0 1250 3253 1303 6264;6265;6266;6267;6268;6269 6516;6517;6518;6519;6520;6521;6522;6523;6524;6525 6522 10 AGTEDEEEEEEGRR MAATFFGEVVKAPCRAGTEDEEEEEEGRRE RAGTEDEEEEEEGRRETPEDREVRLQLARK R A G R R E 1 2 0 1 0 0 7 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 14 1 1634.6656 O95456;F8WBH7 O95456 16 29 PSMG1 Proteasome assembly chaperone 1 yes no 3 0.0020447 35.204 By MS/MS 2 1.1046 0.97665 18.696 2 Median NaN NaN NaN 0 0 Median 1.1046 0.97665 18.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1274700 592600 682060 0 0 0 1274700 592600 682060 0 0 0 0 0 0 0 0 0 0 0 0 1251 1774 1304 6270;6271 6526;6527 6526 2 AGTEPSDAIR IDEVESLTAARNACRAGTEPSDAIRVVNAV RNACRAGTEPSDAIRVVNAVLTQIDQIKRH R A G I R V 2 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 10 0 1015.4934 Q15645 Q15645 266 275 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.065949 41.029 By MS/MS 1 1.0453 0.8998 NaN 1 Median NaN NaN NaN 0 0 Median 1.0453 0.8998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2285000 1087000 1198000 0 0 0 2285000 1087000 1198000 0 0 0 0 0 0 0 0 0 0 0 0 1252 2960 1305 6272 6528 6528 1 AGTGENAPWVVEDELVK NKEIVRYFIRHNALRAGTGENAPWVVEDEL TGENAPWVVEDELVKKYSLPSKFSDFLLDP R A G V K K 2 0 1 1 0 0 3 2 0 0 1 1 0 0 1 0 1 1 0 3 0 0 17 0 1812.8894 Q9UIG0 Q9UIG0 264 280 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 2.2465E-05 61.11 By MS/MS By matching 1 1 0.78751 0.74018 10.217 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76024 0.79563 NaN 1 0 Median 0.81576 0.68859 NaN 1 0 Median 9237100 4857100 4380000 0 0 0 0 0 0 0 0 0 0 0 0 8990700 4730100 4260600 246320 126930 119390 1253 4290 1306 6273;6274 6529 6529 1 AGTGENAPWVVEDELVKK NKEIVRYFIRHNALRAGTGENAPWVVEDEL GENAPWVVEDELVKKYSLPSKFSDFLLDPY R A G K K Y 2 0 1 1 0 0 3 2 0 0 1 2 0 0 1 0 1 1 0 3 0 0 18 1 1940.9844 Q9UIG0 Q9UIG0 264 281 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0005946 32.981 By MS/MS 1 0.6436 0.69765 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6436 0.69765 NaN 1 0 Median NaN NaN NaN 0 0 Median 18264000 11334000 6929900 0 0 0 0 0 0 0 0 0 0 0 0 18264000 11334000 6929900 0 0 0 1254 4290 1307 6275 6530;6531 6530 2 AGTGVDNVDLEAATR ADVINAAEKLQVVGRAGTGVDNVDLEAATR AGTGVDNVDLEAATRKGILVMNTPNGNSLS R A G T R K 3 1 1 2 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1487.7216 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2 A0A286YF22 76 90 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 4.3445E-08 151.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1.4201 1.1918 35.668 9 Median 1.0729 1.0153 4.6695 2 0 Median 1.4647 1.2245 18.369 4 1 Median NaN NaN NaN 0 0 Median 1.4045 1.2039 NaN 1 0 Median 3.061 3.0517 NaN 1 0 Median 1.4912 1.1702 NaN 1 0 Median 134580000 57727000 76849000 86344000 39897000 46447000 30535000 12270000 18265000 0 0 0 4579300 2019400 2560000 12525000 3280200 9244600 592960 259850 333100 1255 351 1308 6276;6277;6278;6279;6280;6281;6282;6283;6284;6285 6532;6533;6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544 6533 13 AGTGVDNVDLEAATRK ADVINAAEKLQVVGRAGTGVDNVDLEAATR GTGVDNVDLEAATRKGILVMNTPNGNSLSA R A G R K G 3 1 1 2 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 16 1 1615.8166 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2 A0A286YF22 76 91 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2;3 3.2833E-05 59.261 By MS/MS By matching By matching 2 1 1 0.89585 0.92962 7.51 4 Median 0.89585 0.89467 6.2449 2 0 Median 1.125 1.0281 NaN 1 0 Median 0.81857 0.9242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20000000 8625100 11374000 14152000 5533600 8618100 1918200 869540 1048700 3929700 2222000 1707700 0 0 0 0 0 0 0 0 0 1256 351 1309 6286;6287;6288;6289 6545;6546 6545 2 AGTLLPVIQFLQK THKLLMLHGQKLKSRAGTLLPVIQFLQKSI SRAGTLLPVIQFLQKSIQRHLDDLSKLCSW R A G Q K S 1 0 0 0 0 2 0 1 0 1 3 1 0 1 1 0 1 0 0 1 0 0 13 0 1426.8548 A0A096LPI6;Q15269;A0A0B4J2E5 Q15269 838 850 PWP2 Periodic tryptophan protein 2 homolog no no 2 0.0012695 56.563 By matching By matching By MS/MS By matching By MS/MS 1 3 3 1 1 1.3446 1.2131 23.663 9 Median 2.3152 2.2599 NaN 1 0 Median 1.4256 1.2444 13.996 3 0 Median 1.0784 1.1759 2.1991 3 0 Median 1.5134 1.3693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3446 1.0683 NaN 1 0 Median 10277000 4755900 5521200 129120 36718 92401 3019000 1345300 1673700 6526700 3116100 3410600 121000 45946 75054 0 0 0 481180 211750 269440 1257 144;223 1310 6290;6291;6292;6293;6294;6295;6296;6297;6298 6547;6548;6549;6550 6548 4 AGTLSITEFADMLSGNAGGFR IAKNLIDRSALDQYRAGTLSITEFADMLSG TEFADMLSGNAGGFRSRSSSVGSSSSYPIS R A G F R S 3 1 1 1 0 0 1 4 0 1 2 0 1 2 0 2 2 0 0 0 0 0 21 0 2114.0103 Q15149;H0YDN1 Q15149 4361 4381 PLEC Plectin yes no 2 0.018161 33.204 By MS/MS 1 1.2087 1.2854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2087 1.2854 NaN 1 1 Median NaN NaN NaN 0 0 Median 863750 365800 497950 0 0 0 0 0 0 0 0 0 0 0 0 863750 365800 497950 0 0 0 1258 2933 1311 6299 6551 6551 1 AGTLTVEELGATLTSLLAQAQAQAR EVSEDRRQDLLSRYRAGTLTVEELGATLTS ATLTSLLAQAQAQARAEAEAGSPRPDPREA R A G A R A 6 1 0 0 0 3 2 2 0 0 5 0 0 0 0 1 4 0 0 1 0 0 25 0 2512.3497 P58107;A0A075B730 P58107 2477 2501 EPPK1 Epiplakin yes no 3 3.4415E-06 38.267 By matching By MS/MS By matching 2 2 1 1.338 1.2057 9.7495 5 Median 1.1574 1.1352 8.5277 2 0 Median 1.3708 1.1871 4.3856 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.338 1.3941 NaN 1 0 Median NaN NaN NaN 0 0 Median 2597200 1061500 1535700 308330 152670 155660 2097000 836070 1260900 0 0 0 0 0 0 191880 72755 119120 0 0 0 1259 2520 1312 6300;6301;6302;6303;6304 6552 6552 1 AGTNMMMVGVHGPK AFVGQKNSFTVDCSKAGTNMMMVGVHGPKT KAGTNMMMVGVHGPKTPCEEVYVKHMGNRV K A G P K T 1 0 1 0 0 0 0 3 1 0 0 1 3 0 1 0 1 0 0 2 0 0 14 0 1428.6676 Q14315 Q14315 2663 2676 FLNC Filamin-C yes yes 2;3 7.6041E-08 100.58 By MS/MS By MS/MS 3 4 1.0556 1.0301 35.091 7 Median 1.07 1.0565 16.155 3 0 Median 0.86306 0.76854 33.69 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63257000 31506000 31752000 21454000 8863800 12590000 41804000 22642000 19162000 0 0 0 0 0 0 0 0 0 0 0 0 1260 2871 1313 6305;6306;6307;6308;6309;6310;6311 6553;6554;6555;6556;6557 6557 5 AGTQIENIDEDFRDGLK QRKTFTAWCNSHLRKAGTQIENIDEDFRDG TQIENIDEDFRDGLKLMLLLEVISGERLPK K A G L K L 1 1 1 3 0 1 2 2 0 2 1 1 0 1 0 0 1 0 0 0 0 0 17 1 1919.9225 O43707;F5GXS2;K7EP19 O43707 67 83 ACTN4 Alpha-actinin-4 yes no 2;3 0.00011395 59.57 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.026 1.0264 12.291 6 Median 1.0542 1.0992 4.9266 2 0 Median 0.97468 0.96149 22.978 2 0 Median 0.86312 0.97967 NaN 1 0 Median 1.0328 0.99251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51716000 24687000 27029000 44152000 20681000 23471000 1805300 874610 930720 5463300 2963400 2499900 295960 167730 128230 0 0 0 0 0 0 1261 1585 1314 6312;6313;6314;6315;6316;6317 6558;6559;6560;6561;6562;6563 6561 6 AGTQIENIEEDFRDGLK QRKTFTAWCNSHLRKAGTQIENIEEDFRDG TQIENIEEDFRDGLKLMLLLEVISGERLAK K A G L K L 1 1 1 2 0 1 3 2 0 2 1 1 0 1 0 0 1 0 0 0 0 0 17 1 1933.9381 P12814;G3V2N5;G3V5M4;G3V380 P12814 48 64 ACTN1 Alpha-actinin-1 yes no 3 0.067514 9.4055 By MS/MS By matching 1 1 1.3146 1.3398 7.3182 2 Median 1.2221 1.2723 NaN 1 0 Median 1.4141 1.411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9750800 4315100 5435700 6470300 2797600 3672700 3280500 1517500 1763000 0 0 0 0 0 0 0 0 0 0 0 0 1262 1983 1315 6318;6319 6564 6564 1 AGTVMFEYGMR ELLYAFHIYRHNYRKAGTVMFEYGMRLGRE NYRKAGTVMFEYGMRLGREVRTLRGLEKQG K A G M R L 1 1 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 1 1 0 0 11 0 1260.5631 Q12769;G3V198;E9PR16 Q12769 1097 1107 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.00018718 99.802 By matching By MS/MS By matching 1 2 1 1.5304 1.5082 21.514 4 Median NaN NaN NaN 0 0 Median 1.7868 1.5786 NaN 1 0 Median 1.1932 1.3244 11.934 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4008 2.038 NaN 1 0 Median 19272000 9369400 9902600 0 0 0 842510 351230 491270 18309000 8986600 9322300 0 0 0 0 0 0 120620 31601 89017 1263 2756 1316 6320;6321;6322;6323 6565;6566 6565 2 AGTVVLDDVELR ______________________________ ______________________________ M A G L R E 1 1 0 2 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 3 0 0 12 0 1285.6878 P25205 P25205 2 13 MCM3 DNA replication licensing factor MCM3 yes yes 2 3.7868E-06 150.35 By MS/MS By MS/MS By MS/MS By matching 4 4 6 1 0.94028 0.93298 14.72 15 Median 0.93579 0.90784 2.1507 4 0 Median 1.2868 1.1106 6.1591 4 0 Median 0.8518 0.84671 15.398 6 1 Median 1.255 1.0614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152830000 72146000 80684000 34650000 17473000 17177000 87732000 38976000 48756000 30077000 15525000 14552000 372660 172070 200590 0 0 0 0 0 0 1264 2129 1317 6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338 6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577;6578;6579;6580 6568 14 AGTYFSNQAVR FFTGVVDFMHLDPKKAGTYFSNQAVRACIL DPKKAGTYFSNQAVRACILCVHPRTRVVHL K A G V R A 2 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 11 0 1212.5887 Q14690;A0A3B3IUD7 Q14690 318 328 PDCD11 Protein RRP5 homolog yes no 2 0.0002087 74.376 By MS/MS 1 0.89703 0.98046 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89703 0.98046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9705800 4592900 5112900 0 0 0 0 0 0 9705800 4592900 5112900 0 0 0 0 0 0 0 0 0 1265 448 1318 6339 6581 6581 1 AGVAPLQVK VRANLPQSFQVDTSKAGVAPLQVKVQGPKG QVDTSKAGVAPLQVKVQGPKGLVEPVDVVD K A G V K V 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 9 0 881.53345 P21333;Q60FE5;A0A087WWY3 P21333 1478 1486 FLNA Filamin-A no no 2 0.0015338 80.462 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 2 1 3 1 1 0.91667 0.85843 15.983 11 Median 0.94477 0.94531 6.9383 3 0 Median 0.82148 0.73183 5.7666 2 0 Median 0.9206 1.0255 NaN 1 0 Median 0.87803 0.81697 17.813 3 0 Median 1.0552 1.1154 NaN 1 0 Median 0.88239 0.75609 NaN 1 0 Median 103250000 52883000 50364000 18165000 8911300 9253600 73004000 37836000 35168000 4742100 2450800 2291300 2457800 1208300 1249500 2374900 1056300 1318700 2503600 1421000 1082600 1266 2088;3120 1319 6340;6341;6342;6343;6344;6345;6346;6347;6348;6349;6350 6582;6583;6584;6585;6586;6587;6588;6589;6590;6591 6587 10 AGVDPLVPLR CVERINEMVNRAKRKAGVDPLVPLRSLGLS RAKRKAGVDPLVPLRSLGLSLSGGDQEDAG K A G L R S 1 1 0 1 0 0 0 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 10 0 1035.6077 H7C3G9;Q9UJ70;C9JEV6;H7C1L7;H0YE82;H0YEB7 H7C3G9 60 69 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.038354 49.442 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1267 1265 1320 6351 6592 6592 1 AGVENGKPTHFTVYTK HDASKVKAEGPGLSKAGVENGKPTHFTVYT GVENGKPTHFTVYTKGAGKAPLNVQFNSPL K A G T K G 1 0 1 0 0 0 1 2 1 0 0 2 0 1 1 0 3 0 1 2 0 0 16 1 1747.8893 O75369;E7EN95 O75369 858 873 FLNB Filamin-B yes no 3;4 2.8379E-06 85.469 By MS/MS By MS/MS By matching By matching By matching 2 2 1 4 1 0.99239 1.0946 33.332 10 Median 1.1026 1.1954 2.3107 2 1 Median 0.92951 0.88852 1.5895 2 0 Median 0.93493 1.0736 NaN 1 0 Median 0.98359 1.0228 51.392 4 0 Median 1.2839 1.4687 NaN 1 0 Median NaN NaN NaN 0 0 Median 53710000 26768000 26942000 7095800 4034300 3061500 36293000 17687000 18606000 2421200 1406600 1014600 3004900 1412500 1592400 4894800 2227300 2667500 0 0 0 1268 1664 1321 6352;6353;6354;6355;6356;6357;6358;6359;6360;6361 6593;6594;6595;6596;6597 6597 5 AGVGEPPEPGGRPEPGPR ______________________________ GEPPEPGGRPEPGPRGFVPQKEIVYNKLLP R A G P R G 1 2 0 0 0 0 3 5 0 0 0 0 0 0 6 0 0 0 0 1 0 0 18 1 1754.87 Q14997;F8WBH5 Q14997 7 24 PSME4 Proteasome activator complex subunit 4 yes no 3 8.784E-05 41.86 By MS/MS By MS/MS 1 1 0.38835 0.40357 3.4081 2 Median 0.36839 0.39396 NaN 1 0 Median 0.40939 0.41341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7585400 5555900 2029500 2696500 1857600 838840 4889000 3698300 1190700 0 0 0 0 0 0 0 0 0 0 0 0 1269 2906 1322 6362;6363 6598;6599;6600 6600 3 AGVIFPVGR RGGKKKSTKTSRSAKAGVIFPVGRMLRYIK TSRSAKAGVIFPVGRMLRYIKKGHPKYRIG K A G G R M 1 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 914.53379 O75367;B4DJC3;D6RCF2;Q9P0M6;Q5SQT3 O75367 19 27 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A;Core histone macro-H2A.2 no no 2 0.00091848 90.661 By MS/MS By MS/MS 7 4 0.89675 0.87926 10.528 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85925 0.86621 3.987 7 0 Median 1.3171 1.0538 4.6788 4 0 Median 973910000 495420000 478490000 0 0 0 0 0 0 0 0 0 0 0 0 807200000 423550000 383650000 166710000 71869000 94844000 1270 1662;4206 1323 6364;6365;6366;6367;6368;6369;6370;6371;6372;6373;6374 6601;6602;6603;6604;6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617 6609 17 AGVLAGHDNR DDFNCNVWDALKADRAGVLAGHDNRVSCLG LKADRAGVLAGHDNRVSCLGVTDDGMAVAT R A G N R V 2 1 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1008.5101 E7EP32;P62879;P62873;B3KVK2 P62873 305 314 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.013194 40.352 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1.2429 1.1303 11.072 6 Median 0.98037 0.95132 NaN 1 0 Median 1.2816 1.0978 NaN 1 0 Median 1.2008 1.1783 NaN 1 0 Median 1.2879 1.0854 NaN 1 0 Median 1.2429 1.2441 9.4562 2 0 Median NaN NaN NaN 0 0 Median 2968200 1364900 1603300 1210800 577640 633170 584150 265460 318690 252130 119610 132520 219920 100860 119060 701150 301270 399880 0 0 0 1271 2603;867 1324 6375;6376;6377;6378;6379;6380 6618;6619;6620;6621;6622;6623 6619 6 AGVLAHLEEER DSNLYRIGQSKVFFRAGVLAHLEEERDLKI VFFRAGVLAHLEEERDLKITDVIIGFQACC R A G E R D 2 1 0 0 0 0 3 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1222.6306 P35579;P35580 P35579 765 775 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 2.0334E-07 168.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 2 2 4 1.1608 1.0139 19.301 19 Median 1.1478 1.121 2.6988 3 0 Median 1.1976 1.0445 24.617 6 0 Median 0.69234 0.75464 12.331 2 0 Median 1.1707 1.0297 13.32 2 0 Median 0.912 0.95019 4.4326 2 0 Median 1.2751 1.0522 15.14 4 1 Median 617770000 286880000 330890000 205040000 87830000 117210000 336040000 158210000 177840000 47260000 27557000 19702000 7522000 3311600 4210300 17232000 7909800 9322200 4669000 2066500 2602500 1272 2244;2245 1325 6381;6382;6383;6384;6385;6386;6387;6388;6389;6390;6391;6392;6393;6394;6395;6396;6397;6398;6399;6400 6624;6625;6626;6627;6628;6629;6630;6631;6632;6633;6634;6635;6636;6637;6638;6639;6640;6641;6642;6643;6644;6645 6635 22 AGVLAHLEEERDLK DSNLYRIGQSKVFFRAGVLAHLEEERDLKI RAGVLAHLEEERDLKITDVIIGFQACCRGY R A G L K I 2 1 0 1 0 0 3 1 1 0 3 1 0 0 0 0 0 0 0 1 0 0 14 1 1578.8366 P35579;P35580 P35579 765 778 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3;4 2.8452E-08 98.942 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 1.1195 1.0618 14.048 5 Median 1.2101 1.2034 2.5036 2 0 Median 1.1195 1.0544 NaN 1 0 Median 0.88608 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97931 0.8547 NaN 1 0 Median 195920000 85186000 110740000 169050000 71579000 97475000 7506700 3443000 4063700 17972000 9361400 8610100 0 0 0 0 0 0 1390700 803180 587560 1273 2244;2245 1326 6401;6402;6403;6404;6405;6406 6646;6647;6648;6649;6650;6651;6652;6653;6654 6646 9 AGVLAQLEEERDLK DPNLYRVGQSKIFFRAGVLAQLEEERDLKV RAGVLAQLEEERDLKVTDIIVSFQAAARGY R A G L K V 2 1 0 1 0 1 3 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 14 1 1569.8362 Q7Z406 Q7Z406 789 802 MYH14 Myosin-14 no no 3 0.035482 18.596 By MS/MS 1 1.1443 1.1559 NaN 1 Median 1.1443 1.1559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4452500 2137000 2315500 4452500 2137000 2315500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1274 3242 1327 6407 6655 6655 1 AGVLGGPATPASGPGPASAEPAVTEPGLGPDPK YELQMLRHRHEALARAGVLGGPATPASGPG AEPAVTEPGLGPDPKDTIIDVVGAPLTPNS R A G P K D 6 0 0 1 0 0 2 7 0 0 2 1 0 0 8 2 2 0 0 2 0 0 33 0 2921.4771 Q9NPF5 Q9NPF5 401 433 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 3 1.9286E-05 29.64 By MS/MS 1 0.20669 0.20564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20669 0.20564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6249700 4810100 1439600 0 0 0 0 0 0 6249700 4810100 1439600 0 0 0 0 0 0 0 0 0 1275 4050 1328 6408 6656 6656 1 AGVMALANLLQIQR AEPLINLDVNNPDFKAGVMALANLLQIQRH KAGVMALANLLQIQRHDDYLVMLKAIRILV K A G Q R H 3 1 1 0 0 2 0 1 0 1 3 0 1 0 0 0 0 0 0 1 0 0 14 0 1496.8497 Q9Y224;H0YJB9;G3V4C6 Q9Y224 132 145 C14orf166 UPF0568 protein C14orf166 yes no 2;3 1.2567E-15 129.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1 3 1.2061 1.0475 7.1784 14 Median 1.0364 0.98504 3.7127 3 0 Median 1.2373 1.0574 5.4256 3 0 Median 1.1108 1.0475 0.78767 2 0 Median 1.2954 1.0693 0.66707 2 0 Median 1.2869 1.2691 NaN 1 0 Median 1.2362 0.99992 7.081 3 0 Median 61311000 27400000 33910000 44769000 20028000 24741000 2526200 1123000 1403200 4231100 1977600 2253500 2093500 868530 1225000 2710200 1175100 1535100 4981000 2228100 2752900 1276 4367 1329;1330 6409;6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422;6423 6657;6658;6659;6660;6661;6662;6663;6664;6665;6666;6667;6668;6669;6670;6671;6672;6673 6662 1945 17 AGVNTVTTLVENK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA LRAGVNTVTTLVENKKAQLVVIAHDVDPIE R A G N K K 1 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 3 0 0 13 0 1344.7249 P62424;Q5T8U2;Q5T8U3 P62424 138 150 RPL7A 60S ribosomal protein L7a yes no 2 2.6725E-06 121.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 2 1.3626 1.2287 41.084 11 Median 1.2489 1.144 14.785 2 0 Median 1.2987 1.0884 17.155 2 0 Median 1.8225 1.7586 NaN 1 0 Median 1.337 1.1191 NaN 1 0 Median 2.4621 2.5782 26.25 3 2 Median 1.283 1.0504 2.0911 2 0 Median 1089300000 430720000 658620000 529210000 245190000 284010000 109230000 47948000 61281000 54622000 19904000 34718000 14116000 5747500 8368500 361000000 103240000 257760000 21166000 8691300 12475000 1277 2589 1331 6424;6425;6426;6427;6428;6429;6430;6431;6432;6433;6434 6674;6675;6676;6677;6678;6679;6680;6681;6682;6683;6684;6685;6686;6687;6688;6689;6690;6691;6692 6675 19 AGVNTVTTLVENKK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA RAGVNTVTTLVENKKAQLVVIAHDVDPIEL R A G K K A 1 0 2 0 0 0 1 1 0 0 1 2 0 0 0 0 3 0 0 3 0 0 14 1 1472.8199 P62424;Q5T8U2;Q5T8U3 P62424 138 151 RPL7A 60S ribosomal protein L7a yes no 2;3 1.4929E-08 150.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 7 5 1.1252 1.0474 14.584 22 Median 1.0802 1.0349 11.652 4 0 Linear 1.1587 1.0411 7.4647 3 0 Plateau 1.1484 1.1988 0.66057 2 0 Median 1.2897 1.1324 14.098 3 0 Median 1.083 1.1696 18.461 6 1 Median 1.2091 1.0227 7.9789 4 0 Median 1044100000 487730000 556370000 545000000 256450000 288540000 179070000 80185000 98890000 32761000 15170000 17591000 25266000 10791000 14475000 212720000 103330000 109390000 49287000 21805000 27483000 1278 2589 1332 6435;6436;6437;6438;6439;6440;6441;6442;6443;6444;6445;6446;6447;6448;6449;6450;6451;6452;6453;6454;6455;6456;6457;6458 6693;6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725;6726;6727;6728 6697 36 AGVQEFVDGLHEK KMKRLSEFIYSKTSKAGVQEFVDGLHEKLN SKAGVQEFVDGLHEKLNTIIIKASAKGGNL K A G E K L 1 0 0 1 0 1 2 2 1 0 1 1 0 1 0 0 0 0 0 2 0 0 13 0 1427.7045 Q9UK61;A0A087X0F1 Q9UK61 1072 1084 FAM208A Protein FAM208A yes no 3 0.010841 25.978 By matching By matching By MS/MS 1 1 2 0.98159 0.97026 25.032 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1644 1.2978 NaN 1 0 Median 0.87222 0.7896 NaN 1 0 Median 0.93264 0.97026 25.042 2 0 Median NaN NaN NaN 0 0 Median 10124000 4907900 5216200 0 0 0 0 0 0 2670400 1134400 1535900 106090 47931 58159 7347600 3725500 3622100 0 0 0 1279 4307 1333 6459;6460;6461;6462 6729 6729 1 AGVQSGTNALLVVK NELETRVRLSKRRAKAGVQSGTNALLVVKH KAGVQSGTNALLVVKHRDMNEKELEAQEAR K A G V K H 2 0 1 0 0 1 0 2 0 0 2 1 0 0 0 1 1 0 0 3 0 0 14 0 1355.7773 Q8N7H5 Q8N7H5 339 352 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.00033438 73.067 By MS/MS By MS/MS 1 2 1.3375 1.1384 6.0573 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0438 1.0442 NaN 1 0 Median 1.358 1.1558 2.1435 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28081000 13717000 14364000 0 0 0 0 0 0 20877000 10609000 10268000 7203500 3107600 4095900 0 0 0 0 0 0 1280 3393 1334 6463;6464;6465 6730;6731;6732 6730 3 AGVQSVGEKESLEAAK DDEEKGEGTPREEGKAGVQSVGEKESLEAA GVQSVGEKESLEAAKEKKKEDDDGEIDDGE K A G A K E 3 0 0 0 0 1 3 2 0 0 1 2 0 0 0 2 0 0 0 2 0 0 16 1 1601.8261 Q86VM9;E7ERS3 Q86VM9 169 184 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 2;3 6.8489E-07 86.497 By MS/MS By MS/MS By MS/MS 1 3 1 0.9341 1.0697 20.094 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9341 1.0697 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0112 1.0863 14.736 3 0 Median 0.82136 0.7416 NaN 1 0 Median 31845000 14106000 17739000 0 0 0 0 0 0 4013100 2084000 1929100 0 0 0 25994000 10976000 15018000 1837800 1046200 791570 1281 884 1335 6466;6467;6468;6469;6470 6733;6734;6735;6736;6737;6738;6739;6740 6736 8 AGVSFSGHR ______________________________ ______________________________ M A G H R L 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 916.45151 Q16643;D6R9W4;D6RFI1 Q16643 2 10 DBN1 Drebrin yes no 2 0.00064361 93.429 By MS/MS By MS/MS By matching 1 1 1 1.2691 1.2234 57.269 3 Median 0.48357 0.46599 NaN 1 1 Median 1.4155 1.2234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2691 1.2879 NaN 1 0 Median NaN NaN NaN 0 0 Median 21305000 10724000 10581000 10363000 6257500 4105300 10430000 4220400 6209800 0 0 0 0 0 0 511900 246380 265520 0 0 0 1282 2991 1336 6471;6472;6473 6741;6742;6743 6742 3 AGVSISVVHGNLSEEAAK GGISCVLQDGCVFEKAGVSISVVHGNLSEE SISVVHGNLSEEAAKQMRSRGKVLKTKDGK K A G A K Q 3 0 1 0 0 0 2 2 1 1 1 1 0 0 0 3 0 0 0 3 0 0 18 0 1766.9163 P36551 P36551 203 220 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 2;3 1.0987E-05 53.252 By MS/MS By matching By MS/MS 2 1 1 1.0483 0.9333 25.377 4 Median 1.0707 0.98987 16.346 2 1 Median 1.1455 0.98778 NaN 1 0 Median 0.59763 0.61753 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70155000 35823000 34332000 54366000 25465000 28901000 2380900 1001300 1379600 13408000 9356300 4051500 0 0 0 0 0 0 0 0 0 1283 2259 1337 6474;6475;6476;6477 6744;6745;6746 6744 3 AGVSQVLNR ATGNWGDQKKAHQARAGVSQVLNRLTFAST KAHQARAGVSQVLNRLTFASTLSHLRRLNS R A G N R L 1 1 1 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 942.52468 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 457 465 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.00074849 100.45 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.18 1.0325 16.926 4 Median NaN NaN NaN 0 0 Median 1.3063 1.0962 NaN 1 0 Median 1.1651 1.276 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8269 0.85834 NaN 1 0 Median 1.1951 0.97245 NaN 1 0 Median 17893000 8647200 9245400 0 0 0 7520200 3216900 4303400 2373800 1135200 1238600 0 0 0 5970600 3319200 2651400 2028000 975940 1052000 1284 671 1338 6478;6479;6480;6481 6747;6748 6748 2 AGVSTNISTK TIKFNPPTGTDTMVKAGVSTNISTKHQCIT DTMVKAGVSTNISTKHQCITAMKEYESKSL K A G T K H 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 2 2 0 0 1 0 0 10 0 976.51892 P52948;A0A3B3ITD8 P52948 176 185 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.038915 31.422 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1.2428 1.0795 6.9565 5 Median NaN NaN NaN 0 0 Median 1.1289 1.1169 NaN 1 0 Median 0.91433 0.95155 NaN 1 0 Median 1.2428 1.0795 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2935 1.0907 5.5573 2 0 Median 4876800 2281000 2595900 0 0 0 920410 472510 447900 1231600 614010 617540 1445600 625570 820000 0 0 0 1279300 568890 710420 1285 2462 1339 6482;6483;6484;6485;6486 6749;6750;6751;6752 6752 4 AGVSVKPFQVK QVVGKLIEVVKKKNKAGVSVKPFQVKNHIW KKNKAGVSVKPFQVKNHIWVFINCLIENPT K A G V K N 1 0 0 0 0 1 0 1 0 0 0 2 0 1 1 1 0 0 0 3 0 0 11 1 1158.6761 Q02880;E9PCY5 Q02880 368 378 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.00085295 100.98 By MS/MS By matching By MS/MS 1 1 1 0.71291 0.76752 40.873 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64996 0.7508 NaN 1 0 Median 1.6485 1.5405 NaN 1 0 Median 0.71291 0.76752 NaN 1 0 Median NaN NaN NaN 0 0 Median 15444000 9368400 6075300 0 0 0 0 0 0 6205900 3976100 2229900 1108000 417880 690160 8129800 4974500 3155300 0 0 0 1286 2704 1340 6487;6488;6489 6753;6754 6753 2 AGVSVYGIVK GTAVHHLMMKYSEFRAGVSVYGIVKDSEDI YSEFRAGVSVYGIVKDSEDIYNLKNPTLFI R A G V K D 1 0 0 0 0 0 0 2 0 1 0 1 0 0 0 1 0 0 1 3 0 0 10 0 991.57023 Q96DG6 Q96DG6 150 159 CMBL Carboxymethylenebutenolidase homolog yes yes 2 0.0012408 67.277 By MS/MS By matching By MS/MS 2 1 1 1.0866 1.0142 21.287 4 Median 0.96123 0.89637 20.688 2 0 Median 1.5564 1.3015 NaN 1 0 Median 1.0502 0.99136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80461000 38346000 42115000 63340000 30963000 32377000 11840000 4863500 6976800 5280200 2519200 2761000 0 0 0 0 0 0 0 0 0 1287 3626 1341 6490;6491;6492;6493 6755;6756;6757;6758 6756 4 AGVVGPELHEQLLSAEK DPVRNQRLYVHEAVKAGVVGPELHEQLLSA VVGPELHEQLLSAEKAVTGYRDPYSGSTIS K A G E K A 2 0 0 0 0 1 3 2 1 0 3 1 0 0 1 1 0 0 0 2 0 0 17 0 1775.9418 Q15149;H0YDN1 Q15149 3552 3568 PLEC Plectin yes no 2;3 7.8512E-12 137.81 By MS/MS By MS/MS By MS/MS 2 2 2 1.0472 0.9771 9.7744 6 Median 0.99207 0.99592 7.6779 2 0 Median 1.0906 0.96171 7.2246 2 0 Median 0.93691 1.0055 18.563 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131410000 64215000 67193000 77076000 38567000 38508000 25102000 10957000 14145000 29230000 14691000 14539000 0 0 0 0 0 0 0 0 0 1288 2933 1342 6494;6495;6496;6497;6498;6499 6759;6760;6761;6762;6763;6764;6765;6766;6767;6768;6769;6770 6764 12 AGVVTPGITEDQLWR GAQLEASRNIVQNYRAGVVTPGITEDQLWR AGVVTPGITEDQLWRAKYVYDSAFHPDTGE R A G W R A 1 1 0 1 0 1 1 2 0 1 1 0 0 0 1 0 2 1 0 2 0 0 15 0 1640.8522 S4R3N9;A0A1P0AYU5;Q9BWM7 S4R3N9 55 69 SFXN3 Sideroflexin-3 yes no 2 0.0080653 32.498 By MS/MS By matching 1 1 0.75465 0.79772 28.589 2 Median 0.68424 0.65172 NaN 1 0 Median 0.83229 0.97645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4927900 2742500 2185400 4134200 2406400 1727800 793730 336120 457610 0 0 0 0 0 0 0 0 0 0 0 0 1289 329 1343 6500;6501 6771;6772 6771 2 AGVYPEKDQAENEDGAQENTFSMDPQLER DSQEDVDSWKASFLRAGVYPEKDQAENEDG GAQENTFSMDPQLERQVETIRNLVDSYVAI R A G E R Q 3 1 2 3 0 3 5 2 0 0 1 1 1 1 2 1 1 0 1 1 0 0 29 1 3267.4262 P50570 P50570 623 651 DNM2 Dynamin-2 yes yes 3 4.3991E-21 71.297 By matching By MS/MS By matching By matching 1 1 1 1 0.59778 0.66718 5.2932 3 Median 0.58984 0.61367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59778 0.67688 NaN 1 0 Median 0.69425 0.66718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24883000 14105000 10778000 4250300 2369300 1881000 0 0 0 19696000 11311000 8384700 782470 332190 450280 0 0 0 154570 92617 61949 1290 2417 1344 6502;6503;6504;6505 6773;6774 6774 2 AGWNELLIASFSHR HFSSLPLDDQVILLRAGWNELLIASFSHRS RAGWNELLIASFSHRSIDVRDGILLATGLH R A G H R S 2 1 1 0 0 0 1 1 1 1 2 0 0 1 0 2 0 1 0 0 0 0 14 0 1599.8158 P28702;A0A0G2JKR7;P19793;A0A087WZ88;P48443 P28702 374 387 RXRB;RXRA;RXRG Retinoic acid receptor RXR-beta;Retinoic acid receptor RXR-alpha;Retinoic acid receptor RXR-gamma no no 3 0.032397 17.8 By MS/MS By matching 3 1 1.0314 0.98063 8.3019 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.006 1.0378 8.0601 3 0 Median 1.0777 0.91605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3712100 1738500 1973600 0 0 0 0 0 0 3606700 1684400 1922300 105470 54132 51336 0 0 0 0 0 0 1291 280;2070 1345 6506;6507;6508;6509 6775 6775 1 AGYAHFLNVQGR PLPSPAAAGAPPAARAGYAHFLNVQGRTLY AARAGYAHFLNVQGRTLYDVILYGLQEHSE R A G G R T 2 1 1 0 0 1 0 2 1 0 1 0 0 1 0 0 0 0 1 1 0 0 12 0 1331.6735 Q5T440 Q5T440 94 105 IBA57 Putative transferase CAF17, mitochondrial yes yes 3 0.00080952 47.288 By MS/MS 1 1.3835 1.1563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3835 1.1563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1463300 562990 900360 0 0 0 0 0 0 0 0 0 1463300 562990 900360 0 0 0 0 0 0 1292 3087 1346 6510 6776;6777 6776 2 AGYEYVSPEQLAGFDKYK ______________________________ EYVSPEQLAGFDKYKYSAVDTNPLSLYVMH M A G Y K Y 2 0 0 1 0 1 2 2 0 0 1 2 0 1 1 1 0 0 3 1 0 0 18 1 2063.984 C9JAG1;A0A087WW58;Q9C0D9 C9JAG1 2 19 EPT1 Ethanolaminephosphotransferase 1 yes no 2 4.7021E-06 54.7 By MS/MS 1 0.88505 0.87972 NaN 1 Median 0.88505 0.87972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3805300 1654400 2150900 3805300 1654400 2150900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1293 53 1347 6511 6778 6778 1 AGYIIPLQGPGLTTTESR VTLPAPLDTINVHLRAGYIIPLQGPGLTTT IIPLQGPGLTTTESRQQPMALAVALTKGGE R A G S R Q 1 1 0 0 0 1 1 3 0 2 2 0 0 0 2 1 3 0 1 0 0 0 18 0 1872.9945 P10253 P10253 820 837 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 2;3 9.0869E-06 56.225 By MS/MS By matching 2 1 0.50305 0.48863 88.405 3 Median 0.43381 0.428 18.737 2 0 Median 2.3165 1.9451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13367000 8654800 4711900 12974000 8532200 4441900 392570 122560 270010 0 0 0 0 0 0 0 0 0 0 0 0 1294 1935 1348 6512;6513;6514 6779;6780;6781 6780 3 AGYPQYVSEILEK LMDRDLLQIIFSFSKAGYPQYVSEILEKVT SKAGYPQYVSEILEKVTCERRYIPDAMNLI K A G E K V 1 0 0 0 0 1 2 1 0 1 1 1 0 0 1 1 0 0 2 1 0 0 13 0 1495.7559 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 315 327 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 5.5866E-05 87.298 By MS/MS By MS/MS By matching 1 1 1 1.3737 1.1849 20.432 3 Median 1.0115 0.98231 NaN 1 0 Median 1.3737 1.1849 NaN 1 0 Median 1.3782 1.4775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12622000 5852700 6769400 7331300 3591400 3739900 3702400 1624100 2078200 1588500 637250 951290 0 0 0 0 0 0 0 0 0 1295 2315 1349 6515;6516;6517 6782;6783;6784;6785;6786 6785 5 AGYQDMPEYENFK QIVIYLGETIAQWRKAGYQDMPEYENFKHL RKAGYQDMPEYENFKHLLQAPLDDAQEILQ K A G F K H 1 0 1 1 0 1 2 1 0 0 0 1 1 1 1 0 0 0 2 0 0 0 13 0 1590.6661 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 654 666 SEC23B Protein transport protein Sec23B yes no 2 0.013272 51.092 By MS/MS 2 0.94466 0.92084 4.7665 2 Median 0.94466 0.92084 4.7665 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5533800 3131300 2402500 5533800 3131300 2402500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1296 401 1350 6518;6519 6787;6788 6787 2 AGYSQGATQYTQAQQTR PQPSVAETYYQTAPKAGYSQGATQYTQAQQ YSQGATQYTQAQQTRQVTAIKPATPSPATT K A G T R Q 3 1 0 0 0 5 0 2 0 0 0 0 0 0 0 1 3 0 2 0 0 0 17 0 1857.8606 Q96KR1 Q96KR1 192 208 ZFR Zinc finger RNA-binding protein yes yes 2 4.2182E-13 121.04 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.0868 1.0591 4.8329 4 Median NaN NaN NaN 0 0 Median 1.1703 1.0079 NaN 1 0 Median 1.0092 1.1102 NaN 1 0 Median 1.2776 1.0959 NaN 1 0 Median 0.97429 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median 10360000 4809200 5550300 0 0 0 1646500 678470 968080 4895000 2518600 2376400 615860 231600 384260 3202100 1380500 1821600 0 0 0 1297 3697 1351 6520;6521;6522;6523;6524 6789;6790;6791;6792 6790 4 AGYSTDESSSSSLHATR FRPPGSGRGSGGSDKAGYSTDESSSSSLHA YSTDESSSSSLHATRTYGGSYGGRGRGRRT K A G T R T 2 1 0 1 0 0 1 1 1 0 1 0 0 0 0 6 2 0 1 0 0 0 17 0 1754.7707 P51116 P51116 407 423 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 4.2243E-11 104.45 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1528 1.0308 21.737 4 Median 0.78386 0.7783 NaN 1 0 Median 1.1017 0.95479 NaN 1 0 Median 1.2062 1.2942 NaN 1 0 Median 1.2918 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7038900 3175700 3863200 1264500 672000 592520 2812900 1293700 1519200 1409400 607710 801670 1552100 602280 949800 0 0 0 0 0 0 1298 2426 1352 6525;6526;6527;6528 6793;6794;6795;6796;6797;6798 6795 6 AGYTDKVVIGMDVAASEFFR ENKEGLELLKTAIGKAGYTDKVVIGMDVAA KVVIGMDVAASEFFRSGKYDLDFKSPDDPS K A G F R S 3 1 0 2 0 0 1 2 0 1 0 1 1 2 0 1 1 0 1 3 0 0 20 1 2175.067 P06733;A0A2R8Y6G6 P06733 234 253 ENO1 Alpha-enolase yes no 3 9.319E-07 50.425 By MS/MS By matching 1 1 1.118 1.103 3.1149 2 Median 1.1287 1.1276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1073 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4318700 2080400 2238300 4126600 2001000 2125600 0 0 0 0 0 0 192110 79371 112740 0 0 0 0 0 0 1299 1873 1353 6529;6530 6799;6800 6800 634 2 AHAASVFLTLLHFDSPPIPHVPHR CCVAQQASEKIDRFRAHAASVFLTLLHFDS LLHFDSPPIPHVPHRGELEKLFPRSDVASV R A H H R G 3 1 0 1 0 0 0 0 4 1 3 0 0 2 4 2 1 0 0 2 0 0 24 0 2658.4183 Q9BTW9;J3KR97;A0A0J9YVR1;A0A0J9YWI5;I3L120;A0A0J9YXU4 Q9BTW9 919 942 TBCD Tubulin-specific chaperone D yes no 4 0.0049607 27.495 By MS/MS 1 0.96781 0.85657 NaN 1 Median NaN NaN NaN 0 0 Median 0.96781 0.85657 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 643780 334080 309700 0 0 0 643780 334080 309700 0 0 0 0 0 0 0 0 0 0 0 0 1300 1324 1354 6531 6801 6801 1 AHAAVWNAQEAQADFAK NKYDDNVKAYFKRGKAHAAVWNAQEAQADF AAVWNAQEAQADFAKVLELDPALAPVVSRE K A H A K V 7 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 17 0 1826.87 O00170;E9PMH2 O00170 274 290 AIP AH receptor-interacting protein yes no 2;3 2.9843E-10 99.215 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 1 2 1.2078 1.0047 14.755 8 Median 1.032 0.95364 2.6496 2 0 Median 1.1933 1.0013 NaN 1 0 Median 1.1514 1.105 14.821 2 0 Median 1.226 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4524 1.2088 25.679 2 0 Median 68457000 32238000 36219000 35522000 17254000 18268000 5326900 2524000 2802900 23186000 10563000 12623000 1399500 586790 812660 0 0 0 3023300 1310300 1713000 1301 1445 1355 6532;6533;6534;6535;6536;6537;6538;6539 6802;6803;6804;6805;6806;6807;6808;6809 6804 8 AHATLLGLANMETR HLSWLHEINSQELEKAHATLLGLANMETRY KAHATLLGLANMETRYFAKKKTLLGLSKLA K A H T R Y 3 1 1 0 0 0 1 1 1 0 3 0 1 0 0 0 2 0 0 0 0 0 14 0 1496.7769 Q8WUM0 Q8WUM0 949 962 NUP133 Nuclear pore complex protein Nup133 yes yes 3 5.0195E-07 130.1 By matching By MS/MS By MS/MS 1 2 2 1.2403 1.1169 21.023 5 Median NaN NaN NaN 0 0 Median 1.2403 1.0841 NaN 1 0 Median 1.1997 1.319 13.617 2 0 Median 1.1184 0.95199 22.593 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34675000 15307000 19368000 0 0 0 1135500 476760 658710 28673000 12486000 16187000 4866400 2344200 2522200 0 0 0 0 0 0 1302 3492 1356;1357 6540;6541;6542;6543;6544 6810;6811;6812;6813;6814;6815;6816 6815 1744 7 AHAWPSPYKDYEVK QLQNQPPQKEFSIPRAHAWPSPYKDYEVKK RAHAWPSPYKDYEVKKEGS___________ R A H V K K 2 0 0 1 0 0 1 0 1 0 0 2 0 0 2 1 0 1 2 1 0 0 14 1 1689.8151 Q8NFJ5 Q8NFJ5 340 353 GPRC5A Retinoic acid-induced protein 3 yes yes 3 8.5612E-05 75.012 By MS/MS 1 0.78077 0.74512 NaN 1 Median NaN NaN NaN 0 0 Median 0.78077 0.74512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9636300 5380200 4256100 0 0 0 9636300 5380200 4256100 0 0 0 0 0 0 0 0 0 0 0 0 1303 3439 1358 6545 6817 6817 1 AHAYGDPNAGLNSQLHYKR PNSETLASAYHANTRAHAYGDPNAGLNSQL GDPNAGLNSQLHYKRQMYQQQPEEYKDWSS R A H K R Q 3 1 2 1 0 1 0 2 2 0 2 1 0 0 1 1 0 0 2 0 0 0 19 1 2111.0297 Q9UGU0 Q9UGU0 1069 1087 TCF20 Transcription factor 20 yes yes 4 3.8948E-05 40.085 By MS/MS 1 0.77969 0.88255 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77969 0.88255 NaN 1 0 Median NaN NaN NaN 0 0 Median 3167400 1902200 1265200 0 0 0 0 0 0 0 0 0 0 0 0 3167400 1902200 1265200 0 0 0 1304 4265 1359 6546 6818 6818 1 AHDGGIYAISWSPDSTHLLSASGDK DGKTGEKVCALGGSKAHDGGIYAISWSPDS WSPDSTHLLSASGDKTSKIWDVSVNSVVST K A H D K T 3 0 0 3 0 0 0 3 2 2 2 1 0 0 1 5 1 1 1 0 0 0 25 0 2584.2194 O75083 O75083 232 256 WDR1 WD repeat-containing protein 1 yes yes 3 3.1751E-17 66.3 By MS/MS By matching By matching By matching 2 1 1 1 0.90447 0.96883 14.43 5 Median 0.98774 0.96079 19.898 2 0 Median 0.90447 0.78468 NaN 1 0 Median 0.88221 1.0348 NaN 1 0 Median 1.1301 0.96883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17538000 8492100 9046000 15104000 7363100 7740700 1117500 558660 558800 985450 424720 560730 331390 145590 185800 0 0 0 0 0 0 1305 1643 1360 6547;6548;6549;6550;6551 6819;6820 6820 2 AHEEQLKEAQAVPATLPELEATK SLVIRGTQGAEEVLRAHEEQLKEAQAVPAT AQAVPATLPELEATKASLKKLRAQAEAQQP R A H T K A 5 0 0 0 0 2 5 0 1 0 3 2 0 0 2 0 2 0 0 1 0 0 23 1 2502.2966 Q15149;H0YDN1 Q15149 1244 1266 PLEC Plectin yes no 3;4 1.6221E-12 61.612 By MS/MS By MS/MS 1 2 0.81112 0.88281 9.0421 3 Plateau 0.81112 0.88281 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70412 0.79936 9.8886 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43976000 20940000 23037000 32413000 15400000 17013000 0 0 0 11563000 5539500 6023900 0 0 0 0 0 0 0 0 0 1306 2933 1361 6552;6553;6554 6821;6822;6823 6822 3 AHEPTYFTVDCAEAGQGDVSIGIK KVKVYGPGVAKTGLKAHEPTYFTVDCAEAG DCAEAGQGDVSIGIKCAPGVVGPAEADIDF K A H I K C 3 0 0 2 1 1 2 3 1 2 0 1 0 1 1 1 2 0 1 2 0 0 24 0 2564.1853 P21333;Q60FE5;A0A087WWY3 P21333 786 809 FLNA Filamin-A no no 3 0.061591 6.7232 By MS/MS 1 0.82886 0.72454 NaN 1 Median NaN NaN NaN 0 0 Median 0.82886 0.72454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2352400 1289300 1063100 0 0 0 2352400 1289300 1063100 0 0 0 0 0 0 0 0 0 0 0 0 1307 2088;3120 1362 6555 6824 6824 1 AHEQALAELTK MKRSFSEFPSRKDSKAHEQALAELTKRLGA KDSKAHEQALAELTKRLGALEEPDMTGQLV K A H T K R 3 0 0 0 0 1 2 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1209.6354 Q15477 Q15477 781 791 SKIV2L Helicase SKI2W yes yes 2 1.4101E-09 128.01 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1308 2955 1363 6556 6825 6825 1 AHEVGAQGGPPVAQVEQDLPISR DAGAEWAAAVLKQERAHEVGAQGGPPVAQV GPPVAQVEQDLPISRENLTDLVVDTDTLGE R A H S R E 3 1 0 1 0 3 2 3 1 1 1 0 0 0 3 1 0 0 0 3 0 0 23 0 2354.1979 Q14676 Q14676 620 642 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 7.6536E-43 177.03 By MS/MS By MS/MS By MS/MS 2 4 1 0.76186 0.70196 23.818 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69381 0.75969 11.176 2 1 Median 0.79533 0.6804 32.554 4 0 Median 0.68169 0.71396 NaN 1 0 Median NaN NaN NaN 0 0 Median 103660000 62172000 41485000 0 0 0 0 0 0 93007000 56323000 36685000 6162000 3242400 2919600 4487600 2606500 1881100 0 0 0 1309 2887 1364 6557;6558;6559;6560;6561;6562;6563 6826;6827;6828;6829;6830;6831;6832;6833;6834;6835;6836 6829 11 AHFGLPSVEAEDKEGKPPISVK RIEYMIKGGKEYLMRAHFGLPSVEAEDKEG VEAEDKEGKPPISVKFEIPYFTTSGIQVRY R A H V K F 2 0 0 1 0 0 3 2 1 1 1 3 0 1 3 2 0 0 0 2 0 0 22 2 2334.222 E7ENJ6;Q9BXS5;K7EJL1;K7EQX3 E7ENJ6 305 326 AP1M1 AP-1 complex subunit mu-1 yes no 4 0.02068 14.775 By MS/MS 1 0.57495 0.67439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57495 0.67439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8325700 4588400 3737300 0 0 0 0 0 0 8325700 4588400 3737300 0 0 0 0 0 0 0 0 0 1310 864 1365 6564 6837 6837 1 AHFLQLR RCVNGKKKVLNKDGKAHFLQLRKDFDQKRA KVLNKDGKAHFLQLRKDFDQKRATIQFHQP K A H L R K 1 1 0 0 0 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 883.50282 Q8IUF8 Q8IUF8 119 125 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.017598 65.263 By MS/MS By MS/MS 1 1 1.4113 1.3426 8.3996 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3502 1.4247 NaN 1 0 Median 1.4752 1.2652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4484800 1853700 2631100 0 0 0 0 0 0 1222200 473820 748410 3262600 1379900 1882700 0 0 0 0 0 0 1311 3313 1366 6565;6566 6838;6839;6840 6839 3 AHFNAMFQPSSPTR GLASPLGHRMQLESRAHFNAMFQPSSPTRR RAHFNAMFQPSSPTRRPGFSPTSHRLLPTP R A H T R R 2 1 1 0 0 1 0 0 1 0 0 0 1 2 2 2 1 0 0 0 0 0 14 0 1589.7409 Q8WUA4;H0Y4Q6 Q8WUA4 883 896 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.00034786 49.483 By MS/MS 1 0.46853 0.50017 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46853 0.50017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4991200 3262000 1729200 0 0 0 0 0 0 4991200 3262000 1729200 0 0 0 0 0 0 0 0 0 1312 3487 1367 6567 6841 6841 1 AHGFTFTR EAGINPTDHLITAYRAHGFTFTRGLSVREI HLITAYRAHGFTFTRGLSVREILAELTGRK R A H T R G 1 1 0 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 8 0 935.46135 P08559;Q5JPU0;Q5JPT9;Q5JPU1 P08559 120 127 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.0081051 64.265 By MS/MS By MS/MS 2 2 1.0991 1.0677 12.221 4 Median 1.0869 1.0677 7.0482 2 0 Median 1.1764 1.0097 19.161 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15067000 6665600 8400900 5547900 2563200 2984700 9518600 4102400 5416200 0 0 0 0 0 0 0 0 0 0 0 0 1313 1902 1368 6568;6569;6570;6571 6842;6843;6844 6844 3 AHGGYSVFAGVGER GKTVLIMELINNVAKAHGGYSVFAGVGERT KAHGGYSVFAGVGERTREGNDLYHEMIESG K A H E R T 2 1 0 0 0 0 1 4 1 0 0 0 0 1 0 1 0 0 1 2 0 0 14 0 1405.6739 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 226 239 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 1.8593E-08 162.26 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 7 6 1 1 1 2 1.4482 1.2421 19.325 16 Median 1.0951 1.0144 9.4059 5 0 Median 1.5814 1.3363 15.239 6 1 Median 1.0966 1.0838 NaN 1 0 Median 1.6213 1.3953 NaN 1 0 Median 1.8284 1.836 NaN 1 0 Median 1.5118 1.3 1.7566 2 0 Median 277810000 130530000 147280000 232290000 112360000 119930000 25681000 10739000 14942000 9880000 4319700 5560300 1862800 643750 1219100 5719400 1610500 4109000 2383300 860630 1522700 1314 1872 1369 6572;6573;6574;6575;6576;6577;6578;6579;6580;6581;6582;6583;6584;6585;6586;6587;6588;6589 6845;6846;6847;6848;6849;6850;6851;6852;6853;6854;6855;6856;6857;6858;6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869 6846 25 AHGLEVEPSALEQGFR RLRHPLGEAYATKARAHGLEVEPSALEQGF HGLEVEPSALEQGFRQAYRAQSHSFPNYGL R A H F R Q 2 1 0 0 0 1 3 2 1 0 2 0 0 1 1 1 0 0 0 1 0 0 16 0 1738.8638 Q9BSH5 Q9BSH5 35 50 HDHD3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 yes yes 3 1.1472E-05 80.706 By MS/MS By matching 1 1 0.81567 0.73281 11.582 2 Median 0.7125 0.67519 NaN 1 0 Median 0.93377 0.79535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10425000 5701100 4724100 9394000 5159700 4234300 1031200 541410 489830 0 0 0 0 0 0 0 0 0 0 0 0 1315 3814 1370 6590;6591 6870 6870 1 AHGLLAEENR AEKASYAEQLSMLKKAHGLLAEENRGLGER SMLKKAHGLLAEENRGLGERANLGRQFLEV K A H N R G 2 1 1 0 0 0 2 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1108.5625 A0A087WY61;K4DIE0;Q14980 Q14980 1443 1452 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00038325 88.948 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.0237 0.88213 4.0307 6 Median NaN NaN NaN 0 0 Median 1.0827 0.91072 NaN 1 0 Median 0.76981 0.85348 NaN 1 0 Median 1.0428 0.9175 NaN 1 0 Median 0.88563 0.90839 NaN 1 0 Median 1.0237 0.84665 1.658 2 0 Median 24690000 12740000 11951000 0 0 0 1918400 875670 1042700 3346300 1901400 1444800 1233300 618110 615230 13116000 6937400 6178400 5076600 2407200 2669400 1316 2905;77 1371 6592;6593;6594;6595;6596;6597 6871;6872;6873;6874;6875;6876;6877;6878;6879 6874 9 AHGLLAEENRGLGER AEKASYAEQLSMLKKAHGLLAEENRGLGER AHGLLAEENRGLGERANLGRQFLEVELDQA K A H E R A 2 2 1 0 0 0 3 3 1 0 3 0 0 0 0 0 0 0 0 0 0 0 15 1 1620.8332 A0A087WY61;K4DIE0;Q14980 Q14980 1443 1457 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.001201 48.704 By MS/MS 1 0.68624 0.74236 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68624 0.74236 NaN 1 1 Median NaN NaN NaN 0 0 Median 4626600 2782100 1844500 0 0 0 0 0 0 0 0 0 0 0 0 4626600 2782100 1844500 0 0 0 1317 2905;77 1372 6598 6880 6880 1 AHGPGLEGGLVGK YTVEASLPPDPSKVKAHGPGLEGGLVGKPA VKAHGPGLEGGLVGKPAEFTIDTKGAGTGG K A H G K P 1 0 0 0 0 0 1 5 1 0 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1190.6408 O75369;E7EN95 O75369 1045 1057 FLNB Filamin-B yes no 3 0.02229 33.195 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3452800 0 3452800 0 0 0 3452800 0 3452800 0 0 0 0 0 0 0 0 0 0 0 0 1318 1664 1373 6599;6600 6881;6882 6881 2 AHGPGLEGGLVGKPAEFTIDTK YTVEASLPPDPSKVKAHGPGLEGGLVGKPA GGLVGKPAEFTIDTKGAGTGGLGLTVEGPC K A H T K G 2 0 0 1 0 0 2 5 1 1 2 2 0 1 2 0 2 0 0 1 0 0 22 1 2193.143 O75369;E7EN95 O75369 1045 1066 FLNB Filamin-B yes no 2;3;4 1.7073E-17 85.457 By MS/MS By MS/MS By MS/MS 1 2 1 0.9054 0.88381 25.294 4 Median 1.3535 1.2999 NaN 1 1 Median 0.9054 0.87506 19.899 2 1 Median 0.67012 0.77548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30882000 16070000 14812000 13729000 6387800 7341300 6719300 3432700 3286600 10433000 6249400 4183900 0 0 0 0 0 0 0 0 0 1319 1664 1374 6601;6602;6603;6604 6883;6884;6885;6886 6883 4 AHIAFKPTVAQQR GHFDGVPVVSKGPQKAHIAFKPTVAQQRKC QKAHIAFKPTVAQQRKCLNCSETMVDGELV K A H Q R K 3 1 0 0 0 2 0 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 13 1 1465.8154 CON__Q9TRI1 CON__Q9TRI1 247 259 yes yes 3 4.2508E-05 93.959 By MS/MS By MS/MS 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6238200 6238200 0 3037700 3037700 0 3200500 3200500 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1320 793 1375 6605;6606;6607;6608 6887;6888;6889;6890 6890 4 AHIAQLCEK ADAILGNQMFTHYDRAHIAQLCEKAGLLQR FTHYDRAHIAQLCEKAGLLQRALEHFTDLY R A H E K A 2 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1068.5386 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 615 623 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.0040114 61.999 By MS/MS 2 1.1974 1.0556 24.39 2 Median NaN NaN NaN 0 0 Median 1.1974 1.0556 24.39 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6114000 2885200 3228800 0 0 0 6114000 2885200 3228800 0 0 0 0 0 0 0 0 0 0 0 0 1321 44 1376 6609;6610 6891;6892;6893;6894 6893 4 AHINLVR NDLQPLLAWLKVMEKAHINLVRLQWDLGLG AWLKVMEKAHINLVRLQWDLGLGHLPRFFG K A H V R L 1 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 Q5JTH9 Q5JTH9 397 403 RRP12 RRP12-like protein yes yes 2 0.0087724 85.306 By MS/MS By MS/MS 1 1 1.1731 1.1094 1.1098 2 Median NaN NaN NaN 0 0 Median 1.3094 1.1182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.051 1.1008 NaN 1 1 Median NaN NaN NaN 0 0 Median 5137000 2301700 2835300 0 0 0 3075800 1322400 1753400 0 0 0 0 0 0 2061200 979350 1081900 0 0 0 1322 3052 1377 6611;6612 6895;6896;6897 6896 3 AHIQSLFSFITGTK DVIWNSLSRSYFKDRAHIQSLFSFITGTKL RAHIQSLFSFITGTKLDSSGVAFAVVGACQ R A H T K L 1 0 0 0 0 1 0 1 1 2 1 1 0 2 0 2 2 0 0 0 0 0 14 0 1548.83 E7EN32;E7ENS2;E7EPR4;E7ET29 E7EN32 138 151 MEN1 yes no 3 0.029694 18.731 By matching By MS/MS 1 1 1.1197 1.0894 11.361 2 Median NaN NaN NaN 0 0 Median 1.1272 1.0053 NaN 1 0 Median 1.1122 1.1805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2746300 1332700 1413500 0 0 0 404980 200090 204890 2341300 1132700 1208700 0 0 0 0 0 0 0 0 0 1323 860 1378 6613;6614 6898 6898 1 AHIVFDFHQAADGIQEQQR KGLEGWEKRLIISDRAHIVFDFHQAADGIQ FDFHQAADGIQEQQRQEQAGKNLGTTKKGI R A H Q R Q 3 1 0 2 0 4 1 1 2 2 0 0 0 2 0 0 0 0 0 1 0 0 19 0 2209.0665 P30520 P30520 133 151 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 3 0.00015928 47.568 By MS/MS 1 0.81879 0.7887 NaN 1 Median 0.81879 0.7887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8641600 4236600 4405000 8641600 4236600 4405000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1324 2195 1379 6615 6899 6899 1 AHLGSSDNVATMSNEER KGHMEEKLSLLPRKKAHLGSSDNVATMSNE LGSSDNVATMSNEERSDGGFPNSVIAEFSE K A H E R S 2 1 2 1 0 0 2 1 1 0 1 0 1 0 0 3 1 0 0 1 0 0 17 0 1816.801 D6RB01;Q9Y6X4 D6RB01 462 478 FAM169A Soluble lamin-associated protein of 75 kDa yes no 3 6.4365E-06 74.141 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.3496 1.0984 12.713 5 Median NaN NaN NaN 0 0 Median 1.4089 1.2108 NaN 1 0 Median 0.93928 0.99643 NaN 1 0 Median 1.3667 1.1702 20.21 2 1 Median NaN NaN NaN 0 0 Median 1.3496 1.0984 NaN 1 0 Median 18672000 9788100 8883800 0 0 0 1802300 658450 1143800 13297000 7633700 5663200 2440500 1011700 1428700 0 0 0 1132200 484230 647960 1325 814 1380 6616;6617;6618;6619;6620 6900;6901;6902;6903;6904 6901 5 AHLGTALK SHRRDQKWHDKQYKKAHLGTALKANPFGGA HDKQYKKAHLGTALKANPFGGASHAKGIVL K A H L K A 2 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 809.47594 P62266;D6RD47;D6RIX0;D6R9I7;D6RDJ2 P62266 30 37 RPS23 40S ribosomal protein S23 yes no 2 0.0022926 117.93 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 2 1.2606 1.1517 6.4863 8 Median 1.126 1.0607 0.97159 2 0 Median 1.2176 1.044 NaN 1 0 Median 1.3052 1.2073 NaN 1 0 Median 1.383 1.1466 NaN 1 0 Median 1.1627 1.2289 NaN 1 0 Median 1.4419 1.1754 2.2554 2 0 Median 10331000 4565000 5766400 2550000 1204200 1345800 6632300 2887600 3744700 514990 226850 288140 375660 136670 238990 61193 32530 28663 197300 77153 120140 1326 2577 1381 6621;6622;6623;6624;6625;6626;6627;6628 6905;6906;6907;6908;6909 6908 5 AHLLADMAHISGLVAAK LIDYARMREVCDEVKAHLLADMAHISGLVA LLADMAHISGLVAAKVIPSPFKHADIVTTT K A H A K V 5 0 0 1 0 0 0 1 2 1 3 1 1 0 0 1 0 0 0 1 0 0 17 0 1716.9345 P34897;H0YIZ0;G3V2Y4;G3V4W5 P34897 246 262 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 3 9.2289E-06 57.788 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.2699 1.0748 17.253 7 Median 1.0968 1.0333 NaN 1 0 Median 1.2699 1.0748 NaN 1 0 Median 1.0202 1.0218 3.1145 2 1 Median 1.3903 1.1927 18.806 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41651000 18986000 22665000 5551700 2545700 3006100 19145000 8197000 10948000 7855000 4400500 3454500 9098600 3842500 5256000 0 0 0 0 0 0 1327 2228 1382;1383 6629;6630;6631;6632;6633;6634;6635 6910;6911;6912;6913;6914;6915;6916;6917 6917 967 8 AHLLDNTERLER NELLGDDGNSSENQRAHLLDNTERLERSSR NQRAHLLDNTERLERSSRRLEAGYQIAVET R A H E R S 1 2 1 1 0 0 2 0 1 0 3 0 0 0 0 0 1 0 0 0 0 0 12 1 1465.7637 Q96AJ9 Q96AJ9 116 127 VTI1A Vesicle transport through interaction with t-SNAREs homolog 1A yes yes 3 0.00052608 77.64 By MS/MS 1 1.2639 1.0734 NaN 1 Median NaN NaN NaN 0 0 Median 1.2639 1.0734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2691300 1111400 1580000 0 0 0 2691300 1111400 1580000 0 0 0 0 0 0 0 0 0 0 0 0 1328 3601 1384 6636 6918 6918 1 AHLLLQAHLSR PIESNPHSFDSPHTKAHLLLQAHLSRAMLP PHTKAHLLLQAHLSRAMLPCPDYDTDTKTV K A H S R A 2 1 0 0 0 1 0 0 2 0 4 0 0 0 0 1 0 0 0 0 0 0 11 0 1257.7306 Q8N3C0 Q8N3C0 1891 1901 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2;3 3.1181E-05 131.83 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.2983 1.2305 17.288 7 Median 1.2575 1.2231 5.2427 2 1 Median 1.4952 1.2305 28.428 3 1 Median 1.1433 1.2688 NaN 1 0 Median 1.3179 1.163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68697000 29500000 39196000 11923000 5349800 6573300 53856000 22737000 31119000 1947300 989960 957340 970420 423940 546480 0 0 0 0 0 0 1329 3366 1385 6637;6638;6639;6640;6641;6642;6643 6919;6920;6921;6922;6923 6922 4 AHLMEIQVNGGTVAEK IAHTQMRLLPLRQKKAHLMEIQVNGGTVAE HLMEIQVNGGTVAEKLDWARERLEQQVPVN K A H E K L 2 0 1 0 0 1 2 2 1 1 1 1 1 0 0 0 1 0 0 2 0 0 16 0 1695.8614 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2 P39023 178 193 RPL3 60S ribosomal protein L3 yes no 2;3 2.5966E-14 174.9 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 4 2 1.0793 1.0457 19.47 19 Median 1.0765 1.052 13.285 5 0 Median 1.0655 0.9361 16.311 5 1 Median 1.1406 1.1783 10.38 3 1 Plateau 1.1497 1.0343 35.824 4 1 Median 1.0217 0.9954 6.9772 2 0 Median NaN NaN NaN 0 0 Median 279140000 130140000 149000000 157770000 72941000 84833000 41324000 19051000 22274000 36375000 16590000 19785000 32131000 15908000 16223000 11532000 5648000 5883800 0 0 0 1330 2281 1386;1387 6644;6645;6646;6647;6648;6649;6650;6651;6652;6653;6654;6655;6656;6657;6658;6659;6660;6661;6662 6924;6925;6926;6927;6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943;6944;6945;6946 6942 1036 23 AHLSENELEALEK QLSGLHKQNLEIHRRAHLSENELEALEKND RRAHLSENELEALEKNDMEQMKYRDRAAER R A H E K N 2 0 1 0 0 0 4 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1481.7362 P98175 P98175 794 806 RBM10 RNA-binding protein 10 yes yes 2 0.0026016 47.261 By matching By MS/MS 1 1 1.24 1.1634 54.42 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6307 1.7094 NaN 1 0 Median 0.94283 0.7918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2933200 1310400 1622800 0 0 0 0 0 0 1558800 658770 900040 1374400 651660 722760 0 0 0 0 0 0 1331 2671 1388 6663;6664 6947 6947 1 AHLTNQYMQR KPLYVALAQRKEERKAHLTNQYMQRVAGMR KEERKAHLTNQYMQRVAGMRALPANAILNQ K A H Q R V 1 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1260.6033 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 376 385 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2;3 0.0024781 51.854 By MS/MS By MS/MS 2 3 1.2637 1.0932 31.008 5 Median 1.3666 1.3604 37.547 2 0 Median 1.2637 1.0932 25.279 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6621800 2826900 3794900 1785100 692270 1092900 4836600 2134600 2702000 0 0 0 0 0 0 0 0 0 0 0 0 1332 576;1151 1389 6665;6666;6667;6668;6669 6948;6949;6950;6951 6951 4 AHLTVGQAAAGGSGNLLTER REAGPSVAVDSSGRRAHLTVGQAAAGGSGN GQAAAGGSGNLLTERSTFTDSQLGNADMEM R A H E R S 4 1 1 0 0 1 1 4 1 0 3 0 0 0 0 1 2 0 0 1 0 0 20 0 1921.997 Q99959 Q99959 317 336 PKP2 Plakophilin-2 yes yes 3 1.3466E-31 132.79 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.80471 0.81348 27.045 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65959 0.70086 NaN 1 1 Median 1.5745 1.3144 NaN 1 0 Median 0.79201 0.79997 2.3684 2 2 Median 1.3136 1.1553 NaN 1 0 Median 50214000 29556000 20658000 0 0 0 0 0 0 8896300 5328400 3567900 1795500 733770 1061700 39110000 23324000 15786000 412660 169890 242770 1333 3773 1390 6670;6671;6672;6673;6674 6952;6953;6954;6955 6953 4 AHLVAVFNEYQR TDESKFNAVLCSRSRAHLVAVFNEYQRMTG RSRAHLVAVFNEYQRMTGRDIEKSICREMS R A H Q R M 2 1 1 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 1 2 0 0 12 0 1445.7415 P50995;H0Y6E1 P50995 389 400 ANXA11 Annexin A11 yes no 2;3 9.6859E-07 107.83 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 3 2 1 2 0.98534 0.95079 30.182 11 Median 1.0178 0.97332 3.3127 2 0 Median 1.2404 1.0564 NaN 1 0 Median 0.93088 0.93028 27.282 3 0 Median 0.95619 0.82334 25.092 2 0 Median 1.935 1.9427 NaN 1 0 Median 0.92135 0.79284 8.3844 2 0 Median 67705000 32497000 35208000 27362000 13540000 13822000 3820500 1546200 2274300 21704000 11302000 10402000 3608600 1671100 1937400 7304700 2397700 4906900 3905000 2039100 1865900 1334 2425 1391 6675;6676;6677;6678;6679;6680;6681;6682;6683;6684;6685 6956;6957;6958;6959;6960;6961;6962;6963;6964 6956 9 AHMGMFTELAILYSK EELITMLEAALGLERAHMGMFTELAILYSK AHMGMFTELAILYSKFKPQKMREHLELFWS R A H S K F 2 0 0 0 0 0 1 1 1 1 2 1 2 1 0 1 1 0 1 0 0 0 15 0 1710.8473 A0A087WVQ6;Q00610;J3KS13;P53675;A0A087WV74;A0A087WXH4 A0A087WVQ6 1316 1330 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 3 0.00010039 60.401 By MS/MS By MS/MS 1 6 1.3669 1.2791 26.068 7 Median 1.3598 1.2791 NaN 1 0 Median 1.4151 1.2645 28.419 6 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23555000 9470100 14085000 1730200 718830 1011400 21825000 8751300 13073000 0 0 0 0 0 0 0 0 0 0 0 0 1335 44 1392 6686;6687;6688;6689;6690;6691;6692 6965;6966;6967 6966 3 AHMLIDMHFR YQLVILSINEVTSKRAHMLIDMHFRSLRTK VTSKRAHMLIDMHFRSLRTKLSLIMRNEEA R A H F R S 1 1 0 1 0 0 0 0 2 1 1 0 2 1 0 0 0 0 0 0 0 0 10 0 1269.6111 R9WNI0;A8MQB8;G3V0J0;Q06787;A0A087WY29;Q8IXW7;A0A087WXI3 R9WNI0 181 190 FMR1 Fragile X mental retardation protein 1 yes no 3 0.058262 29.743 By MS/MS 1 1.0002 1.0578 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0002 1.0578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1688100 902550 785580 0 0 0 0 0 0 1688100 902550 785580 0 0 0 0 0 0 0 0 0 1336 539 1393 6693 6968 6968 0 AHMMNAIK KKVQTEVLQKRQQEKAHMMNAIKKYQKGFS QKRQQEKAHMMNAIKKYQKGFSDKLDFLEG K A H I K K 2 0 1 0 0 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 8 0 914.44663 H7C2Q8;Q99848 H7C2Q8 248 255 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.056226 53.71 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1337 1262 1394 6694 6969 6969 1 AHMNSVLMGMK MIRSRKAVSKLYASKAHMNSVLMGMKNQLA YASKAHMNSVLMGMKNQLAVLRVAGSLQKS K A H M K N 1 0 1 0 0 0 0 1 1 0 1 1 3 0 0 1 0 0 0 1 0 0 11 0 1217.5719 Q9Y3E7;A0A140T963 Q9Y3E7 82 92 CHMP3 Charged multivesicular body protein 3 yes no 2;3 0.016086 57.859 By MS/MS 2 1.1612 1.1369 NaN 1 Median 1.1612 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1585500 757860 827600 1585500 757860 827600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1338 4428 1395 6695;6696 6970;6971 6970 1 AHNNELEPTPGNTLR TIKKAKQDVIEVIEKAHNNELEPTPGNTLR AHNNELEPTPGNTLRQTFENQVNRILNDAR K A H L R Q 1 1 3 0 0 0 2 1 1 0 2 0 0 0 2 0 2 0 0 0 0 0 15 0 1661.8121 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 720 734 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2;3 9.7415E-07 89.624 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 0.74744 0.74377 85.794 7 Median NaN NaN NaN 0 0 Median 0.9503 0.81159 NaN 1 0 Median 0.74744 0.81738 NaN 1 0 Median 0.84649 0.74377 NaN 1 0 Median 0.49391 0.51801 141.41 3 1 Median 0.6708 0.55652 NaN 1 0 Median 50911000 24060000 26851000 0 0 0 4262700 2200800 2061900 9270700 5393700 3876900 2731800 1413000 1318800 30218000 12052000 18166000 4428200 2999900 1428400 1339 486 1396 6697;6698;6699;6700;6701;6702;6703 6972;6973;6974;6975;6976;6977;6978;6979;6980 6974 9 AHPVFYQGTYSQALNDAK DIVSFMHSFEEKYGRAHPVFYQGTYSQALN VFYQGTYSQALNDAKRELRFLLVYLHGDDH R A H A K R 3 0 1 1 0 2 0 1 1 0 1 1 0 1 1 1 1 0 2 1 0 0 18 0 2008.9643 Q96CS3 Q96CS3 150 167 FAF2 FAS-associated factor 2 yes yes 3 3.3752E-06 50.966 By MS/MS By matching By matching 1 1 1 0.98671 0.92579 10.506 3 Median 0.84343 0.79431 NaN 1 0 Median 1.064 0.92579 NaN 1 0 Median 0.98671 0.97127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12323000 6571700 5751600 5642200 3129000 2513200 1310500 561040 749440 5370600 2881600 2489000 0 0 0 0 0 0 0 0 0 1340 3620 1397 6704;6705;6706 6981 6981 1 AHQAHAVVAEEVAALTGELER ENEAALTPLALDCARAHQAHAVVAEEVAAL VVAEEVAALTGELERLWGGPVPPAPRTLIE R A H E R L 6 1 0 0 0 1 4 1 2 0 2 0 0 0 0 0 1 0 0 3 0 0 21 0 2200.1236 Q9UHR6 Q9UHR6 364 384 ZNHIT2 Zinc finger HIT domain-containing protein 2 yes yes 3 1.332E-08 69.763 By MS/MS 1 1.588 1.3855 NaN 1 Median NaN NaN NaN 0 0 Median 1.588 1.3855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10344000 3717000 6626800 0 0 0 10344000 3717000 6626800 0 0 0 0 0 0 0 0 0 0 0 0 1341 4282 1398 6707 6982 6982 1 AHQANQLYPFAISLIESVR LKWLGFRVPLAIVNKAHQANQLYPFAISLI NQLYPFAISLIESVRTYERTCEKVEERNTI K A H V R T 3 1 1 0 0 2 1 0 1 2 2 0 0 1 1 2 0 0 1 1 0 0 19 0 2156.1378 Q14204 Q14204 768 786 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 4.5469E-07 58.024 By MS/MS By MS/MS By matching 2 5 1 0.97105 0.88948 24.985 8 Median 0.85874 0.85275 2.3244 2 0 Median 1.1304 0.94128 22.329 5 1 Median 0.47079 0.52383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15767000 7706900 8059700 1147100 579020 568090 14521000 7069600 7451400 98464 58329 40135 0 0 0 0 0 0 0 0 0 1342 2865 1399 6708;6709;6710;6711;6712;6713;6714;6715 6983;6984;6985;6986;6987;6988 6985 6 AHQDIHTQLQDVK ETVYNLREENRQLRKAHQDIHTQLQDVKQQ RKAHQDIHTQLQDVKQQHKNLLSEHEQLVV K A H V K Q 1 0 0 2 0 3 0 0 2 1 1 1 0 0 0 0 1 0 0 1 0 0 13 0 1531.7743 O00461;F8W785 O00461 188 200 GOLIM4 Golgi integral membrane protein 4 yes no 3 0.0012461 40.066 By MS/MS 1 1.6182 1.3913 NaN 1 Median NaN NaN NaN 0 0 Median 1.6182 1.3913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088100 1449200 2638900 0 0 0 4088100 1449200 2638900 0 0 0 0 0 0 0 0 0 0 0 0 1343 1466 1400 6716 6989 6989 1 AHQITDESLESTRR ______________________________ RAHQITDESLESTRRILGLAIESQDAGIKT R A H R R I 1 2 0 1 0 1 2 0 1 1 1 0 0 0 0 2 2 0 0 0 0 0 14 1 1641.8071 H3BNE1;H3BR18;H3BM38;H3BPJ0;O00161;H3BNG6;H3BU94 H3BNE1 13 26 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 3;4 0.00024321 51.875 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 1.1132 0.97781 21.947 9 Median 0.98457 1.0524 23.891 2 0 Median 0.93762 0.79629 28.528 2 0 Median 1.1132 1.1543 NaN 1 0 Median 1.251 1.1202 21.816 2 0 Median 1.018 1.1041 17.176 2 0 Median NaN NaN NaN 0 0 Median 14929000 7315700 7613000 5135400 2550300 2585100 3124900 1654500 1470400 2638300 1352000 1286300 1487900 574770 913180 2542200 1184200 1358000 0 0 0 1344 1209 1401 6717;6718;6719;6720;6721;6722;6723;6724;6725 6990;6991;6992;6993;6994;6995 6993 6 AHQLVMEGYNWCHDR SETFNHANGLTLVSRAHQLVMEGYNWCHDR AHQLVMEGYNWCHDRNVVTIFSAPNYCYRC R A H D R N 1 1 1 1 1 1 1 1 2 0 1 0 1 0 0 0 0 1 1 1 0 0 15 0 1914.8254 P67775;P62714;H0YC23 P67775 240 254 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 3;4 9.2809E-05 55.173 By matching By MS/MS 1 2 1.1098 0.92298 2.0652 3 Plateau 0.84575 0.88844 NaN 1 0 Median 1.1068 0.92052 0.37684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24013000 11017000 12996000 3919600 1930600 1989100 20093000 9086800 11007000 0 0 0 0 0 0 0 0 0 0 0 0 1345 2594 1402 6726;6727;6728 6996;6997;6998 6997 3 AHQTGIHATEELK ______________________________ ______________________________ M A H L K E 2 0 0 0 0 1 2 1 2 1 1 1 0 0 0 0 2 0 0 0 0 0 13 0 1433.7263 Q6IBS0;D6RG15 Q6IBS0 2 14 TWF2 Twinfilin-2 yes no 3 2.8258E-05 85.845 By matching By MS/MS By matching 1 1 1 1.0713 0.92717 12.635 3 Plateau 0.77239 0.75889 NaN 1 0 Median 1.0751 0.92717 NaN 1 0 Median 0.85945 0.95856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3737000 1822600 1914500 760900 484590 276310 1909100 687500 1221600 1067000 650480 416510 0 0 0 0 0 0 0 0 0 1346 3138 1403 6729;6730;6731 6999 6999 1 AHQVVEDGYEFFAK VAKFLHKHDLDLICRAHQVVEDGYEFFAKR RAHQVVEDGYEFFAKRQLVTLFSAPNYCGE R A H A K R 2 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 14 0 1638.7678 P62140;P62136;E9PMD7;F8VYE8;P36873;F8W0W8 P62136 247 260 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2;3 2.4114E-08 107.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 6 3 2 1 1.05 0.96294 17.436 16 Median 1.0502 0.97281 36.024 3 0 Plateau 1.1233 0.94293 6.5153 2 0 Median 1.0435 1.0089 10.651 5 1 Median 1.1985 1.015 3.0199 3 0 Median 0.88411 0.87767 5.7491 2 0 Median 1.15 0.94213 NaN 1 0 Median 511340000 243440000 267900000 19422000 9998600 9423200 20936000 9643800 11292000 445720000 211690000 234030000 15843000 7037400 8806000 7290400 4257100 3033300 2124100 807140 1317000 1347 2569;1074;2570 1404 6732;6733;6734;6735;6736;6737;6738;6739;6740;6741;6742;6743;6744;6745;6746;6747;6748 7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010;7011;7012;7013;7014;7015;7016;7017;7018 7004 19 AHQVVEDGYEFFAKR VAKFLHKHDLDLICRAHQVVEDGYEFFAKR AHQVVEDGYEFFAKRQLVTLFSAPNYCGEF R A H K R Q 2 1 0 1 0 1 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 15 1 1794.8689 P62140;P62136;E9PMD7;F8VYE8;P36873;F8W0W8 P62136 247 261 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 7.7041E-05 51.546 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.2218 1.2361 20.288 4 Median NaN NaN NaN 0 0 Median 1.8497 1.7043 NaN 1 0 Median 0.96941 1.0551 NaN 1 0 Median 1.2703 1.1988 NaN 1 0 Median 1.175 1.2746 NaN 1 0 Median NaN NaN NaN 0 0 Median 11935000 5465900 6469200 0 0 0 741810 347910 393900 4672500 2426900 2245500 1236100 508090 728000 5284700 2182900 3101800 0 0 0 1348 2569;1074;2570 1405 6749;6750;6751;6752 7019;7020 7019 2 AHSGAQGLLAAQK GTLNLSVLLPLGLRKAHSGAQGLLAAQKAR RKAHSGAQGLLAAQKARGLFKDFFPETGTK K A H Q K A 4 0 0 0 0 2 0 2 1 0 2 1 0 0 0 1 0 0 0 0 0 0 13 0 1250.6731 Q9Y2Z4;H0YHS6 Q9Y2Z4 31 43 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 3 0.00376 34.179 By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1.2356 1.1813 54.451 6 Median 2.2653 2.2275 NaN 1 0 Median 0.90354 0.79261 83.149 2 0 Median 0.95751 0.97726 18.389 2 0 Median 1.4059 1.2538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5792000 2615300 3176700 1045200 307020 738180 1110300 588150 522110 1409000 734350 674640 2227600 985790 1241800 0 0 0 0 0 0 1349 4399 1406 6753;6754;6755;6756;6757;6758 7021;7022;7023 7023 2 AHSIQIMK VTQCYRDMGARHRARAHSIQIMKVEEIAAS GARHRARAHSIQIMKVEEIAASKCRRPAVK R A H M K V 1 0 0 0 0 1 0 0 1 2 0 1 1 0 0 1 0 0 0 0 0 0 8 0 926.50077 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 92 99 RPL18A 60S ribosomal protein L18a yes no 2 0.0027183 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1.1884 1.0881 12.864 8 Median 1.1682 1.0956 6.46 2 0 Median 1.1644 0.97934 NaN 1 0 Median 0.95168 0.89408 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.172 1.2866 5.1607 2 0 Median 1.3267 1.0859 5.7696 2 0 Median 36605000 16523000 20082000 15416000 6647300 8768800 4564300 1976000 2588300 8060100 4081400 3978600 0 0 0 5874800 2717200 3157500 2690000 1101200 1588800 1350 1433 1407 6759;6760;6761;6762;6763;6764;6765;6766 7024;7025;7026;7027;7028;7029;7030;7031 7029 8 AHSIQIMKVEEIAASK VTQCYRDMGARHRARAHSIQIMKVEEIAAS HSIQIMKVEEIAASKCRRPAVKQFHDSKIK R A H S K C 3 0 0 0 0 1 2 0 1 3 0 2 1 0 0 2 0 0 0 1 0 0 16 1 1753.9397 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 92 107 RPL18A 60S ribosomal protein L18a yes no 3 0.018968 44.567 By MS/MS 1 0.79259 0.71331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79259 0.71331 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1867300 965170 902150 0 0 0 0 0 0 0 0 0 1867300 965170 902150 0 0 0 0 0 0 1351 1433 1408 6767 7032 7032 458 1 AHSNPMADHTLR GAEAPPPQKRYYRQRAHSNPMADHTLRYPV RQRAHSNPMADHTLRYPVKPEEMDWSELYP R A H L R Y 2 1 1 1 0 0 0 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 12 0 1348.6306 Q9UBP6;F8VSD9;H0YHX0 Q9UBP6 25 36 METTL1 tRNA (guanine-N(7)-)-methyltransferase yes no 3 0.001449 41.242 By MS/MS 1 1.0658 0.90975 NaN 1 Median NaN NaN NaN 0 0 Median 1.0658 0.90975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 702810 304870 397940 0 0 0 702810 304870 397940 0 0 0 0 0 0 0 0 0 0 0 0 1352 4242 1409 6768 7033;7034 7033 2 AHSPALGVHSFSGVQR HSRSPSISNMAALSRAHSPALGVHSFSGVQ HSPALGVHSFSGVQRFNISSHNQSPKRHSI R A H Q R F 2 1 0 0 0 1 0 2 2 0 1 0 0 1 1 3 0 0 0 2 0 0 16 0 1648.8434 Q9H1A4 Q9H1A4 353 368 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 3;4 6.9694E-11 107.98 By MS/MS By MS/MS 3 2 0.99552 0.97655 11.498 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78034 0.85052 15.454 3 0 Median 1.1146 0.97989 0.48328 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35132000 18982000 16149000 0 0 0 0 0 0 27867000 15690000 12177000 7264400 3292200 3972200 0 0 0 0 0 0 1353 3933 1410 6769;6770;6771;6772;6773 7035;7036;7037;7038;7039;7040;7041 7040 7 AHSPMIAVGSDDSSPNAMAK KLSCSCISWNPSSSRAHSPMIAVGSDDSSP IAVGSDDSSPNAMAKVQIFEYNENTRKYAK R A H A K V 4 0 1 2 0 0 0 1 1 1 0 1 2 0 2 4 0 0 0 1 0 0 20 0 1984.8983 Q96EE3;K7ELV2;K7EP88;K7ENI5 Q96EE3 177 196 SEH1L Nucleoporin SEH1 yes no 3 3.1379E-19 112.82 By matching By MS/MS By MS/MS 1 4 3 0.77397 0.73522 10.185 8 Median NaN NaN NaN 0 0 Median 1.0248 0.87556 NaN 1 0 Median 0.73026 0.70075 7.3466 4 0 Median 0.95746 0.8149 11.374 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57513000 31278000 26235000 0 0 0 1287500 770730 516820 40991000 22710000 18281000 15235000 7797600 7437500 0 0 0 0 0 0 1354 3634 1411;1412 6774;6775;6776;6777;6778;6779;6780;6781 7042;7043;7044;7045;7046;7047;7048;7049;7050;7051 7043 1796;1797 10 AHSSMVGVNLPQK LGDVYVNDAFGTAHRAHSSMVGVNLPQKAG HRAHSSMVGVNLPQKAGGFLMKKELNYFAK R A H Q K A 1 0 1 0 0 1 0 1 1 0 1 1 1 0 1 2 0 0 0 2 0 0 13 0 1366.7027 P00558 P00558 172 184 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 5.9143E-42 227.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 7 6 4 1 1.0571 0.97596 15.01 27 Median 0.99196 0.91062 10.984 9 0 Median 1.2165 1.0251 14.165 7 0 Median 0.99332 0.98958 16.037 6 1 Median 1.2563 1.1263 13.891 4 0 Median 1.2286 1.2147 NaN 1 0 Median NaN NaN NaN 0 0 Median 477240000 223080000 254160000 259530000 126940000 132580000 126140000 55241000 70895000 58338000 27765000 30574000 31425000 12205000 19220000 1817400 924170 893190 0 0 0 1355 1824 1413;1414 6782;6783;6784;6785;6786;6787;6788;6789;6790;6791;6792;6793;6794;6795;6796;6797;6798;6799;6800;6801;6802;6803;6804;6805;6806;6807;6808 7052;7053;7054;7055;7056;7057;7058;7059;7060;7061;7062;7063;7064;7065;7066;7067;7068;7069;7070;7071;7072;7073;7074;7075;7076;7077;7078;7079;7080;7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095 7083 591 44 AHSVYNFEKPVVMK FQMVYNEFQKFVQRKAHSVYNFEKPVVMKA KAHSVYNFEKPVVMKAFEHLQQLELIKPME K A H M K A 1 0 1 0 0 0 1 0 1 0 0 2 1 1 1 1 0 0 1 3 0 0 14 1 1647.8443 O43929 O43929 361 374 ORC4 Origin recognition complex subunit 4 no no 3 5.62E-20 143.98 By MS/MS By MS/MS 1 1 0.44191 0.43977 5.0748 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43719 0.45584 NaN 1 1 Median 0.44669 0.42427 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33784000 22508000 11276000 0 0 0 0 0 0 16596000 11162000 5433900 17188000 11346000 5842100 0 0 0 0 0 0 + 1356 1602 1415 6809;6810 7096;7097 7097 2 AHTLLSPPSANNATFAR ______________________________ TLLSPPSANNATFARVPVATYTNSSQPFRL R A H A R V 4 1 2 0 0 0 0 0 1 0 2 0 0 1 2 2 2 0 0 0 0 0 17 0 1766.9064 F8W8R3;A0A087WWF6;P49005;C9IZD2;C9J8Z7;C9JLE1;C9JHC7 F8W8R3 10 26 POLD2 DNA polymerase delta subunit 2 yes no 3 1.4865E-15 117 By MS/MS By MS/MS 1 1 0.68352 0.63262 6.8639 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67042 0.66408 NaN 1 1 Median 0.69688 0.60265 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14587000 8261800 6325400 0 0 0 0 0 0 8322700 4626400 3696300 6264600 3635400 2629200 0 0 0 0 0 0 1357 58 1416 6811;6812 7098;7099 7099 2 AHTMTDDVTFWK KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS KMKAHTMTDDVTFWKWISLNTVALVTDNAV K A H W K W 1 0 0 2 0 0 0 0 1 0 0 1 1 1 0 0 3 1 0 1 0 0 12 0 1450.6551 A0A087WVQ6;Q00610;J3KSQ2 A0A087WVQ6 105 116 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 1.048E-06 157.78 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 3 2 1 1.1199 1.078 26.09 13 Median 1.1522 1.1044 10.067 4 1 Median 1.3582 1.1739 5.9436 3 0 Median 0.7441 0.82757 24.302 3 0 Median 1.4377 1.3039 43.205 2 0 Median 0.89232 0.92755 NaN 1 0 Median NaN NaN NaN 0 0 Median 117710000 56754000 60959000 94982000 44640000 50342000 4956800 2087200 2869500 15341000 8769000 6572300 1668300 851510 816830 764800 407110 357680 0 0 0 1358 44 1417;1418 6813;6814;6815;6816;6817;6818;6819;6820;6821;6822;6823;6824;6825 7100;7101;7102;7103;7104;7105;7106;7107;7108 7102 16 9 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR LDGRRIRVDYSITKRAHTPTPGIYMGRPTH GGGGGGGGGGGGGGRRRDSYYDRGYDRGYD R A H G R R 1 2 0 0 0 0 0 18 2 1 0 0 1 0 3 1 3 0 1 0 0 0 33 1 2790.2753 Q13595 Q13595 200 232 TRA2A Transformer-2 protein homolog alpha yes yes 4;5 8.0111E-53 108.88 By MS/MS By matching 3 1 0.71132 0.76531 13.066 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71692 0.76541 0.94579 3 0 Median 0.67403 0.59282 NaN 1 0 Median 16528000 10090000 6437600 0 0 0 0 0 0 0 0 0 0 0 0 15894000 9694100 6199700 633830 395910 237920 1359 2828 1419 6826;6827;6828;6829 7109;7110;7111 7110 3 AHTSSTQLQEELEK SSLKSAWQTLNEFARAHTSSTQLQEELEKV RAHTSSTQLQEELEKVANQIKEEEEKQVVE R A H E K V 1 0 0 0 0 2 3 0 1 0 2 1 0 0 0 2 2 0 0 0 0 0 14 0 1599.774 Q9Y6Y8 Q9Y6Y8 891 904 SEC23IP SEC23-interacting protein yes yes 2;3 1.3177E-08 108.56 By MS/MS By MS/MS 2 1 1.1965 1.1164 6.0963 3 Plateau 1.1465 1.1164 5.9489 2 0 Median 1.2162 1.0343 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17534000 7856800 9677400 11678000 5174500 6503900 5855800 2682300 3173500 0 0 0 0 0 0 0 0 0 0 0 0 1360 4502 1420 6830;6831;6832 7112;7113;7114;7115;7116 7114 5 AHVEGDGVVEGIIR QTLYVNTAADSFEFKAHVEGDGVVEGIIRY KAHVEGDGVVEGIIRYHPFLYDRETYPDDP K A H I R Y 1 1 0 1 0 0 2 3 1 2 0 0 0 0 0 0 0 0 0 3 0 0 14 0 1449.7576 A6NHR9 A6NHR9 415 428 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 6.2228E-06 124.1 By MS/MS By MS/MS 3 2 0.99465 1.0842 33.88 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99465 1.0842 39.044 3 0 Plateau 1.3293 1.1671 5.0743 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58802000 28232000 30570000 0 0 0 0 0 0 54362000 26303000 28059000 4439800 1928300 2511500 0 0 0 0 0 0 1361 518 1421 6833;6834;6835;6836;6837 7117;7118;7119;7120;7121;7122 7119 6 AHVIVMAATNRPNSIDPALR IVSQLLTLMDGLKQRAHVIVMAATNRPNSI MAATNRPNSIDPALRRFGRFDREVDIGIPD R A H L R R 4 2 2 1 0 0 0 0 1 2 1 0 1 0 2 1 1 0 0 2 0 0 20 1 2145.1477 P55072 P55072 339 358 VCP Transitional endoplasmic reticulum ATPase yes yes 3;4 9.1775E-09 70.335 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 1 1 0.85496 0.87604 13.819 10 Median 0.78901 0.82041 13.011 5 0 Median 0.92647 0.91663 8.4329 3 1 Median 0.86586 1.0005 NaN 1 0 Median 1.2029 1.0659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 177570000 94469000 83100000 143210000 77327000 65881000 27700000 13512000 14188000 4541700 2624100 1917500 2118900 1005300 1113600 0 0 0 0 0 0 1362 2494 1422 6838;6839;6840;6841;6842;6843;6844;6845;6846;6847 7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136 7124 14 AHVIVMAATNRPNSIDPALRR IVSQLLTLMDGLKQRAHVIVMAATNRPNSI AATNRPNSIDPALRRFGRFDREVDIGIPDA R A H R R F 4 3 2 1 0 0 0 0 1 2 1 0 1 0 2 1 1 0 0 2 0 0 21 2 2301.2488 P55072 P55072 339 359 VCP Transitional endoplasmic reticulum ATPase yes yes 3;4;5 1.0354E-11 63.691 By MS/MS By MS/MS By MS/MS 6 2 1 0.89722 1.0169 15.166 9 Median 0.82215 0.97275 10.151 6 0 Median 1.1535 1.1645 19.161 2 0 Median 0.97957 1.1883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84626000 42546000 42080000 78734000 39780000 38954000 2182300 1020300 1162000 3710300 1745500 1964800 0 0 0 0 0 0 0 0 0 1363 2494 1423 6848;6849;6850;6851;6852;6853;6854;6855;6856 7137;7138;7139;7140;7141;7142;7143 7138 6 AHVLAASVEQATENFLEK NSKGPSNKKRGRSKKAHVLAASVEQATENF LAASVEQATENFLEKGDKIAKESQFLKEEL K A H E K G 4 0 1 0 0 1 3 0 1 0 2 1 0 1 0 1 1 0 0 2 0 0 18 0 1955.9953 P35221;G3XAM7;E5RIB1;E5RG03;E5RGY6;E5RJL0;E5RIE0;E5RHV7;E5RFM3 P35221 58 75 CTNNA1 Catenin alpha-1 yes no 3 0.0389 21.233 By MS/MS 1 1.7218 1.8729 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7218 1.8729 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14623000 5596000 9027000 0 0 0 0 0 0 14623000 5596000 9027000 0 0 0 0 0 0 0 0 0 1364 2232 1424 6857 7144 7144 1 AHVLHFGK EFYMGVYETVNQNTKAHVLHFGKYRDVAEC TVNQNTKAHVLHFGKYRDVAECGPQQELDL K A H G K Y 1 0 0 0 0 0 0 1 2 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 907.50282 Q9BTE3 Q9BTE3 94 101 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.045832 35.633 By MS/MS By matching 1 1 1.1942 1.0905 10.771 2 Median 1.0431 1.0106 NaN 1 0 Median 1.3672 1.1768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4043400 1802200 2241200 1117900 540790 577090 2925500 1261400 1664100 0 0 0 0 0 0 0 0 0 0 0 0 1365 3825 1425 6858;6859 7145 7145 1 AHVQEVAQHNLK GKWLQDLQEENESLKAHVQEVAQHNLKEAS SLKAHVQEVAQHNLKEASSASQFEELEIVL K A H L K E 2 0 1 0 0 2 1 0 2 0 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1372.7211 Q86UP2;G3V4Y7 Q86UP2 909 920 KTN1 Kinectin yes no 2;3 4.9436E-05 86.114 By matching By MS/MS By matching By MS/MS By MS/MS 2 3 2 2 2 1.2375 1.1119 11.061 11 Median 1.0851 1.0657 30.982 2 0 Median 1.2934 1.096 4.2186 3 0 Median 1.1196 1.2035 2.9877 2 0 Median 1.2851 1.1158 1.3719 2 0 Median NaN NaN NaN 0 0 Median 1.28 1.0988 4.9653 2 0 Median 16065000 7492100 8573200 985590 435780 549810 11435000 5390900 6043900 1116900 531330 585560 1274900 557520 717360 0 0 0 1253200 576580 676620 1366 3280 1426 6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870 7146;7147;7148;7149;7150;7151;7152;7153 7149 8 AHVVPCFDASK NILFADTHIPGSPFKAHVVPCFDASKVKCS SPFKAHVVPCFDASKVKCSGPGLERATAGE K A H S K V 2 0 0 1 1 0 0 0 1 0 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1229.5863 P21333;Q60FE5;A0A087WWY3 P21333 1152 1162 FLNA Filamin-A no no 2;3 3.8629E-05 118.18 By MS/MS 4 0.81472 0.72969 8.9316 4 Median NaN NaN NaN 0 0 Median 0.81472 0.72969 8.9316 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137200000 73122000 64077000 0 0 0 137200000 73122000 64077000 0 0 0 0 0 0 0 0 0 0 0 0 1367 2088;3120 1427 6871;6872;6873;6874 7154;7155;7156;7157;7158 7154 5 AHWTPFEGQK LEHEWTIPSHMPFSKAHWTPFEGQKVKGTV MPFSKAHWTPFEGQKVKGTVRRVVLRGEVA K A H Q K V 1 0 0 0 0 1 1 1 1 0 0 1 0 1 1 0 1 1 0 0 0 0 10 0 1199.5724 F8VPD4;P27708;H7BZB3 F8VPD4 1706 1715 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00040021 77.732 By matching By MS/MS 1 1 1.4859 1.3723 53.548 2 Median 2.0841 2.004 NaN 1 0 Median 1.0594 0.93976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10486000 4183100 6302500 6006200 1881900 4124300 4479400 2301200 2178200 0 0 0 0 0 0 0 0 0 0 0 0 1368 1057 1428 6875;6876 7159 7159 1 AIADTGANVVVTGGK NFSKGEENLMDAQVKAIADTGANVVVTGGK AIADTGANVVVTGGKVADMALHYANKYNIM K A I G K V 3 0 1 1 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 3 0 0 15 0 1371.7358 P50990;H7C4C8 P50990 282 296 CCT8 T-complex protein 1 subunit theta yes no 2 1.3417E-11 118.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 2 1 1 1.2021 1.0769 19.213 15 Median 1.1685 1.0758 20.176 6 2 Median 1.206 1.0103 2.8516 4 1 Median 1.1928 1.1512 NaN 1 0 Median 1.3227 1.1313 4.9127 2 0 Median 1.9602 1.8716 NaN 1 0 Median 1.3087 1.077 NaN 1 0 Median 536210000 238970000 297240000 338410000 152240000 186170000 113320000 51771000 61554000 40130000 17158000 22972000 25529000 11242000 14287000 14079000 4707400 9371300 4735700 1852600 2883200 1369 2423 1429 6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887;6888;6889;6890;6891 7160;7161;7162;7163;7164;7165;7166;7167;7168;7169;7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187 7168 27 AIADWYNEK KESMKCGMWGRALRKAIADWYNEKGGMALA GRALRKAIADWYNEKGGMALALAVTKYKQR K A I E K G 2 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 9 0 1108.5189 P10155;H0Y9N5 P10155 151 159 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 2 0.0053299 57.96 By MS/MS 1 1.3525 1.2681 NaN 1 Median 1.3525 1.2681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6925200 3056700 3868500 6925200 3056700 3868500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1370 1934 1430 6892 7188 7188 1 AIAELGIYPAVDPLDSTSR ATTFAHLDATTVLSRAIAELGIYPAVDPLD LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA R A I S R I 3 1 0 2 0 0 1 1 0 2 2 0 0 0 2 2 1 0 1 1 0 0 19 0 1987.0262 P06576;H0YH81 P06576 388 406 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 1.6416E-18 120.14 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 1 0.74582 0.70383 60.442 11 Median 0.71739 0.69075 5.1136 4 0 Median 0.85621 0.72717 56.576 4 0 Median 0.73817 0.7314 36.583 2 0 Median NaN NaN NaN 0 0 Median 3.4007 3.419 NaN 1 1 Median NaN NaN NaN 0 0 Median 119560000 66228000 53335000 70992000 39974000 31018000 27991000 15247000 12745000 13978000 8846700 5131500 0 0 0 6601900 2160700 4441200 0 0 0 1371 1872 1431 6893;6894;6895;6896;6897;6898;6899;6900;6901;6902;6903 7189;7190;7191;7192;7193;7194;7195;7196;7197;7198;7199;7200;7201;7202;7203 7201 15 AIAFLQQPR IKFEGAIYRKDVGFRAIAFLQQPRSLTYKE KDVGFRAIAFLQQPRSLTYKESGVDIAAGN R A I P R S 2 1 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1042.5924 P22102 P22102 425 433 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.00056161 114.19 By MS/MS By MS/MS By matching By matching By matching 3 6 1 1 1 0.95926 0.85323 18.165 12 Median 0.95374 0.91844 7.0593 3 0 Median 0.95974 0.79659 13.314 6 1 Median 0.97277 0.9801 NaN 1 0 Median 0.93547 0.81564 NaN 1 0 Median 1.2804 1.2992 NaN 1 0 Median NaN NaN NaN 0 0 Median 46919000 23557000 23363000 26743000 13896000 12847000 15745000 7582300 8162400 2853700 1366900 1486800 984000 474080 509920 593730 237570 356160 0 0 0 1372 2098 1432 6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914;6915 7204;7205;7206;7207;7208;7209;7210;7211;7212;7213;7214 7205 11 AIAGVINQPYYNYEAGPDAVLGR LDNVTVLIGIAYEGKAIAGVINQPYYNYEA PYYNYEAGPDAVLGRTIWGVLGLGAFGFQL K A I G R T 4 1 2 1 0 1 1 3 0 2 1 0 0 0 2 0 0 0 3 2 0 0 23 0 2450.223 O95861;F8VZG4;F8W1J0;F8VRY7 O95861 145 167 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 2 6.1701E-06 38.787 By MS/MS By matching 1 1 0.4467 0.41929 83.789 2 Median 0.7426 0.75828 NaN 1 0 Median 0.26871 0.23185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1342600 773040 569540 1187800 668530 519250 154800 104510 50289 0 0 0 0 0 0 0 0 0 0 0 0 1373 1799 1433 6916;6917 7215;7216 7216 2 AIAHYEQSADYYK SIAEIYETELVDIEKAIAHYEQSADYYKGE EKAIAHYEQSADYYKGEESNSSANKCLLKV K A I Y K G 3 0 0 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 3 0 0 0 13 0 1557.71 M0R0Y2;P54920;M0R2M1;M0R027;M0R058 M0R0Y2 102 114 NAPA Alpha-soluble NSF attachment protein no no 2;3 0.00010725 74.46 By MS/MS By MS/MS By matching 2 2 1 1.1068 0.98436 10.159 5 Median 0.99056 0.93846 6.753 2 0 Median 1.1873 0.9993 9.7569 2 0 Median NaN NaN NaN 0 0 Median 1.3626 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29837000 13831000 16006000 13854000 6476500 7377700 13067000 6090200 6976500 0 0 0 2916000 1264800 1651300 0 0 0 0 0 0 1374 1430 1434 6918;6919;6920;6921;6922 7217;7218;7219;7220;7221;7222;7223 7221 7 AIAHYEQSADYYKGEESNSSANK SIAEIYETELVDIEKAIAHYEQSADYYKGE ADYYKGEESNSSANKCLLKVAGYAALLEQY K A I N K C 4 0 2 1 0 1 3 1 1 1 0 2 0 0 0 4 0 0 3 0 0 0 23 1 2561.1306 M0R0Y2;P54920;M0R2M1;M0R027;M0R058 M0R0Y2 102 124 NAPA Alpha-soluble NSF attachment protein no no 3;4 3.5847E-20 94.463 By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1.1283 1.0161 20.435 7 Median 0.98965 0.96473 3.8022 2 0 Median 1.1472 1.0331 2.3499 2 0 Median 1.0847 1.1376 17.26 2 0 Median 1.9047 1.6725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39383000 17799000 21584000 13097000 6311600 6785100 16726000 7508400 9217300 5980700 2622300 3358400 3579900 1356900 2223000 0 0 0 0 0 0 1375 1430 1435 6923;6924;6925;6926;6927;6928;6929 7224;7225;7226;7227;7228;7229;7230;7231;7232 7231 9 AIALATLQIINDR RQARWFWEAYFQSIKAIALATLQIINDRIY IKAIALATLQIINDRIYPYAAISYEEWNDP K A I D R I 3 1 1 1 0 1 0 0 0 3 2 0 0 0 0 0 1 0 0 0 0 0 13 0 1410.8195 Q93063 Q93063 405 417 EXT2 Exostosin-2 yes yes 2 0.00058618 69.979 By MS/MS 1 1.3178 1.1509 NaN 1 Median NaN NaN NaN 0 0 Median 1.3178 1.1509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1777900 716890 1061000 0 0 0 1777900 716890 1061000 0 0 0 0 0 0 0 0 0 0 0 0 1376 3577 1436 6930 7233 7233 1 AIAMSLGQDIPMDQR VVRDLSMSEEDQMMRAIAMSLGQDIPMDQR AIAMSLGQDIPMDQRAESPEEVACRKEEEE R A I Q R A 2 1 0 2 0 2 0 1 0 2 1 0 2 0 1 1 0 0 0 0 0 0 15 0 1644.7964 Q7Z6Z7 Q7Z6Z7 1378 1392 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 8.3229E-10 158.05 By MS/MS By MS/MS 4 2 0.84637 0.83492 12.919 6 Median 0.78816 0.77483 8.2633 4 0 Median 1.1378 0.96097 6.4671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65589000 34750000 30839000 59119000 31745000 27374000 6470000 3005300 3464700 0 0 0 0 0 0 0 0 0 0 0 0 1377 3253 1437 6931;6932;6933;6934;6935;6936 7234;7235;7236;7237;7238;7239;7240;7241 7236 8 AIANVPPIQEK ESDAEAEAVREVYERAIANVPPIQEKRHWK VYERAIANVPPIQEKRHWKRYIYLWINYAL R A I E K R 2 0 1 0 0 1 1 0 0 2 0 1 0 0 2 0 0 0 0 1 0 0 11 0 1178.6659 Q5JY65;Q9BZJ0 Q5JY65 505 515 CRNKL1 Crooked neck-like protein 1 yes no 2 0.00089327 85.676 By MS/MS 1 0.81527 0.83906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81527 0.83906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7902200 3827300 4074900 0 0 0 0 0 0 7902200 3827300 4074900 0 0 0 0 0 0 0 0 0 1378 3061 1438 6937 7242 7242 1 AIAQLAANR TILCCQERMKLHLDKAIAQLAANRASQHEL KLHLDKAIAQLAANRASQHELEKDLSDKQT K A I N R A 4 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 926.52976 F5H5M8;Q9BXF9 F5H5M8 74 82 TEKT3 Tektin-3 yes no 2 0.00049756 100.45 By MS/MS 1 1.284 1.0917 NaN 1 Median NaN NaN NaN 0 0 Median 1.284 1.0917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11289000 5121200 6167900 0 0 0 11289000 5121200 6167900 0 0 0 0 0 0 0 0 0 0 0 0 1379 1036 1439 6938 7243 7243 1 AIATVSENTKQEAIDEVKR RTQLWEAQAEMENIKAIATVSENTKQEAID VSENTKQEAIDEVKRQWREEVASLQAVMKE K A I K R Q 3 1 1 1 0 1 3 0 0 2 0 2 0 0 0 1 2 0 0 2 0 0 19 2 2101.1015 Q15276 Q15276 90 108 RABEP1 Rab GTPase-binding effector protein 1 yes yes 3 1.818E-18 110.37 By MS/MS 1 0.9861 1.1208 NaN 1 Median 0.9861 1.1208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5544600 2649800 2894800 5544600 2649800 2894800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1380 2937 1440 6939 7244;7245 7244 2 AIAVLTSGGDAQGMNAAVR THEEHHAAKTLGIGKAIAVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRVGIFTGARVFF K A I V R A 5 1 1 1 0 1 0 3 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1800.9152 A0A2R8Y891;P08237;F8VZI0;F8VP00;F8VX13;F8VZQ1;F8VSF7;F8VTQ3;F8VW30;F8VUB8;F8VYK8;F8VVE3 A0A2R8Y891 120 138 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 1.3801E-24 171.29 By MS/MS By matching 1 1 0.85116 0.85057 34.263 2 Median 1.1455 1.0838 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63248 0.66757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15685000 8092600 7592900 12004000 5675400 6328900 0 0 0 3681200 2417300 1263900 0 0 0 0 0 0 0 0 0 1381 390 1441 6940;6941 7246;7247 7246 2 AIAVTVQEMVTK GSFVDYQTTMVRTAKAIAVTVQEMVTKSNT TAKAIAVTVQEMVTKSNTSPEELGPLANQL K A I T K S 2 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 2 0 0 3 0 0 12 0 1288.7061 Q9Y490 Q9Y490 1863 1874 TLN1 Talin-1 yes yes 2 0.00035803 96.89 By MS/MS By MS/MS 1 2 1.1528 1.1037 5.8601 3 Plateau 1.1528 1.1037 NaN 1 1 Median 1.1795 1.0453 6.9988 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62765000 28378000 34386000 38662000 17313000 21349000 24103000 11066000 13037000 0 0 0 0 0 0 0 0 0 0 0 0 1382 4441 1442 6942;6943;6944 7248;7249;7250 7248 3 AIAYLFPSGLFEK MGEDPETFTQEDIDRAIAYLFPSGLFEKRA DRAIAYLFPSGLFEKRARPVMKHPEQIFPR R A I E K R 2 0 0 0 0 0 1 1 0 1 2 1 0 2 1 1 0 0 1 0 0 0 13 0 1454.781 P82933 P82933 107 119 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 2 0.00078326 65.347 By MS/MS By matching By matching 2 1 1 0.93637 0.89741 18.277 4 Median 0.89808 0.86681 0.83425 2 0 Median 1.4583 1.2696 NaN 1 0 Median 0.95077 0.92361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8109500 4109000 4000500 7710000 3931500 3778500 181260 68957 112310 218200 108550 109650 0 0 0 0 0 0 0 0 0 1383 2659 1443 6945;6946;6947;6948 7251;7252;7253;7254 7254 4 AIDALREFNEEGALSVLQQFK IFQTGLVAYVDLDERAIDALREFNEEGALS EFNEEGALSVLQQFKESDLSHVQNKSAFLC R A I F K E 3 1 1 1 0 2 3 1 0 1 3 1 0 2 0 1 0 0 0 1 0 0 21 1 2377.2278 O43390 O43390 64 84 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 3 0.040433 12.128 By MS/MS 2 0.89449 0.96819 12.504 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89449 0.96819 12.504 2 0 Median NaN NaN NaN 0 0 Median 9154900 4665300 4489700 0 0 0 0 0 0 0 0 0 0 0 0 9154900 4665300 4489700 0 0 0 1384 1568 1444 6949;6950 7255 7255 1 AIDDSSASISLAQLTK TYVISRTEPAMATTKAIDDSSASISLAQLT IDDSSASISLAQLTKTANLAEANASEEDKI K A I T K T 3 0 0 2 0 1 0 0 0 2 2 1 0 0 0 4 1 0 0 0 0 0 16 0 1618.8414 Q7Z6E9;A0A2R8Y880;H3BUN0;I3L3Y2 Q7Z6E9 101 116 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 7.7485E-05 75.695 By MS/MS 1 0.92023 1.0231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92023 1.0231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6619000 3009900 3609100 0 0 0 0 0 0 6619000 3009900 3609100 0 0 0 0 0 0 0 0 0 1385 3251 1445 6951 7256;7257 7256 2 AIDGLNLLPTLLQGR TTSLALAGLTPPSDRAIDGLNLLPTLLQGR AIDGLNLLPTLLQGRLMDRPIFYYRGDTLM R A I G R L 1 1 1 1 0 1 0 2 0 1 5 0 0 0 1 0 1 0 0 0 0 0 15 0 1592.925 P34059 P34059 362 376 GALNS N-acetylgalactosamine-6-sulfatase yes yes 2 0.00064249 47.559 By matching By MS/MS 1 1 1.2354 1.1323 62.355 2 Median 1.806 1.7597 NaN 1 0 Median 0.84503 0.72855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2477800 1284400 1193400 327810 111090 216720 2150000 1173300 976680 0 0 0 0 0 0 0 0 0 0 0 0 1386 2226 1446 6952;6953 7258 7258 1 AIDLFTDAIK KVAAIEALNDGELQKAIDLFTDAIKLNPRL GELQKAIDLFTDAIKLNPRLAILYAKRASV K A I I K L 2 0 0 2 0 0 0 0 0 2 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1105.6019 P50502;Q3KNR6;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2 P50502 133 142 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 2 0.00040842 76.679 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 1 3 1.2468 1.1756 29.302 12 Median 1.1521 1.0752 11.263 2 0 Median 1.4186 1.2091 15.478 3 0 Median 1.1096 1.0727 19.853 3 0 Median 1.2922 1.1565 NaN 1 0 Median 1.2677 1.2099 49.254 3 0 Median NaN NaN NaN 0 0 Median 114890000 50399000 64488000 63186000 28705000 34481000 29808000 11813000 17995000 13108000 6309700 6798600 4237200 1863000 2374200 4547700 1708900 2838800 0 0 0 1387 2415 1447 6954;6955;6956;6957;6958;6959;6960;6961;6962;6963;6964;6965 7259;7260;7261;7262;7263;7264 7260 6 AIDLLKEIYTNLGPR LWRVVIQSNDDIASRAIDLLKEIYTNLGPR AIDLLKEIYTNLGPRLQVNQVVIHEDFIQS R A I P R L 1 1 1 1 0 0 1 1 0 2 3 1 0 0 1 0 1 0 1 0 0 0 15 1 1714.9618 Q93008;O00507 Q93008 789 803 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2;3 0.0028298 48.004 By MS/MS By matching 3 1 0.92163 0.93648 21.957 4 Median 0.95774 0.96591 4.2775 3 0 Median 0.62409 0.61746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3717000 2073600 1643300 2654800 1476900 1177800 1062200 596690 465480 0 0 0 0 0 0 0 0 0 0 0 0 1388 3573 1448 6966;6967;6968;6969 7265;7266 7265 2 AIDLMNALMR NKKMKRNLRKILDSKAIDLMNALMRLNQIR ILDSKAIDLMNALMRLNQIRPGLQYKLLSQ K A I M R L 2 1 1 1 0 0 0 0 0 1 2 0 2 0 0 0 0 0 0 0 0 0 10 0 1146.5889 Q96SI9 Q96SI9 385 394 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.0041692 54.157 By MS/MS By MS/MS By matching By matching 1 1 2 2 1.0237 0.99574 123.96 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96127 1.0154 NaN 1 0 Median 0.067139 0.048488 NaN 1 1 Median 1.0237 1.0597 3.7575 2 0 Median 1.0799 0.95342 3.3748 2 0 Median 6331300 3169700 3161600 0 0 0 0 0 0 3538500 1721800 1816700 373270 348030 25247 2239700 1017600 1222100 179850 82263 97590 1389 3734 1449 6970;6971;6972;6973;6974;6975 7267;7268 7267 2 AIDSSNLKDDYSTAQR YFKINKLHLCKPLIRAIDSSNLKDDYSTAQ IDSSNLKDDYSTAQRVTYKYYVGRKAMFDS R A I Q R V 2 1 1 3 0 1 0 0 0 1 1 1 0 0 0 3 1 0 1 0 0 0 16 1 1782.8384 Q5JVF3 Q5JVF3 194 209 PCID2 PCI domain-containing protein 2 yes yes 2;3 3.095E-05 72.11 By matching By MS/MS By MS/MS 1 2 1 0.8662 0.88812 14.996 4 Median 0.80066 0.85681 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89945 1.0238 15.031 2 0 Median 0.92702 0.80756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28065000 14450000 13615000 1574400 726490 847900 0 0 0 22363000 11693000 10670000 4127400 2030700 2096800 0 0 0 0 0 0 1390 3057 1450 6976;6977;6978;6979 7269;7270;7271 7271 3 AIDTIYQTTDFSGIR GTREAVIAQISSHVKAIDTIYQTTDFSGIR AIDTIYQTTDFSGIRNISFMVKRIRINTTA K A I I R N 1 1 0 2 0 1 0 1 0 3 0 0 0 1 0 1 3 0 1 0 0 0 15 0 1699.8417 O14672 O14672 252 266 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 2 0.00096806 50.284 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0321 0.98085 14.156 3 Median NaN NaN NaN 0 0 Median 1.3439 1.1952 NaN 1 0 Median 0.93487 0.98085 NaN 1 0 Median 1.0321 0.90844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3275600 1661100 1614500 0 0 0 403970 185780 218190 2682200 1377300 1304900 189380 97966 91416 0 0 0 0 0 0 1391 1488 1451 6980;6981;6982;6983 7272;7273 7273 2 AIEALHGHELRPGR QFAFVHMRENAGALRAIEALHGHELRPGRA RAIEALHGHELRPGRALVVEMSRPRPLNTW R A I G R A 2 2 0 0 0 0 2 2 2 1 2 0 0 0 1 0 0 0 0 0 0 0 14 1 1554.8379 Q96PK6;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74 Q96PK6 51 64 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2;3 5.2282E-42 217.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 4 4 1.0463 0.96255 31.176 20 Median NaN NaN NaN 0 0 Median 1.1055 0.97086 48.552 4 0 Median 0.93088 0.95409 24.693 3 0 Median 1.1401 1.053 14.285 5 0 Median 0.77782 0.83744 41.335 4 0 Median 1.0463 0.93442 10.624 4 0 Median 129430000 69203000 60231000 0 0 0 11176000 5317500 5858700 12954000 6816600 6137600 9150100 4375900 4774200 89267000 49675000 39592000 6886200 3017300 3869000 1392 3712 1452 6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004 7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296 7278 22 AIEALKEFNEDGALAVLQQFK IYVAGLVAHSDLDERAIEALKEFNEDGALA EFNEDGALAVLQQFKDSDLSHVQNKSAFLC R A I F K D 4 0 1 1 0 2 3 1 0 1 3 2 0 2 0 0 0 0 0 1 0 0 21 1 2333.2267 O60506;F6UXX1 O60506 61 81 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.067749 7.8971 By matching By matching By MS/MS 1 1 1 1.3573 1.5208 28.934 3 Median NaN NaN NaN 0 0 Median 1.1007 1.0291 NaN 1 0 Median 1.5564 1.8108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3573 1.5208 NaN 1 0 Median NaN NaN NaN 0 0 Median 10680000 4940600 5739100 0 0 0 6483000 3285800 3197300 675810 252920 422890 0 0 0 3520800 1401900 2119000 0 0 0 1393 1619 1453 7005;7006;7007 7297 7297 1 AIEAVAISPWK EELAQLWAAEELDMKAIEAVAISPWKTYQL LDMKAIEAVAISPWKTYQLVYFLDKILQKS K A I W K T 3 0 0 0 0 0 1 0 0 2 0 1 0 0 1 1 0 1 0 1 0 0 11 0 1183.6601 Q9H4A4;A6NKB8 Q9H4A4 521 531 RNPEP Aminopeptidase B yes no 2 0.00014501 84.213 By MS/MS By matching 1 1 0.89582 0.79302 12.004 2 Median 0.77751 0.72848 NaN 1 0 Median 1.0321 0.86327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29401000 15046000 14355000 14451000 7722000 6729400 14949000 7323900 7625500 0 0 0 0 0 0 0 0 0 0 0 0 1394 3964 1454 7008;7009 7298;7299 7299 2 AIEDEGGNPDEIEITSEGNK DSSGNKSVLMERLKKAIEDEGGNPDEIEIT GGNPDEIEITSEGNKKTSKRSSKGRKPEEE K A I N K K 1 0 2 2 0 0 5 3 0 3 0 1 0 0 1 1 1 0 0 0 0 0 20 0 2115.9444 Q15424;K7ES42 Q15424 64 83 SAFB Scaffold attachment factor B1 yes no 2 2.8449E-08 68.83 By MS/MS By MS/MS 1 2 1.0213 0.86521 13.619 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0213 0.86521 NaN 1 0 Median 0.91673 0.95397 17.532 2 1 Median NaN NaN NaN 0 0 Median 12531000 7174800 5356600 0 0 0 0 0 0 0 0 0 1910600 922440 988190 10621000 6252400 4368400 0 0 0 1395 2951 1455 7010;7011;7012 7300;7301;7302 7300 3 AIEDEGGNPDEIEITSEGNKK DSSGNKSVLMERLKKAIEDEGGNPDEIEIT GNPDEIEITSEGNKKTSKRSSKGRKPEEEG K A I K K T 1 0 2 2 0 0 5 3 0 3 0 2 0 0 1 1 1 0 0 0 0 0 21 1 2244.0394 Q15424;K7ES42 Q15424 64 84 SAFB Scaffold attachment factor B1 yes no 2;3 1.1983E-66 220.85 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 8 4 0.84304 0.89365 12.431 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84458 0.98569 13.735 2 0 Median 1.0348 0.99821 7.8966 2 0 Median 0.7673 0.86152 8.7219 8 0 Median 0.95029 0.82736 16.466 4 0 Median 355900000 179300000 176600000 0 0 0 0 0 0 87136000 43504000 43632000 25034000 11685000 13349000 228850000 116560000 112280000 14881000 7549300 7331900 1396 2951 1456 7013;7014;7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025;7026;7027;7028;7029 7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321 7312 18 AIEDGNLEEMEEEVR DVDYSDALTEKQWLRAIEDGNLEEMEEEVR AIEDGNLEEMEEEVRLKKRKRRRNVDKDPA R A I V R L 1 1 1 1 0 0 6 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 15 0 1761.7727 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;A0A0U1RRJ4 P51531 1328 1342 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 1.7719E-09 113.83 By MS/MS 1 0.72592 0.8028 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72592 0.8028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3972200 2222300 1749900 0 0 0 0 0 0 3972200 2222300 1749900 0 0 0 0 0 0 0 0 0 1397 2433 1457 7030 7322 7322 1 AIEEFESSLK PSVESHLENHKNVHRAIEEFESSLKEAKIS KNVHRAIEEFESSLKEAKISEIQMTAPLKL R A I L K E 1 0 0 0 0 0 3 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1151.571 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 647 656 DST Dystonin yes no 2 0.0014621 65.305 By matching By MS/MS By matching 2 1 1 1.1155 1.079 118.29 4 Median NaN NaN NaN 0 0 Median 0.4828 0.43731 128.83 2 0 Median 0.99172 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.39 3.0214 NaN 1 0 Median 7912900 4413300 3499600 0 0 0 2494700 1806600 688070 4118500 2134300 1984200 0 0 0 0 0 0 1299600 472380 827270 1398 934 1458 7031;7032;7033;7034 7323 7323 1 AIEEGTLEEIEEEVR EVDYSDSLTEKQWLKAIEEGTLEEIEEEVR AIEEGTLEEIEEEVRQKKSSRKRKRDSDAG K A I V R Q 1 1 0 0 0 0 7 1 0 2 1 0 0 0 0 0 1 0 0 1 0 0 15 0 1744.8367 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28 P51532 1391 1405 SMARCA4 Transcription activator BRG1 yes no 2 4.6482E-09 128.67 By matching By MS/MS By matching By matching 1 1 1 1 0.96377 0.94543 16.893 4 Median NaN NaN NaN 0 0 Median 1.0329 0.9084 NaN 1 0 Median 0.89927 0.98397 NaN 1 0 Median 1.2337 1.0793 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8558 0.72681 NaN 1 0 Median 9728600 4599100 5129500 0 0 0 541560 282730 258830 8825500 4135900 4689700 247090 113200 133880 0 0 0 114410 67300 47110 1399 366 1459 7035;7036;7037;7038 7324;7325 7324 2 AIEEQMVAAK IIRKVVKLFNEVQEKAIEEQMVAAKDVVME EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL K A I A K D 3 0 0 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 10 0 1088.5536 Q9H0A0;A0A087WV29 Q9H0A0 913 922 NAT10 N-acetyltransferase 10 yes no 2 0.00064246 95.531 By MS/MS By MS/MS By MS/MS 1 2 1 1.2234 1.2735 24.232 3 Median NaN NaN NaN 0 0 Median 1.0195 0.86461 NaN 1 0 Median 1.2234 1.3506 NaN 1 1 Median 1.4839 1.2735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15562000 7208500 8353700 0 0 0 7691400 3752900 3938600 4554900 2154500 2400400 3315800 1301100 2014700 0 0 0 0 0 0 1400 3921 1460 7039;7040;7041;7042 7326;7327;7328;7329;7330 7328 5 AIEFLNNPPEEAPR GFAFVEFETKEQAAKAIEFLNNPPEEAPRK KAIEFLNNPPEEAPRKPGIFPKTVKNKPIP K A I P R K 2 1 2 0 0 0 3 0 0 1 1 0 0 1 3 0 0 0 0 0 0 0 14 0 1595.7944 Q4G0J3;D6RFF0 Q4G0J3 182 195 LARP7 La-related protein 7 yes no 2 1.0995E-05 103.22 By MS/MS 1 1.6044 1.6857 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6044 1.6857 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4597300 2041100 2556200 0 0 0 0 0 0 4597300 2041100 2556200 0 0 0 0 0 0 0 0 0 1401 3020 1461 7043 7331 7331 1 AIEINPDSAQPYK VKLQKPNAAIRDCDRAIEINPDSAQPYKWR DRAIEINPDSAQPYKWRGKAHRLLGHWEEA R A I Y K W 2 0 1 1 0 1 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 0 13 0 1444.7198 P50502;Q3KNR6;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2 P50502 174 186 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 2 1.1145E-06 113.93 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.76645 0.70125 28.874 5 Median 1.0041 0.92714 39.49 2 0 Median 0.77854 0.66453 21.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69919 0.66597 NaN 1 1 Median NaN NaN NaN 0 0 Median 122890000 64340000 58555000 96980000 50687000 46293000 19532000 10104000 9427600 0 0 0 0 0 0 6382300 3547700 2834500 0 0 0 1402 2415 1462 7044;7045;7046;7047;7048;7049 7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342 7335 11 AIEIYTDMGR KMAKNWSEAINCLMRAIEIYTDMGRFTIAA NCLMRAIEIYTDMGRFTIAAKHHISIAEIY R A I G R F 1 1 0 1 0 0 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 10 0 1167.5594 M0R0Y2;P54920;M0R2M1;M0R027;M0R058;M0R0I4 M0R0Y2 68 77 NAPA Alpha-soluble NSF attachment protein yes no 2 0.00037374 87.639 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1224 1.0281 19.729 5 Median 1.0421 0.97476 NaN 1 0 Median 1.4256 1.2083 22.842 2 0 Median 1.1224 1.1118 NaN 1 1 Median 0.98948 0.8297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46450000 22213000 24237000 24072000 12132000 11940000 16276000 7247700 9028700 5247200 2437600 2809600 853930 395600 458340 0 0 0 0 0 0 1403 1430 1463 7050;7051;7052;7053;7054 7343;7344;7345;7346;7347;7348;7349 7344 7 AIELATTLDESLTNR AAKMVYYLDPSSQKRAIELATTLDESLTNR AIELATTLDESLTNRNLQTCMEVLEALYDG R A I N R N 2 1 1 1 0 0 2 0 0 1 3 0 0 0 0 1 3 0 0 0 0 0 15 0 1645.8523 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 782 796 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.00015365 77.305 By MS/MS By MS/MS 1 1 0.73718 0.674 34.322 2 Median 0.54664 0.52876 NaN 1 1 Median 0.99412 0.85914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12746000 6554600 6191900 3841200 2343600 1497700 8905200 4211000 4694200 0 0 0 0 0 0 0 0 0 0 0 0 1404 213 1464 7055;7056 7350;7351;7352 7351 3 AIELFSVGQGPAK KMNSLPAERIQEIQKAIELFSVGQGPAKTM QKAIELFSVGQGPAKTMEEASKRSYQFWDT K A I A K T 2 0 0 0 0 1 1 2 0 1 1 1 0 1 1 1 0 0 0 1 0 0 13 0 1315.7136 P30419;K7EN82;B7Z8J4 P30419 95 107 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 2 9.6631E-07 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 1 0.94028 0.88711 21.358 8 Median 1.4584 1.3923 33.453 3 0 Plateau 0.94902 0.81992 NaN 1 0 Median 0.95123 0.98245 11.953 2 0 Median 1.1154 0.95653 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84457 0.73423 NaN 1 0 Median 74903000 37394000 37509000 45308000 22602000 22706000 1586700 934880 651810 20370000 10386000 9984500 7171200 3272100 3899100 0 0 0 467400 199790 267610 1405 2193 1465 7057;7058;7059;7060;7061;7062;7063;7064 7353;7354;7355;7356;7357;7358;7359;7360;7361 7361 9 AIELLEK AALGEPVRLERDICRAIELLEKLQRSGEVP RLERDICRAIELLEKLQRSGEVPPQKLQAL R A I E K L 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 814.48002 Q9NUP9;G3V1D4;O14910;H0YIA8;J3KN23 Q9NUP9 17 23 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 2 0.012264 78.616 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1685 1.0954 13.746 5 Median 1.0767 1.011 20.644 2 0 Median 1.3279 1.128 NaN 1 0 Median 1.1685 1.0954 NaN 1 0 Median 1.0812 0.89299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25324000 12034000 13290000 12134000 6117400 6016400 1783700 896890 886840 10340000 4560500 5779400 1066200 459170 607050 0 0 0 0 0 0 1406 4117 1466 7065;7066;7067;7068;7069 7362;7363;7364;7365;7366;7367;7368;7369 7365 8 AIELLQEFSDQHPENAAEIK LIQAAQLCREKQHTKAIELLQEFSDQHPEN QEFSDQHPENAAEIKLTMAQLKISQGNISK K A I I K L 3 0 1 1 0 2 4 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 20 0 2281.1226 O76094;D6RDY6 O76094 357 376 SRP72 Signal recognition particle subunit SRP72 yes no 3 0.057715 8.089 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.1547 0.99841 28.55 6 Median 1.0388 0.96399 NaN 1 0 Median 1.2175 1.0564 6.0846 2 0 Median 0.8537 0.87535 NaN 1 0 Median 1.134 0.98506 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2322 1.9347 NaN 1 0 Median 23670000 11852000 11817000 6234300 3123600 3110700 7240000 3401300 3838700 8619800 4581900 4038000 1440200 690830 749380 0 0 0 135270 54606 80669 1407 1721 1467 7070;7071;7072;7073;7074;7075 7370;7371 7370 2 AIEMELR FDFKIKFAETKAHAKAIEMELRQMEVAQAN AETKAHAKAIEMELRQMEVAQANRHMSLLT K A I L R Q 1 1 0 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 860.44259 E7EX90;Q14203;Q6AWB1 E7EX90 551 557 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.031276 49.358 By MS/MS By matching By matching 2 2 1 1.0242 1.0602 9.2406 5 Median 1.1121 1.0852 9.8271 2 0 Median NaN NaN NaN 0 0 Median 0.94719 1.0144 14.093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.283 1.0602 NaN 1 0 Median 9808900 4400700 5408200 6410500 2851700 3558800 0 0 0 3047900 1426000 1621800 0 0 0 0 0 0 350550 122970 227580 1408 906 1468 7076;7077;7078;7079;7080 7372 7372 1 AIEMLGGELGSK GTQTNMNVNEVISNRAIEMLGGELGSKIPV SNRAIEMLGGELGSKIPVHPNDHVNKSQSS R A I S K I 1 0 0 0 0 0 2 3 0 1 2 1 1 0 0 1 0 0 0 0 0 0 12 0 1203.6169 P07954 P07954 161 172 FH Fumarate hydratase, mitochondrial yes yes 2 4.28E-06 104.52 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0252 0.94894 21.202 5 Median 1.0252 0.94894 NaN 1 0 Median 1.1576 1.2355 15.068 2 0 Median 0.84171 0.83232 NaN 1 0 Median 0.9395 0.83789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24954000 11846000 13107000 13902000 6673900 7228200 6189100 2635600 3553500 3691900 1914000 1777900 1170800 623020 547830 0 0 0 0 0 0 1409 1896 1469 7081;7082;7083;7084;7085 7373;7374;7375;7376 7374 4 AIENELLAR LLIAQEKERNIFDQRAIENELLARNIHVIR NIFDQRAIENELLARNIHVIRRTFEDISEK R A I A R N 2 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1027.5662 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y7I7;A0A2R8Y6Q7 A0A2R8Y430 222 230 GSS Glutathione synthetase yes no 2 0.0012366 83.753 By MS/MS By MS/MS By matching By matching 1 1 1 2 1.1641 1.1708 56.352 5 Median 1.1569 1.0969 NaN 1 0 Median 1.6539 1.3896 NaN 1 0 Median 1.1641 1.1708 NaN 1 0 Median 0.71983 0.66227 89.493 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43386000 18404000 24982000 17826000 8130400 9695300 17557000 6205800 11351000 3255100 1486900 1768200 4748300 2580700 2167600 0 0 0 0 0 0 1410 358 1470 7086;7087;7088;7089;7090 7377;7378 7377 2 AIENLIGKPTEK SLVDLPSTNGQSPGKAIENLIGKPTEKSQT PGKAIENLIGKPTEKSQTPKDNSTASASLA K A I E K S 1 0 1 0 0 0 2 1 0 2 1 2 0 0 1 0 1 0 0 0 0 0 12 1 1311.7398 Q96T23 Q96T23 1379 1390 RSF1 Remodeling and spacing factor 1 yes yes 2 0.0037035 88.441 By MS/MS 1 1.4001 1.5178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4001 1.5178 NaN 1 1 Median NaN NaN NaN 0 0 Median 18420000 7831000 10589000 0 0 0 0 0 0 0 0 0 0 0 0 18420000 7831000 10589000 0 0 0 1411 3740 1471 7091 7379 7379 1 AIEPNDYTGK AKENGLPLEYQEKLKAIEPNDYTGKVSEEI QEKLKAIEPNDYTGKVSEEIEDIIKKGETQ K A I G K V 1 0 1 1 0 0 1 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 10 0 1106.5244 O75223;M0QZK8 O75223 162 171 GGCT Gamma-glutamylcyclotransferase yes no 2 0.0026987 59.35 By MS/MS By matching By matching 1 2 1 0.85077 0.78583 20.598 4 Median 0.75782 0.70557 NaN 1 0 Median 0.87416 0.75504 20.888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95513 1.0245 NaN 1 0 Median NaN NaN NaN 0 0 Median 11373000 6315600 5057500 7592700 4286000 3306600 1833100 965920 867150 0 0 0 0 0 0 1947400 1063700 883710 0 0 0 1412 1656 1472 7092;7093;7094;7095 7380 7380 1 AIEPPPLDAVIEAEHTLR IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH PPPLDAVIEAEHTLRELDALDANDELTPLG K A I L R E 3 1 0 1 0 0 3 0 1 2 2 0 0 0 3 0 1 0 0 1 0 0 18 0 1970.0473 Q08211 Q08211 820 837 DHX9 ATP-dependent RNA helicase A yes yes 2;3 2.461E-14 120.24 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 2 2 1 3 4 0.84324 0.76733 43.671 16 Median 0.8461 0.84526 7.6407 4 1 Median 0.90334 0.74893 5.6067 2 0 Median 0.43 0.48521 65.395 2 0 Median 0.98263 0.8401 NaN 1 0 Median 0.58834 0.60056 66.623 3 0 Plateau 0.99346 0.82854 25.801 4 0 Median 150480000 82673000 67804000 12382000 6432100 5950100 67213000 34668000 32545000 27778000 15924000 11854000 724420 336900 387520 29137000 18284000 10853000 13242000 7028100 6214300 1413 2736 1473 7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111 7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392;7393;7394;7395;7396;7397;7398;7399;7400;7401;7402;7403;7404 7388 24 AIEPQKEEADENYNSVNTR DEIKQLGREIRLQLKAIEPQKEEADENYNS QKEEADENYNSVNTRMRKTQHGVLSQQFVE K A I T R M 2 1 3 1 0 1 4 0 0 1 0 1 0 0 1 1 1 0 1 1 0 0 19 1 2206.0138 Q12846;C9JFM5 Q12846 103 121 STX4 Syntaxin-4 yes no 3 3.9872E-06 59.003 By MS/MS By MS/MS 1 1 0.20717 0.19579 44.073 2 Median 0.26652 0.26739 NaN 1 1 Median 0.16104 0.14337 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20846000 16369000 4476600 10147000 7863000 2284300 10699000 8506400 2192200 0 0 0 0 0 0 0 0 0 0 0 0 1414 2764 1474 7112;7113 7405;7406 7406 2 AIEQADLLQEEAETPR LGGEVQETSKKNVLKAIEQADLLQEEAETP IEQADLLQEEAETPRSVLEEIGLT______ K A I P R S 3 1 0 1 0 2 4 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 16 0 1811.8901 P56377 P56377 133 148 AP1S2 AP-1 complex subunit sigma-2 yes yes 2 0.0021366 37.426 By MS/MS By matching 1 1 0.821 0.75797 20.488 2 Median 0.6525 0.65574 NaN 1 0 Median 1.033 0.87613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2729900 1659600 1070300 2492400 1536300 956040 237550 123290 114260 0 0 0 0 0 0 0 0 0 0 0 0 1415 2510 1475 7114;7115 7407 7407 1 AIEQADLLQEEDESPR MGGDVQDTSKKSVLKAIEQADLLQEEDESP IEQADLLQEEDESPRSVLEEMGLA______ K A I P R S 2 1 0 2 0 2 4 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 16 0 1841.8643 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 133 148 AP1S1 AP-1 complex subunit sigma-1A yes no 2 1.4513E-10 157.52 By MS/MS By matching By MS/MS 2 2 1 0.9242 0.79463 14.659 5 Median 0.85752 0.84883 9.3307 2 0 Median 0.87744 0.73523 9.4739 2 0 Median 0.99531 1.0083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27432000 13428000 14005000 14064000 6619200 7444700 2487300 1323600 1163600 10881000 5484800 5396500 0 0 0 0 0 0 0 0 0 1416 403 1476 7116;7117;7118;7119;7120 7408;7409;7410;7411 7411 4 AIEQLKEQAATGK PEIDKKIKNLKKKLKAIEQLKEQAATGKQL LKAIEQLKEQAATGKQLEKNQLEKIQKETA K A I G K Q 3 0 0 0 0 2 2 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 13 1 1385.7514 Q9BY44;F8WAE5;H7C5R5 Q9BY44 546 558 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 3 0.014788 25.448 By MS/MS By matching 1 1 1.0351 0.97999 38.765 2 Median 1.3546 1.289 NaN 1 0 Median 0.79101 0.74503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3087100 1273000 1814100 2140400 865530 1274800 946720 407450 539270 0 0 0 0 0 0 0 0 0 0 0 0 1417 3886 1477 7121;7122 7412 7412 1 AIESMEQQLSELKK EVEKEKQELQDDKRRAIESMEQQLSELKKT RAIESMEQQLSELKKTLSSVQNEVQEALQR R A I K K T 1 0 0 0 0 2 3 0 0 1 2 2 1 0 0 2 0 0 0 0 0 0 14 1 1632.8393 P12270 P12270 1025 1038 TPR Nucleoprotein TPR yes yes 2;3 1.8824E-08 163.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 8 3 1 2 0.8718 0.97528 22.598 20 Median 0.83949 0.9037 8.9248 4 0 Median 1.24 1.1893 18.918 2 0 Median 0.85243 0.97528 12.417 8 2 Median 1.4843 1.3925 24.788 3 1 Plateau 0.82382 0.88338 NaN 1 0 Median 1.172 1.0667 68.312 2 0 Median 241560000 122750000 118810000 57572000 28416000 29156000 16651000 6794900 9856100 156480000 82303000 74179000 5216100 2354700 2861400 5056500 2606500 2449900 586910 279290 307620 1418 1978 1478;1479 7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142 7413;7414;7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427;7428;7429;7430;7431;7432;7433;7434;7435 7418 754 23 AIETFSGK GYAFVDCPDEHWAMKAIETFSGKVELQGKR DEHWAMKAIETFSGKVELQGKRLEIEHSVP K A I G K V 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 Q9NZI8 Q9NZI8 53 60 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0074447 67.032 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 4 1.1917 1.0805 39.704 7 Median 1.1254 1.0805 NaN 1 1 Median 1.2834 1.0849 NaN 1 0 Median 1.5577 1.6538 NaN 1 0 Median 1.1917 1.023 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7197 1.4266 56.587 3 0 Plateau 15986000 7002700 8983000 4134300 2024600 2109700 6049400 2525300 3524100 2188000 911900 1276100 434860 167570 267290 0 0 0 3179100 1373300 1805800 1419 4188 1480 7143;7144;7145;7146;7147;7148;7149;7150;7151 7436;7437;7438;7439;7440;7441;7442;7443;7444;7445 7438 10 AIETFSGKVELQGK GYAFVDCPDEHWAMKAIETFSGKVELQGKR KAIETFSGKVELQGKRLEIEHSVPKKQRSR K A I G K R 1 0 0 0 0 1 2 2 0 1 1 2 0 1 0 1 1 0 0 1 0 0 14 1 1505.809 Q9NZI8 Q9NZI8 53 66 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 4.7771E-05 152.7 By MS/MS By matching 2 4 1.3494 1.1894 53.917 6 Median 1.1703 1.0944 50.589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3753 1.1894 62.687 4 0 Median 42553000 20387000 22166000 37830000 18122000 19708000 0 0 0 0 0 0 0 0 0 0 0 0 4723400 2265500 2457900 1420 4188 1481 7152;7153;7154;7155;7156;7157 7446;7447;7448 7446 3 AIETLSGKVELHGK GYAFVDYPDQNWAIRAIETLSGKVELHGKI RAIETLSGKVELHGKIMEVDYSVSKKLRSR R A I G K I 1 0 0 0 0 0 2 2 1 1 2 2 0 0 0 1 1 0 0 1 0 0 14 1 1480.8249 F8W930;Q9Y6M1 F8W930 54 67 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 3 0.00077831 43.03 By matching By MS/MS 1 2 1.1015 0.98173 40.079 3 Median 0.53898 0.506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1263 1.0112 4.1759 2 0 Median 16013000 8585100 7427500 11044000 6283900 4759900 0 0 0 0 0 0 0 0 0 0 0 0 4968800 2301300 2667600 1421 1088 1482 7158;7159;7160 7449 7449 1 AIETTDIISR LGLKFNKIVHSSMTRAIETTDIISRHLPGV SSMTRAIETTDIISRHLPGVCKVSTDLLRE R A I S R H 1 1 0 1 0 0 1 0 0 3 0 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 Q96HS1;F5GXG4 Q96HS1 153 162 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.00034968 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1.5122 1.2573 18.333 7 Median 1.0501 0.98138 NaN 1 0 Median 1.639 1.3638 11.491 2 0 Median 1.0681 1.03 20.466 2 2 Median 1.5483 1.292 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6769 1.3891 NaN 1 0 Median 103850000 44876000 58974000 38926000 18111000 20815000 27649000 11031000 16618000 13518000 6466700 7051000 21310000 8193200 13117000 0 0 0 2446800 1074300 1372500 1422 3669 1483 7161;7162;7163;7164;7165;7166;7167;7168 7450;7451;7452;7453;7454;7455;7456;7457;7458;7459;7460 7450 11 AIEVGRENREDYR FEKGDYNKCRELCEKAIEVGRENREDYRQI EKAIEVGRENREDYRQIAKAYARIGNSYFK K A I Y R Q 1 3 1 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 13 2 1605.7859 P31948 P31948 285 297 STIP1 Stress-induced-phosphoprotein 1 yes yes 3;4 0.0010184 45.433 By MS/MS 2 1.1998 1.2988 7.2177 2 Median 1.1998 1.2988 7.2177 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17400000 7479700 9919900 17400000 7479700 9919900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1423 2212 1484 7169;7170 7461;7462;7463;7464 7462 4 AIEVLSDEHAR AEIYGVTHTRGIYQKAIEVLSDEHAREMCL IYQKAIEVLSDEHAREMCLRFADMECKLGE K A I A R E 2 1 0 1 0 0 2 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1238.6255 Q9HCS7 Q9HCS7 655 665 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2;3 0.0019658 58.676 By MS/MS By MS/MS 1 1 1.0519 1.1208 9.9886 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97489 1.0444 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.135 1.2028 NaN 1 0 Median NaN NaN NaN 0 0 Median 6516500 3287200 3229300 0 0 0 0 0 0 3892700 1915000 1977700 0 0 0 2623800 1372200 1251600 0 0 0 1424 4032 1485 7171;7172 7465;7466 7465 2 AIFAGYKR ______________________________ SGRLWSKAIFAGYKRGLRNQREHTALLKIE K A I K R G 2 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 1 924.51814 P18077;F8WBS5;F8WB72;C9K025 P18077 9 16 RPL35A 60S ribosomal protein L35a yes no 2 0.0013892 149.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 2 1.1844 1.0911 18.264 9 Median 1.098 1.0767 9.4934 3 0 Median 1.2211 1.0777 1.7454 2 0 Median 1.0917 1.1326 NaN 1 0 Median 1.3062 1.0622 NaN 1 0 Median 1.3226 1.5314 18.269 2 0 Median NaN NaN NaN 0 0 Median 305380000 140990000 164390000 92764000 44243000 48521000 184280000 83417000 100860000 10542000 5017600 5524500 3994700 1483500 2511200 13803000 6825500 6977900 0 0 0 1425 2054 1486 7173;7174;7175;7176;7177;7178;7179;7180;7181 7467;7468;7469;7470;7471;7472;7473;7474;7475;7476;7477;7478;7479;7480 7476 14 AIFEIVLNR ADMVYVTQSAGRLMRAIFEIVLNRGWAQLT AGRLMRAIFEIVLNRGWAQLTDKTLNLCKM R A I N R G 1 1 1 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 O75643;A0A494C1A5 O75643 1094 1102 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0027284 69.998 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1.0171 1.0683 16.004 9 Median 1.2422 1.226 1.1837 2 0 Median 1.2105 0.9656 13.007 3 0 Plateau 0.8795 0.95172 21.565 2 0 Median 1.2952 1.1384 NaN 1 0 Median 0.91683 0.95802 NaN 1 0 Median NaN NaN NaN 0 0 Median 17211000 8122000 9088800 5346900 2324400 3022500 3192600 1486800 1705800 6849000 3331300 3517700 634090 301180 332920 1188300 678340 509940 0 0 0 1426 1688 1487 7182;7183;7184;7185;7186;7187;7188;7189;7190 7481;7482;7483;7484;7485;7486 7482 6 AIFENTLSTYPK FAQLEFQLGDAERAKAIFENTLSTYPKRTD RAKAIFENTLSTYPKRTDVWSVYIDMTIKH K A I P K R 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 2 0 1 0 0 0 12 0 1382.7082 Q14690;A0A3B3IUD7 Q14690 1782 1793 PDCD11 Protein RRP5 homolog yes no 2 4.8065E-06 102.06 By MS/MS By MS/MS By matching 2 2 1 0.92296 0.96573 5.2071 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88633 0.96283 8.9229 2 0 Median NaN NaN NaN 0 0 Median 0.90441 0.94039 3.761 2 0 Median 1.1481 0.98424 NaN 1 0 Median 46092000 23593000 22498000 0 0 0 0 0 0 34819000 18128000 16691000 0 0 0 10178000 5015200 5163000 1094800 449890 644870 1427 448 1488 7191;7192;7193;7194;7195 7487;7488;7489;7490;7491;7492;7493 7490 7 AIFLADGK VAEREKAHEGARPMRAIFLADGKVFTTGFS EGARPMRAIFLADGKVFTTGFSRMSERQLA R A I G K V 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 833.4647 Q9BR76;A0A087WW53;F5H390 Q9BR76 226 233 CORO1B Coronin-1B;Coronin yes no 2 0.014311 60.76 By MS/MS By MS/MS By MS/MS 1 1 1 1.2158 1.0976 0.19767 2 Median 1.153 1.0961 NaN 1 0 Median 1.2821 1.0992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6198200 2783500 3414700 3810100 1649600 2160500 2388200 1133900 1254300 0 0 0 0 0 0 0 0 0 0 0 0 1428 3792 1489 7196;7197;7198 7494;7495;7496;7497 7494 4 AIFLADGNVFTTGFSR VAEKEKAHEGARPMRAIFLADGNVFTTGFS IFLADGNVFTTGFSRMSERQLALWNPKNMQ R A I S R M 2 1 1 1 0 0 0 2 0 1 1 0 0 3 0 1 2 0 0 1 0 0 16 0 1714.8679 Q9ULV4;B4E3S0 Q9ULV4 224 239 CORO1C Coronin-1C;Coronin yes no 2 2.7209E-10 151.79 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 1.1497 1.0756 9.9814 10 Median 1.1497 1.1454 14.211 4 0 Median 1.1487 0.98953 7.1135 2 0 Median 0.9953 1.0248 5.7129 2 0 Median 1.2525 1.0859 0.20633 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51502000 24324000 27178000 11605000 5130500 6474500 3852900 1717700 2135200 33022000 16140000 16882000 3022700 1335600 1687100 0 0 0 0 0 0 1429 4329 1490 7199;7200;7201;7202;7203;7204;7205;7206;7207;7208 7498;7499;7500;7501;7502;7503;7504;7505;7506;7507;7508;7509;7510;7511;7512;7513;7514 7505 17 AIFQEVHVQSLPQVDR LCVALPPGLAVSVLKAIFQEVHVQSLPQVD IFQEVHVQSLPQVDRHTVYNIITNFMRTRE K A I D R H 1 1 0 1 0 3 1 0 1 1 1 0 0 1 1 1 0 0 0 3 0 0 16 0 1864.9795 Q96T76;Q5T454;F8WCH8;B0QZ77 Q96T76 133 148 MMS19 MMS19 nucleotide excision repair protein homolog yes no 3 0.00017093 44.294 By MS/MS By matching 1 1 0.96501 0.89306 23.971 2 Median 0.77669 0.75382 NaN 1 0 Median 1.199 1.058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4384500 2173800 2210700 3458000 1695700 1762400 926480 478130 448350 0 0 0 0 0 0 0 0 0 0 0 0 1430 3742 1491 7209;7210 7515;7516 7516 2 AIFQQPPVGVR LILPVHSNIPMMDQKAIFQQPPVGVRKIVL MDQKAIFQQPPVGVRKIVLATNIAETSITI K A I V R K 1 1 0 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 11 0 1210.6822 H7BXY3;Q7L2E3 H7BXY3 687 697 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00015362 111.82 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 0.7576 0.73334 13.054 6 Median 0.63301 0.61089 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71272 0.78385 NaN 1 0 Median 0.94921 0.80833 NaN 1 0 Median 0.71257 0.74082 18.433 2 2 Median 0.84257 0.68609 NaN 1 0 Median 30386000 18423000 11963000 7809300 4636600 3172700 0 0 0 7076400 4729700 2346600 2049200 1071100 978130 11626000 7024400 4601600 1825100 960880 864180 1431 1244 1492 7211;7212;7213;7214;7215;7216 7517;7518;7519;7520;7521;7522 7522 6 AIFQTIQNR IDDEDNPVDEYQIFKAIFQTIQNRNPVWYQ EYQIFKAIFQTIQNRNPVWYQALTHGLNEE K A I N R N 1 1 1 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1089.5931 O95373 O95373 964 972 IPO7 Importin-7 yes yes 2 1.2479E-10 174.21 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2041 1.1744 17.485 6 Median 1.3109 1.2691 14.215 2 0 Median 1.455 1.2157 32.038 2 0 Median 1.0929 1.2016 NaN 1 0 Median 1.2132 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133380000 60407000 72972000 64041000 29006000 35035000 48111000 21257000 26853000 15246000 7444100 7801500 5981300 2699600 3281600 0 0 0 0 0 0 1432 1768 1493 7217;7218;7219;7220;7221;7222 7523;7524;7525;7526;7527;7528;7529;7530;7531 7524 9 AIFSGISQR GVWGQEGPELCGVDKAIFSGISQRCSHCTR LCGVDKAIFSGISQRCSHCTRLGASIPCRS K A I Q R C 1 1 0 0 0 1 0 1 0 2 0 0 0 1 0 2 0 0 0 0 0 0 9 0 977.52943 O14686 O14686 163 171 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.001468 81.191 By MS/MS By MS/MS 1 1 1.0615 1.0185 6.5528 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91938 0.97239 NaN 1 0 Median 1.2255 1.0668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9797500 4375300 5422300 0 0 0 0 0 0 8146000 3641700 4504400 1651500 733580 917910 0 0 0 0 0 0 1433 1490 1494 7223;7224 7532;7533 7532 2 AIFSHAAGDNSTLLSFK SMAAGLERNGRMRVKAIFSHAAGDNSTLLS FSHAAGDNSTLLSFKEGDLITLLVPEARDG K A I F K E 3 0 1 1 0 0 0 1 1 1 2 1 0 2 0 3 1 0 0 0 0 0 17 0 1777.8999 Q9UQB8;I3L4C2;I3L3C6;B4DWA1 Q9UQB8 381 397 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 3 0.00036693 37.583 By matching By MS/MS By matching By matching By matching 1 2 2 1 3 0.99192 0.81272 94.197 9 Median 1.0038 0.99994 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81984 0.86441 50.181 2 0 Median 0.94885 0.82694 19.554 2 0 Median 0.048603 0.053178 NaN 1 0 Median 0.99192 0.81272 12.78 3 0 Median 21428000 13118000 8310200 2120700 1069200 1051500 0 0 0 8030600 3758900 4271700 1341000 677520 663480 5574500 5271300 303140 4361400 2341000 2020400 1434 4361 1495 7225;7226;7227;7228;7229;7230;7231;7232;7233 7534;7535 7534 2 AIFTGHSAVVEDVAWHLLHESLFGSVADDQK DINAGPKEGKIVDAKAIFTGHSAVVEDVAW LLHESLFGSVADDQKLMIWDTRSNTTSKPS K A I Q K L 4 0 0 3 0 1 2 2 3 1 3 1 0 2 0 3 1 1 0 4 0 0 31 0 3377.6681 Q16576;E9PC52;Q5JP02;Q5JP01 Q16576 220 250 RBBP7 Histone-binding protein RBBP7 yes no 4 2.4716E-05 29.859 By MS/MS By matching 1 1 0.97882 0.90726 18.723 2 Median NaN NaN NaN 0 0 Median 1.2228 1.0357 NaN 1 0 Median 0.78355 0.79476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16220000 7054600 9165500 0 0 0 14547000 6173700 8373300 1673100 880900 792190 0 0 0 0 0 0 0 0 0 1435 2990 1496 7234;7235 7536 7536 1 AIFTGYYGK NGRWMLTLAKNMEVRAIFTGYYGKGKPVPT KNMEVRAIFTGYYGKGKPVPTQGSRKGGAL R A I G K G 1 0 0 0 0 0 0 2 0 1 0 1 0 1 0 0 1 0 2 0 0 0 9 0 1018.5124 P09543 P09543 392 400 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.05311 30.185 By matching By matching By MS/MS By matching 1 1 2 1 0.99572 1.0083 38.303 5 Median NaN NaN NaN 0 0 Median 0.90881 0.81918 NaN 1 0 Median 0.99572 1.0548 NaN 1 0 Median 1.3144 1.0835 10.173 2 0 Median 0.38252 0.44778 NaN 1 0 Median NaN NaN NaN 0 0 Median 14143000 7530900 6611700 0 0 0 1126000 471690 654270 4903800 2221800 2682100 1844800 828630 1016100 6268000 4008800 2259200 0 0 0 1436 1918 1497 7236;7237;7238;7239;7240 7537 7537 1 AIFTTGQGASAVGLTAYVQR AKSQFLKYIEKVSSRAIFTTGQGASAVGLT GQGASAVGLTAYVQRHPVSREWTLEAGALV R A I Q R H 4 1 0 0 0 2 0 3 0 1 1 0 0 1 0 1 3 0 1 2 0 0 20 0 2010.0534 P49736;H0Y8E6 P49736 543 562 MCM2 DNA replication licensing factor MCM2 yes no 2;3 4.9159E-19 123.02 By MS/MS By matching By MS/MS 3 1 3 0.94731 0.91688 7.7838 7 Median 0.95199 0.91688 1.1721 3 0 Plateau 1.1648 1.0169 NaN 1 0 Median 0.89884 0.98843 10.399 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32188000 16949000 15239000 21019000 11092000 9927300 1159300 528950 630390 10009000 5328200 4681200 0 0 0 0 0 0 0 0 0 1437 2393 1498 7241;7242;7243;7244;7245;7246;7247 7538;7539;7540;7541;7542;7543;7544;7545 7539 8 AIGAVPLIQGEYMIPCEK SLMVGPVDEVRELQKAIGAVPLIQGEYMIP AVPLIQGEYMIPCEKVSTLPAITLKLGGKG K A I E K V 2 0 0 0 1 1 2 2 0 3 1 1 1 0 2 0 0 0 1 1 0 0 18 0 1988.0111 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GU92;A0A1B0GU03;H7C469;H7C1V0 A0A1B0GW44 307 324 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.041854 21.631 By MS/MS By matching By matching 1 1 1 0.96089 0.99141 15.098 3 Median 1.0566 0.99141 NaN 1 0 Median 0.88051 0.76744 NaN 1 0 Median 0.96089 1.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5187000 2463600 2723300 3332400 1483700 1848800 1103900 583100 520800 750630 396880 353760 0 0 0 0 0 0 0 0 0 1438 324 1499 7248;7249;7250 7546 7546 1 AIGDVFQKPYVSGEADAASR HMDCWRVNGTLAVSRAIGDVFQKPYVSGEA FQKPYVSGEADAASRALTGSEDYLLLACDG R A I S R A 4 1 0 2 0 1 1 2 0 1 0 1 0 1 1 2 0 0 1 2 0 0 20 1 2080.0225 B5MCT7;P49593 B5MCT7 159 178 PPM1F Protein phosphatase 1F yes no 3 9.0974E-09 73.783 By MS/MS By matching By matching 1 1 1 0.95001 0.94404 15.599 3 Median 0.78036 0.77783 NaN 1 0 Median 1.0328 0.94404 NaN 1 0 Median 0.95001 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15790000 8462100 7328000 11530000 6298200 5232000 1601200 741600 859630 2658700 1422300 1236400 0 0 0 0 0 0 0 0 0 1439 619 1500 7251;7252;7253 7547;7548 7547 2 AIGFVVGQTDWEK RWADLEEKKDADRKRAIGFVVGQTDWEKIT KRAIGFVVGQTDWEKITDESGHLAEKALNR R A I E K I 1 0 0 1 0 1 1 2 0 1 0 1 0 1 0 0 1 1 0 2 0 0 13 0 1448.73 P49750;F8VU51 P49750 2115 2127 YLPM1 YLP motif-containing protein 1 yes no 2;3 0.0010336 60.434 By MS/MS By MS/MS 1 1 0.96401 0.97294 22.438 2 Median 0.90307 0.83019 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0291 1.1402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51339000 24334000 27005000 42969000 20397000 22572000 0 0 0 8370700 3937200 4433400 0 0 0 0 0 0 0 0 0 1440 2395 1501 7254;7255 7549;7550 7550 2 AIGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRAIGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A I I K Y 1 0 0 0 0 0 0 6 0 2 1 1 0 0 0 4 1 0 0 1 0 0 17 0 1446.7678 CON__P02538;P02538;CON__P48668;P48668 CON__P02538 534 550 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 8.1635E-40 162.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 4 9 5 2 0.049116 0.049837 183.72 17 Median 0.076329 0.075273 191.83 2 2 Median 0.034227 0.030132 NaN 1 1 Median 0.16335 0.17381 265.94 3 3 Median 0.062392 0.052728 169.26 7 7 Median 0.047316 0.049117 10.781 2 2 Median 0.009766 0.0081629 31.493 2 2 Median 277010000 254590000 22422000 90868000 88149000 2719100 29937000 29706000 231310 80493000 71896000 8596800 34013000 23945000 10068000 26268000 25574000 693470 15433000 15319000 113790 + 1441 741;766 1502 7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284 7551;7552;7553;7554;7555;7556;7557;7558;7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569;7570;7571;7572;7573;7574;7575;7576;7577;7578;7579 7579 29 AIGGIILTASHNPGGPNGDFGIK ILSTPAVSCIIRKIKAIGGIILTASHNPGG ASHNPGGPNGDFGIKFNISNGGPAPEAITD K A I I K F 2 0 2 1 0 0 0 6 1 4 1 1 0 1 2 1 1 0 0 0 0 0 23 0 2205.1542 P36871;A0A3B3ITK7 P36871 108 130 PGM1 Phosphoglucomutase-1 yes no 3 1.9656E-08 61.222 By MS/MS 2 0.64021 0.60021 4.3057 2 Median 0.64021 0.60021 4.3057 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26955000 16605000 10349000 26955000 16605000 10349000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1442 2262 1503 7285;7286 7580;7581 7580 2 AIGHVIEEGGVK SWNREEKIPKTVEIKAIGHVIEEGGVKMKL EIKAIGHVIEEGGVKMKLTVIDTPGFGDQI K A I V K M 1 0 0 0 0 0 2 3 1 2 0 1 0 0 0 0 0 0 0 2 0 0 12 0 1207.6561 B1AHR1;A0A2R8Y4H2;Q9UH03;B1AHR2 B1AHR1 43 54 SEPT3 Neuronal-specific septin-3 yes no 3 0.00029632 57.164 By MS/MS By MS/MS 1 2 2.0537 1.7342 39.622 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85939 0.91173 NaN 1 0 Median 2.1371 1.8047 5.6351 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8100800 3755700 4345100 0 0 0 0 0 0 4751000 2463100 2287900 3349800 1292600 2057200 0 0 0 0 0 0 1443 363 1504 7287;7288;7289 7582;7583;7584;7585 7583 4 AIGIEPSLATYHHIIR VFARSPALQVLREMKAIGIEPSLATYHHII IGIEPSLATYHHIIRLFDQPGDPLKRSSFI K A I I R L 2 1 0 0 0 0 1 1 2 4 1 0 0 0 1 1 1 0 1 0 0 0 16 0 1789.9839 Q96EY7 Q96EY7 362 377 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 3 0.0020232 30.133 By MS/MS By matching By matching 1 1 1 1.1644 1.0213 19.147 3 Median 1.0073 0.9642 NaN 1 0 Median 1.1644 1.0213 NaN 1 0 Median 1.3018 1.3774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9151400 3944800 5206600 5081900 2309400 2772500 683550 262760 420800 3385900 1372600 2013300 0 0 0 0 0 0 0 0 0 1444 3644 1505 7290;7291;7292 7586 7586 1 AIGIGAYLVR LAYNEIITISLVTCRAIGIGAYLVRLGQRT LVTCRAIGIGAYLVRLGQRTIQVENSHLIL R A I V R L 2 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1031.6128 Q13085;Q59FY4;O00763;F8W8T8;H0YGH5 Q13085 1824 1833 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.031929 33.55 By MS/MS By matching 2 1 1.3404 1.1579 20.467 3 Plateau 0.82665 0.82924 4.2412 2 0 Median 1.3868 1.1775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8490500 3964100 4526400 5274400 2773400 2501000 3216100 1190700 2025300 0 0 0 0 0 0 0 0 0 0 0 0 1445 2784 1506 7293;7294;7295 7587 7587 1 AIGISNFNHLQVEMILNKPGLK TWAAMEELVDEGLVKAIGISNFNHLQVEMI NHLQVEMILNKPGLKYKPAVNQIECHPYLT K A I L K Y 1 0 3 0 0 1 1 2 1 3 3 2 1 1 1 1 0 0 0 1 0 0 22 1 2435.3359 P15121;E9PCX2 P15121 156 177 AKR1B1 Aldose reductase yes no 4 0.02636 13.731 By MS/MS 2 1.0322 0.93344 10.816 2 Median NaN NaN NaN 0 0 Median 1.0322 0.93344 10.816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12848000 6358000 6490300 0 0 0 12848000 6358000 6490300 0 0 0 0 0 0 0 0 0 0 0 0 1446 2015 1507 7296;7297 7588;7589 7588 2 AIGNIELGIR LVVVGEIVTEEHLRRAIGNIELGIRSWDTN EHLRRAIGNIELGIRSWDTNLIECNLDQEL R A I I R S 1 1 1 0 0 0 1 2 0 3 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1054.6135 P46821;D6RA32;D6RGJ3;D6RCL2 P46821 55 64 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.00039861 88.37 By matching By matching By MS/MS By MS/MS By matching By matching 2 4 5 4 1 2 1.0248 0.92667 26.282 18 Median 0.84278 0.84414 20.07 2 0 Median 1.0769 0.93991 4.3213 4 0 Median 0.75343 0.82301 28.743 5 0 Median 1.4096 1.2193 4.5611 4 1 Median 0.65261 0.68371 NaN 1 0 Median 0.80868 0.68352 35.881 2 0 Median 57569000 27922000 29647000 2522400 1358000 1164500 2016500 975000 1041500 39721000 19712000 20009000 10231000 4094000 6137200 2105100 1271300 833790 972830 512020 460810 1447 2347 1508 7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315 7590;7591;7592;7593;7594;7595 7591 6 AIGNTELENKFAEGITK RRLEELLRQMCQAAKAIGNTELENKFAEGI GNTELENKFAEGITKIKRDIVFAASLYL__ K A I T K I 2 0 2 0 0 0 3 2 0 2 1 2 0 1 0 0 2 0 0 0 0 0 17 1 1833.9472 P42285 P42285 1013 1029 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 1.7661E-05 50.387 By MS/MS 1 1.149 1.3339 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.149 1.3339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16242000 7477200 8764300 0 0 0 0 0 0 16242000 7477200 8764300 0 0 0 0 0 0 0 0 0 1448 2309 1509 7316 7596;7597 7597 2 AIGPHDVLATLLNNLK AIRRATVNTFGYIAKAIGPHDVLATLLNNL IGPHDVLATLLNNLKVQERQNRVCTTVAIA K A I L K V 2 0 2 1 0 0 0 1 1 1 4 1 0 0 1 0 1 0 0 1 0 0 16 0 1687.9621 O75533;H7C341 O75533 1087 1102 SF3B1 Splicing factor 3B subunit 1 yes no 2;3 8.2758E-05 74.944 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 2 1 4 3 0.91094 0.89613 10.17 12 Median 0.93298 0.94492 NaN 1 0 Median 1.1741 1.0643 15.216 2 0 Median 0.8671 0.93573 4.2617 2 0 Median 1.0523 0.88446 NaN 1 0 Median 0.85164 0.86601 4.5915 4 0 Median 1.1025 0.95437 10.815 2 0 Median 23614000 11407000 12207000 941550 460510 481040 529520 258630 270890 11483000 5853900 5629600 1442200 96650 1345500 8994800 4636900 4357800 222090 100040 122050 1449 1683 1510 7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329 7598;7599;7600;7601;7602;7603;7604;7605 7602 8 AIGQTELNASNPEEVLQLAAQR HHKRGETDKRQIAIKAIGQTELNASNPEEV NASNPEEVLQLAAQRRKKKFLQAMAKLYF_ K A I Q R R 4 1 2 0 0 3 3 1 0 1 3 0 0 0 1 1 1 0 0 1 0 0 22 0 2351.2081 Q75QN2;H0YBS1 Q75QN2 960 981 INTS8 Integrator complex subunit 8 yes no 2 0.0094602 25.322 By MS/MS 1 0.66027 0.70206 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66027 0.70206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 881050 503460 377590 0 0 0 0 0 0 881050 503460 377590 0 0 0 0 0 0 0 0 0 1450 1170 1511 7330 7606 7606 1 AIGSASEGAQSSLQEVYHK FHMDPSGTFVQCDARAIGSASEGAQSSLQE ASEGAQSSLQEVYHKSMTLKEAIKSSLIIL R A I H K S 3 0 0 0 0 2 2 2 1 1 1 1 0 0 0 4 0 0 1 1 0 0 19 0 1960.949 P28066 P28066 169 187 PSMA5 Proteasome subunit alpha type-5 yes yes 2;3 3.2293E-38 200.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 1 2 2 1.2108 1.0349 27.215 15 Median 1.0909 0.99445 3.1885 3 0 Median 1.1811 0.87524 41.254 5 0 Plateau 1.2145 1.1446 0.25159 2 0 Median 1.2475 1.0349 NaN 1 0 Median 1.0694 1.1172 16.47 2 0 Median 1.3079 1.0806 0 2 0 Median 1034000000 475780000 558200000 820080000 382060000 438030000 127040000 56425000 70613000 39927000 17947000 21980000 9687300 4282900 5404300 22499000 9509100 12990000 14741000 5560500 9180300 1451 2159 1512 7331;7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342;7343;7344;7345 7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630 7611 24 AIGSKDDGKLDLSVVENGGLK PLYENLRDILLQGLKAIGSKDDGKLDLSVV DGKLDLSVVENGGLKAKTITKKRKKEIEES K A I L K A 1 0 1 3 0 0 1 4 0 1 3 3 0 0 0 2 0 0 0 2 0 0 21 2 2114.1219 Q99986;H0YJ50;H0YJJ9 Q99986 330 350 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 8.8243E-05 36.679 By MS/MS By matching 1 1 0.78323 0.80145 18.667 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95143 0.91453 NaN 1 0 Median 0.64477 0.70235 NaN 1 0 Median NaN NaN NaN 0 0 Median 4872200 2168700 2703500 0 0 0 0 0 0 0 0 0 3555000 1503700 2051200 1317200 664950 652280 0 0 0 1452 3775 1513 7346;7347 7631;7632 7631 2 AIGTDEDLAHSSIR SACTSASLEPSYVLRAIGTDEDLAHSSIRF RAIGTDEDLAHSSIRFGIGRFTTEEEVDYT R A I I R F 2 1 0 2 0 0 1 1 1 2 1 0 0 0 0 2 1 0 0 0 0 0 14 0 1483.7267 Q9Y697;H7C0I5;H0YGN5 Q9Y697 394 407 NFS1 Cysteine desulfurase, mitochondrial yes no 2;3 6.2255E-07 119.76 By MS/MS By MS/MS By matching 1 3 1 1.1903 1.1364 36.544 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1484 1.1364 NaN 1 0 Median 1.4883 1.281 18.613 3 2 Median 0.56605 0.5728 NaN 1 0 Median NaN NaN NaN 0 0 Median 73163000 35049000 38114000 0 0 0 0 0 0 9014300 4959900 4054400 46890000 19578000 27313000 17258000 10511000 6747400 0 0 0 1453 4484 1514 7348;7349;7350;7351;7352 7633;7634;7635;7636;7637;7638 7635 6 AIGVGLGFELQR DMFYRNWALKESFIKAIGVGLGFELQRLEF FIKAIGVGLGFELQRLEFDLSPLNLDIGQV K A I Q R L 1 1 0 0 0 1 1 3 0 1 2 0 0 1 0 0 0 0 0 1 0 0 12 0 1258.7034 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 186 197 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 2 0.030808 28.013 By MS/MS 1 1.3183 1.0979 NaN 1 Median NaN NaN NaN 0 0 Median 1.3183 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5618100 2504700 3113400 0 0 0 5618100 2504700 3113400 0 0 0 0 0 0 0 0 0 0 0 0 1454 4085 1515 7353 7639 7639 1 AIGVKPPR KEMVELPLRHPALFKAIGVKPPRGILLYGP RHPALFKAIGVKPPRGILLYGPPGTGKTLI K A I P R G 1 1 0 0 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 8 1 836.52322 P55072 P55072 232 239 VCP Transitional endoplasmic reticulum ATPase yes yes 2 6.0589E-05 117.7 By MS/MS By MS/MS 1 1 2.3656 2.3877 119.66 2 Median 0.98823 1.0245 NaN 1 1 Median 5.6627 5.5647 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76459000 8815000 67644000 1992200 735780 1256400 74467000 8079200 66388000 0 0 0 0 0 0 0 0 0 0 0 0 1455 2494 1516 7354;7355 7640;7641;7642 7641 3 AIGVLTSGGDAQGMNAAVR GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRMGIYVGAKVYF K A I V R A 4 1 1 1 0 1 0 4 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1786.8996 Q01813;P17858 Q01813 26 44 PFKP;PFKL ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type no no 2;3 6.1302E-69 193.23 By MS/MS By MS/MS By MS/MS By matching 9 7 3 1 1.1552 1.062 18.978 19 Median 1.1424 1.0839 13.114 8 1 Median 1.1688 1.0128 25.971 7 0 Median 0.88765 0.90272 23.856 3 0 Median 1.2483 1.0582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 167860000 78304000 89556000 126120000 58960000 67163000 23454000 9789700 13665000 17869000 9376900 8492100 413460 177330 236130 0 0 0 0 0 0 1456 2692;2047 1517;1518 7356;7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372;7373;7374;7375 7643;7644;7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655 7643 812 13 AIGYLIPLMDAEYANYYTR GIRQHRGKGLAAFLKAIGYLIPLMDAEYAN LIPLMDAEYANYYTREVMLILIREFQSPDE K A I T R E 3 1 1 1 0 0 1 1 0 2 2 0 1 0 1 0 1 0 4 0 0 0 19 0 2236.0874 O75533 O75533 749 767 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 3.1903E-06 53.528 By matching By matching By MS/MS By MS/MS 1 2 2 1 0.87627 0.94818 24.573 6 Median 0.95942 0.97049 NaN 1 0 Median 0.78575 0.73252 46.315 2 0 Median 0.87627 0.94818 1.9853 2 0 Median NaN NaN NaN 0 0 Median 0.86379 0.90086 NaN 1 0 Median NaN NaN NaN 0 0 Median 9105400 4589300 4516200 885070 431780 453290 415830 197040 218790 2536700 1296400 1240300 0 0 0 5267800 2664000 2603800 0 0 0 1457 1683 1519 7376;7377;7378;7379;7380;7381 7656;7657;7658;7659;7660 7656 5 AIHKTSSQSAPACPREQEQ VGGGDPGEEAAEEHKAIHKTSSQSAPACPR TSSQSAPACPREQEQ_______________ K A I E Q - 3 1 0 0 1 3 2 0 1 1 0 1 0 0 2 3 1 0 0 0 0 0 19 2 2124.0018 P0DPI3;A0A0U1RR11;A0A0U1RRI6 P0DPI3 254 272 yes no 3 0.066728 8.9317 By MS/MS 1 0.84738 0.88358 NaN 1 Median 0.84738 0.88358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18958000 9488500 9469500 18958000 9488500 9469500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1458 306 1520 7382 7661 7661 1 AIHLPAETMR YLNQTVTEFKQLISKAIHLPAETMRIVLER QLISKAIHLPAETMRIVLERCYNDLRLLSV K A I M R I 2 1 0 0 0 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 10 0 1137.5965 Q96K76 Q96K76 752 761 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 0.059781 42.109 By MS/MS 1 0.035773 0.030759 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.035773 0.030759 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1038700 990200 48494 0 0 0 0 0 0 0 0 0 1038700 990200 48494 0 0 0 0 0 0 1459 3690 1521 7383 7662 7662 1 AIHNKVNIVPVIAK PFGHGLKPLDVAFMKAIHNKVNIVPVIAKA KAIHNKVNIVPVIAKADTLTLKERERLKKR K A I A K A 2 0 2 0 0 0 0 0 1 3 0 2 0 0 1 0 0 0 0 3 0 0 14 1 1514.9297 Q15019;B5MCX3;H7C2Y0;C9J2Q4;H7C310 Q15019 170 183 SEPT2 Septin-2 yes no 3 0.011084 25.718 By MS/MS By MS/MS 1 1 0.77812 0.7665 2.1376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7141 0.77817 NaN 1 0 Median 0.84788 0.755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6079800 3049300 3030500 0 0 0 0 0 0 4162700 1960000 2202700 1917100 1089300 827790 0 0 0 0 0 0 1460 2914 1522 7384;7385 7663;7664 7663 2 AIHPGAGYEGISEYK VTMSVHDEEGKLLEKAIHPGAGYEGISEYK AIHPGAGYEGISEYKSVVYYQVKQPCWYET K A I Y K S 2 0 0 0 0 0 2 3 1 2 0 1 0 0 1 1 0 0 2 0 0 0 15 0 1590.7678 Q9H7D0;H0Y7N4 Q9H7D0 483 497 DOCK5 Dedicator of cytokinesis protein 5 yes no 3 0.003616 27.335 By MS/MS By matching 1 1 0.87955 0.8847 28.426 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6496 0.72361 NaN 1 0 Median 1.1909 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6285800 3586500 2699300 0 0 0 0 0 0 4793400 2913000 1880400 1492400 673450 818910 0 0 0 0 0 0 1461 3981 1523 7386;7387 7665 7665 1 AIHSWLTR IDEELLGDGHSYSPRAIHSWLTRAMYSRRS GHSYSPRAIHSWLTRAMYSRRSKMNPLWNT R A I T R A 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 1 0 0 0 0 8 0 982.53485 P28070 P28070 132 139 PSMB4 Proteasome subunit beta type-4 yes yes 2 0.0021595 114.78 By MS/MS By MS/MS By MS/MS 2 2 1 0.94889 0.80293 43.229 2 Median NaN NaN NaN 0 0 Median 0.94889 0.80293 43.229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13423000 6010600 7412700 0 0 0 13423000 6010600 7412700 0 0 0 0 0 0 0 0 0 0 0 0 1462 2160 1524 7388;7389;7390;7391;7392 7666;7667;7668;7669;7670 7666 5 AIIASNIMYIVGQYPR DLLGLCEQKRGKDNKAIIASNIMYIVGQYP IIASNIMYIVGQYPRFLRAHWKFLKTVVNK K A I P R F 2 1 1 0 0 1 0 1 0 4 0 0 1 0 1 1 0 0 2 1 0 0 16 0 1807.9655 O14980 O14980 538 553 XPO1 Exportin-1 yes yes 2;3 3.0583E-06 77.379 By MS/MS By matching 3 1 0.91429 0.86845 4.326 4 Median 0.88977 0.87067 4.5399 3 1 Median 0.95496 0.85259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5674000 2987900 2686100 5600700 2947100 2653600 73261 40814 32447 0 0 0 0 0 0 0 0 0 0 0 0 1463 1510 1525 7393;7394;7395;7396 7671;7672 7672 2 AIIDEFEQK SVVGKLRRGAKPEGKAIIDEFEQKLRACHT AKPEGKAIIDEFEQKLRACHTRGLDGIKEL K A I Q K L 1 0 0 1 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 Q15021 Q15021 1280 1288 NCAPD2 Condensin complex subunit 1 yes yes 2 0.0056451 70.919 By MS/MS 1 2.422 2.3351 NaN 1 Median 2.422 2.3351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16500000 4859000 11641000 16500000 4859000 11641000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1464 2915 1526 7397 7673 7673 1 AIIEEGDKEIATK HPSMAIIKGAGLVMKAIIEEGDKEIATKMQ MKAIIEEGDKEIATKMQELALSEGALPRHL K A I T K M 2 0 0 1 0 0 3 1 0 3 0 2 0 0 0 0 1 0 0 0 0 0 13 1 1415.7508 O75165;A0A3B3IRM0 O75165 587 599 DNAJC13 DnaJ homolog subfamily C member 13 yes no 2;3 0.00096223 72.006 By matching By MS/MS 1 2 0.66383 0.64312 27.091 3 Median 0.54896 0.5593 NaN 1 0 Median 0.80201 0.77908 27.121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5632400 3066500 2565900 2035700 1173200 862520 3596700 1893300 1703400 0 0 0 0 0 0 0 0 0 0 0 0 1465 1653 1527 7398;7399;7400 7674;7675 7675 2 AIIEEYLHLNDMK LKAALSEEELEKKSKAIIEEYLHLNDMKEA SKAIIEEYLHLNDMKEAVQCVQELASPSLL K A I M K E 1 0 1 1 0 0 2 0 1 2 2 1 1 0 0 0 0 0 1 0 0 0 13 0 1587.7967 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1085 1097 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 1.4533E-06 115.57 By MS/MS By matching By matching 2 4 1 1.0261 1.1003 21.217 7 Median 1.0832 1.0449 7.4786 2 0 Median 1.1507 1.0119 29.525 4 0 Median 0.99176 1.1003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29553000 12089000 17464000 20076000 7468800 12607000 8084300 3964900 4119300 1392800 655050 737760 0 0 0 0 0 0 0 0 0 1466 894 1528 7401;7402;7403;7404;7405;7406;7407 7676;7677;7678 7678 3 AIIENLIQK LDTDFTNNASQPETKAIIENLIQKQDFSLS SQPETKAIIENLIQKQDFSLSVALDGGSML K A I Q K Q 1 0 1 0 0 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1040.623 O75976;J3QRJ9 O75976 1078 1086 CPD Carboxypeptidase D yes no 2 0.00094954 88.942 By MS/MS By MS/MS 1 3 1.1425 1.0206 28.477 4 Median 0.81259 0.78311 NaN 1 0 Median 1.1809 1.0463 24.49 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30925000 14580000 16345000 17437000 8649900 8787300 13488000 5930400 7557400 0 0 0 0 0 0 0 0 0 0 0 0 1467 1714 1529 7408;7409;7410;7411 7679;7680;7681 7680 3 AIIESDQEQGR PDRRHELYKAHEWARAIIESDQEQGRKLRS EWARAIIESDQEQGRKLRSTMLELEKQGLE R A I G R K 1 1 0 1 0 2 2 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 11 0 1244.5997 Q12765 Q12765 356 366 SCRN1 Secernin-1 yes yes 2 0.00013373 94.309 By MS/MS By MS/MS By matching 1 1 1 1.0943 1.0594 8.6063 3 Median 1.0943 1.0594 NaN 1 0 Median 1.3079 1.1149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87608 0.94258 NaN 1 0 Median NaN NaN NaN 0 0 Median 12308000 5219900 7088100 7403000 3106200 4296800 3627300 1546900 2080400 0 0 0 0 0 0 1277700 566760 710930 0 0 0 1468 2755 1530 7412;7413;7414 7682;7683;7684;7685 7683 4 AIIIFVPVPQLK NITAAKEIEVGGGRKAIIIFVPVPQLKSFQ GRKAIIIFVPVPQLKSFQKIQVRLVRELEK K A I L K S 1 0 0 0 0 1 0 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1336.8482 P62081;B5MCP9 P62081 59 70 RPS7 40S ribosomal protein S7 yes no 2 3.6505E-06 107.47 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 6 0.92857 0.79331 13.801 13 Median 0.86882 0.8624 NaN 1 0 Median 0.82064 0.70294 9.1088 2 0 Median 0.71297 0.7019 17.313 2 0 Median 1.0289 0.85174 NaN 1 0 Median 0.63062 0.64689 NaN 1 0 Median 1.0096 0.83162 11.276 6 0 Median 71032000 36296000 34736000 297050 157880 139170 11548000 5943200 5604600 2704700 1521700 1183000 1855100 883590 971500 4292500 2731500 1560900 50335000 25058000 25277000 1469 2568 1531 7415;7416;7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427 7686;7687;7688;7689;7690;7691;7692;7693 7693 8 AIIKPQYVDQIPK ELQNYFTKILEDDLKAIIKPQYVDQIPKAA LKAIIKPQYVDQIPKAAKGTVGSILDRKDE K A I P K A 1 0 0 1 0 2 0 0 0 3 0 2 0 0 2 0 0 0 1 1 0 0 13 1 1511.8712 P61221;D6R9I9;D6RGF4;H0Y990 P61221 166 178 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2;3 0.0012604 43.308 By MS/MS By matching By MS/MS By MS/MS 5 3 2 2 0.84411 0.83651 13.581 12 Median 0.81508 0.81587 8.0087 5 0 Median 0.81131 0.76072 12.036 3 0 Median 0.94797 1.0282 10.732 2 0 Median 0.87575 0.80862 14.65 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116080000 62578000 53501000 83589000 45269000 38320000 17389000 9352500 8036300 12602000 6629700 5972700 2498100 1326800 1171300 0 0 0 0 0 0 1470 2550 1532 7428;7429;7430;7431;7432;7433;7434;7435;7436;7437;7438;7439 7694;7695;7696;7697;7698;7699;7700;7701 7695 8 AIIKPVIVDKDVK KSQRPFSPREALRSRAIIKPVIVDKDVKKI SRAIIKPVIVDKDVKKIMGGSGTETTLEKQ R A I V K K 1 0 0 2 0 0 0 0 0 3 0 3 0 0 1 0 0 0 0 3 0 0 13 2 1436.8967 Q86V48 Q86V48 754 766 LUZP1 Leucine zipper protein 1 yes yes 3 0.0009232 46.481 By MS/MS 1 0.79996 0.81922 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79996 0.81922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2284900 1098200 1186700 0 0 0 0 0 0 0 0 0 2284900 1098200 1186700 0 0 0 0 0 0 1471 3285 1533 7440 7702 7702 1 AIILAAAPGEK VLQAGQYGVAQTRRRAIILAAAPGEKLPLF TRRRAIILAAAPGEKLPLFPEPLHVFAPRA R A I E K L 4 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1052.623 P26358;K7ENW7 P26358 1313 1323 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00015042 89.08 By MS/MS By MS/MS By matching 3 5 2 0.90324 0.80245 12.713 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74329 0.81747 19.305 3 0 Median 0.90591 0.7877 12.656 5 0 Median NaN NaN NaN 0 0 Median 0.96351 0.8018 7.4026 2 0 Median 61506000 34153000 27352000 0 0 0 0 0 0 36926000 21246000 15680000 23049000 12030000 11019000 0 0 0 1530300 877840 652420 1472 2142 1534 7441;7442;7443;7444;7445;7446;7447;7448;7449;7450 7703;7704;7705;7706 7703 4 AIILFNPDAK MRDMRMDKTELGCLRAIILFNPDAKGLSNP LGCLRAIILFNPDAKGLSNPSEVEVLREKV R A I A K G 2 0 1 1 0 0 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 10 0 1100.623 P28702;A0A0G2JKR7 P28702 443 452 RXRB Retinoic acid receptor RXR-beta yes no 2 0.00083236 70.919 By MS/MS By matching 2 2 0.91115 0.86846 10.34 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88253 0.9141 7.3092 2 0 Median 0.93102 0.80657 10.52 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8710300 4449000 4261300 0 0 0 0 0 0 8004100 4139100 3865000 706230 309880 396350 0 0 0 0 0 0 1473 280 1535 7451;7452;7453;7454 7707 7707 1 AIILNTPHNPLGK LDPQELESKFNSKTKAIILNTPHNPLGKVY TKAIILNTPHNPLGKVYNREELQVIADLCI K A I G K V 1 0 2 0 0 0 0 1 1 2 2 1 0 0 2 0 1 0 0 0 0 0 13 0 1386.7983 Q6YP21;A0A0A0MRN7 Q6YP21 210 222 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 2 2.1053E-06 109.66 By MS/MS 1 4.7635 4.3719 NaN 1 Median 4.7635 4.3719 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58094000 4488500 53606000 58094000 4488500 53606000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1474 3196 1536 7455 7708 7708 1 AIINSTITPNMTFTK STRNVYRIISLDGSKAIINSTITPNMTFTK AIINSTITPNMTFTKTSQKFGQWADSRANT K A I T K T 1 0 2 0 0 0 0 0 0 3 0 1 1 1 1 1 4 0 0 0 0 0 15 0 1650.8651 Q86YM7 Q86YM7 55 69 HOMER1 Homer protein homolog 1 yes yes 2 0.00032492 51.927 By matching By MS/MS 1 1 0.78703 0.85896 43.036 2 Median 0.56203 0.6336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1021 1.1645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6820100 3655600 3164500 1616900 1072200 544660 0 0 0 5203300 2583400 2619900 0 0 0 0 0 0 0 0 0 1475 3307 1537 7456;7457 7709;7710 7709 2 AIIRENEFSFEDNAIR PDMYVVTYVGDKDSRAIIRENEFSFEDNAI IIRENEFSFEDNAIRGGKKASRMKKEASVK R A I I R G 2 2 2 1 0 0 3 0 0 3 0 0 0 2 0 1 0 0 0 0 0 0 16 1 1922.9486 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 814 829 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.5883E-07 95.57 By MS/MS By MS/MS 2 1 1.0293 1.2758 26.021 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0293 1.2758 26.021 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18514000 8611900 9901700 0 0 0 0 0 0 18514000 8611900 9901700 0 0 0 0 0 0 0 0 0 1476 246 1538 7458;7459;7460 7711;7712;7713;7714 7712 4 AIITALGVER TASEDDNFGTAQSNKAIITALGVERRNRVL AQSNKAIITALGVERRNRVLAGLYMGRSDT K A I E R R 2 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1041.6182 Q92616 Q92616 1872 1881 GCN1L1 Translational activator GCN1 yes yes 2 2.9822E-05 143.28 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 2 1.2351 1.0699 26.67 8 Median 1.0845 1.0178 NaN 1 0 Median 1.1825 0.98 10.253 2 0 Median 1.1874 1.3131 NaN 1 0 Median 1.4337 1.2562 NaN 1 0 Median 2.0376 2.1337 NaN 1 0 Median 1.2656 1.0486 4.9939 2 0 Median 47811000 21459000 26351000 17554000 7784000 9769800 21990000 10099000 11891000 3976900 1835500 2141400 527390 268060 259330 2026800 776350 1250400 1735700 696870 1038800 1477 3544 1539 7461;7462;7463;7464;7465;7466;7467;7468 7715;7716;7717;7718;7719;7720;7721;7722 7716 8 AIITDSVK WKIHEACMLALGSVKAIITDSVKNGRIHFD LALGSVKAIITDSVKNGRIHFDMHGFLTNV K A I V K N 1 0 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 8 0 845.48583 Q96P70 Q96P70 459 466 IPO9 Importin-9 yes yes 2 0.017569 48.561 By MS/MS 1 1.3114 1.133 NaN 1 Median NaN NaN NaN 0 0 Median 1.3114 1.133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3558600 1807100 1751600 0 0 0 3558600 1807100 1751600 0 0 0 0 0 0 0 0 0 0 0 0 1478 3711 1540 7469 7723 7723 1 AIKEKEYEIER CEKENLGWQKLESEKAIKEKEYEIERLRVL ESEKAIKEKEYEIERLRVLLQEEGTRKREY K A I E R L 1 1 0 0 0 0 4 0 0 2 0 2 0 0 0 0 0 0 1 0 0 0 11 2 1406.7405 P15924 P15924 1163 1173 DSP Desmoplakin yes yes 3 0.0060409 35.645 By matching By MS/MS By MS/MS 1 1 1 0.82347 0.7904 30.893 3 Median 1.1563 1.2211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57148 0.67183 NaN 1 0 Median 0.82347 0.7904 NaN 1 0 Median 2848100 1322400 1525800 1164500 479020 685500 0 0 0 0 0 0 0 0 0 1066800 536440 530400 616760 306890 309860 1479 2021 1541 7470;7471;7472 7724;7725 7724 1 AIKELGDHVTNLR LCDFIETHYLNEQVKAIKELGDHVTNLRKM VKAIKELGDHVTNLRKMGAPESGLAEYLFD K A I L R K 1 1 1 1 0 0 1 1 1 1 2 1 0 0 0 0 1 0 0 1 0 0 13 1 1464.8049 P02794;G3V192;G3V1D1 P02794 145 157 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 3 0.002014 38.189 By MS/MS 1 1.2387 1.3015 NaN 1 Median 1.2387 1.3015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3819800 1820100 1999700 3819800 1820100 1999700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1480 1838 1542 7473 7726 7726 1 AIKNDSVVAGGGAIEMELSK ETERSLHDAIMIVRRAIKNDSVVAGGGAIE SVVAGGGAIEMELSKYLRDYSRTIPGKQQL R A I S K Y 3 0 1 1 0 0 2 3 0 2 1 2 1 0 0 2 0 0 0 2 0 0 20 1 1988.0248 Q99832 Q99832 399 418 CCT7 T-complex protein 1 subunit eta yes yes 3 9.1426E-09 67.866 By MS/MS 1 1.1473 1.0676 NaN 1 Median 1.1473 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36181000 16555000 19625000 36181000 16555000 19625000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1481 3771 1543 7474 7727 7727 1 AIKVEQATKPSFER KDAARDMNGKSLDGKAIKVEQATKPSFERG KAIKVEQATKPSFERGRHGPPPPPRSRGPP K A I E R G 2 1 0 0 0 1 2 0 0 1 0 2 0 1 1 1 1 0 0 1 0 0 14 2 1602.873 Q96E39;A0A1B0GUK8 Q96E39 78 91 RBMXL1 RNA binding motif protein, X-linked-like-1 yes no 3;4 4.5754E-06 86.467 By matching By MS/MS By MS/MS By MS/MS 1 1 5 2 0.90359 1.0336 29.527 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69046 0.79318 NaN 1 0 Median 1.7982 1.9631 NaN 1 0 Median 0.85206 0.97469 24.428 5 0 Median 1.2402 1.1552 2.5954 2 0 Median 46258000 24334000 21924000 0 0 0 0 0 0 2538800 1581100 957720 2749600 1164700 1584900 33078000 18054000 15024000 7891800 3534800 4357100 1482 3632 1544 7475;7476;7477;7478;7479;7480;7481;7482;7483 7728;7729;7730;7731;7732;7733;7734;7735;7736 7729 9 AIKVEQATKPSFESGR KDAARDMNGKSLDGKAIKVEQATKPSFESG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K A I G R R 2 1 0 0 0 1 2 1 0 1 0 2 0 1 1 2 1 0 0 1 0 0 16 2 1746.9264 P38159;H3BT71;H0Y6E7 P38159 78 93 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2;3;4 8.3296E-102 268.08 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 7 15 5 0.93953 1.0266 15.341 35 Median 0.93953 1.0498 4.5413 3 0 Median 1.3444 1.2663 9.1643 2 0 Median 1.0841 1.2138 23.073 3 0 Median 1.1946 1.195 15.66 7 1 Median 0.81395 0.95665 12.797 15 0 Median 1.1501 1.0412 14.489 5 0 Median 1517700000 769670000 747980000 6315500 2802300 3513200 2335100 1105400 1229800 10199000 5635100 4564200 123590000 55816000 67770000 1090100000 576270000 513870000 285080000 128040000 157030000 1483 2273 1545 7484;7485;7486;7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501;7502;7503;7504;7505;7506;7507;7508;7509;7510;7511;7512;7513;7514;7515;7516;7517;7518 7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747;7748;7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774;7775;7776;7777;7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788;7789;7790;7791 7756 55 AILCAIQNLEER GFVEDFSEQMEIAIRAILCAIQNLEERKNE AIRAILCAIQNLEERKNEKAEENTDQASPQ R A I E R K 2 1 1 0 1 1 2 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1428.7395 Q9NU22 Q9NU22 4514 4525 MDN1 Midasin yes yes 2 5.4737E-06 98.943 By MS/MS 1 1.0356 1.0936 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0356 1.0936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9856200 4889100 4967100 0 0 0 0 0 0 9856200 4889100 4967100 0 0 0 0 0 0 0 0 0 1484 4112 1546 7519 7792 7792 1 AILCLLLGGVER KSLAPSIHGHDYVKKAILCLLLGGVERDLE VKKAILCLLLGGVERDLENGSHIRGDINIL K A I E R D 1 1 0 0 1 0 1 2 0 1 4 0 0 0 0 0 0 0 0 1 0 0 12 0 1312.7537 P25205;J3KQ69;A0A499FHX9 P25205 316 327 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0046806 63.283 By MS/MS 2 1.0393 0.89957 3.6483 2 Median NaN NaN NaN 0 0 Median 1.0393 0.89957 3.6483 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10235000 4258200 5977300 0 0 0 10235000 4258200 5977300 0 0 0 0 0 0 0 0 0 0 0 0 1485 2129 1547 7520;7521 7793;7794 7793 2 AILEQQVLSEELTTKK KATSSETKESTDIEKAILEQQVLSEELTTK ILEQQVLSEELTTKKEQVSEAIKTSQIFLA K A I K K E 1 0 0 0 0 2 3 0 0 1 3 2 0 0 0 1 2 0 0 1 0 0 16 1 1829.0146 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 1458 1473 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.6554E-05 76.85 By MS/MS By MS/MS 1 1 0.88882 0.98756 4.1719 2 Median 0.88066 0.95885 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89705 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31866000 15780000 16086000 21565000 10800000 10765000 0 0 0 10302000 4980400 5321300 0 0 0 0 0 0 0 0 0 1486 1220 1548 7522;7523 7795;7796;7797 7795 3 AILFLPMSAK TGQYKLGSKTGPGQKAILFLPMSAKS____ GPGQKAILFLPMSAKS______________ K A I A K S 2 0 0 0 0 0 0 0 0 1 2 1 1 1 1 1 0 0 0 0 0 0 10 0 1089.6256 A0A0A0MQV6;P09038 A0A0A0MQV6 278 287 FGF2 Fibroblast growth factor 2 yes no 2 0.0087058 50.607 By MS/MS By matching 2 1 1.1717 1.1229 8.9669 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1692 1.1219 0.12613 2 0 Median 1.1717 0.9605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5284400 2473400 2811100 0 0 0 0 0 0 4949700 2319800 2629900 334750 153560 181190 0 0 0 0 0 0 1487 148 1549;1550 7524;7525;7526 7798;7799 7798 74 2 AILGSVER SHDGDDKKRPVIVHRAILGSVERMIAILTE RPVIVHRAILGSVERMIAILTENYGGKWPF R A I E R M 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 843.48142 P26639;B7ZLP8;A2RTX5 P26639 592 599 TARS;TARSL2 Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic yes no 2 0.0028985 131.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1 1.1584 1.0418 24.031 10 Median 1.0639 1.0377 4.7685 2 0 Median 1.1674 1.0106 21.401 4 1 Median 1.2329 1.2864 1.9848 2 0 Median 1.2142 1.0465 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59683 0.61312 NaN 1 0 Median 83583000 37455000 46128000 23355000 10785000 12570000 28313000 12447000 15866000 21376000 9413100 11963000 10001000 4457800 5543000 0 0 0 538500 352580 185910 1488 2147 1551 7527;7528;7529;7530;7531;7532;7533;7534;7535;7536 7800;7801;7802;7803;7804;7805;7806 7803 7 AILGSYDSELTPAEYSPQLTR QKRVLLLTKERDGMRAILGSYDSELTPAEY DSELTPAEYSPQLTRRMREAEDMVQKVHSH R A I T R R 2 1 0 1 0 1 2 1 0 1 3 0 0 0 2 3 2 0 2 0 0 0 21 0 2310.138 Q9Y6D9;C9J9H5;C9JX80 Q9Y6D9 413 433 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.038563 20.106 By MS/MS 1 0.55313 0.54749 NaN 1 Median 0.55313 0.54749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1873400 1094900 778520 1873400 1094900 778520 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1489 4490 1552 7537 7807 7807 1 AILIFNNHGKPR ______________________________ MIKAILIFNNHGKPRLSKFYQPYSEDTQQQ K A I P R L 1 1 2 0 0 0 0 1 1 2 1 1 0 1 1 0 0 0 0 0 0 0 12 1 1378.7834 Q92572;F5H459 Q92572 4 15 AP3S1 AP-3 complex subunit sigma-1 yes no 2;3 2.2725E-06 120.09 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 0.90135 0.88956 64.137 5 Median 0.84378 0.83476 8.9912 2 0 Median 1.0519 0.92816 NaN 1 1 Median 0.18644 0.21036 NaN 1 0 Median 1.0283 0.91027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22950000 12749000 10201000 14323000 7911900 6411400 3194900 1519700 1675300 2289800 1821300 468450 3142300 1496100 1646300 0 0 0 0 0 0 1490 3537 1553 7538;7539;7540;7541;7542 7808;7809;7810;7811;7812 7808 5 AILILDNDGDRLFAK ______________________________ AILILDNDGDRLFAKYYDDTYPSVKEQKAF K A I A K Y 2 1 1 3 0 0 0 1 0 2 3 1 0 1 0 0 0 0 0 0 0 0 15 1 1672.9148 F8VVA7;P61923;F8VXB1;F8VUC5;F8W156;F8W651;F8VYZ4;F8VXR1 F8VVA7 15 29 COPZ1 Coatomer subunit zeta-1 yes no 2;3 0.0012744 69.979 By MS/MS 2 0.93117 0.92355 18.22 2 Median 0.93117 0.92355 18.22 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7969500 4010500 3959000 7969500 4010500 3959000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1491 1067 1554 7543;7544 7813;7814 7814 2 AILLPDLSEPNNEPLFSPASEVPR SFTKSSRSSRTRSSKAILLPDLSEPNNEPL PNNEPLFSPASEVPRKAKAKKIEVPAQLKE K A I P R K 2 1 2 1 0 0 3 0 0 1 4 0 0 1 5 3 0 0 0 1 0 0 24 0 2604.3435 Q8WYP5;H7C4S1 Q8WYP5 2104 2127 AHCTF1 Protein ELYS yes no 3 0.00083918 26.417 By MS/MS 3 0.42731 0.45058 6.5125 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42731 0.45058 6.5125 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4537000 2878200 1658800 0 0 0 0 0 0 4537000 2878200 1658800 0 0 0 0 0 0 0 0 0 1492 3524 1555 7545;7546;7547 7815;7816 7816 2 AILNGIDSINK DLEKKQQLLRAATGKAILNGIDSINKVLDH ATGKAILNGIDSINKVLDHFRRKGINQHVQ K A I N K V 1 0 2 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1156.6452 Q9UQE7 Q9UQE7 504 514 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00013635 87.308 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.2615 1.0846 21.548 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1329 1.1779 24.163 2 0 Median 1.2615 1.0846 NaN 1 0 Median 0.99943 1.0206 NaN 1 0 Median 1.8912 1.6204 NaN 1 1 Median 45185000 21253000 23932000 0 0 0 0 0 0 26497000 12552000 13944000 3674100 1751800 1922300 12170000 6026900 6143200 2843900 921900 1922000 1493 4362 1556 7548;7549;7550;7551;7552;7553 7817;7818;7819;7820;7821;7822;7823 7822 7 AILQATLR IIEYLKQQVSLLKEKAILQATLREEKKLRV VSLLKEKAILQATLREEKKLRVENAKLKKE K A I L R E 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 884.54435 Q12904;D6R937 Q12904 36 43 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 0.0044009 81.784 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2108 1.0606 20.992 5 Median 1.07 1.0606 NaN 1 0 Median 1.2108 1.0557 NaN 1 0 Median 1.2552 1.2366 NaN 1 0 Median 0.85291 0.75706 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4659 1.2923 NaN 1 0 Median 25670000 11315000 14355000 6074800 2758200 3316600 15008000 6460900 8547300 2985900 1303300 1682500 1412500 721800 690680 0 0 0 188840 70710 118130 1494 2768 1557 7554;7555;7556;7557;7558 7824;7825;7826 7824 3 AILQATLREEK IIEYLKQQVSLLKEKAILQATLREEKKLRV LKEKAILQATLREEKKLRVENAKLKKEIEE K A I E K K 2 1 0 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 1 1270.7245 Q12904;D6R937 Q12904 36 46 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2;3 5.3992E-05 152.97 By MS/MS By MS/MS By matching By MS/MS 4 3 2 2 1.2452 1.2078 18.588 11 Median 1.1891 1.2742 13.718 4 0 Median 1.3589 1.137 5.7931 3 0 Plateau 1.3625 1.4856 8.0114 2 0 Median 1.0262 0.89532 3.1762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69158000 29703000 39454000 43192000 18397000 24796000 13133000 5560500 7572300 6413800 2828900 3585000 6418600 2917100 3501500 0 0 0 0 0 0 1495 2768 1558 7559;7560;7561;7562;7563;7564;7565;7566;7567;7568;7569 7827;7828;7829;7830;7831;7832;7833;7834 7828 8 AILQATLREEKK IIEYLKQQVSLLKEKAILQATLREEKKLRV KEKAILQATLREEKKLRVENAKLKKEIEEL K A I K K L 2 1 0 0 0 1 2 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 12 2 1398.8195 Q12904;D6R937 Q12904 36 47 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 3 0.022186 24.254 By matching By MS/MS 2 1 0.87799 0.90637 2.7901 3 Median 0.876 0.91738 1.7063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87799 0.87826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6182600 2992000 3190600 5116500 2541100 2575400 0 0 0 0 0 0 1066100 450900 615210 0 0 0 0 0 0 1496 2768 1559 7570;7571;7572 7835 7835 1 AILQNHTDFKDK QNMMQDYVRTGTYQRAILQNHTDFKDKIVL YQRAILQNHTDFKDKIVLDVGCGSGILSFF R A I D K I 1 0 1 2 0 1 0 0 1 1 1 2 0 1 0 0 1 0 0 0 0 0 12 1 1428.7361 Q86X55;K7EQA8 Q86X55 175 186 CARM1 Histone-arginine methyltransferase CARM1 yes no 3 0.00043201 54.023 By MS/MS By MS/MS 1 1 1.0145 0.95838 8.9138 2 Median 1.0712 1.0207 NaN 1 0 Median 0.96074 0.89984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5346300 2230100 3116300 1859700 893120 966580 3486600 1337000 2149700 0 0 0 0 0 0 0 0 0 0 0 0 1497 3299 1560 7573;7574 7836;7837;7838;7839 7839 4 AILSNEATK ISSEDERNAIFQLEKAILSNEATKSDLQMA IFQLEKAILSNEATKSDLQMAVLSFEKDDD K A I T K S 2 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 945.51311 A0AVT1 A0AVT1 831 839 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2 0.0018938 76.478 By MS/MS By matching 1 1 1.1958 1.1284 11.443 2 Median NaN NaN NaN 0 0 Median 1.2218 1.0407 NaN 1 0 Median 1.1703 1.2235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6238900 2908800 3330200 0 0 0 5569300 2550400 3018900 669620 358370 311240 0 0 0 0 0 0 0 0 0 1498 489 1561 7575;7576 7840;7841 7841 2 AILSTKPPGTFLLR NEGYIMGFISKERERAILSTKPPGTFLLRF RAILSTKPPGTFLLRFSESSKEGGVTFTWV R A I L R F 1 1 0 0 0 0 0 1 0 1 3 1 0 1 2 1 2 0 0 0 0 0 14 1 1512.9028 P40763;G8JLH9 P40763 596 609 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription yes no 3 0.041889 16.725 By MS/MS By matching By matching 1 1 1 0.90877 0.9288 8.491 3 Plateau 0.90877 0.9288 NaN 1 0 Median 0.91339 0.91511 NaN 1 0 Median 0.69708 0.79629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4281400 2216000 2065400 2065000 1097600 967390 1430300 694730 735540 786090 423650 362440 0 0 0 0 0 0 0 0 0 1499 2289 1562 7577;7578;7579 7842 7842 1 AILTMTQLYK LNMLLRDENVNVVKKAILTMTQLYKVALQW NVVKKAILTMTQLYKVALQWMVKSRVISEL K A I Y K V 1 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 2 0 1 0 0 0 10 0 1180.6526 Q92797;A0A087WUE9;M0R3C7;M0QXP5 Q92797 129 138 SYMPK Symplekin yes no 2 0.00038325 92.439 By MS/MS 1 0.94217 1.0058 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94217 1.0058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13866000 7127100 6739000 0 0 0 0 0 0 13866000 7127100 6739000 0 0 0 0 0 0 0 0 0 1500 3558 1563 7580 7843;7844 7843 2 AILVDLEPGTMDSVR SVYYNEATGGKYVPRAILVDLEPGTMDSVR AILVDLEPGTMDSVRSGPFGQIFRPDNFVF R A I V R S 1 1 0 2 0 0 1 1 0 1 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1614.8287 A0A0B4J269;Q13509;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q5JP53;P07437;Q13885;Q9BVA1 Q5JP53 45 59 TUBB3;TUBB;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 1.3777E-26 166.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 14 9 5 9 14 1.0486 0.91943 39.131 66 Median 0.93781 0.86942 51.588 16 3 Median 1.0632 0.90126 17.877 14 2 Median 0.94917 0.93016 19.532 9 2 Median 1.1505 0.98604 18.232 5 0 Median 1.3922 1.4253 80.094 8 0 Median 1.0925 0.87331 11.46 14 0 Median 1899100000 955180000 943870000 1022700000 525150000 497540000 212050000 108530000 103520000 453640000 227350000 226290000 79429000 37359000 42070000 56905000 22747000 34157000 74339000 34046000 40293000 1501 1887;3849;2844;216 1564;1565 7581;7582;7583;7584;7585;7586;7587;7588;7589;7590;7591;7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642;7643;7644;7645;7646;7647 7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857;7858;7859;7860;7861;7862;7863;7864;7865;7866;7867;7868;7869;7870;7871;7872;7873;7874;7875;7876;7877;7878;7879;7880;7881;7882;7883;7884;7885;7886;7887;7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916 7852 86 72 AILVVFANK KSELVAMLEEEELRKAILVVFANKQDMEQA EEELRKAILVVFANKQDMEQAMTSSEMANS K A I N K Q 2 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 2 0 0 9 0 973.59605 F8VYN9;P40616;B4DZG7 F8VYN9 119 127 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.0092157 49.358 By MS/MS By MS/MS By matching 1 2 1 1.2485 1.2325 10.269 4 Linear 1.2677 1.1994 NaN 1 0 Median 1.1927 1.0511 13.258 2 0 Median 1.2296 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4893000 2071900 2821100 2936700 1173100 1763600 953700 422000 531700 1002600 476810 525820 0 0 0 0 0 0 0 0 0 1502 1075 1566 7648;7649;7650;7651 7917;7918 7917 2 AILYLNTGYQR YLNETQQLTAELKSKAILYLNTGYQRQLLY LKSKAILYLNTGYQRQLLYKHFDGSYSTFG K A I Q R Q 1 1 1 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 2 0 0 0 11 0 1310.6983 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1008 1018 yes yes 2 3.0262E-05 122.52 By MS/MS By MS/MS 4 2 0.24892 0.23261 43.08 5 Median 0.23001 0.21986 44.584 4 4 Median 0.46086 0.38971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81047000 62733000 18314000 76715000 59595000 17120000 4332200 3138700 1193500 0 0 0 0 0 0 0 0 0 0 0 0 + 1503 734 1567 7652;7653;7654;7655;7656;7657 7919;7920;7921;7922;7923;7924 7919 6 AIMAQLPQEQK VQTEDDQLIAGQSARAIMAQLPQEQKAKIA QSARAIMAQLPQEQKAKIAEQVASFQEEKS R A I Q K A 2 0 0 0 0 3 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 11 0 1255.6595 P35221;G3XAM7 P35221 671 681 CTNNA1 Catenin alpha-1 yes no 2 0.00029824 72.547 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.82548 0.80275 60.765 3 Plateau 0.82548 0.80275 NaN 1 0 Median 0.72486 0.63391 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.29268 0.25405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12948000 7739300 5208400 6531800 3777500 2754300 4706000 2667600 2038500 0 0 0 1709800 1294200 415590 0 0 0 0 0 0 1504 2232 1568 7658;7659;7660;7661 7925;7926;7927;7928 7927 4 AIMEMPSFYSHGLPR PDDLNSIRAAPGEFRAIMEMPSFYSHGLPR AIMEMPSFYSHGLPRCSPYKKLTECQLKNP R A I P R C 1 1 0 0 0 0 1 1 1 1 1 0 2 1 2 2 0 0 1 0 0 0 15 0 1734.8222 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 475 489 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 3.7218E-05 79.646 By matching By MS/MS By matching By MS/MS By matching 1 4 1 9 2 0.85276 0.8757 25.105 17 Median NaN NaN NaN 0 0 Median 0.97005 0.85127 NaN 1 0 Median 0.83744 0.89563 18.025 4 1 Median 0.99295 0.8757 NaN 1 0 Median 0.81096 0.82654 19.719 9 1 Median 0.72159 0.61842 62.353 2 0 Median 70607000 37723000 32884000 0 0 0 401900 193120 208780 25331000 13268000 12063000 200700 121980 78728 43899000 23689000 20210000 773640 450510 323130 1505 2498 1569;1570;1571 7662;7663;7664;7665;7666;7667;7668;7669;7670;7671;7672;7673;7674;7675;7676;7677;7678 7929;7930;7931;7932;7933;7934;7935;7936;7937;7938;7939;7940;7941 7940 1183;1184 13 AIMGSGKEDYTGK SGDVNLAESDLAYTRAIMGSGKEDYTGKDV TRAIMGSGKEDYTGKDVLILGGGDGGILCE R A I G K D 1 0 0 1 0 0 1 3 0 1 0 2 1 0 0 1 1 0 1 0 0 0 13 1 1355.6391 P52788;H7C2R7 P52788 180 192 SMS Spermine synthase yes no 2;3 0.010654 45.137 By MS/MS By MS/MS By matching 2 2 1 1.2502 1.1339 14.078 5 Median 1.123 1.0509 5.9494 2 0 Median 1.3975 1.2685 15.864 2 0 Median NaN NaN NaN 0 0 Median 1.5136 1.3249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6037400 2044800 3992600 1463100 552880 910240 2690400 978520 1711900 0 0 0 1883900 513350 1370500 0 0 0 0 0 0 1506 2459 1572 7679;7680;7681;7682;7683 7942;7943;7944 7943 3 AIMSDKFVTSTSDHFVEGQTVAAK VFIQFPSGLSGLAPKAIMSDKFVTSTSDHF STSDHFVEGQTVAAKVTNVDEEKQRMLLSL K A I A K V 3 0 0 2 0 1 1 1 1 1 0 2 1 2 0 3 3 0 0 3 0 0 24 1 2568.253 Q14690;A0A3B3IUD7 Q14690 759 782 PDCD11 Protein RRP5 homolog yes no 3;4 6.9879E-12 54.235 By MS/MS 2 1.0238 1.1875 7.6974 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0238 1.1875 7.6974 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42971000 20393000 22578000 0 0 0 0 0 0 42971000 20393000 22578000 0 0 0 0 0 0 0 0 0 1507 448 1573 7684;7685 7945;7946;7947 7945 3 AIMTYVSSFYHAFSGAQK LDAEDIVNTARPDEKAIMTYVSSFYHAFSG TYVSSFYHAFSGAQKAETAANRICKVLAVN K A I Q K A 3 0 0 0 0 1 0 1 1 1 0 1 1 2 0 3 1 0 2 1 0 0 18 0 2006.956 O43707;P12814;H9KV75;G3V2W4;G3V2N5 O43707 256 273 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 3 1.3851E-06 65.107 By MS/MS By matching By matching By matching 3 2 2 1 1.1983 1.1809 16.842 8 Median 1.2184 1.2271 9.1222 3 0 Median 1.0997 0.94524 1.7296 2 0 Median 1.0902 1.1542 14.27 2 0 Median NaN NaN NaN 0 0 Median 1.4574 1.4957 NaN 1 0 Median NaN NaN NaN 0 0 Median 27484000 12416000 15067000 21358000 9584300 11774000 1918400 766770 1151700 3307900 1650800 1657100 0 0 0 898940 414500 484440 0 0 0 1508 1585;1983 1574 7686;7687;7688;7689;7690;7691;7692;7693 7948;7949;7950 7949 3 AIMYEETTYSK NVGSPLKSQNHPDSRAIMYEETTYSKKKII PDSRAIMYEETTYSKKKIIDFLSALEGFKV R A I S K K 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 1 2 0 2 0 0 0 11 0 1334.6064 P52701;A0A494C0M1;A0A087WWJ1 P52701 842 852 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00015157 99.653 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1 1.4135 1.2706 59.597 7 Median 1.3194 1.2702 NaN 1 0 Median 7.0387 6.2343 NaN 1 1 Median 1.4965 1.5962 NaN 1 0 Median 1.4013 1.2706 26.557 3 0 Median NaN NaN NaN 0 0 Median 1.4135 1.2154 NaN 1 0 Median 64313000 21565000 42748000 19765000 9639400 10126000 15864000 1221100 14643000 17589000 6534200 11055000 10425000 3885400 6539700 0 0 0 669700 284820 384870 1509 2453 1575;1576 7694;7695;7696;7697;7698;7699;7700;7701 7951;7952;7953;7954;7955;7956;7957;7958 7952 1150 8 AINAALAQR ITPQLALQVLLQFDKAINAALAQRVRNRVN LLQFDKAINAALAQRVRNRVNFRILAPILQ K A I Q R V 4 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 926.52976 A8MYR4;H0YK39;P52657 A8MYR4 43 51 GTF2A2 Transcription initiation factor IIA subunit 2 yes no 2 0.0014144 81.784 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.172 0.99802 12.094 7 Median 1.0282 0.99802 NaN 1 0 Median 1.2056 1.0785 18.248 2 0 Median 0.8628 0.87559 NaN 1 1 Median 1.3068 1.0934 6.8459 2 0 Median 0.90867 0.92196 NaN 1 0 Median NaN NaN NaN 0 0 Median 29285000 14072000 15214000 17558000 8554100 9004300 8339500 3750000 4589500 1578200 932420 645800 1151900 508130 643820 657240 327100 330140 0 0 0 1510 549 1577 7702;7703;7704;7705;7706;7707;7708 7959;7960;7961;7962;7963;7964 7959 6 AINCATSGVVGLVNCLR GILADEDSSRPVWLKAINCATSGVVGLVNC NCATSGVVGLVNCLRREPGGNRLRCVLLSN K A I L R R 2 1 2 0 2 0 0 2 0 1 2 0 0 0 0 1 1 0 0 3 0 0 17 0 1802.9131 P49327;A0A0U1RQF0 P49327 1445 1461 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.7803E-05 77.64 By MS/MS 2 1.4861 1.2909 5.3948 2 Median NaN NaN NaN 0 0 Median 1.4861 1.2909 5.3948 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3132500 1259300 1873200 0 0 0 3132500 1259300 1873200 0 0 0 0 0 0 0 0 0 0 0 0 1511 2377 1578 7709;7710 7965 7965 1 AINEAYKEDYHK ALIEILATRTNAEIRAINEAYKEDYHKSLE EIRAINEAYKEDYHKSLEDALSSDTSGHFR R A I H K S 2 0 1 1 0 0 2 0 1 1 0 2 0 0 0 0 0 0 2 0 0 0 12 1 1479.6994 E5RK69;P08133;E7EMC6 P08133 472 483 ANXA6 Annexin;Annexin A6 no no 2;3 1.4414E-05 106.29 By MS/MS By MS/MS By matching 6 3 1 0.94483 0.9404 21.995 10 Median 0.92104 0.92144 17.665 6 0 Median 1.3734 1.2793 26.719 3 1 Plateau 1.1811 1.358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45000000 19789000 25211000 15032000 7214200 7817500 28681000 12049000 16632000 1287300 525630 761710 0 0 0 0 0 0 0 0 0 1512 1898;854 1579 7711;7712;7713;7714;7715;7716;7717;7718;7719;7720 7966;7967;7968;7969;7970;7971 7969 6 AINFNFGYAK FPPEPNGILHIGHAKAINFNFGYAKANNGI IGHAKAINFNFGYAKANNGICFLRFDDTNP K A I A K A 2 0 2 0 0 0 0 1 0 1 0 1 0 2 0 0 0 0 1 0 0 0 10 0 1143.5713 P47897;A0A1B0GVU9;B4DDN1;C9J165;A0A0U1RR66 P47897 283 292 QARS Glutamine--tRNA ligase yes no 2 0.00056975 73.26 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0813 0.96655 6.7716 5 Median 1.0813 0.96655 NaN 1 0 Median 1.2078 1.0567 NaN 1 0 Median 0.83572 0.882 NaN 1 0 Median 1.1022 0.9586 NaN 1 0 Median 0.98662 1.013 NaN 1 0 Median NaN NaN NaN 0 0 Median 45219000 21971000 23247000 20537000 10335000 10202000 21210000 10038000 11172000 1761600 813460 948140 945810 392830 552970 764450 392230 372230 0 0 0 1513 2356 1580 7721;7722;7723;7724;7725 7972;7973 7973 2 AINGPTSASGDDISK EMAKDVIEEHGPSEKAINGPTSASGDDISK AINGPTSASGDDISKLQRTPGEEKINTLKE K A I S K L 2 0 1 2 0 0 0 2 0 2 0 1 0 0 1 3 1 0 0 0 0 0 15 0 1431.6842 B4DXZ6;P51114;H7C4S4 B4DXZ6 566 580 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.00052444 48.741 By MS/MS 1 0.73575 0.78082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73575 0.78082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2296000 1249500 1046500 0 0 0 0 0 0 2296000 1249500 1046500 0 0 0 0 0 0 0 0 0 1514 608 1581 7726 7974;7975 7974 2 AINIGQLVDVK EPKKEPAGHSQKKGKAINIGQLVDVKVLEK KKGKAINIGQLVDVKVLEKTKDGLEVAVLP K A I V K V 1 0 1 1 0 1 0 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1168.6816 Q14690;A0A3B3IUD7 Q14690 632 642 PDCD11 Protein RRP5 homolog yes no 2 0.00014501 84.213 By matching By MS/MS By MS/MS By MS/MS 2 3 2 1 1.344 1.3072 12.157 8 Median NaN NaN NaN 0 0 Median 1.5247 1.3338 10.386 2 0 Median 1.1646 1.2453 6.5571 3 0 Median 1.7851 1.598 8.2494 2 0 Median 1.1653 1.2197 NaN 1 0 Median NaN NaN NaN 0 0 Median 34544000 14983000 19561000 0 0 0 6835700 2749300 4086400 20250000 8905900 11344000 600050 206260 393790 6858300 3121600 3736700 0 0 0 1515 448 1582 7727;7728;7729;7730;7731;7732;7733;7734 7976;7977;7978;7979;7980;7981;7982 7979 7 AINQGGLTSVAVR FSPEGRLYQVEYAFKAINQGGLTSVAVRGK FKAINQGGLTSVAVRGKDCAVIVTQKKVPD K A I V R G 2 1 1 0 0 1 0 2 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1284.715 G3V5Z7;P60900;G3V295;G3V3I1;G3V3U4 G3V5Z7 31 43 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2;3 4.3287E-07 143.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 1 1 1 1.163 1.0198 17.641 13 Median 1.148 1.0947 22.403 5 0 Median 1.0841 0.91037 19.132 4 1 Median 1.1968 1.1495 NaN 1 0 Median 1.286 1.0678 NaN 1 0 Median 0.98168 0.98706 NaN 1 0 Median 1.163 0.94278 NaN 1 0 Median 421050000 190700000 230350000 306270000 138720000 167550000 74199000 32932000 41267000 20708000 9353300 11354000 5631600 2305000 3326600 11938000 6266200 5671500 2305700 1121000 1184800 1516 1122 1583 7735;7736;7737;7738;7739;7740;7741;7742;7743;7744;7745;7746;7747 7983;7984;7985;7986;7987;7988;7989;7990;7991;7992;7993;7994;7995;7996;7997;7998;7999;8000;8001;8002 7986 19 AINQIAAALFTIHK PAIEGHCNNIHCLAKAINQIAAALFTIHKG KAINQIAAALFTIHKGSIEDRLKEFLALAS K A I H K G 4 0 1 0 0 1 0 0 1 3 1 1 0 1 0 0 1 0 0 0 0 0 14 0 1509.8667 Q9Y2A7 Q9Y2A7 1035 1048 NCKAP1 Nck-associated protein 1 yes yes 3 0.049196 13.413 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1.1573 1.0604 9.0931 6 Median 0.97055 0.9826 NaN 1 0 Median 1.2041 1.0555 NaN 1 0 Median 1.0159 1.069 11.085 2 0 Median 1.2218 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5196 1.2406 NaN 1 0 Median 7106900 3373700 3733300 968200 543890 424310 2364000 1047800 1316100 2187300 971060 1216200 156040 74248 81787 0 0 0 1431500 736670 694780 1517 4383 1584 7748;7749;7750;7751;7752;7753 8003;8004 8004 2 AINQQTGAFVEISR HKCGLVIGRGGENVKAINQQTGAFVEISRQ KAINQQTGAFVEISRQLPPNGDPNFKLFII K A I S R Q 2 1 1 0 0 2 1 1 0 2 0 0 0 1 0 1 1 0 0 1 0 0 14 0 1532.7947 Q92945;A0A087WTP3;M0R3J3 Q92945 449 462 KHSRP Far upstream element-binding protein 2 yes no 2;3 6.0852E-26 183.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 9 7 5 1 1.0038 0.97094 31.753 26 Median 0.97152 0.93766 4.6232 2 0 Median 1.1014 0.95158 7.0773 2 0 Median 0.9861 1.0099 23.598 9 3 Median 1.2426 1.0696 12.359 7 1 Median 0.85572 0.91567 60.004 5 2 Median 1.1695 0.94055 NaN 1 0 Median 1211500000 586150000 625400000 44546000 21863000 22682000 10240000 4851100 5388800 839300000 411470000 427830000 242230000 109400000 132840000 62629000 32952000 29677000 12592000 5605400 6986700 1518 3568 1585 7754;7755;7756;7757;7758;7759;7760;7761;7762;7763;7764;7765;7766;7767;7768;7769;7770;7771;7772;7773;7774;7775;7776;7777;7778;7779 8005;8006;8007;8008;8009;8010;8011;8012;8013;8014;8015;8016;8017;8018;8019;8020;8021;8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041;8042;8043;8044;8045;8046;8047;8048;8049;8050;8051;8052;8053 8035 48 AINSLGAGIIEK GAIQFNPPLSEKKMKAINSLGAGIIEKIAL KMKAINSLGAGIIEKIALQFPYRFWDSKVQ K A I E K I 2 0 1 0 0 0 1 2 0 3 1 1 0 0 0 1 0 0 0 0 0 0 12 0 1184.6765 H0Y6H0;Q8NB78 H0Y6H0 651 662 KDM1B Lysine-specific histone demethylase 1B yes no 2 0.00020862 85.355 By matching By MS/MS By matching 1 3 1 1.0275 0.8791 13.129 5 Median 1.223 0.8791 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98065 0.91213 18.511 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0275 0.86495 NaN 1 0 Median 24413000 12415000 11999000 5259500 2290700 2968900 0 0 0 18883000 9943800 8938800 0 0 0 0 0 0 271360 180470 90892 1519 1155 1586 7780;7781;7782;7783;7784 8054;8055 8055 2 AINTLNGLR GYGFVNYVTAKDAERAINTLNGLRLQSKTI AKDAERAINTLNGLRLQSKTIKVSYARPSS R A I L R L 1 1 2 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 970.55598 Q15717;M0QZR9;A0A494C0Q5;A0A494C015;A0A0A0MRX1;A0A494C147;B1APY9;A0A494C0F8;A0A494C1D9;B1AM48;A0A494C0M6;A0A494C173;A0A494C011;A0A0R4J2E6;Q12926;P26378 Q15717 77 85 ELAVL1;ELAVL2;ELAVL4 ELAV-like protein 1;ELAV-like protein;ELAV-like protein 2;ELAV-like protein 4 yes no 2 0.00017434 143.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 3 2 1.0578 0.9932 13.956 13 Median 1.2023 1.1323 NaN 1 0 Median 1.2749 1.0688 NaN 1 0 Median 0.75825 0.9946 17.297 3 0 Plateau 1.1907 0.9932 9.3545 3 0 Median 1.0168 1.0186 2.2916 3 0 Median 1.0627 0.85836 1.0092 2 0 Median 148430000 70828000 77600000 5672400 2516000 3156400 2764800 1398100 1366700 20400000 9982200 10418000 8633800 3842100 4791700 98026000 47084000 50941000 12931000 6005200 6925700 1520 2964 1587 7785;7786;7787;7788;7789;7790;7791;7792;7793;7794;7795;7796;7797 8056;8057;8058;8059;8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072 8060 17 AINVFVSANR KSFSDTLKTYFKDGKAINVFVSANRLIHQT FKDGKAINVFVSANRLIHQTNLILQTFKTV K A I N R L 2 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 2 0 0 10 0 1089.5931 Q9BUL8;C9J5C3;C9J363 Q9BUL8 187 196 PDCD10 Programmed cell death protein 10 yes no 2 0.0020294 78.334 By MS/MS By matching By MS/MS 1 1 1 1.4481 1.2996 69.664 3 Median 1.3663 1.2996 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.3379 4.1681 NaN 1 0 Median 1.4481 1.2014 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67601000 26750000 40852000 52932000 21786000 31146000 0 0 0 10436000 3137800 7298100 4234100 1826200 2407900 0 0 0 0 0 0 1521 3841 1588 7798;7799;7800 8073;8074 8074 1 AINVQEEK DSVEALIKKHEDFDKAINVQEEKIAALQAF KHEDFDKAINVQEEKIAALQAFADQLIAAG K A I E K I 1 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 8 0 929.48181 A0A0D9SF54;Q13813 Q13813 1493 1500 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.024816 43.124 By MS/MS By MS/MS By MS/MS 1 1 1 1.0114 1.0783 9.803 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98031 1.0907 NaN 1 0 Median 1.0114 0.91214 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0827 0.93024 NaN 1 0 Median 3232000 1614100 1618000 0 0 0 0 0 0 2046500 1031600 1014800 423720 213270 210450 0 0 0 761850 369160 392690 1522 264;2838 1589 7801;7802;7803 8075;8076;8077 8075 3 AIPGVVEK EYMLEKSFYQFQHYRAIPGVVEKVKNSEEQ YQFQHYRAIPGVVEKVKNSEEQYNKIVIPN R A I E K V 1 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 8 0 811.48035 P42285 P42285 597 604 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.01731 48.756 By MS/MS By matching 1 1 1.0973 0.93317 5.9824 2 Median NaN NaN NaN 0 0 Median 1.1251 0.97349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0701 0.89451 NaN 1 0 Median 3812200 1933700 1878500 0 0 0 3432500 1741400 1691100 0 0 0 0 0 0 0 0 0 379630 192230 187400 1523 2309 1590 7804;7805 8078;8079 8078 2 AIPLAIFQAEPTVR YIISRKPEGSPVTERAIPLAIFQAEPTVRK RAIPLAIFQAEPTVRKHFLRKWLKSSSLQD R A I V R K 3 1 0 0 0 1 1 0 0 2 1 0 0 1 2 0 1 0 0 1 0 0 14 0 1524.8664 Q07864;F5H1D6 Q07864 1093 1106 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.00083685 58.676 By MS/MS 1 0.77915 0.86491 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77915 0.86491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1682800 997350 685410 0 0 0 0 0 0 1682800 997350 685410 0 0 0 0 0 0 0 0 0 1524 1020 1591 7806 8080;8081 8080 2 AIPLALEGKDLLAR VTDLGWSRPTLIQEKAIPLALEGKDLLARA KAIPLALEGKDLLARARTGSGKTAAYAIPM K A I A R A 3 1 0 1 0 0 1 1 0 1 4 1 0 0 1 0 0 0 0 0 0 0 14 1 1478.8821 Q9NY93;G3V0G3;F8WDT8;F8WEI3 Q9NY93 37 50 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.032117 19.578 By MS/MS 2 0.90546 0.95349 2.8199 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90546 0.95349 2.8199 2 0 Median NaN NaN NaN 0 0 Median 2100500 1001800 1098700 0 0 0 0 0 0 0 0 0 0 0 0 2100500 1001800 1098700 0 0 0 1525 4173 1592 7807;7808 8082 8082 1 AIPLPIQMYYQQQPVSTSVVR SNGQAHIHVVGVKRRAIPLPIQMYYQQQPV QMYYQQQPVSTSVVRVDSVPDVSPAPSPAG R A I V R V 1 1 0 0 0 4 0 0 0 2 1 0 1 0 3 2 1 0 2 3 0 0 21 0 2417.2777 Q68CP9;F8WCU9;F8W108 Q68CP9 603 623 ARID2 AT-rich interactive domain-containing protein 2 yes no 2;3 2.0296E-06 47.666 By MS/MS By matching 3 2 0.51014 0.54969 18.505 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49861 0.54404 4.0979 3 0 Median 0.82814 0.7301 12.83 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15687000 10095000 5592500 0 0 0 0 0 0 15397000 9912300 5484300 290530 182290 108240 0 0 0 0 0 0 1526 3122 1593 7809;7810;7811;7812;7813 8083;8084;8085;8086;8087 8083 5 AIPNNQVLGK INEKPQVIADYESGRAIPNNQVLGKIERAI YESGRAIPNNQVLGKIERAIGLKLRGKDIG R A I G K I 1 0 2 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1052.5978 O60869 O60869 114 123 EDF1 Endothelial differentiation-related factor 1 yes yes 2 0.00035326 100.19 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 0.95222 0.8505 10.152 7 Median 0.80678 0.75398 17.036 2 0 Median 0.9634 0.82833 NaN 1 0 Median 0.94592 0.89754 2.6075 2 0 Median 1.0215 0.8337 3.8862 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69446000 33955000 35492000 10462000 5608500 4853900 3016700 1496600 1520000 34626000 16944000 17681000 21341000 9905000 11436000 0 0 0 0 0 0 1527 1635 1594 7814;7815;7816;7817;7818;7819;7820 8088;8089;8090;8091;8092;8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114 8096 27 AIPNNQVLGKIER INEKPQVIADYESGRAIPNNQVLGKIERAI GRAIPNNQVLGKIERAIGLKLRGKDIGKPI R A I E R A 1 1 2 0 0 1 1 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 13 1 1450.8256 O60869 O60869 114 126 EDF1 Endothelial differentiation-related factor 1 yes yes 3 0.00020335 68.809 By MS/MS By MS/MS 1 1 0.90808 0.84979 6.0032 2 Median 0.82328 0.81447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0016 0.88664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9883900 5045700 4838200 7438100 3723800 3714200 0 0 0 0 0 0 2445800 1321800 1124000 0 0 0 0 0 0 1528 1635 1595 7821;7822 8115;8116;8117 8115 3 AIPNQGEILVIR FANAQQRSTQLNKKRAIPNQGEILVIRRGW KKRAIPNQGEILVIRRGWLTINNISLMKGG R A I I R R 1 1 1 0 0 1 1 1 0 3 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1321.7718 P50570 P50570 511 522 DNM2 Dynamin-2 yes yes 2 6.328E-06 118.18 By matching By matching By MS/MS By matching By matching 1 2 1 1 1 0.85827 0.81182 41.199 6 Median 0.78984 0.78506 NaN 1 0 Median 0.75308 0.67775 0.049241 2 0 Median 0.93262 0.99462 NaN 1 0 Median 0.98254 0.8395 NaN 1 0 Median 1.9055 2.0248 NaN 1 0 Median NaN NaN NaN 0 0 Median 9609900 4957700 4652200 1739600 753530 986030 660120 363070 297060 5597400 3117800 2479500 805750 414060 391680 807110 309260 497850 0 0 0 1529 2417 1596 7823;7824;7825;7826;7827;7828 8118;8119 8118 2 AIPQLQGYLR IDQKAVDSQILPKIKAIPQLQGYLRSVFAL LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K A I L R S 1 1 0 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1157.6557 Q02878 Q02878 263 272 RPL6 60S ribosomal protein L6 yes yes 2 2.4718E-05 145.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 4 2 7 4 1.0183 0.97744 38.922 27 Median 0.97118 0.98923 11.111 5 2 Plateau 1.0037 0.85119 9.0261 6 1 Median 0.91691 0.95318 95.465 4 1 Median 1.4349 1.2548 28.248 2 0 Median 1.0545 1.0585 8.492 6 1 Median 1.2149 0.99455 10.463 4 0 Median 537990000 271820000 266170000 283200000 141240000 141970000 83011000 40406000 42605000 53882000 33446000 20436000 1688300 716510 971830 96244000 46486000 49758000 19958000 9528900 10430000 1530 2703 1597 7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845;7846;7847;7848;7849;7850;7851;7852;7853;7854;7855;7856;7857 8120;8121;8122;8123;8124;8125;8126;8127;8128;8129;8130;8131;8132;8133;8134;8135;8136;8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155 8122 36 AIPTVNHSGTFSPQAPVPTTVPVVDVR QMNINIATWGRLVRRAIPTVNHSGTFSPQA PQAPVPTTVPVVDVRIPQLAPPASDSTVTK R A I V R I 2 1 1 1 0 1 0 1 1 1 0 0 0 1 5 2 4 0 0 6 0 0 27 0 2785.4763 Q16513;B1AL79 Q16513 524 550 PKN2 Serine/threonine-protein kinase N2 yes no 3 0.0035029 24.096 By MS/MS By MS/MS 1 1 0.41467 0.42802 11.888 2 Median 0.40625 0.39351 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42326 0.46555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9469900 6551400 2918400 3677600 2710600 966950 0 0 0 5792300 3840800 1951500 0 0 0 0 0 0 0 0 0 1531 2982 1598 7858;7859 8156;8157 8157 2 AIPVTRPVPVTKPVTVSR ISKPVSVGRPMPVTKAIPVTRPVPVTKPVT VTRPVPVTKPVTVSRPMPVTKAMPVTKPIT K A I S R P 1 2 0 0 0 0 0 0 0 1 0 1 0 0 4 1 3 0 0 5 0 0 18 2 1916.1571 Q96KM6 Q96KM6 227 244 ZNF512B Zinc finger protein 512B yes yes 3;4 0.0083284 37.431 By MS/MS 2 0.43507 0.51191 2.0062 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43507 0.51191 2.0062 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11805000 7963500 3841100 0 0 0 0 0 0 11805000 7963500 3841100 0 0 0 0 0 0 0 0 0 1532 3694 1599 7860;7861 8158;8159 8159 2 AIQAAFFYLEPR IGSAFRNPEYNKSARAIQAAFFYLEPRHAE SARAIQAAFFYLEPRHAEDKLITREYQTIE R A I P R H 3 1 0 0 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 12 0 1424.7452 CON__Q3SZR3 CON__Q3SZR3 62 73 yes yes 2 0.013154 55.064 By MS/MS 1 0.11494 0.1145 NaN 1 Median 0.11494 0.1145 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3578700 3239400 339330 3578700 3239400 339330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1533 779 1600 7862 8160 8160 1 AIQDEIR KTAKDDSAPREKSQKAIQDEIRSVIRQITA APREKSQKAIQDEIRSVIRQITATVTFLPL K A I I R S 1 1 0 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 843.44503 Q13257 Q13257 123 129 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 2 0.007586 88.734 By MS/MS By MS/MS By MS/MS 1 2 1 1.174 1.1166 4.0631 2 Median 1.1466 1.085 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2022 1.1492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11477000 5075800 6400900 7475200 3313700 4161500 0 0 0 4001500 1762100 2239400 0 0 0 0 0 0 0 0 0 1534 2801 1601 7863;7864;7865;7866 8161;8162;8163;8164;8165 8163 5 AIQDHLLEVEQSK EELHKLLKEAGEANKAIQDHLLEVEQSKDQ NKAIQDHLLEVEQSKDQMEKEMLEKIGRLE K A I S K D 1 0 0 1 0 2 2 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 13 0 1508.7835 P12270 P12270 323 335 TPR Nucleoprotein TPR yes yes 3 0.010372 26.124 By matching By MS/MS 1 1 1.1832 1.0529 3.6023 2 Median NaN NaN NaN 0 0 Median 1.1769 1.0264 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1896 1.0801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6174700 2408500 3766200 0 0 0 4635100 1740700 2894400 0 0 0 1539600 667800 871780 0 0 0 0 0 0 1535 1978 1602 7867;7868 8166 8166 1 AIQDHLLEVEQSKDQMEK EELHKLLKEAGEANKAIQDHLLEVEQSKDQ DHLLEVEQSKDQMEKEMLEKIGRLEKELEN K A I E K E 1 0 0 2 0 3 3 0 1 1 2 2 1 0 0 1 0 0 0 1 0 0 18 1 2140.047 P12270 P12270 323 340 TPR Nucleoprotein TPR yes yes 3;4 6.5517E-13 132.79 By matching By MS/MS By MS/MS By MS/MS 2 1 5 2 0.84697 0.95154 25.909 10 Median 0.86095 0.88974 7.5962 2 0 Median 1.2491 1.2046 NaN 1 0 Median 0.83331 0.96442 29.827 5 1 Median 0.97813 0.95503 41.991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83850000 42189000 41660000 14447000 7946000 6500600 4472800 1924200 2548600 61553000 30805000 30748000 3376900 1513800 1863100 0 0 0 0 0 0 1536 1978 1603;1604 7869;7870;7871;7872;7873;7874;7875;7876;7877;7878 8167;8168;8169;8170;8171;8172 8168 755 6 AIQDHLLEVEQSKDQMEKEMLEK EELHKLLKEAGEANKAIQDHLLEVEQSKDQ VEQSKDQMEKEMLEKIGRLEKELENANDLL K A I E K I 1 0 0 2 0 3 5 0 1 1 3 3 2 0 0 1 0 0 0 1 0 0 23 2 2770.3517 P12270 P12270 323 345 TPR Nucleoprotein TPR yes yes 4 0.039019 11.632 By MS/MS 2 1.1402 1.2967 10.293 2 Median 1.1402 1.2967 10.293 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12060000 5247100 6813300 12060000 5247100 6813300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1537 1978 1605 7879;7880 8173 8173 1 AIQDPAFSDGIR QRAALLKSMLNFLKKAIQDPAFSDGIRHVM LKKAIQDPAFSDGIRHVMDGSLPTSLKHII K A I I R H 2 1 0 2 0 1 0 1 0 2 0 0 0 1 1 1 0 0 0 0 0 0 12 0 1288.6412 Q7Z6Z7;A0A087X1S3 Q7Z6Z7 518 529 HUWE1 E3 ubiquitin-protein ligase HUWE1 no no 2 3.5774E-05 96.143 By MS/MS By matching By matching 2 2 2 1.0529 0.86618 84.702 6 Median 0.34377 0.34729 103.24 2 0 Median 1.0529 0.86618 2.9234 2 0 Median 1.501 1.5816 43.568 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48257000 31018000 17239000 27547000 21685000 5861800 16549000 7855100 8693600 4161600 1478400 2683200 0 0 0 0 0 0 0 0 0 1538 3253;123 1606 7881;7882;7883;7884;7885;7886 8174 8174 1 AIQEWLK AGDGDCGTTHSRAARAIQEWLKEGPPPASP TTHSRAARAIQEWLKEGPPPASPAQLLSKL R A I L K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 7 0 886.49125 Q3LXA3;H0YCY6;I3L252 Q3LXA3 414 420 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.033669 61.997 By MS/MS 1 0.89752 0.86126 NaN 1 Median 0.89752 0.86126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4382500 2108900 2273600 4382500 2108900 2273600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1539 3012 1607 7887 8175 8175 1 AIQGGTSHHLGQNFSK DYTTTIEAFISASGRAIQGGTSHHLGQNFS IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK R A I S K M 1 0 1 0 0 2 0 3 2 1 1 1 0 1 0 2 1 0 0 0 0 0 16 0 1680.8332 P07814 P07814 1235 1250 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3;4 2.8639E-05 70.197 By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 3 2 2 1.2456 1.1757 19.849 16 Median 1.2418 1.2293 10.277 4 0 Median 1.3059 1.1572 17.079 5 0 Median 1.5545 1.6792 1.7818 3 0 Plateau 1.1003 0.99679 12.634 2 0 Median 0.95785 1.0093 3.7626 2 0 Median NaN NaN NaN 0 0 Median 94037000 42090000 51947000 33352000 15185000 18167000 46817000 20584000 26233000 3645000 1540800 2104200 5242300 2403900 2838400 4980700 2376100 2604600 0 0 0 1540 1892 1608 7888;7889;7890;7891;7892;7893;7894;7895;7896;7897;7898;7899;7900;7901;7902;7903 8176;8177;8178;8179;8180;8181;8182;8183;8184;8185;8186;8187;8188;8189 8185 14 AIQINPAFADAHSNLASIHK KEMQDVQGALQCYTRAIQINPAFADAHSNL PAFADAHSNLASIHKDSGNIPEAIASYRTA R A I H K D 5 0 2 1 0 1 0 0 2 3 1 1 0 1 1 2 0 0 0 0 0 0 20 0 2117.1018 O15294 O15294 421 440 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 3;4 7.7339E-09 66.325 By MS/MS By matching By matching 4 1 1 0.85975 0.89165 16.13 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82327 0.89165 9.9504 4 0 Median 0.87057 0.7356 NaN 1 0 Median 1.1033 1.1408 NaN 1 0 Median NaN NaN NaN 0 0 Median 55366000 30197000 25168000 0 0 0 0 0 0 50715000 27757000 22958000 1741800 951570 790220 2908300 1488400 1419900 0 0 0 1541 1537 1609 7904;7905;7906;7907;7908;7909 8190;8191;8192;8193;8194 8193 5 AIQLEYSEAR NNEWARYLYYTGRIKAIQLEYSEARRTMTN TGRIKAIQLEYSEARRTMTNALRKAPQHTA K A I A R R 2 1 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1178.5932 O43242 O43242 297 306 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.00068446 110.87 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1.3009 1.1724 77.565 6 Median 1.433 1.3479 NaN 1 0 Median 1.1811 1.0198 75.852 3 2 Median 1.7246 1.7783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28666 0.35734 NaN 1 0 Median 120640000 53929000 66710000 39339000 18289000 21049000 73955000 32378000 41577000 4942800 1442600 3500200 0 0 0 0 0 0 2401900 1818700 583280 1542 1560 1610 7910;7911;7912;7913;7914;7915 8195;8196;8197;8198;8199 8197 5 AIQLEYSEARR NNEWARYLYYTGRIKAIQLEYSEARRTMTN GRIKAIQLEYSEARRTMTNALRKAPQHTAV K A I R R T 2 2 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 11 1 1334.6943 O43242 O43242 297 307 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2;3 2.9534E-05 125.97 By MS/MS 2 1.0354 1.0201 1.9027 2 Median 1.0354 1.0201 1.9027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28375000 13542000 14833000 28375000 13542000 14833000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1543 1560 1611 7916;7917 8200;8201;8202 8202 3 AIQLNPSYIR MKQDKKEMAINDCSKAIQLNPSYIRAILRR NDCSKAIQLNPSYIRAILRRAELYEKTDKL K A I I R A 1 1 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 10 0 1173.6506 Q99614;H0YB37 Q99614 181 190 TTC1 Tetratricopeptide repeat protein 1 yes no 2 0.00033831 112.41 By MS/MS 1 1.2001 1.2018 NaN 1 Median 1.2001 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31304000 13661000 17643000 31304000 13661000 17643000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1544 3758 1612 7918 8203;8204 8203 2 AIQLNSNSVQALLLK FYSKRYSRALYLGAKAIQLNSNSVQALLLK AIQLNSNSVQALLLKGAALRNMGRVQEAII K A I L K G 2 0 2 0 0 2 0 0 0 1 4 1 0 0 0 2 0 0 0 1 0 0 15 0 1610.9356 Q9UJX3 Q9UJX3 365 379 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.00032492 51.927 By MS/MS By matching By matching 1 2 1 1.16 1.0271 10.569 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0236 1.0413 NaN 1 0 Median 1.16 0.98508 3.9689 2 0 Median NaN NaN NaN 0 0 Median 1.4377 1.2252 NaN 1 0 Median 5346600 2702700 2643900 0 0 0 0 0 0 3665200 1948800 1716400 1071200 497760 573490 0 0 0 610160 256150 354020 1545 4301 1613 7919;7920;7921;7922 8205 8205 1 AIQLSGAEQLEALK SHKDLAGKYRQILEKAIQLSGAEQLEALKA KAIQLSGAEQLEALKAFVEAMVNENVSLVI K A I L K A 3 0 0 0 0 2 2 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 14 0 1469.809 D6RAX7;Q9BT78;D6RFN0 D6RAX7 33 46 COPS4 COP9 signalosome complex subunit 4 yes no 2 1.0576E-05 125.74 By MS/MS By MS/MS By matching 2 1 1 1.1124 1.2199 17.054 4 Linear 1.0728 0.99095 2.3028 2 2 Median NaN NaN NaN 0 0 Median 1.3246 1.3685 NaN 1 0 Median 1.1348 0.94822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50944000 21720000 29224000 35826000 17137000 18689000 0 0 0 14558000 4331400 10227000 559680 252140 307540 0 0 0 0 0 0 1546 813 1614 7923;7924;7925;7926 8206;8207;8208 8208 3 AIQPQAAQGPAAVQQK QQLLKLKQQAVQQQKAIQPQAAQGPAAVQQ IQPQAAQGPAAVQQKITAQQITTPGAQQKV K A I Q K I 5 0 0 0 0 5 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 16 0 1604.8635 Q96L91;A0A0A0MR70 Q96L91 2979 2994 EP400 E1A-binding protein p400 yes no 2 0.035944 23.851 By MS/MS By matching 1 1 0.65695 0.65983 0.77267 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59709 0.65623 NaN 1 0 Median 0.72282 0.66344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1922400 1199600 722830 0 0 0 0 0 0 1592700 1015900 576780 329660 183610 146050 0 0 0 0 0 0 1547 3700 1615 7927;7928 8209 8209 1 AIRDEAIYHFR DITSSEEKPDVSFDKAIRDEAIYHFRLLKD SFDKAIRDEAIYHFRLLKDEIVDHWRGPEG K A I F R L 2 2 0 1 0 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 11 1 1389.7153 H0YL22;Q9Y375;H0YNN4;H0YNB7 H0YL22 85 95 NDUFAF1 Complex I intermediate-associated protein 30, mitochondrial yes no 3 0.0058046 51.979 By MS/MS 1 1.0356 1.1148 NaN 1 Median 1.0356 1.1148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11227000 5617400 5609800 11227000 5617400 5609800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1548 1195 1616 7929 8210 8210 1 AIRDGVIEASINHEK LQLDSPEDAEFIVAKAIRDGVIEASINHEK AIRDGVIEASINHEKGYVQSKEMIDIYSTR K A I E K G 2 1 1 1 0 0 2 1 1 3 0 1 0 0 0 1 0 0 0 1 0 0 15 1 1650.8689 O43242 O43242 441 455 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 3;4 5.6104E-05 75.968 By MS/MS 3 1.0687 1.0709 9.9824 3 Median 1.0687 1.0709 9.9824 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43656000 19417000 24239000 43656000 19417000 24239000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1549 1560 1617 7930;7931;7932 8211;8212;8213;8214 8213 4 AIRLELQGPR KEALNSCNKREIEGRAIRLELQGPRGSPNA EIEGRAIRLELQGPRGSPNARSQPSKTLFV R A I P R G 1 2 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 10 1 1151.6775 P19338;H7BY16 P19338 552 561 NCL Nucleolin yes no 2 0.0015701 124.92 By MS/MS By matching By matching 1 1 1 1.3003 1.3944 27.587 3 Median 0.78768 0.87513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3003 1.3944 NaN 1 0 Median 1.6141 1.427 NaN 1 0 Median 14144000 6648400 7495300 6055200 3174700 2880500 0 0 0 0 0 0 0 0 0 3517200 1471000 2046200 4571400 2002700 2568600 1550 2063 1618 7933;7934;7935 8215 8215 1 AIRPQIDLK EDPQTSREIFNFVLKAIRPQIDLKRYAVPS FNFVLKAIRPQIDLKRYAVPSAGLRLFALH K A I L K R 1 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1052.6342 P78527 P78527 255 263 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.000592 145.16 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 1 0.88813 0.95292 18.403 10 Median 0.75729 0.78025 3.2118 2 0 Median 1.4419 1.3194 NaN 1 0 Median 0.76999 0.90969 3.6826 2 0 Median 1.1822 1.1043 6.4104 3 0 Plateau 0.73515 0.83411 NaN 1 0 Median 1.4025 1.2459 NaN 1 0 Median 202900000 105510000 97383000 38942000 22559000 16383000 62396000 28151000 34246000 78486000 43267000 35219000 10603000 4849300 5753500 9752000 5522200 4229800 2716600 1164500 1552200 1551 2647 1619 7936;7937;7938;7939;7940;7941;7942;7943;7944;7945 8216;8217;8218;8219;8220;8221;8222;8223;8224 8219 9 AIRPQIDLKR EDPQTSREIFNFVLKAIRPQIDLKRYAVPS NFVLKAIRPQIDLKRYAVPSAGLRLFALHA K A I K R Y 1 2 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 10 2 1208.7353 P78527 P78527 255 264 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.0824E-09 151.15 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 3 3 0.79216 0.93448 23.263 12 Median 0.89377 0.86222 16.804 2 0 Median 1.394 1.3442 NaN 1 0 Median 0.7877 0.89613 4.9336 3 0 Median 1.4423 1.4657 NaN 1 0 Median 0.70683 0.77575 10.313 3 0 Median 1.3853 1.2462 10.681 2 0 Median 156970000 86012000 70956000 21045000 11301000 9744300 9481500 4348400 5133000 100470000 56695000 43779000 804300 392560 411740 20452000 11338000 9114100 4709900 1936800 2773200 1552 2647 1620 7946;7947;7948;7949;7950;7951;7952;7953;7954;7955;7956;7957;7958 8225;8226;8227;8228;8229;8230;8231;8232;8233;8234;8235;8236;8237;8238;8239;8240 8237 13 AISAANLHLR YETQTFSSKTEWRVRAISAANLHLRTNHIY EWRVRAISAANLHLRTNHIYVSSDDIKETG R A I L R T 3 1 1 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1064.6091 Q6P2Q9 Q6P2Q9 2077 2086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 1.0649E-07 143.11 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 3 1.3144 1.164 41.577 11 Median 1.4317 1.3956 NaN 1 0 Median 0.67183 0.62703 90.399 2 0 Median 0.98565 1.0743 NaN 1 0 Median 1.4657 1.2826 11.87 2 0 Median 1.0803 1.1031 7.5895 2 2 Median 1.3144 1.0876 31.52 3 1 Median 83484000 38869000 44616000 3517100 1244200 2272900 4060400 2066100 1994300 18144000 9224500 8919800 5513200 2223000 3290200 40601000 19195000 21406000 11648000 4916200 6732300 1553 3157 1621 7959;7960;7961;7962;7963;7964;7965;7966;7967;7968;7969 8241;8242;8243;8244;8245;8246;8247 8243 7 AISAHFDDSSASSLK RNCFPKQTAAQVTLKAISAHFDDSSASSLK AISAHFDDSSASSLKNVYFLLFDSESIGIY K A I L K N 3 0 0 2 0 0 0 0 1 1 1 1 0 1 0 5 0 0 0 0 0 0 15 0 1534.7264 Q9P0M6 Q9P0M6 333 347 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 7.3121E-10 159.44 By matching By MS/MS By MS/MS 1 7 6 1.1056 1.1269 32.479 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79316 0.65423 NaN 1 0 Median 0.89063 0.91668 17.537 7 0 Median 1.7408 1.4232 20.972 6 1 Median 229490000 121800000 107680000 0 0 0 0 0 0 0 0 0 397170 180110 217050 212120000 115960000 96165000 16964000 5662100 11302000 1554 4206 1622 7970;7971;7972;7973;7974;7975;7976;7977;7978;7979;7980;7981;7982;7983 8248;8249;8250;8251;8252;8253;8254;8255 8249 8 AISEAQESVTK SLPPSKQANKNLILKAISEAQESVTKTTNY LILKAISEAQESVTKTTNYSTVPQKQTLPV K A I T K T 2 0 0 0 0 1 2 0 0 1 0 1 0 0 0 2 1 0 0 1 0 0 11 0 1161.5877 Q6PJT7;H0YJA2;G3V256;G3V5I6;A0A087WTC9;H0YJ87 Q6PJT7 358 368 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 2 0.039759 28.013 By MS/MS By matching 1 1 1.0001 0.94363 28.125 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0808 1.1513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92545 0.77345 NaN 1 0 Median 1969500 991420 978070 0 0 0 0 0 0 1550900 793630 757220 0 0 0 0 0 0 418640 197790 220850 1555 3175 1623 7984;7985 8256 8256 1 AISEQTGKELLYK ______________________________ AKAISEQTGKELLYKFICTTSAIQNRFKYA K A I Y K F 1 0 0 0 0 1 2 1 0 1 2 2 0 0 0 1 1 0 1 0 0 0 13 1 1478.7981 P53396;K7ESG8 P53396 5 17 ACLY ATP-citrate synthase yes no 2;3 0.0022077 72.79 By MS/MS 2 1.3604 1.4249 12.789 2 Median 1.3604 1.4249 12.789 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22742000 9346900 13395000 22742000 9346900 13395000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1556 2467 1624 7986;7987 8257;8258 8258 2 AISGLEQDQPAR SQKGALTTVEGLITRAISGLEQDQPARRAN ITRAISGLEQDQPARRANKDATAERIDEFI R A I A R R 2 1 0 1 0 2 1 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 12 0 1283.647 H7C0E5;H7BZM7;O75312 H7C0E5 96 107 ZPR1 Zinc finger protein ZPR1 yes no 2 0.00058519 73.985 By MS/MS 1 0.65625 0.57177 NaN 1 Median NaN NaN NaN 0 0 Median 0.65625 0.57177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1156500 615000 541520 0 0 0 1156500 615000 541520 0 0 0 0 0 0 0 0 0 0 0 0 1557 1252 1625 7988 8259 8259 1 AISGVHTVR GTIGHVAHGKSTVVKAISGVHTVRFKNELE KSTVVKAISGVHTVRFKNELERNITIKLGY K A I V R F 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 938.52976 P41091;Q2VIR3;H7BZU1 P41091 60 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.0078737 50.607 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1.2787 1.2517 11.854 8 Median 1.2803 1.2547 5.8485 2 0 Median 1.1926 1.0312 NaN 1 0 Median 1.3072 1.3281 1.2378 3 0 Median 1.2613 1.0506 7.2796 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396900 2334500 3062400 639090 260420 378670 1915400 856490 1058900 2007200 853270 1154000 835150 364320 470830 0 0 0 0 0 0 1558 2295 1626 7989;7990;7991;7992;7993;7994;7995;7996 8260;8261;8262;8263;8264;8265 8264 6 AISHEHSPSDLEAHFVPLVK VEETVVRDKAVESLRAISHEHSPSDLEAHF HSPSDLEAHFVPLVKRLAGGDWFTSRTSAC R A I V K R 2 0 0 1 0 0 2 0 3 1 2 1 0 1 2 3 0 0 0 2 0 0 20 0 2212.1277 P30153;C9J9C1 P30153 114 133 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 3;4 5.1756E-09 78.661 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.75783 0.70986 7.5126 6 Median 0.74874 0.69457 0.79377 2 0 Median 0.85574 0.72142 NaN 1 0 Median 0.79013 0.77942 7.4238 2 0 Median NaN NaN NaN 0 0 Median 0.69145 0.66034 NaN 1 0 Median NaN NaN NaN 0 0 Median 124510000 66858000 57652000 93757000 49725000 44031000 6920500 3689500 3231000 20910000 11656000 9253800 0 0 0 2922200 1786400 1135800 0 0 0 1559 2190 1627 7997;7998;7999;8000;8001;8002 8266;8267;8268;8269;8270;8271;8272 8267 7 AISKDHLYGTLDPNTR RLEGVEGVAHIIDPKAISKDHLYGTLDPNT ISKDHLYGTLDPNTREWTDGLFTHVLRKII K A I T R E 1 1 1 2 0 0 0 1 1 1 2 1 0 0 1 1 2 0 1 0 0 0 16 1 1799.9166 Q14204;A0A2R8YFZ7 Q14204 2258 2273 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 4.2733E-06 84.829 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.0247 1.0139 21.019 7 Median 0.83803 0.881 24.922 2 0 Median 1.1062 1.0139 NaN 1 0 Median 1.0118 1.1753 33.853 2 0 Median 1.0774 1.0035 7.0927 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206110000 110150000 95961000 79413000 44511000 34902000 49128000 24313000 24815000 67087000 36065000 31022000 10485000 5263300 5221900 0 0 0 0 0 0 1560 2865 1628 8003;8004;8005;8006;8007;8008;8009 8273;8274;8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285 8282 13 AISNNEADAVTLDGGLVYEAGLKPNNLKPVVAEFHGTK FVSCVKKTSHMDCIKAISNNEADAVTLDGG PNNLKPVVAEFHGTKDNPQTHYYAVAVVKK K A I T K D 5 0 4 2 0 0 3 4 1 1 4 3 0 1 2 1 2 0 1 4 0 0 38 2 3951.0378 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 69 106 yes no 5 0.054794 11.725 By MS/MS 1 0.062441 0.06101 NaN 1 Median 0.062441 0.06101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3844300 3710100 134150 3844300 3710100 134150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1561 769 1629 8010 8286 8286 1 AISSASSPQSPGDALR WSDFPSWAMELLVEKAISSASSPQSPGDAL ISSASSPQSPGDALRRVFECISSGIILKGS K A I L R R 3 1 0 1 0 1 0 1 0 1 1 0 0 0 2 5 0 0 0 0 0 0 16 0 1542.7638 Q96KR1 Q96KR1 954 969 ZFR Zinc finger RNA-binding protein yes yes 2 9.0341E-20 186.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.82326 0.76032 6.1847 6 Median NaN NaN NaN 0 0 Median 0.81941 0.69939 NaN 1 0 Median 0.72125 0.79307 NaN 1 0 Median 0.8835 0.75592 10.04 2 0 Median 0.71898 0.74633 NaN 1 0 Median 0.95178 0.77457 NaN 1 0 Median 24887000 15186000 9700700 0 0 0 3133200 1711400 1421800 11352000 7971200 3380700 3385900 1762100 1623800 5967200 3230600 2736600 1048500 510560 537910 1562 3697 1630 8011;8012;8013;8014;8015;8016 8287;8288;8289;8290;8291;8292;8293 8288 7 AISSASSPQSPGDALRR WSDFPSWAMELLVEKAISSASSPQSPGDAL SSASSPQSPGDALRRVFECISSGIILKGSP K A I R R V 3 2 0 1 0 1 0 1 0 1 1 0 0 0 2 5 0 0 0 0 0 0 17 1 1698.8649 Q96KR1 Q96KR1 954 970 ZFR Zinc finger RNA-binding protein yes yes 3 0.036452 22.154 By MS/MS 1 0.46436 0.56475 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46436 0.56475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7415800 5017600 2398200 0 0 0 0 0 0 7415800 5017600 2398200 0 0 0 0 0 0 0 0 0 1563 3697 1631 8017 8294 8294 1 AISSSAISR PLSEAEFEEIMNRNRAISSSAISRAVSDAS IMNRNRAISSSAISRAVSDASAGDYGSAIE R A I S R A 2 1 0 0 0 0 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 0 9 0 890.48214 F8WJN3;Q16630 F8WJN3 350 358 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 0.011498 62.546 By MS/MS By MS/MS By MS/MS 1 1 1 8.8729 8.276 162.07 2 Median NaN NaN NaN 0 0 Median 30.196 26.034 NaN 1 1 Median 2.6073 2.6309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115190000 10929000 104260000 0 0 0 86153000 3187700 82965000 29041000 7741700 21300000 0 0 0 0 0 0 0 0 0 1564 1099 1632 8018;8019;8020 8295;8296;8297 8295 3 AISSTEAVLNNR EGALIQFATYEEAKKAISSTEAVLNNRFIK AKKAISSTEAVLNNRFIKVYWHREGSTQQL K A I N R F 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1273.6626 Q5T8P6;Q9P2N5;U3KPZ7 Q5T8P6 586 597 RBM26;RBM27 RNA-binding protein 26;RNA-binding protein 27 no no 2 6.8685E-06 159.58 By MS/MS By MS/MS By MS/MS 1 1 2 0.96077 0.92161 21.16 4 Median NaN NaN NaN 0 0 Median 1.2124 1.0362 NaN 1 0 Median 0.85638 0.94156 NaN 1 0 Median 0.93276 0.75857 24.506 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19129000 9821500 9307500 0 0 0 2939100 1190400 1748600 14611000 7902600 6708300 1579000 728460 850540 0 0 0 0 0 0 1565 3097;4227 1633 8021;8022;8023;8024 8298;8299;8300;8301;8302 8299 5 AISSYFVSTMSSSIK RNGFPKQTAAQLILKAISSYFVSTMSSSIK AISSYFVSTMSSSIKTVYFVLFDSESIGIY K A I I K T 1 0 0 0 0 0 0 0 0 2 0 1 1 1 0 6 1 0 1 1 0 0 15 0 1606.7913 O75367;B4DJC3 O75367 333 347 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 3.976E-05 84.289 By MS/MS By matching 10 3 1.0625 1.0407 22.929 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0705 1.0539 17.863 10 0 Median 1.0176 0.83697 28.265 3 0 Median 178830000 83221000 95613000 0 0 0 0 0 0 0 0 0 0 0 0 176220000 82024000 94199000 2611900 1197200 1414700 1566 1662 1634;1635 8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037 8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313;8314 8309 527 12 AISTLLKK NAKLFSDEAANIYERAISTLLKKNMLLYFA AANIYERAISTLLKKNMLLYFAYADYEESR R A I K K N 1 0 0 0 0 0 0 0 0 1 2 2 0 0 0 1 1 0 0 0 0 0 8 1 872.5695 Q12996;E9PLP8 Q12996 331 338 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.038059 41.652 By MS/MS By matching By matching 1 1 1 1.2135 1.2349 8.5721 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1528 1.3055 NaN 1 0 Median 1.2641 1.2349 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2135 1.1034 NaN 1 0 Median 3599700 1613000 1986600 0 0 0 0 0 0 3069200 1414100 1655100 192630 67496 125130 0 0 0 337800 131400 206400 1567 2777 1636 8038;8039;8040 8315 8315 1 AISYHLVQKPFSLTK VMLAAQSRRSVPLLRAISYHLVQKPFSLTK AISYHLVQKPFSLTKDVLLDVAYAYGKLSF R A I T K D 1 0 0 0 0 1 0 0 1 1 2 2 0 1 1 2 1 0 1 1 0 0 15 1 1730.9719 Q969Z0;C9J7P5;C9IZN7 Q969Z0 278 292 TBRG4 Protein TBRG4 yes no 2;3 0.00011104 85.288 By MS/MS 2 1.0605 0.99129 8.4043 2 Median 1.0605 0.99129 8.4043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39679000 19721000 19958000 39679000 19721000 19958000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1568 3591 1637 8041;8042 8316;8317;8318 8318 3 AITAGYFYHTAR VGLSSCQGDYIRVRKAITAGYFYHTARLTR VRKAITAGYFYHTARLTRSGYRTVKQQQTV K A I A R L 3 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 2 0 2 0 0 0 12 0 1369.6779 O60231;Q5SQH5;A0A140T8Y5 O60231 942 953 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 0.035434 34.179 By matching By MS/MS 1 1 0.83852 0.72734 40.031 2 Median NaN NaN NaN 0 0 Median 1.0937 0.96532 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64287 0.54803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2092700 1079500 1013200 0 0 0 911430 421370 490060 0 0 0 1181300 658120 523140 0 0 0 0 0 0 1569 1605 1638 8043;8044 8319 8319 0 AITAMGFK NLSFQDMNLSRPLLKAITAMGFKQPTPIQK LSRPLLKAITAMGFKQPTPIQKACIPVGLL K A I F K Q 2 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 8 0 837.44186 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 201 208 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.028842 40.103 By matching By MS/MS 1 1 1.1972 0.99769 23.228 2 Median NaN NaN NaN 0 0 Median 1.0066 0.84657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4239 1.1758 NaN 1 0 Median 2010700 803660 1207000 0 0 0 264720 157000 107720 0 0 0 0 0 0 0 0 0 1745900 646660 1099300 1570 635 1639 8045;8046 8320 8320 1 AITDGQAGFGNDTLSK AYSSSYGYPPSSLGRAITDGQAGFGNDTLS ITDGQAGFGNDTLSKVPGISSIEQGMTGLK R A I S K V 2 0 1 2 0 1 0 3 0 1 1 1 0 1 0 1 2 0 0 0 0 0 16 0 1593.7635 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 A0A024R7W5 114 129 YTHDF3 YTH domain-containing family protein 3 yes no 2 9.7627E-07 92.925 By MS/MS By matching By MS/MS 1 1 1 1.0814 1.0194 12.514 3 Median 1.0814 1.0194 NaN 1 0 Median 1.196 1.0328 NaN 1 0 Median 0.78573 0.82638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17501000 7966300 9534900 9979600 4309500 5670100 2214300 1148200 1066100 5307400 2508700 2798700 0 0 0 0 0 0 0 0 0 1571 6 1640 8047;8048;8049 8321;8322;8323 8321 3 AITFFTEDDKPLLR IHRIGRTGRAGNKGKAITFFTEDDKPLLRS KAITFFTEDDKPLLRSVANVIQQAGCPVPE K A I L R S 1 1 0 2 0 0 1 0 0 1 2 1 0 2 1 0 2 0 0 0 0 0 14 1 1664.8774 Q9Y2R4;A0A087X121 Q9Y2R4 512 525 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 3 0.0083147 40.552 By MS/MS 1 0.79191 0.84026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79191 0.84026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5027000 2793700 2233300 0 0 0 0 0 0 5027000 2793700 2233300 0 0 0 0 0 0 0 0 0 1572 4389 1641 8050 8324 8324 1 AITFLQSATR GIAYLVKVSEGDLRKAITFLQSATRLTGGK GDLRKAITFLQSATRLTGGKEITEKVITDI K A I T R L 2 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 2 0 0 0 0 0 10 0 1106.6084 P35249;C9JZI1;H7C1P0 P35249 241 250 RFC4 Replication factor C subunit 4 yes no 2 0.00013954 131.22 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1.2054 1.0006 31.368 7 Median 1.0867 1.0469 47.835 2 1 Median 1.2889 1.0838 41.121 3 0 Median 0.91818 0.89408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2054 1.0006 NaN 1 0 Median 37018000 17150000 19868000 17041000 7772800 9268400 3995900 1665800 2330100 13682000 6722200 6960200 0 0 0 0 0 0 2298200 989300 1308900 1573 2237 1642 8051;8052;8053;8054;8055;8056;8057;8058;8059 8325;8326;8327;8328;8329;8330 8329 6 AITGASLADIMAK EIQKKRTRRAVKFQRAITGASLADIMAKRN QRAITGASLADIMAKRNQKPEVRKAQREQA R A I A K R 4 0 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1260.6748 C9JXB8;C9JNW5;P83731 C9JXB8 81 93 RPL24 60S ribosomal protein L24 yes no 2 5.5411E-07 106.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 3 5 1.1927 1.0486 11.396 19 Median 1.0735 0.98609 7.3154 4 1 Median 1.1721 0.9741 2.2204 2 0 Median 1.1144 1.0454 0.52425 2 0 Median 1.3221 1.0964 13.777 3 0 Median 1.2028 1.2359 10.819 3 0 Median 1.3144 1.0486 11.916 5 0 Median 1222900000 557550000 665360000 688330000 317890000 370440000 68877000 31099000 37778000 93716000 42035000 51681000 14962000 6445800 8516100 276290000 124760000 151530000 80736000 35317000 45419000 1574 713 1643;1644 8060;8061;8062;8063;8064;8065;8066;8067;8068;8069;8070;8071;8072;8073;8074;8075;8076;8077;8078 8331;8332;8333;8334;8335;8336;8337;8338;8339;8340;8341;8342;8343;8344;8345;8346;8347;8348;8349;8350;8351;8352;8353;8354;8355;8356;8357;8358 8345 252 28 AITGASLADIMAKR EIQKKRTRRAVKFQRAITGASLADIMAKRN RAITGASLADIMAKRNQKPEVRKAQREQAI R A I K R N 4 1 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 14 1 1416.7759 C9JXB8;C9JNW5;P83731 C9JXB8 81 94 RPL24 60S ribosomal protein L24 yes no 3 0.00026017 50.563 By matching By MS/MS 1 1 1.3364 1.4088 10.328 2 Median 1.4392 1.5155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2409 1.3095 NaN 1 0 Median NaN NaN NaN 0 0 Median 4581100 1597400 2983700 2667500 707070 1960400 0 0 0 0 0 0 0 0 0 1913500 890300 1023200 0 0 0 1575 713 1645 8079;8080 8359 8359 1 AITGFDDPFSGK LIDFDDRQQIYAAEKAITGFDDPFSGKTVS AEKAITGFDDPFSGKTVSVSEAIKKNLIDR K A I G K T 1 0 0 2 0 0 0 2 0 1 0 1 0 2 1 1 1 0 0 0 0 0 12 0 1253.5928 P15924 P15924 2092 2103 DSP Desmoplakin yes yes 2 0.00060982 68.893 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 3 0.99532 0.91896 14.648 12 Median 0.86712 0.8506 19.979 2 0 Median 1.0245 0.8966 9.7408 3 0 Plateau 0.58821 0.63008 NaN 1 0 Median 1.0512 0.96913 8.4539 2 0 Median 0.79054 0.82793 NaN 1 0 Median 1.1857 1.016 4.6905 3 0 Plateau 50500000 27025000 23475000 18126000 9246300 8879400 2757100 1241800 1515200 8133700 5177300 2956500 1395200 594510 800700 16859000 9353500 7505900 3229000 1411400 1817600 1576 2021 1646 8081;8082;8083;8084;8085;8086;8087;8088;8089;8090;8091;8092 8360;8361;8362;8363;8364;8365;8366;8367;8368;8369 8362 10 AITGIQAFTASK TYEGTHDIHALILGRAITGIQAFTASK___ LGRAITGIQAFTASK_______________ R A I S K - 3 0 0 0 0 1 0 1 0 2 0 1 0 1 0 1 2 0 0 0 0 0 12 0 1206.6608 Q92947 Q92947 427 438 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes yes 2 4.3735E-05 95.573 By MS/MS 1 0.66162 0.6144 NaN 1 Median 0.66162 0.6144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10760000 5885000 4875100 10760000 5885000 4875100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1577 3569 1647 8093 8370;8371 8371 2 AITHLNNNFMFGQK GAAMVEMADGYAVDRAITHLNNNFMFGQKL RAITHLNNNFMFGQKLNVCVSKQPAIMPGQ R A I Q K L 1 0 3 0 0 1 0 1 1 1 1 1 1 2 0 0 1 0 0 0 0 0 14 0 1633.8035 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0 P14866 435 448 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2;3 6.2168E-43 222.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 9 14 21 15 1.1352 1.0476 25.228 63 Median 2.067 1.9344 NaN 1 0 Median 1.2008 1.0308 5.6108 3 0 Median 1.029 0.99023 9.4896 9 0 Median 1.2667 1.0623 43.551 14 2 Median 1.036 1.0431 19.893 21 0 Median 1.2609 1.0342 9.7906 15 0 Median 2500900000 1199300000 1301600000 16643000 4604500 12038000 16247000 7540300 8706500 1066600000 521020000 545620000 104130000 44944000 59190000 1212600000 584460000 628170000 84589000 36755000 47834000 1578 2011;436;1419 1648;1649 8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115;8116;8117;8118;8119;8120;8121;8122;8123;8124;8125;8126;8127;8128;8129;8130;8131;8132;8133;8134;8135;8136;8137;8138;8139;8140;8141;8142;8143;8144;8145;8146;8147;8148;8149;8150;8151;8152;8153;8154;8155;8156 8372;8373;8374;8375;8376;8377;8378;8379;8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390;8391;8392;8393;8394;8395;8396;8397;8398;8399;8400;8401;8402;8403;8404;8405;8406;8407;8408;8409;8410;8411;8412;8413;8414;8415;8416;8417;8418;8419;8420;8421;8422;8423;8424;8425;8426;8427;8428;8429;8430;8431;8432;8433;8434;8435;8436;8437;8438;8439;8440;8441;8442;8443;8444;8445;8446;8447;8448;8449;8450 8383 190 79 AITIAGIPQSIIECVK QVQVAGDMLPNSTERAITIAGIPQSIIECV ITIAGIPQSIIECVKQICVVMLETLSQSPP R A I V K Q 2 0 0 0 1 1 1 1 0 5 0 1 0 0 1 1 1 0 0 1 0 0 16 0 1711.9542 F8VRH0;H3BRU6;F8VZX2;F8VXH9;Q15366 Q15366 145 160 PCBP2 Poly(rC)-binding protein 2 no no 2 5.6725E-05 78.653 By matching By MS/MS By matching By matching By matching 1 3 2 1 2 1.0248 0.89719 28.23 8 Median 0.81562 0.79517 NaN 1 0 Median 1.0356 0.88209 10.795 2 0 Median 0.80918 0.83398 5.0741 2 0 Median NaN NaN NaN 0 0 Median 1.8836 1.8321 NaN 1 0 Median 1.2442 1.0442 16.203 2 0 Median 9300400 4686300 4614100 318510 160710 157800 6408300 3102300 3306000 1423200 871090 552110 0 0 0 164450 60361 104090 985930 491820 494100 1579 2942;1077;1062 1650 8157;8158;8159;8160;8161;8162;8163;8164;8165 8451;8452;8453;8454 8453 4 AITIAGVPQSVTECVK QVQVAGDMLPNSTERAITIAGVPQSVTECV ITIAGVPQSVTECVKQICLVMLETLSQSPQ R A I V K Q 2 0 0 0 1 1 1 1 0 2 0 1 0 0 1 1 2 0 0 3 0 0 16 0 1671.8866 Q15365 Q15365 145 160 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.036776 23.749 By matching By MS/MS By matching 2 1 1 0.84555 0.76712 19.717 4 Median NaN NaN NaN 0 0 Median 0.79056 0.67651 26.818 2 0 Median 0.74726 0.71961 NaN 1 0 Median 1.0194 0.87537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7501200 4249400 3251800 0 0 0 5460800 3195400 2265400 1874500 973710 900760 165910 80266 85648 0 0 0 0 0 0 1580 2941 1651 8166;8167;8168;8169 8455 8455 1 AITPQAQEELQK EVELQEGKVHSESDKAITPQAQEELQKQER SDKAITPQAQEELQKQERESAKSELTES__ K A I Q K Q 2 0 0 0 0 3 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 12 0 1354.7092 Q02952 Q02952 1758 1769 AKAP12 A-kinase anchor protein 12 yes yes 2 3.9328E-06 112.75 By MS/MS 3 0.8746 0.76651 12.109 3 Median NaN NaN NaN 0 0 Median 0.8746 0.76651 12.109 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25188000 13381000 11807000 0 0 0 25188000 13381000 11807000 0 0 0 0 0 0 0 0 0 0 0 0 1581 2705 1652 8170;8171;8172 8456;8457;8458;8459;8460;8461 8457 6 AITPQAQEELQKQER EVELQEGKVHSESDKAITPQAQEELQKQER AITPQAQEELQKQERESAKSELTES_____ K A I E R E 2 1 0 0 0 4 3 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 15 1 1767.9115 Q02952 Q02952 1758 1772 AKAP12 A-kinase anchor protein 12 yes yes 2;3 2.1935E-10 110.97 By MS/MS By MS/MS 1 1 0.76398 0.74555 12.511 2 Median 0.66602 0.68243 NaN 1 0 Median 0.87636 0.81451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9985200 5190500 4794700 2808200 1531600 1276600 7177000 3658900 3518100 0 0 0 0 0 0 0 0 0 0 0 0 1582 2705 1653 8173;8174 8462;8463 8463 2 AITSAYYR IKAQIWDTAGQERYRAITSAYYRGAVGALL AGQERYRAITSAYYRGAVGALLVYDIAKHL R A I Y R G 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 8 0 943.47633 H3BSC1;P62491;H3BMH2;P57735;Q15907 Q15907 75 82 RAB11A;RAB25;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-25;Ras-related protein Rab-11B no no 2 9.8244E-06 162.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1.1114 0.99581 11.883 6 Median 1.2292 1.1688 NaN 1 0 Median 1.2501 1.0573 NaN 1 0 Median 1.0366 0.99581 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1114 0.88608 11.882 2 1 Median 85082000 39198000 45884000 42895000 19078000 23817000 11659000 4881900 6777500 29153000 14622000 14530000 0 0 0 0 0 0 1376000 616020 759940 1583 1233;2976 1654 8175;8176;8177;8178;8179;8180;8181 8464;8465;8466;8467;8468;8469 8467 6 AITTGLQEYVEAVSFQHFIK VAQELSGEDMHQFHRAITTGLQEYVEAVSF LQEYVEAVSFQHFIKTRSLISMDEINKQLI R A I I K T 2 0 0 0 0 2 2 1 1 2 1 1 0 2 0 1 2 0 1 2 0 0 20 0 2280.179 Q99598;C4P0D6;C4P0D8;Q5VVQ1 Q99598 119 138 TSNAX;DISC1 Translin-associated protein X yes no 3 2.5497E-06 60.564 By MS/MS By matching 1 1 0.78208 0.70401 54.287 2 Median NaN NaN NaN 0 0 Median 1.2321 1.0335 NaN 1 0 Median 0.49641 0.47959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6564400 3129400 3434900 0 0 0 4908900 2077700 2831100 1655500 1051700 603820 0 0 0 0 0 0 0 0 0 1584 3756 1655 8182;8183 8470 8470 0 AITTSLTTK LTVLWLFSSVKADSKAITTSLTTKWFSTPL VKADSKAITTSLTTKWFSTPLLLEASEFLA K A I T K W 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 4 0 0 0 0 0 9 0 934.53351 Q9NYU2;F8WCI2;F8WCE6 Q9NYU2 46 54 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 2 0.001584 79.906 By MS/MS By MS/MS 1 1 1.7677 1.5703 NaN 1 Median NaN NaN NaN 0 0 Median 1.7677 1.5703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3089600 1151600 1938000 0 0 0 3089600 1151600 1938000 0 0 0 0 0 0 0 0 0 0 0 0 1585 4179 1656 8184;8185 8471;8472;8473 8472 3 AITVFSPDGHLFQVEYAQEAVK ______________________________ DGHLFQVEYAQEAVKKGSTAVGVRGRDIVV R A I V K K 3 0 0 1 0 2 2 1 1 1 1 1 0 2 1 1 1 0 1 3 0 0 22 0 2448.2325 O14818;Q8TAA3;F5GY34 O14818 6 27 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 3 2.5358E-09 53.201 By MS/MS By MS/MS 1 1 1.0819 0.95774 17.843 2 Median 1.1639 1.0865 NaN 1 0 Median 1.0057 0.84422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18590000 9130300 9459800 12286000 6114100 6172300 6303600 3016200 3287400 0 0 0 0 0 0 0 0 0 0 0 0 1586 1497 1657 8186;8187 8474;8475 8474 2 AITVFSPDGHLFQVEYAQEAVKK ______________________________ GHLFQVEYAQEAVKKGSTAVGVRGRDIVVL R A I K K G 3 0 0 1 0 2 2 1 1 1 1 2 0 2 1 1 1 0 1 3 0 0 23 1 2576.3275 O14818;Q8TAA3;F5GY34 O14818 6 28 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 3 1.7331E-16 71.592 By MS/MS By matching 1 1 1.0349 0.99749 7.3971 2 Median 0.93325 0.94666 NaN 1 0 Median 1.1477 1.0511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45775000 22710000 23065000 43922000 21753000 22169000 1853200 957790 895430 0 0 0 0 0 0 0 0 0 0 0 0 1587 1497 1658 8188;8189 8476;8477 8476 2 AIVAESLNNTSIK VELNASDTRSKSSLKAIVAESLNNTSIKGF LKAIVAESLNNTSIKGFYSNGAASSVSTKH K A I I K G 2 0 2 0 0 0 1 0 0 2 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1358.7405 P35251;H0Y8U4 P35251 688 700 RFC1 Replication factor C subunit 1 yes no 2 5.6126E-05 142 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.93876 0.94932 25.493 6 Median 1.002 0.96801 16.692 2 2 Median 1.1301 1.006 37.824 2 0 Median 0.98367 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7628 0.65369 NaN 1 1 Median 43769000 20247000 23522000 12238000 5188900 7049200 2716200 1022900 1693200 26939000 12963000 13975000 0 0 0 0 0 0 1875700 1071500 804140 1588 2239 1659 8190;8191;8192;8193;8194;8195 8478;8479;8480;8481;8482;8483 8481 6 AIVAGDQNVEYK CTTREDSPKCKGCFKAIVAGDQNVEYKGTV CFKAIVAGDQNVEYKGTVWHKDCFTCSNCK K A I Y K G 2 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1305.6565 Q5JXI8 Q5JXI8 107 118 FHL1 no no 2 3.3934E-06 150.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 7 9 3 4 1 2 1.2223 1.0869 16.827 25 Plateau 1.1957 1.1077 17.687 7 0 Median 1.1457 0.96786 17.043 8 0 Median 1.2588 1.2177 4.7876 3 0 Median 1.0912 0.92129 3.5962 4 1 Median 0.87286 0.86502 NaN 1 0 Median 1.2684 1.0438 10.208 2 0 Median 1270900000 563250000 707610000 284880000 118950000 165930000 494220000 224790000 269430000 277230000 121500000 155730000 202710000 92227000 110490000 2950300 1691900 1258300 8877900 4096800 4781100 1589 3060 1660 8196;8197;8198;8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221 8484;8485;8486;8487;8488;8489;8490;8491;8492;8493;8494;8495;8496;8497;8498;8499;8500;8501;8502;8503;8504;8505;8506;8507;8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518;8519;8520;8521;8522;8523;8524 8520 40 AIVAGDQNVEYKGTVWHK CTTREDSPKCKGCFKAIVAGDQNVEYKGTV AGDQNVEYKGTVWHKDCFTCSNCKQVIGTG K A I H K D 2 0 1 1 0 1 1 2 1 1 0 2 0 0 0 0 1 1 1 3 0 0 18 1 2014.0272 Q5JXI8 Q5JXI8 107 124 FHL1 no no 3 1.6741E-07 85.619 By MS/MS 1 1.1922 1.1576 NaN 1 Median 1.1922 1.1576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15077000 6991700 8084900 15077000 6991700 8084900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1590 3060 1661 8222 8525 8525 1 AIVAIENPADVSVISSR INLKRTWEKLLLAARAIVAIENPADVSVIS VAIENPADVSVISSRNTGQRAVLKFAAATG R A I S R N 3 1 1 1 0 0 1 0 0 3 0 0 0 0 1 3 0 0 0 3 0 0 17 0 1739.9418 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 64 80 RPSA 40S ribosomal protein SA yes no 2;3 1.8469E-32 204.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 7 6 4 5 3 0.9361 0.86514 16.826 31 Median 0.89 0.87956 7.7782 6 0 Median 0.99244 0.84894 13.135 7 0 Median 0.92176 0.92423 10.1 6 2 Median 1.0546 0.88369 3.4498 4 0 Median 0.89242 0.94674 18.162 5 0 Median 0.96419 0.81548 28.82 3 0 Plateau 566480000 281690000 284800000 386120000 193810000 192310000 61907000 29807000 32099000 80836000 39797000 41039000 15972000 7588500 8383700 18967000 9297300 9669600 2679400 1382600 1296800 1591 232 1662 8223;8224;8225;8226;8227;8228;8229;8230;8231;8232;8233;8234;8235;8236;8237;8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253 8526;8527;8528;8529;8530;8531;8532;8533;8534;8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552;8553;8554;8555;8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566;8567;8568;8569;8570;8571 8528 45 AIVDGNLK FLDRESIKLVSIDSKAIVDGNLKLILGLIW LVSIDSKAIVDGNLKLILGLIWTLILHYSI K A I L K L 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 828.47052 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 128 135 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.004297 82.386 By matching By MS/MS 1 2 1.1208 0.99678 5.911 3 Plateau 0.8883 0.88638 NaN 1 0 Median 1.0852 0.96208 5.0105 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17493000 8590600 8902500 678380 391860 286520 16815000 8198800 8616000 0 0 0 0 0 0 0 0 0 0 0 0 1592 2088;3120;1664;2871 1663 8254;8255;8256 8572;8573 8573 2 AIVEFLSNLAR TNVRIWKVEKGPDGKAIVEFLSNLARHTKA PDGKAIVEFLSNLARHTKAVNVVRFSPTGE K A I A R H 2 1 1 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1231.6925 Q13112 Q13112 54 64 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.0063927 44.318 By MS/MS By matching By MS/MS By matching 2 1 4 2 1.0927 1.0435 20.165 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4008 1.4051 31.528 2 0 Median 1.1932 1.0032 NaN 1 0 Median 1.0408 1.0774 13.591 4 0 Median 1.1706 0.99434 2.2494 2 0 Median 24101000 11242000 12858000 0 0 0 0 0 0 6950400 3166900 3783500 634900 287020 347880 9841400 4818200 5023100 6674300 2970300 3704000 1593 2786 1664 8257;8258;8259;8260;8261;8262;8263;8264;8265 8574;8575;8576 8575 3 AIVFRPFKGEVVDAVVTQVNK IQPGRGFVLYPVKYKAIVFRPFKGEVVDAV FKGEVVDAVVTQVNKVGLFTEIGPMSCFIS K A I N K V 2 1 1 1 0 1 1 1 0 1 0 2 0 2 1 0 1 0 0 6 0 0 21 2 2315.3002 P62487 P62487 74 94 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes yes 3;4 6.2674E-12 69.737 By MS/MS By matching 2 2 0.70474 0.76381 42.837 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70474 0.81186 12.37 2 0 Median 0.63823 0.52021 58.06 2 0 Median 21411000 11524000 9886600 0 0 0 0 0 0 0 0 0 0 0 0 19896000 10661000 9234700 1514900 862960 651960 1594 2590 1665 8266;8267;8268;8269 8577;8578;8579;8580 8579 4 AIVHAVGQELQVTGPFNLQLIAK TPPQDITAKTLERIKAIVHAVGQELQVTGP ELQVTGPFNLQLIAKDDQLKVIECNVRVSR K A I A K D 3 0 1 0 0 3 1 2 1 2 3 1 0 1 1 0 1 0 0 3 0 0 23 0 2445.3744 F8VPD4;P27708 F8VPD4 1121 1143 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 1.3279E-07 41.257 By MS/MS 2 0.91561 0.81277 9.0109 2 Median NaN NaN NaN 0 0 Median 0.91561 0.81277 9.0109 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7625300 4019400 3605900 0 0 0 7625300 4019400 3605900 0 0 0 0 0 0 0 0 0 0 0 0 1595 1057 1666 8270;8271 8581;8582;8583 8582 3 AIVHDNKDGTYAVTYIPDK LLAVQITDQEGKPKRAIVHDNKDGTYAVTY DNKDGTYAVTYIPDKTGRYMIGVTYGGDDI R A I D K T 2 0 1 3 0 0 0 1 1 2 0 2 0 0 1 0 2 0 2 2 0 0 19 1 2119.0586 O75369;E7EN95 O75369 1566 1584 FLNB Filamin-B yes no 2;3;4 3.966E-18 135.81 By MS/MS By MS/MS By matching By matching 4 4 1 1 0.89524 0.87039 17.119 10 Median 0.84038 0.86123 19.907 4 0 Median 0.98717 0.94265 9.4876 4 1 Median 0.644 0.74308 NaN 1 0 Median 0.68591 0.69685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122740000 59795000 62948000 37040000 19156000 17884000 80110000 37207000 42902000 4485100 2883900 1601200 1107700 547430 560280 0 0 0 0 0 0 1596 1664 1667 8272;8273;8274;8275;8276;8277;8278;8279;8280;8281 8584;8585;8586;8587;8588;8589;8590;8591;8592;8593 8588 10 AIVHDNKDGTYAVTYIPDKTGR LLAVQITDQEGKPKRAIVHDNKDGTYAVTY DGTYAVTYIPDKTGRYMIGVTYGGDDIPLS R A I G R Y 2 1 1 3 0 0 0 2 1 2 0 2 0 0 1 0 3 0 2 2 0 0 22 2 2433.2288 O75369;E7EN95 O75369 1566 1587 FLNB Filamin-B yes no 4;5 2.841E-12 67.251 By MS/MS By matching 4 1 0.98922 1.0765 10.864 5 Median 0.99937 1.0786 12.533 4 1 Median NaN NaN NaN 0 0 Median 0.77984 1.0303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60499000 29621000 30879000 51595000 26096000 25499000 0 0 0 8904500 3525100 5379400 0 0 0 0 0 0 0 0 0 1597 1664 1668 8282;8283;8284;8285;8286 8594;8595;8596;8597 8595 4 AIVNHPSAALMALR QPTVGGTSSTPRAQKAIVNHPSAALMALRR KAIVNHPSAALMALRRGSRNLVFRDFTDEK K A I L R R 4 1 1 0 0 0 0 0 1 1 2 0 1 0 1 1 0 0 0 1 0 0 14 0 1462.8079 Q68CP9;F8WCU9;F8W108;F8VWP4;A0A087WY37 Q68CP9 1732 1745 ARID2 AT-rich interactive domain-containing protein 2 yes no 2;3 3.2351E-44 178.46 By MS/MS By matching 3 2 0.93825 0.82188 17.775 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69739 0.76011 24.625 3 1 Median 0.97877 0.84141 3.3217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28329000 17505000 10824000 0 0 0 0 0 0 27475000 17100000 10375000 853560 404530 449030 0 0 0 0 0 0 1598 3122 1669 8287;8288;8289;8290;8291 8598;8599;8600 8600 3 AIVNVIGMHK EEYPEVLGSILGALKAIVNVIGMHKMTPPI LGALKAIVNVIGMHKMTPPIKDLLPRLTPI K A I H K M 1 0 1 0 0 0 0 1 1 2 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1080.6114 O75533 O75533 999 1008 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0014615 83.265 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 0.85602 0.78276 42.844 8 Median 0.72174 0.70272 NaN 1 0 Median 0.41162 0.34739 NaN 1 0 Median 1.0946 1.1672 NaN 1 1 Median 1.222 1.0372 24.554 2 1 Median 0.6392 0.65019 NaN 1 0 Median 0.93909 0.77898 45.096 2 2 Median 70458000 41527000 28931000 5883500 3882400 2001100 17550000 11314000 6236700 19009000 8749500 10260000 4673700 2122300 2551400 20660000 14002000 6657500 2681500 1456800 1224600 1599 1683 1670;1671 8292;8293;8294;8295;8296;8297;8298;8299 8601;8602;8603;8604;8605;8606;8607 8601 542 7 AIVPLEAR KEAAMEAEIKAARERAIVPLEARMKQFKDM IKAARERAIVPLEARMKQFKDMLLERGVSA R A I A R M 2 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 8 0 867.5178 O14776;G3V220 O14776 655 662 TCERG1 Transcription elongation regulator 1 yes no 2 0.0025421 107.43 By matching By MS/MS By MS/MS 1 1 1 0.85162 0.93604 13.329 3 Plateau 0.73441 0.73213 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85162 0.93604 NaN 1 0 Median 1.0677 0.90539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39359000 20471000 18888000 2799800 1687100 1112600 0 0 0 28637000 15166000 13471000 7922200 3618100 4304100 0 0 0 0 0 0 1600 1494 1672 8300;8301;8302 8608;8609;8610;8611 8608 4 AIVQLVNER NNHGHTAEQVTGGIKAIVQLVNERQPQARV VTGGIKAIVQLVNERQPQARVVVLGLLPRG K A I E R Q 1 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1040.5978 Q15102;M0R389 Q15102 119 127 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 9.3866E-05 147.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1144 0.99131 4.6086 4 Median 1.0044 0.95612 NaN 1 0 Median 1.2442 1.0525 NaN 1 0 Median 1.0027 0.96351 NaN 1 0 Median 1.2364 1.0199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117080000 56245000 60839000 87086000 42516000 44570000 20255000 8985300 11269000 8935400 4368300 4567100 807830 375180 432650 0 0 0 0 0 0 1601 2928 1673 8303;8304;8305;8306 8612;8613;8614;8615;8616;8617 8612 6 AIVQQWLEYR QANKEYLLGSTAEEKAIVQQWLEYRVTQVD TAEEKAIVQQWLEYRVTQVDGHSSKNDIHT K A I Y R V 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 10 0 1304.6877 O43324;D6RBD7;C9J1V9;H0YAL7;D6RCQ0 O43324 69 78 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.00038325 121.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.1546 1.0485 32.873 6 Median 1.5909 1.5186 42.891 2 0 Median 1.2262 1.0166 NaN 1 0 Median 1.1277 1.0813 NaN 1 0 Median 1.1208 0.92486 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99986 0.78712 NaN 1 0 Median 60474000 27986000 32488000 45320000 21023000 24297000 8531700 3761000 4770600 5540000 2677800 2862200 865040 406290 458750 0 0 0 216970 118080 98887 1602 1566 1674 8307;8308;8309;8310;8311;8312 8618;8619;8620;8621;8622;8623;8624;8625;8626 8622 9 AIVSSGTLGDR SKTNSQKGASSTWMKAIVSSGTLGDRMAAM TWMKAIVSSGTLGDRMAAMILLIQDDAVHT K A I D R M 1 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1074.5669 Q03701 Q03701 237 247 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.00011928 135.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.5774 1.4347 11.073 4 Median NaN NaN NaN 0 0 Median 1.6866 1.4336 NaN 1 0 Median 1.4214 1.5633 NaN 1 0 Median 1.6851 1.4358 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4765 1.2013 NaN 1 0 Median 14599000 5815500 8784000 0 0 0 3666200 1334300 2331800 7344800 3150100 4194700 1517100 582290 934830 0 0 0 2071400 748810 1322600 1603 2710 1675 8313;8314;8315;8316 8627;8628;8629;8630;8631 8628 5 AIVVTDGER HIASVLNAWPEDVIKAIVVTDGERILGLGD PEDVIKAIVVTDGERILGLGDLGCNGMGIP K A I E R I 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 9 0 958.50836 P48163 P48163 147 155 ME1 NADP-dependent malic enzyme yes yes 2 0.00078048 98.299 By MS/MS 1 1.042 0.90173 NaN 1 Median NaN NaN NaN 0 0 Median 1.042 0.90173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8246700 3415300 4831400 0 0 0 8246700 3415300 4831400 0 0 0 0 0 0 0 0 0 0 0 0 1604 2359 1676 8317 8632;8633 8632 2 AIVWGMQTR SLQGKSTTLFSRHTKAIVWGMQTRAVQGML FSRHTKAIVWGMQTRAVQGMLDFDYVCSRD K A I T R A 1 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 1 0 1 0 0 9 0 1060.5488 P53396 P53396 499 507 ACLY ATP-citrate synthase yes yes 2 0.00063785 107.9 By MS/MS By MS/MS 1 1 1.2885 1.1521 12.937 2 Median 1.3115 1.2625 NaN 1 0 Median 1.2659 1.0514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39157000 16504000 22653000 18163000 7231200 10932000 20993000 9272600 11721000 0 0 0 0 0 0 0 0 0 0 0 0 1605 2467 1677 8318;8319 8634;8635;8636 8635 3 AIWAALQTQTSNAAK NPAKEISYENTQISRAIWAALQTQTSNAAK AIWAALQTQTSNAAKNFITKMAKEGAAEAL R A I A K N 5 0 1 0 0 2 0 0 0 1 1 1 0 0 0 1 2 1 0 0 0 0 15 0 1572.826 Q9NYU2 Q9NYU2 813 827 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 4.3478E-19 182.28 By MS/MS 1 1.1015 1.054 NaN 1 Median 1.1015 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41713000 20159000 21554000 41713000 20159000 21554000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1606 4179 1678 8320 8637;8638 8638 2 AIWHAFTALDQDHSGK ______________________________ IWHAFTALDQDHSGKVSKSQLKVLSHNLCT K A I G K V 3 0 0 2 0 1 0 1 2 1 1 1 0 1 0 1 1 1 0 0 0 0 16 0 1795.8642 Q9UH65;E7EMB1;E9PJK8 Q9UH65 11 26 SWAP70 Switch-associated protein 70 yes no 3 0.0011977 34.302 By MS/MS 1 1.0839 1.0188 NaN 1 Median 1.0839 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11178000 7176600 4001000 11178000 7176600 4001000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1607 4270 1679 8321 8639 8639 1 AIWNVINWENVTER AYYLQYKNVRPDYLKAIWNVINWENVTERY KAIWNVINWENVTERYMACKK_________ K A I E R Y 1 1 3 0 0 0 2 0 0 2 0 0 0 0 0 0 1 2 0 2 0 0 14 0 1742.874 P04179 P04179 203 216 SOD2 Superoxide dismutase [Mn], mitochondrial yes yes 2 0.037674 25.437 By MS/MS By MS/MS By matching 2 1 1 1.1149 1.1474 12.799 4 Median 1.0557 1.0129 7.4216 2 0 Median 1.4835 1.2616 NaN 1 0 Median 1.1313 1.2333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10965000 5077200 5888300 9268700 4427600 4841100 1334400 513290 821110 362360 136270 226090 0 0 0 0 0 0 0 0 0 1608 1845 1680 8322;8323;8324;8325 8640;8641 8641 2 AIYAALSGNLK CWRMAEDELFNRYERAIYAALSGNLKQLLP RYERAIYAALSGNLKQLLPVCDTWEDTVWA R A I L K Q 3 0 1 0 0 0 0 1 0 1 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1119.6288 P57740;H0YG15 P57740 426 436 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.00019445 106.6 By MS/MS By MS/MS By matching By matching 2 2 1 3 1.2252 1.1357 30.243 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93753 1.0022 20.599 2 0 Median 1.2582 1.0964 13.498 2 0 Median 1.3454 1.3913 NaN 1 0 Median 1.4735 1.2177 45.85 3 0 Plateau 63903000 28491000 35412000 0 0 0 0 0 0 46913000 21662000 25251000 9995600 4093800 5901800 4351900 1546900 2805000 2642500 1188100 1454400 1609 2518 1681 8326;8327;8328;8329;8330;8331;8332;8333 8642;8643;8644 8642 3 AIYAYALQVFPSK DADSCVAHNALECARAIYAYALQVFPSKKS ARAIYAYALQVFPSKKSVWLRAAYFEKNHG R A I S K K 3 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 2 1 0 0 13 0 1469.7919 O94906 O94906 561 573 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00072904 66.621 By MS/MS By matching 2 2 0.92074 0.87629 12.594 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7992 0.79578 8.0346 2 0 Median 1.0976 0.96097 7.4519 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3001300 1691500 1309800 0 0 0 0 0 0 2619000 1518500 1100500 382210 172920 209290 0 0 0 0 0 0 1610 1735 1682 8334;8335;8336;8337 8645;8646 8646 2 AIYELAISQPR FAELETILGDIDRARAIYELAISQPRLDMP DRARAIYELAISQPRLDMPEVLWKSYIDFE R A I P R L 2 1 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1259.6874 Q5JY65;Q9BZJ0 Q5JY65 649 659 CRNKL1 Crooked neck-like protein 1 yes no 2 0.00015157 89.247 By MS/MS By matching 1 1 0.86191 0.80359 2.5385 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77557 0.78929 NaN 1 0 Median 0.95785 0.81814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12682000 7160700 5521000 0 0 0 0 0 0 12066000 6849900 5216100 615730 310830 304900 0 0 0 0 0 0 1611 3061 1683 8338;8339 8647;8648 8648 2 AIYFDGDFGQIVR LEGNFKGIVDLIEERAIYFDGDFGQIVRYG ERAIYFDGDFGQIVRYGEIPAELRAAATDH R A I V R Y 1 1 0 2 0 1 0 2 0 2 0 0 0 2 0 0 0 0 1 1 0 0 13 0 1499.7409 Q96RP9;F8WAU4;C9IZ01 Q96RP9 222 234 GFM1 Elongation factor G, mitochondrial yes no 2 0.00076922 78.655 By MS/MS By MS/MS 1 1 1.193 1.0893 36.379 2 Median 1.4643 1.4088 NaN 1 1 Median 0.97201 0.84221 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8425700 4064700 4361000 4265600 1577100 2688500 4160100 2487700 1672500 0 0 0 0 0 0 0 0 0 0 0 0 1612 3728 1684 8340;8341 8649;8650 8650 2 AIYHDLEQSIR EVQKHLDLSNVAGYKAIYHDLEQSIRAADA AGYKAIYHDLEQSIRAADAVEDLRWFRANH K A I I R A 1 1 0 1 0 1 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1343.6834 A0A0U1RR22;Q9UNF0 A0A0U1RR22 265 275 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2;3 3.361E-05 120.06 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 3 1 1.1997 1.1469 29.112 8 Median 1.1525 1.0907 6.5201 2 0 Median 0.64157 0.58268 NaN 1 0 Median 1.1908 1.188 NaN 1 0 Median 1.3736 1.1638 0.73348 3 0 Median 0.64191 0.64703 NaN 1 0 Median NaN NaN NaN 0 0 Median 68876000 31467000 37410000 35538000 16732000 18806000 2790800 1325600 1465200 14352000 6116100 8236400 13633000 5828100 7804700 2562500 1465500 1097000 0 0 0 1613 307 1685 8342;8343;8344;8345;8346;8347;8348;8349 8651;8652;8653;8654;8655;8656;8657;8658;8659 8656 9 AIYHLEAFVAK QMAAYYEHRLQLGSKAIYHLEAFVAKFMAL LGSKAIYHLEAFVAKFMALYKKFMEDGLEG K A I A K F 3 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 0 1 1 0 0 11 0 1260.6867 P40938 P40938 328 338 RFC3 Replication factor C subunit 3 yes yes 3 0.006936 33.088 By matching By MS/MS 1 2 1.1361 1.1781 23.005 3 Median 0.86291 0.80963 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2089 1.2038 3.0562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15177000 6833100 8343400 3084100 1341100 1743100 0 0 0 12092000 5492000 6600400 0 0 0 0 0 0 0 0 0 1614 2294 1686 8350;8351;8352 8660;8661;8662;8663 8661 4 AIYNNMK DDNFSTIVAAVEEGRAIYNNMKQFIRYLIS VAAVEEGRAIYNNMKQFIRYLISSNVGEVV R A I M K Q 1 0 2 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 7 0 852.41637 P16615;H7C5W9;O14983 P16615 751 757 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.07339 34.892 By MS/MS 2 1.4022 1.2282 8.4431 2 Median NaN NaN NaN 0 0 Median 1.4022 1.2282 8.4431 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4192200 1761300 2430900 0 0 0 4192200 1761300 2430900 0 0 0 0 0 0 0 0 0 0 0 0 1615 2031 1687 8353;8354 8664 8664 1 AIYQATYR SYDLEVEQAYDLARRAIYQATYRDAYSGGA AYDLARRAIYQATYRDAYSGGAVNLYHVRE R A I Y R D 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 8 0 984.50288 P28074 P28074 218 225 PSMB5 Proteasome subunit beta type-5 yes yes 2 0.00070426 151.51 By MS/MS By MS/MS 1 1 1.1367 1.0086 0.84435 2 Median 1.056 1.0026 NaN 1 0 Median 1.2235 1.0146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22909000 11219000 11690000 16529000 8315000 8214100 6379400 2903700 3475800 0 0 0 0 0 0 0 0 0 0 0 0 1616 2162 1688 8355;8356 8665;8666;8667;8668 8666 4 AIYQVYNALQEK GTDFFDKDGVMKDIRAIYQVYNALQEKVQA DIRAIYQVYNALQEKVQAVCADVEKSERVV R A I E K V 2 0 1 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 2 1 0 0 12 0 1438.7456 Q15018 Q15018 208 219 FAM175B BRISC complex subunit Abro1 yes yes 2 0.0054188 59.426 By MS/MS 2 1.1994 1.1295 2.5297 2 Median 1.1994 1.1295 2.5297 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11279000 4664900 6613600 11279000 4664900 6613600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1617 2913 1689 8357;8358 8669;8670 8670 2 AIYVEYGYHITK SFLATKNLSLSQQLKAIYVEYGYHITKASY QLKAIYVEYGYHITKASYFICHDQETIKKL K A I T K A 1 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 1 0 3 1 0 0 12 0 1455.7398 Q96G03 Q96G03 467 478 PGM2 Phosphoglucomutase-2 yes yes 2;3 0.0048913 74.162 By MS/MS By matching 2 1 1.115 0.96215 37.524 3 Median 1.1684 1.107 51.817 2 0 Median 1.115 0.96215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17719000 8068600 9650600 16439000 7435900 9002800 1280500 632680 647800 0 0 0 0 0 0 0 0 0 0 0 0 1618 3652 1690 8359;8360;8361 8671;8672 8671 1 AKAEAEHDEHYYNAISVTTSYNLAR NLGEAKKYFLASLDRAKAEAEHDEHYYNAI YYNAISVTTSYNLARLYEAMCEFHEAEKLY R A K A R L 5 1 2 1 0 0 3 0 2 1 1 1 0 0 0 2 2 0 3 1 0 0 25 1 2852.3365 Q6PD62 Q6PD62 481 505 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 4 2.3101E-17 69.071 By MS/MS 1 0.9049 1.0252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9049 1.0252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6903900 3572600 3331200 0 0 0 0 0 0 6903900 3572600 3331200 0 0 0 0 0 0 0 0 0 1619 3168 1691 8362 8673 8673 1 AKAGAGSATLSMAYAGAR ALTGRIQEAGTEVVKAKAGAGSATLSMAYA GAGSATLSMAYAGARFVFSLVDAMNGKEGV K A K A R F 7 1 0 0 0 0 0 3 0 0 1 1 1 0 0 2 1 0 1 0 0 0 18 1 1652.8304 P40926;G3XAL0 P40926 240 257 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2;3 1.4931E-14 117.07 By MS/MS 2 1.0525 1.0645 3.5686 2 Median 1.0525 1.0645 3.5686 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57182000 27183000 29999000 57182000 27183000 29999000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1620 2292 1692 8363;8364 8674;8675;8676;8677 8675 4 AKDAAFATLVSDR VRNNRLGSALSWSIRAKDAAFATLVSDRFL IRAKDAAFATLVSDRFLRDYCERGCFSDLD R A K D R F 4 1 0 2 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 13 1 1363.7096 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7 Q9BW27 493 505 NUP85 Nuclear pore complex protein Nup85 yes no 2;3 2.9461E-06 105.46 By MS/MS By matching By matching By matching 2 2 1 2 1.0945 1.0175 20.965 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0095 1.0728 11.403 2 0 Median 1.3391 1.2278 36.1 2 0 Median 0.74851 0.81644 NaN 1 0 Median 1.2686 1.0884 9.5315 2 0 Median 57720000 27270000 30451000 0 0 0 0 0 0 26680000 13260000 13420000 1792800 761230 1031500 10061000 5211300 4849400 19187000 8037700 11149000 1621 3861 1693 8365;8366;8367;8368;8369;8370;8371 8678;8679 8678 2 AKDDDDSDIPTAQR ELRKARAEAEDARQKAKDDDDSDIPTAQRK KAKDDDDSDIPTAQRKRFTRVEMARVLMER K A K Q R K 2 1 0 5 0 1 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 14 1 1545.6907 A0A087X2D8;O60271 A0A087X2D8 473 486 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 3.2147E-05 93.011 By MS/MS By MS/MS 3 5 0.98324 0.97823 8.0308 8 Median 0.88855 0.90545 5.673 3 0 Median 1.0593 0.9812 9.1028 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28474000 12952000 15522000 5601000 2665600 2935400 22873000 10286000 12587000 0 0 0 0 0 0 0 0 0 0 0 0 1622 134 1694 8372;8373;8374;8375;8376;8377;8378;8379 8680;8681;8682;8683;8684;8685;8686;8687;8688;8689;8690 8688 11 AKDELSAQAEVK AWMGEQELHMMGQEKAKDELSAQAEVKKHQ QEKAKDELSAQAEVKKHQVLEQALADYAQT K A K V K K 3 0 0 1 0 1 2 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1287.667 O15020 O15020 1617 1628 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 0.02649 40.589 By matching By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 1 1.1677 1.3066 19.69 11 Median 1.2456 1.3003 21.172 2 0 Median 1.1677 1.1096 36.655 3 0 Median 1.0092 1.1545 10.773 3 0 Median 1.4526 1.3519 3.7251 2 0 Median NaN NaN NaN 0 0 Median 1.5912 1.4481 NaN 1 0 Median 10067000 4615000 5452300 1253400 554630 698800 3384800 1616700 1768100 4292300 1979100 2313300 847500 353840 493670 0 0 0 289210 110760 178450 1623 1512 1695 8380;8381;8382;8383;8384;8385;8386;8387;8388;8389;8390 8691;8692;8693;8694 8693 4 AKDEQSAVSMLK AWMSEQELYMMSEEKAKDEQSAVSMLKKHQ EEKAKDEQSAVSMLKKHQILEQAVEDYAET K A K L K K 2 0 0 1 0 1 1 0 0 0 1 2 1 0 0 2 0 0 0 1 0 0 12 1 1305.6599 Q01082;A0A087WUZ3 Q01082 1621 1632 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.8462E-05 135.6 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 1.0931 1.0393 25.273 7 Median NaN NaN NaN 0 0 Median 1.2003 1.1555 1.5133 2 0 Median 1.5628 1.8084 NaN 1 1 Median 1.0001 0.94028 12.687 2 1 Median 0.971 1.0393 NaN 1 0 Median 0.95987 0.85656 NaN 1 0 Median 36266000 17626000 18640000 0 0 0 13658000 6508600 7149300 10173000 4677000 5496300 6812300 3611800 3200600 4062500 2040400 2022100 1559800 788010 771790 1624 2681 1696 8391;8392;8393;8394;8395;8396;8397 8695;8696;8697;8698;8699;8700;8701;8702;8703 8701 9 AKDEQSAVSMLKK AWMSEQELYMMSEEKAKDEQSAVSMLKKHQ EKAKDEQSAVSMLKKHQILEQAVEDYAETV K A K K K H 2 0 0 1 0 1 1 0 0 0 1 3 1 0 0 2 0 0 0 1 0 0 13 2 1433.7548 Q01082;A0A087WUZ3 Q01082 1621 1633 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00061007 49.929 By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 0.93404 1.0934 28.087 7 Median NaN NaN NaN 0 0 Median 1.1664 1.2767 40.758 2 0 Median 0.93331 1.0813 NaN 1 0 Median 1.1547 1.1703 NaN 1 0 Median 0.93404 1.0934 NaN 1 0 Median 0.94588 1.0013 49.408 2 0 Median 19694000 10201000 9493700 0 0 0 3406000 1800700 1605200 8914000 4532800 4381200 1151300 584860 566390 3423500 1879400 1544100 2799700 1402900 1396800 1625 2681 1697 8398;8399;8400;8401;8402;8403;8404 8704;8705;8706;8707 8707 4 AKDINQEVYNFLATAGAK HLIEAQVGGEKDLRRAKDINQEVYNFLATA INQEVYNFLATAGAKYGVGFWKPGSGIIHQ R A K A K Y 4 0 2 1 0 1 1 1 0 1 1 2 0 1 0 0 1 0 1 1 0 0 18 1 1952.0003 A2A274;Q99798 A2A274 143 160 ACO2 Aconitate hydratase, mitochondrial yes no 3 0.011153 22.646 By MS/MS By MS/MS By matching 1 1 1 1.2434 1.4441 24.608 3 Median 1.0503 1.0815 NaN 1 0 Median 1.8228 1.7645 NaN 1 0 Median 1.2434 1.4441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12796000 4830500 7966000 6672500 2855100 3817500 5382000 1654700 3727300 741950 320690 421270 0 0 0 0 0 0 0 0 0 1626 495 1698 8405;8406;8407 8708;8709 8709 2 AKDIVPGDIVEIAVGDKVPADIR GKVYRQDRKSVQRIKAKDIVPGDIVEIAVG IVEIAVGDKVPADIRLTSIKSTTLRVDQSI K A K I R L 3 1 0 4 0 0 1 2 0 4 0 2 0 0 2 0 0 0 0 4 0 0 23 2 2389.3217 P16615 P16615 142 164 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes yes 3 3.7491E-12 60.278 By matching By MS/MS 2 1 0.90915 0.9686 21.468 3 Median 0.89837 0.96355 30.357 2 0 Median 0.90915 0.9686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11871000 5978700 5892500 3435900 1725500 1710400 8435300 4253200 4182000 0 0 0 0 0 0 0 0 0 0 0 0 1627 2031 1699 8408;8409;8410 8710 8710 1 AKDLQDELAGNSEQR ERQEQIKQRTKLELKAKDLQDELAGNSEQR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K A K Q R K 2 1 1 2 0 2 2 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1672.8016 Q9UQE7 Q9UQE7 309 323 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.0653E-08 114.82 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.8328 0.94166 8.6756 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8328 0.94363 0.3289 2 0 Median 1.1685 1.1229 NaN 1 0 Median 0.79499 0.88866 2.4645 2 1 Median 1.083 0.94187 NaN 1 0 Median 31344000 16906000 14438000 0 0 0 0 0 0 16475000 8146900 8328100 2912200 1420200 1492100 9797300 6314100 3483200 2159400 1025200 1134300 1628 4362 1700 8411;8412;8413;8414;8415;8416 8711;8712;8713;8714 8711 4 AKDPFAHLPK EEMDECEQALAAEPKAKDPFAHLPKSTFVL AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE K A K P K S 2 0 0 1 0 0 0 0 1 0 1 2 0 1 2 0 0 0 0 0 0 0 10 1 1122.6186 P26641 P26641 276 285 EEF1G Elongation factor 1-gamma yes yes 2 0.0016704 123.5 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 2 0.83827 0.80199 16.687 9 Median 0.84257 0.80199 NaN 1 0 Median 0.86676 0.81454 NaN 1 0 Median 0.91307 0.95108 12.218 3 0 Median 0.73423 0.71542 15.131 2 0 Median NaN NaN NaN 0 0 Median 0.75177 0.65405 4.5134 2 0 Median 196100000 104420000 91673000 20460000 10837000 9622700 3276400 1654700 1621700 22238000 11056000 11182000 134660000 71975000 62688000 0 0 0 15460000 8901000 6559200 1629 2149 1701 8417;8418;8419;8420;8421;8422;8423;8424;8425 8715;8716;8717;8718;8719;8720;8721;8722;8723 8717 9 AKEALELTDTGLLSGSEER GKFGRLKDDREKCAKAKEALELTDTGLLSG LELTDTGLLSGSEERVQVALEELQDLKGVW K A K E R V 2 1 0 1 0 0 4 2 0 0 4 1 0 0 0 2 2 0 0 0 0 0 19 1 2018.0168 Q14204 Q14204 1300 1318 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 2.1811E-17 101.36 By MS/MS By matching 2 2 0.91896 0.99736 14.46 4 Median 0.91896 0.96254 5.9144 2 1 Median NaN NaN NaN 0 0 Median 0.96013 1.1288 18.395 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74866000 37271000 37594000 54664000 27422000 27242000 0 0 0 20202000 9849800 10352000 0 0 0 0 0 0 0 0 0 1630 2865 1702 8426;8427;8428;8429 8724;8725 8725 2 AKEALIAASETLK IYLSRHNTAVSQLTKAKEALIAASETLKER TKAKEALIAASETLKERKAAIRDIEGKLPQ K A K L K E 4 0 0 0 0 0 2 0 0 1 2 2 0 0 0 1 1 0 0 0 0 0 13 1 1343.766 Q9NTJ3;E9PD53 Q9NTJ3 523 535 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 2.4658E-06 107.18 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.0758 1.0797 10.846 6 Median 1.1254 1.0952 3.1618 2 0 Median 1.1827 1.1524 NaN 1 0 Median 0.84327 0.96723 16.707 2 0 Median 1.0472 0.98025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28648000 14472000 14176000 16491000 8230400 8260300 1131200 606510 524720 9491900 4977600 4514400 1534200 657350 876840 0 0 0 0 0 0 1631 4108 1703 8430;8431;8432;8433;8434;8435 8726;8727;8728 8727 3 AKEALIAASETLKER IYLSRHNTAVSQLTKAKEALIAASETLKER AKEALIAASETLKERKAAIRDIEGKLPQTE K A K E R K 4 1 0 0 0 0 3 0 0 1 2 2 0 0 0 1 1 0 0 0 0 0 15 2 1628.9097 Q9NTJ3;E9PD53 Q9NTJ3 523 537 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0061749 43.454 By MS/MS By matching 1 1 0.80236 0.88059 13.4 2 Median 0.75773 0.80098 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84961 0.96811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16955000 9383100 7572200 11751000 7073500 4677800 0 0 0 5204100 2309600 2894500 0 0 0 0 0 0 0 0 0 1632 4108 1704 8436;8437 8729 8729 0 AKEAQDDLVK ARRRKEDEVEEWQHRAKEAQDDLVKTKEEL EWQHRAKEAQDDLVKTKEELHLVMTAPPPP R A K V K T 2 0 0 2 0 1 1 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1115.5823 P15311;E7EQR4 P15311 449 458 EZR Ezrin yes no 2 0.016679 56.432 By MS/MS 1 1.1553 1.281 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1553 1.281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17059000 7457200 9601700 0 0 0 0 0 0 17059000 7457200 9601700 0 0 0 0 0 0 0 0 0 1633 879 1705 8438 8730 8730 1 AKEEASAMEEEMALAEEQLR SVKQAGKSRQENRRRAKEEASAMEEEMALA SAMEEEMALAEEQLRARRQEQEKRSPLGSV R A K L R A 5 1 0 0 0 1 7 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 20 1 2264.0301 Q92620;H3BMS7 Q92620 1165 1184 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 3 0.068685 7.9922 By MS/MS 1 1.2796 1.4618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2796 1.4618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1279500 567400 712060 0 0 0 0 0 0 1279500 567400 712060 0 0 0 0 0 0 0 0 0 1634 3546 1706 8439 8731 8731 1 AKEEEGVPDEEGWVK FMEAYDQKIAEEEAKAKEEEGVPDEEGWVK AKEEEGVPDEEGWVKVTRRGRRPVLPRTEA K A K V K V 1 0 0 1 0 0 5 2 0 0 0 2 0 0 1 0 0 1 0 2 0 0 15 1 1700.7893 Q9Y3A4;Q9NSQ0 Q9Y3A4 191 205 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 3 0.0097753 35.091 By MS/MS 1 0.89981 0.93937 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89981 0.93937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12725000 6198500 6527000 0 0 0 0 0 0 12725000 6198500 6527000 0 0 0 0 0 0 0 0 0 1635 4412 1707 8440 8732 8732 1 AKEEQQDDTVYMGK VPTDFATFPSSAFLRAKEEQQDDTVYMGKV RAKEEQQDDTVYMGKVTFSCAAGFGQRHRL R A K G K V 1 0 0 2 0 2 2 1 0 0 0 2 1 0 0 0 1 0 1 1 0 0 14 1 1640.7352 E7EX90;Q14203;E7EWF7 E7EX90 1212 1225 DCTN1 Dynactin subunit 1 yes no 2;3 0.00011578 144.65 By MS/MS 2 1.0067 0.93754 4.7342 2 Median NaN NaN NaN 0 0 Median 1.0067 0.93754 4.7342 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9957300 4650600 5306700 0 0 0 9957300 4650600 5306700 0 0 0 0 0 0 0 0 0 0 0 0 1636 906 1708 8441;8442 8733;8734;8735;8736 8736 4 AKEFTNVYIK RFKSRKEREAELGARAKEFTNVYIKNFGED ELGARAKEFTNVYIKNFGEDMDDERLKDLF R A K I K N 1 0 1 0 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 1 0 0 10 1 1211.655 B1ANR0;Q13310;H0YCC8;H0Y5F5;P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YBN4 P11940 187 196 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 2;3 0.0010046 120.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 1 3 3 5 1.1498 1.0905 22.517 21 Median 1.1155 1.1127 3.832 4 0 Median 1.1498 1.1034 18.044 5 0 Median 1.2922 1.4442 NaN 1 0 Median 1.0984 1.0143 28.991 3 0 Median 1.4542 1.6274 29.62 3 0 Median 1.198 1.0678 19.97 5 1 Median 176130000 82726000 93400000 61375000 29345000 32030000 49730000 24537000 25192000 8958700 4097800 4860900 4617200 2275800 2341400 24796000 9460200 15335000 26649000 13009000 13640000 1637 1973;576;1151 1709 8443;8444;8445;8446;8447;8448;8449;8450;8451;8452;8453;8454;8455;8456;8457;8458;8459;8460;8461;8462;8463 8737;8738;8739;8740;8741;8742;8743;8744;8745;8746;8747;8748;8749;8750;8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764 8743 28 AKEGVVAAAEK ______________________________ GLSKAKEGVVAAAEKTKQGVAEAAGKTKEG K A K E K T 4 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 2 0 0 11 1 1071.5924 P37840;E7EPV7;H6UYS7;D6RA31 P37840 11 21 SNCA Alpha-synuclein yes no 2 0.000545 132.32 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 7 2 4 1 2 2 0.85936 0.84221 109.65 18 Median 0.85683 0.80239 23.302 7 0 Median 0.90905 0.81142 24.85 2 0 Median 0.87512 0.9103 102.86 4 0 Median 1.5245 1.3575 NaN 1 0 Median 0.12374 0.10693 251.66 2 0 Median 1.6812 1.4993 130.87 2 0 Median 64377000 31324000 33053000 25247000 12645000 12602000 32050000 14484000 17566000 4003300 2147300 1856000 191730 77612 114120 2085700 1720900 364830 799160 248340 550830 1638 2271 1710 8464;8465;8466;8467;8468;8469;8470;8471;8472;8473;8474;8475;8476;8477;8478;8479;8480;8481 8765;8766;8767;8768;8769;8770;8771;8772;8773 8769 9 AKEGVVYVEVR REAIKRIAYEFVEMKAKEGVVYVEVRYSPH VEMKAKEGVVYVEVRYSPHLLANSKVEPIP K A K V R Y 1 1 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 1 4 0 0 11 1 1247.6874 F5GXW0;P00813;F5GWI4 F5GXW0 91 101 ADA Adenosine deaminase yes no 3 0.0053077 36.303 By MS/MS 1 1.0035 1.0749 NaN 1 Median 1.0035 1.0749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2459600 1390500 1069100 2459600 1390500 1069100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1639 1008 1711 8482 8774;8775 8774 2 AKEILQEEEDLAEIVQLVGK YYDKHFTEFVPLRTKAKEILQEEEDLAEIV QEEEDLAEIVQLVGKASLAETDKITLEVAK K A K G K A 2 0 0 1 0 2 5 1 0 2 3 2 0 0 0 0 0 0 0 2 0 0 20 1 2253.2104 P38606 P38606 479 498 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 0.02624 22.01 By MS/MS By MS/MS 1 2 1.1258 1.0745 6.1688 3 Median 1.1258 1.0745 NaN 1 0 Median 1.1402 1.0716 8.7212 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930900 2817500 3113400 1546500 723550 822990 4384400 2094000 2290400 0 0 0 0 0 0 0 0 0 0 0 0 1640 2276 1712 8483;8484;8485 8776;8777 8776 2 AKEISNLNQLIEEFKK FHKAQEIYEKNLDEKAKEISNLNQLIEEFK KEISNLNQLIEEFKKNADNNSSAFTALSEE K A K K K N 1 0 2 0 0 1 3 0 0 2 2 3 0 1 0 1 0 0 0 0 0 0 16 2 1903.0415 Q14789;E7EU81;H0Y867 Q14789 715 730 GOLGB1 Golgin subfamily B member 1 yes no 3;4 0.0026896 28.212 By MS/MS 2 0.96662 1.1418 13.132 2 Median 0.96662 1.1418 13.132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10402000 4841900 5559900 10402000 4841900 5559900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1641 2900 1713 8486;8487 8778;8779 8779 2 AKELDPTNMTYITNQAAVYFEK YKKKDFDTALKHYDKAKELDPTNMTYITNQ NMTYITNQAAVYFEKGDYNKCRELCEKAIE K A K E K G 3 0 2 1 0 1 2 0 0 1 1 2 1 1 1 0 3 0 2 1 0 0 22 1 2546.2363 P31948 P31948 251 272 STIP1 Stress-induced-phosphoprotein 1 yes yes 3 0.018974 15.316 By MS/MS 1 0.99092 0.93165 NaN 1 Median 0.99092 0.93165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9077800 4088700 4989100 9077800 4088700 4989100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1642 2212 1714 8488 8780;8781 8781 2 AKELLGQGLLLR KDAHNALLDIQSSGRAKELLGQGLLLRSLQ SGRAKELLGQGLLLRSLQERNQEQEKVERR R A K L R S 1 1 0 0 0 1 1 2 0 0 5 1 0 0 0 0 0 0 0 0 0 0 12 1 1309.8082 Q99613;B5ME19 Q99613 642 653 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2;3 1.7585E-05 94.767 By MS/MS By MS/MS By matching By matching By matching By matching 3 2 3 1 1 1 1.2274 1.1864 12.417 11 Median 1.1234 1.1716 15.382 3 0 Median 1.2424 1.1715 1.7845 2 0 Median 1.0451 1.1877 15.534 3 0 Median 1.3565 1.3036 NaN 1 0 Median 1.2993 1.4422 NaN 1 0 Median 1.3176 1.1609 NaN 1 0 Median 52000000 24065000 27935000 35609000 16575000 19034000 6327500 2851800 3475600 7591900 3670900 3921000 523190 213690 309500 1518800 581850 936940 429000 171070 257930 1643 3757 1715 8489;8490;8491;8492;8493;8494;8495;8496;8497;8498;8499 8782;8783;8784;8785;8786 8783 5 AKEQEAEPEEQEEDSSSDPR ESSDEEDEEFQFIKKAKEQEAEPEEQEEDS AEPEEQEEDSSSDPRLRRLQNRISEDVEER K A K P R L 2 1 0 2 0 2 7 0 0 0 0 1 0 0 2 3 0 0 0 0 0 0 20 1 2288.9517 P55081 P55081 66 85 MFAP1 Microfibrillar-associated protein 1 yes yes 3 0.011136 21.398 By MS/MS 1 0.64165 0.66693 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64165 0.66693 NaN 1 0 Median NaN NaN NaN 0 0 Median 2796700 1891100 905540 0 0 0 0 0 0 0 0 0 0 0 0 2796700 1891100 905540 0 0 0 1644 2495 1716 8500 8787;8788 8788 2 AKESWEMNSEEK NAELKYELHLKSFEKAKESWEMNSEEKLEQ FEKAKESWEMNSEEKLEQSTIVKERGTVYF K A K E K L 1 0 1 0 0 0 4 0 0 0 0 2 1 0 0 2 0 1 0 0 0 0 12 1 1466.6348 Q02790 Q02790 255 266 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3 0.010343 27.33 By MS/MS By matching 1 1 0.8935 0.86681 16.962 2 Median NaN NaN NaN 0 0 Median 1.0379 0.97727 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76916 0.76884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1817300 853450 963860 0 0 0 1665900 772930 892930 0 0 0 151440 80514 70929 0 0 0 0 0 0 1645 2701 1717 8501;8502 8789 8789 1 AKESWEMNSEEKLEQSTIVK NAELKYELHLKSFEKAKESWEMNSEEKLEQ EMNSEEKLEQSTIVKERGTVYFKEGKYKQA K A K V K E 1 0 1 0 0 1 5 0 0 1 1 3 1 0 0 3 1 1 0 1 0 0 20 2 2365.1471 Q02790 Q02790 255 274 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3;4 9.4292E-09 72.086 By MS/MS By matching By matching By matching 2 1 1 1 0.82285 0.77896 21.054 5 Median 0.97409 0.94748 5.8537 2 0 Median 0.82285 0.77896 NaN 1 0 Median 0.61186 0.72297 NaN 1 0 Median 0.55148 0.5755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40842000 19836000 21007000 34854000 16063000 18791000 1875800 1287100 588770 3629300 2204400 1424900 483020 281640 201380 0 0 0 0 0 0 1646 2701 1718 8503;8504;8505;8506;8507 8790;8791;8792 8791 3 AKFEELNMDLFR ESFYEGEDFSETLTRAKFEELNMDLFRSTM LTRAKFEELNMDLFRSTMKPVQKVLEDSDL R A K F R S 1 1 1 1 0 0 2 0 0 0 2 1 1 2 0 0 0 0 0 0 0 0 12 1 1511.7442 P11021 P11021 325 336 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 2.9018E-05 117.7 By MS/MS By MS/MS By matching By MS/MS By matching 5 2 1 1 2 1.1745 1.1777 24.398 11 Median 1.1546 1.1686 9.1532 5 0 Median NaN NaN NaN 0 0 Median 1.0564 1.121 24.622 2 0 Median 1.5236 1.4846 NaN 1 0 Median 1.5292 1.6839 NaN 1 0 Median 1.1679 1.0386 52.296 2 0 Median 126050000 57444000 68608000 110500000 50725000 59777000 0 0 0 10901000 5046000 5855200 173120 62620 110500 4176200 1465700 2710500 299620 145160 154460 1647 1948 1719;1720 8508;8509;8510;8511;8512;8513;8514;8515;8516;8517;8518 8793;8794;8795;8796;8797;8798;8799;8800;8801;8802;8803 8795 723 11 AKFYPEDVSEELIQDITQR AQDVRKESPLLFKFRAKFYPEDVSEELIQD PEDVSEELIQDITQRLFFLQVKEGILNDDI R A K Q R L 1 1 0 2 0 2 3 0 0 2 1 1 0 1 1 1 1 0 1 1 0 0 19 1 2280.1274 P26038;V9GZ54 P26038 82 100 MSN Moesin yes no 3 3.5764E-08 62.765 By MS/MS By matching 1 1 0.85206 0.91037 1.8264 2 Median 0.90037 0.92221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80634 0.89869 NaN 1 0 Median NaN NaN NaN 0 0 Median 3042800 1529000 1513800 2643200 1330900 1312300 0 0 0 0 0 0 0 0 0 399580 198090 201500 0 0 0 1648 2139 1721 8519;8520 8804;8805;8806;8807 8807 4 AKGEIPEVAFMK NWDYTRSAQAFTHLKAKGEIPEVAFMK___ HLKAKGEIPEVAFMK_______________ K A K M K - 2 0 0 0 0 0 2 1 0 1 0 2 1 1 1 0 0 0 0 1 0 0 12 1 1318.6955 Q9UBU9;H0YDU0 Q9UBU9 608 619 NXF1 Nuclear RNA export factor 1 yes no 3 0.026274 23.092 By MS/MS 1 0.85794 0.96806 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85794 0.96806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4130200 1828900 2301300 0 0 0 0 0 0 4130200 1828900 2301300 0 0 0 0 0 0 0 0 0 1649 4249 1722 8521 8808 8808 1 AKGLEISGTFTHR GGYVAPKAVWLPAVKAKGLEISGTFTHRQG VKAKGLEISGTFTHRQGHIYMEMNFTNKAL K A K H R Q 1 1 0 0 0 0 1 2 1 1 1 1 0 1 0 1 2 0 0 0 0 0 13 1 1415.7521 A0A087X253;P63010 A0A087X253 696 708 AP2B1 AP-2 complex subunit beta yes no 3 0.0035961 49.929 By MS/MS 1 1.0528 1.093 NaN 1 Median 1.0528 1.093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2504500 1053500 1451000 2504500 1053500 1451000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1650 128 1723 8522 8809 8809 1 AKHDELTYF HENKPLTLSNYQTNKAKHDELTYF______ NYQTNKAKHDELTYF_______________ K A K Y F - 1 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 9 1 1122.5346 P04080;A0A1W2PQG6 P04080 90 98 CSTB Cystatin-B yes no 2 0.012278 70.919 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1478 0.99083 9.5953 4 Median 1.1411 1.0275 NaN 1 0 Median 1.1315 0.92738 NaN 1 0 Median 1.2056 1.1505 NaN 1 0 Median 1.1546 0.95543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152100000 69488000 82612000 59835000 26576000 33259000 74815000 34940000 39875000 17036000 7773200 9263200 412540 198340 214200 0 0 0 0 0 0 1651 1843 1724 8523;8524;8525;8526 8810;8811;8812;8813;8814;8815 8815 6 AKIELLGSYDPQK LRDLNRKSNQVKTCKAKIELLGSYDPQKQL CKAKIELLGSYDPQKQLIIEDPYYGNDSDF K A K Q K Q 1 0 0 1 0 1 1 1 0 1 2 2 0 0 1 1 0 0 1 0 0 0 13 1 1460.7875 P24666 P24666 112 124 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes yes 2;3 4.9645E-06 113.61 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.2027 1.0617 23.255 8 Median 1.0199 1.0161 1.2611 2 0 Median 1.1404 1.0084 7.0601 3 0 Median 1.5546 1.5833 5.148 2 0 Median 1.7632 1.5842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53410000 25129000 28281000 40689000 19505000 21184000 8373600 4029300 4344300 4043800 1484700 2559100 304200 109980 194220 0 0 0 0 0 0 1652 2125 1725 8527;8528;8529;8530;8531;8532;8533;8534 8816;8817;8818;8819;8820;8821;8822;8823;8824 8816 9 AKIQDKEGIPPDQQR ITLEVEPSDTIENVKAKIQDKEGIPPDQQR AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K A K Q R L 1 1 0 2 0 3 1 1 0 2 0 2 0 0 2 0 0 0 0 0 0 0 15 2 1721.906 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422;F5GZ39;J3QSA3 P0CG48 28 42 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 3;4 4.9176E-10 104.94 By matching By MS/MS By matching By MS/MS By MS/MS 2 4 3 4 4 0.75071 0.92672 19.286 17 Median 0.63154 1.1044 6.5346 2 0 Median 0.96204 1.013 13.194 4 0 Median 0.66189 0.80689 2.0794 3 0 Plateau 0.94763 1.0139 5.4929 4 0 Median 0.5753 0.67921 14.974 4 0 Median NaN NaN NaN 0 0 Median 62798000 34314000 28484000 493130 274450 218670 4283400 2305900 1977600 2231800 1347700 884140 37250000 19422000 17828000 18539000 10964000 7575400 0 0 0 1653 606 1726 8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551 8825;8826;8827;8828;8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839 8834 15 AKLDELSAK ALEYTIYNQELNETRAKLDELSAKRETSGE ELNETRAKLDELSAKRETSGEKSRQLRDAQ R A K A K R 2 0 0 1 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 9 1 973.54441 Q9UQE7 Q9UQE7 237 245 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.016739 64.42 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 0.89841 0.96576 28.882 7 Median NaN NaN NaN 0 0 Median 0.64308 0.57994 NaN 1 0 Median 0.8659 0.96384 42.403 2 0 Median 1.249 1.1898 NaN 1 0 Median 0.83267 0.91294 7.953 2 0 Median 1.2137 1.0979 NaN 1 0 Median 14803000 7591500 7211300 0 0 0 1623600 924170 699400 2971900 1386900 1585000 1137300 481490 655830 8009300 4354400 3655000 1060600 444530 616110 1654 4362 1727 8552;8553;8554;8555;8556;8557;8558 8840;8841;8842 8840 3 AKLDENSAFLQFNWK NGKVSDLEKAAAQRKAKLDENSAFLQFNWK AKLDENSAFLQFNWKADVVESWIGEKENSL K A K W K A 2 0 2 1 0 1 1 0 0 0 2 2 0 2 0 1 0 1 0 0 0 0 15 1 1809.905 A0A0D9SF54;A0A1B0GV13;Q13813 Q13813 1970 1984 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.067465 10.854 By matching By MS/MS 1 2 0.9778 1.1135 10.729 3 Median NaN NaN NaN 0 0 Median 1.336 1.2689 NaN 1 0 Median 0.93221 1.0687 5.8061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6732400 3311400 3421000 0 0 0 1131300 431900 699380 5601100 2879500 2721600 0 0 0 0 0 0 0 0 0 1655 264;2838 1728 8559;8560;8561 8843 8843 1 AKLDSSETTMVK AKVSQGVEDGPDTKRAKLDSSETTMVKKKV TKRAKLDSSETTMVKKKVVFCPVKEALEVD R A K V K K 1 0 0 1 0 0 1 0 0 0 1 2 1 0 0 2 2 0 0 1 0 0 12 1 1308.6595 Q9UBE0;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65 Q9UBE0 197 208 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed no no 2 0.0027648 74.162 By matching By MS/MS 1 1 1.0418 0.95935 18.405 2 Median 0.8995 0.84228 NaN 1 0 Median 1.2067 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4459000 2140900 2318100 1810400 972330 838050 2648700 1168600 1480100 0 0 0 0 0 0 0 0 0 0 0 0 1656 4237 1729 8562;8563 8844;8845 8844 2 AKLDVQFAGTAK GKPTHFTVLTKGAGKAKLDVQFAGTAKGEV AGKAKLDVQFAGTAKGEVVRDFEIIDNHDY K A K A K G 3 0 0 1 0 1 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 12 1 1247.6874 Q14315 Q14315 900 911 FLNC Filamin-C yes yes 2;3 1.5404E-29 208.17 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 4 1.1553 1.1127 69.065 12 Median 1.226 1.2672 35.961 4 0 Median 1.1205 1.0728 18.958 3 0 Median 1.4355 1.652 NaN 1 0 Median 1.2624 1.2285 122.43 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130150000 59137000 71016000 48573000 19665000 28908000 70961000 36189000 34773000 3187500 1260000 1927500 7431000 2023700 5407300 0 0 0 0 0 0 1657 2871 1730 8564;8565;8566;8567;8568;8569;8570;8571;8572;8573;8574;8575 8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861 8856 16 AKLEATLQEEAAIQQEHR QVKVAEVEGEQVDNKAKLEATLQEEAAIQQ EATLQEEAAIQQEHREKELQKRSEVAKDFE K A K H R E 4 1 0 0 0 3 4 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 18 1 2064.06 O95202 O95202 464 481 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 7.0013E-14 104.88 By MS/MS 1 1.2129 1.2462 NaN 1 Median 1.2129 1.2462 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13849000 6393300 7455400 13849000 6393300 7455400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1658 1754 1731 8576 8862 8862 1 AKLEEAILGSIGAR ERMNSLTFKKSKDMRAKLEEAILGSIGARQ RAKLEEAILGSIGARQEMVRRSRGQLGTYT R A K A R Q 3 1 0 0 0 0 2 2 0 2 2 1 0 0 0 1 0 0 0 0 0 0 14 1 1426.8144 Q96N67;A0A1B0GWE0 Q96N67 1394 1407 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.044271 47.288 By MS/MS 1 1.1362 1.3526 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1362 1.3526 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2289700 833590 1456100 0 0 0 0 0 0 2289700 833590 1456100 0 0 0 0 0 0 0 0 0 1659 3707 1732 8577 8863 8863 1 AKLEEHFKNQELR CLNNEHFEELGGILKAKLEEHFKNQELRQV LKAKLEEHFKNQELRQVKRQDEDYDEQVEE K A K L R Q 1 1 1 0 0 1 3 0 1 0 2 2 0 1 0 0 0 0 0 0 0 0 13 2 1640.8635 O00410;H0Y8C6 O00410 799 811 IPO5 Importin-5 yes no 4 0.02513 33.204 By MS/MS 1 0.95229 1.0824 NaN 1 Median 0.95229 1.0824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2842700 993210 1849500 2842700 993210 1849500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1660 1460 1733 8578 8864 8864 1 AKLEQLFQDEVAK KDSLLQRERFIEQEKAKLEQLFQDEVAKAQ EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K A K A K A 2 0 0 1 0 2 2 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1517.809 Q15149;H0YDN1 Q15149 2651 2663 PLEC Plectin yes no 2;3 7.4843E-06 161.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 3 1 3 1 1.2528 1.2292 12.899 13 Median 1.1263 1.225 19.167 3 0 Median 1.4574 1.3936 0.2257 3 0 Median 1.0831 1.2264 12.485 3 0 Plateau 1.3523 1.3738 NaN 1 0 Median 1.1988 1.2882 6.6297 2 0 Median 1.3223 1.18 NaN 1 0 Median 185020000 82804000 102210000 106210000 48533000 57674000 24633000 9962300 14671000 39206000 18242000 20964000 544380 246260 298120 13754000 5627400 8126300 673070 192560 480510 1661 2933 1734 8579;8580;8581;8582;8583;8584;8585;8586;8587;8588;8589;8590;8591;8592 8865;8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877 8867 13 AKLQELEGAVK DNARQQLERQNKELKAKLQELEGAVKSKFK KELKAKLQELEGAVKSKFKATISALEAKIG K A K V K S 2 0 0 0 0 1 2 1 0 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1184.6765 P35580 P35580 1799 1809 MYH10 Myosin-10 yes yes 2;3 0.0044619 61.78 By MS/MS By matching 2 1 0.8642 0.92179 15.579 2 Median 1.0438 1.0291 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7155 0.82564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11809000 4799400 7009200 7241800 2189500 5052200 0 0 0 4566800 2609800 1957000 0 0 0 0 0 0 0 0 0 1662 2245 1735 8593;8594;8595 8878;8879;8880 8879 3 AKLQIELGK LADARRALDDTARERAKLQIELGKCKAEHD DTARERAKLQIELGKCKAEHDQLLLNYAKK R A K G K C 1 0 0 0 0 1 1 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 9 1 998.61243 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 101 109 LMNB1 Lamin-B1 yes no 2 2.9559E-06 162.25 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 3 0.96579 1.0719 29.804 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0133 1.1397 NaN 1 0 Median 2.3459 2.2282 NaN 1 0 Median 0.8742 0.93027 7.4542 4 0 Median 1.5316 1.3679 25.108 3 0 Plateau 210420000 100450000 109970000 0 0 0 0 0 0 5378100 2776900 2601200 5102300 1483600 3618700 143000000 72778000 70221000 56940000 23412000 33529000 1663 2084 1736 8596;8597;8598;8599;8600;8601;8602;8603;8604 8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894;8895 8895 15 AKNEILDEVISLSQVTPK YPRLRELDRNELFEKAKNEILDEVISLSQV EILDEVISLSQVTPKHWEEILQQSLWERVS K A K P K H 1 0 1 1 0 1 2 0 0 2 2 2 0 0 1 2 1 0 0 2 0 0 18 1 1983.0888 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5 A0A2R8Y3X5 491 508 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 7.7817E-06 50.397 By matching By MS/MS By matching 1 3 1 0.83006 0.94375 16.746 5 Median 0.81106 0.86122 NaN 1 0 Median 1.3053 1.1359 21.026 3 0 Median 0.8281 0.94375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18450000 9538300 8911600 623280 403720 219570 17561000 9004600 8556800 265150 129930 135220 0 0 0 0 0 0 0 0 0 1664 357 1737 8605;8606;8607;8608;8609 8896;8897 8897 2 AKNTVVATGGYGR VIALCIEDGSIHRIRAKNTVVATGGYGRTY IRAKNTVVATGGYGRTYFSCTSAHTSTGDG R A K G R T 2 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 2 0 1 2 0 0 13 1 1292.6837 P31040;D6RFM5;A0A494C1T6 P31040 249 261 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 0.065792 13.119 By MS/MS 1 1.0895 1.1058 NaN 1 Median 1.0895 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1521300 706730 814590 1521300 706730 814590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1665 2200 1738 8610 8898 8898 1 AKPAMPQDSVPSPR SFSESRADEVAPAKKAKPAMPQDSVPSPRS KAKPAMPQDSVPSPRSLQGKSTTLFSRHTK K A K P R S 2 1 0 1 0 1 0 0 0 0 0 1 1 0 4 2 0 0 0 1 0 0 14 1 1479.7504 P53396 P53396 470 483 ACLY ATP-citrate synthase yes yes 2;3 5.12E-05 79.875 By MS/MS By MS/MS 1 2 0.77583 0.72391 3.1797 3 Median 0.67673 0.70402 NaN 1 0 Median 0.78745 0.7369 2.5159 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16212000 8804700 7406900 4054200 2088100 1966100 12157000 6716600 5440800 0 0 0 0 0 0 0 0 0 0 0 0 1666 2467 1739 8611;8612;8613 8899;8900;8901;8902;8903;8904;8905;8906 8904 8 AKPFLSNSLGGQDDTR RAAPTPGRALLVPPKAKPFLSNSLGGQDDT KPFLSNSLGGQDDTRGKGSLGPWGTGKIGE K A K T R G 1 1 1 2 0 1 0 2 0 0 2 1 0 1 1 2 1 0 0 0 0 0 16 1 1704.8431 A1X283 A1X283 804 819 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 3 0.027202 17.863 By MS/MS 2 0.84361 0.7912 57.553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84361 0.7912 57.553 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4513800 2262800 2251000 0 0 0 0 0 0 0 0 0 4513800 2262800 2251000 0 0 0 0 0 0 1667 494 1740 8614;8615 8907 8907 1 AKPLLLQLPIGEAK ASFKYAVESIREKLKAKPLLLQLPIGEAKT KAKPLLLQLPIGEAKTFKGVVDVVMKEKLL K A K A K T 2 0 0 0 0 1 1 1 0 1 4 2 0 0 2 0 0 0 0 0 0 0 14 1 1489.9232 Q969S9;D6RAL1 Q969S9 217 230 GFM2 Ribosome-releasing factor 2, mitochondrial yes no 3 0.072199 11.105 By MS/MS 1 1.0604 1.0985 NaN 1 Median 1.0604 1.0985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1385300 731260 654090 1385300 731260 654090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1668 3587 1741 8616 8908 8908 1 AKPLTDQEK ______________________________ ______________________________ M A K E K R 1 0 0 1 0 1 1 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 9 1 1028.5502 P06737;E9PK47 P06737 2 10 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.0027319 56.378 By matching By MS/MS 1 1 0.93293 0.92041 3.4176 2 Median 0.89299 0.89844 NaN 1 0 Median 0.97464 0.94293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3228000 1392700 1835300 284240 138590 145650 2943800 1254100 1689700 0 0 0 0 0 0 0 0 0 0 0 0 1669 1874 1742 8617;8618 8909;8910 8910 2 AKPPPGGGEQEPPPPPAPQDVEMK ______________________________ QEPPPPPAPQDVEMKEEAATGGGSTGEADG K A K M K E 2 0 0 1 0 2 3 3 0 0 0 2 1 0 9 0 0 0 0 1 0 0 24 1 2449.1948 O43242;F5H8K4 O43242 15 38 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 3 0.0027352 31.775 By MS/MS 1 0.40182 0.37741 NaN 1 Median NaN NaN NaN 0 0 Median 0.40182 0.37741 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1443800 1026800 416970 0 0 0 1443800 1026800 416970 0 0 0 0 0 0 0 0 0 0 0 0 1670 1560 1743 8619 8911 8911 1 AKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGK ______________________________ EAATGGGSTGEADGKTAAAAAEHSQRELDT K A K G K T 5 0 0 2 0 2 6 8 0 0 0 3 1 0 9 1 2 0 0 1 0 0 40 2 3866.7905 O43242 O43242 15 54 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 4 1.8859E-16 57.528 By MS/MS 1 0.18531 0.1891 NaN 1 Median 0.18531 0.1891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15488000 12274000 3213900 15488000 12274000 3213900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1671 1560 1744 8620 8912 8912 1 AKPQVVVAPVLMSK ______________________________ MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS M A K S K L 2 0 0 0 0 1 0 0 0 0 1 2 1 0 2 1 0 0 0 4 0 0 14 1 1465.8691 D6RJF2;D6RD97;D6RJ02 D6RJF2 2 15 PAIP1 yes no 2 2.7205E-05 84.479 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 0.82335 0.80462 18.725 7 Median 0.79164 0.74926 2.7872 2 0 Median 0.8838 0.80462 NaN 1 0 Median 0.74373 0.81046 NaN 1 0 Median 0.92252 0.82146 NaN 1 0 Median 1.0064 1.056 NaN 1 0 Median 0.65484 0.56025 NaN 1 0 Median 23747000 13196000 10551000 17894000 9881700 8012600 513090 257640 255450 3830400 2280500 1549900 705780 361720 344050 558820 264760 294060 244280 149390 94892 1672 831 1745 8621;8622;8623;8624;8625;8626;8627 8913;8914;8915;8916 8914 4 AKPTGARPSALDR KVRQSLQQQHHKEAKAKPTGARPSALDRFV AKAKPTGARPSALDRFVR____________ K A K D R F 3 2 0 1 0 0 0 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 2 1338.7368 O15213 O15213 595 607 WDR46 WD repeat-containing protein 46 yes yes 3 0.067305 13.137 By MS/MS 1 0.67002 0.7838 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67002 0.7838 NaN 1 0 Median NaN NaN NaN 0 0 Median 540340 197130 343210 0 0 0 0 0 0 0 0 0 0 0 0 540340 197130 343210 0 0 0 1673 1531 1746 8628 8917 8917 1 AKPVLEDLR YHAKASEQLKALGEKAKPVLEDLRQGLLPV KALGEKAKPVLEDLRQGLLPVLESLKVSIL K A K L R Q 1 1 0 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1039.6026 CON__P15497 CON__P15497 229 237 yes yes 2 0.052173 60.91 By MS/MS 1 0.0089878 0.0093796 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0089878 0.0093796 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9766000 9693500 72524 0 0 0 0 0 0 9766000 9693500 72524 0 0 0 0 0 0 0 0 0 + 1674 758 1747 8629 8918 8918 1 AKPYHLSTSSVFR GKILPRVHRKLAIERAKPYHLSTSSVFRLV ERAKPYHLSTSSVFRLVSRPKPLSAVPKQV R A K F R L 1 1 0 0 0 0 0 0 1 0 1 1 0 1 1 3 1 0 1 1 0 0 13 1 1491.7834 Q8WYP5 Q8WYP5 1016 1028 AHCTF1 Protein ELYS yes yes 3 0.00031532 61.212 By MS/MS By MS/MS 2 1 0.89639 1.0386 95.024 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39957 0.46293 114.27 2 0 Median 1.1402 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17557000 10904000 6652700 0 0 0 0 0 0 15513000 10202000 5311100 2043900 702340 1341500 0 0 0 0 0 0 1675 3524 1748 8630;8631;8632 8919;8920;8921 8919 3 AKQDVIEVIEK ADSKTYQDIQNTIKKAKQDVIEVIEKAHNN TIKKAKQDVIEVIEKAHNNELEPTPGNTLR K A K E K A 1 0 0 1 0 1 2 0 0 2 0 2 0 0 0 0 0 0 0 2 0 0 11 1 1270.7133 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 709 719 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2;3 0.00065442 87.298 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 3 2 0.87654 0.93035 30.193 9 Median NaN NaN NaN 0 0 Median 0.87654 0.85537 NaN 1 0 Median 0.92171 1.0638 32.526 2 0 Median 1.5516 1.4483 NaN 1 0 Median 0.86512 0.93035 16.432 3 0 Median 1.3285 1.197 62.518 2 0 Median 30341000 15224000 15116000 0 0 0 911720 530850 380880 9566400 4450300 5116100 911560 424760 486800 17905000 9304200 8600300 1046500 514150 532330 1676 486 1749 8633;8634;8635;8636;8637;8638;8639;8640;8641 8922;8923;8924;8925;8926;8927 8926 6 AKQTLENERGELANEVK EQLEQTKRVKANLEKAKQTLENERGELANE QTLENERGELANEVKVLLQGKGDSEHKRKK K A K V K V 2 1 2 0 0 1 4 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 17 2 1927.9963 P35579 P35579 1218 1234 MYH9 Myosin-9 yes yes 3;4 0.00017336 40.693 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 1 1.043 1.197 8.6042 9 Median 1.1714 1.2383 7.6306 3 0 Median 0.99397 1.1326 6.8113 2 0 Median 0.80026 1.0573 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.047 1.2309 3.9541 2 0 Median 1.4289 1.3715 NaN 1 0 Median 143770000 63319000 80456000 113290000 49480000 63812000 7116700 3133200 3983600 8269600 4119800 4149700 0 0 0 13115000 5524800 7590500 1980700 1061200 919530 1677 2244 1750 8642;8643;8644;8645;8646;8647;8648;8649;8650 8928;8929;8930;8931;8932;8933;8934;8935;8936;8937;8938 8931 11 AKRPLMVLGSQALLTPTSADK ASPQQVQRCVEILSRAKRPLMVLGSQALLT VLGSQALLTPTSADKLRAAVETLGVPCFLG R A K D K L 3 1 0 1 0 1 0 1 0 0 4 2 1 0 2 2 2 0 0 1 0 0 21 2 2196.23 M0R026;A1L0T0;M0QZX5 M0R026 176 196 ILVBL Acetolactate synthase-like protein yes no 3 0.0048414 24.548 By MS/MS 1 0.71762 0.77686 NaN 1 Median 0.71762 0.77686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3337300 2006700 1330700 3337300 2006700 1330700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1678 492 1751 8651 8939 8939 1 AKTELLLSAEAAK NESKEKVSQLDIQIKAKTELLLSAEAAKTA IKAKTELLLSAEAAKTAQRADLQNHLDTAQ K A K A K T 4 0 0 0 0 0 2 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 13 1 1343.766 Q15075 Q15075 646 658 EEA1 Early endosome antigen 1 yes yes 2;3 0.0001532 85.522 By MS/MS By matching 2 1 1.0961 1.0612 11.797 3 Median 0.99936 0.98371 15.493 2 0 Median 1.0961 1.0612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12976000 6437800 6538200 10314000 5121800 5192400 2661800 1316000 1345800 0 0 0 0 0 0 0 0 0 0 0 0 1679 2926 1752 8652;8653;8654 8940;8941;8942;8943 8941 4 AKVEFNIR EMTLDEWKAIQNKDRAKVEFNIRKPNEGAD AIQNKDRAKVEFNIRKPNEGADGQWKKGFV R A K I R K 1 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 1 975.55016 Q8NC51 Q8NC51 302 309 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.011132 132.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 3 1 1 1.1557 1.0762 61.453 13 Median 1.198 1.2563 9.0125 3 0 Median 1.3323 1.2284 28.903 4 0 Median 1.0434 1.0585 NaN 1 0 Median 1.1557 1.063 6.9285 3 0 Median 0.83496 0.86635 NaN 1 0 Median 0.16392 0.14221 NaN 1 0 Median 144070000 65650000 78417000 65683000 29311000 36372000 24801000 10749000 14052000 12334000 5869100 6465400 33977000 14683000 19294000 3876000 2152700 1723300 3396100 2885400 510660 1680 3414 1753 8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667 8944;8945;8946;8947;8948;8949;8950;8951;8952;8953;8954 8948 11 AKVNDFLAEIFKK ETEKGASRIDEKSSKAKVNDFLAEIFKKIG SKAKVNDFLAEIFKKIGSKENTKEGLAELY K A K K K I 2 0 1 1 0 0 1 0 0 1 1 3 0 2 0 0 0 0 0 1 0 0 13 2 1521.8555 Q14008;H0YDX5 Q14008 1827 1839 CKAP5 Cytoskeleton-associated protein 5 yes no 3 0.015644 25.322 By matching By MS/MS By matching 1 1 1 1.0732 1.0512 20.661 3 Median 0.80256 0.87869 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1452 1.3268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0732 1.0512 NaN 1 0 Median 3452800 1622000 1830800 695230 435660 259570 0 0 0 2644800 1122500 1522200 0 0 0 0 0 0 112800 63800 49002 1681 2850 1754 8668;8669;8670 8955;8956 8955 2 AKVNMPAKPAPPTK LKPTSKDQVLAMLEKAKVNMPAKPAPPTKA KAKVNMPAKPAPPTKATSKPMGGSAPAKFQ K A K T K A 3 0 1 0 0 0 0 0 0 0 0 3 1 0 4 0 1 0 0 1 0 0 14 2 1448.8174 Q14008 Q14008 1076 1089 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.072993 11.262 By MS/MS By matching 1 1 1.0785 1.1686 7.0128 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.06 1.2281 NaN 1 0 Median 1.0973 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1039900 393010 646840 0 0 0 0 0 0 654460 288490 365960 385400 104520 280880 0 0 0 0 0 0 1682 2850 1755 8671;8672 8957;8958 8957 2 AKWDAWNELK DINTERPGMLDFTGKAKWDAWNELKGTSKE DFTGKAKWDAWNELKGTSKEDAMKAYINKV K A K L K G 2 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 10 1 1259.6299 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 110 119 DBI Acyl-CoA-binding protein yes no 2;3 0.0069216 47.187 By MS/MS By matching By matching 3 2 1 1.2697 1.1561 17.745 6 Median 1.2164 1.1392 11.621 3 0 Median 1.6107 1.3964 24.624 2 0 Median 1.0638 1.0943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14130000 6265500 7864300 8518700 3926400 4592200 4925000 2006300 2918700 686170 332840 353330 0 0 0 0 0 0 0 0 0 1683 193 1756 8673;8674;8675;8676;8677;8678 8959;8960 8959 2 AKWDAWNELKGTSK DINTERPGMLDFTGKAKWDAWNELKGTSKE KAKWDAWNELKGTSKEDAMKAYINKVEELK K A K S K E 2 0 1 1 0 0 1 1 0 0 1 3 0 0 0 1 1 2 0 0 0 0 14 2 1632.826 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 110 123 DBI Acyl-CoA-binding protein yes no 3 0.02228 22.606 By MS/MS 1 0.70277 0.7098 NaN 1 Median 0.70277 0.7098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6657500 3368000 3289500 6657500 3368000 3289500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1684 193 1757 8679 8961;8962 8961 2 AKWYPEVR ICFSLVSPASFENVRAKWYPEVRHHCPNTP ASFENVRAKWYPEVRHHCPNTPIILVGTKL R A K V R H 1 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 8 1 1047.5502 P63000;P60763;J3KSC4;J3QLK0 P63000 95 102 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 no no 2 0.011923 107.66 By MS/MS By MS/MS 1 1 0.71673 0.7497 24.504 2 Median 0.60388 0.63043 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85067 0.89153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29504000 16451000 13052000 14654000 9246500 5407600 0 0 0 14850000 7204900 7644900 0 0 0 0 0 0 0 0 0 1685 2615;2528 1758 8680;8681 8963;8964;8965 8963 3 AKYHGNVMLLR SFYYKLRAAEQYTPKAKYHGNVMLLRAKTG YTPKAKYHGNVMLLRAKTGGAYGEDLGADY K A K L R A 1 1 1 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 1 1 0 0 11 1 1300.7074 P49327;A0A0U1RQF0 P49327 2437 2447 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 4.3315E-06 98.04 By MS/MS 2 1.073 1.0764 NaN 1 Median 1.073 1.0764 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14745000 8372300 6372400 14745000 8372300 6372400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1686 2377 1759 8682;8683 8966;8967 8967 2 AKYPDRVPVIVEK DHSLEHRCVESAKIRAKYPDRVPVIVEKVS IRAKYPDRVPVIVEKVSGSQIVDIDKRKYL R A K E K V 1 1 0 1 0 0 1 0 0 1 0 2 0 0 2 0 0 0 1 3 0 0 13 2 1512.8664 P60520;H3BSM5 P60520 23 35 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2;3 0.0002536 69.672 By MS/MS By MS/MS 2 1 0.70141 0.63573 17.441 2 Median NaN NaN NaN 0 0 Median 0.70141 0.63573 17.441 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32330000 17454000 14876000 0 0 0 32330000 17454000 14876000 0 0 0 0 0 0 0 0 0 0 0 0 1687 2526 1760 8684;8685;8686 8968;8969;8970;8971;8972;8973 8971 6 AKYPDYEVTWANDGY AYGPAQHAISTEKIKAKYPDYEVTWANDGY AKYPDYEVTWANDGY_______________ K A K G Y - 2 0 1 2 0 0 1 1 0 0 0 1 0 0 1 0 1 1 3 1 0 0 15 1 1790.7788 Q9NRX4 Q9NRX4 111 125 PHPT1 14 kDa phosphohistidine phosphatase yes yes 2 0.002368 48.981 By matching By matching By MS/MS 2 2 1 0.98066 0.85355 22.607 5 Median 0.9739 0.90788 40.808 2 0 Median 1.1014 0.93631 13.087 2 0 Median 0.82071 0.78771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18051000 9377900 8673500 6362700 3432700 2929900 3465600 1512200 1953400 8223100 4433000 3790100 0 0 0 0 0 0 0 0 0 1688 4092 1761 8687;8688;8689;8690;8691 8974 8974 1 ALAAAGYDVEK ASKERSGVSLAALKKALAAAGYDVEKNNSR ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K A L E K N 4 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1106.5608 P10412;Q02539;P16402;P16403 P16402 66 76 HIST1H1E;HIST1H1A;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.3;Histone H1.2 no no 1;2 4.0438E-05 135.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 9 7 17 12 1.2154 1.0145 62.265 49 Median 1.2847 1.1877 3.2958 2 1 Median 2.3117 1.976 59.208 5 1 Median 0.96739 0.97707 80.272 9 2 Median 1.939 1.7431 64.183 6 3 Median 0.81573 0.83011 52.51 16 4 Median 1.2591 1.0272 24.634 11 1 Median 10314000000 4937900000 5375800000 68776000 28462000 40314000 184450000 74184000 110270000 947290000 476080000 471210000 456380000 174770000 281610000 4383200000 2327000000 2056200000 4273500000 1857400000 2416100000 1689 2028;1937;2029 1762 8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703;8704;8705;8706;8707;8708;8709;8710;8711;8712;8713;8714;8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726;8727;8728;8729;8730;8731;8732;8733;8734;8735;8736;8737;8738;8739;8740;8741;8742;8743 8975;8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992;8993;8994;8995;8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007;9008;9009;9010;9011;9012;9013;9014;9015;9016;9017;9018;9019;9020;9021;9022;9023;9024;9025;9026;9027;9028;9029;9030;9031;9032;9033;9034;9035;9036;9037;9038;9039 8994 64 ALAAAGYDVEKNNSR ASKERSGVSLAALKKALAAAGYDVEKNNSR ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV K A L S R I 4 1 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 15 1 1577.7798 P10412;Q02539;P16402;P16403 P16402 66 80 HIST1H1E;HIST1H1A;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.3;Histone H1.2 no no 2;3 2.3137E-45 217.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 7 9 16 11 1.1957 1.0527 66.867 51 Median 1.5676 1.5786 7.8497 3 2 Plateau 1.5875 1.4447 72.934 6 6 Median 0.53636 0.55915 117.57 6 5 Median 2.1705 1.9213 71.928 9 6 Median 0.83267 0.91833 6.9786 16 2 Median 1.2411 1.0884 19.344 11 1 Median 3991100000 2159100000 1832000000 43638000 17739000 25900000 26280000 15986000 10294000 139310000 129070000 10237000 265960000 169610000 96346000 3265600000 1719600000 1546100000 250260000 107130000 143130000 1690 2028;1937;2029 1763 8744;8745;8746;8747;8748;8749;8750;8751;8752;8753;8754;8755;8756;8757;8758;8759;8760;8761;8762;8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784;8785;8786;8787;8788;8789;8790;8791;8792;8793;8794;8795 9040;9041;9042;9043;9044;9045;9046;9047;9048;9049;9050;9051;9052;9053;9054;9055;9056;9057;9058;9059;9060;9061;9062;9063;9064;9065;9066;9067;9068;9069;9070;9071;9072;9073;9074;9075;9076;9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094;9095;9096;9097;9098;9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109;9110;9111;9112;9113;9114;9115;9116;9117;9118;9119;9120;9121;9122;9123 9065 84 ALAAAGYDVEKNNSRIK ASKERSGVSLAALKKALAAAGYDVEKNNSR AAAGYDVEKNNSRIKLGLKSLVSKGTLVQT K A L I K L 4 1 2 1 0 0 1 1 0 1 1 2 0 0 0 1 0 0 1 1 0 0 17 2 1818.9588 P10412;Q02539;P16402;P16403 P16402 66 82 HIST1H1E;HIST1H1A;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.3;Histone H1.2 no no 4 0.062509 9.6577 By MS/MS 1 0.78558 0.91566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78558 0.91566 NaN 1 0 Median NaN NaN NaN 0 0 Median 3415800 1645900 1769900 0 0 0 0 0 0 0 0 0 0 0 0 3415800 1645900 1769900 0 0 0 1691 2028;1937;2029 1764 8796 9124 9124 1 ALAAEEIR ATAFGASGGGRPHPRALAAEEIRQMLQGKP GGRPHPRALAAEEIRQMLQGKPLADTMRPD R A L I R Q 3 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 871.47633 Q96S55 Q96S55 212 219 WRNIP1 ATPase WRNIP1 yes yes 2 0.044461 54.157 By MS/MS 1 0.8546 0.84698 NaN 1 Median 0.8546 0.84698 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1604300 775920 828370 1604300 775920 828370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1692 3730 1765 8797 9125 9125 1 ALAAFLKK PGVTVKDVNQQEFVRALAAFLKKSGKLKVP NQQEFVRALAAFLKKSGKLKVPEWVDTVKL R A L K K S 3 0 0 0 0 0 0 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 8 1 860.54837 P39019;M0R2L9;M0QYF7;M0R140 P39019 17 24 RPS19 40S ribosomal protein S19 yes no 2 0.0074676 76.847 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.2986 1.2937 13.709 7 Median 1.3091 1.2937 NaN 1 0 Median 1.3104 1.1476 0.16466 2 0 Median 1.2958 1.2943 NaN 1 0 Median 1.2616 1.0969 26.031 2 0 Median 1.1724 1.3479 NaN 1 0 Median NaN NaN NaN 0 0 Median 314200000 135700000 178500000 162710000 73679000 89033000 50620000 21294000 29326000 73218000 29847000 43372000 22729000 8959500 13770000 4923500 1924300 2999200 0 0 0 1693 2280 1766 8798;8799;8800;8801;8802;8803;8804 9126;9127;9128;9129;9130;9131;9132 9130 7 ALAAGGVGSIVR PSDNSSAMLLQWHEKALAAGGVGSIVRVLT HEKALAAGGVGSIVRVLTARKTV_______ K A L V R V 3 1 0 0 0 0 0 3 0 1 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1069.6244 O15511 O15511 132 143 ARPC5 Actin-related protein 2/3 complex subunit 5 yes yes 2 9.9476E-05 134.25 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1.1344 1.0182 34.462 5 Median 1.1344 1.0606 NaN 1 0 Median 0.73507 0.68109 47.278 2 0 Median 1.126 1.1361 NaN 1 0 Median 1.2981 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 186390000 89141000 97248000 106230000 48961000 57266000 14893000 10758000 4134600 54915000 25032000 29884000 10354000 4389400 5964300 0 0 0 0 0 0 1694 1551 1767 8805;8806;8807;8808;8809 9133;9134;9135;9136 9134 4 ALAAPAAEEKEEAR ______________________________ RALAAPAAEEKEEAREKMLAAKSADGSAPA R A L A R E 6 1 0 0 0 0 4 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 14 1 1454.7365 Q01650 Q01650 10 23 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 2;3 2.5701E-07 113.47 By MS/MS By MS/MS By matching By matching 3 5 1 1 0.86184 0.88135 33.237 10 Median 1.293 1.3232 20.256 3 0 Median 0.75774 0.68035 14.007 5 0 Median 0.77034 0.8724 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1278 1.3145 NaN 1 0 Median NaN NaN NaN 0 0 Median 40939000 21599000 19340000 4172000 1769400 2402600 31956000 17372000 14585000 2459100 1317800 1141200 0 0 0 2351800 1140100 1211700 0 0 0 1695 2688 1768 8810;8811;8812;8813;8814;8815;8816;8817;8818;8819 9137;9138;9139;9140;9141;9142;9143;9144;9145;9146;9147;9148 9143 12 ALAAPAAEEKEEAREK ______________________________ LAAPAAEEKEEAREKMLAAKSADGSAPAGE R A L E K M 6 1 0 0 0 0 5 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 16 2 1711.8741 Q01650 Q01650 10 25 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 3;4 0.00061957 37.555 By MS/MS By matching 6 1 1.297 1.4743 26.542 7 Median 1.6001 1.498 27.434 6 0 Linear 0.97069 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5896400 2610900 3285500 5520300 2461600 3058700 376090 149300 226780 0 0 0 0 0 0 0 0 0 0 0 0 1696 2688 1769 8820;8821;8822;8823;8824;8825;8826 9149;9150;9151;9152 9151 4 ALAAQLPVLPR QFLEQGEATLSVARRALAAQLPVLPRSEVT VARRALAAQLPVLPRSEVTFLAPVTRPDKV R A L P R S 3 1 0 0 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 1 0 0 11 0 1147.7077 Q96GK7;C9JGM0 Q96GK7 83 93 FAHD2A Fumarylacetoacetate hydrolase domain-containing protein 2A yes no 2 0.00018709 109.86 By MS/MS By matching By matching 1 1 1 0.86609 0.72189 14.173 3 Median 0.68994 0.64509 NaN 1 0 Median 0.86609 0.72189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0141 0.85488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15406000 8493800 6912100 10177000 5701700 4475200 5057600 2690300 2367300 0 0 0 171340 101690 69650 0 0 0 0 0 0 1697 3658 1770 8827;8828;8829 9153;9154;9155 9155 3 ALAAQNIVEDMEQR NKVSMAPDGNGGLYRALAAQNIVEDMEQRG RALAAQNIVEDMEQRGIWSIHVYCVDNILV R A L Q R G 3 1 1 1 0 2 2 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 14 0 1586.7723 Q16222 Q16222 229 242 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes yes 2 2.1428E-07 113.47 By MS/MS By matching By matching 1 2 1 1.5405 1.5531 29.818 4 Median 1.5664 1.5088 NaN 1 0 Median 1.4284 1.2344 46.079 2 0 Median 1.515 1.5986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10253000 4880100 5373300 6618700 3331500 3287300 2360400 1056400 1304000 1274300 492270 782040 0 0 0 0 0 0 0 0 0 1698 2981 1771 8830;8831;8832;8833 9156 9156 1 ALAAVPSAGSVQR EAAGRGLQPLKLDYRALAAVPSAGSVQRVP YRALAAVPSAGSVQRVPSGAAGGKMAESPC R A L Q R V 4 1 0 0 0 1 0 1 0 0 1 0 0 0 1 2 0 0 0 2 0 0 13 0 1225.6779 A0A0G2JNZ2;A0A0G2JPP5;Q14160;A0A0G2JMS7;H0YCG0 A0A0G2JNZ2 1270 1282 SCRIB Protein scribble homolog yes no 2 0.0091208 36.693 By matching By MS/MS 1 1 0.98724 0.91475 45.095 2 Median 0.65753 0.665 NaN 1 0 Median 1.4823 1.2583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4693800 1873200 2820600 850600 500600 350010 3843200 1372600 2470600 0 0 0 0 0 0 0 0 0 0 0 0 1699 283 1772 8834;8835 9157 9157 1 ALADDDFLTVTGK SDIAITKDMFEEALRALADDDFLTVTGKTV LRALADDDFLTVTGKTVRLL__________ R A L G K T 2 0 0 3 0 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 13 0 1364.6824 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 796 808 MCM4 DNA replication licensing factor MCM4 yes no 2 7.5519E-07 103.22 By MS/MS By matching By MS/MS 2 4 1 1.1804 1.0357 22.691 7 Median 0.89244 0.8611 10.964 2 1 Median 1.4114 1.2455 15.616 4 0 Median 0.82516 0.89149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81052000 41902000 39150000 49448000 25032000 24416000 4453600 1978500 2475100 27151000 14891000 12259000 0 0 0 0 0 0 0 0 0 1700 441 1773 8836;8837;8838;8839;8840;8841;8842 9158;9159;9160;9161;9162 9158 5 ALADENEFVR KFTPYVGPIIPCILKALADENEFVRDTALR PCILKALADENEFVRDTALRAGQRVISMYA K A L V R D 2 1 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1162.5619 Q92616 Q92616 1785 1794 GCN1L1 Translational activator GCN1 yes yes 2 0.00047649 90.657 By MS/MS By matching 4 1 18.446 20.517 185.82 4 Linear NaN NaN NaN 0 0 Median 1.3184 1.0576 52.777 3 1 Plateau 24.431 28.488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117580000 11862000 105720000 0 0 0 22011000 9216200 12795000 95567000 2645500 92922000 0 0 0 0 0 0 0 0 0 1701 3544 1774 8843;8844;8845;8846;8847 9163;9164;9165;9166 9166 4 ALADEREAVQKK NENSSARLFERSRIKALADEREAVQKKTFT RIKALADEREAVQKKTFTKWVNSHLARVSC K A L K K T 3 1 0 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 12 2 1356.7361 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4;E9PJZ2 Q01082 47 58 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 3 0.045122 18.625 By matching By MS/MS 1 1 0.93296 1.1025 7.874 2 Median 1.1027 1.1657 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78932 1.0428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2883500 1526800 1356600 300530 142800 157720 0 0 0 2583000 1384000 1198900 0 0 0 0 0 0 0 0 0 1702 2681;1512 1775 8848;8849 9167 9167 1 ALADFIRNKLSSIK ETYCGPAAESEKETKALADFIRNKLSSIKA KALADFIRNKLSSIKAYLTIHSYSQMMIYP K A L I K A 2 1 1 1 0 0 0 0 0 2 2 2 0 1 0 2 0 0 0 0 0 0 14 2 1574.9144 P15086 P15086 285 298 CPB1 Carboxypeptidase B yes yes 3 0.00067562 45.115 By matching By MS/MS By matching 2 3 2 0.94576 1.0311 16.756 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85254 0.97232 8.3058 2 0 Median 0.94843 1.0354 13.165 3 0 Median NaN NaN NaN 0 0 Median 0.97606 0.89632 27.125 2 0 Median 94231000 42052000 52178000 0 0 0 0 0 0 42134000 16670000 25464000 48797000 23699000 25098000 0 0 0 3300200 1683800 1616400 1703 2014 1776 8850;8851;8852;8853;8854;8855;8856 9168;9169 9169 2 ALADHSMAQTPR LVGNEAVDQLVKFNRALADHSMAQTPRLID FNRALADHSMAQTPRLIDGIVLTKFDTIDD R A L P R L 3 1 0 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 12 0 1296.6245 P08240 P08240 569 580 SRPR Signal recognition particle receptor subunit alpha yes yes 3 0.00016594 68.44 By MS/MS By MS/MS By MS/MS 1 1 1 1.1296 1.3879 10.711 3 Plateau 1.1296 1.1465 NaN 1 1 Median 1.6028 1.3879 NaN 1 0 Median 1.1039 1.1599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4935500 2070400 2865100 1388300 735810 652510 2213300 663550 1549800 1333900 671080 662780 0 0 0 0 0 0 0 0 0 1704 1900 1777 8857;8858;8859 9170;9171;9172 9172 3 ALADIVIPQEYGITK SLKLENTMELYRLSKALADIVIPQEYGITK ALADIVIPQEYGITKAEKLEIAKGYCTPLV K A L T K A 2 0 0 1 0 1 1 1 0 3 1 1 0 0 1 0 1 0 1 1 0 0 15 0 1629.8978 A0A087WZV0;O43314;H0Y9S9 A0A087WZV0 754 768 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 yes no 2 0.0013248 40.727 By MS/MS By matching 1 1 1.1065 1.0564 19.397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85928 0.92101 NaN 1 0 Median 1.4248 1.2117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1997000 1041100 955900 0 0 0 0 0 0 1574900 852350 722580 422040 188710 233330 0 0 0 0 0 0 1705 99 1778 8860;8861 9173 9173 1 ALADTENLR KLEEQLKETVEKYKRALADTENLRQRSQKL VEKYKRALADTENLRQRSQKLVEEAKLYGI R A L L R Q 2 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1001.5142 Q9HAV7 Q9HAV7 81 89 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 2 0.00061232 94.114 By MS/MS By MS/MS 1 2 1.01 0.96506 2.9289 2 Median 0.99488 0.94528 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0253 0.98525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34958000 20256000 14702000 25555000 14504000 11051000 0 0 0 9403300 5752100 3651300 0 0 0 0 0 0 0 0 0 1706 4013 1779 8862;8863;8864 9174;9175;9176 9174 3 ALADVATVLGR LSPEEDLNFVTDTAKALADVATVLGRALYE DTAKALADVATVLGRALYELAGGTNFSDTV K A L G R A 3 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1084.6241 Q92542;H0Y6T7 Q92542 486 496 NCSTN Nicastrin yes no 2 0.00013666 85.676 By MS/MS By MS/MS 1 3 1.1106 1.0245 18.13 4 Median 1.0883 1.0507 NaN 1 0 Median 1.1334 0.99898 21.946 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13822000 6245800 7576400 7395400 3355200 4040100 6426800 2890600 3536200 0 0 0 0 0 0 0 0 0 0 0 0 1707 3535 1780 8865;8866;8867;8868 9177;9178 9177 2 ALADVEVTYTVQR GTQEFEDVSYESTLKALADVEVTYTVQRNI LKALADVEVTYTVQRNILDFPQHVSPSKDI K A L Q R N 2 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 2 0 1 3 0 0 13 0 1463.762 P52888;K7EKB6 P52888 67 79 THOP1 Thimet oligopeptidase yes no 2 0.035752 43.512 By MS/MS 1 0.72566 0.69789 NaN 1 Median 0.72566 0.69789 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4307600 3233200 1074500 4307600 3233200 1074500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1708 2460 1781 8869 9179 9179 1 ALADYIR GMMMKREYRGQRSVKALADYIRQQKSDPIQ YRGQRSVKALADYIRQQKSDPIQEIRDLAE K A L I R Q 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 820.4443 Q9BS26 Q9BS26 131 137 ERP44 Endoplasmic reticulum resident protein 44 yes yes 2 0.016156 69.432 By MS/MS By matching By matching By MS/MS 4 3 1 1 1.0111 1.002 31.583 9 Median 1.0595 1.054 36.502 4 0 Median 0.99481 0.86759 11.824 3 0 Median 0.71659 0.72186 NaN 1 0 Median 0.94541 0.81973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33560000 16667000 16893000 18872000 9161500 9710900 6969200 3597200 3372100 2890700 1447800 1442900 4827600 2460100 2367500 0 0 0 0 0 0 1709 3809 1782 8870;8871;8872;8873;8874;8875;8876;8877;8878 9180;9181;9182;9183 9182 4 ALAEEVEQVHR PRLKRELEDHIRKLRALAEEVEQVHRGTTI RKLRALAEEVEQVHRGTTIANVVSNSVGTT R A L H R G 2 1 0 0 0 1 3 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1279.6521 J3KQL8;Q9BQE5;E9PM95 J3KQL8 213 223 APOL2 Apolipoprotein L2 yes no 3 0.0003651 59.542 By MS/MS 1 1.0207 0.98344 NaN 1 Median 1.0207 0.98344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2595200 1287000 1308200 2595200 1287000 1308200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1710 1320 1783 8879 9184 9184 1 ALAEGVLLR DKQQLEELARQAVDRALAEGVLLRTSQEPT RQAVDRALAEGVLLRTSQEPTSSEVVSYAP R A L L R T 2 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 9 0 940.57057 A0A2R8Y430;P48637;A0A2R8YF34;A0A2R8Y2X9;A0A2R8Y6Y6;A0A2R8Y4V9;A0A2R8Y790;A0A2R8Y446;A0A0S2Z4J7 A0A2R8Y430 26 34 GSS Glutathione synthetase yes no 2 0.00068909 104.45 By MS/MS By matching By matching 1 2 1 1.2518 1.2188 22.051 4 Median 1.2596 1.1888 NaN 1 0 Median 1.2438 1.0491 34.948 2 0 Median 1.244 1.2496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38289000 16870000 21418000 23849000 11243000 12605000 10887000 4117600 6769500 3553000 1509700 2043300 0 0 0 0 0 0 0 0 0 1711 358 1784 8880;8881;8882;8883 9185;9186 9186 2 ALAEIAKAELDDTPMR INKGKGFGFIKLESRALAEIAKAELDDTPM LAEIAKAELDDTPMRGRQLRVRFATHAAAL R A L M R G 4 1 0 2 0 0 2 0 0 1 2 1 1 0 1 0 1 0 0 0 0 0 16 1 1742.8873 P23246 P23246 343 358 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 4.2598E-05 63.134 By matching By MS/MS 1 2 1.1569 1.2723 30.255 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81775 0.92956 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3169 1.4716 20.583 2 0 Median NaN NaN NaN 0 0 Median 10593000 4824000 5769000 0 0 0 0 0 0 2467000 1140800 1326200 0 0 0 8126000 3683200 4442800 0 0 0 1712 2107 1785 8884;8885;8886 9187;9188 9188 2 ALAENSGVK YAIKKFAEAFEAIPRALAENSGVKANEVIS FEAIPRALAENSGVKANEVISKLYAVHQEG R A L V K A 2 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 887.47125 P50990;H7C2U0 P50990 451 459 CCT8 T-complex protein 1 subunit theta yes no 2 0.0036618 63.565 By matching By MS/MS By matching By matching 1 2 2 1 1.1125 1.069 12.815 6 Median 1.0161 1.0837 NaN 1 0 Median 1.1652 1.0518 0.35502 2 0 Median 1.0407 1.0619 28.01 2 0 Median NaN NaN NaN 0 0 Median 1.0972 1.1284 NaN 1 0 Median NaN NaN NaN 0 0 Median 4343400 2042800 2300500 318020 161430 156590 2946300 1352500 1593800 647600 332490 315110 0 0 0 431510 196440 235080 0 0 0 1713 2423 1786 8887;8888;8889;8890;8891;8892 9189;9190 9190 2 ALAETGIAVPSYYNPAAVNPMK PQIAMAAQMAALQAKALAETGIAVPSYYNP AVPSYYNPAAVNPMKFAEQEKKRKMLWQGK K A L M K F 5 0 2 0 0 0 1 1 0 1 1 1 1 0 3 1 1 0 2 2 0 0 22 0 2276.1511 Q7L4I2 Q7L4I2 306 327 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes yes 2 0.0036217 39.73 By MS/MS 1 0.48061 0.49451 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48061 0.49451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625100 1930800 694310 0 0 0 0 0 0 2625100 1930800 694310 0 0 0 0 0 0 0 0 0 1714 3222 1787 8893 9191 9191 1 ALAEVDVISLEQGKK LLEKVPAELICLDPRALAEVDVISLEQGKK ALAEVDVISLEQGKKEQIERLGYDPQAKAP R A L K K E 2 0 0 1 0 1 2 1 0 1 2 2 0 0 0 1 0 0 0 2 0 0 15 1 1598.8879 O15213 O15213 520 534 WDR46 WD repeat-containing protein 46 yes yes 2;3 4.1753E-09 116.23 By MS/MS By matching 2 2 1.0461 1.0546 21.422 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1406 1.2773 15.614 2 0 Median 1.0142 0.92054 7.7453 2 0 Median 13117000 6062600 7054000 0 0 0 0 0 0 0 0 0 0 0 0 12232000 5659800 6571800 885040 402820 482220 1715 1531 1788 8894;8895;8896;8897 9192;9193 9193 2 ALAEYVVQQEGAK PKLIGDRPNTYIYTKALAEYVVQQEGAKLN TKALAEYVVQQEGAKLNVAIVRPSIVGASW K A L A K L 3 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 13 0 1404.7249 E9PNW8;Q8WVX9 E9PNW8 209 221 FAR1 Fatty acyl-CoA reductase 1 yes no 2 0.00013393 145.89 By MS/MS By MS/MS By matching 1 1 1 1.0422 0.88963 34.914 3 Median 0.60754 0.56816 NaN 1 0 Median 1.0422 0.88963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0429 1.1302 NaN 1 0 Median NaN NaN NaN 0 0 Median 15576000 8120900 7455500 7874000 4573800 3300200 3216800 1577000 1639800 0 0 0 0 0 0 4485700 1970100 2515500 0 0 0 1716 976 1789 8898;8899;8900 9194;9195 9194 2 ALAFNGVMFGDRPLK RFAFVEFADQNSVPRALAFNGVMFGDRPLK ALAFNGVMFGDRPLKINHSNNAIVKPPEMT R A L L K I 2 1 1 1 0 0 0 2 0 0 2 1 1 2 1 0 0 0 0 1 0 0 15 1 1634.8603 Q8WXA9 Q8WXA9 122 136 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 3 0.0014964 48.823 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1717 3516 1790 8901 9196 9196 1 ALAGCDFLTISPK TIVMGASFRNTGEIKALAGCDFLTISPKLL IKALAGCDFLTISPKLLGELLQDNAKLVPV K A L P K L 2 0 0 1 1 0 0 1 0 1 2 1 0 1 1 1 1 0 0 0 0 0 13 0 1391.7119 P37837;F2Z393 P37837 246 258 TALDO1 Transaldolase yes no 2 0.010186 53.683 By MS/MS 2 0.93137 0.88666 11.859 2 Median 0.93137 0.88666 11.859 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4100600 2144700 1955900 4100600 2144700 1955900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1718 2270 1791 8902;8903 9197;9198 9197 2 ALAGVTYAAK PSLRNFIAMGKNYEKALAGVTYAAKGYFDA KNYEKALAGVTYAAKGYFDALVKMGELASE K A L A K G 4 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 963.53893 Q9UQB8;I3L4C2;I3L3C5;I3L0M4;I3L3J7;I3L327 Q9UQB8 41 50 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 2 0.0070645 48.283 By matching By MS/MS By MS/MS By matching 1 1 1 1 3.1456 1.2186 63.471 4 Linear NaN NaN NaN 0 0 Median 1.1791 1.0263 NaN 1 0 Median 1.4063 1.447 NaN 1 0 Median 1.1821 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.6973 3.9121 NaN 1 0 Median 8971300 2569100 6402200 0 0 0 1034600 553010 481600 2578100 1039300 1538800 1327600 565070 762520 0 0 0 4031000 411680 3619300 1719 4361 1792 8904;8905;8906;8907 9199;9200 9200 2 ALAIYEGQLGPDNPNVAR QNQGKYEAVERYYQRALAIYEGQLGPDNPN IYEGQLGPDNPNVARTKNNLASCYLKQGKY R A L A R T 3 1 2 1 0 1 1 2 0 1 2 0 0 0 2 0 0 0 1 1 0 0 18 0 1896.9694 Q9NSK0;H7C4M1 Q9NSK0 363 380 KLC4 Kinesin light chain 4 yes no 2 3.338E-07 86.028 By MS/MS 1 0.59645 0.58047 NaN 1 Median 0.59645 0.58047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4906700 2965800 1940900 4906700 2965800 1940900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1720 4105 1793 8908 9201 9201 1 ALAKPAVFIPVNR MTVPPPPAAAPPLPRALAKPAVFIPVNRSP PRALAKPAVFIPVNRSPEMQEERLKLPILS R A L N R S 3 1 1 0 0 0 0 0 0 1 1 1 0 1 2 0 0 0 0 2 0 0 13 1 1394.8398 Q8IY37;F5H3Y4 Q8IY37 229 241 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.011861 47.603 By MS/MS 1 0.7832 0.88777 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7832 0.88777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12512000 6431200 6081100 0 0 0 0 0 0 12512000 6431200 6081100 0 0 0 0 0 0 0 0 0 1721 3336 1794 8909 9202 9202 1 ALALAPGPPTR PRSAPCGSLAFSGDRALALAPGPPTRTRHD SGDRALALAPGPPTRTRHDEYLEVTKAPSL R A L T R T 3 1 0 0 0 0 0 1 0 0 2 0 0 0 3 0 1 0 0 0 0 0 11 0 1062.6186 E9PGC8;P78559 E9PGC8 2439 2449 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 2 0.062078 60.019 By MS/MS By matching 1 1 0.86708 0.81387 18.823 2 Median 0.91797 0.92973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81902 0.71244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3029000 1651200 1377800 2240800 1219000 1021700 0 0 0 0 0 0 788200 432160 356040 0 0 0 0 0 0 1722 923 1795 8910;8911 9203 9203 0 ALALQLQNQR DSRARERLRQIEEQKALALQLQNQRLQERE IEEQKALALQLQNQRLQEREHSVHDSVELH K A L Q R L 2 1 1 0 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1153.6568 Q9P0U3 Q9P0U3 365 374 SENP1 Sentrin-specific protease 1 yes yes 2 1.3924E-11 143 By MS/MS 2 0.81648 0.83894 10.562 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81648 0.83894 10.562 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13953000 7504700 6448200 0 0 0 0 0 0 13953000 7504700 6448200 0 0 0 0 0 0 0 0 0 1723 4209 1796 8912;8913 9204;9205 9204 2 ALAMAESTEK AQVALVNEVKAALGRALAMAESTEKHARLQ AALGRALAMAESTEKHARLQAVMCIISTIM R A L E K H 3 0 0 0 0 0 2 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 10 0 1049.5063 Q7Z6Z7 Q7Z6Z7 2163 2172 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS 1 1 1.2694 1.1816 8.1293 2 Median 1.122 1.1156 NaN 1 0 Median 1.4361 1.2515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4237400 1689200 2548200 887320 443300 444020 3350100 1245900 2104200 0 0 0 0 0 0 0 0 0 0 0 0 1724 3253 1797 8914;8915 9206;9207;9208;9209 9209 4 ALAMGYKPK LTDGASAMLIMAEEKALAMGYKPKAYLRDF IMAEEKALAMGYKPKAYLRDFMYVSQDPKD K A L P K A 2 0 0 0 0 0 0 1 0 0 1 2 1 0 1 0 0 0 1 0 0 0 9 1 977.53682 P55084;F5GZQ3;B5MD38 P55084 326 334 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.023641 58.981 By matching By MS/MS By MS/MS 1 1 1 1.1914 1.1316 6.1304 3 Median NaN NaN NaN 0 0 Median 1.3066 1.2294 NaN 1 0 Median 1.0384 1.0907 NaN 1 0 Median 1.1914 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8295700 3890800 4404900 0 0 0 2114000 893190 1220800 4389700 2286800 2102900 1792000 710730 1081200 0 0 0 0 0 0 1725 2496 1798 8916;8917;8918 9210;9211 9211 2 ALANMHESLEWLASR LIPPQDILRDVSDLKALANMHESLEWLASR ALANMHESLEWLASRTKSAFSNLSTSQMLS K A L S R T 3 1 1 0 0 0 2 0 1 0 3 0 1 0 0 2 0 1 0 0 0 0 15 0 1726.8461 Q96A65 Q96A65 709 723 EXOC4 Exocyst complex component 4 yes yes 3 0.0011088 36.392 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.98885 0.95896 15.046 4 Median 0.81674 0.81984 NaN 1 0 Median 1.063 0.93494 NaN 1 0 Median 0.91986 0.98359 NaN 1 0 Median 1.3227 1.179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3480200 1847900 1632300 1267700 678430 589240 248540 123500 125040 1886100 1002400 883670 77903 43549 34354 0 0 0 0 0 0 1726 3595 1799 8919;8920;8921;8922 9212;9213 9213 2 ALANSLACQGK KKENLKAAQEEYVKRALANSLACQGKYTPS YVKRALANSLACQGKYTPSGQAGAAASESL R A L G K Y 3 0 1 0 1 1 0 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1131.5706 J3KPS3;P04075;H3BR68 J3KPS3 336 346 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 8.5947E-05 150.4 By matching By MS/MS 2 1 1.1664 0.99355 19.081 3 Median 1.1875 1.147 24.304 2 0 Median 1.1664 0.99355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32318000 14530000 17788000 8230800 3649200 4581600 24088000 10881000 13207000 0 0 0 0 0 0 0 0 0 0 0 0 1727 1310 1800 8923;8924;8925 9214;9215 9215 2 ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK AGVNVEPFWPGLFAKALANVNIGSLICNVG GGPAPSTAAAPAEEKKVEAKKEESEESDDD K A L E K K 14 0 3 0 1 0 2 7 0 2 2 1 0 0 6 2 1 0 0 2 0 0 43 0 3807.9214 P05386 P05386 50 92 RPLP1 60S acidic ribosomal protein P1 yes yes 3 0.054821 3.165 By MS/MS 1 0.36064 0.36431 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36064 0.36431 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 669960 542930 127030 0 0 0 0 0 0 669960 542930 127030 0 0 0 0 0 0 0 0 0 1728 1863 1801 8926 9216 9216 1 ALAPDLMPLDLSAR LSDLHNKEHSGGGKRALAPDLMPLDLSARS RALAPDLMPLDLSARSTRDDPSNKETASSL R A L A R S 3 1 0 2 0 0 0 0 0 0 4 0 1 0 2 1 0 0 0 0 0 0 14 0 1481.7912 Q92618;A0A087WUJ4 Q92618 725 738 ZNF516 Zinc finger protein 516 yes no 2 0.0089669 49.5 By MS/MS 1 0.95697 1.035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95697 1.035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1194800 661350 533490 0 0 0 0 0 0 1194800 661350 533490 0 0 0 0 0 0 0 0 0 1729 3545 1802 8927 9217 9217 1 ALAPEYAK YLLVEFYAPWCGHCKALAPEYAKAAGKLKA PWCGHCKALAPEYAKAAGKLKAEGSEIRLA K A L A K A 3 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 8 0 861.45962 P07237;H7BZ94;I3L0S0;I3NI03;I3L3U6;I3L514 P07237 58 65 P4HB Protein disulfide-isomerase yes no 2 0.028622 40.268 By matching By MS/MS By matching By matching 2 1 1 1 1.1471 1.0765 17.222 5 Median 1.2215 1.1679 11.522 2 0 Median 1.3237 1.1206 NaN 1 0 Median 0.93354 0.94733 NaN 1 0 Median 0.91951 0.80673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33032000 14224000 18809000 13577000 5819900 7757500 17916000 7598600 10317000 1174300 604420 569890 364930 200670 164260 0 0 0 0 0 0 1730 1883 1803 8928;8929;8930;8931;8932 9218 9218 1 ALAPTWEQLALGLEHSETVK DHFIKFFAPWCGHCKALAPTWEQLALGLEH WEQLALGLEHSETVKIGKVDCTQHYELCSG K A L V K I 3 0 0 0 0 1 3 1 1 0 4 1 0 0 1 1 2 1 0 1 0 0 20 0 2192.1477 Q8NBS9 Q8NBS9 222 241 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 3 0.00039938 30.767 By MS/MS By matching By MS/MS 1 1 1 1.043 0.88218 11.543 3 Median 1.0455 0.98511 NaN 1 0 Median 1.043 0.88218 NaN 1 0 Median 0.80332 0.7821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37491000 18396000 19095000 5515200 2656200 2859000 24022000 11540000 12483000 7953400 4200100 3753300 0 0 0 0 0 0 0 0 0 1731 3410 1804 8933;8934;8935 9219;9220;9221 9220 3 ALAQEDQGAGEVER AVREKEVEAIQAQAKALAQEDQGAGEVERT KALAQEDQGAGEVERTSRAVEEKFRALCQP K A L E R T 3 1 0 1 0 2 3 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1471.6903 O15020 O15020 1448 1461 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 4.9846E-08 143.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1.2743 1.0662 20.271 7 Median 0.90619 0.91025 NaN 1 0 Median 1.746 1.4784 8.4568 2 1 Median 0.8554 0.93535 NaN 1 0 Median 1.3419 1.1773 NaN 1 0 Median 0.98638 1.036 NaN 1 0 Median 1.2743 1.0662 NaN 1 0 Median 20094000 9341700 10752000 1282700 651910 630780 3772300 1471900 2300400 9352700 4705400 4647300 1718100 722940 995140 2890700 1295200 1595600 1077500 494430 583080 1732 1512 1805 8936;8937;8938;8939;8940;8941;8942 9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233 9228 12 ALAQEQGQHLIPWMGDHK LVFGYACKLFRDDERALAQEQGQHLIPWMG QEQGQHLIPWMGDHKILIDRYDGRGHLHDL R A L H K I 2 0 0 1 0 3 1 2 2 1 2 1 1 0 1 0 0 1 0 0 0 0 18 0 2058.0105 Q12872;F5H1A5 Q12872 51 68 SFSWAP Splicing factor, suppressor of white-apricot homolog yes no 3 8.8601E-05 40.085 By MS/MS 1 0.85056 0.90855 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85056 0.90855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11776000 6560300 5215700 0 0 0 0 0 0 11776000 6560300 5215700 0 0 0 0 0 0 0 0 0 1733 2765 1806 8943 9234 9234 1 ALAQLEAEKR DERRLLQERLGSLQRALAQLEAEKREVERS GSLQRALAQLEAEKREVERSALRLEKDRVA R A L K R E 3 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1127.6299 Q5TZA2 Q5TZA2 1853 1862 CROCC Rootletin yes yes 2 0.014059 54.982 By MS/MS 1 1.5932 1.4152 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5932 1.4152 NaN 1 1 Median 551830 174560 377260 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 551830 174560 377260 1734 3107 1807 8944 9235 9235 1 ALASGTEASSTDPGAPGGPGGAEGPMAK HGGAGGPSGRAEAGRALASGTEASSTDPGA GAPGGPGGAEGPMAKKHAGERDKKLAAKKK R A L A K K 6 0 0 1 0 0 2 7 0 0 1 1 1 0 4 3 2 0 0 0 0 0 28 0 2440.1176 Q16763 Q16763 170 197 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 3 5.3018E-09 43.099 By MS/MS By MS/MS By matching 1 1 1 0.75423 0.71002 35.886 3 Plateau NaN NaN NaN 0 0 Median 0.51453 0.43653 NaN 1 1 Median 0.75423 0.71002 NaN 1 0 Median 0.42728 0.3525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9052800 5298800 3754000 0 0 0 1960700 1411200 549510 6343800 3426800 2917000 748330 460870 287460 0 0 0 0 0 0 1735 2997 1808 8945;8946;8947 9236;9237;9238 9236 3 ALASIDSK DEDAWASKDTEAMKRALASIDSKLNQAKGW DTEAMKRALASIDSKLNQAKGWLRDPSASP R A L S K L 2 0 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 8 0 803.43888 P18206 P18206 269 276 VCL Vinculin yes yes 2 0.0023085 111.82 By MS/MS 1 1.0681 0.90078 NaN 1 Median NaN NaN NaN 0 0 Median 1.0681 0.90078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19960000 9989800 9969900 0 0 0 19960000 9989800 9969900 0 0 0 0 0 0 0 0 0 0 0 0 1736 2057 1809 8948 9239;9240 9240 2 ALASLATATLESVVQER SGDSGGGMYVINLHKALASLATATLESVVQ ASLATATLESVVQERFGSRCARIFRLVLQK K A L E R F 4 1 0 0 0 1 2 0 0 0 3 0 0 0 0 2 2 0 0 2 0 0 17 0 1757.9523 E9PHH9;Q9BUI4 E9PHH9 341 357 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes no 2 3.2344E-05 65.395 By MS/MS 2 1.0384 0.89492 3.3891 2 Median NaN NaN NaN 0 0 Median 1.0384 0.89492 3.3891 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2598800 1253300 1345500 0 0 0 2598800 1253300 1345500 0 0 0 0 0 0 0 0 0 0 0 0 1737 931 1810 8949;8950 9241;9242 9241 2 ALASLMTYK GGIRYSTDVSVDEVKALASLMTYKCAVVDV SVDEVKALASLMTYKCAVVDVPFGGAKAGV K A L Y K C 2 0 0 0 0 0 0 0 0 0 2 1 1 0 0 1 1 0 1 0 0 0 9 0 996.5314 P00367;P49448 P00367 163 171 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.01301 50.607 By MS/MS 1 1.5913 1.5022 NaN 1 Median 1.5913 1.5022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5055900 1759800 3296100 5055900 1759800 3296100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1738 1814 1811 8951 9243 9243 584 1 ALASQLQDSLK ADLAARGEGESPQARALASQLQDSLKDLKA PQARALASQLQDSLKDLKARMQEAMTQEVS R A L L K D 2 0 0 1 0 2 0 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1172.6401 P18206 P18206 571 581 VCL Vinculin yes yes 2 0.0001641 113.71 By MS/MS By MS/MS By MS/MS 2 3 1 1.0368 0.87079 17.87 6 Median 1.0352 0.97588 37.183 2 0 Median 1.0368 0.87079 7.2709 3 0 Median NaN NaN NaN 0 0 Median 1.0095 0.8676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124320000 58659000 65664000 38805000 17593000 21211000 81916000 39210000 42706000 0 0 0 3602000 1855300 1746700 0 0 0 0 0 0 1739 2057 1812 8952;8953;8954;8955;8956;8957 9244;9245;9246;9247;9248;9249;9250;9251 9245 8 ALASQLQDSLKDLK ADLAARGEGESPQARALASQLQDSLKDLKA RALASQLQDSLKDLKARMQEAMTQEVSDVF R A L L K A 2 0 0 2 0 2 0 0 0 0 4 2 0 0 0 2 0 0 0 0 0 0 14 1 1528.8461 P18206 P18206 571 584 VCL Vinculin yes yes 2;3 4.3164E-07 166.14 By MS/MS By matching 3 1 1.2673 1.3196 34.112 4 Median 1.0421 1.0917 24.465 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8762 2.0982 NaN 1 0 Median NaN NaN NaN 0 0 Median 17686000 8628300 9057500 16994000 8375400 8618700 0 0 0 0 0 0 0 0 0 691670 252900 438770 0 0 0 1740 2057 1813 8958;8959;8960;8961 9252;9253;9254 9254 3 ALATHPGISFYEEPR FPLPLEPCTQEFLWRALATHPGISFYEEPR ALATHPGISFYEEPRERPDLQLQDRYEEID R A L P R E 2 1 0 0 0 0 2 1 1 1 1 0 0 1 2 1 1 0 1 0 0 0 15 0 1686.8366 Q12789 Q12789 50 64 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 6.6413E-05 64.675 By matching By MS/MS By matching 1 2 1 0.65952 0.63527 53.796 4 Median NaN NaN NaN 0 0 Median 0.69428 0.59092 NaN 1 0 Median 0.57232 0.62674 12.148 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0787 1.7833 NaN 1 0 Median 55691000 32326000 23366000 0 0 0 2775100 2005200 769920 51537000 29769000 21768000 0 0 0 0 0 0 1379200 551680 827520 1741 2758 1814 8962;8963;8964;8965 9255;9256 9255 2 ALATNPALR GCASAVTEHCITLLRALATNPALRHILVSQ CITLLRALATNPALRHILVSQGLIRELFDY R A L L R H 3 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 925.53451 Q5T4S7 Q5T4S7 3889 3897 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.0017797 77.741 By MS/MS By matching By matching 1 1 1 1.1548 1.087 21.952 3 Median NaN NaN NaN 0 0 Median 1.03 0.83692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1548 1.2946 NaN 1 0 Median 1.3587 1.087 NaN 1 0 Median 11151000 5609400 5541400 0 0 0 10290000 5247600 5042000 0 0 0 0 0 0 471120 221110 250020 390100 140710 249390 1742 3089 1815 8966;8967;8968 9257;9258 9258 2 ALAVGGLGSIIR PTENSSAVLLQWHEKALAVGGLGSIIRVLT HEKALAVGGLGSIIRVLTARKTV_______ K A L I R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1125.687 Q9BPX5 Q9BPX5 134 145 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 2 0.00077584 90.108 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.22 1.0098 18.677 5 Median 0.95109 0.91571 12.105 2 2 Median 1.4973 1.2628 NaN 1 0 Median 1.308 1.3247 NaN 1 0 Median 1.22 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60797000 30314000 30482000 46530000 24357000 22172000 259840 106060 153780 12056000 4997400 7058800 1951000 853520 1097500 0 0 0 0 0 0 1743 3779 1816 8969;8970;8971;8972;8973 9259;9260;9261;9262;9263 9259 5 ALAVHLLDLGLR PRLLRCLSDPAEGCRALAVHLLDLGLRRAA GCRALAVHLLDLGLRRAARPRDALPRLLPA R A L L R R 2 1 0 1 0 0 0 1 1 0 5 0 0 0 0 0 0 0 0 1 0 0 12 0 1289.782 Q86Y56 Q86Y56 94 105 DNAAF5 Dynein assembly factor 5, axonemal yes yes 2 0.0006573 62.463 By MS/MS By matching 1 1 1.3795 1.1549 3.1945 2 Median NaN NaN NaN 0 0 Median 1.3057 1.1291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4575 1.1812 NaN 1 0 Median 20479000 8534700 11944000 0 0 0 19896000 8293900 11602000 0 0 0 0 0 0 0 0 0 582820 240740 342070 1744 3305 1817 8974;8975 9264;9265 9265 2 ALAVMVDHLESEK LQDEMFHSDFQHHNKALAVMVDHLESEKEG NKALAVMVDHLESEKEGVIGCLDLILKWLT K A L E K E 2 0 0 1 0 0 2 0 1 0 2 1 1 0 0 1 0 0 0 2 0 0 13 0 1440.7283 Q14008 Q14008 1223 1235 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 2.5251E-06 107.83 By matching By MS/MS By MS/MS By matching By matching 2 7 5 1 2 1.1145 1.1036 28.785 16 Median 1.0886 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.13 1.2546 16.626 7 3 Median 1.1159 1.008 15.274 5 0 Median 1.1013 1.1619 NaN 1 0 Median 0.66633 0.58242 29.945 2 0 Median 68938000 32367000 36571000 6340800 3374300 2966600 0 0 0 46085000 21354000 24731000 14426000 6628500 7797200 1567000 702300 864710 519840 308320 211530 1745 2850 1818;1819 8976;8977;8978;8979;8980;8981;8982;8983;8984;8985;8986;8987;8988;8989;8990;8991;8992 9266;9267;9268;9269;9270;9271;9272;9273;9274;9275;9276;9277 9268 1529 12 ALAVSDLNR EFEVELERGKTLHIKALAVSDLNRAGQRQV KTLHIKALAVSDLNRAGQRQVFFELNGQLR K A L N R A 2 1 1 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 957.52434 P11498 P11498 1062 1070 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.0020081 75.213 By MS/MS By MS/MS By matching 1 1 1 1.0051 1.0651 38.813 3 Median 0.91085 0.88078 NaN 1 0 Median 2.2299 1.8587 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0051 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 21430000 7514500 13915000 4050500 2012900 2037600 14744000 4223100 10521000 0 0 0 0 0 0 2635200 1278500 1356700 0 0 0 1746 1967 1820 8993;8994;8995 9278;9279;9280 9278 3 ALAVVYGPHEIR AQADGSAYIEQGNTKALAVVYGPHEIRGSR NTKALAVVYGPHEIRGSRARALPDRALVNC K A L I R G 2 1 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 1 2 0 0 12 0 1323.7299 Q9NPD3;E9PPI9 Q9NPD3 48 59 EXOSC4 Exosome complex component RRP41 yes no 2;3 2.2721E-09 171.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 2 0.97752 0.90858 61.952 12 Median 0.9372 0.88988 10.147 2 0 Median 1.6887 1.4277 NaN 1 0 Median 0.93798 0.90072 1.7173 2 0 Median 1.1171 0.92772 3.0905 2 0 Median 0.90244 0.89911 123.03 3 1 Median 0.97521 0.79151 19.651 2 0 Median 144290000 71362000 72927000 35522000 18491000 17031000 4071300 1587600 2483700 67320000 33801000 33519000 11639000 5086900 6552500 21838000 10410000 11429000 3899200 1986300 1912900 1747 4046 1821 8996;8997;8998;8999;9000;9001;9002;9003;9004;9005;9006;9007 9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299 9288 19 ALAYDKLEK LLKDAEALSQRLEEKALAYDKLEKTKNRLQ QRLEEKALAYDKLEKTKNRLQQELDDLTVD K A L E K T 2 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 1 1049.5757 P35580 P35580 1412 1420 MYH10 Myosin-10 yes yes 2 0.013164 69.628 By MS/MS By MS/MS By MS/MS 1 1 1 1.4394 1.3301 43.413 3 Plateau 1.0522 1.026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61872 0.66194 NaN 1 0 Median 1.7675 1.5772 NaN 1 0 Median 19432000 8849300 10583000 7503700 3437800 4065900 0 0 0 0 0 0 0 0 0 3853800 1813600 2040200 8074800 3597900 4476900 1748 2245 1822 9008;9009;9010 9300;9301;9302;9303 9303 4 ALAYFEQLK LLGLNPNADSDFRQRALAYFEQLKISPDAW SDFRQRALAYFEQLKISPDAWQVCAEALAQ R A L L K I 2 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 9 0 1081.5808 O43592;F8WDU6;F5GYW6 O43592 21 29 XPOT Exportin-T yes no 2 0.0044715 60.59 By MS/MS By matching 1 1 1.0875 1.0073 1.983 2 Median 1.0235 0.99326 NaN 1 0 Median 1.1556 1.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9964700 4719100 5245600 7815600 3773500 4042100 2149100 945580 1203500 0 0 0 0 0 0 0 0 0 0 0 0 1749 1576 1823 9011;9012 9304 9304 1 ALCAEADRLQQSHPLSATQIQVK EGLERDLAALEDKVKALCAEADRLQQSHPL LQQSHPLSATQIQVKREELITNWEQIRTLA K A L V K R 4 1 0 1 1 4 1 0 1 1 3 1 0 0 1 2 1 0 0 1 0 0 23 1 2563.3177 A0A0D9SF54;Q13813 Q13813 313 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.0068097 26.477 By MS/MS 1 0.90947 0.84748 NaN 1 Median NaN NaN NaN 0 0 Median 0.90947 0.84748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5014800 2817100 2197700 0 0 0 5014800 2817100 2197700 0 0 0 0 0 0 0 0 0 0 0 0 1750 264;2838 1824 9013 9305 9305 1 ALDAAFYK LRGKLKWRPDEEILKALDAAFYKTFKTVEP PDEEILKALDAAFYKTFKTVEPTGKRFLLA K A L Y K T 3 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 897.45962 P10155;G5E9R9 P10155 352 359 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 2 0.013171 53.554 By MS/MS 1 0.89642 0.86227 NaN 1 Median 0.89642 0.86227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2546000 1392600 1153400 2546000 1392600 1153400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1751 1934 1825 9014 9306 9306 1 ALDDFVLGSAR ______________________________ PPLRALDDFVLGSARLAAPDPCDPQRWCHR R A L A R L 2 1 0 2 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1162.5982 A6NP52;O60831 A6NP52 11 21 PRAF2 PRA1 family protein 2 yes no 2 0.00014645 88.496 By MS/MS By MS/MS By MS/MS 2 2 1 1.1051 1.0837 28.335 5 Median 1.0922 1.0535 4.0008 2 0 Median 1.6919 1.4177 5.4104 2 0 Median 0.70623 0.71618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70469000 33242000 37227000 55441000 26217000 29224000 7831600 3241800 4589800 7196100 3782400 3413600 0 0 0 0 0 0 0 0 0 1752 532 1826 9015;9016;9017;9018;9019 9307;9308;9309;9310;9311;9312;9313;9314;9315 9310 9 ALDDFYK VASRLSDTKAAGEVKALDDFYKMLQHEPDR TKAAGEVKALDDFYKMLQHEPDRAFYGLKQ K A L Y K M 1 0 0 2 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 870.41233 Q9BRX2 Q9BRX2 277 283 PELO Protein pelota homolog yes yes 2 0.051961 39.218 By matching By matching By MS/MS By matching 1 1 1 1 1.0775 1.1702 15.148 4 Linear 1.0711 1.0338 NaN 1 0 Median 1.0174 0.86896 NaN 1 0 Median 1.1179 1.2205 NaN 1 0 Median 1.084 0.91285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4744500 2353700 2390800 1504600 866820 637800 142050 67141 74907 2726600 1237900 1488700 371180 181860 189320 0 0 0 0 0 0 1753 3805 1827 9020;9021;9022;9023 9316 9316 1 ALDDMISTLK EQQMHPTVVISAYRKALDDMISTLKKISIP SAYRKALDDMISTLKKISIPVDISDSDMML K A L L K K 1 0 0 2 0 0 0 0 0 1 2 1 1 0 0 1 1 0 0 0 0 0 10 0 1105.5689 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;E9PQ35;Q5SZX9 P49368 129 138 CCT3 T-complex protein 1 subunit gamma yes no 2 0.0014621 65.305 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1778 0.99765 22.486 5 Median 1.2493 1.1679 NaN 1 0 Median 0.95855 0.81964 25.448 2 0 Median 1.231 1.2055 NaN 1 1 Median 1.1612 0.99765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60287000 27655000 32632000 18755000 8698300 10056000 31852000 14466000 17386000 9152300 4270900 4881400 528450 219400 309040 0 0 0 0 0 0 1754 2379 1828 9024;9025;9026;9027;9028 9317;9318;9319;9320;9321 9317 5 ALDDMISTLKK EQQMHPTVVISAYRKALDDMISTLKKISIP AYRKALDDMISTLKKISIPVDISDSDMMLN K A L K K I 1 0 0 2 0 0 0 0 0 1 2 2 1 0 0 1 1 0 0 0 0 0 11 1 1233.6639 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;E9PQ35 P49368 129 139 CCT3 T-complex protein 1 subunit gamma yes no 2;3 0.00022944 81.338 By MS/MS By matching By MS/MS By matching 3 3 1 2 1.3029 1.2282 44.087 9 Median 1.3029 1.2186 14.788 3 0 Median 1.0542 0.99678 66.889 3 0 Median 1.2229 1.2809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6534 1.4065 17.053 2 0 Median 87329000 39679000 47651000 72754000 32711000 40043000 8872900 4578500 4294500 4620000 2036100 2583900 0 0 0 0 0 0 1082800 353270 729520 1755 2379 1829 9029;9030;9031;9032;9033;9034;9035;9036;9037 9322;9323;9324;9325;9326;9327 9323 6 ALDEGDIALLK QRKTKEDEKDDKPIRALDEGDIALLKTYGQ KPIRALDEGDIALLKTYGQSTYSRQIKQVE R A L L K T 2 0 0 2 0 0 1 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1156.634 P35998;C9JLS9 P35998 24 34 PSMC2 26S protease regulatory subunit 7 yes no 2 0.00013768 117.89 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 2 1 1 1 1.0953 1.0082 15.097 8 Median 1.0452 0.99213 0.28477 2 0 Median 1.1172 0.94564 NaN 1 0 Median 1.1259 1.0907 9.1356 2 0 Median 1.1819 1.0546 NaN 1 0 Median 1.4628 1.4041 NaN 1 0 Median 0.99043 0.8455 NaN 1 0 Median 55931000 25560000 30371000 29042000 13592000 15451000 18321000 8215400 10106000 5996900 2662800 3334100 567800 257660 310140 1672100 648550 1023500 330290 183450 146840 1756 2253 1830 9038;9039;9040;9041;9042;9043;9044;9045 9328;9329;9330 9328 3 ALDELMDGDIIVFQKDDPENDNSELPTAK NLTERIQDYDVSLDKALDELMDGDIIVFQK KDDPENDNSELPTAKEYFRDLYHRVDVIFC K A L A K E 2 0 2 6 0 1 3 1 0 2 3 2 1 1 2 1 1 0 0 1 0 0 29 1 3231.5129 Q93009;H3BND8 Q93009 756 784 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.047063 10.756 By MS/MS 1 0.61329 0.70201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61329 0.70201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3821100 2195300 1625800 0 0 0 0 0 0 3821100 2195300 1625800 0 0 0 0 0 0 0 0 0 1757 3574 1831 9046 9331 9331 1 ALDEMEK AQPGTFEFEYASRWKALDEMEKQQREQVDR FEYASRWKALDEMEKQQREQVDRNIREAKE K A L E K Q 1 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 7 0 834.37932 Q8WXF1 Q8WXF1 281 287 PSPC1 Paraspeckle component 1 yes yes 2 0.010865 81.297 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1046 1.0405 21.966 6 Median NaN NaN NaN 0 0 Median 1.4155 1.2468 NaN 1 0 Median 0.84819 0.85109 2.8335 2 0 Median 1.4578 1.2603 0.85781 2 0 Median 0.86204 0.82423 NaN 1 0 Median NaN NaN NaN 0 0 Median 24072000 12605000 11467000 0 0 0 774060 246980 527080 17785000 9566700 8218500 2949400 1308800 1640600 2563500 1482800 1080700 0 0 0 1758 3520 1832 9047;9048;9049;9050;9051;9052 9332;9333;9334;9335;9336;9337;9338 9332 7 ALDEYYDK FPSVNWLISYSKYMRALDEYYDKHFTEFVP SYSKYMRALDEYYDKHFTEFVPLRTKAKEI R A L D K H 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 8 0 1015.4498 P38606 P38606 460 467 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.011309 57.177 By MS/MS 1 1.1032 0.9356 NaN 1 Median NaN NaN NaN 0 0 Median 1.1032 0.9356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5162800 2165100 2997700 0 0 0 5162800 2165100 2997700 0 0 0 0 0 0 0 0 0 0 0 0 1759 2276 1833 9053 9339;9340 9339 2 ALDEYYDKHFTEFVPLR FPSVNWLISYSKYMRALDEYYDKHFTEFVP DEYYDKHFTEFVPLRTKAKEILQEEEDLAE R A L L R T 1 1 0 2 0 0 2 0 1 0 2 1 0 2 1 0 1 0 2 1 0 0 17 1 2142.0422 P38606 P38606 460 476 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 1.9101E-07 87.02 By MS/MS By matching 1 1 0.98709 0.94917 1.4128 2 Median 0.93658 0.93973 NaN 1 0 Median 1.0403 0.9587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10873000 5375000 5498400 9649900 4949700 4700200 1223400 425250 798130 0 0 0 0 0 0 0 0 0 0 0 0 1760 2276 1834 9054;9055 9341;9342 9342 2 ALDFAVGEYNK GGPMDASVEEEGVRRALDFAVGEYNKASND GVRRALDFAVGEYNKASNDMYHSRALQVVR R A L N K A 2 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 11 0 1225.5979 P01034 P01034 52 62 CST3 Cystatin-C yes yes 2 0.00019545 75.378 By MS/MS By MS/MS By MS/MS 1 1 1 1.2989 1.0717 19.817 3 Median NaN NaN NaN 0 0 Median 1.2989 1.0717 NaN 1 0 Median 0.9287 0.90287 NaN 1 0 Median 1.6297 1.3405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10586000 5039400 5546600 0 0 0 5885200 2631500 3253800 4141600 2144700 1996900 559120 263210 295900 0 0 0 0 0 0 1761 1829 1835 9056;9057;9058 9343;9344;9345;9346;9347 9346 5 ALDFIASK ERGKMRVHKINNVNKALDFIASKGVKLVSI KINNVNKALDFIASKGVKLVSIGAEEIVDG K A L S K G 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 863.47527 O43707;P12814;H9KV75;G3V2W4;G3V2N5;Q08043;G3V2X9;A0A087WSZ2;G3V5M4;G3V2E8 O43707 115 122 ACTN4;ACTN1;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-3 no no 2 0.0023085 111.82 By MS/MS By MS/MS By matching 1 1 2 1.2195 1.1742 10.555 3 Median 1.2195 1.1742 NaN 1 0 Median 1.1838 1.0343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.499 1.2754 NaN 1 0 Median 33661000 15828000 17833000 24518000 11646000 12872000 8073800 3672100 4401800 0 0 0 0 0 0 0 0 0 1069300 510410 558930 1762 1585;1983 1836 9059;9060;9061;9062 9348;9349;9350;9351 9348 4 ALDGAFTEENR KEVANSTANLVKTIKALDGAFTEENRAQCR KTIKALDGAFTEENRAQCRAATAPLLEAVD K A L N R A 2 1 1 1 0 0 2 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1221.5626 Q9Y490 Q9Y490 1545 1555 TLN1 Talin-1 yes yes 2 1.043E-26 169.09 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.0625 0.95769 98.385 6 Median 0.12782 0.13512 NaN 1 0 Median 1.173 0.97047 18.834 2 2 Median 0.88798 0.9686 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6047 2.7316 NaN 1 1 Median 1.1348 0.9469 NaN 1 0 Median 46783000 23545000 23238000 7007800 5865600 1142200 22606000 9763200 12843000 11615000 6217400 5397400 0 0 0 4155400 1042900 3112500 1399200 656060 743150 1763 4441 1837 9063;9064;9065;9066;9067;9068 9352;9353;9354;9355;9356;9357 9355 6 ALDGINSGITHAGR GINRGLSNAEREVGKALDGINSGITHAGRE KALDGINSGITHAGREVEKVFNGLSNMGSH K A L G R E 2 1 1 1 0 0 0 3 1 2 1 0 0 0 0 1 1 0 0 0 0 0 14 0 1380.711 Q6UWP8;K7ESC4 Q6UWP8 50 63 SBSN Suprabasin yes no 3 0.00016621 68.034 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1041700 1041700 0 0 0 0 0 0 0 0 0 0 1041700 1041700 0 0 0 0 0 0 0 1764 3188 1838 9069 9358 9358 1 ALDIAENEMPGLMR PYKVADIGLAAWGRKALDIAENEMPGLMRM KALDIAENEMPGLMRMRERYSASKPLKGAR K A L M R M 2 1 1 1 0 0 2 1 0 1 2 0 2 0 1 0 0 0 0 0 0 0 14 0 1558.7483 P23526 P23526 21 34 AHCY Adenosylhomocysteinase yes yes 2 4.7693E-07 117.52 By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 1.0589 1.0017 19.85 10 Median 1.0589 1.0277 23.753 4 2 Median 1.1698 1.0085 23.292 4 0 Median 0.94293 0.93012 NaN 1 0 Median 0.93932 0.81903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133800000 61102000 72695000 45024000 22272000 22752000 76251000 32997000 43254000 11548000 5242300 6305900 973480 590170 383320 0 0 0 0 0 0 1765 2116 1839 9070;9071;9072;9073;9074;9075;9076;9077;9078;9079 9359;9360;9361;9362;9363;9364;9365;9366;9367;9368 9367 10 ALDIPLVK WAPRPFNLRSGRTRRALDIPLVKNWYREHC RSGRTRRALDIPLVKNWYREHCPAGQPVKV R A L V K N 1 0 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 8 0 867.54295 Q6P2Q9;I3L0J9 Q6P2Q9 421 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0094539 60.788 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 2 2 2 4 1.0123 0.95064 15.115 15 Median 0.99609 0.96973 5.6343 2 0 Median 1.0123 0.889 4.8187 3 0 Median 0.73912 0.86696 6.0481 2 0 Median 1.1812 1.0803 1.6487 2 0 Median 1.1035 1.1433 18.887 2 0 Median 1.0103 0.86934 17.534 4 0 Median 26065000 13279000 12786000 3844100 1798300 2045800 2300300 1066000 1234300 9388400 4975400 4413000 654250 294880 359370 8984700 4722900 4261800 893260 421120 472140 1766 3157 1840 9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090;9091;9092;9093;9094 9369;9370;9371;9372;9373 9371 5 ALDKLDGTEINGR NEGVIEFRSYSDMKRALDKLDGTEINGRNI KRALDKLDGTEINGRNIRLIEDKPRTSHRR R A L G R N 1 1 1 2 0 0 1 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1400.726 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 162 174 SRSF6 Serine/arginine-rich splicing factor 6 yes no 2;3 6.238E-05 90.926 By MS/MS By MS/MS By MS/MS 1 1 2 1.251 1.3415 80.575 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3364 2.3715 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.66986 0.75883 NaN 1 1 Median NaN NaN NaN 0 0 Median 18797000 5993800 12803000 0 0 0 0 0 0 15919000 4138000 11781000 0 0 0 2878300 1855800 1022500 0 0 0 1767 485 1841 9095;9096;9097;9098 9374;9375;9376;9377 9374 4 ALDLADMITR IPNRIMFSEMKRVTKALDLADMITRVIQEG KRVTKALDLADMITRVIQEGLEGLVLKDVK K A L T R V 2 1 0 2 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1117.5801 P49916 P49916 639 648 LIG3 DNA ligase 3 yes yes 2 0.0026503 64.04 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 5 1 1.0118 1.0778 32.279 11 Median 0.37361 0.39716 NaN 1 0 Median 1.0106 0.89329 NaN 1 0 Median 0.97012 1.0291 4.7511 3 0 Plateau 1.3362 1.1619 6.6266 5 0 Median 1.0118 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median 24275000 12141000 12135000 442540 346370 96173 806230 446640 359590 19324000 9738200 9586200 2714900 1138300 1576700 987240 471200 516040 0 0 0 1768 2406 1842;1843 9099;9100;9101;9102;9103;9104;9105;9106;9107;9108;9109 9378;9379;9380;9381;9382;9383;9384 9379 1119 7 ALDLDSSCK EAMKDYTKAMDVYQKALDLDSSCKEAADGY MDVYQKALDLDSSCKEAADGYQRCMMAQYN K A L C K E 1 0 0 2 1 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 9 0 1007.4594 P31948;H0YGI8 P31948 454 462 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0011692 84.498 By MS/MS 1 1.1459 0.9586 NaN 1 Median NaN NaN NaN 0 0 Median 1.1459 0.9586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14395000 8140200 6254900 0 0 0 14395000 8140200 6254900 0 0 0 0 0 0 0 0 0 0 0 0 1769 2212 1844 9110 9385;9386 9385 2 ALDLFSDNAPPPELLEIINEDIAKR VDYDGGRTRSDIVSRALDLFSDNAPPPELL PPELLEIINEDIAKRTCEEHQLCVVAVLPH R A L K R T 3 1 2 3 0 0 3 0 0 3 4 1 0 1 3 1 0 0 0 0 0 0 25 1 2792.4596 Q15084 Q15084 265 289 PDIA6 Protein disulfide-isomerase A6 yes yes 3 0.001193 33.187 By MS/MS By MS/MS 1 1 0.76463 0.73506 10.978 2 Median NaN NaN NaN 0 0 Median 0.86933 0.79439 NaN 1 0 Median 0.67255 0.68016 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4806300 2878900 1927400 0 0 0 2053400 1073100 980260 2752900 1805800 947140 0 0 0 0 0 0 0 0 0 1770 2927 1845 9111;9112 9387;9388 9387 2 ALDLLMGSNTIVQSMAAK FSNSLPPAVVGCASKALDLLMGSNTIVQSM LLMGSNTIVQSMAAKTQRFRSKMEAAGFTI K A L A K T 3 0 1 1 0 1 0 1 0 1 3 1 2 0 0 2 1 0 0 1 0 0 18 0 1861.9642 O75600 O75600 309 326 GCAT 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial yes yes 2 1.3883E-05 60.49 By MS/MS 1 1.3419 1.1833 NaN 1 Median NaN NaN NaN 0 0 Median 1.3419 1.1833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 627650 267000 360650 0 0 0 627650 267000 360650 0 0 0 0 0 0 0 0 0 0 0 0 1771 1685 1846 9113 9389 9389 1 ALDLLNNK IRGLVGNPLPSVRRKALDLLNNKLQQNISW LPSVRRKALDLLNNKLQQNISWKKTIVTRF K A L N K L 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 899.50763 Q9H583;Q5T3Q7 Q9H583 1619 1626 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.007454 66.993 By matching By matching By matching By MS/MS 2 2 1 2 0.85541 0.86081 53.71 7 Median 0.42172 0.43736 82.322 2 0 Median 1.1167 0.94492 8.5107 2 0 Median 1.316 1.3438 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78154 0.80524 9.4371 2 0 Median NaN NaN NaN 0 0 Median 26015000 15172000 10843000 8111600 6062700 2048900 5320900 2422000 2898900 6541500 3004900 3536600 0 0 0 6041200 3682500 2358700 0 0 0 1772 3086 1847 9114;9115;9116;9117;9118;9119;9120 9390 9390 1 ALDLLYGMVSK ILQCLDDKDESIRLRALDLLYGMVSKKNLM IRLRALDLLYGMVSKKNLMEIVKKLMTHVD R A L S K K 1 0 0 1 0 0 0 1 0 0 3 1 1 0 0 1 0 0 1 1 0 0 11 0 1208.6475 O14617;A0A2R8Y611;A0A2R8Y4J3 O14617 360 370 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.031209 31.074 By MS/MS By matching By matching 1 2 1 1.4555 1.3057 45.869 4 Median 2.3273 2.3051 NaN 1 0 Median 1.4555 1.2648 47.364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90323 0.96425 NaN 1 0 Median NaN NaN NaN 0 0 Median 7682500 3022700 4659800 2580600 792440 1788200 4711600 2032300 2679300 0 0 0 0 0 0 390300 197960 192340 0 0 0 1773 1485 1848 9121;9122;9123;9124 9391 9391 1 ALDLVAAK ISDDLMQKISTQNRRALDLVAAKCYYYHAR ISTQNRRALDLVAAKCYYYHARVYEFLDKL R A L A K C 3 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 799.48035 O43242;H0YGV8 O43242 202 209 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 2 0.0040847 83.614 By MS/MS By MS/MS By matching 1 1 1 1.2203 1.0889 16.672 3 Plateau 1.0577 1.0156 NaN 1 0 Median 1.2956 1.0892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90359 0.79308 NaN 1 0 Median 12342000 5434500 6907200 4057400 1800800 2256500 7907100 3409300 4497800 0 0 0 0 0 0 0 0 0 377130 224320 152810 1774 1560 1849 9125;9126;9127 9392;9393;9394 9393 3 ALDMLDAEK YAPEMLAKMAEPFTKALDMLDAEKSAILGL AEPFTKALDMLDAEKSAILGLPQPLLELND K A L E K S 2 0 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1004.4848 Q9HAV4 Q9HAV4 802 810 XPO5 Exportin-5 yes yes 2 0.01817 41.029 By MS/MS 1 1.2551 1.0641 NaN 1 Median NaN NaN NaN 0 0 Median 1.2551 1.0641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8107700 3395800 4711800 0 0 0 8107700 3395800 4711800 0 0 0 0 0 0 0 0 0 0 0 0 1775 4012 1850 9128 9395 9395 1 ALDMSYDHKPEDEVELAR ANAGDSRCVVSEAGKALDMSYDHKPEDEVE MSYDHKPEDEVELARIKNAGGKVTMDGRVN K A L A R I 2 1 0 3 0 0 3 0 1 0 2 1 1 0 1 1 0 0 1 1 0 0 18 1 2116.9735 O15355 O15355 359 376 PPM1G Protein phosphatase 1G yes yes 3;4 4.4078E-08 87.287 By MS/MS By MS/MS 2 3 0.74739 0.74804 26.5 5 Median 0.80165 0.80267 9.9683 2 0 Median 0.74739 0.68565 36.607 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72229000 37124000 35105000 62036000 31019000 31017000 10193000 6104900 4088500 0 0 0 0 0 0 0 0 0 0 0 0 1776 1538 1851 9129;9130;9131;9132;9133 9396;9397;9398;9399;9400 9396 5 ALDPAAAAYLFQR SHLPTHLDPAMPFHRALDPAAAAYLFQRQL HRALDPAAAAYLFQRQLSPTPGYPSQYQLY R A L Q R Q 5 1 0 1 0 1 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 13 0 1405.7354 O75376;E7EVK1 O75376 1577 1589 NCOR1 Nuclear receptor corepressor 1 yes no 2 0.00068899 67.563 By MS/MS 1 0.7131 0.79761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7131 0.79761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1738700 959730 779010 0 0 0 0 0 0 1738700 959730 779010 0 0 0 0 0 0 0 0 0 1777 1665 1852 9134 9401;9402 9402 2 ALDPADQHLR ______________________________ ______________________________ M A L L R H 2 1 0 2 0 1 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1134.5782 Q7Z7K0 Q7Z7K0 2 11 CMC1 COX assembly mitochondrial protein homolog yes yes 2 0.00040502 105.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.3416 1.1197 18.607 5 Median 0.83758 0.81305 NaN 1 1 Median 1.3416 1.143 NaN 1 0 Median 0.79193 0.80167 NaN 1 0 Median 1.4498 1.1379 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3694 1.1197 NaN 1 0 Median 63218000 31009000 32208000 17110000 9041600 8068000 21562000 10014000 11548000 14767000 7986300 6780800 8071000 3163800 4907200 0 0 0 1707700 803190 904470 1778 3260 1853 9135;9136;9137;9138;9139 9403;9404;9405;9406;9407 9407 5 ALDQASEEIWNDFR DGRTAAWRTTSEEKKALDQASEEIWNDFRE KALDQASEEIWNDFREAAEAHRQVRKYVMS K A L F R E 2 1 1 2 0 1 2 0 0 1 1 0 0 1 0 1 0 1 0 0 0 0 14 0 1692.7744 P50579;F8VRR3;F8VQZ7;G3V1U3;F8VZX9;F8VY03 P50579 157 170 METAP2 Methionine aminopeptidase 2 yes no 2 0.00016414 79.693 By matching By MS/MS By matching 1 1 1 0.78793 0.69012 46.634 3 Median NaN NaN NaN 0 0 Median 0.7063 0.63198 NaN 1 0 Median 1.4166 1.4758 NaN 1 0 Median 0.78793 0.69012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4167600 1645200 2522500 0 0 0 302000 194550 107450 3584200 1296500 2287700 281410 154130 127280 0 0 0 0 0 0 1779 2418 1854 9140;9141;9142 9408;9409 9408 2 ALDQFVNFSEQK QCNTELKKYSHVNKKALDQFVNFSEQKEKL NKKALDQFVNFSEQKEKLIKRQEELDRGYK K A L Q K E 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1424.6936 Q9UQE7 Q9UQE7 986 997 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.5969E-06 113.93 By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1.1138 1.0658 3.5157 6 Median 1.0102 0.9983 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98908 1.0534 NaN 1 0 Median 1.2365 1.0862 0.41024 2 0 Median 1.0292 1.0783 NaN 1 0 Median 1.2328 1.0232 NaN 1 0 Median 59064000 29488000 29576000 3304100 1413600 1890500 0 0 0 26844000 14205000 12639000 3712000 1615600 2096400 24112000 11753000 12358000 1092700 500870 591810 1780 4362 1855 9143;9144;9145;9146;9147;9148 9410;9411;9412 9412 3 ALDQFVNFSEQKEK QCNTELKKYSHVNKKALDQFVNFSEQKEKL KALDQFVNFSEQKEKLIKRQEELDRGYKSI K A L E K L 1 0 1 1 0 2 2 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 14 1 1681.8312 Q9UQE7 Q9UQE7 986 999 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 2.3965E-06 148.28 By matching By MS/MS By MS/MS By matching 1 2 3 2 1.0279 1.1958 16.22 8 Median 1.1986 1.2629 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.025 1.1958 2.9499 2 0 Median NaN NaN NaN 0 0 Median 1.0109 1.0993 9.3497 3 0 Plateau 1.5914 1.4289 8.7569 2 0 Median 115340000 55956000 59388000 4017300 1818600 2198700 0 0 0 53751000 25215000 28537000 0 0 0 55646000 28168000 27478000 1929500 755280 1174200 1781 4362 1856 9149;9150;9151;9152;9153;9154;9155;9156 9413;9414;9415;9416;9417;9418;9419;9420;9421;9422 9419 10 ALDQSDNDMSAVYR TPMAAAANEVYKRAKALDQSDNDMSAVYRA KALDQSDNDMSAVYRAYIH___________ K A L Y R A 2 1 1 3 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 14 0 1583.6886 Q49A26;K7EMM8 Q49A26 536 549 GLYR1 Putative oxidoreductase GLYR1 yes no 2 4.9233E-11 173.71 By MS/MS By MS/MS By MS/MS 3 2 6 0.82539 0.85745 30.978 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85147 0.84815 56.721 3 0 Median 1.0328 0.8809 2.5318 2 0 Median 0.81301 0.83856 20.423 6 0 Median NaN NaN NaN 0 0 Median 49905000 26133000 23772000 0 0 0 0 0 0 20348000 10725000 9623300 4437100 2134500 2302700 25120000 13274000 11846000 0 0 0 1782 3018 1857;1858 9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167 9423;9424;9425;9426;9427;9428;9429;9430 9428 1651 8 ALDTMNFDVIK GYAYVNFQQPADAERALDTMNFDVIKGKPV DAERALDTMNFDVIKGKPVRIMWSQRDPSL R A L I K G 1 0 1 2 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1265.6326 B1ANR0;Q13310;B1ANR1;H0YEQ8;P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YBN4;E5RGH3;E5RJB9;E5RH24 P11940 68 78 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 2 0.00015337 82.749 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 3 1 1.1704 1.0779 15.032 12 Median 1.1704 1.0779 6.0482 4 0 Median 1.1201 0.95744 7.0811 2 0 Median 1.2712 1.2549 NaN 1 0 Median 1.1996 1.0415 NaN 1 0 Median 1.3369 1.3196 11.716 3 0 Median 1.1249 0.94925 NaN 1 0 Median 178100000 79775000 98325000 107490000 48365000 59128000 21560000 9903800 11656000 43026000 18851000 24175000 1613700 712860 900810 3151600 1377300 1774400 1255100 564570 690530 1783 1973;576 1859 9168;9169;9170;9171;9172;9173;9174;9175;9176;9177;9178;9179 9431;9432;9433;9434;9435;9436;9437;9438;9439 9434 9 ALDTTDMER QISADPDKPLADGIRALDTTDMERLKDVQS LADGIRALDTTDMERLKDVQSMDELKDVYN R A L E R L 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 9 0 1050.4652 Q7KZ85 Q7KZ85 442 450 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0025948 70.919 By matching By MS/MS 1 1 1.1093 1.0362 1.2878 2 Median NaN NaN NaN 0 0 Median 1.2306 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1 1.0457 NaN 1 0 Median NaN NaN NaN 0 0 Median 2979200 1407600 1571600 0 0 0 1209800 587050 622720 0 0 0 0 0 0 1769500 820560 948900 0 0 0 1784 3213 1860 9180;9181 9440 9440 1 ALDTVLFGPPLLTR LKMTDRSHRQKLQLKALDTVLFGPPLLTRH KALDTVLFGPPLLTRHNHLKDFMLVVSIVI K A L T R H 1 1 0 1 0 0 0 1 0 0 4 0 0 1 2 0 2 0 0 1 0 0 14 0 1511.8712 Q13586;E9PNJ4;G0XQ39;E9PIQ8 Q13586 194 207 STIM1 Stromal interaction molecule 1 yes no 2 6.5062E-05 84.17 By MS/MS By MS/MS By MS/MS 1 2 2 0.75249 0.75722 40.484 5 Median 0.75249 0.74576 NaN 1 0 Median 0.58413 0.51204 66.173 2 0 Median 0.75249 0.79493 6.8738 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10405000 5417700 4987700 1607500 889990 717560 6649600 3343300 3306200 2148400 1184400 963930 0 0 0 0 0 0 0 0 0 1785 2827 1861 9182;9183;9184;9185;9186 9441;9442;9443;9444;9445;9446;9447;9448;9449 9448 9 ALDVADLQK NQKQGRFRSLEEALKALDVADLQKELDKSQ LEEALKALDVADLQKELDKSQSVFSGNPSI K A L Q K E 2 0 0 2 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 971.52876 Q6NUQ4;H7C0H8 Q6NUQ4 117 125 TMEM214 Transmembrane protein 214 yes no 2 0.00045161 95.909 By MS/MS 1 0.70617 0.71197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70617 0.71197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13551000 8400200 5150800 0 0 0 0 0 0 13551000 8400200 5150800 0 0 0 0 0 0 0 0 0 1786 3145 1862 9187 9450 9450 1 ALDVDYR ESLKEIQRARSIYERALDVDYRNITLWLKY RARSIYERALDVDYRNITLWLKYAEMEMKN R A L Y R N 1 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 850.41848 Q5JY65;Q9BZJ0 Q5JY65 256 262 CRNKL1 Crooked neck-like protein 1 yes no 2 0.0083653 86.086 By MS/MS 1 0.97428 1.0075 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97428 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6318200 3135000 3183200 0 0 0 0 0 0 6318200 3135000 3183200 0 0 0 0 0 0 0 0 0 1787 3061 1863 9188 9451;9452 9451 2 ALDVGSGSGILTACFAR YALELLFDQLHEGAKALDVGSGSGILTACF DVGSGSGILTACFARMVGCTGKVIGIDHIK K A L A R M 3 1 0 1 1 0 0 3 0 1 2 0 0 1 0 2 1 0 0 1 0 0 17 0 1693.8458 A0A0A0MRJ6;H7BY58;P22061;A0A3F2YNX8;C9J0F2 A0A0A0MRJ6 140 156 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2 2.0731E-05 67.456 By MS/MS 1 0.91586 0.86444 NaN 1 Median 0.91586 0.86444 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5118900 2794800 2324100 5118900 2794800 2324100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1788 163 1864 9189 9453 9453 1 ALDVIQAGK DKAYKLLLDQEQKKRALDVIQAGKEYVEHT QEQKKRALDVIQAGKEYVEHTVKERKKQLK R A L G K E 2 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 913.52328 O75937 O75937 119 127 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.00093857 89.55 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.3027 1.0956 43.239 5 Median NaN NaN NaN 0 0 Median 1.3358 1.1376 5.3223 2 0 Median 2.4986 2.4078 NaN 1 0 Median 1.2942 1.0761 NaN 1 0 Median 0.70247 0.73336 NaN 1 0 Median NaN NaN NaN 0 0 Median 105620000 42736000 62879000 0 0 0 11015000 4683000 6332500 25086000 7231500 17854000 64108000 27872000 36236000 5406400 2949800 2456600 0 0 0 1789 1709 1865 9190;9191;9192;9193;9194 9454;9455;9456;9457;9458 9456 5 ALDVMVSTFHK ______________________________ PLEKALDVMVSTFHKYSGKEGDKFKLNKSE K A L H K Y 1 0 0 1 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 2 0 0 11 0 1246.638 P26447 P26447 8 18 S100A4 Protein S100-A4 yes yes 2;3 0.00014032 81.338 By MS/MS 2 1.1618 1.0557 1.8995 2 Median 1.1618 1.0557 1.8995 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28216000 12506000 15710000 28216000 12506000 15710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1790 2145 1866 9195;9196 9459;9460;9461;9462 9461 4 ALDVSASDDEIAR AEKKRPKAESFFQTKALDVSASDDEIARLK TKALDVSASDDEIARLKKPDQAIKGDQFVF K A L A R L 3 1 0 3 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1360.647 C9JIF9;P13798;H7C393;H7C1U0;C9JLK2 C9JIF9 181 193 APEH Acylamino-acid-releasing enzyme yes no 2 2.0999E-05 143.96 By MS/MS By MS/MS 1 2 1.058 0.94067 8.6017 3 Median 0.99475 0.94067 NaN 1 0 Median 1.1481 0.99413 11.296 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41776000 20857000 20919000 27521000 14492000 13028000 14255000 6364600 7890700 0 0 0 0 0 0 0 0 0 0 0 0 1791 699 1867 9197;9198;9199 9463;9464;9465;9466;9467 9466 5 ALDVTDKEGEEREDADVSVTQR AVQQFYQPKIQQFLRALDVTDKEGEEREDA EGEEREDADVSVTQRTAFQIRQFQRSLLNL R A L Q R T 2 2 0 4 0 1 4 1 0 0 1 1 0 0 0 1 2 0 0 3 0 0 22 2 2461.1569 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 933 954 FANCI Fanconi anemia group I protein yes no 3 0.01077 20.625 By MS/MS 1 0.87234 0.98342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87234 0.98342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5363500 3559400 1804100 0 0 0 0 0 0 5363500 3559400 1804100 0 0 0 0 0 0 0 0 0 1792 4132 1868 9200 9468 9468 1 ALDWAIPQQR PNEENNGKSMSLKNKALDWAIPQQRSSSCP SLKNKALDWAIPQQRSSSCPRMGGTDAVIT K A L Q R S 2 1 0 1 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 10 0 1196.6302 Q6W2J9;H7BYY2 Q6W2J9 531 540 BCOR BCL-6 corepressor yes no 2 0.002709 72.547 By MS/MS 1 0.76929 0.84566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76929 0.84566 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6033500 3775700 2257800 0 0 0 0 0 0 6033500 3775700 2257800 0 0 0 0 0 0 0 0 0 1793 3191 1869 9201 9469 9469 1 ALDYYMLR SDDDPKKGIWLEAGKALDYYMLRNGDTMEY IWLEAGKALDYYMLRNGDTMEYRKKQRPLK K A L L R N 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 2 0 0 0 8 0 1043.511 Q9Y490 Q9Y490 67 74 TLN1 Talin-1 yes yes 2 0.0028554 104.11 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 2 2 1.2097 1.0321 42.785 9 Median 0.84219 0.80623 34.93 2 0 Median 1.2892 1.1043 14.627 2 0 Median 0.77509 0.77779 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0654 2.0799 38.248 2 1 Median 1.1152 0.98467 16.242 2 0 Median 26666000 12858000 13808000 10790000 5552800 5237200 8034800 3578200 4456700 4926900 2688300 2238700 0 0 0 2596300 879540 1716800 317830 159550 158280 1794 4441 1870 9202;9203;9204;9205;9206;9207;9208;9209;9210 9470;9471;9472;9473;9474 9470 5 ALEAAHGPGQANQEIAAMIDTEFAK GVTGFLVLMSEGLYKALEAAHGPGQANQEI ANQEIAAMIDTEFAKQTSLDAVAQAVVDRV K A L A K Q 7 0 1 1 0 2 3 2 1 2 1 1 1 1 1 0 1 0 0 0 0 0 25 0 2582.2435 Q15750 Q15750 295 319 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes yes 3 0.062556 6.4334 By MS/MS 1 0.87976 0.85164 NaN 1 Median 0.87976 0.85164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1399200 717180 681990 1399200 717180 681990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1795 2967 1871 9211 9475 9475 1 ALEAANADLEVK QNLNDRLASYLDKVRALEAANADLEVKIRD KVRALEAANADLEVKIRDWHLKQSPASPER R A L V K I 4 0 1 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1242.6456 CON__P08730-1 CON__P08730-1 116 127 yes yes 2 3.3934E-06 108.67 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 3 1 2 2 1.0848 1.0362 22.407 9 Median 0.94761 0.86922 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97151 0.95247 2.8368 3 0 Median 1.6962 1.5163 NaN 1 0 Median 1.1623 1.1379 13.241 2 1 Median 1.8419 1.4819 9.6821 2 0 Median 371210000 184990000 186220000 64456000 32087000 32369000 0 0 0 217530000 109960000 107560000 3415300 1461800 1953500 52451000 28203000 24248000 33365000 13278000 20087000 + 1796 753 1872 9212;9213;9214;9215;9216;9217;9218;9219;9220 9476;9477;9478;9479;9480;9481;9482;9483;9484;9485;9486;9487 9476 12 ALEAANGELEVK QNLNDRLASYLDKVRALEAANGELEVKIRD KVRALEAANGELEVKIRDWYQKQGPGPSRD R A L V K I 3 0 1 0 0 0 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1242.6456 CON__P08727;P08727 CON__P08727 100 111 KRT19 Keratin, type I cytoskeletal 19 yes no 2 4.1536E-08 134.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.3882 1.1885 19.774 5 Median NaN NaN NaN 0 0 Median 1.9145 1.6315 NaN 1 0 Median 0.97151 0.99963 NaN 1 0 Median 1.3882 1.1885 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4967 1.2186 17.982 2 0 Median 283780000 135080000 148700000 0 0 0 12870000 4521700 8348000 205680000 103670000 102010000 28053000 11368000 16685000 0 0 0 37180000 15524000 21656000 + 1797 752 1873 9221;9222;9223;9224;9225;9226 9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498 9491 11 ALEATTEHIR KTVKAVEDEATKGTRALEATTEHIRQELAV TKGTRALEATTEHIRQELAVFCSPEPPAKT R A L I R Q 2 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1139.5935 Q9Y490 Q9Y490 2145 2154 TLN1 Talin-1 yes yes 2 0.00070717 97.431 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.1527 1.0122 85.804 5 Median 0.9503 0.95427 NaN 1 0 Median 0.48642 0.43445 135.35 2 0 Median 1.2365 1.3774 NaN 1 0 Median 1.1527 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7723200 4035000 3688100 1628700 810620 818080 4635800 2602800 2033000 858710 358230 500480 599960 263370 336590 0 0 0 0 0 0 1798 4441 1874 9227;9228;9229;9230;9231 9499;9500;9501;9502;9503;9504 9502 6 ALEAVFGK GKLFIGGLNTETNEKALEAVFGKYGRIVEV NTETNEKALEAVFGKYGRIVEVLLMKDRET K A L G K Y 2 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 833.4647 P38159;H3BT71;H0Y6E7;H3BR27;H3BNC1 P38159 23 30 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 0.0034636 94.662 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 6 3 1.4628 1.2894 19.736 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2225 1.3649 27.45 3 0 Median 1.4787 1.2253 17.028 5 0 Median 1.1471 1.1497 26.151 5 1 Median 1.6632 1.3567 13.952 3 0 Median 200640000 92170000 108470000 0 0 0 0 0 0 15066000 7707800 7358100 34511000 14313000 20198000 126260000 59952000 66305000 24807000 10198000 14609000 1799 2273 1875 9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248 9505;9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517;9518;9519;9520;9521;9522;9523;9524;9525;9526;9527 9519 23 ALEDAQAVNEQLSSER GENLRLQGLVRQKERALEDAQAVNEQLSSE LEDAQAVNEQLSSERSNLAQVIRQEFEDRL R A L E R S 3 1 1 1 0 2 3 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1758.8384 Q9UPN4;I3L2X7;I3L2J8;I3L316;I3L4M5 Q9UPN4 978 993 CEP131 Centrosomal protein of 131 kDa yes no 2 8.7485E-10 102.66 By MS/MS By MS/MS 1 1 0.90177 0.81832 1.4411 2 Median 0.85431 0.82671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95187 0.81003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6401000 2915800 3485200 3793100 1643600 2149600 0 0 0 0 0 0 2607800 1272300 1335600 0 0 0 0 0 0 1800 4355 1876 9249;9250 9528;9529;9530 9529 3 ALEDFLASLR EGMNHRVQRSEDTLKALEDFLASLRTAKLS EDTLKALEDFLASLRTAKLSAEPVTDLSAS K A L L R T 2 1 0 1 0 0 1 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 10 0 1133.6081 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1324 1333 SYNE2 Nesprin-2 yes no 2 0.0034408 56.729 By MS/MS By MS/MS By matching 1 1 1 1.5403 1.2323 56.191 3 Median 0.64133 0.64933 NaN 1 0 Median 1.5403 1.2323 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2954 1.99 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25317000 10084000 15233000 2192100 1295600 896460 23031000 8758300 14272000 0 0 0 94812 30283 64528 0 0 0 0 0 0 1801 3521 1877 9251;9252;9253 9531;9532 9532 2 ALEDIDEK IVPAEIESQVEECRKALEDIDEKISNEVLK QVEECRKALEDIDEKISNEVLKSSPSYAMR K A L E K I 1 0 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 931.44984 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3667 3674 SYNE2 Nesprin-2 yes no 2 0.021359 45.718 By MS/MS By matching 1 1 0.92742 0.93515 17.093 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75024 0.82868 NaN 1 0 Median 1.1465 1.0553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1305100 810680 494400 0 0 0 0 0 0 886850 557200 329640 418220 253470 164750 0 0 0 0 0 0 1802 3521 1878 9254;9255 9533;9534 9534 2 ALEDLAGFK PGSKRQLQTPKEKAQALEDLAGFKELFQTP PKEKAQALEDLAGFKELFQTPGHTEELVAA Q A L F K E 2 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 962.5073 P46013 P46013 1220 1228 MKI67 Antigen KI-67 yes yes 2 0.00074849 100.45 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 1 1.034 0.97839 21.634 9 Median 0.95414 0.95951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0558 1.1493 0.14266 2 0 Median 0.97777 0.88021 13.373 4 0 Median 1.3501 1.4191 NaN 1 0 Median 0.85775 0.73732 NaN 1 0 Median 36631000 16849000 19782000 1602200 795920 806310 0 0 0 28013000 12726000 15288000 2615600 1283700 1331900 3693400 1735200 1958200 706550 308930 397620 1803 2335 1879 9256;9257;9258;9259;9260;9261;9262;9263;9264 9535;9536;9537;9538;9539;9540;9541;9542 9536 8 ALEDLVDFK TGSRRQLRTRKEKARALEDLVDFKELFSAP RKEKARALEDLVDFKELFSAPGHTEESMTI R A L F K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 P46013 P46013 2555 2563 MKI67 Antigen KI-67 yes yes 2 0.0025948 70.919 By MS/MS By matching By matching 3 3 2 1.0252 1.0996 17.278 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0357 1.1143 19.625 3 0 Plateau 1.0148 1.1588 14.307 3 0 Plateau 1.2003 1.2531 4.8361 2 0 Median NaN NaN NaN 0 0 Median 13554000 6279000 7275100 0 0 0 0 0 0 8101700 4211200 3890600 1806100 778350 1027700 3646200 1289400 2356800 0 0 0 1804 2335 1880 9265;9266;9267;9268;9269;9270;9271;9272 9543;9544;9545 9544 3 ALEDMFDALEGK YPGRNAREFLQCVEKALEDMFDALEGKSIK VEKALEDMFDALEGKSIKS___________ K A L G K S 2 0 0 2 0 0 2 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 12 0 1337.6173 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GTM0 A0A1B0GTB8 620 631 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.00043077 78.934 By MS/MS By MS/MS 1 1 1.3119 1.1899 19.183 2 Median 1.0754 1.039 NaN 1 0 Median 1.6005 1.3628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6506300 2538500 3967800 2037400 989550 1047800 4469000 1549000 2920000 0 0 0 0 0 0 0 0 0 0 0 0 1805 317 1881 9273;9274 9546;9547;9548 9548 3 ALEDVDYVQTFK DIKSLTAHVIENYWKALEDVDYVQTFKGLK YWKALEDVDYVQTFKGLKLRFEQQRERQDN K A L F K G 1 0 0 2 0 1 1 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 12 0 1426.698 G3V5Z3;Q6IN85 G3V5Z3 614 625 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A yes no 2 0.001556 81.338 By MS/MS 1 1.3764 1.3433 NaN 1 Median 1.3764 1.3433 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4851700 1612100 3239600 4851700 1612100 3239600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1806 1121 1882 9275 9549 9549 1 ALEEAGFK DVDRSGTMNSYEMRKALEEAGFKMPCQLHQ NSYEMRKALEEAGFKMPCQLHQVIVARFAD K A L F K M 2 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 863.43888 P17655 P17655 630 637 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.0023729 91.906 By MS/MS By MS/MS By matching 1 1 2 1.1081 0.96798 31.177 4 Median 0.96006 0.94236 NaN 1 0 Median 0.98101 0.86668 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6251 1.3087 38.859 2 0 Median 8570500 3835700 4734800 2278400 1086800 1191600 2249400 1059100 1190400 0 0 0 0 0 0 0 0 0 4042600 1689800 2352800 1807 2045 1883 9276;9277;9278;9279 9550;9551 9551 2 ALEEALEAK AEAREKETKALSLARALEEALEAKEEFERQ ALSLARALEEALEAKEEFERQNKQLRADME R A L A K E 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 972.51278 P35580 P35580 1491 1499 MYH10 Myosin-10 no no 2 0.00050786 119.27 By MS/MS By MS/MS 1 1 0.75062 0.74556 43.685 2 Median NaN NaN NaN 0 0 Median 1.1454 1.0154 NaN 1 0 Median 0.49192 0.54743 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8262500 3990400 4272100 0 0 0 6167800 2623400 3544400 2094700 1367000 727690 0 0 0 0 0 0 0 0 0 1808 2245 1884 9280;9281 9552;9553;9554 9554 3 ALEEALEAKEEFER AEAREKETKALSLARALEEALEAKEEFERQ RALEEALEAKEEFERQNKQLRADMEDLMSS R A L E R Q 3 1 0 0 0 0 6 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 14 1 1662.8101 P35580 P35580 1491 1504 MYH10 Myosin-10 yes yes 2;3 3.8586E-42 220.23 By MS/MS By MS/MS 1 2 1.1121 1.044 14.602 3 Median 0.92796 0.92769 NaN 1 0 Median 1.207 1.1379 12.182 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41328000 19879000 21449000 26323000 12958000 13365000 15006000 6921300 8084300 0 0 0 0 0 0 0 0 0 0 0 0 1809 2245 1885 9282;9283;9284 9555;9556;9557;9558;9559;9560 9555 6 ALEEAMEQK AEAREKETKALSLARALEEAMEQKAELERL ALSLARALEEAMEQKAELERLNKQFRTEME R A L Q K A 2 0 0 0 0 1 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 P35579 P35579 1484 1492 MYH9 Myosin-9 yes yes 2 0.00034134 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 2 1 1.11 1.0213 31.314 9 Median 1.2412 1.1925 NaN 1 0 Median 0.9676 0.84352 42.49 3 1 Median 0.92811 1.0235 NaN 1 0 Median 1.11 1.0012 NaN 1 0 Median 1.1227 1.1674 0.019037 2 0 Median 1.1918 1.0213 NaN 1 0 Median 138730000 69927000 68807000 25249000 11226000 14023000 74447000 39721000 34726000 14651000 7399700 7251000 4422800 2137900 2284800 17894000 8529700 9363800 2070800 912980 1157800 1810 2244 1886 9285;9286;9287;9288;9289;9290;9291;9292;9293 9561;9562;9563;9564;9565;9566;9567;9568;9569;9570;9571;9572;9573;9574;9575 9566 15 ALEEAMEQKAELER AEAREKETKALSLARALEEAMEQKAELERL RALEEAMEQKAELERLNKQFRTEMEDLMSS R A L E R L 3 1 0 0 0 1 5 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 14 1 1645.7981 P35579 P35579 1484 1497 MYH9 Myosin-9 yes yes 2;3 1.665E-11 180.88 By MS/MS By MS/MS By MS/MS By matching 6 2 3 1 1.056 1.1262 13.216 11 Median 1.2004 1.1958 11.873 6 2 Median NaN NaN NaN 0 0 Median 0.80239 0.9617 9.8417 2 0 Median NaN NaN NaN 0 0 Median 0.95025 1.0752 10.334 2 1 Median 1.056 0.92476 NaN 1 0 Median 178910000 80848000 98066000 158490000 70772000 87717000 0 0 0 12512000 6167500 6344600 0 0 0 6999000 3430000 3569000 913860 478050 435810 1811 2244 1887;1888 9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305 9576;9577;9578;9579;9580;9581;9582;9583;9584;9585;9586 9581 982 10 ALEEANADLEVK QNLNDRLASYLDKVRALEEANADLEVKIRD KVRALEEANADLEVKIRDWYQRQRPAEIKD R A L V K I 3 0 1 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1300.6511 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9;CON__P08779;P08779;P02533;CON__P02533;CON__Q6IFX2 P02533 135 146 KRT13;KRT16;KRT14 Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2 1.7002E-64 205.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 5 5 6 5 0.13149 0.12357 79.062 25 Median 0.23398 0.22657 58.72 4 4 Median 0.19119 0.16727 75.589 2 2 Median 0.31305 0.34548 85.908 5 5 Median 0.074554 0.0654 46.421 5 5 Median 0.10869 0.11058 67.959 5 5 Median 0.19345 0.1587 45.705 4 4 Median 618200000 468090000 150110000 143190000 107390000 35803000 54274000 42004000 12270000 211480000 136030000 75452000 49538000 45453000 4085000 126560000 111570000 14991000 33149000 25639000 7510000 + 1812 739;754;787;736 1889 9306;9307;9308;9309;9310;9311;9312;9313;9314;9315;9316;9317;9318;9319;9320;9321;9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332 9587;9588;9589;9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611;9612;9613;9614;9615;9616;9617 9605 31 ALEEANTELEVK QNLNDRLASYLDKVRALEEANTELEVKIRD KVRALEEANTELEVKIRDWYQRQAPGPARD R A L V K I 2 0 1 0 0 0 4 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1344.6773 CON__Q04695;Q04695;K7EPJ9 CON__Q04695 104 115 KRT17 Keratin, type I cytoskeletal 17 no no 2 1.337E-21 190.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 5 4 6 0.67571 0.59926 143.99 22 Median 1.1966 1.0684 78.093 2 1 Median 0.90693 0.77314 15.071 2 1 Median 0.5721 0.54724 101.26 3 1 Median 0.57825 0.49356 91.478 5 2 Median 0.95963 0.96009 212.1 4 2 Median 0.66103 0.5581 182.56 6 2 Median 652630000 311410000 341220000 8201200 3956100 4245000 14341000 7391600 6949700 189480000 83533000 105950000 179950000 103460000 76484000 82869000 26693000 56176000 177790000 86376000 91416000 + 1813 768 1890 9333;9334;9335;9336;9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354;9355 9618;9619;9620;9621;9622;9623;9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639 9626 22 ALEEDIENHATDVHQAVK GTQTAKIQQQIIRHKALEEDIENHATDVHQ EDIENHATDVHQAVKIGQSLSSLTSPAEQG K A L V K I 3 0 1 2 0 1 3 0 2 1 1 1 0 0 0 0 1 0 0 2 0 0 18 0 2017.9705 H3BPE1;H3BQK9;A0A590UJG2;A0A0A6YYJ5 H3BPE1 5493 5510 MACF1 yes no 3;4 4.1944E-07 83.418 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.018 0.97512 91.713 7 Median 0.94502 0.94733 11.773 2 0 Median 1.1165 0.99242 3.9063 2 0 Median 0.96366 1.0353 8.4685 2 0 Median 0.10385 0.088197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93336000 48621000 44715000 39364000 19731000 19633000 32227000 15276000 16951000 16168000 8566200 7601600 5577500 5048400 529040 0 0 0 0 0 0 1814 1220 1891 9356;9357;9358;9359;9360;9361;9362 9640;9641;9642;9643;9644;9645;9646;9647 9641 8 ALEEELAGLK KDVQDELRIKENELRALEEELAGLKNTAEK ENELRALEEELAGLKNTAEKYRQLKQQWEM R A L L K N 2 0 0 0 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1071.5812 O95347 O95347 697 706 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00035707 107.29 By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 0.93986 0.82607 12.823 8 Median NaN NaN NaN 0 0 Median 0.8234 0.69681 NaN 1 0 Median 0.92699 0.9886 NaN 1 0 Median 1.0105 0.87994 7.4512 3 0 Median NaN NaN NaN 0 0 Median 0.9529 0.81312 10.947 3 0 Median 40072000 19484000 20588000 0 0 0 11048000 5483900 5564600 18445000 9021400 9423900 8348700 3989000 4359700 0 0 0 2230000 989890 1240100 1815 1766 1892 9363;9364;9365;9366;9367;9368;9369;9370 9648;9649;9650;9651 9649 4 ALEEELAGLKNTAEK KDVQDELRIKENELRALEEELAGLKNTAEK ALEEELAGLKNTAEKYRQLKQQWEMKTEEA R A L E K Y 3 0 1 0 0 0 4 1 0 0 3 2 0 0 0 0 1 0 0 0 0 0 15 1 1614.8465 O95347 O95347 697 711 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 0.00012012 61.409 By MS/MS By matching 1 1 0.93969 1.0399 0.0090277 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89984 1.04 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98131 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median 12434000 6089800 6344400 0 0 0 0 0 0 10190000 5178700 5011200 0 0 0 2244300 911070 1333300 0 0 0 1816 1766 1893 9371;9372 9652;9653 9652 2 ALEEEQEAREELER AEGREREARALSLTRALEEEQEAREELERQ RALEEEQEAREELERQNRALRAELEALLSS R A L E R Q 2 2 0 0 0 1 7 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 14 1 1729.8119 Q7Z406;A1L2Z2 Q7Z406 1508 1521 MYH14 Myosin-14 yes no 3 0.00091966 40.552 By matching By MS/MS 1 1 1.3482 1.4011 10.178 2 Median 1.4079 1.5056 NaN 1 0 Median 1.2911 1.3038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4787800 1920700 2867100 2842600 1027600 1815000 1945100 893030 1052100 0 0 0 0 0 0 0 0 0 0 0 0 1817 3242 1894 9373;9374 9654 9654 1 ALEEETKNHEAQIQDMR ELRTKREQEVAELKKALEEETKNHEAQIQD EEETKNHEAQIQDMRQRHATALEELSEQLE K A L M R Q 2 1 1 1 0 2 4 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 17 1 2040.9535 P35580 P35580 1182 1198 MYH10 Myosin-10 yes yes 2;3;4 8.1716E-19 171.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 1.0428 1.0216 27.134 11 Median 1.0428 1.0352 8.6261 3 0 Median 1.1573 1.0821 4.7776 2 0 Median 0.60508 0.72521 3.0412 2 0 Median 1.3503 1.3036 34.465 2 0 Median 0.61485 0.69707 15.451 2 0 Median NaN NaN NaN 0 0 Median 199650000 97664000 101980000 119130000 56906000 62229000 34515000 14968000 19547000 30373000 18046000 12328000 2986000 1178200 1807800 12636000 6566500 6069800 0 0 0 1818 2245 1895 9375;9376;9377;9378;9379;9380;9381;9382;9383;9384;9385 9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669 9667 15 ALEEGDGSVSGSSPR LELELVLERKKAELRALEEGDGSVSGSSPR ALEEGDGSVSGSSPRSDISQPASQDGMRRL R A L P R S 1 1 0 1 0 0 2 3 0 0 1 0 0 0 1 4 0 0 0 1 0 0 15 0 1446.6587 Q8N3X1 Q8N3X1 420 434 FNBP4 Formin-binding protein 4 yes yes 2 0.00020074 67.153 By MS/MS By MS/MS 1 1 0.75819 0.73592 8.3922 2 Median NaN NaN NaN 0 0 Median 0.8009 0.69352 NaN 1 1 Median 0.71775 0.78092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3024100 1684700 1339400 0 0 0 1385400 714450 670930 1638700 970260 668450 0 0 0 0 0 0 0 0 0 1819 3370 1896 9386;9387 9670;9671;9672 9672 3 ALEENNNFSK QLAEKREHEREVLQKALEENNNFSKMAEEK EVLQKALEENNNFSKMAEEKLILKMEQIKE K A L S K M 1 0 3 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5411 E5RGX5;Q93045 E5RGX5 109 118 STMN2 Stathmin;Stathmin-2 yes no 2 0.0011606 67.993 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.0066 0.94626 18.862 5 Median 1.136 1.0679 17.103 2 0 Median 1.1443 0.97882 NaN 1 0 Median 0.83742 0.80993 NaN 1 0 Median 0.89392 0.73804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57336000 27595000 29741000 38030000 18155000 19876000 13313000 6232900 7079800 5014500 2646800 2367700 978910 560610 418300 0 0 0 0 0 0 1820 843 1897 9388;9389;9390;9391;9392 9673;9674;9675;9676 9675 4 ALEESESSQLISPPLAQAIR RSHISDQSPLSSKRKALEESESSQLISPPL ESSQLISPPLAQAIRDYVNSLLVQGGVGSL K A L I R D 3 1 0 0 0 2 3 0 0 2 3 0 0 0 2 4 0 0 0 0 0 0 20 0 2138.1219 P42166 P42166 359 378 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 6.6933E-31 182.02 By matching By MS/MS By MS/MS By MS/MS 1 4 3 2 0.74799 0.71631 24.251 10 Median NaN NaN NaN 0 0 Median 1.1965 1.1379 NaN 1 0 Median 0.65118 0.67132 29.992 4 0 Median 0.81366 0.7143 19.082 3 0 Median 0.64875 0.69165 5.3518 2 0 Median NaN NaN NaN 0 0 Median 39790000 23850000 15939000 0 0 0 2692200 1201000 1491200 32156000 19909000 12247000 1922800 983870 938950 3018500 1756700 1261700 0 0 0 1821 2306 1898 9393;9394;9395;9396;9397;9398;9399;9400;9401;9402 9677;9678;9679;9680;9681;9682;9683;9684;9685 9679 9 ALEESNYELEGK QNLNDRLASYLDKVRALEESNYELEGKIKE KVRALEESNYELEGKIKEWYEKHGNSHQGE R A L G K I 1 0 1 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1380.6409 P13645;CON__P13645;CON__P02535-1 P13645 166 177 KRT10 Keratin, type I cytoskeletal 10 no no 2 4.5773E-51 190.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 11 9 12 6 6 0.027808 0.025829 137.12 51 Median 0.028269 0.025829 145.19 11 11 Median 0.035909 0.030737 136.05 11 11 Median 0.021712 0.02084 156.48 8 8 Median 0.011385 0.0096436 132.83 10 10 Median 0.032393 0.031066 159.24 5 5 Median 0.040439 0.032718 113.84 6 6 Median 4258000000 4086600000 171480000 984360000 937030000 47321000 673010000 621890000 51125000 625750000 597440000 28309000 959980000 938590000 21390000 724020000 708560000 15456000 290930000 283050000 7882500 + 1822 756;740 1899 9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434;9435;9436;9437;9438;9439;9440;9441;9442;9443;9444;9445;9446;9447;9448;9449;9450;9451;9452;9453;9454;9455;9456;9457 9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698;9699;9700;9701;9702;9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735;9736;9737;9738;9739;9740;9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760 9728 75 ALEESNYELEGKIK QNLNDRLASYLDKVRALEESNYELEGKIKE RALEESNYELEGKIKEWYEKHGNSHQGEPR R A L I K E 1 0 1 0 0 0 4 1 0 1 2 2 0 0 0 1 0 0 1 0 0 0 14 1 1621.8199 P13645;CON__P13645;CON__P02535-1 P13645 166 179 KRT10 Keratin, type I cytoskeletal 10 no no 2;3 0.00015996 69.349 By MS/MS 2 0.038048 0.038655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.038048 0.038655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4907200 4762500 144740 0 0 0 0 0 0 0 0 0 4907200 4762500 144740 0 0 0 0 0 0 + 1823 756;740 1900 9458;9459 9761;9762 9761 2 ALEFETIKR A L K R 1 1 0 0 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 1 1105.6132 REV__Q86XX4 yes yes 2 0.036298 37.558 By MS/MS 1 0.96279 1.0027 NaN 1 Median 0.96279 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8418600 4389800 4028800 8418600 4389800 4028800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 1824 4549 1901 9460 9763 9763 1 ALEFGEPVLLVGDTGCGK VWTEGMRRLAMLVGRALEFGEPVLLVGDTG FGEPVLLVGDTGCGKTTICQVFAALANQKL R A L G K T 1 0 0 1 1 0 2 4 0 0 3 1 0 1 1 0 1 0 0 2 0 0 18 0 1860.9291 Q9NU22 Q9NU22 1379 1396 MDN1 Midasin yes yes 2 1.2419E-05 51.013 By MS/MS 2 1.4769 1.7621 80.992 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4769 1.7621 80.992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4855800 2458500 2397300 0 0 0 0 0 0 4855800 2458500 2397300 0 0 0 0 0 0 0 0 0 1825 4112 1902 9461;9462 9764 9764 1 ALEFIPSDQQVINEMVR LSLALQMYGCRVIQKALEFIPSDQQVINEM EFIPSDQQVINEMVRELDGHVLKCVKDQNG K A L V R E 1 1 1 1 0 2 2 0 0 2 1 0 1 1 1 1 0 0 0 2 0 0 17 0 1988.0037 Q5T1Z4;Q5T1Z8;H0YDK8;H0YC97 Q5T1Z4 942 958 PUM1 yes no 2 0.0039626 32.498 By MS/MS By MS/MS By matching 1 1 1 0.73034 0.71627 16.727 3 Median 0.71513 0.71627 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84067 0.90159 NaN 1 0 Median 0.73034 0.65119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2136900 1251300 885550 1369400 885010 484400 0 0 0 698940 330870 368070 68538 35459 33080 0 0 0 0 0 0 1826 3081 1903 9463;9464;9465 9765;9766;9767 9765 3 ALEFVQTESQK IRYQEKISALERTVKALEFVQTESQKDLEI RTVKALEFVQTESQKDLEITKENLAQAVEH K A L Q K D 1 0 0 0 0 2 2 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1278.6456 Q14789 Q14789 2044 2054 GOLGB1 Golgin subfamily B member 1 yes yes 2 1.1752E-08 116.3 By MS/MS By matching 1 1 0.86491 0.74093 48.954 2 Median NaN NaN NaN 0 0 Median 1.1876 1.0474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62988 0.52413 NaN 1 0 Median 11847000 7177300 4670100 0 0 0 9589300 5901600 3687700 0 0 0 0 0 0 0 0 0 2258100 1275700 982440 1827 2900 1904 9466;9467 9768 9768 0 ALEFVTNPDIAAK QKQANEKRALRKKRKALEFVTNPDIAAKKK RKALEFVTNPDIAAKKKMKKHKNKSEAKKR K A L A K K 3 0 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 13 0 1387.7347 O75691 O75691 2732 2744 UTP20 Small subunit processome component 20 homolog yes yes 2 1.4639E-05 95.573 By MS/MS By MS/MS By matching By matching 2 2 1 2 0.99262 0.97415 19.686 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0559 1.1538 23.939 2 0 Median 1.0148 0.93848 7.0173 2 0 Median 0.72472 0.76669 NaN 1 0 Median 1.0375 0.8862 19.701 2 0 Median 16623000 8007500 8615000 0 0 0 0 0 0 12609000 5701200 6907600 1468000 702020 765960 2257600 1457200 800430 288080 147070 141010 1828 1691 1905 9468;9469;9470;9471;9472;9473;9474 9769;9770;9771 9770 3 ALEHAFQLEHIMDLTR TIMQPYFTSNGLVTKALEHAFQLEHIMDLT LEHAFQLEHIMDLTRLRCLGSLFSMLHQAC K A L T R L 2 1 0 1 0 1 2 0 2 1 3 0 1 1 0 0 1 0 0 0 0 0 16 0 1922.9673 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2436 2451 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3;4 1.263E-31 144.27 By MS/MS By MS/MS By matching 3 4 1 1.0959 0.95469 14.307 7 Median 1.0504 1.036 5.3783 2 0 Median 1.0842 0.89045 15.185 4 0 Median NaN NaN NaN 0 0 Median 1.1105 0.95469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146570000 66061000 80510000 17386000 7893800 9491800 128440000 57824000 70620000 0 0 0 741410 342740 398670 0 0 0 0 0 0 1829 2865 1906 9475;9476;9477;9478;9479;9480;9481;9482 9772;9773;9774;9775;9776 9775 5 ALEHFTDLYDIK AHIAQLCEKAGLLQRALEHFTDLYDIKRAV LQRALEHFTDLYDIKRAVVHTHLLNPEWLV R A L I K R 1 0 0 2 0 0 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 12 0 1463.7296 A0A087WVQ6;Q00610 A0A087WVQ6 630 641 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 0.00016877 86.624 By MS/MS By MS/MS By MS/MS By matching By matching 3 5 3 2 1 1.2691 1.1947 19.994 14 Median 1.2771 1.2174 4.2327 3 0 Plateau 1.3752 1.2181 12.971 5 0 Median 1.3826 1.4839 31.99 3 0 Plateau 1.1913 1.0671 7.5593 2 0 Median 0.76957 0.79075 NaN 1 0 Median NaN NaN NaN 0 0 Median 72943000 30717000 42226000 23592000 10426000 13166000 35092000 14467000 20624000 13467000 5464200 8002300 270020 119570 150450 523110 239610 283510 0 0 0 1830 44 1907 9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496 9777;9778;9779;9780;9781;9782;9783;9784 9784 8 ALEHFTDLYDIKR AHIAQLCEKAGLLQRALEHFTDLYDIKRAV QRALEHFTDLYDIKRAVVHTHLLNPEWLVN R A L K R A 1 1 0 2 0 0 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 13 1 1619.8308 A0A087WVQ6;Q00610 A0A087WVQ6 630 642 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3;4 8.6655E-08 130.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 5 6 2 3 1 1.0653 2.3436 29.525 24 Linear 1.2651 1.3177 9.2075 7 2 Median 1.3198 1.2691 31.588 5 0 Median 0.90335 1.0533 44.372 6 1 Median 1.044 1.0079 4.6212 2 1 Median 0.77683 0.85638 10.704 3 1 Median 1.3122 1.1489 NaN 1 0 Median 449500000 196270000 253230000 310470000 126670000 183800000 33243000 13837000 19406000 87823000 46619000 41204000 1996600 933270 1063300 15034000 7805600 7228900 930830 401140 529690 1831 44 1908 9497;9498;9499;9500;9501;9502;9503;9504;9505;9506;9507;9508;9509;9510;9511;9512;9513;9514;9515;9516;9517;9518;9519;9520;9521 9785;9786;9787;9788;9789;9790;9791;9792;9793;9794;9795;9796;9797;9798;9799;9800;9801;9802;9803;9804;9805;9806;9807;9808;9809;9810;9811;9812;9813 9802 28 ALEHSALAINHK GKYTKFSDSYASVIKALEHSALAINHKLEI VIKALEHSALAINHKLEIKYIDSADLEPIT K A L H K L 3 0 1 0 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1302.7044 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3;Q9NRF8 P17812 320 331 CTPS1;CTPS2 CTP synthase 1;CTP synthase;CTP synthase 2 no no 2;3 1.143E-06 159.83 By MS/MS By MS/MS By MS/MS 3 2 1 1.1187 1.0362 12.837 6 Median 0.91043 0.92144 18.554 3 0 Median 1.2349 1.0362 5.5539 2 0 Median 1.0468 1.1138 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54228000 25429000 28800000 14972000 6832500 8139000 35919000 16791000 19128000 3337600 1805000 1532600 0 0 0 0 0 0 0 0 0 1832 2046;4080 1909 9522;9523;9524;9525;9526;9527 9814;9815;9816;9817;9818;9819;9820 9814 7 ALEHSALAINHKLEIK GKYTKFSDSYASVIKALEHSALAINHKLEI LEHSALAINHKLEIKYIDSADLEPITSQEE K A L I K Y 3 0 1 0 0 0 2 0 2 2 3 2 0 0 0 1 0 0 0 0 0 0 16 1 1786.0101 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 P17812 320 335 CTPS1 CTP synthase 1;CTP synthase yes no 3;4 1.8798E-07 95.067 By MS/MS 2 1.2609 1.177 2.8808 2 Median 1.2609 1.177 2.8808 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47653000 20838000 26815000 47653000 20838000 26815000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1833 2046 1910 9528;9529 9821;9822;9823;9824 9823 4 ALEHVPNSVR ELETDIRAKKRVLRKALEHVPNSVRLWKAA RVLRKALEHVPNSVRLWKAAVELEEPEDAR K A L V R L 1 1 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1120.5989 O94906 O94906 396 405 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0066695 48.794 By MS/MS 1 1.1142 0.94919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1142 0.94919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1677300 790710 886590 0 0 0 0 0 0 0 0 0 1677300 790710 886590 0 0 0 0 0 0 1834 1735 1911 9530 9825;9826 9826 2 ALEIIPR TIPGKQQLLIGAYAKALEIIPRQLCDNAGF LLIGAYAKALEIIPRQLCDNAGFDATNILN K A L P R Q 1 1 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 7 0 810.49634 Q99832 Q99832 441 447 CCT7 T-complex protein 1 subunit eta yes yes 2 0.005702 95.957 By MS/MS By MS/MS By MS/MS 1 2 2 1.0914 0.96159 13.563 5 Median 1.0914 1.0219 NaN 1 0 Median 1.0718 0.91336 7.2775 2 0 Median NaN NaN NaN 0 0 Median 1.1375 0.9679 24.365 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113600000 56597000 57004000 73443000 37786000 35656000 38162000 17877000 20284000 0 0 0 1997500 933760 1063700 0 0 0 0 0 0 1835 3771 1912 9531;9532;9533;9534;9535 9827;9828;9829;9830;9831;9832;9833;9834 9828 8 ALEIYQTK QNQGKYEEVEYYYQRALEIYQTKLGPDDPN VEYYYQRALEIYQTKLGPDDPNVAKTKNNL R A L T K L 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 8 0 964.52295 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 363 370 KLC1 Kinesin light chain 1 yes no 2 0.005111 77.674 By matching By MS/MS 1 1 0.90719 0.82259 10.232 2 Median 0.79636 0.76518 NaN 1 0 Median 1.0334 0.88431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7513700 3740000 3773800 3710400 1921000 1789400 3803300 1819000 1984300 0 0 0 0 0 0 0 0 0 0 0 0 1836 896 1913 9536;9537 9835;9836 9835 2 ALEKEEEEEK MDKEDALICFEEHIRALEKEEEEEKQKSLL EEHIRALEKEEEEEKQKSLLRERRRQRKNR R A L E K Q 1 0 0 0 0 0 6 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1232.5772 O75400;A0A3F2YNY6 O75400 587 596 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 0.01418 29.767 By matching By MS/MS By matching 2 2 1 0.94849 1.0036 6.8521 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91676 1.0417 5.2764 2 0 Median 1.1035 1.0645 8.5168 2 0 Median 0.85053 0.95119 NaN 1 0 Median NaN NaN NaN 0 0 Median 1540500 788940 751580 0 0 0 0 0 0 686080 363140 322940 675530 317690 357830 178900 108100 70800 0 0 0 1837 1670 1914 9538;9539;9540;9541;9542 9837 9837 1 ALEKEEEEEKQK MDKEDALICFEEHIRALEKEEEEEKQKSLL HIRALEKEEEEEKQKSLLRERRRQRKNRES R A L Q K S 1 0 0 0 0 1 6 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 12 2 1488.7308 O75400;A0A3F2YNY6 O75400 587 598 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 0.062725 14.561 By MS/MS By MS/MS By matching 1 2 2 1.106 1.2017 11.437 5 Median NaN NaN NaN 0 0 Median 1.0692 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1207 1.1681 10.38 2 0 Median NaN NaN NaN 0 0 Median 1.2356 1.2746 8.3372 2 0 Median 4446600 2153200 2293400 0 0 0 1842300 915370 926890 0 0 0 2356900 1122700 1234200 0 0 0 247410 115080 132340 1838 1670 1915 9543;9544;9545;9546;9547 9838;9839 9839 2 ALELDGQSVK LKMQQHEQALADCRRALELDGQSVKAHFFL ADCRRALELDGQSVKAHFFLGQCQLEMESY R A L V K A 1 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1058.5608 Q9UNE7;H3BS86 Q9UNE7 86 95 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.00033827 109.71 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.1085 1.0206 26.034 5 Median 1.1085 1.0206 NaN 1 0 Median 1.0618 0.89289 NaN 1 0 Median 1.1056 1.0607 NaN 1 0 Median 1.1247 0.94582 NaN 1 0 Median 1.7407 1.7165 NaN 1 0 Median NaN NaN NaN 0 0 Median 33345000 15017000 18328000 12561000 5534900 7025800 9191800 4211000 4980800 5709700 2542400 3167300 4852100 2320900 2531300 1031100 407860 623220 0 0 0 1839 4342 1916 9548;9549;9550;9551;9552 9840;9841;9842;9843;9844;9845 9841 6 ALELDHK LSLGNAMAACRSFQRALELDHKNAQAQQEF AACRSFQRALELDHKNAQAQQEFKNANAVM R A L H K N 1 0 0 1 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 824.43922 Q99615;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7EK03;K7ER44;K7ELJ8;K7EJE9 Q99615 122 128 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.028199 50.966 By matching By MS/MS By matching 1 1 2 1.2088 1.184 15.022 4 Median 1.3667 1.3254 NaN 1 0 Median 1.1204 0.96802 NaN 1 0 Median 1.1469 1.184 12.795 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3037300 1299200 1738100 785910 328220 457690 1969400 837450 1131900 282050 133550 148510 0 0 0 0 0 0 0 0 0 1840 3759 1917 9553;9554;9555;9556 9846;9847 9846 2 ALELDPDNETYK SSLNKHVEAVAYYKKALELDPDNETYKSNL YKKALELDPDNETYKSNLKIAELKLREAPS K A L Y K S 1 0 1 2 0 0 2 0 0 0 2 1 0 0 1 0 1 0 1 0 0 0 12 0 1406.6565 O43765 O43765 185 196 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 2 0.00034761 81.338 By MS/MS By MS/MS By matching 2 1 1 0.94743 0.85092 37.556 4 Median 0.8322 0.78639 26.198 2 0 Median 0.91055 0.76503 NaN 1 0 Median 1.1672 1.5489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21069000 11272000 9796200 10755000 6338300 4416900 6961800 3517400 3444400 3351600 1416700 1935000 0 0 0 0 0 0 0 0 0 1841 1588 1918 9557;9558;9559;9560 9848;9849;9850;9851 9849 4 ALELDPNLYR KGFMDGKQACERMIRALELDPNLYRIGQSK ERMIRALELDPNLYRIGQSKIFFRAGVLAH R A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 0 0 0 10 0 1202.6295 P35580 P35580 753 762 MYH10 Myosin-10 no no 2 6.8568E-05 133.55 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1 1.0493 0.92745 26.81 6 Median 0.91935 0.86263 NaN 1 1 Median 1.2482 1.0636 NaN 1 0 Median 0.53758 0.58591 NaN 1 0 Median 1.2211 1.0686 NaN 1 0 Median 0.61257 0.62659 NaN 1 0 Median 1.1976 0.99714 NaN 1 0 Median 75867000 41669000 34198000 29882000 14995000 14887000 10351000 4578300 5772200 16099000 10530000 5568500 403910 194110 209810 17153000 10521000 6632100 1978200 849950 1128300 1842 2245 1919 9561;9562;9563;9564;9565;9566;9567 9852;9853;9854;9855;9856;9857;9858;9859;9860;9861 9854 10 ALELDQER QTIKAQKELEEQTRKALELDQERKRAKEEA LEEQTRKALELDQERKRAKEEAERLEKERR K A L E R K 1 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 372 379 RDX Radixin yes no 2 0.0030883 101.64 By MS/MS By MS/MS 1 1 1.2746 1.1928 25.084 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4014 1.4243 NaN 1 0 Median 1.1592 0.99891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15970000 6457200 9512800 0 0 0 0 0 0 13625000 5433800 8191500 2344800 1023400 1321300 0 0 0 0 0 0 1843 2235 1920 9568;9569 9862;9863;9864;9865 9862 4 ALELDSNLYR KGFMDGKQACVLMIKALELDSNLYRIGQSK VLMIKALELDSNLYRIGQSKVFFRAGVLAH K A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 P35579 P35579 746 755 MYH9 Myosin-9 yes yes 2 3.7893E-05 140.5 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 3 1 2 1 1 1.0913 0.93115 24.177 7 Median 1.1524 1.0807 NaN 1 0 Median 1.1076 0.93115 31.054 3 0 Plateau 0.67519 0.72831 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0475 1.0664 NaN 1 0 Median 1.0913 0.9048 NaN 1 1 Median 368640000 168800000 199840000 133190000 58939000 74248000 196650000 90755000 105900000 4265000 2026900 2238100 2215000 2215000 0 27202000 12561000 14641000 5113700 2305900 2807900 1844 2244 1921 9570;9571;9572;9573;9574;9575;9576;9577;9578 9866;9867;9868;9869;9870;9871;9872;9873;9874;9875;9876;9877;9878;9879 9870 14 ALELDSNNEK LKLQAFSAAIESCNKALELDSNNEKGLFRR ESCNKALELDSNNEKGLFRRGEAHLAVNDF K A L E K G 1 0 2 1 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1131.5408 Q02790 Q02790 345 354 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 1.0234E-05 152.47 By MS/MS By MS/MS By MS/MS 2 1 1 1.2074 1.0875 8.9845 4 Linear 1.1698 1.1035 6.0231 2 0 Median 1.11 0.93963 NaN 1 0 Median 1.0857 1.1184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45202000 20907000 24295000 25403000 11393000 14010000 17790000 8608300 9181900 2008900 905940 1102900 0 0 0 0 0 0 0 0 0 1845 2701 1922 9579;9580;9581;9582 9880;9881;9882;9883;9884;9885 9882 6 ALELENDR RELNDRLAHYIDRVRALELENDRLLLKISE HYIDRVRALELENDRLLLKISEKEEVTTRE R A L D R L 1 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 958.47197 Q03252 Q03252 66 73 LMNB2 Lamin-B2 yes yes 2 0.0028204 129.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.2778 1.0791 16.088 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0645 1.0791 NaN 1 0 Median 1.2778 1.0673 NaN 1 0 Median 0.88834 0.9068 11.762 2 0 Median 1.4585 1.2553 6.5002 3 1 Median 37453000 17590000 19863000 0 0 0 0 0 0 17924000 7974300 9949300 1353500 546220 807320 13332000 6924500 6407200 4844100 2145200 2698900 1846 2709 1923 9583;9584;9585;9586;9587;9588;9589 9886;9887;9888;9889;9890;9891;9892 9889 7 ALELENDRLLLK RELNDRLAHYIDRVRALELENDRLLLKISE RVRALELENDRLLLKISEKEEVTTREVSGI R A L L K I 1 1 1 1 0 0 2 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 12 1 1425.8191 Q03252 Q03252 66 77 LMNB2 Lamin-B2 yes yes 2;3 2.4856E-05 121.6 By MS/MS By MS/MS By matching 3 9 4 0.94715 1.0119 16.301 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0378 1.1016 8.8954 3 0 Median NaN NaN NaN 0 0 Median 0.88698 0.9614 8.0786 9 0 Median 1.3113 1.1643 26.723 4 0 Median 126220000 60629000 65592000 0 0 0 0 0 0 15668000 7298100 8370100 0 0 0 105270000 50983000 54282000 5287600 2348300 2939400 1847 2709 1924 9590;9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605 9893;9894;9895;9896;9897;9898;9899;9900;9901;9902 9898 10 ALELEQER QTKKAQQELEEQTRRALELEQERKRAQSEA LEEQTRRALELEQERKRAQSEAEKLAKERQ R A L E R K 1 1 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 986.50327 P26038 P26038 372 379 MSN Moesin yes yes 2 0.0010591 148.33 By MS/MS By MS/MS By MS/MS 1 1 1 1.1043 1.0538 12.175 3 Median NaN NaN NaN 0 0 Median 1.0138 0.87468 NaN 1 0 Median 1.1043 1.0997 NaN 1 0 Median 1.256 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 182130000 82285000 99842000 0 0 0 56756000 26884000 29872000 118080000 52053000 66025000 7293000 3348300 3944700 0 0 0 0 0 0 1848 2139 1925 9606;9607;9608 9903;9904;9905;9906 9904 4 ALELEQERK QTKKAQQELEEQTRRALELEQERKRAQSEA EEQTRRALELEQERKRAQSEAEKLAKERQE R A L R K R 1 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1114.5982 P26038 P26038 372 380 MSN Moesin yes yes 2 0.023427 42.599 By matching By MS/MS By MS/MS 1 2 1 1.5809 2.4218 32.935 4 Linear 1.2938 1.3143 NaN 1 0 Median 2.2339 1.9809 45.584 2 0 Median 1.4928 1.587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6070900 1971300 4099500 631260 285190 346070 3577900 1013100 2564800 1861700 673030 1188700 0 0 0 0 0 0 0 0 0 1849 2139 1926 9609;9610;9611;9612 9907;9908 9907 2 ALELMGQLQDQQALR PADRLIDTCRECGARALELMGQLQDQQALR ALELMGQLQDQQALRHMQASLVRTPLQGIL R A L L R H 2 1 0 1 0 4 1 1 0 0 4 0 1 0 0 0 0 0 0 0 0 0 15 0 1712.888 O75146 O75146 732 746 HIP1R Huntingtin-interacting protein 1-related protein yes yes 2 7.7619E-07 83.397 By MS/MS 1 1.258 1.3779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.258 1.3779 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2387200 1062200 1325000 0 0 0 0 0 0 2387200 1062200 1325000 0 0 0 0 0 0 0 0 0 1850 1647 1927 9613 9909 9909 1 ALELNMLSLK NAKGDDALEKRFLDKALELNMLSLKGHRSV RFLDKALELNMLSLKGHRSVGGIRASLYNA K A L L K G 1 0 1 0 0 0 1 0 0 0 4 1 1 0 0 1 0 0 0 0 0 0 10 0 1130.6369 Q9Y617 Q9Y617 324 333 PSAT1 Phosphoserine aminotransferase yes yes 2 0.0039357 54.982 By MS/MS By MS/MS 1 1 1.748 1.5541 44.839 2 Median 1.2189 1.1319 NaN 1 0 Median 2.5067 2.134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66926000 26118000 40807000 10778000 4887700 5890700 56147000 21231000 34916000 0 0 0 0 0 0 0 0 0 0 0 0 1851 4476 1928 9614;9615 9910;9911;9912 9911 3 ALELSGTAVPPDLEK FITEDQARYAGDIIKALELSGTAVPPDLEK ALELSGTAVPPDLEKLWSDFKDQQKAEGKI K A L E K L 2 0 0 1 0 0 2 1 0 0 3 1 0 0 2 1 1 0 0 1 0 0 15 0 1538.8192 Q7L014;A0A0C4DG89 Q7L014 737 751 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 3.3831E-09 98.353 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 1 1 1 0.93089 0.81564 66.151 8 Median 0.77107 0.74928 NaN 1 0 Median 0.9603 0.856 6.0831 2 0 Median 0.82332 0.88885 12.901 2 0 Median 0.92997 0.80869 NaN 1 0 Median 4.7135 5.3193 NaN 1 0 Median 0.93194 0.77895 NaN 1 0 Median 47455000 23002000 24453000 6958900 3099200 3859800 2016000 840270 1175700 35298000 18132000 17166000 606760 300050 306710 2175500 407290 1768200 400060 222560 177500 1852 3216 1929 9616;9617;9618;9619;9620;9621;9622;9623 9913;9914;9915;9916;9917 9915 5 ALELTGLK KFGYVDFESAEDLEKALELTGLKVFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD K A L L K V 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 843.50657 P19338 P19338 363 370 NCL Nucleolin yes yes 1;2 0.0029873 102.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 9 5 9 6 7 1.2403 1.112 9.1736 43 Median 1.2086 1.1165 8.2232 7 1 Median 1.2758 1.1082 4.6077 9 0 Median 1.1359 1.1995 5.4852 5 0 Median 1.2837 1.1049 12.803 9 0 Median 1.2221 1.202 7.8682 6 0 Median 1.2509 1.0476 5.0209 7 0 Median 363620000 162450000 201170000 98885000 46000000 52885000 63346000 27623000 35723000 66929000 29282000 37647000 21559000 9311200 12248000 82087000 37153000 44933000 30819000 13081000 17738000 1853 2063 1930 9624;9625;9626;9627;9628;9629;9630;9631;9632;9633;9634;9635;9636;9637;9638;9639;9640;9641;9642;9643;9644;9645;9646;9647;9648;9649;9650;9651;9652;9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666 9918;9919;9920;9921;9922;9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934;9935;9936;9937;9938;9939;9940;9941;9942;9943;9944;9945;9946;9947;9948;9949;9950;9951;9952;9953;9954 9918 36 ALEMVPLLTSTK SMDSAKRRHPKLLAKALEMVPLLTSTKDLV LAKALEMVPLLTSTKDLVISLSGILHKLDP K A L T K D 1 0 0 0 0 0 1 0 0 0 3 1 1 0 1 1 2 0 0 1 0 0 12 0 1301.7265 P50748;J3KQF2 P50748 1498 1509 KNTC1 Kinetochore-associated protein 1 yes no 2 0.013998 56.563 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1854 2420 1931 9667 9955 9955 1 ALENDPDCR YSEEEKYAFVNWINKALENDPDCRHVIPMN VNWINKALENDPDCRHVIPMNPNTDDLFKA K A L C R H 1 1 1 2 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 9 0 1088.4557 P13797;A0A0A0MSQ0;U3KQI3;P13796;Q5TBN3 P13797 136 144 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 0.00064128 107.66 By matching By MS/MS 1 2 0.93514 0.80824 19.921 3 Plateau 0.88628 0.88195 NaN 1 0 Median 0.79711 0.69809 20.719 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22329000 11049000 11280000 2908700 1537100 1371600 19420000 9512000 9908500 0 0 0 0 0 0 0 0 0 0 0 0 1855 1995 1932 9668;9669;9670 9956;9957 9956 2 ALENVLSGK TNVPLNNFSADQVTRALENVLSGKA_____ ADQVTRALENVLSGKA______________ R A L G K A 1 0 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 929.5182 O43678 O43678 90 98 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 2 0.0023621 83.265 By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1.0816 0.95737 16.836 5 Median NaN NaN NaN 0 0 Median 1.3904 1.1496 1.8075 2 0 Median 0.85746 0.86397 14.516 2 0 Median 1.0816 0.88935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12339000 5626000 6712800 0 0 0 8877600 3758400 5119200 2893800 1612800 1281000 567430 254790 312640 0 0 0 0 0 0 1856 1584 1933 9671;9672;9673;9674;9675;9676 9958;9959;9960;9961;9962;9963 9958 6 ALENVLSGKA TNVPLNNFSADQVTRALENVLSGKA_____ DQVTRALENVLSGKA_______________ R A L K A - 2 0 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1000.5553 O43678 O43678 90 99 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 2 0.00082207 100.25 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.0515 1.023 48.098 7 Plateau 0.92832 0.83647 NaN 1 0 Median 0.70368 0.59918 104.12 2 0 Median 0.79941 0.77522 4.7803 2 2 Median 1.4202 1.1516 NaN 1 0 Median 0.66579 0.70371 NaN 1 0 Median NaN NaN NaN 0 0 Median 121360000 54043000 67318000 54007000 26296000 27710000 54988000 21610000 33378000 9092800 4665300 4427500 2373200 921880 1451300 899730 548770 350960 0 0 0 1857 1584 1934 9677;9678;9679;9680;9681;9682;9683 9964;9965;9966;9967;9968;9969 9967 6 ALEPLEGLETMR MNISSQGDGACVLLRALEPLEGLETMRQLR LLRALEPLEGLETMRQLRSTLRKGTASRVL R A L M R Q 1 1 0 0 0 0 3 1 0 0 3 0 1 0 1 0 1 0 0 0 0 0 12 0 1357.6912 P29372;A2IDA3 P29372 183 194 MPG DNA-3-methyladenine glycosylase yes no 2 3.6978E-06 140.16 By MS/MS By MS/MS By matching 3 4 1 1.0138 0.86909 40.178 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87414 0.85112 57.096 3 1 Median 1.2334 1.0258 37.251 4 0 Median NaN NaN NaN 0 0 Median 0.99581 0.85862 NaN 1 0 Median 30487000 16903000 13585000 0 0 0 0 0 0 26044000 14591000 11454000 3634800 1777100 1857700 0 0 0 808100 534850 273250 1858 2170 1935;1936 9684;9685;9686;9687;9688;9689;9690;9691 9970;9971;9972;9973;9974 9970 919 5 ALEPTGQSGEAVK LHPRVAPSKLEALQKALEPTGQSGEAVKEL QKALEPTGQSGEAVKELYSQLGEKLEQLDH K A L V K E 2 0 0 0 0 1 2 2 0 0 1 1 0 0 1 1 1 0 0 1 0 0 13 0 1285.6514 Q8WX92 Q8WX92 526 538 NELFB Negative elongation factor B yes yes 2 0.00041999 73.885 By MS/MS By MS/MS By MS/MS 1 1 1 1.0152 0.92069 20.918 3 Plateau 0.64292 0.62258 NaN 1 0 Median 1.1135 0.94469 NaN 1 0 Median 0.70045 0.7448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9225200 4655700 4569500 1269200 785130 484110 5082100 2218700 2863400 2873900 1651900 1222000 0 0 0 0 0 0 0 0 0 1859 3514 1937 9692;9693;9694 9975;9976;9977;9978;9979;9980 9980 6 ALEQFATVVEAK LVHPELSRSGELAVRALEQFATVVEAKLIK AVRALEQFATVVEAKLIKHKKGIVNEQFLL R A L A K L 3 0 0 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1304.6976 P49748;G3V1M7;J3QRJ8;K7EMF8 P49748 539 550 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.00067049 62.303 By MS/MS By matching By matching By matching 1 1 1 1 0.98774 0.89875 12.436 4 Median 0.84044 0.7855 NaN 1 0 Median 1.1777 0.9869 NaN 1 0 Median 0.77055 0.81847 NaN 1 0 Median 1.1609 0.99802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35156000 17685000 17471000 19349000 10104000 9245200 10537000 4543300 5993600 4496600 2656000 1840600 773230 381750 391480 0 0 0 0 0 0 1860 2394 1938 9695;9696;9697;9698 9981;9982 9982 2 ALEQIDENLIYWPR RRLWERVRLSKNYEKALEQIDENLIYWPRF KALEQIDENLIYWPRFIRHKCKQRFTKITQ K A L P R F 1 1 1 1 0 1 2 0 0 2 2 0 0 0 1 0 0 1 1 0 0 0 14 0 1758.8941 Q9BXY0;H0YBV6 Q9BXY0 90 103 MAK16 Protein MAK16 homolog yes no 2 0.018736 28.204 By MS/MS By matching 1 1 1.44 1.3921 23.658 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5339 1.6456 NaN 1 0 Median 1.3519 1.1777 NaN 1 0 Median 2347300 991620 1355700 0 0 0 0 0 0 0 0 0 0 0 0 1758500 775080 983420 588790 216540 372250 1861 3883 1939 9699;9700 9983 9983 1 ALEQLNGFELAGR GYGFITFSDSECAKKALEQLNGFELAGRPM KKALEQLNGFELAGRPMKVGHVTERTDASS K A L G R P 2 1 1 0 0 1 2 2 0 0 3 0 0 1 0 0 0 0 0 0 0 0 13 0 1416.7361 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;A0A0U1RQW2;G3V5Z6;H0YJJ3;G3XAP0;Q86U06 Q14498 307 319 RBM39;RBM23 RNA-binding protein 39;Probable RNA-binding protein 23 yes no 2 0.00022946 91.855 By MS/MS 1 1.1122 1.1305 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1122 1.1305 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13394000 5699600 7694300 0 0 0 0 0 0 13394000 5699600 7694300 0 0 0 0 0 0 0 0 0 1862 2879 1940 9701 9984 9984 1 ALEQQVEEMK DDVGKSVHELEKSKRALEQQVEEMKTQLEE EKSKRALEQQVEEMKTQLEELEDELQATED R A L M K T 1 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1203.5805 P35579 P35579 1529 1538 MYH9 Myosin-9 yes yes 2 1.8918E-15 185.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 0.96343 0.96727 37.948 9 Median 1.2139 1.1643 NaN 1 0 Median 0.64592 0.56342 37.502 3 2 Median 0.88756 0.97972 NaN 1 0 Median 0.9199 1.271 38.62 2 0 Median NaN NaN NaN 0 0 Median 1.0544 0.88702 15.375 2 1 Median 231490000 113830000 117650000 31176000 14085000 17091000 181530000 90401000 91126000 10888000 5650200 5237800 4360100 2152200 2207900 0 0 0 3536400 1545300 1991100 1863 2244 1941;1942 9702;9703;9704;9705;9706;9707;9708;9709;9710 9985;9986;9987;9988;9989;9990;9991;9992;9993;9994;9995;9996 9989 983 12 ALEQQVEEMR DDVGKNVHELEKSKRALEQQVEEMRTQLEE EKSKRALEQQVEEMRTQLEELEDELQATED R A L M R T 1 1 0 0 0 2 3 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1231.5867 P35580 P35580 1536 1545 MYH10 Myosin-10 yes yes 2 2.8657E-11 180.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1.1167 1.0009 17.508 8 Median 1.0512 1.0217 1.438 2 0 Median 1.2302 1.0462 8.2331 2 0 Median 0.62748 0.68398 NaN 1 0 Median 1.2374 1.0866 NaN 1 1 Median 0.74217 0.75823 NaN 1 0 Median 1.189 0.99056 NaN 1 0 Median 149420000 75486000 73934000 57289000 27215000 30074000 37168000 15741000 21427000 31624000 19538000 12087000 2274400 1055100 1219300 19322000 11173000 8149400 1741800 764760 977060 1864 2245 1943;1944 9711;9712;9713;9714;9715;9716;9717;9718 9997;9998;9999;10000;10001;10002;10003;10004;10005;10006;10007 10000 1001 11 ALERDPTEDDVESK ______________________________ RALERDPTEDDVESKKIKMERGLLASDLNT R A L S K K 1 1 0 3 0 0 3 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 14 1 1602.7373 Q86YP4;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5 Q86YP4 14 27 GATAD2A Transcriptional repressor p66-alpha yes no 3 0.001621 37.613 By MS/MS 1 0.78703 0.83553 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78703 0.83553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430400 1893800 1536600 0 0 0 0 0 0 3430400 1893800 1536600 0 0 0 0 0 0 0 0 0 1865 3309 1945 9719 10008;10009 10009 2 ALERDPTEDDVESKK ______________________________ ALERDPTEDDVESKKIKMERGLLASDLNTD R A L K K I 1 1 0 3 0 0 3 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 15 2 1730.8323 Q86YP4;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5 Q86YP4 14 28 GATAD2A Transcriptional repressor p66-alpha yes no 4 0.070709 17.867 By MS/MS 1 1.2548 1.4311 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2548 1.4311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2793600 1180800 1612800 0 0 0 0 0 0 2793600 1180800 1612800 0 0 0 0 0 0 0 0 0 1866 3309 1946 9720 10010 10010 1 ALESDMAPVLIMATNR EVHMLDIESFSFLNRALESDMAPVLIMATN LESDMAPVLIMATNRGITRIRGTSYQSPHG R A L N R G 3 1 1 1 0 0 1 0 0 1 2 0 2 0 1 1 1 0 0 1 0 0 16 0 1730.8695 Q9Y230;M0R0Y3 Q9Y230 315 330 RUVBL2 RuvB-like 2 yes no 2;3 6.6107E-07 96.103 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 5 3 2 1 0.95951 0.90462 11.991 15 Median 0.95926 0.92718 7.1618 2 0 Median 1.0292 0.87353 6.8001 2 0 Median 0.90323 0.90462 9.0531 5 0 Median 1.0718 0.99862 27.17 3 0 Median 0.90621 0.91197 7.8945 2 2 Median 0.96514 0.87248 NaN 1 0 Median 79346000 39627000 39719000 25592000 12848000 12744000 10075000 4966400 5108800 37619000 18999000 18620000 2250200 1022300 1228000 3695100 1749300 1945800 114870 42513 72354 1867 4368 1947;1948;1949 9721;9722;9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735 10011;10012;10013;10014;10015;10016;10017;10018;10019;10020;10021;10022;10023;10024;10025 10024 1948;1949 15 ALESGDVNTVWK SVAVEMLSSVALINRALESGDVNTVWKQLS INRALESGDVNTVWKQLSSSVTGLTNIEEE R A L W K Q 1 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 1 1 0 2 0 0 12 0 1317.6565 P46940;A0A0J9YXZ5 P46940 466 477 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.1455E-06 119.68 By MS/MS By MS/MS By MS/MS 4 2 2 0.91985 0.78688 26.178 7 Median 1.1325 1.0818 24.28 3 1 Median 1.0222 0.88961 17.353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73889 0.63199 4.801 2 0 Median 90468000 42245000 48223000 63166000 29037000 34129000 26001000 12571000 13431000 0 0 0 0 0 0 0 0 0 1300400 636860 663540 1868 2350 1950 9736;9737;9738;9739;9740;9741;9742;9743 10026;10027;10028;10029;10030;10031;10032 10028 7 ALESPERPFLAILGGAK AGGFLMKKELNYFAKALESPERPFLAILGG ESPERPFLAILGGAKVADKIQLINNMLDKV K A L A K V 3 1 0 0 0 0 2 2 0 1 3 1 0 1 2 1 0 0 0 0 0 0 17 1 1767.9883 P00558 P00558 200 216 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 5.3171E-14 164.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 5 4 2 1 1 0.80422 0.81164 21.908 22 Median 0.79936 0.7937 20.229 9 0 Median 0.99852 0.923 19.956 5 0 Median 0.8163 0.87902 16.785 4 0 Median 0.92832 0.85418 24.993 2 0 Median 0.78005 0.80929 NaN 1 0 Median 0.554 0.50786 NaN 1 0 Median 381430000 202280000 179150000 215760000 115620000 100140000 76879000 38819000 38059000 81654000 44308000 37346000 5231300 2492100 2739200 1518800 808780 710030 390980 227630 163340 1869 1824 1951 9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763;9764;9765 10033;10034;10035;10036;10037;10038;10039;10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059;10060;10061;10062;10063;10064 10045 32 ALESSFAQNPLPLDEELDRLR FTPTKYKERAPEQLRALESSFAQNPLPLDE AQNPLPLDEELDRLRSETKMTRREIDSWFS R A L L R S 2 2 1 2 0 1 3 0 0 0 5 0 0 1 2 2 0 0 0 0 0 0 21 1 2412.2285 H0Y6F5;Q9H4I2 H0Y6F5 335 355 ZHX3 Zinc fingers and homeoboxes protein 3 yes no 3 0.067135 7.9922 By matching By MS/MS 1 1 0.81929 0.8343 10.401 2 Median NaN NaN NaN 0 0 Median 1.0532 0.89798 NaN 1 0 Median 0.63735 0.77515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3488800 2026100 1462700 0 0 0 1077900 546160 531770 2410800 1480000 930890 0 0 0 0 0 0 0 0 0 1870 1154 1952 9766;9767 10065 10065 1 ALESSIAPIVIFASNR EVHMLDIECFTYLHRALESSIAPIVIFASN LESSIAPIVIFASNRGNCVIRGTEDITSPH R A L N R G 3 1 1 0 0 0 1 0 0 3 1 0 0 1 1 3 0 0 0 1 0 0 16 0 1686.9305 Q9Y265;E7ETR0;H7C4G5;H7C4I3;J3QLR1 Q9Y265 318 333 RUVBL1 RuvB-like 1 yes no 2;3 4.6751E-10 119.69 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 4 2 5 1 0.95367 0.92201 11.934 17 Median 0.95003 0.90271 8.5343 3 0 Median 1.0627 0.91154 4.3825 2 0 Median 0.89886 0.89787 5.9844 4 0 Median 1.0151 0.89389 18.616 2 0 Median 0.95367 0.96102 6.9938 5 0 Median 1.6464 1.3539 NaN 1 0 Median 70177000 34946000 35231000 17970000 8887700 9082000 8105000 3782500 4322600 35704000 18067000 17638000 231870 104550 127330 7885500 3967200 3918300 280980 137480 143500 1871 4375 1953 9768;9769;9770;9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782;9783;9784 10066;10067;10068;10069;10070;10071;10072;10073;10074;10075;10076;10077;10078;10079;10080;10081;10082;10083 10077 18 ALESSLWELQALQR ADPYDPGEEDPAQSRALESSLWELQALQRH RALESSLWELQALQRHYHPEVSKAASVINQ R A L Q R H 2 1 0 0 0 2 2 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 14 0 1642.8679 Q9BVI4 Q9BVI4 430 443 NOC4L Nucleolar complex protein 4 homolog yes yes 2 6.525E-08 101.95 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 3 1.4553 1.3123 44.655 8 Median NaN NaN NaN 0 0 Median 1.2695 1.1035 NaN 1 0 Median 1.0354 1.0777 NaN 1 0 Median 1.4268 1.2206 NaN 1 0 Median 2.2676 2.2979 57.52 2 1 Median 1.8041 1.4109 46.595 3 1 Median 45349000 12794000 32555000 0 0 0 1468900 649460 819490 3703500 1928500 1775000 14825000 6154300 8670800 15900000 1686800 14213000 9451900 2375100 7076700 1872 3854 1954 9785;9786;9787;9788;9789;9790;9791;9792 10084;10085;10086;10087;10088 10087 5 ALETDSVSGVSK NGTANGFSEINSKEKALETDSVSGVSKQSK KEKALETDSVSGVSKQSKKQKL________ K A L S K Q 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 3 1 0 0 2 0 0 12 0 1191.5983 J3QQW9;Q15022 J3QQW9 698 709 SUZ12 Polycomb protein SUZ12 yes no 2 0.020333 52.278 By MS/MS By MS/MS 1 1 0.78541 0.80881 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78541 0.80881 NaN 1 1 Median NaN NaN NaN 0 0 Median 1865900 844090 1021800 0 0 0 0 0 0 0 0 0 0 0 0 1865900 844090 1021800 0 0 0 1873 1344 1955 9793;9794 10089;10090 10090 2 ALETHIMGIK A L I K 1 0 0 0 0 0 1 1 1 2 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1111.606 REV__Q8ND07 yes yes 2 0.017808 54.549 By MS/MS 1 0.12849 0.13092 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12849 0.13092 NaN 1 1 Median NaN NaN NaN 0 0 Median 6391600 5746000 645580 0 0 0 0 0 0 0 0 0 0 0 0 6391600 5746000 645580 0 0 0 + 1874 4551 1956 9795 10091 10091 2011 1 ALETLTGALFQRPPLIAAVK VRLHNAIEGGTQLSRALETLTGALFQRPPL TGALFQRPPLIAAVKRQLRVRTIYESKMIE R A L V K R 4 1 0 0 0 1 1 1 0 1 4 1 0 1 2 0 2 0 0 1 0 0 20 1 2108.2358 O60832;C9IYT0;H7C0M1;H7BZF2 O60832 172 191 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 4.2307E-19 156.69 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 5 0.86051 0.8481 14.825 15 Median NaN NaN NaN 0 0 Median 1.0357 0.94439 1.9979 3 0 Plateau 0.68283 0.82997 9.7758 3 0 Plateau NaN NaN NaN 0 0 Median 0.83525 0.87052 6.4902 4 0 Median 0.92567 0.83308 22.772 5 0 Median 103550000 55294000 48251000 0 0 0 7108600 3387200 3721400 63522000 34370000 29152000 0 0 0 23671000 12635000 11036000 9244300 4902400 4341900 1875 1634 1957 9796;9797;9798;9799;9800;9801;9802;9803;9804;9805;9806;9807;9808;9809;9810 10092;10093;10094;10095;10096;10097;10098;10099;10100 10094 9 ALEVAEYLTPVLK ______________________________ GKALEVAEYLTPVLKESKFKETGVITPEEF K A L L K E 2 0 0 0 0 0 2 0 0 0 3 1 0 0 1 0 1 0 1 2 0 0 13 0 1444.8177 Q9NT62;F8WDI0 Q9NT62 12 24 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 2 3.266E-18 131.82 By MS/MS By MS/MS By matching 2 3 1 0.91082 0.80625 8.4266 5 Median 0.93066 0.89463 4.7825 2 0 Median 0.92656 0.78517 3.7468 2 0 Median NaN NaN NaN 0 0 Median 0.89871 0.7599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27872000 14193000 13679000 6297400 3214200 3083200 21268000 10820000 10448000 0 0 0 306370 158040 148330 0 0 0 0 0 0 1876 4106 1958 9811;9812;9813;9814;9815;9816 10101;10102;10103;10104;10105;10106;10107 10107 7 ALEVFPEFAAAHSNLASVLQQQGK REQGNIEEAVRLYRKALEVFPEFAAAHSNL AAHSNLASVLQQQGKLQEALMHYKEAIRIS K A L G K L 5 0 1 0 0 3 2 1 1 0 3 1 0 2 1 2 0 0 0 2 0 0 24 0 2554.318 O15294 O15294 353 376 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 3 0.028115 12.677 By matching By MS/MS By matching 1 1 1 0.94566 1.0404 14.908 3 Plateau NaN NaN NaN 0 0 Median 1.172 1.0041 NaN 1 0 Median 0.94566 1.0404 NaN 1 0 Median 0.92722 0.79093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5130300 2605700 2524600 0 0 0 1016900 518140 498780 3746200 1902100 1844000 367190 185380 181810 0 0 0 0 0 0 1877 1537 1959 9817;9818;9819 10108;10109 10108 2 ALEVIKPAHILQEK QIRNQLTAMSSVLAKALEVIKPAHILQEKE KALEVIKPAHILQEKEEQHQLAVTAYLKNS K A L E K E 2 0 0 0 0 1 2 0 1 2 2 2 0 0 1 0 0 0 0 1 0 0 14 1 1587.9348 Q14152 Q14152 533 546 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3;4 6.6055E-05 77.776 By MS/MS By MS/MS By matching 3 4 1 0.89246 0.86492 15.489 7 Median 1.0064 1.0108 24.871 2 0 Median 0.95172 0.91803 12.251 4 0 Median NaN NaN NaN 0 0 Median 0.86022 0.80367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36937000 17837000 19099000 23304000 11096000 12209000 12562000 6240700 6321600 0 0 0 1070100 500930 569180 0 0 0 0 0 0 1878 2860 1960 9820;9821;9822;9823;9824;9825;9826;9827 10110;10111;10112;10113;10114;10115;10116 10111 7 ALEVIKPAHILQEKEEQHQLAVTAYLK QIRNQLTAMSSVLAKALEVIKPAHILQEKE EKEEQHQLAVTAYLKNSRKEHQRILARRQT K A L L K N 4 0 0 0 0 3 4 0 2 2 4 3 0 0 1 0 1 0 1 2 0 0 27 2 3098.7128 Q14152 Q14152 533 559 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3;4;5 2.9616E-26 84.404 By MS/MS By matching By matching 3 1 2 0.86883 0.98532 9.5172 6 Median 0.89699 0.98208 10.807 3 0 Median 0.84154 0.96779 NaN 1 0 Median 0.88098 1.0586 9.6837 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53041000 28528000 24513000 47927000 26206000 21722000 1426500 613320 813180 3686900 1709000 1977900 0 0 0 0 0 0 0 0 0 1879 2860 1961 9828;9829;9830;9831;9832;9833 10117;10118;10119;10120 10119 4 ALEVSEDVK VTQNVEVPETPKASKALEVSEDVKVSKASG TPKASKALEVSEDVKVSKASGVSKATEVSK K A L V K V 1 0 0 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 988.50769 Q9UNF1 Q9UNF1 48 56 MAGED2 Melanoma-associated antigen D2 yes yes 2 0.00090662 91.318 By MS/MS By MS/MS By MS/MS 1 1 1 1.4628 1.4099 58.69 3 Median 1.4628 1.4099 NaN 1 0 Median 1.0743 0.90457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.7997 2.8941 NaN 1 0 Median NaN NaN NaN 0 0 Median 15468000 5446800 10021000 3382300 910720 2471600 7354500 3239400 4115000 0 0 0 0 0 0 4731500 1296700 3434800 0 0 0 1880 4343 1962 9834;9835;9836 10121;10122;10123 10121 3 ALEYHKHDLLLAR SQLGNAYFYLKEHGRALEYHKHDLLLARTI GRALEYHKHDLLLARTIGDRMGEAKASGNL R A L A R T 2 1 0 1 0 0 1 0 2 0 4 1 0 0 0 0 0 0 1 0 0 0 13 1 1577.8678 A0A0A0MSK4;A0A0A0MRC4;Q86YR5;A0A087WVF5 A0A0A0MSK4 85 97 GPSM1 G-protein-signaling modulator 1 yes no 3 0.014036 25.647 By MS/MS 1 0.5848 0.59594 NaN 1 Median 0.5848 0.59594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1479500 902570 576950 1479500 902570 576950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1881 157 1963 9837 10124 10124 1 ALEYTIYNQELNETR KEELAQYQKWDKMRRALEYTIYNQELNETR ALEYTIYNQELNETRAKLDELSAKRETSGE R A L T R A 1 1 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 15 0 1855.8952 Q9UQE7 Q9UQE7 222 236 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 3.2972E-40 167.3 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 5 2 1.1862 1.0783 39.635 14 Median 1.3885 1.3424 NaN 1 0 Median 1.4394 1.2716 NaN 1 0 Median 0.91066 1.0007 14.833 3 0 Plateau 1.2502 1.0824 1.2335 2 0 Median 1.1209 1.141 62.301 5 3 Median 1.2868 1.0557 3.6933 2 0 Median 130940000 63030000 67906000 5870300 2433600 3436700 846030 370520 475510 56679000 28982000 27697000 3635900 1565500 2070400 61926000 28767000 33159000 1978000 911240 1066700 1882 4362 1964 9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848;9849;9850;9851 10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136;10137;10138 10135 14 ALEYVEAK KQHGTEKDVQAVKAKALEYVEAKSSVLED_ VQAVKAKALEYVEAKSSVLED_________ K A L A K S 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 921.48075 Q14690;A0A3B3IUD7 Q14690 1858 1865 PDCD11 Protein RRP5 homolog yes no 2 0.0067369 69.998 By MS/MS By MS/MS By matching 1 1 1 1.3444 1.2906 9.0388 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1519 1.2107 NaN 1 0 Median 1.5692 1.3757 NaN 1 0 Median 4515800 2097800 2418100 0 0 0 0 0 0 0 0 0 0 0 0 3723700 1772500 1951200 792160 325320 466840 1883 448 1965 9852;9853;9854 10139;10140;10141 10140 3 ALFAISCLVR LRLLDRDACDTVRVKALFAISCLVREQEAG TVRVKALFAISCLVREQEAGLLQFLRLDGF K A L V R E 2 1 0 0 1 0 0 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1148.6376 Q9NZL4;K7EN20 Q9NZL4 208 217 HSPBP1 Hsp70-binding protein 1 yes no 2 0.038412 49.418 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1884 4190 1966 9855 10142 10142 1 ALFARPDLLLLDEPTNMLDVR REFSGGWRMRLALARALFARPDLLLLDEPT DLLLLDEPTNMLDVRAILWLENYLQTWPST R A L V R A 2 2 1 3 0 0 1 0 0 0 6 0 1 1 2 0 1 0 0 1 0 0 21 1 2411.2883 Q9NUQ8 Q9NUQ8 341 361 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 3 0.069526 7.6218 By MS/MS By matching 1 1 0.88214 0.88847 6.557 2 Median 0.82729 0.84822 NaN 1 0 Median 0.94063 0.93063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1328300 730130 598150 708040 401830 306210 620240 328300 291940 0 0 0 0 0 0 0 0 0 0 0 0 1885 4119 1967 9856;9857 10143 10143 1 ALFAVGVGR QEAFFGKELLDLSRKALFAVGVGRPSFGLG LDLSRKALFAVGVGRPSFGLGTPKAKGDGG K A L G R P 2 1 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 888.51814 O14686;A0A3B3ISC8 O14686 1788 1796 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 0.020926 38.792 By matching By MS/MS 2 1 0.93931 1.0508 4.8883 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92288 1.0265 3.3063 2 0 Median 1.2741 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2923700 1468000 1455600 0 0 0 0 0 0 2531500 1292800 1238600 392200 175200 217000 0 0 0 0 0 0 1886 1490 1968 9858;9859;9860 10144 10144 1 ALFEEVPELLTEAEK VTGTIGEDEDLIKWKALFEEVPELLTEAEK ALFEEVPELLTEAEKKEWVEKLTEVSISSD K A L E K K 2 0 0 0 0 0 5 0 0 0 3 1 0 1 1 0 1 0 0 1 0 0 15 0 1716.8822 P31939;H7C1S2 P31939 510 524 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 2.7542E-09 100.55 By MS/MS 1 0.81655 0.69286 NaN 1 Median NaN NaN NaN 0 0 Median 0.81655 0.69286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5040000 2454000 2586000 0 0 0 5040000 2454000 2586000 0 0 0 0 0 0 0 0 0 0 0 0 1887 2207 1969 9861 10145;10146 10145 2 ALFEEVPELLTEAEKK VTGTIGEDEDLIKWKALFEEVPELLTEAEK LFEEVPELLTEAEKKEWVEKLTEVSISSDA K A L K K E 2 0 0 0 0 0 5 0 0 0 3 2 0 1 1 0 1 0 0 1 0 0 16 1 1844.9771 P31939;H7C1S2 P31939 510 525 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 3.169E-05 53.328 By MS/MS By MS/MS By matching 1 1 1 0.95921 0.89156 17.023 3 Median 0.95921 0.89156 NaN 1 0 Median 0.88835 0.82877 NaN 1 0 Median 1.0895 1.1465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57500000 27460000 30040000 42373000 21720000 20652000 13720000 5171900 8547800 1407800 568220 839580 0 0 0 0 0 0 0 0 0 1888 2207 1970 9862;9863;9864 10147;10148;10149;10150 10147 4 ALFEIALR SDSAYVAQNAARIVRALFEIALRKRWPTMT NAARIVRALFEIALRKRWPTMTYRLLNLSK R A L L R K 2 1 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 Q8N3C0 Q8N3C0 1092 1099 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.012659 54.549 By MS/MS By matching 2 1 1.157 1.1481 0.88163 3 Median 1.1457 1.1522 0.51139 2 0 Median 1.2872 1.1363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3351800 1329900 2021900 2896800 1125500 1771300 454990 204390 250600 0 0 0 0 0 0 0 0 0 0 0 0 1889 3366 1971 9865;9866;9867 10151 10151 1 ALFGLYMSASHIASNPK KYFAQALKLNNRNMRALFGLYMSASHIASN FGLYMSASHIASNPKASAKTKKDNMKYASW R A L P K A 3 0 1 0 0 0 0 1 1 1 2 1 1 1 1 3 0 0 1 0 0 0 17 0 1805.9134 Q15006 Q15006 228 244 EMC2 ER membrane protein complex subunit 2 yes yes 2;3 1.379E-05 79.693 By MS/MS By matching By matching 4 2 1 1.0015 0.93843 16.4 7 Median 1.0015 0.93843 14.151 4 0 Median 1.3163 1.1127 5.402 2 0 Median 0.80775 0.78611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23756000 11353000 12403000 20615000 9790500 10825000 1869500 915200 954290 1271800 647330 624520 0 0 0 0 0 0 0 0 0 1890 2909 1972 9868;9869;9870;9871;9872;9873;9874 10152;10153;10154 10153 3 ALFLETEQLKK VKVFKQPSKPEIVSKALFLETEQLKKLGDC IVSKALFLETEQLKKLGDCISEDSYPDGNI K A L K K L 1 0 0 0 0 1 2 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 11 1 1318.7497 Q13740;F5GXJ9 Q13740 143 153 ALCAM CD166 antigen yes no 2 0.000773 85.731 By MS/MS 1 0.82326 0.86509 NaN 1 Median 0.82326 0.86509 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6458000 3744100 2713900 6458000 3744100 2713900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1891 2836 1973 9875 10155 10155 1 ALFNAQFGSIFR AAWMKERQELRCITKALFNAQFGSIFRTFH ITKALFNAQFGSIFRTFHNPTYFSRRLVRF K A L F R T 2 1 1 0 0 1 0 1 0 1 1 0 0 3 0 1 0 0 0 0 0 0 12 0 1369.7143 Q9H857 Q9H857 439 450 NT5DC2 5-nucleotidase domain-containing protein 2 yes yes 2 0.052681 43.282 By MS/MS 1 2.3541 2.3489 NaN 1 Median 2.3541 2.3489 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2588900 823460 1765400 2588900 823460 1765400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1892 3989 1974 9876 10156 10156 1 ALFPGDSEIDQLFR WGMTAVSTPYPVTRRALFPGDSEIDQLFRI RALFPGDSEIDQLFRIFRTLGTPDEVVWPG R A L F R I 1 1 0 2 0 1 1 1 0 1 2 0 0 2 1 1 0 0 0 0 0 0 14 0 1606.7991 G3V5T9;P24941;E7ESI2;Q00526;K7EJ83 G3V5T9 249 262 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 yes no 2 6.8745E-26 155.26 By MS/MS By MS/MS By matching 2 1 1 0.99821 0.88891 14.928 4 Median NaN NaN NaN 0 0 Median 0.95977 0.79812 18.794 2 1 Median 1.0134 0.99174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98328 0.86683 NaN 1 0 Median 56392000 28476000 27917000 0 0 0 47187000 23800000 23387000 8862000 4504200 4357800 0 0 0 0 0 0 343150 171580 171570 1893 1120 1975 9877;9878;9879;9880 10157;10158;10159;10160 10160 4 ALFQDIK GYERLLKMQNQRGGRALFQDIKKPAEDEWG MQNQRGGRALFQDIKKPAEDEWGKTPDAMK R A L I K K 1 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 833.4647 P02792 P02792 77 83 FTL Ferritin light chain yes yes 2 0.016985 67.035 By MS/MS By MS/MS By MS/MS 1 1 1 1.361 1.2856 60.226 3 Median 1.361 1.2856 NaN 1 0 Median 0.56371 0.48367 NaN 1 0 Median 1.5182 1.4504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16562000 7750200 8812300 9878300 3820500 6057800 5340000 3475600 1864500 1344100 454090 890030 0 0 0 0 0 0 0 0 0 1894 1837 1976 9881;9882;9883 10161;10162;10163;10164;10165 10161 5 ALFQLSR ADVKEEFVEDAAALKALFQLSRLEERSVLF VEDAAALKALFQLSRLEERSVLFAVASALV K A L S R L 1 1 0 0 0 1 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 7 0 833.47594 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 713 719 UNC45A Protein unc-45 homolog A yes no 2 0.016334 68.915 By MS/MS By matching By matching 1 1 1 1.3898 1.2097 7.7258 3 Median 1.1735 1.1411 NaN 1 0 Median 1.3898 1.2097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5228 1.3299 NaN 1 0 Median 5612300 2570300 3042000 3254700 1571900 1682800 1963500 853630 1109800 0 0 0 0 0 0 0 0 0 394120 144820 249300 1895 335 1977 9884;9885;9886 10166 10166 1 ALFQNTER LAAAFSSSEVKALIRALFQNTERRAAALAK EVKALIRALFQNTERRAAALAKIK______ R A L E R R 1 1 1 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 977.49304 O43264 O43264 763 770 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.011256 57.281 By MS/MS 1 1.4537 1.2667 NaN 1 Median NaN NaN NaN 0 0 Median 1.4537 1.2667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1899100 765500 1133600 0 0 0 1899100 765500 1133600 0 0 0 0 0 0 0 0 0 0 0 0 1896 1562 1978 9887 10167 10167 1 ALFQPLTPGSR VRRSFQIPRKSREKKALFQPLTPGSREFED REKKALFQPLTPGSREFEDVVNILHSSYLE K A L S R E 1 1 0 0 0 1 0 1 0 0 2 0 0 1 2 1 1 0 0 0 0 0 11 0 1185.6506 Q9UK61 Q9UK61 111 121 FAM208A Protein FAM208A yes yes 2 0.00017984 78.113 By MS/MS By matching 1 2 1.3177 1.1017 26.053 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77589 0.80226 NaN 1 0 Median 1.4631 1.2172 14.102 2 0 Median 8859100 4766400 4092700 0 0 0 0 0 0 0 0 0 0 0 0 7859600 4351000 3508600 999520 415400 584110 1897 4307 1979 9888;9889;9890 10168 10168 1 ALGDLISATK ETQVVLINAVKDVAKALGDLISATKAAAGK KDVAKALGDLISATKAAAGKVGDDPAVWQL K A L T K A 2 0 0 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 987.56006 Q9Y490 Q9Y490 2090 2099 TLN1 Talin-1 yes yes 2 0.00033827 85.731 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.418 1.4417 24.063 5 Median 0.93613 0.90219 NaN 1 0 Median 1.516 1.3461 9.7001 2 0 Median 1.406 1.5541 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5754 1.6522 NaN 1 1 Median NaN NaN NaN 0 0 Median 54380000 23233000 31146000 17363000 8388400 8974400 22429000 8341700 14087000 9894700 4508500 5386200 0 0 0 4693500 1994800 2698700 0 0 0 1898 4441 1980 9891;9892;9893;9894;9895 10169;10170;10171;10172;10173 10169 5 ALGDQILFVNRPDK EDIEEALPNSQKAVKALGDQILFVNRPDKK KALGDQILFVNRPDKKKILFFNDKSCQFSV K A L D K K 1 1 1 2 0 1 0 1 0 1 2 1 0 1 1 0 0 0 0 1 0 0 14 1 1584.8624 P29084;E5RH41 P29084 184 197 GTF2E2 Transcription initiation factor IIE subunit beta yes no 3 0.047417 24.558 By MS/MS 1 0.97412 1.0623 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97412 1.0623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2976500 1369400 1607100 0 0 0 0 0 0 2976500 1369400 1607100 0 0 0 0 0 0 0 0 0 1899 2168 1981 9896 10174 10174 1 ALGEPITLFGEGPAER INVSTDDSEVKACLRALGEPITLFGEGPAE LGEPITLFGEGPAERRERLRNILSVVGTDA R A L E R R 2 1 0 0 0 0 3 3 0 1 2 0 0 1 2 0 1 0 0 0 0 0 16 0 1655.8519 O43172 O43172 114 129 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 1.5719E-08 151.1 By MS/MS By MS/MS By MS/MS 1 2 1 0.85501 0.73472 7.8419 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78531 0.75936 10.758 2 0 Median 0.85501 0.73472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58067000 33082000 24985000 0 0 0 0 0 0 55812000 31925000 23887000 2255000 1157300 1097600 0 0 0 0 0 0 1900 1557 1982 9897;9898;9899;9900 10175;10176;10177;10178;10179 10177 5 ALGEYLER RSLERLADLLGKIQKALGEYLERERSSFPR LLGKIQKALGEYLERERSSFPRFYFVGDED K A L E R E 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 Q14204 Q14204 1614 1621 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0022721 139.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.2362 1.0781 4.1744 5 Median 1.0703 1.0372 NaN 1 0 Median 1.2409 0.99137 NaN 1 0 Median 1.0399 1.0856 NaN 1 0 Median 1.2362 1.0781 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3193 1.0973 NaN 1 0 Median 138210000 65722000 72487000 35445000 17656000 17790000 42831000 19891000 22940000 43383000 20950000 22432000 14019000 6206900 7812100 0 0 0 2531500 1018400 1513100 1901 2865 1983 9901;9902;9903;9904;9905 10180;10181;10182;10183;10184;10185;10186;10187;10188;10189 10184 10 ALGEYLERER RSLERLADLLGKIQKALGEYLERERSSFPR GKIQKALGEYLERERSSFPRFYFVGDEDLL K A L E R S 1 2 0 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 10 1 1234.6306 Q14204 Q14204 1614 1623 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00046051 65.5 By MS/MS By MS/MS 1 1 1.2874 1.4069 9.7828 2 Median 1.3874 1.5077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1946 1.3129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8461200 4143400 4317800 4043800 1770900 2272900 0 0 0 4417400 2372500 2044900 0 0 0 0 0 0 0 0 0 1902 2865 1984 9906;9907 10190;10191;10192 10192 3 ALGFMYIR QVMGLITHTDSPYIRALGFMYIRYTQPPTD TDSPYIRALGFMYIRYTQPPTDLWDWFESF R A L I R Y 1 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 0 8 0 969.51061 Q5VTL8;A0A0A0MRN0 Q5VTL8 159 166 PRPF38B Pre-mRNA-splicing factor 38B yes no 2 0.0035633 88.591 By matching By MS/MS By matching By matching By matching 1 2 1 1 2 1.2724 1.2432 10.036 7 Median NaN NaN NaN 0 0 Median 1.3943 1.2432 NaN 1 0 Median 1.243 1.2111 3.9734 2 0 Median 1.1414 0.9879 NaN 1 0 Median 1.2724 1.2797 NaN 1 0 Median 1.3102 1.1504 12.491 2 0 Median 15122000 6626300 8495700 0 0 0 358300 137490 220810 13464000 5986800 7477700 176860 72267 104600 598270 199020 399250 524070 230660 293410 1903 3111 1985 9908;9909;9910;9911;9912;9913;9914 10193;10194 10194 2 ALGFPLER VSRALGVLAQLIWSRALGFPLERPKSMSTE AQLIWSRALGFPLERPKSMSTEGLMKFVDS R A L E R P 1 1 0 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 901.50215 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 441 448 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.013618 52.683 By matching By MS/MS 1 1 0.76478 0.76304 6.1552 2 Median 0.73691 0.73054 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79371 0.79698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3072700 1551900 1520900 1403400 694820 708610 0 0 0 1669300 857070 812240 0 0 0 0 0 0 0 0 0 1904 594 1986 9915;9916 10195 10195 1 ALGFPLERPK VSRALGVLAQLIWSRALGFPLERPKSMSTE LIWSRALGFPLERPKSMSTEGLMKFVDSKS R A L P K S 1 1 0 0 0 0 1 1 0 0 2 1 0 1 2 0 0 0 0 0 0 0 10 1 1126.6499 O75390;B4DJV2;A0A0C4DGI3 O75390 441 450 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.0018714 93.429 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.81035 0.82324 23.969 6 Median 0.65497 0.65015 NaN 1 0 Median 0.79494 0.74668 NaN 1 0 Median 0.7431 0.79777 22.869 2 0 Median 1.1002 1.0557 21.376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122390000 69879000 52514000 73895000 44272000 29623000 4478400 2535600 1942800 19148000 11175000 7972300 24872000 11896000 12976000 0 0 0 0 0 0 1905 594 1987 9917;9918;9919;9920;9921;9922 10196;10197;10198;10199;10200 10200 5 ALGFVSDR LPYIKQEVPIIIVFRALGFVSDRDILEHII PIIIVFRALGFVSDRDILEHIIYDFEDPEM R A L D R D 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 863.45012 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 268 275 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.031031 38.792 By MS/MS 1 1.3368 1.1328 NaN 1 Median NaN NaN NaN 0 0 Median 1.3368 1.1328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4106600 2037600 2069100 0 0 0 4106600 2037600 2069100 0 0 0 0 0 0 0 0 0 0 0 0 1906 671 1988 9923 10201 10201 1 ALGGEDVR AEKQYGFCKGSVIQKALGGEDVRVTCTLFQ KGSVIQKALGGEDVRVTCTLFQTQPVIPQP K A L V R V 1 1 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 815.41373 CON__P12763 CON__P12763 238 245 yes yes 2 0.0072153 81.784 By MS/MS By MS/MS By MS/MS 1 2 1 0.03585 0.036002 187.33 3 Median 0.0041304 0.0038833 NaN 1 1 Median 0.1857 0.1607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.03585 0.036002 NaN 1 1 Median NaN NaN NaN 0 0 Median 44620000 42081000 2538500 30497000 30413000 83907 8371600 6165800 2205900 0 0 0 0 0 0 5751400 5502700 248720 0 0 0 + 1907 755 1989 9924;9925;9926;9927 10202;10203;10204;10205 10203 4 ALGHQLGR SPFGPAGTGKTESVKALGHQLGRFVLVFNC GKTESVKALGHQLGRFVLVFNCDETFDFQA K A L G R F 1 1 0 0 0 1 0 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 850.47733 Q14204 Q14204 1918 1925 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.024981 43 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.9816 0.91037 59.147 4 Median 0.84299 0.81952 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.143 1.2768 NaN 1 0 Median 0.35347 0.33046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2085 1.0113 NaN 1 0 Median 1450800 689000 761790 52472 32623 19849 0 0 0 640760 312080 328670 86754 60814 25940 0 0 0 670810 283480 387330 1908 2865 1990 9928;9929;9930;9931 10206;10207;10208 10208 3 ALGLDTGQQQDAQEFSK QNSNRRYIDPSGFVKALGLDTGQQQDAQEF GLDTGQQQDAQEFSKLFMSLLEDTLSKQKN K A L S K L 2 0 0 2 0 4 1 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 17 0 1834.8697 Q86UV5 Q86UV5 171 187 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2 7.2164E-32 202.44 By MS/MS By MS/MS By matching 3 2 1 0.96514 0.97694 19.329 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97734 1.0374 25.432 3 1 Plateau 1.1822 1.0254 7.6343 2 0 Median NaN NaN NaN 0 0 Median 0.95309 0.79619 NaN 1 0 Median 88921000 41800000 47120000 0 0 0 0 0 0 76271000 36221000 40049000 12132000 5325000 6806900 0 0 0 517890 254080 263800 1909 3281 1991 9932;9933;9934;9935;9936;9937 10209;10210;10211;10212;10213 10210 5 ALGLEESLVQEGR KAMEEKLEALLEKTKALGLEESLVQEGRAR TKALGLEESLVQEGRAREQEEKYWRGQDVV K A L G R A 1 1 0 0 0 1 3 2 0 0 3 0 0 0 0 1 0 0 0 1 0 0 13 0 1399.7307 E9PGC8;P78559 E9PGC8 1858 1870 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 2 5.2432E-09 101.95 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1910 923 1992 9938 10214 10214 1 ALGLFSNDIPHVVR ASERRTASALFAGFRALGLFSNDIPHVVRF RALGLFSNDIPHVVRFSALKRRFYVTTCVG R A L V R F 1 1 1 1 0 0 0 1 1 1 2 0 0 1 1 1 0 0 0 2 0 0 14 0 1536.8413 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 19 32 WDR36 WD repeat-containing protein 36 yes no 3 0.00021802 59.898 By MS/MS By matching By matching 1 1 1 1.0672 1.1635 21.056 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0709 1.1635 NaN 1 0 Median 0.93167 0.7668 NaN 1 0 Median 0.97752 0.99407 NaN 1 0 Median NaN NaN NaN 0 0 Median 4369800 1969100 2400700 0 0 0 0 0 0 3801700 1713800 2087900 96690 41045 55645 471380 214270 257120 0 0 0 1911 188 1993 9939;9940;9941 10215;10216 10215 2 ALGLNENDYK LARLDPRLFCKALFKALGLNENDYKFGLTK KALFKALGLNENDYKFGLTKVFFRPGKFAE K A L Y K F 1 0 2 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1135.551 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22 A0A0A0MRM8 741 750 MYO6 Unconventional myosin-VI yes no 2 0.002296 76.064 By MS/MS By MS/MS 1 1 1.6294 1.4781 63.829 2 Median 2.3936 2.3212 NaN 1 1 Median 1.1091 0.9412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15243000 5776700 9466700 8294900 2757300 5537500 6948500 3019300 3929100 0 0 0 0 0 0 0 0 0 0 0 0 1912 164 1994 9942;9943 10217;10218;10219 10217 3 ALGLQFHSR EATYSQLAHPIQQAKALGLQFHSRILDIDN PIQQAKALGLQFHSRILDIDNVDLAMGKMM K A L S R I 1 1 0 0 0 1 0 1 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1027.5563 O43615 O43615 360 368 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 0.0030333 67.897 By matching By MS/MS By MS/MS 1 1 1 1.0054 0.93543 27.682 2 Median 0.77241 0.76913 NaN 1 0 Median 1.3086 1.1377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15230000 7139700 8090600 10039000 4886400 5152800 5191000 2253200 2937700 0 0 0 0 0 0 0 0 0 0 0 0 1913 1577 1995 9944;9945;9946 10220;10221 10221 2 ALGLSTDDAYEELR NARHSDASLTDTVNKALGLSTDDAYEELRQ KALGLSTDDAYEELRQKHEYELNSTPDKKD K A L L R Q 2 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 14 0 1551.7417 Q9UK61;A0A087X0F1 Q9UK61 796 809 FAM208A Protein FAM208A yes no 2 5.4319E-08 103.34 By matching By MS/MS By matching 1 2 1 1.6929 1.774 88.28 4 Median NaN NaN NaN 0 0 Median 6.7599 5.926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6929 1.774 58.919 2 0 Median 1.0032 0.8257 NaN 1 0 Median 10914000 4300900 6612800 0 0 0 568270 74296 493980 0 0 0 0 0 0 9899100 4019700 5879400 446280 206840 239440 1914 4307 1996 9947;9948;9949;9950 10222 10222 1 ALGNSEEATMLQHR DIFKSIDGNRQKMVKALGNSEEATMLQHRL KALGNSEEATMLQHRLDDMNQRWNDLKAKS K A L H R L 2 1 1 0 0 1 2 1 1 0 2 0 1 0 0 1 1 0 0 0 0 0 14 0 1555.7413 P46939;Q5T097;Q5T098 P46939 2519 2532 UTRN Utrophin yes no 3 0.034343 32.624 By matching By MS/MS 1 1 1.2815 1.1641 4.1439 2 Median 1.2188 1.1988 NaN 1 0 Median 1.3474 1.1305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10236000 5614800 4620900 9140700 5174600 3966100 1095100 440270 654800 0 0 0 0 0 0 0 0 0 0 0 0 1915 2349 1997 9951;9952 10223 10223 0 ALGPEQLLR SVLKKSRRRGRGWTRALGPEQLLRACEAIT GRGWTRALGPEQLLRACEAITVGKVDLSSW R A L L R A 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 995.57638 P36915;A0A140T8Y2 P36915 284 292 GNL1 Guanine nucleotide-binding protein-like 1 yes no 2 0.00093857 89.55 By MS/MS By matching By matching 2 1 1 0.84474 0.84203 23.207 4 Median 0.84474 0.84203 3.203 2 0 Median NaN NaN NaN 0 0 Median 0.78774 0.82265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5653 1.3264 NaN 1 0 Median 5616000 2797200 2818800 4432600 2139700 2292900 0 0 0 1097100 615080 482040 0 0 0 0 0 0 86294 42441 43853 1916 2263 1998 9953;9954;9955;9956 10224;10225 10225 2 ALGQAASDNSGPEDAKR IPLLLQLTSRLQGVRALGQAASDNSGPEDA GQAASDNSGPEDAKRQAKKQKTRRTLRLQE R A L K R Q 4 1 1 2 0 1 1 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 17 1 1685.7969 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;H3BUC9 A0A0G2JN29 1196 1212 NOMO1 Nodal modulator 1 yes no 3 0.0003841 37.083 By MS/MS 1 1.1658 1.1076 NaN 1 Median NaN NaN NaN 0 0 Median 1.1658 1.1076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1694400 709010 985420 0 0 0 1694400 709010 985420 0 0 0 0 0 0 0 0 0 0 0 0 1917 117 1999 9957 10226 10226 1 ALGQNPTNAEVLK GDGKILYSQCGDVMRALGQNPTNAEVLKVL MRALGQNPTNAEVLKVLGNPKSDEMNVKVL R A L L K V 2 0 2 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1353.7252 P14649;F8W1I5;F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;F8VPF3 F8W1R7 38 50 MYL6B;MYL6 Myosin light chain 6B;Myosin light polypeptide 6 no no 2 3.8547E-07 143.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 3 2 4 3 0.84957 0.77026 9.4481 19 Median 0.89273 0.78884 11.178 5 0 Median 0.88991 0.73874 2.9467 3 0 Median 0.70565 0.66567 9.7432 3 0 Median 0.88377 0.71706 13.781 2 0 Median 0.78013 0.85251 11.576 3 0 Median 0.99728 0.81965 4.9162 3 0 Plateau 1609800000 810630000 799190000 475260000 232090000 243170000 852390000 422400000 429990000 81962000 46345000 35617000 30631000 14733000 15898000 150330000 85191000 65135000 19247000 9874100 9373200 1918 1082;2008 2000 9958;9959;9960;9961;9962;9963;9964;9965;9966;9967;9968;9969;9970;9971;9972;9973;9974;9975;9976;9977 10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240;10241;10242;10243;10244;10245;10246;10247;10248;10249;10250;10251;10252;10253;10254;10255;10256;10257;10258;10259;10260;10261 10261 35 ALGSAQYEDPR ERDPFTCPGFASQDKALGSAQYEDPRNLHS SQDKALGSAQYEDPRNLHSAGRSSSPAGET K A L P R N 2 1 0 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1205.5677 Q9BTC0 Q9BTC0 1694 1704 DIDO1 Death-inducer obliterator 1 yes yes 2 0.053991 26.105 By MS/MS 1 0.74724 0.83756 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74724 0.83756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1596100 1008000 588080 0 0 0 0 0 0 1596100 1008000 588080 0 0 0 0 0 0 0 0 0 1919 3824 2001 9978 10262 10262 1 ALGSEVQDASK EEMEVRSVVADTDQKALGSEVQDASKVTTQ TDQKALGSEVQDASKVTTQIDKEKKEIPVS K A L S K V 2 0 0 1 0 1 1 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1103.5459 Q9H2G2 Q9H2G2 664 674 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.00041805 102.06 By matching By MS/MS 1 3 0.91521 0.83551 12.653 3 Median 0.91521 0.8632 NaN 1 0 Median 0.85501 0.75561 14.215 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6968900 3746900 3222000 1989200 1058700 930520 4979700 2688200 2291500 0 0 0 0 0 0 0 0 0 0 0 0 1920 3942 2002 9979;9980;9981;9982 10263;10264;10265;10266;10267 10267 5 ALGTEVIQLFPEK FLGSELACALGRKARALGTEVIQLFPEKGN ARALGTEVIQLFPEKGNMGKILPEYLSNWT R A L E K G 1 0 0 0 0 1 2 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1443.7973 O95831 O95831 325 337 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 3.8547E-07 119.53 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.2897 1.118 26.344 8 Median 0.952 0.92852 10.406 2 0 Median 1.2897 1.118 2.5062 2 0 Median 1.3115 1.3708 51.943 2 0 Median 1.5439 1.3272 NaN 1 0 Median 1.4002 1.3824 NaN 1 0 Median NaN NaN NaN 0 0 Median 47065000 22578000 24488000 19011000 10013000 8998000 22359000 10033000 12326000 4740600 2134200 2606400 747430 299860 447570 207890 98582 109310 0 0 0 1921 1797 2003 9983;9984;9985;9986;9987;9988;9989;9990 10268;10269;10270;10271;10272;10273;10274;10275;10276;10277 10268 10 ALGTLGMTTNEKGQVVTK TRAEKKRMAMAMRQKALGTLGMTTNEKGQV TLGMTTNEKGQVVTKTALLKQMEELIEEPG K A L T K T 1 0 1 0 0 1 1 3 0 0 2 2 1 0 0 0 4 0 0 2 0 0 18 1 1846.9822 Q5T4S7;X6R960 Q5T4S7 4803 4820 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.015238 30.593 By MS/MS 1 0.7376 0.80376 NaN 1 Median 0.7376 0.80376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8805000 5984200 2820800 8805000 5984200 2820800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1922 3089 2004 9991 10278 10278 1 ALGTLVSHVTLR PFLSLAACVMPSRLKALGTLVSHVTLRLLK RLKALGTLVSHVTLRLLKPECVLDKSWCQE K A L L R L 1 1 0 0 0 0 0 1 1 0 3 0 0 0 0 1 2 0 0 2 0 0 12 0 1265.7456 Q92616 Q92616 915 926 GCN1L1 Translational activator GCN1 yes yes 2;3 6.4581E-05 85.958 By MS/MS By MS/MS By matching 1 5 1 1.2405 1.1087 10.352 6 Median 1.2327 1.1583 NaN 1 0 Median 1.2707 1.0597 4.9539 4 0 Median 1.2277 1.363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39868000 16717000 23151000 9671800 4175600 5496300 28588000 11908000 16681000 1607600 633170 974420 0 0 0 0 0 0 0 0 0 1923 3544 2005 9992;9993;9994;9995;9996;9997;9998 10279;10280;10281;10282;10283;10284;10285;10286;10287;10288 10284 10 ALGTPNNEVWPEVESLQDYK FHGDSEIDQLFRIFRALGTPNNEVWPEVES NNEVWPEVESLQDYKNTFPKWKPGSLASHV R A L Y K N 1 0 2 1 0 1 3 1 0 0 2 1 0 0 2 1 1 1 1 2 0 0 20 0 2288.0961 P06493;A0A024QZP7 P06493 219 238 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 0.040713 20.381 By matching By MS/MS By matching 1 1 1 0.78371 0.76356 13.089 3 Plateau 0.76151 0.74872 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80656 0.77377 NaN 1 0 Median 0.72271 0.60784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4556800 2586600 1970100 2126600 1149100 977510 0 0 0 2267400 1338400 929000 162790 99163 63628 0 0 0 0 0 0 1924 1871 2006 9999;10000;10001 10289;10290 10290 2 ALGVLAQLIWSR MTEMNYYTVLFGVSRALGVLAQLIWSRALG VSRALGVLAQLIWSRALGFPLERPKSMSTE R A L S R A 2 1 0 0 0 1 0 1 0 1 3 0 0 0 0 1 0 1 0 1 0 0 12 0 1325.782 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 429 440 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 9.5692E-05 91.855 By MS/MS By MS/MS By matching 3 1 1 1.3571 1.1584 7.1579 5 Median NaN NaN NaN 0 0 Median 1.3571 1.1787 5.3049 3 0 Plateau 1.1024 1.1054 NaN 1 0 Median 1.4722 1.2895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46026000 20037000 25988000 0 0 0 40191000 17313000 22878000 5533800 2604300 2929500 301140 120100 181040 0 0 0 0 0 0 1925 594 2007 10002;10003;10004;10005;10006 10291;10292;10293;10294 10293 4 ALGVTEDR NVKELQAACRARGMRALGVTEDRLRGQLKQ CRARGMRALGVTEDRLRGQLKQWLDLHLHQ R A L D R L 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 859.43995 O95202 O95202 386 393 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.036811 37.558 By MS/MS 1 1.2169 1.2675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2169 1.2675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1022900 415160 607690 0 0 0 0 0 0 1022900 415160 607690 0 0 0 0 0 0 0 0 0 1926 1754 2008 10007 10295 10295 1 ALGWTGSTGAALMR AKNRKAVGRVLQQYRALGWTGSTGAALMRE RALGWTGSTGAALMRERDMQYVQRMKSKWM R A L M R E 3 1 0 0 0 0 0 3 0 0 2 0 1 0 0 1 2 1 0 0 0 0 14 0 1390.7027 Q969S3 Q969S3 428 441 ZNF622 Zinc finger protein 622 yes yes 2 9.8482E-08 115.78 By MS/MS By MS/MS 1 1 0.83056 0.82018 2.3315 2 Median 0.8432 0.80677 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.81811 0.83381 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15466000 7991500 7474600 8565000 4185900 4379100 0 0 0 6901100 3805600 3095500 0 0 0 0 0 0 0 0 0 1927 3586 2009 10008;10009 10296;10297 10296 2 ALGYFAVVTGK SRIQQIIEGKLFPMKALGYFAVVTGKGNSS FPMKALGYFAVVTGKGNSSESIEAIREYEE K A L G K G 2 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 1 2 0 0 11 0 1124.623 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3 A0A2R8Y3X5 389 399 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.0021689 54.982 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1.3585 1.2919 17.883 7 Median 1.3216 1.296 0.45353 2 0 Median 1.6473 1.4875 16.789 2 0 Median 1.1565 1.2063 NaN 1 0 Median 1.0047 0.91108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4424 1.2543 NaN 1 0 Median 7260400 2775100 4485300 5430600 2140500 3290100 1092400 345560 746800 596970 230960 366010 63553 22232 41321 0 0 0 76933 35824 41109 1928 357 2010 10010;10011;10012;10013;10014;10015;10016 10298 10298 1 ALHFVFK ______________________________ ______________________________ R A L F K V 1 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 0 0 0 1 0 0 7 0 860.49086 Q9HC38;I3L3Q4;I3NI27;I3NI24;I3L2C2;I3L1F4;I3L277 Q9HC38 6 12 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.03586 60.001 By MS/MS 1 1.241 1.1302 NaN 1 Median 1.241 1.1302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18044000 7568500 10475000 18044000 7568500 10475000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1929 4025 2011 10017 10299 10299 1 ALHHGIDLEK SGAQRIHDPQLLTERALHHGIDLEKIKAYI LLTERALHHGIDLEKIKAYIDSFRFGAPPH R A L E K I 1 0 0 1 0 0 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1131.6037 P14868;H7BZ35 P14868 442 451 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00070303 109.48 By matching By MS/MS 2 1 1.1756 1.0013 8.5553 3 Median 1.0944 1.0677 10.901 2 0 Median 1.1756 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8181100 3710100 4471000 3647900 1709100 1938800 4533100 2000900 2532200 0 0 0 0 0 0 0 0 0 0 0 0 1930 2012 2012 10018;10019;10020 10300;10301 10301 2 ALHSLLLR DYLHLSRLGYTPVCRALHSLLLRLLAQDQG GYTPVCRALHSLLLRLLAQDQGQGAPLLEP R A L L R L 1 1 0 0 0 0 0 0 1 0 4 0 0 0 0 1 0 0 0 0 0 0 8 0 921.57599 Q15102;M0R1K3 Q15102 207 214 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 1.1275E-05 161.47 By MS/MS By MS/MS By matching 1 1 1 0.93216 0.88597 10.301 3 Median 0.93216 0.88597 NaN 1 0 Median 1.2196 1.0314 NaN 1 0 Median 0.90595 0.8474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40937000 20682000 20255000 31580000 16613000 14967000 8105000 3429400 4675600 1251500 639030 612480 0 0 0 0 0 0 0 0 0 1931 2928 2013 10021;10022;10023 10302;10303;10304 10303 3 ALHTQLEMQAK TKIQTEIIEQEDLIKALHTQLEMQAKEHDE DLIKALHTQLEMQAKEHDERIKQLQVELCE K A L A K E 2 0 0 0 0 2 1 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1268.6547 Q14789;E7EU81 Q14789 1438 1448 GOLGB1 Golgin subfamily B member 1 yes no 2;3 2.9565E-06 119.22 By MS/MS By MS/MS By matching 2 4 1 1.4183 1.2562 40.57 6 Median 2.0292 1.9692 38.686 2 0 Median 1.3361 1.1898 22.719 3 0 Median NaN NaN NaN 0 0 Median 0.96624 0.88592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30973000 10406000 20567000 4912100 1218400 3693700 25706000 9025700 16680000 0 0 0 355610 162390 193220 0 0 0 0 0 0 1932 2900 2014 10024;10025;10026;10027;10028;10029;10030 10305;10306;10307;10308;10309;10310;10311;10312 10310 8 ALIAAQLDNAIEK LSKKVERREKRREEKALIAAQLDNAIEKEL EKALIAAQLDNAIEKELLERLKQDTYGDIY K A L E K E 4 0 1 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1368.7613 Q9BXY0 Q9BXY0 152 164 MAK16 Protein MAK16 homolog yes yes 2 7.9643E-07 102.52 By matching By MS/MS By MS/MS By matching 1 1 2 3 1.2361 1.1044 5.1664 7 Median NaN NaN NaN 0 0 Median 1.3296 1.1329 NaN 1 0 Median 1.0261 1.1057 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0416 1.02 4.9543 2 0 Median 1.3687 1.1336 3.9038 3 0 Plateau 20708000 9337100 11371000 0 0 0 112510 44373 68142 3369500 1585000 1784400 0 0 0 13090000 6041700 7048500 4135400 1666000 2469400 1933 3883 2015 10031;10032;10033;10034;10035;10036;10037 10313;10314;10315;10316 10316 4 ALIAAQYSGAQVR AGTLYTYPENWRAFKALIAAQYSGAQVRVL FKALIAAQYSGAQVRVLSAPPHFHFGQTNR K A L V R V 4 1 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 13 0 1346.7306 P26641 P26641 18 30 EEF1G Elongation factor 1-gamma yes yes 2;3 1.0809E-30 205.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 7 14 7 7 1.2019 1.0692 40.371 48 Median 1.2223 1.1231 8.2633 7 1 Median 1.1262 0.94201 67.543 7 2 Median 1.3312 1.298 18.713 7 2 Median 1.1103 0.96357 10.245 13 1 Median 1.3031 1.2925 76.526 7 2 Median 1.1578 0.92687 23.857 7 0 Median 8132300000 3585200000 4547100000 526480000 237030000 289450000 109690000 52135000 57553000 1914300000 792870000 1121400000 5191300000 2319000000 2872400000 210130000 105130000 104990000 180420000 79072000 101350000 1934 2149 2016 10038;10039;10040;10041;10042;10043;10044;10045;10046;10047;10048;10049;10050;10051;10052;10053;10054;10055;10056;10057;10058;10059;10060;10061;10062;10063;10064;10065;10066;10067;10068;10069;10070;10071;10072;10073;10074;10075;10076;10077;10078;10079;10080;10081;10082;10083;10084;10085;10086 10317;10318;10319;10320;10321;10322;10323;10324;10325;10326;10327;10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348;10349;10350;10351;10352;10353;10354;10355;10356;10357;10358;10359;10360;10361;10362;10363;10364;10365;10366;10367;10368;10369;10370;10371;10372;10373;10374;10375;10376;10377;10378;10379;10380;10381;10382;10383;10384;10385;10386;10387;10388;10389;10390;10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404 10378 88 ALIADSGLK PVVVRLQGTRVDDAKALIADSGLKILACDD RVDDAKALIADSGLKILACDDLDEAARMVV K A L L K I 2 0 0 1 0 0 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 886.51238 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;A0A0U1RQL1 A0A2R8YDQ9 360 368 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.030433 57.047 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1935 379 2017 10087;10088 10405;10406 10405 2 ALIAEHQTFMEEMTR QRDQEPIPQNIDRVKALIAEHQTFMEEMTR ALIAEHQTFMEEMTRKQPDVDRVTKTYKRK K A L T R K 2 1 0 0 0 1 3 0 1 1 1 0 2 1 0 0 2 0 0 0 0 0 15 0 1805.844 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314;E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073;A0A494C1U5 H3BPE1 7019 7033 MACF1;DST Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin no no 3 3.5241E-11 110.44 By MS/MS By MS/MS By matching 2 2 1 1.243 1.1587 8.2207 5 Median 1.133 1.1117 14.566 2 0 Median 1.3644 1.1751 1.9864 2 0 Median 1.0059 1.0827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40506000 19466000 21040000 29027000 14979000 14048000 6547500 2577000 3970400 4932100 1910300 3021700 0 0 0 0 0 0 0 0 0 1936 1220;934 2018 10089;10090;10091;10092;10093 10407;10408;10409 10408 3 ALIAGGGAPEIELALR IHDALCVIRCLVKKRALIAGGGAPEIELAL LIAGGGAPEIELALRLTEYSRTLSGMESYC R A L L R L 4 1 0 0 0 0 2 3 0 2 3 0 0 0 1 0 0 0 0 0 0 0 16 0 1549.8828 P50991 P50991 420 435 CCT4 T-complex protein 1 subunit delta yes yes 2 3.5582E-10 127.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 1 3 0.98872 0.85151 25.318 17 Median 0.99687 0.92899 25.554 5 0 Median 1.0072 0.86202 3.4061 4 0 Median 0.951 0.94887 15.31 2 0 Median 0.88299 0.75254 3.5594 2 0 Median 1.8025 1.8089 NaN 1 0 Median 0.86482 0.69838 2.7846 3 0 Median 348890000 171380000 177510000 100500000 49315000 51185000 131250000 64234000 67016000 29347000 13283000 16063000 46345000 24087000 22258000 7501600 2229100 5272500 33946000 18227000 15719000 1937 2424 2019 10094;10095;10096;10097;10098;10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110 10410;10411;10412;10413;10414;10415;10416;10417;10418;10419;10420;10421;10422;10423;10424;10425;10426;10427;10428;10429;10430;10431;10432;10433;10434 10416 25 ALIAQLPSPAIDHEQLR WETYEELSPWIEETRALIAQLPSPAIDHEQ IAQLPSPAIDHEQLRQQQEEMRQLRESIAE R A L L R Q 3 1 0 1 0 2 1 0 1 2 3 0 0 0 2 1 0 0 0 0 0 0 17 0 1871.0265 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5905 5921 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.6012E-07 87.148 By MS/MS By MS/MS By MS/MS 1 1 1 0.61822 0.60032 11.325 3 Median 0.61822 0.60032 NaN 1 0 Median 0.86572 0.72658 NaN 1 0 Median 0.56315 0.59427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42979000 25435000 17544000 26533000 14939000 11594000 5585900 2808600 2777300 10861000 7688000 3172500 0 0 0 0 0 0 0 0 0 1938 1220 2020 10111;10112;10113 10435;10436;10437;10438;10439 10436 5 ALIASAGADALAK KHEEAIHAVACHPSKALIASAGADALAKVF SKALIASAGADALAKVFV____________ K A L A K V 6 0 0 1 0 0 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 13 0 1170.6608 F5GYK2;Q9NRL3;M0R317 F5GYK2 619 631 STRN4 Striatin-4 yes no 2 0.020689 30.564 By matching By MS/MS 1 2 1.119 0.93526 44.013 3 Median 0.47378 0.43637 NaN 1 0 Median 1.119 0.93526 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7983500 4753200 3230200 7034300 4322300 2712100 949130 430960 518170 0 0 0 0 0 0 0 0 0 0 0 0 1939 1011 2021 10114;10115;10116 10440 10440 1 ALIDPSSGLPNR RGGMIVDPLRSGFPRALIDPSSGLPNRLPP FPRALIDPSSGLPNRLPPGAVPPGARFDPF R A L N R L 1 1 1 1 0 0 0 1 0 1 2 0 0 0 2 2 0 0 0 0 0 0 12 0 1238.6619 Q5QPM7;Q92530;H0Y555;F5H4Z3 Q5QPM7 220 231 PSMF1 Proteasome inhibitor PI31 subunit yes no 2 0.0021384 77.677 By MS/MS 2 0.69772 0.65275 0.95567 2 Median 0.69772 0.65275 0.95567 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22771000 12971000 9800600 22771000 12971000 9800600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1940 3069 2022 10117;10118 10441;10442 10442 2 ALIDPSSGLPNRLPPGAVPPGAR RGGMIVDPLRSGFPRALIDPSSGLPNRLPP LPNRLPPGAVPPGARFDPFGPIGTSPPGPR R A L A R F 3 2 1 1 0 0 0 3 0 1 3 0 0 0 6 2 0 0 0 1 0 0 23 1 2251.2437 Q5QPM7;Q92530;H0Y555;F5H4Z3 Q5QPM7 220 242 PSMF1 Proteasome inhibitor PI31 subunit yes no 3 1.0549E-11 55.763 By MS/MS By matching By MS/MS 1 2 1 0.40074 0.39891 71.133 4 Median 0.42063 0.45283 NaN 1 0 Median 0.37878 0.33838 5.3449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3867 1.5039 NaN 1 0 Median NaN NaN NaN 0 0 Median 23100000 15058000 8042000 18861000 12906000 5954800 1610300 1028800 581560 0 0 0 0 0 0 2628800 1123200 1505700 0 0 0 1941 3069 2023 10119;10120;10121;10122 10443;10444;10445;10446 10445 4 ALIDQEVK QEDESGIKQAAENIKALIDQEVKNGIPSNR QAAENIKALIDQEVKNGIPSNRIILGGFSQ K A L V K N 1 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 914.5073 A0A087X1K9;E5RGR0;O75608;B4DP64;E5RJ48;E5RI35 A0A087X1K9 34 41 LYPLA1 Acyl-protein thioesterase 1 yes no 2 0.0051787 77.282 By MS/MS By MS/MS By matching 1 2 1 0.93312 0.84167 19.644 4 Median 0.76283 0.7111 NaN 1 0 Median 1.164 1.0019 16.404 2 0 Median 0.82739 0.79401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14666000 7389700 7276800 9425800 5074200 4351500 2713600 1167900 1545800 2527100 1147600 1379500 0 0 0 0 0 0 0 0 0 1942 122 2024 10123;10124;10125;10126 10447;10448 10447 2 ALIDYENSNK LNIEAAKDLLYRRTKALIDYENSNKALDKA YRRTKALIDYENSNKALDKARLKSKDVKLA K A L N K A 1 0 2 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1165.5615 Q9Y5X3;A0A087WUY5 Q9Y5X3 315 324 SNX5 Sorting nexin-5 yes no 2 0.00040727 76.827 By MS/MS By MS/MS 1 1 0.92753 0.82777 25.511 2 Median 0.74019 0.69114 NaN 1 0 Median 1.1623 0.9914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12113000 6124600 5988700 8502100 4497800 4004300 3611100 1626700 1984400 0 0 0 0 0 0 0 0 0 0 0 0 1943 4471 2025 10127;10128 10449;10450;10451;10452 10450 4 ALIEHEMK PEDEAGIKKAAENIKALIEHEMKNGIPANR KAAENIKALIEHEMKNGIPANRIVLGGFSQ K A L M K N 1 0 0 0 0 0 2 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 969.49535 O95372;Q5QPQ1;Q5QPQ0;Q5QPQ3;Q5QPQ2 O95372 101 108 LYPLA2 Acyl-protein thioesterase 2 yes no 2 0.005111 77.674 By MS/MS By MS/MS 1 1 1.161 1.0346 10.889 2 Median 1.2025 1.1174 NaN 1 0 Median 1.1208 0.95793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6921600 2909700 4011900 5860500 2378000 3482500 1061100 531690 529380 0 0 0 0 0 0 0 0 0 0 0 0 1944 1767 2026 10129;10130 10453;10454;10455 10454 3 ALIEILATR KQLKKAMEGAGTDEKALIEILATRTNAEIR AGTDEKALIEILATRTNAEIRAINEAYKED K A L T R T 2 1 0 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 9 0 998.61243 E5RK69;P08133;E7EMC6 P08133 457 465 ANXA6 Annexin;Annexin A6 no no 2 0.00089695 91.853 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.1872 1.1369 33.103 8 Median 0.99678 0.94135 27.161 3 0 Median 1.4931 1.2888 26.152 3 0 Median 1.039 1.0965 NaN 1 0 Median 1.3543 1.1788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88835000 38578000 50257000 39166000 19015000 20150000 45842000 17750000 28092000 3704400 1760700 1943600 122680 51923 70755 0 0 0 0 0 0 1945 1898;854 2027 10131;10132;10133;10134;10135;10136;10137;10138 10456;10457;10458;10459;10460;10461;10462 10458 7 ALIEMEK AQPGSFEYEYAMRWKALIEMEKQQQDQVDR YEYAMRWKALIEMEKQQQDQVDRNIKEARE K A L E K Q 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 7 0 832.43644 Q15233;H7C367;C9JYS8 Q15233 273 279 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.009327 84.244 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 3 2 1.3503 1.1601 9.9022 10 Median NaN NaN NaN 0 0 Median 1.324 1.1218 NaN 1 0 Median 1.0989 1.0605 12.182 2 0 Median 1.3853 1.2178 2.8076 2 0 Median 1.0831 1.1199 15.753 3 0 Median 1.4463 1.1805 1.9602 2 0 Median 294620000 133980000 160640000 0 0 0 12936000 5180500 7756000 137760000 64866000 72891000 62749000 25690000 37058000 64272000 31398000 32874000 16904000 6847400 10056000 1946 2935 2028 10139;10140;10141;10142;10143;10144;10145;10146;10147;10148 10463;10464;10465;10466;10467;10468;10469 10467 7 ALIEMEKQQQDQVDR AQPGSFEYEYAMRWKALIEMEKQQQDQVDR ALIEMEKQQQDQVDRNIKEAREKLEMEMEA K A L D R N 1 1 0 2 0 4 2 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 15 1 1829.8942 Q15233;H7C367;C9JYS8 Q15233 273 287 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 5.5045E-10 137.59 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1.1602 1.1322 17.579 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9047 1.012 NaN 1 0 Median 1.3079 1.2273 NaN 1 0 Median 0.99115 1.0164 2.0033 3 0 Median 1.4708 1.3448 10.626 3 0 Median 80287000 38066000 42221000 0 0 0 0 0 0 5760200 2646100 3114100 1265800 555200 710600 67921000 32719000 35202000 5339600 2145500 3194100 1947 2935 2029;2030 10149;10150;10151;10152;10153;10154;10155;10156 10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481 10474 1609 12 ALIESGLGTDFSPDVGYNGYTR LSSLLTSGPNSPFYKALIESGLGTDFSPDV GTDFSPDVGYNGYTREAYFSVGLQGIAEKD K A L T R E 1 1 1 2 0 0 1 4 0 1 2 0 0 1 1 2 2 0 2 1 0 0 22 0 2331.1019 Q5JRX3 Q5JRX3 364 385 PITRM1 Presequence protease, mitochondrial yes yes 2;3 3.1125E-06 39.509 By MS/MS 2 0.84859 0.84488 2.6865 2 Median 0.84859 0.84488 2.6865 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307200 1773400 1533800 3307200 1773400 1533800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1948 3050 2031 10157;10158 10482;10483 10482 2 ALIESYQNLTR ELQMLLEEEIPSGKRALIESYQNLTRVADY SGKRALIESYQNLTRVADYCENNYIQATDK R A L T R V 1 1 1 0 0 1 1 0 0 1 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1306.6881 B6VEX4;A0A0A0MRT6;Q8IZP0 B6VEX4 18 28 ABI1 Abl interactor 1 yes no 2 0.00019545 101.65 By MS/MS By MS/MS By MS/MS 1 1 2 1.386 1.252 28.666 4 Median 1.5383 1.4648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0747 1.0702 NaN 1 1 Median 1.7029 1.4412 42.128 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34751000 15541000 19210000 10703000 4297900 6405500 0 0 0 17111000 8215200 8895800 6936900 3028000 3909000 0 0 0 0 0 0 1949 171 2032 10159;10160;10161;10162 10484;10485;10486 10484 3 ALIEVLQPLIAEHQAR KDYTSGAMLTGELKKALIEVLQPLIAEHQA LIEVLQPLIAEHQARRKEVTDEIVKEFMTP K A L A R R 3 1 0 0 0 2 2 0 1 2 3 0 0 0 1 0 0 0 0 1 0 0 16 0 1800.0258 P23381 P23381 433 448 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 2;3 3.6028E-05 59.542 By MS/MS By MS/MS By matching By matching 2 2 2 3 1.0096 0.96979 10.698 9 Median 1.1409 1.0703 21.477 2 0 Median 1.1649 0.98141 1.6447 2 0 Median 0.94998 0.97657 7.2681 2 0 Median 1.0096 0.87902 5.804 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138520000 68899000 69619000 78344000 40465000 37880000 50873000 23486000 27386000 5693100 3238800 2454300 3607800 1709500 1898300 0 0 0 0 0 0 1950 2111 2033 10163;10164;10165;10166;10167;10168;10169;10170;10171 10487;10488;10489;10490 10487 4 ALIEWIR STGEPPALDEVPEVRALIEWIRRNKFVLSG LDEVPEVRALIEWIRRNKFVLSGNLHGGSV R A L I R R 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 7 0 899.52289 O75976 O75976 240 246 CPD Carboxypeptidase D yes yes 2 0.012717 77.748 By MS/MS By matching 1 1 1.1721 1.0617 1.8899 2 Median 1.0743 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2787 1.076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795300 1801400 1994000 3496500 1678400 1818100 0 0 0 0 0 0 298800 122950 175860 0 0 0 0 0 0 1951 1714 2034 10172;10173 10491;10492 10492 2 ALIGATNPADAPPGTIR VAMVWQGLDVVRTSRALIGATNPADAPPGT IGATNPADAPPGTIRGDFCIEVGKNLIHGS R A L I R G 4 1 1 1 0 0 0 2 0 2 1 0 0 0 3 0 2 0 0 0 0 0 17 0 1633.8788 Q13232;H3BPR2 Q13232 106 122 NME3 Nucleoside diphosphate kinase 3;Nucleoside diphosphate kinase yes no 2 1.6972E-39 158.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 0.66986 0.52533 70.612 7 Median 0.41459 0.39131 NaN 1 1 Median 0.30825 0.26133 140.04 2 0 Median 0.49707 0.50325 NaN 1 0 Median 0.86176 0.69768 0.84394 2 0 Median NaN NaN NaN 0 0 Median 0.66986 0.52533 NaN 1 0 Median 76819000 53104000 23714000 60387000 42873000 17514000 10771000 6582200 4189000 3077800 2052100 1025700 1682800 920030 762800 0 0 0 899620 677110 222510 1952 2798 2035 10174;10175;10176;10177;10178;10179;10180 10493;10494;10495;10496;10497;10498;10499;10500;10501;10502 10493 10 ALIGDDVGLTSYK RYHSRRIQRDVIKKRALIGDDVGLTSYKHR KRALIGDDVGLTSYKHRHSGLVNVPEEPIE R A L Y K H 1 0 0 2 0 0 0 2 0 1 2 1 0 0 0 1 1 0 1 1 0 0 13 0 1350.7031 Q53F19 Q53F19 317 329 C17orf85 Uncharacterized protein C17orf85 yes yes 2 0.00014477 83.397 By MS/MS By MS/MS 2 2 1.2538 1.2771 40.954 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7373 1.8683 56.143 2 0 Median NaN NaN NaN 0 0 Median 1.2377 1.2216 8.6212 2 0 Median NaN NaN NaN 0 0 Median 22099000 9631300 12468000 0 0 0 0 0 0 6174700 2024500 4150200 0 0 0 15924000 7606800 8317600 0 0 0 1953 3027 2036 10181;10182;10183;10184 10503;10504;10505;10506;10507;10508 10505 5 ALIGQEGDPDLK GKKLIIVASQAMRYRALIGQEGDPDLKLPD RYRALIGQEGDPDLKLPDFSYCILERLGRS R A L L K L 1 0 0 2 0 1 1 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1254.6456 Q12789 Q12789 161 172 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 6.3504E-06 98.249 By MS/MS By MS/MS 1 1 0.69796 0.69847 0.10774 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63361 0.699 NaN 1 0 Median 0.76885 0.69793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14433000 8940300 5492800 0 0 0 0 0 0 12864000 8023000 4841500 1568600 917320 651280 0 0 0 0 0 0 1954 2758 2037 10185;10186 10509;10510;10511 10509 3 ALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQR QLVLALYPQTTCFYRALIHAPPQRPQDDYS SYADGYSPPLNVAQRYVVACKEPKKK____ R A L Q R Y 4 2 1 4 0 3 1 1 1 1 3 0 0 1 5 3 1 0 3 2 0 0 36 1 4029.9497 Q96ES7;H3BN84 Q96ES7 247 282 CCDC101 SAGA-associated factor 29 homolog yes no 4 0.043507 16.362 By MS/MS 1 0.5655 0.59025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5655 0.59025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2002300 1484500 517860 0 0 0 0 0 0 2002300 1484500 517860 0 0 0 0 0 0 0 0 0 1955 3641 2038 10187 10512 10512 1 ALILSPTR MFERLKTHSAQTGARALILSPTRELALQTL SAQTGARALILSPTRELALQTLKFTKELGK R A L T R E 1 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 Q8TDD1;F8VRX4 Q8TDD1 169 176 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.008272 63.565 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 0.55694 0.54668 125.91 6 Median NaN NaN NaN 0 0 Median 0.14589 0.12625 NaN 1 0 Median 0.33947 0.34613 NaN 1 0 Median 0.055831 0.046662 NaN 1 0 Median 0.91373 0.95244 NaN 1 0 Median 1.1039 0.90896 7.2632 2 0 Median 23656000 18401000 5255900 0 0 0 8857000 7987100 869870 10184000 7044300 3139600 2498700 2313700 184960 1106400 645900 460450 1010400 409450 600990 1956 3470 2039 10188;10189;10190;10191;10192;10193 10513;10514;10515 10514 3 ALILTLAR DPKTVLSAESEELNRALILTLARATHVTDF ESEELNRALILTLARATHVTDFFTGSDSIQ R A L A R A 2 1 0 0 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 869.56984 Q5JWT2;Q9ULK4 Q5JWT2 692 699 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 2 0.031031 38.792 By MS/MS 1 1.0792 1.1775 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0792 1.1775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1921200 794950 1126200 0 0 0 0 0 0 1921200 794950 1126200 0 0 0 0 0 0 0 0 0 1957 3059 2040 10194 10516 10516 1 ALILVGGYGTR ______________________________ ______________________________ K A L T R L 1 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1118.6448 Q9Y5P6 Q9Y5P6 3 13 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 2 0.0068249 62.823 By MS/MS 1 0.41604 0.4156 NaN 1 Median 0.41604 0.4156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18458000 14493000 3965000 18458000 14493000 3965000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1958 4465 2041 10195 10517 10517 1 ALINMSSLPAQDK TSCNVVWLDEMTATRALINMSSLPAQDKIR TRALINMSSLPAQDKIRSRDASEDKSAEKR R A L D K I 2 0 1 1 0 1 0 0 0 1 2 1 1 0 1 2 0 0 0 0 0 0 13 0 1386.7177 Q53F19 Q53F19 174 186 C17orf85 Uncharacterized protein C17orf85 yes yes 2 7.9643E-07 102.52 By matching By MS/MS 1 1 0.80735 0.83018 5.9164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77828 0.79617 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83751 0.86565 NaN 1 0 Median NaN NaN NaN 0 0 Median 12331000 7654800 4676600 0 0 0 0 0 0 7568700 4916300 2652400 0 0 0 4762700 2738500 2024200 0 0 0 1959 3027 2042 10196;10197 10518;10519 10518 2 ALINMSSLPAQDKIR TSCNVVWLDEMTATRALINMSSLPAQDKIR ALINMSSLPAQDKIRSRDASEDKSAEKRKK R A L I R S 2 1 1 1 0 1 0 0 0 2 2 1 1 0 1 2 0 0 0 0 0 0 15 1 1655.9029 Q53F19 Q53F19 174 188 C17orf85 Uncharacterized protein C17orf85 yes yes 3 0.00014403 49.482 By MS/MS 1 0.77778 0.85596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77778 0.85596 NaN 1 0 Median NaN NaN NaN 0 0 Median 4460900 2163600 2297300 0 0 0 0 0 0 0 0 0 0 0 0 4460900 2163600 2297300 0 0 0 1960 3027 2043 10198 10520 10520 1 ALINSPEGAVGR YKYLDESSGGWRDGRALINSPEGAVGRSLQ DGRALINSPEGAVGRSLQPLYRSNTSQLAF R A L G R S 2 1 1 0 0 0 1 2 0 1 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1182.6357 K7ENE5;O00115 K7ENE5 66 77 DNASE2 Deoxyribonuclease-2-alpha yes no 2 7.6235E-06 94.309 By MS/MS By MS/MS 1 1 1.1451 1.1157 NaN 1 Median 1.1451 1.1157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5100900 2478100 2622800 5100900 2478100 2622800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1961 1385 2044 10199;10200 10521;10522;10523 10523 3 ALINSQELGDEK DDLNQKKRLQQLLQRALINSQELGDEKIQI LQRALINSQELGDEKIQIVTQMLELVENRA R A L E K I 1 0 1 1 0 1 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 0 1315.662 C9J4X5;Q9H160 C9J4X5 49 60 ING2 Inhibitor of growth protein 2 yes no 2 0.00012977 125.97 By MS/MS By MS/MS 1 1 0.92988 0.83799 0.52598 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87473 0.84111 NaN 1 0 Median 0.98851 0.83488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9662200 5046500 4615700 0 0 0 0 0 0 7698000 4182300 3515700 1964200 864200 1100000 0 0 0 0 0 0 1962 675 2045 10201;10202 10524;10525;10526;10527 10525 4 ALIPLALEGTDVGQTK EVEDRGTVVAQGGGRALIPLALEGTDVGQT LIPLALEGTDVGQTKAAQALAKLTITSNPE R A L T K A 2 0 0 1 0 1 1 2 0 1 3 1 0 0 1 0 2 0 0 1 0 0 16 0 1624.9036 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 832 847 UNC45A Protein unc-45 homolog A yes no 2 5.6725E-05 78.653 By MS/MS By MS/MS 1 2 1.0703 0.9717 2.0612 3 Plateau 0.98211 0.9717 NaN 1 0 Median 1.0887 0.95201 2.3881 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12863000 6503900 6358700 3033900 1616100 1417800 9828700 4887800 4940900 0 0 0 0 0 0 0 0 0 0 0 0 1963 335 2046 10203;10204;10205 10528;10529;10530;10531 10529 4 ALIQCAK AEMSRLVRGGSGTKRALIQCAKDIAKASDE RGGSGTKRALIQCAKDIAKASDEVTRLAKE R A L A K D 2 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 802.43711 P18206 P18206 1014 1020 VCL Vinculin yes yes 2 0.040961 44.611 By MS/MS 1 0.98073 0.85745 NaN 1 Median NaN NaN NaN 0 0 Median 0.98073 0.85745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2589500 1116300 1473200 0 0 0 2589500 1116300 1473200 0 0 0 0 0 0 0 0 0 0 0 0 1964 2057 2047 10206 10532 10532 1 ALIQYFSPYVSADMHR LAPHVRTLYTQIRNRALIQYFSPYVSADMH LIQYFSPYVSADMHRMAAAFNTTVAALEDE R A L H R M 2 1 0 1 0 1 0 0 1 1 1 0 1 1 1 2 0 0 2 1 0 0 16 0 1896.9193 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070;J3QQX0 C9JFE4 353 368 GPS1 COP9 signalosome complex subunit 1 yes no 2;3 0.00016025 44.807 By MS/MS By matching By MS/MS 2 1 1 0.95819 0.96814 108.77 4 Median 0.94467 0.93158 6.8405 2 0 Median 7.7606 8.268 NaN 1 0 Median 0.9352 0.95863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14796000 6449600 8346500 7662800 3907600 3755200 1262500 162810 1099700 5870800 2379200 3491600 0 0 0 0 0 0 0 0 0 1965 695 2048 10207;10208;10209;10210 10533;10534;10535;10536;10537 10537 5 ALISSNVQKDNEIEQLKR EERDQLVAALEIQLKALISSNVQKDNEIEQ SSNVQKDNEIEQLKRIISETSKIETQIMDI K A L K R I 1 1 2 1 0 2 2 0 0 2 2 2 0 0 0 2 0 0 0 1 0 0 18 2 2084.1226 Q96Q89 Q96Q89 1535 1552 KIF20B Kinesin-like protein KIF20B yes yes 3 1.8576E-14 116.43 By MS/MS 1 0.80998 1.0701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80998 1.0701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6695800 3617200 3078600 0 0 0 0 0 0 6695800 3617200 3078600 0 0 0 0 0 0 0 0 0 1966 3717 2049 10211 10538 10538 1 ALIVEPSR NAQVTQTKFLPNAPKALIVEPSRELAEQTL FLPNAPKALIVEPSRELAEQTLNNIKQFKK K A L S R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 8 0 883.51272 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 208 215 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0024442 138.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0402 0.92045 23.897 5 Median 0.80864 0.77924 NaN 1 0 Median 1.0402 0.89956 NaN 1 0 Median 1.1416 1.1894 29.935 2 0 Median 1.068 0.92045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35118000 16557000 18560000 4091200 2124500 1966700 6006200 2832600 3173600 15542000 7479400 8062400 9478700 4121000 5357700 0 0 0 0 0 0 1967 135 2050 10212;10213;10214;10215;10216 10539;10540;10541;10542;10543;10544;10545;10546 10543 8 ALIVEPSRELAEQTLNNIK NAQVTQTKFLPNAPKALIVEPSRELAEQTL EPSRELAEQTLNNIKQFKKYIDNPKLRELL K A L I K Q 2 1 2 0 0 1 3 0 0 2 3 1 0 0 1 1 1 0 0 1 0 0 19 1 2137.1743 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 208 226 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 2.2102E-06 50.608 By MS/MS By matching 1 1 0.93319 0.90778 0.75548 2 Median 0.88922 0.91265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97934 0.90295 NaN 1 0 Median 7816800 3989400 3827400 7500100 3860500 3639500 0 0 0 0 0 0 0 0 0 0 0 0 316710 128860 187850 1968 135 2051 10217;10218 10547;10548 10548 2 ALIVLAHSER ______________________________ MVGRRALIVLAHSERTSFNYAMKEAAAAAL R A L E R T 2 1 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1107.64 B4DLR8;H3BRK3;P15559 B4DLR8 6 15 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 0.00038123 80.165 By MS/MS 1 0.77216 0.64711 NaN 1 Median NaN NaN NaN 0 0 Median 0.77216 0.64711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2848300 1660500 1187900 0 0 0 2848300 1660500 1187900 0 0 0 0 0 0 0 0 0 0 0 0 1969 599 2052 10219 10549;10550 10549 2 ALIVLNNLSVNAENQR VAKILNTRDPIVKEKALIVLNNLSVNAENQ LIVLNNLSVNAENQRRLKVYMNQVCDDTIT K A L Q R R 2 1 4 0 0 1 1 0 0 1 3 0 0 0 0 1 0 0 0 2 0 0 16 0 1766.9639 Q9UH62 Q9UH62 183 198 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 1.1887E-09 117.98 By MS/MS By matching 1 1 1.0121 0.93381 23.287 2 Median 0.79593 0.79204 NaN 1 0 Median 1.2869 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5103500 2559500 2544000 3769900 1932000 1837900 1333600 627560 706070 0 0 0 0 0 0 0 0 0 0 0 0 1970 4269 2053 10220;10221 10551 10551 1 ALIVVPYAEGVIPDEAK AVVAQHLTNTVFVDRALIVVPYAEGVIPDE IVVPYAEGVIPDEAKALSLLAPANAVAGLL R A L A K A 3 0 0 1 0 0 2 1 0 2 1 1 0 0 2 0 0 0 1 3 0 0 17 0 1782.9768 Q5T760;Q05519 Q5T760 104 120 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 2.4113E-05 59.542 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 0.73017 0.70623 14.84 7 Median 0.73017 0.70623 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64922 0.68221 22.394 2 0 Median 0.77372 0.67333 9.5185 2 0 Median 0.55743 0.57211 NaN 1 0 Median 1.0167 0.83445 NaN 1 0 Median 42560000 23555000 19005000 1791400 1073400 718000 0 0 0 38935000 21463000 17473000 846650 447690 398960 878170 532050 346130 108880 39182 69700 1971 2717 2054 10222;10223;10224;10225;10226;10227;10228 10552;10553;10554;10555;10556;10557;10558;10559;10560 10553 9 ALIVVQQGMTPSAK IKVYCQRMQEENITRALIVVQQGMTPSAKQ RALIVVQQGMTPSAKQSLVDMAPKYILEQF R A L A K Q 2 0 0 0 0 2 0 1 0 1 1 1 1 0 1 1 1 0 0 2 0 0 14 0 1441.7963 A0A087WWX0;A0A087WVZ9;A0A0A0MQR7;P19388;A0A087WVN5 A0A087WWX0 26 39 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 2.4602E-11 177.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 3 2 0.94139 0.84518 11.518 12 Median 0.93798 0.86807 NaN 1 0 Median 1.1222 0.94284 NaN 1 0 Median 0.85423 0.80146 12.904 3 0 Median 1.0826 0.89732 3.805 2 0 Median 0.80408 0.8229 19.313 3 0 Median 0.9625 0.79543 2.518 2 0 Median 195300000 103010000 92293000 28459000 14910000 13549000 5443300 2427000 3016300 75767000 40639000 35128000 10241000 4573100 5667700 61161000 33429000 27732000 14233000 7033100 7200300 1972 47 2055;2056 10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239;10240 10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572;10573;10574;10575;10576;10577;10578 10563 22 18 ALKDEEKMELQEIQLK AADESERGMKVIENRALKDEEKMELQEIQL LKDEEKMELQEIQLKEAKHIAEEADRKYEE R A L L K E 1 0 0 1 0 2 4 0 0 1 3 3 1 0 0 0 0 0 0 0 0 0 16 2 1944.0238 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 A0A087WWU8 98 113 TPM3 Tropomyosin alpha-3 chain no no 3;4 4.7647E-05 50.608 By MS/MS By matching By matching By matching 2 1 2 1 1.1123 1.1246 16.731 6 Median 1.175 1.2274 2.1632 2 0 Median 1.0692 1.0463 NaN 1 0 Median 0.80974 0.87384 2.6529 2 0 Median 1.2956 1.2265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113830000 49762000 64066000 106270000 46191000 60079000 2963200 1311900 1651400 3867100 1956600 1910500 726270 301670 424610 0 0 0 0 0 0 1973 63;1303 2057 10241;10242;10243;10244;10245;10246 10579;10580;10581;10582 10579 4 ALKDFVASIDATYAK RLLNNAFEELVAFQRALKDFVASIDATYAK ALKDFVASIDATYAKQYEEFYVGLEGSFGS R A L A K Q 4 0 0 2 0 0 0 0 0 1 1 2 0 1 0 1 1 0 1 1 0 0 15 1 1611.8508 P25205;J3KQ69;A0A499FHX9 P25205 79 93 MCM3 DNA replication licensing factor MCM3 yes no 2;3 0.0045804 44.299 By MS/MS By matching 3 1 0.83939 0.88235 16.413 4 Median 0.794 0.83324 13.568 3 0 Median NaN NaN NaN 0 0 Median 0.92204 1.0471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17379000 8969400 8409300 13281000 7032800 6248300 0 0 0 4097600 1936500 2161000 0 0 0 0 0 0 0 0 0 1974 2129 2058 10247;10248;10249;10250 10583;10584;10585 10585 3 ALKDLLK EAFVVYRWQGDARQKALKDLLKWVLEGKIQ WQGDARQKALKDLLKWVLEGKIQYKEYIIE K A L L K W 1 0 0 1 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 7 1 799.51674 Q14914;F2Z3J9 Q14914 283 289 PTGR1 Prostaglandin reductase 1 yes no 2 0.01567 104.45 By MS/MS 1 0.91083 0.88915 NaN 1 Median 0.91083 0.88915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4837300 2610100 2227200 4837300 2610100 2227200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1975 995 2059 10251 10586 10586 1 ALKDPNAFLFDHLLTLKPVK NASQARVDAHRCIVRALKDPNAFLFDHLLT NAFLFDHLLTLKPVKFLEGELIHDLLTIFV R A L V K F 2 0 1 2 0 0 0 0 1 0 5 3 0 2 2 0 1 0 0 1 0 0 20 2 2279.3042 Q7L2H7;J3KNJ2;H0YCQ8 Q7L2H7 211 230 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 3;4 3.3608E-07 51.348 By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 0.9108 0.86672 17.425 8 Median 0.96924 0.99386 20.709 2 0 Median 1.0036 0.9954 26.136 2 0 Median NaN NaN NaN 0 0 Median 0.9108 0.85735 2.8898 2 0 Median NaN NaN NaN 0 0 Median 0.92357 0.82792 21.021 2 0 Median 88161000 44546000 43614000 20875000 9578400 11297000 33054000 17352000 15702000 0 0 0 22977000 11338000 11639000 0 0 0 11254000 6277700 4976500 1976 3221 2060 10252;10253;10254;10255;10256;10257;10258;10259 10587;10588;10589;10590;10591;10592 10592 6 ALKDYALEK ______________________________ ______________________________ M A L E K E 2 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 1 1049.5757 P33993 P33993 2 10 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.00070442 80.755 By MS/MS By MS/MS By MS/MS 2 3 2 0.85146 0.93816 33.421 7 Median 0.82033 0.70391 46.244 2 0 Median 1.2313 1.1847 34.639 3 0 Median 0.70111 0.78978 24.349 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70339000 36099000 34240000 27410000 14710000 12700000 10823000 4332800 6489800 32107000 17056000 15051000 0 0 0 0 0 0 0 0 0 1977 2225 2061;2062 10260;10261;10262;10263;10264;10265;10266 10593;10594;10595;10596;10597;10598;10599 10593 7 ALKDYALEKEK ______________________________ ______________________________ M A L E K V 2 0 0 1 0 0 2 0 0 0 2 3 0 0 0 0 0 0 1 0 0 0 11 2 1306.7133 P33993 P33993 2 12 MCM7 DNA replication licensing factor MCM7 yes yes 3 5.7089E-05 92.247 By MS/MS 1 0.97371 0.95138 NaN 1 Median 0.97371 0.95138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25731000 13547000 12184000 25731000 13547000 12184000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1978 2225 2063 10267 10600;10601 10600 2 ALKEDAATFSSLR AMVTETMMKLRNELKALKEDAATFSSLRAM LKALKEDAATFSSLRAMFATRCDEYITQLD K A L L R A 3 1 0 1 0 0 1 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 13 1 1407.7358 Q8TD16;A0A087WYJ7;A8MVZ6;Q96G01 Q8TD16 735 747 BICD2;BICD1 Protein bicaudal D homolog 2;Protein bicaudal D homolog 1 yes no 2;3 0.00094695 91.855 By MS/MS 2 1.0987 1.1433 12.796 2 Median 1.0987 1.1433 12.796 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9509500 4770400 4739100 9509500 4770400 4739100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1979 3468 2064 10268;10269 10602;10603 10603 2 ALKEEIGNVQLEK ANKEKTVQDLKQEIKALKEEIGNVQLEKAQ IKALKEEIGNVQLEKAQQLSITSKVQELQN K A L E K A 1 0 1 0 0 1 3 1 0 1 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1469.809 Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 Q86UP2 840 852 KTN1 Kinectin yes no 2;3 1.2118E-29 169.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 2 5 1 2 1.0906 1.0805 28.258 17 Median 1.4585 1.3431 25.831 4 1 Linear 1.1798 1.0927 28.18 3 0 Plateau 0.99875 1.1576 12.204 2 0 Median 1.2281 1.1579 21.01 5 2 Median 0.4978 0.53192 NaN 1 0 Median 0.78784 0.70761 1.9118 2 0 Median 148710000 67237000 81468000 65355000 29005000 36349000 26935000 12276000 14659000 27912000 12887000 15024000 23718000 10096000 13621000 3330500 2175800 1154700 1455900 795900 660040 1980 3280 2065 10270;10271;10272;10273;10274;10275;10276;10277;10278;10279;10280;10281;10282;10283;10284;10285;10286 10604;10605;10606;10607;10608;10609;10610;10611;10612;10613;10614;10615;10616;10617;10618;10619;10620;10621 10606 18 ALKEENIQTLLINPNIATVQTSQGLADK GQAGEFDYSGSQAIKALKEENIQTLLINPN PNIATVQTSQGLADKVYFLPITPHYVTQVI K A L D K V 3 0 3 1 0 3 2 1 0 3 4 2 0 0 1 1 3 0 0 1 0 0 28 1 3021.6346 F8VPD4;P27708 F8VPD4 422 449 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 4.4323E-05 29.011 By MS/MS By matching 1 1 0.90376 0.89143 8.0899 2 Median 0.94573 0.94391 NaN 1 0 Median 0.86366 0.84187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4494900 2171200 2323700 3429400 1644900 1784600 1065400 526300 539140 0 0 0 0 0 0 0 0 0 0 0 0 1981 1057 2066 10287;10288 10622 10622 1 ALKEFEQLRK SKKYHKVVKKGKAKKALKEFEQLRKVNPAA GKAKKALKEFEQLRKVNPAAALEELEKIEK K A L R K V 1 1 0 0 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 2 1260.719 Q9BVJ6;X6RJY0 Q9BVJ6 264 273 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.0016504 51.092 By MS/MS 1 1.2322 1.4521 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2322 1.4521 NaN 1 0 Median NaN NaN NaN 0 0 Median 5957500 2659800 3297700 0 0 0 0 0 0 0 0 0 0 0 0 5957500 2659800 3297700 0 0 0 1982 3855 2067 10289 10623 10623 1 ALKENITDAIWGSESNYEAIK DDSSEKHAYSWDINRALKENITDAIWGSES TDAIWGSESNYEAIKEGVNIRYLDLKQNCD R A L I K E 3 0 2 1 0 0 3 1 0 3 1 2 0 0 0 2 1 1 1 0 0 0 21 1 2351.1645 Q8WUM0 Q8WUM0 315 335 NUP133 Nuclear pore complex protein Nup133 yes yes 3 4.7926E-09 57.009 By matching By MS/MS By matching 1 3 1 1.016 1.0785 22.416 5 Median 0.75947 0.74612 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.016 1.1743 23.188 3 0 Median 1.1321 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15569000 7081400 8487700 1181400 418680 762690 0 0 0 14279000 6610600 7668300 108840 52113 56723 0 0 0 0 0 0 1983 3492 2068 10290;10291;10292;10293;10294 10624;10625 10625 2 ALKPANMLER ERNPENWAYYKGLEKALKPANMLERLKIYE KGLEKALKPANMLERLKIYEEAWTKYPRGL K A L E R L 2 1 1 0 0 0 1 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 10 1 1141.6278 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 267 276 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.008287 78.516 By MS/MS 1 1.0528 1.0969 NaN 1 Median 1.0528 1.0969 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11567000 5492800 6074600 11567000 5492800 6074600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1984 213 2069 10295 10626 10626 1 ALKPEVDKLNIMAAK LRNAGNEQDLGIQYKALKPEVDKLNIMAAK ALKPEVDKLNIMAAKRQQELKDVGHRDQMA K A L A K R 3 0 1 1 0 0 1 0 0 1 2 3 1 0 1 0 0 0 0 1 0 0 15 2 1639.9331 P35221;G3XAM7;E5RIB1;E5RJ41 P35221 179 193 CTNNA1 Catenin alpha-1 yes no 3;4 0.00012462 62.287 By MS/MS By matching By MS/MS By matching 2 2 2 1 0.66966 0.70896 21.358 7 Median 0.82354 0.86328 0.98245 2 0 Median 0.59302 0.59455 9.5301 2 0 Median 0.69049 0.8423 24.373 2 0 Median NaN NaN NaN 0 0 Median 0.56057 0.62496 NaN 1 0 Median NaN NaN NaN 0 0 Median 23589000 12649000 10940000 10636000 5330800 5304700 971680 546430 425250 9418600 5341300 4077300 0 0 0 2563100 1430300 1132800 0 0 0 1985 2232 2070 10296;10297;10298;10299;10300;10301;10302 10627;10628;10629;10630 10628 4 ALKPPHVILVHGEQNEMAR FSAHTDYQQTSEFIRALKPPHVILVHGEQN PHVILVHGEQNEMARLKAALIREYEDNDEV R A L A R L 2 1 1 0 0 1 2 1 2 1 2 1 1 0 2 0 0 0 0 2 0 0 19 1 2138.1419 Q9UKF6;G5E9W3 Q9UKF6 408 426 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3;4 1.3944E-05 48.112 By MS/MS By MS/MS 2 2 0.70017 0.98741 33.343 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73772 0.7841 8.6509 2 0 Median 0.51869 0.51287 38.187 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35299000 18815000 16484000 0 0 0 0 0 0 33552000 17728000 15824000 1747700 1087400 660270 0 0 0 0 0 0 1986 4309 2071 10303;10304;10305;10306 10631;10632;10633;10634;10635 10635 5 ALKPPPIK KDIVISVGIYNLVQKALKPPPIKLYRETNE IYNLVQKALKPPPIKLYRETNEPVKTKTRT K A L I K L 1 0 0 0 0 0 0 0 0 1 1 2 0 0 3 0 0 0 0 0 0 0 8 1 862.56402 P12956;B1AHC9 P12956 280 287 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.030844 70.912 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 0.70073 0.66468 15.603 6 Median 0.64022 0.59974 NaN 1 0 Median 0.9032 0.84189 NaN 1 0 Median 0.57788 0.64632 NaN 1 0 Median 0.8507 0.78549 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68948 0.61931 13.96 2 0 Median 49027000 27597000 21429000 14784000 8930800 5853000 18615000 9611700 9003700 8473300 5124700 3348600 5093800 2791200 2302700 0 0 0 2060300 1138900 921350 1987 1985 2072 10307;10308;10309;10310;10311;10312 10636;10637;10638;10639 10638 4 ALLAANEEEDREIR KTRPSAAATAAARKRALLAANEEEDREIRK RALLAANEEEDREIRKLERCLGLNKRKKKD R A L I R K 3 2 1 1 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 14 1 1627.8166 Q5C9Z4 Q5C9Z4 174 187 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 3 0.00030982 53.754 By matching By MS/MS 1 1 1.7786 2.0152 41.956 2 Median 2.4403 2.7112 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2963 1.4979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8972900 3756700 5216200 1281800 447050 834770 0 0 0 7691100 3309700 4381400 0 0 0 0 0 0 0 0 0 1988 3043 2073 10313;10314 10640 10640 1 ALLAEGVILR LGETDEEKLFVETGKALLAEGVILRRVGEA VETGKALLAEGVILRRVGEARTQHGGSHVS K A L L R R 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1053.6546 Q9Y3D9;J3QLR8 Q9Y3D9 124 133 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.00034189 107.66 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1.2998 1.2389 12.623 7 Median 1.1449 1.086 NaN 1 0 Median 1.4567 1.2389 NaN 1 0 Median 1.0575 1.0115 NaN 1 0 Median 1.2972 1.095 18.51 2 0 Median 1.2998 1.2684 NaN 1 0 Median 1.6425 1.3331 NaN 1 0 Median 20836000 9351900 11484000 12540000 5724800 6815600 1299900 537840 762050 4108200 1913600 2194600 513550 225510 288040 1189200 496110 693110 1184700 453990 730690 1989 4424 2074 10315;10316;10317;10318;10319;10320;10321 10641;10642;10643;10644;10645 10644 5 ALLAEGVILRR LGETDEEKLFVETGKALLAEGVILRRVGEA ETGKALLAEGVILRRVGEARTQHGGSHVSR K A L R R V 2 2 0 0 0 0 1 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 11 1 1209.7557 Q9Y3D9;J3QLR8 Q9Y3D9 124 134 MRPS23 28S ribosomal protein S23, mitochondrial yes no 3 3.9956E-05 91.584 By MS/MS By matching 1 1 1.1099 1.0575 33.649 2 Median 1.2551 1.3416 NaN 1 0 Median 0.98156 0.83361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8323200 3362300 4961000 6941200 2602800 4338400 1382000 759500 622520 0 0 0 0 0 0 0 0 0 0 0 0 1990 4424 2075 10322;10323 10646 10646 1 ALLAGPLRPAAR ______________________________ LMKALLAGPLRPAARRWRNPIPFPETFDGD K A L A R R 4 2 0 0 0 0 0 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 12 1 1204.7404 Q9BWD3 Q9BWD3 10 21 FAM127B Protein FAM127B yes yes 3 0.0001968 67.726 By MS/MS By MS/MS 1 1 1.116 1.0293 35.292 2 Median 0.80382 0.80199 NaN 1 0 Median 1.5494 1.3211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7705200 3784800 3920400 2513400 1555500 957900 5191800 2229300 2962500 0 0 0 0 0 0 0 0 0 0 0 0 1991 3869 2076 10324;10325 10647;10648;10649 10648 3 ALLALPIRPATR ______________________________ LIKALLALPIRPATRRWRNPIPFPETFDGD K A L T R R 3 2 0 0 0 0 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 12 1 1290.8136 A6ZKI3 A6ZKI3 10 21 FAM127A Protein FAM127A yes yes 2;3 0.00020348 66.435 By MS/MS By MS/MS By matching By matching 2 2 2 2 1.0177 0.90671 26.656 8 Median 0.68457 0.68302 9.1387 2 0 Median 1.3154 1.1216 13.153 2 0 Median 1.0718 1.1639 32.055 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0177 0.87312 2.0783 2 0 Median 43887000 22919000 20967000 23081000 13990000 9090800 18566000 7946300 10620000 1514200 632950 881220 0 0 0 0 0 0 725440 349900 375530 1992 535 2077 10326;10327;10328;10329;10330;10331;10332;10333 10650;10651;10652;10653;10654 10650 5 ALLANALTSALR LPLLGLHEAASFYQRALLANALTSALRLHQ YQRALLANALTSALRLHQRLPHFQLSRAFL R A L L R L 4 1 1 0 0 0 0 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 12 0 1212.719 P57088;D6RAA6 P57088 58 69 TMEM33 Transmembrane protein 33 yes no 2 4.2218E-06 143.96 By MS/MS By MS/MS By MS/MS By matching By matching 5 7 1 1 1 1.3736 1.2305 24.596 15 Median 1.3499 1.299 6.4037 5 0 Median 1.2496 1.0571 20.377 7 0 Median 1.4563 1.3993 NaN 1 0 Median 1.3736 1.1348 NaN 1 0 Median 2.3019 2.2971 NaN 1 0 Median NaN NaN NaN 0 0 Median 185340000 75595000 109740000 110720000 44573000 66146000 56571000 24540000 32031000 11347000 4531200 6816000 1117200 443700 673450 5582000 1507200 4074900 0 0 0 1993 2516 2078 10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348 10655;10656;10657;10658;10659;10660;10661;10662;10663;10664;10665;10666 10662 12 ALLAYAFALAGNQER KSAKEGSQGSHVYTKALLAYAFALAGNQER ALLAYAFALAGNQERRTEVLTSLYEEAVKE K A L E R R 5 1 1 0 0 1 1 1 0 0 3 0 0 1 0 0 0 0 1 0 0 0 15 0 1606.8467 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1152 1166 yes yes 2 3.3021E-07 91.936 By MS/MS By MS/MS 2 1 0.13523 0.1358 47.993 3 Plateau 0.12503 0.12552 11.13 2 2 Median 0.06103 0.055282 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3814200 3412800 401410 2907200 2561300 345860 907030 851490 55545 0 0 0 0 0 0 0 0 0 0 0 0 + 1994 734 2079 10349;10350;10351 10667;10668;10669 10668 3 ALLDASETTSTR NRKVEQLQQEYTEMKALLDASETTSTRKIK EMKALLDASETTSTRKIKEEEKRVNSKFDT K A L T R K 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 3 0 0 0 0 0 12 0 1263.6307 Q14258;A0A3B3IUA7 Q14258 250 261 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 2.8842E-10 150.27 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 1 1.4323 1.2162 13.77 6 Median 1.0332 1.0216 NaN 1 0 Median 1.5131 1.3164 14.21 3 1 Median 1.1007 1.1236 NaN 1 0 Median 1.6199 1.3589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46107000 20143000 25964000 7727500 4297800 3429700 22404000 9001300 13403000 9129200 4139100 4990100 6846200 2704800 4141400 0 0 0 0 0 0 1995 2870 2080 10352;10353;10354;10355;10356;10357;10358;10359;10360;10361 10670;10671;10672;10673;10674;10675;10676;10677;10678;10679;10680;10681 10673 12 ALLDIIR CAKHGIEYQEKPLLRALLDIIRSLKKSGKL YQEKPLLRALLDIIRSLKKSGKLWLDAYLH R A L I R S 1 1 0 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 812.51199 O95864 O95864 422 428 FADS2 Fatty acid desaturase 2 yes yes 2 0.044246 43 By MS/MS By matching 1 1 1.2218 1.1315 33.685 2 Median 0.88456 0.89165 NaN 1 0 Median 1.6875 1.4358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4200000 1781600 2418300 1646200 873630 772520 2553800 908010 1645800 0 0 0 0 0 0 0 0 0 0 0 0 1996 1800 2081 10362;10363 10682 10682 1 ALLDNTKDKNTVVR PLPPLDPQAIKPILKALLDNTKDKNTVVRA KALLDNTKDKNTVVRAYSDQAIVNLLKMRQ K A L V R A 1 1 2 2 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 2 0 0 14 2 1585.8788 Q92616 Q92616 2596 2609 GCN1L1 Translational activator GCN1 yes yes 3 0.017619 23.934 By MS/MS 1 1.0964 1.159 NaN 1 Median 1.0964 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3317700 1410400 1907300 3317700 1410400 1907300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1997 3544 2082 10364 10683;10684 10683 2 ALLDQLMGTAR ______________________________ AQMRALLDQLMGTARDGDETRQRVKFTDDR R A L A R D 2 1 0 1 0 1 0 1 0 0 3 0 1 0 0 0 1 0 0 0 0 0 11 0 1187.6332 Q9NQ29;F8WBC1;F2Z322 Q9NQ29 9 19 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 0.00068187 82.749 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1 1.1825 1.0988 14.343 10 Median 1.0306 1.0119 17.385 2 1 Median 1.0753 0.9248 10.358 2 0 Median 1.2353 1.2462 0.90442 3 1 Plateau 1.2249 1.0551 NaN 1 0 Median 1.1866 1.262 NaN 1 1 Median 1.2081 0.99137 NaN 1 0 Median 54338000 25573000 28764000 11406000 5131400 6274400 10318000 5163500 5154200 13912000 6281000 7630600 12021000 5940900 6080000 3446900 1593500 1853400 3234800 1463200 1771500 1998 4058 2083 10365;10366;10367;10368;10369;10370;10371;10372;10373;10374 10685;10686;10687;10688;10689;10690;10691;10692 10686 8 ALLDSLQLGPDSLTVHLIHEVTK CKRQRSIRPGLSPYRALLDSLQLGPDSLTV GPDSLTVHLIHEVTKVLLVLELQGLQKNMT R A L T K V 1 0 0 2 0 1 1 1 2 1 6 1 0 0 1 2 2 0 0 2 0 0 23 0 2498.3744 Q14697 Q14697 62 84 GANAB Neutral alpha-glucosidase AB yes yes 3 8.0552E-08 45.011 By MS/MS 5 0.98773 0.86249 11.028 5 Median NaN NaN NaN 0 0 Median 0.98773 0.86249 11.028 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13434000 6545600 6888800 0 0 0 13434000 6545600 6888800 0 0 0 0 0 0 0 0 0 0 0 0 1999 2896 2084 10375;10376;10377;10378;10379 10693;10694 10693 2 ALLEAFGTTGFQATNFGR TQVRGYDFNRGVNYRALLEAFGTTGFQATN EAFGTTGFQATNFGRAVQQVNAMIEKKLEP R A L G R A 3 1 1 0 0 1 1 3 0 0 2 0 0 3 0 0 3 0 0 0 0 0 18 0 1899.9479 Q5J8M5;A0A087WZK0;P49366;M0R253;M0QX43;A0A3B3IU31;B4E3M2 Q5J8M5 44 61 DHPS Deoxyhypusine synthase yes no 2 0.042361 21.557 By MS/MS By matching 1 1 1.1904 1.2101 4.5966 2 Median 1.2279 1.2501 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1539 1.1714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787800 784130 1003700 1341700 623080 718570 0 0 0 446160 161050 285110 0 0 0 0 0 0 0 0 0 2000 95 2085 10380;10381 10695 10695 1 ALLEAGALPNAPNSYGR WLATAAARGRVEEVRALLEAGALPNAPNSY LEAGALPNAPNSYGRRPIQVMMMGSARVAE R A L G R R 4 1 2 0 0 0 1 2 0 0 3 0 0 0 2 1 0 0 1 0 0 0 17 0 1712.8846 J3QRG6;P42771 J3QRG6 30 46 CDKN2A Cyclin-dependent kinase inhibitor 2A yes no 2 7.2509E-13 124.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 1 1 1 0.88056 0.80187 31.698 10 Median 0.88937 0.84804 12.792 2 0 Median 0.85254 0.7063 41.775 4 0 Median 0.807 0.81666 NaN 1 0 Median 0.8357 0.65991 NaN 1 0 Median 0.98742 1.0523 NaN 1 0 Median 1.1319 0.89182 NaN 1 0 Median 158860000 85198000 73666000 125430000 66659000 58774000 14672000 8802300 5869400 16799000 8763000 8036200 726090 377710 348380 1097600 529050 568570 135890 66318 69570 2001 1350 2086 10382;10383;10384;10385;10386;10387;10388;10389;10390;10391 10696;10697;10698;10699;10700;10701;10702;10703;10704;10705 10701 10 ALLEEVK KNPEKEPYKSKYSARALLEEVKALLGPAPE YKSKYSARALLEEVKALLGPAPEDEDERPE R A L V K A 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 800.46437 A0A1B0GUA3;Q96EK5;A0A1B0GUH6;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GU96;A0A1B0GVY9 A0A1B0GUA3 41 47 KIAA1279;KIF1BP KIF1-binding protein yes no 2 0.013989 75.311 By MS/MS By MS/MS By matching By matching 1 2 2 1 0.96156 1.0002 16.722 6 Median 1.153 1.1042 NaN 1 0 Median 1.1096 0.97182 33.241 2 0 Median 0.94031 0.94724 11.291 2 0 Median NaN NaN NaN 0 0 Median 0.95685 0.97516 NaN 1 0 Median NaN NaN NaN 0 0 Median 16032000 7784700 8247400 3754800 1748700 2006200 4692900 2394000 2298900 5390700 2516300 2874300 0 0 0 2193800 1125700 1068100 0 0 0 2002 323 2087 10392;10393;10394;10395;10396;10397 10706;10707 10707 2 ALLEEYNK IQQQDQCVEITEESKALLEEYNKTTMLLSK EITEESKALLEEYNKTTMLLSKQFVQWDEL K A L N K T 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 978.50221 O75935;X6RCK5 O75935 149 156 DCTN3 Dynactin subunit 3 yes no 2 0.0075282 66.682 By matching By MS/MS By MS/MS 1 1 1 1.0055 0.86437 34.268 3 Median 1.066 0.99315 NaN 1 0 Median 1.0055 0.86437 NaN 1 1 Median 0.55055 0.51812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18152000 9545600 8606200 8513500 4231700 4281800 3055700 1455800 1599900 6582500 3858000 2724500 0 0 0 0 0 0 0 0 0 2003 1708 2088 10398;10399;10400 10708;10709 10708 2 ALLEKPGELSLLSYIRPDVK KAQRARQLGLEGAARALLEKPGELSLLSYI PGELSLLSYIRPDVKGLSTLQDIEIGVQHI R A L V K G 1 1 0 1 0 0 2 1 0 1 5 2 0 0 2 2 0 0 1 1 0 0 20 2 2240.278 Q8N5C6 Q8N5C6 338 357 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 0.016368 18.784 By matching By MS/MS 1 1 0.90059 0.95687 22.606 2 Median NaN NaN NaN 0 0 Median 1.1333 1.1227 NaN 1 0 Median 0.71569 0.81551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2155700 1188300 967440 0 0 0 268760 122860 145900 1887000 1065400 821540 0 0 0 0 0 0 0 0 0 2004 3377 2089 10401;10402 10710;10711 10711 2 ALLELQLEPEELYQTFQR AERIKPVLMMNKMDRALLELQLEPEELYQT ELQLEPEELYQTFQRIVENVNVIISTYGEG R A L Q R I 1 1 0 0 0 3 4 0 0 0 5 0 0 1 1 0 1 0 1 0 0 0 18 0 2219.1474 P13639 P13639 163 180 EEF2 Elongation factor 2 yes yes 2;3 1.2616E-108 272.59 By MS/MS By MS/MS 3 4 0.96547 0.90797 22.369 7 Median 1.0105 1.0162 10.199 3 0 Median 0.86012 0.75822 17.136 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51955000 27603000 24352000 2658300 1346800 1311500 49297000 26256000 23040000 0 0 0 0 0 0 0 0 0 0 0 0 2005 1992 2090 10403;10404;10405;10406;10407;10408;10409 10712;10713;10714;10715;10716;10717;10718 10718 7 ALLELVPWR MEHRLVLDTVNEVSRALLELVPWRAREGLD VNEVSRALLELVPWRAREGLDKLVSDANEQ R A L W R A 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 1 0 1 0 0 9 0 1095.6441 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5732 5740 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0016555 79.116 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.98958 0.9548 19.508 5 Median 0.87499 0.86655 8.876 2 0 Median 1.123 0.9548 NaN 1 0 Median 0.98958 1.0919 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3416 1.3593 NaN 1 0 Median NaN NaN NaN 0 0 Median 15348000 7703600 7644000 9123800 4784800 4339100 3145600 1474400 1671200 2673700 1278800 1394800 0 0 0 404460 165650 238810 0 0 0 2006 1220 2091 10410;10411;10412;10413;10414 10719;10720;10721;10722 10719 4 ALLEMAEEK KETTMYRSRWESSNKALLEMAEEKTVRDKE WESSNKALLEMAEEKTVRDKELEGLQVKIQ K A L E K T 2 0 0 0 0 0 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1032.5161 P40222 P40222 442 450 TXLNA Alpha-taxilin yes yes 2 0.0027536 71.379 By MS/MS By matching By MS/MS By matching 1 1 4 1 1.16 0.98725 26.417 7 Median 1.2501 1.168 NaN 1 0 Median 1.3166 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1473 0.98565 34.215 4 0 Median NaN NaN NaN 0 0 Median 1.08 0.90285 NaN 1 0 Median 15535000 6373900 9161500 5583800 2114500 3469300 2229200 699560 1529600 0 0 0 7358500 3375600 3982900 0 0 0 363930 184190 179740 2007 2284 2092 10415;10416;10417;10418;10419;10420;10421 10723;10724;10725;10726;10727 10727 4 ALLEVLGR GCGKFYEGTADEMCKALLEVLGRLPPDTRV TADEMCKALLEVLGRLPPDTRVYCGHEYTI K A L G R L 1 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 869.53345 H3BPK3;Q16775;H3BPQ4 H3BPK3 134 141 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 2 0.0040847 83.614 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.0746 1.0208 27.456 7 Median 1.0399 0.97933 5.8632 2 0 Median 1.4608 1.2374 11.183 2 0 Median 0.59981 0.57636 NaN 1 1 Median 1.2812 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94866 0.7887 NaN 1 0 Median 41470000 20778000 20692000 29518000 14421000 15097000 3677700 1493600 2184000 7746900 4624300 3122600 424610 176140 248470 0 0 0 103180 62378 40801 2008 1224 2093 10422;10423;10424;10425;10426;10427;10428 10728;10729;10730 10728 3 ALLEVVQSGGK EAIETDDLTIKLVIKALLEVVQSGGKNIEL LVIKALLEVVQSGGKNIELAVMRRDQSLKI K A L G K N 1 0 0 0 0 1 1 2 0 0 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1099.6237 O14818;Q8TAA3;A0A087WYS6 O14818 194 204 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.00014501 115.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1 1.1581 1.0644 11.32 9 Median 1.1581 1.0624 8.8744 3 0 Plateau 1.1931 1.0426 13.758 3 0 Median 1.2116 1.1362 NaN 1 0 Median 1.4112 1.1708 NaN 1 0 Median 1.054 1.0726 NaN 1 0 Median NaN NaN NaN 0 0 Median 320890000 145270000 175620000 219230000 101950000 117280000 54586000 23311000 31275000 29004000 12317000 16686000 10084000 4042100 6042200 7985900 3642900 4343000 0 0 0 2009 1497 2094 10429;10430;10431;10432;10433;10434;10435;10436;10437 10731;10732;10733;10734;10735;10736;10737;10738;10739;10740;10741;10742;10743;10744;10745;10746 10734 16 ALLFIPR LAVKHFSVEGQLEFRALLFIPRRAPFDLFE VEGQLEFRALLFIPRRAPFDLFENKKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 828.52216 P08238 P08238 331 337 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.0098565 83.229 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 3 1 5 4 1.1851 1.0874 19.839 24 Median 1.1262 1.1075 13.897 6 0 Median 1.0869 0.96194 8.9648 5 0 Median 1.0692 1.0863 5.1775 3 0 Median 1.1016 0.9493 NaN 1 0 Median 1.5582 1.6288 14.31 5 0 Median 1.2217 1.0359 4.5881 4 0 Median 1239700000 590390000 649330000 259430000 122440000 136990000 951150000 455220000 495930000 15009000 7113500 7895500 3825600 1779100 2046600 8967000 3246900 5720100 1345900 598700 747150 2010 1899 2095 10438;10439;10440;10441;10442;10443;10444;10445;10446;10447;10448;10449;10450;10451;10452;10453;10454;10455;10456;10457;10458;10459;10460;10461 10747;10748;10749;10750;10751;10752;10753;10754;10755;10756;10757;10758;10759;10760;10761;10762;10763;10764;10765;10766;10767;10768;10769;10770;10771 10751 25 ALLFVPR LAVKHFSVEGQLEFRALLFVPRRAPFDLFE VEGQLEFRALLFVPRRAPFDLFENRKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 7 0 814.50651 P07900 P07900 339 345 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.0017395 109.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 7 3 2 5 2 1.1147 1.068 22.453 25 Median 1.1468 1.1058 7.5553 6 0 Median 1.0709 0.92886 17.306 7 0 Median 1.0166 1.068 7.5844 3 0 Median 1.1299 0.98279 9.3194 2 0 Median 1.4522 1.551 9.2366 5 0 Median 1.1106 0.91815 0.61621 2 0 Median 550530000 256120000 294410000 286000000 134010000 151990000 231380000 106800000 124580000 20246000 10124000 10122000 3500300 1684800 1815500 9183400 3407500 5776000 220140 101330 118800 2011 1894 2096 10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481;10482;10483;10484;10485;10486 10772;10773;10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784;10785;10786;10787;10788;10789;10790;10791 10776 20 ALLGAFGR ______________________________ ______________________________ R A L G R W 2 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 803.46537 Q9Y606;F5H1B2 Q9Y606 7 14 PUS1 tRNA pseudouridine synthase A, mitochondrial yes no 2 0.023088 44.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1.169 1.1236 9.2333 9 Median NaN NaN NaN 0 0 Median 1.3724 1.1296 0.75229 2 0 Median 1.0429 1.1376 5.1368 2 0 Median 1.2816 1.1208 13.64 2 0 Median 1.1576 1.1927 NaN 1 0 Median 1.1727 0.96181 0.65614 2 0 Median 76236000 34132000 42104000 0 0 0 22704000 8882400 13821000 28893000 14403000 14490000 4503100 2105500 2397500 9023800 3905600 5118200 11112000 4834700 6277700 2012 4475 2097 10487;10488;10489;10490;10491;10492;10493;10494;10495 10792;10793;10794;10795;10796 10794 5 ALLGPAPEDEDERPEAEDGPGAGDHALGLPAEVVEPEGPVAQR YKSKYSARALLEEVKALLGPAPEDEDERPE LPAEVVEPEGPVAQRAVRLAVIEFHLGVNH K A L Q R A 7 2 0 4 0 1 8 6 1 0 4 0 0 0 7 0 0 0 0 3 0 0 43 1 4356.0782 A0A1B0GUA3;Q96EK5;A0A1B0GUH6;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GU96;A0A1B0GVY9 A0A1B0GUA3 48 90 KIAA1279;KIF1BP KIF1-binding protein yes no 4 0.010414 20.696 By MS/MS 1 0.27858 0.28562 NaN 1 Median 0.27858 0.28562 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4520200 3920500 599720 4520200 3920500 599720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2013 323 2098 10496 10797 10797 1 ALLKDQQPGTFLLR NDGCIMGFISKERERALLKDQQPGTFLLRF RALLKDQQPGTFLLRFSESSREGAITFTWV R A L L R F 1 1 0 1 0 2 0 1 0 0 4 1 0 1 1 0 1 0 0 0 0 0 14 1 1598.9144 P42224;J3KPM9 P42224 589 602 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 3 0.00064999 45.28 By MS/MS By matching 2 1 1.062 1.0895 18.118 3 Median 0.92776 0.96344 17.387 2 0 Median NaN NaN NaN 0 0 Median 1.141 1.2132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9800600 4751300 5049300 8088800 3961400 4127400 0 0 0 1711800 789970 921880 0 0 0 0 0 0 0 0 0 2014 2308 2099 10497;10498;10499 10798;10799 10799 2 ALLLLLVGGVDQSPR ASIAPEIYGHEDVKKALLLLLVGGVDQSPR ALLLLLVGGVDQSPRGMKIRGNINICLMGD K A L P R G 1 1 0 1 0 1 0 2 0 0 5 0 0 0 1 1 0 0 0 2 0 0 15 0 1549.9192 P33993 P33993 353 367 MCM7 DNA replication licensing factor MCM7 yes yes 2 6.0787E-05 83 By MS/MS By MS/MS By matching 1 2 1 0.92582 0.87013 11.984 4 Median 0.83213 0.82492 NaN 1 0 Median 1.0838 0.95123 5.0577 2 0 Median 0.72751 0.75036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8761200 4178800 4582400 1553500 855720 697760 6769100 3076700 3692400 438600 246340 192260 0 0 0 0 0 0 0 0 0 2015 2225 2100 10500;10501;10502;10503 10800;10801;10802;10803 10801 4 ALLLLQR AEKDPDEDCRTLALRALLLLQRLKNRLLPP DCRTLALRALLLLQRLKNRLLPPASP____ R A L Q R L 1 1 0 0 0 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 7 0 825.54362 Q9Y4R8 Q9Y4R8 820 826 TELO2 Telomere length regulation protein TEL2 homolog yes yes 2 0.01617 69.39 By MS/MS By matching By matching By matching 2 2 1 1 1.4166 1.2202 27.05 6 Median 1.0509 1.0083 10.633 2 0 Median 1.4166 1.2202 2.7554 2 0 Median NaN NaN NaN 0 0 Median 1.8652 1.5387 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4736 2.0064 NaN 1 0 Median 17443000 7781000 9662000 10114000 4842700 5271700 4319900 1787100 2532800 0 0 0 820010 342380 477630 0 0 0 2188700 808830 1379900 2016 4447 2101 10504;10505;10506;10507;10508;10509 10804 10804 1 ALLLSHQFK AAVEYYIKHQNRQLRALLLSHQFKRREADQ QNRQLRALLLSHQFKRREADQTHAQNFSSA R A L F K R 1 0 0 0 0 1 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 1055.6128 Q5SNT2;H0Y4R5 Q5SNT2 184 192 TMEM201 Transmembrane protein 201 yes no 2 0.00083372 95.352 By MS/MS By MS/MS By matching 1 1 1 1.3415 1.3447 7.5075 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1656 1.2045 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3415 1.3447 NaN 1 0 Median 1.6942 1.3904 NaN 1 0 Median 36918000 15010000 21908000 0 0 0 0 0 0 12397000 5143400 7254100 0 0 0 21836000 8889700 12946000 2685200 976730 1708500 2017 3073 2102 10510;10511;10512 10805;10806;10807 10805 3 ALLLSHQFKR AAVEYYIKHQNRQLRALLLSHQFKRREADQ NRQLRALLLSHQFKRREADQTHAQNFSSAV R A L K R R 1 1 0 0 0 1 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 10 1 1211.7139 Q5SNT2;H0Y4R5 Q5SNT2 184 193 TMEM201 Transmembrane protein 201 yes no 3 0.0084956 44.863 By MS/MS 2 1.3621 1.4718 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3621 1.4718 NaN 1 1 Median NaN NaN NaN 0 0 Median 2663200 955710 1707500 0 0 0 0 0 0 0 0 0 0 0 0 2663200 955710 1707500 0 0 0 2018 3073 2103 10513;10514 10808;10809 10809 2 ALLLSTYIK SLLHSKFHLCSVATRALLLSTYIKFINLFP CSVATRALLLSTYIKFINLFPETKATIQGV R A L I K F 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 1 1 0 1 0 0 0 9 0 1020.6219 O94973;A0A0G2JS82;A0A0G2JQM1;O95782 O95782 539 547 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 0.0022552 73.26 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 1 2 1 1 1.2823 1.2194 19.919 10 Median 1.1408 1.1375 18.839 2 0 Median 1.2888 1.1478 3.8065 3 0 Median 1.1643 1.2803 NaN 1 0 Median 1.1831 1.0225 30.268 2 0 Median 1.4378 1.4772 NaN 1 0 Median 1.9732 1.6819 NaN 1 0 Median 18246000 8266000 9979800 5427100 2571100 2856000 6573200 2825000 3748300 3633900 1640300 1993600 816190 398490 417690 1398300 690640 707620 397120 140470 256650 2019 1793;1741 2104 10515;10516;10517;10518;10519;10520;10521;10522;10523;10524 10810;10811;10812;10813;10814 10811 5 ALLLTGDFSQAGNK MRTESNLGAKVFFFKALLLTGDFSQAGNKG KALLLTGDFSQAGNKGHHVWVTKDELGDYL K A L N K G 2 0 1 1 0 1 0 2 0 0 3 1 0 1 0 1 1 0 0 0 0 0 14 0 1433.7514 Q9H2W6 Q9H2W6 236 249 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 1.895E-08 145.34 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 1 1 1 1 1 1.3062 1.1286 12.208 8 Median 1.1587 1.0745 15.541 3 0 Median 1.4002 1.1853 NaN 1 0 Median 1.116 1.0459 NaN 1 0 Median 1.5327 1.2681 NaN 1 0 Median 1.3039 1.3338 NaN 1 1 Median 1.3084 1.0314 NaN 1 0 Median 66491000 31856000 34635000 34492000 17143000 17349000 2397800 1011300 1386500 11148000 4944900 6202600 1610400 617610 992770 2631300 1107000 1524300 14212000 7032000 7179900 2020 3948 2105 10525;10526;10527;10528;10529;10530;10531;10532 10815;10816;10817;10818;10819;10820;10821;10822 10815 8 ALLNHLDVGVGR HRYGEGDSLTLQQLKALLNHLDVGVGRGNV QLKALLNHLDVGVGRGNVTQHVQGHRNLS_ K A L G R G 1 1 1 1 0 0 0 2 1 0 3 0 0 0 0 0 0 0 0 2 0 0 12 0 1262.7095 E5RFZ8;E5RGA7;E5RJ40;E5RJG5;E5RIP4;Q15043 E5RFZ8 64 75 SLC39A14 Zinc transporter ZIP14 yes no 3 0.0010243 47.915 By MS/MS By MS/MS 1 2 1.4103 1.3703 22.666 3 Median 1.4103 1.3822 NaN 1 1 Median 1.3722 1.1286 27.451 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27513000 11698000 15815000 11297000 4455900 6841400 16215000 7241600 8973600 0 0 0 0 0 0 0 0 0 0 0 0 2021 837 2106 10533;10534;10535 10823;10824;10825;10826;10827 10825 5 ALLNLPGTQTSGEAK EDKRRRRRRREKRKRALLNLPGTQTSGEAK ALLNLPGTQTSGEAKDGPPKKQVCGDSIKP R A L A K D 2 0 1 0 0 1 1 2 0 0 3 1 0 0 1 1 2 0 0 0 0 0 15 0 1498.7991 Q96GM8 Q96GM8 348 362 TOE1 Target of EGR1 protein 1 yes yes 2 3.3831E-09 98.353 By matching By MS/MS By MS/MS 2 1 2 0.87845 0.86003 17.016 5 Median NaN NaN NaN 0 0 Median 0.76583 0.71093 27.866 2 0 Median 0.87845 0.8613 NaN 1 0 Median 0.93255 0.80189 9.8991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11385000 6023700 5360900 0 0 0 774880 448300 326580 8901900 4611500 4290300 1707800 963840 743990 0 0 0 0 0 0 2022 3660 2107 10536;10537;10538;10539;10540 10828;10829;10830 10828 3 ALLNNSHYYHMAHGK GGYVAAIKAAQLGFKALLNNSHYYHMAHGK ALLNNSHYYHMAHGKDFASRGIEMSEVRLN K A L G K D 2 0 2 0 0 0 0 1 3 0 2 1 1 0 0 1 0 0 2 0 0 0 15 0 1754.8311 E9PEX6;P09622;F8WDM5;A0A1W2PR83;F2Z2E3 E9PEX6 67 81 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 3;4 1.2483E-06 87.18 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.4121 1.2301 15.982 6 Median 1.014 0.94003 NaN 1 0 Median 1.4121 1.2021 7.7713 2 0 Median 1.1981 1.1915 NaN 1 0 Median 1.6551 1.428 5.6164 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27726000 11798000 15928000 12120000 5490900 6629200 9769600 3869300 5900300 2659700 1338500 1321200 3176500 1099500 2077000 0 0 0 0 0 0 2023 915 2108 10541;10542;10543;10544;10545;10546 10831;10832;10833;10834;10835;10836;10837;10838;10839 10836 9 ALLPHVLCK LGVAFWISKDSLADRALLPHVLCKNCVVEL DSLADRALLPHVLCKNCVVELNFGQKEEPF R A L C K N 1 0 0 0 1 0 0 0 1 0 3 1 0 0 1 0 0 0 0 1 0 0 9 0 1049.6056 Q1KMD3;H3BQZ7 Q1KMD3 398 406 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0059661 56.011 By MS/MS 1 0.52921 0.54525 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52921 0.54525 NaN 1 0 Median NaN NaN NaN 0 0 Median 5838400 4194800 1643600 0 0 0 0 0 0 0 0 0 0 0 0 5838400 4194800 1643600 0 0 0 2024 3002 2109 10547 10840 10840 1 ALLPSMIK RVMETNYFGPVALTKALLPSMIKRRQGHIV GPVALTKALLPSMIKRRQGHIVAISSIQGK K A L I K R 1 0 0 0 0 0 0 0 0 1 2 1 1 0 1 1 0 0 0 0 0 0 8 0 871.52011 A0A0C4DGQ8;Q6IAN0;J3KRS1 A0A0C4DGQ8 161 168 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 2 0.015483 50.127 By MS/MS By matching 1 1 0.99669 0.89616 4.7839 2 Median 0.90964 0.86635 NaN 1 0 Median 1.0921 0.927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5873700 3076400 2797300 5296100 2797500 2498600 577640 278920 298720 0 0 0 0 0 0 0 0 0 0 0 0 2025 252 2110 10548;10549 10841;10842 10841 2 ALLQAILQTEDMLK NGVTDGYLNSLCTVRALLQAILQTEDMLKV RALLQAILQTEDMLKVYEARLTEEETVCLD R A L L K V 2 0 0 1 0 2 1 0 0 1 4 1 1 0 0 0 1 0 0 0 0 0 14 0 1585.8749 P15924 P15924 772 785 DSP Desmoplakin yes yes 2 2.1607E-05 129.89 By MS/MS By MS/MS By MS/MS 1 1 3 0.7854 0.73321 48.098 4 Median 0.67041 0.66272 NaN 1 0 Median 0.9201 0.8112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63131 0.53746 75.969 2 1 Median 14090000 8269000 5820600 2226800 1306100 920730 9445900 4853000 4593000 0 0 0 0 0 0 0 0 0 2416800 2109900 306870 2026 2021 2111;2112 10550;10551;10552;10553;10554 10843;10844;10845;10846 10844 806 4 ALLQEFDNAVLSK QMMIDEFNKQSNAFKALLQEFDNAVLSKEN FKALLQEFDNAVLSKENHMQGKLNEKEKMI K A L S K E 2 0 1 1 0 1 1 0 0 0 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1446.7718 A0A2U3TZL8;H7BYN4;Q02241 A0A2U3TZL8 538 550 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.0029978 62.303 By MS/MS 1 1.1774 1.2984 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1774 1.2984 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4276400 1938200 2338300 0 0 0 0 0 0 4276400 1938200 2338300 0 0 0 0 0 0 0 0 0 2027 407 2113 10555 10847 10847 1 ALLQEMPLTALLR EHLLTNHLKSKEVWKALLQEMPLTALLRNL WKALLQEMPLTALLRNLGKMTANSVLEPGN K A L L R N 2 1 0 0 0 1 1 0 0 0 5 0 1 0 1 0 1 0 0 0 0 0 13 0 1467.8483 P10155 P10155 271 283 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 3.8547E-07 110.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 0.8543 0.83209 36.722 8 Median 0.78825 0.78522 0.98449 2 0 Median 1.0508 0.88181 57.099 3 0 Median 0.82978 0.87564 NaN 1 0 Median 1.1223 0.96172 NaN 1 0 Median 0.6852 0.68923 NaN 1 0 Median NaN NaN NaN 0 0 Median 39673000 19764000 19909000 5919900 3263400 2656500 26869000 12981000 13887000 1091300 584430 506910 5533500 2774600 2758900 259840 160000 99842 0 0 0 2028 1934 2114;2115 10556;10557;10558;10559;10560;10561;10562;10563 10848;10849;10850;10851;10852;10853;10854;10855;10856;10857 10853 716 10 ALLQMAEEK KETIIWRTKWENNNKALLQMAEEKTVRDKE WENNNKALLQMAEEKTVRDKEYKALQIKLE K A L E K T 2 0 0 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1031.5321 Q9NUQ3 Q9NUQ3 409 417 TXLNG Gamma-taxilin yes yes 2 0.024003 53.166 By MS/MS 1 1.2255 1.0475 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2255 1.0475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1541800 718120 823700 0 0 0 0 0 0 0 0 0 1541800 718120 823700 0 0 0 0 0 0 2029 4118 2116 10564 10858 10858 1 ALLQMVQQFGVDFEK EYKNFRPDDPTRKTKALLQMVQQFGVDFEK ALLQMVQQFGVDFEKRIEGSGDQVDTLELS K A L E K R 1 0 0 1 0 3 1 1 0 0 2 1 1 2 0 0 0 0 0 2 0 0 15 0 1751.8916 P50570 P50570 328 342 DNM2 Dynamin-2 no no 2 6.3703E-06 79.693 By MS/MS 1 1.1609 1.0431 NaN 1 Median NaN NaN NaN 0 0 Median 1.1609 1.0431 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 952700 461030 491660 0 0 0 952700 461030 491660 0 0 0 0 0 0 0 0 0 0 0 0 2030 2417 2117 10565 10859 10859 1 ALLQQQPEDDSKR TAIKRNENMAKGLQRALLQQQPEDDSKRSP QRALLQQQPEDDSKRSPRPQDLIRLYDIIL R A L K R S 1 1 0 2 0 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 13 1 1526.7689 Q9UHB9 Q9UHB9 405 417 SRP68 Signal recognition particle subunit SRP68 yes yes 3 6.539E-06 93.011 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.0362 1.0368 11.027 6 Median 1.0039 1.0162 12.629 2 0 Median 1.1288 1.0311 NaN 1 0 Median 0.98222 1.0425 NaN 1 0 Median 0.90357 0.82848 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1792 1.0824 NaN 1 0 Median 19089000 8749100 10340000 4479600 2357200 2122400 6825400 3050100 3775300 6059200 2476600 3582600 963890 516130 447750 0 0 0 760670 349020 411650 2031 4274 2118 10566;10567;10568;10569;10570;10571 10860;10861;10862;10863;10864;10865;10866 10863 6 ALLQSSASR DLYKSEMEVQDAELKALLQSSASRKTQKKK QDAELKALLQSSASRKTQKKKKKKASKTAE K A L S R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 0 931.50869 Q9UQ80 Q9UQ80 356 364 PA2G4 Proliferation-associated protein 2G4 yes yes 2 6.0321E-07 162.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 1.0763 0.99611 13.397 8 Median 1.2661 1.2233 NaN 1 1 Median 1.0403 0.8902 16.2 2 0 Median 0.99694 1.0285 4.8318 2 0 Median 1.0879 0.93615 9.2051 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90360000 44134000 46227000 7880000 3775400 4104600 38783000 19714000 19069000 23148000 11464000 11685000 20549000 9180600 11368000 0 0 0 0 0 0 2032 4360 2119 10572;10573;10574;10575;10576;10577;10578;10579;10580;10581 10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886 10875 20 ALLQTHPEAQR CVMSLGVPGPATLAKALLQTHPEAQRAI__ TLAKALLQTHPEAQRAI_____________ K A L Q R A 2 1 0 0 0 2 1 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 11 0 1262.6731 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 79 89 FLYWCH2 FLYWCH family member 2 yes no 2;3 0.00042523 69.954 By MS/MS By MS/MS By MS/MS 1 2 1 0.70982 0.67543 60.803 4 Median 0.22668 0.21427 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70982 0.67543 7.0159 2 0 Median 0.96561 0.79703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14925000 10676000 4248800 6452900 5568300 884650 0 0 0 7551500 4685200 2866300 920520 422670 497850 0 0 0 0 0 0 2033 1280 2120 10582;10583;10584;10585 10887;10888;10889;10890;10891;10892;10893 10891 7 ALLSALELK EQLNDKLSKTEKESKALLSALELKKKEYEE TEKESKALLSALELKKKEYEELKEEKTLFS K A L L K K 2 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 956.59063 P49454 P49454 597 605 CENPF Centromere protein F yes yes 2 0.0028118 69.423 By MS/MS By matching 1 1 1.262 1.2534 2.1631 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1898 1.2728 NaN 1 0 Median 1.3386 1.2344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9905500 4500600 5404900 0 0 0 0 0 0 9661600 4373900 5287700 243900 126730 117170 0 0 0 0 0 0 2034 2383 2121 10586;10587 10894;10895 10894 2 ALLSAPWYLNR NYMKELELVTKAGFRALLSAPWYLNRISYG AGFRALLSAPWYLNRISYGPDWKDFYIVEP R A L N R I 2 1 1 0 0 0 0 0 0 0 3 0 0 0 1 1 0 1 1 0 0 0 11 0 1302.7085 H3BS10;H3BP20;P06865 H3BS10 414 424 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.0086798 40.045 By MS/MS By matching By matching 2 1 2 0.90116 0.83253 33.791 5 Median 0.89914 0.89187 9.736 2 0 Median 0.90116 0.79616 NaN 1 0 Median 0.85907 0.8691 66.22 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12291000 7260500 5030700 10204000 6082600 4121300 528130 288400 239730 1559200 889570 669670 0 0 0 0 0 0 0 0 0 2035 1218 2122 10588;10589;10590;10591;10592 10896;10897 10897 2 ALLSASPEVVVAVGFPGAGK RTVSRSGPLCLPESRALLSASPEVVVAVGF SPEVVVAVGFPGAGKSTFLKKHLVSAGYVH R A L G K S 4 0 0 0 0 0 1 3 0 0 2 1 0 1 2 2 0 0 0 4 0 0 20 0 1868.0407 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;A0A0D9SFD6 M0QYH2 328 347 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 7.542E-08 62.14 By MS/MS By matching 1 1 0.8902 0.81868 60.667 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54082 0.5331 NaN 1 0 Median 1.4653 1.2572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11857000 7287000 4569800 0 0 0 0 0 0 7822100 5012200 2810000 4034700 2274900 1759800 0 0 0 0 0 0 2036 1418 2123 10593;10594 10898 10898 1 ALLSAVTR PCSSVKRGNMVRAARALLSAVTRLLILADM NMVRAARALLSAVTRLLILADMADVYKLLV R A L T R L 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 8 0 829.50215 P35221;G3XAM7;E5RIB1;E5RG03;E5RJ41;E5RGY6;P26232 P35221 130 137 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 no no 2 0.004801 79.469 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1.1899 1.0319 13.395 6 Median 0.99549 0.97725 NaN 1 0 Median 1.407 1.2137 12.664 2 0 Median 0.87213 0.92955 NaN 1 0 Median 1.1899 1.0163 9.856 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15629000 7356900 8272200 2465100 1091100 1374000 4276400 1738100 2538300 5999800 3194800 2805000 2887700 1332800 1554900 0 0 0 0 0 0 2037 2232;2141 2124 10595;10596;10597;10598;10599;10600 10899;10900;10901;10902;10903 10901 5 ALLSDMVR EREQHKREEAIQNFKALLSDMVRSSDVSWS EAIQNFKALLSDMVRSSDVSWSDTRRTLRK K A L V R S 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 8 0 903.48479 O14776;G3V220 O14776 905 912 TCERG1 Transcription elongation regulator 1 yes no 2 0.0025057 122.79 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.2093 1.1095 4.491 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0448 1.1483 NaN 1 0 Median 1.2352 1.0652 5.0508 2 0 Median 1.091 1.1461 NaN 1 0 Median 1.3503 1.1095 NaN 1 0 Median 37007000 16751000 20256000 0 0 0 0 0 0 28766000 13039000 15727000 4320800 1919500 2401400 3237500 1524900 1712600 682150 266860 415290 2038 1494 2125 10601;10602;10603;10604;10605 10904;10905;10906;10907 10905 4 ALLSHDSGSDHLAFVR FSSSLQNRAEVDKVKALLSHDSGSDHLAFV LLSHDSGSDHLAFVRAVAGWEEVLRWQDRS K A L V R A 2 1 0 2 0 0 0 1 2 0 3 0 0 1 0 3 0 0 0 1 0 0 16 0 1723.8642 H7BXY3;Q7L2E3 H7BXY3 898 913 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 4 0.00013526 45.864 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.0013 0.96766 11.224 5 Median 1.0013 0.96956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87333 0.96048 NaN 1 0 Median 1.1359 0.96766 NaN 1 0 Median 1.0284 1.0791 18.865 2 0 Median NaN NaN NaN 0 0 Median 19701000 10251000 9449700 3717600 2025900 1691700 0 0 0 7311100 4207200 3103800 1656800 819730 837080 7015600 3198500 3817100 0 0 0 2039 1244 2126 10606;10607;10608;10609;10610 10908;10909;10910;10911 10908 4 ALLSHQDKLR LRCQQLKLYILKAGRALLSHQDKLRQILSQ LKAGRALLSHQDKLRQILSQPAVQETGTVH R A L L R Q 1 1 0 1 0 1 0 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 10 1 1179.6724 O95714 O95714 2331 2340 HERC2 E3 ubiquitin-protein ligase HERC2 yes yes 3 0.051204 27.481 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 185350 0 185350 185350 0 185350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2040 1786 2127 10611 10912 10912 1 ALLTDKESLK RDFQEYLAAVESSMKALLTDKESLKVGPLD ESSMKALLTDKESLKVGPLDSVTYLDKIKK K A L L K V 1 0 0 1 0 0 1 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 10 1 1116.639 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2538 2547 SYNE2 Nesprin-2 yes no 2 0.0018714 78.334 By MS/MS By matching 1 1 1.1339 1.142 4.2411 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97497 1.1082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3186 1.1767 NaN 1 0 Median 5186600 1867600 3319000 0 0 0 0 0 0 2995000 1090500 1904500 0 0 0 0 0 0 2191600 777080 1414500 2041 3521 2128 10612;10613 10913 10913 1 ALLTLADGR LGDDISSETSGDFRKALLTLADGRRDESLK SGDFRKALLTLADGRRDESLKVDEHLAKQD K A L G R R 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 928.53418 P12429;D6RA82 P12429 155 163 ANXA3 Annexin A3;Annexin yes no 2 0.00056885 113.5 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1.4242 1.2479 39.329 6 Median 1.411 1.3199 NaN 1 0 Median 1.0483 0.87243 NaN 1 0 Median 1.5269 1.4655 NaN 1 0 Median 1.1009 0.95569 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2043 1.7612 56.645 2 0 Median 18977000 8902100 10075000 11007000 5213800 5792700 6196900 2957000 3240000 864990 345330 519670 417200 228700 188490 0 0 0 491640 157340 334300 2042 1981 2129 10614;10615;10616;10617;10618;10619 10914;10915;10916;10917 10914 4 ALLTLADGRR LGDDISSETSGDFRKALLTLADGRRDESLK GDFRKALLTLADGRRDESLKVDEHLAKQDA K A L R R D 2 2 0 1 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 10 1 1084.6353 P12429;D6RA82 P12429 155 164 ANXA3 Annexin A3;Annexin yes no 2 0.0015025 68.915 By MS/MS By MS/MS 1 1 1.1489 1.1436 9.9007 2 Median 1.1393 1.2266 NaN 1 0 Median 1.1585 1.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14909000 7002400 7906800 11041000 5146200 5894400 3868500 1856200 2012300 0 0 0 0 0 0 0 0 0 0 0 0 2043 1981 2130 10620;10621 10918;10919;10920 10920 3 ALLTPVAIAAGR TNVKGIYAVGDVCGKALLTPVAIAAGRKLA CGKALLTPVAIAAGRKLAHRLFEYKEDSKL K A L G R K 4 1 0 0 0 0 0 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 12 0 1151.7026 P00390 P00390 380 391 GSR Glutathione reductase, mitochondrial yes yes 2 3.3145E-05 96.331 By MS/MS By matching By MS/MS By matching 3 2 2 1 0.92496 0.94624 13.457 8 Median 0.94003 0.94652 8.8236 3 0 Median 0.90137 0.79057 25.379 2 0 Median 0.85492 0.87957 11.804 2 0 Median 1.0892 0.95296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38284000 19949000 18335000 30965000 16160000 14805000 2518900 1249000 1270000 4488900 2402000 2086900 311200 138030 173170 0 0 0 0 0 0 2044 1817 2131 10622;10623;10624;10625;10626;10627;10628;10629 10921;10922;10923;10924;10925 10922 5 ALLTTNQLPQPDVFPLFK ALWDQLLEGRIKLQKALLTTNQLPQPDVFP TTNQLPQPDVFPLFKDKGGPEFSSALKNSH K A L F K D 1 0 1 1 0 2 0 0 0 0 4 1 0 2 3 0 2 0 0 1 0 0 18 0 2041.1248 Q9NY61 Q9NY61 247 264 AATF Protein AATF yes yes 2;3 0.0039894 28.806 By MS/MS By matching 2 1 0.83468 0.73462 11.201 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74556 0.76799 15.42 2 1 Median 0.85074 0.73462 NaN 1 0 Median 5473900 3204600 2269400 0 0 0 0 0 0 0 0 0 0 0 0 5404100 3164800 2239300 69793 39743 30049 2045 4172 2132 10630;10631;10632 10926;10927;10928 10927 3 ALLVEPVINSYLLAER KYRDCLTESNLIKVRALLVEPVINSYLLAE LLVEPVINSYLLAERDLYLENPEIKIRILG R A L E R D 2 1 1 0 0 0 2 0 0 1 4 0 0 0 1 1 0 0 1 2 0 0 16 0 1799.0193 P21980 P21980 565 580 TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes yes 2 0.0060926 32.008 By MS/MS By matching 1 1 0.96214 0.9174 31.787 2 Median 0.73401 0.73273 NaN 1 0 Median 1.2612 1.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1379900 674830 705040 647400 346850 300560 732470 327980 404490 0 0 0 0 0 0 0 0 0 0 0 0 2046 2094 2133 10633;10634 10929 10929 1 ALLVEVQLLESK LGSQLLRELKKMDDKALLVEVQLLESKTYH DDKALLVEVQLLESKTYHALSNLPKARAAL K A L S K T 1 0 0 0 0 1 2 0 0 0 4 1 0 0 0 1 0 0 0 2 0 0 12 0 1340.7915 O00231 O00231 164 175 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.0076442 38.303 By MS/MS By matching 2 1 1.4571 1.2542 17.079 3 Plateau NaN NaN NaN 0 0 Median 1.2823 1.117 16.384 2 0 Median NaN NaN NaN 0 0 Median 1.0075 0.89881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589900 2264600 2325300 0 0 0 3879400 1973200 1906200 0 0 0 710480 291430 419050 0 0 0 0 0 0 2047 1448 2134 10635;10636;10637 10930 10930 1 ALLVHDLQK ARRQVRMQALTYLQRALLVHDLQKLDALEW LTYLQRALLVHDLQKLDALEWESCFNKVLF R A L Q K L 1 0 0 1 0 1 0 0 1 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1035.6077 Q92538 Q92538 1571 1579 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.039665 52.716 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2048 3533 2135 10638 10931 10931 1 ALLVQVVNK TVAHELLCNKPEEEKALLVQVVNKLGDPQN KPEEEKALLVQVVNKLGDPQNRIATKASHL K A L N K L 1 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 9 0 982.61752 Q03701 Q03701 382 390 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.0011922 84.244 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1.5048 1.3161 6.5441 10 Median NaN NaN NaN 0 0 Median 1.6457 1.4443 NaN 1 0 Median 1.2385 1.3047 7.4431 2 0 Median 1.633 1.4105 8.362 2 0 Median 1.2379 1.2802 5.3249 2 0 Median 1.5064 1.2939 2.6166 3 0 Median 48117000 20638000 27478000 0 0 0 1535500 578130 957330 20224000 8699800 11524000 1747400 633550 1113800 18548000 8249000 10299000 6061800 2477900 3583900 2049 2710 2136 10639;10640;10641;10642;10643;10644;10645;10646;10647;10648 10932;10933;10934;10935;10936;10937;10938 10932 7 ALLVSANQTLK VIRRSMRHRKVRGEKALLVSANQTLKELKI RGEKALLVSANQTLKELKIQIMHAFSVAPF K A L L K E 2 0 1 0 0 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 11 0 1156.6816 Q86UV5 Q86UV5 946 956 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2 0.0001236 120.12 By matching By matching By MS/MS By MS/MS By matching 1 1 3 1 1 1.1703 1.1193 23.182 7 Median 0.74165 0.77127 NaN 1 0 Median 1.3144 1.2261 NaN 1 0 Median 1.0525 1.1193 18.022 3 0 Median 1.1703 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8158 1.5139 NaN 1 0 Median 108250000 56117000 52129000 44139000 23666000 20473000 2454300 950400 1503900 44599000 23242000 21357000 16325000 7960100 8365200 0 0 0 728930 298580 430350 2050 3281 2137 10649;10650;10651;10652;10653;10654;10655 10939;10940;10941;10942 10939 4 ALLVTASQCQQPAENK QKHAEMVHTGLKLERALLVTASQCQQPAEN LLVTASQCQQPAENKLSDLLAPISEQIKEV R A L N K L 3 0 1 0 1 3 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 16 0 1756.8778 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 85 100 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2;3 1.8388E-08 149.96 By MS/MS By MS/MS 1 2 1.0535 0.98428 9.7452 3 Median 1.0535 0.98428 NaN 1 0 Median 1.0917 0.92761 12.903 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26617000 12754000 13863000 8263500 3744400 4519100 18353000 9009200 9344100 0 0 0 0 0 0 0 0 0 0 0 0 2051 2686 2138 10656;10657;10658 10943;10944;10945;10946;10947;10948 10945 6 ALLYTAVNQLAMGSSSAEDEKNTALK AGNVAHILDSNHGKKALLYTAVNQLAMGSS MGSSSAEDEKNTALKTIQKAALLSPGDPAI K A L L K T 5 0 2 1 0 1 2 1 0 0 4 2 1 0 0 3 2 0 1 1 0 0 26 1 2724.364 Q6PGP7 Q6PGP7 1232 1257 TTC37 Tetratricopeptide repeat protein 37 yes yes 3 4.5643E-13 53.865 By MS/MS By matching 1 1 0.81185 0.78867 22.023 2 Median 0.95241 0.92157 NaN 1 0 Median 0.69204 0.67494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11182000 5825700 5356300 10195000 5233400 4961400 987340 592370 394970 0 0 0 0 0 0 0 0 0 0 0 0 2052 3169 2139 10659;10660 10949;10950 10950 2 ALMAPNLDSFGR DIKDESSEFSSHSNKALMAPNLDSFGRDRA SNKALMAPNLDSFGRDRALYQEHAKRRIAE K A L G R D 2 1 1 1 0 0 0 1 0 0 2 0 1 1 1 1 0 0 0 0 0 0 12 0 1290.6391 Q9Y5B6 Q9Y5B6 505 516 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 0.0038247 55.567 By MS/MS By MS/MS 1 1 0.82505 0.88606 5.6133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84458 0.92194 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80597 0.85158 NaN 1 0 Median NaN NaN NaN 0 0 Median 5387400 2818000 2569400 0 0 0 0 0 0 1973600 1024500 949150 0 0 0 3413700 1793500 1620300 0 0 0 2053 4455 2140 10661;10662 10951;10952;10953 10951 2 ALMDEVVK PVGVFEWEAFARGTKALMDEVVKATSRGCI AFARGTKALMDEVVKATSRGCITIIGGGDT K A L V K A 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 8 0 903.47355 P00558 P00558 354 361 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.0078694 65.252 By MS/MS By MS/MS By MS/MS By MS/MS 7 4 3 2 1.152 1.0817 20.801 16 Median 1.1484 1.077 14.518 7 0 Median 1.3977 1.1717 7.2675 4 0 Median 1.0741 1.1093 39.595 3 1 Median 1.1086 0.93135 19.681 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 421070000 192060000 229020000 269860000 120900000 148960000 94573000 40220000 54353000 54459000 30031000 24429000 2180100 907490 1272700 0 0 0 0 0 0 2054 1824 2141;2142 10663;10664;10665;10666;10667;10668;10669;10670;10671;10672;10673;10674;10675;10676;10677;10678 10954;10955;10956;10957;10958;10959;10960;10961;10962;10963;10964;10965;10966;10967;10968;10969;10970;10971;10972;10973 10957 592 20 ALMDLLQLTR HTMLGSPEQPGVIPRALMDLLQLTREEGAE GVIPRALMDLLQLTREEGAEGRPWALSVTM R A L T R E 1 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 1 0 0 0 0 0 10 0 1172.6587 Q14807;H3BRB3;H3BTH5 Q14807 150 159 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.019982 37.191 By MS/MS By matching By matching 1 1 2 1.2357 1.1865 11.664 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0619 1.1256 NaN 1 0 Median 1.2341 1.0775 NaN 1 0 Median 1.3122 1.3228 7.9273 2 0 Median NaN NaN NaN 0 0 Median 3631400 1745100 1886300 0 0 0 0 0 0 3230100 1553300 1676800 75000 36553 38448 326250 155210 171040 0 0 0 2055 1228 2143 10679;10680;10681;10682 10974;10975 10975 2 ALMDNPTLYLEK QNNLALLIYLMRMVKALMDNPTLYLEKYVH MVKALMDNPTLYLEKYVHELIPAVMTCIVS K A L E K Y 1 0 1 1 0 0 1 0 0 0 3 1 1 0 1 0 1 0 1 0 0 0 12 0 1406.7116 J3KR72;P49848 J3KR72 345 356 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 0.001303 54.608 By MS/MS By matching 1 1 0.73756 0.78215 14.507 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66346 0.7059 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81994 0.86664 NaN 1 0 Median NaN NaN NaN 0 0 Median 3272400 1707800 1564700 0 0 0 0 0 0 3084700 1601700 1482900 0 0 0 187790 106050 81734 0 0 0 2056 1323 2144 10683;10684 10976 10976 1 ALMDSLGPEWR DNVTSAVEGINRMTRALMDSLGPEWRLKLP RMTRALMDSLGPEWRLKLPSIPLVPVSAQK R A L W R L 1 1 0 1 0 0 1 1 0 0 2 0 1 0 1 1 0 1 0 0 0 0 11 0 1273.6125 Q15785 Q15785 131 141 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.00018232 77.677 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.228 1.0257 19.794 5 Median 1.2881 1.2124 NaN 1 0 Median 1.228 1.0257 NaN 1 0 Median 1.0575 1.0164 36.218 2 1 Median 1.2006 1.0017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18402000 8564100 9838200 5765200 2502700 3262600 3785500 1584200 2201300 6959300 3638300 3321000 1892300 839040 1053300 0 0 0 0 0 0 2057 2971 2145 10685;10686;10687;10688;10689 10977;10978;10979;10980;10981 10978 5 ALMGSPQLVAAVVR AMIVNQLSKKEASRRALMGSPQLVAAVVRT RALMGSPQLVAAVVRTMQNTSDLDTARCTT R A L V R T 3 1 0 0 0 1 0 1 0 0 2 0 1 0 1 1 0 0 0 3 0 0 14 0 1410.8017 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 178 191 JUP Junction plakoglobin yes no 2 5.762E-11 123.63 By MS/MS By MS/MS By matching By MS/MS 1 2 1 4 0.60276 0.59111 108.15 8 Median 0.59944 0.59019 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.15512 0.16796 182.05 2 1 Median 0.65281 0.55121 NaN 1 0 Median 0.68297 0.68985 79.737 4 4 Median NaN NaN NaN 0 0 Median 20480000 11564000 8916000 2305300 1454500 850800 0 0 0 6755500 4636000 2119400 348040 225300 122740 11071000 5248100 5823000 0 0 0 2058 2013 2146;2147 10690;10691;10692;10693;10694;10695;10696;10697 10982;10983;10984;10985;10986;10987;10988;10989 10986 802 8 ALMLELK ______________________________ QQMTSSQKALMLELKSLQEEPVEGFRITLV K A L L K S 1 0 0 0 0 0 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 7 0 816.47791 Q712K3 Q712K3 12 18 UBE2R2 Ubiquitin-conjugating enzyme E2 R2 yes yes 2 0.028199 50.966 By MS/MS By matching 1 1 0.86457 0.7861 14.241 2 Median 0.88521 0.86939 NaN 1 0 Median 0.84441 0.7108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2019200 1095400 923800 1928700 1046500 882160 90513 48878 41635 0 0 0 0 0 0 0 0 0 0 0 0 2059 3210 2148 10698;10699 10990 10990 1 ALMLQGVDLLADAVAVTMGPK TRAYAKDVKFGADARALMLQGVDLLADAVA VDLLADAVAVTMGPKGRTVIIEQSWGSPKV R A L P K G 4 0 0 2 0 1 0 2 0 0 4 1 2 0 1 0 1 0 0 3 0 0 21 0 2112.1323 P10809;E7ESH4;E7EXB4;C9JL25;C9JCQ4;C9JL19;C9J0S9 P10809 38 58 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2;3 7.8678E-06 43.382 By MS/MS By MS/MS 3 1 1.0132 0.96289 8.9339 4 Median 1.0002 0.94532 2.144 3 0 Median 1.3053 1.14 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18681000 8768200 9913000 17729000 8365100 9364200 951840 403040 548790 0 0 0 0 0 0 0 0 0 0 0 0 2060 1947 2149;2150 10700;10701;10702;10703 10991;10992;10993;10994;10995;10996 10991 718 6 ALMTGSLPGFVDVIR VAEAKPPTVTMPRIKALMTGSLPGFVDVIR ALMTGSLPGFVDVIRNLNSPALLEDSVIRQ K A L I R N 1 1 0 1 0 0 0 2 0 1 2 0 1 1 1 1 1 0 0 2 0 0 15 0 1574.849 D6R9J9;E7EM50;D6RFE8;E7EWV1;Q5H8A4 D6R9J9 121 135 PIGG GPI ethanolamine phosphate transferase 2 yes no 2 0.00036566 59.542 By MS/MS By matching 1 1 1.3819 1.2749 33.048 2 Median 0.99916 1.0092 NaN 1 0 Median 1.9111 1.6106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3507700 1408000 2099700 1881900 907950 973960 1625800 500010 1125800 0 0 0 0 0 0 0 0 0 0 0 0 2061 803 2151 10704;10705 10997 10997 1 ALMTVGKEPFPTIYVDSQK TGDGTKEKPFKTGLKALMTVGKEPFPTIYV VGKEPFPTIYVDSQKENERWNVISKSQLKN K A L Q K E 1 0 0 1 0 1 1 1 0 1 1 2 1 1 2 1 2 0 1 2 0 0 19 1 2123.0973 O43776;K7EQ35;K7EIU7;K7EJ19 O43776 32 50 NARS Asparagine--tRNA ligase, cytoplasmic yes no 3 0.066858 8.6613 By MS/MS By matching 1 1 0.85622 0.85718 13.014 2 Median 0.82057 0.78182 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89343 0.93981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3421000 1732500 1688500 1880300 965960 914300 0 0 0 1540700 766510 774230 0 0 0 0 0 0 0 0 0 2062 1589 2152 10706;10707 10998 10998 1 ALMTVGKEPFPTIYVDSQKENER TGDGTKEKPFKTGLKALMTVGKEPFPTIYV PFPTIYVDSQKENERWNVISKSQLKNIKKM K A L E R W 1 1 1 1 0 1 3 1 0 1 1 2 1 1 2 1 2 0 1 2 0 0 23 2 2651.3265 O43776;K7EQ35;K7EIU7;K7EJ19 O43776 32 54 NARS Asparagine--tRNA ligase, cytoplasmic yes no 3;4 8.6148E-18 76.733 By MS/MS 2 0.77161 0.83531 12.614 2 Median 0.77161 0.83531 12.614 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20007000 10262000 9745000 20007000 10262000 9745000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2063 1589 2153 10708;10709 10999;11000;11001;11002 11001 4 ALNEGGFQSIPK RPTLEGGKRIAYGARALNEGGFQSIPKLTF GARALNEGGFQSIPKLTFPGGLLIGCSPGF R A L P K L 1 0 1 0 0 1 1 2 0 1 1 1 0 1 1 1 0 0 0 0 0 0 12 0 1259.651 Q16134 Q16134 365 376 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes yes 2 0.0014698 52.579 By MS/MS 1 0.72603 0.68432 NaN 1 Median 0.72603 0.68432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10025000 5497800 4527300 10025000 5497800 4527300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2064 2979 2154 10710 11003 11003 1 ALNEINQFYQK TEEVKITVDDKHYQKALNEINQFYQKFPQY HYQKALNEINQFYQKFPQYLQYLYQGPIVL K A L Q K F 1 0 2 0 0 2 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 11 0 1366.6881 CON__P02663 CON__P02663 81 91 yes yes 2 0.0046892 68.735 By MS/MS 1 0.12281 0.12093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12281 0.12093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2716700 2422600 294150 0 0 0 0 0 0 2716700 2422600 294150 0 0 0 0 0 0 0 0 0 + 2065 743 2155 10711 11004 11004 1 ALNEMWK CLYYLYASLDPNAVKALNEMWKCQNMLRSH SLDPNAVKALNEMWKCQNMLRSHVRELLDL K A L W K C 1 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 7 0 890.43202 Q9NTI5;Q29RF7;H0Y9L9 Q29RF7 501 507 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A no no 2 0.034035 79.454 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2066 3003;4107 2156 10712;10713 11005;11006 11005 2 ALNFGLGR YTKHQIRQMEMKILRALNFGLGRPLPLHFL MEMKILRALNFGLGRPLPLHFLRRASKIGE R A L G R P 1 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 846.47119 P14635;E9PC90;H0YA62 P14635 292 299 CCNB1 G2/mitotic-specific cyclin-B1 yes no 2 0.00012562 107.74 By MS/MS By MS/MS 1 1 1.213 1.1244 31.894 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4224 1.4088 NaN 1 1 Median 1.0344 0.89737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9038700 3114900 5923700 0 0 0 0 0 0 8378800 2796000 5582800 659890 318900 340990 0 0 0 0 0 0 2067 2007 2157 10714;10715 11007;11008 11007 2 ALNFGLGRPLPLHFLR YTKHQIRQMEMKILRALNFGLGRPLPLHFL LNFGLGRPLPLHFLRRASKIGEVDVEQHTL R A L L R R 1 2 1 0 0 0 0 2 1 0 5 0 0 2 2 0 0 0 0 0 0 0 16 1 1820.0573 P14635;E9PC90;H0YA62 P14635 292 307 CCNB1 G2/mitotic-specific cyclin-B1 yes no 3 4.3949E-08 97.551 By MS/MS 1 0.68804 0.64178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68804 0.64178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7004700 4204400 2800300 0 0 0 0 0 0 0 0 0 7004700 4204400 2800300 0 0 0 0 0 0 2068 2007 2158 10716 11009;11010 11010 2 ALNGAEPNYHSLPSAR EERKLLLDPSSPPTKALNGAEPNYHSLPSA LNGAEPNYHSLPSARTDEQALLSSILAKTA K A L A R T 3 1 2 0 0 0 1 1 1 0 2 0 0 0 2 2 0 0 1 0 0 0 16 0 1695.8329 Q6IAA8;F5GX19;F5H3Y3;H0YFI1;F5H479 Q6IAA8 32 47 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 3 3.5534E-05 53.777 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.77517 0.73391 28.998 4 Median 0.63446 0.61593 NaN 1 0 Median 1.1479 0.95269 NaN 1 0 Median 0.48954 0.51541 NaN 1 0 Median 0.94708 0.87449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20762000 10938000 9824400 11303000 6259200 5044200 2480600 1123000 1357600 4156600 2351000 1805600 2821800 1204800 1617000 0 0 0 0 0 0 2069 3137 2159 10717;10718;10719;10720 11011;11012;11013 11011 3 ALNHEIEELEK IKLQEELSENDKKIKALNHEIEELEKRKDK KKIKALNHEIEELEKRKDKETGGILRSLED K A L E K R 1 0 1 0 0 0 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1323.667 O95347;Q5T821 O95347 276 286 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 5.0849E-27 173.64 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 2 1.1445 1.1194 39.761 9 Median 1.2877 1.247 4.6401 2 1 Median 1.1157 0.9648 NaN 1 0 Median 1.2055 1.2854 19.554 2 1 Median 1.0354 0.9094 5.0644 2 0 Median NaN NaN NaN 0 0 Median 1.8354 1.7479 85.396 2 0 Median 93542000 40738000 52803000 22731000 10633000 12098000 3479100 1578100 1900900 40213000 16202000 24011000 25769000 11889000 13880000 0 0 0 1350000 437120 912830 2070 1766 2160 10721;10722;10723;10724;10725;10726;10727;10728;10729 11014;11015;11016;11017;11018;11019;11020;11021;11022 11015 9 ALNILQSTNMAFGK GMKALVTLSSGDMRRALNILQSTNMAFGKV RALNILQSTNMAFGKVTEETVYTCTGHPLK R A L G K V 2 0 2 0 0 1 0 1 0 1 2 1 1 1 0 1 1 0 0 0 0 0 14 0 1506.7864 P40937 P40937 216 229 RFC5 Replication factor C subunit 5 yes yes 2 9.5227E-11 119.16 By MS/MS 1 1.1087 1.0665 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1087 1.0665 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9084500 4059500 5025100 0 0 0 0 0 0 9084500 4059500 5025100 0 0 0 0 0 0 0 0 0 2071 2293 2161 10730 11023 11023 1 ALNIVDQEGSLLGK DSVLRGGSQVQARGRALNIVDQEGSLLGKG RALNIVDQEGSLLGKGETQGLLTAKGGVGK R A L G K G 1 0 1 1 0 1 1 2 0 1 3 1 0 0 0 1 0 0 0 1 0 0 14 0 1455.7933 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 229 242 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 1.1647E-06 97.456 By matching By MS/MS By MS/MS By matching 1 1 4 1 1.0077 0.93115 20.133 7 Median NaN NaN NaN 0 0 Median 1.1983 1.0513 NaN 1 0 Median 0.73028 0.79182 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96522 0.97469 24.214 4 1 Median 1.0587 0.93115 NaN 1 0 Median 18081000 9345400 8735400 0 0 0 631830 247620 384210 4270100 2316300 1953800 0 0 0 12677000 6608500 6068900 501470 172900 328570 2072 1437 2162 10731;10732;10733;10734;10735;10736;10737 11024;11025;11026 11024 3 ALNKGDANSEVTVYYQSGTR QVVELPSGHHLCKVKALNKGDANSEVTVYY DANSEVTVYYQSGTRSLREYTLMELLVMHM K A L T R S 2 1 2 1 0 1 1 2 0 0 1 1 0 0 0 2 2 0 2 2 0 0 20 1 2172.0447 O43847;G3V1R5;H0Y5G9 O43847 910 929 NRD1 Nardilysin yes no 3 1.4093E-14 107.72 By MS/MS By MS/MS 1 1 1.1055 1.0993 10.761 2 Median 1.1385 1.1862 NaN 1 0 Median 1.0735 1.0188 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13458000 5103500 8354100 11608000 4404900 7203100 1849500 698590 1151000 0 0 0 0 0 0 0 0 0 0 0 0 2073 1597 2163 10738;10739 11027;11028;11029 11028 3 ALNLAYSSIYGSYR DKQPNAQPQYLHGSKALNLAYSSIYGSYRN KALNLAYSSIYGSYRNFVGPPHFQVICRLL K A L Y R N 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 3 0 0 3 0 0 0 14 0 1576.7886 Q7L576 Q7L576 893 906 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 2 0.00066409 69.01 By MS/MS 1 0.5596 0.5411 NaN 1 Median 0.5596 0.5411 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4817700 3062900 1754900 4817700 3062900 1754900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2074 3224 2164 10740 11030 11030 1 ALNLFQGSVEDTTGSQSLAALLNK FDFSQYMKLDIAAVRALNLFQGSVEDTTGS EDTTGSQSLAALLNKCKTPQGQRLVNQWIK R A L N K C 3 0 2 1 0 2 1 2 0 0 5 1 0 1 0 3 2 0 0 1 0 0 24 0 2476.2809 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 309 332 MSH2 DNA mismatch repair protein Msh2 yes no 3 0.060301 6.9526 By MS/MS By matching 2 1 0.89375 0.93414 4.1288 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89375 0.93414 0 2 0 Median NaN NaN NaN 0 0 Median 0.97574 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median 3410000 1753100 1656900 0 0 0 0 0 0 2955300 1499300 1456000 0 0 0 454680 253830 200850 0 0 0 2075 2324 2165 10741;10742;10743 11031 11031 1 ALNLQEK A L E K 1 0 1 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 814.45487 REV__E9PHM6 yes no 2 0.048488 40.921 By MS/MS 1 1.1928 1.034 NaN 1 Median NaN NaN NaN 0 0 Median 1.1928 1.034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 495460 237470 257990 0 0 0 495460 237470 257990 0 0 0 0 0 0 0 0 0 0 0 0 + 2076 4518 2166 10744 11032 11032 1 ALNMAIPGGPK NYFYLFDLKAFFTSKALNMAIPGGPKFEPL FTSKALNMAIPGGPKFEPLVRDINLQDEDW K A L P K F 2 0 1 0 0 0 0 2 0 1 1 1 1 0 2 0 0 0 0 0 0 0 11 0 1067.5798 Q6P2Q9;I3L0J9 Q6P2Q9 268 278 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00058491 79.906 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.71967 0.77726 18.297 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64688 0.71689 3.2052 2 0 Median 1.0626 0.97764 NaN 1 0 Median 0.65437 0.69778 23.484 2 1 Median 1.0508 0.90231 NaN 1 0 Median 33157000 19508000 13649000 0 0 0 0 0 0 21510000 13020000 8489400 410680 189870 220810 10393000 5862800 4530700 843500 435600 407890 2077 3157 2167;2168 10745;10746;10747;10748;10749;10750 11033;11034;11035;11036;11037 11034 1668 5 ALNQEQVIAVHIDNGFMR SGGVDSTVCTALLNRALNQEQVIAVHIDNG QEQVIAVHIDNGFMRKRESQSVEEALKKLG R A L M R K 2 1 2 1 0 2 1 1 1 2 1 0 1 1 0 0 0 0 0 2 0 0 18 0 2054.0367 P49915 P49915 259 276 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 2.243E-06 57.499 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1059 1.0029 6.3875 4 Median 1.0683 1.0111 NaN 1 0 Median 1.121 0.96672 NaN 1 0 Median 1.0911 1.1195 NaN 1 0 Median 1.1926 0.99485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16259000 7908500 8350900 7664800 3720200 3944600 1254000 599480 654500 7127700 3446200 3681500 212940 142590 70341 0 0 0 0 0 0 2078 2405 2169 10751;10752;10753;10754 11038;11039;11040;11041 11039 4 ALNRPPTYPTK NGIKTVIVNMVDVAKALNRPPTYPTKYFGC DVAKALNRPPTYPTKYFGCELGAQTQFDVK K A L T K Y 1 1 1 0 0 0 0 0 0 0 1 1 0 0 3 0 2 0 1 0 0 0 11 1 1256.6877 P55010;H0YK11;H0YMJ8;H0YM54;H0YLZ1;H0YN40 P55010 45 55 EIF5 Eukaryotic translation initiation factor 5 yes no 3 0.010159 30.872 By matching By matching By MS/MS 1 2 1 0.56958 0.60209 24.244 4 Median NaN NaN NaN 0 0 Median 0.4253 0.38862 NaN 1 0 Median 0.56958 0.60361 10.741 2 0 Median 0.6905 0.64795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6436000 4367200 2068900 0 0 0 2183400 1675000 508450 2132500 1393100 739450 2120100 1299100 820970 0 0 0 0 0 0 2079 2489 2170 10755;10756;10757;10758 11042;11043;11044 11044 3 ALNSAANNVYQYGR PEWANWLPEAQVVQRALNSAANNVYQYGRE RALNSAANNVYQYGREWITHKLHKILGDKV R A L G R E 3 1 3 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 14 0 1539.743 Q9H330;H7C0G1 Q9H330 522 535 TMEM245 Transmembrane protein 245 yes no 2 2.8261E-23 193.52 By MS/MS By MS/MS By MS/MS 2 1 1 1.525 0.95842 51.368 4 Linear 1.0122 1.0553 14.847 2 0 Median 1.2091 0.96683 NaN 1 0 Median 0.35297 0.37345 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57832000 28425000 29408000 20436000 10194000 10242000 29332000 12300000 17032000 8064800 5931000 2133800 0 0 0 0 0 0 0 0 0 2080 3951 2171 10759;10760;10761;10762 11045;11046;11047 11047 3 ALNSMGQDLERPLELR IVDREVTPFFIIYCRALNSMGQDLERPLEL LNSMGQDLERPLELRVRVLDINDNPPVFSM R A L L R V 1 2 1 1 0 1 2 1 0 0 4 0 1 0 1 1 0 0 0 0 0 0 16 1 1840.9465 Q02413 Q02413 129 144 DSG1 Desmoglein-1 yes yes 3 0.030744 26.729 By MS/MS 1 0.12856 0.14448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12856 0.14448 NaN 1 1 Median NaN NaN NaN 0 0 Median 1835100 1597900 237170 0 0 0 0 0 0 0 0 0 0 0 0 1835100 1597900 237170 0 0 0 2081 2698 2172 10763 11048 11048 1 ALNTLSSPGQSSFSHGTR IPGKTILENSVKHSKALNTLSSPGQSSFSH TLSSPGQSSFSHGTRNNSAKENMEKEKPVK K A L T R N 1 1 1 0 0 1 0 2 1 0 2 0 0 1 1 5 2 0 0 0 0 0 18 0 1845.8969 Q8WWQ0 Q8WWQ0 1554 1571 PHIP PH-interacting protein yes yes 3 1.495E-06 61.815 By matching By MS/MS By matching 1 2 1 0.7153 0.71088 17.606 4 Median NaN NaN NaN 0 0 Median 0.73758 0.66459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69007 0.71088 0.0046239 2 0 Median 1.207 0.9828 NaN 1 0 Median 24904000 13605000 11299000 0 0 0 2491700 1200200 1291500 0 0 0 0 0 0 20785000 11536000 9249100 1626800 868600 758190 2082 3512 2173 10764;10765;10766;10767 11049 11049 1 ALNTTDSSSSPSLADGIDTSGGGSIHVISR QSASEITRAFDTLAKALNTTDSSSSPSLAD GIDTSGGGSIHVISRDQSTPIIEVEGPLLS K A L S R D 2 1 1 3 0 0 0 4 1 3 2 0 0 0 1 8 3 0 0 1 0 0 30 0 2901.3952 P49116 P49116 319 348 NR2C2 Nuclear receptor subfamily 2 group C member 2 yes yes 3 1.1039E-05 35.376 By MS/MS By matching 2 1 0.77754 0.65493 34.672 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79725 0.83588 44.806 2 0 Median 0.77754 0.65493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8103800 4287100 3816700 0 0 0 0 0 0 7547100 3999400 3547700 556730 287650 269080 0 0 0 0 0 0 2083 2371 2174 10768;10769;10770 11050 11050 1 ALPASETPK AKSPNPSTPRGKKRKALPASETPKAAESET RGKKRKALPASETPKAAESETPGKSPEKKP K A L P K A 2 0 0 0 0 0 1 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 9 0 912.49165 O76021;J3QSV6 O76021 409 417 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.020027 55.531 By MS/MS 1 1.0856 1.0342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0856 1.0342 NaN 1 1 Median NaN NaN NaN 0 0 Median 6698400 1513100 5185300 0 0 0 0 0 0 0 0 0 0 0 0 6698400 1513100 5185300 0 0 0 2084 1716 2175 10771 11051 11051 1 ALPAVQQNNLDEDLIR DAAELVALAQAVNARALPAVQQNNLDEDLI LPAVQQNNLDEDLIRKLAYVAAGDLAPINA R A L I R K 2 1 2 2 0 2 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 16 0 1807.9428 P22314 P22314 369 384 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 2.168E-20 171.05 By MS/MS By matching By MS/MS By MS/MS By matching 3 4 1 2 1 0.9608 0.82379 9.6922 11 Median 0.77969 0.74552 4.1623 3 0 Median 1.0985 0.93058 7.0332 4 0 Median 0.74417 0.81831 NaN 1 1 Median 0.98526 0.82635 1.2289 2 0 Median 0.77663 0.82379 NaN 1 0 Median NaN NaN NaN 0 0 Median 211770000 108380000 103390000 171920000 89516000 82408000 25546000 11349000 14196000 10165000 5461700 4703200 1704700 858520 846170 2430900 1194100 1236700 0 0 0 2085 2100 2176 10772;10773;10774;10775;10776;10777;10778;10779;10780;10781;10782 11052;11053;11054;11055;11056;11057;11058;11059;11060 11059 9 ALPAVQQNNLDEDLIRK DAAELVALAQAVNARALPAVQQNNLDEDLI PAVQQNNLDEDLIRKLAYVAAGDLAPINAF R A L R K L 2 1 2 2 0 2 1 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 17 1 1936.0378 P22314 P22314 369 385 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 5.7396E-13 120.57 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.87629 0.87883 19.315 9 Median 0.83575 0.87315 3.6725 4 1 Median 0.96661 0.92419 11.386 2 0 Median 0.98769 1.1194 15.203 2 0 Median 1.4963 1.4379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 322580000 160450000 162130000 255020000 129100000 125920000 37352000 16706000 20646000 28769000 13971000 14798000 1437000 673110 763910 0 0 0 0 0 0 2086 2100 2177 10783;10784;10785;10786;10787;10788;10789;10790;10791 11061;11062;11063;11064;11065;11066;11067;11068;11069;11070;11071;11072;11073 11064 13 ALPEFFNGK AAWFDYNSVHAIERRALPEFFNGKNKSKTP HAIERRALPEFFNGKNKSKTPEIYLAYRNF R A L G K N 1 0 1 0 0 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1021.5233 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 445 453 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.00059487 111.04 By matching By matching By MS/MS By matching By MS/MS 1 1 2 3 2 1.0601 0.94352 24.553 8 Median 1.3098 1.3119 NaN 1 0 Median 1.7283 1.5574 NaN 1 0 Median 0.75887 0.80752 8.5548 2 0 Median 1.1007 0.95743 11.24 3 0 Median 0.80214 0.84066 NaN 1 1 Median NaN NaN NaN 0 0 Median 31486000 16724000 14762000 1432300 586340 845960 263000 93585 169420 20440000 11236000 9204600 4003400 1805900 2197500 5346800 3002600 2344200 0 0 0 2087 3455;3567 2178 10792;10793;10794;10795;10796;10797;10798;10799;10800 11074;11075;11076;11077 11074 4 ALPESLGQHALR GHPAAFGRATHAVVRALPESLGQHALRSAK VVRALPESLGQHALRSAKGEEVDVARAERQ R A L L R S 2 1 0 0 0 1 1 1 1 0 3 0 0 0 1 1 0 0 0 0 0 0 12 0 1290.7044 O94760 O94760 20 31 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 2;3 1.9556E-09 172.94 By MS/MS By MS/MS 2 2 0.97337 0.92306 7.1985 4 Linear 0.97027 0.90767 5.1823 2 0 Median 0.97337 0.81168 1.9124 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57875000 26837000 31039000 47976000 22111000 25865000 9899000 4725400 5173600 0 0 0 0 0 0 0 0 0 0 0 0 2088 1722 2179 10801;10802;10803;10804 11078;11079;11080;11081;11082;11083;11084;11085 11079 8 ALPFVPMSYQLSQTYYR NRRRVNHTLGPKKNRALPFVPMSYQLSQTY PFVPMSYQLSQTYYRIFTWRFPSTICTESF R A L Y R I 1 1 0 0 0 2 0 0 0 0 2 0 1 1 2 2 1 0 3 1 0 0 17 0 2063.0186 Q12789;I3L1Z3 Q12789 1493 1509 GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 0.057919 9.2834 By MS/MS 1 0.62408 0.69591 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62408 0.69591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 724870 444650 280220 0 0 0 0 0 0 724870 444650 280220 0 0 0 0 0 0 0 0 0 2089 2758 2180 10805 11086 11086 1 ALPFWNEEIVPQIK DQLPSCESLKDTIARALPFWNEEIVPQIKE RALPFWNEEIVPQIKEGKRVLIAAHGNSLR R A L I K E 1 0 1 0 0 1 2 0 0 2 1 1 0 1 2 0 0 1 0 1 0 0 14 0 1682.9032 P18669;P15259;Q8N0Y7 P18669 163 176 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 2 3.4062E-07 115.42 By MS/MS By MS/MS By matching By matching By matching 5 2 1 1 1 0.80721 0.75677 23.396 10 Median 0.70238 0.68842 24.413 5 1 Median 0.93473 0.78466 4.1568 2 0 Median 0.79539 0.76483 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90013 0.91833 NaN 1 0 Median 1.0344 0.87056 NaN 1 0 Median 397530000 223420000 174110000 347730000 198390000 149340000 44071000 22091000 21980000 2146100 1183000 963170 0 0 0 1925100 973610 951470 1664600 786740 877820 2090 2060 2181 10806;10807;10808;10809;10810;10811;10812;10813;10814;10815 11087;11088;11089;11090;11091;11092 11091 6 ALPGQLKPFETLLSQNQGGK LIYTNYEAGKDDYVKALPGQLKPFETLLSQ LKPFETLLSQNQGGKTFIVGDQISFADYNL K A L G K T 1 0 1 0 0 3 1 3 0 0 4 2 0 1 2 1 1 0 0 0 0 0 20 1 2125.1532 P09211;A0A087X243 P09211 122 141 GSTP1 Glutathione S-transferase P yes no 2;3;4 5.9392E-31 191.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 12 5 2 1 3 1 0.80304 0.78134 82.427 24 Median 0.74346 0.73998 111.87 12 1 Median 0.87581 0.79434 13.624 5 0 Median 0.72212 0.72318 12.014 2 0 Median 0.95632 0.86122 NaN 1 0 Median 0.94773 1.017 17.986 3 1 Median 1.0908 0.94671 NaN 1 0 Median 2552400000 1653900000 898480000 2231700000 1488800000 742830000 266660000 137180000 129480000 18588000 10128000 8460300 4030200 1971300 2058900 26225000 13238000 12987000 5266300 2600400 2665900 2091 1912 2182 10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826;10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837;10838;10839 11093;11094;11095;11096;11097;11098;11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109;11110;11111;11112;11113;11114;11115;11116;11117;11118;11119;11120;11121;11122;11123;11124;11125 11100 33 ALPLEAEVAPVK MTLPPETNVILTKDKALPLEAEVAPVKDMA KDKALPLEAEVAPVKDMAQLPETEIAPAKD K A L V K D 3 0 0 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 12 0 1235.7125 E7EVA0;P27816 E7EVA0 482 493 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00059322 72.325 By matching By matching By MS/MS By MS/MS 1 3 1 3 0.80233 0.6924 31.199 8 Median 0.55903 0.52498 NaN 1 0 Median 0.65826 0.57445 23.813 3 0 Median 1.1904 1.2866 NaN 1 0 Median 0.84977 0.74416 4.7067 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20735000 11151000 9584500 1535700 968820 566840 4468600 2390500 2078000 2599000 1296200 1302800 12132000 6495400 5636800 0 0 0 0 0 0 2092 895 2183 10840;10841;10842;10843;10844;10845;10846;10847 11126;11127;11128;11129 11128 4 ALPLEAEVAPVKDMAQLPETEIAPAK MTLPPETNVILTKDKALPLEAEVAPVKDMA KDMAQLPETEIAPAKDVAPSTVKEVGLLKD K A L A K D 6 0 0 1 0 1 4 0 0 1 3 2 1 0 4 0 1 0 0 2 0 0 26 1 2730.4514 E7EVA0;P27816 E7EVA0 482 507 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.057596 8.9676 By MS/MS By MS/MS By matching 1 2 1 0.53409 0.5513 34.885 4 Median 0.43297 0.43884 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67549 0.77348 31.154 2 0 Median 0.52588 0.48978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10242000 5785500 4456300 2321500 1434000 887580 0 0 0 7361900 4014900 3346900 558330 336590 221740 0 0 0 0 0 0 2093 895 2184 10848;10849;10850;10851 11130;11131 11131 2 ALPLEAEVAPVKDMAQLPETEIAPAKDVAPSTVK MTLPPETNVILTKDKALPLEAEVAPVKDMA TEIAPAKDVAPSTVKEVGLLKDMSPLSETE K A L V K E 7 0 0 2 0 1 4 0 0 1 3 3 1 0 5 1 2 0 0 4 0 0 34 2 3527.8797 E7EVA0;P27816 E7EVA0 482 515 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 4 0.055605 8.1311 By MS/MS 1 0.43171 0.47266 NaN 1 Median 0.43171 0.47266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5564300 3534500 2029800 5564300 3534500 2029800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2094 895 2185 10852 11132 11132 1 ALPLIVGAQLIHADK ______________________________ ALPLIVGAQLIHADKLGEKVEDSTMPIRRT K A L D K L 3 0 0 1 0 1 0 1 1 2 3 1 0 0 1 0 0 0 0 1 0 0 15 0 1557.9243 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 15 29 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0012693 41.283 By MS/MS 1 0.64535 0.68144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64535 0.68144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4978400 3133900 1844500 0 0 0 0 0 0 4978400 3133900 1844500 0 0 0 0 0 0 0 0 0 2095 3075 2186 10853 11133 11133 1 ALPMHIR EVDDEALEKFDKALKALPMHIRLSFNPTQL EKFDKALKALPMHIRLSFNPTQLEEQCHI_ K A L I R L 1 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 7 0 836.46908 CON__P02754 CON__P02754 142 148 yes yes 2 0.025554 69.39 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1516400 1516400 0 0 0 0 0 0 0 0 0 0 1516400 1516400 0 0 0 0 0 0 0 + 2096 745 2187 10854 11134 11134 1 ALPNNTSSSPQPK KGEPHHELPPGSTKRALPNNTSSSPQPKKK KRALPNNTSSSPQPKKKPLDGEYFTLQIRG R A L P K K 1 0 2 0 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 0 0 0 13 0 1339.6732 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22 A0A0U1RQC9 268 280 TP53 Cellular tumor antigen p53 yes no 2 0.0096284 44.309 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.61953 0.64418 43.203 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61953 0.64418 NaN 1 0 Median 0.80256 0.71609 NaN 1 0 Median 0.3349 0.32319 NaN 1 0 Median NaN NaN NaN 0 0 Median 2099200 1224700 874480 0 0 0 0 0 0 817180 473540 343640 463910 220300 243610 818070 530840 287230 0 0 0 2097 299 2188 10855;10856;10857;10858 11135;11136;11137 11135 3 ALPPGPPTGATANR EREERMGQLRGSATRALPPGPPTGATANRL RALPPGPPTGATANRLRSAAEPVASTPASR R A L N R L 3 1 1 0 0 0 0 2 0 0 1 0 0 0 4 0 2 0 0 0 0 0 14 0 1318.6993 P49674;H0Y5S9;H0Y682 P49674 327 340 CSNK1E Casein kinase I isoform epsilon yes no 2 0.0015468 48.004 By MS/MS By MS/MS 1 1 0.50696 0.47406 35.367 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60639 0.60875 NaN 1 0 Median 0.42384 0.36916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3152300 1975700 1176600 0 0 0 0 0 0 1659000 919360 739640 1493300 1056300 436990 0 0 0 0 0 0 2098 2390 2189 10859;10860 11138;11139 11138 2 ALPQNKPRPLTQEEIAQR PVIIFVSKMFAVDAKALPQNKPRPLTQEEI QNKPRPLTQEEIAQRRERARQRHAEKLAAA K A L Q R R 2 2 1 0 0 3 2 0 0 1 2 1 0 0 3 0 1 0 0 0 0 0 18 2 2088.144 Q7Z2Z2 Q7Z2Z2 424 441 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 3 0.0030521 26.365 By MS/MS 1 0.69323 0.74665 NaN 1 Median 0.69323 0.74665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3411700 2008700 1403100 3411700 2008700 1403100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2099 3238 2190 10861 11140 11140 1 ALPSEELNR VEYTLGEESEAPGQRALPSEELNRQLEKLL EAPGQRALPSEELNRQLEKLLKEGSSNQRV R A L N R Q 1 1 1 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 1027.5298 E7EX73;E9PGM1;E7EUU4;Q04637;H7C0V6 E7EX73 1274 1282 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.000446 126.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1 1.0572 0.94936 28.441 9 Median 0.9671 0.90996 NaN 1 0 Median 1.1446 0.96936 2.9477 2 1 Median 1.0572 1.1643 NaN 1 0 Median 0.84297 0.73679 18.997 2 1 Median 1.4283 1.5142 0.23154 2 1 Median 0.97643 0.8083 NaN 1 0 Median 42526000 19954000 22572000 8690300 4691400 3999000 9935500 4793600 5141900 5300800 2454400 2846400 3114700 1589200 1525500 8208100 3302500 4905600 7276200 3122900 4153300 2100 894 2191 10862;10863;10864;10865;10866;10867;10868;10869;10870 11141;11142;11143;11144;11145;11146;11147;11148;11149 11141 9 ALPSKPNSLDQFK DFNKVMQVVREQITRALPSKPNSLDQFKSK TRALPSKPNSLDQFKSKLRSLSYSEILRLR R A L F K S 1 0 1 1 0 1 0 0 0 0 2 2 0 1 2 2 0 0 0 0 0 0 13 1 1443.7722 Q5JVZ5;Q96JJ3;Q5JW01;H0YCM7 Q5JVZ5 482 494 ELMO2 Engulfment and cell motility protein 2 yes no 3 0.0032214 51.211 By MS/MS By MS/MS 1 1 0.59926 0.62631 24.844 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4699 0.5254 NaN 1 1 Median 0.76425 0.74659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11906000 6733600 5172000 0 0 0 0 0 0 8665300 5116600 3548800 3240300 1617000 1623300 0 0 0 0 0 0 2101 3058 2192 10871;10872 11150;11151 11150 2 ALPSQGLSSSAVLEK SKNMSFLKVDKEYVKALPSQGLSSSAVLEK ALPSQGLSSSAVLEKLKEYSSMDAFWQEGR K A L E K L 2 0 0 0 0 1 1 1 0 0 3 1 0 0 1 4 0 0 0 1 0 0 15 0 1485.8039 H0Y3V8;H7BXL7;O95470 H0Y3V8 29 43 SGPL1 Sphingosine-1-phosphate lyase 1 yes no 2 0.0093619 31.228 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.1036 1.0067 22.69 5 Median 0.86164 0.82238 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98846 1.0067 NaN 1 0 Median 1.1036 0.9502 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.623 1.3658 1.1193 2 0 Median 9794700 4958100 4836600 3340100 2068800 1271300 0 0 0 3568000 1573400 1994600 1362600 641330 721270 0 0 0 1524000 674560 849440 2102 1145 2193 10873;10874;10875;10876;10877 11152;11153 11152 2 ALPTSKPEGSLHSSPVGPSSSK SGPGDSGPSDPRLARALPTSKPEGSLHSSP EGSLHSSPVGPSSSKGSGPPPTEEEEGERA R A L S K G 1 0 0 0 0 0 1 2 1 0 2 2 0 0 4 7 1 0 0 1 0 0 22 1 2149.1015 M0QY97;Q9UPT8 M0QY97 502 523 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes no 3;4 8.7629E-07 40.012 By MS/MS By matching By MS/MS By matching 2 2 3 1 0.48054 0.47428 20.431 8 Median 0.44865 0.44403 12.513 2 0 Median 0.55705 0.5326 20.22 2 0 Median 0.49888 0.57108 27.286 3 0 Plateau 0.67684 0.62997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21803000 14217000 7586400 8573800 5958300 2615500 2848100 1234600 1613500 9951200 6800100 3151100 430410 224040 206380 0 0 0 0 0 0 2103 1413 2194 10878;10879;10880;10881;10882;10883;10884;10885 11154;11155;11156;11157;11158;11159;11160;11161 11160 8 ALQAAIQQLAEAQPEATAK FCLTLHRYRDAASRRALQAAIQQLAEAQPE AIQQLAEAQPEATAKNLLHSLQSSGIGSKA R A L A K N 7 0 0 0 0 4 2 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 19 0 1951.0375 Q92616 Q92616 69 87 GCN1L1 Translational activator GCN1 yes yes 2;3 2.3584E-14 109.84 By MS/MS By matching 2 2 0.90504 0.84643 10.165 4 Median 0.875 0.84643 3.1269 2 0 Median 1.0268 0.90069 16.174 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20888000 10477000 10411000 17637000 9062800 8573900 3251600 1414000 1837600 0 0 0 0 0 0 0 0 0 0 0 0 2104 3544 2195 10886;10887;10888;10889 11162;11163;11164;11165 11163 4 ALQAAYGASAPSVTSAALR FWKEHHFEAIALVEKALQAAYGASAPSVTS AYGASAPSVTSAALRWMYHHSQLQGAHGDA K A L L R W 7 1 0 0 0 1 0 1 0 0 2 0 0 0 1 3 1 0 1 1 0 0 19 0 1803.9479 H3BLU7;O43488 H3BLU7 234 252 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 2;3 1.0982E-18 154.47 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.1737 0.98718 12.398 7 Median 0.87725 0.81776 19.562 3 0 Median 1.2036 1.0029 1.1161 2 0 Median 0.92917 0.917 NaN 1 0 Median 1.1737 0.98718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192200000 97072000 95131000 175330000 89321000 86014000 13328000 5983500 7344200 3218500 1604700 1613900 322000 162740 159260 0 0 0 0 0 0 2105 1206 2196 10890;10891;10892;10893;10894;10895;10896 11166;11167;11168;11169;11170;11171;11172;11173 11167 8 ALQALEELR SRVKAEAEAAREKQRALQALEELRLQAEEA AREKQRALQALEELRLQAEEAERRLRQAEV R A L L R L 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1671 1679 PLEC Plectin yes yes 2 1.3397E-10 173.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.3385 1.1741 6.6891 7 Median 1.3385 1.296 NaN 1 0 Median 1.3722 1.0976 NaN 1 0 Median 1.0826 1.1696 0.54873 2 1 Median 1.4134 1.2305 NaN 1 0 Median 1.2639 1.3007 NaN 1 0 Median 1.3527 1.1214 NaN 1 0 Median 105260000 45313000 59946000 39696000 16348000 23349000 25020000 10572000 14448000 24033000 11431000 12601000 1803700 740940 1062800 9481200 4046700 5434500 5225500 2175000 3050500 2106 2933 2197 10897;10898;10899;10900;10901;10902;10903 11174;11175;11176;11177;11178;11179;11180;11181;11182;11183;11184;11185;11186 11175 13 ALQALEELRLQAEEAER SRVKAEAEAAREKQRALQALEELRLQAEEA QALEELRLQAEEAERRLRQAEVERARQVQV R A L E R R 4 2 0 0 0 2 5 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 17 1 1968.0276 Q15149 Q15149 1671 1687 PLEC Plectin yes yes 3 0.056164 20.049 By MS/MS 1 2.5196 2.7381 NaN 1 Median 2.5196 2.7381 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6256000 1827300 4428700 6256000 1827300 4428700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2107 2933 2198 10904 11187 11187 1 ALQALQQEHK EDEEFHGLDEATLLRALQALQQEHKAEIIT ATLLRALQALQQEHKAEIITVSDGRGVKFF R A L H K A 2 0 0 0 0 3 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1164.6251 Q9BRG1;K7EKV4 Q9BRG1 152 161 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 2 0.011836 42.109 By MS/MS By MS/MS 1 2 1.0014 0.95607 15.316 3 Median NaN NaN NaN 0 0 Median 1.1978 1.0479 NaN 1 0 Median 0.87611 0.86196 14.654 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2527200 1162200 1364900 0 0 0 547150 214940 332220 1980000 947310 1032700 0 0 0 0 0 0 0 0 0 2108 3795 2199 10905;10906;10907 11188;11189;11190 11188 3 ALQALQQEHKAEIITVSDGR EDEEFHGLDEATLLRALQALQQEHKAEIIT QQEHKAEIITVSDGRGVKFF__________ R A L G R G 3 1 0 1 0 3 2 1 1 2 2 1 0 0 0 1 1 0 0 1 0 0 20 1 2206.1706 Q9BRG1;K7EKV4 Q9BRG1 152 171 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 3;4 9.1216E-09 66.386 By matching By matching By MS/MS 1 1 2 1.2441 1.3135 40.994 4 Median 1.0217 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74064 0.76869 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5483 1.7444 3.1379 2 1 Median NaN NaN NaN 0 0 Median 20732000 8914800 11818000 6794700 2780700 4013900 0 0 0 5675700 3276400 2399300 0 0 0 8262000 2857600 5404300 0 0 0 2109 3795 2200 10908;10909;10910;10911 11191;11192 11191 2 ALQASALK CPLLKPWALTFSYGRALQASALKAWGGKKE LTFSYGRALQASALKAWGGKKENLKAAQEE R A L L K A 3 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 800.4756 J3KPS3;P04075;H3BQN4;H3BR68 J3KPS3 309 316 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.0031222 101.28 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3497 1.271 54.804 5 Median 1.3604 1.271 NaN 1 0 Median 1.6558 1.4401 39.185 2 0 Median 1.3497 1.4387 NaN 1 0 Median 0.52917 0.44716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65166000 28445000 36722000 7368900 3075100 4293800 51484000 22228000 29256000 4280000 1790000 2489900 2033800 1351700 682110 0 0 0 0 0 0 2110 1310 2201 10912;10913;10914;10915;10916 11193;11194;11195;11196;11197;11198 11196 6 ALQATVGNSYK DARDPAFKAANGSLRALQATVGNSYKCNAE GSLRALQATVGNSYKCNAEEHVRVTKAFSV R A L Y K C 2 0 1 0 0 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1150.5982 P11279 P11279 327 337 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 2 9.0174E-13 149.72 By MS/MS 2 0.64276 0.5394 9.5468 2 Median NaN NaN NaN 0 0 Median 0.64276 0.5394 9.5468 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91587000 60020000 31567000 0 0 0 91587000 60020000 31567000 0 0 0 0 0 0 0 0 0 0 0 0 2111 1961 2202 10917;10918 11199;11200 11199 2 ALQDEWDAVMLHSFTLR RPKPPSATSIPAILKALQDEWDAVMLHSFT QDEWDAVMLHSFTLRQQLQTTRQELSHALY K A L L R Q 2 1 0 2 0 1 1 0 1 0 3 0 1 1 0 1 1 1 0 1 0 0 17 0 2030.9884 Q9UMS4;F5GY56 Q9UMS4 77 93 PRPF19 Pre-mRNA-processing factor 19 yes no 3 1.3822E-06 84.14 By matching By matching By MS/MS By MS/MS By matching 1 2 6 2 2 1.0977 1.0586 18.135 13 Median 1.4088 1.361 NaN 1 0 Median 1.1725 1.0238 3.1129 2 0 Median 1.0647 1.0567 6.8519 6 0 Median 1.2901 1.113 3.3305 2 0 Median 1.2261 1.2678 50.706 2 0 Median NaN NaN NaN 0 0 Median 42749000 17905000 24844000 291900 116560 175340 4214200 1856500 2357600 33433000 13830000 19603000 3131300 1368400 1762900 1678900 734050 944830 0 0 0 2112 4334 2203;2204 10919;10920;10921;10922;10923;10924;10925;10926;10927;10928;10929;10930;10931 11201;11202;11203;11204;11205;11206 11203 1925 6 ALQDLENAASGDAAVHQR LGSPSEPPQTLDLVRALQDLENAASGDAAV DLENAASGDAAVHQRIASLPVEVQEVSLLD R A L Q R I 5 1 1 2 0 2 1 1 1 0 2 0 0 0 0 1 0 0 0 1 0 0 18 0 1864.9028 Q96P16;A0A0C4DGQ6;K7EP82 Q96P16 169 186 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2;3 3.1594E-08 88.992 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.83968 0.84865 9.925 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82353 0.80101 0.59906 2 0 Median 1.1827 0.98665 NaN 1 0 Median 0.83968 0.84865 NaN 1 0 Median 1.1505 0.959 NaN 1 0 Median 66603000 35243000 31361000 0 0 0 0 0 0 42151000 22628000 19523000 8383000 4519000 3864000 14037000 7046200 6990400 2033200 1049700 983530 2113 3709 2205 10932;10933;10934;10935;10936 11207;11208;11209;11210;11211;11212;11213 11207 7 ALQDLENAASGDATVR QDPSAGPLLTEELIKALQDLENAASGDATV LQDLENAASGDATVRQKIASLPQEVQDVSL K A L V R Q 4 1 1 2 0 1 1 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 16 0 1629.7958 Q9NQG5;A2A2M0 Q9NQG5 183 198 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2;3 1.3895E-19 182.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 3 3 2 1.052 0.91758 16.1 15 Median 0.91245 0.91147 17.032 3 3 Median 0.97695 0.82139 15.661 2 0 Median 0.87398 0.84842 3.3237 2 0 Median 1.1285 0.96231 4.5682 3 0 Plateau 1.1603 1.2091 15.352 3 1 Median 1.0612 0.90607 27.631 2 0 Median 158140000 79739000 78404000 9250000 4693000 4557000 5761200 2644000 3117200 98093000 50939000 47154000 5237500 2373200 2864300 36888000 17773000 19115000 2913200 1317200 1596000 2114 4062 2206 10937;10938;10939;10940;10941;10942;10943;10944;10945;10946;10947;10948;10949;10950;10951 11214;11215;11216;11217;11218;11219;11220;11221;11222;11223;11224;11225;11226;11227;11228;11229 11218 16 ALQDMSSTAPPAPQPSTR VLKDFLSGIQKKALKALQDMSSTAPPAPQP DMSSTAPPAPQPSTRKAKTIPVQAFEVKLD K A L T R K 3 1 0 1 0 2 0 0 0 0 1 0 1 0 4 3 2 0 0 0 0 0 18 0 1853.8942 O15357;A0A0A0MTP6;F5GY16 O15357 285 302 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.0075375 43.382 By MS/MS 1 0.49114 0.47846 NaN 1 Median 0.49114 0.47846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3549900 2281300 1268600 3549900 2281300 1268600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2115 1539 2207 10952 11230 11230 1 ALQDSAPDRPSPVER ASLNSQVWSALQMSKALQDSAPDRPSPVER ALQDSAPDRPSPVERIVSRDIARGYERIPI K A L E R I 2 2 0 2 0 1 1 0 0 0 1 0 0 0 3 2 0 0 0 1 0 0 15 1 1636.8169 Q9H9B1;A0A1B0GV09;A0A1B0GU48;A0A1B0GWF6;A0A0C4DGF8 Q9H9B1 994 1008 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 3 6.4337E-05 66.285 By MS/MS By MS/MS By MS/MS 1 1 3 0.82585 0.80369 36.905 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50545 0.61473 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59399 0.63629 NaN 1 1 Median 1.2908 1.1539 18.122 2 2 Median 14400000 8222900 6177400 0 0 0 0 0 0 6568900 4349400 2219500 0 0 0 3123800 1956300 1167500 4707500 1917100 2790400 2116 3997 2208 10953;10954;10955;10956;10957 11231;11232;11233;11234;11235;11236 11236 6 ALQDVQIR SAAGVLIKLFCVHTKALQDVQIRFQPQLNP LFCVHTKALQDVQIRFQPQLNPDVVAPLPT K A L I R F 1 1 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 941.52943 Q6P2E9 Q6P2E9 515 522 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.01337 53.166 By MS/MS 1 1.1282 0.94604 NaN 1 Median NaN NaN NaN 0 0 Median 1.1282 0.94604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1739200 732590 1006600 0 0 0 1739200 732590 1006600 0 0 0 0 0 0 0 0 0 0 0 0 2117 3155 2209 10958 11237 11237 1 ALQEESLGMEAQVER PPSQPCTPELPAGPRALQEESLGMEAQVER ALQEESLGMEAQVERAMEGNSSDQEQSPED R A L E R A 2 1 0 0 0 2 4 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 15 0 1688.8039 A0A494BYR6;Q86Y91 A0A494BYR6 447 461 KIF18B Kinesin-like protein KIF18B yes no 2 1.2032E-06 95.401 By MS/MS 1 0.91603 0.97566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91603 0.97566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6507500 3162900 3344600 0 0 0 0 0 0 6507500 3162900 3344600 0 0 0 0 0 0 0 0 0 2118 450 2210 10959 11238;11239 11239 2 ALQEFDLALR WFQTKEERKKEKIAKALQEFDLALRGKKKR EKIAKALQEFDLALRGKKKRKKFMKDAKKK K A L L R G 2 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 0 1174.6346 B7Z6D5;Q96GQ7 B7Z6D5 636 645 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.00053832 117.04 By MS/MS By matching 2 1 1.2054 1.1481 6.7923 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1062 1.14 9.5884 2 1 Median 1.3904 1.1481 NaN 1 0 Median 21456000 9219900 12236000 0 0 0 0 0 0 0 0 0 0 0 0 21117000 9097600 12019000 339210 122290 216910 2119 635 2211 10960;10961;10962 11240;11241;11242 11242 3 ALQEGEGDLSISADR HSYGKLVPEAVGDQKALQEGEGDLSISADR ALQEGEGDLSISADRLSEKRSPNDFALWKA K A L D R L 2 1 0 2 0 1 2 2 0 1 2 0 0 0 0 2 0 0 0 0 0 0 15 0 1559.7427 P49589;B4DKY1 P49589 296 310 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 5.196E-10 108.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99931 0.86129 6.1 3 Plateau 0.99054 0.9374 NaN 1 0 Median 0.96195 0.83273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99931 0.86129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24154000 11346000 12808000 8305700 3796700 4508900 4971600 2511900 2459700 0 0 0 10876000 5037000 5839300 0 0 0 0 0 0 2120 2386 2212 10963;10964;10965;10966 11243;11244;11245;11246;11247;11248;11249;11250;11251 11243 9 ALQELLR IIKEVNGQPVGSDPRALQELLRN_______ QPVGSDPRALQELLRN______________ R A L L R N 1 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 841.50215 E5RI47;B4DZ84;D3DX48;A0A0A0MRU0;A0A0D9SFF8;D3DX49;A0A0C4DH75;Q14168 E5RI47 182 188 MPP2 MAGUK p55 subfamily member 2 yes no 2 0.017766 64.776 By MS/MS By matching 1 1 0.89361 0.83867 0.86579 2 Median 0.84801 0.84382 NaN 1 0 Median 0.94166 0.83355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3312700 1531000 1781700 2912700 1322300 1590400 400030 208770 191260 0 0 0 0 0 0 0 0 0 0 0 0 2121 172 2213 10967;10968 11252 11252 1 ALQEWLLK VRPPKAPEDFSQNWKALQEWLLKQKSQAPE DFSQNWKALQEWLLKQKSQAPEKPLVISQM K A L L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 8 0 999.57532 Q9GZR2 Q9GZR2 72 79 REXO4 RNA exonuclease 4 yes yes 2 0.052986 50.966 By MS/MS 1 1.157 1.1041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.157 1.1041 NaN 1 1 Median NaN NaN NaN 0 0 Median 9885600 5129500 4756100 0 0 0 0 0 0 0 0 0 0 0 0 9885600 5129500 4756100 0 0 0 2122 3912 2214 10969 11253 11253 1 ALQFLEEVK HPRIITEGFEAAKEKALQFLEEVKVSREMD EAAKEKALQFLEEVKVSREMDRETLIDVAR K A L V K V 1 0 0 0 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1075.5914 P40227 P40227 130 138 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.00050769 119.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 3 1 3 1.1632 1.0134 32.559 16 Median 1.1427 1.056 18.531 3 0 Plateau 1.1942 1.0134 17.851 4 0 Median 1.1979 1.224 5.8798 2 0 Median 1.3123 1.1276 13.021 3 0 Median 1.5004 1.4311 NaN 1 1 Median 1.0073 0.82528 51.587 3 0 Median 169410000 76126000 93285000 88501000 40027000 48475000 50780000 22077000 28702000 22055000 10194000 11861000 2721800 1182500 1539300 3527100 1397400 2129700 1825800 1248600 577180 2123 2285 2215 10970;10971;10972;10973;10974;10975;10976;10977;10978;10979;10980;10981;10982;10983;10984;10985 11254;11255;11256;11257;11258;11259;11260;11261;11262 11255 9 ALQFPPEGWLR IFICHANVIRYIVCRALQFPPEGWLRLSLN IVCRALQFPPEGWLRLSLNNGSITHLVIRP R A L L R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 2 0 0 1 0 0 0 0 11 0 1312.6928 Q96HS1;F5GXG4 Q96HS1 241 251 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.011042 38.293 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.77283 0.7471 57.301 5 Median 0.72979 0.70838 NaN 1 0 Median 0.52714 0.4488 NaN 1 0 Median 0.77283 0.7471 NaN 1 0 Median 2.332 1.9617 NaN 1 0 Median 1.246 1.291 NaN 1 0 Median NaN NaN NaN 0 0 Median 3460100 2240700 1219400 1579600 948410 631190 796420 683960 112460 612840 396100 216740 88499 30351 58148 382730 181870 200850 0 0 0 2124 3669 2216 10986;10987;10988;10989;10990 11263;11264 11263 2 ALQGASQIIAEIR EDMAQRRKEAADMLKALQGASQIIAEIRET LKALQGASQIIAEIRETHLW__________ K A L I R E 3 1 0 0 0 2 1 1 0 3 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1368.7725 O00429 O00429 719 731 DNM1L Dynamin-1-like protein yes yes 2 7.5519E-07 137.17 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0958 0.94691 21.092 5 Median 0.93917 0.88836 NaN 1 0 Median 1.0364 0.89385 8.1552 2 0 Median 1.369 1.4382 NaN 1 0 Median 1.1597 0.9923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30723000 14986000 15738000 17948000 9381700 8565900 7477800 3595500 3882300 4610400 1721300 2889100 687550 287140 400410 0 0 0 0 0 0 2125 1463 2217 10991;10992;10993;10994;10995 11265;11266;11267;11268 11267 4 ALQGQISSQQVAVEK AVDPKNLQRQLEETKALQGQISSQQVAVEK ALQGQISSQQVAVEKLKKTAEVLLDARGSL K A L E K L 2 0 0 0 0 4 1 1 0 1 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1584.8471 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;H0YC82 E9PHM6 2005 2019 DST Dystonin yes no 2 6.6412E-14 176.18 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1331 1.1031 10.355 4 Median 1.0156 1.018 NaN 1 0 Median 1.1587 1.0273 NaN 1 0 Median 1.1081 1.1844 NaN 1 0 Median 1.3109 1.2526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39396000 17739000 21657000 13384000 5625100 7758700 12245000 5839900 6405600 12273000 5645200 6627300 1494000 628490 865520 0 0 0 0 0 0 2126 934 2218 10996;10997;10998;10999 11269;11270;11271;11272;11273;11274 11272 6 ALQGSLGGVEK DAQLLTVQKLEEKERALQGSLGGVEKELTL EKERALQGSLGGVEKELTLRSQALELNKRK R A L E K E 1 0 0 0 0 1 1 3 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1057.5768 O75150;H3BP71;A0A087WTK2 O75150 837 847 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.00053328 91.584 By matching By MS/MS By MS/MS 1 1 1 1.8036 1.8647 47.859 3 Plateau 0.73539 0.74462 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8036 1.939 NaN 1 1 Median 1.4065 1.1861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9549300 3591000 5958300 958690 542360 416320 0 0 0 6965700 2339800 4625900 1624800 708830 916020 0 0 0 0 0 0 2127 1648 2219 11000;11001;11002 11275;11276 11275 2 ALQHMAAMSSAQIVSATAIHNK RDFHSKLKDQTAKDKALQHMAAMSSAQIVS MSSAQIVSATAIHNKLGLPGIPRPTFPGAP K A L N K L 6 0 1 0 0 2 0 0 2 2 1 1 2 0 0 3 1 0 0 1 0 0 22 0 2279.1515 H0YE88;P28347;H0YEJ9;E9PKB7 H0YE88 118 139 TEAD1 Transcriptional enhancer factor TEF-1 yes no 3 7.1368E-13 79.467 By MS/MS By matching By matching 1 1 1 1.1863 1.0576 22.636 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83616 0.81307 NaN 1 0 Median 1.1863 1.0576 NaN 1 0 Median 1.3382 1.2759 NaN 1 0 Median NaN NaN NaN 0 0 Median 14069000 6531800 7537400 0 0 0 0 0 0 8521400 4202000 4319400 1756600 867860 888710 3791200 1462000 2329200 0 0 0 2128 1178 2220 11003;11004;11005 11277;11278 11278 2 ALQHMTDFAIQFNK HRQGHIYMEMNFTNKALQHMTDFAIQFNKN KALQHMTDFAIQFNKNSFGVIPSTPLAIHT K A L N K N 2 0 1 1 0 2 0 0 1 1 1 1 1 2 0 0 1 0 0 0 0 0 14 0 1662.8188 A0A087X253;P63010 A0A087X253 722 735 AP2B1 AP-2 complex subunit beta yes no 3 0.025439 30.176 By MS/MS 1 0.84317 0.81801 NaN 1 Median 0.84317 0.81801 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7999600 4573900 3425700 7999600 4573900 3425700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2129 128 2221 11006 11279 11279 1 ALQHSYLHKDEGNPE EMLTFNPHKRISAFRALQHSYLHKDEGNPE ALQHSYLHKDEGNPE_______________ R A L P E - 1 0 1 1 0 1 2 1 2 0 2 1 0 0 1 1 0 0 1 0 0 0 15 1 1736.8118 P11802;F8VZ13 P11802 289 303 CDK4 Cyclin-dependent kinase 4 yes no 3;4 0.015246 22.991 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 2 0.96815 0.84924 13.621 10 Median 0.96123 0.91485 14.377 2 0 Median 1.0018 0.841 5.23 2 0 Median 1.0073 0.97453 5.2467 2 0 Median 1.0684 0.90268 13.863 2 0 Median NaN NaN NaN 0 0 Median 0.8538 0.70667 0.10837 2 0 Median 27819000 13550000 14269000 11871000 6169100 5701500 7795600 3404300 4391300 3335200 1664800 1670400 3833300 1851100 1982200 0 0 0 984450 460480 523980 2130 1971 2222 11007;11008;11009;11010;11011;11012;11013;11014;11015;11016 11280;11281;11282;11283;11284;11285 11284 6 ALQIPEVYLR EHIQRLSKVVTANHRALQIPEVYLREAPWP TANHRALQIPEVYLREAPWPSAQSEIRTIS R A L L R E 1 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 0 0 1 1 0 0 10 0 1200.6867 Q14C86;F8W9S7 Q14C86 1361 1370 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.0013651 84.476 By MS/MS By MS/MS By matching 3 1 1 1.0335 0.87038 49.772 5 Median 0.58663 0.5828 49.662 3 1 Median 1.5141 1.295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.067 0.87038 NaN 1 0 Median 19153000 9738000 9414500 14026000 7492400 6533800 4699000 2025100 2673900 0 0 0 0 0 0 0 0 0 427290 220470 206820 2131 2907 2223 11017;11018;11019;11020;11021 11286;11287;11288;11289 11286 4 ALQISEEIQGER LFSKQPSQAQRMYEKALQISEEIQGERHPQ YEKALQISEEIQGERHPQTIVLMSDLATTL K A L E R H 1 1 0 0 0 2 3 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1371.6994 Q6DKK2;K7EKH7 Q6DKK2 263 274 TTC19 Tetratricopeptide repeat protein 19, mitochondrial yes no 2 0.046499 44.309 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2132 3134 2224 11022 11290 11290 1 ALQIVYGIR YPNPKPEVLHMIYMRALQIVYGIRLEHFYM HMIYMRALQIVYGIRLEHFYMMPVNSEVMY R A L I R L 1 1 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1031.6128 B1AQT4;E9PP32;E9PQC4;Q9BZD4;E9PKH1;B1AQT3 B1AQT4 52 60 NUF2 Kinetochore protein Nuf2 yes no 2 0.00067915 105.12 By matching By matching By MS/MS By matching 1 1 1 1 1.0849 1.1006 13.822 4 Median 1.1238 1.098 NaN 1 0 Median 1.3846 1.2209 NaN 1 0 Median 1.0473 1.1032 NaN 1 0 Median 1.0031 0.87976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4823200 2375000 2448200 2244000 1119900 1124000 580870 244750 336120 1746800 876930 869890 251520 133350 118170 0 0 0 0 0 0 2133 579 2225 11023;11024;11025;11026 11291;11292 11291 2 ALQKRVEDEQK LIEETPIGSIKDKVKALQKRVEDEQKGRSK DKVKALQKRVEDEQKGRSKLPIRVKGKEDV K A L Q K G 1 1 0 1 0 2 2 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 11 2 1342.7205 I6L894;Q01484 I6L894 1739 1749 ANK2 Ankyrin-2 yes no 2 0.030654 41.029 By MS/MS By matching 1 1 1.3052 1.3206 153.75 2 Median 0.39174 0.44527 NaN 1 0 Median 4.3486 3.9169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7598700 5190300 2408400 7082200 5076300 2005800 516560 113940 402610 0 0 0 0 0 0 0 0 0 0 0 0 2134 1297 2226 11027;11028 11293 11293 1 ALQLAQRPVSLLASPWTSPTWLK LPEEDTKLKIPLIHRALQLAQRPVSLLASP VSLLASPWTSPTWLKTNGAVNGKGSLKGQP R A L L K T 3 1 0 0 0 2 0 0 0 0 5 1 0 0 3 3 2 2 0 1 0 0 23 1 2562.4322 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 116 138 GBA Glucosylceramidase yes no 3 0.0074716 22.123 By MS/MS 1 0.51314 0.47364 NaN 1 Median NaN NaN NaN 0 0 Median 0.51314 0.47364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1002200 628450 373780 0 0 0 1002200 628450 373780 0 0 0 0 0 0 0 0 0 0 0 0 2135 281 2227 11029 11294 11294 1 ALQLEEER KTKKAERELSEQIQRALQLEEERKRAQEEA LSEQIQRALQLEEERKRAQEEAERLEADRM R A L E R K 1 1 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 986.50327 P15311;E7EQR4 P15311 372 379 EZR Ezrin yes no 2 4.8925E-06 166.05 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1447 1.0808 6.2038 6 Median 1.1354 1.0759 6.5563 2 0 Median 1.0612 1.0058 8.0356 2 1 Median 1.1043 1.0997 NaN 1 0 Median 1.2729 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 223770000 100650000 123120000 68088000 31967000 36120000 14360000 6144200 8215400 118080000 52053000 66025000 23241000 10482000 12759000 0 0 0 0 0 0 2136 879 2228 11030;11031;11032;11033;11034;11035 11295;11296;11297;11298;11299 11295 5 ALQLLQMYYEGR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC GSRALQLLQMYYEGRFPCLEEKVLETPQEI R A L G R F 1 1 0 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 2 0 0 0 12 0 1483.7493 Q9H0A0;A0A087WV29 Q9H0A0 644 655 NAT10 N-acetyltransferase 10 yes no 2 6.3504E-06 98.249 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1.0513 1.1201 10.988 6 Median NaN NaN NaN 0 0 Median 1.3627 1.1612 NaN 1 0 Median 0.98939 1.0701 14.569 2 0 Median 1.4151 1.2087 NaN 1 0 Median 0.9718 1.0045 10.309 2 0 Median NaN NaN NaN 0 0 Median 13617000 6179800 7437100 0 0 0 3326800 1388100 1938700 6198300 3051100 3147200 847110 360390 486720 3244600 1380200 1864400 0 0 0 2137 3921 2229 11036;11037;11038;11039;11040;11041 11300;11301;11302;11303;11304;11305;11306 11301 7 ALQLSEPGKEIH FSAYLGSEQYKLLIKALQLSEPGKEIH___ LIKALQLSEPGKEIH_______________ K A L I H - 1 0 0 0 0 1 2 1 1 1 2 1 0 0 1 1 0 0 0 0 0 0 12 1 1320.7038 Q9H061 Q9H061 184 195 TMEM126A Transmembrane protein 126A yes yes 2;3 1.6989E-05 111.46 By MS/MS By MS/MS 2 1 1.1665 1.0939 14.335 3 Median 1.0287 0.97204 17.832 2 0 Median 1.266 1.0939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16937000 8006800 8930100 14941000 7072400 7868500 1996100 934400 1061700 0 0 0 0 0 0 0 0 0 0 0 0 2138 3918 2230 11042;11043;11044 11307;11308;11309;11310;11311 11307 5 ALQPIVSEEEWAHTK LPVPPLQQSLDHYLKALQPIVSEEEWAHTK ALQPIVSEEEWAHTKQLVDEFQASGGVGER K A L T K Q 2 0 0 0 0 1 3 0 1 1 1 1 0 0 1 1 1 1 0 1 0 0 15 0 1736.8733 P43155;B7ZBP5;A6PVN3 P43155 53 67 CRAT Carnitine O-acetyltransferase yes no 3 0.0024937 31.389 By MS/MS By MS/MS By matching 1 1 1 0.71486 0.68639 50.088 3 Median 0.71486 0.68639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52825 0.54835 NaN 1 0 Median 1.6699 1.4289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12035000 6448500 5586900 4079800 1673200 2406600 0 0 0 6554700 4205300 2349300 1400900 569970 830970 0 0 0 0 0 0 2139 2323 2231 11045;11046;11047 11312;11313;11314 11312 3 ALQQEQEIEQR LKVEHTSRLKAAFVKALQQEQEIEQRLLQQ AFVKALQQEQEIEQRLLQQGTAPAQAKAEP K A L Q R L 1 1 0 0 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1370.679 A0A0U1RRM1;Q8WXI9;A0A0U1RR30;Q86YP4 Q86YP4 465 475 GATAD2B;GATAD2A Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha no no 2 7.3992E-31 215.38 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 4 1.1765 1.0102 22.479 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94285 0.95003 32.415 5 0 Median 1.2975 1.0832 18.264 4 0 Median 1.1171 1.1317 23.596 2 0 Median 1.2486 1.0129 19.342 4 0 Median 73098000 33972000 39125000 0 0 0 0 0 0 40732000 19222000 21509000 11031000 4738400 6292400 13519000 6389400 7129900 7816100 3622100 4194000 2140 3309;311 2232 11048;11049;11050;11051;11052;11053;11054;11055;11056;11057;11058;11059;11060;11061;11062 11315;11316;11317;11318;11319;11320;11321;11322;11323;11324;11325;11326;11327 11324 13 ALQQFLYVQMAK QVQEWNRQRTMAIERALQQFLYVQMAKELK IERALQQFLYVQMAKELKNKLLAEAKEYVI R A L A K E 2 0 0 0 0 3 0 0 0 0 2 1 1 1 0 0 0 0 1 1 0 0 12 0 1438.7643 Q7KZ85 Q7KZ85 716 727 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0079766 57.859 By MS/MS By MS/MS 1 1 1.1142 1.1547 15.246 2 Median 1.0759 1.0367 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1539 1.2862 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6324400 3130300 3194000 3523000 1744100 1778800 0 0 0 2801400 1386200 1415200 0 0 0 0 0 0 0 0 0 2141 3213 2233 11063;11064 11328;11329 11328 2 ALQQGLVGLELK GLVDLARGQLLPVSKALQQGLVGLELKEKL VSKALQQGLVGLELKEKLLAAERATTGYPD K A L L K E 1 0 0 0 0 2 1 2 0 0 4 1 0 0 0 0 0 0 0 1 0 0 12 0 1267.75 P58107;A0A075B730 P58107 98 109 EPPK1 Epiplakin yes no 2 0.00020244 85.533 By MS/MS By MS/MS By MS/MS 2 1 1 1.2733 1.2774 7.964 3 Median 1.3152 1.2927 1.6809 2 0 Median 1.2711 1.1279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37487000 16512000 20975000 24780000 10737000 14043000 12707000 5775300 6932000 0 0 0 0 0 0 0 0 0 0 0 0 2142 2520 2234 11065;11066;11067;11068 11330;11331;11332;11333;11334;11335 11331 6 ALQQNFLAMAAQLPMSIR KMALVADEQQRLMQRALQQNFLAMAAQLPM QNFLAMAAQLPMSIRINSQASESRQDSAVN R A L I R I 4 1 1 0 0 3 0 0 0 1 3 0 2 1 1 1 0 0 0 0 0 0 18 0 2002.0492 Q99856 Q99856 477 494 ARID3A AT-rich interactive domain-containing protein 3A yes yes 3 5.9105E-05 43.794 By matching By MS/MS 1 1 0.88449 0.90802 1.3016 2 Median 0.89974 0.8997 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8695 0.91642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4123300 2072700 2050600 175780 99149 76636 0 0 0 3947600 1973600 1974000 0 0 0 0 0 0 0 0 0 2143 3772 2235 11069;11070 11336;11337 11337 2 ALQQNGAPGIAK NFWYHSYTKGKRLPRALQQNGAPGIAKVKA LPRALQQNGAPGIAKVKAN___________ R A L A K V 3 0 1 0 0 2 0 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1166.6408 Q9BW60 Q9BW60 264 275 ELOVL1 Elongation of very long chain fatty acids protein 1 yes yes 2 0.00061464 67.897 By MS/MS 1 1.1443 0.9977 NaN 1 Median NaN NaN NaN 0 0 Median 1.1443 0.9977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4124900 1722400 2402500 0 0 0 4124900 1722400 2402500 0 0 0 0 0 0 0 0 0 0 0 0 2144 3863 2236 11071 11338;11339 11338 2 ALQQVIQDYTTPPNEELSR GLVSGSNARCIALLRALQQVIQDYTTPPNE VIQDYTTPPNEELSRDLVNKLKPYMSFLTQ R A L S R D 1 1 1 1 0 3 2 0 0 1 2 0 0 0 2 1 2 0 1 1 0 0 19 0 2201.0964 A0A087WTA5;E7ERK9;Q9UI10;H7C2L8 A0A087WTA5 229 247 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 4.0513E-08 82.362 By MS/MS By matching By matching 1 1 1 0.82636 0.83818 6.2067 3 Median 0.77248 0.77176 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82636 0.87152 NaN 1 0 Median 0.97654 0.83818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4436900 2372600 2064300 2672300 1503000 1169300 0 0 0 1518900 729680 789190 245710 139900 105810 0 0 0 0 0 0 2145 16 2237 11072;11073;11074 11340 11340 1 ALQQVQEK RQQNELAELHANLARALQQVQEKEVRAQKL LHANLARALQQVQEKEVRAQKLADDLSTLQ R A L E K E 1 0 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 942.51345 A0A087WY61;Q14980 Q14980 884 891 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0071131 68.422 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.021 0.98008 4.8907 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95247 1.0566 NaN 1 0 Median 1.0945 0.99079 NaN 1 0 Median 0.88976 0.9417 NaN 1 0 Median 1.1278 0.96949 NaN 1 0 Median 4240500 2016500 2224000 0 0 0 0 0 0 1237800 568820 669000 108480 49455 59030 2191700 1089900 1101800 702500 308360 394140 2146 2905;77 2238 11075;11076;11077;11078 11341;11342;11343;11344 11344 4 ALQQVQEKEVR RQQNELAELHANLARALQQVQEKEVRAQKL NLARALQQVQEKEVRAQKLADDLSTLQEKM R A L V R A 1 1 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 11 1 1326.7256 A0A087WY61;Q14980 Q14980 884 894 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 0.00050744 110.14 By MS/MS By MS/MS By MS/MS 1 3 2 1.0601 1.125 22.553 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5372 1.8238 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0038 1.1372 7.4495 3 2 Median 1.1753 1.044 9.0544 2 0 Median 20946000 10607000 10339000 0 0 0 0 0 0 782660 302430 480230 0 0 0 17668000 9219200 8448600 2495300 1085500 1409800 2147 2905;77 2239 11079;11080;11081;11082;11083;11084 11345;11346;11347;11348;11349;11350 11348 6 ALQQYTLEPSEKPFDLK YILNGLTVSIPGLERALQQYTLEPSEKPFD QQYTLEPSEKPFDLKSVPLATAPMAEQRTE R A L L K S 1 0 0 1 0 2 2 0 0 0 3 2 0 1 2 1 1 0 1 0 0 0 17 1 2006.0361 Q9Y678 Q9Y678 561 577 COPG1 Coatomer subunit gamma-1 yes yes 3 0.00025797 53.828 By MS/MS By MS/MS 3 1 0.67292 0.7657 8.4708 3 Median 0.68582 0.71256 10.173 2 1 Median NaN NaN NaN 0 0 Median 0.67292 0.76996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19152000 11220000 7932400 16388000 9508500 6879400 0 0 0 2764100 1711100 1053000 0 0 0 0 0 0 0 0 0 2148 4481 2240 11085;11086;11087;11088 11351;11352;11353;11354 11351 4 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK GARGKGRTQLSLLPRALQRPSAAAPQAENG AAPAVAAPAATEAPKMSNADFAKLFLRK__ R A L P K M 14 1 1 0 0 2 2 1 0 0 1 1 0 0 6 1 1 0 0 1 0 0 32 1 2964.5417 A0A499FI31;Q15020 A0A499FI31 937 968 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 9.9228E-10 47.395 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.39398 0.42449 33.312 4 Median 0.2862 0.29794 NaN 1 1 Median 0.6313 0.60066 NaN 1 0 Median 0.30394 0.34454 NaN 1 0 Median 0.51069 0.52299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23444000 17236000 6208400 6281700 5239400 1042300 1500400 670800 829640 13267000 10042000 3225400 2394800 1283700 1111100 0 0 0 0 0 0 2149 473 2241 11089;11090;11091;11092 11355;11356 11356 2 ALQSGPPQSR IQEILTQVKQHQQQKALQSGPPQSRRK___ HQQQKALQSGPPQSRRK_____________ K A L S R R 1 1 0 0 0 2 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 10 0 1039.5411 O00425 O00425 568 577 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.047167 44.318 By MS/MS 1 1.3978 1.2083 NaN 1 Median NaN NaN NaN 0 0 Median 1.3978 1.2083 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1145100 525940 619120 0 0 0 1145100 525940 619120 0 0 0 0 0 0 0 0 0 0 0 0 2150 1462 2242 11093 11357 11357 1 ALQSPALGLR IDLALEQGDALALFRALQSPALGLRGLQQQ LALFRALQSPALGLRGLQQQNSDWYLKQLL R A L L R G 2 1 0 0 0 1 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 10 0 1024.6029 P46940;A0A0J9YXZ5 P46940 327 336 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.3237E-05 150.84 By MS/MS By MS/MS 1 2 1.5207 1.2524 28.872 3 Plateau 1.6664 1.5639 NaN 1 0 Median 1.1118 0.9553 6.8787 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31049000 13026000 18022000 16905000 6224200 10681000 14144000 6802200 7341400 0 0 0 0 0 0 0 0 0 0 0 0 2151 2350 2243 11094;11095;11096 11358;11359;11360;11361;11362;11363 11359 6 ALQSQSWK GIRLYLQELITITQKALQSQSWKMKAQGAI LITITQKALQSQSWKMKAQGAIAMASIAKQ K A L W K M 1 0 0 0 0 2 0 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 8 0 946.48723 Q5VYK3;J3KN16;F6XAQ5 Q5VYK3 1535 1542 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0071131 68.422 By matching By MS/MS 1 1 0.86767 0.79265 17.809 2 Median 0.73444 0.69887 NaN 1 0 Median 1.0251 0.89902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2179000 1121200 1057800 780370 467030 313340 1398600 654150 744460 0 0 0 0 0 0 0 0 0 0 0 0 2152 3116 2244 11097;11098 11364 11364 1 ALQSVGQIVGEVLK KELTKQYEKSENDLKALQSVGQIVGEVLKQ KALQSVGQIVGEVLKQLTEEKFIVKATNGP K A L L K Q 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 14 0 1439.8348 A0A087X2I1;P62333;H0YJC0;H0YJE9;H0YJT1 A0A087X2I1 63 76 PSMC6 26S protease regulatory subunit 10B yes no 2 0.00041385 70.977 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 3 1.1491 0.97721 21.524 11 Median 1.0123 0.9564 16.441 2 0 Median 1.0178 0.89563 11.106 4 0 Median 1.3199 1.4359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5723 1.552 NaN 1 0 Median 1.2785 1.0754 6.9654 3 0 Plateau 274430000 130160000 144270000 20981000 9814000 11167000 247460000 117740000 129720000 2863800 1211900 1651800 0 0 0 1275200 518610 756560 1852600 875150 977470 2153 138 2245 11099;11100;11101;11102;11103;11104;11105;11106;11107;11108;11109 11365;11366;11367;11368;11369;11370;11371;11372;11373;11374 11373 10 ALQTQAPQQIPR AAAAAAVPPPHPNIRALQTQAPQQIPRGPV NIRALQTQAPQQIPRGPVQQPLEDRIFTPA R A L P R G 2 1 0 0 0 4 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 12 0 1349.7415 A0A0U1RQK7 A0A0U1RQK7 92 103 yes yes 2 0.0028628 47.603 By MS/MS 1 0.70502 0.59205 NaN 1 Median NaN NaN NaN 0 0 Median 0.70502 0.59205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1795000 1083400 711610 0 0 0 1795000 1083400 711610 0 0 0 0 0 0 0 0 0 0 0 0 2154 300 2246 11110 11375;11376 11375 2 ALQVMEK YHNMPLIWKPGYLDRALQVMEKVAASPEDI WKPGYLDRALQVMEKVAASPEDIKLCREAL R A L E K V 1 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 7 0 817.43677 G5EA06;Q92552;D6RH20 G5EA06 203 209 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.030589 73.039 By MS/MS 2 1.2514 1.0764 NaN 1 Median NaN NaN NaN 0 0 Median 1.2514 1.0764 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3327400 1239300 2088100 0 0 0 3327400 1239300 2088100 0 0 0 0 0 0 0 0 0 0 0 0 2155 1131 2247 11111;11112 11377;11378 11377 2 ALRDFLR PRFHQLDIDDLQSIRALRDFLRKEYGGLDV IDDLQSIRALRDFLRKEYGGLDVLVNNAGI R A L L R K 1 2 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 1 889.51339 O75828;P16152;E9PQ63;A8MTM1 P16152 72 78 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 no no 2 0.060188 77.741 By MS/MS By matching By matching 1 1 2 0.98002 1.0368 24.683 4 Median 1.093 1.1767 NaN 1 0 Median 0.78896 0.67004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98002 1.0368 1.4992 2 0 Median NaN NaN NaN 0 0 Median 23623000 11265000 12358000 13580000 6382800 7197100 3515200 1522900 1992300 0 0 0 0 0 0 6528100 3359500 3168600 0 0 0 2156 2025;1699 2248 11113;11114;11115;11116 11379;11380 11379 2 ALRETLPAEQDLTTK FMECNLNELVKHGLRALRETLPAEQDLTTK ALRETLPAEQDLTTKNVSIGIVGKDLEFTI R A L T K N 2 1 0 1 0 1 2 0 0 0 3 1 0 0 1 0 3 0 0 0 0 0 15 1 1684.8996 P25786;F5GX11 P25786 194 208 PSMA1 Proteasome subunit alpha type-1 yes no 3 7.8374E-05 71.545 By MS/MS By MS/MS By matching 1 1 1 1.0933 1.0118 14.893 3 Median 0.84996 0.85362 NaN 1 0 Median 1.0933 1.0118 NaN 1 0 Median 1.1198 1.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21099000 11466000 9632600 11572000 6446000 5125600 8009900 4224500 3785500 1517100 795610 721500 0 0 0 0 0 0 0 0 0 2157 2136 2249 11117;11118;11119 11381;11382;11383 11382 3 ALRPDMGYNTLANFR QGMQGPPVPQFQPQKALRPDMGYNTLANFR ALRPDMGYNTLANFRIEKKIGRGQFSEVYR K A L F R I 2 2 2 1 0 0 0 1 0 0 2 0 1 1 1 0 1 0 1 0 0 0 15 1 1737.8621 Q8TDX7;F5H3U7;F8WAG2 Q8TDX7 21 35 NEK7 Serine/threonine-protein kinase Nek7 yes no 3 7.937E-05 71.344 By MS/MS By MS/MS 1 1 0.69879 0.74074 16.357 2 Median 0.61291 0.65983 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79671 0.83157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12102000 7304900 4796800 8927200 5676700 3250500 0 0 0 3174500 1628200 1546300 0 0 0 0 0 0 0 0 0 2158 3474 2250 11120;11121 11384;11385;11386 11384 3 ALRQEFAASR IIVMGVQVVGRAFARALRQEFAASRAAADA RAFARALRQEFAASRAAADARGRAGHRSAA R A L S R A 3 2 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 1 1147.6098 A0A0A6YYL4;I3L1U7;I3L0X9;I3L3T0;Q9Y3D7 A0A0A6YYL4 946 955 CORO7-PAM16;PAM16 Coronin;Mitochondrial import inner membrane translocase subunit TIM16 yes no 2 0.0069178 65.305 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1.1721 1.2191 7.6211 6 Median 1.067 1.0912 2.3175 2 0 Median 1.4609 1.2456 NaN 1 0 Median 1.1406 1.2387 NaN 1 0 Median 1.4595 1.1998 NaN 1 0 Median 1.2044 1.3137 NaN 1 0 Median NaN NaN NaN 0 0 Median 26439000 12175000 14264000 11270000 5676400 5593900 10255000 4337000 5918300 3537300 1547100 1990200 411290 190310 220980 964810 424030 540780 0 0 0 2159 209 2251 11122;11123;11124;11125;11126;11127 11387;11388;11389 11388 3 ALRTDYNASVSVPDSSGPER KNAGAVIGKGGKNIKALRTDYNASVSVPDS YNASVSVPDSSGPERILSISADIETIGEIL K A L E R I 2 2 1 2 0 0 1 1 0 0 1 0 0 0 2 4 1 0 1 2 0 0 20 1 2120.0134 P61978;Q5T6W2 P61978 67 86 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 3 2.5152E-15 83.423 By MS/MS By MS/MS 2 2 0.86275 0.84932 22.076 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61758 0.68545 27.588 2 2 Median 1.0073 0.89055 3.9762 2 2 Median 69046000 35226000 33820000 0 0 0 0 0 0 0 0 0 0 0 0 52998000 26592000 26406000 16047000 8634000 7413300 2160 2565;3093 2252 11128;11129;11130;11131 11390;11391;11392;11393 11393 4 ALRYPMAVGLNK ______________________________ ______________________________ M A L N K G 2 1 1 0 0 0 0 1 0 0 2 1 1 0 1 0 0 0 1 1 0 0 12 1 1331.7384 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 2 13 RPL36 60S ribosomal protein L36 yes no 2;3 1.7588E-05 107.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 3 1.0826 1.0258 24.061 11 Median 1.048 1.0263 6.1257 2 0 Median 1.0328 0.91182 15.901 5 2 Median 1.6199 1.6915 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1039 1.2501 2.1939 3 0 Median NaN NaN NaN 0 0 Median 147080000 72447000 74630000 87239000 41078000 46162000 43354000 23593000 19761000 2193500 1075700 1117800 0 0 0 14289000 6700200 7588900 0 0 0 2161 4434 2253;2254 11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142 11394;11395;11396;11397;11398;11399;11400;11401;11402;11403;11404;11405;11406 11395 1982 13 ALSAEAALAR ENTSVVEKLKHMEARALSAEAALARAREDL HMEARALSAEAALARAREDLQKMKQFAQDF R A L A R A 5 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 971.53999 O60678 O60678 169 178 PRMT3 Protein arginine N-methyltransferase 3 yes yes 2 0.00039551 95.741 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 1 1.4229 1.2308 17.792 7 Median 1.4782 1.4128 NaN 1 0 Median 1.4229 1.2308 NaN 1 0 Median 1.2377 1.2189 NaN 1 0 Median 1.6474 1.4553 22.575 3 0 Median NaN NaN NaN 0 0 Median 1.1843 0.95608 NaN 1 0 Median 40991000 18422000 22570000 8992700 4186500 4806300 11756000 5068300 6687500 6995300 3521700 3473700 4197100 1732400 2464800 0 0 0 9050400 3912900 5137500 2162 1625 2255 11143;11144;11145;11146;11147;11148;11149 11407;11408;11409;11410;11411;11412 11410 6 ALSAETESHIYR ______________________________ ______________________________ M A L Y R A 2 1 0 0 0 0 2 0 1 1 1 0 0 0 0 2 1 0 1 0 0 0 12 0 1375.6732 U3KQU4;O14569 U3KQU4 2 13 CYB561D2 Cytochrome b561 domain-containing protein 2 yes no 2;3 1.3907E-06 100.55 By MS/MS By MS/MS By matching 2 2 1 0.98381 0.91353 26.411 5 Median 0.941 0.95365 6.3804 2 0 Median 1.2506 1.0302 16.997 2 0 Median 0.50376 0.5731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19744000 9946500 9797500 4883300 2649700 2233600 13995000 6667200 7327700 865840 629680 236160 0 0 0 0 0 0 0 0 0 2163 1484 2256 11150;11151;11152;11153;11154 11413;11414;11415;11416 11416 4 ALSAIADLLTNEHER WTYGRYIRSALRQEKALSAIADLLTNEHER ALSAIADLLTNEHERVVKAASGALRNLAVD K A L E R V 3 1 1 1 0 0 2 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 15 0 1651.8529 C9JZR2;O60716 C9JZR2 711 725 CTNND1 Catenin delta-1 yes no 2;3 9.4877E-05 64.65 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 4 4 4 2 1 1.1021 1.036 17.599 17 Median 1.2035 1.1647 25.746 3 0 Plateau 1.2108 1.0537 6.5015 3 0 Median 0.90267 0.96173 16.307 4 0 Median 1.0576 0.89862 23.108 4 0 Median 1.0371 1.0825 6.2167 2 0 Median 1.2348 1.0713 NaN 1 0 Median 35555000 17907000 17648000 7406000 3543500 3862500 8659300 4162600 4496700 14843000 7809700 7033000 1518400 799160 719250 2626600 1323900 1302600 501870 268490 233380 2164 732 2257 11155;11156;11157;11158;11159;11160;11161;11162;11163;11164;11165;11166;11167;11168;11169;11170;11171;11172 11417;11418;11419;11420;11421;11422;11423 11417 7 ALSAVSAQAAAAQK QPVPVVKPAVLPGTKALSAVSAQAAAAQKN KALSAVSAQAAAAQKNKLKEPGGGSFRDDD K A L Q K N 7 0 0 0 0 2 0 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 14 0 1285.699 O00268;A0A0G2JRY5;V9GY14 O00268 804 817 TAF4 Transcription initiation factor TFIID subunit 4 yes no 2 2.3579E-08 110.53 By MS/MS By MS/MS 1 1 1.2189 1.1601 19.14 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93606 1.0132 NaN 1 0 Median 1.5872 1.3282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3898300 1801300 2097000 0 0 0 0 0 0 2978400 1476100 1502300 919920 325280 594640 0 0 0 0 0 0 2165 1453 2258 11173;11174 11424;11425;11426;11427;11428 11426 5 ALSEALTELGYK LEFKVYQHQVVANCRALSEALTELGYKIVT NCRALSEALTELGYKIVTGGSDNHLILVDL R A L Y K I 2 0 0 0 0 0 2 1 0 0 3 1 0 0 0 1 1 0 1 0 0 0 12 0 1293.6816 P34896 P34896 337 348 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 2 0.00020783 85.377 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.99675 0.90234 19.693 4 Median 0.74609 0.69815 NaN 1 0 Median 1.1064 0.93768 NaN 1 0 Median 0.89801 0.86834 NaN 1 0 Median 1.2506 1.1232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39269000 19535000 19735000 7638100 4296300 3341800 11626000 5520700 6105100 12090000 6040800 6049300 7915400 3677000 4238300 0 0 0 0 0 0 2166 2227 2259 11175;11176;11177;11178 11429;11430;11431;11432;11433 11432 5 ALSEFAALMNTER LGGFASTQDTTVALKALSEFAALMNTERTN LKALSEFAALMNTERTNIQVTVTGPSSPSP K A L E R T 3 1 1 0 0 0 2 0 0 0 2 0 1 1 0 1 1 0 0 0 0 0 13 0 1451.7079 Q6YHK3 Q6YHK3 1190 1202 CD109 CD109 antigen yes yes 2 0.0022328 66.262 By MS/MS 1 0.73693 0.76858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73693 0.76858 NaN 1 1 Median NaN NaN NaN 0 0 Median 5619500 3071000 2548500 0 0 0 0 0 0 0 0 0 0 0 0 5619500 3071000 2548500 0 0 0 2167 3193 2260 11179 11434 11434 1 ALSEIAGMTLPYDTLDQVR VTPPGLAREDWKIIRALSEIAGMTLPYDTL IAGMTLPYDTLDQVRNRLEEVSPNLVRYDD R A L V R N 2 1 0 2 0 1 1 1 0 1 3 0 1 0 1 1 2 0 1 1 0 0 19 0 2092.0511 P28331;B4DJ81 P28331 625 643 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2;3 1.138E-07 73.466 By MS/MS By MS/MS By MS/MS 3 3 2 0.80519 0.76748 30.084 8 Median 0.82416 0.8205 21.228 3 0 Median 1.4105 1.2817 31.358 3 0 Plateau 0.58469 0.60722 23.207 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10302000 5270700 5031500 7102900 3692100 3410800 1694300 685700 1008600 1505100 892910 612140 0 0 0 0 0 0 0 0 0 2168 2165 2261 11180;11181;11182;11183;11184;11185;11186;11187 11435;11436;11437;11438;11439;11440;11441 11437 7 ALSGTSPDDVQPGPSVGPPSK ESAIVSRPLNPFTAKALSGTSPDDVQPGPS PDDVQPGPSVGPPSKDKDKVLPSFWIPSLT K A L S K D 1 0 0 2 0 1 0 3 0 0 1 1 0 0 5 4 1 0 0 2 0 0 21 0 1991.98 Q9Y314;M0R3B2;A0A075B797 Q9Y314 133 153 NOSIP Nitric oxide synthase-interacting protein yes no 2;3 7.1614E-18 94.551 By MS/MS By MS/MS 2 2 0.4745 0.42547 18.363 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4978 0.47769 2.9691 2 2 Median 0.4234 0.35604 11.79 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22754000 15342000 7412500 0 0 0 0 0 0 12524000 8273300 4251000 10230000 7068600 3161500 0 0 0 0 0 0 2169 4401 2262 11188;11189;11190;11191 11442;11443;11444;11445;11446 11442 5 ALSGTSPDDVQPGPSVGPPSKDKDK ESAIVSRPLNPFTAKALSGTSPDDVQPGPS QPGPSVGPPSKDKDKVLPSFWIPSLTPEAK K A L D K V 1 0 0 4 0 1 0 3 0 0 1 3 0 0 5 4 1 0 0 2 0 0 25 2 2478.2238 Q9Y314;M0R3B2;A0A075B797 Q9Y314 133 157 NOSIP Nitric oxide synthase-interacting protein yes no 3;4 5.7405E-05 37.373 By MS/MS 2 0.29479 0.27906 52.652 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29479 0.27906 52.652 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11716000 9467400 2248200 0 0 0 0 0 0 0 0 0 11716000 9467400 2248200 0 0 0 0 0 0 2170 4401 2263 11192;11193 11447;11448 11448 2 ALSIFNELR SQIAVAYHNIRDIDKALSIFNELRKQDPYR IRDIDKALSIFNELRKQDPYRIENMDTFSN K A L L R K 1 1 1 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1061.5869 Q9UJX2 Q9UJX2 282 290 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.0020081 75.213 By matching By matching By MS/MS By matching 1 1 1 1 0.96935 0.89187 23.481 4 Median 0.60362 0.60729 NaN 1 0 Median 0.9354 0.80672 NaN 1 0 Median 1.0045 1.0073 NaN 1 0 Median 1.1796 0.98601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14074000 6919200 7154500 716130 437960 278170 1428100 716480 711650 10777000 5232800 5543700 1152900 531960 620960 0 0 0 0 0 0 2171 4300 2264 11194;11195;11196;11197 11449;11450 11450 2 ALSINTLVK CLLDKGMMSTVTEVRALSINTLVKISKSAG TVTEVRALSINTLVKISKSAGAMLKPHAPK R A L V K I 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 9 0 957.58588 Q5VYK3;J3KN16 Q5VYK3 1272 1280 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0066328 53.968 By MS/MS By matching By matching By matching 1 2 1 2 1.2064 1.0809 12.08 6 Median 1.0875 1.0508 NaN 1 0 Median 1.3696 1.2004 16.638 2 0 Median NaN NaN NaN 0 0 Median 1.2091 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2063 1.0503 15.429 2 0 Median 20362000 9543500 10818000 12539000 6117100 6421800 7391900 3248600 4143200 0 0 0 97218 37874 59344 0 0 0 333600 139920 193680 2172 3116 2265 11198;11199;11200;11201;11202;11203 11451;11452 11451 2 ALSMYEEAFQNTSDSDR IHLWYLLPPTASISRALSMYEEAFQNTSDS SMYEEAFQNTSDSDRYACSPLPSYLEGSGC R A L D R Y 2 1 1 2 0 1 2 0 0 0 1 0 1 1 0 3 1 0 1 0 0 0 17 0 1962.8265 P52948;H7C3P6;H0YDF4 P52948 1445 1461 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 7.3086E-12 138.94 By MS/MS 1 1.0604 1.1259 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0604 1.1259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10503000 4589500 5913500 0 0 0 0 0 0 10503000 4589500 5913500 0 0 0 0 0 0 0 0 0 2173 2462 2266 11204 11453 11453 1 ALSNLESIPGGYNALR RNPAMMQEMMRNQDRALSNLESIPGGYNAL LSNLESIPGGYNALRRMYTDIQEPMLSAAQ R A L L R R 2 1 2 0 0 0 1 2 0 1 3 0 0 0 1 2 0 0 1 0 0 0 16 0 1673.8737 Q9NRR5;Q9UMX0;H0YDS0 Q9UMX0 258 273 UBQLN4;UBQLN1 Ubiquilin-4;Ubiquilin-1 no no 2 1.5886E-06 89.548 By MS/MS By matching By matching 1 1 1 1.0521 0.91049 9.4899 3 Median 0.89359 0.84538 NaN 1 0 Median 1.0521 0.91049 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2099 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24524000 12211000 12313000 18146000 9107400 9038200 5878700 2887900 2990700 0 0 0 499950 215500 284450 0 0 0 0 0 0 2174 4335;4087 2267 11205;11206;11207 11454;11455 11455 2 ALSNLESIPGGYNALRR RNPAMMQEMMRNQDRALSNLESIPGGYNAL SNLESIPGGYNALRRMYTDIQEPMLSAAQE R A L R R M 2 2 2 0 0 0 1 2 0 1 3 0 0 0 1 2 0 0 1 0 0 0 17 1 1829.9748 Q9NRR5;Q9UMX0;H0YDS0 Q9UMX0 258 274 UBQLN4;UBQLN1 Ubiquilin-4;Ubiquilin-1 no no 3 0.0014294 28.546 By MS/MS 1 0.91287 0.89939 NaN 1 Median 0.91287 0.89939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23223000 11063000 12160000 23223000 11063000 12160000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2175 4335;4087 2268 11208 11456;11457 11457 2 ALSPLEEWLR SSAQDPQAVLGALGRALSPLEEWLRLHTYL GALGRALSPLEEWLRLHTYLAGEAPTLADL R A L L R L 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 1 0 1 0 0 0 0 10 0 1212.6503 P26640;A0A140T936;A0A140T954;A2ABF4;A0A0G2JJT9;A0A140T904 P26640 138 147 VARS Valine--tRNA ligase yes no 2 0.0066679 48.796 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.12 1.0152 17.744 7 Median 0.85199 0.83916 NaN 1 0 Median 0.9574 0.84111 16.649 2 0 Median 1.1206 1.1968 2.3479 2 0 Median 1.2165 1.0471 4.3796 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11244000 5517900 5726400 2254000 1284300 969710 5291600 2581600 2710000 2448000 1109300 1338800 1250600 542770 707840 0 0 0 0 0 0 2176 2148 2269 11209;11210;11211;11212;11213;11214;11215 11458;11459;11460;11461 11460 4 ALSPSDSLEIFTK DQAKTQIGMTESLLKALSPSDSLEIFTKLE LKALSPSDSLEIFTKLEEIQQQILQQKHSM K A L T K L 1 0 0 1 0 0 1 0 0 1 2 1 0 1 1 3 1 0 0 0 0 0 13 0 1406.7293 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1770 1782 SYNE2 Nesprin-2 yes no 2 0.001603 51.092 By MS/MS 1 0.63891 0.68855 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63891 0.68855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4458600 2809800 1648800 0 0 0 0 0 0 4458600 2809800 1648800 0 0 0 0 0 0 0 0 0 2177 3521 2270 11216 11462;11463 11462 2 ALSQGVESVKK VSKGGEKLGRTAAFRALSQGVESVKKEIDD AAFRALSQGVESVKKEIDDSVLGQTGPYRR R A L K K E 1 0 0 0 0 1 1 1 0 0 1 2 0 0 0 2 0 0 0 2 0 0 11 1 1144.6452 O43615;M0QXU7 O43615 178 188 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.015652 38.303 By matching By MS/MS By matching 1 1 1 1.2434 1.1294 19.482 3 Plateau 0.97298 0.90984 NaN 1 0 Median 1.2434 1.1294 NaN 1 0 Median 1.2317 1.3422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1655900 768670 887260 261700 123100 138600 1079600 491940 587620 314670 153630 161040 0 0 0 0 0 0 0 0 0 2178 1577 2271 11217;11218;11219 11464;11465 11464 2 ALSQLAEVEEK AAMLGNSEDHTALSRALSQLAEVEEKIDQL ALSRALSQLAEVEEKIDQLHQEQAFADFYM R A L E K I 2 0 0 0 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1215.6347 O60749;Q13596;H0YK42 O60749 363 373 SNX2;SNX1 Sorting nexin-2;Sorting nexin-1 no no 2 0.00014645 91.584 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1355 0.9979 14.518 4 Median 1.0661 0.98764 NaN 1 0 Median 1.2094 1.0083 NaN 1 1 Median 1.2476 1.2688 NaN 1 0 Median 1.0595 0.90213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95834000 44228000 51606000 54750000 25305000 29445000 27423000 12820000 14603000 10444000 4738100 5705400 3216900 1365200 1851700 0 0 0 0 0 0 2179 1629;2829 2272 11220;11221;11222;11223 11466;11467;11468;11469;11470;11471 11466 6 ALSRQEMQEVQSSR QKYHTINGHNAEVRKALSRQEMQEVQSSRS KALSRQEMQEVQSSRSGRGGNFGFGDSRGG K A L S R S 1 2 0 0 0 3 2 0 0 0 1 0 1 0 0 3 0 0 0 1 0 0 14 1 1647.7999 P22626 P22626 187 200 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 2.3585E-07 126.1 By MS/MS 4 1.2118 1.3022 12.456 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2118 1.3022 12.456 4 0 Median NaN NaN NaN 0 0 Median 69259000 32727000 36532000 0 0 0 0 0 0 0 0 0 0 0 0 69259000 32727000 36532000 0 0 0 2180 2103 2273 11224;11225;11226;11227 11472;11473;11474;11475;11476;11477;11478;11479 11475 8 ALSSEGKPYVTK TENVKSSEEIESAFRALSSEGKPYVTKEEL AFRALSSEGKPYVTKEELYQNLTREQADYC R A L T K E 1 0 0 0 0 0 1 1 0 0 1 2 0 0 1 2 1 0 1 1 0 0 12 1 1278.682 A0A0D9SF54;A0A0D9SFH4;Q13813 Q13813 2415 2426 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.0057684 36.693 By MS/MS By MS/MS By MS/MS 2 2 4 0.84791 0.88713 13.627 8 Median NaN NaN NaN 0 0 Median 0.99029 0.94207 3.9167 2 0 Median 0.71865 0.82392 23.033 2 0 Median 0.83614 0.81342 11.8 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10828000 5617400 5210400 0 0 0 6003200 2813200 3190000 2161000 1234500 926480 2663600 1569700 1093900 0 0 0 0 0 0 2181 264;2838 2274 11228;11229;11230;11231;11232;11233;11234;11235 11480;11481;11482;11483;11484;11485;11486;11487 11482 8 ALSSEGKPYVTKEELYQNLTR TENVKSSEEIESAFRALSSEGKPYVTKEEL KPYVTKEELYQNLTREQADYCVSHMKPYVD R A L T R E 1 1 1 0 0 1 3 1 0 0 3 2 0 0 1 2 2 0 2 1 0 0 21 2 2425.2489 A0A0D9SF54;Q13813 Q13813 2415 2435 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 7.0674E-23 110.77 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 5 2 2 1.0194 1.1094 46.16 15 Median 1.0871 1.1659 17.347 4 0 Median 1.1738 1.2505 5.9629 2 1 Median 0.76839 1.0152 58.441 5 0 Median 1.0882 1.1877 12.79 2 0 Median 1.3457 1.582 62.164 2 1 Median NaN NaN NaN 0 0 Median 351320000 176190000 175130000 90903000 40853000 50050000 29842000 12193000 17648000 200470000 110630000 89846000 1184400 506980 677400 28920000 12012000 16908000 0 0 0 2182 264;2838 2275 11236;11237;11238;11239;11240;11241;11242;11243;11244;11245;11246;11247;11248;11249;11250 11488;11489;11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503 11496 16 ALSSESFER YSMEGVGTDAVIYLKALSSESFERLPVFNK AVIYLKALSSESFERLPVFNKSAWRHYKTT K A L E R L 1 1 0 0 0 0 2 0 0 0 1 0 0 1 0 3 0 0 0 0 0 0 9 0 1024.4825 Q15120 Q15120 360 368 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.00088636 92.439 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1153 1.0359 15.529 4 Median 1.2403 1.2129 NaN 1 0 Median 1.3129 1.1296 NaN 1 0 Median 0.95544 0.95002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.003 0.8648 NaN 1 0 Median 18217000 8440600 9776100 5505400 2329100 3176300 2416500 1078800 1337600 7255900 3689300 3566600 0 0 0 0 0 0 3038900 1343300 1695600 2183 2929 2276 11251;11252;11253;11254 11504;11505;11506;11507 11504 4 ALSSLELSSHLAK ILTSPCSPEIRVYTKALSSLELSSHLAKDL TKALSSLELSSHLAKDLLVLLNEILEQVKD K A L A K D 2 0 0 0 0 0 1 0 1 0 4 1 0 0 0 4 0 0 0 0 0 0 13 0 1354.7456 Q9BPX3 Q9BPX3 853 865 NCAPG Condensin complex subunit 3 yes yes 2;3 0.00027703 61.353 By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 1 1.222 1.078 22.307 6 Median 1.3495 1.3282 NaN 1 0 Median 1.2143 1.0423 NaN 1 0 Median 1.2298 1.2879 NaN 1 0 Median 1.2138 1.0286 11.405 2 0 Median NaN NaN NaN 0 0 Median 0.8448 0.7242 NaN 1 0 Median 10763000 4875800 5887100 3750300 1691700 2058600 1268500 626760 641730 1531400 604320 927070 4039000 1870600 2168400 0 0 0 173730 82456 91278 2184 3778 2277 11255;11256;11257;11258;11259;11260 11508;11509;11510;11511;11512 11511 5 ALSSSADDASLVNASISSSVK ATFCSQRDGDASLNKALSSSADDASLVNAS DDASLVNASISSSVKATSPVKSTTSITDAK K A L V K A 4 0 1 2 0 0 0 0 0 1 2 1 0 0 0 8 0 0 0 2 0 0 21 0 2007.996 Q9NQW6 Q9NQW6 272 292 ANLN Actin-binding protein anillin yes yes 2 1.4143E-18 109.84 By MS/MS By matching 2 2 1.0102 0.97876 30.871 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2494 1.3181 19.396 2 0 Median 0.93586 0.80309 5.2745 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13520000 6472200 7047400 0 0 0 0 0 0 12269000 5859500 6409100 1251000 612780 638240 0 0 0 0 0 0 2185 4069 2278 11261;11262;11263;11264 11513;11514 11513 2 ALSSSVIR EAEREKKRLERAKRRALSSSVIRELKEQYS LERAKRRALSSSVIRELKEQYSDAPEEIRD R A L I R E 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 Q8NEJ9;H0YJ17 Q8NEJ9 200 207 NGDN Neuroguidin yes no 2 0.046986 58.981 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2186 3430 2279 11265;11266 11515;11516 11516 2 ALSTDPAAPNLK KGISMSSSKLLLAAKALSTDPAAPNLKSQL AAKALSTDPAAPNLKSQLAAAARAVTDSIN K A L L K S 3 0 1 1 0 0 0 0 0 0 2 1 0 0 2 1 1 0 0 0 0 0 12 0 1196.6401 Q9Y490 Q9Y490 1321 1332 TLN1 Talin-1 yes yes 2 4.3889E-06 104.01 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 2 0.87373 0.81518 37.586 8 Median 0.694 0.66997 NaN 1 0 Median 0.87373 0.77685 8.8157 2 0 Median 0.7257 0.8037 NaN 1 0 Median 0.76824 0.69422 NaN 1 0 Median 2.0598 2.1632 NaN 1 1 Median 1.0117 0.85082 0.53604 2 0 Median 71892000 38907000 32985000 14121000 8972800 5148600 34811000 18993000 15818000 8650800 4786900 3863900 2986400 1590700 1395700 3984000 1053300 2930700 7338300 3509800 3828500 2187 4441 2280 11267;11268;11269;11270;11271;11272;11273;11274 11517;11518;11519;11520;11521;11522;11523;11524;11525 11520 8 ALSTGEKGFGYK ELFADKVPKTAENFRALSTGEKGFGYKGSC NFRALSTGEKGFGYKGSCFHRIIPGFMCQG R A L Y K G 1 0 0 0 0 0 1 3 0 0 1 2 0 1 0 1 1 0 1 0 0 0 12 1 1256.6401 P62937;F8WE65;C9J5S7 P62937 38 49 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2;3 0.0001957 105.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1758 1.139 11.661 8 Median 1.1662 1.1683 1.3918 2 0 Median 1.4855 1.3135 22.819 2 1 Median 1.138 1.1559 4.2771 2 1 Median 1.2416 1.0787 3.2082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32955000 14639000 18317000 9374800 4253800 5121000 7354000 3168600 4185400 13184000 5774100 7410000 3042400 1442200 1600200 0 0 0 0 0 0 2188 2611 2281 11275;11276;11277;11278;11279;11280;11281;11282 11526;11527;11528;11529;11530;11531;11532;11533;11534;11535;11536;11537 11533 12 ALSTMDLQK GVTKNMAQVTKALDKALSTMDLQKVSSVMD TKALDKALSTMDLQKVSSVMDRFEQQVQNL K A L Q K V 1 0 0 1 0 1 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 9 0 1005.5165 F8VUA2;F8VVT7;Q9HD42;F5H875 F8VUA2 99 107 CHMP1A Charged multivesicular body protein 1a yes no 2 0.0011181 85.064 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1.096 1.0274 18.629 5 Median NaN NaN NaN 0 0 Median 1.0547 0.89938 NaN 1 1 Median 1.096 1.0274 NaN 1 0 Median 1.1109 0.92033 NaN 1 0 Median 1.0105 1.0313 NaN 1 0 Median 1.7214 1.433 NaN 1 0 Median 42398000 18966000 23432000 0 0 0 1328700 680810 647860 16334000 6859800 9474700 3496100 1516500 1979500 18025000 8713800 9311100 3213900 1195500 2018300 2189 1066 2282 11283;11284;11285;11286;11287;11288;11289 11538;11539;11540;11541;11542;11543;11544;11545;11546;11547;11548 11540 11 ALSTTASTAAFDK GVLGHIDSGKTALARALSTTASTAAFDKQP ARALSTTASTAAFDKQPQSRERGITLDLGF R A L D K Q 4 0 0 1 0 0 0 0 0 0 1 1 0 1 0 2 3 0 0 0 0 0 13 0 1282.6405 P57772;C9J8T0 P57772 26 38 EEFSEC Selenocysteine-specific elongation factor yes no 2 3.3165E-05 91.855 By MS/MS By MS/MS 1 1 0.91848 0.87086 12.159 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76306 0.79912 NaN 1 0 Median 1.1056 0.94905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6739400 3838400 2901100 0 0 0 0 0 0 5686300 3246400 2439900 1053100 591960 461130 0 0 0 0 0 0 2190 2519 2283 11290;11291 11549;11550;11551;11552 11550 4 ALSTTASTAAFDKQPQSR GVLGHIDSGKTALARALSTTASTAAFDKQP TTASTAAFDKQPQSRERGITLDLGFSCFSV R A L S R E 4 1 0 1 0 2 0 0 0 0 1 1 0 1 1 3 3 0 0 0 0 0 18 1 1878.9436 P57772;C9J8T0 P57772 26 43 EEFSEC Selenocysteine-specific elongation factor yes no 3 3.8792E-05 47.09 By MS/MS 1 0.49765 0.528 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49765 0.528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4806600 3671400 1135100 0 0 0 0 0 0 4806600 3671400 1135100 0 0 0 0 0 0 0 0 0 2191 2519 2284 11292 11553 11553 1 ALSVGNIDDALQCYSEAIK ______________________________ GNIDDALQCYSEAIKLDPHNHVLYSNRSAA K A L I K L 3 0 1 2 1 1 1 1 0 2 2 1 0 0 0 2 0 0 1 1 0 0 19 0 2065.999 P31948;F5H783;F5GXD8 P31948 14 32 STIP1 Stress-induced-phosphoprotein 1 yes no 2 3.0426E-06 53.967 By MS/MS By MS/MS 1 1 1.1059 1.0095 16.153 2 Median 1.1679 1.1317 NaN 1 0 Median 1.0471 0.90054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4155200 1861000 2294200 1045500 438770 606720 3109700 1422200 1687500 0 0 0 0 0 0 0 0 0 0 0 0 2192 2212 2285 11293;11294 11554;11555 11555 2 ALTAEIVK ENVVHEDFQVTEEVKALTAEIVKTIRDIIA QVTEEVKALTAEIVKTIRDIIALNPLYRES K A L V K T 2 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 0 843.50657 K7EKE6;P36776 K7EKE6 177 184 LONP1 Lon protease homolog, mitochondrial yes no 2 0.028767 60.76 By MS/MS 1 0.34284 0.28966 NaN 1 Median NaN NaN NaN 0 0 Median 0.34284 0.28966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14632000 11319000 3312800 0 0 0 14632000 11319000 3312800 0 0 0 0 0 0 0 0 0 0 0 0 2193 1370 2286 11295 11556 11556 1 ALTDFFR RIFFDDYVACCVKLRALTDFFRKRDHLQQG VACCVKLRALTDFFRKRDHLQQGSANFIYD R A L F R K 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 868.4443 H7C2Z6;H7BXD5;P28676 H7C2Z6 100 106 GCA Grancalcin yes no 2 0.012717 77.748 By MS/MS By matching By matching 1 1 1 1.3296 1.2419 32.948 3 Median 0.89938 0.85087 NaN 1 0 Median 1.9187 1.6404 NaN 1 0 Median 1.3296 1.2419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8263900 4492800 3771100 7205700 4015800 3189900 392280 150560 241720 666000 326490 339510 0 0 0 0 0 0 0 0 0 2194 1242 2287 11296;11297;11298 11557 11557 1 ALTDNNMEFAQISR LVFSTWQDVLDIISKALTDNNMEFAQISRV KALTDNNMEFAQISRVKTFQENLSAFKRDP K A L S R V 2 1 2 1 0 1 1 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 14 0 1608.7566 A0A0D9SFM0;Q149N8 A0A0D9SFM0 1551 1564 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 5.0227E-09 109.6 By MS/MS 1 1.1984 1.3255 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1984 1.3255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937500 2254200 1683300 0 0 0 0 0 0 3937500 2254200 1683300 0 0 0 0 0 0 0 0 0 2195 268 2288 11299 11558;11559 11559 2 ALTDSFR KITFDDYIACCVKLRALTDSFRRRDTAQQG IACCVKLRALTDSFRRRDTAQQGVVNFPYD R A L F R R 1 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 7 0 808.40792 C9J0K6;P30626;B4DHQ6 C9J0K6 125 131 SRI Sorcin yes no 2 0.032882 62.714 By MS/MS 1 1.3085 1.0856 NaN 1 Median NaN NaN NaN 0 0 Median 1.3085 1.0856 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673900 1547900 2126000 0 0 0 3673900 1547900 2126000 0 0 0 0 0 0 0 0 0 0 0 0 2196 669 2289 11300 11560 11560 1 ALTGGIAHLFK LNLDKMMEQKSTAVKALTGGIAHLFKQNKV TAVKALTGGIAHLFKQNKVVHVNGYGKITG K A L F K Q 2 0 0 0 0 0 0 2 1 1 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1126.6499 E9PEX6;P09622 E9PEX6 110 120 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.00045118 69.423 By MS/MS By MS/MS By matching 1 1 1 1.0338 0.95683 13.296 3 Median 1.0338 0.95683 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1428 1.125 NaN 1 0 Median 1.0064 0.86431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24668000 11318000 13350000 14210000 6748800 7461300 0 0 0 8071200 3419400 4651800 2386200 1149700 1236500 0 0 0 0 0 0 2197 915 2290 11301;11302;11303 11561;11562;11563 11562 3 ALTGHLEEVVLALLK YLQETGKPLDETLKKALTGHLEEVVLALLK ALTGHLEEVVLALLKTPAQFDADELRAAMK K A L L K T 2 0 0 0 0 0 2 1 1 0 5 1 0 0 0 0 1 0 0 2 0 0 15 0 1604.9501 P04083;Q5T3N1;Q5T3N0 P04083 99 113 ANXA1 Annexin A1;Annexin yes no 2 6.4241E-07 85.958 By matching By MS/MS 1 4 1.2377 1.0513 21.152 5 Median 1.439 1.399 NaN 1 0 Median 1.221 1.0432 15.459 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 259760000 115890000 143860000 1276900 535160 741700 258480000 115360000 143120000 0 0 0 0 0 0 0 0 0 0 0 0 2198 1844 2291 11304;11305;11306;11307;11308 11564;11565;11566 11566 3 ALTHIDHSLSR VQGKKGEDVLGSVRRALTHIDHSLSRQNCP SVRRALTHIDHSLSRQNCPFLAGETESLAD R A L S R Q 1 1 0 1 0 0 0 0 2 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1248.6575 P56192;F5H2V6 P56192 120 130 MARS Methionine--tRNA ligase, cytoplasmic yes no 2;3 0.00012208 116.52 By MS/MS By MS/MS By MS/MS 4 1 1 1.1409 0.98697 20.672 6 Median NaN NaN NaN 0 0 Median 1.1409 0.98697 17.845 4 1 Median 1.2478 1.338 NaN 1 0 Median 0.96579 0.82303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23220000 10426000 12793000 0 0 0 20489000 9136100 11353000 1367000 581430 785580 1363700 708860 654850 0 0 0 0 0 0 2199 2508 2292 11309;11310;11311;11312;11313;11314 11567;11568;11569;11570;11571;11572 11568 5 ALTHLEMR PVVFVATKDTRALRKALTHLEMRRAARRPN DTRALRKALTHLEMRRAARRPNLPLKVKPT K A L M R R 1 1 0 0 0 0 1 0 1 0 2 0 1 0 0 0 1 0 0 0 0 0 8 0 969.50659 O94776 O94776 619 626 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0098941 77.674 By MS/MS 2 0.92987 0.98497 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92987 0.98497 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3288600 1704000 1584600 0 0 0 0 0 0 3288600 1704000 1584600 0 0 0 0 0 0 0 0 0 2200 1723 2293 11315;11316 11573;11574 11573 2 ALTLGALTLPLAR PQSQELDVQVKDDSRALTLGALTLPLARLL SRALTLGALTLPLARLLTAPELILDQWFQL R A L A R L 3 1 0 0 0 0 0 1 0 0 5 0 0 0 1 0 2 0 0 0 0 0 13 0 1308.8129 Q9BSJ8 Q9BSJ8 551 563 ESYT1 Extended synaptotagmin-1 yes yes 2 1.31E-06 98.249 By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1.1008 0.96081 14.944 9 Median 0.97548 0.94003 10.976 3 0 Median 1.272 1.0902 21.016 4 0 Linear 0.96301 1.0299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2339 0.94766 NaN 1 0 Median 36772000 17639000 19133000 11996000 6304200 5691800 23560000 10749000 12810000 568010 300530 267480 0 0 0 0 0 0 647980 285060 362920 2201 3816 2294 11317;11318;11319;11320;11321;11322;11323;11324;11325 11575;11576;11577;11578;11579;11580 11575 6 ALTLIAGSPLK LERLKNEITRLTTVKALTLIAGSPLKIDLR TTVKALTLIAGSPLKIDLRPVLGEGVPILA K A L L K I 2 0 0 0 0 0 0 1 0 1 3 1 0 0 1 1 1 0 0 0 0 0 11 0 1082.6699 Q86VP6;A0A0C4DGH5 Q86VP6 631 641 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.00011565 133.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 2 2 1.0562 0.9596 25.924 14 Median 0.94049 0.91115 0.67936 2 0 Median 1.1094 0.9596 0.62433 2 0 Median 0.9664 1.0291 11.441 3 1 Median 1.0778 0.93709 8.0548 3 0 Median 1.2183 1.272 80.112 2 2 Median 1.3279 1.1215 18.042 2 0 Median 100540000 49335000 51205000 33507000 16987000 16520000 19752000 9099500 10652000 31983000 16472000 15511000 7557000 3666100 3890900 7076800 2854300 4222500 664290 255740 408540 2202 3288 2295 11326;11327;11328;11329;11330;11331;11332;11333;11334;11335;11336;11337;11338;11339 11581;11582;11583;11584;11585;11586;11587;11588;11589;11590;11591;11592 11581 12 ALTLPGSSENEYIMK EIAPFVEILLTNLFKALTLPGSSENEYIMK ALTLPGSSENEYIMKAIMRSFSLLQEAIIP K A L M K A 1 0 1 0 0 0 2 1 0 1 2 1 1 0 1 2 1 0 1 0 0 0 15 0 1651.8127 P55060 P55060 560 574 CSE1L Exportin-2 yes yes 2 1.7952E-09 103.91 By MS/MS By matching By MS/MS By MS/MS 3 1 2 1 0.94077 0.94426 39.827 7 Median 0.90767 0.87016 9.3801 3 0 Median 0.95157 0.8331 NaN 1 0 Median 0.9191 1.0045 3.9209 2 0 Median NaN NaN NaN 0 0 Median 2.4284 2.5112 NaN 1 0 Median NaN NaN NaN 0 0 Median 80068000 40677000 39392000 66369000 34519000 31849000 640820 317160 323650 9667000 4939900 4727100 0 0 0 3391800 900400 2491400 0 0 0 2203 2493 2296;2297 11340;11341;11342;11343;11344;11345;11346 11593;11594;11595;11596;11597;11598;11599;11600;11601;11602 11595 1174 10 ALTLQDLDNIWAAQAGK VEKLEKILRFVIKEKALTLQDLDNIWAAQA TLQDLDNIWAAQAGKHEAIVKNVHDLLAKL K A L G K H 4 0 1 2 0 2 0 1 0 1 3 1 0 0 0 0 1 1 0 0 0 0 17 0 1826.9527 Q93008;O00507 Q93008 425 441 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 3.2992E-05 51.092 By MS/MS By matching 2 1 1.0495 1.033 7.4733 3 Median 0.99731 0.97606 9.4999 2 0 Median 1.1674 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15928000 7432900 8495200 4714400 2351600 2362800 11214000 5081300 6132400 0 0 0 0 0 0 0 0 0 0 0 0 2204 3573 2298 11347;11348;11349 11603;11604;11605 11605 3 ALTPASLQK FLSQQASLLKNDETKALTPASLQKELNNLL KNDETKALTPASLQKELNNLLKFNPDFAEA K A L Q K E 2 0 0 0 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 0 927.53893 F5H0F9;Q9UJX4;F5GY68;H0YFB5 F5H0F9 230 238 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.016483 42.599 By MS/MS 1 0.80196 0.85234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80196 0.85234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4043700 2368400 1675300 0 0 0 0 0 0 4043700 2368400 1675300 0 0 0 0 0 0 0 0 0 2205 1019 2299 11350 11606;11607 11606 2 ALTPQTAETDAIR EDDAPVIYGLEFQARALTPQTAETDAIRFL ARALTPQTAETDAIRFLVGTQSLKYDNQIH R A L I R F 3 1 0 1 0 1 1 0 0 1 1 0 0 0 1 0 3 0 0 0 0 0 13 0 1385.7151 A8MUM1;Q53HC9;F8WDX0;F8WB12;F8WDS8;C9J0U9;D3YTH5 A8MUM1 17 29 TSSC1 Protein TSSC1 yes no 2 4.7841E-07 116.77 By MS/MS By MS/MS By MS/MS 1 1 1 0.78941 0.73405 6.7137 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69763 0.70001 NaN 1 1 Median 0.89327 0.76973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15368000 7597200 7771000 0 0 0 0 0 0 5255900 2579200 2676700 10112000 5018000 5094300 0 0 0 0 0 0 2206 543 2300 11351;11352;11353 11608;11609;11610 11610 3 ALTQPLGLLR SSSGLGSPMIVGSPRALTQPLGLLRLLQLV VGSPRALTQPLGLLRLLQLVSTCVAFSLVA R A L L R L 1 1 0 0 0 1 0 1 0 0 4 0 0 0 1 0 1 0 0 0 0 0 10 0 1080.6655 A0A494C017;C9JJV6;C9JZL8;A0A499FIY8;C9JC07;Q96S97 A0A494C017 31 40 MYADM Myeloid-associated differentiation marker yes no 2 0.00035038 86.953 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 0.98226 0.99101 24.208 6 Median 0.92646 0.91738 0.99498 2 2 Median 0.99731 0.86365 NaN 1 0 Median 0.96743 1.063 NaN 1 0 Median 1.2758 1.1108 NaN 1 0 Median 1.5695 1.6707 NaN 1 0 Median NaN NaN NaN 0 0 Median 19473000 9651600 9821800 14861000 7402500 7458800 670510 352780 317740 2938500 1434700 1503800 69437 34496 34941 933520 427060 506460 0 0 0 2207 455 2301 11354;11355;11356;11357;11358;11359 11611;11612;11613;11614 11614 4 ALTQTGGPHVK GVFREATTEFSVDARALTQTGGPHVKARVA VDARALTQTGGPHVKARVANPSGNLTETYV R A L V K A 1 0 0 0 0 1 0 2 1 0 1 1 0 0 1 0 2 0 0 1 0 0 11 0 1107.6037 P21333;Q60FE5;A0A087WWY3 P21333 1284 1294 FLNA Filamin-A no no 2 0.00014953 111.95 By matching By MS/MS By matching By matching By matching 2 3 1 1 1 0.86828 0.84328 18.278 8 Median 1.0449 1.0179 4.4692 2 0 Median 0.86069 0.75023 4.6578 3 0 Median 0.8219 0.89372 NaN 1 0 Median 0.85242 0.79568 NaN 1 0 Median 1.1434 1.1878 NaN 1 0 Median NaN NaN NaN 0 0 Median 8693300 4399700 4293600 971060 473880 497180 6813900 3532500 3281300 72345 31042 41303 98444 48589 49855 737600 313640 423950 0 0 0 2208 2088;3120 2302 11360;11361;11362;11363;11364;11365;11366;11367 11615;11616;11617;11618;11619;11620;11621;11622;11623;11624;11625 11620 11 ALTSEIALLQSR STLNSGKKSLETEHKALTSEIALLQSRLKT EHKALTSEIALLQSRLKTEGSDLCDRVSEM K A L S R L 2 1 0 0 0 1 1 0 0 1 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1300.7351 P04843;B7Z4L4 P04843 525 536 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 1.1203E-21 198.25 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 1.2588 1.1982 11.646 11 Median 1.2428 1.2378 15.96 5 0 Median 1.3469 1.1541 12.184 3 0 Median 1.194 1.2295 5.3486 2 0 Median 1.4332 1.1982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 242530000 107950000 134580000 95239000 44865000 50373000 92095000 38139000 53956000 52475000 23809000 28666000 2723100 1135900 1587100 0 0 0 0 0 0 2209 1853 2303 11368;11369;11370;11371;11372;11373;11374;11375;11376;11377;11378 11626;11627;11628;11629;11630;11631;11632;11633;11634;11635;11636 11634 11 ALTSELANAR TTEAEKNERVQKHLKALTSELANARDESKK QKHLKALTSELANARDESKKTANDMIHAEN K A L A R D 3 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1044.5564 P26038 P26038 524 533 MSN Moesin yes yes 2 2.666E-05 144.38 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.1454 1.0133 2.2348 7 Median 1.0539 0.99774 4.203 2 0 Median 1.1551 0.99711 1.3372 2 0 Median 1.029 1.027 NaN 1 0 Median 1.1948 1.0184 0.7089 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257740000 117350000 140390000 48431000 22411000 26020000 82923000 36234000 46688000 93100000 44332000 48769000 33287000 14370000 18917000 0 0 0 0 0 0 2210 2139 2304 11379;11380;11381;11382;11383;11384;11385 11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650 11637 14 ALTSELANARDESK TTEAEKNERVQKHLKALTSELANARDESKK KALTSELANARDESKKTANDMIHAENMRLG K A L S K K 3 1 1 1 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 14 1 1503.7529 P26038 P26038 524 537 MSN Moesin yes yes 2;3 9.3659E-13 181.4 By MS/MS By MS/MS By MS/MS 4 1 2 1.0022 1.0297 9.2616 6 Median 0.97586 0.99127 4.6026 4 0 Median NaN NaN NaN 0 0 Median 1.0949 1.1641 3.8812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90708000 46158000 44550000 51060000 26297000 24763000 0 0 0 39648000 19861000 19788000 0 0 0 0 0 0 0 0 0 2211 2139 2305 11386;11387;11388;11389;11390;11391;11392 11651;11652;11653;11654;11655;11656;11657;11658;11659;11660;11661 11656 11 ALTSELANARDESKK TTEAEKNERVQKHLKALTSELANARDESKK ALTSELANARDESKKTANDMIHAENMRLGR K A L K K T 3 1 1 1 0 0 2 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 15 2 1631.8479 P26038 P26038 524 538 MSN Moesin yes yes 3 0.03112 18.391 By MS/MS 1 0.96563 1.0636 NaN 1 Median 0.96563 1.0636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12432000 5840000 6592300 12432000 5840000 6592300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2212 2139 2306 11393 11662;11663 11663 2 ALTSFER QQQVFKGLNDKVKKKALTSFERDSIFSNLT LNDKVKKKALTSFERDSIFSNLTGQLDYQG K A L E R D 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 7 0 822.42357 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21 H0YFD6 416 422 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.014908 73.039 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.377 1.2404 10.782 5 Median 1.1044 1.0578 NaN 1 0 Median 1.2648 1.2377 3.523 2 0 Median 1.377 1.4287 NaN 1 0 Median 1.4493 1.2404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19219000 8445000 10774000 4973200 2347500 2625700 7550800 3145500 4405200 5998900 2675100 3323700 695720 276800 418920 0 0 0 0 0 0 2213 1180 2307 11394;11395;11396;11397;11398 11664;11665;11666;11667;11668 11666 5 ALTSQLTDEELAQGR NTRHISDSVFLEAAKALTSQLTDEELAQGR ALTSQLTDEELAQGRLYPPLANIQEVSINI K A L G R L 2 1 0 1 0 2 2 1 0 0 3 0 0 0 0 1 2 0 0 0 0 0 15 0 1630.8162 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68 A0A1W2PPH1 459 473 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 2.7542E-09 118.48 By matching By matching By MS/MS 1 1 1 0.93924 0.97368 16.41 3 Median 0.9072 0.85237 NaN 1 0 Median 1.3667 1.1813 NaN 1 0 Median 0.93924 0.97368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68925000 30267000 38659000 46024000 20547000 25478000 18669000 7742000 10927000 4232100 1978100 2254000 0 0 0 0 0 0 0 0 0 2214 337 2308 11399;11400;11401 11669;11670 11670 2 ALTSVVNYR TVLNGDQHFMSALDKALTSVVNYREPKSVC MSALDKALTSVVNYREPKSVCKAPELLAKY K A L Y R E 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 2 0 0 9 0 1021.5556 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 384 392 CUL2 Cullin-2 yes no 2 0.017382 66.073 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2215 196 2309 11402;11403 11671;11672 11672 2 ALTSVVNYREPK TVLNGDQHFMSALDKALTSVVNYREPKSVC LDKALTSVVNYREPKSVCKAPELLAKYCDN K A L P K S 1 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 1 2 0 0 12 1 1375.746 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 384 395 CUL2 Cullin-2 yes no 2;3 0.0001722 81.865 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.98845 0.97752 16.25 8 Median 0.92535 0.94954 10.981 3 0 Median 0.94378 0.94403 17.66 2 1 Median 1.1603 1.2329 1.7355 2 0 Median 1.0399 0.99226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23923000 11630000 12293000 13770000 6985900 6784200 4179400 1998400 2181000 4856900 2145100 2711800 1116700 500280 616410 0 0 0 0 0 0 2216 196 2310 11404;11405;11406;11407;11408;11409;11410;11411 11673;11674;11675;11676;11677;11678;11679 11674 7 ALTTEVPIPAK PSVPKISSMTETAPRALTTEVPIPAKITVT TAPRALTTEVPIPAKITVTIANTETSDMPF R A L A K I 2 0 0 0 0 0 1 0 0 1 1 1 0 0 2 0 2 0 0 1 0 0 11 0 1138.6598 A6NEM2 A6NEM2 1511 1521 HCFC1 yes yes 2 0.0075158 60.91 By MS/MS 1 0.70028 0.77012 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70028 0.77012 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3657900 1617100 2040800 0 0 0 0 0 0 3657900 1617100 2040800 0 0 0 0 0 0 0 0 0 2217 509 2311 11412 11680 11680 1 ALTTMGFR DTDRSGTVDPQELQKALTTMGFRLSPQAVN DPQELQKALTTMGFRLSPQAVNSIAKRYST K A L F R L 1 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 0 0 0 8 0 895.45857 C9J0K6;P30626 C9J0K6 85 92 SRI Sorcin yes no 2 0.0031291 101.21 By MS/MS By matching 2 2 1.7314 1.4369 118.1 4 Median 3.7547 3.5463 183.21 2 0 Median 1.7314 1.4369 10.678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26378000 10450000 15928000 24919000 9974100 14945000 1459200 476300 982860 0 0 0 0 0 0 0 0 0 0 0 0 2218 669 2312 11413;11414;11415;11416 11681;11682 11682 2 ALTTPTHYK KKEERLKPTNPAAQKALTTPTHYKLTPRPA NPAAQKALTTPTHYKLTPRPATRVRPKALQ K A L Y K L 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 3 0 1 0 0 0 9 0 1030.5447 P52948;A0A3B3ITD8;H0YEN4;H0YCR0 P52948 543 551 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0702 26.602 By MS/MS By matching 1 2 0.95375 0.91784 7.9648 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88062 0.91784 NaN 1 0 Median 1.0182 0.87873 10.688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2271700 1046700 1225000 0 0 0 0 0 0 1386800 651020 735800 884880 395670 489220 0 0 0 0 0 0 2219 2462 2313 11417;11418;11419 11683 11683 1 ALTVPELTQQMFDAK PGFAPLTSRGSQQYRALTVPELTQQMFDAK ALTVPELTQQMFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 1 1 1 0 2 0 0 1 0 0 15 0 1690.86 A0A0B4J269;Q13509;P04350;P68371 P68371 283 297 TUBB3;TUBB4A;TUBB4B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta-4B chain no no 2;3 1.6761E-09 142.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 12 7 2 3 14 1.0137 0.90404 19.406 47 Median 0.96078 0.89473 18.616 9 0 Median 0.96926 0.83084 22.333 12 4 Median 0.93451 1.0096 11.489 7 0 Median 1.071 0.94157 1.6256 2 0 Median 1.4232 1.4821 2.7558 3 0 Median 1.0864 0.90697 12.044 14 0 Median 536300000 262060000 274240000 230050000 112560000 117490000 187260000 93433000 93826000 50689000 24694000 25995000 8961300 4235700 4725700 9858700 3881000 5977700 49482000 23254000 26228000 2220 2634;1849;216 2314;2315 11420;11421;11422;11423;11424;11425;11426;11427;11428;11429;11430;11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444;11445;11446;11447;11448;11449;11450;11451;11452;11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464;11465;11466;11467 11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702;11703;11704;11705;11706;11707;11708;11709;11710;11711;11712;11713;11714;11715;11716;11717;11718;11719;11720;11721;11722;11723;11724;11725;11726;11727;11728;11729;11730 11702 87 47 ALTVPELTQQMFDAR PGFAPLTSRGSQQYRALTVPELTQQMFDAR ALTVPELTQQMFDARNMMAACDPRHGRYLT R A L A R N 2 1 0 1 0 2 1 0 0 0 2 0 1 1 1 0 2 0 0 1 0 0 15 0 1718.8662 Q9BUF5;K7ESM5 Q9BUF5 283 297 TUBB6 Tubulin beta-6 chain yes no 2 0.00028434 69.01 By MS/MS By MS/MS By matching 1 1 2 1.0342 0.90293 22.282 4 Median 1.0868 1.0668 NaN 1 0 Median 1.0795 0.93216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84882 0.74297 23.07 2 0 Median 7948500 3736600 4212000 5048400 2514000 2534400 2024900 736490 1288400 0 0 0 0 0 0 0 0 0 875230 486070 389160 2221 3838 2316 11468;11469;11470;11471 11731;11732;11733;11734 11734 4 ALTVPELTQQMFDSK PGFAPLTSRGSQQYRALTVPELTQQMFDSK ALTVPELTQQMFDSKNMMAACDPRHGRYLT R A L S K N 1 0 0 1 0 2 1 0 0 0 2 1 1 1 1 1 2 0 0 1 0 0 15 0 1706.8549 Q13885;Q9BVA1 Q9BVA1 283 297 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 2.1562E-06 89.805 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.95816 0.90209 24.63 6 Median 0.87552 0.80843 5.213 2 1 Median 1.1686 0.99395 NaN 1 0 Median 0.67345 0.71142 44.15 2 0 Median 1.111 0.97017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74262000 37386000 36876000 41573000 19983000 21590000 5598800 2898000 2700800 26581000 14059000 12521000 509500 446080 63423 0 0 0 0 0 0 2222 3849;2844 2317 11472;11473;11474;11475;11476;11477 11735;11736;11737;11738 11736 4 ALTVPELTQQVFDAK PGFAPLTSRGSQQYRALTVPELTQQVFDAK ALTVPELTQQVFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1658.8879 Q5JP53;P07437;Q5ST81 Q5JP53 265 279 TUBB Tubulin beta chain yes no 2;3 9.1085E-76 202.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 13 5 9 5 19 1.067 0.9151 31.45 58 Median 0.92015 0.87196 6.1088 9 0 Median 1.0074 0.84896 48.306 13 4 Median 0.98441 0.9361 21.803 5 0 Median 1.2314 1.1009 13.763 7 0 Median 1.4787 1.5033 20.415 5 1 Median 1.0962 0.91499 22.846 19 0 Median 1826400000 875810000 950570000 274230000 138040000 136190000 721900000 350390000 371510000 120730000 61266000 59468000 155060000 71808000 83248000 61077000 24073000 37004000 493380000 230230000 263160000 2223 1887 2318 11478;11479;11480;11481;11482;11483;11484;11485;11486;11487;11488;11489;11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503;11504;11505;11506;11507;11508;11509;11510;11511;11512;11513;11514;11515;11516;11517;11518;11519;11520;11521;11522;11523;11524;11525;11526;11527;11528;11529;11530;11531;11532;11533;11534;11535;11536;11537 11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759;11760;11761;11762;11763;11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804 11774 66 ALVADSHPESER EDYAETVHQLSKTSRALVADSHPESERISM TSRALVADSHPESERISMRQSKVDKLYAGL R A L E R I 2 1 0 1 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1309.6262 Q01082;A0A087WUZ3 Q01082 1657 1668 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00016972 85.377 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 4 3 3 0.97907 0.86311 34.497 20 Median 1.6577 1.2638 17.798 3 0 Plateau 1.3043 1.0919 51.994 4 0 Median 0.72429 0.79103 28.088 3 0 Median 0.88064 0.80633 5.7502 4 0 Linear 0.9976 1.0473 5.6771 3 2 Median 0.98507 0.81777 30.912 3 0 Plateau 59519000 29657000 29861000 2065700 760280 1305400 12577000 5225900 7350800 18908000 10741000 8167600 4142200 2156400 1985900 15970000 7875200 8094800 5855500 2898700 2956900 2224 2681 2319 11538;11539;11540;11541;11542;11543;11544;11545;11546;11547;11548;11549;11550;11551;11552;11553;11554;11555;11556;11557;11558 11805;11806;11807;11808;11809;11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828 11818 24 ALVAESHNMK INQRNREWNIVESEKALVAESHNMKNQQMD VESEKALVAESHNMKNQQMDPFTRRQCKPT K A L M K N 2 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 0 10 0 1098.5492 Q92541 Q92541 578 587 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 2 0.037233 31.934 By matching By MS/MS By matching 1 1 1 0.99296 0.89678 4.0484 3 Plateau 0.84144 0.83126 NaN 1 0 Median 0.99296 0.89678 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0033 0.8848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 640770 319070 321700 97611 57813 39798 423890 197440 226450 0 0 0 119270 63818 55453 0 0 0 0 0 0 2225 3534 2320 11559;11560;11561 11829 11829 1 ALVAMNENLK KIESKADPSILQNLRALVAMNENLKSQEQE LQNLRALVAMNENLKSQEQEFKAHCREEMT R A L L K S 2 0 2 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1101.5852 Q567U6;F8W9X7;H7C050 Q567U6 388 397 CCDC93 Coiled-coil domain-containing protein 93 yes no 2 0.0075699 66.621 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2226 1089 2321 11562 11830 11830 1 ALVATPGKK KAVTTPGKKGATPGKALVATPGKKGAAIPA GATPGKALVATPGKKGAAIPAKGAKNGKNA K A L K K G 2 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 883.5491 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 117 125 NCL Nucleolin yes no 2 0.0086349 55.676 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 4 3 2 1.0085 0.98894 11.465 17 Median 0.87865 0.93297 13.353 3 0 Median 1.0302 0.98839 3.4927 3 0 Median 1.1009 1.1815 10.61 2 0 Median 1.1304 1.0461 7.0081 4 0 Median 0.9779 1.0936 9.0138 3 0 Plateau 1.0267 0.90353 0.55943 2 0 Median 9384400 4510000 4874400 776310 411560 364750 2857000 1301100 1555900 2780700 1283200 1497600 1118800 559020 559770 1673700 866360 807350 177840 88741 89097 2227 2063 2322 11563;11564;11565;11566;11567;11568;11569;11570;11571;11572;11573;11574;11575;11576;11577;11578;11579 11831;11832;11833;11834;11835;11836;11837;11838;11839 11831 9 ALVAVLLSR HPHRLTGNKVQQYHRALVAVLLSRTWHVRR VQQYHRALVAVLLSRTWHVRRQAQQTVRKL R A L S R T 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 940.60695 Q92616 Q92616 568 576 GCN1L1 Translational activator GCN1 yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1816 1.0479 22.574 5 Median 1.1117 1.0479 NaN 1 0 Median 1.2147 1.0355 4.3052 2 0 Median 0.77866 0.86917 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5344 1.5929 NaN 1 0 Median NaN NaN NaN 0 0 Median 17411000 7785300 9626100 7545800 3424100 4121700 8344700 3694800 4649900 537490 334960 202520 0 0 0 983460 331530 651930 0 0 0 2228 3544 2323 11580;11581;11582;11583;11584 11840;11841;11842 11841 3 ALVAYYQK GHVAQIYAIRQSISKALVAYYQKYVDEASK IRQSISKALVAYYQKYVDEASKKEIKDILI K A L Q K Y 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 954.51747 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 91 98 RPS16 40S ribosomal protein S16 yes no 2 0.0029334 103.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 1 1.2477 1.0831 73.223 10 Median 1.1722 1.0968 NaN 1 0 Median 1.204 1.0259 111.8 3 1 Median 1.6089 1.5299 30.743 2 1 Median 1.521 1.2446 19.526 3 0 Plateau 2.1056 2.2256 NaN 1 1 Median NaN NaN NaN 0 0 Median 304940000 159130000 145810000 130910000 59094000 71812000 118950000 76564000 42382000 45481000 19725000 25757000 6976100 2964800 4011300 2626100 780720 1845400 0 0 0 2229 2574 2324 11585;11586;11587;11588;11589;11590;11591;11592;11593;11594 11843;11844;11845;11846;11847;11848;11849;11850;11851;11852;11853;11854 11851 12 ALVDGPCTQVR AGKLVAIVDVIDQNRALVDGPCTQVRRQAM DQNRALVDGPCTQVRRQAMPFKCMQLTDFI R A L V R R 1 1 0 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1214.6078 E7EPB3;P50914 E7EPB3 36 46 RPL14 60S ribosomal protein L14 yes no 2 4.1022E-05 119.68 By MS/MS By MS/MS By MS/MS 1 1 1 0.72551 0.68845 36.954 3 Median 0.72551 0.68845 NaN 1 0 Median 0.57554 0.48702 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0248 1.0193 NaN 1 1 Median NaN NaN NaN 0 0 Median 61177000 38111000 23067000 14127000 7671900 6455300 42360000 27997000 14363000 0 0 0 0 0 0 4689900 2442100 2247800 0 0 0 2230 868 2325 11595;11596;11597 11855;11856;11857;11858 11858 4 ALVDHENVISCPHLGASTK GAALDVFTEEPPRDRALVDHENVISCPHLG HENVISCPHLGASTKEAQSRCGEEIAVQFV R A L T K E 2 0 1 1 1 0 1 1 2 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 2047.0157 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YF78 A0A286YF22 271 289 PHGDH D-3-phosphoglycerate dehydrogenase yes no 3 3.0725E-08 70.837 By MS/MS 1 1.5066 1.4108 NaN 1 Median 1.5066 1.4108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7356400 3443300 3913200 7356400 3443300 3913200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2231 351 2326 11598 11859 11859 1 ALVDILSEVSK ALAQYQNHLQEQPRKALVDILSEVSKATLQ QPRKALVDILSEVSKATLQEILPEVLKADL K A L S K A 1 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 11 0 1172.6653 Q9BQG0;I3L1L3 Q9BQG0 180 190 MYBBP1A Myb-binding protein 1A yes no 2 0.00096639 61.65 By MS/MS By matching By matching By MS/MS By matching 2 1 2 2 2 0.96299 0.98764 20.53 9 Median NaN NaN NaN 0 0 Median 1.0488 0.90959 18.998 2 0 Median 1.0412 1.1253 NaN 1 0 Median 1.2221 1.0894 13.868 2 0 Median 0.93539 0.9709 5.5747 2 0 Median 0.81217 0.70192 17.129 2 0 Median 19653000 9233200 10420000 0 0 0 7255300 3198100 4057200 5664500 2689400 2975000 361380 163620 197750 6064900 3017100 3047800 306840 164870 141970 2232 3789 2327 11599;11600;11601;11602;11603;11604;11605;11606;11607 11860;11861;11862 11862 3 ALVEEALAQR LQRLDFYQHSWLPARALVEEALAQRFQVDP WLPARALVEEALAQRFQVDPSGEIVELAKG R A L Q R F 3 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1098.6033 Q9HB07;F8VQQ3;F8VR84 Q9HB07 244 253 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 0.00039409 121.62 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.97526 0.89897 27.362 8 Median 1.1733 1.1391 24.011 2 0 Median 1.174 0.99774 11.544 2 1 Median 0.62886 0.64599 26.996 2 0 Median 0.95168 0.81342 10.944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67973000 33899000 34074000 49269000 24270000 24999000 11373000 5132000 6240700 5668100 3641300 2026800 1662800 855880 806870 0 0 0 0 0 0 2233 4014 2328 11608;11609;11610;11611;11612;11613;11614;11615 11863;11864;11865;11866;11867;11868;11869 11864 7 ALVEMQDVVAELLR RAANPFQQKLSGSHKALVEMQDVVAELLRT KALVEMQDVVAELLRTVPWEQPATKDPLLR K A L L R T 2 1 0 1 0 1 2 0 0 0 3 0 1 0 0 0 0 0 0 3 0 0 14 0 1584.8545 Q9C0H2 Q9C0H2 317 330 TTYH3 Protein tweety homolog 3 yes yes 2 3.9343E-07 116.23 By matching By MS/MS 1 2 1.193 1.0193 62.044 3 Median 1.6911 1.6082 NaN 1 0 Median 0.74071 0.6931 54.55 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2093100 909470 1183600 170270 47062 123200 1922900 862410 1060400 0 0 0 0 0 0 0 0 0 0 0 0 2234 3905 2329 11616;11617;11618 11870 11870 1 ALVEVLGPYEPLLSR SGSWERDQQVEAAQRALVEVLGPYEPLLSR ALVEVLGPYEPLLSRVQAALVWERPARSAL R A L S R V 1 1 0 0 0 0 2 1 0 0 4 0 0 0 2 1 0 0 1 2 0 0 15 0 1654.9294 K7ENZ6;K7EMF4;K7ELM8;K7EJ34;K7ENF4;Q86VR2 K7ENZ6 41 55 FAM134C Protein FAM134C yes no 2 0.00038043 62.303 By MS/MS By MS/MS 4 4 0.9998 0.91674 34.522 8 Median 0.99655 1.0017 45.619 4 0 Median 0.9998 0.83989 14.982 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14346000 6717300 7629200 4824900 2224800 2600100 9521500 4492500 5029100 0 0 0 0 0 0 0 0 0 0 0 0 2235 1363 2330 11619;11620;11621;11622;11623;11624;11625;11626 11871;11872;11873 11871 3 ALVGDFMNR YLNYKVCLAEVYQDKALVGDFMNRRGDYDD EVYQDKALVGDFMNRRGDYDDPKVCANEFK K A L N R R 1 1 1 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1021.5015 Q12789;H3BRD0 Q12789 1345 1353 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0008961 91.9 By MS/MS By matching 1 1 0.96048 0.93363 6.4064 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89631 0.9769 NaN 1 0 Median 1.0292 0.89228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15662000 8237800 7423900 0 0 0 0 0 0 15569000 8199500 7369500 92753 38350 54403 0 0 0 0 0 0 2236 2758 2331 11627;11628 11874;11875 11875 2 ALVGGAVGGLAGAASK QGPEEFVEGMALGLKALVGGAVGGLAGAAS LVGGAVGGLAGAASKITGAMAKGVAAMTMD K A L S K I 5 0 0 0 0 0 0 5 0 0 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1297.7354 Q96RL7 Q96RL7 2908 2923 VPS13A Vacuolar protein sorting-associated protein 13A yes yes 2 5.1984E-05 71.548 By MS/MS By MS/MS By matching 1 1 1 1.6347 1.4318 28.026 3 Median 1.111 1.1125 NaN 1 0 Median 1.6347 1.4318 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.1062 1.9468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17353000 7473000 9879500 10532000 4397200 6135100 6610900 3006400 3604400 0 0 0 209390 69376 140010 0 0 0 0 0 0 2237 3726 2332 11629;11630;11631 11876;11877 11877 2 ALVHERDEAAYGELR AVAKASKETHVMDYRALVHERDEAAYGELR ALVHERDEAAYGELRAMVLDLRAFYAELYH R A L L R A 3 2 0 1 0 0 3 1 1 0 2 0 0 0 0 0 0 0 1 1 0 0 15 1 1727.8591 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 204 218 PSME2 Proteasome activator complex subunit 2 yes no 3;4 2.0492E-09 123.29 By MS/MS By MS/MS 2 2 0.99692 0.94986 15.241 4 Median 0.79432 0.8521 22.708 2 0 Median 1.1209 0.95191 7.6532 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51064000 24824000 26240000 13694000 7615400 6078300 37370000 17209000 20162000 0 0 0 0 0 0 0 0 0 0 0 0 2238 125 2333 11632;11633;11634;11635 11878;11879;11880;11881;11882;11883;11884;11885 11883 8 ALVILAK ______________________________ ______________________________ R A L A K G 2 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 726.50036 Q99497;K7ELW0 Q99497 6 12 PARK7 Protein deglycase DJ-1 yes no 1 0.070533 71.995 By MS/MS By matching By matching 2 2 1 1.1852 1.0222 5.1667 5 Median 1.1254 1.0125 6.3186 2 0 Median 1.2031 1.0218 0.051754 2 0 Median 1.1852 1.1139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73946000 33077000 40870000 55911000 24907000 31004000 10289000 4793500 5495300 7746300 3376300 4370000 0 0 0 0 0 0 0 0 0 2239 3749 2334 11636;11637;11638;11639;11640 11886 11886 0 ALVIQESER AVGLPLGPGREALEKALVIQESERRKKLRF REALEKALVIQESERRKKLRFHPRQLYLSV K A L E R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 601 609 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.0030831 85.064 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2240 277 2335 11641 11887 11887 1 ALVIQESERR AVGLPLGPGREALEKALVIQESERRKKLRF EALEKALVIQESERRKKLRFHPRQLYLSVK K A L R R K 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1199.6622 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 601 610 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 3 0.0024379 44.203 By MS/MS By matching 1 1 0.79042 0.90862 39.142 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98532 1.1984 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63408 0.68894 NaN 1 0 Median NaN NaN NaN 0 0 Median 2146000 1134600 1011400 0 0 0 0 0 0 1259900 608120 651810 0 0 0 886050 526440 359610 0 0 0 2241 277 2336 11642;11643 11888 11888 1 ALVIVMGK GGEPTYNVAVGRAGRALVIVMGKEGVHGGT AVGRAGRALVIVMGKEGVHGGTLNKKAYEL R A L G K E 1 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 2 0 0 8 0 829.50955 C9J0J7;G5E9Q6 C9J0J7 60 67 PFN2 Profilin yes no 2 0.007444 67.035 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.2217 1.0743 10.483 9 Median 1.1097 1.005 2.9173 2 0 Median 1.3315 1.1092 5.7146 3 0 Median 1.2243 1.2149 0.94788 2 0 Median 1.1673 0.94991 6.4886 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110370000 49903000 60470000 69714000 32875000 36839000 33194000 13672000 19522000 4720600 2127300 2593300 2744000 1228700 1515300 0 0 0 0 0 0 2242 668 2337;2338 11644;11645;11646;11647;11648;11649;11650;11651;11652 11889;11890;11891;11892;11893;11894;11895;11896;11897;11898;11899;11900;11901;11902 11894 244 14 ALVLANPEVSLWR RLRLLEEAQLQDLEKALVLANPEVSLWRKQ EKALVLANPEVSLWRKQKELQYLQGHLVSS K A L W R K 2 1 1 0 0 0 1 0 0 0 3 0 0 0 1 1 0 1 0 2 0 0 13 0 1466.8245 Q9NU22;Q5T795 Q9NU22 234 246 MDN1 Midasin yes no 2 4.1866E-05 90.108 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1 1.1026 0.97149 9.7233 7 Median 1.1954 1.2065 NaN 1 0 Median 1.1026 0.93742 NaN 1 0 Median 0.85983 0.93549 5.3393 2 0 Median 1.1426 0.99121 3.2736 2 0 Median 1.0338 1.0699 NaN 1 0 Median NaN NaN NaN 0 0 Median 13993000 6778800 7214000 1782500 732940 1049600 3165900 1502900 1662900 7898400 4020900 3877500 247100 110890 136210 898860 411150 487710 0 0 0 2243 4112 2339 11653;11654;11655;11656;11657;11658;11659 11903;11904;11905;11906;11907;11908 11908 6 ALVLAQIR VLQMPRGNLEVVHHRALVLAQIRKWLDKLM LEVVHHRALVLAQIRKWLDKLMFKEAFECM R A L I R K 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 882.56509 O95163;F5H2T0 O95163 723 730 IKBKAP Elongator complex protein 1 yes no 2 0.066188 31.289 By matching By MS/MS 1 2 1.3043 1.2658 8.3552 3 Median 1.2727 1.2786 NaN 1 0 Median 1.345 1.1806 9.8602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6966700 3049900 3916800 1458600 560670 897950 5508100 2489200 3018800 0 0 0 0 0 0 0 0 0 0 0 0 2244 1749 2340 11660;11661;11662 11909 11909 1 ALVMLLEVR LAGDEEPEVRKNVCRALVMLLEVRMDRLLP RKNVCRALVMLLEVRMDRLLPHMHNIVEYM R A L V R M 1 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 2 0 0 9 0 1042.6209 Q92973 Q92973 246 254 TNPO1 Transportin-1 no no 2 0.019275 40.002 By MS/MS 1 1.1436 0.99091 NaN 1 Median NaN NaN NaN 0 0 Median 1.1436 0.99091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3767200 1724200 2043000 0 0 0 3767200 1724200 2043000 0 0 0 0 0 0 0 0 0 0 0 0 2245 3570 2341 11663 11910 11910 1 ALVNHSGLSAPVPR FIWDLITPTADGQTRALVNHSGLSAPVPRG RALVNHSGLSAPVPRGRKGKKVKAQSTQPV R A L P R G 2 1 1 0 0 0 0 1 1 0 2 0 0 0 2 2 0 0 0 2 0 0 14 0 1416.7837 Q9P2D1 Q9P2D1 1678 1691 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2;3 1.2385E-05 88.596 By matching By MS/MS By MS/MS 1 3 1 0.7074 0.67927 18.627 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59888 0.62858 22.388 3 0 Median 0.84282 0.73404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46534000 28262000 18272000 1496800 1153100 343750 0 0 0 42100000 25524000 16576000 2936900 1585100 1351900 0 0 0 0 0 0 2246 4220 2342 11664;11665;11666;11667;11668 11911;11912;11913;11914 11911 4 ALVNQLHER DLGSALYQENYKQMKALVNQLHERVEHIKL NYKQMKALVNQLHERVEHIKLGGGEKARAL K A L E R V 1 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1078.5883 Q9HCC0;A0A0G2JM88;D6R9R1;D6RDF7 Q9HCC0 51 59 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 2 0.0066905 69.423 By MS/MS By MS/MS 1 1 1.1812 1.0902 48.288 2 Median 0.79345 0.77488 NaN 1 1 Median 1.7584 1.534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5296900 3097600 2199400 4470100 2723300 1746900 826830 374320 452520 0 0 0 0 0 0 0 0 0 0 0 0 2247 4027 2343 11669;11670 11915;11916 11915 2 ALVPDPPGPPTAR HILRSKDVYGYSSCRALVPDPPGPPTARGQ CRALVPDPPGPPTARGQARRPVPRAAARRR R A L A R G 2 1 0 1 0 0 0 1 0 0 1 0 0 0 5 0 1 0 0 1 0 0 13 0 1286.6983 Q8N9Z2 Q8N9Z2 106 118 CCDC71L Coiled-coil domain-containing protein 71L yes yes 2 0.031759 26.673 By MS/MS 1 0.38143 0.37598 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38143 0.37598 NaN 1 0 Median NaN NaN NaN 0 0 Median 2623300 1798300 825050 0 0 0 0 0 0 0 0 0 0 0 0 2623300 1798300 825050 0 0 0 2248 3399 2344 11671 11917 11917 1 ALVPDSVK VTVDDLVAEITPKGRALVPDSVKKELLQRI EITPKGRALVPDSVKKELLQRIRTFLAQHA R A L V K K 1 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 8 0 827.47527 Q9NPA8 Q9NPA8 77 84 ENY2 Transcription and mRNA export factor ENY2 yes yes 2 0.031031 38.792 By MS/MS By matching By matching 1 1 1 1.6099 0.85368 32.6 3 Plateau NaN NaN NaN 0 0 Median 0.96708 0.80702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6193 1.4568 NaN 1 0 Median 0.80767 0.85368 NaN 1 0 Median NaN NaN NaN 0 0 Median 2136000 961820 1174100 0 0 0 550540 286880 263660 0 0 0 1191900 471030 720880 393520 203920 189600 0 0 0 2249 4045 2345 11672;11673;11674 11918 11918 1 ALVPDSVKK VTVDDLVAEITPKGRALVPDSVKKELLQRI ITPKGRALVPDSVKKELLQRIRTFLAQHAS R A L K K E 1 0 0 1 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 2 0 0 9 1 955.57023 Q9NPA8 Q9NPA8 77 85 ENY2 Transcription and mRNA export factor ENY2 yes yes 2 0.0063554 60.59 By MS/MS By MS/MS By MS/MS 1 2 1 0.96495 0.75713 13.187 4 Median 0.73487 0.68818 NaN 1 0 Median 0.96495 0.75713 5.7314 2 0 Median NaN NaN NaN 0 0 Median 1.1104 0.93132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17075000 8904800 8170600 7573900 4298900 3275000 8219200 4030200 4188900 0 0 0 1282300 575720 706620 0 0 0 0 0 0 2250 4045 2346 11675;11676;11677;11678 11919;11920;11921;11922 11920 4 ALVPFEDLFGQAPGGER SLVPSPPEPRQRPTKALVPFEDLFGQAPGG VPFEDLFGQAPGGERDKASFLQTVQKFAEH K A L E R D 2 1 0 1 0 1 2 3 0 0 2 0 0 2 2 0 0 0 0 1 0 0 17 0 1801.8999 K7EPL5;Q9BQ95 K7EPL5 68 84 ECSIT Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial yes no 2 0.024547 36.303 By MS/MS 1 1.1532 0.98381 NaN 1 Median NaN NaN NaN 0 0 Median 1.1532 0.98381 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1496700 867410 629320 0 0 0 1496700 867410 629320 0 0 0 0 0 0 0 0 0 0 0 0 2251 1393 2347 11679 11923 11923 1 ALVPMFVR NWLRAKEPAGENGGRALVPMFVRKSQFRLP AGENGGRALVPMFVRKSQFRLPFKATTPVI R A L V R K 1 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 2 0 0 8 0 931.53134 P16435;H0Y4R2;E7EMD0 P16435 507 514 POR NADPH--cytochrome P450 reductase yes no 2 0.024981 43 By MS/MS By matching By matching 2 1 1 1.1369 1.0367 23.028 4 Median 1.1627 1.1461 27.476 2 0 Median 1.3138 1.1389 NaN 1 0 Median 0.79433 0.81914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7090100 3574700 3515400 5571900 2905800 2666200 1033500 464240 569220 484740 204730 280010 0 0 0 0 0 0 0 0 0 2252 2030 2348 11680;11681;11682;11683 11924;11925 11925 2 ALVQLPR GRVGHLLSRDRARSRALVQLPRENQVVELH SRDRARSRALVQLPRENQVVELHYDAICQY R A L P R E 1 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 795.49667 Q92917 Q92917 446 452 GPKOW G patch domain and KOW motifs-containing protein yes yes 2 0.046807 54.525 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 543150 0 543150 0 0 0 0 0 0 543150 0 543150 0 0 0 0 0 0 0 0 0 2253 3566 2349 11684 11926 11926 1 ALVQNDTLLQVK FDQQNGRTYLKYSIKALVQNDTLLQVKGTG SIKALVQNDTLLQVKGTGANGSFKLNRKKL K A L V K G 1 0 1 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 0 2 0 0 12 0 1340.7664 Q92522 Q92522 95 106 H1FX Histone H1x yes yes 2 2.8622E-10 131.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 2 7 0.83693 0.81944 30.051 18 Median 1.0268 0.94278 20.939 4 0 Median 1.5556 1.3312 20.348 2 0 Median 0.83089 0.80139 34.014 3 0 Median 1.9251 1.5924 18.341 2 0 Median 0.7269 0.78654 7.5808 7 3 Median NaN NaN NaN 0 0 Median 614790000 315120000 299670000 186330000 91316000 95009000 8492200 3429100 5063100 71400000 35931000 35469000 4218200 1510200 2708000 344350000 182940000 161420000 0 0 0 2254 3531 2350 11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699;11700;11701;11702 11927;11928;11929;11930;11931;11932;11933;11934;11935;11936;11937;11938;11939;11940;11941;11942;11943;11944;11945;11946;11947;11948 11935 22 ALVQSLLAK RTEALYYTDDTAMARALVQSLLAKEAFDEV DTAMARALVQSLLAKEAFDEVDMAHRFAQE R A L A K E 2 0 0 0 0 1 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 941.59097 Q9NX46 Q9NX46 84 92 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 2 0.00094954 88.942 By MS/MS 1 1.2093 1.1267 NaN 1 Median 1.2093 1.1267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8812600 3851100 4961500 8812600 3851100 4961500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2255 4157 2351 11703 11949;11950 11949 2 ALVSAQWVAEALR ______________________________ CRALVSAQWVAEALRAPRAGQPLQLLDASW R A L L R A 4 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 1 0 2 0 0 13 0 1412.7776 P25325;B1AH49 P25325 9 21 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2 5.2583E-06 97.456 By MS/MS By MS/MS 1 2 1.2028 1.0098 10.217 3 Median 1.0618 0.99205 NaN 1 0 Median 1.314 1.0979 11.841 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25703000 10921000 14782000 9005400 4155400 4850000 16697000 6765100 9932100 0 0 0 0 0 0 0 0 0 0 0 0 2256 2131 2352 11704;11705;11706 11951;11952;11953 11952 3 ALVSEWK QITSASVRLVSQEPKALVSEWKEPQAKNIS RLVSQEPKALVSEWKEPQAKNISVASCNSS K A L W K E 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 7 0 831.44905 Q16531;F5GY55 Q16531 485 491 DDB1 DNA damage-binding protein 1 yes no 2 0.018479 62.714 By MS/MS By MS/MS 2 1 1.285 1.1208 8.0131 3 Median NaN NaN NaN 0 0 Median 1.2711 1.1111 1.2211 2 0 Median NaN NaN NaN 0 0 Median 1.495 1.2755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9532100 3704300 5827900 0 0 0 7078800 2816500 4262300 0 0 0 2453300 887780 1565500 0 0 0 0 0 0 2257 2985 2353 11707;11708;11709 11954;11955 11954 2 ALVSEWKEPQAK QITSASVRLVSQEPKALVSEWKEPQAKNIS EPKALVSEWKEPQAKNISVASCNSSQVVVA K A L A K N 2 0 0 0 0 1 2 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 12 1 1384.7351 Q16531;F5GY55 Q16531 485 496 DDB1 DNA damage-binding protein 1 yes no 2;3 1.0462E-06 110.14 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 1.2338 1.1753 20.436 9 Median 1.3016 1.3705 NaN 1 0 Median 1.1514 1.0733 20.634 2 0 Median 0.76773 0.877 16.617 3 1 Median 1.4081 1.3414 7.1772 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73566000 36460000 37106000 4489100 1894900 2594200 8438400 3707800 4730600 45057000 24636000 20421000 15582000 6221600 9360300 0 0 0 0 0 0 2258 2985 2354 11710;11711;11712;11713;11714;11715;11716;11717;11718 11956;11957;11958;11959;11960;11961;11962;11963;11964;11965;11966 11964 11 ALVSGKPAESSAVAATEK RRESVPPSIIMSSQKALVSGKPAESSAVAA SGKPAESSAVAATEKKAVTPAPPIKRWELS K A L E K K 5 0 0 0 0 0 2 1 0 0 1 2 0 0 1 3 1 0 0 2 0 0 18 1 1714.9101 O95182 O95182 75 92 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 2;3 1.7188E-08 94.01 By MS/MS By MS/MS By MS/MS 2 2 1 0.7167 0.71014 36.664 5 Median 0.71332 0.69038 3.9906 2 0 Median 1.5544 1.3475 1.5404 2 1 Median 0.68135 0.69152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49168000 22639000 26529000 13754000 7757800 5996400 28055000 10642000 17413000 7358800 4239700 3119100 0 0 0 0 0 0 0 0 0 2259 1752 2355 11719;11720;11721;11722;11723 11967;11968;11969;11970;11971;11972;11973 11972 7 ALVSGKPAESSAVAATEKK RRESVPPSIIMSSQKALVSGKPAESSAVAA GKPAESSAVAATEKKAVTPAPPIKRWELSS K A L K K A 5 0 0 0 0 0 2 1 0 0 1 3 0 0 1 3 1 0 0 2 0 0 19 2 1843.0051 O95182 O95182 75 93 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 3;4 3.3419E-10 92.993 By MS/MS By MS/MS By MS/MS 4 2 2 0.78601 0.84329 18.547 8 Median 0.78601 0.82205 6.3944 4 0 Median 1.5183 1.2113 7.5896 2 0 Median 0.75486 0.83686 1.9173 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20642000 9826800 10815000 6373800 3434500 2939300 10476000 4230700 6245400 3792400 2161600 1630800 0 0 0 0 0 0 0 0 0 2260 1752 2356 11724;11725;11726;11727;11728;11729;11730;11731 11974;11975;11976;11977;11978;11979 11977 6 ALVSHNGSLINVGSLLQR PGKSTKPGAAPTEHKALVSHNGSLINVGSL SHNGSLINVGSLLQRAEQQDSGRLYLENKI K A L Q R A 1 1 2 0 0 1 0 2 1 1 4 0 0 0 0 3 0 0 0 2 0 0 18 0 1877.0483 Q8N163;H0YB24;G3V119 Q8N163 801 818 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.015222 19.553 By MS/MS By MS/MS By matching 1 2 1 1.0676 1.0274 7.0131 4 Median NaN NaN NaN 0 0 Median 1.1948 1.0061 NaN 1 0 Median 0.94452 1.0242 3.3955 2 0 Median 1.3655 1.1637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15984000 7592200 8391600 0 0 0 5856400 2594700 3261700 8764200 4428900 4335300 1363100 568510 794590 0 0 0 0 0 0 2261 3354 2357 11732;11733;11734;11735 11980;11981;11982;11983;11984 11982 5 ALVTGYFMQVAHLER STDFTSRDYYINIRKALVTGYFMQVAHLER ALVTGYFMQVAHLERTGHYLTVKDNQVVQL K A L E R T 2 1 0 0 0 1 1 1 1 0 2 0 1 1 0 0 1 0 1 2 0 0 15 0 1733.8923 O43143 O43143 692 706 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 0.00023457 45.33 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 4 1 1.1564 1.0962 12.882 10 Median 1.1234 1.0943 NaN 1 0 Median 1.0996 0.96898 4.8163 2 0 Median 1.1559 1.2376 NaN 1 0 Median 1.3347 1.1026 NaN 1 0 Median 1.1163 1.1399 13.577 4 0 Median 1.1865 0.95692 NaN 1 0 Median 22833000 10741000 12092000 3086100 1487300 1598800 4144000 1933500 2210500 2467100 1267900 1199200 138110 62162 75949 9407200 4389700 5017500 3590400 1600000 1990500 2262 1553 2358 11736;11737;11738;11739;11740;11741;11742;11743;11744;11745 11985;11986;11987;11988 11988 4 ALVTLSSGDMR VVEEEKVDISEDGMKALVTLSSGDMRRALN DGMKALVTLSSGDMRRALNILQSTNMAFGK K A L M R R 1 1 0 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 11 0 1148.586 P40937 P40937 204 214 RFC5 Replication factor C subunit 5 yes yes 2 9.1196E-05 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 1.3171 1.1802 14.959 8 Median 1.1046 1.1049 NaN 1 0 Median 1.5904 1.3439 3.6482 2 0 Median 0.93948 0.96424 15.571 2 0 Median 1.3573 1.1704 NaN 1 0 Median 1.2781 1.319 NaN 1 1 Median 1.4632 1.1901 NaN 1 0 Median 72289000 34086000 38203000 24495000 12447000 12048000 6126400 2364900 3761500 26680000 12830000 13850000 3153400 1338700 1814700 6351400 2834800 3516600 5482200 2270600 3211600 2263 2293 2359 11746;11747;11748;11749;11750;11751;11752;11753 11989;11990;11991;11992;11993;11994;11995;11996;11997 11991 9 ALVVEMSR RAIEALHGHELRPGRALVVEMSRPRPLNTW HELRPGRALVVEMSRPRPLNTWKIFVGNVS R A L S R P 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 8 0 903.48479 Q96PK6;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74 Q96PK6 65 72 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 0.0024657 108.24 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.3525 1.2281 19.592 4 Median NaN NaN NaN 0 0 Median 1.9208 1.6706 NaN 1 0 Median 1.0682 1.0833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1186 1.1328 NaN 1 0 Median 1.6354 1.3314 NaN 1 0 Median 36104000 16380000 19724000 0 0 0 1427800 399670 1028100 16963000 7889100 9073900 0 0 0 16328000 7511300 8816400 1385500 580380 805120 2264 3712 2360 11754;11755;11756;11757;11758 11998;11999;12000;12001;12002 12000 5 ALVVEMSRPR RAIEALHGHELRPGRALVVEMSRPRPLNTW LRPGRALVVEMSRPRPLNTWKIFVGNVSAA R A L P R P 1 2 0 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 2 0 0 10 1 1156.6387 Q96PK6;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74 Q96PK6 65 74 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 0.0016414 84.568 By MS/MS 1 0.80305 0.89614 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80305 0.89614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10729000 6193800 4535100 0 0 0 0 0 0 10729000 6193800 4535100 0 0 0 0 0 0 0 0 0 2265 3712 2361 11759 12003 12003 1 ALVVKALK ECDLAQHLAGQHLAKALVVKALKAFVRDPA AGQHLAKALVVKALKAFVRDPAPTKPLVLS K A L L K A 2 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 8 1 840.57967 Q5JU69;Q8N2E6 Q5JU69 68 75 TOR2A Torsin-2A;Prosalusin;Salusin-alpha;Salusin-beta yes no 2 0.021828 80.555 By MS/MS 1 1.2977 1.2081 NaN 1 Median NaN NaN NaN 0 0 Median 1.2977 1.2081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4987700 2250600 2737100 0 0 0 4987700 2250600 2737100 0 0 0 0 0 0 0 0 0 0 0 0 2266 3055 2362 11760 12004;12005 12005 2 ALWEDEGVR VPDFDFPPEFYEHAKALWEDEGVRACYERS FYEHAKALWEDEGVRACYERSNEYQLIDCA K A L V R A 1 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 9 0 1073.5142 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6;A0A590UJQ2;A0A590UJS2;S4R3E3;A0A590UJ22;A0A590UKA4;H0Y7F4;Q5JWE9;A0A590UK28;A0A590UJC9;A0A590UKA9;A0A590UJB7;A0A590UJY8;S4R3V9 Q5JWF2 795 803 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 0.0021293 74.127 By MS/MS By matching By matching 2 1 1 1.1956 1.2025 70.587 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2594 1.3174 24.666 2 0 Median 0.3646 0.32965 NaN 1 0 Median 1.2966 1.3067 NaN 1 0 Median NaN NaN NaN 0 0 Median 19255000 8432700 10822000 0 0 0 0 0 0 15758000 6715400 9042200 495910 376370 119540 3001700 1340900 1660700 0 0 0 2267 2616 2363 11761;11762;11763;11764 12006;12007 12007 2 ALWFQGR TREDAMAMVDHCLKKALWFQGRCVKVDLSE MVDHCLKKALWFQGRCVKVDLSEKYKKLVL K A L G R C 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 876.46062 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 556 562 MATR3 Matrin-3 yes no 2 0.0039849 102.12 By MS/MS By matching By MS/MS By matching 2 2 4 4 1.17 1.1588 7.6839 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0719 1.136 4.094 2 0 Median 1.2942 1.0923 16.902 2 0 Median 1.1093 1.1278 5.834 4 0 Median 1.368 1.1619 7.6051 4 0 Median 67086000 31809000 35277000 0 0 0 0 0 0 18286000 8939000 9347400 1709500 841340 868120 42193000 19797000 22397000 4896700 2231600 2665100 2268 297 2364 11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776 12008;12009;12010;12011;12012;12013;12014;12015;12016 12009 9 ALWVISK LNDTIKNSDKNVRTRALWVISKQTFPSEVV SDKNVRTRALWVISKQTFPSEVVGKMVSSI R A L S K Q 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 1 0 0 7 0 815.49052 Q5UIP0;H7BZN3 Q5UIP0 119 125 RIF1 Telomere-associated protein RIF1 yes no 2 0.034572 47.743 By MS/MS By matching 1 1 0.98528 0.99406 22.392 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0611 1.1646 NaN 1 0 Median 0.91489 0.84849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1919800 968040 951780 0 0 0 0 0 0 1754600 899160 855430 165240 68887 96351 0 0 0 0 0 0 2269 3109 2365 11777;11778 12017 12017 1 ALYALQDIVSR FHELQLLNTDYLRQRALYALQDIVSRHISE LRQRALYALQDIVSRHISESHEKGENVKSV R A L S R H 2 1 0 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 1 1 0 0 11 0 1247.6874 A0A4W8VX11;Q15154;H0YBA1 A0A4W8VX11 1368 1378 PCM1 Pericentriolar material 1 protein yes no 2 0.00015771 90.15 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.82391 0.87533 26.027 5 Median 1.2068 1.1648 NaN 1 0 Median 0.62765 0.56612 NaN 1 0 Median 0.7783 0.8566 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85148 0.89559 3.2363 2 0 Median NaN NaN NaN 0 0 Median 18203000 9186800 9016600 4093400 1765400 2328000 453900 315180 138730 5548600 2776300 2772300 0 0 0 8107600 4330000 3777700 0 0 0 2270 479 2366 11779;11780;11781;11782;11783 12018;12019;12020;12021;12022;12023 12021 6 ALYALQEEMLQLSQQLDASEQHK EQERLRKEEGQIRLRALYALQEEMLQLSQQ MLQLSQQLDASEQHKALLKVDLAAFQTRGN R A L H K A 3 0 0 1 0 5 3 0 1 0 5 1 1 0 0 2 0 0 1 0 0 0 23 0 2672.3116 Q53GS7 Q53GS7 247 269 GLE1 Nucleoporin GLE1 yes yes 3 0.059668 7.1933 By matching By matching By MS/MS 1 1 1 1.1138 1.1461 16.056 3 Plateau NaN NaN NaN 0 0 Median 0.93711 0.84817 NaN 1 0 Median 1.0353 1.0862 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1138 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median 2132400 915190 1217200 0 0 0 151790 68856 82933 299910 155090 144810 0 0 0 1680700 691240 989460 0 0 0 2271 3031 2367 11784;11785;11786 12024 12024 1 ALYDTFSAFGNILSCK GNIFIKNLDKSIDNKALYDTFSAFGNILSC LYDTFSAFGNILSCKVVCDENGSKGYGFVH K A L C K V 2 0 1 1 1 0 0 1 0 1 2 1 0 2 0 2 1 0 1 0 0 0 16 0 1805.8658 B1ANR0;Q13310;B1ANR1;H0YEQ8;H0Y5F5;P11940;E7EQV3;A0A087WTT1;E5RGH3;E5RJB9 P11940 114 129 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 2 0.0076063 29.936 By matching By MS/MS 1 1 1.3492 1.3475 17.852 2 Median 1.2289 1.1877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4811 1.5288 NaN 1 0 Median NaN NaN NaN 0 0 Median 2861400 1213600 1647800 463550 193270 270270 0 0 0 0 0 0 0 0 0 2397900 1020300 1377600 0 0 0 2272 1973;576;1151 2368 11787;11788 12025;12026 12025 2 ALYDYAGQEADELSFR DEESPRKAATGVRVRALYDYAGQEADELSF LYDYAGQEADELSFRAGEELLKMSEEDEQG R A L F R A 3 1 0 2 0 1 2 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 16 0 1846.8374 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 370 385 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2 1.7155E-05 84.289 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 2 1 0.972 1.0144 11.711 8 Median 0.89245 0.88161 NaN 1 0 Median 1.2826 1.1302 NaN 1 0 Median 0.95053 0.99354 4.7555 3 2 Median 1.3513 1.1787 11.624 2 0 Median 0.95854 0.96639 NaN 1 1 Median NaN NaN NaN 0 0 Median 16770000 8081400 8688700 1198900 647600 551280 526790 200700 326100 12646000 6079500 6566300 891160 366340 524820 1507500 787290 720180 0 0 0 2273 244 2369 11789;11790;11791;11792;11793;11794;11795;11796 12027;12028;12029;12030;12031;12032 12031 6 ALYDYEGQEHDELSFK PFDDDATSGTEVRVRALYDYEGQEHDELSF LYDYEGQEHDELSFKA______________ R A L F K A 1 0 0 2 0 1 3 1 1 0 2 1 0 1 0 1 0 0 2 0 0 0 16 0 1942.8585 A0A0U1RR22;Q9UNF0;H0Y923 A0A0U1RR22 435 450 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 3 0.0032264 26.781 By matching By matching By MS/MS By matching 1 1 1 1 1.2058 1.118 7.5372 4 Median 1.0414 0.98802 NaN 1 0 Median 1.298 1.1483 NaN 1 0 Median 1.1202 1.0885 NaN 1 0 Median 1.3696 1.1681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22296000 10296000 12001000 7757000 3826500 3930500 673180 312500 360680 11708000 5320600 6387200 2158600 836410 1322200 0 0 0 0 0 0 2274 307 2370 11797;11798;11799;11800 12033;12034 12034 2 ALYEAGER EDFGVNEDLADSDARALYEAGERRKGTDVN LADSDARALYEAGERRKGTDVNVFNTILTT R A L E R R 2 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 907.43995 P04083 P04083 205 212 ANXA1 Annexin A1 yes yes 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2387 1.0948 17.198 6 Median 1.3536 1.3491 NaN 1 0 Median 1.2146 1.0337 8.4684 2 0 Median 1.2354 1.2227 NaN 1 0 Median 1.0953 0.94987 19.746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59630000 26266000 33364000 11421000 4803300 6617500 41126000 18358000 22768000 4577900 1920900 2657000 2505300 1183000 1322300 0 0 0 0 0 0 2275 1844 2371 11801;11802;11803;11804;11805;11806 12035;12036;12037;12038;12039;12040;12041;12042;12043;12044 12036 10 ALYEDVILQPGTQEALK KYEHVLKCRLSNRQKALYEDVILQPGTQEA YEDVILQPGTQEALKSGHFVNVLSILVRLQ K A L L K S 2 0 0 1 0 2 2 1 0 1 3 1 0 0 1 0 1 0 1 1 0 0 17 0 1886.9989 Q96L91 Q96L91 1334 1350 EP400 E1A-binding protein p400 yes yes 2 2.328E-05 72.34 By MS/MS By matching 1 2 0.80218 0.79792 4.9548 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74609 0.79792 NaN 1 0 Median 0.84906 0.77479 6.5825 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10734000 5902200 4831400 0 0 0 0 0 0 10348000 5704400 4644100 385220 197860 187360 0 0 0 0 0 0 2276 3700 2372 11807;11808;11809 12045;12046 12046 2 ALYEHLTAK LMKSYVSEKDVTSAKALYEHLTAKNTKLDD DVTSAKALYEHLTAKNTKLDDLFLKRYASL K A L A K N 2 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1044.5604 P42704 P42704 1339 1347 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00066035 106.38 By MS/MS By MS/MS By MS/MS 1 1 1 1.4932 1.2549 44.764 3 Median 0.96725 0.93472 NaN 1 0 Median 1.4932 1.2549 NaN 1 0 Median 2.0898 2.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52148000 20971000 31177000 14060000 6324300 7736200 36082000 14014000 22068000 2005200 632640 1372500 0 0 0 0 0 0 0 0 0 2277 2315 2373 11810;11811;11812 12047;12048;12049;12050;12051 12051 5 ALYEQNQSDVNEAK AFNEDGLRQVLEEMKALYEQNQSDVNEAKS KALYEQNQSDVNEAKSGGRSDLIPTIKFRH K A L A K S 2 0 2 1 0 2 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1607.7427 Q14691 Q14691 38 51 GINS1 DNA replication complex GINS protein PSF1 yes yes 2 0.00092406 55.426 By MS/MS By MS/MS 1 1 0.97665 0.88578 5.1451 2 Median 0.90277 0.85414 NaN 1 0 Median 1.0566 0.9186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3727000 1936500 1790500 2600100 1209800 1390300 1126900 726730 400180 0 0 0 0 0 0 0 0 0 0 0 0 2278 2892 2374 11813;11814 12052;12053;12054;12055 12053 4 ALYEQSLHIK EIQMYTAQKNNKKLKALYEQSLHIKSAIPH NKKLKALYEQSLHIKSAIPHPLIMGVIREC K A L I K S 1 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1200.6503 P61201;B4DIH5;H0YKU5;H0YM03 P61201 216 225 COPS2 COP9 signalosome complex subunit 2 yes no 2;3 0.00024769 127.68 By MS/MS By matching By MS/MS By MS/MS 3 1 2 2 1.2465 1.1148 18.163 8 Median 1.0572 0.9887 8.0327 3 0 Plateau 1.2466 1.0851 NaN 1 0 Median 1.3859 1.3477 14.934 2 1 Median 1.3838 1.2438 11.659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55210000 23544000 31666000 16254000 7672400 8581500 1296700 589750 706910 16938000 6791300 10146000 20722000 8491000 12231000 0 0 0 0 0 0 2279 2548 2375 11815;11816;11817;11818;11819;11820;11821;11822 12056;12057;12058;12059;12060;12061;12062;12063;12064;12065 12065 10 ALYESELADAR SEKEEVTTREVSGIKALYESELADARRVLD SGIKALYESELADARRVLDETARERARLQI K A L A R R 3 1 0 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 11 0 1236.5986 Q03252 Q03252 94 104 LMNB2 Lamin-B2 yes yes 2 0.0001932 107.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 5 1.439 1.1926 19.234 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.971 0.97672 1.1971 2 0 Median 1.5251 1.2971 8.0242 2 1 Median 0.99437 1.0076 24.4 4 2 Median 1.4899 1.2137 16.043 5 0 Median 170000000 76945000 93050000 0 0 0 0 0 0 36271000 17173000 19098000 20274000 7836600 12438000 93365000 44207000 49157000 20086000 7728000 12358000 2280 2709 2376 11823;11824;11825;11826;11827;11828;11829;11830;11831;11832;11833;11834;11835 12066;12067;12068;12069;12070;12071;12072;12073;12074 12066 9 ALYESELADARR SEKEEVTTREVSGIKALYESELADARRVLD GIKALYESELADARRVLDETARERARLQIE K A L R R V 3 2 0 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 12 1 1392.6997 Q03252 Q03252 94 105 LMNB2 Lamin-B2 yes yes 2;3 1.0038E-40 223.84 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 7 3 1.0946 1.1802 26.367 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1755 1.3118 28.165 3 3 Median 1.5692 1.4637 NaN 1 1 Median 0.95699 1.0498 29.632 7 0 Median 1.6316 1.4425 7.5096 3 0 Plateau 234490000 112880000 121610000 0 0 0 0 0 0 39410000 17280000 22131000 4496300 1524400 2971900 170140000 86262000 83874000 20442000 7812700 12629000 2281 2709 2377 11836;11837;11838;11839;11840;11841;11842;11843;11844;11845;11846;11847;11848;11849 12075;12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088;12089;12090;12091;12092;12093 12084 19 ALYETELADAR TEREEVRGRELTGLKALYETELADARRALD TGLKALYETELADARRALDDTARERAKLQI K A L A R R 3 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 11 0 1250.6143 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 80 90 LMNB1 Lamin-B1 yes no 2 1.2118E-13 136.57 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 9 8 1.0687 1.0202 23.9 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7882 0.78298 23.286 2 0 Median 1.5892 1.352 15.244 2 0 Median 0.78735 0.796 13.59 7 3 Median 1.4825 1.201 13.061 7 1 Median 688120000 363210000 324910000 0 0 0 0 0 0 82193000 42470000 39723000 72221000 30423000 41798000 429120000 248020000 181110000 104580000 42302000 62283000 2282 2084 2378 11850;11851;11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863;11864;11865;11866;11867;11868;11869;11870 12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118 12098 25 ALYETELADARR TEREEVRGRELTGLKALYETELADARRALD GLKALYETELADARRALDDTARERAKLQIE K A L R R A 3 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 12 1 1406.7154 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 80 91 LMNB1 Lamin-B1 yes no 2;3 1.0792E-66 251.98 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 12 8 0.8855 0.97106 28.32 25 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1116 1.2404 41.963 2 0 Median 2.1493 2.0048 9.8431 3 0 Median 0.82188 0.89427 6.451 12 0 Median 1.2792 1.1436 12.913 8 1 Median 917020000 452300000 464720000 0 0 0 0 0 0 55812000 27826000 27986000 48508000 14275000 34234000 688560000 360510000 328060000 124140000 49689000 74446000 2283 2084 2379 11871;11872;11873;11874;11875;11876;11877;11878;11879;11880;11881;11882;11883;11884;11885;11886;11887;11888;11889;11890;11891;11892;11893;11894;11895 12119;12120;12121;12122;12123;12124;12125;12126;12127;12128;12129;12130;12131;12132;12133;12134;12135;12136;12137;12138;12139;12140;12141;12142;12143;12144;12145;12146;12147;12148;12149;12150;12151;12152 12124 34 ALYIHAQPLHSR HLQRSGERDCQEFYRALYIHAQPLHSRLPS FYRALYIHAQPLHSRLPSRHALRKFHITNH R A L S R L 2 1 0 0 0 1 0 0 2 1 2 0 0 0 1 1 0 0 1 0 0 0 12 0 1404.7626 Q96LW7 Q96LW7 83 94 C9orf89 Bcl10-interacting CARD protein yes yes 3 0.00016723 67.456 By MS/MS By matching 1 1 0.94532 0.86373 18.523 2 Median 0.75896 0.7577 NaN 1 0 Median 1.1774 0.9846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4134000 2246400 1887700 3519600 1983000 1536600 614450 263350 351110 0 0 0 0 0 0 0 0 0 0 0 0 2284 3702 2380 11896;11897 12153;12154 12153 2 ALYLIATNGTPELQNPEK MVEGEPPYLNENPLRALYLIATNGTPELQN LIATNGTPELQNPEKLSPIFRDFLNRCLEM R A L E K L 2 0 2 0 0 1 2 1 0 1 3 1 0 0 2 0 2 0 1 0 0 0 18 0 1971.0313 Q13177;Q13153;E9PM17;B3KNX7;H0YCG5 Q13177 451 468 PAK2;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase no no 2 5.1488E-08 94.191 By MS/MS By matching 1 1 0.66071 0.5953 8.2722 2 Median 0.66631 0.63116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65515 0.56147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8571500 5019900 3551600 8258900 4882200 3376700 0 0 0 0 0 0 312580 137710 174870 0 0 0 0 0 0 2285 2794;2791 2381 11898;11899 12155;12156 12156 2 ALYLSDNDFEILPPDIGK ENSLPGNFFYLTTLRALYLSDNDFEILPPD LSDNDFEILPPDIGKLTKLQILSLRDNDLI R A L G K L 1 0 1 3 0 0 1 1 0 2 3 1 0 1 2 1 0 0 1 0 0 0 18 0 2019.0201 Q15404 Q15404 138 155 RSU1 Ras suppressor protein 1 yes yes 2 0.0038125 29.299 By MS/MS 1 0.69846 0.67944 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69846 0.67944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292400 747150 545290 0 0 0 0 0 0 1292400 747150 545290 0 0 0 0 0 0 0 0 0 2286 2949 2382 11900 12157 12157 1 ALYNQYIHFK LMSDKTFPQNPVELKALYNQYIHFKETEIL PVELKALYNQYIHFKETEILAKEREKGRIE K A L F K E 1 0 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 2 0 0 0 10 0 1295.6663 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 346 355 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.0027464 44.318 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1428 1.0944 2.1647 4 Median 1.0944 1.0948 NaN 1 0 Median 1.209 1.0581 NaN 1 0 Median 1.0134 1.0939 NaN 1 0 Median 1.1933 1.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14788000 7008600 7779200 8504800 3978300 4526500 2084800 848620 1236200 4103300 2146600 1956800 94872 35154 59717 0 0 0 0 0 0 2287 1220 2383 11901;11902;11903;11904 12158;12159;12160;12161 12160 4 ALYNQYLQFK TMSERTFPNNPVELKALYNQYLQFKETEIP PVELKALYNQYLQFKETEIPPKETEKSKIK K A L F K E 1 0 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 0 2 0 0 0 10 0 1286.6659 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9 E9PHM6 308 317 DST Dystonin no no 2 0.001468 79.451 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2852 1.2183 5.03 4 Median 1.2591 1.255 NaN 1 0 Median 1.3119 1.1616 NaN 1 0 Median 1.0993 1.1827 NaN 1 1 Median 1.3943 1.2937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12007000 6103800 5903100 6145700 3420800 2724900 569930 209360 360570 5131400 2422200 2709200 159760 51324 108430 0 0 0 0 0 0 2288 934 2384 11905;11906;11907;11908 12162;12163;12164 12163 3 ALYPVIPR GLNRRELGHGALAEKALYPVIPRDFPFTIR HGALAEKALYPVIPRDFPFTIRVTSEVLES K A L P R D 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 0 0 0 1 1 0 0 8 0 927.55419 Q8TCS8 Q8TCS8 457 464 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.0062714 71.949 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0005 0.9392 3.2548 4 Median 0.92701 0.88854 NaN 1 0 Median 1.0798 0.93566 NaN 1 0 Median 0.8931 0.94274 NaN 1 0 Median 1.1176 0.958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12722000 6337400 6384900 4846200 2478600 2367500 3434500 1630800 1803800 3662900 1886900 1775900 778700 341050 437660 0 0 0 0 0 0 2289 3467 2385 11909;11910;11911;11912 12165;12166;12167;12168 12165 4 ALYTLVNK HTWIRQCLKYDAQDKALYTLVNKVQYGIFP KYDAQDKALYTLVNKVQYGIFPDNFTFNLL K A L N K V 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 8 0 920.53312 G5EA06;Q92552;D6RH20;D6RJC7 G5EA06 69 76 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.014536 50.898 By MS/MS By matching By matching 1 1 1 0.97786 0.97009 17.073 3 Median 0.97786 0.91216 NaN 1 0 Median 1.472 1.2582 NaN 1 0 Median 0.90181 0.97009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17636000 8658200 8977600 8148600 4047400 4101200 5988000 2676800 3311300 3499100 1934100 1565100 0 0 0 0 0 0 0 0 0 2290 1131 2386 11913;11914;11915 12169;12170 12169 2 ALYTYESK RTLQSLLTPQPPLLKALYTYESKMAFLTRV PQPPLLKALYTYESKMAFLTRVAKIQQGAL K A L S K M 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 2 0 0 0 8 0 973.47566 Q92621;U3KPX2 Q92621 1549 1556 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.024929 63.48 By MS/MS 2 1.0823 1.2029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0823 1.2029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6757300 3253500 3503800 0 0 0 0 0 0 6757300 3253500 3503800 0 0 0 0 0 0 0 0 0 2291 3547 2387 11916;11917 12171;12172 12171 2 ALYYDLISNPDIHGTYK LSLGAEQRTESNIHRALYYDLISNPDIHGT YYDLISNPDIHGTYKDLLASVTAPQKNLKS R A L Y K D 1 0 1 2 0 0 0 1 1 2 2 1 0 0 1 1 1 0 3 0 0 0 17 0 1981.9785 CON__Q95121 CON__Q95121 105 121 yes yes 3 0.002614 42.338 By MS/MS 1 0.33774 0.33332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33774 0.33332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4479000 3423300 1055700 0 0 0 0 0 0 4479000 3423300 1055700 0 0 0 0 0 0 0 0 0 + 2292 791 2388 11918 12173 12173 1 ALYYLQIHPQELR VASCNSSQVVVAVGRALYYLQIHPQELRQI GRALYYLQIHPQELRQISHTEMEHEVACLD R A L L R Q 1 1 0 0 0 2 1 0 1 1 3 0 0 0 1 0 0 0 2 0 0 0 13 0 1642.8831 Q16531;F5GY55 Q16531 515 527 DDB1 DNA damage-binding protein 1 yes no 2;3 2.5039E-06 140.49 By MS/MS By matching By MS/MS By MS/MS 5 1 5 2 1.0195 0.97947 23.443 13 Median 1.0274 0.99702 9.1792 5 0 Median 0.99947 0.85116 NaN 1 0 Median 0.72962 0.77731 8.0065 5 1 Median 1.6719 1.4239 10.274 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106420000 56691000 49733000 33970000 15559000 18411000 1136900 565940 571000 67525000 39115000 28410000 3792200 1450700 2341600 0 0 0 0 0 0 2293 2985 2389 11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931 12174;12175;12176;12177;12178;12179;12180;12181;12182;12183;12184;12185;12186;12187;12188;12189;12190 12176 17 AMAAEAEASR RVEIKDVKLPVQLQRAMAAEAEASREARAK VQLQRAMAAEAEASREARAKVIAAEGEMNA R A M S R E 5 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 10 0 1005.4549 P27105 P27105 206 215 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.0050445 51.066 By matching By MS/MS 1 2 0.86857 0.74195 14.65 3 Median 0.89776 0.86111 NaN 1 0 Median 0.80791 0.6904 10.186 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1571900 786490 785430 397240 199640 197610 1174700 586850 587820 0 0 0 0 0 0 0 0 0 0 0 0 2294 2150 2390 11932;11933;11934 12191;12192;12193;12194 12194 4 AMAAPESGLEVR GRGLSVHTDMASVTKAMAAPESGLEVRDRM VTKAMAAPESGLEVRDRMWLKITIPNAFLG K A M V R D 3 1 0 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 12 0 1229.6074 I3L2N2;O14641;I3L0Z8 I3L2N2 423 434 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes no 2 0.00059794 71.349 By MS/MS 1 0.37378 0.39839 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37378 0.39839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6002400 4255000 1747400 0 0 0 0 0 0 6002400 4255000 1747400 0 0 0 0 0 0 0 0 0 2295 1284 2391 11935 12195 12195 1 AMAATLGAGTPPRPQAR PVPGTNSTEQASVPRAMAATLGAGTPPRPQ AATLGAGTPPRPQARSIAGVYVEASGQAQS R A M A R S 5 2 0 0 0 1 0 2 0 0 1 0 1 0 3 0 2 0 0 0 0 0 17 1 1664.8781 P58107 P58107 25 41 EPPK1 Epiplakin yes yes 2;3 2.2254E-08 96.993 By MS/MS By MS/MS 3 2 0.69834 0.71626 33.908 5 Median 0.69834 0.74681 7.776 3 0 Median 0.53018 0.48196 43.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32896000 19049000 13847000 14012000 7587800 6424400 18884000 11461000 7422300 0 0 0 0 0 0 0 0 0 0 0 0 2296 2520 2392 11936;11937;11938;11939;11940 12196;12197;12198;12199;12200;12201;12202 12201 7 AMAAVPQDVVR ALRQSAGAVVIILPRAMAAVPQDVVRQFME ILPRAMAAVPQDVVRQFMEIEPEMLAMETA R A M V R Q 3 1 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 3 0 0 11 0 1155.607 Q969V3;K7EMW4 Q969V3 115 125 NCLN Nicalin yes no 2 0.0001941 95.502 By MS/MS By MS/MS 1 1 1.309 1.1807 31.503 2 Median 1.5421 1.4753 NaN 1 0 Median 1.1111 0.94492 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14816000 6684100 8132300 10693000 4693600 5999900 4122900 1990500 2132400 0 0 0 0 0 0 0 0 0 0 0 0 2297 3589 2393 11941;11942 12203;12204;12205 12204 3 AMADALLER PMFREYSLQVLKNARAMADALLERGYSLVS VLKNARAMADALLERGYSLVSGGTDNHLVL R A M E R G 3 1 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 988.50117 P34897;H0YIZ0;G3V2Y4 P34897 360 368 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.00055831 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 4 2 1 3 1.2726 1.1654 23.935 15 Median 1.0636 0.98943 26.288 3 1 Plateau 1.5248 1.2901 26.527 2 0 Median 1.0231 1.0186 13.964 4 0 Median 1.4232 1.2186 5.526 2 0 Median 1.557 1.5601 NaN 1 0 Median 1.6382 1.4107 9.8053 3 0 Plateau 148420000 69867000 78550000 70848000 35815000 35033000 16770000 7053500 9716900 30848000 15235000 15613000 20019000 7830000 12189000 4382200 1836100 2546100 5550200 2097300 3452900 2298 2228 2394;2395 11943;11944;11945;11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956;11957 12206;12207;12208;12209;12210;12211;12212;12213;12214;12215;12216;12217;12218;12219 12207 968 14 AMADELSEK VPIREQGNIYKPNNKAMADELSEKQVYDAH YKPNNKAMADELSEKQVYDAHTKEIDLVNR K A M E K Q 2 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 9 0 992.44846 Q03135;E9PCT5 Q03135 31 39 CAV1 Caveolin-1;Caveolin yes no 2 0.015183 43.808 By MS/MS By matching 1 1 1.15 1.044 0.93175 2 Median 1.1111 1.0509 NaN 1 0 Median 1.1904 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3402300 1545600 1856700 2541900 1101800 1440100 860410 443760 416650 0 0 0 0 0 0 0 0 0 0 0 0 2299 2707 2396 11958;11959 12220;12221 12221 2 AMADFTTWK ALVESLEYVRGEISKAMADFTTWKTHLLTS RGEISKAMADFTTWKTHLLTSDSQGGNQML K A M W K T 2 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 9 0 1069.4903 Q9NU22 Q9NU22 4473 4481 MDN1 Midasin yes yes 2 0.0045216 60.436 By matching By MS/MS By matching By matching 1 1 1 1 1.1858 1.1533 12.235 4 Median NaN NaN NaN 0 0 Median 1.2793 1.1312 NaN 1 0 Median 1.0991 1.1759 NaN 1 0 Median 1.3612 1.2528 NaN 1 0 Median 0.90119 0.94218 NaN 1 0 Median NaN NaN NaN 0 0 Median 11307000 5628000 5678700 0 0 0 627660 273170 354480 9368000 4679500 4688500 276720 103560 173150 1034300 571700 462600 0 0 0 2300 4112 2397 11960;11961;11962;11963 12222;12223 12222 2 AMADPEVQQIMSDPAMR AQYNRHDSPEDVKRRAMADPEVQQIMSDPA ADPEVQQIMSDPAMRLILEQMQKDPQALSE R A M M R L 3 1 0 2 0 2 1 0 0 1 0 0 3 0 2 1 0 0 0 1 0 0 17 0 1888.8481 P31948;H0YGI8 P31948 489 505 STIP1 Stress-induced-phosphoprotein 1 yes no 2;3 2.5296E-12 150.21 By MS/MS By MS/MS By matching By matching 3 3 2 2 0.88092 0.81421 10.966 10 Median 0.86079 0.8174 2.8888 3 0 Median 0.87513 0.75623 4.5111 3 0 Median 0.75368 0.79607 26.293 2 0 Median 1.0219 0.87614 6.1355 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54543000 28242000 26301000 43051000 22253000 20797000 6567500 3446700 3120800 4326600 2276600 2050000 598630 265530 333110 0 0 0 0 0 0 2301 2212 2398;2399 11964;11965;11966;11967;11968;11969;11970;11971;11972;11973 12224;12225;12226;12227;12228;12229;12230;12231;12232 12228 954 9 AMAEDLGDQDK PPNYAMKKTQLLKEKAMAEDLGDQDKAKQI LKEKAMAEDLGDQDKAKQIQDQLNELEERA K A M D K A 2 0 0 3 0 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1191.5078 Q92541;H0YKX1 Q92541 521 531 RTF1 RNA polymerase-associated protein RTF1 homolog yes no 2 0.00029355 72.643 By matching By MS/MS 1 1 1.0688 0.94631 13.105 2 Median NaN NaN NaN 0 0 Median 1.1502 1.0382 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99308 0.86256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1784300 831570 952770 0 0 0 321220 160150 161070 0 0 0 1463100 671420 791700 0 0 0 0 0 0 2302 3534 2400 11974;11975 12233;12234 12234 2 AMAPLHPHPAGMR GWILTTECFQVPQQKAMAPLHPHPAGMRIN QKAMAPLHPHPAGMRINVVNNHQAKQNLYD K A M M R I 3 1 0 0 0 0 0 1 2 0 1 0 2 0 3 0 0 0 0 0 0 0 13 0 1384.6856 F6VRR5;Q9BY77;F8WCX5 F6VRR5 173 185 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 0.0009511 43.991 By MS/MS By MS/MS By matching 1 1 1 0.75648 0.71958 9.8828 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63997 0.62935 NaN 1 0 Median 0.82974 0.71958 NaN 1 0 Median 0.75648 0.76321 NaN 1 0 Median NaN NaN NaN 0 0 Median 20831000 12246000 8585200 0 0 0 0 0 0 14663000 8981600 5681900 4736500 2505400 2231100 1431400 759170 672180 0 0 0 2303 1051 2401 11976;11977;11978 12235;12236;12237;12238 12238 4 AMASLQNERDHLWNELEK SQLEDSYNQVQSFSKAMASLQNERDHLWNE SLQNERDHLWNELEKFRKSEEGKQRSAAQP K A M E K F 2 1 2 1 0 1 3 0 1 0 3 1 1 0 0 1 0 1 0 0 0 0 18 1 2183.043 Q14789 Q14789 2837 2854 GOLGB1 Golgin subfamily B member 1 yes yes 3;4 2.7776E-06 56.851 By MS/MS By matching 2 1 1.3517 1.3204 13.233 3 Median 1.2524 1.2988 18.665 2 0 Median 1.3517 1.3204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21782000 8796800 12985000 20935000 8471600 12463000 846900 325140 521750 0 0 0 0 0 0 0 0 0 0 0 0 2304 2900 2402 11979;11980;11981 12239;12240;12241 12240 3 AMAVLESLR LEACVRDVLNDTAPRAMAVLESLRVIITNF NDTAPRAMAVLESLRVIITNFPAAKSLDIQ R A M L R V 2 1 0 0 0 0 1 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 9 0 988.53755 P47897;A0A1B0GVU9;B4DDN1;H7C0R3 P47897 568 576 QARS Glutamine--tRNA ligase yes no 2 0.00060862 109.86 By MS/MS By MS/MS 1 2 1.0242 0.95913 5.0633 3 Median 1.0138 0.95913 NaN 1 0 Median 1.0846 0.9467 7.0809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17797000 8561000 9236500 13045000 6305700 6739200 4752600 2255300 2497300 0 0 0 0 0 0 0 0 0 0 0 0 2305 2356 2403 11982;11983;11984 12242;12243;12244;12245 12243 4 AMDDKRFDEATQLR LPLMECVQMTKEVQKAMDDKRFDEATQLRG KAMDDKRFDEATQLRGGSFENNWNIYKLLA K A M L R G 2 2 0 3 0 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 14 2 1694.8046 P17858 P17858 361 374 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 3 0.00014877 69.92 By MS/MS 2 1.1128 1.0977 12.896 2 Median 1.1128 1.0977 12.896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17579000 8979300 8599400 17579000 8979300 8599400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2306 2047 2404 11985;11986 12246;12247;12248 12246 3 AMDLAQAGSTVESK FTTYFLPLANTLKSKAMDLAQAGSTVESKI KAMDLAQAGSTVESKIYDTLQWQMWTLLPG K A M S K I 3 0 0 1 0 1 1 1 0 0 1 1 1 0 0 2 1 0 0 1 0 0 14 0 1406.6711 Q5JTH9 Q5JTH9 600 613 RRP12 RRP12-like protein yes yes 2 5.6681E-07 120.96 By MS/MS By MS/MS 1 2 1.1063 1.0612 18.876 3 Median NaN NaN NaN 0 0 Median 1.1063 0.95159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.161 1.2076 18.28 2 0 Median NaN NaN NaN 0 0 Median 25121000 11489000 13632000 0 0 0 4029100 1826900 2202100 0 0 0 0 0 0 21092000 9661900 11430000 0 0 0 2307 3052 2405 11987;11988;11989 12249;12250;12251;12252;12253 12249 5 AMDLVQEEFLQR TWNHPDQDTEAGFKRAMDLVQEEFLQRLDF FKRAMDLVQEEFLQRLDFYQHSWLPARALV R A M Q R L 1 1 0 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 12 0 1477.7235 Q9HB07;F8VQQ3;F8VR84 Q9HB07 220 231 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 1.1353E-07 125.48 By MS/MS By MS/MS By matching 1 3 1 1.0649 0.9452 19.826 5 Median 0.94769 0.9452 NaN 1 0 Median 1.176 1.0259 18.656 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9092 0.77292 NaN 1 0 Median 34689000 16444000 18245000 13209000 6613000 6595600 21347000 9747400 11599000 0 0 0 0 0 0 0 0 0 133530 83075 50452 2308 4014 2406 11990;11991;11992;11993;11994 12254;12255;12256;12257 12256 4 AMDPAVPNMMIDAAK KTMLETEEGILLLVRAMDPAVPNMMIDAAK AMDPAVPNMMIDAAKLLSALCILPQPEDMN R A M A K L 4 0 1 2 0 0 0 0 0 1 0 1 3 0 2 0 0 0 0 1 0 0 15 0 1573.7303 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 247 261 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.00036102 58.674 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1.0227 1.0503 57.911 5 Median 0.82116 0.79192 NaN 1 0 Median 0.91226 0.782 NaN 1 0 Median 1.0227 1.1073 NaN 1 0 Median 1.1683 1.0503 NaN 1 0 Median 3.0377 3.2005 NaN 1 0 Median NaN NaN NaN 0 0 Median 23320000 11789000 11530000 16012000 9298400 6713700 955980 463600 492380 3113400 1389200 1724100 230240 106630 123600 3007800 531210 2476600 0 0 0 2309 274 2407 11995;11996;11997;11998;11999 12258;12259 12258 2 AMDQEITVNPQFVQK DQEMLKCIELDERLKAMDQEITVNPQFVQK AMDQEITVNPQFVQKSMGSQEDDSGNKPSS K A M Q K S 1 0 1 1 0 3 1 0 0 1 0 1 1 1 1 0 1 0 0 2 0 0 15 0 1746.8611 Q9UNS2;H7C3P9 Q9UNS2 392 406 COPS3 COP9 signalosome complex subunit 3 yes no 2 1.3408E-07 97.813 By MS/MS By MS/MS 2 3 1.2534 1.2215 19.19 5 Median 1.0962 1.017 18.485 2 1 Median NaN NaN NaN 0 0 Median 1.2534 1.2944 10.899 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78109000 37139000 40970000 31523000 15492000 16031000 0 0 0 46586000 21648000 24938000 0 0 0 0 0 0 0 0 0 2310 4350 2408;2409 12000;12001;12002;12003;12004 12260;12261;12262;12263;12264;12265 12263 1928 6 AMDSDWFAENYMGR EFHEAFSGQILANFKAMDSDWFAENYMGRK KAMDSDWFAENYMGRKTKVGLPPLEKFNNW K A M G R K 2 1 1 2 0 0 1 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 14 0 1691.6708 P55084;F5GZQ3;B5MD38 P55084 392 405 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 9.3031E-06 91.03 By matching By MS/MS By matching 1 2 2 1.4081 1.2358 14.859 5 Median NaN NaN NaN 0 0 Median 1.4081 1.2358 NaN 1 0 Median 1.1105 1.1149 8.1169 2 0 Median 1.6894 1.4805 0.71103 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9621500 4574000 5047500 0 0 0 619300 220610 398690 8489900 4199100 4290800 512240 154240 358010 0 0 0 0 0 0 2311 2496 2410;2411 12005;12006;12007;12008;12009 12266;12267;12268 12267 1182 3 AMDTPKPAVSDEKNINTFVETPVQK EEFLALRKRTPSAGKAMDTPKPAVSDEKNI DEKNINTFVETPVQKLDLLGNLPGSKRQPQ K A M Q K L 2 0 2 2 0 1 2 0 0 1 0 3 1 1 3 1 3 0 0 3 0 0 25 2 2758.3847 P46013 P46013 2386 2410 MKI67 Antigen KI-67 yes yes 4 1.2621E-14 73.981 By MS/MS 1 0.60665 0.75319 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60665 0.75319 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23076000 15760000 7315600 0 0 0 0 0 0 23076000 15760000 7315600 0 0 0 0 0 0 0 0 0 2312 2335 2412 12010 12269 12269 1 AMDVYQK TRKAAALEAMKDYTKAMDVYQKALDLDSSC EAMKDYTKAMDVYQKALDLDSSCKEAADGY K A M Q K A 1 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 7 0 853.40039 P31948;H0YGI8 P31948 447 453 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0081656 86.512 By MS/MS By MS/MS 1 1 1.2543 1.118 21.239 2 Median 1.364 1.2991 NaN 1 0 Median 1.1535 0.96206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31942000 14134000 17808000 6587600 2802700 3784900 25355000 11332000 14023000 0 0 0 0 0 0 0 0 0 0 0 0 2313 2212 2413 12011;12012 12270;12271;12272;12273 12272 4 AMEAAQLADDLK ELGLRTQALEMNKRKAMEAAQLADDLKAQL KRKAMEAAQLADDLKAQLELAQKKLHDFQD K A M L K A 4 0 0 2 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 12 0 1274.6177 Q5VTR2 Q5VTR2 837 848 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.0095072 37.476 By MS/MS 1 1.1785 0.9878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1785 0.9878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1102600 545020 557610 0 0 0 0 0 0 0 0 0 1102600 545020 557610 0 0 0 0 0 0 2314 3112 2414 12013 12274 12274 1 AMEAEAAGLR QEETRAKLALGSRVRAMEAEAAGLREQLEE GSRVRAMEAEAAGLREQLEEEAAARERAGR R A M L R E 4 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1017.4913 Q7Z406;A0A0C4DFM8 Q7Z406 1357 1366 MYH14 Myosin-14 yes no 2 0.0003634 82.452 By MS/MS 1 1.2001 1.0184 NaN 1 Median NaN NaN NaN 0 0 Median 1.2001 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3127400 1351400 1776000 0 0 0 3127400 1351400 1776000 0 0 0 0 0 0 0 0 0 0 0 0 2315 3242 2415 12014 12275 12275 1 AMEAEAAGLREQLEEEAAAR QEETRAKLALGSRVRAMEAEAAGLREQLEE AAGLREQLEEEAAARERAGRELQTAQAQLS R A M A R E 7 2 0 0 0 1 6 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 20 1 2144.0168 Q7Z406;A0A0C4DFM8 Q7Z406 1357 1376 MYH14 Myosin-14 yes no 3 6.0993E-11 94.384 By MS/MS 1 0.89201 0.95392 NaN 1 Median 0.89201 0.95392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6064100 3257100 2807000 6064100 3257100 2807000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2316 3242 2416 12015 12276;12277 12276 2 AMEAVAAQGK IKPMQFLGDEETVRKAMEAVAAQGKAKK__ ETVRKAMEAVAAQGKAKK____________ K A M G K A 4 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 10 0 974.48552 P18669;P15259 P18669 242 251 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 2 0.00035707 94.114 By MS/MS By MS/MS By MS/MS 2 4 1 1.2603 1.1061 31.7 7 Median 1.1633 1.1181 18.139 2 1 Median 1.5754 1.4061 39.064 4 0 Median 1.1493 1.1061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21479000 9789000 11690000 14088000 6574800 7512800 5405000 2340800 3064200 1986400 873410 1113000 0 0 0 0 0 0 0 0 0 2317 2060 2417 12016;12017;12018;12019;12020;12021;12022 12278;12279;12280;12281;12282;12283;12284 12284 7 AMEDPGVRDTMLQALR IKVDPLFTELLNGIRAMEDPGVRDTMLQAL MEDPGVRDTMLQALRFVIQGAGAKVDAVIR R A M L R F 2 2 0 2 0 1 1 1 0 0 2 0 2 0 1 0 1 0 0 1 0 0 16 1 1801.8815 Q92616 Q92616 2394 2409 GCN1L1 Translational activator GCN1 yes yes 3 0.0069308 25.59 By MS/MS 1 0.81248 0.86887 NaN 1 Median 0.81248 0.86887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13137000 6330600 6806100 13137000 6330600 6806100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2318 3544 2418 12023 12285 12285 1 AMEFVDVTESNAR ASTAFNLQVATPGGKAMEFVDVTESNARWV GKAMEFVDVTESNARWVQDFRLKAYASPAK K A M A R W 2 1 1 1 0 0 2 0 0 0 0 0 1 1 0 1 1 0 0 2 0 0 13 0 1467.6664 E9PQD8;E9PLI5;Q8NB37 E9PQD8 50 62 PDDC1 Parkinson disease 7 domain-containing protein 1 yes no 2 7.4978E-07 116.23 By MS/MS By MS/MS By MS/MS 1 1 1 1.3342 1.2666 24.605 3 Plateau 1.3342 1.2666 NaN 1 0 Median 0.91458 0.77522 NaN 1 0 Median 1.0711 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22317000 9564500 12753000 16389000 6638500 9750300 2617400 1289800 1327600 3311200 1636200 1675000 0 0 0 0 0 0 0 0 0 2319 958 2419 12024;12025;12026 12286;12287;12288;12289;12290;12291 12287 6 AMEGIFMKPSELLK EVHGMAQPSQNNYWKAMEGIFMKPSELLKA KAMEGIFMKPSELLKAEAHHAEL_______ K A M L K A 1 0 0 0 0 0 2 1 0 1 2 2 2 1 1 1 0 0 0 0 0 0 14 1 1592.8306 Q99470 Q99470 190 203 SDF2 Stromal cell-derived factor 2 yes yes 2 0.013577 40.589 By MS/MS By matching By matching 1 1 1 0.92085 0.888 12.288 3 Median 0.87286 0.888 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92085 0.93506 NaN 1 0 Median 0.92109 0.74005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8522600 4258700 4263900 6955700 3509700 3445900 0 0 0 1453000 703300 749710 113930 45661 68269 0 0 0 0 0 0 2320 3746 2420 12027;12028;12029 12292 12292 1 AMENIGELKK RKERVEKWREEQRKKAMENIGELKKEIEEM EQRKKAMENIGELKKEIEEMKQGKKWSLED K A M K K E 1 0 1 0 0 0 2 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 10 1 1131.5958 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 178 187 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0094795 48.794 By MS/MS 1 0.70586 0.80941 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70586 0.80941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589900 3031400 1558500 0 0 0 0 0 0 4589900 3031400 1558500 0 0 0 0 0 0 0 0 0 2321 3216 2421 12030 12293;12294 12293 2 AMETEVLETR MDGRGGRDSRAMETRAMETEVLETRVMERR AMETRAMETEVLETRVMERRGMETCAMETR R A M T R V 1 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 10 0 1177.5649 Q9H0L4 Q9H0L4 422 431 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 0.0005812 83.948 By MS/MS 1 0.88497 0.90781 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88497 0.90781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7157400 3323600 3833900 0 0 0 0 0 0 7157400 3323600 3833900 0 0 0 0 0 0 0 0 0 2322 3927 2422 12031 12295;12296 12296 1853 2 AMEVDERPTEQYSDIGGLDK LILETLPTEYDSRVKAMEVDERPTEQYSDI ERPTEQYSDIGGLDKQIQELVEAIVLPMNH K A M D K Q 1 1 0 3 0 1 3 2 0 1 1 1 1 0 1 1 1 0 1 1 0 0 20 1 2252.0267 R4GNH3;P17980;E9PM69;E9PMD8;E9PN50 R4GNH3 158 177 PSMC3 26S protease regulatory subunit 6A yes no 3 4.3953E-11 95.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.98653 0.98471 16.394 6 Median 1.1031 1.1381 24.853 2 0 Median 1.0868 1.004 20.358 2 0 Median 1.0005 1.0157 NaN 1 0 Median 0.97278 0.93217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97460000 42170000 55290000 66235000 27251000 38984000 7734300 3598900 4135400 17593000 8529600 9063100 5898300 2790700 3107600 0 0 0 0 0 0 2323 2050 2423 12032;12033;12034;12035;12036;12037 12297;12298;12299;12300;12301;12302;12303;12304 12298 8 AMEVDIEERPK VDPNRAVPLRKRKVKAMEVDIEERPKELVR RKVKAMEVDIEERPKELVRKPYVLNDLEAE K A M P K E 1 1 0 1 0 0 3 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 11 1 1315.6442 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1 D6RIC3 75 85 NOP16 Nucleolar protein 16 yes no 2;3 7.6047E-05 87.913 By matching By MS/MS 1 2 1.1426 1.0111 34.586 3 Plateau NaN NaN NaN 0 0 Median 0.56573 0.53061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0821 0.95915 7.4661 2 1 Median 7723200 3580300 4142900 0 0 0 1129300 638840 490440 0 0 0 0 0 0 0 0 0 6593900 2941400 3652500 2324 136 2424 12038;12039;12040 12305;12306 12305 2 AMEWITAK PSPFDRNFGTKISARAMEWITAKLKEARGR GTKISARAMEWITAKLKEARGRGKKFTTDD R A M A K L 2 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 8 0 948.47389 Q01813;B1APP6;H0Y757 Q01813 693 700 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0054254 75.854 By MS/MS 1 1.317 1.2016 NaN 1 Median 1.317 1.2016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9382600 3721100 5661500 9382600 3721100 5661500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2325 2692 2425 12041 12307 12307 1 AMFEQMR ______________________________ ______________________________ M A M M R A 1 1 0 0 0 1 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 7 0 911.39934 K7ES31;K7ERF1;Q9UBQ5;K7EQM4;A0A087WVB9 K7ES31 2 8 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 2 0.014808 74.335 By MS/MS By MS/MS By matching 3 1 1 1.1992 1.137 18.768 5 Median 1.065 1.0255 8.3147 3 0 Median NaN NaN NaN 0 0 Median 1.2694 1.2154 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6078 1.5636 NaN 1 0 Median NaN NaN NaN 0 0 Median 17644000 7811900 9832200 12346000 5627200 6718600 0 0 0 4378100 1855600 2522500 0 0 0 920270 329090 591180 0 0 0 2326 1399 2426 12042;12043;12044;12045;12046 12308;12309;12310;12311 12310 4 AMFLQPDLDSLVDFSTNNQK FLSPPALQGYVAWLRAMFLQPDLDSLVDFS PDLDSLVDFSTNNQKKAQDSSLHMPERAVF R A M Q K K 1 0 2 3 0 2 0 0 0 0 3 1 1 2 1 2 1 0 0 1 0 0 20 0 2282.0889 Q9BQG0;I3L1L3 Q9BQG0 412 431 MYBBP1A Myb-binding protein 1A yes no 3 0.00036658 31.462 By MS/MS 1 0.52091 0.56357 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52091 0.56357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2849100 1450700 1398400 0 0 0 0 0 0 2849100 1450700 1398400 0 0 0 0 0 0 0 0 0 2327 3789 2427 12047 12312 12312 1 AMFLQPDLDSLVDFSTNNQKK FLSPPALQGYVAWLRAMFLQPDLDSLVDFS DLDSLVDFSTNNQKKAQDSSLHMPERAVFR R A M K K A 1 0 2 3 0 2 0 0 0 0 3 2 1 2 1 2 1 0 0 1 0 0 21 1 2410.1839 Q9BQG0;I3L1L3 Q9BQG0 412 432 MYBBP1A Myb-binding protein 1A yes no 3 0.0045758 23.726 By MS/MS 1 1.0757 1.2312 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0757 1.2312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3559400 1859300 1700200 0 0 0 0 0 0 3559400 1859300 1700200 0 0 0 0 0 0 0 0 0 2328 3789 2428 12048 12313;12314 12313 2 AMGAAQVVVTDLSATR CGAGPIGMVTLLVAKAMGAAQVVVTDLSAT MGAAQVVVTDLSATRLSKAKEIGADLVLQI K A M T R L 4 1 0 1 0 1 0 1 0 0 1 0 1 0 0 1 2 0 0 3 0 0 16 0 1588.8243 Q00796;H0YLA4 Q00796 194 209 SORD Sorbitol dehydrogenase yes no 2;3 1.3882E-06 90.653 By MS/MS By matching By MS/MS 3 3 2 1.1918 1.1151 26.209 8 Median 1.2199 1.2227 33.978 3 1 Median 1.2776 1.1048 9.4747 3 0 Median 0.93923 0.96007 18.018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24549000 11173000 13376000 16224000 7111500 9112700 4503300 1892600 2610700 3821400 2169200 1652300 0 0 0 0 0 0 0 0 0 2329 2679 2429;2430 12049;12050;12051;12052;12053;12054;12055;12056 12315;12316;12317;12318;12319;12320;12321 12316 1354 7 AMGDAEIKDGERLPLAVK IIWAKHSEVQQANLKAMGDAEIKDGERLPL DAEIKDGERLPLAVKDMGSCEIYPQTIQHN K A M V K D 3 1 0 2 0 0 2 2 0 1 2 2 1 0 1 0 0 0 0 1 0 0 18 2 1912.0088 P35606 P35606 329 346 COPB2 Coatomer subunit beta yes yes 4 0.019784 18.234 By MS/MS 1 0.90086 0.98036 NaN 1 Median 0.90086 0.98036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8049900 4027500 4022300 8049900 4027500 4022300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2330 2246 2431 12057 12322;12323 12322 2 AMGIMNSFVNDIFER KVLKQVHPDTGISSKAMGIMNSFVNDIFER AMGIMNSFVNDIFERIAGEASRLAHYNKRS K A M E R I 1 1 2 1 0 0 1 1 0 2 0 0 2 2 0 1 0 0 0 1 0 0 15 0 1742.812 Q16778;P33778;P23527;P06899;Q8N257;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 59 73 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2 1.7044E-162 271.65 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 7 3 33 24 1.0386 1.0143 19.967 77 Median 1.2692 1.2318 19.073 6 0 Median 1.4662 1.2761 25.954 8 1 Median 1.0268 1.0325 7.398 7 0 Median 1.6601 1.3782 2.2269 3 0 Plateau 0.93796 0.95493 6.7774 30 8 Median 1.3135 1.026 23.072 23 5 Median 35262000000 16717000000 18544000000 10759000 4627900 6130800 7000700 2735000 4265600 78797000 37907000 40891000 5492400 1938100 3554300 17508000000 9355700000 8152000000 17652000000 7314600000 10337000000 2331 2117;2521 2432;2433;2434 12058;12059;12060;12061;12062;12063;12064;12065;12066;12067;12068;12069;12070;12071;12072;12073;12074;12075;12076;12077;12078;12079;12080;12081;12082;12083;12084;12085;12086;12087;12088;12089;12090;12091;12092;12093;12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106;12107;12108;12109;12110;12111;12112;12113;12114;12115;12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126;12127;12128;12129;12130;12131;12132;12133;12134;12135;12136;12137;12138 12324;12325;12326;12327;12328;12329;12330;12331;12332;12333;12334;12335;12336;12337;12338;12339;12340;12341;12342;12343;12344;12345;12346;12347;12348;12349;12350;12351;12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364;12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414;12415;12416;12417;12418;12419;12420;12421;12422;12423;12424;12425;12426;12427;12428;12429;12430;12431;12432;12433;12434;12435 12374 886;887 112 AMGNLQIDFADPSR VVYSNTIQSIMAIVKAMGNLQIDFADPSRA KAMGNLQIDFADPSRADDARQLFALSCTAE K A M S R A 2 1 1 2 0 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 0 0 14 0 1533.7246 P04899 P04899 87 100 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 0.00024272 76.143 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 0.93875 0.89218 9.1103 7 Median 1.0386 1.0289 NaN 1 0 Median 1.042 0.88909 13.891 2 0 Median 0.81362 0.8375 1.0943 2 0 Median 1.0965 0.93818 NaN 1 0 Median 0.85151 0.89218 NaN 1 0 Median NaN NaN NaN 0 0 Median 20252000 10431000 9821400 5708600 2547400 3161200 3159300 1570000 1589300 6419700 3525500 2894200 434030 195170 238850 4530500 2592700 1937800 0 0 0 2332 1855 2435 12139;12140;12141;12142;12143;12144;12145 12436;12437;12438;12439;12440;12441;12442 12436 7 AMGPLVLTEVLFNEK SDKEIVAEAERLDVKAMGPLVLTEVLFNEK AMGPLVLTEVLFNEKIREQIKKYRRHFLRF K A M E K I 1 0 1 0 0 0 2 1 0 0 3 1 1 1 1 0 1 0 0 2 0 0 15 0 1659.8906 P55010 P55010 274 288 EIF5 Eukaryotic translation initiation factor 5 yes yes 2 0.0018004 38.634 By matching By matching By MS/MS 1 1 1 1.2035 1.2393 14.101 3 Plateau NaN NaN NaN 0 0 Median 1.1403 0.99758 NaN 1 0 Median 1.2035 1.2393 NaN 1 0 Median 1.1008 0.95121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4361500 1959800 2401700 0 0 0 1045700 490090 555640 2289200 1012100 1277100 1026600 457630 568920 0 0 0 0 0 0 2333 2489 2436 12146;12147;12148 12443;12444 12444 2 AMGQGLPDEEQEK SPCWASPQLLRIIFKAMGQGLPDEEQEKLL FKAMGQGLPDEEQEKLLRICSIYTQSGENS K A M E K L 1 0 0 1 0 2 3 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 13 0 1430.6348 Q9Y4W2 Q9Y4W2 487 499 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 4.1866E-05 90.108 By matching By MS/MS By matching By MS/MS 1 1 1 2 0.80906 0.81643 31.329 5 Median NaN NaN NaN 0 0 Median 0.80906 0.73026 NaN 1 0 Median 0.91643 1.0101 NaN 1 0 Median 1.8228 1.5842 NaN 1 0 Median 0.77905 0.80164 2.5858 2 2 Median NaN NaN NaN 0 0 Median 19958000 9921300 10037000 0 0 0 659530 330510 329020 5353100 2605200 2747900 1279000 413420 865560 12666000 6572200 6094300 0 0 0 2334 4448 2437 12149;12150;12151;12152;12153 12445;12446;12447;12448 12445 4 AMGTLLNTAISEVIGK GIVWQDVLPVNIYCKAMGTLLNTAISEVIG MGTLLNTAISEVIGKITALEDISTEDGDRL K A M G K I 2 0 1 0 0 0 1 2 0 2 2 1 1 0 0 1 2 0 0 1 0 0 16 0 1616.8807 O43264 O43264 652 667 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 4.0391E-05 80.979 By matching By MS/MS By matching 1 1 1 1.145 1.0522 12.173 3 Plateau 1.0333 1.0084 NaN 1 0 Median 1.2271 1.0776 NaN 1 0 Median 0.8068 0.851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6314100 2962900 3351200 2731500 1401500 1330000 3379900 1464000 1915900 202710 97381 105330 0 0 0 0 0 0 0 0 0 2335 1562 2438 12154;12155;12156 12449;12450 12450 2 AMGVVVATGVNTEIGK KKNMLFSGTNIAAGKAMGVVVATGVNTEIG MGVVVATGVNTEIGKIRDEMVATEQERTPL K A M G K I 2 0 1 0 0 0 1 3 0 1 0 1 1 0 0 0 2 0 0 4 0 0 16 0 1544.8232 P16615;H7C5W9 P16615 219 234 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 3.8479E-06 75.819 By MS/MS By MS/MS 3 2 1.3351 1.2254 19.633 5 Median 1.1903 1.1816 27.75 3 1 Median 1.3936 1.2363 1.2494 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12864000 5590800 7273400 7184000 3196000 3988000 5680200 2394800 3285400 0 0 0 0 0 0 0 0 0 0 0 0 2336 2031 2439 12157;12158;12159;12160;12161 12451;12452;12453 12451 3 AMHTPKPAVGEEKDINTFLGTPVQK EEFLAFRKQTPSAGKAMHTPKPAVGEEKDI EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ K A M Q K L 2 0 1 1 0 1 2 2 1 1 1 3 1 1 3 0 3 0 0 2 0 0 25 2 2707.4003 P46013 P46013 1781 1805 MKI67 Antigen KI-67 yes yes 4 1.2673E-12 54.235 By MS/MS 1 0.65539 0.81371 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65539 0.81371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15514000 9843000 5671500 0 0 0 0 0 0 15514000 9843000 5671500 0 0 0 0 0 0 0 0 0 2337 2335 2440 12162 12454 12454 1 AMIENFNAK RRLGLAQKLMDQASRAMIENFNAKYVSLHV MDQASRAMIENFNAKYVSLHVRKSNRAALH R A M A K Y 2 0 2 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1036.5012 P41227;C9JN83;F8W808;A8MWP7;Q9BSU3;C9JW55 P41227 97 105 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 2 0.00064644 107.32 By MS/MS By MS/MS By MS/MS 1 2 1 1.2822 1.0835 9.5448 4 Median 1.4263 1.2947 NaN 1 0 Median 1.2822 1.0835 1.3043 2 0 Median NaN NaN NaN 0 0 Median 1.2501 1.0511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37912000 15197000 22715000 27230000 10673000 16557000 5720800 2268400 3452400 0 0 0 4961000 2255400 2705600 0 0 0 0 0 0 2338 2298 2441 12163;12164;12165;12166 12455;12456;12457;12458;12459 12458 5 AMIGHTDSAEAAPGTIR VAMVWEGYNVVRASRAMIGHTDSAEAAPGT IGHTDSAEAAPGTIRGDFSVHISRNVIHAS R A M I R G 4 1 0 1 0 0 1 2 1 2 0 0 1 0 1 1 2 0 0 0 0 0 17 0 1696.8203 Q4TT34;F2Z2X0;O00746;H0Y6J0;A0A087WVT9 Q4TT34 130 146 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 4.0716E-07 90.614 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 0.61312 0.60019 35.646 8 Median 0.59682 0.57053 11.523 3 0 Median 1.3392 1.1103 NaN 1 0 Median 0.51914 0.52582 3.5179 2 0 Median 1.277 1.059 7.9243 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81533000 47051000 34481000 39845000 24859000 14986000 8371200 3114500 5256700 24918000 15776000 9142100 8398700 3301600 5097100 0 0 0 0 0 0 2339 992 2442;2443 12167;12168;12169;12170;12171;12172;12173;12174 12460;12461;12462;12463;12464;12465;12466;12467;12468;12469;12470 12462 347 11 AMINLHIQK YLAYKRFYVKDHRNKAMINLHIQKDNPKIV KDHRNKAMINLHIQKDNPKIVHAFDMEDLG K A M Q K D 1 0 1 0 0 1 0 0 1 2 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1066.5957 Q9NZ45 Q9NZ45 43 51 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 2 0.00068909 104.45 By MS/MS By MS/MS By MS/MS 2 2 1 1.0172 0.93849 30.447 5 Median 0.95867 0.87712 9.5637 2 0 Median 1.852 1.5213 3.0246 2 0 Median 0.89248 0.88356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95053000 35954000 59099000 20872000 10621000 10251000 71801000 24032000 47768000 2380800 1300800 1080000 0 0 0 0 0 0 0 0 0 2340 4184 2444;2445 12175;12176;12177;12178;12179 12471;12472;12473;12474;12475;12476 12475 1895 6 AMINLHIQKDNPK YLAYKRFYVKDHRNKAMINLHIQKDNPKIV NKAMINLHIQKDNPKIVHAFDMEDLGDKAV K A M P K I 1 0 2 1 0 1 0 0 1 2 1 2 1 0 1 0 0 0 0 0 0 0 13 1 1520.8133 Q9NZ45 Q9NZ45 43 55 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 2;3 1.7544E-05 87.498 By MS/MS By MS/MS 2 1 0.74067 0.69362 48.425 3 Median 0.7359 0.68914 0.91476 2 0 Median 1.8389 1.5942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17660000 8298600 9361300 10478000 6005300 4472700 7181900 2293300 4888600 0 0 0 0 0 0 0 0 0 0 0 0 2341 4184 2446 12180;12181;12182 12477;12478;12479;12480 12480 4 AMKEYEEEER FKERVRGRAKLRIEKAMKEYEEEERKKRLG LRIEKAMKEYEEEERKKRLGPGGLDPVEVY K A M E R K 1 1 0 0 0 0 5 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 10 1 1312.5605 Q16543;K7EKQ2;K7EQA9;K7EL68;K7EIU0 Q16543 274 283 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2;3 0.00059556 62.303 By MS/MS By MS/MS 3 2 1.0779 1.1106 10.643 5 Median 1.0779 1.1106 5.376 3 0 Median 1.1238 1.0253 18.514 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5845300 2817800 3027500 4386900 2094200 2292800 1458400 723620 734740 0 0 0 0 0 0 0 0 0 0 0 0 2342 2988 2447 12183;12184;12185;12186;12187 12481;12482 12481 2 AMLAQQYQEGTLSVEK LWELLFSEAISSEQRAMLAQQYQEGTLSVE MLAQQYQEGTLSVEKLAAKLSATLEQAAAT R A M E K L 2 0 0 0 0 3 2 1 0 0 2 1 1 0 0 1 1 0 1 1 0 0 16 0 1794.8822 P58107;A0A075B730 P58107 525 540 EPPK1 Epiplakin yes no 2 9.0341E-20 186.02 By MS/MS By MS/MS By matching 4 1 1 1.2816 1.1847 8.3694 6 Median 1.2816 1.2568 9.0467 4 0 Median 1.2915 1.1407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0778 1.1344 NaN 1 0 Median NaN NaN NaN 0 0 Median 88435000 37188000 51247000 74864000 31395000 43469000 10276000 4293100 5983200 0 0 0 0 0 0 3294800 1500200 1794600 0 0 0 2343 2520 2448;2449 12188;12189;12190;12191;12192;12193 12483;12484;12485;12486;12487;12488;12489;12490 12486 1196 8 AMLDQLMGTSR ______________________________ AQMRAMLDQLMGTSRDGDTTRQRIKFSDDR R A M S R D 1 1 0 1 0 1 0 1 0 0 2 0 2 0 0 1 1 0 0 0 0 0 11 0 1221.5846 Q9Y383;V9GZ75;F8WEU3 Q9Y383 9 19 LUC7L2;C7orf55-LUC7L2 Putative RNA-binding protein Luc7-like 2 yes no 2 0.00014501 105.52 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 3 5 2 2 1 1.0289 0.97677 19.974 17 Median 1.0307 0.98737 14.469 4 0 Median 1.0965 0.93171 43.155 3 0 Median 1.0086 0.98736 19.485 5 0 Median 1.2131 1.0561 1.2243 2 0 Median 0.89857 0.92866 1.118 2 0 Median 1.0017 0.88422 NaN 1 0 Median 85378000 40549000 44830000 24438000 11580000 12858000 5521600 2785600 2736000 43341000 20760000 22582000 3755300 1510300 2245000 8105200 3803800 4301300 216540 109340 107200 2344 4407 2450;2451 12194;12195;12196;12197;12198;12199;12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210 12491;12492;12493;12494;12495;12496;12497;12498;12499;12500;12501;12502 12492 1969;1970 12 AMLENEK KAQAREEKHQKQMERAMLENEKKKREMAEK KHQKQMERAMLENEKKKREMAEKEKEKIER R A M E K K 1 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 7 0 833.3953 P26038 P26038 321 327 MSN Moesin yes yes 2 0.010865 81.297 By matching By MS/MS By MS/MS 1 1 1 1.1229 0.99788 8.7935 3 Plateau 0.98562 0.99788 NaN 1 0 Median 1.1562 0.99458 NaN 1 0 Median 1.0907 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6424400 3041500 3382900 388910 187430 201480 3054500 1539100 1515300 2981000 1314900 1666100 0 0 0 0 0 0 0 0 0 2345 2139 2452 12211;12212;12213 12503;12504;12505;12506 12503 4 AMLESIGVPLEK ELLELRVSYYENVIKAMLESIGVPLEKLKF VIKAMLESIGVPLEKLKFIKGTDYQLSKEY K A M E K L 1 0 0 0 0 0 2 1 0 1 2 1 1 0 1 1 0 0 0 1 0 0 12 0 1285.6952 P54577;A0A0C4DGZ5 P54577 103 114 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00015936 87.298 By MS/MS By MS/MS 1 1 0.92378 0.88613 14.737 2 Median 0.85388 0.79844 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9994 0.98346 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26454000 13219000 13235000 18301000 9506100 8795100 0 0 0 8152300 3712500 4439900 0 0 0 0 0 0 0 0 0 2346 2482 2453 12214;12215 12507;12508;12509 12508 3 AMLEVHK NNMEELIKDGSSKQKAMLEVHKTLFGNLLS KDGSSKQKAMLEVHKTLFGNLLSSSVSALD K A M H K T 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 7 0 826.43711 P52732 P52732 558 564 KIF11 Kinesin-like protein KIF11 yes yes 2 0.026776 52.683 By matching By MS/MS 1 1 1.0458 0.96497 15.318 2 Median 1.081 1.0754 NaN 1 0 Median 1.0118 0.86591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1252300 617700 634640 125880 65990 59885 1126500 551710 574760 0 0 0 0 0 0 0 0 0 0 0 0 2347 2454 2454 12216;12217 12510;12511 12510 2 AMLIEAGSPFR TLVKPLLEVVMKTERAMLIEAGSPFREPLI KTERAMLIEAGSPFREPLIKFLTRHPSQTV R A M F R E 2 1 0 0 0 0 1 1 0 1 1 0 1 1 1 1 0 0 0 0 0 0 11 0 1190.6118 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1526 1536 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00016096 90.629 By MS/MS 1 0.76802 0.84082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76802 0.84082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3194400 1666100 1528300 0 0 0 0 0 0 3194400 1666100 1528300 0 0 0 0 0 0 0 0 0 2348 991 2455 12218 12512 12512 1 AMLIEAGSPFREPLIK TLVKPLLEVVMKTERAMLIEAGSPFREPLI MLIEAGSPFREPLIKFLTRHPSQTVELFMM R A M I K F 2 1 0 0 0 0 2 1 0 2 2 1 1 1 2 1 0 0 0 0 0 0 16 1 1770.9702 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1526 1541 TRRAP Transformation/transcription domain-associated protein yes no 2;3 0.00050453 69.979 By matching By MS/MS By matching 1 2 1 0.66762 0.71798 28.179 4 Median 0.45569 0.46226 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66762 0.7726 20.288 2 0 Median 0.82683 0.77016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13788000 8180300 5607800 1134300 718450 415860 0 0 0 12521000 7389400 5131700 132830 72524 60309 0 0 0 0 0 0 2349 991 2456 12219;12220;12221;12222 12513;12514;12515 12515 3 AMLLQGTESLNR YAVENEHMNRLQSQRAMLLQGTESLNRATQ SQRAMLLQGTESLNRATQSIERSHRIATET R A M N R A 1 1 1 0 0 1 1 1 0 0 3 0 1 0 0 1 1 0 0 0 0 0 12 0 1331.6867 Q9UEU0;H0YJL5;H0YJJ5 Q9UEU0 130 141 VTI1B Vesicle transport through interaction with t-SNAREs homolog 1B yes no 2 0.00038449 96.143 By MS/MS By MS/MS 1 2 0.92078 0.77849 42.238 3 Median 0.42992 0.40803 NaN 1 1 Median 0.9917 0.83844 10.493 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23072000 14001000 9070700 14843000 10163000 4680600 8228500 3838500 4390100 0 0 0 0 0 0 0 0 0 0 0 0 2350 4256 2457 12223;12224;12225 12516;12517;12518 12516 3 AMLPPNSFQGK NTEALQSKFFSPLQKAMLPPNSFQGKVAFI PLQKAMLPPNSFQGKVAFITGGGTGLGKGM K A M G K V 1 0 1 0 0 1 0 1 0 0 1 1 1 1 2 1 0 0 0 0 0 0 11 0 1188.5961 Q16698;E5RJG7;E5RFV2;E5RID6 Q16698 50 60 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.00058491 66.692 By MS/MS By matching By MS/MS 1 1 1 0.86424 0.73237 41.426 3 Median 0.45239 0.41737 NaN 1 0 Median 0.86424 0.73237 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1118 0.93645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16181000 9553200 6627700 11759000 7502700 4256300 1110000 548440 561570 0 0 0 3311900 1502100 1809800 0 0 0 0 0 0 2351 2994 2458 12226;12227;12228 12519;12520;12521;12522 12520 4 AMLSANIR YFGSLSVEDSLECLRAMLSANIRQNLQICV DSLECLRAMLSANIRQNLQICVQVASKYHE R A M I R Q 2 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 874.46947 A0A087WVQ6;Q00610 A0A087WVQ6 673 680 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00082632 97.602 By MS/MS By matching By matching 4 1 1 1.7686 1.6735 22.51 6 Median NaN NaN NaN 0 0 Median 1.8525 1.5099 27.709 4 2 Median 1.6031 1.7502 NaN 1 0 Median 1.9038 1.6757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99950000 37034000 62916000 0 0 0 93310000 34633000 58677000 1995000 803980 1191000 4644800 1596800 3048000 0 0 0 0 0 0 2352 44 2459 12229;12230;12231;12232;12233;12234 12523;12524;12525 12524 3 AMLSGPGQFAENETNEVNFR FIVKREHALTSGTIKAMLSGPGQFAENETN PGQFAENETNEVNFREIPSHVLSKVCMYFT K A M F R E 2 1 3 0 0 1 3 2 0 0 1 0 1 2 1 1 1 0 0 1 0 0 20 0 2210.0062 Q15369;E5RHG8 Q15369 44 63 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2;3 3.6824E-18 140.1 By matching By MS/MS 2 3 0.9222 0.92959 2.7025 4 Median NaN NaN NaN 0 0 Median 1.1073 0.93379 NaN 1 0 Median 0.91199 0.9254 3.1738 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18710000 9592800 9117400 0 0 0 336030 132050 203980 18374000 9460800 8913400 0 0 0 0 0 0 0 0 0 2353 846 2460;2461 12235;12236;12237;12238;12239 12526;12527;12528;12529;12530 12527 305 5 AMLSTGFK EVAGFGESRCEAYLKAMLSTGFKIPKKNIL RCEAYLKAMLSTGFKIPKKNILLTIGSYKN K A M F K I 1 0 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 8 0 853.43677 F8VPD4;P27708;P31327 F8VPD4 1239 1246 CAD;CPS1 CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase;Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.022427 65.252 By MS/MS 1 1.2267 1.0881 NaN 1 Median NaN NaN NaN 0 0 Median 1.2267 1.0881 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4622200 2080400 2541800 0 0 0 4622200 2080400 2541800 0 0 0 0 0 0 0 0 0 0 0 0 2354 1057 2462 12240 12531 12531 1 AMLTPKPAGGDEKDIK EEFLALRKLTPSAGKAMLTPKPAGGDEKDI MLTPKPAGGDEKDIKAFMGTPVQKLDLAGT K A M I K A 2 0 0 2 0 0 1 2 0 1 1 3 1 0 2 0 1 0 0 0 0 0 16 2 1669.8709 P46013 P46013 1173 1188 MKI67 Antigen KI-67 yes yes 3;4 0.0016696 32.815 By MS/MS By matching 4 1 0.8305 1.0311 24.488 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77426 0.96129 17.764 4 0 Median 1.1755 1.4163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18922000 10562000 8360400 0 0 0 0 0 0 18620000 10436000 8184300 302420 126420 176010 0 0 0 0 0 0 2355 2335 2463 12241;12242;12243;12244;12245 12532;12533;12534;12535 12533 4 AMLVFAEHR CNNTGFMWDVAEELKAMLVFAEHRYYGESL VAEELKAMLVFAEHRYYGESLPFGDNSFKD K A M H R Y 2 1 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1072.5488 P42785;E9PQB5;E9PL85;E9PQN3;E9PKN6;E9PIG4;E9PL49;E9PLY4;E9PNF7;E9PNJ1;E9PR42 P42785 115 123 PRCP Lysosomal Pro-X carboxypeptidase yes no 2 0.0012806 83.265 By MS/MS 1 1.8214 1.7532 NaN 1 Median 1.8214 1.7532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6741100 2024200 4716900 6741100 2024200 4716900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2356 2318 2464 12246 12536 12536 1 AMLWLSEK PTPFDRNYGTKLGVKAMLWLSEKLREVYRK GTKLGVKAMLWLSEKLREVYRKGRVFANAP K A M E K L 1 0 0 0 0 0 1 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 8 0 976.50519 P17858 P17858 682 689 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.07003 46.426 By MS/MS 1 1.1166 1.0931 NaN 1 Median 1.1166 1.0931 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470100 1139600 1330500 2470100 1139600 1330500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2357 2047 2465 12247 12537 12537 1 AMMSQSGHEYDPINYMK ANLAEANASEEDKIKAMMSQSGHEYDPINY MSQSGHEYDPINYMKKPLGPPPPSYTCFRC K A M M K K 1 0 1 1 0 1 1 1 1 1 0 1 3 0 1 2 0 0 2 0 0 0 17 0 2000.8431 Q7Z6E9;A0A2R8Y880;H3BUN0;I3L3Y2 Q7Z6E9 133 149 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 0.0015137 29.341 By MS/MS 1 0.89026 0.99203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89026 0.99203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4127500 2377900 1749600 0 0 0 0 0 0 4127500 2377900 1749600 0 0 0 0 0 0 0 0 0 2358 3251 2466 12248 12538 12538 1 AMMYSGELK HSCQDIGAKSLTQVRAMMYSGELKFEKRTS SLTQVRAMMYSGELKFEKRTSSAQVEGGVH R A M L K F 1 0 0 0 0 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 0 0 9 0 1028.4671 P12268;H0Y4R1 P12268 481 489 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0070414 52.716 By MS/MS 1 1.208 1.0248 NaN 1 Median NaN NaN NaN 0 0 Median 1.208 1.0248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8578000 3782900 4795200 0 0 0 8578000 3782900 4795200 0 0 0 0 0 0 0 0 0 0 0 0 2359 1148 2467 12249 12539;12540 12539 2 AMMYSGELKFEK HSCQDIGAKSLTQVRAMMYSGELKFEKRTS QVRAMMYSGELKFEKRTSSAQVEGGVHSLH R A M E K R 1 0 0 0 0 0 2 1 0 0 1 2 2 1 0 1 0 0 1 0 0 0 12 1 1432.6731 P12268;H0Y4R1 P12268 481 492 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 0.0070667 31.881 By MS/MS By matching 1 1 1.0706 1.1146 25.749 2 Median 1.3984 1.3372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81954 0.92905 NaN 1 0 Median NaN NaN NaN 0 0 Median 16544000 7737400 8806300 9804500 4338500 5466100 0 0 0 0 0 0 0 0 0 6739200 3398900 3340200 0 0 0 2360 1148 2468 12250;12251 12541 12541 1 AMNGESLDGR FITFTNPEHASVAMRAMNGESLDGRQIRVD SVAMRAMNGESLDGRQIRVDHAGKSARGTR R A M G R Q 1 1 1 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 0 0 0 10 0 1048.4608 P98179 P98179 66 75 RBM3 RNA-binding protein 3 yes yes 2 0.0011606 67.993 By MS/MS By MS/MS By matching 1 1 1 1.3147 1.2594 10.864 3 Median NaN NaN NaN 0 0 Median 1.5144 1.2594 NaN 1 1 Median 1.3147 1.3341 NaN 1 0 Median 1.3116 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7256500 3076100 4180400 0 0 0 1154500 514510 639950 5408800 2265000 3143800 693270 296580 396690 0 0 0 0 0 0 2361 2672 2469 12252;12253;12254 12542;12543;12544 12543 3 AMNIVVPFMFK RARVAISLGFLGGAKAMNIVVPFMFKYAVD GGAKAMNIVVPFMFKYAVDSLNQMSGNMLN K A M F K Y 1 0 1 0 0 0 0 0 0 1 0 1 2 2 1 0 0 0 0 2 0 0 11 0 1295.677 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;E9PJR8 O75027 152 162 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 0.077861 24.155 By MS/MS By matching 1 1 0.89375 0.91282 7.9887 2 Median 0.91344 0.86269 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87449 0.96587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031500 1631300 1400200 2133400 1168300 965160 0 0 0 898110 463060 435050 0 0 0 0 0 0 0 0 0 2362 1642 2470 12255;12256 12545;12546 12545 2 AMNVLTEAEER LQEMKEKLGRNVNMRAMNVLTEAEERYNDL VNMRAMNVLTEAEERYNDLMKKKRIVENDK R A M E R Y 2 1 1 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1261.5973 O95347;A0A0C4DGE5 O95347 987 997 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.00011206 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.0302 0.92919 26.398 7 Median 0.9854 0.94954 NaN 1 0 Median 1.0302 0.86661 NaN 1 0 Median 0.94116 1.0344 22.626 2 1 Median 0.95621 0.8104 19.345 2 0 Median NaN NaN NaN 0 0 Median 1.9568 1.5927 NaN 1 0 Median 61836000 30168000 31668000 10548000 5241600 5306400 6224200 3014200 3210000 22157000 10599000 11558000 21734000 10829000 10906000 0 0 0 1171400 484250 687130 2363 1766 2471;2472 12257;12258;12259;12260;12261;12262;12263 12547;12548;12549;12550;12551;12552;12553;12554;12555;12556;12557 12548 566 11 AMPLQPSILR LQPEEKCCVVGTLFKAMPLQPSILREVSEE GTLFKAMPLQPSILREVSEEHNLLPQPPRS K A M L R E 1 1 0 0 0 1 0 0 0 1 2 0 1 0 2 1 0 0 0 0 0 0 10 0 1124.6376 F8W8R3;A0A087WWF6;P49005;C9IZD2;C9J8Z7;C9JLE1 F8W8R3 100 109 POLD2 DNA polymerase delta subunit 2 yes no 2 0.0005372 92.439 By MS/MS By matching By matching By matching 1 1 1 1 0.99169 0.89655 22.474 4 Median 0.67175 0.64857 NaN 1 0 Median 1.1249 0.99024 NaN 1 0 Median 1.0576 1.0726 NaN 1 0 Median 0.92985 0.81173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13725000 8236000 5488700 8041100 4982400 3058700 550050 264240 285820 4480500 2696000 1784500 653000 293270 359740 0 0 0 0 0 0 2364 58 2473 12264;12265;12266;12267 12558 12558 1 AMPVTKPITVTK VTKPVTVSRPMPVTKAMPVTKPITVTKSVP VTKAMPVTKPITVTKSVPVTKPVPVTKPIT K A M T K S 1 0 0 0 0 0 0 0 0 1 0 2 1 0 2 0 3 0 0 2 0 0 12 1 1284.7475 Q96KM6 Q96KM6 251 262 ZNF512B Zinc finger protein 512B yes yes 3 0.053107 27.526 By MS/MS 1 0.6541 0.74845 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6541 0.74845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1846600 1075400 771160 0 0 0 0 0 0 1846600 1075400 771160 0 0 0 0 0 0 0 0 0 2365 3694 2474 12268 12559 12559 1 AMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTR VPPPGFEHITPMQYKAMQAAGQIPATALLP VTPTPVPVVGSQMTRQARRLYVGNIPFGIT K A M T R Q 6 1 0 1 0 3 0 3 0 1 3 0 3 0 6 1 6 0 0 4 0 0 38 0 3787.9675 P26368;K7ELP8 P26368 109 146 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3 0.049546 12.147 By MS/MS 1 0.36855 0.39385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36855 0.39385 NaN 1 1 Median NaN NaN NaN 0 0 Median 1288300 1068400 219890 0 0 0 0 0 0 0 0 0 0 0 0 1288300 1068400 219890 0 0 0 2366 2143 2475 12269 12560 12560 1 AMQADISQAAQILSSDPSR ASALQIATHTAFVAKAMQADISQAAQILSS DISQAAQILSSDPSRTHQALGILSKTYDAA K A M S R T 4 1 0 2 0 3 0 0 0 2 1 0 1 0 1 4 0 0 0 0 0 0 19 0 1987.9633 P42166 P42166 592 610 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 8.545E-25 175.15 By MS/MS By MS/MS By MS/MS By matching 5 4 2 1 0.96486 0.84872 17.816 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82506 0.83628 24.513 5 0 Median 1.0113 0.84245 11.026 4 0 Median 0.84555 0.89964 26.556 2 0 Median 1.085 0.9133 NaN 1 0 Median 78267000 41916000 36351000 0 0 0 0 0 0 72564000 38884000 33681000 1674500 853140 821340 3797400 2066700 1730700 231140 112900 118240 2367 2306 2476;2477 12270;12271;12272;12273;12274;12275;12276;12277;12278;12279;12280;12281 12561;12562;12563;12564;12565;12566;12567;12568;12569;12570;12571;12572;12573 12567 1052 13 AMQDAEVSK IVTDLIRRTIAPCQKAMQDAEVSKSDIGEV IAPCQKAMQDAEVSKSDIGEVILVGGMTRM K A M S K S 2 0 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 9 0 977.4488 P38646;H0YBG6 P38646 369 377 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0074886 51.346 By matching By MS/MS By matching 1 1 1 1.5511 1.3009 21.314 3 Median 1.2091 1.1717 NaN 1 0 Median 1.5511 1.3009 NaN 1 0 Median 1.6507 1.7659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10898000 4212300 6685300 999220 456980 542250 9014700 3418300 5596400 883630 336970 546660 0 0 0 0 0 0 0 0 0 2368 2277 2478 12282;12283;12284 12574;12575;12576;12577 12574 4 AMQDAEVSKSDIGEVILVGGMTR IVTDLIRRTIAPCQKAMQDAEVSKSDIGEV KSDIGEVILVGGMTRMPKVQQTVQDLFGRA K A M T R M 2 1 0 2 0 1 2 3 0 2 1 1 2 0 0 2 1 0 0 3 0 0 23 1 2405.193 P38646;H0YBG6 P38646 369 391 HSPA9 Stress-70 protein, mitochondrial yes no 3 1.2881E-11 54.235 By MS/MS By matching By matching 2 1 1 0.81424 0.84852 40.315 4 Median 1.0503 1.0621 2.1024 2 1 Median 0.49676 0.45897 NaN 1 0 Median 0.64588 0.68808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14098000 6630500 7467800 12476000 5740800 6735500 892260 388750 503510 729620 500910 228710 0 0 0 0 0 0 0 0 0 2369 2277 2479 12285;12286;12287;12288 12578;12579;12580 12580 3 AMQEQLENYDFTK QREYQISAGDFPEVKAMQEQLENYDFTKFH VKAMQEQLENYDFTKFHSLKPKLIEAVDNM K A M T K F 1 0 1 1 0 2 2 0 0 0 1 1 1 1 0 0 1 0 1 0 0 0 13 0 1615.7188 Q9H223 Q9H223 361 373 EHD4 EH domain-containing protein 4 yes yes 2 1.3713E-06 115.18 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0066 0.91975 43.09 4 Median 1.0959 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0237 0.99444 NaN 1 0 Median 0.98973 0.85066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48131 0.41187 NaN 1 0 Median 21027000 10054000 10972000 7627800 3460000 4167800 0 0 0 12205000 5989000 6215500 945760 458390 487370 0 0 0 248810 147010 101800 2370 3939 2480 12289;12290;12291;12292 12581;12582;12583 12583 3 AMQGLTGR GKIFVEFTSVFDCQKAMQGLTGRKFANRVV SVFDCQKAMQGLTGRKFANRVVVTKYCDPD K A M G R K 1 1 0 0 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 0 8 0 832.42252 P26368;K7ENG2 P26368 445 452 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0035505 89.369 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1.2543 1.0815 20.944 9 Median NaN NaN NaN 0 0 Median 1.4367 1.2517 NaN 1 0 Median 0.9132 0.92452 27.703 2 0 Median 1.2139 1.0073 10.046 2 1 Median 0.94365 0.95322 42.871 2 0 Median 1.3327 1.0889 3.2886 2 0 Median 12376000 5648100 6728300 0 0 0 1162000 494220 667810 6035500 2810500 3225000 1665900 759160 906740 2329500 1138500 1191000 1183500 445780 737760 2371 2143 2481 12293;12294;12295;12296;12297;12298;12299;12300;12301 12584;12585;12586;12587;12588;12589 12585 6 AMQHAEVYYK SYGNDPDIEMAWAMRAMQHAEVYYKLISSV AWAMRAMQHAEVYYKLISSVDPQFLKLTKV R A M Y K L 2 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 2 1 0 0 10 0 1238.5754 Q9BVG4;A6NDF3 Q9BVG4 43 52 PBDC1 Protein PBDC1 yes no 2;3 0.00036109 82.749 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.3004 1.1803 18.69 5 Median 1.231 1.1803 NaN 1 0 Median 1.1193 0.94133 20.918 2 0 Median 1.3245 1.2792 NaN 1 0 Median 1.5047 1.2682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14951000 6467200 8484000 4742000 2009300 2732600 5642500 2563900 3078600 1675700 663230 1012400 2891100 1230700 1660400 0 0 0 0 0 0 2372 3852 2482 12302;12303;12304;12305;12306 12590;12591;12592;12593;12594 12592 5 AMQNFLNLPEVER EDPRTASQSLLVNLRAMQNFLNLPEVERDR LRAMQNFLNLPEVERDRIYQDERERSMNPN R A M E R D 1 1 2 0 0 1 2 0 0 0 2 0 1 1 1 0 0 0 0 1 0 0 13 0 1559.7766 C9JR56;Q9UPW6 C9JR56 358 370 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 yes no 2 0.0014995 52.79 By MS/MS 1 0.84298 0.90284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84298 0.90284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2506500 1360600 1145900 0 0 0 0 0 0 2506500 1360600 1145900 0 0 0 0 0 0 0 0 0 2373 719 2483 12307 12595 12595 1 AMQRPETAATLK ______________________________ ILKAMQRPETAATLKRTIEALMDRGAIVRD K A M L K R 3 1 0 0 0 1 1 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 12 1 1315.6918 P82932 P82932 12 23 MRPS6 28S ribosomal protein S6, mitochondrial yes yes 3 0.019898 24.696 By MS/MS By matching By matching 1 1 1 0.95773 0.80016 21.76 3 Median 0.816 0.80016 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0966 1.15 NaN 1 0 Median 0.95773 0.77884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3319900 1809000 1510900 2305200 1320400 984830 0 0 0 675340 359120 316220 339400 129520 209890 0 0 0 0 0 0 2374 2658 2484 12308;12309;12310 12596 12596 1 AMQRPETAATLKR ______________________________ LKAMQRPETAATLKRTIEALMDRGAIVRDL K A M K R T 3 2 0 0 0 1 1 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 13 2 1471.7929 P82932 P82932 12 24 MRPS6 28S ribosomal protein S6, mitochondrial yes yes 3 1.9016E-07 106.17 By matching By MS/MS By matching 1 1 1 0.99794 1.0766 8.9829 3 Plateau 0.89059 1.0052 NaN 1 0 Median 1.1182 1.1532 NaN 1 0 Median 0.83368 0.97389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7606200 3781800 3824400 3472200 1818800 1653300 3562500 1669900 1892600 571530 293100 278430 0 0 0 0 0 0 0 0 0 2375 2658 2485 12311;12312;12313 12597 12597 1 AMQTVYLR DTRKLWRNIEPHLKKAMQTVYLREISSSQW IEPHLKKAMQTVYLREISSSQWEKLQKDDT K A M L R E 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 8 0 980.51134 O43913 O43913 264 271 ORC5 Origin recognition complex subunit 5 yes yes 2 0.0034866 93.262 By matching By MS/MS 1 1 1.1577 1.0705 9.4797 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1556 1.1448 NaN 1 0 Median 1.1598 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15785000 7116600 8668200 0 0 0 0 0 0 8264800 3870700 4394100 7520100 3246000 4274100 0 0 0 0 0 0 2376 1599 2486 12314;12315 12598 12598 1 AMSLNTLNVDAPR RLRGEAAAGAAGMKRAMSLNTLNVDAPRAP KRAMSLNTLNVDAPRAPGTQFPSWHLDKAP R A M P R A 2 1 2 1 0 0 0 0 0 0 2 0 1 0 1 1 1 0 0 1 0 0 13 0 1400.7082 Q6P597 Q6P597 464 476 KLC3 Kinesin light chain 3 yes yes 2 7.3272E-05 85.958 By MS/MS 1 0.90638 0.89807 NaN 1 Median 0.90638 0.89807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3203900 1655200 1548700 3203900 1655200 1548700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2377 3161 2487 12316 12599 12599 1 AMSLVSNEGDSEQNEIR QMIVEKNLDWFPRMRAMSLVSNEGDSEQNE SLVSNEGDSEQNEIRSLQEKLESTMSLVKQ R A M I R S 1 1 2 1 0 1 3 1 0 1 1 0 1 0 0 3 0 0 0 1 0 0 17 0 1877.8425 Q14571 Q14571 2631 2647 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 2 6.5268E-12 129.84 By MS/MS By matching By matching 1 1 1 0.70403 0.78029 15.962 3 Median 0.64705 0.64712 NaN 1 0 Median 1.0518 0.88898 NaN 1 0 Median 0.70403 0.78029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12258000 6553000 5704600 5434200 3344700 2089500 4407600 2026500 2381100 2415900 1181800 1234100 0 0 0 0 0 0 0 0 0 2378 2882 2488 12317;12318;12319 12600 12600 1 AMSLVSNEGEGEQNEIR QMIKNKNLDWFPRMRAMSLVSNEGEGEQNE SLVSNEGEGEQNEIRILQDKLNSTMKLVSH R A M I R I 1 1 2 0 0 1 4 2 0 1 1 0 1 0 0 2 0 0 0 1 0 0 17 0 1861.8476 Q14573 Q14573 2607 2623 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 6.5268E-12 129.84 By MS/MS By matching 2 1 1.0813 1.0444 11.928 3 Median 0.99714 0.97328 9.971 2 0 Median 1.3761 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18452000 8868000 9584400 12342000 6337800 6004200 6110400 2530300 3580200 0 0 0 0 0 0 0 0 0 0 0 0 2379 2883 2489 12320;12321;12322 12601;12602 12602 2 AMSRPILYSNWLSK DTVALKHFPNIDREKAMSRPILYSNWLSKD KAMSRPILYSNWLSKDYIPVDQEELRDYVK K A M S K D 1 1 1 0 0 0 0 0 0 1 2 1 1 0 1 3 0 1 1 0 0 0 14 1 1664.8708 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2866 2879 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.00028614 56.514 By MS/MS By matching By MS/MS By matching 2 2 4 2 0.93962 1.002 13.345 10 Median 0.8458 0.88388 10.762 2 0 Median 0.90362 0.86206 10.006 2 0 Median 0.92166 1.0843 9.4734 4 1 Median 1.1328 1.0552 6.2915 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128180000 66557000 61622000 51958000 27442000 24516000 4221400 1991100 2230300 71030000 36688000 34342000 969440 435260 534180 0 0 0 0 0 0 2380 2865 2490;2491 12323;12324;12325;12326;12327;12328;12329;12330;12331;12332 12603;12604;12605;12606;12607;12608;12609 12608 1545 7 AMSTTSISSPQPGK ESAVHPREIFKQKERAMSTTSISSPQPGKL RAMSTTSISSPQPGKLRSPFLQKQLTQPET R A M G K L 1 0 0 0 0 1 0 1 0 1 0 1 1 0 2 4 2 0 0 0 0 0 14 0 1390.6762 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 267 280 DBNL Drebrin-like protein yes no 2 0.00078971 60.434 By MS/MS By MS/MS 1 1 0.80091 0.72793 11.246 2 Median 0.81977 0.78817 NaN 1 1 Median 0.78247 0.67228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4658700 2867500 1791200 2591100 1531300 1059800 2067600 1336100 731420 0 0 0 0 0 0 0 0 0 0 0 0 2381 4298 2492 12333;12334 12610;12611;12612 12612 3 AMTGVEQWPYR ASEMAVAHALTEKSKAMTGVEQWPYRAVAQ EKSKAMTGVEQWPYRAVAQALEVIPRTLIQ K A M Y R A 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1 0 1 1 1 1 0 0 11 0 1336.6234 P49368;B4DUR8 P49368 428 438 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00011468 144.09 By MS/MS By MS/MS 1 2 1.0275 0.96538 10.935 3 Plateau 1.0275 0.96538 NaN 1 0 Median 1.0119 0.86574 12.651 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57637000 27528000 30109000 45819000 21989000 23831000 11818000 5539100 6278600 0 0 0 0 0 0 0 0 0 0 0 0 2382 2379 2493 12335;12336;12337 12613;12614;12615;12616;12617 12614 5 AMTILLEEAK EAGSKKVAKQDAAMKAMTILLEEAKAKDSG DAAMKAMTILLEEAKAKDSGKSEESSHYST K A M A K A 2 0 0 0 0 0 2 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1117.6053 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 565 574 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.00033827 96.948 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 3 1 4 1 1.2045 1.0975 48.811 11 Median 1.3941 1.4031 NaN 1 0 Median 0.62519 0.52543 95.567 2 0 Median 0.96288 1.0493 29.058 3 0 Median 1.4855 1.2513 NaN 1 0 Median 1.0829 1.0975 30.71 3 0 Median 1.3977 1.1507 NaN 1 0 Median 98782000 50036000 48746000 1536000 621530 914440 10182000 7569400 2612900 22673000 11460000 11213000 643250 226000 417250 60753000 29058000 31695000 2994800 1101000 1893800 2383 2498 2494;2495 12338;12339;12340;12341;12342;12343;12344;12345;12346;12347;12348;12349 12618;12619;12620;12621;12622;12623;12624;12625;12626 12625 1185 9 AMTKDNNLLGR DNQPGVLIQVYEGERAMTKDNNLLGRFELS EGERAMTKDNNLLGRFELSGIPPAPRGVPQ R A M G R F 1 1 2 1 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1231.6343 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;Q53FA3;P34931 A0A0G2JIW1 449 459 HSPA1B;HSPA1A;HSPA6;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like no no 2;3 0.00026194 78.334 By MS/MS By matching 2 1 1.4453 1.4516 17.695 3 Median 1.5323 1.5397 8.3361 2 0 Median 1.2562 1.1533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12504000 5417700 7086600 10325000 4501400 5823800 2179100 916330 1262800 0 0 0 0 0 0 0 0 0 0 0 0 2384 278;2229;2035 2496 12350;12351;12352 12627;12628;12629 12628 3 AMTLQEAEAFVGAER QVNKLIHARGTNLNKAMTLQEAEAFVGAER AMTLQEAEAFVGAERCTMKTLTETDLYCEP K A M E R C 4 1 0 0 0 1 3 1 0 0 1 0 1 1 0 0 1 0 0 1 0 0 15 0 1621.777 O15031;H0Y6J7 O15031 1122 1136 PLXNB2 Plexin-B2 yes no 2 2.4251E-09 115.18 By MS/MS By matching 1 1 0.87368 0.87141 11.461 2 Median 0.98305 0.94497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77647 0.80358 NaN 1 0 Median NaN NaN NaN 0 0 Median 5336400 2612500 2723800 4438600 2158100 2280400 0 0 0 0 0 0 0 0 0 897800 454390 443410 0 0 0 2385 1514 2497 12353;12354 12630;12631 12630 2 AMTMLTIEQLSYLLK CEKITVAECIETQSKAMTMLTIEQLSYLLK AMTMLTIEQLSYLLKFAIQKMKQPGTDAFQ K A M L K F 1 0 0 0 0 1 1 0 0 1 4 1 2 0 0 1 2 0 1 0 0 0 15 0 1753.9358 Q9ULU4 Q9ULU4 145 159 ZMYND8 Protein kinase C-binding protein 1 no no 2 0.061132 21.993 By MS/MS 1 1.086 1.1615 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.086 1.1615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 579010 282760 296250 0 0 0 0 0 0 579010 282760 296250 0 0 0 0 0 0 0 0 0 2386 4328 2498 12355 12632 12632 1 AMVASGSELGK ENFCVCHLATGDMLRAMVASGSELGKKLKA DMLRAMVASGSELGKKLKATMDAGKLVSDE R A M G K K 2 0 0 0 0 0 1 2 0 0 1 1 1 0 0 2 0 0 0 1 0 0 11 0 1048.5223 F8W1A4;P54819;F8VZG5;G3V213 F8W1A4 52 62 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 0.00052123 67.993 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.253 1.2079 28.33 4 Median 1.3965 1.2984 NaN 1 0 Median 2.0341 1.7217 NaN 1 0 Median 1.1241 1.1237 NaN 1 0 Median 0.99209 0.87365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21067000 8782900 12284000 17891000 7647300 10244000 2441600 784830 1656800 494520 224310 270210 239920 126440 113470 0 0 0 0 0 0 2387 1081 2499 12356;12357;12358;12359 12633;12634 12634 2 AMVASGSELGKK ENFCVCHLATGDMLRAMVASGSELGKKLKA MLRAMVASGSELGKKLKATMDAGKLVSDEM R A M K K L 2 0 0 0 0 0 1 2 0 0 1 2 1 0 0 2 0 0 0 1 0 0 12 1 1176.6173 F8W1A4;P54819;F8VZG5;G3V213 F8W1A4 52 63 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 0.0017419 55.549 By MS/MS By MS/MS By MS/MS 1 1 1 1.1029 1.1195 15.322 3 Median 1.0785 1.0983 NaN 1 0 Median 1.5767 1.4451 NaN 1 0 Median 1.1029 1.1195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5594400 2589400 3005000 2855800 1338400 1517400 1223500 488390 735140 1515100 762590 752500 0 0 0 0 0 0 0 0 0 2388 1081 2500 12360;12361;12362 12635;12636;12637;12638;12639;12640 12636 6 AMVEEMQGHLKR GDRAVRLFHNTPGHRAMVEEMQGHLKRASN GHRAMVEEMQGHLKRASNESTRQRLQQQLT R A M K R A 1 1 0 0 0 1 2 1 1 0 1 1 2 0 0 0 0 0 0 1 0 0 12 1 1427.7013 E9PF19;Q9Y4P3;Q96E41 E9PF19 371 382 TBL2 Transducin beta-like protein 2 yes no 3 0.0063871 29.807 By MS/MS 1 1.0332 1.046 NaN 1 Median 1.0332 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1674000 951210 722830 1674000 951210 722830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2389 917 2501 12363 12641 12641 1 AMVEFATLDR ______________________________ ______________________________ K A M D R Q 2 1 0 1 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 10 0 1151.5645 E5RFJ1;Q96MF7;H0YB96;E5RIM1;A0A087WTZ8;E5RHW9 E5RFJ1 4 13 NSMCE2 E3 SUMO-protein ligase NSE2 yes no 2 0.0028032 58.981 By MS/MS 1 0.80164 0.78641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80164 0.78641 NaN 1 0 Median NaN NaN NaN 0 0 Median 1802700 897470 905190 0 0 0 0 0 0 0 0 0 0 0 0 1802700 897470 905190 0 0 0 2390 834 2502 12364 12642 12642 1 AMVEYEIDLQK QDLIKMIFDVESMKKAMVEYEIDLQKMPLG SMKKAMVEYEIDLQKMPLGKLSKRQIQAAY K A M Q K M 1 0 0 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1337.6537 P09874 P09874 685 695 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00011253 125.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 5 5 2 3 1.0168 1.0718 21.646 16 Median 0.952 0.92104 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99739 1.0719 4.1472 5 0 Median 1.2751 1.1606 4.1653 5 0 Median 0.88914 0.91192 11.503 2 0 Median 1.1808 0.96728 41.749 3 0 Median 506060000 239850000 266210000 11827000 5869100 5957400 0 0 0 350520000 171270000 179240000 115290000 49290000 66000000 18697000 8819800 9877200 9729300 4602200 5127000 2391 1922 2503;2504 12365;12366;12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377;12378;12379;12380 12643;12644;12645;12646;12647;12648;12649;12650;12651;12652;12653;12654;12655;12656;12657;12658;12659;12660;12661;12662;12663;12664;12665;12666;12667;12668;12669 12651 697 27 AMVLDLR ALVHERDEAAYGELRAMVLDLRAFYAELYH EAAYGELRAMVLDLRAFYAELYHIISSNLE R A M L R A 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 7 0 816.45276 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 219 225 PSME2 Proteasome activator complex subunit 2 yes no 2 0.018479 62.714 By MS/MS By matching 1 1 1.2675 1.135 18.913 2 Median 1.0625 0.99293 NaN 1 0 Median 1.512 1.2974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9785900 4733300 5052600 9252800 4525500 4727300 533100 207800 325300 0 0 0 0 0 0 0 0 0 0 0 0 2392 125 2505 12381;12382 12670 12670 1 AMVQQLDTLR DFRRTVGPYGETFNKAMVQQLDTLRQKLGP ETFNKAMVQQLDTLRQKLGPLAGDVEDHLS K A M L R Q 1 1 0 1 0 2 0 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 10 0 1173.6176 CON__Q32PJ2 CON__Q32PJ2 317 326 yes yes 2 0.00098927 101.64 By MS/MS 2 0.6112 0.61746 100.85 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6112 0.61746 100.85 2 2 Median NaN NaN NaN 0 0 Median 12109000 8058000 4051200 0 0 0 0 0 0 0 0 0 0 0 0 12109000 8058000 4051200 0 0 0 + 2393 775 2506 12383;12384 12671;12672 12671 2 AMVQQLLQK KEDGEALLILLPSEKAMVQQLLQKKVPVKE LLPSEKAMVQQLLQKKVPVKEIKINPEKLI K A M Q K K 1 0 0 0 0 3 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1057.5954 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 425 433 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.015919 43.124 By MS/MS By matching 1 1 1.2759 1.1856 9.9903 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2305 1.2724 NaN 1 0 Median 1.3231 1.1048 NaN 1 0 Median 5178400 2340200 2838100 0 0 0 0 0 0 0 0 0 0 0 0 4616000 2128800 2487200 562390 211450 350930 2394 427 2507 12385;12386 12673 12673 1 AMVSEFLK ______________________________ ______________________________ M A M L K Q 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 8 0 923.47864 P04083;Q5T3N0 P04083 2 9 ANXA1 Annexin A1;Annexin yes no 1;2 0.0010797 91.626 By MS/MS By matching By MS/MS By matching By matching 9 6 2 1 1 1.4196 1.3352 19.03 19 Median 1.4491 1.3435 13.132 9 0 Median 1.1997 1.0238 4.2892 6 0 Median 1.4424 1.3787 1.5213 2 0 Median 1.2802 1.0823 NaN 1 0 Median 1.8435 1.8306 NaN 1 0 Median NaN NaN NaN 0 0 Median 142560000 58453000 84109000 103320000 41156000 62167000 30901000 14088000 16813000 5562700 2166000 3396600 2263400 883900 1379500 511920 159330 352590 0 0 0 2395 1844 2508;2509 12387;12388;12389;12390;12391;12392;12393;12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404;12405 12674;12675;12676 12676 603 3 AMVSNAQLDNEK EMKDSLAEVEEKYKKAMVSNAQLDNEKTNF YKKAMVSNAQLDNEKTNFMYQVDTLKDMLL K A M E K T 2 0 2 1 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1318.6187 Q32MZ4;C9JSU1 Q32MZ4 174 185 LRRFIP1;LRRFIP2 Leucine-rich repeat flightless-interacting protein 1 no no 2 0.00081714 60.518 By MS/MS 1 0.85364 0.73152 NaN 1 Median NaN NaN NaN 0 0 Median 0.85364 0.73152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4558700 2157700 2401000 0 0 0 4558700 2157700 2401000 0 0 0 0 0 0 0 0 0 0 0 0 2396 3006 2510 12406 12677;12678 12677 2 AMYLPDTLSPADQLK HLHQEIPTSLLILSRAMYLPDTLSPADQLK AMYLPDTLSPADQLKSTLQTLPEIVAKEAQ R A M L K S 2 0 0 2 0 1 0 0 0 0 3 1 1 0 2 1 1 0 1 0 0 0 15 0 1661.8335 O95202 O95202 420 434 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 7.4307E-05 82.171 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.83697 0.87594 17.668 5 Median 0.79701 0.7155 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83697 0.87594 NaN 1 1 Median 1.2127 1.0541 NaN 1 0 Median 0.74018 0.78424 NaN 1 0 Median 1.2594 1.0654 NaN 1 0 Median 26019000 13145000 12874000 17443000 9348700 8093900 0 0 0 5747100 2478400 3268800 618990 270610 348390 2039200 971510 1067700 170580 75720 94857 2397 1754 2511 12407;12408;12409;12410;12411 12679;12680 12679 2 AMYPDYFAK KVPEWCLDDWHPSEKAMYPDYFAKREQWKK WHPSEKAMYPDYFAKREQWKKLRRESWERE K A M A K R 2 0 0 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 2 0 0 0 9 0 1104.495 A0A3B3IT57;E9PH64;E7EWZ0;E9PF49;Q9Y6M9 A0A3B3IT57 113 121 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes no 2 0.011758 46.994 By MS/MS By matching By matching 1 1 1 0.80699 0.75491 42.566 3 Median 0.80699 0.75211 NaN 1 0 Median 1.8411 1.575 NaN 1 0 Median 0.79363 0.75491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13195000 7552300 5642900 9071300 5480700 3590600 554960 255050 299900 3569000 1816600 1752400 0 0 0 0 0 0 0 0 0 2398 433 2512 12412;12413;12414 12681 12681 1 AMYPGTFYFQFK ______________________________ PMKAMYPGTFYFQFKNLWEANDRNETWLCF K A M F K N 1 0 0 0 0 1 0 1 0 0 0 1 1 3 1 0 1 0 2 0 0 0 12 0 1498.6955 Q9NRW3 Q9NRW3 11 22 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 2 0.029201 28.727 By matching By MS/MS 1 2 0.90905 1.0123 13.312 3 Median 0.85168 0.82408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94064 1.0346 3.075 2 0 Median NaN NaN NaN 0 0 Median 2987300 1517400 1469900 1396300 729020 667320 0 0 0 0 0 0 0 0 0 1591000 788400 802610 0 0 0 2399 4090 2513 12415;12416;12417 12682 12682 1 AMYQYRPQNEDELELR TSSPNTSQIHWTPYRAMYQYRPQNEDELEL MYQYRPQNEDELELREGDRVDVMQQCDDGW R A M L R E 1 2 1 1 0 2 3 0 0 0 2 0 1 0 1 0 0 0 2 0 0 0 16 1 2053.9527 O60504;H0YAZ3 O60504 619 634 SORBS3 Vinexin yes no 3 4.0895E-05 65.374 By matching By matching By MS/MS By matching 1 1 1 1 1.3956 1.2654 44.421 4 Median 1.7203 1.6761 NaN 1 0 Median 1.3232 1.2357 NaN 1 0 Median 0.58122 0.59571 NaN 1 0 Median 1.4719 1.2957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26689000 16473000 10215000 3541000 2310700 1230200 430110 190280 239830 21929000 13638000 8291100 788270 334110 454160 0 0 0 0 0 0 2400 1618 2514 12418;12419;12420;12421 12683 12683 1 ANALHATNNLQIIPDFSLK AYNHPDVVSVILEQKANALHATNNLQIIPD HATNNLQIIPDFSLKDSRDQTVLGLALWTG K A N L K D 3 0 3 1 0 1 0 0 1 2 3 1 0 1 1 1 1 0 0 0 0 0 19 0 2079.1113 Q9P2R3;I3L1Z9 Q9P2R3 567 585 ANKFY1 Rabankyrin-5 yes no 3 0.024294 14.614 By matching By MS/MS 1 1 1.247 1.1637 10.389 2 Median 1.2623 1.2524 NaN 1 0 Median 1.232 1.0813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4099900 1814000 2285900 1839600 767650 1072000 2260300 1046400 1213900 0 0 0 0 0 0 0 0 0 0 0 0 2401 4229 2515 12422;12423 12684;12685 12685 2 ANDDIIVNWVNR RYTLNVLEDLGDGQKANDDIIVNWVNRTLS GQKANDDIIVNWVNRTLSEAGKSTSIQSFK K A N N R T 1 1 3 2 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 2 0 0 12 0 1427.7157 P13797;A0A0A0MSQ0 P13797 519 530 PLS3 Plastin-3 yes no 2 1.0568E-14 185.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 1.2189 1.0592 42.506 9 Median 1.0679 0.99993 2.8996 2 0 Median 1.2291 1.0592 13.183 3 0 Plateau 1.2189 1.2369 NaN 1 0 Median 1.3195 1.1025 NaN 1 0 Median 2.5259 2.6186 12.452 2 0 Median NaN NaN NaN 0 0 Median 313900000 136740000 177170000 174890000 79431000 95458000 117450000 48747000 68700000 15919000 6795100 9123700 2323700 928660 1395000 3325000 833460 2491600 0 0 0 2402 1995 2516 12424;12425;12426;12427;12428;12429;12430;12431;12432 12686;12687;12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698 12687 13 ANDDVAQEIAER KTDLSNVQELLQFVKANDDVAQEIAERGSQ FVKANDDVAQEIAERGSQFIRNHLQMDDIT K A N E R G 3 1 1 2 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1329.6161 Q8NBL1 Q8NBL1 330 341 POGLUT1 Protein O-glucosyltransferase 1 yes yes 2 5.2749E-24 145.46 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2403 3405 2517 12433;12434 12699;12700 12700 2 ANDTTFGLAAGVFTR MSILSFDTEAEVLERANDTTFGLAAGVFTR ANDTTFGLAAGVFTRDIQRAHRVVAELQAG R A N T R D 3 1 1 1 0 0 0 2 0 0 1 0 0 2 0 0 3 0 0 1 0 0 15 0 1539.7682 P49189 P49189 412 426 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 2.4566E-09 101.6 By MS/MS By MS/MS 1 1 1.2648 1.1482 17.005 2 Median 1.0518 1.0181 NaN 1 0 Median 1.521 1.2949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11313000 5266700 6045900 7427700 3673200 3754500 3884800 1593400 2291400 0 0 0 0 0 0 0 0 0 0 0 0 2404 2372 2518 12435;12436 12701;12702;12703;12704 12702 4 ANDYANAVLQALSNVPPLR GTTYLPGIVGLNNIKANDYANAVLQALSNV ANAVLQALSNVPPLRNYFLEEDNYKNIKRP K A N L R N 4 1 3 1 0 1 0 0 0 0 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2025.0643 B9A018;Q53GS9;A0A087X1B2 B9A018 232 250 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2;3 0.0084122 22.653 By matching By matching By MS/MS By matching By matching 1 1 3 2 1 0.71378 0.7304 18.233 7 Median 0.89333 0.90344 NaN 1 0 Median 0.57743 0.51467 NaN 1 0 Median 0.6921 0.7304 4.4542 3 0 Median 0.89715 0.77276 14.671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8941500 5078200 3863300 778340 401140 377200 363460 199030 164430 7307300 4198600 3108700 445950 250270 195680 46457 29137 17320 0 0 0 2405 654 2519 12437;12438;12439;12440;12441;12442;12443;12444 12705;12706;12707 12705 3 ANEFLEVGK ______________________________ ENALKRANEFLEVGKKQPALDVLYDVMKSK R A N G K K 1 0 1 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1005.5131 Q14152 Q14152 15 23 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.001536 80.438 By MS/MS By MS/MS 1 2 1.1538 1.0164 4.7127 2 Median NaN NaN NaN 0 0 Median 1.1538 1.0164 4.7127 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13834000 6073900 7760000 0 0 0 13834000 6073900 7760000 0 0 0 0 0 0 0 0 0 0 0 0 2406 2860 2520 12445;12446;12447 12708;12709;12710;12711 12709 4 ANEFLEVGKK ______________________________ NALKRANEFLEVGKKQPALDVLYDVMKSKK R A N K K Q 1 0 1 0 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1133.6081 Q14152 Q14152 15 24 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.002078 65.305 By MS/MS By MS/MS By matching 2 1 1 1.0485 1.0209 21.656 4 Median 0.99784 0.97984 5.7756 2 2 Median 1.0571 1.0212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4459 1.5214 NaN 1 0 Median NaN NaN NaN 0 0 Median 15996000 7101600 8894100 11358000 5062900 6295400 3537700 1612600 1925100 0 0 0 0 0 0 1099700 426100 673580 0 0 0 2407 2860 2521 12448;12449;12450;12451 12712;12713;12714;12715 12714 4 ANEHQGIGFLNDPR FQGREKDFIILSCVRANEHQGIGFLNDPRR RANEHQGIGFLNDPRRLNVALTRARYGVII R A N P R R 1 1 2 1 0 1 1 2 1 1 1 0 0 1 1 0 0 0 0 0 0 0 14 0 1566.7539 Q92900 Q92900 855 868 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 3.295E-05 81.619 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.81776 0.89285 31.227 7 Median 1.0083 0.97466 9.7993 2 2 Median 0.63875 0.55798 29.42 2 0 Median 0.84892 0.95246 9.14 2 1 Median 0.69474 0.58926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32534000 17525000 15008000 10517000 5819700 4697000 7182000 3879100 3302900 7414100 3833800 3580300 7421100 3992800 3428300 0 0 0 0 0 0 2408 3564 2522 12452;12453;12454;12455;12456;12457;12458 12716;12717;12718;12719;12720;12721;12722 12721 7 ANELFYLSHK SCLPVHIGTLVELNKANELFYLSHKLVDLY VELNKANELFYLSHKLVDLYPSNPVSWFAV K A N H K L 1 0 1 0 0 0 1 0 1 0 2 1 0 1 0 1 0 0 1 0 0 0 10 0 1220.619 Q13042;Q5T8C6;A0A3B3ISD2 Q13042 281 290 CDC16 Cell division cycle protein 16 homolog yes no 2;3 0.0023766 75.378 By MS/MS By MS/MS 2 3 1.1335 0.98211 29.648 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3396 1.3683 46.894 2 1 Median 1.1335 0.97409 5.55 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23824000 8874400 14950000 0 0 0 0 0 0 20334000 7438100 12896000 3490000 1436300 2053700 0 0 0 0 0 0 2409 2779 2523 12459;12460;12461;12462;12463 12723;12724;12725;12726;12727 12725 5 ANELLQVIDSSMK GIEEAITAVGSFILKANELLQVIDSSMKNF LKANELLQVIDSSMKNFKAFFRWLYVAMLR K A N M K N 1 0 1 1 0 1 1 0 0 1 2 1 1 0 0 2 0 0 0 1 0 0 13 0 1446.7388 Q9UJX5 Q9UJX5 400 412 ANAPC4 Anaphase-promoting complex subunit 4 yes yes 2 0.0014995 52.79 By MS/MS By matching 1 1 1.4955 1.4345 21.743 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1857 1.2301 NaN 1 0 Median 1.8862 1.6729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1078400 466350 612090 0 0 0 0 0 0 831210 393420 437790 247230 72929 174300 0 0 0 0 0 0 2410 4302 2524 12464;12465 12728 12728 1 ANELPQPPVPEPANAGK TIEDDDYSPPSKRPKANELPQPPVPEPANA ELPQPPVPEPANAGKRKVREFNFEKWNARI K A N G K R 3 0 2 0 0 1 2 1 0 0 1 1 0 0 5 0 0 0 0 1 0 0 17 0 1727.8842 P78347;A0A494C1K3 P78347 327 343 GTF2I General transcription factor II-I yes no 2 4.7247E-18 119.39 By MS/MS By MS/MS 2 1 0.30923 0.32961 19.229 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28519 0.30877 9.239 2 2 Median 0.49785 0.42235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29574000 22786000 6788300 0 0 0 0 0 0 27568000 21486000 6082000 2006100 1299800 706300 0 0 0 0 0 0 2411 2642 2525 12466;12467;12468 12729;12730;12731;12732;12733 12729 5 ANELPQPPVPEPANAGKR TIEDDDYSPPSKRPKANELPQPPVPEPANA LPQPPVPEPANAGKRKVREFNFEKWNARIT K A N K R K 3 1 2 0 0 1 2 1 0 0 1 1 0 0 5 0 0 0 0 1 0 0 18 1 1883.9854 P78347;A0A494C1K3 P78347 327 344 GTF2I General transcription factor II-I yes no 3 1.2584E-06 67.902 By MS/MS 1 0.31682 0.35924 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31682 0.35924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17821000 12547000 5273200 0 0 0 0 0 0 17821000 12547000 5273200 0 0 0 0 0 0 0 0 0 2412 2642 2526 12469 12734;12735 12735 2 ANELQLR YDAMPRVPDVQDGVRANELQLRWQEYRELV PDVQDGVRANELQLRWQEYRELVLLLLQWM R A N L R W 1 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 842.46102 Q15149;H0YDN1;E9PMV1 Q15149 411 417 PLEC Plectin yes no 2 0.0061063 94.407 By MS/MS 1 0.89083 0.75645 NaN 1 Median NaN NaN NaN 0 0 Median 0.89083 0.75645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3690000 1960800 1729200 0 0 0 3690000 1960800 1729200 0 0 0 0 0 0 0 0 0 0 0 0 2413 2933 2527 12470 12736 12736 1 ANENSNIQVLSER IGQTITISRVEGRRRANENSNIQVLSERSA RRANENSNIQVLSERSATEVDNNFSKPPPF R A N E R S 1 1 3 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1472.7219 Q6UN15 Q6UN15 332 344 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 1.8361E-05 147.62 By matching By matching By MS/MS By MS/MS 1 2 1 1 1.2344 1.0521 101.09 5 Median 9.5497 9.0805 NaN 1 0 Median 1.1818 1.0341 57.165 2 0 Median 1.0506 1.0521 NaN 1 0 Median 1.2344 1.035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87507000 38467000 49040000 11430000 1351600 10078000 5625200 2786400 2838700 64473000 31771000 32702000 5978700 2558000 3420700 0 0 0 0 0 0 2414 3185 2528 12471;12472;12473;12474;12475 12737;12738 12738 2 ANERLELLLQK QRQYEAERNKMIGKRANERLELLLQKRKEL IGKRANERLELLLQKRKELQENQDEIENMM R A N Q K R 1 1 1 0 0 1 2 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 11 1 1325.7667 Q8N3U4;B1AMT4 Q8N3U4 260 270 STAG2 Cohesin subunit SA-2 no no 3 0.0014187 47.971 By MS/MS By matching 1 1 0.95978 1.0878 27.872 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78827 0.89326 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1686 1.3248 NaN 1 0 Median NaN NaN NaN 0 0 Median 11686000 6140000 5545900 0 0 0 0 0 0 9062100 5140000 3922100 0 0 0 2623800 1000000 1623800 0 0 0 2415 3369 2529 12476;12477 12739 12739 1 ANEVEQMIR ELQKLEDDAKDNQQKANEVEQMIRDLEASI KDNQQKANEVEQMIRDLEASIARYKEEYAV K A N I R D 1 1 1 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1088.5284 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3430 3438 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 2.2216E-07 166.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 1 1.0737 1.011 21.414 9 Median 1.0419 1.0132 NaN 1 0 Median 1.0737 0.85802 33.788 3 2 Median 0.97236 1.0169 NaN 1 0 Median 1.1594 1.011 13.699 3 1 Median NaN NaN NaN 0 0 Median 1.2062 1.0036 NaN 1 0 Median 114360000 55145000 59212000 21721000 11429000 10292000 41978000 19208000 22770000 34760000 17355000 17406000 13592000 6332800 7259200 0 0 0 2306100 821010 1485100 2416 2865 2530;2531 12478;12479;12480;12481;12482;12483;12484;12485;12486 12740;12741;12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752 12740 1546 13 ANFDKESER LAATNALLNSLEFTKANFDKESERHFIMQV SLEFTKANFDKESERHFIMQVVCEATQCPD K A N E R H 1 1 1 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 9 1 1094.4993 Q14974;J3KTM9 Q14974 207 215 KPNB1 Importin subunit beta-1 yes no 2 0.049075 48.283 By matching By MS/MS By matching By matching 1 1 1 1 1.0798 1.1126 8.7858 4 Median 0.99657 1.0115 NaN 1 0 Median 1.17 1.176 NaN 1 0 Median 0.91836 1.0526 NaN 1 0 Median 1.2472 1.2162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1330300 622110 708180 344530 173450 171080 447690 192100 255590 376260 191660 184600 161820 64899 96916 0 0 0 0 0 0 2417 2904 2532 12487;12488;12489;12490 12753 12753 1 ANFSLPEK VEGDDVPESIMLEMKANFSLPEKCDYMDEV SIMLEMKANFSLPEKCDYMDEVTYGELEKE K A N E K C 1 0 1 0 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 8 0 904.46543 Q1KMD3;H3BQZ7 Q1KMD3 594 601 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.044714 35.872 By MS/MS By matching 1 1 0.78581 0.72798 10.129 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75919 0.78204 NaN 1 0 Median 0.81336 0.67767 NaN 1 0 Median 6741100 3424200 3316800 0 0 0 0 0 0 0 0 0 0 0 0 5913500 3025200 2888300 827550 399020 428530 2418 3002 2533 12491;12492 12754 12754 1 ANFWYQPSFHGVDLSALR APFTDEQLYMEQFTKANFWYQPSFHGVDLS WYQPSFHGVDLSALRGAAVDEYFRQPVVDT K A N L R G 2 1 1 1 0 1 0 1 1 0 2 0 0 2 1 2 0 1 1 1 0 0 18 0 2107.0276 Q86X55;K7EQA8 Q86X55 310 327 CARM1 Histone-arginine methyltransferase CARM1 yes no 3 2.4656E-06 56.215 By MS/MS By MS/MS 3 1 0.8477 0.82875 5.8111 4 Median 0.85546 0.81459 4.6282 3 0 Plateau 1.0204 0.88308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19570000 10114000 9456400 17489000 9121400 8367900 2080600 992190 1088400 0 0 0 0 0 0 0 0 0 0 0 0 2419 3299 2534 12493;12494;12495;12496 12755;12756;12757;12758;12759;12760;12761;12762 12756 8 ANGHLLLNSEK AMWPEQSDKWPTAVRANGHLLLNSEKMSKS TAVRANGHLLLNSEKMSKSTGNFLTLTQAI R A N E K M 1 0 2 0 0 0 1 1 1 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1194.6357 Q9P2J5 Q9P2J5 706 716 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00041722 101.38 By MS/MS 1 1.0391 0.8921 NaN 1 Median NaN NaN NaN 0 0 Median 1.0391 0.8921 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4283500 2060300 2223200 0 0 0 4283500 2060300 2223200 0 0 0 0 0 0 0 0 0 0 0 0 2420 4224 2535 12497 12763 12763 1 ANGMGVIGQDGLLFK KDMEPEMVCIDSCGRANGMGVIGQDGLLFK ANGMGVIGQDGLLFKVTLGLIRKLLAPDCE R A N F K V 1 0 1 1 0 1 0 4 0 1 2 1 1 1 0 0 0 0 0 1 0 0 15 0 1518.7864 Q9NQT5 Q9NQT5 187 201 EXOSC3 Exosome complex component RRP40 yes yes 2 0.0097251 30.872 By matching By matching By MS/MS By matching 2 1 1 1 0.94535 0.91297 8.412 5 Median 0.88388 0.84328 2.8899 2 0 Median 1.1305 0.95851 NaN 1 0 Median 0.94535 0.91297 NaN 1 0 Median 1.2032 1.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9248600 4595000 4653500 6552200 3352200 3199900 787180 328980 458200 1677700 814800 862880 231560 99010 132540 0 0 0 0 0 0 2421 4067 2536 12498;12499;12500;12501;12502 12764 12764 1 ANGTTVHVGIHPSK RKKYVIYIERVQREKANGTTVHVGIHPSKV KANGTTVHVGIHPSKVVITRLKLDKDRKKI K A N S K V 1 0 1 0 0 0 0 2 2 1 0 1 0 0 1 1 2 0 0 2 0 0 14 0 1416.7474 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KS10 P61254 90 103 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2;3 9.986E-05 72.175 By matching By MS/MS By MS/MS By matching By matching By matching 3 4 1 1 1 1 1.0102 0.89504 9.7177 11 Median 1.0102 0.97931 7.545 3 0 Median 1.0076 0.86502 6.3912 4 0 Median 1.046 1.0061 NaN 1 0 Median 1.221 1.0067 NaN 1 0 Median 0.82314 0.97415 NaN 1 0 Median 0.95915 0.81541 NaN 1 0 Median 28866000 13649000 15217000 5271100 2666700 2604400 20262000 9405400 10857000 2097500 1014700 1082800 537300 229370 307930 565020 267590 297430 133060 65198 67858 2422 2554 2537 12503;12504;12505;12506;12507;12508;12509;12510;12511;12512;12513 12765;12766;12767;12768;12769;12770;12771;12772 12772 8 ANHEEVLAAGK LITNKVIMDYESLEKANHEEVLAAGKQAAQ SLEKANHEEVLAAGKQAAQKLEQFVSILMA K A N G K Q 3 0 1 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1137.5778 P00491 P00491 255 265 PNP Purine nucleoside phosphorylase yes yes 2 0.060675 25.559 By matching By MS/MS 1 1 1.1343 1.0387 2.7151 2 Median 1.0303 1.0189 NaN 1 0 Median 1.2488 1.0588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1781700 804750 976900 1002100 466420 535680 779550 338330 441220 0 0 0 0 0 0 0 0 0 0 0 0 2423 1821 2538 12514;12515 12773 12773 1 ANHFFTVTDPR NIKEPRWDQSTFIGRANHFFTVTDPRNILL FIGRANHFFTVTDPRNILLTNEQLESARKI R A N P R N 1 1 1 1 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 1 0 0 11 0 1303.6309 Q9H9B4;D6RFI0;D6RDG7;S4R2X2;D6RAE9 Q9H9B4 25 35 SFXN1 Sideroflexin-1 yes no 2;3 0.00015247 67.153 By MS/MS By MS/MS By matching 2 2 2 0.94909 0.95622 97.404 6 Median 0.5135 0.4797 93.059 2 1 Median 0.43079 0.35823 163.6 2 1 Median 0.95508 1.0331 6.4396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143440000 95067000 48370000 102350000 67446000 34902000 36503000 25410000 11093000 4584800 2210700 2374100 0 0 0 0 0 0 0 0 0 2424 3998 2539 12516;12517;12518;12519;12520;12521 12774;12775;12776;12777;12778 12775 5 ANIAVQR ______________________________ ______________________________ M A N Q R I 2 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 7 0 770.43989 P61086;D6RDM7;D6RFX1 P61086 2 8 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 2 0.0038265 102.98 By MS/MS 1 1.0672 1.0075 NaN 1 Median 1.0672 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5436000 2723900 2712100 5436000 2723900 2712100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2425 2543 2540 12522 12779 12779 1 ANILEDVSLDELK TLKKSLLQAWGLILRANILEDVSLDELKNF LRANILEDVSLDELKNFVHAQCLELKAKGL R A N L K N 1 0 1 2 0 0 2 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 13 0 1457.7613 Q9NU22 Q9NU22 2871 2883 MDN1 Midasin yes yes 2 0.00073014 66.595 By MS/MS By matching 1 1 0.97964 0.99026 2.3642 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92397 1.007 NaN 1 0 Median 1.0387 0.97385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2642800 1177300 1465400 0 0 0 0 0 0 2573800 1144500 1429200 68994 32783 36210 0 0 0 0 0 0 2426 4112 2541 12523;12524 12780 12780 1 ANILGLAAGQR RVEGITGKQMESFLKANILGLAAGQRCGAS SFLKANILGLAAGQRCGAS___________ K A N Q R C 3 1 1 0 0 1 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1082.6196 Q14807;H3BRB3 Q14807 651 661 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.031209 31.074 By matching By MS/MS By matching 2 1 1 1.1666 1.0345 23.249 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1268 1.1455 38.772 2 0 Median NaN NaN NaN 0 0 Median 0.99116 1.0071 NaN 1 0 Median 1.3732 1.0626 NaN 1 0 Median 13083000 6810600 6272100 0 0 0 0 0 0 11495000 6134100 5361100 0 0 0 1166700 510290 656430 420770 166180 254590 2427 1228 2542 12525;12526;12527;12528 12781 12781 1 ANINVENAFFTLAR LALDYGIKFMETSAKANINVENAFFTLARD KANINVENAFFTLARDIKAKMDKKLEGNSP K A N A R D 3 1 3 0 0 0 1 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 14 0 1578.8154 P61006 P61006 154 167 RAB8A Ras-related protein Rab-8A yes yes 2 1.1179E-05 89.548 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0706 0.99645 5.3471 4 Median 1.0525 0.99917 NaN 1 0 Median 1.0774 0.91954 NaN 1 0 Median 1.0639 0.99375 NaN 1 0 Median 1.2709 1.0461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17991000 8580900 9409900 15879000 7597100 8281500 801340 369040 432300 791400 394700 396690 519510 220100 299410 0 0 0 0 0 0 2428 2535 2543 12529;12530;12531;12532 12782;12783;12784;12785 12783 4 ANIPIMDTGENPEVPFPR EMDRKLRFVEKEIRKANIPIMDTGENPEVP PIMDTGENPEVPFPRDMIDLEANFEKIENE K A N P R D 1 1 2 1 0 0 2 1 0 2 0 0 1 1 4 0 1 0 0 1 0 0 18 0 1995.9724 Q93050;B7Z641;B7Z2A9;K7EM24;K7EN36;K7ELZ6 Q93050 75 92 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 1.7487E-12 131.13 By MS/MS By matching By MS/MS 2 2 1 0.79687 0.68068 41.436 5 Median 0.52095 0.51828 2.2818 2 1 Median 0.85553 0.7458 12.921 2 0 Median 1.2601 1.4108 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13041000 7914700 5126500 10156000 6521100 3634700 1213700 565660 648030 1671700 827900 843760 0 0 0 0 0 0 0 0 0 2429 3576 2544 12533;12534;12535;12536;12537 12786;12787;12788 12786 3 ANIQAVSLK LVRTRRYVRKFVLMRANIQAVSLKIQTLKS KFVLMRANIQAVSLKIQTLKSNNSMAQAMK R A N L K I 2 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 942.54983 O43633;M0R1L7;M0R1T5 O43633 81 89 CHMP2A Charged multivesicular body protein 2a yes no 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0057 0.96566 61.03 5 Median 0.84663 0.79012 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.03 0.96566 NaN 1 0 Median 1.2933 1.0715 NaN 1 0 Median 1.0057 1.0237 NaN 1 0 Median 0.26026 0.25053 NaN 1 0 Median 41482000 21050000 20432000 8142300 4488700 3653600 0 0 0 20406000 10459000 9947300 3479700 1581700 1898000 8569200 3857600 4711600 884400 662990 221410 2430 1579 2545 12538;12539;12540;12541;12542 12789;12790;12791;12792;12793 12790 5 ANIQYSHVLER KRASTAAAPLAAWVKANIQYSHVLERIHPL AWVKANIQYSHVLERIHPLETEQAGLESNL K A N E R I 1 1 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 1 0 0 11 0 1328.6837 Q8NCM8 Q8NCM8 3095 3105 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.00099228 49.423 By MS/MS By MS/MS 3 2 0.88461 0.81725 62.709 5 Median 0.53334 0.5011 36.237 3 0 Median 1.8872 1.5481 13.386 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69988000 40464000 29523000 57958000 34928000 23030000 12030000 5536300 6493400 0 0 0 0 0 0 0 0 0 0 0 0 2431 3418 2546 12543;12544;12545;12546;12547 12794;12795 12795 1 ANIVAYHDSIMNPDYNVEFFR KAQVAKESVLQFYPKANIVAYHDSIMNPDY HDSIMNPDYNVEFFRQFILVMNALDNRAAR K A N F R Q 2 1 3 2 0 0 1 0 1 2 0 0 1 2 1 1 0 0 2 2 0 0 21 0 2514.1638 Q9UBT2;K7EPL2 Q9UBT2 87 107 UBA2 SUMO-activating enzyme subunit 2 yes no 2;3 5.9597E-19 109.65 By MS/MS By MS/MS By matching 5 1 1 0.76461 0.73427 43.344 7 Median 0.76461 0.73427 9.4884 5 2 Median 0.86423 0.74914 NaN 1 0 Median 0.20528 0.23908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39084000 21311000 17774000 35698000 19385000 16313000 2747700 1405800 1341900 638140 519590 118550 0 0 0 0 0 0 0 0 0 2432 4247 2547;2548 12548;12549;12550;12551;12552;12553;12554 12796;12797;12798;12799;12800;12801;12802;12803;12804;12805 12799 1907 10 ANIVHLMLSSPEQIQK DEPNKICEADRVAIKANIVHLMLSSPEQIQ NIVHLMLSSPEQIQKQLSDAISIIGREDFP K A N Q K Q 1 0 1 0 0 2 1 0 1 2 2 1 1 0 1 2 0 0 0 1 0 0 16 0 1806.9662 P55060 P55060 94 109 CSE1L Exportin-2 yes yes 2;3 3.2026E-05 82.171 By MS/MS By matching By MS/MS 2 3 1 1.0127 0.95772 42.804 6 Median 0.9941 0.95772 0.81269 2 0 Median 1.0288 0.88008 14.012 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4854 2.5702 NaN 1 0 Median NaN NaN NaN 0 0 Median 58114000 27919000 30195000 49321000 24597000 24724000 5256300 2359500 2896800 0 0 0 0 0 0 3536900 962840 2574000 0 0 0 2433 2493 2549 12555;12556;12557;12558;12559;12560 12806;12807;12808;12809;12810 12809 5 ANKLDHVVTIIK IECSSISDYAVKIVKANKLDHVVTIIKGKV IVKANKLDHVVTIIKGKVEEVELPVEKVDI K A N I K G 1 0 1 1 0 0 0 0 1 2 1 2 0 0 0 0 1 0 0 2 0 0 12 1 1349.8031 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4 E9PKG1 86 97 PRMT1 Protein arginine N-methyltransferase 1 yes no 2;3 4.143E-05 147.28 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 1.1379 1.1134 20.818 12 Median 1.088 1.0834 14.695 4 0 Median 1.2243 1.1237 10.758 4 0 Median 1.0512 1.1455 1.5947 2 0 Median 0.87859 0.78235 38.487 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207670000 96484000 111180000 66440000 30776000 35665000 35932000 15829000 20103000 86283000 40978000 45305000 19013000 8902600 10111000 0 0 0 0 0 0 2434 947 2550 12561;12562;12563;12564;12565;12566;12567;12568;12569;12570;12571;12572 12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821;12822;12823;12824;12825;12826;12827 12826 17 ANKLESTVEIYR ALKDEIDVLRATSDKANKLESTVEIYRQKL SDKANKLESTVEIYRQKLQDLNDLRKQVKT K A N Y R Q 1 1 1 0 0 0 2 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 12 1 1421.7514 Q9UJC3 Q9UJC3 316 327 HOOK1 Protein Hook homolog 1 yes yes 3 0.020943 38.021 By MS/MS 1 0.2373 0.24377 NaN 1 Median 0.2373 0.24377 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12558000 10802000 1756000 12558000 10802000 1756000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2435 4295 2551 12573 12828 12828 1 ANLEESFPR ______________________________ ______________________________ M A N P R G 1 1 1 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1061.5142 Q14690;A0A3B3IUD7;S4R3Q4 Q14690 2 10 PDCD11 Protein RRP5 homolog yes no 2 0.0028794 69.423 By MS/MS By matching By matching By matching 2 1 1 1 0.99896 0.96357 7.0203 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91141 1.0038 6.5522 2 0 Median 1.1102 0.96357 NaN 1 0 Median 0.99896 1.0067 NaN 1 0 Median 1.0615 0.8707 NaN 1 0 Median 9034500 4654100 4380400 0 0 0 0 0 0 8218900 4272100 3946800 169740 69596 100140 435150 219120 216030 210700 93317 117390 2436 448 2552 12574;12575;12576;12577;12578 12829;12830;12831;12832 12830 4 ANLENPIR VVDDELATRFLKSFKANLENPIRLA_____ RFLKSFKANLENPIRLA_____________ K A N I R L 1 1 2 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 925.49813 H0YD97;O00330 H0YD97 180 187 PDHX Pyruvate dehydrogenase protein X component, mitochondrial yes no 2 0.061313 47.849 By MS/MS 1 1.2309 1.0665 NaN 1 Median NaN NaN NaN 0 0 Median 1.2309 1.0665 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1737000 775660 961360 0 0 0 1737000 775660 961360 0 0 0 0 0 0 0 0 0 0 0 0 2437 1174 2553 12579 12833 12833 1 ANLGVFSVFAPR LMPSNQQHKTDEKGRANLGVFSVFAPRGEH KGRANLGVFSVFAPRGEHTLQVKAIYNKSI R A N P R G 2 1 1 0 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 12 0 1276.6928 A6NHR9;J3KTL8 A6NHR9 1325 1336 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 6.4863E-05 123.88 By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 0.98271 0.93906 10.759 8 Median NaN NaN NaN 0 0 Median 1.1373 0.94671 NaN 1 0 Median 0.83529 0.90549 4.0024 2 0 Median 1.0172 0.90219 17.719 2 0 Median 0.94823 0.99862 18.43 2 0 Median 1.1716 0.96185 NaN 1 0 Median 22995000 11947000 11048000 0 0 0 1478000 613540 864430 17049000 9190400 7858500 1132800 521090 611740 3209500 1563500 1646000 125510 58566 66947 2438 518 2554 12580;12581;12582;12583;12584;12585;12586;12587 12834;12835;12836;12837 12835 4 ANLLEIAPHLSAPLPIMLPVYK DIEQYRMVKEALHERANLLEIAPHLSAPLP PHLSAPLPIMLPVYKWWQLPYYWVGIKLYD R A N Y K W 3 0 1 0 0 0 1 0 1 2 5 1 1 0 4 1 0 0 1 1 0 0 22 0 2399.3651 P43304;F5GYK7 P43304 145 166 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial;Glycerol-3-phosphate dehydrogenase yes no 3 0.00019177 29.126 By MS/MS By MS/MS 2 2 0.57675 0.54819 8.6839 4 Median 0.51804 0.51042 2.7192 2 0 Median 0.66883 0.58997 3.0095 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5645200 3432400 2212800 2301200 1495500 805740 3344000 1936900 1407100 0 0 0 0 0 0 0 0 0 0 0 0 2439 2325 2555 12588;12589;12590;12591 12838;12839;12840;12841;12842 12840 5 ANLLNNEAHAITMQVTK FTAYATISYLKIGPKANLLNNEAHAITMQV LLNNEAHAITMQVTKSTQNSFRAESSQTCH K A N T K S 3 0 3 0 0 1 1 0 1 1 2 1 1 0 0 0 2 0 0 1 0 0 17 0 1866.9622 P46063 P46063 576 592 RECQL ATP-dependent DNA helicase Q1 yes yes 2;3 4.3088E-11 108.59 By MS/MS By MS/MS By MS/MS 1 2 3 1.2029 1.046 8.3999 6 Median 1.2216 1.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93911 0.92967 0.53521 2 0 Median 1.2625 1.0704 2.0897 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121040000 58846000 62193000 11035000 5045100 5990400 0 0 0 97162000 48175000 48988000 12841000 5626200 7214800 0 0 0 0 0 0 2440 2337 2556 12592;12593;12594;12595;12596;12597 12843;12844;12845;12846;12847;12848;12849;12850 12849 8 ANLNALDR HEQKQQVVKFLIKKKANLNALDRYGRTALI KFLIKKKANLNALDRYGRTALILAVCCGSA K A N D R Y 2 1 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 885.46683 Q6S8J3;A5A3E0;P0CG38;P0CG39;A0A0C4DH93;A0A0G2JMU2;A0A0A6YYL3;Q495V5;A0A087X067;A0A087WTB9;A0A087X187;A0A087X092;D7UEQ8;A0A087WXQ7;A0A0G2JRD4;A0A0D9SFE8;A0A0G2JQB7;A6NC16;Q6S5H5;A6NI47;B2RU33;H3BUK9;Q6S545;A0JP26;A0A0G2JQ08 Q6S8J3 296 303 POTEE;POTEF;POTEI;POTEJ;POTEB3;POTEB;POTEH;POTEG;POTEC;POTEM;POTEB2 POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;POTE ankyrin domain family member G;Putative POTE ankyrin domain family member M;POTE ankyrin domain family member C;POTE ankyrin domain family member B2;POTE ankyrin domain family member H;POTE ankyrin domain family member B3 no no 2 0.0095084 60.682 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1712 1.068 25.256 4 Median 1.1511 1.1345 NaN 1 0 Median 1.1916 1.0054 NaN 1 0 Median 0.99132 0.99252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9778 1.7022 NaN 1 0 Median 14118000 6360800 7757500 4591100 2228100 2363000 7120800 3101000 4019800 1545600 738650 806970 0 0 0 0 0 0 860800 293060 567740 2441 3181 2557 12598;12599;12600;12601 12851;12852;12853 12853 3 ANLPQSFQVDTSK KVKCSGPGLSPGMVRANLPQSFQVDTSKAG VRANLPQSFQVDTSKAGVAPLQVKVQGPKG R A N S K A 1 0 1 1 0 2 0 0 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1433.7151 P21333;Q60FE5;A0A087WWY3 P21333 1465 1477 FLNA Filamin-A no no 2 4.7841E-07 121.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1 1.3493 1.2546 16.65 8 Median NaN NaN NaN 0 0 Median 1.3519 1.2176 9.8603 3 1 Median 1.1096 1.219 NaN 1 0 Median 1.5543 1.4726 3.2891 2 1 Median 1.2328 1.2912 NaN 1 0 Median 1.0357 0.88749 NaN 1 0 Median 311570000 136370000 175200000 0 0 0 229550000 99406000 130140000 44734000 20957000 23777000 17793000 7050300 10742000 17375000 7646600 9728600 2118300 1305000 813310 2442 2088;3120 2558 12602;12603;12604;12605;12606;12607;12608;12609 12854;12855;12856;12857;12858;12859;12860;12861 12858 8 ANLQELDQFLGPYPYATLKK VDLSPAPESEVEAMRANLQELDQFLGPYPY LDQFLGPYPYATLKKWISLTNFISEATVEK R A N K K W 2 0 1 1 0 2 1 1 0 0 4 2 0 1 2 0 1 0 2 0 0 0 20 1 2308.2103 A2A2Q9;Q9Y312 A2A2Q9 113 132 AAR2 Protein AAR2 homolog yes no 3 0.020313 14.46 By MS/MS By matching 1 1 0.93791 0.85648 0.78183 2 Median 0.90953 0.85176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96718 0.86123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2307800 1207800 1100000 2113100 1100900 1012200 0 0 0 0 0 0 194680 106920 87764 0 0 0 0 0 0 2443 497 2559 12610;12611 12862;12863 12863 2 ANLQIDQINTDLNLER EEQGNTELINDRLKKANLQIDQINTDLNLE NLQIDQINTDLNLERSHAQKNENARQQLER K A N E R S 1 1 3 2 0 2 1 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1868.9592 P35579 P35579 1755 1770 MYH9 Myosin-9 yes yes 2;3 1.1349E-33 172.92 By MS/MS By MS/MS By MS/MS 4 5 1 1.1393 1.0635 30.881 10 Median 1.2852 1.2164 26.625 4 0 Median 1.0721 0.94296 16.137 5 0 Median 1.4605 1.5943 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 335320000 155740000 179580000 78955000 33384000 45571000 245500000 117510000 127990000 10867000 4840400 6026500 0 0 0 0 0 0 0 0 0 2444 2244 2560 12612;12613;12614;12615;12616;12617;12618;12619;12620;12621 12864;12865;12866;12867;12868;12869;12870;12871 12868 7 ANLQQAIVTPLKPVDNTYYK NGTGGLFQGKTPLRKANLQQAIVTPLKPVD AIVTPLKPVDNTYYKEAEKENLVEQSIPSN K A N Y K E 2 0 2 1 0 2 0 0 0 1 2 2 0 0 2 0 2 0 2 2 0 0 20 1 2275.2212 Q9ULW0 Q9ULW0 64 83 TPX2 Targeting protein for Xklp2 yes yes 3 5.1105E-06 47.397 By MS/MS By matching By MS/MS 1 2 1 0.86962 0.87671 21.497 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86527 0.98764 NaN 1 0 Median 0.79605 0.71203 12.577 2 0 Median 0.92087 1.0318 NaN 1 0 Median NaN NaN NaN 0 0 Median 16301000 8612700 7687900 0 0 0 0 0 0 12167000 6428200 5738800 535910 288710 247200 3597600 1895700 1701800 0 0 0 2445 4330 2561 12622;12623;12624;12625 12872;12873;12874;12875 12873 4 ANLVFKEIEK QIEAVPTSSASDGFKANLVFKEIEKKLEEE SDGFKANLVFKEIEKKLEEEGEQFVKKIGG K A N E K K 1 0 1 0 0 0 2 0 0 1 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1189.6707 P22307;H0YF61;H0YD06 P22307 433 442 SCP2 Non-specific lipid-transfer protein yes no 2;3 0.0018493 95.502 By MS/MS By MS/MS By matching 3 2 1 1.4139 1.3198 68.277 4 Median 0.69326 0.66185 82.216 2 0 Median 1.6974 1.4715 NaN 1 0 Median 1.5815 1.6207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71641000 22833000 48809000 44439000 15134000 29305000 25528000 7069300 18459000 1674300 629440 1044800 0 0 0 0 0 0 0 0 0 2446 2099 2562 12626;12627;12628;12629;12630;12631 12876;12877;12878;12879;12880 12876 5 ANLVLLSGANEGK PEVIGEALNQLVPQKANLVLLSGANEGKCD QKANLVLLSGANEGKCDLKEKWFGTQYSIE K A N G K C 2 0 2 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 13 0 1284.7038 O43847;G3V1R5;F5H7V1;H0Y5G9 O43847 607 619 NRD1 Nardilysin yes no 2 0.039215 26.043 By MS/MS 1 1.1024 0.93599 NaN 1 Median NaN NaN NaN 0 0 Median 1.1024 0.93599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6317700 2686700 3631100 0 0 0 6317700 2686700 3631100 0 0 0 0 0 0 0 0 0 0 0 0 2447 1597 2563 12632 12881 12881 1 ANNIDYTVHSVR PNACGGIALILSGLKANNIDYTVHSVRRAL GLKANNIDYTVHSVRRALENTAVKADNIEV K A N V R R 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 1 2 0 0 12 0 1387.6844 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 464 475 TPP2 Tripeptidyl-peptidase 2 yes no 2;3 0.00059476 72.006 By MS/MS By MS/MS 1 2 1.1997 1.0213 5.6514 3 Median 0.93255 0.93602 NaN 1 0 Median 1.2095 1.0309 1.3162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7888000 3537200 4350800 1271300 686630 584630 6616700 2850600 3766100 0 0 0 0 0 0 0 0 0 0 0 0 2448 461 2564 12633;12634;12635 12882;12883;12884;12885 12884 4 ANNSTYGLAAAVFTK MQILKFKTIEEVVGRANNSTYGLAAAVFTK ANNSTYGLAAAVFTKDLDKANYLSQALQAG R A N T K D 4 0 2 0 0 0 0 1 0 0 1 1 0 1 0 1 2 0 1 1 0 0 15 0 1526.7729 P05091 P05091 437 451 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2 2.3467E-05 85.288 By MS/MS By matching By matching By matching 1 2 1 1 0.89777 0.90294 38.605 5 Median 0.96933 0.90294 NaN 1 0 Median 0.99418 0.85068 35.284 2 0 Median 0.89777 0.90633 NaN 1 0 Median 0.46349 0.40832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14481000 7380700 7100300 9570200 5172700 4397500 3677100 1595400 2081700 974250 462400 511840 259460 150220 109240 0 0 0 0 0 0 2449 1860 2565 12636;12637;12638;12639;12640 12886;12887 12887 2 ANNYNEAVYLVR EFVEAMIRQLKESLKANNYNEAVYLVRFLS SLKANNYNEAVYLVRFLSDLVNCHVIAAPS K A N V R F 2 1 3 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 12 0 1424.7048 Q09161 Q09161 118 129 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 3.5774E-05 142.92 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 3 2 0.96835 0.98137 38.288 10 Median 1.4602 1.3817 NaN 1 0 Median 1.5425 1.3365 NaN 1 0 Median 1.0501 1.0942 14.912 2 0 Median 1.2949 1.1159 NaN 1 1 Median 0.96021 0.97807 33.057 3 1 Plateau 0.64109 0.5325 17.232 2 0 Median 62516000 32042000 30473000 10619000 4173300 6445300 4187500 1813900 2373600 16789000 8679700 8109300 2258700 996480 1262200 24804000 14267000 10537000 3858000 2112500 1745500 2450 2747 2566 12641;12642;12643;12644;12645;12646;12647;12648;12649;12650 12888;12889;12890;12891;12892;12893;12894;12895 12891 8 ANPALYVLR GSKPLIQQAMAKIMKANPALYVLRERIRKG MAKIMKANPALYVLRERIRKGLQLYSSEPT K A N L R E 2 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1015.5815 Q6P2Q9 Q6P2Q9 1736 1744 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 3.1443E-05 154.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.0449 0.89691 7.3098 8 Median NaN NaN NaN 0 0 Median 1.0834 0.9187 6.1447 2 0 Median 0.78688 0.86669 4.1661 2 0 Median 1.1642 1.0175 2.5377 2 0 Median 0.88386 0.90125 NaN 1 0 Median 1.0447 0.86776 NaN 1 0 Median 75337000 38837000 36500000 0 0 0 11199000 5209000 5990200 33822000 18544000 15277000 3616800 1629100 1987700 23308000 11838000 11470000 3391700 1616600 1775100 2451 3157 2567 12651;12652;12653;12654;12655;12656;12657;12658 12896;12897;12898;12899;12900;12901;12902;12903;12904;12905;12906;12907;12908 12899 13 ANPDLPILIR GVRDFIEKRYVELKKANPDLPILIRECSDV VELKKANPDLPILIRECSDVQPKLWARYAF K A N I R E 1 1 1 1 0 0 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 10 0 1120.6604 O43678 O43678 47 56 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 2 0.058763 42.287 By MS/MS 1 0.41902 0.42451 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41902 0.42451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3561100 2718000 843060 0 0 0 0 0 0 3561100 2718000 843060 0 0 0 0 0 0 0 0 0 2452 1584 2568 12659 12909 12909 1 ANPFGGASHAK HDKQYKKAHLGTALKANPFGGASHAKGIVL TALKANPFGGASHAKGIVLEKVGVEAKQPN K A N A K G 3 0 1 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1055.5148 P62266;D6RD47;D6RIX0;D6R9I7;D6RDJ2 P62266 38 48 RPS23 40S ribosomal protein S23 yes no 2 0.00013729 87.149 By MS/MS By MS/MS By matching By matching By matching By matching 2 3 1 1 1 1 1.0216 0.90107 13.032 9 Median 0.90845 0.88068 2.2889 2 0 Median 1.0225 0.87683 13.746 3 0 Median 1.0216 1.0321 NaN 1 0 Median 1.178 0.94953 NaN 1 0 Median 1.0136 1.2323 NaN 1 0 Median 1.1165 0.90107 NaN 1 0 Median 11098000 5511100 5587200 3320200 1676100 1644100 6694700 3303800 3390800 707150 358550 348600 141810 68645 73165 100810 41626 59182 133770 62363 71412 2453 2577 2569 12660;12661;12662;12663;12664;12665;12666;12667;12668 12910;12911;12912;12913 12912 4 ANPGAWILR VDTIVMANLGYFQLKANPGAWILRLRKGRS GYFQLKANPGAWILRLRKGRSEDIYRIYSH K A N L R L 2 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 9 0 996.5505 Q9NYU2;Q9NYU1 Q9NYU2 1158 1166 UGGT1;UGGT2 UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2 yes no 2 0.0027284 69.998 By MS/MS By MS/MS 1 1 1.1541 1.0297 17.345 2 Median 0.97041 0.91089 NaN 1 0 Median 1.3725 1.1641 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13950000 7117400 6833100 10907000 5902800 5003900 3043800 1214600 1829200 0 0 0 0 0 0 0 0 0 0 0 0 2454 4179 2570 12669;12670 12914;12915 12914 2 ANPHNYDAWFDYLR IIVSKRRFQYEEEVKANPHNYDAWFDYLRL KANPHNYDAWFDYLRLVESDAEAEAVREVY K A N L R L 2 1 2 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 2 0 0 0 14 0 1780.7958 Q5JY65;Q9BZJ0 Q5JY65 474 487 CRNKL1 Crooked neck-like protein 1 yes no 3 0.062224 19.075 By MS/MS 1 1.0547 1.1246 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0547 1.1246 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2776800 1401200 1375600 0 0 0 0 0 0 2776800 1401200 1375600 0 0 0 0 0 0 0 0 0 2455 3061 2571 12671 12916 12916 1 ANPQLGAYAPPPHVIGR TQGIGRNIRAIRRARANPQLGAYAPPPHVI PQLGAYAPPPHVIGRISAEGGEQVERVVEG R A N G R I 3 1 1 0 0 1 0 2 1 1 1 0 0 0 4 0 0 0 1 1 0 0 17 0 1756.9373 J3KQL8 J3KQL8 344 360 APOL2 yes yes 3 0.0039804 39.143 By MS/MS 1 0.40598 0.37993 NaN 1 Median 0.40598 0.37993 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11953000 8414900 3537700 11953000 8414900 3537700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2456 1320 2572 12672 12917 12917 1 ANPQVGVAFPHIK DLDMVAIVRYAYDKRANPQVGVAFPHIKHN KRANPQVGVAFPHIKHNYECLVYVQLPFME R A N I K H 2 0 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 13 0 1376.7565 P13010 P13010 401 413 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.00029268 78.098 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 5 3 3 0.79153 0.70296 15.419 14 Median 0.74914 0.66351 3.86 2 0 Median 0.95596 0.83507 NaN 1 0 Median 0.73786 0.79834 14.707 5 1 Median 1.1044 0.95591 17.832 3 0 Plateau NaN NaN NaN 0 0 Median 0.7946 0.66504 1.5571 3 0 Median 210780000 115230000 95556000 58947000 32342000 26605000 6792100 3808700 2983400 125050000 70625000 54424000 18724000 7742900 10981000 0 0 0 1271500 708360 563180 2457 1986 2573 12673;12674;12675;12676;12677;12678;12679;12680;12681;12682;12683;12684;12685;12686 12918;12919;12920;12921;12922;12923;12924;12925;12926;12927;12928;12929;12930;12931;12932;12933;12934;12935;12936;12937;12938;12939;12940;12941;12942 12942 25 ANPTQLNTVEFLWDPAK LDIDIPMSVGIIDPRANPTQLNTVEFLWDP PTQLNTVEFLWDPAKRTSVFIQVHCISTEF R A N A K R 2 0 2 1 0 1 1 0 0 0 2 1 0 1 2 0 2 1 0 1 0 0 17 0 1942.9789 Q12800;F8VX55;F8VWL0 Q12800 165 181 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00036252 44.616 By MS/MS By matching 1 2 0.89544 0.78735 5.9563 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72663 0.72227 NaN 1 0 Median 0.91836 0.79845 1.981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7454400 4014500 3440000 0 0 0 0 0 0 6388400 3480600 2907800 1066000 533870 532130 0 0 0 0 0 0 2458 2760 2574 12687;12688;12689 12943;12944 12943 2 ANPTQLNTVEFLWDPAKR LDIDIPMSVGIIDPRANPTQLNTVEFLWDP TQLNTVEFLWDPAKRTSVFIQVHCISTEFT R A N K R T 2 1 2 1 0 1 1 0 0 0 2 1 0 1 2 0 2 1 0 1 0 0 18 1 2099.08 Q12800;F8VX55;F8VWL0 Q12800 165 182 TFCP2 Alpha-globin transcription factor CP2 yes no 3 2.9356E-06 51.193 By MS/MS By matching By matching 1 1 1 0.76875 0.86311 14.321 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76875 0.86311 NaN 1 0 Median 0.8405 0.78871 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70667 0.65199 NaN 1 0 Median 14205000 7451100 6754200 0 0 0 0 0 0 13631000 7124000 6507100 296640 190440 106200 0 0 0 277580 136680 140900 2459 2760 2575 12690;12691;12692 12945;12946 12945 2 ANPYFEYLQIR DAIKLDAIEPYHSDRANPYFEYLQIRKKIE HSDRANPYFEYLQIRKKIEEKRKILCCITP R A N I R K 1 1 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 11 0 1412.7089 Q6UB99 Q6UB99 2435 2445 ANKRD11 Ankyrin repeat domain-containing protein 11 yes yes 2 0.0051126 67.563 By MS/MS 1 3.3727 3.5956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.3727 3.5956 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6488500 1424200 5064400 0 0 0 0 0 0 6488500 1424200 5064400 0 0 0 0 0 0 0 0 0 2460 3184 2576 12693 12947 12947 1 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYK ______________________________ EPMDTSSVTHTEHYKTLIEAGLPQKVAERL M A N Y K T 2 0 3 1 0 2 5 1 2 0 1 2 1 0 1 2 3 0 1 3 0 0 30 1 3384.5528 O43390 O43390 2 31 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 4 5.3687E-30 84.948 By MS/MS By matching By MS/MS 2 2 1 0.75954 0.80227 21.87 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78489 0.86709 10.987 2 0 Median 0.65209 0.63703 26.413 2 0 Median 0.75954 0.84998 NaN 1 0 Median NaN NaN NaN 0 0 Median 73461000 39654000 33807000 0 0 0 0 0 0 51486000 27317000 24169000 3142600 1764200 1378400 18832000 10573000 8259500 0 0 0 2461 1568 2577;2578 12694;12695;12696;12697;12698 12948;12949;12950;12951 12949 504 4 ANRFEYLLK QEPDPTYEEKMQTDRANRFEYLLKQTELFA KMQTDRANRFEYLLKQTELFAHFIQPAAQK R A N L K Q 1 1 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1152.6291 O60264 O60264 89 97 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.0055024 84.568 By MS/MS By MS/MS By matching 1 2 1 1.01 1.1391 7.9906 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0083 1.1442 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94665 1.0592 11.758 2 0 Median 1.3085 1.134 NaN 1 0 Median 93015000 42071000 50944000 0 0 0 0 0 0 42347000 19741000 22607000 0 0 0 47360000 20963000 26397000 3308300 1367300 1941000 2462 1608 2579 12699;12700;12701;12702 12952;12953;12954;12955 12954 4 ANRGPAYGLSR ______________________________ ______________________________ M A N S R E 2 2 1 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 1 0 0 0 11 1 1160.6051 P37802;X6RJP6 P37802 2 12 TAGLN2 Transgelin-2 yes no 2 4.9039E-05 148.73 By MS/MS By MS/MS By MS/MS 3 2 1 0.82616 0.80809 55.502 6 Median 0.94753 0.95855 72.76 3 1 Median 0.6283 0.55381 64.576 2 1 Median 0.72034 0.74688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55541000 32748000 22793000 32978000 20001000 12977000 18269000 10266000 8003200 4293500 2481100 1812400 0 0 0 0 0 0 0 0 0 2463 2269 2580 12703;12704;12705;12706;12707;12708 12956;12957;12958;12959;12960;12961 12957 6 ANSFTVSSVAAPSWLHR EPEKLGQALTEVYAKANSFTVSSVAAPSWL SFTVSSVAAPSWLHRFIIGKKGQNLAKITQ K A N H R F 3 1 1 0 0 0 0 0 1 0 1 0 0 1 1 4 1 1 0 2 0 0 17 0 1828.922 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 361 377 HDLBP Vigilin yes no 2;3 2.803E-07 93.011 By MS/MS By MS/MS 2 1 0.95038 0.89192 25.504 3 Median 0.93457 0.87713 2.3641 2 0 Median NaN NaN NaN 0 0 Median 1.2432 1.363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33372000 16551000 16821000 30839000 15414000 15425000 0 0 0 2532600 1136600 1396000 0 0 0 0 0 0 0 0 0 2464 4 2581 12709;12710;12711 12962;12963;12964;12965 12964 4 ANSHFLVSAGSDR FLAHDQAVRTLQWCKANSHFLVSAGSDRKI CKANSHFLVSAGSDRKIKFWDLRRPYEPIN K A N D R K 2 1 1 1 0 0 0 1 1 0 1 0 0 1 0 3 0 0 0 1 0 0 13 0 1359.6531 Q8WUA4;H0Y4Q6;H7C3X9 Q8WUA4 624 636 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.00068502 47.532 By matching By MS/MS By matching 1 1 1 1.7191 1.4745 24.185 3 Median NaN NaN NaN 0 0 Median 1.9888 1.7995 NaN 1 0 Median 1.0354 1.112 NaN 1 0 Median 1.7191 1.4745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4160700 1831700 2329000 0 0 0 383480 97669 285810 2953200 1380900 1572300 824050 353120 470930 0 0 0 0 0 0 2465 3487 2582 12712;12713;12714 12966;12967 12967 2 ANSLRGEVLK ______________________________ ______________________________ M A N L K L 1 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1085.6193 G3V521;G3V4R2;G3V332;G3V427;A0A0C4DGJ8 G3V521 2 11 LYRM5 yes no 2 0.0014451 57.96 By MS/MS 1 0.82951 0.81341 NaN 1 Median 0.82951 0.81341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4520600 2564300 1956300 4520600 2564300 1956300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2466 248 2583 12715 12968;12969 12968 2 ANSNLVLQADR ______________________________ YEYKANSNLVLQADRSLIDRTRRDEPTGEV K A N D R S 2 1 2 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1199.6258 O75643;A0A494C1A5 O75643 15 25 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00014698 107.58 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 4 1.0271 0.9816 27.96 9 Median 1.0271 0.99897 NaN 1 0 Median 1.2174 1.0389 NaN 1 0 Median 0.8765 0.95537 NaN 1 0 Median 1.1776 1.0378 NaN 1 0 Median 1.2478 1.2629 35.641 2 0 Median 1.0249 0.85233 16.531 3 1 Plateau 65672000 31410000 34261000 3639400 1634600 2004800 7613500 3361900 4251600 24016000 12132000 11884000 6914900 3052100 3862800 14083000 6238300 7844700 9404900 4991600 4413300 2467 1688 2584 12716;12717;12718;12719;12720;12721;12722;12723;12724;12725 12970;12971;12972;12973;12974;12975;12976;12977;12978;12979;12980;12981;12982 12970 13 ANSVFEDLSVTLR LQLAPSEERVYMVGKANSVFEDLSVTLRQL GKANSVFEDLSVTLRQLRNRLFQENSVLSS K A N L R Q 1 1 1 1 0 0 1 0 0 0 2 0 0 1 0 2 1 0 0 2 0 0 13 0 1449.7464 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GTU8;A0A1B0GWJ8;H7C3E1;B7Z413;A0A1B0GVC7;A0A1B0GU12;A0A1B0GV60;A0A1B0GW13;H7C240;A0A1B0GVZ1 O75787 140 152 ATP6AP2 Renin receptor yes no 2 1.9408E-05 94.616 By MS/MS 1 1.2095 1.0058 NaN 1 Median NaN NaN NaN 0 0 Median 1.2095 1.0058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14191000 6406800 7784500 0 0 0 14191000 6406800 7784500 0 0 0 0 0 0 0 0 0 0 0 0 2468 316 2585 12726 12983 12983 1 ANTFVAELK NPNKIFGVTTLDIVRANTFVAELKGLDPAR TLDIVRANTFVAELKGLDPARVNVPVIGGH R A N L K G 2 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 991.53385 P40926;G3XAL0 P40926 177 185 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.0015606 80.165 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1.1404 1.0784 15.982 9 Median 1.1256 1.0494 7.2476 3 1 Median 1.4815 1.2435 7.9502 3 0 Median 0.90235 0.88118 23.537 2 0 Median 1.4082 1.1721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 712160000 319730000 392430000 443760000 210630000 233130000 156720000 60289000 96432000 60524000 27931000 32593000 51156000 20880000 30276000 0 0 0 0 0 0 2469 2292 2586 12727;12728;12729;12730;12731;12732;12733;12734;12735 12984;12985;12986;12987;12988;12989;12990;12991;12992;12993;12994;12995;12996 12992 13 ANTTAFLTPLEIK PKPSVYLSTPSSASKANTTAFLTPLEIKAK SKANTTAFLTPLEIKAKVETDDVKKNSLDE K A N I K A 2 0 1 0 0 0 1 0 0 1 2 1 0 1 1 0 3 0 0 0 0 0 13 0 1417.7817 Q9Y5K6 Q9Y5K6 558 570 CD2AP CD2-associated protein yes yes 2 0.025194 28.177 By MS/MS 1 0.88758 0.94162 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88758 0.94162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4615500 2528200 2087300 0 0 0 0 0 0 4615500 2528200 2087300 0 0 0 0 0 0 0 0 0 2470 4460 2587 12736 12997;12998 12997 2 ANTVYGLGFSSEHHLSK FTKTSQKFGQWADSRANTVYGLGFSSEHHL TVYGLGFSSEHHLSKFAEKFQEFKEAARLA R A N S K F 1 0 1 0 0 0 1 2 2 0 2 1 0 1 0 3 1 0 1 1 0 0 17 0 1845.901 Q86YM7 Q86YM7 82 98 HOMER1 Homer protein homolog 1 yes yes 3;4 5.2983E-05 47.754 By MS/MS 2 1.1813 1.2267 10.611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1813 1.2267 10.611 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26990000 11667000 15323000 0 0 0 0 0 0 26990000 11667000 15323000 0 0 0 0 0 0 0 0 0 2471 3307 2588 12737;12738 12999;13000 12999 2 ANVAVVSGAPLQGLVAR LSQYMGLSLNEEEIRANVAVVSGAPLQGLV VAVVSGAPLQGLVARPSSINYMVAPVTGND R A N A R P 4 1 1 0 0 1 0 2 0 0 2 0 0 0 1 1 0 0 0 4 0 0 17 0 1620.9311 G5EA09 G5EA09 89 105 SDCBP yes yes 2 2.9843E-10 99.215 By MS/MS By MS/MS By MS/MS 1 1 1 1.0018 0.98256 26.817 3 Median 0.96209 0.90002 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0018 0.98256 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5121 1.487 NaN 1 0 Median NaN NaN NaN 0 0 Median 15878000 7716800 8160800 11194000 5773600 5420400 0 0 0 2473600 1130200 1343400 0 0 0 2210100 813000 1397000 0 0 0 2472 1132 2589 12739;12740;12741 13001;13002;13003;13004;13005;13006 13002 6 ANVAVVSGAPLQGQLVAR LSQYMGLSLNEEEIRANVAVVSGAPLQGQL AVVSGAPLQGQLVARPSSINYMVAPVTGND R A N A R P 4 1 1 0 0 2 0 2 0 0 2 0 0 0 1 1 0 0 0 4 0 0 18 0 1748.9897 O00560 O00560 68 85 SDCBP Syntenin-1 yes yes 2 1.1381E-15 117.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.2407 1.1367 32.822 7 Median 0.99969 0.93364 NaN 1 1 Median 1.3668 1.1367 NaN 1 0 Median 1.0179 0.99326 NaN 1 1 Median 1.7719 1.4777 NaN 1 0 Median 1.2861 1.3341 0.039984 2 0 Median 0.656 0.56088 NaN 1 0 Median 85452000 40753000 44699000 53623000 26333000 27289000 10612000 4564700 6047700 9885400 4969200 4916200 2270000 856230 1413800 8719600 3794900 4924800 342180 234450 107720 2473 1470 2590 12742;12743;12744;12745;12746;12747;12748 13007;13008;13009;13010;13011;13012;13013;13014 13008 8 ANVDISAPK SLKGEGPEFDVNLSKANVDISAPKVDTNAP DVNLSKANVDISAPKVDTNAPDLSLEGPEG K A N P K V 2 0 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 9 0 913.4869 Q09666 Q09666 1025 1033 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.018899 50.04 By MS/MS By MS/MS By MS/MS 1 3 1 0.78273 0.71004 23.4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0297 1.1158 NaN 1 1 Median 0.75663 0.70663 4.5951 2 1 Median NaN NaN NaN 0 0 Median 0.806 0.69066 NaN 1 0 Median 8225500 4662800 3562700 0 0 0 0 0 0 3410600 1917500 1493200 2600700 1601600 999140 0 0 0 2214200 1143800 1070400 2474 2749 2591 12749;12750;12751;12752;12753 13015;13016;13017;13018 13018 4 ANVDKVFFDLMR EQWNVNYVETSAKTRANVDKVFFDLMREIR KTRANVDKVFFDLMREIRARKMEDSKEKNG R A N M R E 1 1 1 2 0 0 0 0 0 0 1 1 1 2 0 0 0 0 0 2 0 0 12 1 1453.7388 P11233;P11234 P11233 162 173 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B no no 3 0.0046752 35.204 By MS/MS By matching By matching 1 1 1 1.0368 1.0899 5.1906 3 Median 1.0368 1.0899 NaN 1 0 Median 1.2274 1.1479 NaN 1 0 Median 1.0178 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5494500 2457700 3036900 3509200 1537400 1971800 1673700 782450 891270 311640 137860 173780 0 0 0 0 0 0 0 0 0 2475 1958;1959 2592 12754;12755;12756 13019;13020 13020 2 ANVNEILDFFHGYR SGRVTPIKIMNLPFKANVNEILDFFHGYRI KANVNEILDFFHGYRIIPDSVSIQYNEQGL K A N Y R I 1 1 2 1 0 0 1 1 1 1 1 0 0 2 0 0 0 0 1 1 0 0 14 0 1693.8213 B9ZVT1;Q8IXT5 B9ZVT1 816 829 RBM12B RNA-binding protein 12B yes no 3 0.057 11.915 By matching By matching By MS/MS 1 1 1 0.9606 1.0621 4.8079 3 Plateau 0.9606 0.96985 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92422 0.98766 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0039 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median 3955300 1954100 2001100 386270 194910 191360 0 0 0 522760 273360 249400 0 0 0 3046200 1485800 1560400 0 0 0 2476 658 2593 12757;12758;12759 13021;13022 13021 2 ANVNLAYLGAK ERACKDPNPIIDGRKANVNLAYLGAKPRIM DGRKANVNLAYLGAKPRIMQPGFAFGVQQL K A N A K P 3 0 2 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1132.6241 Q9BX46;F6VZ39;Q9H0Z9;H0YA61;A6NG75;H0Y8S7 Q9BX46 81 91 RBM24;RBM38 RNA-binding protein 24;RNA-binding protein 38 yes no 2 0.00050993 68.224 By MS/MS By matching 1 1 0.89628 0.78911 0.67065 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.832 0.78537 NaN 1 0 Median 0.96553 0.79286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5887900 2675300 3212500 0 0 0 0 0 0 5280300 2311900 2968300 607590 363410 244180 0 0 0 0 0 0 2477 3876 2594 12760;12761 13023 13023 1 ANVTVLDTQIR VIEDTRYTLPLTEGKANVTVLDTQIRKLRS TEGKANVTVLDTQIRKLRSRSLSQIHEAAV K A N I R K 1 1 1 1 0 1 0 0 0 1 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1228.6776 Q9NZM1;H0YD14 Q9NZM1 713 723 MYOF Myoferlin yes no 2 0.057391 43.512 By MS/MS 2 0.76133 0.64342 NaN 1 Median NaN NaN NaN 0 0 Median 0.76133 0.64342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2527900 1358700 1169200 0 0 0 2527900 1358700 1169200 0 0 0 0 0 0 0 0 0 0 0 0 2478 4192 2595 12762;12763 13024;13025 13024 2 ANVVGNVWR GPHQARAAKLHGELRANVVGNVWRQYQATG LHGELRANVVGNVWRQYQATGFLWEQYSDR R A N W R Q 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3 0 0 9 0 1013.5407 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 789 797 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0083623 67.032 By MS/MS By MS/MS By matching By MS/MS By matching 2 4 1 2 2 1.2105 1.0461 79.642 11 Median 0.81634 0.76457 41.352 2 1 Median 1.2663 1.106 16.169 4 2 Median 8.6554 9.2577 NaN 1 0 Median 1.3292 1.128 1.723 2 1 Median NaN NaN NaN 0 0 Median 0.66017 0.5526 58.335 2 0 Median 103420000 49894000 53522000 74801000 36520000 38281000 19175000 9136100 10039000 2317400 770460 1547000 1715800 758780 957040 0 0 0 5407400 2709300 2698100 2479 2835 2596 12764;12765;12766;12767;12768;12769;12770;12771;12772;12773;12774 13026;13027;13028;13029;13030;13031 13026 6 ANYAVDAYFR IAFTEWIEPPKRERKANYAVDAYFREALRV KRERKANYAVDAYFREALRVSEPKAPKAPR K A N F R E 3 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 10 0 1188.5564 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 740 749 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.0035742 56.258 By MS/MS By MS/MS By matching 1 2 2 1.2426 1.292 31.216 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5803 2.1989 NaN 1 0 Median 1.2131 1.2499 4.6785 2 0 Median 1.3083 1.1145 25.448 2 0 Median 18128000 8015300 10113000 0 0 0 0 0 0 0 0 0 1378000 406790 971170 16291000 7412400 8878400 459470 196120 263350 2480 1608;643;167 2597 12775;12776;12777;12778;12779 13032;13033;13034;13035 13033 4 ANYDVLESQK QELMRRKEEIEAQIKANYDVLESQKGIGMN EAQIKANYDVLESQKGIGMNEPLVDCEGYP K A N Q K G 1 0 1 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1165.5615 F5H5V4;F5GX23;J3KN29;O00233;F5H7X1 F5H5V4 39 48 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 2 0.0035251 56.432 By MS/MS 1 0.99443 0.94439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99443 0.94439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3809400 2145400 1664000 0 0 0 0 0 0 3809400 2145400 1664000 0 0 0 0 0 0 0 0 0 2481 1003 2598 12780 13036 13036 1 ANYWWLR GQQSRIHCTRLAGDKANYWWLRHHPQVLSM CTRLAGDKANYWWLRHHPQVLSMKFKTGVK K A N L R H 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 7 0 1007.4977 P31939;H7C1S2 P31939 462 468 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.015489 71.359 By MS/MS 1 1.0682 1.011 NaN 1 Median 1.0682 1.011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17071000 8269500 8801800 17071000 8269500 8801800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2482 2207 2599 12781 13037;13038 13037 2 APAAAPFVPFSGGGQR SGPCCEHTQEKQSTRAPAAAPFVPFSGGGQ PAAAPFVPFSGGGQRLGGPPGPTRPLTSSS R A P Q R L 4 1 0 0 0 1 0 3 0 0 0 0 0 2 3 1 0 0 0 1 0 0 16 0 1528.7787 Q9BZE9;J3QL04;J3QR12;J3KRY8 Q9BZE9 236 251 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 2 0.00011206 65.5 By MS/MS 1 0.5456 0.52837 NaN 1 Median 0.5456 0.52837 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5658400 3399000 2259400 5658400 3399000 2259400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2483 3899 2600 12782 13039 13039 1 APAAAPSSLAVR ______________________________ ______________________________ M A P V R A 5 1 0 0 0 0 0 0 0 0 1 0 0 0 2 2 0 0 0 1 0 0 12 0 1109.6193 P0DMW3 P0DMW3 2 13 yes yes 2 0.0011286 56.729 By MS/MS By MS/MS 1 1 0.72155 0.62897 24.114 2 Median 0.56456 0.53037 NaN 1 0 Median 0.92221 0.74591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2197100 1090700 1106500 1211000 656650 554350 986110 434010 552100 0 0 0 0 0 0 0 0 0 0 0 0 2484 1929 2601 12783;12784 13040;13041 13040 2 APAEILNGKEISAQIR ______________________________ PAEILNGKEISAQIRARLKNQVTQLKEQVP M A P I R A 3 1 1 0 0 1 2 1 0 3 1 1 0 0 1 1 0 0 0 0 0 0 16 1 1708.9472 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 2 17 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 3.3565E-06 69.729 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2485 1968 2602 12785 13042 13042 1 APAEVQITAEQLLR AGKQRIPKVAKVKNKAPAEVQITAEQLLRE KAPAEVQITAEQLLREAKERELELLPPPPQ K A P L R E 3 1 0 0 0 2 2 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 14 0 1537.8464 Q5JY65;Q9BZJ0 Q5JY65 171 184 CRNKL1 Crooked neck-like protein 1 yes no 2 4.8686E-07 117.67 By MS/MS 2 0.88009 0.95777 9.3103 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88009 0.95777 9.3103 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5563700 3051700 2512000 0 0 0 0 0 0 5563700 3051700 2512000 0 0 0 0 0 0 0 0 0 2486 3061 2603 12786;12787 13043;13044 13044 2 APAGQLPR YKDHQTITIQEMPEKAPAGQLPRSVDVILD IQEMPEKAPAGQLPRSVDVILDDDLVDKAK K A P P R S 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 0 808.45554 P25205;J3KQ69;A0A499FHX9 P25205 208 215 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0060114 73.039 By MS/MS By matching By matching 1 1 1 0.91382 0.79159 10.161 3 Median NaN NaN NaN 0 0 Median 0.91382 0.79159 NaN 1 0 Median 0.64977 0.67603 NaN 1 0 Median 0.98491 0.81732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4866200 2460300 2405800 0 0 0 4369800 2205600 2164200 326850 183300 143550 169500 71401 98102 0 0 0 0 0 0 2487 2129 2604 12788;12789;12790 13045;13046;13047 13046 3 APAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV KDWYDVKAPAMFNIRNIGKTLVTRTQGTKI K A P I R N 2 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 918.47456 P61247;E9PFI5;D6RG13;H0Y9Y4;H0Y8L7;D6RI02 P61247 35 42 RPS3A 40S ribosomal protein S3a yes no 2 0.00082542 146.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 3 2 1.0591 0.94098 13.889 18 Median 0.93507 0.87456 0.77886 3 1 Median 1.0544 0.86472 5.5882 4 0 Median 0.85471 0.85443 23.114 3 1 Median 1.2012 1.0021 10.012 3 0 Median 1.0365 1.0399 11.013 3 0 Median 1.2964 1.0463 0.2398 2 0 Median 435700000 207540000 228160000 250650000 122510000 128140000 37689000 17855000 19834000 18933000 8867900 10065000 18168000 8011100 10157000 97349000 43682000 53667000 12908000 6610000 6297700 2488 2553 2605;2606 12791;12792;12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808 13048;13049;13050;13051;13052;13053;13054;13055;13056;13057;13058;13059;13060;13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071;13072;13073;13074;13075;13076;13077;13078;13079 13069 1228 32 APAMQPAEIQFAQR ______________________________ MAPAMQPAEIQFAQRLASSEKGIRDRAVKK M A P Q R L 4 1 0 0 0 3 1 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 14 0 1556.7769 Q14684 Q14684 2 15 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 2.8748E-07 158.79 By MS/MS By matching By MS/MS By matching 3 1 2 1 0.65449 0.73383 28.31 7 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6548 0.69253 17.278 3 0 Median 0.38435 0.37547 NaN 1 0 Median 0.55837 0.56638 11.01 2 0 Median 0.65515 0.53863 NaN 1 0 Median 47956000 28800000 19156000 0 0 0 0 0 0 41730000 24945000 16785000 373320 282230 91090 5331900 3308200 2023700 521100 265060 256040 2489 2890 2607;2608 12809;12810;12811;12812;12813;12814;12815 13080;13081;13082;13083 13081 1582 4 APAPKPELIAAEK DKDFPKPKKPPPPAKAPAPKPELIAAEKKY AKAPAPKPELIAAEKKYFSLKPEEKDEKST K A P E K K 4 0 0 0 0 0 2 0 0 1 1 2 0 0 3 0 0 0 0 0 0 0 13 1 1333.7606 Q9Y5K6 Q9Y5K6 347 359 CD2AP CD2-associated protein yes yes 2;3 0.00014523 73.082 By matching By matching By MS/MS 1 1 3 0.63166 0.61707 32.068 5 Median 1.2522 1.2648 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52424 0.58997 NaN 1 0 Median 0.63166 0.61707 4.4466 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10916000 6537800 4378500 286540 82106 204430 0 0 0 5117700 3241100 1876600 5512100 3214600 2297500 0 0 0 0 0 0 2490 4460 2609 12816;12817;12818;12819;12820 13084;13085 13084 2 APASVLPAATPR VEFAVEYFTRLREARAPASVLPAATPRQSL EARAPASVLPAATPRQSLGHPPPEPGPDRV R A P P R Q 4 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 1 0 0 1 0 0 12 0 1149.6506 P13861;C9J830 P13861 45 56 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 3.1557E-06 110.39 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.65245 0.5638 18.787 5 Median 0.48863 0.47677 NaN 1 0 Median 0.82854 0.68496 10.832 2 0 Median 0.47769 0.47944 NaN 1 0 Median 0.65245 0.5638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23381000 14376000 9004400 5802200 3598900 2203300 6728900 3914100 2814800 4096600 2731900 1364700 6752900 4131300 2621600 0 0 0 0 0 0 2491 1998 2610 12821;12822;12823;12824;12825 13086;13087;13088;13089;13090 13090 5 APAVQDLLTR SLVQEIHHYVTSIAKAPAVQDLLTRLLQAL TSIAKAPAVQDLLTRLLQALHIDGPRSAQV K A P T R L 2 1 0 1 0 1 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1082.6084 Q9NU22 Q9NU22 3340 3349 MDN1 Midasin yes yes 2 2.94E-05 128.38 By MS/MS By MS/MS 1 1 1.0238 0.97582 18.801 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0682 1.1146 NaN 1 1 Median 0.98116 0.85435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49105000 23681000 25424000 0 0 0 0 0 0 46794000 22501000 24294000 2310900 1180600 1130300 0 0 0 0 0 0 2492 4112 2611 12826;12827 13091;13092;13093 13091 3 APDAEELDK YSQLLMYPYGYSVKKAPDAEELDKVARLAA GYSVKKAPDAEELDKVARLAAKALASVSGT K A P D K V 2 0 0 2 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 9 0 986.45566 Q9UI42;B7Z5J4 Q9UI42 325 333 CPA4 Carboxypeptidase A4 yes no 2 0.039605 33.797 By MS/MS 1 0.92057 0.88594 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92057 0.88594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11722000 6192800 5529200 0 0 0 0 0 0 11722000 6192800 5529200 0 0 0 0 0 0 0 0 0 2493 633 2612 12828 13094 13094 1 APDDLVAPVVK MASSRASSTQATKTKAPDDLVAPVVKKPHI TKTKAPDDLVAPVVKKPHIYYGSLEEKERE K A P V K K 2 0 0 2 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 11 0 1122.6285 O43172 O43172 16 26 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.00014501 84.213 By matching By MS/MS 1 1 0.9059 1.0029 51.974 2 Median 1.1657 1.4483 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.704 0.69446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10952000 6172800 4779000 3266900 1713100 1553800 0 0 0 7684800 4459600 3225200 0 0 0 0 0 0 0 0 0 2494 1557 2613 12829;12830 13095 13095 1 APDELHYTYLDTFGRPVIVAYKK GAKNIEIDSPYEISRAPDELHYTYLDTFGR YLDTFGRPVIVAYKKNLVEQHIQDIVVHYT R A P K K N 2 1 0 2 0 0 1 1 1 1 2 2 0 1 2 0 2 0 3 2 0 0 23 2 2695.401 P04843;B7Z4L4 P04843 392 414 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 4 0.023545 14.107 By MS/MS 1 0.9113 0.98653 NaN 1 Median 0.9113 0.98653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19162000 9674000 9488500 19162000 9674000 9488500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2495 1853 2614 12831 13096 13096 1 APDFVFYAPR SFNDKKFVIKPIDKKAPDFVFYAPRLRINK PIDKKAPDFVFYAPRLRINKRILALCMGNH K A P P R L 2 1 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 1 1 0 0 10 0 1181.5869 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 264 273 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.00034691 119.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 3 1 2 0.82532 0.79144 31.023 15 Median 0.82532 0.79103 6.3122 3 0 Median 0.91523 0.79144 13.108 3 0 Median 0.78838 0.78526 10.396 3 0 Plateau 0.94332 0.81301 1.1395 3 0 Median 0.78406 0.81889 NaN 1 0 Median 0.53891 0.45911 87.859 2 0 Median 233150000 123360000 109780000 75114000 40893000 34221000 21336000 11070000 10266000 118760000 62338000 56423000 15582000 7885000 7696500 1172000 546310 625650 1180700 631230 549480 2496 2139;879;2235 2615 12832;12833;12834;12835;12836;12837;12838;12839;12840;12841;12842;12843;12844;12845;12846 13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108;13109;13110;13111;13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122 13103 26 APDGYIVK EFKFPPKDGFVALSKAPDGYIVKSQHSGNA GFVALSKAPDGYIVKSQHSGNAQVTQTKFL K A P V K S 1 0 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 1 0 0 8 0 861.45962 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 180 187 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.014079 51.787 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.93527 0.85716 9.6487 4 Median 0.93128 0.88623 NaN 1 0 Median 0.948 0.82904 NaN 1 0 Median 0.93928 0.99159 NaN 1 0 Median 0.91679 0.79478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17127000 7865200 9262000 4151000 1859100 2291900 4722700 2060300 2662300 4996100 2378400 2617600 3257400 1567300 1690100 0 0 0 0 0 0 2497 135 2616 12847;12848;12849;12850 13123;13124;13125 13123 3 APDMSSSEEFPSFGAQVAPK FVVRDAPWTASSSEKAPDMSSSEEFPSFGA SSEEFPSFGAQVAPKTLPWGPKR_______ K A P P K T 3 0 0 1 0 1 2 1 0 0 0 1 1 2 3 4 0 0 0 1 0 0 20 0 2080.9412 Q00341;A0A024R4E5;H0Y394 Q00341 1241 1260 HDLBP Vigilin yes no 2 0.00079096 34.685 By MS/MS By matching By matching 1 1 1 0.72237 0.65876 3.8582 3 Median 0.64403 0.61935 NaN 1 0 Median 0.72237 0.65876 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74023 0.66491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4858200 2827300 2030900 4365900 2549600 1816200 208430 119340 89090 0 0 0 283900 158360 125530 0 0 0 0 0 0 2498 4 2617 12851;12852;12853 13126 13126 1 APDVEGQGLDWSLK QVPDVDIRGPKVDIKAPDVEGQGLDWSLKI KAPDVEGQGLDWSLKIPKMKMPKFSMPSLK K A P L K I 1 0 0 2 0 1 1 2 0 0 2 1 0 0 1 1 0 1 0 1 0 0 14 0 1513.7413 Q09666 Q09666 1112 1125 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 5.4319E-08 103.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 2 2 0.95833 0.92155 14.602 9 Median 0.90569 0.90836 5.3243 3 3 Median 1.1458 0.99942 NaN 1 0 Median 1.0186 1.0867 NaN 1 0 Median 1.0264 0.96216 2.3325 2 0 Median NaN NaN NaN 0 0 Median 0.8033 0.71566 6.2276 2 0 Median 67710000 34111000 33599000 36368000 18993000 17375000 4780500 2461000 2319600 22318000 10611000 11707000 3949100 1910100 2039000 0 0 0 293910 135820 158090 2499 2749 2618 12854;12855;12856;12857;12858;12859;12860;12861;12862 13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139 13131 13 APDVEQAIEVLTR SSANHSLQLASQIQKAPDVEQAIEVLTRSS QKAPDVEQAIEVLTRSSLEVELAAKEREIA K A P T R S 2 1 0 1 0 1 2 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 13 0 1439.762 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 284 296 CUX1 Protein CASP no no 2 0.00049996 72.006 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 1 4 1 1 0.98862 0.95698 24.143 9 Median 1.1406 1.1386 NaN 1 0 Median 1.6058 1.4246 37.061 2 0 Median 0.87298 0.95698 NaN 1 0 Median 0.98379 0.86782 7.3705 4 0 Median 0.92165 0.93961 NaN 1 0 Median NaN NaN NaN 0 0 Median 14028000 6410200 7617600 649920 289150 360780 4135600 1406100 2729500 7488200 3829200 3659000 1201300 608650 592630 522870 260930 261930 29899 16189 13711 2500 388;2847 2619 12863;12864;12865;12866;12867;12868;12869;12870;12871;12872 13140;13141;13142;13143 13141 4 APEAAAAEREEVAYDPEDETILEEAK DTQLVERGRRHEVERAPEAAAAEREEVAYD VAYDPEDETILEEAKVTVDDLPNRMCADVR R A P A K V 7 1 0 2 0 0 8 0 0 1 1 1 0 0 2 0 1 0 1 1 0 0 26 1 2845.3141 Q9BTC0 Q9BTC0 1413 1438 DIDO1 Death-inducer obliterator 1 yes yes 3 1.1122E-19 70.761 By MS/MS 1 0.52752 0.63195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52752 0.63195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31691000 16126000 15565000 0 0 0 0 0 0 31691000 16126000 15565000 0 0 0 0 0 0 0 0 0 2501 3824 2620 12873 13144;13145 13144 2 APEDAGPQPGSYEIR AEDAAAQAVETPGWKAPEDAGPQPGSYEIR APEDAGPQPGSYEIRHYGPAKWVSTSVESM K A P I R H 2 1 0 1 0 1 2 2 0 1 0 0 0 0 3 1 0 0 1 0 0 0 15 0 1585.7372 Q9Y5Z4;Q5THN1 Q9Y5Z4 27 41 HEBP2 Heme-binding protein 2 yes no 2 1.5421E-09 140.14 By MS/MS By MS/MS By matching 1 1 1 0.63246 0.54425 14.96 3 Median 0.46778 0.44379 NaN 1 0 Median 0.64352 0.54425 NaN 1 0 Median 0.63246 0.594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24928000 15182000 9745500 13232000 8459500 4772700 9943100 5563100 4380000 1752600 1159800 592770 0 0 0 0 0 0 0 0 0 2502 4473 2621 12874;12875;12876 13146;13147;13148 13147 3 APEDFSQNWK KKPASGPGAVVRPPKAPEDFSQNWKALQEW VRPPKAPEDFSQNWKALQEWLLKQKSQAPE K A P W K A 1 0 1 1 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 10 0 1220.5462 Q9GZR2;A0A0C4DG31 Q9GZR2 62 71 REXO4 RNA exonuclease 4 yes no 2 0.014222 39.022 By MS/MS 1 0.93599 0.89127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93599 0.89127 NaN 1 0 Median NaN NaN NaN 0 0 Median 4961700 2048100 2913600 0 0 0 0 0 0 0 0 0 0 0 0 4961700 2048100 2913600 0 0 0 2503 3912 2622 12877 13149 13149 1 APEFPSYK VSKEAWSKLQQYFPKAPEFPSYKECCSQCK LQQYFPKAPEFPSYKECCSQCKILEREGEE K A P Y K E 1 0 0 0 0 0 1 0 0 0 0 1 0 1 2 1 0 0 1 0 0 0 8 0 937.45453 Q86UV5;A0A0A0MRS6 Q86UV5 682 689 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.0072183 67.981 By MS/MS By matching 1 1 0.68396 0.65092 9.6841 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64491 0.69705 NaN 1 0 Median 0.72537 0.60784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3687800 2088400 1599400 0 0 0 0 0 0 2610900 1526300 1084500 1076900 562100 514830 0 0 0 0 0 0 2504 3281 2623 12878;12879 13150 13150 1 APEIMLNSK HTGFLTEYVATRWYRAPEIMLNSKGYTKSI ATRWYRAPEIMLNSKGYTKSIDIWSVGCIL R A P S K G 1 0 1 0 0 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 9 0 1001.5216 P27361;E9PJF0;E9PQW4;B3KR49;P28482 P28482 195 203 MAPK3;MAPK1 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase;Mitogen-activated protein kinase 1 no no 2 0.018263 65.305 By MS/MS 2 1.0008 0.85587 NaN 1 Median NaN NaN NaN 0 0 Median 1.0008 0.85587 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5653600 2487200 3166400 0 0 0 5653600 2487200 3166400 0 0 0 0 0 0 0 0 0 0 0 0 2505 2166;2153 2624 12880;12881 13151;13152 13152 2 APELFSYIAK YSSAAEQLLAEYLERAPELFSYIAKNSQED EYLERAPELFSYIAKNSQEDVFYEDDIWPG R A P A K N 2 0 0 0 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 10 0 1137.607 Q8IZH2;H7C5E4 Q8IZH2 994 1003 XRN1 5-3 exoribonuclease 1 yes no 2 0.043034 30.167 By MS/MS By matching By matching By matching 2 1 2 2 1.0343 0.91542 27.195 7 Median 0.78963 0.77991 20.264 2 0 Median 1.1271 0.98274 NaN 1 0 Median 1.1731 1.2985 15.899 2 0 Median 0.87299 0.79428 20.074 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8345400 4639900 3705500 4377500 2567700 1809800 1451600 820680 630950 2342900 1149800 1193000 173370 101720 71647 0 0 0 0 0 0 2506 3350 2625 12882;12883;12884;12885;12886;12887;12888 13153 13153 1 APELGHGVEGGNVAKPDPEVTER LGLCWSLAKAHPLARAPELGHGVEGGNVAK EGGNVAKPDPEVTERCSDGWGFDATTLDEH R A P E R C 2 1 1 1 0 0 4 4 1 0 1 1 0 0 3 0 1 0 0 3 0 0 23 1 2357.1612 CON__Q3SZV7 CON__Q3SZV7 29 51 yes yes 3;4 1.8976E-19 87.208 By MS/MS 2 0.050633 0.050844 NaN 1 Median 0.050633 0.050844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11654000 11532000 121670 11654000 11532000 121670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 2507 780 2626 12889;12890 13154;13155 13154 2 APELLFGAR PNRAYTHQVVTRWYRAPELLFGARMYGVGV VTRWYRAPELLFGARMYGVGVDMWAVGCIL R A P A R M 2 1 0 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 9 0 972.53927 P50613;D6REC6;D6R9G1;D6RAD4 P50613 180 188 CDK7 Cyclin-dependent kinase 7 yes no 2 0.00064478 107.43 By matching By MS/MS By matching 3 2 1 0.84519 0.77363 16.375 6 Median NaN NaN NaN 0 0 Median 0.89147 0.75442 21.653 3 0 Median 0.73514 0.76147 5.7967 2 0 Median 1.0892 0.91708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14329000 7818000 6511200 0 0 0 3109200 1494800 1614400 10948000 6196900 4751300 271800 126340 145460 0 0 0 0 0 0 2508 2419 2627 12891;12892;12893;12894;12895;12896 13156 13156 1 APELLFRPDLIGEESEGIHEVLVFAIQK LPDGSTIEIGPSRFRAPELLFRPDLIGEES ESEGIHEVLVFAIQKSDMDLRRTLFSNIVL R A P Q K S 2 1 0 1 0 1 5 2 1 3 4 1 0 2 2 1 0 0 0 2 0 0 28 1 3148.6809 P61163;R4GMT0 P61163 258 285 ACTR1A Alpha-centractin yes no 3;4 1.0475E-28 75.226 By MS/MS 2 0.79045 0.7439 4.0857 2 Median NaN NaN NaN 0 0 Median 0.79045 0.7439 4.0857 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15084000 8350400 6733100 0 0 0 15084000 8350400 6733100 0 0 0 0 0 0 0 0 0 0 0 0 2509 2547 2628 12897;12898 13157;13158;13159;13160 13160 4 APELLLGAK PLKAYTPVVVTQWYRAPELLLGAKEYSTAV VTQWYRAPELLLGAKEYSTAVDMWSVGCIF R A P A K E 2 0 0 0 0 0 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 9 0 910.54877 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 556 564 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.038513 34.089 By matching By matching By MS/MS By matching By matching 1 1 1 2 2 0.96971 0.92553 11.82 7 Median 0.97724 0.98694 NaN 1 0 Median 1.1843 1.0569 NaN 1 0 Median 0.75567 0.81398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95375 0.94545 3.0113 2 0 Median 0.95848 0.80885 10.511 2 0 Median 9863400 4879500 4983900 1171100 594270 576850 425920 176800 249120 2411000 1305200 1105800 0 0 0 4940500 2349200 2591300 914860 454060 460800 2510 259 2629 12899;12900;12901;12902;12903;12904;12905 13161 13161 1 APELLLGAR PLADLDPVVVTFWYRAPELLLGARHYTKAI VTFWYRAPELLLGARHYTKAIDIWAIGCIF R A P A R H 2 1 0 0 0 0 1 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 938.55492 Q5JQZ9;P49336;Q9BWU1;A0A0D9SFZ2 Q5JQZ9 141 149 CDK19;CDK8 Cyclin-dependent kinase 8;Cyclin-dependent kinase 19 yes no 2 0.00067915 105.12 By MS/MS By matching 1 1 0.98487 0.94266 9.4417 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96389 1.0077 NaN 1 0 Median 1.0063 0.88178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3455400 1626200 1829200 0 0 0 0 0 0 3185300 1493500 1691800 270080 132670 137410 0 0 0 0 0 0 2511 2378 2630 12906;12907 13162;13163 13163 2 APEPTPQQVAQQQ LQMSERNILSRLANRAPEPTPQQVAQQQ__ NRAPEPTPQQVAQQQ_______________ R A P Q Q - 2 0 0 0 0 5 1 0 0 0 0 0 0 0 3 0 1 0 0 1 0 0 13 0 1420.6947 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0 Q14839 1900 1912 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0034229 60.102 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14439000 0 0 0 0 0 0 0 0 12195000 0 0 2243100 0 0 0 0 0 0 0 0 2512 246 2631 12908;12909 13164;13165 13164 2 APEQRPAPNAAPVDPTLR IFAILQSVKAREEGRAPEQRPAPNAAPVDP QRPAPNAAPVDPTLRTKQPIPAAYNRYDQE R A P L R T 4 2 1 1 0 1 1 0 0 0 1 0 0 0 5 0 1 0 0 1 0 0 18 1 1898.9963 Q6P1J9;A0A3B3IRP5;A0A2R8YHB3 Q6P1J9 264 281 CDC73 Parafibromin yes no 3 2.4013E-06 58.693 By matching By MS/MS By MS/MS 1 1 2 0.46775 0.43908 6.0274 4 Median NaN NaN NaN 0 0 Median 0.45512 0.41334 NaN 1 0 Median 0.39849 0.4304 NaN 1 0 Median 0.50992 0.46181 4.3153 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25436000 17629000 7806600 0 0 0 3005400 2067800 937640 13416000 9473000 3943400 9014000 6088500 2925500 0 0 0 0 0 0 2513 3150 2632 12910;12911;12912;12913 13166;13167;13168;13169 13167 4 APESLFLLEEMR DSDQFQLGRSKVFIKAPESLFLLEEMRERK FIKAPESLFLLEEMRERKYDGYARVIQKSW K A P M R E 1 1 0 0 0 0 3 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 12 0 1433.7225 H0YNQ8;Q12965 H0YNQ8 171 182 MYO1E Unconventional myosin-Ie yes no 2 0.0002496 84.17 By matching By MS/MS By matching 1 1 1 1.0686 0.93547 83.502 3 Plateau 0.77046 0.82394 NaN 1 0 Median 1.0686 0.93547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18515 0.20757 NaN 1 0 Median 1800000 955120 844870 480630 258530 222100 1104200 588710 515450 0 0 0 0 0 0 0 0 0 215210 107880 107330 2514 1205 2633 12914;12915;12916 13170 13170 1 APESQSVTPKPLETEPSR STGGLPVASEDGALRAPESQSVTPKPLETE SQSVTPKPLETEPSRETTWSIGLQVTVPFM R A P S R E 1 1 0 0 0 1 3 0 0 0 1 1 0 0 4 3 2 0 0 1 0 0 18 1 1951.9851 D6R9S7;D6RHE3;D6RDB0;Q96GZ6;D6RF72;D6R9M9;D6R9X6;D6R925;D6RJC0;D6RC02 D6R9S7 42 59 SLC41A3 Solute carrier family 41 member 3 yes no 3 1.7441E-06 70.942 By MS/MS 1 0.62549 0.58317 NaN 1 Median NaN NaN NaN 0 0 Median 0.62549 0.58317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4649600 2598300 2051300 0 0 0 4649600 2598300 2051300 0 0 0 0 0 0 0 0 0 0 0 0 2515 806 2634 12917 13171 13171 1 APEVLPKPR ______________________________ ______________________________ M A P P R M 1 1 0 0 0 0 1 0 0 0 1 1 0 0 3 0 0 0 0 1 0 0 9 1 1005.5971 P09669 P09669 2 10 COX6C Cytochrome c oxidase subunit 6C yes yes 2 0.0039296 95.531 By MS/MS By MS/MS 1 2 0.54076 0.4678 24.046 3 Median 0.32299 0.31672 NaN 1 0 Median 0.54847 0.47933 3.4432 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8079200 5541800 2537300 3478900 2577700 901210 4600300 2964200 1636100 0 0 0 0 0 0 0 0 0 0 0 0 2516 1921 2635 12918;12919;12920 13172;13173;13174;13175 13175 4 APEVNLNAPDVDVHGPDWNLK PNLEGDFKGPKVDIKAPEVNLNAPDVDVHG NAPDVDVHGPDWNLKMPKMKMPKFSVSGLK K A P L K M 2 0 3 3 0 0 1 1 1 0 2 1 0 0 3 0 0 1 0 3 0 0 21 0 2299.1233 Q09666 Q09666 3453 3473 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 2.1216E-12 78.708 By MS/MS By MS/MS By matching 1 2 1 0.66309 0.61913 22.518 4 Median 0.55842 0.56035 NaN 1 0 Median 0.64752 0.56398 35.144 2 0 Median NaN NaN NaN 0 0 Median 0.78739 0.68408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32098000 18725000 13374000 25435000 15252000 10183000 6488000 3375200 3112800 0 0 0 175210 96953 78260 0 0 0 0 0 0 2517 2749 2636 12921;12922;12923;12924 13176;13177;13178 13176 3 APEVSQHVYQAYETILKN GNPSCTDLELSLKCRAPEVSQHVYQAYETI VSQHVYQAYETILKN_______________ R A P K N - 2 0 1 0 0 2 2 0 1 1 1 1 0 0 1 1 1 0 2 2 0 0 18 1 2089.048 Q10567 Q10567 932 949 AP1B1 AP-1 complex subunit beta-1 yes yes 3 0.070827 4.7096 By MS/MS By matching 1 1 0.97618 0.90579 2.2721 2 Median 0.91364 0.89135 NaN 1 0 Median 1.043 0.92046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6834900 3641400 3193500 4954200 2735400 2218800 1880700 905990 974660 0 0 0 0 0 0 0 0 0 0 0 0 2518 2752 2637 12925;12926 13179 13179 1 APFDLFENK EGQLEFRALLFIPRRAPFDLFENKKKKNNI LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R A P N K K 1 0 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1079.5288 P08238;Q58FF7 P08238 339 347 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.0038329 62.546 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.0488 0.92009 25.651 6 Median 1.0512 0.91988 NaN 1 0 Median 0.92951 0.8287 12.521 2 0 Median 1.0464 1.1151 NaN 1 0 Median 1.0581 0.9203 NaN 1 0 Median 1.5488 1.5936 NaN 1 0 Median NaN NaN NaN 0 0 Median 65518000 31424000 34093000 46340000 22748000 23592000 15390000 7164400 8225900 1506000 721220 784760 602250 259320 342930 1679600 531690 1147900 0 0 0 2519 1899 2638 12927;12928;12929;12930;12931;12932 13180;13181;13182 13180 3 APFDLFENKK EGQLEFRALLFIPRRAPFDLFENKKKKNNI FIPRRAPFDLFENKKKKNNIKLYVRRVFIM R A P K K K 1 0 1 1 0 0 1 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 10 1 1207.6237 P08238;Q58FF7 P08238 339 348 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2;3 8.7802E-05 99.139 By MS/MS By matching By matching 2 1 1 1.0211 1.0716 6.3594 4 Median 1.0618 1.0897 7.6846 2 0 Median 1.038 1.0039 NaN 1 0 Median 0.9735 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36086000 17097000 18989000 32979000 15673000 17306000 2049900 988050 1061800 1057900 436580 621280 0 0 0 0 0 0 0 0 0 2520 1899 2639 12933;12934;12935;12936 13183;13184;13185;13186 13185 4 APFDLFENR EGQLEFRALLFVPRRAPFDLFENRKKKNNI LFVPRRAPFDLFENRKKKNNIKLYVRRVFI R A P N R K 1 1 1 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 9 0 1107.5349 P07900 P07900 347 355 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.00011364 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 2 1 0.9673 0.89519 25.035 10 Median 1.1562 1.1213 21.352 2 0 Median 0.93627 0.80997 5.5488 3 0 Median 0.87725 0.93341 NaN 1 0 Median 0.99667 0.85855 NaN 1 0 Median 1.1374 1.1763 13.225 2 0 Median 0.6976 0.57656 NaN 1 0 Median 130980000 62640000 68341000 81960000 38510000 43450000 37635000 18506000 19129000 7320500 3830000 3490500 1253700 639460 614230 2752200 1122000 1630200 59635 33050 26585 2521 1894 2640 12937;12938;12939;12940;12941;12942;12943;12944;12945;12946 13187;13188;13189;13190;13191;13192;13193;13194 13188 8 APFDLFENRK EGQLEFRALLFVPRRAPFDLFENRKKKNNI FVPRRAPFDLFENRKKKNNIKLYVRRVFIM R A P R K K 1 1 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1235.6299 P07900 P07900 347 356 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2;3 0.00056214 78.334 By MS/MS By matching By matching 2 1 1 0.9284 0.94273 11.995 4 Median 0.96621 0.99175 3.4064 2 0 Median 0.91416 0.91798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80613 0.77167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17718000 8651000 9067400 16180000 7830300 8349300 697490 413580 283910 0 0 0 841270 407060 434220 0 0 0 0 0 0 2522 1894 2641 12947;12948;12949;12950 13195;13196;13197;13198 13198 4 APFHQLR ISIKKALDTKIGRYKAPFHQLRISYGTNKG DTKIGRYKAPFHQLRISYGTNKGKNYTEEE K A P L R I 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 867.47152 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 930 936 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.040961 44.611 By matching By MS/MS By matching 1 1 1 1.1485 0.96006 13.302 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4103 1.2037 NaN 1 0 Median 0.90032 0.96006 NaN 1 0 Median 1.1485 0.95218 NaN 1 0 Median 2866900 1362300 1504700 0 0 0 0 0 0 0 0 0 965840 408500 557340 1557100 776160 780930 344010 177620 166390 2523 1608;643;167 2642 12951;12952;12953 13199 13199 1 APFNQEGQSTGPPPLIPGLGQQGAQGR PFQQQKTPLLGDGPRAPFNQEGQSTGPPPL PPLIPGLGQQGAQGRIPPLNPGQGPGPNKG R A P G R I 2 1 1 0 0 5 1 6 0 1 2 0 0 1 5 1 1 0 0 0 0 0 27 0 2701.3572 Q9C0J8 Q9C0J8 916 942 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2;3 2.5396E-26 84.327 By MS/MS By MS/MS By MS/MS 2 1 1 0.51957 0.49914 17.853 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50634 0.55234 28.623 2 1 Median 0.59153 0.52024 NaN 1 0 Median 0.45635 0.4789 NaN 1 0 Median NaN NaN NaN 0 0 Median 19425000 13426000 5998300 0 0 0 0 0 0 16363000 11301000 5061900 658650 436920 221730 2403400 1688700 714700 0 0 0 2524 3907 2643 12954;12955;12956;12957 13200;13201;13202;13203;13204;13205 13200 6 APGAEEDDSELQR APKTKEKNTKKVDHRAPGAEEDDSELQRAW HRAPGAEEDDSELQRAWGALIKEKEQSRQK R A P Q R A 2 1 0 2 0 1 3 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1415.6165 Q53F19;K7ELP6 Q53F19 567 579 C17orf85 Uncharacterized protein C17orf85 yes no 2 7.4492E-07 112.13 By MS/MS By MS/MS By MS/MS 2 1 1 0.73425 0.7647 1.4868 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7153 0.7585 1.3651 2 0 Median 0.90624 0.77898 NaN 1 0 Median 0.74482 0.76353 NaN 1 0 Median NaN NaN NaN 0 0 Median 12398000 6348300 6050200 0 0 0 0 0 0 2565800 1186400 1379500 1007400 474880 532510 8825200 4687100 4138200 0 0 0 2525 3027 2644 12958;12959;12960;12961 13206;13207;13208;13209;13210;13211 13209 6 APGAEEYAQQDVLK PGVLHCTTKFCDYGKAPGAEEYAQQDVLKK KAPGAEEYAQQDVLKKSYSKAFTLTISALF K A P L K K 3 0 0 1 0 2 2 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 14 0 1517.7362 P09543 P09543 262 275 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 4.2641E-08 160.15 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 3 2 1 0.87004 0.86492 26.525 9 Median 0.73002 0.69275 18.644 2 0 Median 1.1062 0.94928 NaN 1 0 Median 0.85423 0.84249 6.067 3 0 Plateau 1.0512 0.91567 6.5308 2 0 Median NaN NaN NaN 0 0 Median 1.945 1.6323 NaN 1 0 Median 47800000 23579000 24221000 9657800 4947600 4710200 3966900 1571100 2395700 24337000 12354000 11983000 9015500 4368800 4646700 0 0 0 822700 337600 485100 2526 1918 2645 12962;12963;12964;12965;12966;12967;12968;12969;12970 13212;13213;13214;13215;13216;13217;13218 13217 7 APGAEEYAQQDVLKK PGVLHCTTKFCDYGKAPGAEEYAQQDVLKK APGAEEYAQQDVLKKSYSKAFTLTISALFV K A P K K S 3 0 0 1 0 2 2 1 0 0 1 2 0 0 1 0 0 0 1 1 0 0 15 1 1645.8312 P09543 P09543 262 276 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 3 0.0057241 25.945 By MS/MS 2 0.7759 0.82934 16.112 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7759 0.82934 16.112 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14794000 8463600 6330400 0 0 0 0 0 0 14794000 8463600 6330400 0 0 0 0 0 0 0 0 0 2527 1918 2646 12971;12972 13219 13219 1 APGAGLGQDR SSSWLTRRAIRPENRAPGAGLGQDRQVPLW RPENRAPGAGLGQDRQVPLWGQLLLFLVFV R A P D R Q 2 1 0 1 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 940.47264 P50402;Q5HY57 P50402 212 221 EMD Emerin yes no 2 0.012347 41.448 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1.1167 1.0046 26.089 6 Median 0.76844 0.74166 NaN 1 0 Median 2.0234 1.6366 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.238 1.0405 NaN 1 0 Median 0.96509 0.96352 8.5497 2 0 Median 1.2695 0.98604 NaN 1 0 Median 3427500 1972600 1454900 900120 495540 404580 164780 55041 109740 0 0 0 372140 170700 201450 1848700 1197000 651660 141820 54304 87512 2528 2412 2647 12973;12974;12975;12976;12977;12978 13220;13221;13222;13223;13224 13221 5 APGAIGPYSQAVLVDR ______________________________ PGAIGPYSQAVLVDRTIYISGQIGMDPSSG K A P D R T 3 1 0 1 0 1 0 2 0 1 1 0 0 0 2 1 0 0 1 2 0 0 16 0 1612.8573 P52758 P52758 14 29 HRSP12 Ribonuclease UK114 yes yes 2 1.1405E-09 134.99 By MS/MS By MS/MS By MS/MS 1 1 1 0.87099 0.84398 14.898 3 Median 0.87099 0.84398 NaN 1 0 Median 1.2831 1.0915 NaN 1 0 Median 0.83027 0.84249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49609000 23891000 25718000 30751000 15758000 14993000 13255000 5136800 8118200 5603100 2996400 2606700 0 0 0 0 0 0 0 0 0 2529 2458 2648 12979;12980;12981 13225;13226;13227;13228;13229;13230;13231;13232;13233;13234 13228 10 APGEQTVPALNLQNAFR ATFVKEITYRASNIKAPGEQTVPALNLQNA GEQTVPALNLQNAFRIIKEVQKRYKTREAE K A P F R I 3 1 2 0 0 2 1 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 17 0 1824.9482 Q9Y5B9 Q9Y5B9 607 623 SUPT16H FACT complex subunit SPT16 yes yes 2 2.2456E-10 101.93 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 2 2 2 2 0.85966 0.83728 20.47 11 Median 0.57545 0.5605 9.2956 2 0 Median 1.3148 1.1426 NaN 1 0 Median 0.77302 0.82308 3.6758 2 2 Median 0.94694 0.81709 6.5949 2 0 Median 0.85422 0.88217 0.0060599 2 0 Median 0.9424 0.80581 5.4171 2 0 Median 52927000 29956000 22971000 18649000 11958000 6691600 586350 173040 413320 13441000 7371500 6069200 745860 372420 373440 18257000 9357000 8900200 1247400 723890 523510 2530 4456 2649 12982;12983;12984;12985;12986;12987;12988;12989;12990;12991;12992 13235;13236;13237;13238;13239;13240;13241 13235 7 APGEVTITVR ______________________________ ______________________________ M A P V R L 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 2 0 0 2 0 0 10 0 1041.5819 Q3KRA6 Q3KRA6 2 11 C2orf76 UPF0538 protein C2orf76 yes yes 2 0.00063896 72.643 By MS/MS 1 1.0451 0.88602 NaN 1 Median NaN NaN NaN 0 0 Median 1.0451 0.88602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4383300 2140700 2242600 0 0 0 4383300 2140700 2242600 0 0 0 0 0 0 0 0 0 0 0 0 2531 3011 2650 12993 13242 13242 1 APGFAQMLK ______________________________ ALHVPKAPGFAQMLKEGAKHFSGLEEAVYR K A P L K E 2 0 0 0 0 1 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 9 0 961.50552 P50990 P50990 8 16 CCT8 T-complex protein 1 subunit theta yes yes 2 0.00079541 97.473 By MS/MS By matching By MS/MS 4 3 1 1.0204 0.90597 13.771 8 Median 0.97341 0.88153 11.432 4 0 Median 1.0702 0.90674 14.308 3 0 Median 1.1459 1.1131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80689000 39179000 41511000 49239000 24680000 24559000 19098000 9151200 9946600 12353000 5347800 7004800 0 0 0 0 0 0 0 0 0 2532 2423 2651 12994;12995;12996;12997;12998;12999;13000;13001 13243;13244;13245;13246;13247;13248;13249 13249 7 APGFGDNR VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM LQVVAVKAPGFGDNRKNQLKDMAIATGGAV K A P N R K 1 1 1 1 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 8 0 832.38277 P10809 P10809 302 309 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0035542 89.142 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1.0664 1.0037 19.104 6 Median 0.96866 0.93685 NaN 1 0 Median 1.2468 1.0774 21.405 3 0 Plateau 0.9501 1.0026 NaN 1 0 Median 1.4922 1.2947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32583000 14627000 17956000 5874900 2930900 2944000 25493000 11083000 14410000 1054300 552330 501980 160780 60751 100030 0 0 0 0 0 0 2533 1947 2652 13002;13003;13004;13005;13006;13007 13250;13251;13252;13253;13254;13255;13256;13257 13254 8 APGFGDNRK VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM QVVAVKAPGFGDNRKNQLKDMAIATGGAVF K A P R K N 1 1 1 1 0 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 9 1 960.47773 P10809 P10809 302 310 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0014038 86.833 By MS/MS By MS/MS By matching 1 2 1 1.0998 1.0571 9.8793 4 Median 0.97347 0.98047 NaN 1 0 Median 1.2743 1.1619 3.2036 2 0 Median 0.89657 0.98377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10038000 4582900 5455300 3800600 1877300 1923300 6064100 2619700 3444300 173570 85856 87711 0 0 0 0 0 0 0 0 0 2534 1947 2653 13008;13009;13010;13011 13258;13259;13260;13261;13262;13263;13264 13263 7 APGFLQPPPLR AGPAERARHQPPQPKAPGFLQPPPLRQPRT PQPKAPGFLQPPPLRQPRTTPPPGAQCEVP K A P L R Q 1 1 0 0 0 1 0 1 0 0 2 0 0 1 4 0 0 0 0 0 0 0 11 0 1191.6764 Q9H074;D6R9H8 Q9H074 50 60 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes no 2 0.00020084 96.492 By matching By MS/MS By matching 1 1 1 0.91109 0.9277 39.757 3 Plateau 1.1358 1.1257 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73081 0.76453 NaN 1 0 Median 0.58546 0.50833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6919300 3441500 3477800 3184900 971740 2213200 0 0 0 3120300 2088700 1031600 614170 381130 233040 0 0 0 0 0 0 2535 3919 2654 13012;13013;13014 13265;13266 13265 2 APGIDDIKTLEEK PHTHCPEVDSDTQPKAPGIDDIKTLEEKLR PKAPGIDDIKTLEEKLRSLFSEHSSSGAQH K A P E K L 1 0 0 2 0 0 2 1 0 2 1 2 0 0 1 0 1 0 0 0 0 0 13 1 1427.7508 F5GWT4;Q9H4A3 F5GWT4 1399 1411 WNK1 Serine/threonine-protein kinase WNK1 yes no 3 0.025809 33.204 By MS/MS 1 0.53498 0.53877 NaN 1 Median 0.53498 0.53877 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2730800 1602700 1128100 2730800 1602700 1128100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2536 1001 2655 13015 13267 13267 1 APGIPSGMETLK HRAPIFMRVPFLEFKAPGIPSGMETLKDTP EFKAPGIPSGMETLKDTPAPRLLKTHLPLA K A P L K D 1 0 0 0 0 0 1 2 0 1 1 1 1 0 2 1 1 0 0 0 0 0 12 0 1199.622 P50225;H3BRY5 P50225 86 97 SULT1A1 Sulfotransferase 1A1;Sulfotransferase yes no 2 0.00047477 77.662 By MS/MS 1 0.76997 0.69715 NaN 1 Median 0.76997 0.69715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65985000 38322000 27663000 65985000 38322000 27663000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2537 2410 2656 13016 13268;13269 13269 2 APGLGAFRR EKMYERMYAALGDPKAPGLGAFRRKFIQTF ALGDPKAPGLGAFRRKFIQTFGKEFDKHFG K A P R R K 2 2 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 1 943.53518 P78527 P78527 3622 3630 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0044976 66.993 By matching By MS/MS By matching 1 1 1 1.1691 1.0022 11.825 3 Median NaN NaN NaN 0 0 Median 1.3948 1.2274 NaN 1 0 Median 0.9081 0.998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1691 1.0022 NaN 1 0 Median 7150600 3350200 3800400 0 0 0 1640200 672330 967850 4417100 2189500 2227500 0 0 0 0 0 0 1093300 488320 604990 2538 2647 2657 13017;13018;13019 13270 13270 1 APGPGLAQGLPQLHSLVLR PLLHYLEVSGCGSLRAPGPGLAQGLPQLHS GLAQGLPQLHSLVLRRNALGPGLSPELGPL R A P L R R 2 1 0 0 0 2 0 3 1 0 5 0 0 0 3 1 0 0 0 1 0 0 19 0 1923.1054 Q8N1G4 Q8N1G4 65 83 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 8.3339E-05 38.417 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.71498 0.67861 40.234 5 Median 0.64875 0.61057 NaN 1 0 Median 0.80821 0.6988 NaN 1 0 Median 0.71498 0.72833 NaN 1 0 Median 0.508 0.43505 62.874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64135000 36983000 27152000 36663000 22294000 14369000 15122000 8044700 7077300 11059000 5953300 5105600 1291100 691840 599260 0 0 0 0 0 0 2539 3359 2658 13020;13021;13022;13023;13024 13271;13272;13273;13274;13275;13276;13277 13273 7 APGQDVTLFR NRTRASDRHGIPAQKAPGQDVTLFRSPDSV IPAQKAPGQDVTLFRSPDSVDRVLSEGSEV K A P F R S 1 1 0 1 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 10 0 1102.5771 A0A1B0GW36;Q9H0J4 A0A1B0GW36 1147 1156 QRICH2 Glutamine-rich protein 2 yes no 2 0.011836 42.109 By MS/MS By matching By matching By matching 1 1 2 3 1.0344 0.88316 21.199 7 Median 1.0344 1.007 NaN 1 0 Median 1.1456 0.92656 NaN 1 0 Median 0.93787 0.94457 13.424 2 0 Median 1.0485 0.82744 25.785 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16081000 8255100 7825600 6684500 3023600 3660900 1299900 575070 724840 3961800 2186400 1775400 4134500 2470100 1664400 0 0 0 0 0 0 2540 327 2659 13025;13026;13027;13028;13029;13030;13031 13278;13279 13278 2 APGQHGGFVVTVK GPKQPGAAAAPAGGKAPGQHGGFVVTVKQE GKAPGQHGGFVVTVKQERGEGPRAGEKGSH K A P V K Q 1 0 0 0 0 1 0 3 1 0 0 1 0 1 1 0 1 0 0 3 0 0 13 0 1295.6986 Q9P0W2;B5MDG7;F8WES5;C9JQA7;C9K049;C9J8X5 Q9P0W2 19 31 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 3 0.0026 36.445 By MS/MS By MS/MS 1 1 0.87417 0.7888 36.002 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63536 0.61151 NaN 1 0 Median 1.2027 1.0175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14865000 8627000 6238400 0 0 0 0 0 0 12322000 7631400 4690300 2543700 995600 1548100 0 0 0 0 0 0 2541 4210 2660 13032;13033 13280;13281 13280 2 APGQLALFSVSDK ______________________________ ______________________________ M A P D K T 2 0 0 1 0 1 0 1 0 0 2 1 0 1 1 2 0 0 0 1 0 0 13 0 1331.7085 P31939;F8WEF0 P31939 2 14 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00013848 133.89 By MS/MS By matching By matching 1 1 1 1.05 0.87678 15.016 3 Median 0.92236 0.8596 NaN 1 0 Median 1.05 0.87678 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2917 1.1254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47579000 24374000 23205000 27105000 14380000 12724000 20335000 9921400 10413000 0 0 0 139820 72509 67308 0 0 0 0 0 0 2542 2207 2661 13034;13035;13036 13282;13283;13284 13283 3 APGQLALFSVSDKTGLVEFAR ______________________________ LFSVSDKTGLVEFARNLTALGLNLVASGGT M A P A R N 3 1 0 1 0 1 1 2 0 0 3 1 0 2 1 2 1 0 0 2 0 0 21 1 2205.1794 P31939;F8WEF0 P31939 2 22 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 8.1445E-05 36.805 By MS/MS 1 0.84692 0.8506 NaN 1 Median 0.84692 0.8506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5768300 2920000 2848200 5768300 2920000 2848200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2543 2207 2662 13037 13285 13285 1 APGSAGHYELPWVEK EVEAQDSDPAPAFSKAPGSAGHYELPWVEK APGSAGHYELPWVEKYRPVKLNEIVGNEDT K A P E K Y 2 0 0 0 0 0 2 2 1 0 1 1 0 0 2 1 0 1 1 1 0 0 15 0 1639.7995 P35250;H7C5P1;H7C5Q7;F8WC37;H7C5A0;H7C5G4 P35250 27 41 RFC2 Replication factor C subunit 2 yes no 3 0.062422 17.917 By MS/MS 1 0.81944 0.86911 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81944 0.86911 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4778900 2627600 2151300 0 0 0 0 0 0 4778900 2627600 2151300 0 0 0 0 0 0 0 0 0 2544 2238 2663 13038 13286 13286 1 APGSGLALLPLK LERLTYHQLLERCVRAPGSGLALLPLKITF CVRAPGSGLALLPLKITFRSMGGAVSAAEL R A P L K I 2 0 0 0 0 0 0 2 0 0 4 1 0 0 2 1 0 0 0 0 0 0 12 0 1135.6965 P58107;A0A075B730 P58107 221 232 EPPK1 Epiplakin yes no 2 0.00052642 76.17 By MS/MS By matching By matching By matching By matching 3 1 1 1 4 0.95521 0.85356 10.925 10 Median 0.93323 0.93625 14.987 3 0 Median 0.96333 0.84015 NaN 1 0 Median 0.83351 0.91469 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97977 1.0206 NaN 1 0 Median 0.95537 0.8156 6.7502 4 0 Median 32232000 15666000 16567000 24974000 12036000 12938000 4538900 2253000 2285900 471130 280380 190750 0 0 0 853100 398500 454600 1395500 697630 697870 2545 2520 2664 13039;13040;13041;13042;13043;13044;13045;13046;13047;13048 13287;13288;13289;13290 13288 4 APGTNVAMASNQAVR ALFKCKFEEAQSILKAPGTNVAMASNQAVR APGTNVAMASNQAVRIVKEPTSHDNKDICK K A P V R I 4 1 2 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 2 0 0 15 0 1485.7358 P49792 P49792 1307 1321 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 3.5941E-21 193.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 2 1 2 1.0673 0.9641 22.077 12 Median 1.6011 1.6068 NaN 1 0 Median 1.2829 1.0583 6.0836 2 0 Median 0.85603 0.91235 26.76 4 1 Median 1.0061 0.88142 14.2 2 0 Median 0.96471 1.0009 NaN 1 0 Median 1.0881 0.8939 9.1724 2 0 Median 136980000 67163000 69814000 4583800 1422500 3161300 16983000 7767100 9215800 87427000 44370000 43056000 14359000 7133800 7225600 6878400 3106200 3772200 6745900 3363400 3382500 2546 2401 2665 13049;13050;13051;13052;13053;13054;13055;13056;13057;13058;13059;13060 13291;13292;13293;13294;13295;13296;13297;13298;13299;13300;13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312 13302 22 APGTPHSHTKPYVR SGPRKGREVYRHFGKAPGTPHSHTKPYVRS KAPGTPHSHTKPYVRSKGRKFERARGRRAS K A P V R S 1 1 0 0 0 0 0 1 2 0 0 1 0 0 3 1 2 0 1 1 0 0 14 1 1546.8005 J3QQ67;Q07020;H0YHA7;F8VYV2;F8VUA6 J3QQ67 157 170 RPL18 60S ribosomal protein L18 yes no 3 0.00048682 48.14 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 4 2 0.71587 0.73414 7.5557 11 Median 0.68677 0.69767 4.118 2 0 Median 0.77121 0.72276 NaN 1 0 Median 0.71587 0.73414 NaN 1 0 Median 0.7463 0.66063 NaN 1 0 Median 0.6886 0.75169 8.2808 4 0 Median 0.84233 0.7706 4.3803 2 0 Median 10305000 6007200 4297800 1384400 836200 548150 1235700 693920 541750 1470000 875090 594900 183730 105330 78401 5444900 3180000 2264900 586380 316720 269660 2547 1342 2666 13061;13062;13063;13064;13065;13066;13067;13068;13069;13070;13071 13313;13314;13315;13316;13317;13318;13319;13320;13321;13322 13317 10 APHLAYLR DSSIVVAGGMENMSKAPHLAYLRTGVKIGE GMENMSKAPHLAYLRTGVKIGEMPLTDSIL K A P L R T 2 1 0 0 0 0 0 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 8 0 939.52904 Q9BWD1 Q9BWD1 125 132 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 0.0023065 111.69 By MS/MS By matching By matching 1 1 1 0.93337 0.95716 9.0534 3 Plateau 0.96322 0.96301 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78347 0.85143 NaN 1 0 Median 0.93337 0.80716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25230000 12898000 12332000 22180000 11147000 11034000 0 0 0 2515100 1440200 1074900 534410 310990 223420 0 0 0 0 0 0 2548 3868 2667 13072;13073;13074 13323;13324 13324 2 APHLQLIEGKK VQDGDGRREVRSPTKAPHLQLIEGKKNSLR SPTKAPHLQLIEGKKNSLRVEGDNIYVRHS K A P K K N 1 0 0 0 0 1 1 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 11 1 1232.7241 O43491;H0Y5B0 O43491 602 612 EPB41L2 Band 4.1-like protein 2 yes no 3 0.00063517 52.247 By matching By MS/MS By MS/MS 1 1 1 1.0703 1.0095 38.514 3 Median 1.0703 1.1329 NaN 1 0 Median 1.0787 1.0095 NaN 1 0 Median 0.48329 0.55296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5611000 2758000 2853000 1646000 648780 997190 1898500 964450 934090 2066500 1144800 921750 0 0 0 0 0 0 0 0 0 2549 1573 2668 13075;13076;13077 13325;13326;13327 13327 2 APIDTSDVEEK ESIANQRITAFKMEKAPIDTSDVEEKAEEI KMEKAPIDTSDVEEKAEEIIAEAEPPSEVV K A P E K A 1 0 0 2 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1202.5667 D6RIY6;Q06265 D6RIY6 285 295 EXOSC9 Exosome complex component RRP45 yes no 2 0.010831 61.65 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2550 828 2669 13078 13328 13328 1 APIIAVTR KSGRSAHQVARYRPRAPIIAVTRNPQTARQ VARYRPRAPIIAVTRNPQTARQAHLYRGIF R A P T R N 2 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 8 0 839.52289 H3BTN5;P14618;B4DNK4 P14618 448 455 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00042532 154.01 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 11 12 1 3 1 2 1.0396 0.91638 39.15 29 Median 0.98151 0.94147 63.259 10 2 Median 1.042 0.88563 11.189 12 1 Median 1.044 1.0401 NaN 1 0 Median 1.0694 0.91638 25.089 3 0 Median 1.3872 1.3975 NaN 1 0 Median 1.1814 0.99084 15.534 2 0 Median 1179900000 574660000 605240000 395720000 206630000 189090000 752450000 353220000 399230000 16331000 7763200 8568200 9042100 4296900 4745200 3071200 1280800 1790400 3291300 1477600 1813600 2551 2005;1237 2670 13079;13080;13081;13082;13083;13084;13085;13086;13087;13088;13089;13090;13091;13092;13093;13094;13095;13096;13097;13098;13099;13100;13101;13102;13103;13104;13105;13106;13107;13108 13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349;13350;13351;13352;13353;13354 13331 26 APIISGVTK SEEAVREVHRLIEGKAPIISGVTKAISSPT RLIEGKAPIISGVTKAISSPTVSRLTDTTK K A P T K A 1 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 1 0 0 1 0 0 9 0 884.53312 O94811 O94811 148 156 TPPP Tubulin polymerization-promoting protein yes yes 2 0.00082366 95.909 By matching By MS/MS By MS/MS 1 1 1 0.98691 0.81772 15.261 3 Median 1.0893 1.0526 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8531 0.7997 NaN 1 0 Median 0.98691 0.81772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15859000 8194400 7664800 1553500 765460 787990 0 0 0 10457000 5550800 4905900 3849100 1878200 1970900 0 0 0 0 0 0 2552 1726 2671 13109;13110;13111 13355;13356;13357 13356 3 APILIATDVASR QQERDWVLNEFKHGKAPILIATDVASRGLD HGKAPILIATDVASRGLDVEDVKFVINYDY K A P S R G 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1225.703 A0A1X7SBZ2;A0A1W2PQ51;Q92841;A0A0U1RQJ0;J3KTA4;P17844 J3KTA4 392 403 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 3.0793E-06 127.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 12 8 7 8 1.0481 0.94726 17.832 44 Median 1.1977 1.1496 12.346 4 0 Median 1.1469 0.99011 10.445 5 0 Median 0.87405 0.85336 15.477 12 2 Median 1.058 0.92279 29.884 8 0 Median 0.96896 0.96885 11.887 7 0 Median 1.1374 0.87997 8.5225 8 0 Median 2402100000 1223100000 1179100000 121080000 55830000 65248000 55556000 25838000 29718000 1486900000 778660000 708220000 98109000 46246000 51862000 491230000 245360000 245870000 149300000 71136000 78159000 2553 1334;343 2672 13112;13113;13114;13115;13116;13117;13118;13119;13120;13121;13122;13123;13124;13125;13126;13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139;13140;13141;13142;13143;13144;13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155 13358;13359;13360;13361;13362;13363;13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380;13381;13382;13383;13384;13385;13386;13387;13388;13389;13390;13391;13392;13393;13394;13395;13396;13397;13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423 13358 65 APIPQKQEILVEPEPLFGAPK ASVSTVRPHTEEEVRAPIPQKQEILVEPEP QEILVEPEPLFGAPKRRRPARSIFDGFRDF R A P P K R 2 0 0 0 0 2 3 1 0 2 2 2 0 1 5 0 0 0 0 1 0 0 21 1 2300.278 O94888;C9JD50 O94888 79 99 UBXN7 UBX domain-containing protein 7 yes no 3 0.035662 20.446 By MS/MS 1 0.44893 0.42355 NaN 1 Median 0.44893 0.42355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5698500 4002700 1695800 5698500 4002700 1695800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2554 1733 2673 13156 13424 13424 1 APIQWEER PEISAAVMKIFDAAKAPIQWEERNVTAIQG KIFDAAKAPIQWEERNVTAIQGPGGKWMIP K A P E R N 1 1 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 8 0 1027.5087 P50213;H0YL72;H0YLI6;H0YKD0;H0YM64 P50213 59 66 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.0023142 126.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0695 0.9714 3.6764 4 Median 1.0444 0.97621 NaN 1 0 Median 1.0951 0.91059 NaN 1 0 Median 1.0051 0.98982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1687 0.96661 NaN 1 0 Median 35567000 17699000 17868000 9599800 5810600 3789200 20466000 9322700 11143000 2941700 1479100 1462600 0 0 0 0 0 0 2559800 1086900 1472900 2555 2409 2674 13157;13158;13159;13160;13161 13425;13426;13427;13428;13429;13430;13431 13425 7 APIRPDIVNFVHTNLR GESSGKNVTLPAVFKAPIRPDIVNFVHTNL PIRPDIVNFVHTNLRKNNRQPYAVSELAGH K A P L R K 1 2 2 1 0 0 0 0 1 2 1 0 0 1 2 0 1 0 0 2 0 0 16 1 1861.0323 P36578;H3BTP7;H3BU31 P36578 30 45 RPL4 60S ribosomal protein L4 yes no 2;3;4 2.5299E-05 75.463 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 2 2 4 6 0.91351 0.87824 34.06 21 Median 0.80531 0.81324 15.332 3 0 Median 1.0115 0.92822 15.665 4 0 Median 0.86565 0.93726 12.579 2 0 Median 0.97596 0.91034 2.0531 2 0 Median 0.83837 0.93566 40.029 4 0 Median 0.97324 0.84764 48.421 6 0 Median 193220000 99310000 93912000 55974000 29686000 26288000 33353000 17247000 16106000 34676000 17657000 17019000 17889000 8534200 9354300 31391000 16046000 15346000 19940000 10140000 9799900 2556 2260 2675 13162;13163;13164;13165;13166;13167;13168;13169;13170;13171;13172;13173;13174;13175;13176;13177;13178;13179;13180;13181;13182 13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443 13432 12 APIRPDIVNFVHTNLRK GESSGKNVTLPAVFKAPIRPDIVNFVHTNL IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ K A P R K N 1 2 2 1 0 0 0 0 1 2 1 1 0 1 2 0 1 0 0 2 0 0 17 2 1989.1272 P36578;H3BTP7;H3BU31 P36578 30 46 RPL4 60S ribosomal protein L4 yes no 3;4 1.8933E-07 87.388 By MS/MS By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 4 2 0.86596 0.9248 19.618 11 Median 0.84827 0.94408 2.9179 2 0 Median 1.0492 1.2583 NaN 1 0 Median 1.1392 1.3332 NaN 1 0 Median 1.0616 1.131 NaN 1 0 Median 0.83156 0.95703 12.583 4 0 Linear 0.91471 0.79357 2.1078 2 0 Median 133980000 69540000 64439000 40478000 19959000 20519000 409220 215300 193920 2666300 1005200 1661100 4538600 2208400 2330200 78625000 42398000 36227000 7262300 3754100 3508200 2557 2260 2676 13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193 13444;13445;13446;13447;13448;13449;13450;13451;13452 13451 9 APIVTVGVNNDPADVR NKRTQIVTEIISEIRAPIVTVGVNNDPADV PIVTVGVNNDPADVRKKELKMAEIKVKLIE R A P V R K 2 1 2 2 0 0 0 1 0 1 0 0 0 0 2 0 1 0 0 4 0 0 16 0 1635.858 Q9BPX3;H0Y9Z8 Q9BPX3 471 486 NCAPG Condensin complex subunit 3 yes no 2 6.841E-11 124.12 By MS/MS By MS/MS By MS/MS 1 2 1 0.62801 0.64938 6.6355 4 Median 0.61913 0.59761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62757 0.68012 4.2054 2 0 Median 0.75271 0.63874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24862000 14450000 10413000 7575200 4334200 3241000 0 0 0 10938000 6681900 4256100 6349000 3433400 2915700 0 0 0 0 0 0 2558 3778 2677 13194;13195;13196;13197 13453;13454;13455;13456;13457;13458;13459 13458 7 APKPDGPGGGPGGSHMGGNYGDDR ENMNFSWRNECNQCKAPKPDGPGGGPGGSH GPGGSHMGGNYGDDRRGGRGGYDRGGYRGR K A P D R R 1 1 1 3 0 0 0 9 1 0 0 1 1 0 4 1 0 0 1 0 0 0 24 1 2251.9665 H3BPE7;P35637 H3BPE7 450 473 FUS RNA-binding protein FUS yes no 3;4 6.5975E-19 84.946 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 8 8 5 2 0.60486 0.58728 26.286 32 Median 0.43368 0.39294 12.134 3 0 Plateau 0.59236 0.54687 15.159 6 0 Median 0.75153 0.84333 25.705 8 0 Median 0.65895 0.61123 9.9585 8 1 Median 0.48889 0.50505 28.454 5 0 Median 0.75937 0.67503 19.486 2 1 Median 260700000 163400000 97300000 45828000 30906000 14923000 25610000 15437000 10174000 90511000 57419000 33093000 60044000 34618000 25426000 37387000 24289000 13098000 1322400 734590 587770 2559 1221 2678 13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229 13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490;13491;13492;13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504 13500 45 APLEVAQEH YSKKPTPDKCAADVKAPLEVAQEH______ CAADVKAPLEVAQEH_______________ K A P E H - 2 0 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 992.49271 O94903 O94903 267 275 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 2 0.0096066 65.252 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1296400 0 0 0 0 0 1296400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2560 1734 2679 13230 13505 13505 1 APLKPYPVSPSDK SVIESHTEFIFTTIKAPLKPYPVSPSDKVL IKAPLKPYPVSPSDKVLIQEKTQLKGSELE K A P D K V 1 0 0 1 0 0 0 0 0 0 1 2 0 0 4 2 0 0 1 1 0 0 13 1 1397.7555 P41252;A0A0A0MSX9;J3KR24;Q5TCC6 P41252 1039 1051 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 3.6117E-06 103.08 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.59591 0.59631 17.398 6 Median 0.46364 0.48829 29.416 2 1 Median 0.67444 0.62457 1.684 2 0 Median 0.48248 0.55196 NaN 1 0 Median 0.62091 0.59146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39077000 22698000 16379000 9204900 5342900 3862100 26693000 15310000 11383000 1667400 1091200 576130 1511700 953780 557960 0 0 0 0 0 0 2561 2302 2680 13231;13232;13233;13234;13235;13236 13506;13507;13508;13509;13510;13511;13512;13513 13509 8 APLLYEQYIGQYLTQEELSAR IQGGEYFSDEQMRFRAPLLYEQYIGQYLTQ QYIGQYLTQEELSARTPTHQPPKPGSPGRP R A P A R T 2 1 0 0 0 3 3 1 0 1 4 0 0 0 1 1 1 0 3 0 0 0 21 0 2484.2537 Q96F63 Q96F63 181 201 CCDC97 Coiled-coil domain-containing protein 97 yes yes 3 0.0003315 28.505 By MS/MS 1 0.65535 0.65224 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65535 0.65224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1319200 823990 495220 0 0 0 0 0 0 1319200 823990 495220 0 0 0 0 0 0 0 0 0 2562 3647 2681 13237 13514;13515 13514 2 APLNVQFNSPLPGDAVK GKPTHFTVYTKGAGKAPLNVQFNSPLPGDA LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK K A P V K D 2 0 2 1 0 1 0 1 0 0 2 1 0 1 3 1 0 0 0 2 0 0 17 0 1765.9363 O75369;E7EN95 O75369 878 894 FLNB Filamin-B yes no 2 7.4788E-12 135.02 By MS/MS By MS/MS By matching 2 1 1 0.69399 0.67015 7.8302 4 Median 0.68024 0.67015 1.7362 2 0 Median 0.70382 0.61908 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80555 0.74787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42075000 24860000 17216000 33001000 19688000 13313000 8478500 4817900 3660600 0 0 0 596020 354180 241830 0 0 0 0 0 0 2563 1664 2682 13238;13239;13240;13241 13516;13517;13518;13519;13520;13521;13522 13518 7 APLNVTNTAGTSLPSVDLLQK ELSHASLIANQSPFRAPLNVTNTAGTSLPS NTAGTSLPSVDLLQKLRLTPQHDQIQTQPL R A P Q K L 2 0 2 1 0 1 0 1 0 0 4 1 0 0 2 2 3 0 0 2 0 0 21 0 2138.1583 Q9NPI6 Q9NPI6 377 397 DCP1A mRNA-decapping enzyme 1A yes yes 2 0.037092 20.381 By MS/MS 1 0.50799 0.53933 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50799 0.53933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2412900 1658900 754040 0 0 0 0 0 0 2412900 1658900 754040 0 0 0 0 0 0 0 0 0 2564 4054 2683 13242 13523;13524 13524 2 APLPDLYPFGTMR VTRPEPQALPSPAIRAPLPDLYPFGTMRGG IRAPLPDLYPFGTMRGGGFGDRDRDRDRGG R A P M R G 1 1 0 1 0 0 0 1 0 0 2 0 1 1 3 0 1 0 1 0 0 0 13 0 1476.7435 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 69 81 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 7.918E-07 147.95 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 2 0.55651 0.56286 17.953 7 Median 0.69051 0.66313 NaN 1 0 Median 0.40506 0.39161 NaN 1 0 Median 0.55535 0.55834 1.1414 2 0 Median 0.75746 0.65253 NaN 1 0 Median 0.54117 0.56466 11.536 2 0 Median NaN NaN NaN 0 0 Median 115260000 72479000 42784000 4519200 2508500 2010700 1362800 995870 366900 103340000 65436000 37907000 1388400 747690 640730 4649400 2790700 1858700 0 0 0 2565 343 2684;2685 13243;13244;13245;13246;13247;13248;13249 13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538;13539;13540;13541;13542 13531 162 18 APLPLGHIK SSHQLNEFLAQTLQRAPLPLGHIKRMQEVY AQTLQRAPLPLGHIKRMQEVYNFNAINNSE R A P I K R 1 0 0 0 0 0 0 1 1 1 2 1 0 0 2 0 0 0 0 0 0 0 9 0 944.58074 P09960 P09960 511 519 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.0065554 54.205 By MS/MS By MS/MS 1 1 0.77454 0.69194 1.7706 2 Median 0.73914 0.70066 NaN 1 0 Median 0.81164 0.68333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15407000 8612300 6795200 8023600 4409400 3614200 7383900 4202900 3181000 0 0 0 0 0 0 0 0 0 0 0 0 2566 1924 2686 13250;13251 13543;13544;13545;13546 13543 4 APLQGDHNHLFIR SMSLHLGNEVFDVYKAPLQGDHNHLFIRQG YKAPLQGDHNHLFIRQGTGLQGQAVFKTKL K A P I R Q 1 1 1 1 0 1 0 1 2 1 2 0 0 1 1 0 0 0 0 0 0 0 13 0 1516.7899 Q8WVC0 Q8WVC0 462 474 LEO1 RNA polymerase-associated protein LEO1 yes yes 3 1.9371E-07 103.91 By MS/MS By MS/MS 2 2 0.93365 0.91195 6.6813 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86115 0.91195 1.7541 2 0 Median 1.1018 0.9349 11.166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24751000 11623000 13128000 0 0 0 0 0 0 14266000 6879800 7385900 10485000 4742700 5742200 0 0 0 0 0 0 2567 3500 2687 13252;13253;13254;13255 13547;13548;13549;13550 13547 4 APLQVAVLGPTGVAEPVEVR RVPQTFTVDCSQAGRAPLQVAVLGPTGVAE AVLGPTGVAEPVEVRDNGDGTHTVHYTPAT R A P V R D 3 1 0 0 0 1 2 2 0 0 2 0 0 0 3 0 1 0 0 5 0 0 20 0 2001.1259 Q14315 Q14315 1475 1494 FLNC Filamin-C yes yes 2;3 5.2943E-19 151.44 By MS/MS By MS/MS By MS/MS By matching 4 2 3 2 0.75805 0.73708 15.397 11 Median 0.78681 0.76145 4.5898 4 0 Median 0.7093 0.57954 14.681 2 0 Median 0.80281 0.89151 11.697 3 1 Plateau 0.73868 0.64261 4.0448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54479000 30197000 24282000 32168000 17296000 14872000 18183000 10495000 7687300 3561900 2089100 1472800 566010 316050 249960 0 0 0 0 0 0 2568 2871 2688 13256;13257;13258;13259;13260;13261;13262;13263;13264;13265;13266 13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561;13562;13563;13564;13565 13556 15 APLVPPGSPVVNALFR QTFHPVLSLLSFLFKAPLVPPGSPVVNALF PLVPPGSPVVNALFRQRSCIENILRACVGL K A P F R Q 2 1 1 0 0 0 0 1 0 0 2 0 0 1 4 1 0 0 0 3 0 0 16 0 1632.9352 Q9NPH2;J3QS51 Q9NPH2 466 481 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2 5.6725E-05 78.653 By MS/MS By MS/MS By MS/MS 1 2 1 0.39164 0.37019 44.345 4 Median 0.30516 0.28591 NaN 1 0 Median 0.66158 0.57918 37.581 2 1 Median 0.29247 0.30864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72533000 54337000 18197000 67273000 51197000 16075000 4206900 2298900 1908000 1053900 840550 213300 0 0 0 0 0 0 0 0 0 2569 4052 2689 13267;13268;13269;13270 13566;13567;13568;13569;13570;13571 13568 6 APMAAQGMVETR SNQQHGDKMMSFDTRAPMAAQGMVETRVFL DTRAPMAAQGMVETRVFLQYLPAIRALWAD R A P T R V 3 1 0 0 0 1 1 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 12 0 1260.5955 Q14344 Q14344 129 140 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 2 0.0029394 72.643 By MS/MS 1 0.90377 0.89865 NaN 1 Median 0.90377 0.89865 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4048000 2174800 1873200 4048000 2174800 1873200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2570 2875 2690 13271 13572 13572 1 APMVNPTLGVHEADLLK GAKEVLASDLVVKVRAPMVNPTLGVHEADL MVNPTLGVHEADLLKTSGTLISFIYPAQNP R A P L K T 2 0 1 1 0 0 1 1 1 0 3 1 1 0 2 0 1 0 0 2 0 0 17 0 1803.9553 Q13423;A0A590UK15;A0A590UJM2;A0A590UK29;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7 Q13423 130 146 NNT NAD(P) transhydrogenase, mitochondrial yes no 2;3 1.2128E-14 164.13 By MS/MS By MS/MS By matching 4 3 1 0.66654 0.61614 21.729 8 Median 0.56546 0.55778 6.1659 4 1 Median 1.0644 0.95251 22.677 3 0 Plateau 0.69753 0.75527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151370000 85545000 65826000 92320000 56994000 35326000 55510000 26919000 28591000 3541700 1632300 1909400 0 0 0 0 0 0 0 0 0 2571 2814 2691 13272;13273;13274;13275;13276;13277;13278;13279 13573;13574;13575;13576;13577;13578 13576 6 APNDFNLR YMNNTVNTMRLWSARAPNDFNLRDFNVGDY MRLWSARAPNDFNLRDFNVGDYIQAVLDRN R A P L R D 1 1 2 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 8 0 945.46683 P06737;E9PK47 P06737 249 256 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.0061489 83.614 By MS/MS 2 0.73867 0.72636 17.399 2 Median 0.73867 0.72636 17.399 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4718500 2675500 2043000 4718500 2675500 2043000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2572 1874 2692 13280;13281 13579;13580 13579 2 APNISMPDVDLNLK KLKGPKFKMPDMHFKAPNISMPDVDLNLKG KAPNISMPDVDLNLKGPKIKGDVDVSVPEV K A P L K G 1 0 2 2 0 0 0 0 0 1 2 1 1 0 2 1 0 0 0 1 0 0 14 0 1525.781 Q09666 Q09666 2450 2463 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0023891 43.282 By MS/MS By MS/MS By matching 1 1 1 0.92004 1.0451 11.074 3 Plateau NaN NaN NaN 0 0 Median 1.2054 1.0508 NaN 1 0 Median 0.87951 0.96519 NaN 1 0 Median 0.92004 0.84362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5969400 1753400 4216000 0 0 0 3848000 693830 3154100 1764800 853890 910920 356620 205660 150960 0 0 0 0 0 0 2573 2749 2693 13282;13283;13284 13581;13582 13582 2 APNISMPDVDLNLKGPK KLKGPKFKMPDMHFKAPNISMPDVDLNLKG NISMPDVDLNLKGPKIKGDVDVSVPEVEGK K A P P K I 1 0 2 2 0 0 0 1 0 1 2 2 1 0 3 1 0 0 0 1 0 0 17 1 1807.9502 Q09666 Q09666 2450 2466 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00014944 42.647 By MS/MS By MS/MS 1 3 0.70128 0.79467 17.69 4 Median 0.65013 0.70771 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.72732 0.82397 17.279 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61547000 35249000 26298000 26884000 16202000 10681000 0 0 0 34664000 19047000 15617000 0 0 0 0 0 0 0 0 0 2574 2749 2694;2695 13285;13286;13287;13288 13583;13584;13585;13586;13587;13588 13587 1429 6 APNTPDILEIEFK QAPPGLYTKTQDPAKAPNTPDILEIEFKKG AKAPNTPDILEIEFKKGVPVKVTNVKDGTT K A P F K K 1 0 1 1 0 0 2 0 0 2 1 1 0 1 2 0 1 0 0 0 0 0 13 0 1485.7715 P00966 P00966 216 228 ASS1 Argininosuccinate synthase yes yes 2 0.014225 50.292 By MS/MS 1 0.47203 0.40422 NaN 1 Median NaN NaN NaN 0 0 Median 0.47203 0.40422 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4814800 3167100 1647700 0 0 0 4814800 3167100 1647700 0 0 0 0 0 0 0 0 0 0 0 0 2575 1828 2696 13289 13589 13589 1 APPAPLAASEVTNSNSAER GGRKDRASLQYRGLKAPPAPLAASEVTNSN PLAASEVTNSNSAERRKPHSWWGARRPAGP K A P E R R 5 1 2 0 0 0 2 0 0 0 1 0 0 0 3 3 1 0 0 1 0 0 19 0 1880.9228 Q9Y2U8 Q9Y2U8 172 190 LEMD3 Inner nuclear membrane protein Man1 yes yes 2;3 7.5212E-20 157.52 By MS/MS By MS/MS 2 2 0.59451 0.56525 12 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47782 0.50726 4.5558 2 0 Median 0.72951 0.62041 2.4175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28897000 18519000 10378000 0 0 0 0 0 0 22271000 14692000 7579900 6625900 3827700 2798100 0 0 0 0 0 0 2576 4392 2697 13290;13291;13292;13293 13590;13591;13592;13593;13594;13595 13592 6 APPCEYKDWLTK TMSQEEKAAYLSDPRAPPCEYKDWLTKMSG DPRAPPCEYKDWLTKMSGKHDVGAYMLMYK R A P T K M 1 0 0 1 1 0 1 0 0 0 1 2 0 0 2 0 1 1 1 0 0 0 12 1 1506.7177 P78527 P78527 3834 3845 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00027079 60.157 By MS/MS By MS/MS By matching 3 2 1 1.1468 1.1289 24.866 6 Median NaN NaN NaN 0 0 Median 1.4602 1.2367 16.15 3 0 Median 0.70386 0.79782 1.129 2 0 Median 1.1716 1.1902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40410000 21204000 19206000 0 0 0 10595000 4764200 5830800 28846000 15955000 12891000 968820 484930 483890 0 0 0 0 0 0 2577 2647 2698 13294;13295;13296;13297;13298;13299 13596;13597;13598;13599;13600;13601;13602 13601 7 APPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIK PEPEPEPEEEPPRPRAPPGAPGPGPGSGAP PGDGAIEDPELEAIKARVREMEEEAEKLKE R A P I K A 5 0 0 3 0 1 9 10 0 2 2 1 0 0 9 2 0 0 0 1 0 0 45 0 4304.9721 Q86U42 Q86U42 79 123 PABPN1 Polyadenylate-binding protein 2 yes yes 4 0.013936 20.016 By MS/MS 1 0.17564 0.18633 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17564 0.18633 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4757300 4403700 353610 0 0 0 0 0 0 4757300 4403700 353610 0 0 0 0 0 0 0 0 0 2578 3270 2699 13300 13603 13603 1 APPGGAEAGEPTTLLQR AEDEPDAKSPKTGGRAPPGGAEAGEPTTLL PGGAEAGEPTTLLQRLRGTISKAVQNKVEG R A P Q R L 3 1 0 0 0 1 2 3 0 0 2 0 0 0 3 0 2 0 0 0 0 0 17 0 1663.8529 P48382;F8W689;A0A0A0MSQ2;F6UE82;F6S3S0;A0A0A0MT34;A0A0A0MSM9;F6X9D6;F6R6G4;F8WDU3;F8WFE4;F2Z2G0 P48382 17 33 RFX5 DNA-binding protein RFX5 yes no 2 1.5383E-07 95.401 By MS/MS By matching 1 1 0.90126 0.83573 39.136 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0836 1.1022 NaN 1 0 Median 0.74962 0.6337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12835000 5136300 7698600 0 0 0 0 0 0 12632000 5055300 7576700 202950 80993 121960 0 0 0 0 0 0 2579 2360 2700 13301;13302 13604;13605 13604 2 APPGPAGLSGGESLLVK LELNGAVEPSEGAPRAPPGPAGLSGGESLL PGPAGLSGGESLLVKQIEEQIKRNAAGKDG R A P V K Q 2 0 0 0 0 0 1 4 0 0 3 1 0 0 3 2 0 0 0 1 0 0 17 0 1548.8512 F5GYK2;Q9NRL3;M0R0P4;R4GN16 F5GYK2 103 119 STRN4 Striatin-4 yes no 2 2.2288E-05 68.44 By MS/MS By matching 1 1 0.54248 0.50243 6.9582 2 Median 0.50288 0.47831 NaN 1 0 Median 0.58519 0.52777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815500 2927500 1887900 4185600 2565500 1620100 629910 362070 267830 0 0 0 0 0 0 0 0 0 0 0 0 2580 1011 2701 13303;13304 13606 13606 1 APPHELTEEEK EEEKTLKKDEENDSKAPPHELTEEEKQQIL NDSKAPPHELTEEEKQQILHSEEFLSFFDH K A P E K Q 1 0 0 0 0 0 4 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 11 0 1278.6092 Q13409 Q13409 203 213 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2;3 0.0076399 37.191 By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 0.8574 0.80089 7.0024 7 Median 0.76912 0.78147 7.4291 2 0 Median 0.93229 0.83669 6.1844 2 0 Median 0.72807 0.77377 NaN 1 0 Median 0.93116 0.8095 11.714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8603300 4699600 3903700 1007300 579480 427790 1987700 920280 1067400 4068600 2415800 1652800 1539700 784040 755650 0 0 0 0 0 0 2581 2811 2702 13305;13306;13307;13308;13309;13310;13311 13607;13608;13609;13610;13611;13612;13613;13614 13613 8 APPLVENEEAEPGR ______________________________ KAPPLVENEEAEPGRGGLGVGEPGPLGGGG K A P G R G 2 1 1 0 0 0 4 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 14 0 1506.7314 O14908;K7ELJ2 O14908 11 24 GIPC1 PDZ domain-containing protein GIPC1 yes no 2 6.525E-08 101.95 By MS/MS By MS/MS By MS/MS 1 2 1 0.69335 0.60127 13.336 3 Median NaN NaN NaN 0 0 Median 0.69335 0.60127 NaN 1 1 Median 0.72666 0.71959 NaN 1 0 Median 0.64715 0.55453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14089000 8948600 5140800 0 0 0 4116400 2495000 1621400 5666500 3646400 2020200 4306500 2807300 1499200 0 0 0 0 0 0 2582 1502 2703 13312;13313;13314;13315 13615;13616;13617;13618 13617 4 APPNATLEHFYLTSGK PLAALLNIKEKTRLRAPPNATLEHFYLTSG PPNATLEHFYLTSGKQPKQVEVELLSRQSG R A P G K Q 2 0 1 0 0 0 1 1 1 0 2 1 0 1 2 1 2 0 1 0 0 0 16 0 1744.8784 Q5SZE2;Q5SZE3;H0YKH6;Q5SZE4;Q5SZE1;H0YNU7;Q96G23 Q5SZE2 78 93 CERS2 Ceramide synthase 2 yes no 2;3 3.4417E-10 112.43 By MS/MS By MS/MS 3 4 1.0199 0.96951 8.0461 6 Median 1.0199 1.0233 0.46738 2 0 Median 1.0425 0.90977 7.9372 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84813000 40965000 43848000 55946000 26729000 29217000 28867000 14235000 14632000 0 0 0 0 0 0 0 0 0 0 0 0 2583 1192 2704 13316;13317;13318;13319;13320;13321;13322 13619;13620;13621;13622;13623;13624 13621 6 APPPGLPAETIK VFEHVDQDLRTYLDKAPPPGLPAETIKDLM LDKAPPPGLPAETIKDLMRQFLRGLDFLHA K A P I K D 2 0 0 0 0 0 1 1 0 1 1 1 0 0 4 0 1 0 0 0 0 0 12 0 1189.6707 P11802;F8VYH9;F8VTV8;F8VWX7;F8VZZ0;F8VZ51;F8VXD2 P11802 107 118 CDK4 Cyclin-dependent kinase 4 yes no 2 0.0081325 38.086 By MS/MS 1 0.63449 0.53449 NaN 1 Median NaN NaN NaN 0 0 Median 0.63449 0.53449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2710800 1512900 1197900 0 0 0 2710800 1512900 1197900 0 0 0 0 0 0 0 0 0 0 0 0 2584 1971 2705 13323 13625;13626 13625 2 APPPGLPAETIKDLMR VFEHVDQDLRTYLDKAPPPGLPAETIKDLM PPPGLPAETIKDLMRQFLRGLDFLHANCIV K A P M R Q 2 1 0 1 0 0 1 1 0 1 2 1 1 0 4 0 1 0 0 0 0 0 16 1 1704.9233 P11802;F8VYH9;F8VTV8;F8VWX7;F8VZZ0;F8VZ51;F8VXD2 P11802 107 122 CDK4 Cyclin-dependent kinase 4 yes no 3 0.064594 10.467 By MS/MS By matching By matching 1 1 1 0.61807 0.61676 13.376 3 Plateau 0.61807 0.61676 NaN 1 0 Median 0.67168 0.61653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5966 0.48913 NaN 1 0 Median 6267700 3583100 2684600 5185500 2968100 2217400 894880 504250 390630 0 0 0 0 0 0 0 0 0 187350 110720 76631 2585 1971 2706 13324;13325;13326 13627 13627 1 APPQTHLPSGASSGTGSASATHGGGSPPGTR QEYNVGGKVIHLVERAPPQTHLPSGASSGT SASATHGGGSPPGTRGPGASVHDRNANSYV R A P T R G 4 1 0 0 0 1 0 7 2 0 1 0 0 0 5 6 4 0 0 0 0 0 31 0 2784.3175 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6TC96 P46379 88 118 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3;4 3.5922E-10 55.702 By MS/MS By MS/MS 2 3 0.54051 0.45375 18.687 5 Median 0.54569 0.5307 26.848 2 1 Median 0.54051 0.45375 16.92 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24646000 15304000 9341900 7666400 5097300 2569100 16980000 10207000 6772800 0 0 0 0 0 0 0 0 0 0 0 0 2586 8 2707 13327;13328;13329;13330;13331 13628;13629;13630;13631 13630 4 APPSVFAEVPQAQPVLVFK ______________________________ VFAEVPQAQPVLVFKLTADFREDPDPRKVN M A P F K L 3 0 0 0 0 2 1 0 0 0 1 1 0 2 4 1 0 0 0 4 0 0 19 0 2023.1142 P17174 P17174 2 20 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2;3 3.8051E-14 85.973 By MS/MS By MS/MS By matching 3 1 1 0.57552 0.55432 4.7591 5 Median 0.57552 0.53207 3.7589 3 2 Median 0.69056 0.59554 NaN 1 0 Median 0.49712 0.55432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40914000 24914000 16000000 37994000 23195000 14798000 1941300 1077800 863510 978810 640600 338210 0 0 0 0 0 0 0 0 0 2587 2038 2708 13332;13333;13334;13335;13336 13632;13633;13634;13635;13636 13633 5 APPTLQAETATKPQATSAPSPAPK GLIPAPSMVPATDTKAPPTLQAETATKPQA ATKPQATSAPSPAPKQSFLFGTQNTSPSSP K A P P K Q 6 0 0 0 0 2 1 0 0 0 1 2 0 0 6 2 4 0 0 0 0 0 24 1 2359.2383 A8CG34;Q96HA1 A8CG34 655 678 POM121C;POM121 Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121 yes no 3 5.7005E-20 86.551 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.45998 0.46429 9.114 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3419 0.39647 NaN 1 0 Median 0.4795 0.45676 NaN 1 0 Median 0.44126 0.47195 NaN 1 1 Median 0.5398 0.48764 NaN 1 0 Median 22089000 15297000 6792000 0 0 0 0 0 0 14349000 10212000 4137100 2444600 1347500 1097100 3727800 2688800 1039000 1567500 1048700 518770 2588 536 2709 13337;13338;13339;13340 13637;13638;13639 13637 3 APQAPLHSVVQQLHGK SFVATGLMEDDGKPRAPQAPLHSVVQQLHG PQAPLHSVVQQLHGKNLVFSDGYVVKETIG R A P G K N 2 0 0 0 0 3 0 1 2 0 2 1 0 0 2 1 0 0 0 2 0 0 16 0 1708.9373 E9PGT3;Q15418 E9PGT3 384 399 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 3 0.00064544 37.092 By MS/MS By matching 1 1 1.0069 0.91326 32.287 2 Median 0.78804 0.72684 NaN 1 0 Median 1.2865 1.1475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8128100 4445800 3682200 6874800 3868100 3006700 1253300 577720 675530 0 0 0 0 0 0 0 0 0 0 0 0 2589 926 2710 13341;13342 13640 13640 1 APQEFMTSHSEAGSR ACATETIDTSRVSLRAPQEFMTSHSEAGSR APQEFMTSHSEAGSRIVLNPNKPVVEWHRE R A P S R I 2 1 0 0 0 1 2 1 1 0 0 0 1 1 1 3 1 0 0 0 0 0 15 0 1633.7155 Q9BRR6 Q9BRR6 429 443 ADPGK ADP-dependent glucokinase yes yes 3 9.2359E-05 65.374 By MS/MS By MS/MS 1 1 1.1339 1.0437 7.1908 2 Median 1.1043 1.0981 NaN 1 0 Median 1.1642 0.99191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7463800 3423900 4039900 3732200 1786200 1946000 3731600 1637700 2093900 0 0 0 0 0 0 0 0 0 0 0 0 2590 3801 2711 13343;13344 13641;13642;13643;13644 13644 4 APQEVEEDDGR GLKPPLRKAAVRQQKAPQEVEEDDGRSGAG RQQKAPQEVEEDDGRSGAGEDPPMPASRGS K A P G R S 1 1 0 2 0 1 3 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 11 0 1243.5317 H0Y8F2;A0A494C117;A0A494BZT8;Q9Y6A5 H0Y8F2 44 54 TACC3 Transforming acidic coiled-coil-containing protein 3 yes no 2 0.00016143 81.338 By MS/MS 1 0.80782 0.71367 NaN 1 Median NaN NaN NaN 0 0 Median 0.80782 0.71367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 840640 476340 364290 0 0 0 840640 476340 364290 0 0 0 0 0 0 0 0 0 0 0 0 2591 451 2712 13345 13645 13645 1 APQFQESVGSFR SGGLTGFKTAPYKERAPQFQESVGSFRSNS KERAPQFQESVGSFRSNSFNSTFEHHLPPS R A P F R S 1 1 0 0 0 2 1 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 12 0 1351.6521 Q5VT52 Q5VT52 1171 1182 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.04767 59.426 By MS/MS 1 0.80783 0.88047 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80783 0.88047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16831000 9283900 7547100 0 0 0 0 0 0 16831000 9283900 7547100 0 0 0 0 0 0 0 0 0 2592 3110 2713 13346 13646 13646 0 APQHTAVGFK EYSEARRTMTNALRKAPQHTAVGFKQTVHK NALRKAPQHTAVGFKQTVHKLLIVVELLLG K A P F K Q 2 0 0 0 0 1 0 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 10 0 1054.556 O43242 O43242 316 325 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.00037046 81.548 By matching By MS/MS 1 1 0.91496 0.83437 4.0699 2 Median 0.88645 0.85873 NaN 1 0 Median 0.94439 0.8107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4559000 2292800 2266200 1131400 659610 471750 3427600 1633200 1794400 0 0 0 0 0 0 0 0 0 0 0 0 2593 1560 2714 13347;13348 13647 13647 1 APQLTSPELMALTR EYYLQNAFLVAYTKKAPQLTSPELMALTRK KAPQLTSPELMALTRKMANAGAICCHLSED K A P T R K 2 1 0 0 0 1 1 0 0 0 3 0 1 0 2 1 2 0 0 0 0 0 14 0 1526.8127 CON__Q3SZ57 CON__Q3SZ57 440 453 yes yes 2 0.00184 59.542 By MS/MS 1 0.37364 0.36753 NaN 1 Median 0.37364 0.36753 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3787000 2630100 1156900 3787000 2630100 1156900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 2594 778 2715 13349 13648 13648 1 APQLVGQFIAR KLLKDLPELALDTPRAPQLVGQFIARAVGD DTPRAPQLVGQFIARAVGDGILCNTYIDSY R A P A R A 2 1 0 0 0 2 0 1 0 1 1 0 0 1 1 0 0 0 0 1 0 0 11 0 1198.6822 Q53EL6 Q53EL6 257 267 PDCD4 Programmed cell death protein 4 yes yes 2 0.00015043 83.265 By MS/MS 2 0.74919 0.71155 11.392 2 Median 0.74919 0.71155 11.392 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32211000 18281000 13930000 32211000 18281000 13930000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2595 3026 2716 13350;13351 13649;13650;13651 13650 3 APQQWATFAR ______________________________ SSFSRAPQQWATFARIWYLLDGKMQPPGKL R A P A R I 3 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 10 0 1174.5883 Q9BYD1;E5RFI2 Q9BYD1 7 16 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 3.8321E-05 140.35 By MS/MS By MS/MS By MS/MS 2 1 1 0.86395 0.83119 17.331 4 Median 0.82302 0.78654 6.332 2 0 Median 1.3521 1.1217 NaN 1 0 Median 0.87433 0.83992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47279000 24322000 22957000 27856000 14354000 13502000 3960000 1502100 2458000 15463000 8465800 6997000 0 0 0 0 0 0 0 0 0 2596 3888 2717 13352;13353;13354;13355 13652;13653;13654;13655;13656 13652 5 APQVDVDK VRQQGDLVRKLKEDKAPQVDVDKAVAELKA RKLKEDKAPQVDVDKAVAELKARKRVLEAK K A P D K A 1 0 0 2 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 8 0 870.4447 P41250 P41250 86 93 GARS Glycine--tRNA ligase yes yes 2 0.012958 53.968 By MS/MS 1 1.0594 0.94199 NaN 1 Median NaN NaN NaN 0 0 Median 1.0594 0.94199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470500 740500 729980 0 0 0 1470500 740500 729980 0 0 0 0 0 0 0 0 0 0 0 0 2597 2301 2718 13356 13657 13657 1 APQVLVLAPTR IEKLHGELQDRKRGRAPQVLVLAPTRELAN KRGRAPQVLVLAPTRELANQVSKDFSDITK R A P T R E 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 2 0 0 11 0 1163.7026 Q9NR30 Q9NR30 260 270 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00014177 87.806 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 4 6 4 1.0083 0.98589 16.023 24 Median 0.91912 0.88873 5.3994 3 0 Median 1.0083 0.87425 14.469 4 0 Median 1.0396 1.0961 18.917 3 0 Median 1.2185 1.045 11.587 4 0 Median 1.0171 1.0375 11.49 6 1 Median 0.96701 0.81761 13.662 4 0 Median 182150000 88751000 93402000 10495000 5074700 5419900 22499000 11332000 11167000 85212000 40433000 44779000 9140300 4404800 4735500 46766000 23324000 23441000 8041500 4182200 3859300 2598 4076 2719 13357;13358;13359;13360;13361;13362;13363;13364;13365;13366;13367;13368;13369;13370;13371;13372;13373;13374;13375;13376;13377;13378;13379;13380 13658;13659;13660;13661;13662;13663;13664;13665;13666;13667;13668;13669;13670;13671 13660 14 APQVVAEAAK YSESAKKEVVAEVVKAPQVVAEAAKTAKRK AEVVKAPQVVAEAAKTAKRKRESESESDET K A P A K T 4 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 0 982.54475 O60832 O60832 434 443 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.00036818 87.476 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 1.0302 0.89557 14.09 7 Median NaN NaN NaN 0 0 Median 0.80787 0.70397 NaN 1 0 Median 0.82376 0.8315 NaN 1 0 Median 1.0343 0.89557 NaN 1 0 Median 0.9133 0.88846 19.823 2 0 Median 1.1627 0.98698 0.28252 2 0 Median 13049000 6991000 6058000 0 0 0 1261000 638820 622150 4404700 2470000 1934700 898430 423340 475080 4089800 2230800 1859000 2395100 1228000 1167100 2599 1634 2720 13381;13382;13383;13384;13385;13386;13387 13672;13673;13674;13675 13674 4 APRPPPAAPAPPTPAYGAPSTNVTLEALLSTK KEAEPMDAEPAGDTRAPRPPPAAPAPPTPA APSTNVTLEALLSTKVAVAQFSQGARAAGG R A P T K V 7 1 1 0 0 0 1 1 0 0 3 1 0 0 9 2 4 0 1 1 0 0 32 1 3152.687 A0A140TA74;A0A140TA70;Q9BXA9 A0A140TA74 140 171 SALL3 Sal-like protein 3 yes no 3 0.015993 14.931 By MS/MS 1 0.19166 0.21892 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19166 0.21892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1306900 1003000 303930 0 0 0 0 0 0 1306900 1003000 303930 0 0 0 0 0 0 0 0 0 2600 315 2721 13388 13676 13676 1 APRPTIINAENLK GLSRPLRPLRQLVERAPRPTIINAENLKGL ERAPRPTIINAENLKGLDDLDADADDGWAG R A P L K G 2 1 2 0 0 0 1 0 0 2 1 1 0 0 2 0 1 0 0 0 0 0 13 1 1435.8147 Q5JSZ5 Q5JSZ5 347 359 PRRC2B Protein PRRC2B yes yes 3 0.0041734 34.611 By matching By MS/MS By matching 2 3 1 0.69887 0.67985 23.805 6 Median 0.60546 0.62027 19.727 2 0 Median 0.69519 0.64814 16.884 3 0 Median 0.85831 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12461000 7698100 4762400 4134900 2724500 1410500 6756800 4033100 2723700 1568700 940490 628250 0 0 0 0 0 0 0 0 0 2601 3051 2722 13389;13390;13391;13392;13393;13394 13677 13677 1 APSDLYQIILK EDFTGGVTEWYELRKAPSDLYQIILKALER ELRKAPSDLYQIILKALERGSLLGCSIDIS K A P L K A 1 0 0 1 0 1 0 0 0 2 2 1 0 0 1 1 0 0 1 0 0 0 11 0 1259.7125 P07384;E9PL37 P07384 230 240 CAPN1 Calpain-1 catalytic subunit yes no 2 0.003026 50.607 By MS/MS By MS/MS By MS/MS 3 2 2 0.95146 0.89367 44.749 7 Median 0.86737 0.83346 25.944 3 0 Median 1.68 1.4516 20.793 2 0 Median 1.1888 1.2634 62.399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14330000 6840400 7490100 5575800 2849200 2726600 5720200 2290000 3430200 3034400 1701200 1333300 0 0 0 0 0 0 0 0 0 2602 1886 2723 13395;13396;13397;13398;13399;13400;13401 13678;13679;13680 13680 3 APSDSSLGTPSDGRPELR PGDVEFEDFSQPMNRAPSDSSLGTPSDGRP DSSLGTPSDGRPELRGPGRSRTKRWPFGKK R A P L R G 1 2 0 2 0 0 1 2 0 0 2 0 0 0 3 4 1 0 0 0 0 0 18 1 1840.8915 M0R0F9;Q15642;M0R2H7;W4VSQ9 M0R0F9 186 203 TRIP10 Cdc42-interacting protein 4 yes no 3 0.00011244 39.237 By matching By MS/MS 1 1 0.89693 0.9146 7.2482 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77864 0.8689 NaN 1 0 Median 1.0332 0.9627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7677200 3434300 4242900 0 0 0 0 0 0 5344100 2340200 3003900 2333100 1094100 1239000 0 0 0 0 0 0 2603 1426 2724 13402;13403 13681 13681 1 APSGNEEPCLLK KITESDLSQLTASIRAPSGNEEPCLLKRLP SIRAPSGNEEPCLLKRLPNRHIGISFTPKE R A P L K R 1 0 1 0 1 0 2 1 0 0 2 1 0 0 2 1 0 0 0 0 0 0 12 0 1313.6286 Q14315 Q14315 1983 1994 FLNC Filamin-C yes yes 2 0.00038551 136.94 By MS/MS By matching By matching By matching 1 1 1 1 0.76781 0.71393 76.595 4 Median NaN NaN NaN 0 0 Median 0.59221 0.52383 NaN 1 0 Median 0.99548 0.97303 NaN 1 0 Median 0.20864 0.19817 NaN 1 0 Median 1.0353 1.0306 NaN 1 0 Median NaN NaN NaN 0 0 Median 68286000 39029000 29256000 0 0 0 10997000 6691700 4304900 25474000 12573000 12901000 11220000 9732700 1487500 20595000 10032000 10563000 0 0 0 2604 2871 2725 13404;13405;13406;13407 13682 13682 1 APSHVPFLLIGGGTAAFAAAR AALSASEGEEVPQDKAPSHVPFLLIGGGTA FLLIGGGTAAFAAARSIRARDPGARVLIVS K A P A R S 6 1 0 0 0 0 0 3 1 1 2 0 0 2 2 1 1 0 0 1 0 0 21 0 2023.1003 O95831 O95831 128 148 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 3 9.0358E-12 62.739 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.86402 0.77776 18.932 5 Median 0.78034 0.76146 NaN 1 0 Median 0.89257 0.77225 NaN 1 0 Median 0.79999 0.8421 11.24 2 0 Median 1.3795 1.1872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17214000 8951400 8262100 4553200 2394600 2158600 9985800 5150300 4835600 2453300 1327100 1126200 221120 79404 141710 0 0 0 0 0 0 2605 1797 2726 13408;13409;13410;13411;13412 13683;13684;13685;13686 13686 4 APSIALGFR FIFCFLPETLPLEKRAPSIALGFRDAADLL LPLEKRAPSIALGFRDAADLLSPLALLRFS R A P F R D 2 1 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 9 0 930.5287 D6RIZ4;D6RA47;D6RE79;Q14728 D6RIZ4 232 240 MFSD10 Major facilitator superfamily domain-containing protein 10 yes no 2 0.044997 32.355 By MS/MS 1 1.2965 1.0971 NaN 1 Median NaN NaN NaN 0 0 Median 1.2965 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2239400 1094500 1144900 0 0 0 2239400 1094500 1144900 0 0 0 0 0 0 0 0 0 0 0 0 2606 810 2727 13413 13687 13687 1 APSIDGKEELDLAEK ECFRSGVAEAPVGSKAPSIDGKEELDLAEK APSIDGKEELDLAEKMDIAVSYTGEELDFE K A P E K M 2 0 0 2 0 0 3 1 0 1 2 2 0 0 1 1 0 0 0 0 0 0 15 1 1613.8148 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;H0YAH7;H0YA84 H7C128 379 393 BRD8 Bromodomain-containing protein 8 yes no 3 8.8668E-05 63.631 By MS/MS By MS/MS 1 1 0.75446 0.7914 4.0709 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70514 0.81451 NaN 1 0 Median 0.80723 0.76894 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13775000 7875200 5899900 0 0 0 0 0 0 9664700 5776700 3888000 4110500 2098600 2011900 0 0 0 0 0 0 2607 620 2728 13414;13415 13688;13689;13690 13690 3 APSKPWSQVDEATIR QLRQKWHSLFLRRMRAPSKPWSQVDEATIR APSKPWSQVDEATIRAIIAVLSTEEQSAGL R A P I R A 2 1 0 1 0 1 1 0 0 1 0 1 0 0 2 2 1 1 0 1 0 0 15 1 1683.858 Q9H6S0 Q9H6S0 1140 1154 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 3 0.0072568 37.77 By MS/MS 1 0.7289 0.73317 NaN 1 Median 0.7289 0.73317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9209900 5098800 4111100 9209900 5098800 4111100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2608 3977 2729 13416 13691 13691 1 APSLDIKGPEVDVSGPK GDVDVSGPKLEGDIKAPSLDIKGPEVDVSG SLDIKGPEVDVSGPKLNIEGKSKKSRFKLP K A P P K L 1 0 0 2 0 0 1 2 0 1 1 2 0 0 3 2 0 0 0 2 0 0 17 1 1707.9043 Q09666 Q09666 3324 3340 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 2.2361E-14 167.44 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 0.78876 0.81357 19.532 7 Median 0.64102 0.69815 22.811 3 0 Median 0.77713 0.74012 13.383 2 1 Median 0.78876 0.89324 NaN 1 0 Median 0.93536 0.95028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84715000 50359000 34356000 52079000 32612000 19468000 12515000 8084200 4430900 19033000 9151600 9881000 1087500 511350 576130 0 0 0 0 0 0 2609 2749 2730 13417;13418;13419;13420;13421;13422;13423 13692;13693;13694;13695;13696;13697;13698;13699 13695 8 APSPEKAEEESER EGSDELTQGYIYFHKAPSPEKAEEESERLL HKAPSPEKAEEESERLLRELYLFDVLRADR K A P E R L 2 1 0 0 0 0 5 0 0 0 0 1 0 0 2 2 0 0 0 0 0 0 13 1 1457.6634 P08243 P08243 380 392 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2;3 0.00020035 73.781 By MS/MS By MS/MS 2 2 1.0823 1.0919 35.334 4 Median 1.0823 1.0919 0.41329 2 0 Median 1.1338 1.0245 60.867 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10519000 5342500 5176600 6687100 3004900 3682100 3832000 2337600 1494400 0 0 0 0 0 0 0 0 0 0 0 0 2610 1901 2731 13424;13425;13426;13427 13700;13701;13702;13703;13704;13705;13706 13702 7 APSSLSDAVPQR EEKMIPPTKPEIQAKAPSSLSDAVPQRADH QAKAPSSLSDAVPQRADHRVVGTIDQLVKR K A P Q R A 2 1 0 1 0 1 0 0 0 0 1 0 0 0 2 3 0 0 0 1 0 0 12 0 1226.6255 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 584 595 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.00058963 73.067 By matching By MS/MS By MS/MS 1 1 1 0.75581 0.83147 24.128 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75581 0.83147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67022 0.70271 NaN 1 0 Median 1.3887 1.1309 NaN 1 0 Median 10191000 5362600 4828800 0 0 0 0 0 0 4194200 2302000 1892200 0 0 0 4215700 2463500 1752300 1781600 597150 1184400 2611 1437 2732 13428;13429;13430 13707;13708 13707 2 APSTYGGGLSVSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSRF RAPSTYGGGLSVSSRFSSGGACGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 4 1 0 1 1 0 0 14 0 1337.6575 CON__P08779;P08779 CON__P08779 42 55 KRT16 Keratin, type I cytoskeletal 16 yes no 2 3.0266E-44 179.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 3 4 4 3 3 0.16327 0.16747 158.44 16 Median 0.36321 0.35812 75.69 6 6 Median 0.034364 0.029196 157.29 3 3 Median 0.213 0.23246 31.828 3 3 Median 0.017752 0.015458 NaN 1 1 Median 0.010219 0.010811 NaN 1 1 Median 0.015257 0.012255 162.41 2 2 Median 189960000 174050000 15905000 85751000 78505000 7246500 22904000 19208000 3696500 47635000 43035000 4600400 5611600 5570000 41622 10455000 10377000 77777 17600000 17358000 241850 + 2612 754 2733 13431;13432;13433;13434;13435;13436;13437;13438;13439;13440;13441;13442;13443;13444;13445;13446;13447;13448;13449;13450;13451;13452;13453;13454;13455;13456 13709;13710;13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736 13722 28 APSTYGGGLSVSSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSSR APSTYGGGLSVSSSRFSSGGACGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 5 1 0 1 1 0 0 15 0 1424.6896 P02533;CON__P02533 P02533 42 56 KRT14 Keratin, type I cytoskeletal 14 yes no 2 2.2867E-50 178.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 8 9 11 7 8 0.15639 0.14608 97.206 24 Median 0.1118 0.10662 49.935 6 6 Median 0.1411 0.12132 142.89 6 6 Median 0.3339 0.34402 39.472 2 2 Median 0.21096 0.18168 70.73 3 3 Median 0.1651 0.1707 116.38 4 4 Median 0.1504 0.12155 97.669 3 3 Median 486400000 416420000 69977000 101160000 96108000 5056600 109280000 52112000 57164000 43014000 42390000 623780 70793000 67834000 2958600 54586000 51344000 3241700 107570000 106630000 932110 + 2613 739 2734 13457;13458;13459;13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472;13473;13474;13475;13476;13477;13478;13479;13480;13481;13482;13483;13484;13485;13486;13487;13488;13489;13490;13491;13492;13493;13494;13495;13496;13497;13498;13499;13500;13501;13502;13503;13504;13505;13506;13507;13508;13509;13510 13737;13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763;13764;13765;13766;13767;13768;13769;13770;13771;13772;13773;13774;13775;13776;13777;13778;13779;13780;13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792;13793;13794 13779 58 APSVANVGSHCDLSLK TGEGRVKESITRRRRAPSVANVGSHCDLSL PSVANVGSHCDLSLKIPEISIQDMTAQVTS R A P L K I 2 0 1 1 1 0 0 1 1 0 2 1 0 0 1 3 0 0 0 2 0 0 16 0 1653.8145 P21333;Q60FE5 P21333 2150 2165 FLNA Filamin-A no no 3 2.6882E-05 71.601 By MS/MS 1 0.8784 0.78518 NaN 1 Median NaN NaN NaN 0 0 Median 0.8784 0.78518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42130000 21273000 20857000 0 0 0 42130000 21273000 20857000 0 0 0 0 0 0 0 0 0 0 0 0 2614 2088;3120 2735 13511 13795 13795 1 APSVATVGSICDLNLK SGEGRVKESITRTSRAPSVATVGSICDLNL PSVATVGSICDLNLKIPEINSSDMSAHVTS R A P L K I 2 0 1 1 1 0 0 1 0 1 2 1 0 0 1 2 1 0 0 2 0 0 16 0 1643.8553 O75369;E7EN95;A0A0C4DGA1 O75369 2105 2120 FLNB Filamin-B yes no 2 4.1907E-05 80.763 By MS/MS 1 1.0922 0.95244 NaN 1 Median NaN NaN NaN 0 0 Median 1.0922 0.95244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4371700 1789700 2582000 0 0 0 4371700 1789700 2582000 0 0 0 0 0 0 0 0 0 0 0 0 2615 1664 2736 13512 13796;13797 13797 2 APSVPAAEPEYPK ______________________________ ______________________________ M A P P K G 3 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 0 0 1 1 0 0 13 0 1354.6769 F8W1A4;P54819;F8VZG5;F8VY04;G3V213;F8VPP1 F8W1A4 2 14 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 1.0083E-06 98.943 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.89849 0.81113 31.663 6 Median 0.53936 0.49654 NaN 1 0 Median 1.0041 0.83665 NaN 1 0 Median 0.54086 0.50711 NaN 1 0 Median 0.94875 0.78639 NaN 1 0 Median 0.85089 0.87279 NaN 1 0 Median 1.3131 1.0949 NaN 1 0 Median 181880000 110810000 71068000 131350000 82839000 48515000 21533000 10472000 11061000 21843000 14140000 7703200 5074100 2243500 2830600 1471200 830590 640610 599770 283130 316630 2616 1081 2737 13513;13514;13515;13516;13517;13518 13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808 13806 11 APSYIEIFGR MTGMRIQIGTQAIERAPSYIEIFGRTMQLN QAIERAPSYIEIFGRTMQLNLSRSRWFDFP R A P G R T 1 1 0 0 0 0 1 1 0 2 0 0 0 1 1 1 0 0 1 0 0 0 10 0 1151.5975 Q5T4S7;A0A0A0MSW0 Q5T4S7 2364 2373 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0020391 61.679 By MS/MS By matching By matching By matching 1 2 1 1 0.96451 0.94507 19.978 5 Median 0.96451 0.94507 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0156 1.058 21.416 2 0 Median 1.1677 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75411 0.70609 NaN 1 0 Median 15106000 6710000 8395900 11442000 5050200 6391500 0 0 0 3127400 1409800 1717500 180200 71265 108930 0 0 0 356690 178730 177960 2617 3089 2738 13519;13520;13521;13522;13523 13809 13809 1 APSYLEISSMR GCVVVDGMPPGVSFKAPSYLEISSMRRILD VSFKAPSYLEISSMRRILDSAEFIKFTVIR K A P M R R 1 1 0 0 0 0 1 0 0 1 1 0 1 0 1 3 0 0 1 0 0 0 11 0 1252.6122 P78347;A0A494C1K3 P78347 917 927 GTF2I General transcription factor II-I yes no 2 0.00011336 132.01 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 3 1 2 1.1304 0.92451 36.541 15 Median 0.92773 0.88455 44.422 2 0 Median 0.9732 0.84044 NaN 1 0 Median 0.95557 1.0105 52.498 6 0 Median 1.1454 1.0157 14.744 3 0 Median 0.70706 0.7496 NaN 1 0 Median 1.329 1.116 26.622 2 0 Median 95103000 53549000 41554000 8529300 5151200 3378100 1510100 702700 807390 77032000 43770000 33262000 3856400 1716800 2139600 2537700 1378300 1159400 1637800 830600 807160 2618 2642 2739;2740 13524;13525;13526;13527;13528;13529;13530;13531;13532;13533;13534;13535;13536;13537;13538 13810;13811;13812;13813;13814;13815;13816;13817;13818;13819;13820;13821 13812 1300 12 APSYLEISSMRR GCVVVDGMPPGVSFKAPSYLEISSMRRILD SFKAPSYLEISSMRRILDSAEFIKFTVIRP K A P R R I 1 2 0 0 0 0 1 0 0 1 1 0 1 0 1 3 0 0 1 0 0 0 12 1 1408.7133 P78347;A0A494C1K3 P78347 917 928 GTF2I General transcription factor II-I yes no 3 1.2765E-06 99.522 By MS/MS 1 0.66909 0.81375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66909 0.81375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6401100 3868200 2532900 0 0 0 0 0 0 6401100 3868200 2532900 0 0 0 0 0 0 0 0 0 2619 2642 2741 13539 13822 13822 1 APTIAQLLQEK SGITGDIGDELQEARAPTIAQLLQEKTLYS QEARAPTIAQLLQEKTLYSFSEWPKDRVII R A P E K T 2 0 0 0 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1210.6921 Q8TD26 Q8TD26 2073 2083 CHD6 Chromodomain-helicase-DNA-binding protein 6 yes yes 2 0.00071474 64.04 By MS/MS 1 0.32623 0.3507 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32623 0.3507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5604500 3951100 1653300 0 0 0 0 0 0 5604500 3951100 1653300 0 0 0 0 0 0 0 0 0 2620 3469 2742 13540 13823;13824 13823 2 APTIEQMK RFRHENIIGINDIIRAPTIEQMKDVYIVQD GINDIIRAPTIEQMKDVYIVQDLMETDLYK R A P M K D 1 0 0 0 0 1 1 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 8 0 916.4688 P28482 P28482 92 99 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 0.008272 63.565 By MS/MS 1 1.0394 0.89629 NaN 1 Median NaN NaN NaN 0 0 Median 1.0394 0.89629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701000 1294200 1406800 0 0 0 2701000 1294200 1406800 0 0 0 0 0 0 0 0 0 0 0 0 2621 2166 2743 13541 13825;13826 13825 2 APTIETVVLYTGETPSEQDQGKR EIRRQIGKQEGGPFKAPTIETVVLYTGETP LYTGETPSEQDQGKRIIERDRKRPSWFTQN K A P K R I 1 1 0 1 0 2 3 2 0 1 1 1 0 0 2 1 4 0 1 2 0 0 23 1 2518.2551 Q9BYC8 Q9BYC8 151 173 MRPL32 39S ribosomal protein L32, mitochondrial yes yes 3 3.5378E-16 68.369 By MS/MS 1 0.71543 0.74151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71543 0.74151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13444000 7986600 5457600 0 0 0 0 0 0 13444000 7986600 5457600 0 0 0 0 0 0 0 0 0 2622 3887 2744 13542 13827;13828 13828 2 APTLPGSAATLQLDGLAR SRLQPKQPLRLQFGRAPTLPGSAATLQLDG LPGSAATLQLDGLARAPGQPKIDHLRRLHL R A P A R A 4 1 0 1 0 1 0 2 0 0 4 0 0 0 2 1 2 0 0 0 0 0 18 0 1750.9577 Q9Y2X0;A0A0J9YYC6;A0A0J9YXE6;A0A0J9YXA0 Q9Y2X0 755 772 MED16 Mediator of RNA polymerase II transcription subunit 16 yes no 2 7.291E-05 48.741 By matching By matching By MS/MS 1 1 1 0.71821 0.7563 24.927 3 Plateau 0.75111 0.7563 NaN 1 0 Median 0.5214 0.47187 NaN 1 0 Median 0.61052 0.68694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2959500 1740000 1219500 1541500 833580 707930 388340 240650 147690 1029600 665740 363880 0 0 0 0 0 0 0 0 0 2623 4395 2745 13543;13544;13545 13829 13829 1 APTNIVYK ISQVTIVGIIRHAEKAPTNIVYKIDDMTAA IIRHAEKAPTNIVYKIDDMTAAPMDVRQWV K A P Y K I 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 8 0 904.50182 Q5TEJ7;P15927 Q5TEJ7 90 97 RPA2 Replication protein A 32 kDa subunit yes no 2 0.0069954 68.915 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 1 1 1.1366 1.09 18.976 7 Median 1.1894 1.1076 16.392 2 1 Median 1.3075 1.1037 25.789 2 1 Median 1.1366 1.09 NaN 1 0 Median 1.0002 0.83961 NaN 1 0 Median 1.3492 1.3747 NaN 1 0 Median NaN NaN NaN 0 0 Median 43170000 19602000 23568000 21217000 8981500 12236000 6992500 3245000 3747600 5478900 2663700 2815200 7311100 3540400 3770700 2169800 1171100 998730 0 0 0 2624 2022 2746 13546;13547;13548;13549;13550;13551;13552;13553;13554 13830;13831;13832;13833;13834;13835;13836;13837 13836 8 APVAPTPPTLIK TAGQGSPCEEQEEPRAPVAPTPPTLIKSDI EPRAPVAPTPPTLIKSDIVNEISNLSQGDA R A P I K S 2 0 0 0 0 0 0 0 0 1 1 1 0 0 4 0 2 0 0 1 0 0 12 0 1203.7227 O14686 O14686 1190 1201 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.0038153 56.916 By MS/MS By MS/MS 1 2 0.54312 0.4905 11.84 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44864 0.48029 NaN 1 0 Median 0.58366 0.5404 13.701 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10337000 7149200 3188100 0 0 0 0 0 0 8644700 6184100 2460600 1692600 965050 727580 0 0 0 0 0 0 2625 1490 2747 13555;13556;13557 13838;13839 13839 1 APVDFGYVGIDSILEQMR RDAGLKQAPASRNEKAPVDFGYVGIDSILE DFGYVGIDSILEQMRRKAMKQGFEFNIMVV K A P M R R 1 1 0 2 0 1 1 2 0 2 1 0 1 1 1 1 0 0 1 2 0 0 18 0 2008.9928 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9;K7EJZ2;K7ER14;K7ENQ5;K7EN52;K7EKN4;K7EIR4;K7EJL9;K7EQ08 Q9UHD8 272 289 SEPT9 Septin-9 yes no 2;3 9.2336E-08 90.926 By matching By MS/MS By matching By MS/MS By matching 2 7 2 2 1 1.0272 1.031 10.568 14 Median NaN NaN NaN 0 0 Median 1.3703 1.197 8.1599 2 0 Median 0.9533 1.0078 7.8958 7 0 Median 1.2489 1.0788 0.84184 2 0 Median 0.97467 1.0269 15.706 2 0 Median 1.2145 1.0208 NaN 1 0 Median 21660000 10648000 11012000 0 0 0 1403100 354080 1049000 18551000 9471600 9079900 466300 204650 261650 1196000 598620 597390 43112 19435 23677 2626 4276 2748 13558;13559;13560;13561;13562;13563;13564;13565;13566;13567;13568;13569;13570;13571 13840;13841;13842;13843;13844;13845;13846;13847;13848;13849;13850;13851;13852 13843 13 APVDITGQFEK KFLNEFFLNVKDILRAPVDITGQFEKWGEE DILRAPVDITGQFEKWGEEEAELNKNFYDK R A P E K W 1 0 0 1 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 11 0 1203.6136 P49589;B4DKY1 P49589 472 482 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.00016921 79.974 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.87725 0.83084 9.8198 4 Median 1.0186 0.91778 NaN 1 0 Median 0.86335 0.75871 NaN 1 0 Median 0.81533 0.89418 NaN 1 0 Median 0.89138 0.77199 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31844000 15593000 16251000 15179000 7275900 7903100 3233700 1655300 1578400 7323500 3531100 3792400 6107900 3130500 2977300 0 0 0 0 0 0 2627 2386 2749 13572;13573;13574;13575 13853;13854;13855;13856;13857 13853 5 APVLSIDPPVHEVEQGIDAK QPWYKAAVAWANQNRAPVLSIDPPVHEVEQ IDPPVHEVEQGIDAKWSLALGLPLPLGEHA R A P A K W 2 0 0 2 0 1 2 1 1 2 1 1 0 0 3 1 0 0 0 3 0 0 20 0 2113.1055 Q96F86 Q96F86 437 456 EDC3 Enhancer of mRNA-decapping protein 3 yes yes 3 0.002297 37.112 By MS/MS 1 0.52294 0.52898 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52294 0.52898 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4183200 2564100 1619100 0 0 0 0 0 0 4183200 2564100 1619100 0 0 0 0 0 0 0 0 0 2628 3648 2750 13576 13858 13858 1 APVNTAELTDLLIQQNHIGSVIK DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ TDLLIQQNHIGSVIKQTDVSEDSNDDMDED K A P I K Q 2 0 2 1 0 2 1 1 1 3 3 1 0 0 1 1 2 0 0 2 0 0 23 0 2473.354 Q9P287 Q9P287 85 107 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 3 5.8528E-49 133.68 By MS/MS By MS/MS 1 2 0.95346 0.80157 7.4438 3 Median 0.98013 0.90587 NaN 1 0 Median 0.94128 0.79665 0.87096 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36238000 19106000 17131000 15988000 7707300 8280700 20250000 11399000 8850400 0 0 0 0 0 0 0 0 0 0 0 0 2629 4218 2751 13577;13578;13579 13859;13860;13861;13862 13860 4 APVPASELLASGVLSR VETLRQERLSFSGLRAPVPASELLASGVLS PVPASELLASGVLSRAQFEQLKDGKTTVKD R A P S R A 3 1 0 0 0 0 1 1 0 0 3 0 0 0 2 3 0 0 0 2 0 0 16 0 1565.8777 Q15149;H0YDN1 Q15149 3447 3462 PLEC Plectin yes no 2;3 3.5009E-10 113.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 2 3 3 0.99215 0.88476 7.7017 18 Median 0.87313 0.85083 9.0645 5 0 Median 1.0487 0.88418 7.825 3 0 Median 0.84591 0.89166 1.0073 2 0 Median 1.0075 0.87535 3.2857 2 0 Median 0.90317 0.92595 10.91 3 1 Median 1.0513 0.87846 3.0309 3 0 Median 184350000 94709000 89642000 84198000 43959000 40239000 36000000 17748000 18252000 40199000 21033000 19166000 1897800 914490 983290 19808000 9957900 9850400 2249400 1098000 1151300 2630 2933 2752 13580;13581;13582;13583;13584;13585;13586;13587;13588;13589;13590;13591;13592;13593;13594;13595;13596;13597 13863;13864;13865;13866;13867;13868;13869;13870;13871;13872;13873;13874;13875;13876;13877;13878;13879;13880;13881;13882;13883;13884;13885;13886;13887 13873 25 APVPGTPDSLSSGSSR SMVAQAMGVYGALTKAPVPGTPDSLSSGSS PVPGTPDSLSSGSSRDVQGTDASLDEELDR K A P S R D 1 1 0 1 0 0 0 2 0 0 1 0 0 0 3 5 1 0 0 1 0 0 16 0 1513.7372 Q9UJZ1;A0A087WYB4 Q9UJZ1 322 337 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 2.0918E-08 134.98 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.89416 0.83244 13.088 5 Median 0.64213 0.64223 NaN 1 0 Median 0.97461 0.84999 2.9493 2 2 Median 0.82374 0.89257 NaN 1 0 Median 0.89416 0.79373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55873000 31682000 24191000 24030000 14562000 9468400 26297000 14075000 12222000 4448000 2460200 1987800 1097300 584360 512920 0 0 0 0 0 0 2631 4304 2753 13598;13599;13600;13601;13602 13888;13889;13890;13891;13892;13893;13894;13895;13896 13896 9 APVPTGEVYFADSFDR PDTTAPPSSPKVTYKAPVPTGEVYFADSFD PVPTGEVYFADSFDRGTLSGWILSKAKKDD K A P D R G 2 1 0 2 0 0 1 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 16 0 1769.8261 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7;D6RAQ8;D6RHJ3;D6RD16 P27824 62 77 CANX Calnexin yes no 2 1.8036E-09 157.03 By MS/MS By MS/MS By matching 2 2 1 0.96705 0.83618 14.977 5 Median 0.79889 0.76715 1.9161 2 0 Median 1.0109 0.87342 6.1622 2 0 Median 1.0256 1.0973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117860000 62412000 55448000 96803000 51939000 44864000 18646000 9340100 9306100 2411400 1133100 1278300 0 0 0 0 0 0 0 0 0 2632 2158 2754 13603;13604;13605;13606;13607 13897;13898;13899;13900;13901;13902;13903;13904;13905 13900 9 APVQPQQSPAAAPGGTDEKPSGK ______________________________ PAAAPGGTDEKPSGKERRDAGDKDKEQELS K A P G K E 4 0 0 1 0 3 1 3 0 0 0 2 0 0 5 2 1 0 0 1 0 0 23 1 2217.1026 Q13200;C9JPC0;F8WBS8 Q13200 9 31 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 9.5952E-08 44.953 By MS/MS 1 0.60671 0.58679 NaN 1 Median NaN NaN NaN 0 0 Median 0.60671 0.58679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2079400 1352700 726710 0 0 0 2079400 1352700 726710 0 0 0 0 0 0 0 0 0 0 0 0 2633 2796 2755 13608 13906 13906 1 APVSSTESVIQSNTPTPPPSQPLNETAEEESR SLPQNETVADTTLTKAPVSSTESVIQSNTP PPSQPLNETAEEESRISSSPTLLENSLEQT K A P S R I 2 1 2 0 0 2 5 0 0 1 1 0 0 0 6 6 4 0 0 2 0 0 32 0 3378.6063 Q9HC35;B5MBZ0 Q9HC35 884 915 EML4 Echinoderm microtubule-associated protein-like 4 yes no 3 2.5099E-30 81.697 By MS/MS 1 0.41712 0.41083 NaN 1 Median 0.41712 0.41083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8646700 5902900 2743800 8646700 5902900 2743800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2634 4024 2756 13609 13907 13907 1 APVSYPNTLPESFTK DYTFNVDQKLPAEEKAPVSYPNTLPESFTK APVSYPNTLPESFTKFLQEQRMACEVGLYY K A P T K F 1 0 1 0 0 0 1 0 0 0 1 1 0 1 3 2 2 0 1 1 0 0 15 0 1649.8301 Q8WX92 Q8WX92 399 413 NELFB Negative elongation factor B yes yes 2 5.196E-10 108.37 By MS/MS By MS/MS 1 1 1.0889 1.0595 42.998 2 Median 1.5299 1.436 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.77497 0.78174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24985000 12018000 12968000 11809000 4413800 7395400 0 0 0 13176000 7603700 5572400 0 0 0 0 0 0 0 0 0 2635 3514 2757 13610;13611 13908;13909;13910 13910 3 APVTVTSLPAGVR GTPLVTMRPASQAGKAPVTVTSLPAGVRMV GKAPVTVTSLPAGVRMVVPTQSAQGTVIGS K A P V R M 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 1 2 0 0 3 0 0 13 0 1266.7296 A6NEM2;P51610 A6NEM2 512 524 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.00016392 94.309 By matching By MS/MS By MS/MS By matching 1 2 1 2 0.77024 0.68256 45.327 6 Median NaN NaN NaN 0 0 Median 1.026 0.90007 NaN 1 0 Median 0.80928 0.8921 64.26 2 1 Median 0.59769 0.5092 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69646 0.57541 50.549 2 0 Median 22668000 14466000 8201200 0 0 0 323670 139550 184120 20104000 13090000 7013600 1588900 876040 712830 0 0 0 651240 360580 290660 2636 509;2438 2758 13612;13613;13614;13615;13616;13617 13911;13912 13911 1 APVVAIAVLDGR AVEAVLGKEVQLMHRAPVVAIAVLDGRGRP MHRAPVVAIAVLDGRGRPLPEPYEASRDLA R A P G R G 3 1 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 12 0 1179.6976 A0A087WW77;Q15334 A0A087WW77 783 794 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 2 9.9476E-05 91.584 By MS/MS 3 1.1507 1.1356 11.659 3 Plateau 1.1507 1.1356 11.659 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11102000 5430000 5671600 11102000 5430000 5671600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2637 55 2759 13618;13619;13620 13913;13914 13913 2 APWELLELR TILFADLHAYLDNMKAPWELLELRVSYYEN YLDNMKAPWELLELRVSYYENVIKAMLESI K A P L R V 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 0 1 0 0 0 0 9 0 1125.6182 P54577;A0A0C4DGZ5 P54577 85 93 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.010372 48.283 By MS/MS By matching By MS/MS 1 3 1 1.0156 0.88988 12.483 5 Median 1.014 0.96983 NaN 1 0 Median 1.0156 0.88385 4.4206 3 0 Median 1.1243 1.1382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29164000 14645000 14518000 8730400 4394200 4336200 12149000 5946800 6201700 8284700 4304200 3980400 0 0 0 0 0 0 0 0 0 2638 2482 2760 13621;13622;13623;13624;13625 13915;13916;13917 13916 3 APWIEQEGPEYWDR VRFDSDAASPREEPRAPWIEQEGPEYWDRN RAPWIEQEGPEYWDRNTQIYKAQAQTDRES R A P D R N 1 1 0 1 0 1 3 1 0 1 0 0 0 0 2 0 0 2 1 0 0 0 14 0 1774.7951 A0A1W2PPR8;P01889;F6U0H7;A0A140TA21;A0A140T9D4 A0A1W2PPR8 73 86 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain no no 2 3.2479E-07 115.18 By MS/MS By matching By matching By matching 1 1 1 1 1.0329 1.0978 28.928 4 Median NaN NaN NaN 0 0 Median 0.73144 0.63178 NaN 1 0 Median 0.98334 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0849 1.1475 NaN 1 0 Median 1.4744 1.1622 NaN 1 0 Median 4098900 2010700 2088200 0 0 0 953530 592770 360760 1405200 583180 822050 0 0 0 1635800 790110 845660 104420 44652 59768 2639 339 2761 13626;13627;13628;13629 13918 13918 1 APYIAYLTR CRKLLASIAEDYRKRAPYIAYLTRCRQGLQ EDYRKRAPYIAYLTRCRQGLQTTQAHLERL R A P T R C 2 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 2 0 0 0 9 0 1066.5811 Q14C86;F8W9S7 Q14C86 1211 1219 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.0022552 73.26 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1307 1.1042 100.64 5 Median 1.1307 1.1042 NaN 1 0 Median 3.3116 2.9961 165.43 2 0 Median NaN NaN NaN 0 0 Median 1.2858 1.1281 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0829 0.95372 NaN 1 0 Median 6265400 2029500 4235900 3421400 1443000 1978400 2478800 442310 2036500 0 0 0 82676 36632 46044 0 0 0 282500 107510 175000 2640 2907 2762 13630;13631;13632;13633;13634 13919;13920;13921 13919 3 AQAAAPASVPAQAPK RPKAKAKAKAKDQTKAQAAAPASVPAQAPK AQAAAPASVPAQAPKRTQAPTKASE_____ K A Q P K R 7 0 0 0 0 2 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 15 0 1376.7412 A0A3B3ITT5;P47914 A0A3B3ITT5 143 157 RPL29 60S ribosomal protein L29 yes no 2 6.4277E-10 111.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 1 2 0.71662 0.62186 16.872 11 Median 0.65868 0.60981 NaN 1 0 Median 0.73912 0.62186 26.619 3 1 Median 0.63612 0.59771 NaN 1 0 Median 0.71662 0.66161 17.321 3 0 Median 0.70361 0.71987 NaN 1 0 Median 0.78508 0.64492 5.7812 2 0 Median 86447000 50027000 36419000 25718000 14779000 10939000 6169600 3495700 2673900 7922100 4835900 3086200 5109000 2921000 2188000 37238000 21722000 15516000 4289100 2273300 2015800 2641 438 2763 13635;13636;13637;13638;13639;13640;13641;13642;13643;13644;13645 13922;13923;13924;13925;13926;13927;13928;13929;13930;13931;13932;13933;13934;13935;13936;13937;13938;13939;13940;13941;13942;13943;13944;13945;13946 13924 25 AQAAAPASVPAQAPKR RPKAKAKAKAKDQTKAQAAAPASVPAQAPK QAAAPASVPAQAPKRTQAPTKASE______ K A Q K R T 7 1 0 0 0 2 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 16 1 1532.8423 A0A3B3ITT5;P47914 A0A3B3ITT5 143 158 RPL29 60S ribosomal protein L29 yes no 3 0.021437 17.281 By MS/MS 1 0.75274 0.7931 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75274 0.7931 NaN 1 0 Median NaN NaN NaN 0 0 Median 1386700 691730 695000 0 0 0 0 0 0 0 0 0 0 0 0 1386700 691730 695000 0 0 0 2642 438 2764 13646 13947 13947 1 AQAALAVNISAAR MAAVKTLNPKAEVARAQAALAVNISAARGL ARAQAALAVNISAARGLQDVLRTNLGPKGT R A Q A R G 6 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1254.7044 P40227 P40227 16 28 CCT6A T-complex protein 1 subunit zeta yes yes 2 1.0211E-06 129.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1 1.1642 1.057 17.579 9 Median 1.114 1.0505 0.86997 2 1 Median 1.2361 1.0544 7.4928 3 0 Plateau 1.2619 1.2556 7.3337 2 2 Median 1.5124 1.2961 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85146 0.74106 NaN 1 0 Median 183690000 75516000 108170000 117150000 49355000 67792000 23739000 9628600 14110000 37091000 14276000 22815000 5103100 2094500 3008700 0 0 0 605780 161250 444530 2643 2285 2765 13647;13648;13649;13650;13651;13652;13653;13654;13655 13948;13949;13950;13951;13952;13953;13954;13955;13956;13957;13958;13959;13960;13961;13962;13963;13964 13949 17 AQAALQAQQVNR GSLGPLLCSQVVKARAQAALQAQQVNRTTL KARAQAALQAQQVNRTTLTITQPRPTLTLS R A Q N R T 4 1 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1296.6898 J3KR72;P49848 J3KR72 525 536 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 0.00062081 66.621 By MS/MS 1 0.82443 0.86647 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82443 0.86647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1343400 701390 641990 0 0 0 0 0 0 1343400 701390 641990 0 0 0 0 0 0 0 0 0 2644 1323 2766 13656 13965;13966 13966 2 AQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLR NHRELKTDNLPNQARAQAALQAVSAVQSGS SNEGTVLPGQSPVLRIIIENLFYPVTLEVL R A Q L R I 6 1 1 0 0 4 1 5 0 0 5 0 0 0 3 6 1 0 0 4 0 0 37 0 3516.8536 O95758 O95758 147 183 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 4 0.0056661 19.731 By MS/MS By matching 1 1 0.4956 0.49822 11.773 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45612 0.45843 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5385 0.54147 NaN 1 0 Median NaN NaN NaN 0 0 Median 5340800 3243700 2097100 0 0 0 0 0 0 3413300 2018300 1395100 0 0 0 1927500 1225400 702060 0 0 0 2645 1791 2767 13657;13658 13967 13967 1 AQADLALEK QQEREVARLTQERGRAQADLALEKAARAEL TQERGRAQADLALEKAARAELEMRLQNALN R A Q E K A 3 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 957.51311 A0A087WY61;Q14980 Q14980 1016 1024 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.004116 61.679 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1.0138 0.92007 15.695 7 Median NaN NaN NaN 0 0 Median 1.1238 0.99629 NaN 1 0 Median 0.87472 0.92016 0.014105 2 0 Median 1.0138 0.91831 NaN 1 0 Median 0.87094 0.91248 NaN 1 0 Median 1.3194 1.1146 31.168 2 0 Median 59623000 29742000 29880000 0 0 0 5983200 2832700 3150500 18818000 9099100 9719100 1912100 949240 962810 23444000 12478000 10966000 9465100 4383600 5081500 2646 2905;77 2768 13659;13660;13661;13662;13663;13664;13665 13968;13969;13970;13971;13972;13973;13974;13975 13971 8 AQAEAQQPTFDALR LPELEATKASLKKLRAQAEAQQPTFDALRD RAQAEAQQPTFDALRDELRGAQEVGERLQQ R A Q L R D 4 1 0 1 0 3 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 14 0 1544.7583 Q15149;H0YDN1 Q15149 1274 1287 PLEC Plectin yes no 2 0.0010179 51.927 By MS/MS 1 0.84614 0.73623 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84614 0.73623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 985140 491220 493920 0 0 0 0 0 0 0 0 0 985140 491220 493920 0 0 0 0 0 0 2647 2933 2769 13666 13976;13977 13977 2 AQAEAQQPTFDALRDELR LPELEATKASLKKLRAQAEAQQPTFDALRD EAQQPTFDALRDELRGAQEVGERLQQRHGE R A Q L R G 4 2 0 2 0 3 2 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 1 2058.013 Q15149;H0YDN1 Q15149 1274 1291 PLEC Plectin yes no 2;3 2.57E-14 159.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 0.9287 1.0092 17.632 8 Median 0.9287 1.0092 1.7816 2 0 Median 1.3015 1.2198 1.8459 3 0 Median 0.85774 0.94266 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90995 0.98436 NaN 1 0 Median 0.80367 0.72652 NaN 1 0 Median 172300000 81694000 90610000 105790000 49854000 55932000 19003000 8139000 10864000 34739000 17221000 17518000 0 0 0 12553000 6360400 6192300 224120 120050 104070 2648 2933 2770 13667;13668;13669;13670;13671;13672;13673;13674 13978;13979;13980;13981;13982;13983;13984;13985;13986;13987 13981 10 AQAEHMLMR NAHESKEWYHASLTRAQAEHMLMRVPRDGA HASLTRAQAEHMLMRVPRDGAFLVRKRNEP R A Q M R V 2 1 0 0 0 1 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 9 0 1085.511 P19174 P19174 676 684 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.015224 43.769 By MS/MS 1 1.1967 1.0166 NaN 1 Median NaN NaN NaN 0 0 Median 1.1967 1.0166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3739100 1707300 2031800 0 0 0 3739100 1707300 2031800 0 0 0 0 0 0 0 0 0 0 0 0 2649 2062 2771 13675 13988 13988 1 AQAELENVSGALNEAESK DGERARAEAAEKLQRAQAELENVSGALNEA ELENVSGALNEAESKTIRLSKELSSTEAQL R A Q S K T 4 0 2 0 0 1 4 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 18 0 1858.8909 Q7Z406;A0A0C4DFM8 Q7Z406 1302 1319 MYH14 Myosin-14 yes no 2 1.837E-15 150.16 By MS/MS By matching By matching 1 1 1 1.1163 1.067 8.7173 3 Plateau 1.1192 1.0818 NaN 1 0 Median 1.0801 0.95295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0596 0.91541 NaN 1 0 Median 14302000 7033400 7268700 12145000 5962600 6182900 1854700 868820 985840 0 0 0 0 0 0 0 0 0 301900 201950 99954 2650 3242 2772 13676;13677;13678 13989;13990 13990 2 AQAELVGTADEATR LDMLDLGAAKANLEKAQAELVGTADEATRA KAQAELVGTADEATRAEIQIRIEANEALVK K A Q T R A 4 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 14 0 1430.7001 P30049 P30049 137 150 ATP5D ATP synthase subunit delta, mitochondrial yes yes 2;3 6.2675E-39 173.37 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1.0518 1.0307 13.945 7 Median 0.99948 0.96847 10.702 2 0 Median 1.3399 1.1252 11.883 3 0 Plateau 1.0276 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0018 0.78575 NaN 1 0 Median 97790000 42899000 54891000 59138000 28701000 30437000 33650000 11838000 21812000 4196000 2037400 2158500 0 0 0 0 0 0 805960 322140 483820 2651 2184 2773 13679;13680;13681;13682;13683;13684;13685;13686 13991;13992;13993;13994;13995;13996;13997;13998;13999;14000 13998 10 AQAEVEGLGK EPARECAQRIAEQQKAQAEVEGLGKGVARL AEQQKAQAEVEGLGKGVARLSAEAEKVLAL K A Q G K G 2 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1000.5189 Q15149;H0YDN1 Q15149 1166 1175 PLEC Plectin yes no 2 0.0004183 88.948 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.5884 1.3606 41.778 3 Median NaN NaN NaN 0 0 Median 1.0823 0.94403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0601 2.1725 NaN 1 1 Median 1.5884 1.3606 NaN 1 0 Median 14615000 6727100 7887600 0 0 0 4754400 2533700 2220700 0 0 0 0 0 0 2793100 1245200 1547900 7067200 2948200 4119000 2652 2933 2774 13687;13688;13689;13690 14001;14002;14003;14004;14005 14004 5 AQAGEGVRPSPMQLELR STLHHVLQRTIQCAKAQAGEGVRPSPMQLE AGEGVRPSPMQLELRMVQSKRDIEDPEIVV K A Q L R M 2 2 0 0 0 2 2 2 0 0 2 0 1 0 2 1 0 0 0 1 0 0 17 1 1837.9469 O00764;F2Z2Y4 O00764 276 292 PDXK Pyridoxal kinase yes no 3 8.5783E-06 56.959 By MS/MS By MS/MS By matching 1 1 1 0.8054 0.8175 5.307 3 Median 0.75936 0.8175 NaN 1 0 Median 0.90075 0.82909 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8054 0.75159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34837000 18703000 16134000 23038000 12751000 10287000 11122000 5641600 5480900 0 0 0 677110 310440 366670 0 0 0 0 0 0 2653 1478 2775 13691;13692;13693 14006;14007;14008;14009 14007 4 AQALEDLAGFK TLPGSKRQLQTPKEKAQALEDLAGFKELFQ PKEKAQALEDLAGFKELFQTPGHTEELVAA K A Q F K E 3 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1161.603 P46013 P46013 1218 1228 MKI67 Antigen KI-67 yes no 2 0.00019975 96.331 By matching By MS/MS By MS/MS By MS/MS By matching 3 7 9 1 1 1.1545 1.0835 24.642 20 Median NaN NaN NaN 0 0 Median 0.94093 0.90246 41.722 3 0 Median 1.1287 1.2212 19.488 6 0 Median 1.2407 1.0583 23.658 9 0 Median 1.0596 1.1094 NaN 1 0 Median 1.0952 0.93895 NaN 1 0 Median 129560000 61501000 68062000 0 0 0 4056700 1915600 2141100 97142000 46525000 50617000 14184000 6564400 7619400 13102000 5934700 7167800 1078500 561370 517130 2654 2335 2776 13694;13695;13696;13697;13698;13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712;13713;13714 14010;14011;14012;14013;14014;14015;14016;14017;14018 14010 9 AQALEDLAGFKELFQTR NLTGSKRRLQTPKEKAQALEDLAGFKELFQ ALEDLAGFKELFQTRGHTEESMTNDKTAKV K A Q T R G 3 1 0 1 0 2 2 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 17 1 1936.0054 P46013 P46013 1582 1598 MKI67 Antigen KI-67 yes yes 3 0.027074 16.494 By MS/MS 2 1.1728 1.3703 12.033 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1728 1.3703 12.033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2314300 969770 1344500 0 0 0 0 0 0 2314300 969770 1344500 0 0 0 0 0 0 0 0 0 2655 2335 2777 13715;13716 14019 14019 1 AQALEELTGFR NLPGSNRRLQTRKEKAQALEELTGFRELFQ RKEKAQALEELTGFRELFQTPCTDNPTTDE K A Q F R E 2 1 0 0 0 1 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1233.6354 P46013 P46013 1826 1836 MKI67 Antigen KI-67 yes yes 2 8.1536E-07 115.71 By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1.3454 1.2225 31.569 8 Median NaN NaN NaN 0 0 Median 1.4666 1.4237 28.619 3 0 Plateau 1.597 1.6641 NaN 1 0 Median 0.92212 0.93492 38.093 2 0 Median 1.2696 1.3088 NaN 1 0 Median 0.93 0.77442 NaN 1 0 Median 68479000 29475000 39005000 0 0 0 1963100 918190 1044900 55342000 23866000 31476000 1827700 943780 883920 8839500 3507900 5331600 506340 238420 267920 2656 2335 2778 13717;13718;13719;13720;13721;13722;13723;13724;13725 14020;14021;14022;14023;14024;14025 14022 6 AQALNEHLSTR PDYRSILSISDEAARAQALNEHLSTRSYVQ EAARAQALNEHLSTRSYVQGYSLSQADVDA R A Q T R S 2 1 1 0 0 1 1 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1238.6367 E9PLP0 E9PLP0 25 35 CARS yes yes 2;3 0.0022363 54.608 By MS/MS 2 1.0609 0.906 23.213 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0609 0.906 23.213 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1225300 624660 600610 0 0 0 0 0 0 0 0 0 1225300 624660 600610 0 0 0 0 0 0 2657 962 2779 13726;13727 14026;14027;14028 14027 3 AQALRDNSTMGYMAAK TSTYGWTANMERIMKAQALRDNSTMGYMAA QALRDNSTMGYMAAKKHLEINPDHSIIETL K A Q A K K 4 1 1 1 0 1 0 1 0 0 1 1 2 0 0 1 1 0 1 0 0 0 16 1 1726.8131 P07900 P07900 616 631 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.068974 9.788 By MS/MS By matching 1 1 1.1385 1.1554 1.0239 2 Median 1.135 1.1638 NaN 1 0 Median 1.142 1.1471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5026600 1881600 3144900 4421100 1639100 2781900 605510 242500 363000 0 0 0 0 0 0 0 0 0 0 0 0 2658 1894 2780 13728;13729 14029 14029 1 AQASGSAHSTPNLGHPEDSGVSAPAPGKEEGGPGPVSTPDNR KRKLREVQAEIGKLRAQASGSAHSTPNLGH KEEGGPGPVSTPDNRKEMAPVPGTTTTTTS R A Q N R K 5 1 2 2 0 1 3 7 2 0 1 1 0 0 7 6 2 0 0 2 0 0 42 1 4018.8641 O75150;H3BP71 O75150 520 561 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 5 0.028083 15.489 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3662200 3662200 0 0 0 0 0 0 0 2168800 2168800 0 1493500 1493500 0 0 0 0 0 0 0 2659 1648 2781 13730;13731 14030;14031 14031 2 AQASGSAHSTPNLGHPEDSGVSAPAPGKEEGGPGPVSTPDNRK KRKLREVQAEIGKLRAQASGSAHSTPNLGH EEGGPGPVSTPDNRKEMAPVPGTTTTTTSV R A Q R K E 5 1 2 2 0 1 3 7 2 0 1 2 0 0 7 6 2 0 0 2 0 0 43 2 4146.9591 O75150;H3BP71 O75150 520 562 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 5 0.00015964 32.137 By MS/MS By MS/MS 1 1 0.28995 0.33041 32.675 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23015 0.26225 NaN 1 1 Median 0.36528 0.4163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18160000 14863000 3296500 0 0 0 0 0 0 14760000 12549000 2211000 3399200 2313700 1085500 0 0 0 0 0 0 2660 1648 2782 13732;13733 14032;14033 14032 2 AQASLNAGLDLR RKFEPGTQRFELHKKAQASLNAGLDLRLAV HKKAQASLNAGLDLRLAVQLPPG_______ K A Q L R L 3 1 1 1 0 1 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1227.6571 K7EPX7;K7EKK6;K7ELS3;K7ESA9;Q96BX8 K7EPX7 35 46 MOB3A MOB kinase activator 3A yes no 2 0.0050499 61.353 By MS/MS 1 0.67508 0.63784 NaN 1 Median 0.67508 0.63784 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6064900 3571200 2493600 6064900 3571200 2493600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2661 1372 2783 13734 14034 14034 1 AQASSIPVGSR AQQEAEAAQRLAEEKAQASSIPVGSRCEVS AEEKAQASSIPVGSRCEVSQISSLATGLVS K A Q S R C 2 1 0 0 0 1 0 1 0 1 0 0 0 0 1 3 0 0 0 1 0 0 11 0 1071.5673 K7EK42;A0A494C0X0;Q99426;K7EP07 K7EK42 154 164 TBCB Tubulin-folding cofactor B yes no 2 0.00015601 82.287 By MS/MS By MS/MS 2 1 0.78796 0.66463 19.197 3 Median 0.80672 0.78358 23.285 2 0 Median 0.78796 0.66043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9428100 5194400 4233600 6609300 3774900 2834400 2818800 1419500 1399200 0 0 0 0 0 0 0 0 0 0 0 0 2662 462 2784 13735;13736;13737 14035;14036;14037;14038 14036 4 AQAVLEEDHYGMEDVK IPWGKYSNENLDLARAQAVLEEDHYGMEDV QAVLEEDHYGMEDVKKRILEFIAVSQLRGS R A Q V K K 2 0 0 2 0 1 3 1 1 0 1 1 1 0 0 0 0 0 1 2 0 0 16 0 1832.8251 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 369 384 LONP1 Lon protease homolog, mitochondrial yes no 3 0.0004472 38.093 By MS/MS By matching By MS/MS 1 1 1 1.2602 1.2201 31.954 3 Median 1.2602 1.2201 NaN 1 0 Median 1.6715 1.4689 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91756 0.7883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16306000 8292000 8014400 10618000 5472000 5146100 2162700 893080 1269600 0 0 0 3525600 1926900 1598700 0 0 0 0 0 0 2663 1370 2785 13738;13739;13740 14039;14040 14040 2 AQAVSEDAGGNEGR EAPGEQARDERSDSRAQAVSEDAGGNEGRA RAQAVSEDAGGNEGRAAEAEPRALENGDAD R A Q G R A 3 1 1 1 0 1 2 3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 14 0 1359.6015 P55884;C9JZG1 P55884 121 134 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 0.00018717 78.653 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1052 1.0765 19.243 5 Median 1.1164 1.1229 2.2007 2 0 Median 1.1487 0.96816 NaN 1 0 Median 1.0496 1.0765 NaN 1 0 Median 0.80319 0.71223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6991500 3097600 3893900 1163600 545620 618000 5511800 2419200 3092700 156990 61647 95340 159070 71208 87863 0 0 0 0 0 0 2664 2504 2786 13741;13742;13743;13744;13745 14041;14042;14043;14044 14044 4 AQAVSEEEEEEEGK KNPSSLFSKEAPKRKAQAVSEEEEEEEGKS KAQAVSEEEEEEEGKSSSPKKKIKLKKSKN K A Q G K S 2 0 0 0 0 1 7 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 14 0 1562.6584 G3V529;Q9GZR7 G3V529 35 48 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00020957 77.64 By MS/MS By matching By matching 1 1 1 1.1785 1.0373 8.2217 3 Median NaN NaN NaN 0 0 Median 1.3372 1.1766 NaN 1 0 Median 0.9537 1.0373 NaN 1 0 Median 1.1785 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4938400 2062100 2876300 0 0 0 1877200 579700 1297500 2738000 1356000 1382000 323210 126380 196830 0 0 0 0 0 0 2665 1118 2787 13746;13747;13748 14045 14045 1 AQAVTQPVPLANKPVPAQSTFPSK NWDQNVQSMETQIDKAQAVTQPVPLANKPV LANKPVPAQSTFPSKTGGMEGGTAVATSSL K A Q S K T 4 0 1 0 0 3 0 0 0 0 1 2 0 1 5 2 2 0 0 3 0 0 24 1 2475.3486 P49750;H0YIQ2 P49750 938 961 YLPM1 YLP motif-containing protein 1 yes no 3 5.2561E-20 87.468 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.4279 0.47372 9.4374 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38643 0.44754 8.0402 2 0 Median 0.53133 0.50203 1.0355 2 0 Median 0.40485 0.44456 8.819 2 0 Median 0.60667 0.54138 NaN 1 0 Median 99629000 69763000 29866000 0 0 0 0 0 0 55747000 39212000 16535000 2879000 1806300 1072700 39600000 27925000 11674000 1402600 819020 583540 2666 2395 2788 13749;13750;13751;13752;13753;13754;13755 14046;14047;14048;14049;14050;14051;14052;14053;14054;14055;14056 14046 11 AQAYQTGKDISTNYYASQK ASQYGWSGNMERIMKAQAYQTGKDISTNYY QTGKDISTNYYASQKKTFEINPRHPLIRDM K A Q Q K K 3 0 1 1 0 3 0 1 0 1 0 2 0 0 0 2 2 0 3 0 0 0 19 1 2136.0124 P14625;H0YIV0 P14625 664 682 HSP90B1 Endoplasmin yes no 2;3 1.1623E-18 115.15 By MS/MS 2 1.0627 1.1116 6.8665 2 Median 1.0627 1.1116 6.8665 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44560000 21455000 23105000 44560000 21455000 23105000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2667 2006 2789 13756;13757 14057;14058;14059 14058 3 AQCPIVER LPHSAGRYAAKRFRKAQCPIVERLTNSMMM AAKRFRKAQCPIVERLTNSMMMHGRNNGKK K A Q E R L 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 8 0 971.48585 M0R0F0;M0R0R2;P46782 M0R0F0 64 71 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.012958 53.968 By MS/MS 1 1.035 0.8791 NaN 1 Median NaN NaN NaN 0 0 Median 1.035 0.8791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1817600 845990 971620 0 0 0 1817600 845990 971620 0 0 0 0 0 0 0 0 0 0 0 0 2668 1425 2790 13758 14060;14061 14061 2 AQDEAFALQDVPLSSVVR GLVTLKHVYEIARIKAQDEAFALQDVPLSS EAFALQDVPLSSVVRSIIGSARSLGIRVVK K A Q V R S 3 1 0 2 0 2 1 0 0 0 2 0 0 1 1 2 0 0 0 3 0 0 18 0 1943.9953 Q9Y3B7;H0YCD5 Q9Y3B7 125 142 MRPL11 39S ribosomal protein L11, mitochondrial yes no 2 0.0016948 35.204 By MS/MS By matching By matching 1 1 1 0.90841 0.85036 11.453 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90841 0.85036 NaN 1 0 Median 0.87632 0.77174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1857 0.96958 NaN 1 0 Median 1941800 1012000 929870 0 0 0 0 0 0 1343800 714070 629710 213190 120240 92956 0 0 0 384870 177660 207200 2669 4416 2791 13759;13760;13761 14062 14062 1 AQDEGLLSDVVPFK EQDEYALRSHSLAKKAQDEGLLSDVVPFKV KAQDEGLLSDVVPFKVPGKDTVTKDNGIRP K A Q F K V 1 0 0 2 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 14 0 1516.7773 P55084;F5GZQ3 P55084 255 268 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0026176 42.001 By matching By MS/MS 1 1 0.68512 0.67733 34.77 2 Median 0.53707 0.52969 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87399 0.86612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3730000 1762800 1967200 528040 255610 272430 0 0 0 3202000 1507200 1694800 0 0 0 0 0 0 0 0 0 2670 2496 2792 13762;13763 14063;14064 14064 2 AQDLPLKK PDPPSAAILVVYLDRAQDLPLKKGNKEPNP LVVYLDRAQDLPLKKGNKEPNPMVQLSIQD R A Q K K G 1 0 0 1 0 1 0 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 8 1 911.54402 Q9BSJ8 Q9BSJ8 487 494 ESYT1 Extended synaptotagmin-1 yes yes 2 0.024603 48.756 By MS/MS 1 1.2187 1.1421 NaN 1 Median NaN NaN NaN 0 0 Median 1.2187 1.1421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467500 617540 849960 0 0 0 1467500 617540 849960 0 0 0 0 0 0 0 0 0 0 0 0 2671 3816 2793 13764 14065 14065 1 AQDLSNLENTVAALK QDLQLDQGNQKDFIKAQDLSNLENTVAALK AQDLSNLENTVAALKSEFQKTLNDKTENQK K A Q L K S 3 0 2 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 15 0 1585.8312 Q9NQ48;H7C488 Q9NQ48 205 219 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 2 3.5766E-07 79.82 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 0.86025 0.76071 20.1 6 Median 0.90923 0.86342 NaN 1 0 Median 0.94646 0.79537 NaN 1 0 Median 0.62298 0.61281 24.273 2 0 Median 0.93503 0.78589 18.94 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20344000 10377000 9966300 5558500 2641200 2917300 7265000 3503900 3761100 5673000 3316500 2356500 1847300 915730 931540 0 0 0 0 0 0 2672 4059 2794 13765;13766;13767;13768;13769;13770;13771 14066;14067;14068;14069 14068 4 AQDPDQLR PEAPYIYALLSRLFRAQDPDQLRQHALAEG LLSRLFRAQDPDQLRQHALAEGLTEEEYQA R A Q L R Q 1 1 0 2 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 8 0 941.45666 G3V1D3;G3V180;Q9NY33;E9PPK9;E9PKK8;E9PQF2 G3V1D3 88 95 DPP3 Dipeptidyl peptidase 3 yes no 2 0.012659 54.549 By matching By MS/MS 1 1 1.0396 0.966 3.1092 2 Median 0.99384 0.98748 NaN 1 0 Median 1.0874 0.945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3246800 1527600 1719200 1149800 564190 585590 2097000 963420 1133600 0 0 0 0 0 0 0 0 0 0 0 0 2673 1102 2795 13772;13773 14070;14071 14070 2 AQDQGEKENPMR ______________________________ ______________________________ M A Q M R E 1 1 1 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 12 1 1401.6307 P62913 P62913 2 13 RPL11 60S ribosomal protein L11 yes yes 2 1.5858E-06 119.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 0.93146 0.90105 7.7111 7 Median 0.86527 0.88204 6.9941 2 0 Median 0.9512 0.86388 5.9571 2 0 Median 0.93146 0.96587 NaN 1 0 Median 1.0953 0.96957 NaN 1 0 Median 0.71286 0.80019 NaN 1 0 Median NaN NaN NaN 0 0 Median 21369000 10494000 10875000 9328600 4597200 4731400 4728300 2376000 2352300 5193800 2445000 2748900 1289000 525810 763220 829330 549650 279680 0 0 0 2674 2609 2796 13774;13775;13776;13777;13778;13779;13780 14072;14073;14074;14075;14076;14077;14078;14079;14080;14081;14082;14083 14075 12 AQDSSLHMPER DLDSLVDFSTNNQKKAQDSSLHMPERAVFR NQKKAQDSSLHMPERAVFRLRKWIIFRLVS K A Q E R A 1 1 0 1 0 1 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 11 0 1269.5772 Q9BQG0;I3L1L3 Q9BQG0 433 443 MYBBP1A Myb-binding protein 1A yes no 3 0.029487 21.631 By matching By MS/MS 1 1 1.3568 1.4517 4.8611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.282 1.4026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.436 1.5024 NaN 1 0 Median NaN NaN NaN 0 0 Median 4138600 1741500 2397100 0 0 0 0 0 0 2250100 1041400 1208700 0 0 0 1888500 700060 1188400 0 0 0 2675 3789 2797 13781;13782 14084 14084 1 AQDTFQTIEGIIR AQFTVLSKLRTPLGRAQDTFQTIEGIIRSL GRAQDTFQTIEGIIRSLAAHTLNPDQDVSQ R A Q I R S 1 1 0 1 0 2 1 1 0 3 0 0 0 1 0 0 2 0 0 0 0 0 13 0 1490.7729 J3KRA9;Q96Q15;H3BQN7;I3L144 J3KRA9 826 838 SMG1 Serine/threonine-protein kinase SMG1 yes no 2 0.00025148 91.03 By MS/MS 1 0.99889 1.0035 NaN 1 Median 0.99889 1.0035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4356700 2228600 2128000 4356700 2228600 2128000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2676 1325 2798 13783 14085 14085 1 AQDVLVQEMEVVK EHNPYEKFSKEELKKAQDVLVQEMEVVKQG KKAQDVLVQEMEVVKQGMSHGELSSEAYNQ K A Q V K Q 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 4 0 0 13 0 1486.7701 Q99459 Q99459 632 644 CDC5L Cell division cycle 5-like protein yes yes 2 6.2264E-07 105.46 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.87003 0.87545 17.901 4 Median 0.95276 0.94467 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96503 1.0471 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79448 0.8113 NaN 1 0 Median 0.74871 0.69518 NaN 1 0 Median 33313000 17979000 15334000 2605600 1218200 1387400 0 0 0 18380000 9750600 8628900 0 0 0 12228000 6950200 5277500 100110 59606 40504 2677 3745 2799 13784;13785;13786;13787 14086;14087;14088;14089 14087 4 AQEDILK IYVRHSNLMLEELDKAQEDILKHQASISEL LMLEELDKAQEDILKHQASISELKRNFMES K A Q L K H 1 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 815.43888 O43491;Q6ZSX4;H0Y5B0;Q6R5J7;E9PMV8;E9PN54;E9PMG5 O43491 637 643 EPB41L2 Band 4.1-like protein 2 yes no 2 0.040795 44.692 By MS/MS 1 1.5281 1.3092 NaN 1 Median NaN NaN NaN 0 0 Median 1.5281 1.3092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1248400 477120 771250 0 0 0 1248400 477120 771250 0 0 0 0 0 0 0 0 0 0 0 0 2678 1573 2800 13788 14090 14090 1 AQEEAERLEADR EQIQRALQLEEERKRAQEEAERLEADRMAA RKRAQEEAERLEADRMAALRAKEELERQAV R A Q D R M 3 2 0 1 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 12 1 1415.6641 P15311;E7EQR4 P15311 382 393 EZR Ezrin yes no 2;3 1.9972E-06 152.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 4 2 1.111 1.1025 21.824 16 Median 1.0661 1.0931 36.828 3 0 Median 1.058 1.0029 12.702 4 0 Median 1.1342 1.2699 4.0801 3 0 Plateau 1.1421 1.0378 4.4219 4 0 Median 1.3624 1.4803 11.569 2 0 Median NaN NaN NaN 0 0 Median 166630000 75781000 90845000 50104000 23998000 26106000 19588000 8655900 10932000 76392000 34723000 41669000 13248000 5742700 7505400 7294100 2661200 4632900 0 0 0 2679 879 2801 13789;13790;13791;13792;13793;13794;13795;13796;13797;13798;13799;13800;13801;13802;13803;13804 14091;14092;14093;14094;14095;14096;14097;14098;14099;14100;14101;14102;14103;14104;14105;14106;14107 14096 17 AQEEAKEAEMSR FVKESKQKMNARKRRAQEEAKEAEMSRKEL KRRAQEEAKEAEMSRKELGLDEGVDSLKAA R A Q S R K 3 1 0 0 0 1 4 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 12 1 1377.6194 Q8WXX5 Q8WXX5 193 204 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 3 0.067762 13.404 By MS/MS 1 1.0456 0.98675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0456 0.98675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 417120 193130 224000 0 0 0 0 0 0 0 0 0 417120 193130 224000 0 0 0 0 0 0 2680 3522 2802 13805 14108 14108 1 AQEESTGLLSGLR PQAAVALWVKKEFSKAQEESTGLLSGLRIW SKAQEESTGLLSGLRIWHTQLLPGGLQGLI K A Q L R I 1 1 0 0 0 1 2 2 0 0 3 0 0 0 0 2 1 0 0 0 0 0 13 0 1359.6994 Q92759;A0A0G2JHJ2 Q92759 82 94 GTF2H4 General transcription factor IIH subunit 4 yes no 2 1.9396E-06 110.39 By MS/MS 1 0.73786 0.72197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73786 0.72197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23098000 12872000 10226000 0 0 0 0 0 0 23098000 12872000 10226000 0 0 0 0 0 0 0 0 0 2681 3553 2803 13806 14109 14109 1 AQEFVNCK ______________________________ ______________________________ M A Q C K I 1 0 1 0 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 994.45422 P35754 P35754 2 9 GLRX Glutaredoxin-1 yes yes 2 0.023607 44.447 By matching By MS/MS 1 1 0.86513 0.76572 46.423 2 Median 0.58379 0.55145 NaN 1 0 Median 1.2821 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1721900 838800 883100 455150 266390 188750 1266800 572410 694350 0 0 0 0 0 0 0 0 0 0 0 0 2682 2250 2804 13807;13808 14110 14110 1 AQEGWFSLSGSELR RLGRLPYKAGLSLQRAQEGWFSLSGSELRA RAQEGWFSLSGSELRAVFPEGPCEEPLQLR R A Q L R A 1 1 0 0 0 1 2 2 0 0 2 0 0 1 0 3 0 1 0 0 0 0 14 0 1565.7474 E7EU13;Q96P48;A0A0A0MSJ2;F8WBT0;F5GWN4 E7EU13 634 647 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 2 0.00039186 71.555 By MS/MS By matching 1 1 1.05 0.96454 12.749 2 Median 0.92164 0.8814 NaN 1 0 Median 1.1962 1.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5368900 2707800 2661100 4904500 2493200 2411400 464350 214650 249690 0 0 0 0 0 0 0 0 0 0 0 0 2683 893 2805 13809;13810 14111 14111 1 AQEIDGQALLLLK IRSLPGCQEIAEEFRAQEIDGQALLLLKED FRAQEIDGQALLLLKEDHLMSAMNIKLGPA R A Q L K E 2 0 0 1 0 2 1 1 0 1 4 1 0 0 0 0 0 0 0 0 0 0 13 0 1410.8082 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 818 830 PHC2 Polyhomeotic-like protein 2 no no 2 0.0014003 54.416 By MS/MS By matching By matching 3 1 3 0.9712 0.93422 30.946 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9712 1.0039 21.74 3 0 Median 1.1105 0.93422 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76734 0.64671 46.306 3 0 Median 16172000 8016300 8155800 0 0 0 0 0 0 13752000 6760900 6991500 852320 387480 464850 0 0 0 1567300 867940 699380 2684 180 2806 13811;13812;13813;13814;13815;13816;13817 14112;14113 14112 2 AQEILSQLPIK KVVVFIKPTCPYCRRAQEILSQLPIKQGLL YCRRAQEILSQLPIKQGLLEFVDITATNHT R A Q I K Q 1 0 0 0 0 2 1 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1238.7234 P35754 P35754 29 39 GLRX Glutaredoxin-1 yes yes 2 0.00016938 107.15 By MS/MS By MS/MS By MS/MS 1 2 1 1.0354 0.92132 5.1304 4 Median 0.97346 0.87861 NaN 1 0 Median 1.1156 0.92132 3.188 2 0 Median 0.97109 0.987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55493000 26977000 28515000 41361000 19979000 21382000 11119000 5517900 5601400 3012800 1480200 1532600 0 0 0 0 0 0 0 0 0 2685 2250 2807 13818;13819;13820;13821 14114;14115;14116;14117;14118;14119;14120;14121 14117 8 AQELGHSQSALASAQR RDSALETLQGQLEEKAQELGHSQSALASAQ QELGHSQSALASAQRELAAFRTKVQDHSKA K A Q Q R E 4 1 0 0 0 3 1 1 1 0 2 0 0 0 0 3 0 0 0 0 0 0 16 0 1652.823 A0A087WY61;Q14980 Q14980 1175 1190 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 3.983E-11 150.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 3 3 3 1.0706 0.95928 18.351 17 Median 1.3771 1.3794 NaN 1 0 Median 1.1252 0.95748 14.881 3 1 Median 0.97483 1.0806 29.778 4 0 Median 1.1322 1.0003 13.935 3 0 Median 0.91418 0.92203 4.3647 3 0 Plateau 1.178 0.95928 13.029 3 0 Median 272910000 135310000 137610000 2053600 828070 1225600 17273000 8134700 9138200 93191000 46826000 46365000 18335000 8236400 10099000 90116000 46802000 43314000 51944000 24479000 27465000 2686 2905;77 2808 13822;13823;13824;13825;13826;13827;13828;13829;13830;13831;13832;13833;13834;13835;13836;13837;13838 14122;14123;14124;14125;14126;14127;14128;14129;14130;14131;14132;14133;14134;14135;14136;14137;14138;14139;14140;14141;14142;14143;14144;14145;14146;14147;14148;14149;14150;14151;14152 14149 31 AQELIQATNQILSHR LLFKMEEANLASRAKAQELIQATNQILSHR AQELIQATNQILSHRKPPSSLGMTPAPVPT K A Q H R K 2 1 1 0 0 3 1 0 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1720.922 Q9H7N4 Q9H7N4 1124 1138 SCAF1 Splicing factor, arginine/serine-rich 19 yes yes 3 0.00010952 60.209 By MS/MS 1 1.2698 1.3235 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2698 1.3235 NaN 1 1 Median NaN NaN NaN 0 0 Median 5762600 2560900 3201700 0 0 0 0 0 0 0 0 0 0 0 0 5762600 2560900 3201700 0 0 0 2687 3983 2809 13839 14153 14153 1 AQENYEGSEEVSPPQTK PAAHHMNNPQRTGQRAQENYEGSEEVSPPQ ENYEGSEEVSPPQTKDQ_____________ R A Q T K D 1 0 1 0 0 2 4 1 0 0 0 1 0 0 2 2 1 0 1 1 0 0 17 0 1891.8436 Q93008 Q93008 2552 2568 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 3.2481E-13 147.18 By MS/MS 1 0.8651 0.75926 NaN 1 Median NaN NaN NaN 0 0 Median 0.8651 0.75926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7616500 3708200 3908400 0 0 0 7616500 3708200 3908400 0 0 0 0 0 0 0 0 0 0 0 0 2688 3573 2810 13840 14154;14155 14155 2 AQEPESGLSEETQVK DYVAVARGSKDHNIRAQEPESGLSEETQVK AQEPESGLSEETQVKCLMDQATDPNILGRT R A Q V K C 1 0 0 0 0 2 4 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 15 0 1630.7686 P78527 P78527 4091 4105 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.8658E-10 140.24 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 4 1 1 0.94834 0.90558 12.836 8 Median NaN NaN NaN 0 0 Median 1.1059 0.98379 NaN 1 0 Median 0.75387 0.80763 6.2168 3 2 Median 1.1518 1.0922 9.1053 2 0 Median 0.81596 0.85434 NaN 1 0 Median 1.1022 0.91817 NaN 1 0 Median 71351000 34356000 36995000 0 0 0 15484000 6892500 8591700 38046000 18784000 19263000 10612000 4637500 5974700 6362900 3578600 2784400 844930 463290 381640 2689 2647 2811 13841;13842;13843;13844;13845;13846;13847;13848;13849;13850 14156;14157;14158;14159;14160;14161;14162;14163;14164;14165;14166;14167;14168;14169;14170;14171;14172;14173;14174;14175;14176;14177;14178;14179 14175 24 AQEPSAAIPK HAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ FKEGKAQEPSAAIPKVMQQQQQTTQQQLPQ K A Q P K V 3 0 0 0 0 1 1 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 10 0 1010.5397 Q15459 Q15459 106 115 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.071385 25.559 By MS/MS 1 1.2706 1.0706 NaN 1 Median NaN NaN NaN 0 0 Median 1.2706 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22858000 9454700 13404000 0 0 0 22858000 9454700 13404000 0 0 0 0 0 0 0 0 0 0 0 0 2690 2954 2812 13851 14180;14181 14180 2 AQEQQQQMAELHSK HTQSSHASLRADAEKAQEQQQQMAELHSKL KAQEQQQQMAELHSKLQSSEAEVRSKCEEL K A Q S K L 2 0 0 0 0 5 2 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 14 0 1654.7733 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 908 921 RRBP1 Ribosome-binding protein 1 yes no 3 0.00024884 55.66 By matching By MS/MS By matching 2 1 1 1.3414 1.2549 24.085 4 Median 1.129 1.1134 35.33 2 0 Median 1.2747 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7022 1.4331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5173700 2374200 2799500 995630 434530 561110 3520500 1706500 1814000 0 0 0 657550 233120 424430 0 0 0 0 0 0 2691 4222 2813 13852;13853;13854;13855 14182;14183 14182 2 AQESVGIYEVTHQFVK DINLQEKDWTDYDEKAQESVGIYEVTHQFV QESVGIYEVTHQFVKC______________ K A Q V K C 1 0 0 0 0 2 2 1 1 1 0 1 0 1 0 1 1 0 1 3 0 0 16 0 1833.9261 Q9NWV4 Q9NWV4 144 159 C1orf123 UPF0587 protein C1orf123 yes yes 2;3 0.00018939 48.741 By MS/MS By matching By matching 2 2 1 0.97382 0.90499 19.457 5 Median 0.90695 0.8425 10.118 2 0 Median 1.1794 1.0193 29.801 2 0 Median 1.1294 1.0679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25419000 13515000 11904000 23771000 12649000 11122000 649140 299790 349360 999410 566600 432810 0 0 0 0 0 0 0 0 0 2692 4152 2814 13856;13857;13858;13859;13860 14184;14185 14184 2 AQETEAAPSQAPADEPEPESAAAQSQENQDTRPK TKKVSHVADTKVNTKAQETEAAPSQAPADE SAAAQSQENQDTRPKVKAKKARKVKHLDGE K A Q P K V 8 1 1 2 0 5 6 0 0 0 0 1 0 0 5 3 2 0 0 0 0 0 34 1 3577.6041 Q9UNF1;Q5H909;Q5H907 Q9UNF1 138 171 MAGED2 Melanoma-associated antigen D2 yes no 3;4 0.0075266 19.375 By MS/MS By matching By matching 3 1 1 0.37187 0.37173 19.829 5 Median 0.31766 0.32495 17.733 3 0 Median 0.4976 0.45554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42578 0.37173 NaN 1 0 Median 16550000 11844000 4705700 11101000 8160800 2940100 4118900 2764300 1354600 0 0 0 0 0 0 0 0 0 1330200 919120 411050 2693 4343 2815 13861;13862;13863;13864;13865 14186;14187 14187 2 AQEVSEYLSQNPR ______________________________ ______________________________ M A Q P R V 1 1 1 0 0 2 2 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 13 0 1519.7267 Q9NXV6;J3KNE1;D6RGD2 Q9NXV6 2 14 CDKN2AIP CDKN2A-interacting protein yes no 2 0.0011681 58.676 By matching By MS/MS By matching 1 1 1 0.96252 0.99344 2.4855 2 Median 0.99742 1.0111 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92884 0.97613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5656600 2949200 2707400 1006200 434340 571840 0 0 0 4542700 2454700 2088000 107680 60123 47558 0 0 0 0 0 0 2694 4169 2816 13866;13867;13868 14188 14188 1 AQEYDSSFPNWEFAR REEKKAQNSEMRMKRAQEYDSSFPNWEFAR AQEYDSSFPNWEFARMIKEFRATLECHPLT R A Q A R M 2 1 1 1 0 1 2 0 0 0 0 0 0 2 1 2 0 1 1 0 0 0 15 0 1845.7958 Q99661;Q5JR89;Q5JR91 Q99661 220 234 KIF2C Kinesin-like protein KIF2C;Kinesin-like protein yes no 2 0.0091619 53.528 By MS/MS By matching 1 2 0.86386 0.89639 16.408 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86386 0.92057 NaN 1 0 Median 0.92025 0.78321 19.088 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1282600 695270 587340 0 0 0 0 0 0 988100 548430 439670 294510 146840 147670 0 0 0 0 0 0 2695 3761 2817 13869;13870;13871 14189 14189 0 AQFAQPEILIGTIPGAGGTQR CELAMMCDIIYAGEKAQFAQPEILIGTIPG EILIGTIPGAGGTQRLTRAVGKSLAMEMVL K A Q Q R L 3 1 0 0 0 3 1 4 0 3 1 0 0 1 2 0 2 0 0 0 0 0 21 0 2124.1328 P30084 P30084 158 178 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 1.5294E-46 202.4 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 5 2 1 3 0.8842 0.8187 33.976 14 Median 0.71236 0.70228 3.4206 3 0 Median 1.0359 0.87597 32.709 5 1 Median 0.74374 0.71422 7.981 2 0 Median 1.1578 0.95006 NaN 1 0 Median 1.5428 1.5363 41.603 3 1 Median NaN NaN NaN 0 0 Median 167940000 91320000 76624000 124060000 68873000 55188000 17922000 9299800 8622500 14050000 7994400 6056000 400450 175400 225050 11509000 4977200 6532300 0 0 0 2696 2186 2818 13872;13873;13874;13875;13876;13877;13878;13879;13880;13881;13882;13883;13884;13885 14190;14191;14192;14193;14194;14195;14196;14197;14198;14199;14200;14201;14202;14203;14204 14193 15 AQFEGIVTDLIR MDSSGPKHLNMKLTRAQFEGIVTDLIRRTI LTRAQFEGIVTDLIRRTIAPCQKAMQDAEV R A Q I R R 1 1 0 1 0 1 1 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1360.7351 P38646;H0YBG6 P38646 349 360 HSPA9 Stress-70 protein, mitochondrial yes no 2 3.6978E-06 145.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 2 2 3 3 1.4004 1.2281 27.946 19 Median 1.1958 1.1396 3.4901 3 0 Median 1.389 1.1823 24.785 6 1 Median 0.91779 0.93373 47.513 2 0 Median 1.4563 1.2469 2.1463 2 0 Median 1.9453 1.9756 3.1817 3 0 Median 1.6679 1.4304 11.694 3 1 Plateau 412160000 172380000 239790000 112040000 51246000 60791000 241540000 98616000 142930000 16502000 7344700 9157500 2773800 1081200 1692600 9614900 3451300 6163600 29693000 10637000 19056000 2697 2277 2819 13886;13887;13888;13889;13890;13891;13892;13893;13894;13895;13896;13897;13898;13899;13900;13901;13902;13903;13904 14205;14206;14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217;14218;14219;14220;14221;14222;14223;14224;14225;14226;14227;14228;14229;14230;14231 14208 27 AQFEGIVTDLIRR MDSSGPKHLNMKLTRAQFEGIVTDLIRRTI TRAQFEGIVTDLIRRTIAPCQKAMQDAEVS R A Q R R T 1 2 0 1 0 1 1 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 13 1 1516.8362 P38646;H0YBG6 P38646 349 361 HSPA9 Stress-70 protein, mitochondrial yes no 2;3 0.00072772 77.677 By MS/MS 2 1.2046 1.1868 34.224 2 Median 1.2046 1.1868 34.224 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20793000 8634400 12158000 20793000 8634400 12158000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2698 2277 2820 13905;13906 14232;14233 14233 2 AQFFLHLSPSHYALLQYHYGTLSLLK PRVLPTQPNPVDASRAQFFLHLSPSHYALL YALLQYHYGTLSLLKNFPQTALVSFATTGE R A Q L K N 2 0 0 0 0 2 0 1 3 0 7 1 0 2 1 3 1 0 3 0 0 0 26 0 3046.6069 Q8N766 Q8N766 289 314 EMC1 ER membrane protein complex subunit 1 yes yes 4 0.0027053 24.644 By MS/MS 1 1.122 0.98717 NaN 1 Median NaN NaN NaN 0 0 Median 1.122 0.98717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1935200 885230 1050000 0 0 0 1935200 885230 1050000 0 0 0 0 0 0 0 0 0 0 0 0 2699 3392 2821 13907 14234 14234 1 AQFFVEDASTASALK SVPFTPIEFHYENTRAQFFVEDASTASALK AQFFVEDASTASALKAVNYKILDRENRRIS R A Q L K A 4 0 0 1 0 1 1 0 0 0 1 1 0 2 0 2 1 0 0 1 0 0 15 0 1583.7831 Q9UBU9;E9PIN3;B4E227;E9PLA7 Q9UBU9 159 173 NXF1 Nuclear RNA export factor 1 yes no 2 4.0025E-19 117.23 By MS/MS By MS/MS 2 2 1.1249 1.126 15.631 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1249 1.126 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0746 1.0676 21.673 2 2 Median NaN NaN NaN 0 0 Median 27522000 12241000 15281000 0 0 0 0 0 0 20072000 8830900 11242000 0 0 0 7449300 3409800 4039400 0 0 0 2700 4249 2822 13908;13909;13910;13911 14235;14236;14237;14238 14236 4 AQFLQNLLLPQAK EPVVLRDVRTACTLRAQFLQNLLLPQAKRG LRAQFLQNLLLPQAKRGSLPTPHDDHFGTS R A Q A K R 2 0 1 0 0 3 0 0 0 0 4 1 0 1 1 0 0 0 0 0 0 0 13 0 1482.8558 O94927 O94927 196 208 HAUS5 HAUS augmin-like complex subunit 5 yes yes 2 0.040448 25.938 By MS/MS By matching 1 1 1.0304 0.90293 12.687 2 Median NaN NaN NaN 0 0 Median 0.95228 0.82546 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.115 0.98768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1210100 556300 653820 0 0 0 1140300 518380 621960 0 0 0 69780 37917 31863 0 0 0 0 0 0 2701 1739 2823 13912;13913 14239 14239 1 AQFLVEK AAVEAKQVAQQEAQRAQFLVEKAKQEQRQK VAQQEAQRAQFLVEKAKQEQRQKIVQAEGE R A Q E K A 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 833.4647 J3KPX7;Q99623;F5GY37;F5GWA7 J3KPX7 210 216 PHB2 Prohibitin-2 yes no 2 0.016334 68.915 By MS/MS By MS/MS By MS/MS 1 1 1 0.91547 0.76794 220.05 3 Median 0.24635 0.22366 NaN 1 0 Median 0.91547 0.76794 NaN 1 0 Median NaN NaN NaN 0 0 Median 19.339 16.084 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107630000 32027000 75601000 25454000 18942000 6511200 20369000 9944100 10425000 0 0 0 61805000 3140200 58665000 0 0 0 0 0 0 2702 1313 2824 13914;13915;13916 14240;14241;14242;14243 14241 4 AQGAGVTLPPTPSGSR TAGSLESTEPIYVYKAQGAGVTLPPTPSGS QGAGVTLPPTPSGSRTKQRLPGQKPFKRSL K A Q S R T 2 1 0 0 0 1 0 3 0 0 1 0 0 0 3 2 2 0 0 1 0 0 16 0 1494.7791 Q6P996;H3BND4 Q6P996 681 696 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.00012379 66.262 By MS/MS By MS/MS 1 1 0.52845 0.49087 19.432 2 Median 0.57339 0.56317 NaN 1 0 Median 0.48704 0.42785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968400 2639600 1328800 2463500 1637000 826560 1504900 1002700 502230 0 0 0 0 0 0 0 0 0 0 0 0 2703 3164 2825 13917;13918 14244;14245;14246 14245 3 AQGAIAMASIAK TITQKALQSQSWKMKAQGAIAMASIAKQTS KMKAQGAIAMASIAKQTSSLVPPYLGMILT K A Q A K Q 5 0 0 0 0 1 0 1 0 2 0 1 1 0 0 1 0 0 0 0 0 0 12 0 1130.6118 Q5VYK3;J3KN16;F6XAQ5 Q5VYK3 1545 1556 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.00018773 85.958 By MS/MS By MS/MS 1 3 1.3555 1.2637 40.419 3 Plateau 1.4341 1.3861 NaN 1 1 Median 0.91412 0.80424 35.944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21482000 9411500 12070000 12201000 4500100 7701400 9280500 4911400 4369100 0 0 0 0 0 0 0 0 0 0 0 0 2704 3116 2826 13919;13920;13921;13922 14247;14248;14249 14249 3 AQGISAEPQTYR VLPVPSTHIGPRTTRAQGISAEPQTYRSFH TTRAQGISAEPQTYRSFHDLRQAFRKFTKS R A Q Y R S 2 1 0 0 0 2 1 1 0 1 0 0 0 0 1 1 1 0 1 0 0 0 12 0 1319.647 Q13976 Q13976 61 72 PRKG1 cGMP-dependent protein kinase 1 yes yes 2 0.022372 31.76 By MS/MS 1 1.1785 1.0131 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1785 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29269000 12648000 16621000 0 0 0 0 0 0 0 0 0 29269000 12648000 16621000 0 0 0 0 0 0 2705 2849 2827 13923 14250 14250 1 AQGMPEGGGALAEGFQVR FFVSAKEVLNARIQKAQGMPEGGGALAEGF MPEGGGALAEGFQVRMFEFQNFERRFEECI K A Q V R M 3 1 0 0 0 2 2 5 0 0 1 0 1 1 1 0 0 0 0 1 0 0 18 0 1773.8468 O95140 O95140 317 334 MFN2 Mitofusin-2 yes yes 2 8.454E-06 64.65 By MS/MS 1 0.37311 0.35394 NaN 1 Median 0.37311 0.35394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7051300 4987500 2063800 7051300 4987500 2063800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2706 1747 2828 13924 14251 14251 1 AQGPAASAEEPKPVEAPAANSDQTVTVK KETPAATEAPSSTPKAQGPAASAEEPKPVE VEAPAANSDQTVTVKE______________ K A Q V K E 7 0 1 1 0 2 3 1 0 0 0 2 0 0 4 2 2 0 0 3 0 0 28 1 2762.3723 P80723 P80723 199 226 BASP1 Brain acid soluble protein 1 yes yes 3 6.165E-09 43.206 By MS/MS By MS/MS 1 1 0.48877 0.49984 31.872 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38134 0.39898 NaN 1 0 Median 0.62646 0.62619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10809000 6971700 3837600 0 0 0 0 0 0 6349700 4402200 1947500 4459500 2569400 1890100 0 0 0 0 0 0 2707 2649 2829 13925;13926 14252;14253;14254 14253 3 AQGPAASAEEPKPVEAPAANSDQTVTVKE KETPAATEAPSSTPKAQGPAASAEEPKPVE EAPAANSDQTVTVKE_______________ K A Q K E - 7 0 1 1 0 2 4 1 0 0 0 2 0 0 4 2 2 0 0 3 0 0 29 2 2891.4149 P80723 P80723 199 227 BASP1 Brain acid soluble protein 1 yes yes 3;4 1.4538E-14 70.889 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 0.44586 0.48037 19.272 10 Median 0.44508 0.41984 3.589 2 1 Median 0.64573 0.60542 15.922 2 0 Median 0.38464 0.40104 2.4479 2 1 Median 0.65294 0.65266 NaN 1 0 Median 0.43929 0.48037 3.8989 2 1 Median 0.59066 0.52643 NaN 1 0 Median 200110000 145310000 54793000 44333000 33634000 10699000 9783100 5723600 4059500 59907000 47849000 12058000 32988000 18642000 14346000 52053000 38785000 13268000 1042200 679040 363190 2708 2649 2830 13927;13928;13929;13930;13931;13932;13933;13934;13935;13936 14255;14256;14257;14258;14259;14260;14261;14262;14263;14264;14265;14266 14258 12 AQGQTGVLTVHSYAK SISSDSETSEPLSCRAQGQTGVLTVHSYAK AQGQTGVLTVHSYAKGDGRVTVGEPCTRKK R A Q A K G 2 0 0 0 0 2 0 2 1 0 1 1 0 0 0 1 2 0 1 2 0 0 15 0 1558.8104 O75164 O75164 535 549 KDM4A Lysine-specific demethylase 4A yes yes 3 0.033038 25.319 By MS/MS 1 1.1859 1.279 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1859 1.279 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2140900 1230900 910040 0 0 0 0 0 0 2140900 1230900 910040 0 0 0 0 0 0 0 0 0 2709 1652 2831 13937 14267 14267 1 AQGWAPLKPLPPSAKDPAQAPQA TVLAEVPTQLVSYFRAQGWAPLKPLPPSAK PLPPSAKDPAQAPQA_______________ R A Q Q A - 6 0 0 1 0 3 0 1 0 0 2 2 0 0 6 1 0 1 0 0 0 0 23 2 2338.2434 Q99829;B0QZ18;A6PVH9 Q99829 515 537 CPNE1 Copine-1 yes no 3 0.00015893 27.081 By MS/MS 1 0.28993 0.27053 NaN 1 Median 0.28993 0.27053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25189000 18844000 6345200 25189000 18844000 6345200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2710 559 2832 13938 14268;14269;14270 14268 3 AQHEDQVEQYK REFESRLADALQELRAQHEDQVEQYKKELE QELRAQHEDQVEQYKKELEKTYSAKLDNAR R A Q Y K K 1 0 0 1 0 3 2 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1373.6212 P02545;H0YAB0;Q3BDU5 P02545 250 260 LMNA Prelamin-A/C;Lamin-A/C no no 3 0.042404 17.739 By MS/MS By matching By matching By matching 1 1 1 1 1.1569 1.105 21.097 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0959 1.1657 NaN 1 0 Median 1.2214 1.0474 NaN 1 0 Median 1.3104 1.266 NaN 1 0 Median 0.91354 0.78099 NaN 1 0 Median 4286700 1872500 2414100 0 0 0 0 0 0 3016300 1351500 1664800 354630 135150 219480 639280 261490 377790 276410 124370 152040 2711 1834;3010 2833 13939;13940;13941;13942 14271 14271 1 AQHEDQVEQYKK REFESRLADALQELRAQHEDQVEQYKKELE ELRAQHEDQVEQYKKELEKTYSAKLDNARQ R A Q K K E 1 0 0 1 0 3 2 0 1 0 0 2 0 0 0 0 0 0 1 1 0 0 12 1 1501.7161 P02545;H0YAB0;Q3BDU5 P02545 250 261 LMNA Prelamin-A/C;Lamin-A/C no no 3 0.00014854 66.267 By MS/MS By matching By MS/MS By MS/MS 2 2 4 3 1.0694 1.161 9.2189 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1267 1.2235 4.6874 2 0 Median 1.1991 1.1389 18.186 2 0 Median 1.0323 1.0839 4.2871 4 0 Median 1.4231 1.2683 5.6682 3 0 Median 35415000 16630000 18785000 0 0 0 0 0 0 12069000 5731000 6337500 593800 266710 327080 20614000 9738900 10875000 2139100 893550 1245600 2712 1834;3010 2834 13943;13944;13945;13946;13947;13948;13949;13950;13951;13952;13953 14272;14273;14274;14275;14276;14277;14278;14279 14275 8 AQHPDYSFGELSR SGYILFSSEMRAVIKAQHPDYSFGELSRLV IKAQHPDYSFGELSRLVGTEWRNLETAKKA K A Q S R L 1 1 0 1 0 1 1 1 1 0 1 0 0 1 1 2 0 0 1 0 0 0 13 0 1505.6899 Q86U86;E7EVG2 Q86U86 1399 1411 PBRM1 Protein polybromo-1 yes no 2;3 1.5308E-05 87.18 By matching By MS/MS By MS/MS By matching By matching 1 2 3 1 1 1.1055 0.9739 32.707 8 Median NaN NaN NaN 0 0 Median 1.0841 0.95698 NaN 1 0 Median 0.67927 0.74039 24.976 2 1 Median 1.381 1.2161 28.187 3 0 Median 0.62439 0.65598 NaN 1 0 Median 1.1899 0.99111 NaN 1 0 Median 65981000 35051000 30930000 0 0 0 454710 193320 261390 54435000 29445000 24990000 7216300 3124100 4092100 3360200 2035800 1324400 514960 252380 262580 2713 3273 2835 13954;13955;13956;13957;13958;13959;13960;13961 14280;14281;14282;14283;14284;14285 14280 6 AQHQLGEFK MRCGDLLAASQVVNRAQHQLGEFKTWFQEY SQVVNRAQHQLGEFKTWFQEYMNSKDRRLS R A Q F K T 1 0 0 0 0 2 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1056.5352 Q8N1F7;H3BVG0;H3BPA9 Q8N1F7 341 349 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0049104 59.245 By MS/MS By matching By MS/MS 1 1 1 0.96215 0.92995 8.0666 3 Median NaN NaN NaN 0 0 Median 0.96215 0.85294 NaN 1 0 Median 0.88822 0.92995 NaN 1 0 Median 1.1536 1.0021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3651900 1720100 1931800 0 0 0 1775000 849470 925500 467490 249650 217850 1409400 621030 788410 0 0 0 0 0 0 2714 3356 2836 13962;13963;13964 14286;14287 14286 2 AQHQQALSSLELLNVLFR KVTENLRVLGEAQTKAQHQQALSSLELLNV QQALSSLELLNVLFRTCKHEKLTLDLTVLL K A Q F R T 2 1 1 0 0 3 1 0 1 0 5 0 0 1 0 2 0 0 0 1 0 0 18 0 2066.1273 Q9BQG0;I3L1L3 Q9BQG0 1077 1094 MYBBP1A Myb-binding protein 1A yes no 2;3 4.227E-14 114.82 By matching By matching By MS/MS By matching By MS/MS By matching 2 1 3 1 4 1 1.1191 1.0299 18.254 12 Median 1.459 1.4422 27.358 2 0 Median 1.1373 1.0081 NaN 1 0 Median 1.1013 1.2112 16.887 3 0 Plateau 1.1824 1.0086 NaN 1 0 Median 0.9698 1.0042 12.696 4 0 Median 1.2238 1.0383 NaN 1 0 Median 14952000 7250700 7701400 658440 218730 439710 182050 88482 93564 10835000 5383000 5451900 1052500 433700 618750 2127900 1078400 1049600 96333 48408 47924 2715 3789 2837 13965;13966;13967;13968;13969;13970;13971;13972;13973;13974;13975;13976 14288;14289;14290;14291;14292;14293 14291 6 AQHVFQHAVPQEGKPITNQK HDLLDICLKRATVQRAQHVFQHAVPQEGKP QHAVPQEGKPITNQKSSGRCWIFSCLNVMR R A Q Q K S 2 0 1 0 0 4 1 1 2 1 0 2 0 1 2 0 1 0 0 2 0 0 20 1 2256.1763 K7ES02;Q13867;J3KS79;K7ENH5 K7ES02 49 68 BLMH Bleomycin hydrolase yes no 3;4;5 9.1633E-09 69.333 By MS/MS By MS/MS By MS/MS By matching 4 8 2 1 0.80414 0.76569 39.311 15 Median 0.77316 0.73993 10.287 4 0 Median 0.79283 0.75935 49.621 8 2 Median 0.96106 1.0136 25.091 2 0 Median 0.53216 0.50545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68706000 38771000 29936000 36452000 19060000 17391000 26872000 16625000 10247000 4484400 2598400 1886000 898580 486740 411840 0 0 0 0 0 0 2716 1400 2838 13977;13978;13979;13980;13981;13982;13983;13984;13985;13986;13987;13988;13989;13990;13991 14294;14295;14296;14297;14298;14299;14300;14301;14302;14303;14304;14305;14306;14307 14300 14 AQIAGYLYGVSPPDNPQVK PKNVLKKFICISDLRAQIAGYLYGVSPPDN GYLYGVSPPDNPQVKEIRCIVMVPQWGTHQ R A Q V K E 2 0 1 1 0 2 0 2 0 1 1 1 0 0 3 1 0 0 2 2 0 0 19 0 2016.0316 Q6P2Q9 Q6P2Q9 2122 2140 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 1.3231E-18 122.46 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 4 1 0.70326 0.67478 16.66 11 Median 0.70326 0.67942 NaN 1 0 Median 0.49506 0.49691 NaN 1 0 Median 0.49864 0.55197 17.076 2 0 Median 0.83458 0.76556 3.9094 2 0 Median 0.67607 0.67843 14.015 4 0 Median 0.78029 0.67478 NaN 1 0 Median 58116000 35838000 22278000 8099600 4817000 3282700 852450 522750 329700 29807000 18663000 11144000 1679800 930870 748960 17408000 10762000 6646800 269280 143050 126230 2717 3157 2839 13992;13993;13994;13995;13996;13997;13998;13999;14000;14001;14002 14308;14309;14310;14311;14312;14313;14314;14315;14316;14317 14311 10 AQIAIDIK NDPNLETVYTLCEKKAQIAIDIKSAKRELK YTLCEKKAQIAIDIKSAKRELKKARTVLQM K A Q I K S 2 0 0 1 0 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 870.51747 P42285 P42285 826 833 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.012861 54.157 By matching By MS/MS 1 1 1.1774 1.134 11.546 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.136 1.2305 NaN 1 0 Median 1.2203 1.0451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6308100 2962700 3345300 0 0 0 0 0 0 3370800 1677400 1693500 2937200 1285300 1651900 0 0 0 0 0 0 2718 2309 2840 14003;14004 14318 14318 1 AQIDPVLLK VRNRNELAETLALLKAQIDPVLLKNSSQQD TLALLKAQIDPVLLKNSSQQDNSSRESPSL K A Q L K N 1 0 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 0 995.60153 Q96T23;H0YER1;H0YCN2;H7C306 Q96T23 207 215 RSF1 Remodeling and spacing factor 1 yes no 2 0.015183 43.808 By MS/MS By MS/MS 3 2 0.91243 0.94195 9.6059 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81025 0.9553 10.818 3 0 Plateau 1.1091 0.94337 0.21301 2 0 Median 22937000 11796000 11141000 0 0 0 0 0 0 0 0 0 0 0 0 20206000 10494000 9711900 2731600 1302300 1429300 2719 3740 2841 14005;14006;14007;14008;14009 14319;14320;14321 14320 3 AQIEDTLR GGKAPRVATSSKVTRAQIEDTLRRDHQLRE TSSKVTRAQIEDTLRRDHQLREAPDTAEKA R A Q L R R 1 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 944.49271 Q96CT7;M0R2F5 Q96CT7 98 105 CCDC124 Coiled-coil domain-containing protein 124 yes no 2 0.0023833 116.54 By MS/MS By MS/MS 2 1 1.1565 1.0605 21.563 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2754 1.2427 22.414 2 1 Median 1.1565 0.96468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16720000 7874500 8845300 0 0 0 0 0 0 11297000 5423200 5873400 5423200 2451300 2971900 0 0 0 0 0 0 2720 3621 2842 14010;14011;14012 14322;14323;14324;14325 14325 4 AQIEDTLRR GGKAPRVATSSKVTRAQIEDTLRRDHQLRE SSKVTRAQIEDTLRRDHQLREAPDTAEKAK R A Q R R D 1 2 0 1 0 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 1 1100.5938 Q96CT7;M0R2F5 Q96CT7 98 106 CCDC124 Coiled-coil domain-containing protein 124 yes no 2 0.0087024 55.531 By matching By matching By MS/MS 1 1 1 1.206 1.1355 3.5013 3 Plateau 1.1152 1.2006 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0879 1.1355 NaN 1 0 Median 1.206 1.1255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13627000 6148900 7477700 2651100 1192500 1458600 0 0 0 2307700 1051500 1256200 8667800 3904800 4763000 0 0 0 0 0 0 2721 3621 2843 14013;14014;14015 14326 14326 1 AQIFANTVDNAR VRDWSHYFKIIEDLRAQIFANTVDNARIVL DLRAQIFANTVDNARIVLQIDNARLAADDF R A Q A R I 3 1 2 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1318.663 P05783;F8VZY9 P05783 138 149 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 8.0453E-65 223.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 10 8 17 1.233 1.0882 18.812 47 Median 1.12 1.0385 22.871 4 0 Median 1.3703 1.1487 12.043 3 0 Median 1.2219 1.1676 13.857 6 2 Median 1.2888 1.0452 19.093 10 3 Median 1.3308 1.3387 12.407 8 2 Median 1.1623 0.96241 16.765 16 3 Median 4258600000 1861400000 2397100000 386170000 171780000 214390000 186860000 72907000 113960000 1342700000 595170000 747500000 1144800000 512750000 632050000 712750000 291780000 420960000 485320000 217030000 268280000 2722 1869 2844 14016;14017;14018;14019;14020;14021;14022;14023;14024;14025;14026;14027;14028;14029;14030;14031;14032;14033;14034;14035;14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046;14047;14048;14049;14050;14051;14052;14053;14054;14055;14056;14057;14058;14059;14060;14061;14062;14063 14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339;14340;14341;14342;14343;14344;14345;14346;14347;14348;14349;14350;14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392;14393;14394;14395;14396;14397;14398;14399;14400;14401;14402;14403;14404 14346 78 AQIHALEGGEVK EEAAFTCEYKYDGQRAQIHALEGGEVKIFS GQRAQIHALEGGEVKIFSRNQEDNTGKYPD R A Q V K I 2 0 0 0 0 1 2 2 1 1 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1250.6619 F5GZ28;P18858;M0R0Q7 F5GZ28 506 517 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.0013843 82.417 By MS/MS 1 0.79992 0.6886 NaN 1 Median NaN NaN NaN 0 0 Median 0.79992 0.6886 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926400 2147100 1779300 0 0 0 3926400 2147100 1779300 0 0 0 0 0 0 0 0 0 0 0 0 2723 1014 2845 14064 14405 14405 1 AQIHDLVLVGGSTR LEPVEKALRDAKLDKAQIHDLVLVGGSTRI KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K A Q T R I 1 1 0 1 0 1 0 2 1 1 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1464.8049 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 330 343 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 2.1662E-26 162.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 8 4 7 5 4 1.2908 1.1435 21.031 37 Median 1.3228 1.2476 26.102 9 6 Median 1.2528 1.0936 15.23 8 1 Median 1.2018 1.1951 37.584 4 2 Median 1.2675 1.0916 19.477 7 1 Median 1.2908 1.2841 4.3735 5 2 Median 1.2889 1.0736 1.736 4 2 Median 3068600000 1292100000 1776500000 1571700000 659160000 912520000 687350000 290450000 396900000 432700000 183140000 249560000 226480000 95590000 130890000 113410000 47752000 65660000 36970000 16001000 20969000 2724 278 2846 14065;14066;14067;14068;14069;14070;14071;14072;14073;14074;14075;14076;14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092;14093;14094;14095;14096;14097;14098;14099;14100;14101 14406;14407;14408;14409;14410;14411;14412;14413;14414;14415;14416;14417;14418;14419;14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432;14433;14434;14435;14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446;14447;14448;14449;14450;14451;14452;14453;14454;14455;14456;14457;14458;14459;14460;14461;14462;14463;14464;14465;14466;14467;14468;14469;14470 14416 64 AQILEMR TQKGLYRIGFIEEVKAQILEMRYTKGKLSM IGFIEEVKAQILEMRYTKGKLSMFVLLPSH K A Q M R Y 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 Q96P63 Q96P63 240 246 SERPINB12 Serpin B12 yes yes 2 0.034996 60.788 By MS/MS 2 6.8216 5.1388 47.389 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.8216 5.1388 47.389 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17959000 1454000 16505000 0 0 0 0 0 0 0 0 0 17959000 1454000 16505000 0 0 0 0 0 0 2725 3710 2847 14102;14103 14471;14472 14471 2 AQILGGANTPYEK GITCWQDKDQMDDLRAQILGGANTPYEKGV LRAQILGGANTPYEKGVFKLEVIIPERYPF R A Q E K G 2 0 1 0 0 1 1 2 0 1 1 1 0 0 1 0 1 0 1 0 0 0 13 0 1360.6987 Q9NPD8 Q9NPD8 36 48 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 2 7.6331E-07 103.08 By MS/MS By MS/MS By matching 1 2 1 0.82361 0.74579 21.151 4 Median 0.59231 0.55296 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89872 0.85028 9.319 2 2 Median 0.80364 0.6987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25816000 16930000 8885700 12897000 9399900 3496800 0 0 0 9481300 5552800 3928500 3438000 1977700 1460300 0 0 0 0 0 0 2726 4047 2848 14104;14105;14106;14107 14473;14474;14475 14473 3 AQILPIR ______________________________ ______________________________ M A Q I R F 1 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 7 0 809.51232 A0A087WVQ6;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 2 8 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0038265 102.98 By MS/MS By matching By MS/MS By matching By MS/MS 3 2 2 1 1 1.1375 1.0176 7.7687 9 Median 1.1375 1.0999 7.6133 3 0 Median 1.2283 1.0149 0.38004 2 0 Median 0.86145 0.96154 0.33652 2 0 Median 1.3056 1.1425 NaN 1 0 Median 0.93656 0.97915 NaN 1 0 Median NaN NaN NaN 0 0 Median 35611000 17286000 18325000 24147000 11695000 12452000 5153600 2330400 2823200 4348500 2233800 2114700 417650 183730 233920 1544100 842870 701260 0 0 0 2727 44 2849 14108;14109;14110;14111;14112;14113;14114;14115;14116 14476;14477;14478;14479;14480 14477 5 AQILVADTWSVLEGK DVTLFEGKRVSFYKRAQILVADTWSVLEGK AQILVADTWSVLEGKGDGCFKDISSITMFA R A Q G K G 2 0 0 1 0 1 1 1 0 1 2 1 0 0 0 1 1 1 0 2 0 0 15 0 1628.8774 Q5T6V5;Q5T6V7 Q5T6V5 209 223 C9orf64 UPF0553 protein C9orf64 yes no 2 0.0012693 41.283 By MS/MS By matching 1 1 1.2781 1.2087 19.428 2 Median NaN NaN NaN 0 0 Median 1.6378 1.3867 NaN 1 0 Median 0.99734 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1944100 710180 1234000 0 0 0 1341000 431150 909830 603160 279030 324140 0 0 0 0 0 0 0 0 0 2728 3092 2850 14117;14118 14481 14481 1 AQIMAYK RGPTPFNQNQLHQLRAQIMAYKMLARGQPL QNQLHQLRAQIMAYKMLARGQPLPDHLQMA R A Q Y K M 2 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 7 0 823.42621 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGP5 P51532 182 188 SMARCA4 Transcription activator BRG1 yes no 2 0.025249 54.525 By MS/MS 1 0.99814 1.1122 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99814 1.1122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4125000 1943700 2181400 0 0 0 0 0 0 4125000 1943700 2181400 0 0 0 0 0 0 0 0 0 2729 366 2851 14119 14482 14482 1 AQIMNVSWSADHR IKAIPRFNQKGEVYKAQIMNVSWSADHRVI YKAQIMNVSWSADHRVIDGATMSRFSNLWK K A Q H R V 2 1 1 1 0 1 0 0 1 1 0 0 1 0 0 2 0 1 0 1 0 0 13 0 1513.7096 P11182 P11182 441 453 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 3 1.2454E-05 125.82 By matching By MS/MS By MS/MS 1 1 1 1.1421 1.1394 11.577 3 Median 1.1421 1.1394 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0418 1.0454 NaN 1 0 Median 1.5211 1.3147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14645000 6682200 7963200 3047600 1511600 1536000 0 0 0 4987400 2644700 2342700 6610500 2525900 4084500 0 0 0 0 0 0 2730 1955 2852 14120;14121;14122 14483;14484;14485;14486 14485 4 AQIQQFHSQIAAQTSASVLAEELHK QMQVQDILEQNEALKAQIQQFHSQIAAQTS AAQTSASVLAEELHKVIAEKDKQIKQTEDS K A Q H K V 5 0 0 0 0 5 2 0 2 2 2 1 0 1 0 3 1 0 0 1 0 0 25 0 2734.4038 Q86UP2 Q86UP2 583 607 KTN1 Kinectin yes yes 3;4 3.5115E-09 49.638 By MS/MS By MS/MS 2 2 1.4345 1.3833 11.429 4 Median 1.4345 1.3833 7.0859 2 0 Median NaN NaN NaN 0 0 Median 1.3618 1.4647 17.577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39131000 15759000 23372000 26872000 10318000 16554000 0 0 0 12258000 5440600 6817800 0 0 0 0 0 0 0 0 0 2731 3280 2853 14123;14124;14125;14126 14487;14488;14489;14490 14490 4 AQIWDTAGQER EFATRSIQVDGKTIKAQIWDTAGQERYRAI KTIKAQIWDTAGQERYRAITSAYYRGAVGA K A Q E R Y 2 1 0 1 0 2 1 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 11 0 1273.6051 H3BSC1;P62491;H3BMH2;Q15907 Q15907 62 72 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 8.7445E-05 150.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.1855 1.1304 31.042 6 Median 0.91554 0.89338 26.682 2 0 Median 1.3651 1.1329 NaN 1 1 Median 1.1739 1.1278 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1971 1.1918 NaN 1 0 Median 2.0304 1.9546 NaN 1 0 Median 200910000 89075000 111830000 172940000 77299000 95642000 2616500 1064900 1551700 13568000 6361400 7206400 0 0 0 4925800 1981000 2944800 6856300 2368400 4487900 2732 1233;2976 2854 14127;14128;14129;14130;14131;14132 14491;14492;14493;14494;14495;14496;14497;14498 14491 8 AQKDEEKMEIQEIQLK AADESERGMKVIESRAQKDEEKMEIQEIQL QKDEEKMEIQEIQLKEAKHIAEDADRKYEE R A Q L K E 1 0 0 1 0 3 4 0 0 2 1 3 1 0 0 0 0 0 0 0 0 0 16 2 1958.9983 H0YKX5;H0YL42;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2 H0YKX5 58 73 TPM1 no no 3;4 4.3056E-05 51.591 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.97233 0.9845 48.397 6 Median 1.0027 1.0474 2.2484 2 0 Median 0.84446 0.83877 21.186 2 0 Median 0.96381 0.99477 NaN 1 0 Median 0.314 0.30488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39177000 19366000 19811000 31173000 15038000 16135000 2507000 1306000 1201000 4665400 2444900 2220400 831640 577510 254130 0 0 0 0 0 0 2733 1193;1249 2855 14133;14134;14135;14136;14137;14138 14499;14500;14501;14502;14503 14499 5 AQKVEVKEELLAVGK LEDTATSSKRRPRTRAQKVEVKEELLAVGK AQKVEVKEELLAVGKLTQTSGETTHTDKEP R A Q G K L 2 0 0 0 0 1 3 1 0 0 2 3 0 0 0 0 0 0 0 3 0 0 15 2 1639.9509 P46013 P46013 2846 2860 MKI67 Antigen KI-67 yes yes 3;4 0.00073393 38.028 By MS/MS By matching 4 1 1.0242 1.2568 13.222 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.074 1.3335 12.053 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0242 1.1128 NaN 1 0 Median 29919000 13488000 16431000 0 0 0 0 0 0 29248000 13178000 16070000 0 0 0 0 0 0 671210 310030 361180 2734 2335 2856 14139;14140;14141;14142;14143 14504;14505 14504 1 AQLADSFHLQQFFR LSRRNALHERAMRRRAQLADSFHLQQFFRD RAQLADSFHLQQFFRDSDELKSWVNEKMKT R A Q F R D 2 1 0 1 0 3 0 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 14 0 1706.8529 A0A0D9SF54;Q13813 Q13813 567 580 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 6.4373E-07 120.09 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 4 4 2 0.99018 0.9393 20.859 12 Median 1.123 1.0866 NaN 1 1 Median 0.77296 0.61858 NaN 1 0 Median 0.93197 0.98802 20.724 4 0 Median 1.1141 0.98388 13.08 4 0 Median 0.73308 0.76839 7.0771 2 0 Median NaN NaN NaN 0 0 Median 64031000 31416000 32615000 3939200 1722000 2217200 20784000 9824200 10959000 36198000 18202000 17995000 1378900 649390 729480 1731200 1017800 713430 0 0 0 2735 264;2838 2857 14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155 14506;14507;14508;14509;14510;14511;14512 14510 7 AQLAETVSR YKRHYKLQTRPGFNKAQLAETVSRHFRNIP RPGFNKAQLAETVSRHFRNIPVNEKETLAY K A Q S R H 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 973.51926 Q9HAJ7 Q9HAJ7 137 145 SAP30L Histone deacetylase complex subunit SAP30L yes yes 2 0.0015606 80.165 By MS/MS 1 0.45479 0.43328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45479 0.43328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3404000 2168400 1235500 0 0 0 0 0 0 3404000 2168400 1235500 0 0 0 0 0 0 0 0 0 2736 4009 2858 14156 14513 14513 1 AQLDEWK IGEKKLLVKVDAKTKAQLDEWKAKKKASNG VKVDAKTKAQLDEWKAKKKASNGNARPETV K A Q W K A 1 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 7 0 888.43413 P49756;E9PQU5 P49756 167 173 RBM25 RNA-binding protein 25 yes no 2 0.026054 53.554 By matching By MS/MS By matching 1 2 1 1.1084 1.0552 20.518 4 Median NaN NaN NaN 0 0 Median 1.5073 1.2774 NaN 1 0 Median 0.82026 0.8854 1.0957 2 0 Median 1.4839 1.2478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7455300 3532900 3922400 0 0 0 891750 355060 536700 5093600 2617000 2476600 1470000 560920 909040 0 0 0 0 0 0 2737 2397 2859 14157;14158;14159;14160 14514;14515 14515 2 AQLDPAFIK PLSSGKSQPAPAEFRAQLDPAFIKTYEDIK APAEFRAQLDPAFIKTYEDIKENLESRRFQ R A Q I K T 2 0 0 1 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 9 0 1001.5546 P25325;B1AH49 P25325 156 164 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2 0.012856 45.972 By MS/MS By matching By matching 1 1 1 0.74429 0.75176 8.8137 3 Plateau 0.82894 0.75176 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73815 0.71738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74429 0.63387 NaN 1 0 Median 39288000 20648000 18640000 37255000 19546000 17709000 0 0 0 1336900 812640 524240 0 0 0 0 0 0 696040 289210 406830 2738 2131 2860 14161;14162;14163 14516;14517 14517 2 AQLDSFVK METLKTIKKENIQQKAQLDSFVKSMSSLQN KENIQQKAQLDSFVKSMSSLQNDRDRIVGD K A Q V K S 1 0 0 1 0 1 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 0 906.48108 Q14789 Q14789 2457 2464 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.047416 35.295 By MS/MS By matching 1 1 1.0324 0.91205 0.038148 2 Median NaN NaN NaN 0 0 Median 1.0462 0.91229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0188 0.9118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8590700 4147800 4443000 0 0 0 4349900 2062300 2287700 0 0 0 4240800 2085500 2155300 0 0 0 0 0 0 2739 2900 2861 14164;14165 14518 14518 1 AQLEAHLGQVMESVR APDANQQLQQAMEERAQLEAHLGQVMESVR AQLEAHLGQVMESVRQLQMERDKYAENLKG R A Q V R Q 2 1 0 0 0 2 2 1 1 0 2 0 1 0 0 1 0 0 0 2 0 0 15 0 1666.8461 A0A2Q2TH77;Q08379;B7ZC06 A0A2Q2TH77 361 375 GOLGA2 Golgin subfamily A member 2 yes no 3 0.017745 21.534 By MS/MS 1 0.81493 0.79428 NaN 1 Median 0.81493 0.79428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3032100 1695900 1336200 3032100 1695900 1336200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2740 355 2862 14166 14519;14520 14519 2 AQLEMQSQQLR RGELRGRLARLELERAQLEMQSQQLRESNQ ELERAQLEMQSQQLRESNQQLDLSACRLTT R A Q L R E 1 1 0 0 0 4 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1330.6663 A6NC98;H7BY33 A6NC98 1201 1211 CCDC88B Coiled-coil domain-containing protein 88B yes no 2 0.014071 40.352 By MS/MS 1 1.1849 1.1708 NaN 1 Median 1.1849 1.1708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4319200 2155000 2164200 4319200 2155000 2164200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2741 504 2863 14167 14521 14521 204 1 AQLEPVASPAK INAIKDYELQLVTYKAQLEPVASPAKKPKV VTYKAQLEPVASPAKKPKVQSGSESVIQEY K A Q A K K 3 0 0 0 0 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 11 0 1109.6081 Q15149;H0YDN1 Q15149 1428 1438 PLEC Plectin yes no 2 0.00018859 98.055 By MS/MS By MS/MS 1 1 0.74484 0.68671 11.059 2 Median 0.63986 0.63506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86704 0.74257 NaN 1 0 Median 12514000 6753700 5760700 3009800 1960000 1049800 0 0 0 0 0 0 0 0 0 0 0 0 9504500 4793700 4710800 2742 2933 2864 14168;14169 14522;14523;14524;14525;14526 14526 5 AQLFALTGVQPAR EGVELNTDEPPMVFKAQLFALTGVQPARQK FKAQLFALTGVQPARQKVMVKGGTLKMELP K A Q A R Q 3 1 0 0 0 2 0 1 0 0 2 0 0 1 1 0 1 0 0 1 0 0 13 0 1370.767 A6NJA2;P54578;J3QQT6;J3KS55 A6NJA2 31 43 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 4.8234E-07 121.83 By MS/MS By MS/MS By MS/MS 4 4 1 0.93479 0.90516 18.545 8 Median 0.93479 0.91332 5.4667 4 2 Median 1.0667 0.91902 29.627 3 0 Plateau 0.90156 0.91079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39107000 19726000 19381000 26059000 12895000 13164000 4261000 2084500 2176600 8787000 4746400 4040600 0 0 0 0 0 0 0 0 0 2743 523 2865 14170;14171;14172;14173;14174;14175;14176;14177;14178 14527;14528;14529;14530;14531;14532 14528 6 AQLGEDIRR ______________________________ GKLIIKAQLGEDIRRIPIHNEDITYDELVL K A Q R R I 1 2 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 1 1056.5676 Q92734;C9JTY3;C9JUE0;C9JJP5 Q92734 15 23 TFG Protein TFG yes no 2 0.0072636 67.032 By MS/MS 1 0.67382 0.60766 NaN 1 Median NaN NaN NaN 0 0 Median 0.67382 0.60766 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1344400 774620 569760 0 0 0 1344400 774620 569760 0 0 0 0 0 0 0 0 0 0 0 0 2744 3551 2866 14179 14533 14533 1 AQLGGPEAAK TQSNEITIPVTFESRAQLGGPEAAKSDETA TFESRAQLGGPEAAKSDETAAK________ R A Q A K S 3 0 0 0 0 1 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 10 0 940.49779 P04792;C9J3N8 P04792 189 198 HSPB1 Heat shock protein beta-1 yes no 2 0.0085275 46.39 By MS/MS By matching By matching By matching 1 1 1 1 1.0066 0.90054 25.863 4 Median 0.88668 0.83024 NaN 1 0 Median 1.1428 0.97679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65844 0.67644 NaN 1 0 Median 1.4842 1.247 NaN 1 0 Median 5371700 2826400 2545300 3578400 1935500 1642900 744890 310980 433910 0 0 0 0 0 0 781400 446730 334660 267070 133200 133870 2745 1851 2867 14180;14181;14182;14183 14534;14535 14535 2 AQLGGPEAAKSDETAAK TQSNEITIPVTFESRAQLGGPEAAKSDETA LGGPEAAKSDETAAK_______________ R A Q A K - 5 0 0 1 0 1 2 2 0 0 1 2 0 0 1 1 1 0 0 0 0 0 17 1 1642.8162 P04792;C9J3N8 P04792 189 205 HSPB1 Heat shock protein beta-1 yes no 3 0.026623 16.685 By MS/MS By MS/MS By matching 1 1 1 0.8274 0.8422 33.252 3 Median 0.8274 0.8422 NaN 1 0 Median 1.1492 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52513 0.54784 NaN 1 0 Median NaN NaN NaN 0 0 Median 2894600 1515900 1378800 1317900 699630 618280 952610 394980 557630 0 0 0 0 0 0 624090 421230 202860 0 0 0 2746 1851 2868 14184;14185;14186 14536;14537 14537 2 AQLGLGHSYSR FHNLVKGLTDLSACKAQLGLGHSYSRAKVK SACKAQLGLGHSYSRAKVKFNVNRVDNMII K A Q S R A 1 1 0 0 0 1 0 2 1 0 2 0 0 0 0 2 0 0 1 0 0 0 11 0 1187.6047 O00567;A0A494C128;Q5JXT2 O00567 144 154 NOP56 Nucleolar protein 56 yes no 2;3 0.0001969 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 3 1.499 1.395 40.574 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8435 1.8586 NaN 1 1 Median 1.2189 1.0471 NaN 1 1 Median 30887000 4148700 26738000 908270 0 908270 4004700 0 4004700 8337400 0 8337400 0 0 0 9410800 1053900 8356900 8225700 3094800 5130900 2747 1472 2869 14187;14188;14189;14190;14191;14192;14193;14194;14195;14196 14538;14539;14540;14541;14542;14543;14544;14545;14546;14547 14543 10 AQLGVQAFADALLIIPK MAEALIKHKPSVKGRAQLGVQAFADALLII LGVQAFADALLIIPKVLAQNSGFDLQETLV R A Q P K V 4 0 0 1 0 2 0 1 0 2 3 1 0 1 1 0 0 0 0 1 0 0 17 0 1767.0295 P40227 P40227 433 449 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.067571 18.81 By MS/MS By matching 1 1 0.96986 0.90822 5.6368 2 Median 0.90709 0.87273 NaN 1 0 Median 1.037 0.94515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3262400 1653600 1608800 3090500 1574800 1515600 171910 78764 93146 0 0 0 0 0 0 0 0 0 0 0 0 2748 2285 2870 14197;14198 14548 14548 1 AQLHDTNMELTDLK KKLYEQILAENEKLKAQLHDTNMELTDLKL KAQLHDTNMELTDLKLQLEKATQRQERFAD K A Q L K L 1 0 1 2 0 1 1 0 1 0 3 1 1 0 0 0 2 0 0 0 0 0 14 0 1627.7876 O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974 948 961 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 0.00011218 70.98 By MS/MS 3 1.1202 0.97901 6.9182 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1202 0.97901 6.9182 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6288000 3095000 3193000 0 0 0 0 0 0 0 0 0 6288000 3095000 3193000 0 0 0 0 0 0 2749 1508 2871 14199;14200;14201 14549;14550 14549 2 AQLLEIAK SERGRSPKRLTDLDKAQLLEIAKANAAAMC RLTDLDKAQLLEIAKANAAAMCAKAGVPLP K A Q A K A 2 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 884.53312 P18583;H7C1M2;J3QSZ5;H7C2G8 P18583 2056 2063 SON Protein SON yes no 2 0.064758 47.082 By MS/MS 1 1.0448 1.1491 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0448 1.1491 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467400 733840 733570 0 0 0 0 0 0 1467400 733840 733570 0 0 0 0 0 0 0 0 0 2750 2058 2872 14202 14551 14551 1 AQLLQGLDEAK EQNLSSQVECLELEKAQLLQGLDEAKNNYI ELEKAQLLQGLDEAKNNYIVLQSSVNGLIQ K A Q A K N 2 0 0 1 0 2 1 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1184.6401 P49454 P49454 2483 2493 CENPF Centromere protein F yes yes 2 0.00020098 103.7 By matching By MS/MS By MS/MS 1 1 1 1.0512 0.99308 27.913 3 Median NaN NaN NaN 0 0 Median 0.98296 0.84093 NaN 1 0 Median 1.3525 1.4498 NaN 1 0 Median 1.0512 0.99308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12479000 5109600 7369200 0 0 0 3830900 2163200 1667700 7592500 2452500 5140000 1055500 494020 561480 0 0 0 0 0 0 2751 2383 2873 14203;14204;14205 14552;14553 14552 2 AQLLQPTLEINPR HFLRMQQLAKTQEERAQLLQPTLEINPRHA ERAQLLQPTLEINPRHALIKKLNQLRASEP R A Q P R H 1 1 1 0 0 2 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 13 0 1491.8409 I3L0K7;Q12931 Q12931 635 647 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 8.2378E-07 156.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 1 1 3 0.87473 0.86353 32.662 15 Median 0.824 0.77308 12.056 5 2 Median 1.0883 0.97569 22.01 5 0 Median 0.87473 0.88648 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1194 2.239 NaN 1 0 Median 1.1002 0.90437 30.296 3 0 Median 162210000 83806000 78402000 90419000 48828000 41591000 48932000 23697000 25235000 18330000 9805700 8524700 0 0 0 3458200 935100 2523100 1068000 540200 527810 2752 2771;1269 2874 14206;14207;14208;14209;14210;14211;14212;14213;14214;14215;14216;14217;14218;14219;14220 14554;14555;14556;14557;14558;14559;14560;14561;14562;14563;14564;14565;14566;14567 14566 14 AQLLVNPK HILDREGGAKLKKERAQLLVNPKKIIKKPE AKLKKERAQLLVNPKKIIKKPEYDLEEDDQ R A Q P K K 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 0 881.53345 Q13416;B8ZZ80;C9JK08 Q13416 40 47 ORC2 Origin recognition complex subunit 2 yes no 2 0.0040847 83.614 By MS/MS 1 0.78959 0.84 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78959 0.84 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3389300 2024300 1365000 0 0 0 0 0 0 3389300 2024300 1365000 0 0 0 0 0 0 0 0 0 2753 2813 2875 14221 14568 14568 1 AQLMADFQAGR LWEVMQSDLIPEEQRAQLMADFQAGRVTKE EEQRAQLMADFQAGRVTKERMIIIIIEIIE R A Q G R V 3 1 0 1 0 2 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 11 0 1206.5815 Q15149;H0YDN1 Q15149 3739 3749 PLEC Plectin yes no 2 0.00014929 116.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 2 1 1.2027 1.1114 14.206 10 Median 1.0721 1.026 16.909 2 0 Median 1.2964 1.0683 15.261 3 0 Median 0.98966 1.0431 NaN 1 1 Median 1.1016 0.95896 NaN 1 0 Median 1.2331 1.2955 11.418 2 0 Median 1.4721 1.1985 NaN 1 0 Median 95434000 42151000 53283000 50455000 22781000 27673000 20630000 7920100 12710000 12597000 5969400 6627600 1630100 913050 717020 8626500 3978100 4648400 1495100 588410 906690 2754 2933 2876 14222;14223;14224;14225;14226;14227;14228;14229;14230;14231 14569;14570;14571;14572;14573;14574;14575;14576;14577 14569 9 AQLNETLTK YSEAVRQNEELNLLKAQLNETLTKLRTEQN ELNLLKAQLNETLTKLRTEQNERQKVAGDL K A Q T K L 1 0 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 1016.5502 Q86UP2;G3V4Y7;B7Z6P3;H0YJP2 Q86UP2 1260 1268 KTN1 Kinectin yes no 2 0.0035377 64.42 By MS/MS By MS/MS 1 2 1.4373 1.2619 43.786 3 Median 1.8027 1.6982 NaN 1 0 Median 1.1041 0.95138 39.951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16045000 8145800 7898800 1865300 749960 1115300 14179000 7395800 6783500 0 0 0 0 0 0 0 0 0 0 0 0 2755 3280 2877 14232;14233;14234 14578;14579;14580;14581;14582 14581 5 AQLPVMVIVTPQDR VEEQVEIRSGFLAARAQLPVMVIVTPQDRK RAQLPVMVIVTPQDRKNSVWTQDGPSAQIL R A Q D R K 1 1 0 1 0 2 0 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1565.8599 Q9H6R4;A0A0A0MRW6 Q9H6R4 942 955 NOL6 Nucleolar protein 6 yes no 2 0.00052445 68.069 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.73765 0.76991 17.073 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73692 0.80246 NaN 1 0 Median 1.1001 0.98025 NaN 1 0 Median 0.695 0.73868 NaN 1 0 Median 0.73838 0.65295 NaN 1 0 Median 3989100 2331400 1657700 0 0 0 0 0 0 1720900 1010800 710130 87374 38206 49168 2065400 1224000 841370 115430 58359 57072 2756 3976 2878 14235;14236;14237;14238 14583;14584 14583 2 AQLPVVVFTFSR DRGVYLSLLASLRTRAQLPVVVFTFSRGRC RTRAQLPVVVFTFSRGRCDEQASGLTSLDL R A Q S R G 1 1 0 0 0 1 0 0 0 0 1 0 0 2 1 1 1 0 0 3 0 0 12 0 1362.766 Q15477 Q15477 565 576 SKIV2L Helicase SKI2W yes yes 2 0.030808 28.013 By MS/MS 2 0.7809 0.77836 23.829 2 Median 0.7809 0.77836 23.829 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1604800 832650 772110 1604800 832650 772110 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2757 2955 2879 14239;14240 14585;14586 14585 2 AQLQQHNLEMVGEGTR RQQIEELKNENALLRAQLQQHNLEMVGEGT QLQQHNLEMVGEGTRQ______________ R A Q T R Q 1 1 1 0 0 3 2 2 1 0 2 0 1 0 0 0 1 0 0 1 0 0 16 0 1809.8792 M0QXT0;Q15853 M0QXT0 237 252 USF2 Upstream stimulatory factor 2 yes no 3 3.6063E-05 53.565 By MS/MS 1 0.79495 0.86803 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79495 0.86803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15769000 7925800 7842800 0 0 0 0 0 0 15769000 7925800 7842800 0 0 0 0 0 0 0 0 0 2758 1411 2880 14241 14587;14588 14587 2 AQLQQHNLEMVGEGTRQ RQQIEELKNENALLRAQLQQHNLEMVGEGT LQQHNLEMVGEGTRQ_______________ R A Q R Q - 1 1 1 0 0 4 2 2 1 0 2 0 1 0 0 0 1 0 0 1 0 0 17 1 1937.9378 M0QXT0;Q15853 M0QXT0 237 253 USF2 Upstream stimulatory factor 2 yes no 3 3.8742E-06 78.441 By MS/MS By MS/MS 2 1 0.84163 0.88227 12.866 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82356 0.86809 2.2916 2 0 Median 1.2645 1.0829 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33873000 17181000 16692000 0 0 0 0 0 0 29433000 15097000 14336000 4439800 2084000 2355700 0 0 0 0 0 0 2759 1411 2881 14242;14243;14244 14589;14590;14591 14590 3 AQLSDYSDIVTTLDLAPPTK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL YSDIVTTLDLAPPTKKLMMWKETGGVEKLF R A Q T K K 2 0 0 3 0 1 0 0 0 1 3 1 0 0 2 2 3 0 1 1 0 0 20 0 2147.0998 O60216 O60216 339 358 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 4.5223E-05 40.725 By matching By MS/MS 1 2 0.68279 0.66021 24.992 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83866 0.87685 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59506 0.59308 15.164 2 0 Median NaN NaN NaN 0 0 Median 2439400 1425600 1013800 0 0 0 0 0 0 518880 259580 259300 0 0 0 1920500 1166000 754460 0 0 0 2760 1603 2882 14245;14246;14247 14592 14592 1 AQLSDYSDIVTTLDLAPPTKK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL SDIVTTLDLAPPTKKLMMWKETGGVEKLFS R A Q K K L 2 0 0 3 0 1 0 0 0 1 3 2 0 0 2 2 3 0 1 1 0 0 21 1 2275.1947 O60216 O60216 339 359 RAD21 Double-strand-break repair protein rad21 homolog yes yes 3 8.778E-05 35.834 By MS/MS By MS/MS By matching 1 2 1 0.67384 0.7394 8.2774 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60308 0.68969 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67384 0.73655 10.39 2 0 Median 0.88977 0.79301 NaN 1 0 Median 11906000 6903600 5002400 0 0 0 0 0 0 3771000 2278400 1492600 0 0 0 7529400 4327100 3202200 605570 298030 307530 2761 1603 2883 14248;14249;14250;14251 14593;14594;14595;14596;14597 14593 5 AQLSQYFDAVK YKELRKLEVEYEQKRAQLSQYFDAVKNAQH EQKRAQLSQYFDAVKNAQHVEVESIPLPDM R A Q V K N 2 0 0 1 0 2 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1268.6401 Q9Y2W2;F5H5G4 Q9Y2W2 119 129 WBP11 WW domain-binding protein 11 yes no 2 0.00065076 65.347 By MS/MS By matching By MS/MS By matching 2 2 3 1 1.2247 1.1123 66.055 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3538 1.4543 32.614 2 0 Median 1.1027 0.9418 18.232 2 0 Median 1.2527 1.2805 108.83 3 0 Median 1.2151 1.014 NaN 1 0 Median 35528000 17152000 18376000 0 0 0 0 0 0 18853000 9331200 9522200 1864400 753040 1111400 14184000 6783500 7401000 625550 283930 341610 2762 4394 2884 14252;14253;14254;14255;14256;14257;14258;14259 14598;14599;14600;14601 14601 4 AQLSSSLQEGVMQK PSCEVNRECSVFLSKAQLSSSLQEGVMQKF KAQLSSSLQEGVMQKFNGHDALPFIPADKL K A Q Q K F 1 0 0 0 0 3 1 1 0 0 2 1 1 0 0 3 0 0 0 1 0 0 14 0 1504.7555 O96028;D6RIS1;D6R9V2 O96028 51 64 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 3.9825E-11 125.74 By MS/MS 1 1.0866 1.1032 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0866 1.1032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10864000 4670400 6194000 0 0 0 0 0 0 10864000 4670400 6194000 0 0 0 0 0 0 0 0 0 2763 1810 2885 14260 14602 14602 1 AQMAALAAMR APDEDREPESARMQRAQMAALAAMRAAAAG ARMQRAQMAALAAMRAAAAGLGHPASPGGS R A Q M R A 5 1 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 10 0 1032.5209 Q99856 Q99856 57 66 ARID3A AT-rich interactive domain-containing protein 3A yes yes 2 0.00076705 71.501 By MS/MS 1 0.71362 0.72644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71362 0.72644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11772000 5965200 5807300 0 0 0 0 0 0 11772000 5965200 5807300 0 0 0 0 0 0 0 0 0 2764 3772 2886 14261 14603;14604 14604 2 AQMSNFLASTTNQQEIASLDVK TACYDIDVEVDDPLKAQMSNFLASTTNQQE ASTTNQQEIASLDVKIHETIESINQLKTQR K A Q V K I 3 0 2 1 0 3 1 0 0 1 2 1 1 1 0 3 2 0 0 1 0 0 22 0 2395.1689 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 343 364 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2;3 5.4697E-07 43.497 By MS/MS By matching 2 1 0.94338 0.93259 13.923 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89697 0.90145 4.8029 2 0 Median 1.2933 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10851000 5898800 4952700 0 0 0 0 0 0 10607000 5793100 4813800 244500 105610 138880 0 0 0 0 0 0 2765 655 2887 14262;14263;14264 14605;14606;14607;14608 14606 4 AQMVQEDLEK ARQKKESEAVEWQQKAQMVQEDLEKTRAEL EWQQKAQMVQEDLEKTRAELKTAMSTPHVA K A Q E K T 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1189.5649 P26038 P26038 449 458 MSN Moesin yes yes 2 0.00011626 122.13 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1.1424 1.0646 15.619 9 Median 0.88748 0.80992 17.9 2 1 Median 1.2442 1.0993 4.5355 2 0 Median 1.1507 1.1466 4.3703 2 0 Median 1.2117 1.05 8.0979 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 204170000 89347000 114820000 39794000 20071000 19723000 38359000 11009000 27350000 104070000 47855000 56220000 21939000 10413000 11526000 0 0 0 0 0 0 2766 2139 2888;2889 14265;14266;14267;14268;14269;14270;14271;14272;14273;14274 14609;14610;14611;14612;14613;14614;14615;14616;14617;14618;14619;14620 14611 898 12 AQMVQEDLEKTR ARQKKESEAVEWQQKAQMVQEDLEKTRAEL QQKAQMVQEDLEKTRAELKTAMSTPHVAEP K A Q T R A 1 1 0 1 0 2 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 12 1 1446.7137 P26038 P26038 449 460 MSN Moesin yes yes 2;3 0.0015881 76.465 By MS/MS 2 1.2331 1.2543 4.7059 2 Median 1.2331 1.2543 4.7059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4960500 2624500 2335900 4960500 2624500 2335900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2767 2139 2890 14275;14276 14621;14622;14623 14623 3 AQNDLIWNIK KKEKDKDSKLEKALKAQNDLIWNIKDELKK EKALKAQNDLIWNIKDELKKVCSTNDLKEL K A Q I K D 1 0 2 1 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1213.6455 P09874 P09874 240 249 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0041692 54.157 By MS/MS By MS/MS By matching 2 2 1 0.96363 1.0434 18.506 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92545 1.0119 4.3374 2 0 Median 1.3162 1.1436 5.9184 2 0 Median NaN NaN NaN 0 0 Median 0.87594 0.73429 NaN 1 0 Median 13535000 6265300 7269800 0 0 0 0 0 0 7736900 3886900 3850000 5483800 2249100 3234700 0 0 0 314310 129300 185010 2768 1922 2891 14277;14278;14279;14280;14281 14624;14625;14626;14627 14626 4 AQNDLIWNIKDELK KKEKDKDSKLEKALKAQNDLIWNIKDELKK KAQNDLIWNIKDELKKVCSTNDLKELLIFN K A Q L K K 1 0 2 2 0 1 1 0 0 2 2 2 0 0 0 0 0 1 0 0 0 0 14 1 1698.8941 P09874 P09874 240 253 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.316E-06 98.156 By matching By MS/MS By matching By matching By matching 1 8 7 2 3 1.1811 1.1952 18.303 21 Median NaN NaN NaN 0 0 Median 1.3397 1.2226 NaN 1 0 Median 1.0329 1.1778 15.856 8 0 Median 1.2691 1.1952 22.904 7 0 Median 1.1516 1.2452 11.809 2 0 Median 1.0844 0.94115 22.831 3 0 Median 149110000 69485000 79624000 0 0 0 231630 94941 136690 83207000 39823000 43383000 56450000 25516000 30935000 4844700 2171000 2673700 4375900 1879900 2496000 2769 1922 2892 14282;14283;14284;14285;14286;14287;14288;14289;14290;14291;14292;14293;14294;14295;14296;14297;14298;14299;14300;14301;14302 14628;14629;14630;14631;14632;14633;14634;14635;14636 14630 9 AQNDLIWNIKDELKK KKEKDKDSKLEKALKAQNDLIWNIKDELKK AQNDLIWNIKDELKKVCSTNDLKELLIFNK K A Q K K V 1 0 2 2 0 1 1 0 0 2 2 3 0 0 0 0 0 1 0 0 0 0 15 2 1826.989 P09874 P09874 240 254 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 3.2111E-07 146.36 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 10 11 5 3 1.1221 1.2234 24.562 31 Median 0.90287 0.94643 NaN 1 0 Median 0.95077 0.90298 NaN 1 0 Median 1.0446 1.2249 19.271 10 0 Median 1.3665 1.3808 21.116 11 0 Median 1.0566 1.1779 23.651 5 0 Median 1.1781 1.0111 32.533 3 0 Median 305280000 138870000 166410000 4243300 2096000 2147300 334410 142210 192200 241590000 109980000 131610000 38891000 17009000 21881000 18218000 8753200 9465000 1998500 886020 1112500 2770 1922 2893 14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313;14314;14315;14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333 14637;14638;14639;14640;14641;14642;14643;14644;14645;14646;14647;14648;14649;14650;14651;14652;14653;14654 14644 18 AQNIMESFENPFR AEDSKKGPLTVAQKKAQNIMESFENPFRMF KKAQNIMESFENPFRMFLPSLGHRAPVSQA K A Q F R M 1 1 2 0 0 1 2 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 13 0 1581.7246 Q01780 Q01780 681 693 EXOSC10 Exosome component 10 yes yes 2 5.9879E-07 105.86 By MS/MS 1 0.96692 1.0358 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96692 1.0358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3903500 1908200 1995300 0 0 0 0 0 0 3903500 1908200 1995300 0 0 0 0 0 0 0 0 0 2771 2691 2894 14334 14655;14656 14656 2 AQNISSNANMLR PSAAPIKQVEEKPQRAQNISSNANMLRKGP PQRAQNISSNANMLRKGPAEDMSSKLNQAR R A Q L R K 2 1 3 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 12 0 1317.6459 Q14008 Q14008 1442 1453 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 6.1786E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 1.2077 1.0763 29.036 8 Median 1.1751 1.129 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3991 1.5534 10.599 3 0 Median 1.1228 0.99131 3.2396 2 0 Median NaN NaN NaN 0 0 Median 1.0294 0.84447 27.547 2 1 Median 51882000 21769000 30113000 4480000 1989500 2490500 0 0 0 25518000 10627000 14891000 10393000 4823200 5569300 0 0 0 11492000 4329600 7162300 2772 2850 2895;2896 14335;14336;14337;14338;14339;14340;14341;14342 14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667 14658 1530 11 AQNKPFYVVAESFK IINKIGTNQMAVCAKAQNKPFYVVAESFKF KAQNKPFYVVAESFKFVRLFPLNQQDVPDK K A Q F K F 2 0 1 0 0 1 1 0 0 0 0 2 0 2 1 1 0 0 1 2 0 0 14 1 1626.8406 Q14232 Q14232 221 234 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 3 0.00030694 54.09 By MS/MS By matching By matching 1 1 1 1.1754 1.0591 4.5676 3 Median 1.0219 0.99328 NaN 1 0 Median 1.1754 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2358 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13192000 6547000 6644600 12178000 6110200 6067900 699840 309530 390310 0 0 0 313680 127300 186380 0 0 0 0 0 0 2773 2866 2897 14343;14344;14345 14668;14669 14669 2 AQNLNPMVDVK TGSVGRNRAEASLERAQNLNPMVDVKVDTE SLERAQNLNPMVDVKVDTEDIEKKPESFFT R A Q V K V 1 0 2 1 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1227.6282 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65;A0A590UKA0 Q9UBE0 99 109 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed no no 2 0.0020633 55.567 By MS/MS By MS/MS 1 1 1.0635 0.94102 0.059731 2 Median 1.0234 0.94062 NaN 1 0 Median 1.1052 0.94141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68860000 36666000 32194000 44393000 24506000 19887000 24467000 12160000 12307000 0 0 0 0 0 0 0 0 0 0 0 0 2774 4237 2898 14346;14347 14670;14671 14671 2 AQNSELASTANMLR LERIARLEEKVKTLKAQNSELASTANMLRE KAQNSELASTANMLREQVAQLKQKVMNHVN K A Q L R E 3 1 2 0 0 1 1 0 0 0 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1504.7304 P05412 P05412 289 302 JUN Transcription factor AP-1 yes yes 2 6.9774E-06 141.88 By MS/MS 1 0.95551 1.0441 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95551 1.0441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18401000 8936700 9464000 0 0 0 0 0 0 18401000 8936700 9464000 0 0 0 0 0 0 0 0 0 2775 1866 2899 14348 14672;14673 14673 2 AQNTWGCGNSLR GAGATHSPPTDLVWKAQNTWGCGNSLRTAL VWKAQNTWGCGNSLRTALINSTGEEVAMRK K A Q L R T 1 1 2 0 1 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 0 12 0 1362.6099 P02545;A0A0C4DGC5 P02545 516 527 LMNA Prelamin-A/C;Lamin-A/C no no 2 5.774E-06 161.17 By MS/MS 1 1.1052 1.1012 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1052 1.1012 NaN 1 0 Median NaN NaN NaN 0 0 Median 14930000 7268300 7661800 0 0 0 0 0 0 0 0 0 0 0 0 14930000 7268300 7661800 0 0 0 2776 1834 2900 14349 14674;14675 14675 2 AQNVTLEAILQNATSDNPVVQLSAVQAAR QEESLEDSDVDADFKAQNVTLEAILQNATS SDNPVVQLSAVQAARKLLSSDRNPPIDDLI K A Q A R K 6 1 3 1 0 4 1 0 0 1 3 0 0 0 1 2 2 0 0 4 0 0 29 0 3020.5891 O00505 O00505 68 96 KPNA3 Importin subunit alpha-4 yes yes 3 0.013443 15.641 By matching By MS/MS 1 1 0.8764 0.8468 10.044 2 Median NaN NaN NaN 0 0 Median 0.88941 0.78875 NaN 1 0 Median 0.86357 0.90913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2288500 1239800 1048700 0 0 0 401250 275110 126140 1887200 964720 922510 0 0 0 0 0 0 0 0 0 2777 1469 2901 14350;14351 14676 14676 1 AQPAITTGGSAAVLAGTIK PQPQTQPQPVQAPAKAQPAITTGGSAAVLA ITTGGSAAVLAGTIKTSVTGTSMPTGAVSG K A Q I K T 5 0 0 0 0 1 0 3 0 2 1 1 0 0 1 1 3 0 0 1 0 0 19 0 1725.9625 Q96L91 Q96L91 2599 2617 EP400 E1A-binding protein p400 yes yes 2 7.1218E-18 127.71 By MS/MS By matching 2 1 0.95156 0.90815 9.3398 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89019 0.96889 12.105 2 0 Median 0.98569 0.90815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17549000 9723200 7825600 0 0 0 0 0 0 17114000 9504700 7609500 434650 218500 216150 0 0 0 0 0 0 2778 3700 2902 14352;14353;14354 14677;14678 14678 2 AQPAQPADEPAEKADEPMEH VSPFLEGLEERPQRKAQPAQPADEPAEKAD PADEPAEKADEPMEH_______________ K A Q E H - 5 0 0 2 0 2 4 0 1 0 0 1 1 0 4 0 0 0 0 0 0 0 20 1 2159.943 P25786;F5GX11 P25786 244 263 PSMA1 Proteasome subunit alpha type-1 yes no 3 3.7968E-08 61.648 By MS/MS By MS/MS 1 2 0.64294 0.53702 11.127 3 Median 0.50967 0.46306 NaN 1 0 Median 0.66282 0.55606 4.9277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36732000 22171000 14561000 19671000 12447000 7223800 17061000 9724100 7337100 0 0 0 0 0 0 0 0 0 0 0 0 2779 2136 2903 14355;14356;14357 14679;14680;14681;14682;14683 14680 5 AQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLK LEPGADSVSMQAFSRAQPGAAPGIYQQSAE ANSQSYTIMSPAVLKSELQSPTHPSSALPP R A Q L K S 8 0 1 0 0 5 1 3 0 2 1 1 1 0 3 7 2 0 2 1 0 0 38 0 3766.8108 P98175 P98175 499 536 RBM10 RNA-binding protein 10 yes yes 3 1.9584E-06 37.468 By MS/MS By matching 2 1 0.58083 0.63543 3.1371 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57664 0.6278 1.7098 2 0 Median NaN NaN NaN 0 0 Median 0.63832 0.66008 NaN 1 0 Median NaN NaN NaN 0 0 Median 11065000 6660900 4403700 0 0 0 0 0 0 8093800 4967300 3126500 0 0 0 2970700 1693600 1277200 0 0 0 2780 2671 2904 14358;14359;14360 14684;14685;14686;14687 14686 4 AQPGTLNLNNEVVK ______________________________ MAQPGTLNLNNEVVKMRKEVKRIRVLVIRK M A Q V K M 1 0 3 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 2 0 0 14 0 1495.7995 Q8NEF9 Q8NEF9 2 15 SRFBP1 Serum response factor-binding protein 1 yes yes 2 0.00096414 54.776 By MS/MS 1 0.72143 0.71852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72143 0.71852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6091100 3958100 2132900 0 0 0 0 0 0 6091100 3958100 2132900 0 0 0 0 0 0 0 0 0 2781 3429 2905 14361 14688;14689 14689 2 AQPLEDLAGFTELSETSGHTQESLTAGK EEEPSRRRPRAPKEKAQPLEDLAGFTELSE SETSGHTQESLTAGKATKIPCESPPLEVVD K A Q G K A 3 0 0 1 0 2 4 3 1 0 4 1 0 1 1 3 4 0 0 0 0 0 28 0 2916.3989 P46013 P46013 2673 2700 MKI67 Antigen KI-67 yes yes 3 0.034784 11.65 By MS/MS By matching By matching 2 1 1 1.0233 1.0548 6.8932 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0233 1.1246 2.0813 2 0 Median 1.1544 0.99604 NaN 1 0 Median 0.97594 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median 12370000 6050700 6319500 0 0 0 0 0 0 10491000 5037000 5453800 226630 101710 124920 1652900 912010 740840 0 0 0 2782 2335 2906 14362;14363;14364;14365 14690;14691 14690 2 AQPLEDLAGLK ASVTGSKRHPKTKEKAQPLEDLAGLKELFQ TKEKAQPLEDLAGLKELFQTPVCTDKPTTH K A Q L K E 2 0 0 1 0 1 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1153.6343 P46013 P46013 1461 1471 MKI67 Antigen KI-67 yes no 2 0.00022785 73.985 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 5 1 4 0.81486 0.76283 26.467 14 Median NaN NaN NaN 0 0 Median 0.47126 0.42895 NaN 1 0 Median 0.88531 0.94283 17.53 3 0 Plateau 0.89183 0.80721 9.8442 5 0 Median 0.71296 0.74603 NaN 1 0 Median 0.63832 0.52832 22.407 4 0 Median 72570000 38034000 34536000 0 0 0 335480 238830 96645 53636000 28077000 25558000 7037700 3421100 3616600 7831100 4368100 3463000 3730000 1928500 1801500 2783 2335 2907 14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379 14692;14693;14694;14695;14696;14697;14698 14695 7 AQPLSLEELLAK SKKDEEDEHGDKKPKAQPLSLEELLAKKKA KPKAQPLSLEELLAKKKAEEEAEAKPKFLS K A Q A K K 2 0 0 0 0 1 2 0 0 0 4 1 0 0 1 1 0 0 0 0 0 0 12 0 1310.7446 Q9BUQ8;F8VVA2 Q9BUQ8 139 150 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.00067049 62.303 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 3 1.0819 0.96492 10.485 9 Median 1.0668 1.0559 NaN 1 0 Median 1.0423 0.90593 14.201 2 0 Median 0.81687 0.88626 NaN 1 0 Median 1.1555 0.98858 11.603 2 0 Median NaN NaN NaN 0 0 Median 1.1475 0.96492 11.652 3 0 Median 34164000 17559000 16605000 2954400 1415500 1538900 8930900 4155500 4775400 18525000 10285000 8240300 2362600 1115200 1247400 0 0 0 1390900 587540 803360 2784 3842 2908 14380;14381;14382;14383;14384;14385;14386;14387;14388 14699;14700;14701;14702;14703;14704;14705 14704 7 AQPSASLGVGYR TYRAQPSVSLGAAYRAQPSASLGVGYRTQP AYRAQPSASLGVGYRTQPMTAQAASYRAQP R A Q Y R T 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1204.62 Q96PK6 Q96PK6 251 262 RBM14 RNA-binding protein 14 yes yes 2 8.8717E-10 115.71 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 5 3 1.0936 0.96881 51.761 14 Median NaN NaN NaN 0 0 Median 0.50314 0.43803 NaN 1 0 Median 0.89782 0.90391 15.786 3 0 Median 1.2168 1.023 41.361 3 2 Median 0.81191 0.82337 76.885 4 2 Median 1.1632 0.99792 5.5646 3 0 Median 174960000 101970000 72984000 0 0 0 523780 284400 239390 43078000 22530000 20548000 13489000 5328800 8159900 101930000 66662000 35270000 15934000 7167700 8765900 2785 3712 2909 14389;14390;14391;14392;14393;14394;14395;14396;14397;14398;14399;14400;14401;14402;14403 14706;14707;14708;14709;14710;14711;14712;14713;14714;14715;14716;14717;14718;14719;14720;14721;14722;14723;14724 14714 18 AQPSVSLGAAYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP TYRAQPSVSLGAAYRAQPSASLGVGYRTQP R A Q Y R A 3 1 0 0 0 1 0 1 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1218.6357 Q96PK6 Q96PK6 239 250 RBM14 RNA-binding protein 14 yes yes 2 3.7171E-06 107.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 0.90177 0.87101 21.365 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88533 0.88797 11.892 2 0 Median 0.6326 0.52934 NaN 1 1 Median 0.85321 0.84386 8.9424 3 3 Median 1.1782 0.98191 12.47 2 2 Median 170260000 88045000 82216000 0 0 0 0 0 0 54605000 28762000 25842000 3461200 2062200 1398900 99936000 51761000 48175000 12259000 5459100 6799600 2786 3712 2910 14404;14405;14406;14407;14408;14409;14410;14411 14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735 14725 11 AQPSVSLGAPYR GYRTQPMTAQAASYRAQPSVSLGAPYRGQL SYRAQPSVSLGAPYRGQLASPSSQSAAASS R A Q Y R G 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 0 12 0 1244.6513 Q96PK6 Q96PK6 275 286 RBM14 RNA-binding protein 14 yes yes 2 4.0931E-06 129.38 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 1 0.75735 0.75351 61.095 10 Median NaN NaN NaN 0 0 Median 0.97613 0.84141 NaN 1 0 Median 0.80091 0.80383 7.8385 2 1 Median 1.028 0.87494 11.971 2 0 Median 0.60302 0.60878 87.473 4 1 Median 0.75742 0.61236 NaN 1 0 Median 147840000 90372000 57468000 0 0 0 384350 191540 192820 53757000 31896000 21861000 4623400 2481200 2142200 83536000 52495000 31041000 5539600 3308000 2231700 2787 3712 2911 14412;14413;14414;14415;14416;14417;14418;14419;14420;14421 14736;14737;14738;14739;14740;14741;14742;14743;14744;14745;14746;14747;14748;14749;14750 14738 15 AQPTPSSSATQSKPTPVKPNYALK ______________________________ TQSKPTPVKPNYALKFTLAGHTKAVSSVKF R A Q L K F 3 0 1 0 0 2 0 0 0 0 1 3 0 0 5 4 3 0 1 1 0 0 24 2 2497.3177 P61964;V9GZ59;V9GYQ5 P61964 15 38 WDR5 WD repeat-containing protein 5 yes no 3;4 4.685E-08 46.178 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 2 1 0.53056 0.48347 21.629 11 Median 0.63512 0.65125 NaN 1 0 Median 0.78959 0.78197 NaN 1 1 Median 0.42904 0.44283 11.544 3 0 Median 0.59271 0.55792 9.9798 3 0 Median 0.40548 0.44365 2.6899 2 0 Median 0.53056 0.45536 NaN 1 0 Median 102380000 67172000 35208000 8819400 5335300 3484100 1960100 1071700 888340 47787000 32283000 15504000 24987000 15642000 9345500 17533000 12014000 5519200 1293300 826440 466880 2788 2564 2912 14422;14423;14424;14425;14426;14427;14428;14429;14430;14431;14432 14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761;14762;14763 14754 13 AQPTTLVLPPQYVDDVISR RSANQMGVSAKRRPKAQPTTLVLPPQYVDD TLVLPPQYVDDVISRIDRMFPEMSIHLSRP K A Q S R I 1 1 0 2 0 2 0 0 0 1 2 0 0 0 3 1 2 0 1 3 0 0 19 0 2111.1263 Q6P2C8;A0A494C0K7;A0A494C0P0 Q6P2C8 150 168 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 2;3 0.00016117 40.113 By matching By MS/MS By matching 1 2 1 0.58936 0.56648 16.409 4 Median 0.5801 0.55902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56778 0.5462 7.0303 2 0 Median 0.89742 0.75592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3089400 1777600 1311900 826880 465230 361640 0 0 0 2019300 1179700 839690 243190 132670 110520 0 0 0 0 0 0 2789 460 2913 14433;14434;14435;14436 14764;14765 14764 2 AQPVPHYGVPFKPQIPEAR PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI PHYGVPFKPQIPEARTVEICPFSFDSRDKE K A Q A R T 2 1 0 0 0 2 1 1 1 1 0 1 0 1 5 0 0 0 1 2 0 0 19 1 2130.1374 Q9ULW0 Q9ULW0 513 531 TPX2 Targeting protein for Xklp2 yes yes 3 0.00064029 31.753 By MS/MS 1 0.60523 0.68592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60523 0.68592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12228000 7096700 5131000 0 0 0 0 0 0 12228000 7096700 5131000 0 0 0 0 0 0 0 0 0 2790 4330 2914 14437 14766;14767 14766 2 AQQAADKYLYVDK ______________________________ ______________________________ M A Q D K N 3 0 0 2 0 2 0 0 0 0 1 2 0 0 0 0 0 0 2 1 0 0 13 1 1511.762 P35579;Q5BKV1;B1AH99 P35579 2 14 MYH9 Myosin-9 yes no 2 1.6759E-05 145.91 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1809 1.1959 6.235 4 Median 1.2705 1.1637 NaN 1 0 Median 1.2807 1.2291 NaN 1 0 Median 1.0977 1.2714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0248 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median 120490000 53648000 66845000 90449000 39874000 50576000 8527300 3858500 4668700 13505000 6230600 7274200 0 0 0 8012100 3685900 4326300 0 0 0 2791 2244 2915 14438;14439;14440;14441 14768;14769;14770;14771;14772 14772 5 AQQAADKYLYVDKNFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA M A Q A K K 7 0 3 3 0 3 0 0 0 1 2 3 0 1 1 0 0 1 2 1 0 0 28 2 3165.5883 P35579;Q5BKV1;B1AH99 P35579 2 29 MYH9 Myosin-9 yes no 3 4.6623E-09 45.489 By MS/MS 1 1.0014 1.0964 NaN 1 Median 1.0014 1.0964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9788500 4494500 5294000 9788500 4494500 5294000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2792 2244 2916 14442 14773;14774 14774 2 AQQALSELHTVEK QTNFQQASAVGSSSRAQQALSELHTVEKAV SRAQQALSELHTVEKAVEMTDQLMVPTLGS R A Q E K A 2 0 0 0 0 2 2 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1452.7573 Q5T4S7;A0A0A0MSW0 Q5T4S7 1838 1850 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2;3 3.615E-16 192.38 By MS/MS By MS/MS By matching 2 2 1 1.0362 1.0206 8.2166 5 Median 1.0333 1.0362 2.1453 2 0 Median 1.0474 0.93585 1.9945 2 0 Median 1.0362 1.1332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115520000 54791000 60726000 31499000 15204000 16295000 81880000 38432000 43448000 2137800 1154200 983580 0 0 0 0 0 0 0 0 0 2793 3089 2917 14443;14444;14445;14446;14447 14775;14776;14777;14778;14779;14780 14780 6 AQQATPGGAAPTIFSR VRGAAGVTDGNEVAKAQQATPGGAAPTIFS QQATPGGAAPTIFSRILDKSLPADILYEDQ K A Q S R I 4 1 0 0 0 2 0 2 0 1 0 0 0 1 2 1 2 0 0 0 0 0 16 0 1571.8056 Q9BX68 Q9BX68 43 58 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 2 5.9927E-10 136.7 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.91828 0.82791 36.237 6 Median 0.58144 0.55925 13.325 2 1 Median 1.2994 1.0937 1.8519 2 0 Median 0.62594 0.63498 NaN 1 0 Median 1.4624 1.1528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104500000 54969000 49535000 54428000 31618000 22810000 43905000 19713000 24193000 4752200 3104700 1647400 1419400 533580 885830 0 0 0 0 0 0 2794 3877 2918 14448;14449;14450;14451;14452;14453 14781;14782;14783;14784;14785;14786;14787;14788;14789;14790 14785 10 AQQEDALAQQAFEEAR QRLDGMGCLEFDEERAQQEDALAQQAFEEA QQEDALAQQAFEEARRRTREFEDRDRSHRE R A Q A R R 5 1 0 1 0 4 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 16 0 1803.8388 Q13951;A0A494C0A9;J3KS23 Q13951 132 147 CBFB Core-binding factor subunit beta yes no 2 2.8373E-07 96.745 By matching By MS/MS By matching By matching 2 1 1 2 0.91436 0.77421 10.033 6 Median NaN NaN NaN 0 0 Median 0.97545 0.82334 10.885 2 0 Median 0.91791 0.87882 NaN 1 0 Median 0.87236 0.71253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92021 0.74408 7.7956 2 0 Median 6617600 3097100 3520600 0 0 0 1677500 860040 817500 4357100 1938100 2419000 279150 126380 152770 0 0 0 303820 172550 131280 2795 2848 2919 14454;14455;14456;14457;14458;14459 14791;14792 14792 2 AQQEFAAGVFSNPAVR RIHSLYRRTGASFQKAQQEFAAGVFSNPAV QQEFAAGVFSNPAVRTAAANAAAGAAENAF K A Q V R T 4 1 1 0 0 2 1 1 0 0 0 0 0 2 1 1 0 0 0 2 0 0 16 0 1690.8427 O14828 O14828 314 329 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 2 1.9097E-08 126.1 By MS/MS 4 0.85132 0.81637 11.021 4 Median 0.85132 0.81637 11.021 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54495000 29485000 25009000 54495000 29485000 25009000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2796 1498 2920 14460;14461;14462;14463 14793;14794;14795;14796;14797 14794 5 AQQEFATGVMSNK KVHGLYRTTGASFEKAQQEFATGVMSNKTV EKAQQEFATGVMSNKTVQTAAANAASTAAS K A Q N K T 2 0 1 0 0 2 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 13 0 1409.6609 O15126;A0A087WXB0;A0A087WU14 O15126 299 311 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 2 4.832E-07 128.01 By MS/MS By MS/MS 1 2 1.2768 1.1197 12.812 3 Median 1.0536 0.95722 NaN 1 0 Median 1.368 1.1754 6.8702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29882000 13403000 16479000 19830000 9286900 10543000 10052000 4115700 5936400 0 0 0 0 0 0 0 0 0 0 0 0 2797 1522 2921 14464;14465;14466 14798;14799;14800;14801;14802;14803 14801 6 AQQELEEQTR ELMERLKQIEEQTKKAQQELEEQTRRALEL EQTKKAQQELEEQTRRALELEQERKRAQSE K A Q T R R 1 1 0 0 0 3 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1230.584 P26038 P26038 361 370 MSN Moesin yes yes 2 0.00041689 122.13 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.0434 0.94775 8.7781 7 Median 1.0151 0.99689 2.3001 2 0 Median 1.0673 0.92634 3.1825 2 2 Median 1.1079 1.1296 NaN 1 0 Median 1.0708 0.90117 7.1272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19133000 8511700 10622000 1757000 769840 987200 6290600 3213400 3077200 10268000 4149300 6119000 817590 379130 438450 0 0 0 0 0 0 2798 2139 2922 14467;14468;14469;14470;14471;14472;14473 14804;14805;14806;14807;14808;14809;14810 14806 7 AQQELEEQTRR ELMERLKQIEEQTKKAQQELEEQTRRALEL QTKKAQQELEEQTRRALELEQERKRAQSEA K A Q R R A 1 2 0 0 0 3 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 11 1 1386.6852 P26038 P26038 361 371 MSN Moesin yes yes 2;3 3.3994E-05 84.658 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 0.83442 0.75782 56.447 7 Median 1.0191 1.0449 NaN 1 0 Median 0.79811 0.72484 6.2923 2 0 Median 1.017 1.1348 70.218 3 0 Plateau 0.317 0.29537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30445000 15946000 14499000 3021300 1409800 1611600 11368000 6458500 4909200 15463000 7708900 7754000 592660 368880 223780 0 0 0 0 0 0 2799 2139 2923 14474;14475;14476;14477;14478;14479;14480 14811;14812;14813;14814;14815;14816 14815 6 AQQEQELAADAFK EQHQKLWEEQLAAAKAQQEQELAADAFKEL AKAQQEQELAADAFKELDDDMDGTVSVTEL K A Q F K E 4 0 0 1 0 3 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 13 0 1447.6943 K7ELL7;P14314 K7ELL7 207 219 PRKCSH Glucosidase 2 subunit beta yes no 2 1.0534E-06 129.89 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.96833 0.89617 35.85 5 Median 0.96833 0.89617 NaN 1 0 Median 1.4559 1.2893 32.995 2 0 Median 0.62466 0.63439 NaN 1 0 Median 0.73589 0.75361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105430000 52462000 52972000 61689000 31743000 29946000 32236000 13417000 18819000 10789000 6895800 3893200 719260 405350 313910 0 0 0 0 0 0 2800 1378 2924 14481;14482;14483;14484;14485 14817;14818;14819;14820;14821 14818 5 AQQEVLQALEPQVDYLR LGSQACSNKNLEKLRAQQEVLQALEPQVDY QEVLQALEPQVDYLRNFTQGLVEDAPDGSD R A Q L R N 2 1 0 1 0 4 2 0 0 0 3 0 0 0 1 0 0 0 1 2 0 0 17 0 1999.0375 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5054 5070 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 3.9373E-07 86.005 By MS/MS By matching By MS/MS 2 1 2 0.89034 0.87623 42.05 5 Median 0.83046 0.81667 9.9869 2 0 Median 0.89034 0.75366 NaN 1 0 Median 1.1979 1.3424 60.324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23985000 12631000 11354000 19131000 10395000 8735700 2259500 1057900 1201600 2594600 1178000 1416600 0 0 0 0 0 0 0 0 0 2801 1220 2925 14486;14487;14488;14489;14490 14822;14823;14824;14825;14826 14824 5 AQQIHSQTSQQYPLYDLDLGK LKKSLLATMKTELQKAQQIHSQTSQQYPLY QTSQQYPLYDLDLGKFGEKVTQLTDRWQRI K A Q G K F 1 0 0 2 0 5 0 1 1 1 3 1 0 0 1 2 1 0 2 0 0 0 21 0 2432.1972 P15924 P15924 835 855 DSP Desmoplakin yes yes 3 1.693E-12 80.303 By MS/MS By matching By MS/MS By matching 1 3 3 1 0.52648 0.51987 29.095 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40976 0.43807 NaN 1 0 Median 0.48501 0.53035 12.942 3 0 Plateau 0.6558 0.68685 28.586 3 1 Plateau 1.1324 0.94631 NaN 1 0 Median 37294000 23688000 13606000 0 0 0 0 0 0 11558000 7749900 3808100 1923100 1154600 768580 23364000 14567000 8797300 448500 216280 232220 2802 2021 2926 14491;14492;14493;14494;14495;14496;14497;14498 14827;14828;14829;14830;14831;14832;14833 14830 7 AQQLEQIR ANQSARADNLIPGSRAQQLEQIRRDIRDFR NLIPGSRAQQLEQIRRDIRDFRSSAGLDKV R A Q I R R 1 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 984.53524 Q9NPH2 Q9NPH2 201 208 ISYNA1 Inositol-3-phosphate synthase 1 yes yes 2 0.0028236 104.45 By MS/MS By MS/MS 1 1 1.1655 1.0086 NaN 1 Median NaN NaN NaN 0 0 Median 1.1655 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6684300 3136600 3547700 0 0 0 6684300 3136600 3547700 0 0 0 0 0 0 0 0 0 0 0 0 2803 4052 2927 14499;14500 14834;14835 14835 2 AQQLLGQR KMEESQKELESYMMRAQQLLGQRESPGELI LESYMMRAQQLLGQRESPGELISKHKEALI R A Q Q R E 1 1 0 0 0 3 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 912.51411 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 864 871 SYNE2 Nesprin-2 yes no 2 0.014501 50.966 By MS/MS 1 0.72814 0.81069 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72814 0.81069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 467760 275350 192410 0 0 0 0 0 0 467760 275350 192410 0 0 0 0 0 0 0 0 0 2804 3521 2928 14501 14836 14836 1 AQQNLSWEEIAK YVQSQHQRKQKRQLRAQQNLSWEEIAKEYQ QLRAQQNLSWEEIAKEYQNEEDSLGGSRVV R A Q A K E 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 12 0 1415.7045 F8VVX6;Q5HYK3;F8VP53;F8VVW7 F8VVX6 61 72 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial yes no 2 0.015713 53.683 By MS/MS 1 0.86223 0.80908 NaN 1 Median 0.86223 0.80908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6853400 3022900 3830500 6853400 3022900 3830500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2805 1068 2929 14502 14837 14837 1 AQQNNVEHKVETFSGVYK VKLDGSRLIKVHLDKAQQNNVEHKVETFSG NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K A Q Y K K 1 0 2 0 0 2 2 1 1 0 0 2 0 1 0 1 1 0 1 3 0 0 18 1 2077.0229 P62081;A0A2R8Y623 P62081 161 178 RPS7 40S ribosomal protein S7 yes no 2;3;4 2.623E-24 189.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 4 1 1.1845 1.202 16.034 16 Median 1.1049 1.1176 5.5418 3 0 Median 1.1671 1.0649 25.154 3 0 Median 1.1832 1.1992 4.2949 3 0 Median 1.3414 1.2088 2.0837 2 0 Median 1.2321 1.3142 17.254 4 0 Median 1.8039 1.5656 NaN 1 0 Median 653680000 298820000 354850000 521340000 239890000 281450000 31381000 14351000 17029000 57226000 25631000 31595000 19714000 9137000 10577000 23334000 9528800 13805000 677340 279810 397530 2806 2568 2930 14503;14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516;14517;14518 14838;14839;14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850;14851;14852;14853;14854;14855;14856;14857;14858;14859;14860;14861;14862;14863 14844 26 AQQNNVEHKVETFSGVYKK VKLDGSRLIKVHLDKAQQNNVEHKVETFSG NVEHKVETFSGVYKKLTGKDVNFEFPEFQL K A Q K K L 1 0 2 0 0 2 2 1 1 0 0 3 0 1 0 1 1 0 1 3 0 0 19 2 2205.1178 P62081;A0A2R8Y623 P62081 161 179 RPS7 40S ribosomal protein S7 yes no 3;4;5 2.6653E-08 78.021 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1.1739 1.1582 30.28 10 Median 1.1028 1.1646 5.7712 3 0 Median 1.1547 1.1299 7.8828 3 0 Median 1.277 1.4409 59.214 2 0 Median 1.7789 1.6357 49.606 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 453310000 198410000 254900000 294260000 139890000 154360000 56010000 25809000 30201000 54085000 20624000 33461000 48958000 12087000 36870000 0 0 0 0 0 0 2807 2568 2931 14519;14520;14521;14522;14523;14524;14525;14526;14527;14528 14864;14865;14866;14867;14868;14869;14870;14871;14872;14873;14874;14875;14876;14877;14878;14879 14867 16 AQQQLAFLEGR SAPTAKAPPKATSTRAQQQLAFLEGRKKQL TSTRAQQQLAFLEGRKKQLLQAALRAKQKN R A Q G R K 2 1 0 0 0 3 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1259.6622 Q6P1N0 Q6P1N0 490 500 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 0.0063851 64.04 By MS/MS 1 0.71888 0.61167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71888 0.61167 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2736500 1507400 1229100 0 0 0 0 0 0 0 0 0 2736500 1507400 1229100 0 0 0 0 0 0 2808 3153 2932 14529 14880 14880 1 AQQSLELIQSK TEQNERQKVAGDLHKAQQSLELIQSKIVKA DLHKAQQSLELIQSKIVKAAGDTTVIENSD K A Q S K I 1 0 0 0 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1243.6772 Q86UP2;G3V4Y7;B7Z6P3;H0YJP2 Q86UP2 1286 1296 KTN1 Kinectin yes no 2 0.00018648 110.14 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 3 1 1.2786 1.0934 22.382 8 Median 1.6314 1.6669 22.207 2 0 Median 1.1161 0.98252 NaN 1 0 Median 1.0151 1.0466 NaN 1 0 Median 1.2868 1.0978 5.4992 3 2 Median NaN NaN NaN 0 0 Median 1.2706 1.0889 NaN 1 0 Median 79260000 36371000 42889000 15446000 5257400 10188000 1668200 821330 846900 55319000 27305000 28014000 5436300 2354300 3081900 0 0 0 1390500 632900 757600 2809 3280 2933 14530;14531;14532;14533;14534;14535;14536;14537 14881;14882;14883;14884;14885;14886;14887 14881 6 AQQVAVQEQEIAR QQIEEQRVQVQVVERAQQVAVQEQEIARRE ERAQQVAVQEQEIARREKELEARVRKPAEA R A Q A R R 3 1 0 0 0 4 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 13 0 1468.7634 O75955;A0A140T9R1;A0A140T9W4;A2AB09;A0A140T9X0;A0A140T907 O75955 262 274 FLOT1 Flotillin-1 yes no 2 5.7956E-11 164.43 By MS/MS By MS/MS 1 1 1.0578 0.956 18.145 2 Median 0.86901 0.84088 NaN 1 1 Median 1.2875 1.0869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14369000 7305600 7063200 7509900 4221300 3288600 6858900 3084300 3774600 0 0 0 0 0 0 0 0 0 0 0 0 2810 1712 2934 14538;14539 14888;14889;14890 14888 3 AQQVSQGLDVLTAK LRARGQGSSPVAMQKAQQVSQGLDVLTAKV KAQQVSQGLDVLTAKVENAARKLEAMTNSK K A Q A K V 2 0 0 1 0 3 0 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 14 0 1456.7886 P18206 P18206 353 366 VCL Vinculin yes yes 2 1.6232E-05 138.45 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.0674 1.0383 14.78 7 Median 1.2026 1.1579 9.018 3 0 Median 1.008 0.8714 4.147 2 0 Median 1.0095 1.0793 NaN 1 1 Median 1.0367 0.8791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121720000 58012000 63707000 74881000 35637000 39244000 35676000 17242000 18434000 9184700 4222600 4962100 1977000 909970 1067000 0 0 0 0 0 0 2811 2057 2935 14540;14541;14542;14543;14544;14545;14546 14891;14892;14893;14894;14895;14896 14891 6 AQSHSFPNYGLSHGLTSR VEPSALEQGFRQAYRAQSHSFPNYGLSHGL HSFPNYGLSHGLTSRQWWLDVVLQTFHLAG R A Q S R Q 1 1 1 0 0 1 0 2 2 0 2 0 0 1 1 4 1 0 1 0 0 0 18 0 1957.9395 Q9BSH5 Q9BSH5 55 72 HDHD3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 yes yes 3 7.9942E-13 109.72 By MS/MS 1 0.76294 0.72473 NaN 1 Median 0.76294 0.72473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21844000 11688000 10156000 21844000 11688000 10156000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2812 3814 2936 14547 14897;14898 14898 2 AQSLLQLWK RWTQVNQAIADQLQKAQSLLQLWKAYSNAH ADQLQKAQSLLQLWKAYSNAHGEAAARLKQ K A Q W K A 1 0 0 0 0 2 0 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 9 0 1085.6233 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3 Q8WXH0 5380 5388 SYNE2 Nesprin-2 yes no 2 0.006443 54.549 By MS/MS By matching 1 1 1.2407 1.1999 18.765 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97557 1.0508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5778 1.3702 NaN 1 0 Median 4746500 2512000 2234500 0 0 0 0 0 0 4576900 2440000 2136900 0 0 0 0 0 0 169580 71996 97585 2813 3521 2937 14548;14549 14899;14900 14900 2 AQSLLSTDREASIDILHSIVK ______________________________ TDREASIDILHSIVKRDIQENDEEAVQVKE R A Q V K R 2 1 0 2 0 1 1 0 1 3 3 1 0 0 0 4 1 0 0 1 0 0 21 1 2295.2434 O00231;J3QRY4 O00231 12 32 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 3 0.0075436 22.902 By MS/MS By matching By matching 1 1 1 1.1733 1.1005 14.092 3 Median 0.90272 0.90103 NaN 1 0 Median 1.1733 1.1005 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.225 1.1827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10628000 4937200 5691300 6204000 3093500 3110600 3360100 1423900 1936200 0 0 0 1064300 419820 644530 0 0 0 0 0 0 2814 1448 2938 14550;14551;14552 14901 14901 1 AQSLVISPPAPSPR SGKQESGSEIHVEVKAQSLVISPPAPSPRK KAQSLVISPPAPSPRKTPVASDQRRRSCKT K A Q P R K 2 1 0 0 0 1 0 0 0 1 1 0 0 0 4 3 0 0 0 1 0 0 14 0 1418.7882 P46013 P46013 573 586 MKI67 Antigen KI-67 yes yes 2 2.1292E-19 144.7 By MS/MS By MS/MS 2 4 0.66063 0.63378 85.41 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66215 0.70749 12.345 2 1 Median 0.6532 0.55748 104.02 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56544000 32471000 24073000 0 0 0 0 0 0 53133000 30432000 22701000 3411100 2038900 1372100 0 0 0 0 0 0 2815 2335 2939 14553;14554;14555;14556;14557;14558 14902;14903;14904;14905;14906 14902 5 AQSSQDAVSSMNLFDLGGQYLR TTGKHKGYGFIEYEKAQSSQDAVSSMNLFD VSSMNLFDLGGQYLRVGKAVTPPMPLLTPA K A Q L R V 2 1 1 2 0 3 0 2 0 0 3 0 1 1 0 4 0 0 1 1 0 0 22 0 2386.1223 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;H0YCP8 A0A0J9YVP6 252 273 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 4.3967E-14 90.334 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 4 3 1 1.0567 1.0164 17.228 17 Median 1.1919 1.2091 3.4161 2 0 Median 1.2394 1.1085 NaN 1 0 Median 1.037 1.0258 25.11 6 0 Median 1.2166 1.0187 2.8096 4 0 Linear 1.0211 1.0277 11.357 3 0 Plateau 1.0083 0.89163 NaN 1 0 Median 42189000 20111000 22078000 2279100 1127800 1151300 308830 123580 185250 32561000 15530000 17031000 2210000 992310 1217700 4719400 2280700 2438700 110820 55945 54879 2816 284 2940 14559;14560;14561;14562;14563;14564;14565;14566;14567;14568;14569;14570;14571;14572;14573;14574;14575 14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920 14915 14 AQSYEYVYR LQMLHTILSTGSPLKAQSYEYVYRCIKSSI TGSPLKAQSYEYVYRCIKSSILLGSISGGT K A Q Y R C 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 3 1 0 0 9 0 1177.5404 Q86V21 Q86V21 416 424 AACS Acetoacetyl-CoA synthetase yes yes 2 0.01317 45.68 By MS/MS 1 1.0018 0.86774 NaN 1 Median NaN NaN NaN 0 0 Median 1.0018 0.86774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4676400 2337400 2339100 0 0 0 4676400 2337400 2339100 0 0 0 0 0 0 0 0 0 0 0 0 2817 3284 2941 14576 14921 14921 1 AQTEGINISEEALNHLGEIGTK MLYTPQEMKQIIKIRAQTEGINISEEALNH ISEEALNHLGEIGTKTTLRYSVQLLTPANL R A Q T K T 2 0 2 0 0 1 4 3 1 3 2 1 0 0 0 1 2 0 0 0 0 0 22 0 2323.1656 Q9Y265;H7C4G5;J3QLR1 Q9Y265 379 400 RUVBL1 RuvB-like 1 yes no 2;3 1.7149E-25 134.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 1 2 1.1107 1.0171 7.903 10 Median 1.0658 0.98439 NaN 1 0 Median 1.2749 1.0775 NaN 1 0 Median 0.98082 0.9286 9.3109 3 0 Median 1.1596 1.0181 0.49741 2 0 Median 1.0928 1.0451 NaN 1 0 Median 1.2511 1.0433 10.26 2 0 Median 443590000 210050000 233540000 19874000 9177900 10696000 31828000 12949000 18879000 333550000 160750000 172800000 15322000 6820500 8501200 37835000 17921000 19914000 5182300 2435500 2746700 2818 4375 2942 14577;14578;14579;14580;14581;14582;14583;14584;14585;14586 14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936 14929 15 AQTEWNTGTWR KVHRIYRGAGGSFQKAQTEWNTGTWRNPPS SFQKAQTEWNTGTWRNPPSREAQYNNFSGN K A Q W R N 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 3 2 0 0 0 0 11 0 1348.616 Q969E2 Q969E2 186 196 SCAMP4 Secretory carrier-associated membrane protein 4 yes yes 2 2.603E-37 188.66 By MS/MS By MS/MS 2 2 0.93754 0.82952 77.212 4 Median 0.41013 0.39777 107.39 2 1 Median 1.0645 0.87572 11.117 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42011000 23797000 18215000 24735000 15779000 8956200 17276000 8017300 9258600 0 0 0 0 0 0 0 0 0 0 0 0 2819 3580 2943 14587;14588;14589;14590 14937;14938;14939;14940 14937 4 AQTGAPCLSFDIVR EELVMDEEAYVLYHRAQTGAPCLSFDIVRD RAQTGAPCLSFDIVRDHLGDNRTELPLTLY R A Q V R D 2 1 0 1 1 1 0 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 14 0 1533.761 Q9BQ67 Q9BQ67 60 73 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 0.0019258 45.879 By MS/MS By MS/MS 1 1 0.80458 0.74658 20.247 2 Median NaN NaN NaN 0 0 Median 1.0071 0.8615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64278 0.64699 NaN 1 0 Median NaN NaN NaN 0 0 Median 5179900 2406400 2773400 0 0 0 3005400 1456900 1548500 0 0 0 0 0 0 2174400 949490 1225000 0 0 0 2820 3784 2944 14591;14592 14941;14942 14941 2 AQTLPTSVVTITSESSPGK HEVSASTQSTPASSRAQTLPTSVVTITSES PTSVVTITSESSPGKREKDKEKDKEKRFSL R A Q G K R 1 0 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 19 0 1901.9946 Q01082;A0A087WUZ3 Q01082 2326 2344 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.8386E-10 95.264 By MS/MS By MS/MS By MS/MS 1 1 1 0.75893 0.69113 9.7888 3 Median NaN NaN NaN 0 0 Median 0.89172 0.77984 NaN 1 0 Median 0.58018 0.64243 NaN 1 0 Median 0.75893 0.69113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12017000 6709300 5308000 0 0 0 2238200 1107800 1130400 8749100 5008100 3741000 1030100 593450 436630 0 0 0 0 0 0 2821 2681 2945 14593;14594;14595 14943;14944;14945;14946;14947 14943 5 AQTLPTSVVTITSESSPGKR HEVSASTQSTPASSRAQTLPTSVVTITSES TSVVTITSESSPGKREKDKEKDKEKRFSLF R A Q K R E 1 1 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 20 1 2058.0957 Q01082;A0A087WUZ3 Q01082 2326 2345 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.2108E-20 141.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 1 0.77893 0.77872 18.01 10 Median 0.93765 0.93547 6.4656 3 0 Median 0.99467 0.91756 NaN 1 0 Median 0.65005 0.77872 5.4089 2 0 Median 0.75687 0.71772 3.3144 2 1 Median 0.52147 0.54159 NaN 1 0 Median 0.79719 0.70814 NaN 1 0 Median 263350000 148230000 115120000 49000000 23815000 25185000 20290000 9710900 10579000 181680000 108300000 73380000 8677100 4343900 4333200 2149300 1259600 889750 1549300 795170 754130 2822 2681 2946 14596;14597;14598;14599;14600;14601;14602;14603;14604;14605;14606 14948;14949;14950;14951;14952;14953;14954;14955;14956;14957;14958;14959;14960;14961;14962 14951 15 AQTSTDAPTSAPSAPPSTPTPSAGKR ANDGSFLQQFLKLQKAQTSTDAPTSAPSAP PSAPPSTPTPSAGKRSLLISRRTGLGLASL K A Q K R S 5 1 0 1 0 1 0 1 0 0 0 1 0 0 6 5 5 0 0 0 0 0 26 1 2480.2143 Q8IWZ8;V9GZ08;B4DVK3 Q8IWZ8 99 124 SUGP1 SURP and G-patch domain-containing protein 1 yes no 3 1.7682E-05 34.459 By MS/MS 1 0.49187 0.52243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49187 0.52243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2759200 1597100 1162000 0 0 0 0 0 0 2759200 1597100 1162000 0 0 0 0 0 0 0 0 0 2823 3330 2947 14607 14963 14963 1 AQTTAQASTPGQPPPQPQAPSHAAGQSALPQR ASSTAASPAHPAKLRAQTTAQASTPGQPPP QAPSHAAGQSALPQRLVLPSQAQARLPSGE R A Q Q R L 7 1 0 0 0 7 0 2 1 0 1 0 0 0 7 3 3 0 0 0 0 0 32 0 3175.5759 Q96L91 Q96L91 1556 1587 EP400 E1A-binding protein p400 yes yes 3 5.721E-09 51.758 By MS/MS By MS/MS 1 1 0.30176 0.29034 8.0617 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28914 0.30737 NaN 1 1 Median 0.31492 0.27425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9675600 8318400 1357200 0 0 0 0 0 0 7036600 6094100 942470 2639000 2224200 414750 0 0 0 0 0 0 2824 3700 2948 14608;14609 14964;14965 14964 2 AQTYELQESNVQLK EDYESSHFCPNVKLKAQTYELQESNVQLKL KAQTYELQESNVQLKLTIVNTVGFGDQINK K A Q L K L 1 0 1 0 0 3 2 0 0 0 2 1 0 0 0 1 1 0 1 1 0 0 14 0 1649.8261 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 107 120 SEPT10 Septin-10 yes no 2 1.8939E-11 178.46 By matching By MS/MS By MS/MS 1 2 2 0.90847 0.81676 13.133 5 Median 0.68205 0.65608 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9208 0.8949 6.7933 2 0 Median 0.92812 0.81493 0.31725 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66530000 33926000 32604000 2544600 1423200 1121400 0 0 0 44895000 22999000 21895000 19091000 9503500 9587500 0 0 0 0 0 0 2825 626 2949 14610;14611;14612;14613;14614 14966;14967;14968;14969;14970;14971;14972;14973 14969 8 AQVADVVVSR DPATHRQKLYTLQDKAQVADVVVSRWLRVT TLQDKAQVADVVVSRWLRVTVAGGVHISGL K A Q S R W 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 10 0 1042.5771 P49327;A0A0U1RQF0 P49327 1073 1082 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00039065 116.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.3731 1.1416 11.774 5 Median 1.0458 0.98131 NaN 1 0 Median 1.4289 1.1856 14.655 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3731 1.1416 NaN 1 0 Median 173970000 71688000 102280000 26968000 12275000 14694000 144270000 58241000 86031000 0 0 0 0 0 0 0 0 0 2732800 1172100 1560700 2826 2377 2950 14615;14616;14617;14618;14619;14620 14974;14975;14976;14977;14978;14979;14980;14981;14982;14983 14977 10 AQVALTEYVR CGLSDPAHVESLQEKAQVALTEYVRAQYPS SLQEKAQVALTEYVRAQYPSQPQRFGRLLL K A Q V R A 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 10 0 1148.619 P10588 P10588 331 340 NR2F6 Nuclear receptor subfamily 2 group F member 6 yes yes 2 0.00036244 107.57 By MS/MS By MS/MS 1 1 1.4268 1.3963 20.661 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1021 1.2065 NaN 1 0 Median 1.8472 1.616 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29643000 14497000 15146000 0 0 0 0 0 0 27596000 13738000 13859000 2046400 758690 1287700 0 0 0 0 0 0 2827 1940 2951 14621;14622 14984;14985;14986 14984 3 AQVAMSTLPVEDEESSESR ______________________________ MSTLPVEDEESSESRMVVTFLMSALESMCK M A Q S R M 2 1 0 1 0 1 4 0 0 0 1 0 1 0 1 4 1 0 0 2 0 0 19 0 2063.9317 P78347;C9J6M0 P78347 2 20 GTF2I General transcription factor II-I yes no 2;3 1.1163E-18 123.02 By matching By MS/MS By matching 1 4 2 0.66481 0.68799 11.382 7 Median 0.68698 0.68799 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58973 0.64855 5.5342 4 0 Median 0.87324 0.80791 11.588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33532000 20449000 13083000 1375300 676080 699180 0 0 0 31759000 19529000 12230000 397470 243610 153860 0 0 0 0 0 0 2828 2642 2952;2953 14623;14624;14625;14626;14627;14628;14629 14987;14988;14989;14990;14991 14987 1301 5 AQVAPVSALAPGGNSGNPIYDFFLGR ATLTAFIFSLFLYMKAQVAPVSALAPGGNS GGNSGNPIYDFFLGRELNPRICFFDFKYFC K A Q G R E 4 1 2 1 0 1 0 4 0 1 2 0 0 2 3 2 0 0 1 2 0 0 26 0 2617.3289 O76062;E9PRQ1;E9PS09;E9PLI3 O76062 152 177 TM7SF2 Delta(14)-sterol reductase yes no 3 0.0051883 24.831 By MS/MS 1 0.48686 0.46572 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48686 0.46572 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1156700 819840 336840 0 0 0 0 0 0 1156700 819840 336840 0 0 0 0 0 0 0 0 0 2829 1719 2954 14630 14992 14992 1 AQVARPGGDTIFGK ______________________________ KAQVARPGGDTIFGKIIRKEIPAKIIFEDD K A Q G K I 2 1 0 1 0 1 0 3 0 1 0 1 0 1 1 0 1 0 0 1 0 0 14 1 1415.7521 P49773;D6RC06;D6REP8;D6RE99;D6RD60 P49773 8 21 HINT1 Histidine triad nucleotide-binding protein 1 yes no 2;3 2.9987E-10 171.49 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.012 0.91474 9.0524 8 Median 0.95199 0.93352 3.0007 2 0 Median 1.0307 0.91001 0.64978 3 0 Median 0.93434 0.96506 9.6181 2 0 Median 1.4304 1.1632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2714000000 1336800000 1377200000 913230000 459090000 454140000 1737400000 846520000 890880000 62316000 30779000 31536000 1090200 440760 649470 0 0 0 0 0 0 2830 2399 2955 14631;14632;14633;14634;14635;14636;14637;14638 14993;14994;14995;14996;14997;14998;14999;15000;15001;15002;15003;15004;15005;15006;15007;15008;15009;15010;15011;15012 15006 20 AQVEEFLAQHGSEYQSVK KHMRLFIHNHEQHHKAQVEEFLAQHGSEYQ EEFLAQHGSEYQSVKLVGPEVRMANADARN K A Q V K L 2 0 0 0 0 3 3 1 1 0 1 1 0 1 0 2 0 0 1 2 0 0 18 0 2048.9803 Q02809 Q02809 331 348 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 3 0.0014022 43.946 By MS/MS 1 0.38975 0.38822 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38975 0.38822 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26317000 19769000 6547300 0 0 0 0 0 0 26317000 19769000 6547300 0 0 0 0 0 0 0 0 0 2831 2702 2956 14639 15013 15013 1 AQVEQELTTLR MEKHKKFAEQTLRQKAQVEQELTTLRLQLE LRQKAQVEQELTTLRLQLEETDHQKNLLDE K A Q L R L 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 11 0 1286.683 Q15149 Q15149 2319 2329 PLEC Plectin yes yes 2 2.1599E-06 161.76 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2019 0.96935 20.988 5 Median 1.2019 1.1618 NaN 1 0 Median 0.8864 0.80857 25.648 2 1 Median NaN NaN NaN 0 0 Median 1.2377 1.0787 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0975 0.9073 NaN 1 1 Median 152120000 70002000 82114000 50014000 22718000 27296000 85656000 40032000 45624000 0 0 0 6525200 2719700 3805500 0 0 0 9920300 4531700 5388600 2832 2933 2957 14640;14641;14642;14643;14644 15014;15015;15016;15017;15018 15015 5 AQVIYTR ELLSKGLIKLVSKHRAQVIYTRNTKGGDAP IKLVSKHRAQVIYTRNTKGGDAPAAGEDA_ R A Q T R N 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 7 0 849.47085 P62851 P62851 105 111 RPS25 40S ribosomal protein S25 yes yes 2 0.016334 68.915 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.377 1.2648 13.605 4 Median 1.1549 1.1173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5151 1.5364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2515 1.3191 NaN 1 0 Median 1.5416 1.2127 NaN 1 0 Median 21926000 10151000 11775000 13931000 6537900 7393100 0 0 0 7247400 3295500 3952000 0 0 0 455070 199850 255230 292240 117970 174260 2833 2600 2958 14645;14646;14647;14648 15019;15020;15021;15022 15020 4 AQVLSLYR ______________________________ ______________________________ R A Q Y R A 1 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 948.53927 Q9HD34;C9JY28;C9JRX8;F5H189;C9J799 Q9HD34 7 14 LYRM4 LYR motif-containing protein 4 yes no 2 0.0023555 114.78 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3345 1.1162 23.914 4 Median 0.92555 0.8985 NaN 1 0 Median 1.346 1.1162 19.542 2 0 Median 1.4817 1.5014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32059000 14150000 17909000 16794000 8271300 8522900 11575000 4584400 6991000 3689600 1294600 2394900 0 0 0 0 0 0 0 0 0 2834 4036 2959 14649;14650;14651;14652;14653 15023;15024;15025;15026;15027 15024 5 AQVMEVK QTMLSKRLAHCEELRAQVMEVKALPGMGTT LAHCEELRAQVMEVKALPGMGTTIDVILIN R A Q V K A 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 7 0 803.42112 A0A087WUT6;O60841 A0A087WUT6 858 864 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.061387 47.743 By MS/MS 1 2.0703 1.8222 NaN 1 Median NaN NaN NaN 0 0 Median 2.0703 1.8222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1669900 466660 1203300 0 0 0 1669900 466660 1203300 0 0 0 0 0 0 0 0 0 0 0 0 2835 35 2960 14654 15028 15028 1 AQVPSSLGSLFNK LNLAENPAMTRELLRAQVPSSLGSLFNKKE LRAQVPSSLGSLFNKKENKEVILKLLVIFE R A Q N K K 1 0 1 0 0 1 0 1 0 0 2 1 0 1 1 3 0 0 0 1 0 0 13 0 1346.7194 Q9UH62 Q9UH62 283 295 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.0014995 52.79 By MS/MS By matching By matching By matching 1 2 1 1 0.90381 0.78722 26.187 5 Median 0.83899 0.78722 NaN 1 0 Median 1.0786 0.91991 25.81 2 0 Median NaN NaN NaN 0 0 Median 1.2517 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68115 0.59908 NaN 1 0 Median 5138200 2739100 2399100 3075900 1689300 1386600 1666600 848920 817700 0 0 0 100240 41852 58390 0 0 0 295440 158990 136450 2836 4269 2961 14655;14656;14657;14658;14659 15029 15029 1 AQVQLQLFK EEADRYQRLKDEVVRAQVQLQLFKLYHNEV KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL R A Q F K L 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 Q14683;G8JLG1;H0Y7K8 Q14683 219 227 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00094954 88.942 By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 0.98039 0.96413 14.232 8 Median 1.2558 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92172 0.98226 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.90254 0.94634 13.238 3 0 Median 1.0662 0.91138 12.638 3 0 Median 88574000 43464000 45109000 9796500 4228000 5568500 0 0 0 22690000 11558000 11131000 0 0 0 53793000 26490000 27303000 2294400 1187700 1106700 2837 2889 2962 14660;14661;14662;14663;14664;14665;14666;14667 15030;15031;15032;15033;15034;15035;15036 15031 7 AQVSLLIR SVVAKFNASQLITQRAQVSLLIRRELTERA SQLITQRAQVSLLIRRELTERAKDFSLILD R A Q I R R 1 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 8 0 898.56 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6 J3KPX7 158 165 PHB2 Prohibitin-2 yes no 2 0.002615 125.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1.6097 1.3439 23.667 8 Median 1.3517 1.2972 37.428 2 0 Median 1.5358 1.2945 3.533 2 0 Median 1.1551 1.1251 NaN 1 0 Median 1.7479 1.4578 NaN 1 0 Median 1.9968 2.1341 NaN 1 0 Median 1.6683 1.3608 NaN 1 0 Median 568330000 273530000 294810000 459610000 229560000 230050000 84717000 33809000 50908000 12701000 6093200 6607400 3674800 1372900 2301900 3092500 989350 2103200 4536900 1703000 2833900 2838 1313 2963 14668;14669;14670;14671;14672;14673;14674;14675 15037;15038;15039;15040;15041;15042;15043;15044;15045 15038 9 AQVSLNVLNDLAK TLKTLKDVLNDSENKAQVSLNVLNDLAKVE NKAQVSLNVLNDLAKVEKALQEKKTLDEIL K A Q A K V 2 0 2 1 0 1 0 0 0 0 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1383.7722 P46939 P46939 930 942 UTRN Utrophin yes yes 2 0.0009775 61.353 By matching By MS/MS 1 1 0.90123 0.83982 3.898 2 Median 0.82664 0.81699 NaN 1 0 Median 0.98256 0.86329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9769800 4928600 4841200 1718100 1031800 686300 8051700 3896800 4154900 0 0 0 0 0 0 0 0 0 0 0 0 2839 2349 2964 14676;14677 15046 15046 1 AQVVDLLQQELTAAEQR LQRKLEEHEESLVGRAQVVDLLQQELTAAE VVDLLQQELTAAEQRNQILSQQLQQMEAEH R A Q Q R N 3 1 0 1 0 4 2 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 17 0 1911.0062 Q14789;E7EU81;H0Y867 Q14789 272 288 GOLGB1 Golgin subfamily B member 1 yes no 2;3 6.7118E-06 83.314 By MS/MS By MS/MS 3 4 1.0961 1.0533 86.46 7 Median 1.0522 1.0535 2.699 3 0 Median 1.1747 1.0177 122.22 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24760000 11347000 13413000 8696800 3863500 4833300 16063000 7483600 8579800 0 0 0 0 0 0 0 0 0 0 0 0 2840 2900 2965 14678;14679;14680;14681;14682;14683;14684 15047;15048;15049;15050;15051 15049 5 AQVVSNLK AGVEMAGQAPSQEDRAQVVSNLKGISMSSS APSQEDRAQVVSNLKGISMSSSKLLLAAKA R A Q L K G 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 857.49707 Q9Y490 Q9Y490 1299 1306 TLN1 Talin-1 yes yes 2 0.076219 29.149 By matching By MS/MS By matching By matching 1 3 1 1 1.3213 1.2584 13.542 6 Median 1.1896 1.209 NaN 1 0 Median 1.4677 1.3505 18.229 3 0 Median 0.96654 1.0655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5256 1.3098 NaN 1 0 Median 6062400 2432300 3630100 725660 329550 396110 4076200 1630800 2445300 387970 166260 221710 0 0 0 0 0 0 872640 305710 566930 2841 4441 2966 14685;14686;14687;14688;14689;14690 15052 15052 1 AQWGSNMQVTLIPTHDSEVMR EEPSRAVLDALLEGKAQWGSNMQVTLIPTH MQVTLIPTHDSEVMREWYQETHEKQQDLNI K A Q M R E 1 1 1 1 0 2 1 1 1 1 1 0 2 0 1 2 2 1 0 2 0 0 21 0 2399.1362 P46821 P46821 2410 2430 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.015068 16.93 By matching By MS/MS 1 1 1.0081 0.98448 1.0007 2 Median 1.0217 0.99147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99465 0.97754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3953500 1897900 2055600 1260200 662190 597990 0 0 0 2693300 1235700 1457600 0 0 0 0 0 0 0 0 0 2842 2347 2967 14691;14692 15053 15053 1 AQWNQLQQLDTR ______________________________ ______________________________ M A Q T R Y 1 1 1 1 0 4 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 12 0 1499.7481 P40763 P40763 2 13 STAT3 Signal transducer and activator of transcription 3 yes yes 2 0.00019225 85.958 By MS/MS By matching 1 1 1.0695 0.96014 7.5486 2 Median 0.95776 0.91023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1943 1.0128 NaN 1 0 Median 6690700 3014100 3676600 6598100 2978100 3620000 0 0 0 0 0 0 0 0 0 0 0 0 92559 35938 56621 2843 2289 2968 14693;14694 15054;15055 15055 2 AQYDELAR APKSQDLAKIMADIRAQYDELARKNREELD KIMADIRAQYDELARKNREELDKYWSQQIE R A Q A R K 2 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 964.46141 P05783;F8VZY9 P05783 254 261 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.0028201 129.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 6 1.3058 1.1656 27.052 18 Median 1.3306 1.2843 27.589 2 0 Median 1.4298 1.2213 12.547 2 0 Median 1.2473 1.1972 8.2505 3 0 Plateau 1.3262 1.1299 14.68 2 1 Median 1.3837 1.3711 49.612 3 0 Median 1.2812 1.0454 8.8912 6 0 Median 670380000 291310000 379070000 39956000 17854000 22102000 72268000 28839000 43429000 147950000 64357000 83593000 136310000 60915000 75391000 103220000 43907000 59310000 170680000 75437000 95242000 2844 1869 2969 14695;14696;14697;14698;14699;14700;14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712 15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085;15086 15077 31 AQYDELARK APKSQDLAKIMADIRAQYDELARKNREELD IMADIRAQYDELARKNREELDKYWSQQIEE R A Q R K N 2 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 1 1092.5564 P05783;F8VZY9 P05783 254 262 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.00088299 109.01 By matching By MS/MS By MS/MS 1 1 1 1.1876 1.1344 16.909 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5287 1.4745 NaN 1 0 Median 1.092 1.1344 NaN 1 0 Median 1.1876 1.075 NaN 1 0 Median 6921500 2953700 3967800 0 0 0 0 0 0 0 0 0 1266400 491470 774910 2284600 965660 1319000 3370500 1496600 1873900 2845 1869 2970 14713;14714;14715 15087;15088;15089 15089 3 AQYEDIANR NSRSLDMDSIIAEVKAQYEDIANRSRAEAE IIAEVKAQYEDIANRSRAEAESMYQIKYEE K A Q N R S 2 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1078.5043 P05787;CON__P05787;F8VUG2 P05787 265 273 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.00020616 141.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 3 6 6 1.3366 1.2817 92.535 15 Median 1.885 1.9927 129.19 4 1 Median 1.5722 1.3422 25.806 2 1 Median 1.1767 1.1559 136.6 3 0 Median 1.3272 1.1397 NaN 1 0 Median 2.8494 3.2504 59.493 3 0 Median 1.2127 1.0012 1.4306 2 0 Median 801320000 330120000 471190000 64619000 26611000 38008000 95441000 37870000 57572000 129540000 56157000 73383000 47757000 19891000 27866000 222930000 86256000 136670000 241030000 103340000 137700000 + 2846 750 2971 14716;14717;14718;14719;14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733;14734;14735;14736;14737;14738;14739;14740 15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112;15113;15114;15115;15116;15117;15118;15119;15120 15099 31 AQYEDIAQK NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE IIAEVKAQYEDIAQKSKAEAESLYQSKYEE K A Q Q K S 2 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1064.5138 P04264 P04264 356 364 KRT1 Keratin, type II cytoskeletal 1 yes yes 2 0.00022729 114.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 9 5 7 6 4 0.037383 0.033381 105.69 34 Median 0.041738 0.038846 50.633 6 6 Median 0.019885 0.017215 53.8 8 8 Median 0.044753 0.048488 72.698 5 5 Median 0.019185 0.017261 114.73 6 6 Median 0.061865 0.060558 92.435 6 6 Median 0.067756 0.055582 250.18 3 3 Median 597420000 577540000 19874000 78192000 75587000 2604400 137570000 134570000 2998200 38417000 37398000 1019100 79925000 77488000 2436400 99160000 89900000 9260000 164150000 162600000 1555800 + 2847 1848 2972 14741;14742;14743;14744;14745;14746;14747;14748;14749;14750;14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761;14762;14763;14764;14765;14766;14767;14768;14769;14770;14771;14772;14773;14774;14775;14776;14777;14778;14779 15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148;15149;15150;15151;15152;15153;15154;15155;15156;15157;15158;15159;15160;15161;15162 15153 42 AQYEEIANR NNRNLDLDSIIAEVKAQYEEIANRSRTEAE IIAEVKAQYEEIANRSRTEAESWYQTKYEE K A Q N R S 2 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1092.52 CON__P13647;P13647;H0YI76;H0YIN9 CON__P13647 344 352 KRT5 Keratin, type II cytoskeletal 5 yes no 2 8.1027E-08 137.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 9 5 2 0.11885 0.10601 92.411 22 Median 0.20641 0.20305 44.638 4 4 Median 0.47 0.38091 62.795 4 4 Linear 0.17549 0.17714 69.232 2 2 Median 0.08041 0.06893 54.748 6 6 Median 0.082985 0.084172 68.972 4 4 Median 0.026183 0.021042 188.2 2 2 Median 95711000 85045000 10666000 9108200 7197200 1910900 16474000 14106000 2367800 5776900 4746900 1030000 22021000 21029000 992350 30408000 26620000 3787800 11923000 11346000 576690 + 2848 757 2973 14780;14781;14782;14783;14784;14785;14786;14787;14788;14789;14790;14791;14792;14793;14794;14795;14796;14797;14798;14799;14800;14801;14802;14803;14804;14805;14806 15163;15164;15165;15166;15167;15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180;15181;15182;15183;15184;15185;15186;15187;15188;15189 15171 27 AQYEEIAQR NSRNLDLDSIIAEVKAQYEEIAQRSKEEAE IIAEVKAQYEEIAQRSKEEAEALYHSKYEE K A Q Q R S 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1106.5356 CON__P02538;P02538;CON__P04259;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__ENSEMBL:ENSBTAP00000038253;CON__P19013;P19013 CON__P35908 360 368 KRT6A;KRT6C;KRT2;KRT4 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 4 no no 2 2.2563E-35 181.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 10 6 8 4 3 0.041494 0.038753 88.428 36 Median 0.045079 0.043582 89.696 8 8 Median 0.018662 0.014902 103.05 9 9 Median 0.061807 0.067972 64.067 5 5 Median 0.033055 0.027215 63.448 7 7 Median 0.036863 0.037773 58.38 4 4 Median 0.12092 0.09793 33.878 3 3 Median 499400000 478220000 21178000 88176000 84461000 3715400 159520000 154530000 4989300 35647000 33665000 1982300 90973000 87390000 3582700 101410000 96641000 4768400 23672000 21533000 2139500 + 2849 764;765;741;748;766;735;761 2974 14807;14808;14809;14810;14811;14812;14813;14814;14815;14816;14817;14818;14819;14820;14821;14822;14823;14824;14825;14826;14827;14828;14829;14830;14831;14832;14833;14834;14835;14836;14837;14838;14839;14840;14841;14842;14843;14844;14845 15190;15191;15192;15193;15194;15195;15196;15197;15198;15199;15200;15201;15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221;15222;15223;15224;15225;15226;15227;15228;15229;15230 15209 41 AQYEQTLAELHR QERVERCAKEAEKTKAQYEQTLAELHRYTP KTKAQYEQTLAELHRYTPRYMEDMEQAFET K A Q H R Y 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 0 1 0 1 0 0 0 12 0 1457.7263 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 204 215 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2;3 2.2232E-07 120.68 By MS/MS By MS/MS By MS/MS 2 2 1 1.293 1.2909 11.82 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0966 1.0853 2.515 2 1 Median 1.5861 1.3593 3.9869 2 2 Median 1.293 1.2909 NaN 1 1 Median NaN NaN NaN 0 0 Median 51711000 23714000 27998000 0 0 0 0 0 0 30960000 16134000 14825000 10040000 3960900 6078700 10712000 3618400 7093500 0 0 0 2850 244 2975 14846;14847;14848;14849;14850 15231;15232;15233;15234;15235;15236 15233 6 AQYPIADLVK NSIIITPGYGLCAAKAQYPIADLVKMLTEQ LCAAKAQYPIADLVKMLTEQGKKVRFGIHP K A Q V K M 2 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1116.6179 Q13423;E9PCX7;A0A590UK15 Q13423 940 949 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.041168 45.368 By MS/MS 1 0.5595 0.56103 NaN 1 Median 0.5595 0.56103 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14353000 9082500 5270300 14353000 9082500 5270300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2851 2814 2976 14851 15237 15237 1 AQYSLPGILHFLQHEWAR AAAAGDGAAAAGAARAQYSLPGILHFLQHE SLPGILHFLQHEWARFEVERAQWEVERAEL R A Q A R F 2 1 0 0 0 2 1 1 2 1 3 0 0 1 1 1 0 1 1 0 0 0 18 0 2165.117 O43815 O43815 45 62 STRN Striatin yes yes 3 0.010428 32.091 By MS/MS 1 1.0649 0.97528 NaN 1 Median NaN NaN NaN 0 0 Median 1.0649 0.97528 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 563280 189030 374250 0 0 0 563280 189030 374250 0 0 0 0 0 0 0 0 0 0 0 0 2852 1593 2977 14852 15238 15238 1 AQYYLPDGSTIEIGPSR LSINPQKDETLETEKAQYYLPDGSTIEIGP YYLPDGSTIEIGPSRFRAPELLFRPDLIGE K A Q S R F 1 1 0 1 0 1 1 2 0 2 1 0 0 0 2 2 1 0 2 0 0 0 17 0 1865.9159 P61163;R4GMT0 P61163 239 255 ACTR1A Alpha-centractin yes no 2 9.3121E-14 148.62 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 1 0.84573 0.83276 14.629 8 Median 0.77937 0.77775 7.0863 2 0 Median 0.93041 0.8117 NaN 1 0 Median 0.75645 0.82576 9.9849 2 0 Median 1.184 1.0015 23.508 2 0 Median 0.87254 0.93264 NaN 1 0 Median NaN NaN NaN 0 0 Median 67854000 36301000 31552000 16699000 8645100 8054100 11049000 5509300 5539300 29591000 17017000 12574000 8954900 4353900 4601000 1560300 776010 784280 0 0 0 2853 2547 2978 14853;14854;14855;14856;14857;14858;14859;14860 15239;15240;15241;15242;15243;15244;15245;15246;15247;15248;15249;15250 15246 12 ARDDLITDLLNEAK QMSNLMNQARLKVLRARDDLITDLLNEAKQ RARDDLITDLLNEAKQRLSKVVKDTTRYQV R A R A K Q 2 1 1 3 0 0 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 14 1 1585.8312 P36543;C9J8H1 P36543 86 99 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 2 0.052223 69.01 By MS/MS By MS/MS 2 1 3.5931 3.218 68.362 3 Plateau NaN NaN NaN 0 0 Median 2.1864 1.9812 81.949 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1931 1.0571 NaN 1 0 Median 26473000 12361000 14112000 0 0 0 23029000 10589000 12440000 0 0 0 0 0 0 0 0 0 3444600 1772400 1672200 2854 2258 2979 14861;14862;14863 15251;15252 15252 1 ARDINAVLIDMER DSSALNLAKNIGLTKARDINAVLIDMERQG TKARDINAVLIDMERQGDVYRQGTTPPIWH K A R E R Q 2 2 1 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 13 1 1514.7875 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 327 339 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 0.00043839 63.408 By matching By MS/MS By matching 1 3 2 1.1013 1.0914 19.524 6 Median NaN NaN NaN 0 0 Median 1.342 1.3295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.024 1.1126 19.141 3 0 Median 1.069 0.95569 16.062 2 0 Median 11994000 5567600 6426700 0 0 0 401850 166000 235850 0 0 0 0 0 0 11351000 5297100 6053800 241590 104540 137050 2855 2498 2980 14864;14865;14866;14867;14868;14869 15253;15254;15255 15254 3 ARDPHSGHFVALK PVAEIGVGAYGTVYKARDPHSGHFVALKSV YKARDPHSGHFVALKSVRVPNGGGGGGGLP K A R L K S 2 1 0 1 0 0 0 1 2 0 1 1 0 1 1 1 0 0 0 1 0 0 13 1 1433.7528 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8;F8VYY1 P11802 23 35 CDK4 Cyclin-dependent kinase 4 yes no 3 0.001022 45.115 By MS/MS By MS/MS 1 1 1.0604 1.0071 2.0174 2 Median 1.0334 1.0215 NaN 1 0 Median 1.0881 0.9928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2559800 1252700 1307200 1330800 590360 740460 1229000 662290 566730 0 0 0 0 0 0 0 0 0 0 0 0 2856 1971 2981 14870;14871 15256;15257 15257 2 ARDSLIQSLATQLELDGFER GRLQLQADRHQEHIRARDSLIQSLATQLEL IQSLATQLELDGFERGPFSERQIKNFHKLV R A R E R G 2 2 0 2 0 2 2 1 0 1 4 0 0 1 0 2 1 0 0 0 0 0 20 1 2261.1652 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 366 385 RAD50 DNA repair protein RAD50 yes no 3 0.068685 7.9922 By MS/MS 1 0.65857 0.80096 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65857 0.80096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 626980 349710 277270 0 0 0 0 0 0 626980 349710 277270 0 0 0 0 0 0 0 0 0 2857 3561 2982 14872 15258 15258 1 ARDYDAMGSQTK KATGKISKLGRSFTRARDYDAMGSQTKFVQ FTRARDYDAMGSQTKFVQCPDGELQKRKEV R A R T K F 2 1 0 2 0 1 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 12 1 1341.5983 Q9Y230;M0R0Y3 Q9Y230 212 223 RUVBL2 RuvB-like 2 yes no 3 0.010857 26.969 By MS/MS 1 1.1082 1.1191 NaN 1 Median 1.1082 1.1191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1951000 949910 1001100 1951000 949910 1001100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2858 4368 2983 14873 15259 15259 1 ARENPSEEAQNLVEFTDEEGYGR EICVPMSVEFEELLKARENPSEEAQNLVEF AQNLVEFTDEEGYGRYLDLHDCYLKYINLK K A R G R Y 2 2 2 1 0 1 6 2 0 0 1 0 0 1 1 1 1 0 1 1 0 0 23 1 2639.1736 Q12874 Q12874 116 138 SF3A3 Splicing factor 3A subunit 3 yes yes 3 3.3706E-24 108.4 By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 1 0.81528 0.85512 23.335 7 Median 1.1547 1.1377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81528 0.88055 NaN 1 0 Median 0.91061 0.84313 11.251 2 0 Median 0.75479 0.81773 6.3229 2 0 Median 0.59559 0.52656 NaN 1 0 Median 24350000 12407000 11942000 3693400 1501300 2192200 0 0 0 9650600 4924200 4726300 940710 468090 472620 9876500 5394100 4482400 188350 119390 68960 2859 2767 2984 14874;14875;14876;14877;14878;14879;14880 15260;15261;15262;15263 15263 4 AREQAEAEVASLNR ERAERLQREVEGERRAREQAEAEVASLNRR RAREQAEAEVASLNRRIQLVEEELDRAQER R A R N R R 4 2 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 14 1 1542.775 A0A087WWU8;D6R904;A0A494C0G0 A0A087WWU8 41 54 TPM3 yes no 2;3 1.4339E-07 132.24 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.1177 0.96834 19.521 9 Median 0.95758 1.0309 21.866 2 0 Median 1.1887 1.0941 11.634 3 0 Median 0.7067 0.73518 8.7117 2 0 Median 1.1381 1.0403 10.555 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43578000 21636000 21942000 8189000 3770800 4418200 19556000 8792800 10763000 11797000 7303000 4493900 4036600 1769700 2266900 0 0 0 0 0 0 2860 63 2985 14881;14882;14883;14884;14885;14886;14887;14888;14889 15264;15265;15266;15267;15268;15269;15270;15271;15272;15273;15274 15271 11 AREQAEAEVASLNRR ERAERLQREVEGERRAREQAEAEVASLNRR AREQAEAEVASLNRRIQLVEEELDRAQERL R A R R R I 4 3 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 15 2 1698.8761 A0A087WWU8;D6R904;A0A494C0G0 A0A087WWU8 41 55 TPM3 yes no 3;4 2.0068E-05 78.932 By MS/MS By MS/MS 2 2 1.33 1.2862 33.61 4 Median 1.33 1.2862 6.3395 2 1 Median 1.1637 1.1707 57.098 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23178000 10015000 13163000 10215000 3776900 6438300 12962000 6238200 6724200 0 0 0 0 0 0 0 0 0 0 0 0 2861 63 2986 14890;14891;14892;14893 15275;15276;15277;15278;15279 15279 5 ARETGGAEGTGDAVLGEK ______________________________ TGGAEGTGDAVLGEKVLEEALLSREHVLEL R A R E K V 3 1 0 1 0 0 3 5 0 0 1 1 0 0 0 0 2 0 0 1 0 0 18 1 1716.8279 I3L0W0;Q92667 I3L0W0 10 27 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 3 0.00084627 32.55 By MS/MS 1 1.1362 1.178 NaN 1 Median 1.1362 1.178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2033600 894140 1139500 2033600 894140 1139500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2862 1275 2987 14894 15280 15280 1 AREVLLASQK HPMMITNAERLRRKRAREVLLASQKTDAEA LRRKRAREVLLASQKTDAEATDTEATET__ R A R Q K T 2 1 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1113.6506 Q9Y3D3 Q9Y3D3 115 124 MRPS16 28S ribosomal protein S16, mitochondrial yes yes 2 0.017861 55.549 By matching By MS/MS By matching 2 1 1 0.82393 0.73577 23.596 4 Median 0.73385 0.72631 19.794 2 0 Median 1.1798 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79682 0.64799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4630000 2245800 2384200 1746000 952810 793140 2807400 1252300 1555000 0 0 0 76706 40683 36023 0 0 0 0 0 0 2863 4422 2988 14895;14896;14897;14898 15281 15281 1 ARFEELCSDLFR DSLFEGIDFYTSITRARFEELCSDLFRSTL ITRARFEELCSDLFRSTLEPVEKALRDAKL R A R F R S 1 2 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 12 1 1541.7297 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;P48741 A0A0G2JIW1 301 312 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2;3 0.00017598 140.3 By MS/MS By MS/MS By matching By MS/MS 2 3 1 3 1.4184 1.4795 21.524 9 Median 1.5589 1.5359 5.29 2 0 Median 1.2661 1.1505 13.469 3 0 Plateau 1.5691 1.751 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4184 1.5282 9.1915 3 0 Median NaN NaN NaN 0 0 Median 110090000 45101000 64990000 34014000 12847000 21167000 55653000 23642000 32011000 3436400 1345500 2090900 0 0 0 16988000 7267300 9720800 0 0 0 2864 278;2035 2989 14899;14900;14901;14902;14903;14904;14905;14906;14907 15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292 15283 11 ARFEELNADLFR DSLYEGIDFYTSITRARFEELNADLFRGTL ITRARFEELNADLFRGTLDPVEKALRDAKL R A R F R G 2 2 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 12 1 1479.747 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2;P54652 P11142 300 311 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2;3 7.3858E-41 227.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 7 6 7 3 1.1349 1.1368 16.028 36 Median 1.2012 1.229 15.113 7 0 Median 1.0759 0.97373 11.163 6 0 Median 1.0661 1.1596 8.3764 7 0 Median 1.2597 1.1737 14.364 6 0 Median 1.1144 1.2108 21.251 7 0 Median 1.2683 1.1213 9.7372 3 0 Plateau 1082900000 484280000 598620000 562180000 245520000 316650000 262730000 122180000 140550000 145170000 65679000 79491000 11500000 5003700 6496400 97258000 44263000 52995000 4058600 1625600 2433000 2865 1950;2483 2990 14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939;14940;14941;14942;14943 15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303;15304;15305;15306;15307;15308;15309;15310;15311;15312;15313;15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331 15320 39 ARGDSEALDEES PDLDRPGSDRQERERARGDSEALDEES___ RERARGDSEALDEES_______________ R A R E S - 2 1 0 2 0 0 3 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 1 1277.5372 Q7Z4V5;A0A087WZ99 Q7Z4V5 660 671 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 0.0031725 62.303 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1 0.98174 0.92168 16.375 8 Median 0.7657 0.75509 7.848 2 0 Median 0.91693 0.77565 NaN 1 0 Median 0.9388 0.9974 NaN 1 0 Median 1.0911 0.92168 9.8384 2 0 Median 1.1206 1.1582 NaN 1 0 Median 1.1685 1.0079 NaN 1 0 Median 27341000 13406000 13935000 3702200 1969900 1732300 4389200 2254500 2134700 9202500 4547500 4654900 2585400 1202200 1383200 6843500 3119800 3723700 618330 312220 306110 2866 3248 2991 14944;14945;14946;14947;14948;14949;14950;14951 15332;15333;15334;15335;15336;15337;15338;15339 15332 8 ARHEVLLISAEQDKR SNQIKITGTKEGIEKARHEVLLISAEQDKR ARHEVLLISAEQDKRAVERLEVEKAFHPFI K A R K R A 2 2 0 1 0 1 2 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 15 2 1763.9642 Q00341;A0A024R4E5;H0Y394;H7C0A4;C9JIZ1 Q00341 208 222 HDLBP Vigilin yes no 3;4 1.4643E-06 86.641 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.0814 1.1162 18.184 8 Median 1.1501 1.1672 13.246 4 2 Median 1.0128 1.0985 1.149 2 0 Median 1.4426 1.6263 NaN 1 0 Median 0.91526 0.9168 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63347000 29333000 34014000 35414000 15428000 19987000 14491000 7666800 6824500 10118000 4342800 5775200 3322900 1895300 1427600 0 0 0 0 0 0 2867 4 2992 14952;14953;14954;14955;14956;14957;14958;14959 15340;15341;15342;15343;15344;15345;15346;15347;15348;15349;15350;15351;15352 15343 13 ARHPQLLYESK ITNGEEVAVKLESQKARHPQLLYESKLYKI ESQKARHPQLLYESKLYKILQGGVGIPHIR K A R S K L 1 1 0 0 0 1 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 11 1 1340.7201 U3KPX3;A0A590UJ43;P48729;A0A590UJQ7;E5RG27;D6RGE5;A0A590UK94 U3KPX3 52 62 CSNK1A1 Casein kinase I isoform alpha yes no 3 0.025082 24.108 By MS/MS 1 1.0029 0.88273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0029 0.88273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 754950 338120 416830 0 0 0 0 0 0 0 0 0 754950 338120 416830 0 0 0 0 0 0 2868 481 2993 14960 15353 15353 1 ARLEIEPEWAYGK RGWDEALLTMSKGEKARLEIEPEWAYGKKG EKARLEIEPEWAYGKKGQPDAKIPPNAKLT K A R G K K 2 1 0 0 0 0 3 1 0 1 1 1 0 0 1 0 0 1 1 0 0 0 13 1 1560.7936 Q00688 Q00688 188 200 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 3.5393E-06 103.34 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.73635 0.75456 28.743 6 Median 0.56659 0.57968 42.239 2 0 Median 0.90771 0.84574 NaN 1 0 Median 0.55023 0.62914 20.759 2 0 Median 1.0212 0.90401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39207000 23051000 16156000 15535000 9717300 5817700 2927000 1472900 1454100 19117000 11086000 8030400 1628200 774390 853800 0 0 0 0 0 0 2869 2677 2994 14961;14962;14963;14964;14965;14966 15354;15355;15356;15357;15358 15356 5 ARLEIEPEWAYGKK RGWDEALLTMSKGEKARLEIEPEWAYGKKG KARLEIEPEWAYGKKGQPDAKIPPNAKLTF K A R K K G 2 1 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 1 1 0 0 0 14 2 1688.8886 Q00688 Q00688 188 201 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3 0.00038106 50.155 By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 0.73359 0.69844 13.906 5 Median 0.67157 0.70529 14.44 2 0 Median 0.73405 0.63645 NaN 1 0 Median 0.62382 0.69844 NaN 1 0 Median 1.0649 0.87835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20188000 10575000 9612900 10448000 5217300 5230400 3274600 1898300 1376200 4247900 2345500 1902400 2218300 1114300 1103900 0 0 0 0 0 0 2870 2677 2995 14967;14968;14969;14970;14971 15359;15360;15361;15362 15360 4 ARLPEELR CVISKTARLLSSEDRARLPEELRSLVQKRY LLSSEDRARLPEELRSLVQKRYELLEHKKR R A R L R S 1 2 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 1 982.55598 Q9UIG0 Q9UIG0 512 519 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.015595 88.819 By MS/MS By MS/MS 1 1 0.6472 0.64001 7.7024 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56027 0.60608 NaN 1 1 Median 0.74761 0.67583 NaN 1 0 Median 7938400 5090900 2847500 0 0 0 0 0 0 0 0 0 0 0 0 7444800 4811900 2633000 493560 279020 214530 2871 4290 2996 14972;14973 15363;15364 15363 2 ARLPPDVLR RLLPAELPAKRVRGKARLPPDVLRWVELAK KRVRGKARLPPDVLRWVELAKLYRSIGEYD K A R L R W 1 2 0 1 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 9 1 1035.6189 P78527 P78527 2914 2922 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.002359 120.15 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.66473 0.71908 8.1706 5 Median 0.60747 0.64963 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66377 0.78209 1.8172 2 0 Median NaN NaN NaN 0 0 Median 0.66473 0.71908 NaN 1 0 Median 0.78313 0.68736 NaN 1 0 Median 45282000 25683000 19599000 1595200 865940 729260 0 0 0 35922000 20560000 15362000 0 0 0 5842800 3357600 2485200 1921600 899790 1021800 2872 2647 2997 14974;14975;14976;14977;14978 15365;15366;15367 15366 3 ARLQLELSK LGDARKTLDSVAKERARLQLELSKVREEFK SVAKERARLQLELSKVREEFKELKARNTKK R A R S K V 1 1 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 1 1056.6291 P02545;Q3BDU5 P02545 100 108 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0020531 128.38 By MS/MS By MS/MS 1 1 1.3998 1.3384 9.7676 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2256 1.2491 NaN 1 0 Median 1.5987 1.4341 NaN 1 0 Median 33005000 13937000 19069000 0 0 0 0 0 0 0 0 0 0 0 0 22267000 10008000 12259000 10739000 3929100 6809700 2873 1834;3010 2998 14979;14980 15368;15369;15370 15369 3 ARPAEVGGMQLR GGAAPETPAISPSKRARPAEVGGMQLRFAR SKRARPAEVGGMQLRFARLSEHATAPTRGS R A R L R F 2 2 0 0 0 1 1 2 0 0 1 0 1 0 1 0 0 0 0 1 0 0 12 1 1283.6768 H0YNW5;H0YKC5;P33316;H0YMM5;H0YNJ9;H0YKI0 H0YNW5 19 30 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial yes no 2;3 3.5808E-05 90.689 By MS/MS By MS/MS By MS/MS 3 4 2 0.92758 0.89318 30.921 9 Median 0.85213 0.89318 1.9391 3 0 Median 0.9656 0.88336 23.722 4 0 Median 1.2411 1.2868 66.038 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158980000 81620000 77357000 93858000 50667000 43190000 49042000 23646000 25396000 16078000 7307100 8771200 0 0 0 0 0 0 0 0 0 2874 1190 2999;3000 14981;14982;14983;14984;14985;14986;14987;14988;14989 15371;15372;15373;15374;15375;15376;15377;15378;15379;15380 15372 398 10 ARPEDVISEGR DVPIYDGSWVEWYMRARPEDVISEGRGKTH WYMRARPEDVISEGRGKTH___________ R A R G R G 1 2 0 1 0 0 2 1 0 1 0 0 0 0 1 1 0 0 0 1 0 0 11 1 1227.6208 P25325 P25325 283 293 MPST 3-mercaptopyruvate sulfurtransferase yes yes 2;3 0.00014267 89.171 By matching By MS/MS 1 2 0.93981 0.86505 28.2 3 Median 0.66909 0.72031 NaN 1 0 Median 1.131 1.0411 26.194 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9602600 5727300 3875400 1356900 872590 484300 8245700 4854700 3391100 0 0 0 0 0 0 0 0 0 0 0 0 2875 2131 3001 14990;14991;14992 15381;15382 15382 1 ARPEDVVNLDLK FAFELMLDGGLKKPKARPEDVVNLDLKSTL KPKARPEDVVNLDLKSTLRVLYNLFTKYKN K A R L K S 1 1 1 2 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 12 1 1367.7409 Q9HBI1;A0A087WZB5 Q9HBI1 336 347 PARVB Beta-parvin yes no 3 0.01256 26.541 By MS/MS By matching 1 1 1.0875 1.0918 3.9123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9888 1.1224 NaN 1 0 Median 1.1961 1.062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3422600 1731000 1691600 0 0 0 0 0 0 3265000 1644100 1620800 157630 86877 70749 0 0 0 0 0 0 2876 4019 3002 14993;14994 15383 15383 1 ARPELEELLAK SVKEHTEEDFKGRFKARPELEELLAKLK__ GRFKARPELEELLAKLK_____________ K A R A K L 2 1 0 0 0 0 3 0 0 0 3 1 0 0 1 0 0 0 0 0 0 0 11 1 1267.7136 F5H702;Q96GC5;F5H8D0 F5H702 101 111 MRPL48 39S ribosomal protein L48, mitochondrial yes no 2;3 0.00057602 57.019 By MS/MS By MS/MS 3 1 0.90588 0.85204 7.7848 4 Median 0.82769 0.8169 9.2068 3 0 Median 1.007 0.88869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24073000 11974000 12099000 18045000 9024900 9020500 6027100 2948900 3078200 0 0 0 0 0 0 0 0 0 0 0 0 2877 1044 3003 14995;14996;14997;14998 15384;15385;15386;15387 15385 4 ARPEYMLPVHFYGR EEADDWLRYGNPWEKARPEYMLPVHFYGRV KARPEYMLPVHFYGRVEHTPDGVKWLDTQV K A R G R V 1 2 0 0 0 0 1 1 1 0 1 0 1 1 2 0 0 0 2 1 0 0 14 1 1734.8664 P11216 P11216 193 206 PYGB Glycogen phosphorylase, brain form yes yes 3 0.00052153 47.532 By MS/MS By matching By matching 2 1 1 0.81352 0.91532 22.845 4 Median 1.0384 1.1083 29.402 2 0 Median 0.81678 0.80811 NaN 1 0 Median 0.80543 0.93066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11631000 6083000 5548500 8317700 4527600 3790100 703780 416470 287310 2609900 1138900 1471000 0 0 0 0 0 0 0 0 0 2878 1956 3004 14999;15000;15001;15002 15388 15388 1 ARPFPDGLAEDIDKGEVSAR CLSKSPNKHNRLYMKARPFPDGLAEDIDKG DGLAEDIDKGEVSARQELKQRARYLAEKYE K A R A R Q 3 2 0 3 0 0 2 2 0 1 1 1 0 1 2 1 0 0 0 1 0 0 20 2 2142.0705 P13639 P13639 606 625 EEF2 Elongation factor 2 yes yes 3;4 1.1688E-21 161.08 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.6711 0.81155 29.772 9 Median 0.88567 0.92315 20.704 4 1 Median 0.63123 0.76848 7.713 2 0 Median 0.78639 0.92528 36.688 2 1 Median 0.43382 0.44164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108030000 55458000 52574000 48329000 21787000 26542000 32644000 19367000 13278000 25640000 13329000 12311000 1419200 976180 442990 0 0 0 0 0 0 2879 1992 3005 15003;15004;15005;15006;15007;15008;15009;15010;15011 15389;15390;15391;15392;15393;15394;15395;15396;15397;15398;15399;15400;15401;15402;15403;15404;15405;15406;15407;15408 15390 20 ARPNTVISQEPFVPK LEEELRQQKEAACFKARPNTVISQEPFVPK ARPNTVISQEPFVPKKEKKSVAEGLSGSLV K A R P K K 1 1 1 0 0 1 1 0 0 1 0 1 0 1 3 1 1 0 0 2 0 0 15 1 1681.9152 Q9ULW0 Q9ULW0 627 641 TPX2 Targeting protein for Xklp2 yes yes 2;3 0.0001173 75.78 By MS/MS By matching By matching 3 1 1 0.7406 0.83924 65.7 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7406 0.83924 60.124 3 0 Plateau 1.6049 1.54 NaN 1 0 Median 1.2469 1.3713 NaN 1 0 Median NaN NaN NaN 0 0 Median 31243000 15282000 15960000 0 0 0 0 0 0 22530000 12129000 10402000 3870200 1087400 2782800 4842200 2066100 2776100 0 0 0 2880 4330 3006 15012;15013;15014;15015;15016 15409;15410;15411;15412 15411 4 ARPQLILSR LKRGSCRSTWLRVRKARPQLILSRRPRRRL WLRVRKARPQLILSRRPRRRLGSLRWCGRR K A R S R R 1 2 0 0 0 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 1 1052.6455 Q5SY16 Q5SY16 23 31 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.0090703 76.221 By MS/MS By matching 2 1 1.1182 0.99081 35.932 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.203 1.3323 44.695 2 0 Median 1.1182 0.99081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6183600 2986400 3197200 0 0 0 0 0 0 5017800 2448600 2569300 1165800 537790 627970 0 0 0 0 0 0 2881 3077 3007 15017;15018;15019 15413 15413 1 ARPSQFPEQSSSAQQNAR NDPPSRDNRVVGSARARPSQFPEQSSSAQQ SQFPEQSSSAQQNARRKSNCVKEVEKLQEK R A R A R R 3 2 1 0 0 4 1 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 18 1 1987.946 D6R9M0 D6R9M0 118 135 KIF2A yes yes 3 3.8792E-05 47.09 By matching By MS/MS By MS/MS 1 1 1 0.9212 0.81627 13.54 3 Plateau 0.8128 0.89524 NaN 1 0 Median 0.69307 0.6857 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9212 0.81627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631000 1649800 981230 872310 641340 230970 784190 440570 343610 0 0 0 974510 567880 406640 0 0 0 0 0 0 2882 804 3008 15020;15021;15022 15414;15415;15416 15416 3 ARQEELYSELQAR LTGLSLLPLSEKAARARQEELYSELQARET ARARQEELYSELQARETFEKTPVEVPVGGF R A R A R E 2 2 0 0 0 2 3 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 13 1 1591.7954 Q15149;H0YDN1 Q15149 3356 3368 PLEC Plectin yes no 2;3 5.2632E-07 153.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 3 1.2325 1.3256 41.733 12 Median 1.1911 1.2943 68.728 3 0 Median 1.2159 1.1396 16.051 3 0 Median 1.0492 1.1531 3.1361 2 0 Median 1.473 1.3727 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8151 1.5964 31.547 3 0 Median 169830000 74694000 95139000 67118000 29291000 37827000 48182000 21073000 27109000 42775000 20209000 22566000 4560600 1880200 2680400 0 0 0 7197300 2241400 4955900 2883 2933 3009 15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034 15417;15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431;15432 15422 16 ARQEFEERMEEESQSQGR GDMDELEKEMLSVEKARQEFEERMEEESQS EFEERMEEESQSQGRDLTLEENQVKKYHRL K A R G R D 1 3 0 0 0 3 6 1 0 0 0 0 1 1 0 2 0 0 0 0 0 0 18 2 2224.9767 Q14683;G8JLG1 Q14683 346 363 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3;4 2.1577E-11 99.891 By MS/MS By matching 2 1 0.77424 0.88346 15.846 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75038 0.85624 4.4263 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0908 1.1206 NaN 1 0 Median 21658000 12785000 8872800 0 0 0 0 0 0 21042000 12516000 8525900 0 0 0 0 0 0 616160 269250 346910 2884 2889 3010 15035;15036;15037 15433;15434;15435 15433 3 ARQNHLFEQYR YCMNITDIDDKIIKRARQNHLFEQYREKRP IIKRARQNHLFEQYREKRPEAAQLLEDVQA R A R Y R E 1 2 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 11 1 1460.7273 P49589;B4DKY1 P49589 106 116 CARS Cysteine--tRNA ligase, cytoplasmic yes no 3 0.026484 23.749 By MS/MS 1 0.50224 0.51494 NaN 1 Median 0.50224 0.51494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1634200 1153800 480380 1634200 1153800 480380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2885 2386 3011 15038 15436 15436 1 ARSEQFINLR AVHLKRDFFLANASRARSEQFINLREVSTR ANASRARSEQFINLREVSTRFRLPPGEYVV R A R L R E 1 2 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 10 1 1232.6626 P07384 P07384 472 481 CAPN1 Calpain-1 catalytic subunit yes yes 3 0.00044059 66.056 By MS/MS 1 0.92933 0.95284 NaN 1 Median 0.92933 0.95284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4445500 2120100 2325400 4445500 2120100 2325400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2886 1886 3012 15039 15437 15437 1 ARVDPTVENEETFMNR GGSTSETPQPPRKKRARVDPTVENEETFMN RVDPTVENEETFMNRVEVKVKIPEELKPWL R A R N R V 1 2 2 1 0 0 3 0 0 0 0 0 1 1 1 0 2 0 0 2 0 0 16 1 1906.8843 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21;H0YMT8;H0YLV1;H0YNE0;H0YNX3 B3KTM8 163 178 MORF4L1 Mortality factor 4-like protein 1 yes no 3 0.00032808 39.143 By MS/MS 1 0.84532 0.74412 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84532 0.74412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3600700 1806900 1793800 0 0 0 0 0 0 0 0 0 3600700 1806900 1793800 0 0 0 0 0 0 2887 585 3013 15040 15438 15438 1 ARVEENFLK FRLNREGKQKADKNRARVEENFLKLTHVQR KADKNRARVEENFLKLTHVQRQEAAQSRRE R A R L K L 1 1 1 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 1 1104.5928 Q96A33;A0A087WYW6;J3QR89 Q96A33 411 419 CCDC47 Coiled-coil domain-containing protein 47 yes no 2 0.023234 59.245 By MS/MS 2 0.84319 0.81971 19.472 2 Median 0.84319 0.81971 19.472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9676700 4513000 5163700 9676700 4513000 5163700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2888 3592 3014 15041;15042 15439 15439 1 ARYEAANWK VMTGMTADSRSQVQRARYEAANWKYKYGYE RSQVQRARYEAANWKYKYGYEIPVDMLCKR R A R W K Y 3 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 9 1 1107.5461 G3V5Z7;P60900;G3V295;G3V3I1 G3V5Z7 94 102 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 0.031384 53.968 By MS/MS By matching 1 1 1.1975 1.1882 7.2585 2 Median 1.0724 1.1288 NaN 1 0 Median 1.3372 1.2508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4481700 1888700 2592900 2845100 1208200 1637000 1636500 680560 955960 0 0 0 0 0 0 0 0 0 0 0 0 2889 1122 3015 15043;15044 15440 15440 1 ASAAFSSVGSVITK AYKKTSETLSQAGQKASAAFSSVGSVITKK KASAAFSSVGSVITKKLEDVKNSPTFKSFE K A S T K K 3 0 0 0 0 0 0 1 0 1 0 1 0 1 0 4 1 0 0 2 0 0 14 0 1323.7034 H0YC42;P55327 H0YC42 150 163 TPD52 Tumor protein D52 no no 2 0.0003639 72.29 By MS/MS By MS/MS By matching 2 1 1 1.1224 1.0657 4.4669 4 Median 1.1224 1.0657 2.5831 2 0 Median 1.3115 1.1035 NaN 1 0 Median 1.0566 0.99772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119730000 55337000 64388000 110290000 51100000 59193000 4247400 1829300 2418100 5185600 2408300 2777300 0 0 0 0 0 0 0 0 0 2890 1172;2499 3016 15045;15046;15047;15048 15441;15442 15441 2 ASAALLDKLYALGLVPTR RRLRDLPERDQFRVRASAALLDKLYALGLV ALLDKLYALGLVPTRGSLELCDFVTASSFC R A S T R G 4 1 0 1 0 0 0 1 0 0 5 1 0 0 1 1 1 0 1 1 0 0 18 1 1871.088 Q9NV31 Q9NV31 75 92 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2;3 3.3153E-12 110.07 By MS/MS By matching 2 1 1.0164 1.1496 80.123 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97172 1.098 6.4928 2 0 Median 5.4894 4.3886 NaN 1 0 Median 38504000 17475000 21029000 0 0 0 0 0 0 0 0 0 0 0 0 32842000 14692000 18149000 5662100 2782100 2880000 2891 4122 3017 15049;15050;15051 15443;15444;15445;15446;15447 15446 5 ASAAPKPEPVPVQK KIKGCTGSLNMTLQRASAAPKPEPVPVQKG RASAAPKPEPVPVQKGEPKEVVKPVPITSP R A S Q K G 3 0 0 0 0 1 1 0 0 0 0 2 0 0 4 1 0 0 0 2 0 0 14 1 1417.7929 Q96HC4;A0A0D9SFR4;H0YBI4;H0Y929 Q96HC4 84 97 PDLIM5 PDZ and LIM domain protein 5 yes no 3 0.03637 18.336 By MS/MS 1 0.67641 0.59394 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67641 0.59394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 589130 316980 272150 0 0 0 0 0 0 0 0 0 589130 316980 272150 0 0 0 0 0 0 2892 3665 3018 15052 15448 15448 1 ASAEGPLLGPEAAPSGEGAGSK KVPEVTEKKNKKLKKASAEGPLLGPEAAPS LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL K A S S K G 5 0 0 0 0 0 3 5 0 0 2 1 0 0 3 3 0 0 0 0 0 0 22 0 1951.9487 C9JQV0;Q9BRJ6 C9JQV0 22 43 C7orf50 Uncharacterized protein C7orf50 yes no 2 1.0983E-08 51.546 By matching By matching By MS/MS 1 1 1 0.66485 0.60173 2.2703 2 Median NaN NaN NaN 0 0 Median 0.69405 0.59214 NaN 1 0 Median 0.63687 0.61146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8118700 4789500 3329200 4375600 2816400 1559200 1282000 691520 590490 2461100 1281600 1179500 0 0 0 0 0 0 0 0 0 2893 718 3019 15053;15054;15055 15449;15450 15450 2 ASAELALGENSEVLK DKEYLPIGGLAEFCKASAELALGENSEVLK ASAELALGENSEVLKSGRFVTVQTISGTGA K A S L K S 3 0 1 0 0 0 3 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 15 0 1529.7937 P00505 P00505 108 122 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 3.2374E-11 118.77 By MS/MS By matching 4 3 1.0183 0.93999 28.888 6 Median 1.0671 0.97719 19.067 3 1 Plateau 1.398 1.1941 36.967 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106660000 48468000 58193000 96975000 44623000 52352000 9686300 3845600 5840700 0 0 0 0 0 0 0 0 0 0 0 0 2894 1823 3020 15056;15057;15058;15059;15060;15061;15062 15451;15452;15453;15454;15455 15451 5 ASAELIEEEVAK VKLQGERVRGLKQQKASAELIEEEVAKLLK QQKASAELIEEEVAKLLKLKAQLGPDESKQ K A S A K L 3 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1287.6558 P12081;B4DDD8;B4E1C5;E7ETE2;D6RF05;A0A2R8YCI2;A0A2R8YFR1 P12081 26 37 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0002038 128.35 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.88559 0.73992 22.068 6 Median 0.97656 0.95244 NaN 1 0 Median 0.83092 0.71538 9.6057 2 0 Median 0.90474 0.87381 38.822 2 0 Median 0.86685 0.71505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69238000 33535000 35703000 1191900 524520 667340 20438000 9713500 10725000 46913000 22879000 24034000 694790 418210 276570 0 0 0 0 0 0 2895 1975 3021 15063;15064;15065;15066;15067;15068 15456;15457;15458 15456 3 ASAFALQEQPVVNAVIDDTTK KKHNLKLGFMSAFVKASAFALQEQPVVNAV QEQPVVNAVIDDTTKEVVYRDYIDISVAVA K A S T K E 4 0 1 2 0 2 1 0 0 1 1 1 0 1 1 1 2 0 0 3 0 0 21 0 2216.1325 P36957 P36957 287 307 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 3 0.05944 7.5332 By matching By MS/MS 1 1 0.95275 0.95685 8.4797 2 Median 1.0306 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88076 0.90116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2031100 1030400 1000700 681710 305330 376380 0 0 0 1349400 725120 624320 0 0 0 0 0 0 0 0 0 2896 2265 3022 15069;15070 15459 15459 1 ASAGHVAVSSPTPETGPLQR NPAMSPAVSQPCTPRASAGHVAVSSPTPET VAVSSPTPETGPLQRLLPKARPMSLSTIAI R A S Q R L 3 1 0 0 0 1 1 2 1 0 1 0 0 0 3 3 2 0 0 2 0 0 20 0 1960.9967 P42695 P42695 1320 1339 NCAPD3 Condensin-2 complex subunit D3 yes yes 3 2.4581E-09 82.865 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.61776 0.56177 13.984 4 Median 0.62771 0.58981 NaN 1 0 Median 0.59863 0.5111 NaN 1 0 Median 0.63732 0.70098 NaN 1 0 Median 0.60797 0.53507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24526000 15098000 9428300 9657900 6469900 3188000 4201000 2563400 1637500 6121800 3326200 2795600 4545400 2738200 1807200 0 0 0 0 0 0 2897 2313 3023 15071;15072;15073;15074 15460;15461;15462;15463;15464;15465;15466 15466 7 ASAGPQPLLVQSCK TQTIAAAQHAASTPKASAGPQPLLVQSCKA KASAGPQPLLVQSCKAVAEQIPLLVQGVRG K A S C K A 2 0 0 0 1 2 0 1 0 0 2 1 0 0 2 2 0 0 0 1 0 0 14 0 1454.7551 Q9Y490 Q9Y490 944 957 TLN1 Talin-1 yes yes 2 0.0012025 49.934 By MS/MS 2 0.77754 0.68095 13.446 2 Median NaN NaN NaN 0 0 Median 0.77754 0.68095 13.446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7839000 4944600 2894400 0 0 0 7839000 4944600 2894400 0 0 0 0 0 0 0 0 0 0 0 0 2898 4441 3024 15075;15076 15467 15467 1 ASALEQFVNSVR ______________________________ ______________________________ M A S V R Q 2 1 1 0 0 1 1 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 12 0 1319.6834 Q9UNS2;C9JLV5;J3QKR0;J3QL22;J3QS85;J3KTQ1 Q9UNS2 2 13 COPS3 COP9 signalosome complex subunit 3 yes no 2 5.74E-05 94.692 By MS/MS By matching By MS/MS By MS/MS By matching 5 1 3 1 1 1.1891 1.1102 14.69 11 Median 1.1127 1.1135 15.091 5 0 Median 1.1235 0.9692 NaN 1 0 Median 1.2681 1.3518 18.743 3 0 Median 1.2873 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1891 1.0515 NaN 1 0 Median 52103000 23177000 28926000 28284000 13010000 15275000 2858400 1299200 1559200 20375000 8602400 11772000 508930 231480 277450 0 0 0 76872 33873 42999 2899 4350 3025 15077;15078;15079;15080;15081;15082;15083;15084;15085;15086;15087 15468;15469;15470;15471;15472;15473 15471 6 ASALGLGDGEEEAPPSR RHRFISHKKRRGVGKASALGLGDGEEEAPP ALGLGDGEEEAPPSRSDPDGGDSPLPASGG K A S S R S 3 1 0 1 0 0 3 3 0 0 2 0 0 0 2 2 0 0 0 0 0 0 17 0 1654.7798 Q8N1G0 Q8N1G0 1167 1183 ZNF687 Zinc finger protein 687 yes yes 2 0.01191 42.556 By MS/MS 1 3.8105 3.349 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.8105 3.349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2951700 603280 2348500 0 0 0 0 0 0 0 0 0 2951700 603280 2348500 0 0 0 0 0 0 2900 3357 3026 15088 15474 15474 1 ASALIDRPAPYFER SKFRYSGRTQAQTRRASALIDRPAPYFERS RASALIDRPAPYFERSSSKRYTMSRSLDGA R A S E R S 3 2 0 1 0 0 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 0 14 1 1604.8311 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A1B0GTF8;J3KT37 A0A0A0MRA8 419 432 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 0.00026694 58.752 By MS/MS By matching 1 1 0.82686 0.93686 4.0788 2 Median 0.81927 0.91023 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83452 0.96427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8512200 4558600 3953600 6264500 3334500 2930000 0 0 0 2247700 1224100 1023600 0 0 0 0 0 0 0 0 0 2901 156 3027 15089;15090 15475;15476 15475 2 ASANMDLMR VGKGITFDSGGISIKASANMDLMRADMGGA GGISIKASANMDLMRADMGGAATICSAIVS K A S M R A 2 1 1 1 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 9 0 1007.4528 P28838;H0Y9Q1 P28838 295 303 LAP3 Cytosol aminopeptidase yes no 2 0.0030333 85.161 By MS/MS By MS/MS 1 1 1.1694 1.0653 10.785 2 Median 1.1745 1.1497 NaN 1 0 Median 1.1643 0.98706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10415000 4498700 5916500 5387600 2371200 3016400 5027600 2127500 2900100 0 0 0 0 0 0 0 0 0 0 0 0 2902 2167 3028 15091;15092 15477;15478 15478 1 ASASGSGAQVGGPISSGSSASSVTVTR SRTVLCGTCGQPADKASASGSGAQVGGPIS PISSGSSASSVTVTRSYRSVGGSGGGSFGD K A S T R S 4 1 0 0 0 1 0 5 0 1 0 0 0 0 1 9 2 0 0 3 0 0 27 0 2364.1517 P02545;A0A0C4DGC5 P02545 598 624 LMNA Prelamin-A/C;Lamin-A/C yes no 2;3 1.5053E-89 219.01 By MS/MS By MS/MS By MS/MS By MS/MS 2 6 6 6 0.84041 0.73942 9.4375 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79689 0.80256 8.9165 2 0 Median 0.89549 0.75264 8.7201 6 0 Median 0.73171 0.7562 7.3336 6 0 Median 0.87788 0.6959 8.1914 6 0 Median 214030000 115780000 98242000 0 0 0 0 0 0 83284000 45533000 37752000 24854000 12820000 12034000 86690000 47123000 39567000 19197000 10308000 8889400 2903 1834 3029 15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104;15105;15106;15107;15108;15109;15110;15111;15112 15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504;15505;15506;15507 15486 29 ASASTQPAALSAEQAK ______________________________ SASTQPAALSAEQAKVVLAEVIQAFSAPEN M A S A K V 6 0 0 0 0 2 1 0 0 0 1 1 0 0 1 3 1 0 0 0 0 0 16 0 1529.7686 F5GXW5;U3KQ07;Q99622 F5GXW5 2 17 C12orf57 Protein C10 yes no 2 2.4248E-08 130.01 By MS/MS By MS/MS By matching 1 1 1 0.88888 0.75466 15.2 3 Median 0.72365 0.65786 NaN 1 0 Median 0.91438 0.75466 NaN 1 0 Median 0.88888 0.89117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20515000 10806000 9709200 13164000 7100800 6063300 5750000 2883400 2866600 1601100 821830 779240 0 0 0 0 0 0 0 0 0 2904 1009 3030 15113;15114;15115 15508;15509;15510 15510 3 ASASYHISNLLEK ______________________________ ______________________________ M A S E K M 2 0 1 0 0 0 1 0 1 1 2 1 0 0 0 3 0 0 1 0 0 0 13 0 1431.7358 Q86VP6 Q86VP6 2 14 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 1.6616E-22 201.46 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 3 1 1.2017 1.1104 32.103 9 Median 1.0382 0.97189 2.169 2 0 Median 1.2787 1.0775 8.8665 2 0 Median 1.0485 1.1104 NaN 1 0 Median 1.1986 1.0449 NaN 1 0 Median 2.0473 2.093 25.127 2 0 Median 1.3669 1.1475 NaN 1 0 Median 284200000 130620000 153590000 99926000 47153000 52773000 26778000 12212000 14566000 133700000 62843000 70858000 8291800 3789600 4502200 14653000 4236200 10417000 855110 382510 472600 2905 3288 3031 15116;15117;15118;15119;15120;15121;15122;15123;15124;15125 15511;15512;15513;15514;15515;15516;15517;15518;15519;15520 15511 10 ASATIIEPAGESDNPLR QSAFLHLPLPEQIHKASATIIEPAGESDNP ATIIEPAGESDNPLRFTSGLVVALDVDATL K A S L R F 3 1 1 1 0 0 2 1 0 2 1 0 0 0 2 2 1 0 0 0 0 0 17 0 1739.869 Q96HW7 Q96HW7 820 836 INTS4 Integrator complex subunit 4 yes yes 2 1.7895E-05 77.593 By MS/MS By matching 1 1 0.66646 0.63854 0.57786 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60121 0.64116 NaN 1 0 Median 0.73879 0.63594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6143100 3738500 2404600 0 0 0 0 0 0 5620200 3471900 2148300 522970 266620 256340 0 0 0 0 0 0 2906 3671 3032 15126;15127 15521;15522 15522 2 ASAVSELSPR KPWPDATYGTGSASRASAVSELSPRERSPA GSASRASAVSELSPRERSPALKSPLQSVVV R A S P R E 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1015.5298 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 236 245 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0041597 62.823 By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 0.93345 0.83149 26.156 6 Median NaN NaN NaN 0 0 Median 0.75893 0.64275 42.226 2 0 Median 0.91651 0.88033 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95071 0.98901 NaN 1 0 Median 0.90298 0.73365 11.89 2 0 Median 35312000 19651000 15661000 0 0 0 6677600 4022900 2654700 19755000 10144000 9611300 0 0 0 6205200 4236500 1968700 2674100 1247600 1426500 2907 439 3033 15128;15129;15130;15131;15132;15133;15134;15135 15523;15524;15525;15526;15527;15528 15528 6 ASAVSPANLPAVLLQPR ______________________________ AVSPANLPAVLLQPRWKRVVGWSGPVPRPR M A S P R W 4 1 1 0 0 1 0 0 0 0 3 0 0 0 3 2 0 0 0 2 0 0 17 0 1702.973 A6NEM2;P51610 A6NEM2 2 18 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 2.5464E-24 189.13 By MS/MS By MS/MS By MS/MS By matching By matching 1 6 2 2 2 0.70698 0.61455 22.229 13 Median 0.88356 0.88784 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.58991 0.59609 26.71 6 0 Median 0.7952 0.69139 15.114 2 0 Median 0.5319 0.52677 3.9418 2 0 Median 0.80022 0.64848 7.6014 2 0 Median 25807000 15697000 10110000 1379100 757030 622070 0 0 0 22767000 13977000 8789400 855090 484470 370620 659790 388850 270940 146520 89857 56663 2908 509;2438 3034 15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146;15147;15148 15529;15530;15531;15532;15533;15534;15535 15531 7 ASAVYQALQK QDVAGVFALSSFLNKASAVYQALQKSNGVL SFLNKASAVYQALQKSNGVLPELFQCHGTA K A S Q K S 3 0 0 0 0 2 0 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1077.5819 Q5VWZ2 Q5VWZ2 154 163 LYPLAL1 Lysophospholipase-like protein 1 yes yes 2 0.018247 53.833 By MS/MS 1 1.0029 0.93412 NaN 1 Median 1.0029 0.93412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4541400 2052200 2489200 4541400 2052200 2489200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2909 3115 3035 15149 15536 15536 1 ASAYEALEK ALALVPFSIKPLLRRASAYEALEKYPMAYV KPLLRRASAYEALEKYPMAYVDYKTVLQID R A S E K Y 3 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 980.48148 Q15785 Q15785 92 100 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.00078529 98.033 By MS/MS 1 1.2916 1.0873 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2916 1.0873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3807400 1693500 2113900 0 0 0 0 0 0 0 0 0 3807400 1693500 2113900 0 0 0 0 0 0 2910 2971 3036 15150 15537 15537 1 ASCLYGQLPK EEVVTVETWQEGSLKASCLYGQLPKFQDGD EGSLKASCLYGQLPKFQDGDLTLYQSNTIL K A S P K F 1 0 0 0 1 1 0 1 0 0 2 1 0 0 1 1 0 0 1 0 0 0 10 0 1135.5696 P09211;A8MX94;A0A087X2E9 P09211 46 55 GSTP1 Glutathione S-transferase P yes no 2 0.0015788 64.265 By MS/MS 4 1.0696 0.88149 13.352 4 Median NaN NaN NaN 0 0 Median 1.0696 0.88149 13.352 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73469000 35878000 37591000 0 0 0 73469000 35878000 37591000 0 0 0 0 0 0 0 0 0 0 0 0 2911 1912 3037 15151;15152;15153;15154 15538;15539;15540;15541;15542;15543 15541 6 ASDAFHFFQSGQAK DVLNIFPVVKHVNPKASDAFHFFQSGQAKV KASDAFHFFQSGQAKVQQGFLKEGCELINE K A S A K V 3 0 0 1 0 2 0 1 1 0 0 1 0 3 0 2 0 0 0 0 0 0 14 0 1539.7106 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 975 988 CLUH Clustered mitochondria protein homolog yes no 3 0.026898 19.694 By MS/MS By matching 1 1 1.3382 1.214 19.275 2 Median 1.4468 1.3913 NaN 1 0 Median 1.2377 1.0593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5513700 2367000 3146800 4395900 1853500 2542400 1117800 513460 604380 0 0 0 0 0 0 0 0 0 0 0 0 2912 1651 3038 15155;15156 15544 15544 1 ASDEVPLAPR CFPLVKACVFGNEPKASDEVPLAPRTEAAE GNEPKASDEVPLAPRTEAAETTPMWQALKL K A S P R T 2 1 0 1 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1053.5455 Q8TB61 Q8TB61 88 97 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.00079119 82.563 By MS/MS 2 0.78233 0.62629 NaN 1 Median NaN NaN NaN 0 0 Median 0.78233 0.62629 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17977000 10833000 7143400 0 0 0 17977000 10833000 7143400 0 0 0 0 0 0 0 0 0 0 0 0 2913 3458 3039 15157;15158 15545;15546 15546 2 ASDSAEAIEAFQLTPQQQHLIR PISDDDCPSASKVYKASDSAEAIEAFQLTP IEAFQLTPQQQHLIREDCQNQKLWDEVLSH K A S I R E 4 1 0 1 0 4 2 0 1 2 2 0 0 1 1 2 1 0 0 0 0 0 22 0 2452.2347 Q96PU4 Q96PU4 680 701 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 3 0.00019786 28.813 By MS/MS By matching 1 1 0.70051 0.66324 15.715 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69343 0.7412 NaN 1 0 Median 0.70766 0.59349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4778200 2955900 1822300 0 0 0 0 0 0 4515500 2827000 1688500 262740 128910 133820 0 0 0 0 0 0 2914 3713 3040 15159;15160 15547 15547 1 ASDVVLGFAELEGYLQK GCTITALEVKDRQGRASDVVLGFAELEGYL DVVLGFAELEGYLQKQPYFGAVIGRVANRI R A S Q K Q 2 0 0 1 0 1 2 2 0 0 3 1 0 1 0 1 0 0 1 2 0 0 17 0 1837.9462 Q96C23;H7C320 Q96C23 52 68 GALM Aldose 1-epimerase yes no 2 2.841E-05 55.452 By MS/MS By matching 1 1 0.88483 0.85898 10.223 2 Median NaN NaN NaN 0 0 Median 1.0713 0.92337 NaN 1 0 Median 0.73084 0.79908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3260100 1587300 1672900 0 0 0 2832700 1352200 1480500 427390 235060 192330 0 0 0 0 0 0 0 0 0 2915 3614 3041 15161;15162 15548 15548 1 ASEAGEVPFNHEILR KMLHSRVKLILEYVKASEAGEVPFNHEILR ASEAGEVPFNHEILREAYALCHCLPVLSTD K A S L R E 2 1 1 0 0 0 3 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 15 0 1667.8267 Q7L5N1;E7EM64 Q7L5N1 244 258 COPS6 COP9 signalosome complex subunit 6 yes no 2;3 9.7374E-05 58.676 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.0687 0.97 3.6581 6 Median 0.99704 0.93074 NaN 1 0 Median 1.1674 0.97798 NaN 1 0 Median 0.97312 0.9544 4.6512 2 0 Median 1.1464 0.98934 3.9518 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34999000 16288000 18711000 7681900 3749000 3932900 2926600 1454100 1472500 22076000 10090000 11986000 2314900 994990 1319900 0 0 0 0 0 0 2916 855 3042 15163;15164;15165;15166;15167;15168 15549;15550;15551;15552;15553;15554;15555;15556;15557 15552 9 ASEAKEGEEAGPGDPLLEAVPK MQRCIDSGLWVPNSKASEAKEGEEAGPGDP EEAGPGDPLLEAVPKTGDEKDVSV______ K A S P K T 4 0 0 1 0 0 5 3 0 0 2 2 0 0 3 1 0 0 0 1 0 0 22 1 2193.0801 Q16543;K7EL68 Q16543 348 369 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 3 0.057352 9.3288 By MS/MS 1 0.59846 0.5723 NaN 1 Median 0.59846 0.5723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9628400 5729100 3899400 9628400 5729100 3899400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2917 2988 3043 15169 15558 15558 1 ASEDLKTHMVVANTMEDFQK LQAILEDIQVTLFTRASEDLKTHMVVANTM KTHMVVANTMEDFQKILDSGKIVQIPFCGE R A S Q K I 2 0 1 2 0 1 2 0 1 0 1 2 2 1 0 1 2 0 0 2 0 0 20 1 2293.0719 P07814 P07814 1416 1435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3;4 4.0798E-09 81.316 By MS/MS 3 1.0454 1.0182 22.264 3 Median 1.0454 1.0182 22.264 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53298000 24379000 28918000 53298000 24379000 28918000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2918 1892 3044 15170;15171;15172 15559;15560 15559 2 ASEEHLKQHYIDLK FEQKGFRLVAMKFLRASEEHLKQHYIDLKD RASEEHLKQHYIDLKDRPFFPGLVKYMNSG R A S L K D 1 0 0 1 0 1 2 0 2 1 2 2 0 0 0 1 0 0 1 0 0 0 14 1 1709.8737 Q32Q12;J3KPD9;P22392;F6XY72 Q32Q12 183 196 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B yes no 3;4 0.005174 29.013 By MS/MS By matching By matching 2 2 1 1.324 1.3351 13.644 5 Median 1.3327 1.3301 1.0581 2 0 Median NaN NaN NaN 0 0 Median 1.1948 1.2221 12.507 2 0 Median 1.8276 1.6433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31304000 13548000 17756000 25763000 11201000 14562000 0 0 0 4851000 2126200 2724800 690150 220960 469190 0 0 0 0 0 0 2919 3008 3045 15173;15174;15175;15176;15177 15561;15562;15563 15562 3 ASEELQKDLEEVK ______________________________ ______________________________ M A S V K V 1 0 0 1 0 1 4 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 13 1 1516.7621 Q9HB71;B2ZWH1 Q9HB71 2 14 CACYBP Calcyclin-binding protein yes no 2 4.1768E-07 157.38 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1.0993 1.0736 8.7073 6 Median 1.0788 1.0736 0.25506 2 0 Median 1.2166 1.107 NaN 1 0 Median 1.1004 1.0926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0729 0.92405 4.722 2 0 Median 133450000 60336000 73114000 39439000 18483000 20956000 50254000 22191000 28063000 37252000 16702000 20550000 0 0 0 0 0 0 6505700 2960300 3545500 2920 4016 3046 15178;15179;15180;15181;15182;15183 15564;15565;15566;15567;15568 15567 5 ASEGPAFFPGR LDVPPGEDKGGYVIKASEGPAFFPGRCAEI YVIKASEGPAFFPGRCAEIFARGQSVGKLG K A S G R C 2 1 0 0 0 0 1 2 0 0 0 0 0 2 2 1 0 0 0 0 0 0 11 0 1134.5458 Q9NSD9 Q9NSD9 537 547 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0014 59.245 By MS/MS By matching 2 1 0.71035 0.76957 20.532 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64447 0.68747 15.954 2 0 Median 1.1063 0.92533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9224100 5914000 3310100 0 0 0 0 0 0 8200000 5377500 2822600 1024000 536540 487510 0 0 0 0 0 0 2921 4102 3047 15184;15185;15186 15569 15569 1 ASEIMVDDEELAQHPATTEDIR TDFLRAANPVDFLSKASEIMVDDEELAQHP DEELAQHPATTEDIRVCCQDIRVLGRKELR K A S I R V 3 1 0 3 0 1 4 0 1 2 1 0 1 0 1 1 2 0 0 1 0 0 22 0 2469.1329 Q8IY81 Q8IY81 270 291 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 2.539E-12 67.251 By matching By MS/MS By matching 1 2 1 0.78348 0.79178 23.8 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49391 0.53065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78348 0.79178 3.2531 2 1 Median 1.124 0.92397 NaN 1 0 Median 21806000 12240000 9565400 0 0 0 0 0 0 3020300 1906700 1113700 0 0 0 18194000 10038000 8156500 591220 296000 295210 2922 3338 3048 15187;15188;15189;15190 15570;15571;15572 15571 3 ASELKEEIK KEALENCITLQDFNRASELKEEIKALEDAR LQDFNRASELKEEIKALEDARINLLKETEQ R A S I K A 1 0 0 0 0 0 3 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 9 1 1045.5655 Q9BPX3;H0Y9Z8 Q9BPX3 518 526 NCAPG Condensin complex subunit 3 yes no 2 0.0091376 76.064 By matching By MS/MS By matching 1 1 1 1.0903 1.0158 25.072 3 Median 1.1295 1.1991 NaN 1 0 Median 1.0903 1.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76906 0.73258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5941400 2997700 2943700 663880 293470 370410 4277900 2019600 2258300 0 0 0 999590 684570 315010 0 0 0 0 0 0 2923 3778 3049 15191;15192;15193 15573;15574 15574 2 ASELLLPAAASLR SFIALSHKLGLPPGKASELLLPAAASLRQD GKASELLLPAAASLRQDLLLLQDQRSLWCW K A S L R Q 4 1 0 0 0 0 1 0 0 0 4 0 0 0 1 2 0 0 0 0 0 0 13 0 1310.7558 O94927;K7EQ61 O94927 507 519 HAUS5 HAUS augmin-like complex subunit 5 yes no 2 0.0031903 45.137 By matching By MS/MS By matching 1 1 1 0.65317 0.68828 20.126 3 Median 0.6299 0.61656 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65317 0.68828 NaN 1 0 Median 1.0469 0.91096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2068900 1196300 872520 460870 256160 204710 0 0 0 1478800 877420 601400 129170 62757 66412 0 0 0 0 0 0 2924 1739 3050 15194;15195;15196 15575;15576 15575 2 ASELNPESIYSVFK LSRGGYTTALKSFTKASELNPESIYSVFKV KASELNPESIYSVFKVAAIQQILGKYKEAV K A S F K V 1 0 1 0 0 0 2 0 0 1 1 1 0 1 1 3 0 0 1 1 0 0 14 0 1582.7879 Q6PGP7;D6RCE2 Q6PGP7 624 637 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.0019092 45.973 By MS/MS By matching By matching 1 1 1 1.0794 0.97679 18.454 3 Median 0.77309 0.7422 NaN 1 0 Median 1.2045 1.0541 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0794 0.97679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6634700 3421200 3213500 5248700 2863600 2385200 1267900 497790 770080 0 0 0 118110 59847 58267 0 0 0 0 0 0 2925 3169 3051 15197;15198;15199 15577;15578 15577 2 ASEMAGPPQMPNDFLSFQDIATEAAHPIR YYGLVMDLLVLGLHRASEMAGPPQMPNDFL LSFQDIATEAAHPIRLFCRYIDRIHIFFRF R A S I R L 5 1 1 2 0 2 2 1 1 2 1 0 2 2 4 2 1 0 0 0 0 0 29 0 3140.4696 Q6P2Q9 Q6P2Q9 1058 1086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.04348 10.148 By MS/MS By matching By matching By matching 1 1 1 1 0.46232 0.48824 28.273 4 Median 0.47918 0.48089 NaN 1 0 Median 0.43791 0.36983 NaN 1 0 Median 0.44605 0.4957 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6916 0.73419 NaN 1 0 Median NaN NaN NaN 0 0 Median 4917400 3063200 1854200 1898300 1279800 618510 977200 537460 439740 1297700 837510 460220 0 0 0 744110 408390 335720 0 0 0 2926 3157 3052 15200;15201;15202;15203 15579 15579 1 ASENAIVWK SGVQVICMKGKAKYKASENAIVWKIKRMAG GKAKYKASENAIVWKIKRMAGMKESQISAE K A S W K I 2 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 9 0 1016.5291 A0A087WY71;E9PFW3;Q96CW1;H7C4C3 A0A087WY71 345 353 AP2M1 AP-2 complex subunit mu yes no 2 0.013943 44.961 By MS/MS 1 1.276 1.2537 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.276 1.2537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5742800 2588500 3154300 0 0 0 0 0 0 5742800 2588500 3154300 0 0 0 0 0 0 0 0 0 2927 78 3053 15204 15580 15580 1 ASEPLLSPPPFGESR DNLAVPESPGVGGGKASEPLLSPPPFGESR ASEPLLSPPPFGESRKALEVKKEELGASSP K A S S R K 1 1 0 0 0 0 2 1 0 0 2 0 0 1 4 3 0 0 0 0 0 0 15 0 1582.7991 O14686 O14686 2268 2282 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.00034792 56.225 By MS/MS 1 0.40486 0.44493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40486 0.44493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2928300 1952800 975500 0 0 0 0 0 0 2928300 1952800 975500 0 0 0 0 0 0 0 0 0 2928 1490 3054 15205 15581 15581 1 ASESQILSIAEK SLPYNMEKVLDKVFRASESQILSIAEKMLD VFRASESQILSIAEKMLDTRVAENRDLGMN R A S E K M 2 0 0 0 0 1 2 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 12 0 1274.6718 Q5JRA6;A0A0A0MRH6 Q5JRA6 981 992 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.00059974 70.977 By MS/MS By MS/MS 1 1 1.1367 1.053 0.34937 2 Median 1.092 1.0556 NaN 1 0 Median 1.1834 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12203000 5183600 7019500 8405500 3425900 4979600 3797600 1757700 2039900 0 0 0 0 0 0 0 0 0 0 0 0 2929 3049 3055 15206;15207 15582;15583;15584;15585 15582 4 ASESSKPWPDATYGTGSASR AKEQTFSGGTSQDTKASESSKPWPDATYGT KPWPDATYGTGSASRASAVSELSPRERSPA K A S S R A 3 1 0 1 0 0 1 2 0 0 0 1 0 0 2 5 2 1 1 0 0 0 20 1 2053.9341 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 216 235 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 1.4688E-15 89.011 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 3 3 1.0377 0.89704 17.139 13 Median 0.76646 0.79799 NaN 1 0 Median 0.89222 0.8371 NaN 1 0 Median 1.1271 1.2775 11.142 2 2 Median 1.1557 1.1107 5.6624 3 2 Median 0.79881 0.87199 1.2364 3 0 Plateau 1.0377 0.89704 10.101 3 0 Median 89688000 43350000 46339000 6839500 3873400 2966100 4774700 2855100 1919700 23009000 9717300 13291000 14948000 6088800 8858900 31538000 16716000 14823000 8579100 4099300 4479800 2930 439 3056 15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220 15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599 15595 14 ASETPPPVAQPKPEAPHPGLETTLQER DLLAELNEVLGEEQKASETPPPVAQPKPEA PEAPHPGLETTLQERLALYQTAIESARQAG K A S E R L 3 1 0 0 0 2 4 1 1 0 2 1 0 0 7 1 3 0 0 1 0 0 27 1 2876.4668 Q6P1N0 Q6P1N0 117 143 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 4 0.0052269 24.941 By MS/MS 1 0.23241 0.22335 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23241 0.22335 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5829800 4982000 847830 0 0 0 0 0 0 0 0 0 5829800 4982000 847830 0 0 0 0 0 0 2931 3153 3057 15221 15600 15600 1 ASETVSEASPGSTASQTGVPTQVVQQVQGTQQR PQQYIVVTVSEGAMRASETVSEASPGSTAS VPTQVVQQVQGTQQRLLVQTSVQAKPGHVS R A S Q R L 3 1 0 0 0 7 2 3 0 0 0 0 0 0 2 5 5 0 0 5 0 0 33 0 3342.6288 P22670 P22670 112 144 RFX1 MHC class II regulatory factor RFX1 yes yes 3 4.413E-22 71.118 By MS/MS By matching 1 1 0.78259 0.75877 0.84095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69415 0.76329 NaN 1 0 Median 0.88231 0.75427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11230000 6456900 4772800 0 0 0 0 0 0 10494000 6037600 4456500 735660 419340 316320 0 0 0 0 0 0 2932 2104 3058 15222;15223 15601;15602 15601 2 ASEVEEILDGNDEK DHGYTTLATSVTLLKASEVEEILDGNDEKY KASEVEEILDGNDEKYKAVSISTEPPTYLR K A S E K Y 1 0 1 2 0 0 4 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 14 0 1546.6999 G5E975;A0A0U1RQQ2;B5MCL5;A0A2R8YEE8;Q12824;A0A0G2JRV3;C9JTA6;A0A0G2JSE9;A0A0U1RRB8;A0A2R8Y5N5 Q12824 93 106 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 5.9571E-55 229.82 By MS/MS By matching 3 2 0.99653 0.85941 20.56 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84433 0.85941 27.501 3 0 Median 1.0145 0.87933 6.5471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62738000 31010000 31728000 0 0 0 0 0 0 59571000 29520000 30051000 3166900 1489400 1677500 0 0 0 0 0 0 2933 1128;2761 3059 15224;15225;15226;15227;15228 15603;15604;15605;15606;15607 15607 5 ASEVEEILDGNDEKYK DHGYTTLATSVTLLKASEVEEILDGNDEKY SEVEEILDGNDEKYKAVSISTEPPTYLREQ K A S Y K A 1 0 1 2 0 0 4 1 0 1 1 2 0 0 0 1 0 0 1 1 0 0 16 1 1837.8582 G5E975;A0A0U1RQQ2;B5MCL5;A0A2R8YEE8;Q12824;A0A0G2JRV3;C9JTA6;A0A0G2JSE9;A0A0U1RRB8;A0A2R8Y5N5 Q12824 93 108 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2;3 0.00030202 77.64 By MS/MS By matching 2 3 0.92215 0.96483 10.62 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90163 0.96272 0.31043 2 0 Median 1.0458 0.99328 15.011 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14745000 7929900 6815200 0 0 0 0 0 0 13357000 7266900 6089700 1388400 662920 725520 0 0 0 0 0 0 2934 1128;2761 3060 15229;15230;15231;15232;15233 15608;15609;15610;15611 15610 4 ASEVFLQR ELYYVNRDTLFCYHKASEVFLQRLMALYVA TLFCYHKASEVFLQRLMALYVASHYKNSPN K A S Q R L 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 Q9H0A0;A0A087WV29 Q9H0A0 521 528 NAT10 N-acetyltransferase 10 yes no 2 0.0084743 62.717 By MS/MS 1 1.0304 1.0975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0304 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6534000 2938400 3595600 0 0 0 0 0 0 6534000 2938400 3595600 0 0 0 0 0 0 0 0 0 2935 3921 3061 15234 15612 15612 1 ASEVMGPVEAAPEYR EIMMKIEEYISKQAKASEVMGPVEAAPEYR ASEVMGPVEAAPEYRVIVDANNLTVEIENE K A S Y R V 3 1 0 0 0 0 3 1 0 0 0 0 1 0 2 1 0 0 1 2 0 0 15 0 1604.7505 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 77 91 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 3.1368E-09 122.7 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 3 1 0.73982 0.65366 26.553 8 Median 0.74137 0.70798 NaN 1 0 Median 0.73827 0.65093 NaN 1 0 Median 0.54636 0.54991 16.985 2 0 Median 0.87825 0.75407 17.879 3 0 Plateau 1.1857 1.1867 NaN 1 0 Median NaN NaN NaN 0 0 Median 60054000 33239000 26816000 9362900 5119600 4243200 567710 332950 234760 34692000 20776000 13917000 6358400 3219800 3138500 9073000 3790500 5282500 0 0 0 2936 3513 3062;3063 15235;15236;15237;15238;15239;15240;15241;15242 15613;15614;15615;15616;15617;15618;15619;15620 15613 1749 8 ASEWVQQVSGLMDGK CLCQVPQNAANRGLKASEWVQQVSGLMDGK ASEWVQQVSGLMDGKGGGKDVSAQATGKNV K A S G K G 1 0 0 1 0 2 1 2 0 0 1 1 1 0 0 2 0 1 0 2 0 0 15 0 1633.777 P49588 P49588 916 930 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.00024495 71.555 By MS/MS By matching By matching 2 1 1 1.2474 1.1324 4.3864 4 Median 1.1856 1.1776 3.1462 2 0 Median 1.2588 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2542 1.1135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12130000 5181400 6948800 8580700 3621800 4958900 3470600 1529000 1941600 0 0 0 78916 30675 48240 0 0 0 0 0 0 2937 2385 3064 15243;15244;15245;15246 15621;15622 15622 2 ASEYSPASLDAFGAFLK SSTLTLHHRIHARERASEYSPASLDAFGAF EYSPASLDAFGAFLKSCV____________ R A S L K S 4 0 0 1 0 0 1 1 0 0 2 1 0 2 1 3 0 0 1 0 0 0 17 0 1772.8621 B3KRF7;E9PC66;P17029 B3KRF7 331 347 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 yes no 2 0.004186 32.062 By MS/MS By matching 1 1 1.1621 1.1222 23.066 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89643 0.95329 NaN 1 0 Median 1.5066 1.321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1922200 962180 960020 0 0 0 0 0 0 1811500 916330 895130 110740 45852 64888 0 0 0 0 0 0 2938 583 3065 15247;15248 15623 15623 1 ASFAPISFAIK EASSSKTVPDGKLVKASFAPISFAIKAKEN KLVKASFAPISFAIKAKENDLLPLEKNRVK K A S I K A 3 0 0 0 0 0 0 0 0 2 0 1 0 2 1 2 0 0 0 0 0 0 11 0 1150.6386 Q12872 Q12872 574 584 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 2 0.030236 31.422 By matching By MS/MS By matching By matching 1 3 2 1 1.0259 1.0784 16.52 7 Median 1.1503 1.1705 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0784 3.8402 3 0 Median 1.191 1.0547 5.9254 2 0 Median 0.68975 0.7089 NaN 1 0 Median NaN NaN NaN 0 0 Median 6633600 3473500 3160100 726280 287680 438600 0 0 0 4932700 2672400 2260300 422850 189950 232900 551770 323480 228290 0 0 0 2939 2765 3066 15249;15250;15251;15252;15253;15254;15255 15624 15624 1 ASFDHSPDSLPLR ______________________________ KKASFDHSPDSLPLRSSGRQAKKKATETTD K A S L R S 1 1 0 2 0 0 0 0 1 0 2 0 0 1 2 3 0 0 0 0 0 0 13 0 1440.6997 H0Y6H0;Q8NB78 H0Y6H0 12 24 KDM1B Lysine-specific histone demethylase 1B yes no 3 0.012383 38.674 By MS/MS 1 0.8215 0.87981 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8215 0.87981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3962900 2281800 1681100 0 0 0 0 0 0 3962900 2281800 1681100 0 0 0 0 0 0 0 0 0 2940 1155 3067 15256 15625 15625 1 ASFGATGGPPAHLLTPSPLSGPGGSSLLEK MGTGPFSSSGHTAEKASFGATGGPPAHLLT PSPLSGPGGSSLLEKFELESGALTLPGGPA K A S E K F 3 0 0 0 0 0 1 6 1 0 5 1 0 1 5 5 2 0 0 0 0 0 30 0 2802.4552 O14686 O14686 3183 3212 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.047041 9.5444 By MS/MS 1 0.33891 0.37068 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33891 0.37068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2119200 1468100 651130 0 0 0 0 0 0 2119200 1468100 651130 0 0 0 0 0 0 0 0 0 2941 1490 3068 15257 15626 15626 1 ASFITPVPGGVGPMTVAMLMQSTVESAKR RKVVGDVAYDEAKERASFITPVPGGVGPMT TVAMLMQSTVESAKRFLEKFKPGKWMIQYN R A S K R F 3 1 0 0 0 1 1 3 0 1 1 1 3 1 3 3 3 0 0 4 0 0 29 1 2961.5126 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 265 293 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 9.9056E-21 64.733 By MS/MS By matching By matching 1 1 1 0.65965 0.67628 1.2145 3 Plateau 0.65965 0.68669 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5885 0.67628 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6014 0.6704 NaN 1 0 Median NaN NaN NaN 0 0 Median 6774200 4000600 2773600 6186000 3624500 2561500 0 0 0 210950 121850 89092 0 0 0 377270 254240 123030 0 0 0 2942 1968 3069 15258;15259;15260 15627;15628;15629 15628 3 ASFLYSLPHR DQTVKIWDLRQVRGKASFLYSLPHRHPVNA QVRGKASFLYSLPHRHPVNAACFSPDGARL K A S H R H 1 1 0 0 0 0 0 0 1 0 2 0 0 1 1 2 0 0 1 0 0 0 10 0 1189.6244 Q92466 Q92466 279 288 DDB2 DNA damage-binding protein 2 yes yes 2;3 0.00034968 87.308 By MS/MS By MS/MS 3 3 1.3355 1.1557 39.414 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62647 0.61651 NaN 1 0 Median 1.4272 1.2137 6.9233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26437000 10925000 15511000 0 0 0 0 0 0 18572000 8384600 10187000 7864600 2540800 5323800 0 0 0 0 0 0 2943 3527 3070 15261;15262;15263;15264;15265;15266 15630;15631;15632;15633;15634 15630 5 ASFNHFDK RDAKGISQEQMQEFRASFNHFDKDHGGALG EQMQEFRASFNHFDKDHGGALGPEEFKACL R A S D K D 1 0 1 1 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 8 0 964.44028 O43707;F5GXS2;H7C144 O43707 772 779 ACTN4 Alpha-actinin-4 yes no 2 0.01794 48.283 By MS/MS 2 1.0549 0.91385 1.3124 2 Median NaN NaN NaN 0 0 Median 1.0549 0.91385 1.3124 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8318000 4103900 4214200 0 0 0 8318000 4103900 4214200 0 0 0 0 0 0 0 0 0 0 0 0 2944 1585 3071 15267;15268 15635;15636 15636 2 ASFNHFDKDHGGALGPEEFK RDAKGISQEQMQEFRASFNHFDKDHGGALG FDKDHGGALGPEEFKACLISLGYDVENDRQ R A S F K A 2 0 1 2 0 0 2 3 2 0 1 2 0 3 1 1 0 0 0 0 0 0 20 1 2202.013 O43707;F5GXS2 O43707 772 791 ACTN4 Alpha-actinin-4 yes no 3;4 1.3078E-05 41.711 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 0.85222 0.85234 8.6422 8 Median 0.91245 0.94889 4.2799 2 0 Median 0.90751 0.84067 5.7372 3 0 Plateau 0.73837 0.84367 3.3951 2 0 Median 0.91167 0.86843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129030000 66633000 62396000 80075000 41553000 38522000 30635000 15628000 15008000 14941000 7900100 7041000 3377600 1552000 1825600 0 0 0 0 0 0 2945 1585 3072 15269;15270;15271;15272;15273;15274;15275;15276 15637;15638;15639;15640;15641;15642;15643;15644;15645 15639 9 ASFNHFDR RDAKGISQEQMNEFRASFNHFDRDHSGTLG EQMNEFRASFNHFDRDHSGTLGPEEFKACL R A S D R D 1 1 1 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 992.44643 P12814;H9KV75;H7C5W8;P35609;A0A494C1A0;H0YJW3;H0YJ11;Q08043;F6THM6;A0A494C060;A0A087WSZ2 P12814 753 760 ACTN1;ACTN2;ACTN3 Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 yes no 2 0.0022926 110.81 By MS/MS 2 1.2157 1.0361 11.417 2 Median NaN NaN NaN 0 0 Median 1.2157 1.0361 11.417 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12781000 5583900 7196600 0 0 0 12781000 5583900 7196600 0 0 0 0 0 0 0 0 0 0 0 0 2946 1983 3073 15277;15278 15646;15647 15647 2 ASFNHFDRDHSGTLGPEEFK RDAKGISQEQMNEFRASFNHFDRDHSGTLG FDRDHSGTLGPEEFKACLISLGYDIGNDPQ R A S F K A 1 1 1 2 0 0 2 2 2 0 1 1 0 3 1 2 1 0 0 0 0 0 20 1 2290.0403 P12814 P12814 753 772 ACTN1 Alpha-actinin-1 yes yes 3;4 0.03987 11.956 By MS/MS By matching 3 1 2.4011 2.4359 47.44 4 Linear 2.3364 2.4359 53.539 3 0 Plateau NaN NaN NaN 0 0 Median 2.2822 2.5851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60161000 19116000 41044000 43917000 15406000 28512000 0 0 0 16243000 3710600 12533000 0 0 0 0 0 0 0 0 0 2947 1983 3074 15279;15280;15281;15282 15648;15649 15648 2 ASFNNPDR MSMGYEREQVIAALRASFNNPDRAVEYLLM QVIAALRASFNNPDRAVEYLLMGIPGDRES R A S D R A 1 1 2 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 8 0 919.41479 P54727;H0Y579 P54727 213 220 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.047416 35.295 By MS/MS By matching 1 1 0.94436 0.87876 7.1464 2 Median NaN NaN NaN 0 0 Median 1.0764 0.92431 NaN 1 0 Median 0.82854 0.83546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2766700 1276300 1490500 0 0 0 2511900 1154500 1357400 254820 121750 133070 0 0 0 0 0 0 0 0 0 2948 2486 3075 15283;15284 15650 15650 1 ASFPQGPIGGANR KLAGVTALSCWLPLRASFPQGPIGGANRDI LRASFPQGPIGGANRDISILQCHGDCDPLV R A S N R D 2 1 1 0 0 1 0 3 0 1 0 0 0 1 2 1 0 0 0 0 0 0 13 0 1270.6418 A0A087X1K9;E5RGR0;O75608 A0A087X1K9 86 98 LYPLA1 Acyl-protein thioesterase 1 yes no 2 0.0024097 65.347 By MS/MS 1 0.81569 0.77414 NaN 1 Median 0.81569 0.77414 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14741000 7905400 6835800 14741000 7905400 6835800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2949 122 3076 15285 15651 15651 1 ASFSVLGDILGSAMR LSLKLPPNVVEESARASFSVLGDILGSAMR ASFSVLGDILGSAMRNTQNLLQMPYGCGEQ R A S M R N 2 1 0 1 0 0 0 2 0 1 2 0 1 1 0 3 0 0 0 1 0 0 15 0 1522.7814 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 950 964 yes yes 2 0.00031947 64.55 By MS/MS 2 0.057947 0.058025 NaN 1 Median 0.057947 0.058025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4304400 4234200 70135 4304400 4234200 70135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 2950 734 3077 15286;15287 15652;15653 15653 2 ASGADSKGDDLSTAILK ______________________________ GADSKGDDLSTAILKQKNRPNRLIVDEAIN M A S L K Q 3 0 0 3 0 0 0 2 0 1 2 2 0 0 0 3 1 0 0 0 0 0 17 1 1647.8315 P55072 P55072 2 18 VCP Transitional endoplasmic reticulum ATPase yes yes 2 7.6369E-11 104.17 By MS/MS By matching By MS/MS By matching By MS/MS 3 2 2 1 2 1.1426 1.1658 34.647 10 Median 1.1006 1.1362 7.7914 3 0 Median 1.1952 1.1062 1.5291 2 0 Median 0.68299 0.77214 75.814 2 1 Median 1.4013 1.3689 NaN 1 0 Median 1.2395 1.4196 24.218 2 1 Median NaN NaN NaN 0 0 Median 241150000 110950000 130200000 200330000 92208000 108120000 21515000 9847300 11668000 12434000 5872600 6561900 751770 312510 439260 6115000 2706200 3408800 0 0 0 2951 2494 3078 15288;15289;15290;15291;15292;15293;15294;15295;15296;15297 15654;15655;15656;15657;15658;15659;15660;15661;15662 15657 9 ASGANYSFHK EEDVEPECIMEKVAKASGANYSFHKESGRF EKVAKASGANYSFHKESGRFQDVGPQAPVG K A S H K E 2 0 1 0 0 0 0 1 1 0 0 1 0 1 0 2 0 0 1 0 0 0 10 0 1080.4989 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 135 144 DBNL Drebrin-like protein yes no 2 0.011083 43.083 By matching By MS/MS 1 1 1.1966 1.1097 24.37 2 Median 1.3374 1.3184 NaN 1 0 Median 1.0706 0.93402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1557800 751920 805930 362510 172150 190360 1195300 579770 615560 0 0 0 0 0 0 0 0 0 0 0 0 2952 4298 3079 15298;15299 15663 15663 1 ASGDLIPWTVSEQFQDPDFGGLSGGR ISRQSILNSLSRGKKASGDLIPWTVSEQFQ EQFQDPDFGGLSGGRVVRIAVHPDYQGMGY K A S G R V 1 1 0 3 0 2 1 5 0 1 2 0 0 2 2 3 1 1 0 1 0 0 26 0 2735.2827 Q9H0A0;A0A087WV29 Q9H0A0 600 625 NAT10 N-acetyltransferase 10 yes no 3 0.034261 11.523 By matching By MS/MS 1 1 0.57067 0.62939 75.117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32483 0.37003 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0026 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median 2183000 1390700 792240 0 0 0 0 0 0 799030 604030 195000 0 0 0 1384000 786710 597240 0 0 0 2953 3921 3080 15300;15301 15664;15665 15664 2 ASGDSARPVLLQVAESAYR EGTLPFNLAEAQRQKASGDSARPVLLQVAE SARPVLLQVAESAYRFGLGSVAGAVGATAV K A S Y R F 4 2 0 1 0 1 1 1 0 0 2 0 0 0 1 3 0 0 1 2 0 0 19 1 1989.028 Q9UJS0 Q9UJS0 313 331 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 3 4.7584E-09 85.087 By MS/MS By matching 1 1 0.86866 0.8217 21.515 2 Median 0.71631 0.70573 NaN 1 0 Median 1.0534 0.95671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11030000 6215200 4815100 9558900 5519900 4039000 1471400 695300 776130 0 0 0 0 0 0 0 0 0 0 0 0 2954 4297 3081 15302;15303 15666;15667 15667 2 ASGEMASAQYITAALR PELKDALKRYAGALRASGEMASAQYITAAL SGEMASAQYITAALRDLFDSMDKTSSSIPP R A S L R D 5 1 0 0 0 1 1 1 0 1 1 0 1 0 0 2 1 0 1 0 0 0 16 0 1638.8036 A6NJA2;P54578 A6NJA2 96 111 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 6.8822E-11 116.54 By MS/MS By matching By MS/MS 2 1 1 1.1072 1.078 13.439 4 Median 1.0089 0.98291 21.177 2 1 Median 1.2472 1.0566 NaN 1 0 Median 1.0713 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25258000 12269000 12988000 14354000 7002400 7351800 5301800 2562300 2739500 5601600 2704700 2897000 0 0 0 0 0 0 0 0 0 2955 523 3082 15304;15305;15306;15307 15668;15669;15670;15671;15672 15668 5 ASGESEEASPSLTAEER AAAFGDEEKKMAAGKASGESEEASPSLTAE GESEEASPSLTAEEREALGGLDSRLFGFVR K A S E R E 3 1 0 0 0 0 5 1 0 0 1 0 0 0 1 4 1 0 0 0 0 0 17 0 1748.7701 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;A0A087WUN6 O15550 30 46 KDM6A Lysine-specific demethylase 6A yes no 2 3.2169E-05 51.875 By MS/MS By MS/MS 1 1 0.80916 0.79379 9.1162 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68015 0.74423 NaN 1 0 Median 0.96265 0.84664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3530400 2081000 1449400 0 0 0 0 0 0 2260400 1375900 884530 1270000 705060 564920 0 0 0 0 0 0 2956 111 3083 15308;15309 15673;15674 15673 2 ASGFEESMK KGTYFPTWEGLFWEKASGFEESMKWKKLTN GLFWEKASGFEESMKWKKLTNAQRSGLNQI K A S M K W 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 2 0 0 0 0 0 0 9 0 984.42225 Q6P2Q9;I3L3Z8 Q6P2Q9 1506 1514 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0032184 66.621 By MS/MS By matching 1 1 0.9307 0.92144 4.0667 2 Median NaN NaN NaN 0 0 Median 1.0181 0.89532 NaN 1 0 Median 0.85078 0.94833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4129800 2177900 1951900 0 0 0 1588300 751320 836970 2541500 1426600 1114900 0 0 0 0 0 0 0 0 0 2957 3157 3084 15310;15311 15675 15675 1 ASGGLPQFGDEYDFYR SFVKFALGSVVAVTKASGGLPQFGDEYDFY SGGLPQFGDEYDFYRSFPGFQAFCETQGDR K A S Y R S 1 1 0 2 0 1 1 3 0 0 1 0 0 2 1 1 0 0 2 0 0 0 16 0 1820.8006 Q01780;K7EJ37 Q01780 49 64 EXOSC10 Exosome component 10 yes no 2 0.00084192 41.54 By MS/MS By MS/MS By matching 1 1 2 1.0316 1.1032 9.4365 4 Linear 1.0246 1.0315 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.98942 1.0512 NaN 1 0 Median 1.0429 0.88803 3.4421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10781000 5337700 5443600 1141500 571790 569680 0 0 0 9227400 4578700 4648700 412480 187250 225230 0 0 0 0 0 0 2958 2691 3085 15312;15313;15314;15315 15676;15677;15678;15679 15678 4 ASGGSGGVSVPALWSEVNR ______________________________ SGGVSVPALWSEVNRYGQNGDFTRALKTVN M A S N R Y 2 1 1 0 0 0 1 4 0 0 1 0 0 0 1 4 0 1 0 3 0 0 19 0 1828.9068 O76094;R4GNC1 O76094 2 20 SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0003217 53.252 By MS/MS 1 0.95367 0.94144 NaN 1 Median 0.95367 0.94144 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2142900 884190 1258700 2142900 884190 1258700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2959 1721 3086 15316 15680 15680 1 ASGGSLQGHDAVLR LLMYLMDLTHLILDKASGGSLQGHDAVLRL KASGGSLQGHDAVLRLVEIRTVLEKLRPLD K A S L R L 2 1 0 1 0 1 0 3 1 0 2 0 0 0 0 2 0 0 0 1 0 0 14 0 1366.6953 Q8NEJ9;H0YJ17;G3V4G1 Q8NEJ9 75 88 NGDN Neuroguidin yes no 3 0.00026899 52.891 By MS/MS By MS/MS 1 1 1.383 1.2953 4.4474 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2135 1.2552 NaN 1 0 Median 1.5762 1.3367 NaN 1 1 Median 7286500 3645000 3641500 0 0 0 0 0 0 0 0 0 0 0 0 5953900 3105500 2848500 1332500 539500 793040 2960 3430 3087 15317;15318 15681;15682;15683 15682 3 ASGKFELLDR LGFTGGIVQGLDLYRASGKFELLDRILPKL LDLYRASGKFELLDRILPKLRATNHKVLLF R A S D R I 1 1 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1134.6033 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YFV8;P51531;F6VDE0;A0A0U1RQZ9 P51532 1078 1087 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.0030996 98.04 By MS/MS 1 0.80732 0.96725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80732 0.96725 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25753000 13477000 12277000 0 0 0 0 0 0 25753000 13477000 12277000 0 0 0 0 0 0 0 0 0 2961 366;2433 3088 15319 15684 15684 1 ASGLGEAGMSAWLR QEDLAEEAPCLQGGRASGLGEAGMSAWLRA RASGLGEAGMSAWLRAIGLERYEEGLVHNG R A S L R A 3 1 0 0 0 0 1 3 0 0 2 0 1 0 0 2 0 1 0 0 0 0 14 0 1404.682 O15357;H7BXR2 O15357 1193 1206 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.0004518 69.979 By MS/MS 1 2.3721 2.2987 NaN 1 Median 2.3721 2.2987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3845500 1554500 2291000 3845500 1554500 2291000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2962 1539 3089 15320 15685 15685 1 ASGNYATVISHNPETK CCLEEKPGDRGKLARASGNYATVISHNPET SGNYATVISHNPETKKTRVKLPSGSKKVIS R A S T K K 2 0 2 0 0 0 1 1 1 1 0 1 0 0 1 2 2 0 1 1 0 0 16 0 1687.8166 P62917;E9PKZ0;G3V1A1 P62917 129 144 RPL8 60S ribosomal protein L8 yes no 2;3 6.6957E-11 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 3 5 4 6 1.0178 0.93516 14.634 26 Median 0.96227 0.87918 20.121 5 0 Median 1.0276 0.85913 24.419 5 1 Median 1.0037 0.941 4.1547 3 0 Plateau 1.088 0.90919 3.6254 3 1 Median 0.96764 0.98181 10.546 4 0 Median 1.2425 1.0177 10.778 6 1 Median 791880000 387850000 404030000 443880000 221350000 222540000 118350000 57126000 61222000 35650000 17482000 18168000 31595000 14933000 16662000 134270000 64331000 69941000 28128000 12628000 15500000 2963 2610 3090 15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335;15336;15337;15338;15339;15340;15341;15342;15343;15344;15345;15346;15347;15348 15686;15687;15688;15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702;15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736 15734 51 ASGNYATVISHNPETKK CCLEEKPGDRGKLARASGNYATVISHNPET GNYATVISHNPETKKTRVKLPSGSKKVISS R A S K K T 2 0 2 0 0 0 1 1 1 1 0 2 0 0 1 2 2 0 1 1 0 0 17 1 1815.9115 P62917;E9PKZ0;G3V1A1 P62917 129 145 RPL8 60S ribosomal protein L8 yes no 3;4 5.356E-06 69.188 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 4 1 3 4 2 1.0259 0.96209 16.133 17 Median 0.92173 0.8891 6.9016 3 0 Median 1.0304 0.93511 4.1815 4 0 Median 1.1973 1.2594 NaN 1 0 Median 1.0167 0.89276 22.526 3 2 Median 1.0527 1.1214 12.978 4 0 Median 1.2137 1.0335 0.7426 2 0 Median 222750000 109690000 113060000 99546000 50928000 48619000 28118000 13638000 14480000 1297100 658340 638720 13828000 5721400 8106400 75530000 36791000 38739000 4428300 1952100 2476200 2964 2610 3091 15349;15350;15351;15352;15353;15354;15355;15356;15357;15358;15359;15360;15361;15362;15363;15364;15365 15737;15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748;15749;15750;15751;15752;15753;15754;15755;15756;15757;15758;15759;15760 15739 24 ASGPGLNTTGVPASLPVEFTIDAK FKVKVLPTHDASKVKASGPGLNTTGVPASL GVPASLPVEFTIDAKDAGEGLLAVQITDPE K A S A K D 3 0 1 1 0 0 1 3 0 1 2 1 0 1 3 2 3 0 0 2 0 0 24 0 2341.2165 P21333;Q60FE5;A0A087WWY3 P21333 1550 1573 FLNA Filamin-A no no 2;3 9.9015E-35 127.83 By MS/MS By MS/MS By matching 5 4 2 0.70485 0.67996 12.554 11 Median 0.70485 0.67996 5.732 5 0 Median 0.66242 0.58036 8.9876 4 0 Median 0.71132 0.79238 8.1004 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77081000 44285000 32797000 49862000 28347000 21515000 17902000 10607000 7295000 9317200 5330700 3986500 0 0 0 0 0 0 0 0 0 2965 2088;3120 3092 15366;15367;15368;15369;15370;15371;15372;15373;15374;15375;15376 15761;15762;15763;15764;15765;15766;15767;15768;15769;15770;15771 15771 11 ASGPPVSELITK KKKAKKAGATAGKRKASGPPVSELITKAVA KRKASGPPVSELITKAVAASKERSGVSLAA K A S T K A 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 2 1 0 0 1 0 0 12 0 1197.6605 P10412;P16402;P16403 P16402 36 47 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 3.4356E-06 108.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 7 7 0.91974 0.75024 28.73 23 Median 0.86471 0.78315 NaN 1 0 Median 1.3404 1.1212 39.514 2 0 Median 0.6304 0.60195 10.389 3 0 Median 1.6687 1.3377 25.808 4 0 Median 0.65242 0.63608 2.9822 6 0 Linear 0.97454 0.82146 13.21 7 0 Median 6367200000 3605900000 2761200000 59798000 31136000 28663000 20593000 10127000 10466000 312100000 182540000 129570000 180870000 73153000 107710000 4154000000 2475000000 1679000000 1639800000 834000000 805780000 2966 2028;1937;2029 3093 15377;15378;15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389;15390;15391;15392;15393;15394;15395;15396;15397;15398;15399;15400 15772;15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787;15788;15789;15790;15791;15792;15793;15794;15795;15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861;15862 15826 91 ASGPPVSELITKAVAASK KKKAKKAGATAGKRKASGPPVSELITKAVA PPVSELITKAVAASKERSGVSLAALKKALA K A S S K E 4 0 0 0 0 0 1 1 0 1 1 2 0 0 2 3 1 0 0 2 0 0 18 1 1724.9672 P10412;P16402;P16403 P16402 36 53 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 3.2589E-05 47.752 By matching By MS/MS By matching 1 3 2 0.72374 0.74367 57.445 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77597 0.81659 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6214 0.65697 6.0814 3 0 Median 1.7385 1.4954 91.274 2 0 Median 19281000 11060000 8220500 0 0 0 0 0 0 1174700 543320 631360 0 0 0 15602000 9504400 6097100 2504600 1012700 1492000 2967 2028;1937;2029 3094 15401;15402;15403;15404;15405;15406 15863;15864 15863 2 ASGQAFELILSPR ______________________________ KRASGQAFELILSPRSKESVPEFPLSPPKK R A S P R S 2 1 0 0 0 1 1 1 0 1 2 0 0 1 1 2 0 0 0 0 0 0 13 0 1387.746 A2A2D0;P16949 A2A2D0 15 27 STMN1 Stathmin yes no 2;3 4.5031E-07 145.55 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1.0985 0.94678 13.484 9 Median 0.99729 0.97065 16.043 4 0 Median 1.261 1.0545 15.238 2 0 Median 0.88276 0.8948 2.5295 2 0 Median 1.3699 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111810000 56146000 55665000 91727000 46018000 45709000 7731300 3568700 4162600 12057000 6393900 5663400 295160 165750 129420 0 0 0 0 0 0 2968 496 3095 15407;15408;15409;15410;15411;15412;15413;15414;15415 15865;15866;15867;15868;15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880 15875 16 ASGSYAVQEKPEPVPLESR YDTMVEEQYGQMYIKASGSYAVQEKPEPVP YAVQEKPEPVPLESRSCVLIRRDLVALPAS K A S S R S 2 1 0 0 0 1 3 1 0 0 1 1 0 0 3 3 0 0 1 2 0 0 19 1 2043.0273 Q96BF6 Q96BF6 290 308 NACC2 Nucleus accumbens-associated protein 2 yes yes 3 1.7784E-10 95.409 By MS/MS By MS/MS 1 1 0.57793 0.57041 9.2054 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50306 0.53446 NaN 1 0 Median 0.66395 0.60877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13350000 8489100 4861000 0 0 0 0 0 0 11045000 7235500 3809500 2305100 1253600 1051500 0 0 0 0 0 0 2969 3606 3096 15416;15417 15881;15882;15883;15884 15881 4 ASGVAVSDGVIK ______________________________ ______________________________ M A S I K V 2 0 0 1 0 0 0 2 0 1 0 1 0 0 0 2 0 0 0 3 0 0 12 0 1101.603 P23528;E9PP50;E9PS23 P23528 2 13 CFL1 Cofilin-1 yes no 2 3.6582E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 5 4 3 4 1 1.1782 1.0557 14.722 25 Median 1.1264 1.0369 12.435 8 0 Median 1.2343 1.0181 5.4194 5 0 Median 1.1544 1.1052 5.1075 4 0 Median 1.2254 1.019 4.1117 3 0 Plateau 1.3541 1.4406 14.374 4 0 Median 1.3491 1.0732 NaN 1 0 Median 5075600000 2285800000 2789800000 2929800000 1337600000 1592200000 1407600000 612170000 795440000 627140000 288170000 338980000 72797000 32174000 40624000 33618000 13829000 19788000 4624200 1850100 2774100 2970 2118 3097 15418;15419;15420;15421;15422;15423;15424;15425;15426;15427;15428;15429;15430;15431;15432;15433;15434;15435;15436;15437;15438;15439;15440;15441;15442 15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932 15918 48 ASGVEGADVVK KIDEAILITWTKRFKASGVEGADVVKLLNK KRFKASGVEGADVVKLLNKAIKKRGDYDAN K A S V K L 2 0 0 1 0 0 1 2 0 0 0 1 0 0 0 1 0 0 0 3 0 0 11 0 1030.5295 P19367 P19367 177 187 HK1 Hexokinase-1 yes yes 2 0.00016036 95.775 By matching By MS/MS 2 2 1.0272 0.95482 22.6 4 Median 0.79303 0.79596 7.3023 2 0 Median 1.3415 1.1574 8.7832 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15110000 7597900 7512000 4133800 2786200 1347600 10976000 4811700 6164500 0 0 0 0 0 0 0 0 0 0 0 0 2971 2064 3098 15443;15444;15445;15446 15933;15934;15935 15934 3 ASGVQVADEVCR ______________________________ ______________________________ M A S C R I 2 1 0 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 3 0 0 12 0 1289.6034 P60981;F6RFD5 P60981 2 13 DSTN Destrin yes no 2 8.182E-06 157.96 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.3093 1.0856 9.4599 5 Median 1.2795 1.2357 NaN 1 0 Median 1.3244 1.0846 0.13569 2 0 Median 1.0561 1.0699 NaN 1 0 Median 1.468 1.3182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25973000 10420000 15553000 15419000 5840100 9579300 8299200 3517500 4781700 2088900 994770 1094200 165470 67269 98200 0 0 0 0 0 0 2972 2533 3099 15447;15448;15449;15450;15451 15936;15937;15938;15939;15940;15941 15939 6 ASGVTVNDEVIK ______________________________ ______________________________ M A S I K V 1 0 1 1 0 0 1 1 0 1 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1230.6456 Q9Y281;F8WDN3;G3V2U0 Q9Y281 2 13 CFL2 Cofilin-2 yes no 2 0.00047076 78.098 By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 1.0104 0.98946 25.554 8 Median 1.1286 1.1398 11.633 2 0 Median 0.98984 0.86092 9.6554 2 0 Median 0.94731 1.0232 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68256 0.73223 46.483 2 0 Median 1.1219 0.96249 NaN 1 0 Median 143710000 69367000 74346000 95828000 46084000 49744000 16218000 7152000 9065500 2461000 1254000 1207000 0 0 0 19506000 10247000 9259400 9700900 4630700 5070200 2973 4378 3100 15452;15453;15454;15455;15456;15457;15458;15459 15942;15943;15944;15945 15943 4 ASHEEVEGLVEK LALLKAVDTWSWGERASHEEVEGLVEKIRF GERASHEEVEGLVEKIRFPMMLPEELFELQ R A S E K I 1 0 0 0 0 0 4 1 1 0 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1325.6463 Q08380 Q08380 334 345 LGALS3BP Galectin-3-binding protein yes yes 2;3 3.9018E-06 106.29 By MS/MS By MS/MS 5 3 1.0179 0.97143 37.293 8 Median 0.98268 0.94102 12.499 5 2 Median 1.4267 1.1962 47.325 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45703000 19478000 26225000 28968000 13827000 15141000 16735000 5651400 11083000 0 0 0 0 0 0 0 0 0 0 0 0 2974 2739 3101 15460;15461;15462;15463;15464;15465;15466;15467 15946;15947;15948;15949;15950;15951;15952;15953;15954;15955 15953 10 ASHHIYPYSSSQDDEEWLRPVMR IIKRHQGTFTDEKSKASHHIYPYSSSQDDE SSSQDDEEWLRPVMRKEKQVLVHWGFYPDS K A S M R K 1 2 0 2 0 1 2 0 2 1 1 0 1 0 2 4 0 1 2 1 0 0 23 1 2802.282 Q92922 Q92922 202 224 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 4;5 3.2271E-29 116.98 By MS/MS 2 0.82606 1.0047 1.1678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82606 1.0047 1.1678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28098000 14119000 13979000 0 0 0 0 0 0 28098000 14119000 13979000 0 0 0 0 0 0 0 0 0 2975 3567 3102 15468;15469 15956;15957;15958 15957 3 ASHTAPQVLFSHR VIGKVFMQEFKEGRRASHTAPQVLFSHREP RRASHTAPQVLFSHREPPLELKDTDAAVGD R A S H R E 2 1 0 0 0 1 0 0 2 0 1 0 0 1 1 2 1 0 0 1 0 0 13 0 1449.7477 O15144;H7C3F9 O15144 191 203 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2;3 2.1873E-07 143.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 3 2 2 1 1.2428 0.97421 13.11 10 Linear 1.047 0.97923 NaN 1 0 Median 1.2948 1.0767 NaN 1 0 Median 0.97665 1.0411 10.021 3 0 Median 1.0419 0.89807 11.316 2 0 Median 0.85477 0.90803 10.142 2 0 Median 0.86439 0.7502 NaN 1 0 Median 85602000 36822000 48780000 25706000 10493000 15214000 14661000 5435500 9225700 25129000 11350000 13778000 15477000 7162500 8314700 3977200 2025000 1952200 651360 356020 295340 2976 1526 3103 15470;15471;15472;15473;15474;15475;15476;15477;15478;15479 15959;15960;15961;15962;15963;15964;15965;15966;15967 15962 9 ASIAQAVR TGCVAGVLLQPSGAKASIAQAVRDGLLPTG LQPSGAKASIAQAVRDGLLPTGLGQRLLEA K A S V R D 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 8 0 814.4661 P58107;A0A075B730 P58107 1260 1267 EPPK1 Epiplakin yes no 2 0.025155 42.869 By MS/MS 2 1.1683 0.98862 16.571 2 Median NaN NaN NaN 0 0 Median 1.1683 0.98862 16.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3304600 1718100 1586500 0 0 0 3304600 1718100 1586500 0 0 0 0 0 0 0 0 0 0 0 0 2977 2520 3104 15480;15481 15968;15969;15970 15969 3 ASIGQSPGLPSTTFK PNSSTSEVSSTSASKASIGQSPGLPSTTFK ASIGQSPGLPSTTFKLPSNSLGFTATHNTS K A S F K L 1 0 0 0 0 1 0 2 0 1 1 1 0 1 2 3 2 0 0 0 0 0 15 0 1489.7777 Q5VT52 Q5VT52 609 623 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.000353 57.175 By MS/MS 1 0.57752 0.6045 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57752 0.6045 NaN 1 0 Median NaN NaN NaN 0 0 Median 6737900 3917100 2820900 0 0 0 0 0 0 0 0 0 0 0 0 6737900 3917100 2820900 0 0 0 2978 3110 3105 15482 15971 15971 1 ASIHEAWTDGK RLERLDHLAEKFRQKASIHEAWTDGKEAML FRQKASIHEAWTDGKEAMLKHRDYETATLS K A S G K E 2 0 0 1 0 0 1 1 1 1 0 1 0 0 0 1 1 1 0 0 0 0 11 0 1213.5728 O43707;P12814;H9KV75 O43707 422 432 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2;3 4.2863E-05 148.94 By MS/MS By MS/MS By MS/MS By matching 2 6 1 1 0.83638 0.7736 43.524 10 Median 0.84457 0.84069 10.791 2 0 Median 0.651 0.55837 48.619 6 0 Median 0.61102 0.6393 NaN 1 0 Median 1.1978 1.0428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84277000 47142000 37134000 6277200 2940200 3337000 74610000 42563000 32047000 1505900 844220 661670 1883700 795280 1088400 0 0 0 0 0 0 2979 1585;1983 3106 15483;15484;15485;15486;15487;15488;15489;15490;15491;15492 15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982 15977 11 ASIHEAWTDGKEAMLK RLERLDHLAEKFRQKASIHEAWTDGKEAML SIHEAWTDGKEAMLKHRDYETATLSDIKAL K A S L K H 3 0 0 1 0 0 2 1 1 1 1 2 1 0 0 1 1 1 0 0 0 0 16 1 1785.872 O43707 O43707 422 437 ACTN4 Alpha-actinin-4 yes yes 2;3;4 9.7018E-06 87.001 By MS/MS 3 1.0531 1.1054 9.4639 3 Median 1.0531 1.1054 9.4639 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41352000 20685000 20667000 41352000 20685000 20667000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2980 1585 3107 15493;15494;15495 15983;15984;15985;15986 15986 4 ASIHEAWTDGKEAMLR RLERLDHLAEKFRQKASIHEAWTDGKEAML SIHEAWTDGKEAMLRQKDYETATLSEIKAL K A S L R Q 3 1 0 1 0 0 2 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 16 1 1813.8781 P12814;H9KV75 P12814 403 418 ACTN1 Alpha-actinin-1 yes no 4 0.015437 28.956 By MS/MS 1 1.5306 1.5924 NaN 1 Median 1.5306 1.5924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052500 1508500 2544100 4052500 1508500 2544100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2981 1983 3108 15496 15987 15987 0 ASINMLR RLRQIFNGTFVKLNKASINMLRIVEPYIAW GTFVKLNKASINMLRIVEPYIAWGYPNLKS K A S L R I 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 7 0 803.43236 P18124;A8MUD9;C9JIJ5 P18124 128 134 RPL7 60S ribosomal protein L7 yes no 2 0.0037366 102.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 1.3608 1.1257 8.8289 9 Median 1.0782 1.0069 NaN 1 0 Median 1.3027 1.0947 8.1442 2 0 Median 1.2133 1.182 18.435 2 0 Median 1.4249 1.1886 NaN 1 0 Median 1.1047 1.116 NaN 1 1 Median 1.4015 1.127 0.15885 2 0 Median 149130000 68176000 80957000 55652000 26369000 29283000 31484000 14622000 16862000 10119000 3975000 6143900 6162900 2507100 3655900 27768000 12633000 15135000 17947000 8070000 9877100 2982 2056 3109 15497;15498;15499;15500;15501;15502;15503;15504;15505 15988;15989;15990;15991;15992;15993;15994;15995;15996;15997;15998;15999;16000;16001;16002 15998 15 ASIPFSVVGSNQLIEAK SDEDEDFKEQTRLLKASIPFSVVGSNQLIE IPFSVVGSNQLIEAKGKKVRGRLYPWGVVE K A S A K G 2 0 1 0 0 1 1 1 0 2 1 1 0 1 1 3 0 0 0 2 0 0 17 0 1758.9516 Q15019;B5MCX3;H7C2Y0 Q15019 233 249 SEPT2 Septin-2 yes no 2;3 5.4374E-12 142.83 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 2 3 2 0.89362 0.91757 7.9119 12 Median 0.8174 0.75651 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8868 0.91425 4.2689 4 0 Median 1.1055 0.94214 1.9261 2 0 Median 0.89886 0.89915 9.8398 3 0 Median 1.1476 0.9563 3.9662 2 0 Median 292420000 150130000 142290000 13252000 6981700 6270600 0 0 0 224300000 116780000 107520000 39591000 18667000 20925000 12543000 6398500 6144000 2735300 1302100 1433200 2983 2914 3110 15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517 16003;16004;16005;16006;16007;16008;16009;16010;16011;16012 16012 10 ASITALEAK VKLQEMEGTVKSKYKASITALEAKIAQLEE VKSKYKASITALEAKIAQLEEQLDNETKER K A S A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 P35579 P35579 1807 1815 MYH9 Myosin-9 yes yes 2 0.0019312 76.064 By MS/MS By MS/MS By matching By matching By MS/MS 1 4 3 3 1 1.0769 1.039 23.457 11 Median 1.1654 1.123 NaN 1 0 Median 1.0611 0.93261 26.858 4 0 Median 1.042 1.039 29.236 3 0 Median 1.4039 1.1835 27.584 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98659000 45970000 52689000 17760000 7973200 9786700 42878000 19818000 23060000 33292000 16048000 17244000 4728800 2130600 2598200 0 0 0 0 0 0 2984 2244 3111 15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529 16013;16014;16015;16016;16017 16015 5 ASITPGTILIILTGR SHGKKPFSQHVRKLRASITPGTILIILTGR ASITPGTILIILTGRHRGKRVVFLKQLASG R A S G R H 1 1 0 0 0 0 0 2 0 4 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1524.9239 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 142 156 RPL6 60S ribosomal protein L6 yes no 2 1.5217E-09 127.52 By MS/MS By MS/MS By MS/MS By matching 6 3 2 4 1.0561 1.008 28.853 15 Median 0.98921 0.98671 45.083 6 0 Median 1.0662 0.91342 2.7053 3 0 Median 1.0385 1.0563 6.6167 2 0 Median NaN NaN NaN 0 0 Median 1.1018 1.1583 9.9148 4 0 Median NaN NaN NaN 0 0 Median 77867000 37972000 39895000 24914000 12336000 12577000 38724000 18745000 19979000 5491700 2658800 2832900 0 0 0 8737400 4231300 4506000 0 0 0 2985 2703 3112 15530;15531;15532;15533;15534;15535;15536;15537;15538;15539;15540;15541;15542;15543;15544 16018;16019;16020;16021;16022;16023;16024;16025;16026;16027 16019 10 ASIWVGHR ______________________________ ______________________________ M A S H R G 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 1 0 1 0 0 8 0 924.49298 P12429;D6RFG5;D6RAZ8;D6RCA8 P12429 2 9 ANXA3 Annexin A3;Annexin yes no 2 0.0018983 92.467 By MS/MS 2 1.2248 1.1447 NaN 1 Median 1.2248 1.1447 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37146000 21213000 15933000 37146000 21213000 15933000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2986 1981 3113 15545;15546 16028;16029 16029 2 ASKEMFEDTVEER ______________________________ ______________________________ M A S E R V 1 1 0 1 0 0 4 0 0 0 0 1 1 1 0 1 1 0 0 1 0 0 13 1 1569.6981 Q16576;E9PC52 Q16576 2 14 RBBP7 Histone-binding protein RBBP7 yes no 2 0.00012806 79.82 By matching By MS/MS 1 1 1.2182 1.1994 27.86 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4443 1.4605 NaN 1 0 Median 1.0275 0.98492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8303400 3727300 4576000 0 0 0 0 0 0 2930200 1262200 1668100 5373100 2465200 2907900 0 0 0 0 0 0 2987 2990 3114 15547;15548 16030 16030 1641 1 ASKPGWWLLDTEVGEIQR VWPLLPGSFKTLEMKASKPGWWLLDTEVGE PGWWLLDTEVGEIQRAGMQTPFLIVDRECK K A S Q R A 1 1 0 1 0 1 2 2 0 1 2 1 0 0 1 1 1 2 0 1 0 0 18 1 2084.0691 CON__Q28107 CON__Q28107 1863 1880 yes yes 3 0.010335 32.926 By MS/MS 1 0.49751 0.50369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49751 0.50369 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1472200 1296100 176070 0 0 0 0 0 0 1472200 1296100 176070 0 0 0 0 0 0 0 0 0 + 2988 772 3115 15549 16031 16031 1 ASKPLPPAPAPDEYLVSPITGEK PTPDQVIVRKDYDPKASKPLPPAPAPDEYL PAPDEYLVSPITGEKIPASKMQEHMRIGLL K A S E K I 3 0 0 1 0 0 2 1 0 1 2 2 0 0 6 2 1 0 1 1 0 0 23 1 2376.2577 Q15459;H7C1L2 Q15459 397 419 SF3A1 Splicing factor 3A subunit 1 yes no 3 1.736E-08 63.573 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1 0.38433 0.40278 27.364 8 Median NaN NaN NaN 0 0 Median 0.38393 0.36035 NaN 1 0 Median 0.43162 0.52651 46.67 3 1 Plateau 0.47477 0.45799 4.7799 2 0 Median 0.34592 0.38701 NaN 1 0 Median 0.38473 0.34844 NaN 1 0 Median 144360000 99242000 45122000 0 0 0 1174900 811900 363040 114280000 77220000 37060000 3617000 2413300 1203700 24546000 18315000 6231300 745360 481290 264060 2989 2954 3116 15550;15551;15552;15553;15554;15555;15556;15557 16032;16033;16034;16035;16036;16037;16038 16032 7 ASKPLPPAPAPDEYLVSPITGEKIPASK PTPDQVIVRKDYDPKASKPLPPAPAPDEYL YLVSPITGEKIPASKMQEHMRIGLLDPRWL K A S S K M 4 0 0 1 0 0 2 1 0 2 2 3 0 0 7 3 1 0 1 1 0 0 28 2 2872.5586 Q15459;H7C1L2 Q15459 397 424 SF3A1 Splicing factor 3A subunit 1 yes no 4 0.016883 15.046 By MS/MS 1 0.28393 0.31654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28393 0.31654 NaN 1 0 Median NaN NaN NaN 0 0 Median 7174500 5509200 1665300 0 0 0 0 0 0 0 0 0 0 0 0 7174500 5509200 1665300 0 0 0 2990 2954 3117 15558 16039 16039 1 ASLACGPMVK NYMSNPSYNYEIVNRASLACGPMVKWAIAQ EIVNRASLACGPMVKWAIAQLNYADMLKRV R A S V K W 2 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 10 0 1032.5096 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3385 3394 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.015167 55.549 By MS/MS 1 1.0208 0.89544 NaN 1 Median NaN NaN NaN 0 0 Median 1.0208 0.89544 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7354000 3520300 3833700 0 0 0 7354000 3520300 3833700 0 0 0 0 0 0 0 0 0 0 0 0 2991 2865 3118 15559 16040 16040 1 ASLAETDKITLEVAK QEEEDLAEIVQLVGKASLAETDKITLEVAK ASLAETDKITLEVAKLIKDDFLQQNGYTPY K A S A K L 3 0 0 1 0 0 2 0 0 1 2 2 0 0 0 1 2 0 0 1 0 0 15 1 1587.872 P38606 P38606 499 513 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2;3 1.9047E-09 163.99 By MS/MS By matching By MS/MS 2 1 1 1.0758 1.0877 13.803 4 Median 1.0126 0.94829 11.244 2 0 Median 1.2238 1.1522 NaN 1 0 Median 1.0548 1.1876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37060000 17406000 19654000 31124000 14906000 16218000 1004700 375990 628750 4931500 2124200 2807300 0 0 0 0 0 0 0 0 0 2992 2276 3119 15560;15561;15562;15563 16041;16042;16043;16044;16045 16042 5 ASLASLPPLHVAK QLQHENSILKGAQMKASLASLPPLHVAKLS MKASLASLPPLHVAKLSHEGPGSELPAGAL K A S A K L 3 0 0 0 0 0 0 0 1 0 3 1 0 0 2 2 0 0 0 1 0 0 13 0 1302.766 E7EX90;Q14203;E7EWF7 E7EX90 1099 1111 DCTN1 Dynactin subunit 1 yes no 2;3 0.00026294 61.48 By MS/MS By matching By matching By matching By matching By matching 4 2 2 2 2 2 0.87783 0.77046 16.946 14 Median 0.77523 0.72431 3.1488 4 0 Linear 0.88266 0.77247 4.4819 2 0 Median 0.65774 0.71298 4.8228 2 0 Median 0.99365 0.89308 14.554 2 0 Median 1.0672 1.1257 2.1402 2 0 Median 1.0001 0.86757 14.556 2 0 Median 47149000 25326000 21823000 28869000 15419000 13451000 4800800 2501600 2299300 8562200 5118800 3443300 569520 251140 318380 3998800 1869000 2129900 348030 166700 181330 2993 906 3120 15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577 16046;16047;16048 16047 3 ASLDLMIR MYILSRDRLNMDLDRASLDLMIRLLELEQD LNMDLDRASLDLMIRLLELEQDASSAKLLN R A S I R L 1 1 0 1 0 0 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 8 0 917.50044 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 739 746 WAPAL Wings apart-like protein homolog yes no 2 0.0035475 89.55 By matching By MS/MS By matching By matching 1 2 2 3 1.2625 1.1307 21.884 8 Median NaN NaN NaN 0 0 Median 1.244 1.094 NaN 1 0 Median 1.0452 1.1786 2.64 2 0 Median 1.492 1.2615 18.712 2 0 Median NaN NaN NaN 0 0 Median 1.2814 1.0808 36.887 3 0 Median 9521900 4370100 5151800 0 0 0 249630 121070 128560 7179300 3436000 3743400 505100 179900 325210 0 0 0 1587900 633150 954710 2994 3249 3121 15578;15579;15580;15581;15582;15583;15584;15585 16049;16050 16049 2 ASLEAAIADAEQR ISRLQAEIEGLKGQRASLEAAIADAEQRGE QRASLEAAIADAEQRGELAIKDANAKLSEL R A S Q R G 5 1 0 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1343.6681 P05787;CON__P05787;CON__H-INV:HIT000292931 P05787 329 341 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.4963E-22 201.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 9 8 10 9 1.2619 1.1482 25.673 46 Median 1.5753 1.6005 44.25 5 2 Median 1.6013 1.3968 18.535 5 0 Median 1.1804 1.1509 16.313 9 3 Median 1.239 1.0727 21.76 8 0 Median 1.341 1.3773 16.286 10 1 Median 1.1378 0.95497 9.245 9 0 Median 1408900000 607890000 800990000 74897000 32115000 42782000 179080000 66486000 112590000 807420000 358230000 449190000 59402000 27079000 32323000 202790000 84918000 117870000 85295000 39064000 46231000 + 2995 750 3122 15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631 16051;16052;16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078;16079;16080;16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100 16056 50 ASLEAAIADAEQRGELAIK ISRLQAEIEGLKGQRASLEAAIADAEQRGE AAIADAEQRGELAIKDANAKLSELEAALQR R A S I K D 6 1 0 1 0 1 3 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 19 1 1955.0324 P05787;CON__P05787;CON__H-INV:HIT000292931 P05787 329 347 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.1106E-07 84.173 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 5 6 4 1.2836 1.2859 30.893 24 Median 1.5755 1.6363 46.615 4 0 Median 1.5809 1.4602 26.639 2 0 Median 1.3333 1.5012 14.785 3 0 Median 1.5047 1.3133 18.607 5 0 Median 1.1612 1.2859 27.497 6 0 Median 1.1085 0.98603 13.412 4 0 Median 300090000 130580000 169500000 17759000 8034600 9724000 9737500 3890100 5847400 32021000 13548000 18473000 90104000 36577000 53526000 92411000 41190000 51220000 58056000 27343000 30713000 + 2996 750 3123 15632;15633;15634;15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655 16101;16102;16103;16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114 16108 14 ASLEAAIADAEQRGELAIKDANAK ISRLQAEIEGLKGQRASLEAAIADAEQRGE AEQRGELAIKDANAKLSELEAALQRAKQDM R A S A K L 8 1 1 2 0 1 3 1 0 2 2 2 0 0 0 1 0 0 0 0 0 0 24 2 2454.2714 P05787;CON__P05787;CON__H-INV:HIT000292931 P05787 329 352 KRT8 Keratin, type II cytoskeletal 8 yes no 3;4 1.5767E-38 162.65 By matching By MS/MS By MS/MS 1 3 2 1.2931 1.4624 28.133 6 Median 1.3544 1.5134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3536 1.5484 7.4193 3 0 Median 0.96049 0.8947 6.8877 2 0 Median 277470000 123480000 153990000 3962500 1443300 2519300 0 0 0 0 0 0 0 0 0 145750000 59913000 85834000 127760000 62125000 65637000 + 2997 750 3124 15656;15657;15658;15659;15660;15661 16115;16116;16117;16118 16118 4 ASLEEPPDGPSAGQATGPGEGR DAGGPRPESPVPAGRASLEEPPDGPSAGQA DGPSAGQATGPGEGRRSTESEVYDDGTNTF R A S G R R 3 1 0 1 0 1 3 5 0 0 1 0 0 0 4 2 1 0 0 0 0 0 22 0 2078.9505 Q9BVG9;E9PS47;E9PLE4 Q9BVG9 23 44 PTDSS2 Phosphatidylserine synthase 2 yes no 2 6.8745E-33 120.66 By MS/MS 1 0.61532 0.52342 NaN 1 Median NaN NaN NaN 0 0 Median 0.61532 0.52342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2542300 1701400 840910 0 0 0 2542300 1701400 840910 0 0 0 0 0 0 0 0 0 0 0 0 2998 3853 3125 15662 16119 16119 1 ASLEGNLAETENR MQALEIELQSQLSMKASLEGNLAETENRYC MKASLEGNLAETENRYCVQLSQIQGLIGSV K A S N R Y 2 1 2 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1402.6688 CON__Q04695;Q04695;F5GWP8 CON__Q04695 322 334 KRT17 Keratin, type I cytoskeletal 17 yes no 2 2.1659E-31 214.81 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1 5 0.74865 0.64255 42.873 13 Median 1.2862 1.2499 NaN 1 0 Median 1.042 0.88803 14.98 2 0 Median 0.5662 0.62466 49.532 3 1 Median 0.74865 0.64255 NaN 1 0 Median 1.4113 1.405 NaN 1 0 Median 0.72693 0.58835 31.072 5 3 Median 199930000 97804000 102130000 6574100 2964200 3609800 12535000 6023600 6511200 68224000 28247000 39976000 60710000 34349000 26361000 19730000 7623300 12107000 32162000 18596000 13566000 + 2999 768 3126 15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675 16120;16121;16122;16123;16124;16125;16126;16127;16128;16129;16130;16131;16132;16133;16134;16135;16136;16137;16138 16133 19 ASLENSLEETK MQNLEIELQSQLSMKASLENSLEETKGRYC LSMKASLENSLEETKGRYCMQLAQIQEMIG K A S T K G 1 0 1 0 0 0 3 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1219.5932 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;P02533;CON__P02533 P02533 353 363 KRT16;KRT14 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2 0.00014781 109.66 By MS/MS By MS/MS By MS/MS By MS/MS 2 6 3 1 0.14917 0.12548 100 11 Median NaN NaN NaN 0 0 Median 0.1658 0.14818 9.1626 2 2 Median NaN NaN NaN 0 0 Median 0.10809 0.091772 114.47 6 6 Median 0.21123 0.2135 21.784 2 2 Median 0.030646 0.024973 NaN 1 1 Median 46867000 41036000 5831300 0 0 0 17304000 14769000 2535100 0 0 0 15829000 14100000 1728800 9287200 7836500 1450700 4447300 4330700 116630 + 3000 739;754 3127 15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687 16139;16140;16141;16142;16143;16144;16145;16146;16147;16148;16149;16150 16139 12 ASLENSLEETKGR MQNLEIELQSQLSMKASLENSLEETKGRYC MKASLENSLEETKGRYCMQLAQIQEMIGSV K A S G R Y 1 1 1 0 0 0 3 1 0 0 2 1 0 0 0 2 1 0 0 0 0 0 13 1 1432.7158 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6;P02533;CON__P02533 P02533 353 365 KRT16;KRT14 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2;3 7.4378E-23 160.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 5 3 3 0.18457 0.1963 85.463 10 Median 0.17686 0.18052 NaN 1 1 Median 0.78733 0.7301 NaN 1 1 Median 0.249 0.28552 26.276 2 2 Median 0.24981 0.22833 93.958 2 2 Median 0.15821 0.17712 26.391 2 2 Median 0.063126 0.052823 23.641 2 2 Median 58895000 52684000 6210800 8383800 7974300 409540 9848400 5871400 3976900 11404000 10770000 633380 7849200 7402100 447120 16615000 16049000 566030 4794600 4616800 177830 + 3001 739;754 3128 15688;15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702;15703;15704;15705 16151;16152;16153;16154;16155;16156;16157;16158;16159;16160;16161;16162;16163;16164;16165;16166;16167;16168 16154 18 ASLENSLR VQSLEIDLDSMRNLKASLENSLREVEARYA DSMRNLKASLENSLREVEARYALQMEQLNG K A S L R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 888.46649 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 318 325 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.0022721 139.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 3 1.3853 1.1853 15.691 14 Median 1.326 1.2861 22.695 2 0 Median 1.5536 1.3276 14.603 2 0 Median 1.222 1.1734 13.02 3 0 Median 1.3471 1.1488 17.073 2 0 Median 1.5522 1.5491 9.5104 2 0 Median 1.3604 1.0976 3.9783 3 0 Median 554030000 237300000 316730000 28840000 12258000 16582000 61736000 23712000 38024000 141720000 63363000 78358000 132340000 59473000 72862000 70140000 27861000 42279000 119260000 50632000 68627000 3002 1869 3129 15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719 16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194 16177 26 ASLENSLREVEAR VQSLEIDLDSMRNLKASLENSLREVEARYA LKASLENSLREVEARYALQMEQLNGILLHL K A S A R Y 2 2 1 0 0 0 3 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 13 1 1472.7583 P05783;F8VZY9 P05783 318 330 KRT18 Keratin, type I cytoskeletal 18 yes no 3 1.2085E-05 90.926 By matching By MS/MS 2 1 1.5041 1.6344 45.684 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5209 1.3444 62.607 2 0 Median 1.5041 1.6344 NaN 1 0 Median NaN NaN NaN 0 0 Median 19626000 7638300 11988000 0 0 0 0 0 0 0 0 0 2329000 619370 1709600 17297000 7018900 10278000 0 0 0 3003 1869 3130 15720;15721;15722 16195;16196 16195 2 ASLENVHPPIAPPPTEIPER HINHRHMRAGKPVTRASLENVHPPIAPPPT VHPPIAPPPTEIPERFIMPPDKHHMSHIPP R A S E R F 2 1 1 0 0 0 3 0 1 2 1 0 0 0 6 1 1 0 0 1 0 0 20 0 2163.1324 C9J2P9;Q75N03 C9J2P9 150 169 CBLL1 E3 ubiquitin-protein ligase Hakai yes no 3 7.3686E-16 90.968 By MS/MS By MS/MS 1 1 0.30647 0.28085 8.6397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29833 0.29854 NaN 1 1 Median 0.31484 0.2642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12117000 9035700 3081300 0 0 0 0 0 0 11391000 8541400 2849400 726240 494370 231870 0 0 0 0 0 0 3004 670 3131 15723;15724 16197;16198;16199 16197 3 ASLESWWQNPVPGLR VDQRARRAEILSEMRASLESWWQNPVPGLR ASLESWWQNPVPGLRLTFPEQSVPGALQFR R A S L R L 1 1 1 0 0 1 1 1 0 0 2 0 0 0 2 2 0 2 0 1 0 0 15 0 1738.8791 Q9Y6K5;F8VWK9;F8VS35 Q9Y6K5 103 117 OAS3 2-5-oligoadenylate synthase 3 yes no 2 0.0066681 33.866 By MS/MS By matching By matching By matching 1 1 1 1 0.83456 0.75149 8.9955 4 Median 0.88837 0.88963 NaN 1 0 Median 0.83019 0.73903 NaN 1 0 Median 0.71561 0.76417 NaN 1 0 Median 0.83894 0.73426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2858200 1690500 1167700 1377200 765580 611650 110420 60334 50085 1099800 722050 377780 270700 142560 128130 0 0 0 0 0 0 3005 4495 3132 15725;15726;15727;15728 16200 16200 1 ASLGLADHR RLDWFRLQAYTSVSKASLGLADHRELGKMM YTSVSKASLGLADHRELGKMMNTIIFHTKM K A S H R E 2 1 0 1 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 938.49338 Q9Y2A7 Q9Y2A7 502 510 NCKAP1 Nck-associated protein 1 yes yes 2 0.0030194 67.993 By MS/MS By matching 1 1 1.2493 1.0649 27.741 2 Median NaN NaN NaN 0 0 Median 1.0286 0.87524 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5175 1.2957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4414900 1967400 2447400 0 0 0 3516200 1601200 1915000 0 0 0 898700 366260 532440 0 0 0 0 0 0 3006 4383 3133 15729;15730 16201;16202 16201 2 ASLGSLEGEAEAEASSPK EASISGSKGDLKSSKASLGSLEGEAEAEAS GSLEGEAEAEASSPKGKFSLFKSKKPRHRS K A S P K G 4 0 0 0 0 0 4 2 0 0 2 1 0 0 1 4 0 0 0 0 0 0 18 0 1731.8163 Q09666 Q09666 5748 5765 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 9.836E-14 106.13 By MS/MS By MS/MS By MS/MS 2 1 2 1.0089 1.0007 7.466 5 Median 1.0188 1.0219 2.9713 2 2 Median NaN NaN NaN 0 0 Median 0.97307 1.041 NaN 1 0 Median 1.0265 0.90753 4.9814 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47277000 24881000 22396000 35908000 19135000 16774000 0 0 0 9461100 4847200 4613900 1907900 899370 1008500 0 0 0 0 0 0 3007 2749 3134 15731;15732;15733;15734;15735 16203;16204;16205;16206;16207;16208 16204 6 ASLLDDYQLPEILR RVQPGHCYHLYNGLRASLLDDYQLPEILRT RASLLDDYQLPEILRTPLEELCLQIKILRL R A S L R T 1 1 0 2 0 1 1 0 0 1 4 0 0 0 1 1 0 0 1 0 0 0 14 0 1644.8723 Q9H2U1;E7EWK3;H7C5F5 Q9H2U1 620 633 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.00085939 57.836 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.83102 0.87014 27.709 5 Median 0.86148 0.87014 NaN 1 0 Median 0.82895 0.72042 NaN 1 0 Median 0.78508 0.83759 52.925 2 0 Median NaN NaN NaN 0 0 Median 0.83102 0.88807 NaN 1 0 Median NaN NaN NaN 0 0 Median 5920600 3047100 2873400 1014700 495610 519080 2081400 1130300 951110 1541100 731700 809440 0 0 0 1283300 689510 593820 0 0 0 3008 902 3135 15736;15737;15738;15739;15740 16209;16210;16211;16212;16213;16214;16215 16215 7 ASLLDPVPEVR KDLAPYLPSVTPGLKASLLDPVPEVRTVSA PGLKASLLDPVPEVRTVSAKALGAMVKGMG K A S V R T 1 1 0 1 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1194.6608 Q92616 Q92616 1664 1674 GCN1L1 Translational activator GCN1 yes yes 2 0.0023898 53.756 By MS/MS By MS/MS By matching 1 1 1 0.82648 0.85115 9.7505 3 Median 0.80636 0.75686 NaN 1 0 Median 1.0001 0.85115 NaN 1 0 Median 0.82648 0.91848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18850000 10232000 8618000 12626000 7143200 5483200 3588300 1546500 2041800 2635600 1542500 1093000 0 0 0 0 0 0 0 0 0 3009 3544 3136 15741;15742;15743 16216;16217 16216 2 ASLLKVDQEVK ______________________________ ______________________________ M A S V K L 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 2 0 0 11 1 1228.7027 K9J957;P61289;K7ESG5;A0A087WTV2;K7ENH2;B7Z8D3;K7EJF8 K9J957 2 12 PSME3 Proteasome activator complex subunit 3 yes no 2 9.2135E-05 105.4 By MS/MS By matching 1 1 1.0974 1.0371 5.2869 2 Median 1.1068 1.0766 NaN 1 0 Median 1.088 0.99905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11001000 4729700 6271000 10402000 4429800 5971900 599000 299890 299110 0 0 0 0 0 0 0 0 0 0 0 0 3010 1403 3137 15744;15745 16218;16219 16218 2 ASLLQNESTNEQLQIHYK LEDDDPVQAEAYINRASLLQNESTNEQLQI LQNESTNEQLQIHYKVCYARVLDYRRKFIE R A S Y K V 1 0 2 0 0 3 2 0 1 1 3 1 0 0 0 2 1 0 1 0 0 0 18 0 2115.0596 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 171 188 COPS4 COP9 signalosome complex subunit 4 yes no 3 1.5673E-11 101.15 By matching By MS/MS By matching By matching 2 1 1 1 1.2162 1.2035 30.763 5 Median 0.82164 0.76014 13.236 2 0 Median NaN NaN NaN 0 0 Median 1.4028 1.4468 NaN 1 0 Median 1.4841 1.2522 NaN 1 0 Median 1.2162 1.2035 NaN 1 0 Median NaN NaN NaN 0 0 Median 107720000 54403000 53319000 59270000 34581000 24689000 0 0 0 45033000 18476000 26557000 1254600 604860 649790 2164100 741220 1422900 0 0 0 3011 813 3138 15746;15747;15748;15749;15750 16220;16221 16221 2 ASLLTDEEDVDMALDQR ASSLGINPHVLQIMKASLLTDEEDVDMALD LLTDEEDVDMALDQRFSRLPSKADTSQEIC K A S Q R F 2 1 0 4 0 1 2 0 0 0 3 0 1 0 0 1 1 0 0 1 0 0 17 0 1919.8782 P52948;A0A3B3ITD8;H7C3P6 P52948 996 1012 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0020197 36.284 By matching By MS/MS 1 1 0.87629 0.91286 27.495 2 Median 0.74417 0.75156 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0319 1.1088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3466500 1764300 1702300 423800 243460 180340 0 0 0 3042700 1520800 1521900 0 0 0 0 0 0 0 0 0 3012 2462 3139 15751;15752 16222;16223 16223 2 ASLMNDDFEK MSEAERVSELHLEVKASLMNDDFEKIKNWQ HLEVKASLMNDDFEKIKNWQKEAFHKQMMG K A S E K I 1 0 1 2 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 10 0 1168.507 A0A0U1RR22;Q9UNF0;B0QYG7;B0QYG8 A0A0U1RR22 102 111 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.00077271 71.451 By MS/MS By matching By matching By MS/MS 1 1 1 2 1.1291 1.0754 18.796 5 Median 1.1291 1.0754 NaN 1 0 Median 1.1147 0.96056 NaN 1 0 Median 1.0678 1.0722 NaN 1 0 Median 1.6771 1.4216 10.918 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17341000 7828200 9512900 6617600 3104500 3513100 2716300 1252200 1464100 5002000 2200800 2801200 3005200 1270700 1734500 0 0 0 0 0 0 3013 307 3140 15753;15754;15755;15756;15757 16224;16225;16226 16226 3 ASLNGADIYSGCCTLK AMVEFDSVQSAQRAKASLNGADIYSGCCTL SLNGADIYSGCCTLKIEYAKPTRLNVFKND K A S L K I 2 0 1 1 2 0 0 2 0 1 2 1 0 0 0 2 1 0 1 0 0 0 16 0 1728.7811 A0A3B3ITJ4;M0QXS5;M0R1W6;B4DVF8;P14866 P14866 249 264 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 3.0901E-10 107.53 By MS/MS 1 0.92987 0.88927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92987 0.88927 NaN 1 0 Median NaN NaN NaN 0 0 Median 36941000 18217000 18725000 0 0 0 0 0 0 0 0 0 0 0 0 36941000 18217000 18725000 0 0 0 3014 2011;436 3141 15758 16227;16228 16227 2 ASLPTLGFTHFQPAQLTTVGK LARVISRLADFAKERASLPTLGFTHFQPAQ GFTHFQPAQLTTVGKRCCLWIQDLCMDLQN R A S G K R 2 0 0 0 0 2 0 2 1 0 3 1 0 2 2 1 4 0 0 1 0 0 21 0 2213.1845 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8 A0A1B0GWJ0 150 170 ADSL Adenylosuccinate lyase yes no 3 1.6586E-06 41.257 By MS/MS By MS/MS By matching 1 1 1 1.1813 1.0286 268.88 3 Median 1.1021 1.0286 NaN 1 0 Median 1.1813 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101.51 107.16 NaN 1 0 Median NaN NaN NaN 0 0 Median 20349000 6885400 13464000 8697900 4958400 3739600 4309800 1851800 2457900 0 0 0 0 0 0 7341700 75181 7266500 0 0 0 3015 200 3142 15759;15760;15761 16229;16230;16231;16232 16232 4 ASLPYSQISGLNALQLR VLGLPLWWKTTETYRASLPYSQISGLNALQ LPYSQISGLNALQLRLMVPVTVVFTRESVP R A S L R L 2 1 1 0 0 2 0 1 0 1 4 0 0 0 1 3 0 0 1 0 0 0 17 0 1829.9999 Q96S52 Q96S52 44 60 PIGS GPI transamidase component PIG-S yes yes 2 0.0058571 28.806 By MS/MS By matching 1 1 1.243 1.078 18.005 2 Median NaN NaN NaN 0 0 Median 1.0995 0.94913 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4052 1.2244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1690700 816500 874180 0 0 0 1586300 749620 836680 0 0 0 104380 66883 37499 0 0 0 0 0 0 3016 3729 3143 15762;15763 16233 16233 1 ASLQLPMEK EVQGPSITVEFSDCKASLQLPMEKAIETAL EFSDCKASLQLPMEKAIETALDCLKSANTE K A S E K A 1 0 0 0 0 1 1 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0 9 0 1015.5372 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 932 940 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0010057 92.439 By MS/MS 1 0.97146 1.0424 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97146 1.0424 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6771600 3232100 3539500 0 0 0 0 0 0 6771600 3232100 3539500 0 0 0 0 0 0 0 0 0 3017 991 3144 15764 16234 16234 1 ASLSLAPVNIFK ______________________________ ______________________________ M A S F K A 2 0 1 0 0 0 0 0 0 1 2 1 0 1 1 2 0 0 0 1 0 0 12 0 1258.7285 P78371;F5GWF6;F8VQ14 P78371 2 13 CCT2 T-complex protein 1 subunit beta yes no 2 0.0010826 57.598 By matching By MS/MS By matching By MS/MS By matching 3 3 3 1 3 0.99863 0.88324 20.137 13 Median 1.0827 1.0246 8.9145 3 0 Median 0.99863 0.84403 6.8772 3 0 Median 1.3548 1.4545 21.367 3 0 Plateau 1.0261 0.88324 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89892 0.73779 11.911 3 0 Median 40729000 19663000 21066000 3848200 1824800 2023400 34447000 16625000 17823000 351840 166250 185590 1431900 689110 742750 0 0 0 649710 357920 291800 3018 2644 3145 15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777 16235;16236;16237 16236 3 ASLSLIEK KIEALQNHENESVYKASLSLIEKYFSVEEE ENESVYKASLSLIEKYFSVEEEEDQNVVPE K A S E K Y 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 0 859.50148 P52292 P52292 487 494 KPNA2 Importin subunit alpha-1 yes yes 2 0.0063783 71.501 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 3 1.3062 1.1202 18.532 9 Median 1.5917 1.5104 NaN 1 0 Median 1.1493 0.97988 NaN 1 1 Median 1.4237 1.3824 NaN 1 0 Median 1.4688 1.2438 14.801 2 0 Median 1.7026 1.6217 NaN 1 0 Median 1.2668 1.0478 2.2244 3 0 Median 45870000 18640000 27230000 7713100 3123700 4589400 3843100 1730600 2112500 13379000 5239900 8138700 7309200 3076300 4232900 6402200 2530300 3871900 7223800 2939500 4284300 3019 2448 3146 15778;15779;15780;15781;15782;15783;15784;15785;15786 16238;16239;16240;16241;16242;16243 16238 6 ASLSLWQAMEK QAERAAAGYPDPYSRASLSLWQAMEKGLVP PYSRASLSLWQAMEKGLVPQNEGLPLLQVQ R A S E K G 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 1 0 0 0 0 11 0 1262.6329 P58107;A0A075B730 P58107 1334 1344 EPPK1 Epiplakin yes no 2 0.00016036 91.584 By MS/MS By matching By matching 2 2 1 1.2678 1.1475 27.187 5 Median 1.2517 1.2289 9.6915 2 0 Median 1.3174 1.1586 6.597 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68915 0.66148 NaN 1 0 Median 39793000 17288000 22506000 32387000 14238000 18149000 7333300 2999800 4333500 0 0 0 0 0 0 0 0 0 72909 50168 22741 3020 2520 3147 15787;15788;15789;15790;15791 16244;16245;16246;16247 16244 4 ASLSYEEGHPSHSETDLLQR CSSGSCSSGSSPSLKASLSYEEGHPSHSET EEGHPSHSETDLLQRQSFAASHQLPGYAPT K A S Q R Q 1 1 0 1 0 1 3 1 2 0 3 0 0 0 1 4 1 0 1 0 0 0 20 0 2255.0455 A0A3B3IRW6;A0A3B3ISY4 A0A3B3IRW6 69 88 yes no 3 0.0023746 36.744 By MS/MS 1 0.36946 0.40267 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36946 0.40267 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14293000 10306000 3986800 0 0 0 0 0 0 14293000 10306000 3986800 0 0 0 0 0 0 0 0 0 3021 418 3148 15792 16248 16248 1 ASLTYAEAQLR EILKTKFTKSVINSKASLTYAEAQLRIDSA INSKASLTYAEAQLRIDSANMNDDITTSLR K A S L R I 3 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1221.6354 Q9Y2L1;G3V1J5 Q9Y2L1 586 596 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.0002101 99.653 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2.0392 1.9548 40.921 5 Linear 2.0036 1.9304 NaN 1 0 Median 1.6008 1.348 NaN 1 0 Median 1.114 1.1829 NaN 1 1 Median 0.87531 0.74359 2.8762 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36589000 16099000 20490000 11412000 4180900 7230900 5829000 2441200 3387800 10370000 5005300 5364500 8978200 4471100 4507100 0 0 0 0 0 0 3022 4384 3149 15793;15794;15795;15796;15797 16249;16250;16251;16252 16249 4 ASLVALPEQTASEEETPPPLLTK SKSPSPPRLTEDRKKASLVALPEQTASEEE QTASEEETPPPLLTKEASSPPPHPQLHSEE K A S T K E 3 0 0 0 0 1 4 0 0 0 4 1 0 0 4 2 3 0 0 1 0 0 23 0 2420.2686 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 341 363 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2;3 6.9796E-08 45.784 By MS/MS By MS/MS 1 2 0.49226 0.51508 12.514 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37418 0.41516 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49205 0.51564 0.15299 2 0 Median NaN NaN NaN 0 0 Median 11591000 7712100 3878400 0 0 0 0 0 0 1458700 1153100 305600 0 0 0 10132000 6559000 3572800 0 0 0 3023 4560 3150 15798;15799;15800 16253;16254;16255 16254 3 ASLYNAVTIEDVQK NMLSLKGHRSVGGIRASLYNAVTIEDVQKL RASLYNAVTIEDVQKLAAFMKKFLEMHQL_ R A S Q K L 2 0 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 1 2 0 0 14 0 1549.7988 Q9Y617 Q9Y617 343 356 PSAT1 Phosphoserine aminotransferase yes yes 2 5.0729E-06 123.67 By MS/MS By matching By matching 1 1 2 1.2391 1.101 28.636 4 Median 1.128 1.0362 NaN 1 0 Median 1.3611 1.1699 NaN 1 0 Median 1.2402 1.2524 47.123 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59196000 26148000 33048000 48752000 21749000 27002000 3498200 1630600 1867600 6946200 2767500 4178700 0 0 0 0 0 0 0 0 0 3024 4476 3151 15801;15802;15803;15804 16256 16256 1 ASLYPCPETPQER DQLKNRVKKICEGFRASLYPCPETPQERKE FRASLYPCPETPQERKEMASGVNTRIDDLQ R A S E R K 1 1 0 0 1 1 2 0 0 0 1 0 0 0 3 1 1 0 1 0 0 0 13 0 1546.7086 Q93050;B7Z641;B7Z2A9;K7EPG4 Q93050 242 254 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.00058618 69.979 By MS/MS 1 0.65726 0.55204 NaN 1 Median NaN NaN NaN 0 0 Median 0.65726 0.55204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5445900 2954800 2491100 0 0 0 5445900 2954800 2491100 0 0 0 0 0 0 0 0 0 0 0 0 3025 3576 3152 15805 16257;16258 16257 2 ASMGTLAFDEYGRPFLIIK ______________________________ TLAFDEYGRPFLIIKDQDRKSRLMGLEALK M A S I K D 2 1 0 1 0 0 1 2 0 2 2 1 1 2 1 1 1 0 1 0 0 0 19 1 2128.1027 P48643;E7ENZ3;D6RIZ7 P48643 2 20 CCT5 T-complex protein 1 subunit epsilon yes no 2 1.7595E-13 104.87 By MS/MS By MS/MS By MS/MS 1 2 1 1.0437 0.99864 22.726 4 Median 1.0657 1.0694 NaN 1 0 Median 0.92716 0.84417 14.087 2 0 Median 1.1772 1.3107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20373000 9774900 10598000 9049300 4246000 4803400 9199900 4575500 4624500 2123700 953490 1170200 0 0 0 0 0 0 0 0 0 3026 2364 3153 15806;15807;15808;15809 16259;16260;16261;16262;16263;16264 16259 6 ASMHPVTAMLVGK DKSHDQAVRTYQEHKASMHPVTAMLVGKDL HKASMHPVTAMLVGKDLKVD__________ K A S G K D 2 0 0 0 0 0 0 1 1 0 1 1 2 0 1 1 1 0 0 2 0 0 13 0 1340.6945 P09960 P09960 594 606 LTA4H Leukotriene A-4 hydrolase yes yes 2;3 0.00071078 47.189 By MS/MS By MS/MS By matching 2 2 1 0.96711 0.87516 18.79 5 Median 0.76293 0.73698 29.434 2 0 Median 1.0928 0.92027 7.1067 2 0 Median 0.77301 0.81027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28311000 13364000 14946000 12932000 6771600 6160500 14608000 6152900 8454600 771110 439860 331250 0 0 0 0 0 0 0 0 0 3027 1924 3154 15810;15811;15812;15813;15814 16265;16266;16267;16268 16265 4 ASMQPIQIAEGTGITTR DEEMKTGDPQETLRRASMQPIQIAEGTGIT MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R A S T R Q 2 1 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 17 0 1772.9091 A0A087WY61;Q14980 Q14980 1968 1984 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 8.0508E-12 134.61 By matching By MS/MS By matching By MS/MS By matching 1 6 1 8 1 0.82523 0.85777 13.193 17 Median NaN NaN NaN 0 0 Median 0.82725 0.69462 NaN 1 0 Median 0.79235 0.86373 15.201 6 2 Median 1.0595 0.89136 NaN 1 0 Median 0.83514 0.84576 12.115 8 0 Median 0.95858 0.80213 NaN 1 0 Median 179030000 94778000 84249000 0 0 0 1790200 1000300 789900 105780000 56543000 49237000 306580 141430 165150 70479000 36766000 33713000 670910 327000 343910 3028 2905;77 3155;3156 15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831 16269;16270;16271;16272;16273;16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288;16289;16290 16269 29 22 ASMQQQQQLASAR ______________________________ IRASMQQQQQLASARNRRLAQQMENRPSVQ R A S A R N 3 1 0 0 0 5 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 13 0 1445.7045 X6R700;Q9Y3Y2;A0A087X1B7 X6R700 14 26 CHTOP Chromatin target of PRMT1 protein yes no 2 5.1709E-07 117.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 3 1.3465 1.2787 15.657 11 Median 1.3465 1.3034 NaN 1 0 Median 1.6539 1.4035 NaN 1 1 Median 1.2612 1.2221 2.9585 2 0 Median 1.908 1.5535 12.569 2 0 Median 1.147 1.1634 13.362 2 0 Median 1.4909 1.2136 20.031 3 0 Median 29631000 12067000 17563000 1057900 484530 573330 932230 247510 684720 6543500 2597000 3946500 1851600 697470 1154200 6880300 3041900 3838400 12365000 4999000 7366200 3029 4435 3157;3158 15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842 16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303;16304;16305;16306 16294 1984 16 ASMTNLVK SRDPLLLAIIPKYLRASMTNLVKMGFPSKT IIPKYLRASMTNLVKMGFPSKTDSPSCEYS R A S V K M 1 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 0 0 8 0 862.45824 Q9HAV4;H0Y9I3 Q9HAV4 400 407 XPO5 Exportin-5 yes no 2 0.0072183 67.981 By MS/MS 1 1.3158 1.1346 NaN 1 Median NaN NaN NaN 0 0 Median 1.3158 1.1346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3742400 1644900 2097400 0 0 0 3742400 1644900 2097400 0 0 0 0 0 0 0 0 0 0 0 0 3030 4012 3159 15843 16307 16307 1 ASNGDAWVEAHGK EVQKDIKNVPFKIVRASNGDAWVEAHGKLY VRASNGDAWVEAHGKLYSPSQIGAFVLMKM R A S G K L 3 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 1 0 0 13 0 1340.6109 P38646;A0A3B3ITI4;D6RJI2 P38646 147 159 HSPA9 Stress-70 protein, mitochondrial yes no 2;3 1.5405E-06 112.13 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.4729 1.3715 17.212 5 Median 1.2036 1.1369 NaN 1 0 Median 1.7719 1.4809 26.311 2 1 Median 1.2923 1.3715 NaN 1 0 Median 1.6752 1.4395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47386000 19267000 28119000 9229600 3990900 5238600 35271000 14185000 21086000 2309700 935160 1374500 575820 155520 420300 0 0 0 0 0 0 3031 2277 3160 15844;15845;15846;15847;15848 16308;16309;16310;16311;16312;16313 16313 6 ASNGNARPETVTNDDEEALDEETK AKTKAQLDEWKAKKKASNGNARPETVTNDD TVTNDDEEALDEETKRRDQMIKGAIEVLIR K A S T K R 3 1 3 3 0 0 5 1 0 0 1 1 0 0 1 1 3 0 0 1 0 0 24 1 2604.1423 P49756;E9PQU5 P49756 178 201 RBM25 RNA-binding protein 25 yes no 3 4.3505E-08 46.403 By matching By MS/MS 1 1 0.79289 0.82863 13.275 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80087 0.91018 NaN 1 0 Median 0.78499 0.75438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6062600 3400000 2662700 0 0 0 0 0 0 2770500 1465100 1305400 3292100 1934800 1357300 0 0 0 0 0 0 3032 2397 3161 15849;15850 16314 16314 1 ASNLENSTYDLYTIPK MSYNPAENAVLLCTRASNLENSTYDLYTIP SNLENSTYDLYTIPKDADSQNPDAPEGKRS R A S P K D 1 0 2 1 0 0 1 0 0 1 2 1 0 0 1 2 2 0 2 0 0 0 16 0 1827.8891 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 383 398 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00023645 49.423 By MS/MS By matching By matching 3 1 1 0.76017 0.73384 16.221 5 Median 0.85385 0.84921 11.914 3 0 Plateau 0.76017 0.66877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1354 0.98259 NaN 1 0 Median 52481000 27588000 24893000 50269000 26399000 23871000 1964300 1054900 909390 0 0 0 0 0 0 0 0 0 247860 134900 112960 3033 2473 3162 15851;15852;15853;15854;15855 16315;16316;16317;16318;16319 16319 5 ASNLLLNYK LEYIHEHEYVHGDIKASNLLLNYKNPDQVY VHGDIKASNLLLNYKNPDQVYLVDYGLAYR K A S Y K N 1 0 2 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 9 0 1034.576 Q99986;H0YJ50 Q99986 180 188 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 8.9949E-07 159.04 By MS/MS By MS/MS By matching 3 3 3 0.99323 0.91125 14.715 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99323 0.94691 9.7329 3 0 Plateau 1.0676 0.96417 15.778 3 0 Plateau NaN NaN NaN 0 0 Median 1.0918 0.91125 21.507 3 0 Median 138250000 66862000 71384000 0 0 0 0 0 0 80694000 39666000 41029000 52881000 24916000 27965000 0 0 0 4671100 2279900 2391300 3034 3775 3163 15856;15857;15858;15859;15860;15861;15862;15863;15864 16320;16321;16322;16323;16324;16325;16326;16327 16325 8 ASNLQDLVYK SICFLLGISNLSQVRASNLQDLVYKNGQAG LSQVRASNLQDLVYKNGQAGITKASVSITF R A S Y K N 1 0 1 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1149.603 O95347 O95347 59 68 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0025092 64.711 By MS/MS By matching By MS/MS 2 1 1 1.1591 1.1092 49.184 3 Median 1.1473 1.1092 NaN 1 1 Median 2.9505 2.4675 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1591 1.0072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20398000 9515300 10883000 13092000 6166300 6925300 448720 127310 321410 0 0 0 6857900 3221700 3636300 0 0 0 0 0 0 3035 1766 3164 15865;15866;15867;15868 16328;16329;16330;16331 16330 4 ASNNDLNVATNFLLQH MEMGFSRGDALEALRASNNDLNVATNFLLQ SNNDLNVATNFLLQH_______________ R A S Q H - 2 0 4 1 0 1 0 0 1 0 3 0 0 1 0 1 1 0 0 1 0 0 16 0 1769.8697 Q8NBM4 Q8NBM4 329 344 UBAC2 Ubiquitin-associated domain-containing protein 2 yes yes 2;3 1.7794E-07 86.313 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21905000 0 0 21905000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3036 3406 3165 15869;15870 16332;16333 16333 2 ASNTADTLFQEVLGR VEGSMTQKLENVLNRASNTADTLFQEVLGR ASNTADTLFQEVLGRKDKADSTRNALNVLQ R A S G R K 2 1 1 1 0 1 1 1 0 0 2 0 0 1 0 1 2 0 0 1 0 0 15 0 1620.8107 Q96KP1 Q96KP1 249 263 EXOC2 Exocyst complex component 2 yes yes 2 0.049451 23.236 By matching By MS/MS By matching 1 1 1 1.1958 1.1199 20.158 3 Plateau 1.1958 1.1931 NaN 1 0 Median 1.1407 1.0077 NaN 1 0 Median 0.7192 0.7986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3134100 1505000 1629100 1544000 729280 814760 1302200 599320 702880 287900 176400 111490 0 0 0 0 0 0 0 0 0 3037 3695 3166 15871;15872;15873 16334 16334 1 ASNVTNKTDPR ______________________________ ______________________________ M A S P R S 1 1 2 1 0 0 0 0 0 0 0 1 0 0 1 1 2 0 0 1 0 0 11 1 1201.6051 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;G3V4M8;G3V2H6 B2R5W2 2 12 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 6.811E-05 88.392 By MS/MS 6 0.74899 0.86139 11.897 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74899 0.86139 11.897 6 0 Median NaN NaN NaN 0 0 Median 83905000 42891000 41014000 0 0 0 0 0 0 0 0 0 0 0 0 83905000 42891000 41014000 0 0 0 3038 582 3167 15874;15875;15876;15877;15878;15879 16335;16336;16337;16338 16338 4 ASPAGTAGGPGAGAAAGGTGPLAAR SAPAALPSSTAAENKASPAGTAGGPGAGAA GAGAAAGGTGPLAARAGEPAERRGAAPVSA K A S A R A 9 1 0 0 0 0 0 8 0 0 1 0 0 0 3 1 2 0 0 0 0 0 25 0 1962.9872 Q12962 Q12962 43 67 TAF10 Transcription initiation factor TFIID subunit 10 yes yes 2 1.9203E-20 87.148 By matching By MS/MS By MS/MS 1 2 1 0.65038 0.6323 9.3798 4 Median 0.58726 0.55131 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65038 0.6323 0.208 2 0 Median 0.82769 0.69204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15268000 9338500 5929600 6166000 4117700 2048300 0 0 0 7734900 4480400 3254500 1367200 740440 626780 0 0 0 0 0 0 3039 2774 3168 15880;15881;15882;15883 16339;16340;16341;16342 16339 4 ASPAPGSGHPEGPGAHLDMNSLDR SGLKRNSERKTPEGRASPAPGSGHPEGPGA PEGPGAHLDMNSLDRAQAAKNKGNKYFKAG R A S D R A 3 1 1 2 0 0 1 4 2 0 2 0 1 0 4 3 0 0 0 0 0 0 24 0 2369.0819 O94826 O94826 90 113 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 3;4 1.1826E-12 60.991 By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 0.67911 0.69048 18.034 7 Median 0.54839 0.51803 0.076301 2 1 Median 0.71907 0.62227 17.83 2 0 Median 0.72436 0.7607 8.5804 2 0 Median 0.82597 0.69048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71509000 43873000 27636000 44423000 27989000 16434000 15237000 9188700 6048200 9186100 5133600 4052500 2662900 1561500 1101400 0 0 0 0 0 0 3040 1728 3169 15884;15885;15886;15887;15888;15889;15890 16343;16344;16345;16346;16347;16348;16349 16344 7 ASPDLVPMGEWTAR SVKQSAALCLLRLYKASPDLVPMGEWTARV KASPDLVPMGEWTARVVHLLNDQHMGVVTA K A S A R V 2 1 0 1 0 0 1 1 0 0 1 0 1 0 2 1 1 1 0 1 0 0 14 0 1528.7344 O95782 O95782 178 191 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.049944 24.291 By matching By matching By MS/MS By matching 1 1 1 2 0.9371 0.88699 9.7254 5 Median 1.0049 0.99304 NaN 1 0 Median 0.97956 0.88699 NaN 1 0 Median 0.82206 0.88323 NaN 1 0 Median 0.91855 0.82164 11.722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5877900 2877200 3000800 2062100 776810 1285300 402850 221350 181500 3022600 1663600 1359000 390400 215370 175030 0 0 0 0 0 0 3041 1793 3170 15891;15892;15893;15894;15895 16350 16350 1 ASPESQEPLIQLVQAFVR GVLPSPQGKSTSLSKASPESQEPLIQLVQA ESQEPLIQLVQAFVRHMQR___________ K A S V R H 2 1 0 0 0 3 2 0 0 1 2 0 0 1 2 2 0 0 0 2 0 0 18 0 2011.0738 Q5SRE5 Q5SRE5 1728 1745 NUP188 Nucleoporin NUP188 homolog yes yes 2;3 0.013176 21.873 By matching By MS/MS 1 3 0.69927 0.76454 4.0652 4 Median 0.81073 0.79999 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68596 0.76425 3.1214 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2795000 1625100 1169900 293000 157520 135470 0 0 0 2502000 1467600 1034400 0 0 0 0 0 0 0 0 0 3042 3074 3171 15896;15897;15898;15899 16351;16352;16353;16354 16354 4 ASPFLLQYIQEEIPDYR KEIQGFFNIPVDNLRASPFLLQYIQEEIPD PFLLQYIQEEIPDYRNAVIVAKSPASAKRA R A S Y R N 1 1 0 1 0 2 2 0 0 2 2 0 0 1 2 1 0 0 2 0 0 0 17 0 2081.047 O60256;E7EPA1;C9JJS3;C9K0K7;I3L0S1 O60256 165 181 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 6.1043E-07 86.772 By MS/MS By matching 1 1 0.8642 0.80969 6.6707 2 Median NaN NaN NaN 0 0 Median 0.89151 0.77239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83773 0.8488 NaN 1 0 Median NaN NaN NaN 0 0 Median 3983300 2040700 1942600 0 0 0 3857000 1976000 1881000 0 0 0 0 0 0 126390 64727 61667 0 0 0 3043 1607 3172 15900;15901 16355;16356 16356 2 ASPFLLQYIQEEIPNYR KEIQGFFSFPVDNLRASPFLLQYIQEEIPN PFLLQYIQEEIPNYRNAVIVAKSPDAAKRA R A S Y R N 1 1 1 0 0 2 2 0 0 2 2 0 0 1 2 1 0 0 2 0 0 0 17 0 2080.0629 B4DP31;Q14558;C9J168;C9JUN4 B4DP31 79 95 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 2 9.9419E-11 87.001 By MS/MS 1 0.92455 0.78884 NaN 1 Median NaN NaN NaN 0 0 Median 0.92455 0.78884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1488000 857210 630830 0 0 0 1488000 857210 630830 0 0 0 0 0 0 0 0 0 0 0 0 3044 600 3173 15902 16357 16357 1 ASPGHSPHYFAASSPTSPNALPPAR CTPRDLAVPAALTPRASPGHSPHYFAASSP AASSPTSPNALPPARKASPPSGLWSPAYAS R A S A R K 5 1 1 0 0 0 0 1 2 0 1 0 0 1 6 5 1 0 1 0 0 0 25 0 2516.2197 Q8TEM1 Q8TEM1 1847 1871 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3;4 2.8693E-30 113.73 By MS/MS By MS/MS By MS/MS 1 4 1 0.35241 0.37405 19.741 6 Median NaN NaN NaN 0 0 Median 0.48266 0.38637 NaN 1 0 Median 0.39105 0.41106 15.885 4 2 Linear 0.57018 0.50172 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113420000 78419000 34998000 0 0 0 18413000 8780500 9632800 93784000 68985000 24799000 1219200 653160 566010 0 0 0 0 0 0 3045 3477 3174 15903;15904;15905;15906;15907;15908 16358;16359;16360;16361;16362;16363;16364;16365 16361 8 ASPGHSPHYFAASSPTSPNALPPARK CTPRDLAVPAALTPRASPGHSPHYFAASSP ASSPTSPNALPPARKASPPSGLWSPAYASH R A S R K A 5 1 1 0 0 0 0 1 2 0 1 1 0 1 6 5 1 0 1 0 0 0 26 1 2644.3146 Q8TEM1 Q8TEM1 1847 1872 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 5 0.024203 11.632 By MS/MS 1 0.62442 0.7219 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62442 0.7219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2606700 1631800 974840 0 0 0 0 0 0 2606700 1631800 974840 0 0 0 0 0 0 0 0 0 3046 3477 3175 15909 16366 16366 1 ASPLLPANHVTMAK DLENGTCSHPLIPDKASPLLPANHVTMAKG KASPLLPANHVTMAKGTGLVHTAPAHGMED K A S A K G 3 0 1 0 0 0 0 0 1 0 2 1 1 0 2 1 1 0 0 1 0 0 14 0 1448.781 Q9NSE4 Q9NSE4 373 386 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2;3 0.0032184 33.89 By MS/MS By matching 2 1 0.82048 0.79489 32.365 3 Median 0.80006 0.77533 3.5233 2 0 Median 1.5857 1.3559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23298000 11890000 11408000 18395000 10235000 8159500 4903400 1655200 3248200 0 0 0 0 0 0 0 0 0 0 0 0 3047 4103 3176 15910;15911;15912 16367;16368;16369;16370 16367 4 ASPLTFTVQLSNK DMEPSLYRCSNIDCKASPLTFTVQLSNKLI CKASPLTFTVQLSNKLIMDIRRFIKKYYDG K A S N K L 1 0 1 0 0 1 0 0 0 0 2 1 0 1 1 2 2 0 0 1 0 0 13 0 1404.7613 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1316 1328 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.00042442 73.781 By MS/MS By matching 1 2 0.94051 0.87096 24.725 3 Median 0.90713 0.87096 NaN 1 0 Median 1.1692 1.0439 31.687 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8323300 4231300 4092000 5201800 2789900 2411900 3121500 1441400 1680100 0 0 0 0 0 0 0 0 0 0 0 0 3048 26 3177 15913;15914;15915 16371;16372 16371 2 ASPLTHSPPDEL LEGDPSPEEDEGIQKASPLTHSPPDEL___ IQKASPLTHSPPDEL_______________ K A S E L - 1 0 0 1 0 0 1 0 1 0 2 0 0 0 3 2 1 0 0 0 0 0 12 0 1262.6143 Q9BT09 Q9BT09 267 278 CNPY3 Protein canopy homolog 3 yes yes 2 0.00064859 91.853 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6633000 0 0 0 0 0 0 0 0 0 0 0 6633000 0 0 0 0 0 0 0 0 3049 3820 3178 15916 16373 16373 1 ASPLVAIGQTLAR ERTRFQELLASPAYRASPLVAIGQTLARQM YRASPLVAIGQTLARQMQLEDGGQL_____ R A S A R Q 3 1 0 0 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1295.7561 Q9NSI2 Q9NSI2 208 220 FAM207A Protein FAM207A yes yes 2 0.0010336 60.434 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 0.91554 0.87064 34.642 6 Median 0.67999 0.65991 NaN 1 0 Median 0.90063 0.76622 NaN 1 0 Median 0.9307 0.88829 NaN 1 0 Median 1.0469 0.85333 NaN 1 0 Median 0.89587 0.90127 NaN 1 0 Median 2.1209 1.798 NaN 1 0 Median 19983000 9673800 10310000 1335400 797420 537970 196480 121630 74848 3713300 1729200 1984100 238340 117380 120960 13156000 6631600 6524000 1344300 276550 1067800 3050 4104 3179 15917;15918;15919;15920;15921;15922 16374;16375;16376;16377 16376 4 ASPNTPPGRVDENGPELLPR MAQILQILTVQAQLRASPNTPPGRVDENGP PPGRVDENGPELLPRVAMLRLLTWVIGTGS R A S P R V 1 2 2 1 0 0 2 2 0 0 2 0 0 0 5 1 1 0 0 1 0 0 20 1 2115.0709 Q92616 Q92616 1018 1037 GCN1L1 Translational activator GCN1 yes yes 3 0.021637 15.725 By MS/MS 1 0.31387 0.33566 NaN 1 Median 0.31387 0.33566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6275100 4771600 1503500 6275100 4771600 1503500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3051 3544 3180 15923 16378 16378 1 ASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGR GAVGERTPRKKEPPRASPPGGLAEPPGSAG ATPMETGIAETPEGRRTSRRKRAKVEYREM R A S G R R 6 1 0 0 0 1 4 8 0 1 1 0 1 0 9 3 4 0 0 2 0 0 41 0 3794.8421 O60341;R4GMQ1 O60341 68 108 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.00088245 27.436 By MS/MS 1 0.21664 0.23243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21664 0.23243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2784400 2497200 287260 0 0 0 0 0 0 2784400 2497200 287260 0 0 0 0 0 0 0 0 0 3052 1613 3181 15924 16379 16379 1 ASPPSGLWSPAYASH ASSPTSPNALPPARKASPPSGLWSPAYASH ASPPSGLWSPAYASH_______________ K A S S H - 3 0 0 0 0 0 0 1 1 0 1 0 0 0 3 4 0 1 1 0 0 0 15 0 1526.7154 Q8TEM1 Q8TEM1 1873 1887 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00024468 66.19 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6296200 0 0 0 0 0 0 0 0 6296200 0 0 0 0 0 0 0 0 0 0 0 3053 3477 3182 15925 16380;16381 16381 2 ASPQAADLLEK LPQTPRKDFTQLFPRASPQAADLLEKMLEL LFPRASPQAADLLEKMLELDVDKRLTAAQA R A S E K M 3 0 0 1 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1141.5979 O15264 O15264 277 287 MAPK13 Mitogen-activated protein kinase 13 yes yes 2 0.0031943 50.292 By MS/MS By matching 1 1 0.81634 0.77754 24.446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60999 0.65411 NaN 1 0 Median 1.0925 0.92427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6324000 3734300 2589700 0 0 0 0 0 0 3751400 2452600 1298800 2572600 1281700 1290900 0 0 0 0 0 0 3054 1535 3183 15926;15927 16382;16383 16382 2 ASPQGGQIAIAMR ______________________________ ______________________________ M A S M R L 3 1 0 0 0 2 0 2 0 2 0 0 1 0 1 1 0 0 0 0 0 0 13 0 1298.6765 Q9BSM1 Q9BSM1 2 14 PCGF1 Polycomb group RING finger protein 1 yes yes 2 1.3415E-06 98.249 By MS/MS By MS/MS By matching 1 1 1 1.2019 1.185 17.538 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9533 0.91595 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2019 1.185 NaN 1 0 Median 1.5693 1.2804 NaN 1 0 Median 14418000 6801900 7616400 0 0 0 0 0 0 11334000 5611100 5723000 0 0 0 2660800 1034700 1626200 423370 156180 267200 3055 3819 3184 15928;15929;15930 16384;16385;16386;16387 16385 4 ASPSPQPSSQPLQIHR KKEESHSNDQSPQIRASPSPQPSSQPLQIH SPSPQPSSQPLQIHRQTPESKNATPTKSIK R A S H R Q 1 1 0 0 0 3 0 0 1 1 1 0 0 0 4 4 0 0 0 0 0 0 16 0 1728.8907 Q9HC35;B5MBZ0 Q9HC35 143 158 EML4 Echinoderm microtubule-associated protein-like 4 yes no 3 0.00024367 40.801 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 0.55594 0.5647 16.082 8 Median 0.5101 0.50449 10.512 2 0 Median 0.67696 0.56376 31.038 2 0 Median 0.54836 0.58681 NaN 1 0 Median 0.70689 0.60043 16.349 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32961000 19670000 13291000 9867100 6764100 3103000 13361000 7455100 5906000 2387000 1348500 1038500 7345600 4102500 3243100 0 0 0 0 0 0 3056 4024 3185 15931;15932;15933;15934;15935;15936;15937;15938 16388;16389;16390;16391;16392;16393;16394 16394 7 ASPVPSDPEKPGTPGEGMLSSDLDR EGKADTPGPEDGGVKASPVPSDPEKPGTPG PGTPGEGMLSSDLDRISTEELPKMESKDLQ K A S D R I 1 1 0 3 0 0 2 3 0 0 2 1 1 0 5 4 1 0 0 1 0 0 25 1 2538.1908 O14686 O14686 1853 1877 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 3.0396E-08 42.454 By MS/MS By MS/MS 1 1 0.55261 0.57384 4.1532 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48134 0.55723 NaN 1 0 Median 0.63443 0.59094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5653100 3626000 2027100 0 0 0 0 0 0 5069700 3271900 1797800 583450 354090 229360 0 0 0 0 0 0 3057 1490 3186 15939;15940 16395;16396;16397 16396 3 ASQEPSPKPGTEVIPAAPR MPLPEPSEQEGESVKASQEPSPKPGTEVIP PSPKPGTEVIPAAPRKPRKFSKLVLLTASK K A S P R K 3 1 0 0 0 1 2 1 0 1 0 1 0 0 5 2 1 0 0 1 0 0 19 1 1931.0112 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 16 34 FLYWCH2 FLYWCH family member 2 yes no 3 0.0031438 38.017 By MS/MS 1 0.46796 0.4887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46796 0.4887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10473000 8822500 1650200 0 0 0 0 0 0 10473000 8822500 1650200 0 0 0 0 0 0 0 0 0 3058 1280 3187 15941 16398;16399 16398 2 ASQGLLSSIENSESDSSEAKEEGSR SEKLVRGRTRYQTRRASQGLLSSIENSESD NSESDSSEAKEEGSRKKRSGKWKNKSNESV R A S S R K 2 1 1 1 0 1 5 2 0 1 2 1 0 0 0 8 0 0 0 0 0 0 25 1 2596.1736 Q5UIP0 Q5UIP0 1541 1565 RIF1 Telomere-associated protein RIF1 yes yes 3 1.0988E-09 50.498 By MS/MS 2 0.85315 1.0047 8.0983 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85315 1.0047 8.0983 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8061900 4530400 3531500 0 0 0 0 0 0 8061900 4530400 3531500 0 0 0 0 0 0 0 0 0 3059 3109 3188 15942;15943 16400 16400 1 ASQGSTLVHPFR INFLLGILYIATPNKASQGSTLVHPFRALG PNKASQGSTLVHPFRALGKNSELLVVSARE K A S F R A 1 1 0 0 0 1 0 1 1 0 1 0 0 1 1 2 1 0 0 1 0 0 12 0 1298.6731 P78316;E9PFK5 P78316 628 639 NOP14 Nucleolar protein 14 yes no 2;3 0.00020872 101.11 By MS/MS By matching 2 1 1.0498 1.0772 28.846 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1595 1.1956 14.759 2 1 Median 0.91598 0.75045 NaN 1 0 Median 15619000 7889800 7729200 0 0 0 0 0 0 0 0 0 0 0 0 14849000 7488300 7361100 769540 401420 368120 3060 2637 3189 15944;15945;15946 16401;16402 16402 2 ASQKPQPNFPSPEYMIFDHEFTK IEKLGFISKHELYSRASQKPQPNFPSPEYM FPSPEYMIFDHEFTKLVKELEGVITKAIYK R A S T K L 1 0 1 1 0 2 2 0 1 1 0 2 1 3 4 2 1 0 1 0 0 0 23 1 2737.2846 O60763 O60763 593 615 USO1 General vesicular transport factor p115 yes yes 4 0.066764 6.8749 By MS/MS 1 0.55377 0.58579 NaN 1 Median 0.55377 0.58579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1988300 1302600 685770 1988300 1302600 685770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3061 1630 3190 15947 16403 16403 1 ASQPDLVDTPTSSKPQPK KESMTNEKTTKVSYRASQPDLVDTPTSSKP PDLVDTPTSSKPQPKRSLRKADTEEEFLAF R A S P K R 1 0 0 2 0 2 0 0 0 0 1 2 0 0 4 3 2 0 0 1 0 0 18 1 1894.9636 P46013 P46013 1739 1756 MKI67 Antigen KI-67 yes yes 3 0.00011244 39.237 By MS/MS By MS/MS 2 1 0.55207 0.62612 67.363 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90068 1.0324 70.727 2 1 Median 0.46507 0.47248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25178000 11853000 13325000 0 0 0 0 0 0 23574000 10806000 12767000 1604800 1046700 558070 0 0 0 0 0 0 3062 2335 3191 15948;15949;15950 16404;16405;16406;16407;16408;16409;16410;16411 16406 8 ASQSQGIQQLLQAEK ______________________________ ASQSQGIQQLLQAEKRAAEKVSEARKRKNR M A S E K R 2 0 0 0 0 5 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 15 0 1627.8529 O75348;F2Z307;O95670 O75348 2 16 ATP6V1G1;ATP6V1G2-DDX39B;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 2 2.3282E-09 114.86 By MS/MS By matching 1 1 1.2573 1.2069 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2573 1.2069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9173000 4069000 5104000 0 0 0 0 0 0 8095400 3697200 4398200 0 0 0 0 0 0 1077500 371740 705780 3063 1660 3192 15951;15952 16412;16413 16412 2 ASQSQGIQQLLQAEKR ______________________________ SQSQGIQQLLQAEKRAAEKVSEARKRKNRR M A S K R A 2 1 0 0 0 5 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 16 1 1783.9541 O75348;F2Z307;O95670 O75348 2 17 ATP6V1G1;ATP6V1G2-DDX39B;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 2;3 1.279E-14 176.51 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 2 1 1 1.201 1.1663 7.8326 8 Median 1.1261 1.1054 5.1707 3 0 Median 1.3323 1.1762 NaN 1 0 Median 1.2356 1.2809 1.1292 2 0 Median 1.4911 1.2126 NaN 1 0 Median 0.94055 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median 117100000 50908000 66196000 74615000 33550000 41066000 12316000 5329400 6986100 25464000 9708600 15756000 347000 127510 219490 4361000 2192300 2168800 0 0 0 3064 1660 3193 15953;15954;15955;15956;15957;15958;15959;15960 16414;16415;16416;16417;16418;16419;16420;16421;16422 16420 9 ASRDEIFAQSK QAQMKDYQRELEEARASRDEIFAQSKESEK EEARASRDEIFAQSKESEKKLKSLEAEILQ R A S S K E 2 1 0 1 0 1 1 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 11 1 1250.6255 P35580 P35580 1666 1676 MYH10 Myosin-10 yes yes 2;3 0.00048061 58.674 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1.0608 1.0108 31.384 7 Median 0.97146 0.98424 NaN 1 0 Median 1.1226 1.0663 7.5618 2 0 Median 0.65841 0.78556 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66391 0.75042 NaN 1 0 Median 1.6673 1.4722 39.393 2 0 Median 20679000 10345000 10334000 3593400 1842400 1751000 6385200 3054100 3331100 2904100 1867700 1036500 0 0 0 3767900 2032000 1735900 4028700 1549000 2479700 3065 2245 3194 15961;15962;15963;15964;15965;15966;15967 16423;16424;16425;16426;16427;16428;16429;16430;16431 16428 9 ASREEILAQAK QAQMKDCMRELDDTRASREEILAQAKENEK DDTRASREEILAQAKENEKKLKSMEAEMIQ R A S A K E 3 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1214.6619 P35579 P35579 1659 1669 MYH9 Myosin-9 yes yes 2;3 0.00070978 81.338 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 6 1.1196 1.1608 52.611 18 Median 1.2802 1.2827 93.409 3 0 Median 1.0983 1.0429 65.127 5 0 Median 1.0592 1.2661 7.5913 2 0 Median NaN NaN NaN 0 0 Median 1.0804 1.2234 17.927 2 0 Median 1.1596 1.0452 23.342 6 1 Median 113340000 51262000 62082000 35259000 15209000 20050000 37361000 17166000 20194000 8397600 4400400 3997100 0 0 0 12320000 5720200 6600200 20007000 8766500 11240000 3066 2244 3195 15968;15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985 16432;16433;16434;16435;16436;16437;16438;16439;16440;16441;16442;16443;16444;16445;16446;16447;16448;16449;16450;16451;16452 16443 21 ASREEILAQAKENEK QAQMKDCMRELDDTRASREEILAQAKENEK ASREEILAQAKENEKKLKSMEAEMIQLQEE R A S E K K 3 1 1 0 0 1 4 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 15 2 1714.885 P35579 P35579 1659 1673 MYH9 Myosin-9 yes yes 3;4 0.00010191 53.981 By MS/MS By matching 2 1 1.1038 1.2963 14.253 3 Median 1.1286 1.1931 11.733 2 0 Median NaN NaN NaN 0 0 Median 1.1038 1.4583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19054000 8914600 10140000 18071000 8422400 9648800 0 0 0 983010 492190 490820 0 0 0 0 0 0 0 0 0 3067 2244 3196 15986;15987;15988 16453;16454;16455;16456;16457 16456 5 ASSAAGLTAAVVR HVEEFSPRAVYTSGKASSAAGLTAAVVRDE GKASSAAGLTAAVVRDEESHEFVIEAGALM K A S V R D 5 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 1 0 0 2 0 0 13 0 1172.6513 Q14566 Q14566 423 435 MCM6 DNA replication licensing factor MCM6 yes yes 2 3.4687E-05 102.52 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.85572 0.82717 61.074 7 Median 0.91056 0.87716 8.7855 2 2 Median 1.1718 1.0123 0.80546 2 0 Median 0.74913 0.79244 6.066 2 0 Median 0.18574 0.18145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90649000 46367000 44282000 24788000 13637000 11151000 48946000 22843000 26103000 15403000 8579700 6823500 1511600 1306900 204730 0 0 0 0 0 0 3068 2881 3197 15989;15990;15991;15992;15993;15994;15995 16458;16459;16460;16461 16461 4 ASSAASSEHFEK ______________________________ ______________________________ M A S E K L 3 0 0 0 0 0 2 0 1 0 0 1 0 1 0 4 0 0 0 0 0 0 12 0 1249.5575 Q9UEU0;J3KMW2;G3V5I2 Q9UEU0 2 13 VTI1B Vesicle transport through interaction with t-SNAREs homolog 1B yes no 2 0.00061232 71.349 By MS/MS 1 0.73184 0.691 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73184 0.691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5207800 3163600 2044300 0 0 0 0 0 0 5207800 3163600 2044300 0 0 0 0 0 0 0 0 0 3069 4256 3198 15996 16462 16462 1 ASSALIQESLKESYK ILENKDLIESLNQTKASSALIQESLKESYK ASSALIQESLKESYKLQISLDQERDAYLPL K A S Y K L 2 0 0 0 0 1 2 0 0 1 2 2 0 0 0 4 0 0 1 0 0 0 15 1 1652.8621 Q8NCM8 Q8NCM8 3466 3480 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.001626 55.426 By MS/MS 1 0.8698 0.94526 NaN 1 Median 0.8698 0.94526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4674100 2167600 2506600 4674100 2167600 2506600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3070 3418 3199 15997 16463 16463 1 ASSAQSGGSSGGPAVPTVQR ______________________________ SGGSSGGPAVPTVQRGIIKMVLSGCAIIVR M A S Q R G 3 1 0 0 0 2 0 4 0 0 0 0 0 0 2 5 1 0 0 2 0 0 20 0 1799.8762 Q7KZF4 Q7KZF4 2 21 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 3.1952E-19 154.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.88698 0.80544 9.7025 4 Median 0.82149 0.7928 NaN 1 0 Median 1.1395 0.97133 NaN 1 0 Median 0.7479 0.79618 NaN 1 0 Median 0.95769 0.81481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20766000 11151000 9614300 7782800 4509400 3273400 3291000 1653700 1637300 6904100 3708800 3195400 2787600 1279400 1508200 0 0 0 0 0 0 3071 3214 3200 15998;15999;16000;16001 16464;16465;16466;16467;16468;16469;16470 16465 7 ASSEGGTAAGAGLDSLHK RGLTARERFQNLDKKASSEGGTAAGAGLDS EGGTAAGAGLDSLHKNSVRSRCSAAARPSA K A S H K N 4 0 0 1 0 0 1 4 1 0 2 1 0 0 0 3 1 0 0 0 0 0 18 0 1627.7802 A0A1W2PNV4;C9JEY1;C9K057;O15143 A0A1W2PNV4 641 658 ARPC1B Actin-related protein 2/3 complex subunit 1B no no 3 0.00032449 47.09 By MS/MS By MS/MS By matching By MS/MS 3 3 1 2 1.1135 0.97051 19.397 9 Median 0.89181 0.903 7.3903 3 0 Median 1.6968 1.4906 22.163 3 3 Plateau 0.72355 0.80716 NaN 1 0 Median 1.2153 1.0277 12.434 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27222000 10780000 16441000 8235300 4101000 4134300 13069000 3910200 9159000 1161400 609970 551410 4755600 2159100 2596600 0 0 0 0 0 0 3072 334;1525 3201 16002;16003;16004;16005;16006;16007;16008;16009;16010 16471;16472;16473;16474;16475;16476;16477 16477 7 ASSGLLYPLER FQGHSGAQCITCSYKASSGLLYPLERGFIY CSYKASSGLLYPLERGFIYVHKPPVHIRFD K A S E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 0 1 2 0 0 1 0 0 0 11 0 1204.6452 Q08945 Q08945 347 357 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.00016143 100.02 By matching By matching By MS/MS By MS/MS 1 4 4 4 1.1862 1.093 19.493 13 Median NaN NaN NaN 0 0 Median 0.70907 0.76908 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.372 1.1699 14.866 4 0 Median 1.2623 1.2736 10.088 4 1 Median 1.1278 0.96849 8.0276 4 0 Median 46907000 21343000 25564000 0 0 0 1876100 875750 1000300 0 0 0 2854900 1227300 1627600 35538000 16108000 19430000 6638100 3131800 3506200 3073 2743 3202 16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023 16478;16479;16480;16481;16482;16483;16484 16479 7 ASSLGEIDESSELR LDFDLEPEPPPAPPRASSLGEIDESSELRV RASSLGEIDESSELRVLDIPGQDSETVFDI R A S L R V 1 1 0 1 0 0 3 1 0 1 2 0 0 0 0 4 0 0 0 0 0 0 14 0 1491.7053 Q16513 Q16513 581 594 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.0095208 48.741 By MS/MS 1 1.4073 1.2012 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4073 1.2012 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 958930 431390 527540 0 0 0 0 0 0 0 0 0 958930 431390 527540 0 0 0 0 0 0 3074 2982 3203 16024 16485 16485 1 ASSLNEDPEGSR ______________________________ ______________________________ M A S S R I 1 1 1 1 0 0 2 1 0 0 1 0 0 0 1 3 0 0 0 0 0 0 12 0 1260.5582 C9JNE2;Q9Y530;C9J5P1;C9JA90;C9IZY1 C9JNE2 2 13 OARD1 O-acetyl-ADP-ribose deacetylase 1 yes no 2 0.00052862 76.465 By MS/MS 1 0.63158 0.64016 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63158 0.64016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3950300 2477600 1472800 0 0 0 0 0 0 3950300 2477600 1472800 0 0 0 0 0 0 0 0 0 3075 711 3204 16025 16486;16487 16487 2 ASSSGNDDDLTIPR ______________________________ MASSSGNDDDLTIPRAAINKMIKETLPNVR M A S P R A 1 1 1 3 0 0 0 1 0 1 1 0 0 0 1 3 1 0 0 0 0 0 14 0 1446.6587 Q01658 Q01658 2 15 DR1 Protein Dr1 yes yes 2 5.5625E-08 125.74 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 1 0.93736 0.90633 18.06 7 Median 0.93736 0.90633 NaN 1 0 Median 0.87857 0.73482 NaN 1 0 Median 0.70359 0.69385 20.344 2 1 Median 1.1683 0.9467 0.89923 2 0 Median 0.94129 0.99599 NaN 1 0 Median NaN NaN NaN 0 0 Median 53705000 28434000 25272000 14367000 7325800 7041500 602160 331320 270840 32467000 17676000 14791000 2032600 875660 1156900 4235700 2224600 2011200 0 0 0 3076 2689 3205 16026;16027;16028;16029;16030;16031;16032 16488;16489;16490;16491;16492;16493;16494 16489 7 ASSSLGLQDFDLLR VGEEKEAMNTRESGKASSSLGLQDFDLLRV KASSSLGLQDFDLLRVIGRGSYAKVLLVRL K A S L R V 1 1 0 2 0 1 0 1 0 0 4 0 0 1 0 3 0 0 0 0 0 0 14 0 1520.7835 P41743 P41743 245 258 PRKCI Protein kinase C iota type yes yes 2 9.7392E-06 90.685 By MS/MS By MS/MS By matching 3 1 1 1.0411 1.0972 54.204 5 Median 1.1106 1.115 40.551 3 1 Plateau NaN NaN NaN 0 0 Median 1.0411 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.791 2.4681 NaN 1 0 Median 9941200 5286500 4654700 8288600 4572000 3716600 0 0 0 1488800 682890 805880 0 0 0 0 0 0 163840 31607 132230 3077 2303 3206 16033;16034;16035;16036;16037 16495;16496;16497;16498;16499;16500 16496 6 ASSTGSFTAPDPGLK YKYYRQKLEEFRKAKASSTGSFTAPDPGLK ASSTGSFTAPDPGLKRKSPPEALSGSLPPA K A S L K R 2 0 0 1 0 0 0 2 0 0 1 1 0 1 2 3 2 0 0 0 0 0 15 0 1434.6991 Q8IWZ8 Q8IWZ8 321 335 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 2 0.00087241 45.257 By MS/MS 1 0.68486 0.7168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68486 0.7168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5739600 3516200 2223400 0 0 0 0 0 0 5739600 3516200 2223400 0 0 0 0 0 0 0 0 0 3078 3330 3207 16038 16501;16502 16502 2 ASSTGSFTAPDPGLKR YKYYRQKLEEFRKAKASSTGSFTAPDPGLK SSTGSFTAPDPGLKRKSPPEALSGSLPPAT K A S K R K 2 1 0 1 0 0 0 2 0 0 1 1 0 1 2 3 2 0 0 0 0 0 16 1 1590.8002 Q8IWZ8 Q8IWZ8 321 336 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 3 0.023856 27.643 By MS/MS 1 0.62703 0.66527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62703 0.66527 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4828900 2595600 2233300 0 0 0 0 0 0 4828900 2595600 2233300 0 0 0 0 0 0 0 0 0 3079 3330 3208 16039 16503 16503 1 ASSTSPVEISEWLDQK FDAAATSGGSASSEKASSTSPVEISEWLDQ SSTSPVEISEWLDQKLTKSDRPELTGAKVV K A S Q K L 1 0 0 1 0 1 2 0 0 1 1 1 0 0 1 4 1 1 0 1 0 0 16 0 1775.8578 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6;H0YKF0 P13804 188 203 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.00013202 52.928 By MS/MS By MS/MS 1 1 0.82415 0.77557 8.0308 2 Median 0.79348 0.73275 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.856 0.82088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16860000 9000900 7859300 11395000 6003700 5390800 0 0 0 5465700 2997100 2468600 0 0 0 0 0 0 0 0 0 3080 1996 3209 16040;16041 16504;16505;16506 16505 3 ASSVGNVADSTEPTKR ______________________________ SSVGNVADSTEPTKRMLSFQGLAELAHREY M A S K R M 2 1 1 1 0 0 1 1 0 0 0 1 0 0 1 3 2 0 0 2 0 0 16 1 1617.7958 O15294 O15294 2 17 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 1.0689E-32 200.82 By MS/MS By MS/MS By MS/MS 2 2 1 0.91426 0.9448 11.194 5 Median NaN NaN NaN 0 0 Median 0.8941 0.83645 3.1915 2 2 Median 0.9181 1.0401 3.8486 2 1 Median 0.98313 0.9448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36626000 18767000 17859000 0 0 0 12117000 6434300 5682600 17460000 8922600 8537800 7048800 3410500 3638400 0 0 0 0 0 0 3081 1537 3210 16042;16043;16044;16045;16046 16507;16508;16509;16510;16511;16512;16513 16511 7 ASSVIFGLK EKNGSEELVEKKVCKASSVIFGLKGYVAER EKKVCKASSVIFGLKGYVAERKGEREEMQD K A S L K G 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 2 0 0 0 1 0 0 9 0 920.53312 Q9H0C8;F8SNU6 Q9H0C8 100 108 ILKAP;ILKAP2 Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2 0.0022552 73.26 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1.1577 1.0723 14.032 6 Median 1.2999 1.2372 9.9228 2 0 Median NaN NaN NaN 0 0 Median 1.0246 0.99698 NaN 1 0 Median 1.3492 1.2252 NaN 1 0 Median 0.91027 0.96426 NaN 1 0 Median 1.0983 0.9466 NaN 1 0 Median 16933000 7892100 9041100 5582900 2578600 3004300 0 0 0 8147500 3763500 4384000 684780 294670 390100 2066100 1062400 1003700 452010 192930 259090 3082 3923 3211 16047;16048;16049;16050;16051;16052 16514;16515 16515 2 ASSVVVSGTPIR LMPNWLHLPVGYHGRASSVVVSGTPIRRPM HGRASSVVVSGTPIRRPMGQMKPDDSKPPV R A S I R R 1 1 0 0 0 0 0 1 0 1 0 0 0 0 1 3 1 0 0 3 0 0 12 0 1171.6561 P16930 P16930 163 174 FAH Fumarylacetoacetase yes yes 2 4.3444E-06 125.75 By MS/MS By MS/MS 2 2 1.0775 0.98019 7.2266 4 Linear 0.89996 0.90672 6.659 2 0 Median 1.0536 0.94999 9.5185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20810000 10066000 10744000 9147400 4696000 4451400 11663000 5370200 6292400 0 0 0 0 0 0 0 0 0 0 0 0 3083 2032 3212 16053;16054;16055;16056 16516;16517;16518;16519 16519 4 ASTAAAPLAAWVK LFKNKGSFDPKNAKRASTAAAPLAAWVKAN KRASTAAAPLAAWVKANIQYSHVLERIHPL R A S V K A 6 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 13 0 1255.6925 Q8NCM8 Q8NCM8 3082 3094 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.0055843 38.567 By MS/MS 1 0.79319 0.79322 NaN 1 Median 0.79319 0.79322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7840300 4326800 3513500 7840300 4326800 3513500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3084 3418 3213 16057 16520 16520 1 ASTALSNEQQAR TLSSVQNEVQEALQRASTALSNEQQARRDC LQRASTALSNEQQARRDCQEQAKIAVEAQN R A S A R R 3 1 1 0 0 2 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 12 0 1274.6215 P12270 P12270 1054 1065 TPR Nucleoprotein TPR yes yes 2 0.069766 24.089 By MS/MS By matching 1 1 1.254 1.2317 12.474 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0133 1.1277 NaN 1 0 Median 1.5518 1.3452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1155600 542190 613420 0 0 0 0 0 0 995700 486400 509290 159910 55782 104120 0 0 0 0 0 0 3085 1978 3214 16058;16059 16521 16521 1 ASTEGVAIQGQQGTR KNPPKNVQQHEKVQKASTEGVAIQGQQGTR ASTEGVAIQGQQGTRLLPEQLIKEAFILSD K A S T R L 2 1 0 0 0 3 1 3 0 1 0 0 0 0 0 1 2 0 0 1 0 0 15 0 1501.7485 Q92621 Q92621 70 84 NUP205 Nuclear pore complex protein Nup205 yes yes 2 9.3738E-05 80.979 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1558 1.0587 20.432 5 Median NaN NaN NaN 0 0 Median 1.5469 1.2989 NaN 1 0 Median 0.96617 1.0587 NaN 1 0 Median 1.3427 1.1806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0304 0.8523 14.88 2 1 Median 12208000 5884700 6323500 0 0 0 1080500 482740 597710 7771100 3963900 3807200 1298100 544220 753910 0 0 0 2058500 893830 1164700 3086 3547 3215 16060;16061;16062;16063;16064 16522;16523;16524;16525;16526;16527;16528;16529;16530 16522 9 ASTEVGEMAK LQHLSSGHFLRENIKASTEVGEMAKQYIEK RENIKASTEVGEMAKQYIEKSLLVPDHVIT K A S A K Q 2 0 0 0 0 0 2 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 10 0 1021.475 P27144 P27144 46 55 AK4 Adenylate kinase 4, mitochondrial yes yes 2 0.017044 38.086 By MS/MS 1 0.91978 0.87961 NaN 1 Median 0.91978 0.87961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2012400 916760 1095600 2012400 916760 1095600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3087 2151 3216 16065 16531;16532 16532 2 ASTLLRDEELEEIKK ______________________________ ASTLLRDEELEEIKKETGFSHSQITRLYSR R A S K K E 1 1 0 1 0 0 4 0 0 1 3 2 0 0 0 1 1 0 0 0 0 0 15 2 1772.952 Q99653;H0YKE7;F5GX29;H0YNG9;H0YLX1 Q99653 5 19 CHP1 Calcineurin B homologous protein 1 yes no 3 0.00026599 45.864 By MS/MS By MS/MS 1 1 1.0948 1.0519 18.24 2 Median 1.1239 1.1968 NaN 1 0 Median 1.0665 0.92465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15974000 6490000 9483900 12900000 5001700 7898600 3073600 1488300 1585400 0 0 0 0 0 0 0 0 0 0 0 0 3088 3760 3217 16066;16067 16533;16534;16535 16535 3 ASTNAMLISAGLPPLK DREREREKEKEKELRASTNAMLISAGLPPL STNAMLISAGLPPLKASHSAHSTHSAHSTH R A S L K A 3 0 1 0 0 0 0 1 0 1 3 1 1 0 2 2 1 0 0 0 0 0 16 0 1582.8753 O43143 O43143 63 78 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 5.6434E-05 73.435 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 0.77696 0.77059 28.358 7 Median 1.0888 1.0229 55.067 2 0 Median 0.90244 0.78864 NaN 1 0 Median 0.69899 0.77059 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75708 0.74931 6.7573 2 1 Median 0.77696 0.64702 NaN 1 0 Median 45341000 23848000 21493000 6039100 3481200 2557900 9536000 4522500 5013600 5301700 3263300 2038400 0 0 0 21293000 10792000 10501000 3171100 1789300 1381700 3089 1553 3218 16068;16069;16070;16071;16072;16073;16074 16536;16537;16538;16539;16540;16541;16542;16543 16541 8 ASTSDYQVISDR TPRISTMRPLATAYKASTSDYQVISDRQTP AYKASTSDYQVISDRQTPKKDESLVSKAME K A S D R Q 1 1 0 2 0 1 0 0 0 1 0 0 0 0 0 3 1 0 1 1 0 0 12 0 1340.6208 Q8NFH5 Q8NFH5 295 306 NUP35 Nucleoporin NUP53 yes yes 2 3.7649E-05 96.009 By matching By MS/MS By MS/MS 1 1 1 1.0073 0.97005 2.5157 3 Median 1.0073 1.0061 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99657 0.97005 NaN 1 0 Median 1.1277 0.95869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24671000 10971000 13700000 2977300 1587800 1389500 0 0 0 15323000 6571600 8751700 6370900 2811800 3559000 0 0 0 0 0 0 3090 3437 3219 16075;16076;16077 16544;16545;16546 16544 3 ASTSLKPPTADLFTGVLPNGYNPPR KWVRMQKLEMEQVWRASTSLKPPTADLFTG DLFTGVLPNGYNPPRNLCWDVLCVDQPLVE R A S P R N 2 1 2 1 0 0 0 2 0 0 3 1 0 1 5 2 3 0 1 1 0 0 25 1 2612.3599 O00754 O00754 241 265 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes yes 3 4.3786E-05 31.775 By MS/MS 1 0.36361 0.38925 NaN 1 Median 0.36361 0.38925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1874300 1312200 562090 1874300 1312200 562090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3091 1477 3220 16078 16547 16547 1 ASVDELFAEIVR EEWSCPFMETSAKNKASVDELFAEIVRQMN KNKASVDELFAEIVRQMNYAAQPNGDEGCC K A S V R Q 2 1 0 1 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 2 0 0 12 0 1347.7034 P61225 P61225 151 162 RAP2B Ras-related protein Rap-2b yes yes 2 0.016133 34.532 By matching By MS/MS 1 1 1.3718 1.2449 3.0092 2 Median 1.2379 1.2187 NaN 1 0 Median 1.5202 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1025900 436250 589620 430270 201010 229260 595600 235240 360360 0 0 0 0 0 0 0 0 0 0 0 0 3092 2552 3221 16079;16080 16548;16549 16548 2 ASVEKGDYYEAHQMYR GRNRGGVQRVEGKLRASVEKGDYYEAHQMY SVEKGDYYEAHQMYRTLFFRYMSQSKHTEA R A S Y R T 2 1 0 1 0 1 2 1 1 0 0 1 1 0 0 1 0 0 3 1 0 0 16 1 1945.8629 Q7L5D6 Q7L5D6 32 47 GET4 Golgi to ER traffic protein 4 homolog yes yes 3 0.0025711 29.341 By MS/MS By MS/MS 1 1 1.1119 1.0557 2.0602 2 Median 1.0797 1.0712 NaN 1 0 Median 1.1451 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4199100 1993100 2206000 2409200 1173400 1235800 1789900 819680 970180 0 0 0 0 0 0 0 0 0 0 0 0 3093 3225 3222 16081;16082 16550;16551 16550 2 ASVETSPLLR VSAEKKLTGSTVGMRASVETSPLLRFRAES TVGMRASVETSPLLRFRAESVVPARMAEMA R A S L R F 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 2 1 0 0 1 0 0 10 0 1071.5924 P53602;H3BP35 P53602 217 226 MVD Diphosphomevalonate decarboxylase yes no 2 0.0030923 57.96 By MS/MS 1 0.91231 0.78701 NaN 1 Median NaN NaN NaN 0 0 Median 0.91231 0.78701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866500 1586900 1279500 0 0 0 2866500 1586900 1279500 0 0 0 0 0 0 0 0 0 0 0 0 3094 2470 3223 16083 16552 16552 1 ASVGECPAPVPVK ______________________________ ______________________________ M A S V K D 2 0 0 0 1 0 1 1 0 0 0 1 0 0 3 1 0 0 0 3 0 0 13 0 1309.67 P56134 P56134 2 14 ATP5J2 ATP synthase subunit f, mitochondrial yes yes 2 6.0647E-05 86.624 By MS/MS 1 1.1081 0.91696 NaN 1 Median NaN NaN NaN 0 0 Median 1.1081 0.91696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4554800 2347400 2207400 0 0 0 4554800 2347400 2207400 0 0 0 0 0 0 0 0 0 0 0 0 3095 2506 3224 16084 16553;16554 16553 2 ASVHTLSGHTNAVATVR CSRDSTARIWDVRTKASVHTLSGHTNAVAT VHTLSGHTNAVATVRCQAAEPQIITGSHDT K A S V R C 3 1 1 0 0 0 0 1 2 0 1 0 0 0 0 2 3 0 0 3 0 0 17 0 1719.9016 O43660;H0YA24 O43660 321 337 PLRG1 Pleiotropic regulator 1 yes no 3;4 2.8198E-06 81.428 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 9 8 3 6 1.1614 1.0248 19.472 35 Median 1.1885 1.1894 21.287 3 0 Median 1.177 1.0285 15.571 6 0 Median 0.99205 0.99934 24.002 9 1 Median 1.2507 1.0602 8.4165 8 0 Median 1.1121 1.1152 19.734 3 0 Plateau 1.1822 1.0008 19.586 6 0 Median 92477000 42412000 50065000 5409200 2460200 2949100 10054000 4187500 5866800 32986000 16299000 16687000 26427000 11527000 14899000 10143000 4950000 5192700 7458400 2988300 4470200 3096 1580 3225 16085;16086;16087;16088;16089;16090;16091;16092;16093;16094;16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107;16108;16109;16110;16111;16112;16113;16114;16115;16116;16117;16118;16119 16555;16556;16557;16558;16559;16560;16561;16562;16563;16564;16565;16566;16567;16568;16569;16570;16571;16572;16573;16574;16575;16576;16577;16578;16579;16580;16581 16574 27 ASVITQVFHVPLEER QEPSGAWGNKIRPIKASVITQVFHVPLEER ASVITQVFHVPLEERKYKDMNQFGEGEQAK K A S E R K 1 1 0 0 0 1 2 0 1 1 1 0 0 1 1 1 1 0 0 3 0 0 15 0 1723.9257 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62 Q00341 73 87 HDLBP Vigilin yes no 2;3 8.0681E-10 158.4 By MS/MS By MS/MS By matching 2 1 1 0.91962 0.88831 24.027 4 Median 0.9465 0.88831 15.165 2 0 Median NaN NaN NaN 0 0 Median 0.99474 1.0943 NaN 1 0 Median 0.74176 0.63706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38017000 18131000 19886000 33211000 15680000 17531000 0 0 0 4223700 2075200 2148500 582330 375510 206830 0 0 0 0 0 0 3097 4 3226 16120;16121;16122;16123 16582;16583;16584;16585;16586;16587 16585 6 ASVITQVFHVPLEERK QEPSGAWGNKIRPIKASVITQVFHVPLEER SVITQVFHVPLEERKYKDMNQFGEGEQAKI K A S R K Y 1 1 0 0 0 1 2 0 1 1 1 1 0 1 1 1 1 0 0 3 0 0 16 1 1852.0207 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62 Q00341 73 88 HDLBP Vigilin yes no 3 0.0092105 23.527 By MS/MS 1 1.6357 1.6466 NaN 1 Median 1.6357 1.6466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8043500 2573200 5470200 8043500 2573200 5470200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3098 4 3227 16124 16588 16588 1 ASVLFANEK AIVIDPKNPLCKFHRASVLFANEKYKSALQ LCKFHRASVLFANEKYKSALQELEELKQIV R A S E K Y 2 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 9 0 977.5182 G5EA36;I3L394 G5EA36 709 717 CDC27 no no 2 0.011539 47.198 By MS/MS By MS/MS 1 1 1.0466 1.0206 6.7871 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97932 1.0707 NaN 1 0 Median 1.1185 0.97273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10132000 2945100 7186800 0 0 0 0 0 0 9184400 2474900 6709600 947470 470240 477230 0 0 0 0 0 0 3099 1135 3228 16125;16126 16589;16590;16591 16589 3 ASVLFDTMQHHLALNR SPPIDAASAEPYGFRASVLFDTMQHHLALN SVLFDTMQHHLALNRDLSTPGLEKDSGGKT R A S N R D 2 1 1 1 0 1 0 0 2 0 3 0 1 1 0 1 1 0 0 1 0 0 16 0 1851.9414 P46821 P46821 1834 1849 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3;4 7.9624E-06 82.55 By MS/MS By matching By MS/MS By matching 3 1 3 2 1.2135 1.2621 17.359 9 Median 1.2354 1.21 11.582 3 0 Median 0.97531 0.83259 NaN 1 0 Median 1.2135 1.2773 3.4117 3 0 Median 1.3821 1.2005 24.569 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58030000 26406000 31624000 21596000 10516000 11080000 1022200 556130 466090 33906000 14696000 19210000 1505300 637390 867870 0 0 0 0 0 0 3100 2347 3229;3230 16127;16128;16129;16130;16131;16132;16133;16134;16135 16592;16593;16594;16595;16596;16597;16598 16593 1071 7 ASVLLGSR SRTLTRTSQETADVKASVLLGSRGLDISHI QETADVKASVLLGSRGLDISHISQRLESLS K A S S R G 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 8 0 801.47085 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 60 67 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.014384 51.193 By MS/MS By MS/MS 1 1 1.1096 1.0649 12.131 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0856 1.1603 NaN 1 1 Median 1.1342 0.97737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7089200 3298100 3791200 0 0 0 0 0 0 4534600 2122900 2411700 2554600 1175200 1379500 0 0 0 0 0 0 3101 3356 3231 16136;16137 16599;16600 16600 2 ASVMLFMK KAPKLEERLKVLTNKASVMLFMKGNKQEAK LKVLTNKASVMLFMKGNKQEAKCGFSKQIL K A S M K G 1 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 0 0 0 1 0 0 8 0 925.47653 O76003 O76003 246 253 GLRX3 Glutaredoxin-3 yes yes 2 0.028842 40.103 By MS/MS By matching 1 1 1.1552 1.0254 12.476 2 Median 1.2113 1.12 NaN 1 0 Median 1.1016 0.93881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26839000 11914000 14925000 15020000 6383600 8636400 11819000 5530100 6288400 0 0 0 0 0 0 0 0 0 0 0 0 3102 1715 3232 16138;16139 16601;16602 16602 2 ASVPSVQIQGQR QHSSTGPPPLLLAPRASVPSVQIQGQRIIQ APRASVPSVQIQGQRIIQQGLIRVANVPNT R A S Q R I 1 1 0 0 0 3 0 1 0 1 0 0 0 0 1 2 0 0 0 2 0 0 12 0 1268.6837 Q86YP4 Q86YP4 274 285 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00043077 78.934 By MS/MS 1 0.78923 0.82029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78923 0.82029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5843500 3343000 2500600 0 0 0 0 0 0 5843500 3343000 2500600 0 0 0 0 0 0 0 0 0 3103 3309 3233 16140 16603;16604 16604 2 ASVSITFDNSDKK LQDLVYKNGQAGITKASVSITFDNSDKKQS TKASVSITFDNSDKKQSPLGFEVHDEITVT K A S K K Q 1 0 1 2 0 0 0 0 0 1 0 2 0 1 0 3 1 0 0 1 0 0 13 1 1410.6991 O95347 O95347 77 89 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 2.0305E-22 161.51 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.1108 1.1569 32.95 8 Median 1.5153 1.5928 73.65 2 2 Median 1.152 1.0714 NaN 1 0 Median 1.1039 1.2809 2.0146 2 0 Median 1.0828 1.0314 2.9492 2 1 Median NaN NaN NaN 0 0 Median 1.3811 1.2492 NaN 1 0 Median 91092000 40154000 50937000 14449000 6749500 7699600 5911300 2145600 3765800 32583000 15293000 17290000 37041000 15447000 21594000 0 0 0 1107300 519490 587840 3104 1766 3234 16141;16142;16143;16144;16145;16146;16147;16148;16149 16605;16606;16607;16608;16609;16610;16611;16612;16613;16614 16614 10 ASVSPMDEPVPDSESPIEK PVSFEFSDAKDENERASVSPMDEPVPDSES PMDEPVPDSESPIEKVLSPLRSPPLIGSES R A S E K V 1 0 0 2 0 0 3 0 0 1 0 1 1 0 4 4 0 0 0 2 0 0 19 0 2012.9249 P46821 P46821 1375 1393 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 4.9367E-13 103.21 By MS/MS By MS/MS By MS/MS 1 2 2 0.52212 0.55792 21.066 5 Median 0.51452 0.51497 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.43845 0.47762 21.976 2 0 Median 0.71753 0.67327 6.2509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35169000 21700000 13469000 9504300 5954900 3549400 0 0 0 20737000 13188000 7549500 4927500 2557600 2369900 0 0 0 0 0 0 3105 2347 3235 16150;16151;16152;16153;16154 16615;16616;16617;16618;16619;16620;16621 16616 7 ASVSQVEADLK PQDFLDRLSSLDNLKASVSQVEADLKMLRT DNLKASVSQVEADLKMLRTAVDSLVAYSVK K A S L K M 2 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1145.5928 Q07065 Q07065 541 551 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00013248 118.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1.4017 1.2749 34.745 8 Median 1.0474 0.99489 2.7444 2 0 Median 1.472 1.3225 40.957 3 0 Median 1.6053 1.6333 NaN 1 0 Median 1.635 1.4932 42.786 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101050000 40304000 60743000 63113000 27969000 35144000 23899000 7400400 16499000 10347000 3834600 6512200 3688000 1099600 2588400 0 0 0 0 0 0 3106 2730 3236 16155;16156;16157;16158;16159;16160;16161;16162 16622;16623;16624;16625;16626;16627;16628 16627 7 ASVSSATFSGHGAR ______________________________ MASVSSATFSGHGARSLLQFLRLVGQLKRV M A S A R S 3 1 0 0 0 0 0 2 1 0 0 0 0 1 0 4 1 0 0 1 0 0 14 0 1333.6375 Q7Z4H3;V9GYS5;V9GZ04 Q7Z4H3 2 15 HDDC2 HD domain-containing protein 2 yes no 2 1.6979E-24 204.5 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1.2556 1.1202 6.2715 8 Median 1.1714 1.1072 0.33423 2 0 Median 1.3965 1.155 3.021 2 0 Median 1.299 1.2679 8.6017 3 2 Plateau 1.2594 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79110000 37007000 42103000 46571000 22738000 23833000 8955400 3627200 5328100 21316000 9563200 11753000 2268700 1079400 1189300 0 0 0 0 0 0 3107 3245 3237 16163;16164;16165;16166;16167;16168;16169;16170 16629;16630;16631;16632;16633;16634 16630 6 ASVTIQAR LKCKALQEENRDLRKASVTIQARAEQEEEF ENRDLRKASVTIQARAEQEEEFISNTLFKK K A S A R A 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 8 0 844.47667 Q16204 Q16204 97 104 CCDC6 Coiled-coil domain-containing protein 6 yes yes 2 0.010149 77.282 By MS/MS 1 0.8561 0.74087 NaN 1 Median NaN NaN NaN 0 0 Median 0.8561 0.74087 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6763400 3564400 3199000 0 0 0 6763400 3564400 3199000 0 0 0 0 0 0 0 0 0 0 0 0 3108 2980 3238 16171 16635 16635 1 ASVTLSEAEK ______________________________ ______________________________ M A S E K V 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 10 0 1033.5292 Q15024 Q15024 2 11 EXOSC7 Exosome complex component RRP42 yes yes 2 3.7635E-05 116.3 By MS/MS By MS/MS By MS/MS 1 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3109 2916 3239 16172;16173;16174;16175 16636;16637;16638;16639 16638 4 ASVTVGGEQISAIGR ______________________________ ASVTVGGEQISAIGRGICVLLGISLEDTQK R A S G R G 2 1 0 0 0 1 1 3 0 2 0 0 0 0 0 2 1 0 0 2 0 0 15 0 1443.7682 Q8TEA8;A0A2R8Y6X2;A0A2R8YCT7 Q8TEA8 11 25 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes no 2 7.0744E-10 150.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0774 1.0342 29.876 7 Median 0.98769 0.96368 8.6466 2 0 Median 0.88964 0.73589 60.339 2 0 Median 1.0774 1.0342 NaN 1 0 Median 1.3108 1.093 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3024 1.049 NaN 1 0 Median 223440000 104790000 118660000 117750000 57478000 60274000 19467000 7890100 11577000 59418000 27896000 31521000 22328000 9557800 12770000 0 0 0 4477900 1964400 2513500 3110 3476 3240 16176;16177;16178;16179;16180;16181;16182 16640;16641;16642;16643;16644;16645;16646;16647;16648;16649 16645 10 ASVVPVKDKK ______________________________ ______________________________ M A S K K L 1 0 0 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 3 0 0 10 2 1069.6495 C9JJT5;G3V325 C9JJT5 2 11 ATP5J2-PTCD1 yes no 2 0.00015623 78.334 By matching By MS/MS 1 1 0.92941 0.8343 0.16747 2 Median 0.82505 0.83331 NaN 1 0 Median 1.047 0.83529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5821900 3035400 2786500 4043000 2195400 1847600 1778900 840010 938900 0 0 0 0 0 0 0 0 0 0 0 0 3111 703 3241 16183;16184 16650 16650 1 ASVVTLPVYLNFTR LTQLRWVKQTNTEKKASVVTLPVYLNFTRA KASVVTLPVYLNFTRADLIFTVDFEIATKE K A S T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 1 1 1 2 0 1 3 0 0 14 0 1578.877 Q14204;A0A2R8Y706 Q14204 4602 4615 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0023273 43.628 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 2 0.89703 0.87538 15.662 10 Median 0.79464 0.78039 20.48 2 0 Median 0.84654 0.71071 19.327 2 0 Median 0.84617 0.91678 10.222 2 0 Median 1.0586 0.93352 5.407 2 0 Median NaN NaN NaN 0 0 Median 0.95437 0.82671 15.789 2 0 Median 57128000 32707000 24421000 34680000 20818000 13862000 11615000 6030200 5584500 10385000 5591500 4793500 163420 75960 87459 0 0 0 284960 191650 93311 3112 2865 3242 16185;16186;16187;16188;16189;16190;16191;16192;16193;16194 16651;16652;16653;16654;16655 16651 5 ASWPSVQQGLQQSFLHTLDSYR CRSIVRTLHQHKLGRASWPSVQQGLQQSFL QGLQQSFLHTLDSYRILQKAAPFDRRATSL R A S Y R I 1 1 0 1 0 4 0 1 1 0 3 0 0 1 1 4 1 1 1 1 0 0 22 0 2547.2506 Q92466;A0A087X0X5;A0A087WW71 Q92466 81 102 DDB2 DNA damage-binding protein 2 yes no 3 0.00011581 33.024 By MS/MS 1 0.67848 0.68119 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67848 0.68119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3691900 1937100 1754800 0 0 0 0 0 0 3691900 1937100 1754800 0 0 0 0 0 0 0 0 0 3113 3527 3243 16195 16656;16657;16658 16657 3 ASWSSLSMDEK KHLSASQKALKEKEKASWSSLSMDEKVELY EKEKASWSSLSMDEKVELYRIKFKESFAEM K A S E K V 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 4 0 1 0 0 0 0 11 0 1239.5442 P13073;H3BPG0;H3BN72;H3BNV9;Q86WV2 P13073 68 78 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.00013559 86.898 By MS/MS By MS/MS 1 2 1.2613 1.0822 21.539 3 Median 0.84727 0.79766 NaN 1 0 Median 1.3609 1.1439 7.8431 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41253000 19656000 21597000 24825000 12914000 11911000 16428000 6742300 9686000 0 0 0 0 0 0 0 0 0 0 0 0 3114 1988 3244 16196;16197;16198 16659;16660;16661;16662;16663;16664 16660 6 ASYAEQLSMLK VAEQERTAQQLRAEKASYAEQLSMLKKAHG RAEKASYAEQLSMLKKAHGLLAEENRGLGE K A S L K K 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 11 0 1239.6169 A0A087WY61;K4DIE0;Q14980 Q14980 1431 1441 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00016143 93.649 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 4 1.1209 1.0081 23.816 10 Median NaN NaN NaN 0 0 Median 1.1067 0.98125 NaN 1 0 Median 0.89691 0.98937 6.1475 2 0 Median 1.207 1.0953 NaN 1 0 Median 0.79228 0.8232 28.138 2 0 Median 1.4232 1.2214 25.838 4 0 Median 79806000 39239000 40567000 0 0 0 5563400 2676900 2886500 47831000 23934000 23897000 1615400 713080 902320 19887000 9867600 10020000 4908600 2046700 2861900 3115 2905;77 3245;3246 16199;16200;16201;16202;16203;16204;16205;16206;16207;16208 16665;16666;16667;16668;16669 16669 30 5 ASYAEQLSMLKK VAEQERTAQQLRAEKASYAEQLSMLKKAHG AEKASYAEQLSMLKKAHGLLAEENRGLGER K A S K K A 2 0 0 0 0 1 1 0 0 0 2 2 1 0 0 2 0 0 1 0 0 0 12 1 1367.7119 A0A087WY61;K4DIE0;Q14980 Q14980 1431 1442 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 5.6416E-06 120.09 By matching By MS/MS By matching By MS/MS By MS/MS 1 4 3 3 3 0.93821 1.0363 20.442 14 Median NaN NaN NaN 0 0 Median 1.0811 1.0535 NaN 1 0 Median 0.91243 1.0591 3.153 4 0 Median 0.72699 0.67914 38.928 3 0 Median 0.94754 1.0188 3.7844 3 0 Median 1.1798 1.0505 5.0243 3 0 Plateau 177940000 92132000 85804000 0 0 0 1109200 508500 600650 109170000 59469000 49697000 3565700 1997500 1568300 61390000 28951000 32439000 2705400 1205900 1499500 3116 2905;77 3247;3248 16209;16210;16211;16212;16213;16214;16215;16216;16217;16218;16219;16220;16221;16222 16670;16671;16672;16673;16674;16675;16676;16677;16678;16679;16680;16681;16682 16681 30 13 ASYGHSMVVDPWGTVVAR YVVAAAQCGRHHEKRASYGHSMVVDPWGTV GHSMVVDPWGTVVARCSEGPGLCLARIDLN R A S A R C 2 1 0 1 0 0 0 2 1 0 0 0 1 0 1 2 1 1 1 4 0 0 18 0 1930.936 Q86X76 Q86X76 267 284 NIT1 Nitrilase homolog 1 yes yes 3 0.0086113 23.1 By MS/MS By matching 1 1 0.93184 0.82852 4.7526 2 Median 0.85657 0.80114 NaN 1 0 Median 1.0137 0.85684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12379000 6640100 5739300 10792000 5706300 5086100 1587100 933870 653240 0 0 0 0 0 0 0 0 0 0 0 0 3117 3300 3249 16223;16224 16683;16684 16684 2 ASYGVEDPEYAVTQLAQTTMR QIDGVLYLRIMDPYKASYGVEDPEYAVTQL DPEYAVTQLAQTTMRSELGKLSLDKVFRER K A S M R S 3 1 0 1 0 2 2 1 0 0 1 0 1 0 1 1 3 0 2 2 0 0 21 0 2329.0896 Q9UJZ1;A0A087WYB4 Q9UJZ1 115 135 STOML2 Stomatin-like protein 2, mitochondrial yes no 2;3 0.029702 20.625 By MS/MS By matching 2 1 0.91302 0.91811 39.494 3 Median 0.67571 0.67906 42.654 2 1 Median NaN NaN NaN 0 0 Median 1.0245 1.0561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5273200 3082700 2190500 4595700 2757300 1838400 0 0 0 677540 325450 352090 0 0 0 0 0 0 0 0 0 3118 4304 3250 16225;16226;16227 16685;16686 16686 2 ASYILMEK EMVQALKQLKDSEERASYILMEKIEPEPFE LKDSEERASYILMEKIEPEPFENCLLRPGS R A S E K I 1 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 8 0 953.4892 A0A2R8Y430;P48637;A0A2R8Y5T7 A0A2R8Y430 393 400 GSS Glutathione synthetase yes no 2 0.050613 51.854 By MS/MS 1 0.99245 0.92278 NaN 1 Median 0.99245 0.92278 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10483000 5818400 4664400 10483000 5818400 4664400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3119 358 3251 16228 16687 16687 1 ASYVAPLTAQPATYR FFGRDRSPLRRSPPRASYVAPLTAQPATYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP R A S Y R A 4 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 2 0 2 1 0 0 15 0 1607.8308 Q96PK6 Q96PK6 224 238 RBM14 RNA-binding protein 14 yes yes 2;3 2.3828E-10 123.67 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 7 4 4 0.99198 0.85215 17.711 19 Median 0.79145 0.75602 NaN 1 1 Median 0.91273 0.77403 NaN 1 0 Median 0.73206 0.75426 15.152 3 1 Median 1.0526 0.89127 15.658 6 1 Median 0.79497 0.80431 15.413 4 0 Median 1.209 1.0214 23.138 4 0 Median 287260000 162830000 124430000 3684400 2187500 1496900 961260 456420 504850 122130000 71351000 50775000 18276000 8682400 9593200 136590000 77459000 59136000 5618500 2692600 2926000 3120 3712 3252 16229;16230;16231;16232;16233;16234;16235;16236;16237;16238;16239;16240;16241;16242;16243;16244;16245;16246;16247;16248 16688;16689;16690;16691;16692;16693;16694;16695;16696;16697;16698;16699;16700;16701;16702;16703;16704;16705;16706;16707;16708;16709 16695 22 ASYVAWGHSTVVNPWGEVLAK NQVYVATASPARDDKASYVAWGHSTVVNPW GHSTVVNPWGEVLAKAGTEEAIVYSDIDLK K A S A K A 3 0 1 0 0 0 1 2 1 0 1 1 0 0 1 2 1 2 1 4 0 0 21 0 2270.1484 Q9NQR4 Q9NQR4 214 234 NIT2 Omega-amidase NIT2 yes yes 3 0.0068575 22.585 By MS/MS By matching 1 1 0.98047 0.87934 17.984 2 Median 0.81646 0.77434 NaN 1 0 Median 1.1774 0.99859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6403500 3381300 3022200 5677100 3043200 2633800 726450 338110 388350 0 0 0 0 0 0 0 0 0 0 0 0 3121 4064 3253 16249;16250 16710;16711 16710 2 ATAAETSASEPEAESK ______________________________ TAAETSASEPEAESKAGPKADGEEDEVKAA M A T S K A 5 0 0 0 0 0 4 0 0 0 0 1 0 0 1 3 2 0 0 0 0 0 16 0 1577.7057 A0A499FI31;Q15020;A0A494C0L2;F8W667 A0A499FI31 2 17 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 5.4023E-10 105.65 By MS/MS By matching By MS/MS 1 1 1 0.75686 0.70133 41.285 2 Median 0.95599 0.93909 NaN 1 0 Median 0.59921 0.52377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5172300 2599100 2573200 3972100 1794600 2177500 1200200 804580 395640 0 0 0 0 0 0 0 0 0 0 0 0 3122 473 3254 16251;16252;16253 16712;16713;16714 16712 3 ATAAFILANEHNVALFK MQDQEHPSIRTLSARATAAFILANEHNVAL AAFILANEHNVALFKHFADLLPGFLQAVND R A T F K H 5 0 2 0 0 0 1 0 1 1 2 1 0 2 0 0 1 0 0 1 0 0 17 0 1828.9836 O00410;H0Y8C6 O00410 196 212 IPO5 Importin-5 yes no 2;3 0.00014288 48.741 By MS/MS By matching By matching By matching 3 2 1 1 1.0743 1.0394 26.853 7 Median 1.0743 1.0394 13.723 3 0 Median 0.85026 0.73217 9.0051 2 0 Median 1.2799 1.3642 NaN 1 0 Median 1.333 1.305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27045000 13647000 13399000 19092000 9689700 9402000 6286300 3138900 3147500 784030 363130 420900 883240 455020 428220 0 0 0 0 0 0 3123 1460 3255 16254;16255;16256;16257;16258;16259;16260 16715;16716;16717;16718 16716 4 ATAAFSNVGTAISK AYKKTHETLSHAGQKATAAFSNVGTAISKK KATAAFSNVGTAISKKFGDMSYSIRHSISM K A T S K K 4 0 1 0 0 0 0 1 0 1 0 1 0 1 0 2 2 0 0 1 0 0 14 0 1336.6987 E9PNK6;E9PPQ1;J3KNE7;Q16890 E9PNK6 110 123 TPD52L1 Tumor protein D53 yes no 2 4.1003E-08 105.03 By MS/MS By MS/MS 2 1 1.5572 1.352 27.455 3 Median 1.4839 1.3916 38.755 2 0 Median 1.5572 1.352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27315000 11465000 15850000 25979000 10942000 15036000 1336400 522150 814200 0 0 0 0 0 0 0 0 0 0 0 0 3124 973 3256 16261;16262;16263 16719;16720;16721;16722;16723 16719 5 ATAAFSNVGTAISKK AYKKTHETLSHAGQKATAAFSNVGTAISKK ATAAFSNVGTAISKKFGDMSYSIRHSISMP K A T K K F 4 0 1 0 0 0 0 1 0 1 0 2 0 1 0 2 2 0 0 1 0 0 15 1 1464.7936 E9PNK6;E9PPQ1;J3KNE7;Q16890 E9PNK6 110 124 TPD52L1 Tumor protein D53 yes no 2;3 0.00049991 56.936 By MS/MS 2 1.3188 1.3228 7.5282 2 Median 1.3188 1.3228 7.5282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7261400 3262600 3998700 7261400 3262600 3998700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3125 973 3257 16264;16265 16724;16725 16724 2 ATAAPAGAPPQPQDLEFTK SFSRFYSLKVAPKVKATAAPAGAPPQPQDL PAGAPPQPQDLEFTKLPNGLVIASLENYSP K A T T K L 5 0 0 1 0 2 1 1 0 0 1 1 0 1 4 0 2 0 0 0 0 0 19 0 1908.9581 P22695;H3BRG4;H3BSJ9;H3BUE4;H3BUI9 P22695 24 42 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 9.9675E-08 76.073 By MS/MS By matching By MS/MS 1 2 1 0.72896 0.64463 58.005 4 Median 2.0581 1.9038 NaN 1 1 Median 0.72896 0.64463 16.174 2 0 Median 0.55885 0.55083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22660000 8170600 14489000 15513000 3751800 11761000 2052000 1153000 898970 5095300 3265800 1829500 0 0 0 0 0 0 0 0 0 3126 2105 3258 16266;16267;16268;16269 16726;16727 16727 2 ATADDELSFK ______________________________ KYDFKATADDELSFKRGDILKVLNEECDQN K A T F K R 2 0 0 2 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1095.5084 P62993;J3KT38;J3QRL5 P62993 11 20 GRB2 Growth factor receptor-bound protein 2 yes no 2 0.00036244 87.308 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2445 1.1044 7.6768 4 Median 1.031 0.95645 NaN 1 0 Median 1.3314 1.1185 NaN 1 0 Median 1.1633 1.0905 NaN 1 0 Median 1.3615 1.1279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46749000 21146000 25603000 21287000 9858600 11428000 5547500 2525300 3022100 16488000 7338300 9150000 3426500 1424200 2002300 0 0 0 0 0 0 3127 2613 3259 16270;16271;16272;16273 16728;16729;16730;16731;16732;16733 16730 6 ATADDELSFKR ______________________________ YDFKATADDELSFKRGDILKVLNEECDQNW K A T K R G 2 1 0 2 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 1 1251.6095 P62993;J3KT38;J3QRL5 P62993 11 21 GRB2 Growth factor receptor-bound protein 2 yes no 3 0.0024071 38.634 By MS/MS By matching By MS/MS 1 1 1 1.4713 1.3801 9.5094 3 Median 1.1757 1.238 NaN 1 0 Median 1.4713 1.3801 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6904 1.4964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4587000 2165100 2421900 2608500 1277000 1331500 1117600 462110 655540 0 0 0 860900 426010 434890 0 0 0 0 0 0 3128 2613 3260 16274;16275;16276 16734;16735 16735 1 ATAEQISSQTGNK GAQCVIASRKMDVLKATAEQISSQTGNKVH LKATAEQISSQTGNKVHAIQCDVRDPDMVQ K A T N K V 2 0 1 0 0 2 1 1 0 1 0 1 0 0 0 2 2 0 0 0 0 0 13 0 1333.6474 Q16698;E5RJG7;E5RFV2;E5RJD2 Q16698 98 110 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.062328 24.089 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.94848 0.94057 27.429 5 Median 0.94848 0.94057 NaN 1 0 Median 1.5501 1.3168 NaN 1 0 Median 0.77227 0.75142 NaN 1 0 Median 1.67 1.4296 NaN 1 0 Median 0.85423 0.87819 NaN 1 0 Median NaN NaN NaN 0 0 Median 2405600 1184300 1221300 621700 294220 327480 479050 230510 248540 319890 194140 125750 483350 206170 277180 501600 259220 242380 0 0 0 3129 2994 3261 16277;16278;16279;16280;16281 16736;16737 16736 2 ATAEVLNIGK ______________________________ ______________________________ M A T G K K 2 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1014.571 P22234;E9PBS1 P22234 2 11 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.00036675 114.28 By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 1.1887 1.0262 23.359 8 Median 1.1114 1.0252 4.4666 4 0 Median 1.1887 0.99904 3.9306 2 0 Median 1.5308 1.4976 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7533 1.8531 NaN 1 0 Median NaN NaN NaN 0 0 Median 56175000 25320000 30854000 42374000 19674000 22700000 6802600 2883000 3919700 6693400 2646100 4047300 0 0 0 304800 117240 187560 0 0 0 3130 909 3262 16282;16283;16284;16285;16286;16287;16288;16289 16738;16739;16740;16741;16742;16743;16744 16739 6 ATAEVLNIGKK ______________________________ ______________________________ M A T K K L 2 0 1 0 0 0 1 1 0 1 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1142.6659 P22234;E9PBS1 P22234 2 12 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 7.5403E-09 149.94 By MS/MS By MS/MS By MS/MS By matching 6 4 3 1 1.3192 1.1846 52.236 14 Median 1.1829 1.1459 55.004 6 2 Median 1.3413 1.1287 16.279 4 2 Median NaN NaN NaN 0 0 Median 1.5254 1.3853 4.3911 3 0 Median 3.5713 3.8088 NaN 1 0 Median NaN NaN NaN 0 0 Median 235360000 102110000 133250000 166610000 73498000 93110000 58733000 25563000 33170000 0 0 0 6802000 2457600 4344400 3216400 593440 2622900 0 0 0 3131 909 3263 16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303 16745;16746;16747;16748;16749;16750;16751;16752;16753;16754;16755;16756;16757;16758 16753 13 ATAFNEQVDK KLFSLELVDESGEIRATAFNEQVDKFFPLI SGEIRATAFNEQVDKFFPLIEVNKVYYFSK R A T D K F 2 0 1 1 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 0 1121.5353 P27694 P27694 235 244 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.000715 105.52 By matching By MS/MS By matching 1 1 1 1.3209 1.1141 64.613 3 Plateau 0.99038 0.95981 NaN 1 0 Median 1.3209 1.1141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33974 0.34022 NaN 1 0 Median 7981900 3446600 4535300 982210 459930 522270 6776400 2828500 3947800 0 0 0 0 0 0 0 0 0 223350 158180 65171 3132 2156 3264 16304;16305;16306 16759 16759 1 ATAFNEQVDKFFPLIEVNK KLFSLELVDESGEIRATAFNEQVDKFFPLI NEQVDKFFPLIEVNKVYYFSKGTLKIANKQ R A T N K V 2 0 2 1 0 1 2 0 0 1 1 2 0 3 1 0 1 0 0 2 0 0 19 1 2209.1419 P27694 P27694 235 253 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 3 0.0090161 23.1 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0267 1.0937 20.413 4 Median 0.78467 0.74321 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97253 1.0978 NaN 1 0 Median 1.1802 1.0897 NaN 1 0 Median 1.0838 1.1561 NaN 1 0 Median NaN NaN NaN 0 0 Median 9691000 4802900 4888100 3546100 1810400 1735600 0 0 0 3998400 1980700 2017800 152360 61753 90612 1994200 950030 1044100 0 0 0 3133 2156 3265 16307;16308;16309;16310 16760;16761;16762;16763;16764 16763 5 ATAGAYIASQTVK AFKFRHGVIVAADSRATAGAYIASQTVKKV SRATAGAYIASQTVKKVIEINPYLLGTMAG R A T V K K 4 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 2 0 1 1 0 0 13 0 1279.6772 P28074;H0YJM8 P28074 79 91 PSMB5 Proteasome subunit beta type-5 yes no 2 3.5902E-25 152.07 By MS/MS By MS/MS By MS/MS 4 4 1 1.1844 1.0332 58.444 8 Median 5.2406 4.7924 95.879 3 1 Plateau 1.1844 1.0014 30.296 4 1 Median 1.1347 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 356950000 82766000 274180000 289240000 60203000 229040000 48671000 13966000 34705000 19040000 8597300 10442000 0 0 0 0 0 0 0 0 0 3134 2162 3266 16311;16312;16313;16314;16315;16316;16317;16318;16319 16765;16766;16767;16768;16769;16770;16771;16772;16773 16766 9 ATAGAYIASQTVKK AFKFRHGVIVAADSRATAGAYIASQTVKKV RATAGAYIASQTVKKVIEINPYLLGTMAGG R A T K K V 4 0 0 0 0 1 0 1 0 1 0 2 0 0 0 1 2 0 1 1 0 0 14 1 1407.7722 P28074;H0YJM8 P28074 79 92 PSMB5 Proteasome subunit beta type-5 yes no 2;3 3.8635E-06 96.229 By MS/MS By MS/MS By MS/MS 3 6 2 1.1687 1.1784 24.088 11 Plateau 1.1686 1.1845 28.233 3 0 Plateau 1.235 1.1123 22.353 6 0 Median 1.2349 1.2393 8.8248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33040000 15126000 17914000 16880000 7883000 8996900 10369000 4685700 5683200 5791100 2557300 3233800 0 0 0 0 0 0 0 0 0 3135 2162 3267 16320;16321;16322;16323;16324;16325;16326;16327;16328;16329;16330 16774;16775;16776;16777;16778;16779;16780;16781;16782;16783;16784;16785 16774 12 ATAGDTHLGGEDFDNR DVSILTIDDGIFEVKATAGDTHLGGEDFDN TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK K A T N R L 2 1 1 3 0 0 1 3 1 0 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1674.7234 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;P48741;Q53FA3;P34931 A0A0G2JIW1 222 237 HSPA1B;HSPA1A;HSPA6;HSPA7;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like no no 2;3 1.1564E-139 293.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 9 7 8 5 8 1.2975 1.1545 19.608 44 Median 1.3739 1.2699 22.964 7 0 Median 1.2675 1.0806 19.243 9 0 Median 1.3439 1.3207 10.996 7 0 Median 1.2381 1.0522 7.6636 8 1 Median 1.3867 1.4018 21.786 5 0 Median 1.3076 1.1141 12.259 8 0 Median 3565600000 1479900000 2085800000 1373600000 550620000 822960000 849030000 363470000 485560000 552460000 228950000 323510000 554910000 239760000 315150000 164100000 67406000 96693000 71571000 29649000 41922000 3136 278;2229;2035 3268 16331;16332;16333;16334;16335;16336;16337;16338;16339;16340;16341;16342;16343;16344;16345;16346;16347;16348;16349;16350;16351;16352;16353;16354;16355;16356;16357;16358;16359;16360;16361;16362;16363;16364;16365;16366;16367;16368;16369;16370;16371;16372;16373;16374 16786;16787;16788;16789;16790;16791;16792;16793;16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825;16826;16827;16828;16829;16830;16831;16832;16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846;16847;16848;16849;16850;16851;16852;16853 16794 68 ATAPQTQHVSPMR EARLNVLEKSSPGHRATAPQTQHVSPMRQV HRATAPQTQHVSPMRQVEPPAKKPATPAED R A T M R Q 2 1 0 0 0 2 0 0 1 0 0 0 1 0 2 1 2 0 0 1 0 0 13 0 1422.7038 E9PL71;E9PRY8;A0A087X1X7;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PK06 P29692 124 136 EEF1D Elongation factor 1-delta no no 2;3 2.1035E-07 147.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 7 7 1 1 0.97205 0.82327 48.476 24 Median 0.86314 0.8256 13.107 5 0 Median 1.1192 0.931 7.2611 3 3 Plateau 1.0429 1.0248 13.09 7 0 Median 0.9475 0.77006 36.099 7 1 Median 0.16752 0.16892 NaN 1 1 Median 0.31514 0.25559 NaN 1 1 Median 308390000 161880000 146520000 17875000 9234900 8639800 14732000 6932300 7799400 57210000 26328000 30882000 193460000 99497000 93966000 18473000 15131000 3342300 6638900 4753400 1885500 3137 985;2174;957 3269;3270 16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386;16387;16388;16389;16390;16391;16392;16393;16394;16395;16396;16397;16398 16854;16855;16856;16857;16858;16859;16860;16861;16862;16863;16864;16865;16866;16867;16868;16869;16870;16871;16872;16873;16874;16875;16876 16867 337 23 ATAPVPTVGEGYGYGHESELSQASAAAR ASTSYYGRDRSPLRRATAPVPTVGEGYGYG YGHESELSQASAAARNSLYDMARYEREQYA R A T A R N 6 1 0 0 0 1 3 4 1 0 1 0 0 0 2 3 2 0 2 2 0 0 28 0 2775.31 Q9BWF3;E9PB51 Q9BWF3 314 341 RBM4 RNA-binding protein 4 yes no 3 1.5484E-58 139.4 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 2 4 2 0.70909 0.67667 38.557 14 Median 0.66558 0.66496 NaN 1 0 Median 0.99378 0.83792 NaN 1 0 Median 0.70909 0.70213 10.337 4 0 Median 0.40406 0.35346 84.154 2 0 Median 0.69672 0.71713 24.488 4 0 Median 0.68063 0.56086 10.081 2 0 Median 339310000 181620000 157690000 19020000 10935000 8085600 326970 168450 158530 257960000 135230000 122740000 6616700 3912000 2704700 53812000 30461000 23350000 1571100 915940 655210 3138 3870 3271 16399;16400;16401;16402;16403;16404;16405;16406;16407;16408;16409;16410;16411;16412 16877;16878;16879;16880;16881;16882;16883;16884;16885;16886;16887 16880 11 ATAPVQSEVLVMQSEYR HPPEEEVHYHLPVARATAPVQSEVLVMQSE APVQSEVLVMQSEYRLHPYTVPRDVRIMVH R A T Y R L 2 1 0 0 0 2 2 0 0 0 1 0 1 0 1 2 1 0 1 3 0 0 17 0 1906.9459 Q96T58 Q96T58 3169 3185 SPEN Msx2-interacting protein yes yes 2 2.3364E-10 101.6 By MS/MS By matching By MS/MS 1 1 1 0.69456 0.77337 15.126 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76196 0.81323 NaN 1 0 Median 0.69456 0.60107 NaN 1 0 Median 0.67237 0.70608 NaN 1 0 Median NaN NaN NaN 0 0 Median 10275000 5622200 4653000 0 0 0 0 0 0 6277800 3406100 2871700 147480 80459 67025 3849900 2135600 1714300 0 0 0 3139 3741 3272 16413;16414;16415 16888;16889;16890 16888 3 ATAPYNYSYIFK ______________________________ ______________________________ M A T F K Y 2 0 1 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 3 0 0 0 12 0 1436.6976 P61106;X6RFL8 P61106 2 13 RAB14 Ras-related protein Rab-14 yes no 2 0.0044627 43.77 By MS/MS By matching By matching 1 1 1 0.97276 0.90614 11.173 3 Median 0.97276 0.90614 NaN 1 0 Median 1.3119 1.0924 NaN 1 0 Median 0.94288 0.89486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20035000 9903000 10132000 15375000 7591000 7784000 717420 287140 430280 3942400 2024900 1917500 0 0 0 0 0 0 0 0 0 3140 2545 3273 16416;16417;16418 16891 16891 1 ATATISAKPQITNPK RPKADDTSAATIEKKATATISAKPQITNPK ATATISAKPQITNPKAEITRFVPTALRVRR K A T P K A 3 0 1 0 0 1 0 0 0 2 0 2 0 0 2 1 3 0 0 0 0 0 15 1 1539.8621 Q9Y2W2 Q9Y2W2 558 572 WBP11 WW domain-binding protein 11 yes yes 2;3 0.00017453 69.979 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 0.84785 0.87006 8.6455 10 Median 0.81551 0.84506 NaN 1 0 Median 1.0648 1.0292 NaN 1 0 Median 0.72739 0.83162 5.2466 2 0 Median 0.94547 0.92363 7.3071 2 0 Median 0.82362 0.89062 7.6379 2 0 Median 0.91348 0.82669 8.9463 2 0 Median 18149000 9947200 8201600 1298300 778400 519890 1036800 446570 590230 5637300 3239600 2397700 3236000 1557100 1679000 5037500 2828100 2209400 1902900 1097500 805430 3141 4394 3274 16419;16420;16421;16422;16423;16424;16425;16426;16427;16428 16892;16893;16894;16895;16896;16897;16898;16899;16900;16901 16896 10 ATATPVPPR ______________________________ ______________________________ M A T P R M 2 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 9 0 908.50797 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 2 10 LMNB1 Lamin-B1 yes no 2 0.00062326 109.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 0.60795 0.52201 21.408 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61939 0.6333 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46244 0.46528 7.5963 2 0 Median 0.75363 0.62759 26.051 2 0 Median 52005000 31343000 20661000 0 0 0 0 0 0 7921000 5097300 2823700 0 0 0 28216000 17482000 10733000 15868000 8763800 7104300 3142 2084 3275 16429;16430;16431;16432;16433;16434;16435 16902;16903;16904;16905;16906;16907;16908;16909;16910 16903 9 ATATQLLQHPFVR TDFVKQCLVKSPEQRATATQLLQHPFVRSA QRATATQLLQHPFVRSAKGVSILRDLINEA R A T V R S 2 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 2 0 0 1 0 0 13 0 1480.815 Q13043;F5H5B4 Q13043 270 282 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 3 0.00050802 65.395 By MS/MS 1 0.58644 0.5796 NaN 1 Median 0.58644 0.5796 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4302200 2714300 1588000 4302200 2714300 1588000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3143 2780 3276 16436 16911 16911 1 ATAVMPDGQFK SSGNAKIGHPAPNFKATAVMPDGQFKDISL PNFKATAVMPDGQFKDISLSDYKGKYVVFF K A T F K D 2 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 11 0 1163.5645 Q06830;A0A0A0MSI0 Q06830 17 27 PRDX1 Peroxiredoxin-1 yes no 2 0.00011244 138.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 6 3 3 2 1 1.1111 0.98629 30.59 20 Median 1.1163 1.0216 11.001 5 0 Median 1.1001 0.92456 15.588 6 1 Median 1.4522 1.3516 19.624 3 1 Plateau 1.2281 1.0183 60.307 3 0 Plateau 0.92817 0.96462 27.17 2 0 Median 1.4454 1.1807 NaN 1 0 Median 1067200000 495430000 571760000 794030000 371990000 422030000 148810000 69475000 79333000 112130000 48168000 63960000 9297600 4303500 4994100 2529100 1289900 1239300 401900 202670 199230 3144 2728 3277;3278 16437;16438;16439;16440;16441;16442;16443;16444;16445;16446;16447;16448;16449;16450;16451;16452;16453;16454;16455;16456 16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928;16929;16930;16931;16932;16933;16934;16935;16936;16937;16938 16929 1410 27 ATAVMPDGQFKDISLSDYK SSGNAKIGHPAPNFKATAVMPDGQFKDISL MPDGQFKDISLSDYKGKYVVFFFYPLDFTF K A T Y K G 2 0 0 3 0 1 0 1 0 1 1 2 1 1 1 2 1 0 1 1 0 0 19 1 2085.0089 Q06830;A0A0A0MSI0 Q06830 17 35 PRDX1 Peroxiredoxin-1 yes no 2;3 1.8298E-08 80.585 By MS/MS By matching By MS/MS By matching 4 4 2 2 1.1107 1.0735 8.2322 12 Median 1.0754 1.0899 3.6678 4 0 Median 1.1417 1.0309 7.6207 4 0 Median 1.1787 1.176 7.399 2 0 Median 1.0692 0.96107 5.7079 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 218040000 99529000 118520000 195810000 89312000 106490000 9363800 4130800 5233100 11882000 5597500 6284800 991970 489240 502730 0 0 0 0 0 0 3145 2728 3279;3280 16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468 16939;16940;16941;16942;16943;16944;16945;16946;16947 16941 1410 9 ATAVMPDGQFKDISLSDYKGK SSGNAKIGHPAPNFKATAVMPDGQFKDISL DGQFKDISLSDYKGKYVVFFFYPLDFTFVC K A T G K Y 2 0 0 3 0 1 0 2 0 1 1 3 1 1 1 2 1 0 1 1 0 0 21 2 2270.1253 Q06830;A0A0A0MSI0 Q06830 17 37 PRDX1 Peroxiredoxin-1 yes no 3;4 2.6094E-14 92.932 By MS/MS By matching By matching 2 2 1 0.98802 1.0434 23.432 5 Median 1.1282 1.1914 18.762 2 0 Median 0.98256 0.96149 16.445 2 0 Median NaN NaN NaN 0 0 Median 0.8015 0.73698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133260000 56726000 76532000 128050000 54078000 73972000 5020400 2548700 2471700 0 0 0 188660 99755 88908 0 0 0 0 0 0 3146 2728 3281 16469;16470;16471;16472;16473 16948;16949;16950;16951 16949 4 ATAVVDGAFK ASGNARIGKPAPDFKATAVVDGAFKEVKLS APDFKATAVVDGAFKEVKLSDYKGKYVVLF K A T F K E 3 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 977.5182 P32119;A6NIW5 P32119 17 26 PRDX2 Peroxiredoxin-2 yes no 2 0.00039551 114.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1 0.96863 0.84164 14.879 9 Median 0.96863 0.89074 13.146 3 0 Plateau 1.1533 0.95585 18.086 3 1 Median 1.1077 1.0389 NaN 1 0 Median 0.99409 0.8232 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92205 0.84164 NaN 1 0 Median 265200000 123570000 141630000 144560000 71568000 72994000 72738000 32869000 39869000 32286000 14483000 17803000 2449500 1185100 1264400 0 0 0 13162000 3465700 9696800 3147 2215 3282 16474;16475;16476;16477;16478;16479;16480;16481;16482;16483 16952;16953;16954;16955;16956;16957;16958;16959;16960;16961;16962;16963;16964 16959 13 ATAVVDGAFKEVK ASGNARIGKPAPDFKATAVVDGAFKEVKLS FKATAVVDGAFKEVKLSDYKGKYVVLFFYP K A T V K L 3 0 0 1 0 0 1 1 0 0 0 2 0 1 0 0 1 0 0 3 0 0 13 1 1333.7242 P32119;A6NIW5 P32119 17 29 PRDX2 Peroxiredoxin-2 yes no 2;3 3.7782E-10 150.04 By MS/MS By MS/MS By MS/MS By MS/MS 8 5 2 2 1.0828 1.0276 58.045 16 Median 1.0296 0.97502 78.448 7 1 Median 1.1484 1.0507 24.299 5 0 Median 0.77298 0.76926 15.024 2 0 Median 1.5572 1.4022 45.407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 652970000 305760000 347210000 514080000 241140000 272940000 98821000 44672000 54148000 32822000 17048000 15774000 7249500 2894300 4355300 0 0 0 0 0 0 3148 2215 3283 16484;16485;16486;16487;16488;16489;16490;16491;16492;16493;16494;16495;16496;16497;16498;16499;16500 16965;16966;16967;16968;16969;16970;16971;16972;16973;16974;16975;16976;16977;16978;16979;16980;16981;16982;16983;16984;16985 16973 21 ATCAPQHGAPGPGPADASK SLHETSSVFVDSLTKATCAPQHGAPGPGPA PQHGAPGPGPADASKVVAKGLGLSKAYVGQ K A T S K V 5 0 0 1 1 1 0 3 1 0 0 1 0 0 4 1 1 0 0 0 0 0 19 0 1788.8213 P21333;Q60FE5;A0A087WWY3 P21333 2541 2559 FLNA Filamin-A no no 3 0.0022583 26.237 By MS/MS 1 0.54889 0.47885 NaN 1 Median NaN NaN NaN 0 0 Median 0.54889 0.47885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2924200 1776100 1148000 0 0 0 2924200 1776100 1148000 0 0 0 0 0 0 0 0 0 0 0 0 3149 2088;3120 3284 16501 16986 16986 1 ATCIGNNSAAAVSMLK QLYQSDPSGNYGGWKATCIGNNSAAAVSML TCIGNNSAAAVSMLKQDYKEGEMTLKSALA K A T L K Q 4 0 2 0 1 0 0 1 0 1 1 1 1 0 0 2 1 0 0 1 0 0 16 0 1606.7807 P25789;H0YMZ1;H0YN18;H0YL69;H0YMI6;H0YMA1;H0YKT8;H0YKS0 P25789 161 176 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type yes no 2 1.4148E-05 84.718 By MS/MS By MS/MS 1 1 1.0118 0.8904 3.7269 2 Median 0.99308 0.91418 NaN 1 0 Median 1.0309 0.86724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17051000 8550700 8499900 12657000 6448600 6208000 4394100 2102100 2292000 0 0 0 0 0 0 0 0 0 0 0 0 3150 2138 3285 16502;16503 16987;16988;16989 16987 3 ATDAEADVASLNR ______________________________ ______________________________ K A T N R R 4 1 1 2 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 0 1331.6317 H0YKX5 H0YKX5 2 14 TPM1 no no 2 8.3013E-07 126.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.83949 0.76136 22.161 4 Median 0.95735 0.912 NaN 1 0 Median 0.77147 0.64447 NaN 1 0 Median 0.91352 0.89945 NaN 1 0 Median 0.71348 0.59566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16578000 8099700 8478000 4106000 1675100 2430900 3713700 2088400 1625300 7044200 3331400 3712800 1713800 1004700 709060 0 0 0 0 0 0 + 3151 1193 3286 16504;16505;16506;16507 16990;16991;16992;16993;16994;16995;16996 16995 7 ATDAEADVASLNRR ______________________________ KATDAEADVASLNRRIQLVEEELDRAQERL K A T R R I 4 2 1 2 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 1 1487.7328 H0YKX5 H0YKX5 2 15 TPM1 no no 3 0.066349 8.3844 By MS/MS By matching 1 1 0.84281 0.83898 37.071 2 Median 1.0129 1.0904 NaN 1 0 Median 0.70131 0.64552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2951100 1556400 1394800 2530700 1421000 1109700 420380 135330 285060 0 0 0 0 0 0 0 0 0 0 0 0 + 3152 1193 3287 16508;16509 16997 16997 1 ATDAMAHVAGFTVAHDVSAR VELAVVIGKKGKHIKATDAMAHVAGFTVAH AHVAGFTVAHDVSARDWQMRRNGKQWLLGK K A T A R D 6 1 0 2 0 0 0 1 2 0 0 0 1 1 0 1 2 0 0 3 0 0 20 0 2025.9691 Q6P2I3;Q96GK7 Q96GK7 175 194 FAHD2B;FAHD2A Fumarylacetoacetate hydrolase domain-containing protein 2B;Fumarylacetoacetate hydrolase domain-containing protein 2A no no 3;4 3.7462E-19 110.6 By MS/MS By MS/MS 4 1 0.94141 0.88055 11.997 5 Median 0.9288 0.86911 8.5781 4 0 Median 1.2466 1.0374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101710000 53403000 48305000 95452000 50459000 44993000 6255800 2943800 3311900 0 0 0 0 0 0 0 0 0 0 0 0 3153 3658;3156 3288;3289 16510;16511;16512;16513;16514 16998;16999;17000;17001;17002;17003;17004;17005 17001 1667 8 ATDDLINVTGR PDYLEYDIEWLTILRATDDLINVTGRLWNM TILRATDDLINVTGRLWNMPENNGLHARWD R A T G R L 1 1 1 2 0 0 0 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 11 0 1173.599 Q9UK59 Q9UK59 291 301 DBR1 Lariat debranching enzyme yes yes 2 0.00016976 98.044 By MS/MS By MS/MS By MS/MS 2 1 1 1.1482 1.1033 18.417 3 Median 1.1482 1.1502 NaN 1 0 Median 1.2749 1.1033 NaN 1 0 Median 0.80385 0.8205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16765000 9331800 7433000 1430700 624380 806300 6091700 3178100 2913700 9242400 5529300 3713100 0 0 0 0 0 0 0 0 0 3154 4306 3290 16515;16516;16517;16518 17006;17007;17008;17009 17006 4 ATDFVADR KPITIGRHAHGDQYKATDFVADRAGTFKMV AHGDQYKATDFVADRAGTFKMVFTPKDGSG K A T D R A 2 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 8 0 893.4243 P48735;H0YL11 P48735 181 188 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 2 0.0095084 60.682 By MS/MS By matching By matching 1 1 1 0.73754 0.7233 42.549 3 Median NaN NaN NaN 0 0 Median 1.7005 1.4616 NaN 1 0 Median 0.73754 0.7233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63745 0.67916 NaN 1 0 Median NaN NaN NaN 0 0 Median 4147200 1863700 2283600 0 0 0 2314300 822880 1491400 829100 452740 376360 0 0 0 1003800 588040 415810 0 0 0 3155 2367 3291 16519;16520;16521 17010 17010 1 ATDFVVPGPGK KPIIIGRHAYGDQYRATDFVVPGPGKVEIT DQYRATDFVVPGPGKVEITYTPSDGTQKVT R A T G K V 1 0 0 1 0 0 0 2 0 0 0 1 0 1 2 0 1 0 0 2 0 0 11 0 1086.571 O75874;C9J4N6 O75874 141 151 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes no 2 0.0076315 60.59 By MS/MS By MS/MS 1 1 1.1623 1.0395 32.587 2 Median 0.87977 0.82556 NaN 1 1 Median 1.5355 1.3089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15604000 7563400 8040300 6663100 3780200 2882900 8940700 3783300 5157400 0 0 0 0 0 0 0 0 0 0 0 0 3156 1701 3292 16522;16523 17011;17012 17012 2 ATDTINSQGQFPSYLETVTK MRLKLFSILSTVLLRATDTINSQGQFPSYL NSQGQFPSYLETVTKDILAPNLQWHAGRTA R A T T K D 1 0 1 1 0 2 1 1 0 1 1 1 0 1 1 2 4 0 1 1 0 0 20 0 2199.0695 Q86Y56;H0Y650;E9PGY2 Q86Y56 636 655 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.0015962 30.059 By MS/MS 1 0.75774 0.73481 NaN 1 Median 0.75774 0.73481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3068600 1745100 1323400 3068600 1745100 1323400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3157 3305 3293 16524 17013;17014 17014 2 ATDTLPASIPHVIAR IIVIHPGSTTLRIGRATDTLPASIPHVIAR ATDTLPASIPHVIARRHKQQGQPLYKDSWL R A T A R R 3 1 0 1 0 0 0 0 1 2 1 0 0 0 2 1 2 0 0 1 0 0 15 0 1560.8624 Q9H981 Q9H981 63 77 ACTR8 Actin-related protein 8 yes yes 3 0.0019432 45.864 By MS/MS 1 0.50156 0.51757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50156 0.51757 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6530200 4140000 2390200 0 0 0 0 0 0 6530200 4140000 2390200 0 0 0 0 0 0 0 0 0 3158 3994 3294 16525 17015 17015 1 ATDTSQGELVHPK ______________________________ ______________________________ M A T P K A 1 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1381.6838 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 2 14 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 6.0642E-07 133.89 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 2 0.92614 0.8741 75.039 10 Median 0.86508 0.87371 NaN 1 0 Median 1.2205 1.0829 NaN 1 0 Median 0.67273 0.67207 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87924 0.87539 106.65 5 3 Median 1.0098 0.83787 6.0509 2 1 Median 91077000 41554000 49523000 1145900 618530 527420 1672200 745670 926530 22384000 13744000 8640100 0 0 0 60750000 23883000 36867000 5124500 2562800 2561700 3159 3075 3295 16526;16527;16528;16529;16530;16531;16532;16533;16534;16535 17016;17017;17018;17019;17020;17021;17022;17023;17024;17025 17023 10 ATDVMIAGK NLYGCRESLIDGIKRATDVMIAGKVAVVAG IDGIKRATDVMIAGKVAVVAGYGDVGKGCA R A T G K V 2 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 9 0 904.4688 P23526 P23526 206 214 AHCY Adenosylhomocysteinase yes yes 2 0.00098766 86.833 By MS/MS By MS/MS By MS/MS 4 4 1 1.4198 1.2775 27.454 8 Median 1.4821 1.4086 19.948 4 0 Median 1.4666 1.2446 33.448 3 0 Plateau 1.4139 1.4263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23497000 9729200 13768000 11666000 4864300 6801200 9941800 4098300 5843500 1889400 766620 1122800 0 0 0 0 0 0 0 0 0 3160 2116 3296;3297 16536;16537;16538;16539;16540;16541;16542;16543;16544 17026;17027;17028;17029;17030;17031;17032;17033 17030 883 8 ATEDGEEDEEMIESIENLEDLKGHSVR EDEERPARKRRQVERATEDGEEDEEMIESI ESIENLEDLKGHSVREWVSMAGPRLEIHHR R A T V R E 1 1 1 3 0 0 8 2 1 2 2 1 1 0 0 2 1 0 0 1 0 0 27 1 3073.367 P49736;H0Y8E6 P49736 157 183 MCM2 DNA replication licensing factor MCM2 yes no 3 0.0043774 23.917 By MS/MS 1 0.6426 0.66619 NaN 1 Median 0.6426 0.66619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2004100 1186100 817990 2004100 1186100 817990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3161 2393 3298 16545 17034 17034 1 ATEDGTPYDPYK KQRLSRKKREAEAMKATEDGTPYDPYKALW AMKATEDGTPYDPYKALWFERKKDPVTKEL K A T Y K A 1 0 0 2 0 0 1 1 0 0 0 1 0 0 2 0 2 0 2 0 0 0 12 0 1355.5881 P22059 P22059 757 768 OSBP Oxysterol-binding protein 1 yes yes 2 0.0041475 44.309 By matching By MS/MS 1 1 0.8286 0.77679 18.882 2 Median 0.68493 0.67971 NaN 1 0 Median 1.0024 0.88775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4341400 2520100 1821300 2448800 1518500 930320 1892500 1001600 890990 0 0 0 0 0 0 0 0 0 0 0 0 3162 2096 3299 16546;16547 17035;17036 17036 2 ATEEPEDVR DPYPHAEPQQATTPKATEEPEDVRSEAALD QATTPKATEEPEDVRSEAALDQEQITAAYS K A T V R S 1 1 0 1 0 0 3 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 9 0 1044.4724 E7EPN9;Q9Y520 E7EPN9 827 835 PRRC2C Protein PRRC2C yes no 2 0.030308 49.418 By MS/MS 1 1.2114 1.037 NaN 1 Median NaN NaN NaN 0 0 Median 1.2114 1.037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2155000 969910 1185100 0 0 0 2155000 969910 1185100 0 0 0 0 0 0 0 0 0 0 0 0 3163 872 3300 16548 17037 17037 1 ATEGMVVADK GVVYKDGIVLGADTRATEGMVVADKNCSKI GADTRATEGMVVADKNCSKIHFISPNIYCC R A T D K N 2 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 10 0 1019.4957 Q99436;Q5TBG5 Q99436 63 72 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type yes no 2 0.0093173 45.368 By MS/MS By MS/MS 1 2 1.27 1.0762 18.857 3 Median 1.4852 1.3958 NaN 1 0 Median 1.192 1.0204 7.5374 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7637200 3002600 4634600 3172500 1052200 2120300 4464700 1950400 2514300 0 0 0 0 0 0 0 0 0 0 0 0 3164 3744 3301 16549;16550;16551 17038;17039 17039 2 ATEISTAVVQR STISSSSSTKGIKRKATEISTAVVQRSATI IKRKATEISTAVVQRSATIGSSPVLYSQSA K A T Q R S 2 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 2 0 0 2 0 0 11 0 1173.6354 Q8N3X1 Q8N3X1 793 803 FNBP4 Formin-binding protein 4 yes yes 2 0.0034745 72.643 By MS/MS 1 0.52679 0.57938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52679 0.57938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6775800 4571600 2204200 0 0 0 0 0 0 6775800 4571600 2204200 0 0 0 0 0 0 0 0 0 3165 3370 3302 16552 17040 17040 1 ATEKDKVEIYK LKNSFRGTIRKEDVRATEKDKVEIYKSFRP EDVRATEKDKVEIYKSFRPGDIVLAKVISL R A T Y K S 1 0 0 1 0 0 2 0 0 1 0 3 0 0 0 0 1 0 1 1 0 0 11 2 1322.7082 Q9Y3B2;B1AMU3 Q9Y3B2 110 120 EXOSC1 Exosome complex component CSL4 yes no 3 0.0042396 37.613 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1479 1.1693 14.279 4 Median 0.91183 0.98746 NaN 1 0 Median 1.4988 1.3524 NaN 1 0 Median 1.1182 1.2616 NaN 1 0 Median 1.1785 1.0836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8076600 3777200 4299500 89712 34836 54876 383390 130980 252410 6831500 3275100 3556400 772030 336240 435790 0 0 0 0 0 0 3166 4414 3303 16553;16554;16555;16556 17041;17042;17043 17042 3 ATEMLIFGK GCSSYTFPKIMSPAKATEMLIFGKKLTAGE IMSPAKATEMLIFGKKLTAGEACAQGLVTE K A T G K K 1 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 0 0 0 0 9 0 1008.5314 A0A0C4DGA2;O75521 A0A0C4DGA2 266 274 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 2 0.019657 39.646 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0026 0.96164 22.792 4 Median 0.94999 0.88749 NaN 1 0 Median 1.0582 0.91248 NaN 1 0 Median 0.9393 1.0134 NaN 1 0 Median 1.722 1.4556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12467000 6358600 6108200 6167700 3259200 2908500 2713400 1307000 1406500 3276100 1675900 1600200 309680 116530 193140 0 0 0 0 0 0 3167 237 3304 16557;16558;16559;16560 17044;17045;17046 17044 3 ATEMVEVGADDDEGGAER FHVKKIREGQVEVLKATEMVEVGADDDEGG MVEVGADDDEGGAERGEAGDLRRGSSPDVH K A T E R G 3 1 0 3 0 0 4 3 0 0 0 0 1 0 0 0 1 0 0 2 0 0 18 0 1849.7636 Q6NZI2 Q6NZI2 338 355 PTRF Polymerase I and transcript release factor yes yes 2 0.0013073 36.284 By MS/MS 1 0.92018 0.79574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92018 0.79574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 921160 442310 478850 0 0 0 0 0 0 0 0 0 921160 442310 478850 0 0 0 0 0 0 3168 3147 3305 16561 17047 17047 1 ATENDIANFFSPLNPIR FHGGHFVHMRGLPFRATENDIANFFSPLNP ENDIANFFSPLNPIRVHIDIGADGRATGEA R A T I R V 2 1 3 1 0 0 1 0 0 2 1 0 0 2 2 1 1 0 0 0 0 0 17 0 1917.9585 P31942 P31942 206 222 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 9.8794E-108 269.44 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 3 4 0.83394 0.73357 8.0674 12 Median 0.89301 0.83724 NaN 1 0 Median 0.83394 0.70035 1.1154 2 0 Median 0.68324 0.66502 NaN 1 0 Median 0.89777 0.75223 NaN 1 0 Median 0.70977 0.71667 4.5186 3 0 Median 0.92513 0.75551 10.73 4 0 Median 421500000 236480000 185020000 267670 148230 119430 8306500 4329700 3976800 15558000 8866000 6691800 991310 468750 522560 386150000 217150000 169000000 10231000 5519900 4711300 3169 2208 3306 16562;16563;16564;16565;16566;16567;16568;16569;16570;16571;16572;16573 17048;17049;17050;17051;17052;17053;17054;17055;17056;17057;17058;17059;17060;17061;17062;17063;17064;17065;17066 17055 19 ATENDIYNFFSPLNPMR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPMRVHIEIGPDGRVTGEA R A T M R V 1 1 3 1 0 0 1 0 0 1 1 0 1 2 2 1 1 0 1 0 0 0 17 0 2027.9411 P55795 P55795 300 316 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2;3 2.6185E-10 100.56 By matching By MS/MS By matching By MS/MS By matching 1 6 1 5 3 0.74577 0.71561 32.877 16 Median NaN NaN NaN 0 0 Median 0.53496 0.50458 NaN 1 0 Median 0.80585 0.82141 27.08 6 0 Median 1.0971 0.96931 NaN 1 0 Median 0.68911 0.69036 40.889 5 0 Median 1.1031 0.96207 14.768 3 0 Plateau 72329000 40608000 31721000 0 0 0 681610 400020 281590 22536000 12362000 10174000 100050 40358 59696 48371000 27510000 20861000 639780 296130 343650 3170 2502 3307 16574;16575;16576;16577;16578;16579;16580;16581;16582;16583;16584;16585;16586;16587;16588;16589 17067;17068;17069;17070;17071;17072;17073;17074;17075;17076 17074 10 ATENDIYNFFSPLNPVR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA R A T V R V 1 1 3 1 0 0 1 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 17 0 1995.969 P52597;P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7 P31943 300 316 HNRNPF;HNRNPH1 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed no no 2;3 8.4265E-132 244.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 12 5 4 10 0.88303 0.7884 11.064 42 Median 0.86221 0.87587 17.835 5 0 Median 0.89958 0.78214 11.815 6 0 Median 0.762 0.79686 13.035 12 0 Median 0.90389 0.78919 3.9944 5 0 Median 0.75056 0.75371 2.5067 4 1 Median 0.94459 0.77845 5.6518 10 0 Median 739640000 423640000 316010000 24427000 12761000 11665000 11418000 5749500 5668300 193670000 106960000 86711000 11859000 5825200 6033500 476960000 281540000 195420000 21309000 10802000 10507000 3171 1136;2452 3308 16590;16591;16592;16593;16594;16595;16596;16597;16598;16599;16600;16601;16602;16603;16604;16605;16606;16607;16608;16609;16610;16611;16612;16613;16614;16615;16616;16617;16618;16619;16620;16621;16622;16623;16624;16625;16626;16627;16628;16629;16630;16631 17077;17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088;17089;17090;17091;17092;17093;17094;17095;17096;17097;17098;17099;17100;17101;17102;17103;17104;17105;17106;17107;17108;17109;17110;17111;17112;17113;17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125;17126;17127;17128;17129;17130;17131;17132;17133 17107 57 ATENPEQVASEGLPEPVLR TGSQGLSSLAEEAARATENPEQVASEGLPE PEQVASEGLPEPVLRKVELPVPTHRRPVQA R A T L R K 2 1 1 0 0 1 4 1 0 0 2 0 0 0 3 1 1 0 0 2 0 0 19 0 2035.0222 K7ES61;Q9BYD3;K7ELQ0;X6RAY8;K7EKI4;K7ELF1 K7ES61 31 49 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2 8.006E-07 60.628 By matching By MS/MS By matching 1 1 1 0.71235 0.63795 19.344 3 Median NaN NaN NaN 0 0 Median 0.71235 0.6151 NaN 1 0 Median 0.64985 0.63795 NaN 1 0 Median 1.0371 0.87444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2969000 1814700 1154300 0 0 0 199590 115760 83823 2567400 1602500 964900 202040 96491 105550 0 0 0 0 0 0 3172 1401 3309 16632;16633;16634 17134 17134 1 ATEPPSPDAGELSLASR SQARRTRGTKALGSKATEPPSPDAGELSLA EPPSPDAGELSLASRLVQQGLLTPDMLKQL K A T S R L 3 1 0 1 0 0 2 1 0 0 2 0 0 0 3 3 1 0 0 0 0 0 17 0 1696.8268 Q8IYB8 Q8IYB8 720 736 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 2.3001E-05 71.241 By MS/MS By matching By MS/MS 1 1 1 0.8104 0.70348 5.5872 3 Median 0.68204 0.65632 NaN 1 0 Median 0.8104 0.73304 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81661 0.70348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6012400 2782300 3230200 4243000 1812000 2431000 375520 187890 187630 0 0 0 1393900 782390 611550 0 0 0 0 0 0 3173 3342 3310 16635;16636;16637 17135;17136 17135 2 ATEPVIAFYEK DNEETIKKRLETYYKATEPVIAFYEKRGIV TYYKATEPVIAFYEKRGIVRKVNAEGSVDS K A T E K R 2 0 0 0 0 0 2 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 11 0 1266.6496 Q5T9B7;P00568 Q5T9B7 172 182 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.024935 53.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3174 1825 3311 16638 17137 17137 1 ATEPVIAFYEKR DNEETIKKRLETYYKATEPVIAFYEKRGIV YYKATEPVIAFYEKRGIVRKVNAEGSVDSV K A T K R G 2 1 0 0 0 0 2 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 12 1 1422.7507 Q5T9B7;P00568 Q5T9B7 172 183 AK1 Adenylate kinase isoenzyme 1 yes no 3 4.5728E-05 85.845 By MS/MS By matching By MS/MS 1 1 1 1.031 0.98551 6.2414 3 Median 0.94556 0.98551 NaN 1 0 Median 1.031 0.96012 NaN 1 0 Median 1.0506 1.0812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29017000 15094000 13923000 23400000 12225000 11175000 3150500 1661500 1489000 2466500 1207700 1258900 0 0 0 0 0 0 0 0 0 3175 1825 3312 16639;16640;16641 17138;17139;17140 17139 3 ATEQSLDPPIEEEHQLR NEAVAALCGDQEIMKATEQSLDPPIEEEHQ EQSLDPPIEEEHQLRNSIEKLRARLEADEK K A T L R N 1 1 0 1 0 2 4 0 1 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1990.9596 P49454 P49454 2284 2300 CENPF Centromere protein F yes yes 3 5.7906E-06 62.165 By MS/MS By matching 1 1 0.90043 0.86228 6.2621 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78261 0.82494 NaN 1 0 Median 1.036 0.90132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13401000 7280800 6119900 0 0 0 0 0 0 12533000 6871500 5661500 867840 409380 458460 0 0 0 0 0 0 3176 2383 3313 16642;16643 17141;17142 17142 2 ATESGAQSAPLPMEGVDISPK ______________________________ QSAPLPMEGVDISPKQDEGVLKVIKREGTG K A T P K Q 3 0 0 1 0 1 2 2 0 1 1 1 1 0 3 3 1 0 0 1 0 0 21 0 2084.0096 Q02790;F5H120 Q02790 8 28 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2;3 2.7776E-11 65.805 By MS/MS By matching By MS/MS By matching 2 2 3 1 0.64253 0.58288 23.23 8 Median 0.65679 0.61758 8.0782 2 0 Median 0.48155 0.41674 35.416 2 0 Median 0.65189 0.63752 14.68 3 2 Median 0.67507 0.58246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61985000 36431000 25554000 35583000 20501000 15081000 3187200 1952100 1235000 22080000 13327000 8752300 1135600 650120 485480 0 0 0 0 0 0 3177 2701 3314 16644;16645;16646;16647;16648;16649;16650;16651 17143;17144;17145;17146;17147;17148;17149 17143 7 ATETSEVESLRPPR GIIDMASSTFQGIKRATETSEVESLRPPRF RATETSEVESLRPPRFFNEDGVIRPYRLRD R A T P R F 1 2 0 0 0 0 3 0 0 0 1 0 0 0 2 2 2 0 0 1 0 0 14 1 1570.7951 Q96RL7 Q96RL7 3027 3040 VPS13A Vacuolar protein sorting-associated protein 13A yes yes 3 0.0046467 45.825 By MS/MS By MS/MS 1 1 1.0516 1.1428 NaN 1 Median 1.0516 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5403400 2629600 2773900 5403400 2629600 2773900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3178 3726 3315 16652;16653 17150;17151 17151 2 ATETVELHK ______________________________ ______________________________ M A T H K L 1 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 2 0 0 1 0 0 9 0 1026.5346 P82979;F8VZQ9;F8VS12 P82979 2 10 SARNP SAP domain-containing ribonucleoprotein yes no 2 0.00012813 145.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1.0184 1.1821 14.178 10 Linear NaN NaN NaN 0 0 Median 1.0691 0.89892 NaN 1 0 Median 0.9372 0.89186 6.4565 2 0 Median 1.1563 0.9583 4.6818 2 0 Median 0.95271 0.96385 10.601 2 1 Median 1.0212 0.85117 21.412 3 1 Median 383560000 181530000 202030000 0 0 0 9374500 4420200 4954200 114010000 58185000 55821000 202010000 90218000 111790000 45295000 22436000 22860000 12869000 6267100 6602300 3179 2661 3316 16654;16655;16656;16657;16658;16659;16660;16661;16662;16663 17152;17153;17154;17155;17156;17157;17158;17159;17160;17161;17162;17163;17164;17165;17166;17167;17168 17161 17 ATEYIQYMR PRFQSAASRAQILDKATEYIQYMRRKNHTH AQILDKATEYIQYMRRKNHTHQQDIDDLKR K A T M R R 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 1 0 2 0 0 0 9 0 1173.5488 G3V5L1;P61244;Q6V3B1;G3V563;G3V2R5 G3V5L1 31 39 MAX Protein max yes no 2 0.034667 75.109 By MS/MS By matching 1 1 0.93116 0.82947 35.922 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1129 1.0693 NaN 1 0 Median 0.7791 0.64341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11303000 5722800 5579900 0 0 0 0 0 0 10280000 5150100 5130000 1022600 572680 449920 0 0 0 0 0 0 3180 1119 3317 16664;16665 17169 17169 0 ATFDAISK TSARGCTATLGNFAKATFDAISKTYSYLTP TLGNFAKATFDAISKTYSYLTPDLWKETVF K A T S K T 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 P15880;H0YEN5;E9PQD7 P15880 239 246 RPS2 40S ribosomal protein S2 yes no 2 0.0058621 73.665 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 1 2 1.1945 1.0393 27.357 12 Median 0.77154 0.69151 52.095 2 0 Median 1.2256 1.0266 14.563 3 0 Median 1.1004 1.0783 18.546 2 0 Median 1.3486 1.1242 30.881 2 0 Median 1.1641 1.1525 NaN 1 0 Median 1.3987 1.14 11.35 2 0 Median 97349000 44019000 53331000 46384000 21313000 25071000 34853000 15597000 19256000 4519200 1961300 2557900 4370600 2173700 2196900 2397600 1004900 1392700 4824600 1968200 2856400 3181 2020 3318 16666;16667;16668;16669;16670;16671;16672;16673;16674;16675;16676;16677 17170;17171;17172;17173;17174;17175;17176;17177;17178 17171 9 ATFDISLVVPK DARRAFPCWDEPAIKATFDISLVVPKDRVA PAIKATFDISLVVPKDRVALSNMNVIDRKP K A T P K D 1 0 0 1 0 0 0 0 0 1 1 1 0 1 1 1 1 0 0 2 0 0 11 0 1188.6754 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 194 204 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0048509 47.198 By matching By MS/MS 1 2 1.1218 0.94081 3.3423 3 Plateau 0.92607 0.94081 NaN 1 0 Median 1.0904 0.94934 4.6689 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19019000 9086600 9932100 465530 252750 212780 18553000 8833800 9719300 0 0 0 0 0 0 0 0 0 0 0 0 3182 960 3319 16678;16679;16680 17179;17180 17180 2 ATFISVQLKK ______________________________ ______________________________ M A T K K T 1 0 0 0 0 1 0 0 0 1 1 2 0 1 0 1 1 0 0 1 0 0 10 1 1133.6808 Q8WUM4;A0A3B3IT07;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 2 11 PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.0066 44.349 By MS/MS By matching By matching 1 1 1 1.2369 1.2965 8.5828 3 Median 1.2369 1.2965 NaN 1 0 Median 1.2039 1.1406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4778 1.3424 NaN 1 0 Median 10798000 5011700 5786400 9944400 4664100 5280300 463050 190470 272580 0 0 0 0 0 0 0 0 0 390710 157190 233520 3183 3493 3320 16681;16682;16683 17181 17181 1 ATFSEFAAK EDFKKMMEEAKFNPRATFSEFAAKHAKDSR AKFNPRATFSEFAAKHAKDSRFKAIEKMKD R A T A K H 3 0 0 0 0 0 1 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 9 0 970.476 O14776;G3V220 O14776 745 753 TCERG1 Transcription elongation regulator 1 yes no 2 0.0011692 84.498 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.2452 1.0939 8.8889 5 Median NaN NaN NaN 0 0 Median 1.1881 1.0182 NaN 1 0 Median 1.0774 1.1475 NaN 1 0 Median 1.3601 1.182 12.496 2 0 Median NaN NaN NaN 0 0 Median 1.2765 1.0939 NaN 1 0 Median 40340000 17880000 22460000 0 0 0 4546100 1899900 2646200 26591000 11837000 14754000 7486700 3399600 4087100 0 0 0 1716100 743100 972990 3184 1494 3321 16684;16685;16686;16687;16688 17182;17183;17184;17185;17186 17185 5 ATFSPIVTVEPR QPVPDEIVKKILGNKATFSPIVTVEPRRRK GNKATFSPIVTVEPRRRKFHKPITMTIPVP K A T P R R 1 1 0 0 0 0 1 0 0 1 0 0 0 1 2 1 2 0 0 2 0 0 12 0 1315.7136 Q12955;A0A087WZ65;A0A087WTF3 Q12955 1197 1208 ANK3 Ankyrin-3 yes no 2 0.0045237 64.103 By MS/MS 1 0.45615 0.50035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45615 0.50035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7100000 4910200 2189800 0 0 0 0 0 0 7100000 4910200 2189800 0 0 0 0 0 0 0 0 0 3185 2773 3322 16689 17187 17187 1 ATFVSELEAAKK ______________________________ ______________________________ M A T K K N 3 0 0 0 0 0 2 0 0 0 1 2 0 1 0 1 1 0 0 1 0 0 12 1 1292.6976 Q96BN2 Q96BN2 2 13 TADA1 Transcriptional adapter 1 yes yes 2 0.00086133 54.416 By matching By MS/MS By matching 1 1 1 0.95139 1.0367 37.665 3 Median 0.59202 0.63325 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95139 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2669 1.3269 NaN 1 0 Median NaN NaN NaN 0 0 Median 5471900 2765700 2706200 1272200 655250 616930 0 0 0 3850500 1929300 1921200 0 0 0 349250 181130 168120 0 0 0 3186 3608 3323 16690;16691;16692 17188 17188 1 ATFYGEQVDYYK ELVKLQQTYAALNSKATFYGEQVDYYKSYI NSKATFYGEQVDYYKSYIKTCLDNLASKGK K A T Y K S 1 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 1 0 3 1 0 0 12 0 1482.6667 P46940;H0YLE8 P46940 1517 1528 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 6.1396E-05 94.309 By MS/MS By MS/MS By MS/MS By matching 4 1 1 1 1.1075 1.0568 10.183 7 Median 1.1008 1.0744 8.6691 4 3 Median 1.0899 0.96565 NaN 1 0 Median 1.1411 1.2671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.233 1.0547 NaN 1 0 Median 95431000 44305000 51126000 76875000 36004000 40871000 11064000 5005300 6058800 7232300 3191900 4040500 0 0 0 0 0 0 259460 103600 155850 3187 2350 3324 16693;16694;16695;16696;16697;16698;16699 17189;17190;17191;17192;17193;17194;17195;17196;17197 17191 9 ATFYLNVLEQK LKRCVMDDDNEVRDRATFYLNVLEQKQKAL VRDRATFYLNVLEQKQKALNAGYILNGLTV R A T Q K Q 1 0 1 0 0 1 1 0 0 0 2 1 0 1 0 0 1 0 1 1 0 0 11 0 1324.7027 Q9Y678 Q9Y678 528 538 COPG1 Coatomer subunit gamma-1 yes yes 2 0.0052448 46.462 By MS/MS By matching 1 1 1.1263 0.9925 6.2448 2 Median NaN NaN NaN 0 0 Median 1.0852 0.94963 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1689 1.0373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4338600 2034200 2304400 0 0 0 4179100 1987600 2191400 0 0 0 159500 46574 112920 0 0 0 0 0 0 3188 4481 3325 16700;16701 17198 17198 1 ATFYLNVLQQR LQRCMMDTDDEVRDRATFYLNVLQQRQMAL VRDRATFYLNVLQQRQMALNATYIFNGLTV R A T Q R Q 1 1 1 0 0 2 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1351.7248 Q9UBF2 Q9UBF2 528 538 COPG2 Coatomer subunit gamma-2 yes yes 2 0.0001396 85.161 By MS/MS By MS/MS 1 1 1.1617 1.0583 6.4687 2 Median 1.0556 1.011 NaN 1 0 Median 1.2785 1.1078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8677300 4277300 4400000 4993200 2611800 2381400 3684100 1665500 2018700 0 0 0 0 0 0 0 0 0 0 0 0 3189 4238 3326 16702;16703 17199;17200;17201;17202 17202 4 ATGANATPLDFPSK ______________________________ MATGANATPLDFPSKKRKRSRWNQDTMEQK M A T S K K 3 0 1 1 0 0 0 1 0 0 1 1 0 1 2 1 2 0 0 0 0 0 14 0 1388.6936 Q15637;F8WEV5 Q15637 2 15 SF1 Splicing factor 1 yes no 2 2.3337E-08 133.07 By MS/MS By MS/MS By matching 1 1 1 0.83712 0.78888 29.643 3 Median 0.52553 0.48425 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83712 0.8273 NaN 1 0 Median 0.90727 0.78888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48676000 27130000 21546000 6982400 4938600 2043700 0 0 0 40566000 21620000 18946000 1128200 571590 556620 0 0 0 0 0 0 3190 2959 3327 16704;16705;16706 17203;17204;17205;17206;17207 17206 5 ATGANATPLDFPSKK ______________________________ ATGANATPLDFPSKKRKRSRWNQDTMEQKT M A T K K R 3 0 1 1 0 0 0 1 0 0 1 2 0 1 2 1 2 0 0 0 0 0 15 1 1516.7886 Q15637;F8WEV5 Q15637 2 16 SF1 Splicing factor 1 yes no 2 1.7285E-09 154.67 By MS/MS By matching 1 2 0.72524 0.80242 20.757 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72524 0.80242 NaN 1 0 Median 0.63562 0.62811 21.489 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21555000 11721000 9834000 0 0 0 0 0 0 20390000 11058000 9332100 1165000 663120 501870 0 0 0 0 0 0 3191 2959 3328 16707;16708;16709 17208;17209;17210;17211 17211 4 ATGDETGAKVER GKLMELHGEGSSSGKATGDETGAKVERADG SGKATGDETGAKVERADGYEPPVQESV___ K A T E R A 2 1 0 1 0 0 2 2 0 0 0 1 0 0 0 0 2 0 0 1 0 0 12 1 1232.5997 P61247;H0Y9Y4;D6RAT0;D6R9B6 P61247 241 252 RPS3A 40S ribosomal protein S3a yes no 3 0.0096251 28.327 By MS/MS By matching 1 2 1.152 1.2135 6.3978 3 Median 1.152 1.1402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1882 1.254 4.6405 2 0 Median NaN NaN NaN 0 0 Median 2314600 1045600 1269000 1652200 745810 906400 0 0 0 0 0 0 0 0 0 662390 299790 362600 0 0 0 3192 2553 3329 16710;16711;16712 17212;17213 17213 2 ATGEADVEFVTHEDAVAAMSK LNPIRVHIDIGADGRATGEADVEFVTHEDA VEFVTHEDAVAAMSKDKNNMQHRYIELFLN R A T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 P31942 P31942 233 253 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3 1.3758E-09 60.765 By MS/MS By matching By MS/MS By matching 1 1 3 1 0.98555 0.94365 6.3364 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97024 0.93492 NaN 1 0 Median 1.206 1.0207 NaN 1 0 Median 0.90499 0.95245 7.79 3 0 Median 1.1133 0.90797 NaN 1 0 Median 91425000 45056000 46369000 0 0 0 0 0 0 24338000 12107000 12231000 1645900 709510 936350 61456000 30523000 30933000 3985100 1716800 2268300 3193 2208 3330 16713;16714;16715;16716;16717;16718 17214;17215;17216;17217 17216 4 ATGEADVHFETHEDAVAAMLK LKPVRITMEYSSSGKATGEADVHFETHEDA VHFETHEDAVAAMLKDRSHVHHRYIELFLN K A T L K D 5 0 0 2 0 0 3 1 2 0 1 1 1 1 0 0 2 0 0 2 0 0 21 0 2241.0372 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 376 396 GRSF1 G-rich sequence factor 1 yes no 3 0.00029163 29.766 By MS/MS 1 0.97801 0.95223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97801 0.95223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7936500 3788900 4147600 0 0 0 0 0 0 7936500 3788900 4147600 0 0 0 0 0 0 0 0 0 3194 1035 3331 16719 17218;17219 17219 2 ATGEGFVEFR IVEDSIYIAYGPNGKATGEGFVEFRNEADY GPNGKATGEGFVEFRNEADYKAALCRHKQY K A T F R N 1 1 0 0 0 0 2 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 10 0 1111.5298 Q9NTZ6 Q9NTZ6 470 479 RBM12 RNA-binding protein 12 yes yes 2 0.037441 31.871 By matching By MS/MS By matching 1 1 1 1.204 1.282 30.534 3 Median 0.84293 0.81237 NaN 1 0 Median 1.6726 1.4504 NaN 1 0 Median 1.204 1.282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19186000 8474400 10712000 9824400 4499300 5325100 2634300 987630 1646700 6727300 2987500 3739800 0 0 0 0 0 0 0 0 0 3195 4111 3332 16720;16721;16722 17220 17220 1 ATGFDGGNKADQLDYENFR EKECGNYPGFLTILRATGFDGGNKADQLDY DGGNKADQLDYENFRHVVHKWHYKLTKASV R A T F R H 2 1 2 3 0 1 1 3 0 0 1 1 0 2 0 0 1 0 1 0 0 0 19 1 2116.945 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1076 1094 THOC2 THO complex subunit 2 yes no 3 1.5135E-13 103.5 By matching By MS/MS By matching By matching 1 2 2 1 1.0756 1.2048 16.428 6 Median 1.5093 1.5338 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93215 1.0863 6.7545 2 0 Median 1.1599 1.1172 18.567 2 0 Median 1.14 1.2939 NaN 1 0 Median NaN NaN NaN 0 0 Median 75867000 38576000 37291000 2956000 1343300 1612600 0 0 0 68737000 35103000 33634000 1898300 888130 1010200 2276100 1242400 1033700 0 0 0 3196 3448 3333 16723;16724;16725;16726;16727;16728 17221;17222;17223;17224 17221 4 ATGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRATGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A T I K Y 1 0 0 0 0 0 0 6 0 1 1 1 0 0 0 4 2 0 0 1 0 0 17 0 1434.7314 CON__P04259 CON__P04259 534 550 no no 2 1.2446E-08 82.362 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2082900 2082900 0 0 0 0 548820 548820 0 0 0 0 0 0 0 0 0 0 1534000 1534000 0 + 3197 748 3334 16729;16730 17225;17226 17226 2 ATGHVFQALQYLR SSATLSEETEKPKLKATGHVFQALQYLRKL LKATGHVFQALQYLRKLCNHPALVLTPQHP K A T L R K 2 1 0 0 0 2 0 1 1 0 2 0 0 1 0 0 1 0 1 1 0 0 13 0 1502.7994 A0A0A0MTH9;O14981 A0A0A0MTH9 1564 1576 BTAF1 TATA-binding protein-associated factor 172 yes no 3 6.8805E-05 79.492 By MS/MS By matching 1 1 1.1385 1.1151 8.7497 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0722 1.1863 NaN 1 0 Median 1.2089 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3973100 1972700 2000300 0 0 0 0 0 0 3856700 1914800 1941900 116420 57943 58482 0 0 0 0 0 0 3198 191 3335 16731;16732 17227;17228 17227 2 ATGILLYGLASR AATQAQQTLGSTIDKATGILLYGLASRLRD IDKATGILLYGLASRLRDTRRLSFLVSYIA K A T S R L 2 1 0 0 0 0 0 2 0 1 3 0 0 0 0 1 1 0 1 0 0 0 12 0 1233.7081 P47897;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2;F2Z2V6 P47897 51 62 QARS Glutamine--tRNA ligase yes no 2 0.0031588 46.844 By MS/MS By matching By matching 1 3 1 1.1353 0.92006 21.584 5 Median 1.1353 1.0742 NaN 1 0 Median 0.92167 0.78766 28.401 3 0 Median NaN NaN NaN 0 0 Median 1.1361 0.92006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13252000 6224900 7027500 11527000 5307400 6219200 1656900 892490 764440 0 0 0 68898 25043 43855 0 0 0 0 0 0 3199 2356 3336 16733;16734;16735;16736;16737 17229;17230 17229 2 ATGLHFR VSLKKIYDREQTRYKATGLHFRHTDNVIQW DREQTRYKATGLHFRHTDNVIQWLNAMDEI K A T F R H 1 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 800.42932 P46940;A0A0J9YXZ5 P46940 105 111 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.010821 81.381 By matching By MS/MS By matching By matching 1 2 1 1 1.0752 0.96802 23.52 5 Median 1.2485 1.2541 NaN 1 0 Median 1.111 0.95384 3.3256 2 0 Median 0.87826 0.96802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77878 0.65021 NaN 1 0 Median 11284000 5529300 5755100 1286900 676570 610300 7020800 3218100 3802700 2387300 1320500 1066800 0 0 0 0 0 0 589480 314220 275250 3200 2350 3337 16738;16739;16740;16741;16742 17231;17232;17233 17232 3 ATGVNVNISDLK KDEQVVVSHDENLKRATGVNVNISDLKYCE LKRATGVNVNISDLKYCELPPYLGKLDVSF R A T L K Y 1 0 2 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 12 0 1229.6616 Q8N9F7;J3KTA9;J3QQN7 Q8N9F7 94 105 GDPD1 Glycerophosphodiester phosphodiesterase domain-containing protein 1 yes no 2 0.031142 27.864 By MS/MS By matching 1 1 1.2327 1.0986 43.169 2 Median 0.86382 0.80957 NaN 1 0 Median 1.7591 1.4907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8108900 3816500 4292500 7125300 3501600 3623700 983610 314860 668750 0 0 0 0 0 0 0 0 0 0 0 0 3201 3398 3338 16743;16744 17234 17234 1 ATGYPLAYVAAK EVNARLSRSSALASKATGYPLAYVAAKLAL ASKATGYPLAYVAAKLALGIPLPELRNSVT K A T A K L 4 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 2 1 0 0 12 0 1223.655 F8VPD4;P27708 F8VPD4 634 645 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0012722 54.982 By MS/MS By matching 2 1 1.2151 1.1748 21.237 3 Plateau 1.2019 1.1816 0.82149 2 1 Median 0.92169 0.81806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23238000 10547000 12690000 19370000 8539600 10830000 3868200 2007900 1860300 0 0 0 0 0 0 0 0 0 0 0 0 3202 1057 3339 16745;16746;16747 17235;17236;17237 17236 3 ATHDGAPELGAGGTR SDVYGANLFHQYLQKATHDGAPELGAGGTR ATHDGAPELGAGGTRQQQPSASQSCISILV K A T T R Q 3 1 0 1 0 0 1 4 1 0 1 0 0 0 1 0 2 0 0 0 0 0 15 0 1408.6695 Q9BXW7;A8MYZ9 Q9BXW7 332 346 CECR5 Cat eye syndrome critical region protein 5 yes no 3 0.00072745 37.77 By matching By MS/MS 1 1 1.0538 0.98464 33.006 2 Median 0.76504 0.77968 NaN 1 0 Median 1.4516 1.2435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1639300 763540 875750 373160 194220 178940 1266100 569310 696810 0 0 0 0 0 0 0 0 0 0 0 0 3203 3882 3340 16748;16749 17238;17239 17239 2 ATHYHLSSQVQEMAGK DTVTVRLSTSSNSQRATHYHLSSQVQEMAG THYHLSSQVQEMAGKIDLLRDSHIFQLFWR R A T G K I 2 0 0 0 0 2 1 1 2 0 1 1 1 0 0 2 1 0 1 1 0 0 16 0 1785.8468 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1257 1272 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 2.3253E-10 115.8 By matching By MS/MS 1 1 1.0778 1.0131 38.315 2 Median 0.7738 0.7727 NaN 1 0 Median 1.5014 1.3284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18153000 8813400 9339800 6993400 4188800 2804600 11160000 4624600 6535200 0 0 0 0 0 0 0 0 0 0 0 0 3204 189 3341 16750;16751 17240 17240 1 ATIAGGGVIPHIHK QLAIRGDEELDSLIKATIAGGGVIPHIHKS KATIAGGGVIPHIHKSLIGKKGQQKTA___ K A T H K S 2 0 0 0 0 0 0 3 2 3 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1369.783 Q71UI9;P0C0S5 Q71UI9 103 116 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3 3.5206E-09 142.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 1 15 12 1.0546 0.99698 19.708 38 Median 1.0794 1.0166 18.642 3 0 Median 1.5049 1.2314 0.81489 3 0 Plateau 0.98611 0.92933 13.726 5 0 Median 1.452 1.2037 NaN 1 0 Median 0.84741 0.87503 13.899 14 0 Median 1.34 1.0948 14.259 12 0 Median 6396200000 3275800000 3120300000 44427000 20330000 24097000 205550000 90337000 115210000 120480000 58659000 61825000 5588500 2299500 3289000 5056500000 2700700000 2355900000 963620000 403570000 560050000 3205 1925 3342 16752;16753;16754;16755;16756;16757;16758;16759;16760;16761;16762;16763;16764;16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779;16780;16781;16782;16783;16784;16785;16786;16787;16788;16789;16790 17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252;17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266;17267;17268;17269;17270;17271;17272;17273;17274;17275;17276;17277;17278;17279;17280;17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295;17296;17297;17298;17299;17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323;17324 17287 84 ATIAGGGVIPHIHKSLIGK QLAIRGDEELDSLIKATIAGGGVIPHIHKS GGGVIPHIHKSLIGKKGQQKTA________ K A T G K K 2 0 0 0 0 0 0 4 2 4 1 2 0 0 1 1 1 0 0 1 0 0 19 1 1868.0996 Q71UI9;P0C0S5 Q71UI9 103 121 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 4 0.029071 14.161 By MS/MS By matching 2 2 1.0394 1.0792 11.105 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93872 1.0792 0 2 0 Median 1.3054 1.1105 19.022 2 0 Median 23504000 12132000 11373000 0 0 0 0 0 0 0 0 0 0 0 0 16395000 8381300 8013900 7109000 3750200 3358800 3206 1925 3343 16791;16792;16793;16794 17325 17325 1 ATIELCSTHANDASALR LVLDAFALPLTNLFKATIELCSTHANDASA IELCSTHANDASALRILFSSLILISKLFYS K A T L R I 4 1 1 1 1 0 1 0 1 1 2 0 0 0 0 2 2 0 0 0 0 0 17 0 1828.8738 P55060 P55060 190 206 CSE1L Exportin-2 yes yes 3 0.00012432 42.813 By MS/MS 2 1.2257 1.0457 10.682 2 Median NaN NaN NaN 0 0 Median 1.2257 1.0457 10.682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9698100 3938100 5760100 0 0 0 9698100 3938100 5760100 0 0 0 0 0 0 0 0 0 0 0 0 3207 2493 3344 16795;16796 17326 17326 1 ATIERDGYAQILR CKSQFTITPGSEQIRATIERDGYAQILRDL IRATIERDGYAQILRDLGGIVLANACGPCI R A T L R D 2 2 0 1 0 1 1 1 0 2 1 0 0 0 0 0 1 0 1 0 0 0 13 1 1504.7998 A2A274;Q99798 A2A274 450 462 ACO2 Aconitate hydratase, mitochondrial yes no 3 0.050071 26.124 By MS/MS 1 1.9861 2.0363 NaN 1 Median 1.9861 2.0363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2987900 1268000 1719900 2987900 1268000 1719900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3208 495 3345 16797 17327 17327 1 ATIFEINASSR QRLRLVDSIKNYRSRATIFEINASSRDLCS YRSRATIFEINASSRDLCSQVMRAKRQKDR R A T S R D 2 1 1 0 0 0 1 0 0 2 0 0 0 1 0 2 1 0 0 0 0 0 11 0 1207.6197 Q8TDD1 Q8TDD1 573 583 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.00014249 87.913 By MS/MS By matching 1 2 1.1376 1.0051 26.598 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98165 1.0051 NaN 1 0 Median 1.4807 1.2369 33.58 2 0 Median 11591000 5766300 5824600 0 0 0 0 0 0 0 0 0 0 0 0 9169400 4709400 4460000 2421500 1056900 1364600 3209 3470 3346 16798;16799;16800 17328 17328 1 ATIGADFLTK LMNQYVNKKFSNQYKATIGADFLTKEVMVD SNQYKATIGADFLTKEVMVDDRLVTMQIWD K A T T K E 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1035.5601 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 P51149 39 48 RAB7A Ras-related protein Rab-7a yes no 2 0.0013205 66.568 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 3 4 2 1 1 1 1.1852 1.0754 9.6138 11 Median 1.1785 1.0857 3.5796 3 0 Plateau 1.3627 1.1543 3.6256 3 0 Median 1.0602 1.0348 4.8247 2 0 Median 1.1852 0.97947 NaN 1 0 Median 1.3462 1.3764 NaN 1 0 Median 1.2434 1.0293 NaN 1 0 Median 161720000 71078000 90642000 116660000 51961000 64697000 23294000 9610600 13683000 11194000 5127800 6066000 1243000 624780 618200 5208000 1926600 3281400 4123200 1827200 2295900 3210 2428 3347 16801;16802;16803;16804;16805;16806;16807;16808;16809;16810;16811;16812 17329;17330;17331;17332;17333;17334;17335;17336;17337;17338;17339 17332 11 ATILDLSCNK DLNEVPVKELAALPKATILDLSCNKLTTLP AALPKATILDLSCNKLTTLPSDFCGLTHLV K A T N K L 1 0 1 1 1 0 0 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1133.5751 Q96AG4 Q96AG4 41 50 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.011506 57.59 By MS/MS 1 3.1385 2.6358 NaN 1 Median NaN NaN NaN 0 0 Median 3.1385 2.6358 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13851000 3167400 10683000 0 0 0 13851000 3167400 10683000 0 0 0 0 0 0 0 0 0 0 0 0 3211 3600 3348 16813 17340 17340 1 ATIMSLEDFEQR ______________________________ AKRATIMSLEDFEQRLNQAIERNAFLESEL R A T Q R L 1 1 0 1 0 1 2 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 12 0 1438.6762 I3L522;Q9NXR1 I3L522 10 21 NDE1 Nuclear distribution protein nudE homolog 1 yes no 2 0.001379 53.683 By matching By MS/MS 1 1 1.1858 1.2486 33.521 2 Median 1.5466 1.5826 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90923 0.98509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4458600 2190400 2268200 1048600 428610 620030 0 0 0 3409900 1761800 1648100 0 0 0 0 0 0 0 0 0 3212 1295 3349 16814;16815 17341;17342 17342 2 ATIQFHQPQR KAHFLQLRKDFDQKRATIQFHQPQRFKDEL FDQKRATIQFHQPQRFKDELWRIQEKLECY R A T Q R F 1 1 0 0 0 3 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 10 0 1224.6364 Q8IUF8 Q8IUF8 133 142 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2;3 0.0010608 55.064 By MS/MS By MS/MS By matching 1 2 1 1.1348 1.0215 35.897 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2822 1.2891 NaN 1 0 Median 1.1803 1.0215 22.353 2 1 Median NaN NaN NaN 0 0 Median 0.63856 0.58616 NaN 1 0 Median 6088300 2792700 3295700 0 0 0 0 0 0 3323200 1519000 1804300 2017400 959970 1057400 0 0 0 747720 313740 433980 3213 3313 3350 16816;16817;16818;16819 17343;17344;17345;17346 17345 4 ATIQGVLR LSTYIKFINLFPETKATIQGVLRAGSQLRN NLFPETKATIQGVLRAGSQLRNADVELQQR K A T L R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 0 856.51305 O95782 O95782 557 564 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.013642 52.636 By MS/MS By matching By MS/MS 1 2 2 1.255 1.1462 7.6567 5 Median 1.1219 1.1157 NaN 1 0 Median 1.3162 1.1412 0.61694 2 0 Median 1.1447 1.2434 11.235 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12912000 6026700 6885600 1710200 865720 844490 3498000 1471000 2027000 7704100 3690000 4014100 0 0 0 0 0 0 0 0 0 3214 1793 3351 16820;16821;16822;16823;16824 17347;17348 17348 2 ATIRPVFDPSK NILFAEAHIPGSPFKATIRPVFDPSKVRAS SPFKATIRPVFDPSKVRASGPGLERGKVGE K A T S K V 1 1 0 1 0 0 0 0 0 1 0 1 0 1 2 1 1 0 0 1 0 0 11 1 1229.6768 Q14315 Q14315 1147 1157 FLNC Filamin-C yes yes 2;3 5.3478E-05 80.318 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 2 1 1 0.82412 0.83582 27.244 10 Median 0.84649 0.88189 5.7134 3 1 Median 0.62164 0.58116 9.1907 2 1 Median 1.005 1.1995 NaN 1 0 Median 0.78417 0.7436 21.997 2 0 Median 1.1029 1.2511 NaN 1 0 Median 0.80234 0.71272 NaN 1 0 Median 76546000 44836000 31709000 29949000 15649000 14300000 38713000 25273000 13440000 3023500 1432300 1591200 1845100 1010900 834240 1543600 715630 827990 1471500 754980 716490 3215 2871 3352 16825;16826;16827;16828;16829;16830;16831;16832;16833;16834 17349;17350;17351;17352;17353;17354;17355;17356;17357;17358;17359 17355 11 ATIRPWSTFVDQQR ______________________________ RATIRPWSTFVDQQRFSRPRNLGELCQRLV R A T Q R F 1 2 0 1 0 2 0 0 0 1 0 0 0 1 1 1 2 1 0 1 0 0 14 1 1703.8744 M0QXH1;M0R1H9;M0R3D4;Q9UI14 M0QXH1 10 23 RABAC1 Prenylated Rab acceptor protein 1 yes no 2;3 0.00026269 59.248 By MS/MS By matching 4 3 0.85211 0.81272 16.86 7 Median 0.76365 0.77895 21.49 4 0 Median 0.96522 0.81272 11.868 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29080000 14633000 14447000 23471000 11867000 11605000 5608600 2766300 2842200 0 0 0 0 0 0 0 0 0 0 0 0 3216 1410 3353 16835;16836;16837;16838;16839;16840;16841 17360;17361;17362 17361 3 ATISALEAK AKLQELEGAVKSKFKATISALEAKIGQLEE VKSKFKATISALEAKIGQLEEQLEQEAKER K A T A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 P35580 P35580 1814 1822 MYH10 Myosin-10 yes yes 2 0.0010633 85.67 By MS/MS By MS/MS By MS/MS 1 1 1 1.2251 1.0857 26.11 3 Plateau 1.09 1.0397 NaN 1 0 Median 1.2251 1.0857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64435 0.67698 NaN 1 1 Median NaN NaN NaN 0 0 Median 15919000 7479500 8439400 2751300 1192100 1559200 9327900 4121200 5206700 0 0 0 0 0 0 3839700 2166200 1673500 0 0 0 3217 2245 3354 16842;16843;16844 17363;17364;17365;17366 17366 4 ATISDEEIER APSAARSLPSASTSKATISDEEIERQLKAL ASTSKATISDEEIERQLKALGVD_______ K A T E R Q 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 10 0 1161.5513 Q9UQN3;C9J0A7 Q9UQN3 196 205 CHMP2B Charged multivesicular body protein 2b yes no 2 0.0006139 107.57 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.0758 0.94102 25.225 7 Median NaN NaN NaN 0 0 Median 0.83513 0.70731 NaN 1 0 Median 1.2431 1.2027 34.695 2 0 Median 1.1387 0.94929 10.697 2 0 Median NaN NaN NaN 0 0 Median 1.2436 1.0297 23.424 2 0 Median 60445000 27646000 32799000 0 0 0 2983200 1864800 1118400 26107000 11422000 14686000 27695000 12698000 14997000 0 0 0 3659600 1662000 1997500 3218 667 3355 16845;16846;16847;16848;16849;16850;16851 17367;17368;17369;17370;17371;17372;17373;17374;17375;17376 17371 10 ATISLSDSDLLR LLTDGDVHIRDDGRRATISLSDSDLLRLEG GRRATISLSDSDLLRLEGDSRTVRLLKELR R A T L R L 1 1 0 2 0 0 0 0 0 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1289.6827 H7BXY3;Q7L2E3 H7BXY3 1088 1099 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.016133 34.532 By matching By matching By MS/MS By matching 1 1 1 1 1.2759 1.1694 9.0647 4 Median 1.1279 1.0907 NaN 1 0 Median 1.3288 1.1369 NaN 1 0 Median 1.2251 1.3442 NaN 1 0 Median 1.3965 1.2028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9428500 3906800 5521600 3899200 1599300 2299800 2273000 943680 1329300 2748300 1142300 1606100 508000 221560 286440 0 0 0 0 0 0 3219 1244 3356 16852;16853;16854;16855 17377 17377 1 ATISNDGATILK GPRGMDKLIVDGRGKATISNDGATILKLLD RGKATISNDGATILKLLDVVHPAAKTLVDI K A T L K L 2 0 1 1 0 0 0 1 0 2 1 1 0 0 0 1 2 0 0 0 0 0 12 0 1202.6507 Q99832;F8WAM2 Q99832 56 67 CCT7 T-complex protein 1 subunit eta yes no 2 3.5722E-06 115.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 1.1978 0.99145 16.043 9 Median 1.2252 1.1032 6.4291 2 0 Median 1.1999 0.99145 4.8284 3 0 Median 1.2262 1.1891 NaN 1 0 Median 1.0652 0.91072 10.579 2 0 Median NaN NaN NaN 0 0 Median 0.85849 0.70671 NaN 1 0 Median 310450000 145900000 164550000 108450000 48572000 59874000 174400000 84749000 89655000 16941000 6735000 10206000 6204900 3315700 2889300 0 0 0 4452400 2524100 1928400 3220 3771 3357 16856;16857;16858;16859;16860;16861;16862;16863;16864 17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389 17380 12 ATIYGILR DQQEAAPPGSVDHMKATIYGILREGSSESE GSVDHMKATIYGILREGSSESETSVRRKVS K A T L R E 1 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 1 0 0 0 8 0 905.53345 Q9P2M7;H0Y4A8 Q9P2M7 310 317 CGN Cingulin yes no 2 0.043245 36.185 By matching By MS/MS 1 1 1.0039 1.0664 25.361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82986 0.89132 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2144 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median 4223700 1982300 2241400 0 0 0 0 0 0 778900 333890 445010 0 0 0 3444800 1648400 1796300 0 0 0 3221 4226 3358 16865;16866 17390 17390 1 ATLDEYTTR SIRKRQQTRLLRKLRATLDEYTTRVGQQAI LLRKLRATLDEYTTRVGQQAIVLCISPSKP R A T T R V 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 3 0 1 0 0 0 9 0 1068.5088 Q16656;C9JP85 Q16656 117 125 NRF1 Nuclear respiratory factor 1 yes no 2 0.031357 48.794 By MS/MS 1 0.96753 1.012 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96753 1.012 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3142100 1539100 1603000 0 0 0 0 0 0 3142100 1539100 1603000 0 0 0 0 0 0 0 0 0 3222 2992 3359 16867 17391 17391 1 ATLEQDSAKKEQQLQER IGNQNKLIQELKTAKATLEQDSAKKEQQLQ LEQDSAKKEQQLQERCKALQDIQKEKSLKE K A T E R C 2 1 0 1 0 4 3 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 17 2 2001.0127 Q15075 Q15075 1085 1101 EEA1 Early endosome antigen 1 yes yes 4 0.017011 20.368 By MS/MS 1 0.79678 0.84226 NaN 1 Median 0.79678 0.84226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1738400 780900 957480 1738400 780900 957480 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3223 2926 3360 16868 17392 17392 1 ATLEVILRPK YGPAEVKVSKEIFNKATLEVILRPKIGLPG EIFNKATLEVILRPKIGLPGVAEKSRERLI K A T P K I 1 1 0 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 10 1 1138.7074 Q9NQT4;M0R102 Q9NQT4 74 83 EXOSC5 Exosome complex component RRP46 yes no 2 0.0017528 93.162 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1034 1.0354 11.374 5 Median 0.90825 0.94783 NaN 1 0 Median 1.2559 1.1669 NaN 1 0 Median 0.988 1.0354 NaN 1 0 Median 1.1034 0.9767 NaN 1 0 Median 1.1651 1.2333 NaN 1 0 Median NaN NaN NaN 0 0 Median 52324000 26244000 26079000 16320000 8339500 7980600 4400400 1996200 2404200 14741000 8058200 6682600 9283800 4399800 4884000 7578400 3450600 4127800 0 0 0 3224 4066 3361 16869;16870;16871;16872;16873 17393;17394;17395;17396;17397;17398 17396 6 ATLITFLCDR YRGGTPYNNERHTPRATLITFLCDRDAGVG RHTPRATLITFLCDRDAGVGFPEYQEEDNS R A T D R D 1 1 0 1 1 0 0 0 0 1 2 0 0 1 0 0 2 0 0 0 0 0 10 0 1208.6223 P11717 P11717 724 733 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.037578 45.997 By MS/MS 1 1.2141 1.0211 NaN 1 Median NaN NaN NaN 0 0 Median 1.2141 1.0211 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1732100 735650 996440 0 0 0 1732100 735650 996440 0 0 0 0 0 0 0 0 0 0 0 0 3225 1969 3362 16874 17399 17399 1 ATLKDQLIYNLLK ______________________________ ______________________________ M A T L K E 1 0 1 1 0 1 0 0 0 1 4 2 0 0 0 0 1 0 1 0 0 0 13 1 1531.8974 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5H8H6;F5GXC7;F5GWW2;F5GXU1 P00338 2 14 LDHA L-lactate dehydrogenase A chain yes no 2 6.6685E-149 265.12 By matching By MS/MS By MS/MS 1 6 1 1.2763 1.2 23.781 8 Median 1.7264 1.756 NaN 1 0 Median 1.22 1.1272 19.608 6 1 Median 1.3163 1.3773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 560300000 265420000 294870000 641270 247070 394190 553550000 262620000 290940000 6101500 2558600 3542800 0 0 0 0 0 0 0 0 0 3226 1813 3363 16875;16876;16877;16878;16879;16880;16881;16882 17400;17401 17401 2 ATLKDQLIYNLLKEEQTPQNK ______________________________ LIYNLLKEEQTPQNKITVVGVGAVGMACAI M A T N K I 1 0 2 1 0 3 2 0 0 1 4 3 0 0 1 0 2 0 1 0 0 0 21 2 2486.3381 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5H8H6;F5GXC7;F5GWW2;F5GXU1 P00338 2 22 LDHA L-lactate dehydrogenase A chain yes no 3 6.4115E-57 216.16 By MS/MS By MS/MS By matching By matching 3 1 1 1 0.94233 0.98215 18.344 6 Median 0.98094 1.0247 5.7915 3 0 Median 0.87076 0.86489 NaN 1 0 Median 0.90523 0.93432 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3305 1.4557 NaN 1 0 Median NaN NaN NaN 0 0 Median 341680000 166520000 175160000 109350000 52872000 56474000 228210000 111880000 116330000 1653100 787100 865970 0 0 0 2478600 987310 1491300 0 0 0 3227 1813 3364 16883;16884;16885;16886;16887;16888 17402;17403;17404;17405;17406 17405 5 ATLLQQR TNTEIVECILKRGQKATLLQQRREGEMKEI CILKRGQKATLLQQRREGEMKEIERPFETY K A T Q R R 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 828.48175 P46013 P46013 911 917 MKI67 Antigen KI-67 yes yes 2 0.021008 59.641 By MS/MS 1 1.2309 1.3553 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2309 1.3553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2801700 1190300 1611400 0 0 0 0 0 0 2801700 1190300 1611400 0 0 0 0 0 0 0 0 0 3228 2335 3365 16889 17407;17408 17408 2 ATLNAFLYR FLRKRATEKISEDLRATLNAFLYRTGQHSN ISEDLRATLNAFLYRTGQHSNKFMLVLASN R A T Y R T 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1067.5764 H0Y2W2;Q5SV16;Q9NVI7 H0Y2W2 417 425 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 0.00050139 119.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.3237 1.3569 22.406 7 Median 1.2148 1.1516 NaN 1 0 Median 1.5757 1.3621 NaN 1 0 Median 1.2787 1.3074 5.2515 2 0 Median NaN NaN NaN 0 0 Median 1.662 1.7184 40.622 2 1 Median 1.711 1.475 NaN 1 0 Median 58921000 24626000 34295000 13796000 6041800 7754500 17249000 6808300 10440000 15782000 6733800 9048400 0 0 0 8934400 3843200 5091300 3159600 1199100 1960500 3229 1140;4133 3366 16890;16891;16892;16893;16894;16895;16896 17409;17410;17411;17412;17413;17414;17415;17416;17417;17418 17410 10 ATLPDADKER IEEIQGLTTAHEQFKATLPDADKERLAILG HEQFKATLPDADKERLAILGIHNEVSKIVQ K A T E R L 2 1 0 2 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 10 1 1114.5619 P12814;H9KV75;H7C5W8 P12814 556 565 ACTN1 Alpha-actinin-1 yes no 2 0.033426 48.283 By matching By MS/MS 1 1 0.88205 0.89798 7.7437 2 Median 0.91784 0.94852 NaN 1 0 Median 0.84766 0.85013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1826700 892480 934180 668560 335100 333460 1158100 557380 600710 0 0 0 0 0 0 0 0 0 0 0 0 3230 1983 3367 16897;16898 17419 17419 1 ATLPSPDKLPGFK SANASVDDSRLEELKATLPSPDKLPGFKMY LKATLPSPDKLPGFKMYPIDFEKDDDSNFH K A T F K M 1 0 0 1 0 0 0 1 0 0 2 2 0 1 3 1 1 0 0 0 0 0 13 1 1369.7606 P22314;Q5JRR6 P22314 831 843 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 0.00031214 61.375 By MS/MS By MS/MS By MS/MS By matching 2 1 4 1 0.84096 0.86395 56.598 8 Median 0.63939 0.66193 5.8853 2 0 Median 0.85839 0.79281 NaN 1 0 Median 0.84729 0.96211 11.603 4 1 Median 4.3304 3.7888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 214470000 128350000 86124000 178530000 108560000 69979000 21428000 13440000 7988400 14197000 6268700 7928700 311830 83461 228370 0 0 0 0 0 0 3231 2100 3368 16899;16900;16901;16902;16903;16904;16905;16906 17420;17421;17422;17423;17424;17425;17426;17427;17428;17429;17430;17431;17432;17433;17434 17430 15 ATLQEILPEVLK QPRKALVDILSEVSKATLQEILPEVLKADL VSKATLQEILPEVLKADLNIILSSPEQLEL K A T L K A 1 0 0 0 0 1 2 0 0 1 3 1 0 0 1 0 1 0 0 1 0 0 12 0 1352.7915 Q9BQG0;I3L1L3 Q9BQG0 191 202 MYBBP1A Myb-binding protein 1A yes no 2 0.00047477 77.662 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 5 5 1 4 9 0.94562 0.8809 34.463 25 Median 1.8254 1.7531 NaN 1 0 Median 1.022 0.86696 21.307 5 0 Median 0.88064 0.8809 25.659 5 0 Median 0.96652 0.87074 NaN 1 0 Median 0.88017 0.91373 8.5759 4 0 Median 0.99666 0.86276 47.345 9 0 Median 40250000 20524000 19726000 561830 220180 341650 17833000 8714700 9118400 7970800 4205300 3765500 380630 187350 193270 7288900 3958300 3330500 6215000 3238500 2976500 3232 3789 3369 16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928;16929;16930;16931 17435;17436;17437;17438;17439;17440;17441 17436 7 ATLQPEYSDK LQFSRTGPLCPACMKATLQPEYSDKSLYTQ PACMKATLQPEYSDKSLYTQLCFYRYIFDA K A T D K S 1 0 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 10 0 1150.5506 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1376 1385 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.0024839 74.464 By MS/MS 1 1.1665 1.024 NaN 1 Median NaN NaN NaN 0 0 Median 1.1665 1.024 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1461000 670500 790460 0 0 0 1461000 670500 790460 0 0 0 0 0 0 0 0 0 0 0 0 3233 26 3370 16932 17442 17442 1 ATLSAEVYR RIWNNEDVNLDKVFKATLSAEVYRILSVQG LDKVFKATLSAEVYRILSVQGTEPLVLFKE K A T Y R I 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1008.524 Q9H8H0;J3QLQ6 Q9H8H0 103 111 NOL11 Nucleolar protein 11 yes no 2 0.00060862 109.86 By MS/MS By MS/MS By MS/MS By matching 1 1 2 4 1.3746 1.1972 23.742 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.139 1.1897 NaN 1 0 Median 1.6175 1.3936 NaN 1 0 Median 1.3746 1.4382 NaN 1 1 Median 1.3402 1.1061 26.099 4 0 Median 16654000 7159400 9494800 0 0 0 0 0 0 5417100 2433800 2983300 1676900 593340 1083500 4834600 2030300 2804300 4725700 2102000 2623700 3234 3990 3371 16933;16934;16935;16936;16937;16938;16939;16940 17443;17444;17445;17446;17447 17443 5 ATLVDHGIR DRLAAMFREFTQQNKATLVDHGIRRLTFLV FTQQNKATLVDHGIRRLTFLVAQKDFRKQV K A T I R R 1 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 980.54033 Q13085;Q59FY4 Q13085 1317 1325 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.04318 32.841 By MS/MS 1 1.234 1.0708 NaN 1 Median NaN NaN NaN 0 0 Median 1.234 1.0708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 652040 276010 376040 0 0 0 652040 276010 376040 0 0 0 0 0 0 0 0 0 0 0 0 3235 2784 3372 16941 17448 17448 1 ATLVESSTSGFTPGGGGSSVSMIASR KESQRSGNVAELALKATLVESSTSGFTPGG TPGGGGSSVSMIASRKPTDGASSSNCVTDI K A T S R K 2 1 0 0 0 0 1 5 0 1 1 0 1 1 1 7 3 0 0 2 0 0 26 0 2442.1697 P49321;Q5T624;H0YDS9 P49321 672 697 NASP Nuclear autoantigenic sperm protein yes no 2;3 2.2616E-37 121.19 By MS/MS 4 0.92978 0.90391 3.887 4 Median 0.92978 0.90391 3.887 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34196000 17696000 16500000 34196000 17696000 16500000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3236 2376 3373 16942;16943;16944;16945 17449;17450;17451;17452;17453;17454;17455;17456 17453 8 ATLWYVPLSLK MSENILTGAKKLTNKATLWYVPLSLKNVDK LTNKATLWYVPLSLKNVDKVLEVPPVVYSR K A T L K N 1 0 0 0 0 0 0 0 0 0 3 1 0 0 1 1 1 1 1 1 0 0 11 0 1289.7384 O00154;K7EKP8 O00154 158 168 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 2 0.002334 61.56 By MS/MS By matching By matching 3 2 3 0.98768 0.88653 16.019 8 Median 1.017 0.95739 16.096 3 0 Plateau 1.1168 0.95998 8.7324 2 0 Median 1.0355 1.1566 23.569 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44972000 22934000 22038000 38237000 19881000 18356000 4392800 2015000 2377700 2342700 1038300 1304300 0 0 0 0 0 0 0 0 0 3237 1443 3374 16946;16947;16948;16949;16950;16951;16952;16953 17457;17458 17457 1 ATLYVTAIEDR RDKWLAPDGLIFPDRATLYVTAIEDRQYKD FPDRATLYVTAIEDRQYKDYKIHWWENVYG R A T D R Q 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 2 0 1 1 0 0 11 0 1250.6507 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4 E9PKG1 150 160 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 1.5206E-21 195.57 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1.1127 1.0588 9.5084 8 Median 1.1127 1.0781 2.737 4 1 Median 1.0527 0.88501 3.5415 2 1 Median 0.99497 1.0937 NaN 1 0 Median 1.143 0.98372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 235180000 111890000 123290000 135540000 62577000 72967000 29255000 15411000 13844000 66921000 32363000 34558000 3463600 1538500 1925100 0 0 0 0 0 0 3238 947 3375 16954;16955;16956;16957;16958;16959;16960;16961;16962 17459;17460;17461;17462;17463;17464;17465;17466;17467;17468;17469;17470;17471;17472 17460 14 ATMQNLNDR SSFGGVDGLLAGGEKATMQNLNDRLASYLD LAGGEKATMQNLNDRLASYLDKVRALEEAN K A T D R L 1 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1061.4924 CON__Q04695;Q04695;K7EPJ9;CON__Q9C075;CON__Q99PS0;Q9C075 CON__Q04695 86 94 KRT17;KRT23 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 23 no no 2 0.00090662 91.318 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.79594 0.68714 47.983 6 Median NaN NaN NaN 0 0 Median 0.76748 0.65671 NaN 1 0 Median 1.4158 1.421 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6001 1.6132 NaN 1 0 Median 0.66068 0.56971 16.036 3 0 Median 13292000 6768000 6523600 0 0 0 2955600 1844900 1110700 4232800 1648300 2584500 0 0 0 2612200 1211800 1400400 3491000 2063000 1428000 + 3239 768 3376 16963;16964;16965;16966;16967;16968 17473;17474;17475;17476;17477;17478;17479;17480 17473 8 ATMSYLLGGGMK AFIRGQLENAEQLFKATMSYLLGGGMKQED LFKATMSYLLGGGMKQEDNAIIEISLKLAS K A T M K Q 1 0 0 0 0 0 0 3 0 0 2 1 2 0 0 1 1 0 1 0 0 0 12 0 1227.5992 Q6DKK2 Q6DKK2 161 172 TTC19 Tetratricopeptide repeat protein 19, mitochondrial yes yes 2 0.0038153 45.161 By MS/MS By matching 1 1 0.81794 0.75044 32.533 2 Median 0.98529 0.94455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67902 0.59623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4892600 2331400 2561200 4755900 2246300 2509600 0 0 0 0 0 0 136680 85094 51581 0 0 0 0 0 0 3240 3134 3377 16969;16970 17481 17481 1 ATNDEIFSILK GHSVALCLAVAFKSKATNDEIFSILKDVPN FKSKATNDEIFSILKDVPNPNQDDDDDEGF K A T L K D 1 0 1 1 0 0 1 0 0 2 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1249.6554 Q09161 Q09161 512 522 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.027726 32.32 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 3 3 1.1478 1.069 10.93 9 Median 1.2433 1.1878 NaN 1 0 Median 1.4188 1.2468 NaN 1 0 Median 1.0021 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1334 1.0876 3.0506 3 0 Median 1.1623 0.98545 10.452 3 0 Median 22290000 10663000 11627000 3899900 1632100 2267800 3244000 1819200 1424800 5358600 2635800 2722700 0 0 0 6864200 3305500 3558700 2923500 1270100 1653400 3241 2747 3378 16971;16972;16973;16974;16975;16976;16977;16978;16979 17482;17483;17484;17485 17483 4 ATNESEDEIPQLVPIGK EHGKKKRGRGKAQVKATNESEDEIPQLVPI NESEDEIPQLVPIGKKTPANEKVEIQKHAT K A T G K K 1 0 1 1 0 1 3 1 0 2 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1838.9262 O76021;J3QSV6 O76021 357 373 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 4.4701E-08 97.463 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 2 0.78762 0.71562 4.5437 7 Median 0.78762 0.7594 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68402 0.67372 NaN 1 0 Median 0.79051 0.67878 NaN 1 0 Median 0.73335 0.72358 3.9492 2 0 Median 0.86532 0.72465 1.7735 2 0 Median 53658000 29735000 23923000 2472100 1235500 1236600 0 0 0 7976300 4629700 3346600 462000 245730 216270 40404000 22411000 17992000 2344100 1212800 1131200 3242 1716 3379 16980;16981;16982;16983;16984;16985;16986 17486;17487;17488;17489;17490;17491 17491 6 ATNESEDEIPQLVPIGKK EHGKKKRGRGKAQVKATNESEDEIPQLVPI ESEDEIPQLVPIGKKTPANEKVEIQKHATG K A T K K T 1 0 1 1 0 1 3 1 0 2 1 2 0 0 2 1 1 0 0 1 0 0 18 1 1967.0211 O76021;J3QSV6 O76021 357 374 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.05214 8.6005 By MS/MS By matching 1 1 0.49852 0.49459 42.657 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6264 0.66872 NaN 1 0 Median 0.39674 0.36581 NaN 1 0 Median 13977000 8419700 5557600 0 0 0 0 0 0 0 0 0 0 0 0 13663000 8209600 5453500 314280 210150 104130 3243 1716 3380 16987;16988 17492 17492 1 ATNFLAHEK ______________________________ ______________________________ M A T E K I 2 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1029.5243 E9PL71;E9PN91;E9PKK3;E9PNW6;E9PJD0;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 2 10 EEF1D Elongation factor 1-delta no no 2 0.00049451 121.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 6 3 2 1.2287 1.0758 19.11 17 Median 1.3234 1.1779 12.833 2 0 Median 1.2739 1.0908 11.836 2 0 Median 1.3395 1.2902 6.5578 2 0 Median 1.2078 0.98677 21.779 6 2 Median 1.2602 1.2653 6.807 3 2 Median 1.0456 0.87121 18.7 2 0 Median 2887800000 1263200000 1624600000 537720000 247170000 290540000 57437000 24939000 32498000 360000000 140110000 219890000 1841400000 810320000 1031100000 68479000 30779000 37700000 22746000 9846900 12899000 3244 2174;957 3381 16989;16990;16991;16992;16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006 17493;17494;17495;17496;17497;17498;17499;17500;17501;17502;17503;17504;17505;17506;17507;17508;17509;17510;17511;17512;17513;17514;17515;17516;17517;17518 17516 26 ATNIEVLSNTFQFTNEAR VRFNISTDRRDKLERATNIEVLSNTFQFTN IEVLSNTFQFTNEAREMGVIAAMRDGFGFI R A T A R E 2 1 3 0 0 1 2 0 0 1 1 0 0 2 0 1 3 0 0 1 0 0 18 0 2054.0069 O75534;E9PLT0 O75534 331 348 CSDE1 Cold shock domain-containing protein E1 yes no 2 2.5629E-11 106.17 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.2051 1.1622 23.394 6 Median 1.3215 1.299 18.952 2 0 Median 1.1326 1.0262 NaN 1 0 Median 1.417 1.4917 32.079 2 0 Median 1.2185 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12446000 5123700 7322200 6939500 2938900 4000600 896530 382350 514180 3527100 1358500 2168500 1082900 443910 638970 0 0 0 0 0 0 3245 1684 3382 17007;17008;17009;17010;17011;17012 17519;17520;17521;17522 17521 4 ATNMTVSAIR FNPDPKSEYNDQLTRATNMTVSAIRFLKTL DQLTRATNMTVSAIRFLKTLRAGLLEPEVF R A T I R F 2 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 2 0 0 1 0 0 10 0 1062.5492 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 152 161 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.0015287 64.711 By MS/MS 1 1.0444 0.90541 NaN 1 Median NaN NaN NaN 0 0 Median 1.0444 0.90541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4161800 1799800 2362000 0 0 0 4161800 1799800 2362000 0 0 0 0 0 0 0 0 0 0 0 0 3246 317 3383 17013 17523 17523 1 ATNVTYQAHHVSR KVKLSNNAQNWGMQRATNVTYQAHHVSRNK QRATNVTYQAHHVSRNKRGQVVGTRGGFRG R A T S R N 2 1 1 0 0 1 0 0 2 0 0 0 0 0 0 1 2 0 1 2 0 0 13 0 1482.7328 O43252 O43252 25 37 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 0.00056083 64.104 By MS/MS By MS/MS 1 2 1.2685 1.2735 7.5512 3 Plateau 1.2626 1.2735 NaN 1 0 Median 1.2939 1.1224 2.771 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7901400 3788800 4112500 2181800 1114000 1067800 5719600 2674800 3044800 0 0 0 0 0 0 0 0 0 0 0 0 3247 1561 3384 17014;17015;17016 17524;17525;17526;17527 17527 4 ATNVVMNYSEIESK ______________________________ KATNVVMNYSEIESKVREATNDDPWGPSGQ K A T S K V 1 0 2 0 0 0 2 0 0 1 0 1 1 0 0 2 1 0 1 2 0 0 14 0 1583.7501 Q14677 Q14677 14 27 CLINT1 Clathrin interactor 1 yes yes 2 1.7704E-06 84.289 By MS/MS By matching By matching By MS/MS 2 1 1 1 1.0967 1.0807 22.578 4 Linear 1.1246 1.0689 NaN 1 0 Median 0.86055 0.79057 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7097 0.65072 NaN 1 0 Median 0.96122 0.99346 NaN 1 0 Median NaN NaN NaN 0 0 Median 14738000 6834900 7903300 7240700 2986300 4254400 1886200 1053900 832290 0 0 0 832100 473470 358630 4779300 2321300 2458000 0 0 0 3248 2888 3385 17017;17018;17019;17020;17021 17528;17529;17530 17528 3 ATPEQYQILK QDNKCSWLVVQCLQRATPEQYQILKENYGQ QCLQRATPEQYQILKENYGQKEAEKVARVK R A T L K E 1 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 1 0 1 0 0 0 10 0 1189.6343 P14324;A0A087X090 P14324 344 353 FDPS Farnesyl pyrophosphate synthase yes no 2 0.0003634 82.452 By MS/MS By MS/MS 4 2 0.70277 0.64686 66.923 5 Median 0.64937 0.59895 76.244 3 0 Median 0.99277 0.82612 4.5221 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89703000 52021000 37682000 53885000 37010000 16874000 35818000 15010000 20808000 0 0 0 0 0 0 0 0 0 0 0 0 3249 2002 3386 17022;17023;17024;17025;17026;17027 17531;17532;17533;17534;17535 17531 5 ATPLAVNSAASLWGPYK ______________________________ PLAVNSAASLWGPYKDIWHKVGNALWRRQP M A T Y K D 4 0 1 0 0 0 0 1 0 0 2 1 0 0 2 2 1 1 1 1 0 0 17 0 1744.9148 Q92621 Q92621 2 18 NUP205 Nuclear pore complex protein Nup205 yes yes 2 2.1609E-05 62.408 By MS/MS By MS/MS 2 1 0.78048 0.86909 10.136 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75332 0.81031 9.9038 2 0 Median 1.0107 0.91998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7244500 3976100 3268400 0 0 0 0 0 0 6284400 3492600 2791800 960080 483490 476590 0 0 0 0 0 0 3250 3547 3387 17028;17029;17030 17536;17537;17538 17537 3 ATPLAVNSAASLWGPYKDIWHK ______________________________ SAASLWGPYKDIWHKVGNALWRRQPEAVHL M A T H K V 4 0 1 1 0 0 0 1 1 1 2 2 0 0 2 2 1 2 1 1 0 0 22 1 2424.259 Q92621 Q92621 2 23 NUP205 Nuclear pore complex protein Nup205 yes yes 3 2.0247E-12 78.987 By MS/MS By matching 1 1 0.73889 0.84069 7.577 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76623 0.88696 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71252 0.79683 NaN 1 0 Median NaN NaN NaN 0 0 Median 11733000 6298400 5434100 0 0 0 0 0 0 11394000 6109100 5285200 0 0 0 338190 189280 148910 0 0 0 3251 3547 3388 17031;17032 17539 17539 1 ATPMPSRPSTTPFIDK SGTAPAAGVVPSRVKATPMPSRPSTTPFID TPMPSRPSTTPFIDKKPTSAKPSSTTPRLS K A T D K K 1 1 0 1 0 0 0 0 0 1 0 1 1 1 4 2 3 0 0 0 0 0 16 1 1744.8818 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 2036 2051 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 0.00016279 63.864 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 8 8 1 1 0.67654 0.6954 46.781 23 Median 0.44375 0.44591 14.6 3 1 Median 1.3114 1.2417 120.21 2 0 Median 0.7093 0.78986 46.566 8 0 Median 0.70503 0.63433 12.645 8 0 Median 0.52609 0.59526 NaN 1 0 Median 0.99561 0.87374 NaN 1 0 Median 223160000 130920000 92243000 48852000 33517000 15335000 5165100 2466700 2698400 99677000 53712000 45965000 63639000 37655000 25984000 5130100 3225800 1904400 701060 344840 356220 3252 895 3389 17033;17034;17035;17036;17037;17038;17039;17040;17041;17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052;17053;17054;17055 17540;17541;17542;17543;17544;17545;17546;17547;17548;17549;17550;17551;17552;17553;17554;17555;17556;17557;17558;17559 17546 20 ATPSENLVPSSAR PRAHSRDSSDSADGRATPSENLVPSSARVD GRATPSENLVPSSARVDKPPSVLPYFNRPP R A T A R V 2 1 1 0 0 0 1 0 0 0 1 0 0 0 2 3 1 0 0 1 0 0 13 0 1327.6732 Q8N684;F5H669;F5H6M0;F5H047 Q8N684 202 214 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 6.264E-07 131.09 By matching By MS/MS By MS/MS 2 2 3 0.84248 0.72652 39.793 7 Median NaN NaN NaN 0 0 Median 0.54483 0.46742 62.373 2 0 Median 0.83518 0.83366 29.188 2 0 Median 0.94645 0.80903 12.855 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67917000 36714000 31203000 0 0 0 7056600 4716400 2340200 27223000 15411000 11812000 33638000 16587000 17051000 0 0 0 0 0 0 3253 3385 3390 17056;17057;17058;17059;17060;17061;17062 17560;17561;17562;17563;17564;17565;17566;17567;17568 17563 9 ATPYNYPVPVR PPLSPYFKYSVMINKATPYNYPVPVRDDGN MINKATPYNYPVPVRDDGNMPDVPSHPQDP K A T V R D 1 1 1 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 2 2 0 0 11 0 1275.6612 Q6FGG4;O95167;S4R3I5 Q6FGG4 48 58 NDUFA3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 yes no 2 0.00026334 73.26 By MS/MS By MS/MS 1 2 0.97472 0.78838 5.9003 3 Median 0.77573 0.75472 NaN 1 0 Median 0.98785 0.81774 5.1719 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15802000 7384800 8416800 8159600 3681900 4477600 7642100 3702900 3939200 0 0 0 0 0 0 0 0 0 0 0 0 3254 1750 3391 17063;17064;17065 17569;17570;17571;17572;17573;17574 17574 6 ATQALVLAPTR TFAISILQQIELDLKATQALVLAPTRELAQ LDLKATQALVLAPTRELAQQIQKVVMALGD K A T T R E 3 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1139.6663 P60842;J3KT12;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 100 110 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.00013505 112.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 3 4 7 1.0594 0.95034 37.383 23 Median 1.0582 1.0188 3.2739 2 0 Median 1.0426 0.88265 8.1298 5 0 Median 1.0712 1.1004 19.454 2 0 Median 1.011 0.80799 10.878 3 0 Median 2.1962 2.2751 11.279 4 2 Median 1.015 0.8715 14.102 7 2 Median 558470000 271440000 287030000 117720000 56217000 61499000 139050000 69554000 69495000 121650000 55478000 66172000 151890000 78445000 73448000 9256400 2716000 6540400 18906000 9031300 9874500 3255 2529 3392 17066;17067;17068;17069;17070;17071;17072;17073;17074;17075;17076;17077;17078;17079;17080;17081;17082;17083;17084;17085;17086;17087;17088 17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585;17586;17587;17588;17589;17590;17591;17592;17593;17594;17595;17596;17597;17598;17599;17600;17601;17602;17603 17575 29 ATQELIPIEDFITPLK EAKERLKRKIRKLEKATQELIPIEDFITPL TQELIPIEDFITPLKFLDKARERPQVELTF K A T L K F 1 0 0 1 0 1 2 0 0 3 2 1 0 1 2 0 2 0 0 0 0 0 16 0 1827.003 Q9NQ50 Q9NQ50 78 93 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 2 0.00067758 43.68 By MS/MS By matching By matching By matching 2 2 1 1 0.88243 0.78331 18.182 6 Median 0.69635 0.65344 6.0048 2 0 Median 1.0693 0.92564 0.76749 2 0 Median 0.73961 0.67745 NaN 1 0 Median 1.1012 0.89997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10748000 5820000 4927700 9086300 5030300 4056000 1022700 487400 535270 363100 184160 178940 275630 118160 157470 0 0 0 0 0 0 3256 4060 3393 17089;17090;17091;17092;17093;17094 17604 17604 1 ATQEWLEK QLQDALNELTEEHSKATQEWLEKQAQLEKE LTEEHSKATQEWLEKQAQLEKELSAALQDK K A T E K Q 1 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 1003.4975 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 351 358 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0023526 114.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0502 0.96519 8.8434 5 Median NaN NaN NaN 0 0 Median 1.087 0.96519 NaN 1 0 Median 0.90406 0.99393 NaN 1 0 Median 1.0502 0.9498 NaN 1 0 Median 0.83541 0.87486 NaN 1 0 Median 1.304 1.1166 NaN 1 0 Median 69898000 33127000 36771000 0 0 0 3432500 1861100 1571400 35733000 17675000 18059000 2517200 1087400 1429700 15711000 7952900 7758300 12504000 4550700 7953400 3257 2905;77 3394 17095;17096;17097;17098;17099 17605;17606;17607;17608;17609;17610;17611;17612;17613 17605 9 ATQFTGATGAIMTTETTK MDGRWEEHRSLLSGRATQFTGATGAIMTTE FTGATGAIMTTETTKTARATGASRDMAGAQ R A T T K T 3 0 0 0 0 1 1 2 0 1 0 1 1 1 0 0 7 0 0 0 0 0 18 0 1828.8877 Q14126 Q14126 729 746 DSG2 Desmoglein-2 yes yes 2 8.2483E-14 141.46 By matching By MS/MS 1 3 0.90595 0.93652 7.3239 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78607 0.86301 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91996 0.96297 5.8307 3 0 Median NaN NaN NaN 0 0 Median 31224000 16480000 14744000 0 0 0 0 0 0 3319500 2257700 1061800 0 0 0 27904000 14222000 13682000 0 0 0 3258 2855 3395 17100;17101;17102;17103 17614;17615;17616;17617 17614 4 ATQGEQDNYEMHVR IIKTAKIEDETQVSRATQGEQDNYEMHVRA RATQGEQDNYEMHVRAANIVRAGESLMKLV R A T V R A 1 1 1 1 0 2 2 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 14 0 1676.7213 E9PGW7;Q5T8T7;E7EN96;Q5T8T8;Q15528 E9PGW7 51 64 MED22 Mediator of RNA polymerase II transcription subunit 22 yes no 3 0.00043574 47.666 By MS/MS By MS/MS 1 1 1.2582 1.2614 23.812 2 Median 1.5027 1.4927 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0535 1.0659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3820800 1548700 2272200 1290600 404430 886130 0 0 0 2530300 1144200 1386000 0 0 0 0 0 0 0 0 0 3259 862 3396 17104;17105 17618;17619;17620 17619 3 ATQLLEGLVQELQK AWDSVDLDNPQENIKATQLLEGLVQELQKK KATQLLEGLVQELQKKAEHQVGEDGFLLKI K A T Q K K 1 0 0 0 0 3 2 1 0 0 4 1 0 0 0 0 1 0 0 1 0 0 14 0 1568.8774 P51692;C9J4I3 P51692 57 70 STAT5B Signal transducer and activator of transcription 5B yes no 2 0.00078971 79.741 By matching By MS/MS 1 2 1.1263 0.97016 1.444 3 Plateau 0.95934 0.97016 NaN 1 0 Median 1.1115 0.97121 2.0402 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15165000 7134300 8030400 1083900 550120 533810 14081000 6584200 7496600 0 0 0 0 0 0 0 0 0 0 0 0 3260 2441 3397 17106;17107;17108 17621;17622 17621 1 ATQLQGDEEPSAPPTSTQAQQK YQLVLEEEETIEFVRATQLQGDEEPSAPPT EEPSAPPTSTQAQQKESIQAVRRSLPVFPF R A T Q K E 3 0 0 1 0 5 2 1 0 0 1 1 0 0 3 2 3 0 0 0 0 0 22 0 2311.0928 O60231;A0A140T947 O60231 368 389 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 0.038586 11.143 By matching By MS/MS 1 1 0.93033 0.79516 29.408 2 Median NaN NaN NaN 0 0 Median 1.1219 0.97897 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77149 0.64587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3737600 1692700 2044900 0 0 0 2769300 1140000 1629300 0 0 0 968280 552720 415560 0 0 0 0 0 0 3261 1605 3398 17109;17110 17623 17623 1 ATQMPEGGQGAPPMYQLYK ACELLHSMVMFMLGKATQMPEGGQGAPPMY PEGGQGAPPMYQLYKRTFPVLLRLACDVDQ K A T Y K R 2 0 0 0 0 3 1 3 0 0 1 1 2 0 3 0 1 0 2 0 0 0 19 0 2065.9601 P78527 P78527 945 963 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.8156E-18 119.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 1 6 7 2 0.74371 0.74252 22.99 21 Median 0.74371 0.74252 13.814 5 1 Median 0.9456 0.82674 NaN 1 0 Median 0.55501 0.59345 8.5111 6 0 Median 0.95194 0.90459 16.397 7 0 Median 0.5538 0.58161 4.3679 2 0 Median NaN NaN NaN 0 0 Median 262650000 160370000 102280000 101110000 61001000 40113000 2306100 1284400 1021800 139130000 86955000 52177000 9028400 4545400 4482900 11071000 6584800 4486100 0 0 0 3262 2647 3399;3400 17111;17112;17113;17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125;17126;17127;17128;17129;17130;17131 17624;17625;17626;17627;17628;17629;17630;17631;17632;17633;17634;17635;17636;17637;17638;17639;17640;17641;17642;17643;17644;17645;17646;17647;17648;17649;17650 17631 1311;1312 27 ATQMPEGGQGAPPMYQLYKR ACELLHSMVMFMLGKATQMPEGGQGAPPMY EGGQGAPPMYQLYKRTFPVLLRLACDVDQV K A T K R T 2 1 0 0 0 3 1 3 0 0 1 1 2 0 3 0 1 0 2 0 0 0 20 1 2222.0612 P78527 P78527 945 964 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 6.8198E-09 69.522 By matching By MS/MS 1 2 0.75242 0.7789 23.997 3 Median 0.75242 0.7789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62321 0.72185 33.363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23543000 14527000 9016100 8394100 4891800 3502300 0 0 0 15149000 9635100 5513800 0 0 0 0 0 0 0 0 0 3263 2647 3401;3402 17132;17133;17134 17651;17652;17653 17653 1311;1312 3 ATQPETTEEVTDLKR RKRSHPSGSGAKKEKATQPETTEEVTDLKR ATQPETTEEVTDLKRQAVEEMMDRIKKGVH K A T K R Q 1 1 0 1 0 1 3 0 0 0 1 1 0 0 1 0 4 0 0 1 0 0 15 1 1716.853 A0MZ66 A0MZ66 393 407 KIAA1598 Shootin-1 yes yes 3 8.1067E-05 54.7 By MS/MS By matching 2 1 0.70759 0.72538 8.0693 3 Median 0.70183 0.71504 2.0298 2 0 Median 0.81785 0.82047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7159000 3833600 3325400 6069900 3370900 2699000 1089100 462770 626310 0 0 0 0 0 0 0 0 0 0 0 0 3264 490 3403 17135;17136;17137 17654;17655 17654 2 ATQQQHDFTLTQTADGR EGSLSARWPVAGQIRATQQQHDFTLTQTAD QQQHDFTLTQTADGRSSFDWLTGSSTDPLV R A T G R S 2 1 0 2 0 4 0 1 1 0 1 0 0 1 0 0 4 0 0 0 0 0 17 0 1916.8977 P78527 P78527 2637 2653 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.794E-190 321.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 3 3 4 1.0274 1.0696 15.959 20 Median 1.0051 0.95328 4.0557 4 1 Median 1.4552 1.159 17.757 3 0 Median 0.94354 1.0065 10.276 4 0 Median 1.4642 1.2932 3.3122 3 0 Median 0.95118 0.96211 13.262 3 0 Median 1.5527 1.2801 8.4147 3 1 Plateau 878220000 408480000 469730000 154650000 75071000 79576000 202050000 82349000 119700000 295160000 151900000 143260000 120600000 48435000 72165000 78325000 40640000 37685000 27437000 10088000 17350000 3265 2647 3404 17138;17139;17140;17141;17142;17143;17144;17145;17146;17147;17148;17149;17150;17151;17152;17153;17154;17155;17156;17157;17158 17656;17657;17658;17659;17660;17661;17662;17663;17664;17665;17666;17667;17668;17669;17670;17671;17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684;17685;17686;17687;17688;17689;17690;17691;17692;17693;17694;17695;17696;17697;17698;17699;17700 17681 45 ATQSYLQEK QEYEKQWKTWQGHMKATQSYLQEKVNSFQN WQGHMKATQSYLQEKVNSFQNMKNQYMGNM K A T E K V 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1066.5295 P49750;F8VU51;H0YIQ2 P49750 491 499 YLPM1 YLP motif-containing protein 1 yes no 2 0.032216 48.283 By MS/MS 1 1.4469 1.529 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4469 1.529 NaN 1 1 Median NaN NaN NaN 0 0 Median 2434000 1102100 1332000 0 0 0 0 0 0 0 0 0 0 0 0 2434000 1102100 1332000 0 0 0 3266 2395 3405 17159 17701 17701 1 ATQTHVEAVYSR ATFLSHVLDLVSHPRATQTHVEAVYSRRCV HPRATQTHVEAVYSRRCVSFILRATVGSLL R A T S R R 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 2 0 1 2 0 0 12 0 1360.6735 Q9P2D3 Q9P2D3 343 354 HEATR5B HEAT repeat-containing protein 5B yes yes 3 0.062354 12.383 By MS/MS 1 1.081 0.94961 NaN 1 Median NaN NaN NaN 0 0 Median 1.081 0.94961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 552520 262920 289610 0 0 0 552520 262920 289610 0 0 0 0 0 0 0 0 0 0 0 0 3267 4221 3406 17160 17702 17702 1 ATRPEELLELLGGSHDLDSNQAAMVLIR STPYIEKQVDHLIKKATRPEELLELLGGSH SHDLDSNQAAMVLIRLSHLLSEKPEDKGLL K A T I R L 3 2 1 2 0 1 3 2 1 1 6 0 1 0 1 2 1 0 0 1 0 0 28 1 3047.571 Q969Z0;C9J7P5;C9J5A2;C9J347 Q969Z0 79 106 TBRG4 Protein TBRG4 yes no 3;4 1.8327E-20 64.733 By MS/MS 2 0.87219 0.79213 1.2476 2 Median NaN NaN NaN 0 0 Median 0.87219 0.79213 1.2476 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5431700 2719300 2712500 0 0 0 5431700 2719300 2712500 0 0 0 0 0 0 0 0 0 0 0 0 3268 3591 3407 17161;17162 17703;17704;17705 17705 3 ATSEIFHSQSFLATGSNLR RRLLEEEIIAFSKKKATSEIFHSQSFLATG IFHSQSFLATGSNLRKDKDRKK________ K A T L R K 2 1 1 0 0 1 1 1 1 1 2 0 0 2 0 4 2 0 0 0 0 0 19 0 2065.0229 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 425 443 SEPT10 Septin-10 yes no 3 1.0726E-18 124.84 By MS/MS By MS/MS 2 2 0.85728 0.78404 9.8245 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73269 0.7263 3.8607 2 0 Median 0.98561 0.8514 4.7001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49391000 25984000 23407000 0 0 0 0 0 0 43196000 23044000 20152000 6194800 2939600 3255200 0 0 0 0 0 0 3269 626 3408 17163;17164;17165;17166 17706;17707;17708;17709;17710 17708 5 ATSEVPGSQASPNPVPGDGLHR LEMGIKAARPEIADRATSEVPGSQASPNPV SQASPNPVPGDGLHRAGFDAFMTGYVMAYV R A T H R A 2 1 1 1 0 1 1 3 1 0 1 0 0 0 4 3 1 0 0 2 0 0 22 0 2172.056 Q96GM8 Q96GM8 418 439 TOE1 Target of EGR1 protein 1 yes yes 3 1.155E-09 58.366 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.62541 0.52291 28.858 5 Median 0.98111 0.94012 NaN 1 1 Median 0.86409 0.7448 NaN 1 0 Median 0.47861 0.47791 NaN 1 0 Median 0.61801 0.52259 0.08477 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33123000 18809000 14315000 7996400 3806700 4189700 1342300 761010 581290 13161000 8022000 5139300 10623000 6218800 4404400 0 0 0 0 0 0 3270 3660 3409 17167;17168;17169;17170;17171 17711;17712;17713;17714;17715;17716;17717 17712 7 ATSFLLALEPELEAR AEVVLAHLGGGSTSRATSFLLALEPELEAR ATSFLLALEPELEARLAHLGVQVKGEDEEE R A T A R L 3 1 0 0 0 0 3 0 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1658.8879 P04843;F8WF32 P04843 66 80 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 9.3738E-05 80.979 By MS/MS By matching By matching By matching By MS/MS 3 2 1 1 4 1.0336 0.90663 19.573 11 Median 0.91266 0.9109 12.129 3 0 Median 1.2415 1.0928 28.461 2 0 Median 0.64864 0.66628 NaN 1 0 Median 1.2396 1.0542 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0713 0.87436 17.278 4 0 Median 37021000 18175000 18846000 17038000 8756300 8282100 16752000 7790700 8961600 204800 114280 90521 356320 176990 179340 0 0 0 2669300 1336700 1332600 3271 1853 3410 17172;17173;17174;17175;17176;17177;17178;17179;17180;17181;17182 17718;17719;17720;17721;17722;17723;17724 17723 7 ATSILEFYR ATLSVGGKTVSRFRKATSILEFYRELGLPP VSRFRKATSILEFYRELGLPPKQTVKIFNI K A T Y R E 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1098.571 H0Y9G6;E7ETU7;P09001;D6RC14;E9PF06 H0Y9G6 173 181 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.034001 35.295 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.1675 1.1024 14.661 5 Median 1.082 1.0112 NaN 1 0 Median 1.2758 1.069 NaN 1 0 Median 1.1221 1.1024 NaN 1 0 Median 1.7338 1.4714 NaN 1 0 Median 1.1675 1.2027 NaN 1 0 Median NaN NaN NaN 0 0 Median 15409000 7103300 8305200 9313700 4494100 4819600 2887500 1250300 1637100 2659800 1119300 1540500 133640 53549 80091 413930 186020 227900 0 0 0 3272 889 3411 17183;17184;17185;17186;17187 17725 17725 1 ATSLAWHPTHPSTVAVGSK DSYRILQKAAPFDRRATSLAWHPTHPSTVA AWHPTHPSTVAVGSKGGDIMLWNFGIKDKP R A T S K G 3 0 0 0 0 0 0 1 2 0 1 1 0 0 2 3 3 1 0 2 0 0 19 0 1946.001 Q92466;A0A087X0X5;A0A087WW71;A0A087WYT8 Q92466 114 132 DDB2 DNA damage-binding protein 2 yes no 3;4 5.7729E-15 88.486 By matching By MS/MS By MS/MS 1 6 4 0.71936 0.76636 31.326 11 Median 0.77172 0.76636 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62255 0.618 17.19 6 0 Median 1.2361 1.0486 21.458 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 381630000 220230000 161400000 4392300 2495700 1896600 0 0 0 240890000 150880000 90006000 136350000 66856000 69497000 0 0 0 0 0 0 3273 3527 3412 17188;17189;17190;17191;17192;17193;17194;17195;17196;17197;17198 17726;17727;17728;17729;17730;17731;17732;17733;17734;17735;17736;17737;17738;17739;17740;17741 17738 15 ATSLGRPEEEEDELAHR HVQRAEMLPKTSGTRATSLGRPEEEEDELA SLGRPEEEEDELAHRCSSFMAPPVTDLGEL R A T H R C 2 2 0 1 0 0 5 1 1 0 2 0 0 0 1 1 1 0 0 0 0 0 17 1 1937.9079 P36551;D6RER6 P36551 110 126 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes no 3 1.1254E-07 91.657 By matching By MS/MS By MS/MS 1 1 2 0.88774 0.91818 13.161 4 Median 0.72808 0.76607 NaN 1 0 Median 1.1303 1.0555 NaN 1 0 Median 0.88774 0.91818 1.265 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22330000 11709000 10620000 6293100 3501500 2791600 5982200 3143000 2839200 10054000 5064900 4989300 0 0 0 0 0 0 0 0 0 3274 2259 3413 17199;17200;17201;17202 17742;17743;17744 17744 3 ATSLGSNTYNR ______________________________ ______________________________ M A T N R Q 1 1 2 0 0 0 0 1 0 0 1 0 0 0 0 2 2 0 1 0 0 0 11 0 1182.5629 Q9NW64;E5RJW4 Q9NW64 2 12 RBM22 Pre-mRNA-splicing factor RBM22 yes no 2 0.0001691 105.4 By matching By MS/MS By matching By MS/MS By matching 1 1 2 3 2 1.0304 1.0343 17.157 9 Median 1.3716 1.2885 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97477 0.97382 NaN 1 0 Median 1.09 0.90461 31.758 2 0 Median 1.0304 1.0343 4.9715 3 0 Median 1.1324 0.9447 18.141 2 0 Median 29097000 13519000 15578000 139310 78869 60438 0 0 0 6229300 3092400 3136800 5646300 2405300 3241000 14823000 6860500 7962100 2259800 1082200 1177600 3275 4146 3414 17203;17204;17205;17206;17207;17208;17209;17210;17211 17745;17746;17747;17748 17747 4 ATSLHEGPTNQLDLLIR ______________________________ SLHEGPTNQLDLLIRAVEASVHSSNAHCTD M A T I R A 1 1 1 1 0 1 1 1 1 1 4 0 0 0 1 1 2 0 0 0 0 0 17 0 1877.0007 D6RHI1;D6R9B1 D6RHI1 2 18 ELF2 yes no 2 2.1609E-05 62.408 By MS/MS By matching 1 1 0.72874 0.69867 3.6359 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67565 0.71687 NaN 1 0 Median 0.786 0.68094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2045600 1218000 827630 0 0 0 0 0 0 1875000 1114800 760210 170590 103170 67416 0 0 0 0 0 0 3276 801 3415 17212;17213 17749 17749 1 ATSNVFAMFDQSQIQEFK SSKRTKTKTKKRPQRATSNVFAMFDQSQIQ NVFAMFDQSQIQEFKEAFNMIDQNRDGFID R A T F K E 2 0 1 1 0 3 1 0 0 1 0 1 1 3 0 2 1 0 0 1 0 0 18 0 2089.9779 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3 23 40 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 3 0.013703 20.368 By matching By matching By MS/MS By matching 1 1 1 1 1.0606 0.94229 2.5635 4 Median 1.0024 0.94669 NaN 1 0 Median 1.1221 0.97752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80516 0.9192 NaN 1 0 Median 1.1815 0.9379 NaN 1 0 Median 5398400 2874900 2523600 141250 75116 66135 882540 392120 490420 0 0 0 0 0 0 2307300 1298900 1008400 2067300 1108700 958600 3277 1352;2127 3416 17214;17215;17216;17217 17750 17750 1 ATSPSSSVSGDFDDGHHSVSTPGPSR ______________________________ FDDGHHSVSTPGPSRKRRRLSNLPTVDPIA R A T S R K 1 1 0 3 0 0 0 3 2 0 0 0 0 1 3 8 2 0 0 2 0 0 26 0 2570.127 Q86U86;E7EVG2;C9JPI5;C9JQF1;C9J053;C9J409;C9JCJ2 Q86U86 8 33 PBRM1 Protein polybromo-1 yes no 3;4 1.6791E-08 41.763 By MS/MS By MS/MS 2 2 0.64787 0.63463 31.584 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46667 0.50966 6.1898 2 0 Median 0.9712 0.85374 17.122 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41771000 26874000 14897000 0 0 0 0 0 0 35370000 23623000 11747000 6400100 3250500 3149600 0 0 0 0 0 0 3278 3273 3417 17218;17219;17220;17221 17751;17752;17753;17754;17755 17753 5 ATSQSLVILDELGR TFMEELTDTAEIIRKATSQSLVILDELGRG KATSQSLVILDELGRGTSTHDGIAIAYATL K A T G R G 1 1 0 1 0 1 1 1 0 1 3 0 0 0 0 2 1 0 0 1 0 0 14 0 1500.8148 P20585;A0A590UJW0;A0A590UJN8 P20585 966 979 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.00078102 68.069 By MS/MS 1 1.1385 1.2447 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1385 1.2447 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2148500 1062700 1085800 0 0 0 0 0 0 2148500 1062700 1085800 0 0 0 0 0 0 0 0 0 3279 2080 3418 17222 17756 17756 1 ATSSSSGSLSATGR LKLSPSPSSRVTVSRATSSSSGSLSATGRL RATSSSSGSLSATGRLGRSKRKRLEVEEPL R A T G R L 2 1 0 0 0 0 0 2 0 0 1 0 0 0 0 6 2 0 0 0 0 0 14 0 1267.6004 Q03252 Q03252 417 430 LMNB2 Lamin-B2 yes yes 2 6.5451E-08 101.93 By MS/MS By matching By MS/MS By MS/MS 1 1 4 4 1.1477 1.1032 13.634 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0633 1.1143 NaN 1 0 Median 1.5983 1.374 NaN 1 0 Median 0.93072 0.97837 2.5897 4 0 Median 1.4184 1.1906 8.4585 4 0 Median 8848300 4042200 4806100 0 0 0 0 0 0 1211000 537020 673960 230790 98564 132220 4874500 2440600 2433900 2532000 965980 1566000 3280 2709 3419 17223;17224;17225;17226;17227;17228;17229;17230;17231;17232 17757;17758;17759;17760;17761;17762;17763;17764;17765 17764 9 ATSSTQSLAR FYSTRSAPASQASLRATSSTQSLARLGSPD QASLRATSSTQSLARLGSPDYGNSALLSLP R A T A R L 2 1 0 0 0 1 0 0 0 0 1 0 0 0 0 3 2 0 0 0 0 0 10 0 1020.52 A0A087WY61;Q14980 Q14980 1850 1859 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.071385 25.559 By MS/MS By matching By matching 1 1 2 1.1258 1.2115 12.128 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0315 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1654 1.2093 NaN 1 0 Median 1.1971 0.99617 11.934 2 0 Median 1867900 878230 989670 0 0 0 0 0 0 564610 275160 289450 0 0 0 968120 445510 522600 335180 157550 177620 3281 2905;77 3420 17233;17234;17235;17236 17766 17766 1 ATSTATSGFAGAIGQK KIDSEGGVSANHTSRATSTATSGFAGAIGQ TSTATSGFAGAIGQKLPPFSYAYTELEAIM R A T Q K L 4 0 0 0 0 1 0 3 0 1 0 1 0 1 0 2 3 0 0 0 0 0 16 0 1466.7365 A0A2R8YD50;P51659;E7EWE5;E7ER27;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 316 331 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 5.0294E-10 146.16 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1.3271 1.1664 16.918 9 Median 1.0892 1.0054 0.22141 2 0 Median 1.494 1.2962 15.691 2 0 Median 1.201 1.1664 22.98 3 0 Median 1.4141 1.2482 8.1959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98158000 42373000 55785000 17827000 8234500 9592900 7303900 2846500 4457400 42878000 19265000 23613000 30149000 12027000 18122000 0 0 0 0 0 0 3282 393 3421 17237;17238;17239;17240;17241;17242;17243;17244;17245 17767;17768;17769;17770;17771;17772;17773;17774;17775;17776;17777;17778;17779;17780;17781;17782 17772 16 ATSTSDMLLK ISNSDGTRPVGMLGKATSTSDMLLKLARTT GMLGKATSTSDMLLKLARTTPYYKRNRPHI K A T L K L 1 0 0 1 0 0 0 0 0 0 2 1 1 0 0 2 2 0 0 0 0 0 10 0 1065.5376 Q9NW64;E5RJW4 Q9NW64 140 149 RBM22 Pre-mRNA-splicing factor RBM22 yes no 2 0.0084719 46.462 By MS/MS 1 0.8697 0.89453 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8697 0.89453 NaN 1 0 Median NaN NaN NaN 0 0 Median 3661200 1797100 1864200 0 0 0 0 0 0 0 0 0 0 0 0 3661200 1797100 1864200 0 0 0 3283 4146 3422 17246 17783 17783 1 ATTADGSSILDR NQLQEFAAMLMPHQKATTADGSSILDRAVI HQKATTADGSSILDRAVIEHNLLSASKLYN K A T D R A 2 1 0 2 0 0 0 1 0 1 1 0 0 0 0 2 2 0 0 0 0 0 12 0 1205.5888 D6RAX7;Q9BT78;D6RD63 D6RAX7 291 302 COPS4 COP9 signalosome complex subunit 4 yes no 2 0.00029009 83 By MS/MS By MS/MS 1 1 1.4377 1.3986 7.9609 2 Median NaN NaN NaN 0 0 Median 1.6951 1.4796 NaN 1 0 Median 1.2193 1.322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13424000 6080000 7344300 0 0 0 7431200 3064400 4366800 5993000 3015500 2977500 0 0 0 0 0 0 0 0 0 3284 813 3423 17247;17248 17784;17785;17786 17784 3 ATTATMATSGSAR ______________________________ ______________________________ M A T A R K 4 1 0 0 0 0 0 1 0 0 0 0 1 0 0 2 4 0 0 0 0 0 13 0 1224.5768 P38919;I3L3H2 P38919 2 14 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 6.1816E-23 164.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 5 6 1.1603 1.2629 26.316 18 Plateau 1.405 1.3259 NaN 1 0 Median 2.0623 1.7678 1.9503 2 0 Median 1.1628 1.138 11.597 3 2 Median 1.2476 1.0717 NaN 1 0 Median 0.99579 1.0363 10.786 5 1 Median 1.3855 0.96054 28.866 6 1 Plateau 190320000 84713000 105610000 24068000 9752600 14315000 17810000 6607100 11203000 30689000 14301000 16388000 41623000 18056000 23567000 45778000 23260000 22517000 30352000 12736000 17617000 3285 2278 3424;3425 17249;17250;17251;17252;17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264;17265;17266 17787;17788;17789;17790;17791;17792;17793;17794;17795;17796;17797;17798;17799;17800;17801;17802;17803 17789 1031 16 ATTLPTDFNYNVDTLVQLHLKPGTR ATILTKSTLENQNWRATTLPTDFNYNVDTL NVDTLVQLHLKPGTRLLKMAQGHRVETEHY R A T T R L 1 1 2 2 0 1 0 1 1 0 4 1 0 1 2 0 5 0 1 2 0 0 25 1 2813.4712 E9PHA2;Q15003;C9J470 E9PHA2 494 518 NCAPH Condensin complex subunit 2 yes no 4 0.0026027 24.927 By MS/MS 1 0.66346 0.66175 NaN 1 Median NaN NaN NaN 0 0 Median 0.66346 0.66175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3560700 2249700 1310900 0 0 0 3560700 2249700 1310900 0 0 0 0 0 0 0 0 0 0 0 0 3286 929 3426 17267 17804 17804 1 ATTLSNAVSSLASTGLSLTK SLEGKKIKDSTAASRATTLSNAVSSLASTG NAVSSLASTGLSLTKVDEREKQAALEEEQA R A T T K V 3 0 1 0 0 0 0 1 0 0 4 1 0 0 0 5 4 0 0 1 0 0 20 0 1921.0368 Q13492 Q13492 299 318 PICALM Phosphatidylinositol-binding clathrin assembly protein yes yes 2 2.8559E-08 67.115 By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 2 1.1848 1.0327 57.605 7 Median 1.0754 1.0327 NaN 1 0 Median 1.1059 0.95023 NaN 1 0 Median 0.59946 0.62217 111.97 2 0 Median 1.1848 1.0179 NaN 1 0 Median 1.4965 1.4606 3.6084 2 0 Median NaN NaN NaN 0 0 Median 9950800 4823700 5127100 3975900 1931600 2044300 3316800 1649500 1667300 1330400 748720 581650 258340 107230 151110 1069400 386680 682700 0 0 0 3287 2820 3427 17268;17269;17270;17271;17272;17273;17274 17805;17806;17807 17805 3 ATTPASTANSDVATIPTDTPLKEENEGFVK SLKDELSDVSQGGSKATTPASTANSDVATI PTDTPLKEENEGFVKVTDAPNKSEISKHIE K A T V K V 4 0 2 2 0 0 3 1 0 1 1 2 0 1 3 2 6 0 0 2 0 0 30 1 3103.5197 A0A087X2D8;O60271 A0A087X2D8 260 289 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 2.7007E-15 62.052 By MS/MS By MS/MS 2 1 0.63558 0.64932 7.0417 3 Median 0.61588 0.6269 4.9697 2 0 Median 0.73188 0.69679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69943000 41768000 28175000 65951000 39573000 26379000 3991800 2195000 1796800 0 0 0 0 0 0 0 0 0 0 0 0 3288 134 3428 17275;17276;17277 17808;17809;17810;17811;17812;17813 17808 6 ATTQILEELKK DLLKSSKEELNNSLKATTQILEELKKTKMD NSLKATTQILEELKKTKMDNLKYVNQLKKE K A T K K T 1 0 0 0 0 1 2 0 0 1 2 2 0 0 0 0 2 0 0 0 0 0 11 1 1272.7289 P49454;A0A087WTY4 P49454 2762 2772 CENPF Centromere protein F yes no 2 0.007781 46.033 By MS/MS 1 1.5352 1.7424 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5352 1.7424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6325300 2463800 3861600 0 0 0 0 0 0 6325300 2463800 3861600 0 0 0 0 0 0 0 0 0 3289 2383 3429 17278 17814 17814 1 ATTVPDFQETRPR ACKARLKKAKAAEAKATTVPDFQETRPRNY AKATTVPDFQETRPRNYILSASASALWNDE K A T P R N 1 2 0 1 0 1 1 0 0 0 0 0 0 1 2 0 3 0 0 1 0 0 13 1 1516.7634 B7ZC38;Q9NR46 B7ZC38 186 198 SH3GLB2 Endophilin-B2 yes no 3 0.0013297 41.644 By MS/MS By MS/MS 1 1 0.88515 0.84471 13.065 2 Median 0.76266 0.77017 NaN 1 0 Median 1.0273 0.92646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9965600 5011700 4953900 6726900 3349200 3377700 3238700 1662500 1576200 0 0 0 0 0 0 0 0 0 0 0 0 3290 641 3430 17279;17280 17815;17816 17815 2 ATVAAFAASEGHSHPR DISSSPEVRANATAKATVAAFAASEGHSHP TVAAFAASEGHSHPRVVELPKTEEGLGFNI K A T P R V 5 1 0 0 0 0 1 1 2 0 0 0 0 1 1 2 1 0 0 1 0 0 16 0 1607.7805 Q9NUP9;O14910;H0YIA8;H0YI92 Q9NUP9 77 92 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 3;4 1.2757E-10 106.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 2 0.91637 0.84055 28.063 15 Median 0.76104 0.72285 36.021 3 0 Median 0.9755 0.8249 25.909 3 0 Median 0.85673 0.82291 2.9994 2 0 Median 1.1151 0.92651 8.3377 2 0 Median 0.91637 0.91924 18.685 3 1 Median 1.2509 1.0134 8.032 2 0 Median 107670000 54309000 53364000 30233000 16620000 13613000 12125000 5695000 6430300 34753000 17458000 17295000 15233000 7258100 7975400 12219000 6086700 6132000 3109300 1191300 1918000 3291 4117 3431 17281;17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295 17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838 17818 22 ATVASDQIEMNR QKGKAALAATLEEYKATVASDQIEMNRLKA EYKATVASDQIEMNRLKAQLENEKQKVAEL K A T N R L 2 1 1 1 0 1 1 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 12 0 1333.6296 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 586 597 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 2 1.7424E-05 97.456 By MS/MS 1 0.68769 0.58564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68769 0.58564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2015000 1170600 844410 0 0 0 0 0 0 0 0 0 2015000 1170600 844410 0 0 0 0 0 0 3292 469 3432 17296 17839 17839 1 ATVEELKEK DHLMGKQHMGYAKIKATVEELKEKLRKRTE GYAKIKATVEELKEKLRKRTEEPDRDERLK K A T E K L 1 0 0 0 0 0 3 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 9 1 1045.5655 J3KPP4;O95232;H0YA81 J3KPP4 225 233 LUC7L3 Luc7-like protein 3 yes no 2 0.014287 67.993 By matching By matching By matching By MS/MS By matching 1 1 1 1 2 1.086 1.0364 15.116 6 Median 1.0103 0.98116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1558 1.2106 NaN 1 0 Median 1.0952 1.0947 NaN 1 0 Median 1.1226 1.198 NaN 1 0 Median 1.0136 0.88487 11.486 2 0 Median 14864000 7107600 7755900 894350 439960 454400 0 0 0 4664100 2174000 2490100 222390 109530 112860 8127300 3930300 4197000 955290 453830 501460 3293 1309 3433 17297;17298;17299;17300;17301;17302 17840;17841 17841 2 ATVELYEDRK HLFHMLFELFKNSMRATVELYEDRKEGYPA KNSMRATVELYEDRKEGYPAVKTLVTLGKE R A T R K E 1 1 0 1 0 0 2 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 1 1222.6194 Q15120 Q15120 255 264 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2;3 0.00061778 74.464 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 3 2 2 1 1 1.1164 1.1298 24.308 11 Median 0.91631 0.92963 8.286 2 0 Median 1.322 1.2048 37.754 3 0 Median 0.97453 0.98615 19.229 2 0 Median 1.4374 1.3807 2.9164 2 0 Median 0.83136 0.8615 NaN 1 0 Median 1.2781 1.163 NaN 1 0 Median 17146000 7993400 9152400 2740900 1488100 1252800 1846300 710880 1135400 3906200 1993500 1912700 5795200 2252000 3543200 1053100 637810 415330 1804100 911100 892980 3294 2929 3434 17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313 17842;17843;17844;17845;17846;17847;17848;17849;17850;17851 17849 10 ATVEQLMFEEK KISLEEQLKKETAAKATVEQLMFEEKNKAQ TAAKATVEQLMFEEKNKAQRLQTELDVSEQ K A T E K N 1 0 0 0 0 1 3 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1323.6381 Q15276;K7ENJ9 Q15276 791 801 RABEP1 Rab GTPase-binding effector protein 1 yes no 2 0.018428 54.416 By MS/MS 1 1.2306 1.2208 NaN 1 Median 1.2306 1.2208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2502600 983160 1519400 2502600 983160 1519400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3295 2937 3435 17314 17852 17852 1 ATVGILITTIASK SECLNNIGDSSPLIRATVGILITTIASKGE IRATVGILITTIASKGELQNWPDLLPKLCS R A T S K G 2 0 0 0 0 0 0 1 0 3 1 1 0 0 0 1 3 0 0 1 0 0 13 0 1286.781 Q92973 Q92973 116 128 TNPO1 Transportin-1 yes yes 2 0.0010879 59.542 By MS/MS By MS/MS By matching 2 1 1 1.2951 1.2435 15.477 4 Median 1.2951 1.2643 13.831 2 0 Median 1.1425 0.99801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5395 1.3487 NaN 1 0 Median 12770000 5973500 6796200 5944800 2870400 3074300 6738500 3070300 3668300 0 0 0 0 0 0 0 0 0 86393 32764 53629 3296 3570 3436 17315;17316;17317;17318 17853;17854 17854 2 ATVIPGPLSLGEDFYR ______________________________ TVIPGPLSLGEDFYREAIEHCRSYNARLCA M A T Y R E 1 1 0 1 0 0 1 2 0 1 2 0 0 1 2 1 1 0 1 1 0 0 16 0 1733.8988 C8C3P2 C8C3P2 2 17 DPF1 yes yes 2 0.00069793 43.628 By MS/MS 1 0.7323 0.78206 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7323 0.78206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1403500 770200 633290 0 0 0 0 0 0 1403500 770200 633290 0 0 0 0 0 0 0 0 0 3297 659 3437 17319 17855 17855 1 ATVLESEGTR KESMQMQVEAERRKRATVLESEGTRESAIN ERRKRATVLESEGTRESAINVAEGKKQAQI R A T T R E 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 10 0 1061.5353 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 202 211 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.00033827 106.6 By MS/MS By MS/MS 1 1 1.2356 1.1584 6.8068 2 Median 1.0965 1.1039 NaN 1 0 Median 1.3924 1.2155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9826100 4250700 5575400 2122500 1001500 1121000 7703600 3249200 4454400 0 0 0 0 0 0 0 0 0 0 0 0 3298 4304 3438 17320;17321 17856;17857;17858;17859 17859 4 ATVLLSMSK KGTVDCVQARAALDKATVLLSMSKGGKRKD RAALDKATVLLSMSKGGKRKDSVWGSGGGQ K A T S K G 1 0 0 0 0 0 0 0 0 0 2 1 1 0 0 2 1 0 0 1 0 0 9 0 948.5314 Q53EL6 Q53EL6 298 306 PDCD4 Programmed cell death protein 4 yes yes 2 0.00094209 89.355 By MS/MS By matching By matching By matching 1 1 1 1 1.133 1.0429 16.241 4 Median 0.91996 0.85053 NaN 1 0 Median 1.3622 1.1603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9423 0.93739 NaN 1 0 Median 1.4944 1.1847 NaN 1 0 Median 26349000 13016000 13332000 16951000 8916300 8034900 4435200 1869600 2565600 0 0 0 0 0 0 4399100 1984900 2414200 562900 245330 317580 3299 3026 3439 17322;17323;17324;17325 17860 17860 1 ATVLNLHQHLK LSLNQRKEDLLVDLKATVLNLHQHLKQEQE VDLKATVLNLHQHLKQEQEGVERDRLPAVT K A T L K Q 1 0 1 0 0 1 0 0 2 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1272.7303 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4062 4072 SYNE2 Nesprin-2 yes no 3 0.0003215 60.434 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.5193 1.3016 36.108 5 Median 0.68488 0.67752 NaN 1 0 Median 1.8337 1.5994 NaN 1 0 Median 0.90074 0.96514 NaN 1 0 Median 1.5931 1.5448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5193 1.3016 NaN 1 0 Median 21620000 9670900 11949000 1603000 1035200 567820 4808300 1876800 2931500 7887200 3831400 4055800 3081700 1240400 1841300 0 0 0 4239700 1687000 2552600 3300 3521 3440 17326;17327;17328;17329;17330 17861;17862;17863;17864;17865;17866;17867;17868 17863 7 ATVLNYLPK TMPYSVIRGEAFTLKATVLNYLPKCIRVSV EAFTLKATVLNYLPKCIRVSVQLEASPAFL K A T P K C 1 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 9 0 1017.5859 CON__ENSEMBL:ENSBTAP00000024146;P01023;P20742 CON__ENSEMBL:ENSBTAP00000024146 817 825 A2M;PZP Alpha-2-macroglobulin;Pregnancy zone protein yes no 2 0.035837 46.994 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3016500 3016500 0 3016500 3016500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3301 734 3441 17331 17869 17869 1 ATVLQQLGWMHHTVDLLGDK YEQLLQTENLSAQVKATVLQQLGWMHHTVD QLGWMHHTVDLLGDKATKESYAIQYLQKSL K A T D K A 1 0 0 2 0 2 0 2 2 0 4 1 1 0 0 0 2 1 0 2 0 0 20 0 2261.1627 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6 O15550 243 262 KDM6A Lysine-specific demethylase 6A yes no 3 0.016114 17.148 By MS/MS 1 1.0356 1.1174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0356 1.1174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2233300 1024700 1208600 0 0 0 0 0 0 2233300 1024700 1208600 0 0 0 0 0 0 0 0 0 3302 111 3442 17332 17870 17870 1 ATVLQTVFEDYVHSSER AQKSHAVGPQEIRERATVLQTVFEDYVHSS VLQTVFEDYVHSSERRVSWAKKALQSFIQA R A T E R R 1 1 0 1 0 1 2 0 1 0 1 0 0 1 0 2 2 0 1 3 0 0 17 0 1979.9589 F8WAJ0;Q9H8H2 F8WAJ0 585 601 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 3 0.057248 9.4055 By matching By MS/MS 1 1 1.0739 1.1422 0.93667 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0845 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0634 1.1347 NaN 1 0 Median NaN NaN NaN 0 0 Median 2170200 1066300 1103900 0 0 0 0 0 0 706440 337410 369030 0 0 0 1463800 728900 734880 0 0 0 3303 1092 3443 17333;17334 17871 17871 1 ATVLTTER LVGMTPEIIQKLQDKATVLTTERKKRGKTV IQKLQDKATVLTTERKKRGKTVPEELVKPE K A T E R K 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 3 0 0 1 0 0 8 0 889.4869 Q9UMS4;F5GY56;H0YGF3;F5H2I0 Q9UMS4 180 187 PRPF19 Pre-mRNA-processing factor 19 yes no 2 0.0035542 89.142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1.2702 1.1745 18.717 7 Median 1.2806 1.2723 11.316 2 0 Median 1.4229 1.1961 NaN 1 0 Median 0.97999 0.98318 7.7732 2 0 Median 1.2702 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.902 1.6368 NaN 1 1 Median 40119000 17914000 22205000 3351300 1592200 1759100 14840000 6585100 8255300 13494000 6575300 6919200 4221800 1773100 2448700 0 0 0 4210900 1388100 2822700 3304 4334 3444 17335;17336;17337;17338;17339;17340;17341;17342 17872;17873;17874;17875;17876;17877;17878;17879;17880;17881 17878 10 ATVMDVKPVDYR VRVKVETYNDESRIKATVMDVKPVDYREYG RIKATVMDVKPVDYREYGRRLVMSIRRSAL K A T Y R E 1 1 0 2 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 3 0 0 12 1 1392.7071 P27694;I3L4R8 P27694 589 600 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2;3 0.0002689 123.63 By MS/MS By MS/MS By MS/MS 1 1 3 0.91127 0.90672 16.221 5 Median 0.73377 0.7347 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.91127 0.96893 NaN 1 0 Median 0.96626 0.90672 17.734 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53787000 28234000 25553000 29498000 14929000 14569000 0 0 0 18190000 10298000 7891800 6099200 3007500 3091800 0 0 0 0 0 0 3305 2156 3445 17343;17344;17345;17346;17347 17882;17883;17884;17885 17883 4 ATVMLYDDGNKR ______________________________ SSRATVMLYDDGNKRWLPAGTGPQAFSRVQ R A T K R W 1 1 1 2 0 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 0 0 12 1 1381.666 P50552;K7ENR7;K7ENL7;K7EIG8 P50552 11 22 VASP Vasodilator-stimulated phosphoprotein yes no 2 0.0013515 81.338 By MS/MS By MS/MS By matching 1 1 1 1.0146 1.0271 79.292 3 Median 0.26451 0.26425 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0146 1.0271 NaN 1 0 Median 1.0974 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6802000 4487100 2314800 4169300 3157100 1012200 0 0 0 1570300 820970 749320 1062400 509120 553280 0 0 0 0 0 0 3306 2416 3446 17348;17349;17350 17886;17887 17886 1 ATVMVMVK SWPGLAVGNLFHRPRATVMVMVKGVNKLAL NLFHRPRATVMVMVKGVNKLALPPGSVISY R A T V K G 1 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 1 0 0 3 0 0 8 0 877.47653 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GTU8;A0A1B0GWJ8;H7C3E1;B7Z1I9;A0A1B0GV60;A0A1B0GWD6;A0A1B0GW13;H7C240;A0A1B0GV24 O75787 74 81 ATP6AP2 Renin receptor yes no 2 0.013171 53.554 By MS/MS 1 1.2433 1.0421 NaN 1 Median NaN NaN NaN 0 0 Median 1.2433 1.0421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4171100 1804800 2366300 0 0 0 4171100 1804800 2366300 0 0 0 0 0 0 0 0 0 0 0 0 3307 316 3447 17351 17888;17889 17889 2 ATVNLLGEEK KAKETADAITKEAKKATVNLLGEEKKST__ KEAKKATVNLLGEEKKST____________ K A T E K K 1 0 1 0 0 0 2 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1072.5764 Q00765 Q00765 177 186 REEP5 Receptor expression-enhancing protein 5 yes yes 2 0.00035409 89.047 By MS/MS By MS/MS 1 1 1.4745 1.3257 10.191 2 Median 1.5109 1.4247 NaN 1 0 Median 1.439 1.2335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23217000 9466100 13751000 16053000 6598000 9455000 7163700 2868000 4295700 0 0 0 0 0 0 0 0 0 0 0 0 3308 2678 3448 17352;17353 17890;17891;17892 17890 3 ATVNLLGEEKK KAKETADAITKEAKKATVNLLGEEKKST__ EAKKATVNLLGEEKKST_____________ K A T K K S 1 0 1 0 0 0 2 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1200.6714 Q00765 Q00765 177 187 REEP5 Receptor expression-enhancing protein 5 yes yes 2;3 0.0034156 53.683 By MS/MS By MS/MS 1 2 1.0971 0.97027 16.165 3 Plateau 1.0247 1.0277 NaN 1 1 Median 0.96984 0.85765 17.449 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14547000 6829500 7717300 3430300 1719900 1710400 11116000 5109500 6006900 0 0 0 0 0 0 0 0 0 0 0 0 3309 2678 3449 17354;17355;17356 17893;17894;17895 17894 3 ATVNTFGYIAK ELLELLKAHKKAIRRATVNTFGYIAKAIGP AIRRATVNTFGYIAKAIGPHDVLATLLNNL R A T A K A 2 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 2 0 1 1 0 0 11 0 1183.6237 O75533;H7C341 O75533 1076 1086 SF3B1 Splicing factor 3B subunit 1 yes no 2 0.00011299 138.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1.0666 1.0055 10.963 7 Median 1.0472 1.0181 NaN 1 0 Median 1.1831 1.0055 NaN 1 0 Median 1.028 1.0936 NaN 1 0 Median 1.0759 0.93307 NaN 1 0 Median 1.072 1.1058 15.23 2 0 Median 1.0666 0.87653 NaN 1 0 Median 142460000 68203000 74259000 6678500 2618900 4059600 5987200 2680300 3306900 37431000 17774000 19657000 6119800 2639500 3480300 82091000 40517000 41574000 4155400 1974200 2181200 3310 1683 3450 17357;17358;17359;17360;17361;17362;17363 17896;17897;17898;17899;17900;17901;17902;17903;17904;17905 17902 10 ATVQQLEGR ______________________________ ______________________________ M A T G R W 1 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 Q01469 Q01469 2 10 FABP5 Fatty acid-binding protein, epidermal yes yes 2 4.8294E-05 152.63 By MS/MS By MS/MS By matching By MS/MS 3 2 1 2 0.77722 0.6941 87.026 8 Median 1.1168 1.0818 126.93 3 0 Median 0.54499 0.45322 123.04 2 1 Median 0.97344 0.987 NaN 1 0 Median 0.45089 0.42779 18.656 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 142480000 67075000 75409000 60934000 29931000 31004000 70048000 31354000 38695000 7711700 3595900 4115800 3788700 2194000 1594700 0 0 0 0 0 0 3311 2685 3451 17364;17365;17366;17367;17368;17369;17370;17371 17906;17907;17908;17909;17910;17911;17912;17913;17914;17915 17912 10 ATVTAMIAR HHTKDFTRAAPNPAKATVTAMIARELLYGG APNPAKATVTAMIARELLYGGTSPTAETIL K A T A R E 3 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 9 0 932.51134 O95793;A0A087X1A5;Q5JW30 O95793 449 457 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 0.0040114 61.999 By matching By MS/MS 1 2 1.0821 0.98369 7.7848 3 Median 0.98834 0.98369 NaN 1 0 Median 1.155 0.98927 11 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12462000 5993800 6467900 3652900 1737700 1915200 8808800 4256000 4552800 0 0 0 0 0 0 0 0 0 0 0 0 3312 1794 3452 17372;17373;17374 17916;17917 17917 2 ATVTATTKVPEIR ______________________________ ______________________________ M A T I R D 2 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 4 0 0 2 0 0 13 1 1385.7878 Q9Y230;X6R2L4;M0R0Z0;M0QXZ7 Q9Y230 2 14 RUVBL2 RuvB-like 2 yes no 2 5.2081E-07 113.93 By MS/MS By matching By matching 1 1 1 1.1018 1.1874 10.327 3 Plateau 1.2295 1.2259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0163 1.0519 NaN 1 0 Median 1.1018 1.007 NaN 1 0 Median 15742000 7892600 7849800 10084000 5045800 5038400 0 0 0 0 0 0 0 0 0 4476000 2351100 2124900 1182300 495710 686560 3313 4368 3453 17375;17376;17377 17918 17918 1 ATVTPSPVK KPERKEKKMPKPRLKATVTPSPVKGKGKVG PKPRLKATVTPSPVKGKGKVGRPTASKASK K A T V K G 1 0 0 0 0 0 0 0 0 0 0 1 0 0 2 1 2 0 0 2 0 0 9 0 898.51238 Q9H1E3 Q9H1E3 176 184 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 2 0.0074886 51.346 By matching By MS/MS By matching By MS/MS 2 2 1 1 0.71608 0.69234 22.925 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59878 0.61882 11.511 2 0 Median 0.93914 0.79684 11.864 2 0 Median 0.45411 0.44773 NaN 1 0 Median 0.85262 0.71404 NaN 1 0 Median 10229000 6083000 4146000 0 0 0 0 0 0 5364300 3353500 2010800 2595200 1365400 1229900 1004500 697950 306590 1264900 666240 598660 3314 3935 3454 17378;17379;17380;17381;17382;17383 17919;17920 17920 2 ATVVVEATEPEPSGSIANPAASTSPSLSHR ______________________________ IANPAASTSPSLSHRFLDSKFYLLVVVGEI M A T H R F 5 1 1 0 0 0 3 1 1 1 1 0 0 0 4 6 3 0 0 3 0 0 30 0 2961.468 P46821;D6RA32;D6RGJ3;D6RCL2 P46821 2 31 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 2.3095E-29 80.984 By MS/MS By MS/MS 2 2 0.44134 0.45752 27.577 4 Median 0.36228 0.35615 32.605 2 0 Median NaN NaN NaN 0 0 Median 0.45555 0.49855 9.334 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26732000 17114000 9617600 14111000 8636900 5474500 0 0 0 12621000 8477400 4143100 0 0 0 0 0 0 0 0 0 3315 2347 3455 17384;17385;17386;17387 17921;17922;17923;17924 17921 4 ATWLHQALR TADSTLCHILNLYRRATWLHQALREGTRVQ LNLYRRATWLHQALREGTRVQSVEQIREVA R A T L R E 2 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 9 0 1094.5985 Q13363;D6RAX2;E7ESU7;E7EPF8;E9PGB1 Q13363 143 151 CTBP1 C-terminal-binding protein 1 yes no 2 0.00064678 107.29 By matching By MS/MS By MS/MS 3 2 2 1.1827 1.0304 20.067 7 Median NaN NaN NaN 0 0 Median 1.2082 1.0464 30.52 3 0 Median 0.94655 0.97842 7.316 2 0 Median 1.2659 1.0925 9.31 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36287000 15439000 20848000 0 0 0 5502400 1632800 3869600 16952000 8102100 8850200 13832000 5704200 8128100 0 0 0 0 0 0 3316 2808 3456 17388;17389;17390;17391;17392;17393;17394 17925;17926;17927;17928 17927 4 ATYDGNHDTFR ACSFTTVWLIYSKFKATYDGNHDTFRVEFL SKFKATYDGNHDTFRVEFLVVPTAILAFLV K A T F R V 1 1 1 2 0 0 0 1 1 0 0 0 0 1 0 0 2 0 1 0 0 0 11 0 1295.5531 P24390;M0R1Y2;P33947 P24390 84 94 KDELR1;KDELR2 ER lumen protein-retaining receptor 1;ER lumen protein-retaining receptor;ER lumen protein-retaining receptor 2 yes no 2;3 4.7769E-05 92.866 By MS/MS By MS/MS 1 2 1.0809 0.90142 19.479 3 Median 1.1859 1.1854 NaN 1 0 Median 1.0165 0.85617 7.2839 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10313000 4959200 5353700 1038100 421470 616650 9274800 4537800 4737100 0 0 0 0 0 0 0 0 0 0 0 0 3317 2122 3457 17395;17396;17397 17929;17930;17931;17932;17933 17931 5 ATYLEFIQQNEER ______________________________ ______________________________ M A T E R D 1 1 1 0 0 2 3 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 13 0 1639.7842 A0A2R8YFH5;Q15437;Q5QPE2;A0A2R8YF30;A0A2R8Y633;A0A2R8Y7S7 A0A2R8YFH5 2 14 SEC23B Protein transport protein Sec23B yes no 2 0.0015356 52.79 By MS/MS By matching By matching By matching 1 1 1 1 1.1216 1.0364 12.028 4 Median 1.2037 1.1909 NaN 1 0 Median 1.0289 0.93972 NaN 1 0 Median 1.0958 1.1298 NaN 1 0 Median 1.1481 0.9506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3163100 1477100 1686000 1967900 889590 1078300 521180 249660 271510 521050 267780 253270 152990 70030 82961 0 0 0 0 0 0 3318 401 3458 17398;17399;17400;17401 17934 17934 1 ATYLPQLTTEK LINTLIRKHGTEEQKATYLPQLTTEKVGSF EEQKATYLPQLTTEKVGSFCLSEAGAGSDS K A T E K V 1 0 0 0 0 1 1 0 0 0 2 1 0 0 1 0 3 0 1 0 0 0 11 0 1263.6711 P45954 P45954 160 170 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.00021918 74.162 By MS/MS By MS/MS 1 1 0.96433 0.85603 13.849 2 Median 0.83964 0.77618 NaN 1 0 Median 1.1075 0.9441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24291000 10942000 13348000 15445000 8163600 7281800 8845400 2778600 6066700 0 0 0 0 0 0 0 0 0 0 0 0 3319 2330 3459 17402;17403 17935;17936;17937;17938 17938 4 ATYSLANER ______________________________ ______________________________ M A T E R L 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 9 0 1023.4985 Q9P086;I3L3E8;I3L2Q0 Q9P086 2 10 MED11 Mediator of RNA polymerase II transcription subunit 11 yes no 2 0.0015982 80.165 By MS/MS By MS/MS By MS/MS 2 1 1 1.1526 1.1012 14.465 4 Median 1.2153 1.1831 2.0169 2 2 Median NaN NaN NaN 0 0 Median 1.0257 1.0396 NaN 1 0 Median 1.1089 0.87259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25074000 11444000 13630000 13282000 5649000 7632700 0 0 0 8915600 4457400 4458200 2876400 1337100 1539300 0 0 0 0 0 0 3320 4201 3460 17404;17405;17406;17407 17939;17940;17941;17942 17941 4 AVAALLTIPEAEK QEFEKQDELKRSAMRAVAALLTIPEAEKSP MRAVAALLTIPEAEKSPLMSEFQSQISSNP R A V E K S 4 0 0 0 0 0 2 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1324.7602 Q86VP6;A0A0C4DGH5 Q86VP6 1179 1191 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 5.1709E-07 107.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1 0.9266 0.83931 37.15 8 Median 0.80355 0.77711 NaN 1 0 Median 1.0597 0.9172 4.614 2 0 Median 0.82938 0.87589 16.147 2 0 Median 0.91424 0.7935 NaN 1 0 Median 2.2246 2.2836 NaN 1 0 Median 0.82331 0.71562 NaN 1 0 Median 48193000 24942000 23251000 12544000 7088600 5455800 9507200 4412600 5094500 18384000 9894400 8489500 6398400 3183300 3215200 1257100 307060 950010 101670 55711 45956 3321 3288 3461 17408;17409;17410;17411;17412;17413;17414;17415 17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953 17943 11 AVADQVYGDQDMHEVVR FIIKQMKEDGACLFRAVADQVYGDQDMHEV ADQVYGDQDMHEVVRKHCMDYLMKNADYFS R A V V R K 2 1 0 3 0 2 1 1 1 0 0 0 1 0 0 0 0 0 1 4 0 0 17 0 1930.8843 H7BZQ3;A0A087WXV6;Q96G74 H7BZQ3 101 117 OTUD5 OTU domain-containing protein 5 yes no 3 2.9206E-05 58.83 By MS/MS 1 1.4626 1.4102 NaN 1 Median 1.4626 1.4102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6421000 2562500 3858500 6421000 2562500 3858500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3322 73 3462 17416 17954 17954 1 AVADTGSEDQGPGTGELTAVHK QVKQWFAEKMGEETRAVADTGSEDQGPGTG EDQGPGTGELTAVHKGMGDTYSEVSENSES R A V H K G 3 0 0 2 0 1 2 4 1 0 1 1 0 0 1 1 3 0 0 2 0 0 22 0 2139.008 H0Y6F5;Q9H4I2 H0Y6F5 602 623 ZHX3 Zinc fingers and homeoboxes protein 3 yes no 3 0.0015462 34.914 By MS/MS By MS/MS 1 1 0.85052 0.82125 16.847 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85334 0.92515 NaN 1 1 Median 0.8477 0.72902 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8757700 4638900 4118800 0 0 0 0 0 0 5015100 2594500 2420700 3742600 2044400 1698200 0 0 0 0 0 0 3323 1154 3463 17417;17418 17955;17956 17955 2 AVAEELAK SEWQKGAYLKDKMRKAVAEELAK_______ LKDKMRKAVAEELAK_______________ K A V A K - 3 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 Q969Z0 Q969Z0 624 631 TBRG4 Protein TBRG4 yes yes 2 0.01208 55.676 By MS/MS By MS/MS 1 2 0.92767 0.89836 46.767 3 Median 0.92767 0.89836 NaN 1 0 Median 0.93786 0.83792 65.893 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9426000 4430200 4995700 1255000 760140 494880 8170900 3670100 4500800 0 0 0 0 0 0 0 0 0 0 0 0 3324 3591 3464 17419;17420;17421 17957;17958 17958 2 AVAENQPFLIEAMTYR DVFAVYNATKEARRRAVAENQPFLIEAMTY VAENQPFLIEAMTYRIGHHSTSDDSSAYRS R A V Y R I 3 1 1 0 0 1 2 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 16 0 1851.9189 F5H5P2;P12694;F5GXU9 F5H5P2 351 366 BCKDHA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 2 0.039841 23.376 By MS/MS By matching By matching By matching 2 1 1 1 0.96957 0.95376 21.01 5 Median 0.63892 0.68672 5.9818 2 0 Median 1.1751 1.0494 NaN 1 0 Median 0.96957 0.95376 NaN 1 0 Median 1.1332 0.99545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590200 2486100 2104000 3280200 1872200 1408100 299190 116360 182830 920450 450300 470140 90285 47285 43000 0 0 0 0 0 0 3325 1037 3465 17422;17423;17424;17425;17426 17959 17959 1 AVAEQIPLLVQGVR KASAGPQPLLVQSCKAVAEQIPLLVQGVRG KAVAEQIPLLVQGVRGSQAQPDSPSAQLAL K A V V R G 2 1 0 0 0 2 1 1 0 1 2 0 0 0 1 0 0 0 0 3 0 0 14 0 1491.8773 Q9Y490 Q9Y490 958 971 TLN1 Talin-1 yes yes 2;3 1.895E-08 155.06 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 3 1.0339 0.93479 43.817 10 Median 0.87717 0.84319 5.2258 2 0 Median 1.0339 0.88499 5.9482 4 0 Median 1.0087 1.1166 10.87 2 0 Median NaN NaN NaN 0 0 Median 2.3793 2.4689 28.561 2 1 Median NaN NaN NaN 0 0 Median 47518000 23339000 24179000 24945000 12985000 11960000 11804000 6055200 5748600 7100200 3301300 3798800 0 0 0 3669500 997790 2671700 0 0 0 3326 4441 3466 17427;17428;17429;17430;17431;17432;17433;17434;17435;17436;17437 17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971;17972;17973;17974;17975;17976;17977 17963 18 AVAFFLESIAMHDIIAAEK ALQVLGTEAQSSLLKAVAFFLESIAMHDII FLESIAMHDIIAAEKCFGTGAAGNRTSPQE K A V E K C 5 0 0 1 0 0 2 0 1 3 1 1 1 2 0 1 0 0 0 1 0 0 19 0 2075.0761 P78527 P78527 1293 1311 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0008484 27.324 By MS/MS 2 1.9289 1.6921 46.834 2 Median NaN NaN NaN 0 0 Median 1.9289 1.6921 46.834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7331600 2796100 4535500 0 0 0 7331600 2796100 4535500 0 0 0 0 0 0 0 0 0 0 0 0 3327 2647 3467 17438;17439 17978 17978 1 AVAFHPR TKPYRMLRHHKKALRAVAFHPRYPLFASGS RHHKKALRAVAFHPRYPLFASGSDDGSVIV R A V P R Y 2 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 7 0 796.43441 Q14137 Q14137 668 674 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.04254 56.51 By MS/MS 1 0.32407 0.34394 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32407 0.34394 NaN 1 1 Median NaN NaN NaN 0 0 Median 727380 186420 540960 0 0 0 0 0 0 0 0 0 0 0 0 727380 186420 540960 0 0 0 3328 2856 3468 17440 17979 17979 1 AVAFMDQVR LAAAGLHAAPMAAERAVAFMDQVRAFQEQV PMAAERAVAFMDQVRAFQEQVDKLGRLQVD R A V V R A 2 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1035.5172 P10588 P10588 275 283 NR2F6 Nuclear receptor subfamily 2 group F member 6 yes yes 2 0.00058288 112.17 By MS/MS By MS/MS 1 1 1.2326 1.2111 9.447 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0391 1.1328 NaN 1 0 Median 1.4622 1.2947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12035000 5786300 6248400 0 0 0 0 0 0 11171000 5456700 5713900 864090 329620 534470 0 0 0 0 0 0 3329 1940 3469 17441;17442 17980;17981;17982 17980 3 AVAFQNPQTHVIENLHAAAYR RWEVADLQPQLKIDKAVAFQNPQTHVIENL PQTHVIENLHAAAYRNALANPLYCPDYRIG K A V Y R N 5 1 2 0 0 2 1 0 2 1 1 0 0 1 1 0 1 0 1 2 0 0 21 0 2349.1978 P22695;H3BRG4;H3BSJ9;H3BP04 P22695 163 183 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 3;4 2.6462E-12 76.539 By MS/MS By matching By MS/MS By MS/MS 5 2 2 1 0.91217 0.85573 15.359 10 Median 0.88483 0.83324 10.132 5 2 Median 1.2763 1.1181 10.291 2 0 Median 0.75282 0.77693 2.1625 2 0 Median 1.0895 0.9381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207080000 101530000 105550000 169850000 83575000 86279000 2127900 767120 1360800 20541000 10409000 10132000 14554000 6776600 7777600 0 0 0 0 0 0 3330 2105 3470 17443;17444;17445;17446;17447;17448;17449;17450;17451;17452 17983;17984;17985;17986;17987;17988;17989;17990;17991;17992;17993;17994;17995;17996 17984 14 AVAFSPVTELKK ANAPDSACVIGLKKKAVAFSPVTELKKDTD KKKAVAFSPVTELKKDTDFEHRMPREQWWL K A V K K D 2 0 0 0 0 0 1 0 0 0 1 2 0 1 1 1 1 0 0 2 0 0 12 1 1288.7391 P17858 P17858 716 727 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 3 0.0010192 43.991 By MS/MS 2 0.41751 0.4423 89.091 2 Median 0.41751 0.4423 89.091 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26164000 20907000 5256800 26164000 20907000 5256800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3331 2047 3471 17453;17454 17997;17998;17999 17999 3 AVAGDASESALLK AVFQANQENLPILKRAVAGDASESALLKCI KRAVAGDASESALLKCIELCCGSVKEMRER R A V L K C 4 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1230.6456 P05023 P05023 446 458 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 5.9879E-07 121.83 By MS/MS By MS/MS By matching 3 5 1 1.1375 1.0274 34.031 9 Median 1.1463 1.0727 40.304 3 1 Median 1.1102 0.9607 26.196 5 2 Median NaN NaN NaN 0 0 Median 1.4456 1.255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201270000 82169000 119100000 70756000 26927000 43829000 128880000 54545000 74335000 0 0 0 1629600 697310 932270 0 0 0 0 0 0 3332 1857 3472 17455;17456;17457;17458;17459;17460;17461;17462;17463 18000;18001;18002;18003;18004;18005;18006;18007;18008;18009 18003 10 AVAGNISDPGLQK DELSKTISPMVMDAKAVAGNISDPGLQKSF AKAVAGNISDPGLQKSFLDSGYRILGAVAK K A V Q K S 2 0 1 1 0 1 0 2 0 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1268.6725 P18206 P18206 803 815 VCL Vinculin yes yes 2 7.5314E-07 103.26 By MS/MS By MS/MS By MS/MS 2 2 1 0.93605 0.83378 20.529 5 Median 1.0025 0.97604 22.278 2 0 Median 0.94766 0.81366 5.3629 2 0 Median NaN NaN NaN 0 0 Median 0.75403 0.64581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98478000 51404000 47074000 20103000 10335000 9767500 75431000 39379000 36052000 0 0 0 2944300 1689900 1254400 0 0 0 0 0 0 3333 2057 3473 17464;17465;17466;17467;17468 18010;18011;18012;18013;18014;18015;18016;18017;18018 18014 9 AVAGWEEVLR LLSHDSGSDHLAFVRAVAGWEEVLRWQDRS LAFVRAVAGWEEVLRWQDRSSRENYLEENL R A V L R W 2 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 10 0 1128.5928 H7BXY3;Q7L2E3 H7BXY3 914 923 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0034408 56.729 By MS/MS By MS/MS By matching 1 1 3 0.79679 0.78726 87.259 5 Median 3.8125 3.6744 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.77325 0.84752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79679 0.65286 43.955 3 0 Median 13379000 4090500 9288900 9747200 1937300 7810000 0 0 0 2484000 1519200 964830 0 0 0 0 0 0 1148100 634000 514120 3334 1244 3474 17469;17470;17471;17472;17473 18019;18020 18020 2 AVAHHTDCTFIR LLYGPPGTGKTLLARAVAHHTDCTFIRVSG LARAVAHHTDCTFIRVSGSELVQKFIGEGA R A V I R V 2 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 2 0 0 1 0 0 12 0 1426.6776 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRW1;J3QRR3 P62195 202 213 PSMC5 26S protease regulatory subunit 8 yes no 3 0.00073512 47.991 By MS/MS 2 1.5099 1.2981 28.193 2 Median NaN NaN NaN 0 0 Median 1.5099 1.2981 28.193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3306600 1545100 1761500 0 0 0 3306600 1545100 1761500 0 0 0 0 0 0 0 0 0 0 0 0 3335 2572 3475 17474;17475 18021;18022;18023 18023 3 AVAHHTTAAFIR LMYGPPGCGKTMLAKAVAHHTTAAFIRVVG LAKAVAHHTTAAFIRVVGSEFVQKYLGEGP K A V I R V 4 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 0 0 1 0 0 12 0 1293.6942 P43686 P43686 218 229 PSMC4 26S protease regulatory subunit 6B yes yes 2;3 0.00011944 78.653 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 1 1 2 1.2159 1.0732 18.667 14 Median 1.0367 1.0005 32.461 4 1 Median 1.2317 1.0499 5.5 6 0 Median 1.2021 1.2121 NaN 1 0 Median 1.2757 1.1108 NaN 1 0 Median 1.1781 1.1692 30.448 2 0 Median NaN NaN NaN 0 0 Median 47798000 21549000 26249000 17069000 8084900 8983800 25374000 11129000 14245000 2705700 1162900 1542800 1687300 679190 1008100 962580 493490 469090 0 0 0 3336 2327 3476 17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489 18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041 18035 18 AVAIDLPGLGHSK QNLGTLHRLAQAGYRAVAIDLPGLGHSKEA YRAVAIDLPGLGHSKEAAAPAPIGELAPGS R A V S K E 2 0 0 1 0 0 0 2 1 1 2 1 0 0 1 1 0 0 0 1 0 0 13 0 1276.7139 Q96IU4;B4DQI4 Q96IU4 64 76 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 2;3 0.00021838 64.827 By MS/MS By matching 2 1 0.95107 0.88672 17.059 3 Median 0.93361 0.87094 2.5391 2 0 Median 1.3674 1.1684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22838000 12463000 10375000 21698000 11882000 9816600 1139600 580860 558790 0 0 0 0 0 0 0 0 0 0 0 0 3337 3679 3477 17490;17491;17492 18042;18043;18044 18042 3 AVAILCNHQR ENIPAKILSYNRANRAVAILCNHQRAPPKT NRANRAVAILCNHQRAPPKTFEKSMMNLQT R A V Q R A 2 1 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1180.6135 P11387 P11387 625 634 TOP1 DNA topoisomerase 1 yes yes 2 0.00041811 88.942 By MS/MS By matching 1 1 0.98879 0.89648 0.86641 2 Median NaN NaN NaN 0 0 Median 1.0119 0.89101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96623 0.90199 NaN 1 0 Median 4651900 2048600 2603200 0 0 0 1415400 603280 812140 0 0 0 0 0 0 0 0 0 3236400 1445400 1791100 3338 1962 3478 17493;17494 18045 18045 1 AVAISLPK TKEQLKIWMGKMQKKAVAISLPKGVVEVTH MGKMQKKAVAISLPKGVVEVTHDLQKHLAG K A V P K G 2 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 8 0 797.50109 P50454;E9PPV6;E9PKH2 P50454 301 308 SERPINH1 Serpin H1 yes no 2 0.055228 50.127 By MS/MS 1 1.4252 1.3855 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4252 1.3855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8635200 1902200 6733100 0 0 0 0 0 0 8635200 1902200 6733100 0 0 0 0 0 0 0 0 0 3339 2414 3479 17495 18046 18046 1 AVALDTYEK YVTMEEYFMRETVNKAVALDTYEKGQLTSS RETVNKAVALDTYEKGQLTSSMVDDVFYIV K A V E K G 2 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 1008.5128 A0A0A0MS45;J3KNI1;Q9H9E3 A0A0A0MS45 439 447 COG4 Conserved oligomeric Golgi complex subunit 4 yes no 2 0.011663 47.082 By MS/MS 1 0.65384 0.65601 NaN 1 Median 0.65384 0.65601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1386600 790420 596200 1386600 790420 596200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3340 175 3480 17496 18047 18047 1 AVALYFIDK YREDWKSKEMKVRQRAVALYFIDKLALRAG MKVRQRAVALYFIDKLALRAGNEKEEGETA R A V D K L 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1038.575 P11387;Q969P6;E5RIC7 P11387 476 484 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0049967 58.981 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 7 2 4 1.3735 1.2636 24.731 22 Median 1.6212 1.5991 64.314 2 0 Median 2.8231 2.4373 NaN 1 0 Median 1.111 1.1521 12.088 6 0 Median 1.4792 1.2515 17.392 7 0 Median 1.2755 1.2592 5.1347 2 0 Median 1.5313 1.2983 7.4815 4 0 Median 170610000 77413000 93196000 2881200 1311600 1569600 1395800 155340 1240400 115170000 54268000 60905000 25668000 10347000 15321000 18700000 8673600 10026000 6791200 2657100 4134100 3341 1962 3481 17497;17498;17499;17500;17501;17502;17503;17504;17505;17506;17507;17508;17509;17510;17511;17512;17513;17514;17515;17516;17517;17518 18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059 18049 12 AVAMLWK AGLCYFNYHDVGICKAVAMLWKL_______ YHDVGICKAVAMLWKL______________ K A V W K L 2 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 0 0 7 0 817.45203 O14521 O14521 152 158 SDHD Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial yes yes 2 0.01617 69.39 By matching By MS/MS By matching 1 1 1 1.1458 1.1645 18.341 3 Median 1.0796 0.98254 NaN 1 0 Median 1.7247 1.4175 NaN 1 0 Median 1.1458 1.1645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16510000 7265500 9244800 11118000 5240000 5878500 4484000 1636000 2848000 907830 389480 518350 0 0 0 0 0 0 0 0 0 3342 1481 3482 17519;17520;17521 18060;18061 18061 2 AVANESGLNFISVK LLAGPPGCGKTLLAKAVANESGLNFISVKG KAVANESGLNFISVKGPELLNMYVGESERA K A V V K G 2 0 2 0 0 0 1 1 0 1 1 1 0 1 0 2 0 0 0 2 0 0 14 0 1447.7671 O15381 O15381 634 647 NVL Nuclear valosin-containing protein-like yes yes 2 0.00066409 69.01 By MS/MS 1 1.0453 1.0732 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0453 1.0732 NaN 1 1 Median NaN NaN NaN 0 0 Median 7312400 3363300 3949100 0 0 0 0 0 0 0 0 0 0 0 0 7312400 3363300 3949100 0 0 0 3343 1542 3483 17522 18062 18062 1 AVANQTSATFLR ILYGPPGTGKTLLAKAVANQTSATFLRVVG LAKAVANQTSATFLRVVGSELIQKYLGDGP K A V L R V 3 1 1 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1277.6728 P62191 P62191 238 249 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.00019063 152.28 By MS/MS By MS/MS 1 2 1.2164 1.0959 6.962 3 Median 1.1711 1.0959 NaN 1 0 Median 1.2929 1.0961 9.8457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58123000 25409000 32714000 41075000 17852000 23223000 17048000 7557300 9490700 0 0 0 0 0 0 0 0 0 0 0 0 3344 2571 3484 17523;17524;17525 18063;18064;18065;18066 18063 4 AVANYDSVEEGEK AADKVVEEIRRRGGKAVANYDSVEEGEKVV GKAVANYDSVEEGEKVVKTALDAFGRIDVV K A V E K V 2 0 1 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 1 2 0 0 13 0 1409.6311 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 69 81 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 3.8547E-07 152.62 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.0375 0.99122 22.45 9 Median 1.0161 0.95702 2.598 2 0 Median 1.386 1.1892 13.679 2 0 Median 0.94249 0.92474 9.817 2 0 Median 1.3802 1.1762 4.7335 2 0 Median NaN NaN NaN 0 0 Median 0.71442 0.61045 NaN 1 0 Median 66142000 28812000 37331000 11217000 5144500 6072400 12197000 4850400 7346700 26882000 12448000 14434000 15366000 6109000 9256900 0 0 0 480640 260190 220450 3345 393 3485 17526;17527;17528;17529;17530;17531;17532;17533;17534 18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080;18081;18082 18072 16 AVANYDSVEEGEKVVK AADKVVEEIRRRGGKAVANYDSVEEGEKVV VANYDSVEEGEKVVKTALDAFGRIDVVVNN K A V V K T 2 0 1 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 1 4 0 0 16 1 1735.8628 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 69 84 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 0.0027487 28.58 By MS/MS By matching 1 1 1.0218 0.97202 7.0221 2 Median 0.99122 1.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0534 0.92493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6135600 3363400 2772200 5351500 2973700 2377800 0 0 0 0 0 0 784140 389760 394380 0 0 0 0 0 0 3346 393 3486 17535;17536 18083 18083 1 AVAQAGTVGTLLIVK VFTSPAVGSILAAIRAVAQAGTVGTLLIVK AVAQAGTVGTLLIVKNYTGDRLNFGLAREQ R A V V K N 3 0 0 0 0 1 0 2 0 1 2 1 0 0 0 0 2 0 0 3 0 0 15 0 1439.8712 Q3LXA3;H0YCY6;E9PJG8 Q3LXA3 95 109 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.0066435 33.89 By MS/MS By matching 1 1 1.219 1.1367 31.867 2 Median 0.94229 0.90739 NaN 1 0 Median 1.5771 1.424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3096000 1560200 1535800 2781700 1447400 1334200 314400 112770 201630 0 0 0 0 0 0 0 0 0 0 0 0 3347 3012 3487 17537;17538 18084 18084 1 AVAQALEVIPR EKSKAMTGVEQWPYRAVAQALEVIPRTLIQ WPYRAVAQALEVIPRTLIQNCGASTIRLLT R A V P R T 3 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 11 0 1165.6819 P49368;B4DUR8 P49368 439 449 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00011372 128.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 7 1 1 2 3 1.023 0.94461 29.491 20 Median 0.95896 0.91384 32.486 6 0 Median 1.0519 0.8933 24.979 7 0 Median 0.99492 0.98431 NaN 1 0 Median 1.0814 0.90606 NaN 1 0 Median 1.4009 1.4554 3.331 2 0 Median 1.1186 0.94241 31.975 3 0 Median 260620000 126670000 133960000 149710000 73032000 76678000 64104000 30848000 33256000 31936000 15961000 15975000 4903600 2415100 2488500 8972900 3910500 5062400 997300 501440 495860 3348 2379 3488 17539;17540;17541;17542;17543;17544;17545;17546;17547;17548;17549;17550;17551;17552;17553;17554;17555;17556;17557;17558 18085;18086;18087;18088;18089;18090;18091;18092;18093;18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105;18106 18095 22 AVAREESGKPGAHVTVK ARPHSIDGRVVEPKRAVAREESGKPGAHVT AREESGKPGAHVTVKKLFVGGIKEDTEEHH R A V V K K 3 1 0 0 0 0 2 2 1 0 0 2 0 0 1 1 1 0 0 3 0 0 17 2 1734.9377 P22626;A0A087WUI2 P22626 96 112 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 0.0094831 24.043 By matching By MS/MS By matching 1 2 1 0.98109 1.0594 52.138 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76786 0.7681 NaN 1 0 Median 1.4969 1.756 26.001 2 0 Median 0.76669 0.71417 NaN 1 0 Median 7188600 3167700 4020800 0 0 0 0 0 0 0 0 0 42285 14917 27368 7032100 3084700 3947400 114190 68134 46055 3349 2103 3489 17559;17560;17561;17562 18107 18107 1 AVASAAAALVLK DTDPHFQDALMQLAKAVASAAAALVLKAKS LAKAVASAAAALVLKAKSVAQRTEDSGLQT K A V L K A 6 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 12 0 1083.6652 Q9Y490 Q9Y490 674 685 TLN1 Talin-1 yes yes 2 0.00030237 82.645 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 3 1.2284 1.045 40.422 10 Median 0.79937 0.78459 23.38 2 0 Median 1.03 0.92754 22.515 2 0 Median 1.3341 1.481 NaN 1 0 Median 1.2527 1.1411 NaN 1 0 Median 2.7928 2.924 NaN 1 0 Median 1.2291 1.016 6.9915 3 0 Median 76989000 34550000 42439000 45410000 22078000 23332000 13525000 6128300 7396500 7368700 2971400 4397300 1074000 481190 592790 6446400 1481500 4964900 3165000 1409600 1755400 3350 4441 3490 17563;17564;17565;17566;17567;17568;17569;17570;17571;17572 18108;18109;18110;18111;18112;18113;18114;18115 18108 8 AVASDFYLR ______________________________ ______________________________ M A V L R Y 2 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1040.5291 Q96A72;F5H6N1;F5H124 Q96A72 2 10 MAGOHB Protein mago nashi homolog 2 yes no 2 0.00074835 101.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 3 1 0.68444 0.69242 89.31 10 Median 0.94839 0.91953 74.284 3 0 Plateau 0.084687 0.068497 NaN 1 0 Median 0.93614 0.94709 NaN 1 0 Median 1.0666 0.83754 NaN 1 0 Median 0.50042 0.57244 50.671 3 0 Median 1.4877 1.1409 NaN 1 0 Median 57170000 31155000 26015000 15043000 8010200 7032400 3722600 3384200 338430 18802000 9315100 9487200 6840600 3086900 3753700 12077000 7070100 5006700 685670 288680 396990 3351 3596 3491 17573;17574;17575;17576;17577;17578;17579;17580;17581;17582 18116;18117;18118;18119;18120;18121;18122 18117 7 AVASLPPEQMFELMK GDPIDPEDAPESITRAVASLPPEQMFELMK AVASLPPEQMFELMKQMKLCVQNSHQEARN R A V M K Q 2 0 0 0 0 1 2 0 0 0 2 1 2 1 2 1 0 0 0 1 0 0 15 0 1689.847 P33240;E7EWR4;E9PID8;A0A0A0MT56;Q9H0L4 Q9H0L4 131 145 CSTF2;CSTF2T Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant no no 2 4.2688E-10 108.7 By MS/MS By matching By matching 1 4 1 0.97209 0.82077 9.8048 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69309 0.69286 NaN 1 0 Median 1.0073 0.86266 5.2904 4 0 Median 0.77829 0.77346 NaN 1 0 Median NaN NaN NaN 0 0 Median 23581000 13360000 10221000 0 0 0 0 0 0 21611000 12377000 9234300 1493700 750450 743270 476510 233110 243390 0 0 0 3352 2222;3927 3492 17583;17584;17585;17586;17587;17588 18123;18124;18125;18126;18127;18128;18129;18130 18126 8 AVASQPDSVDAAER WLTCFEEALDGVVKRAVASQPDSVDAAERA RAVASQPDSVDAAERAEKFRQKYWNKLQTL R A V E R A 4 1 0 2 0 1 1 0 0 0 0 0 0 0 1 2 0 0 0 2 0 0 14 0 1414.6688 E9PHT6;A0A494C169;Q9NVE7;H0YA26 E9PHT6 424 437 PANK4 Pantothenate kinase 4 yes no 2 0.00037473 72.006 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.71731 0.71374 21.966 4 Median 0.98088 0.96205 NaN 1 0 Median 0.66034 0.58045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71625 0.77829 NaN 1 0 Median 0.71838 0.65454 NaN 1 0 Median 12032000 6700000 5331900 2561100 1329800 1231300 1481000 827240 653780 0 0 0 0 0 0 7241100 4171800 3069300 748640 371140 377500 3353 466 3493 17589;17590;17591;17592 18131;18132;18133;18134 18133 4 AVATWHANTER EYHRSVAGKIQKLSKAVATWHANTEREQKK KLSKAVATWHANTEREQKKETERIEKERMR K A V E R E 3 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 0 11 0 1254.6105 P51531;F6VDE0;A0A0U1RQZ9 P51531 479 489 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 0.019364 38.021 By MS/MS 1 0.77875 0.86426 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77875 0.86426 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1940000 928010 1012000 0 0 0 0 0 0 1940000 928010 1012000 0 0 0 0 0 0 0 0 0 3354 2433 3494 17593 18135 18135 1 AVATYHANTER EYHRSVTGKIQKLTKAVATYHANTEREQKK KLTKAVATYHANTEREQKKENERIEKERMR K A V E R E 3 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 1 1 0 0 11 0 1231.5945 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8YGP5 P51532 503 513 SMARCA4 Transcription activator BRG1 yes no 2;3 0.008153 41.029 By MS/MS By matching By matching 4 1 1 1.0379 1.1212 20.797 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0071 1.1082 24.834 4 0 Median NaN NaN NaN 0 0 Median 1.0987 1.1721 NaN 1 0 Median 1.37 1.1272 NaN 1 0 Median 2911800 1355700 1556200 0 0 0 0 0 0 2322100 1113800 1208300 0 0 0 300410 111540 188880 289310 130370 158940 3355 366 3495 17594;17595;17596;17597;17598;17599 18136;18137;18138;18139 18138 4 AVAVDLGNR TQLQVRALWSSAGSRAVAVDLGNRKLEISS SSAGSRAVAVDLGNRKLEISSGKLARFADG R A V N R K 2 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 9 0 913.49813 Q8TCS8;H7BXF6;F8WBI3 Q8TCS8 46 54 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes no 2 0.0016842 89.55 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.4239 1.3116 16.716 4 Median 1.3456 1.3251 NaN 1 1 Median 1.9866 1.7215 NaN 1 1 Median 1.0886 1.1595 NaN 1 0 Median 1.5068 1.2982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10481000 4401800 6079600 2291900 971520 1320400 3410000 1213700 2196300 2862000 1421500 1440500 1917600 795040 1122500 0 0 0 0 0 0 3356 3467 3496 17600;17601;17602;17603 18140;18141;18142;18143 18140 4 AVAVDSTGTYMATSGLDHQLK KEPLAKILCHRGGVRAVAVDSTGTYMATSG TGTYMATSGLDHQLKIFDLRGTYQPLSTRT R A V L K I 3 0 0 2 0 1 0 2 1 0 2 1 1 0 0 2 3 0 1 2 0 0 21 0 2164.047 O15213;H0Y6G3 O15213 364 384 WDR46 WD repeat-containing protein 46 no no 3 4.7682E-14 86.44 By MS/MS 2 1.2575 1.2387 7.0161 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2575 1.2387 7.0161 2 0 Median NaN NaN NaN 0 0 Median 21619000 9424600 12194000 0 0 0 0 0 0 0 0 0 0 0 0 21619000 9424600 12194000 0 0 0 3357 1531 3497 17604;17605 18144;18145;18146 18144 3 AVAVESIHR LLVKFLDADKPQWLRAVAVESIHRFCVQPQ KPQWLRAVAVESIHRFCVQPQLLRSFCQSY R A V H R F 2 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 2 0 0 9 0 980.54033 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 353 361 MON2 Protein MON2 homolog yes no 2 0.0545 43.808 By MS/MS 1 0.97617 0.83815 NaN 1 Median NaN NaN NaN 0 0 Median 0.97617 0.83815 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 753950 357910 396040 0 0 0 753950 357910 396040 0 0 0 0 0 0 0 0 0 0 0 0 3358 353 3498 17606 18147 18147 1 AVAVGRPSNEELR ______________________________ ______________________________ M A V L R N 2 2 1 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 13 1 1396.7423 D6RGI3;D6RER5;Q9NVA2 D6RGI3 2 14 SEPT11 Septin-11 yes no 2 1.6168E-07 152.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 4 1 4 0.9872 0.97461 13.337 16 Median 0.9173 0.92633 NaN 1 0 Median 0.9768 0.8809 NaN 1 0 Median 0.94878 1.0097 13.656 5 0 Median 1.1088 1.0375 16.356 4 0 Median 0.75432 0.82466 NaN 1 0 Median 1.0415 0.94747 7.6321 4 0 Median 921890000 454710000 467180000 22224000 11920000 10304000 9693500 4997800 4695600 393000000 205590000 187410000 445200000 207610000 237600000 35769000 17104000 18665000 15994000 7493300 8500700 3359 822 3499 17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622 18148;18149;18150;18151;18152;18153;18154;18155;18156;18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168;18169 18163 22 AVAVVVDPIQSVK VDINTQQSFEALSERAVAVVVDPIQSVKGK ERAVAVVVDPIQSVKGKVVIDAFRLINANM R A V V K G 2 0 0 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 5 0 0 13 0 1323.7762 O00487 O00487 140 152 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2 1.0155E-06 113.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0307 0.86508 10.8 7 Median 0.93247 0.85527 0.46749 2 0 Median 1.0677 0.91059 7.251 2 0 Median 1.1549 1.1099 NaN 1 0 Median 1.0436 0.88742 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94633 0.79592 NaN 1 0 Median 161620000 80057000 81560000 135140000 68272000 66870000 17088000 7883400 9204700 7208400 2923200 4285200 1130500 402700 727820 0 0 0 1047500 575510 471960 3360 1468 3500 17623;17624;17625;17626;17627;17628;17629 18170;18171;18172;18173;18174;18175;18176 18171 7 AVCMLSNTTAIAEAWAR PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW CMLSNTTAIAEAWARLDHKFDLMYAKRAFV R A V A R L 5 1 1 0 1 0 1 0 0 1 1 0 1 0 0 1 2 1 0 1 0 0 17 0 1863.8971 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;V9GZ17 P68363 374 390 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 8.376E-15 110.31 By matching By MS/MS By matching 3 1 1 1.2703 1.093 29.795 5 Median NaN NaN NaN 0 0 Median 1.1885 1.009 8.6407 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9936 2.002 NaN 1 0 Median 1.2703 1.093 NaN 1 0 Median 19943000 8349400 11593000 0 0 0 14213000 6421000 7792000 0 0 0 0 0 0 3794300 1156000 2638400 1935300 772520 1162800 3361 2633;3212 3501 17630;17631;17632;17633;17634 18177;18178 18178 2 AVDALLTHCK APTARKQLDKEQVRKAVDALLTHCKSRKNN EQVRKAVDALLTHCKSRKNNYGLLLNENES K A V C K S 2 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1126.5805 O76021;J3QSV6;I3L3C4;I3L3U9;I3L1A3 O76021 39 48 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.00036244 87.308 By MS/MS 1 1.0938 1.0416 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0938 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median 5975400 3360900 2614400 0 0 0 0 0 0 0 0 0 0 0 0 5975400 3360900 2614400 0 0 0 3362 1716 3502 17635 18179;18180 18179 2 AVDDGVNTFK VLRGSTDNLMDDIERAVDDGVNTFKVLTRD DDIERAVDDGVNTFKVLTRDKRLVPGGGAT R A V F K V 1 0 1 2 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1064.5138 P50990 P50990 391 400 CCT8 T-complex protein 1 subunit theta yes yes 2 0.00042117 102.51 By MS/MS By MS/MS 1 3 0.98389 0.85727 6.9293 4 Median 0.89467 0.83477 NaN 1 0 Median 1.074 0.90745 8.3591 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119660000 57584000 62074000 23645000 12723000 10922000 96013000 44862000 51152000 0 0 0 0 0 0 0 0 0 0 0 0 3363 2423 3503 17636;17637;17638;17639 18181;18182;18183;18184;18185 18182 5 AVDDLNLHSYSNLPIWVNK YDHKTFSEILNRVQKAVDDLNLHSYSNLPI LNLHSYSNLPIWVNKLDMEIERILGVRLQA K A V N K L 1 0 3 2 0 0 0 0 1 1 3 1 0 0 1 2 0 1 1 2 0 0 19 0 2197.1168 Q14204 Q14204 884 902 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 1.5928E-05 47.082 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.86314 0.89155 4.853 7 Median 0.85593 0.84108 2.2884 2 0 Median 1.008 0.89139 0.047917 2 0 Median 0.83091 0.91832 4.1848 2 0 Median 1.0482 0.94437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64661000 33616000 31045000 35794000 19225000 16569000 23437000 11452000 11986000 5046100 2756500 2289700 383580 182740 200840 0 0 0 0 0 0 3364 2865 3504 17640;17641;17642;17643;17644;17645;17646 18186;18187;18188;18189;18190;18191 18191 6 AVDEAADALLK AQWRTVEGALKERRKAVDEAADALLKAKEE ERRKAVDEAADALLKAKEELEKMKSVIENA K A V L K A 4 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1114.587 Q16891;B9A067;C9J406;H7C463 Q16891 287 297 IMMT MICOS complex subunit MIC60 yes no 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS 1 1 1 1.4581 1.2244 17.198 3 Median 1.0574 0.9293 NaN 1 0 Median 1.4581 1.2745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4908 1.2244 NaN 1 0 Median 54704000 24727000 29977000 39286000 18525000 20761000 10847000 4317600 6529500 0 0 0 0 0 0 0 0 0 4571300 1884500 2686800 3365 3001 3505 17647;17648;17649 18192;18193;18194;18195;18196;18197 18193 6 AVDFAER FRAHVKHRKGAARLRAVDFAERHGYIKGIV RKGAARLRAVDFAERHGYIKGIVKDIIHDP R A V E R H 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 806.39227 P62917;E9PKU4;E9PKZ0;E9PP36;G3V1A1 P62917 31 37 RPL8 60S ribosomal protein L8 yes no 2 0.0061442 94.262 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 4 2 1.1607 1.076 17.235 13 Median 1.0446 0.9808 21.472 2 0 Median 1.5457 1.2966 19.481 2 1 Median 1.1015 1.0575 NaN 1 0 Median 1.3326 1.1053 3.7961 2 0 Median 0.84263 0.87374 15.514 4 0 Median 1.2797 1.014 18.058 2 0 Median 79184000 34159000 45026000 25683000 10927000 14756000 18693000 6904000 11789000 6716600 3091200 3625400 5361400 2177100 3184400 17965000 9093500 8871300 4765600 1966400 2799200 3366 2610 3506 17650;17651;17652;17653;17654;17655;17656;17657;17658;17659;17660;17661;17662 18198;18199;18200;18201;18202;18203;18204;18205 18203 8 AVDIPHMDIEALK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL AKAVDIPHMDIEALKKLNKNKKLVKKLAKK K A V L K K 2 0 0 2 0 0 1 0 1 2 1 1 1 0 1 0 0 0 0 1 0 0 13 0 1450.749 P62906 P62906 79 91 RPL10A 60S ribosomal protein L10a yes yes 2;3 0.00081592 53.683 By MS/MS By matching By matching By matching 3 1 3 3 0.94517 0.88132 38.664 10 Median 0.88366 0.82442 69.28 3 0 Median NaN NaN NaN 0 0 Median 1.0355 0.99561 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77204 0.78702 25.876 3 0 Median 1.1818 0.9905 18.52 3 0 Plateau 35202000 18980000 16222000 22301000 12431000 9869300 0 0 0 2162100 1046500 1115700 0 0 0 8657900 4553600 4104400 2081200 948330 1132900 3367 2608 3507 17663;17664;17665;17666;17667;17668;17669;17670;17671;17672 18206;18207;18208;18209 18207 4 AVDIPHMDIEALKK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL KAVDIPHMDIEALKKLNKNKKLVKKLAKKY K A V K K L 2 0 0 2 0 0 1 0 1 2 1 2 1 0 1 0 0 0 0 1 0 0 14 1 1578.844 P62906 P62906 79 92 RPL10A 60S ribosomal protein L10a yes yes 2;3 6.3832E-07 117.09 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 2 1 1 0.96441 0.94026 16.981 12 Median 0.92512 0.93707 19.286 3 0 Plateau 0.98392 0.89733 4.4167 3 0 Median 0.87036 0.86811 23.959 2 0 Median 1.2873 1.1583 12.896 2 0 Median 0.93893 1.0027 NaN 1 0 Median 1.0998 0.95455 NaN 1 0 Median 222460000 119090000 103360000 170780000 93571000 77208000 22515000 10796000 11719000 14148000 7441500 6706100 3293400 1556700 1736700 7876800 3881600 3995200 3844700 1844700 2000000 3368 2608 3508;3509 17673;17674;17675;17676;17677;17678;17679;17680;17681;17682;17683;17684 18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220 18214 1270 11 AVDITTPK DTDHEEKASNEDVTKAVDITTPKAARRGRK SNEDVTKAVDITTPKAARRGRKRKAEKQVE K A V P K A 1 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 8 0 843.47018 O75475 O75475 136 143 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.0052175 77.058 By MS/MS By MS/MS By MS/MS 1 1 1 1.1264 0.93708 18.449 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86814 0.85317 NaN 1 0 Median 1.3627 1.2179 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1264 0.93708 NaN 1 0 Median 11433000 5872400 5560100 0 0 0 0 0 0 5689400 3159500 2529900 3298300 1414900 1883400 0 0 0 2444900 1298000 1146800 3369 1674 3510 17685;17686;17687 18221;18222;18223;18224;18225;18226 18222 6 AVDKTNQLMETLK QEEEENIVLEEENKKAVDKTNQLMETLKTI KKAVDKTNQLMETLKTIKKENIQQKAQLDS K A V L K T 1 0 1 1 0 1 1 0 0 0 2 2 1 0 0 0 2 0 0 1 0 0 13 1 1489.781 Q14789 Q14789 2434 2446 GOLGB1 Golgin subfamily B member 1 yes yes 2;3 1.4785E-05 89.231 By MS/MS 2 0.99476 1.0829 8.7365 2 Median 0.99476 1.0829 8.7365 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15724000 7430500 8293100 15724000 7430500 8293100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3370 2900 3511 17688;17689 18227;18228;18229 18228 3 AVDLVEEESGAPGEEQR NRYHMPKETRGQPARAVDLVEEESGAPGEE DLVEEESGAPGEEQRRWEEARLGAASLKFG R A V Q R R 2 1 0 1 0 1 5 2 0 0 1 0 0 0 1 1 0 0 0 2 0 0 17 0 1813.833 O60231;A0A140T947;A2AB15 O60231 311 327 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 1.9441E-13 149.38 By MS/MS By MS/MS By MS/MS 1 2 1 0.83261 0.82222 4.9054 4 Median 0.86581 0.84136 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76122 0.83384 7.7225 2 0 Median 0.94542 0.80352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16492000 8285200 8206800 3327300 1432100 1895200 0 0 0 9280200 4832800 4447300 3884600 2020300 1864300 0 0 0 0 0 0 3371 1605 3512 17690;17691;17692;17693 18230;18231;18232;18233;18234 18231 5 AVDLVEEESGAPGEEQRR NRYHMPKETRGQPARAVDLVEEESGAPGEE LVEEESGAPGEEQRRWEEARLGAASLKFGA R A V R R W 2 2 0 1 0 1 5 2 0 0 1 0 0 0 1 1 0 0 0 2 0 0 18 1 1969.9341 O60231;A0A140T947;A2AB15 O60231 311 328 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 1.7109E-08 92.575 By MS/MS 1 0.93215 1.1337 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93215 1.1337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7248200 3366400 3881800 0 0 0 0 0 0 7248200 3366400 3881800 0 0 0 0 0 0 0 0 0 3372 1605 3513 17694 18235;18236 18235 2 AVDNQVYVATASPAR LTTGPAHWELLQRSRAVDNQVYVATASPAR AVDNQVYVATASPARDDKASYVAWGHSTVV R A V A R D 4 1 1 1 0 1 0 0 0 0 0 0 0 0 1 1 1 0 1 3 0 0 15 0 1560.7896 Q9NQR4 Q9NQR4 196 210 NIT2 Omega-amidase NIT2 yes yes 2 4.6488E-10 138.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.83879 0.80423 20.233 4 Median 0.8065 0.75294 NaN 1 0 Median 1.2452 1.0356 NaN 1 0 Median 0.87236 0.85902 NaN 1 1 Median 0.76614 0.64249 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80522000 42499000 38024000 64970000 35366000 29605000 11809000 5090700 6717800 2927000 1581000 1346000 816170 460920 355250 0 0 0 0 0 0 3373 4064 3514 17695;17696;17697;17698 18237;18238;18239;18240;18241;18242;18243 18240 7 AVDNQVYVATASPARDDK LTTGPAHWELLQRSRAVDNQVYVATASPAR NQVYVATASPARDDKASYVAWGHSTVVNPW R A V D K A 4 1 1 3 0 1 0 0 0 0 0 1 0 0 1 1 1 0 1 3 0 0 18 1 1918.9385 Q9NQR4 Q9NQR4 196 213 NIT2 Omega-amidase NIT2 yes yes 3 0.00021926 38.017 By MS/MS By matching 1 1 1.0366 0.98285 36.083 2 Median 0.76566 0.76152 NaN 1 0 Median 1.4035 1.2685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6264700 3222200 3042400 3435400 1981200 1454300 2829300 1241100 1588200 0 0 0 0 0 0 0 0 0 0 0 0 3374 4064 3515 17699;17700 18244 18244 1 AVDPEDDFQR IGGSEAPAPQNKDQKAVDPEDDFQREMSFY NKDQKAVDPEDDFQREMSFYRQAQAAVLAV K A V Q R E 1 1 0 3 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1190.5204 H7C2Q8;Q99848 H7C2Q8 150 159 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.00036818 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 0.91123 0.85629 11.288 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91123 0.99021 NaN 1 0 Median 0.98544 0.85629 NaN 1 0 Median 0.8581 0.86565 13.163 3 0 Median 0.94355 0.78688 6.0908 2 0 Median 49275000 24154000 25121000 0 0 0 0 0 0 7750100 4226000 3524100 2430200 1224400 1205800 26456000 12836000 13621000 12638000 5868000 6770300 3375 1262 3516 17701;17702;17703;17704;17705;17706;17707 18245;18246;18247;18248;18249;18250 18246 6 AVDPSSVALVTLGSSK HLSAKITIAAYLPLKAVDPSSVALVTLGSS VDPSSVALVTLGSSKEMLFEGGPRPWILEP K A V S K E 2 0 0 1 0 0 0 1 0 0 2 1 0 0 1 4 1 0 0 3 0 0 16 0 1529.8301 Q8TEM1 Q8TEM1 645 660 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 1.0511E-09 117.07 By matching By MS/MS By MS/MS By matching 1 3 2 1 1.2189 1.2987 36.625 7 Median 1.4887 1.5108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1748 1.2616 28.236 3 0 Plateau 0.99485 0.91562 61.844 2 0 Median NaN NaN NaN 0 0 Median 1.5511 1.3377 NaN 1 0 Median 56585000 26888000 29697000 3221000 1139200 2081800 0 0 0 51656000 24991000 26665000 1304700 605460 699240 0 0 0 402920 151490 251420 3376 3477 3517 17708;17709;17710;17711;17712;17713;17714 18251;18252;18253;18254;18255;18256;18257;18258;18259 18253 8 AVDPTSGQLYGLAR LGRVKGRTGLRVVVKAVDPTSGQLYGLARE KAVDPTSGQLYGLARELSDEIQVQVFEKLQ K A V A R E 2 1 0 1 0 1 0 2 0 0 2 0 0 0 1 1 1 0 1 1 0 0 14 0 1446.7467 Q8TEM1 Q8TEM1 1259 1272 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 2.9227E-17 192.26 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.7945 0.86611 47.163 7 Median NaN NaN NaN 0 0 Median 0.6352 0.55852 89.763 2 0 Median 0.77869 0.82863 6.2571 2 0 Median 1.2524 1.0967 10.342 2 0 Median NaN NaN NaN 0 0 Median 0.69764 0.61971 NaN 1 0 Median 163750000 87495000 76257000 0 0 0 13028000 6178300 6849300 142530000 77821000 64712000 7730600 3258700 4471900 0 0 0 459980 236600 223380 3377 3477 3518 17715;17716;17717;17718;17719;17720;17721 18260;18261;18262;18263;18264;18265;18266;18267;18268;18269;18270 18262 11 AVDQSVLLMRPEAELSAATVYNLLPVK HLRVTASPQSLCALRAVDQSVLLMRPEAEL AELSAATVYNLLPVKDLSSFPSSVNQQEED R A V V K D 4 1 1 1 0 1 2 0 0 0 5 1 1 0 2 2 1 0 1 4 0 0 27 1 2926.5838 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 599 625 yes yes 3 8.4311E-06 43.895 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1341500 1341500 0 0 0 0 1341500 1341500 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3378 734 3519 17722 18271 18271 1 AVDSLVPIGR IPRISVREPMQTGIKAVDSLVPIGRGQREL QTGIKAVDSLVPIGRGQRELIIGDRQTGKT K A V G R G 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1025.5869 P25705;K7EK77;K7ENJ4;K7ERX7 P25705 195 204 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.00051724 117.4 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 1 1 1.0002 0.9238 14.95 8 Median 0.9628 0.96025 18.155 5 1 Median 1.0391 0.88872 NaN 1 0 Median 0.87417 0.87118 NaN 1 0 Median 1.2421 1.0654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 209050000 104610000 104440000 188810000 94069000 94743000 1347700 617900 729770 15887000 8503200 7384000 2998100 1417000 1581100 0 0 0 0 0 0 3379 2135 3520 17723;17724;17725;17726;17727;17728;17729;17730;17731 18272;18273;18274;18275;18276;18277;18278 18272 7 AVDSQILPK KEKYEITEQRKIDQKAVDSQILPKIKAIPQ RKIDQKAVDSQILPKIKAIPQLQGYLRSVF K A V P K I 1 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 969.5495 Q02878 Q02878 252 260 RPL6 60S ribosomal protein L6 yes yes 2 0.0073995 76.478 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 2 1.0094 0.89017 12.224 8 Median 0.83827 0.77858 17.743 2 1 Median 0.96364 0.83082 8.1809 2 1 Median NaN NaN NaN 0 0 Median 1.0606 0.89776 NaN 1 1 Median 0.98595 0.98821 NaN 1 0 Median 1.1662 0.96009 3.3131 2 0 Median 107740000 53625000 54114000 31859000 16216000 15643000 29586000 14886000 14700000 0 0 0 2860500 1315800 1544700 20800000 10253000 10547000 22633000 10954000 11679000 3380 2703 3521 17732;17733;17734;17735;17736;17737;17738;17739;17740;17741 18279;18280;18281;18282;18283;18284;18285;18286;18287;18288;18289 18280 11 AVDSSSMREDLFK WSKVKDKVESDPRYKAVDSSSMREDLFKQY YKAVDSSSMREDLFKQYIEKIAKNLDSEKE K A V F K Q 1 1 0 2 0 0 1 0 0 0 1 1 1 1 0 3 0 0 0 1 0 0 13 1 1483.6977 O14776;G3V220 O14776 829 841 TCERG1 Transcription elongation regulator 1 yes no 2;3 5.6567E-13 122.77 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.1022 1.2206 3.7136 5 Median 1.1022 1.1457 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0307 1.1693 NaN 1 0 Median 1.2701 1.2206 NaN 1 0 Median 1.0992 1.2465 NaN 1 0 Median 1.3961 1.2387 NaN 1 0 Median 36552000 17534000 19019000 3094400 1774100 1320300 0 0 0 29572000 13810000 15761000 1178700 502000 676740 2531300 1344700 1186600 176350 102410 73940 3381 1494 3522 17742;17743;17744;17745;17746;17747 18290;18291;18292 18292 3 AVDTLAYLSDGDAR SSNSSSEPAMFIEDKAVDTLAYLSDGDARA KAVDTLAYLSDGDARAGLNGLQLAVLARLS K A V A R A 3 1 0 3 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1465.7049 Q96S55 Q96S55 428 441 WRNIP1 ATPase WRNIP1 yes yes 2 6.563E-05 90.685 By MS/MS 1 1.2478 1.198 NaN 1 Median 1.2478 1.198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4564300 1868400 2695900 4564300 1868400 2695900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3382 3730 3523 17748 18293 18293 1 AVDTWSWGER PRSDLAVPSELALLKAVDTWSWGERASHEE LALLKAVDTWSWGERASHEEVEGLVEKIRF K A V E R A 1 1 0 1 0 0 1 1 0 0 0 0 0 0 0 1 1 2 0 1 0 0 10 0 1205.5465 Q08380 Q08380 324 333 LGALS3BP Galectin-3-binding protein yes yes 2 0.00038066 80.239 By MS/MS By matching 4 1 1.1462 1.1117 17.271 5 Median 1.0267 1.0158 15.055 4 0 Median 1.4448 1.278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14443000 6834900 7608100 13184000 6341500 6842800 1258700 493360 765320 0 0 0 0 0 0 0 0 0 0 0 0 3383 2739 3524 17749;17750;17751;17752;17753 18294;18295;18296;18297 18295 4 AVEAAQLAEDLKVQLEHVQTR ELTLRSQALELNKRKAVEAAQLAEDLKVQL LAEDLKVQLEHVQTRLREIQPCLAESRAAR K A V T R L 4 1 0 1 0 3 3 0 1 0 3 1 0 0 0 0 1 0 0 3 0 0 21 1 2347.2496 O75150;H3BP71;A0A087WTK2 O75150 863 883 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3;4 0.012783 24.875 By MS/MS 2 0.68441 0.78067 42.055 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68441 0.78067 42.055 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3334100 1817100 1517000 0 0 0 0 0 0 3334100 1817100 1517000 0 0 0 0 0 0 0 0 0 3384 1648 3525 17754;17755 18298;18299 18299 2 AVEAVVNDTSGENK AAAKEICQAIGKQMKAVEAVVNDTSGENKS KAVEAVVNDTSGENKSGAADIAASQHVMVC K A V N K S 2 0 2 1 0 0 2 1 0 0 0 1 0 0 0 1 1 0 0 3 0 0 14 0 1431.6842 Q9P2D3 Q9P2D3 391 404 HEATR5B HEAT repeat-containing protein 5B yes yes 2 0.0022058 44.309 By MS/MS 1 1.3554 1.1743 NaN 1 Median NaN NaN NaN 0 0 Median 1.3554 1.1743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 659080 288430 370650 0 0 0 659080 288430 370650 0 0 0 0 0 0 0 0 0 0 0 0 3385 4221 3526 17756 18300 18300 1 AVEDAIAR ASTLSRREELLKQLKAVEDAIARKRAKIPG ELLKQLKAVEDAIARKRAKIPGKA______ K A V A R K 3 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 843.44503 Q86VM9;E7ERS3;H3BRH3 Q86VM9 937 944 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 2 0.046986 58.981 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3386 884 3527 17757 18301 18301 1 AVEDDFVEMR LLRFLEYSISDEITKAVEDDFVEMRKNDPQ DEITKAVEDDFVEMRKNDPQSITADDLHQL K A V M R K 1 1 0 2 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 10 0 1209.5336 Q9BTE3 Q9BTE3 572 581 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.0061875 49.418 By matching By MS/MS 1 1 1.6887 1.5347 1.4785 2 Median 1.5948 1.5188 NaN 1 0 Median 1.7882 1.5509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4771100 1248800 3522400 1980200 346900 1633300 2791000 901850 1889100 0 0 0 0 0 0 0 0 0 0 0 0 3387 3825 3528 17758;17759 18302;18303 18303 2 AVEDFLR CSVNATPQQMPQTEKAVEDFLRSIGRSKKE QQMPQTEKAVEDFLRSIGRSKKERRPVRPH K A V L R S 1 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 848.43922 Q5JRX3;A0A0A0MRX9;H0Y7L7;B1APQ1 Q5JRX3 795 801 PITRM1 Presequence protease, mitochondrial yes no 2 0.068844 64.776 By MS/MS By MS/MS By matching 1 1 1 1.5406 1.3212 11.116 2 Median NaN NaN NaN 0 0 Median 1.4233 1.2213 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6675 1.4292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2574100 1035000 1539100 0 0 0 1933400 780540 1152900 0 0 0 640740 254490 386250 0 0 0 0 0 0 3388 3050 3529 17760;17761;17762 18304;18305 18304 2 AVEDIHGLFSLSK LDSAISMELWQEAFKAVEDIHGLFSLSKKP FKAVEDIHGLFSLSKKPPKPQLMANYYNKV K A V S K K 1 0 0 1 0 0 1 1 1 1 2 1 0 1 0 2 0 0 0 1 0 0 13 0 1414.7456 Q14152 Q14152 252 264 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 8.9586E-33 157.68 By MS/MS By matching By matching By matching By matching 4 2 1 1 1 1.1793 1.1084 9.8179 8 Median 1.1674 1.1756 12.823 3 0 Median 1.1846 1.046 0.61033 2 0 Median 1.0437 1.1574 NaN 1 0 Median 1.1751 1.0615 NaN 1 0 Median 1.2109 1.2706 NaN 1 0 Median NaN NaN NaN 0 0 Median 44662000 20452000 24210000 27731000 12934000 14797000 14687000 6507900 8179300 858430 385280 473150 137110 51717 85394 1248500 573170 675370 0 0 0 3389 2860 3530 17763;17764;17765;17766;17767;17768;17769;17770;17771 18306;18307;18308 18308 3 AVEEEDKMTPEQLAIK SVVKEMLELAKNYNKAVEEEDKMTPEQLAI VEEEDKMTPEQLAIKNVGKQDPKRHLEEHV K A V I K N 2 0 0 1 0 1 4 0 0 1 1 2 1 0 1 0 1 0 0 1 0 0 16 1 1829.9081 O00487 O00487 258 273 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 3 0.0076409 26.781 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1515 1.1522 11.824 4 Median 1.1334 1.1007 NaN 1 1 Median 1.0505 0.94599 NaN 1 0 Median 1.17 1.2234 NaN 1 0 Median 1.3735 1.206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31447000 14172000 17275000 14463000 6584700 7878100 7967100 3644500 4322500 7659500 3413900 4245600 1357500 528500 829030 0 0 0 0 0 0 3390 1468 3531 17772;17773;17774;17775 18309;18310;18311 18310 3 AVEEKIEWLESHQDADIEDFKAK LGGKLSSEDKETMEKAVEEKIEWLESHQDA LESHQDADIEDFKAKKKELEEIVQPIISKL K A V A K K 3 0 0 3 0 1 5 0 1 2 1 3 0 1 0 1 0 1 0 1 0 0 23 2 2729.3184 P11021 P11021 597 619 HSPA5 78 kDa glucose-regulated protein yes yes 4 1.3719E-11 53.201 By MS/MS 1 1.2216 1.1936 NaN 1 Median 1.2216 1.1936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18542000 7739700 10803000 18542000 7739700 10803000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3391 1948 3532 17776 18312;18313 18312 2 AVEELKNNVTEDIK ALIISNTKSLAKYLKAVEELKNNVTEDIKM KAVEELKNNVTEDIKMSLEEKSRDVCAKWE K A V I K M 1 0 2 1 0 0 3 0 0 1 1 2 0 0 0 0 1 0 0 2 0 0 14 1 1600.8308 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 899 912 SYNE2 Nesprin-2 yes no 2;3 4.9886E-05 90.05 By MS/MS 2 0.76282 0.86577 0.54902 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76282 0.86577 0.54902 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12949000 6680600 6268500 0 0 0 0 0 0 12949000 6680600 6268500 0 0 0 0 0 0 0 0 0 3392 3521 3533 17777;17778 18314;18315;18316 18314 3 AVEELQSIIKR ______________________________ ______________________________ M A V K R C 1 1 0 0 0 1 2 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 11 1 1284.7402 Q92990 Q92990 2 12 GLMN Glomulin yes yes 2 6.2703E-05 114.84 By MS/MS 2 0.87071 0.8803 0.60562 2 Median 0.87071 0.8803 0.60562 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5316200 2562700 2753400 5316200 2562700 2753400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3393 3572 3534 17779;17780 18317;18318 18318 2 AVEENGEEAEPVR GFHPERDPSDLKKVKAVEENGEEAEPVRNG VKAVEENGEEAEPVRNGAESVSEGEGIDAN K A V V R N 2 1 1 0 0 0 5 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 13 0 1427.6529 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 755 767 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.039368 42.743 By MS/MS 1 0.73064 0.73039 NaN 1 Median 0.73064 0.73039 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 790290 461020 329270 790290 461020 329270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3394 300 3535 17781 18319 18319 1 AVEEQIEYLQK ENKKMADEDALRKIRAVEEQIEYLQKKLAM RKIRAVEEQIEYLQKKLAMAKQEEEALLSE R A V Q K K 1 0 0 0 0 2 3 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1348.6874 Q5VTR2 Q5VTR2 706 716 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.0001218 145.92 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.0688 0.98455 12.658 5 Median 1.0688 1.0392 NaN 1 0 Median 0.9741 0.8487 NaN 1 0 Median 0.92386 0.98455 NaN 1 0 Median 1.2275 1.0723 16.038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40652000 20017000 20635000 6656900 3287600 3369300 2880200 1325400 1554800 22600000 11579000 11021000 8515000 3824800 4690200 0 0 0 0 0 0 3395 3112 3536 17782;17783;17784;17785;17786 18320;18321;18322;18323;18324 18322 5 AVEFLASNESR IPPQSRRRMKRVWDRAVEFLASNESRIQTE VWDRAVEFLASNESRIQTESHRVAGEDMLV R A V S R I 2 1 1 0 0 0 2 0 0 0 1 0 0 1 0 2 0 0 0 1 0 0 11 0 1221.599 Q8NC56;H0Y9B7 Q8NC56 464 474 LEMD2 LEM domain-containing protein 2 yes no 2 0.00017707 111.65 By matching By MS/MS By MS/MS 1 1 2 1.1863 1.0548 6.1902 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1576 1.0007 NaN 1 0 Median 1.1633 1.1577 NaN 1 0 Median 1.2685 1.0548 2.1506 2 1 Median 36172000 16318000 19854000 0 0 0 0 0 0 0 0 0 983380 449140 534250 22275000 10055000 12220000 12914000 5813600 7100600 3396 3415 3537 17787;17788;17789;17790 18325;18326;18327;18328 18325 4 AVEGLLDATSGADADLLLR RNSRDAIAALGLLQKAVEGLLDATSGADAD LLDATSGADADLLLRYRECHLLVLKALQDG K A V L R Y 4 1 0 3 0 0 1 2 0 0 5 0 0 0 0 1 1 0 0 1 0 0 19 0 1898.9949 A5YKK6;H3BMZ2 A5YKK6 1665 1683 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0022379 30.828 By MS/MS 1 1.0568 0.90272 NaN 1 Median NaN NaN NaN 0 0 Median 1.0568 0.90272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6135000 2979400 3155600 0 0 0 6135000 2979400 3155600 0 0 0 0 0 0 0 0 0 0 0 0 3397 503 3538 17791 18329;18330 18329 2 AVEHINKTIAPALVSK RDNDKTRYMGKGVSKAVEHINKTIAPALVS VEHINKTIAPALVSKKLNVTEQEKIDKLMI K A V S K K 3 0 1 0 0 0 1 0 1 2 1 2 0 0 1 1 1 0 0 2 0 0 16 1 1689.9778 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 65 80 ENO1 Alpha-enolase;Enolase yes no 3 0.020577 20.389 By MS/MS By matching 1 1 0.93889 0.89252 12.724 2 Median 1.0156 0.97655 NaN 1 0 Median 0.86795 0.81572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7153900 3657700 3496200 3979400 1909500 2069900 3174500 1748200 1426300 0 0 0 0 0 0 0 0 0 0 0 0 3398 1873 3539 17792;17793 18331 18331 1 AVEHLDDLPGALSELSDLHAHK QVKGHGAKVAAALTKAVEHLDDLPGALSEL LPGALSELSDLHAHKLRVDPVNFKLLSHSL K A V H K L 3 0 0 3 0 0 2 1 3 0 5 1 0 0 1 2 0 0 0 1 0 0 22 0 2366.1866 CON__P01966 CON__P01966 70 91 yes yes 3;4;5 1.3482E-12 73.21 By MS/MS By MS/MS By MS/MS 3 1 1 0.040263 0.038279 37.583 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.040472 0.03864 1.3282 2 2 Median NaN NaN NaN 0 0 Median 0.017726 0.020157 NaN 1 1 Median NaN NaN NaN 0 0 Median 171560000 171030000 531540 0 0 0 0 0 0 55744000 55229000 514910 0 0 0 2818800 2802200 16627 113000000 113000000 0 + 3399 738 3540 17794;17795;17796;17797;17798 18332;18333;18334;18335;18336;18337 18336 6 AVEIEELTYIIK KLTILAKRKSLFDDKAVEIEELTYIIKQDI DDKAVEIEELTYIIKQDINSLNKQIAQLQD K A V I K Q 1 0 0 0 0 0 3 0 0 3 1 1 0 0 0 0 1 0 1 1 0 0 12 0 1419.7861 Q13190;E9PNU4 Q13190 129 140 STX5 Syntaxin-5 yes no 2 3.6948E-08 98.048 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3400 975 3541 17799 18338 18338 1 AVEILADIIQNSTLGEAEIER QTVYYAKAFSKDLPRAVEILADIIQNSTLG DIIQNSTLGEAEIERERGVILREMQEVETN R A V E R E 3 1 1 1 0 1 4 1 0 4 2 0 0 0 0 1 1 0 0 1 0 0 21 0 2283.1958 O75439;G3V0E4 O75439 153 173 PMPCB Mitochondrial-processing peptidase subunit beta yes no 3 0.00030183 29.444 By matching By MS/MS 1 1 1.1056 1.0316 2.966 2 Median NaN NaN NaN 0 0 Median 1.208 1.0535 NaN 1 0 Median 1.0118 1.0102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2410400 1139700 1270700 0 0 0 974490 472790 501690 1435900 666900 768980 0 0 0 0 0 0 0 0 0 3401 1673 3542 17800;17801 18339;18340 18340 2 AVEIVTSTSAAK KVSASTLKRDADASKAVEIVTSTSAAKTGQ ASKAVEIVTSTSAAKTGQAKASVAKVNKST K A V A K T 3 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 2 0 0 2 0 0 12 0 1175.6398 Q14966 Q14966 783 794 ZNF638 Zinc finger protein 638 yes yes 2 5.4737E-06 98.943 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1.2155 1.0742 21.644 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95334 1.0529 NaN 1 0 Median 1.6046 1.4564 NaN 1 0 Median 1.1803 1.2358 NaN 1 0 Median 1.2793 1.096 19.66 3 0 Plateau 26544000 12086000 14458000 0 0 0 0 0 0 10445000 5569000 4876200 1590900 691390 899480 6309100 2237700 4071500 8199100 3588000 4611000 3402 2903 3543 17802;17803;17804;17805;17806;17807 18341;18342;18343;18344;18345;18346;18347 18343 7 AVELAANTK TSTVFYPSDGVATEKAVELAANTKGICFIR GVATEKAVELAANTKGICFIRTSRPENAII K A V T K G 3 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 915.50255 P29401;A0A0B4J1R6 P29401 457 465 TKT Transketolase yes no 2 0.00067887 105.14 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0211 0.91482 6.0432 4 Median 0.99225 0.92935 NaN 1 0 Median 1.0803 0.89934 NaN 1 0 Median 0.96251 1.0225 NaN 1 0 Median 1.0508 0.90051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53844000 25032000 28812000 15087000 7151600 7935300 35857000 16433000 19424000 2592600 1303600 1288900 308270 143810 164470 0 0 0 0 0 0 3403 2173 3544 17808;17809;17810;17811 18348;18349;18350;18351;18352;18353;18354;18355;18356 18350 9 AVELDSESR RQDPQSTAAATVLKRAVELDSESRYPQALV ATVLKRAVELDSESRYPQALVCYQEGIDLL R A V S R Y 1 1 0 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1004.4775 B8ZZL5;Q8WV92;F8WED5;A0A1W2PP14;H7C3Q6 B8ZZL5 22 30 MITD1 MIT domain-containing protein 1 yes no 2 0.0011181 85.064 By MS/MS 1 0.6739 0.62957 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6739 0.62957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1120100 593260 526850 0 0 0 0 0 0 1120100 593260 526850 0 0 0 0 0 0 0 0 0 3404 648 3545 17812 18357;18358 18358 2 AVELLPDGTANLAK LSTAEREQALRLKSRAVELLPDGTANLAKL RAVELLPDGTANLAKLQLVVENSAQRVIHL R A V A K L 3 0 1 1 0 0 1 1 0 0 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1410.7718 O60826 O60826 389 402 CCDC22 Coiled-coil domain-containing protein 22 yes yes 2 0.00097082 53.683 By MS/MS By matching 1 1 1.0334 0.9405 26.408 2 Median 0.81341 0.7803 NaN 1 0 Median 1.3129 1.1336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6734000 3656700 3077300 4460100 2504400 1955800 2273900 1152300 1121500 0 0 0 0 0 0 0 0 0 0 0 0 3405 1632 3546 17813;17814 18359;18360 18359 2 AVELLRK SILDRYYTPTISRERAVELLRKCLEELQKR TPTISRERAVELLRKCLEELQKRFILNLPT R A V R K C 1 1 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 1 827.52289 P49721;A0A087WVV1 P49721 156 162 PSMB2 Proteasome subunit beta type-2 yes no 2 0.017481 77.748 By MS/MS By MS/MS 1 1 0.63232 0.60335 46.292 2 Median 0.83571 0.83701 NaN 1 1 Median 0.47843 0.43492 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45106000 27374000 17732000 25362000 13259000 12104000 19744000 14116000 5628200 0 0 0 0 0 0 0 0 0 0 0 0 3406 2392 3547 17815;17816 18361;18362 18362 2 AVELMDR SNWKERLACMEEFQKAVELMDRTEMPCQAL ACMEEFQKAVELMDRTEMPCQALVRMLAKK K A V D R T 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 832.41129 Q14008 Q14008 626 632 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.030096 65.252 By MS/MS 1 1.3118 1.0964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3118 1.0964 NaN 1 1 Median 1194300 454030 740240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1194300 454030 740240 3407 2850 3548 17817 18363 18363 1 AVEMAAQR LENGRFIAGTGCLVRAVEMAAQRQADIIGK GTGCLVRAVEMAAQRQADIIGKPSRFIFDC R A V Q R Q 3 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 8 0 874.43309 A6NDG6 A6NDG6 221 228 PGP Phosphoglycolate phosphatase yes yes 2 0.063853 49.358 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3408 506 3549 17818 18364 18364 1 AVENSSTAIGIR FSPDGRVFQVEYAMKAVENSSTAIGIRCKD AMKAVENSSTAIGIRCKDGVVFGVEKLVLS K A V I R C 2 1 1 0 0 0 1 1 0 2 0 0 0 0 0 2 1 0 0 1 0 0 12 0 1216.6412 P25788 P25788 30 41 PSMA3 Proteasome subunit alpha type-3 yes yes 2 6.7057E-24 186.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.1909 1.0903 17.555 6 Median 1.1261 1.0861 1.4301 2 0 Median 1.3719 1.1618 9.8717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2306 1.2169 NaN 1 0 Median 0.94082 0.7638 NaN 1 0 Median 141230000 63556000 77674000 96588000 44315000 52273000 39856000 16878000 22978000 0 0 0 0 0 0 3317300 1565400 1752000 1469200 797850 671330 3409 2137 3550 17819;17820;17821;17822;17823;17824;17825;17826 18365;18366;18367;18368;18369;18370;18371;18372;18373;18374;18375 18368 11 AVENYLIQMAR ARLSNLALVKPEKTKAVENYLIQMARYGQL EKTKAVENYLIQMARYGQLSEKVSEQGLIE K A V A R Y 2 1 1 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 11 0 1306.6704 O14737;K7EQA1 O14737 69 79 PDCD5 Programmed cell death protein 5 yes no 2 3.2277E-06 157.91 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.152 1.1103 27.792 5 Median 1.152 1.1103 NaN 1 0 Median 1.149 0.97732 44.224 2 0 Median 0.76575 0.77533 NaN 1 0 Median 1.5367 1.2109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 204970000 94322000 110650000 179750000 81268000 98483000 9988800 4885700 5103100 13572000 7544000 6027500 1662200 624590 1037600 0 0 0 0 0 0 3410 1491 3551;3552 17827;17828;17829;17830;17831 18376;18377;18378;18379;18380;18381;18382;18383 18377 479 8 AVEQGGAFSNPETLDLYR GKKVEVAVKQIIAGKAVEQGGAFSNPETLD QGGAFSNPETLDLYRDIPELQGF_______ K A V Y R D 2 1 1 1 0 1 2 2 0 0 2 0 0 1 1 1 1 0 1 1 0 0 18 0 1965.9432 Q86V21 Q86V21 647 664 AACS Acetoacetyl-CoA synthetase yes yes 2 6.7328E-08 92.925 By MS/MS By matching 1 1 0.94026 0.94357 32.661 2 Median 0.77262 0.74898 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1443 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9450500 5010100 4440400 5494700 3076700 2418000 0 0 0 3955800 1933400 2022400 0 0 0 0 0 0 0 0 0 3411 3284 3553 17832;17833 18384;18385 18385 2 AVETPPLSSVNLLEGLSR KSCVAAFLDVVIGGRAVETPPLSSVNLLEG TPPLSSVNLLEGLSRTVVYITYSQLITLVN R A V S R T 1 1 1 0 0 0 2 1 0 0 4 0 0 0 2 3 1 0 0 2 0 0 18 0 1881.0207 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;H0Y7I9;H0Y4E7;A0A0A0MQV8 Q14C86 387 404 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 1.0987E-05 53.252 By MS/MS 1 0.86112 0.84472 NaN 1 Median 0.86112 0.84472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3193200 1610900 1582300 3193200 1610900 1582300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3412 2907 3554 17834 18386;18387;18388 18387 3 AVEVAWETLQEEFSR DIKLKQWTDKQLPNKAVEVAWETLQEEFSR AVEVAWETLQEEFSRFMTEPKGKEHDDIFD K A V S R F 2 1 0 0 0 1 4 0 0 0 1 0 0 1 0 1 1 1 0 2 0 0 15 0 1792.8632 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1 A0A2R8Y3X5 563 577 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.00028434 69.01 By MS/MS By MS/MS 1 1 1.2991 1.2049 11.843 2 Median 1.1192 1.1081 NaN 1 0 Median 1.508 1.3101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3979900 1612900 2367000 1814700 815430 999290 2165200 797440 1367700 0 0 0 0 0 0 0 0 0 0 0 0 3413 357 3555 17835;17836 18389;18390;18391 18390 3 AVEVQGPSLESGDHGK VQVPAVDISSSLGGRAVEVQGPSLESGDHG VEVQGPSLESGDHGKIKFPTMKVPKFGVST R A V G K I 1 0 0 1 0 1 2 3 1 0 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1608.7744 Q09666 Q09666 288 303 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 3.9049E-07 90.367 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 6 1 1 0.91867 0.85533 21.704 14 Median 0.6595 0.65745 7.5704 3 1 Plateau 0.97699 0.85951 NaN 1 0 Median 1.0952 1.189 10.744 2 0 Median 0.91867 0.85925 11.735 6 1 Median 0.96013 1.0107 NaN 1 0 Median 0.8499 0.72825 NaN 1 0 Median 58930000 31230000 27700000 14447000 9101600 5345900 2821500 1417700 1403900 11208000 5406300 5801300 24718000 12211000 12507000 3241500 1611200 1630300 2494300 1482200 1012100 3414 2749 3556 17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852 18392;18393;18394;18395;18396;18397;18398;18399;18400;18401;18402;18403;18404;18405;18406;18407;18408 18398 17 AVEYFQDNSPDSPELNK GRLEEYLGSMAKIQKAVEYFQDNSPDSPEL EYFQDNSPDSPELNKVKLLFERGKEALESE K A V N K V 1 0 2 2 0 1 2 0 0 0 1 1 0 1 2 2 0 0 1 1 0 0 17 0 1951.88 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07;B5MCY9;K7ERQ5;C9JME6;C9JKC2 A0A0A0MSB8 122 138 EXOC7 Exocyst complex component 7 yes no 2 1.6643E-07 74.76 By MS/MS 1 0.5398 0.56148 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5398 0.56148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6343500 3915100 2428400 0 0 0 0 0 0 6343500 3915100 2428400 0 0 0 0 0 0 0 0 0 3415 179 3557 17853 18409 18409 1 AVEYLLMGIPGDR QVIAALRASFNNPDRAVEYLLMGIPGDRES DRAVEYLLMGIPGDRESQAVVDPPQAASTG R A V D R E 1 1 0 1 0 0 1 2 0 1 2 0 1 0 1 0 0 0 1 1 0 0 13 0 1432.7384 P54727 P54727 221 233 RAD23B UV excision repair protein RAD23 homolog B yes yes 2 9.9221E-07 99.215 By MS/MS By MS/MS By matching By matching 1 2 4 1 0.88286 0.844 23.049 8 Median NaN NaN NaN 0 0 Median 1.0107 0.85056 NaN 1 0 Median 0.75586 0.77696 10.609 2 0 Median 1.4324 1.2532 29.459 4 0 Linear NaN NaN NaN 0 0 Median 0.78102 0.68852 NaN 1 0 Median 24041000 12439000 11602000 0 0 0 10368000 4931600 5436900 11881000 6705100 5176200 1558400 683130 875290 0 0 0 232860 119390 113470 3416 2486 3558;3559 17854;17855;17856;17857;17858;17859;17860;17861 18410;18411;18412;18413;18414;18415 18412 1166 6 AVEYNALFK VSIYGSSIDVELQQRAVEYNALFKKYDHMR VELQQRAVEYNALFKKYDHMRSALLERMPV R A V F K K 2 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1053.5495 O43747 O43747 563 571 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.0071437 52.403 By MS/MS By MS/MS 2 3 1.3088 1.173 60.348 5 Median 1.2217 1.1117 7.5933 2 0 Median 1.3455 1.1757 77.107 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96751000 43586000 53165000 73623000 33621000 40002000 23128000 9964600 13163000 0 0 0 0 0 0 0 0 0 0 0 0 3417 1587 3560 17862;17863;17864;17865;17866 18416;18417;18418 18416 3 AVEYYFASDASAVIEHTNR SRVDSTTCLFPVEEKAVEYYFASDASAVIE YFASDASAVIEHTNRVIFLEDDDVAAVVDG K A V N R V 4 1 1 1 0 0 2 0 1 1 0 0 0 1 0 2 1 0 2 2 0 0 19 0 2142.0018 Q06210 Q06210 272 290 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 1.3267E-07 67.995 By MS/MS 1 1.4349 1.3736 NaN 1 Median 1.4349 1.3736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5073000 1872900 3200100 5073000 1872900 3200100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3418 2723 3561 17867 18419 18419 1 AVFDETYPDPVR QDCPLAAAKAIQGLRAVFDETYPDPVRVVS GLRAVFDETYPDPVRVVSIGVPVSELLDDP R A V V R V 1 1 0 2 0 0 1 0 0 0 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1407.667 P49588;H3BPK7 P49588 684 695 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 5.0146E-06 125.56 By MS/MS By MS/MS 2 1 0.86259 0.77523 2.9286 2 Median 0.82309 0.79145 NaN 1 0 Median 0.90398 0.75934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39677000 21034000 18643000 32881000 17669000 15212000 6795500 3364800 3430700 0 0 0 0 0 0 0 0 0 0 0 0 3419 2385 3562 17868;17869;17870 18420;18421;18422;18423;18424;18425 18423 6 AVFDNLIQLEHLNIVK FSERKNYKLQEEKVRAVFDNLIQLEHLNIV VFDNLIQLEHLNIVKFHKYWADIKENKARV R A V V K F 1 0 2 1 0 1 1 0 1 2 3 1 0 1 0 0 0 0 0 2 0 0 16 0 1865.0411 Q9UHY1;F8W6G1;C9JHZ6 Q9UHY1 116 131 NRBP1 Nuclear receptor-binding protein yes no 2 0.00091497 40.589 By MS/MS 1 1.0841 0.93593 NaN 1 Median NaN NaN NaN 0 0 Median 1.0841 0.93593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2368200 1113400 1254800 0 0 0 2368200 1113400 1254800 0 0 0 0 0 0 0 0 0 0 0 0 3420 4285 3563 17871 18426 18426 1 AVFHEEEQR NEPLSDSESEDERPRAVFHEEEQRRPKHRP EDERPRAVFHEEEQRRPKHRPSEADEEELA R A V Q R R 1 1 0 0 0 1 3 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 9 0 1143.5309 O14617;A0A2R8Y611 O14617 643 651 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.0070414 52.716 By MS/MS 1 1.0589 0.90685 NaN 1 Median NaN NaN NaN 0 0 Median 1.0589 0.90685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2112700 939320 1173400 0 0 0 2112700 939320 1173400 0 0 0 0 0 0 0 0 0 0 0 0 3421 1485 3564 17872 18427 18427 1 AVFPLLYVR CRDLGLKDSVLAGLKAVFPLLYVRRIEGEV VLAGLKAVFPLLYVRRIEGEVNEILFCQLH K A V V R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 2 0 0 9 0 1076.6383 Q8N6R0 Q8N6R0 632 640 METTL13 Methyltransferase-like protein 13 yes yes 2 0.04898 31.289 By matching By matching By MS/MS 1 1 1 0.91019 1.1366 17.216 3 Plateau 0.90232 0.89695 NaN 1 0 Median 0.91019 0.83102 NaN 1 0 Median 1.0823 1.1547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3947600 1926400 2021300 1078400 533340 545030 655070 335550 319520 2214200 1057500 1156700 0 0 0 0 0 0 0 0 0 3422 3388 3565 17873;17874;17875 18428 18428 1 AVFPSIVGR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV GDDAPRAVFPSIVGRPRHQGVMVGMGQKDS R A V G R P 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 2 0 0 9 0 944.54435 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;F8WCH0;P68032;P68133;A6NL76;Q6S8J3;A5A3E0;P0CG38 P63261 29 37 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEI Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I no no 1;2 0.00043771 127.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 4 2 2 5 0.92481 0.81176 18.455 24 Median 1.2311 1.2087 31.473 5 1 Linear 0.99311 0.8309 22.728 6 0 Median 0.73877 0.7672 10.697 4 0 Median 1.0079 0.87413 2.5279 2 0 Median 0.77809 0.78387 0.13259 2 0 Median 0.95113 0.80824 12.028 5 0 Median 1931500000 978770000 952710000 512340000 257760000 254580000 958990000 466760000 492230000 413720000 229870000 183850000 8236800 4072700 4164100 18374000 10508000 7866600 19817000 9800400 10016000 3423 2625;2630;2595;3181 3566 17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897;17898;17899 18429;18430;18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444;18445;18446;18447;18448;18449;18450;18451;18452;18453;18454;18455;18456;18457 18442 28 AVFPSIVGRPR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV R A V P R H 1 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 0 0 2 0 0 11 1 1197.6982 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;F8WCH0;P68032;P68133;A6NL76;Q6S8J3;A5A3E0;P0CG38 P63261 29 39 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEI Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I no no 1;2;3 1.9785E-14 189.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 17 18 7 12 9 0.87286 0.86041 29.768 83 Median 0.84352 0.88079 13.482 20 0 Median 0.94654 0.8663 19.354 17 0 Median 0.74758 0.797 52.524 18 2 Median 1.0716 1 18.502 7 0 Median 0.83923 0.92481 18.847 12 0 Median 0.93506 0.82669 26.659 9 0 Median 10176000000 5517500000 4658000000 4803100000 2576100000 2227000000 1963900000 967730000 996120000 2266200000 1362600000 903600000 308960000 144930000 164030000 714700000 407700000 307000000 118750000 58499000 60247000 3424 2625;2630;2595;3181 3567 17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911;17912;17913;17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924;17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937;17938;17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949;17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960;17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982 18458;18459;18460;18461;18462;18463;18464;18465;18466;18467;18468;18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486;18487;18488;18489;18490;18491;18492;18493;18494;18495;18496;18497;18498;18499;18500;18501;18502;18503;18504;18505;18506;18507;18508;18509;18510;18511;18512;18513;18514;18515;18516;18517;18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554;18555;18556;18557;18558;18559;18560;18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583;18584;18585;18586;18587;18588;18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599;18600;18601;18602;18603;18604;18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620;18621;18622;18623;18624;18625;18626;18627;18628;18629;18630;18631;18632;18633 18503 175 AVFQANQENLPILK ATWLALSRIAGLCNRAVFQANQENLPILKR RAVFQANQENLPILKRAVAGDASESALLKC R A V L K R 2 0 2 0 0 2 1 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 14 0 1583.8671 P05023 P05023 431 444 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 2.3579E-08 123.75 By MS/MS By MS/MS By MS/MS By matching 4 3 1 1 1.0003 0.92918 11.306 9 Median 0.96317 0.93152 6.8369 4 0 Median 1.0003 0.88522 1.9138 3 0 Median 1.1093 1.2005 NaN 1 0 Median 1.2156 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112460000 55576000 56887000 84954000 42072000 42881000 23653000 11633000 12020000 3629600 1749100 1880600 226650 121130 105520 0 0 0 0 0 0 3425 1857 3568 17983;17984;17985;17986;17987;17988;17989;17990;17991 18634;18635;18636;18637;18638;18639;18640;18641;18642;18643;18644;18645;18646;18647;18648;18649;18650 18637 17 AVFQANQENLPILKR ATWLALSRIAGLCNRAVFQANQENLPILKR AVFQANQENLPILKRAVAGDASESALLKCI R A V K R A 2 1 2 0 0 2 1 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 15 1 1739.9683 P05023 P05023 431 445 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 3 2.865E-05 68.513 By MS/MS 1 0.89976 0.90634 NaN 1 Median 0.89976 0.90634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7199000 3855600 3343400 7199000 3855600 3343400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3426 1857 3569 17992 18651 18651 1 AVFQESIR SQMVEMEEQVVEDHRAVFQESIRWLEDEKA QVVEDHRAVFQESIRWLEDEKALLEMTEEV R A V I R W 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 O00139 O00139 630 637 KIF2A Kinesin-like protein KIF2A yes yes 2 0.0044851 81.297 By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.0593 1.0202 11.921 6 Median 0.84001 0.81922 NaN 1 0 Median 1.2034 1.0518 NaN 1 0 Median 0.98532 1.0243 9.7612 2 0 Median 1.1483 0.98955 NaN 1 0 Median 1.089 1.1438 NaN 1 0 Median NaN NaN NaN 0 0 Median 17551000 8445800 9105200 1186900 608040 578860 1739900 803540 936350 7525400 3402700 4122700 2730300 1348800 1381500 4368500 2282700 2085800 0 0 0 3427 1440 3570 17993;17994;17995;17996;17997;17998 18652;18653;18654 18652 3 AVFVDLEPTVIDEVR NTFFSETGAGKHVPRAVFVDLEPTVIDEVR AVFVDLEPTVIDEVRTGTYRQLFHPEQLIT R A V V R T 1 1 0 2 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 4 0 0 15 0 1700.8985 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;P68363;Q71U36;F8VQQ4 P68363 65 79 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 2;3 3.3248E-19 184.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 20 11 11 12 23 1.0177 0.87807 33.805 91 Median 0.86412 0.82785 19.791 14 1 Median 0.9863 0.83556 41.454 20 1 Median 0.915 0.94619 23.669 11 1 Median 1.0392 0.8822 26.253 11 2 Median 1.4695 1.4771 10.419 12 0 Median 1.0576 0.85756 12.937 23 0 Median 2586100000 1269400000 1316700000 223350000 117680000 105670000 417760000 225170000 192590000 649430000 333570000 315870000 377690000 183830000 193860000 145400000 51917000 93480000 772470000 357280000 415200000 3428 2633;3212;1034 3571 17999;18000;18001;18002;18003;18004;18005;18006;18007;18008;18009;18010;18011;18012;18013;18014;18015;18016;18017;18018;18019;18020;18021;18022;18023;18024;18025;18026;18027;18028;18029;18030;18031;18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059;18060;18061;18062;18063;18064;18065;18066;18067;18068;18069;18070;18071;18072;18073;18074;18075;18076;18077;18078;18079;18080;18081;18082;18083;18084;18085;18086;18087;18088;18089 18655;18656;18657;18658;18659;18660;18661;18662;18663;18664;18665;18666;18667;18668;18669;18670;18671;18672;18673;18674;18675;18676;18677;18678;18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691;18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717;18718;18719;18720;18721;18722;18723;18724;18725;18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738;18739 18680 84 AVFVPDIYSR SGRLRGTVVGGRQDKAVFVPDIYSRTQSTW GRQDKAVFVPDIYSRTQSTWVDSFFRQNGY K A V S R T 1 1 0 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 10 0 1165.6132 O94874 O94874 242 251 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.0020294 78.334 By MS/MS 2 0.85602 0.81053 NaN 1 Median 0.85602 0.81053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7548200 4169000 3379200 7548200 4169000 3379200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3429 1732 3572 18090;18091 18740;18741 18740 2 AVFWDIK DARMRLMKHDVNLGRAVFWDIKNRLPRSVT KHDVNLGRAVFWDIKNRLPRSVTTVQWENS R A V I K N 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 7 0 877.46979 Q6P2Q9 Q6P2Q9 1152 1158 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.024489 55.441 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1 1.2428 1.1808 16.631 8 Median 1.4626 1.446 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8512 0.91097 13.558 3 0 Median 1.3976 1.28 3.222 2 0 Median 1.1541 1.2079 NaN 1 0 Median 1.3384 1.1543 NaN 1 0 Median 24629000 11156000 13474000 1677800 773670 904090 0 0 0 12188000 5765700 6422800 1153200 471060 682120 9208700 3970000 5238800 401140 175170 225970 3430 3157 3573 18092;18093;18094;18095;18096;18097;18098;18099 18742;18743;18744;18745 18744 4 AVFYTWADPVGSR QSSLSEIEDSLPPGKAVFYTWADPVGSRRL GKAVFYTWADPVGSRRLKWRCRKSHGEVTQ K A V S R R 2 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 2 0 0 13 0 1467.7147 Q96RL7 Q96RL7 2444 2456 VPS13A Vacuolar protein sorting-associated protein 13A yes yes 2 0.001095 59.426 By MS/MS 1 1.0201 1.0318 NaN 1 Median 1.0201 1.0318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3043600 1598800 1444800 3043600 1598800 1444800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3431 3726 3574 18100 18746 18746 1 AVGAQASVGSR PRPRTRSNPEGAEDRAVGAQASVGSRSEGE AEDRAVGAQASVGSRSEGEGEAASADDGSL R A V S R S 3 1 0 0 0 1 0 2 0 0 0 0 0 0 0 2 0 0 0 2 0 0 11 0 1001.5254 M0R0I0;Q9NWV8;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R2I2;J3KQS6;M0QXG9 M0R0I0 38 48 BABAM1 BRISC and BRCA1-A complex member 1 yes no 2 0.0042699 64.04 By MS/MS By MS/MS By matching 1 3 2 1.0066 1.0047 22.422 5 Median 0.98161 1.0047 NaN 1 0 Median 0.93 0.79771 27.726 2 1 Median 1.09 1.1119 10.297 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4058900 1869500 2189300 967850 468170 499680 1942500 924490 1018000 1148500 476890 671630 0 0 0 0 0 0 0 0 0 3432 1427 3575 18101;18102;18103;18104;18105;18106 18747;18748;18749 18747 3 AVGASFPLYEPAK KGKGRDVESVQTPSKAVGASFPLYEPAKMK SKAVGASFPLYEPAKMKTPVQYSQQQNSPQ K A V A K M 3 0 0 0 0 0 1 1 0 0 1 1 0 1 2 1 0 0 1 1 0 0 13 0 1348.7027 P46013 P46013 332 344 MKI67 Antigen KI-67 yes yes 2 5.5866E-05 87.298 By MS/MS 1 0.67367 0.71721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67367 0.71721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43794000 23874000 19920000 0 0 0 0 0 0 43794000 23874000 19920000 0 0 0 0 0 0 0 0 0 3433 2335 3576 18107 18750;18751 18751 2 AVGDGIVLCK RHVIPMNPNTDDLFKAVGDGIVLCKMINLS DDLFKAVGDGIVLCKMINLSVPDTIDERAI K A V C K M 1 0 0 1 1 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1030.5481 P13797;A0A0A0MSQ0;U3KQI3 P13797 159 168 PLS3 Plastin-3 yes no 2 0.00035753 83.206 By matching By MS/MS 1 1 0.91138 0.80734 10.812 2 Median 0.79728 0.74792 NaN 1 0 Median 1.0418 0.87148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27121000 14381000 12740000 12529000 6684100 5844900 14592000 7697100 6895200 0 0 0 0 0 0 0 0 0 0 0 0 3434 1995 3577 18108;18109 18752 18752 1 AVGESVQKPLDYYR KKYSFMAVIHFAGLKAVGESVQKPLDYYRV KAVGESVQKPLDYYRVNLTGTIQLLEIMKA K A V Y R V 1 1 0 1 0 1 1 1 0 0 1 1 0 0 1 1 0 0 2 2 0 0 14 1 1623.8257 Q5QPP1;Q5QPP3;Q5QPP4;Q14376 Q5QPP1 93 106 GALE UDP-glucose 4-epimerase yes no 2;3 2.4896E-06 118.28 By MS/MS By MS/MS By matching 4 3 1 0.85113 0.89581 25.8 8 Median 0.83605 0.8704 4.7918 4 1 Median 1.1003 1.0306 18.013 3 0 Median 0.48495 0.52954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58298000 31296000 27003000 46973000 25632000 21341000 8629900 3929400 4700500 2695600 1734000 961620 0 0 0 0 0 0 0 0 0 3435 2877 3578 18110;18111;18112;18113;18114;18115;18116;18117 18753;18754;18755;18756;18757;18758;18759;18760 18755 8 AVGHPFVIQLGR KQLGSILKTNVRACKAVGHPFVIQLGRIYL ACKAVGHPFVIQLGRIYLDMLNVYKCLSEN K A V G R I 1 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 2 0 0 12 0 1292.7353 O14980 O14980 701 712 XPO1 Exportin-1 yes yes 2;3 4.7244E-06 97.456 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 3 3 2 1.1136 1.046 30.624 14 Median 0.99906 0.99021 3.8152 3 0 Median 1.2043 1.0114 5.6268 2 0 Median 0.92306 0.97932 9.3761 2 0 Median 1.1592 0.98964 12.245 2 1 Median 2.0142 2.0961 41.478 3 0 Median 1.4273 1.159 14.577 2 0 Median 123030000 58371000 64662000 62792000 30946000 31846000 17028000 7639100 9389300 26988000 13284000 13704000 2172900 941470 1231400 8996900 3274600 5722300 5055500 2286700 2768800 3436 1510 3579 18118;18119;18120;18121;18122;18123;18124;18125;18126;18127;18128;18129;18130;18131;18132 18761;18762;18763;18764;18765;18766;18767;18768;18769 18761 9 AVGIVGIER QSLQTNRGPQPGRIRAVGIVGIERKLEEKR QPGRIRAVGIVGIERKLEEKRKETDKNISE R A V E R K 1 1 0 0 0 0 1 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 912.53927 Q86VN1;A0A3B3ISW7 Q86VN1 153 161 VPS36 Vacuolar protein-sorting-associated protein 36 yes no 2 0.0017633 77.923 By matching By matching By MS/MS By matching By matching By matching 1 2 2 1 1 2 1.0364 0.87153 23.003 9 Median 0.75135 0.75223 NaN 1 0 Median 1.0101 0.86563 41.497 2 0 Median 1.0927 1.1394 2.0372 2 0 Median 1.1582 1.0203 NaN 1 0 Median 0.72393 0.7598 NaN 1 0 Median 0.94907 0.78351 15.056 2 0 Median 68776000 32040000 36736000 2694300 1381100 1313200 1775700 944780 830940 57949000 26650000 31299000 728120 321550 406570 2430700 1246400 1184400 3198500 1496400 1702100 3437 3287 3580 18133;18134;18135;18136;18137;18138;18139;18140;18141 18770;18771 18770 2 AVGIWHCGSCMK KYTCSFCGKTKMKRRAVGIWHCGSCMKTVA KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV R A V M K T 1 0 0 0 2 0 0 2 1 1 0 1 1 0 0 1 0 1 0 1 0 0 12 0 1404.6101 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6 C9J4Z3 27 38 RPL37A 60S ribosomal protein L37a yes no 2;3 3.3098E-30 208.03 By MS/MS By MS/MS By matching 1 4 1 1.2127 1.0238 12.459 6 Median 1.1634 1.0707 NaN 1 0 Median 1.2127 0.99734 2.9347 4 0 Median 1.3462 1.3605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96146000 42803000 53343000 3332700 1556900 1775800 91969000 40944000 51025000 844540 301760 542780 0 0 0 0 0 0 0 0 0 3438 676 3581;3582 18142;18143;18144;18145;18146;18147 18772;18773;18774;18775;18776;18777;18778;18779 18774 245 8 AVGPEITK RVRYMVADKFTELQKAVGPEITKTDLVPAF KFTELQKAVGPEITKTDLVPAFQNLMKDCE K A V T K T 1 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 1 0 0 1 0 0 8 0 813.45962 P30153;B3KQV6;C9J9C1 P30153 273 280 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.023904 43.808 By MS/MS By MS/MS By matching 2 2 1 0.91195 0.8787 6.1934 4 Median 0.87897 0.84018 0 2 0 Median 1.0912 0.91899 NaN 1 0 Median 0.94617 0.94772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18868000 10188000 8679400 10845000 6354300 4490400 7393800 3517000 3876800 629220 316920 312310 0 0 0 0 0 0 0 0 0 3439 2190 3583 18148;18149;18150;18151;18152 18780;18781;18782;18783 18782 4 AVGPHQFLGDQEAIQAAIK PTGVPILLELDENLRAVGPHQFLGDQEAIQ HQFLGDQEAIQAAIKKVEDQGKVKQAKK__ R A V I K K 4 0 0 1 0 3 1 2 1 2 1 1 0 1 1 0 0 0 0 1 0 0 19 0 1992.0429 P07738 P07738 228 246 BPGM Bisphosphoglycerate mutase yes yes 3 6.4386E-06 49.463 By MS/MS 1 0.91487 0.85061 NaN 1 Median 0.91487 0.85061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6333000 3256300 3076600 6333000 3256300 3076600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3440 1890 3584 18153 18784 18784 1 AVGPSSTQLYMVR EKDPKSGFDIKVPRRAVGPSSTQLYMVRTM RRAVGPSSTQLYMVRTMLESLIADKSGSKK R A V V R T 1 1 0 0 0 1 0 1 0 0 1 0 1 0 1 2 1 0 1 2 0 0 13 0 1407.718 E7EVJ5;H7C229;E7EW33;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 551 563 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 1 no no 2 1.4639E-05 95.573 By matching By matching By MS/MS By MS/MS 1 1 1 3 1.0087 0.88392 36.077 6 Median 0.89937 0.8502 NaN 1 0 Median 1.0317 0.88069 NaN 1 0 Median 0.98623 1.0842 NaN 1 0 Median 1.0453 0.88716 48.069 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40319000 21400000 18919000 4863300 2470800 2392500 3116500 1556200 1560300 19408000 9956200 9451700 12931000 7416400 5514800 0 0 0 0 0 0 3441 3224;897 3585;3586 18154;18155;18156;18157;18158;18159 18785;18786;18787;18788 18787 326 4 AVGPTAEADK DYEETELISTTANYRAVGPTAEADKSAAEK TANYRAVGPTAEADKSAAEKRRQLIQESKF R A V D K S 3 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 10 0 957.47673 Q13123;E7EQZ7;D6REL4 Q13123 128 137 IK Protein Red yes no 2 0.0037749 55.549 By MS/MS 1 0.98099 1.0447 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98099 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1571500 740950 830510 0 0 0 0 0 0 1571500 740950 830510 0 0 0 0 0 0 0 0 0 3442 2787 3587 18160 18789;18790 18790 2 AVGRLEAVSHTSDMHR ______________________________ VGRLEAVSHTSDMHRGYADSPSKAGAAPYV R A V H R G 2 2 0 1 0 0 1 1 2 0 1 0 1 0 0 2 1 0 0 2 0 0 16 1 1764.8689 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0S3;Q5T0R8 Q01518 14 29 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 4 0.0023688 29.341 By MS/MS 2 1.0018 1.0495 7.2967 2 Median 1.0018 1.0495 7.2967 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3974100 1696800 2277300 3974100 1696800 2277300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3443 2686 3588 18161;18162 18791;18792 18792 2 AVGSISSTAFDIR GTDPRSREVIRNACKAVGSISSTAFDIRFN CKAVGSISSTAFDIRFNPDIFSPGVRFPES K A V I R F 2 1 0 1 0 0 0 1 0 2 0 0 0 1 0 3 1 0 0 1 0 0 13 0 1322.683 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 704 716 CLUH Clustered mitochondria protein homolog yes no 2 1.3011E-06 129.16 By MS/MS By matching 2 1 1.1572 1.0861 16.263 3 Plateau 1.0994 1.0583 3.6629 2 0 Median NaN NaN NaN 0 0 Median 0.76952 0.80139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29157000 14595000 14562000 24917000 12326000 12591000 0 0 0 4240100 2268900 1971200 0 0 0 0 0 0 0 0 0 3444 1651 3589 18163;18164;18165 18793;18794 18793 2 AVGSPATATPDLVSMATTQGVR GSAPAQVVHTQPPPRAVGSPATATPDLVSM ATPDLVSMATTQGVRAVTSVTASAVVTTNL R A V V R A 4 1 0 1 0 1 0 2 0 0 1 0 1 0 2 2 4 0 0 3 0 0 22 0 2129.0787 Q96L91 Q96L91 2683 2704 EP400 E1A-binding protein p400 yes yes 2 8.7222E-07 47.666 By MS/MS 1 0.53524 0.59489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53524 0.59489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2251500 1558000 693470 0 0 0 0 0 0 2251500 1558000 693470 0 0 0 0 0 0 0 0 0 3445 3700 3590 18166 18795 18795 1 AVGTPGGGGGGAVPGISAMSR RGDKEAPPPVLLTPKAVGTPGGGGGGAVPG GGGGGAVPGISAMSRGDLSQRAKDLSKRSF K A V S R G 3 1 0 0 0 0 0 8 0 1 0 0 1 0 2 2 1 0 0 2 0 0 21 0 1754.8734 P48634 P48634 1350 1370 PRRC2A Protein PRRC2A yes yes 2 4.8906E-17 98.439 By MS/MS By matching 1 1 0.78388 0.7967 22.409 2 Median 0.99465 0.9335 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61776 0.67995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22014000 10646000 11368000 16488000 7610300 8877200 0 0 0 5526500 3035500 2491000 0 0 0 0 0 0 0 0 0 3446 2363 3591 18167;18168 18796;18797 18797 2 AVGTQTLSGAGLLK DPDVREFLEKEELPRAVGTQTLSGAGLLKM RAVGTQTLSGAGLLKMFNKATDAVSKMTIK R A V L K M 2 0 0 0 0 1 0 3 0 0 3 1 0 0 0 1 2 0 0 1 0 0 14 0 1314.7507 Q13596;H0YK42 Q13596 273 286 SNX1 Sorting nexin-1 yes no 2 2.396E-05 145.34 By MS/MS By MS/MS By matching 1 2 1 1.0744 0.94849 13.77 4 Median 0.99612 0.93337 NaN 1 0 Median 1.0744 0.94849 0.53364 2 0 Median 1.1847 1.2419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23605000 11292000 12313000 14340000 7176300 7163400 3670300 1655400 2015000 5594600 2460500 3134100 0 0 0 0 0 0 0 0 0 3447 2829 3592 18169;18170;18171;18172 18798;18799 18798 2 AVGVPALGFSPMNR EPEIMPAATDNRYIRAVGVPALGFSPMNRT RAVGVPALGFSPMNRTPVLLHDHDERLHEA R A V N R T 2 1 1 0 0 0 0 2 0 0 1 0 1 1 2 1 0 0 0 2 0 0 14 0 1414.7391 A0A1B0GU86;C9JMV9;A0A1B0GW23;Q03154 A0A1B0GU86 319 332 ABHD14A-ACY1;ACY1 Aminoacylase-1 yes no 2 0.0005375 67.726 By MS/MS By matching 2 1 0.72505 0.71442 79.437 3 Median 0.58918 0.58736 27.694 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1858 2.2285 NaN 1 0 Median NaN NaN NaN 0 0 Median 5027600 2331300 2696300 3038500 1927200 1111400 0 0 0 0 0 0 0 0 0 1989100 404140 1584900 0 0 0 3448 322 3593 18173;18174;18175 18800;18801;18802 18802 3 AVGWNELEGR RLSAEERDQLLPNLRAVGWNELEGRDAIFK LPNLRAVGWNELEGRDAIFKQFHFKDFNRA R A V G R D 1 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 10 0 1129.5516 P61457 P61457 22 31 PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes yes 2 0.00040727 88.948 By MS/MS By MS/MS By matching 1 2 1 1.168 1.0631 7.0976 4 Median 1.158 1.1209 NaN 1 0 Median 1.1986 0.99463 6.0679 2 0 Median 1.089 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81175000 37427000 43748000 43770000 20416000 23353000 35522000 16229000 19293000 1883000 781460 1101600 0 0 0 0 0 0 0 0 0 3449 2558 3594 18176;18177;18178;18179 18803;18804;18805;18806;18807;18808;18809 18807 7 AVHAHVNLGYTK MKPGGPALWGDAFKRAVHAHVNLGYTKLVG FKRAVHAHVNLGYTKLVGVFHTEYGALNRV R A V T K L 2 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 1 0 1 2 0 0 12 0 1308.6939 Q9UFN0 Q9UFN0 168 179 NIPSNAP3A Protein NipSnap homolog 3A yes yes 2;3 6.605E-09 103.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1.0965 1.0899 17.717 8 Median 1.0248 0.94937 2.0888 2 0 Median 1.5803 1.3209 11.421 2 0 Median 1.033 0.98151 8.9024 2 0 Median 1.7061 1.4137 NaN 1 0 Median 1.106 1.1365 NaN 1 0 Median NaN NaN NaN 0 0 Median 128010000 53005000 75001000 79801000 37037000 42764000 32027000 8828300 23199000 10926000 5315900 5610500 4052600 1338700 2714000 1199600 485510 714050 0 0 0 3450 4259 3595 18180;18181;18182;18183;18184;18185;18186;18187;18188 18810;18811;18812;18813;18814;18815;18816;18817;18818;18819;18820;18821 18819 12 AVHEQLAALSQAPVNKPK EERATRLAELQEQLKAVHEQLAALSQAPVN EQLAALSQAPVNKPKKKKEKKEKEKKKKDK K A V P K K 4 0 1 0 0 2 1 0 1 0 2 2 0 0 2 1 0 0 0 2 0 0 18 1 1900.053 Q15059 Q15059 472 489 BRD3 Bromodomain-containing protein 3 yes yes 3;4 1.4672E-06 69.522 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 0.53892 0.61469 27.41 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50107 0.57157 7.0538 4 2 Median 0.94104 0.9193 18.653 3 0 Median 0.51782 0.57953 NaN 1 0 Median 1.0704 0.96632 NaN 1 0 Median 89181000 57704000 31477000 0 0 0 0 0 0 59254000 39242000 20012000 11075000 5563100 5511700 16949000 11998000 4950400 1903000 900450 1002600 3451 2923 3596 18189;18190;18191;18192;18193;18194;18195;18196;18197 18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832 18822 11 AVHEQLAALSQGPISKPK EERAHRLAELQEQLRAVHEQLAALSQGPIS EQLAALSQGPISKPKRKREKKEKKKKRKAE R A V P K R 3 0 0 0 0 2 1 1 1 1 2 2 0 0 2 2 0 0 0 1 0 0 18 1 1873.0421 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;A0A0G2JHN8;A0A140T9I1 H0Y6K2 535 552 BRD2 Bromodomain-containing protein 2 yes no 3;4 2.2189E-06 59.585 By MS/MS By MS/MS By MS/MS 3 3 1 0.90743 0.96305 12.661 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82963 0.94797 1.851 2 0 Median NaN NaN NaN 0 0 Median 0.95483 1.0687 13.096 3 0 Median 0.96901 0.87467 NaN 1 0 Median 44050000 23082000 20968000 0 0 0 0 0 0 13837000 7802000 6035000 0 0 0 28228000 14253000 13974000 1985500 1026900 958560 3452 279 3597 18198;18199;18200;18201;18202;18203;18204 18833;18834;18835;18836;18837;18838;18839;18840;18841 18836 9 AVHEQLAALSQPQQNKPK EERAQRLAELQEQLKAVHEQLAALSQPQQN EQLAALSQPQQNKPKKKEKDKKEKKKEKHK K A V P K K 3 0 1 0 0 4 1 0 1 0 2 2 0 0 2 1 0 0 0 1 0 0 18 1 1986.0647 O60885;M0QZD9 O60885 520 537 BRD4 Bromodomain-containing protein 4 yes no 3;4 7.1831E-05 42.913 By MS/MS By MS/MS 2 1 0.84588 0.789 55.593 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6576 0.75795 78.552 2 1 Median 0.84588 0.789 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9303700 5143900 4159800 0 0 0 0 0 0 8505800 4678900 3827000 797900 465030 332870 0 0 0 0 0 0 3453 1638 3598 18205;18206;18207 18842;18843;18844 18842 3 AVHGVEETSSEVKPPNE GCGTAAFPYPMMHGRAVHGVEETSSEVKPP HGVEETSSEVKPPNE_______________ R A V N E - 1 0 1 0 0 0 4 1 1 0 0 1 0 0 2 2 1 0 0 3 0 0 17 1 1807.8588 Q7Z6I8 Q7Z6I8 172 188 C5orf24 UPF0461 protein C5orf24 yes yes 3 6.7576E-06 62.377 By MS/MS 1 0.79281 0.65603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79281 0.65603 NaN 1 0 Median 4598700 3262800 1335900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4598700 3262800 1335900 3454 3252 3599 18208 18845;18846 18846 2 AVHHLHYIER KATDRMDAFRKAKNRAVHHLHYIERYEDHT KAKNRAVHHLHYIERYEDHTIFHDISLRFK R A V E R Y 1 1 0 0 0 0 1 0 3 1 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1273.668 P82675 P82675 275 284 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2;3 0.0035277 40.589 By MS/MS By MS/MS By matching 2 1 1 1.4877 1.3 12.425 4 Median NaN NaN NaN 0 0 Median 1.4877 1.3 4.5722 2 0 Median 1.1325 1.1593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7643 1.5553 NaN 1 0 Median 2921700 1159600 1762200 0 0 0 2225700 861600 1364100 560970 253240 307730 0 0 0 0 0 0 135060 44733 90330 3455 2653 3600 18209;18210;18211;18212 18847;18848;18849 18848 3 AVHNSVAAQLTGVAGH NLCGKRGHAFAQCPKAVHNSVAAQLTGVAG VHNSVAAQLTGVAGH_______________ K A V G H - 4 0 1 0 0 1 0 2 2 0 1 0 0 0 0 1 1 0 0 3 0 0 16 0 1530.7903 Q9NUD5 Q9NUD5 388 403 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 3 4.653E-08 83.499 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9209500 0 0 0 0 0 0 0 0 3063400 0 0 6146100 0 0 0 0 0 0 0 0 3456 4114 3601 18213;18214 18850;18851 18850 2 AVHSNPGDPALWSLLSR ALQGRSVAVQKQISKAVHSNPGDPALWSLL HSNPGDPALWSLLSRVVAQYAQRNAKGGVV K A V S R V 2 1 1 1 0 0 0 1 1 0 3 0 0 0 2 3 0 1 0 1 0 0 17 0 1818.9377 Q6PGP7 Q6PGP7 1185 1201 TTC37 Tetratricopeptide repeat protein 37 yes yes 3 0.00034702 50.608 By MS/MS 1 0.40663 0.38202 NaN 1 Median 0.40663 0.38202 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9783500 6855800 2927600 9783500 6855800 2927600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3457 3169 3602 18215 18852 18852 1 AVHTNYHAALR RERGADLVVIEGMGRAVHTNYHAALRCESL GMGRAVHTNYHAALRCESLKLAVIKNAWLA R A V L R C 3 1 1 0 0 0 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 0 11 0 1251.6473 E9PHT6;A0A494C169;Q9NVE7 E9PHT6 690 700 PANK4 Pantothenate kinase 4 yes no 3 0.001135 48.44 By matching By MS/MS 1 1 1.1244 1.0616 4.3715 2 Median 1.0952 1.095 NaN 1 0 Median 1.1544 1.0293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579500 714200 865310 465530 216320 249220 1114000 497880 616090 0 0 0 0 0 0 0 0 0 0 0 0 3458 466 3603 18216;18217 18853 18853 1 AVHTVDFTADKYHVVSGADDYTVK ISGRAPLRQFEGHTKAVHTVDFTADKYHVV DKYHVVSGADDYTVKLWDIPNSKEILTFKE K A V V K L 3 0 0 4 0 0 0 1 2 0 0 2 0 1 0 1 3 0 2 5 0 0 24 1 2637.2711 Q8TED0;H0Y8P4 Q8TED0 124 147 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 4 0.032407 19.755 By MS/MS 1 0.60324 0.63293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60324 0.63293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2864800 1140800 1724000 0 0 0 0 0 0 2864800 1140800 1724000 0 0 0 0 0 0 0 0 0 3459 1163 3604 18218 18854 18854 1 AVHVESVQPLSLENLALR ARYHFEDVGGVQGARAVHVESVQPLSLENL VESVQPLSLENLALRGRCQEAWVLSGKQQI R A V L R G 2 1 1 0 0 1 2 0 1 0 4 0 0 0 1 2 0 0 0 3 0 0 18 0 1974.0898 Q9HD47 Q9HD47 79 96 RANGRF Ran guanine nucleotide release factor yes yes 3 0.020614 26.474 By MS/MS 1 0.83012 0.78355 NaN 1 Median 0.83012 0.78355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5275200 2983300 2291900 5275200 2983300 2291900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3460 4038 3605 18219 18855 18855 1 AVIDLNNR GNVYVKFRREEDAEKAVIDLNNRWFNGQPI REEDAEKAVIDLNNRWFNGQPIHAELSPVT K A V N R W 1 1 2 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 913.49813 P0DN76;Q01081 P0DN76 126 133 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.0022975 134.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 2 1.2023 1.0297 12.286 9 Median NaN NaN NaN 0 0 Median 1.3058 1.0861 NaN 1 0 Median 1.1719 1.1296 3.1544 2 1 Median 1.0771 0.89604 19.659 2 1 Median 0.94058 0.94685 10.648 2 1 Median 1.2874 1.0271 4.526 2 0 Median 353300000 164130000 189170000 0 0 0 7291200 3026600 4264600 121150000 55053000 66094000 127010000 55552000 71456000 55425000 30413000 25012000 42425000 20085000 22340000 3461 1930 3606 18220;18221;18222;18223;18224;18225;18226;18227;18228;18229 18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870 18858 15 AVIEHNLLSASK HQKATTADGSSILDRAVIEHNLLSASKLYN LDRAVIEHNLLSASKLYNNITFEELGALLE R A V S K L 2 0 1 0 0 0 1 0 1 1 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1280.7089 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 303 314 COPS4 COP9 signalosome complex subunit 4 yes no 2;3 3.8652E-06 127.83 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1.2858 1.1107 21.876 12 Median 1.1763 1.0903 9.4417 3 0 Median 1.2718 1.0912 33.965 3 0 Median 1.3 1.3423 31.514 3 0 Plateau 1.3136 1.1123 7.3508 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95065000 42303000 52762000 40640000 19188000 21451000 11912000 5085000 6826900 35603000 15206000 20396000 6910900 2823300 4087700 0 0 0 0 0 0 3462 813 3607 18230;18231;18232;18233;18234;18235;18236;18237;18238;18239;18240;18241 18871;18872;18873;18874;18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886 18871 16 AVIELLEK VRGDAHECFVSPVAKAVIELLEKSVGVNLD FVSPVAKAVIELLEKSVGVNLDGKKILVVG K A V E K S 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 913.54843 A0A087WVM4;B7ZM99;Q6UB35;H0Y327;Q5JYA8;Q5JYA3 A0A087WVM4 140 147 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0052175 77.058 By MS/MS By matching By MS/MS 1 1 3 1.1357 1.095 9.681 5 Median 1.3106 1.281 NaN 1 0 Median 1.4226 1.2518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0638 1.095 3.7598 3 0 Plateau NaN NaN NaN 0 0 Median 15555000 6960800 8594400 4635100 2107200 2527900 1836300 769440 1066800 0 0 0 0 0 0 9084000 4084200 4999800 0 0 0 3463 43 3608 18242;18243;18244;18245;18246 18887;18888;18889;18890;18891;18892 18887 6 AVIETADR IKKYAEVLRYVDSSKAVIETADRAKLQPIA RYVDSSKAVIETADRAKLQPIALSCVLNIG K A V D R A 2 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 8 0 873.4556 Q08752 Q08752 258 265 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 2 0.05728 49.358 By MS/MS 1 1.2669 1.0867 NaN 1 Median NaN NaN NaN 0 0 Median 1.2669 1.0867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1202000 530780 671180 0 0 0 1202000 530780 671180 0 0 0 0 0 0 0 0 0 0 0 0 3464 2742 3609 18247 18893 18893 1 AVIFCLSADKK VRKCSTPEEIKKRKKAVIFCLSADKKCIIV KRKKAVIFCLSADKKCIIVEEGKEILVGDV K A V K K C 2 0 0 1 1 0 0 0 0 1 1 2 0 1 0 1 0 0 0 1 0 0 11 1 1250.6693 P60981;F6RFD5 P60981 35 45 DSTN Destrin yes no 2 0.0014741 80.239 By MS/MS 1 0.077741 0.068774 NaN 1 Median NaN NaN NaN 0 0 Median 0.077741 0.068774 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23806000 21460000 2346100 0 0 0 23806000 21460000 2346100 0 0 0 0 0 0 0 0 0 0 0 0 3465 2533 3610 18248 18894 18894 1 AVIGIGIEEEDRK CDRAGSVATCQAVMRAVIGIGIEEEDRKHT MRAVIGIGIEEEDRKHTWMEDADSCVAHNA R A V R K H 1 1 0 1 0 0 3 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 13 1 1427.762 O94906 O94906 528 540 PRPF6 Pre-mRNA-processing factor 6 yes yes 2;3 2.2815E-11 123.64 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1.2147 1.1111 15.822 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95402 1.0799 NaN 1 0 Median 1.2537 1.2049 19.114 3 1 Median 1.2147 1.3358 NaN 1 0 Median 1.1855 1.0339 10.19 2 0 Median 58001000 26502000 31499000 0 0 0 0 0 0 23421000 12266000 11155000 24862000 9958500 14904000 6662200 3114000 3548200 3056300 1164000 1892300 3466 1735 3611 18249;18250;18251;18252;18253;18254;18255;18256 18895;18896;18897;18898;18899;18900;18901;18902;18903;18904 18896 10 AVIGMTAGATGAFVGTPAEVALIR RLTGADGTPPGFLLKAVIGMTAGATGAFVG TGAFVGTPAEVALIRMTADGRLPADQRRGY K A V I R M 6 1 0 0 0 0 1 4 0 2 1 0 1 1 1 0 3 0 0 3 0 0 24 0 2272.2249 I3L1P8;Q02978 I3L1P8 112 135 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 2.7432E-07 45.434 By MS/MS 1 0.87392 0.84834 NaN 1 Median 0.87392 0.84834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1680500 915750 764740 1680500 915750 764740 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3467 1277 3612 18257 18905 18905 425 1 AVIHYRDDETMYVESK KYFQFQEEGKEGENRAVIHYRDDETMYVES VIHYRDDETMYVESKKDRVTVVFSTVFKDD R A V S K K 1 1 0 2 0 0 2 0 1 1 0 1 1 0 0 1 1 0 2 2 0 0 16 1 1954.9095 O15144 O15144 142 157 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 3 7.3284E-06 83.692 By matching By MS/MS By MS/MS 1 1 2 1.2261 1.1851 9.6219 4 Median 1.1717 1.16 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92378 1.0035 NaN 1 0 Median 1.3018 1.2285 2.0558 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17749000 8553400 9195200 1715700 748860 966800 0 0 0 8190700 4353600 3837100 7842200 3450900 4391300 0 0 0 0 0 0 3468 1526 3613;3614 18258;18259;18260;18261 18906;18907;18908;18909;18910;18911 18910 492 6 AVILELKR DELAQKLKPLGEQERAVILELKRAECERRG PLGEQERAVILELKRAECERRGLPFDGRIR R A V K R A 1 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 1 940.60695 P52888;K7EP46 P52888 311 318 THOP1 Thimet oligopeptidase yes no 2 0.016926 56.011 By MS/MS By MS/MS 1 1 1.0985 1.1127 16.093 2 Median 1.2186 1.2468 NaN 1 0 Median 0.99024 0.99302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520600 1426100 2094400 2336300 933750 1402500 1184300 492390 691940 0 0 0 0 0 0 0 0 0 0 0 0 3469 2460 3615 18262;18263 18912;18913 18912 2 AVILGPPGSGK ______________________________ KLLRAVILGPPGSGKGTVCQRIAQNFGLQH R A V G K G 1 0 0 0 0 0 0 3 0 1 1 1 0 0 2 1 0 0 0 1 0 0 11 0 994.58113 P27144 P27144 8 18 AK4 Adenylate kinase 4, mitochondrial yes yes 2 0.02098 55.549 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3470 2151 3616 18264 18914 18914 1 AVILIGGPQK ______________________________ ______________________________ K A V Q K G 1 0 0 0 0 1 0 2 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 994.61752 A0A087WUI8;Q96IJ6;C9J255;F8WD54 A0A087WUI8 4 13 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 2 0.0013076 66.682 By MS/MS 1 0.49553 0.42541 NaN 1 Median NaN NaN NaN 0 0 Median 0.49553 0.42541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3835600 2437100 1398400 0 0 0 3835600 2437100 1398400 0 0 0 0 0 0 0 0 0 0 0 0 3471 31 3617 18265 18915 18915 1 AVIMGAPGSGK ______________________________ RLLRAVIMGAPGSGKGTVSSRITTHFELKH R A V G K G 2 0 0 0 0 0 0 3 0 1 0 1 1 0 1 1 0 0 0 1 0 0 11 0 986.5219 Q9UIJ7 Q9UIJ7 10 20 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.0003569 71.349 By MS/MS By MS/MS 1 2 1.0947 0.9357 48.153 3 Median 0.506 0.47336 NaN 1 0 Median 1.2403 1.0596 17.582 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5559600 3143000 2416600 3725400 2374900 1350600 1834200 768110 1066000 0 0 0 0 0 0 0 0 0 0 0 0 3472 4291 3618 18266;18267;18268 18916;18917;18918 18917 3 AVINSAGYK LYENKAAYERQVPPRAVINSAGYKILTSVD RQVPPRAVINSAGYKILTSVDQYLELIGNS R A V Y K I 2 0 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 9 0 921.49198 Q96TA1 Q96TA1 115 123 FAM129B Niban-like protein 1 yes yes 2 0.0061228 55.531 By MS/MS By MS/MS 1 1 1.239 1.1668 8.1626 2 Median 1.2315 1.2361 NaN 1 1 Median 1.2466 1.1013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3622000 1645800 1976200 1375300 539240 836040 2246700 1106600 1140200 0 0 0 0 0 0 0 0 0 0 0 0 3473 3743 3619 18269;18270 18919;18920;18921 18921 3 AVIPEAVVEVLDPK FWDDVYGFKMSCMKKAVIPEAVVEVLDPKT KAVIPEAVVEVLDPKTLISEPCGIKHIDCH K A V P K T 2 0 0 1 0 0 2 0 0 1 1 1 0 0 2 0 0 0 0 4 0 0 14 0 1477.8392 O60678 O60678 397 410 PRMT3 Protein arginine N-methyltransferase 3 yes yes 2 0.009545 34.532 By matching By MS/MS 1 1 0.90547 0.82882 13.867 2 Median 0.94286 0.91421 NaN 1 0 Median 0.86956 0.75141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2705700 1429200 1276600 827300 424690 402610 1878400 1004500 873940 0 0 0 0 0 0 0 0 0 0 0 0 3474 1625 3620 18271;18272 18922;18923 18923 2 AVIQGLETLR REEKLSQDEIVLGTKAVIQGLETLRGEHRA VLGTKAVIQGLETLRGEHRALLAPLVAPEA K A V L R G 1 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1098.6397 Q9H0B6;E9PQ02;A8MX29;E9PI24;E9PP09;C9JHT2;E9PM83 Q9H0B6 23 32 KLC2 Kinesin light chain 2 yes no 2 0.00047649 90.657 By MS/MS By MS/MS By MS/MS 1 1 1 1.3084 1.6613 45.558 3 Plateau NaN NaN NaN 0 0 Median 1.2949 1.1238 NaN 1 0 Median 2.3398 2.456 NaN 1 0 Median 1.3084 1.1079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8344200 2940500 5403700 0 0 0 3108500 1373700 1734800 4809600 1372600 3436900 426160 194180 231990 0 0 0 0 0 0 3475 3922 3621 18273;18274;18275 18924;18925;18926 18924 3 AVIQGLETLRGEHR REEKLSQDEIVLGTKAVIQGLETLRGEHRA KAVIQGLETLRGEHRALLAPLVAPEAGEAE K A V H R A 1 2 0 0 0 1 2 2 1 1 2 0 0 0 0 0 1 0 0 1 0 0 14 1 1577.8638 Q9H0B6;E9PQ02;A8MX29;E9PI24;E9PP09;C9JHT2;E9PM83 Q9H0B6 23 36 KLC2 Kinesin light chain 2 yes no 3 0.013443 35.204 By MS/MS 3 1.1737 1.1797 21.117 2 Median 1.1737 1.1797 21.117 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10835000 3922000 6912900 10835000 3922000 6912900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3476 3922 3622 18276;18277;18278 18927;18928;18929 18927 3 AVIQVSQIVAR VTKEAFDRSFEVNLRAVIQVSQIVARGLIA VNLRAVIQVSQIVARGLIARGVPGAIVNVS R A V A R G 2 1 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1182.7085 J3KS22;Q7Z4W1;J3QS36;J3KRZ4;J3QS45;J3KSZ5;J3QL34 J3KS22 108 118 DCXR L-xylulose reductase yes no 2 1.6602E-05 156.51 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.1264 1.0754 37.371 7 Median 0.89547 0.86045 23.67 2 0 Median 1.7251 1.4597 4.3042 2 0 Median 1.1264 1.0754 NaN 1 0 Median 2.0285 1.6745 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7638 0.62278 NaN 1 0 Median 108750000 51489000 57260000 91265000 44852000 46413000 12354000 4160400 8193300 3757000 1907900 1849100 938320 315530 622790 0 0 0 435750 253160 182590 3477 1330 3623 18279;18280;18281;18282;18283;18284;18285 18930;18931;18932;18933;18934;18935;18936 18931 7 AVIVKPVR EGTQEKQELEEEQRRAVIVKPVRSCPEAPT LEEEQRRAVIVKPVRSCPEAPTSDTASDSE R A V V R S 1 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 3 0 0 8 1 880.58582 Q01664 Q01664 295 302 TFAP4 Transcription factor AP-4 yes yes 2 0.037772 64.776 By MS/MS 1 0.77177 0.87662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77177 0.87662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1128400 634530 493870 0 0 0 0 0 0 1128400 634530 493870 0 0 0 0 0 0 0 0 0 3478 2690 3624 18286 18937 18937 1 AVIVLNEGIK VHGFVKDKTGKPISKAVIVLNEGIKVQTKE KPISKAVIVLNEGIKVQTKEGGYFHVLLAP K A V I K V 1 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1054.6386 O75976 O75976 1230 1239 CPD Carboxypeptidase D yes yes 2 0.00039551 91.069 By MS/MS By MS/MS 1 1 1.0928 1.0108 13.09 2 Median 0.95444 0.92147 NaN 1 0 Median 1.2511 1.1089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22294000 10494000 11800000 13989000 6970400 7018500 8305100 3523800 4781300 0 0 0 0 0 0 0 0 0 0 0 0 3479 1714 3625 18287;18288 18938;18939 18939 2 AVIWPQYVK YYGLGLSNEIGAIEKAVIWPQYVKDRIHST IGAIEKAVIWPQYVKDRIHSTYMYLAGSIG K A V V K D 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 0 0 9 0 1102.6175 Q9H3K2 Q9H3K2 113 121 GHITM Growth hormone-inducible transmembrane protein yes yes 2 0.0024179 72.138 By MS/MS By MS/MS By MS/MS 1 1 1 0.96975 0.86212 12.95 3 Median 0.83201 0.83442 NaN 1 0 Median 0.96975 0.86212 NaN 1 0 Median 0.98736 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36172000 19589000 16583000 15518000 8789500 6728500 13904000 7279800 6624600 6749400 3519900 3229500 0 0 0 0 0 0 0 0 0 3480 3954 3626 18289;18290;18291 18940;18941;18942;18943;18944;18945;18946;18947 18941 8 AVIYNPATQADWTAK RTGLEDPERYLFVDRAVIYNPATQADWTAK AVIYNPATQADWTAKKLVWIPSERHGFEAA R A V A K K 4 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 1 1 0 0 15 0 1647.8257 P35580;E7ERA5 P35580 19 33 MYH10 Myosin-10 yes no 2 2.7542E-09 100.55 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.9222 0.88291 24.001 3 Median 0.9222 0.88291 NaN 1 0 Median 1.0654 0.9444 NaN 1 0 Median 0.549 0.60503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63732000 34590000 29142000 38888000 19688000 19201000 7012900 3317500 3695400 17460000 11409000 6050400 0 0 0 0 0 0 371070 175440 195630 3481 2245 3627 18292;18293;18294;18295 18948;18949;18950;18951;18952;18953;18954;18955 18948 8 AVIYNPATQADWTAKK RTGLEDPERYLFVDRAVIYNPATQADWTAK VIYNPATQADWTAKKLVWIPSERHGFEAAS R A V K K L 4 0 1 1 0 1 0 0 0 1 0 2 0 0 1 0 2 1 1 1 0 0 16 1 1775.9206 P35580;E7ERA5 P35580 19 34 MYH10 Myosin-10 yes no 3 3.1776E-05 53.777 By MS/MS By MS/MS 1 1 1.0966 1.1513 19.057 2 Median 1.3822 1.3173 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87001 1.0061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27222000 12634000 14588000 18637000 7830500 10806000 0 0 0 8585300 4803200 3782100 0 0 0 0 0 0 0 0 0 3482 2245 3628 18296;18297 18956;18957 18956 2 AVKDELLGEKPEVK YFKKHEKRMSKDEERAVKDELLGEKPEVKQ RAVKDELLGEKPEVKQKWASRLLAKLRKDI R A V V K Q 1 0 0 1 0 0 3 1 0 0 2 3 0 0 1 0 0 0 0 2 0 0 14 2 1553.8665 A0A286YEX4;P08651 A0A286YEX4 78 91 NFIC Nuclear factor 1 C-type yes no 3 0.00097316 40.025 By MS/MS By MS/MS 2 3 0.83822 0.89708 22.522 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75941 0.89403 0.82321 2 0 Median 0.93326 0.89708 30.574 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25039000 13787000 11252000 0 0 0 0 0 0 13395000 8751500 4643200 11644000 5035400 6609000 0 0 0 0 0 0 3483 350 3629 18298;18299;18300;18301;18302 18958;18959;18960 18960 3 AVKDELLSEKPEVK YFKKHEKRMSKEEERAVKDELLSEKPEVKQ RAVKDELLSEKPEVKQKWASRLLAKLRKDI R A V V K Q 1 0 0 1 0 0 3 0 0 0 2 3 0 0 1 1 0 0 0 2 0 0 14 2 1583.877 A0A590UJ82;A0A590UK73;B1AKN6;B1AKN7;B1AKN5;A0A590UK09;B1AKN8;Q12857;S4R3K4 A0A590UJ82 55 68 NFIA Nuclear factor 1;Nuclear factor 1 A-type yes no 3;4 0.00032077 53.377 By MS/MS By matching 2 1 0.7956 0.81015 7.3135 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65108 0.76932 NaN 1 0 Median 0.9722 0.85315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7916400 3983700 3932700 0 0 0 0 0 0 4854100 2535200 2318900 3062300 1448500 1613800 0 0 0 0 0 0 3484 483 3630 18303;18304;18305 18961;18962;18963 18962 3 AVKEEGQDPDEIGIELEATSK DTGGNKSVLMERLKKAVKEEGQDPDEIGIE QDPDEIGIELEATSKKSAKRCVKGLKMEEE K A V S K K 2 0 0 2 0 1 5 2 0 2 1 2 0 0 1 1 1 0 0 1 0 0 21 1 2257.0962 Q14151 Q14151 63 83 SAFB2 Scaffold attachment factor B2 yes yes 3 8.1481E-09 53.033 By MS/MS By matching 1 1 0.90568 1.0295 6.7996 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85079 0.98116 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96412 1.0802 NaN 1 0 Median NaN NaN NaN 0 0 Median 13468000 6862700 6605000 0 0 0 0 0 0 8196100 4313000 3883100 0 0 0 5271600 2549700 2721900 0 0 0 3485 2859 3631 18306;18307 18964 18964 1 AVKPEPTNSSVEVSPDIYQQVR QAINQQFLNHPPIPRAVKPEPTNSSVEVSP NSSVEVSPDIYQQVRDELKRASVSQAVFAR R A V V R D 1 1 1 1 0 2 2 0 0 1 0 1 0 0 3 3 1 0 1 4 0 0 22 1 2442.2391 C9JR56;Q9UPW6 C9JR56 289 310 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 yes no 3 3.9783E-12 62.684 By MS/MS By MS/MS 1 1 0.60745 0.63015 10.315 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51696 0.58582 NaN 1 0 Median 0.71378 0.67783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14726000 9106800 5619100 0 0 0 0 0 0 13031000 8112600 4918100 1695300 994290 701030 0 0 0 0 0 0 3486 719 3632 18308;18309 18965;18966;18967;18968 18966 4 AVLAASSSYFR DVSVVVKGHAFKAHRAVLAASSSYFRDLFN KAHRAVLAASSSYFRDLFNNSRSAVVELPA R A V F R D 3 1 0 0 0 0 0 0 0 0 1 0 0 1 0 3 0 0 1 1 0 0 11 0 1170.6033 Q96RE7;K7ENW4 Q96RE7 46 56 NACC1 Nucleus accumbens-associated protein 1 yes no 2 0.00021132 98.033 By MS/MS By matching By matching 1 4 1 1.7851 1.4922 91.538 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0147 1.037 NaN 1 0 Median 2.0077 1.6265 112.62 4 0 Median NaN NaN NaN 0 0 Median 1.6398 1.4423 NaN 1 0 Median 14799000 6269900 8528600 0 0 0 0 0 0 8238400 4177100 4061300 6148800 1950000 4198900 0 0 0 411300 142840 268460 3487 3725 3633 18310;18311;18312;18313;18314;18315 18969 18969 1 AVLAESYER SRDWAAKGPFLLGIKAVLAESYERIHRSNL FLLGIKAVLAESYERIHRSNLVGMGVIPLE K A V E R I 2 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1036.5189 P21399 P21399 794 802 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.011906 61.962 By MS/MS 1 0.90262 0.88297 NaN 1 Median 0.90262 0.88297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2710900 1308000 1403000 2710900 1308000 1403000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3488 2090 3634 18316 18970 18970 1 AVLALGGSLAGSAAEASHLVTDR PKVLFTGVVDARGERAVLALGGSLAGSAAE LAGSAAEASHLVTDRIRRTVKFLCALGRGI R A V D R I 6 1 0 1 0 0 1 3 1 0 4 0 0 0 0 3 1 0 0 2 0 0 23 0 2165.144 Q14676 Q14676 1908 1930 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 1.1406E-05 53.779 By MS/MS By MS/MS 3 2 1.3958 1.1996 37.698 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4964 1.6309 32.224 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0418 0.90579 39.729 2 0 Median 16172000 7328100 8844000 0 0 0 0 0 0 15239000 6910200 8328800 0 0 0 0 0 0 933100 417890 515210 3489 2887 3635 18317;18318;18319;18320;18321 18971;18972;18973;18974 18971 4 AVLASTPR DPHGIQREDLILSLRAVLASTPRFAEFLLP DLILSLRAVLASTPRFAEFLLPLLIEKVDS R A V P R F 2 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 8 0 813.47085 Q96T76;Q5T454 Q96T76 247 254 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.014501 50.966 By MS/MS By matching By matching By matching 1 1 1 1 1.1584 1.1113 13.1 4 Median 1.1904 1.1954 NaN 1 0 Median 1.0416 0.88446 NaN 1 0 Median 1.1273 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4263 1.1176 NaN 1 0 Median 10304000 4207800 6096400 2588800 1175200 1413600 3705100 1405700 2299400 2411400 977750 1433600 0 0 0 0 0 0 1598900 649130 949800 3490 3742 3636 18322;18323;18324;18325 18975 18975 1 AVLCPPPVK LTQRGLKTVFDEAIRAVLCPPPVKKRKRKC FDEAIRAVLCPPPVKKRKRKCLLL______ R A V V K K 1 0 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 0 0 2 0 0 9 0 979.55247 P63000;P60763 P63000 175 183 RAC1;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3 no no 2 0.060947 45.718 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3491 2615;2528 3637 18326 18976 18976 1 AVLDALLASK YVISGQDQRKEEGMRAVLDALLASKQHWDR EEGMRAVLDALLASKQHWDRDLQVTLIPTF R A V S K Q 3 0 0 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 999.59645 Q66K74;M0R1M7 Q66K74 991 1000 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 2 0.0084719 46.462 By MS/MS By MS/MS By matching 1 1 2 1.2146 1.0848 9.08 4 Median 0.93631 0.92951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1988 1.137 NaN 1 0 Median 1.2901 1.0848 3.9398 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7282700 3235200 4047500 2385500 1157700 1227900 0 0 0 4084300 1738000 2346300 812830 339480 473350 0 0 0 0 0 0 3492 3121 3638 18327;18328;18329;18330 18977;18978;18979 18979 3 AVLDALLEGK YVVSGNDPAAEEPSRAVLDALLEGKAQWGS EEPSRAVLDALLEGKAQWGSNMQVTLIPTH R A V G K A 2 0 0 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1027.5914 E9PGC8;P78559;P46821 P46821 2400 2409 MAP1A;MAP1B Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2;Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 no no 2 0.0061875 49.418 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.4396 1.2035 7.1434 5 Median NaN NaN NaN 0 0 Median 1.424 1.2035 NaN 1 0 Median 1.4396 1.3842 NaN 1 0 Median 1.3686 1.1532 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4987 1.2175 4.0557 2 0 Median 12685000 5329800 7355600 0 0 0 1489100 574560 914520 7662000 3282100 4379800 3058200 1283300 1774900 0 0 0 476190 189890 286300 3493 2347;923 3639 18331;18332;18333;18334;18335 18980;18981;18982 18981 3 AVLEEGTDVVIK DGVFTDVAGPELQNKAVLEEGTDVVIKMLQ QNKAVLEEGTDVVIKMLQTAKNLLKEEKLV K A V I K M 1 0 0 1 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 3 0 0 12 0 1271.6973 Q9NSE4 Q9NSE4 434 445 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 5.2871E-06 99.815 By MS/MS By matching 1 1 0.87731 0.89571 1.9992 2 Median 0.94221 0.90846 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81689 0.88313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22327000 11110000 11217000 19798000 9763600 10035000 0 0 0 2528800 1346200 1182600 0 0 0 0 0 0 0 0 0 3494 4103 3640 18336;18337 18983;18984 18984 2 AVLEEKEKDLANTGK QNLLKGKEEQMNTMKAVLEEKEKDLANTGK AVLEEKEKDLANTGKWLQDLQEENESLKAH K A V G K W 2 0 1 1 0 0 3 1 0 0 2 3 0 0 0 0 1 0 0 1 0 0 15 2 1643.873 Q86UP2;G3V4Y7 Q86UP2 881 895 KTN1 Kinectin yes no 3;4 0.0001105 58.885 By MS/MS By MS/MS By matching 3 1 2 0.99691 1.0671 22.118 6 Median 1.0486 1.1481 26.193 3 0 Median NaN NaN NaN 0 0 Median 1.2238 1.4705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9302 0.98466 1.0416 2 0 Median 17361000 8019500 9341300 11627000 5315200 6312300 0 0 0 3916500 1975800 1940700 0 0 0 0 0 0 1816900 728550 1088300 3495 3280 3641 18338;18339;18340;18341;18342;18343 18985;18986;18987;18988;18989;18990;18991;18992 18992 8 AVLENALR FQPQSPDFLDITNPKAVLENALRNFACLTT LDITNPKAVLENALRNFACLTTGDVIAINY K A V L R N 2 1 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 884.50797 Q92890;C9JNP9;C9IZG3 Q92890 140 147 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 2 0.014439 70.912 By MS/MS 1 1.0382 1.0288 NaN 1 Median 1.0382 1.0288 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5899000 3150800 2748200 5899000 3150800 2748200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3496 3562 3642 18344 18993 18993 1 AVLENNLGAAVLR APLNLYGKTKLDGEKAVLENNLGAAVLRIP EKAVLENNLGAAVLRIPILYGEVEKLEESA K A V L R I 3 1 2 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 2 0 0 13 0 1338.7619 Q9NZL9;H7C0X7 Q9NZL9 169 181 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2 9.1196E-05 149.72 By MS/MS By MS/MS 2 1 1.07 1.032 29.616 3 Median 1.2911 1.2564 38.68 2 0 Median NaN NaN NaN 0 0 Median 1.07 1.032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54408000 26103000 28305000 52730000 25170000 27560000 0 0 0 1678000 932960 745020 0 0 0 0 0 0 0 0 0 3497 4191 3643 18345;18346;18347 18994;18995;18996 18995 2 AVLEPIQSTSLIGTLTR AAVSNTAGQDEATAKAVLEPIQSTSLIGTL LEPIQSTSLIGTLTRTSDSEVPDVESREDL K A V T R T 1 1 0 0 0 1 1 1 0 2 3 0 0 0 1 2 3 0 0 1 0 0 17 0 1798.02 Q6ZMI0 Q6ZMI0 635 651 PPP1R21 Protein phosphatase 1 regulatory subunit 21 yes yes 2 2.7598E-05 56.225 By matching By MS/MS By matching 1 1 1 0.60778 0.64856 18.902 3 Median 0.59975 0.59761 NaN 1 0 Median 0.94506 0.85704 NaN 1 0 Median 0.60778 0.64856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2722200 1638700 1083500 794790 483660 311120 867170 452070 415100 1060200 702990 357230 0 0 0 0 0 0 0 0 0 3498 3197 3644 18348;18349;18350 18997 18997 1 AVLEQEETAAASR LTEGAKEEGGEEVAKAVLEQEETAAASRER AKAVLEQEETAAASRERQEEQSAAIHISET K A V S R E 4 1 0 0 0 1 3 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 0 1373.6787 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18 A0A0A0MRA8 743 755 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 1.8231E-14 139.86 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0631 0.97262 5.7848 5 Median 1.05 1.0281 3.844 2 1 Median 1.1012 0.925 NaN 1 0 Median 0.90519 0.97262 NaN 1 0 Median 1.0781 0.91892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20515000 8940200 11574000 9295700 3989000 5306700 6802700 3060700 3742000 3178300 1336100 1842200 1237800 554350 683460 0 0 0 0 0 0 3499 156 3645 18351;18352;18353;18354;18355;18356;18357 18998;18999;19000;19001;19002;19003 18999 6 AVLFCLSDDKR VRKSSTQEEIKKRKKAVLFCLSDDKRQIIV KRKKAVLFCLSDDKRQIIVEEAKQILVGDI K A V K R Q 1 1 0 2 1 0 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 11 1 1322.6653 Q9Y281;F8WDN3 Q9Y281 35 45 CFL2 Cofilin-2 yes no 2 0.0036907 69.954 By MS/MS 1 1.5096 1.3315 NaN 1 Median NaN NaN NaN 0 0 Median 1.5096 1.3315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 788580 302860 485720 0 0 0 788580 302860 485720 0 0 0 0 0 0 0 0 0 0 0 0 3500 4378 3646 18358 19004 19004 1 AVLFCLSEDK VRKSSTPEEVKKRKKAVLFCLSEDKKNIIL KKRKKAVLFCLSEDKKNIILEEGKEILVGD K A V D K K 1 0 0 1 1 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1180.5798 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 35 44 CFL1 Cofilin-1 yes no 2 0.037233 31.934 By MS/MS 1 1.3094 1.1424 NaN 1 Median NaN NaN NaN 0 0 Median 1.3094 1.1424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 731690 311270 420420 0 0 0 731690 311270 420420 0 0 0 0 0 0 0 0 0 0 0 0 3501 2118 3647 18359 19005 19005 1 AVLFCLSEDKK VRKSSTPEEVKKRKKAVLFCLSEDKKNIIL KRKKAVLFCLSEDKKNIILEEGKEILVGDV K A V K K N 1 0 0 1 1 0 1 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 11 1 1308.6748 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 35 45 CFL1 Cofilin-1 yes no 2;3 3.7467E-05 133.57 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1769 1.1297 7.9722 7 Median 1.118 1.112 9.3321 2 0 Median 1.3133 1.1618 3.9601 2 0 Median 1.175 1.1929 NaN 1 0 Median 1.1304 1.017 5.6649 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105660000 45638000 60022000 61335000 27372000 33963000 40028000 16417000 23611000 1493500 578600 914930 2803300 1270500 1532800 0 0 0 0 0 0 3502 2118 3648 18360;18361;18362;18363;18364;18365;18366 19006;19007;19008;19009;19010;19011;19012;19013 19012 8 AVLFPQQR PSHPTFWTYTEAAHRAVLFPQQRLDQLSEI YTEAAHRAVLFPQQRLDQLSEIIERFIFVM R A V Q R L 1 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 957.5396 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 1958 1965 SRCAP Helicase SRCAP yes no 2 0.008475 62.714 By MS/MS By matching By MS/MS 1 1 1 0.96918 1.0392 6.2297 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96918 1.0392 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9148 0.96091 NaN 1 0 Median 1.1053 0.91884 NaN 1 0 Median 11292000 5304800 5987700 0 0 0 0 0 0 5497300 2467500 3029800 0 0 0 3000900 1689300 1311600 2794300 1148000 1646300 3503 3199 3649 18367;18368;18369 19014;19015 19014 2 AVLGANDPEK KPIDYYTETKILQERAVLGANDPEKNFLTT ILQERAVLGANDPEKNFLTTAIRPHGIFGP R A V E K N 2 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1012.5189 Q15738;C9JDR0 Q15738 182 191 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes no 2 0.014222 39.022 By matching By MS/MS 1 1 0.84504 0.7783 3.0873 2 Median 0.77413 0.76149 NaN 1 0 Median 0.92243 0.79548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2862900 1531400 1331500 695920 460150 235770 2167000 1071300 1095700 0 0 0 0 0 0 0 0 0 0 0 0 3504 2966 3650 18370;18371 19016;19017 19017 2 AVLGDDEITR GQTPASPARYSPVSKAVLGDDEITREPRKV SPVSKAVLGDDEITREPRKVVLHRGSTGLG K A V T R E 1 1 0 2 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1087.551 Q12959;A0A590UK81;A0A0C4DFT3;A0A590UKA8;A0A590UJC5;A0A590UJR5;A0A590UJ08;A0A590UJ81;A0A590UJ18;A0A590UJ68;A0A590UJS9;A0A590UJX2;A0A590UK48;A0A590UJR4;A0A590UJ29;A0A590UJD9;A0A590UJ64;E7EQD7;A0A590UK02;A0A590UK70;A0A590UJL2;A0A590UJ25;H7C166 Q12959 453 462 DLG1 Disks large homolog 1 yes no 2 0.017367 57.96 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3505 230 3651 18372 19018 19018 1 AVLGEVVLYSGAR VTRWFVTCVRQPEFRAVLGEVVLYSGARPL FRAVLGEVVLYSGARPLSHQPGPEAPALPK R A V A R P 2 1 0 0 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 3 0 0 13 0 1332.7402 P26640;A0A140T936;A0A140T954 P26640 202 214 VARS Valine--tRNA ligase yes no 2 0.012278 51.927 By MS/MS 1 0.66517 0.56506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66517 0.56506 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4533400 2566500 1966900 0 0 0 0 0 0 0 0 0 4533400 2566500 1966900 0 0 0 0 0 0 3506 2148 3652 18373 19019 19019 1 AVLGEVVLYSGARPLSHQPGPEAPALPK VTRWFVTCVRQPEFRAVLGEVVLYSGARPL PLSHQPGPEAPALPKTAAQLKKEAKKREKL R A V P K T 4 1 0 0 0 1 2 3 1 0 4 1 0 0 5 2 0 0 1 3 0 0 28 1 2852.5549 P26640;A0A140T936;A0A140T954 P26640 202 229 VARS Valine--tRNA ligase yes no 3 0.036262 12.346 By MS/MS 1 0.48795 0.55265 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48795 0.55265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5082200 3517200 1565000 0 0 0 0 0 0 5082200 3517200 1565000 0 0 0 0 0 0 0 0 0 3507 2148 3653 18374 19020 19020 1 AVLGSSPFLSEANAER VAKKSLRSEDPSGKKAVLGSSPFLSEANAE VLGSSPFLSEANAERIVRTLCKVRGAALKL K A V E R I 3 1 1 0 0 0 2 1 0 0 2 0 0 1 1 3 0 0 0 1 0 0 16 0 1646.8264 Q8NI60 Q8NI60 247 262 ADCK3 Atypical kinase ADCK3, mitochondrial yes yes 2 6.1853E-10 104.87 By MS/MS By MS/MS 1 2 0.79208 0.77933 27.128 3 Median 0.76014 0.73634 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.96904 0.97059 31.037 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28185000 14295000 13890000 7261300 3804200 3457100 0 0 0 20924000 10491000 10433000 0 0 0 0 0 0 0 0 0 3508 3449 3654 18375;18376;18377 19021;19022;19023;19024 19023 4 AVLGTSNFK SSLHLKAFTYINLDKAVLGTSNFKVSASPL YINLDKAVLGTSNFKVSASPLLYTLIEKTM K A V F K V 1 0 1 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 935.50763 P02786;G3V0E5 P02786 487 495 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0005572 114.6 By MS/MS By MS/MS 1 1 1.4673 1.3342 28.44 2 Median 1.7245 1.6313 NaN 1 0 Median 1.2485 1.0911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14338000 6118900 8219500 4568600 1734000 2834600 9769800 4384900 5384900 0 0 0 0 0 0 0 0 0 0 0 0 3509 1836 3655 18378;18379 19025;19026;19027 19027 3 AVLHVALR ERMFNGEKINYTEGRAVLHVALRNRSNTPI INYTEGRAVLHVALRNRSNTPILVDGKDVM R A V L R N 2 1 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 8 0 877.54977 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ELR7;A0A2R8YF08;CON__Q3ZBD7 P06744 97 104 GPI Glucose-6-phosphate isomerase yes no 2 0.0023065 111.69 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.0938 1.0488 16.309 8 Median 1.1319 1.0573 17.076 3 0 Median 1.1065 0.92893 20.553 3 0 Median 1.0784 1.1042 NaN 1 0 Median 1.0813 0.92695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166130000 76721000 89408000 111220000 50870000 60354000 44511000 21000000 23511000 6063400 2878900 3184500 4329400 1971400 2358000 0 0 0 0 0 0 3510 1875 3656 18380;18381;18382;18383;18384;18385;18386;18387 19028;19029;19030;19031;19032;19033;19034;19035 19029 8 AVLIAGQPGTGK GVVLEMIREGKIAGRAVLIAGQPGTGKTAI AGRAVLIAGQPGTGKTAIAMGMAQALGPDT R A V G K T 2 0 0 0 0 1 0 3 0 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1110.6397 Q9Y230;M0R0Y3;X6R2L4;M0QXI6 Q9Y230 72 83 RUVBL2 RuvB-like 2 yes no 2 9.9476E-05 91.584 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 1 1.0017 0.90056 11.12 10 Median 0.956 0.88478 NaN 1 0 Median 1.1319 0.95862 NaN 1 0 Median 0.85745 0.85134 1.7248 2 0 Median 0.992 0.87406 4.9649 3 0 Median 1.1169 1.1217 6.7835 2 0 Median 1.1446 0.94085 NaN 1 0 Median 106080000 52354000 53723000 14256000 6853300 7402600 15061000 7192200 7868900 37708000 19838000 17870000 22905000 11304000 11600000 10217000 4341100 5875400 5930700 2825300 3105400 3511 4368 3657 18388;18389;18390;18391;18392;18393;18394;18395;18396;18397 19036;19037;19038;19039;19040;19041;19042;19043;19044;19045;19046;19047;19048;19049;19050 19036 15 AVLICLAQLGEPELR AIRHTPLPQQRHVSKAVLICLAQLGEPELR AVLICLAQLGEPELRDSRDELLASMMAGVK K A V L R D 2 1 0 0 1 1 2 1 0 1 4 0 0 0 1 0 0 0 0 1 0 0 15 0 1680.9233 Q9Y4R8;H3BRS3 Q9Y4R8 363 377 TELO2 Telomere length regulation protein TEL2 homolog yes no 2 0.020724 41.283 By MS/MS 1 0.73403 0.64193 NaN 1 Median NaN NaN NaN 0 0 Median 0.73403 0.64193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1710000 982310 727660 0 0 0 1710000 982310 727660 0 0 0 0 0 0 0 0 0 0 0 0 3512 4447 3658 18398 19051 19051 1 AVLLAGPPGTGK GVIVELIKSKKMAGRAVLLAGPPGTGKTAL AGRAVLLAGPPGTGKTALALAIAQELGSKV R A V G K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1079.6339 Q9Y265;E7ETR0 Q9Y265 65 76 RUVBL1 RuvB-like 1 yes no 2 3.5815E-06 116.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 3 0.91844 0.80762 19.23 12 Median 0.83394 0.76904 NaN 1 0 Median 0.97624 0.82717 NaN 1 0 Median 0.73724 0.71012 10.302 2 0 Median 0.81395 0.71441 15.799 2 0 Median 0.93381 0.987 11.912 3 0 Median 1.3642 1.1106 24.278 3 0 Median 162490000 90911000 71578000 25629000 13589000 12040000 12844000 6490800 6352900 71062000 41940000 29122000 28408000 15762000 12646000 15057000 8392000 6665100 9488400 4737400 4751000 3513 4375 3659 18399;18400;18401;18402;18403;18404;18405;18406;18407;18408;18409;18410 19052;19053;19054;19055;19056;19057;19058;19059;19060;19061;19062;19063;19064;19065;19066 19056 15 AVLLAVAVK AKNLVAFVSQEAGNRAVLLAVAVKDKSMEG QEAGNRAVLLAVAVKDKSMEGLKALREVIR R A V V K D 3 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 9 0 882.59024 Q9BT73 Q9BT73 94 102 PSMG3 Proteasome assembly chaperone 3 yes yes 2 0.00080273 97.068 By MS/MS By MS/MS By matching 1 1 1 1.1454 0.9879 10.574 3 Plateau 1.0743 0.97978 NaN 1 0 Median 1.1991 0.9879 NaN 1 0 Median 0.81137 0.8193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17677000 8048200 9629000 7907400 3720000 4187400 8699200 3795000 4904200 1070600 533140 537420 0 0 0 0 0 0 0 0 0 3514 3822 3660 18411;18412;18413 19067;19068;19069;19070 19068 4 AVLLDLEPR DVFFYQADDEHYIPRAVLLDLEPRVIHSIL EHYIPRAVLLDLEPRVIHSILNSPYAKLYN R A V P R V 1 1 0 1 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 9 0 1024.5917 P23258;Q9NRH3;K7EIS0;K7EKE5 P23258 64 72 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.92803 0.85328 4.6902 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8894 0.87263 NaN 1 0 Median 0.96834 0.83436 NaN 1 0 Median 0.81667 0.8237 NaN 1 1 Median 1.0581 0.91327 NaN 1 0 Median 30443000 14784000 15659000 0 0 0 0 0 0 17894000 8752500 9141500 10484000 4988800 5495000 1460500 755420 705120 604710 286910 317790 3515 2108 3661 18414;18415;18416;18417 19071;19072;19073;19074;19075;19076;19077;19078 19072 8 AVLLGPPGAGK PSVPAAEPEYPKGIRAVLLGPPGAGKGTQA KGIRAVLLGPPGAGKGTQAPRLAENFCVCH R A V G K G 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 0 0 0 0 1 0 0 11 0 978.58622 F8W1A4;P54819;F8VZG5;F8VY04;G3V213;F8VPP1 F8W1A4 18 28 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 0.00035542 71.379 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.3804 1.1558 30.418 7 Median 0.73002 0.69023 3.953 2 0 Median 1.3941 1.1941 4.612 2 0 Median 0.87168 0.81722 NaN 1 0 Median 1.5273 1.2637 NaN 1 0 Median 1.3808 1.4101 NaN 1 0 Median NaN NaN NaN 0 0 Median 90905000 47971000 42934000 57719000 31512000 26207000 10085000 4290100 5795000 19640000 10562000 9078500 1629800 582810 1047000 1831000 1024300 806760 0 0 0 3516 1081 3662 18418;18419;18420;18421;18422;18423;18424 19079;19080;19081;19082;19083;19084;19085;19086;19087;19088;19089;19090 19082 12 AVLMEKPDVVVGTPSR RVANVSAAEDSVSQRAVLMEKPDVVVGTPS VLMEKPDVVVGTPSRILSHLQQDSLKLRDS R A V S R I 1 1 0 1 0 0 1 1 0 0 1 1 1 0 2 1 1 0 0 4 0 0 16 1 1696.9182 Q9NY93;G3V0G3;H7C3E9;F8WDT8 Q9NY93 129 144 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 3.828E-05 73.848 By matching By MS/MS 1 3 0.66822 0.68506 22.843 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44682 0.48378 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74242 0.75795 13.536 3 1 Median NaN NaN NaN 0 0 Median 43781000 24173000 19608000 0 0 0 0 0 0 4241200 2914400 1326800 0 0 0 39540000 21259000 18281000 0 0 0 3517 4173 3663;3664 18425;18426;18427;18428 19091;19092;19093 19091 1891 3 AVLNLLR SQAYDNLSLSDHLLRAVLNLLRREVSEHGR SLSDHLLRAVLNLLRREVSEHGRHLQQYFN R A V L R R 1 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 797.51232 Q93008 Q93008 2159 2165 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.025554 69.39 By MS/MS By MS/MS 1 1 1.812 1.6502 15.867 2 Median 1.8393 1.8461 NaN 1 1 Median 1.7851 1.475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9266300 1660700 7605600 1839100 373580 1465500 7427200 1287100 6140100 0 0 0 0 0 0 0 0 0 0 0 0 3518 3573 3665 18429;18430 19094;19095 19094 2 AVLNPTPIKR LQQDGVKEVFAEAVRAVLNPTPIKRGRSCI AEAVRAVLNPTPIKRGRSCILL________ R A V K R G 1 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 1 0 0 1 0 0 10 1 1107.6764 P84095 P84095 175 184 RHOG Rho-related GTP-binding protein RhoG yes yes 2 0.0019556 66.073 By matching By MS/MS By matching By matching 1 2 1 1 0.94503 0.83269 34.536 5 Median 0.75069 0.74354 NaN 1 0 Median 0.95209 0.83174 0.16078 2 0 Median 0.94503 0.96977 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4971 1.7663 NaN 1 0 Median NaN NaN NaN 0 0 Median 9743000 5142000 4601100 6066900 3414900 2652000 1650900 825170 825780 1649500 744090 905400 0 0 0 375680 157760 217920 0 0 0 3519 2667 3666 18431;18432;18433;18434;18435 19096;19097 19097 2 AVLPVAESFGFADEIR LQEEMKEGTDMFIIKAVLPVAESFGFADEI VLPVAESFGFADEIRKRTSGLASPQLVFSH K A V I R K 3 1 0 1 0 0 2 1 0 1 1 0 0 2 1 1 0 0 0 2 0 0 16 0 1719.8832 Q7Z2Z2 Q7Z2Z2 1026 1041 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 2 0.0064797 31.478 By MS/MS 1 0.95483 0.94911 NaN 1 Median 0.95483 0.94911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1736800 820530 916290 1736800 820530 916290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3520 3238 3667 18436 19098;19099 19098 2 AVLQALEVLPVAPPPEPR LILKQAAKPPISKKKAVLQALEVLPVAPPP QALEVLPVAPPPEPRSLTAEEVKRLEEQEE K A V P R S 3 1 0 0 0 1 2 0 0 0 3 0 0 0 5 0 0 0 0 3 0 0 18 0 1895.088 Q6PL18;A0A0B4J211 Q6PL18 951 968 ATAD2 ATPase family AAA domain-containing protein 2 yes no 3 0.00068107 32.926 By MS/MS 1 0.38742 0.40446 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38742 0.40446 NaN 1 0 Median NaN NaN NaN 0 0 Median 1157700 900430 257270 0 0 0 0 0 0 0 0 0 0 0 0 1157700 900430 257270 0 0 0 3521 3177 3668 18437 19100 19100 1 AVLQEEQANLWFSK EEEEENPLLVPLEEKAVLQEEQANLWFSKG KAVLQEEQANLWFSKGSFAGIEDDADEALE K A V S K G 2 0 1 0 0 2 2 0 0 0 2 1 0 1 0 1 0 1 0 1 0 0 14 0 1661.8413 Q8IY81 Q8IY81 519 532 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.00054375 69.979 By MS/MS By matching 3 1 1.0703 1.0796 5.8004 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0678 1.0896 7.0047 3 2 Median 1.2849 1.0696 NaN 1 0 Median 32176000 14974000 17202000 0 0 0 0 0 0 0 0 0 0 0 0 31289000 14675000 16614000 887850 299120 588730 3522 3338 3669 18438;18439;18440;18441 19101;19102;19103;19104 19102 4 AVLQEFGR PLDLTDTGSHEAATKAVLQEFGRIDILVNN SHEAATKAVLQEFGRIDILVNNGGMSQRSL K A V G R I 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 918.49232 Q9Y394;H0YJ66;H0YJE4 Q9Y394 124 131 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 2 0.0062934 94.407 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3523 4408 3670 18442 19105 19105 1 AVLQFTPASWTYVR ASFKDIHTTTGKIKRAVLQFTPASWTYVRW RAVLQFTPASWTYVRWFDPKSSFQRVAGVY R A V V R W 2 1 0 0 0 1 0 0 0 0 1 0 0 1 1 1 2 1 1 2 0 0 14 0 1637.8566 P48651 P48651 263 276 PTDSS1 Phosphatidylserine synthase 1 yes yes 2 8.1537E-06 91.937 By MS/MS By matching By matching By matching 2 1 2 1 1.1115 1.08 18.415 6 Median 1.0761 1.0608 8.6336 2 0 Median 1.2279 1.0777 NaN 1 0 Median 1.1692 1.311 27.095 2 0 Median 1.0743 0.93722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16024000 7722000 8302000 13728000 6681700 7046500 559000 253850 305150 1683000 763050 919940 53854 23424 30430 0 0 0 0 0 0 3524 2365 3671 18443;18444;18445;18446;18447;18448 19106;19107;19108;19109 19106 4 AVLQNTAQINQMLSDLNR LRRYTSLNHLAQAARAVLQNTAQINQMLSD QNTAQINQMLSDLNRVDFANVQEQASWVCR R A V N R V 2 1 3 1 0 3 0 0 0 1 3 0 1 0 0 1 1 0 0 1 0 0 18 0 2028.0422 P22670 P22670 763 780 RFX1 MHC class II regulatory factor RFX1 yes yes 2;3 0.00056746 34.094 By MS/MS By matching 3 2 0.87277 0.9515 44.905 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87277 0.9515 49.705 3 0 Median 1.1363 0.99138 55.784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4452100 2478500 1973500 0 0 0 0 0 0 3810900 2164700 1646200 641170 313860 327300 0 0 0 0 0 0 3525 2104 3672 18449;18450;18451;18452;18453 19110;19111;19112 19111 3 AVLQWTK RLGAVDESLSEETQKAVLQWTKHDDSSDNF SLSEETQKAVLQWTKHDDSSDNFCEADDIQ K A V T K H 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 844.48069 Q96HE7;G3V3E6;G3V5B3 Q96HE7 151 157 ERO1L ERO1-like protein alpha yes no 2 0.043995 43.124 By MS/MS 2 1.156 1.0004 2.6779 2 Median NaN NaN NaN 0 0 Median 1.156 1.0004 2.6779 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5187700 2477100 2710600 0 0 0 5187700 2477100 2710600 0 0 0 0 0 0 0 0 0 0 0 0 3526 3666 3673 18454;18455 19113 19113 1 AVLSAEQLR LVSLGGKATTASQAKAVLSAEQLRDEEVHA TASQAKAVLSAEQLRDEEVHAGLGELLRSL K A V L R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 985.55564 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PQ34;E9PLA6 P50454 95 103 SERPINH1 Serpin H1 yes no 2 0.0011047 85.212 By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1.2168 1.0246 22.301 7 Median 1.3096 1.2799 NaN 1 0 Median 1.2592 1.0758 7.1079 2 0 Median 0.82184 0.86585 23.803 2 0 Median 0.90589 0.7862 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5095 1.2978 NaN 1 0 Median 39463000 18600000 20862000 5579800 2555500 3024200 18383000 8314400 10068000 13397000 6772500 6624200 390120 170740 219380 0 0 0 1713400 787200 926190 3527 2414 3674 18456;18457;18458;18459;18460;18461;18462 19114;19115;19116 19115 3 AVLSAEQLRDEEVHAGLGELLR LVSLGGKATTASQAKAVLSAEQLRDEEVHA LRDEEVHAGLGELLRSLSNSTARNVTWKLG K A V L R S 3 2 0 1 0 1 4 2 1 0 5 0 0 0 0 1 0 0 0 2 0 0 22 1 2404.271 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PQ34 P50454 95 116 SERPINH1 Serpin H1 yes no 2;3;4 7.7604E-30 167.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 2 3 6 1.2402 1.1582 20.891 23 Median 1.0845 1.0952 10.169 3 0 Plateau 1.2176 1.1174 5.5142 4 0 Median 1.1089 1.1653 19.06 5 0 Median 1.2435 1.1599 1.6756 2 0 Median 1.8171 1.9943 18.433 3 0 Median 1.2988 1.1483 10.514 6 1 Median 1435300000 619850000 815470000 18574000 8854000 9719700 225010000 94079000 130940000 741070000 342910000 398160000 229710000 96815000 132900000 165690000 55803000 109890000 55266000 21394000 33872000 3528 2414 3675 18463;18464;18465;18466;18467;18468;18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485 19117;19118;19119;19120;19121;19122;19123;19124;19125;19126;19127;19128;19129;19130;19131;19132;19133;19134;19135;19136;19137 19128 21 AVLSTDVQNTPVNLQTSSK QRPTIAMVTAINSQKAVLSTDVQNTPVNLQ TDVQNTPVNLQTSSKVTGPGAEAVQIVAKN K A V S K V 1 0 2 1 0 2 0 0 0 0 2 1 0 0 1 3 3 0 0 3 0 0 19 0 2001.0378 Q96BD5 Q96BD5 167 185 PHF21A PHD finger protein 21A yes yes 2 1.2797E-18 124.86 By MS/MS By matching 1 1 0.77318 0.75762 5.1861 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66732 0.73034 NaN 1 0 Median 0.89583 0.78592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8798700 5143500 3655200 0 0 0 0 0 0 8391500 4934300 3457100 407220 209190 198040 0 0 0 0 0 0 3529 3605 3676 18486;18487 19138;19139 19139 2 AVLTFALDSVER TLVLDPTSKQEKEARAVLTFALDSVERKLL EARAVLTFALDSVERKLLMSSTKGLYSDTE R A V E R K 2 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 2 0 0 12 0 1319.7085 Q9NQT4;M0R050 Q9NQT4 179 190 EXOSC5 Exosome complex component RRP46 yes no 2 0.0026977 74.162 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1911 1.0546 25.162 4 Median 1.008 0.95255 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0949 1.0425 NaN 1 1 Median 1.2958 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0794 1.6701 NaN 1 1 Median 19930000 7561300 12368000 6179400 3020700 3158800 0 0 0 3316000 1767800 1548300 528970 243180 285780 0 0 0 9905200 2529700 7375400 3530 4066 3677 18488;18489;18490;18491;18492 19140;19141;19142;19143;19144 19144 5 AVLTVVKDDDHGILDQFSR LSKLWAEDGEFTSARAVLTVVKDDDHGILD VVKDDDHGILDQFSRSVNVSLTQEELDSGL R A V S R S 1 1 0 4 0 1 0 1 1 1 2 1 0 1 0 1 1 0 0 3 0 0 19 1 2127.096 C9JVY5;Q9Y2D5 C9JVY5 491 509 AKAP2 A-kinase anchor protein 2 yes no 3 1.5623E-05 47.754 By MS/MS 1 0.83077 0.9411 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83077 0.9411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6232900 3698300 2534600 0 0 0 0 0 0 6232900 3698300 2534600 0 0 0 0 0 0 0 0 0 3531 726 3678 18493 19145;19146 19146 2 AVLVDLEPGTMDSVR NVYYNEATGGKYVPRAVLVDLEPGTMDSVR AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF R A V V R S 1 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 3 0 0 15 0 1600.8131 P04350;M0QY85;M0R278;M0R0X0;M0QY37;M0QX14;M0QZL7;A0A075B724;P68371;Q3ZCM7 P68371 63 77 TUBB4A;TUBB8;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain no no 2;3 1.0879E-31 155.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 14 8 8 9 11 1.0296 0.91734 41.046 61 Median 0.98983 0.95623 18.253 12 1 Median 0.91303 0.75887 15.386 14 0 Median 1.0482 1.0383 4.0995 8 1 Median 1.065 0.91587 5.0543 8 0 Median 1.2182 1.2706 107.62 8 2 Median 1.0484 0.86125 25.373 11 0 Median 1399800000 687470000 712320000 629240000 312080000 317160000 341820000 172610000 169210000 247900000 117100000 130800000 44455000 21393000 23062000 70812000 33622000 37190000 65556000 30658000 34898000 3532 2634;1849 3679;3680 18494;18495;18496;18497;18498;18499;18500;18501;18502;18503;18504;18505;18506;18507;18508;18509;18510;18511;18512;18513;18514;18515;18516;18517;18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554;18555 19147;19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181;19182;19183;19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207 19176 607 61 AVMEQANLQR QLCASLLARVEPPLKAVMEQANLQREDISS EPPLKAVMEQANLQREDISSIEIVGGATRI K A V Q R E 2 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1158.5815 O95757;E9PDE8;D6RJ96 O95757 323 332 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.0026267 73.248 By MS/MS 1 0.25061 0.21188 NaN 1 Median NaN NaN NaN 0 0 Median 0.25061 0.21188 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4532300 3470500 1061700 0 0 0 4532300 3470500 1061700 0 0 0 0 0 0 0 0 0 0 0 0 3533 1790 3681 18556 19208 19208 1 AVMHFESFITEK DTLAVASFRSKAYTRAVMHFESFITEKKQN YTRAVMHFESFITEKKQNIQEHLGFLQKLY R A V E K K 1 0 0 0 0 0 2 0 1 1 0 1 1 2 0 1 1 0 0 1 0 0 12 0 1437.6962 A0A590UJ01;Q13535 A0A590UJ01 1251 1262 ATR Serine/threonine-protein kinase ATR yes no 2 0.0050966 41.876 By MS/MS 1 0.45903 0.3806 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45903 0.3806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6555000 5389300 1165700 0 0 0 0 0 0 0 0 0 6555000 5389300 1165700 0 0 0 0 0 0 3534 480 3682 18557 19209 19209 1 AVMHFLVNHVK YFLIVRKNIQDSVPKAVMHFLVNHVKDTLQ SVPKAVMHFLVNHVKDTLQSELVGQLYKSS K A V V K D 1 0 1 0 0 0 0 0 2 0 1 1 1 1 0 0 0 0 0 3 0 0 11 0 1293.7016 O00429 O00429 669 679 DNM1L Dynamin-1-like protein yes yes 3 0.0007401 51.872 By matching By MS/MS By MS/MS 1 1 1 0.93343 0.84986 32.181 3 Median 0.93343 0.84986 NaN 1 0 Median 0.905 0.79115 NaN 1 0 Median 1.3423 1.4268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19414000 9314500 10099000 10179000 5349700 4829600 5321000 2828300 2492700 3913400 1136500 2776900 0 0 0 0 0 0 0 0 0 3535 1463 3683 18558;18559;18560 19210;19211;19212 19212 3 AVMISAIEK RIVPGQFLAVDPKGRAVMISAIEKQKLVYI VDPKGRAVMISAIEKQKLVYILNRDAAARL R A V E K Q 2 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 9 0 960.5314 Q15393 Q15393 129 137 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0027536 69.825 By MS/MS By MS/MS By matching 2 1 1 1.2664 1.1465 17.868 4 Median NaN NaN NaN 0 0 Median 1.2664 1.1267 23.302 2 0 Median 0.9309 0.99329 NaN 1 1 Median 1.5411 1.3234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48989000 22874000 26116000 0 0 0 24057000 11027000 13029000 21500000 10631000 10869000 3433000 1215500 2217500 0 0 0 0 0 0 3536 2946 3684 18561;18562;18563;18564 19213;19214;19215 19214 3 AVMLLHTHTITSR DKSWCQEELSVAVKRAVMLLHTHTITSRVG KRAVMLLHTHTITSRVGKGEPGAAPLSAPA R A V S R V 1 1 0 0 0 0 0 0 2 1 2 0 1 0 0 1 3 0 0 1 0 0 13 0 1478.8028 Q92616 Q92616 950 962 GCN1L1 Translational activator GCN1 yes yes 2;3 9.7258E-16 145.89 By MS/MS By MS/MS 3 3 1.1454 1.0308 7.2404 4 Median 1.1215 1.0704 8.4891 3 3 Median 1.2422 0.99259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60141000 27612000 32529000 20496000 9539600 10956000 39646000 18072000 21573000 0 0 0 0 0 0 0 0 0 0 0 0 3537 3544 3685 18565;18566;18567;18568;18569;18570 19216;19217;19218;19219;19220;19221;19222 19216 7 AVMLPGAR INFKDPQFAEDYIFKAVMLPGARKPAAVLK AEDYIFKAVMLPGARKPAAVLKPSDWEKSS K A V A R K 2 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 8 0 813.45309 Q9H0D6 Q9H0D6 768 775 XRN2 5-3 exoribonuclease 2 yes yes 2 0.045657 53.71 By MS/MS 1 1.0786 0.98149 NaN 1 Median NaN NaN NaN 0 0 Median 1.0786 0.98149 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 757270 275990 481290 0 0 0 757270 275990 481290 0 0 0 0 0 0 0 0 0 0 0 0 3538 3924 3686 18571 19223 19223 1 AVMNFVVR PMTESLFPGYHTKARAVMNFVVRYRPDEQP GYHTKARAVMNFVVRYRPDEQPSLRPHHDS R A V V R Y 1 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 3 0 0 8 0 934.50586 O60568;H7C2S8 O60568 648 655 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes no 2 0.008475 62.714 By MS/MS By matching 1 1 1.1331 1.0346 2.2473 2 Median 1.0596 1.0183 NaN 1 0 Median 1.2118 1.0512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6927400 3015500 3911900 4398100 1992700 2405400 2529400 1022900 1506500 0 0 0 0 0 0 0 0 0 0 0 0 3539 1621 3687 18572;18573 19224 19224 1 AVMSNLSAHGVK DGNQYVREAADDCAKAVMSNLSAHGVKLVL CAKAVMSNLSAHGVKLVLPSLLAALEEESW K A V V K L 2 0 1 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 2 0 0 12 0 1212.6285 Q92616 Q92616 1485 1496 GCN1L1 Translational activator GCN1 yes yes 2;3 0.00031725 75.294 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.2371 1.1569 49.17 7 Median 1.2407 1.194 0.53581 2 0 Median 1.2329 1.0862 69.154 3 1 Median 1.2734 1.4134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85071 0.72893 NaN 1 1 Median 32104000 17925000 14179000 8092600 3865200 4227400 19776000 12061000 7715600 1597500 525080 1072400 0 0 0 0 0 0 2637400 1473500 1163900 3540 3544 3688 18574;18575;18576;18577;18578;18579;18580 19225;19226;19227;19228;19229;19230;19231 19228 7 AVNEQGKEVTEFGNK GQPLEEIITYYPAMKAVNEQGKEVTEFGNK AVNEQGKEVTEFGNKYWLMLNEKEAQQVYG K A V N K Y 1 0 2 0 0 1 3 2 0 0 0 2 0 1 0 0 1 0 0 2 0 0 15 1 1648.8057 Q9H7Z7;A6NHH0;X6RJ95 Q9H7Z7 194 208 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes no 3 0.0030806 30.961 By matching By MS/MS 1 1 1.1135 1.0414 18.028 2 Median 0.94482 0.91672 NaN 1 0 Median 1.3124 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3058000 1429300 1628700 1906100 930310 975820 1151800 498980 652840 0 0 0 0 0 0 0 0 0 0 0 0 3541 3985 3689 18581;18582 19232 19232 1 AVNNSNYGWR IEQADPENMVENEYKAVNNSNYGWRALRLL ENEYKAVNNSNYGWRALRLLARRSPHFFQP K A V W R A 1 1 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 10 0 1179.5421 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 486 495 THOC1 THO complex subunit 1 yes no 2 0.0028319 71.501 By MS/MS 1 0.99313 0.85575 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99313 0.85575 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2110700 1174000 936740 0 0 0 0 0 0 0 0 0 2110700 1174000 936740 0 0 0 0 0 0 3542 62 3690 18583 19233 19233 1 AVNPFLADVDK AFEALGTALKVVGEKAVNPFLADVDKLKLD VGEKAVNPFLADVDKLKLDKIKECSEKVEL K A V D K L 2 0 1 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1187.6186 Q14008 Q14008 474 484 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0076573 60.518 By MS/MS 2 0.69315 0.76495 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69315 0.76495 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11618000 6843000 4775300 0 0 0 0 0 0 11618000 6843000 4775300 0 0 0 0 0 0 0 0 0 3543 2850 3691 18584;18585 19234;19235 19234 2 AVNPFLADVDKLK AFEALGTALKVVGEKAVNPFLADVDKLKLD EKAVNPFLADVDKLKLDKIKECSEKVELIH K A V L K L 2 0 1 2 0 0 0 0 0 0 2 2 0 1 1 0 0 0 0 2 0 0 13 1 1428.7977 Q14008 Q14008 474 486 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00049732 51.875 By matching By MS/MS By matching By matching 1 2 1 2 1.096 1.1053 10.464 5 Median 1.0747 1.1053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0212 1.1739 10.67 2 0 Median 1.1089 1.0308 NaN 1 0 Median 1.261 1.316 NaN 1 0 Median NaN NaN NaN 0 0 Median 11036000 5186100 5850000 1389100 707270 681790 0 0 0 8085000 3858800 4226200 261910 127910 134000 1300100 492140 807990 0 0 0 3544 2850 3692 18586;18587;18588;18589;18590;18591 19236;19237 19237 2 AVNPFLADVDKLKLDK AFEALGTALKVVGEKAVNPFLADVDKLKLD VNPFLADVDKLKLDKIKECSEKVELIHGKK K A V D K I 2 0 1 3 0 0 0 0 0 0 3 3 0 1 1 0 0 0 0 2 0 0 16 2 1785.0036 Q14008 Q14008 474 489 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.070931 9.7492 By MS/MS 1 1.0367 1.2011 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0367 1.2011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4819800 2299300 2520500 0 0 0 0 0 0 4819800 2299300 2520500 0 0 0 0 0 0 0 0 0 3545 2850 3693 18592 19238 19238 1 AVNPIIPPTGLVR EGTVGSVDGHMKLYRAVNPIIPPTGLVRAP YRAVNPIIPPTGLVRAPCGLCPVFDDCHEG R A V V R A 1 1 1 0 0 0 0 1 0 2 1 0 0 0 3 0 1 0 0 2 0 0 13 0 1345.8082 Q9H1D9 Q9H1D9 272 284 POLR3F DNA-directed RNA polymerase III subunit RPC6 yes yes 2 0.0034173 44.318 By MS/MS By matching By matching By matching 1 1 1 1 0.75305 0.67564 7.1171 4 Median 0.61715 0.59627 NaN 1 0 Median 0.81421 0.70093 NaN 1 0 Median 0.71106 0.68197 NaN 1 0 Median 0.79751 0.66937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4698700 2693800 2004900 2296900 1370200 926700 447310 230760 216550 1381300 787160 594170 573170 305730 267440 0 0 0 0 0 0 3546 3934 3694 18593;18594;18595;18596 19239;19240 19239 2 AVNTQALSGAGILR DPDLRQFLESSELPRAVNTQALSGAGILRM RAVNTQALSGAGILRMVNKAADAVNKMTIK R A V L R M 3 1 1 0 0 1 0 2 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1369.7678 O60749 O60749 270 283 SNX2 Sorting nexin-2 yes yes 2 8.1537E-06 153.12 By MS/MS By matching By matching By MS/MS 3 2 2 1 1.2158 1.1083 13.823 8 Median 1.1449 1.1278 3.6799 3 1 Median 1.301 1.1462 8.9662 2 0 Median 1.1023 1.1322 34.803 2 0 Median 1.3018 1.0891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61731000 27900000 33831000 48444000 22081000 26363000 4821800 2106500 2715300 7494100 3307800 4186200 971040 404410 566640 0 0 0 0 0 0 3547 1629 3695 18597;18598;18599;18600;18601;18602;18603;18604 19241;19242;19243;19244;19245 19242 5 AVNVYSTSVTSDNLSR ______________________________ VNVYSTSVTSDNLSRHDMLAWINESLQLNL M A V S R H 1 1 2 1 0 0 0 0 0 0 1 0 0 0 0 4 2 0 1 3 0 0 16 0 1711.8377 Q15691 Q15691 2 17 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2 3.689E-10 136.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 3 2 3 1.1924 1.0386 18.279 16 Median 1.1573 1.0894 4.2233 3 0 Median 1.2313 1.0105 2.6919 2 0 Median 1.2252 1.0402 8.1066 3 0 Plateau 1.2278 0.98633 3.2132 3 0 Median 1.5564 1.6148 3.014 2 0 Median 1.1043 0.8693 10.906 3 0 Median 283690000 126880000 156810000 171840000 78873000 92967000 6826700 3063700 3763000 74627000 32906000 41720000 10669000 4670400 5998900 19161000 7080900 12080000 564810 287490 277320 3548 2963 3696 18605;18606;18607;18608;18609;18610;18611;18612;18613;18614;18615;18616;18617;18618;18619;18620 19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260;19261;19262;19263;19264;19265;19266 19246 21 AVNVYSTSVTSENLSR ______________________________ VNVYSTSVTSENLSRHDMLAWVNDSLHLNY M A V S R H 1 1 2 0 0 0 1 0 0 0 1 0 0 0 0 4 2 0 1 3 0 0 16 0 1725.8533 Q9UPY8;C9JB30 Q9UPY8 2 17 MAPRE3 Microtubule-associated protein RP/EB family member 3 yes no 2 4.3989E-10 106.49 By MS/MS By MS/MS By matching 1 1 1 1.1185 0.98542 5.3099 3 Median 1.0528 0.98542 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1185 1.0765 NaN 1 1 Median 1.1612 0.97873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8425400 4020700 4404700 6657700 3200800 3456800 0 0 0 1604500 748400 856100 163250 71441 91807 0 0 0 0 0 0 3549 686 3697 18621;18622;18623 19267;19268 19267 2 AVNYFSK NDLLMVLSPRLDHTRAVNYFSKVKQLPLVK SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ R A V S K V 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 7 0 827.41775 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1439 1445 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.014908 73.039 By MS/MS 1 1.4334 1.2699 NaN 1 Median NaN NaN NaN 0 0 Median 1.4334 1.2699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12550000 5305700 7244200 0 0 0 12550000 5305700 7244200 0 0 0 0 0 0 0 0 0 0 0 0 3550 44 3698 18624 19269;19270 19269 2 AVPEGFVIPR YILEKYDGHLPIEIKAVPEGFVIPRGNVLF PIEIKAVPEGFVIPRGNVLFTVENTDPECY K A V P R G 1 1 0 0 0 0 1 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 10 0 1083.6077 P43490;A0A0C4DFS8 P43490 118 127 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.0026267 73.248 By MS/MS 2 0.91819 0.89651 NaN 1 Median 0.91819 0.89651 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5712400 2980900 2731500 5712400 2980900 2731500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3551 2326 3699 18625;18626 19271;19272;19273 19272 3 AVPETEDVQASVSDTAQQPSEEQSK ESVASSQLDSTSVDKAVPETEDVQASVSDT SVSDTAQQPSEEQSKSL_____________ K A V S K S 3 0 0 2 0 4 4 0 0 0 0 1 0 0 2 4 2 0 0 3 0 0 25 0 2659.2097 H0YMR5;H0YLR2;H0YME2;H0YK21;H0YK54;Q6FIF0 H0YMR5 129 153 ZFAND6 AN1-type zinc finger protein 6 yes no 3 6.1034E-05 27.168 By MS/MS By MS/MS 1 1 0.76907 0.69458 12.915 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79085 0.761 NaN 1 0 Median 0.7479 0.63396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12391000 6481400 5909300 0 0 0 0 0 0 10930000 5700200 5230200 1460300 781220 679100 0 0 0 0 0 0 3552 1187 3700 18627;18628 19274;19275;19276 19275 3 AVPETRPNHTIYINNLNEK ______________________________ TRPNHTIYINNLNEKIKKDELKKSLYAIFS M A V E K I 1 1 4 0 0 0 2 0 1 2 1 1 0 0 2 0 2 0 1 1 0 0 19 1 2222.1444 P09012;M0R268;M0R221;M0R2B8;M0QXK2;M0R0G9 P09012 2 20 SNRPA U1 small nuclear ribonucleoprotein A yes no 2;3 1.9385E-19 156.5 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 4 2 0.75462 0.76781 9.6791 15 Median 0.69522 0.70966 NaN 1 0 Median 0.99712 0.87988 1.2445 2 0 Median 0.70489 0.75053 4.5609 3 0 Median 0.85741 0.80915 3.7487 3 0 Median 0.70699 0.76512 0.49025 4 0 Median 0.85551 0.72831 26.829 2 0 Median 1919800000 1058700000 861110000 88286000 49046000 39239000 2818300 1428900 1389400 1237400000 686290000 551090000 175590000 86904000 88687000 414810000 234560000 180260000 903550 452740 450810 3553 1910 3701 18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641;18642;18643 19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298 19283 22 AVPETTECPEGIGIENEALR A V L R 2 1 1 0 1 0 5 2 0 2 1 0 0 0 2 0 2 0 0 1 0 0 20 0 2184.0369 REV__A0A0A0MRA3 yes no 2 0.03908 20.663 By MS/MS 1 0.75598 0.75322 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75598 0.75322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16241000 8755000 7486400 0 0 0 0 0 0 16241000 8755000 7486400 0 0 0 0 0 0 0 0 0 + 3554 4507 3702 18644 19299 19299 1 AVPFNAPK KKEWLRSPDNPMNQRAVPFNAPK_______ DNPMNQRAVPFNAPK_______________ R A V P K - 2 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 8 0 842.46504 Q96CT7 Q96CT7 216 223 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 0.0062714 71.949 By MS/MS By MS/MS 3 3 0.49592 0.42752 27.442 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42486 0.43182 22.668 3 0 Median 0.5669 0.42326 36.919 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23051000 14341000 8709800 0 0 0 0 0 0 10658000 6855800 3802300 12393000 7485300 4907400 0 0 0 0 0 0 3555 3621 3703 18645;18646;18647;18648;18649;18650 19300;19301;19302;19303;19304;19305 19304 6 AVPFQNAILNVK ESPDNVVSTTGFSIKAVPFQNAILNVKELG SIKAVPFQNAILNVKELGGADNIRKYWSRY K A V V K E 2 0 2 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 12 0 1312.7503 Q9NXU5;A0A087WUW9;A0A0B4J222 Q9NXU5 70 81 ARL15 ADP-ribosylation factor-like protein 15 yes no 2 0.0040418 66.621 By MS/MS 1 0.71629 0.66596 NaN 1 Median 0.71629 0.66596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6307400 3521700 2785800 6307400 3521700 2785800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3556 36 3704 18651 19306 19306 1 AVPGAPELLER GVLFDCDGVLWNGERAVPGAPELLERLARA NGERAVPGAPELLERLARAGKAALFVSNNS R A V E R L 2 1 0 0 0 0 2 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1150.6346 Q96GD0 Q96GD0 36 46 PDXP Pyridoxal phosphate phosphatase yes yes 2 0.027673 50.108 By MS/MS 1 0.87621 0.82672 NaN 1 Median 0.87621 0.82672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5409900 3151900 2257900 5409900 3151900 2257900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3557 3655 3705 18652 19307 19307 1 AVPKEDIYSGGGGGGSR VKFHPIQGHRVEVKKAVPKEDIYSGGGGGG PKEDIYSGGGGGGSRSSRGGRGGRGRGGGR K A V S R S 1 1 0 1 0 0 1 6 0 1 0 1 0 0 1 2 0 0 1 1 0 0 17 1 1605.7747 Q13151 Q13151 173 189 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 1.1029E-13 119.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 2 0.98859 0.92829 8.6289 16 Median 0.92955 0.92054 15.628 2 1 Median 1.0116 0.91552 2.9251 2 0 Median 0.84516 0.91793 0.62224 2 0 Median 1.1411 1.0622 5.586 4 0 Median 0.82859 0.89396 6.0976 4 0 Median 1.0567 0.94335 7.3794 2 0 Median 180070000 92666000 87409000 4119800 2246500 1873300 5845400 2684900 3160500 23228000 12523000 10705000 37654000 16830000 20824000 97558000 52995000 44563000 11669000 5386000 6282900 3558 2790 3706 18653;18654;18655;18656;18657;18658;18659;18660;18661;18662;18663;18664;18665;18666;18667;18668 19308;19309;19310;19311;19312;19313;19314;19315;19316;19317;19318;19319;19320;19321;19322;19323;19324;19325;19326;19327;19328;19329;19330;19331;19332;19333;19334;19335;19336;19337;19338;19339 19329 32 AVPLALALISVSNPR TFGHLLRYGEPTLRRAVPLALALISVSNPR AVPLALALISVSNPRLNILDTLSKFSHDAD R A V P R L 3 1 1 0 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 2 0 0 15 0 1519.9086 Q13200;H7C1H2 Q13200 689 703 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 1.9313E-09 117.09 By MS/MS By MS/MS By matching 5 3 2 0.85038 0.8077 23.742 10 Median 0.82679 0.82334 12.317 5 0 Median 0.88382 0.76476 11.793 3 0 Median 1.2878 1.1156 43.452 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66201000 34888000 31313000 8908500 4637400 4271000 52028000 28057000 23971000 5264000 2193200 3070800 0 0 0 0 0 0 0 0 0 3559 2796 3707 18669;18670;18671;18672;18673;18674;18675;18676;18677;18678 19340;19341;19342;19343;19344;19345;19346 19344 7 AVPLAVPLGQTEVFQALQR ______________________________ AVPLGQTEVFQALQRLHMTIFSQSVSPCGK R A V Q R L 3 1 0 0 0 3 1 1 0 0 3 0 0 1 2 0 1 0 0 3 0 0 19 0 2036.1419 Q86W42 Q86W42 4 22 THOC6 THO complex subunit 6 homolog yes yes 2;3 0.0001402 41.54 By matching By MS/MS By matching By matching 1 5 1 1 0.67707 0.66847 15.633 8 Median 0.81967 0.83989 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66267 0.64496 5.4223 5 0 Median 0.80999 0.68254 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1373 0.94101 NaN 1 0 Median 32751000 18933000 13818000 650620 340760 309860 0 0 0 31704000 18398000 13306000 226130 122230 103910 0 0 0 170880 72368 98508 3560 3290 3708 18679;18680;18681;18682;18683;18684;18685;18686 19347;19348;19349;19350 19350 4 AVPLIHQEGNR YQQDPWAMTDEEKAKAVPLIHQEGNRLYRE EKAKAVPLIHQEGNRLYREGHVKEAAAKYY K A V N R L 1 1 1 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 11 0 1232.6626 O00170;E9PMH2;V9GYQ3 O00170 178 188 AIP AH receptor-interacting protein yes no 2;3 0.00014215 67.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 3 1.0533 0.93689 19.839 13 Median 0.97216 0.94784 13.619 4 2 Median 1.0808 0.90474 4.5592 2 0 Median 1.12 1.0871 21.029 2 0 Median 1.1381 0.99067 1.6584 2 0 Median NaN NaN NaN 0 0 Median 1.0533 0.90094 31.969 3 0 Median 28149000 13835000 14314000 14284000 7334700 6949600 6250700 2842700 3408000 3923900 1861400 2062500 1469400 678860 790580 0 0 0 2220500 1117700 1102800 3561 1445 3709 18687;18688;18689;18690;18691;18692;18693;18694;18695;18696;18697;18698;18699;18700;18701 19351;19352;19353;19354;19355;19356;19357;19358;19359;19360;19361;19362;19363;19364;19365;19366 19360 16 AVPLNASK MPNENDKLNDMEPSKAVPLNASKQDGPMPK NDMEPSKAVPLNASKQDGPMPKPHSVSLND K A V S K Q 2 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 0 798.45995 Q9P0L0 Q9P0L0 147 154 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2 0.066471 31.229 By MS/MS By matching By matching By matching 1 1 1 1 1.4401 1.3053 9.8826 4 Median 1.3274 1.3197 NaN 1 0 Median 1.468 1.2408 NaN 1 0 Median 1.4126 1.2911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8372 1.5535 NaN 1 0 Median 1286700 516440 770220 494420 217600 276820 242720 92595 150130 335840 138940 196900 0 0 0 0 0 0 213680 67310 146370 3562 4205 3710 18702;18703;18704;18705 19367 19367 1 AVPPFVFTR EAAGAEQALVRPRGRAVPPFVFTRRGSMFY VRPRGRAVPPFVFTRRGSMFYDEDGDLAHE R A V T R R 1 1 0 0 0 0 0 0 0 0 0 0 0 2 2 0 1 0 0 2 0 0 9 0 1032.5757 O75896;G3V0I0;F2Z2A9 O75896 39 47 TUSC2 Tumor suppressor candidate 2 yes no 2 0.034001 35.295 By MS/MS By matching 1 1 1.3005 1.1802 25.097 2 Median 1.4424 1.4093 NaN 1 0 Median 1.1726 0.98826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701800 1357100 1344700 2229000 1112400 1116600 472790 244650 228140 0 0 0 0 0 0 0 0 0 0 0 0 3563 1703 3711 18706;18707 19368 19368 1 AVPPTYADLGK ______________________________ ______________________________ M A V G K S 2 0 0 1 0 0 0 1 0 0 1 1 0 0 2 0 1 0 1 1 0 0 11 0 1130.5972 P21796;C9JI87 P21796 2 12 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.00096569 61.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 1.105 0.96062 22.884 8 Median 0.80864 0.74128 9.3693 2 0 Median 1.2053 1.0122 14.49 3 1 Median 1.0256 0.98243 NaN 1 0 Median 1.1155 0.93929 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6497 1.4331 NaN 1 0 Median 130050000 68524000 61522000 113300000 60902000 52402000 8264000 3528600 4735500 4768800 2286900 2481800 3565000 1741500 1823500 0 0 0 143500 64252 79252 3564 2092 3712 18708;18709;18710;18711;18712;18713;18714;18715 19369;19370;19371;19372;19373;19374;19375;19376;19377 19369 9 AVPSWFVR SYPFCWRSDTPLIYKAVPSWFVRVENMVDQ DTPLIYKAVPSWFVRVENMVDQLLRNNDLC K A V V R V 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 8 0 960.51814 P41252;A0A0A0MSX9;J3KR24 P41252 411 418 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.003424 97.071 By MS/MS By matching By matching 1 2 1 1.0165 0.91546 48.672 4 Median 0.98943 0.95446 NaN 1 0 Median 0.65961 0.57119 68.833 2 0 Median NaN NaN NaN 0 0 Median 1.0444 0.90182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18887000 9059400 9827500 8337400 4102500 4234900 10100000 4773700 5326400 0 0 0 449460 183260 266200 0 0 0 0 0 0 3565 2302 3713 18716;18717;18718;18719 19378;19379 19379 2 AVPTDEAR VIMLVGNKSDLRHLRAVPTDEARAFAEKNN SDLRHLRAVPTDEARAFAEKNNLSFIETSA R A V A R A 2 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 8 0 857.4243 H3BSC1;P62491;H3BMH2;B4DQU5;M0R377;M0R2D0;H3BN38;Q15907 Q15907 133 140 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.01208 55.676 By MS/MS By matching 1 1 0.87444 0.78244 5.2156 2 Median 0.80277 0.75411 NaN 1 0 Median 0.9525 0.81183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1230100 686920 543220 973690 557660 416030 256450 129270 127180 0 0 0 0 0 0 0 0 0 0 0 0 3566 1233;2976 3714 18720;18721 19380 19380 1 AVPVESPVQK LRVYARGRLKQRGKKAVPVESPVQKV____ QRGKKAVPVESPVQKV______________ K A V Q K V 1 0 0 0 0 1 1 0 0 0 0 1 0 0 2 1 0 0 0 3 0 0 10 0 1052.5866 Q8TB61 Q8TB61 422 431 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.0028032 58.981 By MS/MS 2 1.0757 0.93626 6.6034 2 Median NaN NaN NaN 0 0 Median 1.0757 0.93626 6.6034 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3366600 1630800 1735800 0 0 0 3366600 1630800 1735800 0 0 0 0 0 0 0 0 0 0 0 0 3567 3458 3715 18722;18723 19381;19382 19381 2 AVPVESPVQKV LRVYARGRLKQRGKKAVPVESPVQKV____ RGKKAVPVESPVQKV_______________ K A V K V - 1 0 0 0 0 1 1 0 0 0 0 1 0 0 2 1 0 0 0 4 0 0 11 1 1151.655 Q8TB61 Q8TB61 422 432 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.013663 60.892 By MS/MS By MS/MS 1 2 0.69094 0.61682 NaN 1 Median NaN NaN NaN 0 0 Median 0.69094 0.61682 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32266000 21811000 10455000 0 0 0 32266000 21811000 10455000 0 0 0 0 0 0 0 0 0 0 0 0 3568 3458 3716 18724;18725;18726 19383;19384;19385 19385 3 AVPVPNMTPSGVGR FRFFQELPGSDPVFKAVPVPNMTPSGVGRE KAVPVPNMTPSGVGRERHSCDALNRWLGEQ K A V G R E 1 1 1 0 0 0 0 2 0 0 0 0 1 0 3 1 1 0 0 3 0 0 14 0 1380.7184 Q6P996;H3BND4;Q86XE2;Q6XYB5 Q6P996 407 420 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.00088131 57.019 By MS/MS 1 1.3783 1.304 NaN 1 Median 1.3783 1.304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11846000 6209200 5636500 11846000 6209200 5636500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3569 3164 3717 18727 19386 19386 1 AVPVWDVLASGYVSGAAR RAATMEVKVGRLRGRAVPVWDVLASGYVSG VWDVLASGYVSGAAREELLAEFGSGTLDLP R A V A R E 4 1 0 1 0 0 0 2 0 0 1 0 0 0 1 2 0 1 1 4 0 0 18 0 1816.9472 P58107;A0A075B730 P58107 4670 4687 EPPK1 Epiplakin yes no 2 0.00024747 42.789 By MS/MS By matching By matching 2 1 1 1.0864 1.0799 10.654 4 Median 1.0864 1.0799 4.3141 2 0 Median 1.4024 1.2178 NaN 1 0 Median 0.93349 0.94508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11403000 5232000 6171400 10611000 4867900 5743000 505750 229050 276700 286730 135050 151680 0 0 0 0 0 0 0 0 0 3570 2520 3718 18728;18729;18730;18731 19387;19388;19389;19390 19387 4 AVPVWDVLASGYVSR RAATMEVKVGRLRGRAVPVWDVLASGYVSR AVPVWDVLASGYVSRAAREELLAEFGSGTL R A V S R A 2 1 0 1 0 0 0 1 0 0 1 0 0 0 1 2 0 1 1 4 0 0 15 0 1617.8515 P58107;A0A075B730 P58107 2533 2547 EPPK1 Epiplakin yes no 2;3 2.4984E-09 147.26 By MS/MS By MS/MS By MS/MS By matching 5 4 4 1 1.2106 1.1387 14.202 14 Median 1.191 1.1492 7.1278 5 0 Median 1.1968 1.0348 6.5633 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4424 1.5426 11.861 4 0 Linear 1.688 1.4926 NaN 1 0 Median 120550000 55634000 64919000 108550000 50224000 58323000 9418500 4428500 4990000 0 0 0 0 0 0 2512400 957980 1554400 75215 23691 51524 3571 2520 3719 18732;18733;18734;18735;18736;18737;18738;18739;18740;18741;18742;18743;18744;18745 19391;19392;19393;19394;19395;19396;19397;19398;19399;19400;19401;19402;19403 19394 13 AVPYPQR VLSLSQSKVLPVPQKAVPYPQRDMPIQAFL KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL K A V Q R D 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 7 0 829.44464 CON__P02666 CON__P02666 177 183 yes yes 2 0.037411 52.231 By matching By MS/MS By MS/MS 1 2 1 0.68366 0.61942 198.46 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97742 0.96473 NaN 1 0 Median 0.15736 0.12471 297.56 2 1 Median NaN NaN NaN 0 0 Median 0.47819 0.39771 NaN 1 0 Median 19294000 10677000 8616600 0 0 0 0 0 0 10999000 5316600 5682500 5766500 3912000 1854500 0 0 0 2528300 1448600 1079700 + 3572 744 3720 18746;18747;18748;18749 19404;19405;19406 19406 3 AVQAAVQYPYEVGIK RRQHPGCLAQEACVRAVQAAVQYPYEVGIK AVQAAVQYPYEVGIKKEEELFLYLLQSGQA R A V I K K 3 0 0 0 0 2 1 1 0 1 0 1 0 0 1 0 0 0 2 3 0 0 15 0 1634.8668 Q08426 Q08426 236 250 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.00046856 49.3 By matching By matching By MS/MS By matching 1 1 1 1 1.1851 1.0512 16.96 4 Median 1.3578 1.3738 NaN 1 0 Median 1.1647 1.0518 NaN 1 0 Median 0.8619 0.91618 NaN 1 0 Median 1.2059 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4727000 2217700 2509300 1060100 436490 623600 339430 168110 171330 2772500 1385900 1386600 554940 227220 327720 0 0 0 0 0 0 3573 2740 3721 18750;18751;18752;18753 19407 19407 1 AVQAQGGESQQEAQR ADSDQASKVQQQKLKAVQAQGGESQQEAQR AVQAQGGESQQEAQRLQAQLNELQAQLSQK K A V Q R L 3 1 0 0 0 5 2 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 15 0 1585.7445 A0A087WY61;K4DIE0;Q14980 Q14980 1574 1588 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0012693 41.283 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.0527 0.93651 5.7473 5 Median NaN NaN NaN 0 0 Median 1.0527 0.93651 NaN 1 0 Median 0.87861 0.97887 NaN 1 0 Median 1.1071 0.95903 NaN 1 0 Median 0.82423 0.84341 NaN 1 0 Median 1.1415 0.93636 NaN 1 0 Median 2019800 1075400 944420 0 0 0 230750 96173 134570 835340 472620 362720 130490 68514 61974 609680 335160 274520 213520 102890 110630 3574 2905;77 3722 18754;18755;18756;18757;18758 19408;19409 19409 2 AVQEAGLGLSTGLR RDLLQLGGELARTSRAVQEAGLGLSTGLRL RAVQEAGLGLSTGLRLAESRAEAALEKQAL R A V L R L 2 1 0 0 0 1 1 3 0 0 3 0 0 0 0 1 1 0 0 1 0 0 14 0 1370.7518 Q5TZA2;B1AKD8;A0A087WW81 Q5TZA2 334 347 CROCC Rootletin yes no 2 2.2446E-07 118.48 By matching By MS/MS By MS/MS 1 1 2 0.92298 0.82707 9.4755 3 Median NaN NaN NaN 0 0 Median 1.0672 0.90293 NaN 1 0 Median 0.67941 0.74718 NaN 1 0 Median 0.92298 0.82707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12750000 6342600 6407300 0 0 0 1612600 873940 738710 5860200 3076200 2784000 5277100 2392500 2884500 0 0 0 0 0 0 3575 3107 3723 18759;18760;18761;18762 19410;19411;19412 19411 3 AVQEIMQEK GKGVIVAKSKEEACKAVQEIMQEKAFGAAG KEEACKAVQEIMQEKAFGAAGETIVIEELL K A V E K A 1 0 0 0 0 2 2 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 9 0 1074.5379 P22102;F8WD69;C9JBJ1;C9JTV6;H7C366 P22102 170 178 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.00045787 124.98 By MS/MS By MS/MS 2 2 0.98095 0.85934 13.233 4 Median 0.87612 0.84361 20.144 2 1 Median 1.0145 0.85934 10.776 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33177000 15970000 17207000 8806200 4485600 4320600 24371000 11484000 12887000 0 0 0 0 0 0 0 0 0 0 0 0 3576 2098 3724 18763;18764;18765;18766 19413;19414;19415;19416;19417;19418 19416 6 AVQELVHPVVDR AHPQLKQCVRQAIERAVQELVHPVVDRSIK IERAVQELVHPVVDRSIKIAMTTCEQIVRK R A V D R S 1 1 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 4 0 0 12 0 1360.7463 A5YKK6;H3BNB1 A5YKK6 1400 1411 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2;3 6.5329E-11 139.86 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 1 1 3 0.74752 0.70165 34.246 9 Median 0.67256 0.63215 14.752 2 1 Median 0.65629 0.56732 44.85 3 0 Median NaN NaN NaN 0 0 Median 0.72703 0.69255 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.125 0.93601 7.7379 3 0 Median 39564000 22771000 16793000 20031000 11662000 8369000 11668000 6804800 4862900 0 0 0 3345800 2146300 1199500 0 0 0 4519700 2158100 2361500 3577 503 3725 18767;18768;18769;18770;18771;18772;18773;18774;18775;18776 19419;19420;19421;19422;19423;19424;19425;19426;19427;19428 19421 10 AVQELWLR EMCGRSPAHYAGYWKAVQELWLRLYQSNLV HYAGYWKAVQELWLRLYQSNLVLVSAINGA K A V L R L 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 8 0 1013.5658 P42126;Q96DC0;H3BS70 P42126 127 134 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 0.0022855 122.78 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.876 0.84181 22.465 5 Median 0.78261 0.74798 10.021 2 0 Median 1.3248 1.1201 NaN 1 0 Median 0.876 0.84181 NaN 1 0 Median 1.447 1.176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74765000 39667000 35099000 61894000 33544000 28350000 4307400 1799600 2507700 8412100 4264600 4147400 151680 58163 93519 0 0 0 0 0 0 3578 2305 3726 18777;18778;18779;18780;18781 19429;19430;19431;19432;19433;19434 19431 6 AVQFFVQALR YVRGLCLYYEDCIEKAVQFFVQALRMAPDH DCIEKAVQFFVQALRMAPDHEKACIACRNA K A V L R M 2 1 0 0 0 2 0 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1177.6608 Q99615;K7ESP1;K7EIH8;K7EPP7 Q99615 229 238 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.00070611 108.46 By MS/MS By MS/MS By matching 1 1 2 1.3071 1.1168 17.086 4 Median 1.0293 0.97117 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3992 1.4093 NaN 1 0 Median 1.3129 1.1168 12.688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37439000 17893000 19546000 26008000 13133000 12875000 0 0 0 9546900 3977100 5569800 1884100 782680 1101500 0 0 0 0 0 0 3579 3759 3727 18782;18783;18784;18785 19435;19436 19435 2 AVQFTEEK NVKKLAADAGTFLSRAVQFTEEKLGQAEKT AGTFLSRAVQFTEEKLGQAEKTELDAHLEN R A V E K L 1 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 8 0 950.47091 B7ZC38;Q9NR46;B7ZC39;F8WFB9;A0A087WW40;Q9Y371 A0A087WW40 22 29 SH3GLB2;SH3GLB1 Endophilin-B2;Endophilin-B1 no no 2 0.0086408 79.597 By MS/MS 1 1.1437 0.99363 NaN 1 Median NaN NaN NaN 0 0 Median 1.1437 0.99363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1361100 520570 840480 0 0 0 1361100 520570 840480 0 0 0 0 0 0 0 0 0 0 0 0 3580 52;641 3728 18786 19437 19437 1 AVQGAQQPSLYQIR SHFKRKFIIHRGKRKAVQGAQQPSLYQIRT KAVQGAQQPSLYQIRTNGSALCTRCIQINT K A V I R T 2 1 0 0 0 4 0 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 14 0 1557.8263 Q13045 Q13045 1047 1060 FLII Protein flightless-1 homolog yes yes 2 0.0004518 69.979 By MS/MS By matching By matching 1 1 1 1.0837 1.3313 33.033 3 Plateau 1.7492 1.6896 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9553 1.049 NaN 1 0 Median 1.0837 0.89584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9974100 4402500 5571500 6733300 2521200 4212200 0 0 0 3098400 1828200 1270300 142300 53195 89105 0 0 0 0 0 0 3581 2781 3729 18787;18788;18789 19438 19438 1 AVQGFFTSNNATR LPSTSRRLNHYVLYKAVQGFFTSNNATRDF YKAVQGFFTSNNATRDFLLPFLEEPMDTEA K A V T R D 2 1 2 0 0 1 0 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 13 0 1411.6844 O43242 O43242 116 128 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 7.1987E-41 187.99 By MS/MS By MS/MS 3 1 0.99906 0.95169 27.352 4 Median 0.9559 0.93144 31.384 3 1 Median 1.1247 0.97239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132750000 77265000 55484000 116980000 69946000 47032000 15771000 7318800 8452200 0 0 0 0 0 0 0 0 0 0 0 0 3582 1560 3730 18790;18791;18792;18793 19439;19440;19441;19442 19440 4 AVQGGGATPVVGAVQGPVPGMPPMTQAPR EKRKPKSQETPATKKAVQGGGATPVVGAVQ QGPVPGMPPMTQAPRIMHHMPGQPPYMPPP K A V P R I 4 1 0 0 0 3 0 6 0 0 0 0 2 0 6 0 2 0 0 5 0 0 29 0 2726.3996 P09012;M0R268;M0QZG7 P09012 124 152 SNRPA U1 small nuclear ribonucleoprotein A yes no 3 1.927E-09 51.119 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 3 1 0.43915 0.43877 74.361 9 Median 0.44907 0.41996 NaN 1 0 Median 0.62109 0.53457 NaN 1 0 Median 0.12495 0.1312 142.94 2 1 Median 0.54073 0.45418 NaN 1 0 Median 0.43915 0.4431 1.2373 3 2 Median 0.30778 0.28363 NaN 1 0 Median 99166000 78714000 20451000 10553000 7119000 3434100 451700 301190 150510 48260000 43497000 4762800 418100 220160 197940 39260000 27404000 11856000 222720 173040 49676 3583 1910 3731;3732 18794;18795;18796;18797;18798;18799;18800;18801;18802 19443;19444;19445;19446;19447;19448;19449 19449 686;687 7 AVQISKK ______________________________ ______________________________ M A V K K R 1 0 0 0 0 1 0 0 0 1 0 2 0 0 0 1 0 0 0 1 0 0 7 1 772.48069 P23396;E9PL09;E9PPU1;F2Z2S8;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 2 8 RPS3 40S ribosomal protein S3 yes no 2 0.02012 49.59 By MS/MS By matching By matching 1 2 1 1.1477 1.1227 12.123 4 Median 1.1981 1.1612 NaN 1 0 Median 1.2804 1.1644 20.118 2 0 Median 1.0567 1.0854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2016300 913950 1102300 888020 373190 514830 784540 349250 435290 343710 191510 152200 0 0 0 0 0 0 0 0 0 3584 2112 3733 18803;18804;18805;18806 19450 19450 1 AVQLKPRPPQGLVR APELGVFADFGNHTKAVQLKPRPPQGLVRV KAVQLKPRPPQGLVRVVGRPQPQLQYVDAL K A V V R V 1 2 0 0 0 2 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 2 1557.9467 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 661 674 MOGS Mannosyl-oligosaccharide glucosidase yes no 3 7.6771E-05 76.522 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.8762 0.9168 18.832 6 Median 0.66409 0.66987 NaN 1 0 Median 0.88533 1.0778 NaN 1 0 Median 0.8092 0.95212 NaN 1 0 Median 0.86716 0.88279 NaN 1 0 Median 0.95451 1.1166 NaN 1 0 Median 0.94968 0.8232 NaN 1 0 Median 22748000 12638000 10109000 4088500 2259700 1828800 2213100 1255500 957610 4410400 2350500 2059900 8382800 4837500 3545300 2948500 1586500 1362000 704260 348580 355690 3585 2835 3734 18807;18808;18809;18810;18811;18812 19451;19452;19453;19454 19454 4 AVQQVNAMIEK EAFGTTGFQATNFGRAVQQVNAMIEKKLEP NFGRAVQQVNAMIEKKLEPLSQDEDQHADL R A V E K K 2 0 1 0 0 2 1 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 11 0 1229.6438 Q5J8M5;A0A087WZK0;P49366;M0R253;M0QX43;A0A3B3IU31;B4E3M2 Q5J8M5 62 72 DHPS Deoxyhypusine synthase yes no 2 0.0036623 61.765 By MS/MS By MS/MS 1 1 1.2598 1.1282 0.093032 2 Median 1.2069 1.1274 NaN 1 0 Median 1.3149 1.1289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9823600 4154200 5669400 6015500 2531200 3484300 3808100 1623000 2185100 0 0 0 0 0 0 0 0 0 0 0 0 3586 95 3735 18813;18814 19455;19456 19455 2 AVQSLDKNGVDLLMK VLKVLISFKANDIEKAVQSLDKNGVDLLMK AVQSLDKNGVDLLMKYIYKGFESPSDNSSA K A V M K Y 1 0 1 2 0 1 0 1 0 0 3 2 1 0 0 1 0 0 0 2 0 0 15 1 1629.876 O15511;B1ALC0 O15511 94 108 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 2;3 0.00099592 73.781 By MS/MS 2 1.0538 1.075 4.4913 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0538 1.075 4.4913 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7981100 4231300 3749800 0 0 0 0 0 0 7981100 4231300 3749800 0 0 0 0 0 0 0 0 0 3587 1551 3736 18815;18816 19457;19458 19457 2 AVQTLQMELQQIMK SIHRIKRTAGDHPGRAVQTLQMELQQIMKG RAVQTLQMELQQIMKGNFSSFMQKEIFEQP R A V M K G 1 0 0 0 0 4 1 0 0 1 2 1 2 0 0 0 1 0 0 1 0 0 14 0 1659.8688 Q06210 Q06210 323 336 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 8.2691E-08 121.9 By matching By MS/MS By matching 2 4 1 1.3366 1.1681 55.869 7 Median 2.1657 2.0321 60.526 2 0 Median 1.0359 0.8734 22.556 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.863 2.3464 NaN 1 0 Median 42222000 19710000 22513000 11565000 4169100 7395700 30476000 15458000 15018000 0 0 0 0 0 0 0 0 0 181550 82816 98737 3588 2723 3737 18817;18818;18819;18820;18821;18822;18823 19459;19460 19460 2 AVQTSIATAYR MLQADSEKLRQAWIKAVQTSIATAYREKGD AWIKAVQTSIATAYREKGDESEKLDKKSSP K A V Y R E 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 2 0 1 1 0 0 11 0 1179.6248 A0A0U1RQT1;A0A087X1H5;Q15057;H7C3Q8 A0A0U1RQT1 362 372 ACAP2 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 yes no 2 0.00018859 94.692 By MS/MS By MS/MS By matching 1 1 1 1.8797 1.6347 72.989 3 Median 1.1527 1.114 NaN 1 0 Median 1.8797 1.6347 NaN 1 0 Median 3.4437 4.5699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18641000 4069900 14571000 3797900 1331100 2466800 2010600 651060 1359500 12832000 2087700 10744000 0 0 0 0 0 0 0 0 0 3589 120 3738 18824;18825;18826 19461;19462;19463 19462 3 AVQYNEPLK NMYGSQESLTKVFERAVQYNEPLKVFLHLA TKVFERAVQYNEPLKVFLHLADIYAKSEKF R A V L K V 1 0 1 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 0 1060.5553 Q14690;A0A3B3IUD7 Q14690 1684 1692 PDCD11 Protein RRP5 homolog yes no 2 0.024906 37.727 By MS/MS 1 0.92551 0.79311 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92551 0.79311 NaN 1 0 Median 1917300 876280 1041000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1917300 876280 1041000 3590 448 3739 18827 19464 19464 1 AVSDWIDEQEK EAVQNMVSHTERALKAVSDWIDEQEKGSSE RALKAVSDWIDEQEKGSSEQAESDNMDVPP K A V E K G 1 0 0 2 0 1 2 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 11 0 1318.6041 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6;K7EQ75 Q12906 44 54 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.00013404 118.18 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 4 2 1.0936 1.0023 24.713 15 Median 1.4566 1.3426 NaN 1 0 Median 0.92101 0.80178 39.827 2 0 Median 0.93819 1.0023 9.9011 3 0 Median 1.1264 0.9684 6.1989 3 0 Median 1.0796 1.1124 14.028 4 0 Median 0.78093 0.63211 5.4836 2 0 Median 168410000 82392000 86021000 6946800 2888900 4057900 6331300 2825500 3505700 92837000 46523000 46314000 10382000 4637100 5745000 42717000 20537000 22180000 9199600 4980200 4219400 3591 2769 3740 18828;18829;18830;18831;18832;18833;18834;18835;18836;18837;18838;18839;18840;18841;18842 19465;19466;19467;19468;19469;19470;19471;19472;19473;19474;19475;19476;19477 19470 13 AVSEEQQPALK HPPKPAKPEKNRINKAVSEEQQPALKGKKG RINKAVSEEQQPALKGKKGKEEKSKGKAKP K A V L K G 2 0 0 0 0 2 2 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1198.6194 Q8NE71;Q5STZ8;F5GYK6 Q8NE71 164 174 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.00016115 90.657 By matching By matching By MS/MS 1 2 1 0.99982 0.88809 26.076 4 Median 1.057 1.0669 NaN 1 0 Median 0.86408 0.75845 35.308 2 0 Median NaN NaN NaN 0 0 Median 0.9457 0.81014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9568700 4535800 5032900 1229700 695640 534080 5359000 2446200 2912800 0 0 0 2980000 1394000 1586100 0 0 0 0 0 0 3592 3427 3741 18843;18844;18845;18846 19478;19479 19479 2 AVSEGNLLLLHEALAK LLKKYHLMQFAEVTRAVSEGNLLLLHEALA VSEGNLLLLHEALAKHEAFFIRCGIFLILE R A V A K H 3 0 1 0 0 0 2 1 1 0 5 1 0 0 0 1 0 0 0 1 0 0 16 0 1676.9461 Q5JVF3 Q5JVF3 285 300 PCID2 PCI domain-containing protein 2 yes yes 3 0.00018125 43.798 By matching By MS/MS By matching By matching 1 2 1 1 0.93801 0.83315 11.194 5 Median 0.82819 0.7929 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8963 0.89225 11.629 2 0 Median 0.98912 0.83315 NaN 1 0 Median 1.0368 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median 24467000 13024000 11443000 1803300 880180 923130 0 0 0 21298000 11383000 9914700 366470 200870 165610 998930 559540 439390 0 0 0 3593 3057 3742 18847;18848;18849;18850;18851 19480 19480 1 AVSELELLGFIKPTK TSEEMNEIIHARFIRAVSELELLGFIKPTK AVSELELLGFIKPTKQKTDHVARLTWGGC_ R A V T K Q 1 0 0 0 0 0 2 1 0 1 3 2 0 1 1 1 1 0 0 1 0 0 15 1 1643.9498 Q9UBD5 Q9UBD5 683 697 ORC3 Origin recognition complex subunit 3 yes yes 3 0.001547 35.659 By MS/MS By matching By matching 1 1 2 1.0927 1.0847 11.859 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97368 1.0822 NaN 1 0 Median 1.1129 1.0872 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2638 1.1051 20.453 2 0 Median 15036000 7990200 7045900 0 0 0 0 0 0 14051000 7601600 6449500 202480 48430 154050 0 0 0 782440 340090 442350 3594 4236 3743 18852;18853;18854;18855 19481;19482 19482 2 AVSILGDEVFR DIIVMNVDLQSIHKKAVSILGDEVFRFQLT IHKKAVSILGDEVFRFQLTLYPDATEGEAY K A V F R F 1 1 0 1 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 2 0 0 11 0 1204.6452 Q709C8;A0A3B3IT88 Q709C8 1661 1671 VPS13C Vacuolar protein sorting-associated protein 13C yes no 2 0.0043727 48.091 By MS/MS By matching 1 1 0.44912 0.47095 5.9958 2 Median 0.4608 0.4514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.43774 0.49134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13123000 8004600 5118200 11617000 7010900 4606100 0 0 0 1505800 993750 512080 0 0 0 0 0 0 0 0 0 3595 3205 3744 18856;18857 19483 19483 1 AVSILPLLGHGVPR PSILKKTSAYGPPTRAVSILPLLGHGVPRL RAVSILPLLGHGVPRLPPGRKPPGPPPGPP R A V P R L 1 1 0 0 0 0 0 2 1 1 3 0 0 0 2 1 0 0 0 2 0 0 14 0 1427.8613 Q9Y2W2 Q9Y2W2 179 192 WBP11 WW domain-binding protein 11 yes yes 2;3 0.00064293 43.382 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.82751 0.77584 4.843 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71184 0.76109 8.1656 2 0 Median 0.9049 0.7756 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91587 0.77608 NaN 1 0 Median 9889400 5693600 4195800 0 0 0 0 0 0 8969500 5265000 3704500 769370 351140 418230 0 0 0 150430 77411 73023 3596 4394 3745 18858;18859;18860;18861;18862 19484;19485;19486;19487 19486 4 AVSISTEPPTYLR SEVEEILDGNDEKYKAVSISTEPPTYLREQ YKAVSISTEPPTYLREQKAKRNSQWVPTLP K A V L R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 2 2 2 0 1 1 0 0 13 0 1432.7562 G5E975;A0A0U1RQQ2;A0A2R8YEE8;Q12824;C9JTA6;A0A0G2JSE9;A0A0U1RRB8;A0A2R8Y5N5 Q12824 109 121 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 3.4597E-07 119.53 By MS/MS By MS/MS By MS/MS By matching 5 3 4 3 0.94532 0.80143 22.266 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68034 0.70208 22.703 4 0 Median 0.94965 0.80143 1.9244 3 0 Median 0.95639 0.95619 26.085 3 0 Median 1.0625 0.87432 24.16 3 0 Median 366140000 209310000 156840000 0 0 0 0 0 0 277580000 161950000 115640000 49838000 25935000 23903000 33339000 18703000 14636000 5382500 2723300 2659100 3597 1128;2761 3746 18863;18864;18865;18866;18867;18868;18869;18870;18871;18872;18873;18874;18875;18876;18877 19488;19489;19490;19491;19492;19493;19494;19495;19496;19497;19498;19499;19500;19501;19502;19503;19504;19505 19488 18 AVSKPSRPDMNPIR QHFNQRIQLAEKFVKAVSKPSRPDMNPIRV KAVSKPSRPDMNPIRVKEVYRLEEMEKIFV K A V I R V 1 2 1 1 0 0 0 0 0 1 0 1 1 0 3 2 0 0 0 1 0 0 14 2 1566.83 Q8N1G2;H0Y4T0 Q8N1G2 689 702 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes no 3 0.014104 24.935 By MS/MS By MS/MS 1 1 0.63648 0.6966 21.843 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5073 0.5969 NaN 1 0 Median 0.79855 0.81294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676600 2100100 1576400 0 0 0 0 0 0 2202100 1366400 835650 1474500 733710 740790 0 0 0 0 0 0 3598 3358 3747 18878;18879 19506;19507;19508 19508 3 AVSNINTLLDKADR CCAVDPIENEEDRKKAVSNINTLLDKADRV KAVSNINTLLDKADRVYHQLMGHRPQLENL K A V D R V 2 1 2 2 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 14 1 1528.8209 Q5T4S7 Q5T4S7 3735 3748 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 0.0001477 69.714 By MS/MS By matching 1 1 1.2841 1.2761 1.9591 2 Median 1.2118 1.2585 NaN 1 0 Median 1.3607 1.2939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13845000 6309500 7535500 11213000 5200100 6013300 2631600 1109400 1522200 0 0 0 0 0 0 0 0 0 0 0 0 3599 3089 3748 18880;18881 19509;19510 19510 2 AVSQIVTVYDK EMESQLQERVESSRRAVSQIVTVYDKLQEK SSRRAVSQIVTVYDKLQEKVELLSRKLNSG R A V D K L 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 0 1 3 0 0 11 0 1221.6605 Q5VTR2 Q5VTR2 184 194 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.00019593 75.294 By MS/MS By MS/MS 1 1 1.2269 1.067 10.527 2 Median NaN NaN NaN 0 0 Median 1.1271 0.99042 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3355 1.1494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6080400 2686700 3393800 0 0 0 2170000 1042200 1127800 0 0 0 3910500 1644500 2266000 0 0 0 0 0 0 3600 3112 3749 18882;18883 19511;19512;19513 19512 3 AVSQIVTVYDKLQEK EMESQLQERVESSRRAVSQIVTVYDKLQEK AVSQIVTVYDKLQEKVELLSRKLNSGDNLI R A V E K V 1 0 0 1 0 2 1 0 0 1 1 2 0 0 0 1 1 0 1 3 0 0 15 1 1719.9407 Q5VTR2 Q5VTR2 184 198 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 0.00030972 44.294 By MS/MS 1 1.1001 1.2701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1001 1.2701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9165500 4190400 4975100 0 0 0 0 0 0 9165500 4190400 4975100 0 0 0 0 0 0 0 0 0 3601 3112 3750 18884 19514;19515 19514 2 AVSREDSVKPGAHLTVK ARPHKVDGRVVEPKRAVSREDSVKPGAHLT SREDSVKPGAHLTVKKIFVGGIKEDTEEYN R A V V K K 2 1 0 1 0 0 1 1 1 0 1 2 0 0 1 2 1 0 0 3 0 0 17 2 1792.9795 P51991 P51991 110 126 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 1.058E-05 51.76 By matching By MS/MS By MS/MS 2 8 1 0.85417 0.99561 29.908 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.206 1.1886 2.4381 2 0 Median 0.83763 0.97344 31.375 8 0 Median 1.1773 1.0967 NaN 1 0 Median 97341000 51375000 45966000 0 0 0 0 0 0 0 0 0 2193100 913710 1279400 91500000 48395000 43105000 3647600 2066100 1581500 3602 2446 3751 18885;18886;18887;18888;18889;18890;18891;18892;18893;18894;18895 19516;19517;19518;19519;19520;19521;19522;19523 19521 8 AVSSAIAQLLGEVAQGNENYAGIAAR ETMEKCTQDLGNSTKAVSSAIAQLLGEVAQ EVAQGNENYAGIAARDVAGGLRSLAQAARG K A V A R D 7 1 2 0 0 2 2 3 0 2 2 0 0 0 0 2 0 0 1 2 0 0 26 0 2572.3245 Q9Y490 Q9Y490 1097 1122 TLN1 Talin-1 yes yes 3 0.064469 6.2273 By MS/MS By matching 1 3 1.129 0.97948 10.638 4 Median 0.92324 0.91349 NaN 1 0 Median 1.1725 1.0354 10.662 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4410800 2075400 2335400 2751400 1313200 1438200 1659400 762140 897240 0 0 0 0 0 0 0 0 0 0 0 0 3603 4441 3752 18896;18897;18898;18899 19524 19524 1 AVSSNVGAYMQPGAR SVKDKFNEALDIMNRAVSSNVGAYMQPGAR AVSSNVGAYMQPGARENIAYLTHTERRKDF R A V A R E 3 1 1 0 0 1 0 2 0 0 0 0 1 0 1 2 0 0 1 2 0 0 15 0 1506.7249 Q9UBB9 Q9UBB9 714 728 TFIP11 Tuftelin-interacting protein 11 yes yes 2 1.3845E-07 131.82 By matching By MS/MS By matching By matching By matching 1 1 1 2 1 0.90182 0.83252 26.142 6 Median NaN NaN NaN 0 0 Median 1.266 1.1581 NaN 1 0 Median 0.76496 0.81507 NaN 1 0 Median 1.5161 1.2999 NaN 1 0 Median 0.6627 0.71589 15.861 2 0 Median 1.0443 0.85035 NaN 1 0 Median 19585000 10577000 9008000 0 0 0 544670 225320 319350 6225100 2989000 3236100 795660 322180 473480 10329000 6127100 4201900 1690600 913410 777200 3604 4235 3753 18900;18901;18902;18903;18904;18905 19525 19525 1 AVSSQMIGK LKGGVKIVFSPEEAKAVSSQMIGKKLFTKQ SPEEAKAVSSQMIGKKLFTKQTGEKGRICN K A V G K K 1 0 0 0 0 1 0 1 0 1 0 1 1 0 0 2 0 0 0 1 0 0 9 0 919.4797 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;Q5T9Q5;A0A0U1RQF8;A0A2R8Y5P6;A0A2R8Y6E6 A0A2R8YDQ9 72 80 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.013814 45.081 By MS/MS By matching By matching 1 1 1 1.0788 1.145 20.858 3 Median NaN NaN NaN 0 0 Median 1.7781 1.5334 NaN 1 0 Median 0.97154 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0788 1.145 NaN 1 0 Median NaN NaN NaN 0 0 Median 6026300 2489300 3537100 0 0 0 2222000 842060 1379900 1479600 716330 763270 0 0 0 2324800 930890 1393900 0 0 0 3605 379 3754 18906;18907;18908 19526 19526 1 AVSTGLPHMIQELQNHIHDEGLR QEKKNDMANMYVLLRAVSTGLPHMIQELQN MIQELQNHIHDEGLRATSNLTQENMPTLFV R A V L R A 1 1 1 1 0 2 2 2 3 2 3 0 1 0 1 1 1 0 0 1 0 0 23 0 2594.3024 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 316 338 CUL2 Cullin-2 yes no 4 0.0085707 20.199 By MS/MS By matching 2 1 1.1102 0.95971 16.713 3 Plateau NaN NaN NaN 0 0 Median 0.99835 0.86995 13.887 2 0 Median 0.98077 1.0996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13634000 6325300 7308800 0 0 0 12874000 5972900 6901600 759670 352450 407220 0 0 0 0 0 0 0 0 0 3606 196 3755 18909;18910;18911 19527;19528 19527 2 AVSTGVKVPR ______________________________ ______________________________ M A V P R N 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 0 3 0 0 10 1 1012.6029 Q15819 Q15819 2 11 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes yes 2 0.019848 83.265 By MS/MS 2 1.2034 1.194 17.496 2 Median 1.2034 1.194 17.496 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8983100 4610300 4372800 8983100 4610300 4372800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3607 2973 3756 18912;18913 19529;19530 19530 2 AVSTHQITQLEGDRR NLKEKIALLKDLLLRAVSTHQITQLEGDRR AVSTHQITQLEGDRRQNLLDDLVTRERLLL R A V R R Q 1 2 0 1 0 2 1 1 1 1 1 0 0 0 0 1 2 0 0 1 0 0 15 1 1709.8809 I3L305;Q9UNK0 I3L305 65 79 STX8 Syntaxin-8 yes no 4 0.00070061 37.55 By MS/MS 1 1.3866 1.1776 NaN 1 Median NaN NaN NaN 0 0 Median 1.3866 1.1776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1003300 443040 560260 0 0 0 1003300 443040 560260 0 0 0 0 0 0 0 0 0 0 0 0 3608 1286 3757 18914 19531;19532 19531 2 AVSTLIDSLKK PLPRQQVTEIIFVLKAVSTLIDSLKKTQPE FVLKAVSTLIDSLKKTQPENVDGNTWAQVI K A V K K T 1 0 0 1 0 0 0 0 0 1 2 2 0 0 0 2 1 0 0 1 0 0 11 1 1173.6969 A0A286YFF8;Q7Z3U7 A0A286YFF8 1649 1659 MON2 Protein MON2 homolog yes no 2 0.026618 35.541 By MS/MS By matching 1 1 0.92248 0.90128 4.6591 2 Median 0.88963 0.87207 NaN 1 0 Median 0.95653 0.93146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7301600 4053800 3247800 6084000 3447400 2636700 1217600 606440 611180 0 0 0 0 0 0 0 0 0 0 0 0 3609 353 3758 18915;18916 19533 19533 1 AVSVTPIR ______________________________ ______________________________ M A V I R D 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 C9JP00;A0A0A0MQX8;Q9NR56 C9JP00 2 9 MBNL1 Muscleblind-like protein 1 yes no 2 0.037995 53.71 By MS/MS By MS/MS By MS/MS 2 1 2 0.014742 0.014881 169.51 5 Median 0.017048 0.016408 178.24 2 2 Median 0.0042535 0.0034403 NaN 1 1 Median 0.053206 0.053128 179.98 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 208970000 204970000 4004900 137950000 136880000 1065200 14506000 14409000 97045 56519000 53676000 2842600 0 0 0 0 0 0 0 0 0 3610 150 3759 18917;18918;18919;18920;18921 19534;19535;19536;19537;19538 19535 5 AVSVTPIRDTK ______________________________ ______________________________ M A V T K W 1 1 0 1 0 0 0 0 0 1 0 1 0 0 1 1 2 0 0 2 0 0 11 1 1185.6717 C9JP00;A0A0A0MQX8;Q9NR56 C9JP00 2 12 MBNL1 Muscleblind-like protein 1 yes no 2 2.9647E-05 152.38 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 5 4 2 0.92047 0.91011 15.089 14 Median 1.0156 1.0883 NaN 1 0 Median 0.85874 0.77375 17.391 2 0 Median 0.8314 0.94663 16.211 5 3 Median 0.95951 0.91213 11.911 4 0 Median 0.8616 0.92144 15.416 2 0 Median NaN NaN NaN 0 0 Median 102370000 53443000 48923000 11761000 5518200 6242600 3960800 2225200 1735600 51168000 28047000 23122000 27472000 12960000 14512000 8004100 4693300 3310800 0 0 0 3611 150 3760 18922;18923;18924;18925;18926;18927;18928;18929;18930;18931;18932;18933;18934;18935 19539;19540;19541;19542;19543;19544;19545;19546;19547;19548;19549;19550 19546 12 AVTAIMTR PENMDSQQLVSLVQKAVTAIMTRLHNLAQF LVSLVQKAVTAIMTRLHNLAQFEGGESKVN K A V T R L 2 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 8 0 861.47422 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3803 3810 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0035841 87.323 By MS/MS By MS/MS 1 1 1.4212 1.375 7.4715 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2116 1.3042 NaN 1 0 Median 1.667 1.4496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5622500 2288700 3333800 0 0 0 0 0 0 4914100 1999100 2915000 708420 289570 418860 0 0 0 0 0 0 3612 991 3761 18936;18937 19551;19552;19553 19552 3 AVTDAIMSR FAIRPMYLAMRQFKKAVTDAIMSRRAIRNM MRQFKKAVTDAIMSRRAIRNMNTLYPDATP K A V S R R 2 1 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 9 0 962.48552 Q86TM6;E9PMA1 Q86TM6 258 266 SYVN1 E3 ubiquitin-protein ligase synoviolin yes no 2 0.001584 79.906 By MS/MS 1 1.5826 1.2807 NaN 1 Median NaN NaN NaN 0 0 Median 1.5826 1.2807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11742000 4380600 7361300 0 0 0 11742000 4380600 7361300 0 0 0 0 0 0 0 0 0 0 0 0 3613 3268 3762 18938 19554;19555 19555 2 AVTDEEPFLIFANR VEGYAPRGGDPHSCKAVTDEEPFLIFANRY KAVTDEEPFLIFANRYYLRKLNLDGSNYTL K A V N R Y 2 1 1 1 0 0 2 0 0 1 1 0 0 2 1 0 1 0 0 1 0 0 14 0 1620.8148 Q07954 Q07954 3023 3036 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 1.4029E-05 87.298 By MS/MS 1 0.5945 0.59413 NaN 1 Median 0.5945 0.59413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5630900 3456800 2174100 5630900 3456800 2174100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3614 2733 3763 18939 19556;19557 19557 2 AVTEILQDIQYK IALFVQIGKEHVGLKAVTEILQDIQYKGKS GLKAVTEILQDIQYKGKSKTIPCFNPNTLL K A V Y K G 1 0 0 1 0 2 1 0 0 2 1 1 0 0 0 0 1 0 1 1 0 0 12 0 1419.7609 P35219 P35219 181 192 CA8 Carbonic anhydrase-related protein yes yes 2 0.010147 37.191 By MS/MS 2 1.0963 0.92723 14.861 2 Median NaN NaN NaN 0 0 Median 1.0963 0.92723 14.861 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8083700 4040300 4043400 0 0 0 8083700 4040300 4043400 0 0 0 0 0 0 0 0 0 0 0 0 3615 2231 3764 18940;18941 19558 19558 1 AVTELNEPLSNEDR AEQAERYDDMASAMKAVTELNEPLSNEDRN KAVTELNEPLSNEDRNLLSVAYKNVVGARR K A V D R N 1 1 2 1 0 0 3 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1585.7584 Q04917 Q04917 29 42 YWHAH 14-3-3 protein eta yes yes 2 3.1718E-82 254.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 0.77804 0.72041 20.397 8 Median 0.56975 0.60403 46.176 2 0 Median 0.80244 0.68304 16.029 2 0 Median 0.77704 0.74627 0.69809 2 2 Median 0.84333 0.69888 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77521 0.62413 NaN 1 0 Median 192060000 105830000 86226000 95332000 54093000 41239000 39406000 19008000 20399000 49384000 28147000 21237000 2917700 1464300 1453400 0 0 0 5019600 3121400 1898300 3616 2714 3765 18942;18943;18944;18945;18946;18947;18948;18949 19559;19560;19561;19562;19563;19564;19565 19563 7 AVTELNEPLSNEDRNLLSVAYK AEQAERYDDMASAMKAVTELNEPLSNEDRN PLSNEDRNLLSVAYKNVVGARRSSWRVISS K A V Y K N 2 1 3 1 0 0 3 0 0 0 4 1 0 0 1 2 1 0 1 2 0 0 22 1 2474.2653 Q04917 Q04917 29 50 YWHAH 14-3-3 protein eta yes yes 3 2.8617E-12 67.866 By MS/MS By matching By matching By matching 1 1 1 1 0.97909 0.94043 7.2888 4 Median 0.82727 0.85959 NaN 1 0 Median 0.98897 0.91469 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0923 0.96689 NaN 1 0 Median 0.96931 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median 65786000 33326000 32460000 55811000 28427000 27383000 8787500 4353700 4433800 0 0 0 320040 146560 173490 867940 398700 469230 0 0 0 3617 2714 3766 18950;18951;18952;18953 19566;19567 19567 2 AVTEMNGR GFGFVCFSSPEEATKAVTEMNGRIVATKPL SPEEATKAVTEMNGRIVATKPLYVALAQRK K A V G R I 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 8 0 876.41235 B1ANR0;Q13310;H0Y5F5;H0YEU6;P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;Q4VXU2;H0YB86 P11940 349 356 PABPC4;PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.016506 49.358 By MS/MS 1 1.0492 0.90501 NaN 1 Median NaN NaN NaN 0 0 Median 1.0492 0.90501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1241500 578570 662930 0 0 0 1241500 578570 662930 0 0 0 0 0 0 0 0 0 0 0 0 3618 1973;576;1151 3767 18954 19568 19568 1 AVTEQGAELSNEER AEQAERYDDMATCMKAVTEQGAELSNEERN KAVTEQGAELSNEERNLLSVAYKNVVGGRR K A V E R N 2 1 1 0 0 1 4 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1531.7114 P27348;E9PG15 P27348 28 41 YWHAQ 14-3-3 protein theta yes no 2;3 8.2779E-43 220.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 2 1 3 1.1738 0.99885 21.136 18 Median 1.0947 1.0325 13.156 4 0 Median 1.1102 0.94614 12.635 6 1 Median 1.0667 1.0136 15.12 2 1 Median 1.6451 1.3713 47.733 2 1 Median 1.1182 1.1021 NaN 1 0 Median 1.5867 1.2281 18.544 3 0 Median 314140000 140830000 173310000 136720000 61497000 75218000 83668000 36575000 47094000 64956000 30220000 34737000 20121000 8634700 11486000 2610800 1170800 1440000 6067200 2731300 3335900 3619 2152 3768 18955;18956;18957;18958;18959;18960;18961;18962;18963;18964;18965;18966;18967;18968;18969;18970;18971;18972 19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597;19598;19599 19597 31 AVTEQGHELSNEER AEQAERYDDMAAAMKAVTEQGHELSNEERN KAVTEQGHELSNEERNLLSVAYKNVVGARR K A V E R N 1 1 1 0 0 1 4 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1597.7332 P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2 P31946 30 43 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2;3 4.4548E-08 128.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 3 1 2 1.1571 1.0166 9.3805 19 Median 1.0535 1.0267 5.0745 5 0 Median 1.1553 0.99511 13.233 6 1 Median 1.0153 0.97521 2.8523 2 0 Median 1.2042 0.99809 11.605 3 0 Median 1.1881 1.1674 NaN 1 0 Median 1.2626 1.0582 1.1535 2 0 Median 222500000 101700000 120800000 92916000 43609000 49306000 59880000 26191000 33689000 48698000 22632000 26066000 16391000 7422100 8968500 2062000 810940 1251100 2554500 1038900 1515600 3620 2210 3769 18973;18974;18975;18976;18977;18978;18979;18980;18981;18982;18983;18984;18985;18986;18987;18988;18989;18990;18991 19600;19601;19602;19603;19604;19605;19606;19607;19608;19609;19610;19611;19612;19613;19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628;19629;19630 19619 31 AVTEVLAR DDFKEMEKKVDVTSKAVTEVLARTIEYLQP KVDVTSKAVTEVLARTIEYLQPNPASRAKL K A V A R T 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 857.49707 Q99961;M0QYE0;M0R0I3;M0R2K6 Q99961 46 53 SH3GL1 Endophilin-A2 yes no 2 0.0065188 70.912 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.96874 0.89807 26.293 6 Median 0.98653 0.9937 7.239 2 0 Median 0.98939 0.85427 NaN 1 0 Median 0.57236 0.57568 NaN 1 0 Median 0.66872 0.58037 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1247 0.95374 NaN 1 0 Median 14785000 7555900 7229000 3149700 1522300 1627400 3046800 1467400 1579400 3237200 1796300 1440900 4401600 2403900 1997800 0 0 0 949600 366020 583580 3621 3774 3770 18992;18993;18994;18995;18996;18997 19631;19632;19633;19634 19634 4 AVTFSPDLGPVPHEGLGEYNR RPAGEGQGEPTSRPKAVTFSPDLGPVPHEG DLGPVPHEGLGEYNRAVSKLSAALSSLQRD K A V N R A 1 1 1 1 0 0 2 3 1 0 2 0 0 1 3 1 1 0 1 2 0 0 21 0 2254.1018 Q9P1Y5 Q9P1Y5 681 701 CAMSAP3 Calmodulin-regulated spectrin-associated protein 3 yes yes 3 1.5136E-07 49.973 By MS/MS 1 0.56929 0.54467 NaN 1 Median 0.56929 0.54467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4862600 2794700 2068000 4862600 2794700 2068000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3622 4211 3771 18998 19635 19635 1 AVTGTHTLALAAK VIIGTKTILANGALRAVTGTHTLALAAKHH LRAVTGTHTLALAAKHHSTPLIVCAPMFKL R A V A K H 4 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 3 0 0 1 0 0 13 0 1252.7139 P49770;H0YK01 P49770 247 259 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 2;3 0.00025204 62.14 By matching By MS/MS By MS/MS 2 3 2 1.0456 0.97461 23.763 7 Median 0.98297 0.92181 8.7191 2 0 Median 1.1337 0.97461 34.518 3 0 Median NaN NaN NaN 0 0 Median 1.1817 1.0005 17.029 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17406000 8397100 9008900 6388900 3085200 3303700 4600400 2515200 2085200 0 0 0 6416600 2796700 3620000 0 0 0 0 0 0 3623 2398 3772 18999;19000;19001;19002;19003;19004;19005 19636;19637;19638;19639;19640;19641 19640 6 AVTGYKDPYTGQQISLFQAMQK VVGPELHHKLLSAERAVTGYKDPYTGQQIS PYTGQQISLFQAMQKGLIVREHGIRLLEAQ R A V Q K G 2 0 0 1 0 4 0 2 0 1 1 2 1 1 1 1 2 0 2 1 0 0 22 1 2473.2311 Q15149;H0YDN1 Q15149 2910 2931 PLEC Plectin yes no 3 4.9479E-15 95.5 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0238 1.0701 78.648 5 Median 1.0238 1.1141 NaN 1 0 Median 1.0806 1.0269 NaN 1 0 Median 0.43716 0.49546 132.67 2 0 Median NaN NaN NaN 0 0 Median 0.99402 1.0701 NaN 1 0 Median NaN NaN NaN 0 0 Median 60734000 30953000 29780000 40285000 19722000 20563000 1590100 759180 830930 10830000 6113000 4717300 0 0 0 8028100 4359600 3668500 0 0 0 3624 2933 3773 19006;19007;19008;19009;19010 19642;19643;19644;19645;19646;19647 19643 6 AVTGYNDPETGNIISLFQAMNK LVGIEFKEKLLSAERAVTGYNDPETGNIIS PETGNIISLFQAMNKELIEKGHGIRLLEAQ R A V N K E 2 0 3 1 0 1 1 2 0 2 1 1 1 1 1 1 2 0 1 1 0 0 22 0 2382.1526 P15924 P15924 2335 2356 DSP Desmoplakin yes yes 2;3 0.00019786 28.813 By MS/MS By matching By matching By MS/MS 4 2 3 2 0.65054 0.62772 18.437 11 Median 0.60126 0.58047 12.417 4 0 Median 0.81684 0.72303 7.3145 2 0 Median 0.60257 0.66816 16.647 3 0 Median NaN NaN NaN 0 0 Median 0.53305 0.53138 32.519 2 0 Median NaN NaN NaN 0 0 Median 13032000 7881600 5150400 7937900 4849400 3088500 1170700 705150 465510 1858700 1082400 776360 0 0 0 2064700 1244700 820020 0 0 0 3625 2021 3774 19011;19012;19013;19014;19015;19016;19017;19018;19019;19020;19021 19648;19649;19650 19648 3 AVTGYRDPYSGSTISLFQAMQK VVGPELHEQLLSAEKAVTGYRDPYSGSTIS PYSGSTISLFQAMQKGLVLRQHGIRLLEAQ K A V Q K G 2 1 0 1 0 2 0 2 0 1 1 1 1 1 1 3 2 0 2 1 0 0 22 1 2419.1842 Q15149;H0YDN1 Q15149 3569 3590 PLEC Plectin yes no 3 3.1938E-12 66.325 By MS/MS By matching By matching 1 1 1 1.1497 1.1928 22.587 3 Plateau 1.1497 1.1928 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0075 1.1618 NaN 1 0 Median 0.91631 0.79658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11153000 4144300 7008800 10226000 3709500 6516000 0 0 0 744580 349050 395530 183010 85832 97175 0 0 0 0 0 0 3626 2933 3775 19022;19023;19024 19651;19652 19652 2 AVTGYRDPYTEQTISLFQAMK LVGPELHDRLLSAERAVTGYRDPYTEQTIS DPYTEQTISLFQAMKKELIPTEEALRLLDA R A V M K K 2 1 0 1 0 2 1 1 0 1 1 1 1 1 1 1 3 0 2 1 0 0 21 1 2418.1889 Q15149;H0YDN1 Q15149 3904 3924 PLEC Plectin yes no 3 2.6985E-12 78.088 By MS/MS By MS/MS By matching 1 1 1 1.0004 1.0435 20.802 3 Median 1.0004 1.0435 NaN 1 0 Median 0.9066 0.87673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1756 1.3268 NaN 1 0 Median NaN NaN NaN 0 0 Median 18833000 9302000 9531200 16537000 8140000 8397200 1643900 846840 797070 0 0 0 0 0 0 652150 315170 336980 0 0 0 3627 2933 3776 19025;19026;19027 19653;19654;19655;19656 19654 4 AVTGYRDPYTGQSVSLFQALK LVGPEFHEKLLSAEKAVTGYRDPYTGQSVS DPYTGQSVSLFQALKKGLIPREQGLRLLDA K A V L K K 2 1 0 1 0 2 0 2 0 0 2 1 0 1 1 2 2 0 2 2 0 0 21 1 2300.1801 Q15149;H0YDN1 Q15149 3238 3258 PLEC Plectin yes no 3 0.073338 7.0315 By MS/MS 2 0.91403 0.92633 21.183 2 Median 0.91403 0.92633 21.183 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24181000 11939000 12242000 24181000 11939000 12242000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3628 2933 3777 19028;19029 19657 19657 1 AVTGYTDPYTGQQISLFQAMQK VIGPDVFAKLLSAERAVTGYTDPYTGQQIS PYTGQQISLFQAMQKGLIVREHGIRLLEAQ R A V Q K G 2 0 0 1 0 4 0 2 0 1 1 1 1 1 1 1 3 0 2 1 0 0 22 0 2446.1839 P58107;A0A075B730 P58107 687 708 EPPK1 Epiplakin yes no 2;3 3.9009E-26 145.43 By MS/MS By MS/MS By matching By matching 8 8 1 3 1.1376 1.1361 12.599 19 Median 1.1638 1.1484 9.2316 8 0 Median 1.1053 0.96505 13.283 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1649 1.2335 4.9245 3 0 Median NaN NaN NaN 0 0 Median 448920000 204170000 244750000 419060000 190420000 228640000 21257000 9720900 11536000 356290 224630 131670 0 0 0 8243000 3806300 4436600 0 0 0 3629 2520 3778;3779 19030;19031;19032;19033;19034;19035;19036;19037;19038;19039;19040;19041;19042;19043;19044;19045;19046;19047;19048;19049 19658;19659;19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678 19663 1197 21 AVTHTSPEDVSFAESR FLLKGRLQQVLTGLRAVTHTSPEDVSFAES VTHTSPEDVSFAESRRDGLKAIARICQTVG R A V S R R 2 1 0 1 0 0 2 0 1 0 0 0 0 1 1 3 2 0 0 2 0 0 16 0 1731.8064 Q9BTW9;J3KR97;I3L439;A0A0J9YVR1;A0A0J9YWI5;A0A0J9YVU1 Q9BTW9 800 815 TBCD Tubulin-specific chaperone D yes no 2;3 3.0997E-05 78.692 By MS/MS By MS/MS 2 1 1.0636 0.90637 19.956 3 Median 0.9036 0.87341 28.059 2 1 Median 1.0636 0.90637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15454000 8665800 6788300 12126000 7075100 5050600 3328400 1590700 1737700 0 0 0 0 0 0 0 0 0 0 0 0 3630 1324 3780 19050;19051;19052 19679;19680;19681;19682 19681 4 AVTHTSPEDVSFAESRR FLLKGRLQQVLTGLRAVTHTSPEDVSFAES THTSPEDVSFAESRRDGLKAIARICQTVGV R A V R R D 2 2 0 1 0 0 2 0 1 0 0 0 0 1 1 3 2 0 0 2 0 0 17 1 1887.9075 Q9BTW9;J3KR97;I3L439;A0A0J9YVR1;A0A0J9YWI5;A0A0J9YVU1 Q9BTW9 800 816 TBCD Tubulin-specific chaperone D yes no 3 0.077548 3.7796 By MS/MS 1 0.78497 0.87212 NaN 1 Median 0.78497 0.87212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1667700 819810 847880 1667700 819810 847880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3631 1324 3781 19053 19683 19683 1 AVTIANSPSK HNSKEKIAKMEHGPKAVTIANSPSKPSEKD EHGPKAVTIANSPSKPSEKDSVVSLESQKT K A V S K P 2 0 1 0 0 0 0 0 0 1 0 1 0 0 1 2 1 0 0 1 0 0 10 0 986.53966 Q8NEF9 Q8NEF9 197 206 SRFBP1 Serum response factor-binding protein 1 yes yes 2 0.011248 42.869 By MS/MS By MS/MS By MS/MS 1 1 1 1.0953 0.97802 6.3507 3 Median 1.0771 0.97802 NaN 1 0 Median 1.1077 0.92896 NaN 1 0 Median 1.0953 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57468000 28227000 29241000 24024000 10538000 13487000 22004000 12307000 9697100 11440000 5382000 6057800 0 0 0 0 0 0 0 0 0 3632 3429 3782 19054;19055;19056 19684;19685;19686;19687;19688 19688 5 AVTIFIR TKDKMLVIEQCKNSRAVTIFIRGGNKMIIE IEQCKNSRAVTIFIRGGNKMIIEEAKRSLH R A V I R G 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 7 0 818.50142 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 382 388 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0027798 106.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 2 2 3 1.3994 1.2451 22.017 14 Median 1.3496 1.2657 6.7257 3 0 Median 1.2813 1.1052 10.589 3 0 Median 1.4501 1.457 NaN 1 0 Median 1.3713 1.1705 11.771 2 0 Median 2.0336 2.0558 10.583 2 0 Median 1.3568 1.0995 1.3194 3 0 Median 146330000 63093000 83233000 60845000 26676000 34170000 66555000 29086000 37468000 10199000 3820500 6378000 1379700 531430 848270 3134200 1109500 2024700 4214300 1869900 2344400 3633 2364 3783 19057;19058;19059;19060;19061;19062;19063;19064;19065;19066;19067;19068;19069;19070 19689;19690;19691;19692;19693;19694;19695;19696 19690 8 AVTLDKDAYYR ______________________________ ______________________________ M A V Y R R 2 1 0 2 0 0 0 0 0 0 1 1 0 0 0 0 1 0 2 1 0 0 11 1 1313.6616 Q9Y5B9;G3V5A4;G3V401;G3V2X0 Q9Y5B9 2 12 SUPT16H FACT complex subunit SPT16 yes no 2 6.0951E-47 195.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 3 2 2 1.2295 1.2689 24.604 10 Median 0.9872 1.0133 34.566 2 2 Median NaN NaN NaN 0 0 Median 1.3617 1.5793 NaN 1 0 Median 1.0699 1.0282 18.95 3 1 Median 1.389 1.5237 12.325 2 0 Median 1.3222 1.1852 14.494 2 0 Median 92344000 41759000 50585000 43707000 21494000 22213000 0 0 0 12953000 6341700 6610800 6572300 2923100 3649200 25474000 9504000 15970000 3638200 1496500 2141700 3634 4456 3784 19071;19072;19073;19074;19075;19076;19077;19078;19079;19080;19081;19082;19083 19697;19698;19699;19700;19701;19702;19703;19704;19705;19706 19697 9 AVTLDKDAYYRR ______________________________ ______________________________ M A V R R V 2 2 0 2 0 0 0 0 0 0 1 1 0 0 0 0 1 0 2 1 0 0 12 2 1469.7627 Q9Y5B9;G3V5A4;G3V401;G3V2X0 Q9Y5B9 2 13 SUPT16H FACT complex subunit SPT16 yes no 3 0.00028334 60.49 By MS/MS 1 1.5643 1.7168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5643 1.7168 NaN 1 0 Median NaN NaN NaN 0 0 Median 11130000 3453100 7677000 0 0 0 0 0 0 0 0 0 0 0 0 11130000 3453100 7677000 0 0 0 3635 4456 3785 19084 19707 19707 1 AVTLHDQGTAQWADLSSQFYLR LGVEIAKNIILGGVKAVTLHDQGTAQWADL GTAQWADLSSQFYLREEDIGKNRAEVSQPR K A V L R E 3 1 0 2 0 3 0 1 1 0 3 0 0 1 0 2 2 1 1 1 0 0 22 0 2506.2241 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 98 119 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 1.6574E-13 84.946 By MS/MS 3 0.98311 0.94707 65.312 3 Median 0.98311 0.94707 65.312 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15549000 7878900 7670200 15549000 7878900 7670200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3636 2100 3786 19085;19086;19087 19708;19709 19709 2 AVTPVPTKTEEVSNLK QHYQKETESAPGSPRAVTPVPTKTEEVSNL VTPVPTKTEEVSNLKTLPKGLSASLPDLDS R A V L K T 1 0 1 0 0 0 2 0 0 0 1 2 0 0 2 1 3 0 0 3 0 0 16 1 1711.9356 Q6PKG0;A0A0B4J210;E5RH50;H0YBW1 Q6PKG0 524 539 LARP1 La-related protein 1 yes no 3 3.5661E-05 68.919 By MS/MS By matching 1 1 0.76023 0.75264 13.861 2 Median 0.79353 0.83014 NaN 1 0 Median 0.72833 0.68237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15665000 10895000 4769300 14124000 10031000 4093400 1540300 864380 675930 0 0 0 0 0 0 0 0 0 0 0 0 3637 3176 3787 19088;19089 19710;19711 19710 2 AVTQALNR PGDPESQQRLAQVAKAVTQALNRCVSCLPG RLAQVAKAVTQALNRCVSCLPGQRDVDNAL K A V N R C 2 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 871.48756 Q9Y490 Q9Y490 1191 1198 TLN1 Talin-1 yes yes 2 0.0060114 73.039 By MS/MS By MS/MS 1 1 1.2463 1.1646 54.013 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6322 1.7062 NaN 1 1 Median 0.95169 0.79489 NaN 1 0 Median 2693200 1223800 1469400 0 0 0 0 0 0 0 0 0 0 0 0 1421100 579970 841090 1272200 643860 628330 3638 4441 3788 19090;19091 19712;19713 19713 2 AVTQISVDLMDDYPASDPR FSSHSDLDSDSELDRAVTQISVDLMDDYPA ISVDLMDDYPASDPRWAESVPEEAPGFSNT R A V P R W 2 1 0 4 0 1 0 0 0 1 1 0 1 0 2 2 1 0 1 2 0 0 19 0 2091.9783 Q8WUM0 Q8WUM0 560 578 NUP133 Nuclear pore complex protein Nup133 yes yes 2 3.2832E-06 53.252 By MS/MS 1 0.89892 0.98755 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89892 0.98755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3348000 1399500 1948500 0 0 0 0 0 0 3348000 1399500 1948500 0 0 0 0 0 0 0 0 0 3639 3492 3789 19092 19714;19715 19715 2 AVTSGHYVLSESQSELEEK TDSGVATPVTTGQVKAVTSGHYVLSESQSE GHYVLSESQSELEEKQTSALSGGVQVEPPA K A V E K Q 1 0 0 0 0 1 4 1 1 0 2 1 0 0 0 4 1 0 1 2 0 0 19 0 2091.996 Q9NQV6;E9PLV1;E9PRS0 Q9NQV6 1077 1095 PRDM10 PR domain zinc finger protein 10 yes no 3 6.2436E-14 106.93 By MS/MS 1 0.87752 0.93664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87752 0.93664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14519000 8696800 5822100 0 0 0 0 0 0 14519000 8696800 5822100 0 0 0 0 0 0 0 0 0 3640 963 3790 19093 19716 19716 1 AVTTVTQSTPVPGPSVPK SSSAITTTVSSTLTRAVTTVTQSTPVPGPS TVTQSTPVPGPSVPKISSMTETAPRALTTE R A V P K I 1 0 0 0 0 1 0 1 0 0 0 1 0 0 4 2 4 0 0 4 0 0 18 0 1764.9622 A6NEM2 A6NEM2 1483 1500 HCFC1 yes yes 2 9.6695E-06 55.314 By MS/MS By MS/MS 1 1 0.60478 0.58114 4.834 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51006 0.56161 NaN 1 0 Median 0.71708 0.60135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5092100 3322200 1769900 0 0 0 0 0 0 3921100 2608900 1312200 1171000 713370 457670 0 0 0 0 0 0 3641 509 3791 19094;19095 19717;19718 19717 2 AVTTVTQSTPVPGPSVPPPEELQVSPGPR SSSAITTTVSSTLTRAVTTVTQSTPVPGPS SVPPPEELQVSPGPRQQLPPRQLLQSASTA R A V P R Q 1 1 0 0 0 2 2 2 0 0 1 0 0 0 8 3 4 0 0 5 0 0 29 0 2923.5291 P51610;H7C1C4 P51610 1483 1511 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes no 3 2.5639E-06 44.264 By MS/MS By MS/MS 1 1 0.24549 0.25996 13.845 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22273 0.23572 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.27058 0.2867 NaN 1 1 Median NaN NaN NaN 0 0 Median 26556000 23302000 3253600 0 0 0 0 0 0 23901000 21019000 2882700 0 0 0 2654600 2283700 370910 0 0 0 3642 2438 3792 19096;19097 19719;19720;19721 19720 3 AVTVMMDPNSTQR MAMDQVNALCEQLVKAVTVMMDPNSTQRYR VKAVTVMMDPNSTQRYRLEALKFCEEFKEK K A V Q R Y 1 1 1 1 0 1 0 0 0 0 0 0 2 0 1 1 2 0 0 2 0 0 13 0 1448.6752 Q9HAV4;E2QRM3 Q9HAV4 16 28 XPO5 Exportin-5 yes no 2 6.7811E-07 104.52 By MS/MS By MS/MS 1 1 0.93116 0.83769 2.8423 2 Median 0.85097 0.82103 NaN 1 0 Median 1.0189 0.8547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15886000 7560500 8326000 8116800 4016400 4100500 7769600 3544100 4225500 0 0 0 0 0 0 0 0 0 0 0 0 3643 4012 3793 19098;19099 19722;19723;19724;19725 19723 4 AVTVYDKPASFFK TNAMREDLADNWHIRAVTVYDKPASFFKET IRAVTVYDKPASFFKETPLDLQHRLFMKLG R A V F K E 2 0 0 1 0 0 0 0 0 0 0 2 0 2 1 1 1 0 1 2 0 0 13 1 1471.7711 Q9BT22;K7EID2 Q9BT22 211 223 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 3 0.00044567 54.524 By MS/MS By matching 2 1 1.214 1.2095 1.3787 3 Median 1.1852 1.216 0.76663 2 0 Median 1.214 1.1896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12087000 5568700 6518600 11585000 5339700 6245100 502480 228950 273520 0 0 0 0 0 0 0 0 0 0 0 0 3644 3821 3794 19100;19101;19102 19726;19727 19726 2 AVVAALMK GTGQTYCDLRSLNAKAVVAALMKA______ LRSLNAKAVVAALMKA______________ K A V M K A 3 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 8 0 801.47825 P08240 P08240 630 637 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.026977 41.502 By matching By MS/MS 1 1 1.4231 1.3015 2.0559 2 Median 1.3634 1.3206 NaN 1 0 Median 1.4855 1.2827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2620000 1046300 1573700 1177400 546670 630760 1442600 499600 942950 0 0 0 0 0 0 0 0 0 0 0 0 3645 1900 3795 19103;19104 19728 19728 1 AVVAQAVR VWLEAARLQPGDTAKAVVAQAVRHLPQSVR QPGDTAKAVVAQAVRHLPQSVRIYIRAAEL K A V V R H 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 812.48684 O94906 O94906 360 367 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0098457 77.748 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1265 0.98243 8.3918 4 Median NaN NaN NaN 0 0 Median 1.1081 0.94704 NaN 1 1 Median 0.92237 0.98847 NaN 1 0 Median 1.1452 0.97642 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3936 1.1434 NaN 1 0 Median 6395000 2907300 3487700 0 0 0 2912200 1238300 1673900 1613600 799970 813600 1143600 563690 579910 0 0 0 725610 305390 420220 3646 1735 3796 19105;19106;19107;19108 19729;19730;19731;19732 19730 4 AVVAQHVAPPPGIVEIDSEK QVQTQTHVASAPASRAVVAQHVAPPPGIVE HVAPPPGIVEIDSEKFACQWLNAHFEVNPD R A V E K F 3 0 0 1 0 1 2 1 1 2 0 1 0 0 3 1 0 0 0 4 0 0 20 0 2055.1001 Q68CP9;F8WCU9;F8W108 Q68CP9 503 522 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 3.2087E-19 112.56 By MS/MS By MS/MS 1 2 0.66506 0.58724 6.7915 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48187 0.53112 NaN 1 0 Median 0.67417 0.5958 2.0482 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18853000 12624000 6228600 0 0 0 0 0 0 16882000 11461000 5421700 1970600 1163700 806910 0 0 0 0 0 0 3647 3122 3797 19109;19110;19111 19733;19734;19735;19736 19733 4 AVVDAGITTK FIAAPELETLRAMHKAVVDAGITTKLLTDS RAMHKAVVDAGITTKLLTDSDLKKTVDESA K A V T K L 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 2 0 0 2 0 0 10 0 973.54441 Q9NZW5;B8ZZG1 Q9NZW5 470 479 MPP6 MAGUK p55 subfamily member 6 yes no 2 0.0079033 47.198 By MS/MS By MS/MS 1 2 1.1645 1.0062 25.233 3 Median 1.0507 1.0062 NaN 1 0 Median 1.4478 1.2405 31.323 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11185000 5330900 5854300 4902400 2593600 2308700 6282900 2737300 3545600 0 0 0 0 0 0 0 0 0 0 0 0 3648 647 3798 19112;19113;19114 19737;19738;19739;19740;19741 19740 5 AVVDLNGR VRIFLEFERVESAIKAVVDLNGRYFGGRVV RVESAIKAVVDLNGRYFGGRVVKACFYNLD K A V G R Y 1 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 842.46102 Q96I25 Q96I25 368 375 RBM17 Splicing factor 45 yes yes 2 0.028842 40.103 By MS/MS 1 0.81976 0.80731 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81976 0.80731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 957080 468600 488480 0 0 0 0 0 0 957080 468600 488480 0 0 0 0 0 0 0 0 0 3649 3674 3799 19115 19742 19742 1 AVVEVNIPVESEVNLK EKLISQIQPEVDRERAVVEVNIPVESEVNL VVEVNIPVESEVNLKLQNIMMLLRKCCNHP R A V L K L 1 0 2 0 0 0 3 0 0 1 1 1 0 0 1 1 0 0 0 5 0 0 16 0 1737.9513 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 420 435 HELLS Lymphoid-specific helicase yes no 2 0.039841 23.376 By matching By MS/MS By matching 2 1 1 0.68307 0.67153 63.126 4 Median NaN NaN NaN 0 0 Median 1.0034 0.93095 103.91 2 0 Median 0.6506 0.71799 NaN 1 0 Median 0.71716 0.62806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7127100 3690300 3436800 0 0 0 1720700 715940 1004800 4965700 2757300 2208400 440660 217010 223650 0 0 0 0 0 0 3650 211 3800 19116;19117;19118;19119 19743 19743 1 AVVGVVAGGGR KLPSGSKKVISSANRAVVGVVAGGGRIDKP SANRAVVGVVAGGGRIDKPILKAGRAYHKY R A V G R I 2 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 940.54541 P62917;E9PKU4;E9PKZ0;E9PP36 P62917 164 174 RPL8 60S ribosomal protein L8 yes no 2 0.00011213 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 3 5 7 1.2043 1.0842 11.213 27 Median 1.0732 1.0335 11.594 4 0 Median 1.1759 0.98647 14.783 6 0 Median 1.1277 1.0893 3.5513 2 0 Median 1.3345 1.0842 6.9439 3 0 Median 1.2043 1.2234 5.7927 5 0 Median 1.4219 1.1136 6.2444 7 1 Median 749340000 337300000 412040000 234810000 111770000 123050000 227920000 100780000 127150000 57975000 26851000 31124000 35445000 15006000 20439000 96797000 43188000 53610000 96388000 39710000 56678000 3651 2610 3801 19120;19121;19122;19123;19124;19125;19126;19127;19128;19129;19130;19131;19132;19133;19134;19135;19136;19137;19138;19139;19140;19141;19142;19143;19144;19145;19146 19744;19745;19746;19747;19748;19749;19750;19751;19752;19753;19754;19755;19756;19757;19758;19759;19760;19761;19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784;19785;19786 19751 41 AVVGYEDGTIR NCPATCGRVLPDGKRAVVGYEDGTIRIWDL DGKRAVVGYEDGTIRIWDLKQGSPIHVLKG R A V I R I 1 1 0 1 0 0 1 2 0 1 0 0 0 0 0 0 1 0 1 2 0 0 11 0 1178.5932 C9JG97;C9JEH3;Q13685;C9JTS3 C9JG97 211 221 AAMP Angio-associated migratory cell protein yes no 2 0.00016956 112.84 By MS/MS By MS/MS 1 1 1.3201 1.1796 6.7145 2 Median 1.3031 1.237 NaN 1 0 Median 1.3373 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28607000 11518000 17089000 16536000 6292000 10244000 12071000 5225800 6845100 0 0 0 0 0 0 0 0 0 0 0 0 3652 692 3802 19147;19148 19787;19788 19787 2 AVVISGAGK MVECFNKISRDADCRAVVISGAGKMFTAGI RDADCRAVVISGAGKMFTAGIDLMDMASDI R A V G K M 2 0 0 0 0 0 0 2 0 1 0 1 0 0 0 1 0 0 0 2 0 0 9 0 800.4756 M0QYT0;M0QXS7;M0R1A2;Q13011;M0R248;M0QZW4 M0QYT0 274 282 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial no no 2 0.0036618 63.565 By MS/MS By matching 1 1 1.2011 1.1856 2.6064 2 Median 1.2295 1.2076 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1735 1.1639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1407500 648320 759210 1324200 604700 719510 0 0 0 83318 43618 39700 0 0 0 0 0 0 0 0 0 3653 1419;2778 3803 19149;19150 19789;19790 19790 2 AVVIVDDR ELLEEAFSQFGPIERAVVIVDDRGRSTGKG QFGPIERAVVIVDDRGRSTGKGIVEFASKP R A V D R G 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 885.49198 P23246;Q15233;H7C367;C9IZL7 P23246 400 407 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 0.00043992 146.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 9 5 8 1.2991 1.1239 13.319 27 Median 1.5865 1.5598 7.6896 2 0 Median 1.3082 1.1147 1.1601 2 0 Median 1.0986 1.1096 10.432 5 0 Median 1.4181 1.234 12.969 6 2 Median 1.095 1.0825 6.3284 5 0 Median 1.3724 1.1011 4.8216 7 1 Median 1293800000 582530000 711240000 6602400 2305300 4297100 60142000 25782000 34360000 438490000 208550000 229930000 323390000 133270000 190120000 306700000 146620000 160080000 158460000 66002000 92453000 3654 2107;2935 3804 19151;19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181;19182 19791;19792;19793;19794;19795;19796;19797;19798;19799;19800;19801;19802;19803;19804;19805;19806;19807;19808;19809;19810;19811;19812;19813;19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827;19828;19829;19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846;19847;19848;19849;19850;19851 19839 61 AVVIVDDRGR ELLEEAFSQFGPIERAVVIVDDRGRSTGKG GPIERAVVIVDDRGRSTGKGIVEFASKPAA R A V G R S 1 2 0 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 10 1 1098.6146 P23246;Q15233;H7C367;C9IZL7 P23246 400 409 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 4.1013E-07 167.9 By matching By MS/MS By MS/MS 1 5 4 1.2537 1.2526 15.742 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1567 1.3366 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1312 1.2291 15.312 5 1 Median 1.4321 1.2803 18.853 4 0 Median 46741000 21786000 24956000 0 0 0 0 0 0 1910500 890690 1019800 0 0 0 34452000 16666000 17786000 10379000 4229200 6149700 3655 2107;2935 3805 19183;19184;19185;19186;19187;19188;19189;19190;19191;19192 19852;19853;19854;19855;19856;19857;19858;19859;19860;19861;19862 19854 11 AVVIVDDRGRPSGK ELLEEAFSVFGQVERAVVIVDDRGRPSGKG RAVVIVDDRGRPSGKGIVEFSGKPAARKAL R A V G K G 1 2 0 2 0 0 0 2 0 1 0 1 0 0 1 1 0 0 0 3 0 0 14 2 1467.8158 Q15233;H7C367;C9IZL7 Q15233 177 190 NONO Non-POU domain-containing octamer-binding protein yes no 3 0.00024461 62.042 By MS/MS By MS/MS 2 2 0.92559 1.104 11.789 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87023 0.99573 9.4248 2 0 Median 1.0043 0.87127 12.24 2 0 Median 21061000 10684000 10377000 0 0 0 0 0 0 0 0 0 0 0 0 13490000 7147200 6342600 7571100 3536800 4034400 3656 2935 3806 19193;19194;19195;19196 19863;19864;19865;19866;19867;19868 19865 6 AVVLEYFTR PRMSPQAREDQLQRKAVVLEYFTRHKRKEK DQLQRKAVVLEYFTRHKRKEKKKKAKGLSA K A V T R H 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 9 0 1096.5917 K7ERD7;O95707;K7EQV2 K7ERD7 55 63 POP4 Ribonuclease P protein subunit p29 yes no 2 0.0073226 51.854 By matching By MS/MS 1 1 1.381 1.2366 37.432 2 Median NaN NaN NaN 0 0 Median 1.8956 1.6114 NaN 1 0 Median 1.0061 0.94905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2293700 1228500 1065200 0 0 0 151270 50575 100690 2142400 1177900 964460 0 0 0 0 0 0 0 0 0 3657 1398 3807 19197;19198 19869 19869 1 AVVLQAQNQMSEAHK TGITALNSIEGVYRKAVVLQAQNQMSEAHK AVVLQAQNQMSEAHKLLQKLLVHCQKLKNT K A V H K L 3 0 1 0 0 3 1 0 1 0 1 1 1 0 0 1 0 0 0 2 0 0 15 0 1652.8304 F5H0F9;Q9UJX4;H0YFB5;F5H0N1 F5H0F9 535 549 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 4.739E-05 76.01 By MS/MS By MS/MS 1 1 1.0673 1.006 14.136 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88765 0.91031 NaN 1 0 Median 1.2832 1.1118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13393000 6945600 6447700 0 0 0 0 0 0 8587200 4694800 3892400 4806100 2250700 2555300 0 0 0 0 0 0 3658 1019 3808 19199;19200 19870;19871 19871 2 AVVLWDVASGQVVR GSFDNSSLCSGGGDKAVVLWDVASGQVVRK KAVVLWDVASGQVVRKFRGHAGKVNTVQFN K A V V R K 2 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 1 0 5 0 0 14 0 1497.8304 Q9BRX9;H7C0S9;F8VSE4 Q9BRX9 90 103 WDR83 WD repeat domain-containing protein 83 yes no 2 0.0010403 51.092 By MS/MS By matching 1 1 1.1876 1.0665 22.229 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9509 0.91133 NaN 1 0 Median 1.4833 1.248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1013000 498720 514270 0 0 0 0 0 0 918550 456030 462520 94439 42690 51749 0 0 0 0 0 0 3659 3808 3809 19201;19202 19872 19872 1 AVVMDLLR QLVQRYRSGIRGHMKAVVMDLLRQYLRVET GIRGHMKAVVMDLLRQYLRVETQFQNGHYD K A V L R Q 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 8 0 915.52117 Q13085 Q13085 985 992 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.0062263 72.138 By MS/MS By matching By matching 2 1 1 1.1708 1.0743 21.209 4 Median 0.96467 0.96559 22.991 2 0 Median 1.2036 1.016 NaN 1 0 Median 1.2207 1.3624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9599100 5156300 4442900 7561500 4223600 3337800 1544100 698280 845780 493590 234350 259240 0 0 0 0 0 0 0 0 0 3660 2784 3810 19203;19204;19205;19206 19873;19874 19874 2 AVVMISCNR GGDEYDNHCGKEQRRAVVMISCNRHTLADN GKEQRRAVVMISCNRHTLADNFNPVSEERG R A V N R H 1 1 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 2 0 0 9 0 1048.5158 P20645;F5GX30;H0YGE9;H0YGT2 P20645 139 147 M6PR Cation-dependent mannose-6-phosphate receptor yes no 2 0.0056277 57.047 By MS/MS 1 1.2354 1.0623 NaN 1 Median NaN NaN NaN 0 0 Median 1.2354 1.0623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2382100 1255400 1126700 0 0 0 2382100 1255400 1126700 0 0 0 0 0 0 0 0 0 0 0 0 3661 2082 3811 19207 19875 19875 1 AVVMLEYVER VDFDETWNKLLTTIKAVVMLEYVERATWND LTTIKAVVMLEYVERATWNDRFSDIYALCV K A V E R A 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 1 3 0 0 10 0 1207.6271 A0A0A0MTN0;Q13617;Q5T2B5;Q5T2B7 A0A0A0MTN0 36 45 CUL2 Cullin-2 yes no 2 0.005882 49.813 By MS/MS By matching 1 1 1.1894 1.0169 17.596 2 Median NaN NaN NaN 0 0 Median 1.3322 1.1516 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.062 0.89794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13747000 5972700 7774000 0 0 0 13377000 5789000 7587800 0 0 0 369900 183690 186210 0 0 0 0 0 0 3662 196 3812 19208;19209 19876 19876 1 AVVPGVKPQDWISAAR GSGVGIGDRFKIEGRAVVPGVKPQDWISAA VVPGVKPQDWISAARVLVDGEEHVGFLKTD R A V A R V 3 1 0 1 0 1 0 1 0 1 0 1 0 0 2 1 0 1 0 3 0 0 16 1 1692.9311 Q9NPA0;H0YDT8 Q9NPA0 51 66 EMC7 ER membrane protein complex subunit 7 yes no 3 4.2427E-05 53.168 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.93174 0.95981 12.612 6 Median 0.9628 1.0044 NaN 1 0 Median 1.0238 0.95675 NaN 1 0 Median 0.94933 0.98274 NaN 1 0 Median 0.89674 0.7938 NaN 1 0 Median 0.91448 0.96287 NaN 1 0 Median 0.82743 0.74504 NaN 1 0 Median 26259000 13957000 12302000 17920000 9542400 8377800 1883000 965720 917230 4396000 2434500 1961500 325550 180660 144890 1241600 528460 713150 492340 305120 187220 3663 4044 3813 19210;19211;19212;19213;19214;19215 19877;19878;19879;19880 19878 4 AVVPPISLSTTFK QAIHVGQDPEQWTSRAVVPPISLSTTFKQG SRAVVPPISLSTTFKQGAPGQHSGFEYSRS R A V F K Q 1 0 0 0 0 0 0 0 0 1 1 1 0 1 2 2 2 0 0 2 0 0 13 0 1358.781 P32929 P32929 36 48 CTH Cystathionine gamma-lyase yes yes 2 0.00054372 70.977 By MS/MS By MS/MS 1 1 1.0131 0.91031 14.895 2 Median 1.0799 1.0114 NaN 1 0 Median 0.95047 0.8193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5246200 2588700 2657500 3397300 1597800 1799600 1848900 990930 857930 0 0 0 0 0 0 0 0 0 0 0 0 3664 2220 3814 19216;19217 19881;19882;19883 19882 3 AVVPSYIPLVK PSKEEVFRFVQSCARAVVPSYIPLVKKHCD SCARAVVPSYIPLVKKHCDDSFTPQEKLWQ R A V V K K 1 0 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 1 3 0 0 11 0 1184.7169 P36551 P36551 360 370 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 2 0.00096117 61.679 By MS/MS By matching By matching By matching 2 1 1 1 0.83623 0.77246 20.436 5 Median 0.86334 0.81116 6.9151 2 0 Median 1.0271 0.88473 NaN 1 0 Median 0.58689 0.65346 NaN 1 0 Median 0.64148 0.54005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23507000 12784000 10723000 18087000 9879900 8206600 2970300 1434000 1536300 2073800 1244600 829170 375990 224960 151030 0 0 0 0 0 0 3665 2259 3815 19218;19219;19220;19221;19222 19884;19885 19885 2 AVVQLKPR NEYKGHLSGLAKRAKAVVQLKPRHPAHPMR GLAKRAKAVVQLKPRHPAHPMRGRLPLLAV K A V P R H 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 1 909.57599 Q15149;H0YDN1 Q15149 927 934 PLEC Plectin yes no 2 0.016541 92.692 By MS/MS By MS/MS By MS/MS 1 1 1 1.1845 1.0836 2.8244 3 Plateau 1.0729 1.0836 NaN 1 0 Median 1.1789 1.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1845 1.0522 NaN 1 0 Median 8041000 3639600 4401400 764670 328050 436630 3182400 1377600 1804800 0 0 0 0 0 0 0 0 0 4093900 1934000 2160000 3666 2933 3816 19223;19224;19225 19886;19887;19888;19889 19889 4 AVVQVFEGTSGIDAK GTKRSGQVLEVSGSKAVVQVFEGTSGIDAK AVVQVFEGTSGIDAKKTSCEFTGDILRTPV K A V A K K 2 0 0 1 0 1 1 2 0 1 0 1 0 1 0 1 1 0 0 3 0 0 15 0 1519.7882 P21281;H0YC04 P21281 94 108 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 2 4.6482E-09 135.99 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.319 1.1992 17.124 4 Median 1.0625 0.98113 NaN 1 1 Median 1.2609 1.0736 NaN 1 0 Median 1.3798 1.3394 NaN 1 0 Median 1.6261 1.3991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41080000 17447000 23633000 20745000 9439300 11305000 4707200 2032900 2674300 14061000 5376000 8684600 1567900 599070 968830 0 0 0 0 0 0 3667 2086 3817 19226;19227;19228;19229 19890;19891;19892 19891 3 AVVTEPAKGEEAFQMSEVDEESGLKDSEPER PTKRVRIGKTLPSEKAVVTEPAKGEEAFQM EVDEESGLKDSEPERKRKKTEDSSSGKSVA K A V E R K 3 1 0 2 0 1 8 2 0 0 1 2 1 1 2 3 1 0 0 3 0 0 31 2 3392.5566 Q14966;A0A096LNS4 Q14966 1867 1897 ZNF638 Zinc finger protein 638 yes no 4 3.3159E-22 73.616 By MS/MS 1 0.52962 0.69972 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52962 0.69972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12115000 7296400 4818300 0 0 0 0 0 0 12115000 7296400 4818300 0 0 0 0 0 0 0 0 0 3668 2903 3818 19230 19893 19893 1 AVVTGLVHK TGRPKGVLSTHQNIRAVVTGLVHKWAWTKD THQNIRAVVTGLVHKWAWTKDDVILHVLPL R A V H K W 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 3 0 0 9 0 922.56 A0A3B3ISK9;Q4G176;F5GX20;F5H2G6 A0A3B3ISK9 221 229 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial yes no 2 0.056984 29.149 By MS/MS 1 1.9225 1.7043 NaN 1 Median NaN NaN NaN 0 0 Median 1.9225 1.7043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 593350 190410 402940 0 0 0 593350 190410 402940 0 0 0 0 0 0 0 0 0 0 0 0 3669 425 3819 19231 19894 19894 1 AVVVCPKDEDYK AQRRKMCLFAGFQRKAVVVCPKDEDYKQRT QRKAVVVCPKDEDYKQRTQKKAEVEGKDLP K A V Y K Q 1 0 0 2 1 0 1 0 0 0 0 2 0 0 1 0 0 0 1 3 0 0 12 1 1421.6861 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 603 614 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.026638 34.96 By MS/MS By matching 3 1 0.99906 1.0925 23.119 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1102 1.1846 9.3461 3 1 Median 0.81394 0.72543 NaN 1 0 Median 7739000 3464000 4275000 0 0 0 0 0 0 0 0 0 0 0 0 7254900 3261900 3993100 484070 202110 281960 3670 2680 3820 19232;19233;19234;19235 19895;19896 19895 2 AVVVGFDPHFSYMK GPGDWLHAPLEPDVRAVVVGFDPHFSYMKL RAVVVGFDPHFSYMKLTKALRYLQQPGCLL R A V M K L 1 0 0 1 0 0 0 1 1 0 0 1 1 2 1 1 0 0 1 3 0 0 14 0 1595.7806 A6NDG6 A6NDG6 167 180 PGP Phosphoglycolate phosphatase yes yes 2;3 0.00021536 77.379 By MS/MS By matching By matching 3 1 1 1.0096 0.91182 42.168 5 Median 1.0096 0.91804 23.22 3 0 Median 1.0402 0.88107 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44264 0.42732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39587000 19500000 20087000 38165000 18780000 19385000 1309000 647120 661890 0 0 0 112540 72947 39591 0 0 0 0 0 0 3671 506 3821 19236;19237;19238;19239;19240 19897;19898;19899;19900 19899 4 AVVVNAAQLASYSQSK GVLTLWRGCIPTMARAVVVNAAQLASYSQS VVVNAAQLASYSQSKQFLLDSGYFSDNILC R A V S K Q 4 0 1 0 0 2 0 0 0 0 1 1 0 0 0 3 0 0 1 3 0 0 16 0 1634.8628 I3L1P8;Q02978 I3L1P8 180 195 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2;3 2.0528E-10 160.52 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 2 1 1.2174 1.0996 36.14 9 Median 1.0426 0.94323 0.42975 2 0 Median 1.6705 1.4013 4.3222 3 0 Plateau 1.1385 1.0996 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9325 0.95066 90.506 2 1 Median 1.2174 0.99741 NaN 1 0 Median 216370000 104560000 111810000 186910000 90441000 96465000 12553000 4286100 8267100 1670400 730780 939630 0 0 0 15033000 9009100 6023500 208440 94950 113490 3672 1277 3822 19241;19242;19243;19244;19245;19246;19247;19248;19249 19901;19902;19903;19904;19905;19906;19907;19908 19902 8 AVVVTDGER HVRSIVDNWPENHVKAVVVTDGERILGLGD PENHVKAVVVTDGERILGLGDLGVYGMGIP K A V E R I 1 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 3 0 0 9 0 944.49271 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PQF8;A0A1W2PQ37;Q6TCH8;E9PMB9;Q16798 A0A1W2PPH1 157 165 ME2;ME3 NAD-dependent malic enzyme, mitochondrial;Malic enzyme;NADP-dependent malic enzyme, mitochondrial yes no 2 0.0022552 73.26 By MS/MS By MS/MS 1 1 1.3926 1.3057 36.636 2 Median 0.99416 1.0077 NaN 1 0 Median 1.9507 1.6918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510000 2092000 3417900 1595900 702420 893480 3914100 1389600 2524500 0 0 0 0 0 0 0 0 0 0 0 0 3673 337 3823 19250;19251 19909;19910;19911 19911 3 AVVVVDDR ELLEQAFSQFGPVEKAVVVVDDRGRATGKG QFGPVEKAVVVVDDRGRATGKGFVEFAAKP K A V D R G 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 8 0 871.47633 Q8WXF1;X6RDA4 Q8WXF1 185 192 PSPC1 Paraspeckle component 1 yes no 2 0.0028236 104.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 1.0903 0.94673 17.979 7 Median 0.70698 0.68943 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.83815 0.83795 1.7902 2 0 Median 1.2164 1.0592 9.016 3 0 Median 1.0903 1.0947 NaN 1 1 Median NaN NaN NaN 0 0 Median 76865000 40113000 36752000 4628800 2817100 1811800 0 0 0 57635000 30869000 26765000 7315800 3213900 4101900 7285700 3213200 4072500 0 0 0 3674 3520 3824 19252;19253;19254;19255;19256;19257;19258;19259 19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923 19914 12 AVYDEQGTVDEDSPVLTQDR ILGKVYSVLSDREQRAVYDEQGTVDEDSPV QGTVDEDSPVLTQDRDWEAYWRLLFKKISL R A V D R D 1 1 0 4 0 2 2 1 0 0 1 0 0 0 1 1 2 0 1 3 0 0 20 0 2236.0132 Q8WXX5 Q8WXX5 76 95 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 5.023E-39 202.13 By MS/MS By MS/MS 2 2 0.8396 0.7571 9.7323 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74224 0.72213 12.919 2 0 Median 0.9194 0.77036 8.6874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39054000 21615000 17439000 0 0 0 0 0 0 37188000 20742000 16446000 1865700 872910 992740 0 0 0 0 0 0 3675 3522 3825 19260;19261;19262;19263 19924;19925;19926;19927;19928;19929 19924 6 AVYEDRPPGSVVPTSAAEASR SVSRGSYQLQAQMNRAVYEDRPPGSVVPTS PPGSVVPTSAAEASRAMAGDTSLSENYAFA R A V S R A 4 2 0 1 0 0 2 1 0 0 0 0 0 0 3 3 1 0 1 3 0 0 21 1 2158.0655 Q9H1Z4 Q9H1Z4 126 146 WDR13 WD repeat-containing protein 13 yes yes 3 2.502E-12 78.708 By MS/MS By MS/MS 1 1 0.8524 0.80966 27.525 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65025 0.66646 NaN 1 0 Median 1.1174 0.98363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20104000 11618000 8486200 0 0 0 0 0 0 16608000 10128000 6479900 3496300 1490000 2006300 0 0 0 0 0 0 3676 3937 3826 19264;19265 19930;19931;19932 19930 3 AVYHNMPLIWKPGYLDR GYALLGKVELQQGLRAVYHNMPLIWKPGYL YHNMPLIWKPGYLDRALQVMEKVAASPEDI R A V D R A 1 1 1 1 0 0 0 1 1 1 2 1 1 0 2 0 0 1 2 1 0 0 17 1 2072.0666 G5EA06;Q92552;D6RH20 G5EA06 186 202 MRPS27 28S ribosomal protein S27, mitochondrial yes no 3 7.1678E-06 68.944 By MS/MS By matching By matching 1 1 1 0.7741 0.83444 19.216 3 Plateau 0.77879 0.83444 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68998 0.78388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65742 0.58237 NaN 1 0 Median 10256000 5513400 4742800 9033200 4801400 4231900 0 0 0 1007700 572520 435160 0 0 0 0 0 0 215390 139560 75832 3677 1131 3827 19266;19267;19268 19933 19933 1 AVYIAPLK ELAIFRVFNKYPTSKAVYIAPLKALVRERM NKYPTSKAVYIAPLKALVRERMDDWKVRIE K A V L K A 2 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 8 0 873.53239 Q8N3C0 Q8N3C0 1375 1382 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.012537 54.787 By MS/MS 1 1.4681 1.2796 NaN 1 Median NaN NaN NaN 0 0 Median 1.4681 1.2796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3576100 1527600 2048500 0 0 0 3576100 1527600 2048500 0 0 0 0 0 0 0 0 0 0 0 0 3678 3366 3828 19269 19934 19934 1 AVYISVQDK FFAIEIARNREGYNKAVYISVQDKEGEKGV REGYNKAVYISVQDKEGEKGVNNGGEKRAD K A V D K E 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 2 0 0 9 0 1021.5444 Q9BVG4 Q9BVG4 157 165 PBDC1 Protein PBDC1 yes yes 2 0.0014358 81.548 By MS/MS 1 1.2899 1.0846 NaN 1 Median NaN NaN NaN 0 0 Median 1.2899 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9447200 3672300 5774900 0 0 0 9447200 3672300 5774900 0 0 0 0 0 0 0 0 0 0 0 0 3679 3852 3829 19270 19935;19936 19935 2 AVYISVQDKEGEK FFAIEIARNREGYNKAVYISVQDKEGEKGV NKAVYISVQDKEGEKGVNNGGEKRADSGEE K A V E K G 1 0 0 1 0 1 2 1 0 1 0 2 0 0 0 1 0 0 1 2 0 0 13 1 1464.746 Q9BVG4 Q9BVG4 157 169 PBDC1 Protein PBDC1 yes yes 2;3 1.415E-05 91.855 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.98397 0.96035 9.5631 5 Median 0.98397 0.96035 NaN 1 0 Median 1.073 0.96655 4.8529 2 1 Median 0.93616 0.98008 NaN 1 1 Median 0.89736 0.78795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22847000 10370000 12477000 3853600 2045000 1808600 10370000 4521000 5849100 5033400 2063900 2969400 3589800 1740000 1849800 0 0 0 0 0 0 3680 3852 3830 19271;19272;19273;19274;19275 19937;19938;19939;19940;19941;19942;19943;19944 19941 8 AVYMMPTEGDDSSK NSLLQTLFFTNQLRKAVYMMPTEGDDSSKS KAVYMMPTEGDDSSKSVPLALQRVFYELQH K A V S K S 1 0 0 2 0 0 1 1 0 0 0 1 2 0 1 2 1 0 1 1 0 0 14 0 1529.6378 Q93009;H3BND8;F5H2X1 Q93009 241 254 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 6.5451E-08 101.93 By MS/MS By MS/MS By MS/MS 1 1 1 0.99357 0.83735 18.509 3 Median 1.1777 1.1449 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.77008 0.82491 NaN 1 0 Median 0.99357 0.83735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16336000 8694300 7641200 6717300 3184500 3532800 0 0 0 8029400 4710700 3318800 1588800 799190 789610 0 0 0 0 0 0 3681 3574 3831 19276;19277;19278 19945;19946;19947;19948;19949 19947 5 AVYTLTSLYR QTTYALIEAITEYTKAVYTLTSLYRQYTSL TEYTKAVYTLTSLYRQYTSLLGKMNSEEED K A V Y R Q 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 2 0 2 1 0 0 10 0 1185.6394 Q9NR28;H7BZK7;A0A2U3TZH2;H7BZQ7 Q9NR28 106 115 DIABLO Diablo homolog, mitochondrial yes no 2 0.00098051 69.598 By MS/MS By MS/MS By MS/MS 2 1 1 1.1733 1.1287 12.93 4 Median 1.0925 1.0465 1.2481 2 0 Median 1.6473 1.3682 NaN 1 0 Median 1.2596 1.2066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43065000 19575000 23490000 36558000 16897000 19661000 1775900 668480 1107400 4730800 2009200 2721600 0 0 0 0 0 0 0 0 0 3682 4075 3832 19279;19280;19281;19282 19950;19951;19952;19953;19954;19955 19950 6 AVYTLYQQR MQIQPNREDTETLIKAVYTLYQQRGLILPV TETLIKAVYTLYQQRGLILPVRTLLLKFFS K A V Q R G 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 9 0 1140.5928 Q9NXF1;A0A0A0MSR3 Q9NXF1 505 513 TEX10 Testis-expressed sequence 10 protein yes no 2 0.00084619 94.662 By MS/MS 2 0.88705 0.93438 11.054 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88705 0.93438 11.054 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20541000 9962300 10579000 0 0 0 0 0 0 20541000 9962300 10579000 0 0 0 0 0 0 0 0 0 3683 4163 3833 19283;19284 19956;19957 19957 2 AVYTQDCPLAAAK KKAEEIANEMIEAAKAVYTQDCPLAAAKAI AKAVYTQDCPLAAAKAIQGLRAVFDETYPD K A V A K A 4 0 0 1 1 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 13 0 1406.6864 P49588;H3BPK7 P49588 665 677 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.00024031 79.974 By MS/MS 2 1.0442 0.91231 1.1999 2 Median NaN NaN NaN 0 0 Median 1.0442 0.91231 1.1999 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11655000 5482600 6172600 0 0 0 11655000 5482600 6172600 0 0 0 0 0 0 0 0 0 0 0 0 3684 2385 3834 19285;19286 19958;19959 19958 2 AWDDFFPGSDR ______________________________ APLRAWDDFFPGSDRFARPDFRDISKWNNR R A W D R F 1 1 0 3 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 0 0 0 11 0 1311.552 O75915;F8WF90;C9JQU6;F8WF33 O75915 10 20 ARL6IP5 PRA1 family protein 3 yes no 2 0.00019136 95.099 By MS/MS By MS/MS By MS/MS 2 3 1 1.0316 1.0011 12.768 6 Median 0.84335 0.81584 6.5519 2 0 Median 1.1956 1.0042 3.519 3 0 Median 0.95166 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29802000 15314000 14489000 25129000 13192000 11936000 2853300 1199500 1653700 1820400 922040 898360 0 0 0 0 0 0 0 0 0 3685 1705 3835 19287;19288;19289;19290;19291;19292 19960;19961;19962;19963;19964;19965;19966 19961 7 AWDIAIATMK KDKFSFDLGKGEVIKAWDIAIATMKVGEVC GEVIKAWDIAIATMKVGEVCHITCKPEYAY K A W M K V 3 0 0 1 0 0 0 0 0 2 0 1 1 0 0 0 1 1 0 0 0 0 10 0 1118.5794 Q02790;F5H1U3 Q02790 89 98 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00033827 85.676 By MS/MS By MS/MS By matching By matching 2 1 2 1 1.2133 1.1541 25.244 6 Median 1.4811 1.4286 39.873 2 0 Median NaN NaN NaN 0 0 Median 1.2605 1.2361 NaN 1 0 Median 1.3302 1.1728 23.366 2 0 Median 0.92784 0.97116 NaN 1 0 Median NaN NaN NaN 0 0 Median 45273000 20829000 24444000 24685000 11011000 13674000 0 0 0 8861000 3925100 4935900 1710500 721240 989290 10017000 5172400 4844500 0 0 0 3686 2701 3836 19293;19294;19295;19296;19297;19298 19967;19968;19969;19970 19968 4 AWDIGVATMK NEPFVFSLGKGQVIKAWDIGVATMKKGEIC GQVIKAWDIGVATMKKGEICHLLCKPEYAY K A W M K K 2 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 1 0 1 0 0 10 0 1090.5481 Q13451 Q13451 89 98 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 2 0.002008 78.516 By MS/MS 1 1.0074 0.95625 NaN 1 Median 1.0074 0.95625 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4012000 1955600 2056400 4012000 1955600 2056400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3687 2819 3837 19299 19971 19971 1 AWDKESEPAEEVK PMEVEEVDLEPMAAKAWDKESEPAEEVKQE AKAWDKESEPAEEVKQEADSGKGTVSYLGS K A W V K Q 2 0 0 1 0 0 4 0 0 0 0 2 0 0 1 1 0 1 0 1 0 0 13 1 1516.7046 A0A087WU64;A6NMQ1;P09884 A0A087WU64 272 284 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.038386 19.211 By MS/MS 1 0.6685 0.68867 NaN 1 Median 0.6685 0.68867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1272400 533990 738460 1272400 533990 738460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3688 26 3838 19300 19972 19972 1 AWDQEAEGAGPELGLR AGNLKPVWASRGCPRAWDQEAEGAGPELGL WDQEAEGAGPELGLRVARTKALWLPMGD__ R A W L R V 3 1 0 1 0 1 3 3 0 0 2 0 0 0 1 0 0 1 0 0 0 0 16 0 1697.8009 Q8IZ83;F5H4B6 Q8IZ83 774 789 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 2 1.2001E-19 117.23 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3689 3348 3839 19301 19973 19973 1 AWEDWAIYPEPFLIK LQSENFKQRVMTCFRAWEDWAIYPEPFLIK AWEDWAIYPEPFLIKLQNIFLGLVNIIEEK R A W I K L 2 0 0 1 0 0 2 0 0 2 1 1 0 1 2 0 0 2 1 0 0 0 15 0 1876.94 O15042;E7ET15 O15042 656 670 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.034239 24.855 By MS/MS By matching By matching 1 1 1 0.75834 0.77317 4.326 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69615 0.74141 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75834 0.78418 NaN 1 0 Median 0.82291 0.72021 NaN 1 0 Median 4330700 2343200 1987500 0 0 0 0 0 0 1131800 585120 546690 0 0 0 3104200 1705800 1398400 94712 52280 42432 3690 1515 3840 19302;19303;19304 19974 19974 1 AWEEYYK EPPQPPPTGQSDYTKAWEEYYKKIGQQPQQ TGQSDYTKAWEEYYKKIGQQPQQPGAPPQQ K A W Y K K 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 7 0 987.4338 Q96AE4;E9PEB5;Q92945;A0A087WTP3;M0R3J3;M0R0C6;M0R251;M0QYG1;M0R263 Q92945 621 627 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 no no 2 0.012717 77.748 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 4 1 1 1.1374 1.0408 5.7939 11 Median 1.1118 1.0408 NaN 1 0 Median 1.1296 0.98821 4.2698 2 0 Median 0.97997 1.0106 5.0584 2 0 Median 1.2489 1.0732 4.4565 4 0 Median 1.072 1.1045 NaN 1 0 Median 1.1374 0.94388 NaN 1 0 Median 136580000 66664000 69912000 5404100 2564500 2839600 6835800 3203100 3632700 85170000 43155000 42014000 36102000 16384000 19718000 1964800 870530 1094300 1099900 486830 613080 3691 3568;3599 3841 19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315 19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985 19982 11 AWEEYYKK EPPQPPPTGQSDYTKAWEEYYKKIGQQPQQ GQSDYTKAWEEYYKKIGQQPQQPGAPPQQD K A W K K I 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 1 2 0 0 0 8 1 1115.5288 Q96AE4;E9PEB5;Q92945;A0A087WTP3;M0R3J3;M0R0C6;M0R251;M0QYG1;M0R263 Q92945 621 628 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 no no 2 0.0033234 113.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1097 1.1455 6.9438 6 Median 1.0313 1.0624 NaN 1 0 Median 1.3373 1.2939 NaN 1 0 Median 0.99037 1.1123 1.5891 2 0 Median 1.1941 1.1665 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3261 1.1926 NaN 1 0 Median 86893000 40090000 46803000 5997700 2847700 3150000 3266300 1465600 1800700 52866000 24792000 28074000 18956000 8616600 10340000 0 0 0 5807100 2368100 3439000 3692 3568;3599 3842 19316;19317;19318;19319;19320;19321 19986;19987;19988;19989;19990;19991;19992;19993;19994 19992 9 AWEGNYLASKPDTPQTSGTFVPVANELK VEMLKGQRADLGLQRAWEGNYLASKPDTPQ PQTSGTFVPVANELKRKDKYMNVLFSCHVR R A W L K R 3 0 2 1 0 1 2 2 0 0 2 2 0 1 3 2 3 1 1 2 0 0 28 1 3019.4927 K7EIG7;O94832;J3QRN6 K7EIG7 734 761 MYO1D Unconventional myosin-Id yes no 3 0.014366 16.977 By MS/MS By matching By MS/MS 1 1 1 0.50001 0.57112 16.618 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50001 0.57112 NaN 1 0 Median 0.78104 0.74399 NaN 1 0 Median 0.48879 0.54756 NaN 1 0 Median NaN NaN NaN 0 0 Median 11698000 7302400 4395100 0 0 0 0 0 0 7955800 4806700 3149000 448970 262670 186300 3292800 2233000 1059800 0 0 0 3693 1359 3843 19322;19323;19324 19995;19996;19997 19996 3 AWELTQK LMRIFVDIEKLPWSKAWELTQKTFAYTNHT IEKLPWSKAWELTQKTFAYTNHTVLPEALE K A W Q K T 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 7 0 874.45487 P06737;E9PK47 P06737 365 371 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.024489 55.441 By MS/MS By matching 1 1 1.5973 1.5358 30.313 2 Median NaN NaN NaN 0 0 Median 1.3992 1.2395 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8235 1.9029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2226600 860400 1366200 0 0 0 1864500 740550 1123900 0 0 0 362080 119850 242230 0 0 0 0 0 0 3694 1874 3844 19325;19326 19998;19999 19999 2 AWGAVVPLVGK REAIQHPADEKLQEKAWGAVVPLVGKLKKF LQEKAWGAVVPLVGKLKKFYEFSQRLEAAL K A W G K L 2 0 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 3 0 0 11 0 1095.6441 Q9NUQ9;E5RI16;E5RJL8;A0A1W2PRQ0;A0A087X178;E5RJE1;E5RIR8 Q9NUQ9 79 89 FAM49B Protein FAM49B yes no 2 0.0036624 49.418 By MS/MS By matching By matching By matching 1 1 1 1 1.0036 0.91117 13.313 4 Median 0.86411 0.78713 NaN 1 0 Median 1.1429 0.96854 NaN 1 0 Median 0.88123 0.85719 NaN 1 0 Median 1.2781 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20412000 10344000 10068000 17949000 9191900 8756700 1076400 471300 605140 1294800 638790 655960 92131 42221 49910 0 0 0 0 0 0 3695 4120 3845 19327;19328;19329;19330 20000;20001 20001 2 AWGILTFK RVRPDYTAQNLDHGKAWGILTFKDASFSSS QNLDHGKAWGILTFKDASFSSSGKTESEAR K A W F K D 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 1 1 0 0 0 0 8 0 934.52764 C9JJ19;P82930 C9JJ19 114 121 MRPS34 28S ribosomal protein S34, mitochondrial yes no 2 0.028842 40.103 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0788 1.0384 22.101 5 Median 1.0687 0.99327 NaN 1 0 Median 1.6913 1.4651 NaN 1 0 Median 1.0788 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77182 0.79274 NaN 1 0 Median 1.3242 1.1034 NaN 1 0 Median 9303300 4560900 4742400 6073000 3038300 3034700 173720 60261 113450 1680300 779940 900410 0 0 0 790650 478860 311790 585670 203560 382110 3696 702 3846 19331;19332;19333;19334;19335 20002;20003 20003 2 AWGPGLEGGVVGK FEVKVGTECGNQKVRAWGPGLEGGVVGKSA VRAWGPGLEGGVVGKSADFVVEAIGDDVGT R A W G K S 1 0 0 0 0 0 1 5 0 0 1 1 0 0 1 0 0 1 0 2 0 0 13 0 1225.6455 P21333;Q60FE5;A0A087WWY3 P21333 581 593 FLNA Filamin-A no no 2 1.081E-05 96.342 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 0.73702 0.81102 21.237 11 Plateau 0.91373 0.89691 23.967 3 1 Plateau 0.75082 0.67644 11.131 3 0 Plateau 0.74091 0.80727 29.266 3 1 Plateau 0.71042 0.66854 22.939 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 559630000 301920000 257710000 242070000 123380000 118690000 237930000 132920000 105010000 70754000 40543000 30211000 8875500 5074600 3800900 0 0 0 0 0 0 3697 2088;3120 3847 19336;19337;19338;19339;19340;19341;19342;19343;19344;19345;19346 20004;20005;20006;20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019 20013 16 AWGPGLETGQVGK FEVQVSPEAGVQKVRAWGPGLETGQVGKSA VRAWGPGLETGQVGKSADFVVEAIGTEVGT R A W G K S 1 0 0 0 0 1 1 4 0 0 1 1 0 0 1 0 1 1 0 1 0 0 13 0 1298.6619 Q14315 Q14315 576 588 FLNC Filamin-C yes yes 2 1.4639E-05 95.573 By MS/MS By MS/MS By matching 1 2 1 1.0323 0.90034 19.838 4 Median 1.2862 1.2909 NaN 1 1 Median 0.97042 0.86423 6.2093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0473 0.89768 NaN 1 0 Median 76106000 35938000 40168000 30486000 12796000 17690000 44500000 22552000 21948000 0 0 0 0 0 0 0 0 0 1119700 589830 529830 3698 2871 3848 19347;19348;19349;19350 20020;20021;20022 20021 3 AWGPGLHGGIVGR FEVQVGPEAGMQKVRAWGPGLHGGIVGRSA VRAWGPGLHGGIVGRSADFVVESIGSEVGS R A W G R S 1 1 0 0 0 0 0 5 1 1 1 0 0 0 1 0 0 1 0 1 0 0 13 0 1275.6836 O75369;E7EN95 O75369 554 566 FLNB Filamin-B yes no 2;3 1.5514E-06 116.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1.0273 0.9689 31.424 11 Median 1.0582 1.0083 12.687 4 0 Median 1.0443 0.83296 27.024 3 0 Median 0.74618 0.82271 23.131 2 0 Median 1.2769 1.1113 NaN 1 0 Median 0.4145 0.43967 NaN 1 0 Median NaN NaN NaN 0 0 Median 215830000 103240000 112590000 93698000 43814000 49884000 105420000 50822000 54595000 13080000 6805100 6274800 1294700 550530 744170 2342200 1253200 1089000 0 0 0 3699 1664 3849 19351;19352;19353;19354;19355;19356;19357;19358;19359;19360;19361 20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036;20037;20038 20034 16 AWHAFFTAAER RGTVEKGPQYGTLEKAWHAFFTAAERLSAL TLEKAWHAFFTAAERLSALHLEVREKLQGQ K A W E R L 4 1 0 0 0 0 1 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 11 0 1305.6255 A0A0C4DGG1;Q9UKS6;E9PIY1;E9PJ75;E9PNM9 A0A0C4DGG1 80 90 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 3 0.0012628 47.559 By matching By MS/MS By matching By matching 1 1 1 1 0.95017 0.9482 25.228 4 Median 1.0272 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87894 0.8822 NaN 1 0 Median 0.76479 0.66832 NaN 1 0 Median 1.2057 1.2134 NaN 1 0 Median NaN NaN NaN 0 0 Median 7657700 3811000 3846700 1455900 781160 674740 0 0 0 3971600 1978300 1993300 514670 249920 264750 1715500 801550 913910 0 0 0 3700 244 3850 19362;19363;19364;19365 20039;20040 20039 2 AWIHTEDNKR FAKAAQIFITELTLRAWIHTEDNKRRTLQR ELTLRAWIHTEDNKRRTLQRNDIAMAITKF R A W K R R 1 1 1 1 0 0 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 0 10 1 1268.6262 Q5T6K5;Q5T6K7;E9PI99;Q13952;A0A0A0MT00;E9PL11 Q5T6K5 84 93 NFYC Nuclear transcription factor Y subunit gamma yes no 3 0.042956 16.632 By MS/MS By matching 1 1 0.98008 1.0155 3.2133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91318 1.0388 NaN 1 0 Median 1.0519 0.99266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 606750 277700 329040 0 0 0 0 0 0 474680 239020 235660 132060 38686 93378 0 0 0 0 0 0 3701 3091 3851 19366;19367 20041 20041 1 AWMAFMSEAER RQLVEKGPQYGTVEKAWMAFMSEAERVSEL TVEKAWMAFMSEAERVSELHLEVKASLMND K A W E R V 3 1 0 0 0 0 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 11 0 1327.5689 A0A0U1RR22;Q9UNF0;B0QYG7;B0QYG8 A0A0U1RR22 82 92 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.0018837 56.563 By MS/MS By MS/MS 1 1 0.89575 0.92138 4.4723 2 Median 0.89029 0.89269 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90125 0.95098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885100 2027500 1857600 2473200 1315300 1157900 0 0 0 1411900 712210 699710 0 0 0 0 0 0 0 0 0 3702 307 3852 19368;19369 20042;20043 20042 2 AWNAYPYCR VRMIAPEGSLVFHEKAWNAYPYCRTIVTNE LVFHEKAWNAYPYCRTIVTNEYMKDDFFIK K A W C R T 2 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 2 0 0 0 9 0 1199.5182 F5GWE5;Q00169;I3L4H1;I3L471;I3L4U7;I3L4C0;I3L459;I3L3W1;I3L2X8;P48739;A0A0A0MSW4;B3KYB6;B3KYB7 P48739 87 95 PITPNA;PITPNB Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform no no 2 0.0054606 57.559 By matching By MS/MS 1 1 0.79207 0.71051 14.867 2 Median 0.66314 0.63961 NaN 1 0 Median 0.94606 0.78927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6932400 3507200 3425200 2474000 1278300 1195700 4458400 2229000 2229400 0 0 0 0 0 0 0 0 0 0 0 0 3703 2368;997 3853 19370;19371 20044;20045 20045 2 AWQGAMDAGAASR DWGEHNQRLEEHQARAWQGAMDAGAASREH ARAWQGAMDAGAASREHARWQGGERGLSGP R A W S R E 5 1 0 1 0 1 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 0 13 0 1290.5775 Q14151 Q14151 861 873 SAFB2 Scaffold attachment factor B2 yes yes 2 4.3111E-07 124.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 0.9701 0.86028 16.028 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.037 1.1406 6.7616 2 2 Median 1.003 0.85352 NaN 1 0 Median 0.85836 0.87914 3.067 2 0 Median 0.94659 0.78959 0.45208 2 0 Median 35690000 18281000 17409000 0 0 0 0 0 0 8001900 4113700 3888200 2626700 1231400 1395300 20518000 10325000 10193000 4544000 2611100 1932900 3704 2859 3854 19372;19373;19374;19375;19376;19377;19378 20046;20047;20048;20049;20050;20051;20052 20048 7 AWRDPDEPVLLEEPVVLALAEK GLEVTAYSPLGSSDRAWRDPDEPVLLEEPV PVLLEEPVVLALAEKYGRSPAQILLRWQVQ R A W E K Y 3 1 0 2 0 0 4 0 0 0 4 1 0 0 3 0 0 1 0 3 0 0 22 1 2488.3213 P14550 P14550 219 240 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 3 8.8575E-07 40.756 By matching By MS/MS 1 2 0.99629 0.89922 31.931 3 Plateau 0.44656 0.47629 NaN 1 0 Median 0.81334 0.74645 26.332 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4073900 2140100 1933800 331660 227130 104530 3742300 1913000 1829300 0 0 0 0 0 0 0 0 0 0 0 0 3705 2004 3855 19379;19380;19381 20053 20053 1 AWSDDTSQLGPDK IFRQNLRIALLGGGKAWSDDTSQLGPDKHA GKAWSDDTSQLGPDKHARDVPSLDKYAEER K A W D K H 1 0 0 3 0 1 0 1 0 0 1 1 0 0 1 2 1 1 0 0 0 0 13 0 1418.6314 Q92759 Q92759 128 140 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 9.8823E-07 99.283 By MS/MS By matching By matching By matching 1 1 1 1 0.94733 0.8252 15.225 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0381 1.015 NaN 1 0 Median 0.96842 0.86773 NaN 1 0 Median 0.71732 0.71033 NaN 1 0 Median 0.92669 0.78476 NaN 1 0 Median 17094000 8944400 8149300 0 0 0 0 0 0 6831400 3753800 3077700 5207700 2399300 2808400 3675600 2029400 1646200 1379000 761960 617020 3706 3553 3856 19382;19383;19384;19385 20054;20055 20055 2 AWSPVFR LDSSRYCALLLPLLKAWSPVFRNYIKRAAD ALLLPLLKAWSPVFRNYIKRAADHLEALAA K A W F R N 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 7 0 861.44972 A0A3B3IUB1;Q13144 A0A3B3IUB1 635 641 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes no 2 0.053104 38.818 By MS/MS 1 1.1272 1.0878 NaN 1 Median 1.1272 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3934600 1970800 1963800 3934600 1970800 1963800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3707 443 3857 19386 20056 20056 1 AWSYAMQLK TDNRYLLLVLMDAERAWSYAMQLKQEANTE LMDAERAWSYAMQLKQEANTEPRKRFHLLS R A W L K Q 2 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 1 1 0 0 0 9 0 1096.5376 Q9UHB9 Q9UHB9 134 142 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.0175 41.652 By matching By MS/MS 1 1 1.0503 0.99959 5.9204 2 Median NaN NaN NaN 0 0 Median 1.1113 0.95861 NaN 1 0 Median 0.99257 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7962800 4046500 3916300 0 0 0 2522500 1457700 1064800 5440300 2588800 2851500 0 0 0 0 0 0 0 0 0 3708 4274 3858 19387;19388 20057 20057 1 AWTQVLLGQAEDK EIERILGVRLQAGLRAWTQVLLGQAEDKAE LRAWTQVLLGQAEDKAEVDMDTDAPQVSHK R A W D K A 2 0 0 1 0 2 1 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 13 0 1457.7514 Q14204 Q14204 921 933 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.189E-07 122.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0478 1.0075 8.9673 5 Median 1.0025 1.0061 NaN 1 0 Median 1.1459 1.0075 NaN 1 0 Median 1.0478 1.1175 NaN 1 0 Median 1.1801 1.1431 NaN 1 0 Median 0.79243 0.91611 NaN 1 0 Median NaN NaN NaN 0 0 Median 66963000 32156000 34806000 28993000 13850000 15143000 8311700 3830700 4481000 25202000 12281000 12922000 2912900 1297200 1615700 1543200 897870 645330 0 0 0 3709 2865 3859 19389;19390;19391;19392;19393 20058;20059;20060;20061;20062;20063;20064;20065 20058 8 AWTVEQLR ______________________________ AAAVPQRAWTVEQLRSEQLPKKDIIKFLQE R A W L R S 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 1001.5294 Q00688;G3V5F2 Q00688 9 16 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes no 2 0.0024657 128.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1 1.1461 1.0291 3.6651 8 Median 1.0479 0.98661 0.69095 2 0 Median 1.2367 1.046 NaN 1 0 Median 1.0548 1.0124 NaN 1 0 Median 1.2723 1.0598 0.078218 2 0 Median 1.0164 1.0081 NaN 1 0 Median 1.3422 1.0883 NaN 1 0 Median 201060000 95625000 105430000 90925000 44176000 46749000 12255000 5596500 6658800 79564000 37838000 41727000 13356000 5794700 7561600 3999300 1834000 2165200 956460 386360 570100 3710 2677 3860 19394;19395;19396;19397;19398;19399;19400;19401 20066;20067;20068;20069;20070;20071;20072;20073;20074;20075;20076;20077;20078;20079 20071 14 AWTVLTEYYK AREGQKPPEGFMAPKAWTVLTEYYKSLEKA FMAPKAWTVLTEYYKSLEKA__________ K A W Y K S 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 2 1 2 1 0 0 10 0 1272.639 O43252 O43252 610 619 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.01267 41.029 By MS/MS By matching 1 1 1.3835 1.2318 16.21 2 Median 1.1612 1.0984 NaN 1 0 Median 1.6483 1.3814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19066000 7705700 11360000 8726800 3880800 4846100 10339000 3824900 6514200 0 0 0 0 0 0 0 0 0 0 0 0 3711 1561 3861 19402;19403 20080 20080 1 AWVGGVGNYK SVTPVSLLADPAFIRAWVGGVGNYKLGGNY PAFIRAWVGGVGNYKLGGNYGPTVLVQQEA R A W Y K L 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 1 1 2 0 0 10 0 1049.5294 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 220 229 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2 0.0033139 57.177 By MS/MS By matching 1 1 1.2772 1.1338 11.683 2 Median 1.1287 1.0439 NaN 1 0 Median 1.4453 1.2315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29428000 13085000 16343000 14041000 6936300 7104500 15387000 6148200 9238600 0 0 0 0 0 0 0 0 0 0 0 0 3712 1543 3862 19404;19405 20081 20081 1 AWYGLGQTYEILK QAYRHAIEVNKRDYRAWYGLGQTYEILKMP YRAWYGLGQTYEILKMPFYCLYYYRRAHQL R A W L K M 1 0 0 0 0 1 1 2 0 1 2 1 0 0 0 0 1 1 2 0 0 0 13 0 1540.7926 Q9UJX2 Q9UJX2 401 413 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.00091964 62.303 By matching By MS/MS By matching 1 1 1 0.98875 0.96821 5.7756 3 Median 0.98875 0.96821 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96977 0.96237 NaN 1 0 Median 1.2411 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8089400 4295800 3793600 794160 349150 445010 0 0 0 6647700 3641400 3006300 647600 305300 342300 0 0 0 0 0 0 3713 4300 3863 19406;19407;19408 20082;20083 20083 2 AWYPLGR AEEGFYKFHNWFDDRAWYPLGRIIGGTIYP FHNWFDDRAWYPLGRIIGGTIYPGLMITSA R A W G R I 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 7 0 861.44972 Q8TCJ2;P46977;A0A0C4DH80;E9PN73;E9PI32 P46977 76 82 STT3B;STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B;Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A no no 2 0.0098565 83.229 By MS/MS By MS/MS By MS/MS By matching 2 3 1 3 1.1488 0.99248 4.4794 9 Median 0.95798 0.96002 3.568 2 0 Median 1.1866 0.99248 5.3168 3 0 Median 0.96328 1.0446 NaN 1 0 Median 1.1488 0.99737 3.1604 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19713000 9416900 10296000 7000200 3356800 3643400 8232900 3681700 4551200 3970600 2134200 1836400 509280 244200 265070 0 0 0 0 0 0 3714 2352;3466 3864 19409;19410;19411;19412;19413;19414;19415;19416;19417 20084;20085;20086;20087;20088;20089;20090 20085 7 AYAALAALEK GQKFQGAGSNKKVAKAYAALAALEKLFPDT KKVAKAYAALAALEKLFPDTPLALDANKKK K A Y E K L 5 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1019.5651 Q12906 Q12906 578 587 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.00036244 99.802 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 3 1 1.2778 1.2488 29.365 12 Median 1.3035 1.1483 24.161 3 0 Median 1.2525 1.1114 NaN 1 0 Median 1.2527 1.2972 6.3421 2 0 Median 1.7327 1.495 4.7401 2 0 Median 1.2508 1.2574 53.743 3 2 Median 1.2226 0.99782 NaN 1 0 Median 360720000 136000000 224720000 41462000 12790000 28672000 595690 229700 365990 81876000 38376000 43500000 18318000 6809000 11509000 204400000 71808000 132600000 14065000 5984700 8080100 3715 2769 3865 19418;19419;19420;19421;19422;19423;19424;19425;19426;19427;19428;19429 20091;20092;20093;20094;20095;20096;20097;20098;20099;20100;20101;20102;20103;20104;20105 20091 15 AYAALGLPYMNQPQTQLQPQVPGQQPAQPQTHQQMR SLSNPNPIDPSSMQRAYAALGLPYMNQPQT PGQQPAQPQTHQQMRTLNPLGNNPMNIPAG R A Y M R T 4 1 1 0 0 11 0 2 1 0 3 0 2 0 6 0 2 0 2 1 0 0 36 0 4042.9894 Q92793;I3L466 Q92793 484 519 CREBBP CREB-binding protein yes no 4 0.022533 12.865 By MS/MS 1 0.30909 0.34066 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30909 0.34066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5040100 3333500 1706600 0 0 0 0 0 0 5040100 3333500 1706600 0 0 0 0 0 0 0 0 0 3716 3557 3866 19430 20106 20106 1 AYAALGLPYQVNQMPTQPQVQAK NLSTVSQIDPSSIERAYAALGLPYQVNQMP YQVNQMPTQPQVQAKNQQNQQPGQSPQGMR R A Y A K N 4 0 1 0 0 5 0 1 0 0 2 1 1 0 3 0 1 0 2 2 0 0 23 0 2515.2893 Q09472 Q09472 467 489 EP300 Histone acetyltransferase p300 yes yes 3 0.00011231 28.813 By MS/MS 1 0.61185 0.68101 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61185 0.68101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6146800 3883300 2263500 0 0 0 0 0 0 6146800 3883300 2263500 0 0 0 0 0 0 0 0 0 3717 2748 3867 19431 20107;20108 20107 2 AYAALTDEESR PDKGGDEVMFMRIAKAYAALTDEESRKNWE RIAKAYAALTDEESRKNWEEFGNPDGPQAT K A Y S R K 3 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 11 0 1224.5622 Q9UGP8;A6PVC9 Q9UGP8 148 158 SEC63 Translocation protein SEC63 homolog yes no 2 0.00015157 101.65 By MS/MS By MS/MS 1 1 1.1771 1.0802 13.496 2 Median 1.0119 0.98188 NaN 1 0 Median 1.3693 1.1884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5838000 2726100 3111900 3416400 1741400 1675000 2421600 984680 1436900 0 0 0 0 0 0 0 0 0 0 0 0 3718 4264 3868 19432;19433 20109;20110;20111;20112 20112 4 AYADFYR VAALYKFRVADQRKKAYADFYRNYDVMKDF RVADQRKKAYADFYRNYDVMKDFEEMRKAG K A Y Y R N 2 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 7 0 904.40792 P09669 P09669 48 54 COX6C Cytochrome c oxidase subunit 6C yes yes 2 0.001726 129.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 0.83911 0.80295 14.691 8 Median 0.69205 0.66817 NaN 1 0 Median 1.1729 0.97522 5.1314 2 0 Median 0.74856 0.7539 13.594 2 0 Median 0.98678 0.77681 NaN 1 0 Median 0.78364 0.81708 10.862 2 0 Median NaN NaN NaN 0 0 Median 204230000 105620000 98612000 100000000 57685000 42320000 85722000 37608000 48114000 7080500 3887900 3192600 2478700 1218700 1260000 8948900 5222700 3726200 0 0 0 3719 1921 3869 19434;19435;19436;19437;19438;19439;19440;19441 20113;20114;20115;20116;20117;20118;20119;20120;20121;20122 20120 10 AYAEELASR GRWAVVSGATDGIGKAYAEELASRGLNIIL TDGIGKAYAEELASRGLNIILISRNEEKLQ K A Y S R G 3 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1008.4876 Q3SXM5;H3BQI7;H3BT52 Q3SXM5 82 90 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 2 0.013542 69.423 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3720 3013 3870 19442 20123 20123 1 AYAFVHTGDNSR IQTVPNLDWLSVWIKAYAFVHTGDNSRAIS WIKAYAFVHTGDNSRAISTICSLEKKSLLR K A Y S R A 2 1 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 1 0 0 12 0 1336.616 Q9UJX3 Q9UJX3 242 253 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 3 0.00033447 55.452 By MS/MS By matching 1 1 1.2597 1.2079 19.087 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0055 1.0554 NaN 1 0 Median 1.5781 1.3824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2847500 1432700 1414800 0 0 0 0 0 0 2569900 1313700 1256200 277580 119050 158530 0 0 0 0 0 0 3721 4301 3871 19443;19444 20124 20124 1 AYAGDKAEEIGR PQVQQVQDDGHRLQKAYAGDKAEEIGRHMQ LQKAYAGDKAEEIGRHMQAVAEAWAQLQGS K A Y G R H 3 1 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 0 1 0 0 0 12 1 1278.6204 O15020 O15020 1869 1880 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.0096251 28.327 By MS/MS 1 1.0384 1.2336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0384 1.2336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1234000 531910 702090 0 0 0 0 0 0 1234000 531910 702090 0 0 0 0 0 0 0 0 0 3722 1512 3872 19445 20125;20126 20125 2 AYALAFAER GRVVLVTGAGAGLGRAYALAFAERGALVVV GAGLGRAYALAFAERGALVVVNDLGGDFKG R A Y E R G 4 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 9 0 1010.5185 A0A2R8YD50;P51659;E7ER27;A0A2R8YDT8;A0A2R8YF45;A0A2R8YEG2 A0A2R8YD50 24 32 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.2824 1.0936 15.596 7 Median 1.0913 1.0267 0.065094 2 0 Median NaN NaN NaN 0 0 Median 1.1188 1.1197 21.316 2 0 Median 1.6265 1.3788 7.1534 2 0 Median NaN NaN NaN 0 0 Median 1.3345 1.0936 NaN 1 0 Median 59874000 27516000 32358000 34450000 16483000 17967000 0 0 0 21898000 9637800 12260000 3359800 1310200 2049600 0 0 0 166470 85587 80885 3723 393 3873 19446;19447;19448;19449;19450;19451;19452 20127;20128;20129;20130;20131;20132;20133;20134;20135;20136;20137;20138 20132 12 AYANHMINNHVPR YVHCSLCRYSTCCSRAYANHMINNHVPRKS SRAYANHMINNHVPRKSPKYLALFKNSVSG R A Y P R K 2 1 3 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 1 1 0 0 13 0 1535.7416 Q7Z3K3;H0YCT3 Q7Z3K3 785 797 POGZ Pogo transposable element with ZNF domain yes no 3 0.00018886 67.385 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.78689 0.74768 16.693 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81871 0.88947 NaN 1 1 Median 0.84296 0.74467 NaN 1 0 Median 0.74842 0.83265 15.224 2 0 Median 0.74178 0.60987 NaN 1 0 Median 9441100 5350900 4090300 0 0 0 0 0 0 1517600 882040 635580 861960 425740 436220 6553800 3770400 2783400 507790 272730 235060 3724 3241 3874 19453;19454;19455;19456;19457 20139;20140;20141;20142 20140 4 AYAPEQLQK YVICQDGSNLTASQRAYAPEQLQKQDNLTI LTASQRAYAPEQLQKQDNLTIDTQYYLAQQ R A Y Q K Q 2 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 9 0 1046.5397 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1191 1199 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.011881 61.999 By MS/MS 1 0.60249 0.53415 NaN 1 Median NaN NaN NaN 0 0 Median 0.60249 0.53415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5915500 4297000 1618500 0 0 0 5915500 4297000 1618500 0 0 0 0 0 0 0 0 0 0 0 0 3725 26 3875 19458 20143 20143 1 AYAQGISR SAAVTALNSESNFARAYAQGISRTKYWELI SESNFARAYAQGISRTKYWELIYEDSMDLI R A Y S R T 2 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 8 0 864.44537 O75390;B4DJV2;A0A0C4DGI3;H0YH82;F8VPA1;F8W1S4;F8VPF9;F8VR34;F8VRI6 O75390 184 191 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2742 1.1082 11.629 5 Median 0.89955 0.89739 NaN 1 0 Median 1.2999 1.1115 0.42191 2 1 Median 0.98292 0.98541 NaN 1 0 Median 1.3834 1.2056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29657000 13575000 16082000 3224800 1702000 1522800 19684000 8638800 11045000 5563400 2711000 2852400 1184900 523300 661620 0 0 0 0 0 0 3726 594 3876 19459;19460;19461;19462;19463 20144;20145;20146;20147;20148;20149;20150 20147 7 AYAQQLADWAR GDLVSCFQERARIEKAYAQQLADWARKWRG RIEKAYAQQLADWARKWRGTVEKGPQYGTL K A Y A R K 4 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 11 0 1291.6309 A0A0C4DGG1;Q9UKS6;E9PIY1;E9PJ75;E9PNM9;E9PJ33 A0A0C4DGG1 52 62 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2 0.00011141 122.13 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.3145 1.2005 13.607 6 Median 1.2344 1.1811 NaN 1 0 Median 1.3997 1.2201 NaN 1 0 Median 1.0688 1.0496 NaN 1 0 Median 1.5429 1.3167 9.6072 2 0 Median 0.95003 0.95341 NaN 1 0 Median NaN NaN NaN 0 0 Median 34791000 16492000 18299000 10643000 4985200 5657300 1088300 494230 594070 16400000 7851400 8548700 1365500 514550 850950 5295000 2646600 2648300 0 0 0 3727 244 3877 19464;19465;19466;19467;19468;19469 20151;20152;20153;20154;20155;20156 20152 6 AYAQQLTEWAR SDLMNCLHERARIEKAYAQQLTEWARRWRQ RIEKAYAQQLTEWARRWRQLVEKGPQYGTV K A Y A R R 3 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 11 0 1335.6571 A0A0U1RR22;Q9UNF0;B0QYG7;B0QYG8 A0A0U1RR22 54 64 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 9.1196E-05 149.94 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1.1722 0.98538 19.845 6 Median 1.3167 1.2507 NaN 1 0 Median 0.98693 1.0062 30.797 2 1 Median 0.79727 0.8537 NaN 1 0 Median 1.321 1.1065 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0435 0.87751 NaN 1 0 Median 26712000 12270000 14442000 12026000 5099900 6926200 5243600 2551100 2692500 3873600 2249600 1624000 4607200 1927800 2679400 0 0 0 961610 442020 519600 3728 307 3878 19470;19471;19472;19473;19474;19475 20157;20158;20159;20160 20160 4 AYAVGDVEK EKLNQLVEAKKCYWRAYAVGDVEKMALVKL KKCYWRAYAVGDVEKMALVKLAKLHEQLTE R A Y E K M 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 9 0 950.47091 Q9UJX2 Q9UJX2 459 467 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.0073226 51.854 By MS/MS By matching 2 1 0.88278 0.94073 12.818 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85496 0.89025 7.8002 2 0 Median 1.2677 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3200800 1712100 1488700 0 0 0 0 0 0 2796400 1509000 1287400 404420 203140 201280 0 0 0 0 0 0 3729 4300 3879 19476;19477;19478 20161;20162 20161 2 AYDATHLVK KAFSGYLGTDQSKWKAYDATHLVKSYPGSQ DQSKWKAYDATHLVKSYPGSQLDILIDQGK K A Y V K S 2 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 1016.5291 P10768;X6RA14;H7BZT7;U3KQT1 P10768 201 209 ESD S-formylglutathione hydrolase yes no 2 0.00073228 101.54 By MS/MS By MS/MS By matching 1 2 1 1.0851 0.94356 8.8705 4 Median 1.1287 1.0227 NaN 1 0 Median 1.113 0.94356 7.6928 2 0 Median NaN NaN NaN 0 0 Median 0.9948 0.84815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70109000 32076000 38033000 49723000 22818000 26905000 19502000 8815500 10686000 0 0 0 883690 442310 441390 0 0 0 0 0 0 3730 1946 3880 19479;19480;19481;19482 20163;20164;20165 20165 3 AYDGTTYLPGIVGLNNIK KQQIANLDKQAKLSRAYDGTTYLPGIVGLN GTTYLPGIVGLNNIKANDYANAVLQALSNV R A Y I K A 1 0 2 1 0 0 0 3 0 2 2 1 0 0 1 0 2 0 2 1 0 0 18 0 1907.9993 B9A018;Q53GS9;A0A087X1B2;A0A087WW31 B9A018 214 231 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 9.614E-06 55.401 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.84565 0.82689 5.6694 5 Median NaN NaN NaN 0 0 Median 0.91455 0.79014 NaN 1 0 Median 0.83351 0.83217 0.9011 2 0 Median 1.0739 0.91521 NaN 1 0 Median 0.81487 0.80544 NaN 1 0 Median NaN NaN NaN 0 0 Median 45662000 23425000 22236000 0 0 0 1961500 774140 1187400 40857000 21242000 19614000 2587400 1291100 1296300 256000 117940 138060 0 0 0 3731 654 3881 19483;19484;19485;19486;19487 20166;20167;20168;20169;20170;20171 20167 6 AYDIAGSTK MQSLDKDIVALMVRRAYDIAGSTKDVKVFL ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R A Y T K D 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 9 0 924.45526 P11388 P11388 243 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00097308 87.639 By matching By MS/MS By MS/MS 1 1 1 1.2229 1.2858 43.548 3 Median NaN NaN NaN 0 0 Median 0.7194 0.62294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2229 1.2858 NaN 1 0 Median 1.587 1.3599 NaN 1 0 Median 6250100 2657500 3592500 0 0 0 529690 302440 227250 0 0 0 0 0 0 3596600 1539900 2056700 2123700 815160 1308600 3732 1963 3882 19488;19489;19490 20172;20173;20174;20175 20173 4 AYDIYSR PLIPIVVEQTGRGERAYDIYSRLLRERIVC EQTGRGERAYDIYSRLLRERIVCVMGPIDD R A Y S R L 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 0 7 0 886.41848 Q16740;M0QYV5 Q16740 72 78 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial;ATP-dependent Clp protease proteolytic subunit yes no 2 0.038095 46.016 By MS/MS 1 0.9184 0.77995 NaN 1 Median NaN NaN NaN 0 0 Median 0.9184 0.77995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1863900 1105200 758730 0 0 0 1863900 1105200 758730 0 0 0 0 0 0 0 0 0 0 0 0 3733 2995 3883 19491 20176 20176 1 AYDTDAGPVFVK RAFGGPGAGCISEGRAYDTDAGPVFVKVNR EGRAYDTDAGPVFVKVNRRTQARQMFEGEV R A Y V K V 2 0 0 2 0 0 0 1 0 0 0 1 0 1 1 0 1 0 1 2 0 0 12 0 1281.6241 Q9H479 Q9H479 30 41 FN3K Fructosamine-3-kinase yes yes 2 4.6895E-06 102.61 By MS/MS By MS/MS 2 1 1.0544 0.94851 36.701 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75955 0.73171 NaN 1 1 Median 1.4638 1.2295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27163000 13603000 13560000 0 0 0 0 0 0 20870000 11038000 9832000 6293100 2565100 3728000 0 0 0 0 0 0 3734 3962 3884 19492;19493;19494 20177;20178;20179;20180 20180 4 AYEAAASALQIATHTAFVAK STESCNQQLDLALCRAYEAAASALQIATHT ASALQIATHTAFVAKAMQADISQAAQILSS R A Y A K A 8 0 0 0 0 1 1 0 1 1 1 1 0 1 0 1 2 0 1 1 0 0 20 0 2033.0582 P42166 P42166 572 591 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 7.754E-09 67.995 By MS/MS By MS/MS By MS/MS By matching 4 2 2 2 1.0827 0.99451 21.924 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0109 0.95677 10.344 4 0 Linear 1.4595 1.2156 25.244 2 0 Median 1.2483 1.3577 26.668 2 0 Median 1.1238 0.98115 7.6688 2 0 Median 55212000 26880000 28332000 0 0 0 0 0 0 47251000 23244000 24006000 2436100 1039900 1396200 4913200 2313600 2599600 612380 282330 330050 3735 2306 3885 19495;19496;19497;19498;19499;19500;19501;19502;19503;19504 20181;20182;20183;20184;20185;20186;20187;20188 20182 8 AYEDQTKPVLEYYQK QREDDKPETVIKRLKAYEDQTKPVLEYYQK AYEDQTKPVLEYYQKKGVLETFSGTETNKI K A Y Q K K 1 0 0 1 0 2 2 0 0 0 1 2 0 0 1 0 1 0 3 1 0 0 15 1 1873.9098 Q9UIJ7 Q9UIJ7 175 189 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 3 0.00032509 43.813 By MS/MS By matching By matching 1 1 1 1.0092 0.93282 16.56 3 Median 0.72199 0.73255 NaN 1 0 Median 1.0201 0.93282 NaN 1 0 Median 1.0092 1.0057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50443000 26246000 24198000 37527000 21461000 16066000 3909800 1959600 1950200 9007100 2825800 6181300 0 0 0 0 0 0 0 0 0 3736 4291 3886 19505;19506;19507 20189;20190 20190 2 AYEFAER SAVQVLIEHIGNLDRAYEFAERCNEPAVWS EHIGNLDRAYEFAERCNEPAVWSQLAKAQL R A Y E R C 2 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 884.40283 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 1099 1105 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.0017105 110.61 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 2 1.1473 1.1141 11.515 11 Median 1.1487 1.118 5.0588 2 0 Median 1.3402 1.1296 16.963 4 0 Median 1.0031 1.101 4.8149 2 0 Median 1.2697 1.1141 NaN 1 0 Median 0.98498 1.0429 18.784 2 0 Median NaN NaN NaN 0 0 Median 71839000 30672000 41167000 12974000 5431700 7542800 45304000 18281000 27023000 6948200 3681700 3266500 1804400 756600 1047800 4807300 2520600 2286700 0 0 0 3737 44 3887 19508;19509;19510;19511;19512;19513;19514;19515;19516;19517;19518 20191;20192;20193;20194;20195;20196;20197;20198;20199;20200 20192 10 AYELALYLR VMGKEGVHGGTLNKKAYELALYLRRSDV__ GTLNKKAYELALYLRRSDV___________ K A Y L R R 2 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 9 0 1110.6073 C9J0J7;G5E9Q6 C9J0J7 79 87 PFN2 Profilin yes no 2 0.00067915 105.12 By MS/MS By MS/MS By MS/MS 1 1 1 1.1066 1.1022 15.865 3 Median 1.1066 1.0767 NaN 1 0 Median 1.7004 1.4328 NaN 1 0 Median 1.0859 1.1022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9874500 4529200 5345300 8038400 3776400 4262000 745380 243740 501640 1090700 509060 581600 0 0 0 0 0 0 0 0 0 3738 668 3888 19519;19520;19521 20201;20202;20203;20204 20202 4 AYELALYLRR VMGKEGVHGGTLNKKAYELALYLRRSDV__ TLNKKAYELALYLRRSDV____________ K A Y R R S 2 2 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 10 1 1266.7085 C9J0J7;G5E9Q6 C9J0J7 79 88 PFN2 Profilin yes no 3 0.0024183 44.309 By MS/MS 1 1.2133 1.2106 NaN 1 Median 1.2133 1.2106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108700 1438100 1670600 3108700 1438100 1670600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3739 668 3889 19522 20205;20206 20205 2 AYEQAGMMLK AVAHENNRALFHAAKAYEQAGMMLKEMQKL FHAAKAYEQAGMMLKEMQKLPEAVQLIEKA K A Y L K E 2 0 0 0 0 1 1 1 0 0 1 1 2 0 0 0 0 0 1 0 0 0 10 0 1140.5308 Q99747;J3KTJ6 Q99747 77 86 NAPG Gamma-soluble NSF attachment protein yes no 2 0.035853 63.565 By MS/MS By MS/MS 1 1 1.4697 1.3086 36.525 2 Median 1.8008 1.6942 NaN 1 0 Median 1.1994 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8683700 3369900 5313800 6483300 2438600 4044800 2200300 931320 1269000 0 0 0 0 0 0 0 0 0 0 0 0 3740 3768 3890 19523;19524 20207;20208 20208 1 AYEQALNLYTELLNNR EHSYCTMIRGMVKHRAYEQALNLYTELLNN YEQALNLYTELLNNRLHADVYTFNALIEAT R A Y N R L 2 1 3 0 0 1 2 0 0 0 4 0 0 0 0 0 1 0 2 0 0 0 16 0 1923.969 Q96EY7 Q96EY7 271 286 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.00012379 66.262 By MS/MS By MS/MS By matching 2 1 1 0.98974 1.0802 7.1636 4 Linear 0.98974 0.9711 5.4097 2 0 Median 1.2873 1.1105 NaN 1 0 Median 0.96035 0.9902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3570000 1687200 1882800 1583400 792120 791230 1461300 589940 871340 525420 305170 220250 0 0 0 0 0 0 0 0 0 3741 3644 3891 19525;19526;19527;19528 20209;20210;20211;20212 20211 4 AYETMAGAGVPFSANGRPLASGIR QLSQNRGLGGIMVKRAYETMAGAGVPFSAN VPFSANGRPLASGIRSSSQPAAKRQKLNPA R A Y I R S 5 2 1 0 0 0 1 4 0 1 1 0 1 1 2 2 1 0 1 1 0 0 24 1 2392.1958 O94776 O94776 561 584 MTA2 Metastasis-associated protein MTA2 yes yes 3 0.018264 22.123 By MS/MS 1 0.78683 0.87804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78683 0.87804 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7299600 3499900 3799700 0 0 0 0 0 0 7299600 3499900 3799700 0 0 0 0 0 0 0 0 0 3742 1723 3892 19529 20213 20213 1 AYEYVECPIR TCEKKTYSVPAHQERAYEYVECPIRGTAAE AHQERAYEYVECPIRGTAAENKENLDPSNL R A Y I R G 1 1 0 0 1 0 2 0 0 1 0 0 0 0 1 0 0 0 2 1 0 0 10 0 1298.5965 P53701 P53701 60 69 HCCS Cytochrome c-type heme lyase yes yes 2 0.00035909 83.005 By MS/MS 1 1.1293 0.94521 NaN 1 Median NaN NaN NaN 0 0 Median 1.1293 0.94521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3153300 1499800 1653500 0 0 0 3153300 1499800 1653500 0 0 0 0 0 0 0 0 0 0 0 0 3743 2474 3893 19530 20214 20214 1 AYFDLQTHVIQVPQGK EFNSNLNRERMEERRAYFDLQTHVIQVPQG YFDLQTHVIQVPQGKYKVLPTERTKVSSYP R A Y G K Y 1 0 0 1 0 3 0 1 1 1 1 1 0 1 1 0 1 0 1 2 0 0 16 0 1842.9628 S5FZ81;Q8WUB8 S5FZ81 224 239 PHF10 PHD finger protein 10 yes no 3 0.052868 10.816 By MS/MS By matching 2 1 0.89946 0.88763 11.852 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8566 0.84701 6.6248 2 0 Median 1.1724 1.0228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11969000 6804500 5164100 0 0 0 0 0 0 11424000 6556600 4867600 544440 247940 296500 0 0 0 0 0 0 3744 3488 3894 19531;19532;19533 20215;20216;20217 20216 3 AYFETEK NQEERDKGKTVEVGRAYFETEKKHFTILDA GKTVEVGRAYFETEKKHFTILDAPGHKSFV R A Y E K K 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 7 0 886.40725 P15170;H3BR35;H3BSV8 P15170 145 151 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.043995 43.124 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.5656 1.5254 38.168 4 Median 1.0818 1.098 NaN 1 0 Median 1.3872 1.2378 NaN 1 0 Median 1.7669 1.8797 NaN 1 0 Median 2.8283 2.5122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5410100 2105100 3305000 928300 313440 614860 1224200 509300 714890 3045200 1178500 1866700 212360 103850 108510 0 0 0 0 0 0 3745 2016 3895 19534;19535;19536;19537 20218;20219 20218 2 AYFETEKK NQEERDKGKTVEVGRAYFETEKKHFTILDA KTVEVGRAYFETEKKHFTILDAPGHKSFVP R A Y K K H 1 0 0 0 0 0 2 0 0 0 0 2 0 1 0 0 1 0 1 0 0 0 8 1 1014.5022 P15170;H3BR35;H3BSV8 P15170 145 152 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.026321 47.849 By MS/MS By matching 2 1 0.89119 0.91821 15.458 3 Median NaN NaN NaN 0 0 Median 0.87477 0.83305 13.766 2 0 Median 0.89119 1.0257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4729900 2443700 2286100 0 0 0 3510300 1824100 1686100 1219600 619600 600010 0 0 0 0 0 0 0 0 0 3746 2016 3896 19538;19539;19540 20220 20220 1 AYFHLLNQIAPK WQKINNFSADIKDSKAYFHLLNQIAPKGQK DSKAYFHLLNQIAPKGQKEGEPRIDINMSG K A Y P K G 2 0 1 0 0 1 0 0 1 1 2 1 0 1 1 0 0 0 1 0 0 0 12 0 1413.7769 P13797;A0A0A0MSQ0;H7C4N2;Q14651;C9JAM8 P13797 301 312 PLS3;PLS1 Plastin-3;Plastin-1 no no 2;3 0.00014355 137 By MS/MS By matching By MS/MS By MS/MS 5 2 2 2 0.95574 0.87821 21.555 11 Median 0.86624 0.80921 15.091 5 1 Median 1.0897 0.96085 43.769 2 0 Median 0.98649 0.98929 21.969 2 0 Median 1.1047 0.94794 2.9558 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 290220000 139680000 150540000 246130000 119110000 127020000 2134000 1050300 1083600 39738000 18448000 21290000 2221000 1071400 1149700 0 0 0 0 0 0 3747 1995;2884 3897 19541;19542;19543;19544;19545;19546;19547;19548;19549;19550;19551 20221;20222;20223;20224;20225;20226;20227;20228;20229;20230;20231;20232 20226 12 AYFMQLQTR VDSTAESCPKCEHPRAYFMQLQTRSADEPM KCEHPRAYFMQLQTRSADEPMTTFYKCCNA R A Y T R S 1 1 0 0 0 2 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 9 0 1156.5699 Q9Y2Y1 Q9Y2Y1 77 85 POLR3K DNA-directed RNA polymerase III subunit RPC10 yes yes 2 0.0008527 94.302 By MS/MS By matching 1 1 1.2701 1.2606 22.408 2 Median 1.1058 1.0759 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4588 1.477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10422000 5126000 5295700 8150900 4024400 4126500 0 0 0 2270800 1101600 1169200 0 0 0 0 0 0 0 0 0 3748 4397 3898 19552;19553 20233;20234 20234 2 AYGELPEHAK DVILKYNADEARSLKAYGELPEHAKINETD ARSLKAYGELPEHAKINETDTFGPGDDDEI K A Y A K I 2 0 0 0 0 0 2 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 10 0 1113.5455 P47813;X6RAC9;O14602;A6NJH9 P47813 105 114 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 0.0010001 69.423 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.94381 0.82445 12.256 7 Median 0.94381 0.88969 NaN 1 0 Median 0.96732 0.81896 0.94497 2 0 Median 1.0184 0.97438 13.385 2 0 Median 0.91102 0.7543 3.7875 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73841000 36707000 37134000 17561000 8832800 8727900 23429000 11494000 11935000 29032000 14398000 14634000 3818800 1981900 1837000 0 0 0 0 0 0 3749 2355 3899 19554;19555;19556;19557;19558;19559;19560 20235;20236;20237;20238;20239;20240;20241;20242;20243;20244;20245;20246;20247 20247 13 AYGENIGYSEK FTNLTMDTEIRIECKAYGENIGYSEKDRFQ IECKAYGENIGYSEKDRFQGRFDVKIEVKS K A Y E K D 1 0 1 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 2 0 0 0 11 0 1229.5564 P05026 P05026 278 288 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes yes 2 0.00016143 81.338 By MS/MS 1 1.4471 1.2354 NaN 1 Median NaN NaN NaN 0 0 Median 1.4471 1.2354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3197300 1479700 1717600 0 0 0 3197300 1479700 1717600 0 0 0 0 0 0 0 0 0 0 0 0 3750 1858 3900 19561 20248 20248 1 AYGPGIEPTGNMVK PGAPLRPKLNPKKARAYGPGIEPTGNMVKK RAYGPGIEPTGNMVKKRAEFTVETRSAGQG R A Y V K K 1 0 1 0 0 0 1 3 0 1 0 1 1 0 2 0 1 0 1 1 0 0 14 0 1432.7021 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 286 299 FLNA Filamin-A no no 2 2.8504E-08 106.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 3 3 2 0.83851 0.81259 14.821 19 Median 0.91081 0.86458 12.337 7 1 Median 0.76563 0.67768 4.3067 4 0 Median 0.80511 0.88464 7.2722 3 0 Median 0.76903 0.7638 7.5008 3 0 Median 0.93886 0.97668 10.006 2 0 Median NaN NaN NaN 0 0 Median 717110000 381280000 335830000 295100000 153850000 141260000 328610000 177570000 151040000 64751000 34366000 30385000 16757000 9322700 7434500 11890000 6177900 5712400 0 0 0 3751 2088;3120 3901;3902 19562;19563;19564;19565;19566;19567;19568;19569;19570;19571;19572;19573;19574;19575;19576;19577;19578;19579;19580;19581 20249;20250;20251;20252;20253;20254;20255;20256;20257;20258;20259;20260;20261;20262;20263;20264;20265;20266;20267;20268 20254 851 20 AYGPGIEPTGNMVKK PGAPLRPKLNPKKARAYGPGIEPTGNMVKK AYGPGIEPTGNMVKKRAEFTVETRSAGQGE R A Y K K R 1 0 1 0 0 0 1 3 0 1 0 2 1 0 2 0 1 0 1 1 0 0 15 1 1560.797 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 286 300 FLNA Filamin-A no no 3 0.0005772 38.028 By MS/MS 1 0.58589 0.63837 NaN 1 Median 0.58589 0.63837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9866400 5325500 4540900 9866400 5325500 4540900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3752 2088;3120 3903 19582 20269 20269 1 AYGPGLEK FIHPATGGYNPDLVRAYGPGLEKSGCIVNN YNPDLVRAYGPGLEKSGCIVNNLAEFTVDP R A Y E K S 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 0 0 0 1 0 0 0 8 0 833.42832 O75369;E7EN95 O75369 650 657 FLNB Filamin-B yes no 2 0.011499 75.213 By MS/MS 1 1.1878 1.0424 NaN 1 Median NaN NaN NaN 0 0 Median 1.1878 1.0424 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7612700 3080400 4532300 0 0 0 7612700 3080400 4532300 0 0 0 0 0 0 0 0 0 0 0 0 3753 1664 3904 19583 20270 20270 1 AYGQALAK SLPSYKVGDKIATRKAYGQALAKLGHASDR DKIATRKAYGQALAKLGHASDRIIALDGDT K A Y A K L 3 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 0 820.4443 P29401;A0A0B4J1R6 P29401 320 327 TKT Transketolase yes no 2 0.0034996 92.467 By MS/MS By MS/MS 1 1 1.1135 0.99983 11.479 2 Median 1.1275 1.0844 NaN 1 0 Median 1.0997 0.92188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13092000 6186800 6905000 3259700 1511300 1748400 9832100 4675500 5156600 0 0 0 0 0 0 0 0 0 0 0 0 3754 2173 3905 19584;19585 20271;20272;20273 20273 3 AYGTNYIETLR GWNQIQFNLLDFTRRAYGTNYIETLRVQIH FTRRAYGTNYIETLRVQIHANCRIRRVYFS R A Y L R V 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1299.6459 Q9Y6A4 Q9Y6A4 143 153 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.00014501 103.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.1288 1.0068 16.254 6 Median 1.1162 1.086 16.763 2 0 Median 1.7104 1.4529 NaN 1 0 Median 1.0428 1.0015 NaN 1 0 Median 1.2218 1.0122 NaN 1 0 Median 0.98817 0.99213 NaN 1 0 Median NaN NaN NaN 0 0 Median 59999000 27921000 32079000 18460000 8295100 10165000 1767400 734400 1033000 27957000 13178000 14779000 2643800 1139300 1504500 9171000 4573800 4597200 0 0 0 3755 4486 3906 19586;19587;19588;19589;19590;19591 20274;20275;20276;20277;20278;20279 20276 6 AYHEQLSVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLSVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 1 1 0 1 2 0 0 24 0 2749.284 P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 281 304 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 3 2.2019E-12 59.539 By MS/MS By MS/MS 1 2 0.88149 0.78445 4.6334 3 Median 0.83707 0.78445 NaN 1 0 Median 0.92352 0.78406 6.5526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14964000 6995300 7968400 7097000 3607300 3489700 7866700 3388000 4478800 0 0 0 0 0 0 0 0 0 0 0 0 3756 2633;3212 3907 19592;19593;19594 20280;20281;20282 20281 3 AYHEQLTVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLTVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 0 2 0 1 2 0 0 24 0 2763.2996 Q9BQE3;F5H5D3;A0A1W2PQM2 Q9BQE3 281 304 TUBA1C Tubulin alpha-1C chain yes no 3 6.1929E-05 31.27 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.84268 0.76657 26.569 4 Median 0.82155 0.76401 NaN 1 0 Median 0.82355 0.70714 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86225 0.76913 NaN 1 0 Median 1.3235 1.2626 NaN 1 0 Median NaN NaN NaN 0 0 Median 16424000 8287000 8137500 10391000 5220700 5170200 2155800 1240000 915750 0 0 0 416740 319170 97568 3461000 1507100 1953900 0 0 0 3757 1034 3908 19595;19596;19597;19598 20283;20284;20285 20284 3 AYHLQDDGTQTVR NQEEHIEWAKKNTARAYHLQDDGTQTVRMV ARAYHLQDDGTQTVRMVSHFYGNGDICDIT R A Y V R M 1 1 0 2 0 2 0 1 1 0 1 0 0 0 0 0 2 0 1 1 0 0 13 0 1502.7114 Q96DZ1 Q96DZ1 397 409 ERLEC1 Endoplasmic reticulum lectin 1 yes yes 3 0.064197 20.124 By MS/MS 1 1.4813 1.2887 NaN 1 Median NaN NaN NaN 0 0 Median 1.4813 1.2887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1398200 539290 858870 0 0 0 1398200 539290 858870 0 0 0 0 0 0 0 0 0 0 0 0 3758 3630 3909 19599 20286 20286 1 AYHNSPAYLAYINAK NEYEAEKIEYNESMKAYHNSPAYLAYINAK AYHNSPAYLAYINAKSRAEAALEEESRQRQ K A Y A K S 4 0 2 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 3 0 0 0 15 0 1694.8417 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85 Q969G3 132 146 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 7.3813E-08 147.91 By MS/MS By MS/MS By matching 4 2 1 0.7948 0.76901 19.103 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92277 0.87994 19.601 4 0 Linear 1.0412 0.91054 3.2163 2 0 Median 0.69849 0.66504 NaN 1 0 Median NaN NaN NaN 0 0 Median 99283000 51561000 47722000 0 0 0 0 0 0 83759000 43973000 39786000 9710900 4466800 5244100 5812500 3120800 2691700 0 0 0 3759 389 3910 19600;19601;19602;19603;19604;19605;19606 20287;20288;20289;20290;20291;20292;20293 20290 7 AYIAYELNSVQHR NQVVRMAALEVYVRRAYIAYELNSVQHRQL RRAYIAYELNSVQHRQLKDNTCVVEFQFML R A Y H R Q 2 1 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 2 1 0 0 13 0 1562.7841 Q13085 Q13085 1157 1169 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 3 0.00026468 61.375 By MS/MS 1 1.446 1.2231 NaN 1 Median NaN NaN NaN 0 0 Median 1.446 1.2231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2650200 1118200 1532000 0 0 0 2650200 1118200 1532000 0 0 0 0 0 0 0 0 0 0 0 0 3760 2784 3911 19607 20294;20295 20294 2 AYIDSFR TERALHHGIDLEKIKAYIDSFRFGAPPHAG GIDLEKIKAYIDSFRFGAPPHAGGGIGLER K A Y F R F 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 7 0 870.42357 P14868;H7BZ35 P14868 454 460 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.012521 88.734 By MS/MS 1 1.2286 1.1854 NaN 1 Median 1.2286 1.1854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8213600 3973100 4240400 8213600 3973100 4240400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3761 2012 3912 19608 20296 20296 1 AYILNLVK VSDYAQMDRVLREERAYILNLVKQIKKTGC RVLREERAYILNLVKQIKKTGCNVLLIQKS R A Y V K Q 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 8 0 932.5695 P50991 P50991 281 288 CCT4 T-complex protein 1 subunit delta yes yes 2 0.008475 62.714 By MS/MS By matching 3 1 1.2361 1.1785 8.4345 4 Median 1.2647 1.1837 1.1503 3 0 Median 1.1263 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57208000 25248000 31960000 56710000 25040000 31670000 498200 207750 290460 0 0 0 0 0 0 0 0 0 0 0 0 3762 2424 3913 19609;19610;19611;19612 20297;20298;20299;20300 20297 4 AYINKVEELK AWNELKGTSKEDAMKAYINKVEELKKKYGI EDAMKAYINKVEELKKKYGI__________ K A Y L K K 1 0 1 0 0 0 2 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 10 1 1205.6656 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 129 138 DBI Acyl-CoA-binding protein yes no 2;3 3.9432E-15 190.02 By MS/MS By MS/MS 2 2 1.1415 1.0285 8.3652 4 Median 1.0168 0.95217 7.3289 2 0 Median 1.2407 1.0756 2.7637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 227440000 102520000 124930000 70364000 35074000 35290000 157080000 67444000 89635000 0 0 0 0 0 0 0 0 0 0 0 0 3763 193 3914 19613;19614;19615;19616 20301;20302;20303;20304;20305;20306;20307;20308 20305 8 AYINKVEELKK AWNELKGTSKEDAMKAYINKVEELKKKYGI DAMKAYINKVEELKKKYGI___________ K A Y K K K 1 0 1 0 0 0 2 0 0 1 1 3 0 0 0 0 0 0 1 1 0 0 11 2 1333.7606 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 129 139 DBI Acyl-CoA-binding protein yes no 2;3 2.5558E-09 128.27 By MS/MS By MS/MS By MS/MS 2 3 1 0.95261 0.96215 27.247 5 Median 0.79634 0.81474 23.518 2 0 Median 1.2337 1.2083 27.74 2 0 Median 0.80319 0.89045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112040000 51641000 60398000 55991000 28375000 27616000 51992000 21124000 30868000 4056200 2142300 1913900 0 0 0 0 0 0 0 0 0 3764 193 3915 19617;19618;19619;19620;19621;19622 20309;20310;20311;20312;20313;20314;20315 20315 7 AYIQENLELVEK HGGGPTVTAGLPLPKAYIQENLELVEKGFS LPKAYIQENLELVEKGFSNLKKQIENARMF K A Y E K G 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 12 0 1447.7559 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 722 733 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 5.4737E-06 98.943 By MS/MS By matching By MS/MS 1 1 1 1.0661 1.0737 3.1173 3 Median 1.0661 1.0279 NaN 1 0 Median 1.2127 1.0737 NaN 1 0 Median 1.0006 1.0919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32934000 16224000 16710000 20046000 9849600 10197000 1920900 834100 1086800 10967000 5540500 5426700 0 0 0 0 0 0 0 0 0 3765 1968 3916 19623;19624;19625 20316;20317;20318 20318 3 AYIVQLQIEDLTR MPTVIPPGLTREQERAYIVQLQIEDLTRKL ERAYIVQLQIEDLTRKLRTGDLGIPPNPED R A Y T R K 1 1 0 1 0 2 1 0 0 2 2 0 0 0 0 0 1 0 1 1 0 0 13 0 1560.8512 Q15637;C9J792 Q15637 51 63 SF1 Splicing factor 1 yes no 2 2.0552E-06 94.297 By MS/MS By MS/MS By matching 2 3 2 1.1656 1.0138 26.338 6 Median NaN NaN NaN 0 0 Median 1.0601 0.91716 36.361 2 1 Median 0.90131 0.93337 45.029 2 1 Median 1.1656 1.0138 2.0683 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9725000 4779900 4945000 0 0 0 3885500 1756100 2129400 4254000 2326800 1927200 1585500 697100 888410 0 0 0 0 0 0 3766 2959 3917 19626;19627;19628;19629;19630;19631;19632 20319;20320;20321;20322 20320 4 AYKEELEGQLGPMAQETQAR QELTALMEETMKEVKAYKEELEGQLGPMAQ LEGQLGPMAQETQARVSKELQAAQARLGSD K A Y A R V 3 1 0 0 0 3 4 2 0 0 2 1 1 0 1 0 1 0 1 0 0 0 20 1 2248.0794 CON__Q03247 CON__Q03247 90 109 yes yes 3 1.9318E-21 107.72 By MS/MS By MS/MS By MS/MS 2 1 3 0.13265 0.1467 129.16 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45222 0.49012 175.11 2 2 Median 0.071905 0.067857 NaN 1 1 Median 0.13447 0.15146 111.67 3 3 Median NaN NaN NaN 0 0 Median 70448000 41652000 28797000 0 0 0 0 0 0 38019000 18374000 19645000 2456500 2144600 311880 29973000 21133000 8839700 0 0 0 + 3767 767 3918;3919 19633;19634;19635;19636;19637;19638 20323;20324;20325;20326;20327;20328;20329;20330 20326 288 8 AYLDSTER NPEDKLQIYRDNFEKAYLDSTERFYRTQAP YRDNFEKAYLDSTERFYRTQAPSYLQQNGV K A Y E R F 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 8 0 953.44543 Q93034;H0YCA0 Q93034 205 212 CUL5 Cullin-5 yes no 2 0.028767 60.76 By MS/MS 1 0.2019 0.2203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2019 0.2203 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1928300 1615500 312770 0 0 0 0 0 0 1928300 1615500 312770 0 0 0 0 0 0 0 0 0 3768 3575 3920 19639 20331 20331 1 AYLESFYK LDEMNIEIIRNTLYKAYLESFYKFCTLLGG IRNTLYKAYLESFYKFCTLLGGTTADAMCP K A Y Y K F 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 2 0 0 0 8 0 1019.4964 F5GYQ1;P61421;J3QL14;R4GN72;H3BQJ1 F5GYQ1 229 236 ATP6V0D1 V-type proton ATPase subunit d 1 yes no 2 0.023052 44.447 By matching By matching By MS/MS By matching 1 1 1 1 1.316 1.2049 15.55 4 Median 1.1093 1.0869 NaN 1 0 Median 1.4137 1.1951 NaN 1 0 Median 1.6207 1.5638 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2251 1.2148 NaN 1 0 Median NaN NaN NaN 0 0 Median 5439000 2384900 3054100 1661200 746760 914410 1468500 597070 871440 1729500 743250 986240 0 0 0 579850 297820 282030 0 0 0 3769 1012 3921 19640;19641;19642;19643 20332 20332 1 AYLFAHAVDFVPSEENNLVGTLK LANQKQQHLAFRDRRAYLFAHAVDFVPSEE DFVPSEENNLVGTLKISGYVRGQTLNVNRL R A Y L K I 3 0 2 1 0 0 2 1 1 0 3 1 0 2 1 1 1 0 1 3 0 0 23 0 2533.2853 Q2NL82;I3L1Q5 Q2NL82 251 273 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 3 0.006975 21.616 By MS/MS 1 1.0539 0.92076 NaN 1 Median NaN NaN NaN 0 0 Median 1.0539 0.92076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8066400 3884800 4181600 0 0 0 8066400 3884800 4181600 0 0 0 0 0 0 0 0 0 0 0 0 3770 3004 3922 19644 20333 20333 1 AYLLQNFNEEGTTEKPSK PATLQLIDTYASFTRAYLLQNFNEEGTTEK LQNFNEEGTTEKPSKEKLQGFAAVLAIGSS R A Y S K E 1 0 2 0 0 1 3 1 0 0 2 2 0 1 1 1 2 0 1 0 0 0 18 1 2068.0113 Q5T4S7 Q5T4S7 1175 1192 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 2.4174E-08 92.264 By MS/MS By MS/MS By matching 2 1 1 1.131 1.1547 25.494 4 Median 1.1574 1.2024 24.665 2 0 Median 0.85804 0.8202 NaN 1 0 Median 1.3791 1.3202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44835000 23333000 21502000 24704000 13228000 11476000 17605000 9000700 8604800 2525700 1104300 1421400 0 0 0 0 0 0 0 0 0 3771 3089 3923 19645;19646;19647;19648 20334;20335 20334 2 AYLNQTVTEFK VDLKAESVAAPITVRAYLNQTVTEFKQLIS ITVRAYLNQTVTEFKQLISKAIHLPAETMR R A Y F K Q 1 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 2 0 1 1 0 0 11 0 1312.6663 Q96K76 Q96K76 736 746 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 0.022328 34.253 By MS/MS 1 1.0884 0.96409 NaN 1 Median NaN NaN NaN 0 0 Median 1.0884 0.96409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2367500 1040400 1327100 0 0 0 2367500 1040400 1327100 0 0 0 0 0 0 0 0 0 0 0 0 3772 3690 3924 19649 20336;20337 20337 2 AYLPQELLGK VSALSQTGSLFKPRKAYLPQELLGKEGFDA FKPRKAYLPQELLGKEGFDALDPFIPILVS K A Y G K E 1 0 0 0 0 1 1 1 0 0 3 1 0 0 1 0 0 0 1 0 0 0 10 0 1130.6336 P51398;V9GZ03;V9GYA7;V9GZ61;V9GYC9 P51398 322 331 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 0.022594 36.395 By MS/MS By matching By matching By matching 1 1 1 1 1.0303 0.99232 28.501 4 Median 0.63317 0.59476 NaN 1 0 Median 1.1986 1.0584 NaN 1 0 Median 0.99636 1.112 NaN 1 0 Median 1.0655 0.93038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4961700 2630400 2331300 2891300 1631600 1259700 616520 287340 329180 1390500 682580 707900 63385 28891 34494 0 0 0 0 0 0 3773 2431 3925 19650;19651;19652;19653 20338 20338 1 AYLPVNESFGFTADLR FEESQVAGTPMFVVKAYLPVNESFGFTADL YLPVNESFGFTADLRSNTGGQAFPQCVFDH K A Y L R S 2 1 1 1 0 0 1 1 0 0 2 0 0 2 1 1 1 0 1 1 0 0 16 0 1798.889 P13639 P13639 786 801 EEF2 Elongation factor 2 yes yes 2 1.6708E-08 125.54 By MS/MS By MS/MS 3 3 0.90823 0.85068 28.882 6 Median 0.94452 0.95672 41.87 3 0 Median 0.87333 0.75639 17.235 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46426000 25408000 21018000 9927900 5724400 4203500 36499000 19684000 16815000 0 0 0 0 0 0 0 0 0 0 0 0 3774 1992 3926 19654;19655;19656;19657;19658;19659 20339;20340;20341;20342;20343;20344;20345;20346 20343 8 AYLQEEERENSEVSPR LISLRPQELVDVIKKAYLQEEERENSEVSP YLQEEERENSEVSPREVGHNIYILALQLSR K A Y P R E 1 2 1 0 0 1 5 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 16 1 1934.897 Q14573 Q14573 2032 2047 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 3 6.672E-09 100.41 By MS/MS By MS/MS 1 1 0.96568 1.0508 0.11588 2 Median NaN NaN NaN 0 0 Median 1.1202 1.0499 NaN 1 1 Median 0.83248 1.0516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13834000 6661900 7172200 0 0 0 10554000 4843100 5711100 3279800 1818700 1461000 0 0 0 0 0 0 0 0 0 3775 2883 3927 19660;19661 20347;20348 20348 2 AYLQQLR IYAKPANKQEDEVMRAYLQQLRQETGLRLC KQEDEVMRAYLQQLRQETGLRLCEKVFDPQ R A Y L R Q 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 890.4974 O15145 O15145 131 137 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 2 4.101E-05 126.05 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.3352 1.1749 18.837 5 Median 1.3352 1.2886 NaN 1 1 Median 1.5492 1.2831 NaN 1 0 Median 1.1997 1.152 NaN 1 0 Median 1.4165 1.1749 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.91507 0.81516 NaN 1 0 Median 76123000 32692000 43430000 16056000 6329400 9727000 26525000 11007000 15518000 29396000 13690000 15706000 3872900 1545000 2327900 0 0 0 271920 120150 151770 3776 1527 3928 19662;19663;19664;19665;19666 20349;20350;20351;20352 20349 4 AYLVPENFR TTTTTKAPRLLPAPRAYLVPENFRERNLQL LLPAPRAYLVPENFRERNLQLIQSIRDFLQ R A Y F R E 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 9 0 1107.5713 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 746 754 ZNF598 Zinc finger protein 598 yes no 2 0.006443 54.549 By matching By MS/MS 1 3 0.8801 0.73934 54.515 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0483 1.1213 NaN 1 0 Median 0.73889 0.62923 51.307 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10877000 6278600 4598600 0 0 0 0 0 0 4309900 2206200 2103600 6567400 4072400 2495000 0 0 0 0 0 0 3777 3278 3929 19667;19668;19669;19670 20353;20354 20353 2 AYNADFDGDEMNAHFPQSELGR LPEEKVLRLHYANCKAYNADFDGDEMNAHF GDEMNAHFPQSELGRAEAYVLACTDQQYLV K A Y G R A 3 1 2 3 0 1 2 2 1 0 1 0 1 2 1 1 0 0 1 0 0 0 22 0 2483.0448 O95602;B9ZVN9 O95602 584 605 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 3.2327E-12 63.454 By matching By matching By MS/MS 1 1 1 0.96492 0.96967 17.458 3 Median 0.96492 0.96967 NaN 1 0 Median 1.2934 1.1508 NaN 1 0 Median 0.7422 0.81163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10838000 5780600 5057500 1355600 682880 672770 186250 96907 89348 9296200 5000800 4295400 0 0 0 0 0 0 0 0 0 3778 1781 3930 19671;19672;19673 20355;20356;20357 20355 3 AYNEAEVLYNR PECMALKADVVAKKRAYNEAEVLYNRSLNE AKKRAYNEAEVLYNRSLNEYKALKKDDEQL R A Y N R S 2 1 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 11 0 1340.6361 Q96SB8;C9JMN1;A0A0A0MRY1 Q96SB8 359 369 SMC6 Structural maintenance of chromosomes protein 6 yes no 2 0.033047 47.603 By MS/MS 1 1.6457 1.729 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6457 1.729 NaN 1 1 Median NaN NaN NaN 0 0 Median 3426500 1509100 1917400 0 0 0 0 0 0 0 0 0 0 0 0 3426500 1509100 1917400 0 0 0 3779 3733 3931 19674 20358 20358 1 AYNHHIQELQR VTIDHFKEAICSSLKAYNHHIQELQREMEE SSLKAYNHHIQELQREMEEATASAQRIRRD K A Y Q R E 1 1 1 0 0 2 1 0 2 1 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1407.7007 Q9P253 Q9P253 811 821 VPS18 Vacuolar protein sorting-associated protein 18 homolog yes yes 3 0.0003879 79.659 By MS/MS 1 1.7889 1.5318 NaN 1 Median NaN NaN NaN 0 0 Median 1.7889 1.5318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131900 867540 1264300 0 0 0 2131900 867540 1264300 0 0 0 0 0 0 0 0 0 0 0 0 3780 4213 3932 19675 20359 20359 1 AYNYVAQEVDDYHAFQTLTHIYNK EDVDGMQDAGVAVLRAYNYVAQEVDDYHAF DDYHAFQTLTHIYNKVRTGEKVKVEHVVSV R A Y N K V 3 0 2 2 0 2 1 0 2 1 1 1 0 1 0 0 2 0 4 2 0 0 24 0 2902.3562 Q9NYU2 Q9NYU2 554 577 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 3;4 0.021985 13.682 By MS/MS By matching By matching 3 2 1 1.0531 1.039 26.6 6 Median 1.0132 0.97399 12.347 3 0 Median 1.7574 1.5431 4.5857 2 0 Median 0.81742 0.87586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14031000 6457400 7573600 10710000 4992600 5717000 2808900 1214000 1594900 512440 250780 261660 0 0 0 0 0 0 0 0 0 3781 4179 3933 19676;19677;19678;19679;19680;19681 20360;20361;20362 20360 3 AYPAAITILETAQK DARGMTPFMSAVSGRAYPAAITILETAQKI RAYPAAITILETAQKIAKAEISSSEKEEDV R A Y Q K I 4 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 2 0 1 0 0 0 14 0 1488.8188 O95071;E7EMW7 O95071 1125 1138 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0573 23.605 By MS/MS 1 0.84221 0.83555 NaN 1 Median 0.84221 0.83555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2912700 1531300 1381500 2912700 1531300 1381500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3782 1744 3934 19682 20363 20363 1 AYPDNHLSQVDVNELFSK QNPGFVQNPSGALPKAYPDNHLSQVDVNEL DNHLSQVDVNELFSKLLKTGILKLSQTDSA K A Y S K L 1 0 2 2 0 1 1 0 1 0 2 1 0 1 1 2 0 0 1 2 0 0 18 0 2074.996 O94913;E9PNY7 O94913 1258 1275 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 3 0.00059258 33.836 By MS/MS By matching 1 1 0.6499 0.65259 6.937 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61525 0.6854 NaN 1 0 Median 0.68649 0.62135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4743600 2901000 1842500 0 0 0 0 0 0 4631400 2844800 1786600 112180 56267 55914 0 0 0 0 0 0 3783 1736 3935 19683;19684 20364 20364 1 AYPDVAALSDGYWVVSNR SPHLPPSSYFNASGRAYPDVAALSDGYWVV DVAALSDGYWVVSNRVPIPWVSGTSASTPV R A Y N R V 3 1 1 2 0 0 0 1 0 0 1 0 0 0 1 2 0 1 2 3 0 0 18 0 1981.9534 A0A2R8YGD1;O14773;A0A2R8Y7U1;A0A2R8YD45 A0A2R8YGD1 355 372 TPP1 Tripeptidyl-peptidase 1 yes no 2;3 0.0015036 35.737 By MS/MS By matching By MS/MS By matching 2 2 2 1 0.69585 0.69861 27.704 7 Median 0.53278 0.52651 12.057 2 0 Median 0.7269 0.75017 20.098 2 0 Median 0.77458 0.7649 12.822 2 0 Median NaN NaN NaN 0 0 Median 1.0963 1.1038 NaN 1 0 Median NaN NaN NaN 0 0 Median 6963900 4117000 2847000 3791000 2430000 1360900 607310 356880 250440 2236400 1165600 1070700 0 0 0 329240 164410 164830 0 0 0 3784 402 3936 19685;19686;19687;19688;19689;19690;19691 20365;20366;20367;20368 20367 4 AYPHVFTK MRHVISYSLSPFEQRAYPHVFTKGIPNVLR LSPFEQRAYPHVFTKGIPNVLRRIRESFFR R A Y T K G 1 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 1 0 0 8 0 961.50215 O14949 O14949 26 33 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 0.0072183 67.981 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1.3347 1.1529 15.654 7 Median 1.0677 0.96439 NaN 1 0 Median 1.3881 1.1472 4.5084 2 0 Median 1.1612 1.1529 NaN 1 0 Median 1.5828 1.2998 NaN 1 0 Median 1.4203 1.5012 NaN 1 0 Median 1.1944 0.97216 NaN 1 0 Median 90315000 40450000 49864000 36750000 18168000 18581000 49070000 20352000 28718000 2221000 906170 1314800 606650 206060 400590 862880 386100 476780 804300 431160 373140 3785 1505 3937 19692;19693;19694;19695;19696;19697;19698 20369;20370;20371;20372;20373;20374;20375 20371 7 AYPLADAHLTK ______________________________ VNPKAYPLADAHLTKKLLDLVQQSCNYKQL K A Y T K K 3 0 0 1 0 0 0 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1198.6346 P55769 P55769 10 20 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2;3 8.108E-05 93.098 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 4 2 1.1683 1.0615 21.942 15 Median 1.6275 1.4803 47.034 2 1 Median 1.4227 1.1695 3.9699 2 1 Median 1.2262 1.1595 9.6206 3 2 Plateau 1.1236 0.90986 9.3835 2 0 Median 0.95519 1.0096 5.442 4 0 Median 1.656 1.3366 21.345 2 0 Median 244490000 103560000 140930000 24659000 8154700 16505000 45382000 16326000 29056000 135330000 59912000 75420000 5775400 2558200 3217200 32627000 16360000 16267000 714140 248180 465960 3786 2501 3938 19699;19700;19701;19702;19703;19704;19705;19706;19707;19708;19709;19710;19711;19712;19713 20376;20377;20378;20379;20380;20381;20382;20383;20384;20385;20386;20387;20388;20389;20390;20391;20392;20393;20394;20395;20396;20397;20398;20399;20400;20401;20402;20403;20404 20396 29 AYPLADAHLTKK ______________________________ NPKAYPLADAHLTKKLLDLVQQSCNYKQLR K A Y K K L 3 0 0 1 0 0 0 0 1 0 2 2 0 0 1 0 1 0 1 0 0 0 12 1 1326.7296 P55769 P55769 10 21 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2;3 5.5036E-05 85.355 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 4 2 0.97358 0.93466 17.081 14 Median 0.87566 0.82002 12.154 2 0 Median 1.2101 1.0491 14.404 3 0 Median 0.91694 0.92414 0.15907 2 0 Median 1.1864 0.9951 NaN 1 0 Median 0.97333 0.81921 23.051 4 0 Median 1.2264 1.1367 6.6204 2 0 Median 124190000 62629000 61565000 14230000 7579300 6650900 37763000 18044000 19719000 42296000 21799000 20497000 1385200 626710 758480 27389000 14110000 13278000 1130500 469940 660600 3787 2501 3939 19714;19715;19716;19717;19718;19719;19720;19721;19722;19723;19724;19725;19726;19727 20405;20406;20407;20408;20409;20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427;20428;20429;20430;20431;20432;20433;20434;20435 20428 31 AYPNNYETMK GDKENASQCFEKVLKAYPNNYETMKILGSL EKVLKAYPNNYETMKILGSLYAASEDQEKR K A Y M K I 1 0 2 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 2 0 0 0 10 0 1229.5387 Q6PD62 Q6PD62 370 379 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.026168 49.418 By MS/MS 1 0.88857 0.96014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88857 0.96014 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2542800 1341200 1201700 0 0 0 0 0 0 2542800 1341200 1201700 0 0 0 0 0 0 0 0 0 3788 3168 3940 19728 20436 20436 1 AYPVSGSPEYLTEDLPDSIQVGGR KGFINMPSVAKFVTKAYPVSGSPEYLTEDL YLTEDLPDSIQVGGRISPQTVWDYVEKIKA K A Y G R I 1 1 0 2 0 1 2 3 0 1 2 0 0 0 3 3 1 0 2 2 0 0 24 0 2549.2286 Q92576;E7ER40;E7EVH3;H0Y8L0 Q92576 1225 1248 PHF3 PHD finger protein 3 yes no 2;3 0.00011863 34.954 By matching By matching By MS/MS 1 1 2 0.63603 0.74062 61.066 4 Median 0.84638 1.0321 NaN 1 0 Median 1.3222 1.1534 NaN 1 0 Median 0.36657 0.40729 37.629 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5880400 3877600 2002700 975540 589090 386450 729380 365710 363680 4175400 2922800 1252600 0 0 0 0 0 0 0 0 0 3789 3539 3941 19729;19730;19731;19732 20437;20438 20438 2 AYQHGGVTGLSQY IDVALSQDSTYQGERAYQHGGVTGLSQY__ ERAYQHGGVTGLSQY_______________ R A Y Q Y - 1 0 0 0 0 2 0 3 1 0 1 0 0 0 0 1 1 0 2 1 0 0 13 0 1379.647 Q92900 Q92900 1117 1129 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00027496 90.15 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8644700 0 0 0 0 0 8644700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3790 3564 3942 19733;19734 20439;20440 20440 2 AYQIDPTLR VRMRANPLAYGISHKAYQIDPTLRKHREQL YGISHKAYQIDPTLRKHREQLVIEVGRKLD K A Y L R K 1 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 9 0 1075.5662 Q8N3C0 Q8N3C0 939 947 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0035603 64.265 By MS/MS 1 1.2133 1.0278 NaN 1 Median NaN NaN NaN 0 0 Median 1.2133 1.0278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4078200 1533100 2545100 0 0 0 4078200 1533100 2545100 0 0 0 0 0 0 0 0 0 0 0 0 3791 3366 3943 19735 20441 20441 1 AYQKQPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR R A Y N K K 1 0 1 0 0 3 0 0 0 1 0 2 0 1 1 0 1 0 1 0 0 0 12 1 1464.7725 M0QZC5;P62280;M0R1H6 M0QZC5 9 20 RPS11 40S ribosomal protein S11 yes no 3 0.00041984 54.486 By matching By MS/MS 1 1 0.93156 0.89812 22.406 2 Median 0.72921 0.76653 NaN 1 0 Median 1.1901 1.0523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4876900 2102500 2774300 1565500 573260 992210 3311400 1529300 1782100 0 0 0 0 0 0 0 0 0 0 0 0 3792 1422 3944 19736;19737 20442 20442 1 AYQQLSGLWYHNR THVGGKPFSCGICNKAYQQLSGLWYHNRTH NKAYQQLSGLWYHNRTHHPDVFAAQNHRSS K A Y N R T 1 1 1 0 0 2 0 1 1 0 2 0 0 0 0 1 0 1 2 0 0 0 13 0 1634.7954 F8WAI8;Q9NUA8 F8WAI8 902 914 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 3 0.06055 21.06 By MS/MS 1 0.91077 0.99975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91077 0.99975 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943100 1497700 1445300 0 0 0 0 0 0 2943100 1497700 1445300 0 0 0 0 0 0 0 0 0 3793 1091 3945 19738 20443 20443 1 AYQSTFTGETNTPYSK HYKRPHTLNSTSMSKAYQSTFTGETNTPYS YQSTFTGETNTPYSKQFVHSKSSQYRRLRT K A Y S K Q 1 0 1 0 0 1 1 1 0 0 0 1 0 1 1 2 4 0 2 0 0 0 16 0 1793.8108 O14686;H0YEF2 O14686 5363 5378 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 4.8589E-10 106.01 By MS/MS 2 0.72399 0.766 3.0557 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72399 0.766 3.0557 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21573000 11632000 9941400 0 0 0 0 0 0 21573000 11632000 9941400 0 0 0 0 0 0 0 0 0 3794 1490 3946 19739;19740 20444 20444 1 AYSDPSTGEPATYGELQQR EETSRALSAPRADAKAYSDPSTGEPATYGE PSTGEPATYGELQQRCRPDQLTGLSLLPLS K A Y Q R C 2 1 0 1 0 2 2 2 0 0 1 0 0 0 2 2 2 0 2 0 0 0 19 0 2068.9338 Q15149;H0YDN1 Q15149 3317 3335 PLEC Plectin yes no 2;3 8.4588E-25 175.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 2 0.89833 0.869 16.772 13 Median 0.82831 0.81001 10.686 2 0 Median 1.132 0.94175 24.456 2 0 Median 0.83187 0.88916 3.1007 2 0 Median 1.225 1.0654 28.817 2 0 Median 0.8048 0.84539 10.962 3 2 Median 0.91492 0.76009 2.1086 2 0 Median 66321000 34742000 31579000 30891000 16409000 14482000 10742000 5232900 5508800 13202000 7071000 6131000 2601300 1251400 1349900 7585700 4127300 3458400 1298500 650320 648220 3795 2933 3947 19741;19742;19743;19744;19745;19746;19747;19748;19749;19750;19751;19752;19753 20445;20446;20447;20448;20449;20450;20451;20452;20453;20454;20455;20456;20457;20458;20459;20460;20461 20456 17 AYSDQAIVNLLK KALLDNTKDKNTVVRAYSDQAIVNLLKMRQ VVRAYSDQAIVNLLKMRQGEEVFQSLSKIL R A Y L K M 2 0 1 1 0 1 0 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1333.7242 Q92616 Q92616 2610 2621 GCN1L1 Translational activator GCN1 yes yes 2 0.0011531 56.432 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1 1.119 1.0337 31.042 11 Median 1.0741 1.0395 5.8044 3 0 Plateau 1.1768 1.0314 39.936 4 0 Median 1.0353 1.129 13.674 2 0 Median NaN NaN NaN 0 0 Median 1.6866 1.7876 NaN 1 0 Median 1.3778 1.1982 NaN 1 0 Median 35863000 16821000 19042000 11276000 5140500 6135300 19669000 9484400 10185000 2804000 1343600 1460300 0 0 0 1989900 800210 1189700 124710 52657 72054 3796 3544 3948 19754;19755;19756;19757;19758;19759;19760;19761;19762;19763;19764 20462;20463;20464;20465;20466 20463 5 AYSEAHEISK ATGEKRATVVESSEKAYSEAHEISKEHMQP ESSEKAYSEAHEISKEHMQPTHPIRLGLAL K A Y S K E 2 0 0 0 0 0 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 10 0 1133.5353 P61981 P61981 153 162 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 0.037233 31.934 By MS/MS By matching By matching By matching 1 1 2 1 0.99493 0.99616 19.595 5 Median NaN NaN NaN 0 0 Median 0.99493 0.85044 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0978 0.8951 NaN 1 0 Median 0.95717 1.0204 3.4011 2 0 Median 1.7249 1.4045 NaN 1 0 Median 4653200 2330400 2322800 0 0 0 674240 323760 350480 0 0 0 243950 119790 124170 3583600 1828200 1755300 151420 58605 92811 3797 2566 3949 19765;19766;19767;19768;19769 20467 20467 1 AYSEAHEISKEHMQPTHPIR ATGEKRATVVESSEKAYSEAHEISKEHMQP HEISKEHMQPTHPIRLGLALNYSVFYYEIQ K A Y I R L 2 1 0 0 0 1 3 0 3 2 0 1 1 0 2 2 1 0 1 0 0 0 20 1 2360.1332 P61981 P61981 153 172 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 3;4;5 4.2777E-08 61.477 By MS/MS By MS/MS 3 3 0.91007 0.8407 22.079 6 Median 0.71022 0.74551 34.445 3 0 Median 0.92107 0.85164 4.6462 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40729000 20946000 19783000 15067000 8129400 6937300 25662000 12816000 12846000 0 0 0 0 0 0 0 0 0 0 0 0 3798 2566 3950 19770;19771;19772;19773;19774;19775 20468;20469;20470;20471;20472;20473;20474;20475 20475 8 AYSNLGSAYHYR LKIAKDLGNKREEARAYSNLGSAYHYRRNF EARAYSNLGSAYHYRRNFDKAMSYHNYVLE R A Y Y R R 2 1 1 0 0 0 0 1 1 0 1 0 0 0 0 2 0 0 3 0 0 0 12 0 1400.6473 A0A087WW06;Q96AY4 A0A087WW06 269 280 TTC28 Tetratricopeptide repeat protein 28 yes no 3 0.052271 30.331 By MS/MS 1 0.94616 0.94081 NaN 1 Median 0.94616 0.94081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2446000 1161600 1284300 2446000 1161600 1284300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3799 49 3951 19776 20476 20476 0 AYSNWPTYPQLYVK TFDILEDEEVRQGLKAYSNWPTYPQLYVKG KAYSNWPTYPQLYVKGELVGGLDIVKELKE K A Y V K G 1 0 1 0 0 1 0 0 0 0 1 1 0 0 2 1 1 1 3 1 0 0 14 0 1728.8512 O76003 O76003 295 308 GLRX3 Glutaredoxin-3 yes yes 2 0.00035844 72.434 By MS/MS By MS/MS By matching 1 1 1 0.86857 0.78875 11.632 3 Median 0.86857 0.80281 NaN 1 0 Median 0.75517 0.65093 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92692 0.78875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18893000 10234000 8659200 15822000 8468900 7353000 2829800 1668800 1161000 0 0 0 241460 96263 145190 0 0 0 0 0 0 3800 1715 3952 19777;19778;19779 20477;20478;20479;20480 20478 4 AYSSFGGGR ______________________________ DTYDDRAYSSFGGGRGSRGSAGGHGSRSQK R A Y G R G 1 1 0 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 1 0 0 0 9 0 900.40898 Q15056 Q15056 11 19 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.00085343 94.262 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1612 1.0493 8.9192 4 Median 1.0646 1.0046 NaN 1 0 Median 1.261 1.072 NaN 1 0 Median 1.0692 1.027 NaN 1 0 Median 1.4843 1.2259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14267000 6473100 7793500 4517000 1925800 2591200 1448300 650970 797290 7271200 3459100 3812100 1030200 437240 592950 0 0 0 0 0 0 3801 2922 3953 19780;19781;19782;19783 20481;20482;20483;20484 20481 4 AYTDELVELHR CSKPEKILKKGTYDKAYTDELVELHRRLMA TYDKAYTDELVELHRRLMALRERNVLQQIV K A Y H R R 1 1 0 1 0 0 2 0 1 0 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1344.6674 Q03111 Q03111 494 504 MLLT1 Protein ENL yes yes 2;3 4.2953E-05 81.865 By MS/MS By matching 2 1 0.96531 0.98934 13.235 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95285 0.98934 11.343 2 0 Median 0.96531 0.82443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12266000 6540300 5725700 0 0 0 0 0 0 11966000 6321500 5644600 299920 218870 81054 0 0 0 0 0 0 3802 2706 3954 19784;19785;19786 20485;20486;20487;20488 20486 4 AYTGFSSNSER STRETPSQENGPTAKAYTGFSSNSERGTEA PTAKAYTGFSSNSERGTEAGQVGEPGIPTG K A Y E R G 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 3 1 0 1 0 0 0 11 0 1217.5313 O15355 O15355 210 220 PPM1G Protein phosphatase 1G yes yes 2 0.00020098 103.7 By MS/MS By MS/MS 1 2 1.1061 1.0561 9.8671 3 Median 1.1061 1.0738 NaN 1 0 Median 1.1144 0.97395 11.454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13176000 6155000 7020700 5269600 2502500 2767100 7906100 3652500 4253700 0 0 0 0 0 0 0 0 0 0 0 0 3803 1538 3955 19787;19788;19789 20489;20490;20491 20491 3 AYTIDPSNPMVLNHLANHFFFK KEADSIKNGVQLLSRAYTIDPSNPMVLNHL NPMVLNHLANHFFFKKDYSKVQHLALHAFH R A Y F K K 2 0 3 1 0 0 0 0 2 1 2 1 1 3 2 1 1 0 1 1 0 0 22 0 2575.2682 Q6PD62 Q6PD62 261 282 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 3 0.0050985 23.447 By MS/MS 1 0.67079 0.72117 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67079 0.72117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1798100 1076200 721920 0 0 0 0 0 0 1798100 1076200 721920 0 0 0 0 0 0 0 0 0 3804 3168 3956 19790 20492 20492 1 AYTNFDAER EGDHSTPPSAYGSVKAYTNFDAERDALNIE AYGSVKAYTNFDAERDALNIETAIKTKGVD K A Y E R D 2 1 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 1085.4778 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 29 37 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 5.5839E-23 194.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 4 1 2 1.1624 0.99353 45.63 15 Median 1.182 1.1413 6.9483 3 0 Plateau 1.0187 0.88797 21.234 4 0 Median 1.1511 1.1136 NaN 1 0 Median 1.1899 0.97706 25.968 4 0 Median 1.0399 1.0528 NaN 1 0 Median 0.55728 0.44243 114.41 2 0 Median 421850000 186880000 234980000 60333000 27535000 32798000 131720000 58824000 72897000 96604000 42575000 54029000 113180000 48633000 64545000 11522000 5549100 5973100 8497300 3760300 4736900 3805 1885 3957 19791;19792;19793;19794;19795;19796;19797;19798;19799;19800;19801;19802;19803;19804;19805 20493;20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506;20507;20508;20509;20510 20508 18 AYTNFDAERDALNIETAIK EGDHSTPPSAYGSVKAYTNFDAERDALNIE FDAERDALNIETAIKTKGVDEVTIVNILTN K A Y I K T 4 1 2 2 0 0 2 0 0 2 1 1 0 1 0 0 2 0 1 0 0 0 19 1 2154.0593 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 29 47 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3 7.7695E-06 49.425 By MS/MS By matching By MS/MS By matching By MS/MS 3 2 2 1 1 1.1737 1.1664 21.724 9 Median 1.1737 1.1664 9.0159 3 0 Median 1.2622 1.1672 1.4482 2 0 Median 1.1894 1.292 1.8117 2 0 Median 0.76468 0.67313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96991 0.86886 NaN 1 0 Median 89466000 38016000 51450000 48112000 21076000 27037000 3649600 1515900 2133800 34089000 14601000 19488000 404850 228440 176400 0 0 0 3210700 595640 2615100 3806 1885 3958 19806;19807;19808;19809;19810;19811;19812;19813;19814 20511;20512;20513;20514;20515;20516;20517 20515 7 AYTPPEDLQSR EKKEPILVCPPLRSRAYTPPEDLQSRLESY LRSRAYTPPEDLQSRLESYVKEVFGSSLPS R A Y S R L 1 1 0 1 0 1 1 0 0 0 1 0 0 0 2 1 1 0 1 0 0 0 11 0 1275.6095 Q8N5N7 Q8N5N7 59 69 MRPL50 39S ribosomal protein L50, mitochondrial yes yes 2 0.0058304 65.305 By MS/MS By MS/MS By MS/MS 1 1 1 1.0261 0.8723 12.478 3 Median NaN NaN NaN 0 0 Median 1.0261 0.8723 NaN 1 1 Median 0.81151 0.82241 NaN 1 0 Median 1.3244 1.0449 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15447000 7520300 7926300 0 0 0 10619000 5371500 5247800 3818300 1931300 1886900 1009000 217410 791600 0 0 0 0 0 0 3807 3384 3959 19815;19816;19817 20518;20519;20520 20518 3 AYVAVDGIPQGVLER NPAPLSSPLNGVHDRAYVAVDGIPQGVLER AYVAVDGIPQGVLERNNVITLNITGKAGAT R A Y E R N 2 1 0 1 0 1 1 2 0 1 1 0 0 0 1 0 0 0 1 3 0 0 15 0 1585.8464 E7EQ29;P16278 E7EQ29 312 326 GLB1 Beta-galactosidase yes no 2 4.5547E-06 87.298 By MS/MS 1 0.85834 0.81891 NaN 1 Median 0.85834 0.81891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9780200 5417600 4362600 9780200 5417600 4362600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3808 874 3960 19818 20521 20521 1 AYVDDTPAEQMK ETIMKYAEKLIQEGKAYVDDTPAEQMKAER EGKAYVDDTPAEQMKAEREQRIDSKHRKNP K A Y M K A 2 0 0 2 0 1 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 12 0 1366.6075 P07814;V9GYZ6 P07814 289 300 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 3.0793E-06 134.25 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.0518 0.96386 46.468 7 Median 0.98046 0.95817 7.433 2 0 Median 1.0878 0.96386 20.391 3 0 Median 2.4685 2.6645 NaN 1 0 Median 0.65689 0.59464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49620000 22909000 26712000 29785000 14205000 15580000 15447000 6821000 8625800 2308300 780350 1528000 2080300 1101800 978450 0 0 0 0 0 0 3809 1892 3961 19819;19820;19821;19822;19823;19824;19825 20522;20523;20524;20525;20526;20527;20528 20522 7 AYVDDTPAEQMKAER ETIMKYAEKLIQEGKAYVDDTPAEQMKAER AYVDDTPAEQMKAEREQRIDSKHRKNPIEK K A Y E R E 3 1 0 2 0 1 2 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 15 1 1722.7883 P07814;V9GYZ6 P07814 289 303 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.00027663 45.33 By MS/MS 1 1.0816 1.0897 NaN 1 Median 1.0816 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6940200 3245600 3694600 6940200 3245600 3694600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3810 1892 3962 19826 20529;20530 20529 2 AYVEANQMLGDLIK AHSMGLGSKFKEVKKAYVEANQMLGDLIKV KAYVEANQMLGDLIKVTPSSKIVGDLAQFM K A Y I K V 2 0 1 1 0 1 1 1 0 1 2 1 1 0 0 0 0 0 1 1 0 0 14 0 1563.7967 P11498 P11498 893 906 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.010512 33.866 By MS/MS By matching 1 1 1.0641 0.9738 13.306 2 Median 1.0931 1.0699 NaN 1 0 Median 1.0359 0.88636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5588800 2683400 2905400 4446500 2233300 2213200 1142300 450100 692210 0 0 0 0 0 0 0 0 0 0 0 0 3811 1967 3963 19827;19828 20531 20531 1 AYVFERDQSVGDPK QFGDNGTTISAVSNKAYVFERDQSVGDPKI KAYVFERDQSVGDPKIDLIRTLNIPVLTVI K A Y P K I 1 1 0 2 0 1 1 1 0 0 0 1 0 1 1 1 0 0 1 2 0 0 14 1 1609.7736 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PSE4;A0A1W2PS70;A0A1W2PNX7 A0A1W2PPU6 116 129 SCARB2 Lysosome membrane protein 2 yes no 3 0.047273 15.162 By MS/MS 1 0.93404 0.95902 NaN 1 Median 0.93404 0.95902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9429700 4644500 4785200 9429700 4644500 4785200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3812 340 3964 19829 20532 20532 1 AYVHEFK AHLVGDQDQFDSFLKAYVHEFKFRSILADD DQFDSFLKAYVHEFKFRSILADDFLDFYLE K A Y F K F 1 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 7 0 892.4443 Q9H4A4;A6NKB8;C9JMZ3;H7C2T3 Q9H4A4 440 446 RNPEP Aminopeptidase B yes no 2 0.029491 65.803 By MS/MS 1 8.6256 7.1503 NaN 1 Median NaN NaN NaN 0 0 Median 8.6256 7.1503 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78091000 3051900 75039000 0 0 0 78091000 3051900 75039000 0 0 0 0 0 0 0 0 0 0 0 0 3813 3964 3965 19830 20533 20533 1 AYVPALQMAFK FLLSLPHNIIELDVRAYVPALQMAFKLGLS LDVRAYVPALQMAFKLGLSYTPLAEVGLNA R A Y F K L 3 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 11 0 1237.6529 P78527 P78527 747 757 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00015043 84.568 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 5 3 2 3 0.84394 0.88332 54.545 17 Median 0.84409 0.84616 9.1258 4 0 Median 1.2094 1.0674 NaN 1 0 Median 0.81215 0.87761 10.253 4 0 Median 1.3338 1.3147 15.767 3 0 Plateau 0.80777 0.84056 7.084 2 0 Median 1.1636 0.99722 130.51 3 0 Median 276110000 153700000 122410000 79274000 48123000 31151000 9911000 5644500 4266500 158140000 85019000 73124000 8332400 3588300 4744100 17861000 10062000 7798900 2584000 1260600 1323400 3814 2647 3966;3967 19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843;19844;19845;19846;19847;19848 20534;20535;20536;20537;20538;20539;20540;20541;20542;20543;20544;20545;20546;20547;20548;20549;20550;20551;20552;20553 20542 1313 20 AYVSLFMR WLVRDLRGKSEKEFKAYVSLFMRHLCEPGA KSEKEFKAYVSLFMRHLCEPGADGAETFAD K A Y M R H 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 8 0 985.50552 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;Q8TDI0;K7EMY3;Q12873 Q14839 1458 1465 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0040847 83.614 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 5 4 4 1.1887 1.1307 10.05 18 Median NaN NaN NaN 0 0 Median 1.1745 0.98368 NaN 1 0 Median 1.0828 1.1761 9.2741 4 0 Median 1.3358 1.1788 4.9083 5 0 Median 1.07 1.1161 13.089 4 0 Median 1.2275 1.0197 5.288 4 0 Median 58493000 27968000 30525000 0 0 0 1131900 566930 565010 38582000 18568000 20013000 3690300 1545000 2145300 13375000 6498000 6877100 1713500 789150 924370 3815 246;3471;2766 3968;3969 19849;19850;19851;19852;19853;19854;19855;19856;19857;19858;19859;19860;19861;19862;19863;19864;19865;19866 20554;20555;20556;20557;20558;20559;20560;20561;20562;20563;20564;20565;20566 20555 99 13 AYVSTLMGVPGR LTVDTSLQNGRMSIKAYVSTLMGVPGRTMG SIKAYVSTLMGVPGRTMGVMFTPLTVKYAY K A Y G R T 1 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 1 2 0 0 12 0 1249.6489 O00303 O00303 215 226 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 3.327E-06 118.26 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 1 2 1.1654 1.1269 26.117 11 Median 0.97225 0.92516 0.88475 2 1 Median 1.0768 0.91894 8.1954 2 0 Median 1.2179 1.2109 4.929 2 1 Median 1.2107 1.0488 10.164 2 0 Median 1.4143 1.4237 NaN 1 1 Median 2.1281 1.7934 7.8538 2 0 Median 84794000 39941000 44853000 45097000 22320000 22776000 5915600 2644800 3270800 17704000 8384200 9319800 10595000 4660800 5933900 3239600 1369800 1869800 2243400 561100 1682300 3816 1457 3970;3971 19867;19868;19869;19870;19871;19872;19873;19874;19875;19876;19877;19878;19879 20567;20568;20569;20570;20571;20572;20573;20574;20575;20576;20577 20569 469 11 AYYEFREEAYHSR RGVKRQRDEKDEHGRAYYEFREEAYHSRSK GRAYYEFREEAYHSRSKSPLPPEEEAKDEE R A Y S R S 2 2 0 0 0 0 3 0 1 0 0 0 0 1 0 1 0 0 3 0 0 0 13 1 1719.7641 Q1KMD3;H3BQZ7 Q1KMD3 213 225 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2;3;4 1.4544E-10 180.97 By matching By matching By MS/MS By MS/MS 2 1 5 4 1.0686 1.0312 16.133 12 Median 1.277 1.4187 2.6524 2 0 Median NaN NaN NaN 0 0 Median 0.75556 0.87304 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94906 1.0312 11.295 5 0 Median 1.1421 1.0211 5.0256 4 0 Median 223410000 110930000 112470000 4810800 2277000 2533800 0 0 0 2311200 1270500 1040700 0 0 0 179100000 90420000 88681000 37185000 16967000 20218000 3817 3002 3972 19880;19881;19882;19883;19884;19885;19886;19887;19888;19889;19890;19891 20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588;20589;20590;20591;20592;20593;20594;20595 20581 18 CAGNEDIITLR LAMGVNLTSMSKILKCAGNEDIITLRAEDN KILKCAGNEDIITLRAEDNADTLALVFEAP K C A L R A 1 1 1 1 1 0 1 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1260.6132 P12004 P12004 81 91 PCNA Proliferating cell nuclear antigen yes yes 2 0.011043 57.859 By MS/MS 1 0.99702 0.82924 NaN 1 Median NaN NaN NaN 0 0 Median 0.99702 0.82924 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7496300 3741400 3754900 0 0 0 7496300 3741400 3754900 0 0 0 0 0 0 0 0 0 0 0 0 3818 1974 3973 19892 20596 20596 1 CAGPTPEAELQALAR GNLLASDRNPPTGLRCAGPTPEAELQALAR CAGPTPEAELQALARDNTQLLINQLWQLPT R C A A R D 4 1 0 0 1 1 2 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 15 0 1582.7773 Q15050 Q15050 52 66 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.026105 39.148 By MS/MS 1 1.8788 1.8926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8788 1.8926 NaN 1 1 Median NaN NaN NaN 0 0 Median 3095800 817690 2278100 0 0 0 0 0 0 0 0 0 0 0 0 3095800 817690 2278100 0 0 0 3819 2920 3974 19893 20597 20597 1 CCSGAIIVLTK PTEATAVGAVEASFKCCSGAIIVLTKSGRS ASFKCCSGAIIVLTKSGRSAHQVARYRPRA K C C T K S 1 0 0 0 2 0 0 1 0 2 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1220.6257 P14618;B4DNK4 P14618 423 433 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 2 0.018018 54.608 By MS/MS 1 1.095 0.94199 NaN 1 Median NaN NaN NaN 0 0 Median 1.095 0.94199 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049800 1307900 1741900 0 0 0 3049800 1307900 1741900 0 0 0 0 0 0 0 0 0 0 0 0 3820 2005 3975 19894 20598 20598 1 CCTESLVNR CVLHEKTPVSEKVTKCCTESLVNRRPCFSA SEKVTKCCTESLVNRRPCFSALTPDETYVP K C C N R R 0 1 1 0 2 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1137.4907 CON__P02769;A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;A0A087WWT3;C9JKR2;D6RHD5;B7WNR0 CON__P02769 499 507 ALB Serum albumin no no 2 0.0016366 89.752 By MS/MS 1 0.073749 0.064004 NaN 1 Median NaN NaN NaN 0 0 Median 0.073749 0.064004 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3122100 3028800 93309 0 0 0 3122100 3028800 93309 0 0 0 0 0 0 0 0 0 0 0 0 + 3821 746;240 3976 19895 20599 20599 1 CDENILWLDYK GATLKITLDNAYMEKCDENILWLDYKNICK YMEKCDENILWLDYKNICKVVEVGSKIYVD K C D Y K N 0 0 1 2 1 0 1 0 0 1 2 1 0 0 0 0 0 1 1 0 0 0 11 0 1467.6704 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;P14618;B4DNK4 P14618 152 162 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00016746 94.692 By MS/MS By MS/MS By matching By matching 2 4 1 1 1.183 1.058 12.775 8 Median 1.2289 1.218 11.753 2 0 Median 1.2037 1.0402 7.8267 4 0 Median NaN NaN NaN 0 0 Median 0.95853 0.86249 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2083 1.0339 NaN 1 0 Median 12809000 5640300 7168400 1361300 538120 823140 11078000 4936900 6141500 0 0 0 188670 91269 97401 0 0 0 180270 73954 106310 3822 2005;1237 3977 19896;19897;19898;19899;19900;19901;19902;19903 20600;20601;20602;20603 20602 4 CDFTEDQTAEFK ______________________________ ______________________________ M C D F K E 1 0 0 2 1 1 2 0 0 0 0 1 0 2 0 0 2 0 0 0 0 0 12 0 1489.6031 F8W1R7;G3V1V0;P60660;G3V1Y7 F8W1R7 2 13 MYL6 Myosin light polypeptide 6 yes no 2 0.0044627 43.77 By matching By MS/MS 1 1 0.97881 0.89519 14.142 2 Median NaN NaN NaN 0 0 Median 1.1536 0.98933 NaN 1 0 Median 0.83054 0.81 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3960700 2212300 1748400 0 0 0 276170 126630 149540 3684500 2085700 1598900 0 0 0 0 0 0 0 0 0 3823 1082 3978 19904;19905 20604 20604 1 CDLVNYSYGEATHWPNSGR GTGLIRAMIEVINHKCDLVNYSYGEATHWP NYSYGEATHWPNSGRICEVINEAVWKHNII K C D G R I 1 1 2 1 1 0 1 2 1 0 1 0 0 0 1 2 1 1 2 1 0 0 19 0 2224.9596 A0A494C0U1;Q5VZU9;P29144;A0A494C0X4 A0A494C0U1 318 336 TPP2 Tripeptidyl-peptidase 2 yes no 4 0.056916 8.3901 By MS/MS By matching By matching 1 1 1 1.2252 1.0579 11.986 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84068 0.83682 NaN 1 0 Median 1.2252 1.0579 NaN 1 0 Median 0.89688 0.90092 NaN 1 0 Median NaN NaN NaN 0 0 Median 21358000 10322000 11036000 0 0 0 0 0 0 7004300 3816600 3187700 7300400 3045200 4255200 7053700 3460700 3593000 0 0 0 3824 461 3979 19906;19907;19908 20605 20605 1 CDRVDQLTAQLADLAAR ANVMMGPYRQDLLAKCDRVDQLTAQLADLA RVDQLTAQLADLAARGEGESPQARALASQL K C D A R G 4 2 0 3 1 2 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 17 1 1914.9582 P18206 P18206 545 561 VCL Vinculin yes yes 3 8.3898E-06 57.52 By MS/MS 1 1.1005 1.061 NaN 1 Median NaN NaN NaN 0 0 Median 1.1005 1.061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2432000 1177000 1255000 0 0 0 2432000 1177000 1255000 0 0 0 0 0 0 0 0 0 0 0 0 3825 2057 3980 19909 20606 20606 1 CDSSPDSAEDVR HVLKQDGQFSVLFTKCDSSPDSAEDVRKLC FTKCDSSPDSAEDVRKLCPDCPLLAPLNDS K C D V R K 1 1 0 3 1 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 0 0 12 0 1336.5201 CON__P12763;P02765 CON__P12763 132 143 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes no 2 0.0043865 64.82 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1161000 1161000 0 0 0 0 1161000 1161000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3826 755 3981 19910 20607 20607 1 CEFQDAYVLLSEK GYISPYFINTSKGQKCEFQDAYVLLSEKKI QKCEFQDAYVLLSEKKISSIQSIVPALEIA K C E E K K 1 0 0 1 1 1 2 0 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 0 1600.7443 P10809 P10809 237 249 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0036405 43.512 By MS/MS By MS/MS 2 2 1.0953 0.99611 7.531 4 Median 0.96993 0.95875 11.013 2 0 Median 1.1605 0.99727 5.7735 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7030200 3166600 3863600 2081200 1031600 1049600 4949000 2135000 2814000 0 0 0 0 0 0 0 0 0 0 0 0 3827 1947 3982 19911;19912;19913;19914 20608;20609;20610 20610 3 CEGINISGNFYR VAKQVLLGRKVVVVRCEGINISGNFYRNKL VVRCEGINISGNFYRNKLKYLAFLRKRMNT R C E Y R N 0 1 2 0 1 0 1 2 0 2 0 0 0 1 0 1 0 0 1 0 0 0 12 0 1428.6456 P40429;M0QYS1 P40429 38 49 RPL13A 60S ribosomal protein L13a yes no 2 0.00063919 62.823 By MS/MS By MS/MS 1 1 1.3402 1.2005 27.127 2 Median 1.5411 1.4543 NaN 1 0 Median 1.1654 0.99096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6033000 2724300 3308600 4652100 2096600 2555500 1380800 627750 753100 0 0 0 0 0 0 0 0 0 0 0 0 3828 2288 3983 19915;19916 20611;20612;20613 20611 3 CFIVGADNVGSK NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ YPKCFIVGADNVGSKQMQQIRMSLRGKAVV K C F S K Q 1 0 1 1 1 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 12 0 1265.6074 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;Q8NHW5;F8VWV4;F8VS58;F8VZS0 P05388 27 38 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.0088712 60.518 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3829 1865 3984 19917 20614 20614 1 CFVTTNCALQFSSR GPLFGLKLFRNLTPRCFVTTNCALQFSSRG RCFVTTNCALQFSSRGIRPGLTTVLARNLD R C F S R G 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 2 2 0 0 1 0 0 14 0 1689.7603 Q9NVH1;Q5TH61 Q9NVH1 235 248 DNAJC11 DnaJ homolog subfamily C member 11 yes no 3 0.058166 11.692 By matching By matching By matching By MS/MS By matching By matching 1 1 2 2 3 4 1.0518 0.90947 9.9754 13 Median 1.0676 1.0895 NaN 1 0 Median 1.1254 0.96596 NaN 1 0 Median 0.83554 0.83131 11.608 2 0 Median 1.0961 0.92674 11.193 2 0 Median 0.9067 0.91004 2.8943 3 0 Plateau 1.0995 0.89333 11.264 4 0 Median 67353000 33961000 33392000 402560 216400 186160 2179400 995630 1183800 11747000 6165500 5581000 6153600 2908900 3244700 38967000 20200000 18766000 7904100 3474300 4429800 3830 4130 3985 19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930 20615 20615 1 CGAALAGHQLIR CSLLRLQETLSAADRCGAALAGHQLIRGLG ADRCGAALAGHQLIRGLGQECVLSSSPAVL R C G I R G 3 1 0 0 1 1 0 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1265.6663 P78527 P78527 25 36 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.9515E-10 134.91 By MS/MS By MS/MS 2 2 1.1653 1.0729 10.755 4 Median NaN NaN NaN 0 0 Median 1.4678 1.1863 8.5217 2 1 Median 0.94893 1.0082 3.1215 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42299000 20298000 22001000 0 0 0 24824000 11532000 13292000 17475000 8766100 8708600 0 0 0 0 0 0 0 0 0 3831 2647 3986 19931;19932;19933;19934 20616;20617;20618;20619;20620;20621 20618 6 CGSVLVR KIGKPHTVPCKVTGRCGSVLVRLIPAPRGT VPCKVTGRCGSVLVRLIPAPRGTGIVSAPV R C G V R L 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 789.41671 P15880;H0YEN5;E9PQD7;E9PMM9;I3L404;E9PM36 P15880 188 194 RPS2 40S ribosomal protein S2 yes no 2 0.054459 50.966 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 436240 0 436240 0 0 0 436240 0 436240 0 0 0 0 0 0 0 0 0 0 0 0 3832 2020 3987 19935 20622 20622 1 CIALAQLLVEQNFPAIAIHR LEFNQVVIFVKSVQRCIALAQLLVEQNFPA QLLVEQNFPAIAIHRGMPQEERLSRYQQFK R C I H R G 4 1 1 0 1 2 1 0 1 3 3 0 0 1 1 0 0 0 0 1 0 0 20 0 2276.2463 H0Y400;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;A0A140T9X9;F6UJC5;A0A140TA18;H0YCC6 Q13838 300 319 DDX39B Spliceosome RNA helicase DDX39B no no 3 0.019086 15.254 By MS/MS By MS/MS 1 1 0.92082 0.86076 3.5494 2 Median NaN NaN NaN 0 0 Median 0.96665 0.83943 NaN 1 0 Median 0.87717 0.88264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3309400 1272900 2036500 0 0 0 1544200 620800 923420 1765100 652050 1113100 0 0 0 0 0 0 0 0 0 3833 2842;1146 3988 19936;19937 20623;20624;20625 20623 3 CIESLIAVFQK ______________________________ ETERCIESLIAVFQKYAGKDGYNYTLSKTE R C I Q K Y 1 0 0 0 1 1 1 0 0 2 1 1 0 1 0 1 0 0 0 1 0 0 11 0 1306.6955 P31949 P31949 13 23 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 2 0.032615 30.57 By matching By MS/MS 1 1 1.0376 0.92357 15.954 2 Median 0.87686 0.82504 NaN 1 0 Median 1.2278 1.0339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1999400 930640 1068800 821150 441290 379860 1178300 489340 688930 0 0 0 0 0 0 0 0 0 0 0 0 3834 2213 3989 19938;19939 20626;20627 20626 2 CIQDNRLVDLPISK RITKLFHFLGIFLAKCIQDNRLVDLPISKP KCIQDNRLVDLPISKPFFKLMCMGDIKSNM K C I S K P 0 1 1 2 1 1 0 0 0 2 2 1 0 0 1 1 0 0 0 1 0 0 14 1 1669.8821 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 2259 2272 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 0.068124 11.768 By MS/MS By matching By matching 1 1 2 1.0881 1.0268 48.668 4 Median 0.80689 0.8409 NaN 1 0 Median 0.50453 0.47454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5315 1.3188 7.1605 2 0 Median 18842000 9400100 9442100 13109000 6683000 6425900 3886800 2226200 1660700 0 0 0 0 0 0 0 0 0 1846500 490990 1355500 3835 137 3990 19940;19941;19942;19943 20628 20628 1 CKAEHDQLLLNYAK DTARERAKLQIELGKCKAEHDQLLLNYAKK KCKAEHDQLLLNYAKKESDLNGAQIKLREY K C K A K K 2 0 1 1 1 1 1 0 1 0 3 2 0 0 0 0 0 0 1 0 0 0 14 1 1701.8508 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 110 123 LMNB1 Lamin-B1 yes no 3 0.00018808 66.393 By MS/MS 3 0.90295 0.96404 54.379 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90295 0.96404 54.379 3 0 Plateau NaN NaN NaN 0 0 Median 32126000 16629000 15497000 0 0 0 0 0 0 0 0 0 0 0 0 32126000 16629000 15497000 0 0 0 3836 2084 3991 19944;19945;19946 20629;20630;20631 20629 3 CKELGITALHIK SPYAAMLAAQDVAQRCKELGITALHIKLRA AQRCKELGITALHIKLRATGGNRTKTPGPG R C K I K L 1 0 0 0 1 0 1 1 1 2 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1381.7752 P62263;A0A2R8Y811;E5RH77 P62263 85 96 RPS14 40S ribosomal protein S14 yes no 3 0.00073801 49.025 By MS/MS By matching 1 1 1.1945 1.1368 12.821 2 Median NaN NaN NaN 0 0 Median 1.1739 1.0382 NaN 1 0 Median 1.2154 1.2446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9063600 4233000 4830600 0 0 0 7079000 3267200 3811800 1984600 965750 1018800 0 0 0 0 0 0 0 0 0 3837 386 3992 19947;19948 20632;20633 20633 2 CLAALASLR TLSVNDPPDVLDRQKCLAALASLRHAKWFQ VLDRQKCLAALASLRHAKWFQARANGLKSC K C L L R H 3 1 0 0 1 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 973.53789 Q12906;K7EKJ9;K7EQR9 Q12906 203 211 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0049371 74.127 By MS/MS 1 0.99694 1.0486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99694 1.0486 NaN 1 1 Median NaN NaN NaN 0 0 Median 4209900 2212800 1997000 0 0 0 0 0 0 0 0 0 0 0 0 4209900 2212800 1997000 0 0 0 3838 2769 3993 19949 20634 20634 1 CLELFSELAEDKENYK QSKILKVIRKNIVKKCLELFSELAEDKENY LELFSELAEDKENYKKFYEAFSKNLKLGIH K C L Y K K 1 0 1 1 1 0 4 0 0 0 3 2 0 1 0 1 0 0 1 0 0 0 16 1 1986.9245 P08238 P08238 412 427 HSP90AB1 Heat shock protein HSP 90-beta yes yes 3 0.063363 10.658 By MS/MS 1 1.0215 0.988 NaN 1 Median NaN NaN NaN 0 0 Median 1.0215 0.988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2163100 1050400 1112700 0 0 0 2163100 1050400 1112700 0 0 0 0 0 0 0 0 0 0 0 0 3839 1899 3994 19950 20635 20635 1 CLELFTELAEDKENYK QSKILKVIRKNLVKKCLELFTELAEDKENY LELFTELAEDKENYKKFYEQFSKNIKLGIH K C L Y K K 1 0 1 1 1 0 4 0 0 0 3 2 0 1 0 0 1 0 1 0 0 0 16 1 2000.9401 P07900 P07900 420 435 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.00018898 44.807 By MS/MS 1 1.0498 1.0151 NaN 1 Median NaN NaN NaN 0 0 Median 1.0498 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1766400 816900 949460 0 0 0 1766400 816900 949460 0 0 0 0 0 0 0 0 0 0 0 0 3840 1894 3995 19951 20636;20637 20636 2 CLHPLANETFVAK YKNRFWHDTCFRCAKCLHPLANETFVAKDN AKCLHPLANETFVAKDNKILCNKCTTREDS K C L A K D 2 0 1 0 1 0 1 0 1 0 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1498.7602 Q5JXI8 Q5JXI8 71 83 FHL1 no no 2;3 1.0083E-06 98.943 By MS/MS By MS/MS 2 4 1.2543 1.0781 15.045 6 Median 1.3432 1.2403 3.3193 2 0 Median 1.1773 0.9915 11.411 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61065000 27043000 34022000 23145000 9122100 14023000 37920000 17921000 19999000 0 0 0 0 0 0 0 0 0 0 0 0 3841 3060 3996 19952;19953;19954;19955;19956;19957 20638;20639;20640;20641;20642;20643;20644 20639 7 CLMDQATDPNILGR AQEPESGLSEETQVKCLMDQATDPNILGRT KCLMDQATDPNILGRTWEGWEPWM______ K C L G R T 1 1 1 2 1 1 0 1 0 1 2 0 1 0 1 0 1 0 0 0 0 0 14 0 1602.7494 P78527 P78527 4106 4119 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.4029E-05 130.94 By MS/MS By MS/MS 1 1 1.1255 1.0598 20.594 2 Median NaN NaN NaN 0 0 Median 1.4583 1.226 NaN 1 0 Median 0.86862 0.9162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13429000 6604600 6824300 0 0 0 1914900 709110 1205800 11514000 5895500 5618500 0 0 0 0 0 0 0 0 0 3842 2647 3997 19958;19959 20645;20646;20647 20646 3 CLSSLKDER YGVPVTLIGEAVFARCLSSLKDERIQASKK EAVFARCLSSLKDERIQASKKLKGPQKFQF R C L E R I 0 1 0 1 1 0 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 9 1 1106.539 P52209;K7ELN9 P52209 289 297 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.0088116 76.827 By MS/MS 1 1.0768 0.98439 NaN 1 Median NaN NaN NaN 0 0 Median 1.0768 0.98439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1298000 572640 725360 0 0 0 1298000 572640 725360 0 0 0 0 0 0 0 0 0 0 0 0 3843 2447 3998 19960 20648 20648 1 CLTTDEYDGHSTYPSHQYQ SRVISKHDLGHFMLRCLTTDEYDGHSTYPS DEYDGHSTYPSHQYQ_______________ R C L Y Q - 0 0 0 2 1 2 1 1 2 0 1 0 0 0 1 2 3 0 3 0 0 0 19 0 2300.928 P30043;M0R192;A0A2R8YEP4 P30043 188 206 BLVRB Flavin reductase (NADPH) yes no 3 0.0065723 33.308 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1408700 0 0 0 0 0 1408700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3844 2180 3999 19961 20649 20649 1 CMMAQYNR DLDSSCKEAADGYQRCMMAQYNRHDSPEDV AADGYQRCMMAQYNRHDSPEDVKRRAMADP R C M N R H 1 1 1 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 8 0 1072.4252 P31948;H0YGI8 P31948 471 478 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0032511 99.919 By MS/MS 1 1.0469 0.90844 NaN 1 Median NaN NaN NaN 0 0 Median 1.0469 0.90844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3632500 1797100 1835400 0 0 0 3632500 1797100 1835400 0 0 0 0 0 0 0 0 0 0 0 0 3845 2212 4000 19962 20650 20650 1 CNGVLEGIR KAGKLDPHLVLDQLRCNGVLEGIRICRQGF VLDQLRCNGVLEGIRICRQGFPNRVVFQEF R C N I R I 0 1 1 0 1 0 1 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1016.5073 P35579;A0A087X0T3;P12883;Q9UKX3;Q9Y623;P13533;P11055;A7E2Y1;Q7Z406;P35580 P35579 694 702 MYH9;MYH7B;MYH7;MYH13;MYH4;MYH6;MYH3;MYH14;MYH10 Myosin-9;Myosin-7;Myosin-13;Myosin-4;Myosin-6;Myosin-3;Myosin-7B;Myosin-14;Myosin-10 no no 2 0.0028129 84.743 By MS/MS 1 1.4546 1.2387 NaN 1 Median NaN NaN NaN 0 0 Median 1.4546 1.2387 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3708000 1432100 2275800 0 0 0 3708000 1432100 2275800 0 0 0 0 0 0 0 0 0 0 0 0 3846 2244;2245;3242 4001 19963 20651 20651 1 CNLLAEK AATDCIAKEVVDPTKCNLLAEKQYGFCKGS KEVVDPTKCNLLAEKQYGFCKGSVIQKALG K C N E K Q 1 0 1 0 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 846.42694 CON__P12763;P02765;C9JV77 CON__P12763 219 225 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes no 2 0.032232 63.306 By MS/MS 1 0.015579 0.013293 NaN 1 Median NaN NaN NaN 0 0 Median 0.015579 0.013293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3432000 3374100 57909 0 0 0 3432000 3374100 57909 0 0 0 0 0 0 0 0 0 0 0 0 + 3847 755 4002 19964 20652 20652 1 CNNVLYIR IDGALSGHLGEVLIRCNNVLYIRGVEEEEE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ R C N I R G 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1050.528 P62306 P62306 66 73 SNRPF Small nuclear ribonucleoprotein F yes yes 2 0.00023338 155.73 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.0885 1.0331 19.199 6 Median 1.0699 1.0447 NaN 1 0 Median 1.3159 1.0643 NaN 1 0 Median 1.0219 1.0216 NaN 1 0 Median 1.1364 0.90616 NaN 1 0 Median 1.1076 1.1329 NaN 1 0 Median 0.85704 0.66765 NaN 1 0 Median 31789000 15070000 16719000 1319000 788320 530710 8614500 3658400 4956100 16466000 8354300 8112200 347160 155440 191710 4419400 1846700 2572600 622450 267040 355410 3848 2582 4003 19965;19966;19967;19968;19969;19970 20653;20654;20655;20656;20657;20658;20659 20657 7 CPFTGNVSIR KTPKEAIEGTYIDKKCPFTGNVSIRGRILS YIDKKCPFTGNVSIRGRILSGVVTKMKMQR K C P I R G 0 1 1 0 1 0 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 10 0 1149.5601 M0QZC5;P62280 M0QZC5 60 69 RPS11 40S ribosomal protein S11 yes no 2 0.0010649 68.846 By MS/MS By MS/MS 1 3 1.1019 1.007 14.646 4 Median 1.0572 1.0442 NaN 1 0 Median 1.1485 0.9711 17.782 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60634000 29257000 31377000 5395900 2685200 2710700 55238000 26571000 28666000 0 0 0 0 0 0 0 0 0 0 0 0 3849 1422 4004 19971;19972;19973;19974 20660;20661;20662;20663;20664;20665 20663 6 CPLLKPWALTFSYGR QSEEEASINLNAINKCPLLKPWALTFSYGR CPLLKPWALTFSYGRALQASALKAWGGKKE K C P G R A 1 1 0 0 1 0 0 1 0 0 3 1 0 1 2 1 1 1 1 0 0 0 15 1 1807.9443 J3KPS3;P04075;H3BQN4;H3BR68 J3KPS3 294 308 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.024074 35.414 By MS/MS 1 0.82344 0.77206 NaN 1 Median NaN NaN NaN 0 0 Median 0.82344 0.77206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3118700 1745800 1372900 0 0 0 3118700 1745800 1372900 0 0 0 0 0 0 0 0 0 0 0 0 3850 1310 4005 19975 20666 20666 1 CPNLTHLNLSGNK SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK EKCPNLTHLNLSGNKIKDLSTIEPLKKLEN K C P N K I 0 0 3 0 1 0 0 1 1 0 3 1 0 0 1 1 1 0 0 0 0 0 13 0 1466.73 P39687;H0YN26 P39687 87 99 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 3 0.057424 12.792 By MS/MS By matching 1 1 0.82818 0.74168 7.0023 2 Median 0.74279 0.70586 NaN 1 0 Median 0.92339 0.77933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8671900 5108600 3563300 5496100 3397200 2098900 3175800 1711500 1464300 0 0 0 0 0 0 0 0 0 0 0 0 3851 2282 4006 19976;19977 20667 20667 1 CQEVISWLDANTLAEKDEFEHK KGKISEADKKKVLDKCQEVISWLDANTLAE LDANTLAEKDEFEHKRKELEQVCNPIISGL K C Q H K R 2 0 1 2 1 1 4 0 1 1 2 2 0 1 0 1 1 1 0 1 0 0 22 1 2661.2381 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 575 596 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 4 3.7732E-07 46.178 By MS/MS By MS/MS By matching 1 1 1 1.1551 1.1293 16.882 3 Median 1.1988 1.1293 NaN 1 0 Median 1.0218 0.9576 NaN 1 0 Median 1.1551 1.3422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10545000 4574200 5970500 6954800 2908300 4046500 2865700 1331500 1534200 724280 334460 389810 0 0 0 0 0 0 0 0 0 3852 278 4007 19978;19979;19980 20668;20669;20670 20669 3 CQSLTEDLEFR QLADETLLKVDLENRCQSLTEDLEFRKSMY LENRCQSLTEDLEFRKSMYEEEINETRRKH R C Q F R K 0 1 0 1 1 1 2 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 11 0 1396.6293 P20700;E9PBF6;A0A0D9SFE5 P20700 198 208 LMNB1 Lamin-B1 yes no 2 0.00015742 90.108 By MS/MS 2 0.61787 0.63699 8.6095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61787 0.63699 8.6095 2 0 Median NaN NaN NaN 0 0 Median 6753100 4001300 2751800 0 0 0 0 0 0 0 0 0 0 0 0 6753100 4001300 2751800 0 0 0 3853 2084 4008 19981;19982 20671;20672 20671 2 CQSLTEDLEFRK QLADETLLKVDLENRCQSLTEDLEFRKSMY ENRCQSLTEDLEFRKSMYEEEINETRRKHE R C Q R K S 0 1 0 1 1 1 2 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 1 1524.7242 P20700;E9PBF6;A0A0D9SFE5 P20700 198 209 LMNB1 Lamin-B1 yes no 2;3 5.8589E-06 110.53 By MS/MS 3 0.87564 0.96329 17.06 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87564 0.96329 17.06 3 2 Plateau NaN NaN NaN 0 0 Median 39209000 20337000 18872000 0 0 0 0 0 0 0 0 0 0 0 0 39209000 20337000 18872000 0 0 0 3854 2084 4009 19983;19984;19985 20673;20674;20675 20674 3 CQVFEETQIGGER IQTSVNALSADVLGRCQVFEETQIGGERYN GRCQVFEETQIGGERYNFFTGCPKAKTCTF R C Q E R Y 0 1 0 0 1 2 3 2 0 1 0 0 0 1 0 0 1 0 0 1 0 0 13 0 1551.6988 Q99832 Q99832 345 357 CCT7 T-complex protein 1 subunit eta yes yes 2 0.0040594 42.001 By MS/MS 1 1.0881 0.94099 NaN 1 Median NaN NaN NaN 0 0 Median 1.0881 0.94099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1927800 1027700 900020 0 0 0 1927800 1027700 900020 0 0 0 0 0 0 0 0 0 0 0 0 3855 3771 4010 19986 20676;20677 20676 2 CSGPGLSPGMVR FKVPVHDVTDASKVKCSGPGLSPGMVRANL KVKCSGPGLSPGMVRANLPQSFQVDTSKAG K C S V R A 0 1 0 0 1 0 0 3 0 0 1 0 1 0 2 2 0 0 0 1 0 0 12 0 1216.5693 P21333;Q60FE5;A0A087WWY3 P21333 1453 1464 FLNA Filamin-A no no 2 0.00036599 96.665 By MS/MS 1 3.04 2.429 NaN 1 Median NaN NaN NaN 0 0 Median 3.04 2.429 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40248000 12214000 28034000 0 0 0 40248000 12214000 28034000 0 0 0 0 0 0 0 0 0 0 0 0 3856 2088;3120 4011 19987 20678 20678 1 CTGGEVGATSALAPK PPKFDPNEIKVVYLRCTGGEVGATSALAPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI R C T P K I 3 0 0 0 1 0 1 3 0 0 1 1 0 0 1 1 2 0 0 1 0 0 15 0 1417.6871 P30050 P30050 17 31 RPL12 60S ribosomal protein L12 yes yes 2 0.00033109 53.08 By MS/MS 1 0.9445 0.80897 NaN 1 Median NaN NaN NaN 0 0 Median 0.9445 0.80897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9074600 4435300 4639300 0 0 0 9074600 4435300 4639300 0 0 0 0 0 0 0 0 0 0 0 0 3857 2185 4012 19988 20679;20680;20681 20681 3 CTVFHGAQVEDAFR LVQAGIRDGVVRPLKCTVFHGAQVEDAFRY KCTVFHGAQVEDAFRYMAQGKHIGKVVVQV K C T F R Y 2 1 0 1 1 1 1 1 1 0 0 0 0 2 0 0 1 0 0 2 0 0 14 0 1635.7464 P49327;A0A0U1RQF0 P49327 1828 1841 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 1.3832E-08 103.76 By MS/MS 4 1.5342 1.2941 4.3952 4 Median NaN NaN NaN 0 0 Median 1.5342 1.2941 4.3952 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15421000 6223500 9197500 0 0 0 15421000 6223500 9197500 0 0 0 0 0 0 0 0 0 0 0 0 3858 2377 4013 19989;19990;19991;19992 20682;20683;20684;20685;20686;20687 20682 6 CVANNQVETLEK GIRARSARLQWFCDRCVANNQVETLEKLVE CDRCVANNQVETLEKLVELTQKLFECDRDQ R C V E K L 1 0 2 0 1 1 2 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1403.6715 P42704 P42704 930 941 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 3.9932E-06 120.68 By MS/MS 1 1.4971 1.2644 NaN 1 Median NaN NaN NaN 0 0 Median 1.4971 1.2644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15641000 6154600 9486300 0 0 0 15641000 6154600 9486300 0 0 0 0 0 0 0 0 0 0 0 0 3859 2315 4014 19993 20688;20689 20688 2 CVLLSNLSSTSHVPEVDPGSAELQK LVNCLRREPGGNRLRCVLLSNLSSTSHVPE SHVPEVDPGSAELQKVLQGDLVMNVYRDGA R C V Q K V 1 0 1 1 1 1 2 1 1 0 4 1 0 0 2 5 1 0 0 3 0 0 25 0 2666.3221 P49327;A0A0U1RQF0 P49327 1471 1495 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.00037875 26.759 By MS/MS By MS/MS 1 2 0.9802 0.85977 32.742 3 Median 0.53212 0.51207 NaN 1 0 Median 1.0186 0.89828 6.1957 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8238400 3967400 4271000 4057700 2221200 1836500 4180700 1746200 2434400 0 0 0 0 0 0 0 0 0 0 0 0 3860 2377 4015 19994;19995;19996 20690;20691;20692 20690 3 CVSTLLDLIQTK AIGRCAIKVEQSAERCVSTLLDLIQTKVNY AERCVSTLLDLIQTKVNYVVQEAIVVIRDI R C V T K V 0 0 0 1 1 1 0 0 0 1 3 1 0 0 0 1 2 0 0 1 0 0 12 0 1389.7538 Q10567;C9J1E7;K7EJ01;H7C034;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 353 364 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.00063696 63.283 By MS/MS 2 1.1658 1.0243 11.178 2 Median NaN NaN NaN 0 0 Median 1.1658 1.0243 11.178 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3731800 1692500 2039400 0 0 0 3731800 1692500 2039400 0 0 0 0 0 0 0 0 0 0 0 0 3861 128;2752 4016 19997;19998 20693 20693 1 CYEMASHLR LMGKEGVHGGLINKKCYEMASHLRRSQY__ GLINKKCYEMASHLRRSQY___________ K C Y L R R 1 1 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 9 0 1165.5008 P07737;K7EJ44;CON__P02584 P07737 128 136 PFN1 Profilin-1 yes no 2 0.00052767 117.4 By MS/MS By MS/MS By MS/MS 1 1 1 1.1586 0.98786 23.957 3 Median 1.3984 1.359 NaN 1 0 Median 1.1586 0.98786 NaN 1 0 Median 0.83779 0.85009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29673000 13884000 15788000 888050 402750 485310 27782000 12829000 14953000 1002700 652190 350470 0 0 0 0 0 0 0 0 0 3862 1889 4017 19999;20000;20001 20694;20695;20696;20697 20697 4 CYEMASHLRR LMGKEGVHGGLINKKCYEMASHLRRSQY__ LINKKCYEMASHLRRSQY____________ K C Y R R S 1 2 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 10 1 1321.602 P07737;K7EJ44;CON__P02584 P07737 128 137 PFN1 Profilin-1 yes no 3 0.0004444 62.303 By MS/MS By MS/MS 1 2 1.2289 1.0478 16.016 3 Plateau 1.1383 1.1357 NaN 1 0 Median 1.0964 0.9348 16.138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14607000 6922600 7684500 2358900 1151500 1207400 12248000 5771000 6477100 0 0 0 0 0 0 0 0 0 0 0 0 3863 1889 4018 20002;20003;20004 20698;20699 20699 2 CYLTMTQALEAR LGVQDKLVQTPLTDRCYLTMTQALEARLGG TDRCYLTMTQALEARLGGSPFGPAGTGKTE R C Y A R L 2 1 0 0 1 1 1 0 0 0 2 0 1 0 0 0 2 0 1 0 0 0 12 0 1455.685 Q14204 Q14204 1888 1899 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00018773 85.958 By MS/MS By MS/MS 1 1 1.1417 1.0867 5.6474 2 Median NaN NaN NaN 0 0 Median 1.235 1.0442 NaN 1 1 Median 1.0555 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7798700 3346500 4452300 0 0 0 2196700 974110 1222500 5602100 2372400 3229700 0 0 0 0 0 0 0 0 0 3864 2865 4019 20005;20006 20700;20701 20700 2 CYSCGEFGHIQK PGHLARDCDHADEQKCYSCGEFGHIQKDCT EQKCYSCGEFGHIQKDCTKVKCYRCGETGH K C Y Q K D 0 0 0 0 2 1 1 2 1 1 0 1 0 1 0 1 0 0 1 0 0 0 12 0 1484.6177 P62633 P62633 119 130 CNBP Cellular nucleic acid-binding protein yes yes 3 0.0078946 28.764 By MS/MS 1 1.0736 0.9313 NaN 1 Median NaN NaN NaN 0 0 Median 1.0736 0.9313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1455600 671200 784400 0 0 0 1455600 671200 784400 0 0 0 0 0 0 0 0 0 0 0 0 3865 2591 4020 20007 20702 20702 1 DAAAALAAMNGR TSNDPYCFVEFYEHRDAAAALAAMNGRKIL EHRDAAAALAAMNGRKILGKEVKVNWATTP R D A G R K 6 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 12 0 1130.5502 Q01085;E7ETJ9;E7ETC0;A6NKZ9 Q01085 60 71 TIAL1 Nucleolysin TIAR yes no 2 4.8053E-06 120.12 By MS/MS 1 1.1325 1.2355 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1325 1.2355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13074000 6819000 6254500 0 0 0 0 0 0 13074000 6819000 6254500 0 0 0 0 0 0 0 0 0 3866 2682 4021 20008 20703;20704 20703 2 DAAAALSSASALTGLTK LLKPAPSGLPSERKRDAAAALSSASALTGL AAALSSASALTGLTKRPKLSSTPPLSALGR R D A T K R 6 0 0 1 0 0 0 1 0 0 3 1 0 0 0 3 2 0 0 0 0 0 17 0 1546.8203 Q8N201 Q8N201 60 76 INTS1 Integrator complex subunit 1 yes yes 2 2.3664E-05 73.848 By MS/MS 1 1.029 1.1454 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.029 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2155700 1222700 933010 0 0 0 0 0 0 2155700 1222700 933010 0 0 0 0 0 0 0 0 0 3867 3360 4022 20009 20705;20706 20706 2 DAAASASTPAQAPTSDSPVAEDASR DDLATDARGRGAGRRDAAASASTPAQAPTS QAPTSDSPVAEDASRRRPCRACVDFKTWMR R D A S R R 8 1 0 3 0 1 1 0 0 0 0 0 0 0 3 5 2 0 0 1 0 0 25 0 2372.0728 H3BRW3;H3BRD2;P55789 H3BRW3 43 67 GFER Sulfhydryl oxidase;FAD-linked sulfhydryl oxidase ALR yes no 3 4.6553E-05 29.959 By MS/MS 1 0.61101 0.5192 NaN 1 Median NaN NaN NaN 0 0 Median 0.61101 0.5192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1619900 1001300 618590 0 0 0 1619900 1001300 618590 0 0 0 0 0 0 0 0 0 0 0 0 3868 1229 4023 20010 20707 20707 1 DAADLLSPLALLR LPLEKRAPSIALGFRDAADLLSPLALLRFS FRDAADLLSPLALLRFSAVARGQDPPSGDR R D A L R F 3 1 0 2 0 0 0 0 0 0 5 0 0 0 1 1 0 0 0 0 0 0 13 0 1366.782 D6RIZ4;D6RA47;D6RE79;Q14728 D6RIZ4 241 253 MFSD10 Major facilitator superfamily domain-containing protein 10 yes no 2 0.00082792 64.297 By MS/MS By matching By matching 2 1 2 0.90342 0.90505 7.9701 5 Median 0.92267 0.92163 2.5663 2 0 Median 1.2074 1.0745 NaN 1 0 Median 0.8012 0.89021 1.4149 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5678100 2815500 2862600 5204100 2564900 2639200 69485 33757 35728 404510 216820 187690 0 0 0 0 0 0 0 0 0 3869 810 4024 20011;20012;20013;20014;20015 20708;20709 20709 2 DAAFATLVSDR NNRLGSALSWSIRAKDAAFATLVSDRFLRD IRAKDAAFATLVSDRFLRDYCERGCFSDLD K D A D R F 3 1 0 2 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1164.5775 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7 Q9BW27 495 505 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.00014634 116.52 By MS/MS By MS/MS By MS/MS 1 1 1 0.51384 0.51815 86.282 3 Median NaN NaN NaN 0 0 Median 0.15949 0.13797 NaN 1 1 Median 0.51384 0.51815 NaN 1 0 Median 0.83472 0.69782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44631000 31569000 13062000 0 0 0 10834000 9448700 1384800 31114000 20794000 10321000 2683000 1326400 1356600 0 0 0 0 0 0 3870 3861 4025 20016;20017;20018 20710;20711;20712;20713;20714 20711 5 DAAFEALGTALK AALLKHINDSAPEVRDAAFEALGTALKVVG EVRDAAFEALGTALKVVGEKAVNPFLADVD R D A L K V 4 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1205.6292 Q14008 Q14008 457 468 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 2.5339E-05 96.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 3 1 1.1608 1.0979 23.496 11 Median 1.1051 1.0671 NaN 1 0 Median 1.0217 0.90601 NaN 1 0 Median 1.2953 1.3779 25.577 5 0 Median 1.2031 1.0827 7.8522 3 0 Median NaN NaN NaN 0 0 Median 1.1543 0.98911 NaN 1 0 Median 85089000 37694000 47396000 13676000 5987200 7688900 4888200 2427500 2460700 55785000 24443000 31342000 8541400 3801100 4740300 0 0 0 2198700 1035200 1163500 3871 2850 4026 20019;20020;20021;20022;20023;20024;20025;20026;20027;20028;20029 20715;20716;20717;20718;20719;20720;20721;20722;20723;20724;20725 20724 11 DAAGIAMEAIAFAR GGRTMVQLFEKGYGKDAAGIAMEAIAFARN KDAAGIAMEAIAFARNQGFDVVLVDTAGRM K D A A R N 6 1 0 1 0 0 1 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 14 0 1405.7024 P08240 P08240 497 510 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.0097404 48.44 By MS/MS 1 1.2293 1.2761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2293 1.2761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 936250 361790 574460 0 0 0 0 0 0 936250 361790 574460 0 0 0 0 0 0 0 0 0 3872 1900 4027 20030 20726 20726 1 DAAINSLVEIYR PHICNLLGDPNSQVRDAAINSLVEIYRHVG QVRDAAINSLVEIYRHVGERVRADLSKKGL R D A Y R H 2 1 1 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 1 0 0 12 0 1362.7143 Q7Z460;F8WA11 Q7Z460 185 196 CLASP1 CLIP-associating protein 1 yes no 2 0.012955 35.944 By MS/MS By matching By matching 1 2 1 1.151 1.0528 5.4957 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0473 1.1258 NaN 1 0 Median 1.1959 1.0433 5.849 2 0 Median NaN NaN NaN 0 0 Median 1.1526 1.0193 NaN 1 0 Median 1088300 453360 634930 0 0 0 0 0 0 832400 347960 484440 131020 54657 76361 0 0 0 124870 50740 74131 3873 1090 4028 20031;20032;20033;20034 20727 20727 1 DAAIYLVTSLASK LQEYAKNPSVNWKHKDAAIYLVTSLASKAQ HKDAAIYLVTSLASKAQTQKHGITQANELV K D A S K A 3 0 0 1 0 0 0 0 0 1 2 1 0 0 0 2 1 0 1 1 0 0 13 0 1350.7395 P55060 P55060 428 440 CSE1L Exportin-2 yes yes 2 3.8991E-05 90.685 By MS/MS 2 0.99647 0.86204 11.664 2 Median NaN NaN NaN 0 0 Median 0.99647 0.86204 11.664 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6384900 2892200 3492700 0 0 0 6384900 2892200 3492700 0 0 0 0 0 0 0 0 0 0 0 0 3874 2493 4029 20035;20036 20728;20729 20728 2 DAALATALGDK AQIKLREYEAALNSKDAALATALGDKKSLE LNSKDAALATALGDKKSLEGDLEDLKDQIA K D A D K K 4 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1044.5451 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 146 156 LMNB1 Lamin-B1 yes no 2 0.00014771 88.681 By MS/MS By matching By MS/MS By matching 1 2 4 2 0.84137 0.86133 38.231 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87374 0.88276 NaN 1 0 Median 1.0818 0.98608 82.319 2 0 Median 0.79986 0.79661 23.371 4 0 Linear 1.0646 0.89486 0.87208 2 0 Median 37101000 18998000 18103000 0 0 0 0 0 0 12181000 5997700 6183400 3225800 1398600 1827200 19138000 10412000 8725700 2556800 1190100 1366700 3875 2084 4030 20037;20038;20039;20040;20041;20042;20043;20044;20045 20730;20731;20732;20733 20732 4 DAALATALGDKK AQIKLREYEAALNSKDAALATALGDKKSLE NSKDAALATALGDKKSLEGDLEDLKDQIAQ K D A K K S 4 0 0 2 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1172.6401 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 146 157 LMNB1 Lamin-B1 yes no 2 4.0382E-08 139.43 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 9 10 0.95948 0.99075 38.534 24 Median 0.48156 0.47445 NaN 1 0 Median 0.81037 0.75887 NaN 1 0 Median 0.90887 0.98567 NaN 1 0 Median 2.4862 2.3614 40.467 3 2 Median 0.84086 0.91413 19.878 9 2 Median 1.3678 1.2101 11.268 9 3 Median 1073200000 553550000 519680000 3466700 2310400 1156300 3709800 2266600 1443200 103790000 52732000 51059000 50911000 16199000 34712000 806720000 437680000 369040000 104640000 42363000 62273000 3876 2084 4031 20046;20047;20048;20049;20050;20051;20052;20053;20054;20055;20056;20057;20058;20059;20060;20061;20062;20063;20064;20065;20066;20067;20068;20069;20070 20734;20735;20736;20737;20738;20739;20740;20741;20742;20743;20744;20745;20746;20747;20748;20749;20750;20751;20752;20753;20754;20755;20756;20757;20758;20759;20760;20761;20762;20763;20764;20765;20766;20767 20763 34 DAALAVAEAMADK PKLKELNLSFCEIKRDAALAVAEAMADKAE KRDAALAVAEAMADKAELEKLDLNGNTLGE R D A D K A 6 0 0 2 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 13 0 1274.6177 P46060;H0Y4Q3 P46060 308 320 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0012216 60.434 By matching By MS/MS By matching 1 2 1 0.98399 0.97714 15.146 3 Median 0.98399 0.97714 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83597 0.84422 NaN 1 0 Median 1.3145 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6421900 3375700 3046100 1269000 616410 652550 0 0 0 4354800 2370000 1984800 798080 389360 408720 0 0 0 0 0 0 3877 2336 4032 20071;20072;20073;20074 20768;20769 20769 2 DAALAVAEAMADKAELEK PKLKELNLSFCEIKRDAALAVAEAMADKAE LAVAEAMADKAELEKLDLNGNTLGEEGCEQ R D A E K L 7 0 0 2 0 0 3 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 18 1 1844.919 P46060;H0Y4Q3 P46060 308 325 RANGAP1 Ran GTPase-activating protein 1 yes no 3 0.032085 14.472 By matching By matching By MS/MS 1 1 2 1.227 1.2524 4.7209 4 Median 1.1922 1.2398 NaN 1 0 Median 1.2628 1.2206 NaN 1 0 Median 1.2005 1.3109 5.0228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6072400 2844800 3227700 565400 237890 327510 1057500 520280 537220 4449500 2086600 2362900 0 0 0 0 0 0 0 0 0 3878 2336 4033 20075;20076;20077;20078 20770 20770 1 DAANILVMGVENSAK DLASHGYVEVTSLPRDAANILVMGVENSAK DAANILVMGVENSAKEGDPGTIFFFREGAA R D A A K E 3 0 2 1 0 0 1 1 0 1 1 1 1 0 0 1 0 0 0 2 0 0 15 0 1530.7712 A0A087WXU0;A0A2R8Y4J4;Q9NWS8;A0A2R8Y4P5;A0A2R8YFC3 A0A087WXU0 35 49 RMND1 Required for meiotic nuclear division protein 1 homolog yes no 2 0.0061453 34.378 By MS/MS 1 1.108 1.0909 NaN 1 Median 1.108 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1230800 602480 628300 1230800 602480 628300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3879 71 4034 20079 20771 20771 1 DAANLLNDALAIR TMLNILALVDQNKYKDAANLLNDALAIREK YKDAANLLNDALAIREKTLGKDHPAVAATL K D A I R E 4 1 2 2 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 13 0 1368.7361 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 271 283 KLC1 Kinesin light chain 1 yes no 2 0.0036405 43.512 By MS/MS 1 0.99385 0.98554 NaN 1 Median 0.99385 0.98554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1496900 680960 815950 1496900 680960 815950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3880 896 4035 20080 20772;20773 20773 2 DAASAGLGSIGVK AVLIREGVSSTTPAKDAASAGLGSIGVKFS AKDAASAGLGSIGVKFSRDRESRSPFLKPD K D A V K F 3 0 0 1 0 0 0 3 0 1 1 1 0 0 0 2 0 0 0 1 0 0 13 0 1144.6088 Q9H7N4 Q9H7N4 853 865 SCAF1 Splicing factor, arginine/serine-rich 19 yes yes 2 3.514E-05 83.397 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3881 3983 4036 20081 20774 20774 1 DAASLESQLQDTQELLQEETR TLLEEAEKKGIKFAKDAASLESQLQDTQEL SQLQDTQELLQEETRQKLNLSSRIRQLEEE K D A T R Q 2 1 0 2 0 4 4 0 0 0 4 0 0 0 0 2 2 0 0 0 0 0 21 0 2403.1401 P35580 P35580 1309 1329 MYH10 Myosin-10 yes yes 2;3 1.9581E-11 70.332 By MS/MS By matching By matching By matching 2 1 1 1 0.94505 0.9094 32.772 5 Median 0.98224 0.96574 8.5005 2 0 Median 1.1757 0.98338 NaN 1 0 Median 0.56011 0.62499 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45335 0.48351 NaN 1 0 Median NaN NaN NaN 0 0 Median 8433000 4305500 4127500 5820100 2832000 2988100 1158000 529370 628680 361690 241680 120010 0 0 0 1093100 702370 390740 0 0 0 3882 2245 4037 20082;20083;20084;20085;20086 20775;20776;20777;20778 20778 4 DAASVDKVLELK PVTGRSRGFGFVLFKDAASVDKVLELKEHK LFKDAASVDKVLELKEHKLDGKLIDPKRAK K D A L K E 2 0 0 2 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 2 0 0 12 1 1286.7082 A0A087WUK2;O14979 A0A087WUK2 198 209 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2;3 0.0041678 86.898 By MS/MS 3 0.99609 1.0583 16.303 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99609 1.0583 16.303 3 1 Plateau NaN NaN NaN 0 0 Median 29340000 12546000 16795000 0 0 0 0 0 0 0 0 0 0 0 0 29340000 12546000 16795000 0 0 0 3883 32 4038 20087;20088;20089 20779;20780;20781 20779 3 DAASVDKVLELKEHK PVTGRSRGFGFVLFKDAASVDKVLELKEHK DAASVDKVLELKEHKLDGKLIDPKRAKALK K D A H K L 2 0 0 2 0 0 2 0 1 0 2 3 0 0 0 1 0 0 0 2 0 0 15 2 1680.9046 A0A087WUK2;O14979 A0A087WUK2 198 212 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 3 1.0325E-06 90.707 By MS/MS By MS/MS 1 1 1.1245 1.1412 0.06446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2129 1.1417 NaN 1 1 Median 1.0425 1.1407 NaN 1 1 Median NaN NaN NaN 0 0 Median 20131000 10232000 9898700 0 0 0 0 0 0 0 0 0 1706800 802810 904000 18424000 9429500 8994700 0 0 0 3884 32 4039 20090;20091 20782;20783 20782 2 DAATIMQPYFTSNGLVTK DEGEEAASPMLQIQRDAATIMQPYFTSNGL TIMQPYFTSNGLVTKALEHAFQLEHIMDLT R D A T K A 2 0 1 1 0 1 0 1 0 1 1 1 1 1 1 1 3 0 1 1 0 0 18 0 1955.9663 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2418 2435 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.4236E-12 141.38 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.89311 0.95355 13.349 5 Median 0.85937 0.86248 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83991 0.89722 8.6111 2 0 Median 1.0323 0.96975 NaN 1 0 Median 1.1336 1.1819 NaN 1 0 Median NaN NaN NaN 0 0 Median 61088000 33258000 27830000 28940000 15719000 13221000 0 0 0 30363000 16688000 13675000 889470 413570 475900 895640 437590 458050 0 0 0 3885 2865 4040;4041 20092;20093;20094;20095;20096 20784;20785;20786;20787;20788;20789;20790;20791;20792 20785 1547 9 DAATVTQMHFLTGQGR KIYGAPGVEFTGLHRDAATVTQMHFLTGQG AATVTQMHFLTGQGRLLSLLDDSSLHLWEI R D A G R L 2 1 0 1 0 2 0 2 1 0 1 0 1 1 0 0 3 0 0 1 0 0 16 0 1731.8363 A0A087WW77;Q15334 A0A087WW77 74 89 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 2 0.0075331 46.069 By MS/MS 1 1.0367 1.0253 NaN 1 Median 1.0367 1.0253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7695800 4053900 3641800 7695800 4053900 3641800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3886 55 4042 20097 20793 20793 0 DADDAVYELNGK DLKNGYGFVEFEDSRDADDAVYELNGKELC DSRDADDAVYELNGKELCGERVIVEHARGP R D A G K E 2 0 1 3 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1308.5834 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 47 58 SRSF6 Serine/arginine-rich splicing factor 6 no no 2 3.7171E-06 123.86 By MS/MS By MS/MS 1 2 1.151 1.0317 7.1645 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0022 0.97541 NaN 1 0 Median 1.227 1.0771 6.0922 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14309000 6657500 7651700 0 0 0 0 0 0 8047600 3957200 4090400 6261600 2700300 3561300 0 0 0 0 0 0 3887 485 4043 20098;20099;20100 20794;20795;20796;20797;20798;20799 20794 6 DADETKEWIEEK SQLLGSAHEVQRFHRDADETKEWIEEKNQA FHRDADETKEWIEEKNQALNTDNYGHDLAS R D A E K N 1 0 0 2 0 0 4 0 0 1 0 2 0 0 0 0 1 1 0 0 0 0 12 1 1491.6729 A0A0D9SF54;Q13813 Q13813 1241 1252 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 5.1099E-29 170.52 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1.106 1.1135 17.45 8 Median 1.0537 1.0331 35.85 2 1 Median 1.3007 1.2423 2.7927 2 1 Median 0.8572 0.99417 4.6061 2 1 Median 1.106 1.0795 15.798 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84044000 37473000 46571000 13735000 6417000 7318100 26479000 9951300 16528000 40526000 19572000 20954000 3303500 1533000 1770500 0 0 0 0 0 0 3888 264;2838 4044 20101;20102;20103;20104;20105;20106;20107;20108;20109 20800;20801;20802;20803;20804;20805;20806;20807;20808 20803 9 DADPILISLR GPEAALEAEEWVSGRDADPILISLREAYVP WVSGRDADPILISLREAYVPSKQRDLKISR R D A L R E 1 1 0 2 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1111.6237 Q9BR76 Q9BR76 384 393 CORO1B Coronin-1B yes yes 2 0.0015287 64.711 By MS/MS By matching By MS/MS By matching By matching By matching 4 1 1 1 1 1 0.90777 0.87397 17.32 9 Median 0.8887 0.88962 11.878 4 0 Median 0.96743 0.81829 NaN 1 0 Median 0.86146 0.86504 NaN 1 0 Median 1.0587 0.91884 NaN 1 0 Median 0.60394 0.60821 NaN 1 0 Median 1.2394 1.0953 NaN 1 0 Median 25020000 13122000 11898000 12024000 6712000 5311600 1451300 571260 880010 10369000 5249000 5120100 633980 294710 339270 353450 209380 144080 188430 85558 102870 3889 3792 4045 20110;20111;20112;20113;20114;20115;20116;20117;20118 20809;20810;20811;20812;20813;20814 20814 6 DADSITLFDVQQK CDEIFYAGTGNLLLRDADSITLFDVQQKRT LRDADSITLFDVQQKRTLASVKISKVKYVI R D A Q K R 1 0 0 3 0 2 0 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1478.7253 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3 P53621 468 480 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0004024 85.377 By MS/MS 1 0.92224 0.90334 NaN 1 Median 0.92224 0.90334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4338900 2355400 1983500 4338900 2355400 1983500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3890 2473 4046 20119 20815 20815 1 DADSQNPDAPEGK SNLENSTYDLYTIPKDADSQNPDAPEGKRS PKDADSQNPDAPEGKRSSGLTAVWVARNRF K D A G K R 2 0 1 3 0 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 13 0 1342.5637 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 399 411 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0012104 57.532 By matching By MS/MS 1 1 0.75857 0.71709 0.19069 2 Median 0.70661 0.71806 NaN 1 0 Median 0.81436 0.71612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2298900 1245800 1053200 187020 97563 89453 2111900 1148200 963710 0 0 0 0 0 0 0 0 0 0 0 0 3891 2473 4047 20120;20121 20816;20817 20817 2 DADSQNPDAPEGKR SNLENSTYDLYTIPKDADSQNPDAPEGKRS KDADSQNPDAPEGKRSSGLTAVWVARNRFA K D A K R S 2 1 1 3 0 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 14 1 1498.6648 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 399 412 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 0.003215 31.827 By matching By MS/MS 1 1 0.75676 0.7541 9.4283 2 Median 0.78131 0.80608 NaN 1 0 Median 0.73299 0.70546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 742440 394200 348240 231030 116570 114460 511410 277630 233780 0 0 0 0 0 0 0 0 0 0 0 0 3892 2473 4048 20122;20123 20818 20818 1 DADSSISVLEIHSQK MKTGELEKETAPLRKDADSSISVLEIHSQK DADSSISVLEIHSQKAQIEEPDPPEMETSL K D A Q K A 1 0 0 2 0 1 1 0 1 2 1 1 0 0 0 4 0 0 0 1 0 0 15 0 1627.8053 Q96T23;H0YER1;H0YCN2 Q96T23 512 526 RSF1 Remodeling and spacing factor 1 yes no 2;3 3.2374E-11 128.01 By matching By matching By MS/MS By matching 1 2 3 2 1.0403 1.0054 23.245 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89931 0.99982 NaN 1 0 Median 1.0538 0.98786 3.2834 2 0 Median 1.028 1.0767 31.019 3 0 Median 0.9213 0.80031 35.874 2 0 Median 52568000 27675000 24893000 0 0 0 0 0 0 1651700 764200 887520 6675300 3591000 3084300 42506000 22370000 20135000 1735000 949120 785850 3893 3740 4049 20124;20125;20126;20127;20128;20129;20130;20131 20819;20820;20821;20822 20820 4 DADVEDEDTEEAK RITFPVRSGKGKKRKDADVEDEDTEEAKTL RKDADVEDEDTEEAKTLIVEPHVIPNRGPY K D A A K T 2 0 0 4 0 0 4 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 13 0 1464.574 O60306 O60306 763 775 AQR Intron-binding protein aquarius yes yes 2 0.001095 59.426 By MS/MS By matching 1 1 1.0359 1.0175 38.537 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72146 0.77483 NaN 1 0 Median 1.4874 1.3363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1991500 1097200 894380 0 0 0 0 0 0 1717600 947110 770460 273960 150050 123910 0 0 0 0 0 0 3894 1611 4050 20132;20133 20823;20824 20823 2 DADVQNFVSFISK AMMRKATASRLVTQRDADVQNFVSFISKDS QRDADVQNFVSFISKDSIQKSLQMYLERLK R D A S K D 1 0 1 2 0 1 0 0 0 1 0 1 0 2 0 2 0 0 0 2 0 0 13 0 1468.7198 P42126;Q96DC0;H3BS70 P42126 271 283 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 9.0305E-07 100.72 By MS/MS By matching By MS/MS 1 1 1 0.92714 0.84849 3.436 3 Median 0.88978 0.82294 NaN 1 0 Median 0.97155 0.84849 NaN 1 0 Median 0.92714 0.88136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37983000 19643000 18340000 34265000 17787000 16477000 60527 33536 26991 3657700 1822200 1835400 0 0 0 0 0 0 0 0 0 3895 2305 4051 20134;20135;20136 20825;20826;20827;20828;20829 20826 5 DAEALSQRLEEK GTIESLEEAKKKLLKDAEALSQRLEEKALA LLKDAEALSQRLEEKALAYDKLEKTKNRLQ K D A E K A 2 1 0 1 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1387.6943 P35580 P35580 1400 1411 MYH10 Myosin-10 yes yes 2 0.0068478 80.688 By MS/MS 1 1.1077 1.1193 NaN 1 Median 1.1077 1.1193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4264100 1821500 2442600 4264100 1821500 2442600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3896 2245 4052 20137 20830 20830 1 DAEAWFNEK NMRSQYEQLAEQNRKDAEAWFNEKSKELTT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI K D A E K S 2 0 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1108.4825 P13645;CON__P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0;CON__Q7Z3Y8 P13645 335 343 KRT10;KRT28;KRT27;KRT25 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25 yes no 2 6.1946E-12 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 10 10 4 4 0.024695 0.018437 122.87 37 Median 0.028019 0.026026 133.26 7 7 Median 0.0099906 0.0084321 77.361 4 4 Median 0.038979 0.041923 115.61 10 10 Median 0.016365 0.013742 107.38 10 10 Median 0.014916 0.01541 107.57 2 2 Median 0.010543 0.0088475 55.742 4 4 Median 639770000 612360000 27400000 129330000 127710000 1624600 44725000 44148000 576680 199750000 178360000 21395000 75706000 73377000 2328400 164890000 163650000 1241000 25364000 25129000 234760 + 3897 756 4053 20138;20139;20140;20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156;20157;20158;20159;20160;20161;20162;20163;20164;20165;20166;20167;20168;20169;20170;20171;20172;20173;20174;20175;20176;20177 20831;20832;20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844;20845;20846;20847;20848;20849;20850;20851;20852;20853;20854;20855;20856;20857;20858;20859;20860;20861;20862;20863;20864;20865;20866;20867;20868;20869;20870;20871;20872;20873;20874;20875 20854 45 DAEAWFTSR DMRSQYEVMAEQNRKDAEAWFTSRTEELNR AEQNRKDAEAWFTSRTEELNREVAGHTEQL K D A S R T 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 9 0 1081.4829 CON__P08727;P08727;K7EMS3 CON__P08727 266 274 KRT19 Keratin, type I cytoskeletal 19 yes no 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 3 1 1.1021 1.1493 17.455 10 Median 0.99673 0.99497 NaN 1 0 Median 1.8643 1.627 NaN 1 0 Median 0.9707 1.0206 17.67 2 0 Median 1.447 1.2663 3.1857 2 0 Median 1.1295 1.1422 9.0742 3 0 Plateau 1.5149 1.3019 NaN 1 0 Median 102250000 47111000 55136000 15889000 7599500 8289300 9041000 3270200 5770800 50752000 24417000 26335000 2320800 959990 1360900 18654000 8623300 10031000 5590200 2241200 3348900 + 3898 752 4054 20178;20179;20180;20181;20182;20183;20184;20185;20186;20187 20876;20877;20878;20879;20880;20881;20882;20883;20884;20885;20886 20877 11 DAEDAIYGR HGLVPFAFVRFEDPRDAEDAIYGRNGYDYG RFEDPRDAEDAIYGRNGYDYGQCRLRVEFP R D A G R N 2 1 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1008.4512 Q13242;H0YIB4;S4R3G0 Q13242 64 72 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00078953 97.798 By MS/MS By MS/MS By MS/MS 1 1 2 1.1214 0.92229 20.326 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2204 1.171 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77329 0.76529 NaN 1 1 Median 1.1589 0.92229 18.113 2 0 Median 16398000 7444500 8953400 0 0 0 0 0 0 6157800 2758600 3399200 0 0 0 3513800 1921700 1592000 6726400 2764200 3962200 3899 2799 4055 20188;20189;20190;20191 20887;20888;20889;20890 20890 4 DAEDALHNLDR RRPRGFAYVQFEDVRDAEDALHNLDRKWIC EDVRDAEDALHNLDRKWICGRQIEIQFAQG R D A D R K 2 1 1 3 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1267.5793 Q5JRI1;O75494 Q5JRI1 63 73 SRSF10 Serine/arginine-rich splicing factor 10 yes no 2;3 0.0022363 60.518 By MS/MS By MS/MS 2 5 1.1323 0.9477 30.241 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2142 1.189 2.0172 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1229 0.90681 35.536 5 0 Median 47739000 21622000 26116000 0 0 0 0 0 0 6936000 3053700 3882300 0 0 0 0 0 0 40803000 18568000 22234000 3900 1679 4056 20192;20193;20194;20195;20196;20197;20198 20891;20892;20893 20892 3 DAEDALHNLDRK RRPRGFAYVQFEDVRDAEDALHNLDRKWIC DVRDAEDALHNLDRKWICGRQIEIQFAQGD R D A R K W 2 1 1 3 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1395.6743 Q5JRI1;O75494 Q5JRI1 63 74 SRSF10 Serine/arginine-rich splicing factor 10 yes no 3 1.054E-06 115.14 By matching By matching By MS/MS 1 1 4 1.2072 1.0611 18.863 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.027 0.90296 NaN 1 0 Median 0.94616 1.0229 NaN 1 0 Median 1.326 1.1831 19.524 4 0 Median 13389000 5934200 7455200 0 0 0 0 0 0 0 0 0 907860 488250 419610 2953800 1419300 1534600 9527600 4026700 5501000 3901 1679 4057 20199;20200;20201;20202;20203;20204 20894;20895;20896 20896 3 DAEDAMDAMDGAVLDGR KESRGFAFVRFHDKRDAEDAMDAMDGAVLD EDAMDAMDGAVLDGRELRVQMARYGRPPDS R D A G R E 4 1 0 5 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 17 0 1750.7138 J3QL05;J3KP15;Q01130 J3QL05 67 83 SRSF2 Serine/arginine-rich splicing factor 2 yes no 2;3 1.3712E-13 132.59 By MS/MS By matching By MS/MS By MS/MS By MS/MS 7 2 10 5 7 0.99022 0.94965 11.151 31 Median 0.98877 0.93626 14.518 7 0 Median 1.0866 0.92549 3.0577 2 0 Median 0.94284 0.91895 5.8498 10 1 Median 1.1826 0.98543 2.3172 5 0 Median 0.95702 1.0261 17.089 7 0 Median NaN NaN NaN 0 0 Median 154720000 76721000 77997000 38971000 18622000 20349000 2599400 1204200 1395200 91637000 46313000 45324000 5746800 2562000 3184800 15763000 8019600 7743600 0 0 0 3902 1307 4058;4059;4060 20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221;20222;20223;20224;20225;20226;20227;20228;20229;20230;20231;20232;20233;20234;20235 20897;20898;20899;20900;20901;20902;20903;20904;20905;20906;20907;20908;20909;20910;20911;20912;20913;20914;20915;20916;20917;20918;20919;20920;20921;20922;20923;20924 20909 429;430 28 DAEDAVYGR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R D A G R D 2 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 9 0 994.43559 J3KTL2;Q07955 J3KTL2 66 74 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00034235 136.11 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1.0509 0.9953 14.258 7 Median 0.77689 0.75412 NaN 1 0 Median 1.002 0.84384 NaN 1 0 Median 1.0777 1.0657 NaN 1 0 Median 1.3343 1.1129 NaN 1 0 Median 0.98987 1.0429 NaN 1 0 Median 1.1351 0.93702 8.5332 2 0 Median 20936000 10163000 10773000 1617200 812350 804860 1978100 992270 985830 5981800 3464900 2516900 4355200 1842500 2512700 4091000 1775400 2315500 2912500 1275700 1636800 3903 1337 4061 20236;20237;20238;20239;20240;20241;20242 20925;20926;20927;20928;20929;20930 20928 6 DAEDVDLNHYR EHELPVDMETINLDRDAEDVDLNHYRIGKI NLDRDAEDVDLNHYRIGKIEGFETLCLRQN R D A Y R I 1 1 1 3 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1345.5899 H7C003;Q15435;C9J177;C9JD73;B5MBZ8;H7C118 H7C003 58 68 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.00041373 101.11 By MS/MS 1 0.28484 0.24818 NaN 1 Median NaN NaN NaN 0 0 Median 0.28484 0.24818 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6311000 5350100 960870 0 0 0 6311000 5350100 960870 0 0 0 0 0 0 0 0 0 0 0 0 3904 1254 4062 20243 20931 20931 1 DAEDWFFSK EMRDQYEKMAEKNRKDAEDWFFSKTEELNR AEKNRKDAEDWFFSKTEELNREVATNSELV K D A S K T 1 0 0 2 0 0 1 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 9 0 1143.4873 CON__Q04695;Q04695;F5GWP8;K7ESE1 CON__Q04695 270 278 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.029283 36.557 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 3 2 2 2 0.77654 0.68382 41.98 12 Median 0.96669 0.95071 NaN 1 0 Median 1.0599 0.92219 18.743 2 0 Median 0.61496 0.59764 70.36 3 0 Median 0.77654 0.67545 7.648 2 0 Median 1.011 1.0024 60.001 2 0 Median 0.65484 0.5532 10.804 2 0 Median 22153000 9445700 12707000 243950 110760 133190 1055500 515060 540490 14073000 5501000 8572500 2127800 1177900 949920 3039900 1188800 1851100 1612100 952180 659890 + 3905 768 4063 20244;20245;20246;20247;20248;20249;20250;20251;20252;20253;20254;20255 20932;20933;20934 20933 3 DAEEDMPQR TLAHLKESQPAIWNRDAEEDMPQRVVLLQR PAIWNRDAEEDMPQRVVLLQRSQTTTERDS R D A Q R V 1 1 0 2 0 1 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 9 0 1089.4397 Q14676 Q14676 430 438 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0068944 53.166 By MS/MS 1 0.68377 0.7591 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68377 0.7591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2084800 1223000 861840 0 0 0 0 0 0 2084800 1223000 861840 0 0 0 0 0 0 0 0 0 3906 2887 4064 20256 20935;20936 20935 2 DAEELEKWIQEK RQKLEDSYRFQFFQRDAEELEKWIQEKLQI FQRDAEELEKWIQEKLQIASDENYKDPTNL R D A E K L 1 0 0 1 0 1 4 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 12 1 1516.7409 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 52 63 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 5.3709E-06 117.31 By MS/MS 1 0.88169 1.0183 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88169 1.0183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5951800 3211200 2740600 0 0 0 0 0 0 5951800 3211200 2740600 0 0 0 0 0 0 0 0 0 3907 264;2838 4065 20257 20937 20937 1 DAEEWFFTK EMRDQYEKMAEKNRKDAEEWFFTKTEELNR AEKNRKDAEEWFFTKTEELNREVATNSELV K D A T K T 1 0 0 1 0 0 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 9 0 1171.5186 P02533;CON__P02533;CON__Q6IFX2 P02533 301 309 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.030308 49.418 By MS/MS 1 0.020433 0.020374 NaN 1 Median 0.020433 0.020374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6299800 6246800 52935 6299800 6246800 52935 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3908 739;787 4066 20258 20938 20938 1 DAEEWFFTKTEELNR EMRDQYEKMAEKNRKDAEEWFFTKTEELNR DAEEWFFTKTEELNREVATNSELVQSGKSE K D A N R E 1 1 1 1 0 0 4 0 0 0 1 1 0 2 0 0 2 1 0 0 0 0 15 1 1913.8796 P02533;CON__P02533;CON__Q6IFX2 P02533 301 315 KRT14 Keratin, type I cytoskeletal 14 no no 2 9.165E-08 105.32 By MS/MS 1 0.34235 0.3498 NaN 1 Median 0.34235 0.3498 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2174600 1925100 249560 2174600 1925100 249560 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3909 739;787 4067 20259 20939 20939 1 DAEFYEHR KFVLAHGGRRVAILRDAEFYEHRKEERCSR RRVAILRDAEFYEHRKEERCSRVWGTTCTK R D A H R K 1 1 0 1 0 0 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 8 0 1065.4516 O95340 O95340 330 337 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.0035841 87.323 By MS/MS By MS/MS 1 1 1.2036 1.1216 0.69921 2 Median 1.1247 1.1272 NaN 1 0 Median 1.2882 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6990000 3059000 3931000 2496800 1169300 1327500 4493200 1889700 2603500 0 0 0 0 0 0 0 0 0 0 0 0 3910 1765 4068 20260;20261 20940;20941;20942 20941 3 DAEGILEDLQSYR ESEKEIYNQVNVVLKDAEGILEDLQSYRGA LKDAEGILEDLQSYRGAGHEIREAIQHPAD K D A Y R G 1 1 0 2 0 1 2 1 0 1 2 0 0 0 0 1 0 0 1 0 0 0 13 0 1507.7155 Q9NUQ9;E5RI16;E5RJL8;E5RJE1;E5RIR8;E5RK61;E5RFS4;E5RHU5;E5RGI7 Q9NUQ9 45 57 FAM49B Protein FAM49B yes no 2 0.00091964 62.303 By MS/MS By MS/MS By MS/MS 1 1 1 0.92443 0.88369 14.086 3 Median 0.80469 0.78101 NaN 1 0 Median 1.2411 1.0344 NaN 1 0 Median 0.92443 0.88369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7639000 3507600 4131300 1443700 773670 670070 5090800 2224800 2866000 1104400 509180 595260 0 0 0 0 0 0 0 0 0 3911 4120 4069 20262;20263;20264 20943;20944;20945 20943 3 DAELIQAGHMDSR KVIKETQERYRRLKRDAELIQAGHMDSRLD KRDAELIQAGHMDSRLDELCNDIATKKKLE R D A S R L 2 1 0 2 0 1 1 1 1 1 1 0 1 0 0 1 0 0 0 0 0 0 13 0 1441.662 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;H7C2P4 H7C128 119 131 BRD8 Bromodomain-containing protein 8 yes no 2;3 0.00022532 66.595 By MS/MS By MS/MS 2 1 1.1113 1.0484 9.2315 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0237 1.1247 11.724 2 0 Median 1.2309 1.0484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8711600 4029800 4681800 0 0 0 0 0 0 6858000 3092000 3766000 1853600 937750 915830 0 0 0 0 0 0 3912 620 4070 20265;20266;20267 20946;20947 20947 2 DAELVDKSETDLRR KKFGGPLERLDAIARDAELVDKSETDLRRL RDAELVDKSETDLRRLGELVHNGCIKALKD R D A R R L 1 2 0 3 0 0 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 14 2 1645.8271 O14646 O14646 1154 1167 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 4.0722E-05 81.494 By MS/MS 1 1.2903 1.4161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2903 1.4161 NaN 1 0 Median NaN NaN NaN 0 0 Median 7238300 2970300 4268000 0 0 0 0 0 0 0 0 0 0 0 0 7238300 2970300 4268000 0 0 0 3913 1486 4071 20268 20948;20949 20948 2 DAEMPATEKDLAEDAPWKK QSAAGAAPGGGVDTRDAEMPATEKDLAEDA PATEKDLAEDAPWKKIQQNTFTRWCNEHLK R D A K K I 4 0 0 3 0 0 3 0 0 0 1 3 1 0 2 0 1 1 0 0 0 0 19 2 2144.0096 P21333;F8WE98 P21333 25 43 FLNA Filamin-A yes no 3 4.027E-05 42.716 By MS/MS By matching 2 1 0.63987 0.75582 16.65 3 Median 0.66484 0.75607 0.045511 2 0 Median 0.54397 0.56665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23312000 11850000 11462000 20924000 10135000 10789000 2387900 1714500 673400 0 0 0 0 0 0 0 0 0 0 0 0 3914 2088 4072 20269;20270;20271 20950 20950 1 DAESIHQYLLQR QCCENILLNAAWLKRDAESIHQYLLQRKAS LKRDAESIHQYLLQRKASPPTV________ R D A Q R K 1 1 0 1 0 2 1 0 1 1 2 0 0 0 0 1 0 0 1 0 0 0 12 0 1471.7419 E9PLK3;P55786;H0YDG0 E9PLK3 897 908 NPEPPS Puromycin-sensitive aminopeptidase yes no 2;3 5.0602E-22 202.05 By MS/MS By MS/MS 6 4 1.2522 1.1511 42.444 10 Median 1.0077 0.96845 48.358 6 0 Median 1.3739 1.1971 14.6 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122970000 60526000 62446000 106700000 54110000 52593000 16268000 6415200 9852400 0 0 0 0 0 0 0 0 0 0 0 0 3915 960 4073 20272;20273;20274;20275;20276;20277;20278;20279;20280;20281 20951;20952;20953;20954;20955;20956;20957 20951 7 DAETWFLSK EMRDQYEQMAEKNRRDAETWFLSKTEELNK AEKNRRDAETWFLSKTEELNKEVASNSELV R D A S K T 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 9 0 1095.5237 CON__P08779;P08779;K7ENW6 CON__P08779 303 311 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.027065 51.346 By MS/MS By MS/MS By MS/MS 1 2 1 0.062438 0.064572 155.13 4 Median 0.037274 0.037145 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.021305 0.022796 225.45 2 2 Median NaN NaN NaN 0 0 Median 0.12846 0.13607 NaN 1 1 Median NaN NaN NaN 0 0 Median 35385000 34464000 921020 6042600 5905600 137010 0 0 0 27491000 26876000 614850 0 0 0 1851300 1682100 169150 0 0 0 + 3916 754 4074 20282;20283;20284;20285 20958;20959;20960;20961 20958 4 DAFADAVQR GPSQPPGGGGPGIRKDAFADAVQRARQIAA GPGIRKDAFADAVQRARQIAAKIGGDAATT K D A Q R A 3 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 9 0 991.47231 Q92945;A0A087WTP3;M0R0I5 Q92945 72 80 KHSRP Far upstream element-binding protein 2 yes no 2 0.00034134 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 3 1 3 1.0317 1.1162 10.343 11 Linear 1.0459 0.98947 NaN 1 0 Median 1.1072 0.95684 NaN 1 1 Median 0.96915 1.0217 14.216 3 1 Plateau 1.1374 0.98043 14.956 3 0 Plateau 0.93658 0.93923 NaN 1 0 Median 1.1213 0.93712 1.05 2 2 Median 168370000 81635000 86739000 14707000 6152300 8554400 8406400 4257400 4148900 110340000 54935000 55404000 23582000 10782000 12800000 4152700 2193500 1959200 7187400 3315000 3872500 3917 3568 4075 20286;20287;20288;20289;20290;20291;20292;20293;20294;20295;20296;20297;20298 20962;20963;20964;20965;20966;20967;20968;20969;20970;20971;20972;20973 20965 12 DAFDRNPELQNLLLDDFFK RGGCIIRSVFLGKIKDAFDRNPELQNLLLD RNPELQNLLLDDFFKSAVENCQDSWRRAVS K D A F K S 1 1 2 4 0 1 1 0 0 0 4 1 0 3 1 0 0 0 0 0 0 0 19 1 2309.1328 P52209 P52209 378 396 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 3 3.6171E-08 69.737 By matching By MS/MS By MS/MS 1 1 2 0.99893 0.96098 17.595 4 Median 0.81262 0.83745 NaN 1 0 Median 1.0707 0.97758 NaN 1 0 Median 1.0753 1.096 21.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13945000 6690400 7254700 114610 62905 51701 4780700 2184400 2596300 9049800 4443100 4606700 0 0 0 0 0 0 0 0 0 3918 2447 4076 20299;20300;20301;20302 20974;20975;20976;20977 20975 4 DAFDTLFDHAPDK EITGNTEALSGRHERDAFDTLFDHAPDKLN ERDAFDTLFDHAPDKLNVVKKTLITFVNKH R D A D K L 2 0 0 4 0 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 0 0 13 0 1490.6678 Q9HBI1;A0A087WZB5;Q9NVD7 Q9NVD7 248 260 PARVB;PARVA Beta-parvin;Alpha-parvin no no 3 0.058252 12.627 By MS/MS 2 0.87989 0.93835 19.437 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87989 0.93835 19.437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2965200 1607000 1358200 0 0 0 0 0 0 2965200 1607000 1358200 0 0 0 0 0 0 0 0 0 3919 4127;4019 4077 20303;20304 20978 20978 1 DAFLGSFLYEYSR FAEDKDVCKNYQEAKDAFLGSFLYEYSRRH AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK K D A S R R 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 2 0 0 2 0 0 0 13 0 1566.7355 CON__P02769 CON__P02769 347 359 yes yes 2 2.3591E-08 125.74 By MS/MS By MS/MS By MS/MS 2 2 2 0.020927 0.019388 180.29 6 Median 0.0065284 0.0062678 255.8 2 2 Median 0.005075 0.0043584 120.52 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.055906 0.057899 64.168 2 2 Median NaN NaN NaN 0 0 Median 136950000 136490000 456580 113640000 113460000 184500 20464000 20373000 90670 0 0 0 0 0 0 2840700 2659300 181400 0 0 0 + 3920 746 4078 20305;20306;20307;20308;20309;20310 20979;20980;20981;20982;20983;20984;20985;20986 20979 8 DAFLTLAR VDPDPLLSCDLMDGRDAFLTLARDKHWEFS CDLMDGRDAFLTLARDKHWEFSSLRRSKWS R D A A R D 2 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 8 0 905.49707 Q92793;Q09472 Q92793 1665 1672 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 2 0.0058736 73.616 By matching By matching By MS/MS By matching 2 2 2 1 1.1161 0.97733 22.915 7 Median 1.0802 1.0582 18.455 2 0 Median 1.0079 0.88562 37.108 2 0 Median 0.88454 0.9867 33.335 2 0 Median 1.1161 0.97733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8304800 3814900 4489900 1406500 585360 821130 682780 322890 359890 5939200 2790100 3149100 276390 116590 159800 0 0 0 0 0 0 3921 3557;2748 4079 20311;20312;20313;20314;20315;20316;20317 20987;20988 20988 2 DAFQNAYLELGGLGER ILLHGKEQPLDEELKDAFQNAYLELGGLGE AFQNAYLELGGLGERVLGFCHLFLPDEQFP K D A E R V 2 1 1 1 0 1 2 3 0 0 3 0 0 1 0 0 0 0 1 0 0 0 16 0 1751.8479 P05023 P05023 536 551 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.00013392 54.7 By MS/MS By MS/MS 2 4 1.1455 1.0756 11.98 6 Median 1.1201 1.1299 3.9378 2 0 Median 1.1565 1.0006 13.764 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9013800 4052800 4961100 3557500 1643100 1914300 5456400 2409600 3046700 0 0 0 0 0 0 0 0 0 0 0 0 3922 1857 4080 20318;20319;20320;20321;20322;20323 20989;20990;20991;20992;20993 20989 5 DAFSLAEGLR LELLTIFAWEQGCKKDAFSLAEGLRTVLGL QGCKKDAFSLAEGLRTVLGLIQQHQHLCVF K D A L R T 2 1 0 1 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1077.5455 Q9Y6K5 Q9Y6K5 244 253 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 0.0034408 56.729 By MS/MS By matching By matching 1 1 1 1.2116 1.0694 18.548 3 Median 1.0464 1.021 NaN 1 0 Median 1.2116 1.0694 NaN 1 0 Median 1.354 1.4372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4602500 2208700 2393800 2925300 1462400 1462900 906940 432730 474200 770260 313590 456670 0 0 0 0 0 0 0 0 0 3923 4495 4081 20324;20325;20326 20994 20994 1 DAFTWNMNEK VPIRLDMEIDGQKLRDAFTWNMNEKLMTPE GQKLRDAFTWNMNEKLMTPEMFSEILCDDL R D A E K L 1 0 2 1 0 0 1 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 10 0 1254.5339 G5E975;Q12824;A0A0G2JRV3;C9JTA6 Q12824 202 211 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 0.00094065 69.954 By MS/MS By matching By matching By matching 2 1 1 1 1.0258 0.99842 14.717 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98447 0.98744 1.5635 2 0 Median 1.2915 1.0795 NaN 1 0 Median 0.90065 0.89243 NaN 1 0 Median 1.5299 1.3184 NaN 1 0 Median 20203000 10120000 10083000 0 0 0 0 0 0 18920000 9506800 9412800 570270 248260 322010 615570 321820 293750 97233 42772 54461 3924 1128;2761 4082 20327;20328;20329;20330;20331 20995;20996;20997 20996 3 DAFVAIVQSVK DVEHTIKKEMSGDVRDAFVAIVQSVKNKPL GDVRDAFVAIVQSVKNKPLFFADKLYKSMK R D A V K N 2 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 3 0 0 11 0 1175.655 E5RK69;P08133;E7EMC6 P08133 588 598 ANXA6 Annexin;Annexin A6 no no 2 0.00022378 84.213 By MS/MS By MS/MS 4 1 1.0443 0.97253 12.499 3 Median 1.0443 0.97253 12.499 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37829000 20352000 17476000 37829000 20352000 17476000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3925 1898;854 4083 20332;20333;20334;20335;20336 20998;20999;21000;21001;21002 21001 5 DAFVPDGIK D A I K 1 0 0 2 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 9 0 960.49165 REV__A0A2R8YCU7 yes no 2 0.053179 30.167 By MS/MS 1 0.74765 0.70213 NaN 1 Median 0.74765 0.70213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6679000 3393200 3285800 6679000 3393200 3285800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 3926 4513 4084 20337 21003 21003 1 DAFVYAIK MPATYCEIDLDKEKRDAFVYAIKNHYWYQM DLDKEKRDAFVYAIKNHYWYQMYIDDLPIW R D A I K N 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 925.49092 Q9HD45;Q5TB53 Q9HD45 118 125 TM9SF3 Transmembrane 9 superfamily member 3 yes no 2 0.0094539 60.788 By MS/MS By MS/MS 2 2 1.1554 1.0808 7.3583 4 Median 1.075 1.0498 5.9978 2 0 Median 1.2895 1.1316 8.3715 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19627000 9225000 10402000 9985800 5097500 4888300 9641100 4127400 5513700 0 0 0 0 0 0 0 0 0 0 0 0 3927 4037 4085 20338;20339;20340;20341 21004;21005;21006;21007 21006 4 DAGEGGLSLAIEGPSK HGVVNKPATFTVNTKDAGEGGLSLAIEGPS AGEGGLSLAIEGPSKAEISCTDNQDGTCSV K D A S K A 2 0 0 1 0 0 2 4 0 1 2 1 0 0 1 2 0 0 0 0 0 0 16 0 1499.7468 P21333;Q60FE5;A0A087WWY3 P21333 1892 1907 FLNA Filamin-A no no 2 2.1098E-10 139.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1 0.86951 0.82176 39.25 9 Median 0.94655 0.92908 34.412 3 1 Plateau 0.80585 0.71504 1.7326 3 0 Median 0.96298 1.0622 NaN 1 0 Median 0.87974 0.82176 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.43 2.0969 NaN 1 0 Median 151530000 78421000 73108000 80228000 41105000 39122000 56652000 30259000 26392000 13538000 6521800 7016100 749500 398390 351100 0 0 0 362930 136590 226350 3928 2088;3120 4086 20342;20343;20344;20345;20346;20347;20348;20349;20350 21008;21009;21010;21011;21012;21013;21014;21015;21016;21017;21018;21019;21020;21021;21022;21023;21024;21025 21016 18 DAGEGGLSLAVEGPSK HGMVNKPATFTIVTKDAGEGGLSLAVEGPS AGEGGLSLAVEGPSKAEITCKDNKDGTCTV K D A S K A 2 0 0 1 0 0 2 4 0 0 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1485.7311 Q14315 Q14315 1886 1901 FLNC Filamin-C yes yes 2 1.654E-10 126.76 By MS/MS By MS/MS By MS/MS 3 1 1 0.98854 0.95498 17.032 5 Median 1.154 1.1558 10.478 3 3 Plateau 0.923 0.8223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86082 0.80648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51727000 25909000 25817000 29811000 14001000 15809000 21097000 11468000 9628900 0 0 0 819920 440350 379570 0 0 0 0 0 0 3929 2871 4087 20351;20352;20353;20354;20355 21026;21027;21028;21029;21030;21031;21032;21033;21034 21026 9 DAGEGLLAVQITDPEGKPK GVPASLPVEFTIDAKDAGEGLLAVQITDPE GLLAVQITDPEGKPKKTHIQDNHDGTYTVA K D A P K K 2 0 0 2 0 1 2 3 0 1 2 2 0 0 2 0 1 0 0 1 0 0 19 1 1937.0106 P21333;Q60FE5;A0A087WWY3 P21333 1574 1592 FLNA Filamin-A no no 2;3 5.75E-25 180.54 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 3 1 1 0.77454 0.79836 25.688 13 Median 0.83317 0.84759 10.458 4 0 Median 0.70266 0.6804 6.1858 4 0 Median 0.79691 0.92305 3.3203 3 0 Median 0.66923 0.62227 NaN 1 0 Median 1.5504 1.6484 NaN 1 0 Median NaN NaN NaN 0 0 Median 294540000 163310000 131230000 176730000 96269000 80460000 90350000 52102000 38248000 24581000 13349000 11232000 291670 160240 131430 2583400 1428700 1154700 0 0 0 3930 2088;3120 4088 20356;20357;20358;20359;20360;20361;20362;20363;20364;20365;20366;20367;20368 21035;21036;21037;21038;21039;21040;21041;21042;21043;21044;21045;21046;21047;21048;21049;21050;21051;21052;21053;21054 21042 20 DAGEGLLAVQITDQEGKPK GVPASLPVDFAIDARDAGEGLLAVQITDQE GLLAVQITDQEGKPKRAIVHDNKDGTYAVT R D A P K R 2 0 0 2 0 2 2 3 0 1 2 2 0 0 1 0 1 0 0 1 0 0 19 1 1968.0164 O75369;E7EN95 O75369 1546 1564 FLNB Filamin-B yes no 2;3 1.1355E-37 201.48 By MS/MS By MS/MS By MS/MS 3 3 2 0.74621 0.7981 18.497 8 Median 0.76937 0.82038 9.6893 3 0 Median 0.65601 0.62439 24.24 3 0 Median 0.705 0.81466 6.7965 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 139040000 75026000 64014000 86225000 46368000 39857000 38069000 20129000 17940000 14746000 8529100 6216700 0 0 0 0 0 0 0 0 0 3931 1664 4089 20369;20370;20371;20372;20373;20374;20375;20376 21055;21056;21057;21058;21059;21060;21061;21062;21063;21064;21065 21057 11 DAGEGLLAVQITDQEGKPKR GVPASLPVDFAIDARDAGEGLLAVQITDQE LLAVQITDQEGKPKRAIVHDNKDGTYAVTY R D A K R A 2 1 0 2 0 2 2 3 0 1 2 2 0 0 1 0 1 0 0 1 0 0 20 2 2124.1175 O75369;E7EN95 O75369 1546 1565 FLNB Filamin-B yes no 3 0.00051022 42.309 By MS/MS 1 0.88831 0.93901 NaN 1 Median 0.88831 0.93901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7618400 4142300 3476000 7618400 4142300 3476000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3932 1664 4090 20377 21066 21066 0 DAGEGLLTVQILDPEGKPK GIPASLPVEFTIDARDAGEGLLTVQILDPE GLLTVQILDPEGKPKKANIRDNGDGTYTVS R D A P K K 1 0 0 2 0 1 2 3 0 1 3 2 0 0 2 0 1 0 0 1 0 0 19 1 1979.0575 Q14315 Q14315 1568 1586 FLNC Filamin-C yes yes 3 0.04117 12.663 By matching By MS/MS 1 2 0.84531 0.82627 18.542 3 Median 0.95912 1.0447 NaN 1 0 Median 0.80185 0.77369 9.2974 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11573000 5981100 5592100 6160200 3062400 3097800 5413000 2918700 2494300 0 0 0 0 0 0 0 0 0 0 0 0 3933 2871 4091 20378;20379;20380 21067 21067 1 DAGGMVIDMK AKQQKRPFAYHKLLKDAGGMVIDMKWNPTV HKLLKDAGGMVIDMKWNPTVPSMVAVCLAD K D A M K W 1 0 0 2 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 1 0 0 10 0 1035.4729 A0A494C1F2;P35658;A0A494BZU9;A0A494C0J0 A0A494C1F2 147 156 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.0059454 64.711 By MS/MS 1 1.6057 1.7812 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6057 1.7812 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7711200 3192800 4518400 0 0 0 0 0 0 7711200 3192800 4518400 0 0 0 0 0 0 0 0 0 3934 467 4092 20381 21068 21068 1 DAGIEPGPDTYLALLNAYAEK AGDMENAENILTVMRDAGIEPGPDTYLALL GPDTYLALLNAYAEKGDIDHVKQTLEKVEK R D A E K G 4 0 1 2 0 0 2 2 0 1 3 1 0 0 2 0 1 0 2 0 0 0 21 0 2220.095 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 260 280 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 0.041393 19.578 By MS/MS By matching By matching 2 1 2 0.79789 0.86332 12.24 5 Median 0.71027 0.7192 2.0003 2 0 Median 1.0494 0.93443 NaN 1 0 Median 0.80895 0.87291 1.5621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3188500 1712900 1475600 1992000 1106800 885200 570770 272400 298360 625720 333730 291990 0 0 0 0 0 0 0 0 0 3935 2315 4093 20382;20383;20384;20385;20386 21069;21070 21069 2 DAGMQLQGYR FLPKPTWGNHTPIFRDAGMQLQGYRYYDPK TPIFRDAGMQLQGYRYYDPKTCGFDFTGAV R D A Y R Y 1 1 0 1 0 2 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1137.5237 P00505 P00505 171 180 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 5.0495E-05 136.16 By MS/MS By MS/MS By MS/MS 2 3 2 1.116 1.1778 12.384 7 Median 1.0833 1.0884 1.0802 2 0 Median 1.3756 1.1975 20.225 3 0 Median 1.1174 1.1973 2.3257 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100960000 44917000 56038000 44609000 20996000 23613000 43047000 17969000 25078000 13300000 5953100 7346600 0 0 0 0 0 0 0 0 0 3936 1823 4094;4095 20387;20388;20389;20390;20391;20392;20393 21071;21072;21073;21074;21075;21076;21077;21078;21079 21076 590 9 DAGNFDQNKLEEEMR EKKKDKDDKEDEKEKDAGNFDQNKLEEEMR DAGNFDQNKLEEEMRKRKERVEKWREEQRK K D A M R K 1 1 2 2 0 1 3 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 15 1 1794.7843 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 147 161 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.00010743 53.995 By MS/MS By matching 1 1 1.0671 1.1133 36.475 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2723 1.4408 NaN 1 0 Median 0.89509 0.86019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5361900 2238300 3123600 0 0 0 0 0 0 4657600 1824400 2833200 704300 413950 290350 0 0 0 0 0 0 3937 3216 4096 20394;20395 21080 21080 1 DAGQISGLNVLR TVPAYFNDSQRQATKDAGQISGLNVLRVIN ATKDAGQISGLNVLRVINEPTAAALAYGLD K D A L R V 1 1 1 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1241.6728 P38646 P38646 207 218 HSPA9 Stress-70 protein, mitochondrial yes yes 2 1.5169E-10 136.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 2 1 1.2131 1.1088 40.578 11 Median 1.0296 1.0348 53.825 3 1 Median 0.87367 0.75454 63.318 2 1 Median 0.83074 0.83255 NaN 1 1 Median 1.2388 1.0627 6.2603 2 0 Median 1.4489 1.4674 4.6056 2 1 Median 1.3601 1.1154 NaN 1 0 Median 334550000 166050000 168500000 194890000 98724000 96165000 60365000 27056000 33309000 59901000 32551000 27350000 5404800 2308000 3096900 13787000 5327900 8459100 203350 81723 121630 3938 2277 4097 20396;20397;20398;20399;20400;20401;20402;20403;20404;20405;20406 21081;21082;21083;21084;21085;21086;21087;21088;21089;21090;21091;21092;21093;21094 21081 14 DAGTDKNPPETAPVEVVEK AAEEEAGSEQKRDRKDAGTDKNPPETAPVE DKNPPETAPVEVVEKKPAPEKNSKSKRGRS K D A E K K 2 0 1 2 0 0 3 1 0 0 0 2 0 0 3 0 2 0 0 3 0 0 19 1 1994.9797 Q96T58 Q96T58 2047 2065 SPEN Msx2-interacting protein yes yes 3 4.9182E-05 40.614 By MS/MS By MS/MS 1 2 0.74727 0.70345 13.588 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53157 0.60305 NaN 1 0 Median 0.76262 0.7458 8.2674 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13713000 8231200 5482100 0 0 0 0 0 0 7853700 5090200 2763500 5859600 3141000 2718700 0 0 0 0 0 0 3939 3741 4098 20407;20408;20409 21095;21096;21097 21095 3 DAGTIAGLNVLR TVPAYFNDSQRQATKDAGTIAGLNVLRIIN ATKDAGTIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 12 0 1198.667 P11142;E9PKE3;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 160 171 HSPA8 Heat shock cognate 71 kDa protein yes no 2 6.0277E-15 186.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 6 6 7 7 1.115 1.0061 17.844 41 Median 1.149 1.1052 15.002 8 1 Median 1.0124 0.85117 18.049 7 1 Median 1.046 1.0354 25.709 6 1 Median 1.167 1.0053 11.282 6 0 Median 1.0638 1.0902 15.492 7 0 Median 1.1994 0.99362 9.1695 7 0 Median 2537000000 1156800000 1380200000 687050000 301470000 385580000 1251700000 575440000 676220000 372570000 175720000 196860000 53356000 24128000 29228000 146420000 68658000 77767000 25957000 11372000 14585000 3940 1950 4099 20410;20411;20412;20413;20414;20415;20416;20417;20418;20419;20420;20421;20422;20423;20424;20425;20426;20427;20428;20429;20430;20431;20432;20433;20434;20435;20436;20437;20438;20439;20440;20441;20442;20443;20444;20445;20446;20447;20448;20449;20450 21098;21099;21100;21101;21102;21103;21104;21105;21106;21107;21108;21109;21110;21111;21112;21113;21114;21115;21116;21117;21118;21119;21120;21121;21122;21123;21124;21125;21126;21127;21128;21129;21130;21131;21132;21133;21134;21135;21136;21137;21138;21139;21140;21141;21142;21143;21144;21145;21146;21147;21148 21138 51 DAGTIAGLNVMR TVPAYFNDAQRQATKDAGTIAGLNVMRIIN ATKDAGTIAGLNVMRIINEPTAAAIAYGLD K D A M R I 2 1 1 1 0 0 0 2 0 1 1 0 1 0 0 0 1 0 0 1 0 0 12 0 1216.6234 P11021 P11021 186 197 HSPA5 78 kDa glucose-regulated protein yes yes 2 4.4889E-06 103.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 3 3 2 3 1.2355 1.1412 33.908 22 Median 1.2033 1.1352 20.242 6 1 Median 1.2645 1.0904 20.198 5 0 Median 1.0952 1.1491 3.0604 3 0 Median 1.5517 1.3369 18.526 3 0 Median 2.1651 2.2629 16.848 2 1 Median 0.96666 0.83492 67.226 3 0 Median 484490000 209450000 275040000 304320000 133250000 171070000 96393000 40526000 55867000 65120000 29404000 35715000 7479600 2748300 4731400 10127000 3045400 7081400 1051700 477980 573750 3941 1948 4100;4101 20451;20452;20453;20454;20455;20456;20457;20458;20459;20460;20461;20462;20463;20464;20465;20466;20467;20468;20469;20470;20471;20472 21149;21150;21151;21152;21153;21154;21155;21156;21157;21158;21159;21160;21161;21162;21163 21159 724 15 DAGVIAGLNVLR TVPAYFNDSQRQATKDAGVIAGLNVLRIIN ATKDAGVIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1196.6877 A0A0G2JIW1;P0DMV9;P0DMV8;Q53FA3;P34931 A0A0G2JIW1 161 172 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 4.9695E-06 155.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 5 5 8 5 1.3364 1.129 20.546 34 Median 1.4388 1.3671 15.282 6 1 Median 1.2493 1.0798 3.8655 5 0 Median 1.3421 1.3836 14.917 5 0 Median 1.3196 1.1107 3.9626 5 0 Median 1.3721 1.3916 28.818 8 3 Median 1.2627 1.0608 4.9681 5 1 Median 3776800000 1579400000 2197400000 1637700000 656160000 981490000 1583700000 691310000 892430000 160850000 66019000 94828000 44247000 18238000 26009000 278750000 116620000 162140000 71594000 31078000 40517000 3942 278;2229 4102 20473;20474;20475;20476;20477;20478;20479;20480;20481;20482;20483;20484;20485;20486;20487;20488;20489;20490;20491;20492;20493;20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506;20507 21164;21165;21166;21167;21168;21169;21170;21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208 21185 45 DAGVQPEEISYINAHATSTPLGDAAENK PEGEGALRCMAAALKDAGVQPEEISYINAH AHATSTPLGDAAENKAIKHLFKDHAYALAV K D A N K A 5 0 2 2 0 1 3 2 1 2 1 1 0 0 2 2 2 0 1 1 0 0 28 0 2897.3679 Q9NWU1 Q9NWU1 334 361 OXSM 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial yes yes 3 0.0056473 22.399 By MS/MS 2 0.62996 0.65812 4.7138 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62996 0.65812 4.7138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7470600 4158900 3311800 0 0 0 0 0 0 7470600 4158900 3311800 0 0 0 0 0 0 0 0 0 3943 4151 4103 20508;20509 21209 21209 1 DAGYGGISLAVEGPSK EGRTFEMSDFIVDTRDAGYGGISLAVEGPS AGYGGISLAVEGPSKVDIQTEDLEDGTCKV R D A S K V 2 0 0 1 0 0 1 4 0 1 1 1 0 0 1 2 0 0 1 1 0 0 16 0 1519.7518 O75369;E7EN95 O75369 2029 2044 FLNB Filamin-B yes no 2 2.4983E-10 111.12 By MS/MS By MS/MS 3 1 0.89237 0.89511 NaN 1 Median 0.89237 0.89511 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17977000 9791900 8185400 17977000 9791900 8185400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3944 1664 4104 20510;20511;20512;20513 21210;21211;21212;21213 21210 4 DAGYGGLSLSIEGPSK EGHTFEPAEFIIDTRDAGYGGLSLSIEGPS AGYGGLSLSIEGPSKVDINTEDLEDGTCRV R D A S K V 1 0 0 1 0 0 1 4 0 1 2 1 0 0 1 3 0 0 1 0 0 0 16 0 1549.7624 P21333;H0Y5C6;Q60FE5 P21333 2074 2089 FLNA Filamin-A no no 2 0.00057023 45.077 By MS/MS By matching 2 1 0.84065 0.74254 3.5179 3 Median NaN NaN NaN 0 0 Median 0.83898 0.73998 0.48772 2 0 Median NaN NaN NaN 0 0 Median 0.86978 0.78624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12141000 6661400 5479900 0 0 0 12012000 6595000 5416900 0 0 0 129410 66377 63032 0 0 0 0 0 0 3945 2088;3120 4105 20514;20515;20516 21214;21215 21214 2 DAHLLVESK IRNLLESYHVPELIKDAHLLVESKNLDFQK VPELIKDAHLLVESKNLDFQKTVQLTSSEL K D A S K N 1 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1010.5397 P42704 P42704 641 649 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00041724 130.75 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.89874 1.1174 19.587 4 Linear 0.88042 0.8722 NaN 1 0 Median 1.2706 1.0706 NaN 1 0 Median 0.6407 0.67327 NaN 1 0 Median 0.91743 0.77759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29201000 12508000 16693000 2771300 1209700 1561600 22858000 9454700 13404000 1629100 1021700 607460 1942300 822200 1120100 0 0 0 0 0 0 3946 2315 4106 20517;20518;20519;20520 21216;21217;21218;21219;21220 21218 5 DAHNALLDIQSSGR MVQLGICAFRQGLTKDAHNALLDIQSSGRA KDAHNALLDIQSSGRAKELLGQGLLLRSLQ K D A G R A 2 1 1 2 0 1 0 1 1 1 2 0 0 0 0 2 0 0 0 0 0 0 14 0 1495.7379 Q99613;B5ME19 Q99613 628 641 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2;3 4.8653E-20 143.94 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 1 2 1.2092 1.0674 12.227 11 Median 1.1491 1.1054 12.316 5 4 Linear 1.243 1.0674 6.1286 3 0 Median 1.3158 1.4079 NaN 1 0 Median 1.2633 1.0764 2.5417 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112110000 52981000 59124000 84434000 40347000 44087000 20351000 9422900 10928000 4193100 1808300 2384800 3126200 1402400 1723800 0 0 0 0 0 0 3947 3757 4107 20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531 21221;21222;21223;21224;21225;21226;21227;21228;21229;21230;21231;21232 21223 12 DAHSIHGTNPQYLVEK ______________________________ AHSIHGTNPQYLVEKIIRTRIYESKYWKEE K D A E K I 1 0 1 1 0 1 1 1 2 1 1 1 0 0 1 1 1 0 1 1 0 0 16 0 1807.8853 Q8NAV1 Q8NAV1 8 23 PRPF38A Pre-mRNA-splicing factor 38A yes yes 3 2.9338E-09 124.16 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.89155 0.86049 12.052 5 Median NaN NaN NaN 0 0 Median 0.89155 0.76111 NaN 1 0 Median 0.86311 0.89095 NaN 1 0 Median 1.2472 1.0556 NaN 1 0 Median 0.85856 0.86049 NaN 1 0 Median 1.007 0.82944 NaN 1 0 Median 52343000 28127000 24216000 0 0 0 1228100 637490 590650 25773000 14429000 11344000 2782900 1400900 1382000 20331000 10565000 9766000 2228600 1095200 1133400 3948 3400 4108 20532;20533;20534;20535;20536 21233;21234;21235;21236;21237 21233 5 DAIAALGLLQK LRSLLEVVVLSRNSRDAIAALGLLQKAVEG RNSRDAIAALGLLQKAVEGLLDATSGADAD R D A Q K A 3 0 0 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1111.6601 A5YKK6;H3BMZ2 A5YKK6 1654 1664 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0042699 48.283 By MS/MS By matching By matching By matching By matching By matching 3 2 2 1 1 1 1.1611 1.0726 23.278 10 Median 1.0962 1.1146 31.278 3 0 Median 1.3406 1.1961 20.839 2 0 Median 0.82671 0.9059 12.727 2 0 Median 1.3834 1.2444 NaN 1 0 Median 1.3986 1.4689 NaN 1 0 Median 1.1543 0.96144 NaN 1 0 Median 9627900 4281000 5346900 4838100 2241500 2596600 1142600 476360 666190 1713200 817970 895230 202480 78567 123910 1296500 467210 829290 435020 199400 235620 3949 503 4109 20537;20538;20539;20540;20541;20542;20543;20544;20545;20546 21238;21239 21238 2 DAIAQAVR SGKPAELLKMFGIDRDAIAQAVRGLITKA_ KMFGIDRDAIAQAVRGLITKA_________ R D A V R G 3 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 842.46102 P29401;A0A0B4J1R6 P29401 610 617 TKT Transketolase yes no 2 0.0023954 108.98 By MS/MS By MS/MS 1 1 1.0344 0.93881 1.7666 2 Median 0.97106 0.92716 NaN 1 0 Median 1.1019 0.95061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69562000 33210000 36352000 9440200 4059800 5380500 60122000 29150000 30972000 0 0 0 0 0 0 0 0 0 0 0 0 3950 2173 4110 20547;20548 21240;21241;21242;21243 21243 4 DAIEELVK GMGEAVQEFVDKEEKDAIEELVKYQLEKTQ FVDKEEKDAIEELVKYQLEKTQRFLKERHI K D A V K Y 1 0 0 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 915.49131 P49959;F8W7U8 P49959 468 475 MRE11A Double-strand break repair protein MRE11A yes no 2 0.065463 46.994 By MS/MS 1 2.041 2.1273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.041 2.1273 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6135600 1916700 4218900 0 0 0 0 0 0 6135600 1916700 4218900 0 0 0 0 0 0 0 0 0 3951 2407 4111 20549 21244 21244 1 DAIGISLLK YVSGDQKEIISYDVKDAIGISLLKKSGIEV ISYDVKDAIGISLLKKSGIEVRLISERACS K D A L K K 1 0 0 1 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 9 0 928.55933 Q8NFW8 Q8NFW8 307 315 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.0074886 51.346 By matching By MS/MS By matching 1 1 1 1.2081 1.1518 16.227 3 Median 1.2081 1.1518 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96432 0.93558 NaN 1 0 Median 1.429 1.2881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38231000 16551000 21680000 729080 383380 345700 0 0 0 9811300 5019000 4792300 27690000 11148000 16542000 0 0 0 0 0 0 3952 3441 4112 20550;20551;20552 21245;21246 21246 2 DAIGISLLKK YVSGDQKEIISYDVKDAIGISLLKKSGIEV SYDVKDAIGISLLKKSGIEVRLISERACSK K D A K K S 1 0 0 1 0 0 0 1 0 2 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1056.6543 Q8NFW8 Q8NFW8 307 316 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.00048085 85.67 By matching By MS/MS 1 1 1.3558 1.3566 16.611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1445 1.2063 NaN 1 0 Median 1.6063 1.5257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10814000 4520000 6294500 0 0 0 0 0 0 2363800 960900 1403000 8450600 3559100 4891500 0 0 0 0 0 0 3953 3441 4113 20553;20554 21247 21247 1 DAIQVVR ETKERLFESMLSECRDAIQVVREELKPDQK ESMLSECRDAIQVVREELKPDQKQRDYILE R D A V R E 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 7 0 799.4552 Q9UHB9 Q9UHB9 346 352 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.030618 80.377 By MS/MS 2 1.2689 1.1003 NaN 1 Median NaN NaN NaN 0 0 Median 1.2689 1.1003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4021000 1912600 2108400 0 0 0 4021000 1912600 2108400 0 0 0 0 0 0 0 0 0 0 0 0 3954 4274 4114 20555;20556 21248;21249 21248 2 DAISGIGTDEK GLMRPPAYCDAKEIKDAISGIGTDEKCLIE KEIKDAISGIGTDEKCLIEILASRTNEQMH K D A E K C 1 0 0 2 0 0 1 2 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 0 1104.5299 P08133;E5RK63;E5RI05;E5RJF5 P08133 103 113 ANXA6 Annexin A6;Annexin yes no 2 0.00011427 129.85 By matching By MS/MS 1 1 0.98434 0.8804 23.573 2 Median 0.77858 0.74523 NaN 1 0 Median 1.2445 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22285000 10580000 11705000 5036900 2478300 2558500 17248000 8101600 9146600 0 0 0 0 0 0 0 0 0 0 0 0 3955 1898 4115 20557;20558 21250;21251 21250 2 DAITQALFLR DVINESGLYRLKGHKDAITQALFLREKNLL LKGHKDAITQALFLREKNLLVTSGKDTMVK K D A L R E 2 1 0 1 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1146.6397 Q9UNX4 Q9UNX4 150 159 WDR3 WD repeat-containing protein 3 yes yes 2 0.00065672 72.485 By MS/MS By matching 4 1 1.0864 1.1975 18.244 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1484 1.2476 8.9334 4 0 Median NaN NaN NaN 0 0 Median 0.88487 0.85808 NaN 1 0 Median NaN NaN NaN 0 0 Median 8033100 3586400 4446800 0 0 0 0 0 0 7329700 3235700 4094000 0 0 0 703460 350700 352760 0 0 0 3956 4351 4116 20559;20560;20561;20562;20563 21252;21253 21253 2 DAKDKLESEMEDAYHEHQANLLR EMEKQQREQVEKNMKDAKDKLESEMEDAYH EMEDAYHEHQANLLRQDLMRRQEELRRMEE K D A L R Q 3 1 1 3 0 1 4 0 2 0 3 2 1 0 0 1 0 0 1 0 0 0 23 2 2741.2715 P23246;H0Y9K7 P23246 514 536 SFPQ Splicing factor, proline- and glutamine-rich yes no 4;5 0.0003736 41.521 By MS/MS By MS/MS 2 2 1.0169 1.2321 17.344 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1581 1.4427 17.756 2 1 Median NaN NaN NaN 0 0 Median 0.96868 1.1415 6.2358 2 1 Median NaN NaN NaN 0 0 Median 41851000 16584000 25266000 0 0 0 0 0 0 29967000 11573000 18393000 0 0 0 11884000 5011200 6872900 0 0 0 3957 2107 4117;4118 20564;20565;20566;20567 21254;21255;21256;21257;21258 21257 867 5 DALEPGQR SYSLEYGKAELEIQKDALEPGQRVVVVDDL AELEIQKDALEPGQRVVVVDDLLATGGTMN K D A Q R V 1 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 8 0 884.43519 P07741;H3BQZ9;H3BQB1 P07741 115 122 APRT Adenine phosphoribosyltransferase yes no 2 0.031575 58.981 By MS/MS 1 1.402 1.1635 NaN 1 Median NaN NaN NaN 0 0 Median 1.402 1.1635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2836000 1118400 1717600 0 0 0 2836000 1118400 1717600 0 0 0 0 0 0 0 0 0 0 0 0 3958 1891 4119 20568 21259 21259 1 DALKTEFK LSYIRYSQICAKVVRDALKTEFKANAKKTS ICAKVVRDALKTEFKANAKKTSGNSVKIVK R D A F K A 1 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 8 1 950.5073 Q5VTU8;P56381 Q5VTU8 25 32 ATP5EP2;ATP5E ATP synthase subunit epsilon-like protein, mitochondrial;ATP synthase subunit epsilon, mitochondrial yes no 2 0.021308 81.191 By matching By MS/MS By matching 1 1 1 1.1317 0.80858 13.834 3 Plateau 1.0124 0.72769 NaN 1 0 Median 1.2652 0.89847 NaN 1 0 Median 0.94783 0.69235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10126000 4491500 5634800 4097200 1920000 2177200 5484200 2361400 3122800 544880 210080 334790 0 0 0 0 0 0 0 0 0 3959 2511 4120 20569;20570;20571 21260 21260 1 DALLAGLKQDEPGQAGSQK RFSFITHLQDKHCSKDALLAGLKQDEPGQA AGLKQDEPGQAGSQKSSTKQPTVGGTSSTP K D A Q K S 3 0 0 2 0 3 1 3 0 0 3 2 0 0 1 1 0 0 0 0 0 0 19 1 1924.9854 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1694 1712 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.00080192 29.766 By MS/MS 2 0.70595 0.78466 8.0395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70595 0.78466 8.0395 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17317000 10794000 6522700 0 0 0 0 0 0 17317000 10794000 6522700 0 0 0 0 0 0 0 0 0 3960 3122 4121 20572;20573 21261 21261 1 DALLAHGTSFLLHDR GRNVQGGIRFGEMERDALLAHGTSFLLHDR DALLAHGTSFLLHDRLFNCSDRSVAHVCVK R D A D R L 2 1 0 2 0 0 0 1 2 0 4 0 0 1 0 1 1 0 0 0 0 0 15 0 1664.8635 Q9H9Y6 Q9H9Y6 1043 1057 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 3 9.3842E-05 55.885 By MS/MS 1 1.0403 1.1439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0403 1.1439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10723000 5084800 5638300 0 0 0 0 0 0 10723000 5084800 5638300 0 0 0 0 0 0 0 0 0 3961 4004 4122 20574 21262 21262 1 DALLLSFK NVMSMASVQLAGAKRDALLLSFKDAKLSVV QLAGAKRDALLLSFKDAKLSVVEYDPGTHD R D A F K D 1 0 0 1 0 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 8 0 905.52222 Q10570;E9PIM1 Q10570 92 99 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.008272 63.565 By matching By MS/MS By matching 1 3 2 1.1789 1.1186 12.546 6 Median NaN NaN NaN 0 0 Median 1.1426 1.015 NaN 1 0 Median 1.0781 1.0879 15.326 3 0 Median 1.3392 1.2251 8.9182 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9739100 5045300 4693800 0 0 0 457870 196880 260990 8923500 4688000 4235500 357710 160440 197270 0 0 0 0 0 0 3962 2753 4123 20575;20576;20577;20578;20579;20580 21263;21264;21265;21266 21263 4 DALLLSFKDAK NVMSMASVQLAGAKRDALLLSFKDAKLSVV GAKRDALLLSFKDAKLSVVEYDPGTHDLKT R D A A K L 2 0 0 2 0 0 0 0 0 0 3 2 0 1 0 1 0 0 0 0 0 0 11 1 1219.6812 Q10570;E9PIM1 Q10570 92 102 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.017317 70.1 By MS/MS 1 0.71045 0.80768 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71045 0.80768 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2695700 1372400 1323300 0 0 0 0 0 0 2695700 1372400 1323300 0 0 0 0 0 0 0 0 0 3963 2753 4124 20581 21267 21267 1 DALNIETAIK AYGSVKAYTNFDAERDALNIETAIKTKGVD FDAERDALNIETAIKTKGVDEVTIVNILTN R D A I K T 2 0 1 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1086.5921 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 38 47 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.00033827 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 1.1488 0.99168 11.669 9 Median 1.0793 0.98228 3.0746 2 1 Median 1.1964 0.79644 13.473 3 0 Plateau 1.1488 1.1112 NaN 1 0 Median 1.1973 1.0157 3.3806 2 0 Median NaN NaN NaN 0 0 Median 1.2142 0.98492 NaN 1 0 Median 776250000 346620000 429630000 178930000 82992000 95943000 260670000 115820000 144850000 220930000 97410000 123520000 107180000 46561000 60619000 0 0 0 8531600 3832100 4699500 3964 1885 4125 20582;20583;20584;20585;20586;20587;20588;20589;20590 21268;21269;21270;21271;21272;21273;21274;21275;21276;21277;21278;21279 21277 12 DALNLAQMQEQTLQLEQQSK VCTSAAVRSGSGYAKDALNLAQMQEQTLQL AQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ K D A S K L 2 0 1 1 0 6 2 0 0 0 4 1 1 0 0 1 1 0 0 0 0 0 20 0 2315.1427 H0Y2W2;Q9NVI7 H0Y2W2 59 78 ATAD3A ATPase family AAA domain-containing protein 3A no no 2;3 2.1243E-07 68.83 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 2 1 1 1 1.1545 1.1665 16.673 8 Median 1.0818 1.0348 7.6054 2 1 Median 1.4578 1.2581 NaN 1 0 Median 1.0638 1.1105 16.286 2 0 Median 1.6033 1.3908 NaN 1 0 Median 1.5286 1.4656 NaN 1 0 Median 1.1176 0.95408 NaN 1 0 Median 18344000 8105400 10239000 10396000 4676800 5719200 1302600 455870 846750 4274000 1963000 2310900 162390 59527 102860 1879100 790980 1088100 330250 159260 170990 3965 1140;4133 4126 20591;20592;20593;20594;20595;20596;20597;20598 21280;21281;21282;21283 21281 4 DALNQATSQVESK NTQLARLQQENSILRDALNQATSQVESKQN LRDALNQATSQVESKQNAELAKLRQELSKV R D A S K Q 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1389.6736 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 807 819 RRBP1 Ribosome-binding protein 1 yes no 2 5.2825E-07 128.17 By MS/MS By MS/MS By MS/MS 2 1 2 1.1525 0.97864 24.764 5 Median 0.87309 0.84377 13.23 2 0 Median 1.1525 0.97864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5569 1.3487 4.3385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28056000 13987000 14069000 16008000 8790000 7217700 6235800 2839600 3396100 0 0 0 5812500 2356900 3455600 0 0 0 0 0 0 3966 4222 4127 20599;20600;20601;20602;20603 21284;21285;21286;21287;21288;21289 21286 6 DALRPPLQNINSVQLK DEAKLIAVEIYRWIRDALRPPLQNINSVQL ALRPPLQNINSVQLKELEEEWVKLPTSAPR R D A L K E 1 1 2 1 0 2 0 0 0 1 3 1 0 0 2 1 0 0 0 1 0 0 16 1 1805.0159 Q14008 Q14008 197 212 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 3.2688E-09 104.24 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 7 3 1 4 0.82588 0.83234 15.599 19 Median 0.80834 0.81396 3.1578 2 0 Median 0.85779 0.82872 20.434 2 0 Median 0.76148 0.86316 14.755 7 0 Median 0.96457 0.90514 6.8568 3 0 Median 1.0984 1.2461 NaN 1 0 Median 0.82099 0.72626 6.0199 4 0 Median 104240000 55066000 49169000 15428000 8069700 7358300 1313600 730160 583430 76611000 41087000 35525000 7188800 3566900 3621900 2417300 937240 1480100 1276400 675790 600560 3967 2850 4128 20604;20605;20606;20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617;20618;20619;20620;20621;20622 21290;21291;21292;21293;21294;21295;21296;21297;21298;21299;21300;21301;21302 21297 13 DALSDLALHFLNK KTGCNVLLIQKSILRDALSDLALHFLNKMK LRDALSDLALHFLNKMKIMVIKDIEREDIE R D A N K M 2 0 1 2 0 0 0 0 1 0 4 1 0 1 0 1 0 0 0 0 0 0 13 0 1455.7722 P50991 P50991 307 319 CCT4 T-complex protein 1 subunit delta yes yes 2 4.1656E-05 90.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1.0709 0.95163 26.724 8 Median 1.0805 1.0385 12.577 2 0 Median 1.1083 0.9341 2.8544 2 0 Median 1.051 1.0657 NaN 1 0 Median 0.84157 0.73857 20.99 2 0 Median 1.704 1.6337 NaN 1 0 Median NaN NaN NaN 0 0 Median 53120000 24085000 29035000 21484000 9582100 11902000 24914000 11576000 13338000 3951400 1718200 2233200 878830 436190 442640 1891500 772480 1119000 0 0 0 3968 2424 4129 20623;20624;20625;20626;20627;20628;20629;20630 21303;21304;21305;21306;21307;21308;21309 21305 7 DALSQLMNGPIR HLVCLCQRHVRHLQRDALSQLMNGPIRKKL LQRDALSQLMNGPIRKKLKIIPEDQSWGGQ R D A I R K 1 1 1 1 0 1 0 1 0 1 2 0 1 0 1 1 0 0 0 0 0 0 12 0 1313.6762 Q9HB40 Q9HB40 307 318 SCPEP1 Retinoid-inducible serine carboxypeptidase yes yes 2 0.011268 36.693 By MS/MS By matching 1 1 1.086 0.99609 5.0743 2 Median 0.95852 0.96098 NaN 1 0 Median 1.2303 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3240900 1565000 1676000 2823300 1357000 1466200 417650 207940 209710 0 0 0 0 0 0 0 0 0 0 0 0 3969 4015 4130 20631;20632 21310;21311 21311 2 DALSSVQESQVAQQAR SFMQGYMKHATKTAKDALSSVQESQVAQQA ALSSVQESQVAQQARGWVTDGFSSLKDYWS K D A A R G 3 1 0 1 0 4 1 0 0 0 1 0 0 0 0 3 0 0 0 2 0 0 16 0 1715.8438 B0YIW2;P02656 B0YIW2 63 78 APOC3 Apolipoprotein C-III yes no 2;3 1.0619E-19 132.76 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4275800 4275800 0 2345100 2345100 0 1930700 1930700 0 0 0 0 0 0 0 0 0 0 0 0 0 3970 560 4131 20633;20634;20635 21312;21313;21314 21312 3 DALVLHK NNACTYNEPESLIYKDALVLHKVLLETRRD EPESLIYKDALVLHKVLLETRRDLEGDEDS K D A H K V 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 794.46504 Q86U86;E7EVG2;H0Y5B5 Q86U86 748 754 PBRM1 Protein polybromo-1 yes no 2 0.050767 52.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 869630 0 869630 0 0 0 0 0 0 869630 0 869630 0 0 0 0 0 0 0 0 0 3971 3273 4132 20636 21315 21315 1 DALVMAQILK ______________________________ KNAPRDALVMAQILKDMGITEYEPRVINQM R D A L K D 2 0 0 1 0 1 0 0 0 1 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1100.6264 Q9HBM6 Q9HBM6 15 24 TAF9B Transcription initiation factor TFIID subunit 9B yes yes 2 0.052592 27.254 By matching By MS/MS 1 2 1.1545 1.1107 9.7703 3 Median 1.2421 1.2284 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1002 1.0594 6.6931 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4844700 2143100 2701600 984530 459990 524540 0 0 0 3860200 1683200 2177100 0 0 0 0 0 0 0 0 0 3972 4022 4133 20637;20638;20639 21316 21316 1 DAMENEMR SEIQAEQDRKIEEVRDAMENEMRTQLRRQA RKIEEVRDAMENEMRTQLRRQAAAHTDHLR R D A M R T 1 1 1 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 8 0 994.38482 Q16891;B9A067;C9J406;H7C463 Q16891 473 480 IMMT MICOS complex subunit MIC60 yes no 2 0.0035575 88.942 By MS/MS By MS/MS 1 1 1.06 0.98429 33.554 2 Median 0.78097 0.7764 NaN 1 0 Median 1.4387 1.2479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3643500 1639000 2004400 1064200 599710 464470 2579300 1039300 1540000 0 0 0 0 0 0 0 0 0 0 0 0 3973 3001 4134 20640;20641 21317;21318;21319;21320 21320 4 DAMLELNASNDR SILCLARALLGPALKDAMLELNASNDRGID ALKDAMLELNASNDRGIDVVRNKIKMFAQQ K D A D R G 2 1 2 2 0 0 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 12 0 1347.6089 P35250 P35250 100 111 RFC2 Replication factor C subunit 2 yes yes 2 1.0404E-21 161.63 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.3563 1.1764 23.075 5 Median 1.3563 1.3607 NaN 1 0 Median 1.366 1.1764 NaN 1 0 Median 0.82656 0.85238 4.1155 2 1 Median 1.4905 1.3154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22227000 11823000 10404000 2463400 1140400 1323000 1042500 447430 595040 17085000 9507600 7577000 1636800 728070 908770 0 0 0 0 0 0 3974 2238 4135 20642;20643;20644;20645;20646 21321;21322;21323;21324;21325 21321 5 DAMQYASESK WKQSVELCKKDSLYKDAMQYASESKDTELA DSLYKDAMQYASESKDTELAEELLQWFLQE K D A S K D 2 0 0 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 10 0 1128.4757 A0A087WVQ6;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 1540 1549 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00036469 105.52 By MS/MS By MS/MS 2 3 1.4275 1.2646 11.376 5 Median 1.2218 1.1826 6.4435 2 0 Median 1.6578 1.4472 8.6039 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20218000 8310300 11908000 2737800 1355200 1382600 17480000 6955100 10525000 0 0 0 0 0 0 0 0 0 0 0 0 3975 44 4136 20647;20648;20649;20650;20651 21326;21327;21328;21329;21330;21331;21332 21328 7 DANDPVDDR GATGFTTRSDIGPARDANDPVDDRHAPPGK DIGPARDANDPVDDRHAPPGKRTVGDQMKK R D A D R H 1 1 1 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 9 0 1015.4207 O94906 O94906 39 47 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.017009 42.109 By MS/MS By MS/MS 1 1 0.77869 0.75066 4.7417 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72379 0.77626 NaN 1 0 Median 0.83775 0.72591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1764700 939840 824840 0 0 0 0 0 0 1375800 763760 612060 388860 176090 212780 0 0 0 0 0 0 3976 1735 4137 20652;20653 21333;21334;21335 21335 3 DANGNSFATR NRERHPGSFDVVHVKDANGNSFATRLSNIF VVHVKDANGNSFATRLSNIFVIGKGNKPWI K D A T R L 2 1 2 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 10 0 1051.4683 P62701;Q8TD47 P62701 212 221 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2 0.0070645 48.283 By MS/MS By matching 2 1 1.1205 1.0706 55.736 3 Median 0.78892 0.74655 50.981 2 0 Median 1.8239 1.5589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4575900 1982100 2593800 3989900 1752600 2237300 585930 229480 356450 0 0 0 0 0 0 0 0 0 0 0 0 3977 2593 4138 20654;20655;20656 21336 21336 1 DANLYISGLPR TIKVSYARPSSEVIKDANLYISGLPRTMTQ EVIKDANLYISGLPRTMTQKDVEDMFSRFG K D A P R T 1 1 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1217.6404 Q15717;M0QZR9;M0R055 Q15717 105 115 ELAVL1 ELAV-like protein 1 yes no 2 0.00014249 87.913 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 4 4 0.93473 0.81897 73.89 13 Median 0.1659 0.16186 NaN 1 0 Median 1.0269 0.8641 NaN 1 0 Median 0.82969 0.8052 NaN 1 0 Median 0.37645 0.3324 133.86 2 0 Median 0.84726 0.84654 76.319 4 0 Median 1.0225 0.81803 6.5878 4 0 Median 181370000 96151000 85215000 5424700 4543300 881360 2078900 1072000 1006900 37422000 19366000 18056000 3050700 2199200 851540 122180000 63766000 58419000 11206000 5205300 6000800 3978 2964 4139 20657;20658;20659;20660;20661;20662;20663;20664;20665;20666;20667;20668;20669 21337;21338;21339;21340;21341;21342;21343;21344;21345;21346;21347;21348 21342 12 DANNGNLQLR ILFKEKAKEALGKAKDANNGNLQLRNKEVT LGKAKDANNGNLQLRNKEVTWEVLEGEVEK K D A L R N 1 1 3 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1113.5527 P05455 P05455 288 297 SSB Lupus La protein yes yes 2 0.0016668 63.48 By MS/MS 1 0.95227 0.95007 NaN 1 Median 0.95227 0.95007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2251400 1220500 1031000 2251400 1220500 1031000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3979 1867 4140 20670 21349 21349 1 DANSSFFDNSSSPHLLDQLK QEVTPSRSTLQIGKRDANSSFFDNSSSPHL FFDNSSSPHLLDQLKAQNQELRNKINELEL R D A L K A 1 0 2 3 0 1 0 0 1 0 3 1 0 2 1 5 0 0 0 0 0 0 20 0 2221.0287 P49454 P49454 265 284 CENPF Centromere protein F yes yes 3 0.015165 24.011 By MS/MS 1 0.88746 0.95403 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88746 0.95403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5601200 3019200 2582000 0 0 0 0 0 0 5601200 3019200 2582000 0 0 0 0 0 0 0 0 0 3980 2383 4141 20671 21350 21350 1 DANSVTSSLR ASFAVKLFKAWMAEKDANSVTSSLRKANLD WMAEKDANSVTSSLRKANLDKRLLELFPVN K D A L R K 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1048.5149 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4;Q75MG1;E7EMS9 E7ETZ4 199 208 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.013049 56.729 By MS/MS 1 1.1652 0.99822 NaN 1 Median NaN NaN NaN 0 0 Median 1.1652 0.99822 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1263600 568100 695540 0 0 0 1263600 568100 695540 0 0 0 0 0 0 0 0 0 0 0 0 3981 892 4142 20672 21351 21351 1 DANVSGTLVSSSTLEK RYSRTDRSGFPRYNRDANVSGTLVSSSTLE ANVSGTLVSSSTLEKKIEDLEKEVVRERQE R D A E K K 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 4 2 0 0 2 0 0 16 0 1606.805 Q96IZ0 Q96IZ0 255 270 PAWR PRKC apoptosis WT1 regulator protein yes yes 2 2.472E-10 111.79 By matching By MS/MS By MS/MS 1 3 4 1.0047 0.93805 34.511 8 Median 1.1006 1.069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0294 1.0457 45.772 3 1 Plateau 1.1263 0.95473 27.482 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38675000 20652000 18023000 7251500 3736100 3515400 0 0 0 25970000 13900000 12070000 5453400 3015200 2438300 0 0 0 0 0 0 3982 3681 4143 20673;20674;20675;20676;20677;20678;20679;20680 21352;21353;21354;21355;21356;21357;21358;21359 21353 8 DAPAESVAYHAQNNPPVPPKPQPK SHTNIHLLVTTYNLRDAPAESVAYHAQNNP HAQNNPPVPPKPQPKVQEKADIPVKSSPQA R D A P K V 4 0 2 1 0 2 1 0 1 0 0 2 0 0 7 1 0 0 1 2 0 0 24 1 2551.2819 Q9H2P0;A0A2R8Y6X0 Q9H2P0 573 596 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.00075304 34.914 By MS/MS 1 0.29653 0.33195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29653 0.33195 NaN 1 1 Median NaN NaN NaN 0 0 Median 13246000 9763600 3482600 0 0 0 0 0 0 0 0 0 0 0 0 13246000 9763600 3482600 0 0 0 3983 3946 4144 20681 21360 21360 1 DAPQDFHPDR NSEDIRLSPFMADIRDAPQDFHPDRVKARG MADIRDAPQDFHPDRVKARGPGLEKTGVAV R D A D R V 1 1 0 3 0 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 10 0 1196.521 P21333;Q60FE5;A0A087WWY3 P21333 665 674 FLNA Filamin-A no no 2;3 0.00057276 73.233 By matching By MS/MS 1 5 0.79839 0.74956 23.337 6 Median 0.83007 0.8314 NaN 1 0 Median 0.76792 0.67579 25.905 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17831000 8327800 9503200 961180 591290 369890 16870000 7736600 9133300 0 0 0 0 0 0 0 0 0 0 0 0 3984 2088;3120 4145 20682;20683;20684;20685;20686;20687 21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371 21363 11 DAPTHLPSVDLSNPFTK APPVPPKDHGGIFSRDAPTHLPSVDLSNPF PTHLPSVDLSNPFTKEAALAHAAPPPPPGE R D A T K E 1 0 1 2 0 0 0 0 1 0 2 1 0 1 3 2 2 0 0 1 0 0 17 0 1837.921 Q5VT52 Q5VT52 1230 1246 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 0.0055971 25.167 By MS/MS By MS/MS 2 1 0.54719 0.5973 3.4768 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55659 0.60702 2.2829 2 0 Median NaN NaN NaN 0 0 Median 0.54719 0.57549 NaN 1 0 Median NaN NaN NaN 0 0 Median 8693800 5364800 3328900 0 0 0 0 0 0 5180000 3126500 2053400 0 0 0 3513800 2238300 1275500 0 0 0 3985 3110 4146 20688;20689;20690 21372;21373 21372 2 DAPWTASSSEKAPDMSSSEEFPSFGAQVAPK AHEEAKAPSRGFVVRDAPWTASSSEKAPDM SSEEFPSFGAQVAPKTLPWGPKR_______ R D A P K T 5 0 0 2 0 1 3 1 0 0 0 2 1 2 4 7 1 1 0 1 0 0 31 1 3240.4557 Q00341;A0A024R4E5;H0Y394 Q00341 1230 1260 HDLBP Vigilin yes no 3 0.068077 14.817 By MS/MS 1 0.50284 0.49183 NaN 1 Median 0.50284 0.49183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6638600 5038100 1600500 6638600 5038100 1600500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3986 4 4147 20691 21374 21374 1 DAQEFAADVR DLSTVKRKMENRDYRDAQEFAADVRLMFSN NRDYRDAQEFAADVRLMFSNCYKYNPPDHD R D A V R L 3 1 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2 H0Y6K2 416 425 BRD2 Bromodomain-containing protein 2 yes no 2 0.00037209 81.338 By MS/MS By MS/MS 2 2 0.9471 1.3434 41.122 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9471 0.97766 22.087 2 0 Median 0.80412 0.65857 54.994 2 0 Median 14790000 6612900 8176800 0 0 0 0 0 0 0 0 0 0 0 0 11948000 5387800 6559900 2842000 1225100 1616800 3987 279 4148 20692;20693;20694;20695 21375;21376;21377 21375 3 DAQEFGADVR DMSTIKSKLEAREYRDAQEFGADVRLMFSN AREYRDAQEFGADVRLMFSNCYKYNPPDHE R D A V R L 2 1 0 2 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1106.4993 O60885;M0QZD9 O60885 414 423 BRD4 Bromodomain-containing protein 4 yes no 2 0.00029687 126.07 By MS/MS By MS/MS 2 1 1.1612 1.02 37.418 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.301 1.4071 45.937 2 0 Median 1.1612 1.02 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20736000 9830200 10906000 0 0 0 0 0 0 18257000 8571800 9685600 2478400 1258400 1220000 0 0 0 0 0 0 3988 1638 4149 20696;20697;20698 21378;21379;21380 21378 3 DAQELYAAGENR NRDESTNVDMSLAQRDAQELYAAGENRLGT AQRDAQELYAAGENRLGTDESKFNAVLCSR R D A N R L 3 1 1 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 12 0 1335.6055 P50995 P50995 360 371 ANXA11 Annexin A11 yes yes 2 3.7563E-05 96.015 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0875 0.91389 79.199 5 Median 0.87174 0.8464 NaN 1 0 Median 1.0875 0.91389 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.18499 0.15847 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1322 0.97539 4.1355 2 2 Median 36655000 19365000 17289000 6759300 3888300 2870900 16303000 7004400 9298300 0 0 0 6535800 5560800 974970 0 0 0 7056800 2911900 4144900 3989 2425 4150 20699;20700;20701;20702;20703 21381;21382;21383;21384;21385;21386 21383 6 DAQEMADSLGVR PQYAVILAFDVRIERDAQEMADSLGVRIFS IERDAQEMADSLGVRIFSAEIIYHLFDAFT R D A V R I 2 1 0 2 0 1 1 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1290.5874 A0A087WUT6;O60841 A0A087WUT6 1044 1055 EIF5B Eukaryotic translation initiation factor 5B yes no 2 5.1455E-06 100.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1.1585 1.0204 24.675 7 Median 1.6373 1.5299 12.41 2 0 Median 1.1032 0.94379 NaN 1 0 Median 1.3995 1.5389 NaN 1 0 Median 1.1316 0.99438 3.2956 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43069000 17519000 25550000 20888000 8064700 12823000 2288500 1092300 1196200 11087000 4392800 6693800 8806300 3969400 4836800 0 0 0 0 0 0 3990 35 4151;4152 20704;20705;20706;20707;20708;20709;20710;20711 21387;21388;21389;21390;21391;21392;21393;21394;21395 21388 13 9 DAQHYGGWEHR NEPSVFNGPEVTMLKDAQHYGGWEHRDVHN TMLKDAQHYGGWEHRDVHNIYGLYVHMATA K D A H R D 1 1 0 1 0 1 1 2 2 0 0 0 0 0 0 0 0 1 1 0 0 0 11 0 1354.5803 E9PKU7;Q14697;F5H6X6 Q14697 559 569 GANAB Neutral alpha-glucosidase AB no no 2;3 3.6607E-05 118.31 By MS/MS By MS/MS 2 5 1.3048 1.1278 11.39 7 Median 1.1465 1.1275 0.061497 2 0 Median 1.3528 1.1278 13.755 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55980000 23957000 32022000 4263700 1792600 2471100 51716000 22165000 29551000 0 0 0 0 0 0 0 0 0 0 0 0 3991 2896;951 4153 20712;20713;20714;20715;20716;20717;20718 21396;21397;21398;21399;21400;21401;21402;21403;21404;21405;21406 21400 11 DAQIAMMQQR LELELAENRKLLTEKDAQIAMMQQRIDRLA LLTEKDAQIAMMQQRIDRLALLNEKQAASP K D A Q R I 2 1 0 1 0 3 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 10 0 1190.5536 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 248 257 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 7.501E-11 178.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0919 1.0486 17.5 5 Median NaN NaN NaN 0 0 Median 1.7168 1.4682 NaN 1 0 Median 1.0002 1.0902 NaN 1 0 Median 1.0919 0.96039 NaN 1 0 Median 0.93428 0.95955 NaN 1 0 Median 1.2565 1.0486 NaN 1 0 Median 42530000 20963000 21566000 0 0 0 4789500 1155600 3633900 21032000 11074000 9957800 3796600 2016700 1779900 11531000 6037500 5493500 1380800 679490 701290 3992 2905;77 4154 20719;20720;20721;20722;20723 21407;21408;21409;21410;21411;21412 21407 6 DAQIFIQK EQRKRLCENIAGHLKDAQIFIQKKAVKNFT NIAGHLKDAQIFIQKKAVKNFTEVHPDYGS K D A Q K K 1 0 0 1 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 961.52328 P04040 P04040 469 476 CAT Catalase yes yes 2 0.0071131 68.422 By MS/MS By MS/MS 1 1 1.0581 0.96083 16.041 2 Median 0.89679 0.8578 NaN 1 0 Median 1.2484 1.0762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7861000 3777600 4083300 5226000 2632500 2593500 2635000 1145100 1489800 0 0 0 0 0 0 0 0 0 0 0 0 3993 1841 4155 20724;20725 21413;21414;21415 21413 3 DAQIGWIQTVEDLHER DVARGIAIRMWKGYRDAQIGWIQTVEDLHE AQIGWIQTVEDLHERVPEKADFSPFGNSQG R D A E R V 1 1 0 2 0 2 2 1 1 2 1 0 0 0 0 0 1 1 0 1 0 0 16 0 1908.933 Q9H2M9 Q9H2M9 427 442 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 3 0.001159 34.498 By MS/MS 1 0.82542 0.82073 NaN 1 Median 0.82542 0.82073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2447100 1316300 1130800 2447100 1316300 1130800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3994 3945 4156 20726 21416;21417 21416 2 DAQMLIEDVKR LNKKPHVVTVAGENRDAQMLIEDVKRIVHE GENRDAQMLIEDVKRIVHELDQGQQLSSIG R D A K R I 1 1 0 2 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1316.6758 Q7KZ85 Q7KZ85 856 866 SUPT6H Transcription elongation factor SPT6 yes yes 2;3 2.8868E-05 121.73 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 1 0.96053 1.0693 31.688 9 Median 1.0587 1.0828 NaN 1 0 Median 0.84668 0.80286 54.686 3 1 Median 0.821 0.98313 11.878 2 1 Median 1.0832 1.0457 16.313 2 0 Median 0.96053 1.0879 NaN 1 0 Median NaN NaN NaN 0 0 Median 23150000 11493000 11657000 1958900 874930 1083900 5159500 2491800 2667700 11326000 5910900 5414800 1753300 733210 1020000 2953000 1482200 1470800 0 0 0 3995 3213 4157 20727;20728;20729;20730;20731;20732;20733;20734;20735;20736 21418;21419;21420;21421;21422;21423 21418 6 DAQPSFSAEDIAK FRTVLIACNVKQMSKDAQPSFSAEDIAKIK SKDAQPSFSAEDIAKIKKFSKTRSKDIFDQ K D A A K I 3 0 0 2 0 1 1 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 13 0 1377.6412 P25205;J3KQ69;A0A499FHX9 P25205 271 283 MCM3 DNA replication licensing factor MCM3 yes no 2 1.9408E-05 94.616 By MS/MS By matching By matching 2 1 1 0.85651 0.88078 12.195 4 Median 0.81969 0.79532 18.171 2 0 Median 1.0256 0.90239 NaN 1 0 Median 0.79156 0.85968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40654000 22398000 18255000 20788000 11437000 9350300 3002300 1399200 1603100 16864000 9561900 7301800 0 0 0 0 0 0 0 0 0 3996 2129 4158 20737;20738;20739;20740 21424;21425;21426;21427 21424 4 DAQQVEPEGQEKPSPATVR GPIGKERSLKNRKVKDAQQVEPEGQEKPSP VEPEGQEKPSPATVRSTDPVTTKETKAVSE K D A V R S 2 1 0 1 0 3 3 1 0 0 0 1 0 0 3 1 1 0 0 2 0 0 19 1 2065.0076 E7EPN9;Q9Y520;H7C5N8;A0A2R8Y7F4;A0A2R8YET2 E7EPN9 2132 2150 PRRC2C Protein PRRC2C yes no 3 0.02865 14.614 By matching By MS/MS 1 1 0.69749 0.6934 6.8675 2 Median 0.71101 0.7279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68421 0.66053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1737500 991670 745870 1096500 569000 527520 0 0 0 0 0 0 641020 422670 218350 0 0 0 0 0 0 3997 872 4159 20741;20742 21428 21428 1 DASDDLDDLNFFNQK EDKDLEADEEDTRKKDASDDLDDLNFFNQK DASDDLDDLNFFNQKKKKKKTKKIFDIDEA K D A Q K K 1 0 2 5 0 1 0 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 15 0 1755.7588 P20042 P20042 65 79 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 2.9875E-07 92.538 By MS/MS 2 1.248 1.2141 1.0288 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.248 1.2141 1.0288 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16582000 6955900 9626100 0 0 0 0 0 0 16582000 6955900 9626100 0 0 0 0 0 0 0 0 0 3998 2072 4160 20743;20744 21429;21430 21429 2 DASIVGFFDDSFSEAHSEFLK PLRTEEEFKKFISDKDASIVGFFDDSFSEA FFDDSFSEAHSEFLKAASNLRDNYRFAHTN K D A L K A 2 0 0 3 0 0 2 1 1 1 1 1 0 4 0 4 0 0 0 1 0 0 21 0 2347.0645 P30101 P30101 153 173 PDIA3 Protein disulfide-isomerase A3 yes yes 3 0.034285 12.128 By matching By MS/MS 2 2 1.2625 1.26 13.154 4 Median NaN NaN NaN 0 0 Median 1.4475 1.2572 22.638 2 0 Median 1.2259 1.26 2.5617 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5160600 2322500 2838200 0 0 0 3958900 1731000 2227900 1201700 591490 610230 0 0 0 0 0 0 0 0 0 3999 2189 4161 20745;20746;20747;20748 21431;21432 21431 2 DASLMVTNDGATILK LGPKGMDKILLSSGRDASLMVTNDGATILK DASLMVTNDGATILKNIGVDNPAAKVLVDM R D A L K N 2 0 1 2 0 0 0 1 0 1 2 1 1 0 0 1 2 0 0 1 0 0 15 0 1547.7865 P78371;F5GWF6;F8VQ14 P78371 58 72 CCT2 T-complex protein 1 subunit beta yes no 2 4.0099E-25 146.16 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 4 1 1 1 1 1.1047 1.0167 23.643 11 Median 1.1047 1.0167 9.2324 3 1 Median 1.1525 0.9861 18.485 4 0 Median 1.1077 1.07 NaN 1 0 Median 1.0962 0.94285 NaN 1 0 Median 2.0918 1.9934 NaN 1 0 Median 1.0651 0.90765 NaN 1 0 Median 143900000 66036000 77859000 88558000 41607000 46951000 11618000 5204500 6413800 34313000 15792000 18521000 1719300 829130 890180 7158000 2337700 4820300 528920 266390 262520 4000 2644 4162;4163 20749;20750;20751;20752;20753;20754;20755;20756;20757;20758;20759;20760 21433;21434;21435;21436;21437;21438;21439;21440;21441;21442;21443 21433 1303 11 DASLVVTTSGDHK YRGHTAEILDFALSKDASLVVTTSGDHKAK SKDASLVVTTSGDHKAKVFCVQRPDR____ K D A H K A 1 0 0 2 0 0 0 1 1 0 1 1 0 0 0 2 2 0 0 2 0 0 13 0 1328.6572 C9JG97;C9JEH3;Q13685;H7C0R2 C9JG97 392 404 AAMP Angio-associated migratory cell protein yes no 2 1.5856E-05 156.48 By matching By MS/MS By matching 1 1 1 1.2832 1.1489 39.311 3 Plateau 1.3316 1.2502 NaN 1 0 Median 1.1762 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65266 0.58211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13313000 6210700 7101800 6501900 2895600 3606300 5741500 2743300 2998200 0 0 0 1069100 571840 497220 0 0 0 0 0 0 4001 692 4164 20761;20762;20763 21444;21445 21444 2 DASQTTLLDLDALAR YFWLLCKLVDNIHIKDASQTTLLDLDALAR DASQTTLLDLDALARHLADCIRSREILDHQ K D A A R H 3 1 0 3 0 1 0 0 0 0 4 0 0 0 0 1 2 0 0 0 0 0 15 0 1601.8261 Q70CQ2;A0A0C4DG73 Q70CQ2 1749 1763 USP34 Ubiquitin carboxyl-terminal hydrolase 34;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00078576 58.676 By MS/MS 1 0.66834 0.67808 NaN 1 Median 0.66834 0.67808 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2574700 1508900 1065900 2574700 1508900 1065900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4002 3207 4165 20764 21446 21446 1 DASSLYPGTETMGLR EKRGGKSDKQEESSRDASSLYPGTETMGLR DASSLYPGTETMGLRTCAGESKDYALHVGD R D A L R T 1 1 0 1 0 0 1 2 0 0 2 0 1 0 1 2 2 0 1 0 0 0 15 0 1596.7454 O95425 O95425 162 176 SVIL Supervillin yes yes 2 0.054373 33.87 By MS/MS 1 0.52178 0.57907 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52178 0.57907 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1938600 1307600 631010 0 0 0 0 0 0 1938600 1307600 631010 0 0 0 0 0 0 0 0 0 4003 1772 4166 20765 21447 21447 1 DASSTYSQVENLNR KVSFLLPTLRKVNGKDASSTYSQVENLNRE KDASSTYSQVENLNRELTSRVTAHWEKFMA K D A N R E 1 1 2 1 0 1 1 0 0 0 1 0 0 0 0 3 1 0 1 1 0 0 14 0 1582.7223 Q9UFC0;H7C5S6 Q9UFC0 126 139 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 6.8474E-17 190.86 By MS/MS By MS/MS 3 4 0.99906 1.0539 15.226 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97119 1.0172 9.2562 3 0 Median 1.3208 1.1262 18.282 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50654000 24405000 26249000 0 0 0 0 0 0 43993000 21384000 22610000 6660400 3021300 3639100 0 0 0 0 0 0 4004 4258 4167 20766;20767;20768;20769;20770;20771;20772 21448;21449;21450;21451;21452;21453 21448 6 DASVAEAWLLGQEPYLSSR WEWLRLILEVHQFSRDASVAEAWLLGQEPY AEAWLLGQEPYLSSREIGQSVDEVEKLIKR R D A S R E 3 1 0 1 0 1 2 1 0 0 3 0 0 0 1 3 0 1 1 1 0 0 19 0 2091.0273 Q01082;A0A087WUZ3 Q01082 2025 2043 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.0026194 29.328 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 4 2 2 1 0.90992 0.85555 19.582 14 Median 1.021 1.0153 4.5448 2 0 Median 1.2767 1.1358 13.857 3 0 Median 0.73552 0.81367 19.075 4 0 Median 0.90359 0.78517 2.1301 2 0 Median 0.80643 0.85547 15.82 2 0 Median 0.94673 0.80206 NaN 1 0 Median 16381000 8659700 7721300 4457000 2107200 2349800 1277300 541130 736210 8830600 5039100 3791600 245330 125710 119630 1416200 767300 648860 154510 79282 75225 4005 2681 4168 20773;20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786 21454;21455;21456;21457;21458;21459;21460;21461 21458 8 DASVPLIDVTNLPTPR VQRNKEKGKISSLVKDASVPLIDVTNLPTP ASVPLIDVTNLPTPRKFLDTSHYSTAGSSS K D A P R K 1 1 1 2 0 0 0 0 0 1 2 0 0 0 3 1 2 0 0 2 0 0 16 0 1706.9203 Q96A65 Q96A65 224 239 EXOC4 Exocyst complex component 4 yes yes 2 0.0021366 37.426 By matching By MS/MS By matching 1 1 1 0.80219 0.71 8.6625 3 Median NaN NaN NaN 0 0 Median 0.80219 0.71 NaN 1 0 Median 0.63573 0.68135 NaN 1 0 Median 0.91069 0.80465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371000 2002200 1368800 0 0 0 573110 280020 293090 2612400 1636700 975710 185470 85466 99999 0 0 0 0 0 0 4006 3595 4169 20787;20788;20789 21462 21462 1 DATIASLEETNR IKEMMARHKQELTEKDATIASLEETNRTLT TEKDATIASLEETNRTLTSDVANLANEKEE K D A N R T 2 1 1 1 0 0 2 0 0 1 1 0 0 0 0 1 2 0 0 0 0 0 12 0 1318.6365 O75116;E9PF63;Q14DU5 O75116 965 976 ROCK2 Rho-associated protein kinase 2 yes no 2 0.0054188 59.426 By MS/MS 1 5.7353 4.8878 NaN 1 Median NaN NaN NaN 0 0 Median 5.7353 4.8878 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3845200 632440 3212800 0 0 0 3845200 632440 3212800 0 0 0 0 0 0 0 0 0 0 0 0 4007 1644 4170 20790 21463 21463 1 DATLLIHEATLEDGLEEEAVEK SGDTMPCEALVRMGKDATLLIHEATLEDGL EATLEDGLEEEAVEKTHSTTSQAISVGMRM K D A E K T 3 0 0 2 0 0 6 1 1 1 4 1 0 0 0 0 2 0 0 1 0 0 22 0 2424.1908 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 679 700 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 3 0.014479 16.506 By matching By MS/MS 1 1 1.0246 0.97368 10.01 2 Median 1.027 1.0451 NaN 1 0 Median 1.0222 0.90715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2373300 1041700 1331600 715750 295830 419910 1657500 745850 911690 0 0 0 0 0 0 0 0 0 0 0 0 4008 3782 4171 20791;20792 21464 21464 1 DATLTALDR IAQVSVDKGLKTILKDATLTALDRGQQQVF LKTILKDATLTALDRGQQQVFKGLNDKVKK K D A D R G 2 1 0 2 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 9 0 974.50327 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21 H0YFD6 391 399 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 4.134E-07 164.72 By MS/MS By MS/MS By MS/MS 1 2 1 1.471 1.3788 20.042 4 Median 0.98475 0.93181 NaN 1 1 Median 1.6233 1.4044 0.70271 2 1 Median 1.3386 1.3604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40162000 17115000 23046000 9998300 4919500 5078800 16555000 6447000 10108000 13608000 5748600 7859600 0 0 0 0 0 0 0 0 0 4009 1180 4172 20793;20794;20795;20796 21465;21466;21467;21468;21469 21466 5 DATMEVQR AAAAAAARRQEQTLRDATMEVQRGQFQGRP RQEQTLRDATMEVQRGQFQGRPVSVWDVLF R D A Q R G 1 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 8 0 948.43348 P58107;A0A075B730 P58107 2642 2649 EPPK1 Epiplakin yes no 2 0.0029868 102.72 By MS/MS By MS/MS By matching 1 3 1 1.4588 1.3655 13.814 5 Median 1.409 1.4078 NaN 1 0 Median 1.6404 1.3655 17.702 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4588 1.2084 NaN 1 0 Median 9043200 3690800 5352500 1013800 435230 578600 7674700 3097200 4577500 0 0 0 0 0 0 0 0 0 354660 158280 196380 4010 2520 4173 20797;20798;20799;20800;20801 21470;21471;21472;21473;21474;21475;21476;21477 21475 8 DATNVAAAFEEAVR CRDNGDYPYFETSAKDATNVAAAFEEAVRR KDATNVAAAFEEAVRRVLATEDRSDHLIQT K D A V R R 5 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 14 0 1462.7052 P51151 P51151 157 170 RAB9A Ras-related protein Rab-9A yes yes 2 6.563E-05 90.685 By MS/MS 1 1.0093 0.95204 NaN 1 Median 1.0093 0.95204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3604700 1610800 1994000 3604700 1610800 1994000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4011 2429 4174 20802 21478 21478 1 DATNVGDEGGFAPNILENK VYHNLKNVIKEKYGKDATNVGDEGGFAPNI VGDEGGFAPNILENKEGLELLKTAIGKAGY K D A N K E 2 0 3 2 0 0 2 3 0 1 1 1 0 1 1 0 1 0 0 1 0 0 19 0 1959.9174 P06733;A0A2R8Y6G6 P06733 203 221 ENO1 Alpha-enolase yes no 2;3 2.6141E-18 134.68 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 5 6 4 1 1 0.96719 0.88288 23.847 20 Median 1.2558 1.284 22.608 3 0 Median 0.91036 0.78507 22.537 5 0 Median 0.93255 0.88828 15.397 6 0 Median 0.91147 0.79991 19.469 4 0 Median 1.1456 1.2041 NaN 1 0 Median 0.98693 0.83944 NaN 1 0 Median 369460000 180030000 189430000 30317000 14413000 15904000 123550000 59732000 63822000 204220000 100180000 104040000 9902800 4984200 4918500 1338100 661670 676470 127570 62429 65141 4012 1873 4175 20803;20804;20805;20806;20807;20808;20809;20810;20811;20812;20813;20814;20815;20816;20817;20818;20819;20820;20821;20822 21479;21480;21481;21482;21483;21484;21485;21486;21487;21488;21489;21490 21484 12 DATNVGDEGGFAPNILENKEGLELLK VYHNLKNVIKEKYGKDATNVGDEGGFAPNI APNILENKEGLELLKTAIGKAGYTDKVVIG K D A L K T 2 0 3 2 0 0 4 4 0 1 4 2 0 1 1 0 1 0 0 1 0 0 26 1 2742.3712 P06733;A0A2R8Y6G6 P06733 203 228 ENO1 Alpha-enolase yes no 2;3 1.7819E-26 92.773 By MS/MS By MS/MS By matching 3 3 1 0.87834 0.85551 9.4738 7 Median 0.87834 0.83811 10.311 3 0 Plateau 0.93402 0.85551 7.934 3 0 Median NaN NaN NaN 0 0 Median 1.0216 0.97038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54478000 25403000 29075000 17849000 8764000 9085000 31191000 14274000 16917000 0 0 0 5437800 2364800 3073000 0 0 0 0 0 0 4013 1873 4176 20823;20824;20825;20826;20827;20828;20829 21491;21492;21493;21494;21495 21491 5 DATSRPTDNILIPQLIR MVLAGASEFDPQYNKDATSRPTDNILIPQL TSRPTDNILIPQLIREIGSINLKKNEPPLT K D A I R E 1 2 1 2 0 1 0 0 0 3 2 0 0 0 2 1 2 0 0 0 0 0 17 1 1922.0585 Q9UGP8 Q9UGP8 263 279 SEC63 Translocation protein SEC63 homolog yes yes 3 0.0068677 25.054 By MS/MS By MS/MS 2 1 0.50794 0.55198 21.138 3 Median 0.47719 0.5037 12.944 2 0 Median 0.70817 0.70065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6228400 3841200 2387200 4301500 2764100 1537400 1926900 1077100 849790 0 0 0 0 0 0 0 0 0 0 0 0 4014 4264 4177 20830;20831;20832 21496;21497 21496 2 DAVDFLR GPDIARSVSCPLLSRDAVDFLRGHLVPKEM VSCPLLSRDAVDFLRGHLVPKEMSLWESLG R D A L R G 1 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 834.42357 A0A3B3ISQ4;Q9H6S3 A0A3B3ISQ4 375 381 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.047302 41.502 By MS/MS By matching By matching 1 1 1 1.3126 1.0485 31.296 3 Median 0.77454 0.76866 NaN 1 0 Median 1.6008 1.4374 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3126 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1746800 948690 798120 1357300 780060 577210 206400 105600 100800 0 0 0 183150 63038 120110 0 0 0 0 0 0 4015 426 4178 20833;20834;20835 21498;21499 21498 2 DAVEDLESVGK DGAKKAVGGLGKLGKDAVEDLESVGKGAVH KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ K D A G K G 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1160.5561 P81605 P81605 86 96 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 0.00044025 93.111 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 5 2 0.094862 0.080254 117.1 14 Median 0.10101 0.09752 28.3 3 3 Median 0.019484 0.016592 13.691 2 2 Median 0.18524 0.18785 0.57076 2 2 Median 0.03577 0.026706 94.84 5 5 Median 0.28296 0.30449 4.9043 2 2 Median NaN NaN NaN 0 0 Median 133170000 122440000 10730000 50521000 47228000 3293000 15694000 15398000 296240 22474000 18953000 3520900 34019000 32510000 1509300 10462000 8351500 2110900 0 0 0 4016 2650 4179 20836;20837;20838;20839;20840;20841;20842;20843;20844;20845;20846;20847;20848;20849;20850;20851 21500;21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512;21513;21514;21515;21516 21513 17 DAVFIPAGWDNEK TYGFHFTTPALVVEKDAVFIPAGWDNEKKI EKDAVFIPAGWDNEKKIAILHENFTTVKPE K D A E K K 2 0 1 2 0 0 1 1 0 1 0 1 0 1 1 0 0 1 0 1 0 0 13 0 1460.6936 O43237 O43237 306 318 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes yes 2 0.0029978 62.303 By MS/MS 1 0.73759 0.75569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73759 0.75569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3103000 1842600 1260400 0 0 0 0 0 0 3103000 1842600 1260400 0 0 0 0 0 0 0 0 0 4017 1559 4180 20852 21517 21517 1 DAVFLAER VQAAIWQALNHYAYRDAVFLAERLYAEVHS LNHYAYRDAVFLAERLYAEVHSEEALFLLA R D A E R L 2 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 919.47633 G5EA36;F6QPS0;I3L3H6;K7EMA6;I3L3G1;E9PRZ6 G5EA36 23 30 CDC27 no no 2 0.0078694 65.252 By MS/MS By matching 1 1 0.63966 0.68527 69.511 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0433 1.1203 NaN 1 0 Median 0.39218 0.41918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3660900 1772000 1888900 0 0 0 0 0 0 3330100 1539300 1790700 330870 232680 98190 0 0 0 0 0 0 4018 1135 4181 20853;20854 21518;21519 21518 2 DAVIQDLER RTARIASDEEIQGTKDAVIQDLERKLRFKE EIQGTKDAVIQDLERKLRFKEDLLNNGQPR K D A E R K 1 1 0 2 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1057.5404 Q8WX93;A0A3B3ISX8 Q8WX93 902 910 PALLD Palladin yes no 2 0.012866 60.59 By MS/MS 1 0.6874 0.67272 NaN 1 Median 0.6874 0.67272 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2720700 1813200 907500 2720700 1813200 907500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4019 3515 4182 20855 21520 21520 1 DAVLLLFANK VADELQKMLLVDELRDAVLLLFANKQDLPN VDELRDAVLLLFANKQDLPNAMAISEMTDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 10 0 1102.6386 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 118 127 ARF4 ADP-ribosylation factor 4 yes no 2 0.0095388 45.081 By matching By MS/MS By matching 1 1 2 1.1059 0.95295 5.7524 4 Median 1.052 0.99123 NaN 1 0 Median 1.0023 0.87557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1777 0.95295 4.1432 2 0 Median 1945800 915730 1030100 799700 392390 407310 641670 292520 349150 0 0 0 0 0 0 0 0 0 504450 230820 273630 4020 2055 4183 20856;20857;20858;20859 21521;21522 21522 2 DAVLLVFANK AREELMRMLAEDELRDAVLLVFANKQDLPN EDELRDAVLLVFANKQDLPNAMNAAEITDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 2 0 0 10 0 1088.623 P84077;P61204;F5H423;P84085;C9J1Z8 P84077 118 127 ARF1;ARF3;ARF5 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 no no 2 0.00065672 72.485 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 1.2234 1.0988 42.983 8 Median 1.2465 1.178 NaN 1 0 Median 1.1935 1.0586 8.7496 2 0 Median 1.2579 1.2298 19.405 2 0 Median 1.2099 0.97059 NaN 1 0 Median 2.9292 3.4636 NaN 1 0 Median 1.1171 0.93191 NaN 1 0 Median 15697000 6832000 8865400 7355900 3358400 3997500 2189300 983010 1206300 4842300 2002700 2839500 102510 47880 54629 596550 172030 424520 610930 267940 342990 4021 2549;2665 4184 20860;20861;20862;20863;20864;20865;20866;20867 21523;21524;21525;21526;21527 21523 5 DAVSGLAFR EAQSCQHLYTFTGHRDAVSGLAFRRGTHQL TFTGHRDAVSGLAFRRGTHQLYSTSHDRSV R D A F R R 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 934.48723 O43818 O43818 242 250 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.0007524 100.19 By MS/MS By matching 1 2 0.93487 0.81822 42.456 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0312 1.0307 NaN 1 0 Median 0.63234 0.60852 41.874 2 0 Median 11806000 5905900 5900300 0 0 0 0 0 0 0 0 0 0 0 0 9918000 4767500 5150400 1888200 1138400 749890 4022 1594 4185 20868;20869;20870 21528;21529 21528 2 DAVSNTTNQLESK EAEIAHLKQENGILRDAVSNTTNQLESKQS LRDAVSNTTNQLESKQSAELNKLRQDYARL R D A S K Q 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 13 0 1405.6685 Q86UP2 Q86UP2 431 443 KTN1 Kinectin yes yes 2 0.00026187 79.201 By MS/MS By MS/MS By MS/MS 1 2 1 0.88312 0.77631 10.154 3 Median 0.77578 0.76349 NaN 1 0 Median 0.97852 0.84389 11.805 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16725000 8419300 8305200 3750900 1883400 1867500 12974000 6535900 6437700 0 0 0 0 0 0 0 0 0 0 0 0 4023 3280 4186 20871;20872;20873;20874 21530;21531;21532;21533 21533 4 DAVTYTEHAK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT ENVIRDAVTYTEHAKRKTVTAMDVVYALKR R D A A K R 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 10 0 1133.5353 P62805 P62805 69 78 HIST1H4A Histone H4 yes yes 1;2 0.00038574 123.16 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 12 12 0.93467 1.0008 19.96 32 Median 0.59374 0.56035 NaN 1 0 Median 1.5626 1.2882 NaN 1 0 Median 0.84827 0.81325 5.9919 4 0 Median 1.5581 1.2695 11.665 2 0 Median 0.91213 0.96051 11.902 12 0 Median 1.387 1.1447 9.1051 12 0 Median 510960000 250510000 260460000 219160 127490 91674 6860500 2647800 4212700 8218500 4197200 4021300 944110 362440 581670 432730000 217660000 215070000 61988000 25507000 36481000 4024 2597 4187 20875;20876;20877;20878;20879;20880;20881;20882;20883;20884;20885;20886;20887;20888;20889;20890;20891;20892;20893;20894;20895;20896;20897;20898;20899;20900;20901;20902;20903;20904;20905;20906 21534;21535;21536;21537;21538;21539;21540;21541;21542;21543;21544;21545;21546;21547;21548;21549;21550;21551;21552;21553;21554;21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573 21547 40 DAVTYTEHAKR ETRGVLKVFLENVIRDAVTYTEHAKRKTVT NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ R D A K R K 2 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 11 1 1289.6364 P62805 P62805 69 79 HIST1H4A Histone H4 yes yes 2;3 4.4877E-05 103.22 By matching By matching By matching By MS/MS By MS/MS 2 1 1 10 3 1.0317 0.98395 28.196 17 Plateau 0.73471 0.72045 20.451 2 0 Median 0.85155 0.75183 NaN 1 0 Median 0.63884 0.67233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92111 1.004 27.647 10 0 Median 1.3626 1.0868 6.7709 3 0 Plateau 72934000 34950000 37984000 304840 176860 127980 288900 133000 155900 255710 141710 114000 0 0 0 58785000 29072000 29713000 13300000 5426400 7873200 4025 2597 4188 20907;20908;20909;20910;20911;20912;20913;20914;20915;20916;20917;20918;20919;20920;20921;20922;20923 21574;21575;21576;21577;21578;21579;21580;21581;21582;21583;21584;21585;21586;21587;21588 21580 14 DAVTYTEHAKRK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT VIRDAVTYTEHAKRKTVTAMDVVYALKRQG R D A R K T 2 1 0 1 0 0 1 0 1 0 0 2 0 0 0 0 2 0 1 1 0 0 12 2 1417.7314 P62805 P62805 69 80 HIST1H4A Histone H4 yes yes 3 0.00020518 65.5 By MS/MS By MS/MS 2 1 0.92406 0.97934 12.042 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82079 0.90694 10.861 2 0 Median 1.4014 1.065 NaN 1 0 Median 1428400 678470 749970 0 0 0 0 0 0 0 0 0 0 0 0 998140 503580 494570 430300 174900 255400 4026 2597 4189 20924;20925;20926 21589;21590 21590 2 DAVVYPILVEFTR AALSKAFKVKPFVVRDAVVYPILVEFTREV VRDAVVYPILVEFTREVEEEPGIHSLKHNK R D A T R E 1 1 0 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 3 0 0 13 0 1520.8239 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 439 451 HYOU1 Hypoxia up-regulated protein 1 yes no 2 3.8991E-05 90.685 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0712 1.0445 24.198 4 Median 1.0141 0.98056 NaN 1 0 Median 1.1101 0.9817 NaN 1 0 Median 1.0337 1.1114 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5671 1.6356 NaN 1 0 Median NaN NaN NaN 0 0 Median 7077500 3299200 3778300 5194500 2479800 2714700 774030 330170 443850 842780 379890 462890 0 0 0 266200 109320 156880 0 0 0 4027 101 4190 20927;20928;20929;20930 21591;21592;21593;21594;21595;21596 21593 6 DAWGPGAAK GFVEPDHYVVVGAQRDAWGPGAAKSGVGTA VVGAQRDAWGPGAAKSGVGTALLLKLAQMF R D A A K S 3 0 0 1 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 9 0 871.41882 P02786;G3V0E5;Q9UP52 P02786 410 418 TFRC;TFR2 Transferrin receptor protein 1;Transferrin receptor protein 1, serum form;Transferrin receptor protein 2 yes no 2 0.032947 47.849 By MS/MS 1 0.9622 0.85379 NaN 1 Median NaN NaN NaN 0 0 Median 0.9622 0.85379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1668700 880360 788310 0 0 0 1668700 880360 788310 0 0 0 0 0 0 0 0 0 0 0 0 4028 1836 4191 20931 21597 21597 1 DAWQMTEEEYTPPAGAK AITSAAIGTSSVAARDAWQMTEEEYTPPAG WQMTEEEYTPPAGAKVNDVVPWVLDVILNK R D A A K V 3 0 0 1 0 1 3 1 0 0 0 1 1 0 2 0 2 1 1 0 0 0 17 0 1922.8356 Q5VYK3;J3KN16 Q5VYK3 918 934 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 2.2971E-05 74.46 By MS/MS By matching 1 1 0.73115 0.66784 0.12156 2 Median 0.6938 0.66841 NaN 1 0 Median 0.77051 0.66726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7297800 3946400 3351400 6771100 3668900 3102200 526680 277540 249130 0 0 0 0 0 0 0 0 0 0 0 0 4029 3116 4192 20932;20933 21598;21599 21599 2 DAYLQSLAK ______________________________ ASLLAKDAYLQSLAKKICSHSAPEQQARTR K D A A K K 2 0 0 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1007.5288 O75683 O75683 8 16 SURF6 Surfeit locus protein 6 yes yes 2 0.0014358 81.548 By matching By MS/MS 1 1 1.154 1.0954 0.19286 2 Median 1.1611 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.147 1.0939 NaN 1 0 Median NaN NaN NaN 0 0 Median 10807000 4571300 6235600 2192300 1097900 1094400 0 0 0 0 0 0 0 0 0 8614500 3473400 5141200 0 0 0 4030 1690 4193 20934;20935 21600;21601 21600 2 DAYQVILDGVK YGILADATEQVGQHKDAYQVILDGVKGGTK GQHKDAYQVILDGVKGGTKEKRLAAQFIPK K D A V K G 1 0 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1219.6449 G3V1C3;Q9BZZ5;E9PQK6 G3V1C3 26 36 API5 Apoptosis inhibitor 5 yes no 2 0.00018232 77.677 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 1.2546 1.0935 18.549 11 Median 1.3259 1.2757 21.803 2 0 Median 1.2713 1.0709 32.866 2 0 Median 0.98286 0.99209 4.3961 2 0 Median 1.2585 1.0731 3.2032 2 0 Median 1.4492 1.3818 NaN 1 0 Median 1.5069 1.2553 22.71 2 0 Median 190020000 86830000 103190000 12061000 5360000 6701400 25500000 10692000 14808000 132420000 62128000 70296000 15429000 6624300 8804900 3823800 1670800 2153000 783730 354840 428890 4031 1103 4194 20936;20937;20938;20939;20940;20941;20942;20943;20944;20945;20946 21602;21603;21604;21605;21606;21607;21608;21609 21609 8 DAYRPTTDADKIEDEVTR YIDYYEFVAALHPNKDAYRPTTDADKIEDE RPTTDADKIEDEVTRQVAQCKCAKRFQVEQ K D A T R Q 2 2 0 4 0 0 2 0 0 1 0 1 0 0 1 0 3 0 1 1 0 0 18 2 2093.9865 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314;H0Y4F5;H0Y6T5 H3BPE1 7212 7229 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.7189E-06 67.43 By MS/MS By matching 1 1 0.82963 0.80018 40.268 2 Median 0.62393 0.6019 NaN 1 0 Median 1.1031 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21625000 11159000 10466000 15846000 7857700 7987900 5779600 3301300 2478300 0 0 0 0 0 0 0 0 0 0 0 0 4032 1220 4195 20947;20948 21610 21610 1 DAYSGGAVNLYHVR AYDLARRAIYQATYRDAYSGGAVNLYHVRE RDAYSGGAVNLYHVREDGWIRVSSDNVADL R D A V R E 2 1 1 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 2 2 0 0 14 0 1520.7372 P28074 P28074 226 239 PSMB5 Proteasome subunit beta type-5 yes yes 2;3 2.3286E-33 216.45 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 2 1 1.1355 1.039 10.559 16 Median 1.0639 1.0719 2.6351 5 2 Median 1.2155 1.0076 6.6245 5 0 Median 1.223 1.1753 6.1709 3 2 Plateau 1.1332 0.93945 29.287 2 0 Median 0.85143 0.97889 NaN 1 0 Median NaN NaN NaN 0 0 Median 370430000 167030000 203400000 297200000 135200000 162010000 41894000 18323000 23571000 23111000 9524500 13587000 6864600 3012700 3851900 1359900 972680 387180 0 0 0 4033 2162 4196 20949;20950;20951;20952;20953;20954;20955;20956;20957;20958;20959;20960;20961;20962;20963;20964 21611;21612;21613;21614;21615;21616;21617;21618;21619;21620;21621;21622;21623;21624;21625;21626;21627;21628;21629;21630;21631 21611 21 DCEQAENWMAAR RMMLDQCLELQLFHRDCEQAENWMAAREAF FHRDCEQAENWMAAREAFLNTEDKGDSLDS R D C A R E 3 1 1 1 1 1 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 12 0 1479.5871 A0A0D9SF54;Q13813 Q13813 1453 1464 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 9.9476E-05 91.584 By MS/MS 1 1.2054 1.0122 NaN 1 Median NaN NaN NaN 0 0 Median 1.2054 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5487300 2219600 3267700 0 0 0 5487300 2219600 3267700 0 0 0 0 0 0 0 0 0 0 0 0 4034 264;2838 4197 20965 21632 21632 1 DCFGCLR EWLKDTCGANAKQSRDCFGCLREWCDAFL_ GANAKQSRDCFGCLREWCDAFL________ R D C L R E 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 926.37386 O75531 O75531 76 82 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 0.032496 48.761 By matching By MS/MS 1 1 1.1351 1.151 2.109 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1686 1.1683 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1026 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median 13194000 6144000 7049800 0 0 0 0 0 0 415650 201410 214250 0 0 0 12778000 5942600 6835600 0 0 0 4035 1682 4198 20966;20967 21633 21633 1 DCGATWVVLGHSER TNGAFTGEISPGMIKDCGATWVVLGHSERR KDCGATWVVLGHSERRHVFGESDELIGQKV K D C E R R 1 1 0 1 1 0 1 2 1 0 1 0 0 0 0 1 1 1 0 2 0 0 14 0 1585.7307 P60174;U3KPZ0;U3KQF3;U3KPS5 P60174 123 136 TPI1 Triosephosphate isomerase yes no 2;3 0.0001863 78.692 By MS/MS By MS/MS 1 3 1.1921 1.0319 11.288 4 Median 1.1038 1.0475 NaN 1 0 Median 1.2022 1.0165 13.604 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36782000 16578000 20204000 14109000 6332800 7776100 22673000 10245000 12428000 0 0 0 0 0 0 0 0 0 0 0 0 4036 2523 4199 20968;20969;20970;20971 21634;21635;21636;21637;21638 21638 5 DCGATWVVLGHSERR TNGAFTGEISPGMIKDCGATWVVLGHSERR DCGATWVVLGHSERRHVFGESDELIGQKVA K D C R R H 1 2 0 1 1 0 1 2 1 0 1 0 0 0 0 1 1 1 0 2 0 0 15 1 1741.8318 P60174;U3KPZ0;U3KQF3;U3KPS5 P60174 123 137 TPI1 Triosephosphate isomerase yes no 3 5.3025E-05 73.022 By MS/MS 1 1.2422 1.055 NaN 1 Median NaN NaN NaN 0 0 Median 1.2422 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6998900 3261200 3737800 0 0 0 6998900 3261200 3737800 0 0 0 0 0 0 0 0 0 0 0 0 4037 2523 4200 20972 21639;21640 21640 2 DCLINAAK YINENLIVNTDELGRDCLINAAKTSMSSKI NTDELGRDCLINAAKTSMSSKIIGINGDFF R D C A K T 2 0 1 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 903.4484 P17987;E7ERF2;F5H136;F5H7Y1 P17987 146 153 TCP1 T-complex protein 1 subunit alpha yes no 2 0.011851 56.122 By MS/MS 3 1.2864 1.1049 11.794 3 Plateau NaN NaN NaN 0 0 Median 1.2864 1.1049 11.794 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5391000 2444300 2946700 0 0 0 5391000 2444300 2946700 0 0 0 0 0 0 0 0 0 0 0 0 4038 2051 4201 20973;20974;20975 21641;21642 21642 2 DCLSIPYR RHNLEIIKTLVECWKDCLSIPYRLIFEKFS TLVECWKDCLSIPYRLIFEKFSGKDPNSKD K D C Y R L 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 8 0 1022.4855 P78527 P78527 2247 2254 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.014079 51.787 By MS/MS By matching By matching 1 1 3 1.3162 1.1455 19.494 5 Median NaN NaN NaN 0 0 Median 1.293 1.0845 NaN 1 0 Median 0.71257 0.76558 NaN 1 0 Median 1.3789 1.1957 4.1381 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12581000 5875600 6705600 0 0 0 5709700 2244900 3464700 5187700 2904600 2283100 1683900 726080 957820 0 0 0 0 0 0 4039 2647 4202 20976;20977;20978;20979;20980 21643;21644 21643 2 DCTSALALVPFSIKPLLR AACHLKDGNCRDCIKDCTSALALVPFSIKP SALALVPFSIKPLLRRASAYEALEKYPMAY K D C L R R 2 1 0 1 1 0 0 0 0 1 4 1 0 1 2 2 1 0 0 1 0 0 18 1 2000.1129 Q15785 Q15785 73 90 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 3 0.025492 16.123 By MS/MS 1 1.0646 0.95763 NaN 1 Median NaN NaN NaN 0 0 Median 1.0646 0.95763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4308500 2050000 2258500 0 0 0 4308500 2050000 2258500 0 0 0 0 0 0 0 0 0 0 0 0 4040 2971 4203 20981 21645 21645 1 DCVGPEVEK VELKSLLGKDVLFLKDCVGPEVEKACANPA DVLFLKDCVGPEVEKACANPAAGSVILLEN K D C E K A 0 0 0 1 1 0 2 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 9 0 1031.4594 P00558 P00558 98 106 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.018328 40.882 By MS/MS 2 1.242 1.0924 2.6348 2 Median NaN NaN NaN 0 0 Median 1.242 1.0924 2.6348 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1562700 681820 880860 0 0 0 1562700 681820 880860 0 0 0 0 0 0 0 0 0 0 0 0 4041 1824 4204 20982;20983 21646 21646 1 DDAMLLK QPHDLGKVGEVIVTKDDAMLLKGKGDKAQI VGEVIVTKDDAMLLKGKGDKAQIEKRIQEI K D D L K G 1 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 804.40514 P10809 P10809 353 359 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.014908 73.039 By MS/MS By MS/MS By MS/MS 2 3 1 1.313 1.1875 9.0511 6 Median 1.2221 1.1671 11.777 2 1 Median 1.5202 1.266 5.9497 3 0 Plateau 1.022 1.0303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56749000 23231000 33519000 11567000 5421100 6145600 40643000 15733000 24910000 4540100 2076800 2463300 0 0 0 0 0 0 0 0 0 4042 1947 4205;4206 20984;20985;20986;20987;20988;20989 21647;21648;21649;21650;21651;21652;21653 21649 719 7 DDDFPSLQAIAR AHGDASSHQALHAARDDDFPSLQAIARIIT AARDDDFPSLQAIARIIT____________ R D D A R I 2 1 0 3 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 12 0 1346.6466 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 890 901 ZNF598 Zinc finger protein 598 yes no 2 0.0012256 55.549 By MS/MS By matching 1 1 1.0018 0.97588 30.856 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1313 1.2138 NaN 1 0 Median 0.88717 0.78458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1663800 794440 869310 0 0 0 0 0 0 1485400 708450 776960 178340 85992 92352 0 0 0 0 0 0 4043 3278 4207 20990;20991 21654 21654 1 DDDVPLMWR RRPVLLLHPLGGWTKDDDVPLMWRMKQHAA LGGWTKDDDVPLMWRMKQHAAVLEEGVLNP K D D W R M 0 1 0 3 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 9 0 1145.5175 O43252 O43252 460 468 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.031814 35.88 By matching By MS/MS 1 1 1.0076 0.93397 13.489 2 Median 0.85586 0.84901 NaN 1 0 Median 1.1862 1.0274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7831300 4053900 3777400 3119000 1716600 1402400 4712300 2337300 2375000 0 0 0 0 0 0 0 0 0 0 0 0 4044 1561 4208 20992;20993 21655 21655 1 DDEEEEQKMR ELLSYQPNRGTKRPRDDEEEEQKMRRKQTG TKRPRDDEEEEQKMRRKQTGTRERGRYREE R D D M R R 0 1 0 2 0 1 4 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 10 1 1307.53 Q8WYA6;A0A087WUB9 Q8WYA6 20 29 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.06729 39.022 By matching By MS/MS 1 1 0.90148 0.93819 5.7695 2 Median 0.96119 0.97726 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84548 0.90068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1327100 690910 636160 586290 297430 288870 0 0 0 740780 393490 347290 0 0 0 0 0 0 0 0 0 4045 28 4209 20994;20995 21656 21656 1 DDEENYLDLFSHK LTAEIEKIQKGDSKKDDEENYLDLFSHKNM KKDDEENYLDLFSHKNMKLKERVLIPVKQY K D D H K N 0 0 1 3 0 0 2 0 1 0 2 1 0 1 0 1 0 0 1 0 0 0 13 0 1623.7053 Q07666 Q07666 140 152 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 5.2583E-06 97.456 By MS/MS By matching 3 2 1.2088 1.0604 36.203 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5643 1.5183 47.984 3 0 Median 1.179 1.0122 6.5769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28245000 12925000 15319000 0 0 0 0 0 0 28009000 12801000 15208000 235820 124270 111550 0 0 0 0 0 0 4046 2731 4210 20996;20997;20998;20999;21000 21657;21658;21659;21660 21658 4 DDEVQVVR ELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY K D D V R G 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 958.47197 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3 P61254 52 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0039759 84.244 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1.223 1.0148 13.406 9 Median 1.0102 0.98133 8.5847 2 0 Median 1.0893 0.91459 14.701 2 0 Median NaN NaN NaN 0 0 Median 1.4624 1.2094 8.5269 2 2 Median 1.1328 1.1955 NaN 1 0 Median 1.2559 1.0021 0.69925 2 0 Median 18978000 8635200 10343000 8645400 4008100 4637400 4823200 2331000 2492200 0 0 0 2934800 1220300 1714500 744180 306860 437320 1830400 768950 1061500 4047 2554 4211 21001;21002;21003;21004;21005;21006;21007;21008;21009 21661;21662;21663;21664;21665;21666;21667;21668;21669;21670;21671;21672;21673 21661 13 DDGKLDLSVVENGGLK LRDILLQGLKAIGSKDDGKLDLSVVENGGL DGKLDLSVVENGGLKAKTITKKRKKEIEES K D D L K A 0 0 1 3 0 0 1 3 0 0 3 2 0 0 0 1 0 0 0 2 0 0 16 1 1657.8523 Q99986;H0YJ50;H0YJJ9 Q99986 335 350 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 5.4462E-06 91.961 By MS/MS 1 0.89139 0.93432 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89139 0.93432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6453200 3450200 3003000 0 0 0 0 0 0 6453200 3450200 3003000 0 0 0 0 0 0 0 0 0 4048 3775 4212 21010 21674 21674 1 DDGLFSGDPNWFPK VQRTLMNLGGLAVARDDGLFSGDPNWFPKK RDDGLFSGDPNWFPKKSKENPRNFSDNQLQ R D D P K K 0 0 1 3 0 0 0 2 0 0 1 1 0 2 2 1 0 1 0 0 0 0 14 0 1593.71 P37802;X6RJP6 P37802 140 153 TAGLN2 Transgelin-2 yes no 2 0.00027152 74.841 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.85568 0.7526 15.23 6 Median 0.65634 0.62041 NaN 1 0 Median 0.88394 0.7526 4.2075 2 0 Median 0.89401 0.87622 11.466 2 0 Median 0.82133 0.65918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22679000 11911000 10768000 5386800 3257700 2129200 13307000 6657300 6649900 3879300 1940000 1939200 105920 56142 49775 0 0 0 0 0 0 4049 2269 4213 21011;21012;21013;21014;21015;21016 21675;21676;21677;21678;21679;21680;21681;21682 21681 8 DDGLFSGDPNWFPKK VQRTLMNLGGLAVARDDGLFSGDPNWFPKK DDGLFSGDPNWFPKKSKENPRNFSDNQLQE R D D K K S 0 0 1 3 0 0 0 2 0 0 1 2 0 2 2 1 0 1 0 0 0 0 15 1 1721.8049 P37802;X6RJP6 P37802 140 154 TAGLN2 Transgelin-2 yes no 2;3 0.00074539 48.741 By MS/MS By MS/MS By MS/MS 3 4 1 0.8594 0.80358 12.188 8 Median 0.73319 0.73533 12.867 3 0 Median 0.89302 0.80358 5.8839 4 0 Median 0.98171 0.9949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24515000 12469000 12046000 14970000 7668100 7302400 7833600 3936800 3896800 1711000 863970 847000 0 0 0 0 0 0 0 0 0 4050 2269 4214 21017;21018;21019;21020;21021;21022;21023;21024 21683;21684;21685;21686;21687;21688;21689;21690;21691 21686 9 DDGSTLMEIDGDK PKVDFPTAIGMVVERDDGSTLMEIDGDKGK ERDDGSTLMEIDGDKGKQGGPTYYIDTNAL R D D D K G 0 0 0 4 0 0 1 2 0 1 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1394.5871 O96019;H7C5S0;C9JQT2 O96019 48 60 ACTL6A Actin-like protein 6A yes no 2 5.735E-07 106.29 By MS/MS 1 0.91793 0.89546 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91793 0.89546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7409500 3575200 3834300 0 0 0 0 0 0 7409500 3575200 3834300 0 0 0 0 0 0 0 0 0 4051 1809 4215 21025 21692;21693 21692 2 DDGSTLMEIDGDKGK PKVDFPTAIGMVVERDDGSTLMEIDGDKGK DDGSTLMEIDGDKGKQGGPTYYIDTNALRV R D D G K Q 0 0 0 4 0 0 1 3 0 1 1 2 1 0 0 1 1 0 0 0 0 0 15 1 1579.7036 O96019;H7C5S0;C9JQT2 O96019 48 62 ACTL6A Actin-like protein 6A yes no 2;3 2.7735E-13 142.08 By MS/MS By MS/MS 3 2 1.2986 1.2535 11.73 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0114 1.0542 3.2816 3 2 Plateau 1.3669 1.2983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73474000 33578000 39896000 0 0 0 0 0 0 47638000 22318000 25320000 25836000 11260000 14576000 0 0 0 0 0 0 4052 1809 4216;4217 21026;21027;21028;21029;21030 21694;21695;21696;21697;21698;21699 21696 578 6 DDGSWEVIEGYR KPCNHVLSLSFPIRRDDGSWEVIEGYRAQH IRRDDGSWEVIEGYRAQHSQHRTPCKGGIR R D D Y R A 0 1 0 2 0 0 2 2 0 1 0 0 0 0 0 1 0 1 1 1 0 0 12 0 1424.6208 P00367;P49448 P00367 125 136 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 3.0793E-06 110.14 By MS/MS By matching By MS/MS 1 1 1 1.098 1.1545 16.893 3 Median 0.93397 0.92545 NaN 1 0 Median 1.5211 1.2895 NaN 1 0 Median 1.098 1.1545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11247000 4916600 6330300 4052600 1943900 2108800 5029000 1884400 3144600 2165300 1088400 1076900 0 0 0 0 0 0 0 0 0 4053 1814 4218 21031;21032;21033 21700;21701;21702 21700 3 DDGTGQLLLPLSDAR DERLSYTQLLRRCRRDDGTGQLLLPLSDAR DDGTGQLLLPLSDARKLTFRGLRKQITMEE R D D A R K 1 1 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 15 0 1569.7999 Q15149;H0YDN1 Q15149 4004 4018 PLEC Plectin yes no 2 2.4039E-09 90.653 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4054 2933 4219 21034 21703 21703 1 DDGVFVQEVTQNSPAAR NWQGSGSHGLTIAQRDDGVFVQEVTQNSPA GVFVQEVTQNSPAARTGVVKEGDQIVGATI R D D A R T 2 1 1 2 0 2 1 1 0 0 0 0 0 1 1 1 1 0 0 3 0 0 17 0 1831.8701 Q09666;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4 Q09666 29 45 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.6574E-14 149.26 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 0.84752 0.75761 15.213 7 Median 0.72826 0.70711 9.7569 2 2 Median 0.84752 0.74949 NaN 1 0 Median 0.90173 0.97355 3.9963 2 0 Median 0.85162 0.74629 8.2131 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36360000 18314000 18045000 7468700 4121000 3347700 418450 234350 184090 25598000 12464000 13134000 2874800 1495000 1379800 0 0 0 0 0 0 4055 2749 4220 21035;21036;21037;21038;21039;21040;21041 21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715 21704 12 DDIENMVK REQQIVIQSSGGLSKDDIENMVKNAEKYAE SSGGLSKDDIENMVKNAEKYAEEDRRKKER K D D V K N 0 0 1 2 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 8 0 962.4379 P38646;H0Y8S0 P38646 556 563 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0053943 76.035 By MS/MS By matching 1 1 1.1606 1.0266 19.511 2 Median NaN NaN NaN 0 0 Median 1.4061 1.1784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95797 0.89429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10951000 5003600 5947600 0 0 0 10216000 4671200 5544500 0 0 0 735390 332320 403060 0 0 0 0 0 0 4056 2277 4221 21042;21043 21716;21717 21717 2 DDIIENAPTTHTEEYSGEEK MFWMRVPLVAPEDLRDDIIENAPTTHTEEY NAPTTHTEEYSGEEKTWMWWHNFRTLCDYS R D D E K T 1 0 1 2 0 0 5 1 1 2 0 1 0 0 1 1 3 0 1 0 0 0 20 0 2276.9921 O14744;H0YJX6;G3V580;G3V5L5;G3V2X6 O14744 165 184 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 3 1.0225E-09 85.087 By MS/MS By MS/MS 1 1 0.95942 0.85261 6.2343 2 Median 0.86999 0.81584 NaN 1 0 Median 1.058 0.89103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20338000 8952100 11386000 13054000 5806400 7247200 7284000 3145700 4138400 0 0 0 0 0 0 0 0 0 0 0 0 4057 1492 4222 21044;21045 21718;21719;21720;21721 21719 4 DDIPVFLR DLMIAKITSDEPLTKDDIPVFLRHAELIAS SDEPLTKDDIPVFLRHAELIASTFVDQCKT K D D L R H 0 1 0 2 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 8 0 973.52328 Q9UBB4;B1AHE4;A0A1W2PQD2 Q9UBB4 263 270 ATXN10 Ataxin-10 yes no 2 0.044676 35.88 By matching By matching By MS/MS By matching 1 1 1 1 1.02 1.1497 19.618 4 Linear 0.82968 0.81164 NaN 1 0 Median 1.1371 0.99164 NaN 1 0 Median 1.2222 1.2193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91497 0.8066 NaN 1 0 Median 3407100 1728900 1678200 710550 487420 223140 977230 493090 484140 1404700 605760 798940 0 0 0 0 0 0 314600 142590 172010 4058 4232 4223 21046;21047;21048;21049 21722 21722 1 DDKHGSYEDAVHSGALND ILRIDDLIKLHPESKDDKHGSYEDAVHSGA HGSYEDAVHSGALND_______________ K D D N D - 2 0 1 4 0 0 1 2 2 0 1 1 0 0 0 2 0 0 1 1 0 0 18 1 1928.8137 P17987;E7EQR6;F5H282 P17987 539 556 TCP1 T-complex protein 1 subunit alpha yes no 2;3 3.8765E-13 119.25 By MS/MS By MS/MS By matching 3 3 1 1.0712 0.92775 8.3361 7 Median 1.0712 0.99199 11.893 3 0 Median 1.1114 0.92775 7.2543 3 0 Median 0.91089 0.91493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109080000 49900000 59178000 75664000 34560000 41104000 28451000 12735000 15716000 4963100 2605500 2357600 0 0 0 0 0 0 0 0 0 4059 2051 4224 21050;21051;21052;21053;21054;21055;21056 21723;21724;21725;21726;21727;21728;21729 21725 7 DDLGNTLEK VEAIINPTNADIDLKDDLGNTLEKKGGKEF ADIDLKDDLGNTLEKKGGKEFVEAVLELRK K D D E K K 0 0 1 2 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1003.4822 O75367 O75367 227 235 H2AFY Core histone macro-H2A.1 yes yes 2 0.0024827 71.692 By MS/MS By MS/MS 2 1 1.2371 1.2329 37.946 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6099 1.6101 37.748 2 0 Median 1.2336 1.0092 NaN 1 0 Median 12248000 5158700 7089600 0 0 0 0 0 0 0 0 0 0 0 0 9100100 3943500 5156600 3148200 1215300 1933000 4060 1662 4225 21057;21058;21059 21730;21731;21732 21732 3 DDMIHQLPLLTEK YCFDISFIEQSTEERDDMIHQLPLLTEKQY ERDDMIHQLPLLTEKQYIATIHSRLQDSQL R D D E K Q 0 0 0 2 0 1 1 0 1 1 3 1 1 0 1 0 1 0 0 0 0 0 13 0 1551.7967 Q92621 Q92621 292 304 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.06066 12.146 By MS/MS By matching 1 1 0.99842 1.0006 13.747 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8146 0.90793 NaN 1 0 Median 1.2237 1.1028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625800 1273300 1352500 0 0 0 0 0 0 2462100 1204400 1257700 163720 68888 94835 0 0 0 0 0 0 4061 3547 4226 21060;21061 21733;21734 21733 2 DDNKDIDSEKEAAMEAEIK EINEDEPVKAKKRKRDDNKDIDSEKEAAME DIDSEKEAAMEAEIKAARERAIVPLEARMK R D D I K A 3 0 1 4 0 0 4 0 0 2 0 3 1 0 0 1 0 0 0 0 0 0 19 2 2149.9685 O14776;G3V220 O14776 631 649 TCERG1 Transcription elongation regulator 1 yes no 3 4.4678E-06 62.648 By MS/MS 1 0.82156 0.98722 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82156 0.98722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14288000 5918600 8369700 0 0 0 0 0 0 14288000 5918600 8369700 0 0 0 0 0 0 0 0 0 4062 1494 4227 21062 21735 21735 1 DDNMFQIGK TSRALSSSKQSSSSRDDNMFQIGKMRYVSV QSSSSRDDNMFQIGKMRYVSVRDFKGKVLI R D D G K M 0 0 1 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1066.4753 P53999 P53999 60 68 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 0.00077714 98.523 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 4 3 3 1 1 1.201 1.0067 9.2413 13 Median 1.0725 1.0067 NaN 1 0 Median 1.1981 1.0196 3.4009 4 0 Median 1.2607 1.1963 0.63211 3 0 Plateau 1.2131 0.97632 3.8797 3 0 Plateau 0.98307 1.052 NaN 1 0 Median 1.2113 0.96475 NaN 1 0 Median 136500000 61358000 75146000 56573000 25855000 30718000 9816500 4610900 5205600 42048000 18326000 23723000 19582000 8524200 11058000 1024600 424730 599890 7460000 3617800 3842300 4063 2478 4228;4229 21063;21064;21065;21066;21067;21068;21069;21070;21071;21072;21073;21074;21075 21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749 21737 1163 14 DDPALATYYGSLFK FFKEFWEQKPLLIQRDDPALATYYGSLFKL RDDPALATYYGSLFKLTDLKSLCSRGMYYG R D D F K L 2 0 0 2 0 0 0 1 0 0 2 1 0 1 1 1 1 0 2 0 0 0 14 0 1559.7508 Q8IUF8;D6RCB6 Q8IUF8 69 82 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 2 0.031375 41.283 By MS/MS 1 1.2543 1.2562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2543 1.2562 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5324400 2245000 3079400 0 0 0 0 0 0 5324400 2245000 3079400 0 0 0 0 0 0 0 0 0 4064 3313 4230 21076 21750 21750 1 DDPDGKQEAKPQQAAGMLSPK KLDSSPSVSSTLAAKDDPDGKQEAKPQQAA QEAKPQQAAGMLSPKTGGKEAASGTTPQKS K D D P K T 3 0 0 3 0 3 1 2 0 0 1 3 1 0 3 1 0 0 0 0 0 0 21 2 2210.0637 E7ETY2;A0A3B3IS06;Q13428 Q13428 1239 1259 TCOF1 Treacle protein no no 3;4 0.018215 16.096 By MS/MS By MS/MS 1 2 0.63269 0.64125 23.322 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39705 0.46001 NaN 1 0 Median 0.67098 0.68005 8.3086 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7071900 4277100 2794800 0 0 0 0 0 0 4175100 2545800 1629300 2896800 1731300 1165500 0 0 0 0 0 0 4065 2816;891 4231 21077;21078;21079 21751;21752;21753 21753 3 DDPENDNSELPTAK ALDELMDGDIIVFQKDDPENDNSELPTAKE KDDPENDNSELPTAKEYFRDLYHRVDVIFC K D D A K E 1 0 2 3 0 0 2 0 0 0 1 1 0 0 2 1 1 0 0 0 0 0 14 0 1543.6638 Q93009;H3BND8 Q93009 771 784 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00035014 72.652 By MS/MS By MS/MS By MS/MS 1 1 1 0.84708 0.75519 8.8024 3 Median NaN NaN NaN 0 0 Median 0.84708 0.73385 NaN 1 0 Median 0.80173 0.86529 NaN 1 0 Median 0.89914 0.75519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6997100 3888900 3108200 0 0 0 3323500 1827800 1495700 2283500 1441200 842290 1390000 619840 770210 0 0 0 0 0 0 4066 3574 4232 21080;21081;21082 21754;21755;21756;21757;21758;21759 21759 6 DDPLTNLNTAFDVAEK HRHRPELIDYGKLRKDDPLTNLNTAFDVAE DPLTNLNTAFDVAEKYLDIPKMLDAEDIVG K D D E K Y 2 0 2 3 0 0 1 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 16 0 1761.8421 P12814;H9KV75;G3V2W4;G3V2N5 P12814 199 214 ACTN1 Alpha-actinin-1 yes no 2 0.049505 22.198 By MS/MS By matching 1 1 1.0414 0.97392 33.586 2 Median 1.2455 1.235 NaN 1 0 Median 0.87078 0.76804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5131400 2465100 2666200 2588700 1018500 1570200 2542700 1446700 1096000 0 0 0 0 0 0 0 0 0 0 0 0 4067 1983 4233 21083;21084 21760 21760 1 DDPSKPVHLTAFLGYK KRSSRHRGKVKSFPKDDPSKPVHLTAFLGY DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K D D Y K A 1 0 0 2 0 0 0 1 1 0 2 2 0 1 2 1 1 0 1 1 0 0 16 1 1786.9254 P39023;H7C422;H7C3M2;F8WCR1 P39023 35 50 RPL3 60S ribosomal protein L3 yes no 2;3 3.3651E-05 70.281 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 2 2 2 0.81706 0.7946 18.983 15 Median 0.75184 0.76889 20.916 4 0 Median 0.77005 0.69854 14.917 5 0 Median 0.84419 0.90009 1.7796 2 0 Median 1.0224 0.94024 8.2775 2 0 Median 0.89219 0.94654 8.6657 2 0 Median NaN NaN NaN 0 0 Median 165640000 91296000 74343000 99107000 54680000 44426000 27853000 15245000 12607000 24104000 13286000 10819000 2587000 1259500 1327500 11988000 6824600 5163500 0 0 0 4068 2281 4234 21085;21086;21087;21088;21089;21090;21091;21092;21093;21094;21095;21096;21097;21098;21099 21761;21762;21763;21764;21765;21766;21767;21768;21769;21770;21771;21772 21766 12 DDPVTNLNNAFEVAEK HRHRPELIEYDKLRKDDPVTNLNNAFEVAE DPVTNLNNAFEVAEKYLDIPKMLDAEDIVN K D D E K Y 2 0 3 2 0 0 2 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 16 0 1774.8374 O43707;K7EJH8 O43707 218 233 ACTN4 Alpha-actinin-4 yes no 2 0.0029561 36.303 By MS/MS 1 0.84491 0.8318 NaN 1 Median 0.84491 0.8318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3712500 1999400 1713100 3712500 1999400 1713100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4069 1585 4235 21100 21773;21774 21773 2 DDSFFGETSHNYHK MDYEDDRLRDGERCRDDSFFGETSHNYHKF RDDSFFGETSHNYHKFDSEYERMGRGPGPL R D D H K F 0 0 1 2 0 0 1 1 2 0 0 1 0 2 0 2 1 0 1 0 0 0 14 0 1682.6961 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 232 245 MATR3 Matrin-3 yes no 3 0.00011777 70.438 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1612 1.0039 10.88 6 Median NaN NaN NaN 0 0 Median 1.1754 1.0078 NaN 1 0 Median 0.90572 0.99457 NaN 1 0 Median 1.1671 1.0128 1.7993 2 0 Median 0.77162 0.79729 NaN 1 0 Median 1.3179 1.0992 NaN 1 0 Median 16502000 8505100 7996500 0 0 0 940440 494150 446290 6769700 3742400 3027300 5414800 2516300 2898500 2695400 1468500 1226900 681150 283690 397460 4070 297 4236 21101;21102;21103;21104;21105;21106 21775;21776;21777 21777 3 DDSIEGIYDTLK TNRPQLSSCFLLSMKDDSIEGIYDTLKQCA SMKDDSIEGIYDTLKQCALISKSAGGIGVA K D D L K Q 0 0 0 3 0 0 1 1 0 2 1 1 0 0 0 1 1 0 1 0 0 0 12 0 1367.6456 P23921;E9PL69;E9PP77;H0YCY7 P23921 225 236 RRM1 Ribonucleoside-diphosphate reductase large subunit;Ribonucleoside-diphosphate reductase yes no 2 0.00063696 63.283 By MS/MS By MS/MS 1 1 1.3157 1.2364 19.852 2 Median 1.4078 1.4227 NaN 1 0 Median 1.2296 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9996000 4551600 5444400 1114900 526210 588730 8881000 4025400 4855700 0 0 0 0 0 0 0 0 0 0 0 0 4071 2121 4237 21107;21108 21778;21779;21780;21781 21781 4 DDTDDEIAK DRGTLSGWILSKAKKDDTDDEIAKYDGKWE LSKAKKDDTDDEIAKYDGKWEVEEMKESKL K D D A K Y 1 0 0 4 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 9 0 1020.4247 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7;D6RAQ8 P27824 91 99 CANX Calnexin yes no 2 0.001354 82.452 By matching By MS/MS By MS/MS 1 3 1 1.189 1.0589 11.015 5 Median 1.0436 1.0589 NaN 1 0 Median 1.3555 1.1684 11.615 3 0 Plateau NaN NaN NaN 0 0 Median 1.4395 1.2594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9176700 3866600 5310000 937370 424880 512490 7777800 3249200 4528600 0 0 0 461480 192570 268910 0 0 0 0 0 0 4072 2158 4238 21109;21110;21111;21112;21113 21782;21783;21784;21785 21783 4 DDTHKVDVINFAQNK SEQEEMRAFPGPLAKDDTHKVDVINFAQNK DDTHKVDVINFAQNKAMKCLQNENLIDKES K D D N K A 1 0 2 3 0 1 0 0 1 1 0 2 0 1 0 0 1 0 0 2 0 0 15 1 1742.8588 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5 O15027 1504 1518 SEC16A Protein transport protein Sec16A yes no 3 0.00010844 65.472 By MS/MS By matching 1 1 1.1614 1.1227 16.82 2 Median 1.0317 0.99677 NaN 1 0 Median 1.3075 1.2645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13880000 6172500 7707800 10811000 4962700 5848400 3069100 1209800 1859400 0 0 0 0 0 0 0 0 0 0 0 0 4073 1513 4239 21114;21115 21786;21787 21787 2 DDTHYLLYIYDK WRIRPLPEEMLSYARDDTHYLLYIYDKMRL YARDDTHYLLYIYDKMRLEMWERGNGQPVQ R D D D K M 0 0 0 3 0 0 0 0 1 1 2 1 0 0 0 0 1 0 3 0 0 0 12 0 1557.7351 Q01780 Q01780 439 450 EXOSC10 Exosome component 10 yes yes 2;3 0.0014698 52.579 By matching By MS/MS By matching By matching 1 2 1 1 1.0367 0.9857 33.188 5 Median 0.98246 0.9857 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1959 1.3038 6.5529 2 0 Median 0.66688 0.58563 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0367 0.89437 NaN 1 0 Median 8649200 4052400 4596800 1715800 970530 745260 0 0 0 6659400 2954900 3704500 122860 67343 55516 0 0 0 151070 59587 91479 4074 2691 4240 21116;21117;21118;21119;21120 21788;21789;21790;21791 21789 4 DDTIYEDEDVKEAIR WYYNAAGFNKLGLMRDDTIYEDEDVKEAIR DDTIYEDEDVKEAIRRLPENLYNDRMFRIK R D D I R R 1 1 0 4 0 0 3 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 15 1 1809.8269 P14927;B7Z2R2;E5RHG9 P14927 35 49 UQCRB Cytochrome b-c1 complex subunit 7 yes no 3 0.00010743 53.995 By MS/MS 1 0.63808 0.66544 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63808 0.66544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031300 1878500 1152700 0 0 0 0 0 0 3031300 1878500 1152700 0 0 0 0 0 0 0 0 0 4075 630 4241 21121 21792 21792 1 DDVAPESGDTTVK KKRQQARKTASVLSKDDVAPESGDTTVKKP SKDDVAPESGDTTVKKPESKKEQTPEHGKK K D D V K K 1 0 0 3 0 0 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1332.6045 O76021;J3QSV6 O76021 319 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0020223 49.35 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0394 0.95143 11.119 4 Median NaN NaN NaN 0 0 Median 1.0654 0.91179 NaN 1 0 Median 1.0141 1.0141 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83005 0.79373 NaN 1 0 Median 1.2002 0.99278 NaN 1 0 Median 7165400 3469000 3696400 0 0 0 3783900 1729300 2054600 427680 255880 171800 0 0 0 2530400 1300200 1230200 423480 183590 239890 4076 1716 4242 21122;21123;21124;21125 21793;21794;21795 21793 3 DDVFGYPQQFEDKPALSK SGDEKQDNESNVDPRDDVFGYPQQFEDKPA FGYPQQFEDKPALSKTEDRKEYNIGVLRHL R D D S K T 1 0 0 3 0 2 1 1 0 0 1 2 0 2 2 1 0 0 1 1 0 0 18 1 2082.9898 Q93008 Q93008 1615 1632 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 4.7528E-05 46.159 By MS/MS By MS/MS By matching By matching 3 2 1 1 0.75477 0.7528 58.206 7 Median 0.70976 0.69171 79.785 3 0 Median 0.76368 0.73542 3.3023 2 0 Median 0.8099 0.93308 NaN 1 0 Median 1.1891 1.1046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35304000 22899000 12406000 26549000 18222000 8327700 4879900 2719600 2160300 3679300 1868800 1810500 195710 88526 107180 0 0 0 0 0 0 4077 3573 4243 21126;21127;21128;21129;21130;21131;21132 21796;21797;21798 21796 3 DDWEEKR DGRSATREPPYRVPRDDWEEKRHFRRDSFD EPPYRVPRDDWEEKRHFRRDSFDDRGPSLN R D D K R H 0 1 0 2 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 7 1 976.42502 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 176 182 MATR3 Matrin-3 yes no 2 0.051097 47.067 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.1541 1.1616 13.252 6 Median NaN NaN NaN 0 0 Median 1.066 1.0176 NaN 1 0 Median 0.98903 1.1282 NaN 1 0 Median 1.1989 1.1521 NaN 1 0 Median 1.2513 1.3629 14.96 2 1 Median 1.2706 1.1711 NaN 1 0 Median 7348500 3260900 4087600 0 0 0 1126700 541510 585230 1075900 470710 605240 536420 193030 343390 4389300 1970500 2418800 220070 85178 134890 4078 297 4244 21133;21134;21135;21136;21137;21138 21799;21800 21799 2 DEALQNISADDLPDSASQAAHPQDSAFSYR KEVMGDGESAHDSPRDEALQNISADDLPDS ASQAAHPQDSAFSYRDAKKKLRLALCSADS R D E Y R D 6 1 1 5 0 3 1 0 1 1 2 0 0 1 2 5 0 0 1 0 0 0 30 0 3218.4388 Q14C86;F8W9S7 Q14C86 1089 1118 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 2.5174E-09 45.125 By MS/MS 1 0.79665 0.74915 NaN 1 Median 0.79665 0.74915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9083600 4132000 4951500 9083600 4132000 4951500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4079 2907 4245 21139 21801;21802 21802 2 DEDDADYKPK FVPPKEDIKPLKRPRDEDDADYKPKKIKTE LKRPRDEDDADYKPKKIKTEDTKKEKKRKL R D E P K K 1 0 0 4 0 0 1 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 10 1 1194.5041 P11387 P11387 141 150 TOP1 DNA topoisomerase 1 yes yes 2;3 0.0010703 128.38 By matching By MS/MS By MS/MS By matching By matching 1 4 6 1 1 1.0674 1.0242 20 11 Median 1.6208 1.727 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80983 0.92334 13.106 3 0 Median 1.0692 1.0242 6.2197 5 0 Median 0.98101 1.097 NaN 1 0 Median 1.1698 1.0682 NaN 1 0 Median 49425000 20118000 29307000 216060 91389 124670 0 0 0 32534000 13651000 18883000 15351000 5717900 9632800 1153700 587530 566160 170390 69875 100520 4080 1962 4246 21140;21141;21142;21143;21144;21145;21146;21147;21148;21149;21150;21151;21152 21803;21804;21805;21806;21807;21808;21809;21810;21811;21812 21809 10 DEENNPLETEYGLSVYK TTLVAFPSSSVYPTKDEENNPLETEYGLSV ENNPLETEYGLSVYKDHQTITIQEMPEKAP K D E Y K D 0 0 2 1 0 0 4 1 0 0 2 1 0 0 1 1 1 0 2 1 0 0 17 0 1998.9058 P25205;J3KQ69;A0A499FHX9 P25205 178 194 MCM3 DNA replication licensing factor MCM3 yes no 2 0.044959 21.873 By MS/MS 1 0.97468 1.0157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97468 1.0157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1364500 720270 644270 0 0 0 0 0 0 1364500 720270 644270 0 0 0 0 0 0 0 0 0 4081 2129 4247 21153 21813 21813 1 DEEVHAGLGELLR TASQAKAVLSAEQLRDEEVHAGLGELLRSL LRDEEVHAGLGELLRSLSNSTARNVTWKLG R D E L R S 1 1 0 1 0 0 3 2 1 0 3 0 0 0 0 0 0 0 0 1 0 0 13 0 1436.726 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PQ34 P50454 104 116 SERPINH1 Serpin H1 yes no 3 2.2925E-05 85.554 By matching By MS/MS By matching 1 2 1 1.1701 1.0839 15.117 4 Median NaN NaN NaN 0 0 Median 1.3702 1.2276 NaN 1 0 Median 0.98262 0.99987 19.718 2 0 Median 1.1737 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15313000 7325000 7988000 0 0 0 212280 90160 122120 13483000 6409700 7073200 1617800 825130 792640 0 0 0 0 0 0 4082 2414 4248 21154;21155;21156;21157 21814;21815 21814 2 DEFEGLFK KNFPNAIEHTLQWARDEFEGLFKQPAENVN HTLQWARDEFEGLFKQPAENVNQYLTDPKF R D E F K Q 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 8 0 983.46001 P22314;Q5JRR6 P22314 650 657 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0071131 68.422 By MS/MS By matching By matching 2 1 1 1.1867 1.0886 24.878 4 Median 0.92434 0.89504 13.47 2 0 Median 1.6489 1.4464 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3834 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14552000 6844100 7707800 13461000 6500900 6960300 924320 282320 642000 0 0 0 166460 60906 105560 0 0 0 0 0 0 4083 2100 4249 21158;21159;21160;21161 21816;21817 21817 2 DEFEGLFKQPAENVNQYLTDPK KNFPNAIEHTLQWARDEFEGLFKQPAENVN KQPAENVNQYLTDPKFVERTLRLAGTQPLE R D E P K F 1 0 2 2 0 2 3 1 0 0 2 2 0 2 2 0 1 0 1 1 0 0 22 1 2581.2336 P22314;Q5JRR6 P22314 650 671 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 1.6844E-14 88.755 By MS/MS By matching 1 1 0.83126 0.90878 22.285 2 Median 0.7431 0.77629 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92989 1.0639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19956000 10805000 9151400 18062000 9878800 8182800 0 0 0 1894700 926150 968550 0 0 0 0 0 0 0 0 0 4084 2100 4250 21162;21163 21818;21819 21819 2 DEFLIQASPR DVTAPNTFKTLDSWRDEFLIQASPRDPENF LDSWRDEFLIQASPRDPENFPFVVLGNKID R D E P R D 1 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 10 0 1174.5982 P51149;C9J592 P51149 104 113 RAB7A Ras-related protein Rab-7a yes no 2 0.013194 40.352 By matching By MS/MS 2 4 1.1473 0.96884 30.61 6 Median 1.4506 1.3778 51.881 2 0 Median 1.1473 0.96884 6.9831 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36533000 17519000 19014000 24759000 12101000 12659000 11774000 5417700 6356000 0 0 0 0 0 0 0 0 0 0 0 0 4085 2428 4251 21164;21165;21166;21167;21168;21169 21820 21820 1 DEFRPNLSHTGR GTGTGGESYWGKPFKDEFRPNLSHTGRGIL PFKDEFRPNLSHTGRGILSMANSGPNSNRS K D E G R G 0 2 1 1 0 0 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 12 1 1427.6906 Q13356 Q13356 352 363 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes yes 3 0.032406 21.55 By MS/MS 1 0.87042 0.94011 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87042 0.94011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1081600 519640 561970 0 0 0 0 0 0 1081600 519640 561970 0 0 0 0 0 0 0 0 0 4086 2807 4252 21170 21821 21821 1 DEFSHQVQEWNR NDQTYFEEIKQFYYRDEFSHQVQEWNRQRT YYRDEFSHQVQEWNRQRTMAIERALQQFLY R D E N R Q 0 1 1 1 0 2 2 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 12 0 1573.691 Q7KZ85 Q7KZ85 696 707 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.0015653 58.172 By MS/MS 1 1.095 1.2127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.095 1.2127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3594800 1651500 1943200 0 0 0 0 0 0 3594800 1651500 1943200 0 0 0 0 0 0 0 0 0 4087 3213 4253 21171 21822 21822 1 DEIFAQSK MKDYQRELEEARASRDEIFAQSKESEKKLK EEARASRDEIFAQSKESEKKLKSLEAEILQ R D E S K E 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 8 0 936.45526 P35580 P35580 1669 1676 MYH10 Myosin-10 yes yes 2 0.048311 52.716 By MS/MS 1 0.55146 0.48986 NaN 1 Median NaN NaN NaN 0 0 Median 0.55146 0.48986 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3092200 1970400 1121800 0 0 0 3092200 1970400 1121800 0 0 0 0 0 0 0 0 0 0 0 0 4088 2245 4254 21172 21823 21823 1 DEILLANKK AEIIHHLADLLTDQRDEILLANKKDLEEAE LLTDQRDEILLANKKDLEEAEGRLAAPLLK R D E K K D 1 0 1 1 0 0 1 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1042.6023 P54886 P54886 401 409 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0049009 65.038 By MS/MS By MS/MS 1 1 0.84871 0.89583 6.2467 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75155 0.85712 NaN 1 0 Median 0.95843 0.93629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2641200 1187900 1453400 0 0 0 0 0 0 2000900 887740 1113200 640300 300120 340170 0 0 0 0 0 0 4089 2488 4255 21173;21174 21824;21825;21826 21825 3 DEILPTTPISEQK PKKPLPDHVSIVEPKDEILPTTPISEQKGG PKDEILPTTPISEQKGGKPEPPAMPQPVPT K D E Q K G 0 0 0 1 0 1 2 0 0 2 1 1 0 0 2 1 2 0 0 0 0 0 13 0 1469.7613 P23396;E9PL09;E9PPU1;H0YEU2;E9PSF4 P23396 215 227 RPS3 40S ribosomal protein S3 yes no 2 9.4692E-16 146.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1 2 0.87974 0.78301 25.362 13 Median 0.83014 0.76234 3.2387 3 1 Median 0.87999 0.73714 15.594 3 1 Median 0.84532 0.80382 3.7096 2 0 Median 1.0116 0.84337 5.8001 2 0 Median 1.2883 1.3227 NaN 1 0 Median 0.71201 0.60219 49.329 2 0 Median 223250000 120560000 102700000 65000000 35604000 29397000 69278000 37471000 31807000 70399000 38221000 32178000 7048600 3453900 3594600 4066100 1894100 2172100 7461600 3911800 3549800 4090 2112 4256 21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187 21827;21828;21829;21830;21831;21832;21833;21834;21835;21836;21837;21838;21839;21840;21841;21842;21843;21844;21845;21846;21847;21848 21831 22 DEKDSQGENMFLR STDPREALQYFYFLRDEKDSQGENMFLRCV LRDEKDSQGENMFLRCVSELVIESREFDMI R D E L R C 0 1 1 2 0 1 2 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 13 1 1567.6937 Q8N1F7;H3BVG0 Q8N1F7 556 568 NUP93 Nuclear pore complex protein Nup93 yes no 2;3 4.0862E-07 114.72 By MS/MS By matching 2 1 1.0527 1.1952 11.436 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97889 1.1105 10.402 2 0 Median 1.3538 1.2923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17235000 8353600 8881800 0 0 0 0 0 0 16162000 7926000 8235500 1073800 427530 646300 0 0 0 0 0 0 4091 3356 4257 21188;21189;21190 21849;21850 21849 1 DELADEIANSSGK LAAAERAKRQAQQERDELADEIANSSGKGA ERDELADEIANSSGKGALALEEKRRLEARI R D E G K G 2 0 1 2 0 0 2 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 13 0 1347.6154 P35579 P35579 1704 1716 MYH9 Myosin-9 yes yes 2 6.4335E-05 127.42 By matching By MS/MS By matching 1 2 1 0.95789 0.85814 11.701 4 Median 1.044 0.99834 NaN 1 0 Median 0.88007 0.81335 10.939 2 0 Median NaN NaN NaN 0 0 Median 0.92504 0.83801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16117000 8056700 8060600 2893800 1669600 1224200 12641000 6130500 6510200 0 0 0 582810 256670 326140 0 0 0 0 0 0 4092 2244 4258 21191;21192;21193;21194 21851;21852 21852 2 DELHIVEAEAMNYEGSPIK HQLSLRTVSLGAGAKDELHIVEAEAMNYEG IVEAEAMNYEGSPIKVTLATLKMSVQPTVS K D E I K V 2 0 1 1 0 0 4 1 1 2 1 1 1 0 1 1 0 0 1 1 0 0 19 0 2144.0096 P06748 P06748 55 73 NPM1 Nucleophosmin yes yes 2;3 1.4169E-18 114.28 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 7 4 3 7 1.0142 0.89833 12.29 24 Median NaN NaN NaN 0 0 Median 1.0424 0.90865 6.8205 3 1 Median 0.85355 0.83062 5.2785 7 0 Median 1.0545 0.89547 6.7105 4 0 Median 0.84385 0.96633 7.3702 3 0 Plateau 1.1301 0.90153 18.833 7 0 Median 119000000 59784000 59218000 0 0 0 997130 476490 520640 74788000 38778000 36010000 17961000 9024400 8936300 5221400 2566200 2655300 20035000 8939700 11096000 4093 1877 4259;4260 21195;21196;21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214;21215;21216;21217;21218 21853;21854;21855;21856;21857;21858;21859;21860;21861;21862;21863;21864;21865;21866;21867;21868;21869;21870;21871 21871 643 19 DELIHELK PLLVAYKEDEIPVLKDELIHELKQTLNAIK DEIPVLKDELIHELKQTLNAIKLEEKGVYV K D E L K Q 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 995.52876 A0A087WUT6;O60841 A0A087WUT6 961 968 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.0041451 83.265 By matching By MS/MS 1 2 1.0533 0.88511 3.787 3 Median NaN NaN NaN 0 0 Median 1.0869 0.94353 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0147 0.88368 0.22981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4199100 2097200 2101900 0 0 0 1398000 693970 704040 0 0 0 2801100 1403200 1397900 0 0 0 0 0 0 4094 35 4261 21219;21220;21221 21872;21873 21872 2 DELLAQHAAGALGLPDLVAVLTR VWDVLFSSYLSEARRDELLAQHAAGALGLP AGALGLPDLVAVLTRVIEETEERLSKVSFR R D E T R V 5 1 0 2 0 1 1 2 1 0 6 0 0 0 1 0 1 0 0 2 0 0 23 0 2342.2958 P58107;A0A075B730 P58107 2674 2696 EPPK1 Epiplakin yes no 3 1.4273E-11 51.645 By MS/MS 1 1.0406 0.87781 NaN 1 Median NaN NaN NaN 0 0 Median 1.0406 0.87781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4702100 2182500 2519700 0 0 0 4702100 2182500 2519700 0 0 0 0 0 0 0 0 0 0 0 0 4095 2520 4262 21222 21874;21875 21875 2 DELLPHILPLLK KCSAAALDVLANVYRDELLPHILPLLKELL VYRDELLPHILPLLKELLFHHEWVVKESGI R D E L K E 0 0 0 1 0 0 1 0 1 1 5 1 0 0 2 0 0 0 0 0 0 0 12 0 1399.8439 Q92973 Q92973 400 411 TNPO1 Transportin-1 yes yes 2 0.0010579 57.59 By MS/MS 1 0.89349 0.78231 NaN 1 Median NaN NaN NaN 0 0 Median 0.89349 0.78231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4032100 2023800 2008300 0 0 0 4032100 2023800 2008300 0 0 0 0 0 0 0 0 0 0 0 0 4096 3570 4263 21223 21876;21877 21877 2 DELMAAVR FLLSLPEHRGDAAVRDELMAAVRDNNMAPY RGDAAVRDELMAAVRDNNMAPYYEALCKSL R D E V R D 2 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 8 0 903.4484 Q15008;C9J7B7 Q15008 39 46 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.014501 50.966 By MS/MS 1 1.085 0.93918 NaN 1 Median NaN NaN NaN 0 0 Median 1.085 0.93918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3633400 1855900 1777500 0 0 0 3633400 1855900 1777500 0 0 0 0 0 0 0 0 0 0 0 0 4097 2911 4264 21224 21878;21879 21878 2 DELRETLK LGEALATAVIPQWQKDELRETLKSLKKVMD VIPQWQKDELRETLKSLKKVMDDLDRASKA K D E L K S 0 1 0 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 1 1002.5346 P49588 P49588 813 820 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.014787 101.25 By MS/MS 1 1.0981 1.0134 NaN 1 Median NaN NaN NaN 0 0 Median 1.0981 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18523000 9588700 8934500 0 0 0 18523000 9588700 8934500 0 0 0 0 0 0 0 0 0 0 0 0 4098 2385 4265 21225 21880;21881 21881 2 DELTLEGIK TNKFMTDPIRILVKRDELTLEGIKQFFVAV RILVKRDELTLEGIKQFFVAVEREEWKFDT R D E I K Q 0 0 0 1 0 0 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1016.539 P38919;I3L3H2 P38919 244 252 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0012806 83.265 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1988 1.152 6.2674 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1564 1.1153 NaN 1 0 Median 1.3212 1.1889 NaN 1 0 Median 1.1056 1.0538 NaN 1 0 Median 1.2427 1.0347 NaN 1 0 Median 39452000 17608000 21845000 0 0 0 0 0 0 14254000 6667000 7587000 15440000 6556500 8883700 7402700 3366100 4036600 2355500 1018100 1337400 4099 2278 4266 21226;21227;21228;21229 21882;21883;21884;21885;21886;21887 21887 6 DENLALYVENQFR LNENSYVPREAGSQKDENLALYVENQFREF QKDENLALYVENQFREFKLSKVWRDQHFVK K D E F R E 1 1 2 1 0 1 2 0 0 0 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1609.7736 P02786;G3V0E5 P02786 162 174 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.00018752 81.865 By MS/MS 1 1.1992 1.0391 NaN 1 Median NaN NaN NaN 0 0 Median 1.1992 1.0391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3692300 1755900 1936400 0 0 0 3692300 1755900 1936400 0 0 0 0 0 0 0 0 0 0 0 0 4100 1836 4267 21230 21888;21889 21888 2 DENQSINHQMAQEDAQR GHFERLLVSMCQGNRDENQSINHQMAQEDA NQSINHQMAQEDAQRLYQAGEGRLGTDESC R D E Q R L 2 1 2 2 0 4 2 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 17 0 2012.8606 P20073 P20073 332 348 ANXA7 Annexin A7 yes yes 3 3.4297E-05 49.049 By MS/MS 1 1.0405 0.90039 NaN 1 Median NaN NaN NaN 0 0 Median 1.0405 0.90039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1850400 838320 1012100 0 0 0 1850400 838320 1012100 0 0 0 0 0 0 0 0 0 0 0 0 4101 2073 4268 21231 21890;21891 21890 2 DENSVELTMAEGPYK LVADPPIARLSVSGRDENSVELTMAEGPYK DENSVELTMAEGPYKIILTARPFRLDLLED R D E Y K I 1 0 1 1 0 0 3 1 0 0 1 1 1 0 1 1 1 0 1 1 0 0 15 0 1681.7505 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 134 148 GANAB Neutral alpha-glucosidase AB no no 2 7.0744E-10 140.39 By MS/MS By matching 1 1 0.94876 0.86258 3.8717 2 Median 0.86897 0.83928 NaN 1 0 Median 1.0359 0.88652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20053000 9940200 10112000 15292000 7706800 7585500 4760400 2233500 2527000 0 0 0 0 0 0 0 0 0 0 0 0 4102 2896;951 4269 21232;21233 21892;21893 21892 2 DENYYQLEELAFR EGLIRQLQVDLQILRDENYYQLEELAFRVM LRDENYYQLEELAFRVMRLQDELVTLRLEC R D E F R V 1 1 1 1 0 1 3 0 0 0 2 0 0 1 0 0 0 0 2 0 0 0 13 0 1688.7682 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 491 503 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0038536 42.743 By MS/MS 1 0.8721 0.87393 NaN 1 Median 0.8721 0.87393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1189700 530830 658840 1189700 530830 658840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4103 1220 4270 21234 21894;21895 21895 2 DEPDTNLVALMK ENSVDEVEISVSLAKDEPDTNLVALMKEEG LAKDEPDTNLVALMKEEGVKLLREAMGIYI K D E M K E 1 0 1 2 0 0 1 0 0 0 2 1 1 0 1 0 1 0 0 1 0 0 12 0 1344.6595 O95433;H0YJG7;H0YJU2 O95433 126 137 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.0076442 38.303 By MS/MS By matching 1 1 1.2277 1.1803 17.091 2 Median NaN NaN NaN 0 0 Median 1.227 1.046 NaN 1 0 Median 1.2285 1.3319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11564000 5477400 6087000 0 0 0 8562900 4205500 4357400 3001600 1272000 1729600 0 0 0 0 0 0 0 0 0 4104 1773 4271 21235;21236 21896 21896 1 DEPDWESLIFLAR GDCRSYSYVCGISSKDEPDWESLIFLARLI SKDEPDWESLIFLARLIPRMCHNVNRVVYI K D E A R L 1 1 0 2 0 0 2 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 13 0 1589.7726 P49915 P49915 536 548 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.046987 25.386 By MS/MS By matching 1 1 0.96004 0.90775 1.2371 2 Median 0.9171 0.91573 NaN 1 0 Median 1.005 0.89985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 782130 400810 381320 628980 323790 305190 153160 77023 76132 0 0 0 0 0 0 0 0 0 0 0 0 4105 2405 4272 21237;21238 21897 21897 1 DEPNSTPEKTEQFYR HSIRSDSEDICLFTKDEPNSTPEKTEQFYR DEPNSTPEKTEQFYRKLLNKHGIKTVSQII K D E Y R K 0 1 1 1 0 1 3 0 0 0 0 1 0 1 2 1 2 0 1 0 0 0 15 1 1839.8275 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 101 115 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.00011314 57.328 By MS/MS 1 0.68572 0.70359 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68572 0.70359 NaN 1 0 Median NaN NaN NaN 0 0 Median 8033000 4333600 3699400 0 0 0 0 0 0 0 0 0 0 0 0 8033000 4333600 3699400 0 0 0 4106 1716 4273 21239 21898 21898 1 DEPQEPSNKVPEQQR ERELREHQERHLEQRDEPQEPSNKVPEQQR DEPQEPSNKVPEQQRQITLKTTPASGERGI R D E Q R Q 0 1 1 1 0 3 3 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 15 1 1779.8388 P12270 P12270 1629 1643 TPR Nucleoprotein TPR yes yes 3 0.069922 10.467 By MS/MS By matching 1 1 0.9522 1.0192 42.935 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63394 0.75233 NaN 1 0 Median 1.4302 1.3807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1163400 612220 551150 0 0 0 0 0 0 847770 502280 345490 315600 109940 205660 0 0 0 0 0 0 4107 1978 4274 21240;21241 21899 21899 1 DEPTGEVLSLVGK LVLQADRSLIDRTRRDEPTGEVLSLVGKLE RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R D E G K L 0 0 0 1 0 0 2 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 13 0 1342.698 O75643;A0A494C1A5 O75643 34 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.001603 59.542 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 0.82663 0.89131 66.334 7 Median NaN NaN NaN 0 0 Median 1.0054 0.89131 NaN 1 0 Median 0.82663 0.91161 108.57 3 1 Median 1.0863 0.98603 NaN 1 0 Median 0.71859 0.7585 8.2499 2 2 Median NaN NaN NaN 0 0 Median 37320000 15580000 21740000 0 0 0 6148200 3091800 3056400 24335000 8835500 15500000 1581500 726050 855430 5255200 2926400 2328800 0 0 0 4108 1688 4275 21242;21243;21244;21245;21246;21247;21248 21900;21901;21902;21903;21904;21905;21906 21906 7 DEQEHEFYK LAKDFEKAYKTVIKKDEQEHEFYK______ KTVIKKDEQEHEFYK_______________ K D E Y K - 0 0 0 1 0 1 3 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 9 0 1223.5095 P43686 P43686 410 418 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.00097604 87.476 By MS/MS By MS/MS 1 1 1.0711 0.98574 4.7479 2 Median 0.96947 0.9532 NaN 1 0 Median 1.1835 1.0194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2805600 1333500 1472200 1062300 566330 495990 1743300 767120 976170 0 0 0 0 0 0 0 0 0 0 0 0 4109 2327 4276 21249;21250 21907;21908;21909 21909 3 DEQLLTNVLETLR DSFNATYVQPRRKQRDEQLLTNVLETLRGD QRDEQLLTNVLETLRGDGNVLIAVDTAGRV R D E L R G 0 1 1 1 0 1 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 13 0 1542.8253 Q9P2I0 Q9P2I0 216 228 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 7.4862E-07 112.15 By MS/MS By MS/MS 1 1 1.3179 1.2775 35.079 2 Median NaN NaN NaN 0 0 Median 1.8559 1.6371 NaN 1 0 Median 0.93594 0.99684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7875400 3615600 4259800 0 0 0 1351500 338510 1013000 6523900 3277000 3246800 0 0 0 0 0 0 0 0 0 4110 4223 4277 21251;21252 21910;21911;21912 21911 3 DEQQISAAVEK EAVGGKALPCIVDVRDEQQISAAVEKAIKK VDVRDEQQISAAVEKAIKKFGGIDILVNNA R D E E K A 2 0 0 1 0 2 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 11 0 1216.5935 Q6YN16 Q6YN16 77 87 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 2 0.040433 27.772 By MS/MS By matching 1 1 1.1595 1.0036 15.595 2 Median NaN NaN NaN 0 0 Median 1.3016 1.1205 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.033 0.89878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4261200 1873400 2387800 0 0 0 1802100 786510 1015600 0 0 0 2459100 1086900 1372200 0 0 0 0 0 0 4111 3195 4278 21253;21254 21913 21913 1 DESLKVDEHLAK GDFRKALLTLADGRRDESLKVDEHLAKQDA GRRDESLKVDEHLAKQDAQILYKAGENRWG R D E A K Q 1 0 0 2 0 0 2 0 1 0 2 2 0 0 0 1 0 0 0 1 0 0 12 1 1382.7042 P12429;D6RA82;D6RFJ9 P12429 165 176 ANXA3 Annexin A3;Annexin yes no 3 2.1131E-06 118.87 By MS/MS 1 1.0561 0.95091 NaN 1 Median NaN NaN NaN 0 0 Median 1.0561 0.95091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11228000 5584700 5643100 0 0 0 11228000 5584700 5643100 0 0 0 0 0 0 0 0 0 0 0 0 4112 1981 4279 21255 21914 21914 1 DESSPYAAMLAAQDVAQR TICRVTGGMKVKADRDESSPYAAMLAAQDV SPYAAMLAAQDVAQRCKELGITALHIKLRA R D E Q R C 5 1 0 2 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 18 0 1921.884 P62263;A0A2R8Y811;E5RH77 P62263 67 84 RPS14 40S ribosomal protein S14 yes no 2;3 7.193E-11 98.942 By MS/MS By matching By MS/MS 4 2 1 0.96605 0.87661 20.483 7 Median 0.9125 0.88286 26.401 4 0 Median 1.0067 0.83793 6.3816 2 0 Median 0.97702 0.98943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63975000 32530000 31445000 53132000 27272000 25860000 8658000 4219300 4438700 2184600 1037900 1146700 0 0 0 0 0 0 0 0 0 4113 386 4280;4281 21256;21257;21258;21259;21260;21261;21262 21915;21916;21917;21918;21919;21920;21921;21922 21920 180 8 DESTNVDMSLAQR GHFQRLLISLSQGNRDESTNVDMSLAQRDA NRDESTNVDMSLAQRDAQELYAAGENRLGT R D E Q R D 1 1 1 2 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 13 0 1464.6515 P50995 P50995 347 359 ANXA11 Annexin A11 yes yes 2 0.0038536 42.743 By MS/MS 1 1.4073 1.2131 NaN 1 Median NaN NaN NaN 0 0 Median 1.4073 1.2131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2168200 760240 1408000 0 0 0 2168200 760240 1408000 0 0 0 0 0 0 0 0 0 0 0 0 4114 2425 4282 21263 21923 21923 1 DETEFYLGK REHTALLKIEGVYARDETEFYLGKRCAYVY EGVYARDETEFYLGKRCAYVYKAKNNTVTP R D E G K R 0 0 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1100.5026 P18077;F8WBS5;F8WB72;C9K025 P18077 37 45 RPL35A 60S ribosomal protein L35a yes no 2 0.0035603 64.265 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 1.1764 1.0828 15.936 7 Median 1.1764 1.1033 21.083 3 0 Median 1.0421 0.85761 NaN 1 1 Median 1.1323 1.0828 NaN 1 0 Median 1.2497 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4205 1.1679 NaN 1 0 Median 55481000 25572000 29909000 18045000 8379700 9665400 14049000 6829700 7219600 13078000 6107900 6969600 1152100 412910 739170 0 0 0 9156900 3841500 5315400 4115 2054 4283 21264;21265;21266;21267;21268;21269;21270;21271 21924;21925;21926;21927;21928;21929;21930;21931;21932 21925 9 DETEFYLGKR REHTALLKIEGVYARDETEFYLGKRCAYVY GVYARDETEFYLGKRCAYVYKAKNNTVTPG R D E K R C 0 1 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 10 1 1256.6037 P18077;F8WBS5;F8WB72;C9K025 P18077 37 46 RPL35A 60S ribosomal protein L35a yes no 2;3 1.1601E-15 190.08 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 6 2 2 1 1 2 1.1419 1.077 23.626 14 Median 1.0324 1.0365 7.505 6 2 Median 1.1928 1.0532 6.5296 2 0 Median 1.1799 1.2246 3.9693 2 0 Median 0.52923 0.60564 NaN 1 0 Median 1.5309 1.7319 NaN 1 0 Median 1.683 1.346 5.9994 2 0 Median 110200000 50878000 59327000 40840000 19263000 21576000 39845000 19113000 20731000 21749000 9910700 11839000 591080 304220 286870 4064300 1107900 2956400 3115000 1178400 1936600 4116 2054 4284 21272;21273;21274;21275;21276;21277;21278;21279;21280;21281;21282;21283;21284;21285 21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950 21933 17 DETGELSSADEKR NMDSMPELQKLQQLKDETGELSSADEKRYR LKDETGELSSADEKRYRALKRTAERELLMN K D E K R Y 1 1 0 2 0 0 3 1 0 0 1 1 0 0 0 2 1 0 0 0 0 0 13 1 1435.6427 Q92900 Q92900 593 605 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0013893 61.353 By MS/MS 1 0.98233 0.93655 NaN 1 Median NaN NaN NaN 0 0 Median 0.98233 0.93655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1260200 563670 696560 0 0 0 1260200 563670 696560 0 0 0 0 0 0 0 0 0 0 0 0 4117 3564 4285 21286 21951;21952 21952 2 DETNYGIPQR SASRDKTIIMWKLTRDETNYGIPQRALRGH WKLTRDETNYGIPQRALRGHSHFVSDVVIS R D E Q R A 0 1 1 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1191.552 P63244;D6RAC2;D6RHH4;D6REE5;D6R9L0;D6R9Z1;D6RFX4;D6RFZ9;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909 P63244 48 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 1.5972E-15 187 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.82064 0.73469 29.331 5 Median 0.4152 0.38846 NaN 1 0 Median 0.73608 0.61199 NaN 1 0 Median 0.82064 0.79674 NaN 1 0 Median 0.90099 0.75185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88057 0.73469 NaN 1 0 Median 118320000 66289000 52027000 21591000 15483000 6108100 39612000 22389000 17222000 33163000 17121000 16042000 23611000 11128000 12483000 0 0 0 340220 167580 172640 4118 2624 4286 21287;21288;21289;21290;21291 21953;21954;21955;21956;21957;21958 21955 6 DETSGLHLLPLPESAPALPTEEQVQR QGRTSYAQLLEECPRDETSGLHLLPLPESA PESAPALPTEEQVQRSLQAVPGAKDGTSLW R D E Q R S 2 1 0 1 0 2 4 1 1 0 5 0 0 0 4 2 2 0 0 1 0 0 26 0 2826.44 P58107;A0A075B730 P58107 1105 1130 EPPK1 Epiplakin yes no 3 3.1964E-05 31.819 By MS/MS By MS/MS 1 2 0.58323 0.55544 14.167 3 Median 0.58323 0.57932 NaN 1 0 Median 0.55804 0.49718 15.67 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10254000 5921600 4332700 6797600 3736300 3061300 3456700 2185300 1271400 0 0 0 0 0 0 0 0 0 0 0 0 4119 2520 4287 21292;21293;21294 21959;21960 21959 2 DEVLANR ILSWTGLATPTGVPKDEVLANRLLNFLMKH ATPTGVPKDEVLANRLLNFLMKHVFHPKRA K D E N R L 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 815.41373 P78527 P78527 2208 2214 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.040961 44.611 By MS/MS 1 0.84678 0.94838 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84678 0.94838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 759660 402270 357380 0 0 0 0 0 0 759660 402270 357380 0 0 0 0 0 0 0 0 0 4120 2647 4288 21295 21961 21961 1 DEVTGEAALR LQHPGGATPVCVYTRDEVTGEAALRGTTLQ CVYTRDEVTGEAALRGTTLQSLGLTGGSAT R D E L R G 2 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1059.5197 Q9BZE9;J3QL04;J3QR12 Q9BZE9 143 152 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 2 0.011023 57.859 By MS/MS 1 1.064 0.92317 NaN 1 Median NaN NaN NaN 0 0 Median 1.064 0.92317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2981400 1452000 1529500 0 0 0 2981400 1452000 1529500 0 0 0 0 0 0 0 0 0 0 0 0 4121 3899 4289 21296 21962 21962 1 DEYIEQLK EKGLKVLKWNFTTPRDEYIEQLKTQMSSCV WNFTTPRDEYIEQLKTQMSSCVAKWLQDEM R D E L K T 0 0 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1036.5077 Q14008 Q14008 1190 1197 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.015729 69.998 By MS/MS 1 0.4414 0.3947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4414 0.3947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26267000 20717000 5549500 0 0 0 0 0 0 0 0 0 26267000 20717000 5549500 0 0 0 0 0 0 4122 2850 4290 21297 21963 21963 1 DFADILVQPTLEENK EEEREFRKQFPLHEKDFADILVQPTLEENK DFADILVQPTLEENKGTSDGQEEEAGTNPA K D F N K G 1 0 1 2 0 1 2 0 0 1 2 1 0 1 1 0 1 0 0 1 0 0 15 0 1730.8727 Q9NU22 Q9NU22 3584 3598 MDN1 Midasin yes yes 2 0.00011527 79.659 By matching By MS/MS 2 1 0.87989 0.80251 60.515 3 Median NaN NaN NaN 0 0 Median 0.56468 0.4972 67.706 2 0 Median 0.87989 0.94397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8239100 4430900 3808200 0 0 0 1310700 885320 425400 6928400 3545600 3382800 0 0 0 0 0 0 0 0 0 4123 4112 4291 21298;21299;21300 21964;21965 21965 2 DFAPPGQQK VALILLHSALAQSRRDFAPPGQQKREAPVD LAQSRRDFAPPGQQKREAPVDVLTQIGRSV R D F Q K R 1 0 0 1 0 2 0 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 9 0 986.48214 Q9BVC6 Q9BVC6 38 46 TMEM109 Transmembrane protein 109 yes yes 2 0.031814 35.88 By MS/MS 1 0.92481 0.80536 NaN 1 Median NaN NaN NaN 0 0 Median 0.92481 0.80536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 921810 439220 482580 0 0 0 921810 439220 482580 0 0 0 0 0 0 0 0 0 0 0 0 4124 3851 4292 21301 21966 21966 1 DFASEVSNVLNK VSNCGKIFHLEVCSRDFASEVSNVLNKGHP CSRDFASEVSNVLNKGHPKVCEKLKALMVE R D F N K G 1 0 2 1 0 0 1 0 0 0 1 1 0 1 0 2 0 0 0 2 0 0 12 0 1321.6514 Q92783 Q92783 88 99 STAM Signal transducing adapter molecule 1 yes yes 2 0.048396 25.808 By MS/MS By matching 1 2 1.1147 1.0279 16.324 3 Plateau 1.2215 1.1831 NaN 1 0 Median 0.99766 0.89172 0.22093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2255000 1040500 1214500 1210500 495190 715290 1044500 545280 499210 0 0 0 0 0 0 0 0 0 0 0 0 4125 3556 4293 21302;21303;21304 21967 21967 1 DFATLYQGWGVSGPGLEHR KRLDILNIFKTYIPKDFATLYQGWGVSGPG LYQGWGVSGPGLEHRGTLRTQARPGEFVCI K D F H R G 1 1 0 1 0 1 1 4 1 0 2 0 0 1 1 1 1 1 1 1 0 0 19 0 2089.0017 Q92618;A0A087WUJ4 Q92618 1068 1086 ZNF516 Zinc finger protein 516 yes no 3 0.021702 15.09 By MS/MS 1 1.0836 1.177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0836 1.177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1496800 757700 739050 0 0 0 0 0 0 1496800 757700 739050 0 0 0 0 0 0 0 0 0 4126 3545 4294 21305 21968 21968 1 DFAVSTVPVSGPSHLR WTNHRGAEIVADTFRDFAVSTVPVSGPSHL FAVSTVPVSGPSHLRGLCGMGGPRTVVAGS R D F L R G 1 1 0 1 0 0 0 1 1 0 1 0 0 1 2 3 1 0 0 3 0 0 16 0 1667.8631 O95865;H0Y7N1;A0A140T971;Q5SSV3;Q5SRR8 O95865 158 173 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes no 3 3.6028E-05 53.403 By MS/MS By matching 1 1 1.2206 1.0933 48.98 2 Median 0.82802 0.77324 NaN 1 0 Median 1.7994 1.5458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8682700 4728500 3954200 8181700 4545500 3636200 500990 182940 318050 0 0 0 0 0 0 0 0 0 0 0 0 4127 1801 4295 21306;21307 21969 21969 1 DFAYGETDPLIR LWPLRDLDTGEEVTRDFAYGETDPLIRKCM VTRDFAYGETDPLIRKCMLLPWAPTDMLDL R D F I R K 1 1 0 2 0 0 1 1 0 1 1 0 0 1 1 0 1 0 1 0 0 0 12 0 1395.667 Q14166 Q14166 241 252 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.0033761 70.1 By MS/MS By MS/MS By matching 2 1 1 0.89711 0.85851 25.676 4 Median 0.68627 0.66714 25.385 2 1 Median 1.0655 0.92325 NaN 1 0 Median 0.95402 0.99332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14730000 8431400 6298500 11326000 6902400 4424000 2390800 1142400 1248500 1012800 386700 626070 0 0 0 0 0 0 0 0 0 4128 2861 4296 21308;21309;21310;21311 21970;21971 21970 2 DFDTALK ALKEKELGNDAYKKKDFDTALKHYDKAKEL GNDAYKKKDFDTALKHYDKAKELDPTNMTY K D F L K H 1 0 0 2 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 7 0 808.39668 P31948 P31948 240 246 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.015285 71.949 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2735 0.96295 19.741 4 Linear 1.1908 1.1201 NaN 1 0 Median 1.21 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.03 0.92049 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82849 0.70604 NaN 1 0 Median 49624000 21369000 28255000 10835000 4665400 6169200 34978000 14963000 20015000 0 0 0 3271400 1450100 1821300 0 0 0 540150 291180 248970 4129 2212 4297 21312;21313;21314;21315 21972;21973;21974 21972 3 DFEEYPEHR IFDAVFECTLNMINKDFEEYPEHRTNFFLL LNMINKDFEEYPEHRTNFFLLLQAVNSHCF K D F H R T 0 1 0 1 0 0 3 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 9 0 1220.5098 O14980 O14980 837 845 XPO1 Exportin-1 yes yes 2;3 0.00050786 119.27 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.9923 0.83174 19.024 5 Median 0.7119 0.69674 NaN 1 0 Median 1.0743 0.90973 12.675 2 0 Median 1.0546 1.1231 NaN 1 0 Median 0.91361 0.78621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14854000 7251600 7602900 2675800 1660600 1015200 10691000 4771800 5919600 957260 560750 396510 529960 258440 271520 0 0 0 0 0 0 4130 1510 4298 21316;21317;21318;21319;21320 21975;21976;21977;21978 21977 4 DFEIIDNHDYSYTVK LDVQFAGTAKGEVVRDFEIIDNHDYSYTVK DFEIIDNHDYSYTVKYTAVQQGNMAVTVTY R D F V K Y 0 0 1 3 0 0 1 0 1 2 0 1 0 1 0 1 1 0 2 1 0 0 15 0 1857.8421 Q14315 Q14315 917 931 FLNC Filamin-C yes yes 2 2.6464E-09 100.93 By MS/MS By matching 1 1 1.228 1.1482 26.229 2 Median 1.3886 1.3822 NaN 1 0 Median 1.0859 0.95386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6885000 3078300 3806700 5563800 2405100 3158700 1321200 673190 648010 0 0 0 0 0 0 0 0 0 0 0 0 4131 2871 4299 21321;21322 21979 21979 1 DFEQPLAISR LQGPGPWGFRLVGGKDFEQPLAISRVTPGS LVGGKDFEQPLAISRVTPGSKAALANLCIG K D F S R V 1 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 10 0 1174.5982 O00151 O00151 23 32 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 0.00034968 96.331 By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1.1281 1.0838 74.299 8 Median 1.2825 1.2848 57.184 2 0 Median 0.53445 0.47282 102.24 2 0 Median 1.3458 1.5358 85.207 2 0 Median 1.756 1.4476 NaN 1 0 Median 1.1347 1.2057 NaN 1 0 Median NaN NaN NaN 0 0 Median 40917000 21206000 19711000 21001000 10526000 10475000 7393900 4122000 3271900 8531900 4654500 3877400 490990 182730 308250 3498800 1720200 1778600 0 0 0 4132 1442 4300 21323;21324;21325;21326;21327;21328;21329;21330 21980;21981;21982 21982 3 DFESHITSYK KALSTLRQKIRKYNRDFESHITSYKQNPEQ RKYNRDFESHITSYKQNPEQSADEDAEKNE R D F Y K Q 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 2 1 0 1 0 0 0 10 0 1225.5615 Q99613;B5ME19;H3BPE3 Q99613 151 160 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2;3 2.275E-05 145.72 By MS/MS By MS/MS By MS/MS 2 2 2 1.2126 1.0999 26.474 6 Median 1.1737 1.1423 0.81877 2 0 Median 1.2417 1.0536 1.5609 2 0 Median NaN NaN NaN 0 0 Median 1.4211 1.2085 57.542 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52612000 22919000 29693000 17401000 7841600 9559200 29745000 13014000 16731000 0 0 0 5466100 2063300 3402800 0 0 0 0 0 0 4133 3757 4301 21331;21332;21333;21334;21335;21336 21983;21984;21985;21986;21987;21988;21989;21990 21984 8 DFFHGLR SVHGMPFSAMENDVRDFFHGLRVDAVHLLK SAMENDVRDFFHGLRVDAVHLLKDHVGRNN R D F L R V 0 1 0 1 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 890.43989 Q9NTZ6 Q9NTZ6 322 328 RBM12 RNA-binding protein 12 yes yes 2 0.051961 39.218 By MS/MS By matching By MS/MS 1 1 1 1.1579 1.1747 17.949 3 Median 0.91736 0.88709 NaN 1 0 Median 1.3394 1.1747 NaN 1 0 Median 1.1579 1.239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7330200 3347400 3982800 3894900 1819300 2075600 1069100 450310 618750 2366200 1077700 1288400 0 0 0 0 0 0 0 0 0 4134 4111 4302 21337;21338;21339 21991;21992 21992 2 DFFLANASR VPPELVGQPAVHLKRDFFLANASRARSEQF AVHLKRDFFLANASRARSEQFINLREVSTR R D F S R A 2 1 1 1 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 9 0 1039.5087 P07384 P07384 463 471 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0027536 93.374 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.5949 1.3748 17.171 4 Median NaN NaN NaN 0 0 Median 1.4806 1.2843 NaN 1 0 Median 0.98614 1.0304 NaN 1 0 Median 1.718 1.4717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7604 1.492 NaN 1 0 Median 8761900 3942200 4819700 0 0 0 2552900 1033100 1519800 5383700 2608800 2774900 737660 268790 468870 0 0 0 87658 31548 56111 4135 1886 4303 21340;21341;21342;21343;21344 21993;21994;21995 21995 3 DFFQSYGNVVELR FIGNLPHEVDKSELKDFFQSYGNVVELRIN LKDFFQSYGNVVELRINSGGKLPNFGFVVF K D F L R I 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 1 0 0 1 2 0 0 13 0 1572.7573 Q13283 Q13283 358 370 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 7.4802E-07 118.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 1 1.1053 0.93259 28.565 7 Median 1.1053 1.073 NaN 1 0 Median 0.98081 0.8495 32.43 4 2 Median 1.2025 1.195 NaN 1 0 Median 1.1144 0.93259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37705000 18192000 19513000 5271500 2528200 2743300 10716000 5359800 5355700 20800000 9899700 10901000 917890 404120 513780 0 0 0 0 0 0 4136 2803 4304 21345;21346;21347;21348;21349;21350;21351 21996;21997;21998;21999;22000;22001;22002 21997 7 DFGSAAVSLQVAAPYSKPSMTLEPNK RVADEGSFTCFVSIRDFGSAAVSLQVAAPY AAPYSKPSMTLEPNKDLRPGDTVTITCSSY R D F N K D 4 0 1 1 0 1 1 1 0 0 2 2 1 1 3 4 1 0 1 2 0 0 26 1 2707.3527 A0A0C4DGH0;Q5ZPR3;H0YK40;H0YK59;H0YL10 A0A0C4DGH0 200 225 CD276 CD276 antigen yes no 3 0.011704 18.298 By MS/MS 1 0.60347 0.62372 NaN 1 Median 0.60347 0.62372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473000 1591700 881360 2473000 1591700 881360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4137 247 4305 21352 22003 22003 1 DFGSFDKFKEK GGGEPKGELLEAIKRDFGSFDKFKEKLTAA AIKRDFGSFDKFKEKLTAASVGVQGSGWGW R D F E K L 0 0 0 2 0 0 1 1 0 0 0 3 0 3 0 1 0 0 0 0 0 0 11 2 1346.6507 P04179;F5H3C5;F5H4R2;F5GYZ5;G8JLJ2 P04179 124 134 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 3 0.014611 66.267 By MS/MS 1 0.63243 0.61887 NaN 1 Median NaN NaN NaN 0 0 Median 0.63243 0.61887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7729200 6128200 1601000 0 0 0 7729200 6128200 1601000 0 0 0 0 0 0 0 0 0 0 0 0 4138 1845 4306 21353 22004 22004 1 DFHVDEQTTVK GKWEKPFEMKHTTERDFHVDEQTTVKVPMM TTERDFHVDEQTTVKVPMMNRLGMFDLHYC R D F V K V 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1317.6201 CON__P34955 CON__P34955 229 239 yes yes 2;3 1.8801E-27 162.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 12 2 1 1 0.05367 0.045818 118.83 15 Median 0.055248 0.051975 189.21 2 2 Median 0.05367 0.045818 108.27 11 11 Median 0.044452 0.044812 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.39876 0.38151 NaN 1 1 Median NaN NaN NaN 0 0 Median 156060000 151070000 4993700 43431000 42412000 1019700 97871000 94562000 3308800 10170000 9918100 251650 2196800 2196800 0 2389900 1976400 413460 0 0 0 + 4139 763 4307 21354;21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371;21372;21373;21374 22005;22006;22007;22008;22009;22010;22011;22012;22013;22014;22015;22016;22017;22018;22019;22020;22021;22022;22023;22024;22025;22026;22027 22007 23 DFHVDEQTTVKVPMMNR GKWEKPFEMKHTTERDFHVDEQTTVKVPMM HVDEQTTVKVPMMNRLGMFDLHYCDKLASW R D F N R L 0 1 1 2 0 1 1 0 1 0 0 1 2 1 1 0 2 0 0 3 0 0 17 1 2045.9663 CON__P34955 CON__P34955 229 245 yes yes 4 8.472E-06 64.52 By MS/MS 1 0.088673 0.089116 NaN 1 Median 0.088673 0.089116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4660300 4425900 234400 4660300 4425900 234400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4140 763 4308 21375 22028 22028 1 DFIDSLGLLHEQNMAK SAKLASYVKFYQNNKDFIDSLGLLHEQNMA FIDSLGLLHEQNMAKMRLLTFMGMAVENKE K D F A K M 1 0 1 2 0 1 1 1 1 1 3 1 1 1 0 1 0 0 0 0 0 0 16 0 1829.8982 Q7L2H7;H0YCQ8 Q7L2H7 261 276 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 0.039841 23.376 By MS/MS 1 1.067 0.91652 NaN 1 Median NaN NaN NaN 0 0 Median 1.067 0.91652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3687100 1701200 1985900 0 0 0 3687100 1701200 1985900 0 0 0 0 0 0 0 0 0 0 0 0 4141 3221 4309 21376 22029 22029 1 DFIIQTGDPTGTGR KIKYYNYCLIHNVQRDFIIQTGDPTGTGRG RDFIIQTGDPTGTGRGGESIFGQLYGDQAS R D F G R G 0 1 0 2 0 1 0 3 0 2 0 0 0 1 1 0 3 0 0 0 0 0 14 0 1476.7209 Q8WUA2 Q8WUA2 48 61 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 2 6.14E-15 138.25 By MS/MS By MS/MS 1 2 0.68275 0.68952 12.55 3 Median 0.86947 0.83685 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.66908 0.67538 2.932 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24739000 13758000 10980000 6759200 3541900 3217400 0 0 0 17980000 10217000 7763100 0 0 0 0 0 0 0 0 0 4142 3486 4310 21377;21378;21379 22030;22031;22032 22031 3 DFILPISDVR HLSLSHQPDKKGVPRDFILPISDVRASIGA KGVPRDFILPISDVRASIGAGFIYPLVGTM R D F V R A 0 1 0 2 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1173.6394 A0A087WVM4;B7ZM99;Q6UB35;Q4VXM0;Q4VXM1 A0A087WVM4 861 870 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.046332 29.162 By MS/MS By matching By matching 1 1 1 1.0087 0.8962 8.983 3 Median 0.91108 0.8962 NaN 1 0 Median 1.0087 0.86282 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.147 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4745300 2172200 2573100 2334000 962440 1371600 2367300 1193200 1174200 0 0 0 43884 16561 27324 0 0 0 0 0 0 4143 43 4311 21380;21381;21382 22033;22034 22033 2 DFIYSLHSTER KKEPMEALNTAQGARDFIYSLHSTERSCLL QGARDFIYSLHSTERSCLLKELHRFESIAI R D F E R S 0 1 0 1 0 0 1 0 1 1 1 0 0 1 0 2 1 0 1 0 0 0 11 0 1366.6517 Q6PI78 Q6PI78 74 84 TMEM65 Transmembrane protein 65 yes yes 2;3 0.00012194 116.52 By MS/MS By MS/MS 2 2 1.4182 1.2852 29.8 4 Median 1.0077 0.98058 15.344 2 1 Median 1.9146 1.5955 7.6799 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25881000 14517000 11363000 23373000 13660000 9712400 2507700 856930 1650800 0 0 0 0 0 0 0 0 0 0 0 0 4144 3172 4312 21383;21384;21385;21386 22035;22036;22037;22038 22036 4 DFKENNVVFNR GVVLHKDSKWYQQWKDFKENNVVFNRFFEM QQWKDFKENNVVFNRFFEMKMKYDESDNAF K D F N R F 0 1 3 1 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 2 0 0 11 1 1380.6786 O43615;M0QXU7 O43615 247 257 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2;3 0.0010653 112.84 By MS/MS By MS/MS 2 1 0.86593 0.92785 43.665 3 Median 0.77014 0.82514 16.591 2 1 Median NaN NaN NaN 0 0 Median 1.5068 1.7096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17992000 9059600 8932000 15903000 8308700 7594100 0 0 0 2088800 750890 1337900 0 0 0 0 0 0 0 0 0 4145 1577 4313 21387;21388;21389 22039;22040 22039 2 DFKPGDLIFAK ______________________________ ______________________________ R D F A K M 1 0 0 2 0 0 0 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 11 1 1249.6707 O75475 O75475 4 14 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 0.0081797 47.96 By MS/MS By matching By matching By matching 4 2 3 3 0.9229 0.91619 76.258 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84074 0.90491 10.32 4 0 Median 0.32827 0.30371 198.31 2 0 Median 0.78226 0.83462 15.175 3 0 Median 1.1412 1.0171 26.476 3 0 Median 101240000 54555000 46683000 0 0 0 0 0 0 87364000 46771000 40593000 1674000 1506500 167440 8850600 4744100 4106500 3349300 1533200 1816100 4146 1674 4314 21390;21391;21392;21393;21394;21395;21396;21397;21398;21399;21400;21401 22041;22042;22043;22044;22045 22042 5 DFLAGGIAAAISK ______________________________ AKDFLAGGIAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 2 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1232.6765 P12236 P12236 11 23 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 2 2.5739E-05 93.345 By MS/MS By MS/MS By matching By matching By matching 3 7 1 1 2 1.2867 1.2463 28.899 14 Median 1.2202 1.2257 5.7617 3 0 Median 1.4151 1.2573 27.802 7 0 Median 1.1905 1.3115 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7538 1.7895 NaN 1 0 Median 0.97133 0.81225 37.651 2 0 Median 119930000 51992000 67939000 69627000 30527000 39100000 45892000 19562000 26330000 1207100 551890 655220 0 0 0 1910700 729260 1181400 1294400 622070 672360 4147 1977 4315 21402;21403;21404;21405;21406;21407;21408;21409;21410;21411;21412;21413;21414;21415 22046;22047;22048;22049;22050;22051;22052;22053 22053 8 DFLAGGVAAAISK ______________________________ AKDFLAGGVAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1218.6608 P05141 P05141 11 23 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00035627 75.819 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 1 2 2 1.2016 1.1664 22.676 16 Median 1.0824 0.99349 8.1354 6 0 Median 1.6526 1.4815 21.552 5 1 Median 1.2871 1.3865 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2446 1.2931 13.353 2 0 Median 1.151 0.9528 6.3221 2 2 Median 668680000 288030000 380640000 460920000 209220000 251700000 174050000 65368000 108680000 4561700 1890900 2670800 0 0 0 22437000 9169800 13268000 6701500 2378700 4322800 4148 1861 4316 21416;21417;21418;21419;21420;21421;21422;21423;21424;21425;21426;21427;21428;21429;21430;21431 22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074;22075;22076;22077;22078;22079 22070 26 DFLAGGVAAAVSK ______________________________ LKDFLAGGVAAAVSKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 2 0 0 13 0 1204.6452 P12235;V9GYG0 P12235 11 23 SLC25A4 ADP/ATP translocase 1 yes no 2 0.0010236 70.488 By MS/MS By MS/MS By matching By matching 3 3 3 1 1.0827 0.99473 31.388 10 Median 0.93883 0.94161 23.736 3 0 Median 1.5031 1.3174 14.933 3 0 Plateau 0.99813 0.57731 38.166 3 0 Plateau 1.1946 0.99973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61052000 27280000 33771000 31199000 14207000 16992000 10870000 4801600 6068800 18133000 7878700 10254000 848920 392890 456030 0 0 0 0 0 0 4149 1976 4317 21432;21433;21434;21435;21436;21437;21438;21439;21440;21441 22080;22081;22082;22083 22083 3 DFLIPIGK MYGVPFEFPPEAQSKDFLIPIGKAKIERQG PPEAQSKDFLIPIGKAKIERQGTHITVVSH K D F G K A 0 0 0 1 0 0 0 1 0 2 1 1 0 1 1 0 0 0 0 0 0 0 8 0 901.5273 P11177;C9J634;F8WF02 P11177 220 227 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.026977 41.502 By MS/MS By matching By matching By matching By matching 1 1 3 2 1 1.003 0.98766 10.359 8 Median 0.85321 0.79315 NaN 1 0 Median 1.1762 0.9871 NaN 1 0 Median 0.9818 1.0433 11.852 3 0 Median NaN NaN NaN 0 0 Median 0.94967 0.94477 6.3593 2 0 Median 1.1533 0.9892 NaN 1 0 Median 20827000 10567000 10261000 9213500 4875200 4338300 5497900 2519500 2978400 4070200 2069200 2000900 0 0 0 1850700 1006800 843890 195240 95784 99457 4150 1954 4318 21442;21443;21444;21445;21446;21447;21448;21449 22084;22085 22085 2 DFLITQMTGK LLQSSGPERTALFIRDFLITQMTGKELFEM ALFIRDFLITQMTGKELFEMWKIINPMGLL R D F G K E 0 0 0 1 0 1 0 1 0 1 1 1 1 1 0 0 2 0 0 0 0 0 10 0 1152.5849 Q9H9J2 Q9H9J2 217 226 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 2 0.00039696 78.149 By MS/MS By MS/MS By matching 1 1 1 1.3087 1.2198 15.667 3 Median 1.3087 1.2198 NaN 1 0 Median 1.5012 1.265 NaN 1 0 Median 0.99088 0.94873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13621000 6070000 7551000 8491200 3771600 4719600 2627600 1033500 1594100 2502200 1264900 1237300 0 0 0 0 0 0 0 0 0 4151 4000 4319 21450;21451;21452 22086;22087;22088 22086 3 DFLLDIAR IQCRADQSFTSPPPRDFLLDIARQKNQTPL FTSPPPRDFLLDIARQKNQTPLPLIKPYAG R D F A R Q 1 1 0 2 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 961.52328 Q9HBM6;D6RHW1;D6RIY1;D6RGK3;D6RIV9 Q9HBM6 90 97 TAF9B;TAF9 Transcription initiation factor TFIID subunit 9B no no 2 0.023052 44.447 By matching By MS/MS By matching By matching 1 2 1 1 1.1172 1.0716 44.645 5 Median NaN NaN NaN 0 0 Median 1.1064 0.94554 NaN 1 0 Median 1.7989 1.7023 65.446 2 0 Median 1.339 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0501 0.92568 NaN 1 0 Median 2721600 1169500 1552100 0 0 0 663490 301940 361550 1790800 739720 1051100 74975 28819 46156 0 0 0 192260 99020 93243 4152 4022 4320 21453;21454;21455;21456;21457 22089;22090;22091 22090 3 DFLLKPELLR DVKGSYVSIHSSGFRDFLLKPELLRAIVDC SSGFRDFLLKPELLRAIVDCGFEHPSEVQH R D F L R A 0 1 0 1 0 0 1 0 0 0 4 1 0 1 1 0 0 0 0 0 0 0 10 1 1242.7336 O00148;K7EQN7;K7EPJ3;K7EN69;K7ENP6;K7EL56;K7EIL8;F6SXL5;Q13838;Q5STU3;F6WLT2;A0A0A0MT12;F6TRA5;F6S4E6;F6R6M7;F6QYI9;A0A0G2JJL7;A0A0G2JHN7;F6S2B7;F6U6E2 Q13838 49 58 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 0.0019792 105.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 13 4 13 4 0.99219 0.99206 20.388 43 Median 1.0338 1.0313 18.821 3 0 Plateau 0.91036 0.85616 28.239 6 0 Median 0.89645 0.97717 17.009 13 0 Median 1.1382 1.0358 6.8097 4 0 Median 0.99219 1.0114 17.951 13 0 Median 1.1288 1.0144 18.857 4 0 Median 818070000 408760000 409310000 11663000 5650200 6013200 29001000 14309000 14691000 619930000 313780000 306150000 107940000 50806000 57132000 41261000 20318000 20943000 8274800 3896100 4378700 4153 2842;1441 4321 21458;21459;21460;21461;21462;21463;21464;21465;21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483;21484;21485;21486;21487;21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500 22092;22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113;22114;22115;22116;22117;22118 22118 27 DFLLQQTMLR EAALSCCSDADPSTKDFLLQQTMLRVKDPK DPSTKDFLLQQTMLRVKDPKKSLDFYTRVL K D F L R V 0 1 0 1 0 2 0 0 0 0 3 0 1 1 0 0 1 0 0 0 0 0 10 0 1263.6645 Q04760 Q04760 29 38 GLO1 Lactoylglutathione lyase yes yes 2 5.6804E-05 126.41 By MS/MS By MS/MS By MS/MS By matching By matching 4 5 1 2 1 1.1694 1.1047 9.1942 13 Median 1.1235 1.0694 9.9178 4 0 Median 1.3902 1.1701 12.227 5 1 Plateau 1.056 1.0144 NaN 1 1 Median 1.3469 1.1076 0.36482 2 0 Median 1.0764 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median 270220000 126970000 143250000 239110000 112510000 126600000 13657000 6059100 7598100 15527000 7547900 7979300 1000200 384790 615430 922180 466020 456160 0 0 0 4154 2712 4322;4323 21501;21502;21503;21504;21505;21506;21507;21508;21509;21510;21511;21512;21513 22119;22120;22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133 22127 1400 15 DFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K D F A R R 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 834.45995 P63173;J3KT73;J3QL01;J3KSP2 P63173 10 16 RPL38 60S ribosomal protein L38 yes no 2 0.050156 50.966 By MS/MS By MS/MS By matching 1 1 1 0.90082 0.91458 25.771 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90082 0.91458 NaN 1 1 Median 1.3316 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82009 0.63892 NaN 1 0 Median 3033500 1475500 1558000 0 0 0 0 0 0 1471600 774860 696710 629750 170100 459650 0 0 0 932200 530550 401650 4155 2622 4324 21514;21515;21516 22134;22135 22135 2 DFLTHVSAR EYQESNALLLRSPNRDFLTHVSARERCPAC LRSPNRDFLTHVSARERCPACFVGTITGDR R D F A R E 1 1 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1044.5352 O15067 O15067 573 581 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.0028118 69.423 By MS/MS 1 0.84334 0.70025 NaN 1 Median NaN NaN NaN 0 0 Median 0.84334 0.70025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21647000 11870000 9777900 0 0 0 21647000 11870000 9777900 0 0 0 0 0 0 0 0 0 0 0 0 4156 1518 4325 21517 22136 22136 1 DFLVQIK FSLNQDIPAFKEHLRDFLVQIKEFAGEDTS PAFKEHLRDFLVQIKEFAGEDTSDLFLEER R D F I K E 0 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 861.496 O14980 O14980 1017 1023 XPO1 Exportin-1 yes yes 2 0.025249 54.525 By MS/MS By matching By matching 1 1 1 1.2638 1.1013 24.298 3 Median 1.033 1.0242 NaN 1 0 Median 1.2638 1.1013 NaN 1 0 Median 1.5368 1.6102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7017600 3128100 3889500 2605300 1326300 1279000 2867200 1074800 1792400 1545100 727030 818060 0 0 0 0 0 0 0 0 0 4157 1510 4326 21518;21519;21520 22137;22138 22137 2 DFMFQPLDGLK INTAKIKGKNSFAPKDFMFQPLDGLKTYQV FAPKDFMFQPLDGLKTYQVTPMTPRSANAF K D F L K T 0 0 0 2 0 1 0 1 0 0 2 1 1 2 1 0 0 0 0 0 0 0 11 0 1309.6377 Q15398 Q15398 311 321 DLGAP5 Disks large-associated protein 5 yes yes 2 0.008703 41.029 By MS/MS By matching 4 5 1.0391 1.0789 30.17 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1733 1.1974 8.9738 4 0 Median 0.87068 0.75453 28.239 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4944400 2219600 2724800 0 0 0 0 0 0 4214600 1851300 2363300 729840 368330 361510 0 0 0 0 0 0 4158 2948 4327;4328 21521;21522;21523;21524;21525;21526;21527;21528;21529 22139;22140;22141 22140 1628 3 DFMIQGGDFTR KGFGYKNSKFHRVIKDFMIQGGDFTRGDGT RVIKDFMIQGGDFTRGDGTGGKSIYGERFP K D F T R G 0 1 0 2 0 1 0 2 0 1 0 0 1 2 0 0 1 0 0 0 0 0 11 0 1285.5761 P23284 P23284 99 109 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.00011196 123.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 3 2 1.2202 1.1561 14.152 13 Median 1.1365 1.0748 0.15322 2 0 Median 1.3914 1.1561 14.647 3 0 Median 1.1067 1.0624 29.057 3 0 Median 1.4122 1.1696 NaN 1 0 Median 1.114 1.1323 7.2302 2 0 Median 1.4553 1.1786 1.6896 2 0 Median 138110000 64300000 73808000 13025000 6095300 6929700 3085300 1242500 1842800 112350000 52938000 59413000 2383000 967510 1415500 3074100 1280500 1793600 4189000 1776500 2412500 4159 2109 4329;4330 21530;21531;21532;21533;21534;21535;21536;21537;21538;21539;21540;21541;21542;21543 22142;22143;22144;22145;22146;22147;22148;22149;22150;22151;22152;22153;22154 22150 877 13 DFMLITNK SFLLNFTGCAVCSKRDFMLITNKSLKEEDG CAVCSKRDFMLITNKSLKEEDGEEIVTYDH R D F N K S 0 0 1 1 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 8 0 980.5001 B4DL54;H0YJ25;H0YHB4;H0YIM9;H0YID9;H0YIM3;A0A0C4DGJ7;H0YHA3;Q8WUH1 B4DL54 37 44 CHURC1-FNTB;CHURC1 Protein Churchill yes no 2 0.010149 77.282 By MS/MS 1 1.2478 1.1433 NaN 1 Median 1.2478 1.1433 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4393000 1940900 2452200 4393000 1940900 2452200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4160 597 4331 21544 22155 22155 1 DFMYVSQDPK EKALAMGYKPKAYLRDFMYVSQDPKDQLLL KAYLRDFMYVSQDPKDQLLLGPTYATPKVL R D F P K D 0 0 0 2 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 0 0 10 0 1228.5434 P55084;F5GZQ3;B5MD38 P55084 339 348 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0014621 65.305 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.3924 1.1834 32.242 5 Median 1.1692 1.1172 NaN 1 0 Median 1.3924 1.1834 NaN 1 0 Median 1.2594 1.3458 62.386 2 0 Median 1.4151 1.2632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22477000 10663000 11814000 3216800 1676500 1540200 6368300 2968800 3399500 10260000 4877800 5382400 2631700 1140200 1491500 0 0 0 0 0 0 4161 2496 4332 21545;21546;21547;21548;21549 22156;22157;22158;22159;22160 22157 5 DFMYVSQDPKDQLLLGPTYATPK EKALAMGYKPKAYLRDFMYVSQDPKDQLLL PKDQLLLGPTYATPKVLEKAGLTMNDIDAF R D F P K V 1 0 0 3 0 2 0 1 0 0 3 2 1 1 3 1 2 0 2 1 0 0 23 1 2626.2989 P55084;F5GZQ3;B5MD38 P55084 339 361 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 0.011549 19.378 By MS/MS By MS/MS By matching 1 1 1 0.74938 0.78802 15.13 3 Median 0.66497 0.64099 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74938 0.78802 NaN 1 0 Median 0.90625 0.86077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6815300 3750500 3064900 2641100 1504500 1136600 0 0 0 3608500 1919200 1689300 565820 326800 239020 0 0 0 0 0 0 4162 2496 4333 21550;21551;21552 22161;22162;22163 22163 3 DFNHINVELSLLGK GRTVIVKGPRGTLRRDFNHINVELSLLGKK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R D F G K K 0 0 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 14 0 1597.8464 D6RAN4;P32969;A0A2R8Y5Y7;E7ESE0 D6RAN4 37 50 RPL9 60S ribosomal protein L9 yes no 2;3 8.801E-09 110.31 By matching By MS/MS By matching By matching 2 2 1 2 1.1944 1.0032 16.657 7 Median 1.2593 1.1986 5.495 2 0 Median 1.2212 1.0291 5.0775 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71579 0.73493 NaN 1 0 Median 1.1974 0.99458 1.2213 2 0 Median 23681000 10763000 12918000 4950000 2174200 2775800 12205000 5763000 6442000 0 0 0 0 0 0 901010 457680 443330 5624800 2368100 3256700 4163 812 4334 21553;21554;21555;21556;21557;21558;21559 22164;22165;22166 22164 3 DFNHINVELSLLGKK GRTVIVKGPRGTLRRDFNHINVELSLLGKK DFNHINVELSLLGKKKKRLRVDKWWGNRKE R D F K K K 0 0 2 1 0 0 1 1 1 1 3 2 0 1 0 1 0 0 0 1 0 0 15 1 1725.9414 D6RAN4;P32969;A0A2R8Y5Y7;E7ESE0 D6RAN4 37 51 RPL9 60S ribosomal protein L9 yes no 3 0.00018072 46.408 By MS/MS By matching By matching 1 1 1 1.0984 1.0519 6.9629 3 Median 1.1311 1.1517 NaN 1 0 Median 1.0984 1.0044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0066 1.0519 NaN 1 0 Median NaN NaN NaN 0 0 Median 7546600 3575100 3971500 2988800 1395200 1593600 3854000 1844300 2009700 0 0 0 0 0 0 703720 335560 368150 0 0 0 4164 812 4335 21560;21561;21562 22167;22168 22167 2 DFNMPLTISSLK LVGPAPWGFRLQGGKDFNMPLTISSLKDGG GGKDFNMPLTISSLKDGGKAAQANVRIGDV K D F L K D 0 0 1 1 0 0 0 0 0 1 2 1 1 1 1 2 1 0 0 0 0 0 12 0 1364.701 Q96HC4 Q96HC4 23 34 PDLIM5 PDZ and LIM domain protein 5 yes yes 2 0.056027 42.743 By MS/MS 1 1.037 1.1024 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.037 1.1024 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1881600 868000 1013600 0 0 0 0 0 0 1881600 868000 1013600 0 0 0 0 0 0 0 0 0 4165 3665 4336 21563 22169 22169 1 DFNPTATVK IMTRFRKEMKNGLSRDFNPTATVKMLPTFV KNGLSRDFNPTATVKMLPTFVRSIPDGSEK R D F V K M 1 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 1 0 0 9 0 991.49746 P19367;B1AR62 P19367 54 62 HK1 Hexokinase-1 yes no 2 0.0098224 48.794 By MS/MS By MS/MS 1 2 1.119 0.96372 11.784 3 Median 0.89554 0.87382 NaN 1 0 Median 1.1853 1.0319 9.6645 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11740000 5554500 6185700 4891400 2544400 2347100 6848700 3010100 3838600 0 0 0 0 0 0 0 0 0 0 0 0 4166 2064 4337 21564;21565;21566 22170;22171 22170 2 DFNQFIK KEKLLTQGFTNWNKRDFNQFIKANEKWGRD GFTNWNKRDFNQFIKANEKWGRDDIENIAR R D F I K A 0 0 1 1 0 1 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 7 0 910.45487 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 849 855 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.011345 80.377 By matching By matching By MS/MS By matching By MS/MS 1 2 2 1 4 1.1169 1.0568 18.259 10 Median 1.1216 1.0494 NaN 1 0 Median 1.2094 1.0302 12.133 2 0 Median 0.95258 0.97657 5.3042 2 0 Median 1.2719 1.0643 NaN 1 0 Median 1.0838 1.1225 25.363 4 0 Median NaN NaN NaN 0 0 Median 48867000 23094000 25773000 11468000 5079300 6388700 4964400 2396100 2568400 12573000 6434300 6138400 1201500 540840 660630 18660000 8643300 10017000 0 0 0 4167 1608;643;167 4338 21567;21568;21569;21570;21571;21572;21573;21574;21575;21576 22172;22173;22174;22175;22176 22173 5 DFNVPLSISR LEGPAPWGFRLQGGKDFNVPLSISRLTPGG LQGGKDFNVPLSISRLTPGGKAAQAGVAVG K D F S R L 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 2 0 0 0 1 0 0 10 0 1146.6033 D6RF83;H7BYK4;D6RH06;Q9NR12;D6RAN1 D6RF83 23 32 PDLIM7 PDZ and LIM domain protein 7 yes no 2 0.011083 43.083 By matching By MS/MS By matching 1 2 1 1.1569 1.0933 24.532 4 Median NaN NaN NaN 0 0 Median 1.1354 0.97087 NaN 1 0 Median 0.99109 1.0147 27.351 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.77 1.4521 NaN 1 0 Median 10393000 4669300 5723600 0 0 0 2585300 1062300 1523000 7680200 3555100 4125100 0 0 0 0 0 0 127400 51896 75502 4168 825 4339 21577;21578;21579;21580 22177 22177 1 DFPLNDLLSATELDKIR KQALETVNDYNPLMKDFPLNDLLSATELDK PLNDLLSATELDKIRQALVAIFTHLRKIRN K D F I R Q 1 1 1 3 0 0 1 0 0 1 4 1 0 1 1 1 1 0 0 0 0 0 17 1 1959.0313 Q14204 Q14204 338 354 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 3.1751E-05 49.559 By MS/MS 2 1.0437 1.0133 4.4633 2 Median NaN NaN NaN 0 0 Median 1.0437 1.0133 4.4633 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2500900 1132000 1368900 0 0 0 2500900 1132000 1368900 0 0 0 0 0 0 0 0 0 0 0 0 4169 2865 4340 21581;21582 22178;22179 22178 2 DFPLSGYVELR RILTDYGFEGHPFRKDFPLSGYVELRYDDE PFRKDFPLSGYVELRYDDEVKRVVAEPVEL K D F L R Y 0 1 0 1 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 1 0 0 11 0 1294.6558 O75489 O75489 201 211 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.0054074 46.158 By MS/MS 1 0.79822 0.75286 NaN 1 Median 0.79822 0.75286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2784900 1268900 1516000 2784900 1268900 1516000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4170 1678 4341 21583 22180;22181 22181 2 DFPQYFAVVSR PEELGKKRICRIITKDFPQYFAVVSRIKQE IITKDFPQYFAVVSRIKQESNQIGPEGGIL K D F S R I 1 1 0 1 0 1 0 0 0 0 0 0 0 2 1 1 0 0 1 2 0 0 11 0 1327.6561 Q12955;A0A087WZ65;A0A087WTF3;I6L894;Q01484;E9PHW9;A0A0U1RQN6;D6RHE1;E9PCH6;H0Y931 Q12955 1129 1139 ANK3;ANK2 Ankyrin-3;Ankyrin-2 no no 2 0.00029355 93.111 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.90956 0.91582 9.7048 7 Median 0.91278 0.91802 0.34004 2 1 Median NaN NaN NaN 0 0 Median 0.80012 0.88499 3.0164 3 2 Median 1.3086 1.1493 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1289 0.9564 NaN 1 0 Median 13712000 7179100 6532500 3070300 1488300 1582000 0 0 0 9949300 5382000 4567300 607210 266300 340910 0 0 0 84780 42561 42220 4171 2773;1297 4342 21584;21585;21586;21587;21588;21589;21590 22182;22183;22184;22185;22186;22187;22188;22189 22183 8 DFPYEEDSRPR APPTSLVEKDKELPRDFPYEEDSRPRSQSS ELPRDFPYEEDSRPRSQSSKAAIPPPVYEE R D F P R S 0 2 0 2 0 0 2 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 11 1 1409.6212 Q96I25;Q5W010;Q5W011;H0Y6J6;Q5W012 Q96I25 191 201 RBM17 Splicing factor 45 yes no 3 0.00022231 64.439 By MS/MS By matching 1 1 0.54632 0.58893 14.962 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60464 0.65465 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49363 0.52981 NaN 1 0 Median NaN NaN NaN 0 0 Median 10089000 6206100 3883400 0 0 0 0 0 0 6165600 3785100 2380500 0 0 0 3923900 2421000 1502900 0 0 0 4172 3674 4343 21591;21592 22190 22190 1 DFQAISDVIGNK EEQLLAVQAIRKYGRDFQAISDVIGNKSVV YGRDFQAISDVIGNKSVVQVKNFFVNYRRR R D F N K S 1 0 1 2 0 1 0 1 0 2 0 1 0 1 0 1 0 0 0 1 0 0 12 0 1305.6565 Q9UKL0 Q9UKL0 404 415 RCOR1 REST corepressor 1 yes yes 2 4.3735E-05 95.573 By MS/MS By MS/MS 1 1 1.106 1.0092 9.828 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97217 0.94145 NaN 1 0 Median 1.2582 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22502000 10923000 11578000 0 0 0 0 0 0 21667000 10565000 11102000 834710 358290 476420 0 0 0 0 0 0 4173 4312 4344 21593;21594 22191;22192;22193 22192 3 DFQSGQHVIVR TDELSLTNCAVVNEKDFQSGQHVIVRTSPN VNEKDFQSGQHVIVRTSPNHRYTFTLKTHP K D F V R T 0 1 0 1 0 2 0 1 1 1 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1284.6575 I3L0N3;P46459;I3L0L3;I3L338;I3L4Q9 I3L0N3 23 33 NSF Vesicle-fusing ATPase yes no 2;3 0.00013635 90.629 By MS/MS By MS/MS By MS/MS 2 2 1 1.1923 1.1638 14.528 5 Median 1.134 1.1028 7.6059 2 0 Median 1.534 1.3278 15.192 2 0 Median 0.97559 1.0287 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18061000 7804100 10257000 6472500 3163300 3309200 10074000 3794500 6279800 1514700 846340 668410 0 0 0 0 0 0 0 0 0 4174 1272 4345 21595;21596;21597;21598;21599 22194;22195;22196;22197;22198;22199;22200;22201;22202 22200 9 DFQTETIR PKRRRPARSIFDGFRDFQTETIRQEQELRN SIFDGFRDFQTETIRQEQELRNGGAIDKKL R D F I R Q 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 8 0 1008.4876 O94888 O94888 113 120 UBXN7 UBX domain-containing protein 7 yes yes 2 0.017258 68.915 By MS/MS 1 0.92597 0.8031 NaN 1 Median NaN NaN NaN 0 0 Median 0.92597 0.8031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2806400 1754700 1051700 0 0 0 2806400 1754700 1051700 0 0 0 0 0 0 0 0 0 0 0 0 4175 1733 4346 21600 22203 22203 1 DFSALESQLQDTQELLQEENR GLLSQSDSKSSKLTKDFSALESQLQDTQEL SQLQDTQELLQEENRQKLSLSTKLKQVEDE K D F N R Q 1 1 1 2 0 4 4 0 0 0 4 0 0 1 0 2 1 0 0 0 0 0 21 0 2492.1667 P35579 P35579 1302 1322 MYH9 Myosin-9 yes yes 2;3 1.0426E-107 253.69 By MS/MS By MS/MS By matching By MS/MS 2 3 2 3 1.0366 1.0659 18.869 10 Median 1.1692 1.1462 4.6167 2 0 Median 1.0347 0.88206 10.412 3 0 Median 1.0069 1.1224 7.8997 2 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0703 19.521 3 0 Median NaN NaN NaN 0 0 Median 22827000 10390000 12437000 6569300 2887500 3681800 14612000 6783900 7827700 418940 182230 236710 0 0 0 1227400 536270 691130 0 0 0 4176 2244 4347 21601;21602;21603;21604;21605;21606;21607;21608;21609;21610 22204;22205;22206;22207;22208;22209;22210;22211 22210 8 DFSALESQLQDTQELLQEENRQK GLLSQSDSKSSKLTKDFSALESQLQDTQEL LQDTQELLQEENRQKLSLSTKLKQVEDEKN K D F Q K L 1 1 1 2 0 5 4 0 0 0 4 1 0 1 0 2 1 0 0 0 0 0 23 1 2748.3202 P35579 P35579 1302 1324 MYH9 Myosin-9 yes yes 3 0.034234 12.677 By MS/MS 1 1.235 1.2424 NaN 1 Median 1.235 1.2424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8964000 3844400 5119600 8964000 3844400 5119600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4177 2244 4348 21611 22212 22212 1 DFSAPTLEDHFNK RGAFFMDEDEEVYKRDFSAPTLEDHFNKTI KRDFSAPTLEDHFNKTILPKVMQVKNFGRS R D F N K T 1 0 1 2 0 0 1 0 1 0 1 1 0 2 1 1 1 0 0 0 0 0 13 0 1519.6943 P55081 P55081 359 371 MFAP1 Microfibrillar-associated protein 1 yes yes 2;3 0.00056562 49.12 By matching By MS/MS By matching By MS/MS By matching 1 1 1 5 1 0.88236 0.96078 47.729 9 Median NaN NaN NaN 0 0 Median 0.88236 0.78229 NaN 1 0 Median 0.81833 0.81883 NaN 1 0 Median 1.2666 1.0857 NaN 1 0 Median 0.80882 0.96078 65.186 5 1 Median 1.2829 1.0803 NaN 1 0 Median 47352000 28587000 18766000 0 0 0 232170 82596 149570 5442200 2987500 2454600 322580 165440 157140 39973000 24545000 15427000 1382600 805740 576900 4178 2495 4349 21612;21613;21614;21615;21616;21617;21618;21619;21620 22213;22214;22215;22216 22213 4 DFSASYFSGEQEVTPSR PSHLSSNSQRTPIRRDFSASYFSGEQEVTP SASYFSGEQEVTPSRSTLQIGKRDANSSFF R D F S R S 1 1 0 1 0 1 2 1 0 0 0 0 0 2 1 4 1 0 1 1 0 0 17 0 1905.8381 P49454 P49454 240 256 CENPF Centromere protein F yes yes 2 9.3121E-14 137.59 By MS/MS 1 0.9787 1.0417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9787 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6791100 3402400 3388700 0 0 0 0 0 0 6791100 3402400 3388700 0 0 0 0 0 0 0 0 0 4179 2383 4350 21621 22217;22218 22218 2 DFSDITK LVLAPTRELANQVSKDFSDITKKLSVACFY ELANQVSKDFSDITKKLSVACFYGGTPYGG K D F T K K 0 0 0 2 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 7 0 824.3916 Q9NR30 Q9NR30 279 285 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.053242 38.792 By MS/MS 1 1.3512 1.4267 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3512 1.4267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1775200 725750 1049500 0 0 0 0 0 0 1775200 725750 1049500 0 0 0 0 0 0 0 0 0 4180 4076 4351 21622 22219 22219 1 DFSLEQLR GEESPATSLPRMKKRDFSLEQLRQYDGSRN LPRMKKRDFSLEQLRQYDGSRNPRILLAVN R D F L R Q 0 1 0 1 0 1 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1006.5084 O15173 O15173 102 109 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 2 0.023052 44.447 By matching By matching By MS/MS By matching 1 1 1 1 0.90411 0.89761 20.495 4 Median 0.79891 0.75736 NaN 1 0 Median 1.4522 1.2369 NaN 1 0 Median 0.94122 0.89553 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86845 0.8997 NaN 1 0 Median NaN NaN NaN 0 0 Median 15691000 7900600 7790000 10497000 5427900 5068800 1028900 375700 653190 3195100 1589800 1605300 0 0 0 969940 507150 462790 0 0 0 4181 1529 4352 21623;21624;21625;21626 22220;22221 22220 2 DFSNSPLHR VQLPREGQEDQGLTKDFSNSPLHRFKKPGS DQGLTKDFSNSPLHRFKKPGSKNFQNIFPP K D F H R F 0 1 1 1 0 0 0 0 1 0 1 0 0 1 1 2 0 0 0 0 0 0 9 0 1071.5098 O95758 O95758 450 458 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 2 0.00074849 100.45 By MS/MS By MS/MS By matching 1 1 1 0.77027 0.66294 18.739 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9073 0.91483 NaN 1 0 Median 0.762 0.66294 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77027 0.65964 NaN 1 0 Median 6066400 3273200 2793200 0 0 0 0 0 0 2472500 1259400 1213100 2523300 1508300 1015000 0 0 0 1070600 505460 565120 4182 1791 4353 21627;21628;21629 22222;22223;22224 22223 3 DFSPSGIFGAFQR LEVKLGELPSWILMRDFSPSGIFGAFQRGY MRDFSPSGIFGAFQRGYYRYYNKYINVKKG R D F Q R G 1 1 0 1 0 1 0 2 0 1 0 0 0 3 1 2 0 0 0 0 0 0 13 0 1427.6834 C9JJT5;G3V325;P56134;C9JU26 P56134 34 46 ATP5J2-PTCD1;ATP5J2 ATP synthase subunit f, mitochondrial no no 2 8.722E-07 112.75 By MS/MS By MS/MS By MS/MS 5 2 1 1.0829 1.0316 8.3069 8 Median 1.0123 1.0217 9.2907 5 1 Median 1.2381 1.0498 1.1975 2 0 Median 1.1306 1.1444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20613000 9776800 10836000 11842000 5771500 6071000 5858900 2629400 3229500 2911200 1375900 1535300 0 0 0 0 0 0 0 0 0 4183 2506;703 4354 21630;21631;21632;21633;21634;21635;21636;21637 22225;22226;22227;22228;22229;22230;22231;22232;22233;22234;22235;22236 22226 12 DFSSHDEINNYLQQIDQLK ESVPSAKSANPAVSKDFSSHDEINNYLQQI HDEINNYLQQIDQLKERIAGLEEEKQKNKE K D F L K E 0 0 2 3 0 3 1 0 1 2 2 1 0 1 0 2 0 0 1 0 0 0 19 0 2306.0815 Q14789 Q14789 1828 1846 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.057023 8.6005 By MS/MS 2 1.2549 1.0985 10.589 2 Median NaN NaN NaN 0 0 Median 1.2549 1.0985 10.589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2829200 1184200 1645000 0 0 0 2829200 1184200 1645000 0 0 0 0 0 0 0 0 0 0 0 0 4184 2900 4355 21638;21639 22237 22237 1 DFSSHDEINNYLQQIDQLKER ESVPSAKSANPAVSKDFSSHDEINNYLQQI EINNYLQQIDQLKERIAGLEEEKQKNKEFS K D F E R I 0 1 2 3 0 3 2 0 1 2 2 1 0 1 0 2 0 0 1 0 0 0 21 1 2591.2252 Q14789 Q14789 1828 1848 GOLGB1 Golgin subfamily B member 1 yes yes 4 0.061853 7.9922 By matching By MS/MS 1 1 1.5898 1.5906 3.6175 2 Median 1.519 1.5505 NaN 1 0 Median 1.6638 1.6318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2622200 1020200 1602100 1979200 803190 1176000 643040 216970 426070 0 0 0 0 0 0 0 0 0 0 0 0 4185 2900 4356 21640;21641 22238 22238 1 DFSVFFQK EMALKNKAAKGSATKDFSVFFQKIRETGER AKGSATKDFSVFFQKIRETGERPSNEEIMR K D F Q K I 0 0 0 1 0 1 0 0 0 0 0 1 0 3 0 1 0 0 0 1 0 0 8 0 1016.4967 O95202 O95202 285 292 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.033626 38.238 By MS/MS By matching By matching By matching 1 2 1 1 1.3838 1.352 15.029 5 Median 1.1362 1.0547 NaN 1 0 Median 1.4393 1.288 6.8574 2 0 Median 1.3291 1.4133 NaN 1 0 Median 1.7633 1.5681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9170000 4210400 4959600 6192900 2941100 3251800 968720 402350 566370 1821800 804420 1017400 186500 62467 124040 0 0 0 0 0 0 4186 1754 4357 21642;21643;21644;21645;21646 22239 22239 1 DFSYNYFGFK LANKDRLNSAIIYDRDFSYNYFGFKTLERS IIYDRDFSYNYFGFKTLERSYLLKINGKVA R D F F K T 0 0 1 1 0 0 0 1 0 0 0 1 0 3 0 1 0 0 2 0 0 0 10 0 1286.5608 P23921 P23921 140 149 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.022594 36.395 By MS/MS By matching By matching By matching 1 1 1 1 1.3114 1.1716 16.892 4 Median 1.1366 1.0606 NaN 1 0 Median 1.2003 1.0499 NaN 1 0 Median 1.4329 1.4908 NaN 1 0 Median 1.4786 1.2944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10811000 4938500 5872800 5702400 2761000 2941400 4339200 1834900 2504300 698510 317360 381150 71166 25255 45911 0 0 0 0 0 0 4187 2121 4358 21647;21648;21649;21650 22240 22240 1 DFTATDLSEFAAK AAKRTPFGAYGGLLKDFTATDLSEFAAKAA LKDFTATDLSEFAAKAALSAGKVSPETVDS K D F A K A 3 0 0 2 0 0 1 0 0 0 1 1 0 2 0 1 2 0 0 0 0 0 13 0 1414.6616 A0A0B4J2A4;P42765 A0A0B4J2A4 23 35 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 2.309E-06 98.943 By MS/MS By MS/MS 1 2 1.2506 1.2957 25.347 3 Median 0.9215 0.85577 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2802 1.3252 3.1798 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29563000 13326000 16237000 10734000 5700000 5034300 0 0 0 18829000 7626200 11203000 0 0 0 0 0 0 0 0 0 4188 220 4359 21651;21652;21653 22241;22242;22243;22244 22242 4 DFTATFGPLDSLNTR VLSAAMYPDVFAHFKDFTATFGPLDSLNTR DFTATFGPLDSLNTRLFLQGPKIAEEFEVE K D F T R L 1 1 1 2 0 0 0 1 0 0 2 0 0 2 1 1 3 0 0 0 0 0 15 0 1653.7999 P11498 P11498 1022 1036 PC Pyruvate carboxylase, mitochondrial yes yes 2 3.3586E-06 71.555 By MS/MS By MS/MS 1 1 1.1416 0.99404 NaN 1 Median NaN NaN NaN 0 0 Median 1.1416 0.99404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1215800 582920 632900 0 0 0 1215800 582920 632900 0 0 0 0 0 0 0 0 0 0 0 0 4189 1967 4360 21654;21655 22245;22246 22245 2 DFTDEKEGPITK ALMALRRGSRNLVFRDFTDEKEGPITKHIR VFRDFTDEKEGPITKHIRLTAALILKNIGK R D F T K H 0 0 0 2 0 0 2 1 0 1 0 2 0 1 1 0 2 0 0 0 0 0 12 1 1378.6616 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1755 1766 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.0020875 38.799 By MS/MS 1 0.53561 0.61821 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53561 0.61821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4908800 3071700 1837000 0 0 0 0 0 0 4908800 3071700 1837000 0 0 0 0 0 0 0 0 0 4190 3122 4361 21656 22247 22247 1 DFTPAELR SDDDEPPPLPRLKRRDFTPAELRRFDGVQD LPRLKRRDFTPAELRRFDGVQDPRILMAIN R D F L R R 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 8 0 947.47125 O00264 O00264 72 79 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.003018 134.06 By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1.0525 1.024 24.582 9 Median 0.95874 0.91109 34.785 3 0 Median 1.3139 1.1075 1.408 2 0 Median 1.0197 0.98751 10.093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2786 1.0616 24.084 2 0 Median 55522000 28154000 27368000 33230000 17948000 15282000 7348500 2991900 4356600 12976000 6393200 6582800 0 0 0 0 0 0 1967300 820700 1146600 4191 1451 4362 21657;21658;21659;21660;21661;21662;21663;21664;21665 22248;22249;22250;22251;22252 22249 5 DFTPAELRR SDDDEPPPLPRLKRRDFTPAELRRFDGVQD PRLKRRDFTPAELRRFDGVQDPRILMAING R D F R R F 1 2 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 9 1 1103.5724 O00264 O00264 72 80 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.00048133 106.04 By MS/MS By MS/MS 1 1 1.0817 1.0307 5.3557 2 Median 0.92837 0.99236 NaN 1 1 Median 1.2604 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20604000 10898000 9705500 15066000 8312900 6752800 5538300 2585600 2952700 0 0 0 0 0 0 0 0 0 0 0 0 4192 1451 4363 21666;21667 22253;22254 22253 2 DFTPVCTTELGR DFLGDSWGILFSHPRDFTPVCTTELGRAAK HPRDFTPVCTTELGRAAKLAPEFAKRNVKL R D F G R A 0 1 0 1 1 0 1 1 0 0 1 0 0 1 1 0 3 0 0 1 0 0 12 0 1394.65 P30041 P30041 42 53 PRDX6 Peroxiredoxin-6 yes yes 2 6.4245E-05 123.86 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.97123 0.9228 25.261 7 Median 0.95785 0.90999 1.9761 2 2 Median 1.1039 0.91313 4.5858 2 0 Median 0.94719 0.98208 NaN 1 0 Median 0.60701 0.49377 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2007 1.0539 NaN 1 0 Median 69816000 32036000 37779000 47714000 21752000 25962000 20021000 9262800 10758000 1661100 838350 822770 187950 116880 71075 0 0 0 232180 66118 166060 4193 2179 4364 21668;21669;21670;21671;21672;21673;21674 22255;22256;22257;22258;22259 22258 5 DFTSEPR VVCEYIVKKIPVPPRDFTSEPRLIVIRSFD KKIPVPPRDFTSEPRLIVIRSFDVNKPGCE R D F P R L 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 7 0 850.3821 P41091;Q2VIR3 P41091 249 255 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.050156 40.103 By MS/MS By matching 1 1 1.0093 0.87744 2.5857 2 Median NaN NaN NaN 0 0 Median 1.029 0.89363 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98989 0.86154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2048300 1000600 1047700 0 0 0 1543000 729350 813640 0 0 0 505310 271290 234020 0 0 0 0 0 0 4194 2295 4365 21675;21676 22260 22260 1 DFTSLENTVEER DLSDGIHVVKDARERDFTSLENTVEERLTE RERDFTSLENTVEERLTELTKSINDNIAIF R D F E R L 0 1 1 1 0 0 3 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1438.6576 Q07065 Q07065 229 240 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0003417 132.78 By MS/MS By matching By matching 1 1 1 1.534 1.3275 20.972 3 Median 0.9916 0.94457 NaN 1 0 Median 1.534 1.3275 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6163 1.3847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17353000 7802000 9550700 10513000 5357200 5155600 6575200 2346200 4229000 0 0 0 264680 98656 166020 0 0 0 0 0 0 4195 2730 4366 21677;21678;21679 22261 22261 1 DFTVASPAEFVTR LVKQGRDRKKIDSQRDFTVASPAEFVTRFG QRDFTVASPAEFVTRFGGNKVIEKVLIANN R D F T R F 2 1 0 1 0 0 1 0 0 0 0 0 0 2 1 1 2 0 0 2 0 0 13 0 1438.7092 Q13085;O00763;A0A087X0W4;A0A0C4DGT1;S4R3S7;A0A087WVR6 Q13085 99 111 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.00029104 89.548 By MS/MS 3 0.99781 0.98138 12.423 3 Median 0.99781 0.98138 12.423 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20604000 9523500 11080000 20604000 9523500 11080000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4196 2784 4367 21680;21681;21682 22262;22263;22264 22263 3 DFTVSAMHGDMDQK TRRKVDWLTEKMHARDFTVSAMHGDMDQKE RDFTVSAMHGDMDQKERDVIMREFRSGSSR R D F Q K E 1 0 0 3 0 1 0 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 14 0 1580.6599 P60842;J3KT12;J3KSZ0;J3QL52 P60842 296 309 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 1.6354E-14 137.01 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 6 2 1.1358 1.0568 21.064 19 Median 1.1419 1.0568 8.3307 5 0 Median 1.1048 0.94704 6.7528 6 0 Median 1.297 1.2604 22.074 6 1 Median 1.1099 0.99669 1.2551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249350000 111330000 138020000 38078000 16737000 21340000 82255000 39587000 42668000 110190000 46264000 63928000 18824000 8737600 10086000 0 0 0 0 0 0 4197 2529 4368;4369 21683;21684;21685;21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701 22265;22266;22267;22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283 22274 1207;1208 19 DFTVSAMHGDMDQKER TRRKVDWLTEKMHARDFTVSAMHGDMDQKE FTVSAMHGDMDQKERDVIMREFRSGSSRVL R D F E R D 1 1 0 3 0 1 1 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 16 1 1865.8036 P60842;J3KT12;J3KSZ0;J3QL52 P60842 296 311 EIF4A1 Eukaryotic initiation factor 4A-I yes no 3 1.6636E-10 127.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 5 2 1.0686 1.0797 19.357 17 Median 1.0686 1.0797 17.364 5 0 Median 1.181 1.1123 25.457 3 0 Median 1.3117 1.4092 20.062 2 0 Median 1.0137 0.9694 12.289 5 1 Median NaN NaN NaN 0 0 Median 1.1197 1.0215 10.202 2 0 Median 171830000 77751000 94076000 53097000 24263000 28835000 10117000 4184100 5933000 23690000 9953700 13736000 81913000 37922000 43991000 0 0 0 3010000 1429100 1580900 4198 2529 4370;4371;4372 21702;21703;21704;21705;21706;21707;21708;21709;21710;21711;21712;21713;21714;21715;21716;21717;21718 22284;22285;22286;22287;22288;22289;22290;22291;22292;22293;22294;22295;22296;22297;22298 22286 1207;1208 15 DFVAEPMGEKPVGSLAGIGEVLGK ______________________________ KPVGSLAGIGEVLGKKLEERGFDKAYVVLG R D F G K K 2 0 0 1 0 0 3 5 0 1 2 2 1 1 2 1 0 0 0 3 0 0 24 1 2399.2406 O75531 O75531 9 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 3 0.0010745 34.405 By MS/MS 1 0.61927 0.53126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61927 0.53126 NaN 1 1 Median 7544700 3497400 4047300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7544700 3497400 4047300 4199 1682 4373 21719 22299 22299 1 DFVAPHLAQPTGSQSPPPGSK AEVLLDSDGEFLPVRDFVAPHLAQPTGSQS LAQPTGSQSPPPGSKRLAFLRWEFPNFNSR R D F S K R 2 0 0 1 0 2 0 2 1 0 1 1 0 1 5 3 1 0 0 1 0 0 21 0 2117.0542 Q969Z0;H7C4R5 Q969Z0 539 559 TBRG4 Protein TBRG4 yes no 3 2.9437E-12 72.644 By MS/MS By MS/MS 1 1 0.60784 0.54627 29.558 2 Median 0.4726 0.44323 NaN 1 1 Median 0.78179 0.67325 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15719000 10195000 5523900 12882000 8775800 4106400 2836900 1419400 1417500 0 0 0 0 0 0 0 0 0 0 0 0 4200 3591 4374 21720;21721 22300;22301 22300 2 DFVASIDATYAK NNAFEELVAFQRALKDFVASIDATYAKQYE ALKDFVASIDATYAKQYEEFYVGLEGSFGS K D F A K Q 3 0 0 2 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 1 0 0 12 0 1299.6347 P25205;J3KQ69;A0A499FHX9 P25205 82 93 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0037345 45.368 By matching By MS/MS 1 1 1.0244 1.019 1.0799 2 Median NaN NaN NaN 0 0 Median 1.1375 1.0268 NaN 1 0 Median 0.92254 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3788900 1915400 1873500 0 0 0 751570 357730 393840 3037300 1557600 1479700 0 0 0 0 0 0 0 0 0 4201 2129 4375 21722;21723 22302;22303 22303 2 DFVDHIDLVDPVDGVVLVDPEYLK KASPNGKLTVYLGKRDFVDHIDLVDPVDGV DPVDGVVLVDPEYLKERRVYVTLTCAFRYG R D F L K E 0 0 0 6 0 0 1 1 1 1 3 1 0 1 2 0 0 0 1 6 0 0 24 0 2710.3742 P49407;E9PM35 P49407 26 49 ARRB1 Beta-arrestin-1 yes no 3 9.6579E-08 39.288 By MS/MS 1 0.6489 0.6415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6489 0.6415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3783200 2173200 1610000 0 0 0 0 0 0 3783200 2173200 1610000 0 0 0 0 0 0 0 0 0 4202 2381 4376 21724 22304;22305 22304 2 DFVEDDTTHG NKVSHIDVITAEMAKDFVEDDTTHG_____ AEMAKDFVEDDTTHG_______________ K D F H G - 0 0 0 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1134.4465 Q9UQE7 Q9UQE7 1208 1217 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0024082 75.109 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3749200 0 0 0 0 0 3749200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4203 4362 4377 21725 22306 22306 1 DFVNYLVR GNSTNKKDAQSNAARDFVNYLVRINEIKSE AQSNAARDFVNYLVRINEIKSEEVPAFGVA R D F V R I 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 8 0 1024.5342 Q08211 Q08211 64 71 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0024523 120.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 11 3 7 2 1.3423 1.3183 20.255 35 Median 1.3945 1.3492 28.682 6 0 Median 1.5195 1.3011 30.776 6 0 Median 1.3341 1.3511 17.037 11 2 Median 1.5108 1.283 13.31 3 0 Plateau 1.2683 1.263 5.262 7 0 Median 1.5829 1.3188 5.5177 2 0 Median 312220000 133560000 178660000 35301000 14601000 20700000 20896000 8638000 12258000 89611000 39371000 50240000 5345800 2160300 3185500 147080000 63431000 83649000 13988000 5361300 8626600 4204 2736 4378 21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755;21756;21757;21758;21759;21760 22307;22308;22309;22310;22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323;22324;22325;22326;22327;22328;22329;22330;22331;22332;22333;22334;22335;22336;22337;22338;22339;22340;22341;22342;22343;22344 22316 38 DFVSEQLTSLLVNGVQLPALGENKK VEIAGPGFINVHLRKDFVSEQLTSLLVNGV LVNGVQLPALGENKKVIVDFSSPNIAKEMH K D F K K V 1 0 2 1 0 2 2 2 0 0 5 2 0 1 1 2 1 0 0 3 0 0 25 1 2698.4541 P54136 P54136 169 193 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.054697 6.5042 By MS/MS 1 0.98642 0.94703 NaN 1 Median 0.98642 0.94703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 629830 334980 294850 629830 334980 294850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4205 2480 4379 21761 22345 22345 1 DFVTTRPALK SEGEIKYFIDKQMLRDFVTTRPALKELLKE KQMLRDFVTTRPALKELLKEALNMERNNRY R D F L K E 1 1 0 1 0 0 0 0 0 0 1 1 0 1 1 0 2 0 0 1 0 0 10 1 1146.6397 Q9UN81 Q9UN81 305 314 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 0.029276 49.418 By MS/MS By matching By matching 1 1 1 0.96176 0.84478 44.981 3 Median 0.67722 0.72558 NaN 1 0 Median 1.804 1.6873 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96176 0.84478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10075000 5351300 4724100 7103400 4178200 2925200 1907400 679090 1228300 0 0 0 1064600 494020 570580 0 0 0 0 0 0 4206 4340 4380 21762;21763;21764 22346 22346 1 DFYAAHPSADAANGSNEDRGEVADEDKR KLVPGLFKNEMKRRRDFYAAHPSADAANGS GSNEDRGEVADEDKRIITDDEIISLSIEFF R D F K R I 6 2 2 5 0 0 3 2 1 0 0 1 0 1 1 2 0 0 1 1 0 0 28 2 3006.2976 R4GMX3;Q5T8Z4;P35226 R4GMX3 239 266 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 yes no 4;5 1.8969E-09 48.337 By MS/MS By MS/MS 3 2 0.67118 0.78854 15.635 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61466 0.78854 21.224 3 0 Median 0.8739 0.79011 2.0492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39443000 22406000 17037000 0 0 0 0 0 0 35892000 20700000 15192000 3551300 1706400 1845000 0 0 0 0 0 0 4207 4503 4381 21765;21766;21767;21768;21769 22347;22348;22349;22350;22351;22352 22349 6 DFYDKIEAK YELLEAVEILSKLPKDFYDKIEAKKWQERK LSKLPKDFYDKIEAKKWQERKEALESVEVL K D F A K K 1 0 0 2 0 0 1 0 0 1 0 2 0 1 0 0 0 0 1 0 0 0 9 1 1127.5499 Q14008 Q14008 283 291 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0021744 124.74 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.4507 1.3866 38.493 5 Median NaN NaN NaN 0 0 Median 0.61664 0.6227 NaN 1 0 Median 1.4507 1.6827 NaN 1 1 Median 1.3445 1.2755 11.812 2 0 Median NaN NaN NaN 0 0 Median 1.5633 1.4136 NaN 1 0 Median 32805000 13662000 19143000 0 0 0 1028300 606700 421620 20336000 7997000 12339000 10259000 4594800 5664600 0 0 0 1181600 463150 718460 4208 2850 4382 21770;21771;21772;21773;21774 22353;22354;22355 22355 3 DFYFSVK KEQIGKVDEIFGQLRDFYFSVKLSENMKAS DEIFGQLRDFYFSVKLSENMKASSFKKLQK R D F V K L 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 7 0 904.43307 Q9NY12 Q9NY12 122 128 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.031276 49.358 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.5191 1.2579 16.019 4 Median NaN NaN NaN 0 0 Median 1.5484 1.3425 NaN 1 0 Median 1.0023 0.93939 NaN 1 0 Median 1.5482 1.275 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4906 1.2409 NaN 1 0 Median 14516000 6994600 7521600 0 0 0 154010 66212 87795 13427000 6582100 6845100 449110 173040 276060 0 0 0 485950 173270 312680 4209 4171 4383 21775;21776;21777;21778 22356;22357;22358 22357 3 DFYMTDSISR QLLADPLVPPQLTIKDFYMTDSISRASQTM QLTIKDFYMTDSISRASQTMAKCVKAVTEG K D F S R A 0 1 0 2 0 0 0 0 0 1 0 0 1 1 0 2 1 0 1 0 0 0 10 0 1233.5336 P28331;B4DJ81 P28331 693 702 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0010774 68.735 By MS/MS By matching By MS/MS 1 2 1 1.2552 1.1425 21.121 4 Median 1.0162 0.97497 NaN 1 0 Median 1.5866 1.3849 4.7864 2 0 Median 0.89529 0.9531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9288200 4263500 5024700 4678400 2095800 2582500 2537500 1032800 1504600 2072300 1134800 937520 0 0 0 0 0 0 0 0 0 4210 2165 4384 21779;21780;21781;21782 22359;22360 22359 2 DFYPLTFFTAR YEGKLMASGKQPAHKDFYPLTFFTARGEDV PAHKDFYPLTFFTARGEDVQEKNSTAFYNN K D F A R G 1 1 0 1 0 0 0 0 0 0 1 0 0 3 1 0 2 0 1 0 0 0 11 0 1376.6765 J3QS41;P42694 J3QS41 897 907 HELZ Probable helicase with zinc finger domain yes no 2 0.03568 29.473 By MS/MS 1 0.97004 0.97188 NaN 1 Median 0.97004 0.97188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 990760 516910 473850 990760 516910 473850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4211 1355 4385 21783 22361 22361 1 DFYVAFQDLPTR LKTFVKDRKEIPLAKDFYVAFQDLPTRHKI LAKDFYVAFQDLPTRHKIRELTSSRIGLLT K D F T R H 1 1 0 2 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 12 0 1470.7143 Q14566 Q14566 109 120 MCM6 DNA replication licensing factor MCM6 yes yes 2 5.4737E-06 98.943 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.86663 0.83484 17.706 5 Median 0.86663 0.83484 NaN 1 0 Median 1.0318 0.89157 NaN 1 0 Median 0.75961 0.80643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97052 0.89314 34.101 2 0 Median 30844000 16519000 14325000 12454000 6834200 5620300 7242800 3408700 3834100 11045000 6229800 4815700 0 0 0 0 0 0 100920 45957 54963 4212 2881 4386 21784;21785;21786;21787;21788 22362;22363;22364;22365;22366;22367;22368;22369 22366 8 DGAAYFYGPIFIHPEETEHEPTK LVRPRVGRIEKVWVRDGAAYFYGPIFIHPE PIFIHPEETEHEPTKMFYKKEVFLSNLEET R D G T K M 2 0 0 1 0 0 4 2 2 2 0 1 0 2 3 0 2 0 2 0 0 0 23 0 2647.2231 Q86U86;E7EVG2 Q86U86 1186 1208 PBRM1 Protein polybromo-1 yes no 3;4 0.00066192 26.627 By MS/MS By matching 2 1 0.57236 0.6377 31.154 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52559 0.58274 12.747 2 0 Median 1.0829 0.97678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16984000 10600000 6384700 0 0 0 0 0 0 16832000 10535000 6297300 152590 65135 87455 0 0 0 0 0 0 4213 3273 4387 21789;21790;21791 22370;22371 22370 2 DGAFAEFLR GKISEMGSYQELLARDGAFAEFLRTYASTE QELLARDGAFAEFLRTYASTEQEQDAEENG R D G L R T 2 1 0 1 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 9 0 1024.4978 A0A0A0MS99;I3L4X2;P33527 A0A0A0MS99 533 541 ABCC1 Multidrug resistance-associated protein 1 yes no 2 0.016483 42.599 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.90624 0.91306 21.769 6 Median 0.90681 0.9147 17.717 3 0 Plateau 1.2801 1.1336 NaN 1 0 Median 0.81569 0.91143 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2737 1.2577 NaN 1 0 Median NaN NaN NaN 0 0 Median 4930800 2701700 2229200 3058700 1756200 1302500 392260 150870 241390 651640 339690 311950 0 0 0 828270 454960 373310 0 0 0 4214 178 4388 21792;21793;21794;21795;21796;21797 22372;22373 22372 2 DGAGKYFLWVVKFNSLNELVDYHR SVKFGNDVQHFKVLRDGAGKYFLWVVKFNS VVKFNSLNELVDYHRSTSVSRNQQIFLRDI R D G H R S 1 1 2 2 0 0 1 2 1 0 3 2 0 2 0 1 0 1 2 3 0 0 24 2 2869.4551 P62993 P62993 113 136 GRB2 Growth factor receptor-bound protein 2 yes yes 4 0.067474 6.9526 By MS/MS 1 0.69231 0.78887 NaN 1 Median NaN NaN NaN 0 0 Median 0.69231 0.78887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2696100 1222500 1473700 0 0 0 2696100 1222500 1473700 0 0 0 0 0 0 0 0 0 0 0 0 4215 2613 4389 21798 22374 22374 1 DGAGNSFDLSSLSR QYACPPFDLTECSFKDGAGNSFDLSSLSRY KDGAGNSFDLSSLSRYSDNWEAITGTGDPE K D G S R Y 1 1 1 2 0 0 0 2 0 0 2 0 0 1 0 4 0 0 0 0 0 0 14 0 1424.6532 P11717 P11717 1373 1386 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.00010444 77.593 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4216 1969 4390 21799 22375 22375 1 DGANIVIAAK ASRGIGKAIALKAAKDGANIVIAAKTAQPH LKAAKDGANIVIAAKTAQPHPKLLGTIYTA K D G A K T 3 0 1 1 0 0 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 10 0 970.54475 Q6YN16 Q6YN16 33 42 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 2 0.0031006 57.931 By MS/MS By MS/MS By matching By matching 1 1 2 2 1.0393 0.98311 28.317 5 Median 1.0393 0.96224 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89827 0.93341 7.3358 2 0 Median 1.7876 1.5505 13.381 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29323000 13563000 15760000 13428000 6466800 6961000 0 0 0 8729900 4255800 4474200 7165600 2840800 4324700 0 0 0 0 0 0 4217 3195 4391 21800;21801;21802;21803;21804;21805 22376;22377;22378 22377 3 DGATILTHAYSR LSRNKIADLCHTFIKDGATILTHAYSRVVL FIKDGATILTHAYSRVVLRVLEAAVAAKKR K D G S R V 2 1 0 1 0 0 0 1 1 1 1 0 0 0 0 1 2 0 1 0 0 0 12 0 1303.6521 Q14232;F5H0D0 Q14232 121 132 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2;3 0.00023098 100.48 By MS/MS By MS/MS By MS/MS 2 2 2 1.0966 1.0012 63.718 6 Median 1.0966 1.0266 3.3843 2 2 Median 0.7725 0.64326 62.417 2 1 Median NaN NaN NaN 0 0 Median 0.61634 0.51436 106.86 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60648000 31996000 28651000 31106000 14884000 16222000 21869000 12062000 9806800 0 0 0 7673000 5050800 2622200 0 0 0 0 0 0 4218 2866 4392 21806;21807;21808;21809;21810;21811 22379;22380;22381;22382;22383;22384 22382 6 DGAVNGPSVVGDQTPIEPQTSIER EVSEKPGQEAPVLPKDGAVNGPSVVGDQTP VGDQTPIEPQTSIERLTETKDGSGLEEKVR K D G E R L 1 1 1 2 0 2 2 3 0 2 0 0 0 0 3 2 2 0 0 3 0 0 24 0 2465.2034 P49321 P49321 377 400 NASP Nuclear autoantigenic sperm protein yes yes 3 3.13E-09 67.979 By MS/MS 1 0.54369 0.52349 NaN 1 Median 0.54369 0.52349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16033000 10875000 5158500 16033000 10875000 5158500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4219 2376 4393 21812 22385 22385 1 DGAWGAFR LQKVLQGDLVMNVYRDGAWGAFRHFLLEED LVMNVYRDGAWGAFRHFLLEEDKPEEPTAH R D G F R H 2 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 8 0 878.4035 P49327;A0A0U1RQF0 P49327 1508 1515 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.003424 97.071 By MS/MS By MS/MS By matching 3 3 1 1.3516 1.2441 12.322 7 Median 1.1505 1.1613 14.984 3 0 Median 1.4584 1.2441 6.7783 3 0 Median 1.3482 1.5 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31125000 14292000 16833000 14919000 7511600 7407000 15164000 6332300 8831500 1043000 448100 594880 0 0 0 0 0 0 0 0 0 4220 2377 4394 21813;21814;21815;21816;21817;21818;21819 22386;22387;22388;22389;22390 22387 5 DGDFENPVPYTGAVK YKLDKESYPVFYLFRDGDFENPVPYTGAVK DGDFENPVPYTGAVKVGAIQRWLKGQGVYL R D G V K V 1 0 1 2 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 2 0 0 15 0 1607.7468 P30040;F8VY02 P30040 123 137 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 0.00015661 77.124 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.81095 0.76046 12.518 5 Median 0.6489 0.66599 4.3529 2 0 Median 1.04 0.87211 NaN 1 0 Median 0.81095 0.76046 NaN 1 0 Median 1.0006 0.82783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63696000 34129000 29567000 26931000 15050000 11881000 7512200 3587600 3924600 27657000 14753000 12903000 1596000 738110 857920 0 0 0 0 0 0 4221 2178 4395 21820;21821;21822;21823;21824 22391;22392;22393;22394;22395 22394 5 DGDSVMVLPTIPEEEAKK QLTAEKRVATPVDWKDGDSVMVLPTIPEEE SVMVLPTIPEEEAKKLFPKGVFTKELPSGK K D G K K L 1 0 0 2 0 0 3 1 0 1 1 2 1 0 2 1 1 0 0 2 0 0 18 1 1956.9714 P30041 P30041 183 200 PRDX6 Peroxiredoxin-6 yes yes 3 0.076922 3.4405 By MS/MS 1 0.86433 0.79124 NaN 1 Median NaN NaN NaN 0 0 Median 0.86433 0.79124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2266500 1220700 1045800 0 0 0 2266500 1220700 1045800 0 0 0 0 0 0 0 0 0 0 0 0 4222 2179 4396 21825 22396 22396 1 DGDVTVTNDGATILSMMDVDHQIAK TSLGPNGLDKMMVDKDGDVTVTNDGATILS ATILSMMDVDHQIAKLMVELSKSQDDEIGD K D G A K L 2 0 1 5 0 1 0 2 1 2 1 1 2 0 0 1 3 0 0 3 0 0 25 0 2645.2313 P48643;B7ZAR1;E9PCA1 P48643 65 89 CCT5 T-complex protein 1 subunit epsilon yes no 3 0.06295 6.3637 By MS/MS 1 1.2644 1.0923 NaN 1 Median NaN NaN NaN 0 0 Median 1.2644 1.0923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1570500 687470 883000 0 0 0 1570500 687470 883000 0 0 0 0 0 0 0 0 0 0 0 0 4223 2364 4397 21826 22397 22397 1 DGEDLMDESVLK RLKEFLKNYLTNLLKDGEDLMDESVLKFYT LLKDGEDLMDESVLKFYTQQWEDYRFSSKV K D G L K F 0 0 0 3 0 0 2 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 0 1349.6021 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4;A0A590UJA0;A0A590UJM8 A0A0C4DGX4 82 93 CUL1 Cullin-1 yes no 2 0.00026003 83.869 By MS/MS By matching 1 1 1.2338 1.2067 6.1935 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.048 1.155 NaN 1 0 Median 1.4525 1.2607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5868400 2698900 3169500 0 0 0 0 0 0 4136500 1893600 2242900 1731900 805270 926630 0 0 0 0 0 0 4224 256 4398 21827;21828 22398 22398 1 DGEDQTQDTELVETRPAGDGTFQK ALGFYPAEITLTWQRDGEDQTQDTELVETR ELVETRPAGDGTFQKWAAVVVPSGEEQRYT R D G Q K W 1 1 0 4 0 3 3 3 0 0 1 1 0 1 1 0 4 0 0 1 0 0 24 1 2636.1838 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A1W2PRU9;P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0 P04439 244 267 HLA-C;HLA-A HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, A-3 alpha chain no no 3 4.9621E-08 45.784 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.77148 0.81522 9.2471 4 Median 0.73917 0.79198 NaN 1 0 Median 0.94645 0.88262 NaN 1 0 Median 0.73843 0.83914 NaN 1 0 Median 0.8052 0.71164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15222000 8081500 7140700 8571000 4618100 3952800 1052900 487580 565340 5238500 2799100 2439400 359760 176670 183080 0 0 0 0 0 0 4225 348;314 4399 21829;21830;21831;21832 22399;22400;22401 22399 3 DGEDQTQDTELVETRPAGDR ALGFYPAEITLTWQRDGEDQTQDTELVETR TQDTELVETRPAGDRTFQKWAAVVVPSGEE R D G D R T 1 2 0 4 0 2 3 2 0 0 1 0 0 0 1 0 3 0 0 1 0 0 20 1 2230.9938 A0A1W2PPR8;P01889;A0A140T951 A0A1W2PPR8 244 263 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain no no 3 1.936E-07 56.121 By MS/MS By MS/MS 1 1 0.95962 0.95124 40.164 2 Median 0.68055 0.71606 NaN 1 0 Median 1.3531 1.2637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13136000 6144600 6991500 7803000 4133000 3670100 5333000 2011600 3321400 0 0 0 0 0 0 0 0 0 0 0 0 4226 339 4400 21833;21834 22402;22403;22404 22404 3 DGEEAGAYDGPR NKYGVSGYPTLKIFRDGEEAGAYDGPRTAD IFRDGEEAGAYDGPRTADGIVSHLKKQAGP R D G P R T 2 1 0 2 0 0 2 3 0 0 0 0 0 0 1 0 0 0 1 0 0 0 12 0 1235.5055 P30101;H7BZJ3 P30101 108 119 PDIA3 Protein disulfide-isomerase A3 no no 2 4.8065E-06 123.88 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.90089 0.8822 6.7562 5 Median 0.83628 0.84104 9.3807 2 0 Median 0.97858 0.82415 NaN 1 0 Median 0.8381 0.8822 NaN 1 0 Median 1.0768 0.92959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16140000 8202400 7937300 4828800 2504700 2324100 8156400 4101800 4054600 1916800 1041500 875270 1237800 554390 683390 0 0 0 0 0 0 4227 2189;1251 4401 21835;21836;21837;21838;21839 22405;22406;22407;22408;22409;22410;22411;22412;22413 22411 9 DGELHIAEHPAGHLVLK AIASLAATGLHPGGKDGELHIAEHPAGHLV ELHIAEHPAGHLVLKWLIEQDKKMKENGRE K D G L K W 2 0 0 1 0 0 2 2 3 1 3 1 0 0 1 0 0 0 0 1 0 0 17 0 1834.969 Q15397 Q15397 543 559 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 4 0.00013744 41.695 By matching By MS/MS 1 2 0.95303 0.97279 19.386 3 Plateau 0.64121 0.67488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95206 0.93882 5.0275 2 1 Median NaN NaN NaN 0 0 Median 22422000 11308000 11115000 2882200 1811800 1070300 0 0 0 0 0 0 0 0 0 19540000 9495800 10044000 0 0 0 4228 2947 4402 21840;21841;21842 22414;22415;22416 22415 3 DGENYVVLLDSTLPR SLGQSLFFHFPPLLRDGENYVVLLDSTLPR DGENYVVLLDSTLPRSQYDYILPQVSFTAV R D G P R S 0 1 1 2 0 0 1 1 0 0 3 0 0 0 1 1 1 0 1 2 0 0 15 0 1689.8574 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;H3BUC9;J3KN36;P69849;Q5JPE7;A0A087WTD5 J3KN36 1106 1120 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.0011422 42.556 By MS/MS 1 0.9026 0.91132 NaN 1 Median 0.9026 0.91132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1830600 1171300 659250 1830600 1171300 659250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4229 117;1301 4403 21843 22417;22418;22419 22418 3 DGEQHEDLNEVAK WNIFNRMPIARKIIKDGEQHEDLNEVAKLF IKDGEQHEDLNEVAKLFNIHED________ K D G A K L 1 0 1 2 0 1 3 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1482.6587 O95831;E9PMA0 O95831 594 606 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2;3 5.6787E-05 126.76 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.2498 1.1126 17.822 7 Median 0.97283 0.93007 11.382 2 0 Median 1.4672 1.23 2.5318 2 0 Median 1.0455 1.1126 NaN 1 0 Median 1.4866 1.2718 24.207 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34855000 15139000 19716000 10433000 5127600 5305000 19793000 8114600 11679000 1661800 661810 999990 2966800 1234700 1732100 0 0 0 0 0 0 4230 1797 4404 21844;21845;21846;21847;21848;21849;21850 22420;22421;22422;22423;22424;22425 22424 6 DGETLEELMK DIELSRNEALAALLRDGETLEELMKLSPEE AALLRDGETLEELMKLSPEELLLRWANFHL R D G M K L 0 0 0 1 0 0 3 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1163.538 P13797;A0A0A0MSQ0 P13797 257 266 PLS3 Plastin-3 yes no 2 0.00040727 100.02 By MS/MS By MS/MS By MS/MS 6 4 3 1.0906 1.0216 36.223 13 Median 0.99986 0.96644 49.472 6 0 Median 1.2004 1.0238 12.747 4 0 Median 1.0906 1.1407 10.832 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 278540000 126640000 151900000 104620000 49038000 55581000 168890000 75176000 93712000 5034100 2428600 2605500 0 0 0 0 0 0 0 0 0 4231 1995 4405;4406 21851;21852;21853;21854;21855;21856;21857;21858;21859;21860;21861;21862;21863 22426;22427;22428;22429;22430;22431 22428 784 6 DGETPDPEDPSR VSVPKELVALMSAIRDGETPDPEDPSRKIY AIRDGETPDPEDPSRKIYKFIQKVPIPCYL R D G S R K 0 1 0 3 0 0 2 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 12 0 1313.5372 P09960 P09960 176 187 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.00058963 73.067 By MS/MS By MS/MS 1 1 0.66717 0.6228 12.276 2 Median 0.56836 0.57102 NaN 1 0 Median 0.78316 0.67928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5205500 2981600 2223900 2371800 1438100 933680 2833700 1543500 1290200 0 0 0 0 0 0 0 0 0 0 0 0 4232 1924 4407 21864;21865 22432;22433;22434;22435 22435 4 DGEVDATASSIPELER EEESIAAVPGRRGRRDGEVDATASSIPELE GEVDATASSIPELERQIEKLSKRQLFFRKK R D G E R Q 2 1 0 2 0 0 3 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 16 0 1687.7901 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1043 1058 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 1.4611E-09 119.76 By MS/MS By MS/MS 1 1 0.73809 0.79444 1.1095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71196 0.78824 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76519 0.8007 NaN 1 0 Median NaN NaN NaN 0 0 Median 8407600 4472200 3935400 0 0 0 0 0 0 3683700 1970700 1713000 0 0 0 4723900 2501500 2222400 0 0 0 4233 1065 4408 21866;21867 22436;22437;22438 22438 3 DGFGGLAAAR AAHIISELILTAQERDGFGGLAAARGRGRG TAQERDGFGGLAAARGRGRGRGDWSVGAPG R D G A R G 3 1 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 0 933.46683 Q96I24 Q96I24 328 337 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.00056295 93.195 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 2 1.0974 1.0613 13.95 8 Median 0.80219 0.78913 NaN 1 0 Median 1.005 0.87012 NaN 1 0 Median 1.0718 1.08 7.4619 2 1 Median 1.3152 1.0994 NaN 1 0 Median 1.1544 1.1597 NaN 1 0 Median 1.1726 1.017 11.057 2 0 Median 46144000 21544000 24601000 3781700 1958500 1823100 2188000 1204400 983590 26136000 12065000 14070000 2651100 1140900 1510200 6025900 2712400 3313500 5362300 2462100 2900100 4234 3673 4409 21868;21869;21870;21871;21872;21873;21874;21875 22439;22440;22441;22442;22443;22444 22440 6 DGFVALSK LKFNFGEEEFKFPPKDGFVALSKAPDGYIV EFKFPPKDGFVALSKAPDGYIVKSQHSGNA K D G S K A 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 0 835.44397 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 172 179 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.012627 54.611 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.204 1.0785 12.967 4 Median 1.0735 1.0408 NaN 1 0 Median 1.1405 0.99938 NaN 1 0 Median 1.2709 1.3398 NaN 1 0 Median 1.285 1.1174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13134000 5781600 7352800 3075400 1387600 1687800 3843100 1676200 2166900 5113500 2221800 2891700 1102400 496050 606370 0 0 0 0 0 0 4235 135 4410 21876;21877;21878;21879 22445;22446;22447;22448;22449;22450 22449 6 DGFVQNVHTPR LKTLSLHYFEEPELRDGFVQNVHTPRVRVD PELRDGFVQNVHTPRVRVDPDGRCAAMLVY R D G P R V 0 1 1 1 0 1 0 1 1 0 0 0 0 1 1 0 1 0 0 2 0 0 11 0 1268.6262 Q10570 Q10570 130 140 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2;3 0.00037366 63.283 By matching By MS/MS By MS/MS 1 3 2 1.0635 1.0216 24.295 4 Median NaN NaN NaN 0 0 Median 1.3674 1.1593 NaN 1 0 Median 0.77638 0.82192 29.881 2 0 Median 1.1813 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21372000 9792000 11580000 0 0 0 3965000 1599200 2365800 16365000 7678700 8686200 1042400 514200 528210 0 0 0 0 0 0 4236 2753 4411 21880;21881;21882;21883;21884;21885 22451;22452;22453;22454;22455 22451 5 DGGGRGPDELEGPDSK GPGPSLRPQNSTTWRDGGGRGPDELEGPDS GGGRGPDELEGPDSKLHHGHDPRGGLQPSG R D G S K L 0 1 0 3 0 0 2 5 0 0 1 1 0 0 2 1 0 0 0 0 0 0 16 1 1584.7016 P48634 P48634 209 224 PRRC2A Protein PRRC2A yes yes 3 0.0029191 27.85 By MS/MS 1 0.69958 0.71598 NaN 1 Median 0.69958 0.71598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1559300 871570 687750 1559300 871570 687750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4237 2363 4412 21886 22456 22456 1 DGGNQEVEIAR GEVSILIRSRTKSNKDGGNQEVEIARCHKG KSNKDGGNQEVEIARCHKGQYFGELALVTN K D G A R C 1 1 1 1 0 1 2 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 11 0 1186.5578 P13861;H7C330 P13861 319 329 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.00034395 71.614 By MS/MS 1 1.1753 1.0161 NaN 1 Median NaN NaN NaN 0 0 Median 1.1753 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1931300 779120 1152100 0 0 0 1931300 779120 1152100 0 0 0 0 0 0 0 0 0 0 0 0 4238 1998 4413 21887 22457 22457 1 DGGSGNSTIIVSR VENELEDLIDELLERDGGSGNSTIIVSRSG ERDGGSGNSTIIVSRSGEDESQEDVLMDEA R D G S R S 0 1 1 1 0 0 0 3 0 2 0 0 0 0 0 3 1 0 0 1 0 0 13 0 1261.6262 Q7Z6Z7 Q7Z6Z7 2359 2371 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 3.9386E-10 175.49 By MS/MS By MS/MS 1 1 1.0054 0.91044 18.719 2 Median 0.79219 0.79757 NaN 1 1 Median 1.276 1.0393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13488000 6171700 7316600 3915600 2166100 1749500 9572700 4005600 5567100 0 0 0 0 0 0 0 0 0 0 0 0 4239 3253 4414 21888;21889 22458;22459;22460 22460 3 DGGSVVGASVFYK LWCAVGVNLSGGKTRDGGSVVGASVFYKDV TRDGGSVVGASVFYKDVAGLDTEGSKQRSA R D G Y K D 1 0 0 1 0 0 0 3 0 0 0 1 0 1 0 2 0 0 1 3 0 0 13 0 1284.635 A0A087X2D8;O60271 A0A087X2D8 693 705 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.029396 44.863 By MS/MS 1 2.9919 2.6268 NaN 1 Median NaN NaN NaN 0 0 Median 2.9919 2.6268 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7786700 1359900 6426800 0 0 0 7786700 1359900 6426800 0 0 0 0 0 0 0 0 0 0 0 0 4240 134 4415 21890 22461 22461 1 DGIAVDHVVGLNTEK NLKQTIKATVENGKKDGIAVDHVVGLNTEK DGIAVDHVVGLNTEKYAETVKLKHKRSPGK K D G E K Y 1 0 1 2 0 0 1 2 1 1 1 1 0 0 0 0 1 0 0 3 0 0 15 0 1565.8049 Q8NFC6 Q8NFC6 1436 1450 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 9.0199E-05 53.374 By MS/MS By matching 3 1 0.62899 0.93979 21.882 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92288 0.98571 22.847 3 0 Plateau 0.66455 0.60231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22037000 11192000 10845000 0 0 0 0 0 0 21435000 10823000 10612000 601880 368720 233160 0 0 0 0 0 0 4241 3434 4416 21891;21892;21893;21894 22462;22463;22464 22463 3 DGIDDESYEAIFKPVMSK GAGKGKYYAVNYPLRDGIDDESYEAIFKPV DDESYEAIFKPVMSKVMEMFQPSAVVLQCG R D G S K V 1 0 0 3 0 0 2 1 0 2 0 2 1 1 1 2 0 0 1 1 0 0 18 1 2042.9507 Q13547 Q13547 230 247 HDAC1 Histone deacetylase 1 yes yes 3 3.0885E-06 55.33 By matching By matching By MS/MS By matching 1 1 1 1 1.0617 0.9923 24.588 4 Median 1.5308 1.4738 NaN 1 0 Median 0.99314 0.93964 NaN 1 0 Median 0.79625 0.83208 NaN 1 0 Median 1.1349 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9916800 5060700 4856000 414670 206100 208570 479510 205160 274350 8909400 4592800 4316600 113180 56637 56541 0 0 0 0 0 0 4242 2823 4417 21895;21896;21897;21898 22465;22466 22466 2 DGIDDESYGQIFKPIISK GAGKGKYYAVNFPMRDGIDDESYGQIFKPI DDESYGQIFKPIISKVMEMYQPSAVVLQCG R D G S K V 0 0 0 3 0 1 1 2 0 4 0 2 0 1 1 2 0 0 1 0 0 0 18 1 2024.0102 Q92769 Q92769 231 248 HDAC2 Histone deacetylase 2 yes yes 2 2.6614E-05 61.641 By MS/MS By matching 1 1 0.92993 0.95152 13.671 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82475 0.86384 NaN 1 0 Median 1.0485 1.0481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4959500 2540700 2418800 0 0 0 0 0 0 4663700 2377500 2286200 295810 163170 132640 0 0 0 0 0 0 4243 3555 4418 21899;21900 22467;22468 22468 2 DGIQLSEYLPEVK SKDSIFVKILQKLLKDGIQLSEYLPEVKDL LKDGIQLSEYLPEVKDLLQADQLGSLKSNP K D G V K D 0 0 0 1 0 1 2 1 0 1 2 1 0 0 1 1 0 0 1 1 0 0 13 0 1489.7664 Q8WUM0 Q8WUM0 1111 1123 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.048985 25.217 By matching By MS/MS 1 1 0.82961 0.80718 15.446 2 Median NaN NaN NaN 0 0 Median 0.82309 0.72367 NaN 1 0 Median 0.83618 0.90033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046600 1979000 2067700 0 0 0 2125700 1041100 1084500 1921000 937830 983130 0 0 0 0 0 0 0 0 0 4244 3492 4419 21901;21902 22469 22469 1 DGIVLGADTR KVRKTGTTIAGVVYKDGIVLGADTRATEGM GVVYKDGIVLGADTRATEGMVVADKNCSKI K D G T R A 1 1 0 2 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1015.5298 Q99436;Q5TBG5 Q99436 53 62 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type yes no 2 0.00057276 95.502 By MS/MS By MS/MS 1 1 1.0907 0.97716 8.3959 2 Median 0.97026 0.92084 NaN 1 0 Median 1.226 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25872000 11528000 14344000 14745000 7249500 7495400 11127000 4278700 6848700 0 0 0 0 0 0 0 0 0 0 0 0 4245 3744 4420 21903;21904 22470;22471;22472 22472 3 DGKLDKDEIR LSEREQFNEFRDLNKDGKLDKDEIRHWILP RDLNKDGKLDKDEIRHWILPQDYDHAQAEA K D G I R H 0 1 0 3 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 2 1187.6146 Q15293 Q15293 261 270 RCN1 Reticulocalbin-1 yes yes 2;3 0.042658 50.284 By matching By MS/MS 1 2 1.0628 1.1956 16.501 2 Median 1.0049 1.0639 NaN 1 0 Median 1.124 1.3436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1895400 349010 1546400 117490 51346 66139 1777900 297660 1480200 0 0 0 0 0 0 0 0 0 0 0 0 4246 2940 4421 21905;21906;21907 22473;22474 22473 2 DGKLVSESSDVLPK TSSSRAVVVKKIETRDGKLVSESSDVLPK_ RDGKLVSESSDVLPK_______________ R D G P K - 0 0 0 2 0 0 1 1 0 0 2 2 0 0 1 3 0 0 0 2 0 0 14 1 1472.7722 P05787;CON__P05787 P05787 470 483 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 3.6094E-07 100.55 By matching By MS/MS By MS/MS 1 4 2 1.0238 1.0928 24.038 7 Median 0.85579 0.82523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0848 1.1576 10.358 4 0 Median 0.84644 0.75439 2.8402 2 0 Median 58589000 27925000 30664000 2495500 1092700 1402800 0 0 0 0 0 0 0 0 0 39838000 17968000 21870000 16256000 8864800 7390900 + 4247 750 4422 21908;21909;21910;21911;21912;21913;21914 22475;22476;22477;22478;22479;22480;22481;22482 22475 8 DGKPVSEYIIK KSKHRNERKLSVLGKDGKPVSEYIIKTDEN VLGKDGKPVSEYIIKTDENVRKENNKKERR K D G I K T 0 0 0 1 0 0 1 1 0 2 0 2 0 0 1 1 0 0 1 1 0 0 11 1 1247.6762 Q8NFC6 Q8NFC6 805 815 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 0.042562 19.641 By MS/MS 1 0.81374 0.92491 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81374 0.92491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3063300 1440300 1623000 0 0 0 0 0 0 3063300 1440300 1623000 0 0 0 0 0 0 0 0 0 4248 3434 4423 21915 22483 22483 1 DGKYDLDFK KIVIGMDVAASEFYRDGKYDLDFKSPTDPS ASEFYRDGKYDLDFKSPTDPSRYITGDQLG R D G F K S 0 0 0 3 0 0 0 1 0 0 1 2 0 1 0 0 0 0 1 0 0 0 9 1 1099.5186 P09104;F5H0C8;U3KQP4 P09104 254 262 ENO2 Gamma-enolase;Enolase yes no 2 0.0044924 88.948 By MS/MS By matching By matching By matching 1 1 1 1 0.92888 0.88593 43.092 4 Median 0.98857 0.94677 NaN 1 0 Median 1.0254 0.96286 NaN 1 0 Median 0.38531 0.38878 NaN 1 0 Median 0.87281 0.82901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14951000 8584800 6366000 7553400 4248900 3304500 4264500 2309300 1955300 1881500 1310800 570700 1251300 715790 535530 0 0 0 0 0 0 4249 1911 4424 21916;21917;21918;21919 22484;22485 22485 2 DGKYSQVLANGLDNK YKIPDWFLNRQKDVKDGKYSQVLANGLDNK DGKYSQVLANGLDNKLREDLERLKKIRAHR K D G N K L 1 0 2 2 0 1 0 2 0 0 2 2 0 0 0 1 0 0 1 1 0 0 15 1 1620.8107 P62269;J3JS69 P62269 92 106 RPS18 40S ribosomal protein S18 yes no 2 0.0015789 53.569 By MS/MS By matching 1 1 2.7894 2.8639 109.89 2 Median 1.3154 1.3167 NaN 1 0 Median 5.9153 6.2289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7295800 2649500 4646300 5707000 2538100 3168900 1588800 111420 1477300 0 0 0 0 0 0 0 0 0 0 0 0 4250 2578 4425 21920;21921 22486 22486 1 DGLAFNALIHR PYKNVNVQNFHISWKDGLAFNALIHRHRPE ISWKDGLAFNALIHRHRPELIEYDKLRKDD K D G H R H 2 1 1 1 0 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1225.6568 O43707 O43707 194 204 ACTN4 Alpha-actinin-4 no no 2;3 0.00012696 139.88 By MS/MS By MS/MS By MS/MS 2 4 2 1.1199 1.0149 20.692 8 Median 1.1487 1.1061 2.2767 2 0 Median 1.1792 1.0149 19.74 4 0 Median 0.72118 0.77154 11.319 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54672000 25004000 29667000 32905000 14782000 18123000 18324000 8372900 9951600 3442300 1848900 1593400 0 0 0 0 0 0 0 0 0 4251 1585 4426 21922;21923;21924;21925;21926;21927;21928;21929 22487;22488;22489;22490;22491;22492;22493;22494;22495;22496 22488 10 DGLDYILGALESGK KKKDGSSSVPLSFARDGLDYILGALESGKN RDGLDYILGALESGKNSGLYDSSGEEEEDA R D G G K N 1 0 0 2 0 0 1 3 0 1 3 1 0 0 0 1 0 0 1 0 0 0 14 0 1449.7351 Q5C9Z4 Q5C9Z4 214 227 NOM1 Nucleolar MIF4G domain-containing protein 1 yes yes 2 0.049944 24.291 By MS/MS 1 1.2689 1.3216 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2689 1.3216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 655850 292690 363160 0 0 0 0 0 0 655850 292690 363160 0 0 0 0 0 0 0 0 0 4252 3043 4427 21930 22497 22497 1 DGLGGLPDIVR DVKIVILPDYLEIARDGLGGLPDIVRDRVT EIARDGLGGLPDIVRDRVTSAVEALLSADS R D G V R D 0 1 0 2 0 0 0 3 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1110.6033 P45974 P45974 134 144 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0026022 52.579 By MS/MS By MS/MS 1 2 0.9572 0.82709 2.9085 3 Median 0.83808 0.8086 NaN 1 0 Median 0.98383 0.84174 2.4824 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19366000 10261000 9105400 8103200 4422200 3681000 11263000 5838800 5424400 0 0 0 0 0 0 0 0 0 0 0 0 4253 2332 4428 21931;21932;21933 22498;22499;22500;22501 22499 4 DGLILTSR MNGGHYTYSENRVEKDGLILTSRGPGTSFE SENRVEKDGLILTSRGPGTSFEFALAIVEA K D G S R G 0 1 0 1 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 873.49198 Q99497;K7ELW0;K7EN27 Q99497 149 156 PARK7 Protein deglycase DJ-1 yes no 2 0.0033382 98.997 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2076 1.1414 10.025 5 Median 1.0989 1.0392 13.274 2 0 Median 1.3968 1.1815 NaN 1 0 Median 1.2091 1.1617 NaN 1 1 Median 1.2076 0.99806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117320000 51842000 65482000 89082000 38981000 50100000 16213000 7092300 9120300 10814000 5149000 5664800 1214900 618950 595990 0 0 0 0 0 0 4254 3749 4429 21934;21935;21936;21937;21938 22502;22503;22504;22505;22506 22503 5 DGLLCGETGGGGGSALGPGGGGGGGGGGGGGGPGHEQEEDYR EVELVEPGLGVGGERDGLLCGETGGGGGSA GGGGGPGHEQEEDYRYEVLTAEQILQHMVE R D G Y R Y 1 1 0 2 1 1 4 23 1 0 3 0 0 0 2 1 1 0 1 0 0 0 42 0 3612.5156 Q9Y4X5;H3BSK4;H3BNB9 Q9Y4X5 59 100 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes no 5 0.062042 1.4791E-11 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249500 249500 0 0 0 0 0 0 0 0 0 0 249500 249500 0 0 0 0 0 0 0 4255 4450 4430 21939 22507 22507 1 DGLLPENTFIVGYAR LAKKKIYPTIWWLFRDGLLPENTFIVGYAR DGLLPENTFIVGYARSRLTVADIRKQSEPF R D G A R S 1 1 1 1 0 0 1 2 0 1 2 0 0 1 1 0 1 0 1 1 0 0 15 0 1663.857 P11413;E7EUI8;E9PD92;E7EM57 P11413 58 72 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.00021048 73.781 By MS/MS By MS/MS 1 1 0.76961 0.70777 5.7461 2 Median 0.68114 0.67959 NaN 1 0 Median 0.86956 0.73712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7816600 4423000 3393600 2743800 1640800 1103000 5072900 2782300 2290600 0 0 0 0 0 0 0 0 0 0 0 0 4256 1964 4431 21940;21941 22508;22509;22510;22511 22511 4 DGLLPTGLGQR LQPSGAKASIAQAVRDGLLPTGLGQRLLEA QAVRDGLLPTGLGQRLLEAQVASGFLVDPL R D G Q R L 0 1 0 1 0 1 0 3 0 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1125.6142 P58107;A0A075B730 P58107 1268 1278 EPPK1 Epiplakin yes no 2 0.00019153 76.064 By MS/MS By MS/MS By matching 1 2 1 1.0231 0.90539 50.397 4 Median 1.0491 1.0202 NaN 1 0 Median 1.1269 0.95122 23.874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32348 0.37012 NaN 1 0 Median NaN NaN NaN 0 0 Median 38921000 18781000 20140000 21423000 9818900 11604000 14465000 7007900 7457100 0 0 0 0 0 0 3033100 1954200 1078900 0 0 0 4257 2520 4432 21942;21943;21944;21945 22512;22513;22514 22512 3 DGLSEAAAQSR AVIPETEAVRRIVERDGLSEAAAQSRLQSQ IVERDGLSEAAAQSRLQSQMSGQQLVEQSH R D G S R L 3 1 0 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1103.5207 Q13057 Q13057 504 514 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.00096639 61.65 By MS/MS By MS/MS 1 1 1.713 1.6075 13.146 2 Median 1.7391 1.7641 NaN 1 0 Median 1.6873 1.4648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4520600 1582200 2938400 1122500 449760 672700 3398100 1132400 2265700 0 0 0 0 0 0 0 0 0 0 0 0 4258 2783 4433 21946;21947 22515;22516;22517 22516 3 DGLTDVYNK STPYGGVKLEDLIVKDGLTDVYNKIHMGSC EDLIVKDGLTDVYNKIHMGSCAENTAKKLN K D G N K I 0 0 1 2 0 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 1023.4873 P24752;H0YEL7 P24752 182 190 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 0.049787 31.074 By matching By MS/MS 1 1 1.6309 1.3852 30.651 2 Median NaN NaN NaN 0 0 Median 1.3089 1.1153 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0321 1.7204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19429000 7868500 11560000 0 0 0 16437000 6746400 9690400 0 0 0 2991700 1122100 1869600 0 0 0 0 0 0 4259 2126 4434 21948;21949 22518 22518 1 DGLTISFTK KGLDVKSEACQRFFRDGLTISFTKILTDEA CQRFFRDGLTISFTKILTDEAVSGWKFEIH R D G T K I 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 0 9 0 980.51786 Q93008;O00507 Q93008 122 130 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0098224 48.794 By MS/MS By MS/MS By matching 2 2 1 1.2522 1.1041 84.745 5 Median 2.7891 2.7813 130.66 2 0 Median 1.3671 1.1925 11.371 2 0 Median 0.78541 0.8709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15384000 6724700 8659500 5938000 2362200 3575800 8620500 3904600 4715900 825760 457920 367840 0 0 0 0 0 0 0 0 0 4260 3573 4435 21950;21951;21952;21953;21954 22519;22520;22521 22520 3 DGMAFNALIHK GYPNVNIHNFTTSWRDGMAFNALIHKHRPD TSWRDGMAFNALIHKHRPDLIDFDKLKKSN R D G H K H 2 0 1 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 11 0 1215.607 Q01082;A0A087WUZ3;F8W6C1 Q01082 204 214 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0015026 58.676 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 0.919 0.94756 23.227 6 Median 0.99806 0.96471 NaN 1 0 Median 1.3492 1.1813 NaN 1 0 Median 0.79111 0.87288 9.0741 2 1 Median 0.80048 0.72405 NaN 1 1 Median 1.2994 1.3616 NaN 1 0 Median NaN NaN NaN 0 0 Median 66853000 36408000 30446000 12135000 6197600 5937600 6420800 2822400 3598400 40365000 22927000 17438000 2446800 1358000 1088800 5486000 3103000 2382900 0 0 0 4261 2681 4436;4437 21955;21956;21957;21958;21959;21960 22522;22523;22524;22525;22526;22527 22525 1361 6 DGMDNQGGYGSVGR GGSGMGGSGMGGYGRDGMDNQGGYGSVGRM RDGMDNQGGYGSVGRMGMGNNYSGGYGTPD R D G G R M 0 1 1 2 0 1 0 5 0 0 0 0 1 0 0 1 0 0 1 1 0 0 14 0 1411.5786 P31942 P31942 288 301 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 8.2992E-09 158.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 4 1.1094 1.0142 10.954 11 Median NaN NaN NaN 0 0 Median 1.2402 1.0366 NaN 1 0 Median 1.0059 0.99458 NaN 1 0 Median 1.1991 1.0328 9.222 2 0 Median 1.037 1.0413 6.0476 3 0 Median 1.0662 0.85632 10.017 4 1 Median 62132000 30099000 32033000 0 0 0 3528800 1590000 1938800 3868500 1686300 2182100 6641000 3078600 3562300 40752000 20123000 20630000 7341100 3621100 3720000 4262 2208 4438;4439 21961;21962;21963;21964;21965;21966;21967;21968;21969;21970;21971 22528;22529;22530;22531;22532;22533;22534;22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546 22543 942 19 DGMEYPFIGEGEPHVDGEPGDLR NEERTLEVEIEPGVRDGMEYPFIGEGEPHV GEGEPHVDGEPGDLRFRIKVVKHPIFERRG R D G L R F 0 1 0 3 0 0 4 5 1 1 1 0 1 1 3 0 0 0 1 1 0 0 23 0 2515.0962 Q9UBS4;H7C2Y5 Q9UBS4 218 240 DNAJB11 DnaJ homolog subfamily B member 11 yes no 3 4.0202E-16 68.369 By MS/MS By matching 1 1 0.71648 0.68866 17.659 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55634 0.60782 NaN 1 0 Median 0.92272 0.78025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18104000 10492000 7611900 0 0 0 0 0 0 17761000 10350000 7411200 342740 142060 200680 0 0 0 0 0 0 4263 4246 4440 21972;21973 22547;22548 22547 2 DGNASGTTLLEALDCILPPTRPTDK SANMPWFKGWKVTRKDGNASGTTLLEALDC EALDCILPPTRPTDKPLRLPLQDVYKIGGI K D G D K P 2 1 1 3 1 0 1 2 0 1 4 1 0 0 3 1 4 0 0 0 0 0 25 1 2654.3221 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 220 244 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 3 0.011493 18.248 By MS/MS By matching 2 1 0.76957 0.74705 22.528 3 Median NaN NaN NaN 0 0 Median 0.69797 0.65549 18.49 2 0 Median 0.76957 0.90067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5274400 2558800 2715600 0 0 0 4362300 2148300 2214000 912050 410410 501640 0 0 0 0 0 0 0 0 0 4264 2632 4441 21974;21975;21976 22549 22549 1 DGNASGTTLLEALDCILPPTRPTDKPLR SANMPWFKGWKVTRKDGNASGTTLLEALDC DCILPPTRPTDKPLRLPLQDVYKIGGIGTV K D G L R L 2 2 1 3 1 0 1 2 0 1 5 1 0 0 4 1 4 0 0 0 0 0 28 2 3020.5601 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 220 247 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 4 4.2095E-29 81.683 By MS/MS By MS/MS 6 1 0.52286 0.62555 18.748 7 Median NaN NaN NaN 0 0 Median 0.52222 0.57555 18.8 6 1 Median 0.62106 0.72686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68939000 47052000 21887000 0 0 0 65023000 44699000 20324000 3915700 2352600 1563100 0 0 0 0 0 0 0 0 0 4265 2632 4442 21977;21978;21979;21980;21981;21982;21983 22550;22551;22552;22553;22554;22555 22553 6 DGNITGIQQFSK KLGLDKAVLQSMSGRDGNITGIQQFSKKEI SGRDGNITGIQQFSKKEIEDLLRKGAYAAI R D G S K K 0 0 1 1 0 2 0 2 0 2 0 1 0 1 0 1 1 0 0 0 0 0 12 0 1306.6517 Q9HCK8;A0A2R8Y840;H0YJG4;A0A2R8YFI9 Q9HCK8 1289 1300 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 0.021881 50.353 By MS/MS 1 0.28697 0.3163 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28697 0.3163 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16869000 14017000 2852000 0 0 0 0 0 0 16869000 14017000 2852000 0 0 0 0 0 0 0 0 0 4266 4030 4443 21984 22556 22556 1 DGNVLLHEMQIQHPTASLIAK MKMLVSGAGDIKLTKDGNVLLHEMQIQHPT HEMQIQHPTASLIAKVATAQDDITGDGTTS K D G A K V 2 0 1 1 0 2 1 1 2 2 3 1 1 0 1 1 1 0 0 1 0 0 21 0 2314.2104 P40227 P40227 59 79 CCT6A T-complex protein 1 subunit zeta yes yes 3;4 2.333E-18 84.425 By MS/MS By matching By MS/MS 3 2 1 1.2012 1.0807 32.682 6 Median 1.1138 1.0335 44.515 3 2 Median 1.1352 0.98292 19.733 2 0 Median 1.3086 1.2694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100030000 46785000 53242000 81119000 37849000 43269000 3008600 1503800 1504800 15901000 7432300 8468400 0 0 0 0 0 0 0 0 0 4267 2285 4444;4445 21985;21986;21987;21988;21989;21990 22557;22558;22559;22560 22559 1040 4 DGPGFYTTR VAVGLKQGKVIIVVKDGPGFYTTRCLAPMM VIIVVKDGPGFYTTRCLAPMMSEVIRILQE K D G T R C 0 1 0 1 0 0 0 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 9 0 1012.4614 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 541 549 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.011539 47.198 By matching By MS/MS By MS/MS 1 2 1 1.2322 1.1702 28.393 4 Median 0.92413 0.88144 NaN 1 0 Median 1.7012 1.4719 23.582 2 0 Median 1.056 1.0993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17359000 7714200 9644800 5790800 3130800 2660000 5860800 2115400 3745400 5707400 2468000 3239300 0 0 0 0 0 0 0 0 0 4268 1180 4446 21991;21992;21993;21994 22561;22562 22561 2 DGPLLAALK DLPVEGGKGGEFAWRDGPLLAALKAGHWVV GEFAWRDGPLLAALKAGHWVVLDELNLASQ R D G L K A 2 0 0 1 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 9 0 896.53312 Q9NU22 Q9NU22 1807 1815 MDN1 Midasin yes yes 2 0.006571 54.157 By matching By MS/MS By matching 1 1 1 1.0798 0.99675 5.6543 3 Median NaN NaN NaN 0 0 Median 1.1667 1.0294 NaN 1 0 Median 0.8593 0.92221 NaN 1 0 Median 1.0798 0.99675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7653900 4204200 3449700 0 0 0 745800 339000 406800 6679900 3751700 2928200 228230 113480 114740 0 0 0 0 0 0 4269 4112 4447 21995;21996;21997 22563;22564 22564 2 DGPLNMILDDGGDLTNLIHTK DEEYLWCIEQTLYFKDGPLNMILDDGGDLT ILDDGGDLTNLIHTKYPQLLPGIRGISEET K D G T K Y 0 0 2 4 0 0 0 3 1 2 4 1 1 0 1 0 2 0 0 0 0 0 21 0 2251.1154 P23526 P23526 122 142 AHCY Adenosylhomocysteinase yes yes 2;3 4.0146E-17 100.54 By MS/MS By MS/MS By matching 4 1 1 1.1166 0.98181 5.4334 6 Median NaN NaN NaN 0 0 Median 1.1498 0.98328 6.8424 4 0 Median 0.99463 0.98135 NaN 1 0 Median 1.0879 0.95473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62688000 28697000 33991000 0 0 0 57985000 26519000 31466000 4607300 2135800 2471500 95741 42118 53623 0 0 0 0 0 0 4270 2116 4448 21998;21999;22000;22001;22002;22003 22565;22566;22567;22568;22569;22570;22571;22572;22573;22574;22575;22576 22575 12 DGPSLLVVEQVR SGQLPDPTTNPSAGKDGPSLLVVEQVRVVD AGKDGPSLLVVEQVRVVDLEGSLKVVYPSK K D G V R V 0 1 0 1 0 1 1 1 0 0 2 0 0 0 1 1 0 0 0 3 0 0 12 0 1310.7194 Q8N1G4 Q8N1G4 543 554 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.00067049 62.303 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.99804 0.8785 13.386 4 Median 0.93921 0.88893 NaN 1 0 Median 0.95882 0.82946 NaN 1 0 Median 1.0833 1.1194 NaN 1 0 Median 1.0389 0.86819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35641000 17331000 18310000 17113000 9276600 7836200 10921000 5230200 5690600 6398100 2216900 4181200 1209500 607040 602470 0 0 0 0 0 0 4271 3359 4449 22004;22005;22006;22007 22577;22578;22579;22580 22577 4 DGPVGFADFVYK CFIILSKLVELWGGKDGPVGFADFVYKHIV GGKDGPVGFADFVYKHIVPACFLAPLKQTF K D G Y K H 1 0 0 2 0 0 0 2 0 0 0 1 0 2 1 0 0 0 1 2 0 0 12 0 1313.6292 O43592 O43592 860 871 XPOT Exportin-T yes yes 2 0.012077 36.334 By MS/MS By matching 1 2 0.93042 0.89321 3.0746 3 Median 0.8953 0.89321 NaN 1 0 Median 0.96191 0.87241 3.8995 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2966600 1424900 1541700 2027300 995510 1031800 939270 429370 509900 0 0 0 0 0 0 0 0 0 0 0 0 4272 1576 4450 22008;22009;22010 22581 22581 1 DGQAMLWDLNEGK VTVSPDGSLCASGGKDGQAMLWDLNEGKHL GKDGQAMLWDLNEGKHLYTLDGGDIINALC K D G G K H 1 0 1 2 0 1 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 13 0 1475.6715 P63244;J3KPE3;D6RAC2;D6REE5;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;H0Y8R5 P63244 213 225 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 1.6984E-06 131.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.1615 1.0376 7.6131 8 Median 1.1664 1.0798 NaN 1 0 Median 1.1859 1.0049 4.8141 2 0 Median 1.0731 1.0331 2.4266 2 1 Median 1.2478 1.0507 2.0782 2 0 Median NaN NaN NaN 0 0 Median 1.041 0.85289 NaN 1 0 Median 65250000 29957000 35293000 10508000 4685200 5822800 14414000 6512000 7902300 32717000 15530000 17187000 7407300 3177800 4229500 0 0 0 203710 52299 151410 4273 2624 4451;4452 22011;22012;22013;22014;22015;22016;22017;22018 22582;22583;22584;22585;22586;22587;22588;22589 22585 1287 8 DGQILPVPNVVVR ELVPRRVAIFIEKTKDGQILPVPNVVVRDV TKDGQILPVPNVVVRDVACGANHTLVLDSQ K D G V R D 0 1 1 1 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 4 0 0 13 0 1404.8089 Q9P258 Q9P258 321 333 RCC2 Protein RCC2 yes yes 2 2.9758E-05 92.538 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 6 8 2 2 0.74649 0.7132 24.076 22 Median 0.69667 0.68228 7.6627 2 0 Median 0.7977 0.69245 2.7802 2 0 Median 0.72425 0.72869 15.764 6 0 Median 0.89107 0.76458 29.453 8 0 Median 0.53555 0.53266 0.37102 2 0 Median 0.57401 0.48593 27.181 2 0 Median 154870000 85145000 69723000 9314800 5298500 4016300 6298200 3631400 2666800 113740000 62483000 51257000 21679000 11184000 10495000 2988500 2022800 965710 848110 525450 322660 4274 4214 4453 22019;22020;22021;22022;22023;22024;22025;22026;22027;22028;22029;22030;22031;22032;22033;22034;22035;22036;22037;22038;22039;22040 22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600;22601;22602;22603;22604;22605;22606;22607;22608;22609;22610 22594 21 DGQILVYCLNR ALFATEDSHLSTVRRDGQILVYCLNRMSMK TVRRDGQILVYCLNRMSMKTSSWTRSQPFT R D G N R M 0 1 1 1 1 1 0 1 0 1 2 0 0 0 0 0 0 0 1 1 0 0 11 0 1349.6762 Q9NU22 Q9NU22 2457 2467 MDN1 Midasin yes yes 2 0.00013666 85.676 By MS/MS 1 1.185 1.2708 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.185 1.2708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5469400 2641800 2827500 0 0 0 0 0 0 5469400 2641800 2827500 0 0 0 0 0 0 0 0 0 4275 4112 4454 22041 22611 22611 1 DGQLIATGSADASIK VTSHKGPCRVATYSRDGQLIATGSADASIK DGQLIATGSADASIKILDTERMLAKSAMPI R D G I K I 3 0 0 2 0 1 0 2 0 2 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1445.7362 Q05048;A0A0A0MSZ9;A3KFI9 Q05048 119 133 CSTF1 Cleavage stimulation factor subunit 1 yes no 2 1.4874E-09 117.92 By MS/MS By matching 2 1 0.92821 0.88827 104.34 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80004 0.77555 19.192 2 1 Median NaN NaN NaN 0 0 Median 3.6643 4.654 NaN 1 0 Median NaN NaN NaN 0 0 Median 51052000 25001000 26051000 0 0 0 0 0 0 47603000 24353000 23251000 0 0 0 3449000 648110 2800900 0 0 0 4276 2716 4455 22042;22043;22044 22612;22613;22614;22615;22616;22617 22613 6 DGQPLAGLIQDHMVSGASMTTR AYVLACTDQQYLVPKDGQPLAGLIQDHMVS LIQDHMVSGASMTTRGCFFTREHYMELVYR K D G T R G 2 1 0 2 0 2 0 3 1 1 2 0 2 0 1 2 2 0 0 1 0 0 22 0 2284.094 O95602;B9ZVN9 O95602 623 644 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 2.8742E-07 46.982 By MS/MS 1 0.7768 0.85138 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7768 0.85138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7610100 3830100 3780000 0 0 0 0 0 0 7610100 3830100 3780000 0 0 0 0 0 0 0 0 0 4277 1781 4456 22045 22618 22618 1 DGQVINETSQHHDDLE THSKRTLLIKTVETRDGQVINETSQHHDDL GQVINETSQHHDDLE_______________ R D G L E - 0 0 1 3 0 2 2 1 2 1 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1835.7922 P08670 P08670 451 466 VIM Vimentin yes yes 2;3 4.0275E-20 138.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 6 6 6 5 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 660100000 0 0 79575000 0 0 87107000 0 0 66695000 0 0 91696000 0 0 279950000 0 0 55074000 0 0 4278 1907 4457 22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056;22057;22058;22059;22060;22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071;22072;22073;22074 22619;22620;22621;22622;22623;22624;22625;22626;22627;22628;22629;22630;22631;22632;22633;22634;22635;22636;22637;22638;22639;22640;22641;22642;22643;22644;22645;22646;22647;22648 22631 30 DGQWFTDWDAVPHSR LKWMPGITQWKVMTKDGQWFTDWDAVPHSR DGQWFTDWDAVPHSRHTQIRPTMFPPKDPE K D G S R H 1 1 0 3 0 1 0 1 1 0 0 0 0 1 1 1 1 2 0 1 0 0 15 0 1815.7965 Q08J23 Q08J23 370 384 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2;3 0.0012924 41.052 By MS/MS By matching By matching 3 1 1 0.93852 0.93019 20.326 5 Median 0.93852 0.93019 12.42 3 0 Median 1.4372 1.3096 NaN 1 0 Median 0.73887 0.78053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530900 2198300 2332600 3284700 1565900 1718800 714410 278710 435710 531730 353650 178080 0 0 0 0 0 0 0 0 0 4279 2745 4458 22075;22076;22077;22078;22079 22649;22650 22650 2 DGQWVSDALPAAEGGSR TMDEIDLESILGETKDGQWVSDALPAAEGG QWVSDALPAAEGGSRDQEEGKNHMYLFEGK K D G S R D 3 1 0 2 0 1 1 3 0 0 1 0 0 0 1 2 0 1 0 1 0 0 17 0 1714.7911 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C179 Q86WJ1 547 563 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 4.0095E-07 90.731 By MS/MS By matching By matching 1 1 1 1.1152 0.96477 20.875 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79916 0.85192 NaN 1 0 Median 1.1152 0.96477 NaN 1 0 Median 1.1448 1.2803 NaN 1 0 Median NaN NaN NaN 0 0 Median 8012800 4179000 3833700 0 0 0 0 0 0 5883400 3055100 2828200 411720 200800 210920 1717700 923100 794570 0 0 0 4280 3293 4459 22080;22081;22082 22651;22652 22651 2 DGSAFEDGLR SQGHLTRAICCRVTRDGSAFEDGLRHPFIV CRVTRDGSAFEDGLRHPFIVNHPKVGRVSI R D G L R H 1 1 0 2 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1065.4727 P55265;A0A3B3IRQ9 P55265 1087 1096 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0026987 59.35 By MS/MS 2 1.203 1.2516 24.137 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.203 1.2516 24.137 2 0 Median NaN NaN NaN 0 0 Median 10438000 4951800 5485700 0 0 0 0 0 0 0 0 0 0 0 0 10438000 4951800 5485700 0 0 0 4281 2498 4460 22083;22084 22653;22654 22654 2 DGSDVIYPAR IVFVLKDKPHNIFKRDGSDVIYPARISLRE NIFKRDGSDVIYPARISLREALCGCTVNVP R D G A R I 1 1 0 2 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 1 0 0 10 0 1091.5247 P25685;M0R080 P25685 250 259 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 4.8333E-05 127.02 By MS/MS 1 5.0698 4.2189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.0698 4.2189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18387000 2249700 16137000 0 0 0 0 0 0 0 0 0 18387000 2249700 16137000 0 0 0 0 0 0 4282 2134 4461 22085 22655 22655 1 DGSVAIASKPR GTLVQEGGSPIKYNKDGSVAIASKPREVRE KYNKDGSVAIASKPREVREFNGQHFILEEA K D G P R E 2 1 0 1 0 0 0 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 11 1 1099.5986 P55809 P55809 177 187 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 2 0.042944 39.305 By matching By MS/MS 1 1 1.0054 0.97203 34.044 2 Median 0.74663 0.76407 NaN 1 0 Median 1.3538 1.2366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1312500 604810 707640 347420 204310 143110 965030 400500 564530 0 0 0 0 0 0 0 0 0 0 0 0 4283 2503 4462 22086;22087 22656 22656 1 DGSVLVPPALQSYLGTDR VPRLLIALLESNQQKDGSVLVPPALQSYLG VLVPPALQSYLGTDRITAPTHVPLQYIGPN K D G D R I 1 1 0 2 0 1 0 2 0 0 3 0 0 0 2 2 1 0 1 2 0 0 18 0 1886.9738 M0QWZ7;M0R2C6;Q9NP81;M0R259;M0QX29 M0QWZ7 472 489 SARS2 Serine--tRNA ligase, mitochondrial yes no 3 0.056177 9.1638 By MS/MS By matching By matching By matching 3 1 2 2 1.0372 1.0374 21.504 8 Median 1.1144 1.0681 0.46995 3 0 Plateau 0.91659 0.79408 NaN 1 0 Median 1.062 1.0965 10.797 2 0 Median 0.83764 0.71774 20.915 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 772060000 365300000 406760000 459830000 211170000 248660000 261450000 128880000 132570000 13674000 6790300 6884100 37107000 18462000 18644000 0 0 0 0 0 0 4284 1407 4463 22088;22089;22090;22091;22092;22093;22094;22095 22657 22657 1 DGTGVVEFVR HMREAGDVCYADVYRDGTGVVEFVRKEDMT ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK R D G V R K 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 3 0 0 10 0 1077.5455 J3KTL2;Q07955;J3KSR8 J3KTL2 155 164 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00042214 118.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 6 6 1.2809 1.0993 37.811 18 Median 1.1606 1.085 NaN 1 0 Median 1.3658 1.1451 13.534 2 0 Median 1.0615 1.0237 4.6757 2 1 Median 1.3331 1.1125 NaN 1 0 Median 1.1035 1.1092 61.879 6 1 Median 1.3763 1.1189 15.565 6 0 Median 549400000 234650000 314750000 32854000 12651000 20202000 45382000 14052000 31329000 91426000 42628000 48798000 27658000 11602000 16055000 316930000 139560000 177360000 35160000 14152000 21007000 4285 1337 4464 22096;22097;22098;22099;22100;22101;22102;22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113;22114 22658;22659;22660;22661;22662;22663;22664;22665;22666;22667;22668;22669;22670;22671;22672;22673;22674;22675;22676;22677;22678;22679;22680 22659 23 DGTGVVEFVRK HMREAGDVCYADVYRDGTGVVEFVRKEDMT DVYRDGTGVVEFVRKEDMTYAVRKLDNTKF R D G R K E 0 1 0 1 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 11 1 1205.6404 J3KTL2;Q07955;J3KSR8 J3KTL2 155 165 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2;3 0.00016163 128.36 By matching By MS/MS 1 3 1.0559 1.1355 13.734 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1916 1.3517 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.091 1.1876 9.7758 3 0 Plateau NaN NaN NaN 0 0 Median 34656000 16371000 18285000 0 0 0 0 0 0 2413900 1181100 1232800 0 0 0 32242000 15190000 17052000 0 0 0 4286 1337 4465 22115;22116;22117;22118 22681;22682;22683;22684;22685 22684 5 DGTIDFTPGSELLITK NINQGSITFAGGPGRDGTIDFTPGSELLIT GTIDFTPGSELLITKAKNGHLAVVAPRLNS R D G T K A 0 0 0 2 0 0 1 2 0 2 2 1 0 1 1 1 3 0 0 0 0 0 16 0 1705.8774 F5H6E2;O00159 F5H6E2 1008 1023 MYO1C Unconventional myosin-Ic yes no 2 0.0076063 29.936 By MS/MS By matching By matching 1 1 1 0.91646 0.88037 15.019 3 Median 0.89325 0.88037 NaN 1 0 Median 0.91646 0.79191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0377 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 7637400 3820400 3817000 3586900 1814000 1772900 3544700 1720800 1823900 0 0 0 0 0 0 505840 285590 220250 0 0 0 4287 1042 4466 22119;22120;22121 22686 22686 1 DGTYAVTYIPDK DQEGKPKRAIVHDNKDGTYAVTYIPDKTGR DNKDGTYAVTYIPDKTGRYMIGVTYGGDDI K D G D K T 1 0 0 2 0 0 0 1 0 1 0 1 0 0 1 0 2 0 2 1 0 0 12 0 1341.6452 O75369;E7EN95 O75369 1573 1584 FLNB Filamin-B yes no 2 0.00085134 60.102 By MS/MS By matching 2 1 1.1626 1.0326 2.6299 3 Median NaN NaN NaN 0 0 Median 1.1642 1.0231 1.3153 2 0 Median NaN NaN NaN 0 0 Median 1.1626 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8046300 3979600 4066700 0 0 0 7668000 3822900 3845200 0 0 0 378290 156770 221520 0 0 0 0 0 0 4288 1664 4467 22122;22123;22124 22687;22688 22688 2 DGVGAVMDSMELER YYTGRIAKMHEVKGKDGVGAVMDSMELERQ KDGVGAVMDSMELERQRGITIQSAATYTMW K D G E R Q 1 1 0 2 0 0 2 2 0 0 1 0 2 0 0 1 0 0 0 2 0 0 14 0 1507.6647 Q96RP9;F8WAU4;C9IZ01;C9JA25 Q96RP9 83 96 GFM1 Elongation factor G, mitochondrial yes no 2 0.0012798 49.5 By matching By MS/MS 1 1 0.85888 0.81413 14.991 2 Median 0.91256 0.90517 NaN 1 0 Median 0.80836 0.73225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2356700 1177200 1179500 1450300 715680 734590 906420 461480 444930 0 0 0 0 0 0 0 0 0 0 0 0 4289 3728 4468 22125;22126 22689 22689 1 DGVGMVEYLR HMREAGDVCYADVQKDGVGMVEYLRKEDME ADVQKDGVGMVEYLRKEDMEYALRKLDDTK K D G L R K 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 1 2 0 0 10 0 1137.5488 Q13242;H0YIB4 Q13242 145 154 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.0010092 88.948 By MS/MS By MS/MS 2 1 1.089 1.053 8.5249 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.027 0.98653 9.2211 2 2 Median NaN NaN NaN 0 0 Median 1.089 1.085 NaN 1 0 Median NaN NaN NaN 0 0 Median 39864000 19583000 20281000 0 0 0 0 0 0 34754000 17199000 17555000 0 0 0 5109500 2383900 2725600 0 0 0 4290 2799 4469 22127;22128;22129 22690;22691;22692 22690 3 DGVIEASINHEK DSPEDAEFIVAKAIRDGVIEASINHEKGYV AIRDGVIEASINHEKGYVQSKEMIDIYSTR R D G E K G 1 0 1 1 0 0 2 1 1 2 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1310.6466 O43242 O43242 444 455 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2;3 7.6405E-06 134.68 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.007 0.86039 33.174 8 Median 0.65627 0.62479 48.381 3 0 Median 1.0675 0.89128 4.076 3 2 Plateau 1.1518 1.2688 NaN 1 0 Median 0.70523 0.61143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66772000 33850000 32923000 21193000 11887000 9306000 40738000 19576000 21161000 4016100 1857700 2158400 825690 528870 296820 0 0 0 0 0 0 4291 1560 4470 22130;22131;22132;22133;22134;22135;22136;22137 22693;22694;22695;22696;22697;22698;22699 22698 7 DGVLEEQIER HKRRSDDDDRSSDRKDGVLEEQIERLQEKV SSDRKDGVLEEQIERLQEKVESAQSEQKNL K D G E R L 0 1 0 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1186.583 Q09161;X6R941 Q09161 685 694 NCBP1 Nuclear cap-binding protein subunit 1 yes no 2 0.016038 55.064 By MS/MS 1 0.98242 1.0182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98242 1.0182 NaN 1 1 Median NaN NaN NaN 0 0 Median 6269200 3004600 3264600 0 0 0 0 0 0 0 0 0 0 0 0 6269200 3004600 3264600 0 0 0 4292 2747 4471 22138 22700 22700 1 DGVLTLANNVTPAK EDQVPALKTEAPLAKDGVLTLANNVTPAKD KDGVLTLANNVTPAKDVPPLSETEATPVPI K D G A K D 2 0 2 1 0 0 0 1 0 0 2 1 0 0 1 0 2 0 0 2 0 0 14 0 1411.7671 E7EVA0;P27816 E7EVA0 578 591 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 1.3946E-05 87.363 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 3 3 4 1 1 0.96975 0.89189 25.309 15 Median 1.0218 0.97378 36.665 3 1 Plateau 0.97522 0.85133 11.242 3 0 Plateau 0.98165 1.0426 25.74 3 0 Median 1.0004 0.86215 7.6258 4 0 Median 0.91838 0.96836 NaN 1 0 Median 1.4658 1.3683 NaN 1 0 Median 51557000 24057000 27500000 7983100 3797300 4185800 4024500 2079000 1945500 27789000 12234000 15555000 10078000 5042900 5035400 1531200 870120 661100 151400 34520 116880 4293 895 4472 22139;22140;22141;22142;22143;22144;22145;22146;22147;22148;22149;22150;22151;22152;22153 22701;22702;22703;22704;22705;22706;22707;22708;22709;22710 22702 10 DGVNKDYEETELISTTANYR RELAEKYRDRAKERRDGVNKDYEETELIST DYEETELISTTANYRAVGPTAEADKSAAEK R D G Y R A 1 1 2 2 0 0 3 1 0 1 1 1 0 0 0 1 3 0 2 1 0 0 20 1 2317.071 Q13123;E7EQZ7;D6REL4;D6RAY9 Q13123 108 127 IK Protein Red yes no 3 4.9949E-11 95.094 By matching By matching By MS/MS 1 2 2 1.1566 1.2287 14.959 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1566 1.2287 NaN 1 0 Median 1.1713 1.0994 23.195 2 0 Median 1.0727 1.1456 16.567 2 0 Median NaN NaN NaN 0 0 Median 11397000 6003500 5394000 0 0 0 0 0 0 2513300 1080400 1432900 960020 481360 478670 7924100 4441700 3482400 0 0 0 4294 2787 4473 22154;22155;22156;22157;22158 22711;22712 22711 2 DGVPEGAQLQGPVHR PHPNRIQAGEIGEMKDGVPEGAQLQGPVHR DGVPEGAQLQGPVHRNPTYRPRYRSRGPPR K D G H R N 1 1 0 1 0 2 1 3 1 0 1 0 0 0 2 0 0 0 0 2 0 0 15 0 1558.7852 P16989 P16989 269 283 YBX3 Y-box-binding protein 3 yes yes 3 0.0056013 39.005 By MS/MS By MS/MS 1 1 0.70003 0.5982 1.4686 2 Median NaN NaN NaN 0 0 Median 0.71045 0.60444 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.68977 0.59202 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6650200 4441500 2208700 0 0 0 4035200 2705900 1329300 0 0 0 2614900 1735500 879400 0 0 0 0 0 0 4295 2033 4474 22159;22160 22713;22714 22713 2 DGVPIGYK TAENFRQFCTGEFRKDGVPIGYKGSTFHRV CTGEFRKDGVPIGYKGSTFHRVIKDFMIQG K D G Y K G 0 0 0 1 0 0 0 2 0 1 0 1 0 0 1 0 0 0 1 1 0 0 8 0 847.44397 C9JQD4;O43447;C9JAN8 C9JQD4 28 35 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 2 0.053471 34.003 By matching By MS/MS 1 1 0.74915 0.67716 22.529 2 Median NaN NaN NaN 0 0 Median 0.91783 0.7941 NaN 1 0 Median 0.61147 0.57743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6963100 3285900 3677200 0 0 0 1799400 903560 895830 5163700 2382300 2781300 0 0 0 0 0 0 0 0 0 4296 717 4475 22161;22162 22715;22716 22715 2 DGVSLGAVSSTEEASR QESHVHYSRWEDGSRDGVSLGAVSSTEEAS GVSLGAVSSTEEASRCRR____________ R D G S R C 2 1 0 1 0 0 2 2 0 0 1 0 0 0 0 4 1 0 0 2 0 0 16 0 1563.7376 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 19 34 SMIM1 Small integral membrane protein 1 yes no 2 0.0057351 32.498 By MS/MS 1 1.3737 1.1637 NaN 1 Median NaN NaN NaN 0 0 Median 1.3737 1.1637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2815400 920840 1894600 0 0 0 2815400 920840 1894600 0 0 0 0 0 0 0 0 0 0 0 0 4297 381 4476 22163 22717 22717 1 DGVTMAPAFR AMDSEDFPQAAKQIKDGVTMAPAFRLSLKA AKQIKDGVTMAPAFRLSLKAKVSDNMSHLM K D G F R L 2 1 0 1 0 0 0 1 0 0 0 0 1 1 1 0 1 0 0 1 0 0 10 0 1063.5121 M0R366;Q9BTV5;M0R2F6 M0R366 122 131 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 2 0.002396 75.213 By MS/MS 1 0.71888 0.74657 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71888 0.74657 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3995100 2426900 1568200 0 0 0 0 0 0 3995100 2426900 1568200 0 0 0 0 0 0 0 0 0 4298 1438 4477 22164 22718 22718 1 DGVTVAVISGEALGIK QYQELKSEEIPKPSKDGVTVAVISGEALGI GVTVAVISGEALGIKSKVYTRTPTLYLDFK K D G I K S 2 0 0 1 0 0 1 3 0 2 1 1 0 0 0 1 1 0 0 3 0 0 16 0 1527.8508 O00625 O00625 145 160 PIR Pirin yes yes 2 0.0012542 38.634 By MS/MS 1 1.3542 1.1476 NaN 1 Median NaN NaN NaN 0 0 Median 1.3542 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1123100 504090 619010 0 0 0 1123100 504090 619010 0 0 0 0 0 0 0 0 0 0 0 0 4299 1474 4478 22165 22719 22719 1 DGVVEITGKHEER DVNHFAPDELTVKTKDGVVEITGKHEERQD TKDGVVEITGKHEERQDEHGYISRCFTRKY K D G E R Q 0 1 0 1 0 0 3 2 1 1 0 1 0 0 0 0 1 0 0 2 0 0 13 1 1467.7318 P04792 P04792 115 127 HSPB1 Heat shock protein beta-1 yes yes 3 0.0001616 71.879 By MS/MS By MS/MS 2 1 1.297 1.2071 49.62 3 Median 1.3143 1.3227 69.774 2 0 Median 1.297 1.2071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5558100 2496200 3061900 2115700 991700 1124000 3442400 1504500 1938000 0 0 0 0 0 0 0 0 0 0 0 0 4300 1851 4479 22166;22167;22168 22720;22721 22721 2 DGVVEITGKHEERQDEHGYISR DVNHFAPDELTVKTKDGVVEITGKHEERQD GKHEERQDEHGYISRCFTRKYTLPPGVDPT K D G S R C 0 2 0 2 0 1 4 3 2 2 0 1 0 0 0 1 1 0 1 2 0 0 22 2 2553.2208 P04792 P04792 115 136 HSPB1 Heat shock protein beta-1 yes yes 4;5 4.8286E-07 45.047 By MS/MS By MS/MS 2 2 1.0881 1.0489 13.525 4 Median 0.95864 0.96183 8.5298 2 0 Median 1.2552 1.1625 10.822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23463000 11884000 11579000 8704400 5062500 3641900 14758000 6821600 7936800 0 0 0 0 0 0 0 0 0 0 0 0 4301 1851 4480 22169;22170;22171;22172 22722;22723;22724;22725 22723 4 DGVVFGVEK KAVENSSTAIGIRCKDGVVFGVEKLVLSKL IGIRCKDGVVFGVEKLVLSKLYEEGSNKRL K D G E K L 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 3 0 0 9 0 948.49165 P25788 P25788 44 52 PSMA3 Proteasome subunit alpha type-3 yes yes 2 0.038148 34.186 By MS/MS By matching 1 1 1.0168 0.88553 31.818 2 Median NaN NaN NaN 0 0 Median 1.3078 1.109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79058 0.70712 NaN 1 0 Median NaN NaN NaN 0 0 Median 2905600 1223900 1681700 0 0 0 2057800 897840 1160000 0 0 0 0 0 0 847770 326080 521690 0 0 0 4302 2137 4481 22173;22174 22726 22726 1 DGVVRPLK ADWREVWALVQAGIRDGVVRPLKCTVFHGA LVQAGIRDGVVRPLKCTVFHGAQVEDAFRY R D G L K C 0 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 1 882.5287 P49327;A0A0U1RQF0 P49327 1820 1827 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.035906 66.429 By matching By MS/MS 1 3 1.2307 1.1647 14.455 4 Median 0.92912 0.95178 NaN 1 0 Median 1.2693 1.2035 8.9148 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7550200 3359400 4190800 527440 264640 262790 7022800 3094700 3928000 0 0 0 0 0 0 0 0 0 0 0 0 4303 2377 4482 22175;22176;22177;22178 22727;22728 22728 2 DGVWKPTLVILR VTCGADRNAYVWSQKDGVWKPTLVILRINR SQKDGVWKPTLVILRINRAATFVKWSPLEN K D G L R I 0 1 0 1 0 0 0 1 0 1 2 1 0 0 1 0 1 1 0 2 0 0 12 1 1395.8238 A0A1W2PNV4;E9PF58;Q92747 Q92747 83 94 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 2;3 0.018052 45.161 By MS/MS By matching By MS/MS By matching 2 2 1 2 1.0458 1.0556 10.271 7 Median 0.99624 1.0203 13.22 2 0 Median 1.0319 0.97311 11.505 2 0 Median 1.0368 1.1762 NaN 1 0 Median 1.2457 1.0884 6.3222 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32426000 14789000 17637000 4888000 2146600 2741500 19954000 9215500 10739000 2497800 1137700 1360100 5085600 2288900 2796800 0 0 0 0 0 0 4304 334;3552 4483 22179;22180;22181;22182;22183;22184;22185 22729;22730;22731 22729 3 DGVWNLQNEVTK ILPKCRTSYEEFTHKDGVWNLQNEVTKERT THKDGVWNLQNEVTKERTAQCFLRVDDESM K D G T K E 0 0 2 1 0 1 1 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 12 0 1401.6888 Q6P2Q9 Q6P2Q9 1211 1222 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 3.5133E-06 111.27 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 1.3082 1.178 6.5728 8 Median 1.2682 1.218 NaN 1 0 Median 1.3395 1.1777 4.0857 2 0 Median 0.94886 1.0451 NaN 1 0 Median 1.3077 1.1839 NaN 1 0 Median 1.1197 1.1721 NaN 1 0 Median 1.4651 1.2183 10.418 2 0 Median 43378000 19778000 23600000 5047300 2145300 2902000 4444100 1859700 2584300 20814000 10099000 10714000 2033000 849280 1183700 10597000 4622100 5975000 442650 201700 240950 4305 3157 4484 22186;22187;22188;22189;22190;22191;22192;22193 22732;22733;22734;22735;22736;22737 22735 6 DGVYVLDLAAK LYFTYLEINPLVVTKDGVYVLDLAAKVDAT VVTKDGVYVLDLAAKVDATADYICKVKWGD K D G A K V 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 2 0 0 11 0 1162.6234 P53396 P53396 210 220 ACLY ATP-citrate synthase yes yes 2 0.00081974 62.463 By MS/MS By MS/MS 1 2 1.4177 1.3685 13.569 3 Median 1.4177 1.3685 NaN 1 0 Median 1.4112 1.2233 16.864 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30112000 12948000 17164000 16646000 6969300 9676800 13466000 5979100 7486900 0 0 0 0 0 0 0 0 0 0 0 0 4306 2467 4485 22194;22195;22196 22738;22739;22740 22739 3 DGWGGYGSDKR PERHGGPERHGRDSRDGWGGYGSDKRMSEG RDSRDGWGGYGSDKRMSEGRGLPPPPRRDW R D G K R M 0 1 0 2 0 0 0 4 0 0 0 1 0 0 0 1 0 1 1 0 0 0 11 1 1196.521 Q15424;Q14151 Q15424 796 806 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3 0.061935 22.046 By MS/MS 1 1.5063 1.4476 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5063 1.4476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 496380 122850 373520 0 0 0 0 0 0 0 0 0 496380 122850 373520 0 0 0 0 0 0 4307 2951;2859 4486 22197 22741 22741 1 DGWPAMGIHGDK ETKRRCDELTRKMRRDGWPAMGIHGDKSQQ MRRDGWPAMGIHGDKSQQERDWVLNEFKHG R D G D K S 1 0 0 2 0 0 0 3 1 1 0 1 1 0 1 0 0 1 0 0 0 0 12 0 1282.5765 J3KTA4;P17844 J3KTA4 364 375 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 0.0044584 43.512 By MS/MS 2 1.121 1.1701 0.42201 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.121 1.1701 0.42201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12006000 5548000 6458500 0 0 0 0 0 0 12006000 5548000 6458500 0 0 0 0 0 0 0 0 0 4308 1334 4487 22198;22199 22742;22743;22744;22745 22745 4 DGWQVEEADDWLR YGIRYEYGIFNQKIRDGWQVEEADDWLRYG IRDGWQVEEADDWLRYGNPWEKSRPEFMLP R D G L R Y 1 1 0 3 0 1 2 1 0 0 1 0 0 0 0 0 0 2 0 1 0 0 13 0 1617.7059 P06737;E9PK47 P06737 173 185 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.00054206 71.016 By MS/MS 1 1.3596 1.1869 NaN 1 Median NaN NaN NaN 0 0 Median 1.3596 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1803100 697760 1105300 0 0 0 1803100 697760 1105300 0 0 0 0 0 0 0 0 0 0 0 0 4309 1874 4488 22200 22746 22746 1 DGWSLWYSEYR TLSVALPYFWEHFDKDGWSLWYSEYRFPEE HFDKDGWSLWYSEYRFPEELTQTFMSCNLI K D G Y R F 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 2 2 0 0 0 11 0 1460.6361 P26641 P26641 317 327 EEF1G Elongation factor 1-gamma yes yes 2 0.00011486 131.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 3 1 1.2326 1.1484 19.84 11 Median 1.1796 1.1573 NaN 1 0 Median 1.1145 0.94851 14.093 3 0 Median 1.3558 1.3521 7.8277 3 0 Median 1.2326 1.0803 3.7454 3 0 Median 1.4216 1.4291 NaN 1 0 Median NaN NaN NaN 0 0 Median 31441000 13599000 17842000 884900 412000 472900 4218000 1997100 2220900 23779000 10067000 13712000 2466600 1084600 1382000 92417 37823 54594 0 0 0 4310 2149 4489 22201;22202;22203;22204;22205;22206;22207;22208;22209;22210;22211 22747;22748;22749;22750;22751;22752;22753;22754;22755;22756;22757 22749 11 DGYAQILR TITPGSEQIRATIERDGYAQILRDLGGIVL IRATIERDGYAQILRDLGGIVLANACGPCI R D G L R D 1 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 934.48723 A2A274;Q99798 A2A274 455 462 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.0034679 94.401 By MS/MS By MS/MS 1 1 1.3492 1.2201 30.861 2 Median 1.0367 0.9809 NaN 1 0 Median 1.7558 1.5176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21144000 8556600 12587000 10416000 5014000 5401500 10728000 3542600 7185700 0 0 0 0 0 0 0 0 0 0 0 0 4311 495 4490 22212;22213 22758;22759;22760 22758 3 DGYDYDGYR EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG R D G Y R L 0 1 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 3 0 0 0 9 0 1122.4254 J3KTL2;Q07955 J3KTL2 75 83 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00029074 138.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 3 2 1.1604 1.0303 7.4113 12 Median 1.1955 1.1302 NaN 1 0 Median 1.2633 1.0606 1.4918 2 0 Median 1.036 0.98941 2.4162 2 0 Median 1.1751 0.97372 5.386 2 0 Median 1.0496 1.0603 9.3661 3 0 Median 1.2266 1.0207 12.35 2 0 Median 75051000 35609000 39443000 5131400 2246500 2884900 9617900 4351100 5266800 19364000 9243300 10120000 13892000 6428800 7463600 24472000 12189000 12283000 2573700 1149700 1424000 4312 1337 4491 22214;22215;22216;22217;22218;22219;22220;22221;22222;22223;22224;22225 22761;22762;22763;22764;22765;22766;22767;22768;22769;22770;22771 22771 11 DGYGRDRDYSDHPSGGSYR SSSRDDYPSRGYSDRDGYGRDRDYSDHPSG RDRDYSDHPSGGSYRDSYESYGNSRSAPPT R D G Y R D 0 3 0 4 0 0 0 4 1 0 0 0 0 0 1 3 0 0 3 0 0 0 19 2 2158.9053 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 264 282 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 4 0.041256 12.303 By MS/MS By matching 1 1 0.85785 1.0129 15.983 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68661 0.90465 NaN 1 0 Median 1.0718 1.1341 NaN 1 0 Median 2430800 1251000 1179800 0 0 0 0 0 0 0 0 0 0 0 0 1806600 895920 910650 624230 355070 269160 4313 2273;3632 4492 22226;22227 22772 22772 1 DGYIHYGQTVK LLDDDESEGEEFTVRDGYIHYGQTVKLVCS FTVRDGYIHYGQTVKLVCSVTGMALPRLII R D G V K L 0 0 0 1 0 1 0 2 1 1 0 1 0 0 0 0 1 0 2 1 0 0 11 0 1279.6197 Q06330;D6R927 Q06330 239 249 RBPJ Recombining binding protein suppressor of hairless yes no 3 0.0049991 35.645 By MS/MS By MS/MS 1 1 1.6075 1.5109 1.9502 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4481 1.4902 NaN 1 1 Median 1.7846 1.5319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5168700 2330400 2838300 0 0 0 0 0 0 2535100 1303600 1231500 2633600 1026900 1606800 0 0 0 0 0 0 4314 2725 4493 22228;22229 22773;22774;22775 22774 3 DGYNYTLSK CIESLIAVFQKYAGKDGYNYTLSKTEFLSF QKYAGKDGYNYTLSKTEFLSFMNTELAAFT K D G S K T 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 2 0 0 0 9 0 1059.4873 P31949 P31949 28 36 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 2 0.0020234 75.043 By MS/MS By MS/MS By matching 1 2 1 1.3176 1.153 10.869 4 Median 1.0845 0.97461 NaN 1 0 Median 1.3996 1.153 0.86371 2 0 Median 1.2442 1.2646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115470000 51938000 63531000 82483000 38434000 44049000 32330000 13220000 19111000 655880 284400 371480 0 0 0 0 0 0 0 0 0 4315 2213 4494 22230;22231;22232;22233 22776;22777;22778;22779;22780 22780 5 DGYVLSLNR DIANDILQDINRDRKDGYVLSLNRVSDARE INRDRKDGYVLSLNRVSDAREHRQEAGLGS K D G N R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1035.5349 CON__Q58D62 CON__Q58D62 58 66 yes yes 2 0.022655 53.968 By MS/MS 1 0.02999 0.029226 NaN 1 Median 0.02999 0.029226 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6032600 5687700 344910 6032600 5687700 344910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4316 784 4495 22234 22781 22781 1 DHADSNIVIMLVGNK HLTYENVERWLKELRDHADSNIVIMLVGNK DHADSNIVIMLVGNKSDLRHLRAVPTDEAR R D H N K S 1 0 2 2 0 0 0 1 1 2 1 1 1 0 0 1 0 0 0 2 0 0 15 0 1624.8243 H3BSC1;P62491;H3BMH2;B4DQU5;Q15907 Q15907 111 125 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 3 0.00012213 49.482 By MS/MS By MS/MS 1 1 1.1345 1.0042 9.1691 2 Median 1.1478 1.0715 NaN 1 0 Median 1.1213 0.94117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19366000 8604200 10762000 12999000 5583200 7415600 6367500 3021000 3346500 0 0 0 0 0 0 0 0 0 0 0 0 4317 1233;2976 4496 22235;22236 22782;22783 22782 2 DHALLEEQSK INSKWEKVQQLVPKRDHALLEEQSKQQSNE LVPKRDHALLEEQSKQQSNEHLRRQFASQA R D H S K Q 1 0 0 1 0 1 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1168.5724 O43707;F5GXS2;H7C144 O43707 634 643 ACTN4 Alpha-actinin-4 yes no 2 1.076E-10 177.7 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.92743 0.86061 5.7837 5 Median 0.90939 0.92417 NaN 1 0 Median 0.94948 0.82106 6.2826 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82327 0.86061 NaN 1 0 Median 1.0325 0.86319 NaN 1 0 Median 14633000 7567200 7065800 671840 353320 318520 12175000 6374900 5800000 0 0 0 0 0 0 1430800 629210 801570 355420 209800 145620 4318 1585 4497 22237;22238;22239;22240;22241 22784;22785;22786;22787 22786 4 DHANEELDELKR IQSFGRSMSSLQNSRDHANEELDELKRKYD NSRDHANEELDELKRKYDASLKELAQLKEQ R D H K R K 1 1 1 2 0 0 3 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1467.6954 Q14789 Q14789 2748 2759 GOLGB1 Golgin subfamily B member 1 yes yes 3 5.4624E-10 171.49 By MS/MS By MS/MS 1 1 1.1615 1.1322 13.464 2 Median 1.2077 1.2453 NaN 1 0 Median 1.117 1.0293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29253000 13802000 15451000 5792600 3054800 2737800 23460000 10747000 12713000 0 0 0 0 0 0 0 0 0 0 0 0 4319 2900 4498 22242;22243 22788;22789;22790;22791 22791 4 DHASIQMNVAEVDK VPRKCSASNRIIGAKDHASIQMNVAEVDKV KDHASIQMNVAEVDKVTGRFNGQFKTYAIC K D H D K V 2 0 1 2 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 2 0 0 14 0 1555.7301 Q8WVC2;P63220;Q9BYK1 Q8WVC2 28 41 RPS21 40S ribosomal protein S21 yes no 3 0.013588 24.275 By matching By MS/MS By matching 1 2 1 1.0967 0.93042 7.9378 4 Median 1.0728 1.0076 NaN 1 0 Median 1.0557 0.8804 8.1991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1319 0.9279 NaN 1 0 Median 4542100 2434200 2107900 1089100 576520 512580 3260500 1763200 1497300 0 0 0 0 0 0 0 0 0 192520 94459 98066 4320 2623 4499 22244;22245;22246;22247 22792 22792 1 DHASIQMNVAEVDKVTGR VPRKCSASNRIIGAKDHASIQMNVAEVDKV SIQMNVAEVDKVTGRFNGQFKTYAICGAIR K D H G R F 2 1 1 2 0 1 1 1 1 1 0 1 1 0 0 1 1 0 0 3 0 0 18 1 1968.9687 Q8WVC2;P63220;Q9BYK1 Q8WVC2 28 45 RPS21 40S ribosomal protein S21 yes no 3;4 1.0289E-15 163.35 By MS/MS By MS/MS By MS/MS 3 3 3 1.0866 1.0423 26.229 9 Median 1.0866 1.0655 32.041 3 0 Median 0.88022 0.77715 18.591 3 0 Median 1.1842 1.2267 8.5897 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49765000 22884000 26881000 9198800 3410100 5788700 10826000 6180800 4645500 29740000 13293000 16447000 0 0 0 0 0 0 0 0 0 4321 2623 4500;4501 22248;22249;22250;22251;22252;22253;22254;22255;22256 22793;22794;22795;22796;22797;22798 22797 1284 5 DHAVFTR PGLEPGDIIIVLDQKDHAVFTRRGEDLFMC IIIVLDQKDHAVFTRRGEDLFMCMDIQLVE K D H T R R 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 844.41915 P31689 P31689 247 253 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.009327 84.244 By matching By MS/MS By MS/MS 1 1 1 1.0635 1.006 14.669 3 Median 1.0316 1.006 NaN 1 0 Median 1.0635 0.91572 NaN 1 0 Median 1.2325 1.221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3921900 1788300 2133600 496660 199990 296670 2258600 1077300 1181300 1166600 511030 655580 0 0 0 0 0 0 0 0 0 4322 2204 4502 22257;22258;22259 22799;22800;22801;22802 22802 4 DHAVVVGVYRPPPK NMKPQEQLTLEPYERDHAVVVGVYRPPPKV RDHAVVVGVYRPPPKVKN____________ R D H P K V 1 1 0 1 0 0 0 1 1 0 0 1 0 0 3 0 0 0 1 4 0 0 14 1 1532.8463 P22087 P22087 305 318 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3 3.1218E-09 168.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 3 6 6 0.83058 0.75101 29.191 22 Median 0.80899 0.86664 NaN 1 0 Median 0.93586 0.88094 7.7774 3 0 Median 0.68106 0.73701 23.108 5 1 Median 1.0881 0.99135 37.933 2 0 Median 0.61536 0.67594 47.995 6 2 Median 0.83079 0.73742 20.852 5 2 Median 501900000 287090000 214810000 4009400 2223800 1785500 23784000 12357000 11427000 177520000 103510000 74016000 26840000 14362000 12477000 202330000 118540000 83794000 67417000 36105000 31312000 4323 2097 4503 22260;22261;22262;22263;22264;22265;22266;22267;22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283 22803;22804;22805;22806;22807;22808;22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829;22830;22831;22832;22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845;22846;22847 22840 45 DHDTFLAVR RWTELAGCTADFRNRDHDTFLAVRYSRGRL ADFRNRDHDTFLAVRYSRGRLTVMTDLEDK R D H V R Y 1 1 0 2 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1072.5302 Q12907;D6RBV2;D6RIU4;D6RDX1 Q12907 210 218 LMAN2 Vesicular integral-membrane protein VIP36 yes no 2 0.00098548 86.953 By matching By MS/MS 1 2 1.3398 1.1158 50.422 3 Median 1.5924 1.5313 NaN 1 0 Median 0.88907 0.7978 47.441 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9987600 3891200 6096400 2817900 641170 2176800 7169600 3250000 3919600 0 0 0 0 0 0 0 0 0 0 0 0 4324 2770 4504 22284;22285;22286 22848;22849 22848 2 DHEAWETR DVEPVLDLVTIQNPKDHEAWETRYMLLLWL VTIQNPKDHEAWETRYMLLLWLSVTCLIPF K D H T R Y 1 1 0 1 0 0 2 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 8 0 1042.4468 Q9BTW9;J3KR97 Q9BTW9 143 150 TBCD Tubulin-specific chaperone D yes no 2 0.036811 37.558 By MS/MS 1 1.5239 1.3072 NaN 1 Median NaN NaN NaN 0 0 Median 1.5239 1.3072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1965500 717370 1248100 0 0 0 1965500 717370 1248100 0 0 0 0 0 0 0 0 0 0 0 0 4325 1324 4505 22287 22850 22850 1 DHEDYDPQTVR ENLATYMESMRLYARDHEDYDPQTVRLGSR LYARDHEDYDPQTVRLGSRYSHVQEVQERL R D H V R L 0 1 0 3 0 1 1 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 11 0 1373.5848 Q93008 Q93008 633 643 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.00011219 124.23 By MS/MS 1 1.0993 0.92543 NaN 1 Median NaN NaN NaN 0 0 Median 1.0993 0.92543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1981800 953440 1028300 0 0 0 1981800 953440 1028300 0 0 0 0 0 0 0 0 0 0 0 0 4326 3573 4506 22288 22851;22852 22852 2 DHENIVIAK KQLAPIWDKLGETYKDHENIVIAKMDSTAN LGETYKDHENIVIAKMDSTANEVEAVKVHS K D H A K M 1 0 1 1 0 0 1 0 1 2 0 1 0 0 0 0 0 0 0 1 0 0 9 0 1037.5506 P07237;H7BZ94;H0Y3Z3 P07237 416 424 P4HB Protein disulfide-isomerase yes no 2 0.0022552 73.26 By MS/MS 1 1.3702 1.1731 NaN 1 Median NaN NaN NaN 0 0 Median 1.3702 1.1731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2619000 1062600 1556400 0 0 0 2619000 1062600 1556400 0 0 0 0 0 0 0 0 0 0 0 0 4327 1883 4507 22289 22853 22853 1 DHFEEAMR AMEVEEDDPVPEIRRDHFEEAMRFARRSVS PVPEIRRDHFEEAMRFARRSVSDNDIRKYE R D H M R F 1 1 0 1 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 8 0 1033.4287 P55072 P55072 734 741 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS 2 2 1 1.2391 1.0716 20.547 5 Median 1.3473 1.2969 31.236 2 0 Median 1.1665 1.0086 8.5695 2 0 Median NaN NaN NaN 0 0 Median 1.3862 1.1785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35266000 15015000 20251000 10208000 4167200 6041200 24589000 10672000 13916000 0 0 0 468640 175050 293590 0 0 0 0 0 0 4328 2494 4508 22290;22291;22292;22293;22294 22854;22855;22856;22857;22858;22859 22858 6 DHFGRPPVDIR IDPREGPGRPPLDGRDHFGRPPVDIRENLV LDGRDHFGRPPVDIRENLVRPGIDHLGRRD R D H I R E 0 2 0 2 0 0 0 1 1 1 0 0 0 1 2 0 0 0 0 1 0 0 11 1 1307.6735 A0A0A0MT33;Q9UPN6 A0A0A0MT33 1136 1146 SCAF8 Protein SCAF8 yes no 3 0.017393 41.338 By MS/MS 1 0.62797 0.76375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62797 0.76375 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5146800 2865600 2281200 0 0 0 0 0 0 5146800 2865600 2281200 0 0 0 0 0 0 0 0 0 4329 186 4509 22295 22860 22860 1 DHGLEVLGLVR LEQLHAVEISAVHSRDHGLEVLGLVRVPLY VHSRDHGLEVLGLVRVPLYTQKDRVGGFPN R D H V R V 0 1 0 1 0 0 1 2 1 0 3 0 0 0 0 0 0 0 0 2 0 0 11 0 1206.6721 Q9BRJ7;K7EIN2 Q9BRJ7 134 144 NUDT16L1 Protein syndesmos no no 2;3 5.3825E-05 120.15 By matching By MS/MS By MS/MS 1 2 2 1.1134 1.1743 83.792 5 Median NaN NaN NaN 0 0 Median 0.20541 0.18655 NaN 1 0 Median 1.2577 1.1991 20.618 2 0 Median NaN NaN NaN 0 0 Median 1.1833 1.1957 2.561 2 0 Median NaN NaN NaN 0 0 Median 22114000 13126000 8987200 0 0 0 8100800 6573500 1527300 12809000 6014600 6794100 0 0 0 1204200 538440 665790 0 0 0 4330 3796 4510 22296;22297;22298;22299;22300 22861;22862;22863;22864;22865 22862 5 DHGYTTLATSVTLLK IVASSHGKKTKPNTKDHGYTTLATSVTLLK DHGYTTLATSVTLLKASEVEEILDGNDEKY K D H L K A 1 0 0 1 0 0 0 1 1 0 3 1 0 0 0 1 4 0 1 1 0 0 15 0 1618.8566 Q12824;A0A0G2JRV3;C9JTA6;A0A0G2JSE9;A0A0U1RRB8;A0A2R8Y5N5 Q12824 78 92 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes no 2;3 1.3767E-06 79.614 By MS/MS By matching 4 1 1.1014 1.0576 3.4509 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0716 1.063 3.9794 4 2 Median 1.1864 1.0576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33793000 15640000 18152000 0 0 0 0 0 0 31773000 14710000 17063000 2019800 930210 1089600 0 0 0 0 0 0 4331 2761 4511 22301;22302;22303;22304;22305 22866;22867;22868;22869;22870;22871 22869 6 DHIIDDALVR QGQQLNPYLRLKVRRDHIIDDALVRLEMIA LKVRRDHIIDDALVRLEMIAMENPADLKKQ R D H V R L 1 1 0 3 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1165.6091 A0A0D9SG77;A0A1B0GVL3;Q05086 A0A0D9SG77 507 516 UBE3A Ubiquitin-protein ligase E3A yes no 2 0.025636 49.715 By MS/MS 1 0.7509 0.73188 NaN 1 Median 0.7509 0.73188 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3032100 2026700 1005300 3032100 2026700 1005300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4332 272 4512 22306 22872 22872 1 DHIKDEWEGLR PTRVRADVTINLNVRDHIKDEWEGLRKHDV LNVRDHIKDEWEGLRKHDVCFLITVRPTKP R D H L R K 0 1 0 2 0 0 2 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 11 1 1396.6735 O60306;H0YH15 O60306 547 557 AQR Intron-binding protein aquarius yes no 3 0.0016313 46.73 By matching By MS/MS By matching 1 1 1 1.1411 1.1791 6.5187 3 Median NaN NaN NaN 0 0 Median 1.3002 1.2549 NaN 1 0 Median 1.0396 1.1791 NaN 1 0 Median 1.1411 1.1016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4559300 2066500 2492900 0 0 0 655110 254720 400380 3571900 1649300 1922700 332260 162460 169800 0 0 0 0 0 0 4333 1611 4513 22307;22308;22309 22873;22874 22873 2 DHIMEIFSTYGK PTKVHIGRLTRNVTKDHIMEIFSTYGKIKM VTKDHIMEIFSTYGKIKMIDMPVERMHPHL K D H G K I 0 0 0 1 0 0 1 1 1 2 0 1 1 1 0 1 1 0 1 0 0 0 12 0 1439.6755 H3BV80;H3BMM9;H3BTC0;Q15287;H3BMS0 H3BV80 81 92 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2;3 5.6521E-06 116.52 By MS/MS By MS/MS By matching 2 5 3 1.1059 1.1198 20.942 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0178 1.0629 20.741 2 0 Median NaN NaN NaN 0 0 Median 1.11 1.095 6.1981 5 0 Median 1.4325 1.1743 40.908 3 0 Median 36336000 17827000 18509000 0 0 0 0 0 0 9154000 5321200 3832800 0 0 0 26551000 12253000 14297000 631430 252270 379160 4334 1212 4514 22310;22311;22312;22313;22314;22315;22316;22317;22318;22319 22875;22876;22877;22878;22879;22880;22881 22877 7 DHINDIIK HQARKRYRDRLQYFRDHINDIIKIQAFIRA DRLQYFRDHINDIIKIQAFIRANKARDDYK R D H I K I 0 0 1 2 0 0 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 966.51345 P46940;A0A0J9YXZ5;H0YLE8 P46940 834 841 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0023587 128.12 By MS/MS By MS/MS 2 3 1.108 0.95809 5.5057 5 Median 1.0226 1.0101 9.0319 2 0 Median 1.108 0.95809 2.2272 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36364000 17190000 19174000 13261000 6053000 7207700 23103000 11137000 11966000 0 0 0 0 0 0 0 0 0 0 0 0 4335 2350 4515 22320;22321;22322;22323;22324 22882;22883;22884;22885;22886;22887;22888;22889;22890;22891 22887 10 DHINLPGFSGQNPLR GLNPKFEVGDIMLIRDHINLPGFSGQNPLR DHINLPGFSGQNPLRGPNDERFGDRFPAMS R D H L R G 0 1 2 1 0 1 0 2 1 1 2 0 0 1 2 1 0 0 0 0 0 0 15 0 1663.8431 P00491;G3V5M2 P00491 134 148 PNP Purine nucleoside phosphorylase yes no 2;3 8.8537E-05 66.285 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.71364 0.64951 50.469 6 Median 0.62405 0.58402 12.875 2 0 Median 0.80787 0.68475 10.891 2 0 Median 0.68988 0.65948 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8328 2.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median 22350000 12423000 9927000 16355000 9323100 7031800 3802200 2106700 1695400 1105500 591070 514410 0 0 0 1087300 401930 685360 0 0 0 4336 1821 4516 22325;22326;22327;22328;22329;22330 22892;22893;22894;22895;22896;22897 22892 6 DHIPITDSPVVVQQHMLPPKK IDELKVDKIITPLNKDHIPITDSPVVVQQH DSPVVVQQHMLPPKKFVLLSAQGSLMFHKL K D H K K F 0 0 0 2 0 2 0 0 2 2 1 2 1 0 4 1 1 0 0 3 0 0 21 1 2378.278 O75694;E9PF10 O75694 479 499 NUP155 Nuclear pore complex protein Nup155 yes no 4 0.00027697 29.136 By MS/MS 1 0.75818 0.87534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75818 0.87534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9183600 4629000 4554600 0 0 0 0 0 0 9183600 4629000 4554600 0 0 0 0 0 0 0 0 0 4337 1692 4517 22331 22898 22898 1 DHISHFILR SYRENLEDEYEPRRRDHISHFILRLAYCQS YEPRRRDHISHFILRLAYCQSEELRRWFIQ R D H L R L 0 1 0 1 0 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1136.6091 P49643 P49643 99 107 PRIM2 DNA primase large subunit yes yes 2 0.0060753 55.676 By MS/MS 1 1.6104 1.3858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6104 1.3858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1890000 748560 1141500 0 0 0 0 0 0 0 0 0 1890000 748560 1141500 0 0 0 0 0 0 4338 2389 4518 22332 22899 22899 1 DHLYGTLDPNTR VEGVAHIIDPKAISKDHLYGTLDPNTREWT ISKDHLYGTLDPNTREWTDGLFTHVLRKII K D H T R E 0 1 1 2 0 0 0 1 1 0 2 0 0 0 1 0 2 0 1 0 0 0 12 0 1400.6684 Q14204;A0A2R8YFZ7 Q14204 2262 2273 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00015992 146.11 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.99876 0.84408 19.146 4 Median 0.67823 0.67357 NaN 1 0 Median 1.0396 0.83112 NaN 1 0 Median 1.0138 1.0754 NaN 1 0 Median 0.9839 0.85725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50311000 25892000 24419000 6829200 4168500 2660700 31377000 15732000 15645000 7503500 3744300 3759200 4600500 2246600 2353900 0 0 0 0 0 0 4339 2865 4519 22333;22334;22335;22336 22900;22901;22902;22903;22904 22900 5 DHMGSVMAQVR EEAVMHLDHSDPITRDHMGSVMAQVRQKLF PITRDHMGSVMAQVRQKLFQFLQAEPHNSL R D H V R Q 1 1 0 1 0 1 0 1 1 0 0 0 2 0 0 1 0 0 0 2 0 0 11 0 1229.5645 Q6P2E9;I3L3M2;I3L0V0 Q6P2E9 1356 1366 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 0.0016501 57.859 By MS/MS By MS/MS 1 2 1.4299 1.3719 15.777 3 Median 1.4299 1.3719 NaN 1 1 Median 1.4779 1.2537 21.062 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8823900 3494600 5329300 4603400 1733900 2869500 4220500 1760700 2459800 0 0 0 0 0 0 0 0 0 0 0 0 4340 3155 4520 22337;22338;22339 22905;22906 22906 2 DHNIPGELER IQYLAHVASSHKGRKDHNIPGELERQLLQA HKGRKDHNIPGELERQLLQANPILESFGNA K D H E R Q 0 1 1 1 0 0 2 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1178.568 P35580 P35580 207 216 MYH10 Myosin-10 yes yes 2 0.00070879 107.57 By MS/MS 1 1.2289 1.0357 NaN 1 Median NaN NaN NaN 0 0 Median 1.2289 1.0357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2146600 848540 1298100 0 0 0 2146600 848540 1298100 0 0 0 0 0 0 0 0 0 0 0 0 4341 2245 4521 22340 22907 22907 1 DHNVEFR IIKEVLLEAQDMAVRDHNVEFRSNLYIAES EAQDMAVRDHNVEFRSNLYIAESTSGRGQC R D H F R S 0 1 1 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 915.41988 J3KQY1;E7ESL0;Q9NWU5 J3KQY1 151 157 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.029709 50.127 By MS/MS By matching 1 1 1.0871 0.96039 21.338 2 Median NaN NaN NaN 0 0 Median 1.3363 1.1168 NaN 1 0 Median 0.88441 0.82589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1180600 467410 713180 0 0 0 649170 210300 438870 531420 257110 274310 0 0 0 0 0 0 0 0 0 4342 887 4522 22341;22342 22908 22908 1 DHPALNYNIVSGPPSHK IEEWQPEPLVPPVPKDHPALNYNIVSGPPS PALNYNIVSGPPSHKTVVNGKECINFASFN K D H H K T 1 0 2 1 0 0 0 1 2 1 1 1 0 0 3 2 0 0 1 1 0 0 17 0 1844.9169 O15269;A0A2R8Y4S0;A0A2R8Y6A2 O15269 76 92 SPTLC1 Serine palmitoyltransferase 1 yes no 3 2.5129E-06 82.007 By MS/MS By MS/MS 1 1 0.64138 0.61209 6.1389 2 Median 0.63191 0.58609 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65099 0.63925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17715000 10536000 7179000 11859000 6808800 5050000 0 0 0 5856600 3727600 2129100 0 0 0 0 0 0 0 0 0 4343 1536 4523 22343;22344 22909;22910;22911;22912 22910 4 DHPAVAATLNNLAVLYGK LLNDALAIREKTLGKDHPAVAATLNNLAVL AVAATLNNLAVLYGKRGKYKEAEPLCKRAL K D H G K R 4 0 2 1 0 0 0 1 1 0 3 1 0 0 1 0 1 0 1 2 0 0 18 0 1865.9999 Q9H0B6;A8MZ87;G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 290 307 KLC2;KLC1 Kinesin light chain 2;Kinesin light chain 1 no no 3 0.013176 20.65 By matching By MS/MS 1 1 0.83413 0.76136 1.919 2 Median 0.79617 0.77176 NaN 1 0 Median 0.87391 0.7511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3887100 1846600 2040500 633870 271130 362740 3253200 1575500 1677700 0 0 0 0 0 0 0 0 0 0 0 0 4344 896;3922 4524 22345;22346 22913 22913 1 DHPFGFVAVPTK ______________________________ WRKDHPFGFVAVPTKNPDGTMNLMNWECAI K D H T K N 1 0 0 1 0 0 0 1 1 0 0 1 0 2 2 0 1 0 0 2 0 0 12 0 1313.6768 H3BPC4;H3BQQ9;B0QYN7;P63279 H3BPC4 15 26 UBE2I SUMO-conjugating enzyme UBC9 yes no 2;3 3.5137E-06 123.75 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 2 0.80474 0.75026 10.214 9 Median 0.7784 0.73205 0.068073 2 0 Median 0.94122 0.80741 10.382 2 0 Median 0.78227 0.73983 12.79 4 1 Median 0.92895 0.76675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201130000 107260000 93874000 79831000 43826000 36005000 20346000 9463200 10883000 100040000 53510000 46528000 916360 457080 459280 0 0 0 0 0 0 4345 558 4525 22347;22348;22349;22350;22351;22352;22353;22354;22355;22356;22357 22914;22915;22916;22917;22918;22919;22920;22921;22922;22923;22924;22925;22926;22927;22928;22929;22930;22931 22915 18 DHPHTAAYLQELGR AQACHAATAALHTHRDHPHTAAYLQELGRM RDHPHTAAYLQELGRMRKVVLEAPDETTLK R D H G R M 2 1 0 1 0 1 1 1 2 0 2 0 0 0 1 0 1 0 1 0 0 0 14 0 1606.7852 Q6GMV3 Q6GMV3 64 77 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 3 1.4946E-06 94.023 By matching By MS/MS By MS/MS 1 1 1 1.0004 0.97688 1.0304 3 Median 1.0004 0.97688 NaN 1 0 Median 1.1693 0.99329 NaN 1 0 Median 0.96064 0.97476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16010000 7579800 8430000 2581600 1280900 1300700 8399500 3918900 4480600 5028700 2379900 2648800 0 0 0 0 0 0 0 0 0 4346 3135 4526 22358;22359;22360 22932;22933;22934 22934 3 DHPLPEVAHVK VKSEDFSLPAYMDRRDHPLPEVAHVKHLSA MDRRDHPLPEVAHVKHLSASQKALKEKEKA R D H V K H 1 0 0 1 0 0 1 0 2 0 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1240.6564 P13073;H3BPG0;H3BN72;H3BNV9;Q86WV2 P13073 43 53 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2;3 3.7999E-05 87.568 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 0.99258 0.84964 29.95 9 Median 0.65113 0.6135 51.148 3 1 Median 1.0356 0.86213 2.8686 4 0 Median 0.64031 0.612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79887 0.6544 NaN 1 0 Median 87591000 46908000 40683000 27447000 16419000 11028000 45684000 21503000 24181000 13994000 8756600 5237900 0 0 0 0 0 0 466170 229530 236640 4347 1988 4527 22361;22362;22363;22364;22365;22366;22367;22368;22369 22935;22936;22937;22938;22939;22940;22941;22942;22943;22944;22945;22946;22947;22948;22949;22950 22935 16 DHPYIQYNVLWEEGK PRRQEHDISLDRIPRDHPYIQYNVLWEEGK DHPYIQYNVLWEEGKAALEQLLKFMVHPAI R D H G K A 0 0 1 1 0 1 2 1 1 1 1 1 0 0 1 0 0 1 2 1 0 0 15 0 1889.8948 Q92797;A0A087WUE9;M0R3C7 Q92797 219 233 SYMPK Symplekin yes no 3 0.0003416 41.378 By MS/MS By matching 1 1 0.99751 0.97455 16.542 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0098 1.0955 NaN 1 0 Median 0.9854 0.86697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4941500 3008500 1932900 0 0 0 0 0 0 4826600 2957400 1869200 114840 51178 63667 0 0 0 0 0 0 4348 3558 4528 22370;22371 22951;22952 22952 2 DHQTITIQEMPEK ENNPLETEYGLSVYKDHQTITIQEMPEKAP YKDHQTITIQEMPEKAPAGQLPRSVDVILD K D H E K A 0 0 0 1 0 2 2 0 1 2 0 1 1 0 1 0 2 0 0 0 0 0 13 0 1568.7505 P25205;J3KQ69;A0A499FHX9 P25205 195 207 MCM3 DNA replication licensing factor MCM3 yes no 2;3 3.824E-05 83.53 By matching By MS/MS By MS/MS By MS/MS 1 3 2 2 0.84614 0.79283 16.672 8 Median 0.68758 0.66423 NaN 1 0 Median 0.8906 0.76242 16.26 3 0 Median 0.70028 0.76815 14.452 2 0 Median 1.0788 0.93748 18.17 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25707000 13058000 12649000 2060100 1313000 747080 10530000 4920800 5609100 10542000 5738800 4802700 2575400 1085800 1489700 0 0 0 0 0 0 4349 2129 4529 22372;22373;22374;22375;22376;22377;22378;22379 22953;22954;22955;22956;22957;22958;22959;22960 22954 8 DHQTITIQEMPEKAPAGQLPR ENNPLETEYGLSVYKDHQTITIQEMPEKAP IQEMPEKAPAGQLPRSVDVILDDDLVDKAK K D H P R S 2 1 0 1 0 3 2 1 1 2 1 1 1 0 3 0 2 0 0 0 0 0 21 1 2359.1954 P25205;J3KQ69;A0A499FHX9 P25205 195 215 MCM3 DNA replication licensing factor MCM3 yes no 3;4 3.6382E-12 75.122 By MS/MS By MS/MS 1 2 0.55359 0.62726 8.1812 3 Median 0.5252 0.54715 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55607 0.63029 0.68299 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33756000 20487000 13268000 10550000 5013800 5536600 0 0 0 23205000 15474000 7731700 0 0 0 0 0 0 0 0 0 4350 2129 4530 22380;22381;22382 22961;22962;22963 22962 3 DHQYQFLEDAVR CDTLTCRDCQLNAHKDHQYQFLEDAVRNQR AHKDHQYQFLEDAVRNQRKLLASLVKRLGD K D H V R N 1 1 0 2 0 2 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 12 0 1519.7056 Q13263;M0R3C0;M0R2I3 Q13263 239 250 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 3.2604E-31 177.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 5 6 3 2 1.1033 1.0133 16.587 27 Median 1.018 0.98101 12.906 5 2 Median 1.1259 1.0054 5.7617 6 0 Median 0.98119 1.0323 6.5447 5 0 Median 1.2371 1.0671 6.8267 6 0 Median 1.016 1.0639 39.802 3 0 Plateau 0.95117 0.8345 30.505 2 0 Median 174850000 81407000 93446000 61229000 27050000 34179000 15750000 7457400 8293000 81894000 39466000 42428000 6209600 2696200 3513400 8853200 4336500 4516700 916260 400070 516190 4351 2802 4531 22383;22384;22385;22386;22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397;22398;22399;22400;22401;22402;22403;22404;22405;22406;22407;22408;22409 22964;22965;22966;22967;22968;22969;22970;22971;22972;22973;22974;22975;22976;22977;22978;22979;22980 22967 17 DHRDNLEFFLAGIGR RGLKPSCTIIPLMKKDHRDNLEFFLAGIGR DHRDNLEFFLAGIGRLHLSGIDANPNALFP K D H G R L 1 2 1 2 0 0 1 2 1 1 2 0 0 2 0 0 0 0 0 0 0 0 15 1 1758.8802 P49327;A0A0U1RQF0 P49327 788 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.00011112 56.147 By MS/MS By MS/MS 2 3 1.1429 1.2318 14.044 5 Median 1.0374 1.1308 16.395 2 0 Median 1.2657 1.2782 16.101 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12216000 5510400 6706000 7576300 3586900 3989400 4640100 1923500 2716600 0 0 0 0 0 0 0 0 0 0 0 0 4352 2377 4532 22410;22411;22412;22413;22414 22981;22982;22983 22982 3 DHSGTLGPEEFK EQMNEFRASFNHFDRDHSGTLGPEEFKACL FDRDHSGTLGPEEFKACLISLGYDIGNDPQ R D H F K A 0 0 0 1 0 0 2 2 1 0 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1315.6044 P12814 P12814 761 772 ACTN1 Alpha-actinin-1 yes yes 2 0.026786 47.706 By MS/MS 1 1.513 1.3315 NaN 1 Median NaN NaN NaN 0 0 Median 1.513 1.3315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2973600 969670 2003900 0 0 0 2973600 969670 2003900 0 0 0 0 0 0 0 0 0 0 0 0 4353 1983 4533 22415 22984 22984 1 DHSVQLPKPVHKPNR PLMSESTSNIDQGPRDHSVQLPKPVHKPNR DHSVQLPKPVHKPNRWCFYSSCEQLDQLIE R D H N R W 0 1 1 1 0 1 0 0 2 0 1 2 0 0 3 1 0 0 0 2 0 0 15 2 1750.9591 Q9NRL2 Q9NRL2 877 891 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 4 0.0011236 36.77 By MS/MS By matching 1 1 0.68601 0.83422 8.2624 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59559 0.78688 NaN 1 0 Median 0.79015 0.88441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1690300 947310 742960 0 0 0 0 0 0 1416900 831900 584980 273390 115410 157980 0 0 0 0 0 0 4354 4084 4534 22416;22417 22985;22986 22985 2 DHTFLYEK MVSIIAMGNTLQSFRDHTFLYEKLYTGKPN NTLQSFRDHTFLYEKLYTGKPNLVNGLQAR R D H E K L 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1051.4975 Q9UKR5 Q9UKR5 29 36 C14orf1 Probable ergosterol biosynthetic protein 28 yes yes 2 0.0022847 110.31 By MS/MS 1 1.4295 1.1807 NaN 1 Median NaN NaN NaN 0 0 Median 1.4295 1.1807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5363800 2126300 3237400 0 0 0 5363800 2126300 3237400 0 0 0 0 0 0 0 0 0 0 0 0 4355 4315 4535 22418 22987 22987 1 DHTLEDEDVIQIVK VWGLSVKHNPQKVGKDHTLEDEDVIQIVKK KDHTLEDEDVIQIVKK______________ K D H V K K 0 0 0 3 0 1 2 0 1 2 1 1 0 0 0 0 1 0 0 2 0 0 14 0 1652.8257 Q9Y295 Q9Y295 353 366 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2;3 3.9843E-06 134.99 By MS/MS By matching 2 1 1.387 1.4337 16.071 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3773 1.4528 1.8775 2 1 Median 1.2981 1.1009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14285000 6017200 8267400 0 0 0 0 0 0 14010000 5881000 8129300 274250 136170 138080 0 0 0 0 0 0 4356 4382 4536 22419;22420;22421 22988;22989;22990 22988 3 DHTLVQTIAR LKFIDPFCKIAAKTKDHTLVQTIARGVFEA AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K D H A R G 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1152.6251 Q14684 Q14684 205 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.00038123 80.165 By MS/MS By matching 1 1 0.73022 0.73632 51.923 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99559 1.063 NaN 1 0 Median 0.53558 0.51005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6241700 3508300 2733300 0 0 0 0 0 0 4919000 2604200 2314700 1322700 904120 418580 0 0 0 0 0 0 4357 2890 4537 22422;22423 22991 22991 1 DHTPSQELALTQSVGGDSSADR YEIDACMDSEAPGSKDHTPSQELALTQSVG LALTQSVGGDSSADRLFPPQWICCDIRYLD K D H D R L 2 1 0 3 0 2 1 2 1 0 2 0 0 0 1 4 2 0 0 1 0 0 22 0 2270.0411 Q86U44;H0YFV6 Q86U44 346 367 METTL3 N6-adenosine-methyltransferase 70 kDa subunit yes no 3 8.3277E-07 39.659 By MS/MS 1 1.0729 0.89625 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0729 0.89625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2185600 1250000 935630 0 0 0 0 0 0 0 0 0 2185600 1250000 935630 0 0 0 0 0 0 4358 3271 4538 22424 22992 22992 1 DHVVSDFSEHGSLK GLEGLLTTKWLLRGKDHVVSDFSEHGSLKY KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ K D H L K Y 0 0 0 2 0 0 1 1 2 0 1 1 0 1 0 3 0 0 0 2 0 0 14 0 1555.7267 P54886 P54886 768 781 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 3.1302E-06 89.26 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1772 1.2106 52.251 5 Median 1.3134 1.2931 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1996 1.2552 5.1236 2 0 Median 1.1604 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45718 0.38076 NaN 1 0 Median 17434000 8004700 9429700 2075300 823130 1252200 0 0 0 10118000 4518900 5598700 4795600 2406000 2389600 0 0 0 445850 256700 189150 4359 2488 4539 22425;22426;22427;22428;22429 22993;22994;22995 22994 3 DHVYLQLHHLPPEQLATR MTLEIREGRGCGPEKDHVYLQLHHLPPEQL YLQLHHLPPEQLATRLPGISETAMIFAGVD K D H T R L 1 1 0 1 0 2 1 0 3 0 4 0 0 0 2 0 1 0 1 1 0 0 18 0 2166.1334 P31040;D6RFM5;A0A087X1I3 P31040 362 379 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 3.0901E-06 52.612 By MS/MS 1 0.60708 0.5979 NaN 1 Median 0.60708 0.5979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3680500 2106800 1573700 3680500 2106800 1573700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4360 2200 4540 22430 22996 22996 1 DHYEATAMHR IAVMLLEGGANPDAKDHYEATAMHRAAAKG NPDAKDHYEATAMHRAAAKGNLKMIHILLY K D H H R A 2 1 0 1 0 0 1 0 2 0 0 0 1 0 0 0 1 0 1 0 0 0 10 0 1229.5248 B1AJY5;B1AJY7;O75832;B1AJY6 B1AJY5 95 104 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 3 0.0027481 44.309 By MS/MS By matching 1 1 1.3295 1.1895 16.119 2 Median 1.1326 1.0614 NaN 1 0 Median 1.5606 1.3331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 965950 445470 520480 616250 315990 300260 349690 129480 220220 0 0 0 0 0 0 0 0 0 0 0 0 4361 564 4541 22431;22432 22997;22998 22997 2 DIAAYIK VDCATQAMEKYNIEKDIAAYIKKEFDKKYN MEKYNIEKDIAAYIKKEFDKKYNPTWHCIV K D I I K K 2 0 0 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 7 0 792.43815 Q96FJ2 Q96FJ2 37 43 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 2 0.030618 64.776 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8299000 0 8299000 0 0 0 5064300 0 5064300 0 0 0 3234700 0 3234700 0 0 0 0 0 0 4362 3649 4542 22433;22434 22999;23000 23000 2 DIAAYIKK VDCATQAMEKYNIEKDIAAYIKKEFDKKYN EKYNIEKDIAAYIKKEFDKKYNPTWHCIVG K D I K K E 2 0 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 1 0 0 0 8 1 920.53312 Q96FJ2 Q96FJ2 37 44 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 2 0.0092652 70.912 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 2 1.0744 0.95287 35.623 9 Median 1.0515 0.98468 NaN 1 0 Median 1.3418 0.95287 13.433 3 0 Median 1.0507 0.9019 25.547 2 0 Median 1.4457 1.2125 NaN 1 0 Median 0.68277 0.57783 61.812 2 0 Median NaN NaN NaN 0 0 Median 80167000 36815000 43352000 16484000 7933500 8550600 26757000 10930000 15827000 23055000 10916000 12138000 4151000 1583100 2567900 9720500 5452700 4267800 0 0 0 4363 3649 4543 22435;22436;22437;22438;22439;22440;22441;22442;22443 23001;23002;23003;23004;23005;23006;23007;23008;23009;23010;23011 23010 11 DIATETVGTGIMGK MLLIFARKDQCRYIRDIATETVGTGIMGKM RDIATETVGTGIMGKMGNKGGVAVRFVFHN R D I G K M 1 0 0 1 0 0 1 3 0 2 0 1 1 0 0 0 3 0 0 1 0 0 14 0 1391.6966 Q01968;A0A2R8YG38;A0A2R8YCN4 Q01968 338 351 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 2 0.0032436 57.348 By MS/MS 1 1.6333 1.5916 NaN 1 Median 1.6333 1.5916 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5487500 1942300 3545200 5487500 1942300 3545200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4364 2694 4544 22444 23012 23012 1 DIATIVADK VSDKERHTQLEQMFRDIATIVADKCVNPET LEQMFRDIATIVADKCVNPETKRPYTVILI R D I D K C 2 0 0 2 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 9 0 944.51786 Q9Y3A5;A0A087X020 Q9Y3A5 110 118 SBDS Ribosome maturation protein SBDS yes no 2 0.0086001 66.692 By MS/MS By MS/MS 1 1 1.0123 0.90274 27.91 2 Median NaN NaN NaN 0 0 Median 1.2962 1.0997 NaN 1 1 Median 0.79057 0.74106 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17683000 9258300 8424400 0 0 0 1959700 810370 1149300 15723000 8448000 7275100 0 0 0 0 0 0 0 0 0 4365 100 4545 22445;22446 23013;23014 23013 2 DIDAFWLQR SGELMSSKKKDLHPRDIDAFWLQRQLSRFY KDLHPRDIDAFWLQRQLSRFYDDAIVSQKK R D I Q R Q 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 9 0 1162.5771 O75643;A0A494C1A5 O75643 262 270 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00074849 100.45 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 2 1.2863 1.2547 12.242 7 Median 1.2662 1.2553 0.067602 2 0 Median 1.3233 1.1124 NaN 1 0 Median 1.0277 1.1264 NaN 1 0 Median 1.3701 1.1989 NaN 1 0 Median 1.4065 1.4736 10.17 2 0 Median NaN NaN NaN 0 0 Median 19239000 8862700 10376000 7944800 3517700 4427100 1849100 755830 1093300 7569300 3822300 3747000 409830 175190 234640 1466100 591640 874480 0 0 0 4366 1688 4546 22447;22448;22449;22450;22451;22452;22453 23015;23016;23017;23018;23019;23020;23021 23015 7 DIDENAYAK CDLLMEIEQVDMLEKDIDENAYAKVCLYLT VDMLEKDIDENAYAKVCLYLTSCVNYVPEP K D I A K V 2 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1037.4666 Q13200 Q13200 220 228 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.0078737 50.607 By MS/MS 1 1.1919 1.1599 NaN 1 Median 1.1919 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6140600 2733500 3407100 6140600 2733500 3407100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4367 2796 4547 22454 23022;23023 23022 2 DIDEVSSLLR EILPNLVCCSAKNLRDIDEVSSLLRTSIMS AKNLRDIDEVSSLLRTSIMSKQYGNEVFLA R D I L R T 0 1 0 2 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1145.5928 P50990;H7C4C8 P50990 156 165 CCT8 T-complex protein 1 subunit theta yes no 2 0.0011606 67.993 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 5 1 1 1 2 1.1892 1.0442 21.52 12 Median 1.2139 1.1572 14.06 2 0 Median 1.1959 1.0408 18.222 5 0 Median 1.2943 1.2893 NaN 1 0 Median 1.2952 1.1159 NaN 1 0 Median 0.6583 0.6992 NaN 1 0 Median 1.0004 0.84886 12.325 2 0 Median 243050000 107740000 135320000 67695000 29335000 38361000 153200000 68686000 84515000 16663000 6891900 9771500 1634500 754630 879870 778180 484730 293450 3080600 1585500 1495100 4368 2423 4548 22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466 23024;23025;23026;23027;23028;23029;23030;23031;23032;23033 23030 10 DIDHETVVEEQIIGENSPPDYSEYMTGK EGEFSVTMWSSDEKKDIDHETVVEEQIIGE GENSPPDYSEYMTGKKLPPGGIPGIDLSDP K D I G K K 0 0 1 3 0 1 5 2 1 3 0 1 1 0 2 2 2 0 2 2 0 0 28 0 3194.4238 P25490;H0YJV7;H0YJU4;A0A494C032 P25490 231 258 YY1 Transcriptional repressor protein YY1 yes no 3 3.2394E-29 82.342 By MS/MS By matching 1 1 0.62161 0.57783 6.2665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56073 0.55278 NaN 1 0 Median 0.6891 0.60401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8195100 4983600 3211500 0 0 0 0 0 0 7803500 4796000 3007400 391670 187560 204110 0 0 0 0 0 0 4369 2133 4549 22467;22468 23034;23035 23034 2 DIDIHEVR MKVTEKIPVRHLYTKDIDIHEVRIGWSLTT VRHLYTKDIDIHEVRIGWSLTTSGMLLGEE K D I V R I 0 1 0 2 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 995.50361 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 353 360 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.0023085 137.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 3 3 6 1.163 1.003 36.048 18 Median 0.8559 0.83612 11.823 3 1 Median 1.2321 1.0382 0.16826 2 1 Median 1.0968 1.1545 81.329 4 2 Median 1.2781 1.0801 NaN 1 0 Median 1.062 1.0373 1.6656 3 0 Plateau 1.1979 0.99029 1.7331 5 0 Median 578420000 286590000 291840000 39116000 20015000 19102000 72255000 30667000 41587000 100340000 64172000 36165000 23402000 9917800 13484000 280930000 134760000 146170000 62381000 27058000 35323000 4370 2680 4550 22469;22470;22471;22472;22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483;22484;22485;22486;22487;22488;22489;22490;22491 23036;23037;23038;23039;23040;23041;23042;23043;23044;23045;23046;23047;23048;23049;23050;23051;23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072 23047 37 DIDILNSAGK LSKMQREWYTRILMKDIDILNSAGKMDKMR RILMKDIDILNSAGKMDKMRLLNILMQLRK K D I G K M 1 0 1 2 0 0 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1044.5451 O60264 O60264 431 440 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00036244 87.308 By MS/MS By matching 3 2 0.87792 0.83357 64.314 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87792 0.89521 39.311 3 0 Median 0.51096 0.42354 95.752 2 0 Median 27819000 14342000 13478000 0 0 0 0 0 0 0 0 0 0 0 0 24156000 12430000 11726000 3663200 1911600 1751600 4371 1608 4551 22492;22493;22494;22495;22496 23073;23074 23073 2 DIDISSPEFK VTAYTVDVTGREGAKDIDISSPEFKIKIPR REGAKDIDISSPEFKIKIPRHELTEISNVD K D I F K I 0 0 0 2 0 0 1 0 0 2 0 1 0 1 1 2 0 0 0 0 0 0 10 0 1149.5554 Q09666 Q09666 172 181 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00041321 76.064 By matching By MS/MS By MS/MS By matching 3 1 2 1 0.94928 0.903 11.905 7 Median NaN NaN NaN 0 0 Median 1.1299 0.98552 14.897 3 0 Median 0.90552 0.96823 NaN 1 0 Median 0.88416 0.82585 6.2737 2 0 Median 0.85877 0.903 NaN 1 0 Median NaN NaN NaN 0 0 Median 21554000 10709000 10845000 0 0 0 5989700 2478800 3510900 11057000 5957500 5100000 3143800 1649300 1494500 1362800 623040 739730 0 0 0 4372 2749 4552 22497;22498;22499;22500;22501;22502;22503 23075;23076;23077;23078 23078 4 DIDNLVQR QHFIDIKEHLHIVKRDIDNLVQRNMPSNEK HLHIVKRDIDNLVQRNMPSNEKPKCPELPP R D I Q R N 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 971.50361 P49257 P49257 449 456 LMAN1 Protein ERGIC-53 yes yes 2 0.0024657 108.24 By MS/MS By MS/MS 1 1 1.1902 1.0608 7.6591 2 Median 1.0635 1.0048 NaN 1 0 Median 1.332 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36768000 16129000 20639000 22268000 10056000 12211000 14501000 6073200 8427400 0 0 0 0 0 0 0 0 0 0 0 0 4373 2375 4553 22504;22505 23079;23080;23081 23080 3 DIDNNLITSTPR KEERENPSKRSRIERDIDNNLITSTPRAGE IERDIDNNLITSTPRAGEKPNKQISRVRRK R D I P R A 0 1 2 2 0 0 0 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1357.6838 Q05D32;H0YNU2;H0YNW9;H0YMH7 Q05D32 77 88 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.00034368 147.74 By MS/MS By MS/MS By matching 1 2 3 0.84181 0.8392 53.243 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54654 0.57245 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85543 0.87979 6.68 2 0 Median 0.89948 0.83548 99.813 2 0 Median 20346000 11754000 8591800 0 0 0 0 0 0 2993500 1870800 1122700 0 0 0 15116000 8125400 6990600 2236600 1758100 478500 4374 2720 4554 22506;22507;22508;22509;22510;22511 23082;23083 23083 2 DIDPIITR QIGQVCASDVATQTRDIDPIITRLQQIKEK DVATQTRDIDPIITRLQQIKEKPSGWSQIC R D I T R L 0 1 0 2 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 8 0 941.5182 J3KMZ7;Q9H0H0 J3KMZ7 1134 1141 INTS2 Integrator complex subunit 2 yes no 2 0.014843 50.607 By MS/MS 1 0.84514 0.91539 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84514 0.91539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4111300 1906800 2204400 0 0 0 0 0 0 4111300 1906800 2204400 0 0 0 0 0 0 0 0 0 4375 1298 4555 22512 23084 23084 1 DIDPQNDLTFLR SLMHSFILKARSTVRDIDPQNDLTFLRIRS TVRDIDPQNDLTFLRIRSKKNEIMVAPDKD R D I L R I 0 1 1 3 0 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 0 0 12 0 1445.7151 Q9NP97;Q8TF09;H3BQI1;B1AKR6 Q9NP97 59 70 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 2 5.1455E-06 100.48 By MS/MS By MS/MS 1 1 0.92828 0.92199 2.522 2 Median 0.96419 0.93858 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89372 0.90569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10522000 5574200 4948200 1020400 493960 526440 0 0 0 9502000 5080200 4421700 0 0 0 0 0 0 0 0 0 4376 3482 4556 22513;22514 23085;23086;23087;23088 23088 4 DIDTLRDPGSQLR DDSDPDTSLFINVCRDIDTLRDPGSQLRAC CRDIDTLRDPGSQLRACPPGTAACLVRGHQ R D I L R A 0 2 0 3 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 13 1 1484.7583 P11717 P11717 214 226 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3 2.4621E-07 102.97 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.97716 0.97106 17.055 5 Median 0.77015 0.83024 9.9958 2 1 Median 1.2245 1.1477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97716 0.97106 NaN 1 0 Median 1.3765 1.1529 NaN 1 0 Median 34790000 16197000 18593000 13247000 7305100 5942100 16279000 6839900 9439200 0 0 0 0 0 0 4004000 1568600 2435300 1260100 483360 776710 4377 1969 4557 22515;22516;22517;22518;22519 23089;23090;23091;23092 23092 4 DIDVLNSSGK LSKMQREWYTKILMKDIDVLNSSGKMDKMR KILMKDIDVLNSSGKMDKMRLLNILMQLRK K D I G K M 0 0 1 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1046.5244 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 434 443 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.0032085 57.55 By MS/MS 1 0.85885 0.87823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85885 0.87823 NaN 1 0 Median NaN NaN NaN 0 0 Median 10198000 6451400 3746400 0 0 0 0 0 0 0 0 0 0 0 0 10198000 6451400 3746400 0 0 0 4378 167;643 4558 22520 23093 23093 1 DIEAMDPSILK LVFSFNEKLFGLLVKDIEAMDPSILKGEPA LLVKDIEAMDPSILKGEPATGKRQKIEVGL K D I L K G 1 0 0 2 0 0 1 0 0 2 1 1 1 0 1 1 0 0 0 0 0 0 11 0 1230.6166 I3L0N3;P46459;I3L0L3 I3L0N3 146 156 NSF Vesicle-fusing ATPase yes no 2 0.040515 27.742 By MS/MS 1 0.89147 0.83871 NaN 1 Median 0.89147 0.83871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4990400 2280500 2709900 4990400 2280500 2709900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4379 1272 4559 22521 23094 23094 1 DIEDVFYK CRIYVGNLPPDIRTKDIEDVFYKYGAIRDI PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG K D I Y K Y 0 0 0 2 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1027.4862 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 31 38 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.012659 54.549 By matching By matching By MS/MS By matching By MS/MS 1 2 2 1 3 1.2607 1.1389 17.771 9 Median 1.4277 1.4133 NaN 1 0 Median 1.2729 1.0898 0.094019 2 0 Median 1.135 1.0768 9.442 2 0 Median 1.2792 1.0876 NaN 1 0 Median 1.1664 1.1661 25.586 3 0 Median NaN NaN NaN 0 0 Median 27765000 12791000 14974000 764440 293970 470470 854770 340350 514420 13297000 6439000 6857600 1144500 493510 650940 11704000 5224200 6480200 0 0 0 4380 1337 4560 22522;22523;22524;22525;22526;22527;22528;22529;22530 23095;23096;23097 23097 3 DIEEHLQR REPCITPSGITYDRKDIEEHLQRVGHFDPV GITYDRKDIEEHLQRVGHFDPVTRSPLTQE K D I Q R V 0 1 0 1 0 1 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 1038.5094 Q9UNE7;H3BTA3 Q9UNE7 256 263 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.0029873 102.71 By MS/MS By MS/MS 2 1 1.1295 0.94291 33.245 3 Median NaN NaN NaN 0 0 Median 0.89502 0.73545 35.142 2 0 Median NaN NaN NaN 0 0 Median 1.2927 1.0781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7800100 3454200 4345900 0 0 0 4432200 2058300 2373900 0 0 0 3367900 1395900 1972000 0 0 0 0 0 0 4381 4342 4561 22531;22532;22533 23098;23099;23100;23101 23099 4 DIEGKLPQTEQELKEK IAASETLKERKAAIRDIEGKLPQTEQELKE IEGKLPQTEQELKEKEKELQKLTQEETNFK R D I E K E 0 0 0 1 0 2 4 1 0 1 2 3 0 0 1 0 1 0 0 0 0 0 16 2 1883.984 Q9NTJ3;E9PD53 Q9NTJ3 543 558 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.011265 24.041 By MS/MS 1 0.53847 0.64705 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53847 0.64705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9404300 5349500 4054900 0 0 0 0 0 0 9404300 5349500 4054900 0 0 0 0 0 0 0 0 0 4382 4108 4562 22534 23102;23103 23103 2 DIELEASQLDR SFEKQIEEEILHKKRDIELEASQLDRYKEL HKKRDIELEASQLDRYKELKEQVRKKVATM R D I D R Y 1 1 0 2 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1287.6307 Q8NDV3 Q8NDV3 364 374 SMC1B Structural maintenance of chromosomes protein 1B yes yes 2 0.016514 36.334 By MS/MS 1 1.6979 1.4322 NaN 1 Median NaN NaN NaN 0 0 Median 1.6979 1.4322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5237100 1895300 3341800 0 0 0 5237100 1895300 3341800 0 0 0 0 0 0 0 0 0 0 0 0 4383 3425 4563 22535 23104 23104 1 DIELQIR DLPGMTKVPVGDQPKDIELQIRELILRFIS VPVGDQPKDIELQIRELILRFISNPNSIIL K D I I R E 0 1 0 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 885.49198 O00429;F8VZ52;F8W1W3;B4DDQ3;F8VUJ9 O00429 161 167 DNM1L Dynamin-1-like protein yes no 2 0.020125 77.748 By MS/MS By MS/MS 1 1 1.1941 1.1885 52.21 2 Median 0.86813 0.82158 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6426 1.7192 NaN 1 1 Median NaN NaN NaN 0 0 Median 12754000 5964200 6790100 7962800 4148900 3813900 0 0 0 0 0 0 0 0 0 4791500 1815300 2976200 0 0 0 4384 1463 4564 22536;22537 23105;23106 23105 2 DIELSPEAQAK VDKIRTIAQAVYGAKDIELSPEAQAKIDRY YGAKDIELSPEAQAKIDRYTQQGFGNLPIC K D I A K I 2 0 0 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1199.6034 A0A087WVM4;B7ZM99;Q6UB35;Q4VXM0 A0A087WVM4 816 826 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0018837 56.563 By MS/MS By MS/MS 1 1 0.91165 0.85085 6.8312 2 Median 0.81458 0.81073 NaN 1 0 Median 1.0203 0.89296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4673400 2299200 2374200 2176300 1139900 1036400 2497100 1159300 1337800 0 0 0 0 0 0 0 0 0 0 0 0 4385 43 4565 22538;22539 23107;23108;23109 23109 3 DIELVMSQANVSR ESEEEEVDETGVEVKDIELVMSQANVSRAK VKDIELVMSQANVSRAKAVRALKNNSNDIV K D I S R A 1 1 1 1 0 1 1 0 0 1 1 0 1 0 0 2 0 0 0 2 0 0 13 0 1460.7293 F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3 F8VZJ2 101 113 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 1.2896E-08 147.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 2 1.1042 0.96171 16.134 13 Median 1.1122 1.0392 1.6428 2 0 Median 1.1501 0.95638 23.877 4 0 Median 0.96126 0.93562 7.7606 3 2 Median 1.1574 0.96559 5.4183 2 1 Median NaN NaN NaN 0 0 Median 0.94876 0.81149 24.019 2 0 Median 177750000 83487000 94263000 37095000 17869000 19226000 47454000 21364000 26089000 70565000 34207000 36358000 21107000 9336300 11771000 0 0 0 1529800 710910 818860 4386 907 4566;4567 22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552 23110;23111;23112;23113;23114;23115;23116;23117;23118;23119;23120;23121;23122;23123 23116 328 14 DIENQYETQITQIEHEVSSSGQEVQSSAK DMRQEYEQLIAKNRKDIENQYETQITQIEH HEVSSSGQEVQSSAKEVTQLRHGVQELEIE K D I A K E 1 0 1 1 0 5 5 1 1 3 0 1 0 0 0 5 2 0 1 2 0 0 29 0 3263.5066 P35527;CON__P35527;K7EQQ3 P35527 340 368 KRT9 Keratin, type I cytoskeletal 9 yes no 3 1.933E-117 187.26 By MS/MS By MS/MS By MS/MS By MS/MS 5 1 4 3 0.015532 0.016149 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.015532 0.016149 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175720000 175650000 73764 46705000 46705000 0 1702800 1702800 0 18324000 18251000 73764 0 0 0 108990000 108990000 0 0 0 0 + 4387 2242 4568 22553;22554;22555;22556;22557;22558;22559;22560;22561;22562;22563;22564;22565 23124;23125;23126;23127;23128;23129;23130;23131;23132;23133;23134;23135;23136;23137;23138 23137 15 DIENYIQDGKDDYKK NDIKEKVKNIHGYMKDIENYIQDGKDDYKK DIENYIQDGKDDYKKQKETELNKVIAQLSE K D I K K Q 0 0 1 4 0 1 1 1 0 2 0 3 0 0 0 0 0 0 2 0 0 0 15 2 1842.8636 Q92878;A0A1W2PQ90 Q92878 960 974 RAD50 DNA repair protein RAD50 yes no 3 0.0063508 26.435 By MS/MS By matching 1 1 1.1625 1.2246 2.5114 2 Median 1.1385 1.2465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.187 1.203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11922000 5764600 6157700 6345600 3133400 3212100 0 0 0 0 0 0 5576700 2631100 2945600 0 0 0 0 0 0 4388 3561 4569 22566;22567 23139 23139 1 DIEVASNPAFPQR TDHSSHFSNFNDNSRDIEVASNPAFPQRLP SRDIEVASNPAFPQRLPPQIFNSPFSLPSE R D I Q R L 2 1 1 1 0 1 1 0 0 1 0 0 0 1 2 1 0 0 0 1 0 0 13 0 1442.7154 J3QS41;P42694 J3QS41 1641 1653 HELZ Probable helicase with zinc finger domain yes no 2 0.00019593 93.111 By MS/MS 1 1.3988 1.3324 NaN 1 Median 1.3988 1.3324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5300100 1874600 3425500 5300100 1874600 3425500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4389 1355 4570 22568 23140 23140 1 DIFEGVYFPAISLYK IIFYKNGVNQGVAYKDIFEGVYFPAISLYK DIFEGVYFPAISLYKSCTVSINFGPCFKYP K D I Y K S 1 0 0 1 0 0 1 1 0 2 1 1 0 2 1 1 0 0 2 1 0 0 15 0 1760.9025 F5H8F7;Q9UBL3;H0YBF6;H0YAQ0 F5H8F7 417 431 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.0087342 31.843 By MS/MS 1 0.79855 0.81644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79855 0.81644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537000 874430 662600 0 0 0 0 0 0 1537000 874430 662600 0 0 0 0 0 0 0 0 0 4390 1048 4571 22569 23141 23141 1 DIFPYSENK IFFFGTHETAFLGPKDIFPYSENKEKYGKP AFLGPKDIFPYSENKEKYGKPNKRKGFNEG K D I N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1111.5186 O75475 O75475 57 65 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.00082669 95.741 By MS/MS By MS/MS By matching 2 3 1 1.2168 1.072 26.642 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86451 0.88575 17.351 2 0 Median 1.243 1.1128 28.856 3 0 Median NaN NaN NaN 0 0 Median 1.429 1.1945 NaN 1 0 Median 31668000 16076000 15592000 0 0 0 0 0 0 25421000 13628000 11793000 5589600 2218700 3370900 0 0 0 657490 228980 428510 4391 1674 4572 22570;22571;22572;22573;22574;22575 23142;23143;23144 23142 3 DIFPYSENKEK IFFFGTHETAFLGPKDIFPYSENKEKYGKP LGPKDIFPYSENKEKYGKPNKRKGFNEGLW K D I E K Y 0 0 1 1 0 0 2 0 0 1 0 2 0 1 1 1 0 0 1 0 0 0 11 1 1368.6561 O75475 O75475 57 67 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 0.00064962 93.598 By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 0.93923 0.98131 35.413 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.667 0.73907 17.364 3 0 Median 1.7294 1.589 20.124 4 1 Median 0.77643 0.84901 18.967 2 0 Median 1.0587 0.95173 38.463 2 0 Median 97034000 48973000 48061000 0 0 0 0 0 0 47464000 27396000 20068000 34128000 14215000 19913000 11591000 5832200 5758600 3851200 1530100 2321100 4392 1674 4573 22576;22577;22578;22579;22580;22581;22582;22583;22584;22585;22586 23145;23146;23147;23148;23149;23150 23147 6 DIGAIAQVHAENGDIIAEEQQR QLTDCQIYEVLSVIRDIGAIAQVHAENGDI VHAENGDIIAEEQQRILDLGITGPEGHVLS R D I Q R I 4 1 1 2 0 3 3 2 1 4 0 0 0 0 0 0 0 0 0 1 0 0 22 0 2376.167 Q16555;A0A1C7CYX9 Q16555 190 211 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 3 1.5358E-14 88.036 By MS/MS 1 0.71989 0.6823 NaN 1 Median 0.71989 0.6823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14178000 8344900 5832700 14178000 8344900 5832700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4393 328 4574 22587 23151;23152 23152 2 DIGAIAR MLRDSELYQVLHACKDIGAIARVHAENGEL YQVLHACKDIGAIARVHAENGELVAEGAKE K D I A R V 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 714.40244 Q9BPU6;E7EWB4 Q9BPU6 183 189 DPYSL5 Dihydropyrimidinase-related protein 5 yes no 1 0.024648 35.105 By matching By MS/MS By MS/MS By matching 1 1 6 5 0.9926 1.0507 10.949 13 Median NaN NaN NaN 0 0 Median 1.5209 1.2719 NaN 1 0 Median 0.96407 0.97677 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94653 0.95831 6.1325 6 0 Median 1.3546 1.0987 5.4591 5 0 Median 265330000 130430000 134890000 0 0 0 611450 242280 369180 3610100 1775700 1834400 0 0 0 195820000 100460000 95359000 65291000 27958000 37332000 4394 3776 4575 22588;22589;22590;22591;22592;22593;22594;22595;22596;22597;22598;22599;22600 23153;23154 23154 2 DIGEGNLSTAAAAALAAAAVK EVVESEGERKTKVERDIGEGNLSTAAAAAL LSTAAAAALAAAAVKAKHLAAVEERKIKSL R D I V K A 9 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 1 0 0 1 0 0 21 0 1883.9953 Q8TAQ2;F8VXC8 Q8TAQ2 852 872 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 2.5567E-08 53.001 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 3 3 2 2 0.95753 0.96446 15.976 12 Median 1.0748 1.043 NaN 1 0 Median 1.2181 1.1077 NaN 1 0 Median 0.8321 0.88609 4.0402 3 0 Median 1.1697 1.0586 4.4666 3 0 Median 0.80135 0.83325 9.2225 2 0 Median 0.95943 0.82269 30.598 2 0 Median 50342000 25608000 24734000 354000 115280 238720 167780 82185 85596 42330000 21994000 20337000 2977800 1349300 1628500 4065100 1881700 2183400 446780 185650 261120 4395 3455 4576 22601;22602;22603;22604;22605;22606;22607;22608;22609;22610;22611;22612 23155;23156;23157;23158;23159;23160 23156 6 DIGFIKLD YGLNMCRQCFRQYAKDIGFIKLD_______ CFRQYAKDIGFIKLD_______________ K D I L D - 0 0 0 2 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 1 919.50148 P62273;A0A087WTT6 P62273 49 56 RPS29 40S ribosomal protein S29 yes no 1 0.047366 16.144 By matching By matching By MS/MS 1 2 1 1.1314 0.96749 5.9854 4 Median 1.1175 1.0178 NaN 1 0 Median 1.1625 0.96749 1.2461 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83496 0.88251 NaN 1 0 Median NaN NaN NaN 0 0 Median 33174000 14952000 18221000 9790200 4422400 5367800 21413000 9608200 11805000 0 0 0 0 0 0 1970500 921670 1048800 0 0 0 4396 2579 4577 22613;22614;22615;22616 23161 23161 0 DIGNQLHMLTNR GDQTSTPKTKELSEKDIGNQLHMLTNRHDK SEKDIGNQLHMLTNRHDKFLDTLREVKTGA K D I N R H 0 1 2 1 0 1 0 1 1 1 2 0 1 0 0 0 1 0 0 0 0 0 12 0 1410.7038 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2565 2576 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00015885 73.848 By MS/MS By matching 1 1 1.0027 0.9665 5.0779 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93503 1.0018 NaN 1 0 Median 1.0754 0.93242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5769400 3149300 2620100 0 0 0 0 0 0 5612900 3074100 2538800 156490 75155 81337 0 0 0 0 0 0 4397 991 4578 22617;22618 23162;23163 23162 2 DIGTPEAWR ATQPVLKQRRRLTMKDIGTPEAWRVMMSLK RRLTMKDIGTPEAWRVMMSLKSGLLAESTW K D I W R V 1 1 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 1 0 0 0 0 9 0 1043.5036 O14497;H0Y488;A0A1B0GTU5;H0YEW5 O14497 1663 1671 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.00082366 95.909 By MS/MS By MS/MS By matching 2 2 1 0.79464 0.79973 13.861 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78592 0.85718 1.2641 2 0 Median 0.73095 0.70742 17.345 2 1 Median NaN NaN NaN 0 0 Median 0.80455 0.6974 NaN 1 0 Median 13220000 6929700 6289800 0 0 0 0 0 0 11403000 6077700 5325700 1183500 646390 537120 0 0 0 632740 205680 427060 4398 1480 4579 22619;22620;22621;22622;22623 23164;23165;23166 23165 3 DIHDDQDYLHSLGK DLVNMGISVVSYTLKDIHDDQDYLHSLGKA KDIHDDQDYLHSLGKARTAQVQKDARIGEA K D I G K A 0 0 0 4 0 1 0 1 2 1 2 1 0 0 0 1 0 0 1 0 0 0 14 0 1654.7587 O75955;A0A140T9R1;A2AB10;A2AB09;A2AB12;A0A140T9X0;A0A0G2JJQ6;A2AB13;A2AB11;A0A140T959;A0A140T9C3;A0A140T910;A0A140T957;A0A140T9B1 O75955 153 166 FLOT1 Flotillin-1 yes no 3 0.00020064 62.287 By matching By matching By MS/MS 2 1 2 0.96808 0.94415 30.124 5 Median 0.79401 0.76397 29.946 2 0 Median 1.4481 1.2539 NaN 1 0 Median 1.0929 1.0835 26.243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36011000 17979000 18032000 12602000 6988300 5613700 1481900 721680 760190 21927000 10269000 11659000 0 0 0 0 0 0 0 0 0 4399 1712 4580 22624;22625;22626;22627;22628 23167;23168 23167 2 DIHELFVPENKLDHVR ELLQEQNIVPYTIIKDIHELFVPENKLDHV IHELFVPENKLDHVRAEAETLPSLSITKLD K D I V R A 0 1 1 2 0 0 2 0 2 1 2 1 0 1 1 0 0 0 0 2 0 0 16 1 1960.0167 O95340 O95340 223 238 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 4 0.021595 19.297 By MS/MS 1 1.5767 1.5867 NaN 1 Median 1.5767 1.5867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4098100 1374900 2723200 4098100 1374900 2723200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4400 1765 4581 22629 23169 23169 1 DIHMTPSTDFYKK ALKPREEPNHRSSAKDIHMTPSTDFYKKLA AKDIHMTPSTDFYKKLALDCSGQQVAVDLF K D I K K L 0 0 0 2 0 0 0 0 1 1 0 2 1 1 1 1 2 0 1 0 0 0 13 1 1581.7497 O95486 O95486 663 675 SEC24A Protein transport protein Sec24A yes yes 3 0.056491 11.44 By MS/MS 1 0.70847 0.74944 NaN 1 Median 0.70847 0.74944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1987800 1008200 979540 1987800 1008200 979540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4401 1777 4582 22630 23170 23170 1 DIHVPPR AADCWGIRCLRYEIKDIHVPPRVKESMQMQ RCLRYEIKDIHVPPRVKESMQMQVEAERRK K D I P R V 0 1 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 1 0 0 7 0 832.45554 Q9UJZ1;A0A087WYB4 Q9UJZ1 179 185 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.040961 44.611 By matching By MS/MS 1 1 0.98563 0.91941 15.844 2 Median 0.81829 0.82197 NaN 1 0 Median 1.1872 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1006200 477700 528460 134220 65701 68521 871940 412000 459940 0 0 0 0 0 0 0 0 0 0 0 0 4402 4304 4583 22631;22632 23171 23171 1 DIIALNPLYR EEVKALTAEIVKTIRDIIALNPLYRESVLQ VKTIRDIIALNPLYRESVLQMMQAGQRVVD R D I Y R E 1 1 1 1 0 0 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1186.671 K7EKE6;P36776;K7EJE8 K7EKE6 188 197 LONP1 Lon protease homolog, mitochondrial yes no 2 0.00035038 94.302 By MS/MS By MS/MS By MS/MS 2 1 1 0.99866 0.92274 20.905 4 Median 0.81565 0.80887 8.1789 2 0 Median 1.1704 0.99348 NaN 1 1 Median 1.1641 1.2394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13363000 6178200 7184500 2710300 1543400 1166900 3854200 1679700 2174500 6798200 2955100 3843100 0 0 0 0 0 0 0 0 0 4403 1370 4584 22633;22634;22635;22636 23172;23173;23174 23172 3 DIICQIAYAR ______________________________ RVTNRDIICQIAYARIEGDMIVCAAYAHEL R D I A R I 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1221.6176 A0A2R8Y6J3;P46777;Q5T7N0;A0A2R8Y4A2 A0A2R8Y6J3 9 18 RPL5 60S ribosomal protein L5 yes no 2 0.00037295 87.616 By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.0925 0.92393 40.071 6 Median 1.1691 1.1033 NaN 1 0 Median 1.0504 0.91141 12.007 2 0 Median 1.1867 1.1756 NaN 1 0 Median 1.0208 0.86039 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46536 0.39033 NaN 1 0 Median 26764000 11810000 14954000 5384600 2221400 3163200 15059000 6695800 8363200 5304600 2392600 2911900 160770 69082 91691 0 0 0 855250 431430 423810 4404 375 4585 22637;22638;22639;22640;22641;22642 23175;23176;23177 23177 3 DIIDKQHTEQEASYGR MVEKALLYRTVATGRDIIDKQHTEQEASYG IIDKQHTEQEASYGRDAFAKAIYERLFCWI R D I G R D 1 1 0 2 0 2 2 1 1 2 0 1 0 0 0 1 1 0 1 0 0 0 16 1 1888.8915 K7EIG7;O94832;J3QRN6;J3KRL0 K7EIG7 237 252 MYO1D Unconventional myosin-Id yes no 3 0.0011728 35.329 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.92357 1.0356 32.945 4 Median 0.77363 0.80105 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88615 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96258 1.0639 NaN 1 0 Median 1.995 1.7517 NaN 1 0 Median 7044000 3277400 3766600 1634500 858840 775700 0 0 0 1969600 851440 1118100 0 0 0 2781300 1349700 1431600 658580 217380 441200 4405 1359 4586 22643;22644;22645;22646 23178;23179 23179 2 DIIDTPMDFATVR PFRQPVDLLEYPDYRDIIDTPMDFATVRET YRDIIDTPMDFATVRETLEAGNYESPMELC R D I V R E 1 1 0 3 0 0 0 0 0 2 0 0 1 1 1 0 2 0 0 1 0 0 13 0 1492.7232 Q8WWQ0 Q8WWQ0 1355 1367 PHIP PH-interacting protein yes yes 2 0.032002 44.309 By MS/MS 1 1.1969 1.277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1969 1.277 NaN 1 1 Median NaN NaN NaN 0 0 Median 1124500 498150 626330 0 0 0 0 0 0 0 0 0 0 0 0 1124500 498150 626330 0 0 0 4406 3512 4587 22647 23180 23180 1 DIIFAIK PYAKILEDNSIPQVKDIIFAIKKTLNI___ DNSIPQVKDIIFAIKKTLNI__________ K D I I K K 1 0 0 1 0 0 0 0 0 3 0 1 0 1 0 0 0 0 0 0 0 0 7 0 818.49019 P11177 P11177 348 354 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 0.033693 48.174 By MS/MS By matching By matching By matching 1 2 2 2 1.0942 1.0539 22.412 7 Median 1.0113 0.951 NaN 1 0 Median 0.99358 0.84273 43.754 2 0 Median 1.026 1.0622 1.1111 2 0 Median 1.2768 1.1265 11.506 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11851000 5824600 6026500 6528400 3440100 3088200 4175900 1806500 2369400 1036800 532400 504360 110090 45503 64585 0 0 0 0 0 0 4407 1954 4588 22648;22649;22650;22651;22652;22653;22654 23181;23182 23181 2 DIIFAIKK PYAKILEDNSIPQVKDIIFAIKKTLNI___ NSIPQVKDIIFAIKKTLNI___________ K D I K K T 1 0 0 1 0 0 0 0 0 3 0 2 0 1 0 0 0 0 0 0 0 0 8 1 946.58515 P11177 P11177 348 355 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 0.016845 56.122 By MS/MS By MS/MS 2 2 1.2654 1.1401 15.673 4 Median 1.0368 0.98658 6.5215 2 0 Median 1.6036 1.2823 2.6789 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75611000 34801000 40811000 64056000 30164000 33892000 11555000 4637100 6918100 0 0 0 0 0 0 0 0 0 0 0 0 4408 1954 4589 22655;22656;22657;22658 23183;23184 23183 2 DIIGLAETGSGK TKIQIEAIPLALQGRDIIGLAETGSGKTGA QGRDIIGLAETGSGKTGAFALPILNALLET R D I G K T 1 0 0 1 0 0 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1159.6085 Q9H0S4 Q9H0S4 63 74 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 2.6447E-05 91.549 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4409 3928 4590 22659 23185 23185 1 DIIHDPGR VDFAERHGYIKGIVKDIIHDPGRGAPLAKV YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K D I G R G 0 1 0 2 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 8 0 921.46683 P62917;E9PKU4;E9PKZ0;G3V1A1 P62917 47 54 RPL8 60S ribosomal protein L8 yes no 2 0.028877 60.682 By MS/MS By MS/MS 1 1 1.3877 1.223 4.2773 2 Median 1.3497 1.2606 NaN 1 1 Median 1.4268 1.1866 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19123000 7006800 12117000 8383000 3261000 5122000 10740000 3745700 6994600 0 0 0 0 0 0 0 0 0 0 0 0 4410 2610 4591 22660;22661 23186;23187 23187 2 DIIHFFR LRFSQKFVDRVANPKDIIHFFRHREQKEKT VDRVANPKDIIHFFRHREQKEKTGEEINFG K D I F R H 0 1 0 1 0 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 7 0 946.50249 P49959;F8W7U8 P49959 394 400 MRE11A Double-strand break repair protein MRE11A yes no 2 0.027601 52.683 By MS/MS By MS/MS By matching 1 2 2 1.0776 1.1 27.264 5 Median 1.1098 1.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8041 0.83853 44.796 2 1 Median 1.2164 1.06 15.069 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19273000 11671000 7601800 1576400 776780 799630 0 0 0 16693000 10459000 6234000 1003600 435450 568180 0 0 0 0 0 0 4411 2407 4592 22662;22663;22664;22665;22666 23188;23189;23190;23191 23189 4 DIIHNPQALSPQFTGILQLLQSR LQNVARIPEFELLWKDIIHNPQALSPQFTG LSPQFTGILQLLQSRTSRKFLACRLTPDME K D I S R T 1 1 1 1 0 4 0 1 1 3 4 0 0 1 2 2 1 0 0 0 0 0 23 0 2588.4075 Q68E01;A0A096LNW8 Q68E01 274 296 INTS3 Integrator complex subunit 3 yes no 3 0.061447 6.8749 By MS/MS 2 0.6686 0.70526 18.571 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6686 0.70526 18.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 686500 427670 258830 0 0 0 0 0 0 686500 427670 258830 0 0 0 0 0 0 0 0 0 4412 3126 4593 22667;22668 23192 23192 1 DIINEEEVQFLK GDAFPELKKDPDMVKDIINEEEVQFLKTLS MVKDIINEEEVQFLKTLSRGRRILDRKIQS K D I L K T 0 0 1 1 0 1 3 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1475.7508 P49588 P49588 373 384 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0023981 55.567 By MS/MS By MS/MS 1 2 1.0292 0.96368 4.3336 3 Median 1.0029 0.99008 NaN 1 0 Median 1.0804 0.93623 4.0877 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11636000 5171700 6464400 3404800 1529900 1874900 8231300 3641800 4589500 0 0 0 0 0 0 0 0 0 0 0 0 4413 2385 4594 22669;22670;22671 23193;23194;23195;23196 23193 4 DIINMLFYHDR IDNGFFSPKQPDLFKDIINMLFYHDRFKVF DLFKDIINMLFYHDRFKVFADYEAYVKCQD K D I D R F 0 1 1 2 0 0 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 0 11 0 1435.6918 P06737;E9PK47 P06737 761 771 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.0001148 145.34 By MS/MS By matching 1 1 1.1893 1.1274 5.2657 2 Median NaN NaN NaN 0 0 Median 1.2557 1.0862 NaN 1 0 Median 1.1265 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32410000 14116000 18294000 0 0 0 32097000 13957000 18140000 313000 159400 153600 0 0 0 0 0 0 0 0 0 4414 1874 4595 22672;22673 23197;23198 23198 2 DIISDTSGDFR INRVYKEMYKTDLEKDIISDTSGDFRKLMV DLEKDIISDTSGDFRKLMVALAKGRRAEDG K D I F R K 0 1 0 3 0 0 0 1 0 2 0 0 0 1 0 2 1 0 0 0 0 0 11 0 1224.5622 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 158 168 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.00011468 130.96 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.2471 1.0615 16.114 6 Median 1.3681 1.362 NaN 1 0 Median 1.2575 1.0792 NaN 1 0 Median 1.2623 1.2241 NaN 1 0 Median 1.2071 1.0133 4.2361 2 0 Median NaN NaN NaN 0 0 Median 1.0508 0.86284 NaN 1 0 Median 64126000 26905000 37221000 3607000 1562200 2044800 2168400 937900 1230500 47241000 19650000 27591000 10802000 4602100 6199900 0 0 0 307260 152810 154450 4415 1885 4596 22674;22675;22676;22677;22678;22679 23199;23200;23201;23202;23203;23204;23205 23200 7 DIISDTSGDFRK INRVYKEMYKTDLEKDIISDTSGDFRKLMV LEKDIISDTSGDFRKLMVALAKGRRAEDGS K D I R K L 0 1 0 3 0 0 0 1 0 2 0 1 0 1 0 2 1 0 0 0 0 0 12 1 1352.6572 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 158 169 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3 2.638E-09 173.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 4 2 2 1.2608 1.1647 25.272 17 Median 2.2915 2.456 60.336 3 0 Plateau 1.3073 1.1927 10.991 4 0 Median 1.0824 1.1676 7.4409 2 0 Median 1.2631 1.1157 7.0646 4 0 Median 1.4361 1.5553 8.7058 2 0 Median 1.1989 1.0773 4.4289 2 0 Median 343430000 155150000 188280000 45448000 18931000 26517000 51016000 22615000 28401000 161150000 76849000 84300000 70550000 30845000 39705000 9581800 3624800 5956900 5682200 2281500 3400700 4416 1885 4597 22680;22681;22682;22683;22684;22685;22686;22687;22688;22689;22690;22691;22692;22693;22694;22695;22696 23206;23207;23208;23209;23210;23211;23212;23213;23214;23215;23216;23217;23218;23219;23220;23221;23222;23223;23224;23225;23226;23227;23228 23212 23 DIISIAEDEDLR HLKKPGGFDISLFYRDIISIAEDEDLRVHF FYRDIISIAEDEDLRVHFEESSKLEDLLRK R D I L R V 1 1 0 3 0 0 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1387.6831 P12956;B1AHC9 P12956 219 230 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 4.5969E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.68432 0.61017 174.22 6 Median 0.82385 0.78202 NaN 1 0 Median 1.1006 0.94973 NaN 1 0 Median 2.3524 2.5404 306.03 2 1 Median 0.56842 0.47609 NaN 1 1 Median 0.1425 0.14781 NaN 1 1 Median NaN NaN NaN 0 0 Median 79296000 39557000 39740000 12379000 5926400 6452800 49659000 22074000 27585000 6663200 3100500 3562600 4488300 2831200 1657200 6106400 5624400 482080 0 0 0 4417 1985 4598 22697;22698;22699;22700;22701;22702 23229;23230;23231;23232;23233;23234;23235;23236 23234 8 DIIVIGNDITYR AWKMTFKSPEYPEGRDIIVIGNDITYRIGS EGRDIIVIGNDITYRIGSFGPQEDLLFLRA R D I Y R I 0 1 1 2 0 0 0 1 0 4 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1390.7456 Q13085;Q59FY4 Q13085 1676 1687 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.041008 45.161 By MS/MS 1 1.7207 1.4731 NaN 1 Median NaN NaN NaN 0 0 Median 1.7207 1.4731 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 902240 263070 639170 0 0 0 902240 263070 639170 0 0 0 0 0 0 0 0 0 0 0 0 4418 2784 4599 22703 23237 23237 1 DIKDTTVGTLSQR GAEEAEEVGVEHLLRDIKDTTVGTLSQRIT LRDIKDTTVGTLSQRITNQVHGLKGLNSKL R D I Q R I 0 1 0 2 0 1 0 1 0 1 1 1 0 0 0 1 3 0 0 1 0 0 13 1 1432.7522 P51665 P51665 178 190 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 2;3 3.8893E-10 180.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1 0.90293 0.87074 34.887 9 Median 0.85648 0.88467 41.736 4 0 Median 1.0608 0.9958 24.453 2 1 Median 0.58565 0.66622 NaN 1 1 Median 0.98242 0.86003 NaN 1 0 Median 1.2716 1.3777 NaN 1 1 Median NaN NaN NaN 0 0 Median 114540000 61288000 53250000 92218000 49915000 42303000 7931000 3806100 4124900 8217100 4557600 3659600 1848300 853080 995250 4323500 2156000 2167500 0 0 0 4419 2440 4600 22704;22705;22706;22707;22708;22709;22710;22711;22712 23238;23239;23240;23241;23242;23243;23244;23245;23246;23247 23239 10 DIKPIIKDEK SEGADQKMSSFKEEKDIKPIIKDEKGRVGS FKEEKDIKPIIKDEKGRVGSGSGRNLWVSG K D I E K G 0 0 0 2 0 0 1 0 0 3 0 3 0 0 1 0 0 0 0 0 0 0 10 2 1197.6969 Q14151 Q14151 389 398 SAFB2 Scaffold attachment factor B2 yes yes 3 0.00016752 102.53 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 2 1.0532 1.0999 17.985 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91534 1.0999 NaN 1 0 Median 1.1355 1.1628 NaN 1 0 Median 1.038 1.0943 22.198 5 0 Median 1.1845 1.0954 24.26 2 0 Median 13941000 6785600 7155100 0 0 0 0 0 0 1094000 542950 551010 1175800 525330 650500 10505000 5170800 5334700 1165500 546500 618970 4420 2859 4601 22713;22714;22715;22716;22717;22718;22719;22720;22721 23248;23249;23250;23251;23252;23253;23254;23255 23254 8 DILADLIPK VLAARHASASSTNLKDILADLIPKEQARIK SSTNLKDILADLIPKEQARIKTFRQQHGKT K D I P K E 1 0 0 2 0 0 0 0 0 2 2 1 0 0 1 0 0 0 0 0 0 0 9 0 996.58555 O75390;B4DJV2;F8W4S1;F8VTT8;F8VR34;F8VU34;F8W0J2;F8VWQ5;F8W031;F8VP03 O75390 35 43 CS Citrate synthase, mitochondrial;Citrate synthase no no 2 0.031814 35.88 By matching By matching By MS/MS 1 2 1 0.99157 0.8979 10.375 4 Median 0.78388 0.76189 NaN 1 0 Median 1.1105 0.94368 4.2045 2 0 Median 0.91455 0.88012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48369000 24052000 24317000 1760000 909000 851030 27853000 13375000 14478000 18755000 9767200 8988200 0 0 0 0 0 0 0 0 0 4421 594;1078 4602 22722;22723;22724;22725 23256;23257 23256 2 DILAPNLQWHAGR NSQGQFPSYLETVTKDILAPNLQWHAGRTA TKDILAPNLQWHAGRTAAAIRTAAVSCLWA K D I G R T 2 1 1 1 0 1 0 1 1 1 2 0 0 0 1 0 0 1 0 0 0 0 13 0 1489.779 Q86Y56;H0Y650;E9PGY2 Q86Y56 656 668 DNAAF5 Dynein assembly factor 5, axonemal yes no 3 0.00035013 56.205 By MS/MS 1 0.76119 0.73519 NaN 1 Median 0.76119 0.73519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3854700 2138900 1715800 3854700 2138900 1715800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4422 3305 4603 22726 23258;23259 23259 2 DILEGVLR LSEIRSLRMPPDVIRDILEGVLRLMGIFDT MPPDVIRDILEGVLRLMGIFDTSWVSMKSF R D I L R L 0 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 913.52328 Q8NCM8 Q8NCM8 3015 3022 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.031031 38.792 By MS/MS 2 1.5553 1.3675 14.685 2 Median NaN NaN NaN 0 0 Median 1.5553 1.3675 14.685 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 794330 341410 452930 0 0 0 794330 341410 452930 0 0 0 0 0 0 0 0 0 0 0 0 4423 3418 4604 22727;22728 23260 23260 1 DILEHHLQNNK SASINSLLERYDTYRDILEHHLQNNKFRIT DTYRDILEHHLQNNKFRITSDFSSEEDRSS R D I N K F 0 0 2 1 0 1 1 0 2 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1359.6895 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1124 1134 SYNE2 Nesprin-2 yes no 3 0.040663 33.088 By MS/MS 1 0.95798 0.89426 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95798 0.89426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 734650 355460 379200 0 0 0 0 0 0 0 0 0 734650 355460 379200 0 0 0 0 0 0 4424 3521 4605 22729 23261 23261 0 DILELGGPEGDAASGTISK ______________________________ LGGPEGDAASGTISKKDIINPDKKKSKKSS R D I S K K 2 0 0 2 0 0 2 4 0 2 2 1 0 0 1 2 1 0 0 0 0 0 19 0 1828.9054 Q9NPF5;Q5TG40;Q5TG38;Q5TG39;Q5TG36 Q9NPF5 9 27 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 5.9304E-18 126.63 By MS/MS 1 0.74221 0.72035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74221 0.72035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14479000 7847300 6631900 0 0 0 0 0 0 14479000 7847300 6631900 0 0 0 0 0 0 0 0 0 4425 4050 4606 22730 23262;23263 23263 2 DILETHLR VCVNLMKALKMSPYKDILETHLREKITAQS LKMSPYKDILETHLREKITAQSIEELCAVN K D I L R E 0 1 0 1 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 995.53999 P78527 P78527 1413 1420 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0022962 138.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1.2757 1.0186 24.73 7 Median 0.76766 0.74716 NaN 1 0 Median 1.2757 1.0186 NaN 1 0 Median 0.85147 0.88927 NaN 1 0 Median 1.3969 1.2186 NaN 1 0 Median 0.85353 0.89651 NaN 1 0 Median 1.6997 1.4112 3.0677 2 2 Median 145030000 69382000 75650000 19216000 10566000 8649500 53979000 24118000 29861000 41433000 22204000 19229000 19129000 7966700 11162000 3802400 1775300 2027100 7473000 2751700 4721400 4426 2647 4607 22731;22732;22733;22734;22735;22736;22737 23264;23265;23266;23267;23268;23269;23270;23271;23272 23264 9 DILHATFEESLDKTSHSVGR NTKVKGPFVTWQVVRDILHATFEESLDKTS TFEESLDKTSHSVGRRARYIVKNPQAYLNY R D I G R R 1 1 0 2 0 0 2 1 2 1 2 1 0 1 0 3 2 0 0 1 0 0 20 1 2241.1026 Q12789;H3BRD0 Q12789 1299 1318 GTF3C1 General transcription factor 3C polypeptide 1 yes no 4 3.0219E-07 51.348 By MS/MS 1 1.0539 1.2639 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0539 1.2639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5145700 2383300 2762400 0 0 0 0 0 0 5145700 2383300 2762400 0 0 0 0 0 0 0 0 0 4427 2758 4608 22738 23273;23274 23273 2 DILIDPIR LFSATFRKKIEKLARDILIDPIRVVQGDIG KIEKLARDILIDPIRVVQGDIGEANEDVTQ R D I I R V 0 1 0 2 0 0 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 0 8 0 953.55458 Q86XP3;A0A0A0MSJ0 Q86XP3 451 458 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.011256 77.674 By matching By MS/MS By matching By MS/MS 2 2 1 2 0.7371 0.74943 11.195 5 Median 0.82981 0.83109 17.734 2 0 Median NaN NaN NaN 0 0 Median 0.7371 0.81086 NaN 1 0 Median 0.8766 0.74943 NaN 1 0 Median 0.68318 0.71404 NaN 1 0 Median NaN NaN NaN 0 0 Median 7843000 4461100 3381800 1736900 857720 879150 0 0 0 4129000 2554400 1574600 729010 351880 377140 1248000 697150 550890 0 0 0 4428 3302 4609 22739;22740;22741;22742;22743;22744;22745 23275;23276;23277;23278;23279 23275 5 DILIQYDR YYQKYVDEASKKEIKDILIQYDRTLLVADP ASKKEIKDILIQYDRTLLVADPRRCESKKF K D I D R T 0 1 0 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1034.5397 P62249;M0R210 P62249 110 117 RPS16 40S ribosomal protein S16 yes no 2 7.6283E-05 112.17 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.312 1.0804 30.629 6 Median 1.13 1.0797 NaN 1 1 Median 0.91615 0.81552 33.604 2 0 Median 1.6569 1.6764 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4632 1.121 5.1237 2 0 Median 64622000 27720000 36902000 29023000 13038000 15984000 13139000 6033700 7105000 18462000 7222400 11239000 0 0 0 0 0 0 3999400 1425900 2573400 4429 2574 4610 22746;22747;22748;22749;22750;22751 23280;23281;23282;23283;23284;23285;23286 23281 7 DILKEMFPYEASTPTGISASCR RAEVGEKTEERRVERDILKEMFPYEASTPT PYEASTPTGISASCRRPIKGAAGRPLELSD R D I C R R 2 1 0 1 1 0 2 1 0 2 1 1 1 1 2 3 2 0 1 0 0 0 22 1 2472.1665 P42167;G5E972;H0YJH7 P42167 343 364 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 0.030411 13.455 By MS/MS 1 0.71992 0.74601 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71992 0.74601 NaN 1 0 Median NaN NaN NaN 0 0 Median 1048700 543130 505530 0 0 0 0 0 0 0 0 0 0 0 0 1048700 543130 505530 0 0 0 4430 2307 4611 22752 23287 23287 1 DILLQGLK KLLDYTEKPLYENLRDILLQGLKAIGSKDD PLYENLRDILLQGLKAIGSKDDGKLDLSVV R D I L K A 0 0 0 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 898.54877 Q99986;H0YJ50;H0YJJ9 Q99986 322 329 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0065188 70.912 By MS/MS By MS/MS By matching By matching 2 2 1 4 1.0817 0.92961 7.3254 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97323 0.98374 8.0039 2 0 Median 1.1944 1.0438 1.8087 2 0 Median 1.0028 0.96149 NaN 1 0 Median 1.0831 0.89947 2.7711 4 0 Median 71042000 34851000 36191000 0 0 0 0 0 0 57767000 28783000 28984000 9348000 4229300 5118800 1886200 897960 988220 2040700 940080 1100700 4431 3775 4612 22753;22754;22755;22756;22757;22758;22759;22760;22761 23288;23289;23290;23291;23292;23293 23289 6 DILLQQQQQLGHGGPEAAPR AAASAAAKPPPLSAKDILLQQQQQLGHGGP QQQQLGHGGPEAAPRAPQALERYPLAAAAE K D I P R A 2 1 0 1 0 5 1 3 1 1 3 0 0 0 2 0 0 0 0 0 0 0 20 0 2155.1134 Q7Z5L9 Q7Z5L9 90 109 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 3 4.21E-14 101.53 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.71881 0.66194 10.019 4 Median 0.62883 0.59519 NaN 1 0 Median 0.85267 0.73799 NaN 1 0 Median 0.69259 0.70227 NaN 1 0 Median 0.74602 0.62394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39477000 22721000 16757000 17015000 10207000 6807700 2100600 987940 1112700 17337000 9824800 7512600 3024800 1701300 1323500 0 0 0 0 0 0 4432 3250 4613 22762;22763;22764;22765 23294;23295;23296;23297;23298;23299 23297 6 DILLVNDHLLNFVR IRHDVIVSIVTAAKKDILLVNDHLLNFVRE KDILLVNDHLLNFVRERTLDKRWRVRKEAM K D I V R E 0 1 2 2 0 0 0 0 1 1 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1679.9359 Q9NTI5 Q9NTI5 381 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 0.0074719 35.959 By matching By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.0041 0.9723 18.589 7 Median 0.82016 0.80646 NaN 1 0 Median 1.4766 1.2321 NaN 1 0 Median 0.94343 1.0282 7.9017 2 0 Median 1.5519 1.3491 NaN 1 0 Median 0.86781 0.87233 NaN 1 0 Median 1.1079 0.93557 NaN 1 0 Median 5546900 2770400 2776500 149420 77985 71438 1209800 507180 702660 3881300 2035900 1845400 84181 29769 54412 157620 90059 67565 64542 29529 35013 4433 4107 4614 22766;22767;22768;22769;22770;22771;22772 23300;23301;23302 23301 3 DILMYMDR NQAWNDHQTAMVMIRDILMYMDRVYVQQNN TAMVMIRDILMYMDRVYVQQNNVENVYNLG R D I D R V 0 1 0 2 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 8 0 1055.478 Q13618;H7C1L6 Q13618 121 128 CUL3 Cullin-3 yes no 2 0.022207 45.081 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2552 1.1281 9.5993 4 Median 1.0828 1.0556 NaN 1 0 Median 1.3298 1.1803 NaN 1 0 Median 1.2155 1.3023 NaN 1 0 Median 1.2962 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6025300 2721500 3303800 3026500 1410900 1615600 1174800 546260 628540 1635200 681100 954080 188860 83259 105600 0 0 0 0 0 0 4434 2831 4615 22773;22774;22775;22776 23303;23304;23305 23304 3 DILPCLDGYLK WSIYIDRHVMQPYYKDILPCLDGYLKTSAL PYYKDILPCLDGYLKTSALSDETKNNWEVS K D I L K T 0 0 0 2 1 0 0 1 0 1 3 1 0 0 1 0 0 0 1 0 0 0 11 0 1305.6639 P78527 P78527 791 801 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.036407 46.891 By MS/MS 2 1.0862 0.95864 24.31 2 Median NaN NaN NaN 0 0 Median 1.0862 0.95864 24.31 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12717000 5703600 7013100 0 0 0 12717000 5703600 7013100 0 0 0 0 0 0 0 0 0 0 0 0 4435 2647 4616 22777;22778 23306;23307 23307 2 DILQDVHDK PQDLIQAEDRQLIIRDILQDVHDKILDDEA RQLIIRDILQDVHDKILDDEAAQELMPVVA R D I D K I 0 0 0 3 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1081.5404 Q92621 Q92621 1313 1321 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00088636 92.439 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.4397 1.287 19.542 4 Median NaN NaN NaN 0 0 Median 1.4695 1.3056 NaN 1 0 Median 1.0042 1.1026 NaN 1 0 Median 1.4104 1.2686 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0491 1.7553 NaN 1 0 Median 67993000 32377000 35617000 0 0 0 2923200 1348700 1574500 51887000 26007000 25880000 7868400 3335400 4533000 0 0 0 5315100 1685700 3629300 4436 3547 4617 22779;22780;22781;22782 23308;23309;23310;23311 23308 4 DILSFDK SSKSQDRKSESKEKRDILSFDKIKEQRERE KSESKEKRDILSFDKIKEQRERERQRQRER R D I D K I 0 0 0 2 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 836.42798 Q14151 Q14151 610 616 SAFB2 Scaffold attachment factor B2 yes yes 2 0.053242 38.792 By matching By matching By MS/MS By matching 1 1 3 1 1.1514 1.0916 13.44 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98745 1.052 NaN 1 0 Median 1.1254 0.98437 NaN 1 0 Median 1.1781 1.1385 13.791 3 0 Median 1.2184 1.0397 NaN 1 0 Median 6485100 2979800 3505300 0 0 0 0 0 0 961760 515700 446060 139970 64372 75598 5192500 2314400 2878100 190860 85342 105520 4437 2859 4618 22783;22784;22785;22786;22787;22788 23312;23313 23312 2 DILSQLGIKK LRLPRFSISSHYQLKDILSQLGIKKIFTSD HYQLKDILSQLGIKKIFTSDAGFSGITDDH K D I K K I 0 0 0 1 0 1 0 1 0 2 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1113.6758 CON__A2I7N3;CON__REFSEQ:XP_001252647 CON__A2I7N3 322 331 no no 2 0.040813 44.349 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2830100 2830100 0 2830100 2830100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4438 733;796 4619 22789 23314 23314 1 DILVATDVAGR EQREFALSNLKAGAKDILVATDVAGRGIDI AGAKDILVATDVAGRGIDIQDVSMVVNYDM K D I G R G 2 1 0 2 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 Q9BUQ8 Q9BUQ8 716 726 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS 1 2 3 1.0091 0.93046 13.614 6 Median 0.83247 0.80279 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81372 0.84244 11.286 2 0 Median 1.1995 1.109 7.8149 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52162000 26529000 25634000 8783900 4718500 4065400 0 0 0 35352000 18236000 17115000 8026500 3573700 4452800 0 0 0 0 0 0 4439 3842 4620 22790;22791;22792;22793;22794;22795 23315;23316;23317;23318;23319;23320 23315 6 DILVEVNHPFIVK ATLKVRDRVRTKMERDILVEVNHPFIVKLH ERDILVEVNHPFIVKLHYAFQTEGKLYLIL R D I V K L 0 0 1 1 0 0 1 0 1 2 1 1 0 1 1 0 0 0 0 3 0 0 13 0 1521.8555 B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32;A0A2R8Y7S9 B1AXG1 91 103 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 yes no 2;3 3.4514E-05 91.584 By MS/MS By matching 2 3 0.81506 0.81296 24.867 5 Median 0.83806 0.81474 0.31075 2 0 Median 0.63811 0.54827 30.806 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13000000 7147100 5853100 6199000 3243100 2955900 6801200 3904000 2897200 0 0 0 0 0 0 0 0 0 0 0 0 4440 581 4621 22796;22797;22798;22799;22800 23321;23322;23323 23321 3 DIMEIEGEPAPDHR AEHQVPVEKLQKVARDIMEIEGEPAPDHRH RDIMEIEGEPAPDHRHVQETTDSILSHFQS R D I H R H 1 1 0 2 0 0 3 1 1 2 0 0 1 0 2 0 0 0 0 0 0 0 14 0 1607.725 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4062 4075 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 3.7304E-15 139.86 By MS/MS 1 0.78579 0.78531 NaN 1 Median 0.78579 0.78531 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5625900 3199600 2426300 5625900 3199600 2426300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4441 1220 4622 22801 23324 23324 1 DIMLATGK GAQLCTVYYASLNFRDIMLATGKLSPDAIP YASLNFRDIMLATGKLSPDAIPGKWTSQDS R D I G K L 1 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 8 0 847.44734 P49327;A0A0U1RQF0 P49327 1575 1582 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.010149 80.229 By MS/MS 2 1.3786 1.222 NaN 1 Median NaN NaN NaN 0 0 Median 1.3786 1.222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7480300 3676800 3803500 0 0 0 7480300 3676800 3803500 0 0 0 0 0 0 0 0 0 0 0 0 4442 2377 4623 22802;22803 23325;23326 23325 2 DINAVAASLR AAFAVKLFKSWINEKDINAVAASLRKVSMD WINEKDINAVAASLRKVSMDNRLMELFPAN K D I L R K 3 1 1 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1028.5615 Q7L1Q6;C9IZ80;C9JFN4 Q7L1Q6 198 207 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.00072672 101.65 By MS/MS By matching 2 2 1.1007 1.0945 41.861 4 Median 1.1007 1.0945 5.7805 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8913 0.80339 65.325 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16097000 7370100 8727300 8534000 3860400 4673600 0 0 0 0 0 0 7563400 3509700 4053700 0 0 0 0 0 0 4443 3219 4624 22804;22805;22806;22807 23327 23327 1 DINAVLIDMER SALNLAKNIGLTKARDINAVLIDMERQGDV TKARDINAVLIDMERQGDVYRQGTTPPIWH R D I E R Q 1 1 1 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1287.6493 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 329 339 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.00012028 136.33 By matching By MS/MS By matching By MS/MS By MS/MS 1 3 1 3 4 1.0434 1.0374 14.264 12 Median NaN NaN NaN 0 0 Median 0.94487 0.83625 NaN 1 0 Median 0.92773 0.99162 11.439 3 0 Median 1.3851 1.2033 NaN 1 0 Median 1.0523 1.082 6.1237 3 0 Plateau 1.3258 1.1013 15.449 4 0 Median 27689000 13369000 14320000 0 0 0 722140 400750 321380 6945300 3219000 3726200 353590 140310 213280 14666000 7351400 7314800 5002200 2257700 2744500 4444 2498 4625 22808;22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819 23328;23329;23330;23331;23332;23333;23334;23335 23331 8 DINAYNCEEPTEK ALSIDSVEDHLAWSKDINAYNCEEPTEKLP SKDINAYNCEEPTEKLPFPIIDDRNRELAI K D I E K L 1 0 2 1 1 0 3 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 13 0 1581.6617 P30041 P30041 85 97 PRDX6 Peroxiredoxin-6 yes yes 2 2.973E-11 137.17 By MS/MS 2 1.0715 0.90119 3.8315 2 Median NaN NaN NaN 0 0 Median 1.0715 0.90119 3.8315 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9111600 4297500 4814100 0 0 0 9111600 4297500 4814100 0 0 0 0 0 0 0 0 0 0 0 0 4445 2179 4626 22820;22821 23336;23337 23337 2 DINELNLPK GSSKKASAAQLRIQKDINELNLPKTCDISF QLRIQKDINELNLPKTCDISFSDPDDLLNF K D I P K T 0 0 2 1 0 0 1 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1054.5659 P61081 P61081 37 45 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 2 0.00085609 94.114 By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 2 0.92859 0.77879 14.718 8 Median 0.7337 0.68631 10.583 2 0 Median 0.9376 0.80003 2.7863 2 0 Median 1.0018 0.93946 NaN 1 0 Median 0.93363 0.7732 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88584 0.72251 25.166 2 0 Median 76252000 38089000 38163000 34980000 18682000 16298000 8857500 4462300 4395200 28058000 12749000 15310000 2623200 1225400 1397800 0 0 0 1732900 970720 762210 4446 2542 4627 22822;22823;22824;22825;22826;22827;22828;22829 23338;23339;23340 23338 3 DINLQDEDWNEFNDINK NMAIPGGPKFEPLVRDINLQDEDWNEFNDI NLQDEDWNEFNDINKIIIRQPIRTEYKIAF R D I N K I 0 0 4 4 0 1 2 0 0 2 1 1 0 1 0 0 0 1 0 0 0 0 17 0 2120.9287 Q6P2Q9;I3L0J9 Q6P2Q9 285 301 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00081404 38.634 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 0.97232 0.97494 10.255 6 Median 1.0885 1.0316 NaN 1 0 Median 1.1643 1.0153 NaN 1 0 Median 0.85675 0.9339 0.34275 2 0 Median 1.2672 1.1389 NaN 1 0 Median 0.81816 0.84645 NaN 1 0 Median NaN NaN NaN 0 0 Median 13399000 6612500 6786700 2415100 1027300 1387800 1078700 520830 557900 9012800 4606800 4406000 247210 108570 138640 645350 348950 296400 0 0 0 4447 3157 4628 22830;22831;22832;22833;22834;22835 23341;23342;23343;23344 23342 4 DINQEVYNFLATAGAK IEAQVGGEKDLRRAKDINQEVYNFLATAGA INQEVYNFLATAGAKYGVGFWKPGSGIIHQ K D I A K Y 3 0 2 1 0 1 1 1 0 1 1 1 0 1 0 0 1 0 1 1 0 0 16 0 1752.8683 A2A274;Q99798 A2A274 145 160 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 7.7485E-05 75.695 By MS/MS By MS/MS By matching 2 2 2 1.053 1.0511 19.196 6 Median 1.053 1.0088 13.572 2 0 Median 1.3987 1.2423 18.354 2 0 Median 0.86214 0.90211 16.329 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17593000 7843200 9749600 11861000 5692100 6168800 4775500 1702800 3072700 956470 448370 508090 0 0 0 0 0 0 0 0 0 4448 495 4629 22836;22837;22838;22839;22840;22841 23345;23346;23347;23348;23349 23346 5 DINTFLGTPVQK GKAMHTPKPAVGEEKDINTFLGTPVQKLDQ EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ K D I Q K L 0 0 1 1 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 12 0 1331.7085 P46013 P46013 1794 1805 MKI67 Antigen KI-67 yes yes 2 5.8832E-06 111.61 By MS/MS 1 0.87971 0.94037 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87971 0.94037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12059000 6430900 5628500 0 0 0 0 0 0 12059000 6430900 5628500 0 0 0 0 0 0 0 0 0 4449 2335 4630 22842 23350 23350 1 DINTFVGTPVEK GKAMHTPKAAVGEEKDINTFVGTPVEKLDL EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ K D I E K L 0 0 1 1 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1318.6769 P46013 P46013 1916 1927 MKI67 Antigen KI-67 yes yes 2 1.2434E-05 97.813 By MS/MS By MS/MS 1 3 1.009 0.95177 8.8322 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0263 1.0975 NaN 1 0 Median 0.99192 0.94096 3.9649 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14824000 7263000 7561000 0 0 0 0 0 0 10900000 5254100 5646000 3923800 2008900 1915000 0 0 0 0 0 0 4450 2335 4631 22843;22844;22845;22846 23351;23352;23353;23354;23355;23356;23357 23352 7 DINWDSSQWQPLIQDR VLLCRQPCASQSSLKDINWDSSQWQPLIQD INWDSSQWQPLIQDRCFLSWLVKIPSEQEQ K D I D R C 0 1 1 3 0 3 0 0 0 2 1 0 0 0 1 2 0 2 0 0 0 0 16 0 1999.9388 Q92900 Q92900 221 236 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.043919 22.879 By MS/MS By matching 1 1 0.88558 0.84457 4.5403 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80964 0.87213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96866 0.81789 NaN 1 0 Median 1029500 495220 534240 0 0 0 0 0 0 965790 464180 501610 0 0 0 0 0 0 63668 31047 32621 4451 3564 4632 22847;22848 23358 23358 1 DIPGLTDTTVPR NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K D I P R R 0 1 0 2 0 0 0 1 0 1 1 0 0 0 2 0 3 0 0 1 0 0 12 0 1283.6721 P62753;A2A3R5 P62753 120 131 RPS6 40S ribosomal protein S6 yes no 2 3.9693E-06 132.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 3 0.90793 0.75796 9.7468 9 Median 0.81246 0.75796 NaN 1 0 Median 0.89598 0.74483 NaN 1 0 Median 0.75043 0.7302 NaN 1 1 Median 1.2081 0.95309 NaN 1 0 Median 0.82124 0.83049 14.24 2 1 Median 1.0375 0.7941 5.2955 3 0 Median 251720000 137540000 114180000 93532000 51651000 41881000 75548000 39738000 35810000 17032000 9843700 7187900 1056200 460610 595550 49351000 28435000 20916000 15196000 7406700 7789800 4452 2596 4633 22849;22850;22851;22852;22853;22854;22855;22856;22857 23359;23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370;23371;23372;23373;23374;23375 23361 17 DIPNENEAQFQIR EDGKMDRQMFLATWKDIPNENEAQFQIRDC WKDIPNENEAQFQIRDCPLNAEAASSKLQS K D I I R D 1 1 2 1 0 2 2 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 13 0 1572.7532 Q10567 Q10567 852 864 AP1B1 AP-1 complex subunit beta-1 yes yes 2 4.2058E-05 134.59 By MS/MS By matching By MS/MS By matching 1 2 2 1 1.0044 1.0663 15.12 6 Median 0.85553 0.82469 NaN 1 0 Median 1.0875 0.95623 16.143 2 0 Median 1.0044 1.0697 1.1845 2 2 Median 1.4563 1.216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25119000 13237000 11882000 9354100 5271800 4082300 2434700 1102600 1332100 13109000 6763300 6346000 221150 99470 121680 0 0 0 0 0 0 4453 2752 4634 22858;22859;22860;22861;22862;22863 23376;23377;23378;23379 23377 4 DIPNENELQFQIK EDGKMERQVFLATWKDIPNENELQFQIKEC WKDIPNENELQFQIKECHLNADTVSSKLQN K D I I K E 0 0 2 1 0 2 2 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 13 0 1586.794 A0A087X253;P63010 A0A087X253 819 831 AP2B1 AP-2 complex subunit beta yes no 2 0.035752 43.512 By MS/MS 1 0.48481 0.53468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48481 0.53468 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4305900 2598800 1707100 0 0 0 0 0 0 4305900 2598800 1707100 0 0 0 0 0 0 0 0 0 4454 128 4635 22864 23380 23380 1 DIPNMFMDSAGSVSK KYKAIASNSKIYFGKDIPNMFMDSAGSVSK DIPNMFMDSAGSVSKQFEGLADKLSFGLED K D I S K Q 1 0 1 2 0 0 0 1 0 1 0 1 2 1 1 3 0 0 0 1 0 0 15 0 1597.7116 O94905;E5RHW4 O94905 300 314 ERLIN2 Erlin-2 yes no 2 0.00021292 73.624 By MS/MS By matching 1 1 1.0486 0.93287 48.177 2 Median 0.71768 0.66355 NaN 1 0 Median 1.5321 1.3115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16397000 8595700 7801500 14974000 8073900 6900100 1423200 521850 901310 0 0 0 0 0 0 0 0 0 0 0 0 4455 848 4636 22865;22866 23381 23381 1 DIPPLEFPK KPRVHRPRSPILEEKDIPPLEFPKSSEDLM PILEEKDIPPLEFPKSSEDLMVPNEHIMNV K D I P K S 0 0 0 1 0 0 1 0 0 1 1 1 0 1 3 0 0 0 0 0 0 0 9 0 1054.5699 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 223 231 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0091518 49.418 By MS/MS By matching 1 1 0.55144 0.54971 30.122 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41139 0.44425 NaN 1 0 Median 0.73918 0.6802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4318600 2917600 1401000 0 0 0 0 0 0 4039200 2768200 1271000 279350 149400 129950 0 0 0 0 0 0 4456 2762 4637 22867;22868 23382;23383 23382 2 DIPSFER RDILEIGAQWSILRKDIPSFERYMAQLKCY AQWSILRKDIPSFERYMAQLKCYYFDYKEQ K D I E R Y 0 1 0 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 862.41848 R4GMR5;P48556;K7EJR3 R4GMR5 97 103 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.050156 40.103 By MS/MS By matching 1 1 0.94044 0.78773 25.041 2 Median NaN NaN NaN 0 0 Median 1.1271 0.94032 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7847 0.6599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4768800 2326300 2442500 0 0 0 4438400 2162600 2275800 0 0 0 330460 163700 166760 0 0 0 0 0 0 4457 2362 4638 22869;22870 23384 23384 1 DIPVLVATDVAAR DQSERNKVISDFKKKDIPVLVATDVAARGL KKDIPVLVATDVAARGLDIPSIKTVINYDV K D I A R G 3 1 0 2 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1338.7507 Q86XP3;A0A0A0MSJ0 Q86XP3 548 560 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 5.735E-07 106.29 By MS/MS By MS/MS By matching 2 1 1 0.76342 0.82536 71.194 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76342 0.82536 4.2315 2 1 Median 1.0617 0.90317 NaN 1 0 Median 0.17774 0.20548 NaN 1 0 Median NaN NaN NaN 0 0 Median 24236000 14612000 9623200 0 0 0 0 0 0 16965000 9575600 7389600 2932400 1424900 1507500 4337900 3611800 726070 0 0 0 4458 3302 4639 22871;22872;22873;22874 23385;23386;23387;23388;23389;23390 23386 6 DIPVTAQPSKDVHVVK EQSNEDIPIAEQSSKDIPVTAQPSKDVHVV IPVTAQPSKDVHVVKEQNPPPARSEDMPFS K D I V K E 1 0 0 2 0 1 0 0 1 1 0 2 0 0 2 1 1 0 0 4 0 0 16 1 1731.9519 A6NNK5;Q12888;C9JXV0 A6NNK5 240 255 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3;4 0.0019927 39.143 By MS/MS By MS/MS 2 1 0.53642 0.62322 41.558 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52247 0.60557 4.0632 2 0 Median 1.3232 1.2417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43674000 26623000 17051000 0 0 0 0 0 0 41274000 25782000 15492000 2400300 841060 1559200 0 0 0 0 0 0 4459 530 4640 22875;22876;22877 23391;23392;23393;23394;23395 23391 5 DIPVTAQPSKDVHVVKEQNPPPAR EQSNEDIPIAEQSSKDIPVTAQPSKDVHVV KDVHVVKEQNPPPARSEDMPFSPKASVAAM K D I A R S 2 1 1 2 0 2 1 0 1 1 0 2 0 0 5 1 1 0 0 4 0 0 24 2 2621.3925 A6NNK5;Q12888;C9JXV0 A6NNK5 240 263 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 4 1.114E-07 38.933 By MS/MS 1 0.28643 0.37842 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28643 0.37842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4959300 3120200 1839100 0 0 0 0 0 0 4959300 3120200 1839100 0 0 0 0 0 0 0 0 0 4460 530 4641 22878 23396 23396 1 DIPVVHQLLTR PETPKTAGLRPMETKDIPVVHQLLTRYLKQ METKDIPVVHQLLTRYLKQFHLTPVMSQEE K D I T R Y 0 1 0 1 0 1 0 0 1 1 2 0 0 0 1 0 1 0 0 2 0 0 11 0 1289.7456 P30419 P30419 345 355 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2;3 0.0013022 51.445 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.038 1.018 7.5357 6 Median 1.0092 1.0041 7.4616 2 0 Median 1.0325 0.92725 NaN 1 0 Median 1.0108 1.0473 9.5382 2 0 Median 1.2541 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17746000 8622500 9123500 5660900 2757200 2903700 197650 110560 87090 8795100 4393800 4401300 3092300 1360900 1731400 0 0 0 0 0 0 4461 2193 4642 22879;22880;22881;22882;22883;22884 23397;23398;23399;23400;23401;23402 23400 6 DIQEDSGMEPR VLFDTLLEEYSVLNKDIQEDSGMEPRNEEE VLNKDIQEDSGMEPRNEEEGNSEEIKAKVK K D I P R N 0 1 0 2 0 1 2 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 11 0 1275.5401 O75844 O75844 293 303 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2 0.00013548 114.5 By MS/MS 2 1.128 0.9588 11.175 2 Median NaN NaN NaN 0 0 Median 1.128 0.9588 11.175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6357300 3310900 3046400 0 0 0 6357300 3310900 3046400 0 0 0 0 0 0 0 0 0 0 0 0 4462 1700 4643 22885;22886 23403;23404 23404 2 DIQEESTFSSR LLSPARLYAIAAKEKDIQEESTFSSRKISN AKEKDIQEESTFSSRKISNQFDWALMRLDL K D I S R K 0 1 0 1 0 1 2 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 11 0 1297.5786 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 67 77 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 4.2112E-06 129.38 By MS/MS By MS/MS 1 2 1.6683 1.4107 49.219 3 Median 0.69238 0.66949 NaN 1 1 Median 1.8288 1.5468 13.024 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13675000 6248000 7426600 4811000 2908500 1902600 8863600 3339500 5524100 0 0 0 0 0 0 0 0 0 0 0 0 4463 2315 4644 22887;22888;22889 23405;23406;23407 23406 3 DIQENDEEAVQVK DREASIDILHSIVKRDIQENDEEAVQVKEQ KRDIQENDEEAVQVKEQSILELGSLLAKTG R D I V K E 1 0 1 2 0 2 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 13 0 1515.7053 O00231;J3QRY4 O00231 34 46 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.0001316 83.869 By matching By MS/MS By MS/MS 1 2 1 1.1204 1.0268 34.943 4 Median 0.60267 0.58053 NaN 1 0 Median 1.2123 1.033 23.474 2 0 Median 1.2212 1.2049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19601000 9653000 9947900 2415100 1452900 962280 12597000 6384800 6211700 4589200 1815300 2773900 0 0 0 0 0 0 0 0 0 4464 1448 4645 22890;22891;22892;22893 23408;23409;23410;23411 23409 4 DIQMPDGIR FDSEFKLACKVDGHKDIQMPDGIRREEFVQ KVDGHKDIQMPDGIRREEFVQWVELLPDTQ K D I I R R 0 1 0 2 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 0 9 0 1043.507 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4293 4301 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.014601 69.423 By MS/MS By MS/MS 1 1 1.0209 0.95219 5.0965 2 Median 0.9188 0.91849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1343 0.98713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6783600 3427100 3356600 5552900 2859200 2693800 0 0 0 0 0 0 1230700 567910 662790 0 0 0 0 0 0 4465 2865 4646 22894;22895 23412;23413 23413 1 DIQTLLSR SEPRVRLVMAQHMIRDIQTLLSRMETLPYL MAQHMIRDIQTLLSRMETLPYLQCRGGPQP R D I S R M 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 944.5291 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379 175 182 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0055542 75.109 By MS/MS By matching 1 1 1.2704 1.2952 21.601 2 Median 1.1497 1.1117 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4036 1.5089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6074900 2616000 3458800 5244000 2311600 2932500 0 0 0 830860 304490 526370 0 0 0 0 0 0 0 0 0 4466 8 4647 22896;22897 23414;23415 23414 2 DIQTNVYIK RVAEFHTELERLPAKDIQTNVYIKHPVSLE ERLPAKDIQTNVYIKHPVSLEQYLMEGSYN K D I I K H 0 0 1 1 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 9 0 1092.5815 R4GMR5;P48556;K7EJR3;K7EJC1;K7ERW6 R4GMR5 156 164 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.0018211 87.323 By MS/MS By MS/MS 1 2 1.1434 0.95703 3.9278 3 Median 1.0463 0.94742 NaN 1 0 Median 1.1768 0.98737 4.4141 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110640000 52322000 58313000 63963000 31256000 32707000 46672000 21066000 25606000 0 0 0 0 0 0 0 0 0 0 0 0 4467 2362 4648 22898;22899;22900 23416;23417;23418;23419;23420 23419 5 DIQYPFLGPVPTR QLEATLETGKRFIEKDIQYPFLGPVPTRMG EKDIQYPFLGPVPTRMGGFFNSGCSQCQIS K D I T R M 0 1 0 1 0 1 0 1 0 1 1 0 0 1 3 0 1 0 1 1 0 0 13 0 1501.7929 Q14CX7 Q14CX7 748 760 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.0031286 45.359 By MS/MS By matching By matching 1 1 1 0.86174 0.7452 33.968 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62454 0.6692 NaN 1 0 Median 0.86174 0.7452 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4446 1.2624 NaN 1 0 Median 2158500 1074300 1084200 0 0 0 0 0 0 1630300 764830 865440 419660 234960 184700 0 0 0 108590 74541 34050 4468 2908 4649 22901;22902;22903 23421 23421 1 DIRPGAAFEPTYIYR VPPKPRQALGDKIVRDIRPGAAFEPTYIYR DIRPGAAFEPTYIYRLLTVNKSSLSEKGRQ R D I Y R L 2 2 0 1 0 0 1 1 0 2 0 0 0 1 2 0 1 0 2 0 0 0 15 1 1767.8944 Q14694;J3KT19 Q14694 492 506 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 3 0.056117 21.093 By MS/MS 1 0.82156 0.91278 NaN 1 Median 0.82156 0.91278 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4579000 2441900 2137200 4579000 2441900 2137200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4469 2894 4650 22904 23422 23422 1 DISAPKPGPLK GRTAASGAAGDKDTKDISAPKPGPLKKAPA KDTKDISAPKPGPLKKAPAAKAGGPPKKGK K D I L K K 1 0 0 1 0 0 0 1 0 1 1 2 0 0 3 1 0 0 0 0 0 0 11 1 1121.6445 Q14008 Q14008 534 544 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0020943 69.598 By MS/MS By matching By MS/MS 2 1 1 0.53802 0.72253 22.22 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54172 0.62309 23.118 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53802 0.48011 NaN 1 1 Median 14194000 8324500 5869000 0 0 0 0 0 0 10505000 6127200 4377400 752210 601800 150410 0 0 0 2936700 1595500 1341200 4470 2850 4651 22905;22906;22907;22908 23423;23424;23425;23426;23427 23424 5 DISAPKPGPLKK GRTAASGAAGDKDTKDISAPKPGPLKKAPA DTKDISAPKPGPLKKAPAAKAGGPPKKGKP K D I K K A 1 0 0 1 0 0 0 1 0 1 1 3 0 0 3 1 0 0 0 0 0 0 12 2 1249.7394 Q14008 Q14008 534 545 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.05831 15.387 By matching By MS/MS By MS/MS By matching 1 2 1 2 0.69967 0.76312 17.712 6 Median 0.69803 0.76425 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72107 0.8508 11.838 2 0 Median 0.73906 0.74905 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60466 0.64006 24.659 2 0 Median 5796300 3273300 2523100 565390 274390 291000 0 0 0 3035000 1734800 1300200 704550 372810 331740 0 0 0 1491300 891240 600110 4471 2850 4652 22909;22910;22911;22912;22913;22914 23428;23429 23428 2 DISEASVFDAYVLPK KKFVIRNIVEAAAVRDISEASVFDAYVLPK DISEASVFDAYVLPKLYVKLHYCVSCAIHS R D I P K L 2 0 0 2 0 0 1 0 0 1 1 1 0 1 1 2 0 0 1 2 0 0 15 0 1652.8298 P62854 P62854 52 66 RPS26 40S ribosomal protein S26 yes yes 2 0.0014058 39.917 By matching By MS/MS By MS/MS By matching 1 1 2 2 1.0297 0.90439 10.816 5 Median 0.91223 0.86126 NaN 1 0 Median 1.0297 0.88763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99373 1.1226 NaN 1 0 Median 1.1744 0.94934 6.8599 2 0 Median 10083000 5006100 5076600 2049800 1012300 1037500 2425200 1158300 1266900 0 0 0 0 0 0 4489000 2261000 2228100 1118600 574570 544070 4472 2601 4653 22915;22916;22917;22918;22919;22920 23430;23431 23431 2 DISEVIALGVPNPR AAPDKRSKLQRNENRDISEVIALGVPNPRT RDISEVIALGVPNPRTSNEVQYDQRLFNQS R D I P R T 1 1 1 1 0 0 1 1 0 2 1 0 0 0 2 1 0 0 0 2 0 0 14 0 1478.8093 Q13573;G3V3A4;G3V4X8 Q13573 387 400 SNW1 SNW domain-containing protein 1 yes no 2 1.325E-05 87.913 By MS/MS By matching 3 1 1.0031 0.98329 22.178 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0448 1.1352 25.208 3 0 Median 0.96314 0.85171 NaN 1 0 Median 2252100 1274000 978180 0 0 0 0 0 0 0 0 0 0 0 0 2124600 1173800 950860 127520 100200 27325 4473 2826 4654 22921;22922;22923;22924 23432;23433 23432 2 DISGPSPSKKLK RIQPEDMFVCDINEKDISGPSPSKKLKKSQ NEKDISGPSPSKKLKKSQCTPLFMNAYTMR K D I L K K 0 0 0 1 0 0 0 1 0 1 1 3 0 0 2 3 0 0 0 0 0 0 12 2 1255.7136 Q96GX9;S4R3D6 Q96GX9 82 93 APIP Methylthioribulose-1-phosphate dehydratase yes no 3 0.049029 17.666 By matching By matching By MS/MS By matching 1 1 2 1 0.88925 0.91782 16.713 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88925 0.91782 NaN 1 0 Median 0.85428 0.80414 NaN 1 0 Median 0.82062 0.92871 29.164 2 0 Median 1.1756 1.0089 NaN 1 0 Median 50452000 22667000 27785000 0 0 0 0 0 0 3844300 1976700 1867700 472970 246900 226070 26888000 13228000 13660000 19247000 7215200 12032000 4474 3663 4655 22925;22926;22927;22928;22929 23434 23434 1 DISLAALQR ______________________________ LVGKGRDISLAALQRHDPYINRIVDVASQV R D I Q R H 2 1 0 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 985.55564 Q8IZD4;F5H4R4;B4DVJ6 Q8IZD4 15 23 DCP1B mRNA-decapping enzyme 1B yes no 2 0.029888 36.395 By MS/MS 1 0.59557 0.62468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59557 0.62468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1247200 757950 489200 0 0 0 0 0 0 1247200 757950 489200 0 0 0 0 0 0 0 0 0 4475 3349 4656 22930 23435 23435 1 DISLSDYK PNFKATAVMPDGQFKDISLSDYKGKYVVFF MPDGQFKDISLSDYKGKYVVFFFYPLDFTF K D I Y K G 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 939.45493 Q06830;A0A0A0MSI0 Q06830 28 35 PRDX1 Peroxiredoxin-1 yes no 2 0.0032009 100.45 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 2 1.3857 1.1605 36.789 9 Median 1.3857 1.2737 NaN 1 0 Median 1.3248 1.1386 14.432 3 0 Median 1.4509 1.3607 NaN 1 0 Median 1.4007 1.1605 NaN 1 0 Median 3.163 3.2262 NaN 1 0 Median 1.2079 0.99399 17.772 2 0 Median 293010000 117140000 175870000 206480000 81197000 125280000 44490000 18977000 25513000 32797000 13489000 19309000 3696700 1545400 2151300 1947200 414570 1532700 3596800 1519700 2077100 4476 2728 4657 22931;22932;22933;22934;22935;22936;22937;22938;22939 23436;23437;23438;23439;23440;23441;23442;23443;23444 23437 9 DISLSDYKGK PNFKATAVMPDGQFKDISLSDYKGKYVVFF DGQFKDISLSDYKGKYVVFFFYPLDFTFVC K D I G K Y 0 0 0 2 0 0 0 1 0 1 1 2 0 0 0 2 0 0 1 0 0 0 10 1 1124.5714 Q06830;A0A0A0MSI0 Q06830 28 37 PRDX1 Peroxiredoxin-1 yes no 2 0.0017684 87.639 By MS/MS By matching 1 1 1.4577 1.4032 36.118 2 Median 1.7843 1.8115 NaN 1 0 Median 1.1908 1.0869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35941000 13358000 22584000 25803000 8608800 17194000 10139000 4748800 5389800 0 0 0 0 0 0 0 0 0 0 0 0 4477 2728 4658 22940;22941 23445 23445 1 DISMEIDSPENMMR QEKLDQPVSAPPSPRDISMEIDSPENMMRH RDISMEIDSPENMMRHIRFLKNEVERLKKQ R D I M R H 0 1 1 2 0 0 2 0 0 2 0 0 3 0 1 2 0 0 0 0 0 0 14 0 1666.7001 Q16204 Q16204 247 260 CCDC6 Coiled-coil domain-containing protein 6 yes yes 2 0.00084507 58.37 By MS/MS 1 0.76341 0.77162 NaN 1 Median 0.76341 0.77162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2084900 1182500 902330 2084900 1182500 902330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4478 2980 4659 22942 23446;23447 23446 2 DISNTLIMLADK SGNVEAKVVCFYRRRDISNTLIMLADKHAK RRRDISNTLIMLADKHAKEIEEESETTVEA R D I D K H 1 0 1 2 0 0 0 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 12 0 1332.6959 E7EQY4;E7EV10;Q9BTC8;E9PCS8;E9PF88 E7EQY4 50 61 MTA3 Metastasis-associated protein MTA3 yes no 2 0.00058963 73.067 By MS/MS By matching By MS/MS By matching 4 2 1 1 1.1068 1.0125 27.028 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80975 0.82736 39.7 4 0 Median 1.2023 1.0419 2.6203 2 0 Median 0.89286 0.85805 NaN 1 1 Median 1.2463 1.0373 NaN 1 0 Median 13102000 6197100 6905400 0 0 0 0 0 0 10748000 5090700 5657000 352380 144900 207480 1491800 742570 749260 510540 218950 291590 4479 881 4660 22943;22944;22945;22946;22947;22948;22949;22950 23448;23449;23450 23448 3 DISPVLKDPASFR IRSFPDFPTPGVVFRDISPVLKDPASFRAA FRDISPVLKDPASFRAAIGLLARHLKATHG R D I F R A 1 1 0 2 0 0 0 0 0 1 1 1 0 1 2 2 0 0 0 1 0 0 13 1 1443.7722 P07741;H3BQZ9;H3BQB1;H3BQF1;H3BSW3 P07741 28 40 APRT Adenine phosphoribosyltransferase yes no 2;3 3.293E-06 151.15 By MS/MS By MS/MS By MS/MS By matching By matching 5 2 1 2 1 0.83794 0.83692 67.526 10 Median 0.86728 0.87294 72.51 4 1 Median 1.0347 0.91349 2.4573 2 0 Median 0.81397 0.85269 NaN 1 0 Median 0.41702 0.37623 75.447 2 0 Median NaN NaN NaN 0 0 Median 0.76681 0.61345 NaN 1 0 Median 557170000 253220000 303950000 439600000 198130000 241470000 102090000 47001000 55088000 14226000 7368900 6857500 836360 540070 296300 0 0 0 416130 181490 234640 4480 1891 4661 22951;22952;22953;22954;22955;22956;22957;22958;22959;22960;22961 23451;23452;23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471 23462 21 DISQAYYTVYKK ALIEILTTRTSRQMKDISQAYYTVYKKSLG QMKDISQAYYTVYKKSLGDDISSETSGDFR K D I K K S 1 0 0 1 0 1 0 0 0 1 0 2 0 0 0 1 1 0 3 1 0 0 12 1 1477.7453 P12429;D6RA82;D6RFG5 P12429 127 138 ANXA3 Annexin A3;Annexin yes no 2;3 0.00085242 70.977 By MS/MS By matching 2 1 1.4082 1.3648 6.5197 3 Median 1.4431 1.3996 3.5639 2 0 Median 1.3998 1.2612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42255000 17965000 24290000 39277000 16709000 22568000 2978400 1256000 1722300 0 0 0 0 0 0 0 0 0 0 0 0 4481 1981 4662 22962;22963;22964 23472;23473 23472 2 DISSIGLK DTLCTNMLSDKEQLRDISSIGLKTVIGELP SDKEQLRDISSIGLKTVIGELPPASSGSAL R D I L K T 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 2 0 0 0 0 0 0 8 0 831.47018 Q86VP6 Q86VP6 104 111 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.011256 57.281 By MS/MS By matching By matching 1 1 1 1.3888 1.188 18.449 3 Median 1.2036 1.1759 NaN 1 0 Median 1.3888 1.188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9518 1.6268 NaN 1 0 Median 10309000 4438600 5870700 4699000 2018700 2680300 4830800 2129200 2701600 0 0 0 0 0 0 0 0 0 779480 290720 488760 4482 3288 4663 22965;22966;22967 23474;23475 23474 2 DISSSLNSLADSNAR NGNVEAKVVCLFRRRDISSSLNSLADSNAR DISSSLNSLADSNAREFEEESKQPGVSEQQ R D I A R E 2 1 2 2 0 0 0 0 0 1 2 0 0 0 0 5 0 0 0 0 0 0 15 0 1548.738 O94776 O94776 50 64 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 8.6165E-10 153.95 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 4 1.1025 1.021 20.189 10 Median 1.5697 1.5103 NaN 1 1 Median 1.0169 0.91787 NaN 1 0 Median 1.1811 1.2237 19.941 2 0 Median 1.0527 0.89537 10.361 2 0 Median 1.0534 1.058 15.946 4 1 Median NaN NaN NaN 0 0 Median 77587000 34859000 42728000 4261700 1764500 2497200 327080 122690 204380 56160000 25147000 31012000 2039700 972930 1066800 14799000 6851300 7947500 0 0 0 4483 1723 4664 22968;22969;22970;22971;22972;22973;22974;22975;22976;22977 23476;23477;23478;23479;23480;23481;23482;23483;23484;23485;23486 23485 11 DISSTLIALADK NGNVEAKVVCFYRRRDISSTLIALADKHAT RRRDISSTLIALADKHATLSVCYKAGPGAD R D I D K H 2 0 0 2 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 12 0 1245.6816 E7ESY4;Q13330;H7C3F3 E7ESY4 50 61 MTA1 Metastasis-associated protein MTA1 yes no 2 0.06025 24.855 By MS/MS By matching By matching By matching 3 1 2 1 0.91943 0.94261 17.893 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89 0.93749 16.315 3 0 Median 1.1732 1.0376 NaN 1 0 Median 0.90359 0.93037 1.8476 2 0 Median 1.5958 1.372 NaN 1 0 Median 11099000 5627300 5471300 0 0 0 0 0 0 6300000 3246800 3053200 292890 132990 159900 4362200 2188900 2173300 143400 58555 84842 4484 888 4665 22978;22979;22980;22981;22982;22983;22984 23487 23487 1 DISTLNSGK YRHFDETVNRYKQSRDISTLNSGKKSLETE RYKQSRDISTLNSGKKSLETEHKALTSEIA R D I G K K 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 2 1 0 0 0 0 0 9 0 933.47673 P04843;B7Z4L4 P04843 508 516 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.0028118 69.423 By MS/MS 1 1.525 1.2979 NaN 1 Median NaN NaN NaN 0 0 Median 1.525 1.2979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4531800 1907800 2624100 0 0 0 4531800 1907800 2624100 0 0 0 0 0 0 0 0 0 0 0 0 4485 1853 4666 22985 23488 23488 1 DISTLNSGKK YRHFDETVNRYKQSRDISTLNSGKKSLETE YKQSRDISTLNSGKKSLETEHKALTSEIAL R D I K K S 0 0 1 1 0 0 0 1 0 1 1 2 0 0 0 2 1 0 0 0 0 0 10 1 1061.5717 P04843;B7Z4L4 P04843 508 517 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.018009 41.029 By matching By MS/MS 1 1 1.0933 1.0357 2.9471 2 Median 1.1062 1.0575 NaN 1 0 Median 1.0806 1.0144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2818700 1295300 1523400 1201600 533940 667610 1617100 761350 855760 0 0 0 0 0 0 0 0 0 0 0 0 4486 1853 4667 22986;22987 23489;23490 23489 2 DISTNKVEQIPYGER KPPPVQQTVDYGHGRDISTNKVEQIPYGER DISTNKVEQIPYGERITLRPDPLPERSTFE R D I E R I 0 1 1 1 0 1 2 1 0 2 0 1 0 0 1 1 1 0 1 1 0 0 15 1 1747.8741 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1647 1661 YLPM1 YLP motif-containing protein 1 yes no 2;3 1.4657E-10 142.1 By MS/MS By MS/MS By MS/MS 1 3 2 0.79758 0.82315 13.675 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83593 1.0012 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72272 0.85301 7.3052 3 0 Plateau 0.96773 0.84983 21.176 2 0 Median 104630000 55240000 49389000 0 0 0 0 0 0 42618000 22118000 20500000 0 0 0 57564000 30597000 26967000 4447000 2525000 1922100 4487 2395 4668 22988;22989;22990;22991;22992;22993 23491;23492;23493;23494;23495;23496;23497;23498;23499;23500 23497 10 DISTNYYASQK NMERIMKAQAYQTGKDISTNYYASQKKTFE QTGKDISTNYYASQKKTFEINPRHPLIRDM K D I Q K K 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 2 1 0 2 0 0 0 11 0 1288.5935 P14625;H0YIV0 P14625 672 682 HSP90B1 Endoplasmin yes no 2 0.00016143 81.338 By MS/MS By MS/MS 3 2 1.2001 1.0999 42.564 5 Median 1.1214 1.0772 50.959 3 1 Median 1.4105 1.2249 3.7563 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76323000 35532000 40791000 47577000 23107000 24470000 28746000 12425000 16321000 0 0 0 0 0 0 0 0 0 0 0 0 4488 2006 4669 22994;22995;22996;22997;22998 23501;23502;23503;23504;23505;23506 23501 6 DISTNYYASQKK NMERIMKAQAYQTGKDISTNYYASQKKTFE TGKDISTNYYASQKKTFEINPRHPLIRDML K D I K K T 1 0 1 1 0 1 0 0 0 1 0 2 0 0 0 2 1 0 2 0 0 0 12 1 1416.6885 P14625;H0YIV0 P14625 672 683 HSP90B1 Endoplasmin yes no 2;3 0.00085242 70.977 By MS/MS By matching 4 1 0.95444 1.0037 38.91 5 Median 0.79202 0.81919 43.76 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1262 1.0126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12812000 6214600 6597800 12215000 5983500 6231200 0 0 0 0 0 0 597660 231090 366570 0 0 0 0 0 0 4489 2006 4670 22999;23000;23001;23002;23003 23507;23508;23509;23510 23507 4 DISTTLNADEAVAR RIPAVKEQITKFFLKDISTTLNADEAVARG KDISTTLNADEAVARGCALQCAILSPAFKV K D I A R G 3 1 1 2 0 0 1 0 0 1 1 0 0 0 0 1 2 0 0 1 0 0 14 0 1474.7264 O95757;E9PDE8;D6RJ96;Q92598;A0A0A0MSM0 O95757 361 374 HSPA4L;HSPH1 Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa no no 2 1.1871E-07 165.11 By MS/MS By MS/MS By matching 2 1 1 1.2718 1.2862 25.998 4 Median 1.4322 1.4012 6.3071 2 0 Median 0.95776 0.81407 NaN 1 0 Median 1.1598 1.2346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80404000 32367000 48037000 69763000 27688000 42076000 3664700 1832000 1832600 6976000 2847400 4128600 0 0 0 0 0 0 0 0 0 4490 1790;3541 4671 23004;23005;23006;23007 23511;23512;23513;23514;23515 23511 5 DITAEFLVK LHQQYKEASEVKPPRDITAEFLVKSKHRDL EVKPPRDITAEFLVKSKHRDLTALCKEYDE R D I V K S 1 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1034.5648 O60341;R4GMQ1 O60341 473 481 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.053179 30.167 By matching By MS/MS By matching By matching 1 1 1 1 1.3676 1.3443 44.359 4 Median 0.73541 0.77076 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.033 1.1388 NaN 1 0 Median 1.8105 1.5869 NaN 1 0 Median 2.1116 2.1657 NaN 1 0 Median NaN NaN NaN 0 0 Median 6311500 2881000 3430500 945320 311680 633640 0 0 0 4201800 2169500 2032200 78244 24527 53717 1086200 375270 710910 0 0 0 4491 1613 4672 23008;23009;23010;23011 23516 23516 1 DITEEIMSGAR ERKTIRIRDPNQGGKDITEEIMSGARTAST QGGKDITEEIMSGARTASTPTPPQTGGGLE K D I A R T 1 1 0 1 0 0 2 1 0 2 0 0 1 0 0 1 1 0 0 0 0 0 11 0 1220.5707 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7;F8WCF2;C9JHW9 E7EX73 27 37 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00020344 102.61 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.2967 1.1812 31.241 7 Median 1.2091 1.1423 NaN 1 0 Median 1.0367 0.88516 NaN 1 0 Median 1.3132 1.4585 1.8188 2 2 Median 1.3418 1.1812 NaN 1 0 Median 2.1776 2.2568 NaN 1 0 Median 1.1477 0.97487 NaN 1 0 Median 19122000 8523900 10598000 6347700 2767100 3580600 6829900 3310200 3519700 4679300 1981100 2698200 216670 99356 117310 935700 304740 630960 112470 61412 51062 4492 894 4673 23012;23013;23014;23015;23016;23017;23018 23517;23518;23519;23520 23517 4 DITFPPGSVEATQPVLK SHIAPAPVQPPMIRRDITFPPGSVEATQPV TFPPGSVEATQPVLKQRRRLTMKDIGTPEA R D I L K Q 1 0 0 1 0 1 1 1 0 1 1 1 0 1 3 1 2 0 0 2 0 0 17 0 1797.9513 O14497;H0Y488;A0A1B0GTU5;H0YEW5 O14497 1638 1654 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 2.2123E-05 61.435 By MS/MS By matching 1 1 0.71595 0.7155 1.5409 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65148 0.72334 NaN 1 0 Median 0.78681 0.70775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7472300 4671300 2801000 0 0 0 0 0 0 7268700 4562200 2706500 203550 109090 94456 0 0 0 0 0 0 4493 1480 4674 23019;23020 23521;23522;23523 23521 3 DITLEASR SYNNFFRMFDRNTKRDITLEASRENNKPRT FDRNTKRDITLEASRENNKPRTVLKPRKVC R D I S R E 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 0 903.46616 P63151;A0A590UJY3;A0A590UJJ1;E5RFR9 P63151 376 383 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2 0.0048349 101.28 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4494 2619 4675 23021 23524 23524 1 DITLFHAMDTLHK VRQPSLHMSAAAASRDITLFHAMDTLHKNI SRDITLFHAMDTLHKNIYDISKAISALVPQ R D I H K N 1 0 0 2 0 0 0 0 2 1 2 1 1 1 0 0 2 0 0 0 0 0 13 0 1540.7708 E7ESY4;Q13330;H0Y4T7 E7ESY4 248 260 MTA1 Metastasis-associated protein MTA1 yes no 3 0.054361 13.404 By matching By MS/MS By matching By matching 1 2 1 1 1.1743 1.2916 21.459 5 Median 0.93942 0.88472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1325 1.1678 25.584 2 0 Median 1.5677 1.3946 NaN 1 0 Median 1.1743 1.2916 NaN 1 0 Median NaN NaN NaN 0 0 Median 24403000 12374000 12029000 1109600 597820 511760 0 0 0 14058000 6940300 7117900 181060 79600 101460 9053900 4756000 4297900 0 0 0 4495 888 4676 23022;23023;23024;23025;23026 23525;23526;23527 23526 3 DITLFHAMDTLQR IRQPSLHMSAAAASRDITLFHAMDTLQRNG SRDITLFHAMDTLQRNGYDLAKAMSTLVPQ R D I Q R N 1 1 0 2 0 1 0 0 1 1 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1559.7766 O94776 O94776 228 240 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 9.2871E-05 85.256 By matching By matching By MS/MS By matching By MS/MS By matching 1 3 2 4 6 3 1.0943 0.99677 38.442 19 Median 0.99134 0.99039 NaN 1 0 Median 1.0943 0.99677 17.828 3 0 Plateau 1.1064 1.1334 14.579 2 0 Median 1.0475 0.89957 9.927 4 0 Median 1.1409 1.2067 9.3577 6 1 Median 1.1281 0.99652 94.409 3 0 Median 30793000 13983000 16810000 591870 287410 304460 1617000 806960 810070 16435000 7625300 8809600 1552200 737390 814810 9176000 4093900 5082100 1421200 431900 989280 4496 1723 4677 23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044;23045 23528;23529;23530;23531;23532;23533;23534;23535 23528 8 DITLFHAMDTLYR VRQPSLHMSAAAASRDITLFHAMDTLYRHS SRDITLFHAMDTLYRHSYDLSSAISVLVPL R D I Y R H 1 1 0 2 0 0 0 0 1 1 2 0 1 1 0 0 2 0 1 0 0 0 13 0 1594.7814 E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2 E7EQY4 231 243 MTA3 Metastasis-associated protein MTA3 yes no 3 0.0076602 26.969 By MS/MS By matching By matching 2 2 1 1.0783 1.0958 9.1364 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98226 1.0172 7.9169 2 0 Median NaN NaN NaN 0 0 Median 1.1468 1.1622 8.3155 2 0 Median 1.3131 1.1491 NaN 1 0 Median 6014400 2760900 3253500 0 0 0 0 0 0 4325100 2050700 2274400 0 0 0 1325000 568070 756880 364330 142160 222170 4497 881 4678 23046;23047;23048;23049;23050 23536;23537 23536 2 DITSDTSGDFR INRVYREELKRDLAKDITSDTSGDFRNALL DLAKDITSDTSGDFRNALLSLAKGDRSEDF K D I F R N 0 1 0 3 0 0 0 1 0 1 0 0 0 1 0 2 2 0 0 0 0 0 11 0 1212.5259 P04083;Q5T3N1 P04083 167 177 ANXA1 Annexin A1;Annexin yes no 2 0.00011565 141.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 2 1 1 1.2486 1.0713 57.912 10 Median 1.3891 1.3483 6.7317 2 1 Median 1.2266 1.0404 27.177 3 0 Plateau 1.2944 1.2584 NaN 1 0 Median 1.2385 1.0401 1.9224 2 0 Median 3.541 3.7977 NaN 1 0 Median 0.42203 0.38717 NaN 1 0 Median 167210000 72854000 94351000 55780000 23196000 32585000 76867000 35409000 41459000 22070000 8930500 13140000 10387000 4503000 5884400 1738100 547730 1190400 361650 268620 93031 4498 1844 4679 23051;23052;23053;23054;23055;23056;23057;23058;23059;23060 23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550 23539 13 DITSSIHFEAYR YLRDLLIRTHMQNIKDITSSIHFEAYRVKR NIKDITSSIHFEAYRVKRLNEGSSAMANGM K D I Y R V 1 1 0 1 0 0 1 0 1 2 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1437.6888 Q9UHD8 Q9UHD8 550 561 SEPT9 Septin-9 yes yes 2;3 5.4737E-06 145.89 By matching By MS/MS By MS/MS By matching By matching 1 6 6 1 1 1.2663 1.1989 16.296 15 Median 0.82901 0.82307 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0667 1.0862 11.96 6 0 Median 1.5058 1.2973 9.8471 6 0 Median 0.88919 0.94738 NaN 1 0 Median 1.4986 1.232 NaN 1 0 Median 90916000 40297000 50619000 1278000 599760 678200 0 0 0 76889000 34418000 42471000 11204000 4492400 6711200 1005300 497640 507640 540010 288400 251610 4499 4276 4680 23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072;23073;23074;23075 23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562 23554 12 DITYFIQQLLR YVIGSCIKHIPIAGRDITYFIQQLLRDREV IAGRDITYFIQQLLRDREVGIPPEQSLETA R D I L R D 0 1 0 1 0 2 0 0 0 2 2 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.7715 B4DXW1;P61158;Q9P1U1;A0A0A0MTI9;H7C4J1;C9IZN3;Q9C0K3 B4DXW1 148 158 ACTR3;ACTR3B;ACTR3C Actin-related protein 3;Actin-related protein 3B;Actin-related protein 3C yes no 2 0.00014351 84.476 By matching By MS/MS By MS/MS 1 2 2 1.2336 1.1905 7.1579 5 Median 1.1941 1.1905 NaN 1 0 Median 1.4401 1.269 9.1174 2 0 Median 1.1824 1.1868 8.3389 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34767000 15218000 19549000 63514 32414 31101 23643000 10079000 13564000 11061000 5106300 5954300 0 0 0 0 0 0 0 0 0 4500 607 4681 23076;23077;23078;23079;23080 23563;23564;23565;23566 23565 4 DIVEELSALK PTSTRRRPKTPLGKRDIVEELSALKQLTQT PLGKRDIVEELSALKQLTQTTHTDKVPGDE R D I L K Q 1 0 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1115.6074 P46013 P46013 2129 2138 MKI67 Antigen KI-67 yes yes 2 0.00040727 76.827 By matching By MS/MS By matching By matching By MS/MS 2 3 3 3 3 1.1134 1.1401 32.601 14 Median NaN NaN NaN 0 0 Median 1.2345 1.0891 20.396 2 0 Median 1.0968 1.1682 7.542 3 0 Median 1.3666 1.199 5.3307 3 0 Median 1.1447 1.1995 8.821 3 0 Plateau 0.91589 0.76423 46.01 3 0 Median 50741000 23566000 27176000 0 0 0 731510 329280 402230 35697000 16514000 19183000 567010 238450 328560 6095600 2671400 3424200 7649600 3812000 3837600 4501 2335 4682 23081;23082;23083;23084;23085;23086;23087;23088;23089;23090;23091;23092;23093;23094 23567;23568;23569;23570;23571 23569 5 DIVENYFMR TVVDCPVCKQQCFSKDIVENYFMRDSGSKA QQCFSKDIVENYFMRDSGSKAATDAQDANQ K D I M R D 0 1 1 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 9 0 1185.5488 Q13263;M0R2I3 Q13263 128 136 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.0005572 114.6 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 1 9 3 5 1 1.0068 1.0308 11.037 22 Median 0.88759 0.90002 4.4275 3 0 Median 1.166 1.0153 NaN 1 0 Median 1.01 1.0597 11.582 9 0 Median 1.2072 1.0377 3.6775 3 0 Median 0.99859 1.0321 9.698 5 0 Median 1.1499 0.9771 NaN 1 0 Median 87757000 42709000 45048000 34800000 17792000 17009000 1251400 469400 781960 33276000 15542000 17734000 1458200 682830 775330 15698000 7653200 8044300 1273600 570110 703520 4502 2802 4683 23095;23096;23097;23098;23099;23100;23101;23102;23103;23104;23105;23106;23107;23108;23109;23110;23111;23112;23113;23114;23115;23116;23117 23572;23573;23574;23575;23576;23577;23578;23579;23580;23581;23582;23583;23584;23585 23575 14 DIVHKPGPIVLTVAK NFENMSNDDAVRVLRDIVHKPGPIVLTVAK DIVHKPGPIVLTVAKCWDPSPQAYFTLPRN R D I A K C 1 0 0 1 0 0 0 1 1 2 1 2 0 0 2 0 1 0 0 3 0 0 15 1 1585.9556 I3L2N2;O14641;I3L2W9;I3L0M7;I3L0Z8 I3L2N2 333 347 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes no 3 0.00035239 42.958 By matching By matching By MS/MS 1 1 1 0.73092 0.70526 46.289 3 Median 0.79971 0.82678 NaN 1 0 Median 0.73092 0.70526 NaN 1 0 Median 0.30356 0.34662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12588000 9580800 3006700 2296100 1442200 853930 620430 365070 255360 9671000 7773500 1897400 0 0 0 0 0 0 0 0 0 4503 1284 4684 23118;23119;23120 23586 23586 1 DIVHSGLAYTMER PTAEFQDRISGASEKDIVHSGLAYTMERSA EKDIVHSGLAYTMERSARQIMRTAMKYNLG K D I E R S 1 1 0 1 0 0 1 1 1 1 1 0 1 0 0 1 1 0 1 1 0 0 13 0 1490.7188 P00367 P00367 504 516 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2;3 0.00010955 84.658 By MS/MS By matching By MS/MS By matching 2 2 2 1 0.94606 0.95183 16.087 7 Median 0.9455 0.91056 1.499 2 0 Median 1.4261 1.2349 6.9154 2 0 Median 0.8464 0.9008 7.7932 2 0 Median 1.3018 1.1507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27018000 14023000 12995000 18851000 9986300 8864800 3350400 1395700 1954700 4729800 2607400 2122400 86686 33116 53569 0 0 0 0 0 0 4504 1814 4685 23121;23122;23123;23124;23125;23126;23127 23587;23588;23589;23590 23588 4 DIVLLEQGR TGTSVAYHLSKMGWKDIVLLEQGRLAAGST SKMGWKDIVLLEQGRLAAGSTRFCAGILST K D I G R L 0 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1041.5819 Q8NCN5;H3BQG3 Q8NCN5 68 76 PDPR Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial yes no 2 0.0078737 50.607 By MS/MS 1 0.72452 0.62879 NaN 1 Median NaN NaN NaN 0 0 Median 0.72452 0.62879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2412900 1228200 1184700 0 0 0 2412900 1228200 1184700 0 0 0 0 0 0 0 0 0 0 0 0 4505 3419 4686 23128 23591 23591 1 DIVPGDIVEIAVGDK VYRQDRKSVQRIKAKDIVPGDIVEIAVGDK DIVPGDIVEIAVGDKVPADIRLTSIKSTTL K D I D K V 1 0 0 3 0 0 1 2 0 3 0 1 0 0 1 0 0 0 0 3 0 0 15 0 1538.8192 P16615 P16615 144 158 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes yes 2 0.045984 23.605 By MS/MS 1 1.2002 1.0664 NaN 1 Median NaN NaN NaN 0 0 Median 1.2002 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2908700 1142200 1766600 0 0 0 2908700 1142200 1766600 0 0 0 0 0 0 0 0 0 0 0 0 4506 2031 4687 23129 23592 23592 1 DIVQFVPFR DGGSLRSPLGEVAIRDIVQFVPFRQFQNAP GEVAIRDIVQFVPFRQFQNAPKEALAQCVL R D I F R Q 0 1 0 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 9 0 1119.6077 O75131;E7ENV7;Q96FN4;Q8IYJ1;Q96A23;O95741;Q86YQ8;Q9HCH3;Q9UBL6 O75131 485 493 CPNE3;CPNE8;CPNE2;CPNE9;CPNE4;CPNE6;CPNE5;CPNE7 Copine-3;Copine-2;Copine-9;Copine-4;Copine-6;Copine-8;Copine-5;Copine-7 yes no 2 0.001612 79.597 By MS/MS By matching By MS/MS By MS/MS By matching By matching 5 4 2 1 1 1 0.91659 0.85661 17.882 14 Median 0.83712 0.85546 10.587 5 0 Median 0.96367 0.82484 12.552 4 0 Median 0.871 0.84693 17.798 2 0 Median 1.0701 0.93262 NaN 1 0 Median 1.4208 1.4316 NaN 1 0 Median 0.95341 0.78908 NaN 1 0 Median 27788000 14113000 13674000 15831000 8253100 7578300 1956100 1001900 954190 8933800 4449600 4484200 452210 202130 250090 447750 127460 320280 166470 79062 87411 4507 1645 4688 23130;23131;23132;23133;23134;23135;23136;23137;23138;23139;23140;23141;23142;23143 23593;23594;23595;23596;23597;23598;23599 23598 7 DIVQFVPYR DGGPLHTRSGQAAARDIVQFVPYRRFQNAP GQAAARDIVQFVPYRRFQNAPREALAQTVL R D I Y R R 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 2 0 0 9 0 1135.6026 Q99829;B0QZ18;F2Z2V0;H0Y524 Q99829 479 487 CPNE1 Copine-1 yes no 2 0.00087149 93.262 By MS/MS By MS/MS By MS/MS 1 2 1 1.0825 0.95474 9.8992 4 Median 0.89267 0.8452 NaN 1 0 Median 1.1174 0.95474 1.8622 2 0 Median 1.0509 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36039000 17996000 18044000 16267000 8661000 7606400 13626000 6149200 7477100 6145800 3185700 2960100 0 0 0 0 0 0 0 0 0 4508 559 4689 23144;23145;23146;23147 23600;23601;23602;23603 23600 4 DIVQFVPYRR DGGPLHTRSGQAAARDIVQFVPYRRFQNAP QAAARDIVQFVPYRRFQNAPREALAQTVLA R D I R R F 0 2 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 2 0 0 10 1 1291.7037 Q99829;B0QZ18;F2Z2V0;H0Y524 Q99829 479 488 CPNE1 Copine-1 yes no 2;3 9.9807E-05 88.948 By MS/MS 2 1.0328 1.0176 9.7381 2 Median 1.0328 1.0176 9.7381 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19095000 8836800 10258000 19095000 8836800 10258000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4509 559 4690 23148;23149 23604;23605;23606 23605 3 DIVTPEAWR ASQPVLKQRRKITSKDIVTPEAWRVMMSLK RKITSKDIVTPEAWRVMMSLKSGLLAESTW K D I W R V 1 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 9 0 1085.5506 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63 A0A3F2YNW7 1713 1721 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.0033292 82.452 By MS/MS 1 0.78226 0.86293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78226 0.86293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4735500 2556600 2178900 0 0 0 0 0 0 4735500 2556600 2178900 0 0 0 0 0 0 0 0 0 4510 449 4691 23150 23607 23607 1 DIVVLGVEK EAVKKGSTAVGVRGRDIVVLGVEKKSVAKL VGVRGRDIVVLGVEKKSVAKLQDERTVRKI R D I E K K 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 3 0 0 9 0 970.5699 O14818 O14818 39 47 PSMA7 Proteasome subunit alpha type-7 yes yes 2 0.0049104 59.245 By MS/MS 1 1.4807 1.2502 NaN 1 Median NaN NaN NaN 0 0 Median 1.4807 1.2502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3052100 1153600 1898500 0 0 0 3052100 1153600 1898500 0 0 0 0 0 0 0 0 0 0 0 0 4511 1497 4692 23151 23608;23609 23608 2 DIVVLGVEKK EAVKKGSTAVGVRGRDIVVLGVEKKSVAKL GVRGRDIVVLGVEKKSVAKLQDERTVRKIC R D I K K S 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 3 0 0 10 1 1098.6649 O14818 O14818 39 48 PSMA7 Proteasome subunit alpha type-7 yes yes 2 0.00059491 75.378 By matching By MS/MS By matching 1 1 1 1.2603 1.2821 18.686 3 Median 1.2603 1.2821 NaN 1 0 Median 1.1045 1.0102 NaN 1 0 Median 1.4297 1.4602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11755000 5155100 6599900 7423400 3234200 4189200 3631500 1654600 1976900 700080 266350 433740 0 0 0 0 0 0 0 0 0 4512 1497 4693 23152;23153;23154 23610 23610 1 DIYAYLR AEDGADPNLCSEYVKDIYAYLRQLEEEQAV NLCSEYVKDIYAYLRQLEEEQAVRPKYLLG K D I L R Q 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 912.47052 P14635;E9PC90;D6RHI0 P14635 173 179 CCNB1 G2/mitotic-specific cyclin-B1 yes no 2 0.040961 44.611 By MS/MS By matching 1 2 1.1318 0.99268 19.345 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.371 1.3761 NaN 1 0 Median 1.1212 0.98457 1.1597 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4525400 1899800 2625700 0 0 0 0 0 0 4139600 1724500 2415000 385870 175220 210640 0 0 0 0 0 0 4513 2007 4694 23155;23156;23157 23611 23611 1 DIYQDLNR GILITERKKADFSTKDIYQDLNRLLKGKKG KADFSTKDIYQDLNRLLKGKKGEQMNSAVL K D I N R L 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1035.4985 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 236 243 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0025421 107.43 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.1144 0.99065 9.8725 5 Median 0.97551 0.93977 NaN 1 0 Median 1.1144 0.94834 NaN 1 0 Median 0.9347 0.99065 NaN 1 0 Median 1.357 1.1514 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3837 1.1374 NaN 1 0 Median 39615000 19203000 20412000 12158000 6177600 5980500 3507600 1555700 1951900 16706000 8692600 8013100 6594000 2536700 4057300 0 0 0 649190 239990 409200 4514 2324 4695 23158;23159;23160;23161;23162 23612;23613;23614;23615;23616;23617 23615 6 DKAELISGPR AGSARTSPSSDKVQKDKAELISGPRQDSRI DKVQKDKAELISGPRQDSRIGKLLGFEWTD K D K P R Q 1 1 0 1 0 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 10 1 1084.5877 P38435;F8WDU9 P38435 20 29 GGCX Vitamin K-dependent gamma-carboxylase yes no 2 0.0017845 80.688 By MS/MS 1 0.80558 0.7723 NaN 1 Median NaN NaN NaN 0 0 Median 0.80558 0.7723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2094700 1007400 1087400 0 0 0 2094700 1007400 1087400 0 0 0 0 0 0 0 0 0 0 0 0 4515 2275 4696 23163 23618;23619 23618 2 DKAPVQPQQSPAAAPGGTDEKPSGK ______________________________ PAAAPGGTDEKPSGKERRDAGDKDKEQELS R D K G K E 4 0 0 2 0 3 1 3 0 0 0 3 0 0 5 2 1 0 0 1 0 0 25 2 2460.2245 Q13200;C9JPC0;F8WBS8 Q13200 7 31 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 3.1145E-08 42.454 By MS/MS 1 0.58799 0.57369 NaN 1 Median NaN NaN NaN 0 0 Median 0.58799 0.57369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2486400 1545900 940470 0 0 0 2486400 1545900 940470 0 0 0 0 0 0 0 0 0 0 0 0 4516 2796 4697 23164 23620;23621 23620 2 DKAVESLR PPLESLATVEETVVRDKAVESLRAISHEHS VEETVVRDKAVESLRAISHEHSPSDLEAHF R D K L R A 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 8 1 916.49779 P30153;C9J9C1;E9PNM7;P30154 P30153 106 113 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 0.045213 60.59 By matching By MS/MS 2 3 1.165 1.123 5.1406 5 Median 1.0665 1.0915 5.9238 2 0 Median 1.181 1.123 5.1609 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5811800 2450800 3361100 1869000 829470 1039500 3942800 1621300 2321600 0 0 0 0 0 0 0 0 0 0 0 0 4517 2190;2191 4698 23165;23166;23167;23168;23169 23622 23622 1 DKDAYSSFGSR KGFYDKDSSGWSSSKDKDAYSSFGSRSDSR SSSKDKDAYSSFGSRSDSRGKSSFFSDRGS K D K S R S 1 1 0 2 0 0 0 1 0 0 0 1 0 1 0 3 0 0 1 0 0 0 11 1 1231.5469 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;O15523;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;C9J8G5;A0A087WX09;C9J081 A0A2U3TZJ9 64 74 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.00019369 117.7 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 1 2 1.1082 1.1182 19.911 10 Median 1.0734 1.0852 18.836 2 0 Median 1.0799 0.98929 9.1938 2 0 Median 1.1255 1.1948 1.229 2 0 Median 0.77701 0.73675 NaN 1 0 Median 1.101 1.2168 NaN 1 0 Median 1.1478 1.0096 34.694 2 0 Median 33170000 15496000 17674000 6246800 3170100 3076700 7494200 3556000 3938200 13574000 6080700 7493400 1938700 941170 997570 2787900 1306000 1481900 1128100 442140 685940 4518 263 4699 23170;23171;23172;23173;23174;23175;23176;23177;23178;23179 23623;23624;23625;23626;23627;23628;23629;23630 23627 8 DKDDDEVFEK FRKLLLNRCQKEFEKDKDDDEVFEKKQKEM KEFEKDKDDDEVFEKKQKEMDEAATAEERG K D K E K K 0 0 0 4 0 0 2 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 10 1 1238.5303 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6 E7EX73 691 700 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0016058 104.79 By matching By MS/MS By matching By MS/MS 2 2 1 3 1.1364 1.0725 11.006 8 Median 1.0889 1.1204 10.756 2 0 Median 1.0669 1.0101 7.4199 2 0 Median 1.1391 1.3067 NaN 1 0 Median 1.1343 1.0805 10.124 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20837000 10142000 10694000 4131400 1838900 2292500 11042000 5256900 5785500 2132300 1252100 880190 3530400 1794200 1736200 0 0 0 0 0 0 4519 894 4700 23180;23181;23182;23183;23184;23185;23186;23187 23631;23632;23633;23634;23635 23633 5 DKDFAIDIIK DGKPENEFAFNAEFKDKDFAIDIIKSTHDH NAEFKDKDFAIDIIKSTHDHWKALVTKKTN K D K I K S 1 0 0 3 0 0 0 0 0 3 0 2 0 1 0 0 0 0 0 0 0 0 10 1 1176.639 Q15181 Q15181 212 221 PPA1 Inorganic pyrophosphatase yes yes 2 0.0019493 76.221 By MS/MS By MS/MS By matching 1 1 1 1.0276 1.0746 86.41 3 Median NaN NaN NaN 0 0 Median 0.72245 0.65046 NaN 1 1 Median 1.0276 1.0746 NaN 1 0 Median 3.5762 3.5011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19923000 11052000 8870900 0 0 0 12585000 7343600 5241500 7174100 3655200 3518900 163690 53184 110500 0 0 0 0 0 0 4520 2934 4701 23188;23189;23190 23636;23637 23636 2 DKDNFWMTR HMVFLGGAVLADIMKDKDNFWMTRQEYQEK LADIMKDKDNFWMTRQEYQEKGVRVLEKLG K D K T R Q 0 1 1 2 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 9 1 1211.5393 P61160;F5H6T1 P61160 367 375 ACTR2 Actin-related protein 2 yes no 2 0.003634 99.136 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.96067 0.93288 14.392 4 Median 0.92318 0.98908 NaN 1 0 Median 1.1715 1.0949 NaN 1 0 Median 0.68999 0.78527 NaN 1 0 Median 0.99968 0.87987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18969000 10204000 8765000 6588300 3431500 3156800 1641800 736540 905220 9984500 5654500 4330100 754290 381390 372910 0 0 0 0 0 0 4521 2546 4702 23191;23192;23193;23194 23638;23639;23640 23639 3 DKDPILR GRMEEADALIESLCRDKDPILRRSGMYTVA ALIESLCRDKDPILRRSGMYTVAMAYCGSG R D K L R R 0 1 0 2 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 7 1 855.48142 A0A087WW66;Q99460;H7C378 A0A087WW66 573 579 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.045685 83.614 By MS/MS By matching 1 1 0.52145 0.54653 53.345 2 Median NaN NaN NaN 0 0 Median 0.85596 0.79695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31766 0.3748 NaN 1 0 Median NaN NaN NaN 0 0 Median 9082200 5018100 4064100 0 0 0 8992800 4947500 4045300 0 0 0 0 0 0 89390 70575 18816 0 0 0 4522 54 4703 23195;23196 23641 23641 1 DKDPPIPVAK KQFAPEYEKIANILKDKDPPIPVAKIDATS ANILKDKDPPIPVAKIDATSASVLASRFDV K D K A K I 1 0 0 2 0 0 0 0 0 1 0 2 0 0 3 0 0 0 0 1 0 0 10 1 1078.6023 P13667;A0A499FI48 P13667 110 119 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.029276 60.019 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.65255 0.6764 13.367 5 Median 0.64857 0.66822 NaN 1 0 Median 0.85256 0.81089 13.787 2 1 Median 0.59495 0.6764 NaN 1 0 Median 0.65255 0.63748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21351000 11772000 9578700 5694100 3466800 2227300 12523000 6485200 6037900 2374700 1383300 991320 759020 436840 322180 0 0 0 0 0 0 4523 1993 4704 23197;23198;23199;23200;23201 23642;23643;23644;23645;23646;23647 23644 6 DKDTGELVALKK GIIGEGTYGQVYKAKDKDTGELVALKKVRL KAKDKDTGELVALKKVRLDNEKEGFPITAI K D K K K V 1 0 0 2 0 0 1 1 0 0 2 3 0 0 0 0 1 0 0 1 0 0 12 2 1315.7347 Q9NYV4;J3QSD7;A0A590UJE9 Q9NYV4 746 757 CDK12 Cyclin-dependent kinase 12 yes no 3 0.014569 26.124 By matching By MS/MS 2 1 1.182 1.1674 9.7339 3 Median NaN NaN NaN 0 0 Median 1.2054 1.2597 10.757 2 0 Median 0.97872 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828600 1294600 1534000 0 0 0 935880 357850 578030 1892700 936740 955950 0 0 0 0 0 0 0 0 0 4524 4180 4705 23202;23203;23204 23648 23648 1 DKEDQWIR EIRYILDGSGYFDVRDKEDQWIRIFMEKGD SGYFDVRDKEDQWIRIFMEKGDMVTLPAGI R D K I R I 0 1 0 2 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 8 1 1088.5251 Q9BV57;A0A0G2JQN5 Q9BV57 109 116 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 2 0.024183 77.674 By matching By MS/MS 1 1 0.96106 0.89874 2.7499 2 Median 0.88928 0.88143 NaN 1 0 Median 1.0386 0.91638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7751100 3889800 3861400 5360300 2676100 2684100 2390900 1213600 1177200 0 0 0 0 0 0 0 0 0 0 0 0 4525 3846 4706 23205;23206 23649 23649 1 DKEIELVIHR LNREQELREEIRKGRDKEIELVIHRLEADM IRKGRDKEIELVIHRLEADMALAKEESEKA R D K H R L 0 1 0 1 0 0 2 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1250.6983 Q9UPN4;I3L2X7;I3L2J8;I3L316;I3L4M5 Q9UPN4 897 906 CEP131 Centrosomal protein of 131 kDa yes no 3 0.00016541 91.855 By matching By matching By MS/MS By matching 1 1 1 1 1.004 0.95874 22.928 4 Median 0.87423 0.90396 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59187 0.67147 NaN 1 0 Median 1.1925 1.146 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.153 1.0168 NaN 1 0 Median 7528900 4050700 3478200 952120 560500 391620 0 0 0 3440100 2134700 1305400 2757900 1223600 1534300 0 0 0 378830 131990 246840 4526 4355 4707 23207;23208;23209;23210 23650;23651 23650 2 DKELEGLQVK SNKALLEMAEEKTVRDKELEGLQVKIQRLE EKTVRDKELEGLQVKIQRLEKLCRALQTER R D K V K I 0 0 0 1 0 1 2 1 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1157.6292 P40222 P40222 454 463 TXLNA Alpha-taxilin yes yes 2 0.002872 97.565 By matching By MS/MS 1 1 1.1243 1.0919 3.938 2 Median NaN NaN NaN 0 0 Median 1.0999 1.0619 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1492 1.1227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3804900 1758700 2046100 0 0 0 737560 306870 430690 0 0 0 3067300 1451800 1615500 0 0 0 0 0 0 4527 2284 4708 23211;23212 23652;23653 23652 2 DKELVASAGLDR LRTHKDYVKALAYAKDKELVASAGLDRQIF YAKDKELVASAGLDRQIFLWDVNTLTALTA K D K D R Q 2 1 0 2 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1272.6674 Q8TAF3;C9JC24 Q8TAF3 128 139 WDR48 WD repeat-containing protein 48 yes no 2 0.00011989 96.89 By matching By matching By MS/MS 1 1 1 1.2972 1.2655 52.113 3 Plateau 1.8193 1.8277 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62702 0.66744 NaN 1 0 Median 0.92487 0.87621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501000 2473700 3027300 2373400 924420 1449000 0 0 0 1039600 532180 507440 2087900 1017100 1070900 0 0 0 0 0 0 4528 3453 4709 23213;23214;23215 23654 23654 1 DKESGMSSLYVFNPIFGK TAHFPHPPQCTLLVKDKESGMSSLYVFNPI SGMSSLYVFNPIFGKWSQVAPPVLKRPILQ K D K G K W 0 0 1 1 0 0 1 2 0 1 1 2 1 2 1 3 0 0 1 1 0 0 18 1 2017.9819 Q8N766 Q8N766 593 610 EMC1 ER membrane protein complex subunit 1 yes yes 3 0.00066922 34.094 By MS/MS By matching 3 1 0.985 1.0568 35.13 4 Median 1.0884 1.1792 14.541 3 0 Median 0.61092 0.57646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119100 2701700 2417500 4428100 2339200 2088900 691030 362510 328520 0 0 0 0 0 0 0 0 0 0 0 0 4529 3392 4710 23216;23217;23218;23219 23655;23656;23657 23655 3 DKETGGILR IKALNHEIEELEKRKDKETGGILRSLEDAL ELEKRKDKETGGILRSLEDALAEAQRVNTK K D K L R S 0 1 0 1 0 0 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 987.53491 O95347 O95347 289 297 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.015562 80.165 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1 1.0536 0.98066 16.044 6 Median 1.1306 1.1694 NaN 1 0 Median 0.98182 0.91333 NaN 1 1 Median 1.1609 1.3273 NaN 1 0 Median 0.95127 0.91418 NaN 1 0 Median 0.84763 0.89659 NaN 1 0 Median 1.1828 1.052 NaN 1 0 Median 20413000 10161000 10252000 1110400 477090 633280 9658500 4879200 4779200 1010300 461060 549220 1277100 587370 689710 5421700 2807100 2614600 1934800 948670 986170 4530 1766 4711 23220;23221;23222;23223;23224;23225;23226 23658;23659;23660 23658 3 DKEVEFGGPAPR GLPGSGKTHVAKLIRDKEVEFGGPAPRVLS LIRDKEVEFGGPAPRVLSLDDYFITEVEKE R D K P R V 1 1 0 1 0 0 2 2 0 0 0 1 0 1 2 0 0 0 0 1 0 0 12 1 1300.6412 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1856 1867 YLPM1 YLP motif-containing protein 1 yes no 2;3 1.7603E-07 101.11 By MS/MS By MS/MS By MS/MS 3 1 2 0.69721 0.82197 35.186 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69721 0.83604 45.448 3 0 Plateau 0.80951 0.78149 NaN 1 0 Median 0.76209 0.86386 NaN 1 0 Median NaN NaN NaN 0 0 Median 20027000 11671000 8356100 0 0 0 0 0 0 11365000 6805200 4559500 844640 491280 353360 7817800 4374600 3443200 0 0 0 4531 2395 4712 23227;23228;23229;23230;23231;23232 23661;23662;23663;23664;23665;23666;23667 23665 7 DKEVGNLYDMFHTR ARVCEVDNELRICARDKEVGNLYDMFHTRN RDKEVGNLYDMFHTRNSLHRRAYQHKVGNI R D K T R N 0 1 1 2 0 0 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 0 14 1 1723.7988 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90 Q9Y3Z3 353 366 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 3 9.2214E-05 72.321 By MS/MS 1 0.90399 0.90721 NaN 1 Median 0.90399 0.90721 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8726700 4823500 3903200 8726700 4823500 3903200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4532 4436 4713 23233 23668 23668 1 DKFNECGHVLYADIK FVRNLPFDFTWKMLKDKFNECGHVLYADIK DKFNECGHVLYADIKMENGKSKGCGVVKFE K D K I K M 1 0 1 2 1 0 1 1 1 1 1 2 0 1 0 0 0 0 1 1 0 0 15 1 1807.8563 A0A087X0X3;P52272 A0A087X0X3 671 685 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3;4 1.6135E-09 109 By matching By MS/MS 1 3 0.78813 0.88141 22.976 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.31 1.338 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7948 0.88849 5.6994 3 0 Plateau NaN NaN NaN 0 0 Median 92928000 50549000 42378000 0 0 0 0 0 0 2958500 1131100 1827400 0 0 0 89969000 49418000 40551000 0 0 0 4533 116 4714 23234;23235;23236;23237 23669;23670;23671;23672;23673 23672 5 DKFQETSDEFEAAR AAPNMKAMEKLESVRDKFQETSDEFEAARK RDKFQETSDEFEAARKRAKKAKQAFEQIKK R D K A R K 2 1 0 2 0 1 3 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 14 1 1671.7376 Q14683;G8JLG1;V9GY57 Q14683 1036 1049 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 1.9715E-31 206.11 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1.0676 1.0306 7.8314 11 Median 1.0419 1.0494 6.886 2 0 Median 1.2215 1.1596 NaN 1 0 Median 0.88921 1.009 3.5534 2 0 Median 1.1126 1.0741 5.8454 2 0 Median 0.80943 0.92067 6.8441 2 0 Median 1.167 1.0157 5.3058 2 0 Median 148840000 77529000 71306000 14892000 7255700 7636300 1811100 760050 1051000 82558000 44372000 38187000 10914000 4922300 5991300 34712000 18522000 16190000 3948500 1697400 2251200 4534 2889 4715 23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248 23674;23675;23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687;23688;23689;23690 23679 17 DKFQETSDEFEAARK AAPNMKAMEKLESVRDKFQETSDEFEAARK DKFQETSDEFEAARKRAKKAKQAFEQIKKE R D K R K R 2 1 0 2 0 1 3 0 0 0 0 2 0 2 0 1 1 0 0 0 0 0 15 2 1799.8326 Q14683;G8JLG1;V9GY57 Q14683 1036 1050 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.0017414 50.079 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4535 2889 4716 23249 23691 23691 1 DKFSFDLGK WLLDGTKFDSSLDRKDKFSFDLGKGEVIKA SSLDRKDKFSFDLGKGEVIKAWDIAIATMK K D K G K G 0 0 0 2 0 0 0 1 0 0 1 2 0 2 0 1 0 0 0 0 0 0 9 1 1055.5288 Q02790;F5H1U3 Q02790 75 83 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0046326 87.308 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0958 1.0953 10.6 5 Median 1.0453 0.99595 NaN 1 0 Median 1.1455 1.0336 12.961 2 0 Median 1.1788 1.2333 NaN 1 0 Median 1.0958 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56458000 28034000 28424000 17438000 8383700 9053900 30495000 15745000 14750000 6263700 2812700 3451000 2261400 1093100 1168400 0 0 0 0 0 0 4536 2701 4717 23250;23251;23252;23253;23254 23692;23693;23694;23695;23696 23695 5 DKFSFDLGKGEVIK WLLDGTKFDSSLDRKDKFSFDLGKGEVIKA KDKFSFDLGKGEVIKAWDIAIATMKVGEVC K D K I K A 0 0 0 2 0 0 1 2 0 1 1 3 0 2 0 1 0 0 0 1 0 0 14 2 1581.8403 Q02790;F5H1U3 Q02790 75 88 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 4.555E-05 150.69 By MS/MS By matching 1 1 1.0177 0.97656 0.69584 2 Median 0.99906 0.97176 NaN 1 0 Median 1.0367 0.98137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17817000 8154500 9662700 17434000 7959500 9474400 383330 194980 188350 0 0 0 0 0 0 0 0 0 0 0 0 4537 2701 4718 23255;23256 23697;23698 23697 2 DKFSPFPVQDRPESSLVFK LPPQEDATASPPRQKDKFSPFPVQDRPESS PFPVQDRPESSLVFKDTLRTPPRERSGAGS K D K F K D 0 1 0 2 0 1 1 0 0 0 1 2 0 3 3 3 0 0 0 2 0 0 19 2 2222.1372 Q9UQ35 Q9UQ35 1185 1203 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.00023084 36.856 By MS/MS By matching By matching 1 1 1 0.5624 0.61203 7.5632 3 Median 0.5624 0.61203 NaN 1 0 Median 0.65304 0.69574 NaN 1 0 Median 0.45871 0.60872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23164000 14131000 9033400 18437000 11052000 7384600 1839700 1098300 741440 2887400 1980100 907350 0 0 0 0 0 0 0 0 0 4538 4359 4719 23257;23258;23259 23699 23699 1 DKGDEEEEGEEKLEEK QPDVKEEEEEKEEEKDKGDEEEEGEEKLEE KGDEEEEGEEKLEEKQKSDAEEDGGTVSQE K D K E K Q 0 0 0 2 0 0 8 2 0 0 1 3 0 0 0 0 0 0 0 0 0 0 16 2 1891.8171 P27824 P27824 536 551 CANX Calnexin yes yes 3 0.0010994 35.757 By matching By MS/MS 1 1 1.1084 1.0822 10.718 2 Median 1.0267 1.0032 NaN 1 0 Median 1.1965 1.1674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4126800 1870300 2256500 973770 580110 393650 3153000 1290100 1862900 0 0 0 0 0 0 0 0 0 0 0 0 4539 2158 4720 23260;23261 23700;23701 23700 2 DKGETIQGLR SAVAAIRTLLEFLKRDKGETIQGLRANLTS EFLKRDKGETIQGLRANLTSAIETLCGVDS R D K L R A 0 1 0 1 0 1 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1115.5935 Q14232;F5H0D0;H0YGG4 Q14232 37 46 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2 0.0064057 66.27 By matching By MS/MS By MS/MS 1 1 1 1.2508 1.1338 22.471 3 Median 1.01 0.99762 NaN 1 0 Median 1.2508 1.1338 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6367 1.5445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4858100 2159300 2698900 1177300 586150 591120 2190300 963270 1227000 0 0 0 1490600 609870 880730 0 0 0 0 0 0 4540 2866 4721 23262;23263;23264 23702;23703;23704 23703 3 DKGEYTLVVK KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH SYLLKDKGEYTLVVKWGDEHIPGSPYRVVV K D K V K W 0 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 2 0 0 10 1 1150.6234 P21333;Q60FE5;A0A087WWY3 P21333 2622 2631 FLNA Filamin-A no no 2 0.00019395 139.43 By MS/MS By MS/MS By MS/MS 2 2 1 1.0172 0.97802 15.719 5 Median 1.1749 1.2008 16.14 2 0 Median 0.97475 0.93685 6.0817 2 1 Median NaN NaN NaN 0 0 Median 0.94795 0.96306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 197820000 98700000 99115000 33001000 14146000 18855000 159220000 81869000 77350000 0 0 0 5595300 2685200 2910000 0 0 0 0 0 0 4541 2088;3120 4722 23265;23266;23267;23268;23269 23705;23706;23707;23708;23709;23710;23711;23712;23713 23706 9 DKGFGFIR LFEKYGKAGEVFIHKDKGFGFIRLETRTLA GEVFIHKDKGFGFIRLETRTLAEIAKVELD K D K I R L 0 1 0 1 0 0 0 2 0 1 0 1 0 2 0 0 0 0 0 0 0 0 8 1 938.4974 Q15233;H7C367;C9JYS8;C9IZL7 Q15233 108 115 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.010834 124.34 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.4161 1.3288 20.681 5 Median 1.6605 1.6674 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99414 1.127 NaN 1 0 Median 1.4592 1.3803 5.381 2 0 Median 0.96851 0.98103 NaN 1 0 Median NaN NaN NaN 0 0 Median 241710000 113240000 128480000 6344000 2029100 4314900 0 0 0 126850000 63288000 63564000 52024000 20025000 31999000 56493000 27894000 28599000 0 0 0 4542 2935 4723 23270;23271;23272;23273;23274 23714;23715;23716;23717;23718;23719 23717 6 DKGNFYEASDWFK PNYVDCYLRLGAMARDKGNFYEASDWFKEA ARDKGNFYEASDWFKEALQINQDHPDAWSL R D K F K E 1 0 1 2 0 0 1 1 0 0 0 2 0 2 0 1 0 1 1 0 0 0 13 1 1605.71 Q6PD62 Q6PD62 543 555 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.068228 33.886 By MS/MS By matching 1 1 0.94084 0.9826 14.15 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94842 1.086 NaN 1 0 Median 0.93331 0.88905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4368700 2273000 2095700 0 0 0 0 0 0 3966800 2077000 1889900 401860 196000 205860 0 0 0 0 0 0 4543 3168 4724 23275;23276 23720 23720 1 DKHLEFSSLR CDLMDGRDAFLTLARDKHLEFSSLRRAQWS LTLARDKHLEFSSLRRAQWSTMCMLVELHT R D K L R R 0 1 0 1 0 0 1 0 1 0 2 1 0 1 0 2 0 0 0 0 0 0 10 1 1230.6357 Q09472 Q09472 1636 1645 EP300 Histone acetyltransferase p300 yes yes 3 0.012434 31.431 By MS/MS 2 0.96834 1.1319 13.95 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96834 1.1319 13.95 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3685500 1922700 1762800 0 0 0 0 0 0 3685500 1922700 1762800 0 0 0 0 0 0 0 0 0 4544 2748 4725 23277;23278 23721 23721 1 DKILGATIENSR SRDYSHYYTTIQDLRDKILGATIENSRIVL DLRDKILGATIENSRIVLQIDNARLAADDF R D K S R I 1 1 1 1 0 0 1 1 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 1 1315.7096 CON__P08727;P08727 CON__P08727 139 150 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 1.9216E-05 128.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 3 1.2689 1.2417 22.179 11 Median 1.0999 1.1783 10.204 2 1 Median 1.4839 1.3887 NaN 1 1 Median 0.98128 1.1185 7.3951 2 0 Median 1.5556 1.3571 6.941 3 2 Median NaN NaN NaN 0 0 Median 1.5302 1.3731 39.375 3 1 Plateau 85589000 40803000 44786000 8579700 3563000 5016700 2145200 630080 1515200 40964000 21542000 19422000 13009000 5444300 7564600 0 0 0 20891000 9623700 11267000 + 4545 752 4726 23279;23280;23281;23282;23283;23284;23285;23286;23287;23288;23289;23290 23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733;23734 23726 13 DKINNWIVQLSK ERRRAQHNEVERRRRDKINNWIVQLSKIIP RRRDKINNWIVQLSKIIPDCNADNSKTGAV R D K S K I 0 0 2 1 0 1 0 0 0 2 1 2 0 0 0 1 0 1 0 1 0 0 12 1 1456.8038 M0QXT0;Q15853;M0QYU7;B4DLJ1;M0R1C6;H0YD59;E9PME6;B1AQP1;P22415 M0QXT0 105 116 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 yes no 2 0.02062 43.77 By MS/MS By matching 2 1 0.93255 1.0162 26.743 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93983 1.0055 1.4925 2 0 Median 0.72087 0.63298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6892700 3492400 3400300 0 0 0 0 0 0 6771700 3416700 3355000 120990 75731 45259 0 0 0 0 0 0 4546 1411 4727 23291;23292;23293 23735 23735 1 DKISSSSFIEPIFPTSK APHEEYIQRHLNIVRDKISSSSFIEPIFPT ISSSSFIEPIFPTSKISSVEGKKIPTESVK R D K S K I 0 0 0 1 0 0 1 0 0 3 0 2 0 2 2 5 1 0 0 0 0 0 17 1 1881.9724 Q6ZXV5 Q6ZXV5 817 833 TMTC3 Transmembrane and TPR repeat-containing protein 3 yes yes 3 0.01094 23.329 By matching By MS/MS 1 1 0.58839 0.61101 45.08 2 Median NaN NaN NaN 0 0 Median 0.46801 0.44423 NaN 1 0 Median 0.73974 0.8404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4625000 2539500 2085500 0 0 0 728890 427450 301440 3896100 2112100 1784000 0 0 0 0 0 0 0 0 0 4547 3204 4728 23294;23295 23736;23737 23737 2 DKLAQQQAAAAAAAAAAASQQGSAK AVMPDVVQTRQQAYRDKLAQQQAAAAAAAA AAAAAAAASQQGSAKNGENTANGEENGAHT R D K A K N 13 0 0 1 0 5 0 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 25 1 2297.1724 A0A0D9SF63;Q9BZK7;C9JLJ1;C9JCK0;C9JBN1;A0A0D9SF25;A0A1B0GUU2;F8W9D8;C9IYU9 A0A0D9SF63 101 125 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 3 4.1954E-22 97.542 By MS/MS 1 1.1436 1.1919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1436 1.1919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18902000 7913000 10989000 0 0 0 0 0 0 18902000 7913000 10989000 0 0 0 0 0 0 0 0 0 4548 265 4729 23296 23738 23738 1 DKLDETGNSLK LPVKGFRSYVDMYLKDKLDETGNSLKVIHE MYLKDKLDETGNSLKVIHEQVNHRWEVCLT K D K L K V 0 0 1 2 0 0 1 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 11 1 1218.6092 P11388 P11388 277 287 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0099465 77.192 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0784 1.1487 21.204 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90191 1.0338 NaN 1 0 Median 0.97195 0.90618 NaN 1 0 Median 1.1966 1.2764 NaN 1 1 Median 1.6324 1.4567 NaN 1 0 Median 7503200 3133000 4370200 0 0 0 0 0 0 1835400 839180 996260 734250 317910 416340 2956600 1353500 1603100 1976900 622410 1354500 4549 1963 4730 23297;23298;23299;23300 23739;23740;23741 23740 3 DKLDETGVALK LPVNGFRSYVDLYVKDKLDETGVALKVIHE LYVKDKLDETGVALKVIHELANERWDVCLT K D K L K V 1 0 0 2 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1187.6398 Q02880;E9PCY5 Q02880 298 308 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.0002685 110.53 By MS/MS By MS/MS By MS/MS 1 1 1 0.91186 0.93279 16.605 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71701 0.82945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1597 1.049 NaN 1 0 Median 10490000 6651900 3838600 0 0 0 0 0 0 9426700 6141300 3285400 0 0 0 0 0 0 1063800 510620 553170 4550 2704 4731 23301;23302;23303 23742;23743;23744;23745 23744 4 DKLDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC R D K V K E 0 0 2 4 0 0 2 1 0 0 5 2 0 0 1 2 0 0 0 2 0 0 21 1 2312.1747 Q96AG4;I3L223 Q96AG4 13 33 LRRC59 Leucine-rich repeat-containing protein 59 yes no 3 0.031818 21.006 By MS/MS 1 1.482 1.5481 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.482 1.5481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10425000 4567400 5857900 0 0 0 0 0 0 10425000 4567400 5857900 0 0 0 0 0 0 0 0 0 4551 3600 4732 23304 23746 23746 1 DKLDILGAAETGSGK APTPIQALTLAPAIRDKLDILGAAETGSGK DKLDILGAAETGSGKTLAFAIPMIHAVLQW R D K G K T 2 0 0 2 0 0 1 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1473.7675 G3V529;Q9GZR7 G3V529 186 200 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 9.1177E-10 116.71 By MS/MS By MS/MS 2 1 0.87144 0.97632 6.3801 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89313 1.0201 8.281 2 2 Median NaN NaN NaN 0 0 Median 0.87144 0.97632 NaN 1 0 Median NaN NaN NaN 0 0 Median 21665000 11146000 10519000 0 0 0 0 0 0 16167000 8036500 8130900 0 0 0 5497700 3109300 2388500 0 0 0 4552 1118 4733 23305;23306;23307 23747;23748;23749 23748 3 DKLEEILR VEEPSKKGALKEEQRDKLEEILRGLTPRKN ALKEEQRDKLEEILRGLTPRKNDIGDAMVF R D K L R G 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1014.571 O15042;E7ET15 O15042 540 547 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.016269 96.19 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 4 1 1.2027 1.2379 21.798 12 Median 1.1256 1.117 7.3047 2 0 Median 1.1565 1.0368 23.949 2 0 Median 1.218 1.3074 2.4874 2 0 Median 1.083 1.0408 NaN 1 0 Median 1.465 1.6001 18.789 4 1 Median 1.2323 1.0733 NaN 1 0 Median 83728000 34248000 49481000 8229700 3469300 4760400 7631600 3245500 4386000 13552000 5992600 7559300 2495000 1280300 1214700 50026000 19483000 30543000 1794300 776780 1017600 4553 1515 4734 23308;23309;23310;23311;23312;23313;23314;23315;23316;23317;23318;23319 23750;23751;23752;23753;23754;23755 23753 6 DKLEQAQNELSAWK NLFFLKMKGELEQTKDKLEQAQNELSAWKF KDKLEQAQNELSAWKFTPDSQTGKKLMAKC K D K W K F 2 0 1 1 0 2 2 0 0 0 2 2 0 0 0 1 0 1 0 0 0 0 14 1 1658.8264 Q15007;A0A087X1R4 Q15007 133 146 WTAP Pre-mRNA-splicing regulator WTAP yes no 3 0.0043323 31.776 By MS/MS 1 1.1833 1.241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1833 1.241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5826400 2330000 3496400 0 0 0 0 0 0 5826400 2330000 3496400 0 0 0 0 0 0 0 0 0 4554 2910 4735 23320 23756 23756 1 DKLESEMEDAYHEHQANLLR KQQREQVEKNMKDAKDKLESEMEDAYHEHQ EMEDAYHEHQANLLRQDLMRRQEELRRMEE K D K L R Q 2 1 1 2 0 1 4 0 2 0 3 1 1 0 0 1 0 0 1 0 0 0 20 1 2427.1125 P23246;H0Y9K7 P23246 517 536 SFPQ Splicing factor, proline- and glutamine-rich yes no 2;3;4;5 1.8185E-33 193.22 By matching By MS/MS By MS/MS By MS/MS By matching 3 18 14 6 4 1.0682 1.1387 16.718 45 Median NaN NaN NaN 0 0 Median 1.2236 1.2204 4.7611 3 0 Median 0.94748 1.0632 18.511 18 0 Median 1.2934 1.2008 12.326 14 0 Median 1.0334 1.1381 14.198 6 1 Median 1.2882 1.1231 10.685 4 0 Median 1502800000 708590000 794190000 0 0 0 7357200 3198600 4158600 1224400000 588740000 635650000 170960000 69333000 101620000 93243000 44527000 48716000 6839600 2788800 4050800 4555 2107 4736;4737 23321;23322;23323;23324;23325;23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338;23339;23340;23341;23342;23343;23344;23345;23346;23347;23348;23349;23350;23351;23352;23353;23354;23355;23356;23357;23358;23359;23360;23361;23362;23363;23364;23365 23757;23758;23759;23760;23761;23762;23763;23764;23765;23766;23767;23768;23769;23770;23771;23772;23773;23774;23775;23776;23777;23778;23779;23780;23781;23782;23783;23784;23785;23786;23787;23788;23789;23790;23791;23792;23793;23794;23795 23773 867 39 DKLNINPEDGMADYSDPSYVK PKPVINSTPGRTPLRDKLNINPEDGMADYS PEDGMADYSDPSYVKQMERESREHLRLGLL R D K V K Q 1 0 2 4 0 0 1 1 0 1 1 2 1 0 2 2 0 0 2 1 0 0 21 1 2370.0686 Q99459 Q99459 446 466 CDC5L Cell division cycle 5-like protein yes yes 3 2.457E-09 59.975 By matching By MS/MS By matching 1 2 2 0.76523 0.79115 12.823 5 Median 0.87099 0.92146 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69649 0.79502 13.352 2 0 Median 0.74956 0.73142 11.102 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26955000 15804000 11151000 1925500 1148800 776700 0 0 0 24325000 14304000 10021000 704680 351220 353460 0 0 0 0 0 0 4556 3745 4738;4739 23366;23367;23368;23369;23370 23796;23797;23798;23799 23797 1818 4 DKLNNLVLFDK GGKAKKKKWSKGKVRDKLNNLVLFDKATYD GKVRDKLNNLVLFDKATYDKLCKEVPNYKL R D K D K A 0 0 2 2 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 1 0 0 11 1 1317.7293 P62851 P62851 42 52 RPS25 40S ribosomal protein S25 yes yes 2;3 0.00015942 155 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.23 1.1538 10.379 9 Median 1.1298 1.1213 1.7418 2 0 Median 1.2464 1.1025 5.6032 2 0 Median 1.2108 1.2211 0.37574 2 0 Median 1.2837 1.1539 0.012788 2 0 Median 1.3247 1.523 NaN 1 0 Median NaN NaN NaN 0 0 Median 274030000 127220000 146810000 225900000 106410000 119490000 22137000 10009000 12128000 16823000 7070500 9752300 3190900 1399000 1791900 5978700 2332400 3646300 0 0 0 4557 2600 4740 23371;23372;23373;23374;23375;23376;23377;23378;23379 23800;23801;23802;23803;23804;23805;23806;23807;23808;23809;23810;23811;23812 23810 13 DKLNPPTPSIYLENKR PPPRPPSSPYPPLPKDKLNPPTPSIYLENK KLNPPTPSIYLENKRDAFFPPLHQFCTNPN K D K K R D 0 1 2 1 0 0 1 0 0 1 2 2 0 0 3 1 1 0 1 0 0 0 16 2 1884.0105 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248;F5GWV3;H0Y5J3;H0Y6I7 O15550 934 949 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 3 4.0606E-10 118.31 By MS/MS By matching 1 1 0.60974 0.6886 32.499 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48024 0.54722 NaN 1 0 Median 0.77415 0.8665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8024900 5248400 2776500 0 0 0 0 0 0 7572300 5015500 2556900 452580 232960 219620 0 0 0 0 0 0 4558 111 4741 23380;23381 23813 23813 1 DKLPQSQLSHQDLQLVK LTAKQVLQHPWVTQKDKLPQSQLSHQDLQL LPQSQLSHQDLQLVKGAMAATYSALNSSKP K D K V K G 0 0 0 2 0 4 0 0 1 0 4 2 0 0 1 2 0 0 0 1 0 0 17 1 1976.0691 E9PGT3;Q15418;Q5SVM7 E9PGT3 668 684 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 3 7.0435E-06 67.416 By MS/MS By MS/MS 1 2 1.3529 1.3079 28.117 3 Median 0.78061 0.80368 NaN 1 0 Median 1.3529 1.3079 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9494700 5312600 4182100 6921500 4142000 2779500 2573200 1170600 1402700 0 0 0 0 0 0 0 0 0 0 0 0 4559 926 4742 23382;23383;23384 23814;23815 23814 2 DKLSELQLR QVGEHANDYAEIAAKDKLSELQLRVRQLVE AEIAAKDKLSELQLRVRQLVEQVEQIQKEQ K D K L R V 0 1 0 1 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 1 1100.619 Q9BVK6 Q9BVK6 159 167 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 0.00029642 144.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.175 1.0821 11.769 5 Median 1.0343 1.0753 NaN 1 0 Median 1.175 1.0821 NaN 1 1 Median 1.3188 1.3729 NaN 1 0 Median 1.1642 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3754 1.2227 NaN 1 0 Median 75515000 35232000 40283000 48275000 23351000 24924000 16748000 7473100 9274700 7680900 3359400 4321600 740950 307490 433460 0 0 0 2070700 741020 1329700 4560 3856 4743 23385;23386;23387;23388;23389 23816;23817;23818;23819;23820;23821 23819 6 DKLSGEYEK NDAKNAVEEYVYEMRDKLSGEYEKFVSEDD YVYEMRDKLSGEYEKFVSEDDRNSFTLKLE R D K E K F 0 0 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 1 0 0 0 9 1 1067.5135 P34932;A0A087WYC1 P34932 630 638 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.011801 71.614 By matching By MS/MS By matching By matching 2 2 1 1 1.1576 1.1882 9.8363 6 Median 1.1576 1.2183 1.6891 2 0 Median 1.1759 1.1136 7.3295 2 0 Median 1.2085 1.3781 NaN 1 0 Median 1.1215 1.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14014000 6252200 7762100 1720300 764970 955300 11739000 5252500 6486300 359530 148380 211160 195650 86329 109320 0 0 0 0 0 0 4561 2230 4744 23390;23391;23392;23393;23394;23395 23822 23822 1 DKLTELQLR QVGEHANNYPEIAAKDKLTELQLRARQLLD PEIAAKDKLTELQLRARQLLDQVEQIQKEQ K D K L R A 0 1 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 1 1114.6346 Q7Z7H5 Q7Z7H5 151 159 TMED4 Transmembrane emp24 domain-containing protein 4 yes yes 2 0.0031917 93.429 By MS/MS 1 0.64362 0.66999 NaN 1 Median 0.64362 0.66999 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33260000 21078000 12181000 33260000 21078000 12181000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4562 3258 4745 23396 23823 23823 1 DKLTVEELEQFQSK SSSIIATDNVLFTPRDKLTVEELEQFQSKK RDKLTVEELEQFQSKKFTLGKIPLKPPPLE R D K S K K 0 0 0 1 0 2 3 0 0 0 2 2 0 1 0 1 1 0 0 1 0 0 14 1 1692.857 O15504;C9JYA1 O15504 391 404 NUPL2 Nucleoporin-like protein 2 yes no 3 0.0083147 40.552 By MS/MS 1 0.68923 0.72348 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68923 0.72348 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4961000 2940400 2020600 0 0 0 0 0 0 4961000 2940400 2020600 0 0 0 0 0 0 0 0 0 4563 728 4746 23397 23824 23824 1 DKMEDIER GEKSRQLRDAQQDARDKMEDIERQVRELKT DAQQDARDKMEDIERQVRELKTKISAMKEE R D K E R Q 0 1 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 8 1 1034.4703 Q9UQE7 Q9UQE7 265 272 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.045213 69.825 By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 1 1.0358 1.0502 13.794 6 Median NaN NaN NaN 0 0 Median 1.4106 1.3188 NaN 1 1 Median 0.85392 0.97057 NaN 1 0 Median 1.1854 1.1392 NaN 1 0 Median 0.85113 0.95228 10.633 2 0 Median 1.2215 1.0743 NaN 1 0 Median 22726000 10304000 12422000 0 0 0 6381300 2407800 3973400 2715100 1363300 1351800 816340 401950 414380 12277000 5925800 6351600 536220 205330 330890 4564 4362 4747 23398;23399;23400;23401;23402;23403 23825;23826 23825 2 DKMMNGGHYTYSENRVEK EIGFGSKVTTHPLAKDKMMNGGHYTYSENR MNGGHYTYSENRVEKDGLILTSRGPGTSFE K D K E K D 0 1 2 1 0 0 2 2 1 0 0 2 2 0 0 1 1 0 2 1 0 0 18 2 2157.9572 Q99497;K7ELW0 Q99497 131 148 PARK7 Protein deglycase DJ-1 yes no 4 9.8301E-05 40.179 By MS/MS By MS/MS 1 1 1.1767 1.1306 2.2402 2 Median 1.0788 1.1487 NaN 1 0 Median 1.2835 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7300800 3210200 4090600 4955100 2199900 2755200 2345700 1010400 1335300 0 0 0 0 0 0 0 0 0 0 0 0 4565 3749 4748 23404;23405 23827;23828;23829 23827 3 DKNEQAFEEVFQNANFR EAILGQNAAYLGELKDKNEQAFEEVFQNAN NEQAFEEVFQNANFRSFIFRVRVKVETYND K D K F R S 2 1 3 1 0 2 3 0 0 0 0 1 0 3 0 0 0 0 0 1 0 0 17 1 2084.9552 P27694;I3L4R8 P27694 552 568 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 3.9607E-06 80.411 By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 1 1 0.97118 0.93749 20.709 7 Median 0.97118 0.97523 NaN 1 0 Median 0.95162 0.88083 NaN 1 0 Median 0.8693 0.92115 2.4876 2 0 Median 1.3137 1.2045 NaN 1 0 Median 1.3743 1.527 NaN 1 0 Median 1.093 0.87939 NaN 1 0 Median 10723000 5061000 5661700 6289400 3035800 3253600 712520 350580 361930 1933300 961950 971350 392630 167190 225440 1098900 427520 671420 295910 117910 178000 4566 2156 4749 23406;23407;23408;23409;23410;23411;23412 23830 23830 1 DKNFQWANTGAAVFGTQSVGTQSAGK DLASSNSGDFAFGSKDKNFQWANTGAAVFG AVFGTQSVGTQSAGKVGEDEDGSDEEVVHN K D K G K V 4 0 2 1 0 3 0 4 0 0 0 2 0 2 0 2 3 1 0 2 0 0 26 1 2669.2834 P49792 P49792 2867 2892 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 1.2039E-19 70.449 By matching By MS/MS By matching 1 2 1 1.1252 1.2077 11.808 4 Median 1.3763 1.395 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0552 1.2077 6.0367 2 0 Median 1.1393 1.0583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17917000 8616700 9300400 2321100 1235100 1086000 0 0 0 15398000 7292100 8106300 197680 89557 108130 0 0 0 0 0 0 4567 2401 4750 23413;23414;23415;23416 23831;23832;23833 23831 3 DKPDNFQLFQSPHGK VIWELLNHAQEHFGKDKPDNFQLFQSPHGK DKPDNFQLFQSPHGKDLLFKDSADGFLKIP K D K G K D 0 0 1 2 0 2 0 1 1 0 1 2 0 2 2 1 0 0 0 0 0 0 15 1 1756.8533 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 300 314 yes no 2;3 1.5795E-18 132.5 By MS/MS By MS/MS 3 1 0.077227 0.072303 28.919 4 Median 0.065275 0.061189 32.449 3 3 Median 0.091366 0.085437 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51656000 48480000 3175800 45539000 42747000 2791500 6117500 5733300 384270 0 0 0 0 0 0 0 0 0 0 0 0 + 4568 769 4751 23417;23418;23419;23420 23834;23835;23836;23837;23838 23836 5 DKPHVNVGTIGHVDHGK LCRGLAVEAKKTYVRDKPHVNVGTIGHVDH PHVNVGTIGHVDHGKTTLTAAITKILAEGG R D K G K T 0 0 1 2 0 0 0 3 3 1 0 2 0 0 1 0 1 0 0 3 0 0 17 1 1808.9282 P49411;H3BNU3 P49411 54 70 TUFM Elongation factor Tu, mitochondrial yes no 3 1.2884E-12 126.63 By MS/MS 2 1.0058 0.92985 7.2242 2 Median NaN NaN NaN 0 0 Median 1.0058 0.92985 7.2242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6501200 2795200 3706000 0 0 0 6501200 2795200 3706000 0 0 0 0 0 0 0 0 0 0 0 0 4569 2382 4752 23421;23422 23839;23840 23840 2 DKPLKDVIIADCGK MEVVRKVESTKTDSRDKPLKDVIIADCGKI RDKPLKDVIIADCGKIEVEKPFAIAKE___ R D K G K I 1 0 0 3 1 0 0 1 0 2 1 3 0 0 1 0 0 0 0 1 0 0 14 2 1570.8389 P23284 P23284 191 204 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3 0.0010333 38.995 By MS/MS By matching 2 1 1.0237 1.084 11.6 3 Median NaN NaN NaN 0 0 Median 1.195 1.1229 16.15 2 0 Median 0.96071 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9155500 4212200 4943300 0 0 0 5908400 2710800 3197500 3247100 1501300 1745800 0 0 0 0 0 0 0 0 0 4570 2109 4753 23423;23424;23425 23841 23841 1 DKPNPQLIYDDEIPSLK IPKYGLEGTVFFEEKDKPNPQLIYDDEIPS PNPQLIYDDEIPSLKIEDTVFHVFDKVKVK K D K L K I 0 0 1 3 0 1 1 0 0 2 2 2 0 0 3 1 0 0 1 0 0 0 17 1 1984.0153 Q9Y2L1;G3V1J5 Q9Y2L1 879 895 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.00017404 41.202 By matching By MS/MS By matching 1 2 1 0.67954 0.70874 11.108 4 Median NaN NaN NaN 0 0 Median 0.73969 0.70784 NaN 1 0 Median 0.66399 0.75944 9.591 2 0 Median 0.64996 0.61913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5791000 3556600 2234400 0 0 0 169870 95256 74617 5319100 3307800 2011300 302020 153580 148440 0 0 0 0 0 0 4571 4384 4754 23426;23427;23428;23429 23842 23842 1 DKPTETLLNTVK LIKDDMDLELVLMCKDKPTETLLNTVKDNL MCKDKPTETLLNTVKDNLPIQIQKLTEEKY K D K V K D 0 0 1 1 0 0 1 0 0 0 2 2 0 0 1 0 3 0 0 1 0 0 12 1 1357.7453 Q96SI9 Q96SI9 111 122 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.0004058 104.22 By MS/MS 2 0.79034 0.87956 4.005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79034 0.87956 4.005 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25423000 15165000 10258000 0 0 0 0 0 0 25423000 15165000 10258000 0 0 0 0 0 0 0 0 0 4572 3734 4755 23430;23431 23843;23844 23844 2 DKPVPLPAPEMTVK QSLPGPWEHPIQQERDKPVPLPAPEMTVKQ RDKPVPLPAPEMTVKQERLDFEETENKGIH R D K V K Q 1 0 0 1 0 0 1 0 0 0 1 2 1 0 4 0 1 0 0 2 0 0 14 1 1520.8273 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;H0YAH7 H7C128 462 475 BRD8 Bromodomain-containing protein 8 yes no 2;3 0.00024385 66.267 By MS/MS 2 0.5207 0.60105 9.8136 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5207 0.60105 9.8136 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18705000 12101000 6604100 0 0 0 0 0 0 18705000 12101000 6604100 0 0 0 0 0 0 0 0 0 4573 620 4756 23432;23433 23845;23846 23846 2 DKPVTGEQIEVFANK NDALLKENESPDVRRDKPVTGEQIEVFANK DKPVTGEQIEVFANKLGEQWKILAPYLEMK R D K N K L 1 0 1 1 0 1 2 1 0 1 0 2 0 1 1 0 1 0 0 2 0 0 15 1 1673.8625 A0A087WWS1;Q96FV9 A0A087WWS1 566 580 THOC1 THO complex subunit 1 yes no 2;3 0.00010847 61.641 By MS/MS By MS/MS 2 2 0.92025 0.95462 8.7437 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78903 0.87413 11.705 2 1 Median 0.98498 0.96223 0.36989 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48374000 25973000 22401000 0 0 0 0 0 0 40760000 22424000 18336000 7613700 3549200 4064500 0 0 0 0 0 0 4574 62 4757 23434;23435;23436;23437 23847;23848;23849;23850;23851;23852 23848 6 DKQMFHIITGPNMGGK QDEIAFIPNDVYFEKDKQMFHIITGPNMGG KQMFHIITGPNMGGKSTYIRQTGVIVLMAQ K D K G K S 0 0 1 1 0 1 0 3 1 2 0 2 2 1 1 0 1 0 0 0 0 0 16 1 1772.8702 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02 P43246 660 675 MSH2 DNA mismatch repair protein Msh2 yes no 3 0.054119 20.939 By MS/MS 1 1.0321 1.1799 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0321 1.1799 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4879200 2401800 2477400 0 0 0 0 0 0 4879200 2401800 2477400 0 0 0 0 0 0 0 0 0 4575 2324 4758 23438 23853 23853 1 DKQMLLFTHIR SEIMESLTKMYSIPKDKQMLLFTHIRLAHG SIPKDKQMLLFTHIRLAHGFSNHRKRLQAV K D K I R L 0 1 0 1 0 1 0 0 1 1 2 1 1 1 0 0 1 0 0 0 0 0 11 1 1400.7598 Q7Z6Z7 Q7Z6Z7 252 262 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 3.586E-05 124.12 By MS/MS By MS/MS 2 1 0.94161 0.98573 11.778 3 Median 0.9028 0.92998 8.2346 2 0 Median 1.1953 1.1104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33953000 17479000 16474000 26309000 13587000 12723000 7643900 3892700 3751200 0 0 0 0 0 0 0 0 0 0 0 0 4576 3253 4759 23439;23440;23441 23854;23855;23856;23857 23854 4 DKQNKPTGFALGSIEGR ESPLKHQHRCVAIFKDKQNKPTGFALGSIE QNKPTGFALGSIEGRVAIHYINPPNPAKDN K D K G R V 1 1 1 1 0 1 1 3 0 1 1 2 0 1 1 1 1 0 0 0 0 0 17 2 1816.9432 P78406;E9PQ57 P78406 223 239 RAE1 mRNA export factor yes no 2;3;4 3.5005E-15 132.59 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0913 1.0114 11.059 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90208 1.0114 14.923 3 0 Median 1.1131 1.1135 2.7972 2 0 Median 0.80185 0.93462 NaN 1 0 Median 1.1178 0.97964 NaN 1 0 Median 110680000 52787000 57895000 0 0 0 0 0 0 94367000 45179000 49189000 9151900 4235600 4916300 6328300 2962800 3365400 834400 409980 424430 4577 2645 4760 23442;23443;23444;23445;23446;23447;23448 23858;23859;23860;23861;23862;23863;23864;23865;23866 23858 9 DKRPLSGPDVGTPQPAGLASGAK KSSREGSGGPQESSRDKRPLSGPDVGTPQP DVGTPQPAGLASGAKLAAGRPFNTYPRADT R D K A K L 3 1 0 2 0 1 0 4 0 0 2 2 0 0 4 2 1 0 0 1 0 0 23 2 2218.1706 O96013 O96013 176 198 PAK4 Serine/threonine-protein kinase PAK 4 yes yes 3 8.7718E-17 73.546 By matching By MS/MS By MS/MS 1 1 2 0.48438 0.51994 13.537 4 Median 0.51743 0.56014 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40728 0.46448 NaN 1 0 Median 0.52423 0.54802 17.969 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15071000 9671000 5400300 3741400 2332800 1408600 0 0 0 7579100 4903600 2675400 3750900 2434600 1316300 0 0 0 0 0 0 4578 1807 4761 23449;23450;23451;23452 23867;23868;23869 23867 3 DKTEDENKQSFLDGGK KSESPDEANVGKHPKDKTEDENKQSFLDGG KTEDENKQSFLDGGKGHHLPSENLGKEPLD K D K G K G 0 0 1 3 0 1 2 2 0 0 1 3 0 1 0 1 1 0 0 0 0 0 16 2 1809.8381 Q8NFQ8 Q8NFQ8 84 99 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 3 0.024017 19.297 By matching By MS/MS 1 1 1.0715 1.0506 15.046 2 Median 1.167 1.1685 NaN 1 0 Median 0.98378 0.94456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4872500 2062900 2809600 2548500 1073900 1474600 2324000 989000 1335000 0 0 0 0 0 0 0 0 0 0 0 0 4579 3440 4762 23453;23454 23870 23870 1 DKTEKPDTVQLLTVK KKVFKFVGFKFTVKKDKTEKPDTVQLLTVK DKTEKPDTVQLLTVKKDEGEGAAGAGDHKD K D K V K K 0 0 0 2 0 1 1 0 0 0 2 3 0 0 1 0 3 0 0 2 0 0 15 2 1713.9513 Q02952 Q02952 188 202 AKAP12 A-kinase anchor protein 12 yes yes 3 7.1425E-05 73.296 By MS/MS By MS/MS By matching 3 3 1 0.85092 0.89198 28.578 7 Median 0.85092 0.89198 24.16 3 0 Median 0.84628 0.88156 16.494 3 0 Median 1.3842 1.7186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59208000 30626000 28582000 27368000 13248000 14120000 29878000 16585000 13293000 1962200 793430 1168700 0 0 0 0 0 0 0 0 0 4580 2705 4763 23455;23456;23457;23458;23459;23460;23461 23871;23872;23873 23872 3 DKTIIMWK ATTPQFPDMILSASRDKTIIMWKLTRDETN MILSASRDKTIIMWKLTRDETNYGIPQRAL R D K W K L 0 0 0 1 0 0 0 0 0 2 0 2 1 0 0 0 1 1 0 0 0 0 8 1 1033.563 P63244;D6RAC2;D6RHH4;D6REE5;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909 P63244 37 44 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.016825 89.046 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1525 1.1028 12.804 7 Median 1.1473 1.1028 NaN 1 0 Median 1.0638 0.95767 10.712 2 0 Median 1.1975 1.2506 5.8559 2 0 Median 1.263 1.109 10.956 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 247090000 115440000 131650000 128620000 59407000 69214000 49377000 23240000 26136000 35876000 16467000 19408000 33218000 16325000 16893000 0 0 0 0 0 0 4581 2624 4764;4765 23462;23463;23464;23465;23466;23467;23468 23874;23875;23876;23877;23878;23879;23880;23881;23882 23874 1288 9 DKTSDLVEEYFEAHSSSK SAPVGKETPSKRMKRDKTSDLVEEYFEAHS SDLVEEYFEAHSSSKVLTSDRTLQKLKRAK R D K S K V 1 0 0 2 0 0 3 0 1 0 1 2 0 1 0 4 1 0 1 1 0 0 18 1 2070.9382 Q13416 Q13416 234 251 ORC2 Origin recognition complex subunit 2 yes yes 3 3.9976E-06 50.883 By MS/MS By matching 1 1 1.1147 1.135 2.3845 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99396 1.116 NaN 1 0 Median 1.2501 1.1543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6355200 3062900 3292300 0 0 0 0 0 0 6184700 3006700 3177900 170530 56161 114370 0 0 0 0 0 0 4582 2813 4766 23469;23470 23883;23884 23883 2 DKTYSYLNKLPVK EPDGCKSGINCPIQKDKTYSYLNKLPVKSE QKDKTYSYLNKLPVKSEYPSV_________ K D K V K S 0 0 1 1 0 0 0 0 0 0 2 3 0 0 1 1 1 0 2 1 0 0 13 2 1567.861 G3V2V8;J3KMY5;H0YIZ1;G3V3E8;E7EMS2;G3V3D1;P61916 G3V2V8 104 116 NPC2 Epididymal secretory protein E1 yes no 3 0.0009232 46.481 By MS/MS 1 1.0572 1.1448 NaN 1 Median 1.0572 1.1448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6226300 2947200 3279100 6226300 2947200 3279100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4583 858 4767 23471 23885;23886 23886 2 DKVAGHSLGYGFVNYVTAK LFSSIGEVESAKLIRDKVAGHSLGYGFVNY GHSLGYGFVNYVTAKDAERAINTLNGLRLQ R D K A K D 2 0 1 1 0 0 0 3 1 0 1 2 0 1 0 1 1 0 2 3 0 0 19 1 2025.032 Q15717;M0QZR9 Q15717 54 72 ELAVL1 ELAV-like protein 1 yes no 2;3;4 3.5848E-08 72.421 By MS/MS By matching By MS/MS By matching 1 2 4 1 1.0664 1.0927 7.5694 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0157 1.0585 NaN 1 0 Median 1.2867 1.1378 1.388 2 0 Median 1.0268 1.0927 6.1279 4 1 Median 1.0971 0.93227 NaN 1 0 Median 162390000 78871000 83520000 0 0 0 0 0 0 22477000 10899000 11578000 963920 428800 535120 135120000 65713000 69410000 3826400 1830500 1995900 4584 2964 4768 23472;23473;23474;23475;23476;23477;23478;23479 23887;23888;23889;23890;23891;23892;23893;23894;23895;23896;23897 23888 11 DKVDVASVIVTK ASIGQACEAQAKAFKDKVDVASVIVTKLDG AFKDKVDVASVIVTKLDGHAKGGGALSAVA K D K T K L 1 0 0 2 0 0 0 0 0 1 0 2 0 0 0 1 1 0 0 4 0 0 12 1 1272.7289 G3V4F7;P61011 G3V4F7 174 185 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.00053221 90.653 By matching By matching By matching By MS/MS 1 1 1 1 1.1115 1.0841 8.213 4 Median 1.1443 1.1019 NaN 1 0 Median 1.0795 1.0162 NaN 1 0 Median 1.1689 1.2328 NaN 1 0 Median 1.067 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12003000 5242300 6761100 3144300 1151000 1993300 1846800 922480 924300 2059300 933060 1126200 4953000 2235700 2717300 0 0 0 0 0 0 4585 1116 4769 23480;23481;23482;23483 23898;23899 23899 2 DKVMPLIIQGFK LMLLGVSNKMTDRERDKVMPLIIQGFKDAA RERDKVMPLIIQGFKDAAEEAGTSVTGGQT R D K F K D 0 0 0 1 0 1 0 1 0 2 1 2 1 1 1 0 0 0 0 1 0 0 12 1 1387.7897 P49903;Q5T5U6;Q5T5U7 P49903 138 149 SEPHS1 Selenide, water dikinase 1 yes no 2 0.0029455 66.27 By MS/MS 1 2.4309 2.649 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4309 2.649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2288300 742000 1546300 0 0 0 0 0 0 2288300 742000 1546300 0 0 0 0 0 0 0 0 0 4586 2404 4770 23484 23900 23900 1 DKVQAGDVITIDK TIYDLGTKMIESLTKDKVQAGDVITIDKAT TKDKVQAGDVITIDKATGKISKLGRSFTRA K D K D K A 1 0 0 3 0 1 0 1 0 2 0 2 0 0 0 0 1 0 0 2 0 0 13 1 1400.7511 Q9Y230;M0R0Y3 Q9Y230 185 197 RUVBL2 RuvB-like 2 yes no 2;3 1.4306E-09 176.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 2 3 1.1421 1.0963 5.9281 15 Median 1.0937 1.0443 6.8752 2 0 Median 1.1686 1.0958 6.4278 2 0 Median 1.0486 1.0897 6.6069 2 0 Median 1.1952 1.1646 5.9592 4 0 Median 1.0339 1.103 5.535 2 1 Median 1.1954 1.0375 4.7469 3 0 Median 190710000 89534000 101170000 34081000 16065000 18016000 16438000 7245000 9193000 63556000 31354000 32202000 60911000 27750000 33161000 10647000 5039200 5607600 5075700 2080500 2995200 4587 4368 4771 23485;23486;23487;23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499 23901;23902;23903;23904;23905;23906;23907;23908;23909;23910;23911;23912;23913;23914;23915;23916;23917;23918;23919;23920;23921;23922;23923;23924;23925 23920 25 DKVQLMAAEK KLLLDMYRSAPKEQRDKVQLMAAEKKSKAE PKEQRDKVQLMAAEKKSKAELEDLRQRLKD R D K E K K 2 0 0 1 0 1 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 10 1 1131.5958 Q5VTR2 Q5VTR2 659 668 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.010251 74.464 By MS/MS 1 1.2683 1.2082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2683 1.2082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1093600 377800 715790 0 0 0 0 0 0 0 0 0 1093600 377800 715790 0 0 0 0 0 0 4588 3112 4772 23500 23926 23926 1 DKVQLMAAER KLLLDMYKSAPKEQRDKVQLMAAERKAKAE PKEQRDKVQLMAAERKAKAEVDELRSRIRE R D K E R K 2 1 0 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 1 1159.6019 O75150;H3BP71 O75150 685 694 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.0019805 75.378 By MS/MS 1 0.96176 1.09 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96176 1.09 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3918400 2056200 1862200 0 0 0 0 0 0 3918400 2056200 1862200 0 0 0 0 0 0 0 0 0 4589 1648 4773 23501 23927 23927 1 DKVVVFLK GGGGSAEQLDALVKKDKVVVFLKGTPEQPQ LDALVKKDKVVVFLKGTPEQPQCGFSNAVV K D K L K G 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 3 0 0 8 1 946.58515 Q86SX6 Q86SX6 52 59 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 2 0.020419 82.279 By MS/MS By MS/MS 1 1 1.3565 1.2222 21.33 2 Median 1.1224 1.0511 NaN 1 0 Median 1.6394 1.4212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27138000 12030000 15108000 12820000 6195100 6625000 14318000 5835200 8482800 0 0 0 0 0 0 0 0 0 0 0 0 4590 3264 4774 23502;23503 23928;23929 23929 2 DKWLAPDGLIFPDR CLFYESMLNTVLYARDKWLAPDGLIFPDRA RDKWLAPDGLIFPDRATLYVTAIEDRQYKD R D K D R A 1 1 0 3 0 0 0 1 0 1 2 1 0 1 2 0 0 1 0 0 0 0 14 1 1641.8515 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4 E9PKG1 136 149 PRMT1 Protein arginine N-methyltransferase 1 yes no 2;3 0.0060555 49.5 By matching By matching By MS/MS 2 2 3 0.73431 0.77755 24.075 7 Median 0.74113 0.77659 1.6163 2 0 Median 0.63844 0.59807 46.991 2 0 Median 0.70309 0.77755 13.036 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20049000 10999000 9049700 4721100 2388800 2332300 5230800 3033800 2197000 10097000 5576300 4520400 0 0 0 0 0 0 0 0 0 4591 947 4775 23504;23505;23506;23507;23508;23509;23510 23930;23931;23932 23931 3 DKWSNFDPTGLER EGGGDRGLGDRPAPKDKWSNFDPTGLERAA PKDKWSNFDPTGLERAAKAARELEHSRYAK K D K E R A 0 1 1 2 0 0 1 1 0 0 1 1 0 1 1 1 1 1 0 0 0 0 13 1 1563.7318 Q5T9A4;Q9NVI7 Q9NVI7 45 57 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2;3 0.00037169 84.658 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1.1492 1.0608 11.957 7 Median 0.95818 0.96215 1.5195 2 0 Median 1.1307 1.0423 2.4935 2 0 Median 1.1934 1.268 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.168 1.2111 NaN 1 0 Median 1.3371 1.2374 NaN 1 0 Median 19170000 8841600 10328000 12985000 6000100 6984900 2398900 1112400 1286500 2337600 1156100 1181500 0 0 0 1294100 504260 789870 153960 68744 85219 4592 4133;3098 4776 23511;23512;23513;23514;23515;23516;23517 23933;23934;23935 23933 3 DKWSPALQIR PNVDKLGRICLDILKDKWSPALQIRTVLLS LDILKDKWSPALQIRTVLLSIQALLSAPNP K D K I R T 1 1 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 10 1 1212.6615 P61088;F8VQQ8;Q5JXB2 P61088 93 102 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 2;3 9.4488E-05 147.19 By MS/MS By MS/MS By MS/MS 4 5 3 0.98937 0.95516 116.17 12 Median 0.93233 0.91504 148.03 4 0 Median 1.0743 0.94811 101.9 5 1 Median 1.0788 1.115 138.86 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158660000 88084000 70575000 82225000 47412000 34812000 30951000 17403000 13548000 45483000 23268000 22215000 0 0 0 0 0 0 0 0 0 4593 2544 4777 23518;23519;23520;23521;23522;23523;23524;23525;23526;23527;23528;23529 23936;23937;23938;23939;23940;23941;23942;23943;23944;23945;23946;23947;23948;23949;23950 23937 15 DKYEPAAVSEQGDKK ______________________________ DKYEPAAVSEQGDKKGKKGKKDRDMDELKK R D K K K G 2 0 0 2 0 1 2 1 0 0 0 3 0 0 1 1 0 0 1 1 0 0 15 2 1663.8053 P05023 P05023 8 22 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 3 8.0358E-07 92.38 By matching By MS/MS 4 4 0.88399 0.93705 16.456 8 Median 0.81973 0.83929 19.715 4 0 Median 0.93205 0.98729 13.193 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7843300 3745300 4098100 1251500 623690 627800 6591900 3121600 3470300 0 0 0 0 0 0 0 0 0 0 0 0 4594 1857 4778 23530;23531;23532;23533;23534;23535;23536;23537 23951;23952;23953;23954;23955 23954 5 DKYGVFPLR SAKTLAVSGLGVVGRDKYGVFPLRGKILNV LGVVGRDKYGVFPLRGKILNVREASHKQIM R D K L R G 0 1 0 1 0 0 0 1 0 0 1 1 0 1 1 0 0 0 1 1 0 0 9 1 1093.592 P11388 P11388 479 487 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0031263 106.36 By MS/MS By MS/MS By MS/MS 1 1 1 1.0667 1.1461 15.295 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0696 1.2824 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0098 1.1461 NaN 1 0 Median 1.0667 0.94759 NaN 1 0 Median 19708000 9403100 10305000 0 0 0 0 0 0 7611900 3802400 3809400 0 0 0 10508000 4860300 5647900 1588100 740430 847650 4595 1963 4779 23538;23539;23540 23956;23957;23958;23959;23960;23961 23958 6 DKYKDTQSVSAIGEEK EIKGRTVAVDWAVAKDKYKDTQSVSAIGEE KYKDTQSVSAIGEEKSHESKHQESVKKKGR K D K E K S 1 0 0 2 0 1 2 1 0 1 0 3 0 0 0 2 1 0 1 1 0 0 16 2 1796.8792 Q9NW13;C9JAA9 Q9NW13 193 208 RBM28 RNA-binding protein 28 yes no 3 0.002991 27.85 By MS/MS By MS/MS 1 1 0.85279 0.93858 45.271 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1595 1.2927 NaN 1 0 Median 0.6272 0.68147 NaN 1 0 Median 4791300 2370700 2420600 0 0 0 0 0 0 0 0 0 0 0 0 4266900 2108100 2158800 524350 262570 261780 4596 4145 4780 23541;23542 23962;23963;23964 23962 3 DKYPNLQVIGGNVVTAAQAK QGNSIFQINMIKYIKDKYPNLQVIGGNVVT LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K D K A K N 3 0 2 1 0 2 0 2 0 1 1 2 0 0 1 0 1 0 1 3 0 0 20 1 2085.1219 P12268;H0Y4R1 P12268 292 311 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.838E-11 79.293 By MS/MS By matching By MS/MS By matching 4 1 1 1 0.95855 0.95439 15.747 7 Median 0.95628 0.90674 11.624 4 1 Median 0.91763 0.7955 NaN 1 0 Median 0.95855 1.0046 NaN 1 0 Median 1.2248 1.2243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32780000 16359000 16421000 28127000 13939000 14188000 290610 177290 113310 3976200 2071200 1905000 386510 171850 214660 0 0 0 0 0 0 4597 1148 4781 23543;23544;23545;23546;23547;23548;23549 23965;23966;23967;23968;23969 23966 5 DLAAFDKSHDQAVR ATEQGRMKFTRPLFKDLAAFDKSHDQAVRT KDLAAFDKSHDQAVRTYQEHKASMHPVTAM K D L V R T 3 1 0 3 0 1 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 14 1 1571.7692 P09960 P09960 574 587 LTA4H Leukotriene A-4 hydrolase yes yes 3 2.0011E-09 109.44 By MS/MS By matching By matching 1 1 1 1.0149 1.0427 9.68 3 Median 0.99835 1.0014 NaN 1 0 Median 1.3884 1.2039 NaN 1 0 Median 1.0149 1.0427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21394000 10732000 10662000 11698000 6127300 5570200 2700700 1089000 1611700 6996100 3515900 3480200 0 0 0 0 0 0 0 0 0 4598 1924 4782 23550;23551;23552 23970 23970 1 DLAALEDK ASVQALLRKHEGLERDLAALEDKVKALCAE KHEGLERDLAALEDKVKALCAEADRLQQSH R D L D K V 2 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 873.44436 A0A0D9SF54;Q13813 Q13813 303 310 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.013601 52.716 By matching By MS/MS 1 2 1.285 1.1223 13.488 3 Plateau NaN NaN NaN 0 0 Median 1.285 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0715 0.99024 16.105 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4313000 2111900 2201100 0 0 0 2580500 1341600 1238900 0 0 0 1732500 770310 962240 0 0 0 0 0 0 4599 264;2838 4783 23553;23554;23555 23971 23971 1 DLAALEDKVK ASVQALLRKHEGLERDLAALEDKVKALCAE EGLERDLAALEDKVKALCAEADRLQQSHPL R D L V K A 2 0 0 2 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1100.6077 A0A0D9SF54;Q13813 Q13813 303 312 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0015985 85.731 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 0.9641 0.95417 6.9732 7 Median NaN NaN NaN 0 0 Median 1.1055 1.0592 NaN 1 0 Median 0.87551 1.0202 NaN 1 0 Median 0.97727 0.956 4.52 2 0 Median 0.87962 0.95417 NaN 1 0 Median 0.99096 0.89037 4.8528 2 0 Median 153720000 76420000 77304000 0 0 0 40873000 18909000 21964000 78700000 40893000 37807000 8462900 4083400 4379500 19882000 9762900 10119000 5805200 2771400 3033800 4600 264;2838 4784 23556;23557;23558;23559;23560;23561;23562 23972;23973;23974;23975;23976;23977;23978;23979;23980;23981;23982 23979 11 DLAALGDKVNSLGETAER ASVQALQRKHEGFERDLAALGDKVNSLGET ALGDKVNSLGETAERLIQSHPESAEDLQEK R D L E R L 3 1 1 2 0 0 2 2 0 0 3 1 0 0 0 1 1 0 0 1 0 0 18 1 1857.9432 A0A0D9SF54;Q13813 Q13813 1281 1298 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.2274E-14 157.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 4 1 3 2 1.0463 1.0732 29.911 17 Median 1.3375 1.3682 19.757 4 0 Median 1.2222 1.1298 16.347 3 0 Median 0.7281 0.84806 40.2 4 0 Median 1.0481 1.0118 NaN 1 0 Median 0.82516 0.93552 20.179 3 2 Median 1.0156 0.89749 3.8943 2 0 Median 252180000 122080000 130110000 81303000 34162000 47141000 18882000 7984700 10897000 119820000 63150000 56668000 741180 356540 384640 30828000 16139000 14689000 609750 284830 324920 4601 264;2838 4785 23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573;23574;23575;23576;23577;23578;23579 23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998;23999;24000;24001;24002;24003;24004 24000 22 DLADELALVDVIEDK VGAVGMACAISILMKDLADELALVDVIEDK DLADELALVDVIEDKLKGEMMDLQHGSLFL K D L D K L 2 0 0 4 0 0 2 0 0 1 3 1 0 0 0 0 0 0 0 2 0 0 15 0 1656.8458 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8;F5GZQ4 P00338 43 57 LDHA L-lactate dehydrogenase A chain yes no 2 8.6165E-10 107.18 By matching By MS/MS By MS/MS 1 3 2 1.0366 0.94525 18.099 6 Median 0.98502 0.9665 NaN 1 0 Median 0.86142 0.74264 12.712 3 0 Median 1.1391 1.1032 5.1395 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17782000 7965500 9816100 1817200 785050 1032200 4563900 2208800 2355100 11400000 4971700 6428800 0 0 0 0 0 0 0 0 0 4602 1813 4786 23580;23581;23582;23583;23584;23585 24005;24006;24007;24008;24009 24007 5 DLADVAAR VTARPTAVNMARAARDLADVAAREAEREGA NMARAARDLADVAAREAEREGATEEAVRER R D L A R E 3 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 829.42938 Q9BV20 Q9BV20 102 109 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.010415 58.917 By MS/MS 1 0.89937 0.76692 NaN 1 Median NaN NaN NaN 0 0 Median 0.89937 0.76692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1522500 851570 670950 0 0 0 1522500 851570 670950 0 0 0 0 0 0 0 0 0 0 0 0 4603 3844 4787 23586 24010 24010 1 DLADWLNIK PVRIVGLSTALANARDLADWLNIKQMGLFN ALANARDLADWLNIKQMGLFNFRPSVRPVP R D L I K Q 1 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 9 0 1086.571 Q8N3C0 Q8N3C0 1498 1506 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0702 26.602 By MS/MS By matching 1 2 1.2315 1.0816 4.7188 3 Median 1.0787 1.0698 NaN 1 0 Median 1.286 1.1233 5.35 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3551300 1631400 1919900 1331100 630640 700450 2220200 1000700 1219400 0 0 0 0 0 0 0 0 0 0 0 0 4604 3366 4788 23587;23588;23589 24011 24011 1 DLAEDAPWK GGVDTRDAEMPATEKDLAEDAPWKKIQQNT MPATEKDLAEDAPWKKIQQNTFTRWCNEHL K D L W K K 2 0 0 2 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 9 0 1043.4924 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 34 42 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.0044715 60.59 By matching By MS/MS 1 3 0.97859 0.85508 17.63 4 Median 1.107 1.0436 NaN 1 0 Median 0.93817 0.83272 13.474 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16041000 8428000 7613000 1882400 1107300 775120 14159000 7320700 6837900 0 0 0 0 0 0 0 0 0 0 0 0 4605 2088;3120;1664;2871 4789 23590;23591;23592;23593 24012;24013 24012 2 DLAEDAPWKK GGVDTRDAEMPATEKDLAEDAPWKKIQQNT PATEKDLAEDAPWKKIQQNTFTRWCNEHLK K D L K K I 2 0 0 2 0 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 10 1 1171.5873 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 34 43 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.00054472 100.02 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.74902 0.72341 13.911 7 Median 0.82018 0.83943 8.9861 2 0 Median 0.79183 0.76152 7.3768 2 0 Median 0.58391 0.67413 NaN 1 1 Median 0.66448 0.64709 15.767 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88939000 47254000 41685000 29896000 15634000 14261000 50757000 26998000 23759000 5300400 2962000 2338300 2985300 1659300 1326000 0 0 0 0 0 0 4606 2088;3120;1664;2871 4790 23594;23595;23596;23597;23598;23599;23600 24014;24015;24016;24017;24018;24019;24020;24021 24020 8 DLAEDLYDGQVLQK DWINDVLVGERIIVKDLAEDLYDGQVLQKL KDLAEDLYDGQVLQKLFEKLESEKLNVAEV K D L Q K L 1 0 0 3 0 2 1 1 0 0 3 1 0 0 0 0 0 0 1 1 0 0 14 0 1605.7886 Q9NVD7;E9PS97 Q9NVD7 118 131 PARVA Alpha-parvin yes no 2 1.4078E-08 150.94 By MS/MS By MS/MS By MS/MS 2 2 3 0.9622 0.88941 14.94 7 Median NaN NaN NaN 0 0 Median 0.84159 0.7356 16.73 2 1 Median 1.0099 1.0076 3.1816 2 0 Median 1.0666 0.88941 4.4481 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51000000 24583000 26417000 0 0 0 3775400 1725800 2049600 31610000 14882000 16727000 15615000 7975200 7640100 0 0 0 0 0 0 4607 4127 4791 23601;23602;23603;23604;23605;23606;23607 24022;24023;24024;24025;24026;24027;24028;24029;24030 24029 9 DLAEIGIAVGNNDVK HQKKRAAEMMASLLKDLAEIGIAVGNNDVK DLAEIGIAVGNNDVKQPEGTGMIDEEFTVA K D L V K Q 2 0 2 2 0 0 1 2 0 2 1 1 0 0 0 0 0 0 0 2 0 0 15 0 1526.794 P33176 P33176 561 575 KIF5B Kinesin-1 heavy chain yes yes 2 0.007955 39.917 By MS/MS By MS/MS By matching 1 1 1 1.3007 1.0973 18.446 3 Median 1.404 1.4106 NaN 1 1 Median 1.1187 0.98452 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3007 1.0973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3985800 1700500 2285200 1645700 698890 946850 1734700 735950 998780 0 0 0 605320 265710 339610 0 0 0 0 0 0 4608 2221 4792 23608;23609;23610 24031;24032 24032 2 DLAEITTLDR DYIRQQKSDPIQEIRDLAEITTLDRSKRNI IQEIRDLAEITTLDRSKRNIIGYFEQKDSD R D L D R S 1 1 0 2 0 0 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1145.5928 Q9BS26 Q9BS26 149 158 ERP44 Endoplasmic reticulum resident protein 44 yes yes 2 0.0014621 65.305 By MS/MS By matching 1 2 1.0011 0.9982 68.202 3 Median 1.0011 0.9982 NaN 1 0 Median 0.65101 0.55463 83.671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4985300 2156300 2829000 3201000 1307100 1894000 1784300 849240 935070 0 0 0 0 0 0 0 0 0 0 0 0 4609 3809 4793 23611;23612;23613 24033;24034 24033 2 DLAFTLEER HQRGYLLTRNPHLNKDLAFTLEERQQLNIH NPHLNKDLAFTLEERQQLNIHGLLPPSFNS K D L E R Q 1 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1092.5451 P48163 P48163 27 35 ME1 NADP-dependent malic enzyme yes yes 2 0.0028118 69.423 By MS/MS By matching By matching 1 1 1 1.4536 1.3685 38.122 3 Plateau 1.4536 1.4121 NaN 1 0 Median 1.3695 1.1884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83073 0.6809 NaN 1 0 Median 8417100 2866900 5550300 5173400 1828300 3345100 3071400 945560 2125800 0 0 0 0 0 0 0 0 0 172400 93024 79371 4610 2359 4794 23614;23615;23616 24035;24036 24036 2 DLAGSIIGK DLGGPIITTQVTIPKDLAGSIIGKGGQRIK QVTIPKDLAGSIIGKGGQRIKQIRHESGAS K D L G K G 1 0 0 1 0 0 0 2 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 872.49673 P61978;S4R359 P61978 397 405 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 1;2 0.0034179 65.246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 11 11 10 14 1.1678 1.0615 24.432 57 Median 1.2499 1.1654 7.5654 5 0 Median 1.3163 1.1204 16.96 7 0 Median 1.0853 1.0523 15.041 11 0 Median 1.2963 1.1021 36.653 11 0 Median 1.0173 1.0401 17.304 9 0 Median 1.2387 1.0245 26.312 14 0 Median 979550000 451790000 527760000 38264000 16544000 21720000 33312000 14490000 18822000 489750000 230540000 259210000 95677000 41056000 54622000 244950000 113840000 131120000 77595000 35324000 42270000 4611 2565 4795 23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637;23638;23639;23640;23641;23642;23643;23644;23645;23646;23647;23648;23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659;23660;23661;23662;23663;23664;23665;23666;23667;23668;23669;23670;23671;23672;23673;23674 24037;24038;24039;24040;24041;24042;24043;24044;24045;24046;24047;24048;24049;24050;24051;24052;24053;24054;24055;24056;24057;24058;24059;24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070;24071;24072;24073;24074;24075 24061 38 DLALADEASR LRDTILDWEDSLPDRDLALADEASRNADLS SLPDRDLALADEASRNADLSITLGTSLQIR R D L S R N 3 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1059.5197 Q8N6T7;M0QZ09;M0R1N9;M0R1F6;M0QXA0 Q8N6T7 196 205 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 2 0.0095388 45.081 By MS/MS 2 1.1749 0.97774 7.7992 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1749 0.97774 7.7992 2 0 Median 5143100 2217800 2925300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5143100 2217800 2925300 4612 3390 4796 23675;23676 24076;24077 24076 2 DLALVNDQLLGFVR IRHDVIVTIITAAKRDLALVNDQLLGFVRE RDLALVNDQLLGFVRERTLDKRWRVRKEAM R D L V R E 1 1 1 2 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1571.8671 Q29RF7 Q29RF7 391 404 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 3.5493E-06 95.573 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 1 1 1.2826 1.1301 18.317 9 Median 1.3334 1.3363 14.495 2 0 Median 1.2826 1.1301 NaN 1 0 Median 0.99322 1.0919 22.702 3 0 Median 1.3164 1.1221 NaN 1 0 Median 1.585 1.6905 NaN 1 0 Median 1.2243 1.0826 NaN 1 0 Median 25367000 12172000 13194000 2023500 855470 1168000 468300 212010 256290 20480000 10103000 10377000 1215000 527030 687990 1093100 431320 661820 86852 43411 43441 4613 3003 4797 23677;23678;23679;23680;23681;23682;23683;23684;23685 24078;24079;24080;24081;24082;24083;24084;24085;24086 24080 9 DLANLEVPHELPTK EAMERLKMLALLKRKDLANLEVPHELPTKQ KDLANLEVPHELPTKQDGSGVKGYEEKLNG K D L T K Q 1 0 1 1 0 0 2 0 1 0 3 1 0 0 2 0 1 0 0 1 0 0 14 0 1574.8304 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 53 66 GATAD2B Transcriptional repressor p66-beta yes no 3 0.0031113 33.204 By MS/MS 1 0.6667 0.70094 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6667 0.70094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5338300 2889000 2449400 0 0 0 0 0 0 5338300 2889000 2449400 0 0 0 0 0 0 0 0 0 4614 311 4798 23686 24087 24087 1 DLAPIGIR ASKGGIVGMTLPIARDLAPIGIRVMTIAPG MTLPIARDLAPIGIRVMTIAPGLFGTPLLT R D L I R V 1 1 0 1 0 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 853.50215 Q99714 Q99714 185 192 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 0.0023524 114.59 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1173 0.98483 13.705 6 Median 0.89374 0.84499 13.579 2 0 Median 1.2129 1.0031 7.5615 2 0 Median 1.0619 1.02 NaN 1 0 Median 1.3829 1.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92020000 46727000 45293000 66047000 35074000 30973000 7488800 3374900 4113900 17285000 7833400 9451800 1198400 444680 753720 0 0 0 0 0 0 4615 3764 4799 23687;23688;23689;23690;23691;23692 24088;24089;24090;24091;24092;24093;24094;24095 24091 8 DLAPYLPSVTPGLK AAQIIGNMYSLTDQKDLAPYLPSVTPGLKA KDLAPYLPSVTPGLKASLLDPVPEVRTVSA K D L L K A 1 0 0 1 0 0 0 1 0 0 3 1 0 0 3 1 1 0 1 1 0 0 14 0 1469.813 Q92616 Q92616 1650 1663 GCN1L1 Translational activator GCN1 yes yes 2 0.052059 35.414 By MS/MS 1 0.042945 0.038356 NaN 1 Median NaN NaN NaN 0 0 Median 0.042945 0.038356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35495000 34434000 1060500 0 0 0 35495000 34434000 1060500 0 0 0 0 0 0 0 0 0 0 0 0 4616 3544 4800 23693 24096 24096 1 DLAQALINR RPVTLRTNTLKTRRRDLAQALINRGVNLDP LKTRRRDLAQALINRGVNLDPLGKWSKTGL R D L N R G 2 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1012.5665 P46087;F5GYR3 P46087 323 331 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 8.8847E-05 148.07 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 5 3 1.0606 1.0009 9.9007 12 Median NaN NaN NaN 0 0 Median 1.0838 0.92681 NaN 1 0 Median 1.0107 1.0737 NaN 1 0 Median 1.2374 1.0495 25.139 2 0 Median 1.014 1.0157 7.2789 5 0 Median 1.1774 0.95881 6.475 3 0 Median 91003000 44364000 46640000 4476700 4080700 396010 2503400 1285600 1217900 9367300 4164000 5203200 843470 359380 484080 70997000 33214000 37783000 2815400 1259700 1555800 4617 2338 4801 23694;23695;23696;23697;23698;23699;23700;23701;23702;23703;23704;23705;23706 24097;24098;24099;24100;24101;24102;24103;24104 24101 8 DLAQDEAVWLER KLCQALAINKSFDQRDLAQDEAVWLERGPL DQRDLAQDEAVWLERGPLEPSEPAVVAAAR R D L E R G 2 1 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 12 0 1443.6994 P29372;A2IDA3 P29372 235 246 MPG DNA-3-methyladenine glycosylase yes no 2 0.00020783 132.78 By MS/MS By MS/MS By matching 1 1 1 1.0359 0.91322 1.8731 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92367 0.89946 NaN 1 0 Median 1.1166 0.9336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0359 0.91322 NaN 1 0 Median 15034000 7208900 7825300 0 0 0 0 0 0 13524000 6539900 6983800 1376900 613950 762930 0 0 0 133630 55049 78579 4618 2170 4802 23707;23708;23709 24105;24106;24107;24108;24109 24108 5 DLASPLIGR LKISMIPQLNSKAVKDLASPLIGRS_____ NSKAVKDLASPLIGRS______________ K D L G R S 1 1 0 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 0 940.53418 O95067;H0YMP3 O95067 389 397 CCNB2 G2/mitotic-specific cyclin-B2 yes no 2 0.02621 51.854 By MS/MS 1 0.85256 0.74119 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85256 0.74119 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3555200 2123800 1431400 0 0 0 0 0 0 0 0 0 3555200 2123800 1431400 0 0 0 0 0 0 4619 1743 4803 23710 24110 24110 1 DLASVNNLLK LSEVEALLASEDYGKDLASVNNLLKKHQLL EDYGKDLASVNNLLKKHQLLEADISAHEDR K D L L K K 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1085.6081 A0A0D9SF54;Q13813 Q13813 1689 1698 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00083236 70.919 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 4 1 2 2 1 1.038 0.95239 18.102 11 Median 0.66757 0.62548 NaN 1 0 Median 1.1424 0.99915 8.7207 4 0 Median 0.98407 1.0901 NaN 1 0 Median 1.0583 0.98714 7.0279 2 0 Median 0.93852 0.99692 22.942 2 0 Median 0.91985 0.79178 NaN 1 0 Median 36246000 17978000 18268000 3479700 2784000 695680 16773000 7136700 9636300 8503400 4332300 4171100 3577400 1689100 1888300 3344700 1750200 1594500 567990 285670 282320 4620 264;2838 4804 23711;23712;23713;23714;23715;23716;23717;23718;23719;23720;23721 24111;24112;24113;24114;24115 24114 5 DLASVQALLR IKEKEQLMASDDFGRDLASVQALLRKHEGL DDFGRDLASVQALLRKHEGLERDLAALEDK R D L L R K 2 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1084.6241 A0A0D9SF54;Q13813 Q13813 286 295 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00035707 117.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 5 4 3 3 1.2232 1.0933 21.629 20 Median 1.2294 1.2249 1.9986 2 0 Median 1.3019 1.0959 6.1553 4 0 Median 0.96779 1.0283 27.356 4 0 Median 1.1846 1.0366 23.472 4 0 Median 1.4004 1.4353 8.6591 3 0 Median 1.1501 0.98974 11.338 3 0 Median 153690000 67563000 86126000 7358800 3246100 4112600 79714000 33288000 46426000 37036000 18486000 18550000 7516500 3428900 4087700 16687000 6715700 9971300 5376400 2398100 2978300 4621 264;2838 4805 23722;23723;23724;23725;23726;23727;23728;23729;23730;23731;23732;23733;23734;23735;23736;23737;23738;23739;23740;23741;23742 24116;24117;24118;24119;24120;24121;24122;24123;24124;24125;24126;24127;24128 24116 13 DLASYLNYK KSQSVFSGNPSIWLKDLASYLNYKLQAPLS PSIWLKDLASYLNYKLQAPLSEPTLSQHTH K D L Y K L 1 0 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 0 0 0 9 0 1085.5393 Q6NUQ4;H7C0H8 Q6NUQ4 144 152 TMEM214 Transmembrane protein 214 yes no 2 0.00098836 86.794 By MS/MS 1 1.0834 1.1093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0834 1.1093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8901300 4620500 4280800 0 0 0 0 0 0 8901300 4620500 4280800 0 0 0 0 0 0 0 0 0 4622 3145 4806 23743 24129;24130 24129 2 DLAVPAALTPR TAVMIIAYHTVCTPRDLAVPAALTPRASPG CTPRDLAVPAALTPRASPGHSPHYFAASSP R D L P R A 3 1 0 1 0 0 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 11 0 1122.6397 Q8TEM1 Q8TEM1 1836 1846 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00047715 68.893 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.71765 0.73766 17.994 6 Median 0.79117 0.79591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63385 0.67815 1.1457 2 0 Median 1.1104 0.96957 6.8828 2 0 Median 0.64544 0.67048 NaN 1 0 Median NaN NaN NaN 0 0 Median 40550000 23802000 16748000 4070700 1882700 2188100 0 0 0 34374000 20865000 13509000 1104200 519940 584270 1001400 534460 466990 0 0 0 4623 3477 4807 23744;23745;23746;23747;23748;23749 24131;24132;24133;24134 24131 4 DLAVYNQLLNIFPK IYLALRKMREYGVERDLAVYNQLLNIFPKE RDLAVYNQLLNIFPKEVFRPRNIIQRIFVH R D L P K E 1 0 2 1 0 1 0 0 0 1 3 1 0 1 1 0 0 0 1 1 0 0 14 0 1646.9032 K7EPL5;Q9BQ95;K7EIK2;K7EJI1;J3KTF5;K7EN32 K7EPL5 125 138 ECSIT Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial yes no 2 0.0026176 42.001 By matching By MS/MS 1 1 1.1971 1.0967 16.08 2 Median 1.2599 1.2288 NaN 1 0 Median 1.1374 0.97884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2067300 997430 1069900 327900 142840 185060 1739400 854590 884850 0 0 0 0 0 0 0 0 0 0 0 0 4624 1393 4808 23750;23751 24135 24135 1 DLDAFENETAK MSALQKKYYKAILMKDLDAFENETAKKVKL ILMKDLDAFENETAKKVKLQNILSQLRKCV K D L A K K 2 0 1 2 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 11 0 1251.5619 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C0F0 Q86WJ1 297 307 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00021279 98.249 By MS/MS 1 0.87945 0.95948 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87945 0.95948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11162000 5730200 5431500 0 0 0 0 0 0 11162000 5730200 5431500 0 0 0 0 0 0 0 0 0 4625 3293 4809 23752 24136;24137 24136 2 DLDDFQSWLSR EASLGEASKLQQFLRDLDDFQSWLSRTQTA QFLRDLDDFQSWLSRTQTAIASEDMPNTLT R D L S R T 0 1 0 3 0 1 0 0 0 0 2 0 0 1 0 2 0 1 0 0 0 0 11 0 1380.631 Q01082;A0A087WUZ3 Q01082 1070 1080 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00018924 76.465 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.224 1.1613 9.9917 4 Median 1.3044 1.31 NaN 1 0 Median 1.3218 1.1345 NaN 1 0 Median 0.92806 1.0302 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1486 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median 4915000 2262500 2652500 1580800 645440 935340 758040 318250 439790 1679100 839610 839540 0 0 0 897070 459220 437840 0 0 0 4626 2681 4810 23753;23754;23755;23756 24138;24139 24139 2 DLDDIEDENEQLKQENK EMIGKLKEEIDLLNRDLDDIEDENEQLKQE DDIEDENEQLKQENKTLLKVVGQLTR____ R D L N K T 0 0 2 4 0 2 4 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 17 1 2073.9338 Q96IZ0;H0YHP5 Q96IZ0 313 329 PAWR PRKC apoptosis WT1 regulator protein yes no 3 5.7417E-06 77.562 By MS/MS By matching 2 2 0.80546 0.77821 21.665 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8708 0.93072 4.0191 2 0 Median 0.69981 0.64359 5.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18289000 9366000 8923000 0 0 0 0 0 0 14957000 7622700 7334500 3331900 1743300 1588600 0 0 0 0 0 0 4627 3681 4811 23757;23758;23759;23760 24140;24141;24142;24143 24143 4 DLDELSR DQASNILASFGLSARDLDELSRYPEDKITP ASFGLSARDLDELSRYPEDKITPENLPQIL R D L S R Y 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 846.40831 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 121 127 MATR3 Matrin-3 yes no 2 0.0030939 105.2 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0223 1.0132 10.935 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0407 1.106 NaN 1 0 Median 1.0043 0.85295 NaN 1 0 Median 0.98486 0.9999 NaN 1 0 Median 1.2663 1.0266 NaN 1 0 Median 29625000 15306000 14319000 0 0 0 0 0 0 8603100 4241400 4361700 4870400 2390600 2479900 13850000 7628400 6221400 2302000 1045800 1256200 4628 297 4812 23761;23762;23763;23764 24144;24145;24146;24147 24144 4 DLDELSRYPEDK DQASNILASFGLSARDLDELSRYPEDKITP SARDLDELSRYPEDKITPENLPQILLQLKR R D L D K I 0 1 0 3 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 1 1478.6889 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 121 132 MATR3 Matrin-3 yes no 2;3 1.2289E-29 209.97 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 4 3 3 0.96274 0.99049 37.384 15 Median 1.132 1.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95118 1.0544 17.503 4 0 Median 1.5531 1.4146 38.195 4 0 Median 0.88741 0.9765 43.266 3 0 Median 0.89486 0.81645 16.666 3 0 Median 119600000 58700000 60895000 8982800 4247800 4735000 0 0 0 53057000 27451000 25607000 13028000 4292700 8735100 42751000 21956000 20794000 1776800 752800 1024000 4629 297 4813 23765;23766;23767;23768;23769;23770;23771;23772;23773;23774;23775;23776;23777;23778;23779 24148;24149;24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161 24149 14 DLDELSRYPEDKITPENLPQILLQLK DQASNILASFGLSARDLDELSRYPEDKITP KITPENLPQILLQLKRRRTEEGPTLSYGRD R D L L K R 0 1 1 3 0 2 3 0 0 2 6 2 0 0 3 1 1 0 1 0 0 0 26 2 3079.6441 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 121 146 MATR3 Matrin-3 yes no 3 0.030586 13.092 By MS/MS 1 0.53901 0.63518 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53901 0.63518 NaN 1 0 Median NaN NaN NaN 0 0 Median 3482000 2096300 1385700 0 0 0 0 0 0 0 0 0 0 0 0 3482000 2096300 1385700 0 0 0 4630 297 4814 23780 24162 24162 1 DLDESSGVR DDFAAHLTLEHRAPRDLDESSGVRHVRRMF EHRAPRDLDESSGVRHVRRMFHPGRGLGGP R D L V R H 0 1 0 2 0 0 1 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 976.44615 C9J3I2;Q9P0J7 C9J3I2 90 98 KCMF1 E3 ubiquitin-protein ligase KCMF1 yes no 2 0.019275 40.002 By MS/MS 1 1.1957 1.1793 NaN 1 Median 1.1957 1.1793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1115100 600160 514930 1115100 600160 514930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4631 674 4815 23781 24163 24163 1 DLDIIDNYDYSHTVK LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK DLDIIDNYDYSHTVKYTPTQQGNMQVLVTY K D L V K Y 0 0 1 4 0 0 0 0 1 2 1 1 0 0 0 1 1 0 2 1 0 0 15 0 1809.8421 O75369;E7EN95 O75369 895 909 FLNB Filamin-B yes no 2;3 9.3294E-32 170.52 By MS/MS By matching By matching 4 3 1 1.1766 1.0886 39.678 8 Median 1.1451 1.1282 14.544 4 1 Median 1.1996 1.0466 9.3962 3 0 Median 0.35242 0.39134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68803000 31217000 37586000 57530000 25876000 31654000 9599200 4239600 5359600 1673100 1101200 571850 0 0 0 0 0 0 0 0 0 4632 1664 4816 23782;23783;23784;23785;23786;23787;23788;23789 24164;24165;24166;24167;24168;24169;24170 24166 7 DLDIYYK REMMIVMRTTELVNKDLDIYYKTLDQAIMK RTTELVNKDLDIYYKTLDQAIMKFHSMKME K D L Y K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 7 0 928.4542 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1120 1126 RAD50 DNA repair protein RAD50 yes no 2 0.023074 72.234 By MS/MS 1 1.1144 1.2041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1144 1.2041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5715000 2447000 3268000 0 0 0 0 0 0 5715000 2447000 3268000 0 0 0 0 0 0 0 0 0 4633 3561 4817 23790 24171 24171 1 DLDKADSMIR LAAGKVPQRAGEVERDLDKADSMIRLLFND GEVERDLDKADSMIRLLFNDVQTLKDGRHP R D L I R L 1 1 0 3 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 10 1 1162.5652 Q15149;H0YDN1;E9PMV1 Q15149 578 587 PLEC Plectin yes no 2 0.016338 97.635 By MS/MS By MS/MS 1 1 1.4692 1.3585 NaN 1 Median NaN NaN NaN 0 0 Median 1.4692 1.3585 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14581000 5396400 9184900 0 0 0 14581000 5396400 9184900 0 0 0 0 0 0 0 0 0 0 0 0 4634 2933 4818 23791;23792 24172;24173 24173 2 DLDLKKPIYQR IVKKNFDLRPGVIVRDLDLKKPIYQRTAAY VIVRDLDLKKPIYQRTAAYGHFGRDSFPWE R D L Q R T 0 1 0 2 0 1 0 0 0 1 2 2 0 0 1 0 0 0 1 0 0 0 11 2 1387.7823 P31153 P31153 363 373 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 3 5.2131E-05 114.5 By MS/MS 1 1.1263 1.1925 NaN 1 Median 1.1263 1.1925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15482000 7670300 7811400 15482000 7670300 7811400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4635 2202 4819 23793 24174 24174 1 DLDNAGELGR ASAFRNVNTRRATQRDLDNAGELGRSRGEQ RATQRDLDNAGELGRSRGEQEGDEEEEGHI R D L G R S 1 1 1 2 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1058.4993 O95602;B9ZVN9 O95602 1376 1385 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 5.1551E-05 135.79 By MS/MS 2 0.85635 0.92557 7.8953 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85635 0.92557 7.8953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23162000 13380000 9782000 0 0 0 0 0 0 23162000 13380000 9782000 0 0 0 0 0 0 0 0 0 4636 1781 4820 23794;23795 24175 24175 1 DLDPEVFQR SKAVQCLNTSSKEGKDLDPEVFQRLVITAR SSKEGKDLDPEVFQRLVITARSIAIMRPNN K D L Q R L 0 1 0 2 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1117.5404 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2564 2572 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.003823 81.296 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4637 3089 4821 23796 24176 24176 1 DLDSLHR LFRGGKKVSEHSGGRDLDSLHRFVLSQAKD VSEHSGGRDLDSLHRFVLSQAKDEL_____ R D L H R F 0 1 0 2 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 854.42463 Q8NBS9 Q8NBS9 416 422 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.0046223 99.919 By MS/MS By MS/MS By matching 1 1 1 1.2644 1.1592 7.4174 3 Plateau 1.2455 1.2424 NaN 1 0 Median 1.2644 1.0712 NaN 1 0 Median 1.1915 1.1592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8120600 3689100 4431500 2228800 1080500 1148200 5270100 2318300 2951900 621700 290330 331370 0 0 0 0 0 0 0 0 0 4638 3410 4822 23797;23798;23799 24177;24178;24179;24180 24180 4 DLDTGEEVTR YMPQQVAYTLLWPLRDLDTGEEVTRDFAYG LWPLRDLDTGEEVTRDFAYGETDPLIRKCM R D L T R D 0 1 0 2 0 0 2 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1133.52 Q14166 Q14166 231 240 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.00063896 98.033 By MS/MS By MS/MS By matching 2 1 1 0.90514 0.8377 19.433 4 Median 1.0054 0.97825 24.204 2 1 Median 0.98452 0.85125 NaN 1 0 Median 0.70488 0.73752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24766000 12910000 11856000 8623200 4003000 4620100 14988000 8146100 6842000 1154500 760740 393760 0 0 0 0 0 0 0 0 0 4639 2861 4823 23800;23801;23802;23803 24181;24182;24183 24183 3 DLDYYGTLLK SAVKVLMKFMEMLSKDLDYYGTLLKKLAPP EMLSKDLDYYGTLLKKLAPPLVTLLSAEPE K D L L K K 0 0 0 2 0 0 0 1 0 0 3 1 0 0 0 0 1 0 2 0 0 0 10 0 1199.6074 Q10567;C9J1E7 Q10567 273 282 AP1B1 AP-1 complex subunit beta-1 yes no 2 0.052592 27.254 By MS/MS 1 1.1031 1.1851 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1031 1.1851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2327100 1141200 1185900 0 0 0 0 0 0 2327100 1141200 1185900 0 0 0 0 0 0 0 0 0 4640 2752 4824 23804 24184 24184 1 DLEADEEDTR PSETKEVEPEPTEDKDLEADEEDTRKKDAS PTEDKDLEADEEDTRKKDASDDLDDLNFFN K D L T R K 1 1 0 3 0 0 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1191.4891 P20042 P20042 53 62 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0087066 46.158 By MS/MS By matching 1 1 1.0189 0.93958 62.282 2 Median NaN NaN NaN 0 0 Median 0.69316 0.60488 NaN 1 0 Median 1.4976 1.4595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1434200 621720 812520 0 0 0 766190 384880 381310 668060 236850 431210 0 0 0 0 0 0 0 0 0 4641 2072 4825 23805;23806 24185 24185 1 DLEADIIGDTSGHFQK QMHQLVAAYKDAYERDLEADIIGDTSGHFQ LEADIIGDTSGHFQKMLVVLLQGTREEDDV R D L Q K M 1 0 0 3 0 1 1 2 1 2 1 1 0 1 0 1 1 0 0 0 0 0 16 0 1744.8268 P08133;E5RK63;E5RJF5 P08133 141 156 ANXA6 Annexin A6;Annexin yes no 2;3 1.3882E-06 90.653 By MS/MS By MS/MS By matching 4 2 1 1.0185 0.98279 11.787 7 Median 0.98309 0.92164 7.5799 4 0 Median 1.3357 1.1235 6.2225 2 0 Median 0.98755 1.0487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71554000 33167000 38387000 41079000 20660000 20419000 28003000 11227000 16776000 2471400 1279100 1192200 0 0 0 0 0 0 0 0 0 4642 1898 4826 23807;23808;23809;23810;23811;23812;23813 24186;24187;24188;24189;24190;24191;24192;24193 24190 8 DLEAEHVEVEDTTLNR ______________________________ LEAEHVEVEDTTLNRCSCSFRVLVVSAKFE R D L N R C 1 1 1 2 0 0 4 0 1 0 2 0 0 0 0 0 2 0 0 2 0 0 16 0 1868.8752 Q9H3K6;H3BV85;A0A087WZT3;H3BTW0;A0A0B4J295;H3BVE0 Q9H3K6 15 30 BOLA2;BOLA2B BolA-like protein 2 yes no 2;3 1.2102E-08 132.08 By MS/MS By MS/MS By MS/MS 1 1 2 0.93151 0.94275 16.397 3 Plateau 0.69903 0.68046 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8456 0.85582 13.681 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25462000 13449000 12013000 6867700 4857600 2010100 0 0 0 18595000 8591300 10003000 0 0 0 0 0 0 0 0 0 4643 3955 4827 23814;23815;23816;23817 24194;24195;24196;24197;24198 24196 5 DLEAHIDSANK SMAVAARKKLEMDLKDLEAHIDSANKNRDE MDLKDLEAHIDSANKNRDEAIKQLRKLQAQ K D L N K N 2 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1211.5782 P35579 P35579 1621 1631 MYH9 Myosin-9 yes yes 2;3 2.0431E-75 221.68 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.1587 1.0768 9.7593 7 Median 1.2343 1.1755 8.1354 2 0 Median 1.145 1.0134 5.0741 3 2 Median 0.86616 0.96014 NaN 1 0 Median 1.3078 1.1787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94609000 44245000 50363000 5363500 2233100 3130400 88116000 41480000 46636000 731850 357230 374620 397420 175010 222410 0 0 0 0 0 0 4644 2244 4828 23818;23819;23820;23821;23822;23823;23824 24199;24200;24201;24202;24203;24204;24205;24206;24207 24206 9 DLEAHIDSANKNRDEAIK SMAVAARKKLEMDLKDLEAHIDSANKNRDE AHIDSANKNRDEAIKQLRKLQAQMKDCMRE K D L I K Q 3 1 2 3 0 0 2 0 1 2 1 2 0 0 0 1 0 0 0 0 0 0 18 2 2038.0079 P35579 P35579 1621 1638 MYH9 Myosin-9 yes yes 3;4 1.69E-06 65.943 By MS/MS 2 0.92899 0.98201 8.1309 2 Median 0.92899 0.98201 8.1309 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38480000 20888000 17592000 38480000 20888000 17592000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4645 2244 4829 23825;23826 24208;24209;24210;24211 24210 4 DLEAIAAR AGVLALQRKLAGTERDLEAIAARVGELTRE KLAGTERDLEAIAARVGELTREANALAAGH R D L A R V 3 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 857.46068 O15020 O15020 1007 1014 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.0069954 68.915 By MS/MS 1 1.1089 1.2312 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1089 1.2312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3024300 1607500 1416800 0 0 0 0 0 0 3024300 1607500 1416800 0 0 0 0 0 0 0 0 0 4646 1512 4830 23827 24212 24212 1 DLEALLNSK TKKEGDLIAAQARLKDLEALLNSKEAALST AQARLKDLEALLNSKEAALSTALSEKRTLE K D L S K E 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1001.5393 P02545;H0YAB0;Q3BDU5 P02545 136 144 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0040235 61.962 By matching By matching By MS/MS 1 2 2 1.0616 1.0672 26.202 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0616 1.0753 NaN 1 0 Median 0.98667 0.85506 46.54 2 0 Median 1.0658 1.0596 1.0081 2 0 Median NaN NaN NaN 0 0 Median 4747800 2216400 2531500 0 0 0 0 0 0 1100800 508580 592190 1123600 462030 661530 2523500 1245800 1277700 0 0 0 4647 1834;3010 4831 23828;23829;23830;23831;23832 24213;24214 24213 2 DLEALMFDR DYEEVEAEGANKMMKDLEALMFDRSFVGKQ ANKMMKDLEALMFDRSFVGKQFSANDKVYT K D L D R S 1 1 0 2 0 0 1 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 9 0 1108.5223 P36871;A0A3B3ITK7 P36871 444 452 PGM1 Phosphoglucomutase-1 yes no 2 0.001584 79.906 By MS/MS By matching By matching 1 1 1 1.1779 1.2244 7.5398 3 Median 1.129 1.0834 NaN 1 0 Median 1.4107 1.2244 NaN 1 0 Median 1.1779 1.243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11803000 5093200 6709400 7494400 3402400 4092000 3190000 1278700 1911300 1118200 412060 706140 0 0 0 0 0 0 0 0 0 4648 2262 4832 23833;23834;23835 24215;24216 24215 2 DLEALQAELR QELSEQQAACSGHQKDLEALQAELRALGRQ SGHQKDLEALQAELRALGRQQASSQCPGDS K D L L R A 2 1 0 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1156.6088 Q9ULE4 Q9ULE4 750 759 FAM184B Protein FAM184B yes yes 2 0.018222 37.727 By MS/MS 1 1.6368 1.6242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6368 1.6242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7757400 2519900 5237600 0 0 0 0 0 0 7757400 2519900 5237600 0 0 0 0 0 0 0 0 0 4649 4324 4833 23836 24217 24217 1 DLEAPEVQESYR AAGARPLTSPESLSRDLEAPEVQESYRQQL LSRDLEAPEVQESYRQQLRSDIQKRLQEDP R D L Y R Q 1 1 0 1 0 1 3 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 12 0 1434.6627 P46379;A0A0G2JK23;A0A024RCR6 P46379 1088 1099 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 5.3523E-06 115.78 By MS/MS 1 0.89945 0.86712 NaN 1 Median 0.89945 0.86712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9195600 4730600 4465000 9195600 4730600 4465000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4650 8 4834 23837 24218;24219 24219 2 DLEAQIEAANK ALAVASKKKMEIDLKDLEAQIEAANKARDE IDLKDLEAQIEAANKARDEVIKQLRKLQAQ K D L N K A 3 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 0 1200.5986 P35580 P35580 1628 1638 MYH10 Myosin-10 yes yes 2 0.00016513 80.688 By MS/MS By matching 1 2 1.1566 1.0249 43.85 3 Median NaN NaN NaN 0 0 Median 1.1566 1.0249 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2855 1.2045 60.596 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10716000 4602600 6113400 0 0 0 10006000 4263000 5742900 0 0 0 710010 339530 370480 0 0 0 0 0 0 4651 2245 4835 23838;23839;23840 24220;24221 24221 2 DLEASIAR KDNQQKANEVEQMIRDLEASIARYKEEYAV EVEQMIRDLEASIARYKEEYAVLISEAQAI R D L A R Y 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 873.4556 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3439 3446 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0072183 67.981 By MS/MS By MS/MS By matching 2 1 1 1.1624 1.0126 91.236 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19066 0.22084 NaN 1 0 Median 1.1624 1.0126 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.356 1.1294 NaN 1 0 Median 12093000 7854800 4237700 0 0 0 0 0 0 6621700 5100200 1521500 3654400 1858800 1795600 0 0 0 1816500 895830 920630 4652 2865 4836 23841;23842;23843;23844 24222;24223;24224 24224 3 DLEDESTPIVK EQPTSQRDRLSQVLRDLEDESTPIVKLGDA QVLRDLEDESTPIVKLGDASIAAPFTSKLS R D L V K L 0 0 0 2 0 0 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1244.6136 Q9HD20 Q9HD20 940 950 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 2 0.00070215 64.297 By MS/MS 1 0.96458 0.84802 NaN 1 Median NaN NaN NaN 0 0 Median 0.96458 0.84802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8289400 4528000 3761400 0 0 0 8289400 4528000 3761400 0 0 0 0 0 0 0 0 0 0 0 0 4653 4034 4837 23845 24225 24225 1 DLEDETLWVEER KKQLESSRAKLQISRDLEDETLWVEERLPL ISRDLEDETLWVEERLPLAQSADYGTNLQT R D L E R L 0 1 0 2 0 0 4 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 12 0 1532.6995 P11277;H0YJE6 P11277 1486 1497 SPTB Spectrin beta chain, erythrocytic yes no 3 0.064128 21.873 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 544460 544460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 544460 544460 0 4654 1960 4838 23846 24226 24226 1 DLEDEVVVSYSHPHVR EWKTRNLSSQLQTGRDLEDEVVVSYSHPHV LEDEVVVSYSHPHVRLLRQRMDRLDNLTCH R D L V R L 0 1 0 2 0 0 2 0 2 0 1 0 0 0 1 2 0 0 1 4 0 0 16 0 1879.9064 Q9NU22 Q9NU22 3279 3294 MDN1 Midasin yes yes 3 0.028697 29.58 By matching By MS/MS 1 1 0.37228 0.37723 60.85 2 Median NaN NaN NaN 0 0 Median 0.25362 0.24532 NaN 1 0 Median 0.54646 0.58005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8980600 5839500 3141100 0 0 0 1634400 1098300 536150 7346200 4741200 2605000 0 0 0 0 0 0 0 0 0 4655 4112 4839 23847;23848 24227 24227 0 DLEDGEVPQHAGK ARRESGGRPIKPPKKDLEDGEVPQHAGKKG KKDLEDGEVPQHAGKKGKLSEHLRYCDSIL K D L G K K 1 0 0 2 0 1 2 2 1 0 1 1 0 0 1 0 0 0 0 1 0 0 13 0 1393.6474 Q15059 Q15059 292 304 BRD3 Bromodomain-containing protein 3 yes yes 2;3 0.0034196 44.309 By MS/MS By matching 2 1 0.73161 0.77773 4.0967 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69845 0.75402 4.3793 2 0 Median 0.90858 0.78987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5824900 3218200 2606700 0 0 0 0 0 0 5069100 2856400 2212600 755820 361780 394030 0 0 0 0 0 0 4656 2923 4840 23849;23850;23851 24228;24229;24230;24231 24230 4 DLEDGEVPQHAGKK ARRESGGRPIKPPKKDLEDGEVPQHAGKKG KDLEDGEVPQHAGKKGKLSEHLRYCDSILR K D L K K G 1 0 0 2 0 1 2 2 1 0 1 2 0 0 1 0 0 0 0 1 0 0 14 1 1521.7423 Q15059 Q15059 292 305 BRD3 Bromodomain-containing protein 3 yes yes 3 0.05234 11.44 By MS/MS 1 0.76683 0.87615 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76683 0.87615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 904100 495160 408940 0 0 0 0 0 0 904100 495160 408940 0 0 0 0 0 0 0 0 0 4657 2923 4841 23852 24232;24233 24233 2 DLEDKEGEIQAGAK ALSEQINIFFDYSGRDLEDKEGEIQAGAKL RDLEDKEGEIQAGAKLSLNRQFFDERWSKH R D L A K L 2 0 0 2 0 1 3 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 14 1 1501.726 Q13409 Q13409 251 264 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2;3 5.0488E-39 166.14 By MS/MS By MS/MS By MS/MS 2 1 3 1.1889 1.1599 28.148 3 Plateau 0.64926 0.67071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0937 1.0684 11.807 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16531000 7206200 9324500 2823400 1476200 1347200 0 0 0 0 0 0 13707000 5730000 7977300 0 0 0 0 0 0 4658 2811 4842 23853;23854;23855;23856;23857;23858 24234;24235;24236;24237;24238;24239 24236 6 DLEDSLAR SQLQKQLAAKEAKLRDLEDSLARERDTSRR AKEAKLRDLEDSLARERDTSRRLLAEKERE R D L A R E 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 917.44543 P02545;Q3BDU5 P02545 322 329 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0074447 69.998 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1.0863 1.072 35.766 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0863 1.1206 2.7876 2 0 Median 1.4561 1.2219 NaN 1 0 Median 1.0029 1.0003 NaN 1 1 Median 0.82057 0.69771 57.254 2 0 Median 34240000 14981000 19259000 0 0 0 0 0 0 14112000 6069800 8042400 7514500 2853200 4661400 11506000 5457600 6048400 1107400 600750 506680 4659 1834;3010 4843 23859;23860;23861;23862;23863;23864;23865 24240;24241;24242;24243;24244 24244 5 DLEDTEANKEK QAINDKKRQIAAIHKDLEDTEANKEKNLEQ AIHKDLEDTEANKEKNLEQYNKLDQDLNEV K D L E K N 1 0 1 2 0 0 3 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 11 1 1290.5939 Q9UQE7 Q9UQE7 419 429 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.00089542 76.465 By MS/MS By matching By MS/MS By matching 1 2 4 2 0.94273 0.97483 9.6019 9 Median NaN NaN NaN 0 0 Median 1.1875 1.1079 NaN 1 0 Median 0.82156 0.93779 2.1195 2 0 Median 1.0939 1.0282 12.911 4 0 Median 0.89431 0.96588 2.3089 2 0 Median NaN NaN NaN 0 0 Median 8345400 3972400 4372900 0 0 0 3343500 1482100 1861300 2308200 1200800 1107400 1368000 608990 758960 1325700 680520 645170 0 0 0 4660 4362 4844 23866;23867;23868;23869;23870;23871;23872;23873;23874 24245;24246;24247;24248;24249 24245 5 DLEEAEEYKEAR EAAYLDLQRILENEKDLEEAEEYKEARLVL NEKDLEEAEEYKEARLVLDSVKLEA_____ K D L A R L 2 1 0 1 0 0 5 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1480.6682 E5RIW3;E5RJD8;O75347;E5RHG6;E5RIX8 E5RIW3 63 74 TBCA Tubulin-specific chaperone A yes no 2 0.00082435 127.4 By MS/MS 1 1.0975 0.96897 NaN 1 Median NaN NaN NaN 0 0 Median 1.0975 0.96897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1897300 902940 994390 0 0 0 1897300 902940 994390 0 0 0 0 0 0 0 0 0 0 0 0 4661 852 4845 23875 24250 24250 1 DLEEAEGR LLTDQRDEILLANKKDLEEAEGRLAAPLLK ILLANKKDLEEAEGRLAAPLLKRLSLSTSK K D L G R L 1 1 0 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 8 0 917.40904 P54886 P54886 410 417 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0035134 91.626 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1 1.2158 1.0507 16.28 10 Median 0.93138 0.91532 1.4836 2 0 Median 1.1258 0.97553 10.508 2 0 Median 1.2238 1.3065 6.469 3 0 Median 1.2191 1.0506 NaN 1 0 Median 1.3223 1.4012 NaN 1 0 Median 1.254 1.0353 NaN 1 0 Median 41400000 18609000 22791000 7287800 3574500 3713300 5627900 2501900 3126000 21180000 9298700 11881000 4279900 1928400 2351500 2625600 1116200 1509400 398780 188930 209850 4662 2488 4846 23876;23877;23878;23879;23880;23881;23882;23883;23884;23885 24251;24252;24253;24254;24255;24256;24257;24258;24259;24260;24261;24262 24255 12 DLEEDHACIPIK IIAGAGELHLEICLKDLEEDHACIPIKKSD CLKDLEEDHACIPIKKSDPVVSYRETVSEE K D L I K K 1 0 0 2 1 0 2 0 1 2 1 1 0 0 1 0 0 0 0 0 0 0 12 0 1438.6762 P13639 P13639 560 571 EEF2 Elongation factor 2 yes yes 3 0.072216 10.326 By MS/MS 2 0.9852 0.85475 25.819 2 Median NaN NaN NaN 0 0 Median 0.9852 0.85475 25.819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2601200 1385800 1215300 0 0 0 2601200 1385800 1215300 0 0 0 0 0 0 0 0 0 0 0 0 4663 1992 4847 23886;23887 24263 24263 1 DLEEFFSTVGK RTVFCMQLAARIRPRDLEEFFSTVGKVRDV IRPRDLEEFFSTVGKVRDVRMISDRNSRRS R D L G K V 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1270.6081 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;Q5QP23;Q5QP22 Q14498 168 178 RBM39 RNA-binding protein 39 yes no 2 0.0022363 54.608 By matching By matching By MS/MS By matching By MS/MS By matching 1 3 5 3 3 2 1.058 1.003 14.783 17 Median 1.0568 1.0126 NaN 1 0 Median 1.0635 0.91405 10.077 3 0 Median 1.058 1.1534 17.462 5 0 Median 1.216 1.0843 11.01 3 0 Plateau 0.96574 0.98518 1.675 3 0 Plateau 1.1598 0.98292 2.8537 2 0 Median 45366000 21877000 23489000 4760800 2223000 2537800 4200000 2019400 2180600 25204000 12255000 12949000 647850 306190 341660 9624800 4654300 4970500 928040 418840 509200 4664 2879 4848 23888;23889;23890;23891;23892;23893;23894;23895;23896;23897;23898;23899;23900;23901;23902;23903;23904 24264;24265;24266 24264 3 DLEEKLETLR PSPSKEEEGLRAQVRDLEEKLETLRLKRAE RAQVRDLEEKLETLRLKRAEDKAKLKELEK R D L L R L 0 1 0 1 0 0 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1244.6612 E7EX90;Q14203;Q6AWB1 E7EX90 209 218 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.0034649 99.802 By MS/MS By matching 1 1 0.86213 0.81138 51.109 2 Median 1.1622 1.1646 NaN 1 0 Median 0.63952 0.5653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18225000 8370000 9854600 17674000 8033200 9640500 550880 336810 214070 0 0 0 0 0 0 0 0 0 0 0 0 4665 906 4849 23905;23906 24267 24267 1 DLEGAVSR RGFSDSGGGPPAKQRDLEGAVSRLGGERRT GPPAKQRDLEGAVSRLGGERRTRRESRQES R D L S R L 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 845.4243 Q9H307;G3V5F0;G3V579 Q9H307 78 85 PNN Pinin yes no 2 0.0055542 75.109 By MS/MS 1 1.08 1.1268 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.08 1.1268 NaN 1 0 Median NaN NaN NaN 0 0 Median 5208000 3058000 2150000 0 0 0 0 0 0 0 0 0 0 0 0 5208000 3058000 2150000 0 0 0 4666 3950 4850 23907 24268;24269 24269 2 DLEGLSQR GCLETAEEVKRKLQKDLEGLSQRHEEKVAA VKRKLQKDLEGLSQRHEEKVAAYDKLEKTK K D L Q R H 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 916.46141 P35579 P35579 1393 1400 MYH9 Myosin-9 yes yes 2 0.002851 130.04 By matching By MS/MS By matching 1 3 1 1.0688 0.93831 33.492 5 Median 1.1002 1.0369 NaN 1 0 Median 1.0213 0.86649 18.249 3 0 Median 1.6488 1.6558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39093000 17530000 21563000 7631600 3172100 4459400 27834000 13111000 14723000 3627700 1246700 2381000 0 0 0 0 0 0 0 0 0 4667 2244 4851 23908;23909;23910;23911;23912 24270;24271 24270 2 DLEGSDIDTR DEEAFEDNSEEYIRRDLEGSDIDTRRRAAC EYIRRDLEGSDIDTRRRAACDLVRGLCKFF R D L T R R 0 1 0 3 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1119.5044 P55060 P55060 373 382 CSE1L Exportin-2 yes yes 2 0.00033784 98.033 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.151 1.0474 9.1734 6 Median 0.9602 0.93451 13.442 2 0 Median 1.2527 1.0635 1.0673 2 0 Median 0.97376 1.0393 NaN 1 0 Median 1.2833 1.0926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62271000 27659000 34612000 34134000 15844000 18290000 20808000 8450700 12357000 5127900 2451600 2676300 2201800 913020 1288800 0 0 0 0 0 0 4668 2493 4852 23913;23914;23915;23916;23917;23918;23919 24272;24273;24274;24275;24276;24277;24278;24279;24280;24281 24278 10 DLEGSDIDTRR DEEAFEDNSEEYIRRDLEGSDIDTRRRAAC YIRRDLEGSDIDTRRRAACDLVRGLCKFFE R D L R R R 0 2 0 3 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1275.6055 P55060 P55060 373 383 CSE1L Exportin-2 yes yes 2;3 0.026485 48.794 By MS/MS By MS/MS 3 1 1.2455 1.3553 20.448 4 Median 1.4333 1.5427 15.948 3 0 Median 1.0822 1.0434 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9608200 3818200 5790000 8229100 3265200 4963900 1379100 553060 826080 0 0 0 0 0 0 0 0 0 0 0 0 4669 2493 4853 23920;23921;23922;23923 24282;24283;24284 24284 3 DLEIDELQK LERELDDLKRLSKDKDLEIDELQKRLGSVA RLSKDKDLEIDELQKRLGSVAVKREQRENH K D L Q K R 0 0 0 2 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1101.5554 O60437;K7EKI8;K7EQ71 O60437 1630 1638 PPL Periplakin yes no 2 0.0027284 69.998 By MS/MS 1 1.3047 1.233 NaN 1 Median 1.3047 1.233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7975700 3895600 4080100 7975700 3895600 4080100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4670 1371 4854 23924 24285;24286 24285 2 DLEIERPILGQNDNK QDNLQLFLNSYNGRRDLEIERPILGQNDNK DLEIERPILGQNDNKSKTLKCSTLLVVGDN R D L N K S 0 1 2 2 0 1 2 1 0 2 2 1 0 0 1 0 0 0 0 0 0 0 15 1 1752.9006 Q9UGV2;F8WBF9;Q5TH30 Q9UGV2 234 248 NDRG3 Protein NDRG3 yes no 3 0.038284 15.758 By MS/MS 2 0.85729 0.91865 0 2 Median 0.85729 0.91865 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28332000 14342000 13990000 28332000 14342000 13990000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4671 4267 4855 23925;23926 24287 24287 1 DLEKPFLLPVEAVYSVPGR KLLDAVDTYIPVPARDLEKPFLLPVEAVYS PFLLPVEAVYSVPGRGTVVTGTLERGILKK R D L G R G 1 1 0 1 0 0 2 1 0 0 3 1 0 1 3 1 0 0 1 3 0 0 19 1 2128.1568 P49411 P49411 253 271 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.0030171 38.417 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 1 2 1 0.64271 0.64662 47.383 12 Median 0.57727 0.6067 51.528 3 0 Median 0.35132 0.33167 47.554 3 1 Median 0.543 0.58309 12.532 2 0 Median 1.0592 1.0143 NaN 1 0 Median 0.82677 0.86718 16.343 2 0 Median 1.0612 0.96577 NaN 1 0 Median 30146000 18499000 11647000 4602700 2764400 1838300 10240000 7060000 3180400 7166800 4327800 2839000 7218400 3867100 3351300 716850 376880 339970 200410 102840 97564 4672 2382 4856 23927;23928;23929;23930;23931;23932;23933;23934;23935;23936;23937;23938 24288;24289;24290;24291;24292 24292 5 DLEKWQNNLLPSR NKCGVISPRFDVQLKDLEKWQNNLLPSRQF LKDLEKWQNNLLPSRQFG____________ K D L S R Q 0 1 2 1 0 1 1 0 0 0 3 1 0 0 1 1 0 1 0 0 0 0 13 1 1611.8369 I3L3P7;P62244;H3BVC7 I3L3P7 85 97 RPS15A 40S ribosomal protein S15a yes no 2;3 0.000249 90.108 By MS/MS 3 1.0003 0.99189 8.668 2 Median 1.0003 0.99189 8.668 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9899500 5266300 4633200 9899500 5266300 4633200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4673 1289 4857 23939;23940;23941 24293;24294;24295;24296 24296 4 DLELAVPGTYDPNQPIIR SLELQYVSPKLLMCRDLELAVPGTYDPNQP LAVPGTYDPNQPIIRIQSIAPSLQVITSKQ R D L I R I 1 1 1 2 0 1 1 1 0 2 2 0 0 0 3 0 1 0 1 1 0 0 18 0 2010.0422 P42345;B1AKP8 P42345 2135 2152 MTOR Serine/threonine-protein kinase mTOR yes no 2 1.0208E-05 54.471 By MS/MS By MS/MS 1 2 1.0217 0.99756 53.538 3 Median 1.0217 0.99756 NaN 1 1 Median 1.206 1.018 75.697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5599700 2820600 2779100 3429400 1653000 1776400 2170300 1167600 1002700 0 0 0 0 0 0 0 0 0 0 0 0 4674 2310 4858 23942;23943;23944 24297;24298 24298 2 DLELAYQVHGLLK DKFFQSAMSICSSLRDLELAYQVHGLLKTG LRDLELAYQVHGLLKTGDNWKFIGPDQHRN R D L L K T 1 0 0 1 0 1 1 1 1 0 4 1 0 0 0 0 0 0 1 1 0 0 13 0 1497.8191 Q96EY7 Q96EY7 428 440 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.019859 46.891 By MS/MS 1 0.92399 0.79868 NaN 1 Median NaN NaN NaN 0 0 Median 0.92399 0.79868 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1744100 842130 901970 0 0 0 1744100 842130 901970 0 0 0 0 0 0 0 0 0 0 0 0 4675 3644 4859 23945 24299 24299 1 DLEMFAR AISELTFRQCENFAKDLEMFARHAKRTTIN RQCENFAKDLEMFARHAKRTTINTEDVKLL K D L A R H 1 1 0 1 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 880.41129 Q8N2Z9;A0A087WT10 Q8N2Z9 64 70 APITD1;APITD1-CORT Centromere protein S yes no 2 0.047302 41.502 By MS/MS 1 1.2103 1.2282 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2103 1.2282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1581900 668980 912890 0 0 0 0 0 0 1581900 668980 912890 0 0 0 0 0 0 0 0 0 4676 3363 4860 23946 24300 24300 1 DLENGSHIR VKKAILCLLLGGVERDLENGSHIRGDINIL LGGVERDLENGSHIRGDINILLIGDPSVAK R D L I R G 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1039.5047 P25205;J3KQ69;A0A499FHX9 P25205 328 336 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0044632 87.323 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4677 2129 4861 23947 24301 24301 1 DLEPESDR PLVQKSTLADYSAQKDLEPESDRSAQPLPL ADYSAQKDLEPESDRSAQPLPLKIEELALA K D L D R S 0 1 0 2 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 8 0 959.4196 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 459 466 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.036811 37.558 By MS/MS By matching 1 2 0.70222 0.73421 13.943 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8048 0.89824 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67364 0.71038 4.6655 2 0 Median NaN NaN NaN 0 0 Median 2988500 1718400 1270100 0 0 0 0 0 0 474240 283940 190300 0 0 0 2514200 1434400 1079800 0 0 0 4678 4560 4862 23948;23949;23950 24302;24303 24302 2 DLEPVLSVGVFNNK DFWRAGRKREDIQLKDLEPVLSVGVFNNKH KDLEPVLSVGVFNNKHSGLWHSGLIDKNLI K D L N K H 0 0 2 1 0 0 1 1 0 0 2 1 0 1 1 1 0 0 0 3 0 0 14 0 1529.809 O14657 O14657 242 255 TOR1B Torsin-1B yes yes 2 0.011444 33.225 By matching By MS/MS 1 2 1.3967 1.1975 33.362 3 Plateau 0.87313 0.85657 NaN 1 0 Median 0.99729 0.85777 47.181 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2948900 1546700 1402200 853390 492960 360420 2095500 1053700 1041800 0 0 0 0 0 0 0 0 0 0 0 0 4679 1487 4863 23951;23952;23953 24304 24304 1 DLEQAISQR IHSFQNLGIQCVKKRDLEQAISQRIQTNNN QCVKKRDLEQAISQRIQTNNNPFQVPIEEQ R D L Q R I 1 1 0 1 0 2 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1058.5356 Q2TAM5;E9PKH5;A0A087X0W8;Q04206;E9PI38;E9PQS6;E9PKV4;A0A087WVP0;E9PMD5 Q2TAM5 125 133 RELA Transcription factor p65 yes no 2 0.00050786 119.27 By MS/MS 1 1.4638 1.4085 NaN 1 Median 1.4638 1.4085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6810500 2496800 4313700 6810500 2496800 4313700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4680 114 4864 23954 24305;24306 24306 2 DLEQGDVSETIR LFSRIFNCNPDDMARDLEQGDVSETIRVFF MARDLEQGDVSETIRVFFEQSKSFPPAAKS R D L I R V 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1360.647 P49916;K7ERZ5;K7EQB6 P49916 344 355 LIG3 DNA ligase 3 yes no 2 3.7442E-10 179.81 By MS/MS By MS/MS 1 1 0.97003 0.92583 19.06 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76541 0.80909 NaN 1 0 Median 1.2294 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35910000 18864000 17046000 0 0 0 0 0 0 32050000 17130000 14920000 3859400 1733800 2125600 0 0 0 0 0 0 4681 2406 4865 23955;23956 24307;24308;24309 24307 3 DLEQMPQR TSNYKGMTREEREQRDLEQMPQRRRMNSTG REEREQRDLEQMPQRRRMNSTGGQTPRRDL R D L Q R R 0 1 0 1 0 2 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 8 0 1015.4757 Q96ST2;A0A1B0GW95 Q96ST2 708 715 IWS1 Protein IWS1 homolog yes no 2 0.015349 70.268 By MS/MS 1 0.56252 0.60376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56252 0.60376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1432200 932580 499610 0 0 0 0 0 0 1432200 932580 499610 0 0 0 0 0 0 0 0 0 4682 3736 4866 23957 24310 24310 1 DLESAEER MSVKAMRFPPKSYNKDLESAEERREREQQD PPKSYNKDLESAEERREREQQDLEFAKEMA K D L E R R 1 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 8 0 947.4196 O43242 O43242 504 511 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0035841 87.323 By MS/MS By matching 1 1 1.0917 0.99774 2.5389 2 Median 1.052 1.0158 NaN 1 0 Median 1.1329 0.97999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17786000 8578000 9207900 6148100 3383700 2764300 11638000 5194300 6443600 0 0 0 0 0 0 0 0 0 0 0 0 4683 1560 4867 23958;23959 24311;24312 24312 2 DLESLFHR KKREGELTVAQGRVKDLESLFHRSEVELAA VAQGRVKDLESLFHRSEVELAAALSDKRGL K D L H R S 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1015.5087 Q03252 Q03252 151 158 LMNB2 Lamin-B2 yes yes 2 0.0048619 79.116 By MS/MS 1 1.2283 1.3118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2283 1.3118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2280200 954570 1325700 0 0 0 0 0 0 2280200 954570 1325700 0 0 0 0 0 0 0 0 0 4684 2709 4868 23960 24313;24314 24314 2 DLETLPFGIALPIR ERLVVWMTNVGFTLRDLETLPFGIALPIRD RDLETLPFGIALPIRDAIYHCREQPASDWP R D L I R D 1 1 0 1 0 0 1 1 0 2 3 0 0 1 2 0 1 0 0 0 0 0 14 0 1553.8817 Q9H1A4;H0Y564 Q9H1A4 943 956 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.0011687 50.123 By matching By MS/MS By matching 1 1 1 0.78453 0.87156 12.343 3 Plateau NaN NaN NaN 0 0 Median 0.76647 0.68198 NaN 1 0 Median 0.78453 0.87156 NaN 1 0 Median 0.86923 0.75262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2712200 1513900 1198400 0 0 0 136100 71944 64158 2437600 1362600 1075000 138490 79277 59208 0 0 0 0 0 0 4685 3933 4869 23961;23962;23963 24315 24315 1 DLETSCSDIR LQGGQEATDIALLLRDLETSCSDIRQFCKK ALLLRDLETSCSDIRQFCKKIRRRMPGTDA R D L I R Q 0 1 0 2 1 0 1 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 10 0 1194.5187 E7EX90;Q14203;Q6AWB1 E7EX90 769 778 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.00039083 78.934 By MS/MS 1 1.5651 1.339 NaN 1 Median NaN NaN NaN 0 0 Median 1.5651 1.339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2276100 854060 1422000 0 0 0 2276100 854060 1422000 0 0 0 0 0 0 0 0 0 0 0 0 4686 906 4870 23964 24316 24316 1 DLEWVER NDVNGLKQCLAEFKRDLEWVERLDVTLGPV QCLAEFKRDLEWVERLDVTLGPVPEIGGSE R D L E R L 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 945.4556 H7C2Q8;Q99848 H7C2Q8 118 124 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.041295 44.447 By matching By matching By matching By MS/MS 1 1 1 1 1.3016 1.2539 11.593 4 Median NaN NaN NaN 0 0 Median 1.2511 1.1208 NaN 1 0 Median 1.3542 1.4734 NaN 1 0 Median 1.5272 1.2974 NaN 1 0 Median 1.1554 1.212 NaN 1 0 Median NaN NaN NaN 0 0 Median 7008600 3015100 3993500 0 0 0 227790 86611 141180 2232700 871980 1360700 114630 56019 58614 4433500 2000500 2433000 0 0 0 4687 1262 4871 23965;23966;23967;23968 24317 24317 1 DLFDFSTR TELEDEVRNLRKINRDLFDFSTRFITRPAK NLRKINRDLFDFSTRFITRPAK________ R D L T R F 0 1 0 2 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 8 0 999.46616 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0 U3KQC1 380 387 WDR18 WD repeat-containing protein 18 yes no 2 0.026169 42.109 By matching By MS/MS By matching 2 2 3 1.0735 1.0811 22.097 7 Median 1.7143 1.6898 0.51516 2 0 Median NaN NaN NaN 0 0 Median 1.0331 1.0793 0.22589 2 0 Median NaN NaN NaN 0 0 Median 1.0548 1.0594 11.163 3 0 Median NaN NaN NaN 0 0 Median 8738200 4039800 4698400 947870 403090 544780 0 0 0 6093300 2861900 3231400 0 0 0 1697000 774750 922260 0 0 0 4688 147 4872 23969;23970;23971;23972;23973;23974;23975 24318;24319;24320;24321 24318 4 DLFDPIIEDR VGCVAGDEESYEVFKDLFDPIIEDRHGGYK YEVFKDLFDPIIEDRHGGYKPSDEHKTDLN K D L D R H 0 1 0 3 0 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1231.6085 P12277;G3V4N7;G3V461 P12277 87 96 CKB Creatine kinase B-type yes no 2 0.00042849 89.247 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 0.79213 0.71541 8.8877 6 Median 0.64054 0.64083 NaN 1 0 Median 0.85102 0.7348 8.1715 3 0 Median 0.71677 0.78235 NaN 1 0 Median 0.79828 0.6919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42172000 22482000 19690000 2775900 1457600 1318300 24381000 12294000 12087000 14459000 8442700 6015900 556550 287550 268990 0 0 0 0 0 0 4689 1980 4873 23976;23977;23978;23979;23980;23981 24322;24323;24324;24325 24325 4 DLFDSMDK SGEMASAQYITAALRDLFDSMDKTSSSIPP YITAALRDLFDSMDKTSSSIPPIILLQFLH R D L D K T 0 0 0 3 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 8 0 969.41135 A6NJA2;P54578 A6NJA2 112 119 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.028978 40.002 By MS/MS By matching By matching 1 2 1 1.2143 1.1236 20.327 4 Median 1.2489 1.2025 NaN 1 0 Median 1.0711 0.93894 15.778 2 0 Median 1.3237 1.3474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6420400 2971500 3448900 2808000 1234300 1573800 2302100 1198000 1104100 1310300 539270 771010 0 0 0 0 0 0 0 0 0 4690 523 4874 23982;23983;23984;23985 24326 24326 1 DLFEDELVPLFEK QPSVGTEIFVGKIPRDLFEDELVPLFEKAG PRDLFEDELVPLFEKAGPIWDLRLMMDPLT R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 2 1 0 0 0 0 1 0 0 13 0 1592.7974 B7Z645;O60506;F6UXX1 O60506 172 184 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0020607 67.153 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 5 1 1 2 1.0312 1.0044 24.859 13 Median 0.87844 0.83885 NaN 1 0 Median 1.3132 1.1256 53.222 3 1 Median 1.0603 1.0509 7.0552 5 0 Median 1.0294 0.8848 NaN 1 0 Median 0.94364 0.97311 NaN 1 0 Median 1.0448 0.88626 9.1025 2 0 Median 22950000 11182000 11767000 5723000 3005100 2717900 4405400 2213800 2191600 9483100 4324100 5159000 680390 324460 355920 2170400 1092300 1078100 487640 222700 264950 4691 1619;634 4875 23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996;23997;23998 24327;24328;24329;24330;24331;24332;24333;24334;24335;24336;24337 24335 11 DLFHGATFVPR PYHKQRLAEYYGLYRDLFHGATFVPRVPLH GLYRDLFHGATFVPRVPLHVAYAVGEDDLM R D L P R V 1 1 0 1 0 0 0 1 1 0 1 0 0 2 1 0 1 0 0 1 0 0 11 0 1258.6459 Q96DV4 Q96DV4 160 170 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 3 0.0023719 47.559 By MS/MS By matching By MS/MS 1 1 1 0.93384 0.9383 63.541 3 Median 0.93384 0.9383 NaN 1 0 Median 1.785 1.5842 NaN 1 0 Median 0.41281 0.4473 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7190700 4431100 2759600 2314300 1094200 1220100 435740 141640 294110 4440600 3195200 1245400 0 0 0 0 0 0 0 0 0 4692 3629 4876 23999;24000;24001 24338;24339;24340 24338 3 DLFHIPPSYK VVALKITNNINVLIKDLFHIPPSYKSTVTL NVLIKDLFHIPPSYKSTVTLSWKPVQKVEI K D L Y K S 0 0 0 1 0 0 0 0 1 1 1 1 0 1 2 1 0 0 1 0 0 0 10 0 1215.6288 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 427 436 API5 Apoptosis inhibitor 5 yes no 2;3 0.0028612 66.692 By MS/MS 4 0.82214 0.83366 7.2742 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82214 0.83366 7.2742 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8089000 4664100 3424900 0 0 0 0 0 0 8089000 4664100 3424900 0 0 0 0 0 0 0 0 0 4693 1103 4877 24002;24003;24004;24005 24341;24342;24343;24344;24345;24346 24342 6 DLFNAIATGK DAARLSQEDPDYGIRDLFNAIATGKYPSWT DYGIRDLFNAIATGKYPSWTFYIQVMTFNQ R D L G K Y 2 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1048.5553 P04040 P04040 264 273 CAT Catalase yes yes 2 0.0049654 51.346 By MS/MS By matching By matching 1 1 1 1.0178 0.95065 10.722 3 Median 0.96895 0.93077 NaN 1 0 Median 1.312 1.1316 NaN 1 0 Median 1.0178 0.95065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7446200 3391000 4055300 3841100 1844800 1996300 2547800 1041700 1506100 1057300 504450 552820 0 0 0 0 0 0 0 0 0 4694 1841 4878 24006;24007;24008 24347;24348 24347 2 DLFPYEESK VFFFGTHETAFLGPKDLFPYEESKEKFGKP AFLGPKDLFPYEESKEKFGKPNKRKGFSEG K D L S K E 0 0 0 1 0 0 2 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 9 0 1126.5183 P51858 P51858 62 70 HDGF Hepatoma-derived growth factor yes yes 2 0.0038209 79.906 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 5 2 1 1.0749 0.93123 48.905 12 Median 1.8878 1.9818 80.777 2 0 Median 1.1627 1.0048 3.7049 2 0 Median 0.90548 0.90709 43.961 5 2 Median 1.054 0.89539 1.2616 2 0 Median NaN NaN NaN 0 0 Median 1.0894 0.91289 NaN 1 0 Median 81840000 39995000 41845000 10632000 3699300 6932900 6101300 3061200 3040100 52383000 27213000 25171000 11481000 5394800 6085800 0 0 0 1242800 626940 615880 4695 2444 4879 24009;24010;24011;24012;24013;24014;24015;24016;24017;24018;24019;24020 24349;24350;24351;24352 24350 4 DLFPYEESKEK VFFFGTHETAFLGPKDLFPYEESKEKFGKP LGPKDLFPYEESKEKFGKPNKRKGFSEGLW K D L E K F 0 0 0 1 0 0 3 0 0 0 1 2 0 1 1 1 0 0 1 0 0 0 11 1 1383.6558 P51858 P51858 62 72 HDGF Hepatoma-derived growth factor yes yes 2;3 0.0001276 82.749 By MS/MS By MS/MS By MS/MS By matching 2 4 3 1 0.93013 0.90482 33.161 10 Median 0.72802 0.67857 34.937 2 0 Median NaN NaN NaN 0 0 Median 0.87235 0.92963 4.5176 4 0 Median 1.0282 0.91552 13.008 3 0 Median NaN NaN NaN 0 0 Median 2.4144 2.0604 NaN 1 0 Median 93344000 46762000 46582000 12973000 6887100 6086100 0 0 0 54093000 27361000 26732000 25343000 12293000 13050000 0 0 0 935330 220760 714570 4696 2444 4880 24021;24022;24023;24024;24025;24026;24027;24028;24029;24030 24353;24354;24355;24356;24357;24358;24359;24360;24361;24362;24363;24364;24365;24366 24366 14 DLFPYKEYK IFFFGTHETAFLGPKDLFPYKEYKDKFGKS AFLGPKDLFPYKEYKDKFGKSNKRKGFNEG K D L Y K D 0 0 0 1 0 0 1 0 0 0 1 2 0 1 1 0 0 0 2 0 0 0 9 1 1201.6019 Q9Y3E1 Q9Y3E1 61 69 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes yes 2 0.021157 60.59 By MS/MS 1 0.87777 0.8759 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87777 0.8759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5507200 2686100 2821100 0 0 0 0 0 0 5507200 2686100 2821100 0 0 0 0 0 0 0 0 0 4697 4426 4881 24031 24367 24367 1 DLFQVAFNR KGVTDHTQRLSIITKDLFQVAFNRVARGML LSIITKDLFQVAFNRVARGMLHQDHITFAM K D L N R V 1 1 1 1 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 9 0 1108.5665 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3862 3870 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00040776 132.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 3 1 1 1.1192 1.043 13.369 14 Median 1.0454 1.022 1.051 3 0 Plateau 1.2074 1.0414 5.8971 3 0 Median 1.0143 1.0827 7.4639 3 0 Median 1.1993 1.0447 5.1536 3 0 Median 0.72122 0.7802 NaN 1 0 Median 1.7514 1.4609 NaN 1 0 Median 98343000 46843000 51500000 38893000 18867000 20025000 12548000 5526800 7021400 40936000 19697000 21239000 3796100 1659400 2136700 1610400 893380 716990 559840 198550 361300 4698 2865 4882 24032;24033;24034;24035;24036;24037;24038;24039;24040;24041;24042;24043;24044;24045 24368;24369;24370;24371;24372;24373;24374;24375;24376;24377;24378;24379 24369 12 DLFVPRPVLR IPEVHDQKADVSAWKDLFVPRPVLRALSFL VSAWKDLFVPRPVLRALSFLGFSAPTPIQA K D L L R A 0 2 0 1 0 0 0 0 0 0 2 0 0 1 2 0 0 0 0 2 0 0 10 1 1210.7186 G3V529;Q9GZR7 G3V529 153 162 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.022812 51.854 By matching By MS/MS By matching 1 1 1 1.0374 0.95266 4.1059 3 Median NaN NaN NaN 0 0 Median 1.0513 1.0135 NaN 1 0 Median 0.82447 0.95266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0374 0.93777 NaN 1 0 Median 8103300 4398900 3704400 0 0 0 186410 94153 92255 7506300 4080000 3426400 0 0 0 0 0 0 410620 224810 185810 4699 1118 4883 24046;24047;24048 24380 24380 1 DLGAYLR KLCEEWPVDETKRGRDLGAYLRQRVAQAFR VDETKRGRDLGAYLRQRVAQAFREGENTQY R D L L R Q 1 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 806.42865 Q5TAQ0;V5IRT4;Q9BRT2 Q5TAQ0 26 32 UQCC2 Ubiquinol-cytochrome-c reductase complex assembly factor 2 yes no 2 0.026776 52.683 By matching By MS/MS 1 1 1.5014 1.2277 5.1957 2 Median NaN NaN NaN 0 0 Median 1.4006 1.1834 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6095 1.2736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1858000 744180 1113800 0 0 0 1247000 484370 762660 0 0 0 610930 259810 351120 0 0 0 0 0 0 4700 3100 4884 24049;24050 24381 24381 1 DLGDLIEATEFDR RPEARRGNVKDAVLKDLGDLIEATEFDRLF LKDLGDLIEATEFDRLFEGTGARLRGMPET K D L D R L 1 1 0 3 0 0 2 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 13 0 1492.7046 E5RHM7;E5RIH5;Q6NXR4 E5RHM7 54 66 TTI2 TELO2-interacting protein 2 yes no 2 4.7841E-07 116.77 By MS/MS 2 1.4676 1.2802 4.1853 2 Median NaN NaN NaN 0 0 Median 1.4676 1.2802 4.1853 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1663000 663130 999870 0 0 0 1663000 663130 999870 0 0 0 0 0 0 0 0 0 0 0 0 4701 847 4885 24051;24052 24382;24383 24382 2 DLGEEHFK FRRDTHKSEIAHRFKDLGEEHFKGLVLIAF EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP K D L F K G 0 0 0 1 0 0 2 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 973.45051 CON__P02769 CON__P02769 37 44 yes yes 2 0.0054215 85.212 By MS/MS 1 0.04601 0.038225 NaN 1 Median NaN NaN NaN 0 0 Median 0.04601 0.038225 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52069000 49123000 2945200 0 0 0 52069000 49123000 2945200 0 0 0 0 0 0 0 0 0 0 0 0 + 4702 746 4886 24053 24384 24384 1 DLGELLQAWGAGAK LRQSWGLLGAPIQARDLGELLQAWGAGAKT RDLGELLQAWGAGAKTGAPKGSRFTHSEKF R D L A K T 3 0 0 1 0 1 1 3 0 0 3 1 0 0 0 0 0 1 0 0 0 0 14 0 1427.7409 O60826 O60826 271 284 CCDC22 Coiled-coil domain-containing protein 22 yes yes 2 0.03822 25.386 By MS/MS By matching By matching 1 1 2 1.2073 1.1032 22.609 4 Median 1.0609 1.0265 NaN 1 0 Median 1.374 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1249 0.98124 35.95 2 0 Median 3010300 1398500 1611800 1615900 790350 825560 1284400 547540 736860 0 0 0 0 0 0 0 0 0 109980 60610 49369 4703 1632 4887 24054;24055;24056;24057 24385 24385 1 DLGKFQVATDALK RSLEAQVAHADQQLRDLGKFQVATDALKSR LRDLGKFQVATDALKSREPQAKPQLDLSID R D L L K S 2 0 0 2 0 1 0 1 0 0 2 2 0 1 0 0 1 0 0 1 0 0 13 1 1404.7613 A0A087WY61;K4DIE0;Q14980 Q14980 1696 1708 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 6.5969E-06 118.4 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.96716 0.99675 17.371 6 Median NaN NaN NaN 0 0 Median 1.6518 1.3851 NaN 1 0 Median 0.97009 1.1148 19.354 2 0 Median NaN NaN NaN 0 0 Median 0.92879 0.99675 0.764 2 0 Median 0.99886 0.89136 NaN 1 0 Median 19471000 8959800 10511000 0 0 0 1610500 608620 1001900 5580700 2684300 2896400 0 0 0 11765000 5445300 6320200 514060 221680 292380 4704 2905;77 4888 24058;24059;24060;24061;24062;24063 24386;24387;24388;24389;24390 24388 5 DLGLAFEIPPHMK LDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ GKDLGLAFEIPPHMKNQALFPACVLKNAEL K D L M K N 1 0 0 1 0 0 1 1 1 1 2 1 1 1 2 0 0 0 0 0 0 0 13 0 1466.7592 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 130 142 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0010257 60.563 By matching By MS/MS By matching 1 1 1 0.76312 0.66503 41.204 3 Median 1.2303 1.347 NaN 1 0 Median 0.73882 0.65478 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76312 0.66503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246300 1158000 1088300 387830 175340 212490 1807000 954270 852770 0 0 0 51447 28381 23067 0 0 0 0 0 0 4705 135 4889 24064;24065;24066 24391 24391 1 DLGLAQDSATSTK ANNYQGGFGTTLMAKDLGLAQDSATSTKSP AKDLGLAQDSATSTKSPILLGSLAHQIYRM K D L T K S 2 0 0 2 0 1 0 1 0 0 2 1 0 0 0 2 2 0 0 0 0 0 13 0 1305.6412 P31937 P31937 285 297 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes yes 2 2.3083E-11 115.57 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4706 2206 4890 24067 24392 24392 1 DLGLSESGEDVNAAILDESGK TFAIADEEDYAGEVKDLGLSESGEDVNAAI SGEDVNAAILDESGKKFAMEPEEFDSDTLR K D L G K K 2 0 1 3 0 0 3 3 0 1 3 1 0 0 0 3 0 0 0 1 0 0 21 0 2117.9964 P13667;A0A499FI48 P13667 464 484 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.043358 19.211 By MS/MS By matching 1 1 1.3163 1.2522 39.542 2 Median 0.94418 0.94674 NaN 1 0 Median 1.8349 1.6561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1618000 719620 898340 1402900 642420 760480 215060 77201 137860 0 0 0 0 0 0 0 0 0 0 0 0 4707 1993 4891 24068;24069 24393 24393 1 DLGLSESGEDVNAAILDESGKK TFAIADEEDYAGEVKDLGLSESGEDVNAAI GEDVNAAILDESGKKFAMEPEEFDSDTLRE K D L K K F 2 0 1 3 0 0 3 3 0 1 3 2 0 0 0 3 0 0 0 1 0 0 22 1 2246.0914 P13667;A0A499FI48 P13667 464 485 PDIA4 Protein disulfide-isomerase A4 yes no 3 4.5768E-13 79.568 By MS/MS By matching By MS/MS 1 1 1 1.3199 1.3535 27.134 3 Plateau 0.93504 0.8828 NaN 1 0 Median 1.2439 1.1631 NaN 1 0 Median 1.3658 1.5189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24882000 11456000 13426000 5173300 2568000 2605300 6252600 2552600 3700000 13456000 6335800 7120600 0 0 0 0 0 0 0 0 0 4708 1993 4892 24070;24071;24072 24394;24395 24395 2 DLGNPNTAPPTPELHGINPVFLSSNPSR TSPGPLSVRAGHGERDLGNPNTAPPTPELH LHGINPVFLSSNPSRWSVEEVYEFIASLQG R D L S R W 1 1 4 1 0 0 1 2 1 1 3 0 0 1 6 3 2 0 0 1 0 0 28 0 2940.473 P78364;J3KQH6 P78364 912 939 PHC1 Polyhomeotic-like protein 1 yes no 3 5.9951E-06 37.344 By MS/MS 1 0.34944 0.3844 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34944 0.3844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4659800 3845600 814160 0 0 0 0 0 0 4659800 3845600 814160 0 0 0 0 0 0 0 0 0 4709 1318 4893 24073 24396 24396 1 DLGQIEENDLVR GNLVAGKRIAQAAGRDLGQIEENDLVRKHQ AGRDLGQIEENDLVRKHQFLAEILQWRAQA R D L V R K 0 1 1 2 0 1 2 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1399.6943 Q9P265 Q9P265 975 986 DIP2B Disco-interacting protein 2 homolog B yes yes 2 0.002872 78.655 By MS/MS By matching 2 1 0.96876 0.93535 26.941 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0499 1.1316 NaN 1 0 Median 0.8939 0.77311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5146600 3014500 2132100 0 0 0 0 0 0 4729600 2868400 1861200 417010 146130 270880 0 0 0 0 0 0 4710 4215 4894 24074;24075;24076 24397;24398 24397 1 DLGTESQIFISR IEQKFVSISDLLVPKDLGTESQIFISRTYD VPKDLGTESQIFISRTYDATTHFETTCDDI K D L S R T 0 1 0 1 0 1 1 1 0 2 1 0 0 1 0 2 1 0 0 0 0 0 12 0 1364.6936 P50395 P50395 391 402 GDI2 Rab GDP dissociation inhibitor beta yes yes 2 2.2232E-07 120.68 By MS/MS By matching By MS/MS 1 2 1 1.1375 1.0892 9.0595 4 Median 1.0782 1.02 NaN 1 0 Median 1.1375 1.077 12.6 2 0 Median 1.1908 1.1631 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59174000 26532000 32642000 20564000 9382700 11181000 11321000 5233200 6087800 27289000 11917000 15373000 0 0 0 0 0 0 0 0 0 4711 2411 4895 24077;24078;24079;24080 24399;24400;24401;24402;24403 24403 5 DLGVFIPAPMAQGMR NGPKTINQIRQDAVKDLGVFIPAPMAQGMR DLGVFIPAPMAQGMRSDFFLEGPFMPPRMK K D L M R S 2 1 0 1 0 1 0 2 0 1 1 0 2 1 2 0 0 0 0 1 0 0 15 0 1601.8058 P78344;D3DQV9;H0Y3P2;H0YCH5 P78344 333 347 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0003573 64.297 By MS/MS By MS/MS 2 1 0.83391 0.89365 9.0845 3 Median 0.88148 0.85146 12.226 2 0 Median NaN NaN NaN 0 0 Median 0.83391 0.89365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6682600 3501800 3180800 5066100 2622600 2443500 0 0 0 1616500 879190 737330 0 0 0 0 0 0 0 0 0 4712 2639 4896 24081;24082;24083 24404;24405;24406 24404 3 DLGYIYFYQR IYNDQKVCASEKPPKDLGYIYFYQRVAS__ EKPPKDLGYIYFYQRVAS____________ K D L Q R V 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 0 0 3 0 0 0 10 0 1336.6452 P45974 P45974 846 855 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.00037295 87.616 By MS/MS By MS/MS 2 2 1.1135 1.0122 16.307 4 Median 1.1595 1.1421 20.944 2 0 Median 1.1135 0.97086 9.7604 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7577300 3517700 4059700 3969500 1918600 2050900 3607800 1599000 2008800 0 0 0 0 0 0 0 0 0 0 0 0 4713 2332 4897 24084;24085;24086;24087 24407;24408 24407 2 DLHDANTDLIGR SKASLEKAGKSGVKKDLHDANTDLIGRHPK VKKDLHDANTDLIGRHPKQEKRSVFQTINQ K D L G R H 1 1 1 3 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1338.6528 P53985;Q5T8R5;Q5T8R3 P53985 225 236 SLC16A1 Monocarboxylate transporter 1 yes no 2;3 1.2827E-10 167.12 By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 1.1792 1.0281 26.129 12 Median 0.88182 0.84795 16.379 4 2 Median 1.2566 1.0542 11.039 5 0 Median 1.5099 1.6163 12.438 2 1 Median 0.88219 0.76611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 282790000 127740000 155060000 72832000 36163000 36668000 197940000 87215000 110720000 11552000 4112800 7439500 471370 246080 225290 0 0 0 0 0 0 4714 2476 4898 24088;24089;24090;24091;24092;24093;24094;24095;24096;24097;24098;24099 24409;24410;24411;24412;24413;24414;24415;24416;24417;24418;24419;24420;24421;24422;24423 24411 15 DLHDANTDLIGRHPK SKASLEKAGKSGVKKDLHDANTDLIGRHPK DLHDANTDLIGRHPKQEKRSVFQTINQFLD K D L P K Q 1 1 1 3 0 0 0 1 2 1 2 1 0 0 1 0 1 0 0 0 0 0 15 1 1700.8594 P53985;Q5T8R5;Q5T8R3 P53985 225 239 SLC16A1 Monocarboxylate transporter 1 yes no 3;4 4.5687E-10 105.19 By MS/MS By matching By MS/MS 4 1 2 0.88794 0.89586 63.065 7 Median 0.62702 0.64082 57.237 4 0 Median 1.6281 1.5165 NaN 1 0 Median 1.0833 1.2522 1.9941 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41877000 23705000 18172000 31684000 20230000 11455000 5310800 1127700 4183100 4882200 2347700 2534500 0 0 0 0 0 0 0 0 0 4715 2476 4899 24100;24101;24102;24103;24104;24105;24106 24424;24425;24426;24427;24428;24429;24430;24431 24424 8 DLHPDLEGQLK DPIDEVQGFLFGKLRDLHPDLEGQLKELRK GKLRDLHPDLEGQLKELRKHLVESTNEMAP R D L L K E 0 0 0 2 0 1 1 1 1 0 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1263.6459 Q9NYU2 Q9NYU2 292 302 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.00016774 98.044 By MS/MS By MS/MS 1 1 1.0784 0.99792 15.285 2 Median 0.92814 0.89569 NaN 1 0 Median 1.2531 1.1118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11765000 5472100 6292400 7550600 3768100 3782500 4214000 1704000 2510000 0 0 0 0 0 0 0 0 0 0 0 0 4716 4179 4900 24107;24108 24432;24433;24434 24432 3 DLHQGIEAASDEEDLR HLDLSSSEKFHELHRDLHQGIEAASDEEDL LHQGIEAASDEEDLRWWRSTHGPGMAMNWP R D L L R W 2 1 0 3 0 1 3 1 1 1 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1796.8177 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 267 282 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 3 1.5135E-07 82.007 By MS/MS By MS/MS 1 2 1.0948 0.95234 14.622 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85188 0.83328 NaN 1 1 Median 1.1915 1.0309 11.21 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28375000 15484000 12890000 0 0 0 0 0 0 23778000 13583000 10196000 4596100 1901400 2694600 0 0 0 0 0 0 4717 244 4901 24109;24110;24111 24435;24436 24435 2 DLHTLDSHVR LLFICGSKEKYRQLRDLHTLDSHVRGIKKL YRQLRDLHTLDSHVRGIKKLLEEQGIFLRA R D L V R G 0 1 0 2 0 0 0 0 2 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1191.5996 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 3229 3238 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.00020475 110.38 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6510200 0 6510200 0 0 0 6510200 0 6510200 0 0 0 0 0 0 0 0 0 0 0 0 4718 3089 4902 24112 24437 24437 1 DLIALANTAGEVLLHR QLPQEIIFLVWSPKRDLIALANTAGEVLLH LIALANTAGEVLLHRLASFHRVWSFPPNEN R D L H R L 3 1 1 1 0 0 1 1 1 1 4 0 0 0 0 0 1 0 0 1 0 0 16 0 1704.9523 Q9UJX5;D6RFM7;D6RAP6 Q9UJX5 33 48 ANAPC4 Anaphase-promoting complex subunit 4 yes no 2;3 0.00013374 57.836 By matching By matching By MS/MS By matching 2 1 2 2 1.0707 0.99054 19.894 7 Median 1.1216 1.1115 16.459 2 0 Median 1.735 1.5755 NaN 1 0 Median 0.92576 0.99211 6.5787 2 0 Median 1.1332 0.93592 8.0214 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5075800 2463100 2612800 223250 100410 122840 445540 127350 318190 4133000 2109300 2023700 274020 126030 147990 0 0 0 0 0 0 4719 4302 4903 24113;24114;24115;24116;24117;24118;24119 24438;24439;24440 24439 3 DLIDNSFNR LALGAVIASSKKAKRDLIDNSFNRYTFNED SKKAKRDLIDNSFNRYTFNEDEGELPEWFV R D L N R Y 0 1 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1092.52 Q8IY81 Q8IY81 683 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 5.413E-08 138.9 By matching By matching By MS/MS By matching 2 1 3 1 1.0909 1.0284 10.57 7 Median NaN NaN NaN 0 0 Median 1.2907 1.1439 13.592 2 0 Median 0.94636 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0085 1.0121 11.892 3 1 Median 1.2636 1.0284 NaN 1 0 Median 40186000 22489000 17696000 0 0 0 2234700 925440 1309300 10041000 4963000 5077800 0 0 0 26762000 15895000 10867000 1148200 705710 442450 4720 3338 4904 24120;24121;24122;24123;24124;24125;24126 24441;24442 24442 2 DLIDYVR AEASLPEKKGNTLSRDLIDYVRYMVENHGE KKGNTLSRDLIDYVRYMVENHGEDYKVSGS R D L V R Y 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 892.46543 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1 D6RIC3 114 120 NOP16 Nucleolar protein 16 yes no 2 0.018479 62.714 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1.2138 1.1367 7.8407 6 Median 1.1767 1.1092 NaN 1 0 Median 1.1429 0.97499 NaN 1 0 Median 1.2471 1.1649 NaN 1 0 Median 1.5102 1.2069 NaN 1 0 Median 1.1813 1.1899 NaN 1 0 Median 1.3468 1.0923 NaN 1 0 Median 21210000 9618600 11592000 1849000 945430 903550 846320 426630 419690 889300 434570 454730 154350 54029 100320 16468000 7351200 9117300 1003000 406710 596320 4721 136 4905 24127;24128;24129;24130;24131;24132 24443 24443 1 DLIEAIR LVFSKLENGGFPYEKDLIEAIRRASNGETL NGGFPYEKDLIEAIRRASNGETLEKITNSR K D L I R R 1 1 0 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 828.47052 Q9BRT3 Q9BRT3 88 94 MIEN1 Migration and invasion enhancer 1 yes yes 2 0.026776 52.683 By matching By MS/MS By matching 1 2 1 1.006 0.91575 34.826 4 Median 0.8416 0.82256 NaN 1 0 Median 0.91064 0.79767 34.701 2 0 Median 1.4021 1.4236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6518200 3376100 3142100 2047100 1142900 904150 4210000 2112000 2097900 261210 121160 140040 0 0 0 0 0 0 0 0 0 4722 3802 4906 24133;24134;24135;24136 24444 24444 1 DLIEFGMIPEFVGR DIEEKDRLLRHVEARDLIEFGMIPEFVGRL RDLIEFGMIPEFVGRLPVVVPLHSLDEKTL R D L G R L 0 1 0 1 0 0 2 2 0 2 1 0 1 2 1 0 0 0 0 1 0 0 14 0 1621.8174 O76031 O76031 486 499 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 2 0.00011607 81.865 By MS/MS By matching 1 1 0.95651 0.96841 14.888 2 Median 0.86056 0.87164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0632 1.0759 NaN 1 0 Median NaN NaN NaN 0 0 Median 1919200 1005400 913850 1722900 910260 812670 0 0 0 0 0 0 0 0 0 196280 95105 101180 0 0 0 4723 1718 4907 24137;24138 24445 24445 1 DLIHDQDEDEEEEEGQR SRGTAPSDNRVTSFRDLIHDQDEDEEEEEG IHDQDEDEEEEEGQRFYAGGSERSGQQIVG R D L Q R F 0 1 0 4 0 2 6 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 17 0 2084.8407 Q9UNZ2;F2Z2K0;R4GNE6 Q9UNZ2 77 93 NSFL1C NSFL1 cofactor p47 yes no 3 1.6908E-08 97.129 By MS/MS 1 1.0525 0.91513 NaN 1 Median NaN NaN NaN 0 0 Median 1.0525 0.91513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5215300 2505600 2709700 0 0 0 5215300 2505600 2709700 0 0 0 0 0 0 0 0 0 0 0 0 4724 4353 4908 24139 24446;24447 24446 2 DLIHDVSFDFHGR ______________________________ HKDLIHDVSFDFHGRRMATCSSDQSVKVWD K D L G R R 0 1 0 3 0 0 0 1 2 1 1 0 0 2 0 1 0 0 0 1 0 0 13 0 1556.7372 Q96EE3;K7ELV2;K7EP88;K7ENI5 Q96EE3 13 25 SEH1L Nucleoporin SEH1 yes no 3 0.0002529 62.088 By matching By MS/MS By matching 1 2 1 1.1746 1.144 29.245 4 Median NaN NaN NaN 0 0 Median 2.1755 1.8763 NaN 1 0 Median 1.1066 1.144 14.878 2 0 Median 1.1776 0.99123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11161000 5670200 5491300 0 0 0 999300 296430 702880 9884500 5258900 4625600 277650 114880 162770 0 0 0 0 0 0 4725 3634 4909 24140;24141;24142;24143 24448;24449;24450;24451 24450 4 DLIHGAPVGKPAANR VLGEKTSNLRVKTLRDLIHGAPVGKPAANR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR R D L N R A 3 1 1 1 0 0 0 2 1 1 1 1 0 0 2 0 0 0 0 1 0 0 15 1 1514.8318 Q14683;G8JLG1;H0Y7K8 Q14683 63 77 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 1.8426E-24 145.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 0.79353 0.7912 17.529 8 Median 0.88417 0.89137 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67252 0.76252 NaN 1 0 Median 0.82377 0.79525 NaN 1 0 Median 0.69314 0.78716 25.784 3 2 Median 0.84424 0.73955 12.075 2 0 Median 104130000 60062000 44066000 6245000 3170800 3074200 0 0 0 16862000 10784000 6078000 9763700 5246600 4517100 60190000 35183000 25007000 11068000 5677900 5389800 4726 2889 4910 24144;24145;24146;24147;24148;24149;24150;24151 24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465 24458 14 DLIIEQR ELLELASRMENERTKDLIIEQRFHRTIIGQ RMENERTKDLIIEQRFHRTIIGQKGERIRE K D L Q R F 0 1 0 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 885.49198 Q00341;A0A024R4E5;H0Y394;H7BZC3 Q00341 511 517 HDLBP Vigilin yes no 2 0.057914 49.358 By MS/MS 1 1.0389 0.87127 NaN 1 Median NaN NaN NaN 0 0 Median 1.0389 0.87127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7959900 4221200 3738700 0 0 0 7959900 4221200 3738700 0 0 0 0 0 0 0 0 0 0 0 0 4727 4 4911 24152 24466 24466 1 DLILADYGK TLTDEEWIKVEVQLKDLILADYGKKNNVNV VEVQLKDLILADYGKKNNVNVASLTQSEIR K D L G K K 1 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1006.5335 Q6P2Q9 Q6P2Q9 1985 1993 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.002528 71.379 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.88544 0.86266 51.886 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88544 0.97956 NaN 1 0 Median 0.6566 0.60361 91.796 2 0 Median 0.55429 0.58132 NaN 1 0 Median 1.0006 0.86266 NaN 1 0 Median 15741000 8593100 7147400 0 0 0 0 0 0 9316000 4997300 4318800 1331500 639330 692170 4664200 2735300 1928900 428790 221260 207540 4728 3157 4912 24153;24154;24155;24156;24157 24467;24468;24469;24470 24468 4 DLILADYGKK TLTDEEWIKVEVQLKDLILADYGKKNNVNV EVQLKDLILADYGKKNNVNVASLTQSEIRD K D L K K N 1 0 0 2 0 0 0 1 0 1 2 2 0 0 0 0 0 0 1 0 0 0 10 1 1134.6285 Q6P2Q9 Q6P2Q9 1985 1994 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.002078 65.305 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.99082 1.0744 15.181 6 Median 1.0063 0.99466 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93736 1.0761 4.2374 2 0 Median 1.3736 1.2837 NaN 1 1 Median 1.0277 1.1053 NaN 1 0 Median 0.90954 0.81165 NaN 1 0 Median 33384000 16550000 16834000 4389600 1507200 2882400 0 0 0 19361000 10483000 8878600 1139200 476200 662970 7209800 3482000 3727800 1284400 601920 682480 4729 3157 4913 24158;24159;24160;24161;24162;24163 24471;24472;24473;24474;24475;24476;24477 24472 7 DLILNPR SNTGEDWYVLVGVAKDLILNPRSVAGGFVY YVLVGVAKDLILNPRSVAGGFVYTYKLVNN K D L P R S 0 1 1 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 7 0 839.4865 Q15393 Q15393 912 918 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.012717 77.748 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 4 2 1 0.80873 0.73389 70.497 12 Median 0.45937 0.46119 NaN 1 0 Median 0.89777 0.75508 4.8241 2 1 Median 0.31322 0.27484 175.32 2 0 Median 0.88747 0.77687 53.09 4 0 Median 0.71548 0.73627 9.4666 2 0 Median 0.55736 0.46079 NaN 1 0 Median 37608000 20817000 16791000 1717500 1146600 570840 7437800 3648900 3788900 15956000 8393900 7562500 6767300 4225200 2542000 5370800 3194100 2176700 358430 208310 150120 4730 2946 4914 24164;24165;24166;24167;24168;24169;24170;24171;24172;24173;24174;24175 24478;24479;24480;24481;24482;24483;24484;24485;24486 24478 9 DLILPTIQK SCAPLLRYLSHSEFKDLILPTIQKSLLRSP SHSEFKDLILPTIQKSLLRSPENVIETISS K D L Q K S 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1039.6277 Q92616 Q92616 260 268 GCN1L1 Translational activator GCN1 yes yes 2 0.0078737 50.607 By MS/MS By matching By matching By matching 1 2 1 1 1.0849 0.95003 19.454 5 Median 0.77198 0.73048 NaN 1 0 Median 1.0622 0.92696 3.4761 2 0 Median 1.0945 1.2132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2645 1.0995 NaN 1 0 Median 6006400 3050900 2955500 2342400 1319800 1022600 2861000 1344900 1516100 718450 339410 379040 0 0 0 0 0 0 84552 46876 37676 4731 3544 4915 24176;24177;24178;24179;24180 24487 24487 1 DLIPYLEK AADIQRQRFLHCTEKDLIPYLEKLSDSTLK FLHCTEKDLIPYLEKLSDSTLKETLLNGVG K D L E K L 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 8 0 989.54335 O75643 O75643 1596 1603 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.025155 42.869 By matching By MS/MS By matching By matching 1 1 1 1 1.0876 0.94569 6.1532 4 Median NaN NaN NaN 0 0 Median 1.1211 0.97206 NaN 1 0 Median 0.82546 0.92004 NaN 1 0 Median 1.1526 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0551 0.91713 NaN 1 0 Median 4839000 2588200 2250700 0 0 0 705380 343050 362320 3382500 1900400 1482000 649070 299960 349110 0 0 0 102070 44811 57262 4732 1688 4916 24181;24182;24183;24184 24488 24488 1 DLIQDQNMDEK LQSSVVATSKERTRRDLIQDQNMDEKGKQR RTRRDLIQDQNMDEKGKQRNRRIFGLLMGT R D L E K G 0 0 1 3 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1347.5976 Q9H307 Q9H307 127 137 PNN Pinin yes yes 2 0.00011638 134.25 By MS/MS By MS/MS 3 1 1.0515 1.0803 3.3405 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0258 1.0537 3.2348 3 0 Median 1.3438 1.1121 NaN 1 0 Median 35614000 17143000 18471000 0 0 0 0 0 0 0 0 0 0 0 0 34280000 16621000 17658000 1334100 521820 812320 4733 3950 4917;4918 24185;24186;24187;24188 24489;24490;24491 24490 1856 3 DLIQDQNMDEKGK LQSSVVATSKERTRRDLIQDQNMDEKGKQR RRDLIQDQNMDEKGKQRNRRIFGLLMGTLQ R D L G K Q 0 0 1 3 0 2 1 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 13 1 1532.7141 Q9H307 Q9H307 127 139 PNN Pinin yes yes 2;3 9.4035E-05 156.12 By MS/MS 3 1.091 1.1664 9.3785 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.091 1.1664 9.3785 3 1 Median NaN NaN NaN 0 0 Median 38352000 18214000 20138000 0 0 0 0 0 0 0 0 0 0 0 0 38352000 18214000 20138000 0 0 0 4734 3950 4919 24189;24190;24191 24492;24493;24494;24495 24493 4 DLIQMLVQR EKIQGKITIENRSKKDLIQMLVQRGYESDP ENRSKKDLIQMLVQRGYESDPVKAWKEAQE K D L Q R G 0 1 0 1 0 2 0 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1114.6169 Q02880;E9PCY5 Q02880 1093 1101 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.001612 79.597 By matching By MS/MS By MS/MS By matching 1 1 2 2 1.0734 1.1312 13.436 6 Median 0.99166 0.9767 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93669 1.0293 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0734 1.1312 5.2044 2 0 Median 1.5554 1.3428 0.23987 2 0 Median 13861000 6750800 7110500 260310 147900 112410 0 0 0 6196700 3233300 2963400 0 0 0 7005800 3212000 3793700 398570 157620 240950 4735 2704 4920 24192;24193;24194;24195;24196;24197 24496;24497;24498;24499 24499 4 DLISHDEMFSDIYK ______________________________ RDLISHDEMFSDIYKIREIADGLCLEVEGK R D L Y K I 0 0 0 3 0 0 1 0 1 2 1 1 1 1 0 2 0 0 1 0 0 0 14 0 1711.7763 Q5W0H4;A0A0B4J2C3;P13693 Q5W0H4 6 19 TPT1 Translationally-controlled tumor protein yes no 2;3 0.00010931 82.171 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 3 4 3 2 2 1.0844 1.0205 30.489 18 Median 1.2572 1.1647 6.1233 4 0 Linear 1.0392 0.89299 1.775 3 0 Plateau 1.1475 1.0787 12.734 4 0 Median 1.0089 0.83339 9.3187 3 0 Median 1.8069 2.0665 24.252 2 1 Median 1.2964 1.0454 45.461 2 0 Median 94426000 41250000 53176000 52537000 23363000 29174000 6807600 3256800 3550800 26486000 11155000 15330000 2208600 1085500 1123100 5434700 2048400 3386300 952200 340840 611360 4736 222 4921;4922 24198;24199;24200;24201;24202;24203;24204;24205;24206;24207;24208;24209;24210;24211;24212;24213;24214;24215 24500;24501;24502;24503;24504;24505;24506;24507;24508;24509;24510;24511;24512;24513;24514;24515 24501 93 16 DLITQATLLYTMADK YVQQARKEKNKDNKKDLITQATLLYTMADK DLITQATLLYTMADKIIMYDQNHLLGRACF K D L D K I 2 0 0 2 0 1 0 0 0 1 3 1 1 0 0 0 3 0 1 0 0 0 15 0 1695.8753 Q6PD62;H0YCE8 Q6PD62 108 122 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 2 0.00032688 66.262 By matching By matching By MS/MS 1 1 1 1.0647 1.1378 4.6817 3 Plateau 1.0647 1.0805 NaN 1 0 Median 1.1438 1.0396 NaN 1 0 Median 1.0576 1.1411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2927200 1441700 1485500 564960 271120 293830 137020 63944 73077 2225200 1106600 1118600 0 0 0 0 0 0 0 0 0 4737 3168 4923 24216;24217;24218 24516;24517 24517 2 DLIVATIAVK NVVTKNKDLPESALRDLIVATIAVKYTQSN ESALRDLIVATIAVKYTQSNSVCYAKNGQV R D L V K Y 2 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1041.6434 P31939;H7C1S2 P31939 417 426 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.032874 33.263 By MS/MS By matching 1 1 1.1548 1.059 1.0807 2 Median 1.0894 1.051 NaN 1 0 Median 1.2241 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3341600 1548000 1793500 2345600 1119700 1225900 996020 428350 567670 0 0 0 0 0 0 0 0 0 0 0 0 4738 2207 4924 24219;24220 24518 24518 1 DLKDYFSK WKMFIGGLSWDTTKKDLKDYFSKFGEVVDC SWDTTKKDLKDYFSKFGEVVDCTLKLDPIT K D L S K F 0 0 0 2 0 0 0 0 0 0 1 2 0 1 0 1 0 0 1 0 0 0 8 1 1014.5022 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RD83;D6RBQ9 Q14103 112 119 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 2 0.0058112 146.81 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 3 1 1.3144 1.2086 15.71 13 Median 1.5032 1.4225 7.5054 2 0 Median 1.1599 1.0733 28.852 2 0 Median 1.1089 1.2084 11.88 3 0 Median 1.4252 1.3107 10.25 2 0 Median 1.0105 1.072 16.309 3 0 Median 1.3333 1.1349 NaN 1 0 Median 264770000 121000000 143770000 32353000 15663000 16690000 1980000 913500 1066500 91732000 42284000 49448000 51183000 20269000 30913000 85326000 41015000 44311000 2199100 858270 1340800 4739 2854;816 4925 24221;24222;24223;24224;24225;24226;24227;24228;24229;24230;24231;24232;24233 24519;24520;24521;24522;24523;24524;24525;24526;24527;24528 24528 10 DLKDYFTK GKMFVGGLSWDTSKKDLKDYFTKFGEVVDC SWDTSKKDLKDYFTKFGEVVDCTIKMDPNT K D L T K F 0 0 0 2 0 0 0 0 0 0 1 2 0 1 0 0 1 0 1 0 0 0 8 1 1028.5179 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 85 92 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 0.010917 111.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 3 1.1196 1.1061 12.018 12 Median 1.1193 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0467 1.1145 6.3075 2 0 Median 1.5504 1.3614 14.692 3 0 Median 1.0116 1.0814 5.7756 3 0 Median 1.3037 1.1315 16.185 3 0 Median 336740000 168130000 168610000 13092000 5118900 7973600 0 0 0 103620000 53248000 50375000 24085000 10871000 13214000 171420000 87952000 83471000 24519000 10939000 13580000 4740 805 4926 24234;24235;24236;24237;24238;24239;24240;24241;24242;24243;24244;24245 24529;24530;24531;24532;24533;24534;24535;24536;24537;24538;24539;24540;24541;24542 24532 14 DLKEVTPEGLQMVK PSGDRSQQKDKQSYRDLKEVTPEGLQMVKK RDLKEVTPEGLQMVKKNFEWVAERVELLLK R D L V K K 0 0 0 1 0 1 2 1 0 0 2 2 1 0 1 0 1 0 0 2 0 0 14 1 1585.8385 P22234;E9PBS1;D6RF62 P22234 233 246 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0049224 51.092 By MS/MS 1 0.8318 0.79525 NaN 1 Median 0.8318 0.79525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9995300 5273700 4721600 9995300 5273700 4721600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4741 909 4927 24246 24543 24543 1 DLKPANILVMGEGPER LDGIHYLHANWVLHRDLKPANILVMGEGPE LKPANILVMGEGPERGRVKIADMGFARLFN R D L E R G 1 1 1 1 0 0 2 2 0 1 2 1 1 0 2 0 0 0 0 1 0 0 16 1 1737.9084 Q5JQZ9;P49336;Q9BWU1;F6QTA4 Q5JQZ9 91 106 CDK19;CDK8 Cyclin-dependent kinase 8;Cyclin-dependent kinase 19 yes no 3 0.018361 21.233 By MS/MS 1 0.68509 0.76369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68509 0.76369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2608800 1488500 1120300 0 0 0 0 0 0 2608800 1488500 1120300 0 0 0 0 0 0 0 0 0 4742 2378 4928 24247 24544 24544 1 DLKPENILVTSGGTVK LRGLDFLHANCIVHRDLKPENILVTSGGTV LKPENILVTSGGTVKLADFGLARIYSYQMA R D L V K L 0 0 1 1 0 0 1 2 0 1 2 2 0 0 1 1 2 0 0 2 0 0 16 1 1669.9251 P11802;F8VYH9;F8VTV8;F8VWX7;F8VZZ0;F8VZ51;F8VXD2 P11802 140 155 CDK4 Cyclin-dependent kinase 4 yes no 2;3 2.7508E-09 113.99 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.9963 0.96699 11.843 8 Median 0.99264 0.96024 0.5088 2 0 Median 1.0832 0.97567 0.78232 2 0 Median 1.0809 1.1321 11.295 2 0 Median 0.96404 0.8465 1.8037 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89905000 43564000 46341000 68398000 33494000 34903000 11676000 5313900 6362100 9067700 4382200 4685500 763580 373920 389660 0 0 0 0 0 0 4743 1971 4929 24248;24249;24250;24251;24252;24253;24254;24255 24545;24546;24547;24548;24549;24550 24548 6 DLKPENLLLASK LESVNHCHLNGIVHRDLKPENLLLASKSKG VHRDLKPENLLLASKSKGAAVKLADFGLAI R D L S K S 1 0 1 1 0 0 1 0 0 0 4 2 0 0 1 1 0 0 0 0 0 0 12 1 1339.7711 Q13557;E9PF82;E9PBG7;D6R938;Q13554;Q13555;Q5SWX3;A0A2Q3DQE3;Q8WU40;H7BXS4;E7EQE4;D6RHX9;Q9UQM7;E9PBE8 Q13557 136 147 CAMK2D;CAMK2B;CAMK2G;CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit alpha yes no 3 0.010857 26.969 By MS/MS 1 0.69129 0.72871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69129 0.72871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2309100 1367600 941570 0 0 0 0 0 0 2309100 1367600 941570 0 0 0 0 0 0 0 0 0 4744 799 4930 24256 24551 24551 1 DLKPENVLLDAHMNAK LSGVDYCHRHMVVHRDLKPENVLLDAHMNA LKPENVLLDAHMNAKIADFGLSNMMSDGEF R D L A K I 2 0 2 2 0 0 1 0 1 0 3 2 1 0 1 0 0 0 0 1 0 0 16 1 1806.9298 Q13131;Q96E92;A0A087WXX9;P54646 Q13131 150 165 PRKAA1;PRKAA2 5-AMP-activated protein kinase catalytic subunit alpha-1;5-AMP-activated protein kinase catalytic subunit alpha-2 yes no 3 0.00016647 45.723 By MS/MS By matching 1 1 0.78172 0.77658 55.447 2 Median 1.2224 1.1494 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49991 0.52471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11574000 6031600 5542100 8987900 4741800 4246100 0 0 0 2585700 1289800 1296000 0 0 0 0 0 0 0 0 0 4745 2788 4931 24257;24258 24552 24552 1 DLKPNGANILVTEENKK TFSTEVQEFGVCEVRDLKPNGANILVTEEN KPNGANILVTEENKKEYVHLVCQMRMTGAI R D L K K E 1 0 3 1 0 0 2 1 0 1 2 3 0 0 1 0 1 0 0 1 0 0 17 2 1882.016 Q7Z6Z7;H0Y659 Q7Z6Z7 4188 4204 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 3 8.718E-05 65.225 By MS/MS 1 0.79308 0.9368 NaN 1 Median 0.79308 0.9368 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11345000 6262100 5083000 11345000 6262100 5083000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4746 3253 4932 24259 24553 24553 1 DLKPNNLLLDENGVLK LQGLEYLHQHWILHRDLKPNNLLLDENGVL LKPNNLLLDENGVLKLADFGLAKSFGSPNR R D L L K L 0 0 3 2 0 0 1 1 0 0 5 2 0 0 1 0 0 0 0 1 0 0 16 1 1793.9887 P50613;D6REC6;D6R9G1 P50613 137 152 CDK7 Cyclin-dependent kinase 7 yes no 3 0.0063196 25.823 By matching By MS/MS 1 1 0.82318 0.81511 11.904 2 Median 0.94723 0.8867 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71537 0.74931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5428000 2654100 2773900 1162600 418830 743730 0 0 0 4265400 2235300 2030100 0 0 0 0 0 0 0 0 0 4747 2419 4933 24260;24261 24554 24554 1 DLKPQNLLIDDK LQGIVFCHSRRVLHRDLKPQNLLIDDKGTI LHRDLKPQNLLIDDKGTIKLADFGLARAFG R D L D K G 0 0 1 3 0 1 0 0 0 1 3 2 0 0 1 0 0 0 0 0 0 0 12 1 1410.7718 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 128 139 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 3 0.0087447 29.55 By MS/MS By matching 1 1 0.79174 0.75865 16.366 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81454 0.85173 NaN 1 0 Median 0.76957 0.67574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8013000 3981300 4031700 0 0 0 0 0 0 7499300 3721400 3777900 513700 259880 253820 0 0 0 0 0 0 4748 1871 4934 24262;24263 24555;24556 24556 2 DLKPQNLLIDDKGTIK LQGIVFCHSRRVLHRDLKPQNLLIDDKGTI LKPQNLLIDDKGTIKLADFGLARAFGIPIR R D L I K L 0 0 1 3 0 1 0 1 0 2 3 3 0 0 1 0 1 0 0 0 0 0 16 2 1810.02 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 128 143 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 3;4 0.00021191 43.408 By matching By matching By MS/MS By MS/MS 1 2 2 1 0.97783 0.99603 15.234 6 Median 0.99922 1.0438 NaN 1 0 Median 0.87218 0.8663 13.111 2 0 Median 1.1142 1.15 0.7481 2 0 Median 0.92236 0.87315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52243000 21165000 31078000 12658000 5191700 7465900 4571100 2266300 2304800 31087000 11771000 19316000 3927800 1936500 1991300 0 0 0 0 0 0 4749 1871 4935 24264;24265;24266;24267;24268;24269 24557;24558;24559;24560 24558 4 DLKPQNLLINR LKGLGFCHSRNVLHRDLKPQNLLINRNGEL VLHRDLKPQNLLINRNGELKLADFGLARAF R D L N R N 0 1 2 1 0 1 0 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 11 1 1322.767 Q00535 Q00535 126 136 CDK5 Cyclin-dependent-like kinase 5 yes yes 2 0.00080246 79.906 By MS/MS By matching 1 1 0.97412 0.93181 15.11 2 Median 0.83233 0.83739 NaN 1 0 Median 1.1401 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16063000 8229500 7833300 14429000 7509200 6920100 1633500 720380 913150 0 0 0 0 0 0 0 0 0 0 0 0 4750 2675 4936 24270;24271 24561;24562 24561 2 DLKPQNLLINTEGAIK LQGLAFCHSHRVLHRDLKPQNLLINTEGAI LKPQNLLINTEGAIKLADFGLARAFGVPVR R D L I K L 1 0 2 1 0 1 1 1 0 2 3 2 0 0 1 0 1 0 0 0 0 0 16 1 1765.9938 G3V5T9;P24941;E7ESI2 G3V5T9 127 142 CDK2 Cyclin-dependent kinase 2 yes no 3 0.018361 21.233 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.86999 0.77384 31.543 6 Median 0.72657 0.70949 NaN 1 0 Median 0.8452 0.76156 NaN 1 0 Median 0.92168 0.96342 NaN 1 0 Median 0.8955 0.78631 NaN 1 0 Median 1.3342 1.4001 NaN 1 0 Median 0.64602 0.55152 NaN 1 0 Median 17125000 8649400 8475200 4547900 2518500 2029400 2514600 1301100 1213500 8410600 4019100 4391500 318870 169140 149730 569630 207220 362410 762870 434230 328630 4751 1120 4937 24272;24273;24274;24275;24276;24277 24563;24564;24565 24565 3 DLKPSNIFLVDTK TKGVDYIHSKKLIHRDLKPSNIFLVDTKQV HRDLKPSNIFLVDTKQVKIGDFGLVTSLKN R D L T K Q 0 0 1 2 0 0 0 0 0 1 2 2 0 1 1 1 1 0 0 1 0 0 13 1 1488.8188 P19525 P19525 414 426 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 0.0079837 33.204 By MS/MS By MS/MS By matching By matching 1 2 2 1 0.92324 0.94624 8.8085 6 Median 1.0206 0.97063 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.86706 0.96153 1.9769 2 0 Median 0.94895 0.86046 13.15 2 0 Median NaN NaN NaN 0 0 Median 0.97961 0.85019 NaN 1 0 Median 7682300 4014000 3668300 2297900 1105700 1192100 0 0 0 5112000 2791000 2321100 183410 80747 102670 0 0 0 88974 36557 52417 4752 2067 4938 24278;24279;24280;24281;24282;24283 24566;24567;24568 24567 3 DLKPSNILYVDESGNPESIR TKTVEYLHAQGVVHRDLKPSNILYVDESGN NILYVDESGNPESIRICDFGFAKQLRAENG R D L I R I 0 1 2 2 0 0 2 1 0 2 2 1 0 0 2 3 0 0 1 1 0 0 20 1 2245.1226 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 510 529 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0022593 49.12 By MS/MS 1 0.63203 0.64435 NaN 1 Median 0.63203 0.64435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1553700 1043700 509960 1553700 1043700 509960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4753 581 4939 24284 24569 24569 1 DLKPVLDSYVFNDGSSR DLTVRETVNVITLYKDLKPVLDSYVFNDGS KPVLDSYVFNDGSSRELMNLTGTIPVPYRG K D L S R E 0 1 1 3 0 0 0 1 0 0 2 1 0 1 1 3 0 0 1 2 0 0 17 1 1910.9374 F5H442;Q99816 F5H442 34 50 TSG101 Tumor susceptibility gene 101 protein yes no 3 0.036133 14.254 By MS/MS 2 0.67983 0.69817 42.105 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67983 0.69817 42.105 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6978900 3574900 3404000 0 0 0 0 0 0 6978900 3574900 3404000 0 0 0 0 0 0 0 0 0 4754 1030 4940 24285;24286 24570 24570 1 DLLAVVFYGTEK CIQSVYISKIISSDRDLLAVVFYGTEKDKN SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE R D L E K D 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 12 0 1353.718 P12956;B1AHC9 P12956 81 92 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00062172 66.435 By matching By matching By MS/MS 1 1 1 1.2191 1.0791 1.2376 3 Median 1.1124 1.0791 NaN 1 0 Median 1.2191 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.282 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1874200 920490 953750 686940 401120 285820 710060 339850 370210 0 0 0 477240 179520 297720 0 0 0 0 0 0 4755 1985 4941 24287;24288;24289 24571 24571 1 DLLDDLKSELTGK QRQEISAAFKTLFGRDLLDDLKSELTGKFE GRDLLDDLKSELTGKFEKLIVALMKPSRLY R D L G K F 0 0 0 3 0 0 1 1 0 0 4 2 0 0 0 1 1 0 0 0 0 0 13 1 1445.7613 P08758;E9PHT9 P08758 64 76 ANXA5 Annexin A5;Annexin yes no 2 0.0068375 53.683 By MS/MS By matching 2 1 1.1228 1.1821 9.9825 3 Median NaN NaN NaN 0 0 Median 1.2307 1.1072 13.068 2 0 Median 1.1228 1.1821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116270000 47683000 68590000 0 0 0 115210000 47188000 68023000 1062800 495530 567280 0 0 0 0 0 0 0 0 0 4756 1909 4942 24290;24291;24292 24572;24573 24572 2 DLLDLLVEAK LATSFFNERNINITKDLLDLLVEAKQEVPS INITKDLLDLLVEAKQEVPSWLENMAYEHH K D L A K Q 1 0 0 2 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 10 0 1127.6438 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 554 563 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.031122 33.797 By MS/MS By matching By matching By matching By matching By matching 2 4 2 1 2 2 1.0864 0.98695 19.473 13 Median 1.1069 1.0927 14.397 2 0 Median 1.2418 1.1052 22.514 4 0 Median 1.0598 1.103 26.143 2 0 Median 1.0864 0.9413 NaN 1 0 Median 1.3677 1.3666 6.9021 2 0 Median 1.0514 0.88874 2.1357 2 0 Median 13085000 5967000 7117700 1658000 758370 899640 7590000 3529900 4060000 402270 190190 212070 169660 86373 83286 2304100 945720 1358400 960680 456420 504260 4757 263 4943 24293;24294;24295;24296;24297;24298;24299;24300;24301;24302;24303;24304;24305 24574 24574 1 DLLDTVLPHLYNETK VTFNSAAHNKPSLIRDLLDTVLPHLYNETK DLLDTVLPHLYNETKVRKELIREVEMGPFK R D L T K V 0 0 1 2 0 0 1 0 1 0 4 1 0 0 1 0 2 0 1 1 0 0 15 0 1769.92 Q86VP6;A0A0C4DGH5 Q86VP6 1043 1057 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 1.9574E-09 103.34 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 1 3 1.0338 0.90147 18.221 12 Median 1.0932 1.0441 40.647 2 0 Median 1.0689 0.96112 8.5204 2 0 Median 0.83018 0.87467 1.8715 3 0 Median 0.96049 0.81858 NaN 1 0 Median 1.279 1.3123 NaN 1 0 Median 1.0825 0.93773 12.677 3 0 Median 18069000 8980400 9088700 5639000 2830200 2808800 2369100 1162900 1206300 7453800 3841600 3612200 382740 193690 189050 967020 373570 593450 1257300 578450 678870 4758 3288 4944 24306;24307;24308;24309;24310;24311;24312;24313;24314;24315;24316;24317 24575;24576;24577;24578;24579;24580;24581;24582 24575 8 DLLFKDSADGFLK DKPDNFQLFQSPHGKDLLFKDSADGFLKIP GKDLLFKDSADGFLKIPSKMDFELYLGYEY K D L L K I 1 0 0 3 0 0 0 1 0 0 3 2 0 2 0 1 0 0 0 0 0 0 13 1 1467.7609 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 315 327 yes no 2 0.0044749 74.162 By MS/MS 1 0.012495 0.012921 NaN 1 Median 0.012495 0.012921 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2156200 2135000 21183 2156200 2135000 21183 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4759 769 4945 24318 24583 24583 1 DLLFQALGR ______________________________ TVSVKRDLLFQALGRTYTDEEFDELCFEFG R D L G R T 1 1 0 1 0 1 0 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.5764 Q9NSD9 Q9NSD9 9 17 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0016555 79.116 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1.1277 1.0865 9.2886 6 Median 1.1242 1.0866 NaN 1 0 Median 1.1312 0.98047 NaN 1 0 Median 1.0003 1.0431 13.194 2 0 Median 1.2802 1.0864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3885 1.2162 NaN 1 0 Median 14735000 6524300 8211100 5976000 2558000 3418000 4286300 1852400 2433900 3732600 1808100 1924500 387970 165890 222080 0 0 0 352610 140010 212600 4760 4102 4946 24319;24320;24321;24322;24323;24324 24584;24585;24586;24587 24587 4 DLLFRDDTK TDCTSNFCLFQSNSKDLLFRDDTKCLASIA FQSNSKDLLFRDDTKCLASIAKKTYDSYLG K D L T K C 0 1 0 3 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 1 1121.5717 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 654 662 yes no 2 0.00221 104.2 By MS/MS 1 0.061651 0.063355 NaN 1 Median 0.061651 0.063355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15786000 14810000 975960 15786000 14810000 975960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4761 769 4947 24325 24588 24588 1 DLLGYLNGEASTSASIDR AATENIPVVRRPDRKDLLGYLNGEASTSAS GYLNGEASTSASIDRSAPLEIGLQRSTQVK K D L D R S 2 1 1 2 0 0 1 2 0 1 3 0 0 0 0 3 1 0 1 0 0 0 18 0 1880.9116 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640 Q6P1J9 93 110 CDC73 Parafibromin yes no 2 0.001881 34.685 By MS/MS 1 0.97365 1.0089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97365 1.0089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4281200 2199600 2081700 0 0 0 0 0 0 4281200 2199600 2081700 0 0 0 0 0 0 0 0 0 4762 3150 4948 24326 24589 24589 1 DLLHNEDRHDDYFQER ERSPSRSRESSRRHRDLLHNEDRHDDYFQE LLHNEDRHDDYFQERNREHERHRDRERDRH R D L E R N 0 2 1 4 0 1 2 0 2 0 2 0 0 1 0 0 0 0 1 0 0 0 16 1 2100.9249 Q8N684 Q8N684 440 455 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 3;4 8.1427E-06 83.106 By MS/MS By MS/MS 3 3 0.99895 1.0492 12.051 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96398 1.0412 10.555 3 0 Median 1.1492 1.0573 15.812 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84556000 42580000 41976000 0 0 0 0 0 0 68409000 35169000 33239000 16148000 7410600 8737100 0 0 0 0 0 0 4763 3385 4949 24327;24328;24329;24330;24331;24332 24590;24591;24592;24593;24594;24595 24593 6 DLLHPSLEEEK LKLIVIICFFVQLARDLLHPSLEEEKKKHK QLARDLLHPSLEEEKKKHKKKRLVQSPNSY R D L E K K 0 0 0 1 0 0 3 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1308.6561 H0YMV8;Q71UM5;C9JLI6 H0YMV8 22 32 RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 2;3 0.00011638 134.25 By MS/MS By MS/MS By MS/MS By matching 3 2 2 3 1.0425 1.0201 42.131 10 Median 0.97189 0.97377 29.993 3 0 Median 1.5238 1.3015 30.636 2 0 Median 1.3101 1.2577 33.42 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92529 0.89071 60.226 3 0 Median 81999000 38228000 43772000 20491000 11206000 9285700 13513000 5407100 8106000 19627000 7393100 12234000 0 0 0 0 0 0 28368000 14222000 14146000 4764 1200 4950 24333;24334;24335;24336;24337;24338;24339;24340;24341;24342 24596;24597;24598;24599;24600;24601;24602 24602 7 DLLHPSLEEEKKK LKLIVIICFFVQLARDLLHPSLEEEKKKHK ARDLLHPSLEEEKKKHKKKRLVQSPNSYFM R D L K K H 0 0 0 1 0 0 3 0 1 0 3 3 0 0 1 1 0 0 0 0 0 0 13 2 1564.8461 H0YMV8;Q71UM5;C9JLI6 H0YMV8 22 34 RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like yes no 2;3 0.00022032 96.015 By MS/MS By MS/MS By MS/MS 2 2 1 0.8638 0.91636 20.819 5 Median 0.60197 0.71106 19.175 2 1 Median 1.0874 0.99129 11.116 2 0 Median 0.8638 0.95765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41451000 22683000 18769000 16632000 9930700 6700900 11121000 5328400 5792400 13699000 7423500 6275400 0 0 0 0 0 0 0 0 0 4765 1200 4951 24343;24344;24345;24346;24347 24603;24604;24605;24606;24607;24608;24609 24604 7 DLLHPSPEEEK ______________________________ PLAKDLLHPSPEEEKRKHKKKRLVQSPNSY K D L E K R 0 0 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 11 0 1292.6248 P42677 P42677 6 16 RPS27 40S ribosomal protein S27 yes yes 2;3 1.3655E-26 166.34 By MS/MS By MS/MS 3 2 0.89956 0.83703 59.353 4 Median NaN NaN NaN 0 0 Median 1.5364 1.3611 87.541 2 1 Median 0.85223 0.82687 20.508 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35195000 16084000 19111000 0 0 0 23977000 9555900 14421000 11218000 6527800 4690100 0 0 0 0 0 0 0 0 0 4766 2312 4952 24348;24349;24350;24351;24352 24610;24611;24612;24613;24614;24615;24616 24615 7 DLLHPSPEEEKR ______________________________ LAKDLLHPSPEEEKRKHKKKRLVQSPNSYF K D L K R K 0 1 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 12 1 1448.726 P42677 P42677 6 17 RPS27 40S ribosomal protein S27 yes yes 3 6.6847E-06 122.7 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.82941 0.82812 15.24 7 Median 0.76399 0.78314 7.8994 2 0 Median 1.0911 1.0146 15.273 3 2 Plateau 0.82941 0.86327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77777 0.62334 NaN 1 0 Median 22761000 11687000 11074000 5249500 2960000 2289500 11727000 5487100 6240300 4866300 2706700 2159600 0 0 0 0 0 0 917840 532950 384880 4767 2312 4953 24353;24354;24355;24356;24357;24358;24359 24617;24618;24619;24620;24621;24622;24623;24624;24625 24618 9 DLLHPSPEEEKRK ______________________________ AKDLLHPSPEEEKRKHKKKRLVQSPNSYFM K D L R K H 0 1 0 1 0 0 3 0 1 0 2 2 0 0 2 1 0 0 0 0 0 0 13 2 1576.8209 P42677 P42677 6 18 RPS27 40S ribosomal protein S27 yes yes 3;4 0.00012434 74.987 By MS/MS By MS/MS By MS/MS 5 2 2 0.79746 0.86397 7.6009 5 Median 0.80969 0.88114 3.8679 3 0 Plateau 0.71812 0.76507 NaN 1 0 Median 0.82802 0.93447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39256000 17175000 22080000 18268000 7888000 10380000 9777600 4352500 5425100 11210000 4934700 6275300 0 0 0 0 0 0 0 0 0 4768 2312 4954 24360;24361;24362;24363;24364;24365;24366;24367;24368 24626;24627;24628;24629;24630;24631;24632;24633;24634;24635;24636;24637 24633 12 DLLILQQLLMR RGVHKIASTRFLICRDLLILQQLLMRLGDA LICRDLLILQQLLMRLGDAVIWGTGQLFQA R D L M R L 0 1 0 1 0 2 0 0 0 1 5 0 1 0 0 0 0 0 0 0 0 0 11 0 1354.8006 Q12769;G3V198;E9PR16 Q12769 733 743 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.0002305 73.931 By matching By MS/MS By MS/MS 2 3 2 1.183 1.2164 18.364 7 Median NaN NaN NaN 0 0 Median 1.578 1.4082 18.268 2 0 Median 1.1243 1.2164 18.337 3 0 Plateau 1.2985 1.1273 12.036 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2196400 984080 1212300 0 0 0 162710 71927 90781 1484300 706260 778030 549380 205890 343480 0 0 0 0 0 0 4769 2756 4955;4956 24369;24370;24371;24372;24373;24374;24375 24638;24639;24640 24638 1476 3 DLLLDPAWEK GSMGDYMAQEDDWDRDLLLDPAWEKQQRKT DDWDRDLLLDPAWEKQQRKTFTAWCNSHLR R D L E K Q 1 0 0 2 0 0 1 0 0 0 3 1 0 0 1 0 0 1 0 0 0 0 10 0 1198.6234 O43707;F5GXS2;K7EP19;D6RH00;P12814;P35609;A0A494C1A0;Q08043;A0A494C033;A0A494C166;A0A494C0Q3 O43707 41 50 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 2 0.014222 39.022 By MS/MS By MS/MS 1 1 0.91275 0.82824 17.401 2 Median 0.96234 0.93668 NaN 1 0 Median 0.86572 0.73235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17838000 9282600 8555500 6045400 2999500 3045800 11793000 6283100 5509700 0 0 0 0 0 0 0 0 0 0 0 0 4770 1585;1983 4957 24376;24377 24641;24642 24641 2 DLLLNTMSQEEK RLGLIEWLENTVTLKDLLLNTMSQEEKAAY TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK K D L E K A 0 0 1 1 0 1 2 0 0 0 3 1 1 0 0 1 1 0 0 0 0 0 12 0 1419.6915 P78527 P78527 3814 3825 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.8668E-09 173.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 6 3 1.254 1.1035 16.515 21 Median 0.98136 0.97526 17.586 3 0 Median 1.2981 1.1628 8.1765 4 0 Median 0.93642 0.99257 4.911 5 2 Median 1.4096 1.3314 16.66 6 0 Median 0.89261 0.91253 26.145 3 1 Median NaN NaN NaN 0 0 Median 428020000 210330000 217690000 107430000 53114000 54315000 25468000 10457000 15011000 247520000 124180000 123340000 16028000 6757900 9269600 31573000 15822000 15751000 0 0 0 4771 2647 4958;4959 24378;24379;24380;24381;24382;24383;24384;24385;24386;24387;24388;24389;24390;24391;24392;24393;24394;24395;24396;24397;24398 24643;24644;24645;24646;24647;24648;24649;24650;24651;24652;24653;24654;24655;24656;24657;24658;24659;24660;24661;24662;24663;24664;24665;24666;24667;24668;24669;24670;24671 24650 1314 29 DLLMNDR FASPMKSVVANFIVKDLLMNDRSTGEKNGK VVANFIVKDLLMNDRSTGEKNGKLWSPDEE K D L D R S 0 1 1 2 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 875.4171 Q9NTI5;Q29RF7;H0Y9L6 Q29RF7 806 812 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A no no 2 0.018478 62.717 By matching By MS/MS By matching By matching 1 1 2 1 1.0692 0.93599 32.921 5 Median NaN NaN NaN 0 0 Median 1.6239 1.4057 NaN 1 0 Median 1.0233 1.1255 NaN 1 0 Median 1.0711 0.92614 1.4965 2 0 Median 0.5618 0.57635 NaN 1 0 Median NaN NaN NaN 0 0 Median 9021500 4700600 4320900 0 0 0 1401000 626540 774460 5565500 2929800 2635600 1377300 672800 704450 677800 471430 206370 0 0 0 4772 3003;4107 4960 24399;24400;24401;24402;24403 24672 24672 1 DLLMNDRLPGKK FAAPLKSLVATFIVKDLLMNDRLPGKKTTK IVKDLLMNDRLPGKKTTKLWVPDEEVSPET K D L K K T 0 1 1 2 0 0 0 1 0 0 3 2 1 0 1 0 0 0 0 0 0 0 12 2 1398.7653 Q9NTI5 Q9NTI5 796 807 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.0099519 28.206 By matching By MS/MS 1 2 0.23801 0.25865 48.89 3 Median 0.23801 0.25865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.32619 0.36503 63.161 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176840000 160350000 16488000 55302000 50098000 5204200 0 0 0 121540000 110250000 11284000 0 0 0 0 0 0 0 0 0 4773 4107 4961 24404;24405;24406 24673 24673 1 DLLMNLGQEITR AESQAEAERALREMRDLLMNLGQEITRACE EMRDLLMNLGQEITRACEDKRRQDEEEAQV R D L T R A 0 1 1 1 0 1 1 1 0 1 3 0 1 0 0 0 1 0 0 0 0 0 12 0 1401.7286 Q53GS7 Q53GS7 320 331 GLE1 Nucleoporin GLE1 yes yes 2 4.7077E-06 102.52 By MS/MS By MS/MS By MS/MS 1 2 1 1.205 1.2128 13.33 4 Median NaN NaN NaN 0 0 Median 1.4565 1.2621 NaN 1 0 Median 1.1347 1.2075 22.386 2 0 Median NaN NaN NaN 0 0 Median 1.1001 1.1655 NaN 1 0 Median NaN NaN NaN 0 0 Median 8972600 4132700 4839900 0 0 0 3316200 1517600 1798500 2967200 1341300 1625900 0 0 0 2689200 1273700 1415500 0 0 0 4774 3031 4962 24407;24408;24409;24410 24674;24675;24676;24677;24678;24679 24679 6 DLLNMYIETEGK VELPIEANLVWQLGKDLLNMYIETEGKMIM LGKDLLNMYIETEGKMIMQDKLEKERNDAK K D L G K M 0 0 1 1 0 0 2 1 0 1 2 1 1 0 0 0 1 0 1 0 0 0 12 0 1424.6857 Q92598;A0A0A0MSM0 Q92598 609 620 HSPH1 Heat shock protein 105 kDa yes no 2 0.001379 53.683 By MS/MS By MS/MS 1 2 0.92297 0.79081 33.279 3 Median 1.2811 1.271 NaN 1 1 Median 0.83203 0.72748 11.805 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4980100 2556200 2423900 2500100 1103700 1396500 2479900 1452500 1027400 0 0 0 0 0 0 0 0 0 0 0 0 4775 3541 4963 24411;24412;24413 24680;24681;24682;24683 24682 4 DLLNTGGIQK YTLNNIIQNSYQNARDLLNTGGIQKIMAIS YQNARDLLNTGGIQKIMAISAGDAYASNKA R D L Q K I 0 0 1 1 0 1 0 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1057.5768 Q99959 Q99959 812 821 PKP2 Plakophilin-2 yes yes 2 0.0005372 92.439 By matching By matching By matching By MS/MS By matching 1 1 1 2 1 0.688 0.72149 40.361 6 Median NaN NaN NaN 0 0 Median 0.33558 0.29911 NaN 1 0 Median 0.69049 0.73696 NaN 1 0 Median 1.0022 0.86129 NaN 1 0 Median 0.74758 0.77636 13.369 2 0 Median 0.6303 0.5264 NaN 1 0 Median 12747000 7671400 5075500 0 0 0 1298900 866210 432660 2137000 1307500 829440 993280 421680 571590 7775300 4777100 2998100 542490 298860 243630 4776 3773 4964 24414;24415;24416;24417;24418;24419 24684 24684 1 DLLNWCNR ENKRPTLEGRELSLRDLLNWCNRIAHSFDS GRELSLRDLLNWCNRIAHSFDSSSLSASLN R D L N R I 0 1 2 1 1 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1089.5026 Q9NU22;Q5T795 Q9NU22 549 556 MDN1 Midasin yes no 2 0.0062036 72.234 By MS/MS 1 1.1096 1.2347 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1096 1.2347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2149400 1014800 1134600 0 0 0 0 0 0 2149400 1014800 1134600 0 0 0 0 0 0 0 0 0 4777 4112 4965 24420 24685;24686 24686 2 DLLPGEYVQMAGR VVFDSMRKHDGSTFRDLLPGEYVQMAGRAG FRDLLPGEYVQMAGRAGRRGLDPTGTVILL R D L G R A 1 1 0 1 0 1 1 2 0 0 2 0 1 0 1 0 0 0 1 1 0 0 13 0 1447.7129 Q15477 Q15477 691 703 SKIV2L Helicase SKI2W yes yes 2 0.00087106 63.283 By MS/MS By matching By matching 1 1 1 0.64774 0.62816 85.441 3 Median 0.64774 0.62816 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57952 0.6183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6542 2.7373 NaN 1 0 Median 9105900 5275300 3830700 3546400 2016100 1530300 0 0 0 5341300 3209500 2131800 0 0 0 0 0 0 218250 49723 168520 4778 2955 4966 24421;24422;24423 24687;24688 24688 2 DLLPVAVEILPVSEK VASSETSSLSLVPPKDLLPVAVEILPVSEK DLLPVAVEILPVSEKNLSLTPSAPSLTLEA K D L E K N 1 0 0 1 0 0 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 15 0 1620.9338 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 2584 2598 SRCAP Helicase SRCAP yes no 2 0.043672 23.851 By MS/MS 2 0.71722 0.79091 0.93139 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71722 0.79091 0.93139 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1540100 863040 677080 0 0 0 0 0 0 1540100 863040 677080 0 0 0 0 0 0 0 0 0 4779 3199 4967 24424;24425 24689 24689 1 DLLPYGFAIHHAGMTR VLRTEAEQCKNLELKDLLPYGFAIHHAGMT LLPYGFAIHHAGMTRVDRTLVEDLFADKHI K D L T R V 2 1 0 1 0 0 0 2 2 1 2 0 1 1 1 0 1 0 1 0 0 0 16 0 1797.8985 O75643;A0A494C1A5 O75643 776 791 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3;4 4.6293E-05 59.862 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.82035 0.79225 34.465 5 Median 0.78626 0.79225 NaN 1 0 Median 0.97246 0.8255 NaN 1 0 Median 0.53724 0.59131 61.235 2 1 Median 0.82896 0.71976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36502000 26705000 9797500 3754100 2418800 1335200 3172500 1566600 1605900 29478000 22675000 6803100 97624 44245 53380 0 0 0 0 0 0 4780 1688 4968 24426;24427;24428;24429;24430 24690;24691;24692 24690 2 DLLQADQLGSLK LKDGIQLSEYLPEVKDLLQADQLGSLKSNP EVKDLLQADQLGSLKSNPYFEFVLKANYEY K D L L K S 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1299.7034 Q8WUM0 Q8WUM0 1124 1135 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00061547 67.726 By MS/MS By MS/MS By matching By matching 1 1 1 3 1.117 1.0603 18.587 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0457 1.1147 NaN 1 0 Median 1.1931 1.0085 NaN 1 0 Median 0.91876 0.94609 NaN 1 0 Median 1.4365 1.2004 25.749 3 0 Median 25278000 12014000 13264000 0 0 0 0 0 0 20900000 10002000 10899000 1765300 818810 946480 1851300 887140 964130 761070 306030 455040 4781 3492 4969 24431;24432;24433;24434;24435;24436 24693;24694;24695;24696 24694 4 DLLQDLK IPAATTSLITMLNAKDLLQDLKFVPSDEKK LITMLNAKDLLQDLKFVPSDEKKKQGCQRE K D L L K F 0 0 0 2 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 843.47018 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2 Q6P1J9 379 385 CDC73 Parafibromin yes no 2 0.013187 76.847 By MS/MS By matching 1 1 1.1123 1.0343 0.22306 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0248 1.0327 NaN 1 0 Median 1.2074 1.0359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4979300 2373700 2605600 0 0 0 0 0 0 4586500 2196100 2390300 392850 177610 215250 0 0 0 0 0 0 4782 3150 4970 24437;24438 24697;24698 24698 2 DLLQPHR EEAKKIAKEGQLMARDLLQPHRLYCYYYQV KEGQLMARDLLQPHRLYCYYYQVLQKYAER R D L H R L 0 1 0 1 0 1 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 877.477 Q7Z4H8;H0YEM3 Q7Z4H8 450 456 KDELC2 KDEL motif-containing protein 2 yes no 2 0.025554 69.39 By MS/MS 1 1.4954 1.2931 NaN 1 Median NaN NaN NaN 0 0 Median 1.4954 1.2931 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1893400 732910 1160500 0 0 0 1893400 732910 1160500 0 0 0 0 0 0 0 0 0 0 0 0 4783 3246 4971 24439 24699 24699 1 DLLSPPTDNRPGQMDNR LDVQWVEGLKDAQMRDLLSPPTDNRPGQMD LSPPTDNRPGQMDNRSKLRNIVELRLAGLD R D L N R S 0 2 2 3 0 1 0 1 0 0 2 0 1 0 3 1 1 0 0 0 0 0 17 1 1924.9061 A0A0C4DGG3;Q8NHM5 A0A0C4DGG3 561 577 KDM2B Lysine-specific demethylase 2B yes no 3 0.00045275 49.482 By MS/MS 1 1.5448 1.785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5448 1.785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7025700 2887200 4138500 0 0 0 0 0 0 7025700 2887200 4138500 0 0 0 0 0 0 0 0 0 4784 245 4972 24440 24700 24700 1 DLLSQMHHYNAGVK EDGTLPTNNRKLNIKDLLSQMHHYNAGVKQ KDLLSQMHHYNAGVKQSALLGLKDLLSQYP K D L V K Q 1 0 1 1 0 1 0 1 2 0 2 1 1 0 0 1 0 0 1 1 0 0 14 0 1611.7828 Q9NXF1 Q9NXF1 61 74 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.00049306 46.481 By MS/MS 1 1.5815 1.7205 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5815 1.7205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14479000 5534800 8944300 0 0 0 0 0 0 14479000 5534800 8944300 0 0 0 0 0 0 0 0 0 4785 4163 4973 24441 24701 24701 1 DLLSSVSR QLRATMEAYSRMANRDLLSSVSREFSGYVE YSRMANRDLLSSVSREFSGYVESGLKTILQ R D L S R E 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 3 0 0 0 1 0 0 8 0 875.47125 P20073 P20073 390 397 ANXA7 Annexin A7 yes yes 2 0.040793 55.531 By MS/MS 1 1.1101 1.0762 NaN 1 Median 1.1101 1.0762 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7090600 3435700 3654800 7090600 3435700 3654800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4786 2073 4974 24442 24702 24702 1 DLLTDEPFSR YEAVEQLNIKAKNFRDLLTDEPFSRQDIIT AKNFRDLLTDEPFSRQDIITLQDPTNLDKF R D L S R Q 0 1 0 2 0 0 1 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 10 0 1191.5772 Q13356 Q13356 143 152 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes yes 2 0.00094065 69.954 By matching By matching By MS/MS 1 1 1 1.1869 1.0282 2.4513 3 Median 1.1869 1.0436 NaN 1 0 Median 1.2333 1.0282 NaN 1 0 Median 0.96849 0.9948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8707800 4084800 4623000 2574500 1146500 1428000 602350 270650 331710 5531000 2667600 2863300 0 0 0 0 0 0 0 0 0 4787 2807 4975 24443;24444;24445 24703;24704 24704 2 DLLTGEQFIQLR HFQRFKEHVQNNLPRDLLTGEQFIQLRREL LPRDLLTGEQFIQLRRELASVNGHSGDDGP R D L L R R 0 1 0 1 0 2 1 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1431.7722 Q86UA1 Q86UA1 258 269 PRPF39 Pre-mRNA-processing factor 39 yes yes 2 0.00047426 77.677 By MS/MS 1 1.6393 1.4206 NaN 1 Median NaN NaN NaN 0 0 Median 1.6393 1.4206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3059800 1992600 1067200 0 0 0 3059800 1992600 1067200 0 0 0 0 0 0 0 0 0 0 0 0 4788 3275 4976 24446 24705 24705 1 DLLVQQASQCLSK RMKGLEEPEMDPKSRDLLVQQASQCLSKLV SRDLLVQQASQCLSKLVQIASRTKRNFILD R D L S K L 1 0 0 1 1 3 0 0 0 0 3 1 0 0 0 2 0 0 0 1 0 0 13 0 1488.7606 Q1KMD3;H3BQZ7 Q1KMD3 509 521 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 2.352E-11 138.25 By MS/MS 3 0.95888 0.97136 4.6927 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95888 0.97136 4.6927 3 3 Median NaN NaN NaN 0 0 Median 30346000 15477000 14869000 0 0 0 0 0 0 0 0 0 0 0 0 30346000 15477000 14869000 0 0 0 4789 3002 4977 24447;24448;24449 24706;24707;24708 24707 3 DLLVQYATGK QDSDSESEDDGPTARDLLVQYATGKKSSKN GPTARDLLVQYATGKKSSKNKKKLEKAMKV R D L G K K 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 E7EW05;Q9NVU7 E7EW05 208 217 SDAD1 Protein SDA1 homolog yes no 2 0.0014621 65.305 By matching By matching By MS/MS 1 1 1 0.96993 0.95765 35.574 3 Median 1.7229 1.684 NaN 1 0 Median 0.96993 0.87271 NaN 1 0 Median 0.90061 0.95765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7210700 3288000 3922700 2596800 1030100 1566700 909800 499740 410060 3704100 1758100 1946000 0 0 0 0 0 0 0 0 0 4790 899 4978 24450;24451;24452 24709 24709 1 DLLYFDGLR AVLNNLVVASPIAARDLLYFDGLRKLIFIK SPIAARDLLYFDGLRKLIFIKKKRDSPDSE R D L L R K 0 1 0 2 0 0 0 1 0 0 3 0 0 1 0 0 0 0 1 0 0 0 9 0 1110.571 Q9Y446 Q9Y446 738 746 PKP3 Plakophilin-3 yes yes 2 0.035824 34.808 By matching By matching By MS/MS By matching 1 1 2 1 0.95217 0.92855 71.112 5 Median 0.95217 0.92855 NaN 1 0 Median 0.17326 0.2078 NaN 1 0 Median 0.90725 0.95506 20.577 2 0 Median NaN NaN NaN 0 0 Median 1.0877 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median 4380800 2650200 1730600 415270 220640 194630 248980 226230 22749 3369200 2021600 1347700 0 0 0 347260 181720 165540 0 0 0 4791 4437 4979 24453;24454;24455;24456;24457 24710 24710 1 DLMLMSHLQDNIQHADPPVQILYNR HIYHHALHSRWYQARDLMLMSHLQDNIQHA NIQHADPPVQILYNRTMVQLGICAFRQGLT R D L N R T 1 1 2 3 0 3 0 0 2 2 4 0 2 0 2 1 0 0 1 1 0 0 25 0 2960.4637 Q99613;B5ME19 Q99613 587 611 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3;4 0.029316 12.196 By MS/MS By MS/MS 2 2 0.79645 0.7328 9.7207 4 Median 0.68439 0.68116 15.107 2 0 Median 0.86037 0.7328 1.3581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9949900 5604500 4345400 3592800 2226800 1365900 6357100 3377600 2979500 0 0 0 0 0 0 0 0 0 0 0 0 4792 3757 4980 24458;24459;24460;24461 24711;24712;24713 24712 3 DLMSWINGIR LGDSHDLQRFLSDFRDLMSWINGIRGLVSS LSDFRDLMSWINGIRGLVSSDELAKDVTGA R D L I R G 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 10 0 1203.607 A0A0D9SF54;Q13813 Q13813 1350 1359 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.011836 42.109 By MS/MS By matching By MS/MS By matching 2 3 3 2 1.1007 1.0805 24.965 10 Median 1.3635 1.3551 6.1332 2 0 Median 1.3556 1.117 25.131 3 0 Median 0.9444 1.0481 30.829 3 0 Median 1.1007 0.9573 1.9564 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14135000 6337700 7797300 1692600 678840 1013700 8409300 3567000 4842300 3651000 1908100 1742900 382180 183820 198360 0 0 0 0 0 0 4793 264;2838 4981;4982 24462;24463;24464;24465;24466;24467;24468;24469;24470;24471 24714;24715;24716 24714 118 3 DLMTDLKSEISGDLAR QRQQIRQTFKSHFGRDLMTDLKSEISGDLA LMTDLKSEISGDLARLILGLMMPPAHYDAK R D L A R L 1 1 0 3 0 0 1 1 0 1 3 1 1 0 0 2 1 0 0 0 0 0 16 1 1762.8771 E5RK69;P08133;E7EMC6 P08133 412 427 ANXA6 Annexin;Annexin A6 no no 2;3 3.225E-09 104.32 By MS/MS By MS/MS 4 2 1.098 1.1156 11.627 6 Median 1.0375 1.0478 7.3175 4 1 Median 1.3874 1.2718 3.4813 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19002000 8979800 10023000 12847000 6545700 6300900 6155800 2434100 3721700 0 0 0 0 0 0 0 0 0 0 0 0 4794 1898;854 4983 24472;24473;24474;24475;24476;24477 24717;24718;24719;24720;24721;24722 24722 6 DLMTLPIQNK LGDVHDFLLRLFLDRDLMTLPIQNKLAPFI LFLDRDLMTLPIQNKLAPFIAKRRTPKIQE R D L N K L 0 0 1 1 0 1 0 0 0 1 2 1 1 0 1 0 1 0 0 0 0 0 10 0 1171.6271 P22830;K7ELX4;A0A499FJN5 P22830 97 106 FECH Ferrochelatase, mitochondrial yes no 2 0.0056399 50.127 By MS/MS 1 0.60888 0.64872 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60888 0.64872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4325500 2640400 1685000 0 0 0 0 0 0 4325500 2640400 1685000 0 0 0 0 0 0 0 0 0 4795 2106 4984 24478 24723;24724 24724 2 DLMVGDEASELR PIIRSTTKVGNIEIKDLMVGDEASELRSML EIKDLMVGDEASELRSMLEVNYPMENGIVR K D L L R S 1 1 0 2 0 0 2 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 0 1333.6184 P61160 P61160 54 65 ACTR2 Actin-related protein 2 yes yes 2 7.8154E-06 147.75 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.2431 1.0917 6.4386 7 Median NaN NaN NaN 0 0 Median 1.2517 1.0823 1.2332 2 0 Median 0.94073 1.031 8.0743 2 0 Median 1.316 1.1601 5.0466 2 0 Median 0.86357 1.1378 NaN 1 0 Median NaN NaN NaN 0 0 Median 83288000 44179000 39109000 0 0 0 4804800 2085300 2719500 70714000 38284000 32429000 3123800 1282100 1841700 4645900 2527100 2118800 0 0 0 4796 2546 4985;4986 24479;24480;24481;24482;24483;24484;24485 24725;24726;24727;24728;24729;24730;24731;24732;24733 24728 1221 9 DLNAAEALQR RVQHKQQQLPDGTGRDLNAAEALQRRHCAY DGTGRDLNAAEALQRRHCAYEHDIQALSPQ R D L Q R R 3 1 1 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1099.5622 O15020 O15020 1831 1840 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00086486 90.761 By MS/MS 1 0.45875 0.49999 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45875 0.49999 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15449000 9929100 5520100 0 0 0 0 0 0 15449000 9929100 5520100 0 0 0 0 0 0 0 0 0 4797 1512 4987 24486 24734 24734 1 DLNFEVR DHVPLATPNGDVLIRDLNFEVRSGANVLIC PNGDVLIRDLNFEVRSGANVLICGPNGCGK R D L V R S 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 891.44503 P28288 P28288 458 464 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.031276 49.358 By matching By MS/MS 1 1 1.3949 1.4209 31.777 2 Median 1.1466 1.1349 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6971 1.7788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4783600 1964500 2819100 1864300 824940 1039400 0 0 0 2919300 1139500 1779700 0 0 0 0 0 0 0 0 0 4798 2163 4988 24487;24488 24735 24735 1 DLNHVCVISETGK KFVVGYALDYNEYFRDLNHVCVISETGKAK FRDLNHVCVISETGKAKYKA__________ R D L G K A 0 0 1 1 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1470.7137 P00492 P00492 201 213 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2;3 9.4358E-07 100.04 By matching By MS/MS 1 2 1.0828 0.90913 16.642 3 Median 0.83037 0.77749 NaN 1 0 Median 1.1816 0.99287 12.462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14281000 7347000 6933800 3582800 2393500 1189300 10698000 4953500 5744600 0 0 0 0 0 0 0 0 0 0 0 0 4799 1822 4989 24489;24490;24491 24736;24737;24738;24739 24738 4 DLNLMAPGLTIQAVR LFDQIDENLKQALQKDLNLMAPGLTIQAVR DLNLMAPGLTIQAVRVTKPKIPEAIRRNFE K D L V R V 2 1 1 1 0 1 0 1 0 1 3 0 1 0 1 0 1 0 0 1 0 0 15 0 1610.8814 O75477;B0QZ43 O75477 157 171 ERLIN1 Erlin-1 yes no 2 1.5497E-05 74.76 By MS/MS By MS/MS 1 1 0.99564 0.91769 4.3135 2 Median 0.89514 0.89013 NaN 1 1 Median 1.1074 0.94612 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5434300 2565500 2868700 4022400 1971300 2051100 1411800 594230 817610 0 0 0 0 0 0 0 0 0 0 0 0 4800 1675 4990 24492;24493 24740;24741 24741 538 2 DLNPDVNVFQR CCVSELGELGKVQFRDLNPDVNVFQRKFVN VQFRDLNPDVNVFQRKFVNEVRRCEEMDRK R D L Q R K 0 1 2 2 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 11 0 1315.6521 Q93050;B7Z641;B7Z2A9;K7EM24;K7ELZ6;K7EQW2 Q93050 39 49 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.00014632 116.52 By MS/MS By MS/MS By MS/MS 1 3 1 1.0591 0.95385 8.8699 5 Median 1.0609 1.0311 NaN 1 0 Median 1.0591 0.93456 6.1057 3 1 Median 1.0087 1.0666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48584000 24764000 23820000 23514000 12247000 11268000 16724000 8141300 8582300 8346200 4376100 3970100 0 0 0 0 0 0 0 0 0 4801 3576 4991 24494;24495;24496;24497;24498 24742;24743;24744;24745;24746;24747 24742 6 DLNQLFQQDSSSR QMTIQALQDELRIQRDLNQLFQQDSSSRTG QRDLNQLFQQDSSSRTGEPCVAELTEENFQ R D L S R T 0 1 1 2 0 3 0 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 13 0 1536.7168 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 241 253 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 1.9408E-05 94.616 By MS/MS 1 0.8872 0.85788 NaN 1 Median 0.8872 0.85788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4556400 2356700 2199700 4556400 2356700 2199700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4802 3311 4992 24499 24748;24749 24748 2 DLNSDMDSILASLK SGKGFYIYQEGVKRKDLNSDMDSILASLKL KDLNSDMDSILASLKLPPKSEVSSDEDIQF K D L L K L 1 0 1 3 0 0 0 0 0 1 3 1 1 0 0 3 0 0 0 0 0 0 14 0 1520.7392 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 647 660 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00018152 78.908 By MS/MS By MS/MS By matching By matching By matching 1 4 1 1 1 1.3356 1.209 19.402 7 Median 1.0624 1.0359 NaN 1 0 Median 1.4095 1.2332 21.157 3 0 Plateau 1.1307 1.209 NaN 1 0 Median 1.446 1.2681 NaN 1 0 Median 1.5383 1.582 NaN 1 0 Median NaN NaN NaN 0 0 Median 9799300 4292500 5506800 2799800 1400600 1399100 5724000 2341900 3382000 743790 343900 399900 81189 28719 52470 450630 177330 273300 0 0 0 4803 1180 4993;4994 24500;24501;24502;24503;24504;24505;24506;24507 24750;24751;24752;24753 24752 393 4 DLNSQADSLMTSSAFDTSQVK QLLEADISAHEDRLKDLNSQADSLMTSSAF DSLMTSSAFDTSQVKDKRDTINGRFQKIKS K D L V K D 2 0 1 3 0 2 0 0 0 0 2 1 1 1 0 5 2 0 0 1 0 0 21 0 2244.0216 A0A0D9SF54;Q13813 Q13813 1716 1736 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 6.6334E-17 100.54 By MS/MS By matching By MS/MS By matching By matching 2 1 4 3 1 1.04 1.022 16.046 11 Median 1.3778 1.3396 5.7902 2 0 Median 0.8682 0.76737 NaN 1 0 Median 0.92715 1.0279 5.5123 4 2 Median 1.1122 1.0077 2.6382 3 0 Plateau 1.1098 1.174 NaN 1 0 Median NaN NaN NaN 0 0 Median 35480000 17258000 18222000 4006000 1589700 2416300 646900 291660 355250 28097000 14160000 13936000 975900 458830 517070 1754900 757570 997290 0 0 0 4804 264;2838 4995;4996 24508;24509;24510;24511;24512;24513;24514;24515;24516;24517;24518 24754;24755;24756;24757;24758;24759;24760;24761 24760 119 8 DLNSQLEYLR QQYRSAVCKLDSVNKDLNSQLEYLRTPDMR DSVNKDLNSQLEYLRTPDMRKKKQELDEHE K D L L R T 0 1 1 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1249.6303 A6NHR9;A0A2R8YCU7 A6NHR9 1925 1934 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00057505 98.033 By MS/MS By MS/MS By matching 1 1 1 1.0903 1.0026 3.3121 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9199 1.0026 NaN 1 0 Median 1.0903 0.96212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1377 0.939 NaN 1 0 Median 14329000 7095500 7233100 0 0 0 0 0 0 13135000 6561500 6573500 971100 420790 550310 0 0 0 222450 113160 109290 4805 518 4997 24519;24520;24521 24762;24763;24764;24765 24763 4 DLNSYLEDK VDGHSSKNDIHTLLKDLNSYLEDKVYLTGY IHTLLKDLNSYLEDKVYLTGYNFTLADILL K D L D K V 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1095.5084 O43324;D6RBD7;C9J1V9;H0YAL7 O43324 97 105 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.0056451 70.919 By MS/MS 1 1.0819 0.92925 NaN 1 Median NaN NaN NaN 0 0 Median 1.0819 0.92925 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3891500 1827200 2064400 0 0 0 3891500 1827200 2064400 0 0 0 0 0 0 0 0 0 0 0 0 4806 1566 4998 24522 24766 24766 1 DLNYCFSGMSDHR GYNDGYGFGSDRFGRDLNYCFSGMSDHRYG GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC R D L H R Y 0 1 1 2 1 0 0 1 1 0 1 0 1 1 0 2 0 0 1 0 0 0 13 0 1600.6399 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;P55795 P31943 263 275 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 4.1619E-10 175.15 By matching By matching By MS/MS By matching 2 2 5 1 1.0478 1.0347 18.197 10 Median NaN NaN NaN 0 0 Median 1.3971 1.2181 20.428 2 0 Median 0.84976 0.85465 32.971 2 0 Median NaN NaN NaN 0 0 Median 0.97982 0.99769 4.9085 5 0 Median 1.3262 1.1394 NaN 1 0 Median 97980000 45432000 52548000 0 0 0 1960900 786020 1174800 7619400 3753700 3865700 0 0 0 87689000 40582000 47107000 710420 310720 399700 4807 1136;2502 4999;5000 24523;24524;24525;24526;24527;24528;24529;24530;24531;24532 24767;24768;24769;24770;24771;24772 24772 378 6 DLPDEIPLPLVIGTK RLLQQRKVADVSQFKDLPDEIPLPLVIGTK DLPDEIPLPLVIGTKVTARLRGVHDGLFTG K D L T K V 0 0 0 2 0 0 1 1 0 2 3 1 0 0 3 0 1 0 0 1 0 0 15 0 1618.9182 Q5TKA1;H0Y322;C9J5J4;H7C4T7 Q5TKA1 211 225 LIN9 Protein lin-9 homolog yes no 2 0.034254 24.853 By MS/MS By matching 1 2 0.63439 0.605 5.543 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58917 0.605 NaN 1 0 Median 0.67453 0.58715 7.4482 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2113700 1293000 820750 0 0 0 0 0 0 1795500 1107800 687720 318230 185200 133030 0 0 0 0 0 0 4808 3106 5001 24533;24534;24535 24773 24773 1 DLPDVQELITQVR NEVNSDAGAFKNSLKDLPDVQELITQVRSE LKDLPDVQELITQVRSEKCSLQAAAILDAN K D L V R S 0 1 0 2 0 2 1 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 13 0 1524.8148 Q9UHB9 Q9UHB9 509 521 SRP68 Signal recognition particle subunit SRP68 yes yes 2 3.3165E-05 91.855 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.95563 0.89775 21.122 6 Median 0.90525 0.90886 1.8963 2 0 Median 0.80005 0.69092 31.796 2 1 Median NaN NaN NaN 0 0 Median 1.0664 0.89875 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1794 0.99379 NaN 1 0 Median 11691000 5501300 6190100 2684600 1228300 1456300 8419900 3998700 4421200 0 0 0 533700 250870 282820 0 0 0 53244 23471 29773 4809 4274 5002 24536;24537;24538;24539;24540;24541 24774;24775;24776;24777;24778;24779 24777 6 DLPEHAVLK DYKQRTQKKAEVEGKDLPEHAVLKMKGNFT AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K D L L K M 1 0 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1020.5604 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 627 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.00081314 96.492 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 5 6 1.032 0.91516 13.018 20 Median 0.87339 0.84214 NaN 1 0 Median 1.066 0.89093 NaN 1 0 Median 0.94025 1.0052 15.763 3 0 Median 1.3359 1.1427 10.829 4 1 Median 0.87216 0.88613 4.0146 5 0 Median 1.1158 0.91013 10.02 6 0 Median 744800000 374300000 370490000 19692000 10326000 9366700 91119000 42665000 48455000 77267000 40227000 37039000 59601000 27051000 32551000 347770000 183960000 163810000 149350000 70078000 79276000 4810 2680 5003 24542;24543;24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561 24780;24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794;24795;24796;24797;24798;24799;24800;24801;24802;24803;24804;24805;24806;24807;24808;24809;24810;24811;24812;24813 24807 34 DLPELALDTPR MSTTDVEKSFDKLLKDLPELALDTPRAPQL KLLKDLPELALDTPRAPQLVGQFIARAVGD K D L P R A 1 1 0 2 0 0 1 0 0 0 3 0 0 0 2 0 1 0 0 0 0 0 11 0 1238.6507 Q53EL6 Q53EL6 246 256 PDCD4 Programmed cell death protein 4 yes yes 2 0.0063927 60.518 By MS/MS By MS/MS 1 1 0.62948 0.63579 2.571 2 Median 0.62576 0.62434 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63322 0.64746 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9020700 5490700 3530000 2704300 1581300 1123000 0 0 0 6316400 3909400 2407000 0 0 0 0 0 0 0 0 0 4811 3026 5004 24562;24563 24814;24815 24814 2 DLPLAQGIK KQYMRRSTCTINYSKDLPLAQGIKFQ____ TINYSKDLPLAQGIKFQ_____________ K D L I K F 1 0 0 1 0 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 953.55458 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49 P49419 529 537 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.006443 54.549 By MS/MS By matching 1 1 0.93821 0.83983 32.156 2 Median 0.71438 0.66902 NaN 1 0 Median 1.2322 1.0542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10075000 5759100 4316400 7339200 4524800 2814400 2736200 1234300 1502000 0 0 0 0 0 0 0 0 0 0 0 0 4812 318 5005 24564;24565 24816;24817 24816 2 DLPLLLFR GLNGAVFRPEVPLRRDLPLLLFRTQTSDPA PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL R D L F R T 0 1 0 1 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 0 985.59605 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2 A0A286YF22 455 462 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.017646 48.504 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 0.99634 0.88834 75.578 7 Median 0.87717 0.86328 1.4636 2 0 Median 1.085 0.96645 11.919 2 0 Median 1.1107 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8603 1.9474 NaN 1 0 Median 0.19436 0.16674 NaN 1 0 Median 22336000 11312000 11024000 21191000 10797000 10394000 500760 213150 287610 214870 95572 119290 0 0 0 309270 109620 199650 119910 96453 23459 4813 351 5006 24566;24567;24568;24569;24570;24571;24572 24818;24819;24820;24821 24819 4 DLPNALDEK PQLQGIPVLVLGNKRDLPNALDEKQLIEKM VLGNKRDLPNALDEKQLIEKMNLSAIQDRE R D L E K Q 1 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1013.5029 Q9NVJ2 Q9NVJ2 133 141 ARL8B ADP-ribosylation factor-like protein 8B yes yes 2 0.0054564 88.948 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4814 4134 5007 24573 24822 24822 1 DLPNIEVR ARMRHIPLAPGSDWRDLPNIEVRLSDGTMA APGSDWRDLPNIEVRLSDGTMARKLRYTHH R D L V R L 0 1 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 8 0 954.51345 P26358;K7ENW7 P26358 1438 1445 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0035928 86.794 By MS/MS By MS/MS 3 5 0.83123 0.80941 11.932 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80451 0.87695 12.338 3 0 Median 0.91809 0.80908 12.804 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48828000 26270000 22558000 0 0 0 0 0 0 38800000 21112000 17688000 10028000 5158600 4869600 0 0 0 0 0 0 4815 2142 5008 24574;24575;24576;24577;24578;24579;24580;24581 24823;24824;24825;24826;24827;24828;24829 24824 7 DLPPILLVR VSSALYMAWLEALSKDLPPILLVRGNHQSV LEALSKDLPPILLVRGNHQSVLTFYS____ K D L V R G 0 1 0 1 0 0 0 0 0 1 3 0 0 0 2 0 0 0 0 1 0 0 9 0 1034.6488 P55011 P55011 1193 1201 SLC12A2 Solute carrier family 12 member 2 yes yes 2 0.020926 38.792 By MS/MS By matching By matching 3 3 1 0.75231 0.71291 12.314 7 Median 0.71563 0.71291 4.5875 3 0 Median 0.93332 0.78388 9.823 3 0 Plateau 0.84994 0.94183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5995100 3404400 2590800 1811700 1046800 764870 3985100 2245300 1739800 198360 112280 86082 0 0 0 0 0 0 0 0 0 4816 2490 5009 24582;24583;24584;24585;24586;24587;24588 24830 24830 1 DLPPVSGSIIWAK VQYPQSQACKMSHVRDLPPVSGSIIWAKQI VRDLPPVSGSIIWAKQIDRQLTAYMKRVED R D L A K Q 1 0 0 1 0 0 0 1 0 2 1 1 0 0 2 2 0 1 0 1 0 0 13 0 1381.7606 Q14204 Q14204 640 652 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00049996 79.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.85098 0.81957 3.7877 4 Median 0.793 0.79574 NaN 1 1 Median 0.96433 0.84412 NaN 1 0 Median 0.745 0.79544 NaN 1 0 Median 0.91319 0.85408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49795000 28502000 21293000 25172000 15370000 9801300 6340900 3167600 3173300 17504000 9579700 7924600 778390 384480 393910 0 0 0 0 0 0 4817 2865 5010 24589;24590;24591;24592;24593 24831;24832;24833;24834;24835;24836;24837;24838;24839;24840;24841 24834 11 DLPRPSEVNETILRPLNVEPPLTDLQK ERVKEMKRMHKAVQKDLPRPSEVNETILRP LRPLNVEPPLTDLQKSEELIKKEMITMLHY K D L Q K S 0 2 2 2 0 1 3 0 0 1 5 1 0 0 5 1 2 0 0 2 0 0 27 2 3082.6663 Q99459 Q99459 544 570 CDC5L Cell division cycle 5-like protein yes yes 3 0.025963 30.958 By MS/MS 1 0.34762 0.40901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34762 0.40901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12275000 10282000 1993100 0 0 0 0 0 0 12275000 10282000 1993100 0 0 0 0 0 0 0 0 0 4818 3745 5011 24594 24842 24842 1 DLPSADSVQYR HFFHSLMLYHEHLRKDLPSADSVQYRHLPS HLRKDLPSADSVQYRHLPSRGITQKEQDGL K D L Y R H 1 1 0 2 0 1 0 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 11 0 1249.5939 Q92621 Q92621 572 582 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00018909 108.98 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 0.82874 0.83621 27.315 6 Median NaN NaN NaN 0 0 Median 1.0328 0.87056 NaN 1 0 Median 0.77579 0.83882 21.777 2 0 Median 1.1292 0.99506 NaN 1 0 Median 0.76518 0.80321 NaN 1 0 Median 0.58543 0.47641 NaN 1 0 Median 69559000 36900000 32658000 0 0 0 2165700 1105300 1060300 55701000 29538000 26163000 6730400 3106500 3623900 3939800 2491000 1448800 1021900 659280 362640 4819 3547 5012 24595;24596;24597;24598;24599;24600 24843;24844;24845;24846;24847;24848 24844 6 DLPSWMK RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN GEEDSVPRDLPSWMKFLHGKLGNPIVPLNI R D L M K F 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 7 0 875.42112 P78527 P78527 2121 2127 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.025032 54.787 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 2 1 1 1.0829 1.0312 16.882 8 Median 0.90784 0.88447 6.1306 2 0 Median 1.3246 1.1548 NaN 1 0 Median 0.83093 0.88573 NaN 1 0 Median 1.2945 1.201 5.9857 2 0 Median 0.77454 0.81852 NaN 1 0 Median 1.3323 1.1531 NaN 1 0 Median 49795000 26006000 23789000 13050000 6631700 6418100 3148200 1271100 1877100 29516000 16024000 13492000 1411800 584060 827790 2425200 1387500 1037700 244460 108420 136040 4820 2647 5013 24601;24602;24603;24604;24605;24606;24607;24608 24849;24850;24851;24852;24853;24854;24855 24853 7 DLQAGLAR PLFLPPTTVPPECYRDLQAGLARILGSKLS VPPECYRDLQAGLARILGSKLSSWQRNPAL R D L A R I 2 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 842.46102 Q9UBB6 Q9UBB6 260 267 NCDN Neurochondrin yes yes 2 0.019911 67.035 By MS/MS 1 0.5284 0.45793 NaN 1 Median NaN NaN NaN 0 0 Median 0.5284 0.45793 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4356000 2508700 1847300 0 0 0 4356000 2508700 1847300 0 0 0 0 0 0 0 0 0 0 0 0 4821 4234 5014 24609 24856 24856 1 DLQANVEHLVQK GADAAYIFEEPFTIRDLQANVEHLVQKMKT TIRDLQANVEHLVQKMKTTVKRGLVLRNEK R D L Q K M 1 0 1 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1392.7361 A0A2R8Y891;P08237 A0A2R8Y891 707 718 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 5.9215E-05 94.465 By MS/MS By matching By matching 1 1 1 1.1484 1.0032 59.764 3 Median 1.0102 0.91864 NaN 1 0 Median 1.1484 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.2241 2.6953 NaN 1 0 Median 18491000 9048800 9442100 10650000 5329100 5320600 7472800 3643600 3829300 0 0 0 0 0 0 0 0 0 368360 76133 292230 4822 390 5015 24610;24611;24612 24857;24858 24858 2 DLQDELAGNSEQR QEQIKQRTKLELKAKDLQDELAGNSEQRKR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K D L Q R K 1 1 1 2 0 2 2 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1473.6696 Q9UQE7 Q9UQE7 311 323 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.9663E-09 129.89 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.93931 0.96466 10.398 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8418 0.92557 NaN 1 1 Median 1.2733 1.0836 NaN 1 0 Median 0.85905 0.89341 10.851 2 1 Median 1.2548 1.0316 NaN 1 0 Median 31893000 16326000 15567000 0 0 0 0 0 0 13082000 6392800 6689300 2605900 1199300 1406600 15654000 8515100 7139300 550550 218530 332020 4823 4362 5016 24613;24614;24615;24616;24617 24859;24860;24861;24862 24860 4 DLQEEVSNLYNNIR STTSASGTGRKRTIKDLQEEVSNLYNNIRL KDLQEEVSNLYNNIRLFEKGMKFFADDTQA K D L I R L 0 1 3 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 1 1 0 0 14 0 1705.8271 O94874 O94874 539 552 UFL1 E3 UFM1-protein ligase 1 yes yes 2 4.28E-07 116.77 By matching By MS/MS By matching 1 1 1 1.1348 0.98054 18.737 3 Plateau 1.0866 1.0863 NaN 1 0 Median 1.1348 0.98054 NaN 1 0 Median 0.7248 0.75532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7980100 3492500 4487600 483810 196850 286950 7154200 3077600 4076500 342100 217990 124110 0 0 0 0 0 0 0 0 0 4824 1732 5017 24618;24619;24620 24863 24863 1 DLQEFVPFGR MSNFYEERTTMIAARDLQEFVPFGRDHCKH MIAARDLQEFVPFGRDHCKHHPNALNLQLR R D L G R D 0 1 0 1 0 1 1 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1206.6033 Q9H1A4;F8WAS1 Q9H1A4 16 25 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.0048213 51.854 By MS/MS By matching 2 2 0.92695 0.84077 11.119 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81655 0.90893 17.014 2 0 Median 0.96361 0.84077 4.5437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5512600 2984000 2528600 0 0 0 0 0 0 4858100 2672000 2186200 654490 312080 342400 0 0 0 0 0 0 4825 3933 5018 24621;24622;24623;24624 24864;24865;24866 24865 3 DLQEVIELTK LSGNGENEDLLKLKKDLQEVIELTKDLLST LKLKKDLQEVIELTKDLLSTQPSETLASSD K D L T K D 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1186.6445 O75940 O75940 38 47 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 2 0.0075902 47.603 By matching By MS/MS By matching By MS/MS 2 1 1 2 1.1249 1.0163 16.36 6 Median NaN NaN NaN 0 0 Median 1.0854 0.9222 17.523 2 0 Median 1.0302 0.98948 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2382 1.2665 NaN 1 0 Median 1.1293 0.93687 16.216 2 0 Median 15442000 7348700 8093300 0 0 0 2202100 1068000 1134000 6647400 3191500 3455900 0 0 0 1688800 764220 924580 4903700 2324900 2578800 4826 1710 5019 24625;24626;24627;24628;24629;24630 24867;24868;24869 24867 3 DLQGLTVEHAIDSFR EEEFGQRRQDLYSARDLQGLTVEHAIDSFR DLQGLTVEHAIDSFREGETMILTLKDKGVL R D L F R E 1 1 0 2 0 1 1 1 1 1 2 0 0 1 0 1 1 0 0 1 0 0 15 0 1699.8529 O43290 O43290 253 267 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2;3 1.2603E-07 98.353 By matching By matching By MS/MS By matching By MS/MS 1 1 3 2 1 1.0602 1.0239 15.265 8 Median 1.1868 1.1985 NaN 1 0 Median 1.1346 1.0378 NaN 1 0 Median 0.8665 0.89308 19.072 3 1 Median 1.2284 1.0417 4.3481 2 0 Median 0.88453 0.94427 NaN 1 0 Median NaN NaN NaN 0 0 Median 14536000 7120500 7415800 552270 211460 340810 602010 257110 344910 11493000 5809300 5683900 477130 208750 268380 1411700 633930 777780 0 0 0 4827 1563 5020 24631;24632;24633;24634;24635;24636;24637;24638 24870;24871;24872;24873 24872 4 DLQGRDEQSEEK RLEVNLQAMKAQFERDLQGRDEQSEEKKKQ FERDLQGRDEQSEEKKKQLVRQVREMEAEL R D L E K K 0 1 0 2 0 2 3 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1432.643 P35579 P35579 1572 1583 MYH9 Myosin-9 yes yes 2;3 0.014859 46.891 By MS/MS By MS/MS By matching By matching By matching 2 2 2 3 1 1.0468 1.0895 11.278 10 Median NaN NaN NaN 0 0 Median 1.0329 0.98953 2.8664 2 0 Median 0.92477 1.1003 3.1181 2 0 Median 1.0883 1.0506 6.8654 2 0 Median 1.086 1.2252 11.068 3 0 Median 1.1666 1.0363 NaN 1 0 Median 7512000 3745400 3766600 0 0 0 1644400 818820 825620 4075400 2110900 1964600 215490 118820 96673 1454600 635940 818670 122050 60977 61074 4828 2244 5021 24639;24640;24641;24642;24643;24644;24645;24646;24647;24648 24874;24875;24876;24877 24877 4 DLQHPNEFIR RLLHEMILVCDAYRKDLQHPNEFIRGSTLR DAYRKDLQHPNEFIRGSTLRFLCKLKEAEL K D L I R G 0 1 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1267.6309 P53618;E9PP73;E9PP63;E9PKQ1 P53618 108 117 COPB1 Coatomer subunit beta yes no 2;3 6.159E-05 126.07 By MS/MS By MS/MS By matching 3 2 1 0.93367 0.87072 33.187 6 Median 0.95819 0.9261 7.2888 3 2 Median 1.0242 0.88721 17.072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37401 0.40637 NaN 1 0 Median 45037000 25619000 19418000 31148000 17196000 13952000 12361000 7480200 4881000 0 0 0 0 0 0 0 0 0 1527300 943090 584200 4829 2472 5022 24649;24650;24651;24652;24653;24654 24878;24879;24880;24881;24882;24883 24881 6 DLQLQCEANVR NERMAQHQKHENQMRDLQLQCEANVRELHQ NQMRDLQLQCEANVRELHQLQNEKCHLLVE R D L V R E 1 1 1 1 1 2 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1344.6456 Q9H2G2 Q9H2G2 1133 1143 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.00019108 76.143 By MS/MS 1 1.0763 0.90683 NaN 1 Median NaN NaN NaN 0 0 Median 1.0763 0.90683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2109300 1107400 1002000 0 0 0 2109300 1107400 1002000 0 0 0 0 0 0 0 0 0 0 0 0 4830 3942 5023 24655 24884;24885 24885 2 DLQLQILR SSQFVSKGDLQTMLRDLQLQILRNVTHHVS DLQTMLRDLQLQILRNVTHHVSVTKQLPTS R D L L R N 0 1 0 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 997.59203 H0Y6N5;H0Y742;E9PHI4;O94901;H7C2K3 H0Y6N5 402 409 SUN1 SUN domain-containing protein 1 yes no 2 0.059563 48.504 By MS/MS 1 0.92355 0.97748 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92355 0.97748 NaN 1 1 Median NaN NaN NaN 0 0 Median 2933200 1581800 1351400 0 0 0 0 0 0 0 0 0 0 0 0 2933200 1581800 1351400 0 0 0 4831 932 5024 24656 24886 24886 1 DLQLVLPDYFPER DRDGFLFRYILDYLRDLQLVLPDYFPERSR LRDLQLVLPDYFPERSRLQREAEYFELPEL R D L E R S 0 1 0 2 0 1 1 0 0 0 3 0 0 1 2 0 0 0 1 1 0 0 13 0 1603.8246 Q96CX2 Q96CX2 98 110 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 2 0.00046659 72.79 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0504 0.98616 37.757 4 Median 0.77301 0.79005 NaN 1 0 Median 1.4273 1.2309 NaN 1 0 Median 0.61549 0.60578 NaN 1 0 Median 1.5744 1.3515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7598800 3698000 3900900 435390 225310 210080 356310 142790 213520 2866500 1747000 1119500 3940600 1582900 2357700 0 0 0 0 0 0 4832 3623 5025 24657;24658;24659;24660 24887;24888;24889 24887 3 DLQMVNISLR IRARPRKISSPTGSKDLQMVNISLRVLSRP PTGSKDLQMVNISLRVLSRPNAQELPSMYQ K D L L R V 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1187.6332 J3KPX7;Q99623;F5GY37;F5GWA7 J3KPX7 98 107 PHB2 Prohibitin-2 yes no 2 0.00033784 117.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 5 1.2983 1.0716 22.822 11 Median 1.0128 0.94584 1.1886 2 0 Median 1.557 1.2946 5.518 2 0 Median 1.0086 0.99826 NaN 1 0 Median 1.5036 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2983 1.0716 30.178 5 0 Median 203620000 92641000 110980000 110300000 54892000 55411000 78729000 31332000 47397000 5773600 2830000 2943600 816050 333370 482680 0 0 0 7999000 3253600 4745400 4833 1313 5026;5027 24661;24662;24663;24664;24665;24666;24667;24668;24669;24670;24671 24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903 24894 434 14 DLQNVNITLR CRSRPRNVPVITGSKDLQNVNITLRILFRP ITGSKDLQNVNITLRILFRPVASQLPRIFT K D L L R I 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2;D6RBK0 P35232 84 93 PHB Prohibitin yes no 2 2.4905E-15 183.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 1 1 1.4357 1.2279 18.974 12 Median 1.0059 0.94629 0.80167 2 1 Median 1.4661 1.2334 18.402 4 1 Median 1.1683 1.1322 11.606 2 0 Median 1.6603 1.3816 2.1008 2 0 Median 1.5976 1.6119 NaN 1 0 Median 1.4069 1.1289 NaN 1 0 Median 400290000 175480000 224810000 232930000 107650000 125280000 98903000 39044000 59859000 30099000 13977000 16121000 3263600 1230600 2032900 22289000 8248700 14040000 12802000 5329600 7472900 4834 2233 5028 24672;24673;24674;24675;24676;24677;24678;24679;24680;24681;24682;24683 24904;24905;24906;24907;24908;24909;24910;24911;24912;24913;24914;24915;24916;24917;24918;24919 24916 16 DLQPFPTCQALVYR NVDPEDLIPKLPRPRDLQPFPTCQALVYRG RDLQPFPTCQALVYRGHSDLVRCLSVSPGG R D L Y R G 1 1 0 1 1 2 0 0 0 0 2 0 0 1 2 0 1 0 1 1 0 0 14 0 1706.845 Q14137 Q14137 397 410 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.010821 47.261 By MS/MS 1 0.68502 0.72646 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68502 0.72646 NaN 1 1 Median NaN NaN NaN 0 0 Median 2473100 1517900 955180 0 0 0 0 0 0 0 0 0 0 0 0 2473100 1517900 955180 0 0 0 4835 2856 5029 24684 24920 24920 1 DLQQLFK LDRISTEELPKMESKDLQQLFKDVLGSERE ELPKMESKDLQQLFKDVLGSEREQHLGCGT K D L F K D 0 0 0 1 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 890.48617 O14686 O14686 1890 1896 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.023112 57.102 By MS/MS By matching 2 1 0.9598 1.0487 10.179 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94656 1.0244 3.3214 2 0 Median 1.3208 1.2161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8262600 4314800 3947800 0 0 0 0 0 0 7839200 4146900 3692300 423400 167870 255530 0 0 0 0 0 0 4836 1490 5030 24685;24686;24687 24921;24922 24921 2 DLQQQLVDAK YELREEHIDKVFKHKDLQQQLVDAKLQQAQ VFKHKDLQQQLVDAKLQQAQEMLKEAEERH K D L A K L 1 0 0 2 0 3 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1156.6088 P40222 P40222 331 340 TXLNA Alpha-taxilin yes yes 2 0.014003 39.305 By MS/MS 2 1.1565 0.99002 36.707 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1565 0.99002 36.707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4434000 2010900 2423100 0 0 0 0 0 0 0 0 0 4434000 2010900 2423100 0 0 0 0 0 0 4837 2284 5031 24688;24689 24923;24924 24923 2 DLQQSIAR DIVFARKTERDELLKDLQQSIAREPSAPSI ERDELLKDLQQSIAREPSAPSIPTPAYQSS K D L A R E 1 1 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 929.49304 Q8WUM4 Q8WUM4 708 715 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0034335 96.492 By MS/MS 2 1.0691 0.92041 13.357 2 Median NaN NaN NaN 0 0 Median 1.0691 0.92041 13.357 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6316000 2980400 3335600 0 0 0 6316000 2980400 3335600 0 0 0 0 0 0 0 0 0 0 0 0 4838 3493 5032 24690;24691 24925 24925 1 DLQQYQSQAK LPLAASMQEDEQSGRDLQQYQSQAKQLFRK EQSGRDLQQYQSQAKQLFRKLNEQSPTRCT R D L A K Q 1 0 0 1 0 4 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1207.5833 O75396 O75396 29 38 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.00068446 110.87 By MS/MS By MS/MS 1 1 0.92848 0.83061 12.334 2 Median 0.96791 0.9063 NaN 1 0 Median 0.89066 0.76124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4532500 2348900 2183600 3576400 1848600 1727800 956030 500290 455740 0 0 0 0 0 0 0 0 0 0 0 0 4839 1669 5033 24692;24693 24926;24927;24928 24927 3 DLQSNVEHLTEK GADAAYIFEEPFDIRDLQSNVEHLTEKMKT DIRDLQSNVEHLTEKMKTTIQRGLVLRNES R D L E K M 0 0 1 1 0 1 2 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1411.6943 Q01813;B1APP6 Q01813 614 625 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 8.5124E-05 126.67 By MS/MS By MS/MS 3 3 1.0537 0.92883 11.401 6 Median 1.0597 0.94225 8.7826 3 0 Median 1.0479 0.9156 14.339 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53606000 26168000 27438000 42362000 20626000 21736000 11244000 5541900 5702200 0 0 0 0 0 0 0 0 0 0 0 0 4840 2692 5034 24694;24695;24696;24697;24698;24699 24929;24930;24931;24932;24933;24934 24929 6 DLQSSASSVSLPSVK SILDMSLHRQMGSDRDLQSSASSVSLPSVK DLQSSASSVSLPSVKKAPKKRRISIGSLFR R D L V K K 1 0 0 1 0 1 0 0 0 0 2 1 0 0 1 6 0 0 0 2 0 0 15 0 1503.7781 Q9NV58;A0A0C4DGD6;A3KCU8;E7EQ63;E7EQV8;E7ETB2 Q9NV58 43 57 RNF19A;RNF19 E3 ubiquitin-protein ligase RNF19A yes no 2 0.03347 39.917 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4841 4124 5035 24700 24935 24935 1 DLQTRDEQNEEK RLEVNMQAMKAQFERDLQTRDEQNEEKKRL FERDLQTRDEQNEEKKRLLIKQVRELEAEL R D L E K K 0 1 1 2 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 12 1 1503.6801 P35580 P35580 1579 1590 MYH10 Myosin-10 yes yes 3 0.045978 18.136 By MS/MS 1 0.74778 0.88792 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74778 0.88792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1028000 555950 472000 0 0 0 0 0 0 1028000 555950 472000 0 0 0 0 0 0 0 0 0 4842 2245 5036 24701 24936 24936 1 DLQWIQVSDSK MLRLSQDVKGYSFIKDLQWIQVSDSKEAYR SFIKDLQWIQVSDSKEAYRLLKLGIKHQSV K D L S K E 0 0 0 2 0 2 0 0 0 1 1 1 0 0 0 2 0 1 0 1 0 0 11 0 1317.6565 Q96Q89 Q96Q89 314 324 KIF20B Kinesin-like protein KIF20B yes yes 2 0.028657 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4843 3717 5037 24702 24937 24937 1 DLREVFSK CCLGVFGLSLYTTERDLREVFSKYGPIADV SLYTTERDLREVFSKYGPIADVSIVYDQQS R D L S K Y 0 1 0 1 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 1 992.5291 P62995 P62995 133 140 TRA2B Transformer-2 protein homolog beta yes yes 2 0.020419 82.279 By matching By MS/MS By matching 1 3 1 1.0969 1.2328 23.331 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0549 0.92448 NaN 1 0 Median 1.0969 1.2328 6.215 3 0 Median 2.0251 1.7569 NaN 1 0 Median 67671000 33190000 34481000 0 0 0 0 0 0 0 0 0 1557300 723840 833490 60513000 30502000 30011000 5600300 1963800 3636500 4844 2614 5038 24703;24704;24705;24706;24707 24938 24938 1 DLREVFSR TCLGVFGLSLYTTERDLREVFSRYGPLSGV SLYTTERDLREVFSRYGPLSGVNVVYDQRT R D L S R Y 0 2 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 1 1020.5352 Q13595 Q13595 134 141 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.01191 107.69 By MS/MS 1 0.98081 1.0469 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98081 1.0469 NaN 1 0 Median NaN NaN NaN 0 0 Median 16005000 8437700 7567200 0 0 0 0 0 0 0 0 0 0 0 0 16005000 8437700 7567200 0 0 0 4845 2828 5039 24708 24939 24939 1 DLREYTQATIYVHK LCPECREGLLCQQQRDLREYTQATIYVHKV RDLREYTQATIYVHKVVDNKKVMKDSAPEL R D L H K V 1 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 2 0 2 1 0 0 14 1 1735.8893 Q86UV5;A0A0A0MRS6 Q86UV5 855 868 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 3 0.00030775 53.995 By matching By MS/MS 1 2 0.95184 1.0788 30.077 3 Plateau NaN NaN NaN 0 0 Median 0.64562 0.60202 NaN 1 0 Median 0.88153 0.99368 11.621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14607000 7707900 6899200 0 0 0 1011800 623270 388500 13595000 7084600 6510700 0 0 0 0 0 0 0 0 0 4846 3281 5040 24709;24710;24711 24940 24940 1 DLRPVDNR HLLSAISSVRLYIPKDLRPVDNRQSVLKSI VRLYIPKDLRPVDNRQSVLKSIQEVQKRFP K D L N R Q 0 2 1 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 8 1 983.51484 P42285 P42285 749 756 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.041787 61.999 By MS/MS By matching 1 1 0.85886 0.93001 16.855 2 Median NaN NaN NaN 0 0 Median 0.85627 0.82551 NaN 1 0 Median 0.86147 1.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2845500 1440800 1404700 0 0 0 2253500 1188800 1064700 592000 252000 340000 0 0 0 0 0 0 0 0 0 4847 2309 5041 24712;24713 24941 24941 1 DLSAAGIGLLAAATQSLSMPASLGR FQQSSLSRDSQGHGRDLSAAGIGLLAAATQ AAATQSLSMPASLGRMNQGTARLASLMNLG R D L G R M 6 1 0 1 0 1 0 3 0 1 5 0 1 0 1 4 1 0 0 0 0 0 25 0 2370.2577 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;D6R8Z5;D6REK4;D6RCM3;A0A1B0GX04;D6RBS2;D6R9F3;D6RB45 P43243 20 44 MATR3 Matrin-3 yes no 2;3 5.239E-05 36.193 By matching By MS/MS 4 2 0.88308 0.92201 8.0714 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8551 0.89559 10.364 4 0 Median NaN NaN NaN 0 0 Median 0.88308 0.92201 1.6402 2 0 Median NaN NaN NaN 0 0 Median 11573000 5996400 5576400 0 0 0 0 0 0 871430 449630 421800 0 0 0 10701000 5546800 5154600 0 0 0 4848 297 5042 24714;24715;24716;24717;24718;24719 24942;24943;24944;24945 24944 4 DLSAENGLESLMLR DASDPTTKEFETLIKDLSAENGLESLMLRS KDLSAENGLESLMLRSSSNLALALYRYHSY K D L L R S 1 1 1 1 0 0 2 1 0 0 4 0 1 0 0 2 0 0 0 0 0 0 14 0 1546.7661 O75976 O75976 908 921 CPD Carboxypeptidase D no no 2 0.00083685 58.676 By MS/MS By matching 1 1 0.84396 0.76131 19.982 2 Median 0.68832 0.661 NaN 1 0 Median 1.0348 0.87685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7435200 4024800 3410400 4525300 2705100 1820200 2909900 1319700 1590200 0 0 0 0 0 0 0 0 0 0 0 0 4849 1714 5043 24720;24721 24946 24946 1 DLSDGIHVVK RISEVLQKLQNEILKDLSDGIHVVKDARER NEILKDLSDGIHVVKDARERDFTSLENTVE K D L V K D 0 0 0 2 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1081.5768 Q07065 Q07065 214 223 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00033834 85.666 By MS/MS By MS/MS By matching 2 1 1 1.2826 1.1332 44.142 4 Median 0.82278 0.79608 28.373 2 0 Median 1.5788 1.3199 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1395 1.8357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40290000 17952000 22338000 23007000 11439000 11568000 16181000 6151100 10030000 0 0 0 1102400 361830 740540 0 0 0 0 0 0 4850 2730 5044 24722;24723;24724;24725 24947;24948;24949;24950 24947 4 DLSELGSVR RAQFEQLKDGKTTVKDLSELGSVRTLLQGS GKTTVKDLSELGSVRTLLQGSGCLAGIYLE K D L V R T 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 9 0 974.50327 Q15149;H0YDN1 Q15149 3477 3485 PLEC Plectin yes no 2 0.0016231 79.474 By matching By MS/MS By MS/MS 1 1 3 1.2038 1.1204 47.362 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1557 1.0057 NaN 1 0 Median 1.2038 1.2587 NaN 1 0 Median 1.3628 1.1204 60.762 3 0 Median 9216700 4578800 4637900 0 0 0 0 0 0 0 0 0 1115300 516200 599080 4944600 2489200 2455300 3156800 1573300 1583500 4851 2933 5045 24726;24727;24728;24729;24730 24951;24952 24951 2 DLSEVSETTESTDVK EEKGLAAEDSGGDSKDLSEVSETTESTDVK DLSEVSETTESTDVKDSSEASDSAS_____ K D L V K D 0 0 0 2 0 0 3 0 0 0 1 1 0 0 0 3 3 0 0 2 0 0 15 0 1638.7472 P41227 P41227 211 225 NAA10 N-alpha-acetyltransferase 10 yes yes 2 9.3047E-10 110.66 By MS/MS 2 0.7863 0.75206 13.04 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7863 0.75206 13.04 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6833700 3652500 3181200 0 0 0 0 0 0 6833700 3652500 3181200 0 0 0 0 0 0 0 0 0 4852 2298 5046 24731;24732 24953;24954 24954 2 DLSFFGGLLR WSPSPAQASGAAALRDLSFFGGLLRRAACL AAALRDLSFFGGLLRRAACLRRCLGPPAAH R D L L R R 0 1 0 1 0 0 0 2 0 0 3 0 0 2 0 1 0 0 0 0 0 0 10 0 1123.6026 Q32P28;E2QRI1 Q32P28 106 115 LEPRE1;P3H1 Prolyl 3-hydroxylase 1 yes no 2 0.034259 32.841 By matching By matching By matching By matching By MS/MS 1 2 1 1 2 1.1313 1.1602 22.78 7 Median 1.116 1.1053 NaN 1 0 Median 1.5382 1.3513 32.839 2 0 Median 1.1313 1.214 NaN 1 0 Median 1.3896 1.1602 NaN 1 0 Median 0.92425 0.95563 28.005 2 0 Median NaN NaN NaN 0 0 Median 9321200 4252400 5068800 1742000 816670 925380 2919600 1265000 1654600 3464700 1623100 1841600 220720 86256 134460 974140 461390 512740 0 0 0 4853 3007 5047 24733;24734;24735;24736;24737;24738;24739 24955 24955 1 DLSGMFTTESR PLHHQSKVITLCLYRDLSGMFTTESRLGGA CLYRDLSGMFTTESRLGGARDELGGRSGPE R D L S R L 0 1 0 1 0 0 1 1 0 0 1 0 1 1 0 2 2 0 0 0 0 0 11 0 1242.5551 Q10570 Q10570 703 713 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0001134 121.73 By MS/MS By MS/MS 3 3 1.2019 1.2022 8.4876 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0937 1.2101 9.7138 3 0 Median 1.3771 1.1944 8.0826 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28413000 13781000 14632000 0 0 0 0 0 0 27532000 13421000 14111000 881150 360660 520490 0 0 0 0 0 0 4854 2753 5048 24740;24741;24742;24743;24744;24745 24956;24957;24958;24959;24960 24956 5 DLSHIGDAVVISCAK CVVKMPSGEFARICRDLSHIGDAVVISCAK DLSHIGDAVVISCAKDGVKFSASGELGNGN R D L A K D 2 0 0 2 1 0 0 1 1 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1583.7977 P12004 P12004 150 164 PCNA Proliferating cell nuclear antigen yes yes 2;3 8.8537E-05 69.672 By MS/MS By MS/MS By MS/MS 1 3 2 1.0949 0.98879 8.6795 6 Median 0.9647 0.89092 NaN 1 0 Median 1.2323 1.0324 3.3739 3 0 Plateau 0.95606 0.91592 13.146 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63957000 29712000 34245000 11373000 5493000 5880500 43556000 19788000 23768000 9026600 4430400 4596200 0 0 0 0 0 0 0 0 0 4855 1974 5049 24746;24747;24748;24749;24750;24751 24961;24962;24963;24964;24965;24966 24963 6 DLSHILGIPQSWR HLLTSDASSPDEFHRDLSHILGIPQSWRLY HRDLSHILGIPQSWRLYLVNLCQRCMDTRT R D L W R L 0 1 0 1 0 1 0 1 1 2 2 0 0 0 1 2 0 1 0 0 0 0 13 0 1520.81 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 710 722 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.027891 20.663 By MS/MS 1 0.64788 0.64497 NaN 1 Median 0.64788 0.64497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 828170 533350 294820 828170 533350 294820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4856 189 5050 24752 24967 24967 1 DLSIGNPIPTVVSGAR IPNSTIAGINEDTTKDLSIGNPIPTVVSGA LSIGNPIPTVVSGARGNAESGDSVKMYGSA K D L A R G 1 1 1 1 0 0 0 2 0 2 1 0 0 0 2 2 1 0 0 2 0 0 16 0 1594.8679 O95104 O95104 778 793 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 2 7.7485E-05 75.695 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.75947 0.80196 3.7709 4 Linear 0.76596 0.76828 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72703 0.79953 NaN 1 0 Median 0.8382 0.73363 NaN 1 0 Median 0.75304 0.78791 NaN 1 0 Median NaN NaN NaN 0 0 Median 14688000 8197600 6490100 1108800 513280 595530 0 0 0 8457600 4757100 3700500 369110 184720 184380 4752300 2742500 2009700 0 0 0 4857 1745 5051 24753;24754;24755;24756 24968;24969;24970;24971 24968 4 DLSKPIGALNPK YESEELDLTLPTNFRDLSKPIGALNPKRAA NFRDLSKPIGALNPKRAAFFAERYESWEDD R D L P K R 1 0 1 1 0 0 0 1 0 1 2 2 0 0 2 1 0 0 0 0 0 0 12 1 1251.7187 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A3B3IU76;A0A3B3IS13;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 E9PEM5 2257 2268 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 3 0.013645 42.809 By MS/MS 1 1.0368 0.98683 NaN 1 Median NaN NaN NaN 0 0 Median 1.0368 0.98683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3620800 1663300 1957500 0 0 0 3620800 1663300 1957500 0 0 0 0 0 0 0 0 0 0 0 0 4858 470 5052 24757 24972 24972 1 DLSLDDFK APYFKGTAVVNGEFKDLSLDDFKGKYLVLF VVNGEFKDLSLDDFKGKYLVLFFYPLDFTF K D L F K G 0 0 0 3 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 8 0 951.45493 P30048 P30048 84 91 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.031031 38.792 By matching By matching By MS/MS By matching 1 2 1 1 1.3732 1.1932 20.842 5 Median 0.96549 0.89656 NaN 1 0 Median 1.3975 1.2044 1.3204 2 0 Median 1.0352 0.99728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8054 1.5446 NaN 1 0 Median 9206300 4541600 4664700 5380600 2802100 2578500 1928900 766280 1162600 1820600 950030 870590 0 0 0 0 0 0 76186 23171 53015 4859 2183 5053 24758;24759;24760;24761;24762 24973;24974 24973 2 DLSLDDFKGK APYFKGTAVVNGEFKDLSLDDFKGKYLVLF NGEFKDLSLDDFKGKYLVLFFYPLDFTFVC K D L G K Y 0 0 0 3 0 0 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 0 10 1 1136.5714 P30048 P30048 84 93 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.010678 60.91 By MS/MS By MS/MS 1 1 1.247 1.2006 2.0934 2 Median 1.1997 1.2185 NaN 1 0 Median 1.2961 1.183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30606000 10765000 19840000 20159000 6659300 13499000 10447000 4106200 6341000 0 0 0 0 0 0 0 0 0 0 0 0 4860 2183 5054 24763;24764 24975;24976;24977 24977 3 DLSLEEIQK KESVPEFPLSPPKKKDLSLEEIQKKLEAAE SPPKKKDLSLEEIQKKLEAAEERRKSHEAE K D L Q K K 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1073.5605 A2A2D0;P16949;E5RGX5;Q93045 A2A2D0 44 52 STMN1;STMN2 Stathmin;Stathmin-2 no no 2 0.00060254 110.31 By MS/MS By MS/MS By MS/MS 1 1 1 0.96217 0.85751 13.6 2 Median 0.83485 0.77888 NaN 1 0 Median 1.1089 0.94407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 347430000 172780000 174650000 290950000 146290000 144650000 56483000 26486000 29997000 0 0 0 0 0 0 0 0 0 0 0 0 4861 496;843 5055 24765;24766;24767 24978;24979;24980;24981;24982 24981 5 DLSLEEIQKK KESVPEFPLSPPKKKDLSLEEIQKKLEAAE PPKKKDLSLEEIQKKLEAAEERRKSHEAEV K D L K K L 0 0 0 1 0 1 2 0 0 1 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1201.6554 A2A2D0;P16949;E5RGX5;Q93045 A2A2D0 44 53 STMN1;STMN2 Stathmin;Stathmin-2 no no 2;3 0.0005312 87.639 By MS/MS By matching 2 1 0.98416 0.98464 10.964 3 Median 0.95953 0.95778 3.9113 2 0 Median 1.3018 1.151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30537000 13946000 16591000 28282000 13076000 15206000 2255200 869810 1385400 0 0 0 0 0 0 0 0 0 0 0 0 4862 496;843 5056 24768;24769;24770 24983;24984 24983 2 DLSLENGAHAYNR SEEGYLAKVKSLLNKDLSLENGAHAYNREV NKDLSLENGAHAYNREVNGRLENGNQARSE K D L N R E 2 1 2 1 0 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 0 0 13 0 1458.6852 P26358;K7EJL0 P26358 89 101 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 0.00023106 63.727 By MS/MS 1 0.87276 0.95124 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87276 0.95124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16736000 8040600 8695500 0 0 0 0 0 0 16736000 8040600 8695500 0 0 0 0 0 0 0 0 0 4863 2142 5057 24771 24985;24986 24986 2 DLSLLQIQMR RNALKWDKDNLQILRDLSLLQIQMRDLEGY LQILRDLSLLQIQMRDLEGYRETRYQLLQL R D L M R D 0 1 0 1 0 2 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 10 0 1215.6645 A0A0B4J1W3;Q9BXJ9;Q6N069 A0A0B4J1W3 119 128 NAA15;NAA16 N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit yes no 2 0.00012343 123.92 By MS/MS By MS/MS By MS/MS 2 4 1 1.2715 1.1624 68.199 6 Median 1.0787 1.0482 12.455 2 0 Median 1.3656 1.1805 44.34 3 1 Median 5.1116 5.4126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45198000 12641000 32557000 6208400 2674600 3533800 17994000 8131500 9862700 20995000 1834600 19160000 0 0 0 0 0 0 0 0 0 4864 213 5058 24772;24773;24774;24775;24776;24777;24778 24987;24988;24989;24990;24991 24989 5 DLSLLSHGGR IDIIIEMLANVNLSKDLSLLSHGGRVIVVG VNLSKDLSLLSHGGRVIVVGSRGTIEINPR K D L G R V 0 1 0 1 0 0 0 2 1 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 1053.5567 Q08257;A6NP24 Q08257 233 242 CRYZ Quinone oxidoreductase yes no 2 0.00039696 78.149 By matching By MS/MS 1 1 0.89497 0.7901 16.414 2 Median 0.75221 0.70352 NaN 1 0 Median 1.0648 0.88733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15959000 8966100 6993000 10739000 6437600 4301600 5219800 2528400 2691400 0 0 0 0 0 0 0 0 0 0 0 0 4865 2737 5059 24779;24780 24992;24993 24992 2 DLSLPPVDR QYSSAMLESLLPGIRDLSLPPVDRLGLQND LLPGIRDLSLPPVDRLGLQNDLFSLARAGI R D L D R L 0 1 0 2 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 9 0 1010.5397 E9PLK3;P55786;H0YCQ5 E9PLK3 603 611 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.00091113 91.069 By MS/MS 1 0.6411 0.61746 NaN 1 Median 0.6411 0.61746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13766000 8112300 5653800 13766000 8112300 5653800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4866 960 5060 24781 24994;24995 24995 2 DLSMSEEDQMMR YLLTHPPPIMGGVVRDLSMSEEDQMMRAIA VVRDLSMSEEDQMMRAIAMSLGQDIPMDQR R D L M R A 0 1 0 2 0 1 2 0 0 0 1 0 3 0 0 2 0 0 0 0 0 0 12 0 1470.5789 Q7Z6Z7 Q7Z6Z7 1366 1377 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 2.3221E-06 166.19 By MS/MS By MS/MS 2 2 1.1065 1.0075 4.9706 4 Median 1.0524 1.0075 0.2007 2 0 Median 1.2191 1.011 8.6 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46213000 21972000 24240000 37867000 18265000 19602000 8345600 3707300 4638300 0 0 0 0 0 0 0 0 0 0 0 0 4867 3253 5061 24782;24783;24784;24785 24996;24997;24998;24999 24997 4 DLSQLQENLK NSNKSLSGELREVKKDLSQLQENLKISENM REVKKDLSQLQENLKISENMNLQFENQMNK K D L L K I 0 0 1 1 0 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1186.6194 Q8IX12 Q8IX12 1089 1098 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 5.1436E-05 135.83 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.94184 0.97867 93.458 5 Median NaN NaN NaN 0 0 Median 0.11899 0.11788 NaN 1 0 Median 0.91662 0.99329 2.097 2 0 Median 0.94184 0.80888 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1934 0.99392 NaN 1 0 Median 35328000 18434000 16894000 0 0 0 803900 679290 124610 30624000 15774000 14851000 3456600 1744700 1711900 0 0 0 443390 236600 206790 4868 3331 5062 24786;24787;24788;24789;24790 25000;25001;25002 25002 3 DLSSEELAAFQK SIIGSARSLGIRVVKDLSSEELAAFQKERA VVKDLSSEELAAFQKERAIFLAAQKEADLA K D L Q K E 2 0 0 1 0 1 2 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1336.6511 Q9Y3B7 Q9Y3B7 158 169 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.00063206 64.297 By MS/MS 1 1.2156 1.1434 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2156 1.1434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7043900 2826600 4217300 0 0 0 0 0 0 7043900 2826600 4217300 0 0 0 0 0 0 0 0 0 4869 4416 5063 24791 25003 25003 1 DLSSHQLNEFLAQTLQR AKEDDLNSFNATDLKDLSSHQLNEFLAQTL SSHQLNEFLAQTLQRAPLPLGHIKRMQEVY K D L Q R A 1 1 1 1 0 3 1 0 1 0 4 0 0 1 0 2 1 0 0 0 0 0 17 0 1999.0123 P09960 P09960 494 510 LTA4H Leukotriene A-4 hydrolase yes yes 2;3 5.7389E-25 138.39 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1656 1.0564 39.597 6 Median 1.1749 1.1181 4.0547 2 2 Median 1.1432 0.98796 5.5031 2 0 Median 0.42109 0.46427 NaN 1 0 Median 1.734 1.5093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68130000 30209000 37921000 21969000 9063400 12905000 45362000 20727000 24635000 674680 377280 297400 124000 40816 83182 0 0 0 0 0 0 4870 1924 5064 24792;24793;24794;24795;24796;24797 25004;25005;25006;25007;25008;25009 25005 6 DLSSQLLK YPIQRALRLVEAISRDLSSQLLKVLGTRKL LVEAISRDLSSQLLKVLGTRKLMHVAYEEF R D L L K V 0 0 0 1 0 1 0 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 8 0 902.5073 Q14204 Q14204 387 394 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0069954 68.915 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.1519 1.1396 10.376 6 Median 1.0174 0.99499 14.621 2 0 Median 1.331 1.171 NaN 1 0 Median 1.0497 1.12 NaN 1 0 Median 1.2057 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3738 1.1831 NaN 1 0 Median 47566000 22056000 25510000 14535000 6505400 8029800 8569300 3841000 4728300 21894000 10517000 11378000 2047500 960920 1086600 0 0 0 519470 232160 287310 4871 2865 5065 24798;24799;24800;24801;24802;24803 25010;25011;25012;25013;25014;25015 25011 6 DLSSVQTLLTK IGEKENSLKTDDYGRDLSSVQTLLTKQETF DYGRDLSSVQTLLTKQETFDAGLQAFQQEG R D L T K Q 0 0 0 1 0 1 0 0 0 0 3 1 0 0 0 2 2 0 0 1 0 0 11 0 1203.6711 A0A0D9SF54;Q13813 Q13813 2007 2017 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00014645 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 3 1 1.1418 1.1853 24.587 15 Plateau 1.232 1.1872 8.0392 4 2 Median 0.81097 0.7648 60.614 2 0 Median 0.83986 0.91602 31.378 2 0 Median 1.1582 1.0966 4.9887 3 0 Median 1.0558 1.1057 10.779 3 0 Plateau 1.1287 0.96715 NaN 1 0 Median 275850000 127320000 148520000 59254000 25968000 33287000 103920000 44964000 58957000 79581000 40473000 39108000 11098000 5025400 6073000 19635000 9791900 9842800 2357300 1101900 1255400 4872 264;2838 5066 24804;24805;24806;24807;24808;24809;24810;24811;24812;24813;24814;24815;24816;24817;24818 25016;25017;25018;25019;25020;25021;25022;25023;25024;25025;25026;25027;25028;25029 25021 14 DLSTIEPLK CPNLTHLNLSGNKIKDLSTIEPLKKLENLK SGNKIKDLSTIEPLKKLENLKSLDLFNCEV K D L L K K 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 9 0 1014.5597 P39687;H0YN26;O95626;O43423 P39687 102 110 ANP32A;ANP32D;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D;Acidic leucine-rich nuclear phosphoprotein 32 family member C yes no 2 0.0025104 71.501 By MS/MS By MS/MS By matching 1 3 1 0.97224 0.8189 6.2199 5 Median 0.84759 0.76987 NaN 1 0 Median 1.0124 0.85083 6.0392 3 0 Plateau NaN NaN NaN 0 0 Median 1.0286 0.87418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29095000 15402000 13694000 21541000 11664000 9876300 6378700 3176800 3201900 0 0 0 1175900 560480 615390 0 0 0 0 0 0 4873 2282 5067 24819;24820;24821;24822;24823 25030;25031;25032;25033 25031 4 DLSTIEPLKK CPNLTHLNLSGNKIKDLSTIEPLKKLENLK GNKIKDLSTIEPLKKLENLKSLDLFNCEVT K D L K K L 0 0 0 1 0 0 1 0 0 1 2 2 0 0 1 1 1 0 0 0 0 0 10 1 1142.6547 P39687;H0YN26;O95626 P39687 102 111 ANP32A;ANP32D Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member D yes no 2 0.003835 67.897 By MS/MS By MS/MS By matching 1 2 1 1.0903 0.97754 18.634 4 Median 0.82698 0.80141 NaN 1 1 Median 1.256 1.1407 4.4825 2 0 Median NaN NaN NaN 0 0 Median 0.98473 0.86467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29831000 15754000 14077000 22931000 12568000 10363000 4970500 2271900 2698600 0 0 0 1930200 914890 1015300 0 0 0 0 0 0 4874 2282 5068 24824;24825;24826;24827 25034;25035 25034 2 DLSTPGLEK SVLFDTMQHHLALNRDLSTPGLEKDSGGKT HLALNRDLSTPGLEKDSGGKTPGDFSYAYQ R D L E K D 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 0 958.49713 P46821 P46821 1850 1858 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.041602 33.263 By MS/MS 1 1.1484 1.1042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1484 1.1042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2022500 983440 1039100 0 0 0 0 0 0 0 0 0 2022500 983440 1039100 0 0 0 0 0 0 4875 2347 5069 24828 25036;25037 25037 2 DLSTVEALQNLK CPNLTYLNLSGNKIKDLSTVEALQNLKNLK KIKDLSTVEALQNLKNLKSLDLFNCEITNL K D L L K N 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 12 0 1329.714 E9PPH5;Q9BTT0 E9PPH5 52 63 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.003025 47.187 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.87647 0.74317 104.67 5 Median 0.083259 0.087262 NaN 1 0 Median 1.0636 0.89664 26.549 2 0 Median 1.123 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65597 0.57083 NaN 1 0 Median 50585000 27868000 22717000 10351000 9732800 617980 36745000 16543000 20202000 3439100 1563800 1875200 0 0 0 0 0 0 49584 27765 21819 4876 978 5070 24829;24830;24831;24832;24833 25038;25039 25038 2 DLSYCLSGMYDHR GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC R D L H R Y 0 1 0 2 1 0 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 0 13 0 1615.6759 P52597 P52597 263 275 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3 0.0001029 74.987 By matching By matching By MS/MS 1 1 3 1.1666 1.1694 16.156 5 Median 1.2449 1.2187 NaN 1 0 Median 1.4333 1.2785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9845 0.9817 14.851 3 0 Median NaN NaN NaN 0 0 Median 22471000 10627000 11845000 776010 301030 474980 212490 85630 126860 0 0 0 0 0 0 21483000 10240000 11243000 0 0 0 4877 2452 5071;5072 24834;24835;24836;24837;24838 25040;25041;25042;25043 25043 1144 4 DLTDEEKQEYLNEYEAEK LKLWEIGKIIGGMWRDLTDEEKQEYLNEYE DEEKQEYLNEYEAEKIEYNESMKAYHNSPA R D L E K I 1 0 1 2 0 1 6 0 0 0 2 2 0 0 0 0 1 0 2 0 0 0 18 1 2244.991 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85;J3QKX6;A0A2R8YFC8;A0A2R8YEB8 Q969G3 106 123 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 2.3298E-11 98.796 By MS/MS By MS/MS 2 1 0.97249 1.0197 14.312 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89071 0.93154 12.783 2 0 Median 1.1294 1.1289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21328000 10694000 10634000 0 0 0 0 0 0 18655000 9505500 9149200 2673300 1189000 1484400 0 0 0 0 0 0 4878 389 5073 24839;24840;24841 25044;25045;25046 25045 3 DLTDEEKQEYLNEYEAEKIEYNESMK LKLWEIGKIIGGMWRDLTDEEKQEYLNEYE NEYEAEKIEYNESMKAYHNSPAYLAYINAK R D L M K A 1 0 2 2 0 1 8 0 0 1 2 3 1 0 0 1 1 0 3 0 0 0 26 2 3239.434 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85;J3QKX6 Q969G3 106 131 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 4 4.8034E-09 48.489 By MS/MS 1 0.71454 0.83813 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71454 0.83813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9913000 5021300 4891600 0 0 0 0 0 0 9913000 5021300 4891600 0 0 0 0 0 0 0 0 0 4879 389 5074 24842 25047;25048 25047 2 DLTDYLMK YALPHAILRLDLAGRDLTDYLMKILTERGY RLDLAGRDLTDYLMKILTERGYSFTTTAER R D L M K I 0 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 0 0 8 0 997.47903 P63267;P62736;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L4N8;A0A2R8YEA7;P68032;P68133;Q562R1 P63261 184 191 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 1;2 0.001176 116.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 7 20 12 14 1.0636 0.99411 19.902 73 Median 1.1422 1.0712 17.34 20 0 Median 1.0931 0.96963 19.897 7 0 Median 0.90847 0.91291 13.018 20 0 Median 1.1456 0.94475 16.005 12 0 Median 0.99731 1.0274 29.034 14 0 Median NaN NaN NaN 0 0 Median 8357300000 3938900000 4418400000 3591900000 1657800000 1934100000 3054100000 1405300000 1648800000 1079400000 571070000 508360000 288990000 130950000 158040000 342820000 173730000 169090000 0 0 0 4880 2625;2630;2595;3035 5075;5076 24843;24844;24845;24846;24847;24848;24849;24850;24851;24852;24853;24854;24855;24856;24857;24858;24859;24860;24861;24862;24863;24864;24865;24866;24867;24868;24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889;24890;24891;24892;24893;24894;24895;24896;24897;24898;24899;24900;24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913;24914;24915 25049;25050;25051;25052;25053;25054;25055;25056;25057;25058;25059;25060;25061;25062;25063;25064;25065;25066;25067;25068;25069;25070;25071;25072;25073;25074;25075;25076;25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093;25094;25095;25096 25061 1258 45 DLTEYLK KFASHCLMNHPDLAKDLTEYLKVRSHDPEE MNHPDLAKDLTEYLKVRSHDPEEAIRHDVI K D L L K V 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 880.4542 Q9NTI5;Q29RF7 Q29RF7 360 366 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A no no 2 0.028199 50.966 By MS/MS 1 1.0156 1.0899 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0156 1.0899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7468700 3499200 3969500 0 0 0 0 0 0 7468700 3499200 3969500 0 0 0 0 0 0 0 0 0 4881 3003;4107 5077 24916 25097 25097 1 DLTEYLSR GKMFIGGLSWDTSKKDLTEYLSRFGEVVDC SWDTSKKDLTEYLSRFGEVVDCTIKTDPVT K D L S R F 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 8 0 995.49238 A0A087WUK2;O14979 A0A087WUK2 163 170 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 0.002116 99.375 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 2 3 3 7 2 1.1049 1.0997 8.0357 18 Median 1.1743 1.1646 NaN 1 0 Median 1.4198 1.2073 8.8422 2 0 Median 1.0859 1.0971 1.4407 3 1 Median 1.2964 1.0634 12.222 3 0 Median 1.0776 1.0878 6.9284 7 0 Median 1.3962 1.1569 7.4937 2 0 Median 379070000 173510000 205550000 6427000 2886800 3540200 3011300 975610 2035700 41165000 19642000 21523000 11771000 5022800 6748000 293860000 135580000 158280000 22831000 9406300 13425000 4882 32 5078 24917;24918;24919;24920;24921;24922;24923;24924;24925;24926;24927;24928;24929;24930;24931;24932;24933;24934 25098;25099;25100;25101;25102;25103;25104;25105;25106;25107;25108;25109;25110;25111;25112;25113;25114 25101 17 DLTGELEYATK DDTEREPDQTFSLNRDLTGELEYATKISRF SLNRDLTGELEYATKISRFSNVYHLSIHIS R D L T K I 1 0 0 1 0 0 2 1 0 0 2 1 0 0 0 0 2 0 1 0 0 0 11 0 1238.603 Q9GZP4;X6R8S9;X6RHB9 Q9GZP4 132 142 PITHD1 PITH domain-containing protein 1 yes no 2 0.00018162 93.667 By MS/MS By matching By matching 1 1 1 1.2371 1.1533 12.681 3 Plateau 1.2371 1.1533 NaN 1 0 Median 1.3569 1.1404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1451 0.92088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19748000 8763100 10985000 14488000 6489300 7998200 5139000 2218000 2921100 0 0 0 121150 55794 65353 0 0 0 0 0 0 4883 3910 5079 24935;24936;24937 25115;25116 25116 2 DLTGQVPTPVVK LKHLDFLKQPLATQKDLTGQVPTPVVKQTK TQKDLTGQVPTPVVKQTKLKQRADSRESLK K D L V K Q 0 0 0 1 0 1 0 1 0 0 1 1 0 0 2 0 2 0 0 3 0 0 12 0 1252.7027 P46821;D6RA32;D6RA40 P46821 520 531 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.0054188 59.426 By MS/MS By MS/MS 1 2 0.81212 0.73276 27.538 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51951 0.57435 NaN 1 1 Median 0.90754 0.8539 21.638 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19336000 11589000 7746500 0 0 0 0 0 0 9752800 6769500 2983200 9582900 4819600 4763200 0 0 0 0 0 0 4884 2347 5080 24938;24939;24940 25117;25118;25119 25118 3 DLTGVQNLR IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL SEDYGRDLTGVQNLRKKHKRLEAELAAHEP R D L L R K 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1014.5458 A0A0D9SF54;Q13813 Q13813 1795 1803 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 1.5904E-08 169.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.0131 0.89495 9.4101 7 Median NaN NaN NaN 0 0 Median 1.1268 0.93154 9.2034 2 0 Median 0.95815 1.0445 NaN 1 0 Median 1.0941 0.95941 13.209 2 0 Median 0.87114 0.89495 NaN 1 0 Median 1.0131 0.83922 NaN 1 0 Median 130900000 64195000 66710000 0 0 0 49026000 22157000 26868000 47335000 24636000 22700000 17109000 8272900 8835700 11225000 6348300 4876900 6209900 2780600 3429400 4885 264;2838 5081 24941;24942;24943;24944;24945;24946;24947;24948 25120;25121;25122;25123;25124;25125;25126;25127;25128;25129;25130;25131;25132 25125 13 DLTHSDSESSLHMSDR RQRLTEPQHGLGSQRDLTHSDSESSLHMSD LTHSDSESSLHMSDRQRVAPKPPQMSRAAD R D L D R Q 0 1 0 3 0 0 1 0 2 0 2 0 1 0 0 5 1 0 0 0 0 0 16 0 1815.7694 Q13586;E9PNJ4;H0YDB2 Q13586 515 530 STIM1 Stromal interaction molecule 1 yes no 3 0.01352 22.154 By MS/MS By matching By matching 1 1 1 0.88576 0.87762 27.375 3 Median 0.88576 0.87762 NaN 1 0 Median 1.5215 1.3351 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75248 0.79823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4061700 2143900 1917900 1655500 940160 715320 1548100 767530 780590 0 0 0 858150 436190 421960 0 0 0 0 0 0 4886 2827 5082 24949;24950;24951 25133 25133 1 DLTIPESSTVK EQSPRKRGRPPKDEKDLTIPESSTVKGMMA KDEKDLTIPESSTVKGMMAGPMAAFKWQPT K D L V K G 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 2 2 0 0 1 0 0 11 0 1188.6238 Q49A26;K7EMM8;K7EPU6 Q49A26 180 190 GLYR1 Putative oxidoreductase GLYR1 yes no 2 0.00018651 76.943 By MS/MS By matching By matching 1 1 1 0.81296 0.71384 46.837 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6666 0.64978 NaN 1 0 Median 0.81296 0.71384 NaN 1 0 Median 1.5996 1.5266 NaN 1 0 Median NaN NaN NaN 0 0 Median 15525000 7789700 7735100 0 0 0 0 0 0 10253000 5857700 4395800 2116800 764730 1352100 3154500 1167300 1987200 0 0 0 4887 3018 5083 24952;24953;24954 25134 25134 1 DLTIPGLSPAER TEFYVMEHVQGRIFRDLTIPGLSPAERSAI IFRDLTIPGLSPAERSAIYVATVETLAQLH R D L E R S 1 1 0 1 0 0 1 1 0 1 2 0 0 0 2 1 1 0 0 0 0 0 12 0 1267.6772 Q709F0;F8WEV0;D6RDI8 Q709F0 131 142 ACAD11 Acyl-CoA dehydrogenase family member 11 yes no 2 0.0062099 39.022 By MS/MS 2 0.52278 0.5565 0.021004 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52278 0.5565 0.021004 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3000900 1775900 1225100 0 0 0 0 0 0 3000900 1775900 1225100 0 0 0 0 0 0 0 0 0 4888 3206 5084 24955;24956 25135 25135 1 DLTLDQAYSYAVENAK PLVIQMTDDEKYLWKDLTLDQAYSYAVENA LTLDQAYSYAVENAKDIIACGFDINKTFIF K D L A K D 3 0 1 2 0 1 1 0 0 0 2 1 0 0 0 1 1 0 2 1 0 0 16 0 1799.8578 P23381;G3V3Y5;G3V3H8 P23381 205 220 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 0.050901 22.028 By MS/MS 1 1.2662 1.215 NaN 1 Median 1.2662 1.215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2783000 1216500 1566500 2783000 1216500 1566500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4889 2111 5085 24957 25136 25136 1 DLTLEENQVK EFEERMEEESQSQGRDLTLEENQVKKYHRL QSQGRDLTLEENQVKKYHRLKEEASKRAAT R D L V K K 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1187.6034 Q14683;G8JLG1 Q14683 364 373 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00086903 90.709 By MS/MS By MS/MS 1 1 0.89138 0.84441 0.066447 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80577 0.84401 NaN 1 1 Median 0.98609 0.8448 NaN 1 0 Median 23038000 12488000 10550000 0 0 0 0 0 0 0 0 0 0 0 0 19150000 10359000 8791400 3887400 2129200 1758200 4890 2889 5086 24958;24959 25137;25138 25137 1 DLTLEENQVKK EFEERMEEESQSQGRDLTLEENQVKKYHRL SQGRDLTLEENQVKKYHRLKEEASKRAATL R D L K K Y 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1315.6983 Q14683;G8JLG1 Q14683 364 374 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.00016164 128.38 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 3 1.058 1.0555 20.944 14 Median 1.3006 1.3474 6.4822 2 0 Median 1.174 1.0946 12.843 3 0 Plateau 0.80595 0.92602 2.8115 2 0 Median 1.1577 1.0824 28.244 3 0 Median 0.9222 0.99576 19.645 2 0 Median 1.0791 0.96881 21.937 2 0 Median 51339000 25685000 25654000 1891800 844740 1047100 5567000 2514200 3052900 11912000 6276900 5634800 3445500 1553200 1892400 24089000 12576000 11512000 4434500 1920000 2514500 4891 2889 5087 24960;24961;24962;24963;24964;24965;24966;24967;24968;24969;24970;24971;24972;24973;24974 25139;25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151 25143 13 DLTNVQNLQK LYEVEGHLASDDYGKDLTNVQNLQKKHALL DDYGKDLTNVQNLQKKHALLEADVAAHQDR K D L Q K K 0 0 2 1 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 A0A0D9SF54;Q13813 Q13813 709 718 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 3.1834E-23 160.75 By MS/MS By MS/MS By MS/MS 2 2 1 1.0752 1.0075 8.476 4 Median NaN NaN NaN 0 0 Median 1.0874 0.96572 6.8264 2 0 Median 1.0265 1.1313 NaN 1 1 Median 1.1112 1.0015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49356000 23900000 25456000 0 0 0 26885000 13365000 13520000 17309000 7984400 9325000 5161100 2550100 2611000 0 0 0 0 0 0 4892 264;2838 5088 24975;24976;24977;24978;24979 25152;25153;25154;25155;25156;25157;25158 25153 7 DLTPAVTDNDEADKK NFSQEYLFQEQYLSKDLTPAVTDNDEADKK DLTPAVTDNDEADKKAGQATEGHCPRQQWA K D L K K A 2 0 1 4 0 0 1 0 0 0 1 2 0 0 1 0 2 0 0 1 0 0 15 1 1630.7686 P57772;C9J8T0 P57772 383 397 EEFSEC Selenocysteine-specific elongation factor yes no 3 0.026531 16.666 By MS/MS By matching By matching 1 1 1 1.1076 1.0227 42.2 3 Median 0.65883 0.62744 NaN 1 0 Median 1.5825 1.4538 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1076 1.0227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4893500 1973600 2919900 1972400 986610 985820 1885600 513640 1371900 0 0 0 1035500 473380 562140 0 0 0 0 0 0 4893 2519 5089 24980;24981;24982 25159;25160 25160 2 DLTQEQTEK ______________________________ AAPEERDLTQEQTEKLLQFQDLTGIESMDQ R D L E K L 0 0 0 1 0 2 2 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1090.5142 Q96CS3 Q96CS3 8 16 FAF2 FAS-associated factor 2 yes yes 2 0.012688 46.129 By MS/MS 1 1.1194 1.0991 NaN 1 Median 1.1194 1.0991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1275200 611370 663780 1275200 611370 663780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4894 3620 5090 24983 25161 25161 1 DLTQMADELRR PKYYADGEDAYAMKRDLTQMADELRRHLEL AMKRDLTQMADELRRHLELKEKGRHVVLGA R D L R R H 1 2 0 2 0 1 1 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 11 1 1346.6612 P41227;C9JN83 P41227 150 160 NAA10 N-alpha-acetyltransferase 10 yes no 2;3 0.00568 48.794 By matching By matching By MS/MS By matching 1 2 2 3 1.2829 1.2481 23.405 8 Median 1.4531 1.5644 NaN 1 0 Median 1.2576 1.1119 13.408 2 0 Median 1.3824 1.4429 15.465 2 0 Median 1.3656 1.2744 24.754 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12795000 5125400 7669300 1555600 589030 966550 964790 434690 530100 7716000 2945800 4770100 2558400 1155900 1402500 0 0 0 0 0 0 4895 2298 5091 24984;24985;24986;24987;24988;24989;24990;24991 25162;25163 25162 2 DLTSVNILLKK LHGLESQIQSDDYGKDLTSVNILLKKQQML DYGKDLTSVNILLKKQQMLENQMEVRKKEI K D L K K Q 0 0 1 1 0 0 0 0 0 1 3 2 0 0 0 1 1 0 0 1 0 0 11 1 1242.7547 Q01082;A0A087WUZ3;O15020 Q01082 1411 1421 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.059327 27.303 By MS/MS By matching 1 1 1.125 1.14 11.065 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0713 1.2327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1813 1.0542 NaN 1 0 Median 3341000 1539300 1801700 0 0 0 0 0 0 3149400 1441000 1708400 0 0 0 0 0 0 191570 98288 93281 4896 2681;1512 5092 24992;24993 25164 25164 1 DLTSWVTEMK LNDSYRLQRFLADFRDLTSWVTEMKALINA LADFRDLTSWVTEMKALINADELASDVAGA R D L M K A 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 10 0 1208.5747 A0A0D9SF54;Q13813 Q13813 372 381 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0009196 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 5 4 2 1 1.0383 1.0543 13.524 17 Median 1.3403 1.2906 NaN 1 0 Median 1.2942 1.1299 15.951 4 0 Median 0.92398 1.0183 16.098 5 2 Median 1.074 0.99176 12.198 4 0 Median 0.9789 1.0157 5.2745 2 0 Median 1.2344 1.0731 NaN 1 0 Median 59278000 28354000 30924000 3802000 1586200 2215800 8875900 3773100 5102700 38463000 18949000 19515000 2615800 1301600 1314200 5430600 2699500 2731100 90975 45219 45756 4897 264;2838 5093;5094 24994;24995;24996;24997;24998;24999;25000;25001;25002;25003;25004;25005;25006;25007;25008;25009;25010 25165;25166;25167;25168;25169;25170;25171;25172;25173 25167 120 9 DLTSYAINPER YQQQRKVHVPGPECRDLTSYAINPERFREE PECRDLTSYAINPERFREEFEGPPLPPERS R D L E R F 1 1 1 1 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 11 0 1277.6252 Q5T5X7 Q5T5X7 669 679 BEND3 BEN domain-containing protein 3 yes yes 2 0.018428 54.416 By MS/MS 1 1.2117 1.2972 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2117 1.2972 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4060800 1593600 2467300 0 0 0 0 0 0 4060800 1593600 2467300 0 0 0 0 0 0 0 0 0 4898 3090 5095 25011 25174 25174 1 DLTTAGAVTQCYR YDSRSGTHNMYREYRDLTTAGAVTQCYRDM YRDLTTAGAVTQCYRDMGARHRARAHSIQI R D L Y R D 2 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 3 0 1 1 0 0 13 0 1454.6824 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 70 82 RPL18A 60S ribosomal protein L18a yes no 2 1.4533E-06 115.57 By matching By MS/MS By MS/MS By matching 1 4 1 1 1.316 1.1824 91.11 7 Median 0.12368 0.13221 NaN 1 0 Median 1.4735 1.2345 32.946 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1845 1.1824 NaN 1 0 Median 2.307 2.1005 NaN 1 0 Median 57287000 31134000 26153000 12868000 11328000 1540100 37929000 17150000 20779000 0 0 0 0 0 0 5681500 2441800 3239600 809080 214940 594140 4899 1433 5096 25012;25013;25014;25015;25016;25017;25018 25175;25176;25177;25178;25179;25180 25178 6 DLTTGYDDSQPDKK NYPKACGKFEISAIRDLTTGYDDSQPDKKA RDLTTGYDDSQPDKKAVLPTSKSSQMITFT R D L K K A 0 0 0 4 0 1 0 1 0 0 1 2 0 0 1 1 2 0 1 0 0 0 14 1 1581.7158 Q96G03 Q96G03 520 533 PGM2 Phosphoglucomutase-2 yes yes 2;3 0.00010163 83.397 By MS/MS By MS/MS 2 4 0.96201 0.90094 27.016 5 Median 0.72979 0.68848 2.3884 2 0 Median 1.085 1.0169 18.543 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21307000 10326000 10981000 11834000 6111000 5722700 9473600 4215400 5258200 0 0 0 0 0 0 0 0 0 0 0 0 4900 3652 5097 25019;25020;25021;25022;25023;25024 25181;25182;25183;25184;25185;25186 25185 6 DLVAIEAK AGVMALQRKLTGMERDLVAIEAKLSDLQKE KLTGMERDLVAIEAKLSDLQKEAEKLESEH R D L A K L 2 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 857.48583 Q01082;A0A087WUZ3 Q01082 1004 1011 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0081051 64.265 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0227 0.95697 7.2183 6 Median 1.0819 1.0285 NaN 1 0 Median 1.0821 0.95697 2.2213 2 0 Median 0.85728 0.93346 11.624 2 0 Median 0.97984 0.88492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43924000 22145000 21779000 2570100 1225700 1344400 13891000 6515300 7375700 24096000 12736000 11360000 3367100 1668300 1698700 0 0 0 0 0 0 4901 2681 5098 25025;25026;25027;25028;25029;25030 25187;25188;25189;25190;25191;25192 25191 6 DLVALPASLISQIGYR EPVPLESRSCVLIRRDLVALPASLISQIGY LVALPASLISQIGYRCHPKLYSEGDPGEKL R D L Y R C 2 1 0 1 0 1 0 1 0 2 3 0 0 0 1 2 0 0 1 1 0 0 16 0 1714.9618 Q96BF6 Q96BF6 316 331 NACC2 Nucleus accumbens-associated protein 2 yes yes 2 0.0047216 33.886 By MS/MS 2 0.66074 0.67918 12.615 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66074 0.67918 12.615 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1669900 917160 752780 0 0 0 0 0 0 1669900 917160 752780 0 0 0 0 0 0 0 0 0 4902 3606 5099 25031;25032 25193;25194 25194 2 DLVAQAPLKPK KIHPLVRLPLATIVKDLVAQAPLKPKTPRG TIVKDLVAQAPLKPKTPRGTKTPINRNQLS K D L P K T 2 0 0 1 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 1 0 0 11 1 1178.7023 O94776 O94776 523 533 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0007206 112.84 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 0.74032 0.75472 7.5341 9 Median 0.73654 0.76383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67234 0.72483 9.9775 2 0 Median 0.77967 0.74049 11.311 2 0 Median 0.67408 0.75472 NaN 1 0 Median 0.77343 0.68932 8.0422 3 0 Median 56867000 33721000 23146000 1077500 388850 688630 0 0 0 29660000 18284000 11376000 9206300 5217900 3988400 10954000 6251700 4702500 5969200 3578400 2390800 4903 1723 5100 25033;25034;25035;25036;25037;25038;25039;25040;25041 25195;25196;25197;25198;25199;25200;25201;25202 25195 8 DLVDAASAVTEAVK TAEKLGLDICSAKTRDLVDAASAVTEAVKA RDLVDAASAVTEAVKAQFKINHPDSEDLAF R D L V K A 4 0 0 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 3 0 0 14 0 1387.7195 Q96EM0;D6RC46;E9PKK7 Q96EM0 211 224 L3HYPDH Trans-3-hydroxy-L-proline dehydratase yes no 2 0.00078971 60.434 By MS/MS 1 1.0003 0.94054 NaN 1 Median 1.0003 0.94054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2739100 1409200 1329900 2739100 1409200 1329900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4904 3638 5101 25042 25203;25204 25203 2 DLVDYITTHYK TILGPTENIKSISRKDLVDYITTHYKGPRI ISRKDLVDYITTHYKGPRIVLAAAGGVSHD K D L Y K G 0 0 0 2 0 0 0 0 1 1 1 1 0 0 0 0 2 0 2 1 0 0 11 0 1366.6769 O75439;G3V0E4;F8WAZ6 O75439 225 235 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.004516 47.823 By MS/MS 1 1.344 1.1504 NaN 1 Median NaN NaN NaN 0 0 Median 1.344 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2653500 1032900 1620600 0 0 0 2653500 1032900 1620600 0 0 0 0 0 0 0 0 0 0 0 0 4905 1673 5102 25043 25205 25205 1 DLVEAVAHILGIR LAEKAAAYRDRDSQRDLVEAVAHILGIRDL QRDLVEAVAHILGIRDLAAVNLDSSLADLG R D L I R D 2 1 0 1 0 0 1 1 1 2 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1404.8089 P49327;A0A0U1RQF0 P49327 2126 2138 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0013302 55.567 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.4275 1.2666 29.862 7 Median 1.0753 1.042 5.855 2 0 Median 1.523 1.28 0.53024 3 0 Plateau 1.1153 1.2399 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4164 2.5077 NaN 1 0 Median NaN NaN NaN 0 0 Median 10989000 4656200 6332500 4637000 2207600 2429400 6200800 2394800 3806000 72333 31282 41051 0 0 0 78579 22541 56038 0 0 0 4906 2377 5103 25044;25045;25046;25047;25048;25049;25050 25206;25207;25208 25206 3 DLVGELGTALR PVSWNWNSKDVGPHRDLVGELGTALRKRNI GPHRDLVGELGTALRKRNIRYGLYHSLLEW R D L L R K 1 1 0 1 0 0 1 2 0 0 3 0 0 0 0 0 1 0 0 1 0 0 11 0 1142.6295 P04066 P04066 163 173 FUCA1 Tissue alpha-L-fucosidase yes yes 2 0.045866 45.368 By MS/MS 1 1.2446 1.2417 NaN 1 Median 1.2446 1.2417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3062600 1175600 1887000 3062600 1175600 1887000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4907 1842 5104 25051 25209 25209 1 DLVGMGHHFLPSEPTK RQGQRDLELPDMHMRDLVGMGHHFLPSEPT LVGMGHHFLPSEPTKWNVEDVYEFIRSLPG R D L T K W 0 0 0 1 0 0 1 2 2 0 2 1 1 1 2 1 1 0 0 1 0 0 16 0 1763.8665 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 778 793 PHC2 Polyhomeotic-like protein 2 yes no 3 0.00082341 43.791 By MS/MS By matching 3 1 0.77733 0.75687 6.6133 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76389 0.78941 7.1682 3 1 Median 0.84994 0.72567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25566000 16071000 9494400 0 0 0 0 0 0 25353000 15965000 9388000 212980 106640 106340 0 0 0 0 0 0 4908 180 5105;5106 25052;25053;25054;25055 25210;25211;25212 25211 81 3 DLVKQFQNVQQVEYSSIR LRLVKFLPEILALQRDLVKQFQNVQQVEYS KQFQNVQQVEYSSIRGFLSKHSSDGLRQLL R D L I R G 0 1 1 1 0 4 1 0 0 1 1 1 0 1 0 2 0 0 1 3 0 0 18 1 2180.1226 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4842 4859 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.067005 9.0466 By MS/MS 1 0.77938 0.90189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77938 0.90189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4134400 2493500 1641000 0 0 0 0 0 0 4134400 2493500 1641000 0 0 0 0 0 0 0 0 0 4909 189 5107 25056 25213 25213 1 DLVLGPSGVLQGIRPGK CDITFACVSDPKAAKDLVLGPSGVLQGIRP VLGPSGVLQGIRPGKCYVDMSTVDADTVTE K D L G K C 0 1 0 1 0 1 0 4 0 1 3 1 0 0 2 1 0 0 0 2 0 0 17 1 1704.9887 Q49A26;K7EMM8 Q49A26 339 355 GLYR1 Putative oxidoreductase GLYR1 yes no 2;3 0.00012257 66.289 By MS/MS By MS/MS By matching 2 3 2 0.58087 0.60403 23.217 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47531 0.53109 39.234 2 0 Median NaN NaN NaN 0 0 Median 0.53627 0.56198 5.7439 3 0 Median 0.83144 0.76623 7.2778 2 0 Median 16097000 10011000 6086400 0 0 0 0 0 0 9688700 6190000 3498700 0 0 0 5905600 3543300 2362400 502770 277480 225280 4910 3018 5108 25057;25058;25059;25060;25061;25062;25063 25214;25215;25216;25217 25217 3 DLVLPTQALPASPALK GAQDSEAAFAKLDQKDLVLPTQALPASPAL LVLPTQALPASPALKNKRPRKDENESSAPA K D L L K N 3 0 0 1 0 1 0 0 0 0 4 1 0 0 3 1 1 0 0 1 0 0 16 0 1632.9451 H3BR06;Q15554;U3KQ35;J3KSZ6 H3BR06 233 248 TERF2 Telomeric repeat-binding factor 2 yes no 2 0.00011545 68.069 By MS/MS By matching 2 2 0.56955 0.54375 36.582 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42624 0.43497 22.676 2 0 Median 0.83136 0.72042 30.899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12294000 8177500 4116300 0 0 0 0 0 0 11901000 7943400 3957500 392880 234100 158780 0 0 0 0 0 0 4911 1226 5109 25064;25065;25066;25067 25218;25219;25220 25220 3 DLVLSVHNR WIRYSQYLDRQLKVKDLVLSVHNRAIRNCP RQLKVKDLVLSVHNRAIRNCPWTVALWSRY K D L N R A 0 1 1 1 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 9 0 1051.5774 A0A499FI31;Q15020 A0A499FI31 380 388 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0054443 71.501 By MS/MS 1 1.1851 0.99298 NaN 1 Median NaN NaN NaN 0 0 Median 1.1851 0.99298 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8718700 3790400 4928200 0 0 0 8718700 3790400 4928200 0 0 0 0 0 0 0 0 0 0 0 0 4912 473 5110 25068 25221 25221 1 DLVPDLSNFYAQYK KVSKIYPLPHMYVIKDLVPDLSNFYAQYKS KDLVPDLSNFYAQYKSIEPYLKKKDESQEG K D L Y K S 1 0 1 2 0 1 0 0 0 0 2 1 0 1 1 1 0 0 2 1 0 0 14 0 1671.8144 P21912;A0A087WWT1;A0A087WXX8 P21912 138 151 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 2 3.4453E-08 105.86 By MS/MS By matching 1 1 1.1346 1.0045 26.188 2 Median 0.89396 0.8347 NaN 1 0 Median 1.4401 1.2089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18975000 9245200 9730000 12680000 6704900 5975200 6295100 2540300 3754800 0 0 0 0 0 0 0 0 0 0 0 0 4913 2093 5111 25069;25070 25222 25222 1 DLVTEDTGVR NAEMSTESYDQGKDRDLVTEDTGVRNEAQE QGKDRDLVTEDTGVRNEAQEEIYKKGQSKR R D L V R N 0 1 0 2 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 2 0 0 10 0 1103.5459 Q13823 Q13823 181 190 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 0.013464 57.96 By MS/MS By MS/MS By matching 1 1 1 1.0031 0.82681 24.812 3 Median NaN NaN NaN 0 0 Median 1.1439 1.0443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59826 0.63596 NaN 1 0 Median 1.0031 0.82681 NaN 1 0 Median 2977100 1793700 1183400 0 0 0 514630 207610 307020 0 0 0 0 0 0 2038700 1330200 708410 423850 255880 167970 4914 2839 5112 25071;25072;25073 25223;25224 25224 1 DLVVAYGTTENSPVTFAHFPEDTVEQK PPELIRAIINKINMKDLVVAYGTTENSPVT PVTFAHFPEDTVEQKAESVGRIMPHTEARI K D L Q K A 2 0 1 2 0 1 3 1 1 0 1 1 0 2 2 1 4 0 1 4 0 0 27 0 2993.4294 Q96CM8;E9PF16 Q96CM8 403 429 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial yes no 3 0.066526 6.0301 By MS/MS By matching 2 1 0.37237 0.3608 83.104 3 Median 0.37237 0.3608 0 2 0 Median 1.5431 1.5219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2295300 1711100 584270 2093800 1608800 485010 201550 102280 99262 0 0 0 0 0 0 0 0 0 0 0 0 4915 916 5113 25074;25075;25076 25225 25225 1 DLWSLLHHQK SFCLYHTPVTPQELRDLWSLLHHQKVSPEE PQELRDLWSLLHHQKVSPEEITSLWSELFN R D L Q K V 0 0 0 1 0 1 0 0 2 0 3 1 0 0 0 1 0 1 0 0 0 0 10 0 1275.6724 Q9NU22 Q9NU22 2990 2999 MDN1 Midasin yes yes 3 0.029339 32.523 By MS/MS 1 0.7498 0.80148 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7498 0.80148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12163000 8121100 4042200 0 0 0 0 0 0 12163000 8121100 4042200 0 0 0 0 0 0 0 0 0 4916 4112 5114 25077 25226 25226 1 DLYANTVLSGGTTMYPGIADR TTFNSIMKCDVDIRKDLYANTVLSGGTTMY VLSGGTTMYPGIADRMQKEITALAPSTMKI K D L D R M 2 1 1 2 0 0 0 3 0 1 2 0 1 0 1 1 3 0 2 1 0 0 21 0 2214.0627 P63261;P60709;A0A2R8Y793 P63261 292 312 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2;3 2.6999E-173 256.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 15 10 12 2 15 9 0.92491 0.86078 23.763 63 Median 0.95454 0.95735 45.464 15 1 Median 0.98772 0.84384 5.4678 10 1 Median 0.75235 0.81783 14.04 12 3 Median 1.0726 0.91643 4.1756 2 0 Median 0.82179 0.86914 9.325 15 1 Median 1.1518 0.92592 12.608 9 0 Median 2219500000 1195400000 1024100000 687550000 341570000 345980000 146210000 71880000 74332000 1271800000 721760000 550080000 11324000 5442100 5881800 97124000 52445000 44679000 5407800 2297300 3110600 4917 2625 5115;5116 25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093;25094;25095;25096;25097;25098;25099;25100;25101;25102;25103;25104;25105;25106;25107;25108;25109;25110;25111;25112;25113;25114;25115;25116;25117;25118;25119;25120;25121;25122;25123;25124;25125;25126;25127;25128;25129;25130;25131;25132;25133;25134;25135;25136;25137;25138;25139;25140 25227;25228;25229;25230;25231;25232;25233;25234;25235;25236;25237;25238;25239;25240;25241;25242;25243;25244;25245;25246;25247;25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258;25259;25260;25261;25262;25263;25264;25265;25266;25267;25268;25269;25270;25271;25272;25273;25274;25275;25276;25277;25278;25279;25280;25281;25282;25283;25284;25285;25286;25287;25288;25289;25290;25291;25292;25293;25294;25295;25296;25297;25298;25299;25300;25301;25302;25303;25304;25305;25306;25307;25308;25309;25310;25311;25312;25313;25314 25259 1290 88 DLYDAGVK DGSVIDYELIDQDARDLYDAGVKRKGTDVP LIDQDARDLYDAGVKRKGTDVPKWISIMTE R D L V K R 1 0 0 2 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 879.4338 P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 197 204 ANXA2 Annexin A2;Annexin yes no 2 0.010576 58.604 By MS/MS By MS/MS By MS/MS 1 1 2 1.0853 0.97512 11.184 4 Median NaN NaN NaN 0 0 Median 1.0482 0.87799 NaN 1 0 Median 1.1088 1.0686 NaN 1 0 Median 1.1554 0.97871 13.462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102130000 49751000 52379000 0 0 0 32552000 18702000 13850000 25826000 11903000 13923000 43751000 19145000 24606000 0 0 0 0 0 0 4918 1885 5117 25141;25142;25143;25144 25315;25316;25317;25318 25318 4 DLYDAGVKR DGSVIDYELIDQDARDLYDAGVKRKGTDVP IDQDARDLYDAGVKRKGTDVPKWISIMTER R D L K R K 1 1 0 2 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 1 1035.5349 P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 197 205 ANXA2 Annexin A2;Annexin yes no 2 0.00039739 111.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 1 3 1 1 1.1874 1.11 40.943 8 Median 1.1575 1.1655 NaN 1 1 Median 0.67481 0.61545 72.126 2 2 Median 1.2056 1.3061 NaN 1 1 Median 1.2 1.0824 8.1367 2 1 Median 1.1894 1.2864 NaN 1 0 Median 1.194 1.0747 NaN 1 0 Median 109480000 51777000 57698000 15902000 6982400 8919300 37903000 21136000 16767000 18545000 7913900 10631000 31779000 13557000 18222000 3158500 1211900 1946600 2187500 975590 1211900 4919 1885 5118 25145;25146;25147;25148;25149;25150;25151;25152;25153;25154;25155;25156;25157 25319;25320;25321;25322;25323;25324;25325;25326;25327;25328;25329;25330;25331;25332 25329 14 DLYDDKDGLR RAMQDRYMEVSGNLRDLYDDKDGLRKEELN SGNLRDLYDDKDGLRKEELNAISGPNEFAE R D L L R K 0 1 0 4 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 1 1208.5673 Q12874 Q12874 59 68 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 0.00068151 90.657 By MS/MS By MS/MS 2 4 1.04 1.0528 14.782 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9213 1.0312 7.4988 2 0 Median 1.2201 1.1317 18.045 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21540000 10580000 10960000 0 0 0 0 0 0 14176000 7329700 6846700 7363100 3250300 4112800 0 0 0 0 0 0 4920 2767 5119 25158;25159;25160;25161;25162;25163 25333;25334;25335;25336;25337;25338;25339;25340 25335 8 DLYDDKDGLRK RAMQDRYMEVSGNLRDLYDDKDGLRKEELN GNLRDLYDDKDGLRKEELNAISGPNEFAEF R D L R K E 0 1 0 4 0 0 0 1 0 0 2 2 0 0 0 0 0 0 1 0 0 0 11 2 1336.6623 Q12874 Q12874 59 69 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 0.00084587 67.563 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1.021 1.0494 4.944 5 Median NaN NaN NaN 0 0 Median 1.1032 1.0494 NaN 1 0 Median 0.79203 0.97396 NaN 1 0 Median 1.0268 1.0734 3.3398 2 0 Median 0.96071 1.099 NaN 1 0 Median NaN NaN NaN 0 0 Median 17314000 8138300 9175900 0 0 0 3061300 1265500 1795800 5725500 2977000 2748500 2452200 1114000 1338200 6075200 2781800 3293400 0 0 0 4921 2767 5120 25164;25165;25166;25167;25168;25169 25341;25342;25343;25344;25345 25341 5 DLYDIFYSSGGK KLEKRNSCLATANAKDLYDIFYSSGGKGAP NAKDLYDIFYSSGGKGAPETKGAPETKLSG K D L G K G 0 0 0 2 0 0 0 2 0 1 1 1 0 1 0 2 0 0 2 0 0 0 12 0 1363.6296 Q5VUA4 Q5VUA4 1567 1578 ZNF318 Zinc finger protein 318 yes yes 2 0.001303 54.608 By MS/MS 2 1.0864 1.1968 4.92 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0864 1.1968 4.92 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1887700 917740 969940 0 0 0 0 0 0 1887700 917740 969940 0 0 0 0 0 0 0 0 0 4922 3113 5121 25170;25171 25346;25347 25347 2 DLYEDELVPLFEK QPGIGTEVFVGKIPRDLYEDELVPLFEKAG PRDLYEDELVPLFEKAGPIWDLRLMMDPLS R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1608.7923 O43390;B4DT28 O43390 175 187 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 9.0513E-07 100.69 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 4 1 0.90619 0.82901 29.932 12 Median 1.3838 1.3686 10.33 2 0 Median 2.1612 1.8115 NaN 1 0 Median 0.82477 0.81742 9.9299 3 0 Plateau 0.95313 0.81941 NaN 1 0 Median 0.87393 0.8837 13.005 4 0 Median 0.91294 0.72462 NaN 1 0 Median 53563000 26906000 26658000 3987300 1657000 2330300 9964400 4600400 5364000 7727700 4116200 3611600 924640 468820 455820 29016000 15069000 13947000 1943200 993990 949260 4923 1568 5122 25172;25173;25174;25175;25176;25177;25178;25179;25180;25181;25182;25183 25348;25349;25350;25351;25352;25353;25354;25355;25356;25357 25357 10 DLYIDRPLPYLIGSK EDDANGRVELILEPKDLYIDRPLPYLIGSK DLYIDRPLPYLIGSKLFMEQEDVGLGELSS K D L S K L 0 1 0 2 0 0 0 1 0 2 3 1 0 0 2 1 0 0 2 0 0 0 15 1 1761.9665 F8W7U3;J3KP36;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1;Q641Q2;A0A087WYF6;A0A0A0MT65 F8W7U3 89 103 FAM21A;FAM21C WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 3 0.06789 10.787 By MS/MS 1 0.84517 0.86494 NaN 1 Median 0.84517 0.86494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666600 989610 676970 1666600 989610 676970 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4924 143 5123 25184 25358 25358 1 DLYLIPLSAQDPVPSK RGRFGVVANNNRHVKDLYLIPLSAQDPVPS LYLIPLSAQDPVPSKLLPFEGPGLESPRPN K D L S K L 1 0 0 2 0 1 0 0 0 1 3 1 0 0 3 2 0 0 1 1 0 0 16 0 1754.9455 Q9BTC0 Q9BTC0 1158 1173 DIDO1 Death-inducer obliterator 1 yes yes 2 0.022527 39.266 By MS/MS 1 0.49824 0.52231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49824 0.52231 NaN 1 1 Median NaN NaN NaN 0 0 Median 1190900 752950 437990 0 0 0 0 0 0 0 0 0 0 0 0 1190900 752950 437990 0 0 0 4925 3824 5124 25185 25359 25359 1 DLYPDSDWVPPPPPVR ARDRTPPLLYRDRDRDLYPDSDWVPPPPPV LYPDSDWVPPPPPVRERSTRTAATSVPAYE R D L V R E 0 1 0 3 0 0 0 0 0 0 1 0 0 0 6 1 0 1 1 2 0 0 16 0 1848.9046 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 535 550 RBM15 Putative RNA-binding protein 15 yes no 2 0.00039938 47.302 By MS/MS 1 0.65636 0.70389 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65636 0.70389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2709200 1657200 1052000 0 0 0 0 0 0 2709200 1657200 1052000 0 0 0 0 0 0 0 0 0 4926 60 5125 25186 25360 25360 1 DLYQGLLLQR SHLTGKVIKRDVMTRDLYQGLLLQRVPFNV DVMTRDLYQGLLLQRVPFNVDFDKLPRHKK R D L Q R V 0 1 0 1 0 2 0 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 10 0 1217.6768 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2398 2407 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 3.4178E-05 141.78 By MS/MS By MS/MS 1 1 0.84882 0.89259 12.443 2 Median 0.98315 0.97468 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73284 0.81741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9127400 4837800 4289600 7179600 3699300 3480300 0 0 0 1947800 1138500 809230 0 0 0 0 0 0 0 0 0 4927 189 5126 25187;25188 25361;25362 25361 2 DLYVNIQPVQEPK DMAAAAVRCIRKEIRDLYVNIQPVQEPKDQ IRDLYVNIQPVQEPKDQAFGNGNGIIIIAE R D L P K D 0 0 1 1 0 2 1 0 0 1 1 1 0 0 2 0 0 0 1 2 0 0 13 0 1541.809 O00442 O00442 224 236 RTCA RNA 3-terminal phosphate cyclase yes yes 2 0.0014451 53.683 By MS/MS By matching 1 1 0.7165 0.67245 1.1827 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64466 0.6781 NaN 1 0 Median 0.79634 0.66685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6562000 3871100 2690900 0 0 0 0 0 0 5922400 3562200 2360200 639580 308850 330730 0 0 0 0 0 0 4928 1464 5127 25189;25190 25363;25364 25363 2 DMAAAGLHSNVR PAALQSRMNVIDHVRDMAAAGLHSNVRLLS HVRDMAAAGLHSNVRLLSSLLLTMSNNNPE R D M V R L 3 1 1 1 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1240.5983 Q9UJX3;H0YIX7 Q9UJX3 43 54 ANAPC7 Anaphase-promoting complex subunit 7 yes no 2;3 0.00063696 63.283 By MS/MS By MS/MS 4 2 1.0287 0.96499 13.227 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0462 1.0742 10.701 4 0 Median 1.0287 0.84149 1.1629 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5038300 2396100 2642200 0 0 0 0 0 0 4029700 1944200 2085500 1008600 451930 556660 0 0 0 0 0 0 4929 4301 5128 25191;25192;25193;25194;25195;25196 25365;25366;25367;25368;25369;25370 25369 6 DMAAFNERPIIFALSNPTSK GVAAIGGAFSEQILKDMAAFNERPIIFALS NERPIIFALSNPTSKAECSAEQCYKITKGR K D M S K A 3 1 2 1 0 0 1 0 0 2 1 1 1 2 2 2 1 0 0 0 0 0 20 1 2221.1201 P48163 P48163 393 412 ME1 NADP-dependent malic enzyme yes yes 3 8.7272E-06 44.816 By MS/MS 1 0.91619 0.92045 NaN 1 Median 0.91619 0.92045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4900500 2602800 2297700 4900500 2602800 2297700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4930 2359 5129 25197 25371;25372 25372 2 DMAAPGTSSVPAPTAGNAEK DEQIESMFNSKKRVKDMAAPGTSSVPAPTA GTSSVPAPTAGNAEKLEIAKRLALRINAQK K D M E K L 5 0 1 1 0 0 1 2 0 0 0 1 1 0 3 2 2 0 0 1 0 0 20 0 1870.8731 Q7L014;A0A0C4DG89 Q7L014 829 848 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0045953 43.382 By MS/MS 1 0.52898 0.57197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52898 0.57197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2706400 1908800 797620 0 0 0 0 0 0 2706400 1908800 797620 0 0 0 0 0 0 0 0 0 4931 3216 5130 25198 25373 25373 1 DMAAPGTSSVPAPTAGNAEKLEIAK DEQIESMFNSKKRVKDMAAPGTSSVPAPTA PAPTAGNAEKLEIAKRLALRINAQKNLGIE K D M A K R 6 0 1 1 0 0 2 2 0 1 1 2 1 0 3 2 2 0 0 1 0 0 25 1 2425.2159 Q7L014;A0A0C4DG89 Q7L014 829 853 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.0037741 29.198 By MS/MS 1 0.41087 0.47273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41087 0.47273 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6460000 4939200 1520800 0 0 0 0 0 0 6460000 4939200 1520800 0 0 0 0 0 0 0 0 0 4932 3216 5131 25199 25374 25374 1 DMAGAQAAAVALNEEFLR TTETTKTARATGASRDMAGAQAAAVALNEE GAQAAAVALNEEFLRNYFTDKAASYTEEDE R D M L R N 6 1 1 1 0 1 2 1 0 0 2 0 1 1 0 0 0 0 0 1 0 0 18 0 1875.9149 Q14126 Q14126 756 773 DSG2 Desmoglein-2 yes yes 2 0.019918 35.737 By MS/MS 1 0.66326 0.701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66326 0.701 NaN 1 1 Median NaN NaN NaN 0 0 Median 3323900 1799400 1524500 0 0 0 0 0 0 0 0 0 0 0 0 3323900 1799400 1524500 0 0 0 4933 2855 5132 25200 25375 25375 1 DMAQLPETEIAPAK KDKALPLEAEVAPVKDMAQLPETEIAPAKD KDMAQLPETEIAPAKDVAPSTVKEVGLLKD K D M A K D 3 0 0 1 0 1 2 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 14 0 1512.7494 E7EVA0;P27816 E7EVA0 494 507 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.0024852 50.292 By matching By MS/MS 1 4 0.82552 0.71738 11.008 5 Median NaN NaN NaN 0 0 Median 0.8529 0.73607 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79772 0.70712 11.832 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12878000 7531500 5346400 0 0 0 1329000 749970 579000 0 0 0 11549000 6781500 4767400 0 0 0 0 0 0 4934 895 5133;5134 25201;25202;25203;25204;25205 25376;25377;25378 25376 324 3 DMAQLPETEIAPAKDVAPSTVK KDKALPLEAEVAPVKDMAQLPETEIAPAKD TEIAPAKDVAPSTVKEVGLLKDMSPLSETE K D M V K E 4 0 0 2 0 1 2 0 0 1 1 2 1 0 3 1 2 0 0 2 0 0 22 1 2310.1777 E7EVA0;P27816 E7EVA0 494 515 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 7.5043E-05 35.703 By MS/MS 1 0.42765 0.42199 NaN 1 Median 0.42765 0.42199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4676600 3224200 1452500 4676600 3224200 1452500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4935 895 5135 25206 25379 25379 1 DMDDAYDR ASAVGERLWSSKDVRDMDDAYDRLTRHRCR WSSKDVRDMDDAYDRLTRHRCRMVERGIAA R D M D R L 1 1 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 8 0 999.36037 P07686;Q5URX0;H0YA83;H0Y9B6;H0Y9M3 P07686 521 528 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2 0.047416 35.295 By MS/MS 2 1.1934 1.0228 31.199 2 Median NaN NaN NaN 0 0 Median 1.1934 1.0228 31.199 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6818200 2542000 4276200 0 0 0 6818200 2542000 4276200 0 0 0 0 0 0 0 0 0 0 0 0 4936 1888 5136 25207;25208 25380 25380 1 DMDEPSPVPNVEEVTLPK SKRGHREEEQEDLTKDMDEPSPVPNVEEVT EPSPVPNVEEVTLPKTVNTKKDSESAPVKG K D M P K T 0 0 1 2 0 0 3 0 0 0 1 1 1 0 4 1 1 0 0 3 0 0 18 0 1994.9507 Q8TAQ2;F8VXC8 Q8TAQ2 342 359 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 7.5307E-05 48.659 By MS/MS By matching 1 1 0.52877 0.50847 24.371 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39833 0.42798 NaN 1 0 Median 0.70193 0.6041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7379500 4990500 2388900 0 0 0 0 0 0 7127500 4849100 2278400 251960 141450 110510 0 0 0 0 0 0 4937 3455 5137 25209;25210 25381;25382;25383;25384 25383 4 DMEALNVLPPDVLTR IFSKLPKFWEGDFHRDMEALNVLPPDVLTR DMEALNVLPPDVLTRVSEYVPEIVNFVQKI R D M T R V 1 1 1 2 0 0 1 0 0 0 3 0 1 0 2 0 1 0 0 2 0 0 15 0 1681.8709 P49589;B4DKY1 P49589 226 240 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 3.6888E-08 152.85 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.85749 0.74703 18.826 4 Median 0.73323 0.71625 NaN 1 1 Median 0.90005 0.77913 NaN 1 0 Median 0.98394 1.0514 NaN 1 0 Median 0.81695 0.69763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10430000 5707200 4722400 2863300 1679200 1184100 4977000 2653000 2324000 1982200 1074900 907340 607050 300080 306960 0 0 0 0 0 0 4938 2386 5138 25211;25212;25213;25214 25385;25386;25387;25388;25389 25389 5 DMEANLLPGFLR DQTVYIVLDKAEYLRDMEANLLPGFLRLQE YLRDMEANLLPGFLRLQELADRNVTVLFLS R D M L R L 1 1 1 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 12 0 1374.6966 O43913 O43913 132 143 ORC5 Origin recognition complex subunit 5 yes yes 2 0.00015332 92.062 By MS/MS 3 0.92281 0.9379 22.714 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92281 0.9379 22.714 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9330000 3869900 5460200 0 0 0 0 0 0 9330000 3869900 5460200 0 0 0 0 0 0 0 0 0 4939 1599 5139;5140 25215;25216;25217 25390;25391;25392;25393 25390 518 4 DMEESIR QEARNKFEEAERSLKDMEESIRNLEQEISF EEAERSLKDMEESIRNLEQEISFDFGPNGE K D M I R N 0 1 0 1 0 0 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 7 0 878.38038 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 393 399 PRKCSH Glucosidase 2 subunit beta yes no 2 0.016172 69.383 By matching By MS/MS 1 1 1.1148 1.0432 6.8666 2 Median 1.082 1.0951 NaN 1 0 Median 1.1487 0.99371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12981000 6346700 6633900 1865000 813150 1051900 11116000 5533600 5582000 0 0 0 0 0 0 0 0 0 0 0 0 4940 1378 5141 25218;25219 25394;25395 25395 2 DMEKLDEMEFNPVQQPQLNEK RAAVLKMKDPKQIIRDMEKLDEMEFNPVQQ EMEFNPVQQPQLNEKVLKDKRKKLRETFER R D M E K V 0 0 2 2 0 3 4 0 0 0 2 2 2 1 2 0 0 0 0 1 0 0 21 1 2561.1778 Q9Y2W2;F5H5G4 Q9Y2W2 56 76 WBP11 WW domain-binding protein 11 yes no 3 0.0013342 40.369 By MS/MS 1 0.42589 0.47684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42589 0.47684 NaN 1 1 Median NaN NaN NaN 0 0 Median 2666400 1918700 747650 0 0 0 0 0 0 0 0 0 0 0 0 2666400 1918700 747650 0 0 0 4941 4394 5142 25220 25396 25396 1 DMELPTEK KDMQPSMESDMALVKDMELPTEKEVALVKD SDMALVKDMELPTEKEVALVKDVRWPTETD K D M E K E 0 0 0 1 0 0 2 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 8 0 961.44265 E7EVA0;P27816;H7C456 E7EVA0 322 329 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.049701 34.808 By MS/MS By matching 1 1 0.90517 0.80498 4.3354 2 Median NaN NaN NaN 0 0 Median 0.95515 0.83004 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8578 0.78067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2343200 1126800 1216400 0 0 0 1410400 649120 761260 0 0 0 932820 477670 455150 0 0 0 0 0 0 4942 895 5143 25221;25222 25397 25397 1 DMELPTEKEVALVK KDMQPSMESDMALVKDMELPTEKEVALVKD KDMELPTEKEVALVKDVRWPTETDVSSAKN K D M V K D 1 0 0 1 0 0 3 0 0 0 2 2 1 0 1 0 1 0 0 2 0 0 14 1 1600.8382 E7EVA0;P27816;H7C456 E7EVA0 322 335 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 5.5873E-05 78.486 By MS/MS 2 0.93836 1.0865 55.147 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93836 1.0865 55.147 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26073000 13154000 12920000 0 0 0 0 0 0 26073000 13154000 12920000 0 0 0 0 0 0 0 0 0 4943 895 5144 25223;25224 25398;25399 25399 2 DMESDYSGQGVDQLQR PVYGFQWRHFGAEYRDMESDYSGQGVDQLQ MESDYSGQGVDQLQRVIDTIKTNPDDRRII R D M Q R V 0 1 0 3 0 3 1 2 0 0 1 0 1 0 0 2 0 0 1 1 0 0 16 0 1826.7741 P04818 P04818 148 163 TYMS Thymidylate synthase yes yes 2 1.106E-10 109.24 By MS/MS By MS/MS By MS/MS 1 1 1 1.2559 1.2199 7.3957 3 Plateau NaN NaN NaN 0 0 Median 1.3668 1.1456 NaN 1 0 Median 1.2434 1.2199 NaN 1 0 Median 1.2559 1.0527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11806000 4701800 7104000 0 0 0 2808600 1057600 1751000 8065400 3253700 4811700 931770 390510 541260 0 0 0 0 0 0 4944 1852 5145 25225;25226;25227 25400;25401;25402;25403;25404 25401 5 DMESPTKLDVTLAK KDMALATKTEVALAKDMESPTKLDVTLAKD KDMESPTKLDVTLAKDMQPSMESDMALVKD K D M A K D 1 0 0 2 0 0 1 0 0 0 2 2 1 0 1 1 2 0 0 1 0 0 14 1 1546.7913 E7EVA0;P27816;H7C456 E7EVA0 294 307 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 8.9083E-08 107.85 By MS/MS By MS/MS By matching 1 2 2 0.98734 0.91939 30.909 5 Median 0.72593 0.71387 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1874 1.3725 21.903 2 0 Median 0.95827 0.90252 2.62 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27015000 13259000 13755000 5360200 3606000 1754200 0 0 0 20714000 9193700 11520000 940640 459670 480970 0 0 0 0 0 0 4945 895 5146 25228;25229;25230;25231;25232 25405;25406;25407;25408;25409 25408 5 DMEVLSQEIVR NMLEEQLTKNMHLHKDMEVLSQEIVRLSKE HLHKDMEVLSQEIVRLSKECVGPPDPDLEP K D M V R L 0 1 0 1 0 1 2 0 0 1 1 0 1 0 0 1 0 0 0 2 0 0 11 0 1317.6599 A0A087WT45;Q4V328 A0A087WT45 767 777 GRIPAP1 GRIP1-associated protein 1 yes no 2 0.039072 46.462 By MS/MS 1 0.87588 0.86833 NaN 1 Median 0.87588 0.86833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1885700 1165700 720060 1885700 1165700 720060 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4946 15 5147 25233 25410 25410 1 DMFEEALR LFEDIRGQSDIAITKDMFEEALRALADDDF SDIAITKDMFEEALRALADDDFLTVTGKTV K D M L R A 1 1 0 1 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1009.4539 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 788 795 MCM4 DNA replication licensing factor MCM4 yes no 2 0.0035088 91.906 By MS/MS By matching By MS/MS By matching 2 3 1 1 0.85238 0.9063 20.241 7 Median 0.8443 0.82616 14.501 2 0 Median 1.1524 0.9757 28.789 3 0 Median 0.85238 0.9063 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63983 0.68099 NaN 1 0 Median NaN NaN NaN 0 0 Median 26388000 13343000 13045000 11694000 5948300 5745700 5829500 2654600 3174900 7940200 4191900 3748400 0 0 0 923950 548080 375860 0 0 0 4947 441 5148 25234;25235;25236;25237;25238;25239;25240 25411;25412;25413;25414 25411 4 DMFPGPYPR NVMPLGARTASHMTKDMFPGPYPRTPEERA ASHMTKDMFPGPYPRTPEERAAAAKKYNMR K D M P R T 0 1 0 1 0 0 0 1 0 0 0 0 1 1 3 0 0 0 1 0 0 0 9 0 1078.4906 K9J7I2;E9PQ68;O95169;E9PIZ8 K9J7I2 35 43 NDUFB8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial yes no 2 0.0019339 76.035 By MS/MS By matching 1 1 0.87244 0.78478 39.6 2 Median 0.60904 0.59312 NaN 1 0 Median 1.2498 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10931000 6260100 4671200 9372500 5557800 3814700 1558800 702240 856530 0 0 0 0 0 0 0 0 0 0 0 0 4948 980 5149 25241;25242 25415 25415 1 DMFQETMEAMR FLSNGHVTIPGQQDKDMFQETMEAMRIMGI QQDKDMFQETMEAMRIMGIPEEEQMGLLRV K D M M R I 1 1 0 1 0 1 2 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 11 0 1387.557 P35579 P35579 317 327 MYH9 Myosin-9 yes yes 2 0.00013837 92.062 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1.2652 1.1012 15.283 5 Median 1.3768 1.3349 NaN 1 0 Median 1.1553 0.98803 NaN 1 0 Median 0.96136 1.073 NaN 1 0 Median 1.2652 1.1012 NaN 1 0 Median 1.3736 1.4156 NaN 1 0 Median NaN NaN NaN 0 0 Median 9967100 4399500 5567700 3814200 1471500 2342700 4796500 2232300 2564200 489450 253220 236230 72137 30897 41240 794770 411520 383240 0 0 0 4949 2244 5150 25243;25244;25245;25246;25247 25416;25417;25418;25419;25420;25421 25416 6 DMGEMVTQGQTDAQYMFLR KNEIDNYEEDYQKMRDMGEMVTQGQTDAQY MVTQGQTDAQYMFLRQRLQALDTGWNELHK R D M L R Q 1 1 0 2 0 3 1 2 0 0 1 0 3 1 0 0 2 0 1 1 0 0 19 0 2219.965 Q01082;A0A087WUZ3 Q01082 1123 1141 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 2.2711E-17 133.71 By MS/MS By matching By MS/MS By matching By matching 3 2 4 1 1 0.90988 0.97712 19.082 11 Median 1.2005 1.1922 33.371 3 0 Median 1.0411 0.90323 28.364 2 0 Median 0.88952 0.98607 7.7688 4 0 Median 0.99023 0.86029 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0723 0.90186 NaN 1 0 Median 14509000 6798000 7711300 4602000 1948800 2653200 432650 186390 246260 9338800 4598600 4740100 90585 43240 47345 0 0 0 45305 20950 24355 4950 2681 5151;5152 25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258 25422;25423;25424;25425;25426;25427 25426 1362;1363 6 DMGGYSTTTDFIK DAVKKVIKVGKVRTRDMGGYSTTTDFIKSV TRDMGGYSTTTDFIKSVIGHLQTKGSNL__ R D M I K S 0 0 0 2 0 0 0 2 0 1 0 1 1 1 0 1 3 0 1 0 0 0 13 0 1434.6337 A0A087WZN1;O43837;A0A0D9SG66 A0A087WZN1 362 374 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 3.8757E-06 97.734 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.2773 1.193 22.073 6 Median 1.1116 1.0211 NaN 1 0 Median 1.2698 1.0828 1.3073 2 2 Median 1.3157 1.3337 3.3767 2 0 Median 2.2081 1.8458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71983000 31307000 40677000 49491000 21460000 28032000 15782000 6961500 8820800 6176700 2742500 3434200 533080 143270 389810 0 0 0 0 0 0 4951 96 5153 25259;25260;25261;25262;25263;25264 25428;25429;25430;25431 25428 4 DMGTVVLGK SVDGPIRLPIVDKYKDMGTVVLGKLESGSI IVDKYKDMGTVVLGKLESGSICKGQQLVMM K D M G K L 0 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 2 0 0 9 0 918.48445 P15170;H3BR35;Q8IYD1 P15170 312 320 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 2 0.010085 64.567 By MS/MS 1 1.9546 1.8201 NaN 1 Median 1.9546 1.8201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5893800 2155500 3738400 5893800 2155500 3738400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4952 2016 5154 25265 25432 25432 1 DMGYGNWISKPQEEK RDYETAKNYFKKGLKDMGYGNWISKPQEEK DMGYGNWISKPQEEKNFYLCPV________ K D M E K N 0 0 1 1 0 1 2 2 0 1 0 2 1 0 1 1 0 1 1 0 0 0 15 1 1780.809 P55265;A0A3B3IRQ9 P55265 1205 1219 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 0.00016508 48.823 By MS/MS By matching By MS/MS 4 2 2 0.95118 0.93661 13.57 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87831 0.98617 17.77 4 0 Median 0.99888 0.86777 1.5429 2 0 Median 0.91227 1.0216 5.6977 2 1 Median NaN NaN NaN 0 0 Median 38929000 19317000 19612000 0 0 0 0 0 0 23936000 11971000 11965000 571960 268810 303160 14421000 7077100 7344000 0 0 0 4953 2498 5155 25266;25267;25268;25269;25270;25271;25272;25273 25433;25434;25435;25436;25437;25438 25433 6 DMGYHVSMMADSTSR EASIYTGITLSEYFRDMGYHVSMMADSTSR DMGYHVSMMADSTSRWAEALREISGRLAEM R D M S R W 1 1 0 2 0 0 0 1 1 0 0 0 3 0 0 3 1 0 1 1 0 0 15 0 1686.68 P38606 P38606 339 353 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2;3 2.2265E-09 102.4 By MS/MS By matching By matching By matching 2 2 1 1 1.3195 1.1789 4.178 6 Median 1.2184 1.1505 7.3696 2 0 Median 1.3936 1.204 3.4589 2 0 Median 1.1132 1.1726 NaN 1 0 Median 1.3848 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56973000 25144000 31829000 46537000 20284000 26253000 6074700 2592400 3482400 4063600 2129500 1934200 298060 138410 159660 0 0 0 0 0 0 4954 2276 5156 25274;25275;25276;25277;25278;25279 25439;25440 25439 2 DMIHIADTK GEFQSASEVDFYIDKDMIHIADTKVARRYG DFYIDKDMIHIADTKVARRYGDFFIRQIHK K D M T K V 1 0 0 2 0 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 0 0 9 0 1042.5117 B0QY89;Q9Y262;B0QY90;H0Y7E6 B0QY89 569 577 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.058746 43.083 By MS/MS 1 1.2497 1.0628 NaN 1 Median NaN NaN NaN 0 0 Median 1.2497 1.0628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4653700 2185700 2468000 0 0 0 4653700 2185700 2468000 0 0 0 0 0 0 0 0 0 0 0 0 4955 554 5157 25280 25441 25441 1 DMILQFISR VPVGDQPPDIEYQIKDMILQFISRESSLIL IEYQIKDMILQFISRESSLILAVTPANMDL K D M S R E 0 1 0 1 0 1 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 0 9 0 1121.5903 P50570 P50570 158 166 DNM2 Dynamin-2 yes yes 2 0.038148 34.186 By matching By matching By MS/MS By matching 2 2 1 2 1.0694 0.9996 19.553 7 Median 0.80323 0.80724 30.226 2 0 Median 1.0558 0.92443 19.434 2 0 Median 1.0739 1.1491 NaN 1 0 Median 1.1187 0.95323 11.958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7358400 3565900 3792500 817920 433090 384820 2127100 1082100 1045000 4196200 1959400 2236800 217230 91329 125900 0 0 0 0 0 0 4956 2417 5158 25281;25282;25283;25284;25285;25286;25287 25442 25442 1 DMLEAGILDTYLGK KNVGLDIEAEVPAVKDMLEAGILDTYLGKY KDMLEAGILDTYLGKYWAIKLATNAAVTVL K D M G K Y 1 0 0 2 0 0 1 2 0 1 3 1 1 0 0 0 1 0 1 0 0 0 14 0 1537.7698 P50990;H7C2U0 P50990 491 504 CCT8 T-complex protein 1 subunit theta yes no 2 4.7613E-06 94.616 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.2712 1.1003 12.254 8 Median 1.2147 1.1484 28.774 2 0 Median 1.2561 1.0729 7.4132 3 0 Median 1.1759 1.1823 NaN 1 0 Median 1.2864 1.1283 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3013 1.0661 NaN 1 0 Median 51817000 22721000 29096000 5401100 1715600 3685500 40981000 18671000 22310000 4836100 2071200 2764900 373810 168540 205270 0 0 0 224820 94983 129840 4957 2423 5159 25288;25289;25290;25291;25292;25293;25294;25295;25296 25443;25444;25445;25446;25447;25448;25449;25450;25451;25452 25450 10 DMLLANK NVGFVFTKEDLTEIRDMLLANKVPAAARAG KEDLTEIRDMLLANKVPAAARAGAIAPCEV R D M N K V 1 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 803.42112 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4;F8VS58;F8VZS0 P05388 100 106 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.021008 59.641 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0668 0.89853 12.013 4 Median NaN NaN NaN 0 0 Median 1.102 0.92679 NaN 1 0 Median 0.76133 0.72778 NaN 1 0 Median 1.0327 0.87113 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1658 0.94932 NaN 1 0 Median 18989000 9451100 9537500 0 0 0 8764900 4277500 4487400 2874800 1384100 1490600 2361700 1093700 1268000 0 0 0 4987200 2695800 2291400 4958 1865 5160 25297;25298;25299;25300 25453;25454;25455 25454 3 DMLLANKVPAAAR NVGFVFTKEDLTEIRDMLLANKVPAAARAG IRDMLLANKVPAAARAGAIAPCEVTVPAQN R D M A R A 4 1 1 1 0 0 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 13 1 1368.7548 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4 P05388 100 112 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 2.964E-06 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.98127 0.89784 14.854 8 Median 0.88513 0.89784 0.21399 2 0 Median 0.98127 0.86937 0.60612 2 0 Median NaN NaN NaN 0 0 Median 0.98893 0.93327 13.658 2 0 Median 1.1425 1.2368 NaN 1 1 Median 1.3073 1.1781 NaN 1 0 Median 125440000 61800000 63636000 80504000 40237000 40267000 34002000 16443000 17559000 0 0 0 5214600 2550700 2663900 3748600 1821900 1926700 1966000 746560 1219400 4959 1865 5161 25301;25302;25303;25304;25305;25306;25307;25308 25456;25457;25458;25459;25460;25461;25462;25463;25464;25465;25466;25467;25468;25469;25470 25460 15 DMLLANPHELSLLK ITSSPQGLDNPALLRDMLLANPHELSLLKE RDMLLANPHELSLLKERNPPLAEALLSGDL R D M L K E 1 0 1 1 0 0 1 0 1 0 5 1 1 0 1 1 0 0 0 0 0 0 14 0 1592.8596 Q5TDH0;H0YII4;H0YI90 Q5TDH0 140 153 DDI2 Protein DDI1 homolog 2 yes no 2 0.00082876 58.978 By MS/MS 1 0.64519 0.55247 NaN 1 Median NaN NaN NaN 0 0 Median 0.64519 0.55247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2590500 1492200 1098300 0 0 0 2590500 1492200 1098300 0 0 0 0 0 0 0 0 0 0 0 0 4960 3103 5162 25309 25471 25471 1 DMLLEVK HRQIEETLAHFHLTKDMLLEVKKRMRAEME LAHFHLTKDMLLEVKKRMRAEMELGLRKQT K D M V K K 0 0 0 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 7 0 846.45209 P19367 P19367 482 488 HK1 Hexokinase-1 yes yes 2 0.043995 43.124 By MS/MS By matching 2 3 1.5183 1.3299 19.385 5 Median 1.0193 1.0119 2.4209 2 0 Median 1.5497 1.3353 9.6072 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13357000 5426600 7930500 4705900 2178200 2527700 8651200 3248400 5402800 0 0 0 0 0 0 0 0 0 0 0 0 4961 2064 5163 25310;25311;25312;25313;25314 25472;25473 25472 2 DMLQAASHYR IEWAEVVINVNNILKDMLQAASHYRQNRNS NNILKDMLQAASHYRQNRNSLYRREESLEK K D M Y R Q 2 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 10 0 1190.5502 Q8WUM0 Q8WUM0 734 743 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 0.00027373 126.41 By MS/MS By MS/MS By matching 2 2 1 1.1574 1.1713 13.051 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0657 1.1713 NaN 1 0 Median 1.3972 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1574 0.94079 NaN 1 0 Median 50120000 19716000 30405000 0 0 0 0 0 0 41754000 16981000 24772000 5965900 1718100 4247800 0 0 0 2400600 1016200 1384400 4962 3492 5164 25315;25316;25317;25318;25319 25474;25475;25476;25477 25476 4 DMLTQTYDLIER VISKTVPPVDIVFERDMLTQTYDLIERRGT FERDMLTQTYDLIERRGTKGISQAEIRVAM R D M E R R 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 0 2 0 1 0 0 0 12 0 1496.7181 Q12789 Q12789 367 378 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00028532 98.943 By MS/MS By MS/MS 1 3 0.9701 1.05 4.9041 4 Median NaN NaN NaN 0 0 Median 1.333 1.1332 NaN 1 0 Median 0.93822 1.0293 2.7494 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17848000 8628500 9219200 0 0 0 3395100 1246500 2148600 14453000 7382000 7070600 0 0 0 0 0 0 0 0 0 4963 2758 5165 25320;25321;25322;25323 25478;25479;25480 25479 3 DMNHTNSYGIIR ADYMTAKNNVVINYKDMNHTNSYGIIRGLQ NYKDMNHTNSYGIIRGLQFASFIVQYYGLV K D M I R G 0 1 2 1 0 0 0 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 12 0 1419.6565 Q6P2Q9;I3L0J9 Q6P2Q9 1021 1032 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 2.0315E-05 124.21 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.287 1.165 13.214 6 Median 1.247 1.2253 NaN 1 0 Median 1.5619 1.3209 NaN 1 0 Median 0.92764 1.0111 NaN 1 0 Median 1.3322 1.165 0.39829 2 0 Median 0.88431 0.92019 NaN 1 0 Median NaN NaN NaN 0 0 Median 35209000 17262000 17947000 3112900 1419400 1693500 2636900 1260800 1376100 18951000 9281000 9670300 4368600 1790300 2578300 6139700 3510700 2628900 0 0 0 4964 3157 5166 25324;25325;25326;25327;25328;25329 25481;25482;25483;25484 25481 4 DMNQVLDAYENK RPHHFLRRGIFFSHRDMNQVLDAYENKKPF SHRDMNQVLDAYENKKPFYLYTGRGPSSEA R D M N K K 1 0 2 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 12 0 1438.6398 P23381;G3V3Y5;G3V3H8;G3V277;G3V456;G3V5U1;G3V423 P23381 142 153 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 0.020655 32.523 By matching By MS/MS By matching 1 1 1 1.2132 1.1707 6.1476 3 Median NaN NaN NaN 0 0 Median 1.2132 1.0645 NaN 1 0 Median 1.1521 1.1707 NaN 1 0 Median 1.3599 1.1944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5011700 2528200 2483500 0 0 0 913040 420310 492730 3761300 1919800 1841400 337340 188020 149320 0 0 0 0 0 0 4965 2111 5167 25330;25331;25332 25485 25485 1 DMPYQPFSK NPSGWGPCAVPEQFRDMPYQPFSKGDRLGK VPEQFRDMPYQPFSKGDRLGKVADWTGATY R D M S K G 0 0 0 1 0 1 0 0 0 0 0 1 1 1 2 1 0 0 1 0 0 0 9 0 1111.5008 O15371;B0QYA5;B0QYA6;B0QYA8 O15371 27 35 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.044772 32.415 By MS/MS By matching 1 1 0.806 0.7307 2.4546 2 Median 0.75395 0.71813 NaN 1 0 Median 0.86163 0.74349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7860200 4401500 3458700 6586700 3808100 2778600 1273500 593390 680140 0 0 0 0 0 0 0 0 0 0 0 0 4966 1540 5168 25333;25334 25486 25486 1 DMQPSMESDMALVK KDMESPTKLDVTLAKDMQPSMESDMALVKD KDMQPSMESDMALVKDMELPTEKEVALVKD K D M V K D 1 0 0 2 0 1 1 0 0 0 1 1 3 0 1 2 0 0 0 1 0 0 14 0 1580.6885 E7EVA0;P27816;H7C456 E7EVA0 308 321 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.010499 33.875 By matching By MS/MS By matching 2 1 2 0.97864 0.91542 29.298 5 Median 0.82778 0.8123 18.093 2 0 Median NaN NaN NaN 0 0 Median 1.4663 1.5769 NaN 1 0 Median 1.0339 0.90055 2.3174 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14253000 6876300 7376400 6029000 3329700 2699300 0 0 0 6872000 2907800 3964200 1351700 638730 713000 0 0 0 0 0 0 4967 895 5169 25335;25336;25337;25338;25339 25487;25488 25488 2 DMSALVAAR RGAQYQPILRDHICKDMSALVAARMRHIPL RDHICKDMSALVAARMRHIPLAPGSDWRDL K D M A R M 3 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 9 0 932.47495 P26358;K7ENW7 P26358 1416 1424 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00064234 107.59 By MS/MS By MS/MS 1 3 0.88426 0.86583 137.65 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84495 0.92299 NaN 1 0 Median 0.92539 0.8122 163.05 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13608000 6532300 7076000 0 0 0 0 0 0 10231000 5188100 5043200 3377100 1344300 2032800 0 0 0 0 0 0 4968 2142 5170 25340;25341;25342;25343 25489;25490;25491 25489 3 DMSGHYQNALYLGDVSER LEKLRKMMKIAEIRKDMSGHYQNALYLGDV GHYQNALYLGDVSERVRILKNCGQKSLAYL K D M E R V 1 1 1 2 0 1 1 2 1 0 2 0 1 0 0 2 0 0 2 1 0 0 18 0 2053.9164 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 728 745 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 9.2613E-14 103.87 By MS/MS By matching 4 1 1.0133 0.98152 15.161 5 Median 1.0128 1.1054 17.195 4 2 Linear 1.1245 0.98152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48860000 22224000 26637000 47696000 21681000 26015000 1164000 542220 621770 0 0 0 0 0 0 0 0 0 0 0 0 4969 2473 5171 25344;25345;25346;25347;25348 25492;25493;25494 25492 2 DMSIIQWK SFTHNDSHLISTGGKDMSIIQWKLVEKLSL LISTGGKDMSIIQWKLVEKLSLPQNETVAD K D M W K L 0 0 0 1 0 1 0 0 0 2 0 1 1 0 0 1 0 1 0 0 0 0 8 0 1019.511 Q9HC35;B5MBZ0 Q9HC35 856 863 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 0.008475 62.714 By MS/MS By matching By matching By matching 2 1 1 2 1.2646 1.1099 14.968 6 Median 1.0192 0.98569 1.813 2 0 Median 1.3978 1.2344 NaN 1 0 Median 1.3965 1.4613 NaN 1 0 Median 1.2646 1.1099 0.32513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6409500 2838000 3571500 5037700 2261100 2776600 698460 291540 406920 487350 192390 294960 185950 92915 93036 0 0 0 0 0 0 4970 4024 5172 25349;25350;25351;25352;25353;25354 25495;25496 25496 2 DMSISNTTMDEFR ECGCQFTSKLEGMFRDMSISNTTMDEFRQH FRDMSISNTTMDEFRQHLQATGVSLGGVDL R D M F R Q 0 1 1 2 0 0 1 0 0 1 0 0 2 1 0 2 2 0 0 0 0 0 13 0 1545.6439 Q13618;A0A087WTG3 Q13618 476 488 CUL3 Cullin-3 yes no 2 6.9595E-07 118.4 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.1428 1.0374 10.01 5 Median 1.0246 0.9852 NaN 1 0 Median 1.1494 1.0374 NaN 1 0 Median 1.1428 1.226 NaN 1 0 Median 1.3378 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1417 0.96491 NaN 1 0 Median 7879500 3818500 4061000 4333400 2215200 2118200 326420 150580 175840 2762600 1243300 1519300 387870 169750 218110 0 0 0 69172 39566 29606 4971 2831 5173 25355;25356;25357;25358;25359 25497;25498;25499;25500 25499 4 DMSMLEER HGDQVFKLIGNLSEKDMSMLEERIKRSAKR IGNLSEKDMSMLEERIKRSAKRPSAAPIKQ K D M E R I 0 1 0 1 0 0 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 8 0 1009.4209 Q14008 Q14008 1412 1419 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0059586 73.26 By matching By matching By MS/MS 1 1 1 1.1979 1.1785 9.257 3 Median NaN NaN NaN 0 0 Median 1.3362 1.1785 NaN 1 0 Median 1.1377 1.2637 NaN 1 0 Median 1.1979 1.0519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5681200 2734000 2947100 0 0 0 473140 184140 289000 2942500 1320800 1621700 2265600 1229200 1036400 0 0 0 0 0 0 4972 2850 5174 25360;25361;25362 25501;25502 25501 2 DMSPLSETEMALGK KDVAPSTVKEVGLLKDMSPLSETEMALGKD KDMSPLSETEMALGKDVTPPPETEVVLIKN K D M G K D 1 0 0 1 0 0 2 1 0 0 2 1 2 0 1 2 1 0 0 0 0 0 14 0 1507.6898 E7EVA0;P27816 E7EVA0 522 535 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00084507 58.37 By matching By MS/MS 1 1 1.0783 1.1199 42.926 2 Median 0.8302 0.8267 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4005 1.517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4251800 1757300 2494500 855950 392250 463710 0 0 0 3395800 1365000 2030800 0 0 0 0 0 0 0 0 0 4973 895 5175 25363;25364 25503;25504 25504 2 DMSTWVFGAER IDWTDDSRCFVVGSKDMSTWVFGAERWDNL VGSKDMSTWVFGAERWDNLIYYALGGHKDA K D M E R W 1 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 1 1 0 1 0 0 11 0 1297.5761 Q15269;A0A0B4J2E5 Q15269 165 175 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.015509 36.693 By MS/MS By matching 2 1 1.1991 1.3119 5.8864 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.181 1.2932 2.0294 2 0 Median 1.7318 1.4276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2222900 980600 1242300 0 0 0 0 0 0 2106000 924560 1181400 116910 56035 60880 0 0 0 0 0 0 4974 223 5176 25365;25366;25367 25505;25506 25506 2 DMSVVEGGLR AGPPTLDPVNDLQLKDMSVVEGGLRARKLE DLQLKDMSVVEGGLRARKLEELIQGAQCVH K D M L R A 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 2 0 0 10 0 1061.5175 Q15477;H7C5N0 Q15477 992 1001 SKIV2L Helicase SKI2W yes no 2 0.0023475 60.59 By matching By MS/MS By matching 1 1 1 1.0151 1.0107 60.982 3 Median 1.0151 1.0107 NaN 1 0 Median 1.6301 1.4156 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52725 0.43343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3458600 1418100 2040600 1645300 773700 871620 1274300 390870 883430 0 0 0 539010 253480 285530 0 0 0 0 0 0 4975 2955 5177 25368;25369;25370 25507 25507 1 DMTLPPETNVILTK EKVALSSETEVALARDMTLPPETNVILTKD RDMTLPPETNVILTKDKALPLEAEVAPVKD R D M T K D 0 0 1 1 0 0 1 0 0 1 2 1 1 0 2 0 3 0 0 1 0 0 14 0 1570.8276 E7EVA0;P27816 E7EVA0 466 479 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 5.4254E-05 84.658 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 3 1 1 0.86083 0.76244 21.258 10 Median 0.73586 0.71141 2.0943 2 1 Median 0.91326 0.80364 NaN 1 0 Median 1.0189 1.101 18.892 2 0 Median 0.84328 0.72336 9.716 3 0 Median 1.0661 1.1194 NaN 1 0 Median 0.80736 0.69302 NaN 1 0 Median 66937000 33581000 33356000 25595000 14195000 11400000 1570800 786440 784330 28842000 12832000 16009000 6681400 3563100 3118300 4079500 2126800 1952600 169050 76986 92062 4976 895 5178 25371;25372;25373;25374;25375;25376;25377;25378;25379;25380 25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518 25512 11 DMTMFVTASK VKEHSRQINDIQLSRDMTMFVTASKDNTAK IQLSRDMTMFVTASKDNTAKLFDSTTLEHQ R D M S K D 1 0 0 1 0 0 0 0 0 0 0 1 2 1 0 1 2 0 0 1 0 0 10 0 1129.5148 Q13347 Q13347 199 208 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2 0.00041856 75.378 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 1 1.1855 1.0796 14.558 7 Median 1.2278 1.1142 5.0389 3 0 Median 1.1855 0.99627 NaN 1 0 Median 1.0682 1.0218 NaN 1 0 Median 1.068 0.91117 NaN 1 0 Median 1.4514 1.4321 NaN 1 0 Median NaN NaN NaN 0 0 Median 62647000 27345000 35302000 50319000 21697000 28622000 7271800 3192700 4079100 3516900 1719400 1797500 348840 168260 180580 1190600 567680 622960 0 0 0 4977 2806 5179 25381;25382;25383;25384;25385;25386;25387 25519;25520;25521;25522;25523;25524 25520 6 DMTSEQLDDILK PRDAKACVVHGSDLKDMTSEQLDDILKYHT DLKDMTSEQLDDILKYHTEIVFARTSPQQK K D M L K Y 0 0 0 3 0 1 1 0 0 1 2 1 1 0 0 1 1 0 0 0 0 0 12 0 1406.6599 P05023 P05023 672 683 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 1.5559E-07 125.97 By MS/MS By MS/MS By matching 3 4 1 1.1711 1.0978 11.639 8 Median 1.2843 1.2859 4.63 3 1 Plateau 1.131 0.992 2.2817 4 0 Median 1.194 1.2467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56180000 25031000 31148000 18910000 7975200 10935000 36709000 16817000 19891000 561050 238550 322500 0 0 0 0 0 0 0 0 0 4978 1857 5180 25388;25389;25390;25391;25392;25393;25394;25395 25525;25526;25527;25528;25529;25530;25531 25526 7 DMVGIAQTGSGK TPIQCQGFPLALSGRDMVGIAQTGSGKTLA SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ R D M G K T 1 0 0 1 0 1 0 3 0 1 0 1 1 0 0 1 1 0 0 1 0 0 12 0 1162.5652 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 210 221 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 4.5969E-06 145.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 3 1 4 0.99963 0.88637 27.204 16 Median 0.92441 0.88461 NaN 1 0 Median 0.95376 0.81904 16.081 4 4 Median 0.92949 0.96993 30.394 3 0 Median 1.0253 0.88815 48.73 3 2 Median 1.0172 1.0396 NaN 1 0 Median 1.2098 0.99479 17.952 4 2 Median 159550000 80277000 79277000 3796000 1833300 1962700 23967000 12964000 11004000 96964000 49106000 47858000 8898400 4469900 4428500 10986000 5660100 5326400 14942000 6243900 8698100 4979 343 5181;5182 25396;25397;25398;25399;25400;25401;25402;25403;25404;25405;25406;25407;25408;25409;25410;25411 25532;25533;25534;25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545;25546;25547 25536 163 16 DMVGQVAITR TGKVYYDLTRERKARDMVGQVAITRIEQLS ERKARDMVGQVAITRIEQLSPFPFDLLLKE R D M T R I 1 1 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 2 0 0 10 0 1088.5648 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 931 940 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.00063896 72.643 By MS/MS By MS/MS 1 1 1.1055 0.99643 5.8422 2 Median 0.99222 0.95611 NaN 1 0 Median 1.2316 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15965000 7588000 8376900 10587000 5219100 5367800 5377900 2368800 3009100 0 0 0 0 0 0 0 0 0 0 0 0 4980 912 5183 25412;25413 25548;25549;25550 25550 3 DMVVDIQR DLAVPFCVNFRLKGKDMVVDIQRRHLRVGL NFRLKGKDMVVDIQRRHLRVGLKGQPAIID K D M Q R R 0 1 0 2 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 2 0 0 8 0 974.48552 Q9Y266 Q9Y266 197 204 NUDC Nuclear migration protein nudC yes yes 2 1.2061E-05 117.93 By MS/MS By MS/MS By matching 1 2 1 1.0394 0.94513 28.392 4 Median 1.3577 1.36 NaN 1 1 Median 0.9588 0.83642 27.387 2 0 Median NaN NaN NaN 0 0 Median 0.92698 0.87993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63698000 28469000 35229000 33396000 13914000 19482000 29082000 14081000 15001000 0 0 0 1220200 474760 745480 0 0 0 0 0 0 4981 4376 5184 25414;25415;25416;25417 25551;25552;25553 25551 3 DMVVNLFHELEK EQEIIQNDRQLQYERDMVVNLFHELEKMTE YERDMVVNLFHELEKMTEVLDHEERVISNL R D M E K M 0 0 1 1 0 0 2 0 1 0 2 1 1 1 0 0 0 0 0 2 0 0 12 0 1472.7334 Q9UBB9 Q9UBB9 347 358 TFIP11 Tuftelin-interacting protein 11 yes yes 2 0.011322 74.162 By MS/MS 1 1.2497 1.0918 NaN 1 Median NaN NaN NaN 0 0 Median 1.2497 1.0918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6573100 2854400 3718700 0 0 0 6573100 2854400 3718700 0 0 0 0 0 0 0 0 0 0 0 0 4982 4235 5185 25418 25554 25554 0 DMYEQFQNIMK EALIEKLKHGQFTLRDMYEQFQNIMKMGPF FTLRDMYEQFQNIMKMGPFSQILGMIPGFG R D M M K M 0 0 1 1 0 2 1 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 11 0 1445.6319 G3V4F7;P61011 G3V4F7 267 277 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.00016812 80.165 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.105 1.0937 39.363 5 Median 0.99215 0.94511 NaN 1 0 Median 1.105 0.97979 NaN 1 0 Median 1.0625 1.0937 NaN 1 0 Median 1.787 1.533 NaN 1 0 Median 2.4832 2.4103 NaN 1 0 Median NaN NaN NaN 0 0 Median 11353000 4397200 6956200 3563300 1466900 2096500 588230 260640 327590 1957000 921210 1035800 4972500 1628300 3344200 272270 120110 152160 0 0 0 4983 1116 5186 25419;25420;25421;25422;25423 25555;25556;25557 25557 3 DMYNIIR LKKGWKWKDEDISQKDMYNIIRIHNQNNEQ KDEDISQKDMYNIIRIHNQNNEQAWKEILK K D M I R I 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 0 7 0 923.45349 P53701 P53701 146 152 HCCS Cytochrome c-type heme lyase yes yes 2 0.02182 58.661 By MS/MS By matching By matching 1 1 1 1.2997 1.2501 6.0672 3 Plateau 1.2997 1.2501 NaN 1 0 Median 1.46 1.2488 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2746 1.1248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3571200 1550300 2020900 2790900 1213900 1577000 632270 265320 366960 0 0 0 148060 71063 76994 0 0 0 0 0 0 4984 2474 5187 25424;25425;25426 25558;25559 25559 2 DMYSFLQDMGLK INGIMYFPVSNTNEKDMYSFLQDMGLKAFT NEKDMYSFLQDMGLKAFTNSKIHKPKICPQ K D M L K A 0 0 0 2 0 1 0 1 0 0 2 1 2 1 0 1 0 0 1 0 0 0 12 0 1446.6523 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 667 678 yes yes 2 0.029201 28.727 By MS/MS 1 0.086028 0.085484 NaN 1 Median 0.086028 0.085484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 777960 729160 48798 777960 729160 48798 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 4985 734 5188 25427 25560 25560 1 DNALLAQLIQDK TLKEYPAVRYRGEYKDNALLAQLIQDKLDA EYKDNALLAQLIQDKLDAYKADDPTMGEGP K D N D K L 2 0 1 2 0 2 0 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1340.73 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;A0A1B0GW76 A0A1B0GWF2 197 208 STXBP1 Syntaxin-binding protein 1 yes no 2 0.00035872 81.017 By MS/MS By matching 1 1 1.2502 1.0714 10.911 2 Median NaN NaN NaN 0 0 Median 1.1503 0.99185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3589 1.1573 NaN 1 0 Median 2710200 1167400 1542900 0 0 0 2596700 1121500 1475200 0 0 0 0 0 0 0 0 0 113560 45881 67676 4986 271 5189 25428;25429 25561;25562 25562 2 DNALLSAIEESR PVKDTDIQGFLKNEKDNALLSAIEESRKRT NEKDNALLSAIEESRKRTFGMAEEYHRESM K D N S R K 2 1 1 1 0 0 2 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 107 118 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0012378 55.401 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 4 1 1 1 1.0218 1.0372 26.2 11 Median 0.84879 0.84401 20.383 2 0 Median 1.2104 1.0498 3.2525 2 0 Median 1.013 1.0877 6.5492 4 2 Median 1.3307 1.1466 NaN 1 0 Median 0.72336 0.77304 NaN 1 0 Median 2.3511 2.0225 NaN 1 0 Median 25889000 12436000 13453000 4062900 1867400 2195500 2817200 1175200 1642000 14645000 7496800 7148500 2396100 1010700 1385500 1286200 680990 605220 680990 204630 476350 4987 3356 5190 25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440 25563;25564;25565;25566;25567;25568;25569 25566 7 DNAMLEYLK DRIQVWHAEHRGMLKDNAMLEYLKIAQDLE HRGMLKDNAMLEYLKIAQDLEMYGINYFEI K D N L K I 1 0 1 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 9 0 1095.527 P15311;E7EQR4 P15311 185 193 EZR Ezrin yes no 2 0.0090052 50.703 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 4 1 1.2283 1.1085 11.267 10 Median 1.1112 1.032 NaN 1 0 Median 1.1411 0.98458 6.37 2 0 Median 1.2365 1.2729 8.1192 2 0 Median 1.2781 1.1085 6.087 4 0 Median NaN NaN NaN 0 0 Median 1.4703 1.285 NaN 1 0 Median 52168000 23563000 28605000 6154200 3089900 3064200 8626700 4094700 4532000 31760000 13923000 17837000 5519100 2405300 3113800 0 0 0 107620 49471 58144 4988 879 5191;5192 25441;25442;25443;25444;25445;25446;25447;25448;25449;25450 25570;25571;25572;25573;25574 25573 318 5 DNDLISLPK PDIGKLTKLQILSLRDNDLISLPKEIGELT QILSLRDNDLISLPKEIGELTQLKELHIQG R D N P K E 0 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 9 0 1013.5393 Q15404 Q15404 166 174 RSU1 Ras suppressor protein 1 yes yes 2 0.016818 42.287 By MS/MS By matching 2 2 0.48237 0.42951 32.725 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46482 0.44265 39.677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49756 0.41584 39.994 2 0 Median 10633000 6391600 4241400 0 0 0 0 0 0 9407700 5564000 3843800 0 0 0 0 0 0 1225200 827620 397580 4989 2949 5193 25451;25452;25453;25454 25575;25576;25577 25575 3 DNDSLAAR EPNSDLQGVNVISVKDNDSLAARLAVEMKT VNVISVKDNDSLAARLAVEMKTDLLIVLSD K D N A R L 2 1 1 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 8 0 860.39881 P54886 P54886 245 252 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.021829 65.676 By MS/MS 1 1.3502 1.4263 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3502 1.4263 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3524300 1064500 2459700 0 0 0 0 0 0 3524300 1064500 2459700 0 0 0 0 0 0 0 0 0 4990 2488 5194 25455 25578 25578 1 DNEEETTDDPR CLEHYEFLLDKAAQRDNEEETTDDPRKLKP AAQRDNEEETTDDPRKLKPGEIDPNPETKP R D N P R K 0 1 1 3 0 0 3 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 11 0 1319.5113 Q99459 Q99459 111 121 CDC5L Cell division cycle 5-like protein yes yes 2 0.033498 30.254 By MS/MS By matching 1 1 0.70672 0.68877 1.1276 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65062 0.69428 NaN 1 0 Median 0.76765 0.6833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1195600 654260 541380 0 0 0 0 0 0 1060800 587800 473020 134820 66453 68365 0 0 0 0 0 0 4991 3745 5195 25456;25457 25579 25579 1 DNFDEMDTSR REAFLEQFRKEDMFKDNFDEMDTSREIVQQ EDMFKDNFDEMDTSREIVQQLIDEYHAATR K D N S R E 0 1 1 3 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1228.4666 P23258 P23258 416 425 TUBG1 Tubulin gamma-1 chain yes yes 2 0.0077144 66.435 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4992 2108 5196 25458 25580 25580 1 DNFTLIPEGTNGTEER SAHCTFNTAQKAVGKDNFTLIPEGTNGTEE NFTLIPEGTNGTEERMSVIWDKAVVTGKMD K D N E R M 0 1 2 1 0 0 3 2 0 1 1 0 0 1 1 0 3 0 0 0 0 0 16 0 1791.8275 Q16555;A0A1C7CYX9 Q16555 346 361 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.014239 42.809 By MS/MS By MS/MS 1 1 0.86148 0.90482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86148 0.90482 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2417600 1532800 884810 0 0 0 0 0 0 2417600 1532800 884810 0 0 0 0 0 0 0 0 0 4993 328 5197 25459;25460 25581;25582 25582 2 DNGDGTHTVHYTPATDGPYTVAVK AVLGPTGVAEPVEVRDNGDGTHTVHYTPAT HYTPATDGPYTVAVKYADQEVPRSPFKIKV R D N V K Y 2 0 1 3 0 0 0 3 2 0 0 1 0 0 2 0 5 0 2 3 0 0 24 0 2515.1615 Q14315 Q14315 1495 1518 FLNC Filamin-C yes yes 3;4 5.6351E-19 85.062 By MS/MS By MS/MS By matching By matching 4 4 1 2 0.87916 0.77555 22.589 11 Median 0.98205 0.98243 6.0967 4 0 Median 0.80399 0.71157 7.9747 4 0 Median 1.1116 1.2386 NaN 1 0 Median 0.69388 0.65527 1.87 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84180000 43930000 40250000 36129000 18025000 18104000 43489000 23563000 19926000 2398400 1065000 1333400 2164300 1277300 886960 0 0 0 0 0 0 4994 2871 5198 25461;25462;25463;25464;25465;25466;25467;25468;25469;25470;25471 25583;25584;25585;25586;25587;25588;25589;25590 25588 8 DNGIRPSSLEQMAK DVVPFKVPGKDTVTKDNGIRPSSLEQMAKL KDNGIRPSSLEQMAKLKPAFIKPYGTVTAA K D N A K L 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 2 0 0 0 0 0 0 14 1 1544.7617 P55084;F5GZQ3;B5MD38 P55084 278 291 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2;3 0.0019 54.776 By MS/MS By MS/MS By matching 2 2 2 1.0256 1.0241 27.42 6 Median 1.0256 1.0241 5.8233 2 0 Median NaN NaN NaN 0 0 Median 0.80683 0.81692 9.6584 2 0 Median 1.5333 1.4719 10.163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28706000 13333000 15374000 10057000 5087600 4969200 0 0 0 11119000 5275700 5843700 7530200 2969600 4560600 0 0 0 0 0 0 4995 2496 5199 25472;25473;25474;25475;25476;25477 25591;25592 25592 2 DNGLLAKPTHGDIIR ETKDWDAWKVCLRLRDNGLLAKPTHGDIIR DNGLLAKPTHGDIIRFAPPLVIKEDELRES R D N I R F 1 1 1 2 0 0 0 2 1 2 2 1 0 0 1 0 1 0 0 0 0 0 15 1 1618.8791 P04181 P04181 399 413 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3 8.5832E-05 70.038 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.055 1.0535 29.175 7 Median 1.0235 1.0587 0.70181 2 0 Median 1.0526 0.96212 43.315 3 0 Median 1.1173 1.2696 NaN 1 0 Median 1.1276 0.99128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40596000 20677000 19919000 22287000 12062000 10225000 12252000 5583200 6669200 5121900 2609800 2512200 934040 422050 511990 0 0 0 0 0 0 4996 1846 5200 25478;25479;25480;25481;25482;25483;25484 25593;25594;25595;25596;25597;25598 25598 6 DNHLLGTFDLTGIPPAPR TVTIKVYEGERPLTKDNHLLGTFDLTGIPP LLGTFDLTGIPPAPRGVPQIEVTFEIDVNG K D N P R G 1 1 1 2 0 0 0 2 1 1 3 0 0 1 3 0 2 0 0 0 0 0 18 0 1933.0058 P11021 P11021 475 492 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 9.2522E-15 136.27 By MS/MS By MS/MS By matching By matching 4 3 1 2 0.68111 0.62844 17.501 10 Median 0.58575 0.56744 16.311 4 0 Median 0.70436 0.60912 8.4016 3 0 Median 0.60421 0.62316 NaN 1 0 Median 0.90218 0.76237 22.71 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52856000 30747000 22109000 27108000 15925000 11183000 18980000 10344000 8636600 6583200 4373100 2210000 184770 104910 79853 0 0 0 0 0 0 4997 1948 5201 25485;25486;25487;25488;25489;25490;25491;25492;25493;25494 25599;25600;25601;25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612 25605 14 DNHSPEIQHGSLLALGFTVGR NELKSMIEQLIKTTKDNHSPEIQHGSLLAL IQHGSLLALGFTVGRYLAKKKMRMSEQQDL K D N G R Y 1 1 1 1 0 1 1 3 2 1 3 0 0 1 1 2 1 0 0 1 0 0 21 0 2247.1396 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 742 762 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3;4 8.0623E-12 64.723 By MS/MS By matching 2 2 0.88971 0.7978 13.539 4 Median 0.85168 0.83959 19.54 2 0 Median 0.89663 0.7978 11.919 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6114000 3418000 2696000 5812800 3270500 2542300 301160 147540 153620 0 0 0 0 0 0 0 0 0 0 0 0 4998 3116 5202 25495;25496;25497;25498 25613;25614 25614 2 DNHVVAAGGVEK AASHRYDLGGLVMVKDNHVVAAGGVEKAVR MVKDNHVVAAGGVEKAVRAARQAADFTLKV K D N E K A 2 0 1 1 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 3 0 0 12 0 1194.5993 Q15274 Q15274 172 183 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 2 0.00062355 66.056 By matching By MS/MS 1 1 1.2338 1.1301 44.582 2 Median 0.83281 0.82456 NaN 1 0 Median 1.8278 1.5489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1738500 698310 1040200 735260 355200 380060 1003200 343110 660100 0 0 0 0 0 0 0 0 0 0 0 0 4999 2936 5203 25499;25500 25615;25616 25615 2 DNINIEEAAR CKEHGFAGWFETSAKDNINIEEAARFLVEK ETSAKDNINIEEAARFLVEKILVNHQSFPN K D N A R F 2 1 2 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 10 0 1143.552 Q13637 Q13637 177 186 RAB32 Ras-related protein Rab-32 yes yes 2 0.0025402 73.985 By MS/MS 1 1.2736 1.08 NaN 1 Median NaN NaN NaN 0 0 Median 1.2736 1.08 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2434400 1065700 1368800 0 0 0 2434400 1065700 1368800 0 0 0 0 0 0 0 0 0 0 0 0 5000 2833 5204 25501 25617 25617 1 DNIQAMVIVPTR GAYLIPLLERLDLKKDNIQAMVIVPTRELA LKKDNIQAMVIVPTRELALQVSQICIQVSK K D N T R E 1 1 1 1 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 12 0 1355.7231 P26196;Q8IV96 P26196 163 174 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 2 0.00027328 99.283 By MS/MS By MS/MS By matching 2 2 1 1.0201 1.0046 98.911 5 Plateau 0.35823 0.33581 156.26 2 1 Median NaN NaN NaN 0 0 Median 0.65878 0.67074 55.827 2 1 Median 0.22008 0.18859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69931000 51373000 18558000 50501000 38022000 12479000 0 0 0 16395000 10862000 5532500 3034500 2488400 546180 0 0 0 0 0 0 5001 2140 5205;5206 25502;25503;25504;25505;25506 25618;25619;25620;25621 25618 903 4 DNIQGITK GLGKGGAKRHRKVLRDNIQGITKPAIRRLA RHRKVLRDNIQGITKPAIRRLARRGGVKRI R D N T K P 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 887.47125 P62805 P62805 25 32 HIST1H4A Histone H4 yes yes 2 0.0027479 105.25 By matching By matching By MS/MS By MS/MS 2 1 2 6 1.2003 1.0366 19.465 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91813 0.94969 15.019 2 0 Median 1.796 1.5131 NaN 1 0 Median 0.90524 0.96862 9.5945 2 0 Median 1.2935 1.0445 18.997 6 0 Median 135620000 58024000 77596000 0 0 0 0 0 0 2430400 1271900 1158500 115750 35976 79773 19020000 9256200 9763800 114050000 47460000 66594000 5002 2597 5207 25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517 25622;25623;25624;25625;25626;25627;25628;25629;25630 25625 9 DNIQGITKPAIR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA VLRDNIQGITKPAIRRLARRGGVKRISGLI R D N I R R 1 1 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 12 1 1324.7463 P62805 P62805 25 36 HIST1H4A Histone H4 yes yes 2;3 3.8587E-30 214.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 10 9 17 32 24 1.0099 0.93097 17.838 93 Median 0.9236 0.90567 5.8805 5 2 Median 1.2344 1.0891 13.466 10 0 Median 0.77107 0.88338 23.975 9 2 Median 1.289 1.1116 22.589 17 0 Median 0.77679 0.89587 9.6647 29 4 Median 1.1649 0.9882 11.919 23 2 Median 36950000000 18250000000 18700000000 251410000 120030000 131380000 864420000 352470000 511950000 457970000 254400000 203570000 118840000 50997000 67842000 20681000000 11014000000 9667300000 14577000000 6458400000 8118300000 5003 2597 5208 25518;25519;25520;25521;25522;25523;25524;25525;25526;25527;25528;25529;25530;25531;25532;25533;25534;25535;25536;25537;25538;25539;25540;25541;25542;25543;25544;25545;25546;25547;25548;25549;25550;25551;25552;25553;25554;25555;25556;25557;25558;25559;25560;25561;25562;25563;25564;25565;25566;25567;25568;25569;25570;25571;25572;25573;25574;25575;25576;25577;25578;25579;25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592;25593;25594;25595;25596;25597;25598;25599;25600;25601;25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612;25613;25614;25615 25631;25632;25633;25634;25635;25636;25637;25638;25639;25640;25641;25642;25643;25644;25645;25646;25647;25648;25649;25650;25651;25652;25653;25654;25655;25656;25657;25658;25659;25660;25661;25662;25663;25664;25665;25666;25667;25668;25669;25670;25671;25672;25673;25674;25675;25676;25677;25678;25679;25680;25681;25682;25683;25684;25685;25686;25687;25688;25689;25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700;25701;25702;25703;25704;25705;25706;25707;25708;25709;25710;25711;25712;25713;25714;25715;25716;25717;25718;25719;25720;25721;25722;25723;25724;25725;25726;25727;25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743;25744;25745;25746;25747;25748;25749;25750;25751;25752;25753;25754;25755;25756;25757;25758;25759;25760;25761;25762;25763;25764;25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784;25785;25786;25787;25788;25789;25790;25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806;25807;25808;25809;25810;25811 25696 181 DNIQGITKPAIRR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA LRDNIQGITKPAIRRLARRGGVKRISGLIY R D N R R L 1 2 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 13 2 1480.8474 P62805 P62805 25 37 HIST1H4A Histone H4 yes yes 2;3 2.8402E-30 209.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 16 5 0.87475 0.98001 18.723 24 Median 0.87033 0.9823 NaN 1 0 Median 1.4105 1.4546 NaN 1 0 Median 0.94866 1.1082 NaN 1 0 Median 1.3921 1.207 NaN 1 0 Median 0.79059 0.91089 15.503 15 0 Median 1.2549 1.1495 6.2292 5 0 Median 3620700000 1964800000 1655900000 3763600 2201700 1562000 12820000 5493300 7327100 6067500 3115900 2951600 1060700 439460 621270 3563400000 1939100000 1624300000 33621000 14504000 19117000 5004 2597 5209 25616;25617;25618;25619;25620;25621;25622;25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638;25639;25640 25812;25813;25814;25815;25816;25817;25818;25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834;25835;25836;25837;25838;25839;25840;25841;25842;25843;25844;25845;25846;25847;25848;25849;25850 25834 39 DNLAEDIMR VDQLTNDKARVEVERDNLAEDIMRLREKLQ RVEVERDNLAEDIMRLREKLQEEMLQREEA R D N M R L 1 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1075.4968 P08670;B0YJC4 P08670 176 184 VIM Vimentin yes no 2 0.00065105 107.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 3 1 1.143 1.1061 20.035 12 Median 1.0424 1.0795 27.758 2 0 Median 1.896 1.6223 NaN 1 0 Median 1.0933 1.0772 6.8049 3 0 Plateau 1.2343 1.067 6.6683 2 0 Median 1.2053 1.2895 8.7256 3 0 Median 0.94922 0.76752 NaN 1 0 Median 90757000 41777000 48980000 15807000 7791800 8015200 1910400 771290 1139100 37940000 17565000 20376000 4850800 2173400 2677400 27376000 12025000 15351000 2872200 1450600 1421600 5005 1907 5210;5211 25641;25642;25643;25644;25645;25646;25647;25648;25649;25650;25651;25652 25851;25852;25853;25854;25855;25856;25857;25858;25859;25860;25861 25853 677 11 DNLAEELEGVAGR VDQRWREKHAAEVARDNLAEELEGVAGRCQ ARDNLAEELEGVAGRCQQLRLARERTTEEV R D N G R C 2 1 1 1 0 0 3 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 13 0 1371.663 P48681 P48681 82 94 NES Nestin yes yes 2 0.0033589 60.434 By MS/MS 1 0.52204 0.52361 NaN 1 Median 0.52204 0.52361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1107400 585440 522010 1107400 585440 522010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5006 2366 5212 25653 25862 25862 1 DNLEFFLAGIGR KPSCTIIPLMKKDHRDNLEFFLAGIGRLHL DHRDNLEFFLAGIGRLHLSGIDANPNALFP R D N G R L 1 1 1 1 0 0 1 2 0 1 2 0 0 2 0 0 0 0 0 0 0 0 12 0 1350.6932 P49327;A0A0U1RQF0 P49327 791 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.3218E-06 99.653 By MS/MS By MS/MS By matching 4 7 1 1.3472 1.1758 19.875 12 Median 1.0451 1.0197 23.307 4 0 Median 1.4394 1.2681 6.8404 7 0 Median NaN NaN NaN 0 0 Median 1.4985 1.3096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49833000 21275000 28559000 14449000 7000700 7448500 35341000 14258000 21083000 0 0 0 43396 16195 27201 0 0 0 0 0 0 5007 2377 5213 25654;25655;25656;25657;25658;25659;25660;25661;25662;25663;25664;25665 25863;25864;25865;25866;25867;25868;25869;25870 25868 8 DNLEWLAR NSFMHCGTTSDQFLRDNLEWLARATNWAKF TSDQFLRDNLEWLARATNWAKFTATASLGV R D N A R A 1 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1015.5087 A0A087WW66;Q99460 A0A087WW66 388 395 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0045158 81.119 By MS/MS By matching By matching 2 3 1 1.2965 1.1559 21.805 6 Median 1.0612 1.047 37.35 2 0 Median 1.1921 1.014 15.335 3 0 Median NaN NaN NaN 0 0 Median 1.5409 1.3734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11666000 5302000 6364200 5989100 2741100 3248000 5596200 2533100 3063100 0 0 0 80883 27788 53095 0 0 0 0 0 0 5008 54 5214 25666;25667;25668;25669;25670;25671 25871;25872 25872 2 DNLGMLVWSPNQNLSEAK PDFDPAKLARRSQERDNLGMLVWSPNQNLS GMLVWSPNQNLSEAKLDEYIAIAKEKHGYN R D N A K L 1 0 3 1 0 1 1 1 0 0 3 1 1 0 1 2 0 1 0 1 0 0 18 0 2014.9782 Q9UKL0 Q9UKL0 131 148 RCOR1 REST corepressor 1 yes yes 2 1.075E-05 62.891 By MS/MS 1 0.79078 0.8112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79078 0.8112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3013600 1917600 1096000 0 0 0 0 0 0 3013600 1917600 1096000 0 0 0 0 0 0 0 0 0 5009 4312 5215 25672 25873 25873 1 DNLLNAWR LKFAYCGKWFVSTGKDNLLNAWRTPYGASI WFVSTGKDNLLNAWRTPYGASIFQSKESSS K D N W R T 1 1 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1000.509 F5H7D6;H0YNT2;A0A0D9SES8;H0YKT5;H0YKN8;H0YL70;Q04726;H0YNI7;K7EMK7;Q04725;Q04724;Q04727 F5H7D6 648 655 TLE3;TLE2;TLE1;TLE4 Transducin-like enhancer protein 3;Transducin-like enhancer protein 2;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4 yes no 2 0.0068836 69.383 By MS/MS By matching By matching By matching 1 2 1 1 1.0408 0.90538 35.291 5 Median 0.91425 0.90538 NaN 1 0 Median 1.4638 1.3127 36.044 2 0 Median 0.61232 0.64687 NaN 1 0 Median 1.0408 0.85389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2794200 1363100 1431100 1763300 827580 935760 431040 173040 258000 533370 332470 200900 66416 30006 36410 0 0 0 0 0 0 5010 261 5216 25673;25674;25675;25676;25677 25874 25874 1 DNLPIQIQK MCKDKPTETLLNTVKDNLPIQIQKLTEEKY LLNTVKDNLPIQIQKLTEEKYQVEQCVNEA K D N Q K L 0 0 1 1 0 2 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1067.5975 Q96SI9 Q96SI9 123 131 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.0036618 63.565 By MS/MS By matching 1 1 0.82858 0.7955 16.262 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85653 0.89244 NaN 1 0 Median 0.80154 0.70909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6462300 3382600 3079700 0 0 0 0 0 0 6172800 3230000 2942900 289500 152640 136850 0 0 0 0 0 0 5011 3734 5217 25678;25679 25875 25875 1 DNLPLQENVTIQK AINPELLQLLPLHPKDNLPLQENVTIQKQK PKDNLPLQENVTIQKQKRRSVNSKIPAPKE K D N Q K Q 0 0 2 1 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1510.7991 Q99661;Q5JR89;Q5JR91 Q99661 78 90 KIF2C Kinesin-like protein KIF2C;Kinesin-like protein yes no 2 0.0002163 80.834 By MS/MS By matching 3 2 0.88904 0.75457 30.17 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90046 0.9474 28.126 3 0 Median 0.77994 0.66503 15.699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13860000 7656200 6203400 0 0 0 0 0 0 12617000 7001700 5615300 1242600 654480 588160 0 0 0 0 0 0 5012 3761 5218 25680;25681;25682;25683;25684 25876 25876 1 DNLQLPLQFLSR NVSLCCDVRQLQTLKDNLQLPLQFLSRCPS TLKDNLQLPLQFLSRCPSCFYNLLNLFCEL K D N S R C 0 1 1 1 0 2 0 0 0 0 4 0 0 1 1 1 0 0 0 0 0 0 12 0 1442.7882 O15118 O15118 85 96 NPC1 Niemann-Pick C1 protein yes yes 2 0.00058433 74.162 By MS/MS By MS/MS 1 2 1.35 1.1484 3.8655 3 Plateau 1.0579 1.0631 NaN 1 0 Median 1.3314 1.1246 2.9619 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6099600 2881400 3218200 1386900 757720 629140 4712700 2123600 2589100 0 0 0 0 0 0 0 0 0 0 0 0 5013 1520 5219 25685;25686;25687 25877;25878;25879;25880 25880 4 DNLTLWTSDMQGDGEEQNK EESYKDSTLIMQLLRDNLTLWTSDMQGDGE LWTSDMQGDGEEQNKEALQDVEDENQ____ R D N N K E 0 0 2 3 0 2 2 2 0 0 2 1 1 0 0 1 2 1 0 0 0 0 19 0 2179.9328 P62258 P62258 226 244 YWHAE 14-3-3 protein epsilon yes yes 2 3.9701E-06 51.211 By matching By matching By MS/MS By matching 1 1 2 1 1.0266 0.91519 10.373 5 Median 0.78409 0.77421 NaN 1 0 Median 1.1137 0.95196 NaN 1 0 Median 0.94044 0.89112 13.658 2 0 Median 1.0875 0.91519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5712800 2904300 2808500 1123300 639780 483540 650030 330760 319280 3772900 1856400 1916500 166610 77450 89158 0 0 0 0 0 0 5014 2576 5220 25688;25689;25690;25691;25692 25881 25881 1 DNLTLWTSDTQGDEAEAGEGGEN EESYKDSTLIMQLLRDNLTLWTSDTQGDEA DTQGDEAEAGEGGEN_______________ R D N E N - 2 0 2 3 0 1 4 4 0 0 2 0 0 0 0 1 3 1 0 0 0 0 23 0 2407.9888 P63104;B0AZS6;B7Z2E6;H0YB80 P63104 223 245 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.0048432 34.82 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287900 0 0 2287900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5015 2618 5221 25693 25882 25882 1 DNMALQR IVKEFKRETGVDLTKDNMALQRVREAAEKA ETGVDLTKDNMALQRVREAAEKAKCELSSS K D N Q R V 1 1 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 7 0 846.40179 P38646;H0YBG6;A0A3B3ITN1 P38646 301 307 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.014424 74.439 By MS/MS By MS/MS 1 1 1.368 1.2799 0.85902 2 Median 1.2717 1.2877 NaN 1 0 Median 1.4716 1.2722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18314000 7427400 10887000 1778500 882730 895750 16536000 6544700 9991000 0 0 0 0 0 0 0 0 0 0 0 0 5016 2277 5222 25694;25695 25883;25884;25885;25886 25885 4 DNNELLLFILK RSMRKTFARYLSFRRDNNELLLFILKQLVA SFRRDNNELLLFILKQLVAEQVTYQRNRFG R D N L K Q 0 0 2 1 0 0 1 0 0 1 4 1 0 1 0 0 0 0 0 0 0 0 11 0 1330.7497 P49736;H0Y8E6 P49736 827 837 MCM2 DNA replication licensing factor MCM2 yes no 2 0.038681 28.399 By MS/MS By matching By MS/MS 2 1 2 0.90745 0.89853 10.604 5 Median 0.91313 0.90626 1.2116 2 0 Median 1.2588 1.1337 NaN 1 0 Median 0.83911 0.88584 0.41211 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4188600 2116100 2072500 2323500 1171600 1151900 477110 201040 276070 1388000 743470 644540 0 0 0 0 0 0 0 0 0 5017 2393 5223 25696;25697;25698;25699;25700 25887;25888 25887 2 DNNGVIGLLEPMK ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS FRDNNGVIGLLEPMKKSMVPVQVQLDVPVV R D N M K K 0 0 2 1 0 0 1 2 0 1 2 1 1 0 1 0 0 0 0 1 0 0 13 0 1398.7177 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 148 160 RCC1 Regulator of chromosome condensation yes no 2 0.0008479 77.533 By MS/MS 2 0.94065 0.92242 1.7361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94065 0.92242 1.7361 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12305000 6270700 6034300 0 0 0 0 0 0 12305000 6270700 6034300 0 0 0 0 0 0 0 0 0 5018 2061 5224 25701;25702 25889;25890 25890 2 DNNGVIGLLEPMKK ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK R D N K K S 0 0 2 1 0 0 1 2 0 1 2 2 1 0 1 0 0 0 0 1 0 0 14 1 1526.8127 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 148 161 RCC1 Regulator of chromosome condensation yes no 2;3 5.3548E-06 95.401 By MS/MS By MS/MS By matching 3 2 1 1.0162 1.0193 6.461 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96764 1.0099 9.0672 3 0 Median 1.1121 1.0562 5.8141 2 0 Median 0.96082 1.0249 NaN 1 0 Median NaN NaN NaN 0 0 Median 40406000 19863000 20543000 0 0 0 0 0 0 30086000 14971000 15115000 8349300 3894700 4454600 1970400 997550 972860 0 0 0 5019 2061 5225 25703;25704;25705;25706;25707;25708 25891;25892;25893;25894;25895;25896 25894 6 DNNLLGR GVLIQVYEGERAMTKDNNLLGRFELSGIPP EGERAMTKDNNLLGRFELSGIPPAPRGVPQ K D N G R F 0 1 2 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 800.41407 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;Q53FA3;P34931 A0A0G2JIW1 453 459 HSPA1B;HSPA1A;HSPA6;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like no no 2 0.0021044 127.95 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3568 1.244 14.627 4 Median 1.3814 1.3015 NaN 1 0 Median 1.3791 1.189 NaN 1 0 Median 1.3349 1.3542 NaN 1 0 Median 1.1661 0.97539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137660000 57640000 80021000 31652000 13059000 18593000 86449000 36444000 50005000 16451000 6917100 9534200 3109100 1220100 1889000 0 0 0 0 0 0 5020 278;2229;2035 5226 25709;25710;25711;25712 25897;25898;25899;25900;25901;25902;25903;25904 25901 8 DNNQFASASLDR EGHTHYVMQIVINPKDNNQFASASLDRTIK NPKDNNQFASASLDRTIKVWQLGSSSPNFT K D N D R T 2 1 2 2 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 12 0 1336.6008 P35606;D6R997 P35606 154 165 COPB2 Coatomer subunit beta yes no 2 0.00047044 94.297 By MS/MS By MS/MS 1 3 1.0886 0.94447 5.7138 3 Median NaN NaN NaN 0 0 Median 1.0886 0.94447 5.7138 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8234100 3745300 4488800 0 0 0 8234100 3745300 4488800 0 0 0 0 0 0 0 0 0 0 0 0 5021 2246 5227 25713;25714;25715;25716 25905;25906;25907;25908 25907 4 DNPAQDFSTLYGSSPLER AGNTKNHPMLMNLLKDNPAQDFSTLYGSSP AQDFSTLYGSSPLERQNSSSGSPRMEICSG K D N E R Q 1 1 1 2 0 1 1 1 0 0 2 0 0 1 2 3 1 0 1 0 0 0 18 0 1995.9174 Q15648 Q15648 651 668 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 2 0.00033921 39.661 By MS/MS 1 0.96859 1.0756 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96859 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554600 644530 910100 0 0 0 0 0 0 1554600 644530 910100 0 0 0 0 0 0 0 0 0 5022 2961 5228 25717 25909 25909 1 DNPEATQQMNDLIIGK AMREEVRQLMCLLTRDNPEATQQMNDLIIG NPEATQQMNDLIIGKVSTALKGHWANPDLA R D N G K V 1 0 2 2 0 2 1 1 0 2 1 1 1 0 1 0 1 0 0 0 0 0 16 0 1785.8567 Q5T4S7 Q5T4S7 3935 3950 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 6.2338E-06 85.845 By MS/MS By matching 1 2 1.1056 1.1066 26.865 3 Plateau 1.1056 1.1083 NaN 1 0 Median 0.82168 0.71915 14.006 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15289000 7622500 7666900 13529000 6690100 6839000 1760300 932370 827880 0 0 0 0 0 0 0 0 0 0 0 0 5023 3089 5229 25718;25719;25720 25910;25911 25910 2 DNPGVVTCLDEAR NGEQPLSAMVSMVTKDNPGVVTCLDEARHG TKDNPGVVTCLDEARHGFESGDFVSFSEVQ K D N A R H 1 1 1 2 1 0 1 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 13 0 1444.6616 P22314;Q5JRR9;Q5JRS0 P22314 227 239 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 6.4799E-07 126.66 By MS/MS By MS/MS 1 1 1.1151 0.99922 2.8264 2 Median 1.015 0.97944 NaN 1 0 Median 1.225 1.0194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25323000 11676000 13647000 7946900 3628500 4318400 17376000 8047800 9328200 0 0 0 0 0 0 0 0 0 0 0 0 5024 2100 5230 25721;25722 25912;25913;25914;25915 25912 4 DNPHFQSGETSIVISDVLK RAPGFGFGIAISGGRDNPHFQSGETSIVIS FQSGETSIVISDVLKGGPAEGQLQENDRVA R D N L K G 0 0 1 2 0 1 1 1 1 2 1 1 0 1 1 3 1 0 0 2 0 0 19 0 2085.0378 A0A087X0K9;G5E9E7;G3V1L9;Q07157;H0YLT6;H0YKB1 A0A087X0K9 31 49 TJP1 Tight junction protein ZO-1 yes no 3 0.037823 12.128 By MS/MS By matching 1 1 0.60724 0.64859 32.413 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73444 0.81566 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50208 0.51574 NaN 1 0 Median NaN NaN NaN 0 0 Median 2361400 1265900 1095500 0 0 0 0 0 0 1699400 910590 788770 0 0 0 662070 355310 306760 0 0 0 5025 104 5231 25723;25724 25916;25917 25916 2 DNPQTHYYAVAVVK PNNLKPVVAEFHGTKDNPQTHYYAVAVVKK KDNPQTHYYAVAVVKKDTDFKLNELRGKKS K D N V K K 2 0 1 1 0 1 0 0 1 0 0 1 0 0 1 0 1 0 2 3 0 0 14 0 1603.7995 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 107 120 yes no 2;3 8.0047E-11 120.96 By MS/MS 2 0.66691 0.6251 NaN 1 Median 0.66691 0.6251 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23058000 17919000 5139600 23058000 17919000 5139600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5026 769 5232 25725;25726 25918;25919 25918 2 DNPQTHYYAVAVVKK PNNLKPVVAEFHGTKDNPQTHYYAVAVVKK DNPQTHYYAVAVVKKDTDFKLNELRGKKSC K D N K K D 2 0 1 1 0 1 0 0 1 0 0 2 0 0 1 0 1 0 2 3 0 0 15 1 1731.8944 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 107 121 yes no 3 0.00082914 50.843 By MS/MS 2 0.078258 0.077335 20.038 2 Median 0.078258 0.077335 20.038 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11070000 10545000 524490 11070000 10545000 524490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5027 769 5233 25727;25728 25920;25921 25921 2 DNPTAQQIMQLLR SVEPAQGEAREGSPRDNPTAQQIMQLLREM PRDNPTAQQIMQLLREMQNPRERPGLGSNP R D N L R E 1 1 1 1 0 3 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 13 0 1526.7875 A0A2Q2TH77;Q08379;A0A087WYC0 A0A2Q2TH77 944 956 GOLGA2 Golgin subfamily A member 2 yes no 2 0.0094391 36.525 By MS/MS By matching By matching 1 1 1 1.1656 1.0397 16.914 3 Median 0.84677 0.84658 NaN 1 0 Median 1.3321 1.184 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1656 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1645400 796150 849260 1449200 714200 735050 136500 54730 81774 0 0 0 59653 27224 32428 0 0 0 0 0 0 5028 355 5234 25729;25730;25731 25922 25922 1 DNQLSEVANK VVPSDLYPLVLGFLRDNQLSEVANKFAKAT LGFLRDNQLSEVANKFAKATGATQQDANAS R D N N K F 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 A0A0A0MRM9;Q14978;S4R402;S4R349 A0A0A0MRM9 23 32 NOLC1 Nucleolar and coiled-body phosphoprotein 1 no no 2 0.0035251 63.534 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0315 0.91868 12.349 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8349 0.91868 NaN 1 1 Median 1.4081 1.0513 NaN 1 1 Median 1.0315 1.0666 NaN 1 1 Median 1.0125 0.84376 9.3008 2 0 Median 13567000 6632500 6934500 0 0 0 0 0 0 5962200 3083300 2878900 1096500 423530 672980 3439200 1652200 1787000 3069100 1473500 1595600 5029 165 5235 25732;25733;25734;25735;25736 25923;25924;25925;25926;25927;25928 25926 6 DNSDFDLLTVSETANEPPQDEGNSFNSPR IVVQRVGSKLFFDKRDNSDFDLLTVSETAN NEPPQDEGNSFNSPRNLAMEATYINHNFSQ R D N P R N 1 1 4 4 0 1 3 1 0 0 2 0 0 2 3 4 2 0 0 1 0 0 29 0 3194.3912 O15371 O15371 282 310 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 3 8.0492E-06 37.673 By MS/MS 1 0.60012 0.59118 NaN 1 Median 0.60012 0.59118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3661100 2755300 905810 3661100 2755300 905810 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5030 1540 5236 25737 25929 25929 1 DNSGMIDKNELK KYITDWQNVFRTYDRDNSGMIDKNELKQAL YDRDNSGMIDKNELKQALSGFGYRLSDQFH R D N L K Q 0 0 2 2 0 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 0 0 12 1 1362.6449 O75340;A0A024QZ42 O75340 105 116 PDCD6 Programmed cell death protein 6 yes no 2 0.022514 42.743 By MS/MS 1 1.009 0.89203 NaN 1 Median NaN NaN NaN 0 0 Median 1.009 0.89203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1264600 534760 729890 0 0 0 1264600 534760 729890 0 0 0 0 0 0 0 0 0 0 0 0 5031 1659 5237 25738 25930 25930 1 DNSLVLTPSHIK LVFDFMETDLEVIIKDNSLVLTPSHIKAYM IIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ K D N I K A 0 0 1 1 0 0 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 12 0 1322.7194 P50613;D6REC6;D6R9G1 P50613 104 115 CDK7 Cyclin-dependent kinase 7 yes no 2 0.00061737 67.334 By MS/MS 1 0.72444 0.69514 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72444 0.69514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2244200 1081400 1162800 0 0 0 0 0 0 2244200 1081400 1162800 0 0 0 0 0 0 0 0 0 5032 2419 5238 25739 25931 25931 1 DNSNLYMVMEYVPGGEMFSHLR AVNFPFLVKLEFSFKDNSNLYMVMEYVPGG VMEYVPGGEMFSHLRRIGRFSEPHARFYAA K D N L R R 0 1 2 1 0 0 2 2 1 0 2 0 3 1 1 2 0 0 2 2 0 0 22 0 2588.1498 A0A087WVC4;A0A0A0MS54;P22694;B1APF7;B1APG1;B1APG0;B1APG2;B1APF8;B1APF9;B1APG3;P17612;Q15136;K7ERP6 P17612 113 134 PRKACB;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha no no 3 7.7033E-05 35.015 By MS/MS 1 1.0128 0.86543 NaN 1 Median NaN NaN NaN 0 0 Median 1.0128 0.86543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1401200 686640 714530 0 0 0 1401200 686640 714530 0 0 0 0 0 0 0 0 0 0 0 0 5033 2044;40 5239 25740 25932;25933 25932 2 DNSTMGYMAAK WTANMERIMKAQALRDNSTMGYMAAKKHLE QALRDNSTMGYMAAKKHLEINPDHSIIETL R D N A K K 2 0 1 1 0 0 0 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 11 0 1187.4951 P07900 P07900 621 631 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.00016647 90.601 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1.1912 1.066 10.416 9 Median 1.1994 1.1443 4.9975 3 0 Median 1.1276 0.98714 6.4207 4 0 Median 1.1912 1.306 NaN 1 0 Median 1.2272 1.066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119870000 54449000 65418000 53502000 23869000 29633000 61880000 28677000 33203000 3062200 1336200 1726000 1423100 568020 855110 0 0 0 0 0 0 5034 1894 5240;5241 25741;25742;25743;25744;25745;25746;25747;25748;25749 25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944;25945 25943 664;665 12 DNSTMGYMMAK WTANMERIMKAQALRDNSTMGYMMAKKHLE QALRDNSTMGYMMAKKHLEINPDHPIVETL R D N A K K 1 0 1 1 0 0 0 1 0 0 0 1 3 0 0 1 1 0 1 0 0 0 11 0 1247.4985 P08238;Q58FF7 P08238 613 623 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.0001677 93.649 By MS/MS By MS/MS By MS/MS By matching By matching 5 7 1 1 1 1.2208 1.0964 16.686 15 Median 1.2178 1.0806 19.349 5 0 Median 1.2035 1.0545 10.83 7 0 Median 1.2208 1.345 NaN 1 0 Median 1.5253 1.3271 NaN 1 0 Median 1.5572 1.6063 NaN 1 0 Median NaN NaN NaN 0 0 Median 216090000 97351000 118740000 135170000 60858000 74312000 72564000 32701000 39863000 5513200 2479600 3033600 592350 244640 347700 2246500 1066600 1179900 0 0 0 5035 1899 5242;5243 25750;25751;25752;25753;25754;25755;25756;25757;25758;25759;25760;25761;25762;25763;25764 25946;25947;25948;25949;25950;25951;25952;25953;25954;25955;25956;25957;25958;25959;25960;25961 25960 668;669;670 16 DNTIMDLQTQLK VSMASTVPHSLRQARDNTIMDLQTQLKEVL QARDNTIMDLQTQLKEVLRENDLLRKDVEV R D N L K E 0 0 1 2 0 2 0 0 0 1 2 1 1 0 0 0 2 0 0 0 0 0 12 0 1418.7075 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 148 159 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.0049684 61.78 By MS/MS By MS/MS 1 1 1.5816 1.6334 71.47 2 Median 2.7384 2.7075 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.91352 0.9854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5361000 1773500 3587500 3188200 745850 2442400 0 0 0 2172800 1027700 1145200 0 0 0 0 0 0 0 0 0 5036 3311 5244 25765;25766 25962;25963 25962 2 DNTINLIHTFR ITFVLFPRHTNASARDNTINLIHTFRDYLH ASARDNTINLIHTFRDYLHYHIKCSKAYIH R D N F R D 0 1 2 1 0 0 0 0 1 2 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1342.6993 O15144;H7C3F9 O15144 238 248 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2;3 2.3235E-06 161.17 By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 1.2446 1.0968 6.2613 8 Median 1.1571 1.0815 0.40569 2 0 Median 1.372 1.1467 4.7201 2 0 Median 1.0543 1.0359 0.53967 2 0 Median 1.4325 1.1985 2.2478 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111560000 50535000 61024000 81911000 37618000 44294000 10145000 4157900 5987400 15874000 7227500 8646200 3628200 1531600 2096600 0 0 0 0 0 0 5037 1526 5245 25767;25768;25769;25770;25771;25772;25773;25774 25964;25965;25966;25967;25968;25969;25970;25971 25970 8 DNTRPGANSPEMWSEAIK RLGKSHIRTDDVHAKDNTRPGANSPEMWSE RPGANSPEMWSEAIKILKGEYAVRAIKEHK K D N I K I 2 1 2 1 0 0 2 1 0 1 0 1 1 0 2 2 1 1 0 0 0 0 18 1 2001.9214 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 392 409 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 7.0381E-07 82.01 By MS/MS By MS/MS By MS/MS 1 2 2 0.76002 0.80308 6.4274 5 Median 0.7118 0.73139 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73364 0.80541 0.40866 2 0 Median 0.86128 0.80007 9.7637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41142000 22742000 18400000 14605000 8147200 6457800 0 0 0 22550000 12588000 9962600 3986900 2007300 1979700 0 0 0 0 0 0 5038 135 5246 25775;25776;25777;25778;25779 25972;25973;25974;25975;25976;25977;25978;25979 25974 8 DNTSVYHISGK VIPNSNFYVSRTACRDNTSVYHISGKKKTF TACRDNTSVYHISGKKKTFKDVGNLLRSHG R D N G K K 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 2 1 0 1 1 0 0 11 0 1219.5833 Q9NTJ3;E9PD53;C9JR83;C9JVD8;C9J578;C9J9E4 Q9NTJ3 192 202 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.062795 25.386 By matching By MS/MS 1 1 1.1631 1.0337 23.607 2 Median NaN NaN NaN 0 0 Median 1.0048 0.87476 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3463 1.2215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1644800 735140 909670 0 0 0 999460 478820 520630 0 0 0 645350 256320 389040 0 0 0 0 0 0 5039 4108 5247 25780;25781 25980 25980 1 DNTTLLTQVQTTMR THLDTTQQMIANSLKDNTTLLTQVQTTMRE KDNTTLLTQVQTTMRENLATVEGNFASIDE K D N M R E 0 1 1 1 0 2 0 0 0 0 2 0 1 0 0 0 5 0 0 1 0 0 14 0 1620.8141 Q13561;H0YI98 Q13561 366 379 DCTN2 Dynactin subunit 2 yes no 2 6.0208E-07 119.45 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0989 1.0423 16.755 4 Median 1.152 1.114 NaN 1 1 Median 1.2354 1.0591 NaN 1 0 Median 1.0482 1.0259 NaN 1 0 Median 0.89045 0.76758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41595000 20382000 21213000 7648600 3314900 4333700 2680600 1170300 1510300 22637000 11424000 11213000 8628900 4472900 4156000 0 0 0 0 0 0 5040 2824 5248 25782;25783;25784;25785 25981;25982;25983;25984 25983 4 DNVDDPTGNFR WTKIEPSVNFLKSPKDNVDDPTGNFRSGPL KSPKDNVDDPTGNFRSGPLTGWRVFLLLLC K D N F R S 0 1 2 3 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 11 0 1248.5371 Q12907 Q12907 304 314 LMAN2 Vesicular integral-membrane protein VIP36 yes yes 2 0.00011409 129.38 By MS/MS By matching 1 1 1.123 0.9351 7.0381 2 Median NaN NaN NaN 0 0 Median 1.0679 0.88971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.181 0.98282 NaN 1 0 Median 7565200 3856300 3708900 0 0 0 5339000 2793600 2545400 0 0 0 0 0 0 0 0 0 2226200 1062800 1163400 5041 2770 5249 25786;25787 25985;25986 25986 2 DNVDLLGSLADLYFR AISTICSLEKKSLLRDNVDLLGSLADLYFR DNVDLLGSLADLYFRAGDNKNSVLKFEQAQ R D N F R A 1 1 1 3 0 0 0 1 0 0 4 0 0 1 0 1 0 0 1 1 0 0 15 0 1709.8625 Q9UJX3 Q9UJX3 269 283 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.0014708 39.266 By MS/MS By matching 2 1 1.0611 1.0538 4.9979 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.031 1.0406 1.7946 2 0 Median 1.0933 0.95698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2629900 1252500 1377400 0 0 0 0 0 0 2580700 1228500 1352200 49150 23925 25225 0 0 0 0 0 0 5042 4301 5250 25788;25789;25790 25987;25988 25987 2 DNVSSPGGATIHALHVLESGGFR AKMLLHSEQHPGQLKDNVSSPGGATIHALH ATIHALHVLESGGFRSLLINAVEASCIRTR K D N F R S 2 1 1 1 0 0 1 4 2 1 2 0 0 1 1 3 1 0 0 2 0 0 23 0 2320.156 P32322;E2QRB3;J3KQ22;J3QKT4 P32322 229 251 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 3 0.016367 14.944 By MS/MS By matching By matching By matching 1 1 1 1 1.0222 0.92688 46.233 4 Median 0.68649 0.65598 NaN 1 0 Median 1.4584 1.2517 NaN 1 0 Median 0.71643 0.68635 NaN 1 0 Median 2.0029 1.6848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5413600 2872800 2540800 3635800 2111500 1524300 527060 155930 371130 933400 491160 442240 317410 114220 203190 0 0 0 0 0 0 5043 2218 5251 25791;25792;25793;25794 25989;25990 25990 2 DNWEELYNR GGSKHGRKAAWKFIKDNWEELYNRYQGGFL AWKFIKDNWEELYNRYQGGFLISRLIKLSV K D N N R Y 0 1 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 9 0 1237.5364 E9PLK3;P55786;H0YDG0 E9PLK3 829 837 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.019228 40.045 By MS/MS 1 1.3347 1.1605 NaN 1 Median NaN NaN NaN 0 0 Median 1.3347 1.1605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2025600 846920 1178700 0 0 0 2025600 846920 1178700 0 0 0 0 0 0 0 0 0 0 0 0 5044 960 5252 25795 25991 25991 1 DNWSPALTISK CNINSQGVICLDILKDNWSPALTISKVLLS DILKDNWSPALTISKVLLSICSLLTDCNP_ K D N S K V 1 0 1 1 0 0 0 0 0 1 1 1 0 0 1 2 1 1 0 0 0 0 11 0 1230.6245 A0A087X283;C9J2P0;H7C061;B7Z306;R4GND1;A0A1B0GX65;P51965;Q96LR5;Q969T4 A0A087X283 70 80 UBE2E2;UBE2E1;UBE2E3 Ubiquitin-conjugating enzyme E2 E1;Ubiquitin-conjugating enzyme E2 E2;Ubiquitin-conjugating enzyme E2 E3 yes no 2 0.0069391 43.297 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.94917 0.83436 41.562 4 Median 0.77413 0.72212 NaN 1 0 Median 2.0162 1.8053 NaN 1 0 Median 0.8848 0.82921 NaN 1 0 Median 1.0182 0.83956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23113000 12242000 10871000 10645000 5978500 4666300 393820 171690 222130 11530000 5835000 5694600 544700 256430 288260 0 0 0 0 0 0 5045 131 5253 25796;25797;25798;25799 25992;25993;25994 25994 3 DNWSSSDGKDDPIEVSKDSIFVK INDLKLEILCKALQRDNWSSSDGKDDPIEV KDDPIEVSKDSIFVKILQKLLKDGIQLSEY R D N V K I 0 0 1 5 0 0 1 1 0 2 0 3 0 1 1 5 0 1 0 2 0 0 23 2 2567.2027 Q8WUM0 Q8WUM0 1081 1103 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.002485 25.52 By MS/MS 1 0.75478 0.90698 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75478 0.90698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7773000 4139100 3633900 0 0 0 0 0 0 7773000 4139100 3633900 0 0 0 0 0 0 0 0 0 5046 3492 5254 25800 25995 25995 1 DNYSPGWK RRLLSVNIRVRADLRDNYSPGWKFNHWELK RVRADLRDNYSPGWKFNHWELKGVPIRLEV R D N W K F 0 0 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 1 1 0 0 0 8 0 965.4243 P07814 P07814 1347 1354 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.011964 55.902 By MS/MS 1 1.1283 1.0003 NaN 1 Median NaN NaN NaN 0 0 Median 1.1283 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2506100 1271000 1235100 0 0 0 2506100 1271000 1235100 0 0 0 0 0 0 0 0 0 0 0 0 5047 1892 5255 25801 25996 25996 1 DPAEGDGAQPEETPR EFEHQRAPRVSQGSKDPAEGDGAQPEETPR DPAEGDGAQPEETPRDGDKPEETQGKAEKD K D P P R D 2 1 0 2 0 1 3 2 0 0 0 0 0 0 3 0 1 0 0 0 0 0 15 0 1567.675 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 192 206 GANAB Neutral alpha-glucosidase AB no no 2 2.7277E-10 109.24 By MS/MS 2 0.96483 0.84738 48.762 2 Median NaN NaN NaN 0 0 Median 0.96483 0.84738 48.762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3227800 1665000 1562700 0 0 0 3227800 1665000 1562700 0 0 0 0 0 0 0 0 0 0 0 0 5048 2896;951 5256 25802;25803 25997 25997 1 DPALNSGVSQKPDPAK TTGAKKRAAPKGTKRDPALNSGVSQKPDPA PALNSGVSQKPDPAKTKNRRKRKPSTSDDS R D P A K T 2 0 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 16 1 1622.8264 P11388 P11388 1444 1459 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.010175 24.353 By MS/MS By MS/MS 1 1 0.58754 0.64929 6.5042 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59128 0.67985 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58382 0.62011 NaN 1 0 Median NaN NaN NaN 0 0 Median 5327100 3412600 1914500 0 0 0 0 0 0 2850200 1658600 1191700 0 0 0 2476800 1754000 722860 0 0 0 5049 1963 5257 25804;25805 25998;25999;26000;26001 26000 4 DPAQPMSPGEATQSGAR ______________________________ AQPMSPGEATQSGARPADRYGLLKHSREFL R D P A R P 3 1 0 1 0 2 1 2 0 0 0 0 1 0 3 2 1 0 0 0 0 0 17 0 1698.7631 Q9BQG0 Q9BQG0 5 21 MYBBP1A Myb-binding protein 1A yes yes 2 0.031647 23.676 By MS/MS 1 0.98913 0.8578 NaN 1 Median NaN NaN NaN 0 0 Median 0.98913 0.8578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1321200 622200 698990 0 0 0 1321200 622200 698990 0 0 0 0 0 0 0 0 0 0 0 0 5050 3789 5258 25806 26002 26002 1 DPAQPMSPGEATQSGARPADR ______________________________ SPGEATQSGARPADRYGLLKHSREFLDFFW R D P D R Y 4 2 0 2 0 2 1 2 0 0 0 0 1 0 4 2 1 0 0 0 0 0 21 1 2137.9811 Q9BQG0 Q9BQG0 5 25 MYBBP1A Myb-binding protein 1A yes yes 3 0.00022403 32.981 By MS/MS By matching 1 1 0.40019 0.45903 29.486 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46492 0.56545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34447 0.37264 NaN 1 0 Median NaN NaN NaN 0 0 Median 15370000 10093000 5277300 0 0 0 0 0 0 11761000 7789400 3971800 0 0 0 3608800 2303300 1305400 0 0 0 5051 3789 5259 25807;25808 26003;26004;26005 26005 3 DPDAQPGGELMLGGTDSK QKLVDQNIFSFYLSRDPDAQPGGELMLGGT AQPGGELMLGGTDSKYYKGSLSYLNVTRKA R D P S K Y 1 0 0 3 0 1 1 4 0 0 2 1 1 0 2 1 1 0 0 0 0 0 18 0 1786.8043 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;H7C469;F8WD96;C9JH19 A0A1B0GW44 229 246 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 9.2522E-15 111.12 By MS/MS By MS/MS By MS/MS 3 3 1 1.2444 1.21 59.1 7 Median 1.1808 1.0965 7.2756 3 0 Median 1.4477 1.2125 91.351 3 0 Median 1.4997 1.4101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59553000 23237000 36316000 40262000 15686000 24575000 11967000 4630900 7336300 7323900 2919400 4404500 0 0 0 0 0 0 0 0 0 5052 324 5260;5261 25809;25810;25811;25812;25813;25814;25815 26006;26007;26008;26009;26010;26011;26012;26013;26014;26015 26006 155 10 DPDQTDGLGLSYLSSHIANVER GGETPLFKQFFKNWRDPDQTDGLGLSYLSS LGLSYLSSHIANVERVPFDAATLHTSTAMA R D P E R V 1 1 1 3 0 1 1 2 1 1 3 0 0 0 1 3 1 0 1 1 0 0 22 0 2386.1401 A0A0A0MS51;A0A0A0MT01;P06396 A0A0A0MS51 364 385 GSN Gelsolin yes no 3 2.7207E-09 52.509 By matching By MS/MS 1 1 0.76838 0.71482 0.85406 2 Median 0.71167 0.71051 NaN 1 0 Median 0.82961 0.71915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3381800 1714200 1667600 638890 352830 286060 2742900 1361400 1381500 0 0 0 0 0 0 0 0 0 0 0 0 + 5053 176 5262 25816;25817 26016 26016 1 DPEAGDVEADPGLADLPQQLLFVHQGETELK GADHQITQWDLAVERDPEAGDVEADPGLAD PQQLLFVHQGETELKELHWHPQCPGLLVST R D P L K E 3 0 0 4 0 3 4 3 1 0 5 1 0 1 3 0 1 0 0 2 0 0 31 0 3330.6256 Q9BQ67 Q9BQ67 388 418 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 3 8.4389E-30 76.162 By matching By MS/MS By matching By matching 1 2 1 1 0.60629 0.58524 24.941 5 Median NaN NaN NaN 0 0 Median 0.52284 0.46141 NaN 1 0 Median 0.67992 0.67097 19.333 2 0 Median 0.60629 0.53331 NaN 1 0 Median 0.8645 0.83554 NaN 1 0 Median NaN NaN NaN 0 0 Median 15607000 8262700 7344700 0 0 0 712140 414180 297960 14115000 7461400 6653600 193020 85937 107080 587270 301220 286050 0 0 0 5054 3784 5263 25818;25819;25820;25821;25822 26017 26017 1 DPEEIEKEEQAAAEK REHPWEVMPDLYFYRDPEEIEKEEQAAAEK DPEEIEKEEQAAAEKAVTKEEFQGEWTAPA R D P E K A 3 0 0 1 0 1 6 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 15 1 1714.7897 C9J9K3;A0A0C4DG17;P08865 C9J9K3 206 220 RPSA 40S ribosomal protein SA yes no 2;3 2.127E-08 119.45 By MS/MS By MS/MS 1 3 0.79857 0.77577 22.688 4 Median NaN NaN NaN 0 0 Median 0.76983 0.69437 NaN 1 0 Median 0.82838 0.86671 25.315 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24307000 12555000 11752000 0 0 0 8198100 4163100 4035000 16109000 8392100 7717100 0 0 0 0 0 0 0 0 0 5055 232 5264 25823;25824;25825;25826 26018;26019;26020;26021 26019 4 DPENFPFVVLGNK LDSWRDEFLIQASPRDPENFPFVVLGNKID PRDPENFPFVVLGNKIDLENRQVATKRAQA R D P N K I 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 0 2 0 0 13 0 1474.7456 P51149;C9J592 P51149 114 126 RAB7A Ras-related protein Rab-7a yes no 2 0.00018514 81.95 By MS/MS By MS/MS By matching By matching 2 2 1 2 0.80097 0.72396 18.225 7 Median NaN NaN NaN 0 0 Median 0.96724 0.82094 15.51 2 0 Median 0.63559 0.60594 25.166 2 1 Median 0.78957 0.64021 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85682 0.72341 9.652 2 0 Median 11345000 6446100 4898500 0 0 0 3855700 2071500 1784300 6849600 4057100 2792500 187830 106250 81580 0 0 0 451530 211330 240190 5056 2428 5265 25827;25828;25829;25830;25831;25832;25833 26022;26023;26024;26025;26026 26022 5 DPEPPEKEFTPYDYSQSDFK QKQEKKRLKISKKPKDPEPPEKEFTPYDYS EKEFTPYDYSQSDFKAFAGNSKSKVSSQFD K D P F K A 0 0 0 3 0 1 3 0 0 0 0 2 0 2 4 2 1 0 2 0 0 0 20 1 2418.054 Q01780 Q01780 807 826 EXOSC10 Exosome component 10 yes yes 3 3.7089E-11 75.55 By MS/MS 1 0.52276 0.59789 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52276 0.59789 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3582500 2326700 1255900 0 0 0 0 0 0 3582500 2326700 1255900 0 0 0 0 0 0 0 0 0 5057 2691 5266 25834 26027 26027 1 DPESETDNDSQEIFK EQMYNILMWIHDNYRDPESETDNDSQEIFK DPESETDNDSQEIFKLAKDVLIQGLIDENP R D P F K L 0 0 1 3 0 1 3 0 0 1 0 1 0 1 1 2 1 0 0 0 0 0 15 0 1752.7326 P78527 P78527 2486 2500 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.066965 21.372 By matching By MS/MS 1 1 0.94631 0.96088 21.813 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75136 0.82354 NaN 1 0 Median 1.1918 1.1211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2814000 1526700 1287300 0 0 0 0 0 0 1887500 1048700 838810 926540 478030 448510 0 0 0 0 0 0 5058 2647 5267 25835;25836 26028 26028 1 DPFAHLPK MDECEQALAAEPKAKDPFAHLPKSTFVLDE AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE K D P P K S 1 0 0 1 0 0 0 0 1 0 1 1 0 1 2 0 0 0 0 0 0 0 8 0 923.4865 P26641 P26641 278 285 EEF1G Elongation factor 1-gamma yes yes 2 0.0025916 124.59 By MS/MS By MS/MS By MS/MS 1 1 3 0.81471 0.7318 14.5 4 Median 0.7494 0.69613 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95874 0.9183 NaN 1 0 Median 0.81471 0.71295 10.759 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 237900000 125680000 112220000 10995000 5907500 5087200 0 0 0 36759000 18025000 18734000 190150000 101750000 88402000 0 0 0 0 0 0 5059 2149 5268 25837;25838;25839;25840;25841 26029;26030;26031;26032;26033;26034;26035;26036;26037;26038 26036 10 DPGGITAGSTDEPPMLTK GVPEEAQPPRLGQERDPGGITAGSTDEPPM GITAGSTDEPPMLTKEEPVPELLEAETMEM R D P T K E 1 0 0 2 0 0 1 3 0 1 1 1 1 0 3 1 3 0 0 0 0 0 18 0 1785.8455 I3L1Q2;Q8WUZ0 I3L1Q2 148 165 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 2 1.1104E-07 89.43 By MS/MS By matching 1 1 0.66073 0.59682 15.788 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55485 0.53378 NaN 1 0 Median 0.7868 0.66731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9738800 5608900 4129900 0 0 0 0 0 0 9465500 5466100 3999500 273260 142800 130460 0 0 0 0 0 0 5060 1278 5269 25842;25843 26039;26040 26039 2 DPGGQAGIIREPSEGAK DRAKRSESMEPKVFRDPGGQAGIIREPSEG GGQAGIIREPSEGAKEDPHQHSTAAEEKTS R D P A K E 2 1 0 1 0 1 2 4 0 2 0 1 0 0 2 1 0 0 0 0 0 0 17 1 1680.8431 C9J9V0;Q5THK1 C9J9V0 124 140 PRR14L Protein PRR14L yes no 2 0.001599 45.077 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2.1785 1.9214 33.416 5 Median 0.99848 0.99768 NaN 1 0 Median 1.6584 1.5127 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2182 2.0339 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3543 2.1203 13.926 2 0 Median 101180000 47281000 53901000 88514000 42700000 45814000 9289100 3583400 5705600 0 0 0 2475200 740850 1734400 0 0 0 904230 257250 646980 5061 682 5270 25844;25845;25846;25847;25848 26041;26042;26043;26044;26045 26045 5 DPGMGAMGGMGGGMGGGMF TTAEVVVTEIPKEEKDPGMGAMGGMGGGMG GAMGGMGGGMGGGMF_______________ K D P M F - 1 0 0 1 0 0 0 10 0 0 0 0 5 1 1 0 0 0 0 0 0 0 19 0 1673.6129 P10809 P10809 555 573 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.00051535 51.252 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7027300 0 0 7027300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5062 1947 5271 25849 26046 26046 1 DPGSAPSLGDRVPYVIISAAK GKQAHVELAERMRKRDPGSAPSLGDRVPYV SLGDRVPYVIISAAKGVAAYMKSEDPLFVL R D P A K G 3 1 0 2 0 0 0 2 0 2 1 1 0 0 3 3 0 0 1 2 0 0 21 1 2112.1215 M0R2B7;P28340;A0A087WYJ2;M0QXE6;M0QXQ2 M0R2B7 937 957 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 3 0.068352 7.8038 By matching By MS/MS 1 1 0.5865 0.6186 26.13 2 Median NaN NaN NaN 0 0 Median 0.76386 0.74414 NaN 1 0 Median 0.45031 0.51424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1559000 971690 587310 0 0 0 160770 83175 77595 1398200 888520 509710 0 0 0 0 0 0 0 0 0 5063 1436 5272 25850;25851 26047 26047 1 DPGVITYDLPTPPGEK PPGEKKPKPEKREKRDPGVITYDLPTPPGE PGVITYDLPTPPGEKKDVSGPMPDSYSPRY R D P E K K 0 0 0 2 0 0 1 2 0 1 1 1 0 0 4 0 2 0 1 1 0 0 16 0 1697.8512 P26640;A0A140T936;A0A140T954 P26640 274 289 VARS Valine--tRNA ligase yes no 2 0.0047216 33.886 By matching By MS/MS 1 1 0.77833 0.67922 1.4145 2 Median NaN NaN NaN 0 0 Median 0.75439 0.68605 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80304 0.67246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1170800 665300 505470 0 0 0 172460 95772 76686 0 0 0 998310 569530 428790 0 0 0 0 0 0 5064 2148 5273 25852;25853 26048 26048 1 DPHLACVAYER PYYDSRVVGKYCEKRDPHLACVAYERGQCD CEKRDPHLACVAYERGQCDLELINVCNENS R D P E R G 2 1 0 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 11 0 1329.6136 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 917 927 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 3 0.0018259 43.68 By MS/MS 3 1.2028 1.0267 28.663 3 Median NaN NaN NaN 0 0 Median 1.2028 1.0267 28.663 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12115000 5575100 6539900 0 0 0 12115000 5575100 6539900 0 0 0 0 0 0 0 0 0 0 0 0 5065 44 5274 25854;25855;25856 26049;26050 26049 2 DPHSGHFVALK AEIGVGAYGTVYKARDPHSGHFVALKSVRV YKARDPHSGHFVALKSVRVPNGGGGGGGLP R D P L K S 1 0 0 1 0 0 0 1 2 0 1 1 0 1 1 1 0 0 0 1 0 0 11 0 1206.6146 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8;F8VYY1 P11802 25 35 CDK4 Cyclin-dependent kinase 4 yes no 3 0.0010262 49.189 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1195 1.0149 34.396 4 Median 0.57746 0.55963 NaN 1 0 Median 1.1949 1.0038 NaN 1 0 Median 1.0488 1.0261 NaN 1 0 Median 1.2106 1.2384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9116900 4505900 4611000 3326500 2105900 1220600 3437300 1468300 1969000 979750 400170 579580 1373400 531550 841840 0 0 0 0 0 0 5066 1971 5275 25857;25858;25859;25860 26051;26052;26053 26053 3 DPIDVNYEK VAYSLLRGGSDDSSKDPIDVNYEKLKTDIK SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA K D P E K L 0 0 1 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 9 0 1091.5135 P09874 P09874 788 796 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00046677 123.72 By MS/MS By MS/MS 2 1 1.014 0.88223 14.207 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83635 0.91489 19.872 2 0 Median 1.014 0.88223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15801000 8063200 7738100 0 0 0 0 0 0 8437100 4460900 3976200 7364200 3602300 3761900 0 0 0 0 0 0 5067 1922 5276 25861;25862;25863 26054;26055;26056;26057 26057 4 DPIPYLPPLEK TQFLPPNLLALFAPRDPIPYLPPLEKLPHE FAPRDPIPYLPPLEKLPHEKHHNQPYCGIA R D P E K L 0 0 0 1 0 0 1 0 0 1 2 1 0 0 4 0 0 0 1 0 0 0 11 0 1280.7016 P08621 P08621 17 27 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.00045356 69.375 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 3 2 4 4 0.53251 0.5167 22.751 14 Median NaN NaN NaN 0 0 Median 0.71687 0.61006 NaN 1 1 Median 0.51722 0.49476 8.0662 3 0 Median 0.43793 0.40246 66.107 2 0 Median 0.5356 0.537 11.481 4 0 Median 0.57457 0.47306 12.965 4 0 Median 229020000 145720000 83296000 0 0 0 4546200 2614000 1932300 181450000 116670000 64781000 1053800 694170 359630 36627000 22522000 14105000 5341100 3223500 2117600 5068 1905 5277 25864;25865;25866;25867;25868;25869;25870;25871;25872;25873;25874;25875;25876;25877 26058;26059;26060;26061;26062;26063;26064;26065;26066;26067;26068;26069 26060 12 DPIVMGVTVEAGQVK PCKIKILPQYIFNSRDPIVMGVTVEAGQVK DPIVMGVTVEAGQVKQGTPMCVPSKNFVDI R D P V K Q 1 0 0 1 0 1 1 2 0 1 0 1 1 0 1 0 1 0 0 4 0 0 15 0 1541.8123 A0A087WUT6;O60841 A0A087WUT6 1106 1120 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00029392 75.819 By matching By matching By MS/MS 1 1 2 0.9759 0.90139 4.031 4 Median NaN NaN NaN 0 0 Median 1.0578 0.90296 NaN 1 0 Median 0.83953 0.91042 NaN 1 0 Median 0.9759 0.86672 5.3004 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10840000 5616500 5223800 0 0 0 3198200 1576500 1621700 4408100 2354000 2054100 3234000 1686000 1548000 0 0 0 0 0 0 5069 35 5278 25878;25879;25880;25881 26070 26070 14 1 DPKNVLITDFFGSVR LCVSTPGHRTDLFQRDPKNVLITDFFGSVR DPKNVLITDFFGSVRKVEITTETIKLQQDS R D P V R K 0 1 1 2 0 0 0 1 0 1 1 1 0 2 1 1 1 0 0 2 0 0 15 1 1706.8992 Q92643;A6NEM5;B1AK81 Q92643 294 308 PIGK GPI-anchor transamidase yes no 3 0.064877 11.262 By MS/MS 1 0.88911 0.95244 NaN 1 Median 0.88911 0.95244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3421300 1677300 1744100 3421300 1677300 1744100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5070 510 5279 25882 26071 26071 1 DPLNPIKQDVKK EVPRWSNAKMEIATKDPLNPIKQDVKKGKL ATKDPLNPIKQDVKKGKLRYVANLFPYKGY K D P K K G 0 0 1 2 0 1 0 0 0 1 1 3 0 0 2 0 0 0 0 1 0 0 12 2 1393.7929 Q15181;Q5SQT6 Q15181 64 75 PPA1 Inorganic pyrophosphatase yes no 3 0.0049361 35.006 By MS/MS By MS/MS 1 1 0.86303 0.87909 6.4565 2 Median 0.804 0.83986 NaN 1 0 Median 0.9264 0.92016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4114000 1868000 2246100 2496000 1204400 1291600 1618000 663560 954480 0 0 0 0 0 0 0 0 0 0 0 0 5071 2934 5280 25883;25884 26072;26073;26074;26075 26072 4 DPNIVIAK NLEPKYKELGEKLSKDPNIVIAKMDATAND LGEKLSKDPNIVIAKMDATANDVPSPYEVR K D P A K M 1 0 1 1 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 8 0 868.50182 P30101 P30101 426 433 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0078694 65.252 By MS/MS 1 1.0727 0.9149 NaN 1 Median NaN NaN NaN 0 0 Median 1.0727 0.9149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3659600 1741800 1917800 0 0 0 3659600 1741800 1917800 0 0 0 0 0 0 0 0 0 0 0 0 5072 2189 5281 25885 26076;26077 26077 2 DPNLLLSVSK VGHGNAINELKFHPRDPNLLLSVSKDHALR KFHPRDPNLLLSVSKDHALRLWNIQTDTLV R D P S K D 0 0 1 1 0 0 0 0 0 0 3 1 0 0 1 2 0 0 0 1 0 0 10 0 1084.6128 E9PJK2;O75530 E9PJK2 202 211 EED Polycomb protein EED yes no 2 0.014855 38.754 By matching By MS/MS By matching 1 2 1 0.87472 0.87743 10.563 4 Median NaN NaN NaN 0 0 Median 0.81067 0.72901 NaN 1 0 Median 0.87472 0.87743 1.4704 2 0 Median 1.059 0.92777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8245400 4420600 3824800 0 0 0 350600 148280 202320 7488300 4082500 3405800 406510 189820 216700 0 0 0 0 0 0 5073 944 5282 25886;25887;25888;25889 26078;26079 26079 2 DPNNLFMVR RLAAMLRQLAQYHAKDPNNLFMVRLAQGLT AQYHAKDPNNLFMVRLAQGLTHLGKGTLTL K D P V R L 0 1 2 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 9 0 1104.5386 Q13200;H7C1H2 Q13200 755 763 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 3.7145E-05 153.73 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1.147 1.0337 11.751 6 Median 1.047 1.0166 19.229 2 1 Median 1.1191 0.96974 NaN 1 0 Median 1.1285 1.2072 NaN 1 0 Median 1.3098 1.0804 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1658 0.98899 NaN 1 0 Median 22036000 10478000 11558000 16670000 7959800 8710300 3901300 1879400 2021800 1209000 537080 671880 124840 55862 68979 0 0 0 130740 45852 84889 5074 2796 5283 25890;25891;25892;25893;25894;25895 26080;26081;26082 26081 3 DPNNLLNDWSQK KVDRLAGIINFQRPKDPNNLLNDWSQKLNS RPKDPNNLLNDWSQKLNSLMSLVNKTTHLI K D P Q K L 0 0 3 2 0 1 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 12 0 1442.679 O00232 O00232 420 431 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.00061097 68.657 By MS/MS By matching 1 2 1.6299 1.4314 15.98 3 Median 1.4773 1.3741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8363 1.6253 17.967 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11280000 3907200 7372600 10284000 3656000 6627800 0 0 0 0 0 0 996130 251260 744870 0 0 0 0 0 0 5075 1449 5284 25896;25897;25898 26083;26084 26083 2 DPNVVGQLAK GVFNSGLKGGVHLTKDPNVVGQLAKQMIGY VHLTKDPNVVGQLAKQMIGYNLATKQTPKE K D P A K Q 1 0 1 1 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1039.5662 Q96I99;E9PDQ8 Q96I99 109 118 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.011506 57.59 By MS/MS 1 0.67243 0.57614 NaN 1 Median NaN NaN NaN 0 0 Median 0.67243 0.57614 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530000 2448300 2081700 0 0 0 4530000 2448300 2081700 0 0 0 0 0 0 0 0 0 0 0 0 5076 3678 5285 25899 26085 26085 1 DPPHRPHPHELVGK GYTGPGTVRISLVTKDPPHRPHPHELVGKD KDPPHRPHPHELVGKDCRDGFYEAELCPDR K D P G K D 0 1 0 1 0 0 1 1 3 0 1 1 0 0 4 0 0 0 0 1 0 0 14 1 1614.8379 Q2TAM5;E9PKH5;A0A087X0W8;Q04206;E9PI38;E9PQS6;E9PKV4;A0A087WVP0;E9PMD5;E9PJR1;E9PRX2;E9PNV4 Q2TAM5 80 93 RELA Transcription factor p65 yes no 4 0.0045448 30.483 By MS/MS 1 0.56523 0.51924 NaN 1 Median NaN NaN NaN 0 0 Median 0.56523 0.51924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1903100 1154200 748900 0 0 0 1903100 1154200 748900 0 0 0 0 0 0 0 0 0 0 0 0 5077 114 5286 25900 26086;26087 26087 2 DPPMFIPTPVDR DMRPETDPQSMFGMRDPPMFIPTPVDRYRQ GMRDPPMFIPTPVDRYRQILLPALQLCQVI R D P D R Y 0 1 0 2 0 0 0 0 0 1 0 0 1 1 4 0 1 0 0 1 0 0 12 0 1383.6857 Q92621;U3KPX2 Q92621 1604 1615 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.0011648 85.533 By MS/MS 1 0.47392 0.5222 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47392 0.5222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5126300 3304500 1821800 0 0 0 0 0 0 5126300 3304500 1821800 0 0 0 0 0 0 0 0 0 5078 3547 5287 25901 26088;26089 26089 1762 2 DPPSWSVLAGHSR GGLIQTARALAVNPRDPPSWSVLAGHSRTV PRDPPSWSVLAGHSRTVSDSIKKLITSMRD R D P S R T 1 1 0 1 0 0 0 1 1 0 1 0 0 0 2 3 0 1 0 1 0 0 13 0 1407.6895 Q9Y490 Q9Y490 1626 1638 TLN1 Talin-1 yes yes 2;3 5.571E-05 126.67 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 1 1 0.94689 0.87186 37.819 9 Median 0.81251 0.76264 18.928 2 0 Median 1.0567 0.89998 19.648 3 0 Median 0.9726 1.072 NaN 1 0 Median 0.93756 0.8208 NaN 1 0 Median 2.0135 2.1054 NaN 1 0 Median 0.68873 0.56488 NaN 1 0 Median 37960000 20658000 17302000 24200000 13984000 10216000 6529100 3105700 3423400 5012900 2558800 2454200 315870 155300 160570 1695300 724130 971220 206900 130170 76729 5079 4441 5288 25902;25903;25904;25905;25906;25907;25908;25909;25910 26090;26091;26092;26093;26094;26095 26091 6 DPQALSEHLK MSDPAMRLILEQMQKDPQALSEHLKNPVIA EQMQKDPQALSEHLKNPVIAQKIQKLMDVG K D P L K N 1 0 0 1 0 1 1 0 1 0 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1136.5826 P31948 P31948 514 523 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.00032392 125.18 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0124 0.87102 8.0778 4 Linear 0.97388 0.92646 NaN 1 0 Median 0.99479 0.82205 NaN 1 0 Median 0.90075 0.92291 NaN 1 0 Median 0.92898 0.79061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152460000 76370000 76086000 6984400 3456200 3528300 140150000 70246000 69905000 1659900 850240 809670 3661200 1817600 1843500 0 0 0 0 0 0 5080 2212 5289 25911;25912;25913;25914 26096;26097;26098;26099;26100;26101;26102;26103 26101 8 DPQALSEHLKNPVIAQK MSDPAMRLILEQMQKDPQALSEHLKNPVIA QALSEHLKNPVIAQKIQKLMDVGLIAIR__ K D P Q K I 2 0 1 1 0 2 1 0 1 1 2 2 0 0 2 1 0 0 0 1 0 0 17 1 1887.0214 P31948 P31948 514 530 STIP1 Stress-induced-phosphoprotein 1 yes yes 2;3 4.5757E-58 182.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 0.88978 0.84487 4.2767 6 Median 0.88978 0.82475 1.1191 2 1 Median 0.91247 0.84943 NaN 1 0 Median 0.83768 0.90321 0.98116 2 0 Median 0.91009 0.84034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 224600000 113460000 111140000 172190000 86117000 86076000 29133000 14770000 14363000 20913000 11206000 9707400 2360500 1368700 991850 0 0 0 0 0 0 5081 2212 5290 25915;25916;25917;25918;25919;25920;25921 26104;26105;26106;26107;26108;26109;26110;26111;26112;26113;26114 26106 11 DPQLVPILIEAAR FLTTAIRPHGIFGPRDPQLVPILIEAARNG PRDPQLVPILIEAARNGKMKFVIGNGKNLV R D P A R N 2 1 0 1 0 1 1 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 13 0 1433.8242 Q15738;C9JDR0 Q15738 208 220 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes no 2 0.00034487 76.228 By MS/MS By MS/MS By matching 1 2 2 0.83249 0.83063 14.749 5 Median 0.83249 0.83063 NaN 1 0 Median 0.8735 0.75727 24.322 2 0 Median 0.86698 0.86821 9.3254 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10323000 5063700 5259300 3111100 1698600 1412400 6535600 2997600 3538000 676360 367410 308950 0 0 0 0 0 0 0 0 0 5082 2966 5291 25922;25923;25924;25925;25926 26115;26116;26117 26117 3 DPSASPGDAGEQAIR ASIDSKLNQAKGWLRDPSASPGDAGEQAIR DPSASPGDAGEQAIRQILDEAGKVGELCAG R D P I R Q 3 1 0 2 0 1 1 2 0 1 0 0 0 0 2 2 0 0 0 0 0 0 15 0 1469.6746 P18206 P18206 286 300 VCL Vinculin yes yes 2 3.3122E-14 178.81 By MS/MS By MS/MS 1 1 0.6557 0.59402 13.701 2 Median 0.54645 0.53917 NaN 1 0 Median 0.7868 0.65445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20315000 11313000 9001900 2149100 1452200 696890 18166000 9861300 8305000 0 0 0 0 0 0 0 0 0 0 0 0 5083 2057 5292 25927;25928 26118;26119;26120 26119 3 DPSEEIEILLR TNMEYAVKVIDKSKRDPSEEIEILLRYGQH KSKRDPSEEIEILLRYGQHPNIITLKDVYD R D P L R Y 0 1 0 1 0 0 3 0 0 2 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1312.6874 E9PGT3;Q15418;B7Z3B5;F2Z2J1;Q15349;Q5SVM6 E9PGT3 444 454 RPS6KA1;RPS6KA2 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2 yes no 2 0.00088993 85.731 By MS/MS 1 0.92052 0.79768 NaN 1 Median NaN NaN NaN 0 0 Median 0.92052 0.79768 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3244900 1498300 1746600 0 0 0 3244900 1498300 1746600 0 0 0 0 0 0 0 0 0 0 0 0 5084 926 5293 25929 26121 26121 1 DPSQIDNNEPYMK KQMGYQCFVSFFDLRDPSQIDNNEPYMKIP LRDPSQIDNNEPYMKIPCNDSKITSAVWGP R D P M K I 0 0 2 2 0 1 1 0 0 1 0 1 1 0 2 1 0 0 1 0 0 0 13 0 1549.6719 Q13347 Q13347 129 141 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2 0.0026125 64.297 By MS/MS By MS/MS 1 1 4.5571 4.096 87.629 2 Median NaN NaN NaN 0 0 Median 2.6271 2.2042 NaN 1 1 Median 7.905 7.6114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20845000 3482500 17362000 0 0 0 5265000 1295800 3969200 15580000 2186700 13393000 0 0 0 0 0 0 0 0 0 5085 2806 5294 25930;25931 26122;26123 26123 2 DPSQQELPR LKMVVPGLDGAQIPRDPSQQELPRLLSAAC GAQIPRDPSQQELPRLLSAACRLQLNGNLQ R D P P R L 0 1 0 1 0 2 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 9 0 1068.52 P49327;A0A0U1RQF0 P49327 1172 1180 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 2.2325E-16 190.26 By matching By MS/MS 1 3 0.83416 0.70821 21.776 4 Median 0.53715 0.5391 NaN 1 0 Median 0.86633 0.74109 15.273 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17125000 9036700 8088400 1863500 1297600 565960 15262000 7739200 7522400 0 0 0 0 0 0 0 0 0 0 0 0 5086 2377 5295 25932;25933;25934;25935 26124;26125;26126;26127;26128;26129 26127 6 DPSTSVPASGAHQPPQTTEGEK HGIRSAPSSSDSATRDPSTSVPASGAHQPP ASGAHQPPQTTEGEKSPEPLGLPQSQSAQA R D P E K S 2 0 0 1 0 2 2 2 1 0 0 1 0 0 4 3 3 0 0 1 0 0 22 0 2220.0295 Q9UPN7 Q9UPN7 824 845 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 3 0.060906 7.1117 By MS/MS 1 0.37999 0.33434 NaN 1 Median NaN NaN NaN 0 0 Median 0.37999 0.33434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1894700 1352700 542010 0 0 0 1894700 1352700 542010 0 0 0 0 0 0 0 0 0 0 0 0 5087 4356 5296 25936 26130 26130 1 DPTEEIEILLR TNMEFAVKIIDKSKRDPTEEIEILLRYGQH KSKRDPTEEIEILLRYGQHPNIITLKDVYD R D P L R Y 0 1 0 1 0 0 3 0 0 2 2 0 0 0 1 0 1 0 0 0 0 0 11 0 1326.7031 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 430 440 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0054939 45.997 By MS/MS 1 1.016 0.90273 NaN 1 Median NaN NaN NaN 0 0 Median 1.016 0.90273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1160600 599840 560740 0 0 0 1160600 599840 560740 0 0 0 0 0 0 0 0 0 0 0 0 5088 581 5297 25937 26131 26131 1 DPTPSFYDLWAQEDPNAVLGR VHAIKMGWIQPRRPRDPTPSFYDLWAQEDP YDLWAQEDPNAVLGRHKMHVPAPKLALPGH R D P G R H 2 1 1 3 0 1 1 1 0 0 2 0 0 1 3 1 1 1 1 1 0 0 21 0 2390.1179 Q14137 Q14137 275 295 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 1.1027E-07 50.675 By MS/MS By matching 1 1 0.77575 0.73329 8.5628 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65477 0.69021 NaN 1 0 Median 0.91907 0.77906 NaN 1 0 Median 4113100 2375200 1737900 0 0 0 0 0 0 0 0 0 0 0 0 3968800 2304200 1664600 144260 70977 73280 5089 2856 5298 25938;25939 26132;26133 26132 2 DPTVHDDVLELEMDELNR DPRPATGRFRRREQRDPTVHDDVLELEMDE VHDDVLELEMDELNRHECMAPLTALVKHMH R D P N R H 0 1 1 4 0 0 3 0 1 0 3 0 1 0 1 0 1 0 0 2 0 0 18 0 2138.979 P78527 P78527 2073 2090 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.3851E-06 65.107 By matching By MS/MS 1 1 0.97244 0.90194 17.034 2 Median 0.78946 0.79959 NaN 1 0 Median 1.1978 1.0174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6405500 3006200 3399300 2829300 1436000 1393300 3576200 1570200 2006000 0 0 0 0 0 0 0 0 0 0 0 0 5090 2647 5299 25940;25941 26134;26135 26135 2 DPTVSQTFMLDR KTEVAECKEKFAASKDPTVSQTFMLDRVFN ASKDPTVSQTFMLDRVFNPEGKALPPMRGF K D P D R V 0 1 0 2 0 1 0 0 0 0 1 0 1 1 1 1 2 0 0 1 0 0 12 0 1408.6657 Q9UKN8 Q9UKN8 138 149 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 3.6377E-13 123.88 By MS/MS 2 0.78725 0.83929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78725 0.83929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5829500 3093600 2735800 0 0 0 0 0 0 5829500 3093600 2735800 0 0 0 0 0 0 0 0 0 5091 4314 5300 25942;25943 26136;26137 26137 2 DPVQEAWAEDVDLR RQAHLYRGIFPVLCKDPVQEAWAEDVDLRV KDPVQEAWAEDVDLRVNFAMNVGKARGFFK K D P L R V 2 1 0 3 0 1 2 0 0 0 1 0 0 0 1 0 0 1 0 2 0 0 14 0 1641.7635 P14618;B4DNK4 P14618 476 489 PKM Pyruvate kinase PKM;Pyruvate kinase no no 2 7.6282E-08 100.55 By MS/MS By MS/MS By MS/MS 1 1 1 0.88559 0.81902 2.4755 3 Median 0.88559 0.84938 NaN 1 0 Median 0.93613 0.81016 NaN 1 0 Median 0.78483 0.81902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16413000 8187600 8225500 7660400 3726100 3934300 5362700 2713700 2649000 3389900 1747700 1642200 0 0 0 0 0 0 0 0 0 5092 2005 5301 25944;25945;25946 26138;26139;26140;26141;26142 26142 5 DPVQLNLLYVQAR LRRKFFYSDQNVDSRDPVQLNLLYVQARDD SRDPVQLNLLYVQARDDILNGSHPVSFDKA R D P A R D 1 1 1 1 0 2 0 0 0 0 3 0 0 0 1 0 0 0 1 2 0 0 13 0 1527.8409 Q9Y490 Q9Y490 208 220 TLN1 Talin-1 no no 2 3.6119E-14 154.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 0.99514 0.84769 24.346 8 Median 1.0911 1.0716 NaN 1 1 Median 1.0599 0.86243 20.507 3 0 Plateau 0.55392 0.55486 NaN 1 0 Median 1.0811 0.94278 16.018 2 0 Median NaN NaN NaN 0 0 Median 0.84456 0.68269 NaN 1 0 Median 25277000 13606000 11672000 3133800 1500200 1633600 11961000 6061200 5899900 5715600 3648800 2066700 1520000 779030 740980 0 0 0 2947000 1616700 1330400 5093 4441 5302 25947;25948;25949;25950;25951;25952;25953;25954;25955 26143;26144;26145;26146;26147;26148;26149;26150;26151;26152 26144 10 DPVTDIPYATAR VREVCPVTHRPALYRDPVTDIPYATARAFK LYRDPVTDIPYATARAFKIIREAYKKYITA R D P A R A 2 1 0 2 0 0 0 0 0 1 0 0 0 0 2 0 2 0 1 1 0 0 12 0 1317.6565 Q15906 Q15906 303 314 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes yes 2 0.00026805 130.41 By MS/MS By MS/MS 1 2 0.69624 0.6866 28.235 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69624 0.6866 NaN 1 0 Median 0.8945 0.78018 38.543 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14240000 7765000 6474600 0 0 0 0 0 0 11783000 6368800 5414600 2456100 1396100 1060000 0 0 0 0 0 0 5094 2975 5303 25956;25957;25958 26153;26154 26153 2 DPVYTFSISQNPFPIENR PVEYLIIDITTTFPKDPVYTFSISQNPFPI YTFSISQNPFPIENRDVLGETQDFHSLATY K D P N R D 0 1 2 1 0 1 1 0 0 2 0 0 0 2 3 2 1 0 1 1 0 0 18 0 2123.0324 Q8TAT6;I3L283;I3L3I1 Q8TAT6 459 476 NPLOC4 Nuclear protein localization protein 4 homolog yes no 2 0.003404 30.438 By MS/MS By MS/MS By matching 1 1 1 0.57326 0.58091 16.215 3 Median 0.57326 0.58091 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50679 0.53178 NaN 1 0 Median 0.84969 0.72825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2481400 1527800 953610 955190 656700 298490 0 0 0 1266200 741620 524620 259940 129440 130500 0 0 0 0 0 0 5095 3456 5304 25959;25960;25961 26155;26156 26156 2 DPWYSTVGLLPPVR GCPPGVCDHGTGDRRDPWYSTVGLLPPVRA RDPWYSTVGLLPPVRAMSQRNLNAKTEQGP R D P V R A 0 1 0 1 0 0 0 1 0 0 2 0 0 0 3 1 1 1 1 2 0 0 14 0 1598.8457 A0A0U1RQL9;A0A0U1RQN3;A0A0U1RQS5;B3KNS4;A0A0U1RQV1 A0A0U1RQL9 28 41 hCG_2043597 yes no 2 0.0023891 43.282 By MS/MS 1 0.62802 0.63668 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62802 0.63668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 781700 443230 338480 0 0 0 0 0 0 781700 443230 338480 0 0 0 0 0 0 0 0 0 5096 301 5305 25962 26157 26157 1 DPYSGSTISLFQAMQK HEQLLSAEKAVTGYRDPYSGSTISLFQAMQ PYSGSTISLFQAMQKGLVLRQHGIRLLEAQ R D P Q K G 1 0 0 1 0 2 0 1 0 1 1 1 1 1 1 3 1 0 1 0 0 0 16 0 1771.8451 Q15149;H0YDN1 Q15149 3575 3590 PLEC Plectin yes no 2 2.1632E-10 112.13 By MS/MS 2 0.87213 0.87501 5.9484 2 Median 0.87213 0.87501 5.9484 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44225000 22834000 21391000 44225000 22834000 21391000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5097 2933 5306 25963;25964 26158;26159 26159 2 DPYTGQQISLFQAMQK HHKLLSAERAVTGYKDPYTGQQISLFQAMQ PYTGQQISLFQAMQKGLIVREHGIRLLEAQ K D P Q K G 1 0 0 1 0 4 0 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 16 0 1853.8982 Q15149;H0YDN1 Q15149 2916 2931 PLEC Plectin yes no 2 7.4344E-05 76.143 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0683 1.0736 18.836 4 Median 1.0575 1.058 NaN 1 0 Median 0.87472 0.76845 NaN 1 0 Median 1.0792 1.1787 NaN 1 0 Median 1.177 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12662000 5821700 6840000 8567900 3842300 4725600 1284600 631250 653390 2284800 1079400 1205400 524370 268740 255630 0 0 0 0 0 0 5098 2933 5307 25965;25966;25967;25968 26160;26161;26162 26160 3 DPYTGQSVSLFQALK HEKLLSAEKAVTGYRDPYTGQSVSLFQALK DPYTGQSVSLFQALKKGLIPREQGLRLLDA R D P L K K 1 0 0 1 0 2 0 1 0 0 2 1 0 1 1 2 1 0 1 1 0 0 15 0 1652.841 Q15149;H0YDN1 Q15149 3244 3258 PLEC Plectin yes no 2 1.2546E-05 85.958 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.0627 1.0589 9.6726 5 Median 1.0627 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94931 1.0226 NaN 1 0 Median 1.182 1.1013 NaN 1 0 Median 1.0951 1.1503 NaN 1 0 Median 1.0285 0.89251 NaN 1 0 Median 12756000 6263000 6492900 6016400 2838200 3178200 0 0 0 4562200 2364200 2198000 689720 325770 363950 1305100 644080 661050 182490 90797 91692 5099 2933 5308 25969;25970;25971;25972;25973 26163;26164;26165 26164 3 DPYTGQSVSLFQALKK HEKLLSAEKAVTGYRDPYTGQSVSLFQALK PYTGQSVSLFQALKKGLIPREQGLRLLDAQ R D P K K G 1 0 0 1 0 2 0 1 0 0 2 2 0 1 1 2 1 0 1 1 0 0 16 1 1780.9359 Q15149;H0YDN1 Q15149 3244 3259 PLEC Plectin yes no 2;3 1.2702E-07 88.441 By MS/MS By matching By MS/MS 2 1 1 0.95824 0.97516 25.738 4 Median 0.84431 0.91981 30.937 2 1 Median 0.87361 0.8307 NaN 1 0 Median 1.1214 1.2717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36327000 18214000 18113000 24247000 12512000 11735000 2533900 1230300 1303700 9545900 4471500 5074400 0 0 0 0 0 0 0 0 0 5100 2933 5309 25974;25975;25976;25977 26166;26167;26168;26169 26168 4 DQAEEEPNRIPSR KEEDVVTPKPGKRKRDQAEEEPNRIPSRSL KRDQAEEEPNRIPSRSLRRTKLNQESTAPK R D Q S R S 1 2 1 1 0 1 3 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 13 1 1539.7277 Q14676 Q14676 1867 1879 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.056533 14.687 By MS/MS By MS/MS 1 1 0.96021 1.027 13.93 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73672 0.93065 NaN 1 0 Median 1.2515 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3894600 2058700 1835900 0 0 0 0 0 0 3295000 1789200 1505800 599620 269540 330090 0 0 0 0 0 0 5101 2887 5310 25978;25979 26170;26171 26170 2 DQAIVSAVANR IYWQANLDRFHQHFRDQAIVSAVANRMDQT QHFRDQAIVSAVANRMDQTSSEIVRTMLRM R D Q N R M 3 1 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 11 0 1142.6044 E9PHH9;Q9BUI4 E9PHH9 248 258 POLR3C DNA-directed RNA polymerase III subunit RPC3 yes no 2 0.00029355 72.643 By MS/MS By MS/MS By matching 1 1 1 1.2933 1.153 8.8792 3 Median NaN NaN NaN 0 0 Median 1.3301 1.153 NaN 1 0 Median 1.2305 1.2969 NaN 1 1 Median 1.2933 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4763700 1943200 2820500 0 0 0 2571700 1195600 1376200 1649300 594850 1054500 542680 152820 389860 0 0 0 0 0 0 5102 931 5311 25980;25981;25982 26172;26173 26173 2 DQAVENILVSPVVVASSLGLVSLGGK RSAGLAFSLYQAMAKDQAVENILVSPVVVA VVVASSLGLVSLGGKATTASQAKAVLSAEQ K D Q G K A 2 0 1 1 0 1 1 3 0 1 4 1 0 0 1 4 0 0 0 6 0 0 26 0 2550.4269 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PLA6 P50454 61 86 SERPINH1 Serpin H1 yes no 2;3 0.0001777 28.212 By matching By MS/MS By matching 1 2 1 1.1833 1.1633 21.365 4 Median NaN NaN NaN 0 0 Median 1.7142 1.4579 NaN 1 0 Median 0.98352 0.97921 1.1275 2 0 Median NaN NaN NaN 0 0 Median 1.4121 1.3711 NaN 1 0 Median NaN NaN NaN 0 0 Median 5367100 2574700 2792500 0 0 0 94810 41595 53216 5015800 2429200 2586600 0 0 0 256580 103940 152640 0 0 0 5103 2414 5312 25983;25984;25985;25986 26174;26175 26175 2 DQDELNPYAAWR PDKVLRMLYVWALCRDQDELNPYAAWRLLD LCRDQDELNPYAAWRLLDISASSTEQIL__ R D Q W R L 2 1 1 2 0 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 12 0 1476.6634 O43615;M0QXM9 O43615 428 439 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.0023313 76.465 By MS/MS 1 1.0092 1.0934 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0092 1.0934 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3713900 1969600 1744300 0 0 0 0 0 0 3713900 1969600 1744300 0 0 0 0 0 0 0 0 0 5104 1577 5313 25987 26176 26176 1 DQDLEPGAPSMGAK GEIDCEDWIKKTTARDQDLEPGAPSMGAKS RDQDLEPGAPSMGAKSLCIPFKPLCELQPG R D Q A K S 2 0 0 2 0 1 1 2 0 0 1 1 1 0 2 1 0 0 0 0 0 0 14 0 1414.6398 P07814 P07814 1464 1477 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 7.8822E-09 109.24 By MS/MS By MS/MS By MS/MS 2 2 1 0.87619 0.8708 8.4755 5 Median 0.85953 0.83935 5.2021 2 1 Median 0.95519 0.84051 15.095 2 0 Median NaN NaN NaN 0 0 Median 0.98925 0.8951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46556000 24614000 21942000 32032000 16864000 15168000 12242000 6536300 5705400 0 0 0 2282500 1213400 1069000 0 0 0 0 0 0 5105 1892 5314 25988;25989;25990;25991;25992 26177;26178;26179;26180;26181;26182;26183;26184 26178 8 DQDNMQAELNR TQMLDQEELLASTRRDQDNMQAELNRLQAE STRRDQDNMQAELNRLQAENDASKEEVKEV R D Q N R L 1 1 2 2 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1332.5728 P33176 P33176 466 476 KIF5B Kinesin-1 heavy chain yes yes 2 3.4856E-06 157.66 By matching By MS/MS 1 3 1.0742 0.92072 13.942 3 Plateau 0.98227 0.9498 NaN 1 0 Median 0.96776 0.82299 15.87 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15076000 7125900 7950000 4790800 2398100 2392700 10285000 4727900 5557300 0 0 0 0 0 0 0 0 0 0 0 0 5106 2221 5315;5316 25993;25994;25995;25996 26185;26186;26187;26188 26186 959 4 DQEALEAVK NKQAEVKKMDSGYRKDQEALEAVKRLKEKL DSGYRKDQEALEAVKRLKEKLEAEMKKLNY K D Q V K R 2 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1001.5029 O95347 O95347 447 455 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0029277 68.625 By matching By MS/MS 1 1 0.80857 0.7758 23.49 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61162 0.65707 NaN 1 0 Median 1.0689 0.91598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4774300 2644000 2130300 0 0 0 0 0 0 1742000 1158700 583260 3032300 1485300 1547000 0 0 0 0 0 0 5107 1766 5317 25997;25998 26189 26189 1 DQEALEAVKR NKQAEVKKMDSGYRKDQEALEAVKRLKEKL SGYRKDQEALEAVKRLKEKLEAEMKKLNYE K D Q K R L 2 1 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1157.6041 O95347 O95347 447 456 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 9.6349E-05 133.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1.0463 1.1628 25.221 7 Median 1.0892 1.1337 NaN 1 0 Median 1.0235 0.94839 NaN 1 0 Median 1.045 1.1838 NaN 1 0 Median 1.0189 0.97915 NaN 1 0 Median 1.3685 1.5362 39.389 2 0 Median 1.4609 1.2857 NaN 1 0 Median 33279000 16305000 16974000 5633300 2776900 2856500 13289000 6801500 6487800 6576800 3259900 3316900 4838700 2279900 2558800 2448700 960730 1487900 492390 226560 265840 5108 1766 5318 25999;26000;26001;26002;26003;26004;26005 26190;26191;26192;26193;26194;26195;26196;26197;26198;26199;26200 26196 11 DQEDVVSQTESLK VETDYCLLLALPCGRDQEDVVSQTESLKAA GRDQEDVVSQTESLKAAFITYLQAKQAAGI R D Q L K A 0 0 0 2 0 2 2 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1476.6944 Q96T58 Q96T58 3584 3596 SPEN Msx2-interacting protein yes yes 2 1.9408E-05 94.616 By MS/MS 1 1.1677 1.2652 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1677 1.2652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3427900 1710600 1717300 0 0 0 0 0 0 3427900 1710600 1717300 0 0 0 0 0 0 0 0 0 5109 3741 5319 26006 26201 26201 1 DQEEGKNHMYLFEGK QWVSDALPAAEGGSRDQEEGKNHMYLFEGK DQEEGKNHMYLFEGKDYSKEPSKEDRKSFE R D Q G K D 0 0 1 1 0 1 3 2 1 0 1 2 1 1 0 0 0 0 1 0 0 0 15 1 1823.8148 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C179 Q86WJ1 564 578 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 3;4 0.00028673 45.014 By MS/MS By matching 2 1 1.061 1.2121 19.217 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0494 1.1999 1.4246 2 0 Median 0.90343 0.86058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11244000 5401500 5842000 0 0 0 0 0 0 9944500 4750200 5194300 1299100 651350 647770 0 0 0 0 0 0 5110 3293 5320 26007;26008;26009 26202;26203 26202 2 DQELYFFHELSPGSCFFLPK FQEEAKNRDHRKIGRDQELYFFHELSPGSC FFHELSPGSCFFLPKGAYIYNALIEFIRSE R D Q P K G 0 0 0 1 1 1 2 1 1 0 3 1 0 4 2 2 0 0 1 0 0 0 20 0 2460.146 P26639 P26639 329 348 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 0.058242 7.9922 By matching By MS/MS By matching 1 1 1 0.97332 1.0104 9.5047 3 Median 0.99188 1.0104 NaN 1 0 Median 0.97332 0.87142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92584 1.0405 NaN 1 0 Median NaN NaN NaN 0 0 Median 1897200 1045800 851400 587500 261410 326090 1068600 639420 429220 0 0 0 0 0 0 241050 144960 96091 0 0 0 5111 2147 5321 26010;26011;26012 26204 26204 1 DQEPIPQNIDR LLAWIQWAETTLIQRDQEPIPQNIDRVKAL LIQRDQEPIPQNIDRVKALIAEHQTFMEEM R D Q D R V 0 1 1 2 0 2 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 11 0 1323.6419 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314 H3BPE1 7006 7016 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.01075 61.78 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5112 1220 5322 26013 26205 26205 1 DQEVLLQTGR DAGLISPLVQLLNSKDQEVLLQTGRALGNI LLNSKDQEVLLQTGRALGNICYDSHEGRSA K D Q G R A 0 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1157.6041 P52306;D6RHZ7;D6RHH8 P52306 102 111 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 2 0.0068526 62.823 By MS/MS 1 0.34854 0.30146 NaN 1 Median NaN NaN NaN 0 0 Median 0.34854 0.30146 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12143000 9216600 2926400 0 0 0 12143000 9216600 2926400 0 0 0 0 0 0 0 0 0 0 0 0 5113 2451 5323 26014 26206 26206 1 DQEWYDAEIAR VMKEAVSTPSRMAHRDQEWYDAEIARKLQE MAHRDQEWYDAEIARKLQEEELLATQVDMR R D Q A R K 2 1 0 2 0 1 2 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 11 0 1394.6103 Q8IVM0 Q8IVM0 170 180 CCDC50 Coiled-coil domain-containing protein 50 yes yes 2 0.00042157 70.028 By MS/MS By matching 1 1 1.6394 1.4853 1.5971 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.54 1.5022 NaN 1 0 Median 1.7452 1.4687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2207000 796980 1410000 0 0 0 0 0 0 2106800 752660 1354100 100220 44318 55906 0 0 0 0 0 0 5114 3318 5324 26015;26016 26207 26207 1 DQFLDTLQAHGHDVNSFVR VLSGDQLEAAARDTRDQFLDTLQAHGHDVN DTLQAHGHDVNSFVRSRVLQLFTRIVQQKA R D Q V R S 1 1 1 3 0 2 0 1 2 0 2 0 0 2 0 1 1 0 0 2 0 0 19 0 2198.0505 Q15021;E7EN77 Q15021 363 381 NCAPD2 Condensin complex subunit 1 yes no 3 3.0908E-08 74.519 By MS/MS By MS/MS By matching By matching 2 1 2 1 1.1133 1.0148 21.987 6 Median 1.2062 1.1898 16.27 2 0 Median NaN NaN NaN 0 0 Median 1.1457 1.2603 NaN 1 0 Median 1.096 0.96351 1.1088 2 0 Median NaN NaN NaN 0 0 Median 0.85403 0.72435 NaN 1 0 Median 19490000 8985700 10505000 13995000 6288000 7706600 0 0 0 4964900 2441400 2523500 396300 193250 203060 0 0 0 134400 63076 71319 5115 2915 5325 26017;26018;26019;26020;26021;26022 26208;26209 26208 2 DQFTTTEVNMAR TKNLDSLEEDLDFLRDQFTTTEVNMARVYN FLRDQFTTTEVNMARVYNWDVKRRNKDDST R D Q A R V 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 3 0 0 1 0 0 12 0 1411.6402 P61758 P61758 167 178 VBP1 Prefoldin subunit 3 yes yes 2 1.7839E-10 135.55 By MS/MS By MS/MS 1 1 1.1931 1.0701 37.948 2 Median 0.8616 0.81822 NaN 1 1 Median 1.6521 1.3994 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21048000 12246000 8801400 18112000 11078000 7034400 2935400 1168300 1767000 0 0 0 0 0 0 0 0 0 0 0 0 5116 2561 5326 26023;26024 26210;26211 26210 2 DQGGELLSLR MGKYGEDSKLIYDLKDQGGELLSLRYDLTV IYDLKDQGGELLSLRYDLTVPFARYLAMNK K D Q L R Y 0 1 0 1 0 1 1 2 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1086.5669 P12081;B3KWE1;P49590;A0A2R8Y5P7;A0A2R8Y3N3;A0A2R8Y6I1;D6RJE6;A0A2R8Y5E8;A0A2R8Y4X6 P12081 119 128 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 2 0.00040727 102.07 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.2143 1.0791 8.0571 6 Median 1.2289 1.2142 10.186 2 0 Median 1.2961 1.0939 NaN 1 0 Median 1.0604 1.0605 0.44163 2 1 Median 1.2426 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51158000 23002000 28155000 16736000 7997900 8738200 6985500 2596500 4389000 20859000 9569900 11289000 6577300 2838100 3739200 0 0 0 0 0 0 5117 1975 5327 26025;26026;26027;26028;26029;26030 26212;26213;26214;26215;26216 26212 5 DQGGFGDRNEYGSR VQQACEMVMDILRERDQGGFGDRNEYGSRI RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG R D Q S R I 0 2 1 2 0 1 1 4 0 0 0 0 0 1 0 1 0 0 1 0 0 0 14 1 1556.6604 Q92945;A0A087WTP3;M0R0I5 Q92945 307 320 KHSRP Far upstream element-binding protein 2 yes no 2;3 0.00018986 66.246 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1 2 1.1248 1.0402 11.764 11 Median 0.94093 0.96474 NaN 1 0 Median 1.2996 1.2858 NaN 1 0 Median 0.9589 1.108 5.0608 3 0 Median 1.1673 1.0343 18.322 3 0 Median 0.95736 1.0402 NaN 1 0 Median 1.2259 1.096 13.751 2 0 Median 44796000 21749000 23047000 3390000 1818400 1571700 1613500 554910 1058500 26409000 13187000 13222000 8782500 3873200 4909300 2573000 1422700 1150400 2027900 892300 1135600 5118 3568 5328 26031;26032;26033;26034;26035;26036;26037;26038;26039;26040;26041 26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231 26228 15 DQGTYEDYVEGLR FEHFLPMLQTVAKNKDQGTYEDYVEGLRVF NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K D Q L R V 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;G3V1Y7;F8VPF3;F8VZU9;F8W180;H0YI43 F8W1R7 82 94 MYL6 Myosin light polypeptide 6 yes no 2 4.4558E-05 103.34 By MS/MS 1 0.75154 0.76229 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75154 0.76229 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6649800 3672400 2977400 0 0 0 0 0 0 6649800 3672400 2977400 0 0 0 0 0 0 0 0 0 5119 1082 5329 26042 26232 26232 1 DQIIELDQTGNQLK IEEHKVFANEVNAHRDQIIELDQTGNQLKF RDQIIELDQTGNQLKFLSQKQDVVLIKNLL R D Q L K F 0 0 1 2 0 3 1 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 14 0 1613.8261 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6598 6611 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 2.6702E-23 194.17 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0949 1.0586 16.473 4 Median 0.90438 0.90733 NaN 1 0 Median 1.246 1.0883 NaN 1 0 Median 0.96211 1.0296 NaN 1 0 Median 1.4533 1.3467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36385000 17019000 19366000 21360000 10590000 10771000 5473900 2188200 3285700 8998600 3977000 5021600 552380 263800 288590 0 0 0 0 0 0 5120 1220 5330 26043;26044;26045;26046 26233;26234;26235;26236 26234 4 DQILLEK LKRGGRKVENEDMNKDQILLEKEAELRRMQ VENEDMNKDQILLEKEAELRRMQEMIARMQ K D Q E K E 0 0 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 857.48583 Q15019;B5MCX3;H7C2Y0 Q15019 319 325 SEPT2 Septin-2 yes no 2 0.064364 47.082 By MS/MS 1 1.0669 1.1893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0669 1.1893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2041200 962460 1078700 0 0 0 0 0 0 2041200 962460 1078700 0 0 0 0 0 0 0 0 0 5121 2914 5331 26047 26237 26237 1 DQISVLPNEQDLVR LSPVYQSSNDSDAYKDQISVLPNEQDLVRE KDQISVLPNEQDLVREEAQKMSSLLPTMWL K D Q V R E 0 1 1 2 0 2 1 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 14 0 1624.842 A0A087X2D8;O60271;H0YBS5;H0Y981 A0A087X2D8 937 950 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.033287 40.727 By MS/MS 1 1.0346 1.0471 NaN 1 Median 1.0346 1.0471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2135000 1228800 906180 2135000 1228800 906180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5122 134 5332 26048 26238 26238 1 DQITAGNAAR YELLDSPGKVLLQSKDQITAGNAARKNHLE LLQSKDQITAGNAARKNHLEGKAAISNKIT K D Q A R K 3 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1015.5047 P22234;E9PBS1 P22234 37 46 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0033507 57.047 By MS/MS By MS/MS By matching 2 2 1 1.2348 1.0948 11.784 5 Median 1.1221 1.1137 12.23 2 0 Median 1.2238 1.0513 5.7439 2 0 Median 1.3763 1.3296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6847800 2971400 3876400 1079800 459280 620520 5329700 2325100 3004600 438250 187020 251230 0 0 0 0 0 0 0 0 0 5123 909 5333 26049;26050;26051;26052;26053 26239;26240;26241;26242;26243;26244 26242 6 DQIVDLTVGNNK QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K D Q N K T 0 0 2 2 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1314.6779 P35527;CON__P35527 P35527 213 224 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.001773 79.974 By MS/MS By MS/MS 2 1 0.17961 0.15708 84.402 3 Median NaN NaN NaN 0 0 Median 0.24483 0.20926 40.563 2 2 Median NaN NaN NaN 0 0 Median 0.056147 0.052916 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3710800 3297100 413690 0 0 0 2729300 2369600 359710 0 0 0 981450 927480 53976 0 0 0 0 0 0 + 5124 2242 5334 26054;26055;26056 26245;26246;26247 26245 3 DQKADQDRLDLEER KRAATLAQELEKFNRDQKADQDRLDLEERK RDQKADQDRLDLEERKKVETEAKIKQKLRE R D Q E R K 1 2 0 4 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 14 2 1729.8231 Q14683;G8JLG1 Q14683 399 412 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.038739 17.917 By MS/MS By matching 1 1 1.123 1.2491 47.032 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79456 0.89572 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5872 1.7419 NaN 1 0 Median NaN NaN NaN 0 0 Median 6765100 2933700 3831500 0 0 0 0 0 0 4476100 2067000 2409100 0 0 0 2289100 866730 1422400 0 0 0 5125 2889 5335 26057;26058 26248 26248 1 DQLIYNLLK ______________________________ ______________________________ K D Q L K E 0 0 1 1 0 1 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 9 0 1118.6336 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5H8H6;F5GXC7;F5GWW2;F5GXU1 P00338 6 14 LDHA L-lactate dehydrogenase A chain yes no 2 0.0015549 80.229 By MS/MS By MS/MS By MS/MS By matching By matching 5 4 1 1 1 1.1584 1.0781 12.216 12 Median 1.1908 1.1225 11.659 5 0 Median 1.0917 0.94442 6.4066 4 0 Median 1.2987 1.2499 NaN 1 0 Median 1.127 0.96163 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.339 1.1022 NaN 1 0 Median 2158400000 1002600000 1155900000 105960000 45671000 60286000 2037000000 950130000 1086900000 12317000 5384200 6932400 798470 398830 399640 0 0 0 2303300 985580 1317700 5126 1813 5336 26059;26060;26061;26062;26063;26064;26065;26066;26067;26068;26069;26070 26249;26250;26251;26252;26253;26254;26255 26250 7 DQLIYNLLKEEQTPQNK ______________________________ LIYNLLKEEQTPQNKITVVGVGAVGMACAI K D Q N K I 0 0 2 1 0 3 2 0 0 1 3 2 0 0 1 0 1 0 1 0 0 0 17 1 2073.0742 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8;F5GZQ4;F5H8H6;F5GXC7;F5GWW2;F5GXU1 P00338 6 22 LDHA L-lactate dehydrogenase A chain yes no 2;3 5.8903E-06 77.324 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.93929 0.91085 21.246 7 Median 1.0032 0.97499 9.6237 2 0 Median 0.90147 0.81185 3.4408 2 0 Median 1.1174 1.1702 9.5104 2 0 Median 0.7664 0.67296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71534000 35041000 36493000 27839000 13685000 14154000 26270000 13106000 13164000 17186000 8136500 9049500 238860 113190 125670 0 0 0 0 0 0 5127 1813 5337 26071;26072;26073;26074;26075;26076;26077 26256;26257;26258;26259;26260;26261;26262;26263;26264;26265;26266 26257 11 DQLLPNLR ______________________________ RLSAEERDQLLPNLRAVGWNELEGRDAIFK R D Q L R A 0 1 1 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 967.54508 P61457 P61457 14 21 PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes yes 2 2.4085E-06 124.37 By MS/MS By MS/MS By matching 1 3 1 0.98507 0.83569 11.443 3 Plateau NaN NaN NaN 0 0 Median 1.005 0.83282 0.58863 2 1 Median NaN NaN NaN 0 0 Median 0.84008 0.68317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22418000 9700200 12717000 0 0 0 22224000 9598600 12625000 0 0 0 193760 101560 92195 0 0 0 0 0 0 5128 2558 5338 26078;26079;26080;26081;26082 26267;26268;26269;26270;26271;26272 26271 6 DQLQTFSEEHPVLLTEAPLNPR DWNDMERIWQYVYSKDQLQTFSEEHPVLLT EEHPVLLTEAPLNPRKNRERAAEVFFETFN K D Q P R K 1 1 1 1 0 2 3 0 1 0 4 0 0 1 3 1 2 0 0 1 0 0 22 0 2533.2813 P61163;R4GMT0;A0A1B0GVS3 P61163 97 118 ACTR1A Alpha-centractin yes no 3 2.3317E-18 104.63 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.73878 0.67927 3.4532 4 Median 0.67225 0.66814 NaN 1 0 Median 0.8119 0.70879 NaN 1 0 Median 0.59654 0.6558 NaN 1 0 Median 0.82084 0.69057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95136000 55449000 39687000 8146000 4717600 3428400 7546700 4034100 3512500 68739000 41058000 27681000 10704000 5638500 5065300 0 0 0 0 0 0 5129 2547 5339 26083;26084;26085;26086 26273;26274;26275;26276;26277;26278;26279;26280 26277 8 DQLQTFSEEHPVLLTEAPLNPSK DWNDMERIWQYVYSKDQLQTFSEEHPVLLT EHPVLLTEAPLNPSKNREKAAEVFFETFNV K D Q S K N 1 0 1 1 0 2 3 0 1 0 4 1 0 1 3 2 2 0 0 1 0 0 23 0 2592.3071 P42025 P42025 97 119 ACTR1B Beta-centractin yes yes 3 5.2371E-05 34.217 By MS/MS 1 0.35623 0.38029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35623 0.38029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4141200 3128700 1012500 0 0 0 0 0 0 4141200 3128700 1012500 0 0 0 0 0 0 0 0 0 5130 2304 5340 26087 26281;26282 26281 2 DQLSVLENGVDIVVGTPGR PKLRELLIIGGVAARDQLSVLENGVDIVVG VLENGVDIVVGTPGRLDDLVSTGKLNLSQV R D Q G R L 0 1 1 2 0 1 1 3 0 1 2 0 0 0 1 1 1 0 0 4 0 0 19 0 1967.0324 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 250 268 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 9.7895E-08 76.262 By MS/MS By matching 1 1 1.1544 0.97666 17.37 2 Median NaN NaN NaN 0 0 Median 1.2718 1.1043 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0478 0.86378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416900 1261100 1155800 0 0 0 2299900 1209200 1090700 0 0 0 116920 51918 65003 0 0 0 0 0 0 5131 135 5341 26088;26089 26283 26283 1 DQMQQQLNDYEQLLDVK RRMLTDKEREMAEIRDQMQQQLNDYEQLLD MQQQLNDYEQLLDVKLALDMEISAYRKLLE R D Q V K L 0 0 1 3 0 5 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 17 0 2106.9892 P20700;E9PBF6 P20700 351 367 LMNB1 Lamin-B1 yes no 2;3 0.0061028 28.327 By matching By MS/MS By MS/MS By matching 1 1 3 2 0.85675 0.88538 29.364 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61782 0.64088 NaN 1 0 Median 1.4931 1.2835 NaN 1 0 Median 0.8292 0.86271 14 3 0 Plateau 1.4052 1.1917 14.084 2 0 Median 11375000 5870400 5504300 0 0 0 0 0 0 892510 507510 385000 714440 262790 451650 9153200 4835400 4317800 614600 264760 349840 5132 2084 5342 26090;26091;26092;26093;26094;26095;26096 26284;26285;26286;26287 26284 4 DQMSHLFNVAHTLR SLVGQHILSVQQFTKDQMSHLFNVAHTLRM KDQMSHLFNVAHTLRMMVQKERSLDILKGK K D Q L R M 1 1 1 1 0 1 0 0 2 0 2 0 1 1 0 1 1 0 0 1 0 0 14 0 1667.8202 F8VPD4;P27708;H7BZB3 F8VPD4 1872 1885 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3;4 3.7278E-06 87.519 By MS/MS By matching 4 1 1.289 1.248 15.236 5 Median 1.3171 1.2694 17.592 4 1 Median NaN NaN NaN 0 0 Median 1.066 1.1839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42033000 19078000 22955000 40551000 18292000 22259000 0 0 0 1482200 786080 696170 0 0 0 0 0 0 0 0 0 5133 1057 5343 26097;26098;26099;26100;26101 26288;26289;26290;26291;26292;26293 26291 6 DQNILLGTTYR NNVSSYLSKNILAFRDQNILLGTTYRIIAN LAFRDQNILLGTTYRIIANALSSEPACLAE R D Q Y R I 0 1 1 1 0 1 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 11 0 1292.6725 P78527 P78527 3325 3335 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.691E-30 206.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 4 3 1 1.2832 1.1705 35.518 15 Median 0.63851 0.64418 65.809 2 0 Median 1.4399 1.1526 NaN 1 0 Median 1.1738 1.2852 20.406 4 1 Median 1.8247 1.5794 17.483 4 3 Median 1.0881 1.1102 10.866 3 0 Plateau 1.4651 1.2145 NaN 1 0 Median 429290000 209900000 219390000 83802000 41551000 42251000 18951000 7430100 11521000 274070000 136130000 137950000 16224000 8054000 8170500 30956000 14545000 16411000 5283100 2195600 3087500 5134 2647 5344 26102;26103;26104;26105;26106;26107;26108;26109;26110;26111;26112;26113;26114;26115;26116 26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304;26305;26306;26307;26308;26309;26310;26311;26312;26313;26314;26315;26316 26300 23 DQNTVETLQR RIQDKHKKLPEELGRDQNTVETLQRMHTTF EELGRDQNTVETLQRMHTTFEHDIQALGTQ R D Q Q R M 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1202.5891 Q01082;A0A087WUZ3 Q01082 1835 1844 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 2.6699E-15 182.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1.008 0.97575 21.503 8 Median NaN NaN NaN 0 0 Median 1.2292 1.0231 11.058 2 0 Median 0.92568 1.0187 1.742 2 2 Median 1.2199 1.0665 19.694 2 0 Median NaN NaN NaN 0 0 Median 0.84456 0.69899 19.412 2 0 Median 23578000 11787000 11791000 0 0 0 7911600 3814700 4096900 11204000 5783400 5420800 2241500 986960 1254500 0 0 0 2221000 1202200 1018800 5135 2681 5345 26117;26118;26119;26120;26121;26122;26123;26124;26125 26317;26318;26319;26320;26321;26322;26323;26324;26325;26326;26327 26320 11 DQPPNSVEGLLNALR KTSKIDMKGCIKVLKDQPPNSVEGLLNALR DQPPNSVEGLLNALRYTTKHLNDETTSKQI K D Q L R Y 1 1 2 1 0 1 1 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 15 0 1621.8424 Q9NUQ9 Q9NUQ9 290 304 FAM49B Protein FAM49B yes yes 2 0.049451 23.236 By MS/MS By matching 1 1 0.78386 0.70757 4.8556 2 Median NaN NaN NaN 0 0 Median 0.80383 0.68369 NaN 1 0 Median 0.76438 0.73229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1767800 935220 832600 0 0 0 834750 418680 416070 933060 516530 416530 0 0 0 0 0 0 0 0 0 5136 4120 5346 26126;26127 26328 26328 1 DQQEAALVDMVNDGVEDLR TILRHLGRTLGLYGKDQQEAALVDMVNDGV AALVDMVNDGVEDLRCKYISLIYTNYEAGK K D Q L R C 2 1 1 4 0 2 2 1 0 0 2 0 1 0 0 0 0 0 0 3 0 0 19 0 2115.9743 P09211;A8MX94 P09211 83 101 GSTP1 Glutathione S-transferase P yes no 2;3 3.11E-18 122.97 By MS/MS By MS/MS 4 4 1.0844 0.98879 2.6294 8 Median 1.0275 0.97491 2.8357 4 0 Median 1.1667 0.99513 2.526 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63479000 29247000 34232000 49949000 23287000 26662000 13530000 5959900 7570000 0 0 0 0 0 0 0 0 0 0 0 0 5137 1912 5347;5348 26128;26129;26130;26131;26132;26133;26134;26135 26329;26330;26331;26332;26333;26334;26335;26336;26337 26329 690 9 DQQLVYSAGVYR IDLQELQGYLQKKVRDQQLVYSAGVYRLPK KVRDQQLVYSAGVYRLPKNCS_________ R D Q Y R L 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 2 2 0 0 12 0 1397.6939 Q9UJX6 Q9UJX6 805 816 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2 2.5304E-06 115.78 By MS/MS 1 1.0175 1.0857 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0857 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5291200 2621600 2669600 0 0 0 0 0 0 5291200 2621600 2669600 0 0 0 0 0 0 0 0 0 5138 4303 5349 26136 26338 26338 1 DQQPGTFLLR IMGFISKERERALLKDQQPGTFLLRFSESS RALLKDQQPGTFLLRFSESSREGAITFTWV K D Q L R F 0 1 0 1 0 2 0 1 0 0 2 0 0 1 1 0 1 0 0 0 0 0 10 0 1173.6142 P42224;J3KPM9 P42224 593 602 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.046332 29.162 By MS/MS 1 1.5101 1.4671 NaN 1 Median 1.5101 1.4671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3306400 1737600 1568900 3306400 1737600 1568900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5139 2308 5350 26137 26339 26339 1 DQQVLDVK TNASDQQNEPQLGLKDQQVLDVKSYARLFS EPQLGLKDQQVLDVKSYARLFSKSIETLRV K D Q V K S 0 0 0 2 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 943.49746 Q9UBT2;K7ESK7 Q9UBT2 309 316 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.0059615 73.248 By MS/MS By MS/MS By matching 1 1 1 0.98735 0.88954 10.55 3 Median 0.94719 0.88954 NaN 1 0 Median 0.98735 0.86547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2848 1.0517 NaN 1 0 Median 9182900 4689600 4493300 5136600 2656300 2480300 3765600 1903000 1862500 0 0 0 0 0 0 0 0 0 280730 130240 150490 5140 4247 5351 26138;26139;26140 26340;26341;26342 26342 3 DQREEELGEYYMK DEDRSGARRLQNLWRDQREEELGEYYMKKY WRDQREEELGEYYMKKYAKSSVGETVYGGS R D Q M K K 0 1 0 1 0 1 4 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 13 1 1688.7352 O00267;M0QYL9 O00267 131 143 SUPT5H Transcription elongation factor SPT5 yes no 3 0.022325 23.456 By matching By matching By MS/MS By matching 1 1 1 1 1.1181 1.1215 17.976 4 Median 1.1002 1.14 NaN 1 0 Median 1.1363 1.1033 NaN 1 0 Median 0.70022 0.79316 NaN 1 0 Median 1.2055 1.1585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8283100 4005800 4277300 1844400 834960 1009500 1798100 805420 992670 4190400 2152900 2037500 450190 212520 237660 0 0 0 0 0 0 5141 1452 5352 26141;26142;26143;26144 26343 26343 1 DQSAVVVQGLPEGVAFK GKSTVVPVPYEKMLRDQSAVVVQGLPEGVA SAVVVQGLPEGVAFKHPENYDLATLKWILE R D Q F K H 2 0 0 1 0 2 1 2 0 0 1 1 0 1 1 1 0 0 0 4 0 0 17 0 1742.9203 P78347;A0A494C1K3 P78347 144 160 GTF2I General transcription factor II-I yes no 2 5.5714E-12 128.68 By MS/MS By matching By matching 4 3 1 0.98528 0.83188 21.919 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71243 0.72039 31.079 4 1 Median 1.0933 0.91367 8.2285 3 0 Plateau NaN NaN NaN 0 0 Median 1.1257 0.93773 NaN 1 0 Median 41812000 23872000 17939000 0 0 0 0 0 0 40446000 23325000 17122000 944440 370150 574290 0 0 0 420810 177670 243140 5142 2642 5353 26145;26146;26147;26148;26149;26150;26151;26152 26344;26345;26346;26347;26348 26344 5 DQSSWQNSDASQEVGGHQER SPSTAHVPDGALGQRDQSSWQNSDASQEVG QNSDASQEVGGHQERQQAGAQGPGSADLED R D Q E R Q 1 1 1 2 0 4 2 2 1 0 0 0 0 0 0 4 0 1 0 1 0 0 20 0 2243.9428 Q9C0C2 Q9C0C2 1044 1063 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 3 0.014578 24.548 By MS/MS 2 1.0896 1.0809 21.744 2 Median 1.0896 1.0809 21.744 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5195600 2366600 2829000 5195600 2366600 2829000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5143 3903 5354 26153;26154 26349;26350 26349 2 DQSTYISAIR EELWLDGNSLCDTFRDQSTYISAIRERFPK CDTFRDQSTYISAIRERFPKLLRLDGHELP R D Q I R E 1 1 0 1 0 1 0 0 0 2 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1152.5775 Q9UBU9;E9PIN3 Q9UBU9 333 342 NXF1 Nuclear RNA export factor 1 yes no 2 9.1104E-06 153.08 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.89675 0.85769 15.767 5 Median NaN NaN NaN 0 0 Median 0.51404 0.68867 NaN 1 0 Median 1.025 1.0413 NaN 1 0 Median 0.96459 0.86623 1.4007 2 0 Median NaN NaN NaN 0 0 Median 0.89675 0.75299 NaN 1 0 Median 16756000 7342800 9412800 0 0 0 586310 364120 222190 14192000 6009200 8182600 1731400 846650 884730 0 0 0 246080 122870 123220 5144 4249 5355 26155;26156;26157;26158;26159 26351;26352;26353 26351 3 DQTDDQVTIDSALATQK VDIQLKYFDLGLPNRDQTDDQVTIDSALAT TDDQVTIDSALATQKYSVAVKCATITPDEA R D Q Q K Y 2 0 0 4 0 3 0 0 0 1 1 1 0 0 0 1 3 0 0 1 0 0 17 0 1847.8749 P48735 P48735 90 106 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 2.0884E-05 62.924 By matching By MS/MS 2 1 2.4732 2.1086 45.79 3 Median NaN NaN NaN 0 0 Median 2.5905 2.2603 9.8261 2 0 Median 1.0515 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7522100 3914100 3608000 0 0 0 1569700 718500 851150 5952400 3195600 2756800 0 0 0 0 0 0 0 0 0 5145 2367 5356 26160;26161;26162 26354;26355 26354 2 DQTIVDPFSSK MYIKQVIIQGFRSYRDQTIVDPFSSKHNVI RSYRDQTIVDPFSSKHNVIVGRNGSGKSNF R D Q S K H 0 0 0 2 0 1 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 11 0 1235.6034 Q9UQE7 Q9UQE7 16 26 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.039759 28.013 By matching By MS/MS By matching By matching 1 1 2 3 1.0681 0.97567 59.727 7 Median NaN NaN NaN 0 0 Median 0.20117 0.20657 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0882 0.91211 NaN 1 0 Median 1.019 1.0742 7.0315 2 0 Median 1.2197 1.0484 19.055 3 0 Plateau 7290900 3798100 3492900 0 0 0 1061600 767300 294260 0 0 0 794280 373660 420620 4210300 2034900 2175400 1224800 622190 602600 5146 4362 5357 26163;26164;26165;26166;26167;26168;26169 26356 26356 1 DQTKPTPLILDEQGR NLHAMGIAPPKVELKDQTKPTPLILDEQGR DQTKPTPLILDEQGRTVDATGKEIELTHRM K D Q G R T 0 1 0 2 0 2 1 1 0 1 2 1 0 0 2 0 2 0 0 0 0 0 15 1 1709.8948 O43395 O43395 249 263 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 3 0.00029333 44.807 By MS/MS By MS/MS 2 1 0.76109 0.863 8.222 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73867 0.81074 8.8354 2 0 Median 0.94296 0.88937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23296000 12795000 10501000 0 0 0 0 0 0 20209000 11345000 8864200 3087300 1450200 1637100 0 0 0 0 0 0 5147 1569 5358 26170;26171;26172 26357;26358;26359;26360 26360 4 DQTPDENDQVIVK NELQNLTAAEVVVPRDQTPDENDQVIVKII PRDQTPDENDQVIVKIIGHFYASQMAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 1 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1499.7104 Q9NZI8 Q9NZI8 526 538 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 6.6201E-07 125.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 4 1.013 0.88895 18.26 11 Median 0.83413 0.77379 NaN 1 0 Median 1.013 0.84423 NaN 1 0 Median 1.0276 1.0252 NaN 1 0 Median 1.0817 0.90613 13.457 2 0 Median 1.1553 1.1395 23.733 2 1 Median 1.0191 0.8461 19.981 4 1 Median 163160000 78462000 84700000 46756000 25055000 21702000 29098000 14331000 14767000 24024000 11716000 12307000 21139000 9204400 11934000 25078000 11470000 13608000 17067000 6685300 10381000 5148 4188 5359 26173;26174;26175;26176;26177;26178;26179;26180;26181;26182;26183 26361;26362;26363;26364;26365;26366;26367;26368;26369;26370;26371;26372;26373;26374;26375;26376;26377;26378 26373 18 DQTPDENDQVVVK NELQNLSSAEVVVPRDQTPDENDQVVVKIT PRDQTPDENDQVVVKITGHFYACQVAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1485.6947 O00425 O00425 526 538 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.9029E-05 98.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1 1.1105 0.93891 24.694 9 Median 0.76621 0.71797 NaN 1 0 Median 1.1147 0.93891 NaN 1 0 Median 0.65873 0.6979 NaN 1 1 Median 1.0473 0.87858 4.8539 2 0 Median 1.2058 1.2407 5.9164 3 3 Median 1.6106 1.3361 NaN 1 0 Median 47389000 22513000 24876000 14296000 7554800 6741300 7221700 3254000 3967700 4716000 2704800 2011200 2811300 1194900 1616400 15553000 6858700 8694300 2790900 945470 1845400 5149 1462 5360 26184;26185;26186;26187;26188;26189;26190;26191;26192 26379;26380;26381;26382;26383;26384;26385;26386;26387;26388;26389;26390 26379 12 DQTPDENEEVIVR NELQNLTSAEVIVPRDQTPDENEEVIVRII PRDQTPDENEEVIVRIIGHFFASQTAQRKI R D Q V R I 0 1 1 2 0 1 3 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 13 0 1542.7162 F8W930;Q9Y6M1 F8W930 554 566 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 7.621E-10 169.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 0.92426 0.79631 14.202 10 Median 0.76165 0.71921 NaN 1 0 Median 0.96765 0.8382 11.35 2 2 Median 0.85893 0.89746 14.133 2 0 Median 0.8258 0.69245 NaN 1 0 Median 0.97849 1.0036 2.6764 2 1 Median 0.92188 0.77198 1.6095 2 0 Median 61600000 32566000 29034000 23393000 13768000 9625000 9316100 4718800 4597200 8314300 3783800 4530600 6112200 3397600 2714600 9466900 4396100 5070800 4996900 2501300 2495600 5150 1088 5361 26193;26194;26195;26196;26197;26198;26199;26200;26201;26202 26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401;26402;26403;26404 26391 14 DQTVIQNTDGNNNEAWAK AFRCLVEKGDVAFVKDQTVIQNTDGNNNEA VIQNTDGNNNEAWAKNLKKENFEVLCKDGT K D Q A K N 2 0 4 2 0 2 1 1 0 1 0 1 0 0 0 0 2 1 0 1 0 0 18 0 2016.9137 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 561 578 yes no 2;3 5.1159E-25 138.42 By MS/MS By MS/MS 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30272000 30272000 0 26185000 26185000 0 4087100 4087100 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5151 769 5362 26203;26204;26205;26206;26207 26405;26406;26407;26408;26409 26407 5 DQVAIHEAMEQQTISITK NGVCCIDEFDKMDVRDQVAIHEAMEQQTIS AIHEAMEQQTISITKAGVKATLNARTSILA R D Q T K A 2 0 0 1 0 3 2 0 1 3 0 1 1 0 0 1 2 0 0 1 0 0 18 0 2041.015 Q14566 Q14566 469 486 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 4.219E-13 152.34 By MS/MS By matching By MS/MS 4 1 3 1.0475 1.0135 24.13 7 Median 1.2559 1.1994 17.137 3 0 Median 0.88576 0.78153 NaN 1 0 Median 0.92899 1.0042 27.43 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85155000 42952000 42204000 40625000 18216000 22409000 2475300 1476000 999240 42055000 23259000 18796000 0 0 0 0 0 0 0 0 0 5152 2881 5363;5364 26208;26209;26210;26211;26212;26213;26214;26215 26410;26411;26412;26413;26414;26415 26413 1572 6 DQVANSAFVER KENQKHIYYITGETKDQVANSAFVERLRKH GETKDQVANSAFVERLRKHGLEVIYMIEPI K D Q E R L 2 1 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1234.5942 P07900 P07900 500 510 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 3.299E-15 190.02 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 3 1 0.98876 0.96538 22.247 15 Median 0.99916 0.94911 9.1532 5 0 Median 1.0936 0.94631 35.028 6 1 Median 0.93656 0.98938 0.76251 3 2 Median 0.90446 0.77953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 613940000 283190000 330740000 306510000 140280000 166220000 242280000 110390000 131890000 55699000 27710000 27988000 9454600 4812700 4641900 0 0 0 0 0 0 5153 1894 5365 26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230 26416;26417;26418;26419;26420;26421;26422;26423;26424;26425;26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438 26418 23 DQVLAMLEK EKMAKATGKLKPTSKDQVLAMLEKAKVNMP LKPTSKDQVLAMLEKAKVNMPAKPAPPTKA K D Q E K A 1 0 0 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1045.5478 Q14008 Q14008 1067 1075 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0032652 66.299 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 3 1 1 1.1197 1.0306 51.552 9 Median 1.0303 0.99028 NaN 1 1 Median 1.0565 0.93118 NaN 1 0 Median 1.1314 1.2318 8.907 2 0 Median 1.1405 1.0306 15.065 3 0 Median 4.483 4.8016 NaN 1 0 Median 1.1197 0.96213 NaN 1 0 Median 36516000 15240000 21277000 4615200 2386700 2228500 1768100 545680 1222400 20431000 9247900 11183000 4658800 2203400 2455400 4291200 499770 3791400 752080 356300 395780 5154 2850 5366;5367 26231;26232;26233;26234;26235;26236;26237;26238;26239 26439;26440;26441;26442;26443;26444 26441 1531 6 DQVLHEHIQR FKLAFYPNQDGDILRDQVLHEHIQRLSKVV GDILRDQVLHEHIQRLSKVVTANHRALQIP R D Q Q R L 0 1 0 1 0 2 1 0 2 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1273.6527 Q14C86;F8W9S7 Q14C86 1341 1350 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 0.0033579 41.399 By MS/MS By MS/MS 1 2 1.0703 0.93368 21.006 3 Median 0.9319 0.93368 NaN 1 0 Median 1.2841 1.0956 26.683 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5807200 2594300 3212900 992050 588900 403150 4815200 2005400 2809800 0 0 0 0 0 0 0 0 0 0 0 0 5155 2907 5368 26240;26241;26242 26445;26446;26447 26447 3 DQVTAQEIFQDNHEDGPTAK SKIKTLFPLIEAKKKDQVTAQEIFQDNHED QEIFQDNHEDGPTAKKLKTEQGGAHFSVSS K D Q A K K 2 0 1 3 0 3 2 1 1 1 0 1 0 1 1 0 2 0 0 1 0 0 20 0 2242.0138 P13010 P13010 546 565 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 1.6701E-14 106.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1 0.87577 0.89638 10.276 9 Median 0.87237 0.77443 NaN 1 0 Median 1.0262 0.89638 NaN 1 0 Median 0.73907 0.79796 15.672 3 0 Median 1.0633 0.9188 8.4032 3 1 Plateau 0.87577 0.90336 NaN 1 0 Median NaN NaN NaN 0 0 Median 123960000 64609000 59354000 26749000 14147000 12602000 6899800 3193200 3706600 58515000 32425000 26090000 29564000 13565000 15999000 2234900 1277900 956990 0 0 0 5156 1986 5369 26243;26244;26245;26246;26247;26248;26249;26250;26251 26448;26449;26450;26451;26452;26453;26454;26455;26456;26457;26458;26459 26448 12 DQWAAAMTLR NISSVTGAICLDILKDQWAAAMTLRTVLLS LDILKDQWAAAMTLRTVLLSLQALLAAAEP K D Q L R T 3 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 10 0 1161.5601 P61086 P61086 98 107 UBE2K Ubiquitin-conjugating enzyme E2 K yes yes 2 0.00033784 85.731 By MS/MS 1 1.0899 1.0326 NaN 1 Median 1.0899 1.0326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8751000 4383700 4367200 8751000 4383700 4367200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5157 2543 5370 26252 26460;26461 26461 2 DQWEDRIQVWHAEHR RLIPQRVMDQHKLTRDQWEDRIQVWHAEHR DQWEDRIQVWHAEHRGMLKDNAMLEYLKIA R D Q H R G 1 2 0 2 0 2 2 0 2 1 0 0 0 0 0 0 0 2 0 1 0 0 15 1 2003.9351 P15311;E7EQR4 P15311 166 180 EZR Ezrin yes no 4 0.0038362 27.643 By MS/MS 1 1.2992 1.3321 NaN 1 Median 1.2992 1.3321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7368600 3566900 3801700 7368600 3566900 3801700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5158 879 5371 26253 26462;26463 26462 2 DRDMDELKK AVSEQGDKKGKKGKKDRDMDELKKEVSMDD GKKGKKDRDMDELKKEVSMDDHKLSLDELH K D R K K E 0 1 0 3 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 9 2 1148.5496 P05023 P05023 29 37 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.043384 47.198 By matching By MS/MS 1 1 0.9517 1.0099 7.7404 2 Median 0.84118 0.95612 NaN 1 0 Median 1.0767 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1720000 763250 956750 298330 131010 167320 1421700 632240 789430 0 0 0 0 0 0 0 0 0 0 0 0 5159 1857 5372 26254;26255 26464 26464 1 DRDNDSDDVESNLLLPAGIALR MFVLGTGDEPPPERRDRDNDSDDVESNLLL DVESNLLLPAGIALRWVTFLLKIYRAEDIP R D R L R W 2 2 2 5 0 0 1 1 0 1 4 0 0 0 1 2 0 0 0 1 0 0 22 1 2397.1772 Q9NZM1 Q9NZM1 335 356 MYOF Myoferlin yes yes 3 0.030411 13.455 By MS/MS 1 0.5779 0.58358 NaN 1 Median NaN NaN NaN 0 0 Median 0.5779 0.58358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 851430 511170 340260 0 0 0 851430 511170 340260 0 0 0 0 0 0 0 0 0 0 0 0 5160 4192 5373 26256 26465 26465 1 DRDYSDHPSGGSYR DYPSRGYSDRDGYGRDRDYSDHPSGGSYRD RDRDYSDHPSGGSYRDSYESYGNSRSAPPT R D R Y R D 0 2 0 3 0 0 0 2 1 0 0 0 0 0 1 3 0 0 2 0 0 0 14 1 1610.671 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 269 282 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3;4 1.486E-08 103.83 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 12 7 0.88821 0.91902 12.326 26 Median NaN NaN NaN 0 0 Median 0.93594 0.87405 NaN 1 0 Median 0.76335 0.78238 14.631 3 0 Median 0.99231 0.926 7.2987 3 1 Median 0.81954 0.88029 10.882 12 0 Median 1.1345 1.003 10.935 7 0 Median 131100000 69844000 61251000 0 0 0 436180 232530 203650 3057400 1704000 1353300 4931900 2211000 2720900 112410000 60853000 51557000 10260000 4843100 5417000 5161 2273;3632 5374 26257;26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270;26271;26272;26273;26274;26275;26276;26277;26278;26279;26280;26281;26282 26466;26467;26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479;26480;26481;26482;26483;26484;26485;26486;26487;26488;26489 26475 24 DRDYSDHPSGGSYRDSYESYGNSR DYPSRGYSDRDGYGRDRDYSDHPSGGSYRD GGSYRDSYESYGNSRSAPPTRGPPPSYGGS R D R S R S 0 3 1 4 0 0 1 3 1 0 0 0 0 0 1 6 0 0 4 0 0 0 24 2 2769.1287 P38159;H3BUY5;Q96E39 P38159 269 292 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 4 2.4165E-18 80.83 By MS/MS 2 0.87044 1.1469 5.9212 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87044 1.1469 5.9212 2 0 Median NaN NaN NaN 0 0 Median 22880000 12082000 10797000 0 0 0 0 0 0 0 0 0 0 0 0 22880000 12082000 10797000 0 0 0 5162 2273;3632 5375 26283;26284 26490;26491;26492 26492 3 DREEALHQFR EGYACTSIHGDRSQRDREEALHQFRSGKSP DRSQRDREEALHQFRSGKSPILVATAVAAR R D R F R S 1 2 0 1 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1299.632 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 478 487 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.00013429 107.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 5 5 1.2226 1.102 24.643 18 Median 1.3279 1.3346 34.008 2 0 Median 1.066 0.96815 4.5292 2 0 Median 1.2728 1.4204 28.502 3 1 Median 1.2802 1.1853 32.767 2 0 Median 1.4054 1.5 33.391 5 0 Median 1.2038 1.0734 3.8626 4 1 Median 141210000 63476000 77733000 22478000 10873000 11605000 30443000 14480000 15963000 25394000 10909000 14485000 6759200 3091300 3667900 35914000 14760000 21154000 20221000 9363100 10858000 5163 263 5376 26285;26286;26287;26288;26289;26290;26291;26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304 26493;26494;26495;26496;26497;26498;26499;26500;26501;26502;26503;26504;26505;26506;26507;26508;26509;26510;26511;26512;26513;26514;26515;26516;26517 26505 25 DREEDEEDAYERR REREREREREKDKKRDREEDEEDAYERRKL KRDREEDEEDAYERRKLERKLREKEAAYQE R D R R R K 1 3 0 3 0 0 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 13 2 1710.7081 P49756 P49756 432 444 RBM25 RNA-binding protein 25 yes yes 3 0.0008589 47.189 By MS/MS By matching 2 1 0.8382 0.91942 13.703 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84778 0.99743 11.518 2 0 Median 0.8382 0.82411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7716800 4163400 3553400 0 0 0 0 0 0 6999000 3859900 3139100 717780 303520 414260 0 0 0 0 0 0 5164 2397 5377 26305;26306;26307 26518;26519;26520 26519 3 DREGFFTNGLTLGAK ______________________________ DREGFFTNGLTLGAKKCSVIRDSLYVDGDC K D R A K K 1 1 1 1 0 0 1 3 0 0 2 1 0 2 0 0 2 0 0 0 0 0 15 1 1624.8209 C9J0J7;G5E9Q6;C9JQ45;C9J2N0;C9J712;P35080 C9J0J7 6 20 PFN2 Profilin;Profilin-2 no no 3 0.006198 26.435 By matching By matching By MS/MS 1 1 1 1.1289 1.107 8.7571 3 Median 1.1289 1.107 NaN 1 0 Median 1.3192 1.1647 NaN 1 0 Median 0.94377 0.98207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8805700 4166800 4638900 3080100 1474300 1605800 562790 246570 316210 5162800 2445900 2716800 0 0 0 0 0 0 0 0 0 5165 668;680 5378 26308;26309;26310 26521;26522 26522 2 DREIQLEISGK GTPLTLYYSHWRKLRDREIQLEISGKERLE RKLRDREIQLEISGKERLEDLNFPEIKRRK R D R G K E 0 1 0 1 0 1 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1286.683 Q9Y3T9 Q9Y3T9 627 637 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.00074299 111.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1762 1.1461 4.6175 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99036 1.1228 NaN 1 0 Median 1.2487 1.1698 NaN 1 1 Median 1.1078 1.2186 NaN 1 0 Median 1.2681 1.0975 NaN 1 0 Median 30787000 13966000 16821000 0 0 0 0 0 0 10064000 5181300 4882400 5598700 2180900 3417800 11208000 4998100 6209400 3917200 1605900 2311300 5166 4433 5379 26311;26312;26313;26314 26523;26524;26525;26526 26524 4 DRELDLR AELIEQAAQYTNAVRDRELDLRGYKIPVIE AQYTNAVRDRELDLRGYKIPVIENLGATLD R D R L R G 0 2 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 915.47739 P09661;H0YKK0 P09661 21 27 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00042275 119.41 By MS/MS By MS/MS 1 1 1.1174 1.0485 3.2922 2 Median NaN NaN NaN 0 0 Median 1.2637 1.0732 NaN 1 0 Median 0.98801 1.0244 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10759000 5544000 5215000 0 0 0 3436700 1551200 1885400 7322400 3992800 3329600 0 0 0 0 0 0 0 0 0 5167 1920 5380 26315;26316 26527;26528 26527 2 DRELWVQR VVSEIPVLKTNAGPRDRELWVQRLKEEYQS KTNAGPRDRELWVQRLKEEYQSLIRYVENN R D R Q R L 0 2 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 8 1 1100.5727 Q9Y3C8 Q9Y3C8 24 31 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 2 0.011 133.86 By MS/MS By MS/MS By matching 1 1 1 1.105 1.1582 13.819 3 Plateau 1.105 1.1582 NaN 1 0 Median 1.22 1.116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0016 0.89686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12427000 5627100 6799400 9141400 4413800 4727700 2585200 925020 1660100 0 0 0 699960 288370 411600 0 0 0 0 0 0 5168 4420 5381 26317;26318;26319 26529;26530;26531 26530 3 DREVGIPPEQSLETAK IAGRDITYFIQQLLRDREVGIPPEQSLETA REVGIPPEQSLETAKAVKERYSYVCPDLVK R D R A K A 1 1 0 1 0 1 3 1 0 1 1 1 0 0 2 1 1 0 0 1 0 0 16 1 1767.9003 B4DXW1;P61158 B4DXW1 159 174 ACTR3 Actin-related protein 3 yes no 2;3 2.0805E-11 110.6 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 0.84843 0.85613 18.299 9 Median 0.94839 0.94652 15.748 2 0 Median 1.1191 1.0517 23.613 3 0 Median 0.75457 0.79356 14.263 3 0 Median 0.9643 0.91989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68782000 35199000 33583000 13003000 7201100 5802200 7596800 3613000 3983800 24723000 13067000 11656000 23460000 11318000 12141000 0 0 0 0 0 0 5169 607 5382 26320;26321;26322;26323;26324;26325;26326;26327;26328;26329 26532;26533;26534;26535;26536;26537;26538;26539 26537 7 DRFTDILVR DILKKRLQLPVWEYKDRFTDILVRHQSFVL PVWEYKDRFTDILVRHQSFVLVGETGSGKT K D R V R H 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 1 1133.6193 O43143 O43143 144 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.025659 70.1 By MS/MS 1 0.9253 0.94871 NaN 1 Median 0.9253 0.94871 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3816200 2008200 1808000 3816200 2008200 1808000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5170 1553 5383 26330 26540 26540 1 DRFWTVADTVK SDASANEILGSLRWRDRFWTVADTVKVDAP LRWRDRFWTVADTVKVDAPGLALLALHWHW R D R V K V 1 1 0 2 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 2 0 0 11 1 1336.6776 Q9NU22 Q9NU22 2725 2735 MDN1 Midasin yes yes 2 0.00053641 127.42 By MS/MS 1 0.96083 1.1141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96083 1.1141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11191000 5664200 5526700 0 0 0 0 0 0 11191000 5664200 5526700 0 0 0 0 0 0 0 0 0 5171 4112 5384 26331 26541;26542 26541 2 DRGFGFIR LFERYGEPSEVFINRDRGFGFIRLESRTLA SEVFINRDRGFGFIRLESRTLAEIAKAELD R D R I R L 0 2 0 1 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 8 1 966.50355 Q8WXF1;X6RDA4 Q8WXF1 116 123 PSPC1 Paraspeckle component 1 yes no 2 0.037235 65.252 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.298 1.4179 25.936 6 Median 1.2192 1.3623 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93811 1.0299 1.9393 2 0 Median 2.0032 1.8665 NaN 1 0 Median 1.382 1.4757 NaN 1 0 Median 2.0946 1.7947 NaN 1 0 Median 16930000 8302600 8627100 2750600 1402700 1347900 0 0 0 10715000 5602500 5112500 265880 69504 196370 2199600 893530 1306000 998570 334370 664200 5172 3520 5385 26332;26333;26334;26335;26336;26337 26543;26544 26543 2 DRIPQILTK LSGQDVGSFAYLTIKDRIPQILTKVIDTLH AYLTIKDRIPQILTKVIDTLHRHKSEFFEK K D R T K V 0 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 9 1 1082.6448 Q9H993 Q9H993 23 31 ARMT1 Protein-glutamate O-methyltransferase yes yes 2 0.032741 53.089 By MS/MS By matching 1 1 0.93661 0.89597 25.491 2 Median 0.74696 0.74819 NaN 1 0 Median 1.1744 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5821100 2997600 2823500 3233300 1854400 1378900 2587700 1143200 1444600 0 0 0 0 0 0 0 0 0 0 0 0 5173 3995 5386 26338;26339 26545 26545 1 DRLEGAIHLQEQDMENSR DTYTVEKVEVHRLIRDRLEGAIHLQEQDME EGAIHLQEQDMENSRQVLNSYEVLGEEFDR R D R S R Q 1 2 1 2 0 2 3 1 1 1 2 0 1 0 0 1 0 0 0 0 0 0 18 1 2139.9967 G3V2T6;Q9H6D7 G3V2T6 134 151 HAUS4 HAUS augmin-like complex subunit 4 yes no 3 2.0261E-06 60.528 By MS/MS 1 1.0079 1.0331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0079 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4679800 2072700 2607100 0 0 0 0 0 0 4679800 2072700 2607100 0 0 0 0 0 0 0 0 0 5174 1109 5387 26340 26546 26546 1 DRLIEVER ERESQETTRELLKVKDRLIEVERNNATLQA RELLKVKDRLIEVERNNATLQAEKQALKTQ K D R E R N 0 2 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 1 1028.5615 Q3V6T2;A0A2R8YGU1;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8Y7D4;H7C2C6;A0A2R8YDS8;H0Y470 Q3V6T2 1046 1053 CCDC88A Girdin yes no 2 0.077726 49.418 By MS/MS 1 0.61872 0.68741 NaN 1 Median 0.61872 0.68741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16952000 10563000 6389600 16952000 10563000 6389600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5175 367 5388 26341 26547 26547 1 DRLIVMNVAEK CKPLLLDNIHFSGVKDRLIVMNVAEKHRGN SGVKDRLIVMNVAEKHRGNYTCHASYTYLG K D R E K H 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 2 0 0 11 1 1286.7017 C9J3W8;B8ZZ73;B8ZZW4;P14778 C9J3W8 35 45 IL1R1 Interleukin-1 receptor type 1;Interleukin-1 receptor type 1, membrane form;Interleukin-1 receptor type 1, soluble form yes no 2 0.0035124 93.649 By MS/MS 1 0.0083865 0.0066108 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0083865 0.0066108 NaN 1 1 Median 105790000 105440000 349230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105790000 105440000 349230 5176 644 5389 26342 26548 26548 240 1 DRLLASTLVHSVK PVPLDDSNRPASLTKDRLLASTLVHSVKKE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP K D R V K K 1 1 0 1 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 13 1 1437.8304 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 568 580 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00010553 76.759 By matching By MS/MS By MS/MS 1 2 2 0.87873 0.97876 12.049 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87873 0.99588 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84295 0.94116 0.5948 2 1 Median 1.2482 1.1082 17.561 2 1 Median 27481000 13680000 13801000 0 0 0 0 0 0 3921000 2170700 1750300 0 0 0 17936000 9239500 8696600 5623700 2270100 3353500 5177 4175 5390 26343;26344;26345;26346;26347 26549;26550;26551 26550 3 DRLPAVTSEEGGVAER NLHQHLKQEQEGVERDRLPAVTSEEGGVAE RLPAVTSEEGGVAERDASERKLNRRGSMSY R D R E R D 2 2 0 1 0 0 3 2 0 0 1 0 0 0 1 1 1 0 0 2 0 0 16 1 1684.838 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4081 4096 SYNE2 Nesprin-2 yes no 3 1.8613E-05 78.441 By MS/MS By matching 1 1 0.72662 0.78587 11.83 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6577 0.72281 NaN 1 0 Median 0.80276 0.85444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8599700 5263400 3336400 0 0 0 0 0 0 7799000 4768600 3030300 800780 494740 306040 0 0 0 0 0 0 5178 3521 5391 26348;26349 26552 26552 1 DRLPLAVVGSNTIIEVNGK ETDDEEENKLVKKIKDRLPLAVVGSNTIIE LAVVGSNTIIEVNGKRVRGRQYPWGVAEVE K D R G K R 1 1 2 1 0 0 1 2 0 2 2 1 0 0 1 1 1 0 0 3 0 0 19 1 1994.116 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 222 240 SEPT7 Septin-7 yes no 3 5.9457E-07 57.482 By MS/MS By matching 1 1 0.86779 0.85641 11.218 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78124 0.7911 NaN 1 0 Median 0.96393 0.92711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7775800 4037500 3738300 0 0 0 0 0 0 5631600 2931500 2700100 2144200 1106000 1038200 0 0 0 0 0 0 5179 870 5392 26350;26351 26553 26553 1 DRLVPGPVFGSK KKNLHGDGIALWYTRDRLVPGPVFGSKDNF YTRDRLVPGPVFGSKDNFHGLAIFLDTYPN R D R S K D 0 1 0 1 0 0 0 2 0 0 1 1 0 1 2 1 0 0 0 2 0 0 12 1 1270.7034 Q12907;D6RBV2;D6RIU4;D6RBH1 Q12907 140 151 LMAN2 Vesicular integral-membrane protein VIP36 yes no 2 0.019047 63.624 By MS/MS 2 0.73266 0.73957 6.9798 2 Median 0.73266 0.73957 6.9798 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43754000 25531000 18223000 43754000 25531000 18223000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5180 2770 5393 26352;26353 26554;26555 26554 2 DRPASGSPFQLFLSK KSNAKLWNEVLASLKDRPASGSPFQLFLSK DRPASGSPFQLFLSKVEETFQCICCQELVF K D R S K V 1 1 0 1 0 1 0 1 0 0 2 1 0 2 2 3 0 0 0 0 0 0 15 1 1648.8573 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 716 730 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 2.1709E-06 88.187 By MS/MS By matching 2 2 0.65652 0.70412 52.753 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96469 1.0934 79.913 2 1 Median NaN NaN NaN 0 0 Median 0.65652 0.70412 5.1077 2 0 Median NaN NaN NaN 0 0 Median 27722000 13722000 14000000 0 0 0 0 0 0 24388000 11843000 12545000 0 0 0 3334200 1879600 1454700 0 0 0 5181 20 5394 26354;26355;26356;26357 26556;26557 26557 2 DRPFFAGLVK QASEDLLKEHYVDLKDRPFFAGLVKYMHSG YVDLKDRPFFAGLVKYMHSGPVVAMVWEGL K D R V K Y 1 1 0 1 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 10 1 1148.6342 P15531;Q32Q12;J3KPD9;E7ERL0;E5RHP0 Q32Q12 82 91 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase no no 2 0.002872 72.928 By MS/MS By MS/MS By MS/MS 2 2 1 1.0411 1.0103 3.265 5 Median 1.0172 0.99337 3.8622 2 0 Median 1.122 0.99051 2.7902 2 0 Median 1.0096 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 223180000 109680000 113500000 146520000 73315000 73203000 44084000 20040000 24044000 32576000 16323000 16253000 0 0 0 0 0 0 0 0 0 5182 3008;2018 5395 26358;26359;26360;26361;26362 26558;26559;26560 26560 3 DRPFFPGLVK RASEEHLKQHYIDLKDRPFFPGLVKYMNSG YIDLKDRPFFPGLVKYMNSGPVVAMVWEGL K D R V K Y 0 1 0 1 0 0 0 1 0 0 1 1 0 2 2 0 0 0 0 1 0 0 10 1 1174.6499 Q32Q12;J3KPD9;P22392;O60361;F6XY72 Q32Q12 197 206 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.0016643 110.87 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.95439 0.90054 42.566 6 Median 0.9167 0.88685 NaN 1 0 Median 1.5444 1.4098 67.058 2 0 Median 1.021 1.05 19.549 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82459 0.65955 NaN 1 0 Median 589860000 297420000 292430000 359890000 179680000 180210000 156360000 78531000 77826000 72829000 38802000 34026000 0 0 0 0 0 0 783090 406600 376490 5183 3008 5396 26363;26364;26365;26366;26367;26368 26561;26562;26563;26564;26565;26566;26567;26568 26561 8 DRPQEADGIDSVIVVDNVPQVGPDR VDDVSEEELLGDVLKDRPQEADGIDSVIVV SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF K D R D R L 1 2 1 5 0 2 1 2 0 2 0 0 0 0 3 1 0 0 0 5 0 0 25 1 2689.3307 P55884;C9JZG1 P55884 175 199 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 3 2.5794E-05 34.715 By matching By matching By MS/MS By matching 1 2 1 1 0.81781 0.83444 10.138 5 Median 0.81781 0.8385 NaN 1 0 Median 0.76419 0.74635 15.779 2 0 Median 0.70907 0.81931 NaN 1 0 Median 0.86916 0.8509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7927200 4573700 3353500 984690 588190 396500 1746500 900300 846190 4700100 2786500 1913500 495930 298710 197210 0 0 0 0 0 0 5184 2504 5397 26369;26370;26371;26372;26373 26569 26569 1 DRRPVHLDQAAFR SSNGRQWKPQLGFNRDRRPVHLDQAAFRTL NRDRRPVHLDQAAFRTLGHVMPRGSGTGIY R D R F R T 2 3 0 2 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 13 2 1579.8332 Q9H0D6 Q9H0D6 804 816 XRN2 5-3 exoribonuclease 2 yes yes 3;4 0.00047205 53.754 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 0.85485 0.98828 4.9856 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7393 0.89684 NaN 1 0 Median 0.93889 0.92311 NaN 1 0 Median 0.85485 0.98828 NaN 1 0 Median NaN NaN NaN 0 0 Median 13287000 5284000 8002900 797530 0 797530 0 0 0 2317200 1299100 1018200 5080200 1349900 3730300 5091900 2635000 2456900 0 0 0 5185 3924 5398 26374;26375;26376;26377;26378;26379 26570;26571;26572;26573;26574;26575 26573 6 DRSSFYVNGLTLGGQK FVNITPAEVGVLVGKDRSSFYVNGLTLGGQ RSSFYVNGLTLGGQKCSVIRDSLLQDGEFS K D R Q K C 0 1 1 1 0 1 0 3 0 0 2 1 0 1 0 2 1 0 1 1 0 0 16 1 1740.8795 P07737;K7EJ44;I3L3D5 P07737 55 70 PFN1 Profilin-1 yes no 2;3 4.3095E-05 55.755 By MS/MS By MS/MS 2 2 1.1115 1.0342 12.853 4 Median 1.1491 1.1268 8.4985 2 0 Median 1.0651 0.94037 9.8076 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20685000 8847900 11837000 17489000 7343500 10145000 3195700 1504400 1691300 0 0 0 0 0 0 0 0 0 0 0 0 5186 1889 5399 26380;26381;26382;26383 26576;26577;26578 26576 3 DRTQIALSPNNHEVHIYK HQFLLEPITCHAWNRDRTQIALSPNNHEVH QIALSPNNHEVHIYKKNGSQWVKAHELKEH R D R Y K K 1 1 2 1 0 1 1 0 2 2 1 1 0 0 1 1 1 0 1 1 0 0 18 1 2134.0919 A0A1W2PNV4;E9PF58;Q92747 Q92747 19 36 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 4 0.00059749 34.274 By MS/MS 1 1.007 1.1448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 1.1448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6303800 3430800 2873000 0 0 0 0 0 0 6303800 3430800 2873000 0 0 0 0 0 0 0 0 0 5187 334;3552 5400 26384 26579 26579 1 DRVALSNMNVIDR PAIKATFDISLVVPKDRVALSNMNVIDRKP PKDRVALSNMNVIDRKPYPDDENLVEVKFA K D R D R K 1 2 2 2 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 2 0 0 13 1 1501.7671 E9PLK3;P55786;A6NEC2 E9PLK3 205 217 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0034819 77.593 By MS/MS 1 0.7146 0.79394 NaN 1 Median 0.7146 0.79394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4374600 2751000 1623600 4374600 2751000 1623600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5188 960 5401 26385 26580 26580 1 DRVTDALNATR LKVGGTSDVEVNEKKDRVTDALNATRAAVE NEKKDRVTDALNATRAAVEEGIVLGGGCAL K D R T R A 2 2 1 2 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 11 1 1230.6317 P10809 P10809 419 429 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.00054298 131.17 By MS/MS By MS/MS 1 2 1.2747 1.2559 104 3 Plateau 1.2747 1.2559 NaN 1 0 Median 0.51474 0.47483 123.79 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25865000 12064000 13801000 16686000 6986000 9700300 9178700 5077600 4101100 0 0 0 0 0 0 0 0 0 0 0 0 5189 1947 5402 26386;26387;26388 26581;26582;26583 26582 3 DRVTSAVEALLSADSASR EIARDGLGGLPDIVRDRVTSAVEALLSADS TSAVEALLSADSASRKQEVQAWDGEVRQVS R D R S R K 4 2 0 2 0 0 1 0 0 0 2 0 0 0 0 4 1 0 0 2 0 0 18 1 1846.9385 P45974 P45974 145 162 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2;3 0.0071146 35.737 By MS/MS By MS/MS By matching 3 2 1 1.0383 1.1082 27.088 6 Median 1.0639 1.1258 4.8317 3 0 Median 1.0131 1.0023 23.154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5757 0.59998 NaN 1 0 Median NaN NaN NaN 0 0 Median 21467000 9995000 11472000 4626000 2240300 2385700 16612000 7619600 8992100 0 0 0 0 0 0 229060 135120 93942 0 0 0 5190 2332 5403 26389;26390;26391;26392;26393;26394 26584;26585;26586;26587;26588 26586 5 DRYDSFIELQEK PFAVAAVLRNIKFTKDRYDSFIELQEKLHQ FTKDRYDSFIELQEKLHQNICRKRALVAIG K D R E K L 0 1 0 2 0 1 2 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 12 1 1541.7362 Q9NSD9 Q9NSD9 134 145 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.044037 56.404 By MS/MS 1 0.33316 0.33427 NaN 1 Median 0.33316 0.33427 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9723700 7398700 2325000 9723700 7398700 2325000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5191 4102 5404 26395 26589 26589 1 DSADGFLK FQLFQSPHGKDLLFKDSADGFLKIPSKMDF GKDLLFKDSADGFLKIPSKMDFELYLGYEY K D S L K I 1 0 0 2 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 8 0 851.4025 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 320 327 yes no 2 0.028767 60.76 By MS/MS By MS/MS 1 1 0.0356 0.032046 38.256 2 Median 0.044762 0.042001 NaN 1 1 Median 0.028313 0.024451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7391300 7041800 349460 5209700 4955800 253860 2181600 2086000 95600 0 0 0 0 0 0 0 0 0 0 0 0 + 5192 769 5405 26396;26397 26590;26591 26590 2 DSAIPVESDTDDEGAPR LEEDEAIRKNVNIYRDSAIPVESDTDDEGA AIPVESDTDDEGAPRISLAEMLEDLHISQD R D S P R I 2 1 0 4 0 0 2 1 0 1 0 0 0 0 2 2 1 0 0 1 0 0 17 0 1772.7701 C9JA08;Q96D46 C9JA08 461 477 NMD3 60S ribosomal export protein NMD3 yes no 2 3.5258E-05 64.878 By MS/MS 1 0.99793 0.86074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99793 0.86074 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1417800 627370 790440 0 0 0 0 0 0 0 0 0 1417800 627370 790440 0 0 0 0 0 0 5193 683 5406 26398 26592 26592 1 DSAIQQQVANLQMK IEGEWGAFNDIMRRKDSAIQQQVANLQMKI KDSAIQQQVANLQMKIVQEDRAVESRTTDL K D S M K I 2 0 1 1 0 4 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 14 0 1572.793 Q14204 Q14204 1229 1242 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 3.2196E-11 176.38 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 4 3 1 1.0081 1.0425 43.036 10 Median 1.025 1.0294 NaN 1 0 Median 1.0594 0.94212 NaN 1 1 Median 0.99124 1.0624 64.868 4 1 Median 1.1968 1.1664 25.39 3 0 Plateau NaN NaN NaN 0 0 Median 0.61105 0.57312 NaN 1 0 Median 129780000 57999000 71784000 51280000 22864000 28416000 14672000 6036400 8635600 58608000 26663000 31945000 5034400 2304500 2729900 0 0 0 188720 132090 56626 5194 2865 5407;5408 26399;26400;26401;26402;26403;26404;26405;26406;26407;26408 26593;26594;26595;26596;26597;26598;26599 26594 1548 7 DSALETLQGQLEEK LERSLEAERASRAERDSALETLQGQLEEKA RDSALETLQGQLEEKAQELGHSQSALASAQ R D S E K A 1 0 0 1 0 2 3 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1559.7679 A0A087WY61;Q14980 Q14980 1161 1174 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 3.5733E-08 168.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 0.98375 0.95275 6.8816 6 Median NaN NaN NaN 0 0 Median 1.107 0.98085 NaN 1 0 Median 0.90325 0.98689 9.0098 2 1 Median 1.0859 0.9803 NaN 1 0 Median 0.87804 0.92044 NaN 1 0 Median 1.0028 0.86104 NaN 1 0 Median 163250000 82289000 80961000 0 0 0 11049000 5204300 5845000 108830000 55532000 53301000 3694700 1634800 2059800 38830000 19529000 19301000 843640 389650 453990 5195 2905;77 5409 26409;26410;26411;26412;26413;26414 26600;26601;26602;26603;26604;26605;26606;26607;26608;26609 26601 10 DSAMLVLR RAAIAFLHALWQDRRDSAMLVLRTKPKFWE ALWQDRRDSAMLVLRTKPKFWENLTSPLFG R D S L R T 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 8 0 903.48479 Q5SRE5 Q5SRE5 997 1004 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.005683 74.415 By MS/MS 1 1.2946 1.4384 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2946 1.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2876800 1289300 1587500 0 0 0 0 0 0 2876800 1289300 1587500 0 0 0 0 0 0 0 0 0 5196 3074 5410 26415 26610;26611 26611 2 DSAQNSVIIVDK SKVWRDQHFVKIQVKDSAQNSVIIVDKNGR QVKDSAQNSVIIVDKNGRLVYLVENPGGYV K D S D K N 1 0 1 2 0 1 0 0 0 2 0 1 0 0 0 2 0 0 0 2 0 0 12 0 1287.667 P02786;G3V0E5 P02786 194 205 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.00039479 79.974 By MS/MS 1 1.154 1.009 NaN 1 Median NaN NaN NaN 0 0 Median 1.154 1.009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5057100 2132400 2924700 0 0 0 5057100 2132400 2924700 0 0 0 0 0 0 0 0 0 0 0 0 5197 1836 5411 26416 26612;26613 26612 2 DSAQTSVTQAQR LEILQQQLQVANEARDSAQTSVTQAQREKA EARDSAQTSVTQAQREKAELSRKVEELQAC R D S Q R E 2 1 0 1 0 3 0 0 0 0 0 0 0 0 0 2 2 0 0 1 0 0 12 0 1290.6164 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 632 643 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.016372 53.327 By MS/MS 1 0.64343 0.66957 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64343 0.66957 NaN 1 1 Median NaN NaN NaN 0 0 Median 1053900 682800 371140 0 0 0 0 0 0 0 0 0 0 0 0 1053900 682800 371140 0 0 0 5198 2905;77 5412 26417 26614 26614 1 DSAVAISGADSR EDSSPPASSESSSTRDSAVAISGADSRGIL STRDSAVAISGADSRGILEEPLPSTSSEEE R D S S R G 3 1 0 2 0 0 0 1 0 1 0 0 0 0 0 3 0 0 0 1 0 0 12 0 1147.5469 Q7Z6Z7 Q7Z6Z7 2930 2941 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00016495 86.898 By MS/MS By MS/MS 2 2 0.98734 0.91099 19.267 4 Median 0.79784 0.80357 21.917 2 0 Median 1.1609 0.9835 15.003 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9799300 4649000 5150300 3341400 1540000 1801400 6457800 3108900 3348900 0 0 0 0 0 0 0 0 0 0 0 0 5199 3253 5413 26418;26419;26420;26421 26615;26616;26617;26618 26618 4 DSAVMDDSVVIPSHQVSTLAK SSDRSHTLSHASYLRDSAVMDDSVVIPSHQ DSVVIPSHQVSTLAKEAERNSYRLSWGTEN R D S A K E 2 0 0 3 0 1 0 0 1 1 1 1 1 0 1 4 1 0 0 4 0 0 21 0 2198.0889 I6L894;Q01484;E9PHW9;A0A0U1RQN6;D6RHE1;E9PCH6;B7Z651 I6L894 918 938 ANK2 Ankyrin-2 yes no 3 0.035225 11.956 By MS/MS 1 0.77063 0.74277 NaN 1 Median 0.77063 0.74277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3415600 1882500 1533100 3415600 1882500 1533100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5200 1297 5414 26422 26619 26619 1 DSAYPEELSR DKAKLAPGTIVEVWKDSAYPEELSRVTASG VEVWKDSAYPEELSRVTASGFPVILSAPWY K D S S R V 1 1 0 1 0 0 2 0 0 0 1 0 0 0 1 2 0 0 1 0 0 0 10 0 1165.5251 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 426 435 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2 0.0027545 66.692 By MS/MS By MS/MS By matching 1 1 1 1.115 0.94427 22.305 3 Median 0.79845 0.75335 NaN 1 0 Median 1.115 0.94427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2279 1.1769 NaN 1 0 Median 7429700 3864700 3565000 4225400 2377100 1848300 3012600 1390500 1622100 0 0 0 0 0 0 0 0 0 191700 97105 94591 5201 1888 5415 26423;26424;26425 26620;26621;26622 26620 2 DSAYQSITHYRPVSASR SEEECKDRERPMYGRDSAYQSITHYRPVSA AYQSITHYRPVSASRSSLDLSYYPTSSSTS R D S S R S 2 2 0 1 0 1 0 0 1 1 0 0 0 0 1 4 1 0 2 1 0 0 17 1 1936.9391 P50402;Q5HY57 P50402 158 174 EMD Emerin yes no 2;3;4 8.4646E-11 100.45 By MS/MS By matching By matching By MS/MS By MS/MS 2 3 2 6 3 0.9775 0.99605 17.902 16 Median 0.9024 0.9715 11.947 2 1 Median 0.79164 0.72866 17.161 3 0 Median 0.70358 0.73437 17.421 2 0 Median NaN NaN NaN 0 0 Median 0.98825 1.0633 6.1402 6 0 Median 1.1082 0.979 5.8558 3 0 Median 290220000 153570000 136640000 90868000 52187000 38681000 13525000 7592400 5932900 11047000 6036700 5010600 0 0 0 159550000 80284000 79265000 15227000 7474100 7752500 5202 2412 5416 26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441 26623;26624;26625;26626;26627;26628;26629;26630;26631 26626 9 DSDEADLVLAK ATDSSGELMFLMKWKDSDEADLVLAKEANM MKWKDSDEADLVLAKEANMKCPQIVIAFYE K D S A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1174.5717 Q13185 Q13185 144 154 CBX3 Chromobox protein homolog 3 yes yes 2 0.0029417 74.92 By MS/MS 1 0.76624 0.7197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76624 0.7197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8281600 4484400 3797200 0 0 0 0 0 0 8281600 4484400 3797200 0 0 0 0 0 0 0 0 0 5203 2795 5417 26442 26632 26632 1 DSDELKSWVNEK RAQLADSFHLQQFFRDSDELKSWVNEKMKT FFRDSDELKSWVNEKMKTATDEAYKDPSNL R D S E K M 0 0 1 2 0 0 2 0 0 0 1 2 0 0 0 2 0 1 0 1 0 0 12 1 1448.6783 A0A0D9SF54;Q13813 Q13813 581 592 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 3.8491E-05 157.75 By MS/MS 1 1.0643 1.2332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0643 1.2332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15030000 7465800 7564400 0 0 0 0 0 0 15030000 7465800 7564400 0 0 0 0 0 0 0 0 0 5204 264;2838 5418 26443 26633;26634 26633 2 DSDKEGTSNSTSEDGPGDGFTILSSK SKAAKPRTSKKSKPKDSDKEGTSNSTSEDG SEDGPGDGFTILSSKSLVLGQKLSLTQSDI K D S S K S 0 0 1 4 0 0 2 4 0 1 1 2 0 1 1 6 3 0 0 0 0 0 26 1 2630.1467 Q9P0M6;Q5SQT3 Q9P0M6 164 189 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 3 8.1138E-14 61.109 By MS/MS 2 0.73422 0.77965 0.022252 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73422 0.77965 0.022252 2 1 Median NaN NaN NaN 0 0 Median 16375000 9418700 6956300 0 0 0 0 0 0 0 0 0 0 0 0 16375000 9418700 6956300 0 0 0 5205 4206 5419 26444;26445 26635;26636;26637 26637 3 DSDKPETPPVVNVPVPVLIGPISGMSR LKSFQEILQIVSPVRDSDKPETPPVVNVPV VPVPVLIGPISGMSRPFVRTDSIGEKLGRY R D S S R P 0 1 1 2 0 0 1 2 0 2 1 1 1 0 6 3 1 0 0 5 0 0 27 1 2799.4841 A0A286YFF8;Q7Z3U7 A0A286YFF8 1182 1208 MON2 Protein MON2 homolog yes no 3 0.080152 5.78 By MS/MS 1 0.41433 0.4242 NaN 1 Median 0.41433 0.4242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1011700 635680 376010 1011700 635680 376010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5206 353 5420 26446 26638 26638 1 DSDKRPSLGLAPGGLAVVGR GRPFTKKFRSAGHGRDSDKRPSLGLAPGGL PSLGLAPGGLAVVGRSAGGEPGPEAGRAAD R D S G R S 2 2 0 2 0 0 0 4 0 0 3 1 0 0 2 2 0 0 0 2 0 0 20 2 1964.0803 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 655 674 WIZ Protein Wiz yes no 3 1.3004E-07 58.49 By MS/MS By matching By matching 2 1 1 0.55186 0.64302 9.6807 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53302 0.61389 14.821 2 0 Median 0.67063 0.67242 NaN 1 0 Median 0.52564 0.61491 NaN 1 0 Median NaN NaN NaN 0 0 Median 24549000 14199000 10351000 0 0 0 0 0 0 18846000 10541000 8304700 1082800 633790 448960 4621100 3024000 1597100 0 0 0 5207 656 5421 26447;26448;26449;26450 26639 26639 1 DSDKTDTDWR DKDRDDRSFGRDRNRDSDKTDTDWRARPAT RDRNRDSDKTDTDWRARPATDSFDDYPPRR R D S W R A 0 1 0 4 0 0 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 10 1 1237.5211 E7EX17;P23588;F8W0K0;F8VSC7;F8VP89 E7EX17 191 200 EIF4B Eukaryotic translation initiation factor 4B yes no 3 0.009853 33.89 By matching By matching By MS/MS By matching 1 1 1 1 0.86638 0.85459 17.505 4 Median 1.1613 1.1796 NaN 1 0 Median 0.89843 0.82651 NaN 1 0 Median 0.83127 0.88362 NaN 1 0 Median 0.83547 0.80669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4411200 2300500 2110700 599500 323040 276460 1512200 691280 820940 1908900 1090900 817930 390590 195250 195340 0 0 0 0 0 0 5208 904 5422 26451;26452;26453;26454 26640 26640 1 DSDLSHVQNK EFNEDGALAVLQQFKDSDLSHVQNKSAFLC LQQFKDSDLSHVQNKSAFLCGVMKTYRQRE K D S N K S 0 0 1 2 0 1 0 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1141.5364 O60506;F6UXX1 O60506 82 91 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.0061876 64.207 By MS/MS 1 0.7219 0.62323 NaN 1 Median NaN NaN NaN 0 0 Median 0.7219 0.62323 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1390700 895940 494800 0 0 0 1390700 895940 494800 0 0 0 0 0 0 0 0 0 0 0 0 5209 1619 5423 26455 26641 26641 1 DSDQLDVIQENR RLQAWLTRMTTSPPKDSDQLDVIQENRQLL PPKDSDQLDVIQENRQLLQLLTTYIVRENS K D S N R Q 0 1 1 3 0 2 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1430.6638 Q5T4S7;A0A0A0MSW0 Q5T4S7 1478 1489 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0047649 80.24 By MS/MS 1 0.67177 0.56173 NaN 1 Median NaN NaN NaN 0 0 Median 0.67177 0.56173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6025900 3529600 2496300 0 0 0 6025900 3529600 2496300 0 0 0 0 0 0 0 0 0 0 0 0 5210 3089 5424 26456 26642 26642 0 DSDSMETEEK VPGSTNTGTVPGSEKDSDSMETEEKTSSAF PGSEKDSDSMETEEKTSSAFVGKTPEASPE K D S E K T 0 0 0 2 0 0 3 0 0 0 0 1 1 0 0 2 1 0 0 0 0 0 10 0 1169.4394 A0A087WW66;Q99460;H7BZR6 A0A087WW66 293 302 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.00041856 89.355 By matching By MS/MS 1 1 1.0357 0.9701 0.28794 2 Median 0.9566 0.97207 NaN 1 0 Median 1.1212 0.96812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1523600 697330 826290 189180 94954 94224 1334400 602380 732060 0 0 0 0 0 0 0 0 0 0 0 0 5211 54 5425 26457;26458 26643;26644;26645;26646 26646 4 DSDYYNMLLK SAVKVLMKFLELLPKDSDYYNMLLKKLAPP ELLPKDSDYYNMLLKKLAPPLVTLLSGEPE K D S L K K 0 0 1 2 0 0 0 0 0 0 2 1 1 0 0 1 0 0 2 0 0 0 10 0 1260.5696 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 235 244 AP2B1 AP-2 complex subunit beta yes no 2 0.010069 44.395 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1428 1.1907 17.381 4 Median 1.1134 1.1024 NaN 1 0 Median 1.0998 0.99764 NaN 1 0 Median 1.173 1.286 NaN 1 0 Median 1.6699 1.4821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6542300 3330700 3211600 2872600 1498700 1373900 375160 192110 183050 3064300 1542000 1522300 230260 97910 132350 0 0 0 0 0 0 5212 128 5426 26459;26460;26461;26462 26647;26648 26648 2 DSEADRFSDSHNALR FSTLAGLVFEWTIVKDSEADRFSDSHNALR DSEADRFSDSHNALRILTFLESTYIPPSYI K D S L R I 2 2 1 3 0 0 1 0 1 0 1 0 0 1 0 3 0 0 0 0 0 0 15 1 1718.7608 Q8TEM1 Q8TEM1 164 178 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3;4 7.1867E-08 97.767 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 2 1 0.9818 1.09 17.218 12 Median 1.1191 1.2064 14.229 3 0 Plateau 1.2291 1.152 0.94843 2 0 Median 0.86023 1.0315 8.8665 4 0 Median 1.6458 1.4904 15.983 2 1 Median 0.90242 0.93562 NaN 1 0 Median NaN NaN NaN 0 0 Median 68105000 32581000 35524000 5067400 2407300 2660100 13989000 5632200 8356600 44250000 22514000 21735000 3561000 1314000 2247000 1238300 713380 524870 0 0 0 5213 3477 5427 26463;26464;26465;26466;26467;26468;26469;26470;26471;26472;26473;26474 26649;26650;26651;26652;26653;26654;26655;26656;26657;26658;26659;26660;26661 26658 13 DSEAELQR QVFEMKVKEKVQKLKDSEAELQRRHEQMKK EKVQKLKDSEAELQRRHEQMKKNLEAQHKE K D S Q R R 1 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 8 0 946.43559 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 354 361 SEPT7;DKFZp586I031 Septin-7 yes no 2 0.024653 43.246 By MS/MS 1 0.85964 0.84641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85964 0.84641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 950050 472710 477330 0 0 0 0 0 0 950050 472710 477330 0 0 0 0 0 0 0 0 0 5214 870 5428 26475 26662 26662 1 DSEDMGVVVSLGTGNR SLLGRKILAAIIMKKDSEDMGVVVSLGTGN SEDMGVVVSLGTGNRCVKGDSLSLKGETVN K D S N R C 0 1 1 2 0 0 1 3 0 0 1 0 1 0 0 2 1 0 0 3 0 0 16 0 1634.757 P55265;A0A3B3IRQ9 P55265 877 892 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 5.0002E-07 96.64 By matching By matching By MS/MS 1 1 3 0.99512 1.0195 21.565 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9554 1.0195 NaN 1 0 Median 0.99512 0.84882 NaN 1 0 Median 1.1863 1.2422 19.701 3 1 Median NaN NaN NaN 0 0 Median 19107000 9430300 9676900 0 0 0 0 0 0 5250900 2513500 2737400 1069000 448740 620240 12787000 6468100 6319300 0 0 0 5215 2498 5429;5430 26476;26477;26478;26479;26480 26663;26664;26665 26664 1186 3 DSEEAEIIR VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT IKVVDRDSEEAEIIRKYVKNTHATTHNAYD R D S I R K 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1060.5037 P09874 P09874 807 815 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 2.456E-05 155.1 By matching By MS/MS By MS/MS 1 3 4 1.19 1.0173 9.3623 7 Median NaN NaN NaN 0 0 Median 1.19 1.0173 NaN 1 0 Median 0.94925 1.0227 8.7456 2 0 Median 1.2536 1.0666 11.949 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249230000 114270000 134960000 0 0 0 2692200 1243100 1449100 69514000 33389000 36125000 177020000 79639000 97383000 0 0 0 0 0 0 5216 1922 5431 26481;26482;26483;26484;26485;26486;26487;26488 26666;26667;26668;26669;26670;26671;26672;26673;26674;26675;26676;26677;26678;26679;26680 26671 15 DSEEAEIIRK VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT KVVDRDSEEAEIIRKYVKNTHATTHNAYDL R D S R K Y 1 1 0 1 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 10 1 1188.5986 P09874 P09874 807 816 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.2024E-40 219.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 5 6 1 1.1206 1.1166 25.458 11 Median 0.89039 0.92468 NaN 1 0 Median 0.60328 0.56435 NaN 1 0 Median 0.99488 1.1261 16.769 3 0 Median 1.1844 1.1382 13.429 5 1 Median NaN NaN NaN 0 0 Median 1.1206 0.99732 NaN 1 0 Median 168920000 75497000 93423000 2669300 1428700 1240500 6081900 3990600 2091300 61616000 27636000 33980000 96815000 41460000 55355000 0 0 0 1738500 981960 756540 5217 1922 5432 26489;26490;26491;26492;26493;26494;26495;26496;26497;26498;26499;26500;26501;26502 26681;26682;26683;26684;26685;26686;26687;26688;26689;26690;26691;26692;26693;26694;26695;26696;26697;26698;26699;26700;26701;26702 26694 22 DSEEPFSSVEIQAALSK AQSIGMNRLTESINRDSEEPFSSVEIQAAL EEPFSSVEIQAALSKMQDDNQVMVSEGIIF R D S S K M 2 0 0 1 0 1 3 0 0 1 1 1 0 1 1 4 0 0 0 1 0 0 17 0 1835.8789 P25205;J3KQ69;A0A499FHX9 P25205 775 791 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0011286 38.021 By MS/MS By MS/MS 1 1 0.83069 0.78039 0.23088 2 Median 0.78244 0.78166 NaN 1 0 Median 0.88191 0.77911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4202000 2366200 1835700 1948500 1046700 901780 2253400 1319500 933960 0 0 0 0 0 0 0 0 0 0 0 0 5218 2129 5433 26503;26504 26703;26704 26704 2 DSEGVDIK AKRLSMYGVDLHHAKDSEGVDIKLGVCANG VDLHHAKDSEGVDIKLGVCANGLLIYKDRL K D S I K L 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 8 0 861.40798 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 413 420 EPB41L2 Band 4.1-like protein 2 yes no 2 0.0072183 67.981 By MS/MS 1 1.1812 1.0074 NaN 1 Median NaN NaN NaN 0 0 Median 1.1812 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5319700 2409100 2910600 0 0 0 5319700 2409100 2910600 0 0 0 0 0 0 0 0 0 0 0 0 5219 1573 5434 26505 26705;26706 26705 2 DSEKENQIPEEAGSSGLGK KWQKGIGEFFRLSPKDSEKENQIPEEAGSS ENQIPEEAGSSGLGKAKRNQEPPILQHTEQ K D S G K A 1 0 1 1 0 1 4 3 0 1 1 2 0 0 1 3 0 0 0 0 0 0 19 1 1973.9178 H0YMA4;A0A0U1RQM0;Q15004;H0YKX3 H0YMA4 75 93 KIAA0101 PCNA-associated factor yes no 3 0.00016868 37.552 By MS/MS 1 0.69329 0.70773 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69329 0.70773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3191600 1903600 1288000 0 0 0 0 0 0 3191600 1903600 1288000 0 0 0 0 0 0 0 0 0 5220 302 5435 26506 26707;26708 26708 2 DSENLASPSEYPENGER LKNLNNSNLFSPVNRDSENLASPSEYPENG ENLASPSEYPENGERFSFLSKPVDENHQQD R D S E R F 1 1 2 1 0 0 4 1 0 0 1 0 0 0 2 3 0 0 1 0 0 0 17 0 1892.8024 P52948;A0A3B3ITD8 P52948 617 633 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 2.0884E-05 66.498 By MS/MS By MS/MS 1 1 0.79621 0.76515 11.772 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65689 0.70404 NaN 1 0 Median 0.96508 0.83157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5873400 3034100 2839300 0 0 0 0 0 0 3770300 2151600 1618800 2103100 882570 1220500 0 0 0 0 0 0 5221 2462 5436 26507;26508 26709;26710;26711 26709 3 DSEPLGIEEAQIGKR TITFPAMVHRTAGQKDSEPLGIEEAQIGKR DSEPLGIEEAQIGKRGYLTPTSAREHLSAL K D S K R G 1 1 0 1 0 1 3 2 0 2 1 1 0 0 1 1 0 0 0 0 0 0 15 1 1640.837 O95602;B9ZVN9 O95602 239 253 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 1.1217E-06 86.944 By MS/MS By matching 1 1 0.95089 1.023 15.28 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76589 0.91823 NaN 1 0 Median 1.1806 1.1397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9070600 4581300 4489300 0 0 0 0 0 0 8501400 4320300 4181100 569150 260990 308160 0 0 0 0 0 0 5222 1781 5437 26509;26510 26712;26713 26713 2 DSETGENIR LKEEISKMRELLARKDSETGENIRQAASSL ELLARKDSETGENIRQAASSLQQASLKLFE K D S I R Q 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1019.452 P38646 P38646 626 634 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00049537 120.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.3598 1.1749 14.178 5 Median 1.1025 1.0516 NaN 1 0 Median 1.3598 1.1749 NaN 1 0 Median 1.1374 1.2123 NaN 1 0 Median 1.4016 1.1736 NaN 1 0 Median 1.4552 1.5437 NaN 1 0 Median NaN NaN NaN 0 0 Median 36126000 15550000 20577000 9901700 4386600 5515100 22532000 9500900 13032000 2144300 1034500 1109800 850070 358530 491540 697840 269210 428630 0 0 0 5223 2277 5438 26511;26512;26513;26514;26515 26714;26715;26716;26717;26718;26719;26720;26721 26718 8 DSETSFVPTNMAVNYVQHNR DAKARLLAEQQNKKKDSETSFVPTNMAVNY FVPTNMAVNYVQHNRFYHEELNAPIRRNKE K D S N R F 1 1 3 1 0 1 1 0 1 0 0 0 1 1 1 2 2 0 1 3 0 0 20 0 2308.0542 Q9NZ63 Q9NZ63 207 226 C9orf78 Uncharacterized protein C9orf78 yes yes 3 5.8047E-06 46.159 By matching By MS/MS By matching By matching 1 1 2 1 1.0546 0.89943 40.953 4 Median NaN NaN NaN 0 0 Median 0.88467 0.76376 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98902 0.8359 33.483 2 0 Median 1.5745 1.6615 NaN 1 0 Median NaN NaN NaN 0 0 Median 6605400 2096000 4509400 0 0 0 187850 100800 87054 5115200 1396900 3718300 299240 156570 142660 1003100 441760 561330 0 0 0 5224 4185 5439 26516;26517;26518;26519;26520 26722;26723 26723 2 DSFDDRGPSLNPVLDYDHGSR RVPRDDWEEKRHFRRDSFDDRGPSLNPVLD GPSLNPVLDYDHGSRSQESGYYDRMDYEDD R D S S R S 0 2 1 5 0 0 0 2 1 0 2 0 0 1 2 3 0 0 1 1 0 0 21 1 2361.0622 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 187 207 MATR3 Matrin-3 yes no 3;4 3.8774E-09 58.093 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 5 3 0.79679 0.84197 25.688 14 Median 1.09 1.211 NaN 1 0 Median 0.86895 0.83774 NaN 1 0 Median 0.73376 0.84785 14.743 3 0 Median 0.81729 0.80012 NaN 1 0 Median 0.77883 0.84621 14.69 5 0 Median 0.71466 0.64605 38.86 3 0 Median 146920000 80721000 66196000 2369600 1225900 1143700 607730 318150 289580 86312000 47547000 38765000 947330 402770 544550 55346000 30485000 24861000 1335400 742360 593000 5225 297 5440 26521;26522;26523;26524;26525;26526;26527;26528;26529;26530;26531;26532;26533;26534 26724;26725;26726;26727;26728;26729;26730;26731 26724 8 DSFHHNVAALR QLQALNVPFMLVDMKDSFHHNVAALRASVE VDMKDSFHHNVAALRASVETGFAKKTFISY K D S L R A 2 1 1 1 0 0 0 0 2 0 1 0 0 1 0 1 0 0 0 1 0 0 11 0 1265.6265 Q9BRQ8 Q9BRQ8 44 54 AIFM2 Apoptosis-inducing factor 2 yes yes 3 0.0004097 58.63 By MS/MS By matching 2 1 1.1683 1.0031 77.29 3 Median NaN NaN NaN 0 0 Median 0.64293 0.54839 85.404 2 0 Median NaN NaN NaN 0 0 Median 1.4729 1.2646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052100 2289200 1762900 0 0 0 3587700 2012900 1574800 0 0 0 464420 276290 188130 0 0 0 0 0 0 5226 3800 5441 26535;26536;26537 26732;26733 26733 2 DSGAALYVFSEFNR GPNTVYLQVVAAGSRDSGAALYVFSEFNRY RDSGAALYVFSEFNRYLFNCGEGVQRLMQE R D S N R Y 2 1 1 1 0 0 1 1 0 0 1 0 0 2 0 2 0 0 1 1 0 0 14 0 1574.7365 Q9BQ52;V9GZ72 Q9BQ52 69 82 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.0083895 50.292 By MS/MS 2 1.0076 0.99962 4.5454 2 Median 1.0076 0.99962 4.5454 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2824300 1391800 1432500 2824300 1391800 1432500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5227 3782 5442 26538;26539 26734;26735 26734 2 DSGNIPEAIASYR PAFADAHSNLASIHKDSGNIPEAIASYRTA HKDSGNIPEAIASYRTALKLKPDFPDAYCN K D S Y R T 2 1 1 1 0 0 1 1 0 2 0 0 0 0 1 2 0 0 1 0 0 0 13 0 1391.6681 O15294 O15294 441 453 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 5.2825E-07 107.06 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.85795 0.89322 11.093 5 Linear 0.85795 0.82959 NaN 1 0 Median 0.93807 0.81115 NaN 1 0 Median 0.87485 0.93265 NaN 1 0 Median 0.85585 0.72987 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84393 0.70553 NaN 1 0 Median 13594000 6771900 6822200 4911200 2050200 2861000 1449200 794650 654540 5852300 3088500 2763800 1107200 700790 406370 0 0 0 274170 137730 136450 5228 1537 5443 26540;26541;26542;26543;26544 26736;26737;26738;26739;26740;26741 26739 6 DSGNKPPGLLPR INLQLRPSLITGIMKDSGNKPPGLLPRKGL IMKDSGNKPPGLLPRKGLYMANDLKLLRHH K D S P R K 0 1 1 1 0 0 0 2 0 0 2 1 0 0 3 1 0 0 0 0 0 0 12 1 1249.6779 Q9Y2Q3;E9PFN5;C9JNT3 Q9Y2Q3 50 61 GSTK1 Glutathione S-transferase kappa 1 yes no 3 0.010188 45.077 By MS/MS 1 0.80941 0.7574 NaN 1 Median NaN NaN NaN 0 0 Median 0.80941 0.7574 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537800 678620 859130 0 0 0 1537800 678620 859130 0 0 0 0 0 0 0 0 0 0 0 0 5229 4386 5444 26545 26742 26742 1 DSGPLPTPPGVSLLGEPPKDYR APVGLRGSGLRGLQKDSGPLPTPPGVSLLG PPGVSLLGEPPKDYRIPLNPYLNLHSLLPA K D S Y R I 0 1 0 2 0 0 1 3 0 0 3 1 0 0 6 2 1 0 1 1 0 0 22 1 2291.1798 A0A087WZ13;E9PAU2 A0A087WZ13 482 503 RAVER1 yes no 3 0.032346 20.439 By MS/MS 1 0.40032 0.42585 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40032 0.42585 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1366000 1023300 342740 0 0 0 0 0 0 1366000 1023300 342740 0 0 0 0 0 0 0 0 0 5230 90 5445 26546 26743 26743 1 DSGPLSDPITGKPYVPLLEAEEVR PELRLQSDDILPLGKDSGPLSDPITGKPYV TGKPYVPLLEAEEVRLSQSLLELWRRRGPV K D S V R L 1 1 0 2 0 0 3 2 0 1 3 1 0 0 4 2 1 0 1 2 0 0 24 1 2581.3275 H7BXY3;Q7L2E3 H7BXY3 361 384 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.010848 19.324 By MS/MS 1 0.57675 0.63905 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57675 0.63905 NaN 1 0 Median NaN NaN NaN 0 0 Median 2100600 1257200 843470 0 0 0 0 0 0 0 0 0 0 0 0 2100600 1257200 843470 0 0 0 5231 1244 5446 26547 26744 26744 1 DSGPPPSTVSEAEFEDIMK TYMKASAPYNHHGSRDSGPPPSTVSEAEFE PPSTVSEAEFEDIMKRNRAISSSAISKAVS R D S M K R 1 0 0 2 0 0 3 1 0 1 0 1 1 1 3 3 1 0 0 1 0 0 19 0 2034.9092 Q8N684;F5H669 Q8N684 324 342 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 3.2483E-07 62.042 By MS/MS By matching 1 1 0.66806 0.61753 1.121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6377 0.62244 NaN 1 0 Median 0.69986 0.61265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10359000 5807300 4551200 0 0 0 0 0 0 9927800 5535200 4392500 430740 272020 158720 0 0 0 0 0 0 5232 3385 5447 26548;26549 26745;26746 26745 2 DSGPPPSTVSEAEFEDIMKR TYMKASAPYNHHGSRDSGPPPSTVSEAEFE PSTVSEAEFEDIMKRNRAISSSAISKAVSG R D S K R N 1 1 0 2 0 0 3 1 0 1 0 1 1 1 3 3 1 0 0 1 0 0 20 1 2191.0103 Q8N684;F5H669 Q8N684 324 343 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 3 4.5513E-11 94.384 By MS/MS By matching By matching By matching 3 3 1 1 0.72646 0.70677 14.838 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5911 0.66611 22.924 3 0 Median 0.68043 0.63851 10.925 3 0 Median 0.7835 0.79206 NaN 1 0 Median 0.89444 0.74991 NaN 1 0 Median 51725000 31290000 20435000 0 0 0 0 0 0 46457000 28483000 17974000 2331400 1241400 1090000 1234800 680070 554760 1701900 885440 816410 5233 3385 5448;5449 26550;26551;26552;26553;26554;26555;26556;26557 26747;26748;26749;26750;26751 26749 1719 5 DSGRGDSVSDSGSDALR INAKAKRRLRKNSSRDSGRGDSVSDSGSDA GRGDSVSDSGSDALRSGLTVPTSPKGRLLD R D S L R S 1 2 0 4 0 0 0 3 0 0 1 0 0 0 0 5 0 0 0 1 0 0 17 1 1679.7347 Q53EL6;Q5VZS7 Q53EL6 70 86 PDCD4 Programmed cell death protein 4 yes no 3 8.8121E-05 46.249 By MS/MS By MS/MS 1 1 0.9508 0.90735 45.195 2 Median 0.65273 0.65915 NaN 1 0 Median 1.385 1.249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3940700 2208100 1732600 2802600 1661900 1140700 1138000 546190 591820 0 0 0 0 0 0 0 0 0 0 0 0 5234 3026 5450 26558;26559 26752;26753;26754 26753 3 DSGSQEVLSELR ELSQDAEPAGSQETKDSGSQEVLSELRVLS ETKDSGSQEVLSELRVLSQKLKENHQSRKQ K D S L R V 0 1 0 1 0 1 2 1 0 0 2 0 0 0 0 3 0 0 0 1 0 0 12 0 1318.6365 Q9BVJ6;X6RJY0 Q9BVJ6 450 461 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 2 5.734E-22 163.64 By MS/MS 1 1.2054 1.2275 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2054 1.2275 NaN 1 1 Median NaN NaN NaN 0 0 Median 11286000 5214300 6071400 0 0 0 0 0 0 0 0 0 0 0 0 11286000 5214300 6071400 0 0 0 5235 3855 5451 26560 26755 26755 1 DSGYLHLLYK FAGVEEAREQNERNRDSGYLHLLYKRPLDP NERNRDSGYLHLLYKRPLDPKSEAQLQEIR R D S Y K R 0 0 0 1 0 0 0 1 1 0 3 1 0 0 0 1 0 0 2 0 0 0 10 0 1207.6237 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 779 788 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.00065216 95.815 By MS/MS By matching 1 2 1.1298 1.1425 11.529 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0371 1.1425 NaN 1 0 Median 1.3076 1.1548 16.28 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21587000 10891000 10696000 0 0 0 0 0 0 20140000 10226000 9914100 1447000 665360 781630 0 0 0 0 0 0 5236 467 5452 26561;26562;26563 26756 26756 1 DSIEKEHVEEISELFYDAK QLLTPANLLAKINGKDSIEKEHVEEISELF KEHVEEISELFYDAKSSAKILADQQDKYMK K D S A K S 1 0 0 2 0 0 5 0 1 2 1 2 0 1 0 2 0 0 1 1 0 0 19 1 2280.0798 Q9Y265;H7C4G5 Q9Y265 423 441 RUVBL1 RuvB-like 1 yes no 3 0.00027069 47.082 By MS/MS 1 0.9561 0.99938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9561 0.99938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10603000 4668100 5934600 0 0 0 0 0 0 10603000 4668100 5934600 0 0 0 0 0 0 0 0 0 5237 4375 5453 26564 26757 26757 1 DSIFEPAK FLYSELMKYNSQTAKDSIFEPAKGGEKLQI YNSQTAKDSIFEPAKGGEKLQIKKTVSFHL K D S A K G 1 0 0 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 905.44945 P55265;A0A3B3IRQ9;A0A3B3ISU1 P55265 937 944 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.047416 35.295 By MS/MS 1 0.7018 0.72572 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7018 0.72572 NaN 1 0 Median NaN NaN NaN 0 0 Median 3463100 2007700 1455400 0 0 0 0 0 0 0 0 0 0 0 0 3463100 2007700 1455400 0 0 0 5238 2498 5454 26565 26758 26758 1 DSIFSNLTGQLDYQGFEK LNDKVKKKALTSFERDSIFSNLTGQLDYQG FSNLTGQLDYQGFEKADMVIEAVFEDLSLK R D S E K A 0 0 1 2 0 2 1 2 0 1 2 1 0 2 0 2 1 0 1 0 0 0 18 0 2060.9691 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21 H0YFD6 423 440 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.0031207 31.228 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.2651 1.2128 38.755 5 Median 1.0485 0.99253 NaN 1 0 Median 1.3809 1.2128 NaN 1 0 Median 0.55443 0.53207 NaN 1 0 Median 1.5672 1.3736 NaN 1 0 Median 1.2651 1.2982 NaN 1 0 Median NaN NaN NaN 0 0 Median 9717300 4353300 5364000 4519100 2101000 2418000 3338000 1320000 2017900 869440 525430 344010 77466 41647 35820 913300 365120 548180 0 0 0 5239 1180 5455 26566;26567;26568;26569;26570 26759 26759 1 DSIHLTPVLTSSILNQLTGR CISFADVEKAHINIRDSIHLTPVLTSSILN TPVLTSSILNQLTGRNLFFKCELFQKTGSF R D S G R N 0 1 1 1 0 1 0 1 1 2 4 0 0 0 1 3 3 0 0 1 0 0 20 0 2164.1852 Q3ZK31;I3L4W4;I3L3N0;I3L4B4;Q9GZT4 Q3ZK31 21 40 SRR Serine racemase yes no 3 1.3874E-21 109.54 By MS/MS 1 1.4554 1.2187 NaN 1 Median NaN NaN NaN 0 0 Median 1.4554 1.2187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3039300 1131300 1908100 0 0 0 3039300 1131300 1908100 0 0 0 0 0 0 0 0 0 0 0 0 5240 1288 5456 26571 26760 26760 1 DSIKLDDDSER FRFMATNDLMTELQKDSIKLDDDSERKVVK ELQKDSIKLDDDSERKVVKMILKLLEDKNG K D S E R K 0 1 0 4 0 0 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 11 1 1291.5892 Q86VP6;F5H6I6 Q86VP6 37 47 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 0.00092236 98.048 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.0288 1.0395 14.431 8 Median 0.98129 1.0195 0.91999 2 0 Median 1.0262 0.96688 5.6028 2 0 Median 1.0041 1.1418 11.448 2 0 Median 1.393 1.3387 7.1831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20264000 10166000 10098000 6596400 3311500 3284900 7322400 3648600 3673900 5119900 2678500 2441400 1225300 527530 697760 0 0 0 0 0 0 5241 3288 5457 26572;26573;26574;26575;26576;26577;26578;26579 26761;26762;26763;26764;26765;26766;26767;26768;26769;26770;26771 26767 11 DSILSEMK MQQIETQQRKFKASRDSILSEMKMLKEKRQ RKFKASRDSILSEMKMLKEKRQQSEKTFMP R D S M K M 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 8 0 921.44773 Q9UQE7 Q9UQE7 733 740 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.003577 87.754 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 3 0.97188 1.0006 16.116 8 Median NaN NaN NaN 0 0 Median 1.2061 1.0487 NaN 1 0 Median 0.95958 1.0348 NaN 1 0 Median 1.2757 1.0761 NaN 1 0 Median 0.96177 1.0006 4.1303 2 0 Median 0.89802 0.77506 12.185 3 0 Median 22518000 11245000 11273000 0 0 0 1417400 673860 743520 6175300 3273600 2901700 608710 274150 334550 12899000 6273900 6625500 1417300 749420 667910 5242 4362 5458 26580;26581;26582;26583;26584;26585;26586;26587 26772;26773;26774 26774 3 DSIQSHQESLSVLR LSMKFVSSLLTALFRDSIQSHQESLSVLRS RDSIQSHQESLSVLRSSNEFMRYAVNVALQ R D S L R S 0 1 0 1 0 2 1 0 1 1 2 0 0 0 0 4 0 0 0 1 0 0 14 0 1597.806 Q9NVI1 Q9NVI1 820 833 FANCI Fanconi anemia group I protein yes yes 3 0.00014256 68.034 By MS/MS By matching By matching 1 1 1 1.4112 1.3645 13.041 3 Plateau 1.4112 1.3645 NaN 1 0 Median 1.2349 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5026 1.2784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9792200 4428100 5364100 5195200 2455000 2740300 1800000 890360 909660 0 0 0 2796900 1082700 1714200 0 0 0 0 0 0 5243 4132 5459 26588;26589;26590 26775 26775 1 DSIVAELDR AVRMFADYLAHESRRDSIVAELDREMSRSV AHESRRDSIVAELDREMSRSVDVTNTTFLL R D S D R E 1 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1016.5138 O14579;M0QXB4 O14579 98 106 COPE Coatomer subunit epsilon yes no 2 0.029261 50.04 By MS/MS 1 1.2334 1.2083 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2334 1.2083 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2346100 1215400 1130800 0 0 0 0 0 0 2346100 1215400 1130800 0 0 0 0 0 0 0 0 0 5244 1409 5460 26591 26776 26776 1 DSIVHQAGMLK NVSLLYDLENLPASKDSIVHQAGMLKRNCF PASKDSIVHQAGMLKRNCFASVFEKYFQFQ K D S L K R 1 0 0 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1197.6176 O15144 O15144 107 117 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2;3 0.00014645 105.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1984 1.1377 23.606 7 Median 1.1984 1.1377 NaN 1 0 Median 1.7715 1.4949 9.7895 2 0 Median 1.2994 1.2457 24.555 2 0 Median 1.064 0.90165 2.4358 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31110000 13243000 17867000 5581200 2175400 3405700 11337000 4514200 6822700 10407000 4546700 5860000 3785400 2007000 1778500 0 0 0 0 0 0 5245 1526 5461 26592;26593;26594;26595;26596;26597;26598 26777;26778;26779;26780;26781;26782;26783;26784;26785;26786;26787 26782 11 DSIVHQAGMLKR NVSLLYDLENLPASKDSIVHQAGMLKRNCF ASKDSIVHQAGMLKRNCFASVFEKYFQFQE K D S K R N 1 1 0 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 12 1 1353.7187 O15144 O15144 107 118 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2;3 3.1004E-05 89.403 By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 1.3374 1.2887 10.257 6 Median 1.1938 1.2052 9.1659 2 0 Median 1.5317 1.368 NaN 1 1 Median 1.4071 1.5338 NaN 1 0 Median 1.3374 1.2621 3.2542 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83476000 35983000 47493000 56027000 24503000 31524000 8106500 3414700 4691800 3071100 1450300 1620900 16272000 6614900 9656700 0 0 0 0 0 0 5246 1526 5462 26599;26600;26601;26602;26603;26604 26788;26789;26790;26791;26792;26793 26788 6 DSIVQGFQWGTR TLPSEVDKALLGSVKDSIVQGFQWGTREGP SVKDSIVQGFQWGTREGPLCDELIRNVKFK K D S T R E 0 1 0 1 0 2 0 2 0 1 0 0 0 1 0 1 1 1 0 1 0 0 12 0 1392.6786 Q15029;K7EP67;K7EJ74 Q15029 764 775 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 3.0793E-06 138.66 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 2 1 5 2 1.1016 1.3029 15.857 13 Linear 1.1635 1.123 NaN 1 0 Median 0.92325 0.81651 24.691 2 0 Median 1.0555 1.14 1.0769 2 0 Median 1.275 1.0674 NaN 1 0 Median 1.1016 1.1101 5.4658 5 1 Median 1.1162 0.93724 21.492 2 0 Median 68423000 32897000 35526000 7624100 3476300 4147800 3199400 1457000 1742400 20886000 9960200 10926000 245190 107060 138130 35296000 17370000 17926000 1171700 526620 645110 5247 2917 5463 26605;26606;26607;26608;26609;26610;26611;26612;26613;26614;26615;26616;26617 26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806 26795 13 DSKPHFTTVFQNSVYK PANAGKTPLCNLLVKDSKPHFTTVFQNSVY SKPHFTTVFQNSVYKVLEVVKE________ K D S Y K V 0 0 1 1 0 1 0 0 1 0 0 2 0 2 1 2 2 0 1 2 0 0 16 1 1896.937 A0A1B0GW05;Q2PZI1;H7C3M5 A0A1B0GW05 726 741 DPY19L1 Probable C-mannosyltransferase DPY19L1 yes no 3 0.044661 13.559 By MS/MS By matching 2 1 0.73708 0.80298 38.471 3 Median 0.73708 0.80298 0 2 0 Median 1.6416 1.5635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28002000 15203000 12799000 23441000 13460000 9980400 4561400 1742600 2818800 0 0 0 0 0 0 0 0 0 0 0 0 5248 326 5464 26618;26619;26620 26807 26807 1 DSKPIALKEEIVTPK SEKHLVKDLKAQGTRDSKPIALKEEIVTPK DSKPIALKEEIVTPKETETSEKETPPPLPT R D S P K E 1 0 0 1 0 0 2 0 0 2 1 3 0 0 2 1 1 0 0 1 0 0 15 2 1666.9505 Q9NYV4;J3QSD7 Q9NYV4 502 516 CDK12 Cyclin-dependent kinase 12 yes no 3 0.0014638 36.022 By matching By matching By MS/MS By matching 1 1 2 1 0.73832 0.77491 18.169 5 Median 0.87063 0.95321 NaN 1 0 Median 0.89736 1.032 NaN 1 0 Median 0.60758 0.7169 11.005 2 0 Median 0.73832 0.7483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13707000 7721600 5985600 2631900 1143900 1488000 1247200 832170 415020 8956600 5298100 3658500 871550 447450 424090 0 0 0 0 0 0 5249 4180 5465 26621;26622;26623;26624;26625 26808;26809 26808 2 DSLDPSFTHALR ______________________________ AEKDSLDPSFTHALRLVNQEIEKFQKGEGK K D S L R L 1 1 0 2 0 0 0 0 1 0 2 0 0 1 1 2 1 0 0 0 0 0 12 0 1357.6626 O75525 O75525 14 25 KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 3 yes yes 2 0.001379 53.683 By MS/MS 1 0.42046 0.42375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42046 0.42375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2791600 1938300 853330 0 0 0 0 0 0 2791600 1938300 853330 0 0 0 0 0 0 0 0 0 5250 1680 5466 26626 26810 26810 1 DSLDPSFTHAMQLLTAEIEK MEPENKYLPELMAEKDSLDPSFTHAMQLLT SFTHAMQLLTAEIEKIQKGDSKKDDEENYL K D S E K I 2 0 0 2 0 1 2 0 1 1 3 1 1 1 1 2 2 0 0 0 0 0 20 0 2245.0936 Q07666 Q07666 112 131 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 3.4462E-07 60.628 By matching By MS/MS By matching By matching By matching 1 6 2 1 1 0.81262 0.81202 28.265 11 Median NaN NaN NaN 0 0 Median 1.1793 1.0513 NaN 1 0 Median 0.80331 0.80751 34.538 6 0 Median 1.1146 0.96944 3.6472 2 0 Median 0.71509 0.73522 NaN 1 0 Median 0.7548 0.62877 NaN 1 0 Median 126780000 72395000 54381000 0 0 0 468220 200280 267940 123980000 71019000 52966000 1413700 657560 756180 486000 246250 239750 423170 272560 150610 5251 2731 5467;5468 26627;26628;26629;26630;26631;26632;26633;26634;26635;26636;26637 26811;26812;26813;26814 26811 1415 4 DSLGAYASQDANEQGQDLGKR SSRDVSLGDWEFGKRDSLGAYASQDANEQG ASQDANEQGQDLGKRDHHGRYSSQDADEQD R D S K R D 3 1 1 3 0 3 1 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 21 1 2222.02 Q9C0C2;A0A2R8Y5C4 Q9C0C2 892 912 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 3 2.0539E-25 101.49 By MS/MS 1 1.602 1.9199 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.602 1.9199 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15716000 6092700 9623500 0 0 0 0 0 0 15716000 6092700 9623500 0 0 0 0 0 0 0 0 0 5252 3903 5469 26638 26815 26815 1 DSLGAYSETHSDDVTQVR FWDARMNSQNLSTTKDSLGAYSETHSDDVT GAYSETHSDDVTQVRFHPSNPNMVVSGSSD K D S V R F 1 1 0 3 0 1 1 1 1 0 1 0 0 0 0 3 2 0 1 2 0 0 18 0 1978.8868 G3V4B8;Q96FK6 G3V4B8 160 177 WDR89 WD repeat-containing protein 89 yes no 3 1.7054E-11 100.35 By MS/MS By MS/MS 1 1 1.1577 1.1254 2.4319 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0125 1.1062 NaN 1 0 Median 1.3237 1.1449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20597000 9767400 10829000 0 0 0 0 0 0 17863000 8489200 9374000 2733300 1278200 1455100 0 0 0 0 0 0 5253 1114 5470 26639;26640 26816;26817;26818 26816 3 DSLHEKFPDAGEDELLK DKIPYGMRFIAKVLKDSLHEKFPDAGEDEL LHEKFPDAGEDELLKIIGNLLYYRYMNPAI K D S L K I 1 0 0 3 0 0 3 1 1 0 3 2 0 1 1 1 0 0 0 0 0 0 17 1 1941.932 P46940;A0A0J9YXZ5;H0YLE8 P46940 1169 1185 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.00017029 41.422 By MS/MS By MS/MS 1 1 0.95761 0.91888 2.5385 2 Median 0.94722 0.90253 NaN 1 0 Median 0.96812 0.93552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22223000 11261000 10962000 18820000 9555200 9264400 3403600 1705900 1697700 0 0 0 0 0 0 0 0 0 0 0 0 5254 2350 5471 26641;26642 26819;26820;26821 26819 3 DSLHQPQYVEK AEWIQQNNILSIVLRDSLHQPQYVEKLEKI IVLRDSLHQPQYVEKLEKILRFVIKEKALT R D S E K L 0 0 0 1 0 2 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 11 0 1342.6517 Q93008 Q93008 402 412 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 0.022444 35.677 By MS/MS 1 4.4455 3.9186 NaN 1 Median NaN NaN NaN 0 0 Median 4.4455 3.9186 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9371400 2472000 6899400 0 0 0 9371400 2472000 6899400 0 0 0 0 0 0 0 0 0 0 0 0 5255 3573 5472 26643 26822 26822 1 DSLIFLVDASK EENLEASGDYKYSGRDSLIFLVDASKAMFE YSGRDSLIFLVDASKAMFESQSEDELTPFD R D S S K A 1 0 0 2 0 0 0 0 0 1 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1206.6496 P12956 P12956 36 46 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00045842 69.276 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 2 2 1.1217 1.1205 9.1186 12 Median 1.054 1.0213 3.8419 2 0 Median 1.3538 1.1606 2.8565 2 0 Median 1.0494 1.041 9.8766 3 0 Median 1.3493 1.1493 NaN 1 0 Median 1.075 1.0745 4.2647 2 0 Median 1.5498 1.2483 13.601 2 0 Median 79182000 35843000 43339000 13520000 6223200 7296600 22672000 9212900 13459000 33512000 16237000 17275000 2921200 1250000 1671200 3554100 1790800 1763300 3002500 1129300 1873200 5256 1985 5473 26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655 26823;26824;26825;26826;26827;26828;26829 26828 7 DSLIIIDELGR AEMLETASILRSATKDSLIIIDELGRGTST SATKDSLIIIDELGRGTSTYDGFGLAWAIS K D S G R G 0 1 0 2 0 0 1 1 0 3 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.682 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y713 P43246 742 752 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0018837 56.563 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.97331 0.85628 24.671 5 Median 0.86208 0.85628 NaN 1 0 Median 0.97331 0.84595 NaN 1 0 Median 0.97879 1.0455 NaN 1 0 Median 0.90382 0.78243 43.266 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9580500 4942600 4637900 1776700 1041400 735320 2060100 1075700 984460 4724200 2366600 2357600 1019500 458990 560530 0 0 0 0 0 0 5257 2324 5474 26656;26657;26658;26659;26660 26830;26831;26832;26833 26832 4 DSLINLK YLAVRPFLPKKKQQKDSLINLKIQKENPKV LPKKKQQKDSLINLKIQKENPKVVNEINIE K D S L K I 0 0 1 1 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 7 0 801.45962 Q8N5K1;D6RCF4 Q8N5K1 68 74 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 0.011345 80.377 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.5939 1.3043 12.597 5 Median 1.5115 1.4018 23.817 2 0 Median 1.647 1.3571 NaN 1 0 Median 1.28 1.2815 NaN 1 0 Median 1.5939 1.3043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20598000 8103400 12494000 9917100 4040200 5876900 8226000 3095800 5130200 1732600 700780 1031800 722180 266610 455570 0 0 0 0 0 0 5258 3379 5475 26661;26662;26663;26664;26665 26834;26835;26836;26837;26838;26839;26840 26838 7 DSLLGDKGQTAR KEDVNEAIRLMEMSKDSLLGDKGQTARTQR MSKDSLLGDKGQTARTQRPADVIFATVREL K D S A R T 1 1 0 2 0 1 0 2 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 1 1259.647 P33993 P33993 642 653 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.00068525 49.448 By MS/MS By matching 1 1 0.76185 0.7941 15.728 2 Median 0.86772 0.88751 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6689 0.71051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4902200 2695200 2206900 2248800 1152900 1095900 0 0 0 2653300 1542300 1111000 0 0 0 0 0 0 0 0 0 5259 2225 5476 26666;26667 26841 26841 1 DSLLQDGEFSMDLR VNGLTLGGQKCSVIRDSLLQDGEFSMDLRT RDSLLQDGEFSMDLRTKSTGGAPTFNVTVT R D S L R T 0 1 0 3 0 1 1 1 0 0 3 0 1 1 0 2 0 0 0 0 0 0 14 0 1624.7403 P07737;K7EJ44 P07737 76 89 PFN1 Profilin-1 yes no 2 0.00017162 82.417 By matching By MS/MS By matching 1 2 1 1.0808 1.0275 42.809 4 Median NaN NaN NaN 0 0 Median 1.0969 0.92875 NaN 1 0 Median 1.0153 1.0275 6.3078 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0227 2.3191 NaN 1 0 Median 60526000 27745000 32780000 0 0 0 2058300 938330 1120000 57794000 26618000 31176000 0 0 0 0 0 0 673100 188820 484290 5260 1889 5477;5478 26668;26669;26670;26671 26842;26843;26844;26845 26843 659 4 DSLSMAAR VAVMAALGVAVDGGKDSLSMAARVGTETVR VAVDGGKDSLSMAARVGTETVRAPGSLVIS K D S A R V 2 1 0 1 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 8 0 849.40145 O15067 O15067 804 811 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.012836 54.205 By MS/MS 1 0.8592 0.73115 NaN 1 Median NaN NaN NaN 0 0 Median 0.8592 0.73115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3508400 1839300 1669000 0 0 0 3508400 1839300 1669000 0 0 0 0 0 0 0 0 0 0 0 0 5261 1518 5479 26672 26846 26846 1 DSLSPGQERPYSTVR GRLLPQVLNSWSIGRDSLSPGQERPYSTVR DSLSPGQERPYSTVRTKVYAILELWVQVCG R D S V R T 0 2 0 1 0 1 1 1 0 0 1 0 0 0 2 3 1 0 1 1 0 0 15 1 1690.8275 Q8IZL8;C9JFV4 Q8IZL8 414 428 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 3 6.2359E-05 74.769 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.411 1.2755 36.263 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4002 1.6312 44.455 2 0 Median 1.8928 1.7807 1.6878 2 0 Median 0.8133 0.88173 0.71722 2 0 Median 1.411 1.2755 NaN 1 0 Median 41867000 21125000 20742000 0 0 0 0 0 0 14875000 7084700 7790500 5569300 2271600 3297700 18742000 10607000 8135400 2680100 1162200 1517900 5262 3351 5480 26673;26674;26675;26676;26677;26678;26679 26847;26848;26849;26850;26851;26852 26850 5 DSLSVNEFK VVTTFFTFARQEGRKDSLSVNEFKELVTQQ RQEGRKDSLSVNEFKELVTQQLPHLLKDVG K D S F K E 0 0 1 1 0 0 1 0 0 0 1 1 0 1 0 2 0 0 0 1 0 0 9 0 1037.5029 Q99584 Q99584 31 39 S100A13 Protein S100-A13 yes yes 2 0.0020081 75.213 By MS/MS By matching 2 3 1.0753 0.95557 9.8138 5 Median 1.0218 0.95711 10.789 2 0 Median 1.1264 0.95557 11.35 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11910000 6294800 5614900 9009400 4688300 4321100 2900300 1606600 1293700 0 0 0 0 0 0 0 0 0 0 0 0 5263 3755 5481 26680;26681;26682;26683;26684 26853;26854 26853 2 DSLTDLYVQHAIPLPQR EQKNIAVETDVRVNKDSLTDLYVQHAIPLP LTDLYVQHAIPLPQRDLPKNRWGKMMEKKR K D S Q R D 1 1 0 2 0 2 0 0 1 1 3 0 0 0 2 1 1 0 1 1 0 0 17 0 1965.032 Q9BVC5;C9J4K0 Q9BVC5 47 63 C2orf49 Ashwin yes no 3 0.011627 22.154 By MS/MS By matching 2 2 0.78822 0.69947 19.622 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82424 0.78583 21.774 2 0 Median 0.7793 0.6443 16.931 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3739900 1875200 1864600 0 0 0 0 0 0 3273800 1655700 1618100 466090 219570 246530 0 0 0 0 0 0 5264 3850 5482 26685;26686;26687;26688 26855;26856 26856 2 DSLVPATPENIQEASK YLNFILFSGLSTTWKDSLVPATPENIQEAS SLVPATPENIQEASKFVMDIQDRGMTNIND K D S S K F 2 0 1 1 0 1 2 0 0 1 1 1 0 0 2 2 1 0 0 1 0 0 16 0 1697.8472 CON__Q0V8M9 CON__Q0V8M9 334 349 yes yes 2 0.067995 32.062 By MS/MS 1 0.38083 0.359 NaN 1 Median 0.38083 0.359 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1935700 1636900 298740 1935700 1636900 298740 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5265 770 5483 26689 26857 26857 1 DSLYKDAMQYASESK KGNNRWKQSVELCKKDSLYKDAMQYASESK DSLYKDAMQYASESKDTELAEELLQWFLQE K D S S K D 2 0 0 2 0 1 1 0 0 0 1 2 1 0 0 3 0 0 2 0 0 0 15 1 1734.7771 A0A087WVQ6;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 1535 1549 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.064766 11.279 By MS/MS 2 0.97142 1.0121 18.592 2 Median 0.97142 1.0121 18.592 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5045600 2742100 2303600 5045600 2742100 2303600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5266 44 5484 26690;26691 26858 26858 1 DSNFAGDLVR RAGEKGVAYTLLTPKDSNFAGDLVRNLEGA LLTPKDSNFAGDLVRNLEGANQHVSKELLD K D S V R N 1 1 1 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 10 0 1092.52 Q86XP3;A0A0A0MSJ0 Q86XP3 606 615 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.0013538 66.27 By MS/MS By MS/MS 1 1 0.84758 0.79141 30.593 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1536 0.98254 NaN 1 0 Median 0.62272 0.63745 NaN 1 0 Median NaN NaN NaN 0 0 Median 11133000 5589900 5542800 0 0 0 0 0 0 0 0 0 1906100 897400 1008700 9226500 4692500 4534000 0 0 0 5267 3302 5485 26692;26693 26859;26860 26859 2 DSNNLCLHFNPR EVAPDAKSFVLNLGKDSNNLCLHFNPRFNA LGKDSNNLCLHFNPRFNAHGDANTIVCNSK K D S P R F 0 1 3 1 1 0 0 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1485.6783 P09382 P09382 38 49 LGALS1 Galectin-1 yes yes 2;3 0.00029955 58.676 By MS/MS By matching 2 1 1.1897 1.0085 7.3222 3 Median NaN NaN NaN 0 0 Median 1.248 1.0573 6.6857 2 0 Median 0.94566 0.95969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7051400 3575700 3475700 0 0 0 6003700 3049300 2954400 1047700 526420 521320 0 0 0 0 0 0 0 0 0 5268 1913 5486 26694;26695;26696 26861;26862;26863 26861 2 DSNPDEIEIDFETLKPTTLR GRVVHIIQSREPSLRDSNPDEIEIDFETLK EIEIDFETLKPTTLRELERYVKSCLQKKQR R D S L R E 0 1 1 3 0 0 3 0 0 2 2 1 0 1 2 1 3 0 0 0 0 0 20 1 2332.1434 Q15059 Q15059 608 627 BRD3 Bromodomain-containing protein 3 yes yes 3 0.0098036 22.118 By matching By MS/MS 1 1 0.66694 0.7457 15.1 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59025 0.67018 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75359 0.82972 NaN 1 0 Median NaN NaN NaN 0 0 Median 8834200 4974300 3860000 0 0 0 0 0 0 4594300 2815200 1779000 0 0 0 4240000 2159100 2080900 0 0 0 5269 2923 5487 26697;26698 26864 26864 1 DSNYHLLMSVQESLER LNHVSYGRLTFKYERDSNYHLLMSVQESLE SNYHLLMSVQESLERKFGKHGGTIPIVPTA R D S E R K 0 1 1 1 0 1 2 0 1 0 3 0 1 0 0 3 0 0 1 1 0 0 16 0 1919.9047 P00367 P00367 461 476 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2;3 0.00012877 64.55 By MS/MS By MS/MS By matching 1 2 1 1.3919 1.2141 19.784 4 Median 1.2547 1.2519 NaN 1 0 Median 1.3919 1.1758 0.21114 2 0 Median NaN NaN NaN 0 0 Median 2.0364 1.7755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23494000 9424000 14070000 2592500 1044600 1547900 20466000 8182100 12284000 0 0 0 435560 197340 238220 0 0 0 0 0 0 5270 1814 5488 26699;26700;26701;26702 26865;26866;26867;26868 26866 4 DSPAFPDSPWR SASKLRIAQVSPGPRDSPAFPDSPWRERVL PGPRDSPAFPDSPWRERVLAPILPDNFSTP R D S W R E 1 1 0 2 0 0 0 0 0 0 0 0 0 1 3 2 0 1 0 0 0 0 11 0 1273.5728 Q9NQS7 Q9NQS7 268 278 INCENP Inner centromere protein yes yes 2 0.030236 31.422 By MS/MS By matching 2 2 0.68553 0.64141 11.094 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66618 0.70231 5.4202 2 0 Median 0.68553 0.58795 4.8981 2 0 Median 4091900 2587600 1504300 0 0 0 0 0 0 0 0 0 0 0 0 3708800 2365200 1343600 383060 222390 160670 5271 4065 5489 26703;26704;26705;26706 26869 26869 1 DSPDLLLLLR VRHLQELVGQETLPRDSPDLLLLLRLLALG ETLPRDSPDLLLLLRLLALGQGAWDMIDSQ R D S L R L 0 1 0 2 0 0 0 0 0 0 5 0 0 0 1 1 0 0 0 0 0 0 10 0 1153.6707 Q8WX92 Q8WX92 334 343 NELFB Negative elongation factor B yes yes 2 0.0049654 51.346 By MS/MS By matching By matching By matching 1 1 1 1 1.0941 0.97705 31.291 4 Median 0.95169 0.94687 NaN 1 0 Median 1.0499 0.90845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7491 1.7726 NaN 1 0 Median 1.1401 1.0082 NaN 1 0 Median 12766000 6184800 6581600 2920100 1455800 1464200 9653900 4647100 5006800 0 0 0 0 0 0 129200 51973 77224 63308 29935 33373 5272 3514 5490 26707;26708;26709;26710 26870 26870 1 DSPFGLSFVR RWDRVKIVCSQPYSKDSPFGLSFVRFHSPP QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ K D S V R F 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 1 0 0 10 0 1123.5662 F5H8D7;P18887;M0QYS5;M0R1U8;M0QZ96;M0R0D2 F5H8D7 108 117 XRCC1 DNA repair protein XRCC1 yes no 2 0.013194 40.352 By matching By matching By MS/MS By matching 3 2 2 3 1.1169 0.98833 20.827 10 Median 1.1697 1.1635 34.822 3 0 Median 1.0885 0.96468 18.803 2 0 Median 0.91521 0.89167 5.632 2 0 Median 1.2522 1.0527 17.555 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28693000 14703000 13990000 1747300 816830 930480 713650 364920 348730 23728000 12337000 11392000 2503500 1184600 1318900 0 0 0 0 0 0 5273 1047 5491 26711;26712;26713;26714;26715;26716;26717;26718;26719;26720 26871 26871 1 DSPLLLQQISAMR PGQAPGSVPGPGLVKDSPLLLQQISAMRLH VKDSPLLLQQISAMRLHISQLQHENSILKG K D S M R L 1 1 0 1 0 2 0 0 0 1 3 0 1 0 1 2 0 0 0 0 0 0 13 0 1470.7864 E7EX90;Q14203;E7EWF7 E7EX90 1067 1079 DCTN1 Dynactin subunit 1 yes no 2 0.00010955 84.658 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0148 0.90345 20.876 4 Median 0.94442 0.90345 1.0413 2 0 Median 1.0621 0.89483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3074 1.3669 NaN 1 0 Median NaN NaN NaN 0 0 Median 20750000 10121000 10629000 13549000 6771700 6777400 5629900 2678600 2951300 0 0 0 0 0 0 1571000 671070 899980 0 0 0 5274 906 5492 26721;26722;26723;26724;26725 26872;26873;26874;26875;26876;26877;26878;26879;26880 26880 9 DSPSVWAAVPGK MADGTCQDAAIVGYKDSPSVWAAVPGKTFV GYKDSPSVWAAVPGKTFVNITPAEVGVLVG K D S G K T 2 0 0 1 0 0 0 1 0 0 0 1 0 0 2 2 0 1 0 2 0 0 12 0 1212.6139 P07737;CON__P02584;I3L3D5 P07737 27 38 PFN1 Profilin-1 yes no 2 3.327E-06 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 4 1 1 2 1 0.85064 0.73713 24.178 13 Median 0.78041 0.714 34.731 4 1 Median 0.8633 0.72473 26.082 4 0 Median 0.78361 0.73713 NaN 1 0 Median 0.89193 0.71267 NaN 1 0 Median 0.85513 0.9603 22.438 2 0 Median 1.0637 0.8745 NaN 1 0 Median 1360300000 738730000 621540000 492640000 275310000 217330000 723220000 386080000 337140000 106410000 58588000 47823000 21761000 10801000 10960000 7394200 3454200 3940000 8832300 4490000 4342300 5275 1889 5493 26726;26727;26728;26729;26730;26731;26732;26733;26734;26735;26736;26737;26738 26881;26882;26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898;26899;26900 26882 20 DSQDAGGFGPEDR QALHSLELHYQAFLRDSQDAGGFGPEDRLM LRDSQDAGGFGPEDRLMAEREYGSCSHHYQ R D S D R L 1 1 0 3 0 1 1 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 0 1349.5484 Q15149;H0YDN1 Q15149 1076 1088 PLEC Plectin yes no 2 6.603E-07 104.82 By MS/MS 1 1.1702 0.99156 NaN 1 Median NaN NaN NaN 0 0 Median 1.1702 0.99156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046500 1823000 2223500 0 0 0 4046500 1823000 2223500 0 0 0 0 0 0 0 0 0 0 0 0 5276 2933 5494 26739 26901;26902 26902 2 DSQDASAEQSDHDDEVASLASASGGFGTK SLAFHRPPYHLLQQRDSQDASAEQSDHDDE EVASLASASGGFGTKVPAPRLPAKDWKTKG R D S T K V 5 0 0 5 0 2 2 3 1 0 1 1 0 1 0 6 1 0 0 1 0 0 29 0 2881.2122 Q6P2E9 Q6P2E9 870 898 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 1.268E-20 63.491 By matching By MS/MS 1 1 0.7424 0.75679 17.54 2 Median 0.8921 0.85672 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61781 0.66852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8554800 4607800 3947000 3150300 1459200 1691100 0 0 0 5404500 3148600 2255900 0 0 0 0 0 0 0 0 0 5277 3155 5495 26740;26741 26903 26903 1 DSQEEEKTEALTSAK MLLDTWDQVFVWVGKDSQEEEKTEALTSAK DSQEEEKTEALTSAKRYIETDPANRDRRTP K D S A K R 2 0 0 1 0 1 4 0 0 0 1 2 0 0 0 2 2 0 0 0 0 0 15 1 1664.7741 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14 A0A0A0MS51 680 694 GSN Gelsolin yes no 3 0.0024753 32.815 By MS/MS By matching By matching 1 1 1 0.84087 0.86678 33.249 3 Median 0.84087 0.86678 NaN 1 0 Median 1.3368 1.2922 NaN 1 0 Median 0.58353 0.66779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8131300 4413600 3717700 4987900 2633000 2354900 1169500 433710 735770 1973900 1346900 627020 0 0 0 0 0 0 0 0 0 + 5278 176 5496 26742;26743;26744 26904;26905 26905 2 DSQGENMFLR PREALQYFYFLRDEKDSQGENMFLRCVSEL LRDEKDSQGENMFLRCVSELVIESREFDMI K D S L R C 0 1 1 1 0 1 1 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 10 0 1195.5292 Q8N1F7;H3BVG0 Q8N1F7 559 568 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00045299 91.318 By matching By MS/MS By matching 1 1 1 0.97448 1.0372 16.318 3 Median NaN NaN NaN 0 0 Median 0.93081 0.84657 NaN 1 0 Median 0.97448 1.0372 NaN 1 0 Median 1.3617 1.1691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8731000 3997200 4733800 0 0 0 773970 277220 496750 7051900 3334600 3717300 905080 385340 519740 0 0 0 0 0 0 5279 3356 5497 26745;26746;26747 26906;26907 26907 2 DSQLQFEAISDEEK RFSILPKDKIQDFLKDSQLQFEAISDEEKT KDSQLQFEAISDEEKTLREQEIVASSPSLS K D S E K T 1 0 0 2 0 2 3 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 14 0 1637.7421 P49643 P49643 146 159 PRIM2 DNA primase large subunit yes yes 2 4.5699E-06 94.767 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.99834 0.91117 13.028 4 Median 0.89909 0.86305 NaN 1 0 Median 1.23 1.1007 NaN 1 0 Median 0.81488 0.82016 NaN 1 0 Median 1.1086 0.96196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10134000 5427200 4706800 4231500 2234400 1997100 398960 175140 223820 4724500 2645100 2079500 778990 372540 406450 0 0 0 0 0 0 5280 2389 5498 26748;26749;26750;26751 26908;26909;26910 26909 3 DSQLYAVDYETLTRPFSGR ARRVRALREQLNRPRDSQLYAVDYETLTRP YAVDYETLTRPFSGRRLPVRAWADVRRESR R D S G R R 1 2 0 2 0 1 1 1 0 0 2 0 0 1 1 2 2 0 2 1 0 0 19 1 2217.0702 C9JJ19;P82930 C9JJ19 30 48 MRPS34 28S ribosomal protein S34, mitochondrial yes no 3 0.0091823 32.387 By MS/MS By MS/MS 1 1 1.1015 1.0495 0.85115 2 Median 0.98771 1.0558 NaN 1 1 Median 1.2283 1.0432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5721500 2648600 3072900 4296600 1981200 2315300 1425000 667370 757580 0 0 0 0 0 0 0 0 0 0 0 0 5281 702 5499 26752;26753 26911;26912 26911 2 DSQMALVESLEYVR LESLFILPGMEVEQRDSQMALVESLEYVRG RDSQMALVESLEYVRGEISKAMADFTTWKT R D S V R G 1 1 0 1 0 1 2 0 0 0 2 0 1 0 0 2 0 0 1 2 0 0 14 0 1638.7923 Q9NU22 Q9NU22 4454 4467 MDN1 Midasin yes yes 2 1.1128E-05 93.058 By MS/MS 1 1.0842 1.1794 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0842 1.1794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3694400 1766500 1927900 0 0 0 0 0 0 3694400 1766500 1927900 0 0 0 0 0 0 0 0 0 5282 4112 5500 26754 26913;26914 26913 1878 2 DSQTQAILTK KAESTPEIAEQRGERDSQTQAILTKLKCAA QRGERDSQTQAILTKLKCAAGLAELAARKY R D S T K L 1 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1103.5823 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070 C9JFE4 219 228 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.035656 32.415 By matching By MS/MS 1 1 1.125 1.0271 29.011 2 Median 0.8587 0.83657 NaN 1 0 Median 1.474 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4407400 2178300 2229100 1639100 895890 743230 2768300 1282400 1485900 0 0 0 0 0 0 0 0 0 0 0 0 5283 695 5501 26755;26756 26915 26915 1 DSQVVQVVLDGLK QQNVIPPFCNLLSVKDSQVVQVVLDGLKNI VKDSQVVQVVLDGLKNILIMAGDEASTIAE K D S L K N 0 0 0 2 0 2 0 1 0 0 2 1 0 0 0 1 0 0 0 4 0 0 13 0 1398.7718 O00505;H0Y4S9 O00505 424 436 KPNA3 Importin subunit alpha-4 yes no 2 1.2439E-05 96.015 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1.1202 1.0308 51.509 7 Plateau 1.1388 1.1216 NaN 1 0 Median 1.213 1.0308 NaN 1 0 Median 1.062 1.0819 15.128 2 0 Median NaN NaN NaN 0 0 Median 1.0392 1.0813 NaN 1 0 Median 0.54948 0.46136 73.075 2 0 Median 15228000 7720500 7508000 852280 455680 396600 6520600 2916500 3604100 6932900 3848800 3084100 0 0 0 316040 143170 172870 606740 356380 250360 5284 1469 5502 26757;26758;26759;26760;26761;26762;26763 26916;26917;26918 26916 3 DSSAAQPGVAFSVDNTIK KEPKTKGKDAKDGKKDSSAAQPGVAFSVDN AAQPGVAFSVDNTIKRPNPAPGTRKKSSNA K D S I K R 3 0 1 2 0 1 0 1 0 1 0 1 0 1 1 3 1 0 0 2 0 0 18 0 1805.8796 Q9UQ13 Q9UQ13 56 73 SHOC2 Leucine-rich repeat protein SHOC-2 yes yes 2 5.7949E-06 61.375 By MS/MS 1 0.82659 0.83294 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82659 0.83294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589400 1916700 2672700 0 0 0 0 0 0 4589400 1916700 2672700 0 0 0 0 0 0 0 0 0 5285 4358 5503 26764 26919 26919 1 DSSGNLHGYVAEGGAK GRFQAPGARSSRPIRDSSGNLHGYVAEGGA SSGNLHGYVAEGGAKDIRGAVEAAHQAFPG R D S A K D 2 0 1 1 0 0 1 4 1 0 1 1 0 0 0 2 0 0 1 1 0 0 16 0 1560.7168 Q8IZ83;F5H4B6;M0QY06 Q8IZ83 549 564 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 3 0.0070696 25.054 By MS/MS By matching By matching 1 1 1 0.9208 0.90346 55.968 3 Median 1.0116 0.98923 NaN 1 0 Median 0.3687 0.35974 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9208 0.90346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4284900 2572600 1712300 2559900 1449000 1111000 1050900 797010 253930 0 0 0 674070 326680 347390 0 0 0 0 0 0 5286 3348 5504 26765;26766;26767 26920;26921 26920 2 DSSGQHVDVSPTSQR GEFDPGQDTYQHPPKDSSGQHVDVSPTSQR DSSGQHVDVSPTSQRLQLLEPFDKWDGKDL K D S Q R L 0 1 0 2 0 2 0 1 1 0 0 0 0 0 1 4 1 0 0 2 0 0 15 0 1598.7285 A2A274;Q99798 A2A274 575 589 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 6.7302E-05 71.344 By matching By MS/MS 1 2 0.95419 0.88856 18.62 2 Median 0.77905 0.77894 NaN 1 0 Median 1.1687 1.0136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3039600 1446000 1593500 443920 238150 205760 2595700 1207900 1387800 0 0 0 0 0 0 0 0 0 0 0 0 5287 495 5505 26768;26769;26770 26922;26923;26924 26922 3 DSSQILSASFDQTIR ERAHSKGVTCLSFSKDSSQILSASFDQTIR DSSQILSASFDQTIRIHGLKSGKTLKEFRG K D S I R I 1 1 0 2 0 2 0 0 0 2 1 0 0 1 0 4 1 0 0 0 0 0 15 0 1666.8162 Q2TAY7 Q2TAY7 318 332 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 1.2138E-07 130.56 By MS/MS By matching By MS/MS 1 1 2 1.0763 0.99967 15.821 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2485 1.2542 NaN 1 0 Median 1.2341 1.0602 NaN 1 0 Median 0.91404 0.90646 5.5227 2 0 Median NaN NaN NaN 0 0 Median 21380000 10384000 10996000 0 0 0 0 0 0 10263000 4630500 5632600 2312600 1048700 1263900 8803900 4704500 4099400 0 0 0 5288 3005 5506 26771;26772;26773;26774 26925;26926;26927 26925 3 DSTEYFIVFEPR AEIMSLVLAESSPGRDSTEYFIVFEPRLPL PGRDSTEYFIVFEPRLPLLSRTLEPYILPF R D S P R L 0 1 0 1 0 0 2 0 0 1 0 0 0 2 1 1 1 0 1 1 0 0 12 0 1501.7089 A6NHR9;J3KTL8 A6NHR9 1585 1596 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00059533 71.889 By MS/MS By matching 1 1 0.90314 0.8887 3.7847 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78244 0.86523 NaN 1 0 Median 1.0425 0.9128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4258900 2386700 1872200 0 0 0 0 0 0 4000700 2251600 1749100 258170 135120 123060 0 0 0 0 0 0 5289 518 5507 26775;26776 26928;26929 26929 2 DSTGHVGFIFK TIRDRPFERTITMHKDSTGHVGFIFKNGKI TMHKDSTGHVGFIFKNGKITSIVKDSSAAR K D S F K N 0 0 0 1 0 0 0 2 1 1 0 1 0 2 0 1 1 0 0 1 0 0 11 0 1206.6033 G5EA09;B4DHN5;E9PBU7;O00560 O00560 204 214 SDCBP Syntenin-1 no no 2;3 0.008703 40.002 By MS/MS By matching By MS/MS 1 1 2 1.6862 1.4266 26.611 4 Median 1.2563 1.2147 NaN 1 0 Median 1.8565 1.576 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9862 1.6828 37.443 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7171200 2647300 4523900 3734200 1447600 2286600 572300 200910 371390 0 0 0 2864600 998760 1865900 0 0 0 0 0 0 5290 1132;1470 5508 26777;26778;26779;26780 26930;26931 26931 2 DSTLIMQLLR DAIAELDTLSEESYKDSTLIMQLLRDNLTL EESYKDSTLIMQLLRDNLTLWTSDMQGDGE K D S L R D 0 1 0 1 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1188.6536 P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80;P27348;P31946;P31947;P61981;P62258;K7EM20;Q04917 P62258 216 225 YWHAZ;YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 2 0.00040999 116.73 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 7 9 3 3 6 1.1595 1.0501 23.578 32 Median 1.1644 1.0708 2.6721 4 0 Linear 1.2283 1.0467 4.0005 7 0 Median 1.0933 1.0631 39.439 9 0 Median 1.2602 1.0501 2.0096 3 0 Plateau 1.0667 1.0534 18.799 3 0 Median 1.3062 1.0394 13.95 6 0 Median 465970000 204030000 261930000 172480000 78708000 93768000 47523000 20405000 27118000 51048000 23471000 27577000 4245200 1853900 2391300 3378700 1395800 1982900 187290000 78198000 109100000 5291 2576;2618;2210;2152;2714;2566;2211 5509;5510 26781;26782;26783;26784;26785;26786;26787;26788;26789;26790;26791;26792;26793;26794;26795;26796;26797;26798;26799;26800;26801;26802;26803;26804;26805;26806;26807;26808;26809;26810;26811;26812;26813 26932;26933;26934;26935;26936;26937;26938;26939;26940;26941;26942;26943 26934 913 12 DSTQTPAVTPQSQPATTDSTVTVQK GDGVAVLRFFNEVFKDSTQTPAVTPQSQPA QSQPATTDSTVTVQKLNFELTDALKTGITA K D S Q K L 2 0 0 2 0 4 0 0 0 0 0 1 0 0 3 3 7 0 0 3 0 0 25 0 2587.2613 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 390 414 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 3 4.459E-05 30.337 By MS/MS By MS/MS 1 1 0.86527 0.78396 36.268 2 Median 0.63649 0.60662 NaN 1 0 Median 1.1763 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9169100 5395700 3773400 6367000 4238200 2128800 2802100 1157400 1644600 0 0 0 0 0 0 0 0 0 0 0 0 5292 317 5511 26814;26815 26944;26945;26946 26944 3 DSVVAGFQWATK LTDITKGVQYLNEIKDSVVAGFQWATKEGA EIKDSVVAGFQWATKEGALCEENMRGVRFD K D S T K E 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 1 1 1 0 2 0 0 12 0 1307.651 P13639 P13639 677 688 EEF2 Elongation factor 2 yes yes 2 0.00014004 88.681 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1561 1.1037 44.402 5 Median 1.1769 1.1376 4.2747 2 1 Median 0.94796 0.82829 NaN 1 0 Median 2.2518 2.4728 NaN 1 0 Median 0.97457 0.84491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23446000 10896000 12550000 8389200 3999300 4389900 8555200 4343000 4212200 3368500 1001900 2366600 3133100 1552100 1581000 0 0 0 0 0 0 5293 1992 5512 26816;26817;26818;26819;26820 26947;26948;26949;26950;26951 26949 5 DSVVLSLLK VSTGEFTDLKQQLERDSVVLSLLKQLQEFS KQQLERDSVVLSLLKQLQEFSTAIEEYNCA R D S L K Q 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 2 0 0 0 2 0 0 9 0 972.58555 O43264 O43264 102 110 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.044997 32.355 By MS/MS By matching 1 1 1.2575 1.192 7.3383 2 Median 1.2436 1.2555 NaN 1 0 Median 1.2716 1.1317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2566100 1108200 1457900 1165000 502860 662160 1401100 605350 795730 0 0 0 0 0 0 0 0 0 0 0 0 5294 1562 5513 26821;26822 26952 26952 1 DSVWGSGGGQQSVNHLVK KATVLLSMSKGGKRKDSVWGSGGGQQSVNH WGSGGGQQSVNHLVKEIDMLLKEYLLSGDI K D S V K E 0 0 1 1 0 2 0 4 1 0 1 1 0 0 0 3 0 1 0 3 0 0 18 0 1853.902 Q53EL6 Q53EL6 312 329 PDCD4 Programmed cell death protein 4 yes yes 2;3 0.00050648 53.967 By MS/MS By matching By matching By matching 3 1 1 1 0.89694 0.82067 30.696 5 Median 0.8284 0.76774 12.03 2 1 Median 0.9652 0.82067 NaN 1 0 Median 0.81711 0.8171 NaN 1 0 Median 1.7938 1.5483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50174000 25855000 24319000 37629000 19820000 17809000 5910800 2636900 3273900 5524400 3011300 2513100 1109800 386560 723240 0 0 0 0 0 0 5295 3026 5514 26823;26824;26825;26826;26827;26828 26953;26954;26955;26956 26955 4 DSYDSYATHNE QSGGYSDRSSGGSYRDSYDSYATHNE____ GSYRDSYDSYATHNE_______________ R D S N E - 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 2 1 0 2 0 0 0 11 0 1300.4844 Q14011 Q14011 162 172 CIRBP Cold-inducible RNA-binding protein yes yes 2 0.00075693 87.913 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8245600 0 0 0 0 0 1690500 0 0 5719000 0 0 836150 0 0 0 0 0 0 0 0 5296 2851 5515 26829;26830;26831 26957;26958;26959 26957 3 DSYESYGNSR RDRDYSDHPSGGSYRDSYESYGNSRSAPPT GGSYRDSYESYGNSRSAPPTRGPPPSYGGS R D S S R S 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 3 0 0 2 0 0 0 10 0 1176.4683 P38159;H3BUY5;Q96E39 P38159 283 292 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.0015287 64.711 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.1607 1.0753 14.37 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0024 1.0085 NaN 1 0 Median 1.3692 1.1914 NaN 1 0 Median 0.9146 0.94182 9.3331 2 0 Median 1.4298 1.2286 9.763 2 0 Median 28796000 13983000 14814000 0 0 0 0 0 0 1756900 817350 939540 2317600 940060 1377500 16881000 8769600 8111200 7841000 3455500 4385400 5297 2273;3632 5516 26832;26833;26834;26835;26836;26837 26960;26961;26962;26963;26964;26965;26966;26967;26968;26969 26968 10 DSYGGPPR SSSGMGGRAPVSRGRDSYGGPPRREPLPSR APVSRGRDSYGGPPRREPLPSRRDVYLSPR R D S P R R 0 1 0 1 0 0 0 2 0 0 0 0 0 0 2 1 0 0 1 0 0 0 8 0 847.38243 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 188 195 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.013642 52.636 By matching By MS/MS By MS/MS 1 1 2 0.9743 0.85695 17.125 4 Median 1.0474 1.052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72357 0.72584 NaN 1 0 Median 0.98761 0.85695 13.683 2 0 Median 7072000 3792700 3279300 133280 60830 72450 0 0 0 0 0 0 0 0 0 5026300 2836700 2189600 1912400 895150 1017200 5298 2273;3632 5517 26838;26839;26840;26841 26970;26971;26972;26973 26972 4 DSYGGPPRREPLPSR SSSGMGGRAPVSRGRDSYGGPPRREPLPSR DSYGGPPRREPLPSRRDVYLSPRDDGYSTK R D S S R R 0 3 0 1 0 0 1 2 0 0 1 0 0 0 4 2 0 0 1 0 0 0 15 2 1682.8489 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 188 202 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3;4 0.0020448 33.796 By MS/MS By MS/MS 3 1 0.59509 0.76982 18.942 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51321 0.67619 15.041 3 0 Median 0.92899 0.98298 NaN 1 0 Median 39257000 24210000 15047000 0 0 0 0 0 0 0 0 0 0 0 0 37010000 22932000 14078000 2247500 1278500 968980 5299 2273;3632 5518 26842;26843;26844;26845 26974;26975;26976;26977;26978 26978 5 DSYIEVLLPLGSEPELR FLAKSQDGLPPRRMKDSYIEVLLPLGSEPE YIEVLLPLGSEPELREKYLTVQNTVRFGRI K D S L R E 0 1 0 1 0 0 3 1 0 1 4 0 0 0 2 2 0 0 1 1 0 0 17 0 1929.0095 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 85 101 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 7.3652E-40 162.6 By MS/MS By MS/MS 3 1 0.79164 0.73414 53.397 4 Median NaN NaN NaN 0 0 Median 1.0376 0.88545 65.092 3 1 Median 0.60402 0.60869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9689100 5191800 4497300 0 0 0 7493400 4198900 3294600 2195600 992910 1202700 0 0 0 0 0 0 0 0 0 5300 4400 5519 26846;26847;26848;26849 26979;26980;26981;26982 26981 4 DSYLILETLPTEYDSR DAEKLKPGDLVGVNKDSYLILETLPTEYDS SYLILETLPTEYDSRVKAMEVDERPTEQYS K D S S R V 0 1 0 2 0 0 2 0 0 1 3 0 0 0 1 2 2 0 2 0 0 0 16 0 1913.9258 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PN50;E9PLG2 R4GNH3 140 155 PSMC3 26S protease regulatory subunit 6A yes no 2 6.063E-05 78.096 By MS/MS By MS/MS 1 1 1.0971 1.0218 28.032 2 Median NaN NaN NaN 0 0 Median 0.97262 0.8381 NaN 1 0 Median 1.2375 1.2459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5218400 2630200 2588100 0 0 0 2195900 1129900 1066100 3022400 1500400 1522100 0 0 0 0 0 0 0 0 0 5301 2050 5520 26850;26851 26983;26984;26985 26983 3 DSYVGDEAQSK GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL MGQKDSYVGDEAQSKRGILTLKYPIEHGIV K D S S K R 1 0 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 11 0 1197.515 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76 P63261 51 61 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2 9.6844E-07 166.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 1 3 3 1.0784 0.98068 20.833 17 Median 1.0595 1.0065 17.609 4 0 Median 1.2254 1.0448 29.686 5 0 Median 0.83691 0.86346 NaN 1 0 Median 1.1878 1.0106 NaN 1 0 Median 0.89699 0.89901 7.953 3 0 Median 1.1505 0.94618 12.625 3 0 Plateau 341420000 157150000 184270000 54611000 25039000 29572000 210460000 93423000 117040000 35910000 18656000 17254000 8104700 3684100 4420600 25629000 13301000 12328000 6699800 3044200 3655600 5302 2625;2630;2595 5521 26852;26853;26854;26855;26856;26857;26858;26859;26860;26861;26862;26863;26864;26865;26866;26867;26868 26986;26987;26988;26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000;27001;27002;27003;27004;27005;27006;27007;27008;27009 26999 24 DSYVGDEAQSKR GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL GQKDSYVGDEAQSKRGILTLKYPIEHGIVT K D S K R G 1 1 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 12 1 1353.6161 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76 P63261 51 62 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2;3 9.9523E-07 105.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 2 2 5 3 1.0468 1.0343 21.062 26 Median 1.046 1.0639 15.187 7 0 Median 1.0956 0.99978 20.582 7 0 Median 0.8962 1.018 0.50457 2 0 Median 1.2171 1.0615 0.20989 2 0 Median 0.92131 1.0064 18.035 5 0 Median 1.2034 1.0959 48.54 3 0 Median 143170000 69860000 73306000 47769000 22106000 25663000 36047000 16153000 19894000 8812200 4541700 4270500 6811400 3096100 3715200 36887000 19268000 17619000 6839200 4695900 2143400 5303 2625;2630;2595 5522 26869;26870;26871;26872;26873;26874;26875;26876;26877;26878;26879;26880;26881;26882;26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894 27010;27011;27012;27013;27014;27015;27016;27017;27018;27019;27020;27021;27022;27023;27024;27025;27026;27027;27028;27029;27030;27031;27032;27033;27034 27027 24 DTAASGYGTQNIR NCTAGAVYTYHEKKKDTAASGYGTQNIRLS KKDTAASGYGTQNIRLSRDAVKDFDCCCLS K D T I R L 2 1 1 1 0 1 0 2 0 1 0 0 0 0 0 1 2 0 1 0 0 0 13 0 1352.6321 Q9Y314;M0R3B2;A0A075B6F9;M0R1K2;M0QX85;M0R1T7 Q9Y314 22 34 NOSIP Nitric oxide synthase-interacting protein yes no 2 3.8838E-07 109.42 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2782 1.0558 28.208 4 Linear 0.90368 0.84485 NaN 1 1 Median 0.80752 0.67283 NaN 1 1 Median 0.50187 0.49646 NaN 1 1 Median 1.1253 0.93879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29911000 17445000 12466000 10008000 6686200 3322200 5306500 3217800 2088700 4208200 2860300 1347900 10387000 4680400 5707100 0 0 0 0 0 0 5304 4401 5523 26895;26896;26897;26898 27035;27036;27037;27038;27039 27038 5 DTAAWTVGR PTLIELMKDPSVVVRDTAAWTVGRICELLP PSVVVRDTAAWTVGRICELLPEAAINDVYL R D T G R I 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 1 0 1 0 0 9 0 975.47739 Q14974;J3KTM9;J3QKQ5 Q14974 426 434 KPNB1 Importin subunit beta-1 yes no 2 0.00037364 134.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 2 1.2226 1.0469 8.8287 7 Median 1.0986 1.0394 NaN 1 0 Median 1.3614 1.1775 NaN 1 0 Median 0.98851 1.0469 NaN 1 0 Median 1.4111 1.216 NaN 1 1 Median 0.89494 0.94805 NaN 1 0 Median 1.2357 1.0351 5.5867 2 0 Median 70527000 31575000 38953000 12785000 6111700 6672900 27624000 11740000 15885000 20153000 9472600 10680000 3104500 1287300 1817200 2703500 1442700 1260800 4157600 1520700 2636800 5305 2904 5524 26899;26900;26901;26902;26903;26904;26905;26906 27040;27041;27042;27043;27044;27045;27046;27047 27043 8 DTAEGVSQELISAGLVDGR KKELNDIRFEFTPGRDTAEGVSQELISAGL GVSQELISAGLVDGRDLVIVAANLQKIVEE R D T G R D 2 1 0 2 0 1 2 3 0 1 2 0 0 0 0 2 1 0 0 2 0 0 19 0 1915.9487 O95747 O95747 459 477 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 2 0.0095074 40.577 By MS/MS By MS/MS 1 1 1.1676 1.2038 17.917 2 Median 1.0467 1.0605 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3024 1.3664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4358800 1912900 2445900 1657700 740980 916730 0 0 0 2701100 1171900 1529200 0 0 0 0 0 0 0 0 0 5306 1789 5525 26907;26908 27048;27049 27048 2 DTAIYQKDEALHVKNEAVK QKDKTLEHKEVVEPKDTAIYQKDEALHVKN YQKDEALHVKNEAVKQQDKALEQKGRDLEQ K D T V K Q 3 0 1 2 0 1 2 0 1 1 1 3 0 0 0 0 1 0 1 2 0 0 19 2 2171.1222 E9PGC8;P78559 E9PGC8 1622 1640 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 4 0.026234 14.77 By MS/MS 1 1.1242 1.3279 NaN 1 Median 1.1242 1.3279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3526100 1692300 1833800 3526100 1692300 1833800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5307 923 5526 26909 27050 27050 1 DTALETALNAK FQRQLRQEVVVCMRRDTALETALNAKAYKR CMRRDTALETALNAKAYKRSKRQSLREARI R D T A K A 3 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1145.5928 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8Y4C5;A0A2R8YGP5 P51532 427 437 SMARCA4 Transcription activator BRG1 yes no 2 0.00011363 128.12 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.24 1.1838 11.858 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0777 1.1838 NaN 1 0 Median 1.3621 1.2399 14.387 2 0 Median 1.3135 1.379 NaN 1 0 Median 1.2395 1.0623 NaN 1 0 Median 55227000 26283000 28945000 0 0 0 0 0 0 46160000 22500000 23659000 3641900 1431900 2210000 4093600 1692800 2400800 1332400 657850 674510 5308 366 5527 26910;26911;26912;26913;26914 27051;27052;27053;27054;27055 27051 5 DTALTIAADK DKGADVNAPPVPSSRDTALTIAADKGHYKF VPSSRDTALTIAADKGHYKFCELLIGRGAH R D T D K G 3 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 10 0 1017.5342 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1205 1214 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.014334 56.013 By MS/MS 1 1.1623 1.0256 NaN 1 Median NaN NaN NaN 0 0 Median 1.1623 1.0256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1861100 930120 931010 0 0 0 1861100 930120 931010 0 0 0 0 0 0 0 0 0 0 0 0 5309 1197;3329 5528 26915 27056 27056 1 DTALTIAADKGHYK DKGADVNAPPVPSSRDTALTIAADKGHYKF RDTALTIAADKGHYKFCELLIGRGAHIDVR R D T Y K F 3 0 0 2 0 0 0 1 1 1 1 2 0 0 0 0 2 0 1 0 0 0 14 1 1502.7729 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1205 1218 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 3 0.002905 46.964 By MS/MS 1 1.5902 1.5474 NaN 1 Median 1.5902 1.5474 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8159400 2566200 5593100 8159400 2566200 5593100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5310 1197;3329 5529 26916 27057 27057 1 DTAYPETNDAIPMISK PGEVTFLPLNKLDVRDTAYPETNDAIPMIS TAYPETNDAIPMISKLRYNPRFDKAFKHVF R D T S K L 2 0 1 2 0 0 1 0 0 2 0 1 1 0 2 1 2 0 1 0 0 0 16 0 1764.824 Q9UQE7 Q9UQE7 597 612 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.9413E-05 82.543 By MS/MS By matching By MS/MS By matching 2 2 3 2 0.72493 0.69998 22.803 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72577 0.77839 0.99708 2 0 Median 0.90158 0.75561 10.815 2 0 Median 0.59953 0.61487 27.407 3 0 Median 0.8274 0.70078 24.24 2 0 Median 56559000 33333000 23226000 0 0 0 0 0 0 25878000 14653000 11225000 2191100 1048900 1142200 27109000 16912000 10197000 1380800 719150 661630 5311 4362 5530;5531 26917;26918;26919;26920;26921;26922;26923;26924;26925 27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068 27065 1939 11 DTDFKLNELR DNPQTHYYAVAVVKKDTDFKLNELRGKKSC AVVKKDTDFKLNELRGKKSCHTGLGRSAGW K D T L R G 0 1 1 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 10 1 1249.6303 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 122 131 yes no 2;3 0.00061811 87.639 By MS/MS 2 0.090165 0.092606 NaN 1 Median 0.090165 0.092606 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14752000 13610000 1141400 14752000 13610000 1141400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5312 769 5532 26926;26927 27069;27070 27070 2 DTDGGPKEEESPV KPNEVTKAAESPDQKDTDGGPKEEESPV__ QKDTDGGPKEEESPV_______________ K D T P V - 0 0 0 2 0 0 3 2 0 0 0 1 0 0 2 1 1 0 0 1 0 0 13 1 1358.5838 P53985 P53985 488 500 SLC16A1 Monocarboxylate transporter 1 yes yes 2 9.0048E-05 94.692 By MS/MS 1 0.85175 0.74298 NaN 1 Median NaN NaN NaN 0 0 Median 0.85175 0.74298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4912200 2783000 2129200 0 0 0 4912200 2783000 2129200 0 0 0 0 0 0 0 0 0 0 0 0 5313 2476 5533 26928 27071 27071 1 DTDIQGFLK SLSAATTFEPLEPVKDTDIQGFLKNEKDNA PLEPVKDTDIQGFLKNEKDNALLSAIEESR K D T L K N 0 0 0 2 0 1 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1035.5237 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 95 103 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00056678 113.7 By MS/MS By matching 1 1 1.2494 1.2241 1.0408 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1068 1.2151 NaN 1 0 Median 1.4104 1.2332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3801900 1869200 1932700 0 0 0 0 0 0 3327200 1671900 1655200 474770 197320 277450 0 0 0 0 0 0 5314 3356 5534 26929;26930 27072;27073 27073 2 DTDPDSKPFSLQETYEAK YELYRRCKLEEMGFKDTDPDSKPFSLQETY PDSKPFSLQETYEAKRNEFLGELQKKEEEM K D T A K R 1 0 0 3 0 1 2 0 0 0 1 2 0 1 2 2 2 0 1 0 0 0 18 1 2069.9429 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141 D6RGI3 309 326 SEPT11;SEPT6 Septin-11;Septin-6 no no 2;3 1.0316E-06 79.805 By MS/MS By MS/MS 3 3 0.77403 0.78707 20.303 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7004 0.73335 16.68 3 0 Median 0.9888 0.96576 8.5103 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107800000 58361000 49444000 0 0 0 0 0 0 85891000 47618000 38272000 21914000 10743000 11171000 0 0 0 0 0 0 5315 822;573 5535 26931;26932;26933;26934;26935;26936 27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084 27077 11 DTDSEEEIREAFR IDFPEFLTMMARKMKDTDSEEEIREAFRVF MKDTDSEEEIREAFRVFDKDGNGYISAAEL K D T F R V 1 2 0 2 0 0 4 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 13 1 1595.7063 P0DP25;P0DP24;P0DP23;A0A590UK56;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 79 91 CALM2;CALM1 yes no 3 0.0054842 32.439 By matching By matching By MS/MS 1 1 1 0.96185 1.081 19.488 3 Median NaN NaN NaN 0 0 Median 1.4098 1.2898 NaN 1 0 Median 0.80474 0.87393 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96185 1.081 NaN 1 0 Median NaN NaN NaN 0 0 Median 5417700 2912200 2505500 0 0 0 147480 43120 104360 1945000 1132800 812240 0 0 0 3325200 1736300 1588900 0 0 0 5316 1931 5536 26937;26938;26939 27085 27085 1 DTDSINLYK VVENDQGEVVREFMKDTDSINLYKNMRETL VREFMKDTDSINLYKNMRETLVYLTHLDYV K D T Y K N 0 0 1 2 0 0 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1067.5135 O14980 O14980 447 455 XPO1 Exportin-1 yes yes 2 0.0017633 77.923 By MS/MS By matching 1 1 1.1178 1.0114 5.5086 2 Median 1.088 1.0515 NaN 1 0 Median 1.1485 0.97274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23395000 8617600 14778000 13808000 5865600 7942200 9587300 2752000 6835300 0 0 0 0 0 0 0 0 0 0 0 0 5317 1510 5537 26940;26941 27086;27087 27087 2 DTDSLQSQIEDVR ADLDDELDGMGAIGRDTDSLQSQIEDVRLF GRDTDSLQSQIEDVRLFLNKIHVLKLDIEA R D T V R L 0 1 0 3 0 2 1 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 13 0 1504.7005 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5151 5163 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 9.555E-16 190.86 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.9682 0.99687 29.612 4 Median 0.91162 0.88817 NaN 1 0 Median 0.84597 0.71834 NaN 1 0 Median 1.0283 1.1189 NaN 1 0 Median 1.4058 1.4282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24256000 12581000 11675000 16695000 8618200 8076900 3694700 2093600 1601100 3671900 1765700 1906300 193910 103420 90489 0 0 0 0 0 0 5318 1220 5538 26942;26943;26944;26945 27088;27089;27090;27091;27092;27093 27089 6 DTELAATMVELGK IEKVDDLLESYMGIRDTELAATMVELGKDK IRDTELAATMVELGKDKRNPDELAEALDER R D T G K D 2 0 0 1 0 0 2 1 0 0 2 1 1 0 0 0 2 0 0 1 0 0 13 0 1376.6857 O14908;K7EM11 O14908 280 292 GIPC1 PDZ domain-containing protein GIPC1 yes no 2 0.022748 38.086 By MS/MS By MS/MS 1 1 1.1143 1.0132 3.381 2 Median NaN NaN NaN 0 0 Median 1.1492 0.98927 NaN 1 0 Median 1.0805 1.0377 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3901500 1760900 2140600 0 0 0 1755700 836420 919240 2145800 924450 1221300 0 0 0 0 0 0 0 0 0 5319 1502 5539 26946;26947 27094;27095;27096 27096 3 DTEMLATGAQDGK FMMMDDAVLCMCFSRDTEMLATGAQDGKIK SRDTEMLATGAQDGKIKVWKIQSGQCLRRF R D T G K I 2 0 0 2 0 1 1 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 13 0 1335.5976 Q2TAY7 Q2TAY7 275 287 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 1.0083E-06 141.95 By MS/MS By MS/MS 2 1 1.3745 1.3408 16.654 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1649 1.1787 21.071 2 0 Median 1.5625 1.3408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8850600 3746300 5104200 0 0 0 0 0 0 5288800 2463900 2824800 3561800 1282400 2279400 0 0 0 0 0 0 5320 3005 5540 26948;26949;26950 27097;27098;27099;27100;27101 27098 5 DTEQVDNWMSK RQQYEQCMDLQLFYRDTEQVDNWMSKQEAF LFYRDTEQVDNWMSKQEAFLLNEDLGDSLD R D T S K Q 0 0 1 2 0 1 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 0 11 0 1351.5714 A0A0D9SF54;Q13813 Q13813 475 485 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00013559 88.681 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 3 1 1 1.1798 1.1391 25.276 9 Median 1.8485 1.7774 NaN 1 0 Median 1.5933 1.3949 14.609 2 1 Median 1.0152 1.1175 NaN 1 0 Median 1.0274 1.0258 14.112 3 0 Plateau 1.2221 1.281 NaN 1 0 Median 0.98633 0.85366 NaN 1 0 Median 51307000 23692000 27615000 4458300 1589700 2868600 11054000 4454100 6600100 25117000 12761000 12356000 5297100 2427600 2869500 5134300 2323400 2810900 246020 136020 110010 5321 264;2838 5541 26951;26952;26953;26954;26955;26956;26957;26958;26959 27102;27103;27104;27105;27106;27107;27108;27109 27103 8 DTEVAAPWTEETVK LVHPNPPSVLFGADKDTEVAAPWTEETVKQ KDTEVAAPWTEETVKQCLYLYLALLPQNHK K D T V K Q 2 0 0 1 0 0 3 0 0 0 0 1 0 0 1 0 3 1 0 2 0 0 14 0 1574.7464 Q92797;A0A087WUE9 Q92797 775 788 SYMPK Symplekin yes no 2 0.0012319 64.439 By MS/MS 1 0.65201 0.70716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65201 0.70716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4541500 2724900 1816600 0 0 0 0 0 0 4541500 2724900 1816600 0 0 0 0 0 0 0 0 0 5322 3558 5542 26960 27110 27110 1 DTFLGPVLK VLAFLVLSRVCRHKKDTFLGPVLKQMYITY VCRHKKDTFLGPVLKQMYITYVRNCKFTSP K D T L K Q 0 0 0 1 0 0 0 1 0 0 2 1 0 1 1 0 1 0 0 1 0 0 9 0 988.55933 Q9Y3T9 Q9Y3T9 326 334 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.0098638 48.756 By MS/MS By MS/MS 1 1 0.90794 0.95788 5.2977 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85282 0.92266 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96663 0.99444 NaN 1 0 Median NaN NaN NaN 0 0 Median 4201300 2427300 1774000 0 0 0 0 0 0 2553600 1323200 1230400 0 0 0 1647700 1104100 543630 0 0 0 5323 4433 5543 26961;26962 27111;27112;27113 27111 3 DTGEKLTVAENEAETK GPRDMKSCQFVAVRRDTGEKLTVAENEAET TGEKLTVAENEAETKLQAILEDIQVTLFTR R D T T K L 2 0 1 1 0 0 4 1 0 0 1 2 0 0 0 0 3 0 0 1 0 0 16 1 1733.8319 P07814 P07814 1385 1400 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 4.2132E-05 64.537 By MS/MS By matching 2 1 0.96955 0.85478 15.804 3 Median 0.90544 0.88493 22.17 2 0 Median 0.96955 0.85478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14333000 7144200 7188900 13704000 6758800 6945300 628990 385380 243610 0 0 0 0 0 0 0 0 0 0 0 0 5324 1892 5544 26963;26964;26965 27114;27115;27116 27115 3 DTGELASSFLEFMR ALHSLLKRVVSTFSKDTGELASSFLEFMRQ KDTGELASSFLEFMRQILNSDTIGCCGDDN K D T M R Q 1 1 0 1 0 0 2 1 0 0 2 0 1 2 0 2 1 0 0 0 0 0 14 0 1601.7396 Q69YN4 Q69YN4 1389 1402 KIAA1429 Protein virilizer homolog yes yes 2 0.00084507 58.37 By matching By MS/MS By matching By matching 1 2 1 1 1.04 1.0661 11.302 5 Median NaN NaN NaN 0 0 Median 1.3397 1.1921 NaN 1 0 Median 0.96296 1.0492 2.2587 2 0 Median NaN NaN NaN 0 0 Median 1.1191 1.111 NaN 1 0 Median 1.04 0.87978 NaN 1 0 Median 2814500 1299200 1515300 0 0 0 87757 37051 50707 2516800 1177600 1339200 0 0 0 135260 49294 85963 74734 35226 39508 5325 3130 5545 26966;26967;26968;26969;26970 27117 27117 1 DTGIFLDLMHLK SAKASRARTKAGDLRDTGIFLDLMHLKKPG DLRDTGIFLDLMHLKKPGGFDISLFYRDII R D T L K K 0 0 0 2 0 0 0 1 1 1 3 1 1 1 0 0 1 0 0 0 0 0 12 0 1401.7326 P12956;B1AHC9 P12956 195 206 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0002496 84.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 2 1 2 1.0916 1.0411 18.957 18 Median 1.1284 1.0783 10.772 4 0 Median 1.2697 1.0846 4.142 4 0 Median 1.0086 0.9957 27.272 5 0 Median 1.0841 0.919 29.943 2 0 Median 1.0411 1.0735 NaN 1 0 Median 0.95613 0.89074 11.966 2 0 Median 179630000 81672000 97958000 45706000 20859000 24847000 68810000 29466000 39344000 56838000 27563000 29275000 3985000 1713400 2271600 2140400 1086000 1054400 2150100 984260 1165900 5326 1985 5546;5547 26971;26972;26973;26974;26975;26976;26977;26978;26979;26980;26981;26982;26983;26984;26985;26986;26987;26988 27118;27119;27120;27121;27122;27123;27124;27125;27126;27127;27128;27129;27130;27131;27132;27133;27134;27135;27136;27137 27127 764 20 DTGKTPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K D T H R I 1 1 0 1 0 0 2 1 1 1 0 1 0 0 2 0 2 0 0 2 0 0 15 1 1647.858 P60866;E5RJX2;E5RIP1 P60866 5 19 RPS20 40S ribosomal protein S20 yes no 2;3;4 1.3503E-10 143.93 By MS/MS By MS/MS By MS/MS 3 5 4 0.81578 0.77587 63.669 12 Median 0.79808 0.78559 5.3944 3 0 Median 0.86846 0.76626 97.518 5 1 Median 0.78246 0.8109 18.766 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171970000 100330000 71644000 70946000 38286000 32660000 51466000 36347000 15119000 49557000 25692000 23865000 0 0 0 0 0 0 0 0 0 5327 2530 5548 26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000 27138;27139;27140;27141;27142;27143;27144;27145;27146;27147;27148;27149;27150;27151;27152;27153;27154;27155;27156 27141 19 DTGLGLSPTASLR DTITEWKAGALCLSRDTGLGLSPTASLRVF SRDTGLGLSPTASLRVFQPFFVELTMPYSV R D T L R V 1 1 0 1 0 0 0 2 0 0 3 0 0 0 1 2 2 0 0 0 0 0 13 0 1286.683 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 780 792 yes yes 2 8.9901E-23 164.33 By MS/MS By MS/MS By MS/MS 2 3 1 0.26067 0.21184 215.51 6 Median 3.3382 3.1805 30.102 2 2 Median 0.08308 0.067197 152.04 3 3 Median NaN NaN NaN 0 0 Median 0.042069 0.033464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113500000 31597000 81905000 97695000 21887000 75808000 15384000 9320200 6064200 0 0 0 422620 390370 32255 0 0 0 0 0 0 + 5328 734 5549 27001;27002;27003;27004;27005;27006 27157;27158;27159;27160;27161;27162 27157 6 DTGNFVIGQILSDQSR KGLDIVRRDWCDLAKDTGNFVIGQILSDQS TGNFVIGQILSDQSRDTIVENIQKRLIEIG K D T S R D 0 1 1 2 0 2 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1748.8693 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1089 1104 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 7.3312E-10 103.88 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 3 2 1.0906 1.0668 26.677 12 Median 0.98575 0.94943 3.1406 2 0 Median 1.1529 0.9817 40.005 5 0 Median 1.0202 1.1213 5.7807 3 0 Median 1.3224 1.1716 9.3561 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54861000 25977000 28885000 23597000 11618000 11979000 21690000 9723400 11967000 8696900 4260400 4436400 877660 375160 502500 0 0 0 0 0 0 5329 26 5550 27007;27008;27009;27010;27011;27012;27013;27014;27015;27016;27017;27018 27163;27164;27165;27166;27167;27168;27169;27170;27171;27172;27173;27174;27175 27172 13 DTGQLYAALHHR EDQGVKVFLISASSKDTGQLYAALHHRILA SSKDTGQLYAALHHRILALRSRVEQEQEAK K D T H R I 2 1 0 1 0 1 0 1 2 0 2 0 0 0 0 0 1 0 1 0 0 0 12 0 1380.6898 B7Z7F3;Q9H6Z4;K7EIJ4 B7Z7F3 423 434 RANBP3 Ran-binding protein 3 yes no 3 2.512E-06 98.04 By MS/MS By MS/MS 2 1 1.0061 0.94975 27.976 3 Plateau 0.75539 0.73304 36.628 2 0 Median 1.0173 0.88042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32020000 16215000 15805000 26563000 13285000 13278000 5456800 2929700 2527100 0 0 0 0 0 0 0 0 0 0 0 0 5330 636 5551 27019;27020;27021 27176;27177;27178;27179 27177 4 DTHDQLSEPSEVR HLPLEVAYQRGYLNKDTHDQLSEPSEVRSY NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ K D T V R S 0 1 0 2 0 1 2 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1511.6852 Q15149;H0YDN1 Q15149 3969 3981 PLEC Plectin yes no 3 8.7437E-06 92.039 By matching By MS/MS By MS/MS By MS/MS 1 3 1 1 1.1174 1.0135 14.618 6 Median 0.87024 0.87376 NaN 1 0 Median 1.3301 1.0767 12.486 3 0 Median 1.1399 1.2668 NaN 1 0 Median 1.0953 0.9539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21049000 9629600 11419000 1321800 776180 545640 14693000 6534000 8158700 2263000 1026000 1237100 2771500 1293500 1478000 0 0 0 0 0 0 5331 2933 5552 27022;27023;27024;27025;27026;27027 27180;27181;27182;27183 27181 4 DTIIDVVGAPLTPNSR AEPAVTEPGLGPDPKDTIIDVVGAPLTPNS TIIDVVGAPLTPNSRKRRESASSSSSVKKA K D T S R K 1 1 1 2 0 0 0 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 16 0 1666.889 Q9NPF5 Q9NPF5 434 449 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 2 2.3934E-06 78.692 By MS/MS 1 3.6658 3.6494 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.6658 3.6494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17541000 3489700 14052000 0 0 0 0 0 0 17541000 3489700 14052000 0 0 0 0 0 0 0 0 0 5332 4050 5553 27028 27184 27184 1 DTILAELLQIHK NSEKKKKRDTPMLPKDTILAELLQIHKEHI LPKDTILAELLQIHKEHIVGYHEHDSLLDH K D T H K E 1 0 0 1 0 1 1 0 1 2 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1392.7977 P46100 P46100 2234 2245 ATRX Transcriptional regulator ATRX yes yes 2 0.0031404 46.891 By MS/MS By matching 2 1 1.5123 1.3255 17.785 3 Plateau NaN NaN NaN 0 0 Median 1.4027 1.2249 11.17 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94076 0.92945 NaN 1 0 Median NaN NaN NaN 0 0 Median 7995600 2401800 5593800 0 0 0 7899800 2352600 5547200 0 0 0 0 0 0 95793 49223 46570 0 0 0 5333 2339 5554 27029;27030;27031 27185 27185 1 DTILQLNLK ATDTENIRFVFAAVKDTILQLNLKEYNLV_ VFAAVKDTILQLNLKEYNLV__________ K D T L K E 0 0 1 1 0 1 0 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1056.6179 P29992;K7EL62;P50148 P29992 346 354 GNA11;GNAQ Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha yes no 2 0.00094954 88.942 By MS/MS By MS/MS By matching 1 1 1 1.0401 0.97384 26.261 3 Median 1.0401 0.97384 NaN 1 0 Median 1.03 0.87749 NaN 1 0 Median 1.3061 1.4437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24917000 12896000 12021000 3461700 1684100 1777600 20834000 10933000 9901200 621220 279130 342090 0 0 0 0 0 0 0 0 0 5334 2176 5555 27032;27033;27034 27186;27187;27188 27188 3 DTINLLDQR NDRNIDVFNVEDQKRDTINLLDQREKRNHT VEDQKRDTINLLDQREKRNHTL________ R D T Q R E 0 1 1 2 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1086.5669 Q8NBJ4 Q8NBJ4 386 394 GOLM1 Golgi membrane protein 1 yes yes 2 0.006571 54.157 By MS/MS 1 0.7245 0.73204 NaN 1 Median 0.7245 0.73204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2100200 1142700 957470 2100200 1142700 957470 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5335 3403 5556 27035 27189 27189 1 DTLALLQK LKRAKKKQLRSIEKRDTLALLQKQPPQQPA LRSIEKRDTLALLQKQPPQQPAAKI_____ R D T Q K Q 1 0 0 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 900.52803 Q9H6F5 Q9H6F5 343 350 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.0041257 83.377 By matching By matching By MS/MS By matching 1 2 1 1 1.1927 0.98033 14.091 5 Median NaN NaN NaN 0 0 Median 1.0626 0.95817 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1398 0.96913 15.529 2 0 Median 1.319 1.2598 NaN 1 0 Median 1.1927 0.98033 NaN 1 0 Median 24878000 10597000 14281000 0 0 0 326090 148100 177990 0 0 0 882610 351310 531300 17618000 7294900 10323000 6051200 2802700 3248500 5336 3974 5557 27036;27037;27038;27039;27040 27190 27190 1 DTLENTIGHR LNETQLGIIAPFWLKDTLENTIGHRAAERA PFWLKDTLENTIGHRAAERALQLGLLFPPA K D T H R A 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1154.568 P42126;Q96DC0;H3BS70 P42126 191 200 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 1.5479E-30 205.57 By MS/MS By MS/MS 2 4 1.2113 0.99611 48.662 6 Median 0.66238 0.65323 95.39 2 0 Median 1.2113 0.99611 7.5394 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60764000 28595000 32169000 19506000 9129700 10377000 41257000 19465000 21792000 0 0 0 0 0 0 0 0 0 0 0 0 5337 2305 5558 27041;27042;27043;27044;27045;27046 27191;27192;27193;27194 27191 4 DTLGLFLR TGKTARAIRDMCLEKDTLGLFLREGSASTE RDMCLEKDTLGLFLREGSASTEVLRTEAEQ K D T L R E 0 1 0 1 0 0 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 933.52837 O75643;A0A494C1A5 O75643 746 753 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0035974 86.512 By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 2 1 1.1645 1.1328 10.277 9 Median 1.212 1.2153 13.248 2 0 Median 1.2375 1.0395 9.8914 2 0 Median 0.96919 1.0771 14.498 2 0 Median 1.3147 1.147 1.7646 2 0 Median 1.1645 1.223 NaN 1 0 Median NaN NaN NaN 0 0 Median 16565000 7608000 8956500 2324000 1053300 1270700 3377600 1602300 1775300 6601900 2973000 3628900 1640400 717940 922490 2620600 1261500 1359100 0 0 0 5338 1688 5559 27047;27048;27049;27050;27051;27052;27053;27054;27055 27195;27196;27197;27198;27199;27200;27201 27201 7 DTLLSPDSSFEYVPPKPKPSR LTLLQVASRQKHLPKDTLLSPDSSFEYVPP DSSFEYVPPKPKPSRVKEKFLEQSMDIEDL K D T S R V 0 1 0 2 0 0 1 0 0 0 2 2 0 1 5 4 1 0 1 1 0 0 21 2 2359.206 O95239 O95239 1009 1029 KIF4A Chromosome-associated kinesin KIF4A yes yes 4 0.0092306 28.178 By MS/MS 1 0.43345 0.4939 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43345 0.4939 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9733800 6876000 2857900 0 0 0 0 0 0 9733800 6876000 2857900 0 0 0 0 0 0 0 0 0 5339 1757 5560 27056 27202 27202 1 DTLNKDHGNDKESNVLHQ NEEKAYKETQETQERDTLNKDHGNDKESNV NKDHGNDKESNVLHQ_______________ R D T H Q - 0 0 3 3 0 1 1 1 2 0 2 2 0 0 0 1 1 0 0 1 0 0 18 2 2062.9668 Q9H2K0 Q9H2K0 261 278 MTIF3 Translation initiation factor IF-3, mitochondrial yes yes 4 0.057778 9.9958 By MS/MS 1 1.5353 1.3481 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5353 1.3481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246600 863150 1383400 0 0 0 0 0 0 0 0 0 2246600 863150 1383400 0 0 0 0 0 0 5340 3943 5561 27057 27203 27203 1 DTLQSELVGQLYK SVPKAVMHFLVNHVKDTLQSELVGQLYKSS VKDTLQSELVGQLYKSSLLDDLLTESEDMA K D T Y K S 0 0 0 1 0 2 1 1 0 0 3 1 0 0 0 1 1 0 1 1 0 0 13 0 1492.7773 O00429 O00429 680 692 DNM1L Dynamin-1-like protein yes yes 2 0.0010257 66.435 By MS/MS By MS/MS By matching 2 2 3 1.1223 0.96647 28.574 7 Median NaN NaN NaN 0 0 Median 1.0976 0.95265 2.038 2 0 Median 1.2598 1.3401 9.2029 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96267 0.78395 27.156 3 0 Median 26655000 12454000 14201000 0 0 0 18467000 8751600 9715400 6763500 3041800 3721700 0 0 0 0 0 0 1424600 660810 763800 5341 1463 5562 27058;27059;27060;27061;27062;27063;27064 27204;27205;27206 27206 3 DTLVADNLDQATR VKDEKIRQAFYFALRDTLVADNLDQATRVA LRDTLVADNLDQATRVAYQKDRRWRVVTLQ R D T T R V 2 1 1 3 0 1 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1430.7001 Q9NTJ3;E9PD53 Q9NTJ3 714 726 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 9.4663E-52 190.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 1 1 1.0459 0.98981 22.239 10 Median 1.0828 1.016 NaN 1 0 Median 1.13 0.96432 NaN 1 1 Median 0.99708 1.0962 38.44 3 2 Median 1.2356 1.0907 17.464 4 3 Linear NaN NaN NaN 0 0 Median 0.88915 0.74299 NaN 1 1 Median 93138000 44473000 48666000 30172000 13408000 16764000 7564900 3230900 4334100 35719000 18459000 17260000 18465000 8752100 9712500 0 0 0 1217800 623080 594730 5342 4108 5563 27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075 27207;27208;27209;27210;27211;27212;27213;27214;27215;27216 27209 10 DTLVQGLNEAGDDLEAVAK RKRDEKEKFEPTVFRDTLVQGLNEAGDDLE QGLNEAGDDLEAVAKFLDSTGSRLDYRRYA R D T A K F 3 0 1 3 0 1 2 2 0 0 3 1 0 0 0 0 1 0 0 2 0 0 19 0 1956.964 E7ETZ4;Q9Y6E2;Q75MG1;E7EMS9;E9PFE3;C9JF98;F8WDX8 E7ETZ4 32 50 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 8.4576E-22 99.531 By MS/MS By matching 3 1 1.0896 0.99704 81.763 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55088 0.56176 105.72 2 1 Median 1.1183 0.99704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58047000 50707000 7339300 0 0 0 0 0 0 57700000 50568000 7132400 346840 139910 206930 0 0 0 0 0 0 5343 892 5564 27076;27077;27078;27079 27217;27218;27219;27220 27218 4 DTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE R D T V R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P62906 P62906 8 15 RPL10A 60S ribosomal protein L10a yes yes 2 0.0023662 115.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 4 5 1.1652 1.0921 12.233 16 Median 1.0933 1.0342 4.6257 2 0 Median 1.1665 0.9871 NaN 1 0 Median 1.0172 0.99665 15.43 2 1 Median 1.2275 0.95033 17.367 2 1 Median 1.0905 1.1105 18.598 4 0 Median 1.4166 1.1227 7.6655 5 0 Median 287010000 129860000 157150000 138640000 63928000 74713000 41328000 18539000 22790000 25153000 11571000 13582000 5180800 2150900 3029900 55530000 25270000 30260000 21181000 8402300 12778000 5344 2608 5565 27080;27081;27082;27083;27084;27085;27086;27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097 27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239 27221 19 DTMLQALR ELLNGIRAMEDPGVRDTMLQALRFVIQGAG MEDPGVRDTMLQALRFVIQGAGAKVDAVIR R D T L R F 1 1 0 1 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 8 0 946.4906 Q92616 Q92616 2402 2409 GCN1L1 Translational activator GCN1 yes yes 2 0.033626 38.238 By MS/MS 1 1.3274 1.1047 NaN 1 Median NaN NaN NaN 0 0 Median 1.3274 1.1047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470700 683120 787620 0 0 0 1470700 683120 787620 0 0 0 0 0 0 0 0 0 0 0 0 5345 3544 5566 27098 27240 27240 1 DTMSDLPEVR ITRLSSGPFRTITVRDTMSDLPEVRNGASA TITVRDTMSDLPEVRNGASALEISYNGEPQ R D T V R N 0 1 0 2 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1161.5336 P26358;K7ENW7 P26358 1369 1378 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00039409 114.28 By MS/MS By MS/MS By matching 2 3 1 0.74348 0.72561 14.479 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7038 0.76989 10.073 2 0 Median 0.83461 0.73437 18.595 3 0 Median NaN NaN NaN 0 0 Median 0.72878 0.64213 NaN 1 0 Median 35897000 19494000 16403000 0 0 0 0 0 0 28900000 15845000 13055000 6729000 3522400 3206600 0 0 0 267900 126590 141310 5346 2142 5567;5568 27099;27100;27101;27102;27103;27104 27241;27242;27243;27244;27245;27246 27241 904 6 DTMSDQALEALSASLGTR RSAAPPQEKKRKVEKDTMSDQALEALSASL SDQALEALSASLGTRQAEPELDLRSIKEVD K D T T R Q 3 1 0 2 0 1 1 1 0 0 3 0 1 0 0 3 2 0 0 0 0 0 18 0 1864.8837 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;F8W7E0 P20810 284 301 CAST Calpastatin yes no 2 0.0031207 31.228 By MS/MS By MS/MS By MS/MS 2 1 1 1.1917 1.2321 20.123 4 Median 1.3398 1.3456 12.367 2 0 Median 0.99586 0.90522 NaN 1 0 Median 1.1522 1.2312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3309100 1489600 1819500 1375500 553720 821820 791500 399950 391540 1142000 535900 606120 0 0 0 0 0 0 0 0 0 5347 239 5569 27105;27106;27107;27108 27247;27248;27249;27250 27248 4 DTMSLMIR ERDGWCLPKTSDELRDTMSLMIRQTIRSKR KTSDELRDTMSLMIRQTIRSKRPALFSSSA R D T I R Q 0 1 0 1 0 0 0 0 0 1 1 0 2 0 0 1 1 0 0 0 0 0 8 0 965.46742 Q9Y5Q8;Q5T7U1;H7BY84 Q9Y5Q8 449 456 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0069954 68.915 By matching By MS/MS 1 1 1.1343 1.0994 0.53555 2 Median NaN NaN NaN 0 0 Median 1.2326 1.1036 NaN 1 0 Median 1.0439 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2963800 1548000 1415700 0 0 0 293190 131610 161580 2670600 1416400 1254100 0 0 0 0 0 0 0 0 0 5348 4466 5570 27109;27110 27251;27252 27251 2 DTNGENIAESLVAEGLATR KTPQGREYGMIYLGKDTNGENIAESLVAEG ENIAESLVAEGLATRREGMRANNPEQNRLS K D T T R R 3 1 2 1 0 0 3 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 19 0 1958.9545 Q7KZF4 Q7KZF4 117 135 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 2.1358E-09 87.18 By MS/MS By MS/MS By MS/MS 1 1 1 1.0659 1.0712 6.9041 3 Median 1.0279 0.9949 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0659 1.1421 NaN 1 0 Median 1.2547 1.0712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8542300 4156300 4386000 3762100 1820300 1941800 0 0 0 3850500 1926000 1924600 929690 410080 519620 0 0 0 0 0 0 5349 3214 5571 27111;27112;27113 27253;27254;27255;27256;27257;27258 27254 6 DTNGENIAESLVAEGLATRR KTPQGREYGMIYLGKDTNGENIAESLVAEG NIAESLVAEGLATRREGMRANNPEQNRLSE K D T R R E 3 2 2 1 0 0 3 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 20 1 2115.0556 Q7KZF4 Q7KZF4 117 136 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.0056407 23.33 By MS/MS 1 1.0174 1.1304 NaN 1 Median 1.0174 1.1304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2046700 825280 1221400 2046700 825280 1221400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5350 3214 5572 27114 27259;27260 27259 2 DTNGSQFFITTVK KHYGPGWVSMANAGKDTNGSQFFITTVKTA GKDTNGSQFFITTVKTAWLDGKHVVFGKVL K D T V K T 0 0 1 1 0 1 0 1 0 1 0 1 0 2 0 1 3 0 0 1 0 0 13 0 1456.7198 P23284 P23284 146 158 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 1.3011E-06 141.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 1.2123 1.1676 8.2021 11 Median 1.1065 1.0332 2.7519 2 0 Median 1.345 1.1466 3.5865 2 0 Median 1.0555 1.0069 3.5041 2 0 Median 1.4343 1.183 1.8477 2 0 Median 1.1575 1.2316 0.39897 2 0 Median 1.4151 1.1819 NaN 1 0 Median 376720000 173150000 203570000 60735000 28749000 31986000 8997500 3706800 5290700 247620000 116240000 131380000 34948000 13745000 21204000 23783000 10451000 13333000 635820 260580 375240 5351 2109 5573 27115;27116;27117;27118;27119;27120;27121;27122;27123;27124;27125 27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272;27273;27274 27268 14 DTNMGAWFEAQVVR TELGLYKVNEYVDARDTNMGAWFEAQVVRV RDTNMGAWFEAQVVRVTRKAPSRDEPCSST R D T V R V 2 1 1 1 0 1 1 1 0 0 0 0 1 1 0 0 1 1 0 2 0 0 14 0 1622.7511 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 158 171 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0041629 56.359 By MS/MS By matching By MS/MS By matching 2 1 2 2 0.99429 0.8827 17.749 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79556 0.85167 8.6569 2 1 Median 1.0759 0.8827 NaN 1 0 Median 0.8866 0.92919 13.506 2 0 Median 1.259 1.0862 31.274 2 0 Median 5395200 2963100 2432100 0 0 0 0 0 0 3576900 2054700 1522200 66596 29703 36893 1620500 822670 797780 131200 56027 75175 5352 20 5574;5575 27126;27127;27128;27129;27130;27131;27132 27275;27276;27277;27278;27279 27279 5 5 DTNVMLVALAAK DYADLVKALKKVVGKDTNVMLVALAAKCLT VGKDTNVMLVALAAKCLTGLAVGLRKKFGQ K D T A K C 3 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 2 0 0 12 0 1244.6799 Q14008 Q14008 331 342 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0049914 47.198 By MS/MS By MS/MS 1 1 0.88301 0.88411 7.7547 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84285 0.93395 NaN 1 1 Median 0.9251 0.83694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10680000 5646800 5033100 0 0 0 0 0 0 8334800 4479900 3854800 2345100 1166800 1178300 0 0 0 0 0 0 5353 2850 5576 27133;27134 27280;27281 27281 1532 2 DTPDEPWAFPAR GNLARRAAATQPDAKDTPDEPWAFPAREFL DAKDTPDEPWAFPAREFLRKKLIGKEVCFT K D T A R E 2 1 0 2 0 0 1 0 0 0 0 0 0 1 3 0 1 1 0 0 0 0 12 0 1400.6361 Q7KZF4 Q7KZF4 72 83 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00047426 77.677 By MS/MS By MS/MS By MS/MS 1 1 1 0.64686 0.61687 7.0341 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60724 0.64833 NaN 1 0 Median 0.68907 0.58694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6709200 3939600 2769600 0 0 0 0 0 0 4925000 2973400 1951700 1784200 966290 817880 0 0 0 0 0 0 5354 3214 5577 27135;27136;27137 27282;27283;27284;27285;27286 27284 5 DTPENNPDTPFDFTPENYKR TVMQNGAGGALFVHRDTPENNPDTPFDFTP NPDTPFDFTPENYKRIEAIVKNYPEGHKAA R D T K R I 0 1 3 3 0 0 2 0 0 0 0 1 0 2 4 0 3 0 1 0 0 0 20 1 2396.0557 E7EPT4;P19404 E7EPT4 46 65 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 3 0.07422 3.0529 By MS/MS 1 0.94691 0.89015 NaN 1 Median NaN NaN NaN 0 0 Median 0.94691 0.89015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 871100 397590 473510 0 0 0 871100 397590 473510 0 0 0 0 0 0 0 0 0 0 0 0 5355 873 5578 27138 27287 27287 1 DTPGFIVNR VDFSKALGKHPVSCKDTPGFIVNRLLVPYL HPVSCKDTPGFIVNRLLVPYLMEAIRLYER K D T N R L 0 1 1 1 0 0 0 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 9 0 1017.5243 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQ78;A0A1W2PQV5 A0A0D9SFP2 217 225 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.0026903 85.265 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.94156 0.85526 28.4 5 Median 0.91515 0.85526 NaN 1 1 Median 1.5714 1.3068 NaN 1 1 Median 0.75294 0.7455 NaN 1 0 Median 1.2491 1.0689 36.323 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60795000 28071000 32724000 38154000 19346000 18808000 13983000 4171000 9812100 4888000 3078600 1809400 3769900 1475000 2295000 0 0 0 0 0 0 5356 269 5579 27139;27140;27141;27142;27143 27288;27289;27290;27291 27288 4 DTPGHGSGWAETPR SARKNRWDETPKTERDTPGHGSGWAETPRT RDTPGHGSGWAETPRTDRGGDSIGETPTPG R D T P R T 1 1 0 1 0 0 1 3 1 0 0 0 0 0 2 1 2 1 0 0 0 0 14 0 1466.6539 O75533 O75533 302 315 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 2.3813E-06 91.441 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 1 0.8096 0.8119 21.796 9 Median NaN NaN NaN 0 0 Median 1.1709 0.99091 26.861 2 0 Median 0.60084 0.66045 26.138 2 0 Median 0.9547 0.8119 NaN 1 0 Median 0.9074 0.95066 8.6502 3 2 Plateau 0.77821 0.65097 NaN 1 0 Median 42081000 22593000 19488000 0 0 0 9635500 5224800 4410700 9664300 5633100 4031200 3217100 1676300 1540800 18461000 9484000 8976600 1103700 575220 528450 5357 1683 5580 27144;27145;27146;27147;27148;27149;27150;27151;27152 27292;27293;27294;27295;27296;27297;27298;27299;27300;27301;27302;27303;27304;27305 27300 14 DTPGLHIGKPENK PTIGYKGITSFLVDRDTPGLHIGKPENKLG DRDTPGLHIGKPENKLGLRASSTCPLTFEN R D T N K L 0 0 1 1 0 0 1 2 1 1 1 2 0 0 2 0 1 0 0 0 0 0 13 1 1404.7361 P45954 P45954 240 252 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 3 0.0013512 41.401 By MS/MS 1 1.0798 0.97844 NaN 1 Median NaN NaN NaN 0 0 Median 1.0798 0.97844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2164900 1093800 1071100 0 0 0 2164900 1093800 1071100 0 0 0 0 0 0 0 0 0 0 0 0 5358 2330 5581 27153 27306 27306 1 DTPTSAGPNSFNK EMPPEAKMRMKNIGRDTPTSAGPNSFNKGK GRDTPTSAGPNSFNKGKHGFSDNQKLWERN R D T N K G 1 0 2 1 0 0 0 1 0 0 0 1 0 1 2 2 2 0 0 0 0 0 13 0 1334.6103 Q8WW12 Q8WW12 138 150 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2 0.014456 33.866 By matching By MS/MS 1 1 0.72021 0.63635 30.174 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83235 0.7877 NaN 1 0 Median 0.62318 0.51409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5331500 2736900 2594600 0 0 0 0 0 0 4604500 2318100 2286500 726950 418850 308100 0 0 0 0 0 0 5359 3505 5582 27154;27155 27307 27307 1 DTQSGSLLFIGR PKLFYADHPFIFLVRDTQSGSLLFIGRLVR LVRDTQSGSLLFIGRLVRPKGDKMRDEL__ R D T G R L 0 1 0 1 0 1 0 2 0 1 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1292.6725 P50454;E9PKH2;H0YEP8 P50454 394 405 SERPINH1 Serpin H1 yes no 2 6.328E-06 118.18 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 1 3 1 1 3 1.1929 1.1782 16.56 12 Median 1.0454 1.0049 7.1109 4 1 Median 1.44 1.2156 NaN 1 0 Median 1.2238 1.1792 20.262 3 0 Plateau NaN NaN NaN 0 0 Median 1.5953 1.5903 NaN 1 1 Median 1.5011 1.2482 4.0832 3 0 Median 160830000 73998000 86836000 41377000 19236000 22141000 1718400 648700 1069700 102020000 48288000 53734000 200540 113230 87309 12925000 4706600 8218700 2590900 1005200 1585600 5360 2414 5583 27156;27157;27158;27159;27160;27161;27162;27163;27164;27165;27166;27167;27168 27308;27309;27310;27311;27312;27313;27314 27313 7 DTSASAVAVGLK KMQLLEIITTEKTSKDTSASAVAVGLKQGK TSKDTSASAVAVGLKQGKVIIVVKDGPGFY K D T L K Q 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 12 0 1117.5979 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 520 531 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00037007 80.688 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.4826 1.2951 21.828 3 Median NaN NaN NaN 0 0 Median 1.4826 1.2951 NaN 1 0 Median 0.91425 0.91393 NaN 1 0 Median 1.5752 1.366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31162000 15377000 15785000 0 0 0 6873500 2477600 4395900 21634000 11528000 10106000 2653800 1371300 1282500 0 0 0 0 0 0 5361 1180 5584 27169;27170;27171;27172 27315;27316;27317;27318;27319 27316 5 DTSATTALELVAGER RNCVKGLVASLISVKDTSATTALELVAGER DTSATTALELVAGERLYNVVVDTEVTGKKL K D T E R L 3 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 3 0 0 1 0 0 15 0 1532.7682 O95347 O95347 534 548 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 2.4483E-08 105.17 By MS/MS By MS/MS By MS/MS 1 1 1 0.80865 0.83364 15.291 2 Median 0.961 0.92883 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.68045 0.74821 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17240000 9385500 7854700 6132100 2989900 3142200 0 0 0 11108000 6395600 4712500 0 0 0 0 0 0 0 0 0 5362 1766 5585 27173;27174;27175 27320;27321;27322 27321 3 DTSEDIEELVEPVAAHGPK QPFKPLSIGGIIILKDTSEDIEELVEPVAA DIEELVEPVAAHGPKIEEEEQEPEPPEPFE K D T P K I 2 0 0 2 0 0 4 1 1 1 1 1 0 0 2 1 1 0 0 2 0 0 19 0 2034.9746 A0A087WW66;Q99460 A0A087WW66 916 934 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 0.00053968 31.801 By MS/MS By matching By matching 3 1 1 1.1666 1.1975 60.972 5 Median 0.76519 0.75976 30.797 3 0 Median 3.5349 3.1504 NaN 1 0 Median 1.1666 1.2185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7878900 4339200 3539800 6052300 3458700 2593600 365660 82473 283190 1461000 798020 662950 0 0 0 0 0 0 0 0 0 5363 54 5586 27176;27177;27178;27179;27180 27323;27324 27324 2 DTSFEQHVLWHTGGK ARFPQLDSTSFANSRDTSFEQHVLWHTGGK DTSFEQHVLWHTGGKGVDLVLNSLAEEKLQ R D T G K G 0 0 0 1 0 1 1 2 2 0 1 1 0 1 0 1 2 1 0 1 0 0 15 0 1740.822 P49327;A0A0U1RQF0 P49327 1725 1739 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3;4 1.1437E-58 234.79 By MS/MS By MS/MS By MS/MS By matching By matching 6 8 1 1 1 1.4233 1.279 22.832 17 Median 1.0789 1.0308 18.516 6 0 Median 1.4817 1.3154 10.088 8 0 Median 1.0629 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2101 2.3177 NaN 1 0 Median 1.4744 1.5146 NaN 1 0 Median 363530000 163260000 200270000 224980000 107070000 117910000 122090000 49933000 72157000 11316000 4926200 6389900 0 0 0 4765600 1180300 3585300 381690 147810 233890 5364 2377 5587 27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197 27325;27326;27327;27328;27329;27330;27331;27332;27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343 27329 19 DTSFLGSDDIGNIDVR QSALYDALFSSQSPKDTSFLGSDDIGNIDV TSFLGSDDIGNIDVREPELEDLTRYDVGAI K D T V R E 0 1 1 4 0 0 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1722.8061 P49792 P49792 397 412 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 7.1678E-05 76.522 By MS/MS 1 0.69741 0.7658 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69741 0.7658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3099200 1679000 1420200 0 0 0 0 0 0 3099200 1679000 1420200 0 0 0 0 0 0 0 0 0 5365 2401 5588 27198 27344;27345 27344 2 DTSFSGLSLEEYK QAFREGENTQYPRPRDTSFSGLSLEEYKLI PRDTSFSGLSLEEYKLILSTDTLEELKEID R D T Y K L 0 0 0 1 0 0 2 1 0 0 2 1 0 1 0 3 1 0 1 0 0 0 13 0 1474.6828 Q5TAQ0;V5IRT4;Q9BRT2 Q5TAQ0 52 64 UQCC2 Ubiquinol-cytochrome-c reductase complex assembly factor 2 yes no 2 1.3713E-06 116.23 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3284 1.1755 24.122 4 Median 1.2241 1.1557 NaN 1 0 Median 2.0723 1.7655 NaN 1 0 Median 1.0519 1.0059 NaN 1 0 Median 1.4416 1.1957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25471000 11534000 13938000 11510000 4759000 6751400 471090 130070 341020 13123000 6483200 6639700 367160 161600 205560 0 0 0 0 0 0 5366 3100 5589 27199;27200;27201;27202 27346;27347;27348;27349 27348 4 DTSGAAALEMMSQAMIR NPCAQVIFDSDPAPKDTSGAAALEMMSQAM SGAAALEMMSQAMIRGMMDEEGNQFVAYFL K D T I R G 4 1 0 1 0 1 1 1 0 1 1 0 3 0 0 2 1 0 0 0 0 0 17 0 1781.811 Q8N7H5;B4DGJ5 Q8N7H5 231 247 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.001731 36.847 By matching By MS/MS By matching 1 1 1 1.0502 1.1046 10.31 3 Median 0.94537 0.92515 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0502 1.1046 NaN 1 0 Median 1.2808 1.1074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5005400 2337400 2668000 459220 175240 283980 0 0 0 4361800 2092300 2269500 184330 69860 114470 0 0 0 0 0 0 5367 3393 5590 27203;27204;27205 27350;27351 27351 2 DTSLETR DYVVVSTEMQSSESKDTSLETRRQLALKAF EMQSSESKDTSLETRRQLALKAFTHTAQYD K D T T R R 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 7 0 820.39266 P31939;C9JLK0 P31939 165 171 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.043375 56.122 By MS/MS 1 1.237 1.0792 NaN 1 Median NaN NaN NaN 0 0 Median 1.237 1.0792 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 819320 375920 443400 0 0 0 819320 375920 443400 0 0 0 0 0 0 0 0 0 0 0 0 5368 2207 5591 27206 27352 27352 1 DTSLYRPALEELRR LQDELEMLVERLGEKDTSLYRPALEELRRQ KDTSLYRPALEELRRQIRSSTTSMTSVPKP K D T R R Q 1 3 0 1 0 0 2 0 0 0 3 0 0 0 1 1 1 0 1 0 0 0 14 2 1717.9111 Q13200;C9JPC0;H7C2Q3 Q13200 67 80 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.0019793 36.944 By MS/MS By matching By matching 2 1 1 1.045 1.4551 19.176 4 Linear 1.0954 1.2242 7.9704 2 0 Median NaN NaN NaN 0 0 Median 1.0475 1.2707 NaN 1 0 Median 1.0367 0.8556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33853000 16351000 17503000 27618000 13646000 13972000 0 0 0 5182800 2275000 2907800 1052100 429160 622970 0 0 0 0 0 0 5369 2796 5592 27207;27208;27209;27210 27353;27354 27354 2 DTSNHFHVFVGDLSPEITTEDIK EVKVNWATTPSSQKKDTSNHFHVFVGDLSP FVGDLSPEITTEDIKSAFAPFGKISDARVV K D T I K S 0 0 1 3 0 0 2 1 2 2 1 1 0 2 1 2 3 0 0 2 0 0 23 0 2600.2395 Q01085;E7ETJ9;E7ETC0;A6NKZ9;C9JTN7;H7BY49 Q01085 92 114 TIAL1;TIA1 Nucleolysin TIAR no no 3;4 8.2591E-17 73.389 By MS/MS By matching 3 1 0.96996 1.0019 23.417 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96996 1.0292 6.6793 3 0 Plateau 1.8202 1.532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40556000 18603000 21954000 0 0 0 0 0 0 39682000 18335000 21348000 873970 267810 606170 0 0 0 0 0 0 5370 2682;724 5593 27211;27212;27213;27214 27355;27356;27357;27358 27356 4 DTSVEGSEMVPGK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE GRDTSVEGSEMVPGKVELQEKVVQVSAGDS R D T G K V 0 0 0 1 0 0 2 2 0 0 0 1 1 0 1 2 1 0 0 2 0 0 13 0 1334.6024 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 102 114 RCC1 Regulator of chromosome condensation yes no 2 3.4663E-08 123.51 By matching By MS/MS By MS/MS 1 2 4 0.99055 0.89321 26.606 7 Median NaN NaN NaN 0 0 Median 1.2887 1.1273 NaN 1 0 Median 1.0713 1.0828 30.534 2 0 Median 0.98985 0.88824 32.899 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108640000 54483000 54159000 0 0 0 1241300 556520 684800 42423000 22907000 19516000 64978000 31020000 33958000 0 0 0 0 0 0 5371 2061 5594;5595 27215;27216;27217;27218;27219;27220;27221 27359;27360;27361;27362;27363;27364 27362 828 6 DTSVEGSEMVPGKVELQEK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE EGSEMVPGKVELQEKVVQVSAGDSHTAALT R D T E K V 0 0 0 1 0 1 4 2 0 0 1 2 1 0 1 2 1 0 0 3 0 0 19 1 2060.9936 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 102 120 RCC1 Regulator of chromosome condensation yes no 2;3 6.6542E-58 223.03 By MS/MS By MS/MS By MS/MS By matching 6 5 3 5 0.92954 0.94793 8.8087 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84981 0.90424 5.1962 6 0 Median 1.0598 1.0066 4.9505 5 0 Median 0.89268 0.95368 3.788 3 0 Median 1.0101 0.8859 12.443 5 0 Median 592370000 289880000 302490000 0 0 0 0 0 0 282910000 146880000 136030000 235780000 108590000 127190000 63893000 29817000 34076000 9790600 4594700 5195900 5372 2061 5596;5597 27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240 27365;27366;27367;27368;27369;27370;27371;27372;27373;27374;27375;27376;27377;27378;27379;27380;27381;27382;27383;27384;27385 27385 828 21 DTTAAHQALLVAK EDNPFSWKNFVDTVRDTTAAHQALLVAKNV VRDTTAAHQALLVAKNVDSFPQNQERFGGG R D T A K N 4 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1337.7303 A0A0G2JQE3;H0YB78;A0A0U1RR18;A0A0G2JNW7;Q9Y666 A0A0G2JQE3 175 187 SLC12A7 Solute carrier family 12 member 7 yes no 2 0.0012219 72.2 By MS/MS 1 1.4267 1.2441 NaN 1 Median NaN NaN NaN 0 0 Median 1.4267 1.2441 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4288300 1570500 2717700 0 0 0 4288300 1570500 2717700 0 0 0 0 0 0 0 0 0 0 0 0 5373 282 5598 27241 27386 27386 1 DTTALSFFHMLNGAALR INILKEMKEKDVLIKDTTALSFFHMLNGAA TALSFFHMLNGAALRGEIETVKQLHEAIVT K D T L R G 3 1 1 1 0 0 0 1 1 0 3 0 1 2 0 1 2 0 0 0 0 0 17 0 1863.9302 P42704 P42704 783 799 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00038529 44.188 By MS/MS 1 1.1288 1.1048 NaN 1 Median 1.1288 1.1048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2671800 1199500 1472400 2671800 1199500 1472400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5374 2315 5599 27242 27387 27387 1 DTTAVPYVFQDDPYLMPASSLESR DKVAVLQALASTVNRDTTAVPYVFQDDPYL QDDPYLMPASSLESRSFLLAKKSGENVAKF R D T S R S 2 1 0 3 0 1 1 0 0 0 2 0 1 1 3 3 2 0 2 2 0 0 24 0 2701.2581 Q96EY7;B8ZZQ4 Q96EY7 81 104 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 3 0.032117 11.966 By MS/MS 2 0.63044 0.63045 8.017 2 Median 0.63044 0.63045 8.017 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3165900 1998400 1167500 3165900 1998400 1167500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5375 3644 5600 27243;27244 27388;27389 27389 2 DTTLFDLSQFGSSNTSHENLQK NAVSSEDSKRQINQKDTTLFDLSQFGSSNT SQFGSSNTSHENLQKTASKSANKRSKSIYT K D T Q K T 0 0 2 2 0 2 1 1 1 0 3 1 0 2 0 4 3 0 0 0 0 0 22 0 2468.1456 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 194 215 MSH3 DNA mismatch repair protein Msh3 yes no 3 2.1462E-09 54.658 By MS/MS By matching 1 1 1.1517 1.1027 12.288 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94138 1.0109 NaN 1 0 Median 1.4091 1.2028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7633900 3727100 3906800 0 0 0 0 0 0 7278200 3580500 3697600 355700 146550 209150 0 0 0 0 0 0 5376 2080 5601 27245;27246 27390;27391 27391 2 DTTMYAVSADSK TLEKHGGICDCQTSRDTTMYAVSADSKGLD TSRDTTMYAVSADSKGLDTVVALLADVVLQ R D T S K G 2 0 0 2 0 0 0 0 0 0 0 1 1 0 0 2 2 0 1 1 0 0 12 0 1287.5653 Q10713 Q10713 147 158 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.00023271 84.658 By matching By MS/MS 1 1 0.69187 0.62406 82.874 2 Median 0.36211 0.34732 NaN 1 0 Median 1.3219 1.1213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18652000 11381000 7270900 9866300 7501100 2365300 8785700 3880000 4905600 0 0 0 0 0 0 0 0 0 0 0 0 5377 2754 5602 27247;27248 27392 27392 1 DTVATQLSEAVDATR SSKVSGAQEMVSSAKDTVATQLSEAVDATR DTVATQLSEAVDATRGAVQSGVDKTKSVVT K D T T R G 3 1 0 2 0 1 1 0 0 0 1 0 0 0 0 1 3 0 0 2 0 0 15 0 1575.774 O60664;K7ERZ3;K7EL96 O60664 141 155 PLIN3 Perilipin-3 yes no 2 5.534E-14 144.65 By MS/MS By matching By matching By matching 2 2 1 1 1.0257 0.99924 27.253 6 Median 0.9266 0.91003 55.063 2 1 Median 1.1354 0.97391 16.748 2 0 Median 0.84142 0.91073 NaN 1 0 Median 1.0536 1.1467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18337000 8741700 9594800 10929000 5225700 5703800 5322200 2305500 3016700 1874000 1102100 771930 210870 108520 102340 0 0 0 0 0 0 5378 1624 5603 27249;27250;27251;27252;27253;27254 27393;27394;27395 27393 3 DTVDPVQDEMLAR TEPIISRFDILCVVRDTVDPVQDEMLARFV VRDTVDPVQDEMLARFVVGSHVRHHPSNKE R D T A R F 1 1 0 3 0 1 1 0 0 0 1 0 1 0 1 0 1 0 0 2 0 0 13 0 1487.6926 P49736;H0Y8E6 P49736 665 677 MCM2 DNA replication licensing factor MCM2 yes no 2 4.4682E-07 133.81 By matching By MS/MS By MS/MS 1 2 2 0.75167 0.723 28.159 5 Median 0.75167 0.723 NaN 1 0 Median 1.2133 1.0524 6.9017 2 0 Median 0.56752 0.61263 10.423 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61545000 36228000 25316000 27882000 15892000 11990000 6771800 2305700 4466100 26891000 18031000 8860100 0 0 0 0 0 0 0 0 0 5379 2393 5604 27255;27256;27257;27258;27259 27396;27397;27398;27399 27396 4 DTVEVALEDKGDSTFR TGDVAVVIVDPQGRRDTVEVALEDKGDSTF TVEVALEDKGDSTFRCTYRPAMEGPHTVHV R D T F R C 1 1 0 3 0 0 2 1 0 0 1 1 0 1 0 1 2 0 0 2 0 0 16 1 1780.8479 Q14315 Q14315 422 437 FLNC Filamin-C yes yes 2 0.0030929 43.991 By matching By MS/MS 1 1 1.214 1.175 26.622 2 Median 1.4108 1.4184 NaN 1 0 Median 1.0447 0.97342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14984000 6583500 8400400 9897000 3980700 5916300 5086900 2602800 2484100 0 0 0 0 0 0 0 0 0 0 0 0 5380 2871 5605 27260;27261 27400 27400 1 DTVTISGPQAPVFEFVEQLRK QRCPPGVVPACHNSKDTVTISGPQAPVFEF GPQAPVFEFVEQLRKEGVFAKEVRTGGMAF K D T R K E 1 1 0 1 0 2 2 1 0 1 1 1 0 2 2 1 2 0 0 3 0 0 21 1 2360.2376 P49327;A0A0U1RQF0 P49327 647 667 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.2945E-07 49.34 By MS/MS By MS/MS 3 2 1.012 0.96239 21.212 5 Median 0.81377 0.82063 28.326 3 0 Median 1.0948 1.0363 10.463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12845000 6329800 6515500 6791800 3540500 3251300 6053400 2789300 3264200 0 0 0 0 0 0 0 0 0 0 0 0 5381 2377 5606 27262;27263;27264;27265;27266 27401;27402;27403;27404;27405;27406 27402 6 DTVYAVIPAEK AEEIKQIWQQYFAAKDTVYAVIPAEKFDLI FAAKDTVYAVIPAEKFDLIWNRAQSCPTNV K D T E K F 2 0 0 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 1 2 0 0 11 0 1204.634 H0YEW4;A8MRA7;I3L448;Q5TC12 H0YEW4 87 97 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 yes no 2 0.016996 55.084 By MS/MS 1 2.2452 2.0379 NaN 1 Median 2.2452 2.0379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27713000 9262400 18451000 27713000 9262400 18451000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5382 540 5607 27267 27407 27407 1 DTWHQVYR NLESRGVEVDPSLIKDTWHQVYRRHFLKTA VDPSLIKDTWHQVYRRHFLKTALNHCNLCR K D T Y R R 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 1 0 0 8 0 1103.5148 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;H7C141 A0A2R8Y3X5 729 736 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.029429 39.663 By MS/MS 1 1.1512 1.0001 NaN 1 Median NaN NaN NaN 0 0 Median 1.1512 1.0001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2169300 1063100 1106300 0 0 0 2169300 1063100 1106300 0 0 0 0 0 0 0 0 0 0 0 0 5383 357 5608 27268 27408 27408 1 DTYIENEK SAVEAERLVAGKLKKDTYIENEKLISGKRQ VAGKLKKDTYIENEKLISGKRQELVTKIDH K D T E K L 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1010.4557 P04843;B7Z4L4 P04843 580 587 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS 1 1 1 1.0797 1.092 6.9163 3 Plateau 1.0566 1.0104 NaN 1 0 Median 1.1554 0.97725 NaN 1 1 Median 1.0797 1.1162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18313000 8915700 9396800 5306000 2583200 2722800 5887900 2774700 3113200 7118600 3557900 3560700 0 0 0 0 0 0 0 0 0 5384 1853 5609 27269;27270;27271 27409;27410;27411;27412;27413 27412 5 DTYMLSSTVSSK FTSWKEKNQDRSALKDTYMLSSTVSSKILR ALKDTYMLSSTVSSKILRAIALKEGFHFEE K D T S K I 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 4 2 0 1 1 0 0 12 0 1317.6122 Q96G03 Q96G03 371 382 PGM2 Phosphoglucomutase-2 yes yes 2 0.053644 25.386 By MS/MS 2 1.3547 1.1984 4.3277 2 Median NaN NaN NaN 0 0 Median 1.3547 1.1984 4.3277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131200 940230 1191000 0 0 0 2131200 940230 1191000 0 0 0 0 0 0 0 0 0 0 0 0 5385 3652 5610 27272;27273 27414 27414 1 DTYVSSFPR SSGNVSNRKDETNARDTYVSSFPRAPSTSD DETNARDTYVSSFPRAPSTSDSVRLKCREM R D T P R A 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 1 0 0 9 0 1070.5033 A0A1W2PPZ5;P23193;A0A1W2PRL9 A0A1W2PPZ5 124 132 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.0007314 101.6 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.85797 0.80266 3.2411 4 Median 0.82449 0.81724 NaN 1 0 Median 0.8928 0.78835 NaN 1 0 Median 0.79684 0.77574 NaN 1 0 Median 0.98061 0.83261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27434000 14445000 12989000 5400100 3035600 2364500 563610 268930 294680 14691000 7777800 6913600 6779300 3362900 3416400 0 0 0 0 0 0 5386 341 5611 27274;27275;27276;27277 27415;27416;27417;27418;27419;27420 27417 6 DVAEEIANYRPTLDTLHEQASALPQEHAESPDVR GHDEYSTQSLVKKHKDVAEEIANYRPTLDT ASALPQEHAESPDVRGRLSGIEERYKEVAE K D V V R G 5 2 1 3 0 2 5 0 2 1 3 0 0 0 3 2 2 0 1 2 0 0 34 1 3800.8242 Q01082;A0A087WUZ3 Q01082 788 821 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 4 9.9653E-06 33.646 By MS/MS 1 0.49016 0.61919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49016 0.61919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11205000 7382200 3822500 0 0 0 0 0 0 11205000 7382200 3822500 0 0 0 0 0 0 0 0 0 5387 2681 5612 27278 27421;27422 27422 2 DVAEQLEK YEIIIIDDGSPDGTRDVAEQLEKIYGSDRI GSPDGTRDVAEQLEKIYGSDRILLRPREKK R D V E K I 1 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 930.46583 Q5QPK2;H0Y368;O60762;Q5QPJ9 Q5QPK2 73 80 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2 0.0044602 87.323 By MS/MS By MS/MS 1 1 1.7121 1.6043 3.9757 2 Median 1.7699 1.6501 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.6562 1.5598 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15556000 4721500 10835000 9562700 2866500 6696200 0 0 0 5993800 1855000 4138800 0 0 0 0 0 0 0 0 0 5388 1142 5613 27279;27280 27423;27424 27424 2 DVAEVDTVR RELYQQLQRGERSVRDVAEVDTVRRALRGA GERSVRDVAEVDTVRRALRGANVIAGVWLE R D V V R R 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 9 0 1002.4982 Q15149;H0YDN1 Q15149 3146 3154 PLEC Plectin yes no 2 0.012642 60.91 By MS/MS 1 1.1174 0.90456 NaN 1 Median NaN NaN NaN 0 0 Median 1.1174 0.90456 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11599000 5681100 5918000 0 0 0 11599000 5681100 5918000 0 0 0 0 0 0 0 0 0 0 0 0 5389 2933 5614 27281 27425 27425 1 DVAIEIEER RLMAEIQDLKSRGGKDVAIEIEERRIQSCV KSRGGKDVAIEIEERRIQSCVHFMTLKKLN K D V E R R 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 9 0 1072.5401 Q13769;F8WCP5;C9JXG5;H7C441;C9JXU6;F5GZF3;C9JCL9 Q13769 79 87 THOC5 THO complex subunit 5 homolog yes no 2 0.0028118 69.423 By MS/MS By MS/MS 1 1 0.20387 0.19506 211.47 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.041158 0.043729 NaN 1 1 Median 1.0098 0.87012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5178800 3766300 1412500 0 0 0 0 0 0 3045300 2783700 261590 2133500 982590 1150900 0 0 0 0 0 0 5390 2837 5615 27282;27283 27426;27427;27428 27428 3 DVAIKEPLVDVVDPK HWWENVYGFDMSCIKDVAIKEPLVDVVDPK DVAIKEPLVDVVDPKQLVTNACLIKEVDIY K D V P K Q 1 0 0 3 0 0 1 0 0 1 1 2 0 0 2 0 0 0 0 4 0 0 15 1 1635.9083 E9PKG1;Q99873;E9PQ98;E9PIX6 E9PKG1 183 197 PRMT1 Protein arginine N-methyltransferase 1 yes no 2;3 0.0012039 70.942 By matching By matching By MS/MS 3 2 2 0.7458 0.75755 6.2352 7 Median 0.7458 0.73695 7.2578 3 0 Median 0.80129 0.72949 9.7696 2 0 Median 0.69666 0.75916 0.30132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29624000 16321000 13303000 11623000 6375900 5247500 1052600 592100 460460 16948000 9353100 7594700 0 0 0 0 0 0 0 0 0 5391 947 5616 27284;27285;27286;27287;27288;27289;27290 27429;27430;27431;27432 27431 4 DVAKPVIELYK DDKPEAVAARLRQYKDVAKPVIELYKSRGV RQYKDVAKPVIELYKSRGVLHQFSGTETNK K D V Y K S 1 0 0 1 0 0 1 0 0 1 1 2 0 0 1 0 0 0 1 2 0 0 11 1 1273.7282 P27144;D3DQ64 P27144 176 186 AK4 Adenylate kinase 4, mitochondrial yes no 2;3 0.00015817 84.17 By MS/MS By matching By matching 2 2 1 1.1013 1.1073 48.079 5 Median 0.81771 0.83109 1.5537 2 0 Median 1.929 1.7676 59.022 2 0 Median 1.1013 1.1073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35333000 17650000 17683000 29827000 15455000 14371000 2890700 1072500 1818200 2615800 1122100 1493600 0 0 0 0 0 0 0 0 0 5392 2151 5617 27291;27292;27293;27294;27295 27433;27434;27435 27433 3 DVALLQGR AKLQSSQEPEAPPPRDVALLQGRANDLVKY PEAPPPRDVALLQGRANDLVKYLLAKDQTK R D V G R A 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 870.49232 Q9UNF1;Q5H909;Q5H907 Q9UNF1 275 282 MAGED2 Melanoma-associated antigen D2 yes no 2 0.005683 74.415 By matching By MS/MS By matching 1 1 1 1.3347 1.155 41.409 3 Median 0.82361 0.79842 NaN 1 0 Median 1.3347 1.155 NaN 1 0 Median 1.7059 1.8248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14035000 5785900 8249000 3502000 1811200 1690700 7971200 3146500 4824700 2561700 828170 1733500 0 0 0 0 0 0 0 0 0 5393 4343 5618 27296;27297;27298 27436 27436 1 DVALSVLSK EGMEIYSTTLWHLQKDVALSVLSKDLTDMD LWHLQKDVALSVLSKDLTDMDKNSPEAWCA K D V S K D 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 9 0 930.5386 G5EA36 G5EA36 548 556 CDC27 no no 2 0.013728 45.161 By MS/MS By matching By matching 1 2 1 1.2755 1.1689 52.838 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0299 1.137 NaN 1 0 Median 1.8607 1.6483 84.728 2 0 Median NaN NaN NaN 0 0 Median 1.5796 1.2016 NaN 1 0 Median 6395300 2739600 3655700 0 0 0 0 0 0 4556900 2255500 2301400 908720 302150 606560 0 0 0 929620 181940 747670 5394 1135 5619 27299;27300;27301;27302 27437 27437 1 DVAPQAPVHFLVIPK PADILYEDQQCLVFRDVAPQAPVHFLVIPK DVAPQAPVHFLVIPKKPIPRISQAEEEDQQ R D V P K K 2 0 0 1 0 1 0 0 1 1 1 1 0 1 3 0 0 0 0 3 0 0 15 0 1629.9243 Q9BX68 Q9BX68 80 94 HINT2 Histidine triad nucleotide-binding protein 2, mitochondrial yes yes 2 0.00052444 48.741 By MS/MS By matching 1 1 0.57656 0.55714 6.2269 2 Median 0.56458 0.53314 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58879 0.58222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13342000 8434200 4907800 10891000 6880000 4010700 0 0 0 2451300 1554200 897060 0 0 0 0 0 0 0 0 0 5395 3877 5620 27303;27304 27438;27439 27438 2 DVATSPISPTENNTTPPDALTR YTRSVIEPLPVTPTRDVATSPISPTENNTT SPTENNTTPPDALTRNTEKQKKKPKMSDEE R D V T R N 2 1 2 2 0 0 1 0 0 1 1 0 0 0 4 2 5 0 0 1 0 0 22 0 2296.1183 Q13153;E9PM17;B3KNX7;H0YCM0 Q13153 216 237 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase yes no 3 0.00022695 27.32 By MS/MS By matching 2 1 0.65975 0.56622 53.331 3 Median 0.66941 0.67987 73.927 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65975 0.56622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9265500 4818400 4447100 9019000 4680500 4338400 0 0 0 0 0 0 246480 137810 108670 0 0 0 0 0 0 5396 2791 5621 27305;27306;27307 27440 27440 1 DVAVLVSTAK ADTCRRFFDRGYSPKDVAVLVSTAKEVEHY GYSPKDVAVLVSTAKEVEHYKYELLKAMRK K D V A K E 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 3 0 0 10 0 1001.5757 Q7Z7L1 Q7Z7L1 808 817 SLFN11 Schlafen family member 11 yes yes 2 0.0046162 52.579 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.1207 0.97464 22.367 5 Median 0.94033 0.89368 NaN 1 0 Median 1.3048 1.1512 24.555 2 0 Median 1.352 1.455 NaN 1 0 Median 1.1207 0.97464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8537900 4120200 4417700 2556600 1407300 1149300 2647300 1103500 1543800 2382400 1141800 1240600 951570 467540 484030 0 0 0 0 0 0 5397 3262 5622 27308;27309;27310;27311;27312 27441;27442 27441 2 DVAVMQLR VKDRFLRQLDFNSSKDVAVMQLRSGSKFPV LDFNSSKDVAVMQLRSGSKFPVFNMSYNPA K D V L R S 1 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 8 0 930.49569 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 351 358 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0026701 126.24 By MS/MS By MS/MS 2 1 1.2185 1.0283 40.909 3 Median 0.82942 0.80775 54.392 2 0 Median 1.2185 1.0283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20057000 10135000 9922400 14972000 7939800 7031800 5085500 2195000 2890600 0 0 0 0 0 0 0 0 0 0 0 0 5398 2473 5623 27313;27314;27315 27443;27444 27443 2 DVAVSYYHFHR LDQKVKVVYVARNPKDVAVSYYHFHRMEKA RNPKDVAVSYYHFHRMEKAHPEPGTWDSFL K D V H R M 1 1 0 1 0 0 0 0 2 0 0 0 0 1 0 1 0 0 2 2 0 0 11 0 1392.6575 A0A0A6YYL2;P0DMN0;P0DMM9;H3BPL6 A0A0A6YYL2 134 144 SULT1A4;SULT1A3 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3 yes no 3 0.0016271 60.434 By MS/MS 1 2.4387 2.0357 NaN 1 Median NaN NaN NaN 0 0 Median 2.4387 2.0357 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4136000 1231000 2905000 0 0 0 4136000 1231000 2905000 0 0 0 0 0 0 0 0 0 0 0 0 5399 208 5624 27316 27445 27445 1 DVAVSYYHFYHMAK LDQKVKVVYVARNAKDVAVSYYHFYHMAKV KDVAVSYYHFYHMAKVHPEPGTWDSFLEKF K D V A K V 2 0 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 0 3 2 0 0 14 0 1729.7923 P50225;H3BRY5;P50226;H3BQX5;E9PKR8 P50225 134 147 SULT1A1;SULT1A2 Sulfotransferase 1A1;Sulfotransferase;Sulfotransferase 1A2 yes no 3;4 0.00049306 46.481 By MS/MS By matching 2 1 1.078 1.0039 21.081 3 Median 1.0382 0.95341 7.2942 2 0 Median NaN NaN NaN 0 0 Median 1.4189 1.3584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75763000 36520000 39244000 71341000 34762000 36579000 0 0 0 4422700 1757800 2664900 0 0 0 0 0 0 0 0 0 5400 2410 5625 27317;27318;27319 27446;27447;27448;27449 27447 4 DVAVVAGGLGR YTAALTAVRPSRVARDVAVVAGGLGRQLLQ RVARDVAVVAGGLGRQLLQKQPVSPVIHPP R D V G R Q 2 1 0 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1012.5665 Q15904;A0A0C4DGX8;A6NLC6 Q15904 232 242 ATP6AP1 V-type proton ATPase subunit S1 yes no 2 0.030491 48.794 By MS/MS 1 1.0108 0.87468 NaN 1 Median NaN NaN NaN 0 0 Median 1.0108 0.87468 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9358500 5058600 4299900 0 0 0 9358500 5058600 4299900 0 0 0 0 0 0 0 0 0 0 0 0 5401 257 5626 27320 27450 27450 1 DVAYQYVK KTTWHRISVFRPGLRDVAYQYVKKGSRIYL VFRPGLRDVAYQYVKKGSRIYLEGKIDYGE R D V V K K 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 8 0 984.49165 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 96 103 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0044267 81.635 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1 1.2888 1.2041 17.522 9 Median 1.067 0.98862 3.8814 2 0 Median 1.4676 1.2041 NaN 1 0 Median 1.1429 1.0794 NaN 1 0 Median 1.4841 1.1859 NaN 1 0 Median 1.2888 1.3962 12.1 3 0 Median 1.5925 1.3058 NaN 1 0 Median 183070000 79116000 103960000 24052000 11127000 12925000 48167000 19113000 29054000 64202000 29724000 34478000 21470000 8438200 13032000 22844000 9831800 13012000 2336400 882320 1454100 5402 2713 5627 27321;27322;27323;27324;27325;27326;27327;27328;27329 27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463 27460 13 DVAYQYVKK KTTWHRISVFRPGLRDVAYQYVKKGSRIYL FRPGLRDVAYQYVKKGSRIYLEGKIDYGEY R D V K K G 1 0 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 0 2 2 0 0 9 1 1112.5866 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 96 104 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0026172 77.058 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2355 1.3198 24.259 5 Linear 0.93666 0.87715 NaN 1 0 Median 1.5346 1.3304 NaN 1 0 Median 1.2355 1.2625 NaN 1 0 Median 1.5958 1.3385 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96186 0.81421 NaN 1 0 Median 11503000 5070600 6432800 1614200 804650 809560 2846000 1270000 1576000 2748100 1121100 1627000 4175300 1834100 2341300 0 0 0 119730 40739 78995 5403 2713 5628 27330;27331;27332;27333;27334 27464;27465;27466;27467;27468 27466 5 DVCTELLPLIKPQGR IQAEVTMKTNFFGTRDVCTELLPLIKPQGR DVCTELLPLIKPQGRVVNVSSIMSVRALKS R D V G R V 0 1 0 1 1 1 1 1 0 1 3 1 0 0 2 0 1 0 0 1 0 0 15 1 1737.9447 P16152 P16152 120 134 CBR1 Carbonyl reductase [NADPH] 1 yes yes 3 0.027569 19.323 By MS/MS 2 1.105 1.0344 32.158 2 Median NaN NaN NaN 0 0 Median 1.105 1.0344 32.158 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 985720 512310 473400 0 0 0 985720 512310 473400 0 0 0 0 0 0 0 0 0 0 0 0 5404 2025 5629 27335;27336 27469 27469 1 DVDAAYMNK NKRTTAENEFVMLKKDVDAAYMNKVELEAK FVMLKKDVDAAYMNKVELEAKVDALMDEIN K D V N K V 2 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1025.4488 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;H0YIN9;CON__P48668;P48668;CON__Q14CN4-1;CON__Q6IME9;Q14CN4 CON__P13647 278 286 KRT6A;KRT5;KRT6C;KRT72 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 72 no no 2 0.0031734 85.212 By MS/MS By MS/MS By MS/MS 1 1 1 0.13505 0.1305 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.13505 0.1305 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3766300 3642400 123880 0 0 0 0 0 0 0 0 0 2595500 2471700 123880 0 0 0 1170800 1170800 0 + 5405 757;741;748;766;771 5630 27337;27338;27339 27470;27471;27472 27470 3 DVDAAYMNKVELEAK NKRTTAENEFVMLKKDVDAAYMNKVELEAK DVDAAYMNKVELEAKVDALMDEINFMKMFF K D V A K V 3 0 1 2 0 0 2 0 0 0 1 2 1 0 0 0 0 0 1 2 0 0 15 1 1694.8185 CON__P13647;P13647;H0YIN9 CON__P13647 278 292 KRT5 Keratin, type II cytoskeletal 5 no no 2;3 3.7459E-25 152.4 By MS/MS By MS/MS By MS/MS 2 1 1 0.12181 0.13131 64.853 4 Median 0.11839 0.129 4.2249 2 2 Median NaN NaN NaN 0 0 Median 0.41575 0.4724 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.12164 0.12974 NaN 1 1 Median NaN NaN NaN 0 0 Median 26342000 23419000 2922600 19838000 18175000 1663000 0 0 0 3567600 2592200 975440 0 0 0 2936000 2651800 284240 0 0 0 + 5406 757 5631 27340;27341;27342;27343 27473;27474;27475;27476 27474 4 DVDAAYMNKVELQAK NKRTAAENEFVTLKKDVDAAYMNKVELQAK DVDAAYMNKVELQAKADTLTDEINFLRALY K D V A K A 3 0 1 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 1 2 0 0 15 1 1693.8345 CON__P02538;P02538;CON__P04259;CON__P48668;P48668;CON__Q14CN4-1;CON__Q6IME9;Q14CN4 CON__P02538 273 287 KRT6A;KRT6C;KRT72 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 72 no no 2;3 3.84E-09 110.66 By MS/MS By MS/MS 1 2 0.19129 0.21651 82.741 3 Median 0.23026 0.25091 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.097108 0.11003 95.719 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42062000 34962000 7100400 8610900 7029000 1581900 0 0 0 33452000 27933000 5518600 0 0 0 0 0 0 0 0 0 + 5407 741;748;766;771 5632 27344;27345;27346 27477;27478;27479 27477 3 DVDASPSPLSVQDLK EEDKVELPPAELVQRDVDASPSPLSVQDLK DVDASPSPLSVQDLKGLGYEKGKPVGLVGV R D V L K G 1 0 0 3 0 1 0 0 0 0 2 1 0 0 2 3 0 0 0 2 0 0 15 0 1569.7886 Q8IWZ8 Q8IWZ8 405 419 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 2 0.00014819 77.64 By MS/MS By matching 1 1 0.64177 0.61005 7.3029 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61803 0.64238 NaN 1 0 Median 0.66641 0.57934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7603200 4357300 3245900 0 0 0 0 0 0 6420100 3706700 2713400 1183100 650580 532500 0 0 0 0 0 0 5408 3330 5633 27347;27348 27480 27480 1 DVDEAHYAYSFK ERAKLNITPTKKGRKDVDEAHYAYSFKYLK GRKDVDEAHYAYSFKYLKNKPVKELRDDQF K D V F K Y 2 0 0 2 0 0 1 0 1 0 0 1 0 1 0 1 0 0 2 1 0 0 12 0 1443.6307 Q7KZ85 Q7KZ85 627 638 SUPT6H Transcription elongation factor SPT6 yes yes 2;3 0.0092063 37.191 By matching By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1.1279 1.1294 14.392 7 Median 1.405 1.3449 NaN 1 0 Median 1.1279 0.98948 NaN 1 0 Median 1.1028 1.2277 8.2044 2 0 Median 1.0645 0.96643 9.263 2 0 Median 1.0774 1.1294 NaN 1 0 Median NaN NaN NaN 0 0 Median 17736000 9326300 8409800 2950900 1249800 1701100 1416700 677650 739010 10652000 6127800 4524700 1528800 698630 830200 1187300 572420 614880 0 0 0 5409 3213 5634 27349;27350;27351;27352;27353;27354;27355 27481;27482 27481 2 DVDEAYMNK NKRTEMENEFVLIKKDVDEAYMNKVELESR FVLIKKDVDEAYMNKVELESRLEGLTDEIN K D V N K V 1 0 1 2 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1083.4543 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552 P05787 199 207 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 4 4 1.2104 1.1032 15.303 19 Median 0.99139 0.9178 NaN 1 0 Median 1.2744 1.1032 15.97 3 0 Median 1.1524 1.1113 7.7442 3 0 Median 1.2179 1.0653 11.712 4 0 Median 1.3277 1.3284 6.6712 4 0 Median 1.1466 0.94093 4.0776 4 0 Median 231720000 100980000 130750000 13623000 6160300 7462600 37573000 15785000 21787000 66951000 30321000 36630000 39126000 17044000 22082000 51533000 21362000 30171000 22918000 10304000 12615000 + 5410 750;792 5635;5636 27356;27357;27358;27359;27360;27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372;27373;27374 27483;27484;27485;27486;27487;27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505 27495 269;296 23 DVDEAYMNKVELESR NKRTEMENEFVLIKKDVDEAYMNKVELESR DVDEAYMNKVELESRLEGLTDEINFLRQLY K D V S R L 1 1 1 2 0 0 3 0 0 0 1 1 1 0 0 1 0 0 1 2 0 0 15 1 1796.8251 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 199 213 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.0263E-25 195.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 11 9 7 9 1.2251 1.2337 21.129 43 Median 1.0352 1.0293 29.049 4 0 Median 1.2534 1.1457 30.019 3 1 Median 1.173 1.2838 24.976 11 4 Median 1.4075 1.3416 19.194 9 1 Median 1.2913 1.3129 8.1127 7 0 Median 1.125 1.0024 9.4975 9 0 Median 1025300000 447540000 577730000 83400000 39638000 43762000 7183700 3762000 3421700 401190000 180010000 221180000 102490000 40927000 61561000 346670000 145600000 201060000 84333000 37594000 46739000 + 5411 750 5637;5638 27375;27376;27377;27378;27379;27380;27381;27382;27383;27384;27385;27386;27387;27388;27389;27390;27391;27392;27393;27394;27395;27396;27397;27398;27399;27400;27401;27402;27403;27404;27405;27406;27407;27408;27409;27410;27411;27412;27413;27414;27415;27416;27417 27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544;27545;27546;27547;27548;27549;27550;27551;27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564;27565;27566;27567 27531 269 62 DVDEIEAWISEK RSKLGESQTLQQFSRDVDEIEAWISEKLQT FSRDVDEIEAWISEKLQTASDESYKDPTNI R D V E K L 1 0 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 1 0 1 0 0 12 0 1432.6722 A0A0D9SF54;Q13813 Q13813 1559 1570 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.028681 28.958 By MS/MS By matching By MS/MS By matching 1 2 2 1 1.3115 1.2081 30.933 6 Median 2.3989 2.2542 NaN 1 0 Median 1.3115 1.1487 5.2744 2 0 Median 0.9905 1.0804 17.651 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8601 1.6114 NaN 1 0 Median 13768000 5822100 7945500 1638300 537110 1101200 6884200 2869400 4014800 5108100 2371400 2736700 0 0 0 0 0 0 136890 44084 92809 5412 264;2838 5639 27418;27419;27420;27421;27422;27423 27568;27569 27568 2 DVDETGITVASLER SVSVNDIDLSLYIPRDVDETGITVASLERF RDVDETGITVASLERFSTYTSDKDENKLSE R D V E R F 1 1 0 2 0 0 2 1 0 1 1 0 0 0 0 1 2 0 0 2 0 0 14 0 1503.7417 Q8WU90;H7C466 Q8WU90 341 354 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 2 5.5438E-07 146.16 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.0731 0.95558 7.639 4 Median NaN NaN NaN 0 0 Median 1.0654 0.92901 NaN 1 0 Median 0.99371 0.99093 12.082 2 0 Median 1.1466 0.9829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19765000 9387100 10378000 0 0 0 1031500 489820 541660 14445000 6824500 7620200 4289000 2072800 2216200 0 0 0 0 0 0 5413 3485 5640 27424;27425;27426;27427;27428 27570;27571;27572;27573;27574 27570 5 DVDFEGTDEPIFGK GKLQSESTNNGKNKRDVDFEGTDEPIFGKK RDVDFEGTDEPIFGKKPRIEESITEDLSLA R D V G K K 0 0 0 3 0 0 2 2 0 1 0 1 0 2 1 0 1 0 0 1 0 0 14 0 1567.7042 P42285;H0Y8U3 P42285 65 78 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.00021536 77.379 By MS/MS 2 0.2494 0.26824 180.62 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2494 0.26824 180.62 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32871000 26387000 6484200 0 0 0 0 0 0 32871000 26387000 6484200 0 0 0 0 0 0 0 0 0 5414 2309 5641 27429;27430 27575;27576;27577 27576 3 DVDFELIK IAVNAVLTVADMERRDVDFELIKVEGKVGG VADMERRDVDFELIKVEGKVGGRLEDTKLI R D V I K V 0 0 0 2 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 977.50696 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 203 210 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.026169 42.109 By MS/MS By matching By MS/MS By matching By matching 1 2 1 2 1 1.1414 1.0055 17.681 7 Median 1.1414 1.0764 NaN 1 0 Median 1.1495 0.97608 4.193 2 0 Median 1.2594 1.2534 NaN 1 0 Median 1.1582 1.0089 10.274 2 0 Median NaN NaN NaN 0 0 Median 0.83187 0.70894 NaN 1 0 Median 35990000 16309000 19681000 9848800 4456400 5392300 19205000 8655300 10550000 6209600 2811400 3398200 285210 119080 166130 0 0 0 441080 266990 174100 5415 2364 5642 27431;27432;27433;27434;27435;27436;27437 27578;27579;27580 27578 3 DVDFELIKVEGK IAVNAVLTVADMERRDVDFELIKVEGKVGG ERRDVDFELIKVEGKVGGRLEDTKLIKGVI R D V G K V 0 0 0 2 0 0 2 1 0 1 1 2 0 1 0 0 0 0 0 2 0 0 12 1 1390.7344 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 203 214 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 2.8322E-05 110.39 By MS/MS By matching By matching 3 1 1 1.2812 1.2001 23.267 5 Median 1.197 1.1157 12.028 3 2 Median 1.2812 1.2001 NaN 1 0 Median 1.7142 1.8055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84114000 37550000 46563000 79598000 35492000 44105000 3348200 1586600 1761700 1168000 471650 696330 0 0 0 0 0 0 0 0 0 5416 2364 5643 27438;27439;27440;27441;27442 27581;27582;27583;27584 27583 4 DVDGAYMTK NKRTNAENEFVTIKKDVDGAYMTKVDLQAK FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K D V T K V 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 0 998.4379 P04264;CON__P04264 P04264 290 298 KRT1 Keratin, type II cytoskeletal 1 yes no 1;2 0.00053789 104.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 5 9 5 2 0.023921 0.023208 90.791 29 Median 0.021823 0.020825 98.205 4 4 Median 0.0334 0.028184 86.769 5 5 Median 0.041362 0.042163 38.94 4 4 Median 0.021852 0.018615 58.268 9 9 Median 0.011455 0.012391 151.76 5 5 Median 0.058643 0.048553 83.459 2 2 Median 466280000 455530000 10753000 65187000 63689000 1497600 53125000 51536000 1588700 41804000 40324000 1479900 135670000 131900000 3770400 159690000 157510000 2179600 10809000 10572000 236870 + 5417 1848 5644 27443;27444;27445;27446;27447;27448;27449;27450;27451;27452;27453;27454;27455;27456;27457;27458;27459;27460;27461;27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477 27585;27586;27587;27588;27589;27590;27591;27592;27593;27594;27595;27596;27597;27598;27599;27600;27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613;27614;27615;27616;27617;27618;27619 27609 35 DVDGFHVINVGR HIDERRICNAVSPDKDVDGFHVINVGRMCL PDKDVDGFHVINVGRMCLDQYSMLPATPWG K D V G R M 0 1 1 2 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 3 0 0 12 0 1326.668 P13995;B8ZZU9 P13995 153 164 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 3 0.028558 21.23 By MS/MS By matching 1 1 1.2964 1.1774 4.8559 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2421 1.2185 NaN 1 0 Median 1.3532 1.1376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2844100 1138000 1706100 0 0 0 0 0 0 2494400 998600 1495800 349700 139350 210340 0 0 0 0 0 0 5418 2000 5645 27478;27479 27620 27620 1 DVDGLTSINAGR SINTEEVINAIAPEKDVDGLTSINAGRLAR PEKDVDGLTSINAGRLARGDLNDCFIPCTP K D V G R L 1 1 1 2 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1216.6048 P11586 P11586 123 134 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS 1 2 1 0.9805 0.94181 8.6087 4 Median 0.86048 0.82888 NaN 1 0 Median 1.1467 0.97555 6.2734 2 0 Median 0.89273 0.95047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34345000 16583000 17762000 12685000 7069700 5615700 14852000 6684300 8167800 6807700 2828900 3978800 0 0 0 0 0 0 0 0 0 5419 1968 5646 27480;27481;27482;27483 27621;27622;27623;27624;27625;27626 27621 6 DVDIIDHHDNTYTVK LDVQFSGLTKGDAVRDVDIIDHHDNTYTVK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY R D V V K Y 0 0 1 4 0 0 0 0 2 2 0 1 0 0 0 0 2 0 1 2 0 0 15 0 1783.8377 P21333;Q60FE5;A0A087WWY3 P21333 922 936 FLNA Filamin-A no no 2;3;4 1.035E-26 200.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 4 4 2 1.0857 1.1018 19.046 26 Median 1.1258 1.1101 9.516 8 0 Median 0.99573 0.8868 10.079 8 0 Median 1.0571 1.1636 12.213 4 0 Median 1.2219 1.1087 25.551 4 0 Median 1.4566 1.5307 13.834 2 0 Median NaN NaN NaN 0 0 Median 1078200000 515340000 562870000 378670000 173480000 205190000 532690000 261580000 271110000 138570000 67946000 70628000 17958000 7755100 10203000 10302000 4572400 5729600 0 0 0 5420 2088;3120 5647 27484;27485;27486;27487;27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509 27627;27628;27629;27630;27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658;27659;27660;27661;27662;27663;27664;27665;27666 27633 40 DVDKFGNEITQLAR KESSSEQYVPDVFYKDVDKFGNEITQLARP KDVDKFGNEITQLARPLPVEYLIIDITTTF K D V A R P 1 1 1 2 0 1 1 1 0 1 1 1 0 1 0 0 1 0 0 1 0 0 14 1 1604.8158 Q8TAT6 Q8TAT6 428 441 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 3 0.0054568 29.355 By MS/MS 1 1.0823 1.1487 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0823 1.1487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4004200 1695300 2308900 0 0 0 0 0 0 4004200 1695300 2308900 0 0 0 0 0 0 0 0 0 5421 3456 5648 27510 27667 27667 1 DVDLEFLAK VAILKANLRKSPVAKDVDLEFLAKMTNGFS KSPVAKDVDLEFLAKMTNGFSGADLTEICQ K D V A K M 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 P55072 P55072 669 677 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0050174 58.917 By MS/MS By matching By matching By MS/MS 2 1 1 1 1.2091 1.113 9.1073 5 Median 1.1616 1.1033 1.2377 2 0 Median 1.2091 1.0597 NaN 1 0 Median 1.2223 1.2716 NaN 1 0 Median 1.4807 1.2906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84254000 37576000 46678000 15683000 6848200 8835300 66822000 29943000 36880000 1203400 534010 669410 544740 251230 293510 0 0 0 0 0 0 5422 2494 5649 27511;27512;27513;27514;27515 27668;27669;27670;27671 27668 4 DVDLTLPGWGEWGGVGLKPSAK FLKEKREAVEASKPKDVDLTLPGWGEWGGV GWGEWGGVGLKPSAKKRRRFLIKAPEGPPR K D V A K K 1 0 0 2 0 0 1 5 0 0 3 2 0 0 2 1 1 2 0 2 0 0 22 1 2281.1743 Q9BVJ6;Q5TAP6 Q9BVJ6 623 644 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 0.070204 7.3604 By MS/MS 1 0.71361 0.79803 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71361 0.79803 NaN 1 0 Median NaN NaN NaN 0 0 Median 710840 398450 312400 0 0 0 0 0 0 0 0 0 0 0 0 710840 398450 312400 0 0 0 5423 3855 5650 27516 27672 27672 1 DVDNAYMIK NKRTAAENDFVTLKKDVDNAYMIKVELQSK FVTLKKDVDNAYMIKVELQSKVDLLNQEIE K D V I K V 1 0 1 2 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1067.4957 CON__P35908;CON__P35908v2;P35908 CON__P35908 294 302 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00045508 97.093 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 8 8 14 7 1 0.037583 0.035041 88.905 42 Median 0.047085 0.043602 28.09 7 7 Median 0.039628 0.033624 73.625 8 8 Median 0.049912 0.046917 102.42 7 7 Median 0.027468 0.023376 118.63 13 13 Median 0.044808 0.045317 61.926 6 6 Median 0.038677 0.033129 NaN 1 1 Median 644920000 617740000 27174000 153320000 148020000 5300100 85487000 81697000 3790700 107860000 100200000 7661200 160770000 154730000 6036000 131080000 126950000 4130400 6391500 6136200 255360 + 5424 764;765 5651;5652 27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530;27531;27532;27533;27534;27535;27536;27537;27538;27539;27540;27541;27542;27543;27544;27545;27546;27547;27548;27549;27550;27551;27552;27553;27554;27555;27556;27557;27558;27559;27560;27561;27562;27563;27564 27673;27674;27675;27676;27677;27678;27679;27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710;27711;27712;27713;27714;27715;27716;27717;27718;27719;27720;27721;27722;27723 27696 284 51 DVDREDRFR EENDKDPERERDRERDVDREDRFRRPRDEG ERDRERDVDREDRFRRPRDEGGWRRGPAEE R D V F R R 0 3 0 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 9 2 1206.5741 Q14152 Q14152 1232 1240 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.051885 19.271 By MS/MS By matching 1 1 1.1319 1.2765 22.907 2 Median 0.974 1.0856 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3154 1.5009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3047200 1420800 1626400 2724800 1267800 1457000 0 0 0 322470 153020 169450 0 0 0 0 0 0 0 0 0 5425 2860 5653 27565;27566 27724 27724 1 DVDTYYLSNLVK GLSIIPARFTRVLPRDVDTYYLSNLVKWFI LPRDVDTYYLSNLVKWFIGTFTVNAELSAS R D V V K W 0 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 0 2 2 0 0 12 0 1428.7137 Q01831 Q01831 248 259 XPC DNA repair protein complementing XP-C cells yes yes 2 0.001303 54.608 By MS/MS By matching By matching 1 1 2 1.0819 1.0923 12.217 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91856 0.99552 NaN 1 0 Median 1.5033 1.3189 NaN 1 0 Median 1.0819 1.0923 5.4101 2 0 Median NaN NaN NaN 0 0 Median 6170300 3028500 3141700 0 0 0 0 0 0 3851800 1982400 1869400 126770 40967 85803 2191700 1005200 1186500 0 0 0 5426 2693 5654 27567;27568;27569;27570 27725 27725 1 DVDVYSQILR SEMVPSCPFIYIIRKDVDVYSQILRKLFNE YIIRKDVDVYSQILRKLFNESHGIFLGLQR K D V L R K 0 1 0 2 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 2 0 0 10 0 1206.6245 Q9BW27;J3KT10;J3KSH3;J3KRC0 Q9BW27 60 69 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.00037009 81.594 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.5191 1.4704 31.745 4 Median NaN NaN NaN 0 0 Median 1.1205 0.96626 NaN 1 0 Median 1.3865 1.4098 NaN 1 0 Median 2.4942 2.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6643 1.5336 NaN 1 0 Median 16308000 6688100 9619800 0 0 0 2124900 999940 1125000 13026000 5251800 7774300 803240 253070 550180 0 0 0 353700 183330 170380 5427 3861 5655 27571;27572;27573;27574 27726;27727;27728;27729 27727 4 DVDYSDALTEK EEEEKIFGRGSRQRRDVDYSDALTEKQWLR RQRRDVDYSDALTEKQWLRAIEDGNLEEME R D V E K Q 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1254.5616 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6;A0A1W2PS06 P51531 1313 1323 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00062319 90.108 By MS/MS 1 0.6251 0.68901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6251 0.68901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16707000 9159700 7547100 0 0 0 0 0 0 16707000 9159700 7547100 0 0 0 0 0 0 0 0 0 5428 2433 5656 27575 27730 27730 1 DVEDEETWIR KQKLADSLRLQQLFRDVEDEETWIREKEPI QQLFRDVEDEETWIREKEPIAASTNRGKDL R D V I R E 0 1 0 2 0 0 3 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 10 0 1290.5728 A0A0D9SF54;Q13813 Q13813 792 801 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 5.3706E-06 155.1 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 1 1.1336 0.93355 29.485 9 Median NaN NaN NaN 0 0 Median 1.2757 1.0703 34.449 3 0 Median 0.68451 0.74898 31.153 2 0 Median 1.0858 0.94743 4.467 2 0 Median 1.2226 1.2844 NaN 1 0 Median 1.1031 0.90328 NaN 1 0 Median 54921000 26677000 28244000 0 0 0 21471000 9522100 11949000 27936000 14563000 13373000 1420400 644960 775490 3307400 1592200 1715200 786030 354850 431180 5429 264;2838 5657 27576;27577;27578;27579;27580;27581;27582;27583;27584 27731;27732;27733;27734;27735 27731 5 DVEDEILWVGER KHNLLASKEIHQFNRDVEDEILWVGERMPL FNRDVEDEILWVGERMPLATSTDHGHNLQT R D V E R M 0 1 0 2 0 0 3 1 0 1 1 0 0 0 0 0 0 1 0 2 0 0 12 0 1458.6991 Q01082;A0A087WUZ3 Q01082 1493 1504 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.9664E-06 114.83 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.0391 0.92548 21.377 6 Median 1.4622 1.4594 NaN 1 1 Median 1.1386 0.97078 10.502 2 0 Median 0.86249 0.95032 NaN 1 0 Median 1.0243 0.89526 NaN 1 0 Median 0.76508 0.78408 NaN 1 0 Median NaN NaN NaN 0 0 Median 16469000 7778600 8689900 2236000 776530 1459400 8211100 3953400 4257600 5135700 2602000 2533800 236700 116050 120640 649130 330620 318510 0 0 0 5430 2681 5658 27585;27586;27587;27588;27589;27590 27736;27737;27738;27739;27740;27741 27738 6 DVEDFLSPLLGK TVIRKVEGDIWALQKDVEDFLSPLLGKTPV LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI K D V G K T 0 0 0 2 0 0 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 12 0 1331.6973 Q13405;H0YDP7 Q13405 123 134 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.0011423 56.563 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.9009 0.81286 18.207 4 Median 0.77737 0.73298 NaN 1 0 Median 1.2239 1.0655 NaN 1 0 Median 0.91041 0.90146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89148 0.7303 NaN 1 0 Median 4160600 2053800 2106800 611570 329900 281670 947740 430820 516920 2371700 1209700 1161900 0 0 0 0 0 0 229620 83326 146290 5431 2810 5659 27591;27592;27593;27594 27742;27743;27744;27745;27746 27745 5 DVEDMFSR ANLYISGLPRTMTQKDVEDMFSRFGRIINS PRTMTQKDVEDMFSRFGRIINSRVLVDQTT K D V S R F 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 8 0 997.4175 Q15717;M0QZR9;M0R055 Q15717 121 128 ELAVL1 ELAV-like protein 1 yes no 2 0.0025265 107.59 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.0792 0.96834 10.266 8 Median NaN NaN NaN 0 0 Median 1.1247 0.93776 NaN 1 0 Median 0.90973 0.86729 16.414 2 0 Median 1.1893 1.0182 7.9322 2 0 Median 1.0234 1.0302 4.9624 2 0 Median 1.1772 0.95233 NaN 1 0 Median 54694000 24933000 29762000 0 0 0 4831100 1867200 2963900 17563000 8104300 9458500 1781600 767460 1014100 22640000 10787000 11852000 7879000 3406300 4472700 5432 2964 5660 27595;27596;27597;27598;27599;27600;27601;27602 27747;27748;27749;27750;27751;27752;27753 27750 7 DVEEEKFPTQLSR PGMTIDLFRGKAAVKDVEEEKFPTQLSRHI VKDVEEEKFPTQLSRHIKFGQKSHVECARF K D V S R H 0 1 0 1 0 1 3 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 13 1 1576.7733 Q2TAY7 Q2TAY7 195 207 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2;3 1.1154E-05 107.06 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.7524 1.7102 69.113 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.9147 4.4106 71.967 3 2 Median 2.3432 2.1988 57.023 3 2 Median 0.88037 0.91472 NaN 1 0 Median 1.0924 0.98075 NaN 1 0 Median 112130000 32710000 79416000 0 0 0 0 0 0 65778000 15542000 50235000 42130000 14735000 27395000 3585900 2082200 1503600 632550 350270 282280 5433 3005 5661 27603;27604;27605;27606;27607;27608;27609;27610 27754;27755;27756;27757;27758 27758 4 DVEFEVVGDAPEK YTLLINILHSEDLGKDVEFEVVGDAPEKVG GKDVEFEVVGDAPEKVGPKQAEDAAKSITN K D V E K V 1 0 0 2 0 0 3 1 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1432.6722 Q9UBT2;U3KQ93 Q9UBT2 541 553 UBA2 SUMO-activating enzyme subunit 2 yes no 2 3.3165E-05 91.855 By MS/MS By MS/MS 1 1 0.76387 0.70027 6.2719 2 Median 0.69718 0.66989 NaN 1 0 Median 0.83694 0.73202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8074900 4244200 3830700 3556000 1969200 1586700 4518900 2275000 2244000 0 0 0 0 0 0 0 0 0 0 0 0 5434 4247 5662 27611;27612 27759;27760 27759 2 DVEHYVGSDKEIDVIDVTR DGLGMTLPSPSFTVRDVEHYVGSDKEIDVI YVGSDKEIDVIDVTRQADCKMKLGDFVKYY R D V T R Q 0 1 0 4 0 0 2 1 1 2 0 1 0 0 0 1 1 0 1 4 0 0 19 1 2188.0648 Q9UPP1;H0Y3N9 Q9UPP1 182 200 PHF8 Histone lysine demethylase PHF8 yes no 3 2.7909E-08 77.39 By MS/MS 1 0.88528 1.0027 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88528 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5362500 2377100 2985400 0 0 0 0 0 0 5362500 2377100 2985400 0 0 0 0 0 0 0 0 0 5435 1143 5663 27613 27761 27761 1 DVEQQFK VSGTFLCLDCQTVIRDVEQQFKYTQPNICR LDCQTVIRDVEQQFKYTQPNICRNPVCANR R D V F K Y 0 0 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 7 0 892.42905 Q14566 Q14566 167 173 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.010361 82.263 By MS/MS 1 1.1017 0.96306 NaN 1 Median NaN NaN NaN 0 0 Median 1.1017 0.96306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5340400 2367500 2972900 0 0 0 5340400 2367500 2972900 0 0 0 0 0 0 0 0 0 0 0 0 5436 2881 5664 27614 27762 27762 1 DVESYIHR DIPEVDLVIQSSPPKDVESYIHRSGRTGRA IQSSPPKDVESYIHRSGRTGRAGRTGVCIC K D V H R S 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 1017.488 Q9NR30 Q9NR30 517 524 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0018402 128.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1.367 1.2691 16.16 5 Median NaN NaN NaN 0 0 Median 1.2578 1.0869 NaN 1 0 Median 1.4248 1.5119 NaN 1 0 Median 1.4725 1.2691 NaN 1 1 Median 1.367 1.4269 NaN 1 1 Median 1.2626 1.0479 NaN 1 0 Median 36729000 15788000 20941000 0 0 0 7937700 3533200 4404500 12477000 5210000 7267400 7151100 2786400 4364700 5143900 2502800 2641100 4019000 1755800 2263300 5437 4076 5665 27615;27616;27617;27618;27619;27620;27621 27763;27764;27765;27766;27767;27768;27769;27770 27770 8 DVFAQVR IGAVLAHKGYFREARDVFAQVREATADISD KGYFREARDVFAQVREATADISDVWLNLAH R D V V R E 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 833.43955 Q6PD62 Q6PD62 668 674 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.044111 43.066 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.1826 1.0115 19.648 5 Median 0.99306 0.98462 NaN 1 0 Median 1.1826 1.0115 NaN 1 0 Median 1.037 1.1236 37.411 2 0 Median 1.2521 1.0669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11181000 5320400 5860800 1878500 888470 990020 2424500 1161200 1263300 5394300 2623100 2771200 1483900 647620 836300 0 0 0 0 0 0 5438 3168 5666 27622;27623;27624;27625;27626 27771;27772;27773 27771 3 DVFAVYGIAVDPR YGIEAALRVIEKEIKDVFAVYGIAVDPRHL IKDVFAVYGIAVDPRHLSLVADYMCFEGVY K D V P R H 2 1 0 2 0 0 0 1 0 1 0 0 0 1 1 0 0 0 1 3 0 0 13 0 1420.7351 O95602;B9ZVN9 O95602 1627 1639 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.076979 35.224 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3518700 0 3518700 0 0 0 3518700 0 3518700 0 0 0 0 0 0 0 0 0 0 0 0 5439 1781 5667 27627 27774 27774 1 DVFEAFYKK MLDKIMIIFRFIYGKDVFEAFYKKDLAKRL RFIYGKDVFEAFYKKDLAKRLLVGKSASVD K D V K K D 1 0 0 1 0 0 1 0 0 0 0 2 0 2 0 0 0 0 1 1 0 0 9 1 1145.5757 Q13620;K4DI93;Q13619;A0A0A0MR50 Q13620 601 609 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 2 0.0057015 61.999 By MS/MS By matching By matching 2 1 1 1.2811 1.2842 27.26 4 Median 1.3867 1.3617 21.134 2 0 Median 1.0096 0.84614 NaN 1 0 Median 1.4422 1.4064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18398000 8072500 10325000 13041000 5503300 7538000 4206100 2097700 2108500 1150500 471510 678970 0 0 0 0 0 0 0 0 0 5440 1358;2832 5668 27628;27629;27630;27631 27775 27775 1 DVFERPSAK AQNTKFFKQKAAGVRDVFERPSAKKRKTT_ KAAGVRDVFERPSAKKRKTT__________ R D V A K K 1 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 9 1 1047.5349 P55081 P55081 426 434 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.031522 53.878 By MS/MS 1 0.92989 0.95567 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92989 0.95567 NaN 1 0 Median NaN NaN NaN 0 0 Median 6711600 3124100 3587400 0 0 0 0 0 0 0 0 0 0 0 0 6711600 3124100 3587400 0 0 0 5441 2495 5669 27632 27776;27777 27777 2 DVFFYQADDEHYIPR EGIVEEFATEGTDRKDVFFYQADDEHYIPR DVFFYQADDEHYIPRAVLLDLEPRVIHSIL K D V P R A 1 1 0 3 0 1 1 0 1 1 0 0 0 2 1 0 0 0 2 1 0 0 15 0 1913.8584 P23258;Q9NRH3;K7EIS0;K7EKE5 P23258 49 63 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 3 8.163E-05 67.93 By MS/MS By matching 2 1 1.0164 1.001 6.7868 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91037 0.93709 9.3308 2 0 Median 1.1073 0.96326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16618000 8541000 8077400 0 0 0 0 0 0 13937000 7300300 6636400 2681500 1240600 1440900 0 0 0 0 0 0 5442 2108 5670 27633;27634;27635 27778;27779 27779 2 DVFGSNSNPYMGTR MRTEEDKKKVIAVFKDVFGSNSNPYMGTRL KDVFGSNSNPYMGTRLFRITPYDVQLGYSV K D V T R L 0 1 2 1 0 0 0 2 0 0 0 0 1 1 1 2 1 0 1 1 0 0 14 0 1543.6725 Q9NU22 Q9NU22 1996 2009 MDN1 Midasin yes yes 2 3.5188E-12 180.88 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0411 0.9659 16.257 6 Median NaN NaN NaN 0 0 Median 1.2617 1.0674 NaN 1 0 Median 0.89417 0.95344 10.458 2 0 Median 0.93076 0.80954 24.779 2 0 Median NaN NaN NaN 0 0 Median 1.1797 0.96723 NaN 1 0 Median 27546000 14104000 13442000 0 0 0 1443200 624930 818290 24435000 12678000 11757000 1522700 742970 779770 0 0 0 145370 58343 87024 5443 4112 5671;5672 27636;27637;27638;27639;27640;27641 27780;27781;27782;27783;27784;27785 27783 1879 6 DVFISAAER EHVPLSLDRAMRLVKDVFISAAERDVYTGD AMRLVKDVFISAAERDVYTGDALRICIVTK K D V E R D 2 1 0 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1006.5084 P20618 P20618 205 213 PSMB1 Proteasome subunit beta type-1 yes yes 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.177 1.003 6.9069 6 Median 1.0001 0.95108 NaN 1 0 Median 1.1952 1.003 0.82159 2 0 Median 1.1956 1.149 NaN 1 0 Median 1.1615 0.96305 NaN 1 1 Median 0.88995 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median 77438000 36794000 40644000 46743000 22988000 23755000 18216000 8488000 9727900 7858400 3278500 4580000 3433000 1443200 1989800 1187400 596500 590880 0 0 0 5444 2081 5673 27642;27643;27644;27645;27646;27647 27786;27787;27788;27789;27790;27791;27792;27793 27787 8 DVFLNGSYNDYVR PRYQEVDRRFSGVRRDVFLNGSYNDYVREF RRDVFLNGSYNDYVREFHNMGPPPPWQGMP R D V V R E 0 1 2 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 2 2 0 0 13 0 1560.7209 Q96MU7;J3QR07;J3KRG5 Q96MU7 582 594 YTHDC1 YTH domain-containing protein 1 yes no 2 5.9879E-07 105.86 By matching By MS/MS 1 1 1.0376 0.96416 6.2513 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.112 0.92247 NaN 1 0 Median 0.9682 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median 5719700 2688300 3031300 0 0 0 0 0 0 0 0 0 166820 86138 80680 5552800 2602200 2950700 0 0 0 5445 1347 5674 27648;27649 27794;27795 27795 2 DVFLPSVDNMK ELTVERTPEEEKLHRDVFLPSVDNMKLPEM KLHRDVFLPSVDNMKLPEMTAPLPPLSGLA R D V M K L 0 0 1 2 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 2 0 0 11 0 1263.6169 Q9H0V9 Q9H0V9 288 298 LMAN2L VIP36-like protein yes yes 2 0.016343 36.395 By MS/MS By MS/MS By matching 1 1 1 0.32839 0.26721 42.528 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.509 0.49128 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.22646 0.21665 NaN 1 0 Median 0.32839 0.26721 NaN 1 0 Median 86408000 59619000 26789000 0 0 0 0 0 0 39832000 25506000 14326000 0 0 0 46072000 33808000 12264000 504090 304270 199820 5446 3931 5675 27650;27651;27652 27796;27797;27798;27799 27797 4 DVFQHSQSR VRNIQDTSDLDAIAKDVFQHSQSRTDDKVI LDAIAKDVFQHSQSRTDDKVIRFKRAIGYY K D V S R T 0 1 0 1 0 2 0 0 1 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 1102.5156 Q9NZB2;A0A0C4DH52 Q9NZB2 305 313 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.027065 51.346 By MS/MS 1 1.1697 1.0318 NaN 1 Median NaN NaN NaN 0 0 Median 1.1697 1.0318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 955100 404820 550280 0 0 0 955100 404820 550280 0 0 0 0 0 0 0 0 0 0 0 0 5447 4186 5676 27653 27800 27800 1 DVFQLKDLEK EEKRTRMMEIFSETKDVFQLKDLEKIAPKE FSETKDVFQLKDLEKIAPKEKGITAMSVKE K D V E K I 0 0 0 2 0 1 1 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 10 1 1233.6605 Q9BWT6;D6RCT6;A0A087WTC6;D6RIA0;D6R9E3 Q9BWT6 25 34 MND1 Meiotic nuclear division protein 1 homolog yes no 3 0.00012885 77.379 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.1649 1.1183 25.092 7 Median 1.0495 1.0106 12.604 2 0 Median 1.1223 0.98249 18.308 2 0 Median 1.1649 1.1776 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4822 1.5319 28.374 2 0 Median NaN NaN NaN 0 0 Median 125320000 59218000 66101000 96667000 46684000 49983000 9917000 4444000 5472900 13014000 5835800 7177900 0 0 0 5721600 2254300 3467300 0 0 0 5448 3875 5677 27654;27655;27656;27657;27658;27659;27660 27801;27802;27803;27804;27805;27806;27807;27808;27809;27810 27802 10 DVFRDPALK RYSVDIPLDKTVVNKDVFRDPALKRKARRE KTVVNKDVFRDPALKRKARREAKVKFEERY K D V L K R 1 1 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 9 1 1059.5713 P61353;K7ELC7 P61353 99 107 RPL27 60S ribosomal protein L27 yes no 2 0.0050287 87.308 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.94247 0.9028 17.508 4 Median 0.82637 0.81338 NaN 1 1 Median 0.98481 0.86924 NaN 1 1 Median 0.90196 0.93765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4333 1.2133 NaN 1 0 Median 42084000 22812000 19272000 17980000 10584000 7395900 15530000 7944400 7586100 6516800 3226100 3290700 0 0 0 0 0 0 2056800 1057400 999390 5449 2557 5678 27661;27662;27663;27664 27811;27812;27813;27814 27813 4 DVFRDPALKR RYSVDIPLDKTVVNKDVFRDPALKRKARRE TVVNKDVFRDPALKRKARREAKVKFEERYK K D V K R K 1 2 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 10 2 1215.6724 P61353;K7ELC7 P61353 99 108 RPL27 60S ribosomal protein L27 yes no 3 0.00011011 101.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1 0.96027 0.99971 17.336 11 Median 0.99042 1.1154 13.937 3 1 Plateau 1.0159 1.0854 5.0531 2 0 Median 0.90164 1.0439 6.1225 2 0 Median 0.96027 0.83259 NaN 1 0 Median 0.64476 0.73071 18.609 2 1 Median 1.2011 1.0459 NaN 1 0 Median 121670000 61529000 60143000 43774000 21993000 21781000 28766000 13610000 15156000 32433000 17589000 14843000 7453600 3549500 3904100 6220100 3532800 2687300 3025800 1254300 1771500 5450 2557 5679 27665;27666;27667;27668;27669;27670;27671;27672;27673;27674;27675 27815;27816;27817;27818;27819;27820;27821;27822;27823;27824;27825;27826;27827;27828;27829;27830;27831 27829 17 DVFSPIGER LSHTDFYEEIQEFVKDVFSPIGERLGWDPK IQEFVKDVFSPIGERLGWDPKPGEGHLDAL K D V E R L 0 1 0 1 0 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1018.5084 E9PLK3;P55786 E9PLK3 677 685 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.017009 42.109 By matching By MS/MS By matching 2 2 2 0.89914 0.86938 13.175 6 Median 0.86956 0.85223 1.8559 2 0 Median 1.1305 0.99288 17.822 2 0 Median 0.84418 0.8805 16.971 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26078000 13752000 12326000 13910000 7223300 6686600 9733400 5235300 4498000 2434900 1293800 1141100 0 0 0 0 0 0 0 0 0 5451 960 5680 27676;27677;27678;27679;27680;27681 27832;27833 27833 2 DVFVYISNSLGK D V G K 0 0 1 1 0 0 0 1 0 1 1 1 0 1 0 2 0 0 1 2 0 0 12 0 1340.6976 REV__P10721 yes yes 2 0.032829 27.115 By MS/MS 1 0.10636 0.088158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10636 0.088158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5224600 4403800 820800 0 0 0 0 0 0 0 0 0 5224600 4403800 820800 0 0 0 0 0 0 + 5452 4535 5681 27682 27834 27834 1 DVGAQILLHSHK KLYDDIDFDIEEFAKDVGAQILLHSHKKDI FAKDVGAQILLHSHKKDILMHRWRYPSLSL K D V H K K 1 0 0 1 0 1 0 1 2 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1316.7201 Q96KP4 Q96KP4 290 301 CNDP2 Cytosolic non-specific dipeptidase yes yes 3 0.00029608 57.175 By MS/MS By MS/MS By matching 1 1 1 1.3332 1.1319 12.505 3 Median 1.1121 1.033 NaN 1 0 Median 1.3332 1.1319 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5216 1.3228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19257000 9299600 9957000 11037000 5661800 5375100 7531800 3410200 4121500 0 0 0 687980 227610 460370 0 0 0 0 0 0 5453 3696 5682 27683;27684;27685 27835;27836;27837;27838 27837 4 DVGAQILLHSHKK KLYDDIDFDIEEFAKDVGAQILLHSHKKDI AKDVGAQILLHSHKKDILMHRWRYPSLSLH K D V K K D 1 0 0 1 0 1 0 1 2 1 2 2 0 0 0 1 0 0 0 1 0 0 13 1 1444.815 Q96KP4 Q96KP4 290 302 CNDP2 Cytosolic non-specific dipeptidase yes yes 3 0.00052529 48.704 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1729 1.1504 8.465 4 Median 1.1264 1.0757 NaN 1 0 Median 1.3106 1.2302 NaN 1 0 Median 1.0442 1.2547 NaN 1 0 Median 1.2212 1.0717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20064000 9586900 10477000 11961000 5838600 6122600 5020200 2476000 2544200 2445800 954060 1491800 636600 318260 318340 0 0 0 0 0 0 5454 3696 5683 27686;27687;27688;27689 27839;27840;27841 27840 3 DVGHNIYILAHQLAR DHGDDEGGDDGVSPKDVGHNIYILAHQLAR DVGHNIYILAHQLARHNKLLQQMLKPGSDP K D V A R H 2 1 1 1 0 1 0 1 2 2 2 0 0 0 0 0 0 0 1 1 0 0 15 0 1718.9216 Q14571 Q14571 2103 2117 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 3 0.00052218 38.511 By MS/MS By matching 1 1 1.0941 1.009 6.4467 2 Median 0.95717 0.96403 NaN 1 0 Median 1.2505 1.056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5979600 3234000 2745600 3845200 2230700 1614500 2134500 1003300 1131200 0 0 0 0 0 0 0 0 0 0 0 0 5455 2882 5684 27690;27691 27842;27843 27843 2 DVGRPNFEEGGPTSVGR WEERGDRRFEKPGRKDVGRPNFEEGGPTSV GRPNFEEGGPTSVGRKHEFIRSESENWRIF K D V G R K 0 2 1 1 0 0 2 4 0 0 0 0 0 1 2 1 1 0 0 2 0 0 17 1 1772.8442 Q6Y7W6;E7ESB6 Q6Y7W6 176 192 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 1.378E-05 61.167 By MS/MS 1 4.678 5.0027 NaN 1 Median 4.678 5.0027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50587000 6221300 44366000 50587000 6221300 44366000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5456 3192 5685 27692 27844 27844 1 DVGRPQPGRENFQNWLK LEQILIQWITTQCRKDVGRPQPGRENFQNW GRPQPGRENFQNWLKDGTVLCELINALYPE K D V L K D 0 2 2 1 0 2 1 2 0 0 1 1 0 1 2 0 0 1 0 1 0 0 17 2 2040.029 P37802;X6RJP6 P37802 41 57 TAGLN2 Transgelin-2 yes no 3 9.5971E-08 92.773 By MS/MS By MS/MS By matching 2 1 1 0.69 0.69729 18.267 4 Median 0.69738 0.75224 14.139 2 0 Median 0.7713 0.71431 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61728 0.5352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47350000 25256000 22094000 43569000 23086000 20483000 3151900 1792600 1359300 0 0 0 629390 377110 252280 0 0 0 0 0 0 5457 2269 5686 27693;27694;27695;27696 27845;27846;27847;27848 27846 4 DVHHEPVYPQPPFSYSDLSR TRSSGSHLVFVPSLRDVHHEPVYPQPPFSY PVYPQPPFSYSDLSREDKKQVQFVSEPCSL R D V S R E 0 1 0 2 0 1 1 0 2 0 1 0 0 1 4 3 0 0 2 2 0 0 20 0 2369.1077 Q14181;A0A3B3ITS5;H0YDR7 Q14181 428 447 POLA2 DNA polymerase alpha subunit B yes no 3 0.058242 7.9922 By MS/MS 1 0.65268 0.54886 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65268 0.54886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625610 349130 276490 0 0 0 0 0 0 0 0 0 625610 349130 276490 0 0 0 0 0 0 5458 2862 5687 27697 27849 27849 1 DVHNIYGLYVHMATADGLR TMLKDAQHYGGWEHRDVHNIYGLYVHMATA IYGLYVHMATADGLRQRSGGMERPFVLARA R D V L R Q 2 1 1 2 0 0 0 2 2 1 2 0 1 0 0 0 1 0 2 2 0 0 19 0 2144.0473 E9PKU7;Q14697;F5H6X6 Q14697 570 588 GANAB Neutral alpha-glucosidase AB no no 2;3 3.0671E-08 71.742 By MS/MS By matching 3 1 1.1737 1.0691 11.015 4 Median 1.0656 1.0267 13.402 3 1 Median 1.298 1.1131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17680000 8395100 9284500 15692000 7481800 8210500 1987400 913320 1074000 0 0 0 0 0 0 0 0 0 0 0 0 5459 2896;951 5688 27698;27699;27700;27701 27850;27851;27852;27853;27854;27855 27850 6 DVHTLLDR DHLERVLEAAAQAARDVHTLLDRVVRQHVR AAAQAARDVHTLLDRVVRQHVREASILLGD R D V D R V 0 1 0 2 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 967.50869 Q9NPD3;E9PI41 Q9NPD3 223 230 EXOSC4 Exosome complex component RRP41 yes no 2 0.0035928 86.794 By MS/MS By matching By MS/MS 1 1 1 1.1395 1.0883 9.9909 3 Median 1.1395 1.0749 NaN 1 0 Median 1.5125 1.2855 NaN 1 0 Median 1.133 1.0883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25129000 11152000 13977000 3774300 1915300 1858900 1535000 586280 948760 19819000 8650200 11169000 0 0 0 0 0 0 0 0 0 5460 4046 5689 27702;27703;27704 27856;27857 27856 2 DVIAQSQSGTGK SAIQQRAIKQIIKGRDVIAQSQSGTGKTAT KGRDVIAQSQSGTGKTATFSISVLQCLDIQ R D V G K T 1 0 0 1 0 2 0 2 0 1 0 1 0 0 0 2 1 0 0 1 0 0 12 0 1189.5939 P38919;I3L3H2 P38919 77 88 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0038153 45.161 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1.2134 1.0706 6.8971 6 Median 1.0948 1.0792 NaN 1 0 Median 1.1962 1.0368 NaN 1 0 Median 1.2308 1.2503 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0907 1.0531 NaN 1 0 Median 1.3073 1.0917 3.8957 2 0 Median 4409900 2025000 2385000 357330 171590 185740 784280 328830 455450 1613500 733570 879900 0 0 0 736830 333660 403170 918040 457300 460740 5461 2278 5690 27705;27706;27707;27708;27709;27710 27858;27859;27860 27859 3 DVIATDKEDVAFK GVLMELQDCALPLLKDVIATDKEDVAFKDL LKDVIATDKEDVAFKDLDVAILVGSMPRRE K D V F K D 2 0 0 3 0 0 1 0 0 1 0 2 0 1 0 0 1 0 0 2 0 0 13 1 1449.7351 P40925;C9JF79;C9JRL4;C9JLV6 P40925 67 79 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase yes no 2;3 3.1324E-06 138.99 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1518 1.0711 12.991 8 Median 0.98384 0.93539 6.9256 2 0 Median 1.2221 1.0996 0.098848 2 0 Median 1.0596 1.1051 8.0305 2 0 Median 1.3662 1.1997 20.439 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175380000 80649000 94732000 32654000 16130000 16524000 104880000 45666000 59215000 35157000 17738000 17419000 2690300 1116000 1574200 0 0 0 0 0 0 5462 2291 5691 27711;27712;27713;27714;27715;27716;27717;27718 27861;27862;27863;27864;27865;27866;27867;27868;27869;27870;27871;27872;27873;27874 27868 14 DVIDEPIIEEPSR PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ QRDVIDEPIIEEPSRLQESVMEASRTNIDE R D V S R L 0 1 0 2 0 0 3 0 0 3 0 0 0 0 2 1 0 0 0 1 0 0 13 0 1510.7515 O60216 O60216 438 450 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 1.5889E-06 154.24 By matching By MS/MS By MS/MS By MS/MS 1 2 2 3 0.76865 0.65441 21.022 7 Median NaN NaN NaN 0 0 Median 1.0717 0.97559 NaN 1 0 Median 0.59152 0.62546 NaN 1 0 Median 0.78474 0.66942 4.3696 2 0 Median 0.65018 0.65441 26.119 3 1 Median NaN NaN NaN 0 0 Median 60930000 36675000 24255000 0 0 0 476330 214590 261740 34428000 20890000 13538000 4787000 2653200 2133700 21240000 12917000 8322100 0 0 0 5463 1603 5692 27719;27720;27721;27722;27723;27724;27725;27726 27875;27876;27877;27878;27879;27880;27881 27880 7 DVIDEPIIEEPSRLQESVMEASR PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ EEPSRLQESVMEASRTNIDESAMPPPPPQG R D V S R T 1 2 0 2 0 1 5 0 0 3 1 0 1 0 2 3 0 0 0 2 0 0 23 1 2641.2905 O60216 O60216 438 460 RAD21 Double-strand-break repair protein rad21 homolog yes yes 3 0.0099733 20.439 By MS/MS 2 0.47626 0.53096 48.567 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47626 0.53096 48.567 2 0 Median NaN NaN NaN 0 0 Median 4510100 2828700 1681400 0 0 0 0 0 0 0 0 0 0 0 0 4510100 2828700 1681400 0 0 0 5464 1603 5693 27727;27728 27882;27883 27883 2 DVIEEYFK SCVVVKDYGKESQAKDVIEEYFKCKK____ GKESQAKDVIEEYFKCKK____________ K D V F K C 0 0 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1041.5019 P25398 P25398 122 129 RPS12 40S ribosomal protein S12 yes yes 2 0.0035231 91.041 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2328 1.0293 10.509 5 Median 1.1403 1.0293 NaN 1 0 Median 1.1413 0.95309 9.0445 2 0 Median 1.2695 1.2024 NaN 1 0 Median 1.2782 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97581000 43016000 54565000 40893000 18143000 22750000 7711600 3393500 4318200 44552000 19591000 24961000 4423900 1887900 2536000 0 0 0 0 0 0 5465 2132 5694 27729;27730;27731;27732;27733 27884;27885;27886;27887;27888;27889;27890;27891;27892;27893 27885 10 DVIGFNMAGLDYLK EKLRETTISKVSQVRDVIGFNMAGLDYLKR RDVIGFNMAGLDYLKRECEAKSEVMFFADA R D V L K R 1 0 1 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 1 0 0 14 0 1554.7752 Q9UNX4 Q9UNX4 893 906 WDR3 WD repeat-containing protein 3 yes yes 2 0.043911 24.855 By MS/MS By matching 1 1 1.4418 1.3708 4.8132 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2746 1.325 NaN 1 0 Median 1.6308 1.4183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1291300 594010 697280 0 0 0 0 0 0 1122000 526070 595940 169280 67937 101340 0 0 0 0 0 0 5466 4351 5695 27734;27735 27894 27894 1 DVIGIAHHPHQNLIATYSEDGLLK TVTGKLERTLTVHEKDVIGIAHHPHQNLIA HQNLIATYSEDGLLKLWKP___________ K D V L K L 2 0 1 2 0 1 1 2 3 3 3 1 0 0 1 1 1 0 1 1 0 0 24 0 2640.366 Q2TAY7 Q2TAY7 486 509 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3;4 2.302E-12 59.324 By MS/MS By matching 4 1 1.0119 0.94616 4.0482 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99331 0.95953 4.0192 4 0 Median 1.0626 0.91982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43759000 21686000 22074000 0 0 0 0 0 0 42845000 21265000 21579000 914860 420220 494640 0 0 0 0 0 0 5467 3005 5696 27736;27737;27738;27739;27740 27895;27896;27897;27898;27899 27895 5 DVIINQEGEYIK PKLIPKVTKTADKHKDVIINQEGEYIKMFM KHKDVIINQEGEYIKMFMRGRPITMFIPSD K D V I K M 0 0 1 1 0 1 2 1 0 3 0 1 0 0 0 0 0 0 1 1 0 0 12 0 1419.7246 Q9HC35 Q9HC35 217 228 EML4 Echinoderm microtubule-associated protein-like 4 yes yes 2 0.0042857 65.347 By MS/MS 2 0.97368 0.81628 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97368 0.81628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1131000 507580 623440 0 0 0 0 0 0 0 0 0 1131000 507580 623440 0 0 0 0 0 0 5468 4024 5697 27741;27742 27900;27901 27900 2 DVKDTILHDNLK FTTAINTENIRLVFRDVKDTILHDNLKQLM VFRDVKDTILHDNLKQLMLQ__________ R D V L K Q 0 0 1 3 0 0 0 0 1 1 2 2 0 0 0 0 1 0 0 1 0 0 12 1 1409.7514 Q14344 Q14344 361 372 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 3 0.038185 20.096 By MS/MS 1 0.94043 0.88 NaN 1 Median 0.94043 0.88 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2806500 1160300 1646300 2806500 1160300 1646300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5469 2875 5698 27743 27902 27902 1 DVKPHNVMIDHEHR LKALDYCHSMGIMHRDVKPHNVMIDHEHRK RDVKPHNVMIDHEHRKLRLIDWGLAEFYHP R D V H R K 0 1 1 2 0 0 1 0 3 1 0 1 1 0 1 0 0 0 0 2 0 0 14 1 1725.8369 P68400;E7EU96;A0A2R8YD58;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYW6 P68400 156 169 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3 0.016316 24.191 By matching By MS/MS By matching 1 1 1 1.0114 1.0371 8.7413 3 Median 1.0114 1.0371 NaN 1 0 Median 1.2278 1.1481 NaN 1 0 Median 0.84943 0.96476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3054700 1449400 1605300 58637 35196 23441 1818800 750920 1067900 1177200 663250 513950 0 0 0 0 0 0 0 0 0 5470 394 5699 27744;27745;27746 27903;27904 27904 2 DVKPHNVMIDHQQK LKALDYCHSKGIMHRDVKPHNVMIDHQQKK RDVKPHNVMIDHQQKKLRLIDWGLAEFYHP R D V Q K K 0 0 1 2 0 2 0 0 2 1 0 2 1 0 1 0 0 0 0 2 0 0 14 1 1687.8464 P19784 P19784 157 170 CSNK2A2 Casein kinase II subunit alpha yes yes 3 0.034684 18.829 By MS/MS By matching 1 2 1.1077 1.0423 2.0895 3 Plateau NaN NaN NaN 0 0 Median 1.1217 1.0194 NaN 1 0 Median 0.98144 1.0525 1.3866 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2005300 988720 1016600 0 0 0 911720 411870 499850 1093600 576850 516730 0 0 0 0 0 0 0 0 0 5471 2069 5700 27747;27748;27749 27905 27905 1 DVKPSNILVNSR KGLTYLREKHKIMHRDVKPSNILVNSRGEI MHRDVKPSNILVNSRGEIKLCDFGVSGQLI R D V S R G 0 1 2 1 0 0 0 0 0 1 1 1 0 0 1 2 0 0 0 2 0 0 12 1 1340.7412 P36507;G5E9C7;Q02750 Q02750 190 201 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 2;3 2.0556E-05 104.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1 0.90095 0.82165 28.4 10 Median 0.77626 0.83191 10.14 3 0 Plateau 0.91026 0.85474 7.3397 2 0 Median 1.0721 1.2199 13.398 2 0 Median 0.92383 0.80811 NaN 1 0 Median 1.5423 1.6811 NaN 1 1 Median 0.87863 0.79135 NaN 1 1 Median 86648000 45365000 41282000 32407000 18526000 13881000 10126000 5306800 4818900 23028000 11482000 11545000 2100000 1126000 973960 12585000 5390300 7195000 6402400 3534300 2868200 5472 2256;2700 5701 27750;27751;27752;27753;27754;27755;27756;27757;27758;27759 27906;27907;27908;27909;27910;27911;27912;27913;27914;27915;27916;27917 27912 12 DVLAANPNR MFMSFLKHKDARPLRDVLAANPNRFITLLL DARPLRDVLAANPNRFITLLLPGGAQTAVR R D V N R F 2 1 2 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 968.50394 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1583 1591 TRRAP Transformation/transcription domain-associated protein yes no 2 0.050756 44.447 By MS/MS 1 0.67276 0.75206 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67276 0.75206 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 671270 358700 312580 0 0 0 0 0 0 671270 358700 312580 0 0 0 0 0 0 0 0 0 5473 991 5702 27760 27918 27918 1 DVLDFYNVPIQDR HVVPNSRLHQMCRVRDVLDFYNVPIQDRSK VRDVLDFYNVPIQDRSKFDELSASNLPPNL R D V D R S 0 1 1 3 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 2 0 0 13 0 1592.7835 Q8N5N7 Q8N5N7 125 137 MRPL50 39S ribosomal protein L50, mitochondrial yes yes 2 0.0014451 53.683 By MS/MS By matching 1 1 0.98518 0.937 11.562 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85083 0.86345 NaN 1 0 Median 1.1408 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1654000 867230 786820 0 0 0 0 0 0 1577100 838220 738890 76943 29009 47934 0 0 0 0 0 0 5474 3384 5703 27761;27762 27919;27920 27920 2 DVLDSVL EDLESVGKGAVHDVKDVLDSVL________ KGAVHDVKDVLDSVL_______________ K D V V L - 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 759.40143 P81605 P81605 104 110 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 1 0.027655 69.39 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7418100 0 0 0 0 0 7418100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5475 2650 5704 27763 27921 27921 1 DVLEAIAETAFK FITHGFTMTTEVPLRDVLEAIAETAFKTSP PLRDVLEAIAETAFKTSPYPVILSFENHVD R D V F K T 3 0 0 1 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1305.6816 Q01970 Q01970 391 402 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.0034893 45.997 By MS/MS 2 1.1435 1.0021 7.5725 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1435 1.0021 7.5725 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 585300 260260 325040 0 0 0 0 0 0 0 0 0 585300 260260 325040 0 0 0 0 0 0 5476 2695 5705 27764;27765 27922;27923 27922 2 DVLEGYNGTIFAYGQTSSGK SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQ YNGTIFAYGQTSSGKTHTMEGKLHDPEGMG K D V G K T 1 0 1 1 0 1 1 4 0 1 1 1 0 1 0 2 2 0 2 1 0 0 20 0 2105.9906 O60282;P33176 P33176 72 91 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 1.0255E-05 48.704 By MS/MS By matching 1 1 1.0563 0.98098 25.872 2 Median 1.1993 1.1779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93031 0.81697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4115500 1862500 2253000 3992700 1797700 2195000 0 0 0 0 0 0 122830 64804 58028 0 0 0 0 0 0 5477 2221;1609 5706 27766;27767 27924 27924 1 DVLETFTVK AGGVEQFISDICPKKDVLETFTVKSCPDAI DICPKKDVLETFTVKSCPDAIKEVFDNKFH K D V V K S 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 2 0 0 9 0 1050.5597 A6NNI4;A0A2R8Y478;G8JLH6;P21926 A6NNI4 102 110 CD9 Tetraspanin;CD9 antigen yes no 2 0.0053299 57.96 By MS/MS By matching 1 1 0.91401 0.83233 3.1821 2 Median 0.86092 0.81381 NaN 1 0 Median 0.97039 0.85127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5404500 3083500 2321000 5137600 2949400 2188100 266970 134060 132900 0 0 0 0 0 0 0 0 0 0 0 0 5478 360 5707 27768;27769 27925 27925 1 DVLEVGELAK NQVIFPVSYNDKFYKDVLEVGELAKLGTKM DKFYKDVLEVGELAKLGTKMLNHVLNICEK K D V A K L 1 0 0 1 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1071.5812 C9J5D1;E7EQ69;Q9GZZ1;C9JZU6 C9J5D1 38 47 NAA50 N-alpha-acetyltransferase 50 yes no 2 0.0074021 61.679 By MS/MS By MS/MS By MS/MS 1 1 2 0.99788 0.93651 11.908 3 Median 0.82678 0.78015 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0187 0.9559 2.8982 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31904000 17750000 14153000 13393000 8553700 4838800 0 0 0 18511000 9196700 9314500 0 0 0 0 0 0 0 0 0 5479 677 5708 27770;27771;27772;27773 27926;27927;27928;27929 27927 4 DVLILGGGDGGILCEIVK TRAIMGSGKEDYTGKDVLILGGGDGGILCE ILGGGDGGILCEIVKLKPKMVTMVEIDQMV K D V V K L 0 0 0 2 1 0 1 5 0 3 3 1 0 0 0 0 0 0 0 2 0 0 18 0 1826.9812 P52788;H7C2R7 P52788 193 210 SMS Spermine synthase yes no 2 2.0874E-14 112.42 By MS/MS 1 0.97838 0.8377 NaN 1 Median NaN NaN NaN 0 0 Median 0.97838 0.8377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4911500 2509400 2402100 0 0 0 4911500 2509400 2402100 0 0 0 0 0 0 0 0 0 0 0 0 5480 2459 5709 27774 27930;27931 27931 2 DVLLDVAYAYGK AISYHLVQKPFSLTKDVLLDVAYAYGKLSF LTKDVLLDVAYAYGKLSFHQTQVSQRLATD K D V G K L 2 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 0 0 2 2 0 0 12 0 1325.6867 Q969Z0;C9IZN7 Q969Z0 293 304 TBRG4 Protein TBRG4 yes no 2 0.00061626 67.563 By MS/MS 1 1.1485 1.1105 NaN 1 Median 1.1485 1.1105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1878400 842460 1035900 1878400 842460 1035900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5481 3591 5710 27775 27932;27933 27933 2 DVLLQVDDER QAACKQVRRTEKKLKDVLLQVDDERRNAEQ EKKLKDVLLQVDDERRNAEQYKDQADKAST K D V E R R 0 1 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1200.5986 P35579 P35579 1846 1855 MYH9 Myosin-9 yes yes 2 0.00063896 72.643 By MS/MS 1 0.93975 0.79923 NaN 1 Median NaN NaN NaN 0 0 Median 0.93975 0.79923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3475600 1630700 1844900 0 0 0 3475600 1630700 1844900 0 0 0 0 0 0 0 0 0 0 0 0 5482 2244 5711 27776 27934 27934 1 DVLLQVDDERR QAACKQVRRTEKKLKDVLLQVDDERRNAEQ KKLKDVLLQVDDERRNAEQYKDQADKASTR K D V R R N 0 2 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 11 1 1356.6997 P35579 P35579 1846 1856 MYH9 Myosin-9 yes yes 2;3 3.5102E-52 232.41 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.91403 0.92302 93.125 7 Median 1.0662 1.1402 4.5932 2 2 Median 0.77018 0.77775 53.143 3 0 Median NaN NaN NaN 0 0 Median 0.14827 0.13427 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.2159 2.2859 NaN 1 0 Median 137830000 68220000 69605000 42121000 19303000 22818000 90168000 44895000 45272000 0 0 0 3837200 3351600 485630 0 0 0 1699200 669870 1029300 5483 2244 5712 27777;27778;27779;27780;27781;27782;27783 27935;27936;27937;27938;27939;27940;27941;27942 27938 8 DVLNDTAPR AQTTMEPHLLEACVRDVLNDTAPRAMAVLE LEACVRDVLNDTAPRAMAVLESLRVIITNF R D V P R A 1 1 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 9 0 999.49852 P47897;A0A1B0GVU9;B4DDN1;H7C0R3 P47897 559 567 QARS Glutamine--tRNA ligase yes no 2 0.0008527 94.302 By matching By MS/MS 1 1 0.78733 0.71831 1.1214 2 Median 0.75271 0.72403 NaN 1 0 Median 0.82355 0.71264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9652900 5499400 4153500 4288900 2381200 1907700 5364000 3118200 2245800 0 0 0 0 0 0 0 0 0 0 0 0 5484 2356 5713 27784;27785 27943;27944 27943 2 DVLSNAHIQNELER NERALRRTLQEDLVKDVLSNAHIQNELERE KDVLSNAHIQNELEREFERMREDREVLRVI K D V E R E 1 1 2 1 0 1 2 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1636.8169 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 941 954 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.0034769 32.275 By MS/MS By matching By matching 1 1 1 1.1972 1.0564 10.038 3 Median NaN NaN NaN 0 0 Median 1.3647 1.1517 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1972 1.0564 NaN 1 0 Median 0.89749 0.94277 NaN 1 0 Median NaN NaN NaN 0 0 Median 6393200 2887300 3505900 0 0 0 2314300 896700 1417600 0 0 0 976320 426000 550320 3102600 1564600 1538000 0 0 0 5485 486 5714 27786;27787;27788 27945 27945 1 DVLSVAFSSDNR LTTGTTTRRFVGHTKDVLSVAFSSDNRQIV HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN K D V N R Q 1 1 1 2 0 0 0 0 0 0 1 0 0 1 0 3 0 0 0 2 0 0 12 0 1308.631 P63244;J3KPE3;D6RHH4;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;D6RFZ9;E9PD14;D6RAU2 P63244 107 118 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 1.2785E-21 197.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 1.1844 1.0194 9.0453 9 Median 1.1967 1.1236 11.842 2 0 Median 1.1846 0.99888 2.8822 2 0 Median 1.1844 1.1494 NaN 1 0 Median 1.2155 0.99684 1.1053 3 0 Median 1.148 1.2227 NaN 1 0 Median NaN NaN NaN 0 0 Median 94913000 42356000 52557000 33825000 15496000 18330000 19077000 8595100 10482000 37408000 16189000 21219000 3209700 1443900 1765800 1392200 631540 760660 0 0 0 5486 2624 5715 27789;27790;27791;27792;27793;27794;27795;27796;27797 27946;27947;27948;27949;27950;27951;27952;27953;27954;27955;27956;27957;27958 27951 13 DVLTIIEKPTGSK SVQGATYEEVSQMVKDVLTIIEKPTGSKQP VKDVLTIIEKPTGSKQPAGCLENQVSAFLE K D V S K Q 0 0 0 1 0 0 1 1 0 2 1 2 0 0 1 1 2 0 0 1 0 0 13 1 1399.7922 CON__Q3SZ57 CON__Q3SZ57 69 81 yes yes 2;3 2.1387E-07 120.06 By MS/MS 3 0.012975 0.013387 NaN 1 Median 0.012975 0.013387 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12495000 12426000 68905 12495000 12426000 68905 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5487 778 5716 27798;27799;27800 27959;27960;27961 27960 3 DVMLENYR EEWDQLYPAQKNLYRDVMLENYRNLVALGY AQKNLYRDVMLENYRNLVALGYQLCKPEVI R D V Y R N 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 8 0 1038.4804 I3L0E3 I3L0E3 46 53 hCG_1984214 no no 2 0.021359 45.718 By matching By MS/MS 1 1 0.96678 0.84273 19.611 2 Median 0.7809 0.73361 NaN 1 0 Median 1.1969 0.96809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3232400 1961800 1270600 2453300 1558100 895150 779100 403660 375430 0 0 0 0 0 0 0 0 0 0 0 0 5488 1268 5717 27801;27802 27962 27962 1 DVMPEVNK ALRNRSNTPILVDGKDVMPEVNKVLDKMKS PILVDGKDVMPEVNKVLDKMKSFCQRVRSG K D V N K V 0 0 1 1 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 2 0 0 8 0 930.44807 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41 P06744 117 124 GPI Glucose-6-phosphate isomerase yes no 2 0.01208 55.676 By MS/MS By MS/MS 1 2 0.83714 0.79109 21.123 3 Median 0.83714 0.80161 NaN 1 0 Median 0.77098 0.66107 25.391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10915000 5844700 5070000 4924400 2636900 2287500 5990400 3207900 2782500 0 0 0 0 0 0 0 0 0 0 0 0 5489 1875 5718 27803;27804;27805 27963;27964;27965;27966 27964 4 DVMQQQLAEYQELLDVK RKMLDAKEQEMTEMRDVMQQQLAEYQELLD MQQQLAEYQELLDVKLALDMEINAYRKLLE R D V V K L 1 0 0 2 0 4 2 0 0 0 3 1 1 0 0 0 0 0 1 2 0 0 17 0 2049.0089 Q03252 Q03252 365 381 LMNB2 Lamin-B2 yes yes 3 0.058945 9.0964 By matching By MS/MS By matching 1 1 1 1.0014 0.92419 18.938 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1723 1.2463 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8973 0.92419 NaN 1 0 Median 1.0014 0.87752 NaN 1 0 Median 2495300 1067200 1428200 0 0 0 0 0 0 512030 200940 311100 0 0 0 1898600 830860 1067800 84672 35375 49297 5490 2709 5719 27806;27807;27808 27967 27967 1 DVNAAIATIK YMACCLLYRGDVVPKDVNAAIATIKTKRSI DVVPKDVNAAIATIKTKRSIQFVDWCPTGF K D V I K T 3 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 10 0 1014.571 Q9BQE3;F5H5D3;A0A1W2PQM2;P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 327 336 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 0.00034968 101.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 8 5 8 6 8 1.2248 1.0706 27.071 43 Median 1.0904 1.0045 22.709 9 0 Median 1.139 0.98197 4.4107 8 0 Median 1.2248 1.1611 19.656 5 0 Median 1.2667 1.0762 18.164 7 0 Median 1.8947 1.9203 18.678 6 1 Median 1.2786 1.0596 4.9935 8 0 Median 2711900000 1214100000 1497800000 1278800000 592790000 686030000 666140000 293310000 372830000 246680000 112380000 134300000 190110000 83500000 106610000 117060000 37434000 79625000 213100000 94700000 118410000 5491 2633;3212;1034 5720 27809;27810;27811;27812;27813;27814;27815;27816;27817;27818;27819;27820;27821;27822;27823;27824;27825;27826;27827;27828;27829;27830;27831;27832;27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848;27849;27850;27851;27852 27968;27969;27970;27971;27972;27973;27974;27975;27976;27977;27978;27979;27980;27981;27982;27983;27984;27985;27986;27987;27988;27989;27990;27991;27992;27993;27994;27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016;28017;28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029 27981 61 DVNAAIATIKTK YMACCLLYRGDVVPKDVNAAIATIKTKRSI VPKDVNAAIATIKTKRSIQFVDWCPTGFKV K D V T K R 3 0 1 1 0 0 0 0 0 2 0 2 0 0 0 0 2 0 0 1 0 0 12 1 1243.7136 Q9BQE3;F5H5D3;A0A1W2PQM2;P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 327 338 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 0.0034139 89.403 By MS/MS 1 0.64168 0.61663 NaN 1 Median 0.64168 0.61663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4369300 2936300 1433000 4369300 2936300 1433000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5492 2633;3212;1034 5721 27853 28030 28030 1 DVNALPETLSDALR SYMEEFPFPYYIILRDVNALPETLSDALRQ RDVNALPETLSDALRQWFELVTASDHP___ R D V L R Q 2 1 1 2 0 0 1 0 0 0 3 0 0 0 1 1 1 0 0 1 0 0 14 0 1512.7784 Q9NU22;M0QXR3 Q9NU22 5571 5584 MDN1 Midasin yes no 2 6.4816E-06 134.13 By MS/MS By MS/MS By MS/MS 1 2 1 1.0614 0.99476 19.998 4 Median 1.1135 1.1284 NaN 1 1 Median 1.0716 1.0524 29.162 2 0 Median 0.83186 0.87698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19041000 9691900 9348700 2312200 1147600 1164700 4440500 2101700 2338900 12288000 6442700 5845200 0 0 0 0 0 0 0 0 0 5493 4112 5722 27854;27855;27856;27857 28031;28032;28033;28034 28032 4 DVNELRQELER AHQFLMDTIFQPFLKDVNELRQELERQLEM PFLKDVNELRQELERQLEMWQPRESGNPEE K D V E R Q 0 2 1 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1399.7056 Q9NU22 Q9NU22 5280 5290 MDN1 Midasin yes yes 3 5.1592E-05 90.685 By MS/MS 1 1.0161 1.1167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0161 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8745100 4057200 4688000 0 0 0 0 0 0 8745100 4057200 4688000 0 0 0 0 0 0 0 0 0 5494 4112 5723 27858 28035 28035 1 DVNGELIAVQR AQETDVRAQIRLQFRDVNGELIAVQRSMVC LQFRDVNGELIAVQRSMVCTQKSKKTEFKT R D V Q R S 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1212.6463 Q92878;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;E9PM98 Q92878 88 98 RAD50 DNA repair protein RAD50 yes no 2 5.3644E-05 153.24 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1555 1.2702 52.326 5 Median 1.1527 1.0879 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1555 1.2702 NaN 1 0 Median 1.4751 1.2981 NaN 1 0 Median 1.2923 1.345 NaN 1 0 Median 0.43961 0.39229 NaN 1 0 Median 42590000 17769000 24821000 6883800 2857600 4026200 0 0 0 24842000 10986000 13856000 4357000 1720400 2636600 6102600 1957200 4145400 404850 247970 156880 5495 3561 5724 27859;27860;27861;27862;27863 28036;28037;28038;28039;28040;28041 28037 6 DVNIPTLEGR NRHKEYERNRHFGLKDVNIPTLEGRILVEL HFGLKDVNIPTLEGRILVELDETSQGLVPE K D V G R I 0 1 1 1 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1112.5826 Q15398;G3V543;G3V4E5 Q15398 49 58 DLGAP5 Disks large-associated protein 5 yes no 2 0.0023475 60.59 By MS/MS 1 1.4391 1.5461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4391 1.5461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3207300 1336600 1870700 0 0 0 0 0 0 3207300 1336600 1870700 0 0 0 0 0 0 0 0 0 5496 2948 5725 27864 28042 28042 1 DVNPGGKEETPGQRPAVTETHQLAELNEK IQEKVATFRLMLLEKDVNPGGKEETPGQRP PAVTETHQLAELNEKKNERLRAAFGISDSY K D V E K K 2 1 2 1 0 2 5 3 1 0 2 2 0 0 3 0 3 0 0 2 0 0 29 2 3143.5483 Q9UQ35;I3L4D8;I3L1I8;I3L182;A0A087X1W1;I3L1C0 Q9UQ35 102 130 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 4 2.912E-05 31.37 By MS/MS 2 0.67287 0.72168 25.027 2 Median 0.67287 0.72168 25.027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14062000 7942500 6119700 14062000 7942500 6119700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5497 4359 5726 27865;27866 28043;28044 28043 2 DVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP K D V V R A 0 1 1 1 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 1133.5465 P39019;M0R2L9;M0QYF7;M0R140 P39019 8 16 RPS19 40S ribosomal protein S19 yes no 2 4.7159E-05 152.63 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2194 1.0865 25.861 6 Median 1.1354 1.0679 NaN 1 0 Median 1.2465 1.0447 7.9824 2 1 Median 1.2465 1.2574 NaN 1 0 Median 1.5685 1.2663 52.689 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 217540000 99815000 117720000 74498000 34915000 39583000 61426000 27190000 34236000 61912000 29352000 32560000 19701000 8358700 11342000 0 0 0 0 0 0 5498 2280 5727 27867;27868;27869;27870;27871;27872 28045;28046;28047;28048;28049;28050;28051;28052;28053;28054;28055 28050 11 DVNSSSPVMLAFK RKHDNFPHNQRREGKDVNSSSPVMLAFKSF GKDVNSSSPVMLAFKSFQQELDARHDKYER K D V F K S 1 0 1 1 0 0 0 0 0 0 1 1 1 1 1 3 0 0 0 2 0 0 13 0 1393.6912 Q99598;C4P0D6;C4P0D8;Q5VVQ1;C4P0D4;Q9NRI2 Q99598 28 40 TSNAX;DISC1;TRAX Translin-associated protein X yes no 2 0.012487 52.79 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5499 3756 5728 27873 28056 28056 1 DVNVNFEK RRDYVFIEFCVEDSKDVNVNFEKSKLTFSC FCVEDSKDVNVNFEKSKLTFSCLGGSDNFK K D V E K S 0 0 2 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 963.46616 Q15185;A0A087WYT3;B4DDC6 Q15185 26 33 PTGES3 Prostaglandin E synthase 3 yes no 2 0.0034493 95.531 By MS/MS By MS/MS 1 1 1.1095 0.99842 15.657 2 Median 1.1807 1.1153 NaN 1 0 Median 1.0427 0.89378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17102000 7767200 9334600 10049000 4432700 5616000 7053100 3334500 3718600 0 0 0 0 0 0 0 0 0 0 0 0 5500 87 5729 27874;27875 28057;28058;28059 28059 3 DVNVVVVEGGPK NAGQLYLTGVVVLHKDVNVVVVEGGPKAQK LHKDVNVVVVEGGPKAQKKFKRLMLHRIKW K D V P K A 0 0 1 1 0 0 1 2 0 0 0 1 0 0 1 0 0 0 0 5 0 0 12 0 1210.6558 O43395 O43395 578 589 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.00023271 88.681 By MS/MS By MS/MS 1 2 1.1213 0.97246 20.705 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69622 0.71594 NaN 1 0 Median 1.1718 1.0163 6.242 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12928000 7087000 5841100 0 0 0 0 0 0 8056300 4716200 3340200 4871700 2370800 2500900 0 0 0 0 0 0 5501 1569 5730 27876;27877;27878 28060;28061;28062 28060 3 DVNYGWIIR PDASTAFSSIAHITRDVNYGWIIRYLHANG IAHITRDVNYGWIIRYLHANGASMFFICLF R D V I R Y 0 1 1 1 0 0 0 1 0 2 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1134.5822 P00156 P00156 72 80 MT-CYB Cytochrome b yes yes 2 0.0022072 87.323 By MS/MS By matching By MS/MS 1 1 1 1.1178 1.26 21.92 3 Median 0.92677 0.92125 NaN 1 1 Median 1.6445 1.4053 NaN 1 0 Median 1.1178 1.26 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8465800 4236000 4229800 6651800 3437200 3214600 652650 257180 395470 1161300 541590 619750 0 0 0 0 0 0 0 0 0 5502 1811 5731 27879;27880;27881 28063;28064 28063 2 DVPAYSQDTFK NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE GPFRDVPAYSQDTFKVHYENNSPFLTITSM R D V F K V 1 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1269.5877 P04843;B7Z4L4 P04843 205 215 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00047715 73.067 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.2066 1.092 25.314 6 Median 1.0816 1.0948 35.458 2 0 Median 1.1447 0.95667 NaN 1 0 Median 1.3451 1.3278 NaN 1 1 Median 1.4659 1.2465 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88817 0.76643 NaN 1 0 Median 125630000 59800000 65834000 60337000 31075000 29262000 17172000 8078200 9093500 43311000 18966000 24345000 4449300 1451000 2998300 0 0 0 364360 229300 135060 5503 1853 5732 27882;27883;27884;27885;27886;27887 28065;28066;28067;28068;28069;28070;28071;28072 28066 8 DVPLGTPLCIIVEK EEGYLAKILVPEGTRDVPLGTPLCIIVEKE RDVPLGTPLCIIVEKEADISAFADYRPTEV R D V E K E 0 0 0 1 1 0 1 1 0 2 2 1 0 0 2 0 1 0 0 2 0 0 14 0 1552.8535 P10515;H0YDD4 P10515 283 296 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.01405 31.431 By MS/MS 1 0.99889 0.86251 NaN 1 Median NaN NaN NaN 0 0 Median 0.99889 0.86251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2264400 1188400 1075900 0 0 0 2264400 1188400 1075900 0 0 0 0 0 0 0 0 0 0 0 0 5504 1938 5733 27888 28073 28073 1 DVPLHALYDNVEK GKVASVEMVKYHHCRDVPLHALYDNVEKLF CRDVPLHALYDNVEKLFPGFEIETVKNNLR R D V E K L 1 0 1 2 0 0 1 0 1 0 2 1 0 0 1 0 0 0 1 2 0 0 13 0 1511.762 P08243;F8WEJ5 P08243 209 221 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.0015521 51.927 By MS/MS By matching 1 1 1.0842 0.98676 31.789 2 Median 1.289 1.2355 NaN 1 0 Median 0.91194 0.78811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6509300 2896200 3613100 4680500 1988800 2691600 1828800 907400 921430 0 0 0 0 0 0 0 0 0 0 0 0 5505 1901 5734 27889;27890 28074;28075 28074 2 DVPLPVVR KLWTMPISSVRFVPRDVPLPVVRVASVFAN SVRFVPRDVPLPVVRVASVFANADKGDDEK R D V V R V 0 1 0 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 3 0 0 8 0 893.53345 Q86U86;E7EVG2;H0Y5B5 Q86U86 1089 1096 PBRM1 Protein polybromo-1 yes no 2 0.026777 41.652 By matching By MS/MS By matching By matching 1 1 2 1 0.77744 0.68192 43.234 5 Median NaN NaN NaN 0 0 Median 0.50157 0.44336 NaN 1 0 Median 0.60794 0.6626 NaN 1 0 Median 1.0146 0.87126 34.65 2 0 Median NaN NaN NaN 0 0 Median 1.4685 1.2955 NaN 1 0 Median 17350000 10320000 7029900 0 0 0 427210 262890 164320 14892000 9013700 5877800 1665500 874200 791310 0 0 0 365910 169480 196420 5506 3273 5735 27891;27892;27893;27894;27895 28076 28076 1 DVPNETLQVEEDDRPELPWWK NLTEWIEILKTVVNRDVPNETLQVEEDDRP LQVEEDDRPELPWWKCKKWALHILARLFER R D V W K C 0 1 1 3 0 1 4 0 0 0 2 1 0 0 3 0 1 2 0 2 0 0 21 1 2594.2289 O95373 O95373 239 259 IPO7 Importin-7 yes yes 3 0.025375 14.46 By MS/MS 1 0.63842 0.66341 NaN 1 Median 0.63842 0.66341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2951500 1678400 1273100 2951500 1678400 1273100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5507 1768 5736 27896 28077 28077 1 DVPPLSETEATPVPIKDMEIAQTQK KDGVLTLANNVTPAKDVPPLSETEATPVPI TPVPIKDMEIAQTQKGISEDSHLESLQDVG K D V Q K G 2 0 0 2 0 2 3 0 0 2 1 2 1 0 4 1 3 0 0 2 0 0 25 1 2736.3892 E7EVA0;P27816 E7EVA0 592 616 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 1.8444E-08 45.735 By MS/MS By MS/MS By MS/MS 2 1 3 0.61507 0.61698 34.155 6 Median 0.41664 0.44806 44.457 2 0 Median NaN NaN NaN 0 0 Median 0.80047 0.92806 NaN 1 0 Median 0.6513 0.62041 12.62 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26945000 16420000 10525000 9726900 6832600 2894400 0 0 0 14113000 7762400 6350200 3105600 1824900 1280700 0 0 0 0 0 0 5508 895 5737 27897;27898;27899;27900;27901;27902 28078;28079;28080;28081;28082;28083 28080 6 DVQDELR RSQAASILTKFQELKDVQDELRIKENELRA LTKFQELKDVQDELRIKENELRALEEELAG K D V L R I 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 873.41921 O95347 O95347 683 689 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.020057 60.788 By matching By matching By matching By MS/MS 1 2 1 1 1.1814 1.02 23.647 5 Median 1.1814 1.1759 NaN 1 0 Median 1.0917 0.91971 14.635 2 0 Median 1.5709 1.47 NaN 1 0 Median 1.0049 0.85713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6342700 2806600 3536100 1450400 610790 839600 2528300 1206700 1321600 1296000 546020 750010 1068000 443090 624880 0 0 0 0 0 0 5509 1766 5738 27903;27904;27905;27906;27907 28084;28085 28084 2 DVQDSLTVSNEAQTAK VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA VQDSLTVSNEAQTAKEFIKIIENAENEYQT K D V A K E 2 0 1 2 0 2 1 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1704.8166 P52907 P52907 211 226 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2 5.8138E-10 150.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 2 1 1 1.1262 1.0404 14.711 9 Median 1.0434 0.94932 23.235 3 0 Median 1.2885 1.0803 NaN 1 0 Median 1.0464 1.0084 NaN 1 0 Median 1.254 1.0563 2.1415 2 0 Median 1.1262 1.1161 NaN 1 1 Median 1.066 0.89383 NaN 1 0 Median 91858000 41913000 49944000 26564000 12843000 13721000 24246000 10023000 14223000 25912000 12494000 13417000 11427000 4733600 6693700 2971100 1426100 1545000 738330 392990 345340 5510 2461 5739 27908;27909;27910;27911;27912;27913;27914;27915;27916 28086;28087;28088;28089;28090;28091;28092;28093;28094;28095;28096;28097;28098 28098 13 DVQEIATVVVPKPK RLKSILKLDGDVLMKDVQEIATVVVPKPKH KDVQEIATVVVPKPKHCQEKMQCEVKDEKD K D V P K H 1 0 0 1 0 1 1 0 0 1 0 2 0 0 2 0 1 0 0 4 0 0 14 1 1521.8766 Q9BRT6 Q9BRT6 43 56 LLPH Protein LLP homolog yes yes 3 0.0038874 32.734 By matching By MS/MS By matching 1 1 1 0.73502 0.78954 5.7137 3 Median 0.73502 0.74911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73037 0.8397 NaN 1 0 Median 0.93605 0.78954 NaN 1 0 Median 3977600 2254900 1722700 474790 291250 183540 0 0 0 0 0 0 0 0 0 3198100 1819800 1378300 304640 143870 160770 5511 3803 5740 27917;27918;27919 28099;28100 28099 2 DVQEIFR LDECDKMLEQLDMRRDVQEIFRMTPHEKQV LEQLDMRRDVQEIFRMTPHEKQVMMFSATL R D V F R M 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 905.46068 O00148;K7EQN7;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 210 216 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 0.001798 111.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 5 5 3 1.199 1.1484 14.218 19 Median 1.3684 1.3004 NaN 1 0 Median 1.5298 1.3025 15.49 2 0 Median 1.1729 1.1225 14.02 5 0 Median 1.3523 1.1484 19.637 5 0 Median 1.164 1.1547 8.0417 3 0 Median 1.199 1.0296 2.2798 3 0 Median 500910000 222670000 278250000 15433000 5800100 9633200 12504000 5164000 7340400 197950000 92801000 105150000 169190000 70262000 98925000 89824000 41187000 48637000 16015000 7451400 8563200 5512 2842;1441 5741 27920;27921;27922;27923;27924;27925;27926;27927;27928;27929;27930;27931;27932;27933;27934;27935;27936;27937;27938;27939;27940 28101;28102;28103;28104;28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120;28121;28122;28123 28111 23 DVQELLTQYTK GRIQRVARGSGVSTRDVQELLTQYTKFAQM VSTRDVQELLTQYTKFAQMVKKMGGIKGLF R D V T K F 0 0 0 1 0 2 1 0 0 0 2 1 0 0 0 0 2 0 1 1 0 0 11 0 1336.6874 G3V4F7;P61011 G3V4F7 352 362 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.00011279 121.83 By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 1.3955 1.1928 7.9013 6 Median NaN NaN NaN 0 0 Median 1.3614 1.1786 0.64609 2 0 Median 1.1283 1.1509 NaN 1 0 Median 1.4193 1.2203 NaN 1 0 Median 1.4803 1.4299 NaN 1 0 Median 1.4256 1.2016 NaN 1 0 Median 11096000 4885000 6211400 0 0 0 3805000 1519300 2285800 3440500 1655800 1784700 1865100 820920 1044100 657850 326290 331550 1327900 562670 765230 5513 1116 5742 27941;27942;27943;27944;27945;27946 28124;28125;28126;28127;28128 28127 5 DVQEQMAVLMQSR ILLEELQQGLSQAKRDVQEQMAVLMQSREQ KRDVQEQMAVLMQSREQVSEELVRLQKDND R D V S R E 1 1 0 1 0 3 1 0 0 0 1 0 2 0 0 1 0 0 0 2 0 0 13 0 1533.7279 Q15276 Q15276 623 635 RABEP1 Rab GTPase-binding effector protein 1 yes yes 2 0.042256 43.512 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5514 2937 5743 27947 28129 28129 1 DVQLHLER CQLARHRKSSTLEVKDVQLHLERQWNMWIP SSTLEVKDVQLHLERQWNMWIPGFGSEEIR K D V E R Q 0 1 0 1 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 1008.5352 Q16514 Q16514 115 122 TAF12 Transcription initiation factor TFIID subunit 12 yes yes 2 0.01443 70.919 By MS/MS 1 0.81435 0.77519 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81435 0.77519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3270000 1658400 1611700 0 0 0 0 0 0 3270000 1658400 1611700 0 0 0 0 0 0 0 0 0 5515 2983 5744 27948 28130 28130 1 DVQMLQDAISK YESLPEELQKCFDVKDVQMLQDAISKMDPT FDVKDVQMLQDAISKMDPTDAKYHMQRCID K D V S K M 1 0 0 2 0 2 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1246.6227 Q16543;K7EQA9;K7EL68;K7EIU0 Q16543 313 323 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.00016921 79.974 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0643 0.94331 33.902 4 Median 1.0341 0.95374 NaN 1 0 Median 1.0955 0.93299 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2735 1.1359 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56911 0.5214 NaN 1 0 Median 30725000 14598000 16127000 24987000 11785000 13202000 4528400 2211600 2316800 0 0 0 1096000 517770 578180 0 0 0 113710 83402 30307 5516 2988 5745 27949;27950;27951;27952 28131;28132;28133 28131 3 DVQNFPAATDEKDKFVEK KNLDQMKKQISDVERDVQNFPAATDEKDKF NFPAATDEKDKFVEKMTSFVKDAQEQYNKL R D V E K M 2 0 1 3 0 1 2 0 0 0 0 3 0 2 1 0 1 0 0 2 0 0 18 2 2080.0113 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 1072 1089 DIAPH1 Protein diaphanous homolog 1 yes no 3;4 4.1456E-10 98.062 By MS/MS By matching By MS/MS By matching 4 2 1 2 0.95756 0.92021 29.228 8 Median 0.72392 0.78327 8.4296 3 0 Median 0.95756 0.90943 6.4099 2 0 Median 1.0204 1.2262 NaN 1 0 Median 1.4863 1.5064 23.217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73510000 39855000 33655000 52707000 30757000 21950000 7888300 3975700 3912600 10136000 4080300 6055900 2779100 1041900 1737300 0 0 0 0 0 0 5517 274 5746 27953;27954;27955;27956;27957;27958;27959;27960;27961 28134;28135;28136;28137;28138;28139 28137 6 DVQTALALAK GNNCVFAPADVTSEKDVQTALALAKGKFGR VTSEKDVQTALALAKGKFGRVDVAVNCAGI K D V A K G 3 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1028.5866 Q99714;Q5H928 Q99714 70 79 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 0.00047649 90.657 By MS/MS By matching By MS/MS 1 1 1 1.1195 1.0505 6.8229 3 Median 1.1088 1.0257 NaN 1 0 Median 1.3796 1.1661 NaN 1 0 Median 1.1195 1.0505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44309000 20988000 23321000 32304000 15332000 16971000 2761700 1108000 1653800 9244100 4548200 4696000 0 0 0 0 0 0 0 0 0 5518 3764 5747 27962;27963;27964 28140;28141;28142 28140 3 DVREWQHEEFYR RRMNTLQAIWMMDPKDVREWQHEEFYRYVA DPKDVREWQHEEFYRYVAQAHDKPRYTLHY K D V Y R Y 0 2 0 1 0 1 3 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 12 1 1692.7645 I3L0K7;I3L239;Q12931 Q12931 305 316 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 3 0.0012052 45.28 By MS/MS 2 1.2519 1.2582 13.48 2 Median 1.2519 1.2582 13.48 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9884300 4374600 5509600 9884300 4374600 5509600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5519 2771;1269 5748 27965;27966 28143 28143 1 DVRPYIVGAVVR ENPVPLTVRVSPEVRDVRPYIVGAVVRGMD EVRDVRPYIVGAVVRGMDLQPGNALKRFLT R D V V R G 1 2 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 4 0 0 12 1 1342.7721 Q8N1G4 Q8N1G4 331 342 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 3.6551E-05 121.61 By MS/MS By matching By MS/MS By MS/MS 2 3 2 2 1.1057 1.0832 9.4086 8 Median 1.0629 1.0472 7.6249 2 0 Median 1.1702 1.0627 13.446 2 0 Median 1.047 1.1684 13.549 2 0 Median 1.1444 1.0663 6.9044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59022000 27374000 31648000 23995000 10766000 13229000 12194000 5482000 6711700 19088000 9362100 9725500 3745600 1763800 1981900 0 0 0 0 0 0 5520 3359 5749 27967;27968;27969;27970;27971;27972;27973;27974;27975 28144;28145;28146;28147;28148;28149;28150 28144 7 DVSDEKLRDYIWNTLNSGR EVLVWLTQLQKEVGKDVSDEKLRDYIWNTL EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP K D V G R V 0 2 2 3 0 0 1 1 0 1 2 1 0 0 0 2 1 1 1 1 0 0 19 2 2280.1135 O75390;B4DJV2;A0A0C4DGI3 O75390 322 340 CS Citrate synthase, mitochondrial;Citrate synthase yes no 3 0.027287 14.928 By MS/MS 1 1.3325 1.5595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3325 1.5595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1522800 590940 931820 0 0 0 0 0 0 1522800 590940 931820 0 0 0 0 0 0 0 0 0 5521 594 5750 27976 28151;28152 28151 2 DVSDQIGNEEQVEDTFQK HDYEGGGIGEGEGMKDVSDQIGNEEQVEDT DQIGNEEQVEDTFQKGQEKDKEDPDSKSDI K D V Q K G 0 0 1 3 0 3 3 1 0 1 0 1 0 1 0 1 1 0 0 2 0 0 18 0 2079.9233 Q9NU22 Q9NU22 4688 4705 MDN1 Midasin yes yes 2 0.013451 39.73 By MS/MS 1 0.75652 0.80878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75652 0.80878 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11629000 5775100 5853600 0 0 0 0 0 0 11629000 5775100 5853600 0 0 0 0 0 0 0 0 0 5522 4112 5751 27977 28153 28153 1 DVSELTGFPEMLGGR GGTAKALRDAGLAVRDVSELTGFPEMLGGR DVSELTGFPEMLGGRVKTLHPAVHAGILAR R D V G R V 0 1 0 1 0 0 2 3 0 0 2 0 1 1 1 1 1 0 0 1 0 0 15 0 1606.7661 P31939;F8WEF0 P31939 50 64 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 2.6763E-06 81.865 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.94991 0.86292 26.538 6 Median 0.90216 0.86007 2.3809 2 0 Median 0.93366 0.8122 6.6538 2 1 Median 0.9909 1.0288 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5912 1.6023 NaN 1 0 Median NaN NaN NaN 0 0 Median 50772000 25162000 25610000 33639000 16735000 16904000 12756000 6240700 6515700 4032300 2056900 1975400 0 0 0 344400 128900 215500 0 0 0 5523 2207 5752;5753 27978;27979;27980;27981;27982;27983 28154;28155;28156;28157;28158;28159;28160 28160 940 7 DVSGPMPDSYSPR GVITYDLPTPPGEKKDVSGPMPDSYSPRYV KKDVSGPMPDSYSPRYVEAAWYPWWEQQGF K D V P R Y 0 1 0 2 0 0 0 1 0 0 0 0 1 0 3 3 0 0 1 1 0 0 13 0 1406.6136 P26640;A0A140T936;A0A140T954 P26640 291 303 VARS Valine--tRNA ligase yes no 2 3.3165E-05 91.855 By MS/MS By matching 1 1 0.63634 0.58746 30.913 2 Median 0.48251 0.47211 NaN 1 0 Median 0.83922 0.73099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3902000 2474900 1427100 2694200 1773500 920710 1207800 701410 506410 0 0 0 0 0 0 0 0 0 0 0 0 5524 2148 5754 27984;27985 28161 28161 1 DVSHEIIQHEVK EKESEPSEKIQKFTKDVSHEIIQHEVKSSK FTKDVSHEIIQHEVKSSKNSASSEKGKTKD K D V V K S 0 0 0 1 0 1 2 0 2 2 0 1 0 0 0 1 0 0 0 2 0 0 12 0 1432.731 Q7Z6E9;A0A2R8Y880 Q7Z6E9 1379 1390 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 0.00016223 71.268 By MS/MS By matching By matching 1 3 1 1.2815 1.1648 28.639 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96839 1.068 NaN 1 0 Median 1.2815 1.1648 28.738 3 0 Median 1.7559 1.8528 NaN 1 0 Median NaN NaN NaN 0 0 Median 19586000 9238000 10348000 0 0 0 0 0 0 13996000 6840100 7155800 2906300 1316900 1589500 2683900 1081000 1602900 0 0 0 5525 3251 5755 27986;27987;27988;27989;27990 28162;28163 28163 2 DVSLGTYGSR SSQDADEQDWEFQKRDVSLGTYGSRAAEPQ EFQKRDVSLGTYGSRAAEPQEQEFGKSAWI R D V S R A 0 1 0 1 0 0 0 2 0 0 1 0 0 0 0 2 1 0 1 1 0 0 10 0 1053.5091 Q9C0C2;A0A2R8Y5C4 Q9C0C2 934 943 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 2 0.0022568 60.91 By matching By MS/MS 1 1 1.2295 1.1227 14.215 2 Median 1.0171 1.0153 NaN 1 0 Median 1.4864 1.2414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3815800 1395000 2420800 2227500 870780 1356800 1588300 524240 1064000 0 0 0 0 0 0 0 0 0 0 0 0 5526 3903 5756 27991;27992 28164 28164 1 DVSPFDHSR RVAKLPKNKNRNRYRDVSPFDHSRIKLHQE NRNRYRDVSPFDHSRIKLHQEDNDYINASL R D V S R I 0 1 0 2 0 0 0 0 1 0 0 0 0 1 1 2 0 0 0 1 0 0 9 0 1058.4781 P18031 P18031 48 56 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 2 0.0084827 50.04 By MS/MS 1 1.1676 1.0164 NaN 1 Median NaN NaN NaN 0 0 Median 1.1676 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292500 714040 578440 0 0 0 1292500 714040 578440 0 0 0 0 0 0 0 0 0 0 0 0 5527 2052 5757 27993 28165 28165 1 DVSPPPLVVMAFSMK VEAMALKPDLVNVIKDVSPPPLVVMAFSMK DVSPPPLVVMAFSMKTMQNAKNHQNEIIAM K D V M K T 1 0 0 1 0 0 0 0 0 0 1 1 2 1 3 2 0 0 0 3 0 0 15 0 1616.8306 A0A087WU64;A6NMQ1;P09884 A0A087WU64 530 544 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.028421 25.474 By MS/MS By matching 1 2 0.60171 0.61673 11.772 3 Median 0.60171 0.56696 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60945 0.66422 10.49 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1912800 1155500 757290 1248800 771450 477320 0 0 0 663990 384030 279960 0 0 0 0 0 0 0 0 0 5528 26 5758 27994;27995;27996 28166 28166 1 DVSSADLVIK MDEVNLQMDAQERPRDVSSADLVIKNQQGI QERPRDVSSADLVIKNQQGIKAEIEARADR R D V I K N 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 2 0 0 10 0 1045.5655 O15020 O15020 1938 1947 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.003121 57.859 By MS/MS By matching 1 1 1.4567 1.4207 30.982 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0296 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0609 1.7687 NaN 1 0 Median 9090200 4340800 4749400 0 0 0 0 0 0 8171000 4150500 4020600 0 0 0 0 0 0 919110 190310 728810 5529 1512 5759 27997;27998 28167 28167 1 DVSSVELLMNNHQGIK MEDVIRQIEAQEKPRDVSSVELLMNNHQGI VSSVELLMNNHQGIKAEIDARNDSFTTCIE R D V I K A 0 0 2 1 0 1 1 1 1 1 2 1 1 0 0 2 0 0 0 2 0 0 16 0 1782.8934 Q01082;A0A087WUZ3 Q01082 1942 1957 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 8.6456E-47 222.3 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 4 4 2 2 1.1271 1.0896 26.966 18 Median 1.2878 1.2419 31.955 3 0 Median 1.3362 1.1843 33.584 3 0 Median 0.99953 1.0981 24.17 4 1 Linear 1.0429 0.96538 15.001 4 0 Median 0.99447 1.0423 26.134 2 0 Median 1.4448 1.247 0.63576 2 0 Median 220740000 111130000 109610000 35706000 15466000 20240000 16547000 7190600 9356500 149560000 79070000 70488000 4405200 2124200 2281000 13819000 6954200 6864600 705630 321970 383670 5530 2681 5760;5761 27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014;28015;28016 28168;28169;28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181 28174 1364 14 DVTEAEQAEEQAR HALTGASDSRVILWKDVTEAEQAEEQARQE WKDVTEAEQAEEQARQEEQVVRQQELDNLL K D V A R Q 3 1 0 1 0 2 4 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 13 0 1474.6536 Q12788;J3KNP2 Q12788 634 646 TBL3 Transducin beta-like protein 3 yes no 2 1.3011E-06 155.15 By MS/MS By MS/MS By matching 1 1 1 1.2168 1.282 19.747 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2168 1.3067 NaN 1 0 Median 1.342 1.1564 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0957 0.88796 NaN 1 0 Median 6461800 2572500 3889300 0 0 0 0 0 0 3291300 1270000 2021300 2410800 1020700 1390100 0 0 0 759720 281820 477900 5531 2757 5762 28017;28018;28019 28182;28183;28184;28185 28182 4 DVTFSPATIENELIK CISYLGRFYQDLKDRDVTFSPATIENELIK DVTFSPATIENELIKFCREARGKENRLCYY R D V I K F 1 0 1 1 0 0 2 0 0 2 1 1 0 1 1 1 2 0 0 1 0 0 15 0 1675.8669 P55145;A8K878;H7C2D6 P55145 48 62 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2 0.0013386 40.589 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.94102 0.90468 9.6407 5 Median 0.88648 0.83626 NaN 1 0 Median 1.2002 1.0526 NaN 1 0 Median 0.93499 0.89527 1.4773 2 0 Median 1.2303 1.0148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6100600 2970500 3130100 296310 167790 128520 360780 151440 209350 4774600 2372800 2401800 668910 278530 390380 0 0 0 0 0 0 5532 538 5763 28020;28021;28022;28023;28024 28186;28187;28188 28186 3 DVTGAEALLER INGIRGLVSSDELAKDVTGAEALLERHQEH ELAKDVTGAEALLERHQEHRTEIDARAGTF K D V E R H 2 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1172.6037 A0A0D9SF54;Q13813 Q13813 1370 1380 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00011427 129.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 1 1.1209 1.0237 22.795 9 Median 1.4117 1.3251 NaN 1 0 Median 1.2806 1.0246 NaN 1 0 Median 0.69451 0.76055 42.02 2 0 Median 1.1209 0.98722 4.034 3 0 Median 1.0656 1.0899 NaN 1 0 Median 1.1233 0.92345 NaN 1 0 Median 130940000 64073000 66872000 11387000 4806700 6580100 22512000 9562200 12950000 69908000 36847000 33060000 9232600 4177000 5055600 17347000 8399300 8947700 557920 280100 277810 5533 264;2838 5764 28025;28026;28027;28028;28029;28030;28031;28032;28033 28189;28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200 28192 12 DVTLHQALLR SGKQQIAKENQQVAKDVTLHQALLRLPQYQ QQVAKDVTLHQALLRLPQYQTDLLLTFNQP K D V L R L 1 1 0 1 0 1 0 0 1 0 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1164.6615 Q9HD47 Q9HD47 121 130 RANGRF Ran guanine nucleotide release factor yes yes 2 0.0016573 63.565 By MS/MS 1 0.77306 0.73238 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77306 0.73238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603400 1443200 1160200 0 0 0 0 0 0 2603400 1443200 1160200 0 0 0 0 0 0 0 0 0 5534 4038 5765 28034 28201 28201 1 DVTNFTVGGFAPMSPR CKTRHLVLAGGSKPRDVTNFTVGGFAPMSP VTNFTVGGFAPMSPRISSPMHPSAGGQRGG R D V P R I 1 1 1 1 0 0 0 2 0 0 0 0 1 2 2 1 2 0 0 2 0 0 16 0 1694.8086 O00267 O00267 653 668 SUPT5H Transcription elongation factor SPT5 yes yes 2 4.8528E-05 79.82 By MS/MS By MS/MS By matching 1 3 1 0.78577 0.83703 26.402 5 Median 0.85845 0.84849 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60209 0.66234 19.992 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2231 1.1234 NaN 1 0 Median 12096000 7422000 4673900 2050600 1124300 926320 0 0 0 9977400 6264300 3713100 0 0 0 0 0 0 67909 33437 34473 5535 1452 5766;5767 28035;28036;28037;28038;28039 28202;28203;28204;28205;28206 28202 468 5 DVTNNVHYENYR ILRNMLIRTHMQDLKDVTNNVHYENYRSRK DLKDVTNNVHYENYRSRKLAAVTYNGVDNN K D V Y R S 0 1 3 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 12 0 1522.6801 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 279 290 SEPT7 Septin-7 yes no 2;3 4.5206E-41 225.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 6 2 1.098 0.97431 16.335 15 Median 0.9278 0.92532 NaN 1 0 Median 1.2442 1.0728 18.785 2 0 Median 0.95096 0.91736 15.481 4 0 Median 1.2362 1.0602 17.273 6 0 Median NaN NaN NaN 0 0 Median 1.0666 0.92375 13.794 2 0 Median 438660000 203390000 235270000 2188700 1091900 1096800 4480900 2215800 2265100 203910000 103990000 99913000 226040000 95267000 130770000 0 0 0 2043100 818870 1224300 5536 870 5768 28040;28041;28042;28043;28044;28045;28046;28047;28048;28049;28050;28051;28052;28053;28054 28207;28208;28209;28210;28211;28212;28213;28214;28215;28216;28217;28218;28219;28220;28221;28222 28211 16 DVTPPPETEVVLIK KDMSPLSETEMALGKDVTPPPETEVVLIKN KDVTPPPETEVVLIKNVCLPPEMEVALTED K D V I K N 0 0 0 1 0 0 2 0 0 1 1 1 0 0 3 0 2 0 0 3 0 0 14 0 1535.8447 E7EVA0;P27816 E7EVA0 536 549 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.0017783 46.706 By matching By MS/MS By MS/MS 1 2 3 0.73862 0.63233 37.088 6 Median NaN NaN NaN 0 0 Median 0.51029 0.43738 NaN 1 0 Median 1.0117 1.0738 19.3 2 0 Median 0.72902 0.61283 6.5613 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13787000 6652700 7134800 0 0 0 968220 635610 332610 9599300 4137500 5461800 3220000 1879600 1340300 0 0 0 0 0 0 5537 895 5769 28055;28056;28057;28058;28059;28060 28223;28224;28225;28226;28227 28223 5 DVTVLSVAEEQDLLKQER ELIDQDDCISHSEPKDVTVLSVAEEQDLLK VLSVAEEQDLLKQERLVTVDEIGEVEELPL K D V E R L 1 1 0 2 0 2 3 0 0 0 3 1 0 0 0 1 1 0 0 3 0 0 18 1 2071.0797 Q14966;A0A096LPK8 Q14966 1662 1679 ZNF638 Zinc finger protein 638 yes no 2;3 1.5061E-13 113.65 By MS/MS By matching 2 1 0.81357 0.96107 1.4282 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80024 0.95724 1.9933 2 0 Median NaN NaN NaN 0 0 Median 0.84754 0.96107 NaN 1 0 Median NaN NaN NaN 0 0 Median 11010000 6088500 4921700 0 0 0 0 0 0 9553600 5228500 4325000 0 0 0 1456600 859950 596670 0 0 0 5538 2903 5770 28061;28062;28063 28228;28229;28230 28229 3 DVTVPELR HSGRCAFWGNVEVGRDVTVPELREAYHAVV GNVEVGRDVTVPELREAYHAVVLSYGAEDH R D V L R E 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 927.50255 P22570 P22570 116 123 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes yes 2 0.0030883 101.64 By matching By MS/MS By MS/MS 1 1 2 0.76625 0.75695 38.06 3 Median 0.71915 0.7113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76625 0.75695 NaN 1 0 Median 1.6431 1.4155 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23059000 10465000 12594000 1267300 750470 516810 0 0 0 10296000 5597200 4698800 11495000 4117500 7377900 0 0 0 0 0 0 5539 2102 5771 28064;28065;28066;28067 28231;28232;28233;28234 28231 4 DVVFNYLHATAFQGTPLAQAVEGPSENVR DVILREMQENDASMRDVVFNYLHATAFQGT TPLAQAVEGPSENVRKLSRADLTEYLSTHY R D V V R K 4 1 2 1 0 2 2 2 1 0 2 0 0 2 2 1 2 0 1 4 0 0 29 0 3129.552 P31930 P31930 181 209 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 3 9.382E-06 36.202 By matching By MS/MS 1 1 0.71282 0.70891 8.7938 2 Median 0.7634 0.75439 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66558 0.66617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7084200 3932700 3151600 1217400 631300 586130 0 0 0 5866800 3301400 2565400 0 0 0 0 0 0 0 0 0 5540 2205 5772 28068;28069 28235;28236;28237;28238 28237 4 DVVGNDVATILSR FQLRRVEEQREQEKRDVVGNDVATILSRRI KRDVVGNDVATILSRRIAVEYSDSEDDSSE R D V S R R 1 1 1 2 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 3 0 0 13 0 1357.7201 Q9Y6W5 Q9Y6W5 463 475 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 2 4.496E-11 112.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1171 0.98971 7.4156 4 Median 1.1686 1.1054 NaN 1 1 Median 1.0679 0.92409 NaN 1 0 Median 0.97151 0.99256 NaN 1 0 Median 1.1804 0.98687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30269000 14346000 15923000 18596000 8783500 9812300 2058200 1063400 994770 8502400 4008800 4493700 1112700 490710 621990 0 0 0 0 0 0 5541 4498 5773 28070;28071;28072;28073;28074 28239;28240;28241;28242;28243;28244;28245;28246 28240 8 DVVHTSEEAR YLRILMAIDSELVDRDVVHTSEEARRNTLI ELVDRDVVHTSEEARRNTLIKDTMREQCIP R D V A R R 1 1 0 1 0 0 2 0 1 0 0 0 0 0 0 1 1 0 0 2 0 0 10 0 1141.5364 O43592;F8WDU6 O43592 157 166 XPOT Exportin-T yes no 2 0.032874 33.263 By MS/MS 1 1.0848 0.99202 NaN 1 Median NaN NaN NaN 0 0 Median 1.0848 0.99202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 608670 261860 346810 0 0 0 608670 261860 346810 0 0 0 0 0 0 0 0 0 0 0 0 5542 1576 5774 28075 28247;28248 28247 2 DVVICPDASLEDAKK TVAGLAGKDPVQCSRDVVICPDASLEDAKK DVVICPDASLEDAKKEGPYDVVVLPGGNLG R D V K K E 2 0 0 3 1 0 1 0 0 1 1 2 0 0 1 1 0 0 0 2 0 0 15 1 1658.8185 Q99497;K7ELW0;K7EN27 Q99497 49 63 PARK7 Protein deglycase DJ-1 yes no 2;3 5.3966E-10 102.28 By MS/MS 3 1.2162 1.1142 10.221 3 Plateau NaN NaN NaN 0 0 Median 1.2162 1.1142 10.221 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33586000 15534000 18051000 0 0 0 33586000 15534000 18051000 0 0 0 0 0 0 0 0 0 0 0 0 5543 3749 5775 28076;28077;28078 28249;28250;28251;28252;28253;28254 28250 6 DVVLPTYDITHSMLEAMR SPIPIISWCGSLDSRDVVLPTYDITHSMLE LPTYDITHSMLEAMRGVTNDLLSIQGNTGP R D V M R G 1 1 0 2 0 0 1 0 1 1 2 0 2 0 1 1 2 0 1 2 0 0 18 0 2090.0176 Q7Z4H8 Q7Z4H8 270 287 KDELC2 KDEL motif-containing protein 2 yes yes 2;3 3.4992E-06 50.787 By MS/MS By MS/MS By MS/MS 2 2 1 0.89366 0.90508 15.007 5 Median 0.84408 0.83429 11.517 2 0 Median 1.2564 1.0919 2.7135 2 0 Median 0.84718 0.89172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12851000 6563900 6287300 8081500 4369500 3712000 2845900 1235200 1610700 1923900 959180 964680 0 0 0 0 0 0 0 0 0 5544 3246 5776 28079;28080;28081;28082;28083 28255;28256;28257;28258;28259;28260 28256 6 DVVMEPTMK EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE K D V M K T 0 0 0 1 0 0 1 0 0 0 0 1 2 0 1 0 1 0 0 2 0 0 9 0 1048.4933 Q9H0A0;A0A087WV29 Q9H0A0 923 931 NAT10 N-acetyltransferase 10 yes no 2 0.001584 79.906 By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1.2162 1.0389 17.497 6 Median NaN NaN NaN 0 0 Median 1.1822 1.0224 NaN 1 0 Median 0.72025 0.77735 NaN 1 0 Median 1.1499 0.96439 NaN 1 0 Median 1.2511 1.2903 NaN 1 0 Median 1.3151 1.1156 7.8191 2 0 Median 15359000 8448500 6910000 0 0 0 3474900 1682500 1792400 5980400 3499500 2480900 1179800 524930 654850 2194200 1346900 847270 2529100 1394600 1134500 5545 3921 5777 28084;28085;28086;28087;28088;28089 28261 28261 1 DVVNVYEPQLQHHVAQK AGNIANHFFTVPFLRDVVNVYEPQLQHHVA VNVYEPQLQHHVAQKKIPYVDTQGQLIKPD R D V Q K K 1 0 1 1 0 3 1 0 2 0 1 1 0 0 1 0 0 0 1 4 0 0 17 0 2003.0225 Q16222 Q16222 340 356 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes yes 3 6.0471E-06 61.265 By MS/MS By matching 1 1 0.94792 0.85135 4.3582 2 Median 0.88426 0.82552 NaN 1 0 Median 1.0162 0.878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24044000 13252000 10792000 22115000 12478000 9636900 1929200 774500 1154700 0 0 0 0 0 0 0 0 0 0 0 0 5546 2981 5778 28090;28091 28262;28263 28262 2 DVVQAYPEVR HERDINTDFLLVVLRDVVQAYPEVRIVLMS LVVLRDVVQAYPEVRIVLMSATIDTSMFCE R D V V R I 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 10 0 1174.5982 Q08211 Q08211 529 538 DHX9 ATP-dependent RNA helicase A yes yes 2 5.5884E-12 149.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 5 4 1.0002 0.95348 17.61 16 Median 1.3429 1.2933 NaN 1 0 Median 1.0549 0.89023 17.801 2 0 Median 0.96535 0.98511 19.922 3 0 Median 1.2368 1.0474 NaN 1 0 Median 0.91839 0.92059 19.762 5 1 Median 1.115 0.91008 12.663 4 0 Median 358800000 172480000 186320000 14039000 5660200 8378800 49793000 20469000 29323000 127080000 57972000 69111000 12162000 5183600 6978500 123060000 66311000 56746000 32669000 16884000 15785000 5547 2736 5779 28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104;28105;28106;28107 28264;28265;28266;28267;28268;28269;28270;28271;28272;28273;28274;28275;28276;28277;28278;28279;28280;28281;28282;28283;28284;28285;28286;28287;28288;28289;28290;28291;28292 28270 29 DVVVELK ______________________________ FFKSLVGKDVVVELKNDLSICGTLHSVDQY K D V L K N 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 7 0 800.46437 Q9Y333 Q9Y333 14 20 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.020057 60.788 By MS/MS By MS/MS 2 3 0.98147 0.93893 9.0296 5 Median NaN NaN NaN 0 0 Median 1.1239 0.93463 7.8803 2 0 Median 0.98147 0.93893 10.926 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12499000 6140600 6358800 0 0 0 5748300 2709800 3038500 6751000 3430700 3320300 0 0 0 0 0 0 0 0 0 5548 4405 5780 28108;28109;28110;28111;28112 28293;28294;28295 28295 3 DVWGIEGPIDAAFTR LDEKAVRPGYPKLIRDVWGIEGPIDAAFTR DVWGIEGPIDAAFTRVNCQGKTYLFKGSQY R D V T R V 2 1 0 2 0 0 1 2 0 2 0 0 0 1 1 0 1 1 0 1 0 0 15 0 1645.81 CON__Q3ZBS7;P04004 CON__Q3ZBS7 194 208 VTN Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B yes no 2 0.024167 39.917 By MS/MS 1 0.051562 0.054587 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.051562 0.054587 NaN 1 1 Median NaN NaN NaN 0 0 Median 1126500 1087400 39089 0 0 0 0 0 0 0 0 0 0 0 0 1126500 1087400 39089 0 0 0 + 5549 783 5781 28113 28296 28296 1 DVYDKVDYLSSLGK DVGRMGIEILSFTIKDVYDKVDYLSSLGKT KDVYDKVDYLSSLGKTQTAVVQRDADIGVA K D V G K T 0 0 0 3 0 0 0 1 0 0 2 2 0 0 0 2 0 0 2 2 0 0 14 1 1600.7985 J3QLD9;E7EMK3;Q14254;K7EKW9 J3QLD9 156 169 FLOT2 Flotillin-2 yes no 2 0.021364 37.995 By MS/MS By matching 1 1 2.2304 2.4425 142.26 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84797 0.89324 NaN 1 0 Median NaN NaN NaN 0 0 Median 5.8667 6.679 NaN 1 0 Median NaN NaN NaN 0 0 Median 4542800 1493000 3049800 0 0 0 0 0 0 2647100 1216300 1430800 0 0 0 1895700 276740 1619000 0 0 0 5550 856 5782 28114;28115 28297 28297 1 DVYHLNR TRKQVACEICGKIFRDVYHLNRHKLSHSGE EICGKIFRDVYHLNRHKLSHSGEKPYSCPV R D V N R H 0 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 915.45626 Q9HBE1;I3L2Z5;A0A087WWR2;P56270 Q9HBE1 366 372 PATZ1;MAZ POZ-, AT hook-, and zinc finger-containing protein 1;Myc-associated zinc finger protein no no 2 0.0072812 89.903 By MS/MS By MS/MS 1 1 0.9356 0.84718 11.603 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93546 0.91962 NaN 1 0 Median 0.93574 0.78044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6498500 3276300 3222300 0 0 0 0 0 0 2725000 1381500 1343500 3773600 1894800 1878800 0 0 0 0 0 0 5551 4017;61 5783 28116;28117 28298;28299;28300;28301 28301 4 DVYIVQDLMETDLYK GINDIIRAPTIEQMKDVYIVQDLMETDLYK DVYIVQDLMETDLYKLLKTQHLSNDHICYF K D V Y K L 0 0 0 3 0 1 1 0 0 1 2 1 1 0 0 0 1 0 2 2 0 0 15 0 1843.8914 P27361;E9PJF0;E9PQW4;E9PBK7;B3KR49;H0YDH9;P28482 P28482 100 114 MAPK3;MAPK1 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase;Mitogen-activated protein kinase 1 no no 2 1.4182E-10 167.6 By MS/MS By matching 1 1 1.051 1.0056 17.17 2 Median NaN NaN NaN 0 0 Median 1.0451 0.8906 NaN 1 0 Median 1.0568 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18010000 8888600 9121600 0 0 0 14412000 7192400 7219300 3598600 1696200 1902300 0 0 0 0 0 0 0 0 0 5552 2166;2153 5784 28118;28119 28302 28302 1 DVYLSPR SYGGPPRREPLPSRRDVYLSPRDDGYSTKD REPLPSRRDVYLSPRDDGYSTKDSYSSRDY R D V P R D 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 7 0 848.43922 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 204 210 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 1;2 0.00087631 117.16 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 5 2 0.88119 0.84205 26.59 12 Median NaN NaN NaN 0 0 Median 0.88622 0.75883 NaN 1 0 Median 1.2327 1.2366 62.549 2 0 Median 0.99256 0.84117 18.852 2 1 Median 0.82957 0.83933 9.7038 5 0 Median 1.2172 1.0097 10.782 2 0 Median 183610000 93404000 90205000 0 0 0 2597600 1359200 1238500 6488700 3763800 2724800 25642000 12040000 13602000 106330000 56679000 49655000 42547000 19562000 22985000 5553 2273;3632 5785 28120;28121;28122;28123;28124;28125;28126;28127;28128;28129;28130;28131 28303;28304;28305;28306;28307;28308;28309;28310;28311 28305 9 DVYLSPRDDGYSTK SYGGPPRREPLPSRRDVYLSPRDDGYSTKD RDVYLSPRDDGYSTKDSYSSRDYPSSRDTR R D V T K D 0 1 0 3 0 0 0 1 0 0 1 1 0 0 1 2 1 0 2 1 0 0 14 1 1614.7526 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 204 217 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.00048909 83.182 By MS/MS By MS/MS 1 1 1.1173 1.0749 12.771 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1492 1.1765 NaN 1 1 Median 1.0863 0.98212 NaN 1 1 Median 15196000 6370000 8825700 0 0 0 0 0 0 0 0 0 0 0 0 11283000 4813400 6469800 3912600 1556600 2355900 5554 2273;3632 5786 28132;28133 28312;28313 28312 2 DVYSVSVDQKER KMSFQWRIRNLPYPKDVYSVSVDQKERCII YPKDVYSVSVDQKERCIIVRTTNKKYYKKF K D V E R C 0 1 0 2 0 1 1 0 0 0 0 1 0 0 0 2 0 0 1 3 0 0 12 1 1423.6943 Q9BVM2;Q5JQQ2;Q5JQQ4 Q9BVM2 114 125 DPCD Protein DPCD yes no 2 0.0038993 62.303 By MS/MS By MS/MS 1 1 0.82889 0.87238 NaN 1 Median 0.82889 0.87238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1372700 581970 790770 1372700 581970 790770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5555 3857 5787 28134;28135 28314;28315 28314 2 DVYTGDALR AMRLVKDVFISAAERDVYTGDALRICIVTK ISAAERDVYTGDALRICIVTKEGIREETVS R D V L R I 1 1 0 2 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 9 0 1008.4876 P20618 P20618 214 222 PSMB1 Proteasome subunit beta type-1 yes yes 2 0.0022552 73.26 By matching By MS/MS 1 2 1.2485 1.0868 14.506 3 Plateau 1.0766 1.0812 NaN 1 0 Median 1.1576 0.9573 17.945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7124700 3170700 3954000 1254200 566530 687700 5870500 2604200 3266300 0 0 0 0 0 0 0 0 0 0 0 0 5556 2081 5788 28136;28137;28138 28316 28316 1 DVYVDSKDPVSSLQVK GEIARKDEKLLSFLKDVYVDSKDPVSSLQV VYVDSKDPVSSLQVKAAETCQEPKEFRLPK K D V V K A 0 0 0 3 0 1 0 0 0 0 1 2 0 0 1 3 0 0 1 4 0 0 16 1 1777.9098 Q9P032 Q9P032 67 82 NDUFAF4 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 yes yes 3 0.010261 34.498 By MS/MS 1 0.90307 0.91807 NaN 1 Median 0.90307 0.91807 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11070000 5858500 5211600 11070000 5858500 5211600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5557 4199 5789 28139 28317 28317 1 DVYVPNTTYR SRVRPTREILEFPARDVYVPNTTYRNLLYI EFPARDVYVPNTTYRNLLYIYPQSLNFANR R D V Y R N 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 2 2 0 0 10 0 1226.5932 Q96N67;A0A1B0GUE9 Q96N67 552 561 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.0013144 66.621 By MS/MS By MS/MS By MS/MS 1 1 2 9.9576 11.297 156.15 3 Plateau 0.76461 0.73595 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.0226 3.3536 182.84 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18592000 5591500 13001000 4327800 2227500 2100300 0 0 0 14265000 3364000 10901000 0 0 0 0 0 0 0 0 0 5558 3707 5790 28140;28141;28142;28143 28318;28319;28320;28321;28322 28319 5 DVYVQLYLQHLTAR LVANNVTLPAGEQRKDVYVQLYLQHLTARN KDVYVQLYLQHLTARNRPPLPAGTNSKGPP K D V A R N 1 1 0 1 0 2 0 0 1 0 3 0 0 0 0 0 1 0 2 2 0 0 14 0 1717.9152 P42166;P42167;G5E972 P42166 35 48 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 0.00078971 60.434 By MS/MS By matching By MS/MS By MS/MS 5 1 4 3 0.98334 0.97651 29.043 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92695 0.97651 16.489 5 0 Median 0.98334 0.8583 NaN 1 0 Median 0.93207 0.98328 4.1114 4 0 Median 1.3972 1.2037 53.792 3 1 Median 27939000 13773000 14165000 0 0 0 0 0 0 14312000 7346500 6965200 674420 318490 355940 8989600 4544000 4445600 3962900 1564300 2398600 5559 2306;2307 5791 28144;28145;28146;28147;28148;28149;28150;28151;28152;28153;28154;28155;28156 28323;28324;28325;28326;28327;28328 28323 6 DWEAIASR LDKLDGLRTGTKRKRDWEAIASRMEDYLQL TGTKRKRDWEAIASRMEDYLQLPDDYDTRA R D W S R M 2 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 8 0 946.45084 P49750;F8VU51 P49750 2069 2076 YLPM1 YLP motif-containing protein 1 yes no 2 0.014044 51.854 By matching By MS/MS 1 1 0.94434 1.018 12.078 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9973 1.1088 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8942 0.9347 NaN 1 0 Median NaN NaN NaN 0 0 Median 2530600 1257700 1272900 0 0 0 0 0 0 1169600 627730 541870 0 0 0 1361000 629980 731040 0 0 0 5560 2395 5792 28157;28158 28329 28329 1 DWEAYWR QGTVDEDSPVLTQDRDWEAYWRLLFKKISL SPVLTQDRDWEAYWRLLFKKISLEDIQAFE R D W W R L 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 7 0 1024.4403 Q8WXX5 Q8WXX5 96 102 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.029887 50.039 By MS/MS By matching 1 1 1.1066 1.0337 9.7367 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97483 0.96493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2562 1.1074 NaN 1 0 Median 4901200 2418800 2482500 0 0 0 0 0 0 4670800 2304300 2366400 0 0 0 0 0 0 230470 114430 116040 5561 3522 5793 28159;28160 28330 28330 1 DWEQFEYK MLLLYHSTMSSKSPRDWEQFEYKIQAELAV MSSKSPRDWEQFEYKIQAELAVILKFVLDH R D W Y K I 0 0 0 1 0 1 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 8 0 1143.4873 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;Q14980 Q14980 115 122 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0044009 81.784 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1.2148 1.1246 41.012 7 Median 3.3817 3.1961 NaN 1 0 Median 1.1475 0.99562 NaN 1 0 Median 0.93187 1.0268 NaN 1 0 Median 1.2405 1.1246 NaN 1 0 Median 1.1807 1.2249 5.6311 2 0 Median 1.226 1.0573 NaN 1 0 Median 26557000 13092000 13466000 1035600 238610 797010 752860 369730 383130 18602000 9677700 8924100 611880 266570 345310 5402600 2473300 2929300 152380 65629 86751 5562 2905;77 5794 28161;28162;28163;28164;28165;28166;28167 28331;28332 28331 2 DWLFAPHYR VFFQSLAVVEQEMKKDWLFAPHYRYYVREM EQEMKKDWLFAPHYRYYVREMRIHAYSQLL K D W Y R Y 1 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 9 0 1203.5825 Q15008 Q15008 285 293 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2 0.0070868 76.899 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5563 2911 5795 28168 28333 28333 1 DWNDMER GLLSIRYPMEHGIVKDWNDMERIWQYVYSK PMEHGIVKDWNDMERIWQYVYSKDQLQTFS K D W E R I 0 1 1 2 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 7 0 964.37088 P42025;P61163;R4GMT0;A0A1B0GVS3 P61163 82 88 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2 0.0096554 83.614 By MS/MS 1 1.5276 1.3335 NaN 1 Median NaN NaN NaN 0 0 Median 1.5276 1.3335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7830100 3749900 4080200 0 0 0 7830100 3749900 4080200 0 0 0 0 0 0 0 0 0 0 0 0 5564 2547;2304 5796 28169 28334;28335 28335 2 DWQSYYYHHPQDR YEYNRYRDYYRQYNRDWQSYYYHHPQDRDR NRDWQSYYYHHPQDRDRYYRNYYGYQGYR_ R D W D R D 0 1 0 2 0 2 0 0 2 0 0 0 0 0 1 1 0 1 3 0 0 0 13 0 1793.7546 Q1KMD3 Q1KMD3 721 733 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2;3;4 2.6176E-05 93.258 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 6 4 0.97557 0.81844 17.454 16 Median NaN NaN NaN 0 0 Median 0.93244 0.80274 21.797 2 0 Median 0.74835 0.79461 NaN 1 0 Median 1.1126 0.94416 8.7185 3 0 Median 0.7733 0.78419 26.492 6 0 Median 1.0022 0.82998 5.3361 4 0 Median 95740000 50250000 45490000 0 0 0 5382900 2703300 2679600 10563000 5670100 4893300 9552900 4988400 4564500 62901000 33443000 29458000 7339800 3445000 3894800 5565 3002 5797 28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180;28181;28182;28183;28184;28185 28336;28337;28338;28339;28340;28341;28342;28343;28344 28339 9 DWQSYYYHHPQDRDR YEYNRYRDYYRQYNRDWQSYYYHHPQDRDR DWQSYYYHHPQDRDRYYRNYYGYQGYR___ R D W D R Y 0 2 0 3 0 2 0 0 2 0 0 0 0 0 1 1 0 1 3 0 0 0 15 1 2064.8827 Q1KMD3 Q1KMD3 721 735 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 4 4.6357E-05 77.078 By MS/MS 2 0.86537 0.95625 13.993 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86537 0.95625 13.993 2 0 Median NaN NaN NaN 0 0 Median 17500000 9114300 8386000 0 0 0 0 0 0 0 0 0 0 0 0 17500000 9114300 8386000 0 0 0 5566 3002 5798 28186;28187 28345;28346 28346 2 DWSHYFK SKIREHLEKKGPQVRDWSHYFKIIEDLRAQ EKKGPQVRDWSHYFKIIEDLRAQIFANTVD R D W F K I 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 7 0 981.43447 P05783;F8VZY9 P05783 125 131 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.0073411 89.673 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 4 1 4 3 1.3933 1.2914 17.059 16 Median 1.4326 1.3228 27.306 2 0 Median 1.5676 1.3398 15.817 2 0 Median 1.3556 1.3614 19.836 4 0 Median 1.2438 1.1248 NaN 1 0 Median 1.4973 1.4663 5.1998 4 0 Median 1.3494 1.0928 3.8186 3 0 Median 515280000 219960000 295320000 73700000 32820000 40881000 16191000 6495200 9696100 150370000 67359000 83006000 83306000 35113000 48193000 129020000 51357000 77666000 62691000 26813000 35878000 5567 1869 5799 28188;28189;28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202;28203 28347;28348;28349;28350;28351;28352;28353;28354;28355;28356;28357;28358;28359;28360;28361;28362 28360 16 DWSNDVR INALDQLSNPELLFKDWSNDVRAELAKTPV SNPELLFKDWSNDVRAELAKTPVNKKNIEK K D W V R A 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 7 0 890.38824 P78527 P78527 3587 3593 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.026054 53.554 By matching By MS/MS 1 1 0.99936 0.95032 6.9028 2 Median NaN NaN NaN 0 0 Median 1.2118 0.99785 NaN 1 0 Median 0.82415 0.90505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10877000 4145000 6732300 0 0 0 7898500 2771600 5126900 2978700 1373300 1605400 0 0 0 0 0 0 0 0 0 5568 2647 5800 28204;28205 28363;28364 28363 2 DWSNGAVLQASSQLSR IKPRRKLAFRSGEARDWSNGAVLQASSQLS WSNGAVLQASSQLSRGSATTPRGVLHTFSP R D W S R G 2 1 1 1 0 2 0 1 0 0 2 0 0 0 0 4 0 1 0 1 0 0 16 0 1717.8384 Q86YP4 Q86YP4 517 532 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.010755 44.299 By MS/MS 1 0.53148 0.54584 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53148 0.54584 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7027900 3581800 3446100 0 0 0 0 0 0 7027900 3581800 3446100 0 0 0 0 0 0 0 0 0 5569 3309 5801 28206 28365 28365 1 DWSPTLYIR AGPSRTVGLFLQGGKDWSPTLYIRLVQDYG FLQGGKDWSPTLYIRLVQDYGLESEVAQHL K D W I R L 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 1 1 1 1 0 0 0 9 0 1149.5819 P43304 P43304 474 482 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.0073226 51.854 By matching By MS/MS By matching 2 1 1 1.2324 1.1529 55.501 4 Median 1.8182 1.8234 82.929 2 0 Median 1.4908 1.2928 NaN 1 0 Median 0.99726 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4976400 1953400 3023000 1656000 601830 1054100 2747900 1085300 1662600 572540 266300 306240 0 0 0 0 0 0 0 0 0 5570 2325 5802 28207;28208;28209;28210 28366 28366 1 DWVLNEFK WPAMGIHGDKSQQERDWVLNEFKHGKAPIL DKSQQERDWVLNEFKHGKAPILIATDVASR R D W F K H 0 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 8 0 1049.5182 J3KTA4;P17844 J3KTA4 381 388 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0069954 68.915 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 4 1 1.2702 1.2481 8.0955 11 Median 1.4439 1.3823 NaN 1 0 Median 1.2702 1.0923 NaN 1 0 Median 1.2108 1.1984 10.476 3 0 Median 1.4021 1.228 NaN 1 0 Median 1.2409 1.266 6.7126 4 0 Median 1.5405 1.265 NaN 1 0 Median 67458000 29183000 38275000 4993000 1911400 3081600 3130300 1260300 1869900 43882000 19093000 24789000 416280 166710 249560 12439000 5568900 6870100 2597000 1182600 1414400 5571 1334 5803 28211;28212;28213;28214;28215;28216;28217;28218;28219;28220;28221 28367;28368;28369;28370;28371;28372;28373;28374 28368 8 DWVLNEFR WPAMCIHGDKSQPERDWVLNEFRSGKAPIL DKSQPERDWVLNEFRSGKAPILIATDVASR R D W F R S 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 8 0 1077.5243 A0A1X7SBZ2;A0A1W2PQ51;Q92841;A0A0U1RQJ0 A0A1X7SBZ2 458 465 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0034866 93.262 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 6 3 4 1 1.0046 0.99473 8.8195 15 Median NaN NaN NaN 0 0 Median 1.1485 0.98489 NaN 1 0 Median 0.94152 0.95958 9.7278 6 1 Median 1.3043 1.1134 1.3191 3 0 Plateau 0.96844 1.0064 5.6263 4 0 Median 1.2155 1.0467 NaN 1 0 Median 87390000 42552000 44838000 0 0 0 2650100 1117300 1532800 69432000 34213000 35219000 3736100 1593100 2143000 9383500 4646600 4736900 2188400 982170 1206300 5572 343 5804 28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236 28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386 28378 12 DYAAYNVLDDPELR FSNAVVQILRLHGVRDYAAYNVLDDPELRQ RDYAAYNVLDDPELRQGIKDYSNWPTIPQV R D Y L R Q 2 1 1 3 0 0 1 0 0 0 2 0 0 0 1 0 0 0 2 1 0 0 14 0 1652.7682 Q86SX6 Q86SX6 84 97 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 2 0.00087248 57.348 By matching By matching By MS/MS 1 1 1 1.0829 1.0535 27.176 3 Median 0.69459 0.67243 NaN 1 0 Median 1.2501 1.0535 NaN 1 0 Median 1.0829 1.0974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4825400 2312400 2513000 574750 220180 354570 482870 198900 283980 3767800 1893300 1874500 0 0 0 0 0 0 0 0 0 5573 3264 5805 28237;28238;28239 28387;28388 28388 2 DYAFIHFDER AFSQFGKLERVKKLKDYAFIHFDERDGAVK VKKLKDYAFIHFDERDGAVKAMEEMNGKDL K D Y E R D 1 1 0 2 0 0 1 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1311.5884 B7Z645;O60506 O60506 372 381 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 0.013194 40.352 By MS/MS 2 0.9021 0.7774 6.5258 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9021 0.7774 6.5258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 766530 393580 372950 0 0 0 0 0 0 0 0 0 766530 393580 372950 0 0 0 0 0 0 5574 1619;634 5806 28240;28241 28389 28389 1 DYAFVHFEDR SFSEFGKLERVKKLKDYAFVHFEDRGAAVK VKKLKDYAFVHFEDRGAAVKAMDEMNGKEI K D Y D R G 1 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 10 0 1297.5728 O43390;B4DT28;A0A286YEZ8 O43390 375 384 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 0.00042849 89.247 By matching By MS/MS By MS/MS By MS/MS By matching 3 4 3 4 4 1.1624 1.0686 19.67 18 Median NaN NaN NaN 0 0 Median 1.5393 1.4038 11.282 3 0 Median 0.90686 0.9544 11.628 4 0 Median 1.3546 1.1248 31.579 3 0 Median 1.0253 1.0607 7.871 4 0 Median 1.2678 1.0699 9.1629 4 0 Median 24742000 12217000 12525000 0 0 0 2262600 877580 1385100 10559000 5790100 4768400 1641000 731130 909830 7698600 3747700 3950800 2581200 1070500 1510700 5575 1568 5807 28242;28243;28244;28245;28246;28247;28248;28249;28250;28251;28252;28253;28254;28255;28256;28257;28258;28259 28390;28391;28392;28393;28394;28395;28396;28397;28398 28393 8 DYAFVHMER KFEEYGPVIECDIVKDYAFVHMERAEDAVE ECDIVKDYAFVHMERAEDAVEAIRGLDNTE K D Y E R A 1 1 0 1 0 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 9 0 1166.5179 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 112 120 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0017097 78.516 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1.2126 1.2007 15.467 6 Median 1.0766 1.0858 NaN 1 0 Median 1.7679 1.5661 NaN 1 0 Median 1.1615 1.2007 10.105 2 0 Median 1.2437 1.0715 NaN 1 0 Median 1.2951 1.395 NaN 1 0 Median NaN NaN NaN 0 0 Median 19863000 9313800 10549000 1970900 886090 1084800 485320 191660 293660 14914000 7009300 7904300 498320 272600 225720 1995000 954060 1040900 0 0 0 5576 3870;3780 5808 28260;28261;28262;28263;28264;28265 28399;28400;28401 28400 3 DYALHWLVLGTHTSDEQNHLVVAR LTVQWLPEVTKPEGKDYALHWLVLGTHTSD GTHTSDEQNHLVVARVHIPNDDAQFDASHC K D Y A R V 2 1 1 2 0 1 1 1 3 0 4 0 0 0 0 1 2 1 1 3 0 0 24 0 2773.3936 Q16576;E9PC52;C9J7L0 Q16576 59 82 RBBP7 Histone-binding protein RBBP7 yes no 3;4 3.3928E-35 130.25 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 3 1.19 1.0938 22.786 10 Median 1.3757 1.3726 NaN 1 0 Median 1.5185 1.2984 23.561 2 0 Median 0.87204 0.84655 10.785 2 0 Median 1.2968 1.1277 NaN 1 0 Median 1.0792 1.0884 NaN 1 0 Median 1.0921 0.83109 23.103 3 0 Median 170630000 83518000 87115000 2679300 1221000 1458300 20486000 8937700 11548000 139770000 69882000 69890000 3088700 1358200 1730500 2740100 1322800 1417300 1867200 796920 1070300 5577 2990 5809 28266;28267;28268;28269;28270;28271;28272;28273;28274;28275 28402;28403;28404;28405;28406;28407 28402 6 DYAPPPR DSYSSRDYPSSRDTRDYAPPPRDYTYRDYG YPSSRDTRDYAPPPRDYTYRDYGHSSSRDD R D Y P R D 1 1 0 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 7 0 814.39735 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 233 239 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.018719 80.377 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.95463 0.83455 33.754 4 Median NaN NaN NaN 0 0 Median 1.6288 1.5315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99667 0.86939 NaN 1 0 Median 0.71516 0.71884 NaN 1 1 Median 0.91435 0.80111 NaN 1 0 Median 6104200 3016000 3088200 0 0 0 1225900 456070 769820 0 0 0 825770 420100 405670 3574200 1891700 1682500 478350 248130 230220 5578 2273;3632 5810 28276;28277;28278;28279 28408;28409;28410 28408 3 DYAPPPRDYTYR DSYSSRDYPSSRDTRDYAPPPRDYTYRDYG DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG R D Y Y R D 1 2 0 2 0 0 0 0 0 0 0 0 0 0 3 0 1 0 3 0 0 0 12 1 1512.6997 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 233 244 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 1.0213E-06 139.86 By MS/MS By MS/MS By MS/MS 1 8 2 0.65012 0.69391 14.041 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8335 0.77746 NaN 1 0 Median 0.58792 0.64907 15.61 8 0 Median 0.84451 0.74664 2.1801 2 0 Median 384790000 198240000 186550000 0 0 0 0 0 0 0 0 0 13808000 6330400 7477300 321050000 164380000 156670000 49926000 27529000 22397000 5579 2273;3632 5811 28280;28281;28282;28283;28284;28285;28286;28287;28288;28289;28290 28411;28412;28413;28414;28415;28416;28417;28418;28419;28420;28421;28422;28423;28424;28425;28426;28427;28428;28429;28430;28431;28432;28433;28434 28430 24 DYAVSTVPVADGLHLK RTNQRGAEILADTFKDYAVSTVPVADGLHL YAVSTVPVADGLHLKSFCSMAGPNLIAIGS K D Y L K S 2 0 0 2 0 0 0 1 1 0 2 1 0 0 1 1 1 0 1 3 0 0 16 0 1683.8832 O94760;B4DYP1 O94760 160 175 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 2 6.3831E-05 77.64 By MS/MS By matching 1 1 0.92258 0.82932 7.2383 2 Median 0.91597 0.87287 NaN 1 0 Median 0.92924 0.78794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6011900 2850000 3161800 5247400 2437500 2809800 764520 412530 351990 0 0 0 0 0 0 0 0 0 0 0 0 5580 1722 5812 28291;28292 28435;28436 28436 2 DYDAMGSQTK TGKISKLGRSFTRARDYDAMGSQTKFVQCP FTRARDYDAMGSQTKFVQCPDGELQKRKEV R D Y T K F 1 0 0 2 0 1 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 10 0 1114.4601 Q9Y230;M0R0Y3 Q9Y230 214 223 RUVBL2 RuvB-like 2 yes no 2 0.0014621 65.305 By matching By MS/MS By MS/MS 1 1 1 1.0723 0.92288 27.134 3 Median 1.0995 1.0806 NaN 1 0 Median 1.0723 0.92288 NaN 1 0 Median 0.62354 0.63695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4376000 2061100 2314800 1127900 485830 642030 1843300 732450 1110900 1404800 842850 561920 0 0 0 0 0 0 0 0 0 5581 4368 5813 28293;28294;28295 28437;28438;28439;28440 28439 4 DYDDMSPR MPPGRGGRPMPPSRRDYDDMSPRRGPPPPP PMPPSRRDYDDMSPRRGPPPPPPGRGGRGG R D Y P R R 0 1 0 3 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 8 0 997.38111 P61978;Q5T6W2 P61978 279 286 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 0.0011297 147.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 9 8 8 8 0.99393 0.89894 9.2435 43 Median 0.95248 0.92756 9.3986 4 0 Median 1.0401 0.90379 6.6487 6 0 Median 0.87675 0.85269 7.9388 9 0 Median 1.1234 0.97499 7.3079 8 0 Median 0.83403 0.85183 7.1147 8 0 Median 1.125 0.93514 8.1277 8 0 Median 401910000 201870000 200040000 23083000 11598000 11485000 19946000 9224500 10721000 164650000 85690000 78963000 75943000 35504000 40438000 81303000 43082000 38221000 36984000 16771000 20213000 5582 2565;3093 5814;5815 28296;28297;28298;28299;28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316;28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327;28328;28329;28330;28331;28332;28333;28334;28335;28336;28337;28338 28441;28442;28443;28444;28445;28446;28447;28448;28449;28450;28451;28452;28453;28454;28455;28456;28457;28458;28459;28460;28461;28462;28463;28464;28465;28466;28467;28468;28469;28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487;28488;28489;28490;28491;28492;28493;28494 28482 1237 54 DYDPVAAR VQWFKKFFDANYDGKDYDPVAARQGQETAV DANYDGKDYDPVAARQGQETAVAPSLVAPA K D Y A R Q 2 1 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 8 0 905.4243 Q15691 Q15691 123 130 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2 0.055228 50.127 By MS/MS By MS/MS 1 1 0.83807 0.76039 33.274 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97491 0.9621 NaN 1 1 Median 0.72044 0.60097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9892500 4881600 5010900 0 0 0 0 0 0 3213700 1422800 1790900 6678800 3458800 3220000 0 0 0 0 0 0 5583 2963 5816 28339;28340 28495;28496 28496 2 DYDVDHPGEADSVLR SSRLIEKECLEKESRDYDVDHPGEADSVLR DYDVDHPGEADSVLRGGSQVQARGRALNIV R D Y L R G 1 1 0 4 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 2 0 0 15 0 1686.7485 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 204 218 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 5.8253E-10 113.63 By MS/MS 2 0.67421 0.74142 9.309 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67421 0.74142 9.309 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18266000 10571000 7694400 0 0 0 0 0 0 18266000 10571000 7694400 0 0 0 0 0 0 0 0 0 5584 1437 5817 28341;28342 28497;28498 28497 2 DYDWINAER REAEDGAAKVSKMLKDYDWINAERHLFGQP VSKMLKDYDWINAERHLFGQPNSAYDFKTN K D Y E R H 1 1 1 2 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 9 0 1180.5149 O95347;A0A0C4DGE5 O95347 937 945 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.0074886 51.346 By matching By matching By MS/MS 1 1 2 1.1336 0.9795 22.263 4 Median 0.95526 0.95065 NaN 1 0 Median 1.1197 0.98088 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4011 1.2163 30.817 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4145700 1854000 2291700 1673800 695400 978390 1091400 530320 561090 0 0 0 1380500 628240 752230 0 0 0 0 0 0 5585 1766 5818 28343;28344;28345;28346 28499;28500 28499 2 DYEEVGVDSVEGEGEEEGEEY GEFSEAREDMAALEKDYEEVGVDSVEGEGE VDSVEGEGEEEGEEY_______________ K D Y E Y - 0 0 0 2 0 0 9 4 0 0 0 0 0 0 0 1 0 0 2 3 0 0 21 0 2347.8976 P68363;Q71U36 P68363 431 451 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 2 0.0024036 44.616 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4057400 0 0 0 0 0 0 0 0 4057400 0 0 0 0 0 0 0 0 0 0 0 5586 2633;3212 5819 28347 28501 28501 1 DYETATLSDIK HEAWTDGKEAMLKHRDYETATLSDIKALIR LKHRDYETATLSDIKALIRKHEAFESDLAA R D Y I K A 1 0 0 2 0 0 1 0 0 1 1 1 0 0 0 1 2 0 1 0 0 0 11 0 1254.598 O43707 O43707 440 450 ACTN4 Alpha-actinin-4 yes yes 2 0.00016921 79.974 By MS/MS By matching 1 1 1.4424 1.5339 52.667 2 Median 1.0941 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9017 2.2261 NaN 1 0 Median NaN NaN NaN 0 0 Median 23520000 8819300 14700000 14638000 6551400 8086200 0 0 0 0 0 0 0 0 0 8882000 2267800 6614100 0 0 0 5587 1585 5820 28348;28349 28502 28502 1 DYEVELLR KEKDAYHKKCDQKKKDYEVELLRFLESLPE KCDQKKKDYEVELLRFLESLPEEEQQRVLG K D Y L R F 0 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 1035.5237 P17480;E9PKP7 P17480 353 360 UBTF Nucleolar transcription factor 1 yes no 2 0.0079205 65.038 By matching By matching By MS/MS 1 1 1 0.98754 1.0578 17.785 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98754 1.0578 NaN 1 0 Median 1.6212 1.3943 NaN 1 0 Median 0.96927 1.0002 NaN 1 0 Median NaN NaN NaN 0 0 Median 11320000 5648800 5671700 0 0 0 0 0 0 3918100 1886500 2031600 226980 119830 107150 7175400 3642400 3532900 0 0 0 5588 2040 5821 28350;28351;28352 28503;28504 28503 2 DYFEEYGK FVGGIKEDTEEHHLRDYFEEYGKIDTIEII TEEHHLRDYFEEYGKIDTIEIITDRQSGKK R D Y G K I 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1049.4342 P22626;A0A087WUI2 P22626 130 137 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.0048619 79.116 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 4 4 1.1911 1.0015 8.2134 14 Median NaN NaN NaN 0 0 Median 1.3296 1.1442 NaN 1 0 Median 1.0176 1.0041 9.3214 3 0 Median 1.342 1.1381 2.0915 2 0 Median 1.0147 0.99247 8.2541 4 0 Median 1.2083 0.98353 3.6789 4 0 Median 261500000 122350000 139140000 0 0 0 3200100 1384600 1815600 134630000 64618000 70014000 12028000 4910500 7117700 50985000 24723000 26262000 60651000 26716000 33936000 5589 2103 5822 28353;28354;28355;28356;28357;28358;28359;28360;28361;28362;28363;28364;28365;28366 28505;28506;28507;28508;28509;28510;28511;28512;28513;28514;28515;28516;28517 28513 13 DYFEEYGKIDTIEIITDR FVGGIKEDTEEHHLRDYFEEYGKIDTIEII EEYGKIDTIEIITDRQSGKKRGFGFVTFDD R D Y D R Q 0 1 0 3 0 0 3 1 0 4 0 1 0 1 0 0 2 0 2 0 0 0 18 1 2219.0634 P22626;A0A087WUI2 P22626 130 147 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 7.511E-07 81.692 By matching By MS/MS By MS/MS By matching 2 5 4 2 1.0075 1.0612 22.14 13 Median NaN NaN NaN 0 0 Median 1.4483 1.3501 29.78 2 0 Median 1.0075 1.0467 21.141 5 0 Median NaN NaN NaN 0 0 Median 0.94829 1.0127 18.219 4 0 Median 1.3201 1.1307 8.966 2 0 Median 21513000 10324000 11188000 0 0 0 732680 297620 435060 11920000 5897800 6021800 0 0 0 8042000 3719900 4322100 818230 408870 409360 5590 2103 5823 28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379 28518;28519;28520;28521;28522;28523;28524;28525;28526;28527;28528;28529 28521 12 DYFEQYGK FVGGIKEDTEEHHLRDYFEQYGKIEVIEIM TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK R D Y G K I 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1048.4502 P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;F8VYN5;A0A2R8Y4L2 P09651 123 130 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2 0.0044851 81.297 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 2 1.1798 1.0121 11.012 15 Median 1.407 1.3132 7.7844 2 0 Median 1.2321 1.0472 8.2005 2 0 Median 1.067 1.0333 5.0676 3 0 Plateau 1.2219 1.0322 1.6708 3 0 Median 0.98012 0.99963 6.7964 3 0 Plateau 1.2015 0.97349 5.4773 2 0 Median 732740000 337970000 394770000 13617000 5737800 7878800 34556000 15457000 19099000 474150000 221100000 253050000 68596000 30251000 38346000 27438000 13798000 13640000 114380000 51619000 62757000 5591 1919;365 5824 28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391;28392;28393;28394 28530;28531;28532;28533;28534;28535;28536;28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547;28548;28549 28531 20 DYFFALAHTVR LHFTLVKDRNVATPRDYFFALAHTVRDHLV ATPRDYFFALAHTVRDHLVGRWIRTQQHYY R D Y V R D 2 1 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 0 1 1 0 0 11 0 1338.6721 P11216 P11216 51 61 PYGB Glycogen phosphorylase, brain form yes yes 2 0.00096639 61.65 By MS/MS By matching 2 1 1.2802 1.1858 17.577 3 Median 1.3845 1.3573 19.105 2 0 Median 1.2802 1.1171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6863900 2917200 3946700 5041600 2186800 2854800 1822300 730370 1091900 0 0 0 0 0 0 0 0 0 0 0 0 5592 1956 5825 28395;28396;28397 28550;28551 28550 2 DYFGAHTYELLAK YRHEMLPASLIQAQRDYFGAHTYELLAKPG QRDYFGAHTYELLAKPGQFIHTNWTGHGGT R D Y A K P 2 0 0 1 0 0 1 1 1 0 2 1 0 1 0 0 1 0 2 0 0 0 13 0 1526.7405 P52209 P52209 448 460 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 2 0.013815 34.206 By MS/MS By matching By matching 1 1 1 1.6584 1.6367 16.499 3 Median 1.3378 1.2491 NaN 1 0 Median 1.8693 1.6845 NaN 1 0 Median 1.6584 1.6367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13289000 5572400 7716600 8532500 3786700 4745800 265600 77973 187630 4490900 1707700 2783200 0 0 0 0 0 0 0 0 0 5593 2447 5826 28398;28399;28400 28552 28552 1 DYFGLLFQESPEQK VLFDKVCEHLNLLEKDYFGLLFQESPEQKN KDYFGLLFQESPEQKNWLDPAKEIKRQLRN K D Y Q K N 0 0 0 1 0 2 2 1 0 0 2 1 0 2 1 1 0 0 1 0 0 0 14 0 1699.8094 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 257 270 EPB41L2 Band 4.1-like protein 2 yes no 2 0.043911 24.855 By MS/MS By matching 1 1 0.78694 0.75879 17.332 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80527 0.85773 NaN 1 0 Median 0.76903 0.67127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217400 658650 558710 0 0 0 0 0 0 1067300 580410 486940 150020 78241 71774 0 0 0 0 0 0 5594 1573 5827 28401;28402 28553 28553 1 DYFNVPYPLPK KFALEVAAKTLPFYKDYFNVPYPLPKIDLI PFYKDYFNVPYPLPKIDLIAIADFAAGAME K D Y P K I 0 0 1 1 0 0 0 0 0 0 1 1 0 1 3 0 0 0 2 1 0 0 11 0 1351.6812 E9PLK3;P55786;A6NEC2 E9PLK3 290 300 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.00044263 69.598 By MS/MS 3 0.70392 0.68175 13.569 3 Median 0.70392 0.68175 13.569 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13598000 7718300 5879800 13598000 7718300 5879800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5595 960 5828 28403;28404;28405 28554;28555 28554 2 DYGHSSSRDDYPSR DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS R D Y S R G 0 2 0 3 0 0 0 1 1 0 0 0 0 0 1 4 0 0 2 0 0 0 14 1 1640.6815 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 245 258 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3;4 8.5788E-05 74.987 By MS/MS By MS/MS By MS/MS 2 7 4 0.86816 0.91188 14.71 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0623 0.99089 11.751 2 0 Median 0.80679 0.86114 12.58 7 0 Median 1.1714 1.0356 17.29 4 0 Median 49987000 25736000 24251000 0 0 0 0 0 0 0 0 0 1235500 624150 611390 42086000 22106000 19980000 6665200 3005900 3659200 5596 2273;3632 5829 28406;28407;28408;28409;28410;28411;28412;28413;28414;28415;28416;28417;28418 28556;28557;28558;28559;28560;28561;28562;28563;28564;28565;28566;28567 28558 12 DYGNSPLHR VQLPREGQEDQGLTKDYGNSPLHRFKKPGS DQGLTKDYGNSPLHRFKKPGSKNFQNIFPP K D Y H R F 0 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 9 0 1057.4941 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;A0A087WUW5;K7ELW5 A0A0U1RRM4 486 494 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.00034235 136.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 1.0774 0.94042 8.6731 10 Median 1.0209 1.0322 NaN 1 0 Median 1.0106 0.86629 12.851 2 0 Median 0.93276 0.89982 16.292 2 0 Median 1.0921 0.9291 0.47254 2 0 Median 0.91086 0.91459 NaN 1 1 Median 1.1295 0.95676 0.54422 2 0 Median 52840000 26802000 26038000 2069100 929920 1139100 8753300 4006700 4746600 26926000 14497000 12429000 3107500 1421000 1686500 3824200 2000500 1823700 8159000 3946500 4212500 5597 312 5830 28419;28420;28421;28422;28423;28424;28425;28426;28427;28428;28429 28568;28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583 28571 16 DYGVLLEGSGLALR MNIALLSDLTKQISRDYGVLLEGSGLALRG RDYGVLLEGSGLALRGLFIIDPNGVIKHLS R D Y L R G 1 1 0 1 0 0 1 3 0 0 4 0 0 0 0 1 0 0 1 1 0 0 14 0 1461.7827 P30048 P30048 171 184 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 4.287E-08 147.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 1 1 1.4522 1.2176 17.56 10 Median 1.0524 1.0236 1.5977 2 0 Median 1.4522 1.2176 4.4518 4 0 Median 1.1548 1.0811 NaN 1 0 Median 1.7767 1.4611 NaN 1 0 Median 1.7656 1.7364 NaN 1 0 Median 1.8442 1.4887 NaN 1 0 Median 134770000 59156000 75617000 71811000 33602000 38209000 55612000 22887000 32725000 1348200 637700 710450 475890 178450 297440 2215100 738010 1477100 3309800 1112000 2197800 5598 2183 5831 28430;28431;28432;28433;28434;28435;28436;28437;28438;28439 28584;28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600 28596 17 DYGVYLEDSGHTLR IRIPLLSDLTHQISKDYGVYLEDSGHTLRG KDYGVYLEDSGHTLRGLFIIDDKGILRQIT K D Y L R G 0 1 0 2 0 0 1 2 1 0 2 0 0 0 0 1 1 0 2 1 0 0 14 0 1623.7529 Q13162;H7C3T4 Q13162 187 200 PRDX4 Peroxiredoxin-4 yes no 2;3 1.6969E-09 155.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 8 1 1 1 2 1.1451 1.092 31.447 17 Median 1.165 1.06 4.9279 4 0 Linear 0.92495 0.80103 37.149 8 2 Median 1.1745 1.1283 NaN 1 0 Median 1.3987 1.1581 NaN 1 0 Median 1.5068 1.4708 NaN 1 0 Median 1.349 1.0713 36.067 2 0 Median 962520000 434760000 527760000 700540000 322420000 378130000 242780000 104190000 138590000 13635000 6033100 7601700 2170800 868270 1302500 1214000 420360 793670 2174100 826320 1347800 5599 2793 5832 28440;28441;28442;28443;28444;28445;28446;28447;28448;28449;28450;28451;28452;28453;28454;28455;28456 28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621 28602 21 DYHFKVDNDENEHQLSLR RPQNYLFGCELKADKDYHFKVDNDENEHQL FKVDNDENEHQLSLRTVSLGAGAKDELHIV K D Y L R T 0 1 2 3 0 1 2 0 2 0 2 1 0 1 0 1 0 0 1 1 0 0 18 1 2258.0352 P06748 P06748 28 45 NPM1 Nucleophosmin yes yes 4 1.4945E-06 64.507 By MS/MS By MS/MS 1 2 1.3646 1.3116 8.0992 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2901 1.399 NaN 1 0 Median 1.3772 1.2499 6.8203 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17604000 7299200 10305000 0 0 0 0 0 0 13871000 5771000 8099700 3733400 1528300 2205100 0 0 0 0 0 0 5600 1877 5833 28457;28458;28459 28622;28623;28624 28623 3 DYIAYAHSTIMPR EEQAEEELLDMAVLKDYIAYAHSTIMPRLS LKDYIAYAHSTIMPRLSEEASQALIEAYVD K D Y P R L 2 1 0 1 0 0 0 0 1 2 0 0 1 0 1 1 1 0 2 0 0 0 13 0 1536.7395 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 639 651 MCM4 DNA replication licensing factor MCM4 yes no 2;3 3.8663E-07 121.9 By MS/MS By matching By MS/MS 2 1 2 0.91228 0.88638 6.9542 5 Median 0.90279 0.87145 6.3954 2 0 Median 1.0043 0.88638 NaN 1 0 Median 0.83799 0.89495 12.056 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25446000 12200000 13246000 14907000 7462000 7444900 913890 388000 525890 9624900 4350000 5274900 0 0 0 0 0 0 0 0 0 5601 441 5834 28460;28461;28462;28463;28464 28625;28626;28627;28628 28625 4 DYIFGDYIER EEVDMKEMEKALQERDYIFGDYIERLWAYL ALQERDYIFGDYIERLWAYLTIEQLLDKRK R D Y E R L 0 1 0 2 0 0 1 1 0 2 0 0 0 1 0 0 0 0 2 0 0 0 10 0 1289.5928 CON__Q0V8M9 CON__Q0V8M9 547 556 yes yes 2 0.027284 48.796 By MS/MS 1 0.054255 0.054237 NaN 1 Median 0.054255 0.054237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 494750 472420 22331 494750 472420 22331 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 5602 770 5835 28465 28629 28629 1 DYIMEPSIFNTLK DAEVQQECLHKFSTRDYIMEPSIFNTLKRY TRDYIMEPSIFNTLKRYFQAGGSPENVIQL R D Y L K R 0 0 1 1 0 0 1 0 0 2 1 1 1 1 1 1 1 0 1 0 0 0 13 0 1569.7749 H0UI80;X6RLT1;Q8IXH7 H0UI80 64 76 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.011335 53.683 By MS/MS 2 0.57488 0.57218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57488 0.57218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189000 3631800 2557200 0 0 0 0 0 0 6189000 3631800 2557200 0 0 0 0 0 0 0 0 0 5603 1138 5836 28466;28467 28630;28631 28631 2 DYIPVDQEELR KAMSRPILYSNWLSKDYIPVDQEELRDYVK WLSKDYIPVDQEELRDYVKARLKVFYEEEL K D Y L R D 0 1 0 2 0 1 2 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 11 0 1375.662 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2880 2890 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00058837 78.556 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.90128 0.74209 89.671 5 Median 0.67192 0.66046 NaN 1 1 Median 0.97482 0.80919 12.242 2 0 Median 0.096662 0.10968 NaN 1 0 Median 1.0659 0.928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27724000 17454000 10271000 9495600 5135800 4359800 9054700 4734700 4320000 7132000 6546500 585510 2042200 1036500 1005600 0 0 0 0 0 0 5604 2865 5837 28468;28469;28470;28471;28472 28632;28633;28634;28635 28633 4 DYIPVDQEELRDYVK KAMSRPILYSNWLSKDYIPVDQEELRDYVK DYIPVDQEELRDYVKARLKVFYEEELDVPL K D Y V K A 0 1 0 3 0 1 2 0 0 1 1 1 0 0 1 0 0 0 2 2 0 0 15 1 1880.9156 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2880 2894 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.5365E-10 110.08 By MS/MS By matching By MS/MS 2 2 2 0.87729 0.96327 5.5479 6 Median 0.87729 0.92291 0.73068 2 0 Median 1.0569 1.0233 3.2242 2 0 Median 0.8304 0.96307 5.9415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104390000 56513000 47880000 70729000 38197000 32532000 2943100 1387900 1555200 30721000 16927000 13793000 0 0 0 0 0 0 0 0 0 5605 2865 5838 28473;28474;28475;28476;28477;28478 28636;28637;28638;28639;28640;28641;28642;28643;28644 28640 9 DYIQKHPELNISEEGITK HKALEQRKEYEEIMRDYIQKHPELNISEEG QKHPELNISEEGITKSTLTKAERQLKDKFD R D Y T K S 0 0 1 1 0 1 3 1 1 3 1 2 0 0 1 1 1 0 1 0 0 0 18 1 2113.0691 P17480;E9PKP7 P17480 262 279 UBTF Nucleolar transcription factor 1 yes no 3 1.6779E-06 74.519 By matching By MS/MS By matching 1 1 2 1.1209 1.1264 46.533 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39801 0.45528 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0183 1.1395 NaN 1 0 Median 1.2914 1.1582 5.568 2 0 Median 25074000 13455000 11618000 0 0 0 0 0 0 3267400 2490200 777240 0 0 0 19026000 9720400 9305900 2780100 1244900 1535200 5606 2040 5839 28479;28480;28481;28482 28645;28646 28646 2 DYIVVGSDSGR VIRSLMAFRLTGGTKDYIVVGSDSGRIVIL GGTKDYIVVGSDSGRIVILEYQPSKNMFEK K D Y G R I 0 1 0 2 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 2 0 0 11 0 1166.5568 Q15393;J3QRB2;J3QL37 Q15393 76 86 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.0035489 72.325 By MS/MS By MS/MS 1 1 1.1985 1.0251 37.871 2 Median NaN NaN NaN 0 0 Median 0.9329 0.78429 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5398 1.3399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331500 3198600 3132900 0 0 0 5276900 2674100 2602800 0 0 0 1054600 524430 530140 0 0 0 0 0 0 5607 2946 5840 28483;28484 28647;28648 28647 2 DYIWNTLNSGR LQKEVGKDVSDEKLRDYIWNTLNSGRVVPG EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP R D Y G R V 0 1 2 1 0 0 0 1 0 1 1 0 0 0 0 1 1 1 1 0 0 0 11 0 1337.6364 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 330 340 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.00011205 140.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1739 1.0622 8.4053 6 Median 0.99201 0.9378 NaN 1 0 Median 1.2388 1.0615 1.3002 2 0 Median 1.1092 1.1184 8.5018 2 0 Median 1.335 1.1603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69933000 32126000 37807000 21482000 10597000 10886000 20945000 8900800 12045000 23702000 10992000 12710000 3802800 1636200 2166600 0 0 0 0 0 0 5608 594 5841 28485;28486;28487;28488;28489;28490 28649;28650;28651;28652;28653;28654;28655;28656;28657 28654 9 DYLEAAIR RTHPVEIFYTPEPERDYLEAAIRTVIQIHM YTPEPERDYLEAAIRTVIQIHMCEEEEGDL R D Y I R T 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 O43143 O43143 330 337 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0053943 76.035 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1.1659 1.1285 10.122 5 Median 1.3469 1.306 NaN 1 0 Median 1.1659 1.0076 NaN 1 0 Median 1.0573 1.1285 NaN 1 0 Median 1.2201 1.0453 NaN 1 0 Median 1.1006 1.1641 NaN 1 0 Median NaN NaN NaN 0 0 Median 21326000 9382700 11944000 3480700 1236700 2244000 8875700 3975000 4900700 5124500 2406900 2717600 745210 333620 411590 3100300 1430400 1669900 0 0 0 5609 1553 5842 28491;28492;28493;28494;28495 28658;28659;28660;28661;28662 28658 5 DYLEHITSIGPR GAAGHRGEFDALQARDYLEHITSIGPRTTG QARDYLEHITSIGPRTTGSPENEILTVHYL R D Y P R T 0 1 0 1 0 0 1 1 1 2 1 0 0 0 1 1 1 0 1 0 0 0 12 0 1399.7096 Q7Z2K6;E7ER77 Q7Z2K6 114 125 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 3 0.0081616 28.327 By matching By MS/MS By matching 2 2 1 1.0321 1.0236 4.0854 5 Median 1.0174 1.0052 2.5732 2 0 Median 1.2276 1.0303 5.9974 2 0 Median 0.96415 1.0672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23682000 11047000 12636000 11454000 6090300 5363300 9739600 3786100 5953500 2489300 1170300 1319000 0 0 0 0 0 0 0 0 0 5610 883 5843 28496;28497;28498;28499;28500 28663 28663 1 DYLHLPPEIVPATLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR DYLHLPPEIVPATLRRSRPETGRPRPKGLE R D Y L R R 1 1 0 1 0 0 1 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 15 0 1732.9512 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;A0A1W2PQS6;S4R435 P46783 81 95 RPS10;RPS10-NUDT3 40S ribosomal protein S10 no no 2;3 2.0535E-06 93.345 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 4 4 3 1 4 0.78173 0.68558 17.371 21 Median 0.66855 0.64156 10.531 5 0 Median 0.7758 0.64344 7.1938 4 0 Median 0.8001 0.78076 19.111 4 0 Median 0.84009 0.68558 15.503 3 0 Median 0.68638 0.66305 NaN 1 0 Median 0.94568 0.73964 25.669 4 0 Median 77678000 44820000 32858000 54969000 32198000 22771000 11719000 6382000 5336800 5453400 3190600 2262700 931960 499510 432450 431980 262600 169380 4172900 2286800 1886100 5611 2346;345 5844 28501;28502;28503;28504;28505;28506;28507;28508;28509;28510;28511;28512;28513;28514;28515;28516;28517;28518;28519;28520;28521 28664;28665;28666;28667;28668;28669;28670;28671;28672;28673;28674;28675;28676;28677;28678;28679;28680;28681;28682 28671 19 DYLHYHIK ASARDNTINLIHTFRDYLHYHIKCSKAYIH NLIHTFRDYLHYHIKCSKAYIHTRMRAKTS R D Y I K C 0 0 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 2 0 0 0 8 0 1087.5451 O15144;H7C3F9 O15144 249 256 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.0072009 89.142 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5612 1526 5845 28522;28523;28524 28683;28684;28685 28684 3 DYLHYIR VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R D Y I R K 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 978.49232 M0QZC5;P62280;M0R1H5 M0QZC5 91 97 RPS11 40S ribosomal protein S11 yes no 2 0.0026877 118.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 3 2 1.2014 1.083 15.449 13 Median 1.105 1.0437 16.749 3 0 Median 1.2014 0.99493 6.3497 3 1 Median 1.1626 1.1165 NaN 1 0 Median 1.4437 1.1958 NaN 1 0 Median 1.2556 1.3283 7.894 3 0 Plateau 1.068 0.89349 19.535 2 0 Median 249410000 114090000 135310000 132290000 62492000 69794000 41275000 18331000 22944000 27748000 12383000 15365000 3844500 1710900 2133600 32759000 13975000 18784000 11496000 5202500 6293300 5613 1422 5846 28525;28526;28527;28528;28529;28530;28531;28532;28533;28534;28535;28536;28537;28538 28686;28687;28688;28689;28690;28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701;28702 28696 17 DYLHYIRK VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR RTIVIRRDYLHYIRKYNRFEKRHKNMSVHL R D Y R K Y 0 1 0 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 0 0 0 8 1 1106.5873 M0QZC5;P62280;M0R1H5 M0QZC5 91 98 RPS11 40S ribosomal protein S11 yes no 2 0.02508 49.358 By MS/MS By MS/MS 1 1 1.2438 1.1637 9.0908 2 Median 1.0998 1.0913 NaN 1 0 Median 1.4067 1.241 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5278800 2450300 2828600 3902300 1827200 2075100 1376500 623050 753500 0 0 0 0 0 0 0 0 0 0 0 0 5614 1422 5847 28539;28540 28703;28704;28705 28704 3 DYLIDGSR AAQMLQSDPYSVPARDYLIDGSRGILSGTS PYSVPARDYLIDGSRGILSGTSDLLLTFDE R D Y S R G 0 1 0 2 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 937.45051 P18206 P18206 106 113 VCL Vinculin yes yes 2 0.0035575 88.942 By MS/MS By MS/MS 1 1 1.0913 0.9739 5.8387 2 Median 1.0532 1.0149 NaN 1 0 Median 1.1309 0.93451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45089000 20561000 24529000 9966500 4583400 5383100 35123000 15977000 19145000 0 0 0 0 0 0 0 0 0 0 0 0 5615 2057 5848 28541;28542 28706;28707;28708;28709 28707 4 DYLLCDYNR VDQPLKIARDKVVGKDYLLCDYNRDGDSYR DKVVGKDYLLCDYNRDGDSYRSPWSNKYDP K D Y N R D 0 1 1 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 9 0 1230.5339 B1AK87;B1AK88;P47756;B1AK85 B1AK87 46 54 CAPZB F-actin-capping protein subunit beta yes no 2 0.017009 42.109 By MS/MS 1 1.2364 1.0283 NaN 1 Median NaN NaN NaN 0 0 Median 1.2364 1.0283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8533500 3879400 4654100 0 0 0 8533500 3879400 4654100 0 0 0 0 0 0 0 0 0 0 0 0 5616 566 5849 28543 28710;28711 28711 2 DYLSPVLADLAQR QVLEPLMNLEVTVARDYLSPVLADLAQRRG ARDYLSPVLADLAQRRGNIQEIQTRQDNKV R D Y Q R R 2 1 0 2 0 1 0 0 0 0 3 0 0 0 1 1 0 0 1 1 0 0 13 0 1459.7671 Q969S9 Q969S9 699 711 GFM2 Ribosome-releasing factor 2, mitochondrial yes yes 2 0.0011611 73.067 By MS/MS 1 0.061103 0.052854 NaN 1 Median NaN NaN NaN 0 0 Median 0.061103 0.052854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30871000 30024000 846540 0 0 0 30871000 30024000 846540 0 0 0 0 0 0 0 0 0 0 0 0 5617 3587 5850 28544 28712 28712 1 DYMDTLPPTVGDDVGK VISPSANNGDAPEDRDYMDTLPPTVGDDVG YMDTLPPTVGDDVGKGAAPNVVYTYTGKRI R D Y G K G 0 0 0 4 0 0 0 2 0 0 1 1 1 0 2 0 2 0 1 2 0 0 16 0 1721.7818 F8WJN3;Q16630;F8W084;A0A3B3ISW1 F8WJN3 51 66 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 2.9101E-06 88.596 By MS/MS 1 0.86407 0.73487 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86407 0.73487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4338300 2192400 2145900 0 0 0 0 0 0 0 0 0 4338300 2192400 2145900 0 0 0 0 0 0 5618 1099 5851 28545 28713 28713 370 1 DYNASASTISPPSSMEEDKFSR NGFSEGSKTDATDGKDYNASASTISPPSSM TISPPSSMEEDKFSRSALRDAYCSEVKAST K D Y S R S 2 1 1 2 0 0 2 0 0 1 0 1 1 1 2 6 1 0 1 0 0 0 22 1 2418.0645 P46821 P46821 1199 1220 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.029518 13.592 By MS/MS 2 0.90601 0.85915 4.6123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90601 0.85915 4.6123 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1308000 672430 635600 0 0 0 0 0 0 0 0 0 1308000 672430 635600 0 0 0 0 0 0 5619 2347 5852 28546;28547 28714;28715;28716;28717 28717 4 DYNDADMAR DESTPPPRKKKKDIRDYNDADMARLLEQWE KKKDIRDYNDADMARLLEQWEKDDDIEEGD R D Y A R L 2 1 1 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 9 0 1069.4135 Q14696;H0YLI4 Q14696 57 65 MESDC2 LDLR chaperone MESD yes no 2 0.0044715 60.59 By MS/MS By MS/MS By MS/MS 1 1 1 1.0528 0.93111 14.535 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0886 1.0319 NaN 1 0 Median 1.0183 0.84016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520100 1831300 1688800 0 0 0 0 0 0 2670800 1380200 1290600 849310 451050 398250 0 0 0 0 0 0 5620 2895 5853 28548;28549;28550 28718;28719;28720;28721 28718 4 DYNEAYNYYTK AETFKEQGNAYYAKKDYNEAYNYYTKAIDM YAKKDYNEAYNYYTKAIDMCPKNASYYGNR K D Y T K A 1 0 2 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 4 0 0 0 11 0 1442.599 Q99615;K7ESP1;K7EIH8;K7EK03;K7ELJ8 Q99615 43 53 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0031616 50.353 By MS/MS By matching By matching 1 2 1 1.0949 0.94991 17.036 4 Median 1.2578 1.2026 NaN 1 0 Median 0.96168 0.85102 0.8742 2 0 Median NaN NaN NaN 0 0 Median 1.2091 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7692200 3585900 4106300 5332600 2488400 2844300 1776400 853690 922700 0 0 0 583200 243860 339340 0 0 0 0 0 0 5621 3759 5854 28551;28552;28553;28554 28722 28722 1 DYNHYFK KIRDWYQKQGPGPSRDYNHYFKTIEDLRDK KQGPGPSRDYNHYFKTIEDLRDKILGATID R D Y F K T 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 2 0 0 0 7 0 985.42938 CON__P19001 CON__P19001 129 135 yes yes 2 0.056103 38.238 By matching By MS/MS 1 1 1.2641 1.2069 17.885 2 Median 1.1303 1.0635 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4138 1.3696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16636000 7783500 8852300 5881500 2818100 3063400 0 0 0 10754000 4965500 5788900 0 0 0 0 0 0 0 0 0 + 5622 760 5855 28555;28556 28723 28723 1 DYNKYEEGINIHLAK RGCVNPMINIEQLWRDYNKYEEGINIHLAK DYNKYEEGINIHLAKKMIEDRSRDYMNARR R D Y A K K 1 0 2 1 0 0 2 1 1 2 1 2 0 0 0 0 0 0 2 0 0 0 15 1 1805.8948 Q12996;E9PLP8 Q12996 189 203 CSTF3 Cleavage stimulation factor subunit 3 yes no 3;4 0.00040285 41.378 By MS/MS By matching 2 1 1.4331 1.4 19.753 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2241 1.343 27.728 2 0 Median 1.4331 1.4 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88795000 40047000 48747000 0 0 0 0 0 0 87733000 39657000 48076000 1062400 390600 671770 0 0 0 0 0 0 5623 2777 5856 28557;28558;28559 28724;28725;28726;28727 28724 4 DYNVTANSK HGSLFLRTPKIVSGKDYNVTANSKLVIITA KIVSGKDYNVTANSKLVIITAGARQQEGES K D Y S K L 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 1 0 0 9 0 1010.4669 P00338;F5GYU2;F5GXY2;F5GXH2 P00338 82 90 LDHA L-lactate dehydrogenase A chain yes no 2 0.00055412 114.89 By MS/MS By MS/MS By matching 1 1 1 1.3166 1.1587 14.87 3 Median 1.3166 1.2122 NaN 1 0 Median 1.0925 0.91878 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3551 1.1587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21787000 9580500 12206000 12599000 5143100 7456300 8754500 4259600 4494900 0 0 0 433000 177870 255130 0 0 0 0 0 0 5624 1813 5857 28560;28561;28562 28728;28729;28730 28730 3 DYPVVSIEDPFDQDDWGAWQK ISPDQLADLYKSFIKDYPVVSIEDPFDQDD IEDPFDQDDWGAWQKFTASAGIQVVGDDLT K D Y Q K F 1 0 0 5 0 2 1 1 0 1 0 1 0 1 2 1 0 2 1 2 0 0 21 0 2509.1074 P06733;A0A2R8Y6G6 P06733 286 306 ENO1 Alpha-enolase yes no 2;3 3.5515E-06 45.28 By matching By MS/MS By matching 3 2 1 0.85626 0.81716 13.145 6 Median NaN NaN NaN 0 0 Median 0.86657 0.77514 7.7382 3 0 Median 0.84075 0.81716 1.0345 2 0 Median 1.2383 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18695000 9488400 9206800 0 0 0 992650 496340 496310 17569000 8945300 8623600 133570 46755 86818 0 0 0 0 0 0 5625 1873 5858 28563;28564;28565;28566;28567;28568 28731;28732;28733 28733 3 DYQDNKADVILK KVWINTSDIILVGLRDYQDNKADVILKYNA GLRDYQDNKADVILKYNADEARSLKAYGEL R D Y L K Y 1 0 1 3 0 1 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1420.7198 P47813;X6RAC9;O14602 P47813 83 94 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2;3 2.1903E-31 186.87 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 3 4 1 1.0396 0.93459 18.567 14 Median 0.86755 0.85957 11.284 2 0 Median 0.9187 0.80451 19.663 4 1 Median 1.1291 1.1255 30.702 3 1 Plateau 1.0815 0.94053 3.8445 4 0 Median NaN NaN NaN 0 0 Median 1.167 0.98431 NaN 1 0 Median 505730000 249520000 256210000 170340000 95882000 74456000 68767000 31300000 37467000 208930000 94967000 113970000 57336000 27205000 30130000 0 0 0 349180 161100 188070 5626 2355 5859 28569;28570;28571;28572;28573;28574;28575;28576;28577;28578;28579;28580;28581;28582;28583 28734;28735;28736;28737;28738;28739;28740;28741;28742;28743;28744;28745;28746;28747;28748;28749;28750 28743 17 DYQELMNTK DALQQAKEDLARLLRDYQELMNTKLALDLE LARLLRDYQELMNTKLALDLEIATYRTLLE R D Y T K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1140.5121 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 464 472 KRT1 Keratin, type II cytoskeletal 1 no no 2 9.5791E-36 186.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 11 8 14 5 7 0.033087 0.030333 127.25 47 Median 0.043375 0.039622 117.98 9 9 Median 0.04825 0.04086 111.14 9 9 Median 0.042563 0.041636 104.45 6 6 Median 0.030016 0.025247 188.04 12 12 Median 0.021978 0.02248 41.881 5 5 Median 0.021443 0.017676 83.361 6 6 Median 721340000 698770000 22570000 155610000 148710000 6903300 89396000 86012000 3383600 139490000 134720000 4775900 145400000 141450000 3951200 120060000 117020000 3042500 71381000 70868000 513090 + 5627 1848;735 5860;5861 28584;28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629;28630;28631;28632;28633;28634;28635;28636;28637;28638 28751;28752;28753;28754;28755;28756;28757;28758;28759;28760;28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772;28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785;28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796;28797;28798;28799;28800;28801;28802;28803;28804;28805;28806;28807;28808 28789 257 58 DYQELMNVK EALQQAKEDLARLLRDYQELMNVKLALDVE LARLLRDYQELMNVKLALDVEIATYRKLLE R D Y V K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1138.5329 CON__P35908;H0YID6;CON__P35908v2;P35908;CON__Q5XKE5;Q5XKE5 CON__P35908 468 476 KRT79;KRT2 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 2 0.00051325 107.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 6 3 2 0.088983 0.0861 107.14 26 Median 0.14348 0.13404 49.961 6 6 Median 0.081598 0.072643 95.57 4 4 Median 0.088704 0.096172 45.312 5 5 Median 0.087389 0.073942 147.07 6 6 Median 0.041869 0.04387 103.33 3 3 Plateau 0.16612 0.1388 84.267 2 2 Median 194400000 176930000 17475000 54823000 47656000 7167300 50093000 46273000 3819900 35945000 32722000 3222800 17455000 16033000 1422600 30913000 29879000 1034400 5172400 4364600 807810 + 5628 764;765;786 5862;5863 28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665 28809;28810;28811;28812;28813;28814;28815;28816;28817;28818;28819;28820;28821;28822;28823;28824;28825;28826;28827;28828;28829;28830;28831;28832;28833;28834;28835 28820 285 27 DYQGPLKEHEVTIFVR TNVAATFKGIVRAIRDYQGPLKEHEVTIFV YQGPLKEHEVTIFVRRGGPNYQEGLRVMGE R D Y V R R 0 1 0 1 0 1 2 1 1 1 1 1 0 1 1 0 1 0 1 2 0 0 16 1 1929.9949 P53396;K7EIE7 P53396 363 378 ACLY ATP-citrate synthase yes no 3 0.0029261 43.798 By MS/MS 1 0.97938 1.021 NaN 1 Median 0.97938 1.021 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16064000 7954000 8109800 16064000 7954000 8109800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5629 2467 5864 28666 28836 28836 1 DYRDAQEFAADVR HPMDLSTVKRKMENRDYRDAQEFAADVRLM NRDYRDAQEFAADVRLMFSNCYKYNPPDHD R D Y V R L 3 2 0 3 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 13 1 1554.7063 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2 H0Y6K2 413 425 BRD2 Bromodomain-containing protein 2 yes no 2;3 0.00019164 83.182 By MS/MS By MS/MS By matching 2 4 2 1.2454 1.2356 18.75 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92818 1.0296 24.368 2 0 Median NaN NaN NaN 0 0 Median 1.2454 1.3532 9.9198 3 1 Median 1.3063 1.1809 6.4033 2 0 Median 18465000 7656000 10809000 0 0 0 0 0 0 3421900 1693600 1728400 0 0 0 13764000 5516700 8247600 1279100 445690 833390 5630 279 5865 28667;28668;28669;28670;28671;28672;28673;28674 28837;28838;28839;28840 28839 4 DYSDHPSGGSYR PSRGYSDRDGYGRDRDYSDHPSGGSYRDSY RDRDYSDHPSGGSYRDSYESYGNSRSAPPT R D Y Y R D 0 1 0 2 0 0 0 2 1 0 0 0 0 0 1 3 0 0 2 0 0 0 12 0 1339.5429 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 271 282 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.056138 13.679 By matching By MS/MS By matching 1 1 1 1.0878 1.0456 27.456 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0878 1.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71041 0.71503 NaN 1 0 Median 1.4174 1.2188 NaN 1 0 Median 2735900 1330000 1406000 0 0 0 0 0 0 341110 141690 199420 0 0 0 1703600 988840 714760 691220 199420 491800 5631 2273;3632 5866 28675;28676;28677 28841 28841 1 DYSGQGVVK CSMDDTVRYTSLMLRDYSGQGVVKLDVQPK TSLMLRDYSGQGVVKLDVQPKCVAVGPGGY R D Y V K L 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 1 2 0 0 9 0 951.46616 O75083 O75083 397 405 WDR1 WD repeat-containing protein 1 yes yes 2 0.039166 46.426 By MS/MS 1 1.3436 1.1327 NaN 1 Median NaN NaN NaN 0 0 Median 1.3436 1.1327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6938000 2537400 4400600 0 0 0 6938000 2537400 4400600 0 0 0 0 0 0 0 0 0 0 0 0 5632 1643 5867 28678 28842 28842 1 DYSHYYTTIQDLR KIRDWYQKQGPGPSRDYSHYYTTIQDLRDK SRDYSHYYTTIQDLRDKILGATIENSRIVL R D Y L R D 0 1 0 2 0 1 0 0 1 1 1 0 0 0 0 1 2 0 3 0 0 0 13 0 1673.7686 CON__P08727;P08727 CON__P08727 126 138 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 5.735E-07 106.29 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 8 3 3 6 1.0658 1.0043 28.418 23 Median 0.94817 0.94607 NaN 1 0 Median 1.4116 1.2087 59.335 2 0 Median 0.9915 1.0465 35.522 8 0 Median 1.2344 1.0836 11.625 3 0 Median 1.0189 1.0309 34.271 3 1 Median 1.12 0.89432 13.122 6 0 Median 446920000 222780000 224140000 14419000 7510300 6909000 27782000 11840000 15942000 320160000 162970000 157190000 34060000 15534000 18526000 25472000 12813000 12660000 25030000 12118000 12912000 + 5633 752 5868 28679;28680;28681;28682;28683;28684;28685;28686;28687;28688;28689;28690;28691;28692;28693;28694;28695;28696;28697;28698;28699;28700;28701 28843;28844;28845;28846;28847;28848;28849;28850;28851;28852;28853;28854;28855;28856;28857;28858;28859;28860;28861 28847 19 DYSHYYTTIQDLRDK KIRDWYQKQGPGPSRDYSHYYTTIQDLRDK DYSHYYTTIQDLRDKILGATIENSRIVLQI R D Y D K I 0 1 0 3 0 1 0 0 1 1 1 1 0 0 0 1 2 0 3 0 0 0 15 1 1916.8905 CON__P08727;P08727 CON__P08727 126 140 KRT19 Keratin, type I cytoskeletal 19 yes no 3 0.00011189 58.071 By MS/MS By MS/MS By matching 1 2 1 1.1275 1.1948 15.215 4 Median 0.92222 0.98818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1275 1.1948 12.684 2 0 Median 1.4998 1.3667 NaN 1 0 Median 47198000 22367000 24831000 11885000 6445800 5439100 0 0 0 0 0 0 0 0 0 33743000 15289000 18453000 1570400 631530 938910 + 5634 752 5869 28702;28703;28704;28705 28862;28863;28864;28865;28866;28867 28867 6 DYSLLPLLAAAPQVGEK NSSTIIQNPVETPKKDYSLLPLLAAAPQVG SLLPLLAAAPQVGEKIAFKLLELTSSYSPD K D Y E K I 3 0 0 1 0 1 1 1 0 0 4 1 0 0 2 1 0 0 1 1 0 0 17 0 1783.972 P38432 P38432 460 476 COIL Coilin yes yes 2 0.0037324 32.946 By matching By MS/MS 1 3 0.77313 0.75153 5.4933 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79706 0.69694 NaN 1 0 Median 0.77279 0.76383 3.5307 3 0 Median NaN NaN NaN 0 0 Median 1231800 641070 590690 0 0 0 0 0 0 0 0 0 123440 64704 58735 1108300 576360 531950 0 0 0 5635 2274 5870 28706;28707;28708;28709 28868 28868 1 DYSQYYR KIRDWYQRQAPGPARDYSQYYRTIEELQNK RQAPGPARDYSQYYRTIEELQNKILTATVD R D Y Y R T 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 7 0 993.41921 CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 130 136 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0026877 118.06 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1.2795 1.2603 39.194 7 Median 1.2795 1.2767 NaN 1 0 Median 0.99504 0.84581 NaN 1 0 Median 1.62 1.5982 NaN 1 0 Median 0.7587 0.65318 NaN 1 0 Median 1.5098 1.5163 NaN 1 0 Median 1.0653 0.88854 49.436 2 0 Median 50649000 24932000 25717000 2460500 955430 1505100 4233700 1905800 2327900 11439000 4071200 7368200 15169000 9180200 5989200 5805800 2294300 3511400 11540000 6525400 5014900 + 5636 768 5871 28710;28711;28712;28713;28714;28715;28716 28869;28870;28871;28872;28873 28872 5 DYSVTANSK HGSLFLQTPKIVADKDYSVTANSKIVVVTA KIVADKDYSVTANSKIVVVTAGVRQQEGES K D Y S K I 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 2 1 0 1 1 0 0 9 0 983.45599 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 83 91 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2 0.0049104 59.245 By MS/MS By MS/MS 1 1 1.2301 1.1121 8.1713 2 Median 1.2084 1.1782 NaN 1 0 Median 1.2521 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7094800 3166200 3928600 2695200 1156800 1538400 4399600 2009400 2390200 0 0 0 0 0 0 0 0 0 0 0 0 5637 1880 5872 28717;28718 28874;28875;28876;28877 28875 4 DYTQMNELQR VLLIENVASLGTTVRDYTQMNELQRRLGPR GTTVRDYTQMNELQRRLGPRGLVVLGFPCN R D Y Q R R 0 1 1 1 0 2 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1296.5768 A0A087WUQ6;P07203;A0A494C1C9;A0A494C118 A0A087WUQ6 54 63 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 2 0.00094065 76.827 By MS/MS 2 2.0249 1.7023 1.9276 2 Median NaN NaN NaN 0 0 Median 2.0249 1.7023 1.9276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2896500 949730 1946700 0 0 0 2896500 949730 1946700 0 0 0 0 0 0 0 0 0 0 0 0 5638 33 5873 28719;28720 28878;28879;28880 28879 2 DYTSGAMLTGELKK TFFLEDDDKLEQIRKDYTSGAMLTGELKKA KDYTSGAMLTGELKKALIEVLQPLIAEHQA K D Y K K A 1 0 0 1 0 0 1 2 0 0 2 2 1 0 0 1 2 0 1 0 0 0 14 1 1512.7494 P23381 P23381 419 432 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 2;3 1.9822E-05 87.363 By MS/MS By matching 2 1 1.2886 1.2131 8.0754 3 Median 1.2354 1.1818 11.218 2 0 Median 1.2886 1.2131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21367000 10837000 10530000 19615000 10008000 9606800 1752500 829190 923300 0 0 0 0 0 0 0 0 0 0 0 0 5639 2111 5874 28721;28722;28723 28881;28882 28881 2 DYTYEELLNR SFSNQTGPAWAGSERDYTYEELLNRVFNIM AGSERDYTYEELLNRVFNIMREKNPDMVAG R D Y N R V 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1314.6092 P20042 P20042 173 182 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0004183 121.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 4 3 1.1889 1.0542 8.0393 11 Median 1.1621 1.1096 NaN 1 0 Median 1.1572 0.98152 NaN 1 0 Median 1.1731 1.203 0.85527 2 1 Median 1.1835 1.0277 3.5179 4 2 Median NaN NaN NaN 0 0 Median 1.1918 1.0219 8.8472 3 0 Median 146320000 66534000 79784000 11329000 4983200 6346100 4861700 2198100 2663600 53067000 23372000 29695000 74538000 34899000 39639000 0 0 0 2522300 1082200 1440100 5640 2072 5875 28724;28725;28726;28727;28728;28729;28730;28731;28732;28733;28734 28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894 28883 12 DYTYRDYGHSSSR YPSSRDTRDYAPPPRDYTYRDYGHSSSRDD PRDYTYRDYGHSSSRDDYPSRGYSDRDGYG R D Y S R D 0 2 0 2 0 0 0 1 1 0 0 0 0 0 0 3 1 0 3 0 0 0 13 1 1605.6808 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 240 252 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.034507 20.236 By MS/MS 2 0.87364 0.93233 2.5233 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87364 0.93233 2.5233 2 0 Median NaN NaN NaN 0 0 Median 2864800 1353700 1511100 0 0 0 0 0 0 0 0 0 0 0 0 2864800 1353700 1511100 0 0 0 5641 2273;3632 5876 28735;28736 28895 28895 1 DYTYRDYGHSSSRDDYPSR YPSSRDTRDYAPPPRDYTYRDYGHSSSRDD RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS R D Y S R G 0 3 0 4 0 0 0 1 1 0 0 0 0 0 1 4 1 0 4 0 0 0 19 2 2338.9839 P38159;H3BT71;H0Y6E7;H3BUY5;Q96E39 P38159 240 258 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 4 0.00079037 29.384 By MS/MS By matching 1 1 0.96975 1.145 11.107 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94005 1.2386 NaN 1 0 Median 1.0004 1.0585 NaN 1 0 Median 20549000 9691000 10858000 0 0 0 0 0 0 0 0 0 0 0 0 17592000 8163600 9428500 2956500 1527400 1429200 5642 2273;3632 5877 28737;28738 28896 28896 1 DYVAPTANLDQK AAERFAKERRLRIWRDYVAPTANLDQKDKQ IWRDYVAPTANLDQKDKQFVAKVMQVLNAD R D Y Q K D 2 0 1 2 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.6514 Q7KZF4 Q7KZF4 328 339 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 2.3932E-10 133.23 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.7219 1.6314 45.696 4 Linear 1.0867 1.0521 NaN 1 0 Median 1.6828 1.4212 NaN 1 0 Median 0.92983 1.0136 NaN 1 1 Median 0.54876 0.48491 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56665000 29279000 27386000 10722000 5018800 5703500 15599000 5580400 10019000 12081000 6038600 6042100 18262000 12641000 5621500 0 0 0 0 0 0 5643 3214 5878 28739;28740;28741;28742 28897;28898;28899;28900;28901 28901 5 DYVAPTANLDQKDK AAERFAKERRLRIWRDYVAPTANLDQKDKQ RDYVAPTANLDQKDKQFVAKVMQVLNADAI R D Y D K Q 2 0 1 3 0 1 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 14 1 1576.7733 Q7KZF4 Q7KZF4 328 341 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.00061668 45.864 By MS/MS By matching 1 1 0.87473 0.96101 5.4444 2 Median 0.94703 0.99873 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80794 0.92472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5750500 2710100 3040500 3441500 1541000 1900600 0 0 0 2309000 1169100 1139900 0 0 0 0 0 0 0 0 0 5644 3214 5879 28743;28744 28902;28903 28902 2 DYVAPTANLDQKDKQFVAK AAERFAKERRLRIWRDYVAPTANLDQKDKQ PTANLDQKDKQFVAKVMQVLNADAIVVKLN R D Y A K V 3 0 1 3 0 2 0 0 0 0 1 3 0 1 1 0 1 0 1 2 0 0 19 2 2150.1008 Q7KZF4 Q7KZF4 328 346 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.0075885 23.895 By MS/MS 1 0.37915 0.39744 NaN 1 Median 0.37915 0.39744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10859000 6863000 3996400 10859000 6863000 3996400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5645 3214 5880 28745 28904 28904 1 DYVAQFEASALGK DFATVYVEAIKDSGRDYVAQFEASALGKQL GRDYVAQFEASALGKQLNLKLLDNWDTLAS R D Y G K Q 3 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 13 0 1397.6827 CON__P15497 CON__P15497 51 63 yes yes 2 0.00011733 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.016775 0.015688 66.246 4 Median 0.018072 0.016799 NaN 1 1 Median 0.06521 0.055652 NaN 1 1 Median 0.015572 0.014651 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.013322 0.013616 NaN 1 1 Median NaN NaN NaN 0 0 Median 55143000 54175000 967820 18207000 17889000 317820 1253400 1188000 65414 6766300 6687300 78920 0 0 0 28916000 28410000 505670 0 0 0 + 5646 758 5881 28746;28747;28748;28749;28750 28905;28906;28907;28908;28909;28910 28907 6 DYVDLFR SGEVRTGKWKVPTYKDYVDLFRHLLSSDQM KWKVPTYKDYVDLFRHLLSSDQMMDSILAD K D Y F R H 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 926.44978 P78527 P78527 526 532 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.016985 67.035 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 3 2 1 1.0375 1.0397 15.873 11 Median 1.0124 1.0083 4.3302 2 0 Median NaN NaN NaN 0 0 Median 0.96586 1.0179 2.8445 3 0 Plateau 1.5217 1.3255 3.295 3 0 Median 0.92428 0.97375 19.916 2 0 Median 1.5044 1.2332 NaN 1 0 Median 42113000 20577000 21536000 8512500 4097900 4414700 0 0 0 28618000 14232000 14386000 2256700 909610 1347000 2545900 1272000 1273900 180100 65521 114580 5647 2647 5882 28751;28752;28753;28754;28755;28756;28757;28758;28759;28760;28761 28911;28912;28913;28914;28915 28911 5 DYVIEDDVNMAIR SMIRMAEAHARIHLRDYVIEDDVNMAIRVM LRDYVIEDDVNMAIRVMLESFIDTQKFSVM R D Y I R V 1 1 1 3 0 0 1 0 0 2 0 0 1 0 0 0 0 0 1 2 0 0 13 0 1551.7239 P49736;H0Y8E6 P49736 784 796 MCM2 DNA replication licensing factor MCM2 yes no 2 0.0028084 63.283 By MS/MS By MS/MS By matching 1 1 1 1.3916 1.3685 28.1 3 Plateau 1.3916 1.3685 NaN 1 1 Median 1.2748 1.1283 NaN 1 0 Median 0.73436 0.78669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673300 1547000 2126400 2355200 949100 1406100 674880 288510 386370 643240 309340 333900 0 0 0 0 0 0 0 0 0 5648 2393 5883 28762;28763;28764 28916;28917 28916 2 DYYFALAHTVR LHFTLVKDRNVATTRDYYFALAHTVRDHLV ATTRDYYFALAHTVRDHLVGRWIRTQQHYY R D Y V R D 2 1 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 2 1 0 0 11 0 1354.667 P06737;E9PK47;P11217 P06737 51 61 PYGL;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, muscle form no no 2;3 0.00020098 103.7 By MS/MS By matching By MS/MS 3 1 1 1.0672 1.0523 26.985 5 Median 1.0672 1.0523 12.58 3 0 Median 1.3382 1.2119 NaN 1 0 Median 0.60789 0.64955 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17343000 7761500 9581200 14956000 6409200 8546600 406520 178800 227720 1980400 1173500 806930 0 0 0 0 0 0 0 0 0 5649 1874;1957 5884 28765;28766;28767;28768;28769 28918;28919;28920;28921;28922 28919 5 DYYINIR DRFNLPRRSTDFTSRDYYINIRKALVTGYF RSTDFTSRDYYINIRKALVTGYFMQVAHLE R D Y I R K 0 1 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 7 0 955.47633 O43143 O43143 684 690 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0026202 106.84 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 3 1 1.1628 1.1382 15.012 8 Median 1.5072 1.4262 NaN 1 0 Median 1.1731 1.0296 9.6596 2 0 Median 1.1561 1.2304 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1695 1.1751 16.842 3 0 Plateau 1.2558 1.0583 NaN 1 0 Median 38997000 17913000 21084000 9175600 4070000 5105600 653840 286500 367350 7101200 3312000 3789300 0 0 0 20525000 9590700 10934000 1541700 653640 888050 5650 1553 5885 28770;28771;28772;28773;28774;28775;28776;28777 28923;28924;28925;28926;28927;28928;28929 28928 7 DYYINIRK DRFNLPRRSTDFTSRDYYINIRKALVTGYF STDFTSRDYYINIRKALVTGYFMQVAHLER R D Y R K A 0 1 1 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 0 8 1 1083.5713 O43143 O43143 684 691 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0323 44.692 By MS/MS 1 1.0282 1.0875 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0282 1.0875 NaN 1 0 Median NaN NaN NaN 0 0 Median 5381100 2533400 2847700 0 0 0 0 0 0 0 0 0 0 0 0 5381100 2533400 2847700 0 0 0 5651 1553 5886 28778 28930 28930 1 EAAAALVEEETR ALPYFDQGYEAPGVREAAAALVEEETRRYR GVREAAAALVEEETRRYRPTKNYLSYLTAP R E A T R R 4 1 0 0 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1287.6307 O75934 O75934 30 41 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 7.8434E-06 129.16 By MS/MS 1 0.85378 0.81902 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85378 0.81902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5939800 3189300 2750500 0 0 0 0 0 0 5939800 3189300 2750500 0 0 0 0 0 0 0 0 0 5652 1707 5887 28779 28931;28932 28932 2 EAAAALVEEETRR ALPYFDQGYEAPGVREAAAALVEEETRRYR VREAAAALVEEETRRYRPTKNYLSYLTAPD R E A R R Y 4 2 0 0 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 13 1 1443.7318 O75934 O75934 30 42 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3 1.1573E-53 237.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 3 1.1564 1.0126 19.779 10 Median 1.3225 1.4136 NaN 1 0 Median 1.1722 0.99555 NaN 1 0 Median 0.8703 0.90237 4.9976 2 0 Median 1.1661 1.0441 26.896 3 0 Median NaN NaN NaN 0 0 Median 1.1565 1.0303 15.167 3 0 Plateau 100940000 48651000 52285000 9612700 4089900 5522700 5451800 2442600 3009200 51939000 26706000 25233000 9982400 4474400 5508000 0 0 0 23950000 10938000 13012000 5653 1707 5888 28780;28781;28782;28783;28784;28785;28786;28787;28788;28789 28933;28934;28935;28936;28937;28938;28939;28940;28941;28942;28943;28944;28945;28946;28947 28935 15 EAAASGLPLMVIIHK FGDHIHWRTLEDGKKEAAASGLPLMVIIHK EAAASGLPLMVIIHKSWCGACKALKPKFAE K E A H K S 3 0 0 0 0 0 1 1 1 2 2 1 1 0 1 1 0 0 0 1 0 0 15 0 1548.8698 O95881 O95881 49 63 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 2;3 0.00032492 52.278 By MS/MS By matching By matching 2 1 1 1.1024 1.0013 10.452 4 Median 1.0316 0.9747 4.6732 2 0 Median 1.1399 0.99518 NaN 1 0 Median 1.1873 1.2 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19808000 9464400 10344000 18629000 8905900 9723100 162940 68772 94172 1016100 489770 526330 0 0 0 0 0 0 0 0 0 5654 1802 5889 28790;28791;28792;28793 28948;28949;28950;28951;28952;28953 28953 6 EAAASLSLTLQK KILTHVAEMQGKSAREAAASLSLTLQKEGV SAREAAASLSLTLQKEGVIGVTEEQVHHIV R E A Q K E 3 0 0 0 0 1 1 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 12 0 1230.682 Q9UH99 Q9UH99 506 517 SUN2 SUN domain-containing protein 2 yes yes 2 0.0026723 48.091 By MS/MS By matching By matching 1 1 1 0.96346 1.0036 26.792 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96346 1.0036 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72989 0.75348 NaN 1 0 Median 1.5404 1.287 NaN 1 0 Median 9123400 4985600 4137700 0 0 0 0 0 0 6195000 3399300 2795600 0 0 0 2436100 1388700 1047400 492310 197590 294720 5655 4271 5890 28794;28795;28796 28954 28954 1 EAAATEIR PHTAWYSEQASLEMREAAATEIRRAITGRI QASLEMREAAATEIRRAITGRIPESLRNCV R E A I R R 3 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 859.43995 P56545 P56545 335 342 CTBP2 C-terminal-binding protein 2 yes yes 2 0.036811 37.558 By MS/MS 1 0.95644 0.94448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95644 0.94448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1050100 521430 528650 0 0 0 0 0 0 1050100 521430 528650 0 0 0 0 0 0 0 0 0 5656 2514 5891 28797 28955 28955 1 EAAENSLVAYK YHRYLAEFATGNDRKEAAENSLVAYKAASD NDRKEAAENSLVAYKAASDIAMTELPPTHP K E A Y K A 3 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1193.5928 P62258;K7EM20 P62258 143 153 YWHAE 14-3-3 protein epsilon yes no 2 1.1416E-12 148.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1 1.1183 0.95414 50.398 8 Median 1.0641 0.95992 NaN 1 0 Median 1.1229 0.931 84.312 3 1 Median 0.9726 0.91274 NaN 1 0 Median 1.1364 0.94839 NaN 1 0 Median 1.0326 1.0529 NaN 1 1 Median 1.4148 1.1546 NaN 1 0 Median 482680000 227230000 255450000 240330000 112490000 127840000 115680000 54322000 61356000 81000000 40030000 40970000 27816000 12459000 15356000 14173000 6323200 7849700 3677100 1602100 2074900 5657 2576 5892 28798;28799;28800;28801;28802;28803;28804;28805 28956;28957;28958;28959;28960;28961;28962;28963;28964;28965;28966 28962 11 EAAEQDVEK RANARLFGIRAKRAKEAAEQDVEKKK____ RAKRAKEAAEQDVEKKK_____________ K E A E K K 2 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 9 0 1017.4615 P26373;J3KS98 P26373 201 209 RPL13 60S ribosomal protein L13 yes no 2 0.00069823 103.83 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0544 0.97419 6.4776 5 Median 1.0281 0.99936 3.6077 2 0 Median 1.0774 0.9208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1358 0.91427 NaN 1 0 Median 1.0247 1.0593 NaN 1 0 Median NaN NaN NaN 0 0 Median 5673000 2809000 2864000 3887300 1934700 1952500 1090300 527460 562850 0 0 0 129500 60963 68538 565900 285830 280070 0 0 0 5658 2144 5893 28806;28807;28808;28809;28810 28967;28968;28969;28970;28971;28972;28973;28974 28967 8 EAAEVLQNNR QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ DPLNKEAAEVLQNNRRLFEQNVQRSMRGGY K E A N R R 2 1 2 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1142.568 P61081;M0QX69 P61081 148 157 UBE2M NEDD8-conjugating enzyme Ubc12 yes no 2 0.0003634 119.41 By MS/MS By MS/MS By MS/MS 1 1 1 1.07 0.88203 16.547 3 Median NaN NaN NaN 0 0 Median 0.93423 0.77632 NaN 1 0 Median 1.1217 1.078 NaN 1 0 Median 1.07 0.88203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10595000 5082100 5512900 0 0 0 1488100 760320 727780 8403400 3973100 4430300 703400 348590 354810 0 0 0 0 0 0 5659 2542 5894 28811;28812;28813 28975;28976;28977;28978;28979;28980 28975 6 EAAEVLQNNRR QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ PLNKEAAEVLQNNRRLFEQNVQRSMRGGYI K E A R R L 2 2 2 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 1 1298.6691 P61081;M0QX69 P61081 148 158 UBE2M NEDD8-conjugating enzyme Ubc12 yes no 3 0.005585 33.866 By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0723 1.0871 6.7688 5 Median 1.0249 1.0848 7.7839 2 0 Median 1.3324 1.2189 NaN 1 0 Median 1.0485 1.0871 NaN 1 0 Median 1.1842 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5527100 2554100 2973100 1247600 600000 647560 1353500 575830 777690 2490200 1178800 1311400 435910 199450 236460 0 0 0 0 0 0 5660 2542 5895 28814;28815;28816;28817;28818 28981;28982;28983;28984;28985 28981 5 EAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF K E A E R V 3 1 0 2 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1250.5415 Q09028;E9PNS6;E9PNS2;E9PIC4 Q09028 5 15 RBBP4 Histone-binding protein RBBP4 yes no 2 0.00014526 114.5 By MS/MS By MS/MS By matching 1 2 1 1.0136 1.0083 18.241 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97454 0.95328 NaN 1 0 Median 1.0776 0.92689 3.1502 2 0 Median NaN NaN NaN 0 0 Median 0.80382 0.65143 NaN 1 0 Median 45710000 21731000 23979000 0 0 0 0 0 0 23738000 11434000 12304000 21299000 9966000 11333000 0 0 0 672580 330720 341860 5661 2746 5896 28819;28820;28821;28822 28986;28987;28988;28989;28990 28988 5 EAAFSLAEAK ______________________________ GEVMREAAFSLAEAKFTAGDFSTTVIQNVN R E A A K F 4 0 0 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1035.5237 G3V2S6;Q9Y5K8;H0YJS0;G3V559;H0YJ55;G3V5S7;G3V3T8 G3V2S6 9 18 ATP6V1D V-type proton ATPase subunit D yes no 2 0.0012653 85.731 By MS/MS By MS/MS 1 1 0.50029 0.44282 103.51 2 Median 0.98387 0.92068 NaN 1 1 Median 0.25439 0.21298 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17220000 12250000 4970700 7476200 3644400 3831700 9744200 8605300 1138900 0 0 0 0 0 0 0 0 0 0 0 0 5662 1108 5897 28823;28824 28991;28992 28991 2 EAAGEGPALYEDPPDQK PEAKKSKTAAKKNDKEAAGEGPALYEDPPD AGEGPALYEDPPDQKTSPSGKPATLKICSW K E A Q K T 3 0 0 2 0 1 3 2 0 0 1 1 0 0 3 0 0 0 1 0 0 0 17 0 1785.8057 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V5M0;G3V359;G3V3Y6 G3V3M6 36 52 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.00028514 46.069 By MS/MS By matching 1 1 0.93051 0.8385 65.559 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54774 0.52744 NaN 1 0 Median 1.5808 1.333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26037000 14055000 11982000 0 0 0 0 0 0 16503000 10055000 6448100 9533700 3999700 5534000 0 0 0 0 0 0 5663 1112 5898 28825;28826 28993;28994;28995 28994 3 EAAGTTAAAGTGGATEQPPR ______________________________ TAAAGTGGATEQPPRHREHKKHKHRSGGSG K E A P R H 6 1 0 0 0 1 2 4 0 0 0 0 0 0 2 0 4 0 0 0 0 0 20 0 1812.8602 O43290;E9PQI8 O43290 12 31 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 4.8868E-06 49.929 By matching By MS/MS 1 1 0.67459 0.58601 31.985 2 Median NaN NaN NaN 0 0 Median 0.52882 0.46739 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86055 0.73473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1722600 1004700 717850 0 0 0 810410 500780 309640 0 0 0 912160 503950 408210 0 0 0 0 0 0 5664 1563 5899 28827;28828 28996;28997 28997 2 EAAIVDPVQPQK ______________________________ ______________________________ K E A Q K V 2 0 0 1 0 2 1 0 0 1 0 1 0 0 2 0 0 0 0 2 0 0 12 0 1293.6929 H3BPK3;Q16775;H3BPQ4;H3BQW8 H3BPK3 3 14 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 2 0.028681 28.958 By MS/MS 1 0.73702 0.69569 NaN 1 Median 0.73702 0.69569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2787600 1514000 1273600 2787600 1514000 1273600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5665 1224 5900 28829 28998 28998 1 EAAIWELEER ERECLNNKQQLMRAREAAIWELEERHLQEK LMRAREAAIWELEERHLQEKHQLLKQQLKD R E A E R H 2 1 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 10 0 1244.6037 Q9H2G2 Q9H2G2 1005 1014 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.00039083 122.13 By MS/MS By MS/MS 1 1 0.89257 0.79907 27.912 2 Median 1.0352 0.97341 NaN 1 0 Median 0.76961 0.65595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19047000 9873000 9173900 9110900 4180400 4930500 9936000 5692600 4243400 0 0 0 0 0 0 0 0 0 0 0 0 5666 3942 5901 28830;28831 28999;29000;29001;29002 29001 4 EAALAEVADEK GKEADAEANHREAGKEAALAEVADEKMLSG EAGKEAALAEVADEKMLSGLTKDLQRSLPP K E A E K M 4 0 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1144.5612 E9PHA2;Q15003;H7C415 E9PHA2 664 674 NCAPH Condensin complex subunit 2 yes no 2 0.00014702 112.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0914 0.94537 12.206 4 Linear 1.1129 1.0737 NaN 1 0 Median 0.95743 0.84365 NaN 1 0 Median 0.93856 1.0326 NaN 1 1 Median 0.9982 0.86554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12620000 6535400 6084600 3330700 1553200 1777500 2734200 1409600 1324500 3737500 2208200 1529300 2817700 1364400 1453200 0 0 0 0 0 0 5667 929 5902 28832;28833;28834;28835 29003;29004;29005;29006;29007 29007 5 EAALEPSMEK TRIGIRRGRTGQELKEAALEPSMEKIFKID GQELKEAALEPSMEKIFKIDQMGRWFVAGG K E A E K I 2 0 0 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 10 0 1103.5169 Q9H3K2 Q9H3K2 64 73 GHITM Growth hormone-inducible transmembrane protein yes yes 2 0.00041706 75.571 By matching By MS/MS 1 2 1.0362 0.91945 10.092 3 Median 0.79314 0.78741 NaN 1 0 Median 1.0526 0.93541 2.4339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23644000 11455000 12190000 3622000 1871800 1750200 20023000 9583100 10439000 0 0 0 0 0 0 0 0 0 0 0 0 5668 3954 5903 28836;28837;28838 29008;29009;29010 29008 3 EAALGAGFSDK FGTVIQEVKTSNVAREAALGAGFSDKTPAH NVAREAALGAGFSDKTPAHTVTMACISANQ R E A D K T 3 0 0 1 0 0 1 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1064.5138 P55084;F5GZQ3;B5MD38;C9JEY0;C9JE81 P55084 118 128 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0020677 78.655 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.1537 0.86136 127.25 5 Median 0.13263 0.12697 NaN 1 0 Median 0.1426 0.13362 NaN 1 0 Median 1.7186 1.6523 NaN 1 1 Median 1.1537 0.86136 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7402 1.4507 NaN 1 0 Median 41295000 23422000 17874000 8122600 6810300 1312400 9038700 7955000 1083700 21538000 7455800 14083000 377470 199550 177930 0 0 0 2218200 1001300 1216900 5669 2496 5904 28839;28840;28841;28842;28843 29011;29012 29011 2 EAALILGVSPTANK GGYYRGGFEPKMTKREAALILGVSPTANKG REAALILGVSPTANKGKIRDAHRRIMLLNH R E A N K G 3 0 1 0 0 0 1 1 0 1 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1382.7769 Q96DA6 Q96DA6 62 75 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes yes 2 4.5713E-08 150.15 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.96598 0.94972 11.242 4 Median 0.88183 0.79503 NaN 1 0 Median 1.2199 1.0028 NaN 1 0 Median 1.0582 1.01 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83385 0.89947 NaN 1 0 Median NaN NaN NaN 0 0 Median 95455000 46621000 48835000 49313000 25536000 23778000 22311000 9843600 12467000 16751000 7677900 9073400 0 0 0 7080400 3563800 3516600 0 0 0 5670 3625 5905 28844;28845;28846;28847 29013;29014;29015;29016;29017;29018;29019;29020;29021 29013 9 EAALPPVSPLK SLTEDRDRGRDAVKREAALPPVSPLKAALS AVKREAALPPVSPLKAALSEEELEKKSKAI R E A L K A 2 0 0 0 0 0 1 0 0 0 2 1 0 0 3 1 0 0 0 1 0 0 11 0 1120.6492 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1061 1071 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00016036 81.525 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 0.67185 0.62714 39.493 8 Median 0.91131 0.93023 40.51 2 0 Median 0.57292 0.49095 35.078 3 0 Median NaN NaN NaN 0 0 Median 0.79362 0.70713 32.225 2 0 Median NaN NaN NaN 0 0 Median 0.44319 0.38054 NaN 1 1 Median 39288000 19858000 19430000 27989000 13167000 14822000 8275400 4908900 3366500 0 0 0 2174300 1178800 995510 0 0 0 849330 602790 246540 5671 894 5906 28848;28849;28850;28851;28852;28853;28854;28855 29022;29023;29024;29025;29026;29027;29028 29022 7 EAALSTALSEK AQARLKDLEALLNSKEAALSTALSEKRTLE LNSKEAALSTALSEKRTLEGELHDLRGQVA K E A E K R 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1118.5819 P02545;H0YAB0;Q3BDU5 P02545 145 155 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00013559 102.06 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 6 1.2675 1.1269 19.458 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4094 1.3558 17.596 3 0 Plateau 1.5983 1.3926 26.769 2 0 Median 0.96855 0.9551 16.092 4 0 Median 1.3824 1.1351 18.8 6 0 Median 366820000 163580000 203240000 0 0 0 0 0 0 174660000 79249000 95412000 56720000 21280000 35440000 87861000 43060000 44801000 47578000 19990000 27587000 5672 1834;3010 5907 28856;28857;28858;28859;28860;28861;28862;28863;28864;28865;28866;28867;28868;28869;28870 29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053 29036 25 EAALSTALSEKR AQARLKDLEALLNSKEAALSTALSEKRTLE NSKEAALSTALSEKRTLEGELHDLRGQVAK K E A K R T 3 1 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 12 1 1274.683 P02545;H0YAB0;Q3BDU5 P02545 145 156 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 3.3005E-06 166.19 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 11 7 1.0495 1.0989 20.115 26 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0911 1.1892 10.575 4 0 Median 1.7927 1.6778 25.248 4 0 Median 0.95638 1.0524 5.8537 11 2 Median 1.3394 1.1712 14.488 7 2 Median 611960000 282490000 329470000 0 0 0 0 0 0 65375000 30979000 34396000 29327000 9174300 20153000 382490000 187780000 194720000 134760000 54557000 80207000 5673 1834;3010 5908 28871;28872;28873;28874;28875;28876;28877;28878;28879;28880;28881;28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896 29054;29055;29056;29057;29058;29059;29060;29061;29062;29063;29064;29065;29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076;29077;29078;29079;29080;29081;29082;29083;29084;29085;29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098 29069 45 EAALTSEEVGADLEQVEVLQK LFREANELQQWINEKEAALTSEEVGADLEQ EEVGADLEQVEVLQKKFDDFQKDLKANESR K E A Q K K 3 0 0 1 0 2 5 1 0 0 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2257.1325 A0A0D9SF54;Q13813 Q13813 1111 1131 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 7.77E-12 78.763 By MS/MS By matching By MS/MS By matching By matching 3 2 3 3 1 1.0442 0.99626 29.307 12 Median 1.3336 1.3161 16.01 3 0 Median 1.1939 1.0253 1.2997 2 0 Median 0.9033 0.99672 26.774 3 0 Plateau 1.0506 0.95051 3.6326 3 0 Plateau NaN NaN NaN 0 0 Median 0.61627 0.53846 NaN 1 0 Median 33849000 16383000 17466000 7822300 3266000 4556200 2871100 1360500 1510600 22180000 11242000 10939000 865510 447570 417940 0 0 0 109940 67014 42924 5674 264;2838 5909 28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907;28908 29099;29100;29101;29102;29103;29104;29105 29101 7 EAALVQQEEEK RLARVNEQRMKAAEKEAALVQQEEEKAEQR AAEKEAALVQQEEEKAEQRKRARAEKKALK K E A E K A 2 0 0 0 0 2 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1272.6198 A0A499FI31;Q15020 A0A499FI31 605 615 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.00016746 91.584 By MS/MS 1 1.2793 1.1221 NaN 1 Median NaN NaN NaN 0 0 Median 1.2793 1.1221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2311700 949180 1362500 0 0 0 2311700 949180 1362500 0 0 0 0 0 0 0 0 0 0 0 0 5675 473 5910 28909 29106;29107 29106 2 EAALVQQEEEKAEQR RLARVNEQRMKAAEKEAALVQQEEEKAEQR EAALVQQEEEKAEQRKRARAEKKALKKKKK K E A Q R K 3 1 0 0 0 3 5 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1756.8592 A0A499FI31;Q15020 A0A499FI31 605 619 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 8.8794E-07 81.311 By MS/MS By MS/MS By MS/MS 1 1 2 1.1924 1.3511 25.081 4 Median 0.88428 0.92091 NaN 1 0 Median 1.8092 1.6745 NaN 1 1 Median 1.1924 1.3511 5.3368 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39141000 16078000 23064000 8277800 4221900 4055900 14624000 5243500 9380400 16240000 6612200 9627400 0 0 0 0 0 0 0 0 0 5676 473 5911 28910;28911;28912;28913 29108;29109;29110;29111;29112 29111 5 EAAMEAEIK KKRKRDDNKDIDSEKEAAMEAEIKAARERA DIDSEKEAAMEAEIKAARERAIVPLEARMK K E A I K A 3 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 9 0 990.4692 O14776;G3V220 O14776 641 649 TCERG1 Transcription elongation regulator 1 yes no 2 0.0043669 60.91 By MS/MS 1 1.0519 0.89791 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0519 0.89791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2494200 1160900 1333300 0 0 0 0 0 0 0 0 0 2494200 1160900 1333300 0 0 0 0 0 0 5677 1494 5912 28914 29113 29113 1 EAAPDAGAEPITADSDPAYSSK FSLHHPSRIQVSSEKEAAPDAGAEPITADS AEPITADSDPAYSSKVLLLSSPGLEELYRC K E A S K V 6 0 0 3 0 0 2 1 0 1 0 1 0 0 3 3 1 0 1 0 0 0 22 0 2161.9651 Q8N163;E5RHJ4 Q8N163 288 309 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 1.6453E-17 99.566 By matching By MS/MS 1 2 0.51965 0.56798 5.434 3 Plateau 0.51965 0.50981 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5096 0.55566 3.1014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15547000 9151300 6395400 4132200 2417800 1714400 0 0 0 11415000 6733500 4681100 0 0 0 0 0 0 0 0 0 5678 3354 5913 28915;28916;28917 29114;29115 29114 2 EAAQAMYIDSYNSR DDELYQRTRISLLQREAAQAMYIDSYNSRG REAAQAMYIDSYNSRGFMINGNRVLGPCAL R E A S R G 3 1 1 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 2 0 0 0 14 0 1617.7093 Q9BU61 Q9BU61 53 66 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 yes yes 2 2.4736E-06 156.58 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.244 1.1062 21.957 5 Median 0.98666 0.9688 18.753 2 1 Median 1.298 1.0892 4.4088 2 0 Median NaN NaN NaN 0 0 Median 1.9646 1.5655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33892000 15537000 18355000 23644000 11031000 12613000 9874500 4349800 5524700 0 0 0 373600 156240 217360 0 0 0 0 0 0 5679 3834 5914;5915 28918;28919;28920;28921;28922;28923 29116;29117;29118;29119;29120;29121;29122;29123 29117 1835 8 EAATLEVERPLPMEVEK PKRPKEAENPEGEEKEAATLEVERPLPMEV ATLEVERPLPMEVEKNSTPSEPGSGRGPPQ K E A E K N 2 1 0 0 0 0 5 0 0 0 2 1 1 0 2 0 1 0 0 2 0 0 17 1 1939.9925 P51858 P51858 181 197 HDGF Hepatoma-derived growth factor yes yes 2;3 1.6176E-23 187.57 By matching By MS/MS By MS/MS 1 7 3 0.71869 0.72131 29.33 11 Median NaN NaN NaN 0 0 Median 0.79459 0.72131 NaN 1 0 Median 0.7017 0.75585 32.929 7 1 Median 0.89337 0.77462 18.11 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 216580000 121110000 95466000 0 0 0 1931300 1024100 907210 200570000 112380000 88185000 14079000 7705500 6373600 0 0 0 0 0 0 5680 2444 5916;5917 28924;28925;28926;28927;28928;28929;28930;28931;28932;28933;28934 29124;29125;29126;29127;29128;29129;29130;29131;29132;29133;29134 29130 1139 11 EAATQAQQTLGSTIDK ARETLKNSALSAQLREAATQAQQTLGSTID AATQAQQTLGSTIDKATGILLYGLASRLRD R E A D K A 3 0 0 1 0 3 1 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 16 0 1660.8268 P47897;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQU2;F2Z2V6 P47897 35 50 QARS Glutamine--tRNA ligase yes no 2 5.2748E-20 177.1 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.0202 0.92944 24.35 6 Median 1.0575 0.94261 NaN 1 0 Median 1.1232 0.98261 32.755 3 0 Plateau 0.98385 1.0744 NaN 1 1 Median 0.98418 0.85298 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57340000 27013000 30327000 22902000 10053000 12849000 20358000 9119900 11238000 10263000 5923400 4339500 3817300 1917600 1899700 0 0 0 0 0 0 5681 2356 5918 28935;28936;28937;28938;28939;28940 29135;29136;29137;29138;29139;29140;29141 29137 7 EAATSTLGGLGFSSER IVYSSLCGLGSEKGREAATSTLGGLGFSSE AATSTLGGLGFSSERNPEMQFKPNTPETVE R E A E R N 2 1 0 0 0 0 2 3 0 0 2 0 0 1 0 3 2 0 0 0 0 0 16 0 1581.7635 Q6W2J9;H7BYY2 Q6W2J9 103 118 BCOR BCL-6 corepressor yes no 2 1.0711E-20 141.38 By MS/MS 1 1.0602 1.1562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0602 1.1562 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11892000 5678100 6213600 0 0 0 0 0 0 11892000 5678100 6213600 0 0 0 0 0 0 0 0 0 5682 3191 5919 28941 29142 29142 1 EAAVEDLHHYR PVYSLYIWTFGVNMKEAAVEDLHHYRNLSE VNMKEAAVEDLHHYRNLSEFFRRKLKPQAR K E A Y R N 2 1 0 1 0 0 2 0 2 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1338.6317 B1AKM8;B1AKM6;H0Y7P7;Q9UG56 B1AKM8 119 129 PISD Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes no 3 0.010254 28.708 By MS/MS 1 1.2033 1.0261 NaN 1 Median NaN NaN NaN 0 0 Median 1.2033 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 738060 337750 400310 0 0 0 738060 337750 400310 0 0 0 0 0 0 0 0 0 0 0 0 5683 567 5920 28942 29143 29143 1 EAAVELLGR RGVHGRLMDNSTSVREAAVELLGRFVLCRP NSTSVREAAVELLGRFVLCRPQLAEQYYDM R E A G R F 2 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 956.5291 A0A590UJS4;Q6KC79 A0A590UJS4 1829 1837 NIPBL Nipped-B-like protein yes no 2 0.00067887 105.14 By MS/MS By MS/MS By matching 2 2 1 0.8237 0.84482 23.5 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68801 0.74185 7.453 2 0 Median NaN NaN NaN 0 0 Median 0.96415 1.0499 30.731 2 0 Median 1.0813 0.89983 NaN 1 0 Median 33796000 17563000 16232000 0 0 0 0 0 0 15488000 8486900 7000600 0 0 0 16088000 8025200 8062700 2220300 1051300 1169000 5684 488 5921 28943;28944;28945;28946;28947 29144;29145;29146;29147;29148 29144 5 EAAVSASDILQESAIHSPGTVEK SSSSEDSDEEWRRCREAAVSASDILQESAI ILQESAIHSPGTVEKEAKKKRKLKKKAKKV R E A E K E 4 0 0 1 0 1 3 1 1 2 1 1 0 0 1 4 1 0 0 2 0 0 23 0 2338.1652 F5H7W8;Q96C57;F5H3K2;E7ENF1;G5EA44;F5H8B7 F5H7W8 194 216 C12orf43 Uncharacterized protein C12orf43 yes no 3 8.5827E-06 55.128 By MS/MS 1 1.099 1.057 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.099 1.057 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8625400 4442500 4182900 0 0 0 0 0 0 8625400 4442500 4182900 0 0 0 0 0 0 0 0 0 5685 1045 5922 28948 29149 29149 1 EAAWAISNLTISGR MIIHQLAKGDFGTQKEAAWAISNLTISGRK KEAAWAISNLTISGRKDQVEYLVQQNVIPP K E A G R K 3 1 1 0 0 0 1 1 0 2 1 0 0 0 0 2 1 1 0 0 0 0 14 0 1487.7732 O00629;O00505 O00505 387 400 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 2 2.7813E-07 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.1495 1.0872 9.1704 6 Median 1.1109 1.0872 0.67967 2 0 Median 1.0978 0.92316 NaN 1 0 Median 1.1894 1.1762 NaN 1 0 Median 1.2195 1.0477 NaN 1 0 Median 1.183 1.1881 NaN 1 0 Median NaN NaN NaN 0 0 Median 62465000 28229000 34236000 9687800 4614600 5073200 13346000 6435800 6910100 33365000 14365000 19001000 2301400 997430 1304000 3765000 1816600 1948400 0 0 0 5686 1469;1475 5923 28949;28950;28951;28952;28953;28954 29150;29151;29152;29153;29154;29155;29156;29157;29158;29159;29160 29153 11 EAAWAITNATSGGSAEQIK ALISILQTAEFRTRKEAAWAITNATSGGSA AITNATSGGSAEQIKYLVELGCIKPLCDLL K E A I K Y 5 0 1 0 0 1 2 2 0 2 0 1 0 0 0 2 2 1 0 0 0 0 19 0 1903.9276 P52294 P52294 399 417 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 2 1.5212E-18 145.71 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 0.98079 0.88168 11.68 6 Median 0.81614 0.77105 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98495 0.95449 NaN 1 0 Median 1.0056 0.87021 9.1529 2 0 Median 1.1104 1.0572 NaN 1 0 Median 0.97666 0.83732 NaN 1 0 Median 34840000 17593000 17247000 9153400 5173500 3979900 0 0 0 19061000 9301000 9759500 1321200 600610 720600 5101200 2413100 2688100 203950 105010 98943 5687 2449 5924 28955;28956;28957;28958;28959;28960 29161;29162;29163;29164;29165 29164 5 EAAWAITNATSGGTPEQIR VLIEILQKAEFRTRKEAAWAITNATSGGTP AITNATSGGTPEQIRYLVSLGCIKPLCDLL K E A I R Y 4 1 1 0 0 1 2 2 0 2 0 0 0 0 1 1 3 1 0 0 0 0 19 0 1971.965 O60684;O15131 O60684 397 415 KPNA6;KPNA5 Importin subunit alpha-7;Importin subunit alpha-6 no no 2;3 7.276E-25 176.08 By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 0.89776 0.80609 19.653 7 Median 1.0417 1.0182 0.50337 2 0 Median 0.89776 0.80609 NaN 1 0 Median 0.76805 0.76437 4.6823 3 0 Plateau NaN NaN NaN 0 0 Median 1.1495 1.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median 42798000 21684000 21114000 11675000 5687400 5987300 204340 99310 105030 26687000 13903000 12784000 0 0 0 4232500 1994800 2237700 0 0 0 5688 1626;1524 5925 28961;28962;28963;28964;28965;28966;28967 29166;29167;29168;29169;29170;29171;29172;29173;29174 29170 9 EAAYHPEVAPDVR NLSRRAIADMLRACKEAAYHPEVAPDVRLR CKEAAYHPEVAPDVRLRALHYGRECANGYL K E A V R L 3 1 0 1 0 0 2 0 1 0 0 0 0 0 2 0 0 0 1 2 0 0 13 0 1452.6997 Q9Y490 Q9Y490 2221 2233 TLN1 Talin-1 yes yes 2;3 7.4978E-07 103.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 2 1 2 0.72817 0.64397 20.03 12 Median 0.66641 0.62839 7.9107 2 0 Median 0.77397 0.66118 7.989 5 1 Median 0.68339 0.75227 13.327 2 0 Median 0.69223 0.60893 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57627 0.47548 39.001 2 0 Median 114590000 59829000 54759000 18396000 10787000 7609200 76551000 38846000 37704000 14100000 7044300 7055300 3911300 2201400 1709900 0 0 0 1630300 950510 679800 5689 4441 5926 28968;28969;28970;28971;28972;28973;28974;28975;28976;28977;28978;28979 29175;29176;29177;29178;29179;29180;29181;29182;29183;29184;29185;29186;29187 29184 13 EADDIVNWLK RNGDTASPKEYTAGREADDIVNWLKKRTGP YTAGREADDIVNWLKKRTGPAATTLPDGAA R E A L K K 1 0 1 2 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 10 0 1201.5979 P07237;I3L312;I3L3P5 P07237 121 130 P4HB Protein disulfide-isomerase yes no 2 0.012703 40.987 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.4612 1.2565 5.8667 6 Median 1.2126 1.1289 NaN 1 0 Median 1.4927 1.2817 4.1382 2 0 Median 1.2174 1.2002 NaN 1 0 Median 1.4958 1.3094 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4872 1.2684 NaN 1 0 Median 44118000 19221000 24897000 30801000 13619000 17183000 4721400 1959400 2762000 7799200 3345000 4454200 429880 173760 256120 0 0 0 366830 124250 242580 5690 1883 5927 28980;28981;28982;28983;28984;28985 29188;29189;29190 29190 3 EADEDAVQFANR WAIVCSVWYLPPMTREADEDAVQFANRVKS MTREADEDAVQFANRVKSAIARQGGLVDLL R E A N R V 3 1 1 2 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1363.6004 Q86UL3 Q86UL3 394 405 AGPAT6 Glycerol-3-phosphate acyltransferase 4 yes yes 2 8.4481E-05 155.42 By MS/MS 1 1.5539 1.2719 NaN 1 Median NaN NaN NaN 0 0 Median 1.5539 1.2719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8776000 4492700 4283200 0 0 0 8776000 4492700 4283200 0 0 0 0 0 0 0 0 0 0 0 0 5691 3279 5928 28986 29191 29191 1 EADESLNFEEQILEAAK AAKKLEQLKPRAKPKEADESLNFEEQILEA DESLNFEEQILEAAKSIAAATSALVKAASA K E A A K S 3 0 1 1 0 1 5 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 17 0 1934.9109 Q9Y490 Q9Y490 2334 2350 TLN1 Talin-1 yes yes 2 0.00055225 41.052 By MS/MS By matching By matching By matching 1 1 1 1 1.3145 1.1527 29.914 4 Median 0.95781 0.92211 NaN 1 0 Median 1.1639 1.0224 NaN 1 0 Median 1.63 1.8083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4846 1.2996 NaN 1 0 Median 9200000 4078000 5122000 6474700 2970600 3504100 1314500 517980 796540 1317700 555120 762540 0 0 0 0 0 0 93173 34363 58811 5692 4441 5929 28987;28988;28989;28990 29192 29192 1 EADGILKPLPK NVLEIWNLVFIQYNREADGILKPLPKKSID QYNREADGILKPLPKKSIDTGMGLERLVSV R E A P K K 1 0 0 1 0 0 1 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 11 1 1179.6863 P49588 P49588 225 235 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0007607 90.601 By MS/MS By MS/MS 1 2 0.89215 0.88712 7.142 3 Plateau 0.82283 0.86349 NaN 1 0 Median 0.88442 0.8368 9.7695 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19985000 10165000 9820500 8158900 4474600 3684300 11826000 5690000 6136200 0 0 0 0 0 0 0 0 0 0 0 0 5693 2385 5930 28991;28992;28993 29193;29194;29195 29195 3 EADGSETPEPFAAEAK VTVMLSGIKCPTFRREADGSETPEPFAAEA ADGSETPEPFAAEAKFFTESRLLQRDVQII R E A A K F 4 0 0 1 0 0 4 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 16 0 1647.7264 Q7KZF4 Q7KZF4 234 249 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 5.4969E-05 78.903 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.87501 0.77332 10.979 5 Median 0.69725 0.67185 NaN 1 0 Median 0.93616 0.8196 13.561 2 0 Median 0.70839 0.77332 NaN 1 0 Median 0.94714 0.82067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44742000 25947000 18795000 21767000 13158000 8608500 6605200 3574500 3030800 10573000 5984500 4588300 5797600 3229700 2567800 0 0 0 0 0 0 5694 3214 5931 28994;28995;28996;28997;28998 29196;29197;29198;29199;29200;29201;29202 29198 7 EADLDVATITK VTEFEQRHHCLELAKEADLDVATITKTVVE ELAKEADLDVATITKTVVENIRKKDNGEFS K E A T K T 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1174.6081 P57740 P57740 627 637 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.00019029 76.282 By matching By MS/MS By matching 1 1 1 1.1097 1.197 19.841 3 Plateau 0.83281 0.81954 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1097 1.197 NaN 1 0 Median 1.0319 0.89403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40881000 18939000 21942000 3761100 2022900 1738200 0 0 0 31339000 14297000 17042000 5781100 2619600 3161500 0 0 0 0 0 0 5695 2518 5932 28999;29000;29001 29203;29204 29204 2 EADLPMTAASHSSAFTPVTAAASPVSLPR LISKGLGETATVLTKEADLPMTAASHSSAF FTPVTAAASPVSLPRTPRIANGIATRLGSH K E A P R T 7 1 0 1 0 0 1 0 1 0 2 0 1 1 4 5 3 0 0 2 0 0 29 0 2881.428 Q9Y4B6 Q9Y4B6 873 901 VPRBP Protein VPRBP yes yes 3 5.814E-14 51.586 By MS/MS 1 0.55887 0.5355 NaN 1 Median 0.55887 0.5355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4723700 3064100 1659600 4723700 3064100 1659600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5696 4442 5933 29002 29205 29205 1 EADPDDHYQPGEGTQATADK EASAATRKAFTTFRREADPDDHYQPGEGTQ DHYQPGEGTQATADKAKDDLEMSAVITIMQ R E A D K A 3 0 0 4 0 2 2 2 1 0 0 1 0 0 2 0 2 0 1 0 0 0 20 0 2143.893 A0A3B3IRP0;A0A3B3IU13;A0A3B3IU05;A0A3B3ITQ1;A0A3B3ITU8;A0A3B3IU04;A0A3F2YNW8;Q14643 A0A3B3IRP0 720 739 ITPR1 Inositol 1,4,5-trisphosphate receptor type 1 yes no 3 0.00043112 30.094 By MS/MS 1 0.59549 0.52299 NaN 1 Median NaN NaN NaN 0 0 Median 0.59549 0.52299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1393700 842100 551630 0 0 0 1393700 842100 551630 0 0 0 0 0 0 0 0 0 0 0 0 5697 414 5934 29003 29206 29206 1 EADPESEADR GDPGNRHEPREQGPREADPESEADRAAVED EQGPREADPESEADRAAVEDINPADDPNNQ R E A D R A 2 1 0 2 0 0 3 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 10 0 1117.4524 O00461;F8W785 O00461 533 542 GOLIM4 Golgi integral membrane protein 4 yes no 2 0.0094773 45.161 By matching By MS/MS 1 1 1.0068 0.93602 5.7812 2 Median 0.89435 0.89853 NaN 1 0 Median 1.1334 0.97508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2038300 1062900 975400 321210 157590 163620 1717100 905340 811780 0 0 0 0 0 0 0 0 0 0 0 0 5698 1466 5935 29004;29005 29207 29207 1 EADYVAQATR EGITVYSMQFGGYAKEADYVAQATRLRAAL GGYAKEADYVAQATRLRAALEGTATYRGDI K E A T R L 3 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 10 0 1122.5306 Q9NRV9;A0A3B3IRV5 Q9NRV9 141 150 HEBP1 Heme-binding protein 1 yes no 2 0.00063896 72.643 By MS/MS By MS/MS By matching 1 1 1 1.0807 1.0102 5.9323 3 Median 0.97571 0.92067 NaN 1 0 Median 1.2087 1.0281 NaN 1 0 Median 1.0807 1.0102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6849600 3408700 3441000 4396600 2323700 2072900 1266500 557130 709320 1186600 527820 658730 0 0 0 0 0 0 0 0 0 5699 4088 5936 29006;29007;29008 29208;29209 29208 2 EAEAAEAEEPWGEEAR GEQSQVRQKVRIVSREAEAAEAEEPWGEEA AEAAEAEEPWGEEAREGRRRGPRRESKPEE R E A A R E 5 1 0 0 0 0 7 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 16 0 1772.7489 E7EN32;O00255 E7EN32 406 421 MEN1 Menin yes no 2 7.2976E-10 144.1 By MS/MS 1 0.69158 0.72496 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69158 0.72496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5121200 2922300 2198900 0 0 0 0 0 0 5121200 2922300 2198900 0 0 0 0 0 0 0 0 0 5700 860 5937 29009 29210;29211 29211 2 EAEAAIYHLQLFEELR DYPLEAVRMQHLIAREAEAAIYHLQLFEEL AEAAIYHLQLFEELRRLAPITSDPTEATAV R E A L R R 3 1 0 0 0 1 4 0 1 1 3 0 0 1 0 0 0 0 1 0 0 0 16 0 1930.9789 P14618;B4DNK4 P14618 384 399 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 2;3 3.815E-08 130.56 By MS/MS By MS/MS By MS/MS By matching 3 13 1 1 1.0888 0.94737 39.025 18 Median 1.0942 1.0774 35.913 3 1 Median 1.0754 0.92418 28.704 13 1 Median 1.3208 1.3847 NaN 1 0 Median 3.5949 3.0836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153180000 78284000 74894000 57212000 33797000 23415000 90106000 42269000 47836000 2878800 1383500 1495300 2981900 834410 2147500 0 0 0 0 0 0 5701 2005 5938 29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027 29212;29213;29214;29215;29216;29217;29218;29219;29220 29218 9 EAEAAIYHLQLFEELRR DYPLEAVRMQHLIAREAEAAIYHLQLFEEL EAAIYHLQLFEELRRLAPITSDPTEATAVG R E A R R L 3 2 0 0 0 1 4 0 1 1 3 0 0 1 0 0 0 0 1 0 0 0 17 1 2087.08 P14618;B4DNK4 P14618 384 400 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 2;3;4 4.4346E-78 244.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 15 2 2 2 1.1277 1.074 28.619 29 Median 1.2144 1.2757 32.669 8 1 Median 1.0778 0.97295 11.057 15 0 Median 1.1392 1.2304 7.8818 2 0 Median 1.2067 1.1103 8.6955 2 0 Median NaN NaN NaN 0 0 Median 0.72214 0.63845 23.554 2 0 Median 1052300000 481150000 571180000 402630000 173640000 228990000 601190000 286560000 314630000 42518000 18113000 24405000 4191800 1848100 2343700 0 0 0 1787100 984900 802170 5702 2005 5939 29028;29029;29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053;29054;29055;29056 29221;29222;29223;29224;29225;29226;29227;29228;29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241;29242;29243;29244;29245;29246;29247;29248;29249;29250;29251;29252;29253;29254;29255 29249 34 EAEAAMFHR DYPLEAVRMQHLIAREAEAAMFHRKLFEEL QHLIAREAEAAMFHRKLFEELVRASSHSTD R E A H R K 3 1 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 9 0 1060.476 H3BTN5 H3BTN5 384 392 PKM Pyruvate kinase no no 2 0.007699 67.981 By MS/MS 1 2.4157 2.0945 NaN 1 Median NaN NaN NaN 0 0 Median 2.4157 2.0945 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4077000 1101900 2975100 0 0 0 4077000 1101900 2975100 0 0 0 0 0 0 0 0 0 0 0 0 5703 1237 5940 29057 29256 29256 1 EAEAMALLAEAER ______________________________ GKEAEAMALLAEAERKVKNSQSFFSGLFGG K E A E R K 5 1 0 0 0 0 4 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 13 0 1402.6762 M0R0Y2;P54920;M0R2M1;M0QZM9;M0QZN5;M0R031 M0R0Y2 7 19 NAPA Alpha-soluble NSF attachment protein yes no 2 0.00094542 76.143 By MS/MS By MS/MS 1 1 0.81152 0.78432 0.84408 2 Median 0.81607 0.78902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80698 0.77966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3962800 2054600 1908200 2228000 1156300 1071700 0 0 0 1734800 898310 836530 0 0 0 0 0 0 0 0 0 5704 1430 5941 29058;29059 29257;29258 29258 2 EAEDELSAR ENKHKPRRKSKRGKKEAEDELSARHPAELA SKRGKKEAEDELSARHPAELAMEPTPELPA K E A A R H 2 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1018.4567 K7EKE6;P36776;K7EJE8 K7EKE6 131 139 LONP1 Lon protease homolog, mitochondrial yes no 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS 1 1 1 1.0496 1.1179 18.689 3 Median 0.84767 0.83754 NaN 1 0 Median 1.4168 1.1885 NaN 1 0 Median 1.0496 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10815000 4563300 6251900 2069700 1161800 907850 7787100 3038500 4748700 958330 363010 595320 0 0 0 0 0 0 0 0 0 5705 1370 5942 29060;29061;29062 29259;29260;29261 29261 3 EAEDGFR EAFHKQMMGGFKETKEAEDGFRKAQKPWAK MGGFKETKEAEDGFRKAQKPWAKKLKEVEA K E A F R K 1 1 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7 0 822.3508 A0A0U1RR22;Q9UNF0;B0QYG7;B0QYG8;Q9BY11 A0A0U1RR22 133 139 PACSIN2;PACSIN1 Protein kinase C and casein kinase substrate in neurons protein 2;Protein kinase C and casein kinase substrate in neurons protein 1 no no 2 0.044246 43 By MS/MS By matching By matching By matching 1 1 1 1 1.1744 1.0864 7.894 4 Median 1.1446 1.1139 NaN 1 0 Median 1.2051 1.062 NaN 1 0 Median 0.93874 0.94132 NaN 1 0 Median 1.2958 1.1113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1431400 676840 754590 384230 199550 184680 576990 251910 325080 216560 112440 104120 253650 112940 140710 0 0 0 0 0 0 5706 307 5943 29063;29064;29065;29066 29262 29262 1 EAEEVYR QKVMDEVEKARAKKREAEEVYRNSMPASSF EKARAKKREAEEVYRNSMPASSFQQQKLRV R E A Y R N 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 7 0 894.40831 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 234 240 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 0.007586 88.734 By matching By matching By MS/MS 1 2 2 1.032 1.024 22.385 5 Median 1.032 1.024 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2025 1.2184 39.997 2 0 Median NaN NaN NaN 0 0 Median 0.9867 1.0238 6.4233 2 1 Median NaN NaN NaN 0 0 Median 6534000 3073300 3460700 1462700 736290 726400 0 0 0 1111500 531110 580360 0 0 0 3959800 1805900 2153900 0 0 0 5707 206;4407 5944 29067;29068;29069;29070;29071 29263;29264 29263 2 EAEGAPQVEAGK NTFSRPGGRASVDTKEAEGAPQVEAGKRLE DTKEAEGAPQVEAGKRLEELRRRRGETESE K E A G K R 3 0 0 0 0 1 3 2 0 0 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1184.5673 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 262 273 CALD1 Caldesmon yes no 2 0.0013475 54.066 By MS/MS 1 0.68036 0.72403 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68036 0.72403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3157700 1802900 1354800 0 0 0 0 0 0 3157700 1802900 1354800 0 0 0 0 0 0 0 0 0 5708 928 5945 29072 29265 29265 1 EAEILEVLR TARWEYMHSPSENSKEAEILEVLRHPRDWV PSENSKEAEILEVLRHPRDWVR________ K E A L R H 1 1 0 0 0 0 3 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1070.5972 P36551 P36551 439 447 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 2 0.0011692 84.498 By MS/MS By matching By matching By matching 1 2 2 1 1.0436 1.0456 12.369 6 Median 1.0482 1.0429 NaN 1 0 Median 1.1574 1.0045 15.975 2 0 Median 0.95567 0.96827 11.241 2 0 Median 1.3875 1.2223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19335000 8445200 10890000 3816700 1804500 2012200 11906000 4822700 7083100 2866000 1500600 1365400 746460 317350 429110 0 0 0 0 0 0 5709 2259 5946 29073;29074;29075;29076;29077;29078 29266 29266 1 EAEKLESEHPDQAQAILSR RDLVAIEAKLSDLQKEAEKLESEHPDQAQA LESEHPDQAQAILSRLAEISDVWEEMKTTL K E A S R L 3 1 0 1 0 2 4 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 19 1 2150.0604 Q01082;A0A087WUZ3 Q01082 1018 1036 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 3.8962E-31 188.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 5 4 3 1 0.84763 0.87563 22.159 20 Median 1.0126 1.0081 14.354 3 0 Plateau 1.1248 1.028 2.5009 4 0 Median 0.73168 0.83044 18.627 5 0 Median 0.74046 0.86854 20.257 4 0 Linear 0.83407 0.92084 17.549 3 0 Median 0.58293 0.50986 NaN 1 0 Median 631270000 333740000 297530000 77185000 37161000 40023000 164930000 77316000 87609000 323810000 184360000 139450000 45881000 23610000 22271000 18409000 10679000 7729400 1062800 616370 446440 5710 2681 5947 29079;29080;29081;29082;29083;29084;29085;29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098 29267;29268;29269;29270;29271;29272;29273;29274;29275;29276;29277;29278;29279;29280;29281;29282;29283;29284;29285;29286;29287;29288 29271 22 EAEKPAVPETAGIK RTERKAPKKKLPQKKEAEKPAVPETAGIKF KEAEKPAVPETAGIKFPDFKSAGVTLRSQR K E A I K F 3 0 0 0 0 0 3 1 0 1 0 2 0 0 2 0 1 0 0 1 0 0 14 1 1438.7668 Q9NPF5 Q9NPF5 298 311 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 3 0.0053937 29.491 By MS/MS By MS/MS 1 1 0.6715 0.68871 11.165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7082 0.74529 NaN 1 0 Median 0.6367 0.63643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2376400 1214100 1162300 0 0 0 0 0 0 1399900 811850 588020 976500 402240 574260 0 0 0 0 0 0 5711 4050 5948 29099;29100 29289;29290;29291 29289 3 EAEKSEDSSGAAGLSGLHR KEIEEDKLKREEEKREAEKSEDSSGAAGLS SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV R E A H R T 3 1 0 1 0 0 3 3 1 0 2 1 0 0 0 4 0 0 0 0 0 0 19 1 1899.8922 Q86U86 Q86U86 927 945 PBRM1 Protein polybromo-1 yes yes 3;4 9.3832E-07 54.288 By MS/MS By MS/MS 2 2 1.0375 1.116 15.786 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83847 1.0049 4.1365 2 0 Median 1.3381 1.2918 9.9951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33356000 17005000 16351000 0 0 0 0 0 0 29093000 15003000 14089000 4263400 2001100 2262400 0 0 0 0 0 0 5712 3273 5949 29101;29102;29103;29104 29292;29293;29294;29295;29296;29297;29298;29299;29300 29293 9 EAELDVNEELDKK LRSNGYEEAYSVFKKEAELDVNEELDKKYA KKEAELDVNEELDKKYAGLLEKKWTSVIRL K E A K K Y 1 0 1 2 0 0 4 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1530.7413 P43034;I3L495 P43034 34 46 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 3 0.00027735 64.104 By MS/MS By MS/MS 1 1 0.78843 0.8036 34.634 2 Median 0.94197 1.0266 NaN 1 0 Median 0.65991 0.62905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13906000 8387100 5518800 7642800 3984100 3658800 6263000 4403100 1860000 0 0 0 0 0 0 0 0 0 0 0 0 5713 2321 5950 29105;29106 29301;29302 29301 1 EAELLEPLMPAIR EFIRGSTLRFLCKLKEAELLEPLMPAIRAC LKEAELLEPLMPAIRACLEHRHSYVRRNAV K E A I R A 2 1 0 0 0 0 3 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 13 0 1480.796 P53618;E9PP73 P53618 129 141 COPB1 Coatomer subunit beta yes no 2 3.318E-11 136.57 By MS/MS By MS/MS 1 3 0.65003 0.562 37.123 4 Median 0.89135 0.8976 NaN 1 0 Median 0.6358 0.54962 25.488 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14901000 9156000 5744800 1130600 665150 465500 13770000 8490800 5279300 0 0 0 0 0 0 0 0 0 0 0 0 5714 2472 5951 29107;29108;29109;29110 29303;29304;29305 29304 3 EAELPLLDLMK EGVVDHQTELSNLAKEAELPLLDLMKLYEG NLAKEAELPLLDLMKLYEGAFLPSSQWPRP K E A M K L 1 0 0 1 0 0 2 0 0 0 4 1 1 0 1 0 0 0 0 0 0 0 11 0 1270.6843 Q96L91 Q96L91 978 988 EP400 E1A-binding protein p400 yes yes 2 0.0018537 56.729 By MS/MS 2 0.84167 0.92155 15.491 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84167 0.92155 15.491 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1723800 953380 770440 0 0 0 0 0 0 1723800 953380 770440 0 0 0 0 0 0 0 0 0 5715 3700 5952 29111;29112 29306;29307 29306 2 EAELQAVLHPEFHIQFLGGK QVDLVWALCVLQQAREAELQAVLHPEFHIQ AVLHPEFHIQFLGGKSQKDQNTFQKLLHIN R E A G K S 2 0 0 0 0 2 3 2 2 1 3 1 0 2 1 0 0 0 0 1 0 0 20 0 2262.1797 Q969Z0 Q969Z0 424 443 TBRG4 Protein TBRG4 yes yes 3 1.2461E-08 62.475 By MS/MS 1 1.4385 1.2308 NaN 1 Median NaN NaN NaN 0 0 Median 1.4385 1.2308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811400 1618200 2193200 0 0 0 3811400 1618200 2193200 0 0 0 0 0 0 0 0 0 0 0 0 5716 3591 5953 29113 29308 29308 1 EAELTEINRR HNSISEAKMRDKHKKEAELTEINRRHITES DKHKKEAELTEINRRHITESVNSIRRLEEA K E A R R H 1 2 1 0 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 1 1229.6364 Q01970 Q01970 1118 1127 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2;3 0.0027071 46.426 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.5747 1.7182 72.123 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3638 1.6586 NaN 1 0 Median 1.4036 1.3741 36.6 2 0 Median NaN NaN NaN 0 0 Median 6.7466 5.7444 NaN 1 0 Median 8453700 3218100 5235700 0 0 0 813060 261910 551150 2105100 857790 1247300 3546700 1716900 1829800 0 0 0 1988800 381450 1607400 5717 2695 5954 29114;29115;29116;29117;29118 29309;29310;29311 29311 3 EAEMEEHREHIK RRGDQGPKTIDQIHKEAEMEEHREHIKVQQ IHKEAEMEEHREHIKVQQLMAKGSDKRRGG K E A I K V 1 1 0 0 0 0 5 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 12 1 1536.6991 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 845 856 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.00018797 73.435 By MS/MS By matching By matching 3 3 1 1.1033 1.0764 18.154 7 Median NaN NaN NaN 0 0 Median 1.1033 1.0632 10.268 3 0 Median 1.1868 1.4098 16.161 3 0 Plateau NaN NaN NaN 0 0 Median 1.3764 1.5366 NaN 1 0 Median NaN NaN NaN 0 0 Median 10997000 4983600 6013800 0 0 0 9313100 4159400 5153700 1453800 718950 734850 0 0 0 230530 105250 125280 0 0 0 5718 894 5955 29119;29120;29121;29122;29123;29124;29125 29312;29313 29313 2 EAENPEGEEKEAATLEVERPLPMEVEK RRAGDLLEDSPKRPKEAENPEGEEKEAATL ATLEVERPLPMEVEKNSTPSEPGSGRGPPQ K E A E K N 3 1 1 0 0 0 10 1 0 0 2 2 1 0 3 0 1 0 0 2 0 0 27 2 3052.4547 P51858 P51858 171 197 HDGF Hepatoma-derived growth factor yes yes 3;4 0.0029492 24.837 By MS/MS By matching 3 2 0.6186 0.65168 4.4084 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60127 0.67411 4.5695 3 0 Median 0.63891 0.63911 2.755 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61811000 36757000 25054000 0 0 0 0 0 0 59734000 35642000 24093000 2076800 1114800 961950 0 0 0 0 0 0 5719 2444 5956 29126;29127;29128;29129;29130 29314;29315;29316 29315 3 EAEQILATAVYQAK EKRDSDIQQLQKQLKEAEQILATAVYQAKE KEAEQILATAVYQAKEKLKSIEKARKGAIS K E A A K E 4 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 14 0 1533.8039 Q9NPJ6;Q5T911 Q9NPJ6 116 129 MED4 Mediator of RNA polymerase II transcription subunit 4 yes no 2 6.0764E-08 102.52 By MS/MS By matching By matching By matching 1 1 3 1 0.88462 0.8607 16.799 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86589 0.83121 NaN 1 0 Median 1.1046 0.94401 NaN 1 0 Median 0.90656 1.0392 23.609 3 0 Plateau 0.90376 0.74122 NaN 1 0 Median 35070000 18038000 17032000 0 0 0 0 0 0 6221200 3148000 3073200 412330 194440 217880 26034000 13472000 12563000 2402200 1223800 1178300 5720 4056 5957 29131;29132;29133;29134;29135;29136 29317;29318 29317 2 EAEQMGNELER RQFCSTQAALQAMEREAEQMGNELERLRAA AMEREAEQMGNELERLRAALMESQGQQQEE R E A E R L 1 1 1 0 0 1 4 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1304.5667 A0A087WY61;Q14980 Q14980 973 983 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 3.299E-15 190.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 0.89367 0.89607 9.3951 9 Median NaN NaN NaN 0 0 Median 1.0786 0.92124 NaN 1 0 Median 0.85195 0.93708 2.1574 2 0 Median 1.0461 0.91763 3.3618 2 0 Median 0.83339 0.86007 0.80296 2 0 Median 0.90041 0.74424 0.28753 2 0 Median 83605000 42604000 41001000 0 0 0 6345100 2882600 3462500 26745000 13772000 12973000 3479600 1724300 1755300 43456000 22512000 20943000 3579800 1712600 1867200 5721 2905;77 5958;5959 29137;29138;29139;29140;29141;29142;29143;29144;29145 29319;29320;29321;29322;29323;29324;29325;29326;29327;29328;29329;29330;29331 29322 31 13 EAESLIAK DGTTSVTVLAAELLREAESLIAKKIHPQTI LAAELLREAESLIAKKIHPQTIIAGWREAT R E A A K K 2 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 859.4651 P78371;F5GWF6;F8VQ14 P78371 112 119 CCT2 T-complex protein 1 subunit beta yes no 2 0.0052175 77.058 By MS/MS By MS/MS By matching By matching By matching By MS/MS 4 1 1 1 1 2 1.1146 0.99063 19.717 10 Median 1.3968 1.3566 25.909 4 0 Linear 1.0508 0.89002 NaN 1 0 Median 0.99488 1.0027 NaN 1 0 Median 1.1821 0.97871 NaN 1 0 Median 1.2006 1.2854 NaN 1 0 Median 1.1993 0.99296 23.823 2 1 Median 35214000 16265000 18949000 15466000 6853600 8612000 14842000 7185600 7656600 1191400 568810 622640 402750 194830 207920 1236900 466670 770250 2075000 995310 1079700 5722 2644 5960 29146;29147;29148;29149;29150;29151;29152;29153;29154;29155 29332;29333;29334;29335 29333 4 EAESSPFVER EKQDKIYFMAGSSRKEAESSPFVERLLKKG GSSRKEAESSPFVERLLKKGYEVIYLTEPV K E A E R L 1 1 0 0 0 0 3 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 10 0 1149.5302 P14625 P14625 548 557 HSP90B1 Endoplasmin yes yes 2 5.1551E-05 135.79 By MS/MS By MS/MS 1 1 1.014 0.92481 24.145 2 Median 0.81064 0.77965 NaN 1 0 Median 1.2683 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55591000 27070000 28520000 29164000 15423000 13741000 26427000 11647000 14779000 0 0 0 0 0 0 0 0 0 0 0 0 5723 2006 5961 29156;29157 29336;29337;29338;29339;29340 29339 5 EAETFKEQGNAYYAK AATEPELLDDQEAKREAETFKEQGNAYYAK EAETFKEQGNAYYAKKDYNEAYNYYTKAID R E A A K K 3 0 1 0 0 1 3 1 0 0 0 2 0 1 0 0 1 0 2 0 0 0 15 1 1747.8053 Q99615;K7ESP1;K7EIH8;K7EK03;K7ELJ8 Q99615 27 41 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2;3 0.00022444 79.741 By MS/MS By MS/MS By MS/MS 2 1 1 1.3391 1.2533 10.896 4 Median 1.2401 1.1631 5.5984 2 0 Median 1.3875 1.2981 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5651 1.4451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32064000 13496000 18568000 25909000 11237000 14672000 5034900 1815500 3219300 0 0 0 1119900 443180 676730 0 0 0 0 0 0 5724 3759 5962 29158;29159;29160;29161 29341;29342;29343;29344;29345;29346 29342 6 EAEYEESVAKEDQPAVPGETQGDSYFTGK TREPLILEEEREMEREAEYEESVAKEDQPA AVPGETQGDSYFTGKKTIETVKAAERIMEA R E A G K K 3 0 0 2 0 2 6 3 0 0 0 2 0 1 2 2 2 0 2 2 0 0 29 1 3160.3997 Q9UNX4 Q9UNX4 720 748 WDR3 WD repeat-containing protein 3 yes yes 3 4.0279E-09 44.743 By MS/MS By matching 1 1 0.87232 0.90996 15.834 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7122 0.81358 NaN 1 0 Median 1.0684 1.0178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8829600 4428800 4400700 0 0 0 0 0 0 7430500 3673300 3757200 1399100 755530 643540 0 0 0 0 0 0 5725 4351 5963 29162;29163 29347;29348 29348 2 EAEYFELPELVR LVLPDYFPERSRLQREAEYFELPELVRRLG LQREAEYFELPELVRRLGAPQQPGPGPPPS R E A V R R 1 1 0 0 0 0 4 0 0 0 2 0 0 1 1 0 0 0 1 1 0 0 12 0 1493.7402 Q96CX2 Q96CX2 116 127 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 2 0.028681 28.958 By MS/MS 1 0.88902 0.85296 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88902 0.85296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1415400 804570 610820 0 0 0 0 0 0 1415400 804570 610820 0 0 0 0 0 0 0 0 0 5726 3623 5964 29164 29349 29349 1 EAFEAIK MTREQERGHAAVRRREAFEAIKAAATSKFP GHAAVRRREAFEAIKAAATSKFPPHRFIAD R E A I K A 2 0 0 0 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 806.41742 Q9BQC6 Q9BQC6 69 75 MRPL57 Ribosomal protein 63, mitochondrial yes yes 2 0.020607 76.847 By MS/MS By MS/MS 1 1 3.4341 3.0065 5.1496 2 Median 3.3622 3.118 NaN 1 1 Median 3.5076 2.899 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7164600 1832700 5331900 2092400 536880 1555600 5072200 1295800 3776400 0 0 0 0 0 0 0 0 0 0 0 0 5727 3788 5965 29165;29166 29350;29351 29351 2 EAFEAYTDHATYK GIIVSTRLLDRTDSREAFEAYTDHATYKAG SREAFEAYTDHATYKAGYLSTNTQQFVAAF R E A Y K A 3 0 0 1 0 0 2 0 1 0 0 1 0 1 0 0 2 0 2 0 0 0 13 0 1544.6783 O15031;E2PU09 O15031 195 207 PLXNB2 Plexin-B2 yes no 3 0.00060983 48.532 By MS/MS By matching 1 1 1.0095 0.92224 36.456 2 Median 0.74046 0.71267 NaN 1 0 Median 1.3762 1.1934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7755600 3884600 3871000 6370600 3324700 3045900 1385000 559870 825110 0 0 0 0 0 0 0 0 0 0 0 0 5728 1514 5966 29167;29168 29352 29352 1 EAFEETHLTSLDPVK AMDLGPMRKSYRGDREAFEETHLTSLDPVK EAFEETHLTSLDPVKQFAAWFEEAVQCPDI R E A V K Q 1 0 0 1 0 0 3 0 1 0 2 1 0 1 1 1 2 0 0 1 0 0 15 0 1714.8414 J3QQZ9;Q9NVS9;A0A286YFL3 J3QQZ9 36 50 PNPO Pyridoxine-5-phosphate oxidase yes no 2;3 0.00052444 48.741 By MS/MS By MS/MS By matching 2 2 1 0.91603 0.79754 23.804 5 Median 0.70557 0.65726 13.724 2 0 Median 1.1156 0.95603 25.635 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97039 0.83008 NaN 1 0 Median 27011000 14166000 12845000 16711000 9716900 6994000 9241800 3977700 5264100 0 0 0 0 0 0 0 0 0 1058300 471390 586890 5729 1346 5967 29169;29170;29171;29172;29173 29353;29354;29355;29356 29355 4 EAFEISK EKKNSVVEASEAAYKEAFEISKEQMQPTHP EASEAAYKEAFEISKEQMQPTHPIRLGLAL K E A S K E 1 0 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 7 0 822.41233 Q04917;A2IDB2 Q04917 156 162 YWHAH 14-3-3 protein eta yes no 2 0.024437 63.301 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1188 1.0225 9.0512 4 Median 1.1247 1.0447 NaN 1 1 Median 1.1128 0.94792 NaN 1 0 Median 1.0541 1.0006 NaN 1 0 Median 1.422 1.173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11641000 5338300 6302700 5586600 2593900 2992700 1447100 518610 928530 3886600 1934600 1952000 720700 291220 429480 0 0 0 0 0 0 5730 2714 5968 29174;29175;29176;29177 29357;29358 29358 2 EAFGFIER KKKQARCQGVVCAMKEAFGFIERGDVVKEI GVVCAMKEAFGFIERGDVVKEIFFHYSEFK K E A E R G 1 1 0 0 0 0 2 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 8 0 967.47633 O75534;E9PLT0;E9PNG3 O75534 195 202 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.013566 52.786 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.2649 1.2565 11.836 5 Median 1.2708 1.2357 3.1881 2 0 Median 1.1578 1.0033 NaN 1 0 Median 1.1728 1.2565 NaN 1 0 Median 1.5978 1.3825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18040000 8016200 10024000 10596000 4264200 6332100 3383400 1571200 1812100 3881100 2112400 1768700 179390 68359 111030 0 0 0 0 0 0 5731 1684 5969 29178;29179;29180;29181;29182 29359;29360;29361 29360 3 EAFGNALLQR ETVYSLLDTLSPAYREAFGNALLQRLEALK SPAYREAFGNALLQRLEALKRDGQS_____ R E A Q R L 2 1 1 0 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 10 0 1117.588 Q9P0R6 Q9P0R6 120 129 GSKIP GSK3-beta interaction protein yes yes 2 0.00073675 98.299 By MS/MS By matching 1 1 1.5094 1.368 2.6165 2 Median 1.3639 1.3429 NaN 1 0 Median 1.6704 1.3935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6823600 2897000 3926600 6042000 2587300 3454700 781590 309720 471870 0 0 0 0 0 0 0 0 0 0 0 0 5732 4208 5970 29183;29184 29362;29363 29362 2 EAFLEQFR LFERTCRQYDKLRKREAFLEQFRKEDMFKD YDKLRKREAFLEQFRKEDMFKDNFDEMDTS R E A F R K 1 1 0 0 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1038.5134 P23258 P23258 402 409 TUBG1 Tubulin gamma-1 chain yes yes 2 0.0034702 94.262 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.0706 0.92711 10.832 5 Median NaN NaN NaN 0 0 Median 0.9566 0.84782 NaN 1 0 Median 1.0706 1.0617 NaN 1 0 Median 1.1164 0.97208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.014 0.86583 9.6715 2 0 Median 10480000 4746700 5733300 0 0 0 414980 210790 204190 7917300 3504900 4412400 1727500 788190 939270 0 0 0 420300 242800 177490 5733 2108 5971 29185;29186;29187;29188;29189 29364;29365;29366;29367 29365 4 EAFLEQFRK LFERTCRQYDKLRKREAFLEQFRKEDMFKD DKLRKREAFLEQFRKEDMFKDNFDEMDTSR R E A R K E 1 1 0 0 0 1 2 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 9 1 1166.6084 P23258 P23258 402 410 TUBG1 Tubulin gamma-1 chain yes yes 2 3.5687E-05 124.08 By MS/MS 2 1.2087 1.1571 0.87472 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2087 1.1571 0.87472 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15773000 6993700 8779100 0 0 0 0 0 0 0 0 0 15773000 6993700 8779100 0 0 0 0 0 0 5734 2108 5972 29190;29191 29368;29369 29369 2 EAFLNTEDKGDSLDSVEALIK FHRDCEQAENWMAAREAFLNTEDKGDSLDS EDKGDSLDSVEALIKKHEDFDKAINVQEEK R E A I K K 2 0 1 3 0 0 3 1 0 1 3 2 0 1 0 2 1 0 0 1 0 0 21 1 2293.1325 A0A0D9SF54;Q13813 Q13813 1465 1485 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.4752E-14 90.972 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 3 1 1 1.1489 1.11 33.917 11 Median 1.3595 1.3982 15.408 2 0 Median 1.1692 1.1178 31.78 4 0 Median 0.92126 1.071 29.502 3 0 Plateau 1.0495 0.9769 NaN 1 0 Median 0.6455 0.69829 NaN 1 0 Median NaN NaN NaN 0 0 Median 152630000 69283000 83351000 16761000 6601500 10160000 83138000 36765000 46373000 51156000 25201000 25955000 450400 203310 247080 1128400 511360 617020 0 0 0 5735 264;2838 5973 29192;29193;29194;29195;29196;29197;29198;29199;29200;29201;29202 29370;29371;29372;29373;29374;29375;29376;29377;29378;29379;29380;29381 29378 12 EAFLQNSSVLDR LQDIKELQHDVQKTKEAFLQNSSVLDRLPQ KTKEAFLQNSSVLDRLPQPAESSTHMLLPG K E A D R L 1 1 1 1 0 1 1 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 12 0 1377.6888 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5444 5455 SYNE2 Nesprin-2 yes no 2 1.0112E-06 117.67 By MS/MS By MS/MS By matching 1 1 1 1.3263 1.0971 18.138 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78538 0.83335 NaN 1 1 Median 1.3495 1.1737 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3263 1.0971 NaN 1 0 Median 8522900 4410900 4112000 0 0 0 0 0 0 7422300 3941900 3480400 734290 286470 447820 0 0 0 366280 182570 183710 5736 3521 5974 29203;29204;29205 29382;29383;29384 29382 3 EAFLVNSDLTLR SYIGLSFQDFYQQCREAFLVNSDLTLRAQL QCREAFLVNSDLTLRAQLTEFRDHKLIRTK R E A L R A 1 1 1 1 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 12 0 1376.73 Q13416 Q13416 522 533 ORC2 Origin recognition complex subunit 2 yes yes 2 2.5339E-05 96.89 By MS/MS By matching By matching 1 1 1 0.826 0.87047 26.265 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.826 0.87047 NaN 1 0 Median 1.1357 0.98371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6762 0.59452 NaN 1 0 Median 4446500 2409600 2037000 0 0 0 0 0 0 3969400 2163600 1805800 171950 78217 93730 0 0 0 305180 167740 137440 5737 2813 5975 29206;29207;29208 29385 29385 1 EAFNMIDQNR NVFAMFDQSQIQEFKEAFNMIDQNRDGFID IQEFKEAFNMIDQNRDGFIDKEDLHDMLAS K E A N R D 1 1 2 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 10 0 1236.5557 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3 41 50 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 5.2125E-22 193.41 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.89032 0.84869 34.702 5 Median 1.2976 1.2487 32.028 2 2 Median 0.89032 0.73715 NaN 1 0 Median 0.8834 0.84869 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.60014 0.63488 NaN 1 0 Median NaN NaN NaN 0 0 Median 94762000 44423000 50340000 38318000 16528000 21790000 40148000 18682000 21465000 13849000 7528200 6320800 0 0 0 2447300 1683900 763360 0 0 0 5738 1352;2127 5976 29209;29210;29211;29212;29213 29386;29387;29388;29389;29390;29391;29392;29393 29392 8 EAFQLFDR ______________________________ DQTAEFKEAFQLFDRTGDGKILYSQCGDVM K E A D R T 1 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1024.4978 F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;G3V1Y7 F8W1R7 14 21 MYL6 Myosin light polypeptide 6 yes no 2 0.0023555 114.78 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 1.1643 1.0384 11.932 8 Median 1.1822 1.1443 7.4482 2 0 Median 1.1661 0.98369 1.3748 2 0 Median 0.84723 0.85674 NaN 1 0 Median 1.394 1.1127 NaN 1 0 Median 1.0429 1.103 NaN 1 0 Median 1.1835 0.8831 NaN 1 0 Median 77859000 36454000 41405000 26725000 12377000 14348000 13320000 6367200 6953000 22654000 11499000 11155000 239690 121820 117860 1526000 799820 726130 13395000 5289300 8105300 5739 1082 5977 29214;29215;29216;29217;29218;29219;29220;29221 29394;29395;29396;29397;29398;29399;29400;29401;29402 29399 9 EAFQPQEPDFPPPPPDLEQLR LDSGYRILGAVAKVREAFQPQEPDFPPPPP EPDFPPPPPDLEQLRLTDELAPPKPPLPEG R E A L R L 1 1 0 2 0 3 3 0 0 0 2 0 0 2 7 0 0 0 0 0 0 0 21 0 2446.1805 P18206 P18206 833 853 VCL Vinculin yes yes 3 0.054103 16.506 By MS/MS 1 0.41714 0.4481 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41714 0.4481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 787320 540920 246400 0 0 0 0 0 0 787320 540920 246400 0 0 0 0 0 0 0 0 0 5740 2057 5978 29222 29403 29403 1 EAFQSVVLPAFEK AAADTLQGPMQAAYREAFQSVVLPAFEKSC YREAFQSVVLPAFEKSCQAMFQQINDSFRL R E A E K S 2 0 0 0 0 1 2 0 0 0 1 1 0 2 1 1 0 0 0 2 0 0 13 0 1463.766 Q6P2E9;I3L2F4 Q6P2E9 1116 1128 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 0.0025189 47.559 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.0666 0.99238 46.855 6 Median 1.0768 1.0371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9877 1.0613 49.169 2 0 Median 1.0564 0.94961 NaN 1 0 Median 2.1801 2.2383 NaN 1 0 Median 0.71439 0.62102 NaN 1 0 Median 10260000 5223600 5036100 3711200 1723700 1987400 0 0 0 5428000 3078600 2349400 241340 108030 133310 783950 274870 509070 95241 38372 56869 5741 3155 5979 29223;29224;29225;29226;29227;29228 29404 29404 1 EAFSLFDKDGDGTITTK ______________________________ FSLFDKDGDGTITTKELGTVMRSLGQNPTE K E A T K E 1 0 0 3 0 0 1 2 0 1 1 2 0 2 0 1 3 0 0 0 0 0 17 1 1843.884 P0DP25;P0DP24;P0DP23;A0A590UK56;E7EMB3;F8WBR5;M0QZ52;G3V479 P0DP25 15 31 CALM2;CALM3;CALM1 yes no 2;3 1.5042E-11 125.54 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 3 3 1 2 1 0.98225 0.99108 13.835 13 Median 0.92455 0.92296 10.623 3 0 Median 1.166 1.0307 2.4834 3 0 Median 1.0412 1.0478 22.453 3 0 Plateau 1.0977 0.98568 NaN 1 0 Median 0.82114 0.94406 21.143 2 0 Median 1.3015 1.0978 NaN 1 0 Median 89395000 44242000 45154000 28412000 16634000 11778000 1275300 555120 720150 45243000 21086000 24157000 165020 86458 78562 14027000 5763500 8263400 272740 116100 156640 5742 1931 5980 29229;29230;29231;29232;29233;29234;29235;29236;29237;29238;29239;29240;29241 29405;29406;29407;29408;29409;29410;29411;29412;29413 29406 9 EAFTADGDQVFAGR ARAVMQSQKPPKNCREAFTADGDQVFAGRY REAFTADGDQVFAGRYYSSENTRPKFLSRD R E A G R Y 3 1 0 2 0 1 1 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 14 0 1482.6739 Q96SB8;C9JMN1 Q96SB8 635 648 SMC6 Structural maintenance of chromosomes protein 6 yes no 2 0.00034078 73.781 By MS/MS 1 1.0174 1.0646 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0174 1.0646 NaN 1 1 Median NaN NaN NaN 0 0 Median 4823200 2143500 2679700 0 0 0 0 0 0 0 0 0 0 0 0 4823200 2143500 2679700 0 0 0 5743 3733 5981 29242 29414 29414 1 EAFTNKPNVFTVVTR GCQPSRVQAQGPGLKEAFTNKPNVFTVVTR EAFTNKPNVFTVVTRGAGIGGLGITVEGPS K E A T R G 1 1 2 0 0 0 1 0 0 0 0 1 0 2 1 0 3 0 0 3 0 0 15 1 1721.9101 O75369;E7EN95 O75369 1340 1354 FLNB Filamin-B yes no 2;3 0.00040281 66.267 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 0.85368 0.82585 31.192 9 Median 0.82737 0.82585 34.242 5 4 Median 0.85368 0.79467 33.067 3 2 Median NaN NaN NaN 0 0 Median 1.0287 0.95823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207180000 129420000 77754000 127210000 79140000 48074000 79102000 49910000 29192000 0 0 0 861470 372910 488550 0 0 0 0 0 0 5744 1664 5982 29243;29244;29245;29246;29247;29248;29249;29250;29251;29252;29253 29415;29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426;29427;29428;29429 29427 15 EAFVVEEWVK LADPTEYENLFPGLKEAFVVEEWVKETHAD FPGLKEAFVVEEWVKETHADLWPAKQYPLV K E A V K E 1 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 1 0 3 0 0 10 0 1234.6234 P35606;H0YAC7 P35606 803 812 COPB2 Coatomer subunit beta yes no 2 0.0030923 57.96 By MS/MS By matching 3 1 1.0921 1.0716 16.328 4 Median 1.1853 1.0882 6.2419 3 0 Plateau 0.92719 0.81371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16391000 6961800 9429400 14837000 6148700 8688400 1554200 813090 741060 0 0 0 0 0 0 0 0 0 0 0 0 5745 2246 5983 29254;29255;29256;29257 29430;29431 29430 2 EAGAGGLAIAVEGPSK RAEAGVPAEFSIWTREAGAGGLAIAVEGPS AGAGGLAIAVEGPSKAEISFEDRKDGSCGV R E A S K A 4 0 0 0 0 0 2 4 0 1 1 1 0 0 1 1 0 0 0 1 0 0 16 0 1425.7464 P21333;H0Y5C6;Q60FE5 P21333 2265 2280 FLNA Filamin-A no no 2 3.983E-11 152.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 3 1 0.88615 0.7376 17.241 14 Plateau 0.95287 0.95074 12.258 3 0 Plateau 0.76093 0.6672 5.6907 5 1 Median 0.87365 0.95133 3.9699 2 0 Median 0.83959 0.82639 14.468 3 1 Plateau 0.93828 0.98495 NaN 1 0 Median NaN NaN NaN 0 0 Median 307340000 164650000 142680000 102110000 53052000 49057000 163680000 89697000 73982000 27913000 14320000 13592000 9495200 5461700 4033500 4142700 2123900 2018800 0 0 0 5746 2088;3120 5984 29258;29259;29260;29261;29262;29263;29264;29265;29266;29267;29268;29269;29270;29271 29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450;29451;29452;29453;29454;29455;29456;29457;29458;29459 29444 28 EAGAGGLAIAVEGPSKAEISFEDRK RAEAGVPAEFSIWTREAGAGGLAIAVEGPS VEGPSKAEISFEDRKDGSCGVAYVVQEPGD R E A R K D 5 1 0 1 0 0 4 4 0 2 1 2 0 1 1 2 0 0 0 1 0 0 25 2 2501.2762 P21333;H0Y5C6;Q60FE5 P21333 2265 2289 FLNA Filamin-A no no 3;4 1.0791E-24 100.79 By MS/MS 4 0.92877 1.0107 14.322 4 Median 0.92877 1.0107 14.322 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51331000 27286000 24045000 51331000 27286000 24045000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5747 2088;3120 5985 29272;29273;29274;29275 29460;29461;29462;29463;29464 29461 5 EAGAGGLSIAVEGPSK RGEAGVPAEFSIWTREAGAGGLSIAVEGPS AGAGGLSIAVEGPSKAEITFDDHKNGSCGV R E A S K A 3 0 0 0 0 0 2 4 0 1 1 1 0 0 1 2 0 0 0 1 0 0 16 0 1441.7413 Q14315;O75369;E7EN95 O75369 2220 2235 FLNC;FLNB Filamin-C;Filamin-B no no 2 3.4098E-14 122.46 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.35281 0.34003 22.201 7 Median 0.2411 0.23594 1.8662 2 2 Median 0.36805 0.3285 4.8764 2 2 Median 0.32573 0.35847 NaN 1 1 Median 0.41625 0.39386 8.2871 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 384340000 289640000 94699000 170160000 133990000 36169000 173440000 125690000 47757000 26712000 19931000 6781000 14030000 10038000 3992300 0 0 0 0 0 0 5748 1664;2871 5986 29276;29277;29278;29279;29280;29281;29282 29465;29466;29467;29468;29469;29470;29471;29472;29473;29474 29469 10 EAGDVCYADVYR LPPSGSWQDLKDHMREAGDVCYADVYRDGT HMREAGDVCYADVYRDGTGVVEFVRKEDMT R E A Y R D 2 1 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 12 0 1416.598 J3KTL2;Q07955;J3KSR8 J3KTL2 143 154 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 3.6978E-06 112.71 By MS/MS By MS/MS By MS/MS 2 1 3 1.0119 0.98616 17.59 6 Median NaN NaN NaN 0 0 Median 1.3374 1.124 0.37221 2 0 Median 0.87073 0.84818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86023 0.86746 21.881 3 2 Median NaN NaN NaN 0 0 Median 35753000 17188000 18565000 0 0 0 13322000 5401400 7920500 12310000 6072400 6237900 0 0 0 10120000 5713800 4406400 0 0 0 5749 1337 5987 29283;29284;29285;29286;29287;29288 29475;29476;29477;29478;29479;29480;29481;29482;29483 29475 9 EAGEGGEAEAPAAEGGK KSFKLSGFSFKKNKKEAGEGGEAEAPAAEG GEGGEAEAPAAEGGKDEAAGGAAAAAAEAG K E A G K D 5 0 0 0 0 0 5 5 0 0 0 1 0 0 1 0 0 0 0 0 0 0 17 0 1528.6641 P29966 P29966 177 193 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 2 5.4437E-07 88.021 By matching By MS/MS By matching 1 1 1 0.83031 0.71576 8.8509 3 Median 0.69741 0.67646 NaN 1 0 Median 0.93404 0.80464 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83031 0.71576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3713800 1907900 1805900 734430 444940 289490 2767300 1350600 1416800 0 0 0 212020 112430 99590 0 0 0 0 0 0 5750 2175 5988 29289;29290;29291 29484;29485 29485 2 EAGELKPEEEITVGPVQK RSLGEIPIVESEIKKEAGELKPEEEITVGP ELKPEEEITVGPVQKLVTEMGTYATQSALS K E A Q K L 1 0 0 0 0 1 5 2 0 1 1 2 0 0 2 0 1 0 0 2 0 0 18 1 1952.0102 P53618 P53618 496 513 COPB1 Coatomer subunit beta yes yes 2;3 2.5735E-07 93.959 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 2 0.80895 0.79765 38.612 10 Median 0.70767 0.73985 9.8292 2 0 Median 0.82964 0.80223 4.6794 3 0 Median 0.82578 0.94295 NaN 1 0 Median 0.84718 0.807 NaN 1 1 Median 1.9954 2.2354 NaN 1 1 Median 0.65102 0.59005 24.262 2 0 Median 61870000 34346000 27524000 35760000 20748000 15013000 9181000 5044000 4137000 9480600 5022000 4458600 2526600 1496800 1029800 3322800 1170200 2152600 1598900 865270 733580 5751 2472 5989 29292;29293;29294;29295;29296;29297;29298;29299;29300;29301 29486;29487;29488;29489;29490;29491;29492;29493;29494;29495 29488 10 EAGEQGDIEPR QRINIPPQRGPRPIREAGEQGDIEPRRMVR RPIREAGEQGDIEPRRMVRHPDSHQLFIGN R E A P R R 1 1 0 1 0 1 3 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 11 0 1199.5418 Q13283 Q13283 321 331 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 3.2047E-06 157.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 1 1 0.87581 0.78372 13.306 12 Median 0.86652 0.82076 11.722 3 0 Plateau 0.99944 0.8661 14.852 2 0 Median 1.0027 0.98997 15.453 2 0 Median 0.90078 0.78059 3.3082 3 0 Median 0.77313 0.77683 NaN 1 0 Median 0.86072 0.73703 NaN 1 0 Median 53540000 26417000 27123000 16668000 8400400 8267100 23557000 11255000 12302000 3734400 1907000 1827400 4841900 2499500 2342500 3655600 1703700 1951900 1083600 651560 432010 5752 2803 5990 29302;29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313;29314 29496;29497;29498;29499;29500;29501;29502;29503;29504;29505;29506;29507;29508;29509;29510;29511;29512 29503 17 EAGFGGGPNATITTSLK AWQAVEPSDIAACFREAGFGGGPNATITTS GFGGGPNATITTSLKSEGEEEEEEEEEEEE R E A L K S 2 0 1 0 0 0 1 4 0 1 1 1 0 1 1 1 3 0 0 0 0 0 17 0 1619.8155 P07199 P07199 386 402 CENPB Major centromere autoantigen B yes yes 2 1.5608E-05 78.763 By MS/MS By MS/MS By matching 2 1 1 0.93665 0.96598 4.469 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93665 0.96598 4.1966 2 2 Median NaN NaN NaN 0 0 Median 0.8837 0.91027 NaN 1 0 Median 1.194 0.99564 NaN 1 0 Median 21694000 11087000 10607000 0 0 0 0 0 0 15057000 7475900 7581200 0 0 0 5925400 3244400 2681000 711240 366240 344990 5753 1882 5991 29315;29316;29317;29318 29513;29514;29515 29515 3 EAGFLRPVTIFGPIADVAR PVQTKFPAYERVVLREAGFLRPVTIFGPIA LRPVTIFGPIADVAREKLAREEPDIYQIAK R E A A R E 3 2 0 1 0 0 1 2 0 2 1 0 0 2 2 0 1 0 0 2 0 0 19 1 2028.1156 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 628 646 TJP1 Tight junction protein ZO-1 yes no 3 0.00066402 31.462 By matching By matching By MS/MS By matching 1 1 2 1 0.69673 0.83304 9.8828 4 Median 0.66681 0.71309 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69673 0.8636 6.2353 2 0 Median 0.92736 0.83978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3009100 1798500 1210600 675840 436350 239500 74873 51421 23452 2143000 1248900 894190 115320 61854 53470 0 0 0 0 0 0 5754 104 5992 29319;29320;29321;29322;29323 29516;29517;29518 29518 3 EAGGNYTPALTEQEVYAQVAR LEILHTYQKEQRNAKEAGGNYTPALTEQEV TPALTEQEVYAQVARLFKNQEDLLSEFGQF K E A A R L 4 1 1 0 0 2 3 2 0 0 1 0 0 0 1 0 2 0 2 2 0 0 21 0 2266.0866 Q96ST3 Q96ST3 344 364 SIN3A Paired amphipathic helix protein Sin3a yes yes 2;3 1.649E-13 87.18 By MS/MS 2 0.7714 0.84844 1.9793 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7714 0.84844 1.9793 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13746000 7194500 6551600 0 0 0 0 0 0 13746000 7194500 6551600 0 0 0 0 0 0 0 0 0 5755 3737 5993 29324;29325 29519;29520;29521;29522 29519 4 EAGITEKVVFEQTK GLGVIACIGEKLDEREAGITEKVVFEQTKV REAGITEKVVFEQTKVIADNVKDWSKVVLA R E A T K V 1 0 0 0 0 1 3 1 0 1 0 2 0 1 0 0 2 0 0 2 0 0 14 1 1577.8301 P60174;U3KPZ0;U3KQF3 P60174 173 186 TPI1 Triosephosphate isomerase yes no 3 0.0010043 39.068 By matching By MS/MS 1 1 1.2507 1.2067 24.589 2 Median 1.4116 1.4358 NaN 1 0 Median 1.1081 1.0141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10579000 4453700 6125400 7962200 3218400 4743800 2617000 1235300 1381600 0 0 0 0 0 0 0 0 0 0 0 0 5756 2523 5994 29326;29327 29523 29523 1 EAGKEAALAEVADEK TALSGKEADAEANHREAGKEAALAEVADEK EAGKEAALAEVADEKMLSGLTKDLQRSLPP R E A E K M 5 0 0 1 0 0 4 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 15 1 1529.7573 E9PHA2;Q15003;H7C415 E9PHA2 660 674 NCAPH Condensin complex subunit 2 yes no 3 0.031515 27.643 By MS/MS 1 0.84609 0.87453 NaN 1 Median 0.84609 0.87453 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2439800 1438500 1001300 2439800 1438500 1001300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5757 929 5995 29328 29524 29524 1 EAGLAPVPMIIFAK PYIRDVAKQVKARLREAGLAPVPMIIFAKD REAGLAPVPMIIFAKDGHFALEELAQAGYE R E A A K D 3 0 0 0 0 0 1 1 0 2 1 1 1 1 2 0 0 0 0 1 0 0 14 0 1455.816 A0A494C0Q8;A0A494C085;P06132;A0A494C0S8;A0A1B0GVN9;H0Y5R6 A0A494C0Q8 215 228 UROD Uroporphyrinogen decarboxylase yes no 2 0.00049486 68.847 By MS/MS 2 0.87257 0.84093 19.589 2 Median 0.87257 0.84093 19.589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8831300 4767100 4064200 8831300 4767100 4064200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5758 458 5996 29329;29330 29525 29525 1 EAGLVAQHPPAR KLKKERKKEERQRLREAGLVAQHPPARRSG RLREAGLVAQHPPARRSGAELALDYLCRWA R E A A R R 3 1 0 0 0 1 1 1 1 0 1 0 0 0 2 0 0 0 0 1 0 0 12 0 1244.6626 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 84 95 C7orf50 Uncharacterized protein C7orf50 yes no 3 0.054774 13.964 By MS/MS 1 0.51171 0.47877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51171 0.47877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1284400 739710 544680 0 0 0 0 0 0 1284400 739710 544680 0 0 0 0 0 0 0 0 0 5759 718 5997 29331 29526 29526 1 EAGMQPQLQIR STVCTIVTYQMVKTKEAGMQPQLQIRGVGF VKTKEAGMQPQLQIRGVGFDRTLGGLEMEL K E A I R G 1 1 0 0 0 3 1 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 11 0 1269.65 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 252 262 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.00021912 84.476 By MS/MS By MS/MS By matching 1 1 1 1.1051 0.93035 24.149 2 Median NaN NaN NaN 0 0 Median 0.9297 0.78431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3136 1.1036 NaN 1 0 Median 6161800 3637600 2524200 0 0 0 5201300 2972700 2228600 0 0 0 0 0 0 0 0 0 960510 664910 295600 5760 101 5998 29332;29333;29334 29527;29528 29527 2 EAGNINQSLMTLR SERTNRTRAEGNRLREAGNINQSLMTLRTC LREAGNINQSLMTLRTCMDVLRENQMYGTN R E A L R T 1 1 2 0 0 1 1 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1445.7297 A0A2U3TZL8;H7BYN4;Q02241 A0A2U3TZL8 370 382 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 0.00024815 79.693 By MS/MS By matching By matching 1 1 1 1.1807 0.97109 38.512 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8249 0.8777 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6831 1.7885 NaN 1 0 Median 1.1807 0.97109 NaN 1 0 Median 9887500 4216800 5670600 0 0 0 0 0 0 7326400 3326500 3999800 0 0 0 2103200 702500 1400800 457830 187800 270030 5761 407 5999 29335;29336;29337 29529 29529 1 EAGSALLALQQTALQEDQENINPEK ______________________________ QTALQEDQENINPEKAAPVQQPRTRAALAV R E A E K A 4 0 2 1 0 4 4 1 0 1 4 1 0 0 1 1 1 0 0 0 0 0 25 0 2709.3457 P20248 P20248 13 37 CCNA2 Cyclin-A2 yes yes 3 0.0020805 25.213 By MS/MS 1 0.77211 0.76147 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77211 0.76147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4811500 2425400 2386100 0 0 0 0 0 0 4811500 2425400 2386100 0 0 0 0 0 0 0 0 0 5762 2075 6000 29338 29530 29530 1 EAGSEPAPEQESTEATPAE RRHKHKKSKRSKEGKEAGSEPAPEQESTEA EPAPEQESTEATPAE_______________ K E A A E - 4 0 0 0 0 1 6 1 0 0 0 0 0 0 3 2 2 0 0 0 0 0 19 0 1928.8123 Q6UN15;H0Y8P7 Q6UN15 576 594 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 0.021071 34.75 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4123700 0 0 0 0 0 0 0 0 4123700 0 0 0 0 0 0 0 0 0 0 0 5763 3185 6001 29339 29531 29531 1 EAGSQKDENLALYVENQFR TGTIKLLNENSYVPREAGSQKDENLALYVE QKDENLALYVENQFREFKLSKVWRDQHFVK R E A F R E 2 1 2 1 0 2 3 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 19 1 2210.0604 P02786;G3V0E5 P02786 156 174 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 3 0.000506 33.405 By MS/MS By MS/MS 2 1 1.3197 1.3685 18.325 3 Median 1.369 1.4115 4.3692 2 0 Median 1.0333 1.0323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8409600 3555000 4854600 5836000 2456100 3379900 2573500 1098800 1474700 0 0 0 0 0 0 0 0 0 0 0 0 5764 1836 6002 29340;29341;29342 29532;29533;29534;29535 29534 4 EAGTKEEPVTADVINPMALR AKLGLKPLEVNAIKKEAGTKEEPVTADVIN EEPVTADVINPMALRQREELREKLAAAKEK K E A L R Q 3 1 1 1 0 0 3 1 0 1 1 1 1 0 2 0 2 0 0 2 0 0 20 1 2140.0834 O43290 O43290 143 162 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 1.7246E-19 123.19 By MS/MS By MS/MS By matching 1 1 1 0.62073 0.67156 17.485 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59282 0.67156 NaN 1 0 Median 0.81204 0.78038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62073 0.5507 NaN 1 0 Median 16385000 9836300 6548800 0 0 0 0 0 0 15685000 9450100 6235100 521670 260200 261470 0 0 0 178290 125990 52298 5765 1563 6003 29343;29344;29345 29536;29537;29538 29536 3 EAGVEMGDEDDLSTPNEK PTLRLEYCEALAMLREAGVEMGDEDDLSTP VEMGDEDDLSTPNEKLLGHLVKEKYDTDFY R E A E K L 1 0 1 3 0 0 4 2 0 0 1 1 1 0 1 1 1 0 0 1 0 0 18 0 1934.8051 P14868;H7BZ35 P14868 357 374 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 2.3292E-15 115.8 By MS/MS By matching By matching By MS/MS 3 2 1 2 0.94834 0.93714 18.974 8 Median 0.91344 0.90693 6.1541 3 2 Median 1.1359 0.99276 3.5188 2 0 Median 0.79712 0.82027 NaN 1 0 Median 0.92118 0.79126 42.735 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21861000 11166000 10695000 12408000 6258300 6149900 2207700 1088100 1119600 2563100 1199700 1363300 4682000 2620200 2061800 0 0 0 0 0 0 5766 2012 6004;6005 29346;29347;29348;29349;29350;29351;29352;29353 29539;29540;29541;29542;29543;29544 29539 800 5 EAGVFVPR NQASETAVAKNQALKEAGVFVPRSFDELGE AKNQALKEAGVFVPRSFDELGEIIQSVYED K E A P R S 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 2 0 0 8 0 873.47085 P53396 P53396 781 788 ACLY ATP-citrate synthase yes yes 2 0.0044851 81.297 By MS/MS By MS/MS 1 2 0.98783 0.95236 35.174 3 Median 0.98783 0.95236 NaN 1 0 Median 1.3025 1.102 48.295 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52907000 25335000 27572000 9150800 4511600 4639200 43756000 20823000 22932000 0 0 0 0 0 0 0 0 0 0 0 0 5767 2467 6006 29354;29355;29356 29545;29546;29547;29548 29546 4 EAHAQSIGMNR SRLKAFKVALLDVFREAHAQSIGMNRLTES DVFREAHAQSIGMNRLTESINRDSEEPFSS R E A N R L 2 1 1 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 11 0 1212.567 P25205;J3KQ69;A0A499FHX9 P25205 757 767 MCM3 DNA replication licensing factor MCM3 yes no 2;3 0.00056204 76.143 By MS/MS By matching 3 1 1.1196 0.97535 14.497 4 Median NaN NaN NaN 0 0 Median 1.1319 0.98399 2.4917 3 2 Median 0.71234 0.74188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6112900 2801200 3311600 0 0 0 5776600 2600100 3176500 336250 201080 135170 0 0 0 0 0 0 0 0 0 5768 2129 6007 29357;29358;29359;29360 29549;29550;29551;29552 29551 4 EAHEPLAVADAK KINKQLKKVLKKIVKEAHEPLAVADAKLGG IVKEAHEPLAVADAKLGGVIKEKLNLSCIH K E A A K L 4 0 0 1 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1249.6303 Q9Y2X3 Q9Y2X3 82 93 NOP58 Nucleolar protein 58 yes yes 2;3 8.8595E-07 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 6 4 1.0042 0.93278 18.522 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85722 0.85307 3.1169 2 0 Median 1.2289 1.048 19.703 4 0 Median 0.8445 0.8397 14.945 6 1 Median 1.3072 1.0719 14.635 4 0 Median 94432000 49736000 44696000 0 0 0 0 0 0 12469000 6792800 5676200 4132200 1881100 2251100 70084000 38002000 32082000 7747100 3059800 4687300 5769 4396 6008 29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376 29553;29554;29555;29556;29557;29558;29559;29560;29561;29562;29563;29564;29565;29566;29567;29568 29560 16 EAHKPPVFIEK AGQNSFSLELVVAAKEAHKPPVFIEKLQNT VAAKEAHKPPVFIEKLQNTGVADGYPVRLE K E A E K L 1 0 0 0 0 0 2 0 1 1 0 2 0 1 2 0 0 0 0 1 0 0 11 1 1293.7081 Q8WX93;H0YA05 Q8WX93 1229 1239 PALLD Palladin yes no 3 0.030511 22.72 By MS/MS By matching By matching 1 2 2 0.80688 0.83663 20.197 5 Median 0.80688 0.83663 NaN 1 0 Median 0.82272 0.7853 12.701 2 0 Median NaN NaN NaN 0 0 Median 0.69575 0.68752 34.04 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4137400 2154000 1983400 1124700 630120 494570 2302600 1123400 1179200 0 0 0 710050 400430 309610 0 0 0 0 0 0 5770 3515 6009 29377;29378;29379;29380;29381 29569 29569 1 EAHLTPYSLQAIK LDPKVKAAFTRAYNKEAHLTPYSLQAIKAS NKEAHLTPYSLQAIKASRHSTSPSLDSEYN K E A I K A 2 0 0 0 0 1 1 0 1 1 2 1 0 0 1 1 1 0 1 0 0 0 13 0 1469.7878 P35251;H0Y9P8 P35251 1069 1081 RFC1 Replication factor C subunit 1 yes no 2;3 3.1534E-09 129.85 By matching By MS/MS By matching 1 2 1 1.1012 1.0512 13.263 4 Median NaN NaN NaN 0 0 Median 1.3017 1.1374 NaN 1 0 Median 0.87074 0.9315 15.039 2 1 Median 1.2524 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17953000 9537700 8415100 0 0 0 649350 211110 438230 16909000 9082100 7826900 394470 244480 149990 0 0 0 0 0 0 5771 2239 6010 29382;29383;29384;29385 29570;29571;29572 29572 3 EAHQLFLEPEVLDPESVELK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE FLEPEVLDPESVELKWSEPNEEELIKFMCG K E A L K W 1 0 0 1 0 1 5 0 1 0 4 1 0 1 2 1 0 0 0 2 0 0 20 0 2321.1791 P39748;I3L3E9 P39748 278 297 FEN1 Flap endonuclease 1 yes no 2;3 2.086E-19 116.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 4 2 1 2 0.78162 0.69484 29.446 14 Median 0.85878 0.86669 49.472 2 0 Median 0.78733 0.67106 17.476 3 0 Median 0.71765 0.72761 18.423 4 0 Median 0.77883 0.6751 2.0363 2 0 Median 0.77595 0.74646 NaN 1 0 Median 1.3261 1.0835 63.583 2 0 Median 115420000 65611000 49813000 5394800 3246600 2148200 12485000 7597000 4887500 91474000 51547000 39926000 1880400 1015500 864920 1348300 847490 500840 2842900 1357600 1485200 5772 2283 6011 29386;29387;29388;29389;29390;29391;29392;29393;29394;29395;29396;29397;29398;29399 29573;29574;29575;29576;29577;29578;29579;29580;29581;29582;29583;29584;29585;29586 29577 14 EAIAELER EIQRQQSDHDAERLREAIAELEREKEKLQQ HDAERLREAIAELEREKEKLQQEAKLLQLK R E A E R E 2 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 929.48181 Q15149 Q15149 2587 2594 PLEC Plectin yes yes 2 0.00016457 117.1 By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 0.97194 0.88124 41.92 5 Median NaN NaN NaN 0 0 Median 0.97194 0.77678 NaN 1 1 Median 0.79977 0.88124 NaN 1 0 Median 1.1231 0.97821 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70952 0.58451 69.36 2 1 Median 83409000 44975000 38434000 0 0 0 36536000 23132000 13404000 2759200 1308500 1450700 3242200 1446300 1795900 0 0 0 40871000 19088000 21783000 5773 2933 6012 29400;29401;29402;29403;29404;29405 29587;29588;29589;29590 29590 4 EAIAELEREKEK EIQRQQSDHDAERLREAIAELEREKEKLQQ RLREAIAELEREKEKLQQEAKLLQLKSEEM R E A E K L 2 1 0 0 0 0 5 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 12 2 1443.7569 Q15149 Q15149 2587 2598 PLEC Plectin yes yes 3 0.0031519 37.426 By MS/MS By matching 2 1 0.91961 1.0008 26.067 3 Median 0.79478 0.81776 28.559 2 0 Median 1.154 1.0879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4967400 2459400 2507900 3974500 2178500 1796000 992870 280910 711960 0 0 0 0 0 0 0 0 0 0 0 0 5774 2933 6013 29406;29407;29408 29591 29591 1 EAIAMLHK RRFALTFGLDQLKTREAIAMLHKDGIEFAF LDQLKTREAIAMLHKDGIEFAFKEPNPQGE R E A H K D 2 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 911.48987 Q8N3U4 Q8N3U4 968 975 STAG2 Cohesin subunit SA-2 yes yes 2 0.013372 53.163 By MS/MS 1 1.1122 0.93839 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1122 0.93839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1655000 766960 888060 0 0 0 0 0 0 0 0 0 1655000 766960 888060 0 0 0 0 0 0 5775 3369 6014 29409 29592;29593 29592 2 EAIANYVK LTPLFISIDPERDTKEAIANYVKEFSPKLV DPERDTKEAIANYVKEFSPKLVGLTGTREE K E A V K E 2 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 8 0 906.48108 J3QL56;O75880 J3QL56 180 187 SCO1 Protein SCO1 homolog, mitochondrial yes no 2 0.023061 64.803 By MS/MS By MS/MS 1 1 1.4434 1.2828 32.046 2 Median 1.097 1.0227 NaN 1 1 Median 1.8992 1.6091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6563100 2812600 3750500 4339800 2066900 2272900 2223300 745660 1477600 0 0 0 0 0 0 0 0 0 0 0 0 5776 1339 6015 29410;29411 29594;29595 29595 2 EAIDSPVSFLALHNQIR HQTGLKVVRLCAKSREAIDSPVSFLALHNQ IDSPVSFLALHNQIRNMDSMPELQKLQQLK R E A I R N 2 1 1 1 0 1 1 0 1 2 2 0 0 1 1 2 0 0 0 1 0 0 17 0 1909.0058 Q92900 Q92900 561 577 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.0063446 24.793 By MS/MS By matching By matching By matching 1 1 2 1 0.89828 0.76838 53.129 5 Median 1.0668 1.0375 NaN 1 0 Median 0.89828 0.76838 NaN 1 0 Median 0.31719 0.36779 44.984 2 0 Median 0.9184 0.8088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8108100 4529000 3579100 3245100 1419000 1826100 2364100 1211100 1153000 2285700 1778500 507140 213170 120270 92903 0 0 0 0 0 0 5777 3564 6016 29412;29413;29414;29415;29416 29596;29597 29596 2 EAIDSYIK WSQLAKAQLQKGMVKEAIDSYIKADDPSSY LQKGMVKEAIDSYIKADDPSSYMEVVQAAN K E A I K A 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 1 0 0 0 8 0 937.47566 A0A087WVQ6;Q00610 A0A087WVQ6 1127 1134 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.005111 81.784 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1 1.3941 1.2467 24.257 8 Median 1.3123 1.266 NaN 1 1 Median 1.4307 1.2647 31.029 3 0 Median 0.90264 0.9885 6.6724 2 0 Median 1.3606 1.2289 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.69 1.449 NaN 1 0 Median 70516000 28587000 41929000 15258000 5497900 9760300 37088000 13815000 23273000 13790000 7475200 6315200 3312100 1388700 1923400 0 0 0 1068100 410810 657250 5778 44 6017 29417;29418;29419;29420;29421;29422;29423;29424 29598;29599;29600;29601;29602;29603;29604;29605;29606;29607;29608;29609 29599 12 EAIEGTYIDK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL K E A D K K 1 0 0 1 0 0 2 1 0 2 0 1 0 0 0 0 1 0 1 0 0 0 10 0 1137.5554 M0QZC5;P62280 M0QZC5 49 58 RPS11 40S ribosomal protein S11 yes no 2 0.00033784 96.331 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 1.1174 0.97007 7.2328 7 Median 1.0448 0.97452 4.794 2 0 Median 1.1174 0.95566 NaN 1 0 Median 1.2071 1.1312 NaN 1 0 Median 1.2732 1.0524 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1554 0.94411 3.837 2 0 Median 95803000 42832000 52971000 66111000 30288000 35823000 14161000 6297500 7863900 11077000 4340100 6737100 1291700 521590 770130 0 0 0 3161200 1384700 1776500 5779 1422 6018 29425;29426;29427;29428;29429;29430;29431 29610;29611;29612;29613;29614;29615;29616;29617;29618 29610 9 EAIEGTYIDKK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT KTPKEAIEGTYIDKKCPFTGNVSIRGRILS K E A K K C 1 0 0 1 0 0 2 1 0 2 0 2 0 0 0 0 1 0 1 0 0 0 11 1 1265.6503 M0QZC5;P62280 M0QZC5 49 59 RPS11 40S ribosomal protein S11 yes no 2;3 0.0001974 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 2 2 4 3 1.2592 1.1739 23.438 24 Median 1.0792 1.0917 18.618 7 0 Median 1.1764 1.0594 15.097 6 0 Median 1.2758 1.2698 0.25747 2 0 Median 1.423 1.2819 10.879 2 1 Median 1.3238 1.4787 31.833 4 0 Median 1.3572 1.1503 2.1065 3 0 Plateau 613110000 279210000 333900000 463710000 214850000 248870000 75639000 33233000 42406000 32238000 13703000 18535000 12493000 4814100 7678400 13433000 5713300 7719700 15594000 6896800 8697400 5780 1422 6019 29432;29433;29434;29435;29436;29437;29438;29439;29440;29441;29442;29443;29444;29445;29446;29447;29448;29449;29450;29451;29452;29453;29454;29455 29619;29620;29621;29622;29623;29624;29625;29626;29627;29628;29629;29630;29631;29632;29633;29634;29635;29636;29637;29638;29639;29640;29641;29642;29643;29644;29645;29646;29647;29648;29649;29650;29651 29646 33 EAIENATTNAEVLR LAQTDGTLSTLEFQREAIENATTNAEVLRT REAIENATTNAEVLRTMELAAQSMKKAYQD R E A L R T 3 1 2 0 0 0 3 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 14 0 1529.7686 Q9BY43;E9PQI5;E9PQ80;E9PSI1 Q9BY43 91 104 CHMP4A Charged multivesicular body protein 4a yes no 2 0.0091951 34.773 By MS/MS 1 1.2844 1.2926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2844 1.2926 NaN 1 0 Median NaN NaN NaN 0 0 Median 24831000 12179000 12652000 0 0 0 0 0 0 0 0 0 0 0 0 24831000 12179000 12652000 0 0 0 5781 3885 6020 29456 29652 29652 1 EAIESAIGGNAYQHSK EETAFVVDEVSNIVKEAIESAIGGNAYQHS AIESAIGGNAYQHSKVNQWTTNVVEQTLSQ K E A S K V 3 0 1 0 0 1 2 2 1 2 0 1 0 0 0 2 0 0 1 0 0 0 16 0 1673.8009 P63172 P63172 23 38 DYNLT1 Dynein light chain Tctex-type 1 yes yes 2;3 2.0949E-76 234.63 By MS/MS By MS/MS By MS/MS 2 3 2 0.43084 0.36539 67.423 6 Median 0.19665 0.17762 NaN 1 1 Median 0.66392 0.58042 69.52 3 1 Median 0.39912 0.38035 72.439 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239490000 189240000 50252000 36775000 32061000 4714800 138330000 105240000 33097000 64380000 51940000 12440000 0 0 0 0 0 0 0 0 0 5782 2621 6021 29457;29458;29459;29460;29461;29462;29463 29653;29654;29655;29656;29657;29658 29656 6 EAIHSQLLEK NMYEGVGRMFILQSKEAIHSQLLEKQKIAE ILQSKEAIHSQLLEKQKIAEEKIKELEQKK K E A E K Q 1 0 0 0 0 1 2 0 1 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1166.6295 O60925;E5RGS4 O60925 74 83 PFDN1 Prefoldin subunit 1 yes no 2 0.0021488 100.02 By MS/MS 1 1.1883 0.97713 NaN 1 Median NaN NaN NaN 0 0 Median 1.1883 0.97713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19385000 8693500 10692000 0 0 0 19385000 8693500 10692000 0 0 0 0 0 0 0 0 0 0 0 0 5783 841 6022 29464 29659 29659 0 EAIIPGSVYDR NPGARFMTTAMYDAREAIIPGSVYDRSSQG YDAREAIIPGSVYDRSSQGRPSSMYFQTHD R E A D R S 1 1 0 1 0 0 1 1 0 2 0 0 0 0 1 1 0 0 1 1 0 0 11 0 1218.6245 Q92900 Q92900 950 960 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00011638 134.25 By MS/MS By MS/MS 1 1 0.91101 0.82462 32.256 2 Median 1.0755 1.0359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77168 0.65645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16402000 7582900 8818800 13471000 6053000 7417600 0 0 0 0 0 0 2931200 1530000 1401300 0 0 0 0 0 0 5784 3564 6023 29465;29466 29660;29661;29662 29661 3 EAIIVGSIITK GILIPLCESGTCTLREAIIVGSIITKCSIP CTLREAIIVGSIITKCSIPVLHSSAAMLKI R E A T K C 1 0 0 0 0 0 1 1 0 4 0 1 0 0 0 1 1 0 0 1 0 0 11 0 1142.6911 Q13895 Q13895 304 314 BYSL Bystin yes yes 2 0.0063927 44.318 By matching By matching By matching By MS/MS 1 1 1 2 1.1406 1.0869 18.098 5 Median NaN NaN NaN 0 0 Median 1.191 1.0528 NaN 1 0 Median 1.441 1.424 NaN 1 0 Median 0.95975 0.85692 NaN 1 0 Median 1.1336 1.101 1.8262 2 0 Median NaN NaN NaN 0 0 Median 12377000 6471600 5905600 0 0 0 666690 321560 345130 3937600 2110300 1827400 2760500 1620300 1140200 5012400 2419500 2592900 0 0 0 5785 2845 6024 29467;29468;29469;29470;29471 29663 29663 1 EAILAIHK HDQFKSTLPDADREREAILAIHKEAQRIAE PDADREREAILAIHKEAQRIAESNHIKLSG R E A H K E 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 893.53345 O43707;F5GXS2;H7C144 O43707 585 592 ACTN4 Alpha-actinin-4 yes no 2 0.0077379 65.803 By MS/MS By MS/MS By MS/MS 2 2 1 1.0568 0.96703 14.242 5 Median 1.169 1.1495 4.5146 2 0 Median 1.0238 0.87789 7.2753 2 0 Median 0.90325 0.96703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69012000 32873000 36139000 16749000 7378500 9370800 50038000 24423000 25615000 2225300 1071600 1153800 0 0 0 0 0 0 0 0 0 5786 1585 6025 29472;29473;29474;29475;29476 29664;29665;29666;29667;29668;29669;29670;29671;29672;29673 29671 10 EAILDIITSR AEALYTAMKGFGSDKEAILDIITSRSNRQR FGSDKEAILDIITSRSNRQRQEVCQSYKSL K E A S R S 1 1 0 1 0 0 1 0 0 3 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1129.6343 E5RK69;E5RFF0;E5RIU8;E5RJR0;P08133;E7EMC6;E5RK63;E5RI05;E5RJF5 P08133 41 50 ANXA6 Annexin;Annexin A6 no no 2 0.0014621 65.305 By matching By MS/MS 2 2 1.2665 1.1865 9.8642 4 Median 1.0847 1.0907 13.178 2 0 Median 1.3785 1.2078 3.7844 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9769200 3939300 5829900 1827500 669410 1158100 7941700 3269900 4671800 0 0 0 0 0 0 0 0 0 0 0 0 5787 1898;854 6026 29477;29478;29479;29480 29674 29674 1 EAILEYILHQK CHDPVVTPDGYLYEREAILEYILHQKKEIA LYEREAILEYILHQKKEIARQMKAYEKQRG R E A Q K K 1 0 0 0 0 1 2 0 1 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1355.7449 Q9Y314;M0R3B2;A0A075B6F9;A0A075B797;M0R1K2;M0QX85 Q9Y314 68 78 NOSIP Nitric oxide synthase-interacting protein yes no 2 0.0039952 48.796 By matching By MS/MS 1 1 1.0801 0.98656 12.836 2 Median 1.1044 1.0803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0562 0.90096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3291300 1583900 1707400 2460500 1183100 1277400 0 0 0 0 0 0 830790 400850 429940 0 0 0 0 0 0 5788 4401 6027 29481;29482 29675;29676 29675 2 EAINLLEPMTNDPVNYVR AAMALGICCAGTGNKEAINLLEPMTNDPVN NLLEPMTNDPVNYVRQGALIASALIMIQQT K E A V R Q 1 1 3 1 0 0 2 0 0 1 2 0 1 0 2 0 1 0 1 2 0 0 18 0 2087.0357 A0A087WW66;Q99460 A0A087WW66 667 684 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2;3 6.028E-12 109.24 By MS/MS By matching By MS/MS 2 1 1 0.79363 0.80924 27.957 4 Median 0.73157 0.71955 0.39617 2 0 Median 1.4825 1.3005 NaN 1 0 Median 0.84775 0.90755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9911400 5313000 4598300 8294200 4460800 3833400 364270 151020 213250 1252900 701180 551710 0 0 0 0 0 0 0 0 0 5789 54 6028 29483;29484;29485;29486 29677;29678;29679;29680;29681 29678 5 EAINVEQAFQTIAR CYSKNNIPYFETSAKEAINVEQAFQTIARN KEAINVEQAFQTIARNALKQETEVELYNEF K E A A R N 3 1 1 0 0 2 2 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 14 0 1588.8209 P51149;C9J8S3;C9J4V0;C9J4S4 P51149 158 171 RAB7A Ras-related protein Rab-7a yes no 2;3 8.131E-43 220.25 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 1.1664 1.0943 68.089 11 Median 1.0989 1.0367 100.36 5 0 Median 1.0132 0.86115 14.168 3 0 Median 1.2313 1.1623 5.6162 2 0 Median NaN NaN NaN 0 0 Median 1.8726 1.8438 NaN 1 0 Median NaN NaN NaN 0 0 Median 69885000 30303000 39582000 61669000 27005000 34665000 1672900 753230 919660 4123400 1758200 2365200 0 0 0 2419100 786910 1632200 0 0 0 5790 2428 6029 29487;29488;29489;29490;29491;29492;29493;29494;29495;29496;29497 29682;29683;29684;29685;29686;29687;29688;29689;29690;29691 29684 10 EAIQLIAR EATLVVGGDGRFYMKEAIQLIARIAAANGI DGRFYMKEAIQLIARIAAANGIGRLVIGQN K E A A R I 2 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 912.53927 P36871;A0A3B3ITK7 P36871 69 76 PGM1 Phosphoglucomutase-1 yes no 2 0.0040847 83.614 By MS/MS By MS/MS By matching 2 2 2 1.1854 1.0752 21.786 6 Median 1.0234 0.98182 0.066376 2 0 Median 1.3627 1.1833 0.75821 2 0 Median 1.08 1.0666 44.973 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55100000 25309000 29790000 30395000 15301000 15094000 11101000 4328400 6772800 13603000 5679700 7923600 0 0 0 0 0 0 0 0 0 5791 2262 6030 29498;29499;29500;29501;29502;29503 29692;29693;29694;29695 29693 4 EAIQQQQNQLVWVSEGK INLNSMNDGWYGALKEAIQQQQNQLVWVSE IQQQQNQLVWVSEGKADGATSDDLDLHDDR K E A G K A 1 0 1 0 0 5 2 1 0 1 1 1 0 0 0 1 0 1 0 2 0 0 17 0 1984.0014 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 776 792 TJP1 Tight junction protein ZO-1 yes no 2 0.00049671 42.095 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 1 1 0.9646 0.98279 18.446 8 Median 0.83078 0.79417 NaN 1 0 Median 1.4261 1.2445 NaN 1 0 Median 0.9646 1.0577 2.1782 2 0 Median 0.99689 0.87908 29.983 2 0 Median 0.83296 0.87221 NaN 1 0 Median 1.072 0.92732 NaN 1 0 Median 16988000 8871700 8116000 2873100 1592400 1280600 339440 168470 170970 6717200 3579000 3138200 530130 233660 296460 6266700 3178200 3088500 261160 119970 141190 5792 104 6031 29504;29505;29506;29507;29508;29509;29510;29511 29696;29697;29698;29699 29699 4 EAISDAALEATENEPLNK IKTSIEVKATENCAKEAISDAALEATENEP SDAALEATENEPLNKETEEMCVMLVSNLPN K E A N K E 4 0 2 1 0 0 4 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 18 0 1913.9218 Q14966 Q14966 882 899 ZNF638 Zinc finger protein 638 yes yes 2 1.5959E-13 122.34 By MS/MS By matching By matching 2 2 1 0.87012 0.78447 28.654 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88455 0.97915 44.613 2 0 Median 0.98956 0.86262 13.43 2 0 Median 0.61654 0.65079 NaN 1 0 Median NaN NaN NaN 0 0 Median 14483000 7966800 6516300 0 0 0 0 0 0 10821000 5991900 4829400 1037200 485440 551720 2624700 1489500 1135200 0 0 0 5793 2903 6032 29512;29513;29514;29515;29516 29700;29701 29700 2 EAISDLQQLWK IREAANFKLKYGRKKEAISDLQQLWKQNPK GRKKEAISDLQQLWKQNPKDIHTLAQLISA K E A W K Q 1 0 0 1 0 2 1 0 0 1 2 1 0 0 0 1 0 1 0 0 0 0 11 0 1329.6929 O76094 O76094 465 475 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.00013385 118.5 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.3157 1.1469 18.999 5 Median 1.0942 1.0487 NaN 1 0 Median 1.4975 1.3015 29.307 2 0 Median 1.3424 1.4266 NaN 1 0 Median 1.3157 1.1469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14527000 6189700 8337300 3701600 1676300 2025400 6209400 2555100 3654300 4071700 1732800 2338900 544250 225540 318700 0 0 0 0 0 0 5794 1721 6033 29517;29518;29519;29520;29521 29702;29703;29704;29705;29706;29707 29706 6 EAITHLLGVALTR LENPTINHQKNRPTREAITHLLGVALTRYN TREAITHLLGVALTRYNHMLSATVKIIQML R E A T R Y 2 1 0 0 0 0 1 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1392.8089 Q15021;E7EN77 Q15021 221 233 NCAPD2 Condensin complex subunit 1 yes no 2;3 0.00045482 73.067 By MS/MS By matching By matching By matching 4 3 2 2 1.2184 1.2319 25.573 11 Median 1.6658 1.6609 20.441 4 0 Median 1.1625 0.99498 11.67 3 0 Median 1.0465 1.1315 14.941 2 0 Median 1.2774 1.1193 19.728 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21843000 9461200 12382000 14226000 5862300 8363700 4927200 2408800 2518400 2420000 1064900 1355100 270300 125280 145030 0 0 0 0 0 0 5795 2915 6034 29522;29523;29524;29525;29526;29527;29528;29529;29530;29531;29532 29708;29709;29710 29709 3 EAIVAALLTR RQEFIRIRPNREGDREAIVAALLTRTFTDH REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E A T R T 3 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1055.6339 B7Z6D5;Q96GQ7 B7Z6D5 420 429 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.00041856 75.378 By matching By matching By MS/MS By matching 1 1 2 2 1.3143 1.2081 12.336 6 Median NaN NaN NaN 0 0 Median 1.2029 1.088 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8981 1.5701 NaN 1 0 Median 1.153 1.196 1.0489 2 0 Median 1.4515 1.2238 1.4454 2 0 Median 6066500 2712900 3353600 0 0 0 946930 407180 539750 0 0 0 146800 51444 95355 4244000 1970700 2273200 728810 283530 445270 5796 635 6035 29533;29534;29535;29536;29537;29538 29711;29712 29711 2 EAIVNSCVFVHQTLHQANAR MPVVYDKLPQPPSHREAIVNSCVFVHQTLH SCVFVHQTLHQANARLAKRGGRTMAITPRH R E A A R L 3 1 2 0 1 2 1 0 2 1 1 0 0 1 0 1 1 0 0 3 0 0 20 0 2293.1386 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3141 3160 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 1.5819E-14 106.93 By MS/MS By MS/MS By matching 1 1 1 1.0929 1.1379 10.78 3 Plateau NaN NaN NaN 0 0 Median 1.3917 1.1217 NaN 1 0 Median 1.0929 1.1511 NaN 1 0 Median 1.0879 0.94408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27611000 12300000 15311000 0 0 0 13340000 6123700 7215800 13897000 6027600 7869200 374620 148240 226380 0 0 0 0 0 0 5797 2865 6036 29539;29540;29541 29713;29714;29715 29713 3 EAIVTSEELGQDLEHVEVLQK YLRECEDVMDWINDKEAIVTSEELGQDLEH EELGQDLEHVEVLQKKFEEFQTDMAAHEER K E A Q K K 1 0 0 1 0 2 5 1 1 1 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2365.2013 A0A0D9SF54;Q13813 Q13813 169 189 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00066258 43.598 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 3 1 1 1.1646 1.0283 24.049 9 Median 1.5015 1.4142 NaN 1 0 Median 1.1646 1.0361 13.392 3 0 Median 0.8386 0.92997 23.479 3 2 Median 1.1794 1.0283 NaN 1 0 Median 1.2617 1.3054 NaN 1 0 Median NaN NaN NaN 0 0 Median 36743000 17635000 19108000 1847900 699390 1148500 17228000 7574900 9652900 16865000 9041800 7822900 155710 50698 105010 646550 268210 378340 0 0 0 5798 264;2838 6037 29542;29543;29544;29545;29546;29547;29548;29549;29550 29716;29717;29718;29719;29720 29719 5 EAIYSGYIR LVLSKEDFEKKEKNKEAIYSGYIRNRKPSD KKEKNKEAIYSGYIRNRKPSDSVHITNDDE K E A I R N 1 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 0 9 0 1070.5397 A6NHR9 A6NHR9 280 288 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.022337 54.157 By MS/MS 1 1.1863 1.0418 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1863 1.0418 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2302600 975820 1326800 0 0 0 0 0 0 0 0 0 2302600 975820 1326800 0 0 0 0 0 0 5799 518 6038 29551 29721 29721 1 EAKPDELMDSK IFAPPNTSDMEAVWKEAKPDELMDSKLRCV AVWKEAKPDELMDSKLRCVFEMPNENDKLN K E A S K L 1 0 0 2 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 0 11 1 1261.586 Q9P0L0 Q9P0L0 115 125 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2 0.027587 45.368 By MS/MS By matching By matching 1 1 1 1.0822 1.0565 37.73 3 Median 1.0822 1.0565 NaN 1 0 Median 0.89896 0.82392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9693 1.7292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6912300 3633300 3279000 4793800 2629400 2164400 1238200 674520 563670 0 0 0 880260 329400 550870 0 0 0 0 0 0 5800 4205 6039 29552;29553;29554 29722 29722 1 EAKPEDLMDSK MFAPTDTSDMEAVWKEAKPEDLMDSKLRCV AVWKEAKPEDLMDSKLRCVFELPAENDKPH K E A S K L 1 0 0 2 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 0 11 1 1261.586 O95292 O95292 108 118 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 3 0.02677 29.341 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 1 1 0.95648 0.90529 17.3 7 Median 0.83425 0.82945 12.372 2 0 Median 0.84773 0.77055 25.024 2 0 Median 0.95648 1.0068 NaN 1 0 Median 0.98521 0.86509 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2431 1.0789 NaN 1 0 Median 10812000 6084600 4727800 4897000 3031000 1866000 2396300 1337100 1059200 1112700 615700 496990 1981500 904050 1077400 0 0 0 424940 196680 228260 5801 1760 6040 29555;29556;29557;29558;29559;29560;29561;29562 29723;29724;29725;29726;29727;29728;29729;29730 29729 8 EALAFIIR LFEGLKFFLNREVPREALAFIIRSFGGEVS LNREVPREALAFIIRSFGGEVSWDKSLCIG R E A I R S 2 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 B5MCF9;O00541;B3KXD6 B5MCF9 324 331 PES1 Pescadillo homolog yes no 2 0.0044705 81.381 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 4 2 1.1986 1.1413 11.377 10 Median 1.4256 1.4429 NaN 1 0 Median 1.2508 1.0828 NaN 1 0 Median 0.94729 0.96844 NaN 1 0 Median 1.308 1.1276 NaN 1 0 Median 1.13 1.1685 4.9768 4 0 Median 1.3079 1.1005 14.654 2 0 Median 32923000 15227000 17696000 1855200 691410 1163800 5107500 2271000 2836600 8022200 3938500 4083800 207390 108140 99254 15910000 7352000 8557500 1820800 865790 954970 5802 618 6041 29563;29564;29565;29566;29567;29568;29569;29570;29571;29572 29731;29732;29733;29734;29735;29736;29737;29738;29739 29739 9 EALDLGITGPEGIEISRPEELEAEATHR RVHAENGELVAEGAKEALDLGITGPEGIEI EISRPEELEAEATHRVITIANRTHCPIYLV K E A H R V 3 2 0 1 0 0 7 3 1 3 3 0 0 0 2 1 2 0 0 0 0 0 28 1 3031.5098 Q9BPU6 Q9BPU6 204 231 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 4 0.014531 16.938 By MS/MS By MS/MS 1 1 0.74452 0.70427 10.179 2 Median 0.76818 0.75683 NaN 1 1 Median 0.7216 0.65536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10066000 5511900 4554000 3264700 1961700 1302900 6801300 3550200 3251100 0 0 0 0 0 0 0 0 0 0 0 0 5803 3776 6042 29573;29574 29740;29741 29741 2 EALDVLGAVLK MEKVAASPEDIKLCREALDVLGAVLKALTS KLCREALDVLGAVLKALTSADGASEEQSQN R E A L K A 2 0 0 1 0 0 1 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 11 0 1126.6598 G5EA06;Q92552;D6RH20 G5EA06 222 232 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.0014 59.245 By MS/MS By matching By matching By matching By MS/MS 1 1 2 1 3 1.2889 1.1896 24.579 8 Median 1.1189 1.0442 NaN 1 0 Median 1.3895 1.183 NaN 1 0 Median 0.95317 1.0196 30.104 2 0 Median NaN NaN NaN 0 0 Median 1.8393 1.818 NaN 1 0 Median 1.7805 1.4999 20.857 3 0 Plateau 60407000 24766000 35642000 4577700 2099900 2477800 49835000 20056000 29779000 3256200 1649000 1607200 0 0 0 254670 84852 169820 2483800 875990 1607800 5804 1131 6043 29575;29576;29577;29578;29579;29580;29581;29582 29742;29743 29743 2 EALEHKDREDYVPYTGEK TGPFDREHLLSYLEKEALEHKDREDYVPYT EHKDREDYVPYTGEKKGKIFIPKQKPVQTF K E A E K K 1 1 0 2 0 0 4 1 1 0 1 2 0 0 1 0 1 0 2 1 0 0 18 2 2178.0229 Q9NYL9 Q9NYL9 76 93 TMOD3 Tropomodulin-3 yes yes 3;4 0.021541 23.1 By MS/MS By MS/MS By MS/MS 1 2 1 0.37772 0.41153 55.399 4 Median 0.36294 0.38426 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.47919 0.53724 28.004 2 1 Median 0.17466 0.17472 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28228000 21069000 7159500 3250600 2291100 959500 0 0 0 13253000 8856600 4396200 11725000 9920900 1803800 0 0 0 0 0 0 5805 4178 6044 29583;29584;29585;29586 29744;29745;29746;29747 29745 4 EALEIEK AAKRFQELKAQRESKEALEIEKNSRKPPPY LKAQRESKEALEIEKNSRKPPPYKHIKANK K E A E K N 1 0 0 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 Q9BZ95 Q9BZ95 1059 1065 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes yes 2 0.053168 38.806 By MS/MS 1 1.0892 1.0213 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0892 1.0213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24487000 10735000 13752000 0 0 0 0 0 0 24487000 10735000 13752000 0 0 0 0 0 0 0 0 0 5806 3896 6045 29587 29748 29748 1 EALELTDTGLLSGSEER FGRLKDDREKCAKAKEALELTDTGLLSGSE LELTDTGLLSGSEERVQVALEELQDLKGVW K E A E R V 1 1 0 1 0 0 4 2 0 0 4 0 0 0 0 2 2 0 0 0 0 0 17 0 1818.8847 Q14204 Q14204 1302 1318 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 1.9403E-18 174.05 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0313 1.0189 9.7082 7 Median 0.99378 0.96682 5.8888 2 0 Median 1.2054 0.98556 13.832 2 0 Median 0.96104 1.0406 2.9824 2 0 Median NaN NaN NaN 0 0 Median 1.14 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median 71755000 34669000 37085000 41881000 20811000 21070000 15221000 6910500 8310500 13137000 6361200 6775700 0 0 0 1515400 586620 928790 0 0 0 5807 2865 6046 29588;29589;29590;29591;29592;29593;29594 29749;29750;29751;29752;29753;29754 29750 6 EALENANTNTEVLK LAQIDGTLSTIEFQREALENANTNTEVLKN REALENANTNTEVLKNMGYAAKAMKAAHDN R E A L K N 2 0 3 0 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 0 1544.7682 Q9H444 Q9H444 94 107 CHMP4B Charged multivesicular body protein 4b yes yes 2 5.6355E-08 162.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1684 1.0422 3.9544 5 Median 1.1684 1.0645 NaN 1 0 Median 1.2718 1.0683 NaN 1 0 Median 1.0826 1.0422 NaN 1 0 Median 1.2383 1.0349 NaN 1 0 Median 0.96811 0.9685 NaN 1 0 Median NaN NaN NaN 0 0 Median 74571000 34038000 40533000 17821000 7812700 10008000 13040000 5477400 7562600 14456000 6552800 7902700 20231000 9173500 11057000 9024000 5021700 4002300 0 0 0 5808 3961 6047 29595;29596;29597;29598;29599 29755;29756;29757;29758;29759;29760;29761;29762;29763 29759 9 EALENSHTNTEVLR LTQIDGTLSTIEFQREALENSHTNTEVLRN REALENSHTNTEVLRNMGFAAKAMKSVHEN R E A L R N 1 1 2 0 0 0 3 0 1 0 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1611.7853 Q96CF2 Q96CF2 94 107 CHMP4C Charged multivesicular body protein 4c yes yes 3 4.679E-05 78.763 By MS/MS 1 1.4263 1.1896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4263 1.1896 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3143900 1544900 1599100 0 0 0 0 0 0 0 0 0 3143900 1544900 1599100 0 0 0 0 0 0 5809 3618 6048 29600 29764 29764 1 EALEPSGENVIQNK YSDIRTGRESSLPSKEALEPSGENVIQNKE KEALEPSGENVIQNKESTG___________ K E A N K E 1 0 2 0 0 1 3 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 14 0 1526.7577 O75477 O75477 331 344 ERLIN1 Erlin-1 yes yes 2 0.05074 35.652 By MS/MS 1 0.82672 0.70451 NaN 1 Median NaN NaN NaN 0 0 Median 0.82672 0.70451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13401000 9767000 3633700 0 0 0 13401000 9767000 3633700 0 0 0 0 0 0 0 0 0 0 0 0 5810 1675 6049 29601 29765 29765 1 EALETDLYKR WNDVQGRFEKCVSAKEALETDLYKRFILVL CVSAKEALETDLYKRFILVLNEKKTKIRSL K E A K R F 1 1 0 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 1 1236.635 Q13426 Q13426 170 179 XRCC4 DNA repair protein XRCC4 yes yes 2 0.0018448 87.639 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5811 2815 6050 29602 29766 29766 1 EALEVDWSSEK ETTMVKKKVVFCPVKEALEVDWSSEKAKAA CPVKEALEVDWSSEKAKAALKRTTSDYFLL K E A E K A 1 0 0 1 0 0 3 0 0 0 1 1 0 0 0 2 0 1 0 1 0 0 11 0 1291.5932 Q9UBE0;M0QZS6;B3KNJ4;M0QX65 Q9UBE0 218 228 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 0.00021142 98.048 By matching By MS/MS 1 1 0.82991 0.74044 2.8686 2 Median 0.80901 0.75562 NaN 1 0 Median 0.85136 0.72558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19259000 9422200 9836300 7531100 3801100 3730100 11727000 5621200 6106200 0 0 0 0 0 0 0 0 0 0 0 0 5812 4237 6051 29603;29604 29767 29767 1 EALEYQR LRHFEELETIMDREREALEYQRQQLLADRQ ETIMDREREALEYQRQQLLADRQAFHMEQL R E A Q R Q 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 907.43995 Q8TAQ2;F8VXC8 Q8TAQ2 918 924 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.0065536 92.692 By MS/MS 1 0.88205 0.97027 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88205 0.97027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4092500 2097700 1994800 0 0 0 0 0 0 4092500 2097700 1994800 0 0 0 0 0 0 0 0 0 5813 3455 6052 29605 29768 29768 1 EALFNEFVAAAR AKDSRFKAIEKMKDREALFNEFVAAARKKE KDREALFNEFVAAARKKEKEDSKTRGEKIK R E A A R K 4 1 1 0 0 0 2 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 12 0 1336.6776 O14776;G3V220 O14776 770 781 TCERG1 Transcription elongation regulator 1 yes no 2 0.00013212 89.247 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 4 1 1.0984 1.0621 33.398 8 Median NaN NaN NaN 0 0 Median 1.7819 1.6923 NaN 1 0 Median 0.77454 0.89439 28.068 2 0 Median 1.261 1.0912 36.399 4 0 Median 0.98906 1.0338 NaN 1 0 Median NaN NaN NaN 0 0 Median 34458000 16215000 18244000 0 0 0 2223000 895620 1327400 26940000 13095000 13845000 3981000 1688500 2292600 1313900 535560 778330 0 0 0 5814 1494 6053 29606;29607;29608;29609;29610;29611;29612;29613;29614 29769;29770;29771;29772;29773;29774;29775;29776;29777;29778 29770 10 EALGDAQQSVR YGNRAATLMMLGRFREALGDAQQSVRLDDS GRFREALGDAQQSVRLDDSFVRGHLREGKC R E A V R L 2 1 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1172.5786 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7EK03;K7ER44;K7ELJ8;K7EJE9 Q99615 80 90 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.00017736 111.61 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.3505 1.2289 25.136 6 Median 1.4291 1.3825 18.809 2 1 Median 1.2555 1.0662 22.239 2 0 Median 1.6019 1.683 NaN 1 0 Median 1.0979 0.95398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15809000 7255900 8553400 3703100 1783800 1919300 9174600 4409700 4764800 2355200 806620 1548600 576430 255710 320710 0 0 0 0 0 0 5815 3759 6054 29615;29616;29617;29618;29619;29620 29779;29780;29781;29782;29783 29782 5 EALGGQALYPHVLVK TKNGKWMGIAFRIQKEALGGQALYPHVLVK EALGGQALYPHVLVKNCAVEFNFGQRAEPY K E A V K N 2 0 0 0 0 1 1 2 1 0 3 1 0 0 1 0 0 0 1 2 0 0 15 0 1593.8879 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0 Q9BUJ2 361 375 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2;3 0.0073231 33.225 By matching By matching By MS/MS By matching 1 1 3 2 1.1974 1.001 33.086 7 Median 0.68633 0.67525 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4108 1.5574 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66117 0.6823 32.483 3 0 Median 1.2358 1.0338 4.5635 2 0 Median 22334000 11995000 10338000 3785600 2125700 1659900 0 0 0 4549300 1717900 2831400 0 0 0 13305000 7847800 5457500 693660 303930 389740 5816 3840 6055 29621;29622;29623;29624;29625;29626;29627 29784;29785;29786 29786 3 EALGIPAAASFK LCDALNAWQLVKELKEALGIPAAASFKHVS ELKEALGIPAAASFKHVSPAGAAVGIPLSE K E A F K H 4 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 12 0 1173.6394 P31939 P31939 255 266 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 2 0.004819 68.893 By MS/MS 2 1.0797 1.0098 NaN 1 Median 1.0797 1.0098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18035000 8670700 9364100 18035000 8670700 9364100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5817 2207 6056 29628;29629 29787;29788 29788 2 EALHEALLEYEAGR DSVHIEDAEAVEQLREALHEALLEYEAGRA REALHEALLEYEAGRAGPGGGAERRRAGRL R E A G R A 3 1 0 0 0 0 4 1 1 0 3 0 0 0 0 0 0 0 1 0 0 0 14 0 1599.7893 P11474;H0YGT3 P11474 353 366 ESRRA Steroid hormone receptor ERR1 yes no 3 3.6786E-09 110.38 By MS/MS By matching 2 1 1.0364 1.0246 7.8775 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93286 0.96648 8.2598 2 0 Median 1.2166 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14256000 6737300 7519200 0 0 0 0 0 0 12439000 6000200 6438700 1817500 737080 1080400 0 0 0 0 0 0 5818 1966 6057 29630;29631;29632 29789;29790 29790 2 EALIAASETLK LSRHNTAVSQLTKAKEALIAASETLKERKA TKAKEALIAASETLKERKAAIRDIEGKLPQ K E A L K E 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1144.634 Q9NTJ3;E9PD53 Q9NTJ3 525 535 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00015771 111.61 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.95681 0.86691 12.101 5 Median 0.90852 0.87773 NaN 1 0 Median 0.97171 0.85724 1.5872 2 0 Median NaN NaN NaN 0 0 Median 1.0691 0.96191 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80522 0.6924 NaN 1 0 Median 34573000 18025000 16548000 12882000 6798000 6084000 13679000 7273200 6405700 0 0 0 7341800 3669900 3671800 0 0 0 670340 284180 386160 5819 4108 6058 29633;29634;29635;29636;29637 29791;29792;29793;29794 29792 4 EALIAASETLKER LSRHNTAVSQLTKAKEALIAASETLKERKA AKEALIAASETLKERKAAIRDIEGKLPQTE K E A E R K 3 1 0 0 0 0 3 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 13 1 1429.7777 Q9NTJ3;E9PD53 Q9NTJ3 525 537 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0027736 69.979 By MS/MS 1 0.76948 0.77406 NaN 1 Median 0.76948 0.77406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9072400 4007300 5065000 9072400 4007300 5065000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5820 4108 6059 29638 29795 29795 1 EALLELLR TLVQRYKADLATDQKEALLELLRLQPHPQL DLATDQKEALLELLRLQPHPQLSPEIRREL K E A L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 Q13895 Q13895 399 406 BYSL Bystin yes yes 2 0.016506 49.358 By matching By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1.228 1.1904 26.236 7 Median 1.1932 1.1904 NaN 1 0 Median 1.5034 1.2767 28.186 2 0 Median 1.2629 1.3249 54.156 2 0 Median NaN NaN NaN 0 0 Median 1.228 1.2349 NaN 1 0 Median 1.2187 1.0484 NaN 1 0 Median 34481000 14144000 20338000 2825400 1576900 1248500 13114000 5582500 7531600 12099000 4216000 7882500 0 0 0 1943000 908850 1034100 4500400 1859500 2640900 5821 2845 6060 29639;29640;29641;29642;29643;29644;29645 29796;29797;29798;29799 29797 4 EALLGDTGTGDFLK WDDSHLDSAGREGDREALLGDTGTGDFLKA REALLGDTGTGDFLKAPQSFRAELSSILLL R E A L K A 1 0 0 2 0 0 1 3 0 0 3 1 0 1 0 0 2 0 0 0 0 0 14 0 1435.7195 O00400;A0A2R8YEX5;A0A2R8Y359;H7C532;A0A2R8Y5I5;A0A2R8Y6H1;A0A2R8YF57 O00400 50 63 SLC33A1 Acetyl-coenzyme A transporter 1 yes no 2 0.00041385 70.977 By matching By MS/MS By matching 1 3 1 1.3505 1.2178 60.63 5 Median 4.3774 4.4205 NaN 1 0 Median 1.3505 1.1804 21.028 3 0 Median 1.1053 1.2178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4613300 1668100 2945100 814360 178340 636020 3106600 1215500 1891100 692330 274280 418050 0 0 0 0 0 0 0 0 0 5822 1459 6061 29646;29647;29648;29649;29650 29800 29800 1 EALLGVQEDVDEYVK ELHYPLGERRSDYDREALLGVQEDVDEYVK EALLGVQEDVDEYVKLGHEEQQKRLQAIIK R E A V K L 1 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 1 3 0 0 15 0 1705.841 Q14257;H0YL43 Q14257 42 56 RCN2 Reticulocalbin-2 yes no 2 9.1157E-08 145.55 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1557 1.1248 34.891 4 Median 0.82425 0.80744 NaN 1 0 Median 1.1356 0.96787 NaN 1 0 Median 1.1761 1.3072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1256 1.7874 NaN 1 0 Median 14570000 6311100 8258600 954200 474470 479730 10578000 4624000 5954000 2125100 936660 1188500 0 0 0 0 0 0 912450 276010 636440 5823 2869 6062 29651;29652;29653;29654 29801;29802;29803;29804 29803 4 EALLQASR AEKLAKERQEAEEAKEALLQASRDQKKTQE QEAEEAKEALLQASRDQKKTQEQLALEMAE K E A S R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 886.48723 P26038 P26038 401 408 MSN Moesin yes yes 2 0.0034817 93.561 By MS/MS By MS/MS 1 2 1.1681 1.077 9.1526 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.057 1.077 NaN 1 0 Median 1.2611 1.0705 12.934 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15278000 6861300 8417100 0 0 0 0 0 0 10804000 5029600 5774200 4474600 1831800 2642900 0 0 0 0 0 0 5824 2139 6063 29655;29656;29657 29805;29806;29807;29808;29809 29806 5 EALLSIGK DDHMHLIPTMTKKMKEALLSIGK_______ TMTKKMKEALLSIGK_______________ K E A G K - 1 0 0 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 829.49092 Q96C01;E7EQY1 Q96C01 131 138 FAM136A Protein FAM136A yes no 2 0.03278 38.419 By MS/MS 1 0.95866 0.90684 NaN 1 Median 0.95866 0.90684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3189500 1330500 1858900 3189500 1330500 1858900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5825 3612 6064 29658 29810 29810 1 EALLSSAVDHGSDEVK QTIIAGWREATKAAREALLSSAVDHGSDEV ALLSSAVDHGSDEVKFRQDLMNIAGTTLSS R E A V K F 2 0 0 2 0 0 2 1 1 0 2 1 0 0 0 3 0 0 0 2 0 0 16 0 1655.8002 P78371;F5GWF6;F8VQ14 P78371 139 154 CCT2 T-complex protein 1 subunit beta yes no 2;3 8.9484E-08 96.489 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 3 1.1014 0.94288 48.361 10 Median 1.1576 1.0674 7.8276 2 0 Median 1.1093 0.9378 31.552 3 0 Median 1.2817 1.2372 NaN 1 0 Median 1.1064 0.94799 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81025 0.6774 55.777 3 1 Median 325980000 148940000 177040000 114620000 50497000 64124000 129260000 56588000 72672000 38815000 16574000 22242000 22040000 10226000 11815000 0 0 0 21243000 15053000 6189300 5826 2644 6065 29659;29660;29661;29662;29663;29664;29665;29666;29667;29668 29811;29812;29813;29814;29815;29816;29817;29818;29819;29820;29821;29822;29823;29824 29814 14 EALLSSAVDHGSDEVKFR QTIIAGWREATKAAREALLSSAVDHGSDEV LSSAVDHGSDEVKFRQDLMNIAGTTLSSKL R E A F R Q 2 1 0 2 0 0 2 1 1 0 2 1 0 1 0 3 0 0 0 2 0 0 18 1 1958.9698 P78371;F5GWF6;F8VQ14 P78371 139 156 CCT2 T-complex protein 1 subunit beta yes no 3 8.3655E-15 113.01 By MS/MS 2 1.0969 1.0971 10.544 2 Median 1.0969 1.0971 10.544 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23244000 10891000 12353000 23244000 10891000 12353000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5827 2644 6066 29669;29670 29825;29826;29827;29828 29825 4 EALLVANGTPR VPWPVVVASPFRTAKEALLVANGTPRGGSA RTAKEALLVANGTPRGGSASVWSERLGQAL K E A P R G 2 1 1 0 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1139.6299 Q8IZ83;F5H4B6 Q8IZ83 414 424 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 2 0.023016 52.278 By MS/MS 1 0.75746 0.74707 NaN 1 Median 0.75746 0.74707 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2196400 1134900 1061500 2196400 1134900 1061500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5828 3348 6067 29671 29829 29829 1 EALNMLTWR LITYALSSVGSPKAKEALNMLTWRAEQEGG GSPKAKEALNMLTWRAEQEGGMQFWVSSES K E A W R A 1 1 1 0 0 0 1 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 9 0 1132.5699 Q6YHK3 Q6YHK3 1106 1114 CD109 CD109 antigen yes yes 2 0.0049967 58.981 By MS/MS 1 0.94567 0.99329 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94567 0.99329 NaN 1 0 Median NaN NaN NaN 0 0 Median 2919400 1615100 1304300 0 0 0 0 0 0 0 0 0 0 0 0 2919400 1615100 1304300 0 0 0 5829 3193 6068 29672 29830 29830 1 EALNSLSQLSYSTSSSK DKKINEMSKEVTKLKEALNSLSQLSYSTSS LNSLSQLSYSTSSSKRQSQQLEALQQQVKQ K E A S K R 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 7 1 0 1 0 0 0 17 0 1800.8741 Q9P0K7 Q9P0K7 896 912 RAI14 Ankycorbin yes yes 2 0.001731 36.847 By MS/MS 1 1.7083 1.463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7083 1.463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2927900 1181500 1746400 0 0 0 0 0 0 0 0 0 2927900 1181500 1746400 0 0 0 0 0 0 5830 4204 6069 29673 29831;29832 29832 2 EALNVINTHTK LHCKVVCLIQNGSFKEALNVINTHTKVLAN GSFKEALNVINTHTKVLANNSLSFEKAYCE K E A T K V 1 0 2 0 0 0 1 0 1 1 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1238.6619 O76094;D6RDY6;R4GNC1 O76094 63 73 SRP72 Signal recognition particle subunit SRP72 yes no 2;3 0.00018924 76.465 By MS/MS By MS/MS By MS/MS 1 2 2 0.92479 0.80405 39.984 5 Median 1.215 1.2078 NaN 1 0 Median 0.60334 0.53361 5.9161 2 2 Median NaN NaN NaN 0 0 Median 1.111 0.96598 25.949 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7542200 4266000 3276300 1657600 697830 959820 4209000 2829400 1379600 0 0 0 1675600 738700 936870 0 0 0 0 0 0 5831 1721 6070 29674;29675;29676;29677;29678 29833;29834;29835;29836;29837;29838;29839;29840 29837 8 EALPDGVNISK EDLNLPNAVITRIIKEALPDGVNISKEARS RIIKEALPDGVNISKEARSAISRAASVFVL K E A S K E 1 0 1 1 0 0 1 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1141.5979 Q9NRF9 Q9NRF9 21 31 POLE3 DNA polymerase epsilon subunit 3 yes yes 2 0.00014747 83.783 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.81043 0.70566 12.942 5 Median 0.81073 0.76308 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81043 0.76754 NaN 1 0 Median 0.7744 0.63547 14.816 2 0 Median NaN NaN NaN 0 0 Median 0.77925 0.622 NaN 1 0 Median 82857000 43963000 38894000 26512000 14146000 12366000 0 0 0 44931000 23698000 21233000 11063000 5909200 5153900 0 0 0 350240 209060 141180 5832 4081 6071 29679;29680;29681;29682;29683 29841;29842;29843;29844;29845;29846;29847 29842 7 EALQDVEDENQ LWTSDMQGDGEEQNKEALQDVEDENQ____ EQNKEALQDVEDENQ_______________ K E A N Q - 1 0 1 2 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1288.5419 P62258;I3L0W5 P62258 245 255 YWHAE 14-3-3 protein epsilon yes no 2 0.0059494 65.246 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33533000 0 0 16523000 0 0 17010000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5833 2576 6072 29684;29685;29686 29848;29849;29850 29850 3 EALQLMATYLPK TATASLGVIHKGHEKEALQLMATYLPKDTS HEKEALQLMATYLPKDTSPGSAYQEGGGLY K E A P K D 2 0 0 0 0 1 1 0 0 0 3 1 1 0 1 0 1 0 1 0 0 0 12 0 1376.7374 A0A087WW66;Q99460 A0A087WW66 418 429 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.037251 46.001 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5834 54 6073 29687 29851 29851 1 EALQNVHEEVALR NGCVTTARPVPKHIREALQNVHEEVALRYY IREALQNVHEEVALRYYGCGLVIPEHLENC R E A L R Y 2 1 1 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1506.7791 A0A087WVD4;Q9HBK9 A0A087WVD4 45 57 AS3MT Arsenite methyltransferase yes no 3 0.00031884 58.098 By MS/MS By MS/MS By MS/MS 1 1 1 0.87163 0.86967 26.39 3 Median 0.87163 0.86967 NaN 1 0 Median 0.8614 0.74542 NaN 1 0 Median 1.1504 1.2466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22573000 10551000 12022000 14338000 6997400 7340700 3554500 1724800 1829700 4680400 1828400 2852000 0 0 0 0 0 0 0 0 0 5835 41 6074 29688;29689;29690 29852;29853;29854;29855 29852 4 EALQYFYFLR LLMLYTRKFESTDPREALQYFYFLRDEKDS STDPREALQYFYFLRDEKDSQGENMFLRCV R E A L R D 1 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 0 0 2 0 0 0 10 0 1348.6816 Q8N1F7;H3BVG0 Q8N1F7 546 555 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00041811 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 5 2 1 1.0619 1.0741 5.0696 10 Median 1.1431 1.1331 NaN 1 0 Median 1.2494 1.0831 NaN 1 0 Median 1.056 1.0653 4.6273 5 0 Median NaN NaN NaN 0 0 Median 0.99132 1.0271 4.4187 2 0 Median 1.3733 1.1621 NaN 1 0 Median 22147000 10575000 11572000 1566600 748950 817610 2724500 1213500 1511100 16329000 7789800 8539200 0 0 0 1359300 750860 608430 168070 72213 95857 5836 3356 6075 29691;29692;29693;29694;29695;29696;29697;29698;29699;29700 29856;29857;29858;29859;29860;29861;29862;29863;29864;29865;29866 29860 11 EALSQLR QRFRHLRYQETPGPREALSQLRVLCCEWLR YQETPGPREALSQLRVLCCEWLRPEKHTKE R E A L R V 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 815.45012 I3L4J6;Q9UNY5;C9JHD9;F8WBD4;G3V1M0;G3V0F4;A0A140T9Y6;Q9Y5A6;Q9Y2L8;Q6R2W3 I3L4J6 95 101 ZNF232;ZSCAN21;ZKSCAN5;ZBED9 Zinc finger protein 232;Zinc finger and SCAN domain-containing protein 21;Zinc finger protein with KRAB and SCAN domains 5;SCAN domain-containing protein 3 yes no 2 0.056278 50.12 By MS/MS 1 0.13722 0.11308 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.13722 0.11308 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 663650 624760 38886 0 0 0 0 0 0 0 0 0 663650 624760 38886 0 0 0 0 0 0 5837 1292 6076 29701 29867 29867 1 EALSTATVQAAER FMSLLNFLNNFQTAKEALSTATVQAAERAA AKEALSTATVQAAERAASSMKDLAQKSFRL K E A E R A 4 1 0 0 0 1 2 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 13 0 1345.6838 Q709C8;A0A3B3IT88 Q709C8 1727 1739 VPS13C Vacuolar protein sorting-associated protein 13C yes no 2 1.9671E-30 172.56 By MS/MS By MS/MS By matching 1 1 1 1.0946 1.1487 34.041 3 Median 0.69534 0.69496 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1931 1.33 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0946 1.1487 NaN 1 0 Median NaN NaN NaN 0 0 Median 10025000 5299600 4725200 5612700 3001800 2610900 0 0 0 1997900 980530 1017400 0 0 0 2414200 1317300 1096900 0 0 0 5838 3205 6077 29702;29703;29704 29868;29869 29868 2 EALTYDGALLGDR KGFCYVEFDEVDSLKEALTYDGALLGDRSL LKEALTYDGALLGDRSLRVDIAEGRKQDKG K E A D R S 2 1 0 2 0 0 1 2 0 0 3 0 0 0 0 0 1 0 1 0 0 0 13 0 1392.6885 Q15056 Q15056 97 109 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 4.1354E-15 182.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1 1.1324 0.99325 30.238 6 Median 1.0878 1.0342 NaN 1 0 Median 1.1278 0.95388 NaN 1 0 Median 1.3134 1.2949 20.73 2 0 Median 1.137 0.94228 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72616 0.59201 NaN 1 0 Median 109400000 49665000 59739000 40421000 18178000 22243000 10369000 4525200 5843500 55226000 25336000 29890000 2950500 1367500 1583000 0 0 0 438330 259060 179270 5839 2922 6078 29705;29706;29707;29708;29709;29710;29711 29870;29871;29872;29873;29874;29875;29876;29877;29878 29873 9 EALVDTLTGILSPVQEVR GAASGLPGPVAQGLKEALVDTLTGILSPVQ VDTLTGILSPVQEVRAAAEEQIKVLEVTEE K E A V R A 1 1 0 1 0 1 2 1 0 1 3 0 0 0 1 1 2 0 0 3 0 0 18 0 1939.0626 Q96P70 Q96P70 23 40 IPO9 Importin-9 yes yes 2 0.0016948 35.204 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0293 0.98194 60.118 5 Median 0.97404 0.93609 6.7636 2 0 Median 1.1781 1.0395 NaN 1 0 Median 0.75447 0.77384 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.2174 3.4329 NaN 1 0 Median NaN NaN NaN 0 0 Median 5704800 2457900 3246900 3923100 1890800 2032300 493670 214670 279000 158010 91864 66141 0 0 0 1130000 260570 869420 0 0 0 5840 3711 6079 29712;29713;29714;29715;29716 29879;29880 29879 2 EAMAQKEDMEER IKSEEMNTKLQRDVREAMAQKEDMEERITT DVREAMAQKEDMEERITTLEKRYLAAQREA R E A E R I 2 1 0 1 0 1 4 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 12 1 1465.6177 A0A2R8Y7R9;Q13136;H0YEF9;E9PJZ7;H0YH95;H0YHK3;G3V200;O75334 A0A2R8Y7R9 292 303 PPFIA1;PPFIA2 Liprin-alpha-1;Liprin-alpha-2 yes no 3 0.0094051 28.632 By MS/MS 1 1.1024 1.0516 NaN 1 Median NaN NaN NaN 0 0 Median 1.1024 1.0516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1195000 345700 849320 0 0 0 1195000 345700 849320 0 0 0 0 0 0 0 0 0 0 0 0 5841 382 6080 29717 29881 29881 1 EAMCLSAPALALK VSLSVQSPAALTAEKEAMCLSAPALALKLP EKEAMCLSAPALALKLPIPSPQRAFTLQVS K E A L K L 4 0 0 0 1 0 1 0 0 0 3 1 1 0 1 1 0 0 0 0 0 0 13 0 1373.7047 P54198 P54198 670 682 HIRA Protein HIRA yes yes 3 0.047937 14.687 By MS/MS By matching 1 2 1.1235 0.92497 21.754 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.217 1.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95351 0.79348 21.684 2 0 Median 8417600 3798200 4619400 0 0 0 0 0 0 0 0 0 2993000 1555500 1437500 0 0 0 5424600 2242600 3181900 5842 2481 6081 29718;29719;29720 29882 29882 1 EAMEADLK KVQKKDPKEWAAQYREAMEADLKAAAEAAA EWAAQYREAMEADLKAAAEAAAEAKARAEI R E A L K A 2 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 0 905.41643 Q9UNF1;Q5H909;Q5H907 Q9UNF1 477 484 MAGED2 Melanoma-associated antigen D2 yes no 2 0.0039199 84.568 By matching By MS/MS 1 1 1.0767 0.97896 19.327 2 Median 0.87421 0.85392 NaN 1 0 Median 1.326 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8341000 3868500 4472500 2651600 1393600 1258000 5689500 2474900 3214500 0 0 0 0 0 0 0 0 0 0 0 0 5843 4343 6082 29721;29722 29883;29884 29883 2 EAMEDGEIDGNK GFVDFNSEEDAKAAKEAMEDGEIDGNKVTL AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG K E A N K V 1 0 1 2 0 0 3 2 0 1 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1306.5347 P19338;H7BY16 P19338 628 639 NCL Nucleolin yes no 2 4.5512E-06 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 6 6 1 1.136 1.0144 15.137 21 Median 0.96455 0.94294 0.030934 2 0 Median 1.091 0.91913 11.931 6 0 Median 1.1029 1.1723 18.034 6 0 Median 1.237 1.0609 9.3603 6 0 Median 1.0668 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median 104780000 48804000 55979000 10932000 5460800 5471500 31569000 14668000 16901000 24147000 11078000 13069000 34686000 16075000 18611000 3449200 1522100 1927200 0 0 0 5844 2063 6083;6084 29723;29724;29725;29726;29727;29728;29729;29730;29731;29732;29733;29734;29735;29736;29737;29738;29739;29740;29741;29742;29743 29885;29886;29887;29888;29889;29890;29891;29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903;29904;29905;29906;29907;29908;29909;29910;29911;29912 29895 831 28 EAMEDGEIDGNKVTLDWAKPK GFVDFNSEEDAKAAKEAMEDGEIDGNKVTL EIDGNKVTLDWAKPKGEGGFGGRGGGRGGF K E A P K G 2 0 1 3 0 0 3 2 0 1 1 3 1 0 1 0 1 1 0 1 0 0 21 2 2345.1209 P19338;H7BY16 P19338 628 648 NCL Nucleolin yes no 3;4 4.0631E-09 57.989 By MS/MS By matching By MS/MS By MS/MS 3 1 3 2 0.88839 0.97975 27.438 9 Median 0.76261 0.79941 14.252 3 1 Median 0.65513 0.6392 NaN 1 0 Median 1.0651 1.2965 16.234 3 0 Median NaN NaN NaN 0 0 Median 1.0295 1.1477 7.0328 2 0 Median NaN NaN NaN 0 0 Median 99483000 49814000 49669000 30344000 15299000 15045000 1420700 738890 681840 49536000 24953000 24583000 0 0 0 18183000 8823600 9359000 0 0 0 5845 2063 6085 29744;29745;29746;29747;29748;29749;29750;29751;29752 29913;29914;29915;29916;29917;29918;29919 29916 7 EAMEHPYFYTVVK DKLLRYDHQSRLTAREAMEHPYFYTVVKDQ AREAMEHPYFYTVVKDQARMGSSSMPGGST R E A V K D 1 0 0 0 0 0 2 0 1 0 0 1 1 1 1 0 1 0 2 2 0 0 13 0 1612.7596 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A087WY74 P68400 317 329 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 6.3693E-07 132.88 By MS/MS By matching By MS/MS By matching 2 3 4 1 1.0347 0.93894 27.529 10 Median 1.0086 0.93894 6.5221 2 0 Median 1.0144 0.86564 8.1468 3 0 Median 1.2332 1.2575 27.761 4 0 Median 1.0583 0.89225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107150000 50106000 57047000 17666000 8792200 8873800 15750000 7903000 7846600 72723000 32957000 39767000 1014100 454030 560090 0 0 0 0 0 0 5846 394 6086;6087 29753;29754;29755;29756;29757;29758;29759;29760;29761;29762 29920;29921;29922;29923;29924;29925;29926 29926 184 7 EAMGIYISTLK NLVALMKEEGVKLLREAMGIYISTLKTEFT KLLREAMGIYISTLKTEFTQGMILPTMNGE R E A L K T 1 0 0 0 0 0 1 1 0 2 1 1 1 0 0 1 1 0 1 0 0 0 11 0 1224.6424 O95433;G3V438;H0YJG7;H0YJU2 O95433 146 156 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.033112 30.392 By MS/MS By matching 1 1 1.292 1.1173 0.078727 2 Median 1.2101 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3793 1.1179 NaN 1 0 Median 21519000 9922200 11597000 21431000 9881300 11550000 0 0 0 0 0 0 0 0 0 0 0 0 88372 40843 47529 5847 1773 6088 29763;29764 29927 29927 1 EAMNDPLLER AKTILKYMTDGMLLREAMNDPLLERYGVII GMLLREAMNDPLLERYGVIILDEAHERTLA R E A E R Y 1 1 1 1 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 10 0 1186.5652 O43143 O43143 244 253 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00033784 110.87 By MS/MS By MS/MS By MS/MS By matching 1 1 5 1 0.78592 0.77103 8.8819 6 Median 0.79371 0.75072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77537 0.79821 7.5917 4 1 Median 0.78676 0.68356 NaN 1 0 Median 56066000 31481000 24584000 19546000 10403000 9143300 0 0 0 0 0 0 0 0 0 35881000 20809000 15073000 638570 270040 368530 5848 1553 6089 29765;29766;29767;29768;29769;29770;29771;29772 29928;29929;29930;29931;29932;29933;29934;29935 29935 8 EAMVMANNVYK YEGLIECYLASNSIREAMVMANNVYKTLGA NSIREAMVMANNVYKTLGANAQTLTLLATV R E A Y K T 2 0 2 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 1 2 0 0 11 0 1268.5893 Q9UJX3 Q9UJX3 425 435 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.00048115 92.439 By MS/MS By MS/MS 1 1 0.77107 0.70514 22.454 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84316 0.82648 NaN 1 1 Median 0.70515 0.60162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10934000 5941700 4992800 0 0 0 0 0 0 8960200 4819900 4140400 1974300 1121800 852490 0 0 0 0 0 0 5849 4301 6090 29773;29774 29936;29937 29936 1 EAMVQAEEAAAEITR YETGEIPRKNLDVMKEAMVQAEEAAAEITR EAMVQAEEAAAEITRKLEKQEKKRLKKEKK K E A T R K 5 1 0 0 0 1 4 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 15 0 1617.7668 O00567;A0A494C128;H0YDU4;H0Y653 O00567 423 437 NOP56 Nucleolar protein 56 yes no 2;3 1.0767E-13 172.92 By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 7 6 0.94918 0.95096 15.634 19 Median NaN NaN NaN 0 0 Median 1.3476 1.1652 32.531 3 0 Median 0.88083 0.89998 NaN 1 1 Median 1.1413 0.9659 22.109 2 0 Median 0.93508 0.94535 7.5558 7 0 Median 1.135 0.95479 13.189 6 0 Median 66606000 33325000 33282000 0 0 0 2648600 1130200 1518300 8440200 4113800 4326300 1732900 831700 901180 51030000 25938000 25092000 2754300 1310600 1443700 5850 1472 6091;6092 29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786;29787;29788;29789;29790;29791;29792;29793 29938;29939;29940;29941;29942;29943;29944;29945;29946;29947 29945 471 10 EANALAAGHPAQAVAINAR RDLEAIAARVGELTREANALAAGHPAQAVA LAAGHPAQAVAINARLREVQTGWEDLRATM R E A A R L 8 1 2 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 19 0 1843.9653 O15020 O15020 1021 1039 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 1.1891E-08 82.007 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1 1.0131 0.91787 19.417 8 Median 0.99922 0.93793 NaN 1 0 Median 1.0932 0.90434 13.522 2 0 Median 0.66842 0.73402 16.47 2 0 Median 1.1416 1.0063 NaN 1 0 Median 0.87167 0.89825 NaN 1 0 Median 1.5361 1.2771 NaN 1 0 Median 112980000 58627000 54353000 10906000 5237300 5668800 26378000 12712000 13665000 56455000 31726000 24729000 7533800 3457500 4076300 8967700 4324600 4643100 2739100 1168900 1570200 5851 1512 6093 29794;29795;29796;29797;29798;29799;29800;29801 29948;29949;29950;29951;29952;29953;29954;29955;29956;29957;29958;29959;29960;29961 29959 14 EANEILQR KREDLVVAPAGITLKEANEILQRSKKGKLP PAGITLKEANEILQRSKKGKLPIVNEDDEL K E A Q R S 1 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 P12268;H0Y4R1;E7ETK5;A0A3B3IRL5;C9J381;P20839;C9K0R9 P12268 196 203 IMPDH2;IMPDH1 Inosine-5-monophosphate dehydrogenase 2;Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 no no 2 0.0053943 76.035 By MS/MS By MS/MS 1 2 1.1544 0.99451 10.864 3 Plateau 1.1026 1.0563 NaN 1 0 Median 1.0863 0.92234 10.654 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25568000 11878000 13691000 10236000 4781500 5454500 15332000 7096300 8236100 0 0 0 0 0 0 0 0 0 0 0 0 5852 1148;413 6094 29802;29803;29804 29962;29963;29964 29963 3 EANELQQWINEK KGMLEKSCKKFMLFREANELQQWINEKEAA LFREANELQQWINEKEAALTSEEVGADLEQ R E A E K E 1 0 2 0 0 2 3 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 12 0 1500.7209 A0A0D9SF54;Q13813 Q13813 1099 1110 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 3.958E-06 151.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 1 2 1.0114 0.89976 15.717 11 Median 0.88399 0.87005 42.4 2 1 Median 1.0196 0.89442 0.8413 2 0 Median 0.89833 0.98523 NaN 1 0 Median 1.0084 0.91081 2.9945 3 0 Median 1.0409 1.0901 NaN 1 0 Median 0.97857 0.83061 7.0563 2 0 Median 136710000 69302000 67412000 30264000 15829000 14435000 9324500 4689300 4635200 73279000 37007000 36271000 5984900 2900400 3084500 16910000 8434600 8475400 950940 440400 510540 5853 264;2838 6095 29805;29806;29807;29808;29809;29810;29811;29812;29813;29814;29815 29965;29966;29967;29968;29969;29970;29971;29972;29973 29969 9 EANFTVSSMHGDMPQK CNTKRKVDWLTEKMREANFTVSSMHGDMPQ ANFTVSSMHGDMPQKERESIMKEFRSGASR R E A Q K E 1 0 1 1 0 1 1 1 1 0 0 1 2 1 1 2 1 0 0 1 0 0 16 0 1777.7764 P38919;I3L3H2 P38919 299 314 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 1.6982E-14 177.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 3 4 2 0.99641 0.93952 12.452 19 Median 0.95516 0.89908 11.973 2 1 Median 1.1148 0.95269 19.139 3 0 Median 0.97787 0.98035 12.319 5 0 Median 1.06 0.95746 5.8687 3 0 Median 0.89585 0.87382 5.9803 4 0 Median 0.97794 0.82018 6.5649 2 0 Median 223000000 106140000 116860000 16026000 7311300 8714400 9032700 3883600 5149100 88905000 42307000 46598000 75732000 36158000 39575000 30860000 15226000 15634000 2446500 1258900 1187500 5854 2278 6096;6097 29816;29817;29818;29819;29820;29821;29822;29823;29824;29825;29826;29827;29828;29829;29830;29831;29832;29833;29834 29974;29975;29976;29977;29978;29979;29980;29981;29982;29983;29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995 29992 1032 22 EANGEPIGAPGTSNHLLLAGPR PREEPCALGAQSVKREANGEPIGAPGTSNH GAPGTSNHLLLAGPRSEAGHLLLQKLLRAK R E A P R S 3 1 2 0 0 0 2 4 1 1 3 0 0 0 3 1 1 0 0 0 0 0 22 0 2170.1131 O14686 O14686 4434 4455 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 1.8283E-05 55.127 By MS/MS 2 0.58049 0.61066 2.2921 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58049 0.61066 2.2921 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32456000 20021000 12436000 0 0 0 0 0 0 32456000 20021000 12436000 0 0 0 0 0 0 0 0 0 5855 1490 6098 29835;29836 29996;29997 29997 2 EANHNVSAPYGR LSRYLTLDGFDAMFREANHNVSAPYGRITL MFREANHNVSAPYGRITLHVFWELNYDFLP R E A G R I 2 1 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1313.6113 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 827 838 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 3 0.036553 18.858 By MS/MS By matching By matching 1 1 1 0.85959 0.83262 7.7442 3 Median NaN NaN NaN 0 0 Median 0.85959 0.7508 NaN 1 0 Median 0.82011 0.87367 NaN 1 0 Median 0.96506 0.83262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1975100 1056300 918760 0 0 0 1149700 650100 499610 356740 173190 183550 468620 233030 235590 0 0 0 0 0 0 5856 3224;897 6099 29837;29838;29839 29998 29998 1 EANIQAVDSEVGLTK ILQTVDLVSQETGEKEANIQAVDSEVGLTK EANIQAVDSEVGLTKEDTQEKLGEDDKTQK K E A T K E 2 0 1 1 0 1 2 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1572.7995 Q9H2G2 Q9H2G2 510 524 SLK STE20-like serine/threonine-protein kinase yes yes 2 3.049E-09 99.522 By MS/MS By MS/MS By matching 1 1 1 0.94819 0.91053 19.635 3 Median 0.94819 0.91053 NaN 1 0 Median 1.0851 0.96176 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77872 0.66823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57887000 31409000 26478000 5107400 2692100 2415200 8000700 3752400 4248200 0 0 0 44779000 24964000 19815000 0 0 0 0 0 0 5857 3942 6100 29840;29841;29842 29999;30000;30001;30002 30002 4 EANIQAVDSEVGLTKEDTQEK ILQTVDLVSQETGEKEANIQAVDSEVGLTK VDSEVGLTKEDTQEKLGEDDKTQKDVISNT K E A E K L 2 0 1 2 0 2 4 1 0 1 1 2 0 0 0 1 2 0 0 2 0 0 21 1 2303.1129 Q9H2G2 Q9H2G2 510 530 SLK STE20-like serine/threonine-protein kinase yes yes 3 7.6887E-12 67.866 By MS/MS 1 1.0394 1.0065 NaN 1 Median 1.0394 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9886500 5004000 4882500 9886500 5004000 4882500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5858 3942 6101 29843 30003 30003 1 EANLAASFGK ARVCHAHPTLSEAFREANLAASFGKSINF_ SEAFREANLAASFGKSINF___________ R E A G K S 3 0 1 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1006.5084 E9PEX6;P09622 E9PEX6 473 482 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.00035174 103.55 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.4359 1.2168 28.986 7 Median 0.94518 0.85683 9.2294 2 0 Median 1.5395 1.2999 9.3372 2 0 Median 1.506 1.5163 35.584 2 0 Median 1.5547 1.3367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44536000 19406000 25130000 23363000 11267000 12096000 12447000 4818200 7628900 6886500 2592200 4294300 1839400 728580 1110900 0 0 0 0 0 0 5859 915 6102 29844;29845;29846;29847;29848;29849;29850 30004;30005;30006;30007;30008;30009;30010;30011 30008 8 EANLLNAVIVQR TFPNKELADESQTLKEANLLNAVIVQRLT_ TLKEANLLNAVIVQRLT_____________ K E A Q R L 2 1 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1338.7619 Q9UNZ2 Q9UNZ2 357 368 NSFL1C NSFL1 cofactor p47 yes yes 2 4.8278E-15 145.17 By MS/MS By MS/MS By MS/MS 3 4 1 1.2603 1.1629 29.26 8 Median 1.3137 1.2443 8.2193 3 2 Plateau 1.3188 1.1276 39.946 4 0 Median 1.3132 1.3181 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48182000 22003000 26179000 31950000 15098000 16853000 12460000 5177700 7282200 3772000 1727600 2044400 0 0 0 0 0 0 0 0 0 5860 4353 6103 29851;29852;29853;29854;29855;29856;29857;29858 30012;30013;30014;30015;30016;30017;30018;30019 30014 8 EANLQALIATGGDINAAIER QQQLEQLSAMGFLNREANLQALIATGGDIN ALIATGGDINAAIERLLGSQPS________ R E A E R L 5 1 2 1 0 1 2 2 0 3 2 0 0 0 0 0 1 0 0 0 0 0 20 0 2039.0647 Q9NRR5;Q9UHD9;Q9UMX0 Q9UMX0 563 582 UBQLN4;UBQLN2;UBQLN1 Ubiquilin-4;Ubiquilin-2;Ubiquilin-1 no no 2 0.046836 19.323 By MS/MS By MS/MS 1 1 1.0283 0.96327 39.164 2 Median 1.2525 1.2706 NaN 1 0 Median 0.84431 0.73026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2273200 1028100 1245100 1150300 486180 664080 1122900 541880 581020 0 0 0 0 0 0 0 0 0 0 0 0 5861 4335;4277;4087 6104 29859;29860 30020;30021 30021 2 EANMPLPGYK SNGFICDYELHELFKEANMPLPGYKVREII HELFKEANMPLPGYKVREIIQKLMLDGDRN K E A Y K V 1 0 1 0 0 0 1 1 0 0 1 1 1 0 2 0 0 0 1 0 0 0 10 0 1118.543 P13797;A0A0A0MSQ0;U3KQI3 P13797 43 52 PLS3 Plastin-3 yes no 2 0.00034745 84.498 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 0.88659 0.78129 21.045 5 Median 0.78036 0.73447 8.7395 2 1 Median 0.88659 0.73811 NaN 1 0 Median 1.0599 1.075 NaN 1 1 Median 1.2508 1.0676 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124660000 64809000 59848000 76398000 41132000 35266000 35341000 17923000 17418000 11137000 5168400 5968200 1781600 585740 1195900 0 0 0 0 0 0 5862 1995 6105;6106 29861;29862;29863;29864;29865;29866 30022;30023;30024;30025;30026;30027;30028;30029;30030;30031 30029 785 10 EANNFLWPFK EDLIHEIYTVGKRFKEANNFLWPFKLSSPR GKRFKEANNFLWPFKLSSPRGGMKKKTTHF K E A F K L 1 0 2 0 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 10 0 1264.6241 P18124;A8MUD9 P18124 203 212 RPL7 60S ribosomal protein L7 yes no 2 0.031122 33.797 By matching By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 1 2 1.1728 1.0238 13.438 10 Median 1.1563 1.1487 NaN 1 0 Median 1.1856 1.0423 32.788 2 0 Median 1.1719 1.1222 14.307 2 0 Median 1.1897 0.98936 2.2013 2 0 Median 1.0131 1.0334 NaN 1 0 Median 1.2021 1.0022 7.3393 2 0 Median 31467000 14183000 17284000 749770 285680 464090 395770 198080 197690 7918100 3392500 4525600 2244100 989810 1254300 15562000 7346300 8216200 4596700 1970200 2626500 5863 2056 6107 29867;29868;29869;29870;29871;29872;29873;29874;29875;29876 30032;30033 30032 2 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK AAAAAPEAGASPVEKEAPAEGEAAEPGSPT EGEAASAASSTSSPKAEDGATPSPSNETPK K E A P K A 10 0 0 0 0 0 6 3 0 0 0 1 0 0 4 6 2 0 0 0 0 0 32 0 2914.2952 P29966 P29966 106 137 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 3 1.9288E-20 73.317 By MS/MS By MS/MS 2 1 0.51027 0.45642 29.43 2 Median 0.39648 0.37067 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6567 0.56201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44009000 27964000 16045000 42627000 27129000 15498000 0 0 0 0 0 0 1381600 835130 546420 0 0 0 0 0 0 5864 2175 6108 29877;29878;29879 30034;30035;30036 30034 3 EAPAGPLEEDDLEPLTLAPAPAPRPPQDLIGLR MTILEASGKQEPEAKEAPAGPLEEDDLEPL PAPAPRPPQDLIGLRLAQEKALKRQLEEEQ K E A L R L 5 2 0 3 0 1 4 2 0 1 6 0 0 0 8 0 1 0 0 0 0 0 33 1 3457.8093 Q92797 Q92797 1110 1142 SYMPK Symplekin yes yes 3 1.0007E-05 34.839 By MS/MS 1 0.21082 0.25641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21082 0.25641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12421000 9745000 2675800 0 0 0 0 0 0 12421000 9745000 2675800 0 0 0 0 0 0 0 0 0 5865 3558 6109 29880 30037;30038 30038 2 EAPAPVAHPAPGGPEEQWQR DARKKVPAAPITVSKEAPAPVAHPAPGGPE VAHPAPGGPEEQWQRAIHERGEAVCPTCNV K E A Q R A 4 1 0 0 0 2 3 2 1 0 0 0 0 0 5 0 0 1 0 1 0 0 20 0 2123.0185 Q96KM6 Q96KM6 483 502 ZNF512B Zinc finger protein 512B yes yes 3 2.3235E-06 49.089 By MS/MS By MS/MS 3 3 0.41082 0.39725 53.065 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34637 0.36701 28.269 3 2 Median 0.73156 0.61059 50.488 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48778000 38169000 10608000 0 0 0 0 0 0 41925000 34209000 7715600 6852800 3960200 2892600 0 0 0 0 0 0 5866 3694 6110 29881;29882;29883;29884;29885;29886 30039;30040;30041;30042;30043 30041 5 EAPASVVPFVR SPVRVKREFEPASAREAPASVVPFVRVKRE ASAREAPASVVPFVRVKREREVDEDSEPER R E A V R V 2 1 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 11 0 1170.6397 B9A018;Q53GS9;F8WC91 B9A018 61 71 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0001789 93.267 By MS/MS By MS/MS By MS/MS 1 2 1 0.76504 0.71237 7.6544 4 Median 0.73161 0.70369 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73805 0.74863 12.171 2 0 Median 0.86142 0.72116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47422000 27638000 19785000 6892400 3495000 3397400 0 0 0 36576000 22147000 14429000 3953500 1995400 1958100 0 0 0 0 0 0 5867 654 6111 29887;29888;29889;29890 30044;30045;30046;30047;30048;30049;30050;30051 30046 8 EAPATQASSTTQLTDTQVLAAENK GVSKATEVSKTPEAREAPATQASSTTQLTD TTQLTDTQVLAAENKSLAADTKKQNADPQA R E A N K S 5 0 1 1 0 3 2 0 0 0 2 1 0 0 1 2 5 0 0 1 0 0 24 0 2474.2136 Q9UNF1;Q5H909 Q9UNF1 77 100 MAGED2 Melanoma-associated antigen D2 yes no 3 2.9067E-16 65.901 By MS/MS By matching 2 1 1.1593 1.1637 26.694 3 Plateau 0.93233 0.85994 28.549 2 0 Median NaN NaN NaN 0 0 Median 1.1593 1.1637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43106000 16741000 26365000 25887000 12034000 13853000 0 0 0 17220000 4707600 12512000 0 0 0 0 0 0 0 0 0 5868 4343 6112 29891;29892;29893 30052;30053 30053 2 EAPEPGMEVVK FSGGIGSMEADHISKEAPEPGMEVVKVGGP HISKEAPEPGMEVVKVGGPVYRIGVGGGAA K E A V K V 1 0 0 0 0 0 3 1 0 0 0 1 1 0 2 0 0 0 0 2 0 0 11 0 1184.5747 O15067 O15067 441 451 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.003854 49.06 By MS/MS 1 0.67599 0.56965 NaN 1 Median NaN NaN NaN 0 0 Median 0.67599 0.56965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22648000 14222000 8425300 0 0 0 22648000 14222000 8425300 0 0 0 0 0 0 0 0 0 0 0 0 5869 1518 6113 29894 30054;30055 30054 2 EAPEPMELDGPK IDKDHAFGKYYSRPKEAPEPMELDGPKGTG RPKEAPEPMELDGPKGTGYIKTELISVSEV K E A P K G 1 0 0 1 0 0 3 1 0 0 1 1 1 0 3 0 0 0 0 0 0 0 12 0 1311.6017 P42224;J3KPM9;H7BZB5 P42224 686 697 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.0023826 76.143 By MS/MS By MS/MS 1 1 0.72829 0.65011 7.3019 2 Median 0.67972 0.6174 NaN 1 1 Median 0.78032 0.68456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14733000 8810600 5921900 11147000 6886200 4260800 3585500 1924400 1661100 0 0 0 0 0 0 0 0 0 0 0 0 5870 2308 6114 29895;29896 30056;30057 30056 2 EAPNPIHLTVDTSLQNGR DITEHSVLIHEYYSREAPNPIHLTVDTSLQ NPIHLTVDTSLQNGRMSIKAYVSTLMGVPG R E A G R M 1 1 2 1 0 1 1 1 1 1 2 0 0 0 2 1 2 0 0 1 0 0 18 0 1960.9967 O00303 O00303 193 210 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2;3 1.3567E-06 63.918 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.94659 0.95591 34.72 5 Median 1.0703 1.055 13.946 2 0 Median 1.4378 1.2824 NaN 1 0 Median 0.83247 0.8209 NaN 1 0 Median 0.61577 0.53073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53821000 27469000 26352000 32554000 15317000 17237000 323230 98470 224760 11838000 6262400 5575500 9106000 5791200 3314800 0 0 0 0 0 0 5871 1457 6115 29897;29898;29899;29900;29901 30058;30059;30060;30061 30060 4 EAPPMEKPEVVK RKQHSLLKRLRKAKKEAPPMEKPEVVKTHL AKKEAPPMEKPEVVKTHLRDMIILPEMVGS K E A V K T 1 0 0 0 0 0 3 0 0 0 0 2 1 0 3 0 0 0 0 2 0 0 12 1 1352.701 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841;K7EQJ5;S4R456;K7EJ78 K7EM56 33 44 RPS15 40S ribosomal protein S15 yes no 2;3 0.00019712 91.584 By MS/MS By MS/MS By matching By matching By MS/MS 3 3 1 2 2 0.67736 0.65406 15.477 11 Median 0.65696 0.65406 2.4005 3 0 Median 0.73839 0.65318 7.0771 3 0 Median NaN NaN NaN 0 0 Median 1.1462 1.031 NaN 1 0 Median 0.59971 0.68949 17.218 2 0 Median 0.79208 0.66811 12.064 2 0 Median 69217000 39559000 29658000 41270000 23704000 17566000 24876000 14185000 10691000 0 0 0 1030400 479660 550780 1343000 793340 549690 697140 396480 300660 5872 221 6116;6117 29902;29903;29904;29905;29906;29907;29908;29909;29910;29911;29912 30062;30063;30064;30065;30066;30067;30068;30069;30070;30071;30072;30073;30074;30075 30070 92 14 EAPTAYSLLIMHR DDTPDWVARIKNLMKEAPTAYSLLIMHRDV MKEAPTAYSLLIMHRDVIYAVRDPYGNRPL K E A H R D 2 1 0 0 0 0 1 0 1 1 2 0 1 0 1 1 1 0 1 0 0 0 13 0 1500.7759 Q06203 Q06203 179 191 PPAT Amidophosphoribosyltransferase yes yes 3 0.028142 20.585 By MS/MS By matching 1 1 1.0055 0.94329 11.383 2 Median 1.0274 1.0224 NaN 1 0 Median 0.98411 0.87034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2293800 995410 1298400 1840300 791820 1048500 453520 203590 249930 0 0 0 0 0 0 0 0 0 0 0 0 5873 2722 6118 29913;29914 30076 30076 1 EAPVDVLTQIGR AQSRRDFAPPGQQKREAPVDVLTQIGRSVR QKREAPVDVLTQIGRSVRGTLDAWIGPETM R E A G R S 1 1 0 1 0 1 1 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 12 0 1296.7038 Q9BVC6 Q9BVC6 48 59 TMEM109 Transmembrane protein 109 yes yes 2 3.5774E-05 96.143 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 1 1 1.0551 0.99365 20.265 15 Median 0.97652 0.89784 22.958 3 0 Median 1.1491 0.96263 24.835 4 0 Median 1.0356 0.99365 9.2408 3 0 Median 1.2832 1.0656 26.826 3 0 Median 0.95628 1.0119 NaN 1 0 Median 1.1167 0.87469 NaN 1 0 Median 623140000 305900000 317230000 299970000 149000000 150970000 26899000 12444000 14455000 277990000 136230000 141760000 6712800 2878700 3834100 8772100 4147700 4624400 2792200 1199400 1592800 5874 3851 6119 29915;29916;29917;29918;29919;29920;29921;29922;29923;29924;29925;29926;29927;29928;29929 30077;30078;30079;30080;30081;30082;30083;30084;30085;30086;30087;30088;30089;30090;30091;30092;30093 30082 17 EAPVPSLHLK TFTLPPVHRLSKDVREAPVPSLHLKLLSVV SKDVREAPVPSLHLKLLSVVPVPEGYSVKC R E A L K L 1 0 0 0 0 0 1 0 1 0 2 1 0 0 2 1 0 0 0 1 0 0 10 0 1089.6182 Q9GZN8;H7BYU9 Q9GZN8 82 91 C20orf27 UPF0687 protein C20orf27 yes no 2 0.0029582 58.433 By MS/MS By MS/MS By matching 1 1 1 0.89019 0.84096 4.0362 3 Median 0.89019 0.84096 NaN 1 0 Median 1.0186 0.87369 NaN 1 0 Median 0.83689 0.80596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17414000 8397600 9016600 9722100 4698700 5023400 5818100 2767300 3050800 1874000 931650 942330 0 0 0 0 0 0 0 0 0 5875 3909 6120 29930;29931;29932 30094;30095;30096;30097 30095 4 EAPWPSAQSEIR TANHRALQIPEVYLREAPWPSAQSEIRTIS YLREAPWPSAQSEIRTISAYKTPRDKVQCI R E A I R T 2 1 0 0 0 1 2 0 0 1 0 0 0 0 2 2 0 1 0 0 0 0 12 0 1369.6626 Q14C86;F8W9S7 Q14C86 1371 1382 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.00062518 65.719 By MS/MS By matching 1 1 0.8929 0.79437 14.35 2 Median 0.93033 0.87921 NaN 1 0 Median 0.85698 0.71772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7878700 4165200 3713500 6188300 3403100 2785200 1690400 762120 928250 0 0 0 0 0 0 0 0 0 0 0 0 5876 2907 6121 29933;29934 30098 30098 1 EAQAALAEAQEDLESER EDEGGARAQLLKSLREAQAALAEAQEDLES QAALAEAQEDLESERVARTKAEKQRRDLGE R E A E R V 5 1 0 1 0 2 5 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 17 0 1858.8545 Q7Z406;A0A0C4DFM8 Q7Z406 1132 1148 MYH14 Myosin-14 yes no 2 4.8034E-07 89.231 By MS/MS By matching 1 1 1.0029 0.90613 7.8361 2 Median 0.9008 0.85729 NaN 1 0 Median 1.1165 0.95776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6154600 2824800 3329800 5390000 2461000 2929000 764540 363790 400750 0 0 0 0 0 0 0 0 0 0 0 0 5877 3242 6122 29935;29936 30099 30099 1 EAQAELEDYR DELNKQVSELSQLYKEAQAELEDYRKRKSL SQLYKEAQAELEDYRKRKSLEDVTAEYIHK K E A Y R K 2 1 0 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 10 0 1222.5466 Q9P0K7 Q9P0K7 654 663 RAI14 Ankycorbin yes yes 2 0.042328 64.04 By MS/MS 1 1.1746 1.0017 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1746 1.0017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1116700 550490 566170 0 0 0 0 0 0 0 0 0 1116700 550490 566170 0 0 0 0 0 0 5878 4204 6123 29937 30100 30100 0 EAQAVPATLPELEATK QGAEEVLRAHEEQLKEAQAVPATLPELEAT AQAVPATLPELEATKASLKKLRAQAEAQQP K E A T K A 4 0 0 0 0 1 3 0 0 0 2 1 0 0 2 0 2 0 0 1 0 0 16 0 1666.8778 Q15149;H0YDN1 Q15149 1251 1266 PLEC Plectin yes no 2 7.593E-07 94.122 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1 1 0.92021 0.85867 9.5848 8 Median 0.90525 0.90787 NaN 1 0 Median 0.99044 0.88067 10.547 3 0 Plateau 0.72689 0.7781 NaN 1 0 Median 1.0147 0.95444 NaN 1 0 Median 0.79286 0.83721 NaN 1 0 Median 1.0833 0.92854 NaN 1 0 Median 44099000 22876000 21224000 15488000 8660200 6827700 15202000 7624400 7577700 8744000 3986500 4757500 926270 450580 475690 2558900 1606700 952200 1180300 547480 632780 5879 2933 6124 29938;29939;29940;29941;29942;29943;29944;29945 30101;30102;30103;30104;30105;30106;30107;30108;30109 30101 9 EAQDDLVK RRKEDEVEEWQHRAKEAQDDLVKTKEELHL EWQHRAKEAQDDLVKTKEELHLVMTAPPPP K E A V K T 1 0 0 2 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 916.45018 P15311;E7EQR4 P15311 451 458 EZR Ezrin yes no 2 0.010415 58.917 By MS/MS 1 1.1567 1.0035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1567 1.0035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1997600 887530 1110100 0 0 0 0 0 0 0 0 0 1997600 887530 1110100 0 0 0 0 0 0 5880 879 6125 29946 30110 30110 1 EAQEEIAFLK SQKHKELSVLLLEMKEAQEEIAFLKLQLQG LLEMKEAQEEIAFLKLQLQGKRAEEADHEV K E A L K L 2 0 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1176.6027 Q14789;E7EU81;H0Y867 Q14789 568 577 GOLGB1 Golgin subfamily B member 1 yes no 2 0.00033784 85.731 By MS/MS By matching 1 1 1.1468 1.181 6.9838 2 Median 1.1234 1.1241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1706 1.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median 27502000 12269000 15233000 8948600 3888900 5059700 0 0 0 0 0 0 0 0 0 18553000 8380000 10173000 0 0 0 5881 2900 6126 29947;29948 30111 30111 1 EAQELSQNSAIK SGHQGRTIIFCETKKEAQELSQNSAIKQDA TKKEAQELSQNSAIKQDAQSLHGDIPQKQR K E A I K Q 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 Q9NR30 Q9NR30 450 461 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0003869 137.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.3123 1.1465 24.322 5 Median NaN NaN NaN 0 0 Median 1.3123 1.1465 NaN 1 0 Median 1.4354 1.5781 NaN 1 0 Median 1.1186 0.97006 NaN 1 1 Median 1.3525 1.3983 NaN 1 0 Median 1.0247 0.88202 NaN 1 0 Median 20506000 8614100 11892000 0 0 0 6399000 2824500 3574500 6295700 2351500 3944200 2570800 1128000 1442900 4673200 2035800 2637400 567720 274300 293430 5882 4076 6127 29949;29950;29951;29952;29953 30112;30113;30114;30115;30116;30117 30115 6 EAQGNSSAGVEAAEQRPVEDGER VAPKETAELSETLTREAQGNSSAGVEAAEQ GVEAAEQRPVEDGERGMKPTEGWKWTLNSR R E A E R G 4 2 1 1 0 2 5 3 0 0 0 0 0 0 1 2 0 0 0 2 0 0 23 1 2385.0793 A0A0G2JHC2;Q6NYC8 A0A0G2JHC2 302 324 PPP1R18 Phostensin yes no 3 0.035418 19.722 By MS/MS 1 0.91223 1.0541 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91223 1.0541 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3332500 2061300 1271200 0 0 0 0 0 0 3332500 2061300 1271200 0 0 0 0 0 0 0 0 0 5883 275 6128 29954 30118 30118 1 EAQKGGHFYSAKPEILR VSKRLLKPYTGSKSKEAQKGGHFYSAKPEI QKGGHFYSAKPEILRAMQRADEALNKDKIK K E A L R A 2 1 0 0 0 1 2 2 1 1 1 2 0 1 1 1 0 0 1 0 0 0 17 2 1930.0061 P52701;A0A494C0M1;A0A087WWJ1;C9JH55;C9J8Y8;C9J7Y7 P52701 158 174 MSH6 DNA mismatch repair protein Msh6 yes no 4 0.061896 9.7575 By MS/MS By matching 1 1 0.75213 0.82547 17.093 2 Median 0.88122 0.93152 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64195 0.73149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4457800 2539100 1918700 2526300 1451700 1074700 0 0 0 1931400 1087400 844020 0 0 0 0 0 0 0 0 0 5884 2453 6129 29955;29956 30119 30119 1 EAQLEAEVK ELERELEANKKEKMKEAQLEAEVKLLRKEN KKEKMKEAQLEAEVKLLRKENEALRRHIAV K E A V K L 2 0 0 0 0 1 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1015.5186 F5H1Y4;Q9HD26 F5H1Y4 172 180 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 2 0.015183 43.808 By MS/MS 1 0.86719 0.74586 NaN 1 Median NaN NaN NaN 0 0 Median 0.86719 0.74586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1924100 986930 937200 0 0 0 1924100 986930 937200 0 0 0 0 0 0 0 0 0 0 0 0 5885 1023 6130 29957 30120 30120 1 EAQLYAAQAHLK MLDLAKIIFKRQETKEAQLYAAQAHLKLGE ETKEAQLYAAQAHLKLGEVSVESENYVQAV K E A L K L 4 0 0 0 0 2 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1341.7041 P49321;Q5T624;E9PRH9;H0YF33;E9PI86 P49321 536 547 NASP Nuclear autoantigenic sperm protein yes no 2;3 0.00010641 91.087 By MS/MS By MS/MS 4 10 1.0748 0.9318 22.939 14 Median 1.1186 1.0749 10.883 4 0 Median 0.93816 0.82186 23.471 10 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 321150000 144500000 176650000 190430000 84793000 105640000 130720000 59704000 71012000 0 0 0 0 0 0 0 0 0 0 0 0 5886 2376 6131 29958;29959;29960;29961;29962;29963;29964;29965;29966;29967;29968;29969;29970;29971 30121;30122;30123;30124;30125;30126;30127;30128;30129;30130;30131;30132;30133;30134;30135;30136 30123 16 EAQNDLEQVLR QEQQALQQSTTAKLREAQNDLEQVLRQIGD AKLREAQNDLEQVLRQIGDKDQKIQNLEAL R E A L R Q 1 1 1 1 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1313.6575 Q15075 Q15075 506 516 EEA1 Early endosome antigen 1 yes yes 2 0.00017515 96.331 By MS/MS By MS/MS 1 1 0.95359 0.85545 7.2064 2 Median 0.95527 0.90017 NaN 1 0 Median 0.95191 0.81295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14191000 7033700 7157300 7739400 3738300 4001100 6451700 3295400 3156200 0 0 0 0 0 0 0 0 0 0 0 0 5887 2926 6132 29972;29973 30137;30138;30139;30140 30137 4 EAQNLSAMEIR HGLPIEIKVLSELGREAQNLSAMEIRKKAR ELGREAQNLSAMEIRKKARSFAKAAIEKQK R E A I R K 2 1 1 0 0 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 11 0 1260.6132 Q9NSE4 Q9NSE4 171 181 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.00015742 90.108 By matching By MS/MS 2 1 1.2638 1.0726 24.735 3 Median 1.0059 0.98313 34.25 2 0 Median 1.2789 1.0726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18933000 9817200 9115600 11049000 6135900 4912900 7884000 3681300 4202700 0 0 0 0 0 0 0 0 0 0 0 0 5888 4103 6133 29974;29975;29976 30141;30142 30142 2 EAQNSHVYWWR ENIRVTVIPFYMGMREAQNSHVYWWRYCIR MGMREAQNSHVYWWRYCIRLENLDSDVVQL R E A W R Y 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 2 1 1 0 0 11 0 1474.6742 Q9Y2S7;B4DEM9 Q9Y2S7 254 264 POLDIP2 Polymerase delta-interacting protein 2 yes no 3 0.024161 23.236 By MS/MS By matching By matching By matching 1 1 1 1 1.2263 1.1264 22.821 4 Median 1.1021 1.0984 NaN 1 0 Median 1.8598 1.6627 NaN 1 0 Median 1.0201 0.98099 NaN 1 0 Median 1.3645 1.1552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5312000 2321800 2990200 3269000 1365400 1903600 279820 98872 180940 1581000 784800 796230 182090 72715 109370 0 0 0 0 0 0 5889 4390 6134 29977;29978;29979;29980 30143;30144 30144 2 EAQQALGSAAADATEAK PAINQTITEANEKTREAQQALGSAAADATE QQALGSAAADATEAKNKAHEAERIASAVQK R E A A K N 7 0 0 1 0 2 2 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 17 0 1630.7798 P11047 P11047 1407 1423 LAMC1 Laminin subunit gamma-1 yes yes 2 2.2518E-05 69.345 By MS/MS 1 2.048 1.8193 NaN 1 Median NaN NaN NaN 0 0 Median 2.048 1.8193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3074900 890360 2184500 0 0 0 3074900 890360 2184500 0 0 0 0 0 0 0 0 0 0 0 0 5890 1949 6135 29981 30145 30145 1 EAQQYSEALASTR KHGVPPLKLCKNLNREAQQYSEALASTRIL NREAQQYSEALASTRILKHSPESSRGQCGE R E A T R I 3 1 0 0 0 2 2 0 0 0 1 0 0 0 0 2 1 0 1 0 0 0 13 0 1452.6845 Q5VZR0;Q9H4G4 Q5VZR0 38 50 GLIPR2 Golgi-associated plant pathogenesis-related protein 1 yes no 2 0.00022946 91.855 By MS/MS By MS/MS By MS/MS 1 1 1 0.77212 0.64108 18.85 3 Median NaN NaN NaN 0 0 Median 0.77212 0.64108 NaN 1 1 Median 0.57951 0.55582 NaN 1 0 Median 0.9794 0.80755 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8482900 5126700 3356200 0 0 0 1979300 1156300 822990 5765900 3617100 2148800 737730 353370 384360 0 0 0 0 0 0 5891 3118 6136 29982;29983;29984 30146;30147;30148 30147 3 EAQRDYLDFLDDEEDQGIYQSK ______________________________ DFLDDEEDQGIYQSKVRELISDNQYRLIVN R E A S K V 1 1 0 5 0 3 3 1 0 1 2 1 0 1 0 1 0 0 2 0 0 0 22 1 2676.1827 P25205 P25205 14 35 MCM3 DNA replication licensing factor MCM3 yes yes 3 2.0906E-09 56.055 By MS/MS 1 0.81392 0.84533 NaN 1 Median 0.81392 0.84533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2704300 1409200 1295100 2704300 1409200 1295100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5892 2129 6137 29985 30149;30150 30149 2 EAQTLDSQIQETSI GLNGHPTLSGGGDQREAQTLDSQIQETSI_ REAQTLDSQIQETSI_______________ R E A S I - 1 0 0 1 0 3 2 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 14 0 1561.7471 E7EVA0;P27816 E7EVA0 2284 2297 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00011372 83.862 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10297000 0 0 0 0 0 0 0 0 10297000 0 0 0 0 0 0 0 0 0 0 0 5893 895 6138 29986 30151 30151 1 EAQTSFLHLGYLPNQLFR DILAPTVQELAALEKEAQTSFLHLGYLPNQ TSFLHLGYLPNQLFRTF_____________ K E A F R T 1 1 1 0 0 2 1 1 1 0 4 0 0 2 1 1 1 0 1 0 0 0 18 0 2133.1007 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 640 657 DDX1 ATP-dependent RNA helicase DDX1 yes no 3 1.4393E-06 68.481 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 4 1 1 3 0.99443 0.97807 25.578 12 Median 1.3503 1.3216 63.334 2 0 Median 1.1533 0.99751 NaN 1 0 Median 0.93626 0.97155 12.071 4 0 Median 1.1251 0.96947 NaN 1 0 Median 0.99172 1.0529 NaN 1 0 Median 0.99715 0.87533 14.457 3 0 Median 82360000 40301000 42059000 15764000 7796000 7967600 27708000 13093000 14615000 31769000 15897000 15872000 2337700 1080000 1257700 2260800 1114500 1146300 2521800 1321000 1200900 5894 135 6139 29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997;29998 30152;30153;30154;30155;30156;30157;30158;30159;30160;30161;30162;30163;30164 30161 13 EAQVQYPLQTFAIGMEDSPDLLAAR LDSSLVAATLLKQLKEAQVQYPLQTFAIGM FAIGMEDSPDLLAARKVADHIGSEHYEVLF K E A A R K 4 1 0 2 0 3 2 1 0 1 3 0 1 1 2 1 1 0 1 1 0 0 25 0 2762.3585 P08243;F8WEJ5 P08243 276 300 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 3 0.0097452 18.248 By MS/MS 1 1.0793 1.0953 NaN 1 Median 1.0793 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1409900 664080 745790 1409900 664080 745790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5895 1901 6140 29999 30165;30166 30166 2 EAQVYQAFK GGKPANFLDLGGGVKEAQVYQAFKLLTADP LGGGVKEAQVYQAFKLLTADPKVEAILVNI K E A F K L 2 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 9 0 1082.5397 Q96I99;E9PDQ8 Q96I99 339 347 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.003417 65.252 By MS/MS By MS/MS 1 2 1.6916 1.4474 56.504 3 Median 0.97676 0.90867 NaN 1 0 Median 2.2024 2.0123 46.6 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18589000 7221200 11367000 9635400 4232500 5402900 8953100 2988700 5964400 0 0 0 0 0 0 0 0 0 0 0 0 5896 3678 6141 30000;30001;30002 30167;30168 30167 2 EASADLSPYVR IRVPIIVPIMMLAIKEASADLSPYVRKNAA LAIKEASADLSPYVRKNAAHAIQKLYSLDP K E A V R K 2 1 0 1 0 0 1 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 11 0 1206.5881 O00203 O00203 157 167 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.00088993 85.731 By MS/MS By MS/MS 1 1 1.3859 1.2457 13.189 2 Median 1.4193 1.3675 NaN 1 1 Median 1.3533 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19424000 7405400 12019000 11402000 4772800 6628900 8022600 2632600 5389900 0 0 0 0 0 0 0 0 0 0 0 0 5897 1447 6142 30003;30004 30169;30170 30169 2 EASAVLFTITK ELLDKILRQKFFSEREASAVLFTITKTVEY FSEREASAVLFTITKTVEYLHAQGVVHRDL R E A T K T 2 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1178.6547 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 486 496 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.00077434 62.823 By MS/MS By matching By matching 1 1 1 1.2573 1.1035 47.062 3 Median 1.0711 0.97334 NaN 1 0 Median 1.2573 1.1035 NaN 1 0 Median 2.0832 2.3247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16786000 8329400 8456600 10966000 5618900 5346900 3494800 1583600 1911200 2325400 1126800 1198500 0 0 0 0 0 0 0 0 0 5898 581 6143 30005;30006;30007 30171;30172 30172 2 EASDIILTDDNFTSIVK DVGFAMGIAGTDVAKEASDIILTDDNFTSI SDIILTDDNFTSIVKAVMWGRNVYDSISKF K E A V K A 1 0 1 3 0 0 1 0 0 3 1 1 0 1 0 2 2 0 0 1 0 0 17 0 1879.9415 P20020;E7ERY9;P23634 P23634 812 828 ATP2B1;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 4 no no 2 2.7515E-13 117.23 By MS/MS By matching 2 2 1.0662 0.9969 24.12 4 Median 0.85433 0.82731 6.6831 2 1 Median 1.4128 1.2331 10.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9433400 4551900 4881600 7400100 3703900 3696200 2033300 847980 1185300 0 0 0 0 0 0 0 0 0 0 0 0 5899 2119;2071 6144 30008;30009;30010;30011 30173;30174;30175 30173 3 EASDPQPEEADGGLK DPRNKISFKFDHLRKEASDPQPEEADGGLK EASDPQPEEADGGLKSWRESCDSALRAYVK K E A L K S 2 0 0 2 0 1 3 2 0 0 1 1 0 0 2 1 0 0 0 0 0 0 15 0 1541.6845 P52907 P52907 104 118 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2 3.7955E-08 124.42 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.92201 0.7753 10.225 3 Median 0.71452 0.66309 NaN 1 0 Median 0.92201 0.7753 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95525 0.8037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23274000 12349000 10925000 9724800 5607400 4117400 9232800 4669400 4563400 0 0 0 4316100 2071800 2244300 0 0 0 0 0 0 5900 2461 6145 30012;30013;30014;30015 30176;30177;30178;30179;30180;30181;30182 30180 7 EASFEYLQNEGER FFVRAIIRHSDLVTKEASFEYLQNEGERLL TKEASFEYLQNEGERLLLEAMDELEVAFNN K E A E R L 1 1 1 0 0 1 4 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 13 0 1570.69 Q13085;Q59FY4;O00763;F8W8T8;H0YGH5 Q13085 1436 1448 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.00013615 141.95 By MS/MS By MS/MS 2 1 0.9744 0.95525 11.498 3 Median 0.97231 0.9388 2.4559 2 1 Median 1.3603 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18397000 9335200 9062300 16576000 8544600 8031100 1821800 790630 1031100 0 0 0 0 0 0 0 0 0 0 0 0 5901 2784 6146 30016;30017;30018 30183;30184;30185 30183 3 EASFVLHTIGK ELLDKILRQKFFSEREASFVLHTIGKTVEY FSEREASFVLHTIGKTVEYLHSQGVVHRDL R E A G K T 1 0 0 0 0 0 1 1 1 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1200.6503 E9PGT3;Q15418;Q5SVM6 E9PGT3 500 510 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 3 0.042433 28.806 By MS/MS 1 1.2337 1.2117 NaN 1 Median 1.2337 1.2117 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2234400 1071300 1163000 2234400 1071300 1163000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5902 926 6147 30019 30186 30186 1 EASGDLPEAQIVK NLGVAVIHDYADWVKEASGDLPEAQIVKHW VKEASGDLPEAQIVKHWSLTWTLCEALWGH K E A V K H 2 0 0 1 0 1 2 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1355.6933 P52948;A0A3B3ITD8;H7C3P6 P52948 1255 1267 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00060017 69.65 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0073 1.0891 12.162 5 Median NaN NaN NaN 0 0 Median 0.97581 0.83467 NaN 1 0 Median 1.0143 1.1028 1.089 2 2 Median 1.12 0.97008 NaN 1 0 Median 0.93101 1.0891 NaN 1 0 Median NaN NaN NaN 0 0 Median 41832000 20064000 21768000 0 0 0 1183300 589310 593990 30524000 14822000 15702000 5683900 2485100 3198900 4441300 2168200 2273100 0 0 0 5903 2462 6148 30020;30021;30022;30023;30024 30187;30188;30189;30190 30190 4 EASGETTGVDITK GNEVDSQSSIRTEAKEASGETTGVDITKIQ AKEASGETTGVDITKIQVKRCETMREKHMQ K E A T K I 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 1 3 0 0 1 0 0 13 0 1306.6252 O75152;E9PQ61 O75152 541 553 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.0011407 58.676 By MS/MS By MS/MS By MS/MS 1 1 1 1.2698 1.3107 20.885 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91414 0.94993 NaN 1 0 Median 1.6692 1.4051 NaN 1 1 Median 1.2698 1.3107 NaN 1 0 Median NaN NaN NaN 0 0 Median 4172900 1886100 2286800 0 0 0 0 0 0 1094400 471140 623220 663070 237370 425700 2415400 1177600 1237900 0 0 0 5904 1650 6149 30025;30026;30027 30191;30192;30193 30192 3 EASMVITESPAALQLR VIAAEGEMNASRALKEASMVITESPAALQL ASMVITESPAALQLRYLQTLTTIAAEKNST K E A L R Y 3 1 0 0 0 1 2 0 0 1 2 0 1 0 1 2 1 0 0 1 0 0 16 0 1714.8924 P27105 P27105 236 251 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.00013713 58.676 By matching By MS/MS By matching 1 3 1 0.75114 0.66824 60.43 5 Median 0.98502 0.95062 NaN 1 0 Median 0.74857 0.63686 4.7358 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1121 2.5643 NaN 1 0 Median 5095700 2676400 2419200 2412700 1198500 1214100 2433800 1425900 1007900 0 0 0 0 0 0 0 0 0 249140 52026 197120 5905 2150 6150 30028;30029;30030;30031;30032 30194 30194 1 EASRPPEEPSAPSPTLPAQFK SYIPSSETPPAPSSREASRPPEEPSAPSPT EEPSAPSPTLPAQFKQRAPMYNSGLSPATP R E A F K Q 3 1 0 0 0 1 3 0 0 0 1 1 0 1 6 3 1 0 0 0 0 0 21 1 2235.1172 H0Y3X6;A0A0C4DFX9;Q9H3P2 H0Y3X6 355 375 NELFA Negative elongation factor A yes no 3 1.9962E-13 85.974 By MS/MS By MS/MS 1 2 0.42849 0.41185 37.716 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21953 0.23298 NaN 1 0 Median 0.48176 0.44245 10.137 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9547100 7201200 2345800 0 0 0 0 0 0 5771000 4569700 1201300 3776000 2631500 1144500 0 0 0 0 0 0 5906 231 6151 30033;30034;30035 30195;30196 30195 2 EASYSLIR EDVLPLAFTRLCEPKEASYSLIRKYVSQYY TRLCEPKEASYSLIRKYVSQYYPKLRVDIR K E A I R K 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 8 0 937.4869 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 275 282 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.047108 53.166 By MS/MS 1 0.69904 0.72874 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69904 0.72874 NaN 1 1 Median NaN NaN NaN 0 0 Median 4970000 3119400 1850600 0 0 0 0 0 0 0 0 0 0 0 0 4970000 3119400 1850600 0 0 0 5907 3075 6152 30036 30197 30197 1 EATADDLIK VVANLQYDDGSGMKREATADDLIKVVEELT GSGMKREATADDLIKVVEELTRIH______ R E A I K V 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 974.49204 Q16531 Q16531 1123 1131 DDB1 DNA damage-binding protein 1 yes yes 2 0.0038329 62.546 By MS/MS By MS/MS By MS/MS 1 2 1 0.93936 0.89803 34.099 4 Median NaN NaN NaN 0 0 Median 1.3396 1.1338 NaN 1 0 Median 0.63487 0.67793 6.7918 2 1 Median 1.5027 1.2915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22054000 10167000 11888000 0 0 0 10800000 4312900 6487000 7642400 4457400 3185000 3612000 1396400 2215600 0 0 0 0 0 0 5908 2985 6153 30037;30038;30039;30040 30198;30199;30200;30201 30200 4 EATAGNPGGQTVR SDMELLFDIFLETVKEATAGNPGGQTVRER VKEATAGNPGGQTVRERLTERLCPPGIPTP K E A V R E 2 1 1 0 0 1 1 3 0 0 0 0 0 0 1 0 2 0 0 1 0 0 13 0 1256.6109 F8VPD4;P27708 F8VPD4 359 371 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.014278 33.961 By MS/MS 1 0.92179 0.81473 NaN 1 Median NaN NaN NaN 0 0 Median 0.92179 0.81473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 429260 219430 209830 0 0 0 429260 219430 209830 0 0 0 0 0 0 0 0 0 0 0 0 5909 1057 6154 30041 30202 30202 1 EATAQKPTGSVGSTVTTPPPLVR KLVLLKKLRQSQIQKEATAQKPTGSVGSTV GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS K E A V R G 2 1 0 0 0 1 1 2 0 0 1 1 0 0 4 2 5 0 0 3 0 0 23 1 2293.2278 Q86YP4 Q86YP4 173 195 GATAD2A Transcriptional repressor p66-alpha yes yes 3 1.0246E-19 87.326 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 0.54855 0.54526 8.2752 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4862 0.51773 NaN 1 0 Median 0.5545 0.51238 9.555 3 0 Median 0.52203 0.57424 NaN 1 0 Median 0.69342 0.60594 NaN 1 0 Median 68938000 44692000 24246000 0 0 0 0 0 0 44812000 29664000 15148000 10596000 6855300 3740200 12338000 7524300 4813400 1193100 648570 544510 5910 3309 6155 30042;30043;30044;30045;30046;30047 30203;30204;30205;30206;30207;30208;30209 30203 7 EATDAIGHLDR IVMPDGSGIYDPCEKEATDAIGHLDRQQRE PCEKEATDAIGHLDRQQREDITQSAQHALR K E A D R Q 2 1 0 2 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1196.5786 Q12906 Q12906 298 308 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 0.0001082 90.108 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 4 3 1.3423 1.2953 30.285 17 Median 1.4003 1.3426 NaN 1 0 Median 1.2024 1.0416 26.821 3 2 Median 1.3423 1.4256 28.057 3 1 Median 1.8564 1.5997 38.562 3 0 Median 1.2551 1.2884 24.273 4 1 Median 1.3 1.0521 16.736 3 0 Median 118790000 44417000 74373000 4784700 1627800 3156900 12102000 4246300 7855300 23164000 8390600 14774000 5408500 1338800 4069700 60700000 24290000 36410000 12631000 4523600 8107000 5911 2769 6156 30048;30049;30050;30051;30052;30053;30054;30055;30056;30057;30058;30059;30060;30061;30062;30063;30064;30065 30210;30211;30212;30213;30214;30215;30216;30217;30218;30219;30220;30221;30222;30223;30224;30225;30226 30212 17 EATDEELEK LIAKYVDSKLRAGNKEATDEELEKMLDKIM LRAGNKEATDEELEKMLDKIMIIFRFIYGK K E A E K M 1 0 0 1 0 0 4 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1062.4717 Q13620;K4DI93 Q13620 577 585 CUL4B Cullin-4B yes no 2 0.0013697 82.279 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.96167 0.96688 26.897 6 Median 0.89303 0.89135 4.4488 2 0 Median 0.76215 0.65472 NaN 1 0 Median 1.0192 1.0767 NaN 1 0 Median 1.1669 1.0163 NaN 1 0 Median 1.4407 1.4789 NaN 1 0 Median NaN NaN NaN 0 0 Median 10894000 5769300 5124700 3073500 1576000 1497400 4205500 2510500 1695000 1792600 943940 848680 564400 244380 320020 1258000 494400 763560 0 0 0 5912 1358 6157 30066;30067;30068;30069;30070;30071 30227;30228;30229;30230;30231 30229 5 EATDEELER LIAKHVDSKLRAGNKEATDEELERTLDKIM LRAGNKEATDEELERTLDKIMILFRFIHGK K E A E R T 1 1 0 1 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1090.4778 Q13619;A0A0A0MR50 Q13619 423 431 CUL4A Cullin-4A yes no 2 0.049206 31.229 By MS/MS 1 0.90231 0.90185 NaN 1 Median 0.90231 0.90185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 541760 305550 236210 541760 305550 236210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5913 2832 6158 30072 30232 30232 1 EATEQEIR ______________________________ FIGNLPREATEQEIRSLFEQYGKVLECDII R E A I R S 1 1 0 0 0 1 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 974.46689 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 12 19 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0023933 117.17 By MS/MS 1 0.96568 1.0196 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96568 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median 3937000 2028800 1908200 0 0 0 0 0 0 0 0 0 0 0 0 3937000 2028800 1908200 0 0 0 5914 3870;3780 6159 30073 30233;30234 30234 2 EATGHFQESEPFSHIDPEESEETR LLAKASYKKAIILTREATGHFQESEPFSHI EPFSHIDPEESEETRLLNILGLIFKGPAAS R E A T R L 1 1 0 1 0 1 7 1 2 1 0 0 0 2 2 3 2 0 0 0 0 0 24 0 2787.1896 Q15021;E7EN77 Q15021 538 561 NCAPD2 Condensin complex subunit 1 yes no 4 1.3202E-05 47.564 By MS/MS By matching By MS/MS 1 1 1 0.78459 0.73735 24.368 3 Median 0.78459 0.73735 NaN 1 1 Median 1.1551 1.0188 NaN 1 0 Median 0.57452 0.63197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15023000 9081300 5941300 9530200 5550900 3979300 484510 256390 228120 5007900 3274100 1733800 0 0 0 0 0 0 0 0 0 5915 2915 6160 30074;30075;30076 30235;30236 30235 2 EATNPPVIQEEKPK EGGRELSDFISYLQREATNPPVIQEEKPKK REATNPPVIQEEKPKKKKKAQEDL______ R E A P K K 1 0 1 0 0 1 3 0 0 1 0 2 0 0 3 0 1 0 0 1 0 0 14 1 1578.8253 P30101 P30101 483 496 PDIA3 Protein disulfide-isomerase A3 yes yes 2;3 0.00023661 62.287 By MS/MS By MS/MS By MS/MS 2 3 1 0.7031 0.66677 16.826 6 Median 0.59657 0.56709 17.899 2 0 Median 0.73516 0.69078 12.308 3 1 Median NaN NaN NaN 0 0 Median 0.79636 0.79602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37239000 20760000 16479000 13549000 7746100 5802700 20547000 11189000 9358400 0 0 0 3143000 1825000 1318000 0 0 0 0 0 0 5916 2189 6161 30077;30078;30079;30080;30081;30082 30237;30238;30239;30240;30241;30242;30243;30244 30240 8 EATPVVHETEPESGSQPR EEPVFTRQDSNRSEKEATPVVHETEPESGS PVVHETEPESGSQPRPAVLSGYFKQFQKSL K E A P R P 1 1 0 0 0 1 4 1 1 0 0 0 0 0 3 2 2 0 0 2 0 0 18 0 1948.9126 E7EPN9;Q9Y520 E7EPN9 641 658 PRRC2C Protein PRRC2C yes no 3 0.0067971 34.094 By MS/MS 1 0.87829 0.74975 NaN 1 Median NaN NaN NaN 0 0 Median 0.87829 0.74975 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 825890 526300 299590 0 0 0 825890 526300 299590 0 0 0 0 0 0 0 0 0 0 0 0 5917 872 6162 30083 30245 30245 1 EATQILSVPK RQLPSLACKYPVSSREATQILSVPKVDDEI PVSSREATQILSVPKVDDEILGFISEATPL R E A P K V 1 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1084.6128 P42166 P42166 526 535 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.0013538 66.27 By MS/MS By MS/MS By matching By MS/MS 4 4 2 2 0.91345 0.80772 13.733 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76527 0.75807 5.8542 4 0 Median 1.0698 0.93623 8.0003 4 0 Median 0.94284 0.9487 17.567 2 0 Median 0.9158 0.75395 6.5996 2 0 Median 146000000 77539000 68460000 0 0 0 0 0 0 109530000 59090000 50436000 20627000 10098000 10529000 8537000 4874000 3663000 7308900 3477300 3831600 5918 2306 6163 30084;30085;30086;30087;30088;30089;30090;30091;30092;30093;30094;30095 30246;30247;30248;30249;30250;30251 30247 6 EATTDFTVDSR IKVFGPGIEGKDVFREATTDFTVDSRPLTQ DVFREATTDFTVDSRPLTQVGGDHIKAHIA R E A S R P 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 3 0 0 1 0 0 11 0 1240.5572 O75369;E7EN95 O75369 1246 1256 FLNB Filamin-B yes no 2 0.0037253 49.3 By MS/MS By matching By matching 1 1 1 1.1553 0.9703 34.17 3 Median NaN NaN NaN 0 0 Median 1.3234 1.1083 NaN 1 0 Median 0.55046 0.58032 NaN 1 0 Median 1.1553 0.9703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3713000 1969400 1743600 0 0 0 1688900 808280 880650 1591200 975970 615200 432900 185160 247740 0 0 0 0 0 0 5919 1664 6164 30096;30097;30098 30252 30252 1 EATTDFTVDSRPLTQVGGDHIK IKVFGPGIEGKDVFREATTDFTVDSRPLTQ VDSRPLTQVGGDHIKAHIANPSGASTECFV R E A I K A 1 1 0 3 0 1 1 2 1 1 1 1 0 1 1 1 4 0 0 2 0 0 22 1 2386.1765 O75369;E7EN95 O75369 1246 1267 FLNB Filamin-B yes no 3;4 4.9062E-18 100.28 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.92334 0.88482 9.2012 9 Median 0.93195 0.95737 9.1701 4 0 Median 0.92843 0.85029 0.59834 2 0 Median 0.72607 0.86995 2.3964 2 0 Median 1.1341 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 471620000 241760000 229860000 312360000 157950000 154410000 112020000 56041000 55980000 46923000 27619000 19304000 317770 145680 172090 0 0 0 0 0 0 5920 1664 6165 30099;30100;30101;30102;30103;30104;30105;30106;30107 30253;30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268 30257 16 EATTEFSVDAR VQCYGPGIEGQGVFREATTEFSVDARALTQ GVFREATTEFSVDARALTQTGGPHVKARVA R E A A R A 2 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1224.5622 P21333;Q60FE5;A0A087WWY3 P21333 1273 1283 FLNA Filamin-A no no 2 1.8518E-06 162.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 3 1 2 1.027 0.8698 46.719 12 Median 1.1104 1.0555 4.3557 2 0 Median 0.98829 0.83701 5.5787 3 0 Median 1.0943 1.1929 NaN 1 0 Median 1.011 0.89077 86.863 3 1 Median 1.1281 1.1629 NaN 1 0 Median 0.99584 0.81879 5.1772 2 1 Median 570300000 276170000 294140000 149010000 65734000 83279000 349510000 175710000 173800000 37421000 16934000 20486000 20044000 11503000 8540300 8843400 3623000 5220400 5471000 2661200 2809700 5921 2088;3120 6166 30108;30109;30110;30111;30112;30113;30114;30115;30116;30117;30118;30119 30269;30270;30271;30272;30273;30274;30275;30276;30277;30278;30279;30280;30281;30282;30283;30284;30285;30286;30287;30288;30289;30290;30291 30279 23 EATTNAPFR NAIYFKGNWKDKFMKEATTNAPFRLNKKDR KDKFMKEATTNAPFRLNKKDRKTVKMMYQK K E A F R L 2 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 9 0 1005.488 P30740 P30740 178 186 SERPINB1 Leukocyte elastase inhibitor yes yes 2 0.0030211 67.981 By MS/MS 1 0.93019 0.8006 NaN 1 Median NaN NaN NaN 0 0 Median 0.93019 0.8006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2450500 1219900 1230600 0 0 0 2450500 1219900 1230600 0 0 0 0 0 0 0 0 0 0 0 0 5922 2197 6167 30120 30292 30292 1 EATWTMSNITAGR VFPSLLTNPKTNIQKEATWTMSNITAGRQD QKEATWTMSNITAGRQDQIQQVVNHGLVPF K E A G R Q 2 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 3 1 0 0 0 0 13 0 1436.6718 P52292 P52292 354 366 KPNA2 Importin subunit alpha-1 yes yes 2 4.8234E-07 117.67 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1.4374 1.4031 20.773 8 Median 1.4694 1.4058 2.2933 2 0 Median 1.2498 1.0806 NaN 1 0 Median 1.4758 1.4841 5.9124 2 0 Median 1.2115 1.0377 16.401 2 1 Median 1.7762 1.7518 NaN 1 1 Median NaN NaN NaN 0 0 Median 79103000 31858000 47245000 20414000 8262800 12151000 1921800 809000 1112800 38212000 15188000 23024000 15813000 6687900 9125400 2741700 909940 1831800 0 0 0 5923 2448 6168;6169 30121;30122;30123;30124;30125;30126;30127;30128 30293;30294;30295;30296;30297;30298;30299;30300;30301;30302;30303;30304 30295 1143 12 EATWVVDVK GGIFAFKVKDGPGGKEATWVVDVKNGKGSV DGPGGKEATWVVDVKNGKGSVLPNSDKKAD K E A V K N 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 3 0 0 9 0 1045.5444 P22307;H0YF61 P22307 471 479 SCP2 Non-specific lipid-transfer protein yes no 2 0.0053299 57.96 By MS/MS By MS/MS By MS/MS 1 1 1 1.3726 1.1998 6.5653 3 Median 1.3726 1.2469 NaN 1 0 Median 1.4557 1.1998 NaN 1 0 Median 1.1526 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45860000 25263000 20596000 14754000 6568400 8185300 7459900 2826400 4633500 23646000 15869000 7777400 0 0 0 0 0 0 0 0 0 5924 2099 6170 30129;30130;30131 30305;30306;30307;30308 30308 4 EAVAMESYAK MAHAVTQLANRTPGKEAVAMESYAKALRML RTPGKEAVAMESYAKALRMLPTIIADNAGY K E A A K A 3 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 10 0 1097.5063 P78371;F5GWF6 P78371 432 441 CCT2 T-complex protein 1 subunit beta yes no 2 0.00041856 99.802 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 2 1.1987 1.1705 48.582 11 Median 1.5623 1.4116 28.78 4 1 Linear 1.1934 1.008 83.328 3 0 Median 1.225 1.2132 2.8424 2 1 Median 1.4454 1.255 24.764 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87041000 39002000 48039000 30012000 12832000 17180000 44393000 20767000 23627000 8137700 3562100 4575600 4497600 1841000 2656500 0 0 0 0 0 0 5925 2644 6171;6172 30132;30133;30134;30135;30136;30137;30138;30139;30140;30141;30142;30143;30144;30145 30309;30310;30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321 30312 1304 13 EAVAPVQEESDLEK RKEEERKKKETDQKKEAVAPVQEESDLEKK KEAVAPVQEESDLEKKRREAEALLQSMGLT K E A E K K 2 0 0 1 0 1 4 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 14 0 1542.7413 Q13409 Q13409 42 55 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2 3.0448E-07 127.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 0.75502 0.66743 42.047 6 Median 0.86745 0.79259 NaN 1 0 Median 0.93741 0.81949 NaN 1 0 Median 0.56011 0.5599 NaN 1 0 Median 0.80215 0.68996 29 2 0 Median NaN NaN NaN 0 0 Median 0.34474 0.27986 NaN 1 0 Median 53365000 30080000 23285000 8892200 4552900 4339300 5298300 2408100 2890100 21682000 13734000 7948300 14568000 7248700 7319500 0 0 0 2924300 2136700 787620 5926 2811 6173 30146;30147;30148;30149;30150;30151 30322;30323;30324;30325;30326;30327;30328;30329 30323 8 EAVAPVQEESDLEKK RKEEERKKKETDQKKEAVAPVQEESDLEKK EAVAPVQEESDLEKKRREAEALLQSMGLTP K E A K K R 2 0 0 1 0 1 4 0 0 0 1 2 0 0 1 1 0 0 0 2 0 0 15 1 1670.8363 Q13409 Q13409 42 56 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 3 0.001326 34.954 By MS/MS By matching By MS/MS 1 1 1 0.92919 0.90773 2.607 3 Median 0.84339 0.87002 NaN 1 0 Median 0.97791 0.91231 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92919 0.90773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9947300 5234100 4713200 4110500 2104800 2005700 2417600 1153200 1264400 0 0 0 3419200 1976100 1443100 0 0 0 0 0 0 5927 2811 6174 30152;30153;30154 30330;30331;30332 30330 2 EAVCEVALDYKK ASGIPYHSEVPVSLKEAVCEVALDYKKKKH SLKEAVCEVALDYKKKKHVFKLRLNDGNEY K E A K K K 2 0 0 1 1 0 2 0 0 0 1 2 0 0 0 0 0 0 1 2 0 0 12 1 1423.7017 Q01082;A0A087WUZ3 Q01082 2259 2270 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00014276 71.268 By MS/MS 1 1.1423 1.0898 NaN 1 Median NaN NaN NaN 0 0 Median 1.1423 1.0898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8503500 4055100 4448400 0 0 0 8503500 4055100 4448400 0 0 0 0 0 0 0 0 0 0 0 0 5928 2681 6175 30155 30333 30333 1 EAVEAIQNSTSIK KLPENYTDETWQKLKEAVEAIQNSTSIKYN LKEAVEAIQNSTSIKYNLEELYQAVENLCS K E A I K Y 2 0 1 0 0 1 2 0 0 2 0 1 0 0 0 2 1 0 0 1 0 0 13 0 1388.7147 Q13620;K4DI93;A6NE76 Q13620 222 234 CUL4B Cullin-4B yes no 2 2.7061E-07 117.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0403 0.97335 44.524 6 Median 0.55933 0.52268 59.536 2 1 Median 1.1932 1.0496 4.1149 2 0 Median 1.0098 1.1105 NaN 1 0 Median 1.0717 0.92929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27980000 15000000 12980000 13942000 8117100 5824900 4982900 2747100 2235800 6177200 2825900 3351300 2877600 1309400 1568200 0 0 0 0 0 0 5929 1358 6176 30156;30157;30158;30159;30160;30161;30162 30334;30335;30336;30337;30338 30334 5 EAVEENGVITDK DPEACYIGTEPWKPKEAVEENGVITDKADI KPKEAVEENGVITDKADIFAFGLTLWEMMT K E A D K A 1 0 1 1 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 12 0 1302.6303 Q96KB5 Q96KB5 216 227 PBK Lymphokine-activated killer T-cell-originated protein kinase yes yes 2 0.00052736 76.143 By MS/MS By MS/MS 1 1 1.2482 1.1433 36.229 2 Median 1.5074 1.4771 NaN 1 0 Median 1.0336 0.8849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2363100 1009000 1354100 933760 412930 520830 1429300 596100 833220 0 0 0 0 0 0 0 0 0 0 0 0 5930 3692 6177 30163;30164 30339;30340;30341 30341 3 EAVEKEFEPLLNWMK EGVKFDESEKTKESREAVEKEFEPLLNWMK EAVEKEFEPLLNWMKDKALKDKIEKAVVSQ R E A M K D 1 0 1 0 0 0 4 0 0 0 2 2 1 1 1 0 0 1 0 1 0 0 15 1 1861.9284 P14625 P14625 609 623 HSP90B1 Endoplasmin yes yes 2 0.0017527 60.434 By MS/MS 2 0.78139 0.81284 16.586 2 Median 0.78139 0.81284 16.586 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14182000 7382100 6799400 14182000 7382100 6799400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5931 2006 6178 30165;30166 30342 30342 1 EAVELPLTHFELYK YADIGGMDIQKQEVREAVELPLTHFELYKQ REAVELPLTHFELYKQIGIDPPRGVLMYGP R E A Y K Q 1 0 0 0 0 0 3 0 1 0 3 1 0 1 1 0 1 0 1 1 0 0 14 0 1687.8821 P43686 P43686 179 192 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.03822 25.386 By MS/MS 1 1.0538 1.0309 NaN 1 Median 1.0538 1.0309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1444900 660330 784550 1444900 660330 784550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5932 2327 6179 30167 30343 30343 1 EAVFFQSHSAR LPRTEDHPCQKCGHKEAVFFQSHSARAEDA CGHKEAVFFQSHSARAEDAMRLYYVCTAPH K E A A R A 2 1 0 0 0 1 1 0 1 0 0 0 0 2 0 2 0 0 0 1 0 0 11 0 1277.6153 P36954 P36954 93 103 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes yes 2;3 0.00011287 138.98 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.088 1.0047 14.909 8 Median 1.1201 1.0935 14.322 2 0 Median 1.1842 1.0047 1.8591 2 0 Median 0.78468 0.79433 2.2562 2 1 Median NaN NaN NaN 0 0 Median 0.96048 1.0225 NaN 1 0 Median 1.4493 1.1249 NaN 1 0 Median 24043000 10345000 13698000 5572600 2397700 3174900 11641000 4600600 7040700 5145600 2538300 2607300 0 0 0 1327300 693280 634000 355740 114700 241050 5933 2264 6180 30168;30169;30170;30171;30172;30173;30174;30175 30344;30345;30346;30347;30348;30349;30350;30351 30351 8 EAVGDLLDAFK SVPKRRRKIKELNKKEAVGDLLDAFKEANP LNKKEAVGDLLDAFKEANPAVPEVENQPPA K E A F K E 2 0 0 2 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1176.6027 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 361 371 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0092274 39.022 By MS/MS By matching By matching By matching By matching 2 2 3 1 1 1.1521 1.0689 29.603 9 Median 1.1655 1.1467 4.2532 2 0 Median 1.002 0.87152 15.282 2 0 Median 1.3395 1.4927 28.102 3 0 Median 1.2433 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81505 0.70792 NaN 1 0 Median 55120000 26758000 28363000 15074000 6642100 8431700 34320000 17587000 16734000 5302100 2346800 2955300 263400 97093 166300 0 0 0 160820 85050 75769 5934 894 6181 30176;30177;30178;30179;30180;30181;30182;30183;30184 30352;30353 30352 2 EAVGHTGYLTFATK AGSDTSPFRSGTPMKEAVGHTGYLTFATKT KEAVGHTGYLTFATKTPG____________ K E A T K T 2 0 0 0 0 0 1 2 1 0 1 1 0 1 0 0 3 0 1 1 0 0 14 0 1493.7514 Q96FX7;H0Y2Q1 Q96FX7 273 286 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes no 3 0.0012112 38.028 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0384 0.9422 11.8 5 Median 1.2699 1.1599 NaN 1 0 Median 1.0375 0.88019 0.93015 2 0 Median 0.96475 0.9422 NaN 1 0 Median 1.2121 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22302000 9613700 12689000 16414000 6847000 9567500 3898800 1823400 2075400 1069700 565380 504350 919430 377820 541610 0 0 0 0 0 0 5935 3650 6182 30185;30186;30187;30188;30189 30354;30355;30356;30357 30355 4 EAVILPIK WSDVAGLEGAKEALKEAVILPIKFPHLFTG GAKEALKEAVILPIKFPHLFTGKRTPWRGI K E A I K F 1 0 0 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 0 881.5586 Q9UN37;I3L4J1;O75351 O75351 148 155 VPS4A;VPS4B Vacuolar protein sorting-associated protein 4A;Vacuolar protein sorting-associated protein 4B no no 2 0.026188 42.095 By matching By MS/MS 1 2 1.0109 1.015 17.547 3 Median NaN NaN NaN 0 0 Median 0.93731 0.80647 NaN 1 0 Median 1.0588 1.0749 8.0991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5731700 2691600 3040100 0 0 0 1877700 908110 969610 3854000 1783500 2070500 0 0 0 0 0 0 0 0 0 5936 1661;4339 6183 30190;30191;30192 30358 30358 1 EAVLLLKK PLVVEDKVEGYKKTKEAVLLLKKLKAWNDI EGYKKTKEAVLLLKKLKAWNDIKKVYASQR K E A K K L 1 0 0 0 0 0 1 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 8 1 912.6008 P36578;H3BM89;H3BTP7 P36578 166 173 RPL4 60S ribosomal protein L4 yes no 2 0.0070332 78.616 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.448 1.3753 12.002 5 Median 1.1024 1.0572 NaN 1 0 Median 1.5026 1.4166 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.448 1.3753 NaN 1 0 Median 1.2291 1.3116 NaN 1 0 Median 1.5571 1.3878 NaN 1 0 Median 21386000 8692200 12694000 6065400 2692800 3372500 1007900 334510 673370 0 0 0 3130300 1291600 1838700 7144700 3015500 4129300 4038100 1357800 2680300 5937 2260 6184 30193;30194;30195;30196;30197 30359;30360;30361 30361 3 EAVLLNLK IKSEEAKRQQLGIEKEAVLLNLKSNQELSE QQLGIEKEAVLLNLKSNQELSEQGTSFSQT K E A L K S 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 Q9H9J2 Q9H9J2 113 120 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 2 0.0096746 60.358 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.3295 1.1954 20.521 4 Median 0.99161 0.93121 NaN 1 0 Median 1.4385 1.2123 NaN 1 0 Median 1.2287 1.1788 NaN 1 0 Median 1.7977 1.5382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11970000 5500100 6470000 6686500 3311300 3375200 2461500 891290 1570200 2258900 1125600 1133300 563300 172010 391290 0 0 0 0 0 0 5938 4000 6185 30198;30199;30200;30201 30362;30363 30362 2 EAVLNAYR RRMLPLIWSKEPGVREAVLNAYRQLYLNPK SKEPGVREAVLNAYRQLYLNPKGDSARAKA R E A Y R Q 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 934.48723 Q15021;E7EN77 Q15021 691 698 NCAPD2 Condensin complex subunit 1 yes no 2 6.8633E-07 128.75 By MS/MS By MS/MS By matching 1 1 1 1.1429 0.95763 16.002 3 Median 1.155 1.1273 NaN 1 0 Median 1.1429 0.95763 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.90392 0.81856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12855000 6306500 6548900 3451100 1927200 1523800 8663600 3977300 4686400 0 0 0 740670 401960 338710 0 0 0 0 0 0 5939 2915 6186 30202;30203;30204 30364;30365;30366 30366 3 EAVLSLYR ______________________________ ______________________________ R E A Y R A 1 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 949.52328 L0R8F8 L0R8F8 7 14 SMCR7L yes yes 2 9.8244E-06 162.51 By matching By MS/MS 2 1 1.5303 1.2642 9.4538 3 Plateau 1.3134 1.2553 13.357 2 0 Median 1.563 1.2642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27452000 11048000 16403000 14322000 5874800 8447000 13130000 5173500 7956400 0 0 0 0 0 0 0 0 0 0 0 0 5940 1406 6187 30205;30206;30207 30367;30368 30367 2 EAVNLQQDAFVVIGR EEQDMQRVLIDISEKEAVNLQQDAFVVIGR EAVNLQQDAFVVIGRDTRPSSEKLSQSVID K E A G R D 2 1 1 1 0 2 1 1 0 1 1 0 0 1 0 0 0 0 0 3 0 0 15 0 1657.8788 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27;A0A494C163;A0A494C099;D6RCQ8;D6RF77;D6RIS6 H0Y987 113 127 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.056055 22.533 By MS/MS By matching 1 1 0.98777 0.92504 7.1161 2 Median 0.96674 0.97278 NaN 1 0 Median 1.0093 0.87965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3142800 1220800 1922000 2293700 843500 1450200 849050 377270 471780 0 0 0 0 0 0 0 0 0 0 0 0 5941 1165 6188 30208;30209 30369 30369 1 EAVQLVNTR LHLLTQEALSIHGVKEAVQLVNTREEVEDL SIHGVKEAVQLVNTREEVEDLCRLDKMIDL K E A T R E 1 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1028.5615 P54886 P54886 531 539 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 1.1665E-25 166.52 By MS/MS By MS/MS By MS/MS 1 2 1 2.2299 1.9239 113.49 4 Linear NaN NaN NaN 0 0 Median 1.1 0.95113 NaN 1 1 Median 0.32419 0.33488 176.7 2 2 Median 0.63464 0.54697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83859000 53333000 30526000 0 0 0 17248000 8451600 8796200 57557000 38974000 18583000 9054300 5907900 3146400 0 0 0 0 0 0 5942 2488 6189 30210;30211;30212;30213 30370;30371;30372;30373 30372 4 EAVTEILGIEPDR AAFVVYLETETLVTREAVTEILGIEPDREK TREAVTEILGIEPDREKGFHLDVEDYLSGV R E A D R E 1 1 0 1 0 0 3 1 0 2 1 0 0 0 1 0 1 0 0 1 0 0 13 0 1440.746 E9PGT1;Q15631;H7C1D4 E9PGT1 112 124 TSN Translin yes no 2 0.00238 65.5 By MS/MS 1 1.1477 0.97265 NaN 1 Median NaN NaN NaN 0 0 Median 1.1477 0.97265 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2705200 1290000 1415200 0 0 0 2705200 1290000 1415200 0 0 0 0 0 0 0 0 0 0 0 0 5943 925 6190 30214 30374;30375 30375 2 EAVTEILGIEPDREK AAFVVYLETETLVTREAVTEILGIEPDREK EAVTEILGIEPDREKGFHLDVEDYLSGVLI R E A E K G 1 1 0 1 0 0 4 1 0 2 1 1 0 0 1 0 1 0 0 1 0 0 15 1 1697.8836 E9PGT1;Q15631;H7C1D4 E9PGT1 112 126 TSN Translin yes no 2;3 4.305E-13 174.24 By MS/MS By MS/MS 2 3 0.97002 0.95971 6.4305 5 Median 0.88715 0.92411 3.6755 2 0 Median 1.1365 1.0523 5.4972 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69110000 35636000 33474000 64321000 33533000 30788000 4789100 2102600 2686500 0 0 0 0 0 0 0 0 0 0 0 0 5944 925 6191 30215;30216;30217;30218;30219 30376;30377;30378;30379;30380 30378 5 EAVTFDQANPTQILGK RSAASKTMNIYFPKKEAVTFDQANPTQILG AVTFDQANPTQILGKLKELNGTAPEEKKLT K E A G K L 2 0 1 1 0 2 1 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 16 0 1730.8839 Q9Y263;E5RIM3;H0YC16 Q9Y263 539 554 PLAA Phospholipase A-2-activating protein yes no 2 0.00013453 55.452 By MS/MS By matching 2 2 0.86338 0.83979 8.3682 4 Median 0.83555 0.83979 5.8278 2 0 Median 0.92762 0.8343 13.255 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9836700 5688500 4148200 9381100 5461700 3919400 455550 226810 228740 0 0 0 0 0 0 0 0 0 0 0 0 5945 4374 6192 30220;30221;30222;30223 30381 30381 1 EAVTFLR MYVALTYDHRLIDGREAVTFLRKIKAAVED DHRLIDGREAVTFLRKIKAAVEDPRVLLLD R E A L R K 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 834.45995 P36957 P36957 431 437 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 0.014081 86.866 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.4969 1.3966 33.016 4 Median 0.92744 0.91586 NaN 1 0 Median 1.6645 1.4435 NaN 1 0 Median 1.3462 1.3512 NaN 1 0 Median 2.3598 2.0497 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14010000 6161900 7848300 4386200 2573200 1813000 1658700 664220 994470 3897100 1774300 2122700 4068300 1150200 2918100 0 0 0 0 0 0 5946 2265 6193 30224;30225;30226;30227 30382;30383;30384 30384 3 EAVTHIGR KGDKIAIWTTECENREAVTHIGRVYKERLG TTECENREAVTHIGRVYKERLGLPPKIVIG R E A G R V 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 8 0 881.47191 D6RBW1;P06730 D6RBW1 202 209 EIF4E Eukaryotic translation initiation factor 4E yes no 2 0.015483 50.127 By MS/MS By MS/MS By matching 1 2 2 1.3154 1.2339 31.982 5 Median 1.3154 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9792 0.98351 35.016 2 0 Median NaN NaN NaN 0 0 Median 1.1894 1.217 47.914 2 0 Median NaN NaN NaN 0 0 Median 1969300 892370 1076900 741250 330490 410760 0 0 0 904260 395430 508840 0 0 0 323810 166450 157360 0 0 0 5947 818 6194 30228;30229;30230;30231;30232 30385;30386 30385 2 EAVVNTQELLDLLVK NKWNTALIGLMTYFREAVVNTQELLDLLVK EAVVNTQELLDLLVKCENKIQTRIKIGLNS R E A V K C 1 0 1 1 0 1 2 0 0 0 4 1 0 0 0 0 1 0 0 3 0 0 15 0 1682.9455 Q6P2Q9 Q6P2Q9 1276 1290 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 1.4799E-09 115.83 By MS/MS By matching By matching By matching By matching 3 1 1 1 1 1.2353 1.0767 7.7089 7 Median NaN NaN NaN 0 0 Median 1.332 1.1803 5.7883 3 0 Plateau 0.94173 1.0486 NaN 1 0 Median 1.2955 1.1701 NaN 1 0 Median 1.014 1.0412 NaN 1 0 Median 1.4565 1.275 NaN 1 0 Median 20612000 8998100 11614000 0 0 0 17063000 7290800 9772500 2224600 1100200 1124400 477930 194830 283100 754090 371750 382350 92519 40521 51998 5948 3157 6195 30233;30234;30235;30236;30237;30238;30239 30387;30388;30389 30387 3 EAVVYLAHTHDGAR YAPPKLRSEMIEAIREAVVYLAHTHDGARV REAVVYLAHTHDGARVAMHCLWHGTPKDRK R E A A R V 3 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 1 0 1 2 0 0 14 0 1537.7637 Q15397 Q15397 353 366 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 4.089E-06 86.467 By matching By matching By MS/MS By MS/MS 2 1 3 2 0.99606 1.017 11.597 5 Median 1.0835 1.0808 8.6143 2 0 Median 0.85887 0.97739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8578 0.86824 NaN 1 0 Median 1.3208 1.138 NaN 1 0 Median 29206000 13556000 15649000 6923900 2947600 3976300 2958100 1567900 1390200 0 0 0 0 0 0 16968000 7864200 9104000 2355300 1176600 1178700 5949 2947 6196 30240;30241;30242;30243;30244;30245;30246;30247 30390;30391;30392;30393;30394;30395 30391 6 EAYEAGLIGK GEFYNEASNLQVAIREAYEAGLIGKNACGS QVAIREAYEAGLIGKNACGSGYDFDVFVVR R E A G K N 2 0 0 0 0 0 2 2 0 1 1 1 0 0 0 0 0 0 1 0 0 0 10 0 1049.5393 G3V0I5;P49821;E9PQP1;E9PMX3;B4DE93;E9PJL9;H0YE81;E9PLC6 G3V0I5 168 177 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 2 0.012479 57.047 By MS/MS 1 0.84708 0.7937 NaN 1 Median 0.84708 0.7937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7155700 3444100 3711600 7155700 3444100 3711600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5950 1100 6197 30248 30396 30396 1 EAYEQLLQTENLSAQVK IAHLYETQRKYHSAKEAYEQLLQTENLSAQ YEQLLQTENLSAQVKATVLQQLGWMHHTVD K E A V K A 2 0 1 0 0 3 3 0 0 0 3 1 0 0 0 1 1 0 1 1 0 0 17 0 1962.9898 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6 O15550 226 242 KDM6A Lysine-specific demethylase 6A yes no 2 2.4084E-05 59.57 By MS/MS By matching 1 1 0.99602 0.98536 5.5047 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87393 0.94774 NaN 1 0 Median 1.1352 1.0245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5105500 2960300 2145200 0 0 0 0 0 0 4959100 2906400 2052700 146420 53891 92526 0 0 0 0 0 0 5951 111 6198 30249;30250 30397;30398 30398 2 EAYFWLR SYNHDGTRNILDDFREAYFWLRQNTDEHAR RNILDDFREAYFWLRQNTDEHARVMSWWDY R E A L R Q 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 7 0 983.4865 Q8TCJ2 Q8TCJ2 586 592 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 0.016999 66.994 By matching By MS/MS By matching 1 1 3 1.273 1.2144 10.104 5 Median NaN NaN NaN 0 0 Median 1.273 1.0718 NaN 1 0 Median 1.1261 1.2302 NaN 1 0 Median 1.4003 1.2144 12.115 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5804700 2603200 3201600 0 0 0 1986200 828830 1157400 3357800 1577100 1780700 460760 197250 263510 0 0 0 0 0 0 5952 3466 6199 30251;30252;30253;30254;30255 30399;30400 30399 2 EAYGAVTQTVR LVSDTRRVSDIQWFREAYGAVTQTVRVVAL QWFREAYGAVTQTVRVVALEQSRQQRGWVF R E A V R V 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 2 0 1 2 0 0 11 0 1193.6041 Q15126 Q15126 120 130 PMVK Phosphomevalonate kinase yes yes 2 0.00013559 99.815 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1.2886 1.143 36.277 6 Median 0.95829 0.93385 21.03 2 0 Median 1.4537 1.2056 NaN 1 0 Median 1.9695 1.8732 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2461 1.2907 52.967 2 0 Median NaN NaN NaN 0 0 Median 34957000 16645000 18313000 16484000 7709100 8775000 5961400 2467800 3493700 3136300 1282500 1853800 0 0 0 9375600 5185500 4190100 0 0 0 5953 2931 6200 30256;30257;30258;30259;30260;30261 30401;30402;30403;30404;30405 30404 5 EAYHAVVLSYGAEDHR GNVEVGRDVTVPELREAYHAVVLSYGAEDH AYHAVVLSYGAEDHRALEIPGEELPGVCSA R E A H R A 3 1 0 1 0 0 2 1 2 0 1 0 0 0 0 1 0 0 2 2 0 0 16 0 1815.854 P22570 P22570 124 139 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes yes 3;4 2.3759E-10 126.77 By MS/MS By MS/MS 2 3 1.9107 1.6454 36.28 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97328 0.94942 0.58325 2 0 Median 2.1344 1.8333 9.6975 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141700000 55056000 86642000 0 0 0 0 0 0 61661000 31382000 30279000 80037000 23674000 56363000 0 0 0 0 0 0 5954 2102 6201 30262;30263;30264;30265;30266 30406;30407;30408;30409;30410;30411;30412;30413 30407 8 EAYMGNVLQGGEGQAPTR QGAIEKAGIPKEEVKEAYMGNVLQGGEGQA MGNVLQGGEGQAPTRQAVLGAGLPISTPCT K E A T R Q 2 1 1 0 0 2 2 4 0 0 1 0 1 0 1 0 1 0 1 1 0 0 18 0 1876.8738 P24752;H0YEL7;E9PRQ6 P24752 88 105 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2;3 3.1598E-19 176.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 1 0.82846 0.90666 38.68 14 Median 0.79824 0.80113 3.7535 3 0 Plateau 1.225 1.0656 14.398 3 0 Median 0.82846 0.91183 4.5569 4 1 Median 1.2476 1.0539 85.923 3 0 Median 0.75126 0.8045 NaN 1 0 Median NaN NaN NaN 0 0 Median 379970000 198860000 181110000 69079000 36453000 32627000 7731800 3558400 4173500 283900000 150530000 133370000 16417000 6963100 9454100 2839800 1350700 1489100 0 0 0 5955 2126 6202;6203 30267;30268;30269;30270;30271;30272;30273;30274;30275;30276;30277;30278;30279;30280 30414;30415;30416;30417;30418;30419;30420;30421;30422;30423;30424;30425;30426;30427;30428;30429;30430;30431 30422 889 18 EAYPDHTQFEK NCKEPGIAGLMKIVKEAYPDHTQFEKNNPH KIVKEAYPDHTQFEKNNPHYDPSSKEDNPK K E A E K N 1 0 0 1 0 1 2 0 1 0 0 1 0 1 1 0 1 0 1 0 0 0 11 0 1363.6044 Q9P016 Q9P016 132 142 THYN1 Thymocyte nuclear protein 1 yes yes 3 4.9332E-05 77.744 By MS/MS By MS/MS 1 2 1.0071 0.83414 21.305 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7123 0.67028 NaN 1 0 Median 1.1041 0.92526 14.662 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11016000 6210000 4805700 0 0 0 0 0 0 6653800 4019800 2634000 4361900 2190200 2171700 0 0 0 0 0 0 5956 4198 6204 30281;30282;30283 30432;30433;30434;30435 30433 4 EAYPEEAYIADLDAK KVKWGDIEFPPPFGREAYPEEAYIADLDAK EAYPEEAYIADLDAKSGASLKLTLLNPKGR R E A A K S 4 0 0 2 0 0 3 0 0 1 1 1 0 0 1 0 0 0 2 0 0 0 15 0 1696.7832 P53396 P53396 245 259 ACLY ATP-citrate synthase yes yes 2 4.1727E-05 84.169 By MS/MS By matching 1 1 1.0025 0.91541 9.1787 2 Median 1.0086 0.97679 NaN 1 0 Median 0.99639 0.85788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10835000 4867300 5967800 10100000 4486400 5613700 735040 380950 354090 0 0 0 0 0 0 0 0 0 0 0 0 5957 2467 6205 30284;30285 30436;30437 30437 2 EAYPGDVFYLHSR AYRQMSLLLRRPPGREAYPGDVFYLHSRLL GREAYPGDVFYLHSRLLERAAKMNDAFGGG R E A S R L 1 1 0 1 0 0 1 1 1 0 1 0 0 1 1 1 0 0 2 1 0 0 13 0 1552.731 P25705 P25705 335 347 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2;3 4.4454E-07 129.16 By MS/MS By matching By MS/MS By matching By matching By matching 4 2 3 1 1 2 1.1085 1.0469 22.146 13 Median 1.009 0.97805 17.768 4 0 Median 1.2138 1.0243 3.08 2 0 Median 0.67101 0.67602 33.967 3 1 Median 1.3405 1.1697 NaN 1 0 Median 1.1085 1.1153 NaN 1 0 Median 1.2129 1.0518 8.5151 2 0 Median 150450000 75755000 74697000 118530000 60504000 58028000 16853000 7409000 9443800 11556000 6208800 5346900 401310 145180 256130 2076600 1072900 1003700 1033000 414410 618580 5958 2135 6206 30286;30287;30288;30289;30290;30291;30292;30293;30294;30295;30296;30297;30298 30438;30439;30440;30441;30442;30443;30444;30445;30446;30447 30438 10 EAYVNANQAR TFYCVPVPGESTWVKEAYVNANQARVSPST STWVKEAYVNANQARVSPSTSYTPSRHKRS K E A A R V 3 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1134.5418 Q9BTE3 Q9BTE3 143 152 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.0068251 62.88 By MS/MS 1 1.0116 0.87824 NaN 1 Median NaN NaN NaN 0 0 Median 1.0116 0.87824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3377600 1543800 1833800 0 0 0 3377600 1543800 1833800 0 0 0 0 0 0 0 0 0 0 0 0 5959 3825 6207 30299 30448 30448 1 EAYYWLR ARGGDGSRIIFDDFREAYYWLRHNTPEDAK RIIFDDFREAYYWLRHNTPEDAKVMSWWDY R E A L R H 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 7 0 999.48142 P46977 P46977 507 513 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.0068426 91.584 By MS/MS By MS/MS By MS/MS 2 3 2 1.2803 1.0892 22.824 7 Median 1.0854 1.0481 5.4468 2 0 Median 1.2822 1.0754 27.394 3 0 Median 1.3847 1.5204 14.104 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52072000 23440000 28632000 22403000 10546000 11858000 24607000 10942000 13665000 5060900 1952100 3108800 0 0 0 0 0 0 0 0 0 5960 2352 6208 30300;30301;30302;30303;30304;30305;30306 30449;30450;30451;30452;30453;30454;30455;30456 30450 8 ECADLWPR KGEMKGSAITGPVAKECADLWPRIASNAGS ITGPVAKECADLWPRIASNAGSIA______ K E C P R I 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 0 1045.4651 P62829;J3KTJ3 P62829 124 131 RPL23 60S ribosomal protein L23 yes no 2 0.012659 54.549 By matching By MS/MS By matching 1 1 1 0.9737 0.93641 5.8592 3 Median 0.9737 0.97215 NaN 1 0 Median 1.0444 0.86664 NaN 1 0 Median 0.92555 0.93641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7424900 3624000 3800900 1698400 943290 755080 3079300 1411800 1667500 2647300 1269000 1378300 0 0 0 0 0 0 0 0 0 5961 2598 6209 30307;30308;30309 30457;30458;30459;30460 30458 4 EDAANNYAR TYRQLFHPEQLITGKEDAANNYARGHYTIG QLITGKEDAANNYARGHYTIGKEIIDLVLD K E D A R G 3 1 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1022.4417 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;A6NHL2;F8VX09;F8VWV9;C9JJQ8;C9JEV8;C9JQ00;C9JDL2;C9K0S6;P68363;P68366;Q71U36;P0DPH8;P0DPH7;F8VQQ4 P68363 97 105 TUBA1C;TUBA1B;TUBA1A;TUBAL3;TUBA4A;TUBA8 Tubulin alpha-1C chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2 1.9641E-10 170.06 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0564 0.97467 7.3346 4 Median 1.0044 1.0021 NaN 1 0 Median 1.1263 0.94802 NaN 1 0 Median 1.0752 1.0828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.038 0.91508 NaN 1 0 Median 14760000 6886700 7873200 2913300 1361900 1551400 9819600 4578800 5240800 1912800 886720 1026100 0 0 0 0 0 0 114130 59219 54911 5962 2633;3212;1034 6210 30310;30311;30312;30313 30461;30462;30463;30464;30465;30466;30467 30467 7 EDAGGMIQR ESVASCLPPLVPAIKEDAGGMIQRLMQQLL LVPAIKEDAGGMIQRLMQQLLESDKYAERK K E D Q R L 1 1 0 1 0 1 1 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 975.44438 Q92616 Q92616 1372 1380 GCN1L1 Translational activator GCN1 yes yes 2 0.0031588 67.032 By MS/MS 1 1.1193 0.94918 NaN 1 Median NaN NaN NaN 0 0 Median 1.1193 0.94918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 916870 420890 495980 0 0 0 916870 420890 495980 0 0 0 0 0 0 0 0 0 0 0 0 5963 3544 6211 30314 30468;30469 30468 2 EDAIEHFMK GTVIGSNKLEQMPSKEDAIEHFMKLYEEKT EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF K E D M K L 1 0 0 1 0 0 2 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1118.5066 P09874 P09874 608 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00029932 137.9 By matching By matching By MS/MS By MS/MS By matching 1 1 3 4 1 1.2245 1.1012 17.198 10 Median 0.97283 0.97184 NaN 1 0 Median 1.202 1.0338 NaN 1 0 Median 1.1046 1.1798 11.708 3 0 Median 1.3075 1.1339 23.102 4 0 Median NaN NaN NaN 0 0 Median 1.2506 1.0442 NaN 1 0 Median 46635000 21941000 24694000 1949800 880520 1069300 783260 295360 487900 26327000 12726000 13602000 17012000 7759300 9252400 0 0 0 562700 280110 282590 5964 1922 6212;6213 30315;30316;30317;30318;30319;30320;30321;30322;30323;30324 30470;30471;30472;30473;30474;30475 30473 698 6 EDALAFNSAISLPGPR KEAQKKPAESQKIEREDALAFNSAISLPGP DALAFNSAISLPGPRKPLVPLDYPMDGSFE R E D P R K 3 1 1 1 0 0 1 1 0 1 2 0 0 1 2 2 0 0 0 0 0 0 16 0 1656.8471 P20248 P20248 123 138 CCNA2 Cyclin-A2 yes yes 2 0.0050678 53.967 By MS/MS 1 0.36645 0.36776 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36645 0.36776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4515300 3113300 1402000 0 0 0 0 0 0 4515300 3113300 1402000 0 0 0 0 0 0 0 0 0 5965 2075 6214 30325 30476 30476 0 EDALNLSVPR ISGSEDITTSPQLSKEDALNLSVPRQRRRR PQLSKEDALNLSVPRQRRRRRRKIEIEAER K E D P R Q 1 1 1 1 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 10 0 1112.5826 Q9P2D1 Q9P2D1 2389 2398 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.039553 64.711 By MS/MS 1 0.70058 0.74705 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70058 0.74705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6441300 3830500 2610700 0 0 0 0 0 0 6441300 3830500 2610700 0 0 0 0 0 0 0 0 0 5966 4220 6215 30326 30477 30477 0 EDAMAMVDHCLKK LMRMKSQAFIEMETREDAMAMVDHCLKKAL TREDAMAMVDHCLKKALWFQGRCVKVDLSE R E D K K A 2 0 0 2 1 0 1 0 1 0 1 2 2 0 0 0 0 0 0 1 0 0 13 1 1546.6942 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 543 555 MATR3 Matrin-3 yes no 3 0.032784 17.744 By MS/MS By matching 1 1 1.4432 1.461 1.4157 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3175 1.4757 NaN 1 0 Median 1.5809 1.4464 NaN 1 0 Median 7186400 3452400 3734000 0 0 0 0 0 0 0 0 0 0 0 0 7060900 3408600 3652400 125470 43814 81657 5967 297 6216 30327;30328 30478 30478 1 EDAPIGPHLQSMPSEQIR SRTLSFGSDLNYATREDAPIGPHLQSMPSE PIGPHLQSMPSEQIRNQLTAMSSVLAKALE R E D I R N 1 1 0 1 0 2 2 1 1 2 1 0 1 0 3 2 0 0 0 0 0 0 18 0 2003.9735 Q14152 Q14152 503 520 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 1.7476E-19 120.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 1 0.71474 0.64194 15.937 14 Median 0.62827 0.58914 12.574 5 0 Median 0.74075 0.62998 17.525 4 0 Median 0.64847 0.7124 3.8149 2 1 Median 0.79243 0.6966 5.441 2 0 Median 0.77334 0.81162 NaN 1 0 Median NaN NaN NaN 0 0 Median 348230000 204420000 143810000 249280000 147200000 102080000 61422000 34464000 26958000 27031000 16887000 10144000 6517400 3606100 2911300 3982700 2263500 1719200 0 0 0 5968 2860 6217;6218 30329;30330;30331;30332;30333;30334;30335;30336;30337;30338;30339;30340;30341;30342 30479;30480;30481;30482;30483;30484;30485;30486;30487;30488;30489;30490;30491;30492;30493;30494;30495 30488 1537 17 EDAQEIADTPSGDK TGHREEGGENLDQAREDAQEIADTPSGDKT REDAQEIADTPSGDKTSLETRFMTILCTRS R E D D K T 2 0 0 3 0 1 2 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 14 0 1474.6423 E5RK69 E5RK69 314 327 ANXA6 Annexin yes yes 2 8.9438E-06 91.313 By MS/MS 1 1.0246 0.87618 NaN 1 Median NaN NaN NaN 0 0 Median 1.0246 0.87618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3883900 2014900 1869000 0 0 0 3883900 2014900 1869000 0 0 0 0 0 0 0 0 0 0 0 0 5969 854 6219 30343 30496;30497 30496 2 EDAQEIADTPSGDKTSLETR TGHREEGGENLDQAREDAQEIADTPSGDKT IADTPSGDKTSLETRFMTILCTRSYPHLRR R E D T R F 2 1 0 3 0 1 3 1 0 1 1 1 0 0 1 2 3 0 0 0 0 0 20 1 2161.9975 E5RK69 E5RK69 314 333 ANXA6 Annexin yes yes 3 5.2066E-11 94.958 By MS/MS By matching 1 1 1.0766 1.0311 16.501 2 Median 0.91545 0.91758 NaN 1 0 Median 1.2662 1.1587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21183000 10040000 11143000 16753000 8360400 8392100 4430700 1679300 2751300 0 0 0 0 0 0 0 0 0 0 0 0 5970 854 6220 30344;30345 30498;30499 30498 2 EDAQVAAEILEIADTPSGDK TGHREEGGENLDQAREDAQVAAEILEIADT AAEILEIADTPSGDKTSLETRFMTILCTRS R E D D K T 4 0 0 3 0 1 3 1 0 2 1 1 0 0 1 1 1 0 0 1 0 0 20 0 2070.9957 P08133;E7EMC6 P08133 521 540 ANXA6 Annexin A6;Annexin yes no 2 0.042303 20.106 By matching By MS/MS 1 1 1.7721 1.6372 73.578 2 Median 2.7874 2.7545 NaN 1 0 Median 1.1267 0.97307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2021100 842390 1178700 524210 201790 322430 1496900 640600 856270 0 0 0 0 0 0 0 0 0 0 0 0 5971 1898 6221 30346;30347 30500;30501 30500 2 EDAQVAAEILEIADTPSGDKTSLETR TGHREEGGENLDQAREDAQVAAEILEIADT IADTPSGDKTSLETRFMTILCTRSYPHLRR R E D T R F 4 1 0 3 0 1 4 1 0 2 2 1 0 0 1 2 3 0 0 1 0 0 26 1 2758.3509 P08133;E7EMC6 P08133 521 546 ANXA6 Annexin A6;Annexin yes no 3 2.5469E-05 34.125 By MS/MS By matching 1 1 0.93993 0.91653 17.186 2 Median 0.79126 0.81165 NaN 1 0 Median 1.1165 1.035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6006300 2891400 3114900 5409100 2618800 2790400 597160 272650 324510 0 0 0 0 0 0 0 0 0 0 0 0 5972 1898 6222 30348;30349 30502;30503 30503 2 EDAVLEYLK ERIQVWHEEHRGMLREDAVLEYLKIAQDLE HRGMLREDAVLEYLKIAQDLEMYGVNYFSI R E D L K I 1 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1078.5546 P26038 P26038 185 193 MSN Moesin yes yes 2 0.0035603 64.265 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1.1268 0.98831 4.3989 6 Median 1.0003 0.90901 NaN 1 0 Median 1.1476 0.98366 0.23292 2 0 Median 0.99763 1.002 NaN 1 0 Median 1.1744 1.0151 3.3482 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49952000 22957000 26994000 10946000 5157800 5787900 19247000 8779900 10467000 16702000 7649200 9053100 3056900 1370500 1686400 0 0 0 0 0 0 5973 2139 6223 30350;30351;30352;30353;30354;30355 30504;30505;30506;30507 30505 4 EDAVSFAEK TADPLSNMVLTFSTKEDAVSFAEKNGWSYD LTFSTKEDAVSFAEKNGWSYDIEERKVPKP K E D E K N 2 0 0 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 994.46074 O43181 O43181 132 140 NDUFS4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial yes yes 2 0.015224 43.769 By MS/MS By MS/MS 1 1 1.1081 1.0041 55.901 2 Median 0.71792 0.67624 NaN 1 0 Median 1.7102 1.4908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1736700 811300 925380 925290 481120 444170 811390 330180 481210 0 0 0 0 0 0 0 0 0 0 0 0 5974 1558 6224 30356;30357 30508;30509 30508 2 EDDRVAIHEAMEQQTISIAK ADGGVVCIDEFDKMREDDRVAIHEAMEQQT AIHEAMEQQTISIAKAGITTTLNSRCSVLA R E D A K A 3 1 0 2 0 2 3 0 1 3 0 1 1 0 0 1 1 0 0 1 0 0 20 1 2283.1165 P33992;B1AHB1 P33992 452 471 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.00023009 47.047 By MS/MS 1 0.83159 0.85359 NaN 1 Median 0.83159 0.85359 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7974900 4767600 3207200 7974900 4767600 3207200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5975 2224 6225 30358 30510 30510 1 EDDVGTGAGLLEIK RACGARIVSRPEELREDDVGTGAGLLEIKK REDDVGTGAGLLEIKKIGDEYFTFITDCKD R E D I K K 1 0 0 2 0 0 2 3 0 1 2 1 0 0 0 0 1 0 0 1 0 0 14 0 1415.7144 P49368;B4DUR8 P49368 340 353 CCT3 T-complex protein 1 subunit gamma yes no 2;3 0.0017946 59.908 By MS/MS By MS/MS 3 1 0.040678 0.033914 279.81 3 Median 0.070615 0.066467 391.88 2 2 Median 0.040678 0.033914 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141480000 137960000 3514700 114350000 111680000 2670000 27130000 26285000 844630 0 0 0 0 0 0 0 0 0 0 0 0 5976 2379 6226 30359;30360;30361;30362 30511;30512;30513;30514;30515;30516 30513 6 EDEEEDDDVVAPKPPIEPEEEK TYTKETQTPVMAQPKEDEEEDDDVVAPKPP DVVAPKPPIEPEEEKTLKKDEENDSKAPPH K E D E K T 1 0 0 4 0 0 8 0 0 1 0 2 0 0 4 0 0 0 0 2 0 0 22 1 2537.1181 Q13409 Q13409 170 191 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 3 0.069076 7.5332 By matching By MS/MS 1 1 0.57221 0.55595 12.851 2 Median NaN NaN NaN 0 0 Median 0.52537 0.50765 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62323 0.60883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1827000 1124400 702630 0 0 0 952450 614180 338260 0 0 0 874560 510190 364370 0 0 0 0 0 0 5977 2811 6227 30363;30364 30517 30517 1 EDEIPETVSLEMLDAAK DWQKKILIWSGRFKKEDEIPETVSLEMLDA EIPETVSLEMLDAAKNKMRVKISYLMIALT K E D A K N 2 0 0 2 0 0 4 0 0 1 2 1 1 0 1 1 1 0 0 1 0 0 17 0 1888.8976 Q96A26;F8W7Q4;E9PH05 Q96A26 80 96 FAM162A Protein FAM162A yes no 2 0.033865 23.376 By matching By MS/MS 1 2 0.8296 0.83174 20.457 3 Median NaN NaN NaN 0 0 Median 1.3759 1.1854 NaN 1 0 Median 0.8296 0.83174 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3297700 1698000 1599700 0 0 0 95315 58284 37031 3202400 1639700 1562700 0 0 0 0 0 0 0 0 0 5978 1085 6228 30365;30366;30367 30518 30518 1 EDEKGDDVDDPENQNSALADTDASGGLTK ALLAERIEKSLVEPKEDEKGDDVDDPENQN NSALADTDASGGLTKESPDTNGPKQKEKED K E D T K E 3 0 2 7 0 1 3 3 0 0 2 2 0 0 1 2 2 0 0 1 0 0 29 1 3005.2858 Q02952 Q02952 1697 1725 AKAP12 A-kinase anchor protein 12 yes yes 3 3.0691E-05 31.37 By MS/MS 2 0.8866 0.8529 23.49 2 Median NaN NaN NaN 0 0 Median 0.8866 0.8529 23.49 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8425700 4559800 3865900 0 0 0 8425700 4559800 3865900 0 0 0 0 0 0 0 0 0 0 0 0 5979 2705 6229 30368;30369 30519 30519 1 EDENSWFNLFVIHQNR YRMFVNKKVTMLRPKEDENSWFNLFVIHQN DENSWFNLFVIHQNRSKHGSTNFIPEQFLD K E D N R S 0 1 3 1 0 1 2 0 1 1 1 0 0 2 0 1 0 1 0 1 0 0 16 0 2046.9548 P49959;F8W7U8;F5GXT0 P49959 205 220 MRE11A Double-strand break repair protein MRE11A yes no 3 0.022946 17.917 By matching By matching By MS/MS By matching By matching 1 2 1 1 1 1.0428 1.0588 38.349 6 Median 1.0481 1.0167 NaN 1 0 Median 0.57849 0.54887 30.737 2 0 Median 1.0545 1.1163 NaN 1 0 Median 1.3954 1.1418 NaN 1 0 Median 1.0375 1.1027 NaN 1 0 Median NaN NaN NaN 0 0 Median 2816500 1671200 1145300 340810 184390 156420 979880 669990 309890 623530 326410 297110 48996 23334 25662 823260 467040 356220 0 0 0 5980 2407 6230 30370;30371;30372;30373;30374;30375 30520;30521 30521 2 EDEQQQALQDIASR QEVDEFLLRLSKLTKEDEQQQALQDIASRC KEDEQQQALQDIASRCTANDLKCIIRLIKH K E D S R C 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1629.7594 P49916;K7ERZ5;K7EQB6 P49916 390 403 LIG3 DNA ligase 3 yes no 2 1.0629E-05 103.34 By MS/MS By MS/MS 2 1 1.1363 1.0156 15.988 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9681 1.0261 22.594 2 2 Median 1.1943 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36207000 14322000 21885000 0 0 0 0 0 0 32972000 12935000 20038000 3234600 1387600 1847000 0 0 0 0 0 0 5981 2406 6231 30376;30377;30378 30522;30523;30524;30525 30523 4 EDEVEEWQHR YTAKIALLEEARRRKEDEVEEWQHRAKEAQ ARRRKEDEVEEWQHRAKEAQDDLVKTKEEL K E D H R A 0 1 0 1 0 1 4 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 10 0 1355.5742 P15311;E7EQR4 P15311 439 448 EZR Ezrin yes no 3 9.4812E-05 84.213 By MS/MS 1 1.1278 0.97183 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1278 0.97183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2699200 1173200 1526000 0 0 0 0 0 0 0 0 0 2699200 1173200 1526000 0 0 0 0 0 0 5982 879 6232 30379 30526;30527 30526 2 EDFPQKWPDLLTEMVNR QIQKQLSDAISIIGREDFPQKWPDLLTEMV FPQKWPDLLTEMVNRFQSGDFHVINGVLRT R E D N R F 0 1 1 2 0 1 2 0 0 0 2 1 1 1 2 0 1 1 0 1 0 0 17 1 2117.0252 P55060 P55060 121 137 CSE1L Exportin-2 yes yes 3 0.065236 9.7575 By MS/MS By matching 1 1 0.93894 0.95621 2.7082 2 Median 0.90615 0.93807 NaN 1 0 Median 0.97292 0.9747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3025400 1444800 1580500 1579500 712490 867060 1445800 732350 713450 0 0 0 0 0 0 0 0 0 0 0 0 5983 2493 6233 30380;30381 30528 30528 1 EDFPWSGK GASNEYDSSPAAWNKEDFPWSGKVKDILQN SPAAWNKEDFPWSGKVKDILQNVFKLEKFR K E D G K V 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 8 0 964.42905 P46063;F8WA66;F8WD97;F5H2L2;F5H4P4;F5H3W0 P46063 71 78 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.0080329 64.567 By MS/MS By matching 1 2 0.98236 0.86073 3.9991 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81444 0.86054 NaN 1 0 Median 1.0293 0.89101 4.8897 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6465300 3501700 2963600 0 0 0 0 0 0 4926900 2767100 2159800 1538400 734610 803820 0 0 0 0 0 0 5984 2337 6234 30382;30383;30384 30529;30530 30529 2 EDFVLSITGK RLLAKLRKDIRPECREDFVLSITGKKAPGC RPECREDFVLSITGKKAPGCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 10 0 1107.5812 A0A286YEX4;P08651 A0A286YEX4 112 121 NFIC Nuclear factor 1 C-type yes no 2 0.04531 29.473 By MS/MS 1 1.2022 1.2368 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2022 1.2368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2683700 1233700 1450000 0 0 0 0 0 0 2683700 1233700 1450000 0 0 0 0 0 0 0 0 0 5985 350 6235 30385 30531 30531 1 EDFVLTVTGK RLLAKLRKDIRPEYREDFVLTVTGKKPPCC RPEYREDFVLTVTGKKPPCCVLSNPDQKGK R E D G K K 0 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 10 0 1107.5812 A0A590UJ82;A0A590UK73;B1AKN6;B1AKN7;B1AKN5;A0A590UK09;B1AKN8;Q12857;S4R3K4;U3KPY9;A0A087WXP2;Q5W0Y9 A0A590UJ82 89 98 NFIA;NFIB Nuclear factor 1;Nuclear factor 1 A-type no no 2 0.0011606 67.993 By MS/MS By matching By matching 4 2 1 1.2022 1.2368 20.428 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2295 1.2817 26.23 4 0 Median 1.1647 1.0129 0.93075 2 0 Median 1.2313 1.2951 NaN 1 0 Median NaN NaN NaN 0 0 Median 9681800 4976300 4705600 0 0 0 0 0 0 7972000 4169900 3802100 329170 145110 184060 1380700 661300 719400 0 0 0 5986 483 6236 30386;30387;30388;30389;30390;30391;30392 30532;30533 30532 2 EDGAISTIVLR SEVGDTQVVVFKHEKEDGAISTIVLRGSTD KHEKEDGAISTIVLRGSTDNLMDDIERAVD K E D L R G 1 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1172.6401 P50990 P50990 368 378 CCT8 T-complex protein 1 subunit theta yes yes 2 0.00026466 73.233 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0495 0.90163 36.275 6 Median 0.7031 0.66925 57.714 2 1 Median 1.0569 0.90163 0.54191 2 0 Median 1.219 1.2263 NaN 1 0 Median 0.72773 0.638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54271000 30400000 23871000 26585000 17584000 9000600 17564000 8690800 8873200 9862500 4005300 5857200 259410 119630 139780 0 0 0 0 0 0 5987 2423 6237 30393;30394;30395;30396;30397;30398 30534;30535;30536 30535 3 EDGLAQQQTQLNLR SKADEASELACPTPKEDGLAQQQTQLNLRS KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN K E D L R S 1 1 1 1 0 4 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 14 0 1612.8169 P49327;A0A0U1RQF0 P49327 2207 2220 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 3.9605E-56 240.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 8 1 2 1 1.299 1.1557 34.182 16 Median 1.0115 0.95317 47.9 5 0 Median 1.3975 1.1652 13.972 8 0 Median 1.1117 1.2133 NaN 1 0 Median 1.7341 1.5261 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4458 1.2151 NaN 1 0 Median 336460000 151570000 184890000 195920000 95209000 100710000 128070000 50886000 77187000 11016000 4936200 6079300 1208200 441960 766270 0 0 0 240970 97785 143190 5988 2377 6238 30399;30400;30401;30402;30403;30404;30405;30406;30407;30408;30409;30410;30411;30412;30413;30414;30415 30537;30538;30539;30540;30541;30542;30543;30544;30545;30546;30547;30548;30549;30550;30551;30552;30553;30554;30555;30556;30557;30558 30551 22 EDGNEEDKENQGDETQGQQPPQR RPRFRRGPPRQRQPREDGNEEDKENQGDET ENQGDETQGQQPPQRRYRRNFNYRRRRPEN R E D Q R R 0 1 2 3 0 5 5 3 0 0 0 1 0 0 2 0 1 0 0 0 0 0 23 1 2627.0968 P67809;H0Y449 P67809 257 279 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 0.00014378 27.947 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 1 2 1 1 0.72473 0.68544 21.891 8 Median 0.6597 0.66966 NaN 1 0 Median 0.82537 0.76149 24.815 2 0 Median 0.75014 0.76048 NaN 1 0 Median 0.65698 0.60724 10.896 2 0 Median 1.0778 1.1162 NaN 1 0 Median 0.76222 0.70159 NaN 1 0 Median 14284000 8024200 6259800 1251300 669670 581590 9188300 5279500 3908800 683690 385170 298520 1855900 1057900 798010 866470 417310 449160 438400 214640 223760 5989 2627 6239 30416;30417;30418;30419;30420;30421;30422;30423 30559;30560;30561;30562 30559 4 EDGNILGHK DTLVNRIELKGIDFKEDGNILGHKMEYNYN KGIDFKEDGNILGHKMEYNYNSHNVYIMGD K E D H K M 0 0 1 1 0 0 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 981.48796 CON__Q9U6Y5;P37840 P37840 272 280 SNCA Alpha-synuclein no no 2 0.00098548 86.953 By matching By MS/MS By matching 4 4 2 1.1311 1.0165 17.5 10 Median 1.0914 1.0349 17.424 4 0 Median 1.1311 0.96161 6.4737 4 0 Median 1.2961 1.3538 3.3156 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126090000 58057000 68031000 7417100 3503300 3913900 112400000 51924000 60475000 6271800 2629600 3642200 0 0 0 0 0 0 0 0 0 + 5990 2271;795 6240 30424;30425;30426;30427;30428;30429;30430;30431;30432;30433 30563;30564;30565;30566;30567;30568 30565 6 EDGPGIPADIK IIIALIDRLALFAHREDGPGIPADIKLFDI FAHREDGPGIPADIKLFDIFSQQVATVIQS R E D I K L 1 0 0 2 0 0 1 2 0 2 0 1 0 0 2 0 0 0 0 0 0 0 11 0 1110.5557 Q96QK1 Q96QK1 313 323 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.044398 26.889 By MS/MS By matching 1 1 1.0321 0.92455 16.511 2 Median 0.87564 0.82267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2166 1.039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5715800 3066400 2649400 5104600 2677600 2427000 0 0 0 0 0 0 611210 388880 222330 0 0 0 0 0 0 5991 3722 6241 30434;30435 30569 30569 1 EDGQEYAQVIK GKNENESEKRELVFKEDGQEYAQVIKMLGN LVFKEDGQEYAQVIKMLGNGRLEAMCFDGV K E D I K M 1 0 0 1 0 2 2 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1278.6092 P47813;O14602;A6NJH9 P47813 30 40 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 0.0001456 99.802 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.4077 1.202 17.532 5 Median 1.1993 1.13 NaN 1 0 Median 1.6293 1.395 NaN 1 0 Median 1.4077 1.3443 NaN 1 0 Median 1.2499 1.0379 20.764 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48749000 20030000 28719000 19818000 8721500 11097000 10009000 3118800 6890400 15605000 6880300 8724500 3316100 1309300 2006800 0 0 0 0 0 0 5992 2355 6242 30436;30437;30438;30439;30440 30570;30571;30572;30573 30572 4 EDGSEVGVGGAQVTGSNTR GSADLNATFYGPVKKEDGSEVGVGGAQVTG EVGVGGAQVTGSNTRKHILQVSTFQMTILM K E D T R K 1 1 1 1 0 1 2 5 0 0 0 0 0 0 0 2 2 0 0 3 0 0 19 0 1818.8344 Q13618;A0A087WTG3;H7C399 Q13618 570 588 CUL3 Cullin-3 yes no 2 0.00015472 40.552 By MS/MS By matching By MS/MS 1 1 1 1.0649 0.91752 11.857 3 Median NaN NaN NaN 0 0 Median 1.2091 1.0608 NaN 1 0 Median 0.7832 0.83866 NaN 1 0 Median 1.0649 0.91752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5815700 2818100 2997700 0 0 0 1558000 660370 897600 2479100 1259900 1219200 1778700 897860 880870 0 0 0 0 0 0 5993 2831 6243 30441;30442;30443 30574;30575 30575 2 EDGSGDRGDGPFR CDISLQFFLPFSLGKEDGSGDRGDGPFRLG GKEDGSGDRGDGPFRLGGHGPSFPLKGITE K E D F R L 0 2 0 3 0 0 1 4 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 1 1363.5753 P13010 P13010 172 184 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 6.0919E-06 94.688 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 1 0.87538 0.97485 14.67 11 Median 0.87339 0.89549 13.526 2 0 Median 1.1918 1.1792 6.999 2 0 Median 0.81833 0.92923 12.938 4 0 Median 1.0979 0.97287 1.2933 2 0 Median 0.73687 0.80063 NaN 1 0 Median NaN NaN NaN 0 0 Median 37700000 20131000 17569000 8933400 4871500 4062000 3204000 1509600 1694500 16489000 9268400 7220800 8023200 3873300 4149900 1050000 608160 441880 0 0 0 5994 1986 6244 30444;30445;30446;30447;30448;30449;30450;30451;30452;30453;30454 30576;30577;30578;30579;30580;30581;30582;30583;30584;30585;30586;30587;30588;30589;30590;30591;30592;30593;30594;30595;30596;30597;30598;30599;30600;30601 30596 26 EDGTFYEFGEDIPEAPER YSDAIVWLKEHDVKKEDGTFYEFGEDIPEA TFYEFGEDIPEAPERLMTDTINEPILLCRF K E D E R L 1 1 0 2 0 0 5 2 0 1 0 0 0 2 2 0 1 0 1 0 0 0 18 0 2099.896 O43776 O43776 408 425 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 6.9128E-07 85.258 By MS/MS By MS/MS 1 1 0.73834 0.757 6.0814 2 Median 0.7195 0.72514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75767 0.79026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5668500 3118600 2549900 2217800 1284000 933870 0 0 0 3450700 1834700 1616000 0 0 0 0 0 0 0 0 0 5995 1589 6245 30455;30456 30602;30603;30604 30602 3 EDHLMSAMNIK FRAQEIDGQALLLLKEDHLMSAMNIKLGPA LLLKEDHLMSAMNIKLGPALKIYARISMLK K E D I K L 1 0 1 1 0 0 1 0 1 1 1 1 2 0 0 1 0 0 0 0 0 0 11 0 1287.5951 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 831 841 PHC2 Polyhomeotic-like protein 2 no no 3 0.0001715 65.719 By MS/MS 1 1.0165 1.0727 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0165 1.0727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5392500 2798800 2593700 0 0 0 0 0 0 5392500 2798800 2593700 0 0 0 0 0 0 0 0 0 5996 180 6246 30457 30605;30606 30605 2 EDIDAAIETYNLLSER RPQHMLMRVSVGIHKEDIDAAIETYNLLSE DIDAAIETYNLLSERWFTHASPTLFNAGTN K E D E R W 2 1 1 2 0 0 3 0 0 2 2 0 0 0 0 1 1 0 1 0 0 0 16 0 1850.8898 P23921 P23921 181 196 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.014833 42.556 By MS/MS 1 1.3161 1.1405 NaN 1 Median NaN NaN NaN 0 0 Median 1.3161 1.1405 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962900 1205700 1757200 0 0 0 2962900 1205700 1757200 0 0 0 0 0 0 0 0 0 0 0 0 5997 2121 6247 30458 30607 30607 1 EDIDTAMK LMEAIRLYERGDASKEDIDTAMKLGAGYPM ERGDASKEDIDTAMKLGAGYPMGPFELLDY K E D M K L 1 0 0 2 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 8 0 921.41135 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQ78 A0A0D9SFP2 246 253 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.029451 39.646 By MS/MS 1 1.5862 1.3442 NaN 1 Median NaN NaN NaN 0 0 Median 1.5862 1.3442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 931750 327890 603860 0 0 0 931750 327890 603860 0 0 0 0 0 0 0 0 0 0 0 0 5998 269 6248 30459 30608 30608 1 EDIIQGFR TVYCLNDDDETEVLKEDIIQGFRYGSDIVP DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ K E D F R Y 0 1 0 1 0 1 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 P13010 P13010 308 315 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0024311 119.56 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.2308 1.1318 40.834 6 Median 1.079 1.0216 NaN 1 0 Median 1.2751 1.1018 NaN 1 0 Median 1.0732 1.1132 17.829 2 0 Median 1.3491 1.1627 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.371 2.922 NaN 1 0 Median 49809000 22870000 26939000 7554900 3628000 3926900 7060800 3013900 4046900 29010000 13762000 15249000 5763000 2372500 3390500 0 0 0 420180 93820 326360 5999 1986 6249 30460;30461;30462;30463;30464;30465 30609;30610;30611;30612;30613;30614;30615;30616 30610 8 EDILVTLNDLIK TFSECLNLINEGCPKEDILVTLNDLIKNIP CPKEDILVTLNDLIKNIPDAKKLVKYWICL K E D I K N 0 0 1 2 0 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1384.7813 Q8WWK9 Q8WWK9 441 452 CKAP2 Cytoskeleton-associated protein 2 yes yes 2 0.031417 27.742 By MS/MS By matching 1 1 1.0893 1.1313 20.617 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9446 0.9778 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2562 1.3088 NaN 1 0 Median NaN NaN NaN 0 0 Median 1196000 542290 653690 0 0 0 0 0 0 964290 442500 521800 0 0 0 231690 99795 131890 0 0 0 6000 3510 6250 30466;30467 30617 30617 1 EDINAIEMEEDKR RFPVAPLIPYPLITKEDINAIEMEEDKRDL TKEDINAIEMEEDKRDLISREISKFRDTHK K E D K R D 1 1 1 2 0 0 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 13 1 1590.7196 P49756;H0YE46 P49756 262 274 RBM25 RNA-binding protein 25 yes no 2;3 4.2241E-10 176.95 By MS/MS By MS/MS By MS/MS 8 6 2 1.0281 1.0613 23.982 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93665 1.0608 15.524 8 4 Median 1.2522 1.2034 27.593 6 0 Median NaN NaN NaN 0 0 Median 0.93971 0.82293 17.211 2 0 Median 140370000 70733000 69633000 0 0 0 0 0 0 103210000 54007000 49205000 35315000 15801000 19513000 0 0 0 1837600 923760 913850 6001 2397 6251;6252 30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480;30481;30482;30483 30618;30619;30620;30621;30622;30623;30624;30625;30626;30627;30628;30629;30630;30631;30632 30623 1107 15 EDINAIEMEEDKRDLISR RFPVAPLIPYPLITKEDINAIEMEEDKRDL NAIEMEEDKRDLISREISKFRDTHKKLEEE K E D S R E 1 2 1 3 0 0 4 0 0 3 1 1 1 0 0 1 0 0 0 0 0 0 18 2 2175.0478 P49756;H0YE46 P49756 262 279 RBM25 RNA-binding protein 25 yes no 4 0.0046118 25.508 By MS/MS 1 0.78579 0.88584 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78579 0.88584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5526400 2644500 2881900 0 0 0 0 0 0 5526400 2644500 2881900 0 0 0 0 0 0 0 0 0 6002 2397 6253 30484 30633 30633 1 EDIPVNYMK NKVKIQPDTIIQVWREDIPVNYMKELELVT IIQVWREDIPVNYMKELELVTKAGFRALLS R E D M K E 0 0 1 1 0 0 1 0 0 1 0 1 1 0 1 0 0 0 1 1 0 0 9 0 1107.527 H3BS10;H3BP20;P06865 H3BS10 394 402 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.048883 44.767 By MS/MS 1 0.58539 0.55248 NaN 1 Median 0.58539 0.55248 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5112600 3091200 2021400 5112600 3091200 2021400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6003 1218 6254 30485 30634 30634 1 EDIQSVMTEIR YRGALWILGEYCSTKEDIQSVMTEIRRSLG CSTKEDIQSVMTEIRRSLGEIPIVESEIKK K E D I R R 0 1 0 1 0 1 2 0 0 2 0 0 1 0 0 1 1 0 0 1 0 0 11 0 1319.6391 P53618;E9PP73 P53618 470 480 COPB1 Coatomer subunit beta yes no 2 0.00083547 86.624 By MS/MS 1 1.1368 1.0985 NaN 1 Median 1.1368 1.0985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6350800 2492300 3858500 6350800 2492300 3858500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6004 2472 6255 30486 30635 30635 1 EDISSIEIVGGATR EPPLKAVMEQANLQREDISSIEIVGGATRI REDISSIEIVGGATRIPAVKEQITKFFLKD R E D T R I 1 1 0 1 0 0 2 2 0 3 0 0 0 0 0 2 1 0 0 1 0 0 14 0 1445.7362 O95757;E9PDE8;D6RJ96 O95757 333 346 HSPA4L Heat shock 70 kDa protein 4L yes no 2 2.5062E-08 112.15 By MS/MS By MS/MS By MS/MS 1 1 1 1.2999 1.1264 30.052 3 Median 0.95789 0.92261 NaN 1 0 Median 1.2999 1.1264 NaN 1 0 Median 1.5559 1.6657 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19814000 9141700 10672000 13468000 6935500 6532500 3898400 1231600 2666800 2447300 974630 1472700 0 0 0 0 0 0 0 0 0 6005 1790 6256 30487;30488;30489 30636;30637;30638;30639 30637 4 EDITHSAQHALR RDPTDALSYMTIQQKEDITHSAQHALRLSA QQKEDITHSAQHALRLSAFGQIYKVLEMDP K E D L R L 2 1 0 1 0 1 1 0 2 1 1 0 0 0 0 1 1 0 0 0 0 0 12 0 1376.6797 Q96SI9 Q96SI9 304 315 STRBP Spermatid perinuclear RNA-binding protein yes yes 3 0.0653 21.55 By MS/MS 1 0.78901 0.82721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78901 0.82721 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5100700 2697800 2402900 0 0 0 0 0 0 5100700 2697800 2402900 0 0 0 0 0 0 0 0 0 6006 3734 6257 30490 30640 30640 1 EDITQSAQHALR KEATDAIGHLDRQQREDITQSAQHALRLAA QQREDITQSAQHALRLAAFGQLHKVLGMDP R E D L R L 2 1 0 1 0 2 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 12 0 1367.6793 Q12906 Q12906 312 323 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 1.094E-23 205.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 7 8 6 7 8 1.0293 1.0163 24.508 37 Median 1.1274 1.0667 71.095 3 0 Median 1.33 1.1507 27.414 7 2 Median 0.94239 0.98071 3.8579 7 1 Median 1.3229 1.1412 7.4222 6 1 Median 0.99068 0.97587 11.07 7 0 Median 1.1493 0.9206 17.556 7 0 Median 638290000 298000000 340290000 19495000 9964200 9531100 31518000 13283000 18235000 169580000 82595000 86981000 68834000 29517000 39318000 259480000 121930000 137550000 89391000 40716000 48675000 6007 2769 6258 30491;30492;30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515;30516;30517;30518;30519;30520;30521;30522;30523;30524;30525;30526;30527;30528;30529 30641;30642;30643;30644;30645;30646;30647;30648;30649;30650;30651;30652;30653;30654;30655;30656;30657;30658;30659;30660;30661;30662;30663;30664;30665;30666;30667;30668;30669;30670;30671;30672;30673;30674;30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689;30690;30691;30692 30661 52 EDITSSAQFALR KDPFDTLATMTDQQREDITSSAQFALRLLA QQREDITSSAQFALRLLAFRQIHKVLGMDP R E D L R L 2 1 0 1 0 1 1 0 0 1 1 0 0 1 0 2 1 0 0 0 0 0 12 0 1336.6623 Q96KR1 Q96KR1 1008 1019 ZFR Zinc finger RNA-binding protein yes yes 2 1.1108E-10 138.11 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.5561 1.2647 32.759 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4128 1.5776 52.566 2 1 Median 1.8408 1.5589 41.776 2 0 Median 0.96602 1.1384 NaN 1 0 Median 1.76 1.3786 NaN 1 0 Median 89065000 32922000 56143000 0 0 0 0 0 0 74228000 27048000 47180000 3473100 851780 2621300 8329600 3718000 4611600 3033700 1303800 1729900 6008 3697 6259 30530;30531;30532;30533;30534;30535;30536 30693;30694;30695;30696 30693 4 EDIYAVEIVGGATR EPPLRSVLEQTKLKKEDIYAVEIVGGATRI KEDIYAVEIVGGATRIPAVKEKISKFFGKE K E D T R I 2 1 0 1 0 0 2 2 0 2 0 0 0 0 0 0 1 0 1 2 0 0 14 0 1491.7569 P34932;A0A087WYC1;A0A087WTS8 P34932 333 346 HSPA4 Heat shock 70 kDa protein 4 yes no 2 6.5451E-08 101.93 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.88498 0.85528 73.652 4 Median 1.0835 1.0459 NaN 1 0 Median 1.0922 0.93383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72283 0.78333 NaN 1 0 Median 0.21354 0.21375 NaN 1 0 Median NaN NaN NaN 0 0 Median 14405000 7760800 6644300 7485300 3216300 4269000 2628400 1235300 1393200 0 0 0 1391900 790280 601570 2899500 2518900 380530 0 0 0 6009 2230 6260 30537;30538;30539;30540;30541 30697;30698;30699 30698 3 EDIYSGGGGGGSR PIQGHRVEVKKAVPKEDIYSGGGGGGSRSS PKEDIYSGGGGGGSRSSRGGRGGRGRGGGR K E D S R S 0 1 0 1 0 0 1 6 0 1 0 0 0 0 0 2 0 0 1 0 0 0 13 0 1210.5214 Q13151 Q13151 177 189 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 1.7998E-05 86.898 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.115 0.98936 10.594 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89807 0.88689 NaN 1 0 Median 1.1797 0.98385 NaN 1 0 Median 0.94311 0.93828 19.427 2 1 Median 1.241 1.0257 4.31 2 0 Median 17464000 7974200 9490300 0 0 0 0 0 0 3311000 1702200 1608800 2530400 1193000 1337400 9119400 3915800 5203600 2503700 1163200 1340400 6010 2790 6261 30542;30543;30544;30545;30546;30547;30548 30700;30701;30702;30703;30704;30705;30706 30703 7 EDLDKVEPAVIEAQNAVK HKQQEVIADKQMSVKEDLDKVEPAVIEAQN DKVEPAVIEAQNAVKSIKKQHLVEVRSMAN K E D V K S 3 0 1 2 0 1 3 0 0 1 1 2 0 0 1 0 0 0 0 3 0 0 18 1 1967.0211 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3280 3297 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 8.9534E-40 160.69 By MS/MS By matching By MS/MS By MS/MS 3 2 1 2 0.95916 0.9563 15.88 8 Median 0.87594 0.95366 5.0267 3 1 Median 1.1761 1.1364 32.09 2 0 Median 0.73987 0.83727 NaN 1 0 Median 1.0016 0.97298 2.0534 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86827000 47512000 39315000 33884000 19766000 14118000 24127000 12182000 11945000 27333000 14863000 12470000 1483000 700860 782160 0 0 0 0 0 0 6011 2865 6262 30549;30550;30551;30552;30553;30554;30555;30556 30707;30708;30709;30710;30711;30712 30709 6 EDLMGLAIGTHGANIQQAR SKQLAAAFQEEFTVREDLMGLAIGTHGANI GLAIGTHGANIQQARKVPGVTAIELGEETC R E D A R K 3 1 1 1 0 2 1 3 1 2 2 0 1 0 0 0 1 0 0 0 0 0 19 0 1994.0004 P51116;R9WNI0;A8MQB8;G3V0J0;Q06787;A0A087WY29;Q8IXW7;A0A087WXI3;A0A087WWR6 P51116 237 255 FXR2;FMR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1 no no 3 0.001936 40.856 By MS/MS 1 1.5474 1.6607 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5474 1.6607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3445800 1814400 1631400 0 0 0 0 0 0 3445800 1814400 1631400 0 0 0 0 0 0 0 0 0 6012 2426;539 6263 30557 30713 30713 1 EDLMGLAIGTHGSNIQQAR TKQLAAAFHEEFVVREDLMGLAIGTHGSNI GLAIGTHGSNIQQARKVPGVTAIELDEDTG R E D A R K 2 1 1 1 0 2 1 3 1 2 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2009.9953 B4DXZ6;P51114;E7EU85;E9PFF5 B4DXZ6 214 232 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.254E-18 125.45 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.0406 0.98337 15.427 5 Median 0.99804 0.96006 NaN 1 1 Median 1.0909 0.97124 29.994 2 0 Median 1.0406 1.0509 NaN 1 0 Median 1.1468 0.98337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39081000 19288000 19792000 6868900 4250400 2618600 4859300 2349000 2510400 26550000 12222000 14328000 802860 467200 335670 0 0 0 0 0 0 6013 608 6264 30558;30559;30560;30561;30562 30714;30715 30715 2 EDLQELNDR STPLSPTRITRLQEKEDLQELNDRLAVYID TRLQEKEDLQELNDRLAVYIDRVRSLETEN K E D D R L 0 1 1 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1130.5204 P02545;Q3BDU5 P02545 33 41 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00043177 128.69 By MS/MS By matching By MS/MS 2 2 1 1.1357 1.0931 11.081 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0946 1.1329 5.0578 2 0 Median 1.1812 1.0026 15.998 2 0 Median NaN NaN NaN 0 0 Median 1.1357 0.97704 NaN 1 1 Median 30679000 12924000 17755000 0 0 0 0 0 0 16776000 6854200 9921900 9446100 3640200 5805900 0 0 0 4457000 2429600 2027500 6014 1834;3010 6265 30563;30564;30565;30566;30567 30716;30717 30716 2 EDLQLDKPASGVK IRFVIKKHELLNSTREDLQLDKPASGVKEE TREDLQLDKPASGVKEEWYARITKLRKMVD R E D V K E 1 0 0 2 0 1 1 1 0 0 2 2 0 0 1 1 0 0 0 1 0 0 13 1 1398.7355 P78347;A0A494C1K3;A0A494C0Q7 P78347 444 456 GTF2I General transcription factor II-I yes no 2 4.7711E-06 98.943 By MS/MS By MS/MS By MS/MS 1 2 2 0.73239 0.69765 17.468 5 Median NaN NaN NaN 0 0 Median 0.88441 0.82831 NaN 1 0 Median 0.5523 0.63327 7.5852 2 0 Median 0.8346 0.8051 20.258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12742000 7239200 5502600 0 0 0 1645100 741600 903460 7365200 4570700 2794500 3731600 1927000 1804700 0 0 0 0 0 0 6015 2642 6266 30568;30569;30570;30571;30572 30718;30719;30720;30721;30722;30723 30723 6 EDLQLDKPASGVKEEWYAR IRFVIKKHELLNSTREDLQLDKPASGVKEE LDKPASGVKEEWYARITKLRKMVDQLFCKK R E D A R I 2 1 0 2 0 1 3 1 0 0 2 2 0 0 1 1 0 1 1 1 0 0 19 2 2233.1015 P78347;A0A494C1K3;A0A494C0Q7 P78347 444 462 GTF2I General transcription factor II-I yes no 3;4 5.757E-21 158.98 By MS/MS 2 0.62739 0.71489 15.043 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62739 0.71489 15.043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60995000 38005000 22990000 0 0 0 0 0 0 60995000 38005000 22990000 0 0 0 0 0 0 0 0 0 6016 2642 6267 30573;30574 30724;30725;30726;30727 30724 4 EDLQLWCHKR FHVHRYPIDTLPTSKEDLQLWCHKRWEEKE LPTSKEDLQLWCHKRWEEKEERLRSFYQGE K E D K R W 0 1 0 1 1 1 1 0 1 0 2 1 0 0 0 0 0 1 0 0 0 0 10 1 1383.6718 Q6UWP7 Q6UWP7 298 307 LCLAT1 Lysocardiolipin acyltransferase 1 yes yes 3 0.06658 10.005 By MS/MS By matching 1 1 1.551 1.434 9.9778 2 Median NaN NaN NaN 0 0 Median 1.4753 1.3363 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6306 1.5388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2715000 1212200 1502800 0 0 0 2335300 1046100 1289200 0 0 0 379710 166120 213590 0 0 0 0 0 0 6017 3187 6268 30575;30576 30728 30728 1 EDLRLPEGDLGK QDGYLSLLQDSGEVREDLRLPEGDLGKEIE EVREDLRLPEGDLGKEIEQKYDCGEEILIT R E D G K E 0 1 0 2 0 0 2 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 1 1340.6936 I3L397;I3L504;P63241 I3L397 110 121 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 2;3 1.0359E-08 171.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 0.99505 0.90733 18.519 9 Median 0.97943 0.95519 7.2694 2 0 Median 1.003 0.88546 1.1205 2 0 Median 0.87215 0.89527 2.8203 3 0 Median 1.2967 1.1479 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9222 1.5371 NaN 1 0 Median 537020000 269690000 267330000 177960000 86684000 91273000 82745000 40445000 42300000 267780000 138780000 129000000 6235700 2860200 3375500 0 0 0 2297800 911840 1386000 6018 1287 6269 30577;30578;30579;30580;30581;30582;30583;30584;30585 30729;30730;30731;30732;30733;30734;30735;30736;30737;30738;30739;30740;30741;30742;30743;30744;30745;30746;30747 30743 19 EDLRLPEGDLGKEIEQK QDGYLSLLQDSGEVREDLRLPEGDLGKEIE LRLPEGDLGKEIEQKYDCGEEILITVLSAM R E D Q K Y 0 1 0 2 0 1 4 2 0 1 3 2 0 0 1 0 0 0 0 0 0 0 17 2 1968.0164 I3L397;I3L504;P63241 I3L397 110 126 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 yes no 3;4 4.0904E-14 113.33 By matching By MS/MS 1 2 0.77882 0.87895 4.787 3 Median NaN NaN NaN 0 0 Median 0.91936 0.94071 NaN 1 0 Median 0.76934 0.86825 1.7323 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65017000 33300000 31717000 0 0 0 3392700 1766500 1626200 61624000 31533000 30091000 0 0 0 0 0 0 0 0 0 6019 1287 6270 30586;30587;30588 30748;30749;30750;30751 30748 4 EDLTEIR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV NVGFVFTKEDLTEIRDMLLANKVPAAARAG K E D I R D 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 874.43961 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4;F8VS58;F8VZS0 P05388 93 99 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.0081656 88.029 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1742 1.0357 12.335 4 Median NaN NaN NaN 0 0 Median 1.1683 0.97147 NaN 1 0 Median 1.1802 1.1583 NaN 1 0 Median 1.3236 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0922 0.8828 NaN 1 1 Median 42856000 19727000 23129000 0 0 0 20247000 9325700 10922000 7958300 4121000 3837400 6281100 2650600 3630500 0 0 0 8369600 3629900 4739800 6020 1865 6271 30589;30590;30591;30592 30752;30753;30754;30755 30752 4 EDLTEIRDMLLANK LLPHIRGNVGFVFTKEDLTEIRDMLLANKV KEDLTEIRDMLLANKVPAAARAGAIAPCEV K E D N K V 1 1 1 2 0 0 2 0 0 1 3 1 1 0 0 0 1 0 0 0 0 0 14 1 1659.8502 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4;F8VS58;F8VZS0 P05388 93 106 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 3 0.070143 11.44 By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1.2877 1.1823 39.357 6 Median 0.57711 0.6213 NaN 1 0 Median 1.1357 0.98914 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5852 1.4491 22.062 2 0 Median 1.7227 1.8387 NaN 1 0 Median 1.2621 1.1275 NaN 1 0 Median 78712000 40880000 37832000 639410 372880 266540 73436000 38492000 34943000 0 0 0 398770 191450 207320 223460 85214 138240 4015100 1737900 2277100 6021 1865 6272 30593;30594;30595;30596;30597;30598 30756 30756 1 EDLTEIRDMLLANKVPAAAR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV IRDMLLANKVPAAARAGAIAPCEVTVPAQN K E D A R A 4 2 1 2 0 0 2 0 0 1 3 1 1 0 1 0 1 0 0 1 0 0 20 2 2225.1838 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4 P05388 93 112 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 4 0.00041018 31.462 By MS/MS 1 0.9314 1.0927 NaN 1 Median NaN NaN NaN 0 0 Median 0.9314 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2495700 1368000 1127700 0 0 0 2495700 1368000 1127700 0 0 0 0 0 0 0 0 0 0 0 0 6022 1865 6273 30599 30757;30758 30758 2 EDLVVAPAGITLK EEEHDCFLEEIMTKREDLVVAPAGITLKEA KREDLVVAPAGITLKEANEILQRSKKGKLP R E D L K E 2 0 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P12268;H0Y4R1;E7ETK5 P12268 183 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.00049996 72.006 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0669 0.90122 19.278 5 Median 1.1216 1.0692 30.556 2 0 Median 1.0669 0.90122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0982 0.96639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97401 0.81191 NaN 1 0 Median 56305000 27255000 29050000 16700000 8288100 8411600 38803000 18595000 20209000 0 0 0 208080 99397 108680 0 0 0 593640 272430 321210 6023 1148 6274 30600;30601;30602;30603;30604 30759;30760;30761;30762 30759 4 EDLYLKPIQR LKVRIMGPNYTPGKKEDLYLKPIQRTILMM TPGKKEDLYLKPIQRTILMMGRYVEPIEDV K E D Q R T 0 1 0 1 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 10 1 1273.703 P13639 P13639 440 449 EEF2 Elongation factor 2 yes yes 2;3 6.8513E-10 176.41 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 5 2 4 2 2 0.80739 0.79979 25.591 22 Median 0.9396 0.98163 20.903 7 1 Median 0.77353 0.70546 9.561 5 0 Median 0.90727 1.0271 3.5748 2 0 Median 0.6402 0.58926 29.486 4 0 Median 0.91572 1.0111 23.988 2 0 Median 0.74079 0.66104 22.173 2 0 Median 529720000 279840000 249880000 158190000 79499000 78686000 291140000 157750000 133390000 44190000 22513000 21677000 26531000 14563000 11968000 6691100 3921400 2769700 2989200 1593100 1396100 6024 1992 6275 30605;30606;30607;30608;30609;30610;30611;30612;30613;30614;30615;30616;30617;30618;30619;30620;30621;30622;30623;30624;30625;30626 30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778;30779;30780;30781;30782;30783;30784;30785 30785 23 EDMAALEK YVGEGMEEGEFSEAREDMAALEKDYEEVGV GEFSEAREDMAALEKDYEEVGVDSVEGEGE R E D E K D 2 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 0 905.41643 Q9BQE3;F5H5D3;P68363;P68366;Q71U36 P68363 423 430 TUBA1C;TUBA1B;TUBA4A;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2 0.0062885 71.877 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 2 2 4 1.1174 0.95426 18.244 17 Median 1.0373 0.95426 22.69 3 0 Plateau 1.1028 0.94166 17.099 6 0 Median 1.1048 1.1016 8.845 2 0 Median 1.2263 1.0769 5.1615 2 0 Median NaN NaN NaN 0 0 Median 1.1541 0.9315 6.4419 4 0 Median 337450000 152620000 184830000 39806000 18683000 21123000 242360000 109600000 132760000 20071000 8908900 11163000 14469000 6520500 7948000 0 0 0 20738000 8902700 11836000 6025 2633;3212;1034 6276;6277 30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643 30786;30787;30788;30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799;30800;30801;30802;30803;30804 30791 354 19 EDMEEDQEHTYR IYLHNHLSFILYYHREDMEEDQEHTYRVVR YHREDMEEDQEHTYRVVRFEVIPQSIRLED R E D Y R V 0 1 0 2 0 1 4 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 12 0 1580.6049 A0A0C4DFM1;Q92544 A0A0C4DFM1 175 186 TM9SF4 Transmembrane 9 superfamily member 4 yes no 3 0.00085272 46.88 By MS/MS 1 1.278 1.0793 NaN 1 Median NaN NaN NaN 0 0 Median 1.278 1.0793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1525900 700750 825130 0 0 0 1525900 700750 825130 0 0 0 0 0 0 0 0 0 0 0 0 6026 229 6278 30644 30805 30805 1 EDMTPLNLSSR HGELHPSEGPWGAPREDMTPLNLSSRAEPV GAPREDMTPLNLSSRAEPVRDIRCEFCGEF R E D S R A 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 2 1 0 0 0 0 0 11 0 1261.5973 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 391 401 WIZ Protein Wiz yes no 2 0.0001192 90.108 By MS/MS By MS/MS 1 2 0.83717 0.87872 5.875 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83717 0.87872 5.875 2 0 Median NaN NaN NaN 0 0 Median 7897000 3981900 3915100 0 0 0 0 0 0 0 0 0 0 0 0 7897000 3981900 3915100 0 0 0 6027 656 6279 30645;30646;30647 30806;30807;30808 30806 3 EDMTYAVR DVYRDGTGVVEFVRKEDMTYAVRKLDNTKF VVEFVRKEDMTYAVRKLDNTKFRSHEGETA K E D V R K 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 8 0 983.43823 J3KTL2;Q07955;J3KSR8 J3KTL2 166 173 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.013068 63.48 By MS/MS By MS/MS 1 2 1.1812 1.0438 19.835 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1812 1.1767 NaN 1 0 Median 1.1247 0.91309 18.921 2 1 Median 7041900 3552300 3489600 0 0 0 0 0 0 0 0 0 0 0 0 5081500 2630100 2451400 1960400 922270 1038200 6028 1337 6280 30648;30649;30650 30809;30810 30809 2 EDNFNTAMQVLR GDGLHLVVDENGDFREDNFNTAMQVLRDAG DFREDNFNTAMQVLRDAGDLAKGDQKGRKG R E D L R D 1 1 2 1 0 1 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 12 0 1436.6718 P42285 P42285 340 351 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 4.6895E-06 102.61 By MS/MS By matching 2 1 1.1551 1.2343 20.03 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2439 1.3504 12.711 2 0 Median 1.1551 0.99042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6542800 3104500 3438300 0 0 0 0 0 0 5913400 2832600 3080800 629470 271870 357600 0 0 0 0 0 0 6029 2309 6281 30651;30652;30653 30811;30812;30813;30814 30811 4 EDNQTNRLQEALNLFK IIFVVASSSYNMVIREDNQTNRLQEALNLF DNQTNRLQEALNLFKSIWNNRWLRTISVIL R E D F K S 1 1 3 1 0 2 2 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 16 1 1931.9701 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6 Q5JWF2 902 917 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 3 0.026481 18.138 By MS/MS 1 0.24698 0.28045 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24698 0.28045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4357300 3528000 829350 0 0 0 0 0 0 4357300 3528000 829350 0 0 0 0 0 0 0 0 0 6030 2616 6282 30654 30815 30815 1 EDPNLVPSISNK DPYNVLAPKGASGTREDPNLVPSISNKRIV GTREDPNLVPSISNKRIVGCICEEDNTSVV R E D N K R 0 0 2 1 0 0 1 0 0 1 1 1 0 0 2 2 0 0 0 1 0 0 12 0 1311.667 P10606 P10606 75 86 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2 0.00060056 70.808 By MS/MS By matching 1 1 0.3821 0.34357 130.23 2 Median NaN NaN NaN 0 0 Median 1.0471 0.86284 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.13943 0.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9746100 4737800 5008300 0 0 0 8226300 3494000 4732300 0 0 0 1519700 1243800 275920 0 0 0 0 0 0 6031 1943 6283 30655;30656 30816;30817;30818;30819 30818 4 EDPNLVPSISNKR DPYNVLAPKGASGTREDPNLVPSISNKRIV TREDPNLVPSISNKRIVGCICEEDNTSVVW R E D K R I 0 1 2 1 0 0 1 0 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 1 1467.7682 P10606 P10606 75 87 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2;3 2.2649E-07 99.941 By MS/MS By MS/MS By MS/MS 1 2 1 0.94228 0.82644 32.257 4 Linear 0.58188 0.57059 NaN 1 0 Median 0.89086 0.78653 6.867 2 0 Median 0.38593 0.40199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42183000 23358000 18825000 5954100 3937500 2016600 32166000 16800000 15366000 4062900 2621100 1441800 0 0 0 0 0 0 0 0 0 6032 1943 6284 30657;30658;30659;30660 30820;30821;30822;30823;30824;30825;30826;30827;30828 30825 9 EDPTVSALLTSEK VDHTPKLKLWMAAMKEDPTVSALLTSEKDW MKEDPTVSALLTSEKDWQGFLELYLQNSPE K E D E K D 1 0 0 1 0 0 2 0 0 0 2 1 0 0 1 2 2 0 0 1 0 0 13 0 1388.7035 P78417;Q5TA02;Q5TA01 P78417 208 220 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.00015975 94.465 By MS/MS 1 0.8277 0.76874 NaN 1 Median 0.8277 0.76874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19471000 8376600 11095000 19471000 8376600 11095000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6033 2646 6285 30661 30829 30829 1 EDQLGLSLLSLEQLESEETLKR VAKYFLRQMAQPFHREDQLGLSLLSLEQLE LLSLEQLESEETLKRIEQIAQQL_______ R E D K R I 0 1 0 1 0 2 5 1 0 0 7 1 0 0 0 3 1 0 0 0 0 0 22 1 2529.3174 P18074;E7EVE9 P18074 731 752 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 0.071689 3.3983 By MS/MS 1 1.3247 1.3307 NaN 1 Median NaN NaN NaN 0 0 Median 1.3247 1.3307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 604900 276250 328650 0 0 0 604900 276250 328650 0 0 0 0 0 0 0 0 0 0 0 0 6034 2053 6286 30662 30830 30830 1 EDQSILCTGESGAGK YAITDTAYRSMMQDREDQSILCTGESGAGK EDQSILCTGESGAGKTENTKKVIQYLAYVA R E D G K T 1 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1550.6883 P35579;Q5BKV1;Q7Z406;P35580;E7ERA5 P35579 166 180 MYH9;MYH14;MYH10 Myosin-9;Myosin-14;Myosin-10 no no 2 8.4804E-08 98.105 By MS/MS 1 1.0526 0.93322 NaN 1 Median NaN NaN NaN 0 0 Median 1.0526 0.93322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765200 2731700 3033500 0 0 0 5765200 2731700 3033500 0 0 0 0 0 0 0 0 0 0 0 0 6035 2244;2245;3242 6287 30663 30831;30832 30832 2 EDQTEYLEER GEPMGRGTKVILHLKEDQTEYLEERRIKEI ILHLKEDQTEYLEERRIKEIVKKHSQFIGY K E D E R R 0 1 0 1 0 1 4 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1310.5626 P07900;G3V2J8;P08238;Q58FF7;Q58FF6 P07900 192 201 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB4P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4 no no 2 5.8577E-06 154.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 5 2 2 1 2 1.1436 1.0313 14.02 12 Median 1.1279 1.0658 NaN 1 0 Median 1.1351 0.98189 12.065 5 0 Median 1.1003 1.1624 17.594 2 0 Median 1.2707 1.0856 17.484 2 0 Median 1.1583 1.2586 NaN 1 0 Median 1.1807 0.95686 NaN 1 0 Median 300090000 137950000 162140000 86583000 39373000 47210000 172080000 79239000 92841000 24361000 11198000 13163000 14274000 6925800 7348100 2120300 947490 1172800 676780 269810 406960 6036 1894;1899;3039 6288 30664;30665;30666;30667;30668;30669;30670;30671;30672;30673;30674;30675;30676 30833;30834;30835;30836;30837;30838;30839;30840;30841;30842;30843;30844;30845;30846;30847;30848 30846 16 EDQTEYLEERR GEPMGRGTKVILHLKEDQTEYLEERRIKEI LHLKEDQTEYLEERRIKEIVKKHSQFIGYP K E D R R I 0 2 0 1 0 1 4 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 11 1 1466.6638 P07900;G3V2J8;P08238;Q58FF7 P07900 192 202 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2;3 4.2037E-05 92.866 By MS/MS By MS/MS By MS/MS 2 2 1 1.1457 1.154 6.8118 4 Median 1.0857 1.1132 7.4391 2 0 Median 1.2007 1.1879 6.4547 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35003000 15979000 19023000 27718000 12953000 14765000 7284500 3026900 4257700 0 0 0 0 0 0 0 0 0 0 0 0 6037 1894;1899 6289 30677;30678;30679;30680;30681 30849;30850;30851;30852;30853;30854 30852 6 EDQTLALLNQFK YEALRKQQSKKGTSREDQTLALLNQFKSKL TSREDQTLALLNQFKSKLTQAIAETPENDI R E D F K S 1 0 1 1 0 2 1 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 Q6UX04 Q6UX04 382 393 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes yes 2 0.0076442 38.303 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.165 1.0973 7.2254 5 Median 1 0.96421 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.165 1.1768 NaN 1 0 Median 1.2772 1.0973 NaN 1 0 Median 1.1456 1.1 NaN 1 0 Median 1.3399 1.0921 NaN 1 0 Median 13711000 5835700 7875100 2462800 1269800 1193000 0 0 0 4330000 1899600 2430500 517890 232340 285560 1623400 721240 902160 4776600 1712700 3063900 6038 3189 6290 30682;30683;30684;30685;30686 30855;30856;30857 30855 3 EDQVIQLMNAIFSK TYKLMDHVGTEPSIKEDQVIQLMNAIFSKK KEDQVIQLMNAIFSKKNFESLSEAFSVASA K E D S K K 1 0 1 1 0 2 1 0 0 2 1 1 1 1 0 1 0 0 0 1 0 0 14 0 1634.8338 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 230 243 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.043923 24.853 By MS/MS By matching By matching 3 3 1 1.2184 1.0825 8.2936 7 Median 1.0811 1.0739 6.8046 3 0 Median 1.2383 1.1031 5.4005 3 0 Median NaN NaN NaN 0 0 Median 1.4085 1.241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2275500 1103600 1171900 1653200 838790 814400 533200 225990 307220 0 0 0 89072 38783 50289 0 0 0 0 0 0 6039 1854 6291 30687;30688;30689;30690;30691;30692;30693 30858 30858 1 EDSAPSKPVVGIIYPPPEVR PTEPKQPTEEEASSKEDSAPSKPVVGIIYP SKPVVGIIYPPPEVRNIVDKTASFVARNGP K E D V R N 1 1 0 1 0 0 2 1 0 2 0 1 0 0 5 2 0 0 1 3 0 0 20 1 2149.1419 Q15459;F8WB66 Q15459 31 50 SF3A1 Splicing factor 3A subunit 1 yes no 3 0.00051968 29.892 By MS/MS By MS/MS 1 2 0.56062 0.53877 17.671 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38847 0.44055 NaN 1 0 Median 0.61895 0.58101 10.675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11260000 7715800 3543800 0 0 0 0 0 0 8755400 6201100 2554200 2504300 1514700 989620 0 0 0 0 0 0 6040 2954 6292 30694;30695;30696 30859;30860;30861;30862 30861 3 EDSAVFYELK GRAGKSGVAITFLTKEDSAVFYELKQAILE TFLTKEDSAVFYELKQAILESPVSSCPPEL K E D L K Q 1 0 0 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1199.571 Q9BUQ8 Q9BUQ8 771 780 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0059578 49.715 By matching By matching By MS/MS 1 1 2 0.75371 0.74661 22.238 4 Median 0.94194 0.92771 NaN 1 0 Median 0.69916 0.62888 NaN 1 0 Median 0.65018 0.73397 26.682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16876000 8816000 8059600 3664600 1716400 1948200 541500 332520 208980 12670000 6767100 5902500 0 0 0 0 0 0 0 0 0 6041 3842 6293 30697;30698;30699;30700 30863;30864 30863 2 EDSGSVPSTGPSQGTPISLK PCQWSYVTSVPSAPKEDSGSVPSTGPSQGT VPSTGPSQGTPISLKRKSAGSMCITQFMKK K E D L K R 0 0 0 1 0 1 1 3 0 1 1 1 0 0 3 5 2 0 0 1 0 0 20 0 1942.9484 Q13111 Q13111 851 870 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 1.5716E-07 61.212 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.69996 0.71523 13.67 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65964 0.71523 NaN 1 0 Median 0.81071 0.69983 22.388 2 0 Median 0.59641 0.61654 NaN 1 0 Median 0.90018 0.76588 NaN 1 0 Median 12167000 7444400 4722600 0 0 0 0 0 0 4262900 2569700 1693200 2981100 1623100 1358000 4720000 3135800 1584100 202990 115730 87265 6042 2785 6294 30701;30702;30703;30704;30705 30865;30866;30867;30868 30868 4 EDSHPFDLGLYNEAVK TAKATILCTSYVQFKEDSHPFDLGLYNEAV DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ K E D V K I 1 0 1 2 0 0 2 1 1 0 2 1 0 1 1 1 0 0 1 1 0 0 16 0 1832.8581 P35244;B5MC59 P35244 89 104 RPA3 Replication protein A 14 kDa subunit yes no 3 3.5836E-05 52.527 By matching By MS/MS By MS/MS 1 1 1 1.0588 0.95674 13.783 3 Plateau NaN NaN NaN 0 0 Median 0.89396 0.76766 NaN 1 0 Median 1.0588 1.0112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0636 0.87438 NaN 1 0 Median 25421000 12592000 12829000 0 0 0 249650 152590 97054 15562000 7473400 8088900 0 0 0 0 0 0 9609400 4966300 4643200 6043 2236 6295 30706;30707;30708 30869;30870;30871;30872 30870 4 EDSMMEYLK ERIQNWHEEHRGMLREDSMMEYLKIAQDLE HRGMLREDSMMEYLKIAQDLEMYGVNYFEI R E D L K I 0 0 0 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 1 0 0 0 9 0 1144.478 P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PKN5 P35241 185 193 RDX Radixin yes no 2 0.023287 38.16 By MS/MS By matching By MS/MS 1 2 1 1.2901 1.1906 4.6812 4 Median 1.2646 1.2064 NaN 1 0 Median 1.3765 1.2324 6.7574 2 0 Median 1.0989 1.1667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7588700 3305200 4283500 3990100 1743000 2247100 1422700 522830 899890 2175900 1039400 1136500 0 0 0 0 0 0 0 0 0 6044 2235 6296 30709;30710;30711;30712 30873;30874;30875 30873 3 EDSNLTLQEK DAKTPDKMKKSKSVKEDSNLTLQEKKEKIQ SKSVKEDSNLTLQEKKEKIQTGLKKLTELG K E D E K K 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1175.567 P46940;H0YLE8 P46940 1446 1455 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.042538 30.318 By MS/MS 1 1.0323 0.91183 NaN 1 Median NaN NaN NaN 0 0 Median 1.0323 0.91183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1984900 989880 995040 0 0 0 1984900 989880 995040 0 0 0 0 0 0 0 0 0 0 0 0 6045 2350 6297 30713 30876 30876 1 EDSQRPGAHLTVK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI SREDSQRPGAHLTVKKIFVGGIKEDTEEHH R E D V K K 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1436.7372 P09651;F8W6I7;F8VZ49;Q32P51;F8W646;F8VYN5 P09651 93 105 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 1.9112E-06 117.52 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 11 9 19 13 0.91726 0.91684 12.136 64 Median 1.058 1.1106 9.2548 6 0 Median 1.0038 0.91824 7.9032 6 0 Median 0.83701 0.89747 3.2149 11 0 Median 1.0384 0.94835 10.239 9 0 Median 0.86025 0.95578 11.39 19 0 Median 0.99998 0.81431 11.017 13 0 Median 1082900000 565100000 517760000 7760200 3702700 4057500 40360000 19835000 20525000 373090000 201210000 171880000 123900000 59982000 63917000 454460000 240060000 214400000 83291000 40314000 42977000 6046 1919 6298 30714;30715;30716;30717;30718;30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729;30730;30731;30732;30733;30734;30735;30736;30737;30738;30739;30740;30741;30742;30743;30744;30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756;30757;30758;30759;30760;30761;30762;30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775;30776;30777 30877;30878;30879;30880;30881;30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906;30907;30908;30909 30883 33 EDSQRPGAHLTVKK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI REDSQRPGAHLTVKKIFVGGIKEDTEEHHL R E D K K I 1 1 0 1 0 1 1 1 1 0 1 2 0 0 1 1 1 0 0 1 0 0 14 2 1564.8322 P09651;F8W6I7;F8VZ49;Q32P51;F8W646;F8VYN5 P09651 93 106 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 0.00031069 54.524 By matching By MS/MS By MS/MS 1 2 3 1.0618 0.9955 12.279 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0237 0.99394 NaN 1 0 Median 0.81836 0.95386 0.11356 2 0 Median 1.3596 1.1082 13.705 3 0 Median 155410000 83816000 71595000 0 0 0 0 0 0 0 0 0 1286100 593590 692520 151080000 81795000 69285000 3045900 1427900 1617900 6047 1919 6299 30778;30779;30780;30781;30782;30783 30910;30911;30912;30913;30914;30915;30916 30912 7 EDSSSTEFVEK PEKSIVGMTKVKVGKEDSSSTEFVEKRRAA KVGKEDSSSTEFVEKRRAALERYLQRTVKH K E D E K R 0 0 0 1 0 0 3 0 0 0 0 1 0 1 0 3 1 0 0 1 0 0 11 0 1256.5408 O60749;D6RC15 O60749 224 234 SNX2 Sorting nexin-2 yes no 2 0.0089047 39.625 By MS/MS By matching 1 1 1.2938 1.2406 24.948 2 Median NaN NaN NaN 0 0 Median 1.2073 1.0399 NaN 1 0 Median 1.3866 1.4799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4132500 1806600 2325800 0 0 0 2777600 1234500 1543000 1354900 572120 782790 0 0 0 0 0 0 0 0 0 6048 1629 6300 30784;30785 30917 30917 1 EDSVKPGAHLTVK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI SREDSVKPGAHLTVKKIFVGGIKEDTEEYN R E D V K K 1 0 0 1 0 0 1 1 1 0 1 2 0 0 1 1 1 0 0 2 0 0 13 1 1379.7409 P51991 P51991 114 126 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 0.00037169 60.518 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 6 4 13 12 1.0884 1.0375 13.896 40 Median 0.82416 0.82832 14.649 2 0 Median 1.1721 1.0584 22.454 4 0 Median 0.92704 0.99284 3.6362 6 0 Median 1.2399 1.0964 7.1596 4 0 Median 0.85814 0.93913 11.249 12 1 Median 1.2417 1.065 10.882 12 0 Median 569300000 284750000 284550000 2026800 1017900 1008900 16102000 7335600 8766200 102860000 52288000 50575000 27920000 12549000 15372000 347570000 178300000 169270000 72816000 33258000 39558000 6049 2446 6301 30786;30787;30788;30789;30790;30791;30792;30793;30794;30795;30796;30797;30798;30799;30800;30801;30802;30803;30804;30805;30806;30807;30808;30809;30810;30811;30812;30813;30814;30815;30816;30817;30818;30819;30820;30821;30822;30823;30824;30825;30826 30918;30919;30920;30921;30922;30923;30924;30925;30926;30927;30928;30929;30930;30931;30932;30933;30934;30935;30936;30937;30938;30939;30940;30941;30942;30943;30944;30945;30946;30947;30948 30939 31 EDSVKPGAHLTVKK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI REDSVKPGAHLTVKKIFVGGIKEDTEEYNL R E D K K I 1 0 0 1 0 0 1 1 1 0 1 3 0 0 1 1 1 0 0 2 0 0 14 2 1507.8358 P51991 P51991 114 127 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3 0.0003074 54.898 By matching By MS/MS By MS/MS 3 3 4 0.96082 1.0188 17.072 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97724 1.0086 28.302 3 0 Median 1.1848 1.1153 10.848 3 0 Median 0.89448 0.98791 3.7651 4 0 Median NaN NaN NaN 0 0 Median 90376000 46258000 44117000 0 0 0 0 0 0 761830 384060 377770 4645000 2089800 2555200 84969000 43784000 41184000 0 0 0 6050 2446 6302 30827;30828;30829;30830;30831;30832;30833;30834;30835;30836 30949;30950;30951;30952;30953;30954;30955 30952 7 EDTEEHHLRDYFEEYGK GAHVTVKKLFVGGIKEDTEEHHLRDYFEEY TEEHHLRDYFEEYGKIDTIEIITDRQSGKK K E D G K I 0 1 0 2 0 0 5 1 2 0 1 1 0 1 0 0 1 0 2 0 0 0 17 1 2195.9396 P22626;A0A087WUI2 P22626 121 137 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;4 8.467E-05 77.593 By MS/MS By matching By matching 3 1 1 0.97134 1.0556 32.239 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97134 1.0556 41.679 3 0 Median NaN NaN NaN 0 0 Median 0.94768 1.0224 NaN 1 0 Median 1.1692 1.0624 NaN 1 0 Median 27924000 13732000 14192000 0 0 0 0 0 0 24894000 12486000 12408000 0 0 0 2030600 796600 1234000 999930 449350 550580 6051 2103 6303 30837;30838;30839;30840;30841 30956;30957;30958 30958 3 EDTEEHHLRDYFEQYGK GAHLTVKKIFVGGIKEDTEEHHLRDYFEQY TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK K E D G K I 0 1 0 2 0 1 4 1 2 0 1 1 0 1 0 0 1 0 2 0 0 0 17 1 2194.9556 P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;F8VYN5;A0A2R8Y4L2 P09651 114 130 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 3;4 0.0020296 27.85 By MS/MS By MS/MS By matching By matching 3 4 3 2 1.0683 1.0176 11.323 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94163 1.0684 9.0272 3 0 Median 1.1219 1.0588 13.658 4 0 Median 0.83846 0.94094 10.668 3 0 Median 1.114 0.94592 6.05 2 0 Median 95264000 44695000 50569000 0 0 0 0 0 0 79681000 37393000 42288000 5185000 2357600 2827300 8219300 3941300 4278000 2178600 1002800 1175800 6052 1919;365 6304 30842;30843;30844;30845;30846;30847;30848;30849;30850;30851;30852;30853 30959;30960;30961;30962 30959 4 EDTEEYNLR GAHLTVKKIFVGGIKEDTEEYNLRDYFEKY FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K E D L R D 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1167.5044 P51991 P51991 135 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 3 1.1051 0.97418 12.988 9 Median NaN NaN NaN 0 0 Median 1.337 1.1483 NaN 1 0 Median 0.8303 0.86219 3.9778 2 0 Median 1.3361 1.1527 NaN 1 0 Median 0.83201 0.85293 10.713 2 1 Median 1.2233 0.99533 2.3633 3 0 Median 39275000 20005000 19269000 0 0 0 2243400 873200 1370200 17177000 9865800 7310700 3073300 1267600 1805700 8749900 4444100 4305800 8031500 3554600 4476900 6053 2446 6305 30854;30855;30856;30857;30858;30859;30860;30861;30862;30863 30963;30964;30965;30966;30967;30968;30969;30970;30971;30972;30973;30974;30975 30972 13 EDTLLLIGHLER AESLFAWACQSPLGKEDTLLLIGHLERVTV LGKEDTLLLIGHLERVTVEANGSLDAVNLA K E D E R V 0 1 0 1 0 0 2 1 1 1 4 0 0 0 0 0 1 0 0 0 0 0 12 0 1407.7722 Q92621 Q92621 244 255 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 7.709E-06 94.297 By matching By MS/MS By matching 1 2 1 1.0075 1.1191 25.049 3 Median NaN NaN NaN 0 0 Median 1.5697 1.362 NaN 1 0 Median 1.0075 1.1191 NaN 1 0 Median 0.95283 0.82829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3126500 1506500 1620000 0 0 0 652720 284280 368450 2389600 1176500 1213100 84209 45790 38419 0 0 0 0 0 0 6054 3547 6306 30864;30865;30866;30867 30976;30977;30978 30978 3 EDTNNLFSVQFR LTHDDTGARYLHLAREDTNNLFSVQFRTTP LAREDTNNLFSVQFRTTPMDSTGVPHILEH R E D F R T 0 1 2 1 0 1 1 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 12 0 1468.6947 Q5JRX3 Q5JRX3 82 93 PITRM1 Presequence protease, mitochondrial yes yes 2 0.0012088 84.17 By MS/MS 1 1.0968 1.0594 NaN 1 Median 1.0968 1.0594 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6734000 3151000 3583000 6734000 3151000 3583000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6055 3050 6307 30868 30979 30979 1 EDTVQSVKPWLTEIMNNYK NQTFNDGTIVEKYLREDTVQSVKPWLTEIM QSVKPWLTEIMNNYKVLIYNGQLDIIVAAA R E D Y K V 0 0 2 1 0 1 2 0 0 1 1 2 1 0 1 1 2 1 1 2 0 0 19 1 2294.1253 Q9H3G5;H7C0X5 Q9H3G5 361 379 CPVL Probable serine carboxypeptidase CPVL yes no 3 0.034982 13.627 By MS/MS By matching 1 1 1.1957 1.227 62.361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74931 0.7895 NaN 1 0 Median 1.9079 1.9071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2657900 1786800 871030 0 0 0 0 0 0 2535900 1756100 779820 121950 30738 91214 0 0 0 0 0 0 6056 3952 6308 30869;30870 30980 30980 1 EDVATWQQSSLSLR RALGKNSELLVVSAREDVATWQQSSLSLRW REDVATWQQSSLSLRWASRLRAPTSTEANH R E D L R W 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 3 1 1 0 1 0 0 14 0 1618.7951 P78316;E9PFK5 P78316 654 667 NOP14 Nucleolar protein 14 yes no 2 2.0688E-11 128.01 By MS/MS By MS/MS By matching 1 2 1 1.238 1.3229 22.698 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1326 1.2109 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4316 1.5028 5.5081 2 1 Median 1.0666 0.93672 NaN 1 0 Median 15290000 6658000 8632200 0 0 0 0 0 0 4441800 2185600 2256200 0 0 0 10412000 4280600 6131200 436530 191780 244760 6057 2637 6309 30871;30872;30873;30874 30981;30982;30983;30984;30985 30983 5 EDVEVAESPLR LSTVHPASPPLLCTREDVEVAESPLRVLAE LCTREDVEVAESPLRVLAETPDSFEKHIRS R E D L R V 1 1 0 1 0 0 3 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 0 1242.6092 Q99567;J3KMX1 Q99567 510 520 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.00011486 131.44 By MS/MS By MS/MS 1 1 1.0017 0.87461 6.3812 2 Median NaN NaN NaN 0 0 Median 1.0343 0.91497 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97008 0.83602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6682200 3305300 3377000 0 0 0 1256100 596250 659870 0 0 0 5426100 2709000 2717100 0 0 0 0 0 0 6058 3753 6310 30875;30876 30986;30987;30988;30989 30988 4 EDVFVHQTAIK NVRNGYGFINRNDTKEDVFVHQTAIKKNNP NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE K E D I K K 1 0 0 1 0 1 1 0 1 1 0 1 0 1 0 0 1 0 0 2 0 0 11 0 1285.6667 P16989;A0A0D9SEI8;Q9Y2T7;P67809;H0Y449 P67809 82 92 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2 2.2235E-05 111.61 By MS/MS 2 3.4116 2.8901 NaN 1 Median NaN NaN NaN 0 0 Median 3.4116 2.8901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13770000 3120200 10650000 0 0 0 13770000 3120200 10650000 0 0 0 0 0 0 0 0 0 0 0 0 6059 2627;2033 6311 30877;30878 30990;30991 30991 2 EDVFVHQTAIKK NVRNGYGFINRNDTKEDVFVHQTAIKKNNP DTKEDVFVHQTAIKKNNPRKYLRSVGDGET K E D K K N 1 0 0 1 0 1 1 0 1 1 0 2 0 1 0 0 1 0 0 2 0 0 12 1 1413.7616 P16989;A0A0D9SEI8;P67809;H0Y449 P67809 82 93 YBX3;YBX1 Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1 no no 3 0.00022086 59.198 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.1847 1.1203 16.449 6 Median 1.0808 1.0415 NaN 1 0 Median 1.2673 1.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1075 1.0519 NaN 1 0 Median 1.3025 1.3892 NaN 1 0 Median 1.1948 1.0424 25.559 2 0 Median 13606000 5693200 7913200 2784400 1341000 1443400 1687100 623460 1063600 0 0 0 2766400 1227200 1539200 2166100 892850 1273200 4202500 1608700 2593800 6060 2627;2033 6312 30879;30880;30881;30882;30883;30884 30992;30993;30994;30995;30996;30997;30998 30998 7 EDVISSIR LAPKLDPEEMKRKMREDVISSIRNFLIYVA EMKRKMREDVISSIRNFLIYVALLRVTPFI R E D I R N 0 1 0 1 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 8 0 917.48181 Q8N4H5;F8W8Z9;H3BUX3;H0YFG9 Q8N4H5 22 29 TOMM5 Mitochondrial import receptor subunit TOM5 homolog yes no 2 0.030362 38.962 By matching By matching By MS/MS 1 1 1 1.1087 0.94524 7.3746 3 Median 1.0062 0.94524 NaN 1 0 Median 1.2363 0.99993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1087 0.86392 NaN 1 0 Median 12743000 6344400 6399100 7272600 3858300 3414200 2344800 993600 1351200 0 0 0 0 0 0 0 0 0 3126100 1492400 1633600 6061 3373 6313 30885;30886;30887 30999 30999 1 EDVIWELLNHAQEHFGK MVPSHAVVARTVGGKEDVIWELLNHAQEHF VIWELLNHAQEHFGKDKPDNFQLFQSPHGK K E D G K D 1 0 1 1 0 1 3 1 2 1 2 1 0 1 0 0 0 1 0 1 0 0 17 0 2064.0065 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 283 299 yes no 3 1.1322E-05 61.641 By MS/MS 2 0.048993 0.042474 25.926 2 Median NaN NaN NaN 0 0 Median 0.048993 0.042474 25.926 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12313000 11768000 545120 0 0 0 12313000 11768000 545120 0 0 0 0 0 0 0 0 0 0 0 0 + 6062 769 6314 30888;30889 31000;31001 31001 2 EDVLTLLLPVMGDSK GSIFGLGLAYAGSNREDVLTLLLPVMGDSK EDVLTLLLPVMGDSKSSMEVAGVTALACGM R E D S K S 0 0 0 2 0 0 1 1 0 0 4 1 1 0 1 1 1 0 0 2 0 0 15 0 1628.8695 Q13200 Q13200 495 509 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.0076073 32.946 By matching By MS/MS By matching 1 1 1 0.99706 0.88389 21.235 3 Median 1.2324 1.2389 NaN 1 0 Median 0.99706 0.88389 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95907 0.83723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2270000 1025800 1244300 437360 237450 199920 1774400 761320 1013100 0 0 0 58237 26999 31238 0 0 0 0 0 0 6063 2796 6315 30890;30891;30892 31002 31002 1 EDVNEAIR STALARLRMVDVVEKEDVNEAIRLMEMSKD MVDVVEKEDVNEAIRLMEMSKDSLLGDKGQ K E D I R L 1 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 944.45632 P33993 P33993 628 635 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0048619 79.116 By MS/MS 1 0.98506 0.85627 NaN 1 Median NaN NaN NaN 0 0 Median 0.98506 0.85627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2039300 1019900 1019400 0 0 0 2039300 1019900 1019400 0 0 0 0 0 0 0 0 0 0 0 0 6064 2225 6316 30893 31003;31004 31003 2 EDVWLPLMSYR VYLEKFMTFQMSLRREDVWLPLMSYRNSLL SLRREDVWLPLMSYRNSLLAGGDDDTMSVI R E D Y R N 0 1 0 1 0 0 1 0 0 0 2 0 1 0 1 1 0 1 1 1 0 0 11 0 1407.6857 Q8N3U4 Q8N3U4 1035 1045 STAG2 Cohesin subunit SA-2 yes yes 2 0.033498 30.254 By MS/MS By matching 1 1 0.8445 0.79002 5.9914 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79924 0.82421 NaN 1 0 Median 0.89231 0.75725 NaN 1 0 Median 934680 473060 461620 0 0 0 0 0 0 0 0 0 0 0 0 809420 403460 405970 125260 69603 55655 6065 3369 6317 30894;30895 31005 31005 1 EDYKFHHTFSTEIAK DPAYQQYQDAANNLREDYKFHHTFSTEIAK EDYKFHHTFSTEIAKFLKVSQGQLVVMQPE R E D A K F 1 0 0 1 0 0 2 0 2 1 0 2 0 2 0 1 2 0 1 0 0 0 15 1 1851.8792 P13667;A0A499FI48 P13667 332 346 PDIA4 Protein disulfide-isomerase A4 yes no 4 0.0038554 27.58 By MS/MS By MS/MS 2 1 0.88399 0.91894 5.8767 3 Plateau 0.90014 0.88929 8.1336 2 0 Median NaN NaN NaN 0 0 Median 0.77823 0.87089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21965000 11024000 10941000 13873000 6496000 7377000 0 0 0 8091800 4527500 3564300 0 0 0 0 0 0 0 0 0 6066 1993 6318 30896;30897;30898 31006;31007;31008 31007 3 EDYLYAVR YITAFFFAGYYLVKREDYLYAVRDREMFGY GYYLVKREDYLYAVRDREMFGYMKLHPEDF R E D V R D 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 8 0 1027.4975 O95298;E9PM14;A0A087WUM3;E9PQ53 O95298 78 85 NDUFC2;KCTD14;NDUFC2-KCTD14 NADH dehydrogenase [ubiquinone] 1 subunit C2;NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2 yes no 2 0.0021953 114.59 By MS/MS By MS/MS By matching 1 2 1 1.4196 1.2909 41.896 3 Plateau 0.96739 0.94139 NaN 1 0 Median 2.0831 1.7703 NaN 1 0 Median 0.79165 0.80126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19616000 7422200 12194000 7615700 3743800 3871900 9619200 2268600 7350700 2381100 1409800 971300 0 0 0 0 0 0 0 0 0 6067 1762 6319 30899;30900;30901;30902 31009;31010;31011 31011 3 EEAENTLQSFR IMRLREKLQEEMLQREEAENTLQSFRQDVD MLQREEAENTLQSFRQDVDNASLARLDLER R E E F R Q 1 1 1 0 0 1 3 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1322.6103 P08670;B0YJC4;B0YJC5 P08670 197 207 VIM Vimentin yes no 2 2.5545E-79 258 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 3 5 1.0518 0.95068 21.222 16 Median 1.0017 0.92974 NaN 1 0 Median 1.4945 1.2771 25.97 2 0 Median 1.0659 1.038 7.1745 2 0 Median 1.1266 0.96351 9.4436 3 0 Median 0.9025 0.93912 21.151 3 1 Median 0.93059 0.76173 11.803 5 0 Median 553350000 255340000 298010000 68970000 35263000 33707000 74408000 31088000 43320000 142780000 65415000 77370000 86396000 38220000 48176000 114560000 53182000 61378000 66229000 32167000 34062000 6068 1907 6320 30903;30904;30905;30906;30907;30908;30909;30910;30911;30912;30913;30914;30915;30916;30917;30918 31012;31013;31014;31015;31016;31017;31018;31019;31020;31021;31022;31023;31024;31025;31026;31027;31028;31029;31030;31031;31032;31033;31034 31029 23 EEAENTLQSFRQDVDNASLAR IMRLREKLQEEMLQREEAENTLQSFRQDVD LQSFRQDVDNASLARLDLERKVESLQEEIA R E E A R L 3 2 2 2 0 2 3 0 0 0 2 0 0 1 0 2 1 0 0 1 0 0 21 1 2392.1255 P08670;B0YJC4;B0YJC5 P08670 197 217 VIM Vimentin yes no 3 1.1219E-06 45.347 By MS/MS By MS/MS By matching 1 1 1 1.0795 1.1763 18.041 3 Plateau 1.1028 1.1137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0795 1.1763 NaN 1 0 Median 0.95059 0.84042 NaN 1 0 Median 33592000 15019000 18573000 7127300 2782900 4344500 0 0 0 0 0 0 0 0 0 24197000 11180000 13017000 2268100 1056600 1211400 6069 1907 6321 30919;30920;30921 31035;31036 31035 2 EEAGGEAAAAAAAER PPPPSELKKAEQQQREEAGGEAAAAAAAER EEAGGEAAAAAAAERGEMKAAAGQESEGPA R E E E R G 8 1 0 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 1372.6219 O14497 O14497 33 47 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 2.1519E-09 102.66 By MS/MS By MS/MS 1 1 0.97009 0.95573 2.4535 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85068 0.9393 NaN 1 0 Median 1.1063 0.97246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5754100 2925800 2828400 0 0 0 0 0 0 4432800 2317000 2115800 1321400 608790 712580 0 0 0 0 0 0 6070 1480 6322 30922;30923 31037;31038;31039 31038 3 EEAGGGISEEEAAQYDR ______________________________ AGGGISEEEAAQYDRQIRLWGLEAQKRLRA K E E D R Q 3 1 0 1 0 1 5 3 0 1 0 0 0 0 0 1 0 0 1 0 0 0 17 0 1809.7653 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0R375 Q9UBE0 5 21 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 1.6225E-17 117.93 By MS/MS By MS/MS 1 2 0.91761 0.88981 7.7116 2 Median NaN NaN NaN 0 0 Median 1.0834 0.93968 NaN 1 0 Median 0.77717 0.84259 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7354600 3875100 3479500 0 0 0 4173200 1900200 2273000 3181400 1974800 1206600 0 0 0 0 0 0 0 0 0 6071 4237 6323 30924;30925;30926 31040;31041;31042;31043 31041 4 EEAIEHNYGGHDDDLSVR KWCKFDDDVVSRCTKEEAIEHNYGGHDDDL IEHNYGGHDDDLSVRHCTNAYMLVYIRESK K E E V R H 1 1 1 3 0 0 3 2 2 1 1 0 0 0 0 1 0 0 1 1 0 0 18 0 2054.893 Q93009;H3BND8;F5H2X1 Q93009 491 508 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3;4 1.4477E-14 116.06 By matching By MS/MS By MS/MS By MS/MS 2 2 2 4 1.014 0.97318 22.718 10 Median 0.9416 0.92479 10.001 2 0 Median 1.1575 0.97047 0.52627 2 0 Median 0.94701 1.0414 9.7124 2 0 Median 1.3825 1.175 33.951 4 1 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63500000 29654000 33846000 4882400 2477100 2405300 17272000 7968300 9304000 20042000 9488000 10554000 21303000 9720500 11583000 0 0 0 0 0 0 6072 3574 6324 30927;30928;30929;30930;30931;30932;30933;30934;30935;30936 31044;31045;31046;31047;31048;31049;31050;31051;31052 31051 9 EEAIQNFK EQTKEIDREREQHKREEAIQNFKALLSDMV EREQHKREEAIQNFKALLSDMVRSSDVSWS R E E F K A 1 0 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 977.48181 O14776;G3V220 O14776 897 904 TCERG1 Transcription elongation regulator 1 yes no 2 0.0034479 95.62 By MS/MS By MS/MS 1 1 1.0064 0.97592 2.7667 2 Median NaN NaN NaN 0 0 Median 1.0884 0.95701 NaN 1 1 Median 0.93063 0.9952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10704000 5344300 5359800 0 0 0 2120700 1072600 1048100 8583500 4271700 4311700 0 0 0 0 0 0 0 0 0 6073 1494 6325 30937;30938 31053;31054 31053 2 EEAQAEIEQYR SEARKRKNRRLKQAKEEAQAEIEQYRLQRE KQAKEEAQAEIEQYRLQREKEFKAKEAAAL K E E Y R L 2 1 0 0 0 2 4 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 11 0 1364.6208 O75348 O75348 38 48 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 2 0.00011486 131.44 By MS/MS By matching By MS/MS 1 1 1 1.1228 1.0696 10.588 3 Plateau 1.0093 0.98598 NaN 1 0 Median 1.1228 0.95114 NaN 1 0 Median 1.1444 1.1602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18760000 8532900 10228000 7994500 3893300 4101200 2706700 1179300 1527400 8059200 3460300 4599000 0 0 0 0 0 0 0 0 0 6074 1660 6326 30939;30940;30941 31055;31056;31057;31058 31057 4 EEAQALEDLTGFK TENLTGSKRRPQTPKEEAQALEDLTGFKEL PKEEAQALEDLTGFKELFQTPGHTEEAVAA K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 0 1449.6987 P46013 P46013 1338 1350 MKI67 Antigen KI-67 yes yes 2 2.3822E-06 120.09 By matching By MS/MS By matching 1 2 4 1.1108 1.0365 27.247 7 Median NaN NaN NaN 0 0 Median 2.3141 2.0129 NaN 1 0 Median 1.0376 1.1327 12.545 2 0 Median 1.0919 0.96484 12.499 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17508000 8444400 9063600 0 0 0 910050 233010 677040 14283000 7279100 7004100 2314800 932340 1382400 0 0 0 0 0 0 6075 2335 6327 30942;30943;30944;30945;30946;30947;30948 31059;31060;31061;31062 31060 4 EEAQSLEDLAGFK AARVTGMKKWPRTPKEEAQSLEDLAGFKEL PKEEAQSLEDLAGFKELFQTPGPSEESMTD K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1435.6831 P46013 P46013 1094 1106 MKI67 Antigen KI-67 yes no 2 0.00045482 73.067 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.2356 1.1527 28.84 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2763 1.3915 11.076 2 0 Median 1.0424 0.91597 16.952 2 0 Median 1.6883 1.7825 NaN 1 1 Median 1.2666 1.0133 NaN 1 0 Median 29252000 11803000 17449000 0 0 0 0 0 0 24806000 10099000 14707000 1481500 657980 823560 2574100 868660 1705400 390810 177910 212890 6076 2335 6328 30949;30950;30951;30952;30953;30954 31063;31064;31065;31066 31065 4 EEASDYLELDTIK GNTLGRGTTITLVLKEEASDYLELDTIKNL LKEEASDYLELDTIKNLVKKYSQFINFPIY K E E I K N 1 0 0 2 0 0 3 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 13 0 1524.7195 P14625;Q96GW1;A0A1W2PRR1 P14625 253 265 HSP90B1 Endoplasmin yes no 2 1.3713E-06 115.18 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.1007 1.0682 17.402 7 Median 1.0965 1.061 0.94805 2 1 Median 1.3618 1.1918 7.3786 3 0 Median 0.79692 0.87898 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70255 0.79078 NaN 1 0 Median NaN NaN NaN 0 0 Median 54396000 25226000 29170000 20683000 9664900 11018000 27288000 11595000 15692000 5140500 3310400 1830100 0 0 0 1285100 655380 629680 0 0 0 6077 2006 6329 30955;30956;30957;30958;30959;30960;30961 31067;31068;31069;31070;31071 31068 5 EEASGSSVTAEEAK FWEIVVQDGITLITKEEASGSSVTAEEAKK KEEASGSSVTAEEAKKFLAPKDKPSGDTAA K E E A K K 3 0 0 0 0 0 4 1 0 0 0 1 0 0 0 3 1 0 0 1 0 0 14 0 1393.6209 P13010 P13010 689 702 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 7.8822E-09 113.22 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0444 0.96435 19.372 4 Median NaN NaN NaN 0 0 Median 1.2188 1.0664 NaN 1 0 Median 0.90146 0.8872 NaN 1 0 Median 1.2099 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80868 0.70266 NaN 1 0 Median 60219000 29329000 30890000 0 0 0 4212400 1733400 2478900 50890000 25378000 25512000 4989700 2140000 2849700 0 0 0 127370 78053 49317 6078 1986 6330 30962;30963;30964;30965 31072;31073;31074;31075;31076;31077 31074 6 EEASGSSVTAEEAKK FWEIVVQDGITLITKEEASGSSVTAEEAKK EEASGSSVTAEEAKKFLAPKDKPSGDTAAV K E E K K F 3 0 0 0 0 0 4 1 0 0 0 2 0 0 0 3 1 0 0 1 0 0 15 1 1521.7158 P13010 P13010 689 703 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.000445 67.153 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1.1305 1.1402 13.594 9 Median 1.0872 1.1286 5.6038 2 0 Median 1.2954 1.2514 13.161 2 0 Median 0.91112 1.016 13.23 3 0 Median 1.278 1.2485 1.8648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23349000 11259000 12090000 1726300 807840 918490 1759400 803960 955400 17826000 8799400 9027000 2037100 847580 1189600 0 0 0 0 0 0 6079 1986 6331 30966;30967;30968;30969;30970;30971;30972;30973;30974 31078;31079;31080;31081;31082;31083;31084;31085 31081 8 EEASTSLPTKPTQGASSASEPQEAPPKPAEDK ALTPTPAPTTTTATREEASTSLPTKPTQGA ASEPQEAPPKPAEDKKKD____________ R E E D K K 5 0 0 1 0 2 5 1 0 0 1 3 0 0 6 5 3 0 0 0 0 0 32 2 3264.5634 O96005 O96005 635 666 CLPTM1 Cleft lip and palate transmembrane protein 1 yes yes 3;4 1.0356E-57 113.75 By MS/MS By MS/MS 4 3 0.37027 0.41928 19.481 7 Median 0.42564 0.46602 13.939 4 1 Median 0.33153 0.38127 11.734 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119500000 92631000 26866000 25486000 17321000 8164700 94011000 75309000 18701000 0 0 0 0 0 0 0 0 0 0 0 0 6080 1805 6332 30975;30976;30977;30978;30979;30980;30981 31086;31087;31088;31089;31090;31091;31092;31093 31090 8 EEASWQQSHHQFR IDGPRSAQVAQSLLKEEASWQQSHHQFRKR LKEEASWQQSHHQFRKRLSEEYTFYPDAVS K E E F R K 1 1 0 0 0 3 2 0 2 0 0 0 0 1 0 2 0 1 0 0 0 0 13 0 1668.7393 Q9NU22 Q9NU22 3371 3383 MDN1 Midasin yes yes 3;4 0.00024033 62.924 By MS/MS By MS/MS By MS/MS 2 2 2 1.3198 1.1773 14.964 6 Median NaN NaN NaN 0 0 Median 1.5548 1.318 24.437 2 0 Median 0.97823 1.0989 12.648 2 0 Median 1.3798 1.2003 5.6387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7740400 3295700 4444700 0 0 0 2705700 939070 1766600 2403300 1197500 1205800 2631400 1159100 1472200 0 0 0 0 0 0 6081 4112 6333 30982;30983;30984;30985;30986;30987 31094;31095;31096;31097;31098;31099;31100 31099 7 EEAYELVR TLAMKGLTLNCLGKKEEAYELVRRGLRNDL LNCLGKKEEAYELVRRGLRNDLKSHVCWHV K E E V R R 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1007.4924 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 63 70 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.011907 65.038 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.4387 1.2414 16.777 4 Median 1.5764 1.5213 NaN 1 0 Median 1.4037 1.2131 NaN 1 0 Median 0.94834 1.0113 NaN 1 1 Median 1.4746 1.2704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21743000 8293000 13450000 7808300 2017300 5791000 6802500 2815700 3986800 5663800 3037100 2626700 1468300 422870 1045400 0 0 0 0 0 0 6082 213 6334 30988;30989;30990;30991 31101;31102;31103;31104;31105 31101 5 EEDEPEER SGGVNGGEEQGLGKREEDEPEERSGDETPG EQGLGKREEDEPEERSGDETPGSEVPGDKA R E E E R S 0 1 0 1 0 0 5 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 8 0 1031.4043 Q1KMD3;H3BQZ7 Q1KMD3 153 160 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0052175 77.058 By matching By matching By MS/MS 1 2 2 0.64494 0.68701 10.281 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59746 0.61445 NaN 1 0 Median 0.83711 0.714 5.0128 2 0 Median 0.60552 0.62658 13.02 2 0 Median NaN NaN NaN 0 0 Median 2299200 1317900 981290 0 0 0 0 0 0 201390 125180 76212 290470 153260 137210 1807400 1039500 767870 0 0 0 6083 3002 6335 30992;30993;30994;30995;30996 31106;31107 31106 2 EEDGSLSLDGADSTGVVAK EEWSCSLCHVLPDLKEEDGSLSLDGADSTG SLSLDGADSTGVVAKLSPANQRKCERVLLA K E E A K L 2 0 0 3 0 0 2 3 0 0 2 1 0 0 0 3 1 0 0 2 0 0 19 0 1848.8589 Q13263;M0R0K9 Q13263 677 695 TRIM28 Transcription intermediary factor 1-beta yes no 2 7.6974E-08 78.486 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 0.91764 0.82776 4.2727 6 Median 0.85667 0.83048 NaN 1 0 Median 0.93104 0.81188 3.3006 2 0 Median 0.82565 0.89153 NaN 1 0 Median 0.94509 0.80923 2.7399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46573000 24555000 22019000 8732500 4648400 4084100 3376700 1785200 1591500 28538000 15068000 13471000 5925700 3053600 2872200 0 0 0 0 0 0 6084 2802 6336 30997;30998;30999;31000;31001;31002 31108;31109;31110;31111;31112;31113;31114;31115 31109 8 EEDSAIPITVPGR STNGSSITPAPKIKKEEDSAIPITVPGRLP KKEEDSAIPITVPGRLPVSLAGHPVVAAQA K E E G R L 1 1 0 1 0 0 2 1 0 2 0 0 0 0 2 1 1 0 0 1 0 0 13 0 1382.7042 Q99856 Q99856 400 412 ARID3A AT-rich interactive domain-containing protein 3A yes yes 2 0.053273 24.855 By MS/MS 2 1.1689 0.99747 20.852 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1689 0.99747 20.852 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3415500 1633000 1782500 0 0 0 0 0 0 0 0 0 3415500 1633000 1782500 0 0 0 0 0 0 6085 3772 6337 31003;31004 31116 31116 1 EEEAGGFIANLEPVSLADR GNNGFIWIYPTPEHKEEEAGGFIANLEPVS GGFIANLEPVSLADREVISRLRNCIISLVT K E E D R E 3 1 1 1 0 0 4 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 19 0 2015.98 Q13868;A3KFL5;A3KFL2 Q13868 213 231 EXOSC2 Exosome complex component RRP4 yes no 2 0.056111 29.689 By MS/MS 1 0.81372 0.802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81372 0.802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3041500 1734900 1306600 0 0 0 0 0 0 3041500 1734900 1306600 0 0 0 0 0 0 0 0 0 6086 2843 6338 31005 31117 31117 1 EEEAIQLDGLNASQIR KSREGSRTDDEVVQREEEAIQLDGLNASQI EEAIQLDGLNASQIRELREKSEKFAFQAEV R E E I R E 2 1 1 1 0 2 3 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1784.8905 P14625;Q96GW1;A0A1W2PRR1 P14625 52 67 HSP90B1 Endoplasmin yes no 2 0.0032373 48.741 By MS/MS 1 1.3782 1.3311 NaN 1 Median 1.3782 1.3311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6891700 2300700 4591000 6891700 2300700 4591000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6087 2006 6339 31006 31118 31118 1 EEEATEWQHK FTAKIALLEEAKKKKEEEATEWQHKAFAAQ AKKKKEEEATEWQHKAFAAQEDLEKTKEEL K E E H K A 1 0 0 0 0 1 4 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 10 0 1285.5575 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 439 448 RDX Radixin yes no 2;3 0.033171 27.254 By matching By matching By MS/MS 1 2 2 0.74695 0.79876 12.081 5 Median 0.66393 0.66654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71928 0.76843 5.4738 2 0 Median 1.0133 0.88114 3.3722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4145800 2182400 1963400 257660 131300 126360 0 0 0 2105800 1134100 971720 1782300 916970 865350 0 0 0 0 0 0 6088 2235 6340 31007;31008;31009;31010;31011 31119;31120;31121 31120 3 EEECHFYAGGQVYPGEASR GAVQGWETEERPRTREEECHFYAGGQVYPG HFYAGGQVYPGEASRVSVADHSLHLSKAKI R E E S R V 2 1 0 0 1 1 4 3 1 0 0 0 0 1 1 1 0 0 2 1 0 0 19 0 2184.9171 Q13162;A6NG45 Q13162 48 66 PRDX4 Peroxiredoxin-4 yes no 3 1.2834E-13 103.5 By MS/MS 1 1.1626 0.98312 NaN 1 Median NaN NaN NaN 0 0 Median 1.1626 0.98312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7378500 3326900 4051600 0 0 0 7378500 3326900 4051600 0 0 0 0 0 0 0 0 0 0 0 0 6089 2793 6341 31012 31122;31123 31123 2 EEEDREVAAAVR RGAQQSRRGSWRYKREEEDREVAAAVRASV YKREEEDREVAAAVRASVAAQQQEEARRSE R E E V R A 3 2 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 12 1 1372.6583 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 339 350 ZNF598 Zinc finger protein 598 yes no 3 0.00086539 48.004 By MS/MS 3 0.90463 0.88563 96.563 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90463 0.88563 96.563 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5260300 2988400 2272000 0 0 0 0 0 0 0 0 0 5260300 2988400 2272000 0 0 0 0 0 0 6090 3278 6342 31013;31014;31015 31124;31125 31124 2 EEEEFNTGPLSVLTQSVK NKPKSEMTPEELQKREEEEFNTGPLSVLTQ EFNTGPLSVLTQSVKNNTQVLINCRNNKKL R E E V K N 0 0 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 18 0 2005.9844 P62316;K7ERG4 P62316 20 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2;3 4.6798E-52 219.42 By MS/MS By MS/MS By matching 2 2 2 1.0665 0.93371 28.486 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85178 0.82449 3.3052 2 0 Median NaN NaN NaN 0 0 Median 1.243 1.4443 18.407 2 1 Median 1.1355 0.92968 14.9 2 0 Median 47290000 24750000 22540000 0 0 0 0 0 0 43452000 22910000 20542000 0 0 0 3063600 1479900 1583700 774470 360160 414320 6091 2586 6343 31016;31017;31018;31019;31020;31021 31126;31127;31128;31129;31130;31131;31132;31133;31134;31135;31136;31137 31130 12 EEEELAR EEILRRQQEEERKRREEEELARRKQEEALR QEEERKRREEEELARRKQEEALRRQREQEI R E E A R R 1 1 0 0 0 0 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 874.40323 Q6Y7W6;I1E4Y6;E7ESB6 Q6Y7W6 781 787 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 2 0.029918 50.025 By MS/MS 1 1.1654 1.0289 NaN 1 Median NaN NaN NaN 0 0 Median 1.1654 1.0289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 887420 398340 489080 0 0 0 887420 398340 489080 0 0 0 0 0 0 0 0 0 0 0 0 6092 3192 6344 31022 31138 31138 1 EEEEPMDTSSVTHTEHYK ______________________________ EPMDTSSVTHTEHYKTLIEAGLPQKVAERL K E E Y K T 0 0 0 1 0 0 5 0 2 0 0 1 1 0 1 2 3 0 1 1 0 0 18 0 2147.8953 O43390 O43390 14 31 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 3;4 1.4561E-06 69.522 By MS/MS By MS/MS By matching 2 1 1 0.81688 0.85598 10.646 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73835 0.7754 3.4607 2 0 Median 1.0797 0.93609 NaN 1 0 Median 0.89282 0.92209 NaN 1 0 Median NaN NaN NaN 0 0 Median 16061000 8209200 7851800 0 0 0 0 0 0 10439000 5330200 5108800 3062500 1413300 1649200 2559600 1465700 1093800 0 0 0 6093 1568 6345 31023;31024;31025;31026 31139;31140;31141;31142;31143;31144 31143 6 EEEEQQEGGFASPR EALANREREKENSKREEEEQQEGGFASPRT REEEEQQEGGFASPRTGKGKWKRKSAGGGP R E E P R T 1 1 0 0 0 2 5 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 14 0 1591.675 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 641 654 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 6.4816E-06 93.258 By MS/MS By MS/MS 1 1 0.7136 0.68624 8.5151 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67913 0.72883 NaN 1 0 Median 0.74981 0.64614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5983300 3504100 2479300 0 0 0 0 0 0 2824100 1607700 1216400 3159200 1896300 1262900 0 0 0 0 0 0 6094 20 6346 31027;31028 31145;31146;31147;31148 31147 4 EEEGTGVVHQAPYFGAEDYR KENGAFTVLVDNYVKEEEGTGVVHQAPYFG GVVHQAPYFGAEDYRVCMDFNIIRKDSLPV K E E Y R V 2 1 0 1 0 1 4 3 1 0 0 0 0 1 1 0 1 0 2 2 0 0 20 0 2252.9974 P41252;A0A0A0MSX9;J3KR24 P41252 315 334 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.056209 16.716 By MS/MS By MS/MS 1 1 0.96192 0.81946 3.0972 2 Median NaN NaN NaN 0 0 Median 0.98293 0.83761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94136 0.80171 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5275700 2616700 2659000 0 0 0 3328600 1550000 1778600 0 0 0 1947100 1066700 880430 0 0 0 0 0 0 6095 2302 6347 31029;31030 31149;31150 31150 2 EEEIAALVIDNGSGMCK ______________________________ EIAALVIDNGSGMCKAGFAGDDAPRAVFPS M E E C K A 2 0 1 1 1 0 3 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 17 0 1834.8441 P63261;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;K7EM38 P63261 2 18 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes no 2 3.0497E-12 131.69 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.103 1.0044 13.448 4 Median 1.0036 0.97664 NaN 1 0 Median 1.2123 1.0329 NaN 1 0 Median 0.85602 0.95592 NaN 1 0 Median 1.466 1.2825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18925000 8597400 10328000 279090 136310 142780 16864000 7545300 9318300 1725300 887100 838230 56999 28655 28344 0 0 0 0 0 0 6096 2625 6348 31031;31032;31033;31034 31151;31152;31153;31154 31153 4 EEEIEAQEK KEREAKEMHERKRQREEEIEAQEKAKRERE ERKRQREEEIEAQEKAKREREWQKNFEESR R E E E K A 1 0 0 0 0 1 5 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 9 0 1103.4982 O75937;S4R3J5 O75937 193 201 DNAJC8 DnaJ homolog subfamily C member 8 yes no 2 0.020328 39.022 By matching By matching By MS/MS 1 1 1 0.98905 0.96601 7.8281 3 Plateau NaN NaN NaN 0 0 Median 0.98905 0.83829 NaN 1 0 Median 0.87304 0.84966 NaN 1 0 Median 1.135 0.96601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1726200 856970 869280 0 0 0 337190 193350 143840 338750 194010 144740 1050300 469610 580700 0 0 0 0 0 0 6097 1709 6349 31035;31036;31037 31155;31156 31156 2 EEEIEVDSR KKGEKRASSPFRRVREEEIEVDSRVADNSF PFRRVREEEIEVDSRVADNSFDAKRGAAGD R E E S R V 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 9 0 1104.4935 A0A0A0MRM9;Q14978 A0A0A0MRM9 639 647 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0048762 61.679 By MS/MS By MS/MS 1 1 0.9086 0.97039 6.5576 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94801 1.0164 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87084 0.92642 NaN 1 0 Median NaN NaN NaN 0 0 Median 4591700 2468600 2123200 0 0 0 0 0 0 2676000 1315400 1360600 0 0 0 1915800 1153200 762570 0 0 0 6098 165 6350 31038;31039 31157;31158 31158 2 EEEITLYPDK NRRSFKCIWLNSQFREEEITLYPDKHGCVR NSQFREEEITLYPDKHGCVRDLLEECKKAV R E E D K H 0 0 0 1 0 0 3 0 0 1 1 1 0 0 1 0 1 0 1 0 0 0 10 0 1235.5921 Q93009;H3BND8 Q93009 905 914 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.039044 45.74 By MS/MS 1 0.88037 0.75265 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88037 0.75265 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2648500 1300500 1347900 0 0 0 0 0 0 0 0 0 2648500 1300500 1347900 0 0 0 0 0 0 6099 3574 6351 31040 31159 31159 1 EEEKLELQK RVFSLSSEFKNITVREEEKLELQKLLERVP KNITVREEEKLELQKLLERVPIPVKESIEE R E E Q K L 0 0 0 0 0 1 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1144.5976 O75643;A0A494C1A5 O75643 1031 1039 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.4818E-05 156.75 By MS/MS By matching By MS/MS 3 1 1 1.1243 1.1372 54.743 5 Median NaN NaN NaN 0 0 Median 0.97463 0.9151 67.752 3 1 Median 1.1243 1.4854 NaN 1 0 Median 1.2096 1.1372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12731000 5896700 6834300 0 0 0 3126800 1580300 1546500 6253600 2854800 3398800 3350600 1461600 1889000 0 0 0 0 0 0 6100 1688 6352 31041;31042;31043;31044;31045 31160;31161;31162 31162 3 EEELNAIR VEELLETGLIQVATKEEELNAIRTENSSLT LIQVATKEEELNAIRTENSSLTKEVQDLKA K E E I R T 1 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 Q86UP2;G3V4Y7;H0YJZ8 Q86UP2 762 769 KTN1 Kinectin yes no 2 0.00064003 100.07 By MS/MS 1 0.98167 0.82303 NaN 1 Median NaN NaN NaN 0 0 Median 0.98167 0.82303 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8191800 4236700 3955100 0 0 0 8191800 4236700 3955100 0 0 0 0 0 0 0 0 0 0 0 0 6101 3280 6353 31046 31163 31163 1 EEELQAALAR LQAQIAELKMQLAKKEEELQAALARVEEEA QLAKKEEELQAALARVEEEAAQKNMALKKI K E E A R V 3 1 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1128.5775 P35579;Q7Z406;A0A0C4DFM8 P35579 1082 1091 MYH9;MYH14 Myosin-9;Myosin-14 no no 2 0.0013008 106.36 By MS/MS 1 0.6149 0.52592 NaN 1 Median NaN NaN NaN 0 0 Median 0.6149 0.52592 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4693000 2858700 1834300 0 0 0 4693000 2858700 1834300 0 0 0 0 0 0 0 0 0 0 0 0 6102 2244;3242 6354 31047 31164 31164 1 EEELREYQER LKEREERERAERAKREEELREYQERVKKLE ERAKREEELREYQERVKKLEEVERKKRQRE R E E E R V 0 2 0 0 0 1 5 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 10 1 1379.6317 Q14152 Q14152 838 847 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 0.00022959 104.52 By MS/MS By MS/MS By MS/MS By matching 4 2 3 1 0.97779 1.0245 17.235 10 Median 0.86105 0.93537 13.11 4 0 Median 1.2214 1.2052 22.177 2 0 Median 0.92925 1.1302 22.817 3 0 Median 1.1556 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19256000 9596100 9659900 13394000 6766700 6627800 2261600 1066900 1194700 3044800 1557500 1487300 555010 205000 350010 0 0 0 0 0 0 6103 2860 6355 31048;31049;31050;31051;31052;31053;31054;31055;31056;31057 31165;31166;31167;31168;31169;31170;31171;31172 31166 8 EEEMGEEEEVER NEYLSSFKVAQYVVREEEMGEEEEVEREII VVREEEMGEEEEVEREIIKQEESVDPDYWE R E E E R E 0 1 0 0 0 0 8 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 12 0 1493.5828 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y5M9;A0A2R8YE38 Q14839 1289 1300 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 3.7563E-05 145.89 By MS/MS By MS/MS 1 3 0.99358 0.97612 21.633 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0035 1.1147 NaN 1 0 Median 1.3897 1.2174 24.275 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6226000 2991400 3234700 0 0 0 0 0 0 2931100 1446700 1484300 3295000 1544600 1750300 0 0 0 0 0 0 6104 246 6356;6357 31058;31059;31060;31061 31173;31174;31175;31176;31177 31176 100 5 EEEMMIR RKEMQLRQEEERRRREEEMMIRQREMEEQM QEEERRRREEEMMIRQREMEEQMRRQREES R E E I R Q 0 1 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 7 0 936.40449 P23246;H0Y9K7 P23246 575 581 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.0081656 86.512 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.2225 1.1329 17.245 6 Median NaN NaN NaN 0 0 Median 1.282 1.1099 NaN 1 0 Median 1.0928 1.1563 NaN 1 0 Median 1.3395 1.1542 8.5358 2 1 Median 0.93559 0.96219 31.702 2 1 Median NaN NaN NaN 0 0 Median 55304000 23719000 31586000 0 0 0 4808500 2023100 2785400 24882000 10484000 14398000 11470000 4595200 6875100 14144000 6616700 7526900 0 0 0 6105 2107 6358;6359 31062;31063;31064;31065;31066;31067 31178;31179;31180;31181;31182;31183;31184;31185 31184 868 8 EEENASVIDSAELQAYPALVVEK AYMTLADFCDQQLRKEEENASVIDSAELQA DSAELQAYPALVVEKMLKALKLNSNEARLK K E E E K M 4 0 1 1 0 1 5 0 0 1 2 1 0 0 1 2 0 0 1 3 0 0 23 0 2503.233 P78527 P78527 3427 3449 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.017381 14.762 By MS/MS By matching 1 1 1.102 1.0512 4.3247 2 Median 1.0915 1.0838 NaN 1 0 Median 1.1125 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5439800 2756600 2683200 4128300 2162400 1965800 1311500 594150 717370 0 0 0 0 0 0 0 0 0 0 0 0 6106 2647 6360 31068;31069 31186 31186 1 EEETEAAIGAPPTATEGPETKPVLMALAEGPGAEGPR GTPGAPPLAGMAIVKEEETEAAIGAPPTAT VLMALAEGPGAEGPRLASPSGSTSSGLEVV K E E P R L 7 1 0 0 0 0 8 5 0 1 2 1 1 0 6 0 4 0 0 1 0 0 37 1 3672.7829 Q13263;M0R0K9 Q13263 555 591 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.013886 21.715 By MS/MS 1 0.28495 0.32379 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28495 0.32379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3012500 2535300 477170 0 0 0 0 0 0 3012500 2535300 477170 0 0 0 0 0 0 0 0 0 6107 2802 6361 31070 31187 31187 1 EEETLDTIK AQKVVPDPNVIKLKREEETLDTIKQYYVLC VIKLKREEETLDTIKQYYVLCSSRDEKFQA R E E I K Q 0 0 0 1 0 0 3 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1076.5237 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 299 307 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 0.02298 53.775 By MS/MS 1 0.90769 0.77356 NaN 1 Median NaN NaN NaN 0 0 Median 0.90769 0.77356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4114500 2242000 1872500 0 0 0 4114500 2242000 1872500 0 0 0 0 0 0 0 0 0 0 0 0 6108 4121;1225 6362 31071 31188 31188 1 EEETSIDVAGKPNEVTK LAKEQKANEQKKESKEEETSIDVAGKPNEV ETSIDVAGKPNEVTKAAESPDQKDTDGGPK K E E T K A 1 0 1 1 0 0 4 1 0 1 0 2 0 0 1 1 2 0 0 2 0 0 17 1 1844.9004 P53985 P53985 463 479 SLC16A1 Monocarboxylate transporter 1 yes yes 2;3 7.3921E-06 63.727 By MS/MS By MS/MS 3 1 0.72143 0.87667 11.762 3 Plateau 0.7021 0.73445 1.9405 2 0 Median 0.93803 0.89915 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60182000 27583000 32599000 11651000 6509200 5142100 48531000 21074000 27457000 0 0 0 0 0 0 0 0 0 0 0 0 6109 2476 6363 31072;31073;31074;31075 31189;31190;31191;31192;31193 31190 5 EEEVTGPVIAPLFPQK IRSGGPVVVLVQLEREEEVTGPVIAPLFPQ EEVTGPVIAPLFPQKREEGWWVVIGDAKSN R E E Q K R 1 0 0 0 0 1 3 1 0 1 1 1 0 1 3 0 1 0 0 2 0 0 16 0 1752.9298 O75643 O75643 2044 2059 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.015347 42.336 By MS/MS 1 0.45383 0.50565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45383 0.50565 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4342500 3097600 1244900 0 0 0 0 0 0 4342500 3097600 1244900 0 0 0 0 0 0 0 0 0 6110 1688 6364 31076 31194 31194 1 EEFAIMQTPAGELYDK ITASVQNPALRLVTREEFAIMQTPAGELYD EFAIMQTPAGELYDKSIIQSAQQDSIKKAN R E E D K S 2 0 0 1 0 1 3 1 0 1 1 1 1 1 1 0 1 0 1 0 0 0 16 0 1840.8553 Q92616 Q92616 761 776 GCN1L1 Translational activator GCN1 yes yes 2 0.0001133 68.536 By MS/MS By matching By matching 1 2 1 0.9997 0.88034 21.567 4 Median 0.82486 0.79315 NaN 1 0 Median 0.9997 0.88034 6.1801 2 0 Median 1.1597 1.2862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510600 2483100 3027600 3231500 1371100 1860400 1383600 717330 666240 895560 394620 500940 0 0 0 0 0 0 0 0 0 6111 3544 6365 31077;31078;31079;31080 31195 31195 1 EEFTAFLHPEEFEHMK RFKAADLNGDLTATREEFTAFLHPEEFEHM EFTAFLHPEEFEHMKEIVVLETLEDIDKNG R E E M K E 1 0 0 0 0 0 5 0 2 0 1 1 1 3 1 0 1 0 0 0 0 0 16 0 2019.9037 Q15293;E9PP27 Q15293 189 204 RCN1 Reticulocalbin-1 yes no 3 3.6424E-05 55.213 By MS/MS By MS/MS By MS/MS 1 1 1 0.90094 0.8133 8.2338 3 Median 0.86895 0.8133 NaN 1 0 Median 0.95133 0.81099 NaN 1 0 Median 0.90094 0.93662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20053000 10499000 9553100 3531400 1794600 1736800 8212500 4347500 3865000 8308600 4357400 3951300 0 0 0 0 0 0 0 0 0 6112 2940 6366 31081;31082;31083 31196;31197;31198;31199;31200 31200 5 EEGDLGPVYGFQWR NGSRDFLDSLGFSTREEGDLGPVYGFQWRH REEGDLGPVYGFQWRHFGAEYRDMESDYSG R E E W R H 0 1 0 1 0 1 2 3 0 0 1 0 0 1 1 0 0 1 1 1 0 0 14 0 1651.7631 P04818 P04818 127 140 TYMS Thymidylate synthase yes yes 2 0.00075708 61.65 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.224 1.0331 10.872 4 Median 1.2944 1.2468 NaN 1 0 Median 1.2371 1.0482 NaN 1 0 Median 0.98197 0.97195 NaN 1 0 Median 1.2111 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8709500 3799600 4909900 2625800 1096100 1529800 1099400 302650 796800 4635300 2259200 2376100 348910 141640 207260 0 0 0 0 0 0 6113 1852 6367 31084;31085;31086;31087 31201;31202;31203;31204 31204 4 EEGFPIRPHYFWPLLVGR ANKTDLAKALMKAVKEEGFPIRPHYFWPLL FPIRPHYFWPLLVGRRKEKNVQGIIEILKG K E E G R R 0 2 0 0 0 0 2 2 1 1 2 0 0 2 3 0 0 1 1 1 0 0 18 1 2212.1582 P42704;B8ZZ38;A0A0C4DG06 P42704 432 449 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 1.5747E-06 76.151 By MS/MS By MS/MS 1 1 1.0437 1.0802 36.114 2 Median 0.75314 0.83676 NaN 1 0 Median 1.4464 1.3945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5376500 3065700 2310700 3990600 2233500 1757100 1385900 832240 553660 0 0 0 0 0 0 0 0 0 0 0 0 6114 2315 6368 31088;31089 31205;31206;31207 31207 3 EEGGENLDQAR GHFRRILISLATGHREEGGENLDQAREDAQ TGHREEGGENLDQAREDAQVAAEILEIADT R E E A R E 1 1 1 1 0 1 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1216.532 E5RK69;P08133;E7EMC6 P08133 510 520 ANXA6 Annexin;Annexin A6 no no 2 0.00011913 135.71 By MS/MS 1 1.3073 1.1323 NaN 1 Median NaN NaN NaN 0 0 Median 1.3073 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4712600 1965600 2747000 0 0 0 4712600 1965600 2747000 0 0 0 0 0 0 0 0 0 0 0 0 6115 1898;854 6369 31090 31208;31209 31208 2 EEGMVPFIFVGTR VRVRVEGDNDKKNPREEGMVPFIFVGTREN PREEGMVPFIFVGTRENISNAQALLEYHLS R E E T R E 0 1 0 0 0 0 2 2 0 1 0 0 1 2 1 0 1 0 0 2 0 0 13 0 1480.7384 P51116 P51116 339 351 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.026794 27.329 By MS/MS 2 1.7245 1.7033 77.494 2 Median 1.7245 1.7033 77.494 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1434900 833730 601160 1434900 833730 601160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6116 2426 6370 31091;31092 31210 31210 1 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK PGLGADNSVVRFLPREEGPYEVEVTYDGVP SPFPLEAVAPTKPSKVKAFGPGLQGGSAGS R E E S K V 2 0 0 1 0 0 5 3 0 0 1 2 0 1 7 2 2 0 2 5 0 0 33 1 3484.729 P21333;Q60FE5;A0A087WWY3 P21333 1037 1069 FLNA Filamin-A no no 3 0.00027054 26.826 By matching By MS/MS 1 1 0.31418 0.31075 3.1408 2 Median 0.29553 0.30393 NaN 1 0 Median 0.334 0.31773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4364700 3310200 1054500 1395300 1112400 282840 2969400 2197700 771670 0 0 0 0 0 0 0 0 0 0 0 0 6117 2088;3120 6371 31093;31094 31211 31211 1 EEGRYDEEVEVYR HQTTKIKQLAAFAPREEGRYDEEVEVYRHH PREEGRYDEEVEVYRHHLEQMYKLCRPCQA R E E Y R H 0 2 0 1 0 0 5 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 13 1 1671.7376 Q5SNT2;H0Y4R5 Q5SNT2 142 154 TMEM201 Transmembrane protein 201 yes no 3 4.9345E-07 122.39 By MS/MS By matching 2 1 1.1802 1.2096 7.4035 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1591 1.1989 1.2598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5481 1.3616 NaN 1 0 Median 21061000 9063800 11997000 0 0 0 0 0 0 20047000 8671800 11375000 0 0 0 0 0 0 1014500 392010 622470 6118 3073 6372 31095;31096;31097 31212;31213 31212 2 EEGSPLELER LPAKADLLLSTQPGREEGSPLELERLKLEP TQPGREEGSPLELERLKLEPHEGLLLRFPY R E E E R L 0 1 0 0 0 0 4 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1157.5564 F5GZS6;J3KPF3;P08195;F5GZI0 F5GZS6 573 582 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.014003 39.305 By MS/MS 2 0.72296 0.62654 3.1884 2 Median NaN NaN NaN 0 0 Median 0.72296 0.62654 3.1884 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5793700 3428900 2364800 0 0 0 5793700 3428900 2364800 0 0 0 0 0 0 0 0 0 0 0 0 6119 1016 6373 31098;31099 31214;31215 31214 2 EEGTPLTLYYSHWR VSEQQAVEAWEKLTREEGTPLTLYYSHWRK REEGTPLTLYYSHWRKLRDREIQLEISGKE R E E W R K 0 1 0 0 0 0 2 1 1 0 2 0 0 0 1 1 2 1 2 0 0 0 14 0 1750.8315 Q9Y3T9 Q9Y3T9 610 623 NOC2L Nucleolar complex protein 2 homolog yes yes 3 0.00023795 57.159 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 0.89942 0.91852 22.143 6 Median NaN NaN NaN 0 0 Median 0.84112 0.71895 NaN 1 0 Median 0.7886 0.79039 23.488 2 0 Median 1.4723 1.2367 NaN 1 0 Median 0.92232 0.97236 NaN 1 0 Median 1.0663 0.90407 NaN 1 0 Median 13369000 7073000 6296300 0 0 0 733100 405270 327840 8311400 4397000 3914400 279350 113400 165950 3954800 2114700 1840100 90704 42648 48056 6120 4433 6374 31100;31101;31102;31103;31104;31105 31216;31217 31217 2 EEGVIDSSDKEIVAEAER EERVNILFDFVKKKKEEGVIDSSDKEIVAE VIDSSDKEIVAEAERLDVKAMGPLVLTEVL K E E E R L 2 1 0 2 0 0 5 1 0 2 0 1 0 0 0 2 0 0 0 2 0 0 18 1 1974.9382 P55010 P55010 252 269 EIF5 Eukaryotic translation initiation factor 5 yes yes 3 0.0008886 32.181 By MS/MS 1 1.3674 1.2832 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3674 1.2832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3973700 1539600 2434100 0 0 0 0 0 0 0 0 0 3973700 1539600 2434100 0 0 0 0 0 0 6121 2489 6375 31106 31218 31218 1 EEGVLTLWR RGYKNVFNALIRITREEGVLTLWRGCIPTM LIRITREEGVLTLWRGCIPTMARAVVVNAA R E E W R G 0 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 1 1 0 1 0 0 9 0 1101.5819 I3L1P8;Q02978 I3L1P8 163 171 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.0070414 52.716 By MS/MS By matching By matching 1 2 2 1.3774 1.3242 24.963 5 Median 1.0212 0.97398 NaN 1 0 Median 1.6862 1.4391 0.023434 2 0 Median 1.1089 1.0508 32.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8274300 3623300 4650900 3922400 1830400 2091900 2535500 952410 1583100 1816400 840500 975890 0 0 0 0 0 0 0 0 0 6122 1277 6376 31107;31108;31109;31110;31111 31219;31220 31219 2 EEGWWVVIGDAK EVTGPVIAPLFPQKREEGWWVVIGDAKSNS QKREEGWWVVIGDAKSNSLISIKRLTLQQK R E E A K S 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 2 0 2 0 0 12 0 1387.6772 O75643 O75643 2061 2072 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0047583 42.743 By matching By MS/MS By matching By matching 2 1 2 1 1.1058 1.0698 21.628 6 Median 1.1058 1.0698 1.1327 2 0 Median 1.1898 1.0471 NaN 1 0 Median 0.79019 0.86702 35.032 2 0 Median 1.428 1.2844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6655500 3300000 3355500 2737100 1373100 1363900 1647600 789870 857730 2061400 1059900 1001500 209470 77107 132370 0 0 0 0 0 0 6123 1688 6377 31112;31113;31114;31115;31116;31117 31221 31221 1 EEGYDSVFSVVR CLHPTDLQKVAEMIREEGYDSVFSVVRRHQ MIREEGYDSVFSVVRRHQFRWSEIQKGVRE R E E V R R 0 1 0 1 0 0 2 1 0 0 0 0 0 1 0 2 0 0 1 3 0 0 12 0 1385.6463 Q8NFW8;F5GYM0 Q8NFW8 163 174 CMAS N-acylneuraminate cytidylyltransferase yes no 2 0.00047924 77.533 By MS/MS 2 0.85852 0.89937 4.142 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85852 0.89937 4.142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23728000 11358000 12370000 0 0 0 0 0 0 23728000 11358000 12370000 0 0 0 0 0 0 0 0 0 6124 3441 6378 31118;31119 31222 31222 1 EEIFGPVMQILK PTVFGDVQDGMTIAKEEIFGPVMQILKFKT IAKEEIFGPVMQILKFKTIEEVVGRANNST K E E L K F 0 0 0 0 0 1 2 1 0 2 1 1 1 1 1 0 0 0 0 1 0 0 12 0 1402.753 P05091 P05091 415 426 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2 0.023918 31.074 By MS/MS 1 1.5141 1.295 NaN 1 Median NaN NaN NaN 0 0 Median 1.5141 1.295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2794400 1102100 1692200 0 0 0 2794400 1102100 1692200 0 0 0 0 0 0 0 0 0 0 0 0 6125 1860 6379 31120 31223;31224 31224 2 EEIINYEFDTK RQYQLLFTQGSGENKEEIINYEFDTKDLVC GENKEEIINYEFDTKDLVCLGLSSIVGVWY K E E T K D 0 0 1 1 0 0 3 0 0 2 0 1 0 1 0 0 1 0 1 0 0 0 11 0 1399.6507 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72 A0A3B3IUB5 194 204 HM13 Minor histocompatibility antigen H13 yes no 2 0.00065281 65.305 By MS/MS 1 1.5135 1.32 NaN 1 Median NaN NaN NaN 0 0 Median 1.5135 1.32 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590000 1757700 2832300 0 0 0 4590000 1757700 2832300 0 0 0 0 0 0 0 0 0 0 0 0 6126 444 6380 31121 31225 31225 1 EEILANGGSLSHHHGVGK SDPLTVFEQTEAAAREEILANGGSLSHHHG LANGGSLSHHHGVGKLRKQWLKESISDVGF R E E G K L 1 0 1 0 0 0 2 4 3 1 2 1 0 0 0 2 0 0 0 1 0 0 18 0 1840.918 O00116;B8ZZ81 O00116 604 621 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3;4 0.0053534 24.784 By matching By MS/MS By matching By MS/MS 2 2 1 2 1.0551 0.90735 16.144 7 Median 0.87016 0.83982 6.7292 2 0 Median 1.1723 1.0099 18.9 2 0 Median 1.1828 1.2555 NaN 1 0 Median 1.101 0.94669 6.0025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14077000 6598900 7478500 4467100 2316500 2150600 5530000 2343500 3186600 2363500 1079200 1284300 1716900 859730 857140 0 0 0 0 0 0 6127 1439 6381 31122;31123;31124;31125;31126;31127;31128 31226;31227;31228;31229;31230 31227 5 EEILAQAK MKDCMRELDDTRASREEILAQAKENEKKLK DDTRASREEILAQAKENEKKLKSMEAEMIQ R E E A K E 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 P35579 P35579 1662 1669 MYH9 Myosin-9 yes yes 2 0.0036575 86.086 By MS/MS 1 1.0496 0.92944 NaN 1 Median NaN NaN NaN 0 0 Median 1.0496 0.92944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19870000 9482300 10387000 0 0 0 19870000 9482300 10387000 0 0 0 0 0 0 0 0 0 0 0 0 6128 2244 6382 31129 31231;31232 31232 2 EEIQETQTPTHSR KDDEIVFKQPISCVKEEIQETQTPTHSRKK VKEEIQETQTPTHSRKKRRRSSNQ______ K E E S R K 0 1 0 0 0 2 3 0 1 1 0 0 0 0 1 1 3 0 0 0 0 0 13 0 1554.7274 Q9BYG3;H7BZL0 Q9BYG3 272 284 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.00064693 68.551 By MS/MS 1 0.9255 0.99116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9255 0.99116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1659500 960920 698540 0 0 0 0 0 0 0 0 0 0 0 0 1659500 960920 698540 0 0 0 6129 3891 6383 31130 31233;31234 31233 2 EEIQSSISGVTAAYNR DEPPNFVQNSMQLSREEIQSSISGVTAAYN EIQSSISGVTAAYNREQLWLANEGLITRLQ R E E N R E 2 1 1 0 0 1 2 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 16 0 1723.8377 P46940;A0A0J9YXZ5;H0YLE8;A0A087WWP1 P46940 723 738 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 8.6926E-36 205.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1 1.1212 0.97721 13.038 10 Median 1.0969 1.029 12.197 3 0 Median 1.0725 0.92276 9.5939 4 0 Median 1.1143 1.2177 NaN 1 0 Median 1.2664 1.1122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1982 0.99184 NaN 1 0 Median 98735000 46885000 51850000 74269000 35666000 38603000 13614000 6423600 7190700 9884500 4305900 5578600 603660 294050 309610 0 0 0 363980 195200 168780 6130 2350 6384 31131;31132;31133;31134;31135;31136;31137;31138;31139;31140 31235;31236;31237;31238;31239;31240;31241;31242;31243;31244;31245;31246 31236 12 EEKAEPPQAMNALMR EEKSPSKKKKKIQKKEEKAEPPQAMNALMR EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K E E M R L 3 1 1 0 0 1 3 0 0 0 1 1 2 0 2 0 0 0 0 0 0 0 15 1 1713.8178 Q12906 Q12906 394 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 5.4572E-05 76.262 By matching By MS/MS By matching 1 1 1 0.59513 0.67505 41.687 3 Median 0.75479 0.77293 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59513 0.67505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32605 0.35426 NaN 1 0 Median 10892000 6623000 4269100 2577700 1212500 1365200 0 0 0 7792800 5073500 2719200 0 0 0 0 0 0 521600 336940 184660 6131 2769 6385 31141;31142;31143 31247;31248 31248 2 EELAEALKK SILTTGMSATSRKRKEELAEALKKLILSKG TSRKRKEELAEALKKLILSKGKTPALKYQQ K E E K K L 2 0 0 0 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1029.5706 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 749 757 MCM4 DNA replication licensing factor MCM4 yes no 2 0.066705 40.002 By MS/MS 1 1.0774 1.0428 NaN 1 Median NaN NaN NaN 0 0 Median 1.0774 1.0428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4690600 2234100 2456500 0 0 0 4690600 2234100 2456500 0 0 0 0 0 0 0 0 0 0 0 0 6132 441 6386 31144 31249 31249 1 EELDFQK MLRRVDAENRLQTMKEELDFQKNIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE K E E Q K N 0 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 907.42871 P02545;H0YAB0;Q3BDU5 P02545 202 208 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0065536 92.692 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.1108 1.0956 9.3404 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1108 1.1448 NaN 1 0 Median 1.5496 1.3178 NaN 1 0 Median 1.0832 1.0757 2.5972 2 0 Median 1.2588 1.0487 NaN 1 0 Median 20845000 9459400 11386000 0 0 0 0 0 0 7661800 3431600 4230200 4413300 1612500 2800700 6483800 3515000 2968800 2286300 900170 1386200 6133 1834;3010 6387 31145;31146;31147;31148;31149 31250;31251;31252 31252 3 EELEALFLPYDLK QNRNMGKPAQPALSREELEALFLPYDLKRL SREELEALFLPYDLKRLEMYSRNMVDYHLI R E E L K R 1 0 0 1 0 0 3 0 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1578.8181 Q9H0A0;A0A087WV29 Q9H0A0 811 823 NAT10 N-acetyltransferase 10 yes no 2 0.0166 32.731 By matching By MS/MS By matching 3 1 1 1.0199 0.94199 12.518 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79977 0.82254 16.025 3 0 Median 1.1189 0.94199 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1381 0.99929 NaN 1 0 Median 3784500 2059100 1725400 0 0 0 0 0 0 3053400 1704800 1348600 660550 318420 342130 0 0 0 70530 35859 34670 6134 3921 6388 31150;31151;31152;31153;31154 31253;31254 31254 2 EELEEVIK LATVQPGQNFHMFTKEELEEVIKDI_____ NFHMFTKEELEEVIKDI_____________ K E E I K D 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 987.51244 P28066 P28066 232 239 PSMA5 Proteasome subunit alpha type-5 yes yes 2 0.0087245 79.469 By MS/MS 1 1.4229 1.2042 NaN 1 Median NaN NaN NaN 0 0 Median 1.4229 1.2042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2459100 949960 1509200 0 0 0 2459100 949960 1509200 0 0 0 0 0 0 0 0 0 0 0 0 6135 2159 6389 31155 31255 31255 1 EELEQASQAHGAR ITDLQSSISNLSQAKEELEQASQAHGARLT AKEELEQASQAHGARLTAQVASLTSELTTL K E E A R L 3 1 0 0 0 2 3 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1424.6644 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 483 495 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 0.00045482 73.067 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 0.87652 0.8988 13.042 6 Median NaN NaN NaN 0 0 Median 1.1381 0.94889 NaN 1 1 Median 0.87652 0.97353 3.3175 2 0 Median 0.96741 0.84707 NaN 1 0 Median 0.73768 0.76942 14.311 2 0 Median NaN NaN NaN 0 0 Median 8133700 4470400 3663300 0 0 0 1227000 656890 570140 4056400 2217700 1838700 284930 132450 152480 2565300 1463400 1101900 0 0 0 6136 2905;77 6390 31156;31157;31158;31159;31160;31161 31256;31257;31258;31259;31260 31256 5 EELGFRPEYSASQLK MIDRWYHPGCFVKNREELGFRPEYSASQLK EELGFRPEYSASQLKGFSLLATEDKEALKK R E E L K G 1 1 0 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 15 1 1752.8683 P09874 P09874 168 182 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.1237E-26 202.16 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 8 13 3 6 0.97581 0.97163 17.777 33 Median 0.78478 0.8175 7.3318 2 0 Median 1.0653 1.0137 NaN 1 0 Median 0.82177 0.93347 25.895 8 0 Median 1.1095 1.0416 9.7439 13 0 Median 0.82426 0.93301 9.8284 3 0 Median 0.94947 0.83572 13.81 6 0 Median 774740000 403290000 371450000 19576000 10363000 9212900 1492000 663490 828470 505340000 272750000 232590000 219730000 103970000 115760000 19025000 10389000 8635900 9576300 5156900 4419300 6137 1922 6391 31162;31163;31164;31165;31166;31167;31168;31169;31170;31171;31172;31173;31174;31175;31176;31177;31178;31179;31180;31181;31182;31183;31184;31185;31186;31187;31188;31189;31190;31191;31192;31193;31194 31261;31262;31263;31264;31265;31266;31267;31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278;31279;31280;31281;31282;31283 31272 23 EELGLIEQAYDNPHEALSR KEAYSVKSRLNQSQREELGLIEQAYDNPHE LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R E E S R I 2 1 1 1 0 1 4 1 1 1 3 0 0 0 1 1 0 0 1 0 0 0 19 0 2183.0495 Q6P2Q9;I3L0J9 Q6P2Q9 862 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 1.0184E-38 145.62 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 0.83956 0.90048 11.137 7 Median 0.89477 0.87067 4.7618 2 1 Median 1.0686 0.91328 NaN 1 0 Median 0.79192 0.86321 14.126 3 2 Median NaN NaN NaN 0 0 Median 0.9637 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median 91169000 48480000 42689000 12418000 6538300 5879800 5514900 2511000 3003900 66664000 35987000 30677000 0 0 0 6572500 3444100 3128400 0 0 0 6138 3157 6392 31195;31196;31197;31198;31199;31200;31201 31284;31285;31286;31287;31288;31289 31287 6 EELGQGLQGVEQK VQQVRRSHQDFSRQREELGQGLQGVEQKVQ QREELGQGLQGVEQKVQSLQATFGTFESIL R E E Q K V 0 0 0 0 0 3 3 3 0 0 2 1 0 0 0 0 0 0 0 1 0 0 13 0 1413.71 Q07065 Q07065 149 161 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00078504 68.626 By MS/MS By MS/MS By matching 2 1 1 0.87093 0.78444 49.424 4 Median 0.53681 0.50661 4.7418 2 2 Median 1.4033 1.2069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.366 1.1746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23056000 13788000 9267900 19092000 12317000 6775600 3104000 1182400 1921500 0 0 0 859740 288920 570830 0 0 0 0 0 0 6139 2730 6393 31202;31203;31204;31205 31290;31291;31292;31293 31293 4 EELITNWEQIR QQSHPLSATQIQVKREELITNWEQIRTLAA QVKREELITNWEQIRTLAAERHARLNDSYR R E E I R T 0 1 1 0 0 1 3 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 11 0 1429.7201 A0A0D9SF54;Q13813 Q13813 337 347 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 1.2623E-10 180.44 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 3 1 1.0045 0.94636 42.266 8 Median 1.6353 1.5588 NaN 1 1 Median 1.2303 1.0458 NaN 1 0 Median 0.65913 0.72087 45.818 2 0 Median 1.0171 0.89857 43.977 3 0 Plateau 1.0133 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median 33641000 16392000 17249000 5224300 2029900 3194400 3262300 1448600 1813800 17861000 9417800 8442800 1583400 888270 695110 5710700 2607600 3103100 0 0 0 6140 264;2838 6394 31206;31207;31208;31209;31210;31211;31212;31213 31294;31295;31296;31297;31298;31299;31300 31296 7 EELLAEFGSGTLDLPALTR VWDVLASGYVSRAAREELLAEFGSGTLDLP AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R E E T R R 2 1 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 19 0 2031.0524 P58107;A0A075B730 P58107 2551 2569 EPPK1 Epiplakin yes no 2 0.00016117 40.113 By MS/MS 3 1.1917 0.99683 10.152 3 Median NaN NaN NaN 0 0 Median 1.1917 0.99683 10.152 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16065000 7398000 8666800 0 0 0 16065000 7398000 8666800 0 0 0 0 0 0 0 0 0 0 0 0 6141 2520 6395 31214;31215;31216 31301 31301 1 EELMESR RLSSEMNTSTVNSAREELMESRMRIESLSS TSTVNSAREELMESRMRIESLSSQLSNLQK R E E S R M 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 7 0 892.39603 P20700;E9PBF6;A0A0D9SFE5 P20700 291 297 LMNB1 Lamin-B1 yes no 2 0.0026425 125.08 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 6 4 0.91386 0.96185 20.72 15 Median NaN NaN NaN 0 0 Median 0.68555 0.59998 NaN 1 0 Median 0.9306 0.96809 0.91522 2 0 Median 1.3841 1.1822 3.5186 2 0 Median 0.8277 0.83876 4.7114 6 0 Median 1.4367 1.1987 2.0638 4 0 Median 78951000 40911000 38040000 0 0 0 736560 384990 351570 18352000 8822300 9529400 1210600 486970 723580 52831000 28846000 23986000 5820700 2371400 3449400 6142 2084 6396;6397 31217;31218;31219;31220;31221;31222;31223;31224;31225;31226;31227;31228;31229;31230;31231 31302;31303;31304;31305;31306;31307;31308;31309;31310;31311;31312;31313;31314;31315;31316;31317;31318 31311 841 17 EELNAISGPNEFAEFYNR GNLRDLYDDKDGLRKEELNAISGPNEFAEF NAISGPNEFAEFYNRLKQIKEFHRKHPNEI K E E N R L 2 1 3 0 0 0 4 1 0 1 1 0 0 2 1 1 0 0 1 0 0 0 18 0 2098.9596 Q12874 Q12874 70 87 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 2.5378E-09 98.105 By matching By MS/MS By matching By MS/MS 1 2 2 2 0.90878 0.87717 12.738 6 Median 1.0327 1.0462 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86626 0.8928 6.7281 2 0 Median 0.99473 0.85555 7.76 2 0 Median 0.71718 0.72213 NaN 1 0 Median NaN NaN NaN 0 0 Median 15518000 8157700 7360300 919010 502420 416580 0 0 0 11049000 5770400 5278600 857320 391840 465480 2692600 1493000 1199600 0 0 0 6143 2767 6398 31232;31233;31234;31235;31236;31237;31238 31319;31320;31321;31322;31323 31320 5 EELQANGSAPAADKEEPAAAGSGAASPSAAEK VNGDASPAAAESGAKEELQANGSAPAADKE AAAGSGAASPSAAEKGEPAAAAAPEAGASP K E E E K G 11 0 1 1 0 1 5 3 0 0 1 2 0 0 3 4 0 0 0 0 0 0 32 1 2981.385 P29966 P29966 56 87 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 3 5.0144E-30 78.415 By matching By MS/MS By MS/MS 1 1 1 0.68506 0.63255 4.2827 3 Median 0.71678 0.6804 NaN 1 0 Median 0.67513 0.631 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68506 0.63255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14469000 7937900 6531500 2803000 1421500 1381500 7256800 4027200 3229600 0 0 0 4409500 2489100 1920400 0 0 0 0 0 0 6144 2175 6399 31239;31240;31241 31324;31325;31326;31327 31324 4 EELQSGVDAANSAAQQYQR KQQKRQSGQTDPLQKEELQSGVDAANSAAQ SGVDAANSAAQQYQRRLAAVALINAAIQKG K E E Q R R 4 1 1 1 0 4 2 1 0 0 1 0 0 0 0 2 0 0 1 1 0 0 19 0 2063.9508 P46940;A0A0J9YXZ5 P46940 369 387 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.5777E-18 110.29 By matching By MS/MS 1 1 0.87054 0.78812 5.0841 2 Median 0.84062 0.81697 NaN 1 0 Median 0.90151 0.76029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5912800 2333000 3579800 3681200 1327800 2353400 2231500 1005100 1226400 0 0 0 0 0 0 0 0 0 0 0 0 6145 2350 6400 31242;31243 31328;31329 31329 2 EELRELNDR TTPLSPTRLSRLQEKEELRELNDRLAVYID SRLQEKEELRELNDRLAVYIDKVRSLETEN K E E D R L 0 2 1 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1172.5786 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5;Q03252 P20700 34 42 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.0021386 125.82 By matching By MS/MS By matching 1 2 1 0.99057 0.99636 24.72 4 Median 1.2732 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75741 0.81879 3.1762 2 0 Median 1.4843 1.3123 NaN 1 0 Median 12921000 6497600 6423700 1726900 658550 1068300 0 0 0 0 0 0 0 0 0 9722800 5258400 4464400 1471600 580660 890970 6146 2084;2709 6401 31244;31245;31246;31247 31330 31330 1 EELSALVAPAFAHTSQVLVDK AFALGGLGSGFASNREELSALVAPAFAHTS VAPAFAHTSQVLVDKSLKGWKEIEYEVVRD R E E D K S 4 0 0 1 0 1 2 0 1 0 3 1 0 1 1 2 1 0 0 3 0 0 21 0 2224.1739 F8VPD4;P27708 F8VPD4 572 592 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.00034108 28.202 By MS/MS By MS/MS By matching 2 2 1 1.0327 0.9783 12.111 5 Median 1.0448 1.0125 4.8578 2 0 Median 0.93959 0.82874 0.034462 2 0 Median NaN NaN NaN 0 0 Median 1.1647 1.0561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23242000 11563000 11679000 5152000 2177500 2974500 18025000 9354600 8670900 0 0 0 64563 30982 33582 0 0 0 0 0 0 6147 1057 6402 31248;31249;31250;31251;31252 31331;31332;31333;31334;31335 31332 5 EELSEEGYLAK EIKNQLCDLETKLRKEELSEEGYLAKVKSL KLRKEELSEEGYLAKVKSLLNKDLSLENGA K E E A K V 1 0 0 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1266.598 P26358;K7EJL0 P26358 71 81 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.00026466 73.233 By matching By MS/MS 1 1 0.34487 0.35206 132.19 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.11963 0.13825 NaN 1 0 Median 0.99425 0.89652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11818000 7632400 4186100 0 0 0 0 0 0 7146900 5539900 1607000 4671600 2092400 2579100 0 0 0 0 0 0 6148 2142 6403 31253;31254 31336;31337 31336 2 EELSNVLAAMR IKKRVGTHIRAKRKREELSNVLAAMRKAAA KRKREELSNVLAAMRKAAAKKD________ R E E M R K 2 1 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1231.6231 Q9Y3U8 Q9Y3U8 88 98 RPL36 60S ribosomal protein L36 yes yes 2 0.00011259 125.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 3 3 1.1524 1.0355 27.893 13 Median 0.9438 0.89256 24.476 2 0 Median 1.187 0.99502 39.697 4 0 Median 1.1101 1.1246 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0632 1.125 33.155 3 0 Median 1.2593 0.98777 13.354 3 0 Median 89953000 41541000 48413000 52734000 24834000 27900000 11161000 4691900 6469600 10904000 4787000 6117300 0 0 0 9477700 4466400 5011300 5675800 2761300 2914500 6149 4434 6404;6405 31255;31256;31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267 31338;31339;31340;31341;31342;31343;31344;31345;31346;31347;31348;31349;31350;31351 31345 1983 14 EELTLEGIR TKKFMRDPIRILVKKEELTLEGIRQFYINV RILVKKEELTLEGIRQFYINVEREEWKLDT K E E I R Q 0 1 0 0 0 0 3 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3KTN0 P60842 239 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.00046698 123.69 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 2 2 2 1.1685 1.0231 16.787 10 Median 1.2494 1.2145 4.2327 2 1 Median 1.1249 0.96977 12.323 2 0 Median 1.2867 1.3238 8.5981 2 0 Median 1.1074 0.9442 6.6094 2 0 Median NaN NaN NaN 0 0 Median 1.0697 0.91323 4.4943 2 0 Median 135900000 62621000 73279000 19219000 7984300 11234000 28674000 13952000 14721000 45568000 20246000 25322000 38106000 18289000 19817000 0 0 0 4334100 2149300 2184800 6150 2529 6406 31268;31269;31270;31271;31272;31273;31274;31275;31276;31277;31278 31352;31353;31354;31355;31356;31357;31358;31359;31360;31361 31357 10 EELTWLQSLR DYFSFLFSTLTGFSKEELTWLQSLRGVPHV TGFSKEELTWLQSLRGVPHVIQTQLSPVLL K E E L R G 0 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 10 0 1273.6667 Q9NXF1 Q9NXF1 694 703 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.048836 28.399 By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1.1889 1.1038 16.419 7 Median 1.0011 1.0056 NaN 1 0 Median 1.3035 1.122 15.369 2 0 Median 1.1458 1.2246 NaN 1 0 Median 1.7895 1.5415 NaN 1 0 Median 0.98647 0.97401 NaN 1 0 Median 1.4032 1.1038 NaN 1 0 Median 11205000 5166700 6038200 2545100 1196200 1348900 1928600 781260 1147300 2215700 1082400 1133300 1252900 505590 747310 2967100 1474100 1493000 295450 127110 168330 6151 4163 6407 31279;31280;31281;31282;31283;31284;31285 31362;31363 31363 2 EELVAEQALK LLWTCIMNAVEWNKKEELVAEQALKHLKQY EWNKKEELVAEQALKHLKQYAPLLAVFSSQ K E E L K H 2 0 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1128.6027 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7 E7ETZ4 311 320 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.0013538 66.27 By matching By MS/MS 1 1 0.97877 0.92064 20.18 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0748 1.0618 NaN 1 0 Median 0.89136 0.79822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8712000 4296200 4415800 0 0 0 0 0 0 4022400 1983700 2038700 4689700 2312500 2377100 0 0 0 0 0 0 6152 892 6408 31286;31287 31364 31364 1 EELYQNLTR AFRALSSEGKPYVTKEELYQNLTREQADYC KPYVTKEELYQNLTREQADYCVSHMKPYVD K E E T R E 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 A0A0D9SF54;Q13813 Q13813 2427 2435 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0005315 117.04 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.0173 0.8866 52.416 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0568 1.1031 15.108 2 0 Median 1.0687 0.93677 7.7833 2 0 Median 0.97764 0.69953 NaN 1 0 Median 0.52869 0.46859 88.413 2 0 Median 37793000 18968000 18825000 0 0 0 0 0 0 22199000 11315000 10884000 13997000 6850300 7146900 230510 92395 138120 1367100 710560 656510 6153 264;2838 6409 31288;31289;31290;31291;31292;31293;31294 31365;31366;31367;31368;31369;31370 31367 6 EEMIHNLQ SLMSLVNKTTHLIAKEEMIHNLQ_______ TTHLIAKEEMIHNLQ_______________ K E E L Q - 0 0 1 0 0 1 2 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 8 0 1012.4648 O00232 O00232 449 456 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0053554 85.357 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8272200 0 0 0 0 0 8272200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6154 1449 6410 31295 31371 31371 1 EEMLAIMK AFNLYDINKDGYITKEEMLAIMKSIYDMMG KDGYITKEEMLAIMKSIYDMMGRHTYPILR K E E M K S 1 0 0 0 0 0 2 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 8 0 963.47692 A0A0A0MRH3;Q9Y2W7 A0A0A0MRH3 185 192 KCNIP3 Calsenilin yes no 2 0.022502 52.683 By matching By MS/MS By matching By matching 1 1 1 1 1.0075 0.98356 8.7861 4 Median 1.0703 0.98619 NaN 1 0 Median 1.303 1.1111 NaN 1 0 Median 0.94831 0.98093 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90536 0.89691 NaN 1 0 Median NaN NaN NaN 0 0 Median 48603000 22840000 25762000 28268000 12940000 15328000 7982700 3455100 4527600 9603800 5032200 4571500 0 0 0 2748000 1413100 1334900 0 0 0 6155 160 6411 31296;31297;31298;31299 31372 31372 75 1 EEMLQMIR QQGRLIDQQSNKLAKEEMLQMIRHGATHVF QSNKLAKEEMLQMIRHGATHVFASKESELT K E E I R H 0 1 0 0 0 1 2 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 8 0 1048.5045 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 651 658 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.00078617 98.133 By MS/MS 1 0.78255 0.85331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78255 0.85331 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857900 1022400 835500 0 0 0 0 0 0 1857900 1022400 835500 0 0 0 0 0 0 0 0 0 6156 167;643 6412 31300 31373 31373 1 EEMQSNVEVVHTYR TQALPDMVVSHLFGKEEMQSNVEVVHTYRQ KEEMQSNVEVVHTYRQHIVNDMNPGNLHLF K E E Y R Q 0 1 1 0 0 1 3 0 1 0 0 0 1 0 0 1 1 0 1 3 0 0 14 0 1719.7886 Q92597 Q92597 199 212 NDRG1 Protein NDRG1 yes yes 3 4.4144E-09 110.92 By MS/MS By MS/MS By matching 1 1 1 1.3447 1.3362 24.559 3 Median 1.3447 1.3362 NaN 1 0 Median 1.3161 1.1484 NaN 1 0 Median 1.7108 1.8566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17158000 7038400 10119000 4301300 2010000 2291300 9965200 3892900 6072400 2891200 1135600 1755600 0 0 0 0 0 0 0 0 0 6157 3540 6413 31301;31302;31303 31374;31375;31376 31376 3 EENAEQQALAAK NKKDELQSERNYLWREENAEQQALAAKRED LWREENAEQQALAAKREDLEKKQQLLRAAT R E E A K R 4 0 1 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 12 0 1300.6259 Q9UQE7 Q9UQE7 475 486 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 5.325E-06 115.71 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.0666 0.97369 13.756 7 Median NaN NaN NaN 0 0 Median 1.5154 1.3054 NaN 1 1 Median 0.90495 0.97369 NaN 1 0 Median 1.1004 0.9376 NaN 1 0 Median 0.87363 0.90886 11.251 2 1 Median 1.1417 0.95968 6.8718 2 0 Median 29841000 14341000 15500000 0 0 0 3843300 1396000 2447300 6746100 3574900 3171200 2336200 1123700 1212400 13287000 6690500 6596500 3628900 1556300 2072600 6158 4362 6414 31304;31305;31306;31307;31308;31309;31310 31377;31378;31379;31380;31381;31382;31383 31382 7 EENEGVYNGSWGGR INQPQYAWLKELGLREENEGVYNGSWGGRG REENEGVYNGSWGGRGEVITTYCPANNEPI R E E G R G 0 1 2 0 0 0 3 4 0 0 0 0 0 0 0 1 0 1 1 1 0 0 14 0 1552.6542 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0;H0YHM6;F8VVF2;F8WDY6;A0A0J9YWM6;F8WD33;A0A1B0GW65;A0A0J9YWK1 P49419 49 62 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.064665 22.917 By matching By MS/MS 1 1 0.95257 0.88443 24.941 2 Median 0.74309 0.74143 NaN 1 0 Median 1.2211 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4244800 2123500 2121300 2265000 1294700 970380 1979700 828790 1150900 0 0 0 0 0 0 0 0 0 0 0 0 6159 318 6415 31311;31312 31384 31384 1 EENLSEDSK SEGEPLFAGGSAIPKEENLSEDSKSSSLNS GSAIPKEENLSEDSKSSSLNSGNYLNPACR K E E S K S 0 0 1 1 0 0 3 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 9 0 1049.4513 Q9UQR0;B4DRC2;H0Y6S1 Q9UQR0 537 545 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.014601 44.349 By MS/MS 1 0.81151 0.86169 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81151 0.86169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2156100 1113700 1042400 0 0 0 0 0 0 2156100 1113700 1042400 0 0 0 0 0 0 0 0 0 6160 4363 6416 31313 31385 31385 1 EEPCLLKR DLSLLTATVVPPSGREEPCLLKRLRNGHVG VVPPSGREEPCLLKRLRNGHVGISFVPKET R E E K R L 0 1 0 0 1 0 2 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 1 1043.5434 P21333;H0Y5F3;H7C2E7;Q60FE5 P21333 1994 2001 FLNA Filamin-A no no 2 0.051737 48.504 By MS/MS 1 0.72607 0.70013 NaN 1 Median NaN NaN NaN 0 0 Median 0.72607 0.70013 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1781400 944980 836440 0 0 0 1781400 944980 836440 0 0 0 0 0 0 0 0 0 0 0 0 6161 2088;3120 6417 31314 31386 31386 1 EEPFFPPPEEFVFIHAVPVEER VLCKNCVVELNFGQKEEPFFPPPEEFVFIH PEEFVFIHAVPVEERVRTAVPPKTIEECEV K E E E R V 1 1 0 0 0 0 6 0 1 1 0 0 0 4 5 0 0 0 0 3 0 0 22 0 2640.29 Q1KMD3;H3BQZ7 Q1KMD3 418 439 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.05953 7.3604 By MS/MS By matching 1 2 0.34181 0.36544 61.117 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34181 0.36544 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.27013 0.29477 84.632 2 0 Median NaN NaN NaN 0 0 Median 8626800 6887300 1739500 0 0 0 0 0 0 1170600 838210 332440 0 0 0 7456200 6049100 1407100 0 0 0 6162 3002 6418 31315;31316;31317 31387 31387 1 EEPGEDFPAAR KTECERLAGTESPVREEPGEDFPAARRLYW SPVREEPGEDFPAARRLYWDDLKRKLSEKL R E E A R R 2 1 0 1 0 0 3 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 11 0 1216.536 P02786;G3V0E5 P02786 110 120 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.019614 35.224 By MS/MS 1 0.6275 0.56736 NaN 1 Median NaN NaN NaN 0 0 Median 0.6275 0.56736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 950270 446360 503910 0 0 0 950270 446360 503910 0 0 0 0 0 0 0 0 0 0 0 0 6163 1836 6419 31318 31388 31388 1 EEPKEEEMTEEEK TEEEDPKEEPIKEIKEEPKEEEMTEEEKAA IKEEPKEEEMTEEEKAAQKAKPVATAPIPG K E E E K A 0 0 0 0 0 0 8 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 13 1 1635.6822 O14776;G3V220 O14776 504 516 TCERG1 Transcription elongation regulator 1 yes no 3 0.011565 41.092 By MS/MS 2 0.88556 0.84356 10.206 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88556 0.84356 10.206 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2312500 1291300 1021200 0 0 0 0 0 0 0 0 0 2312500 1291300 1021200 0 0 0 0 0 0 6164 1494 6420 31319;31320 31389;31390 31389 2 EEPPKELPAAEPVLSPLEGTK RTKALTNMSRTLVNKEEPPKELPAAEPVLS LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI K E E T K M 2 0 0 0 0 0 5 1 0 0 3 2 0 0 5 1 1 0 0 1 0 0 21 1 2230.1733 F6VRR5;Q9BY77 F6VRR5 278 298 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 6.0032E-09 55.575 By MS/MS By matching 2 1 0.55354 0.5533 36.88 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48742 0.51894 51.893 2 0 Median 0.55354 0.5533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29471000 18177000 11294000 0 0 0 0 0 0 28198000 17328000 10871000 1272400 848920 423470 0 0 0 0 0 0 6165 1051 6421 31321;31322;31323 31391 31391 1 EEPVLKEEAPVQPILSSVPTTEVSTGVK NRPNERVDTVSEKPREEPVLKEEAPVQPIL ILSSVPTTEVSTGVKFQVGDLVWSKVGTYP R E E V K F 1 0 0 0 0 1 5 1 0 1 2 2 0 0 4 3 3 0 0 5 0 0 28 1 2962.575 Q9BZ95;E9PKA2 Q9BZ95 240 267 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 3 0.0085745 21.052 By MS/MS By matching 1 1 0.56624 0.59845 46.423 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37693 0.43099 NaN 1 0 Median 0.85062 0.83098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4375400 3000700 1374700 0 0 0 0 0 0 4206700 2917800 1289000 168690 82890 85797 0 0 0 0 0 0 6166 3896 6422 31324;31325 31392 31392 1 EEPVPLETQVVEEEEDSGAPPLKR LPSSEVADEPPTLTKEEPVPLETQVVEEEE VVEEEEDSGAPPLKRFCVDQPTVPQTASES K E E K R F 1 1 0 1 0 1 7 1 0 0 2 1 0 0 4 1 1 0 0 3 0 0 24 1 2676.313 F2Z3H6;Q9BQE9 F2Z3H6 175 198 BCL7B B-cell CLL/lymphoma 7 protein family member B yes no 3 0.026814 20.199 By MS/MS 1 0.45259 0.49929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45259 0.49929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1254700 800860 453800 0 0 0 0 0 0 1254700 800860 453800 0 0 0 0 0 0 0 0 0 6167 994 6423 31326 31393 31393 1 EEPVSSGPEEAVGK AGHRSGSKKKRKFSKEEPVSSGPEEAVGKS KEEPVSSGPEEAVGKSSSKKKKKFHKASQE K E E G K S 1 0 0 0 0 0 4 2 0 0 0 1 0 0 2 2 0 0 0 2 0 0 14 0 1413.6624 O00567 O00567 565 578 NOP56 Nucleolar protein 56 yes yes 2 3.2479E-07 115.18 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.64383 0.65907 30.655 5 Median NaN NaN NaN 0 0 Median 1.304 1.1266 NaN 1 0 Median 0.64383 0.65907 NaN 1 0 Median 1.0387 0.88771 NaN 1 0 Median 0.5649 0.56093 0.86318 2 0 Median NaN NaN NaN 0 0 Median 19240000 11334000 7906800 0 0 0 1969300 888590 1080800 8959800 5484600 3475200 1552100 847790 704350 6759000 4112500 2646500 0 0 0 6168 1472 6424 31327;31328;31329;31330;31331 31394;31395;31396;31397;31398;31399;31400;31401 31396 8 EEQEETSAIR LICEELKTMLEKIPKEEQEETSAIRVGFIT EKIPKEEQEETSAIRVGFITYNKVLHFFNV K E E I R V 1 1 0 0 0 1 4 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 10 0 1190.5415 E9PC44;E9PDM8;O94855 E9PC44 31 40 SEC24D Protein transport protein Sec24D yes no 2 0.00072724 112.84 By MS/MS 2 0.91147 0.78278 9.0124 2 Median NaN NaN NaN 0 0 Median 0.91147 0.78278 9.0124 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3717100 1923500 1793600 0 0 0 3717100 1923500 1793600 0 0 0 0 0 0 0 0 0 0 0 0 6169 910 6425 31332;31333 31402;31403 31403 2 EEQHQLAVTAYLK KALEVIKPAHILQEKEEQHQLAVTAYLKNS EKEEQHQLAVTAYLKNSRKEHQRILARRQT K E E L K N 2 0 0 0 0 2 2 0 1 0 2 1 0 0 0 0 1 0 1 1 0 0 13 0 1528.7886 Q14152 Q14152 547 559 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.011633 25.731 By matching By MS/MS By matching By matching 1 2 1 1 1.0142 0.87152 29.183 5 Median 1.0731 1.1332 NaN 1 0 Median 1.0708 0.93496 9.9375 2 0 Median 0.49312 0.5336 NaN 1 0 Median 0.87795 0.74992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15062000 7255100 7806800 6601100 2728900 3872200 5218300 2355400 2862900 2897400 1971000 926370 345220 199820 145400 0 0 0 0 0 0 6170 2860 6426 31334;31335;31336;31337;31338 31404 31404 1 EEQKLEAHSDWVR NLIKLWKEEEDGQWKEEQKLEAHSDWVRDV WKEEQKLEAHSDWVRDVAWAPSIGLPTSTI K E E V R D 1 1 0 1 0 1 3 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 13 1 1625.7798 P55735;A8MXL6 P55735 204 216 SEC13 Protein SEC13 homolog yes no 3;4 0.0032189 43.382 By MS/MS 2 1.0736 1.1711 15.104 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0736 1.1711 15.104 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7252900 3478400 3774500 0 0 0 0 0 0 7252900 3478400 3774500 0 0 0 0 0 0 0 0 0 6171 2500 6427 31339;31340 31405;31406 31405 2 EEQLQQILK VERQENEQRRLFIQKEEQLQQILKRKNKQA RLFIQKEEQLQQILKRKNKQAFLDELESSD K E E L K R 0 0 0 0 0 3 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1127.6186 P51948;H0YJ92;H0YJF2 P51948 168 176 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 2 0.020926 38.792 By matching By MS/MS 1 2 1.1543 1.2577 22.357 3 Plateau 1.1543 1.2577 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95542 0.99598 25.233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15533000 7255800 8277500 9314600 4264800 5049800 0 0 0 6218700 2991100 3227700 0 0 0 0 0 0 0 0 0 6172 2445 6428 31341;31342;31343 31407 31407 1 EEQMDGTVTLK LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV LLEKEEQMDGTVTLKDLRVELLGETSIAEC K E E L K D 0 0 0 1 0 1 2 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 11 0 1249.586 Q16531;F5GY55 Q16531 288 298 DDB1 DNA damage-binding protein 1 yes no 2 0.00014645 90.15 By MS/MS 1 1.5113 1.3144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5113 1.3144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7220500 2624000 4596500 0 0 0 0 0 0 0 0 0 7220500 2624000 4596500 0 0 0 0 0 0 6173 2985 6429 31344 31408;31409 31409 2 EEQSQITSQVTGQIGWR KTFITQQGIKSQHTKEEQSQITSQVTGQIG QSQITSQVTGQIGWRREGIKYRRNELFLDV K E E W R R 0 1 0 0 0 4 2 2 0 2 0 0 0 0 0 2 2 1 0 1 0 0 17 0 1945.9494 A0A087WY71;E9PFW3;Q96CW1 A0A087WY71 145 161 AP2M1 AP-2 complex subunit mu yes no 2 5.0682E-05 62.14 By MS/MS 2 0.99195 0.99594 5.7041 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99195 0.99594 5.7041 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7367900 3722200 3645700 0 0 0 0 0 0 7367900 3722200 3645700 0 0 0 0 0 0 0 0 0 6174 78 6430 31345;31346 31410;31411 31411 2 EESDDEAAVEEEEEEKKPK VEEPMEEEEAAKEEKEESDDEAAVEEEEEE DEAAVEEEEEEKKPKTKKVEKTVWDWELMN K E E P K T 2 0 0 2 0 0 9 0 0 0 0 3 0 0 1 1 0 0 0 1 0 0 19 2 2218.9601 P14625 P14625 304 322 HSP90B1 Endoplasmin yes yes 3 0.020101 17.863 By MS/MS 1 1.1619 1.1337 NaN 1 Median NaN NaN NaN 0 0 Median 1.1619 1.1337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1270400 528380 741990 0 0 0 1270400 528380 741990 0 0 0 0 0 0 0 0 0 0 0 0 6175 2006 6431 31347 31412 31412 1 EESESTAVGQAHSDISK PQASAQDETPITSAKEESESTAVGQAHSDI SESTAVGQAHSDISKDMSEASEKTMTVEVE K E E S K D 2 0 0 1 0 1 3 1 1 1 0 1 0 0 0 4 1 0 0 1 0 0 17 0 1773.8017 Q02952 Q02952 1616 1632 AKAP12 A-kinase anchor protein 12 yes yes 3 8.7444E-06 51.798 By MS/MS 2 1.1445 1.0059 15.658 2 Median NaN NaN NaN 0 0 Median 1.1445 1.0059 15.658 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9513700 4481400 5032300 0 0 0 9513700 4481400 5032300 0 0 0 0 0 0 0 0 0 0 0 0 6176 2705 6432 31348;31349 31413;31414;31415;31416 31414 4 EESGKPGAHVTVK SIDGRVVEPKRAVAREESGKPGAHVTVKKL AREESGKPGAHVTVKKLFVGGIKEDTEEHH R E E V K K 1 0 0 0 0 0 2 2 1 0 0 2 0 0 1 1 1 0 0 2 0 0 13 1 1337.6939 P22626;A0A087WUI2 P22626 100 112 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 0.0004142 56.139 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 1 2 6 4 0.91415 0.90011 14.389 16 Median NaN NaN NaN 0 0 Median 1.0793 0.97808 8.2306 3 0 Median 0.85011 0.88971 NaN 1 0 Median 0.9144 0.81198 12.631 2 0 Median 0.84186 0.90401 19.034 6 0 Plateau 1.0956 0.93786 3.1504 4 0 Median 82821000 43389000 39432000 0 0 0 2809800 1370600 1439200 5596800 3004900 2591900 378180 175830 202350 66784000 35466000 31318000 7252400 3371700 3880700 6177 2103 6433 31350;31351;31352;31353;31354;31355;31356;31357;31358;31359;31360;31361;31362;31363;31364;31365 31417;31418;31419;31420;31421;31422;31423;31424;31425;31426;31427;31428;31429;31430;31431;31432;31433;31434;31435 31431 19 EESGKPGAHVTVKK SIDGRVVEPKRAVAREESGKPGAHVTVKKL REESGKPGAHVTVKKLFVGGIKEDTEEHHL R E E K K L 1 0 0 0 0 0 2 2 1 0 0 3 0 0 1 1 1 0 0 2 0 0 14 2 1465.7889 P22626;A0A087WUI2 P22626 100 113 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3 0.052566 30.483 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6178 2103 6434 31366 31436 31436 1 EESLEKEPEYVPWTATSGPGGIR AASHYRQNRNSLYRREESLEKEPEYVPWTA EYVPWTATSGPGGIRTVIIRQHEIVLKVAY R E E I R T 1 1 0 0 0 0 5 3 0 1 1 1 0 0 3 2 2 1 1 1 0 0 23 1 2531.218 Q8WUM0 Q8WUM0 753 775 NUP133 Nuclear pore complex protein Nup133 yes yes 3 4.994E-13 74.444 By MS/MS 1 0.57092 0.64722 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57092 0.64722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14200000 8025400 6175100 0 0 0 0 0 0 14200000 8025400 6175100 0 0 0 0 0 0 0 0 0 6179 3492 6435 31367 31437 31437 1 EESPENLFLELEK MSINAAELKQLLQSKEESPENLFLELEKLV SKEESPENLFLELEKLVLEHSKDDDNLDSL K E E E K L 0 0 1 0 0 0 5 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 13 0 1575.7668 Q69YN4;H0YB68 Q69YN4 1446 1458 KIAA1429 Protein virilizer homolog yes no 2 0.0032934 44.765 By MS/MS 1 0.79627 0.88751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79627 0.88751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3359500 1968900 1390700 0 0 0 0 0 0 3359500 1968900 1390700 0 0 0 0 0 0 0 0 0 6180 3130 6436 31368 31438 31438 1 EESQIPVDEVFFHR DIRHLPVNSKEFLAKEESQIPVDEVFFHRY KEESQIPVDEVFFHRYYKKVAVKEKQKRDA K E E H R Y 0 1 0 1 0 1 3 0 1 1 0 0 0 2 1 1 0 0 0 2 0 0 14 0 1730.8264 Q03701 Q03701 803 816 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.00027354 52.265 By MS/MS By matching 1 1 1.2757 1.2552 21.05 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98335 1.0816 NaN 1 0 Median 1.6549 1.4566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6006100 3003300 3002800 0 0 0 0 0 0 5788100 2929800 2858300 217950 73494 144460 0 0 0 0 0 0 6181 2710 6437 31369;31370 31439;31440 31440 2 EESWGPPR PLVKPGGWREKEKAREESWGPPRESRPSEE REKEKAREESWGPPRESRPSEEREWDREKE R E E P R E 0 1 0 0 0 0 2 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 8 0 956.43519 Q14152 Q14152 1186 1193 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.01866 47.743 By MS/MS 1 0.85331 0.71183 NaN 1 Median NaN NaN NaN 0 0 Median 0.85331 0.71183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1548500 805260 743250 0 0 0 1548500 805260 743250 0 0 0 0 0 0 0 0 0 0 0 0 6182 2860 6438 31371 31441 31441 1 EETEELKR KRSQIYGSRQIILEKEETEELKRFDDPGLM RQIILEKEETEELKRFDDPGLMLMGFKPLV K E E K R F 0 1 0 0 0 0 4 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 8 1 1032.5088 P12956;B1AHC9 P12956 332 339 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.01717 55.676 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.95844 0.91526 10.991 5 Median 0.87756 0.84548 NaN 1 0 Median 0.97036 0.91526 NaN 1 0 Median 0.95844 1.0172 NaN 1 0 Median 1.1023 1.0107 NaN 1 0 Median 0.79279 0.79146 NaN 1 0 Median NaN NaN NaN 0 0 Median 5681500 2766600 2914900 368410 158550 209860 764730 346440 418290 3955600 1968900 1986700 407410 194710 212700 185380 98017 87363 0 0 0 6183 1985 6439 31372;31373;31374;31375;31376 31442 31442 1 EETPGQRPAVTETHQLAELNEK FRLMLLEKDVNPGGKEETPGQRPAVTETHQ PAVTETHQLAELNEKKNERLRAAFGISDSY K E E E K K 2 1 1 0 0 2 5 1 1 0 2 1 0 0 2 0 3 0 0 1 0 0 22 1 2476.2194 Q9UQ35;I3L4D8;I3L1I8;I3L182;A0A087X1W1;I3L1C0 Q9UQ35 109 130 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3;4 4.732E-26 136.14 By MS/MS By MS/MS By matching By matching 4 2 1 1 0.70538 0.72361 26.715 8 Median 0.72745 0.76073 5.2366 4 1 Median 0.84566 0.77907 37.68 2 1 Median 0.51076 0.57977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46162 0.41181 NaN 1 0 Median 108460000 58170000 50287000 56865000 30981000 25884000 48722000 25316000 23406000 1646700 1013700 632950 0 0 0 0 0 0 1222500 859760 362740 6184 4359 6440 31377;31378;31379;31380;31381;31382;31383;31384 31443;31444;31445;31446;31447;31448 31447 6 EETQPPVALK RKNPLPPSVGVVDKKEETQPPVALKKEGIR VVDKKEETQPPVALKKEGIRRVGRRPDQQL K E E L K K 1 0 0 0 0 1 2 0 0 0 1 1 0 0 2 0 1 0 0 1 0 0 10 0 1110.5921 Q8NC51 Q8NC51 93 102 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0090761 45.68 By MS/MS 1 0.79355 0.68086 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79355 0.68086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4220600 2295000 1925600 0 0 0 0 0 0 0 0 0 4220600 2295000 1925600 0 0 0 0 0 0 6185 3414 6441 31385 31449 31449 1 EETQPPVALKK RKNPLPPSVGVVDKKEETQPPVALKKEGIR VDKKEETQPPVALKKEGIRRVGRRPDQQLQ K E E K K E 1 0 0 0 0 1 2 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1238.6871 Q8NC51 Q8NC51 93 103 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.0040742 51.113 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 0.80553 0.78705 14.19 10 Median 0.72223 0.69444 14.758 2 0 Median 0.84869 0.796 7.0954 2 0 Median 0.81785 0.86205 21.373 3 0 Plateau 0.87246 0.87209 4.1223 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29782000 16343000 13439000 7953200 4917900 3035300 13044000 6695700 6348600 4515700 2499600 2016100 4268300 2229400 2038800 0 0 0 0 0 0 6186 3414 6442 31386;31387;31388;31389;31390;31391;31392;31393;31394;31395 31450;31451;31452;31453;31454;31455;31456;31457;31458 31456 9 EETVLATVQALQTASHLSQQADLR ASQEALSALTARLSKEETVLATVQALQTAS ALQTASHLSQQADLRSIVEEIEDLVARLDE K E E L R S 4 1 0 1 0 4 2 0 1 0 4 0 0 0 0 2 3 0 0 2 0 0 24 0 2608.3457 P04844 P04844 155 178 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 3 3.3476E-18 77.681 By MS/MS By MS/MS 2 3 1.2444 1.1291 8.6459 5 Median 1.1775 1.1906 7.4986 2 0 Median 1.3151 1.0912 8.4548 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17473000 8063900 9408900 4468200 1916300 2551900 13005000 6147600 6857000 0 0 0 0 0 0 0 0 0 0 0 0 6187 1854 6443 31396;31397;31398;31399;31400 31459;31460;31461;31462;31463 31463 5 EETVNDPEEAGHR AGSTSIPKRKKSTPKEETVNDPEEAGHRSG PKEETVNDPEEAGHRSGSKKKRKFSKEEPV K E E H R S 1 1 1 1 0 0 4 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 13 0 1481.6383 O00567 O00567 541 553 NOP56 Nucleolar protein 56 yes yes 2;3 7.9622E-05 85.731 By MS/MS By matching By matching 2 1 1 0.8834 0.83873 27.177 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8834 0.91754 8.8376 2 0 Median 0.94483 0.81613 NaN 1 0 Median 0.51927 0.52339 NaN 1 0 Median NaN NaN NaN 0 0 Median 12734000 6825900 5908000 0 0 0 0 0 0 11586000 6109800 5475800 191480 108580 82904 956860 607580 349280 0 0 0 6188 1472 6444 31401;31402;31403;31404 31464;31465;31466;31467;31468 31468 5 EEVDQVAR VKEFSPKLVGLTGTREEVDQVARAYRVYYS VGLTGTREEVDQVARAYRVYYSPGPKDEDE R E E A R A 1 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 8 0 944.45632 J3QL56;O75880 J3QL56 201 208 SCO1 Protein SCO1 homolog, mitochondrial yes no 2 0.0094683 60.76 By MS/MS By matching 1 1 1.233 1.0809 22.829 2 Median 0.97792 0.91978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5546 1.2703 NaN 1 0 Median 1623500 799900 823570 1226100 640290 585780 0 0 0 0 0 0 0 0 0 0 0 0 397400 159600 237790 6189 1339 6445 31405;31406 31469 31469 1 EEVGDFIQR LYSLLSFVEPDLFSKEEVGDFIQRYQDIEK PDLFSKEEVGDFIQRYQDIEKESESASELH K E E Q R Y 0 1 0 1 0 1 2 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 0 1091.5247 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C0F0 Q86WJ1 228 236 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00058663 111.82 By MS/MS By MS/MS 1 1 1.1621 1.1048 31.342 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83391 0.88515 NaN 1 0 Median 1.6196 1.3788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13810000 6679000 7130500 0 0 0 0 0 0 11547000 5918800 5627900 2262900 760250 1502600 0 0 0 0 0 0 6190 3293 6446 31407;31408 31470;31471;31472 31471 3 EEVKEAYMGNVLQGGEGQAPTR SIAIQGAIEKAGIPKEEVKEAYMGNVLQGG MGNVLQGGEGQAPTRQAVLGAGLPISTPCT K E E T R Q 2 1 1 0 0 2 4 4 0 0 1 1 1 0 1 0 1 0 1 2 0 0 22 1 2362.1223 P24752;H0YEL7;E9PRQ6 P24752 84 105 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 3 5.0805E-26 135.21 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.77287 0.88085 22.375 6 Median 0.76488 0.8194 NaN 1 0 Median 0.71083 0.61748 NaN 1 0 Median 0.77287 0.88085 0.50598 2 0 Median 1.2781 1.1161 8.4639 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47996000 24422000 23574000 4299600 2366500 1933100 800150 400800 399350 37243000 19229000 18014000 5653300 2425500 3227900 0 0 0 0 0 0 6191 2126 6447;6448 31409;31410;31411;31412;31413;31414 31473;31474;31475;31476;31477;31478;31479 31474 889 7 EEVKLEAHIR RIFGKLKEENFFNPKEEVKLEAHIRVPSST FFNPKEEVKLEAHIRVPSSTAGRVIGKGGK K E E I R V 1 1 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1222.667 F8W930;Q9Y6M1;O00425 F8W930 512 521 IGF2BP2;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 3 no no 3 0.00010852 85.533 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 3 2 3 1.0926 1.0938 12.849 13 Median 0.92353 0.92571 NaN 1 0 Median 1.2914 1.1457 2.2518 2 1 Median 0.9052 0.98054 21.555 2 0 Median 1.1929 1.0938 18.409 3 0 Median 1.0786 1.1532 2.1507 2 0 Median 1.1245 0.96337 3.2472 3 0 Plateau 56268000 27426000 28841000 16555000 9314900 7240000 10037000 4471100 5565900 4352200 2131200 2221000 3106600 1323400 1783100 8693600 4359600 4334000 13523000 5826300 7697100 6192 1088;1462 6449 31415;31416;31417;31418;31419;31420;31421;31422;31423;31424;31425;31426;31427 31480;31481;31482;31483;31484;31485;31486;31487;31488;31489;31490 31488 11 EEVKLETHIR RIYGKLKEENFFGPKEEVKLETHIRVPASA FFGPKEEVKLETHIRVPASAAGRVIGKGGK K E E I R V 0 1 0 0 0 0 3 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1252.6776 Q9NZI8 Q9NZI8 484 493 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 0.00012133 98.033 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 1 7 1.3157 1.175 45.638 16 Median 1.411 1.4153 1.6948 2 0 Median 1.8552 1.6898 22.51 3 0 Median 1.4203 1.5074 NaN 1 0 Median 1.2497 1.1258 9.4726 2 1 Median 0.25444 0.29984 NaN 1 0 Median 1.2139 1.0773 31.139 7 1 Median 97641000 41958000 55682000 27188000 11728000 15461000 16795000 6107600 10687000 6001700 2563400 3438200 3316900 1410000 1906900 1801300 1276100 525170 42538000 18874000 23664000 6193 4188 6450 31428;31429;31430;31431;31432;31433;31434;31435;31436;31437;31438;31439;31440;31441;31442;31443 31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502;31503;31504;31505;31506;31507;31508;31509;31510 31498 20 EEVQSLREEAEK ASNSARAAERSSALREEVQSLREEAEKQRV ALREEVQSLREEAEKQRVASENLRQELTSQ R E E E K Q 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1445.6998 Q14980 Q14980 1292 1303 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 4.3646E-06 168.22 By MS/MS By MS/MS By MS/MS 2 1 2 0.88047 0.83908 7.4392 5 Median NaN NaN NaN 0 0 Median 0.94306 0.89508 9.1379 2 0 Median 0.69644 0.83509 NaN 1 0 Median 0.92046 0.8886 10.137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25808000 13473000 12334000 0 0 0 7191500 3515100 3676400 6661000 3665300 2995700 11955000 6293000 5662100 0 0 0 0 0 0 6194 2905 6451 31444;31445;31446;31447;31448 31511;31512;31513;31514;31515;31516;31517;31518;31519;31520 31520 10 EEVQSLREEAEKQR ASNSARAAERSSALREEVQSLREEAEKQRV REEVQSLREEAEKQRVASENLRQELTSQAE R E E Q R V 1 2 0 0 0 2 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 14 2 1729.8595 Q14980 Q14980 1292 1305 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 0.00016234 68.83 By MS/MS 2 0.76884 0.92391 7.9335 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76884 0.92391 7.9335 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13580000 7650500 5929700 0 0 0 0 0 0 13580000 7650500 5929700 0 0 0 0 0 0 0 0 0 6195 2905 6452 31449;31450 31521;31522 31521 2 EEVSIEVLK THLILFFRTLGLQTKEEVSIEVLKTYIQLL LGLQTKEEVSIEVLKTYIQLLIREKHTNLI K E E L K T 0 0 0 0 0 0 3 0 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1044.5703 P57740 P57740 566 574 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.0022569 73.248 By matching By MS/MS By MS/MS 1 1 1 1.5218 1.3121 16.213 3 Median NaN NaN NaN 0 0 Median 1.674 1.4874 NaN 1 0 Median 0.98726 1.0783 NaN 1 0 Median 1.5218 1.3121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15988000 7182700 8805200 0 0 0 1529500 533270 996240 10127000 4945600 5181000 4331600 1703800 2627900 0 0 0 0 0 0 6196 2518 6453 31451;31452;31453 31523;31524 31523 2 EEVSSWR RDDRDRRGPPLRSEREEVSSWRRADDRKDD GPPLRSEREEVSSWRRADDRKDDRVEERDP R E E W R R 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 7 0 891.40865 Q14152 Q14152 1305 1311 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.013611 76.035 By matching By MS/MS 1 1 1.0523 0.96786 13.847 2 Median 0.87515 0.87759 NaN 1 0 Median 1.2654 1.0674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3348000 1520200 1827800 1082400 574350 508090 2265500 945870 1319700 0 0 0 0 0 0 0 0 0 0 0 0 6197 2860 6454 31454;31455 31525 31525 1 EEVTELLAR ITEHELVPEHVVMTKEEVTELLARYKLREN HVVMTKEEVTELLARYKLRENQLPRIQAGD K E E A R Y 1 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1058.5608 A0A087WWX0;A0A087WVZ9;A0A0A0MQR7;P19388 A0A087WWX0 78 86 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 0.0020081 75.213 By MS/MS By matching 1 1 1.0088 0.88617 7.7269 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87361 0.83905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1648 0.93594 NaN 1 0 Median 31488000 16034000 15455000 0 0 0 0 0 0 22717000 12218000 10499000 0 0 0 0 0 0 8771400 3815900 4955500 6198 47 6455 31456;31457 31526;31527 31526 2 EEVVGGDDSDGLR TQVHHHQEVILVQTREEVVGGDDSDGLRAE TREEVVGGDDSDGLRAEDGFEDQILIPVPA R E E L R A 0 1 0 3 0 0 2 3 0 0 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1346.595 P25490 P25490 110 122 YY1 Transcriptional repressor protein YY1 yes yes 2 7.4492E-07 143.89 By MS/MS By MS/MS 2 1 1.0521 0.9455 5.5915 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86575 0.88507 5.4942 2 0 Median 1.111 0.94891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61359000 29481000 31878000 0 0 0 0 0 0 22947000 11764000 11183000 38412000 17717000 20695000 0 0 0 0 0 0 6199 2133 6456 31458;31459;31460 31528;31529;31530;31531;31532 31531 5 EEVVLLTHGDSVDK ISVDNTCSLFRGLQKEEVVLLTHGDSVDKV KEEVVLLTHGDSVDKVADGFKVVARSGNIV K E E D K V 0 0 0 2 0 0 2 1 1 0 2 1 0 0 0 1 1 0 0 3 0 0 14 0 1539.7781 P49915 P49915 146 159 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 0.00023594 68.069 By matching By MS/MS 1 3 1.1286 0.99749 3.2188 4 Median NaN NaN NaN 0 0 Median 1.105 0.99583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1528 0.99915 3.9415 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9199100 4382900 4816200 0 0 0 844300 392900 451400 0 0 0 8354800 3990000 4364800 0 0 0 0 0 0 6200 2405 6457 31461;31462;31463;31464 31533;31534;31535;31536;31537 31533 5 EEVVQKEQE VANPNSAIFGGARPREEVVQKEQE______ GGARPREEVVQKEQE_______________ R E E Q E - 0 0 0 0 0 2 4 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 9 1 1116.5299 Q15056 Q15056 240 248 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.0095015 75.213 By matching By MS/MS By matching By MS/MS 2 1 1 1 1.1173 0.93344 20.341 5 Median 1.2122 1.1669 31.575 2 0 Median 1.0426 0.88811 NaN 1 0 Median 1.1237 1.0688 NaN 1 0 Median 1.1173 0.92528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12084000 5646900 6436800 4530900 2089300 2441600 1441100 746100 694970 3581300 1610200 1971000 2530600 1201300 1329200 0 0 0 0 0 0 6201 2922 6458 31465;31466;31467;31468;31469 31538;31539 31538 2 EEVVTVETWQEGSLK AALRMLLADQGQSWKEEVVTVETWQEGSLK EEVVTVETWQEGSLKASCLYGQLPKFQDGD K E E L K A 0 0 0 0 0 1 4 1 0 0 1 1 0 0 0 1 2 1 0 3 0 0 15 0 1732.8519 P09211;A8MX94;A0A087X2E9 P09211 31 45 GSTP1 Glutathione S-transferase P yes no 2 1.1153E-07 142.07 By MS/MS By matching 1 1 1.1395 1.0114 14.953 2 Median 0.97613 0.90988 NaN 1 0 Median 1.3301 1.1242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17383000 8510500 8872100 14590000 7140000 7449900 2792700 1370500 1422200 0 0 0 0 0 0 0 0 0 0 0 0 6202 1912 6459 31470;31471 31540;31541 31540 2 EEWHGHVTALSVAPEFR LMGYIMGKAEGSVAREEWHGHVTALSVAPE WHGHVTALSVAPEFRRLGLAAKLMELLEEI R E E F R R 2 1 0 0 0 0 3 1 2 0 1 0 0 1 1 1 1 1 0 2 0 0 17 0 1963.9541 A8MZB2;P61599 A8MZB2 56 72 NAA20 N-alpha-acetyltransferase 20 yes no 3 0.046768 20.368 By MS/MS 1 2.2286 2.257 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2286 2.257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307100 1339900 1967200 0 0 0 0 0 0 3307100 1339900 1967200 0 0 0 0 0 0 0 0 0 6203 550 6460 31472 31542 31542 1 EEYEGPNK RGMGPGTPAGYGRGREEYEGPNKKPRF___ AGYGRGREEYEGPNKKPRF___________ R E E N K K 0 0 1 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 8 0 964.41379 P23246 P23246 696 703 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.028842 40.103 By matching By MS/MS By matching 1 1 1 0.79534 0.83 18.006 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77892 0.81297 NaN 1 0 Median 1.2896 1.1215 NaN 1 0 Median 0.79534 0.83 NaN 1 0 Median NaN NaN NaN 0 0 Median 2734800 1369900 1364900 0 0 0 0 0 0 1440400 767890 672470 1086700 493310 593440 207670 108710 98961 0 0 0 6204 2107 6461 31473;31474;31475 31543 31543 1 EEYEGPNKKPR RGMGPGTPAGYGRGREEYEGPNKKPRF___ GRGREEYEGPNKKPRF______________ R E E P R F 0 1 1 0 0 0 3 1 0 0 0 2 0 0 2 0 0 0 1 0 0 0 11 2 1345.6626 P23246 P23246 696 706 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.0012118 49.35 By matching By MS/MS 1 2 0.6422 0.80005 9.8336 3 Median 0.62147 0.70639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69498 0.82838 4.9215 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 933730 549620 384110 87178 43729 43449 0 0 0 846550 505890 340660 0 0 0 0 0 0 0 0 0 6205 2107 6462 31476;31477;31478 31544;31545 31545 2 EEYLLLR DSVIFTLYNYASNQREEYLLLRLFKTALQE YNYASNQREEYLLLRLFKTALQEEIKSKVD R E E L R L 0 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 934.51238 P46940;A0A0J9YXZ5;H0YLE8 P46940 1018 1024 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.018435 62.842 By MS/MS By MS/MS 1 2 1.1105 0.95858 2.4232 3 Median 1.0351 0.99884 NaN 1 0 Median 1.1161 0.9578 0.11457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10109000 4757500 5351500 4116300 2017400 2098900 5992700 2740100 3252600 0 0 0 0 0 0 0 0 0 0 0 0 6206 2350 6463 31479;31480;31481 31546;31547;31548;31549 31547 4 EEYNGVIEEFLATGEK RSRVWAEPCLIDAAKEEYNGVIEEFLATGE EYNGVIEEFLATGEKLFGPYVWGRYDLLFM K E E E K L 1 0 1 0 0 0 5 2 0 1 1 1 0 1 0 0 1 0 1 1 0 0 16 0 1826.8574 Q9H4A4;C9JMZ3;H7C2T3 Q9H4A4 261 276 RNPEP Aminopeptidase B yes no 2 0.00034546 48.004 By MS/MS 1 1.3671 1.2035 NaN 1 Median NaN NaN NaN 0 0 Median 1.3671 1.2035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 770580 344520 426060 0 0 0 770580 344520 426060 0 0 0 0 0 0 0 0 0 0 0 0 6207 3964 6464 31482 31550 31550 1 EEYQLVQVEQK RAGRTGVCICFYQHKEEYQLVQVEQKAGIK YQHKEEYQLVQVEQKAGIKFKRIGVPSATE K E E Q K A 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1391.6933 Q9NR30 Q9NR30 545 555 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.000186 94.309 By MS/MS By MS/MS By MS/MS 1 1 1 1.0941 0.95608 45.165 3 Median NaN NaN NaN 0 0 Median 1.0941 0.95608 NaN 1 0 Median 1.4358 1.5539 NaN 1 1 Median 0.72753 0.63021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37890000 16181000 21709000 0 0 0 9192900 4567000 4625900 23326000 8691900 14634000 5370300 2921900 2448400 0 0 0 0 0 0 6208 4076 6465 31483;31484;31485 31551;31552;31553 31553 3 EFAATNSYLGYFGDAK ALLQKFVPEIRDGQREFAATNSYLGYFGDA FAATNSYLGYFGDAKSKYKRIYVKFIENAN R E F A K S 3 0 1 1 0 0 1 2 0 0 1 1 0 2 0 1 1 0 2 0 0 0 16 0 1752.7995 A0A3B3IRW6;Q2KHR3;H0YCQ7 A0A3B3IRW6 1533 1548 QSER1 Glutamine and serine-rich protein 1 yes no 2 0.0013263 55.401 By MS/MS 2 0.80951 0.90228 4.574 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80951 0.90228 4.574 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6373300 3456300 2917000 0 0 0 0 0 0 6373300 3456300 2917000 0 0 0 0 0 0 0 0 0 6209 418 6466 31486;31487 31554;31555 31554 2 EFADSLGIPFLETSAK SDLTTKKVVDNTTAKEFADSLGIPFLETSA FADSLGIPFLETSAKNATNVEQAFMTMAAE K E F A K N 2 0 0 1 0 0 2 1 0 1 2 1 0 2 1 2 1 0 0 0 0 0 16 0 1723.8669 Q9H0U4;E9PLD0;Q92928;E7END7;P62820 Q9H0U4 138 153 RAB1B;RAB1C;RAB1A Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A no no 2 8.6559E-05 74.326 By MS/MS By MS/MS By matching By matching By matching 5 6 1 1 2 0.99342 0.91686 35.91 15 Median 0.93642 0.90457 6.5966 5 0 Median 1.0913 0.93076 18.866 6 0 Median 0.95242 0.90644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.094 1.107 NaN 1 0 Median 2.0081 1.6645 94.872 2 0 Median 78073000 37563000 40510000 59549000 28937000 30612000 16869000 7801300 9067500 1201700 604360 597310 0 0 0 194530 91232 103300 259050 129300 129750 6210 3929;863 6467 31488;31489;31490;31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502 31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569 31564 14 EFAGEDTSDLFLEER PAFKEHLRDFLVQIKEFAGEDTSDLFLEER EFAGEDTSDLFLEEREIALRQADEEKHKRQ K E F E R E 1 1 0 2 0 0 4 1 0 0 2 0 0 2 0 1 1 0 0 0 0 0 15 0 1756.7792 O14980 O14980 1024 1038 XPO1 Exportin-1 yes yes 2 8.4176E-10 111.91 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2571 1.1869 90.069 4 Median 0.95106 0.91566 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0725 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median 6.0792 6.4801 NaN 1 1 Median 1.4736 1.2269 NaN 1 0 Median 22192000 10618000 11574000 16780000 8304800 8475200 0 0 0 4064400 1985300 2079100 0 0 0 1045100 196330 848750 302830 131880 170940 6211 1510 6468 31503;31504;31505;31506 31570;31571;31572;31573;31574;31575 31571 6 EFALSNLK YNACTLHGGKGQEQREFALSNLKAGAKDIL GKGQEQREFALSNLKAGAKDILVATDVAGR R E F L K A 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 8 0 920.49673 Q9BUQ8 Q9BUQ8 704 711 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0034744 94.006 By MS/MS By MS/MS 1 1 0.97231 0.93024 13.197 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77575 0.84736 NaN 1 0 Median 1.2187 1.0212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11087000 5736800 5350400 0 0 0 0 0 0 10008000 5243700 4764400 1079100 493120 585940 0 0 0 0 0 0 6212 3842 6469 31507;31508 31576;31577;31578 31577 3 EFANFTFPR KRYREFAILHQNLKREFANFTFPRLPGKWP HQNLKREFANFTFPRLPGKWPFSLSEQQLD R E F P R L 1 1 1 0 0 0 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 9 0 1127.54 Q96L92;A0A2R8Y8A7 Q96L92 210 218 SNX27 Sorting nexin-27 yes no 2 0.006571 54.157 By MS/MS By matching 1 1 1.158 1.084 0.41813 2 Median 1.0913 1.0872 NaN 1 0 Median 1.2288 1.0808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3461100 1686000 1775100 2841900 1409600 1432200 619210 276380 342830 0 0 0 0 0 0 0 0 0 0 0 0 6213 391 6470 31509;31510 31579;31580 31580 2 EFANIHPFVPLDQAQGYQQLFR MKLNSSSELAPITWKEFANIHPFVPLDQAQ FVPLDQAQGYQQLFRELEKDLCELTGYDQV K E F F R E 2 1 1 1 0 4 1 1 1 1 2 0 0 3 2 0 0 0 1 1 0 0 22 0 2617.3078 P23378 P23378 575 596 GLDC Glycine dehydrogenase (decarboxylating), mitochondrial yes yes 3 0.039439 10.989 By matching By MS/MS 1 1 0.99957 0.97117 43.624 2 Median NaN NaN NaN 0 0 Median 1.4968 1.3221 NaN 1 0 Median 0.66751 0.7134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2420800 1614800 806090 0 0 0 209440 102080 107360 2211400 1512700 698730 0 0 0 0 0 0 0 0 0 6214 2110 6471 31511;31512 31581;31582 31581 2 EFASHLQQLQDALNELTEEHSK NQLSEENGDLSFKLREFASHLQQLQDALNE QLQDALNELTEEHSKATQEWLEKQAQLEKE R E F S K A 2 0 1 1 0 3 4 0 2 0 4 1 0 1 0 2 1 0 0 0 0 0 22 0 2566.23 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 329 350 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 4.017E-26 132.01 By MS/MS By matching 4 1 1.2856 1.1373 19.501 5 Median NaN NaN NaN 0 0 Median 1.1477 1.016 20.634 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4714 1.2633 NaN 1 0 Median 70722000 31944000 38778000 0 0 0 70547000 31888000 38659000 0 0 0 0 0 0 0 0 0 175110 56321 118790 6215 2905;77 6472 31513;31514;31515;31516;31517 31583;31584;31585;31586;31587 31584 5 EFDEDSEDR TADLLSNGIDVYPQKEFDEDSEDRLVNEKF DVYPQKEFDEDSEDRLVNEKFREMIPFAVV K E F D R L 0 1 0 3 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 9 0 1140.4207 Q9UHD8 Q9UHD8 477 485 SEPT9 Septin-9 yes yes 2 0.0014358 81.548 By MS/MS By MS/MS 1 4 1.3844 1.193 20.835 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0591 1.1129 NaN 1 0 Median 1.3865 1.1947 22.733 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14377000 6421800 7954700 0 0 0 0 0 0 4552600 2264000 2288700 9823900 4157800 5666100 0 0 0 0 0 0 6216 4276 6473 31518;31519;31520;31521;31522 31588;31589;31590;31591;31592;31593;31594;31595;31596 31590 9 EFDEDSEDRLVNEK TADLLSNGIDVYPQKEFDEDSEDRLVNEKF KEFDEDSEDRLVNEKFREMIPFAVVGSDHE K E F E K F 0 1 1 3 0 0 4 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 14 1 1723.7537 Q9UHD8 Q9UHD8 477 490 SEPT9 Septin-9 yes yes 3 0.003637 33.273 By matching By MS/MS 1 2 1.0196 1.0573 18.16 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93073 1.0573 NaN 1 0 Median 1.2423 1.1682 24.359 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6217200 3113400 3103800 0 0 0 0 0 0 4567100 2445300 2121800 1650100 668110 981950 0 0 0 0 0 0 6217 4276 6474 31523;31524;31525 31597 31597 1 EFDELNPSAQR FGQDEDVTSKAFTGREFDELNPSAQRDACL FTGREFDELNPSAQRDACLNARCFARVEPS R E F Q R D 1 1 1 1 0 1 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 11 0 1304.5997 P16615;H7C5W9 P16615 656 666 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.00011141 122.13 By MS/MS By MS/MS 4 3 1.121 0.99306 7.2731 7 Median 1.01 0.99116 8.902 4 0 Median 1.1786 0.99306 6.0387 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64634000 29814000 34820000 24128000 11565000 12563000 40506000 18249000 22257000 0 0 0 0 0 0 0 0 0 0 0 0 6218 2031 6475 31526;31527;31528;31529;31530;31531;31532 31598;31599;31600;31601;31602;31603;31604 31599 7 EFDMILGK NMFLRCVSELVIESREFDMILGKLENDGSR ELVIESREFDMILGKLENDGSRKPGVIDKF R E F G K L 0 0 0 1 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 8 0 951.47355 Q8N1F7;H3BVG0 Q8N1F7 579 586 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.038988 37.094 By matching By matching By MS/MS By matching By matching 1 1 2 1 2 1.242 1.2219 16.731 7 Median 1.2094 1.2219 NaN 1 0 Median 1.4527 1.3109 NaN 1 0 Median 1.0676 1.1739 3 2 0 Median 1.4081 1.2296 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6584 1.4028 36.244 2 0 Median 10208000 4829000 5378800 1127700 500060 627650 310750 119590 191160 7828500 3867700 3960800 503730 201200 302530 0 0 0 437130 140400 296730 6219 3356 6476 31533;31534;31535;31536;31537;31538;31539 31605;31606 31606 2 EFDPTITDASLSLPSR ERRQKRLQEALERQKEFDPTITDASLSLPS FDPTITDASLSLPSRRMQNDTAENETTEKE K E F S R R 1 1 0 2 0 0 1 0 0 1 2 0 0 1 2 3 2 0 0 0 0 0 16 0 1747.8628 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 114 129 CALD1 Caldesmon yes no 2 0.028184 36.847 By MS/MS 1 0.54643 0.58378 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54643 0.58378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2303400 1520600 782730 0 0 0 0 0 0 2303400 1520600 782730 0 0 0 0 0 0 0 0 0 6220 928 6477 31540 31607 31607 1 EFEDPRDAPPPTR KHHNQPYCGIAPYIREFEDPRDAPPPTRAE IREFEDPRDAPPPTRAETREERMERKRREK R E F T R A 1 2 0 2 0 0 2 0 0 0 0 0 0 1 4 0 1 0 0 0 0 0 13 1 1525.7161 P08621 P08621 47 59 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 3 0.0063537 41.644 By MS/MS By MS/MS 1 2 0.51101 0.55193 16.182 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51101 0.55193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50546 0.54545 22.865 2 2 Median NaN NaN NaN 0 0 Median 18519000 12740000 5779500 0 0 0 0 0 0 3493700 2479500 1014300 0 0 0 15026000 10260000 4765200 0 0 0 6221 1905 6478 31541;31542;31543 31608;31609;31610;31611 31608 4 EFEEESKQPGVSEQQR DISSSLNSLADSNAREFEEESKQPGVSEQQ FEEESKQPGVSEQQRHQLKHRELFLSRQFE R E F Q R H 0 1 0 0 0 3 5 1 0 0 0 1 0 1 1 2 0 0 0 1 0 0 16 1 1905.8704 O94776 O94776 65 80 MTA2 Metastasis-associated protein MTA2 yes yes 3 4.2771E-05 54.501 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.85298 0.8258 8.6505 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77695 0.8258 NaN 1 0 Median 0.86052 0.80201 3.5569 2 0 Median 0.79326 0.87228 NaN 1 0 Median 1.1197 0.98093 NaN 1 1 Median 23202000 12140000 11062000 0 0 0 0 0 0 14366000 7592800 6773200 2803000 1506800 1296200 5162000 2677700 2484300 870630 362250 508380 6222 1723 6479 31544;31545;31546;31547;31548 31612;31613;31614;31615;31616;31617;31618 31613 7 EFEEGLVSQYK AEKSTKTRKETQKLREFEEGLVSQYKFYLE QKLREFEEGLVSQYKFYLENLEQMVKDWKQ R E F Y K F 0 0 0 0 0 1 3 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1327.6296 Q8WTT2 Q8WTT2 296 306 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.047302 45.137 By MS/MS 1 0.76596 0.78357 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76596 0.78357 NaN 1 1 Median NaN NaN NaN 0 0 Median 9652600 5228600 4424000 0 0 0 0 0 0 0 0 0 0 0 0 9652600 5228600 4424000 0 0 0 6223 3484 6480 31549 31619 31619 1 EFEEYIR PRCIKFSSSDRKKQREFEEYIRDKYITAKA SSDRKKQREFEEYIRDKYITAKADFRTLLK R E F I R D 0 1 0 0 0 0 3 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 984.45526 O14776;G3V220 O14776 1003 1009 TCERG1 Transcription elongation regulator 1 yes no 2 0.0052745 97.596 By matching By MS/MS By MS/MS 1 2 2 1.1592 1.0035 27.955 5 Median NaN NaN NaN 0 0 Median 1.1592 1.0059 NaN 1 0 Median 0.65074 0.73407 38.376 2 1 Median 1.2414 1.0726 9.4212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27561000 13329000 14232000 0 0 0 1295400 546330 749100 21332000 10612000 10720000 4933300 2170000 2763300 0 0 0 0 0 0 6224 1494 6481 31550;31551;31552;31553;31554 31620;31621;31622 31622 3 EFEFLMR VRQSPGPALARLEGREFEFLMRQPSVTIGR ALARLEGREFEFLMRQPSVTIGRNSSQGSV R E F M R Q 0 1 0 0 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 7 0 970.45824 P85037 P85037 113 119 FOXK1 Forkhead box protein K1 yes yes 2 0.012717 77.748 By matching By matching By MS/MS By matching 1 1 1 1 1.2896 1.1861 18.629 4 Median 0.93123 0.9303 NaN 1 0 Median 1.4466 1.3009 NaN 1 0 Median 1.3184 1.4077 NaN 1 0 Median 1.2614 1.0815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3724600 1617000 2107500 595420 340310 255110 242960 88242 154710 2089900 832640 1257300 796250 355810 440440 0 0 0 0 0 0 6225 2669 6482 31555;31556;31557;31558 31623;31624 31624 2 EFEKDKDDDEVFEK VTVNFRKLLLNRCQKEFEKDKDDDEVFEKK KEFEKDKDDDEVFEKKQKEMDEAATAEERG K E F E K K 0 0 0 4 0 0 4 0 0 0 0 3 0 2 0 0 0 0 0 1 0 0 14 2 1771.7788 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6 E7EX73 687 700 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.01642 24.275 By MS/MS By MS/MS 1 2 1.1219 1.2902 15.736 3 Median 0.92995 1.0182 NaN 1 0 Median 1.2729 1.3303 4.3218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6192200 2897300 3294800 2624200 1429100 1195200 3567900 1468200 2099700 0 0 0 0 0 0 0 0 0 0 0 0 6226 894 6483 31559;31560;31561 31625;31626 31626 2 EFEPASAR PEAASSRGSPVRVKREFEPASAREAPASVV SPVRVKREFEPASAREAPASVVPFVRVKRE R E F A R E 2 1 0 0 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 8 0 905.4243 B9A018;Q53GS9;F8WC91 B9A018 53 60 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0074447 67.032 By matching By MS/MS By matching 1 1 1 1.2752 1.3295 27.724 3 Plateau 0.92052 0.93309 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2802 1.3295 NaN 1 0 Median 0.91734 0.76967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7657800 3234100 4423700 1003900 510370 493500 0 0 0 5918800 2288900 3629900 735130 434860 300270 0 0 0 0 0 0 6227 654 6484 31562;31563;31564 31627 31627 1 EFEPLLNWMK DESEKTKESREAVEKEFEPLLNWMKDKALK EAVEKEFEPLLNWMKDKALKDKIEKAVVSQ K E F M K D 0 0 1 0 0 0 2 0 0 0 2 1 1 1 1 0 0 1 0 0 0 0 10 0 1305.6427 P14625 P14625 614 623 HSP90B1 Endoplasmin yes yes 2 0.00034627 86.833 By MS/MS By MS/MS By matching By matching 4 3 1 1 1.1153 0.99218 22.948 9 Median 0.97253 0.96783 16.941 4 0 Median 1.1889 1.0426 20.072 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6482 1.7189 NaN 1 0 Median 1.1153 0.98799 NaN 1 0 Median 106680000 48539000 58137000 8302500 4206300 4096200 98120000 44226000 53893000 0 0 0 0 0 0 222140 92580 129560 31785 13776 18010 6228 2006 6485 31565;31566;31567;31568;31569;31570;31571;31572;31573 31628;31629;31630 31630 3 EFESAIVEAAR GLHMTKGLALWEAYREFESAIVEAARPVAG EAYREFESAIVEAARPVAGFLSPFDREQTF R E F A R P 3 1 0 0 0 0 3 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 11 0 1220.6037 A0A499FI31;Q15020;A0A494C0L2;F8W667;F8VVK9;F8VZM2 A0A499FI31 233 243 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0059542 53.751 By MS/MS By matching By MS/MS 1 1 1 1.5076 1.266 28.131 3 Median NaN NaN NaN 0 0 Median 1.5076 1.266 NaN 1 0 Median 0.74116 0.81443 NaN 1 0 Median 1.6125 1.374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11909000 5705100 6203900 0 0 0 6980900 2696700 4284200 3472000 2485300 986670 1456100 523130 933000 0 0 0 0 0 0 6229 473 6486 31574;31575;31576 31631;31632 31631 2 EFESVLVDAFSHVAR DVIQNSKRKGPEFTREFESVLVDAFSHVAR EFESVLVDAFSHVAREADEGCKKPLERLLN R E F A R E 2 1 0 1 0 0 2 0 1 0 1 0 0 2 0 2 0 0 0 3 0 0 15 0 1704.8471 Q9NQG5 Q9NQG5 80 94 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2;3 0.0018004 38.634 By matching By matching By MS/MS By MS/MS 1 2 2 2 1.2175 1.0578 20.945 7 Median 1.2679 1.2767 NaN 1 0 Median 1.2599 1.0942 6.5261 2 0 Median 0.93008 0.90715 7.8086 2 0 Median NaN NaN NaN 0 0 Median 1.2323 1.3146 30.736 2 0 Median NaN NaN NaN 0 0 Median 9835100 4640000 5195100 171390 78854 92532 1337300 584470 752850 5390000 2654600 2735500 0 0 0 2936400 1322100 1614200 0 0 0 6230 4062 6487 31577;31578;31579;31580;31581;31582;31583 31633;31634;31635;31636 31634 4 EFETIER NTPCARIPRMTGEEKEFETIERDERYIHPQ PRMTGEEKEFETIERDERYIHPQQEAFSIQ K E F E R D 0 1 0 0 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 7 0 922.43961 Q10570 Q10570 1056 1062 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.031276 49.358 By MS/MS 1 0.75424 0.83474 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75424 0.83474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2496200 1439200 1057000 0 0 0 0 0 0 2496200 1439200 1057000 0 0 0 0 0 0 0 0 0 6231 2753 6488 31584 31637 31637 1 EFETLIK GASSSTNDASDPTTKEFETLIKDLSAENGL DASDPTTKEFETLIKDLSAENGLESLMLRS K E F I K D 0 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 7 0 878.47493 O75976 O75976 901 907 CPD Carboxypeptidase D no no 2 0.044246 43 By MS/MS 1 1.2636 1.1095 NaN 1 Median NaN NaN NaN 0 0 Median 1.2636 1.1095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1476400 675780 800660 0 0 0 1476400 675780 800660 0 0 0 0 0 0 0 0 0 0 0 0 6232 1714 6489 31585 31638 31638 1 EFEVYGPIK VARVNYDTTESKLRREFEVYGPIKRIHMVY ESKLRREFEVYGPIKRIHMVYSKRSGKPRG R E F I K R 0 0 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 9 0 1080.5492 P08621;M0QYR1 P08621 122 130 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.012368 46.426 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 0.97408 0.85095 20.706 6 Median NaN NaN NaN 0 0 Median 0.99713 0.89272 6.3699 2 0 Median 0.9734 0.94206 NaN 1 0 Median 0.97477 0.8381 NaN 1 0 Median 0.56556 0.53938 NaN 1 0 Median 0.99568 0.8485 NaN 1 0 Median 31296000 15685000 15611000 0 0 0 913280 371020 542260 24272000 11998000 12274000 1845100 946480 898590 3633300 2066700 1566600 632590 303310 329280 6233 1905 6490 31586;31587;31588;31589;31590;31591 31639;31640;31641 31639 3 EFEVYGPIKR VARVNYDTTESKLRREFEVYGPIKRIHMVY SKLRREFEVYGPIKRIHMVYSKRSGKPRGY R E F K R I 0 1 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 10 1 1236.6503 P08621;M0QYR1 P08621 122 131 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2;3 3.6253E-15 183.24 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 4 6 4 1.0076 1.022 17.901 22 Median 1.0193 1.024 43.483 2 1 Median 1.2353 1.12 NaN 1 0 Median 0.86821 0.98303 27.646 5 0 Median 1.1472 1.0897 17.155 4 0 Median 0.99725 1.0307 9.3235 6 1 Median 1.1251 1.0117 10.824 4 1 Median 306560000 155550000 151020000 16463000 8742300 7720700 174040 90796 83241 148160000 75630000 72531000 10978000 4938200 6039700 111270000 57681000 53592000 19513000 8463800 11050000 6234 1905 6491 31592;31593;31594;31595;31596;31597;31598;31599;31600;31601;31602;31603;31604;31605;31606;31607;31608;31609;31610;31611;31612;31613 31642;31643;31644;31645;31646;31647;31648;31649;31650;31651;31652;31653;31654;31655;31656;31657;31658 31645 17 EFFNGKEPSR VGGSTRIPKIQQLVKEFFNGKEPSRGINPD QQLVKEFFNGKEPSRGINPDEAVAYGAAVQ K E F S R G 0 1 1 0 0 0 2 1 0 0 0 1 0 2 1 1 0 0 0 0 0 0 10 1 1209.5778 P11021 P11021 377 386 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.0005278 63.624 By MS/MS By MS/MS 2 1 0.99503 0.90843 161.74 3 Median 3.5282 3.6234 198.9 2 1 Median 0.99503 0.90843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42599000 8006900 34593000 35004000 4019500 30985000 7595100 3987400 3607700 0 0 0 0 0 0 0 0 0 0 0 0 6235 1948 6492 31614;31615;31616 31659;31660;31661;31662;31663;31664 31663 6 EFFSQYGDVMDVFIPKPFR FVGRCTEDMTEDELREFFSQYGDVMDVFIP QYGDVMDVFIPKPFRAFAFVTFADDQIAQS R E F F R A 0 1 0 2 0 1 1 1 0 1 0 1 1 4 2 1 0 0 1 2 0 0 19 1 2321.1191 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;K7EN94;A0A0A0N0M3;A0A1W2PNU8;A0A087WV68;A0A087WXQ5;A0A087WXV3;A0A087WX67;A0A087WW61;A0A087WZC9;A0A087WYE7;A0A087WZM1 Q13148 209 227 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 3 4.8048E-05 40.856 By MS/MS 1 0.60331 0.61048 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60331 0.61048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2010500 1256300 754220 0 0 0 0 0 0 2010500 1256300 754220 0 0 0 0 0 0 0 0 0 6236 2789 6493 31617 31665 31665 1 EFFVGLSK ENATLDGGDVLFTGREFFVGLSKRTNQRGA DVLFTGREFFVGLSKRTNQRGAEILADTFK R E F S K R 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 1 0 0 8 0 925.49092 O94760;B4DYP1;O95865;H0Y7N1;A0A140T971;Q5SSV3;Q5SRR8 O94760 137 144 DDAH1;DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1;N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 no no 2 0.0076735 66.073 By MS/MS By matching By matching By matching 1 1 1 1 1.1041 0.99523 3.2911 4 Median 1.0559 0.96815 NaN 1 0 Median 1.1545 0.97289 NaN 1 0 Median 1.055 1.0181 NaN 1 0 Median 1.2206 1.0344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18706000 9125500 9580400 14451000 7146100 7304600 2312400 1026400 1286000 1722900 858190 864660 220060 94873 125190 0 0 0 0 0 0 6237 1722;1801 6494 31618;31619;31620;31621 31666;31667 31667 2 EFFVTSAPWSVIDQQAIHPELNGATYR ITGRIPESLRNCVNKEFFVTSAPWSVIDQQ DQQAIHPELNGATYRYPPGIVGVAPGGLPA K E F Y R Y 3 1 1 1 0 2 2 1 1 2 1 0 0 2 2 2 2 1 1 2 0 0 27 0 3075.509 P56545 P56545 360 386 CTBP2 C-terminal-binding protein 2 yes yes 3 0.038496 10.903 By MS/MS By matching 1 1 0.78898 0.73787 11.803 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68172 0.67879 NaN 1 0 Median 0.91311 0.80209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7030400 4020500 3009900 0 0 0 0 0 0 6939300 3969500 2969800 91082 50935 40147 0 0 0 0 0 0 6238 2514 6495 31622;31623 31668;31669 31668 2 EFGEEALNSLQK GMVDPGEKISATLKREFGEEALNSLQKTSA LKREFGEEALNSLQKTSAEKREIEEKLHKL R E F Q K T 1 0 1 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 12 0 1363.662 Q9BW91;H7C386;D6RAW2 Q9BW91 230 241 NUDT9 ADP-ribose pyrophosphatase, mitochondrial yes no 2 0.0015768 51.276 By MS/MS By matching 1 1 1.4829 1.4429 22.061 2 Median 1.3216 1.2345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.664 1.6865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6315300 2928400 3386800 5981800 2794800 3187000 0 0 0 0 0 0 333500 133620 199880 0 0 0 0 0 0 6239 3866 6496 31624;31625 31670;31671 31671 2 EFGFSGLNVK KNQSETLNWLSNAIKEFGFSGLNVKAFISN SNAIKEFGFSGLNVKAFISNVKTALAATNP K E F V K A 0 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 0 0 0 1 0 0 10 0 1096.5553 Q14008 Q14008 745 754 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.013464 40.002 By MS/MS By matching By matching By matching By MS/MS By matching 1 2 1 1 1 3 1.1904 1.0673 40.059 9 Median 1.1085 1.0667 NaN 1 0 Median 1.1417 1.0186 11.597 2 0 Median 0.85179 0.88398 NaN 1 0 Median 1.1842 1.0673 NaN 1 0 Median 1.6816 1.7715 NaN 1 0 Median 1.2919 1.0783 62.934 3 0 Median 16525000 7063500 9461800 4074500 1860100 2214400 1458800 656310 802450 986970 450260 536710 5057100 2230300 2826900 3042800 1021800 2021000 1905200 844740 1060400 6240 2850 6497 31626;31627;31628;31629;31630;31631;31632;31633;31634 31672;31673;31674 31673 3 EFGLLKPTSAR VPRDQINAEKKLSAKEFGLLKPTSARSGLA LSAKEFGLLKPTSARSGLAESSSKFKPTQS K E F A R S 1 1 0 0 0 0 1 1 0 0 2 1 0 1 1 1 1 0 0 0 0 0 11 1 1217.6768 Q14966 Q14966 1436 1446 ZNF638 Zinc finger protein 638 yes yes 2;3 0.00070142 83.647 By MS/MS By matching By matching 2 1 1 0.98555 0.96489 50.831 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69404 0.83189 9.8405 2 0 Median NaN NaN NaN 0 0 Median 2.1517 2.4083 NaN 1 0 Median 1.3057 1.0439 NaN 1 0 Median 32366000 18769000 13597000 0 0 0 0 0 0 26673000 16349000 10323000 0 0 0 464140 174340 289800 5229100 2245600 2983500 6241 2903 6498 31635;31636;31637;31638 31675;31676;31677 31675 3 EFGLVFQR EGMSDSLLNFLQHLREFGLVFQRKRKSRRY NFLQHLREFGLVFQRKRKSRRYYPTRLAIN R E F Q R K 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 1 0 0 8 0 994.52362 Q92759 Q92759 267 274 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.0055194 75.311 By matching By MS/MS By matching 1 1 1 1.2215 1.0892 24.531 3 Median NaN NaN NaN 0 0 Median 1.2215 1.0892 NaN 1 0 Median 1.0047 1.0053 NaN 1 0 Median 1.8158 1.5912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6345800 3068200 3277600 0 0 0 140460 74887 65578 5939500 2888300 3051200 265840 105060 160780 0 0 0 0 0 0 6242 3553 6499 31639;31640;31641 31678;31679 31679 2 EFGNLTR ______________________________ ______________________________ R E F T R M 0 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 835.41882 O14949 O14949 4 10 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 0.01522 72.138 By MS/MS 1 1.2549 1.224 NaN 1 Median 1.2549 1.224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3545000 1624800 1920200 3545000 1624800 1920200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6243 1505 6500 31642 31680 31680 1 EFGPVVIDYGK IRKARGTFDNAETKKEFGPVVIDYGKVQSK ETKKEFGPVVIDYGKVQSKVNLKYDSWHKE K E F G K V 0 0 0 1 0 0 1 2 0 1 0 1 0 1 1 0 0 0 1 2 0 0 11 0 1222.6234 Q14204 Q14204 1101 1111 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0003569 71.349 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.0258 0.92767 14.883 6 Median 0.82751 0.83094 NaN 1 0 Median 1.2238 1.0706 20.491 2 0 Median 0.873 0.92914 NaN 1 0 Median 1.0873 1.0549 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0009 0.85209 NaN 1 0 Median 108250000 57078000 51177000 46429000 25517000 20912000 10218000 4733500 5484400 48250000 25340000 22909000 3157300 1405200 1752100 0 0 0 200640 82001 118640 6244 2865 6501 31643;31644;31645;31646;31647;31648 31681;31682;31683;31684;31685;31686;31687 31681 7 EFGSLPTTPSEQR QYTNQLAKETDKYIKEFGSLPTTPSEQRQR IKEFGSLPTTPSEQRQRKIQKDRLVAEFTT K E F Q R Q 0 1 0 0 0 1 2 1 0 0 1 0 0 1 2 2 2 0 0 0 0 0 13 0 1447.6943 O15400 O15400 72 84 STX7 Syntaxin-7 yes yes 2 3.8838E-07 114.89 By MS/MS By MS/MS 1 1 0.82424 0.7277 3.1546 2 Median 0.76029 0.71165 NaN 1 0 Median 0.89357 0.74412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22793000 12656000 10137000 17065000 9575200 7489900 5727700 3080500 2647200 0 0 0 0 0 0 0 0 0 0 0 0 6245 1546 6502 31649;31650 31688;31689;31690 31688 3 EFGTNIK IKKIADDKYNDTFWKEFGTNIKLGVIEDHS KYNDTFWKEFGTNIKLGVIEDHSNRTRLAK K E F I K L 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 7 0 807.41267 P14625;Q58FF3 P14625 487 493 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.016156 69.432 By MS/MS By MS/MS 2 1 1.3767 1.2047 59.943 3 Plateau 0.69534 0.69989 72.251 2 0 Median 1.3767 1.2047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29129000 12675000 16454000 5833200 2871800 2961400 23296000 9803300 13493000 0 0 0 0 0 0 0 0 0 0 0 0 6246 2006 6503 31651;31652;31653 31691;31692 31692 2 EFHGNIIK DPPSAKAAIDWFDGKEFHGNIIKVSFATRR IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K E F I K V 0 0 1 0 0 0 1 1 1 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 956.50797 Q92804;A0A075B7D9 Q92804 307 314 TAF15 TATA-binding protein-associated factor 2N yes no 2 0.0075328 81.297 By MS/MS By MS/MS 1 1 1.4217 1.218 3.4243 2 Median NaN NaN NaN 0 0 Median 1.4515 1.2478 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3924 1.1888 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4904100 1982500 2921600 0 0 0 3207500 1340300 1867200 0 0 0 1696600 642230 1054400 0 0 0 0 0 0 6247 3559 6504 31654;31655 31693;31694 31693 2 EFHLNESGDPSSK YFDENPYFENKVLSKEFHLNESGDPSSKST SKEFHLNESGDPSSKSTEIKWKSGKDLTKR K E F S K S 0 0 1 1 0 0 2 1 1 0 1 1 0 1 1 3 0 0 0 0 0 0 13 0 1445.6423 Q01105;A0A0C4DFV9;A0A087X027;P0DME0 Q01105 155 167 SET;SETSIP Protein SET;Protein SETSIP yes no 2;3 5.9218E-07 105.98 By MS/MS By MS/MS By MS/MS By MS/MS 6 7 4 3 0.93916 0.83159 21.768 20 Median 0.77078 0.73172 27.531 6 1 Median 0.97105 0.82663 9.1396 7 2 Median 0.99099 1.0024 24.421 4 0 Median 1.0265 0.86163 5.4975 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 170560000 87320000 83240000 36998000 20207000 16791000 70536000 35107000 35429000 42161000 21144000 21017000 20865000 10862000 10004000 0 0 0 0 0 0 6248 2683 6505 31656;31657;31658;31659;31660;31661;31662;31663;31664;31665;31666;31667;31668;31669;31670;31671;31672;31673;31674;31675 31695;31696;31697;31698;31699;31700;31701;31702;31703;31704;31705;31706;31707;31708;31709;31710;31711;31712;31713;31714;31715;31716;31717;31718;31719;31720;31721;31722;31723;31724;31725 31723 31 EFHTTGLAWSK KAYLSIWTELQAYIKEFHTTGLAWSKTGPV AYIKEFHTTGLAWSKTGPVAKELSGLPSGP K E F S K T 1 0 0 0 0 0 1 1 1 0 1 1 0 1 0 1 2 1 0 0 0 0 11 0 1275.6248 Q01518;Q5T0R1;Q5T0R9;Q5T0S3 Q01518 199 209 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2;3 0.00038183 98.582 By MS/MS By MS/MS By matching 4 2 1 1.1078 1.0241 22.185 7 Median 1.3636 0.99585 12.915 4 2 Linear 1.1499 0.99186 15.255 2 0 Median 1.6534 1.7022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67281000 31868000 35414000 54285000 25874000 28411000 10643000 5187200 5455700 2353600 806760 1546800 0 0 0 0 0 0 0 0 0 6249 2686 6506 31676;31677;31678;31679;31680;31681;31682 31726;31727;31728;31729;31730;31731 31729 6 EFIEAEMK ESGEGQGGYAKEMSKEFIEAEMKLFAQQCK YAKEMSKEFIEAEMKLFAQQCKEVDILIST K E F M K L 1 0 0 0 0 0 3 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 8 0 995.46338 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 295 302 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0035922 86.833 By matching By MS/MS 1 1 1.0671 1 26.891 2 Median 0.83757 0.82687 NaN 1 0 Median 1.3594 1.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17968000 7162100 10806000 2018200 1032700 985510 15950000 6129500 9820100 0 0 0 0 0 0 0 0 0 0 0 0 6250 2814 6507 31683;31684 31732;31733 31733 2 EFIEKYDK IMVSRSEIDLLNIRREFIEKYDKSLHQAIE DLLNIRREFIEKYDKSLHQAIEGDTSGDFL R E F D K S 0 0 0 1 0 0 2 0 0 1 0 2 0 1 0 0 0 0 1 0 0 0 8 1 1070.5284 E5RK69;E5RFF0;H0YC77;P08133;E7EMC6 P08133 640 647 ANXA6 Annexin;Annexin A6 no no 2 0.035906 66.429 By MS/MS By matching 2 1 0.87902 0.852 24.294 3 Median 0.8902 0.88083 4.7063 2 0 Median 0.61035 0.58059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8816200 4593000 4223200 5912100 2901300 3010800 2904100 1691700 1212400 0 0 0 0 0 0 0 0 0 0 0 0 6251 1898;854 6508 31685;31686;31687 31734 31734 1 EFIEMWR TISSSKDEDPLAATREFIEMWRLLGREVPE EDPLAATREFIEMWRLLGREVPEHITEEEL R E F W R L 0 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 7 0 1009.4691 Q7L0Y3;C9JVB6 Q7L0Y3 96 102 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.019913 60.961 By MS/MS By matching By matching By matching 1 1 1 2 1.1593 0.97722 19.416 5 Median 1.1593 1.1532 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2873 1.3537 NaN 1 0 Median 1.2198 0.97722 NaN 1 0 Median 0.83843 0.8703 6.1767 2 0 Median NaN NaN NaN 0 0 Median 8314800 3889800 4425000 3895100 1590600 2304500 0 0 0 1037800 464830 573020 61985 20064 41921 3319900 1814400 1505600 0 0 0 6252 3218 6509 31688;31689;31690;31691;31692 31735;31736 31736 2 EFIHILYFR VQYNINTEELYSYLKEFIHILYFRHLLVNP LYSYLKEFIHILYFRHLLVNPRDRRVVIIE K E F F R H 0 1 0 0 0 0 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 9 0 1236.6655 Q9NZ32;G3V2Q5;G3V5Y4;F6S9Y6;V9GYX7 Q9NZ32 70 78 ACTR10 Actin-related protein 10 yes no 2 0.014496 44.447 By matching By MS/MS By matching 1 1 1 1.1356 1.139 28.115 3 Median NaN NaN NaN 0 0 Median 0.95389 0.82988 NaN 1 0 Median 1.1356 1.139 NaN 1 0 Median 1.6681 1.4539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12131000 5252000 6879500 0 0 0 5516100 2992500 2523500 5481400 1872900 3608500 1134000 386530 747520 0 0 0 0 0 0 6253 4183 6510 31693;31694;31695 31737;31738 31737 2 EFIMFPYDSR YVSEFFKRGFGSGKREFIMFPYDSRLDDKK GSGKREFIMFPYDSRLDDKKFLYSAPRNKS R E F S R L 0 1 0 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 0 10 0 1303.5907 Q9UK61 Q9UK61 572 581 FAM208A Protein FAM208A yes yes 2 0.0070645 48.283 By MS/MS By matching 2 1 0.93057 0.98983 2.6144 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91663 0.96798 3.217 2 0 Median 1.1683 0.98983 NaN 1 0 Median 3150000 1517000 1633000 0 0 0 0 0 0 0 0 0 0 0 0 3064800 1475400 1589400 85137 41570 43567 6254 4307 6511 31696;31697;31698 31739;31740 31739 2 EFIQEPAK FDFLCMPVFHPRFKREFIQEPAKNRPGPQT FHPRFKREFIQEPAKNRPGPQTRSDLLLSG R E F A K N 1 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 8 0 960.49165 O14744;G3V580;G3V5L5;C9JSX3;G3V2L6 O14744 53 60 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0035841 87.323 By MS/MS By MS/MS 1 1 0.94491 0.85186 6.0015 2 Median 0.92442 0.88879 NaN 1 0 Median 0.96585 0.81647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9453100 4439000 5014100 3397100 1632100 1765000 6055900 2806900 3249000 0 0 0 0 0 0 0 0 0 0 0 0 6255 1492 6512 31699;31700 31741;31742;31743;31744 31744 4 EFKDREDLVPYTGEK FKREELLDHLEKQAKEFKDREDLVPYTGEK EFKDREDLVPYTGEKRGKVWVPKQKPLDPV K E F E K R 0 1 0 2 0 0 3 1 0 0 1 2 0 1 1 0 1 0 1 1 0 0 15 2 1824.8894 P28289 P28289 77 91 TMOD1 Tropomodulin-1 yes yes 3 0.00012555 50.155 By MS/MS 1 0.55582 0.62314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55582 0.62314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6776200 4154100 2622100 0 0 0 0 0 0 6776200 4154100 2622100 0 0 0 0 0 0 0 0 0 6256 2164 6513 31701 31745;31746 31745 2 EFKEEGEEIPR GDDEGQKSREAPILKEFKEEGEEIPRVKPE PILKEFKEEGEEIPRVKPEEMMDERPKTRS K E F P R V 0 1 0 0 0 0 5 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 11 1 1361.6463 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 245 255 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2;3 0.0017768 68.735 By MS/MS By matching By MS/MS By matching 2 1 3 1 0.90208 0.92317 23.726 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0166 1.1885 35.953 2 0 Median 1.3652 1.318 NaN 1 0 Median 0.81559 0.92317 10.31 3 1 Median 0.90208 0.78786 NaN 1 0 Median 30904000 16454000 14450000 0 0 0 0 0 0 12900000 7407500 5492600 1020000 410200 609800 15710000 8028200 7681300 1274100 608070 666040 6257 4560 6514 31702;31703;31704;31705;31706;31707;31708 31747;31748;31749;31750;31751 31748 5 EFKEHIAASVSIPSEK SQTRTFIVGAQMNVKEFKEHIAASVSIPSE FKEHIAASVSIPSEKQRLIYQGRVLQDDKK K E F E K Q 2 0 0 0 0 0 3 0 1 2 0 2 0 1 1 3 0 0 0 1 0 0 16 1 1770.9152 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6TC96 P46379 41 56 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3 0.031705 26.365 By MS/MS 1 1.0359 1.0892 NaN 1 Median 1.0359 1.0892 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5775800 3061700 2714100 5775800 3061700 2714100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6258 8 6515 31709 31752 31752 1 EFKEVLKSEETSK ______________________________ KREFKEVLKSEETSKNQIKVDLVDENFTEL R E F S K N 0 0 0 0 0 0 4 0 0 0 1 3 0 1 0 2 1 0 0 1 0 0 13 2 1552.7985 P61086;D6RDM7 P61086 12 24 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 3 0.0023084 37.793 By MS/MS By MS/MS 2 1 0.9982 1.0542 14.126 3 Median 1.1077 1.1476 12.004 2 0 Median 0.96438 0.94371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5828100 2822500 3005500 3087000 1421000 1666100 2741000 1401600 1339500 0 0 0 0 0 0 0 0 0 0 0 0 6259 2543 6516 31710;31711;31712 31753;31754;31755 31755 3 EFKPLPGR ELIHGKKAGLAADKKEFKPLPGRTAASGAA GLAADKKEFKPLPGRTAASGAAGDKDTKDI K E F G R T 0 1 0 0 0 0 1 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 8 1 942.5287 Q14008 Q14008 513 520 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.073807 50.039 By MS/MS By matching 2 2 0.81524 0.86941 13.672 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81524 0.9487 4.887 2 0 Median 0.79863 0.76923 9.8565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7327500 3701200 3626300 0 0 0 0 0 0 3866500 1881400 1985100 3461100 1819800 1641200 0 0 0 0 0 0 6260 2850 6517 31713;31714;31715;31716 31756 31756 1 EFLDVIK SFYADKPEVTQEQKKEFLDVIKCIGIQESE EVTQEQKKEFLDVIKCIGIQESEIIYTDEK K E F I K C 0 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 862.48002 CON__Q3SZR3 CON__Q3SZR3 159 165 yes yes 2 0.050767 52.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1926800 1926800 0 1926800 1926800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 6261 779 6518 31717 31757 31757 1 EFLETVK LKEDIGKALEKAGGKEFLETVKELRKSQGP ALEKAGGKEFLETVKELRKSQGPLEVAEAA K E F V K E 0 0 0 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 864.45928 Q9P0M6;Q5SQT3 Q9P0M6 240 246 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 2 0.040795 44.692 By MS/MS By matching 2 1 0.84477 0.80555 31.142 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7563 0.73887 12.22 2 0 Median 1.4818 1.2406 NaN 1 0 Median 16863000 9109200 7753900 0 0 0 0 0 0 0 0 0 0 0 0 15043000 8246500 6796300 1820300 862710 957610 6262 4206 6519 31718;31719;31720 31758 31758 1 EFLGTYNK MAAQIPESDQIKQFKEFLGTYNKLTETCFL DQIKQFKEFLGTYNKLTETCFLDCVKDFTT K E F N K L 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 970.476 Q9Y5J7;A0A1W2PRH9;A0A1W2PQS5;G3V502;G3V2F3 Q9Y5J7 16 23 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes no 2 0.0084927 62.659 By MS/MS By MS/MS 1 1 1.0381 0.90372 26.881 2 Median 0.81731 0.74728 NaN 1 0 Median 1.3186 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6659300 3125800 3533500 5292200 2495700 2796500 1367100 630110 737000 0 0 0 0 0 0 0 0 0 0 0 0 6263 4459 6520 31721;31722 31759;31760 31759 2 EFLHAQEEVKR VQEEYIKDEQKNLKKEFLHAQEEVKRIQSI NLKKEFLHAQEEVKRIQSIPLVIGQFLEAV K E F K R I 1 1 0 0 0 1 3 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 11 1 1384.7099 P43686 P43686 71 81 PSMC4 26S protease regulatory subunit 6B yes yes 3 3.1697E-05 86.344 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 1.1381 1.1001 32.499 7 Median 1.1381 1.1356 NaN 1 0 Median 1.2059 1.1001 NaN 1 0 Median 1.363 1.3789 NaN 1 0 Median 1.0393 0.99927 NaN 1 0 Median 1.298 1.3468 NaN 1 0 Median 0.71732 0.65244 22.783 2 0 Median 26200000 11720000 14481000 7272000 3358500 3913400 11153000 4989300 6164000 2275700 904100 1371600 2284900 1009700 1275300 1574600 677170 897400 1640000 780880 859080 6264 2327 6521 31723;31724;31725;31726;31727;31728;31729 31761;31762;31763;31764;31765;31766;31767 31765 7 EFLLSLDDSVDETEAVKR EIDLGVPPPVMKTFKEFLLSLDDSVDETEA LSLDDSVDETEAVKRYNDYKLDFRRQQMQD K E F K R Y 1 1 0 3 0 0 3 0 0 0 3 1 0 1 0 2 1 0 0 2 0 0 18 1 2065.0215 Q9BXP5;H7C0U8;A0A286YEP7 Q9BXP5 154 171 SRRT Serrate RNA effector molecule homolog yes no 3 0.0075779 23.1 By matching By MS/MS 1 1 0.86181 0.92103 48.459 2 Median NaN NaN NaN 0 0 Median 1.2948 1.2974 NaN 1 0 Median 0.57361 0.65383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2659400 1316000 1343400 0 0 0 1388900 637090 751850 1270500 678890 591590 0 0 0 0 0 0 0 0 0 6265 3879 6522 31730;31731 31768 31768 1 EFLLSMANR GGFFEDESFAVKHNKEFLLSMANRGKDTNG AVKHNKEFLLSMANRGKDTNGSQFFITTKP K E F N R G 1 1 1 0 0 0 1 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 9 0 1079.5434 C9JN15;C9JM79;Q13427;E9PG73 C9JN15 107 115 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 2 0.011881 61.999 By MS/MS 1 1.1552 1.2364 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1552 1.2364 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2410000 1365200 1044800 0 0 0 0 0 0 2410000 1365200 1044800 0 0 0 0 0 0 0 0 0 6266 709 6523 31732 31769 31769 1 EFLPEGQDIGAFVAEQK KKVGTLWREAGLSWKEFLPEGQDIGAFVAE LPEGQDIGAFVAEQKVEYTLGEESEAPGQR K E F Q K V 2 0 0 1 0 2 3 2 0 1 1 1 0 2 1 0 0 0 0 1 0 0 17 0 1876.9207 E7EX73;E9PGM1;E7EUU4;Q04637;H7C0V6 E7EX73 1242 1258 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 2.3217E-05 72.089 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 0.98127 0.9364 24.084 8 Median 0.97144 0.9364 2.2945 2 0 Median 0.77873 0.68449 19.63 2 0 Median 1.0871 1.2059 7.1469 3 0 Median 1.0216 0.87847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30500000 14904000 15596000 19165000 9234300 9930400 3927300 2096100 1831200 7147000 3476900 3670100 261070 97190 163880 0 0 0 0 0 0 6267 894 6524 31733;31734;31735;31736;31737;31738;31739;31740 31770;31771;31772;31773;31774;31775 31771 6 EFLPQGPVAMR QEGDAAYRKALDLAREFLPQGPVAMRVAKL DLAREFLPQGPVAMRVAKLAINQGMEVDLV R E F M R V 1 1 0 0 0 1 1 1 0 0 1 0 1 1 2 0 0 0 0 1 0 0 11 0 1243.6383 Q13825 Q13825 277 287 AUH Methylglutaconyl-CoA hydratase, mitochondrial yes yes 2 0.00070376 64.265 By MS/MS By MS/MS 1 1 0.7749 0.73828 8.0651 2 Median 0.73587 0.69735 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81599 0.7816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14141000 8312600 5828500 9457000 5449800 4007200 0 0 0 4684000 2862700 1821300 0 0 0 0 0 0 0 0 0 6268 2840 6525 31741;31742 31776;31777;31778 31777 3 EFLQTESPESTELQSR DTYKALVVSVNVSSKEFLQTESPESTELQS FLQTESPESTELQSRLRQLSLLWEAAQGAV K E F S R L 0 1 0 0 0 2 4 0 0 0 2 0 0 1 1 3 2 0 0 0 0 0 16 0 1879.88 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 6619 6634 SYNE2 Nesprin-2 yes no 2 8.1532E-20 134.99 By MS/MS 2 0.68425 0.72798 6.5043 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68425 0.72798 6.5043 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13760000 7888800 5870700 0 0 0 0 0 0 13760000 7888800 5870700 0 0 0 0 0 0 0 0 0 6269 3521 6526 31743;31744 31779;31780 31779 2 EFLSELQR SQPFSLQETYEAKRKEFLSELQRKEEEMRQ TYEAKRKEFLSELQRKEEEMRQMFVNKVKE K E F Q R K 0 1 0 0 0 1 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1020.524 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 329 336 SEPT8 Septin-8 yes no 2 0.0025421 107.43 By MS/MS By MS/MS 2 2 1.0807 0.95184 20.389 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1191 1.1163 28.836 2 0 Median 1.0807 0.9314 9.3604 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47894000 20429000 27465000 0 0 0 0 0 0 40487000 16857000 23630000 7407400 3572300 3835100 0 0 0 0 0 0 6270 118 6527 31745;31746;31747;31748 31781;31782;31783 31782 3 EFLVAGGEDFK EAPATINSASLHPEKEFLVAGGEDFKLYKY HPEKEFLVAGGEDFKLYKYDYNSGEELESY K E F F K L 1 0 0 1 0 0 2 2 0 0 1 1 0 2 0 0 0 0 0 1 0 0 11 0 1210.587 Q9Y3F4;H0YH33 Q9Y3F4 236 246 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.00018232 77.677 By MS/MS By MS/MS By MS/MS 1 2 1 1.1406 1.0324 15.454 4 Median NaN NaN NaN 0 0 Median 1.1026 0.94347 NaN 1 0 Median 1.1939 1.1877 7.0662 2 0 Median 1.0587 0.89664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25262000 11132000 14130000 0 0 0 5268500 2341000 2927500 16778000 7374500 9403100 3215700 1416400 1799300 0 0 0 0 0 0 6271 4429 6528 31749;31750;31751;31752 31784;31785;31786;31787;31788;31789 31784 6 EFMANTESYLK GEPSSLSPEELAFAREFMANTESYLKNVAL AFAREFMANTESYLKNVALKHMPPNLQKVD R E F L K N 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 11 0 1331.6068 Q9BRT9;E5RFF9 Q9BRT9 132 142 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed;DNA replication complex GINS protein SLD5 yes no 2 0.0018712 56.632 By MS/MS By MS/MS 1 1 0.90873 0.80371 21.685 2 Median 1.0077 0.9369 NaN 1 0 Median 0.81944 0.68945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22260000 11096000 11165000 17972000 8624600 9347600 4287900 2470900 1816900 0 0 0 0 0 0 0 0 0 0 0 0 6272 833 6529 31753;31754 31790;31791 31790 2 EFMKDTDSINLYK EEVLVVENDQGEVVREFMKDTDSINLYKNM VREFMKDTDSINLYKNMRETLVYLTHLDYV R E F Y K N 0 0 1 2 0 0 1 0 0 1 1 2 1 1 0 1 1 0 1 0 0 0 13 1 1602.76 O14980 O14980 443 455 XPO1 Exportin-1 yes yes 3 0.025839 33.195 By MS/MS 1 1.2098 1.2668 NaN 1 Median 1.2098 1.2668 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11969000 5061700 6907200 11969000 5061700 6907200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6273 1510 6530 31755 31792 31792 1 EFMLMNAR FIFSKSMNESMKNQKEFMLMNARLQLERQL ESMKNQKEFMLMNARLQLERQLIMQSEMRE K E F A R L 1 1 1 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 8 0 1010.4678 Q9HBL7 Q9HBL7 18 25 PLGRKT Plasminogen receptor (KT) yes yes 2 0.012201 55.441 By MS/MS By MS/MS By matching 2 1 1 1.5633 1.399 33.999 4 Linear 0.93192 0.9209 3.565 2 0 Median 2.0659 1.7513 NaN 1 0 Median 0.82965 0.8405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11050000 4536800 6513500 6245300 3014900 3230300 4163300 1220100 2943200 641790 301730 340060 0 0 0 0 0 0 0 0 0 6274 4020 6531 31756;31757;31758;31759 31793;31794 31794 2 EFMLSFAR IHETIETINQLKTQREFMLSFARDPQGFIN NQLKTQREFMLSFARDPQGFINDWLQSQCR R E F A R D 1 1 0 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 0 0 0 8 0 999.48479 Q96GM5;F8VRQ4;H0YHV1 Q96GM5 439 446 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.0058736 73.616 By MS/MS By matching By matching 1 1 1 0.98377 1.0003 13.578 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96483 1.0003 NaN 1 0 Median 1.4284 1.2595 NaN 1 0 Median 0.98377 0.99116 NaN 1 0 Median NaN NaN NaN 0 0 Median 4838100 2486100 2352000 0 0 0 0 0 0 4219900 2195800 2024100 162940 54360 108580 455280 235990 219290 0 0 0 6275 3659 6532 31760;31761;31762 31795;31796 31796 2 EFNAEVHR PHSTKRFPGYDSESKEFNAEVHRKHIMGQN GYDSESKEFNAEVHRKHIMGQNVADYMRYL K E F H R K 1 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1000.4726 A0A2R8Y6J3;P46777 A0A2R8Y6J3 139 146 RPL5 60S ribosomal protein L5 yes no 2 0.0034702 94.262 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1 1.1868 1.0112 14.017 9 Median 1.1129 1.1553 27.219 2 0 Median 1.1427 0.98697 4.9671 3 0 Median 1.217 1.203 NaN 1 0 Median 1.2915 1.077 NaN 1 0 Median 0.83997 0.90326 NaN 1 1 Median 1.2251 1.0589 NaN 1 0 Median 25496000 11914000 13582000 890410 406520 483890 15705000 7270300 8435100 3728700 1701800 2026900 2054300 1065600 988640 2368800 1131000 1237800 748380 338970 409410 6276 375 6533 31763;31764;31765;31766;31767;31768;31769;31770;31771 31797;31798;31799;31800;31801;31802;31803;31804;31805;31806;31807 31806 11 EFNAEVHRK PHSTKRFPGYDSESKEFNAEVHRKHIMGQN YDSESKEFNAEVHRKHIMGQNVADYMRYLM K E F R K H 1 1 1 0 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 1128.5676 A0A2R8Y6J3;P46777 A0A2R8Y6J3 139 147 RPL5 60S ribosomal protein L5 yes no 2 0.022438 43.246 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.1162 1.1165 6.6352 5 Median 1.0782 1.0631 NaN 1 0 Median 1.1801 1.0844 NaN 1 0 Median 1.1162 1.241 NaN 1 0 Median 1.2711 1.1996 NaN 1 0 Median 1.0408 1.1165 NaN 1 0 Median NaN NaN NaN 0 0 Median 3088600 1469200 1619400 888860 442940 445920 848770 408000 440770 187080 78523 108550 393420 171450 221970 770440 368270 402170 0 0 0 6277 375 6534 31772;31773;31774;31775;31776 31808;31809 31808 2 EFNAFVLDK KGNIAQMYHAPGKKREFNAFVLDKTYFGPY APGKKREFNAFVLDKTYFGPYDETTCIDWT R E F D K T 1 0 1 1 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 1081.5444 Q15269;A0A0B4J2E5 Q15269 130 138 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0053299 57.96 By MS/MS By matching By matching 2 1 1 1.2206 1.2919 11.393 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1029 1.2007 2.0654 2 0 Median 1.6296 1.5164 NaN 1 0 Median 1.3067 1.3698 NaN 1 0 Median NaN NaN NaN 0 0 Median 15521000 6957400 8563400 0 0 0 0 0 0 14206000 6504500 7701300 125840 47377 78462 1189200 405550 783620 0 0 0 6278 223 6535 31777;31778;31779;31780 31810;31811 31810 2 EFNEDGALAVLQQFK VAHSDLDERAIEALKEFNEDGALAVLQQFK EFNEDGALAVLQQFKDSDLSHVQNKSAFLC K E F F K D 2 0 1 1 0 2 2 1 0 0 2 1 0 2 0 0 0 0 0 1 0 0 15 0 1707.8468 O60506;F6UXX1 O60506 67 81 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 2 0.00022155 73.067 By matching By MS/MS By matching By MS/MS By matching By matching 1 1 2 3 1 2 1.2607 1.1652 12.876 10 Median 1.4769 1.4298 NaN 1 0 Median 1.5006 1.2925 NaN 1 0 Median 1.2059 1.1884 21.051 2 0 Median 1.1924 1.0469 3.2266 3 0 Median 1.2526 1.2884 NaN 1 0 Median 1.3585 1.1652 6.5101 2 0 Median 20350000 8688100 11662000 1378100 562260 815870 2799500 1178400 1621100 7270300 3003800 4266500 6471700 2883400 3588300 1607000 654010 952960 823470 406280 417190 6279 1619 6536 31781;31782;31783;31784;31785;31786;31787;31788;31789;31790 31812;31813 31812 2 EFNEEGALSVLQQFK VAYVDLDERAIDALREFNEEGALSVLQQFK EFNEEGALSVLQQFKESDLSHVQNKSAFLC R E F F K E 1 0 1 0 0 2 3 1 0 0 2 1 0 2 0 1 0 0 0 1 0 0 15 0 1737.8574 O43390 O43390 70 84 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.042396 23.987 By matching By MS/MS By MS/MS 1 1 1 1.1354 0.94346 4.9514 3 Median NaN NaN NaN 0 0 Median 1.0738 0.94322 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1852 1.0278 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1354 0.94346 NaN 1 0 Median 6995300 3031300 3964100 0 0 0 3321600 1430000 1891600 0 0 0 2670700 1157100 1513500 0 0 0 1003100 444150 558940 6280 1568 6537 31791;31792;31793 31814;31815 31814 2 EFNKYDTDGSK AVKERYSYVCPDLVKEFNKYDTDGSKWIKQ DLVKEFNKYDTDGSKWIKQYTGINAISKKE K E F S K W 0 0 1 2 0 0 1 1 0 0 0 2 0 1 0 1 1 0 1 0 0 0 11 1 1302.5728 B4DXW1;P61158 B4DXW1 190 200 ACTR3 Actin-related protein 3 yes no 2 0.03287 43.282 By matching By MS/MS By matching 1 2 1 1.1902 1.1707 9.863 4 Median 1.1181 1.0736 NaN 1 0 Median 1.2637 1.1707 10.201 2 0 Median 1.2261 1.3026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6936300 3065800 3870500 4913900 2157800 2756100 1533900 694420 839460 488510 213570 274950 0 0 0 0 0 0 0 0 0 6281 607 6538 31794;31795;31796;31797 31816 31816 1 EFNLNELYQR GRAVSWTFSEENVIREFNLNELYQRAKKLS ENVIREFNLNELYQRAKKLSKAGDNIPEEQ R E F Q R A 0 1 2 0 0 1 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 10 0 1324.6412 Q9Y320 Q9Y320 254 263 TMX2 Thioredoxin-related transmembrane protein 2 yes yes 2 0.00057505 93.551 By MS/MS 1 1.2901 1.0453 NaN 1 Median NaN NaN NaN 0 0 Median 1.2901 1.0453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11241000 4141000 7100300 0 0 0 11241000 4141000 7100300 0 0 0 0 0 0 0 0 0 0 0 0 6282 4404 6539 31798 31817;31818 31818 2 EFNPTKPLLSVNK VAEQVKKSTLNPNAKEFNPTKPLLSVNKST AKEFNPTKPLLSVNKSTSTPTSPGPRTHST K E F N K S 0 0 2 0 0 0 1 0 0 0 2 2 0 1 2 1 1 0 0 1 0 0 13 1 1485.8191 Q8WWM7;H3BUF6 Q8WWM7 665 677 ATXN2L Ataxin-2-like protein yes no 2 0.010365 64.82 By MS/MS 1 1.4434 1.5173 NaN 1 Median 1.4434 1.5173 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6042700 2484300 3558400 6042700 2484300 3558400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6283 3511 6540 31799 31819 31819 1 EFPGFLENQK KGYLTKEDLRVLMEKEFPGFLENQKDPLAV VLMEKEFPGFLENQKDPLAVDKIMKDLDQC K E F Q K D 0 0 1 0 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 0 1207.5873 P60903 P60903 38 47 S100A10 Protein S100-A10 yes yes 2 0.00039551 78.334 By matching By MS/MS 1 2 1.1142 0.98047 46.719 3 Median NaN NaN NaN 0 0 Median 1.1142 0.9273 NaN 1 0 Median 1.4418 1.448 55.146 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13740000 6422900 7317100 0 0 0 2746700 1258400 1488300 10993000 5164500 5828800 0 0 0 0 0 0 0 0 0 6284 2531 6541 31800;31801;31802 31820;31821;31822;31823;31824 31823 5 EFPGFLENQKDPLAVDK KGYLTKEDLRVLMEKEFPGFLENQKDPLAV PGFLENQKDPLAVDKIMKDLDQCRDGKVGF K E F D K I 1 0 1 2 0 1 2 1 0 0 2 2 0 2 2 0 0 0 0 1 0 0 17 1 1945.9785 P60903 P60903 38 54 S100A10 Protein S100-A10 yes yes 2;3 8.7097E-13 114.87 By matching By MS/MS By matching 1 3 1 0.84423 0.85422 7.0756 5 Median NaN NaN NaN 0 0 Median 1.0923 0.94696 NaN 1 0 Median 0.81332 0.81062 3.4943 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0469 0.89808 NaN 1 0 Median 143720000 74841000 68875000 0 0 0 106890 39989 66899 143070000 74539000 68535000 0 0 0 0 0 0 535120 261960 273160 6285 2531 6542 31803;31804;31805;31806;31807 31825;31826;31827;31828;31829;31830;31831;31832;31833;31834;31835;31836;31837;31838;31839 31836 15 EFPGLAGVK HCKTLAPTWEELSKKEFPGLAGVKIAEVDC EELSKKEFPGLAGVKIAEVDCTAERNICSK K E F V K I 1 0 0 0 0 0 1 2 0 0 1 1 0 1 1 0 0 0 0 1 0 0 9 0 916.50182 Q8NBS9 Q8NBS9 367 375 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.012368 46.426 By MS/MS By matching By matching 1 1 1 1.0511 0.89999 8.9901 3 Median 0.96915 0.89999 NaN 1 0 Median 1.0511 0.89681 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.177 1.0497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15789000 7756500 8032800 11154000 5738200 5416200 3466600 1654600 1812000 0 0 0 1168200 363670 804540 0 0 0 0 0 0 6286 3410 6543 31808;31809;31810 31840;31841 31840 2 EFPPGTPR VLEQLIVAHFPMQSREFPPGTPRFNNYVDC HFPMQSREFPPGTPRFNNYVDCMKKFLDAL R E F P R F 0 1 0 0 0 0 1 1 0 0 0 0 0 1 3 0 1 0 0 0 0 0 8 0 899.45012 P78527 P78527 1728 1735 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0066279 92.467 By MS/MS 3 0.55741 0.59968 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55741 0.59968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4993700 3096300 1897400 0 0 0 0 0 0 4993700 3096300 1897400 0 0 0 0 0 0 0 0 0 6287 2647 6544 31811;31812;31813 31842;31843;31844 31844 3 EFPTVPLVK LYSLNAGSLTMSEKREFPTVPLVKLGSSFT TMSEKREFPTVPLVKLGSSFTKVQDYLRRF R E F V K L 0 0 0 0 0 0 1 0 0 0 1 1 0 1 2 0 1 0 0 2 0 0 9 0 1028.5906 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 423 431 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.038513 34.089 By MS/MS By matching 1 2 1.1389 1.0701 21.022 3 Plateau 1.1389 1.0701 NaN 1 0 Median 1.0109 0.87383 24.702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7857700 3829800 4028000 6282000 3157300 3124600 1575700 672440 903310 0 0 0 0 0 0 0 0 0 0 0 0 6288 86 6545 31814;31815;31816 31845;31846 31846 2 EFQAPIGSEEGLR ISNYYDNHLKQQLAKEFQAPIGSEEGLRLL AKEFQAPIGSEEGLRLLEDPERRQVRSGAR K E F L R L 1 1 0 0 0 1 3 2 0 1 1 0 0 1 1 1 0 0 0 0 0 0 13 0 1431.6994 Q9NVH0 Q9NVH0 480 492 EXD2 Exonuclease 3-5 domain-containing protein 2 yes yes 2 0.0021082 66.595 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6289 4129 6546 31817 31847 31847 1 EFQASPLLLPVPTQVPQPVGR SRLVVPELSSRGEPREFQASPLLLPVPTQV LLLPVPTQVPQPVGRVASLLEHHALQLCQQ R E F G R V 1 1 0 0 0 3 1 1 0 0 3 0 0 1 5 1 1 0 0 3 0 0 21 0 2272.258 O60826 O60826 182 202 CCDC22 Coiled-coil domain-containing protein 22 yes yes 3 0.057959 7.8038 By matching By MS/MS 1 1 0.47084 0.473 9.3971 2 Median 0.45202 0.44259 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49043 0.5055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1106600 772600 333970 463290 330910 132370 0 0 0 643280 441690 201590 0 0 0 0 0 0 0 0 0 6290 1632 6547 31818;31819 31848 31848 1 EFQDAPYNEVTGAPAQFEGTEQAPFLGSR PSQFEERKDPHGEKREFQDAPYNEVTGAPA AQFEGTEQAPFLGSRGGAPFQFGGQRRPLL R E F S R G 4 1 1 1 0 3 4 3 0 0 1 0 0 3 3 1 2 0 1 1 0 0 29 0 3155.4472 Q9BTC0 Q9BTC0 1854 1882 DIDO1 Death-inducer obliterator 1 yes yes 3 3.231E-09 45.07 By matching By MS/MS 1 1 0.71652 0.73479 43.593 2 Median 1.049 1.0001 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48943 0.53987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5478700 3391500 2087300 729490 281130 448360 0 0 0 4749300 3110300 1638900 0 0 0 0 0 0 0 0 0 6291 3824 6548 31820;31821 31849;31850 31850 2 EFQLTEENTK CYAESIDDQLNTLLKEFQLTEENTKLRYLT NTLLKEFQLTEENTKLRYLTCSLIEDMAAA K E F T K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1237.5826 Q9NVV4;Q5T852 Q9NVV4 196 205 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 2 0.0042827 53.756 By matching By MS/MS By matching 1 1 1 1.3266 1.1497 7.5983 3 Median NaN NaN NaN 0 0 Median 1.5229 1.309 NaN 1 0 Median 1.1488 1.1497 NaN 1 0 Median 1.3266 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9734100 4235700 5498300 0 0 0 3234700 1252300 1982400 5419600 2476800 2942800 1079800 506630 573190 0 0 0 0 0 0 6292 4141 6549 31822;31823;31824 31851 31851 1 EFQQYLPVVMGPLMK YMISAWARMCKILGKEFQQYLPVVMGPLMK EFQQYLPVVMGPLMKTASIKPEVALLDTQD K E F M K T 0 0 0 0 0 2 1 1 0 0 2 1 2 1 2 0 0 0 1 2 0 0 15 0 1778.9099 O00410;H0Y8C6 O00410 618 632 IPO5 Importin-5 yes no 2 0.0011642 42.336 By MS/MS 1 0.82614 0.81959 NaN 1 Median 0.82614 0.81959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2503200 1368800 1134400 2503200 1368800 1134400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6293 1460 6550 31825 31852;31853 31852 2 EFRPEDQPWLLR LREEARRKKYGIVLKEFRPEDQPWLLRVNG VLKEFRPEDQPWLLRVNGKSGRKFKGIKKG K E F L R V 0 2 0 1 0 1 2 0 0 0 2 0 0 1 2 0 0 1 0 0 0 0 12 1 1584.8049 P35269;M0QXD6;M0R0Z3;M0R0R9 P35269 90 101 GTF2F1 General transcription factor IIF subunit 1 yes no 3 0.0093103 28.764 By MS/MS By matching By matching By matching 1 1 1 1 0.90275 0.85394 19.469 4 Median 0.90553 0.89215 NaN 1 0 Median 0.89997 0.81736 NaN 1 0 Median 1.061 1.184 NaN 1 0 Median 0.81432 0.75875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6152300 3302500 2849800 2804200 1568500 1235700 1568500 731780 836760 1631800 936570 695240 147760 65685 82080 0 0 0 0 0 0 6294 2240 6551 31826;31827;31828;31829 31854 31854 1 EFSDFIR IPGPPGNKDLCFTWREFSDFIRVQLISGPP KDLCFTWREFSDFIRVQLISGPPAKLLLID R E F I R V 0 1 0 1 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 7 0 912.43413 A6NHR9;J3KTL8 A6NHR9 1240 1246 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.014908 73.039 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.1625 1.0905 5.9007 5 Median NaN NaN NaN 0 0 Median 1.1625 1.0254 NaN 1 0 Median 0.99854 1.0905 NaN 1 0 Median 1.2472 1.1013 NaN 1 0 Median 1.039 1.086 NaN 1 0 Median 1.4689 1.2079 NaN 1 0 Median 13467000 6386500 7080900 0 0 0 473550 219840 253720 10430000 4986000 5443700 922070 436050 486010 1360300 607980 752350 281730 136660 145070 6295 518 6552 31830;31831;31832;31833;31834 31855;31856 31856 2 EFSFEAWNAK TQTNGSNVPFKPRGREFSFEAWNAKITDLK KPRGREFSFEAWNAKITDLKQKVENLFNEK R E F A K I 2 0 1 0 0 0 2 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 10 0 1227.556 P78347;A0A494C1K3 P78347 720 729 GTF2I General transcription factor II-I yes no 2 0.00035813 87.181 By matching By matching By MS/MS By matching 1 2 4 4 1.168 1.0288 16.697 11 Median 0.95681 0.96489 NaN 1 0 Median 1.1787 1.0465 11.416 2 0 Median 0.95097 0.96178 29.343 4 0 Median 1.1977 1.032 2.8041 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12299000 6188400 6111000 316050 128830 187220 800320 274550 525770 9757100 5171300 4585800 1425900 613710 812210 0 0 0 0 0 0 6296 2642 6553 31835;31836;31837;31838;31839;31840;31841;31842;31843;31844;31845 31857;31858 31857 2 EFSGHQGQINDMAFSPDGR FSISVLDIETRKIVREFSGHQGQINDMAFS HQGQINDMAFSPDGRWLISAAMDCSIRTWD R E F G R W 1 1 1 2 0 2 1 3 1 1 0 0 1 2 1 2 0 0 0 0 0 0 19 0 2091.9069 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 561 579 WDR36 WD repeat-containing protein 36 yes no 3 1.6202E-08 80.316 By matching By MS/MS By MS/MS 1 3 1 1.1068 1.1206 9.9683 5 Median NaN NaN NaN 0 0 Median 1.1068 0.93551 NaN 1 0 Median 1.0271 1.1206 5.8465 3 0 Median 1.3501 1.1632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25180000 11575000 13605000 0 0 0 2180200 889230 1291000 21284000 10023000 11262000 1715000 663180 1051800 0 0 0 0 0 0 6297 188 6554 31846;31847;31848;31849;31850 31859;31860;31861 31859 3 EFSGNPIK DPPSAKAAIDWFDGKEFSGNPIKVSFATRR IDWFDGKEFSGNPIKVSFATRRADFNRGGG K E F I K V 0 0 1 0 0 0 1 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 890.44978 H3BPE7;P35637 H3BPE7 359 366 FUS RNA-binding protein FUS yes no 2 0.028842 40.103 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0842 0.94883 8.7221 5 Median 0.98083 0.94883 NaN 1 0 Median 1.0842 0.92511 NaN 1 0 Median 0.82469 0.82451 NaN 1 0 Median 1.1682 0.99411 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.235 1.038 NaN 1 0 Median 31929000 16242000 15687000 1702900 841120 861810 4168800 1899200 2269600 21477000 11629000 9847700 3780700 1582200 2198400 0 0 0 799650 289860 509790 6298 1221 6555 31851;31852;31853;31854;31855 31862;31863;31864;31865 31865 4 EFSGYPGLLNGVR GSIRIYDKERLNVLREFSGYPGLLNGVRFA LREFSGYPGLLNGVRFANSCDSVYSACTDG R E F V R F 0 1 1 0 0 0 1 3 0 0 2 0 0 1 1 1 0 0 1 1 0 0 13 0 1407.7147 G3V4B8;Q96FK6 G3V4B8 65 77 WDR89 WD repeat-containing protein 89 yes no 2 0.060251 38.303 By MS/MS 1 0.99401 1.0796 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99401 1.0796 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2016900 911570 1105300 0 0 0 0 0 0 2016900 911570 1105300 0 0 0 0 0 0 0 0 0 6299 1114 6556 31856 31866 31866 1 EFSGYVESGLK YSRMANRDLLSSVSREFSGYVESGLKTILQ SVSREFSGYVESGLKTILQCALNRPAFFAE R E F L K T 0 0 0 0 0 0 2 2 0 0 1 1 0 1 0 2 0 0 1 1 0 0 11 0 1214.5819 P20073 P20073 398 408 ANXA7 Annexin A7 yes yes 2 0.00016475 91.867 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.2224 1.0935 34.734 6 Median 1.0406 0.96017 NaN 1 0 Median 1.3504 1.1458 NaN 1 0 Median 1.2827 1.2432 NaN 1 0 Median 1.1649 1.0437 NaN 1 0 Median 0.9103 0.86778 NaN 1 1 Median 2.4046 2.3047 NaN 1 0 Median 58542000 28352000 30190000 23382000 12044000 11338000 8359400 3950500 4408800 10472000 3940500 6531800 5067800 2312200 2755700 7771400 5135700 2635700 3488800 969770 2519100 6300 2073 6557 31857;31858;31859;31860;31861;31862 31867;31868;31869;31870;31871;31872 31872 6 EFSHIAFLTIK VKYGDSGEQIAGFVKEFSHIAFLTIKGAGH GFVKEFSHIAFLTIKGAGHMVPTDKPLAAF K E F I K G 1 0 0 0 0 0 1 0 1 2 1 1 0 2 0 1 1 0 0 0 0 0 11 0 1304.7129 X6R8A1;X6R5C5;P10619 X6R8A1 461 471 CTSA Carboxypeptidase;Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 2 0.033742 30.167 By MS/MS By matching By matching 1 1 1 1.5754 1.3766 40.565 3 Median 1.2264 1.1594 NaN 1 0 Median 1.5754 1.3766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0036 2.5104 NaN 1 0 Median 5968100 2350900 3617200 4690500 1911200 2779300 624430 238830 385610 0 0 0 0 0 0 0 0 0 653230 200890 452340 6301 1944 6558 31863;31864;31865 31873 31873 1 EFSIDVGYER KWIKQYTGINAISKKEFSIDVGYERFLGPE AISKKEFSIDVGYERFLGPEIFFHPEFANP K E F E R F 0 1 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 10 0 1213.5615 B4DXW1;P61158 B4DXW1 215 224 ACTR3 Actin-related protein 3 yes no 2 0.000715 105.52 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.4842 1.2871 18.136 4 Median 1.7483 1.7281 NaN 1 0 Median 1.5892 1.3863 NaN 1 0 Median 1.1866 1.1634 NaN 1 0 Median 1.3862 1.195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32782000 13615000 19167000 4289000 1602000 2687000 814730 307570 507160 19167000 8322200 10844000 8511500 3382700 5128900 0 0 0 0 0 0 6302 607 6559 31866;31867;31868;31869 31874;31875;31876;31877 31875 4 EFSITDLVPYSITLR CALQCAILSPAFKVREFSITDLVPYSITLR EFSITDLVPYSITLRWKTSFEDGSGECEVF R E F L R W 0 1 0 1 0 0 1 0 0 2 2 0 0 1 1 2 2 0 1 1 0 0 15 0 1752.9298 O95757;E9PDE8;D6RJ96 O95757 391 405 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.010277 30.331 By MS/MS 1 1.1519 1.0397 NaN 1 Median NaN NaN NaN 0 0 Median 1.1519 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 969800 430690 539120 0 0 0 969800 430690 539120 0 0 0 0 0 0 0 0 0 0 0 0 6303 1790 6560 31870 31878 31878 1 EFSITDVVPYPISLR CALQCAILSPAFKVREFSITDVVPYPISLR EFSITDVVPYPISLRWNSPAEEGSSDCEVF R E F L R W 0 1 0 1 0 0 1 0 0 2 1 0 0 1 2 2 1 0 1 2 0 0 15 0 1734.9192 P34932;A0A087WYC1;A0A087WTS8 P34932 391 405 HSPA4 Heat shock 70 kDa protein 4 yes no 2 8.685E-08 146.16 By MS/MS By MS/MS 3 5 0.89089 0.81255 7.9652 8 Median 0.87135 0.85136 3.0539 3 1 Median 0.91087 0.77312 6.6033 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33942000 17638000 16303000 20555000 10771000 9784200 13386000 6867200 6519100 0 0 0 0 0 0 0 0 0 0 0 0 6304 2230 6561 31871;31872;31873;31874;31875;31876;31877;31878 31879;31880;31881;31882;31883;31884;31885;31886;31887 31881 8 EFSIYMTK CFTGLKPEQVERLIKEFSIYMTKDGRISVA QVERLIKEFSIYMTKDGRISVAGVTSSNVG K E F T K D 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1 1 0 1 0 0 0 8 0 1017.4841 P00505 P00505 397 404 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0093593 60.972 By MS/MS By MS/MS By MS/MS 2 1 1 1.1886 1.1782 9.0822 4 Median 1.1595 1.0779 4.9039 2 0 Median 1.4675 1.2588 NaN 1 0 Median 1.1912 1.2439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66057000 30620000 35437000 54662000 25690000 28972000 4083000 1625300 2457800 7311600 3304500 4007100 0 0 0 0 0 0 0 0 0 6305 1823 6562 31879;31880;31881;31882 31888;31889;31890;31891 31890 4 EFSPFGSITSAK IKNLDDTIDDEKLRKEFSPFGSITSAKVML LRKEFSPFGSITSAKVMLEDGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 3 1 0 0 0 0 0 12 0 1269.6241 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 313 324 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.00062624 65.5 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 2 1 1 1.1594 1.023 25.933 10 Median 1.0741 0.99267 5.5155 2 0 Median 1.1446 1.0004 15.554 3 0 Median 2.0877 2.1087 NaN 1 0 Median 1.1832 1.023 0.33004 2 0 Median 1.359 1.4053 NaN 1 0 Median 1.0884 0.92758 NaN 1 0 Median 64120000 28410000 35709000 31459000 15389000 16070000 13824000 6365800 7458200 12256000 4045800 8210200 1521400 694360 827070 4586600 1714100 2872600 473160 201680 271480 6306 576;1151 6563 31883;31884;31885;31886;31887;31888;31889;31890;31891;31892 31892;31893;31894;31895;31896;31897;31898 31892 7 EFSPFGTITSAK VKNLDDGIDDERLRKEFSPFGTITSAKVMM LRKEFSPFGTITSAKVMMEGGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 2 2 0 0 0 0 0 12 0 1283.6398 P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YAP2;H0YB86 P11940 313 324 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2 0.00060457 83.862 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1.038 1.0143 16.23 6 Median 0.97988 0.91973 NaN 1 0 Median 0.89303 0.75348 NaN 1 0 Median 1.0251 1.0308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.051 1.0788 NaN 1 1 Median 1.3179 1.1022 14.041 2 0 Median 42902000 20153000 22749000 11811000 5253800 6557100 6643200 3345700 3297500 15671000 7623200 8048300 0 0 0 7417500 3328700 4088800 1358600 601710 756870 6307 1973 6564 31893;31894;31895;31896;31897;31898;31899 31899;31900;31901;31902;31903 31900 5 EFSTNNPFK IAVSKMMMVLGAKWREFSTNNPFKGSSGAS LGAKWREFSTNNPFKGSSGASVAAAAAAAV R E F F K G 0 0 2 0 0 0 1 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 9 0 1082.5033 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839 211 219 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0068944 53.166 By matching By MS/MS By matching 1 2 1 0.85961 0.87329 8.207 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79771 0.8799 NaN 1 0 Median 0.9796 0.90995 6.8814 2 0 Median 0.81432 0.78219 NaN 1 0 Median NaN NaN NaN 0 0 Median 19687000 10809000 8877600 0 0 0 0 0 0 13450000 7526900 5922900 4671700 2289200 2382500 1565500 993270 572200 0 0 0 6308 246 6565 31900;31901;31902;31903 31904;31905 31905 2 EFTAQNLGK LLIAGQINTYCQNIKEFTAQNLGKLFMAQA YCQNIKEFTAQNLGKLFMAQALQEYNN___ K E F G K L 1 0 1 0 0 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1006.5084 B3KS98;O15372;A0A087WZK9 B3KS98 346 354 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.0025334 71.342 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1461 1.0346 24.503 4 Median 1.1642 1.0866 NaN 1 0 Median 1.1283 0.96175 NaN 1 0 Median 0.90629 0.98513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.069 1.6294 NaN 1 0 Median 17088000 7614700 9473700 4704200 1965200 2739000 9314900 4225300 5089600 2896500 1377200 1519300 0 0 0 0 0 0 172820 47004 125820 6309 584 6566 31904;31905;31906;31907 31906;31907;31908;31909;31910 31910 5 EFTEAVEAK LILDDVSLTHLTFGKEFTEAVEAKQVAQQE HLTFGKEFTEAVEAKQVAQQEAERARFVVE K E F A K Q 2 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1022.492 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2 P35232 178 186 PHB Prohibitin yes no 2 0.001354 89.355 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1.2606 1.0514 20.564 5 Median 0.95288 0.86571 NaN 1 0 Median 1.3798 1.1546 13.254 2 1 Median 1.0063 0.94491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7177 1.4241 NaN 1 0 Median 65299000 27875000 37424000 19824000 10174000 9649600 33131000 12343000 20788000 8581500 3954100 4627500 0 0 0 0 0 0 3762900 1403600 2359300 6310 2233 6567 31908;31909;31910;31911;31912;31913 31911;31912;31913;31914;31915;31916;31917 31915 7 EFTEREQGEVR SSEDTLLKDAAKVCREFTEREQGEVRFSAV KVCREFTEREQGEVRFSAVALCKAA_____ R E F V R F 0 2 0 0 0 1 4 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 11 1 1378.6477 P09936;D6RE83 P09936 203 213 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 3.7824E-05 120.96 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.079 1.0233 10.639 6 Median 1.0806 1.1551 11.236 2 0 Median 1.1565 0.98221 3.2566 2 0 Median 1.0049 1.0419 NaN 1 0 Median 1.0301 0.92237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89426000 41048000 48377000 53292000 24713000 28579000 34675000 15680000 18995000 869910 384000 485910 589040 271360 317690 0 0 0 0 0 0 6311 1923 6568 31914;31915;31916;31917;31918;31919 31918;31919;31920;31921;31922;31923;31924;31925 31922 8 EFTKLEEVLTNK QNKEDYAGLKEEFRKEFTKLEEVLTNKKTT FRKEFTKLEEVLTNKKTTFFGGNSISMIDY K E F N K K 0 0 1 0 0 0 3 0 0 0 2 2 0 1 0 0 2 0 0 1 0 0 12 1 1449.7715 P78417;Q5TA02 P78417 149 160 GSTO1 Glutathione S-transferase omega-1 yes no 2;3 0.0029473 66.19 By MS/MS By MS/MS 2 2 1.1637 1.1379 10.011 4 Median 1.1194 1.1379 0.60785 2 0 Median 1.3437 1.2313 15.429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27092000 10859000 16233000 24290000 9660900 14630000 2801700 1198000 1603700 0 0 0 0 0 0 0 0 0 0 0 0 6312 2646 6569 31920;31921;31922;31923 31926;31927 31926 2 EFTKLEEVLTNKK QNKEDYAGLKEEFRKEFTKLEEVLTNKKTT RKEFTKLEEVLTNKKTTFFGGNSISMIDYL K E F K K T 0 0 1 0 0 0 3 0 0 0 2 3 0 1 0 0 2 0 0 1 0 0 13 2 1577.8665 P78417;Q5TA02 P78417 149 161 GSTO1 Glutathione S-transferase omega-1 yes no 3;4 0.00034416 60.157 By MS/MS By MS/MS By matching 2 1 1 1.1616 1.2268 18.674 3 Median 1.1616 1.2268 NaN 1 0 Median 1.4673 1.4358 NaN 1 0 Median 0.87719 0.98976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154140000 68212000 85928000 139460000 62355000 77105000 10123000 4249500 5873500 4556500 1606800 2949700 0 0 0 0 0 0 0 0 0 6313 2646 6570 31924;31925;31926;31927 31928;31929;31930;31931;31932 31928 5 EFTLEFSR RANACNSVIKQLMKKEFTLEFSRDRKSMSV IKQLMKKEFTLEFSRDRKSMSVYCTPNKPS K E F S R D 0 1 0 0 0 0 2 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 8 0 1027.4975 P16615;H7C5W9;O14983;Q93084 P16615 482 489 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 0.008272 63.565 By MS/MS By matching 3 3 1.2885 1.1627 7.8242 6 Median 1.1877 1.1817 11.779 3 0 Median 1.3644 1.1565 1.8181 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26843000 11747000 15096000 13528000 5893300 7634400 13316000 5854000 7461800 0 0 0 0 0 0 0 0 0 0 0 0 6314 2031 6571 31928;31929;31930;31931;31932;31933 31933;31934;31935 31933 3 EFTNQEAAEPK VPQELETSTGHSLEKEFTNQEAAEPKEVPA SLEKEFTNQEAAEPKEVPAHSTEVGRDHNE K E F P K E 2 0 1 0 0 1 3 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 11 0 1262.5779 Q32MZ4 Q32MZ4 475 485 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes yes 2 0.0024672 53.327 By matching By MS/MS 1 1 0.93334 0.87434 37.293 2 Median 1.1214 1.1382 NaN 1 0 Median 0.77681 0.67167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4291600 2312100 1979500 803360 468990 334370 3488300 1843100 1645200 0 0 0 0 0 0 0 0 0 0 0 0 6315 3006 6572 31934;31935 31936 31936 1 EFTPYDYSQSDFK LKISKKPKDPEPPEKEFTPYDYSQSDFKAF EKEFTPYDYSQSDFKAFAGNSKSKVSSQFD K E F F K A 0 0 0 2 0 1 1 0 0 0 0 1 0 2 1 2 1 0 2 0 0 0 13 0 1625.6886 Q01780 Q01780 814 826 EXOSC10 Exosome component 10 yes yes 2 0.0058217 57.347 By MS/MS 2 0.8006 0.88084 4.0561 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8006 0.88084 4.0561 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7502900 3922800 3580100 0 0 0 0 0 0 7502900 3922800 3580100 0 0 0 0 0 0 0 0 0 6316 2691 6573 31936;31937 31937;31938 31937 2 EFTQGVKPDWTIAR VETKQLLSASYEFQREFTQGVKPDWTIARI REFTQGVKPDWTIARIEHSKLLE_______ R E F A R I 1 1 0 1 0 1 1 1 0 1 0 1 0 1 1 0 2 1 0 1 0 0 14 1 1646.8417 Q8WWC4 Q8WWC4 270 283 C2orf47 Uncharacterized protein C2orf47, mitochondrial yes yes 3 0.00028642 56.482 By MS/MS By matching By matching 1 1 1 0.8916 0.92907 15.931 3 Median 0.8916 0.92907 NaN 1 0 Median 1.1445 1.0685 NaN 1 0 Median 0.75495 0.77754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29730000 15456000 14275000 24890000 12874000 12016000 2186200 1107400 1078800 2653700 1473700 1180000 0 0 0 0 0 0 0 0 0 6317 3507 6574 31938;31939;31940 31939 31939 1 EFVAQNNTVQIK EKRKVAALEIEKLVREFVAQNNTVQIKHVI LVREFVAQNNTVQIKHVIQTLSQEFALSQH R E F I K H 1 0 2 0 0 2 1 0 0 1 0 1 0 1 0 0 1 0 0 2 0 0 12 0 1389.7252 Q08AM6;H3BUU8 Q08AM6 39 50 VAC14 Protein VAC14 homolog yes no 2 0.00059322 72.325 By MS/MS By matching 1 1 0.95454 0.88 12.014 2 Median 0.84125 0.80833 NaN 1 0 Median 1.0831 0.95802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5610300 3107500 2502800 3555400 1841600 1713900 2054900 1266000 788900 0 0 0 0 0 0 0 0 0 0 0 0 6318 2744 6575 31941;31942 31940;31941 31940 2 EFVEAVLELR LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K E F L R K 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1203.6499 O75367;B4DJC3 O75367 240 249 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.013194 40.352 By MS/MS By MS/MS 2 3 1.3244 1.0871 9.5693 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95609 0.99101 14.81 2 0 Median 1.3455 1.0871 3.1112 3 0 Median 16754000 7367400 9386600 0 0 0 0 0 0 0 0 0 0 0 0 4841600 2469700 2371900 11912000 4897700 7014700 6319 1662 6576 31943;31944;31945;31946;31947 31942;31943;31944;31945 31945 4 EFVGQIMTMLNK LISNEILPYANFIPKEFVGQIMTMLNKGSI IPKEFVGQIMTMLNKGSIHSQSSSFTEAEI K E F N K G 0 0 1 0 0 1 1 1 0 1 1 1 2 1 0 0 1 0 0 1 0 0 12 0 1409.7047 A0A286YFF8;Q7Z3U7 A0A286YFF8 1545 1556 MON2 Protein MON2 homolog yes no 2 0.0026723 48.091 By MS/MS By MS/MS By matching 1 1 1 1.0697 1.0194 166.82 3 Median 1.0596 1.0194 NaN 1 0 Median 1.0697 0.94788 NaN 1 0 Median NaN NaN NaN 0 0 Median 20.771 17.665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16352000 6542100 9809700 3264000 1625900 1638000 9889800 4725000 5164800 0 0 0 3198000 191170 3006800 0 0 0 0 0 0 6320 353 6577 31948;31949;31950 31946;31947 31946 2 EFVISDRK TDKTLVKEVVQNFAKEFVISDRKELEEDFI VVQNFAKEFVISDRKELEEDFIKSELKKAG K E F R K E 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 1 992.5291 Q14019;H3BT58 Q14019 111 118 COTL1 Coactosin-like protein yes no 2 0.011185 65.252 By MS/MS By MS/MS By MS/MS 2 1 1 1.1596 1.1436 19.058 4 Median 1.1596 1.1436 1.7703 2 0 Median 1.0476 0.92493 NaN 1 0 Median 1.4091 1.4729 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14600000 6684300 7915500 4596300 2059400 2536900 8344700 4017500 4327200 1658900 607410 1051500 0 0 0 0 0 0 0 0 0 6321 2853 6578 31951;31952;31953;31954 31948;31949;31950;31951 31951 4 EFVTAFK KFAMEPEEFDSDTLREFVTAFKKGKLKPVI EFDSDTLREFVTAFKKGKLKPVIKSQPVPK R E F F K K 1 0 0 0 0 0 1 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 7 0 840.43815 P13667;A0A499FI48 P13667 500 506 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.047302 52.683 By MS/MS By MS/MS By matching 1 1 1 1.3717 1.1924 6.1824 3 Median NaN NaN NaN 0 0 Median 1.412 1.2352 NaN 1 0 Median 1.0371 1.0952 NaN 1 1 Median 1.3717 1.1924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9948600 4457200 5491400 0 0 0 4265200 1696300 2568900 4969300 2494300 2475000 714030 266590 447440 0 0 0 0 0 0 6322 1993 6579 31955;31956;31957 31952;31953 31953 2 EFVTAFKK KFAMEPEEFDSDTLREFVTAFKKGKLKPVI FDSDTLREFVTAFKKGKLKPVIKSQPVPKN R E F K K G 1 0 0 0 0 0 1 0 0 0 0 2 0 2 0 0 1 0 0 1 0 0 8 1 968.53312 P13667;A0A499FI48 P13667 500 507 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.017993 54.549 By MS/MS 1 0.99616 1.0281 NaN 1 Median 0.99616 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3622200 1919400 1702800 3622200 1919400 1702800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6323 1993 6580 31958 31954;31955 31954 2 EFWAKPKP VVGAMTVGMGYSMYREFWAKPKP_______ MGYSMYREFWAKPKP_______________ R E F K P - 1 0 0 0 0 0 1 0 0 0 0 2 0 1 2 0 0 1 0 0 0 0 8 2 1001.5335 Q9Y241 Q9Y241 86 93 HIGD1A HIG1 domain family member 1A, mitochondrial yes yes 2 0.0095578 107.43 By matching By MS/MS 1 1 1.0384 0.93562 11.336 2 Median 1.0825 1.0137 NaN 1 0 Median 0.99614 0.86355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14963000 7323600 7639200 4634800 2288900 2345900 10328000 5034700 5293300 0 0 0 0 0 0 0 0 0 0 0 0 6324 4371 6581 31959;31960 31956 31956 1 EGAAHAFAQYNLDQFTPVK FNDVRLLLNNDNLLREGAAHAFAQYNLDQF HAFAQYNLDQFTPVKIEGYEDQVLITEHGD R E G V K I 4 0 1 1 0 2 1 1 1 0 1 1 0 2 1 0 1 0 1 1 0 0 19 0 2106.0171 P47755;C9JUG7;F8W9N7;A0A0D9SET8 P47755 48 66 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 3.0372E-08 70.335 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.1126 1.0489 14.348 5 Median 1.1126 1.0548 NaN 1 0 Median 1.0795 0.90971 NaN 1 0 Median 0.88598 0.85215 NaN 1 0 Median 1.3197 1.1364 11.332 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16687000 8371900 8314700 5719500 2994200 2725300 1952400 948510 1003900 8321200 4119400 4201700 693530 309760 383770 0 0 0 0 0 0 6325 2354 6582 31961;31962;31963;31964;31965 31957;31958;31959;31960 31958 4 EGAAHAFAQYNMDQFTPVK FNDVRLLLNNDNLLREGAAHAFAQYNMDQF HAFAQYNMDQFTPVKIEGYEDQVLITEHGD R E G V K I 4 0 1 1 0 2 1 1 1 0 0 1 1 2 1 0 1 0 1 1 0 0 19 0 2123.9735 P52907 P52907 48 66 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 6.5082E-19 118.24 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 1 1 1 0.98312 0.91383 19.202 7 Median 0.98312 0.91383 23.264 3 2 Median 1.1132 0.93617 NaN 1 0 Median 0.81272 0.78275 NaN 1 0 Median 1.1102 0.94576 NaN 1 0 Median 0.63322 0.62556 NaN 1 0 Median NaN NaN NaN 0 0 Median 48357000 24855000 23502000 19832000 9944500 9887700 8426900 3617700 4809200 18329000 10424000 7905500 973080 439420 533650 795430 429780 365650 0 0 0 6326 2461 6583 31966;31967;31968;31969;31970;31971;31972 31961;31962;31963;31964;31965 31964 5 EGAAVIDVGINR SAAGIPNLITADMIKEGAAVIDVGINRVHD MIKEGAAVIDVGINRVHDPVTAKPKLVGDV K E G N R V 2 1 1 1 0 0 1 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0 12 0 1212.6463 P13995;B9A062 P13995 267 278 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 2.0784E-10 111.61 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.4516 1.3983 10.349 4 Linear 1.3863 1.2961 NaN 1 1 Median 1.3555 1.129 NaN 1 1 Median 1.3929 1.3546 NaN 1 0 Median 1.2335 1.0954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36950000 15400000 21551000 10011000 3990800 6020200 5544800 2399500 3145400 20253000 8463600 11790000 1141000 545770 595240 0 0 0 0 0 0 6327 2000 6584 31973;31974;31975;31976;31977;31978 31966;31967;31968;31969;31970;31971 31971 6 EGADEEEWVVAK TTEGPFNQGYGEGAKEGADEEEWVVAKDKP GAKEGADEEEWVVAKDKPVYDELFYTLSPI K E G A K D 2 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 1 0 2 0 0 12 0 1360.6147 Q9H223 Q9H223 435 446 EHD4 EH domain-containing protein 4 yes yes 2 0.012077 36.334 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.83131 0.71989 17.811 4 Median NaN NaN NaN 0 0 Median 0.88033 0.76082 NaN 1 0 Median 0.68175 0.68116 NaN 1 0 Median 0.78502 0.67053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.172 0.98579 NaN 1 0 Median 10548000 6031700 4516700 0 0 0 1813100 954630 858520 5639100 3527200 2111800 1635600 849400 786170 0 0 0 1460600 700430 760200 6328 3939 6585 31979;31980;31981;31982 31972;31973 31972 2 EGAEEIDR QQIKTRPRKIKKDGKEGAEEIDRHVERRRS KIKKDGKEGAEEIDRHVERRRSRSPRRSLS K E G D R H 1 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8 0 917.40904 Q5VTL8;A0A0A0MRN0 Q5VTL8 246 253 PRPF38B Pre-mRNA-splicing factor 38B yes no 2 0.030362 38.962 By MS/MS 1 1.003 1.0725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.003 1.0725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2367100 1085200 1281900 0 0 0 0 0 0 2367100 1085200 1281900 0 0 0 0 0 0 0 0 0 6329 3111 6586 31983 31974 31974 1 EGAFSNFPISEETIK ESNSEIEQEIPVEQKEGAFSNFPISEETIK EGAFSNFPISEETIKLLKGRGVTFLFPIQA K E G I K L 1 0 1 0 0 0 3 1 0 2 0 1 0 2 1 2 1 0 0 0 0 0 15 0 1667.8043 Q9NR30;Q9BQ39;A0A087WVC1 Q9NR30 185 199 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 9.129E-07 96.103 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 3 2 1 3 1.1296 1.0417 26.539 12 Median 1.5722 1.5228 NaN 1 0 Median 0.98785 0.87425 17.872 2 0 Median 1.0797 1.1562 31.971 3 0 Median 1.2966 1.1393 16.151 2 0 Median 1.1333 1.1491 NaN 1 0 Median 1.1259 0.9512 20.132 3 0 Median 128660000 58664000 69998000 9975300 3954600 6020800 3391400 1587300 1804100 81447000 37682000 43766000 701510 276420 425090 31755000 14484000 17271000 1391000 680430 710600 6330 4076;3781 6587 31984;31985;31986;31987;31988;31989;31990;31991;31992;31993;31994;31995 31975;31976;31977;31978;31979;31980;31981;31982;31983;31984;31985 31980 11 EGAITFTWVER QQPGTFLLRFSESSREGAITFTWVERSQNG ESSREGAITFTWVERSQNGGEPDFHAVEPY R E G E R S 1 1 0 0 0 0 2 1 0 1 0 0 0 1 0 0 2 1 0 1 0 0 11 0 1307.651 P42224;J3KPM9 P42224 609 619 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.0059412 45.161 By MS/MS 1 1.0766 0.94219 NaN 1 Median NaN NaN NaN 0 0 Median 1.0766 0.94219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1674300 745170 929120 0 0 0 1674300 745170 929120 0 0 0 0 0 0 0 0 0 0 0 0 6331 2308 6588 31996 31986 31986 1 EGALCEENMR EIKDSVVAGFQWATKEGALCEENMRGVRFD QWATKEGALCEENMRGVRFDVHDVTLHADA K E G M R G 1 1 1 0 1 0 3 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1207.4962 P13639 P13639 689 698 EEF2 Elongation factor 2 yes yes 2 1.3843E-30 206.78 By MS/MS 5 0.99558 0.86855 15.242 5 Median NaN NaN NaN 0 0 Median 0.99558 0.86855 15.242 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22515000 11443000 11072000 0 0 0 22515000 11443000 11072000 0 0 0 0 0 0 0 0 0 0 0 0 6332 1992 6589;6590 31997;31998;31999;32000;32001 31987;31988;31989 31989 772 3 EGALTAFR AMMAKAEYLCRIGDKEGALTAFRKTYDKTV LCRIGDKEGALTAFRKTYDKTVALGHRLDI K E G F R K 2 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 863.45012 Q15008;C9J0E9 Q15008 118 125 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.043248 54.611 By MS/MS 1 1.3493 1.1675 NaN 1 Median NaN NaN NaN 0 0 Median 1.3493 1.1675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3540400 1476900 2063500 0 0 0 3540400 1476900 2063500 0 0 0 0 0 0 0 0 0 0 0 0 6333 2911 6591 32002 31990 31990 1 EGAQYLMQAAGLGR KMKAFYAPVHADDLREGAQYLMQAAGLGRM REGAQYLMQAAGLGRMKPNTLVLGFKKDWL R E G G R M 3 1 0 0 0 2 1 3 0 0 2 0 1 0 0 0 0 0 1 0 0 0 14 0 1463.7191 P55011;G3XAL9 P55011 865 878 SLC12A2 Solute carrier family 12 member 2 yes no 2 0.0071975 51.927 By MS/MS 1 1.0461 1.0125 NaN 1 Median 1.0461 1.0125 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3917700 1441600 2476200 3917700 1441600 2476200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6334 2490 6592 32003 31991 31991 1 EGATVYATGTHAQVEDGR PRVIRCMTNTPVVVREGATVYATGTHAQVE TVYATGTHAQVEDGRLMEQLLSSVGFCTEV R E G G R L 3 1 0 1 0 1 2 3 1 0 0 0 0 0 0 0 3 0 1 2 0 0 18 0 1860.8602 P32322;E2QRB3;J3KQ22;J3QKT4;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32 P32322 130 147 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 2;3 2.4565E-08 91.065 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.7534 1.4719 28.126 6 Median 0.91791 0.87587 NaN 1 0 Median 1.7534 1.4719 5.0368 2 0 Median 1.2636 1.2347 NaN 1 0 Median 2.0198 1.685 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3064 1.9741 NaN 1 1 Median 35881000 13983000 21898000 3845900 1945800 1900100 12355000 4279000 8076500 9419900 4466500 4953400 9222600 3055100 6167500 0 0 0 1036900 236180 800720 6335 2218 6593 32004;32005;32006;32007;32008;32009 31992;31993;31994;31995;31996;31997;31998;31999;32000;32001;32002 31998 11 EGAVLKPELK KMYKVYLGDIPLKTKEGAVLKPELKRDPVS PLKTKEGAVLKPELKRDPVSTRVKLKIVPH K E G L K R 1 0 0 0 0 0 2 1 0 0 2 2 0 0 1 0 0 0 0 1 0 0 10 1 1082.6336 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 316 325 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.032913 48.423 By MS/MS 2 1.0737 1.0217 0.065011 2 Median NaN NaN NaN 0 0 Median 1.0737 1.0217 0.065011 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4826000 2212800 2613200 0 0 0 4826000 2212800 2613200 0 0 0 0 0 0 0 0 0 0 0 0 6336 3116 6594 32010;32011 32003 32003 1 EGCTEVSLLR KVCFEAKVTQNLPMKEGCTEVSLLRVGWSV NLPMKEGCTEVSLLRVGWSVDFSRPQLGED K E G L R V 0 1 0 0 1 0 2 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1162.5652 Q1KMD3;H3BQZ7 Q1KMD3 306 315 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.063678 41.427 By MS/MS 1 0.90873 0.92507 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90873 0.92507 NaN 1 1 Median NaN NaN NaN 0 0 Median 11597000 5154000 6443300 0 0 0 0 0 0 0 0 0 0 0 0 11597000 5154000 6443300 0 0 0 6337 3002 6595 32012 32004 32004 1 EGDAHPLGALPVGTLINNVESEPGR ILNSNHIGRMAVAAREGDAHPLGALPVGTL PVGTLINNVESEPGRGAQYIRAAGAGNVRS R E G G R G 2 1 2 1 0 0 3 4 1 1 3 0 0 0 3 1 1 0 0 2 0 0 25 0 2541.2823 C9IY40;Q5T653 C9IY40 178 202 MRPL2 39S ribosomal protein L2, mitochondrial yes no 3 8.194E-14 62.064 By MS/MS 1 0.95992 0.81567 NaN 1 Median NaN NaN NaN 0 0 Median 0.95992 0.81567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1631100 819500 811640 0 0 0 1631100 819500 811640 0 0 0 0 0 0 0 0 0 0 0 0 6338 660 6596 32013 32005 32005 1 EGDGVYYNELETR KASKGYEENYFFIFREGDGVYYNELETRVR FREGDGVYYNELETRVRLSKRRAKAGVQSG R E G T R V 0 1 1 1 0 0 3 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 Q8N7H5 Q8N7H5 317 329 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.04286 42.001 By MS/MS 1 0.41658 0.34909 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41658 0.34909 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5133600 3886000 1247500 0 0 0 0 0 0 0 0 0 5133600 3886000 1247500 0 0 0 0 0 0 6339 3393 6597 32014 32006 32006 1 EGDIIPPLTGATPPLIGHLK CESSSETPFHFTLPKEGDIIPPLTGATPPL PPLTGATPPLIGHLKLEPKRHSTPIGISNY K E G L K L 1 0 0 1 0 0 1 3 1 3 3 1 0 0 4 0 2 0 0 0 0 0 20 0 2038.1463 A6NNK5;Q12888;H7C3N7 A6NNK5 916 935 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2;3 0.00027488 33.405 By MS/MS By MS/MS By matching 1 4 2 0.40352 0.40577 33.572 7 Median NaN NaN NaN 0 0 Median 0.40352 0.35288 NaN 1 0 Median 0.36402 0.40411 23.161 4 1 Median 0.75692 0.68278 8.0528 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19618000 13953000 5664500 0 0 0 2249200 1571300 677900 16504000 11897000 4607000 864340 484780 379570 0 0 0 0 0 0 6340 530 6598 32015;32016;32017;32018;32019;32020;32021 32007;32008;32009;32010;32011;32012;32013 32009 7 EGDLIAAQAR VREEFKELKARNTKKEGDLIAAQARLKDLE RNTKKEGDLIAAQARLKDLEALLNSKEAAL K E G A R L 3 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1042.5407 P02545;H0YAB0;Q3BDU5 P02545 124 133 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00016835 130.28 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 2 1.2744 1.1761 53.468 10 Median 0.64826 0.64536 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2836 1.2907 NaN 1 0 Median 1.3778 1.1581 14.662 3 1 Median 1.204 1.1943 90.118 3 1 Median 1.374 1.1415 15.894 2 0 Median 267340000 104430000 162910000 1655200 860490 794690 0 0 0 42225000 18487000 23738000 14068000 6021800 8046400 148210000 55743000 92472000 61181000 23320000 37861000 6341 1834;3010 6599 32022;32023;32024;32025;32026;32027;32028;32029;32030;32031 32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027 32018 14 EGDLITLLVPEAR FSHAAGDNSTLLSFKEGDLITLLVPEARDG FKEGDLITLLVPEARDGWHYGESEKTKMRG K E G A R D 1 1 0 1 0 0 2 1 0 1 3 0 0 0 1 0 1 0 0 1 0 0 13 0 1424.7875 Q9UQB8;I3L4C2;I3L3C6;B4DWA1 Q9UQB8 398 410 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 2 0.035752 43.512 By MS/MS 1 1.0189 1.0751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0189 1.0751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1310000 775760 534240 0 0 0 0 0 0 1310000 775760 534240 0 0 0 0 0 0 0 0 0 6342 4361 6600 32032 32028 32028 1 EGDLLFTVAK LQGHERSITQIKYNREGDLLFTVAKDPIVN IKYNREGDLLFTVAKDPIVNVWYSVNGERL R E G A K D 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1091.5863 Q13347;Q5TFK1 Q13347 21 30 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.0079033 55.37 By MS/MS By matching By MS/MS By matching 3 2 1 2 1.1094 0.96002 17.883 8 Median 1.1419 1.0658 29.102 3 1 Median 1.0192 0.86925 16.977 2 0 Median 1.1044 1.0565 NaN 1 0 Median 1.1092 0.93578 0.68502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23042000 9903200 13139000 10611000 4033000 6577600 7948500 3796900 4151600 3647100 1689700 1957400 835730 383490 452240 0 0 0 0 0 0 6343 2806 6601 32033;32034;32035;32036;32037;32038;32039;32040 32029;32030;32031 32031 3 EGDPLVFATVGSNR HNQPLFGVQFNWHSKEGDPLVFATVGSNRV KEGDPLVFATVGSNRVTLYECHSQGEIRLL K E G N R V 1 1 1 1 0 0 1 2 0 0 1 0 0 1 1 1 1 0 0 2 0 0 14 0 1460.726 E9PJK2;O75530 E9PJK2 107 120 EED Polycomb protein EED yes no 2 0.03806 66.262 By matching By matching By MS/MS 1 1 1 0.93211 0.91615 13.493 3 Plateau NaN NaN NaN 0 0 Median 0.92887 0.78675 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8276 0.71955 NaN 1 0 Median 0.93211 0.93806 NaN 1 0 Median NaN NaN NaN 0 0 Median 3877500 2158200 1719300 0 0 0 1194600 670950 523620 0 0 0 550160 295600 254560 2132800 1191600 941140 0 0 0 6344 944 6602 32041;32042;32043 32032 32032 0 EGDREAIVAALLTR APFLRQEFIRIRPNREGDREAIVAALLTRT REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E G T R T 3 2 0 1 0 0 2 1 0 1 2 0 0 0 0 0 1 0 0 1 0 0 14 1 1512.826 B7Z6D5;Q96GQ7 B7Z6D5 416 429 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 2.2015E-06 92.939 By MS/MS By matching 2 1 1.1336 1.217 13.977 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0037 1.0881 17.528 2 0 Median 1.3462 1.217 NaN 1 0 Median 6944600 3236100 3708500 0 0 0 0 0 0 0 0 0 0 0 0 6801200 3176600 3624500 143440 59421 84018 6345 635 6603 32044;32045;32046 32033;32034 32034 2 EGDVLTLLESER DTSRSIIRNVKGPVREGDVLTLLESEREAR PVREGDVLTLLESEREARRLR_________ R E G E R E 0 1 0 1 0 0 3 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1359.6882 P62857 P62857 52 63 RPS28 40S ribosomal protein S28 yes yes 2 0.00052736 76.143 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0807 0.95795 24.041 4 Median 1.0954 1.064 NaN 1 0 Median 1.0663 0.86244 NaN 1 0 Median 1.328 1.3276 NaN 1 0 Median 1.0661 0.76993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16897000 7961800 8934800 13606000 6390700 7214900 2054900 942050 1112800 720360 379510 340850 515670 249480 266190 0 0 0 0 0 0 6346 2602 6604 32047;32048;32049;32050 32035;32036;32037;32038 32036 4 EGDVLTPEQAR KRGVVTLLSDYEVCKEGDVLTPEQARVLKL EVCKEGDVLTPEQARVLKLFGYEMAEFKVT K E G A R V 1 1 0 1 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1213.5939 Q9UKD2 Q9UKD2 178 188 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0036623 49.418 By matching By matching By MS/MS 1 1 2 0.77067 0.67452 72.032 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70482 0.66518 NaN 1 0 Median 1.233 1.4856 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49696 0.41821 69.575 2 0 Median 5004000 2539100 2464900 0 0 0 0 0 0 2185600 1008900 1176700 457300 195450 261850 0 0 0 2361100 1334700 1026400 6347 4308 6605 32051;32052;32053;32054 32039;32040;32041 32041 3 EGDYVLFHHEGGVDVGDVDAK HSQAEEFYVCIYATREGDYVLFHHEGGVDV FHHEGGVDVGDVDAKAQKLLVGVDEKLNPE R E G A K A 1 0 0 4 0 0 2 4 2 0 1 1 0 1 0 0 0 0 1 4 0 0 21 0 2257.0287 P53396 P53396 128 148 ACLY ATP-citrate synthase yes yes 3 0.00087827 42.172 By MS/MS 1 1.3611 1.3129 NaN 1 Median 1.3611 1.3129 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18594000 7795200 10799000 18594000 7795200 10799000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6348 2467 6606 32055 32042 32042 1 EGEAVVLPEVEPGLTAR TAASTSTLPAGEGPKEGEAVVLPEVEPGLT EAVVLPEVEPGLTAREQEATPRPRETTQLP K E G A R E 2 1 0 0 0 0 4 2 0 0 2 0 0 0 2 0 1 0 0 3 0 0 17 0 1764.9258 E9PHH3;H7C1K4;P18827 E9PHH3 101 117 SDC1 Syndecan-1 yes no 2 6.3928E-08 79.82 By MS/MS 1 1.1108 1.1641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1108 1.1641 NaN 1 1 Median NaN NaN NaN 0 0 Median 4333700 1937800 2395800 0 0 0 0 0 0 0 0 0 0 0 0 4333700 1937800 2395800 0 0 0 6349 930 6607 32056 32043 32043 1 EGEDMIAEEHFGSEK DEMSGRSGHFEQAIKEGEDMIAEEHFGSEK EGEDMIAEEHFGSEKIRERIIYIREQWANL K E G E K I 1 0 0 1 0 0 5 2 1 1 0 1 1 1 0 1 0 0 0 0 0 0 15 0 1706.7094 Q01082;A0A087WUZ3 Q01082 700 714 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 4.4653E-09 129.84 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 3 1.1392 1.0266 16.872 11 Median 1.4841 1.4254 NaN 1 0 Median 1.345 1.1834 12.686 4 0 Median 0.83254 0.92438 6.0172 3 0 Median 1.1018 0.9945 4.6085 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70010000 33169000 36841000 4999200 2154500 2844700 17439000 7463000 9976200 36753000 18946000 17807000 10818000 4605100 6213100 0 0 0 0 0 0 6350 2681 6608;6609 32057;32058;32059;32060;32061;32062;32063;32064;32065;32066;32067 32044;32045;32046;32047;32048;32049;32050;32051;32052;32053;32054;32055;32056 32048 1365 13 EGEEATAEAEEK EEEKKEDKEEKAEGKEGEEATAEAEEKQPE EGKEGEEATAEAEEKQPEEDFQCIVYFWQG K E G E K Q 3 0 0 0 0 0 6 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 12 0 1291.5416 Q13045 Q13045 963 974 FLII Protein flightless-1 homolog yes yes 2 0.0051636 41.704 By MS/MS 1 1.247 1.0814 NaN 1 Median NaN NaN NaN 0 0 Median 1.247 1.0814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1385400 627950 757480 0 0 0 1385400 627950 757480 0 0 0 0 0 0 0 0 0 0 0 0 6351 2781 6610 32068 32057;32058 32057 2 EGEEEEENTEEPPQGEEEESMETQE VTPSEKAYEKPPEKKEGEEEEENTEEPPQG EPPQGEEEESMETQE_______________ K E G Q E - 0 0 1 0 0 2 14 2 0 0 0 0 1 0 2 1 2 0 0 0 0 0 25 0 2923.0833 B4DY09;Q12905 B4DY09 328 352 ILF2 Interleukin enhancer-binding factor 2 yes no 2 1.8263E-06 54.898 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2711100 0 0 0 0 0 0 0 0 2711100 0 0 0 0 0 0 0 0 0 0 0 6352 609 6611 32069 32059 32059 1 EGEENIGGVEWLQIK MKKLSMTRTLLTEKKEGEENIGGVEWLQIK EGEENIGGVEWLQIKDNDFSYRPNMICNFL K E G I K D 0 0 1 0 0 1 4 3 0 2 1 1 0 0 0 0 0 1 0 1 0 0 15 0 1699.8417 Q969F1 Q969F1 115 129 GTF3C6 General transcription factor 3C polypeptide 6 yes yes 2 0.0012437 41.54 By MS/MS 1 0.86096 0.83135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86096 0.83135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1686700 886860 799860 0 0 0 0 0 0 1686700 886860 799860 0 0 0 0 0 0 0 0 0 6353 3581 6612 32070 32060 32060 1 EGEEPTVYSDEEEPKDESAR SQFTFKYHHVGKLLKEGEEPTVYSDEEEPK TVYSDEEEPKDESARKND____________ K E G A R K 1 1 0 2 0 0 7 1 0 0 0 1 0 0 2 2 1 0 1 1 0 0 20 1 2294.9663 O00264 O00264 173 192 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 3 1.1604E-09 85.146 By MS/MS By MS/MS 1 1 0.89653 0.88642 13.757 2 Median 0.76474 0.80425 NaN 1 0 Median 1.051 0.97698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7425900 3942200 3483800 3275000 1817800 1457200 4150900 2124400 2026500 0 0 0 0 0 0 0 0 0 0 0 0 6354 1451 6613 32071;32072 32061;32062;32063 32063 3 EGEEVMFK ILNEDNSVVLGISSREGEEVMFKTPVSITE VLGISSREGEEVMFKTPVSITEHPKINEWL R E G F K T 0 0 0 0 0 0 3 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 8 0 967.43208 Q14204 Q14204 1680 1687 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0074447 67.032 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1058 1.1311 44.741 4 Median 0.89958 0.89887 NaN 1 0 Median 2.6986 2.4079 NaN 1 0 Median 0.90889 0.972 NaN 1 0 Median 1.3455 1.3162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51632000 17101000 34531000 7325200 3631400 3693800 29126000 6075700 23050000 10447000 5212200 5234500 4734600 2181400 2553200 0 0 0 0 0 0 6355 2865 6614 32073;32074;32075;32076 32064;32065;32066;32067 32066 4 EGEFTLSAMTSGIR EYPVQRNYGFQIHTKEGEFTLSAMTSGIRR KEGEFTLSAMTSGIRRNWIQTIMKHVHPTT K E G I R R 1 1 0 0 0 0 2 2 0 1 1 0 1 1 0 2 2 0 0 0 0 0 14 0 1497.7133 A0A494BZV2;Q6WCQ1;J3KSW8 A0A494BZV2 576 589 MPRIP Myosin phosphatase Rho-interacting protein yes no 2 0.0046641 55.401 By MS/MS 1 1.169 1.2712 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.169 1.2712 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1590800 713930 876830 0 0 0 0 0 0 1590800 713930 876830 0 0 0 0 0 0 0 0 0 6356 453 6615 32077 32068 32068 1 EGEFVAQFK AKHELLQPFNVLYEKEGEFVAQFKFTVLLM NVLYEKEGEFVAQFKFTVLLMPNGPMRITS K E G F K F 1 0 0 0 0 1 2 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 9 0 1053.5131 Q9UQ80 Q9UQ80 312 320 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.0012859 83.206 By MS/MS By matching By MS/MS By MS/MS 1 1 1 4 0.97011 0.85413 24.369 7 Median 1.0953 1.0063 NaN 1 0 Median 0.96517 0.84877 NaN 1 0 Median 1.0512 1.0004 NaN 1 0 Median 0.93862 0.81464 28.989 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 317900000 147570000 170330000 47443000 22267000 25176000 1589900 764210 825670 91915000 42829000 49086000 176950000 81707000 95242000 0 0 0 0 0 0 6357 4360 6616 32078;32079;32080;32081;32082;32083;32084 32069;32070;32071;32072;32073;32074;32075;32076 32076 8 EGEIIHLISK LFAYEGTNEDELTFKEGEIIHLISKETGEA ELTFKEGEIIHLISKETGEAGWWRGELNGK K E G S K E 0 0 0 0 0 0 2 1 1 3 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1137.6394 Q9Y5K6 Q9Y5K6 292 301 CD2AP CD2-associated protein yes yes 2 0.038915 31.422 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.95319 0.84936 21.616 4 Median 0.83152 0.82058 NaN 1 0 Median 0.89852 0.80768 NaN 1 0 Median 1.2033 1.2788 NaN 1 0 Median 1.0112 0.87915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8073600 4059100 4014500 1929200 1012300 916950 938620 536710 401900 4050500 1990600 2059900 1155200 519520 635710 0 0 0 0 0 0 6358 4460 6617 32085;32086;32087;32088 32077;32078 32078 2 EGELTVAQGR LRAELDEVNKSAKKREGELTVAQGRVKDLE SAKKREGELTVAQGRVKDLESLFHRSEVEL R E G G R V 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q03252 Q03252 139 148 LMNB2 Lamin-B2 yes yes 2 0.00028636 126.41 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 1.0249 1.025 20.811 9 Median 0.91297 0.9247 NaN 1 0 Median 0.99851 0.8864 NaN 1 0 Median 1.1479 1.1739 NaN 1 0 Median 1.5275 1.2812 NaN 1 1 Median 1.0249 1.0229 17.521 3 0 Plateau 1.6343 1.3642 7.7923 2 0 Median 44295000 18446000 25849000 2825500 1434000 1391500 305720 142820 162900 7754700 3164500 4590200 752480 262970 489520 22240000 9696300 12543000 10417000 3745500 6671600 6359 2709 6618 32089;32090;32091;32092;32093;32094;32095;32096;32097 32079;32080;32081;32082;32083;32084;32085;32086;32087;32088;32089 32081 11 EGETIIELK SHTGNYTCEVTELTREGETIIELKYRVVSW VTELTREGETIIELKYRVVSWFSPNENILI R E G L K Y 0 0 0 0 0 0 3 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1030.5546 A0A2R8Y484;Q08722 A0A2R8Y484 77 85 CD47 Leukocyte surface antigen CD47 yes no 2 0.0043669 60.91 By MS/MS 1 1.0569 0.93486 NaN 1 Median NaN NaN NaN 0 0 Median 1.0569 0.93486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10997000 4733200 6264200 0 0 0 10997000 4733200 6264200 0 0 0 0 0 0 0 0 0 0 0 0 6360 362 6619 32098 32090 32090 1 EGETVEPYK HLGVVEAYSGLTKKKEGETVEPYKVNLSQD GLTKKKEGETVEPYKVNLSQDLEHQLQNII K E G Y K V 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 9 0 1050.487 Q08211 Q08211 267 275 DHX9 ATP-dependent RNA helicase A yes yes 2 0.015224 49.423 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2176 1.0298 9.1331 5 Median NaN NaN NaN 0 0 Median 1.2176 1.0298 NaN 1 1 Median 0.92181 0.99054 NaN 1 0 Median 1.2188 1.0211 NaN 1 0 Median 1.0436 1.1037 NaN 1 0 Median 1.4894 1.2447 NaN 1 0 Median 17814000 7703600 10111000 0 0 0 12263000 5020700 7242000 1759700 919440 840250 1046000 494210 551830 2310400 1083500 1227000 435230 185710 249520 6361 2736 6620 32099;32100;32101;32102;32103 32091;32092;32093;32094;32095 32094 5 EGFDALDPFIPILVSNYNPK FKPRKAYLPQELLGKEGFDALDPFIPILVS LDPFIPILVSNYNPKEFESCIQYYLENNWL K E G P K E 1 0 2 2 0 0 1 1 0 2 2 1 0 2 3 1 0 0 1 1 0 0 20 0 2248.1416 P51398 P51398 332 351 DAP3 28S ribosomal protein S29, mitochondrial yes yes 2 0.040713 20.381 By MS/MS 1 0.65455 0.73025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65455 0.73025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1202700 684000 518660 0 0 0 0 0 0 1202700 684000 518660 0 0 0 0 0 0 0 0 0 6362 2431 6621 32104 32096 32096 1 EGFDPAIVKDPLFYLDAQK HKTGTYKFQKTELRKEGFDPAIVKDPLFYL PAIVKDPLFYLDAQKGRYVPLDQEAYSRIQ K E G Q K G 2 0 0 3 0 1 1 1 0 1 2 2 0 2 2 0 0 0 1 1 0 0 19 1 2165.1045 Q6P1M0 Q6P1M0 604 622 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 3 0.042337 12.481 By MS/MS By matching 2 1 1.1934 1.1376 78.593 3 Plateau 0.55966 0.60304 98.326 2 0 Median 1.1934 1.1376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11206000 5288000 5918000 4844000 2478600 2365400 6361900 2809400 3552500 0 0 0 0 0 0 0 0 0 0 0 0 6363 3152 6622 32105;32106;32107 32097 32097 1 EGFFTNGLTLGAK ______________________________ DREGFFTNGLTLGAKKCSVIRDSLYVDGDC R E G A K K 1 0 1 0 0 0 1 3 0 0 2 1 0 2 0 0 2 0 0 0 0 0 13 0 1353.6929 C9J0J7;G5E9Q6;C9JQ45;C9J2N0;C9J712;P35080 C9J0J7 8 20 PFN2 Profilin;Profilin-2 no no 2 7.918E-07 112.36 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.1306 1.0221 23.578 5 Median 1.1306 1.0221 NaN 1 0 Median 1.3772 1.1383 NaN 1 0 Median 1.0058 0.97161 NaN 1 0 Median 1.4706 1.2128 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6625 0.66301 NaN 1 0 Median 42699000 19808000 22892000 31823000 14944000 16880000 5052600 2155800 2896700 5251000 2478800 2772100 490900 194900 296000 0 0 0 81363 34044 47319 6364 668;680 6623 32108;32109;32110;32111;32112 32098;32099;32100;32101;32102 32099 5 EGFFTNGLTLGAKK ______________________________ REGFFTNGLTLGAKKCSVIRDSLYVDGDCT R E G K K C 1 0 1 0 0 0 1 3 0 0 2 2 0 2 0 0 2 0 0 0 0 0 14 1 1481.7878 C9J0J7;G5E9Q6;C9JQ45;C9J2N0;C9J712;P35080 C9J0J7 8 21 PFN2 Profilin;Profilin-2 no no 3 0.03162 27.649 By MS/MS 1 1.1025 1.0325 NaN 1 Median 1.1025 1.0325 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5369700 2464000 2905700 5369700 2464000 2905700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6365 668;680 6624 32113 32103 32103 1 EGFHFEETLTGFK SSTVSSKILRAIALKEGFHFEETLTGFKWM LKEGFHFEETLTGFKWMGNRAKQLIDQGKT K E G F K W 0 0 0 0 0 0 3 2 1 0 1 1 0 3 0 0 2 0 0 0 0 0 13 0 1540.7198 Q96G03;H0Y921 Q96G03 391 403 PGM2 Phosphoglucomutase-2 yes no 3 0.051226 14.03 By MS/MS By matching 2 1 1.119 1.0769 3.6 3 Median 1.0576 1.0482 3.8189 2 0 Median 1.253 1.0923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5177300 2551100 2626100 4182000 2110700 2071300 995270 440440 554830 0 0 0 0 0 0 0 0 0 0 0 0 6366 3652 6625 32114;32115;32116 32104;32105 32104 2 EGFLDTLVVLHR ADPATLTRPVHDAAREGFLDTLVVLHRAGA AAREGFLDTLVVLHRAGARLDVRDAWGRLP R E G H R A 0 1 0 1 0 0 1 1 1 0 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1397.7667 J3QRG6;P42771;K7ES20;K7ENC6;P42772 J3QRG6 88 99 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B yes no 2;3 0.00015076 87.913 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.2204 1.141 17.594 7 Median 1.1638 1.1641 24.157 2 0 Median 1.1646 0.9874 8.0536 2 0 Median 1.1745 1.1913 6.0982 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8888 1.4934 NaN 1 0 Median 7982800 3730800 4251900 3829800 1857200 1972600 542380 250160 292220 3522100 1590900 1931200 0 0 0 0 0 0 88506 32599 55908 6367 1350 6626 32117;32118;32119;32120;32121;32122;32123 32106;32107;32108;32109 32107 4 EGFLLALTQGR ILCVGSVWKSWELLKEGFLLALTQGREIQA ELLKEGFLLALTQGREIQAQNFFSSFTLMK K E G G R E 1 1 0 0 0 1 1 2 0 0 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1203.6612 H7C3G9;Q9UJ70;C9JEV6;H7C286;H0YF44 H7C3G9 277 287 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.019614 35.224 By MS/MS 1 1.004 0.9745 NaN 1 Median 1.004 0.9745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1491000 743880 747170 1491000 743880 747170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6368 1265 6627 32124 32110 32110 1 EGFPITALR GQKVALKKVLMENEKEGFPITALREIKILQ LMENEKEGFPITALREIKILQLLKHENVVN K E G L R E 1 1 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 9 0 1002.5498 P50750;X6RE90 P50750 57 65 CDK9 Cyclin-dependent kinase 9 yes no 2 0.053179 30.167 By MS/MS By matching By matching 1 1 1 1.1238 1.2233 44.809 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1238 1.2233 NaN 1 0 Median 0.76733 0.64698 NaN 1 0 Median 1.4523 1.5357 NaN 1 0 Median NaN NaN NaN 0 0 Median 3742900 1713700 2029100 0 0 0 0 0 0 2129500 889150 1240400 245400 118200 127200 1368000 706390 661570 0 0 0 6369 2422 6628 32125;32126;32127 32111;32112 32111 2 EGFSIPVSADGFK FMFQGSSNTEFKSTKEGFSIPVSADGFKFG TKEGFSIPVSADGFKFGISEPGNQEKKSEK K E G F K F 1 0 0 1 0 0 1 2 0 1 0 1 0 2 1 2 0 0 0 1 0 0 13 0 1352.6612 P49792;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 1887 1899 RANBP2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 5.4521E-05 87.568 By matching By MS/MS By matching By matching 4 3 2 1 1.1089 1.0391 159.17 10 Median NaN NaN NaN 0 0 Median 1.1939 1.0467 205.86 4 0 Median 0.91537 1.008 9.9778 3 0 Median 1.1123 1.0374 4.5422 2 0 Median 24.524 32.312 NaN 1 0 Median NaN NaN NaN 0 0 Median 162310000 47147000 115170000 0 0 0 12852000 2315600 10537000 76624000 40151000 36473000 2382200 1226300 1155900 70456000 3453800 67002000 0 0 0 6370 2401;525;3762 6629 32128;32129;32130;32131;32132;32133;32134;32135;32136;32137 32113;32114;32115;32116;32117;32118 32113 6 EGFVEYTEQVVK STACQMLVCYAKELKEGFVEYTEQVVKLMV ELKEGFVEYTEQVVKLMVPLLKFYFHDGVR K E G V K L 0 0 0 0 0 1 3 1 0 0 0 1 0 1 0 0 1 0 1 3 0 0 12 0 1426.698 O00410;H0Y8C6 O00410 694 705 IPO5 Importin-5 no no 2 0.00060007 70.908 By MS/MS 1 1.187 1.1575 NaN 1 Median 1.187 1.1575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5145500 2264800 2880700 5145500 2264800 2880700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6371 1460 6630 32138 32119;32120 32119 2 EGGAEESAIR LLCEELKSLLDFLPREGGAEESAIRVGFVT DFLPREGGAEESAIRVGFVTYNKVLHFYNV R E G I R V 2 1 0 0 0 0 3 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 10 0 1017.4727 P53992;G5EA31 P53992 537 546 SEC24C Protein transport protein Sec24C yes no 2 0.019982 37.191 By matching By MS/MS 1 1 0.99693 0.92482 4.0539 2 Median 0.89351 0.89869 NaN 1 0 Median 1.1123 0.95172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2552200 1347500 1204600 334910 195350 139560 2217300 1152200 1065100 0 0 0 0 0 0 0 0 0 0 0 0 6372 1134 6631 32139;32140 32121 32121 1 EGGDGEEQDVGDAGR KEESRRKRRERKQRREGGDGEEQDVGDAGR EGGDGEEQDVGDAGRLLLRVLHVSENPVPL R E G G R L 1 1 0 3 0 1 3 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 15 0 1489.5917 Q8N1G4 Q8N1G4 292 306 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 2.2265E-09 102.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0824 1.0162 8.6774 4 Median 1.0867 1.0573 NaN 1 0 Median 1.0781 0.93297 NaN 1 0 Median 1.0648 1.1354 NaN 1 0 Median 1.1695 0.97661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14527000 6707300 7819300 4940500 2300400 2640100 5992900 2777000 3215900 2174100 984970 1189100 1419200 644940 774310 0 0 0 0 0 0 6373 3359 6632 32141;32142;32143;32144 32122;32123;32124;32125;32126;32127;32128;32129 32127 8 EGGEGYVPTSYLR MEEDKGDGWTRVRRKEGGEGYVPTSYLRVT RKEGGEGYVPTSYLRVTLN___________ K E G L R V 0 1 0 0 0 0 2 3 0 0 1 0 0 0 1 1 1 0 2 1 0 0 13 0 1426.6729 M0R0F9;Q15642 M0R0F9 421 433 TRIP10 Cdc42-interacting protein 4 yes no 2 0.014278 33.961 By matching By matching By MS/MS 1 1 1 0.94827 0.7981 17.346 3 Median NaN NaN NaN 0 0 Median 1.2151 1.0581 NaN 1 0 Median 0.72645 0.77141 NaN 1 0 Median 0.94827 0.7981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5615500 2681500 2934000 0 0 0 1939000 835540 1103400 3087200 1532200 1555100 589240 313790 275450 0 0 0 0 0 0 6374 1426 6633 32145;32146;32147 32130 32130 1 EGGFLLLHTLLR GDPASALSNMVAALREGGFLLLHTLLRGHP ALREGGFLLLHTLLRGHPLGDIVAFLTSTE R E G L R G 0 1 0 0 0 0 1 2 1 0 5 0 0 1 0 0 1 0 0 0 0 0 12 0 1367.7925 P49327;A0A0U1RQF0 P49327 1338 1349 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 5.2785E-06 99.855 By MS/MS By MS/MS By matching By matching By matching 4 8 4 2 3 1.0233 1.0672 43.24 21 Median 1.1511 1.1304 5.4563 4 0 Median 1.4435 1.2065 49.779 8 1 Median 0.89733 0.89765 13.436 4 0 Median NaN NaN NaN 0 0 Median 0.83726 0.81407 6.2106 2 0 Median 0.83174 0.69395 48.444 3 0 Median 347490000 150430000 197060000 17451000 8084800 9366500 245910000 98906000 147010000 75223000 38604000 36619000 0 0 0 5659100 3055500 2603600 3246900 1777600 1469200 6375 2377 6634 32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159;32160;32161;32162;32163;32164;32165;32166;32167;32168 32131;32132;32133;32134;32135;32136;32137;32138;32139;32140;32141;32142 32134 12 EGGGAIEEEAKEK EGQATDEKKEPKEPREGGGAIEEEAKEKTS PREGGGAIEEEAKEKTSEAPKKDEEKGKEG R E G E K T 2 0 0 0 0 0 5 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 13 1 1345.6361 Q8TAQ2;F8VXC8 Q8TAQ2 777 789 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 0.00029567 86.344 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 5 4 1 1.0443 1.0202 15.49 17 Median NaN NaN NaN 0 0 Median 1.1963 1.1179 3.7797 2 0 Median 0.77588 0.90524 17.863 5 0 Median 1.1555 1.0913 8.8853 5 0 Median 0.86078 0.9436 7.049 4 0 Median 1.4908 1.3574 NaN 1 0 Median 100310000 51528000 48787000 0 0 0 5057100 2308400 2748700 58775000 32074000 26701000 18620000 8451200 10168000 17594000 8600600 8993700 269250 93940 175310 6376 3455 6635 32169;32170;32171;32172;32173;32174;32175;32176;32177;32178;32179;32180;32181;32182;32183;32184;32185 32143;32144;32145;32146;32147;32148;32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159 32149 17 EGGGNNLYGEEMVQALK EALAAPSRFVLKPQREGGGNNLYGEEMVQA GGNNLYGEEMVQALKQLKDSEERASYILME R E G L K Q 1 0 2 0 0 1 3 4 0 0 2 1 1 0 0 0 0 0 1 1 0 0 17 0 1807.8411 A0A2R8Y430;P48637;A0A2R8Y5T7 A0A2R8Y430 368 384 GSS Glutathione synthetase yes no 2 0.049551 21.251 By MS/MS By matching 1 1 1.313 1.1939 17.976 2 Median 1.1094 1.0514 NaN 1 0 Median 1.5539 1.3557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5426400 2611100 2815300 4233300 2063400 2170000 1193100 547760 645330 0 0 0 0 0 0 0 0 0 0 0 0 6377 358 6636 32186;32187 32160 32160 1 EGGLGPLNIPLLADVTR DSQFTHLAWINTPRKEGGLGPLNIPLLADV GLGPLNIPLLADVTRRLSEDYGVLKTDEGI K E G T R R 1 1 1 1 0 0 1 3 0 1 4 0 0 0 2 0 1 0 0 1 0 0 17 0 1733.9676 P32119;A6NIW5 P32119 93 109 PRDX2 Peroxiredoxin-2 yes no 2 9.0467E-14 142.39 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.72938 0.70137 11.266 7 Median 0.7151 0.6918 5.1556 2 0 Median 0.89497 0.75048 1.4527 2 0 Median 0.59985 0.58946 10.737 2 0 Median 0.86563 0.70137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77002000 42670000 34332000 62070000 34933000 27137000 14393000 7411300 6981800 462350 280400 181950 77307 45475 31831 0 0 0 0 0 0 6378 2215 6637 32188;32189;32190;32191;32192;32193;32194 32161;32162;32163;32164;32165;32166;32167;32168;32169;32170 32164 10 EGGLLTLAGAK WTSTISSHLATKHLKEGGLLTLAGAKAALD KHLKEGGLLTLAGAKAALDGTPGMIGYGMA K E G A K A 2 0 0 0 0 0 1 3 0 0 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1028.5866 P09417;B7Z415;D6RGG7;H0Y8F7 P09417 128 138 QDPR Dihydropteridine reductase yes no 2 0.013692 37.344 By MS/MS By matching 1 1 0.064112 0.052614 313.75 2 Median 0.51873 0.48373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0079239 0.0057227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18938000 13989000 4948300 14093000 9194100 4898900 0 0 0 0 0 0 4844600 4795300 49339 0 0 0 0 0 0 6379 1914 6638 32195;32196 32171 32171 1 EGGPNPEHNSNLANILEVCR RIFSKLCLNIRLAVKEGGPNPEHNSNLANI PEHNSNLANILEVCRSKHMPKSTIETALKM K E G C R S 1 1 4 0 1 0 3 2 1 1 2 0 0 0 2 1 0 0 0 1 0 0 20 0 2219.0389 Q9BSH4 Q9BSH4 94 113 TACO1 Translational activator of cytochrome c oxidase 1 yes yes 3 0.023083 14.46 By MS/MS 1 1.1612 0.99122 NaN 1 Median NaN NaN NaN 0 0 Median 1.1612 0.99122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 784900 353300 431590 0 0 0 784900 353300 431590 0 0 0 0 0 0 0 0 0 0 0 0 6380 3813 6639 32197 32172 32172 1 EGGSIPVTLTFQEATGK RAMKTVFGVEPDLTREGGSIPVTLTFQEAT GSIPVTLTFQEATGKNVMLLPVGSADDGAH R E G G K N 1 0 0 0 0 1 2 3 0 1 1 1 0 1 1 1 3 0 0 1 0 0 17 0 1733.8836 Q96KP4 Q96KP4 414 430 CNDP2 Cytosolic non-specific dipeptidase yes yes 2 2.1258E-05 62.258 By MS/MS By matching By matching 1 1 1 1.0106 0.92484 21.272 3 Median 0.99427 0.92484 NaN 1 0 Median 1.0106 0.85962 NaN 1 0 Median 1.2855 1.2818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18206000 9059800 9145700 10282000 4751800 5530700 5501100 3129500 2371600 2422000 1178500 1243500 0 0 0 0 0 0 0 0 0 6381 3696 6640 32198;32199;32200 32173;32174 32174 2 EGGTVVYGGK QAVSMFLGAVEEAKKEGGTVVYGGKVMDRP EEAKKEGGTVVYGGKVMDRPGNYVEPTIVT K E G G K V 0 0 0 0 0 0 1 4 0 0 0 1 0 0 0 0 1 0 1 2 0 0 10 0 965.48181 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49 P49419 391 400 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.061346 26.384 By MS/MS By matching 1 1 1.3274 1.1792 26.787 2 Median NaN NaN NaN 0 0 Median 1.6673 1.4251 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0567 0.97574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135100 1152100 1982900 0 0 0 2912300 1042400 1869900 0 0 0 222740 109710 113030 0 0 0 0 0 0 6382 318 6641 32201;32202 32175 32175 1 EGHLSPDIVAEQK PANFQYPAESVLAYKEGHLSPDIVAEQKKL YKEGHLSPDIVAEQKKLEAADLVIFQSGIL K E G Q K K 1 0 0 1 0 1 2 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1421.7151 B4DLR8;H3BRK3;P15559;H3BNV2 B4DLR8 78 90 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 3 0.0084873 26.711 By MS/MS 2 0.65921 0.5584 25.718 2 Median NaN NaN NaN 0 0 Median 0.65921 0.5584 25.718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3398400 1769100 1629200 0 0 0 3398400 1769100 1629200 0 0 0 0 0 0 0 0 0 0 0 0 6383 599 6642 32203;32204 32176 32176 1 EGHPVTSEPSRPEPAVFK RTVSVLNGGFRNWLKEGHPVTSEPSRPEPA PVTSEPSRPEPAVFKATLDRSLLKTYEQVL K E G F K A 1 1 0 0 0 0 3 1 1 0 0 1 0 1 4 2 1 0 0 2 0 0 18 1 1962.9799 Q16762 Q16762 137 154 TST Thiosulfate sulfurtransferase yes yes 3 0.001027 30.974 By matching By MS/MS 1 1 0.69754 0.67651 26.057 2 Median 0.77865 0.81337 NaN 1 0 Median 0.62489 0.56267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7737300 4805700 2931500 3793600 2145000 1648600 3943700 2660800 1282900 0 0 0 0 0 0 0 0 0 0 0 0 6384 2996 6643 32205;32206 32177;32178 32177 2 EGHQVALLSGEMMVEQR HTRKTASWLAAELSKEGHQVALLSGEMMVE HQVALLSGEMMVEQRAAVIERFREGKEKVL K E G Q R A 1 1 0 0 0 2 3 2 1 0 2 0 2 0 0 1 0 0 0 2 0 0 17 0 1912.9135 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 355 371 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 3 6.8435E-15 111.22 By MS/MS 2 0.99545 1.0123 6.3044 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99545 1.0123 6.3044 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14685000 7168100 7516500 0 0 0 0 0 0 14685000 7168100 7516500 0 0 0 0 0 0 0 0 0 6385 4121;1225 6644 32207;32208 32179;32180 32180 2 EGIAASFAVK PATILTSLFTDSLVKEGIAASFAVKLFKAW DSLVKEGIAASFAVKLFKAWMAEKDANSVT K E G V K L 3 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 10 0 991.53385 E7ETZ4;Q9Y6E2;B5MCH7;E9PFD4;Q75MG1;E7EMS9 E7ETZ4 180 189 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.025636 49.715 By MS/MS 1 1.1937 1.0709 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1937 1.0709 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6449500 2992700 3456700 0 0 0 0 0 0 0 0 0 6449500 2992700 3456700 0 0 0 0 0 0 6386 892 6645 32209 32181 32181 1 EGIAMDQLLSQSLPNDGDEKYEK NLDHAHSLLRDYQQREGIAMDQLLSQSLPN LSQSLPNDGDEKYEKTIIKSGDQTFYKFMK R E G E K T 1 0 1 3 0 2 3 2 0 1 3 2 1 0 1 2 0 0 1 0 0 0 23 1 2579.2061 Q9BRP1 Q9BRP1 218 240 PDCD2L Programmed cell death protein 2-like yes yes 3 0.033412 12.802 By matching By MS/MS 1 1 1.1251 1.1363 29.212 2 Median 0.9874 0.92426 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.282 1.397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4522500 1911100 2611400 1095300 541760 553520 0 0 0 3427200 1369400 2057800 0 0 0 0 0 0 0 0 0 6387 3797 6646 32210;32211 32182 32182 1 EGIAQTVFLGLNR DFTARLFDIHKQVLKEGIAQTVFLGLNRSD LKEGIAQTVFLGLNRSDYMFQRSADGSPAL K E G N R S 1 1 1 0 0 1 1 2 0 1 2 0 0 1 0 0 1 0 0 1 0 0 13 0 1416.7725 A0A2R8Y430;P48637;A0A2R8YF34 A0A2R8Y430 113 125 GSS Glutathione synthetase yes no 2 1.31E-06 98.249 By MS/MS By matching 1 1 1.3139 1.1799 7.5267 2 Median 1.1674 1.1187 NaN 1 0 Median 1.4788 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20762000 8652600 12109000 10126000 4430200 5695600 10636000 4222300 6413700 0 0 0 0 0 0 0 0 0 0 0 0 6388 358 6647 32212;32213 32183;32184;32185 32184 3 EGICALGGTSELSSEGTQHSYSEEEK SSDIAKTFRKAINRKEGICALGGTSELSSE LSSEGTQHSYSEEEKYAFVNWINKALENDP K E G E K Y 1 0 0 0 1 1 6 4 1 1 2 1 0 0 0 5 2 0 1 0 0 0 26 0 2784.2032 P13797;A0A0A0MSQ0 P13797 101 126 PLS3 Plastin-3 yes no 3 0.0031798 24.276 By MS/MS By MS/MS 1 1 1.1717 1.0505 10.426 2 Median 1.1875 1.1308 NaN 1 0 Median 1.156 0.97581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13163000 6005200 7157600 6657000 3151600 3505400 6505800 2853600 3652200 0 0 0 0 0 0 0 0 0 0 0 0 6389 1995 6648 32214;32215 32186;32187 32186 2 EGIDPTPYYWYTDQR MRIFDSEEILAGYKREGIDPTPYYWYTDQR EGIDPTPYYWYTDQRKYGTCPHGGYGLGLE R E G Q R K 0 1 0 2 0 1 1 1 0 1 0 0 0 0 2 0 2 1 3 0 0 0 15 0 1902.8424 O43776 O43776 492 506 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.00034831 64.878 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.86323 0.85421 6.9995 4 Linear 0.82929 0.79644 NaN 1 0 Median 0.85648 0.74137 NaN 1 0 Median 0.87003 0.87699 NaN 1 0 Median 0.93755 0.78286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19578000 10268000 9309800 7201000 3881700 3319300 1090400 559880 530480 9339200 4895900 4443300 1947500 930690 1016800 0 0 0 0 0 0 6390 1589 6649 32216;32217;32218;32219 32188;32189;32190;32191 32189 4 EGIDPTPYYWYTDQRK MRIFDSEEILAGYKREGIDPTPYYWYTDQR GIDPTPYYWYTDQRKYGTCPHGGYGLGLER R E G R K Y 0 1 0 2 0 1 1 1 0 1 0 1 0 0 2 0 2 1 3 0 0 0 16 1 2030.9374 O43776 O43776 492 507 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 3 3.188E-05 64.136 By MS/MS By matching By matching 1 1 1 0.90385 0.84381 14.857 3 Median 0.77492 0.77771 NaN 1 0 Median 0.90385 0.84381 NaN 1 0 Median 0.9296 1.0375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12235000 6099800 6135500 8522900 4421100 4101800 249560 131240 118310 3462900 1547400 1915500 0 0 0 0 0 0 0 0 0 6391 1589 6650 32220;32221;32222 32192;32193 32193 2 EGIIPANYVQK TKDPNWYKAKNKVGREGIIPANYVQKREGV KVGREGIIPANYVQKREGVKAGTKLSLMPW R E G Q K R 1 0 1 0 0 1 1 1 0 2 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1230.6608 P41240;H3BUM9 P41240 57 67 CSK Tyrosine-protein kinase CSK yes no 2 0.011785 60.118 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6392 2300 6651 32223;32224;32225 32194;32195;32196 32196 3 EGINIFLDGYVPTENLR VPSAYGVVTMPFSVREGINIFLDGYVPTEN INIFLDGYVPTENLRFRDASLVFKVAETAN R E G L R F 0 1 2 1 0 0 2 2 0 2 2 0 0 1 1 0 1 0 1 1 0 0 17 0 1948.9894 P61221;D6R9I9 P61221 307 323 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 1.7841E-13 114.72 By MS/MS 1 0.83989 0.72865 NaN 1 Median NaN NaN NaN 0 0 Median 0.83989 0.72865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2941700 1478300 1463400 0 0 0 2941700 1478300 1463400 0 0 0 0 0 0 0 0 0 0 0 0 6393 2550 6652 32226 32197;32198 32198 2 EGIPALDNFLDK PSQVVAETRKRKGLKEGIPALDNFLDKL__ GLKEGIPALDNFLDKL______________ K E G D K L 1 0 1 2 0 0 1 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 0 1330.6769 P13639 P13639 846 857 EEF2 Elongation factor 2 yes yes 2 0.00013206 154.01 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.92042 0.90939 15.692 6 Median 0.93496 0.90939 0.19557 2 0 Median 0.80347 0.70579 NaN 1 0 Median 0.90961 0.99905 NaN 1 0 Median 0.80844 0.70314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1324 0.97148 NaN 1 0 Median 326210000 173100000 153110000 10744000 5455000 5288500 310900000 165290000 145600000 3398200 1725200 1673000 991780 546000 445790 0 0 0 183690 85102 98589 6394 1992 6653 32227;32228;32229;32230;32231;32232 32199;32200;32201;32202;32203;32204;32205;32206;32207;32208 32207 10 EGIPALDNFLDKL PSQVVAETRKRKGLKEGIPALDNFLDKL__ LKEGIPALDNFLDKL_______________ K E G K L - 1 0 1 2 0 0 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 13 1 1443.7609 P13639 P13639 846 858 EEF2 Elongation factor 2 yes yes 2 1.6572E-05 96.171 By MS/MS By MS/MS By matching 5 2 1 0.93822 0.89136 63.896 8 Median 1.0023 0.92655 12.609 5 0 Median 0.36187 0.31976 102.68 2 0 Median 1.0605 1.1462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41483000 19937000 21545000 37395000 17909000 19486000 1566000 833140 732830 2521600 1195500 1326100 0 0 0 0 0 0 0 0 0 6395 1992 6654 32233;32234;32235;32236;32237;32238;32239;32240 32209;32210;32211;32212 32210 4 EGIPGLYR PQLNMVGLFRRIISKEGIPGLYRGITPNFM FRRIISKEGIPGLYRGITPNFMKVLPAVGI K E G Y R G 0 1 0 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 1 0 0 0 8 0 903.48142 Q6NUK1 Q6NUK1 438 445 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.0055194 75.311 By MS/MS By matching By matching By matching 2 1 1 1 1.1892 1.128 11.341 5 Median 1.0621 1.0419 16.684 2 0 Median 1.3042 1.128 NaN 1 0 Median 0.89856 0.9588 NaN 1 0 Median 1.3196 1.1667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12128000 5514700 6613100 9329300 4406600 4922700 1125000 428170 696820 1376200 548260 827900 297350 131720 165640 0 0 0 0 0 0 6396 3143 6655 32241;32242;32243;32244;32245 32213;32214 32213 2 EGIPPDQQR PSDTIENVKAKIQDKEGIPPDQQRLIFAGK AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K E G Q R L 0 1 0 1 0 2 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 9 0 1038.5094 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422;F5GZ39;J3QSA3 P0CG48 34 42 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2 0.0019502 75.854 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 1 2 2 2 0.90814 0.71339 22.398 12 Median NaN NaN NaN 0 0 Median 0.91226 0.73786 30.267 5 0 Median 0.64018 0.63997 NaN 1 0 Median 1.004 0.72508 2.4655 2 0 Median 0.50559 0.54638 16.952 2 0 Median 0.91147 0.724 1.9205 2 0 Median 20320000 10824000 9496200 0 0 0 5924400 3034400 2890000 2669400 1561300 1108100 6260100 3039100 3221100 3716800 2289400 1427400 1749100 899520 849600 6397 606 6656 32246;32247;32248;32249;32250;32251;32252;32253;32254;32255;32256;32257 32215;32216;32217;32218;32219;32220;32221;32222;32223;32224;32225;32226;32227;32228 32218 14 EGIPVMR SLLPFWYTLLYQAHREGIPVMRPLWVQYPQ TLLYQAHREGIPVMRPLWVQYPQDVTTFNI R E G M R P 0 1 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 7 0 800.42146 E9PKU7;Q14697;F5H6X6 Q14697 721 727 GANAB Neutral alpha-glucosidase AB no no 2 0.01617 69.39 By MS/MS 2 1.1853 1.0076 0.46097 2 Median NaN NaN NaN 0 0 Median 1.1853 1.0076 0.46097 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17896000 8345500 9550000 0 0 0 17896000 8345500 9550000 0 0 0 0 0 0 0 0 0 0 0 0 6398 2896;951 6657 32258;32259 32229;32230;32231;32232;32233 32232 5 EGIREETVSLR DVYTGDALRICIVTKEGIREETVSLRKD__ IVTKEGIREETVSLRKD_____________ K E G L R K 0 2 0 0 0 0 3 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 11 1 1287.6783 P20618 P20618 229 239 PSMB1 Proteasome subunit beta type-1 yes yes 2;3 0.00062774 112.93 By MS/MS By MS/MS By matching 2 2 1 1.1301 0.96504 11.637 5 Median 0.93658 1.0011 6.9884 2 0 Median 1.1332 0.9624 0.38773 2 0 Median 1.2086 1.2531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38344000 18557000 19788000 21109000 11329000 9780400 14663000 6206800 8456700 2571800 1021300 1550400 0 0 0 0 0 0 0 0 0 6399 2081 6658 32260;32261;32262;32263;32264 32234;32235;32236;32237 32236 4 EGITAIGGTSTISSEGTQHSYSEEEK SKDISKTFRKIINKREGITAIGGTSTISSE ISSEGTQHSYSEEEKVAFVNWINKALENDP R E G E K V 1 0 0 0 0 1 5 4 1 3 0 1 0 0 0 5 4 0 1 0 0 0 26 0 2697.2253 Q14651;C9JAM8 Q14651 100 125 PLS1 Plastin-1 yes no 3 1.4309E-08 43.099 By MS/MS By matching By matching 1 1 1 1.1749 1.0078 8.1481 3 Median 1.0246 0.96888 NaN 1 0 Median 1.3129 1.1332 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1749 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12385000 5544500 6840300 8830200 3938700 4891500 2426300 1048200 1378100 0 0 0 1128200 557480 570690 0 0 0 0 0 0 6400 2884 6659 32265;32266;32267 32238;32239 32238 2 EGITVYSMQFGGYAK DPPAPSDKSVKIEEREGITVYSMQFGGYAK EGITVYSMQFGGYAKEADYVAQATRLRAAL R E G A K E 1 0 0 0 0 1 1 3 0 1 0 1 1 1 0 1 1 0 2 1 0 0 15 0 1649.7759 Q9NRV9;A0A3B3IRV5 Q9NRV9 126 140 HEBP1 Heme-binding protein 1 yes no 2 0.00071392 46.844 By MS/MS By matching 1 1 1.3384 1.1915 25.031 2 Median 1.074 0.99823 NaN 1 0 Median 1.6678 1.4222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19726000 8851300 10875000 18394000 8365400 10029000 1331900 485940 845990 0 0 0 0 0 0 0 0 0 0 0 0 6401 4088 6660 32268;32269 32240 32240 1 EGIVALRR NQKGIDPFSLDALSKEGIVALRRAKRRNME SLDALSKEGIVALRRAKRRNMERLTLACGG K E G R R A 1 2 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 1 912.5505 P40227 P40227 308 315 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.0040132 104.45 By MS/MS By MS/MS 2 1 1.2341 1.2159 5.6967 3 Plateau 1.2272 1.2241 0.95227 2 0 Median 1.2307 1.1099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12469000 6032900 6436400 11356000 5496700 5859100 1113600 536230 577350 0 0 0 0 0 0 0 0 0 0 0 0 6402 2285 6661 32270;32271;32272 32241;32242;32243 32242 3 EGIVQTEQIR RLDKERLAARLEGHKEGIVQTEQIRSLSEA LEGHKEGIVQTEQIRSLSEAMSVEKIAAIK K E G I R S 0 1 0 0 0 2 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640 Q6P1J9 162 171 CDC73 Parafibromin yes no 2 0.00063775 112.84 By MS/MS 1 1.0086 1.0295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0086 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6631000 3457300 3173700 0 0 0 0 0 0 6631000 3457300 3173700 0 0 0 0 0 0 0 0 0 6403 3150 6662 32273 32244 32244 1 EGIVTATEQEVK EKYAKFFEDYGLFMREGIVTATEQEVKEDI FMREGIVTATEQEVKEDIAKLLRYESSALP R E G V K E 1 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 2 0 0 2 0 0 12 0 1302.6667 I3L0K7;Q12931 Q12931 450 461 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.00020862 85.355 By MS/MS By matching 1 1 1.0159 0.99081 22.024 2 Median NaN NaN NaN 0 0 Median 1.0165 0.84792 NaN 1 0 Median 1.0152 1.1578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28063000 12023000 16040000 0 0 0 24742000 10809000 13933000 3320800 1213900 2106900 0 0 0 0 0 0 0 0 0 6404 2771;1269 6663 32274;32275 32245;32246 32246 2 EGIVTATEQEVKEDIAK EKYAKFFEDYGLFMREGIVTATEQEVKEDI IVTATEQEVKEDIAKLLRYESSALPSGQLT R E G A K L 2 0 0 1 0 1 4 1 0 2 0 2 0 0 0 0 2 0 0 2 0 0 17 1 1858.9524 I3L0K7;Q12931 Q12931 450 466 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 3 6.6957E-07 100.41 By MS/MS By MS/MS 2 1 1.3018 1.1943 9.7682 3 Plateau 1.0494 1.0319 3.1577 2 0 Median 1.3072 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48496000 20689000 27807000 17518000 7633900 9884300 30977000 13055000 17923000 0 0 0 0 0 0 0 0 0 0 0 0 6405 2771;1269 6664 32276;32277;32278 32247;32248;32249 32249 2 EGKEEAEETNVLPK GLSEEDDSLVDVYYREGKEEAEETNVLPKE REGKEEAEETNVLPKEKQTKPAEAPRLQLS R E G P K E 1 0 1 0 0 0 5 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 14 1 1571.7679 Q14690;A0A3B3IUD7 Q14690 1506 1519 PDCD11 Protein RRP5 homolog yes no 3 0.01779 33.842 By MS/MS 2 1.0691 1.2359 13.575 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0691 1.2359 13.575 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15700000 7317900 8381800 0 0 0 0 0 0 15700000 7317900 8381800 0 0 0 0 0 0 0 0 0 6406 448 6665 32279;32280 32250;32251 32250 2 EGKEVLVVNSQGEISR QQVAAAAHEANKLFKEGKEVLVVNSQGEIS GKEVLVVNSQGEISRLSTKKEVIMKGNINN K E G S R L 0 1 1 0 0 1 3 2 0 1 1 1 0 0 0 2 0 0 0 3 0 0 16 1 1742.9163 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 808 823 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 1.9943E-08 92.8 By MS/MS 1 0.2662 0.30908 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2662 0.30908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22145000 15408000 6737600 0 0 0 0 0 0 22145000 15408000 6737600 0 0 0 0 0 0 0 0 0 6407 2762 6666 32281 32252 32252 1 EGKPTIVEEDDPELFK YVEHTVKERKKQLKKEGKPTIVEEDDPELF GKPTIVEEDDPELFKQAVYKQTMKLFAELE K E G F K Q 0 0 0 2 0 0 4 1 0 1 1 2 0 1 2 0 1 0 0 1 0 0 16 1 1844.9044 O75937 O75937 144 159 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2;3 2.4187E-07 134.61 By MS/MS By MS/MS By matching 2 2 1 0.83897 0.80249 19.062 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76238 0.79258 3.3438 2 0 Median 0.87564 0.76888 6.0504 2 0 Median NaN NaN NaN 0 0 Median 1.3659 1.1855 NaN 1 0 Median 105870000 58563000 47305000 0 0 0 0 0 0 101750000 56223000 45522000 3455900 1941100 1514800 0 0 0 666320 398770 267550 6408 1709 6667 32282;32283;32284;32285;32286 32253;32254;32255;32256;32257;32258 32255 6 EGLAELYEYK LAEIFKKIGSKENTKEGLAELYEYKKKYSD KENTKEGLAELYEYKKKYSDADIEPFLKNS K E G Y K K 1 0 0 0 0 0 3 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1213.5867 Q14008;H0YDX5 Q14008 1848 1857 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00037009 81.594 By MS/MS By matching 3 1 1.1886 1.0444 6.8354 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1982 1.0861 8.125 3 0 Median NaN NaN NaN 0 0 Median 1.1791 1.0043 NaN 1 0 Median 2298300 1030200 1268100 0 0 0 0 0 0 0 0 0 2100000 930220 1169800 0 0 0 198270 99949 98320 6409 2850 6668 32287;32288;32289;32290 32259;32260 32260 2 EGLDEVAGIINDAK ELVSKIGDKNWKIRKEGLDEVAGIINDAKF KEGLDEVAGIINDAKFIQPNIGELPTALKG K E G A K F 2 0 1 2 0 0 2 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1442.7253 Q14008 Q14008 879 892 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 3.0448E-07 114.86 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 1 1.1749 1.1551 15.133 6 Median 1.0665 1.0285 NaN 1 0 Median 1.0275 0.91263 NaN 1 0 Median 1.1926 1.2952 3.257 2 0 Median 1.1663 1.0541 NaN 1 0 Median 1.222 1.2873 NaN 1 0 Median NaN NaN NaN 0 0 Median 38667000 17482000 21185000 7225100 3333700 3891400 3196800 1542400 1654400 22301000 9921300 12380000 2886100 1306500 1579600 3058100 1378300 1679800 0 0 0 6410 2850 6669 32291;32292;32293;32294;32295;32296 32261;32262;32263;32264;32265;32266;32267 32264 7 EGLDWDLIYVGR FFKRRLMNLMRDVEREGLDWDLIYVGRKRM VEREGLDWDLIYVGRKRMQVEHPEKAVPRV R E G G R K 0 1 0 2 0 0 1 2 0 1 2 0 0 0 0 0 0 1 1 1 0 0 12 0 1434.7143 Q8NBJ5;M0QX72 Q8NBJ5 458 469 COLGALT1 Procollagen galactosyltransferase 1 yes no 2 0.0034893 45.997 By MS/MS 1 1.1678 1.0135 NaN 1 Median NaN NaN NaN 0 0 Median 1.1678 1.0135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3514900 1815800 1699100 0 0 0 3514900 1815800 1699100 0 0 0 0 0 0 0 0 0 0 0 0 6411 3404 6670 32297 32268 32268 1 EGLEEGDQILR GIFVAGVLEDSPAAKEGLEEGDQILRVNNV PAAKEGLEEGDQILRVNNVDFTNIIREEAV K E G L R V 0 1 0 1 0 1 3 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1257.6201 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 447 457 TJP1 Tight junction protein ZO-1 yes no 2 0.00021132 98.033 By MS/MS 1 0.66432 0.68543 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66432 0.68543 NaN 1 0 Median NaN NaN NaN 0 0 Median 8543300 5103400 3440000 0 0 0 0 0 0 0 0 0 0 0 0 8543300 5103400 3440000 0 0 0 6412 104 6671 32298 32269 32269 1 EGLELLK VGDEGGFAPNILENKEGLELLKTAIGKAGY APNILENKEGLELLKTAIGKAGYTDKVVIG K E G L K T 0 0 0 0 0 0 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 800.46437 P06733;A0A2R8Y6G6 P06733 222 228 ENO1 Alpha-enolase yes no 2 0.013187 76.847 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1 1.2837 1.2038 16.463 10 Median 1.2881 1.2038 3.5853 4 0 Median 1.2031 1.0241 0.071612 2 0 Median 1.4186 1.3727 11.778 2 0 Median 1.2206 1.101 NaN 1 0 Median 1.817 1.7448 NaN 1 0 Median NaN NaN NaN 0 0 Median 443850000 194400000 249450000 112310000 48764000 63542000 250040000 110550000 139490000 45199000 19359000 25840000 34692000 15239000 19454000 1607100 490120 1117000 0 0 0 6413 1873 6672 32299;32300;32301;32302;32303;32304;32305;32306;32307;32308 32270;32271;32272;32273;32274;32275;32276 32275 7 EGLELPEDEEEK QLKEFEGKTLVSVTKEGLELPEDEEEKKKQ VTKEGLELPEDEEEKKKQEEKKTKFENLCK K E G E K K 0 0 0 1 0 0 6 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 12 0 1415.6304 P07900;Q58FG0;P08238;Q58FF7;Q58FF6 P07900 547 558 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P;HSP90AB4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4 no no 2 4.829E-06 142.36 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.96159 0.83109 10.853 5 Median 0.96159 0.83109 NaN 1 0 Median 0.94065 0.81407 0.54827 2 0 Median 0.96642 1.052 NaN 1 0 Median 1.0179 0.88202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 164010000 84190000 79824000 74366000 38739000 35627000 71590000 36291000 35299000 13643000 6929400 6713500 4415500 2231200 2184200 0 0 0 0 0 0 6414 1894;1899;3039 6673 32309;32310;32311;32312;32313 32277;32278;32279;32280;32281;32282;32283;32284;32285 32284 9 EGLELPEDEEEKK QLKEFEGKTLVSVTKEGLELPEDEEEKKKQ TKEGLELPEDEEEKKKQEEKKTKFENLCKI K E G K K K 0 0 0 1 0 0 6 1 0 0 2 2 0 0 1 0 0 0 0 0 0 0 13 1 1543.7253 P07900;Q58FG0;P08238;Q58FF7;Q58FF6 P07900 547 559 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P;HSP90AB4P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4 no no 2;3 0.0040342 46.462 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 0.88861 0.88923 22.261 8 Median 0.85122 0.87198 7.1553 2 1 Median 0.95182 0.92164 14.086 3 0 Median NaN NaN NaN 0 0 Median 0.94422 0.9224 9.5633 2 0 Median NaN NaN NaN 0 0 Median 0.57865 0.51401 NaN 1 0 Median 86247000 46656000 39591000 52965000 29501000 23464000 28260000 14532000 13728000 0 0 0 4051800 2013900 2037900 0 0 0 970130 608900 361230 6415 1894;1899;3039 6674 32314;32315;32316;32317;32318;32319;32320;32321 32286;32287;32288;32289;32290;32291;32292;32293 32291 8 EGLELPEDEEEKKK QLKEFEGKTLVSVTKEGLELPEDEEEKKKQ KEGLELPEDEEEKKKQEEKKTKFENLCKIM K E G K K Q 0 0 0 1 0 0 6 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 14 2 1671.8203 P07900;Q58FG0;P08238;Q58FF7 P07900 547 560 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2;3;4 9.5341E-09 106.54 By MS/MS By MS/MS By MS/MS By MS/MS 4 8 2 3 0.94155 0.95636 18.832 17 Median 0.87764 0.87635 15.235 4 0 Median 0.93683 0.93487 22.376 8 0 Median 0.88209 1.076 10.291 2 0 Median 0.97263 1.0318 1.9223 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 254990000 129840000 125150000 131960000 67642000 64317000 92020000 46167000 45853000 15204000 8061300 7142500 15804000 7970500 7834000 0 0 0 0 0 0 6416 1894;1899 6675 32322;32323;32324;32325;32326;32327;32328;32329;32330;32331;32332;32333;32334;32335;32336;32337;32338 32294;32295;32296;32297;32298;32299;32300;32301;32302;32303;32304;32305;32306;32307;32308;32309;32310;32311;32312;32313;32314;32315;32316;32317;32318;32319;32320 32309 27 EGLEYIPLR PWFFKHVENYLKTNREGLEYIPLRHYYHRH YLKTNREGLEYIPLRHYYHRHTRSIFWELQ R E G L R H 0 1 0 0 0 0 2 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1088.5866 A0A0A0MTI1;Q15392 A0A0A0MTI1 317 325 DHCR24 Delta(24)-sterol reductase yes no 2 0.00085609 94.114 By MS/MS By MS/MS By MS/MS 2 2 1 0.87397 0.82832 9.7358 5 Median 0.81595 0.78352 7.8633 2 0 Median 1.1105 0.92959 3.5256 2 0 Median 0.81337 0.82014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53952000 27564000 26388000 26164000 14903000 11260000 25093000 11034000 14059000 2695200 1627100 1068100 0 0 0 0 0 0 0 0 0 6417 192 6676 32339;32340;32341;32342;32343 32321;32322;32323;32324;32325;32326;32327;32328 32321 8 EGLIDTAVK GLTPTEFFFHAMGGREGLIDTAVKTAETGY HAMGGREGLIDTAVKTAETGYIQRRLIKSM R E G V K T 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 944.51786 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 845 853 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0040114 61.999 By matching By matching By MS/MS 1 1 1 1.0795 0.98086 19.603 3 Median NaN NaN NaN 0 0 Median 1.4282 1.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0795 0.98086 NaN 1 0 Median 0.78381 0.82073 NaN 1 0 Median NaN NaN NaN 0 0 Median 13165000 6213600 6951000 0 0 0 6145500 2591200 3554300 0 0 0 731420 340670 390750 6287600 3281700 3005900 0 0 0 6418 486 6677 32344;32345;32346 32329 32329 1 EGLISQDGSSLEALLR SFPSIKPDTDQTLKKEGLISQDGSSLEALL GLISQDGSSLEALLRTDPLEKRGAPDPRVD K E G L R T 1 1 0 1 0 1 2 2 0 1 4 0 0 0 0 3 0 0 0 0 0 0 16 0 1686.8788 Q92785;J3KMZ8 Q92785 109 124 DPF2 Zinc finger protein ubi-d4 yes no 2;3 2.3422E-05 83.397 By MS/MS By MS/MS By matching By matching 1 4 1 2 0.98594 0.99659 11.62 8 Median NaN NaN NaN 0 0 Median 0.95376 0.83615 NaN 1 0 Median 1.0068 0.99659 11.189 4 1 Median 1.2983 1.1308 NaN 1 0 Median 0.96384 0.98629 6.3369 2 0 Median NaN NaN NaN 0 0 Median 40567000 19113000 21454000 0 0 0 656160 306470 349690 37166000 17600000 19566000 1524000 653100 870860 1220400 553320 667110 0 0 0 6419 1299 6678 32347;32348;32349;32350;32351;32352;32353;32354 32330;32331;32332;32333;32334;32335;32336;32337 32336 8 EGLLATHPRPGQERPGVAR AESKESVGSRDSSKREGLLATHPRPGQERP ATHPRPGQERPGVARKEPARAEAPRKTEKE R E G A R K 2 3 0 0 0 1 2 3 1 0 2 0 0 0 3 0 1 0 0 1 0 0 19 2 2040.0977 Q66K74 Q66K74 485 503 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 4;5 1.9878E-05 46.621 By MS/MS By MS/MS 4 1 0.64757 0.69677 16.615 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62725 0.71574 18.375 4 0 Median 0.70869 0.69677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20902000 12537000 8364700 0 0 0 0 0 0 17377000 10423000 6954600 3524600 2114400 1410100 0 0 0 0 0 0 6420 3121 6679 32355;32356;32357;32358;32359 32338;32339;32340;32341 32341 4 EGLLSMANAGR GEKFEDENFHYKHDREGLLSMANAGRNTNG KHDREGLLSMANAGRNTNGSQFFITTVPTP R E G G R N 2 1 1 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1117.555 Q08752 Q08752 115 125 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 2 0.0016986 78.149 By MS/MS By MS/MS 1 1 1.0211 0.95084 21.038 2 Median 1.1108 1.1033 NaN 1 1 Median 0.93873 0.8194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15790000 6961700 8828500 7645800 3451600 4194200 8144400 3510100 4634300 0 0 0 0 0 0 0 0 0 0 0 0 6421 2742 6680 32360;32361 32342;32343;32344 32344 3 EGLMLDSHEELYK EYATLMTQCKEGAQKEGLMLDSHEELYKWF QKEGLMLDSHEELYKWFTSQVIRNLHVVFT K E G Y K W 0 0 0 1 0 0 3 1 1 0 3 1 1 0 0 1 0 0 1 0 0 0 13 0 1562.7287 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3040 3052 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 3.8356E-10 175.65 By MS/MS By MS/MS By MS/MS By matching 3 2 4 3 1.1697 1.084 23.973 11 Median 1.0196 1.0234 40.662 3 0 Median 1.1749 1.0352 6.5157 2 0 Median 1.053 1.1237 24.455 3 0 Median 1.5121 1.4058 17.231 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116990000 54933000 62055000 62177000 30066000 32111000 18601000 8327000 10275000 35230000 16127000 19103000 979810 412080 567730 0 0 0 0 0 0 6422 2865 6681;6682 32362;32363;32364;32365;32366;32367;32368;32369;32370;32371;32372;32373 32345;32346;32347;32348;32349;32350;32351;32352;32353;32354;32355;32356;32357 32346 1549 13 EGLNLPSQLAHR SIEDICHVLSTVCKKEGLNLPSQLAHRLAE CKKEGLNLPSQLAHRLAEKSCRNLRKALLM K E G H R L 1 1 1 0 0 1 1 1 1 0 3 0 0 0 1 1 0 0 0 0 0 0 12 0 1333.7102 P40938;A0A087X270 P40938 203 214 RFC3 Replication factor C subunit 3 yes no 2;3 0.00017946 62.408 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1.0188 0.97902 20.51 7 Median 0.84896 0.84336 12.912 2 1 Median 1.1848 1.0613 NaN 1 0 Median 0.90867 0.94247 9.6508 2 0 Median 1.128 0.97902 NaN 1 0 Median 1.4017 1.487 NaN 1 0 Median NaN NaN NaN 0 0 Median 26403000 13958000 12444000 11885000 6467800 5417200 240520 95891 144630 12495000 6670400 5824600 570290 261980 308310 1212100 462380 749720 0 0 0 6423 2294 6683 32374;32375;32376;32377;32378;32379;32380 32358;32359;32360;32361;32362;32363 32359 6 EGLNSVIKPTQYKPVPDEEPNSTDVEETLER QQYYQALSSSSIMNKEGLNSVIKPTQYKPV DEEPNSTDVEETLERIKNNDPKLEEVNLNN K E G E R I 0 1 2 2 0 1 6 1 0 1 2 2 0 0 4 2 3 0 1 3 0 0 31 2 3512.7159 P28289 P28289 159 189 TMOD1 Tropomodulin-1 yes yes 4 0.0019892 28.905 By MS/MS 1 0.34202 0.38345 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34202 0.38345 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5060200 3869500 1190700 0 0 0 0 0 0 5060200 3869500 1190700 0 0 0 0 0 0 0 0 0 6424 2164 6684 32381 32364 32364 1 EGLPEDGTLYR YLPQEEKSPLFSVQREGLPEDGTLYRINRF SVQREGLPEDGTLYRINRFSSITAHPERWD R E G Y R I 0 1 0 1 0 0 2 2 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1248.5986 Q8WUA4;A0A087WZD8 Q8WUA4 363 373 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.00014272 84.615 By MS/MS By matching 2 1 2.0055 2.2411 128.84 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85043 0.9012 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.7294 5.5733 NaN 1 0 Median NaN NaN NaN 0 0 Median 25637000 11464000 14173000 0 0 0 0 0 0 19307000 10509000 8798100 0 0 0 6329600 955050 5374500 0 0 0 6425 3487 6685 32382;32383;32384 32365;32366 32366 2 EGLPLMVFANWR DSAFKTYQAIKDFNREGLPLMVFANWRGFS FNREGLPLMVFANWRGFSGGMKDMYDQVLK R E G W R G 1 1 1 0 0 0 1 1 0 0 2 0 1 1 1 0 0 1 0 1 0 0 12 0 1431.7333 Q13085;Q59FY4 Q13085 2036 2047 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0062099 39.022 By MS/MS By matching 2 1 0.7996 0.80692 18.526 3 Median 0.76309 0.76761 7.0642 2 0 Median 1.1787 1.0455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4860300 2512800 2347400 4525000 2367300 2157700 335300 145590 189710 0 0 0 0 0 0 0 0 0 0 0 0 6426 2784 6686 32385;32386;32387 32367;32368;32369;32370 32367 4 EGLQNMEAR YEEGLKHEANNPQLKEGLQNMEARLAERKF NNPQLKEGLQNMEARLAERKFMNPFNMPNL K E G A R L 1 1 1 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1046.4815 P31948;F5H783;F5GXD8 P31948 110 118 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS 2 3 1 1.1622 1.0208 25.251 5 Median 1.161 1.1347 2.5744 2 0 Median 1.1622 1.002 28.379 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122390000 56852000 65536000 31792000 14322000 17471000 90596000 42531000 48065000 0 0 0 0 0 0 0 0 0 0 0 0 6427 2212 6687;6688 32388;32389;32390;32391;32392;32393 32371;32372;32373;32374;32375;32376;32377 32372 955 7 EGLTSIEEVTK VRSQVMDEATALQLREGLTSIEEVTKNLQK LQLREGLTSIEEVTKNLQKFLEGTSCIAGV R E G T K N 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1204.6187 Q15149;H0YDN1 Q15149 4050 4060 PLEC Plectin yes no 2 0.00019593 81.525 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.0992 1.0542 34.184 6 Median 0.77913 0.78204 NaN 1 1 Median 1.3095 1.1586 44.264 2 1 Median 0.6803 0.70439 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2917 1.3437 3.4002 2 0 Median NaN NaN NaN 0 0 Median 69068000 35806000 33262000 32503000 17910000 14593000 17236000 8794300 8441600 6860100 3361700 3498400 0 0 0 12469000 5739500 6729400 0 0 0 6428 2933 6689 32394;32395;32396;32397;32398;32399;32400 32378;32379;32380;32381;32382 32381 5 EGLVDTAVK GIKPPEFFFHCMAGREGLVDTAVKTSRSGY HCMAGREGLVDTAVKTSRSGYLQRCIIKHL R E G V K T 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 930.50221 O14802;O95602;B9ZVN9 O95602 973 981 POLR3A;POLR1A DNA-directed RNA polymerase III subunit RPC1;DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase no no 2 0.020027 55.531 By MS/MS 1 1.0592 1.1803 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0592 1.1803 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4050900 1904500 2146400 0 0 0 0 0 0 4050900 1904500 2146400 0 0 0 0 0 0 0 0 0 6429 1781;1496 6690 32401 32383 32383 1 EGLVMVEVR QFADSKGDVGLGLVKEGLVMVEVRKEKQFQ GLGLVKEGLVMVEVRKEKQFQKVITEYLNA K E G V R K 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 3 0 0 9 0 1030.5481 Q7KZF4 Q7KZF4 858 866 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0049104 73.248 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.1084 1.009 23.903 6 Median 1.032 0.99554 NaN 1 1 Median 1.2219 1.0227 34.988 3 0 Median 1.0782 1.1042 NaN 1 0 Median 1.1394 0.97009 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23712000 11263000 12449000 8371100 4228600 4142500 11938000 5289800 6647900 1146500 514950 631530 2256300 1229600 1026700 0 0 0 0 0 0 6430 3214 6691 32402;32403;32404;32405;32406;32407;32408 32384;32385;32386;32387;32388 32387 5 EGLVMVEVRK QFADSKGDVGLGLVKEGLVMVEVRKEKQFQ LGLVKEGLVMVEVRKEKQFQKVITEYLNAQ K E G R K E 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 3 0 0 10 1 1158.6431 Q7KZF4 Q7KZF4 858 867 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.052982 47.603 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6431 3214 6692 32409 32389 32389 1 EGLVPVSEDPVAIK PAISPLVSEKQVEVKEGLVPVSEDPVAIKI KEGLVPVSEDPVAIKIAELLENVTLIHKPV K E G I K I 1 0 0 1 0 0 2 1 0 1 1 1 0 0 2 1 0 0 0 3 0 0 14 0 1451.7872 Q14694;J3KT19 Q14694 382 395 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 2 0.00078971 60.434 By MS/MS By matching 2 1 5.1825 5.0778 129.96 3 Median 2.267 2.4247 173.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.1825 5.0778 NaN 1 0 Median 8313800 2360700 5953100 7849100 2293200 5556000 0 0 0 0 0 0 0 0 0 0 0 0 464700 67573 397130 6432 2894 6693 32410;32411;32412 32390;32391 32390 2 EGLYQYK YLELCVDLRKSHLAKEGLYQYKNICQQVNI LRKSHLAKEGLYQYKNICQQVNIKSLEDVV K E G Y K N 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 2 0 0 0 7 0 899.43888 Q14152 Q14152 69 75 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.050853 39.761 By matching By MS/MS 1 2 1.3162 1.1669 9.5157 3 Median 1.0944 1.0519 NaN 1 0 Median 1.3795 1.2184 6.1025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12079000 5289300 6789400 4594200 2375600 2218600 7484500 2913700 4570800 0 0 0 0 0 0 0 0 0 0 0 0 6433 2860 6694 32413;32414;32415 32392 32392 1 EGMAALQSDPWQQELYR MLCDTWCIEAAARIREGMAALQSDPWQQEL MAALQSDPWQQELYRNFKSISKALVERGGV R E G Y R N 2 1 0 1 0 3 2 1 0 0 2 0 1 0 1 1 0 1 1 0 0 0 17 0 2020.9313 P49748;G3V1M7 P49748 616 632 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.022279 37.426 By MS/MS 1 0.62123 0.6159 NaN 1 Median 0.62123 0.6159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3160300 1992800 1167400 3160300 1992800 1167400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6434 2394 6695 32416 32393 32393 1 EGMFNNANVLFK RTHFTHSQFIVVSLKEGMFNNANVLFKTKF SLKEGMFNNANVLFKTKFVDGVSTVARFTQ K E G F K T 1 0 3 0 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 12 0 1382.6653 O95347 O95347 1147 1158 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00062251 66.27 By MS/MS By MS/MS By matching 1 1 1 1.1836 1.2141 13.085 3 Median 1.3063 1.2733 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1205 1.2141 NaN 1 0 Median 1.1836 0.99497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11157000 4804700 6352300 5326700 2250900 3075800 0 0 0 5128100 2247200 2880900 702270 306640 395630 0 0 0 0 0 0 6435 1766 6696 32417;32418;32419 32394;32395;32396 32396 3 EGMNIVEAMER TEWLDGKHVVFGKVKEGMNIVEAMERFGSR GKVKEGMNIVEAMERFGSRNGKTSKKITIA K E G E R F 1 1 1 0 0 0 3 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 11 0 1277.5744 P62937 P62937 134 144 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 8.6493E-05 150.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 8 7 1 1 1.1207 1.0107 8.2693 26 Median 1.0598 0.98624 5.3585 4 0 Median 1.2346 1.0237 3.586 6 0 Median 1.0607 1.0331 11.393 8 0 Plateau 1.2119 0.98132 10.322 6 0 Median 1.0413 1.1019 NaN 1 0 Median 1.2473 1.0348 NaN 1 0 Median 1583600000 739060000 844580000 646100000 310550000 335550000 142230000 61305000 80926000 767130000 356310000 410830000 22542000 8241700 14300000 5497000 2583900 2913100 130020 66246 63777 6436 2611 6697;6698;6699 32420;32421;32422;32423;32424;32425;32426;32427;32428;32429;32430;32431;32432;32433;32434;32435;32436;32437;32438;32439;32440;32441;32442;32443;32444;32445;32446 32397;32398;32399;32400;32401;32402;32403;32404;32405;32406;32407;32408;32409;32410;32411;32412;32413;32414;32415;32416;32417;32418;32419;32420;32421;32422;32423;32424;32425;32426;32427;32428;32429;32430;32431;32432;32433;32434;32435;32436;32437;32438;32439;32440;32441;32442;32443;32444;32445;32446;32447;32448 32434 1271;1272 52 EGMQLISEKPETEAVVK AELASNKEWLDKIEKEGMQLISEKPETEAV MQLISEKPETEAVVKEKLTGLHKMWEVLES K E G V K E 1 0 0 0 0 1 4 1 0 1 1 2 1 0 1 1 1 0 0 2 0 0 17 1 1886.9659 Q01082;A0A087WUZ3 Q01082 1336 1352 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.9959E-12 136.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 5 4 3 2 1 0.93486 0.9579 21.437 17 Median 1.1862 1.1122 19.841 3 0 Plateau 1.1046 1.0557 15.362 5 0 Median 0.72471 0.84494 16.369 4 0 Median 0.90121 0.85395 14.427 3 0 Median 0.65502 0.72263 46.359 2 0 Median NaN NaN NaN 0 0 Median 406120000 210790000 195330000 57074000 28104000 28969000 88904000 36896000 52007000 226940000 126620000 100320000 18042000 9391100 8650900 14831000 9618800 5212100 329050 154800 174250 6437 2681 6700;6701 32447;32448;32449;32450;32451;32452;32453;32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464 32449;32450;32451;32452;32453;32454;32455;32456;32457;32458;32459;32460;32461;32462;32463;32464;32465 32455 1366 17 EGMTAFVEK EKKLFYSTFATDDRKEGMTAFVEKRKANFK ATDDRKEGMTAFVEKRKANFKDQ_______ K E G E K R 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 9 0 1010.4743 P30084 P30084 274 282 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.0019312 76.064 By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1.0259 0.96103 43.304 6 Median 1.0808 1.0001 NaN 1 0 Median 1.4863 1.2442 NaN 1 0 Median 0.97384 0.92349 NaN 1 0 Median 0.86106 0.75476 41.632 2 0 Median NaN NaN NaN 0 0 Median 0.47146 0.39668 NaN 1 0 Median 47679000 22766000 24913000 29785000 13907000 15878000 9938700 4224200 5714500 4120100 2148600 1971500 2478800 1316900 1162000 0 0 0 1356200 1169500 186710 6438 2186 6702 32465;32466;32467;32468;32469;32470 32466;32467;32468;32469 32468 4 EGMTAFVEKR EKKLFYSTFATDDRKEGMTAFVEKRKANFK TDDRKEGMTAFVEKRKANFKDQ________ K E G K R K 1 1 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 10 1 1166.5754 P30084 P30084 274 283 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.00054112 88.177 By MS/MS By MS/MS 1 1 1.0397 1.024 14.401 2 Median 1.084 1.1337 NaN 1 0 Median 0.99722 0.92482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14697000 6713000 7984300 8827500 4096600 4730800 5869900 2616400 3253500 0 0 0 0 0 0 0 0 0 0 0 0 6439 2186 6703 32471;32472 32470;32471;32472 32472 3 EGNASGVSLLEALDTILPPTRPTDK SPNMPWFKGWKVERKEGNASGVSLLEALDT EALDTILPPTRPTDKPLRLPLQDVYKIGGI K E G D K P 2 1 1 2 0 0 2 2 0 1 4 1 0 0 3 2 3 0 0 1 0 0 25 1 2593.3599 A0A2U3TZH3;Q05639 A0A2U3TZH3 220 244 EEF1A2 Elongation factor 1-alpha 2 yes no 3 0.037624 11.853 By matching By MS/MS By matching 1 1 1 0.72222 0.70666 21.004 3 Median NaN NaN NaN 0 0 Median 0.72222 0.70666 NaN 1 0 Median 0.69744 0.70554 NaN 1 0 Median 1.0826 1.0159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3417200 1974500 1442600 0 0 0 757860 439710 318150 2331700 1386900 944770 327610 147890 179730 0 0 0 0 0 0 6440 404 6704 32473;32474;32475 32473 32473 1 EGNASGVSLLEALDTILPPTRPTDKPLR SPNMPWFKGWKVERKEGNASGVSLLEALDT DTILPPTRPTDKPLRLPLQDVYKIGGIGTV K E G L R L 2 2 1 2 0 0 2 2 0 1 5 1 0 0 4 2 3 0 0 1 0 0 28 2 2959.5978 A0A2U3TZH3;Q05639 A0A2U3TZH3 220 247 EEF1A2 Elongation factor 1-alpha 2 yes no 4 0.042461 11.105 By MS/MS By matching 3 1 0.91281 0.98166 36.079 4 Median NaN NaN NaN 0 0 Median 1.0167 0.9829 13.46 3 0 Median 0.50193 0.53362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18671000 9300200 9370500 0 0 0 18401000 9122200 9278400 270060 178000 92059 0 0 0 0 0 0 0 0 0 6441 404 6705 32476;32477;32478;32479 32474 32474 1 EGNDLYHEMIESGVINLK HGGYSVFAGVGERTREGNDLYHEMIESGVI DLYHEMIESGVINLKDATSKVALVYGQMNE R E G L K D 0 0 2 1 0 0 3 2 1 2 2 1 1 0 0 1 0 0 1 1 0 0 18 0 2059.9885 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 242 259 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 3 3.3359E-06 51.193 By MS/MS By MS/MS 1 2 1.196 1.0133 3.9872 3 Median 1.0288 0.95782 NaN 1 0 Median 1.1979 1.0239 1.4718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25777000 12062000 13715000 9823800 5105300 4718500 15953000 6957100 8996300 0 0 0 0 0 0 0 0 0 0 0 0 6442 1872 6706 32480;32481;32482 32475;32476;32477;32478 32477 4 EGNFDIVSGTR SHHPKFIPEFIRKQKEGNFDIVSGTRYKGN RKQKEGNFDIVSGTRYKGNGGVYGWDLKRK K E G T R Y 0 1 1 1 0 0 1 2 0 1 0 0 0 1 0 1 1 0 0 1 0 0 11 0 1193.5677 Q5QPK2;H0Y368;O60762 Q5QPK2 137 147 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2 0.00011265 125.48 By MS/MS By MS/MS By MS/MS 1 1 1 1.1545 1.0963 19.737 3 Median 1.1545 1.0963 NaN 1 0 Median 1.3162 1.1129 NaN 1 0 Median 0.81811 0.78495 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28663000 12915000 15748000 17230000 8088800 9141300 5320500 2182200 3138200 6112600 2644200 3468400 0 0 0 0 0 0 0 0 0 6443 1142 6707 32483;32484;32485 32479;32480;32481;32482;32483 32480 5 EGNGTVMGAELR ATYEDFVEGLRVFDKEGNGTVMGAELRHVL FDKEGNGTVMGAELRHVLATLGEKMKEEEV K E G L R H 1 1 1 0 0 0 2 3 0 0 1 0 1 0 0 0 1 0 0 1 0 0 12 0 1232.5819 P05976;P08590 P05976 142 153 MYL1;MYL3 Myosin light chain 1/3, skeletal muscle isoform;Myosin light chain 3 yes no 2 0.0042563 65.5 By MS/MS By MS/MS 1 1 0.92148 0.83923 28.359 2 Median 0.70263 0.68674 NaN 1 1 Median 1.2085 1.0256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8147900 3508000 4639900 2044600 922480 1122100 6103300 2585500 3517800 0 0 0 0 0 0 0 0 0 0 0 0 6444 1870 6708 32486;32487 32484;32485 32485 2 EGNVPNIIIAGPPGTGK VGNEDTVSRLEVFAREGNVPNIIIAGPPGT NVPNIIIAGPPGTGKTTSILCLARALLGPA R E G G K T 1 0 2 0 0 0 1 4 0 3 0 1 0 0 3 0 1 0 0 1 0 0 17 0 1632.8835 P35250 P35250 66 82 RFC2 Replication factor C subunit 2 yes yes 2 1.4183E-05 79.492 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 0.69055 0.61805 16.126 6 Median 0.60853 0.56262 NaN 1 0 Median 0.78362 0.6758 NaN 1 0 Median 0.56553 0.56364 0.39937 2 0 Median NaN NaN NaN 0 0 Median 0.81342 0.80624 NaN 1 0 Median 0.902 0.75077 NaN 1 0 Median 47313000 28677000 18636000 14987000 9228600 5758800 1951000 984300 966730 26838000 16559000 10279000 0 0 0 3051700 1654400 1397300 484630 250280 234350 6445 2238 6709 32488;32489;32490;32491;32492;32493 32486;32487;32488;32489;32490;32491;32492 32490 7 EGPAVVGQFIQDVK SIAKCVAALTRACPKEGPAVVGQFIQDVKN KEGPAVVGQFIQDVKNSRSTDSIRLLALLS K E G V K N 1 0 0 1 0 2 1 2 0 1 0 1 0 1 1 0 0 0 0 3 0 0 14 0 1485.7827 Q86VP6;A0A0C4DGH5 Q86VP6 813 826 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 9.5711E-07 94.767 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 1 1 1.0546 0.97454 32.547 6 Median 0.75694 0.73221 4.9834 2 2 Median NaN NaN NaN 0 0 Median 0.99021 1.0554 NaN 1 0 Median 1.1231 0.94164 NaN 1 0 Median 1.7127 1.771 NaN 1 0 Median 1.21 1.0086 NaN 1 0 Median 51720000 23792000 27928000 24301000 12875000 11426000 0 0 0 21983000 9108400 12875000 1146100 530440 615660 3526200 879030 2647200 763800 399510 364290 6446 3288 6710 32494;32495;32496;32497;32498;32499;32500;32501 32493;32494;32495;32496;32497;32498;32499;32500 32498 8 EGPDLDRPGSDR GPRCGSSEDLHDSVREGPDLDRPGSDRQER SVREGPDLDRPGSDRQERERARGDSEALDE R E G D R Q 0 2 0 3 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 12 1 1312.6008 Q7Z4V5;A0A087WZ99 Q7Z4V5 643 654 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2;3 0.00013809 78.903 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 8 1 0.80495 0.73711 16.948 12 Median 0.46245 0.5138 NaN 1 0 Median 0.61657 0.59442 NaN 1 0 Median 0.66141 0.76425 NaN 1 0 Median 0.82597 0.73711 9.3238 8 0 Median 0.89492 0.97235 NaN 1 0 Median NaN NaN NaN 0 0 Median 44200000 24325000 19875000 1510000 979860 530190 4389000 2590600 1798500 13275000 7777800 5496800 19965000 10422000 9543400 5061700 2555200 2506500 0 0 0 6447 3248 6711 32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512;32513 32501;32502;32503;32504;32505;32506;32507;32508;32509;32510;32511;32512;32513;32514;32515 32510 15 EGPEGFAR PIGPPPAGFRDILLREGPEGFARAVRNHPG FRDILLREGPEGFARAVRNHPGLLLMDTTF R E G A R A 1 1 0 0 0 0 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 8 0 861.39808 P11498;A0A494C016 P11498 548 555 PC Pyruvate carboxylase, mitochondrial yes no 2 0.026327 71.296 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6448 1967 6712 32514 32516 32516 1 EGPESRPEGAAVAATPTLPR CLVSMSSRAVVHGPREGPESRPEGAAVAAT RPEGAAVAATPTLPRVEERRDGKDSASLFV R E G P R V 4 2 0 0 0 0 3 2 0 0 1 0 0 0 4 1 2 0 0 1 0 0 20 1 2005.0229 A0A087X1K6;Q9Y2Y9 A0A087X1K6 29 48 KLF13 Krueppel-like factor 13 yes no 3 0.0040859 25.207 By MS/MS 1 0.80477 0.83998 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80477 0.83998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4663200 2802600 1860600 0 0 0 0 0 0 4663200 2802600 1860600 0 0 0 0 0 0 0 0 0 6449 121 6713 32515 32517 32517 1 EGPFYPTLR EILTVNGELLFFRQREGPFYPTLRLLHKYP LFFRQREGPFYPTLRLLHKYPFILPHQQVD R E G L R L 0 1 0 0 0 0 1 1 0 0 1 0 0 1 2 0 1 0 1 0 0 0 9 0 1078.5447 Q9ULC4 Q9ULC4 75 83 MCTS1 Malignant T-cell-amplified sequence 1 yes yes 2 0.00085609 94.114 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.8977 0.80881 7.1933 5 Median 0.74012 0.71542 NaN 1 0 Median 0.9312 0.79356 9.0429 2 0 Median 0.84272 0.80881 NaN 1 0 Median 0.99405 0.82769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120820000 65286000 55532000 14607000 8215500 6391400 9178100 4526400 4651700 83160000 45476000 37683000 13873000 7067500 6805900 0 0 0 0 0 0 6450 4323 6714 32516;32517;32518;32519;32520 32518;32519;32520;32521;32522;32523;32524;32525;32526 32521 9 EGPHYTPPIPNYQPPEGR AEAIKRDPNLFPFEKEGPHYTPPIPNYQPP HYTPPIPNYQPPEGRYNDITKVYTQVEFKR K E G G R Y 0 1 1 0 0 1 2 2 1 1 0 0 0 0 6 0 1 0 2 0 0 0 18 0 2047.9752 Q9NQ50 Q9NQ50 174 191 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 3 3.8143E-12 87.429 By MS/MS By MS/MS 1 1 0.42316 0.40199 0.12541 2 Median 0.42407 0.40164 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.42224 0.40235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11761000 8447200 3313800 8325900 5872700 2453200 0 0 0 3435100 2574500 860610 0 0 0 0 0 0 0 0 0 6451 4060 6715 32521;32522 32527;32528 32527 2 EGPMFEAMIMNR NLLALIHRMIEFVVREGPMFEAMIMNREIN VVREGPMFEAMIMNREINNPMFRFLFENQT R E G N R E 1 1 1 0 0 0 2 1 0 1 0 0 3 1 1 0 0 0 0 0 0 0 12 0 1424.6251 O15042;E7ET15 O15042 441 452 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.00051621 76.465 By MS/MS By MS/MS 2 2 0.80595 0.86066 6.1948 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75914 0.81293 8.5037 2 0 Median NaN NaN NaN 0 0 Median 0.80537 0.84792 5.0053 2 0 Median NaN NaN NaN 0 0 Median 11422000 5982100 5439900 0 0 0 0 0 0 4158300 2181600 1976700 0 0 0 7263600 3800500 3463200 0 0 0 6452 1515 6716 32523;32524;32525;32526 32529;32530;32531;32532;32533 32533 5 EGPPFISEAAVR ______________________________ AKREGPPFISEAAVRGNAAVLDYCRTSVSA R E G V R G 2 1 0 0 0 0 2 1 0 1 0 0 0 1 2 1 0 0 0 1 0 0 12 0 1271.651 Q9BV81 Q9BV81 9 20 EMC6 ER membrane protein complex subunit 6 yes yes 2 0.0041475 50.284 By MS/MS By MS/MS 1 1 0.71184 0.69392 NaN 1 Median 0.71184 0.69392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4289600 2556700 1732900 4289600 2556700 1732900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6453 3847 6717 32527;32528 32534;32535;32536 32534 3 EGPSLGPPPVASALSR GREPEARPKRELREREGPSLGPPPVASALS GPSLGPPPVASALSRADREKAKVEETKRKE R E G S R A 2 1 0 0 0 0 1 2 0 0 2 0 0 0 4 3 0 0 0 1 0 0 16 0 1533.8151 O75150;H3BP71 O75150 618 633 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 5.9032E-05 78.324 By MS/MS By MS/MS 1 1 0.55806 0.57853 6.4141 2 Median 0.56562 0.55288 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55061 0.60537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17498000 11222000 6275900 2771500 1678200 1093300 0 0 0 14726000 9543600 5182600 0 0 0 0 0 0 0 0 0 6454 1648 6718 32529;32530 32537;32538 32538 2 EGPVLATSSGAGVFK ITEAGTQPQKVSQVKEGPVLATSSGAGVFK EGPVLATSSGAGVFKMGRFQVSVAADGAQK K E G F K M 2 0 0 0 0 0 1 3 0 0 1 1 0 1 1 2 1 0 0 2 0 0 15 0 1418.7405 F5GWT4;Q9H4A3 F5GWT4 1594 1608 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 0.00017991 75.695 By MS/MS By matching 1 2 0.95686 0.9267 32.034 3 Median 0.95686 0.9267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1184 0.99106 44.97 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10352000 5477200 4875200 9477700 5142700 4335100 0 0 0 0 0 0 874590 334490 540100 0 0 0 0 0 0 6455 1001 6719 32531;32532;32533 32539;32540 32539 2 EGPYDVVVLPGGNLGAQNLSESAAVK DVVICPDASLEDAKKEGPYDVVVLPGGNLG GNLGAQNLSESAAVKEILKEQENRKGLIAA K E G V K E 3 0 2 1 0 1 2 4 0 0 3 1 0 0 2 2 0 0 1 4 0 0 26 0 2583.318 Q99497;K7EN27 Q99497 64 89 PARK7 Protein deglycase DJ-1 yes no 2;3 3.1211E-31 98.7 By MS/MS By MS/MS 2 1 0.81449 0.76012 3.9861 3 Median 0.79735 0.74021 3.7535 2 0 Median 0.93175 0.77934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78335000 41632000 36704000 66908000 35846000 31063000 11427000 5786000 5641300 0 0 0 0 0 0 0 0 0 0 0 0 6456 3749 6720 32534;32535;32536 32541;32542;32543;32544;32545;32546;32547 32543 7 EGPYSISVLYGDEEVPR DNADGTQTVNYVPSREGPYSISVLYGDEEV PYSISVLYGDEEVPRSPFKVKVLPTHDASK R E G P R S 0 1 0 1 0 0 3 2 0 1 1 0 0 0 2 2 0 0 2 2 0 0 17 0 1908.9105 P21333;Q60FE5;A0A087WWY3 P21333 1516 1532 FLNA Filamin-A no no 2;3 7.8864E-15 130.1 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 1 1 1 0.78589 0.78144 21.873 10 Median 0.84778 0.8122 8.4484 4 0 Median 0.74173 0.634 6.0959 3 0 Median 0.75837 0.82672 NaN 1 0 Median 0.72834 0.63911 NaN 1 0 Median 1.1778 1.2316 NaN 1 0 Median NaN NaN NaN 0 0 Median 134300000 72084000 62215000 108670000 57454000 51216000 11085000 6399500 4685400 12254000 7063900 5190500 574530 348760 225770 1714100 817620 896480 0 0 0 6457 2088;3120 6721 32537;32538;32539;32540;32541;32542;32543;32544;32545;32546 32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561;32562;32563;32564;32565 32555 18 EGQEDQGLTK IRITLSKHQNVQLPREGQEDQGLTKDYGNS VQLPREGQEDQGLTKDYGNSPLHRFKKPGS R E G T K D 0 0 0 1 0 2 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1103.5095 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;A0A087WUW5;O95758 A0A0U1RRM4 476 485 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 2 0.0037749 55.549 By matching By MS/MS By matching By MS/MS By matching By matching 1 2 4 3 3 2 1.0292 0.97548 12.07 15 Median 1.2572 1.2388 NaN 1 0 Median 1.1892 1.0341 9.253 2 0 Median 0.96987 0.97656 8.7841 4 0 Median 1.1787 1.0187 10.759 3 0 Plateau 1.0226 0.97548 6.644 3 0 Median 0.99898 0.83502 16.004 2 0 Median 24743000 12074000 12670000 798790 374890 423900 2370900 1040500 1330400 7506300 3816800 3689500 1780700 768660 1012100 11674000 5730000 5944300 612170 342720 269450 6458 312;1791 6722 32547;32548;32549;32550;32551;32552;32553;32554;32555;32556;32557;32558;32559;32560;32561 32566;32567;32568;32569;32570 32566 5 EGQEDQGLTKDYGNSPLHR IRITLSKHQNVQLPREGQEDQGLTKDYGNS DQGLTKDYGNSPLHRFKKPGSKNFQNIFPP R E G H R F 0 1 1 2 0 2 2 3 1 0 2 1 0 0 1 1 1 0 1 0 0 0 19 1 2142.993 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;A0A087WUW5 A0A0U1RRM4 476 494 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3;4 2.7561E-08 77.506 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.88716 0.89063 11.385 8 Median 0.99299 0.99886 13.741 2 0 Median NaN NaN NaN 0 0 Median 0.74422 0.82686 8.8744 2 0 Median NaN NaN NaN 0 0 Median 0.87006 0.89063 0.80086 2 0 Median 1.0382 0.93787 15.956 2 0 Median 43635000 20859000 22776000 8863500 3460500 5403000 0 0 0 2971600 1617600 1354100 0 0 0 22996000 11754000 11242000 8803500 4026600 4776900 6459 312 6723 32562;32563;32564;32565;32566;32567;32568;32569 32571;32572;32573;32574;32575 32574 5 EGQEEVLKEVVESEGER DGDPIVDPEKEKEPKEGQEEVLKEVVESEG QEEVLKEVVESEGERKTKVERDIGEGNLST K E G E R K 0 1 0 0 0 1 7 2 0 0 1 1 0 0 0 1 0 0 0 3 0 0 17 1 1944.9276 Q8TAQ2;F8VXC8 Q8TAQ2 829 845 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 2.6823E-11 98.531 By MS/MS 2 0.9108 1.0323 26.232 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9108 1.0323 26.232 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26972000 13858000 13114000 0 0 0 0 0 0 26972000 13858000 13114000 0 0 0 0 0 0 0 0 0 6460 3455 6724 32570;32571 32576;32577;32578 32578 3 EGQEEVLKEVVESEGERK DGDPIVDPEKEKEPKEGQEEVLKEVVESEG EEVLKEVVESEGERKTKVERDIGEGNLSTA K E G R K T 0 1 0 0 0 1 7 2 0 0 1 2 0 0 0 1 0 0 0 3 0 0 18 2 2073.0226 Q8TAQ2;F8VXC8 Q8TAQ2 829 846 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3;4 2.1116E-14 117.3 By MS/MS 2 0.81054 0.92359 7.991 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81054 0.92359 7.991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71339000 39902000 31437000 0 0 0 0 0 0 71339000 39902000 31437000 0 0 0 0 0 0 0 0 0 6461 3455 6725 32572;32573 32579;32580;32581;32582 32580 4 EGQFKDIITK NAIITMMNHPTDAWKEGQFKDIITKVANVE TDAWKEGQFKDIITKVANVELYYRAIQFYL K E G T K V 0 0 0 1 0 1 1 1 0 2 0 2 0 1 0 0 1 0 0 0 0 0 10 1 1177.6343 A0A087WVQ6;Q00610;J3KS13;P53675;A0A087WV74;A0A087WXH4 A0A087WVQ6 1392 1401 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.0020004 89.827 By MS/MS By matching By matching 2 1 1 1.117 1.1441 11.327 3 Median 1.117 1.0567 NaN 1 0 Median 1.361 1.3213 NaN 1 0 Median 0.99098 1.1441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32019000 15100000 16919000 24958000 11652000 13306000 1817700 709040 1108700 5243900 2739400 2504600 0 0 0 0 0 0 0 0 0 6462 44 6726 32574;32575;32576;32577 32583;32584;32585 32584 3 EGQGEGETQEAAAATAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAT EGETQEAAAATAAARRQEQTLRDATMEVQR R E G A R R 7 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 19 0 1816.8187 P58107;A0A075B730 P58107 3681 3699 EPPK1 Epiplakin yes no 2;3 2.2181E-115 269.78 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 1.2228 1.0972 15.217 12 Median 1.191 1.1632 11.372 4 0 Median 1.2936 1.0686 11.096 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2364 1.2878 21.372 2 0 Median 1.15 0.94586 6.5953 2 0 Median 152250000 66728000 85527000 51209000 23037000 28171000 84714000 36390000 48324000 0 0 0 0 0 0 11384000 4930900 6453500 4948400 2370600 2577800 6463 2520 6727 32578;32579;32580;32581;32582;32583;32584;32585;32586;32587;32588;32589 32586;32587;32588;32589;32590;32591;32592;32593;32594;32595;32596;32597;32598 32593 12 EGQGLGKHEQGLSTALSVEK GGTVAHKIMQKYGFREGQGLGKHEQGLSTA GKHEQGLSTALSVEKTSKRGGKIIVGDATE R E G E K T 1 0 0 0 0 2 3 4 1 0 3 2 0 0 0 2 1 0 0 1 0 0 20 1 2067.0596 Q96I25;H0Y6J6;Q5W012 Q96I25 250 269 RBM17 Splicing factor 45 yes no 3 2.5308E-07 54.008 By MS/MS 1 0.98109 1.0474 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98109 1.0474 NaN 1 0 Median NaN NaN NaN 0 0 Median 15067000 7302700 7764300 0 0 0 0 0 0 0 0 0 0 0 0 15067000 7302700 7764300 0 0 0 6464 3674 6728 32590 32599;32600 32599 2 EGQWDCSVCLVR SKAPKSGFEGMFTKKEGQWDCSVCLVRNEA TKKEGQWDCSVCLVRNEASATKCIACQNPG K E G V R N 0 1 0 1 2 1 1 1 0 0 1 0 0 0 0 1 0 1 0 2 0 0 12 0 1507.6548 P49792 P49792 1607 1618 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.00034761 81.338 By MS/MS By matching 1 1 1.1455 1.1097 9.0977 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0934 1.1834 NaN 1 0 Median 1.2001 1.0406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4363300 2010700 2352600 0 0 0 0 0 0 4198000 1959900 2238000 165340 50734 114610 0 0 0 0 0 0 6465 2401 6729 32591;32592 32601;32602 32602 2 EGRPSGEAFVELESEDEVK KIQNGAQGIRFIYTREGRPSGEAFVELESE SGEAFVELESEDEVKLALKKDRETMGHRYV R E G V K L 1 1 0 1 0 0 6 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2105.9753 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;D6RDL0 P31943 50 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 6.999E-20 160.65 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 3 0.88839 0.91271 28.207 12 Median NaN NaN NaN 0 0 Median 0.88461 0.80818 NaN 1 0 Median 0.82845 0.88316 35.245 4 0 Median 0.79779 0.73323 16.675 2 0 Median 0.89526 0.91271 1.2665 2 1 Median 1.7241 1.428 25.346 3 0 Plateau 363440000 187570000 175880000 0 0 0 2565600 1285400 1280200 263400000 139860000 123540000 27609000 13752000 13857000 58252000 28519000 29733000 11617000 4151800 7465700 6466 1136 6730 32593;32594;32595;32596;32597;32598;32599;32600;32601;32602;32603;32604 32603;32604;32605;32606;32607;32608;32609;32610;32611;32612;32613;32614;32615;32616;32617;32618;32619 32610 17 EGRPSGEAFVELESEEEVK KIQNGTSGIRFIYTREGRPSGEAFVELESE SGEAFVELESEEEVKLALKKDRETMGHRYV R E G V K L 1 1 0 0 0 0 7 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2119.991 P55795 P55795 50 68 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 3 1.4703E-18 112.74 By MS/MS By MS/MS By matching 1 1 1 0.7364 0.74893 80.783 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7364 0.74893 NaN 1 0 Median 1.0203 0.97791 NaN 1 0 Median 0.18816 0.2153 NaN 1 0 Median NaN NaN NaN 0 0 Median 49898000 29039000 20859000 0 0 0 0 0 0 38175000 21382000 16793000 5561600 2465300 3096400 6161700 5191700 970000 0 0 0 6467 2502 6731 32605;32606;32607 32620;32621;32622;32623 32621 4 EGSALSHVR VVITPPYQVENCKGKEGSALSHVRKIRQSL ENCKGKEGSALSHVRKIRQSLALSPTLECS K E G V R K 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 954.48829 K7ELG9;Q3MHD2 K7ELG9 155 163 LSM12 Protein LSM12 homolog yes no 2 0.04318 32.841 By matching By MS/MS 1 1 0.99481 0.93034 16.054 2 Median 1.1126 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88946 0.8305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 991410 455480 535920 519750 226880 292870 0 0 0 471660 228600 243050 0 0 0 0 0 0 0 0 0 6468 1377 6732 32608;32609 32624 32624 1 EGSALTEGAKEEGGEEVAK GDAAAQPAFTGIKGKEGSALTEGAKEEGGE LTEGAKEEGGEEVAKAVLEQEETAAASRER K E G A K A 3 0 0 0 0 0 6 4 0 0 1 2 0 0 0 1 1 0 0 1 0 0 19 1 1889.8854 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 724 742 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 5.4958E-05 39.385 By MS/MS By MS/MS By matching 1 1 1 0.86591 0.88688 12.928 3 Median 0.84106 0.88688 NaN 1 0 Median 0.86591 0.80647 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0934 1.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9174700 4930800 4243900 3507800 2149900 1357900 4594700 2228400 2366300 0 0 0 1072200 552500 519710 0 0 0 0 0 0 6469 156 6733 32610;32611;32612 32625;32626 32626 2 EGSASTEVLR RDMCLEKDTLGLFLREGSASTEVLRTEAEQ GLFLREGSASTEVLRTEAEQCKNLELKDLL R E G L R T 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1047.5197 O75643;A0A494C1A5 O75643 754 763 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00052398 92.051 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1.0222 1.1241 34.449 5 Median NaN NaN NaN 0 0 Median 1.3638 1.164 NaN 1 0 Median 1.0682 1.1842 7.3624 2 1 Median NaN NaN NaN 0 0 Median 0.96845 1.0173 NaN 1 1 Median 0.65062 0.53487 NaN 1 0 Median 14277000 7095900 7180900 0 0 0 4137800 1938900 2199000 6520200 3286700 3233400 0 0 0 3057100 1437100 1620000 561600 433170 128430 6470 1688 6734 32613;32614;32615;32616;32617;32618;32619 32627;32628;32629;32630;32631;32632 32632 6 EGSGDGGRAELNPWPEYIYTR AGEEKQKEGGKKKNKEGSGDGGRAELNPWP GRAELNPWPEYIYTRLEMYNILKAEHDSIL K E G T R L 1 2 1 1 0 0 3 4 0 1 1 0 0 0 2 1 1 1 2 0 0 0 21 1 2366.0927 P26639;D6RCA5;D6R9F8;D6RDJ6 P26639 37 57 TARS Threonine--tRNA ligase, cytoplasmic yes no 3 0.069526 7.6218 By MS/MS 1 1.2534 1.2851 NaN 1 Median 1.2534 1.2851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2755700 1009500 1746300 2755700 1009500 1746300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6471 2147 6735 32620 32633 32633 1 EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR KLPCVAAKIYRNLYREGSGIGAIDSNLDWS NMLGYTDHQFTELTRLYLTIHSDHEGGNVS R E G T R L 1 1 3 3 0 1 2 4 2 2 3 0 1 2 0 3 4 1 1 0 0 0 34 0 3825.7329 O75390;B4DJV2;A0A0C4DGI3 O75390 223 256 CS Citrate synthase, mitochondrial;Citrate synthase yes no 4 9.7307E-89 182.6 By MS/MS By matching 1 1 0.94787 0.88929 21.341 2 Median NaN NaN NaN 0 0 Median 1.1849 1.0341 NaN 1 0 Median 0.75827 0.76473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9960100 4519400 5440700 0 0 0 7369500 3180500 4188900 2590600 1338800 1251800 0 0 0 0 0 0 0 0 0 6472 594 6736 32621;32622 32634;32635 32634 2 EGSGLFPDLLVR DPERAIQDAILEVLKEGSGLFPDLLVRETE VLKEGSGLFPDLLVRETEAVIHKHRSATYC K E G V R E 0 1 0 1 0 0 1 2 0 0 3 0 0 1 1 1 0 0 0 1 0 0 12 0 1301.698 Q86Y56;H0Y650;E9PGY2 Q86Y56 815 826 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.039613 26.514 By MS/MS By MS/MS By matching 1 1 1 1.1786 1.0211 21.301 3 Median 0.89073 0.87373 NaN 1 0 Median 1.1786 1.0211 NaN 1 0 Median 1.2549 1.3315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7592400 3600500 3991900 2553500 1337500 1216000 4290500 1958100 2332400 748380 304860 443520 0 0 0 0 0 0 0 0 0 6473 3305 6737 32623;32624;32625 32636;32637 32636 2 EGSHSPLDSADVR SRKYQEGPDAERRPREGSHSPLDSADVRVH PREGSHSPLDSADVRVHVPRTSIPRAPSSD R E G V R V 1 1 0 2 0 0 1 1 1 0 1 0 0 0 1 3 0 0 0 1 0 0 13 0 1368.627 A0A0A0MSK4;A0A0A0MRC4;Q86YR5 A0A0A0MSK4 467 479 GPSM1 G-protein-signaling modulator 1 yes no 3 0.052794 13.717 By MS/MS By matching 1 1 0.83779 0.79541 15.636 2 Median 0.71571 0.71216 NaN 1 0 Median 0.98069 0.8884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1353500 702830 650650 938880 511460 427430 414600 191370 223220 0 0 0 0 0 0 0 0 0 0 0 0 6474 157 6738 32626;32627 32638 32638 1 EGSLKDQLALAIGK LNSSELSGLPAGPDREGSLKDQLALAIGKL REGSLKDQLALAIGKLGENMILKRAAWVKV R E G G K L 2 0 0 1 0 1 1 2 0 1 3 2 0 0 0 1 0 0 0 0 0 0 14 1 1441.814 P43897;C9JT21 P43897 179 192 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2;3 0.0012739 74.944 By MS/MS By matching By MS/MS By matching 2 2 2 2 1.2174 1.1842 17.964 8 Median 0.91415 0.89237 19.282 2 0 Median 1.3926 1.2551 0.6229 2 0 Median 1.0312 1.0818 5.1826 2 0 Median 1.5013 1.3182 3.7309 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18081000 9095000 8986000 8152400 4424000 3728400 2619800 1156400 1463400 5308600 2742900 2565700 2000200 771730 1228500 0 0 0 0 0 0 6475 2328 6739 32628;32629;32630;32631;32632;32633;32634;32635 32639;32640;32641;32642;32643 32641 5 EGSQGELTPANSQSR AAVLRNQIHVKSPPREGSQGELTPANSQSR EGSQGELTPANSQSRMSTNM__________ R E G S R M 1 1 1 0 0 2 2 2 0 0 1 0 0 0 1 3 1 0 0 0 0 0 15 0 1559.7176 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070;J3QQX0 C9JFE4 452 466 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.056055 22.533 By MS/MS 1 1.1218 0.97843 NaN 1 Median NaN NaN NaN 0 0 Median 1.1218 0.97843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909850 375840 534010 0 0 0 909850 375840 534010 0 0 0 0 0 0 0 0 0 0 0 0 6476 695 6740 32636 32644 32644 1 EGSRTDDEVVQREEEAIQLDGLNASQIR VDVDGTVEEDLGKSREGSRTDDEVVQREEE EEAIQLDGLNASQIRELREKSEKFAFQAEV R E G I R E 2 3 1 3 0 3 5 2 0 2 2 0 0 0 0 2 1 0 0 2 0 0 28 2 3156.5283 P14625;Q96GW1;A0A1W2PRR1 P14625 40 67 HSP90B1 Endoplasmin yes no 3;4 2.5982E-58 136.53 By MS/MS 3 0.90803 1.1282 15.774 3 Plateau 0.90803 1.1282 15.774 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37730000 17530000 20200000 37730000 17530000 20200000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6477 2006 6741 32637;32638;32639 32645;32646;32647;32648 32648 4 EGSVLDILK PEDCEGPFRPAEILKEGSVLDILKSPGFAS PAEILKEGSVLDILKSPGFASPKIDSVAAQ K E G L K S 0 0 0 1 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 9 0 972.54916 P49790 P49790 605 613 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.05352 30.075 By matching By MS/MS By matching 1 2 2 1.2178 1.0453 11.093 5 Median NaN NaN NaN 0 0 Median 1.1599 1.0041 NaN 1 0 Median 1.0427 1.1384 19.073 2 0 Median 1.233 1.0807 4.7061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6905600 3270400 3635100 0 0 0 613550 248180 365370 5724100 2774700 2949400 567920 247570 320350 0 0 0 0 0 0 6478 2400 6742 32640;32641;32642;32643;32644 32649;32650 32649 2 EGTDSSQGIPQLVSNISACQVIAEAVR ______________________________ VSNISACQVIAEAVRTTLGPRGMDKLIVDG K E G V R T 3 1 1 1 1 3 2 2 0 3 1 0 0 0 1 4 1 0 0 3 0 0 27 0 2828.3974 Q99832;F8WBP8;A0A0D9SG95 Q99832 11 37 CCT7 T-complex protein 1 subunit eta yes no 3 0.067256 5.9033 By MS/MS By matching 1 1 0.89389 0.84472 0.91614 2 Median 0.83819 0.85021 NaN 1 0 Median 0.95329 0.83927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2030300 1026400 1003900 1483000 739470 743570 547270 286980 260290 0 0 0 0 0 0 0 0 0 0 0 0 6479 3771 6743 32645;32646 32651 32651 1 EGTEAWEAAMK AYENVKEVDGLDVSKEGTEAWEAAMKRYDE DVSKEGTEAWEAAMKRYDERIDRVETRITA K E G M K R 3 0 0 0 0 0 3 1 0 0 0 1 1 0 0 0 1 1 0 0 0 0 11 0 1221.5336 Q14204 Q14204 541 551 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00019545 75.378 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1604 1.1602 11.043 6 Median 0.96135 0.95962 NaN 1 0 Median 1.2572 1.0996 11.21 2 0 Median 1.1571 1.2406 NaN 1 1 Median 1.2754 1.1927 7.5448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28000000 13210000 14790000 6810100 3444900 3365200 10062000 4415500 5646200 7380700 3692400 3688300 3747400 1657000 2090400 0 0 0 0 0 0 6480 2865 6744 32647;32648;32649;32650;32651;32652 32652;32653;32654;32655;32656 32656 5 EGTETFADHREGILK LDTTIMFATAGTLNREGTETFADHREGILK EGTETFADHREGILKTAKVLVEDTKVLVQN R E G L K T 1 1 0 1 0 0 3 2 1 1 1 1 0 1 0 0 2 0 0 0 0 0 15 1 1701.8322 Q9Y490 Q9Y490 2007 2021 TLN1 Talin-1 yes yes 2;3 0.0030824 30.956 By MS/MS By matching 2 1 0.87034 1.0383 14.266 3 Median 0.91487 0.92139 17.663 2 0 Median NaN NaN NaN 0 0 Median 0.87034 1.0383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19248000 9684300 9563300 16390000 8123700 8266200 0 0 0 2857700 1560600 1297100 0 0 0 0 0 0 0 0 0 6481 4441 6745 32653;32654;32655 32657;32658;32659 32658 3 EGTGTEMPMIGDR ISPKQDEGVLKVIKREGTGTEMPMIGDRVF KREGTGTEMPMIGDRVFVHYTGWLLDGTKF R E G D R V 0 1 0 1 0 0 2 3 0 1 0 0 2 0 1 0 2 0 0 0 0 0 13 0 1392.6014 Q02790 Q02790 40 52 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.00021827 80.763 By MS/MS By MS/MS By MS/MS 1 1 1 0.90585 0.89258 9.349 3 Median 0.9279 0.90049 NaN 1 0 Median 0.90585 0.76264 NaN 1 0 Median 0.86868 0.89258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21459000 11044000 10415000 6858900 3217500 3641300 9125100 4836600 4288500 5474800 2990100 2484600 0 0 0 0 0 0 0 0 0 6482 2701 6746 32656;32657;32658 32660;32661;32662;32663 32662 4 EGTIQVQGQALFFR ______________________________ REGTIQVQGQALFFREALPGSGQARFSVLL R E G F R E 1 1 0 0 0 3 1 2 0 1 1 0 0 2 0 0 1 0 0 1 0 0 14 0 1592.8311 Q96IU4;B4DQI4;F8W9U3 Q96IU4 9 22 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 2 1.9785E-07 113.22 By MS/MS By matching By matching 1 1 2 0.83802 0.81862 32.294 4 Median 0.9542 0.90242 NaN 1 0 Median 1.5779 1.3426 NaN 1 0 Median 0.70655 0.68719 10.967 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9221200 4758600 4462600 6876400 3710700 3165700 1175600 398350 777260 1169100 649550 519580 0 0 0 0 0 0 0 0 0 6483 3679 6747 32659;32660;32661;32662 32664;32665 32665 2 EGTVSDHIER LGILLKREGPNFITKEGTVSDHIERVYRRA NFITKEGTVSDHIERVYRRAGSQKLWLAVR K E G E R V 0 1 0 1 0 0 2 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1141.5364 Q93100;I3L213 Q93100 759 768 PHKB Phosphorylase b kinase regulatory subunit beta yes no 2 0.019154 53.327 By MS/MS 1 1.0843 0.94077 NaN 1 Median NaN NaN NaN 0 0 Median 1.0843 0.94077 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1301200 492930 808270 0 0 0 1301200 492930 808270 0 0 0 0 0 0 0 0 0 0 0 0 6484 3579 6748 32663 32666 32666 1 EGVECEVINMR RPVGHCLEAAAVLSKEGVECEVINMRTIRP VLSKEGVECEVINMRTIRPMDMETIEASVM K E G M R T 0 1 1 0 1 0 3 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 11 0 1334.5959 P11177;C9J634 P11177 259 269 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.0004849 68.735 By MS/MS 1 1.3962 1.1689 NaN 1 Median NaN NaN NaN 0 0 Median 1.3962 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3095600 1502800 1592800 0 0 0 3095600 1502800 1592800 0 0 0 0 0 0 0 0 0 0 0 0 6485 1954 6749 32664 32667;32668 32667 2 EGVHGGLINK TVTKTDKTLVLLMGKEGVHGGLINKKCYEM LLMGKEGVHGGLINKKCYEMASHLRRSQY_ K E G N K K 0 0 1 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1022.5509 P07737;K7EJ44 P07737 117 126 PFN1 Profilin-1 yes no 2 6.6989E-05 133.6 By MS/MS By MS/MS By matching 2 2 1 1.0669 0.94472 4.2861 5 Median 1.039 0.96273 1.2555 2 0 Median 1.0749 0.89657 4.3557 2 0 Median NaN NaN NaN 0 0 Median 1.1364 0.94472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36586000 16954000 19632000 10927000 5076900 5849900 25336000 11726000 13611000 0 0 0 323320 151440 171880 0 0 0 0 0 0 6486 1889 6750 32665;32666;32667;32668;32669 32669;32670;32671;32672 32672 4 EGVHGGLINKK TVTKTDKTLVLLMGKEGVHGGLINKKCYEM LMGKEGVHGGLINKKCYEMASHLRRSQY__ K E G K K C 0 0 1 0 0 0 1 3 1 1 1 2 0 0 0 0 0 0 0 1 0 0 11 1 1150.6459 P07737;K7EJ44 P07737 117 127 PFN1 Profilin-1 yes no 2 0.0033425 53.968 By MS/MS By matching By matching By matching 2 1 1 1 1.1281 1.0955 6.8062 5 Median 1.1145 1.0893 7.7623 2 0 Median 1.1405 0.98867 NaN 1 0 Median 1.124 1.1537 NaN 1 0 Median 1.3062 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5211600 2437000 2774700 2232600 1044100 1188500 1716200 794030 922130 1152700 545440 607280 110150 53380 56766 0 0 0 0 0 0 6487 1889 6751 32670;32671;32672;32673;32674 32673;32674 32673 2 EGVIGVTEEQVHHIVK SAREAAASLSLTLQKEGVIGVTEEQVHHIV GVIGVTEEQVHHIVKQALQRYSEDRIGLAD K E G V K Q 0 0 0 0 0 1 3 2 2 2 0 1 0 0 0 0 1 0 0 4 0 0 16 0 1772.9421 Q9UH99 Q9UH99 518 533 SUN2 SUN domain-containing protein 2 yes yes 3 0.015042 31.776 By MS/MS 1 1.006 1.0156 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.006 1.0156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12566000 6654600 5911500 0 0 0 0 0 0 12566000 6654600 5911500 0 0 0 0 0 0 0 0 0 6488 4271 6752 32675 32675 32675 1 EGVKFDESEK ALPEFDGKRFQNVAKEGVKFDESEKTKESR QNVAKEGVKFDESEKTKESREAVEKEFEPL K E G E K T 0 0 0 1 0 0 3 1 0 0 0 2 0 1 0 1 0 0 0 1 0 0 10 1 1166.5455 P14625 P14625 594 603 HSP90B1 Endoplasmin yes yes 2 7.502E-10 175.93 By MS/MS By MS/MS 1 1 1.3003 1.3114 27.755 2 Median 1.0261 1.0777 NaN 1 0 Median 1.6478 1.5957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15743000 6930300 8812800 6995000 3386100 3608900 8748100 3544200 5203900 0 0 0 0 0 0 0 0 0 0 0 0 6489 2006 6753 32676;32677 32676;32677;32678 32677 3 EGVKTENNDHINLK ______________________________ KEGVKTENNDHINLKVAGQDGSVVQFKIKR K E G L K V 0 0 3 1 0 0 2 1 1 1 1 2 0 0 0 0 1 0 0 1 0 0 14 1 1609.806 P61956 P61956 8 21 SUMO2 Small ubiquitin-related modifier 2 yes yes 3;4 0.03384 19.075 By MS/MS By MS/MS By matching 2 2 1 1.0723 1.093 10.571 5 Median 0.93809 0.93686 2.1985 2 0 Median 1.2978 1.1475 2.9042 2 0 Median 1.0723 1.093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32371000 15365000 17006000 21946000 10770000 11176000 6455000 2849100 3605800 3969400 1745500 2223900 0 0 0 0 0 0 0 0 0 6490 2562 6754 32678;32679;32680;32681;32682 32679;32680;32681 32680 3 EGVLIDAMR IGCYTSDSSGKLVFKEGVLIDAMRKGYWII GKLVFKEGVLIDAMRKGYWIILDELNLAPT K E G M R K 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1002.5168 Q9NU22;Q5T795 Q9NU22 1135 1143 MDN1 Midasin yes no 2 0.046568 31.934 By matching By MS/MS 1 1 1.1379 1.0902 4.5535 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99869 1.0557 NaN 1 0 Median 1.2966 1.1259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9153400 4451900 4701500 0 0 0 0 0 0 8691300 4246200 4445100 462080 205700 256380 0 0 0 0 0 0 6491 4112 6755 32683;32684 32682 32682 1 EGVLPLTAASTAPISFGFTR ______________________________ LTAASTAPISFGFTRTSARRRLADSGDGAG K E G T R T 3 1 0 0 0 0 1 2 0 1 2 0 0 2 2 2 3 0 0 1 0 0 20 0 2034.0786 Q92917 Q92917 6 25 GPKOW G patch domain and KOW motifs-containing protein yes yes 2 0.0017847 41.092 By MS/MS By MS/MS 2 1 0.82516 0.87072 7.9184 3 Median 0.86127 0.84089 10.831 2 0 Median NaN NaN NaN 0 0 Median 0.82516 0.87072 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2747000 1508200 1238800 1472700 785580 687090 0 0 0 1274300 722590 551720 0 0 0 0 0 0 0 0 0 6492 3566 6756 32685;32686;32687 32683;32684 32683 2 EGVLTGSPEQK CLPKKGVTSILPVLREGVLTGSPEQKEEAA PVLREGVLTGSPEQKEEAAKALGLVIRLTS R E G Q K E 0 0 0 0 0 1 2 2 0 0 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1143.5772 Q92616 Q92616 2270 2280 GCN1L1 Translational activator GCN1 yes yes 2 0.039759 28.013 By MS/MS 1 0.81207 0.70263 NaN 1 Median NaN NaN NaN 0 0 Median 0.81207 0.70263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 583990 326470 257520 0 0 0 583990 326470 257520 0 0 0 0 0 0 0 0 0 0 0 0 6493 3544 6757 32688 32685;32686 32686 2 EGVLTGSPEQKEEAAK CLPKKGVTSILPVLREGVLTGSPEQKEEAA GVLTGSPEQKEEAAKALGLVIRLTSADALR R E G A K A 2 0 0 0 0 1 4 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 16 1 1671.8315 Q92616 Q92616 2270 2285 GCN1L1 Translational activator GCN1 yes yes 3 7.0472E-07 77.746 By MS/MS By MS/MS By matching 1 2 1 0.84048 0.79079 16.892 4 Median 0.96894 0.95716 NaN 1 0 Median 0.7938 0.7641 19.151 2 1 Median NaN NaN NaN 0 0 Median 0.76859 0.71475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9874600 4827000 5047600 4478100 2223700 2254400 5087900 2464700 2623200 0 0 0 308560 138650 169910 0 0 0 0 0 0 6494 3544 6758 32689;32690;32691;32692 32687;32688;32689;32690 32689 4 EGVLYVGSK EKTKQGVAEAAGKTKEGVLYVGSKTKEGVV AAGKTKEGVLYVGSKTKEGVVHGVATVAEK K E G S K T 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 1 0 0 1 2 0 0 9 0 950.5073 P37840;E7EPV7;D6RA31;Q16143 P37840 35 43 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 2 0.00053218 103.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 5 4 6 5 0.84306 0.79058 179.72 32 Median 1.1529 1.0645 48.317 5 1 Median 0.91919 0.79058 63.619 8 4 Median 1.271 1.3116 146.6 5 3 Median 0.15059 0.12372 288.83 4 1 Median 0.80089 0.8182 249.88 5 2 Median 0.29552 0.25302 230.75 5 2 Median 4536100000 3644000000 892060000 556620000 259770000 296850000 720460000 383650000 336800000 185990000 109900000 76092000 554250000 471080000 83176000 586590000 532370000 54227000 1932100000 1887200000 44915000 6495 2271 6759 32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726 32691;32692;32693;32694;32695;32696;32697;32698;32699;32700;32701;32702;32703;32704;32705;32706;32707;32708;32709;32710;32711;32712;32713;32714;32715;32716;32717;32718;32719;32720;32721;32722;32723;32724;32725;32726;32727;32728;32729;32730;32731;32732;32733;32734;32735;32736;32737;32738;32739;32740;32741;32742;32743 32724 53 EGVQGPLNVSLSEEGK DQIEKLSDKVVASVKEGVQGPLNVSLSEEG GVQGPLNVSLSEEGKSQEQILEILRFIRRE K E G G K S 0 0 1 0 0 1 3 3 0 0 2 1 0 0 1 2 0 0 0 2 0 0 16 0 1641.821 P12270 P12270 1176 1191 TPR Nucleoprotein TPR yes yes 2 1.2828E-11 110.08 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.82162 0.90477 22.011 5 Median NaN NaN NaN 0 0 Median 1.0661 0.93004 NaN 1 1 Median 0.78754 0.85661 7.7364 2 1 Median 1.237 1.1192 NaN 1 0 Median 0.58311 0.61517 NaN 1 0 Median NaN NaN NaN 0 0 Median 37938000 20317000 17621000 0 0 0 4996300 2575600 2420700 27932000 15007000 12925000 2289900 1032600 1257400 2719000 1701300 1017700 0 0 0 6496 1978 6760 32727;32728;32729;32730;32731 32744;32745;32746;32747 32746 4 EGVSAAFAVK NASILNSLYNENLVKEGVSAAFAVKLFKSW ENLVKEGVSAAFAVKLFKSWINEKDINAVA K E G V K L 3 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 2 0 0 10 0 977.5182 Q7L1Q6;C9IZ80;C9JFN4 Q7L1Q6 179 188 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.007266 61.962 By MS/MS By MS/MS 1 1 1.3789 1.2222 10.793 2 Median 1.4309 1.3191 NaN 1 1 Median 1.3288 1.1324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39006000 13719000 25286000 25651000 8640900 17011000 13354000 5078400 8276000 0 0 0 0 0 0 0 0 0 0 0 0 6497 3219 6761 32732;32733 32748;32749 32749 2 EGVVAAAEK ______________________________ GLSKAKEGVVAAAEKTKQGVAEAAGKTKEG K E G E K T 3 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 9 0 872.46035 P37840;E7EPV7;H6UYS7;D6RA31;Q16143;G4Y816 P37840 13 21 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 2 0.00073658 101.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 3 2 6 5 1.0318 0.91209 114.14 28 Median 1.1656 1.0903 24.224 6 0 Linear 1.0369 0.88437 32.06 6 0 Median 1.3171 1.3071 21.154 3 0 Plateau 0.51477 0.40769 159.33 2 1 Median 1.2008 1.2391 186.15 6 1 Median 0.24739 0.20101 170.77 5 0 Median 213690000 98817000 114880000 23102000 10666000 12436000 166560000 76599000 89956000 8598400 3694900 4903600 1992100 1331200 660910 8573200 3246800 5326400 4873100 3278800 1594200 6498 2271 6762 32734;32735;32736;32737;32738;32739;32740;32741;32742;32743;32744;32745;32746;32747;32748;32749;32750;32751;32752;32753;32754;32755;32756;32757;32758;32759;32760;32761 32750;32751;32752;32753;32754;32755;32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768;32769;32770;32771;32772;32773;32774;32775;32776;32777;32778;32779;32780 32768 31 EGVVECSFVK GARFVFSLVDAMNGKEGVVECSFVKSQETE AMNGKEGVVECSFVKSQETECTYFSTPLLL K E G V K S 0 0 0 0 1 0 2 1 0 0 0 1 0 1 0 1 0 0 0 3 0 0 10 0 1152.5485 P40926;G3XAL0 P40926 270 279 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.014003 39.305 By MS/MS 1 1.5593 1.3078 NaN 1 Median NaN NaN NaN 0 0 Median 1.5593 1.3078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21103000 8145600 12957000 0 0 0 21103000 8145600 12957000 0 0 0 0 0 0 0 0 0 0 0 0 6499 2292 6763 32762 32781 32781 1 EGVVGPELHHK DPVRNRRLTVNEAVKEGVVGPELHHKLLSA EAVKEGVVGPELHHKLLSAERAVTGYKDPY K E G H K L 0 0 0 0 0 0 2 2 2 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1200.6251 Q15149;H0YDN1 Q15149 2893 2903 PLEC Plectin yes no 3 0.0014032 46.592 By matching By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1.2305 1.1409 12.599 6 Median 0.88694 0.8803 NaN 1 0 Median 1.318 1.1465 13.827 2 0 Median 1.0342 1.1328 NaN 1 0 Median 1.2719 1.1755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3383 1.1491 NaN 1 0 Median 5173500 2366000 2807400 622880 373510 249370 3114300 1368800 1745500 381000 188990 192010 211020 102370 108640 0 0 0 844290 332370 511920 6500 2933 6764 32763;32764;32765;32766;32767;32768 32782;32783;32784 32782 3 EGVVHGVATVAEK GKTKEGVLYVGSKTKEGVVHGVATVAEKTK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG K E G E K T 2 0 0 0 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 4 0 0 13 0 1294.6881 P37840;E7EPV7;D6RA31 P37840 46 58 SNCA Alpha-synuclein yes no 2;3 3.2014E-150 267.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 13 4 17 12 11 0.069457 0.06237 165.43 38 Median 0.17005 0.16059 26.074 3 1 Median 0.068227 0.059238 125.4 11 7 Median 0.045475 0.043024 293.82 4 3 Median 0.10114 0.087944 170.99 11 11 Median 0.029934 0.030056 177.68 6 5 Median 0.034424 0.028421 193.22 3 2 Median 5267500000 5245500000 22063000 22492000 18786000 3706200 241030000 232300000 8724300 163290000 160820000 2465500 535560000 532940000 2615900 770250000 766590000 3654800 3534900000 3534000000 896060 6501 2271 6765 32769;32770;32771;32772;32773;32774;32775;32776;32777;32778;32779;32780;32781;32782;32783;32784;32785;32786;32787;32788;32789;32790;32791;32792;32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804;32805;32806;32807;32808;32809;32810;32811;32812;32813;32814;32815;32816;32817;32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828 32785;32786;32787;32788;32789;32790;32791;32792;32793;32794;32795;32796;32797;32798;32799;32800;32801;32802;32803;32804;32805;32806;32807;32808;32809;32810;32811;32812;32813;32814;32815;32816;32817;32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828;32829;32830;32831;32832;32833;32834;32835;32836;32837;32838;32839;32840;32841;32842;32843;32844;32845;32846;32847;32848;32849;32850;32851;32852;32853;32854;32855;32856;32857;32858;32859;32860;32861;32862 32849 78 EGWPSSAYGVTK MNKFVEDTKKGVHQKEGWPSSAYGVTKIGV HQKEGWPSSAYGVTKIGVTVLSRIHARKLS K E G T K I 1 0 0 0 0 0 1 2 0 0 0 1 0 0 1 2 1 1 1 1 0 0 12 0 1280.6037 P16152 P16152 187 198 CBR1 Carbonyl reductase [NADPH] 1 yes yes 2 0.00063798 63.073 By MS/MS By matching 1 1 0.91006 0.85026 10.355 2 Median 0.87061 0.79023 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9513 0.91486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29625000 15816000 13809000 27500000 14478000 13022000 0 0 0 2125600 1338400 787140 0 0 0 0 0 0 0 0 0 6502 2025 6766 32829;32830 32863;32864 32864 2 EGYDFHSSSEFEIVK AGRDVSRFLRLYLRKEGYDFHSSSEFEIVK EGYDFHSSSEFEIVKAIKERACYLSINPQK K E G V K A 0 0 0 1 0 0 3 1 1 1 0 1 0 2 0 3 0 0 1 1 0 0 15 0 1772.7893 P61163;R4GMT0;A0A1B0GVS3 P61163 201 215 ACTR1A Alpha-centractin yes no 2;3 0.00026747 70.1 By matching By MS/MS 1 2 1.0162 1.0497 5.6882 3 Median NaN NaN NaN 0 0 Median 1.2883 1.0977 NaN 1 0 Median 0.96214 1.0145 4.8298 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21016000 9645400 11370000 0 0 0 1021900 282840 739100 19994000 9362600 10631000 0 0 0 0 0 0 0 0 0 6503 2547 6767 32831;32832;32833 32865;32866;32867 32867 3 EGYNNPPISGENLIGLSR DAPVDYFYRPETQHREGYNNPPISGENLIG NNPPISGENLIGLSRARRPHNAIFVNFEDE R E G S R A 0 1 3 0 0 0 2 3 0 2 2 0 0 0 2 2 0 0 1 0 0 0 18 0 1928.9592 Q9Y5Q8;Q5T7U1;Q5T7U4;Q5T7U0 Q9Y5Q8 192 209 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 2.4307E-12 94.551 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.5473 0.54543 42.068 5 Median 0.75968 0.76094 NaN 1 0 Median 0.78113 0.69733 NaN 1 0 Median 0.53797 0.53642 2.357 2 2 Median 0.28274 0.26107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33156000 21253000 11903000 2529400 1396400 1133100 337100 191000 146090 30190000 19601000 10590000 99271 65232 34039 0 0 0 0 0 0 6504 4466 6768 32834;32835;32836;32837;32838 32868;32869;32870;32871 32871 4 EGYSGVGLLSR LPGLSHQYWSAPSDKEGYSGVGLLSRQCPL PSDKEGYSGVGLLSRQCPLKVSYGIGDEEH K E G S R Q 0 1 0 0 0 0 1 3 0 0 2 0 0 0 0 2 0 0 1 1 0 0 11 0 1136.5826 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5M0;G3V359;H7C4A8 G3V3M6 126 136 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.00013804 100.48 By MS/MS By MS/MS By MS/MS 2 3 3 1.2154 1.1302 11.897 8 Median 1.3075 1.2703 12.077 2 0 Median NaN NaN NaN 0 0 Median 1.0345 1.0042 9.6357 3 0 Median 1.3063 1.1017 9.397 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71552000 33350000 38202000 15232000 6604800 8627100 0 0 0 41911000 20311000 21600000 14409000 6433800 7975600 0 0 0 0 0 0 6505 1112 6769 32839;32840;32841;32842;32843;32844;32845;32846 32872;32873;32874;32875;32876;32877 32877 6 EHAAPYFQQLR PLYSHRMRILRQGLREHAAPYFQQLRQTTA QGLREHAAPYFQQLRQTTAPRLLQFPELRL R E H L R Q 2 1 0 0 0 2 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1358.6731 Q96L91 Q96L91 1867 1877 EP400 E1A-binding protein p400 yes yes 2;3 4.2418E-05 114.89 By MS/MS By MS/MS 3 2 0.76167 0.80325 18.905 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76342 0.8046 0.77025 3 2 Median 0.67262 0.58517 13.569 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36487000 20568000 15919000 0 0 0 0 0 0 34370000 19423000 14947000 2117000 1145300 971760 0 0 0 0 0 0 6506 3700 6770 32847;32848;32849;32850;32851 32878;32879;32880;32881;32882;32883 32880 5 EHALAQAELLK MKPTEEHPAYTQIAKEHALAQAELLKRQEE QIAKEHALAQAELLKRQEELERKAAELDRR K E H L K R 3 0 0 0 0 1 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1221.6717 O15126;A0A087WXB0;A0A087WZA6;A0A087WTX8 O15126 79 89 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 2;3 0.00059774 76.228 By MS/MS By MS/MS 2 2 1.9425 1.6383 34.674 4 Median 1.5464 1.4734 54.866 2 1 Median 1.9425 1.6383 22 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15491000 5047200 10444000 10699000 3566700 7132300 4792200 1480500 3311800 0 0 0 0 0 0 0 0 0 0 0 0 6507 1522 6771 32852;32853;32854;32855 32884;32885;32886;32887 32884 4 EHALAQAELLKR MKPTEEHPAYTQIAKEHALAQAELLKRQEE IAKEHALAQAELLKRQEELERKAAELDRRE K E H K R Q 3 1 0 0 0 1 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 12 1 1377.7728 O15126;A0A087WXB0;A0A087WZA6;A0A087WTX8 O15126 79 90 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 3 1.0755E-05 147.58 By MS/MS By MS/MS 2 2 1.2793 1.2307 11.78 4 Median 1.0814 1.0944 13.391 2 0 Median 1.3904 1.2752 1.8035 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18808000 7242500 11565000 8323500 3232100 5091300 10484000 4010300 6473800 0 0 0 0 0 0 0 0 0 0 0 0 6508 1522 6772 32856;32857;32858;32859 32888;32889;32890;32891;32892;32893 32888 6 EHALLAYTLGVK VGEFEAGISKNGQTREHALLAYTLGVKQLI QTREHALLAYTLGVKQLIVGVNKMDSTEPP R E H V K Q 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 1 0 1 1 0 0 12 0 1313.7343 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660 P68104 135 146 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2;3 4.232E-66 248.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 11 18 17 9 3 1.1553 1.0709 19.33 77 Median 1.1847 1.0918 14.578 20 1 Median 1.1011 0.95851 13.032 11 0 Median 1.2209 1.2186 7.3136 17 1 Median 1.1091 0.94865 5.6964 17 0 Median 1.4803 1.5096 17.889 9 1 Median 1.1516 0.95145 3.2582 3 0 Median 5964900000 2725300000 3239500000 1101400000 499920000 601450000 328150000 155010000 173140000 1657600000 721330000 936280000 2741700000 1290000000 1451700000 90869000 37605000 53264000 45176000 21501000 23675000 6509 2632;404 6773 32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870;32871;32872;32873;32874;32875;32876;32877;32878;32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889;32890;32891;32892;32893;32894;32895;32896;32897;32898;32899;32900;32901;32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937 32894;32895;32896;32897;32898;32899;32900;32901;32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941;32942;32943;32944;32945;32946;32947;32948;32949;32950;32951;32952;32953;32954;32955;32956;32957;32958;32959;32960;32961;32962;32963;32964;32965;32966;32967;32968;32969;32970;32971;32972;32973;32974;32975;32976;32977;32978;32979;32980;32981;32982;32983;32984;32985;32986;32987;32988;32989;32990;32991;32992;32993;32994;32995;32996;32997;32998;32999;33000;33001;33002;33003;33004;33005;33006;33007;33008;33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019;33020;33021;33022;33023;33024;33025;33026;33027;33028;33029;33030;33031;33032;33033;33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044;33045;33046;33047;33048;33049;33050;33051;33052 32898 158 EHALLAYTLGVKQLIVGVNK VGEFEAGISKNGQTREHALLAYTLGVKQLI AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE R E H N K M 2 0 1 0 0 1 1 2 1 1 4 2 0 0 0 0 1 0 1 3 0 0 20 1 2165.2572 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488 P68104 135 154 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2;3 6.5095E-18 110.66 By MS/MS By MS/MS By MS/MS 2 2 3 0.97457 0.92282 19.576 7 Median NaN NaN NaN 0 0 Median 0.96818 0.91617 0.24594 2 0 Median 1.1831 1.2368 1.8044 2 0 Median 0.98817 0.93859 16.031 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56912000 26698000 30214000 0 0 0 4088900 1966500 2122400 22640000 10227000 12414000 30183000 14505000 15678000 0 0 0 0 0 0 6510 2632;404 6774 32938;32939;32940;32941;32942;32943;32944 33053;33054;33055;33056;33057;33058;33059;33060 33054 8 EHALTSGTIK VKLISSDGHEFIVKREHALTSGTIKAMLSG FIVKREHALTSGTIKAMLSGPGQFAENETN R E H I K A 1 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1055.5611 Q15369;E5RHG8;R4GMY8 Q15369 34 43 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 0.00030451 125.82 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.176 1.063 16.216 5 Median 1.176 1.0745 NaN 1 0 Median 1.2853 1.0601 NaN 1 0 Median 1.0903 1.063 NaN 1 0 Median 1.1674 0.94936 NaN 1 0 Median 1.3695 1.4616 NaN 1 0 Median NaN NaN NaN 0 0 Median 17556000 8016300 9539400 5908400 2722700 3185700 6065900 2672100 3393800 3724600 1792100 1932500 1516800 683060 833780 339960 146340 193620 0 0 0 6511 846 6775 32945;32946;32947;32948;32949 33061;33062;33063;33064;33065;33066;33067;33068 33062 8 EHAPSIIFMDEIDSIGSSR GEGARMVRELFVMAREHAPSIIFMDEIDSI SIIFMDEIDSIGSSRLEGGSGGDSEVQRTM R E H S R L 1 1 0 2 0 0 2 1 1 4 0 0 1 1 1 4 0 0 0 0 0 0 19 0 2102.9943 P62195;J3QSA9;J3QQM1 P62195 240 258 PSMC5 26S protease regulatory subunit 8 yes no 2;3 1.6403E-08 80.238 By MS/MS By MS/MS 2 1 0.93456 0.84096 7.4863 3 Median 0.89248 0.88776 7.6601 2 0 Median 0.93456 0.81175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9384800 4851200 4533700 4617300 2487800 2129500 4767500 2363400 2404100 0 0 0 0 0 0 0 0 0 0 0 0 6512 2572 6776 32950;32951;32952 33069;33070;33071;33072;33073 33072 5 EHASSLASAGLKR QAELTEKESSLIDLKEHASSLASAGLKRDS LKEHASSLASAGLKRDSKLKSLEIAIEQKK K E H K R D 3 1 0 0 0 0 1 1 1 0 2 1 0 0 0 3 0 0 0 0 0 0 13 1 1325.7052 O15083;H7C4G9 O15083 648 660 ERC2 ERC protein 2 yes no 2 0.0078909 54.608 By MS/MS 1 3.793 3.6187 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.793 3.6187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22775000 3973400 18802000 0 0 0 0 0 0 0 0 0 22775000 3973400 18802000 0 0 0 0 0 0 6513 1519 6777 32953 33074 33074 1 EHASSLASSGLK QGDLSEKEASLLDLKEHASSLASSGLKKDS DLKEHASSLASSGLKKDSRLKTLEIALEQK K E H L K K 2 0 0 0 0 0 1 1 1 0 2 1 0 0 0 4 0 0 0 0 0 0 12 0 1185.599 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 680 691 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00061737 67.334 By MS/MS By MS/MS 1 1 1.5534 1.3348 10.973 2 Median NaN NaN NaN 0 0 Median 1.6388 1.4425 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4726 1.2352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2376200 1007100 1369100 0 0 0 1606400 697470 908910 0 0 0 769820 309590 460230 0 0 0 0 0 0 6514 3311 6778 32954;32955 33075;33076;33077 33075 3 EHDPVGQMVNNPK GYQTAFSQLAFAGKKEHDPVGQMVNNPKIH KKEHDPVGQMVNNPKIHLAQSLHKLSTACP K E H P K I 0 0 2 1 0 1 1 1 1 0 0 1 1 0 2 0 0 0 0 2 0 0 13 0 1463.6827 P55060 P55060 913 925 CSE1L Exportin-2 yes yes 2;3 3.8027E-07 131.44 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 0.83556 0.74449 35.043 8 Median 0.85177 0.84034 19.748 2 0 Median 0.83556 0.72051 15.023 4 0 Median 1.6054 1.67 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63442 0.52986 NaN 1 0 Median 28796000 15432000 13365000 5519000 3174400 2344700 21552000 11485000 10067000 1187300 421650 765670 0 0 0 0 0 0 537910 350700 187210 6515 2493 6779 32956;32957;32958;32959;32960;32961;32962;32963 33078;33079;33080;33081;33082;33083;33084;33085;33086;33087;33088 33082 11 EHDQLIEK NFIQNLSLFLCTFLKEHDQLIEKRLNLRET FLCTFLKEHDQLIEKRLNLRETLMEALHYM K E H E K R 0 0 0 1 0 1 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 1010.5033 O14980 O14980 332 339 XPO1 Exportin-1 yes yes 2 0.0026834 126.52 By MS/MS By matching 2 1 1.1201 1.0369 6.017 3 Median NaN NaN NaN 0 0 Median 1.1585 1.0192 8.3922 2 0 Median 0.98294 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4957800 2370000 2587700 0 0 0 4784600 2281400 2503200 173200 88624 84573 0 0 0 0 0 0 0 0 0 6516 1510 6780 32964;32965;32966 33089;33090;33091;33092 33091 4 EHDVKKEDGTFYEFGEDIPEAPER PFKRMNYSDAIVWLKEHDVKKEDGTFYEFG TFYEFGEDIPEAPERLMTDTINEPILLCRF K E H E R L 1 1 0 3 0 0 6 2 1 1 0 2 0 2 2 0 1 0 1 1 0 0 24 2 2836.2828 O43776 O43776 402 425 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 4 2.4025E-06 38.67 By MS/MS 1 1.3056 1.4134 NaN 1 Median 1.3056 1.4134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8472800 3815600 4657100 8472800 3815600 4657100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6517 1589 6781 32967 33093 33093 1 EHDYRDEHLDFIQSHLR LVVCTKCDAVSVLEKEHDYRDEHLDFIQSH DYRDEHLDFIQSHLRRFCLQYGAALIYTSV K E H L R R 0 2 0 3 0 1 2 0 3 1 2 0 0 1 0 1 0 0 1 0 0 0 17 1 2209.0301 O43237;B4E2E0 O43237 243 259 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 4 0.017504 25.558 By MS/MS 1 0.87063 0.94034 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87063 0.94034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3169800 1535800 1634000 0 0 0 0 0 0 3169800 1535800 1634000 0 0 0 0 0 0 0 0 0 6518 1559 6782 32968 33094 33094 0 EHELLEQQK QQEERAKQQGDHSLKEHELLEQQKRAAVLL GDHSLKEHELLEQQKRAAVLLEQERQQEIA K E H Q K R 0 0 0 0 0 2 3 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1152.5775 Q13435;H0YCG1;E9PJ04;E9PJT3 Q13435 174 182 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.002854 84.568 By MS/MS 1 0.84477 0.72333 NaN 1 Median NaN NaN NaN 0 0 Median 0.84477 0.72333 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1069400 526690 542740 0 0 0 1069400 526690 542740 0 0 0 0 0 0 0 0 0 0 0 0 6519 2817 6783 32969 33095 33095 1 EHELLEQQKR QQEERAKQQGDHSLKEHELLEQQKRAAVLL DHSLKEHELLEQQKRAAVLLEQERQQEIAK K E H K R A 0 1 0 0 0 2 3 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1308.6786 Q13435;H0YCG1;E9PJ04;E9PJT3 Q13435 174 183 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 8.8783E-05 81.548 By MS/MS By matching 2 1 1.1876 1.1326 10.742 3 Median NaN NaN NaN 0 0 Median 1.2955 1.2426 13.109 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0146 1.1311 NaN 1 0 Median NaN NaN NaN 0 0 Median 2007200 896810 1110400 0 0 0 1639100 755580 883490 0 0 0 0 0 0 368180 141230 226950 0 0 0 6520 2817 6784 32970;32971;32972 33096;33097 33096 2 EHEVFQR PGVEPGDIVLLLQEKEHEVFQRDGNDLHMT IVLLLQEKEHEVFQRDGNDLHMTYKIGLVE K E H Q R D 0 1 0 0 0 1 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 943.45118 O60884 O60884 256 262 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2 0.015285 71.949 By MS/MS By MS/MS By MS/MS 1 2 1 1.1826 1.0944 13.685 4 Median 1.2545 1.222 NaN 1 0 Median 1.1075 0.97369 0.92498 2 0 Median 1.2719 1.245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3168000 1378500 1789400 439070 194800 244270 1952400 825920 1126500 776510 357810 418700 0 0 0 0 0 0 0 0 0 6521 1637 6785 32973;32974;32975;32976 33098;33099;33100;33101 33101 4 EHEVTLVLR E H L R 0 1 0 0 0 0 2 0 1 0 2 0 0 0 0 0 1 0 0 2 0 0 9 0 1094.6084 REV__Q8TC59 yes yes 2 0.0011922 84.244 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 5 3 1.2881 1.0735 17.553 16 Median 1.235 1.1813 16.626 2 0 Median 1.3566 1.0972 0 2 0 Median 1.0057 1.0054 0 2 0 Median 1.4213 1.0265 0 2 0 Median 1.223 1.2571 21.709 5 0 Median 1.4403 1.1681 27.925 3 0 Median 705160000 329760000 375400000 25433000 11768000 13665000 60152000 24447000 35705000 195510000 97107000 98403000 156600000 62107000 94488000 263470000 132670000 130800000 3996900 1663800 2333100 + 6522 4553 6786 32977;32978;32979;32980;32981;32982;32983;32984;32985;32986;32987;32988;32989;32990;32991;32992 33102;33103;33104;33105;33106;33107;33108 33102 7 EHFAQFGHVR FVRRIPWTAASSQLKEHFAQFGHVRRCILP SSQLKEHFAQFGHVRRCILPFDKETGFHRG K E H V R R 1 1 0 0 0 1 1 1 2 0 0 0 0 2 0 0 0 0 0 1 0 0 10 0 1226.5945 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJW7;H0YJ07;H0YJU7 Q9GZT3 37 46 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2;3 2.2369E-10 173.68 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.3757 1.2527 7.1853 6 Median 1.1872 1.1562 8.9439 2 1 Median 1.5274 1.3021 3.0815 2 0 Median 1.2696 1.2873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5412 1.1988 NaN 1 0 Median 95969000 38957000 57013000 16182000 7111000 9071100 71860000 28663000 43197000 7616000 3054200 4561700 0 0 0 0 0 0 310780 128030 182750 6523 3914 6787 32993;32994;32995;32996;32997;32998;32999;33000 33109;33110;33111;33112;33113;33114;33115;33116;33117;33118;33119;33120;33121;33122 33122 14 EHFQHVAAPYIAK YRDPLYEIVRKHIYREHFQHVAAPYIAKAG YREHFQHVAAPYIAKAGEKSLNGAVPLGSN R E H A K A 3 0 0 0 0 1 1 0 2 1 0 1 0 1 1 0 0 0 1 1 0 0 13 0 1509.7728 Q9H2P0;A0A2R8Y469 Q9H2P0 187 199 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 2.7406E-07 98.902 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 0.88814 0.87673 34.009 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95199 1.0174 14.374 2 0 Median 0.66923 0.55978 47.308 2 1 Median 0.92127 0.94126 18.423 3 0 Median 0.85621 0.72042 NaN 1 0 Median 40462000 19613000 20850000 0 0 0 0 0 0 11477000 5363800 6112800 4474600 2695600 1779000 23146000 10971000 12174000 1365300 582020 783310 6524 3946 6788 33001;33002;33003;33004;33005;33006;33007;33008 33123;33124;33125;33126;33127;33128;33129 33123 7 EHFQSYDLDHMEK ALEDLRLDKPFPELREHFQSYDLDHMEKKD LREHFQSYDLDHMEKKDHSHTPWIVIIAKY R E H E K K 0 0 0 2 0 1 2 0 2 0 1 1 1 1 0 1 0 0 1 0 0 0 13 0 1677.7093 Q13564;H3BMR3;J3QRA5 Q13564 194 206 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 3 0.00035122 56.139 By MS/MS By matching 1 2 1.1968 1.1201 8.0725 3 Median 1.1797 1.1201 NaN 1 0 Median 1.2987 1.1198 11.416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10592000 4702500 5889100 7530400 3196800 4333500 3061300 1505700 1555600 0 0 0 0 0 0 0 0 0 0 0 0 6525 2825 6789 33009;33010;33011 33130;33131 33131 2 EHGAFDAVK TDTESELDLISRLSREHGAFDAVKCTHWAE ISRLSREHGAFDAVKCTHWAEGGKGALALA R E H V K C 2 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 0 972.46649 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 776 784 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 2.6012E-07 166.52 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1916 1.0463 4.5944 5 Median 1.0033 0.99633 NaN 1 0 Median 1.2333 1.0635 2.3046 2 0 Median NaN NaN NaN 0 0 Median 1.302 1.113 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1916 1.0108 NaN 1 0 Median 23207000 10302000 12905000 2339200 1138800 1200400 20319000 8944700 11374000 0 0 0 333260 128270 205000 0 0 0 215900 90589 125310 6526 1968 6790 33012;33013;33014;33015;33016 33132;33133;33134;33135 33134 4 EHGLIFMETSAK SRREVKKEEGEAFAREHGLIFMETSAKTAS FAREHGLIFMETSAKTASNVEEAFINTAKE R E H A K T 1 0 0 0 0 0 2 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 12 0 1361.6649 P61019;H7C125;Q8WUD1;A0A3B3ITL1 P61019 140 151 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 2;3 4.9752E-24 145.99 By MS/MS By MS/MS By matching By matching 6 2 2 1 1.0553 1.0196 20.031 10 Median 1.0214 0.9486 28.085 5 1 Median 1.2295 1.0307 2.6145 2 0 Median 0.99645 1.0358 1.1244 2 0 Median 0.98894 0.8167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77835000 37629000 40206000 55369000 27119000 28250000 16024000 6919000 9104500 5402600 3022400 2380200 1039600 568860 470740 0 0 0 0 0 0 6527 2537;3489 6791 33017;33018;33019;33020;33021;33022;33023;33024;33025;33026;33027 33136;33137;33138;33139;33140;33141;33142;33143 33139 8 EHGQESLSDELQETHPK RVDDSEGSWIPPGEKEHGQESLSDELQETH GQESLSDELQETHPKKPWQKVTVRARELGD K E H P K K 0 0 0 1 0 2 4 1 2 0 2 1 0 0 1 2 1 0 0 0 0 0 17 0 1962.8919 A0A0A0MRR1;Q5VV50;Q5VV52;Q5VV51 A0A0A0MRR1 70 86 ZNF691 Zinc finger protein 691 yes no 3 6.0526E-06 68.576 By MS/MS By matching 2 1 0.83344 0.80029 10.025 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71902 0.73511 12.015 2 0 Median 0.95401 0.80609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11287000 5698900 5588500 0 0 0 0 0 0 9290200 4790900 4499300 1997100 907950 1089200 0 0 0 0 0 0 6528 168 6792 33028;33029;33030 33144;33145 33145 2 EHGVVPQADNATPSER QKDDINKKAFDKFKKEHGVVPQADNATPSE HGVVPQADNATPSERFEGPYTDFTPWTTEE K E H E R F 2 1 1 1 0 1 2 1 1 0 0 0 0 0 2 1 1 0 0 2 0 0 16 0 1705.802 Q99543 Q99543 528 543 DNAJC2 DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed yes yes 3 3.749E-05 63.128 By MS/MS 1 0.84163 0.72239 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84163 0.72239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 878730 458570 420160 0 0 0 0 0 0 0 0 0 878730 458570 420160 0 0 0 0 0 0 6529 3751 6793 33031 33146;33147 33146 2 EHHFEAIALVEK FGNSWAETYRNRFWKEHHFEAIALVEKALQ FWKEHHFEAIALVEKALQAAYGASAPSVTS K E H E K A 2 0 0 0 0 0 3 0 2 1 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1421.7303 H3BLU7;O43488 H3BLU7 222 233 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 3 0.0011171 60.161 By MS/MS 2 1.4814 1.2429 NaN 1 Median NaN NaN NaN 0 0 Median 1.4814 1.2429 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19497000 8613300 10884000 0 0 0 19497000 8613300 10884000 0 0 0 0 0 0 0 0 0 0 0 0 6530 1206 6794 33032;33033 33148;33149 33148 2 EHHFGSSGMTLHER ELFAQHIVTIVHHVKEHHFGSSGMTLHERF KEHHFGSSGMTLHERFTKYLKRGTEQEAAK K E H E R F 0 1 0 0 0 0 2 2 3 0 1 0 1 1 0 2 1 0 0 0 0 0 14 0 1623.7212 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 640 653 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3;4 8.7008E-08 115.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 7 5 4 1.1976 1.1918 21.993 24 Median 1.4843 1.4783 58.279 2 0 Median 1.1539 0.96833 13.352 3 0 Median 1.1392 1.2517 11.584 3 0 Median 1.5206 1.2961 20.894 7 0 Median 1.1908 1.2137 11.583 5 0 Median 1.3415 1.1263 13.659 4 0 Median 56620000 24312000 32308000 3397200 1400600 1996700 14743000 6215600 8527300 5405000 2392900 3012100 5376900 2344500 3032400 21378000 9136800 12241000 6320200 2821500 3498700 6531 439 6795 33034;33035;33036;33037;33038;33039;33040;33041;33042;33043;33044;33045;33046;33047;33048;33049;33050;33051;33052;33053;33054;33055;33056;33057 33150;33151;33152;33153;33154;33155;33156;33157;33158;33159;33160;33161;33162;33163;33164;33165;33166;33167;33168;33169;33170;33171;33172;33173;33174 33164 25 EHIEELLR LKTNHSNIMDDPFIREHIEELLRNIRTQVL MDDPFIREHIEELLRNIRTQVLIKLIKPYT R E H L R N 0 1 0 0 0 0 3 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1037.5506 P61201;B4DIH5;H0YMC2 P61201 345 352 COPS2 COP9 signalosome complex subunit 2 yes no 2 0.0023833 116.54 By matching By MS/MS 1 1 1.0965 1.0909 12.629 2 Median 1.001 0.99773 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.201 1.1928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9615500 4544200 5071300 2083900 985050 1098800 0 0 0 7531700 3559200 3972500 0 0 0 0 0 0 0 0 0 6532 2548 6796 33058;33059 33175 33175 1 EHIEQQIQTYQR QLVAVTQKTAERSYREHIEQQIQTYQRSWL SYREHIEQQIQTYQRSWLKVTDYIAEKNLP R E H Q R S 0 1 0 0 0 4 2 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 12 0 1571.7692 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07 A0A0A0MSB8 582 593 EXOC7 Exocyst complex component 7 yes no 3 0.0043723 51.013 By MS/MS 2 1.2204 1.0206 44.743 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2204 1.0206 44.743 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2132500 915130 1217400 0 0 0 0 0 0 0 0 0 2132500 915130 1217400 0 0 0 0 0 0 6533 179 6797 33060;33061 33176;33177 33177 2 EHIKNPDWR CCEDDIVPHVLPFIKEHIKNPDWRYRDAAV VLPFIKEHIKNPDWRYRDAAVMAFGCILEG K E H W R Y 0 1 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 0 0 9 1 1193.5942 Q14974;J3KTM9 Q14974 373 381 KPNB1 Importin subunit beta-1 yes no 2;3 0.0027061 68.224 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1 1.1236 1.1552 13.3 3 Plateau 1.0434 1.0611 NaN 1 0 Median 1.21 1.2124 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96187 0.92923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12267000 1376500 10890000 3753500 534570 3218900 5276800 683430 4593300 1472600 0 1472600 1062200 158490 903750 469630 0 469630 231890 0 231890 6534 2904 6798 33062;33063;33064;33065;33066;33067;33068;33069;33070 33178;33179;33180;33181;33182;33183;33184;33185 33181 7 EHINSVSAMK CRLIRGWDDLFNKVKEHINSVSAMKLSPYY FNKVKEHINSVSAMKLSPYYKVFEEDALSW K E H M K L 1 0 1 0 0 0 1 0 1 1 0 1 1 0 0 2 0 0 0 1 0 0 10 0 1114.5441 Q14204 Q14204 1499 1508 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0087295 46.129 By matching By MS/MS By MS/MS 1 2 1 1.2715 1.1902 7.1455 4 Median 1.1817 1.1719 NaN 1 0 Median 1.2891 1.1305 9.4613 2 0 Median NaN NaN NaN 0 0 Median 1.3435 1.2465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2634100 1135900 1498100 533030 223770 309260 1520900 670240 850660 0 0 0 580130 241900 338230 0 0 0 0 0 0 6535 2865 6799 33071;33072;33073;33074 33186;33187;33188 33187 3 EHIYDLR YLIRNGSERVVTSAREHIYDLRSLENYHFV ERVVTSAREHIYDLRSLENYHFVDEHGKDQ R E H L R S 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 944.47158 Q14677 Q14677 103 109 CLINT1 Clathrin interactor 1 yes yes 2 0.0096554 83.614 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.227 1.0443 46.616 4 Median 0.50398 0.48993 NaN 1 1 Median 1.1272 0.97544 NaN 1 0 Median 1.3913 1.4632 NaN 1 0 Median 1.3356 1.1181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15686000 7203700 8482500 3254800 2071000 1183800 7181500 3413400 3768100 4386400 1335200 3051200 863390 384080 479310 0 0 0 0 0 0 6536 2888 6800 33075;33076;33077;33078 33189;33190;33191;33192 33190 4 EHLAQKPVFLPR VERYMNSDTTSPELREHLAQKPVFLPRNLR ELREHLAQKPVFLPRNLRRIRKCQRGREQQ R E H P R N 1 1 0 0 0 1 1 0 1 0 2 1 0 1 2 0 0 0 0 1 0 0 12 1 1433.8143 Q96ST3 Q96ST3 1117 1128 SIN3A Paired amphipathic helix protein Sin3a yes yes 2;3 1.0023E-08 172.23 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.88798 0.90124 15.443 7 Median 0.88798 0.90124 NaN 1 0 Median 1.083 1.0133 NaN 1 0 Median 0.65248 0.7398 12.646 2 0 Median 0.92237 0.88843 11.973 2 0 Median 0.96835 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median 58715000 31949000 26766000 3210300 1718000 1492400 5986900 3035900 2951000 35427000 20331000 15096000 11517000 5770600 5746100 2574300 1094000 1480300 0 0 0 6537 3737 6801 33079;33080;33081;33082;33083;33084;33085 33193;33194;33195;33196;33197;33198;33199;33200;33201 33195 9 EHLDENSPLGDLLR YVEEMVNPVALEPEREHLDENSPLGDLLRG REHLDENSPLGDLLRGVLDVPACQIAIRPE R E H L R G 0 1 1 2 0 0 2 1 1 0 4 0 0 0 1 1 0 0 0 0 0 0 14 0 1606.7951 P19174;A0A0D9SEK2 P19174 860 873 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 3 0.00091214 38.787 By MS/MS By matching 2 1 1.0581 1.0631 24.465 3 Median 0.89115 0.89768 23.925 2 0 Median 1.388 1.2191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2331600 891360 1440200 1915700 728600 1187100 415840 162760 253080 0 0 0 0 0 0 0 0 0 0 0 0 6538 2062 6802 33086;33087;33088 33202 33202 1 EHLELFWSR ELAILYSKFKPQKMREHLELFWSRVNIPKV KPQKMREHLELFWSRVNIPKVLRAAEQAHL R E H S R V 0 1 0 0 0 0 2 0 1 0 2 0 0 1 0 1 0 1 0 0 0 0 9 0 1215.6037 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1338 1346 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 1.161E-05 128.69 By MS/MS By MS/MS By matching 3 2 1 1.4029 1.2253 11.858 6 Median 1.3779 1.293 10.886 3 1 Median 1.4465 1.2253 0.55419 2 0 Median 0.88238 0.98495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40139000 17207000 22933000 29764000 12717000 17048000 9830300 4154900 5675400 544680 335120 209560 0 0 0 0 0 0 0 0 0 6539 44 6803 33089;33090;33091;33092;33093;33094 33203;33204;33205;33206;33207;33208;33209;33210 33206 8 EHLELLK VLPWTSISSLKAVAREHLELLKHMHTVGEK SSLKAVAREHLELLKHMHTVGEKVIVDFAG R E H L K H 0 0 0 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 880.50182 F8W6G5;C9JZ40;Q7Z2E3;A0A0A0MRW7 F8W6G5 161 167 APTX Aprataxin yes no 2 0.0043843 100.74 By MS/MS By matching 1 1 1.1756 1.1301 8.6791 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96982 1.0628 NaN 1 0 Median 1.4251 1.2016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3628600 1659900 1968700 0 0 0 0 0 0 2586100 1240500 1345600 1042600 419430 623140 0 0 0 0 0 0 6540 730 6804 33095;33096 33211 33211 1 EHLHIVK AGGVYETTQHFIDIKEHLHIVKRDIDNLVQ TQHFIDIKEHLHIVKRDIDNLVQRNMPSNE K E H V K R 0 0 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 874.50249 P49257 P49257 441 447 LMAN1 Protein ERGIC-53 yes yes 2 0.0023577 107.74 By matching By MS/MS 1 1 1.2412 1.1455 0.81134 2 Median 1.1556 1.1389 NaN 1 0 Median 1.333 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1907600 886250 1021400 349770 180550 169230 1557800 705700 852130 0 0 0 0 0 0 0 0 0 0 0 0 6541 2375 6805 33097;33098 33212 33212 1 EHLLLAR ILVVAANDGPMPQTREHLLLARQIGVEHVV DGPMPQTREHLLLARQIGVEHVVVYVNKAD R E H A R Q 1 1 0 0 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 850.50249 P49411 P49411 163 169 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0024176 124.32 By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1.1062 1.0802 15.207 8 Median 1.1062 1.0627 3.6059 2 0 Median 1.3843 1.2489 7.8918 3 0 Median 1.0665 1.0704 NaN 1 0 Median 0.98625 0.89996 1.184 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44771000 19880000 24891000 15922000 7598800 8323500 18417000 7599000 10818000 4265500 1931400 2334100 6166000 2750900 3415200 0 0 0 0 0 0 6542 2382 6806 33099;33100;33101;33102;33103;33104;33105;33106 33213;33214;33215;33216;33217;33218;33219;33220 33214 8 EHLLQGLLPDVQVPTSVK LAEKIKVNWTPEINKEHLLQGLLPDVQVPT LQGLLPDVQVPTSVKDMRYCQVSFQDDHVS K E H V K D 0 0 0 1 0 2 1 1 1 0 4 1 0 0 2 1 1 0 0 3 0 0 18 0 1972.0993 A6NHR9;J3KTL8 A6NHR9 1102 1119 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0077494 23.562 By MS/MS By matching By matching 1 1 1 0.87739 0.7887 23.519 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61505 0.68557 NaN 1 0 Median 0.87739 0.7887 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2903 1.0848 NaN 1 0 Median 3687600 2221200 1466400 0 0 0 0 0 0 2605100 1600400 1004700 238670 113750 124930 0 0 0 843820 507050 336780 6543 518 6807 33107;33108;33109 33221;33222 33222 2 EHLLQSNIGTGEK QVDAQLQVVRKLEEKEHLLQSNIGTGEKEL EKEHLLQSNIGTGEKELGLRTQALEMNKRK K E H E K E 0 0 1 0 0 1 2 2 1 1 2 1 0 0 0 1 1 0 0 0 0 0 13 0 1424.726 Q5VTR2 Q5VTR2 809 821 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2;3 3.173E-08 124.1 By MS/MS By MS/MS 2 1 1.2465 1.0765 5.2376 3 Median NaN NaN NaN 0 0 Median 1.2813 1.1047 3.6549 2 2 Median NaN NaN NaN 0 0 Median 1.1921 1.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10454000 4316200 6138200 0 0 0 7528400 3092100 4436300 0 0 0 2925900 1224000 1701900 0 0 0 0 0 0 6544 3112 6808 33110;33111;33112 33223;33224;33225;33226 33224 4 EHLLSYLEK QKNQTSKSTTGPFDREHLLSYLEKEALEHK TGPFDREHLLSYLEKEALEHKDREDYVPYT R E H E K E 0 0 0 0 0 0 2 0 1 0 3 1 0 0 0 1 0 0 1 0 0 0 9 0 1130.5972 Q9NYL9 Q9NYL9 67 75 TMOD3 Tropomodulin-3 yes yes 2 0.0032184 66.621 By MS/MS By matching 1 1 3.6284 4.0065 213.26 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85819 0.88686 NaN 1 0 Median NaN NaN NaN 0 0 Median 15.341 18.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 14087000 6547600 7539200 0 0 0 0 0 0 12539000 6459900 6079300 0 0 0 1547500 87635 1459900 0 0 0 6545 4178 6809 33113;33114 33227 33227 1 EHLLTNHLK ELEVIHLIEEHRLVREHLLTNHLKSKEVWK EHRLVREHLLTNHLKSKEVWKALLQEMPLT R E H L K S 0 0 1 0 0 0 1 0 2 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1103.6087 P10155 P10155 256 264 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 0.0056277 57.047 By MS/MS By MS/MS 2 2 1.2791 1.1621 33.221 4 Median 0.86886 0.84766 41.163 2 0 Median 1.4423 1.2577 7.7281 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6595200 2872800 3722500 2567700 1263300 1304400 4027500 1609400 2418100 0 0 0 0 0 0 0 0 0 0 0 0 6546 1934 6810 33115;33116;33117;33118 33228;33229 33229 2 EHLLVSIPLLINHLQAESIVVHTYAAHALER DGIKYIMIFRNQVPKEHLLVSIPLLINHLQ ESIVVHTYAAHALERLFTMRGPNNATLFTA K E H E R L 4 1 1 0 0 1 3 0 4 3 6 0 0 0 1 2 1 0 1 3 0 0 31 0 3485.9147 P55060 P55060 498 528 CSE1L Exportin-2 yes yes 4 1.2173E-14 56.914 By matching By MS/MS 1 1 0.85121 0.80403 26.004 2 Median 0.95685 0.96634 NaN 1 0 Median 0.75723 0.66899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1742300 789200 953150 443420 231050 212370 1298900 558150 740780 0 0 0 0 0 0 0 0 0 0 0 0 6547 2493 6811 33119;33120 33230 33230 1 EHLMLEEELR IEIERLQSLTENLTKEHLMLEEELRNLRLE ENLTKEHLMLEEELRNLRLEYDDLRRGRSE K E H L R N 0 1 0 0 0 0 4 0 1 0 3 0 1 0 0 0 0 0 0 0 0 0 10 0 1297.6336 P15924 P15924 1716 1725 DSP Desmoplakin yes yes 2 0.037438 49.813 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6548 2021 6812 33121 33231 33231 1 EHLRDFLVQIK VTGLFSLNQDIPAFKEHLRDFLVQIKEFAG PAFKEHLRDFLVQIKEFAGEDTSDLFLEER K E H I K E 0 1 0 1 0 1 1 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 11 1 1396.7827 O14980 O14980 1013 1023 XPO1 Exportin-1 yes yes 3 0.002198 43.419 By MS/MS By matching By matching 1 1 1 1.1538 1.3154 36.577 3 Median 1.0917 1.1369 NaN 1 0 Median 2.3794 2.2752 NaN 1 0 Median 1.1538 1.3154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10270000 4645000 5624800 8090400 3910700 4179800 951710 267660 684050 1227700 466650 761020 0 0 0 0 0 0 0 0 0 6549 1510 6813 33122;33123;33124 33232;33233 33232 2 EHLSALWK AQIGKRGYLTPTSAREHLSALWKNEGFFLN LTPTSAREHLSALWKNEGFFLNYLFSGMDD R E H W K N 1 0 0 0 0 0 1 0 1 0 2 1 0 0 0 1 0 1 0 0 0 0 8 0 982.52362 O95602;B9ZVN9 O95602 263 270 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.002851 130.04 By MS/MS 1 1.015 1.1203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.015 1.1203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11039000 5547500 5491900 0 0 0 0 0 0 11039000 5547500 5491900 0 0 0 0 0 0 0 0 0 6550 1781 6814 33125 33234 33234 1 EHLTEQINVEEK RNGEKHMLPGLSHNKEHLTEQINVEEKLCS HNKEHLTEQINVEEKLCSAEKNSCVQQSDN K E H E K L 0 0 1 0 0 1 4 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1467.7205 Q92576 Q92576 1689 1700 PHF3 PHD finger protein 3 yes yes 3 0.018173 37.94 By MS/MS 1 1.0995 0.99896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0995 0.99896 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1453200 670380 782850 0 0 0 0 0 0 0 0 0 1453200 670380 782850 0 0 0 0 0 0 6551 3539 6815 33126 33235 33235 1 EHLTTVLDK SSLLCIELFQSLSCKEHLTTVLDKLLLTTQ QSLSCKEHLTTVLDKLLLTTQFPFKINEKV K E H D K L 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 1054.5659 Q9UBD5 Q9UBD5 283 291 ORC3 Origin recognition complex subunit 3 yes yes 2 0.0074886 67.897 By MS/MS By MS/MS 2 1 0.72071 0.76572 16.333 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71165 0.75613 1.7828 2 2 Median 1.1529 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6117800 3141800 2976000 0 0 0 0 0 0 5271000 2704900 2566100 846790 436880 409910 0 0 0 0 0 0 6552 4236 6816 33127;33128;33129 33236;33237;33238 33238 3 EHMDAINHDTK KELQKSMERWKNMEKEHMDAINHDTKELEK NMEKEHMDAINHDTKELEKMTNRQGMLLKK K E H T K E 1 0 1 2 0 0 1 0 2 1 0 1 1 0 0 0 1 0 0 0 0 0 11 0 1309.5721 Q9UQE7 Q9UQE7 910 920 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.046407 16.533 By MS/MS By matching By matching 1 1 1 1.3518 1.1635 6.7713 3 Median NaN NaN NaN 0 0 Median 1.3518 1.1635 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.492 1.3037 NaN 1 0 Median 1.1414 1.1557 NaN 1 0 Median NaN NaN NaN 0 0 Median 1110700 483320 627350 0 0 0 749670 306440 443240 0 0 0 144930 55491 89442 216060 121390 94671 0 0 0 6553 4362 6817 33130;33131;33132 33239 33239 1 EHMGDILYK TTAQSDNKITWSIIREHMGDILYKLSSMKF TWSIIREHMGDILYKLSSMKFKDPLKDGEA R E H Y K L 0 0 0 1 0 0 1 1 1 1 1 1 1 0 0 0 0 0 1 0 0 0 9 0 1104.5274 P38606 P38606 572 580 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 1.8617E-05 155.75 By MS/MS By MS/MS 1 1 1.2135 1.0745 0.7967 2 Median 1.1499 1.0806 NaN 1 0 Median 1.2806 1.0685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34708000 14882000 19826000 11258000 4978100 6280200 23450000 9904300 13545000 0 0 0 0 0 0 0 0 0 0 0 0 6554 2276 6818 33133;33134 33240;33241;33242 33242 3 EHMQPTHPIR ESSEKAYSEAHEISKEHMQPTHPIRLGLAL HEISKEHMQPTHPIRLGLALNYSVFYYEIQ K E H I R L 0 1 0 0 0 1 1 0 2 1 0 0 1 0 2 0 1 0 0 0 0 0 10 0 1244.6084 P61981 P61981 163 172 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2;3 0.0023936 46.001 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.79505 0.74748 8.3005 8 Median 0.79435 0.74895 7.2992 3 0 Median 0.90833 0.77333 5.0864 2 0 Median 0.72275 0.67644 10.779 2 0 Median NaN NaN NaN 0 0 Median 0.81123 0.78333 NaN 1 0 Median NaN NaN NaN 0 0 Median 6051400 3312700 2738700 2673900 1406700 1267200 932110 507370 424750 2087000 1204500 882500 0 0 0 358330 194130 164200 0 0 0 6555 2566 6819 33135;33136;33137;33138;33139;33140;33141;33142 33243;33244;33245;33246;33247;33248;33249 33246 7 EHMVLAPR TLAGSCGKFAPFEIKEHMVLAPRRRTAFHP FAPFEIKEHMVLAPRRRTAFHPDLCSQLDQ K E H P R R 1 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 8 0 951.49602 Q13111;K7EPA1 Q13111 475 482 CHAF1A Chromatin assembly factor 1 subunit A yes no 2 0.017954 68.422 By MS/MS 1 0.72974 0.77981 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72974 0.77981 NaN 1 1 Median NaN NaN NaN 0 0 Median 1280100 682100 597970 0 0 0 0 0 0 0 0 0 0 0 0 1280100 682100 597970 0 0 0 6556 2785 6820 33143 33250 33250 1 EHNGHITGIDWAPK YKKNGSQWVKAHELKEHNGHITGIDWAPKS KEHNGHITGIDWAPKSDRIVTCGADRNAYV K E H P K S 1 0 1 1 0 0 1 2 2 2 0 1 0 0 1 0 1 1 0 0 0 0 14 0 1573.7637 A0A1W2PNV4;E9PF58;Q92747 Q92747 50 63 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 3 0.011672 24.935 By MS/MS 1 0.81741 0.86101 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81741 0.86101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5687700 3455700 2232000 0 0 0 0 0 0 5687700 3455700 2232000 0 0 0 0 0 0 0 0 0 6557 334;3552 6821 33144 33251 33251 1 EHPDPGSKDPEEDYPK IVKTMSKERDVFLVKEHPDPGSKDPEEDYP HPDPGSKDPEEDYPKFGLLDQDLSNIGPAY K E H P K F 0 0 0 3 0 0 3 1 1 0 0 2 0 0 4 1 0 0 1 0 0 0 16 1 1838.7959 F5H8F7;Q9UBL3 F5H8F7 99 114 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.031778 16.119 By MS/MS 1 0.47945 0.54341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47945 0.54341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2871000 1881500 989490 0 0 0 0 0 0 2871000 1881500 989490 0 0 0 0 0 0 0 0 0 6558 1048 6822 33145 33252;33253 33253 2 EHPFLVK LRRPKRIIIRGHDEREHPFLVKGGEDLRQD IIRGHDEREHPFLVKGGEDLRQDQRVEQLF R E H V K G 0 0 0 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 7 0 868.48069 P78527 P78527 3747 3753 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.029124 66.138 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.90473 0.87575 14.104 5 Median 0.95039 0.93857 NaN 1 0 Median 0.90473 0.79427 NaN 1 1 Median 0.8175 0.87575 NaN 1 0 Median 1.1195 1.0925 NaN 1 0 Median 0.72811 0.76845 NaN 1 0 Median NaN NaN NaN 0 0 Median 23711000 12424000 11286000 2070100 833220 1236900 7760000 4212100 3547900 8072200 4481000 3591200 4217400 2021300 2196200 1591000 876650 714330 0 0 0 6559 2647 6823 33146;33147;33148;33149;33150 33254;33255 33254 2 EHPVKQELER SMFWVYLATQGVNPKEHPVKQELERIRVYM GVNPKEHPVKQELERIRVYMNRVKEITDKK K E H E R I 0 1 0 0 0 1 3 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1263.6571 J3KPZ4;Q13901 J3KPZ4 119 128 C1D Nuclear nucleic acid-binding protein C1D yes no 3 0.004126 40.727 By matching By MS/MS 1 2 0.89475 0.93604 6.367 3 Median 0.89734 0.88997 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88698 0.9723 5.375 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1577800 757670 820090 147980 58592 89392 0 0 0 1429800 699080 730700 0 0 0 0 0 0 0 0 0 6560 1314 6824 33151;33152;33153 33256;33257 33257 2 EHQAHVENLEADIKR NQLELLLKERDKHLKEHQAHVENLEADIKR EHQAHVENLEADIKRSEGELQQASAKLDVF K E H K R S 2 1 1 1 0 1 3 0 2 1 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1787.8915 Q13439;H0Y6I0;C9JHJ5 Q13439 774 788 GOLGA4 Golgin subfamily A member 4 yes no 4 0.013643 22.475 By MS/MS 1 1.0255 1.0482 NaN 1 Median 1.0255 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2039200 1063600 975610 2039200 1063600 975610 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6561 1156 6825 33154 33258 33258 1 EHQETIDKLR LEKQEELKIVHMHLKEHQETIDKLRGIVSE HMHLKEHQETIDKLRGIVSEKTNEISNMQK K E H L R G 0 1 0 1 0 1 2 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1267.6521 Q02224;A0A087X0P0 Q02224 1732 1741 CENPE Centromere-associated protein E;Kinesin-like protein yes no 3 0.049342 18.745 By MS/MS 1 1.0854 1.2299 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0854 1.2299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8794000 4044100 4749900 0 0 0 0 0 0 8794000 4044100 4749900 0 0 0 0 0 0 0 0 0 6562 107 6826 33155 33259 33259 1 EHQISPGDFPSLR ELVNNLGEIYQKIEREHQISPGDFPSLRKM EREHQISPGDFPSLRKMQELLQTQDFSKFQ R E H L R K 0 1 0 1 0 1 1 1 1 1 1 0 0 1 2 2 0 0 0 0 0 0 13 0 1481.7263 A0A024R571;Q9H4M9;C9JC03;C9J2Z4 A0A024R571 359 371 EHD1 EH domain-containing protein 1 yes no 3 1.0941E-05 90.412 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.73681 0.67398 18.792 4 Median 0.67055 0.64411 NaN 1 0 Median 0.6675 0.57691 NaN 1 0 Median 0.8807 0.89732 NaN 1 0 Median 0.80961 0.70525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16395000 8984200 7410400 7160000 4205800 2954200 1801400 1145000 656390 6961800 3338000 3623800 471370 295260 176100 0 0 0 0 0 0 6563 5 6827 33156;33157;33158;33159 33260;33261;33262;33263 33262 4 EHQLASASELPLGSR DNPALNAQAALSQAREHQLASASELPLGSR EHQLASASELPLGSRPAPQPPVPRPEHCEG R E H S R P 2 1 0 0 0 1 2 1 1 0 3 0 0 0 1 3 0 0 0 0 0 0 15 0 1593.8111 H0YEB6;O60232;G3V1B8 H0YEB6 92 106 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 yes no 2;3 8.2795E-21 141.34 By MS/MS By MS/MS 2 1 0.99984 0.95002 28.536 3 Median 1.1552 1.0937 19.92 2 2 Median 0.84139 0.71158 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39291000 19424000 19868000 29937000 14052000 15885000 9353900 5371500 3982400 0 0 0 0 0 0 0 0 0 0 0 0 6564 1179 6828 33160;33161;33162 33264;33265;33266 33266 3 EHQNIQDLEIENEDLKER LTHMQDEVNVKSHQREHQNIQDLEIENEDL NIQDLEIENEDLKERLRKIQQEQRILLDKV R E H E R L 0 1 2 2 0 2 5 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 18 1 2251.0717 F5H2B9;H0YNH8;Q9BZF9;H0YN48 F5H2B9 183 200 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 4 1.8998E-08 93.152 By MS/MS 1 0.88732 1.0054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88732 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8306400 4539700 3766600 0 0 0 0 0 0 8306400 4539700 3766600 0 0 0 0 0 0 0 0 0 6565 1026 6829 33163 33267 33267 1 EHTAYYIK EVESMGAHLNAYSTREHTAYYIKALSKDLP LNAYSTREHTAYYIKALSKDLPKAVELLGD R E H I K A 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 2 0 0 0 8 0 1023.5025 P31930 P31930 127 134 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.0028236 104.45 By MS/MS By MS/MS 1 1 1.5337 1.3832 3.7102 2 Median 1.4096 1.3474 NaN 1 0 Median 1.6687 1.42 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8341100 3242500 5098600 3177400 1381800 1795500 5163700 1860700 3303000 0 0 0 0 0 0 0 0 0 0 0 0 6566 2205 6830 33164;33165 33268;33269;33270 33270 3 EHTEEDFKGR IIQSSLPEGVRLSVKEHTEEDFKGRFKARP RLSVKEHTEEDFKGRFKARPELEELLAKLK K E H G R F 0 1 0 1 0 0 3 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 10 1 1246.5578 F5H702;Q96GC5;F5H8D0 F5H702 89 98 MRPL48 39S ribosomal protein L48, mitochondrial yes no 3 0.011288 32.523 By MS/MS By matching 1 1 1.3014 1.2281 10.377 2 Median NaN NaN NaN 0 0 Median 1.294 1.1412 NaN 1 0 Median 1.3088 1.3216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 732500 312090 420410 0 0 0 639420 269760 369660 93084 42329 50755 0 0 0 0 0 0 0 0 0 6567 1044 6831 33166;33167 33271;33272 33272 2 EHTLQASNQSEIIQK DQQQKKKQQQIEIKREHTLQASNQSEIIQK EHTLQASNQSEIIQKQVVMKHNAVIEHLKQ R E H Q K Q 1 0 1 0 0 3 2 0 1 2 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1724.8693 Q12830;A0A2R8Y7Q1 Q12830 2650 2664 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.0016514 34.432 By MS/MS 1 0.91341 1.0051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91341 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1387200 723520 663650 0 0 0 0 0 0 1387200 723520 663650 0 0 0 0 0 0 0 0 0 6568 2762 6832 33168 33273;33274 33274 2 EHTNLMAEYR SKIQKQLDQVRKQQKEHTNLMAEYRNKQQQ RKQQKEHTNLMAEYRNKQQQQQQQQQQQQQ K E H Y R N 1 1 1 0 0 0 2 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1262.5714 O14686 O14686 3587 3596 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2;3 0.00037009 81.594 By MS/MS By MS/MS 1 1 1.2059 1.1901 40.505 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79825 0.89373 NaN 1 0 Median 1.8217 1.5848 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2508400 1029300 1479200 0 0 0 0 0 0 1671000 745180 925830 837420 284090 553330 0 0 0 0 0 0 6569 1490 6833 33169;33170 33275;33276 33275 2 EHTSHLEAELEK VEKLKGELESSDQVREHTSHLEAELEKHMA QVREHTSHLEAELEKHMAAASAECQNYAKE R E H E K H 1 0 0 0 0 0 4 0 2 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1421.6787 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1196 1207 RRBP1 Ribosome-binding protein 1 yes no 2;3 7.6945E-05 153.12 By MS/MS By MS/MS By MS/MS 2 3 2 1.0996 1.0603 23.013 7 Median 0.88432 0.85742 30.04 2 0 Median 1.0996 0.93161 16.946 3 0 Median NaN NaN NaN 0 0 Median 1.4829 1.2545 7.6026 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21507000 10299000 11208000 3361800 1712300 1649500 14526000 7178500 7347500 0 0 0 3619200 1408000 2211300 0 0 0 0 0 0 6570 4222 6834 33171;33172;33173;33174;33175;33176;33177 33277;33278;33279;33280;33281;33282;33283;33284;33285;33286 33283 10 EHVEEISELFYDAK ANLLAKINGKDSIEKEHVEEISELFYDAKS KEHVEEISELFYDAKSSAKILADQQDKYMK K E H A K S 1 0 0 1 0 0 4 0 1 1 1 1 0 1 0 1 0 0 1 1 0 0 14 0 1707.7992 Q9Y265;H7C4G5 Q9Y265 428 441 RUVBL1 RuvB-like 1 yes no 3 4.5867E-05 79.466 By matching By MS/MS By matching 1 2 1 0.91949 0.91977 17.687 4 Median NaN NaN NaN 0 0 Median 0.80466 0.68677 NaN 1 0 Median 0.91949 0.91977 4.0297 2 0 Median 1.1805 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14712000 7725300 6986200 0 0 0 3293100 1972900 1320100 11078000 5608000 5470400 340120 144430 195690 0 0 0 0 0 0 6571 4375 6835 33178;33179;33180;33181 33287;33288 33287 2 EHVEPVFGFPQFVR GSGYPNDPKTKAWLKEHVEPVFGFPQFVRF KEHVEPVFGFPQFVRFSWRTAQTILEKEAE K E H V R F 0 1 0 0 0 1 2 1 1 0 0 0 0 3 2 0 0 0 0 3 0 0 14 0 1686.8518 O75792 O75792 222 235 RNASEH2A Ribonuclease H2 subunit A yes yes 3 0.0051127 43.382 By MS/MS 1 0.78518 0.75908 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78518 0.75908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1757400 930530 826880 0 0 0 0 0 0 1757400 930530 826880 0 0 0 0 0 0 0 0 0 6572 1695 6836 33182 33289 33289 1 EHVIEALR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K E H L R R 1 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 965.52943 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5 F8W7C6 95 102 RPL10 60S ribosomal protein L10 yes no 2 0.0022962 111.04 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 3 1.0941 0.99338 24.156 8 Median 1.1009 1.047 NaN 1 0 Median 1.0866 0.91895 NaN 1 0 Median 1.0416 0.99733 NaN 1 0 Median 1.0873 0.89996 NaN 1 0 Median 1.1417 1.1453 NaN 1 0 Median 1.2333 0.98945 39.666 3 0 Median 83554000 38763000 44791000 45906000 21966000 23940000 8283600 3865400 4418100 4408100 2163100 2245000 1950600 1070100 880430 7888100 3496800 4391400 15117000 6200800 8916200 6573 1084 6837 33183;33184;33185;33186;33187;33188;33189;33190 33290;33291;33292;33293;33294;33295;33296;33297 33292 8 EHVIEALRR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP TKLQNKEHVIEALRRAKFKFPGRQKIHISK K E H R R A 1 2 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1121.6305 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5 F8W7C6 95 103 RPL10 60S ribosomal protein L10 yes no 2 0.0012807 91.626 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1168 1.1938 22.837 5 Median 1.1168 1.1938 NaN 1 0 Median 0.96607 0.85153 14.032 2 0 Median 1.1855 1.2291 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2434 1.3484 NaN 1 0 Median NaN NaN NaN 0 0 Median 34494000 15802000 18692000 11876000 5868800 6007100 14404000 6422500 7981200 2560100 1152200 1407900 0 0 0 5654700 2358900 3295900 0 0 0 6574 1084 6838 33191;33192;33193;33194;33195 33298;33299;33300;33301;33302;33303 33298 6 EHVKPLFNMEDK NYQKIGPITPLEFYREHVKPLFNMEDKVVN FYREHVKPLFNMEDKVVNDPRPQHKYNKLY R E H D K V 0 0 1 1 0 0 2 0 1 0 1 2 1 1 1 0 0 0 0 1 0 0 12 1 1485.7286 K7ES02;Q13867;K7ESE8;J3KSD8 K7ES02 256 267 BLMH Bleomycin hydrolase yes no 3 0.00022004 62.088 By MS/MS 1 0.93324 0.87608 NaN 1 Median NaN NaN NaN 0 0 Median 0.93324 0.87608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4779400 2429900 2349500 0 0 0 4779400 2429900 2349500 0 0 0 0 0 0 0 0 0 0 0 0 6575 1400 6839 33196 33304 33304 1 EHVLQSSLSQEHKDPK KGEVDTAPQGNKDLKEHVLQSSLSQEHKDP HVLQSSLSQEHKDPKATPP___________ K E H P K A 0 0 0 1 0 2 2 0 2 0 2 2 0 0 1 3 0 0 0 1 0 0 16 1 1860.933 P48382 P48382 597 612 RFX5 DNA-binding protein RFX5 yes yes 3;4 0.0024394 29.013 By MS/MS By matching 2 1 0.82378 0.93244 27.826 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74977 0.8525 12.676 2 0 Median 1.4571 1.3454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5219600 3056900 2162700 0 0 0 0 0 0 5043800 2973000 2070800 175790 83906 91888 0 0 0 0 0 0 6576 2360 6840 33197;33198;33199 33305;33306;33307;33308 33305 4 EHVMNEVDTNKDR EDDMVEMEEERLRMREHVMNEVDTNKDRLV MREHVMNEVDTNKDRLVTLEEFLKATEKKE R E H D R L 0 1 2 2 0 0 2 0 1 0 0 1 1 0 0 0 1 0 0 2 0 0 13 1 1585.7155 E9PKG6;P80303;H0YD18 E9PKG6 299 311 NUCB2 Nucleobindin-2;Nesfatin-1 yes no 3 0.00016609 71.548 By MS/MS 1 1.1939 1.0909 NaN 1 Median NaN NaN NaN 0 0 Median 1.1939 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1052100 491800 560260 0 0 0 1052100 491800 560260 0 0 0 0 0 0 0 0 0 0 0 0 6577 948 6841 33200 33309;33310 33310 2 EHYLEDILAK GCPVIKVPGFMYPVKEHYLEDILAKLGKHQ MYPVKEHYLEDILAKLGKHQYLHRHRHHES K E H A K L 1 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1229.6292 H7BXY3;Q7L2E3 H7BXY3 592 601 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.056985 42.599 By MS/MS 1 1.4374 1.2112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4374 1.2112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1578300 651600 926690 0 0 0 0 0 0 0 0 0 1578300 651600 926690 0 0 0 0 0 0 6578 1244 6842 33201 33311 33311 1 EHYMELVYR VSGASMTTRGCFFTREHYMELVYRGLTDKV GCFFTREHYMELVYRGLTDKVGRVKLLSPS R E H Y R G 0 1 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 2 1 0 0 9 0 1238.5754 O95602;B9ZVN9 O95602 651 659 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2;3 0.00018233 105.57 By matching By MS/MS By matching 1 2 1 1.2688 1.2452 25.425 4 Median NaN NaN NaN 0 0 Median 0.98481 0.85665 NaN 1 0 Median 1.27 1.3907 18.36 2 0 Median 1.45 1.2695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20485000 9161700 11324000 0 0 0 631180 316870 314310 19555000 8737400 10818000 298730 107410 191320 0 0 0 0 0 0 6579 1781 6843 33202;33203;33204;33205 33312;33313;33314;33315 33314 4 EHYVDLK LVGLKFMQASEDLLKEHYVDLKDRPFFAGL QASEDLLKEHYVDLKDRPFFAGLVKYMHSG K E H L K D 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 902.44978 P15531;Q32Q12;J3KPD9;E7ERL0;E5RHP0 Q32Q12 75 81 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase no no 2 0.009327 84.244 By MS/MS By MS/MS By MS/MS 1 2 1 1.2448 1.143 7.1516 4 Median 1.1589 1.0953 NaN 1 0 Median 1.3278 1.1196 8.9393 2 0 Median 1.2254 1.2245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24755000 10433000 14322000 6628400 3046100 3582300 16230000 6440400 9790000 1896300 946900 949440 0 0 0 0 0 0 0 0 0 6580 3008;2018 6844 33206;33207;33208;33209 33316;33317;33318;33319 33319 4 EHYVDLKDRPFFAGLVK LVGLKFMQASEDLLKEHYVDLKDRPFFAGL YVDLKDRPFFAGLVKYMHSGPVVAMVWEGL K E H V K Y 1 1 0 2 0 0 1 1 1 0 2 2 0 2 1 0 0 0 1 2 0 0 17 2 2033.0734 P15531;Q32Q12;J3KPD9;E7ERL0;E5RHP0 Q32Q12 75 91 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase no no 4 0.024824 16.88 By matching By MS/MS 1 1 1.0128 1.1031 5.8658 2 Median 1.0067 1.0583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0188 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7616800 3358400 4258400 1801700 692630 1109100 0 0 0 5815100 2665800 3149300 0 0 0 0 0 0 0 0 0 6581 3008;2018 6845 33210;33211 33320;33321 33320 2 EIAAFFPDFSEQR RNTTHGSDSVVSASREIAAFFPDFSEQRWY SREIAAFFPDFSEQRWYEEEEPQLRCGPVC R E I Q R W 2 1 0 1 0 1 2 0 0 1 0 0 0 3 1 1 0 0 0 0 0 0 13 0 1555.7307 C9JQB1;C9J9V6;A0A0C4DG91;O75414;A0A2R8Y547;A0A2R8Y7V2 C9JQB1 95 107 NME6 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase 6 yes no 2 0.0034196 44.309 By MS/MS By matching By matching By matching 1 1 1 1 1.0213 0.88824 8.3185 4 Median 0.83153 0.82585 NaN 1 0 Median 1.1815 1.0018 NaN 1 0 Median 0.97782 0.91333 NaN 1 0 Median 1.0668 0.86384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2513000 1303200 1209800 1279700 651670 628000 240560 97312 143250 924910 522850 402060 67826 31378 36448 0 0 0 0 0 0 6582 236 6846 33212;33213;33214;33215 33322 33322 1 EIAAVFQDNR SPPQEEIGLIRLLRREIAAVFQDNRMIAVC RLLRREIAAVFQDNRMIAVCQNVALSAEDK R E I N R M 2 1 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1161.5778 Q7Z7H8 Q7Z7H8 85 94 MRPL10 39S ribosomal protein L10, mitochondrial yes yes 2 9.096E-06 153.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.3757 1.2397 20.203 4 Median 1.0399 0.988 NaN 1 0 Median 1.6939 1.4325 NaN 1 0 Median 1.1173 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8308 1.4737 NaN 1 0 Median 71382000 29942000 41439000 24945000 10699000 14246000 8252800 2651500 5601300 32805000 14830000 17975000 0 0 0 0 0 0 5378800 1761500 3617300 6583 3259 6847 33216;33217;33218;33219;33220 33323;33324;33325;33326;33327;33328;33329;33330 33326 8 EIADYLAAGKDER LLEKKKTELAQKARKEIADYLAAGKDERAR RKEIADYLAAGKDERARIRVEHIIREDYLV K E I E R A 3 1 0 2 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 13 1 1449.71 P53990;H3BMU1;H3BUI0;H3BQF7;F5GXM3;H3BRE2;H3BPP6 P53990 39 51 IST1 IST1 homolog yes no 2;3 6.4886E-06 156.48 By MS/MS By MS/MS 4 4 0.96344 0.96121 12.174 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93254 1.0019 10.509 4 1 Median 1.0077 0.92129 13.097 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75982000 38090000 37892000 0 0 0 0 0 0 44896000 23432000 21464000 31086000 14658000 16428000 0 0 0 0 0 0 6584 2477 6848 33221;33222;33223;33224;33225;33226;33227;33228 33331;33332;33333;33334;33335;33336;33337;33338 33336 8 EIAEAYLGK FYPEEVSSMVLTKMKEIAEAYLGKTVTNAV VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K E I G K T 2 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 992.51786 P11142;E9PKE3;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 P11142 129 137 HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0011047 85.212 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 3 3 4 1.141 1.0163 43.527 16 Median 1.1814 1.0819 2.2582 2 0 Median 1.1332 0.97697 6.2377 3 1 Median 1.0906 1.0667 NaN 1 0 Median 1.1419 0.96793 1.4556 3 0 Plateau 1.1738 1.2046 26.6 3 0 Median 0.84206 0.69881 70.166 4 0 Median 359310000 162460000 196850000 65356000 28925000 36431000 188550000 84074000 104470000 71586000 33900000 37685000 19058000 8704700 10353000 10050000 4417500 5632600 4716000 2441800 2274200 6585 1950 6849 33229;33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240;33241;33242;33243;33244 33339;33340;33341;33342;33343;33344;33345;33346;33347;33348;33349;33350;33351;33352 33339 14 EIAEAYLGYPVTNAVITVPAYFNDSQR FYPEEISSMVLTKMKEIAEAYLGYPVTNAV NAVITVPAYFNDSQRQATKDAGVIAGLNVL K E I Q R Q 4 1 2 1 0 1 2 1 0 2 1 0 0 1 2 1 2 0 3 3 0 0 27 0 3000.4869 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 130 156 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.054165 8.1792 By MS/MS By matching 1 1 0.83325 0.71994 6.5939 2 Median NaN NaN NaN 0 0 Median 0.79273 0.68714 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87583 0.7543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2758700 1409300 1349400 0 0 0 2543700 1305700 1238000 0 0 0 214970 103590 111390 0 0 0 0 0 0 6586 278 6850 33245;33246 33353 33353 1 EIAEEYGGVMVSFPR KHHRHFVIRRGQVLREIAEEYGGVMVSFPR EIAEEYGGVMVSFPRSGTQSDKVTLKGAKD R E I P R S 1 1 0 0 0 0 3 2 0 1 0 0 1 1 1 1 0 0 1 2 0 0 15 0 1682.7974 Q00341;A0A024R4E5;H0Y394;H7C2D1 Q00341 825 839 HDLBP Vigilin yes no 2 6.9056E-07 96.64 By MS/MS By matching By MS/MS 1 1 1 1.1898 1.053 15.337 3 Median 1.0243 0.96476 NaN 1 0 Median 1.1898 1.053 NaN 1 0 Median 1.1928 1.3002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10436000 5202900 5233100 8055400 4158400 3897000 559950 254210 305740 1820700 790350 1030400 0 0 0 0 0 0 0 0 0 6587 4 6851 33247;33248;33249 33354;33355 33354 2 EIAENALGK QGRSTGEAFVQFASKEIAENALGKHKERIG VQFASKEIAENALGKHKERIGHRYIEIFRS K E I G K H 2 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 943.49746 P31942 P31942 68 76 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.0008961 91.9 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 5 4 1.0678 0.98974 12.27 15 Median NaN NaN NaN 0 0 Median 1.1728 0.99383 11.112 2 0 Median 1.1614 1.1443 23.743 2 0 Median 1.0444 0.87987 3.758 2 1 Median 1.0167 1.0746 13.167 5 0 Median 1.1973 0.98181 1.5869 4 0 Median 136000000 65046000 70956000 0 0 0 5293700 2306500 2987200 8018100 4332300 3685800 11486000 5466000 6020100 90700000 44100000 46600000 20504000 8841700 11663000 6588 2208 6852 33250;33251;33252;33253;33254;33255;33256;33257;33258;33259;33260;33261;33262;33263;33264 33356;33357;33358;33359;33360;33361;33362;33363;33364;33365;33366;33367;33368;33369 33365 14 EIAENITK ISQMLKTKEQKVNPREIAENITKHLPDNEC EQKVNPREIAENITKHLPDNECIEKVEIAG R E I T K H 1 0 1 0 0 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 916.48656 P54136 P54136 136 143 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0085925 62.464 By MS/MS By MS/MS By MS/MS 1 1 1 1.2339 1.031 30.528 3 Median 1.0652 1.01 NaN 1 0 Median 1.2339 1.031 NaN 1 0 Median 1.6258 1.731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27681000 12537000 15143000 7965700 3781000 4184600 18110000 8221200 9889000 1604700 534820 1069900 0 0 0 0 0 0 0 0 0 6589 2480 6853 33265;33266;33267 33370;33371;33372;33373;33374 33374 5 EIAGHIMEFSQDQHGSR LEDFRNNRYPNLQLREIAGHIMEFSQDQHG AGHIMEFSQDQHGSRFIQLKLERATPAERQ R E I S R F 1 1 0 1 0 2 2 2 2 2 0 0 1 1 0 2 0 0 0 0 0 0 17 0 1940.8799 Q5T1Z4;Q5T1Z8;H0YDK8;E9PR38;H0YEH2;Q14671 Q5T1Z4 849 865 PUM1 Pumilio homolog 1 yes no 3 0.0013474 30.536 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.78723 0.81076 34.952 4 Median 0.96437 0.93255 NaN 1 0 Median 1.4333 1.2281 NaN 1 0 Median 0.64095 0.70488 NaN 1 1 Median 0.64263 0.54691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16676000 9853100 6822400 3887200 1865500 2021700 2068100 661430 1406700 8169700 5551700 2618000 2550600 1774500 776020 0 0 0 0 0 0 6590 3081 6854 33268;33269;33270;33271 33375;33376 33375 2 EIAITHHVK LSFRVRSIQEEVSIKEIAITHHVKEGHEKA EEVSIKEIAITHHVKEGHEKADPSQFELLK K E I V K E 1 0 0 0 0 0 1 0 2 2 0 1 0 0 0 0 1 0 0 1 0 0 9 0 1046.5873 B1AXG1;B7ZB17;P51812;B4DG22;B1AXG2;A0A2R8YGB7 B1AXG1 20 28 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.049787 31.074 By MS/MS 1 1.0832 0.96237 NaN 1 Median NaN NaN NaN 0 0 Median 1.0832 0.96237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1539300 712620 826660 0 0 0 1539300 712620 826660 0 0 0 0 0 0 0 0 0 0 0 0 6591 581 6855 33272 33377 33377 1 EIALWFR KNLIHGSDSVESARREIALWFRADELLCWE DSVESARREIALWFRADELLCWEDSAGHWL R E I F R A 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 933.50724 Q13232;H3BPR2 Q13232 146 152 NME3 Nucleoside diphosphate kinase 3;Nucleoside diphosphate kinase yes no 2 0.017735 64.866 By MS/MS By MS/MS By matching 1 1 1 1.3899 1.133 17.675 3 Median 0.90113 0.89086 NaN 1 0 Median 1.5036 1.2575 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3899 1.133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6064100 3155600 2908500 5219300 2830500 2388800 607130 244170 362960 0 0 0 237750 80989 156760 0 0 0 0 0 0 6592 2798 6856 33273;33274;33275 33378;33379;33380 33379 3 EIAQDFK TELLIRKLPFQRLVREIAQDFKTDLRFQSA LPFQRLVREIAQDFKTDLRFQSAAIGALQE R E I F K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 74 80 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t yes no 1;2 0.0022148 108.24 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 17 16 1.0426 1.0305 19.745 41 Median 1.2068 1.1396 22.923 2 0 Median 1.575 1.3665 7.4249 2 0 Median 0.96773 0.92458 20.848 3 0 Plateau 1.6434 1.35 10.057 2 0 Median 0.91307 0.95007 11.949 16 0 Median 1.3402 1.1001 14.579 16 0 Median 2200400000 963690000 1236700000 2742600 1290500 1452100 5063900 1943400 3120500 20046000 10102000 9944100 3560900 1394500 2166500 576760000 292980000 283780000 1592200000 655980000 936220000 6593 1366 6857 33276;33277;33278;33279;33280;33281;33282;33283;33284;33285;33286;33287;33288;33289;33290;33291;33292;33293;33294;33295;33296;33297;33298;33299;33300;33301;33302;33303;33304;33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315;33316;33317 33381;33382;33383;33384;33385;33386;33387;33388;33389;33390;33391;33392;33393;33394;33395;33396;33397;33398;33399;33400;33401;33402;33403;33404;33405;33406;33407;33408;33409;33410;33411;33412;33413;33414;33415;33416;33417;33418;33419;33420;33421;33422 33420 42 EIAQDFKTDLR TELLIRKLPFQRLVREIAQDFKTDLRFQSA RLVREIAQDFKTDLRFQSAAIGALQEASEA R E I L R F 1 1 0 2 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1334.683 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 74 84 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t yes no 2;3 1.0196E-35 186.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 3 2 22 15 1.0051 1.0281 16.161 50 Median 1.0003 1.0081 8.3526 5 0 Median 1.4263 1.2587 19.478 3 0 Median 0.90543 0.93512 1.9459 3 0 Plateau 1.9104 1.6911 4.1763 2 0 Median 0.89307 0.99278 7.7572 22 5 Median 1.4293 1.2456 12.951 15 1 Median 7908700000 3863700000 4045000000 70961000 37375000 33587000 18340000 7740200 10600000 67361000 35228000 32133000 9511900 3170500 6341500 5501800000 2877200000 2624600000 2240800000 903000000 1337800000 6594 1366 6858 33318;33319;33320;33321;33322;33323;33324;33325;33326;33327;33328;33329;33330;33331;33332;33333;33334;33335;33336;33337;33338;33339;33340;33341;33342;33343;33344;33345;33346;33347;33348;33349;33350;33351;33352;33353;33354;33355;33356;33357;33358;33359;33360;33361;33362;33363;33364;33365;33366;33367 33423;33424;33425;33426;33427;33428;33429;33430;33431;33432;33433;33434;33435;33436;33437;33438;33439;33440;33441;33442;33443;33444;33445;33446;33447;33448;33449;33450;33451;33452;33453;33454;33455;33456;33457;33458;33459;33460;33461;33462;33463;33464;33465;33466;33467;33468;33469;33470;33471;33472;33473;33474;33475;33476;33477;33478;33479;33480;33481;33482;33483;33484;33485;33486;33487;33488;33489;33490;33491;33492;33493;33494;33495;33496;33497;33498;33499;33500;33501;33502;33503;33504;33505 33440 83 EIAQEFKTDLR TELLIRKLPFQRLVREIAQEFKTDLRFQSS RLVREIAQEFKTDLRFQSSAVMALQEAREA R E I L R F 1 1 0 1 0 1 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1348.6987 Q5TEC6;A0A590UJL8 Q5TEC6 74 84 HIST2H3PS2 Histone H3 yes no 2;3 3.3045E-09 175.93 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 17 11 0.88727 0.97974 38.593 35 Median 1.3205 1.2382 33.114 2 0 Median 1.9594 1.7285 NaN 1 0 Median 0.88727 0.91877 52.952 3 0 Median 2.2602 2.0008 NaN 1 0 Median 0.76629 0.86614 20.054 17 2 Median 1.3371 1.0838 40.458 11 1 Median 6652900000 2856500000 3796400000 6868600 2935000 3933600 1184000 402670 781300 35231000 17975000 17256000 829910 185860 644050 1867800000 998090000 869750000 4740900000 1836900000 2904000000 6595 3104 6859 33368;33369;33370;33371;33372;33373;33374;33375;33376;33377;33378;33379;33380;33381;33382;33383;33384;33385;33386;33387;33388;33389;33390;33391;33392;33393;33394;33395;33396;33397;33398;33399;33400;33401;33402 33506;33507;33508;33509;33510;33511;33512;33513;33514;33515;33516;33517;33518;33519;33520;33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534;33535;33536;33537;33538;33539;33540;33541;33542;33543;33544;33545;33546;33547;33548;33549 33524 44 EIAQHLEQQNDLLQMIR AKLIQEQRVTNLHVKEIAQHLEQQNDLLQM AQHLEQQNDLLQMIRRSQEVQACAQERQAQ K E I I R R 1 1 1 1 0 4 2 0 1 2 3 0 1 0 0 0 0 0 0 0 0 0 17 0 2078.0579 Q69YI7 Q69YI7 242 258 NAIF1 Nuclear apoptosis-inducing factor 1 yes yes 3 6.078E-06 69.594 By MS/MS 1 1.0512 1.1388 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0512 1.1388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3565200 1714000 1851200 0 0 0 0 0 0 3565200 1714000 1851200 0 0 0 0 0 0 0 0 0 6596 3128 6860 33403 33550;33551 33551 2 EIAQLVEDVQR LTRSSLEVELAAKEREIAQLVEDVQRLQAS AKEREIAQLVEDVQRLQASLTKLRENSASQ R E I Q R L 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1298.683 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 309 319 CUX1 Protein CASP no no 2 1.0687E-14 182.65 By MS/MS By MS/MS By matching 1 3 1 0.94769 0.8965 67.152 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94769 1.0329 NaN 1 0 Median 1.0178 0.8965 86.321 3 0 Median NaN NaN NaN 0 0 Median 0.90264 0.75307 NaN 1 0 Median 20544000 11120000 9424100 0 0 0 0 0 0 17972000 9598200 8373500 2284200 1391200 893010 0 0 0 288340 130760 157580 6597 388;2847 6861 33404;33405;33406;33407;33408 33552;33553;33554;33555 33552 4 EIAVHIGDR YGMNVCQPTPGKALKEIAVHIGDRDNAVRN PGKALKEIAVHIGDRDNAVRNAALNTIVTV K E I D R D 1 1 0 1 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 1 0 0 9 0 1008.5352 Q14008 Q14008 1370 1378 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0028118 69.423 By MS/MS 1 0.99498 0.87515 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99498 0.87515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1261200 621960 639270 0 0 0 0 0 0 0 0 0 1261200 621960 639270 0 0 0 0 0 0 6598 2850 6862 33409 33556 33556 1 EIAVHIGDRDNAVR YGMNVCQPTPGKALKEIAVHIGDRDNAVRN KEIAVHIGDRDNAVRNAALNTIVTVYNVHG K E I V R N 2 2 1 2 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 2 0 0 14 1 1563.8118 Q14008 Q14008 1370 1383 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 2.5588E-09 141.38 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 0.98457 1.0231 21.72 7 Median 0.95665 1.0231 NaN 1 0 Median 1.1101 1.121 NaN 1 0 Median 1.0265 1.2723 19.571 2 0 Median 1.0504 0.98897 3.6343 2 0 Median NaN NaN NaN 0 0 Median 0.77975 0.70489 NaN 1 0 Median 56242000 25699000 30543000 5693700 2759300 2934300 1990700 941610 1049100 33254000 15017000 18237000 11732000 5223300 6508900 0 0 0 3571700 1757700 1814000 6599 2850 6863 33410;33411;33412;33413;33414;33415;33416 33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567 33561 11 EIDDEANSYFQR DLSQVWPEANQHFSKEIDDEANSYFQRIYN FSKEIDDEANSYFQRIYNHPPHPTMSVDEV K E I Q R I 1 1 1 2 0 1 2 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 12 0 1485.6372 A5YKK6;H3BR89;H3BMH0 A5YKK6 843 854 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 2.2273E-06 166.33 By MS/MS By MS/MS By MS/MS 1 1 1 1.0969 0.92927 9.6861 3 Median 0.88309 0.82888 NaN 1 0 Median 1.0969 0.92927 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1423 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16059000 8091300 7967900 12511000 6415900 6095000 2877500 1386700 1490800 0 0 0 670810 288670 382140 0 0 0 0 0 0 6600 503 6864 33417;33418;33419 33568;33569;33570;33571;33572 33569 5 EIDDSVLGQTGPYR AAFRALSQGVESVKKEIDDSVLGQTGPYRR KEIDDSVLGQTGPYRRPQRLRKRTEFAGDK K E I Y R R 0 1 0 2 0 1 1 2 0 1 1 0 0 0 1 1 1 0 1 1 0 0 14 0 1548.742 O43615;M0QXU7 O43615 189 202 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 5.4319E-08 113.47 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 1 0.92436 0.89197 25.319 6 Median 0.61131 0.60749 NaN 1 1 Median 0.84847 0.73871 NaN 1 0 Median 0.99256 1.081 NaN 1 0 Median 1.0156 0.89197 21.964 2 0 Median 1.0747 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median 29581000 15721000 13860000 8016100 4752600 3263600 5900200 3068900 2831300 10005000 4708200 5297200 1373600 741450 632140 4285800 2450200 1835600 0 0 0 6601 1577 6865 33420;33421;33422;33423;33424;33425 33573;33574;33575;33576;33577 33574 5 EIDDTYIEDAADVDAR EIVLPENAEKELEEREIDDTYIEDAADVDA IDDTYIEDAADVDARKQAIRDAERVKEMKR R E I A R K 3 1 0 5 0 0 2 0 0 2 0 0 0 0 0 0 1 0 1 1 0 0 16 0 1809.7905 Q99459 Q99459 506 521 CDC5L Cell division cycle 5-like protein yes yes 2 1.2308E-10 110.98 By matching By matching By MS/MS By matching By matching 1 1 4 2 1 1.0444 0.91331 34.523 9 Median 0.43436 0.43874 NaN 1 0 Median 0.69809 0.62501 NaN 1 0 Median 1.107 1.1408 16.937 4 0 Median 1.093 0.94259 7.9202 2 0 Median NaN NaN NaN 0 0 Median 0.96678 0.81774 NaN 1 0 Median 15317000 8183500 7133700 652730 456230 196500 151970 91809 60165 13655000 7190300 6464900 684650 343340 341310 0 0 0 172700 101820 70879 6602 3745 6866 33426;33427;33428;33429;33430;33431;33432;33433;33434 33578;33579 33578 2 EIDELIKK QQLEIVCLIDPGCFREIDELIKKETKGKGS IDPGCFREIDELIKKETKGKGSLEVLNLKD R E I K K E 0 0 0 1 0 0 2 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 8 1 986.56481 Q9Y3A5;A0A087X020 Q9Y3A5 219 226 SBDS Ribosome maturation protein SBDS yes no 2 0.0049322 94.262 By MS/MS By MS/MS By matching 2 2 3 1.2758 1.1385 28.287 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0037 1.0706 1.8078 2 0 Median 1.2422 1.1407 22.674 2 0 Median NaN NaN NaN 0 0 Median 1.4623 1.3205 36.158 3 0 Median 19679000 8456800 11223000 0 0 0 0 0 0 8504400 3839800 4664600 4176400 1824400 2352100 0 0 0 6998500 2792600 4205800 6603 100 6867 33435;33436;33437;33438;33439;33440;33441 33580;33581;33582;33583 33580 4 EIDGGLETLR ASQVTLEGDKLKVEREIDGGLETLRLKLPA LKVEREIDGGLETLRLKLPAVVTADLRLNE R E I L R L 0 1 0 1 0 0 2 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1101.5666 P38117;M0QY67 P38117 165 174 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.00033827 85.676 By MS/MS By MS/MS 1 1 1.2666 1.1368 34.084 2 Median 0.93839 0.89334 NaN 1 0 Median 1.7097 1.4466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127240000 58483000 68759000 92392000 45285000 47107000 34851000 13198000 21653000 0 0 0 0 0 0 0 0 0 0 0 0 6604 2272 6868 33442;33443 33584;33585 33584 2 EIDKNDHLYILLSTLEPTDAGILGTTK RAGYSLEKVFGIQLKEIDKNDHLYILLSTL STLEPTDAGILGTTKDSPKLGLLMVLLSII K E I T K D 1 0 1 3 0 0 2 2 1 3 5 2 0 0 1 1 4 0 1 0 0 0 27 1 2969.5597 Q9UNF1;Q5H909;Q5H907 Q9UNF1 338 364 MAGED2 Melanoma-associated antigen D2 yes no 4 4.1333E-09 47.745 By MS/MS 1 1.0009 0.93822 NaN 1 Median NaN NaN NaN 0 0 Median 1.0009 0.93822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2651000 1181600 1469400 0 0 0 2651000 1181600 1469400 0 0 0 0 0 0 0 0 0 0 0 0 6605 4343 6869 33444 33586 33586 1 EIDLLLGQTDDTR AVLKNEKLRDKERRKEIDLLLGQTDDTRYH RKEIDLLLGQTDDTRYHVLVNLGKKITDYG K E I T R Y 0 1 0 3 0 1 1 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 13 0 1487.7468 O75643;A0A494C1A5 O75643 156 168 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 4.0578E-11 112.83 By MS/MS By MS/MS 1 1 1.203 1.0277 NaN 1 Median NaN NaN NaN 0 0 Median 1.203 1.0277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6098500 2699400 3399100 0 0 0 6098500 2699400 3399100 0 0 0 0 0 0 0 0 0 0 0 0 6606 1688 6870 33445;33446 33587;33588;33589 33587 3 EIDLVNRDPK ADELSEKQVYDAHTKEIDLVNRDPKHLNDD DAHTKEIDLVNRDPKHLNDDVVKIDFEDVI K E I P K H 0 1 1 2 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1197.6354 Q03135;E9PCT5;C9JKI3;P56539 Q03135 48 57 CAV1;CAV3 Caveolin-1;Caveolin;Caveolin-3 yes no 2;3 0.0017528 81.548 By MS/MS By MS/MS 2 3 0.83913 0.83272 33.021 5 Median 0.90678 0.89943 10.899 2 0 Median 0.6235 0.55006 35.873 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12795000 7155400 5639300 6842000 3792700 3049300 5952700 3362800 2589900 0 0 0 0 0 0 0 0 0 0 0 0 6607 2707 6871 33447;33448;33449;33450;33451 33590;33591;33592;33593;33594 33590 5 EIDTDSTSQGESK SSETMDKPVDLSTRKEIDTDSTSQGESKIV RKEIDTDSTSQGESKIVSFGFGSSTGLSFA K E I S K I 0 0 0 2 0 1 2 1 0 1 0 1 0 0 0 3 2 0 0 0 0 0 13 0 1395.6001 P49792 P49792 2824 2836 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.014439 33.875 By matching By matching By MS/MS By matching By matching 2 1 4 2 2 0.89425 0.92647 25.63 11 Median 0.81924 0.80665 0.56051 2 0 Median 1.3318 1.2072 NaN 1 0 Median 0.90139 0.98998 39.249 4 0 Median 0.88081 0.80113 3.8375 2 0 Median 0.97424 1.0021 11.096 2 0 Median NaN NaN NaN 0 0 Median 6739200 3529400 3209800 243080 140870 102210 384400 167310 217090 4739800 2567800 2172000 671520 335280 336230 700450 318100 382350 0 0 0 6608 2401 6872 33452;33453;33454;33455;33456;33457;33458;33459;33460;33461;33462 33595;33596 33595 2 EIEAEIQALR AGYIEKVHYLEQQNKEIEAEIQALRQKQAS EQQNKEIEAEIQALRQKQASHAQLGDAYDQ K E I L R Q 2 1 0 0 0 1 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.6245 E7EMV2;E7ESP9;P07197 E7EMV2 128 137 NEFM Neurofilament medium polypeptide yes no 2 0.00042066 75.109 By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 1.1599 1.1734 35.389 8 Median 1.7097 1.731 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.911 0.89412 45.822 2 1 Median NaN NaN NaN 0 0 Median 1.2531 1.2223 17.705 3 0 Median 1.0054 0.78094 0.76201 2 0 Median 100110000 42357000 57750000 1685700 330410 1355300 0 0 0 68477000 33836000 34641000 0 0 0 28582000 7604300 20978000 1362700 586720 776030 6609 859 6873 33463;33464;33465;33466;33467;33468;33469;33470 33597;33598;33599;33600;33601;33602 33602 6 EIEDFDSLEALR SLKLNTAEDAKDVIKEIEDFDSLEALRLEG VIKEIEDFDSLEALRLEGNTVGVEAARVIA K E I L R L 1 1 0 2 0 0 3 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 12 0 1435.6831 P46060;B0QYT5;B0QYT4 P46060 44 55 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0002496 84.17 By MS/MS By MS/MS By matching 2 2 1 0.95581 1.0103 65.4 5 Median NaN NaN NaN 0 0 Median 0.77947 0.67372 74.09 2 0 Median 1.2512 1.3856 44.677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5828 0.45931 NaN 1 0 Median 8845900 4352800 4493200 0 0 0 4524100 2246600 2277500 4208300 2030600 2177600 0 0 0 0 0 0 113610 75497 38110 6610 2336 6874 33471;33472;33473;33474;33475 33603;33604;33605;33606;33607 33604 5 EIEDPEDR GNLLNDMTPPVNPSREIEDPEDRKPEDWDE PPVNPSREIEDPEDRKPEDWDERPKIPDPE R E I D R K 0 1 0 2 0 0 3 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 8 0 1001.4302 P27824;D6RGY2 P27824 275 282 CANX Calnexin yes no 2 0.0028461 104.21 By MS/MS By MS/MS By MS/MS 1 2 1 0.95816 0.9017 4.2922 4 Median 0.88341 0.83579 NaN 1 0 Median 1.0411 0.9017 0.54963 2 0 Median 0.86521 0.92147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27887000 13909000 13978000 12703000 6635300 6067200 13086000 6175400 6910200 2098900 1097900 1001000 0 0 0 0 0 0 0 0 0 6611 2158 6875 33476;33477;33478;33479 33608;33609;33610;33611;33612;33613;33614;33615 33608 8 EIEEAMK AGLVSPSLKSDTSSKEIEEAMKRVREAQSL LKSDTSSKEIEEAMKRVREAQSLISAAIEP K E I M K R 1 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 7 0 848.39497 Q5T760;Q05519;Q5T757 Q5T760 218 224 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 0.027697 51.572 By MS/MS 1 1.012 1.0768 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.012 1.0768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3322700 1717100 1605500 0 0 0 0 0 0 3322700 1717100 1605500 0 0 0 0 0 0 0 0 0 6612 2717 6876 33480 33616 33616 1 EIEELKELLPEIR EQVKEAEGSSAEYKKEIEELKELLPEIREK KKEIEELKELLPEIREKIEDAKESQRSGNV K E I I R E 0 1 0 0 0 0 5 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 13 1 1609.8927 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 638 650 NASP Nuclear autoantigenic sperm protein yes no 2;3 2.3109E-21 193.96 By MS/MS By MS/MS 4 4 0.84202 0.85929 39.959 8 Median 0.82755 0.8303 3.3915 4 0 Median 1.4413 1.3981 53.689 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53594000 27081000 26514000 30305000 16203000 14102000 23289000 10878000 12411000 0 0 0 0 0 0 0 0 0 0 0 0 6613 2376 6877 33481;33482;33483;33484;33485;33486;33487;33488 33617;33618;33619;33620;33621;33622;33623;33624;33625;33626;33627;33628;33629;33630 33629 14 EIEELKQELIQAEIQNGVK REEKKLRVENAKLKKEIEELKQELIQAEIQ LKQELIQAEIQNGVKQIPFPSGTPLHANSM K E I V K Q 1 0 1 0 0 3 5 1 0 3 2 2 0 0 0 0 0 0 0 1 0 0 19 1 2210.1794 Q12904;D6R937 Q12904 58 76 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 3 5.3838E-25 120.63 By MS/MS 1 0.82769 0.74601 NaN 1 Median NaN NaN NaN 0 0 Median 0.82769 0.74601 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10171000 4852400 5318900 0 0 0 10171000 4852400 5318900 0 0 0 0 0 0 0 0 0 0 0 0 6614 2768 6878 33489 33631 33631 1 EIEELQSQAQALSQEGK KKQQMLENQMEVRKKEIEELQSQAQALSQE EELQSQAQALSQEGKSTDEVDSKRLTVQTK K E I G K S 2 0 0 0 0 4 4 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 17 0 1886.9222 Q01082;A0A087WUZ3 Q01082 1435 1451 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.7893E-65 240.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.0411 0.98404 11.606 8 Median 1.2474 1.2054 NaN 1 0 Median 1.1889 1.0498 5.2847 2 0 Median 0.81319 0.89251 NaN 1 0 Median 1.0411 0.95302 0.66922 2 0 Median 1.0027 1.0492 NaN 1 0 Median 0.9718 0.83527 NaN 1 0 Median 96743000 47503000 49240000 12532000 4775200 7757100 11526000 5459000 6066600 58876000 30799000 28077000 5240000 2465600 2774400 7849100 3653600 4195500 719810 350620 369190 6615 2681 6879 33490;33491;33492;33493;33494;33495;33496;33497 33632;33633;33634;33635;33636;33637;33638;33639;33640;33641;33642;33643;33644;33645;33646 33634 15 EIEELTQENGTLK LEKKEMSSIISLNKREIEELTQENGTLKEI KREIEELTQENGTLKEINASLNQEKMNLIQ R E I L K E 0 0 1 0 0 1 4 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 13 0 1502.7464 P49454 P49454 968 980 CENPF Centromere protein F yes yes 2 9.6816E-12 117.67 By MS/MS By MS/MS 2 1 1.1036 1.1122 5.2289 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99665 1.0718 NaN 1 1 Median 1.2221 1.154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6446200 3222900 3223300 0 0 0 0 0 0 5404200 2662100 2742100 1042000 560810 481240 0 0 0 0 0 0 6616 2383 6880 33498;33499;33500 33647;33648;33649 33648 3 EIEESKEPGVEDTEWSNTQTEEAIQTR NGGLKAKTITKKRKKEIEESKEPGVEDTEW TEWSNTQTEEAIQTRSRTRKRVQK______ K E I T R S 1 1 1 1 0 2 8 1 0 2 0 1 0 0 1 2 4 1 0 1 0 0 27 1 3134.4164 Q99986;H0YJF7 Q99986 361 387 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 5.2563E-61 189.62 By MS/MS By MS/MS By matching 2 1 1 0.65125 0.70872 8.7762 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63786 0.68732 8.0414 2 0 Median 0.83707 0.79886 NaN 1 0 Median 0.66391 0.69039 NaN 1 0 Median NaN NaN NaN 0 0 Median 152100000 79802000 72297000 0 0 0 0 0 0 128190000 67702000 60488000 20634000 10533000 10101000 3274600 1566900 1707700 0 0 0 6617 3775 6881 33501;33502;33503;33504 33650;33651;33652;33653;33654;33655 33651 6 EIEEYIHKPK VIYYKIRQQLAKLGKEIEEYIHKPKYCLPF AKLGKEIEEYIHKPKYCLPFLQPGRLVKVK K E I P K Y 0 0 0 0 0 0 3 0 1 2 0 2 0 0 1 0 0 0 1 0 0 0 10 1 1284.6714 P42285 P42285 639 648 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.0049454 38.567 By matching By matching By MS/MS 1 2 1 0.97469 0.89248 7.4591 4 Linear NaN NaN NaN 0 0 Median 0.97825 0.90964 NaN 1 0 Median 0.81325 0.93061 8.6109 2 0 Median 0.86932 0.82809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14854000 7727800 7126700 0 0 0 6172200 3071000 3101200 4599900 2237700 2362200 4082400 2419100 1663200 0 0 0 0 0 0 6618 2309 6882 33505;33506;33507;33508 33656 33656 1 EIEGEEIEIVLAKPPDKK DRGAAVKAMDEMNGKEIEGEEIEIVLAKPP GEEIEIVLAKPPDKKRKERQAARQASRSTA K E I K K R 1 0 0 1 0 0 5 1 0 3 1 3 0 0 2 0 0 0 0 1 0 0 18 2 2036.1041 O43390;B4DT28;A0A286YEZ8 O43390 398 415 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 4 0.0053432 25.158 By MS/MS By matching 1 1 0.7062 0.80175 10.804 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64247 0.74278 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77624 0.8654 NaN 1 0 Median NaN NaN NaN 0 0 Median 7869800 4332600 3537300 0 0 0 0 0 0 5327300 2893800 2433500 0 0 0 2542500 1438700 1103800 0 0 0 6619 1568 6883 33509;33510 33657 33657 1 EIEHVMYHDWR DASFSSSGKTESEAREIEHVMYHDWRLVPK SEAREIEHVMYHDWRLVPKHEEEAFTAFTP R E I W R L 0 1 0 1 0 0 2 0 2 1 0 0 1 0 0 0 0 1 1 1 0 0 11 0 1513.6772 C9JJ19;P82930 C9JJ19 137 147 MRPS34 28S ribosomal protein S34, mitochondrial yes no 3 0.00015247 67.153 By MS/MS By MS/MS 1 1 1.2423 1.1125 14.586 2 Median 1.0599 1.0035 NaN 1 0 Median 1.456 1.2334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10865000 4077400 6787100 7973100 2741900 5231200 2891400 1335500 1555900 0 0 0 0 0 0 0 0 0 0 0 0 6620 702 6884 33511;33512 33658;33659;33660 33659 3 EIELIGSGGFGQVFK ETKYTVDKRFGMDFKEIELIGSGGFGQVFK EIELIGSGGFGQVFKAKHRIDGKTYVIKRV K E I F K A 0 0 0 0 0 1 2 4 0 2 1 1 0 2 0 1 0 0 0 1 0 0 15 0 1579.8246 P19525 P19525 269 283 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00032492 53.683 By MS/MS By MS/MS By matching 1 2 1 0.89211 0.91223 15.778 4 Median NaN NaN NaN 0 0 Median 0.82918 0.71671 NaN 1 0 Median 0.89211 0.99482 0.098213 2 2 Median 0.98298 0.83708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3958700 2168700 1790000 0 0 0 1720600 1065200 655360 2003300 986440 1016900 234760 116970 117790 0 0 0 0 0 0 6621 2067 6885 33513;33514;33515;33516 33661;33662;33663;33664 33664 4 EIELPSGQLMGLFNR LGIGLQHKSVDQLEKEIELPSGQLMGLFNR EIELPSGQLMGLFNRIIRKVVKLFNEVQEK K E I N R I 0 1 1 0 0 1 2 2 0 1 3 0 1 1 1 1 0 0 0 0 0 0 15 0 1702.8712 Q9H0A0;A0A087WV29 Q9H0A0 883 897 NAT10 N-acetyltransferase 10 yes no 2 0.0003573 64.297 By matching By MS/MS By MS/MS 1 3 1 0.97687 1.0428 11.938 5 Median 1.27 1.2848 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94115 1.033 4.5968 3 0 Plateau NaN NaN NaN 0 0 Median 1.0787 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median 16917000 8445200 8472100 910070 388470 521600 0 0 0 13324000 6830300 6493800 0 0 0 2683100 1226400 1456700 0 0 0 6622 3921 6886;6887 33517;33518;33519;33520;33521 33665;33666;33667 33666 1848 3 EIELTHR LILDEQGRTVDATGKEIELTHRMPTLKANI RTVDATGKEIELTHRMPTLKANIRAVKREQ K E I H R M 0 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 896.47158 O43395 O43395 271 277 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.020057 60.788 By matching By MS/MS By MS/MS 1 1 1 1.3 1.1696 29.356 3 Plateau 0.68543 0.68512 NaN 1 0 Median 1.3 1.1696 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2964 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1632400 733580 898830 111340 54364 56973 1005600 479510 526100 0 0 0 515460 199700 315760 0 0 0 0 0 0 6623 1569 6888 33522;33523;33524 33668;33669;33670 33670 3 EIEMASEERPPAQALEIMMGLK AEPPQPTAVPLELAKEIEMASEERPPAQAL ERPPAQALEIMMGLKTTDMAPSKETEMALA K E I L K T 3 1 0 0 0 1 5 1 0 2 2 1 3 0 2 1 0 0 0 0 0 0 22 1 2472.2063 E7EVA0;P27816;H7C456 E7EVA0 242 263 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.01021 20.814 By MS/MS By MS/MS 2 1 0.65325 0.66485 40.533 3 Median 0.65138 0.66126 0.76591 2 0 Median NaN NaN NaN 0 0 Median 1.1775 1.3343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12550000 6206700 6343800 4064600 2416100 1648400 0 0 0 8485900 3790500 4695300 0 0 0 0 0 0 0 0 0 6624 895 6889 33525;33526;33527 33671;33672;33673;33674;33675 33671 5 EIEMSVDDDDINSSK VTSDPKVEQKIEVIREIEMSVDDDDINSSK EIEMSVDDDDINSSKVINDLFSDVLEEGEL R E I S K V 0 0 1 4 0 0 2 0 0 2 0 1 1 0 0 3 0 0 0 1 0 0 15 0 1695.7145 Q9NQW6 Q9NQW6 549 563 ANLN Actin-binding protein anillin yes yes 2 3.0329E-10 149.38 By MS/MS By MS/MS 1 1 0.98468 0.9381 21.809 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0184 1.0945 NaN 1 0 Median 0.95204 0.80403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8774800 4040900 4733900 0 0 0 0 0 0 7063500 3252600 3810900 1711300 788320 923010 0 0 0 0 0 0 6625 4069 6890 33528;33529 33676;33677 33677 2 EIENEDMR ELMRLGLHQVLQDLREIENEDMRVQLNVFD QVLQDLREIENEDMRVQLNVFDEQGEEDSY R E I M R V 0 1 1 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 8 0 1034.4339 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 352 359 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0033382 98.997 By MS/MS By MS/MS By matching 1 1 1 1.1067 0.96433 8.2354 3 Median 0.86653 0.86585 NaN 1 0 Median 1.2129 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1067 0.96433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8385500 3903700 4481900 756320 440340 315980 7424900 3363900 4061000 0 0 0 204280 99445 104840 0 0 0 0 0 0 6626 274 6891 33530;33531;33532 33678;33679;33680;33681 33681 4 EIENQKTDAASKPFAEVR HVVFGQVISGQEVVREIENQKTDAASKPFA NQKTDAASKPFAEVRILSCGELIPKSKVKK R E I V R I 3 1 1 1 0 1 3 0 0 1 0 2 0 1 1 1 1 0 0 1 0 0 18 2 2032.0225 C9JN15;C9JM79;Q13427;E9PG73 C9JN15 153 170 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 3;4 0.0012036 29.687 By MS/MS 2 0.78189 0.9214 1.0396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78189 0.9214 1.0396 2 0 Median NaN NaN NaN 0 0 Median 7063400 4172800 2890600 0 0 0 0 0 0 0 0 0 0 0 0 7063400 4172800 2890600 0 0 0 6627 709 6892 33533;33534 33682;33683 33683 2 EIEQEAAVELSQLR KWRGKPLFVRHRTQKEIEQEAAVELSQLRD KEIEQEAAVELSQLRDPQHDLDRVKKPEWV K E I L R D 2 1 0 0 0 2 4 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1613.8261 P47985 P47985 183 196 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 2 0.00052445 68.069 By MS/MS By matching By matching 1 1 1 1.0106 0.95578 15.081 3 Median 1.0106 0.95578 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76251 0.86886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4402 1.1676 NaN 1 0 Median 9257300 4200600 5056700 6887800 3211300 3676500 0 0 0 1441900 521280 920620 0 0 0 0 0 0 927660 468030 459630 6628 2357 6893 33535;33536;33537 33684 33684 1 EIEQEAAVELSQLRDPQHDLDR KWRGKPLFVRHRTQKEIEQEAAVELSQLRD VELSQLRDPQHDLDRVKKPEWVILIGVCTH K E I D R V 2 2 0 3 0 3 4 0 1 1 3 0 0 0 1 1 0 0 0 1 0 0 22 1 2590.2623 P47985 P47985 183 204 UQCRFS1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11 yes yes 4 0.0012745 35.436 By MS/MS 1 0.9725 1.0395 NaN 1 Median 0.9725 1.0395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6399800 3385100 3014700 6399800 3385100 3014700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6629 2357 6894 33538 33685 33685 1 EIESEIDSEEELINK ESALKRSELVNWYLKEIESEIDSEEELINK EIESEIDSEEELINKKRIIEKVIHRLTHYD K E I N K K 0 0 1 1 0 0 6 0 0 3 1 1 0 0 0 2 0 0 0 0 0 0 15 0 1775.8313 Q14566 Q14566 755 769 MCM6 DNA replication licensing factor MCM6 yes yes 2 2.4251E-09 115.18 By MS/MS By matching By MS/MS 1 2 1 0.77498 0.79631 54.46 4 Median 0.7895 0.7636 NaN 1 0 Median 1.0361 0.89536 93.409 2 0 Median 0.76073 0.83043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30124000 16484000 13639000 12362000 6572100 5789600 7155200 3893200 3262000 10607000 6019100 4587400 0 0 0 0 0 0 0 0 0 6630 2881 6895 33539;33540;33541;33542 33686;33687;33688;33689 33686 4 EIETFVSLLR LHNNRKLLEKHITAKEIETFVSLLRRNREP HITAKEIETFVSLLRRNREPRFLDYLSDLC K E I L R R 0 1 0 0 0 0 2 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 10 0 1205.6656 Q14571 Q14571 614 623 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 2 0.030718 47.198 By MS/MS 1 1.4598 1.4753 NaN 1 Median 1.4598 1.4753 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945500 654260 1291200 1945500 654260 1291200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6631 2882 6896 33543 33690 33690 1 EIETLVEEK ETAVRISQEIGNLMKEIETLVEEKTKESLD IGNLMKEIETLVEEKTKESLDVSRLTREGG K E I E K T 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1088.5601 Q32P28;H7C2W6 Q32P28 427 435 LEPRE1 Prolyl 3-hydroxylase 1 yes no 2 0.036355 69.825 By MS/MS By matching 1 1 0.93926 0.9652 20.643 2 Median 1.1675 1.1169 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75565 0.83411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8712100 4327900 4384300 3814000 1631000 2183000 0 0 0 4898100 2696800 2201300 0 0 0 0 0 0 0 0 0 6632 3007 6897 33544;33545 33691 33691 0 EIETTGQIMHR SQKDEESSEGTHHAKEIETTGQIMHRAENR HHAKEIETTGQIMHRAENRKKFLRSIIKTT K E I H R A 0 1 0 0 0 1 2 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 11 0 1313.6398 A0A590UJS4;Q6KC79 A0A590UJS4 1709 1719 NIPBL Nipped-B-like protein yes no 2;3 0.00017071 107.47 By MS/MS By MS/MS By matching 3 2 1 1.1815 1.2297 32.184 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87187 0.97777 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.167 1.2199 45.338 2 0 Median 1.8553 1.5466 NaN 1 0 Median 13086000 6623600 6462900 0 0 0 0 0 0 1561100 812810 748310 0 0 0 9994400 5196500 4797800 1530900 614230 916710 6633 488 6898 33546;33547;33548;33549;33550;33551 33692;33693;33694;33695;33696 33694 5 EIETYHNLLEGGQEDFESSGAGK QEYSLLLSIKMRLEKEIETYHNLLEGGQED LEGGQEDFESSGAGKIGLGGRGGSGGSYGR K E I G K I 1 0 1 1 0 1 5 4 1 1 2 1 0 1 0 2 1 0 1 0 0 0 23 0 2509.1245 P35527;CON__P35527;K7EQQ3 P35527 450 472 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 5.7769E-187 255.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 3 13 10 10 0.019349 0.018597 111.7 34 Median 0.017356 0.015632 120.26 10 10 Median 0.034028 0.02862 122.66 3 3 Median 0.026323 0.027042 99.961 10 10 Median 0.0073591 0.0066237 86.449 7 7 Median 0.0055514 0.0059049 102.42 4 4 Median NaN NaN NaN 0 0 Median 1478400000 1467100000 11251000 686490000 681100000 5386400 31379000 31152000 226740 367690000 363710000 3977900 62166000 61848000 318610 330630000 329290000 1341400 0 0 0 + 6634 2242 6899 33552;33553;33554;33555;33556;33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567;33568;33569;33570;33571;33572;33573;33574;33575;33576;33577;33578;33579;33580;33581;33582;33583;33584;33585;33586;33587;33588;33589;33590;33591;33592;33593;33594;33595;33596;33597;33598;33599;33600;33601;33602 33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707;33708;33709;33710;33711;33712;33713;33714;33715;33716;33717;33718;33719;33720;33721;33722;33723;33724;33725;33726;33727;33728;33729;33730;33731;33732;33733;33734;33735;33736;33737;33738;33739;33740;33741;33742;33743;33744;33745;33746;33747;33748;33749;33750;33751 33728 55 EIEVGGGR DLKAQLRELNITAAKEIEVGGGRKAIIIFV LNITAAKEIEVGGGRKAIIIFVPVPQLKSF K E I G R K 0 1 0 0 0 0 2 3 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 815.41373 P62081;B5MCP9 P62081 50 57 RPS7 40S ribosomal protein S7 yes no 2 0.0035672 88.35 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1.2781 1.07 9.7185 7 Median 1.13 1.07 NaN 1 0 Median 1.1355 0.96382 NaN 1 0 Median 1.2275 1.1795 NaN 1 0 Median 1.28 1.0846 3.0707 2 0 Median 1.3432 1.3057 NaN 1 0 Median 1.2868 1.0428 NaN 1 0 Median 23800000 10623000 13178000 8105400 3731700 4373800 2075900 948430 1127400 9514200 4178300 5335900 2460600 1045000 1415700 885500 384770 500720 758790 334350 424440 6635 2568 6900 33603;33604;33605;33606;33607;33608;33609 33752;33753;33754;33755;33756;33757;33758;33759;33760;33761;33762 33759 11 EIEVPDQYGTIR DRKIILWDHDLNPEREIEVPDQYGTIRAVA PEREIEVPDQYGTIRAVAEGKADQFLVGTS R E I I R A 0 1 0 1 0 1 2 1 0 2 0 0 0 0 1 0 1 0 1 1 0 0 12 0 1418.7042 Q9HC35;B5MBZ0 Q9HC35 545 556 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 3.0793E-06 152.97 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.0113 0.8419 41.967 7 Median 0.7294 0.74469 17.351 2 0 Median 0.96983 0.79822 5.9408 2 2 Median 1.1124 1.184 NaN 1 0 Median 1.2758 1.1067 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1762 2.322 NaN 1 0 Median 44166000 23048000 21118000 20263000 10786000 9477500 15924000 7828200 8096100 7035200 3960300 3074900 337150 145440 191720 0 0 0 606390 328400 277990 6636 4024 6901 33610;33611;33612;33613;33614;33615;33616 33763;33764;33765;33766;33767;33768 33766 6 EIEYEVVR HTSQVLVDKSLKGWKEIEYEVVRDAYGNCV KSLKGWKEIEYEVVRDAYGNCVTYYIIEVN K E I V R D 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 1035.5237 F8VPD4;P27708;P31327 F8VPD4 599 606 CAD;CPS1 CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase;Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.0048619 79.116 By MS/MS By MS/MS 1 2 1.145 0.97333 13.9 3 Median 1.2166 1.1432 NaN 1 1 Median 0.98484 0.91851 8.1981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29778000 13785000 15993000 9658000 3732700 5925300 20120000 10053000 10068000 0 0 0 0 0 0 0 0 0 0 0 0 6637 1057 6902 33617;33618;33619 33769;33770;33771 33770 3 EIEYVETVTSR RKSQGSRNALKYEHKEIEYVETVTSRQSEI YEHKEIEYVETVTSRQSEIQKFIADGCKEA K E I S R Q 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 1 2 0 1 2 0 0 11 0 1324.6511 Q9UHR4 Q9UHR4 160 170 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 3.3235E-05 121.73 By MS/MS By MS/MS By matching 1 2 1 1.2599 1.0758 42.623 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0484 1.0591 NaN 1 1 Median 1.2599 1.0537 5.143 2 0 Median NaN NaN NaN 0 0 Median 3.0483 2.4704 NaN 1 0 Median 12684000 5838100 6846300 0 0 0 0 0 0 8791300 4244100 4547200 3289900 1428900 1860900 0 0 0 603290 165100 438180 6638 4281 6903 33620;33621;33622;33623 33772;33773;33774 33772 3 EIFEQPESVVNTMR LQQIMKGNFSSFMQKEIFEQPESVVNTMRG KEIFEQPESVVNTMRGRVNFDDYTVNLGGL K E I M R G 0 1 1 0 0 1 3 0 0 1 0 0 1 1 1 1 1 0 0 2 0 0 14 0 1677.8032 Q06210 Q06210 346 359 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 1.2583E-09 146.16 By MS/MS By matching 2 1 1.055 0.99758 52.988 3 Median 1.1856 1.1248 16.973 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50761 0.46009 NaN 1 0 Median 35742000 15460000 20282000 35147000 15123000 20024000 0 0 0 0 0 0 0 0 0 0 0 0 595170 337440 257740 6639 2723 6904;6905 33624;33625;33626 33775;33776;33777;33778 33778 1408 4 EIFGLYGQTTGK NKIDRTDAISEEKLREIFGLYGQTTGKGNV KLREIFGLYGQTTGKGNVTLKELNARPMEV R E I G K G 0 0 0 0 0 1 1 3 0 1 1 1 0 1 0 0 2 0 1 0 0 0 12 0 1312.6663 Q9NR31;H0Y5E8 Q9NR31 149 160 SAR1A GTP-binding protein SAR1a yes no 2 1.963E-07 134.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 2 1.3471 1.1102 51.053 8 Median 1.0391 0.9593 NaN 1 0 Median 1.2146 1.023 1.4931 2 0 Median 1.5528 1.4554 NaN 1 0 Median 1.2697 1.0473 NaN 1 0 Median 4.0562 4.5232 NaN 1 1 Median 1.4559 1.2257 5.7508 2 0 Median 98257000 42715000 55541000 57287000 27116000 30171000 14321000 6388100 7932500 13057000 4976800 8080500 668710 280050 388660 10147000 2829700 7317600 2775600 1124800 1650800 6640 4077 6906 33627;33628;33629;33630;33631;33632;33633;33634 33779;33780;33781;33782;33783;33784;33785;33786 33783 8 EIFITFR GVEDGQTVRMPVGKREIFITFRVQKSPVFR VRMPVGKREIFITFRVQKSPVFRRDGADIH R E I F R V 0 1 0 0 0 0 1 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 7 0 924.5069 Q96EY1 Q96EY1 326 332 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 0.014908 73.039 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 2 1.4841 1.3529 8.0857 9 Median 1.3009 1.27 16.436 2 0 Median NaN NaN NaN 0 0 Median 1.3047 1.3434 7.0415 2 0 Median 1.6058 1.3529 NaN 1 0 Median 1.3609 1.3884 5.3542 2 0 Median 1.6232 1.3553 9.3981 2 0 Median 12610000 5352000 7258100 3907400 1900900 2006500 0 0 0 4221200 1733900 2487300 259970 107030 152940 2519300 1006900 1512400 1702400 603340 1099000 6641 3643 6907 33635;33636;33637;33638;33639;33640;33641;33642;33643 33787;33788;33789;33790;33791 33790 5 EIFLSQPILLELEAPLK QLTENEIRGLCLKSREIFLSQPILLELEAP FLSQPILLELEAPLKICGDIHGQYYDLLRL R E I L K I 1 0 0 0 0 1 3 0 0 2 5 1 0 1 2 1 0 0 0 0 0 0 17 0 1952.1234 P62140;E7ETD8;C9J9S3;C9JP48;F8WE71;P62136;E9PMD7;F5H1L6;F5H037;F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 P62136 44 60 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.00065366 39.148 By matching By MS/MS 1 3 0.6893 0.70176 4.8712 4 Median NaN NaN NaN 0 0 Median 0.85507 0.72872 NaN 1 0 Median 0.73077 0.70309 4.5125 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11513000 6516000 4996800 0 0 0 1106500 577820 528650 10406000 5938200 4468200 0 0 0 0 0 0 0 0 0 6642 2569;1074;2570 6908 33644;33645;33646;33647 33792;33793 33793 2 EIFLTVPVGGGESLR IYNISGNGSPLADSKEIFLTVPVGGGESLR EIFLTVPVGGGESLRLLASDLQRHSIAQLD K E I L R L 0 1 0 0 0 0 2 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 15 0 1572.8512 Q53HL2 Q53HL2 226 240 CDCA8 Borealin yes yes 2 7.4307E-05 82.171 By MS/MS 1 0.81915 0.66482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81915 0.66482 NaN 1 0 Median 6340300 3294100 3046200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6340300 3294100 3046200 6643 3033 6909 33648 33794;33795 33795 2 EIFMQVEDER AAANKLVRRTEKKLKEIFMQVEDERRHADQ EKKLKEIFMQVEDERRHADQYKEQMEKANA K E I E R R 0 1 0 1 0 1 3 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 10 0 1294.5864 P35580 P35580 1853 1862 MYH10 Myosin-10 yes yes 2 0.0018057 80.239 By MS/MS 2 1.2987 1.0922 5.7452 2 Median NaN NaN NaN 0 0 Median 1.2987 1.0922 5.7452 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3781400 1598100 2183300 0 0 0 3781400 1598100 2183300 0 0 0 0 0 0 0 0 0 0 0 0 6644 2245 6910 33649;33650 33796;33797 33796 2 EIFMQVEDERR AAANKLVRRTEKKLKEIFMQVEDERRHADQ KKLKEIFMQVEDERRHADQYKEQMEKANAR K E I R R H 0 2 0 1 0 1 3 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 11 1 1450.6875 P35580 P35580 1853 1863 MYH10 Myosin-10 yes yes 2;3 5.0037E-08 133.57 By MS/MS By MS/MS By MS/MS 3 3 1 1.0492 1.122 65.122 7 Median 1.2053 1.289 18.951 3 1 Plateau 1.3419 1.3551 106.24 3 0 Median 0.65318 0.82512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55269000 25149000 30121000 33545000 13822000 19724000 15834000 7823500 8010300 5890300 3503400 2386900 0 0 0 0 0 0 0 0 0 6645 2245 6911 33651;33652;33653;33654;33655;33656;33657 33798;33799;33800;33801;33802;33803;33804;33805 33800 8 EIFNFVLK CNFTKSMEEDPQTSREIFNFVLKAIRPQID EDPQTSREIFNFVLKAIRPQIDLKRYAVPS R E I L K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 P78527 P78527 247 254 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.008475 62.714 By MS/MS By matching By MS/MS By matching By matching By matching 2 3 2 2 3 2 1.4622 1.3043 14.322 13 Median 1.286 1.264 9.6909 2 0 Median 1.4966 1.3043 1.4728 3 0 Median 1.1009 1.1692 NaN 1 0 Median 1.5951 1.4299 9.9427 2 0 Median 1.2553 1.2981 21.854 3 0 Median 1.7361 1.4746 20.216 2 0 Median 171020000 79614000 91407000 38522000 17739000 20784000 28760000 12152000 16608000 96089000 46371000 49718000 736000 263430 472570 5220000 2447400 2772600 1693600 642030 1051500 6646 2647 6912 33658;33659;33660;33661;33662;33663;33664;33665;33666;33667;33668;33669;33670;33671 33806;33807;33808;33809;33810;33811;33812 33806 7 EIFQTTVPYMVER HFAGVFTMMNPLTFKEIFQTTVPYMVERIS FKEIFQTTVPYMVERISKNYALQIVANSFL K E I E R I 0 1 0 0 0 1 2 0 0 1 0 0 1 1 1 0 2 0 1 2 0 0 13 0 1611.7967 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 648 660 TRRAP Transformation/transcription domain-associated protein yes no 2 6.4335E-05 127.42 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.94518 0.87397 5.2178 4 Median NaN NaN NaN 0 0 Median 0.97764 0.84892 NaN 1 0 Median 0.84503 0.88411 NaN 1 0 Median 0.99303 0.86394 NaN 1 0 Median 0.9138 0.95553 NaN 1 0 Median NaN NaN NaN 0 0 Median 36023000 19318000 16705000 0 0 0 500480 283720 216760 32909000 17736000 15173000 857880 402360 455520 1755200 895320 859850 0 0 0 6647 991 6913 33672;33673;33674;33675 33813;33814;33815;33816 33814 4 EIFVDFAPFLSR ERLEHALEKAAPLLREIFVDFAPFLSRTLL LLREIFVDFAPFLSRTLLGSHGQELLIEGT R E I S R T 1 1 0 1 0 0 1 0 0 1 1 0 0 3 1 1 0 0 0 1 0 0 12 0 1439.7449 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A494C0R9;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 E9PEM5 1813 1824 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 2 0.00081714 60.518 By MS/MS By matching 2 1 0.96655 0.97324 13.566 3 Median 0.89064 0.88931 12.754 2 0 Median 1.2597 1.0599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6210200 2827100 3383100 4255200 1991700 2263400 1955000 835380 1119600 0 0 0 0 0 0 0 0 0 0 0 0 6648 470 6914 33676;33677;33678 33817;33818 33818 2 EIGDVENWAR GQWIGMVENFNQALKEIGDVENWARSIELD NQALKEIGDVENWARSIELDMRTIATALEY K E I A R S 1 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 10 0 1187.5571 G8JLQ3;P78537 G8JLQ3 40 49 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 2 0.027288 48.794 By MS/MS 1 0.76438 0.7751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76438 0.7751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4342300 3038500 1303700 0 0 0 0 0 0 4342300 3038500 1303700 0 0 0 0 0 0 0 0 0 6649 1137 6915 33679 33819 33819 1 EIGDYIR THYTPLACGSNPLKREIGDYIRTGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH R E I I R T 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 7 0 864.43413 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 82 88 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.012521 88.734 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 3 1 1.2859 1.2314 12.176 8 Median NaN NaN NaN 0 0 Median 1.405 1.2314 1.535 2 0 Median 0.91186 0.9109 NaN 1 1 Median 1.2512 1.0768 NaN 1 0 Median 1.2788 1.2526 6.1411 3 1 Median 1.4748 1.2697 NaN 1 0 Median 32412000 14924000 17489000 0 0 0 1475800 494830 980950 12649000 6599600 6049600 1859300 838560 1020700 12451000 5448100 7002900 3977100 1542700 2434400 6650 1634 6916 33680;33681;33682;33683;33684;33685;33686;33687 33820;33821;33822 33820 3 EIGELTQLK QILSLRDNDLISLPKEIGELTQLKELHIQG LISLPKEIGELTQLKELHIQGNRLTVLPPE K E I L K E 0 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 Q15404 Q15404 175 183 RSU1 Ras suppressor protein 1 yes yes 2 0.0045081 73.208 By MS/MS By MS/MS By matching 3 2 1 1.1153 1.0734 10.051 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1884 1.1148 2.5053 3 2 Plateau NaN NaN NaN 0 0 Median 0.88738 0.92304 10.503 2 0 Median 1.3499 1.1095 NaN 1 0 Median 47861000 22087000 25774000 0 0 0 0 0 0 34812000 16043000 18769000 0 0 0 6899800 3604900 3294900 6149400 2439500 3709900 6651 2949 6917 33688;33689;33690;33691;33692;33693 33823;33824;33825;33826;33827 33825 5 EIGFINYYGMQR TGTDDQVQQAMNSLKEIGFINYYGMQRFGT SLKEIGFINYYGMQRFGTTAVPTYQVGRAI K E I Q R F 0 1 1 0 0 1 1 2 0 2 0 0 1 1 0 0 0 0 2 0 0 0 12 0 1489.7024 Q96PZ0;E7EUH7 Q96PZ0 368 379 PUS7 Pseudouridylate synthase 7 homolog yes no 2 0.00073585 90.657 By MS/MS 2 0.86275 0.8512 1.0435 2 Median 0.86275 0.8512 1.0435 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4354200 2235800 2118400 4354200 2235800 2118400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6652 3716 6918 33694;33695 33828;33829 33829 2 EIGGDVQK SLLAGPVAEYLKISKEIGGDVQKHAEMVHT EYLKISKEIGGDVQKHAEMVHTGLKLERAL K E I Q K H 0 0 0 1 0 1 1 2 0 1 0 1 0 0 0 0 0 0 0 1 0 0 8 0 844.42905 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 64 71 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2 0.031031 38.792 By matching By MS/MS 1 1 1.2061 1.1186 12.898 2 Median 1.2432 1.2254 NaN 1 0 Median 1.1701 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537200 689400 847760 359010 152980 206030 1178200 536420 641730 0 0 0 0 0 0 0 0 0 0 0 0 6653 2686 6919 33696;33697 33830;33831 33830 2 EIGGLTQVNK GRKPLDLYRLYVSVKEIGGLTQVNKNKKWR YVSVKEIGGLTQVNKNKKWRELATNLNVGT K E I N K N 0 0 1 0 0 1 1 2 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1057.5768 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1060 1069 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.00056117 93.143 By MS/MS 1 1.1406 1.2602 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1406 1.2602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10186000 4676000 5510400 0 0 0 0 0 0 10186000 4676000 5510400 0 0 0 0 0 0 0 0 0 6654 1480 6920 33698 33832;33833 33833 2 EIGHGSFGAVYFAR LFFKEDPEKLFTDLREIGHGSFGAVYFARD REIGHGSFGAVYFARDVRTNEVVAIKKMSY R E I A R D 2 1 0 0 0 0 1 3 1 1 0 0 0 2 0 1 0 0 1 1 0 0 14 0 1509.7365 Q7L7X3;J3QS76;Q9UL54 Q7L7X3 33 46 TAOK1;TAOK2 Serine/threonine-protein kinase TAO1;Serine/threonine-protein kinase TAO2 yes no 2;3 0.00028013 52.278 By MS/MS By MS/MS By matching 2 1 1 1.2137 1.1803 27.043 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3196 1.4508 16.393 2 0 Median 1.2541 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0143 0.86139 NaN 1 0 Median 9851500 4139100 5712400 0 0 0 0 0 0 9195000 3860600 5334400 552340 227370 324970 0 0 0 104190 51126 53060 6655 3227 6921 33699;33700;33701;33702 33834;33835;33836;33837 33835 4 EIGLLSEEVELYGETK ISRSCKPKPIGKLAREIGLLSEEVELYGET IGLLSEEVELYGETKAKVLLSALERLKHRP R E I T K A 0 0 0 0 0 0 5 2 0 1 3 1 0 0 0 1 1 0 1 1 0 0 16 0 1807.9091 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 337 352 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00045389 46.592 By MS/MS By MS/MS 1 2 1.055 1.0314 47.274 3 Median 1.055 1.0322 NaN 1 0 Median 0.78088 0.68503 57.871 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18661000 9046400 9614400 4492200 2012700 2479500 14169000 7033700 7134900 0 0 0 0 0 0 0 0 0 0 0 0 6656 1968 6922 33703;33704;33705 33838;33839;33840 33840 3 EIGNIISDAMK EEIAQVATISANGDKEIGNIISDAMKKVGR NGDKEIGNIISDAMKKVGRKGVITVKDGKT K E I M K K 1 0 1 1 0 0 1 1 0 3 0 1 1 0 0 1 0 0 0 0 0 0 11 0 1189.6013 P10809;E7ESH4;E7EXB4 P10809 181 191 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0023898 53.756 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.2566 1.072 15.501 5 Median 1.1143 1.0397 NaN 1 0 Median 1.2566 1.0447 NaN 1 0 Median 1.1093 1.072 NaN 1 0 Median 1.5206 1.3182 18.582 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102740000 45884000 56860000 23725000 10728000 12997000 45712000 19857000 25855000 31785000 14661000 17124000 1522800 638420 884410 0 0 0 0 0 0 6657 1947 6923 33706;33707;33708;33709;33710 33841;33842;33843;33844 33844 4 EIGNIISDAMKK EEIAQVATISANGDKEIGNIISDAMKKVGR GDKEIGNIISDAMKKVGRKGVITVKDGKTL K E I K K V 1 0 1 1 0 0 1 1 0 3 0 2 1 0 0 1 0 0 0 0 0 0 12 1 1317.6962 P10809;E7ESH4;E7EXB4 P10809 181 192 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.026699 51.092 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6658 1947 6924 33711 33845 33845 1 EIGNLLHPSVPISNDEDVDNKVER AERIKLEAERFENLREIGNLLHPSVPISND VPISNDEDVDNKVERIWGDCTVRKKYSHVD R E I E R I 0 1 3 3 0 0 3 1 1 2 2 1 0 0 2 2 0 0 0 3 0 0 24 1 2688.3355 Q5T5C7;P49591 Q5T5C7 134 157 SARS Serine--tRNA ligase, cytoplasmic yes no 3;4 1.7366E-12 60.398 By MS/MS By matching By matching 2 1 2 0.76841 0.72106 31.592 5 Median 0.92622 0.93323 14.388 2 0 Median NaN NaN NaN 0 0 Median 0.42569 0.45977 NaN 1 0 Median 0.68897 0.64652 15.432 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16353000 9176500 7176300 8729000 4268300 4460700 0 0 0 5689400 3922500 1766900 1934500 985730 948760 0 0 0 0 0 0 6659 2387 6925 33712;33713;33714;33715;33716 33846;33847 33846 2 EIGQSVDEVEK AEAWLLGQEPYLSSREIGQSVDEVEKLIKR LSSREIGQSVDEVEKLIKRHEAFEKSAATW R E I E K L 0 0 0 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 0 11 0 1231.5932 Q01082;A0A087WUZ3 Q01082 2044 2054 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00016475 104.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 3 1.0274 1.0383 72.35 13 Median 3.3534 3.5775 164.47 2 0 Median 1.2115 1.0753 NaN 1 0 Median 0.81658 0.89403 27.843 3 0 Median 0.97758 0.91264 0.94299 2 0 Median 1.2435 1.2926 30.983 2 0 Median 1.3918 1.1477 31.553 3 1 Median 220820000 108360000 112460000 24234000 7953000 16281000 3875900 1781500 2094300 125680000 66623000 59058000 30058000 14486000 15572000 23377000 11637000 11740000 13591000 5879000 7712400 6660 2681 6926 33717;33718;33719;33720;33721;33722;33723;33724;33725;33726;33727;33728;33729 33848;33849;33850;33851;33852;33853;33854;33855;33856;33857;33858;33859;33860;33861;33862;33863;33864;33865;33866 33848 19 EIGSINLKK TSRPTDNILIPQLIREIGSINLKKNEPPLT IPQLIREIGSINLKKNEPPLTCPYSLKARV R E I K K N 0 0 1 0 0 0 1 1 0 2 1 2 0 0 0 1 0 0 0 0 0 0 9 1 1000.5917 Q9UGP8 Q9UGP8 280 288 SEC63 Translocation protein SEC63 homolog yes yes 2 0.040854 36.701 By matching By matching By matching By MS/MS 1 2 2 3 1.2499 1.0969 27.176 8 Median NaN NaN NaN 0 0 Median 1.6211 1.4609 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7967 1.5419 45.656 2 0 Median 0.94695 1.0108 7.4601 2 0 Median 1.2286 1.0777 21.785 3 0 Median 152310000 74106000 78200000 0 0 0 876720 329010 547720 0 0 0 4571500 1841900 2729600 104200000 52512000 51688000 42658000 19423000 23235000 6661 4264 6927 33730;33731;33732;33733;33734;33735;33736;33737 33867 33867 1 EIGSTMSGR AIVFTDVKRPGYRVKEIGSTMSGRKGTDDS PGYRVKEIGSTMSGRKGTDDSMTLQSQKFQ K E I G R K 0 1 0 0 0 0 1 2 0 1 0 0 1 0 0 2 1 0 0 0 0 0 9 0 936.43348 O00422;H7BZW6 O00422 105 113 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 0.01817 41.029 By matching By MS/MS 1 1 1.1485 1.0454 0.90923 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99819 1.0522 NaN 1 0 Median 1.3214 1.0387 NaN 1 0 Median 834040 385540 448500 0 0 0 0 0 0 0 0 0 0 0 0 477240 215390 261850 356810 170150 186660 6662 1253 6928 33738;33739 33868 33868 1 EIGWTDVGGWTGQGGSILGTK AIYDGFDGFAKGQIKEIGWTDVGGWTGQGG VGGWTGQGGSILGTKRVLPGKYLEEIATQM K E I T K R 0 0 0 1 0 1 1 7 0 2 1 1 0 0 0 1 3 2 0 1 0 0 21 0 2118.0382 Q01813;B1APP6;H0Y3Y3 Q01813 460 480 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0012851 38.366 By MS/MS By MS/MS 2 1 1.1773 1.0694 9.456 3 Median 1.1867 1.1249 7.1571 2 1 Median 1.1152 0.97955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16801000 7653700 9146900 13473000 6148000 7324700 3327900 1505700 1822200 0 0 0 0 0 0 0 0 0 0 0 0 6663 2692 6929 33740;33741;33742 33869;33870;33871;33872 33871 4 EIGWTDVGGWTGQGGSILGTKR AIYDGFDGFAKGQIKEIGWTDVGGWTGQGG GGWTGQGGSILGTKRVLPGKYLEEIATQMR K E I K R V 0 1 0 1 0 1 1 7 0 2 1 1 0 0 0 1 3 2 0 1 0 0 22 1 2274.1393 Q01813;B1APP6;H0Y3Y3 Q01813 460 481 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 0.055604 15.506 By MS/MS 1 1.1058 1.1292 NaN 1 Median 1.1058 1.1292 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1876200 962920 913260 1876200 962920 913260 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6664 2692 6930 33743 33873 33873 1 EIHKPGYLANDR LASYAVQAKYGDYNKEIHKPGYLANDRLLP YNKEIHKPGYLANDRLLPQRVLEQHKLTKE K E I D R L 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 12 1 1411.7208 P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3;A0A2R8Y5P0 P35241 140 151 RDX Radixin yes no 2;3 0.00030977 58.674 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 1.0243 0.97689 12.535 8 Median 0.73552 0.75423 NaN 1 0 Median 1.0143 1.0147 6.1239 3 0 Median 0.74546 0.79234 NaN 1 0 Median 1.045 0.97956 3.5545 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49789000 23917000 25873000 4465200 2564500 1900700 18702000 8522100 10180000 14461000 7318100 7142600 12162000 5512000 6649600 0 0 0 0 0 0 6665 2235 6931 33744;33745;33746;33747;33748;33749;33750;33751 33874;33875;33876;33877;33878;33879;33880;33881;33882;33883;33884;33885;33886;33887;33888 33884 15 EIHQFNR LEPLNERKHNLLASKEIHQFNRDVEDEILW KHNLLASKEIHQFNRDVEDEILWVGERMPL K E I N R D 0 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 942.46716 Q01082;A0A087WUZ3 Q01082 1486 1492 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.037411 46.351 By MS/MS 1 0.88699 0.98654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88699 0.98654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1091900 571800 520080 0 0 0 0 0 0 1091900 571800 520080 0 0 0 0 0 0 0 0 0 6666 2681 6932 33752 33889 33889 1 EIIDLVLDR DAANNYARGHYTIGKEIIDLVLDRIRKLAD HYTIGKEIIDLVLDRIRKLADQCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;P68363;Q71U36;F8VQQ4 P68363 113 121 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 2 0.00015075 144.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 4 3 5 4 1.2417 1.0854 27.636 29 Median 1.0756 1.0223 7.2087 6 1 Median 1.2075 1.0449 7.8041 7 0 Median 1.234 1.236 10.039 4 0 Median 1.2514 1.0743 7.6988 3 0 Median 2.0174 2.0112 18.112 5 0 Median 1.3156 1.0319 6.5844 4 0 Median 4167500000 1883800000 2283700000 1179200000 557790000 621410000 1645300000 738610000 906730000 720440000 325850000 394590000 172820000 74246000 98574000 40021000 12825000 27196000 409630000 174430000 235200000 6667 2633;3212;1034 6933 33753;33754;33755;33756;33757;33758;33759;33760;33761;33762;33763;33764;33765;33766;33767;33768;33769;33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781 33890;33891;33892;33893;33894;33895;33896;33897;33898;33899;33900;33901;33902;33903;33904;33905;33906;33907;33908;33909;33910;33911;33912;33913;33914;33915;33916;33917;33918;33919;33920;33921 33918 32 EIIEAMLK PVLTVIEWSQVHFLREIIEAMLKAYQQKLF SQVHFLREIIEAMLKAYQQKLFVTHTVDEL R E I L K A 1 0 0 0 0 0 2 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 945.5205 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PSE4 A0A1W2PPU6 154 161 SCARB2 Lysosome membrane protein 2 yes no 2 0.0094683 60.76 By MS/MS By matching 1 2 1.2635 1.1328 2.5474 3 Median 1.2539 1.1668 NaN 1 0 Median 1.287 1.1209 1.4953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11064000 4740300 6324000 5963700 2688600 3275100 5100600 2051700 3048900 0 0 0 0 0 0 0 0 0 0 0 0 6668 340 6934 33782;33783;33784 33922;33923 33923 2 EIIELLFHK VVIVCKRKGYSYELKEIIELLFHKMTDDPM YSYELKEIIELLFHKMTDDPMNNKDVKKSH K E I H K M 0 0 0 0 0 0 2 0 1 2 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1140.6543 P52735 P52735 448 456 VAV2 Guanine nucleotide exchange factor VAV2 yes yes 2 0.015787 43.246 By MS/MS 1 1.4001 1.2268 NaN 1 Median NaN NaN NaN 0 0 Median 1.4001 1.2268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3869700 1526400 2343200 0 0 0 3869700 1526400 2343200 0 0 0 0 0 0 0 0 0 0 0 0 6669 2455 6935 33785 33924 33924 1 EIIEVLQK LLYLLSPRDPAHTVREIIEVLQKGDGNAHS DPAHTVREIIEVLQKGDGNAHSKKDTEVRR R E I Q K G 0 0 0 0 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q15397 Q15397 457 464 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0058687 73.637 By matching By MS/MS By matching 1 3 1 1.0928 1.036 11.627 5 Median NaN NaN NaN 0 0 Median 1.4408 1.2623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0181 1.036 1.7269 3 0 Median 1.0945 0.91679 NaN 1 0 Median 36671000 16864000 19807000 0 0 0 878330 308960 569370 0 0 0 0 0 0 33258000 15364000 17894000 2534700 1191000 1343700 6670 2947 6936 33786;33787;33788;33789;33790 33925;33926;33927;33928 33925 4 EIIINAVR MFKHLVHKPSEERVREIIINAVRIEQEFLT PSEERVREIIINAVRIEQEFLTEALPVKLI R E I V R I 1 1 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 1 0 0 8 0 926.55492 P31350;A0A286YFD6;C9JXC1 P31350 291 298 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 0.010382 58.981 By MS/MS By MS/MS By matching 1 2 1 1.3345 1.2227 11.01 4 Median 1.2774 1.2733 NaN 1 0 Median 1.2679 1.0901 11.556 2 0 Median NaN NaN NaN 0 0 Median 1.425 1.2638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37484000 17254000 20230000 11725000 5982600 5742600 24754000 10916000 13838000 0 0 0 1004600 355160 649470 0 0 0 0 0 0 6671 2203 6937 33791;33792;33793;33794 33929;33930;33931 33929 3 EIIKQEENVDPDYWEK QYVVREEDGVEEVEREIIKQEENVDPDYWE IIKQEENVDPDYWEKLLRHHYEQQQEDLAR R E I E K L 0 0 1 2 0 1 4 0 0 2 0 2 0 0 1 0 0 1 1 1 0 0 16 1 2033.9582 Q8TDI0;K7EMY3;Q12873 Q8TDI0 1307 1322 CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 3 4.2047E-05 51.695 By MS/MS 1 0.81067 0.93633 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81067 0.93633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5979200 3083300 2895900 0 0 0 0 0 0 5979200 3083300 2895900 0 0 0 0 0 0 0 0 0 6672 3471;2766 6938 33795 33932;33933 33932 2 EIIKQEESVDPDYWEK VVREEEMGEEEEVEREIIKQEESVDPDYWE IIKQEESVDPDYWEKLLRHHYEQQQEDLAR R E I E K L 0 0 0 2 0 1 4 0 0 2 0 2 0 0 1 1 0 1 1 1 0 0 16 1 2006.9473 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y5M9;A0A2R8YE38 Q14839 1301 1316 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 4.1394E-09 102.66 By MS/MS By MS/MS 3 2 0.90762 1.0318 4.1046 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86679 1.0034 3.0264 3 0 Median 1.1307 1.0601 3.2679 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70233000 37241000 32992000 0 0 0 0 0 0 66148000 35411000 30737000 4085400 1830000 2255300 0 0 0 0 0 0 6673 246 6939 33796;33797;33798;33799;33800 33934;33935;33936;33937;33938;33939 33936 6 EIILVDDYSNDPEDGALLGK TVVSVLKKSPPHLIKEIILVDDYSNDPEDG DDYSNDPEDGALLGKIEKVRVLRNDRREGL K E I G K I 1 0 1 4 0 0 2 2 0 2 3 1 0 0 1 1 0 0 1 1 0 0 20 0 2175.0583 Q10471 Q10471 170 189 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 2 0.0027246 45.257 By MS/MS 1 0.80764 0.78068 NaN 1 Median 0.80764 0.78068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1944600 1175600 769050 1944600 1175600 769050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6674 2751 6940 33801 33940 33940 1 EIIQDVTLHDLDVANAR EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN IQDVTLHDLDVANARPQGGQDILSMMGQLM K E I A R P 2 1 1 3 0 1 1 0 1 2 2 0 0 0 0 0 1 0 0 2 0 0 17 0 1920.9905 Q9Y265;E7ETR0;H7C4G5;H7C4I3 Q9Y265 233 249 RUVBL1 RuvB-like 1 yes no 3 0.00012671 42.647 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.98053 0.93946 33.691 5 Median 0.44425 0.46916 NaN 1 0 Median 1.265 1.0653 NaN 1 0 Median 0.94988 0.96424 9.0031 2 0 Median 1.0963 0.93946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33110000 15975000 17136000 1489200 726350 762810 8379600 3619500 4760000 17795000 9170300 8624800 5446400 2458300 2988100 0 0 0 0 0 0 6675 4375 6941 33802;33803;33804;33805;33806 33941;33942;33943 33942 3 EIIQDVTLHDLDVANARPQGGQDILSMMGQLMK EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN QGGQDILSMMGQLMKPKKTEITDKLRGEIN K E I M K P 2 1 1 4 0 4 1 3 1 3 4 1 3 0 1 1 1 0 0 2 0 0 33 1 3635.811 Q9Y265;E7ETR0;H7C4G5;H7C4I3 Q9Y265 233 265 RUVBL1 RuvB-like 1 yes no 4 0.016942 14.374 By MS/MS 1 0.81752 0.74717 NaN 1 Median NaN NaN NaN 0 0 Median 0.81752 0.74717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1107000 589220 517740 0 0 0 1107000 589220 517740 0 0 0 0 0 0 0 0 0 0 0 0 6676 4375 6942 33807 33944;33945 33944 2 EIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPK EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN GQDILSMMGQLMKPKKTEITDKLRGEINKV K E I P K K 2 1 1 4 0 4 1 3 1 3 4 2 3 0 2 1 1 0 0 2 0 0 35 2 3860.9587 Q9Y265;E7ETR0;H7C4G5;H7C4I3 Q9Y265 233 267 RUVBL1 RuvB-like 1 yes no 5 0.021504 13.641 By MS/MS By matching 1 1 0.66434 0.72437 18.111 2 Median NaN NaN NaN 0 0 Median 0.80349 0.82334 NaN 1 0 Median 0.54929 0.63729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6568500 3361300 3207200 0 0 0 5489700 2735200 2754500 1078800 626120 452670 0 0 0 0 0 0 0 0 0 6677 4375 6943 33808;33809 33946 33946 1 EIISHISQHGGK LVELKVILHSSSGNKEIISHISQHGGKWPY GNKEIISHISQHGGKWPYWFKKMENIQKLG K E I G K W 0 0 0 0 0 1 1 2 2 3 0 1 0 0 0 2 0 0 0 0 0 0 12 0 1304.6837 A6NHR9;J3KTL8;J3QSH1 A6NHR9 760 771 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0021127 38.238 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1406 1.0942 13.105 5 Median 1.3217 1.2916 NaN 1 0 Median 1.0524 0.91677 NaN 1 0 Median 0.99418 1.1081 NaN 1 0 Median 1.2014 1.0942 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1406 0.98027 NaN 1 0 Median 6137000 2805800 3331200 378620 133480 245150 1027800 510700 517080 2959700 1368800 1590900 1041800 430780 611010 0 0 0 729120 362070 367050 6678 518 6944 33810;33811;33812;33813;33814 33947;33948;33949;33950;33951;33952;33953;33954 33950 8 EIISNLAK PLLIDEDYYARVEGREIISNLAKAAGLATM YARVEGREIISNLAKAAGLATMISTMRPDI R E I A K A 1 0 1 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 886.51238 O75533 O75533 595 602 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.002519 107.67 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 1.2718 1.0779 22.835 9 Median 0.84983 0.81494 37.575 2 0 Median 1.2793 1.0779 NaN 1 0 Median 1.0545 1.125 NaN 1 0 Median 1.2742 1.1104 NaN 1 0 Median 1.2757 1.3179 2.5018 2 0 Median 1.1436 0.95665 13.625 2 0 Median 148990000 65909000 83083000 10255000 6291200 3964200 23260000 9725800 13534000 16935000 7906400 9028700 8112800 3069100 5043700 55415000 23580000 31835000 35014000 15337000 19677000 6679 1683 6945 33815;33816;33817;33818;33819;33820;33821;33822;33823 33955;33956;33957;33958;33959;33960;33961;33962;33963;33964 33962 10 EIISYDVK GCLTNGHIYVSGDQKEIISYDVKDAIGISL YVSGDQKEIISYDVKDAIGISLLKKSGIEV K E I V K D 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 1 1 0 0 8 0 965.50696 Q8NFW8 Q8NFW8 299 306 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.0054254 75.854 By MS/MS By MS/MS 1 1 1.1041 1.0282 15.571 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95738 0.92099 NaN 1 0 Median 1.2733 1.1479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48071000 21466000 26605000 0 0 0 0 0 0 19805000 9405600 10400000 28265000 12060000 16205000 0 0 0 0 0 0 6680 3441 6946 33824;33825 33965;33966;33967 33967 3 EIKDAISGIGTDEK LIVGLMRPPAYCDAKEIKDAISGIGTDEKC KEIKDAISGIGTDEKCLIEILASRTNEQMH K E I E K C 1 0 0 2 0 0 2 2 0 3 0 2 0 0 0 1 1 0 0 0 0 0 14 1 1474.7515 P08133;E5RK63;E5RI05;E5RJF5 P08133 100 113 ANXA6 Annexin A6;Annexin yes no 2;3 8.2024E-05 128.28 By MS/MS By MS/MS 3 1 0.97272 0.95744 10.362 4 Median 0.94303 0.88502 9.5107 3 0 Median 1.1348 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34026000 16828000 17198000 32186000 15951000 16235000 1840400 877000 963380 0 0 0 0 0 0 0 0 0 0 0 0 6681 1898 6947 33826;33827;33828;33829 33968;33969;33970;33971 33970 4 EIKDAKEQVSPLETTLEK EQTVELSTEVQSLYREIKDAKEQVSPLETT DAKEQVSPLETTLEKFQQEKEELINKKNTS R E I E K F 1 0 0 1 0 1 4 0 0 1 2 3 0 0 1 1 2 0 0 1 0 0 18 2 2057.0892 Q92878;A0A1W2PQ90 Q92878 904 921 RAD50 DNA repair protein RAD50 yes no 3 1.5278E-06 76.713 By MS/MS By matching 1 1 0.87432 1.037 16.661 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76705 0.92172 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9966 1.1666 NaN 1 0 Median NaN NaN NaN 0 0 Median 40501000 21302000 19198000 0 0 0 0 0 0 37279000 19795000 17485000 0 0 0 3221600 1507700 1713900 0 0 0 6682 3561 6948 33830;33831 33972;33973 33973 2 EIKDILIQYDR LVAYYQKYVDEASKKEIKDILIQYDRTLLV ASKKEIKDILIQYDRTLLVADPRRCESKKF K E I D R T 0 1 0 2 0 1 1 0 0 3 1 1 0 0 0 0 0 0 1 0 0 0 11 1 1404.7613 P62249;M0R210 P62249 107 117 RPS16 40S ribosomal protein S16 yes no 2;3 5.1094E-05 134.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 3 2 1 1 1 1.1828 1.0726 24.138 13 Median 1.2443 1.0404 24.694 5 1 Linear 1.2122 1.07 21.715 3 0 Median 1.2021 1.2408 2.1151 2 0 Median 1.1831 1.0473 NaN 1 0 Median 1.3437 1.5123 NaN 1 0 Median 1.6398 1.311 NaN 1 0 Median 462620000 210440000 252180000 327480000 150540000 176940000 54263000 23903000 30360000 74977000 33933000 41044000 473930 190600 283330 2564000 1102400 1461600 2863700 770820 2092900 6683 2574 6949 33832;33833;33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844 33974;33975;33976;33977;33978;33979;33980;33981;33982;33983;33984;33985;33986;33987;33988;33989 33978 16 EIKDSTSQHDDDNISTTSGFSSR SSAFPIGSSGFSLVKEIKDSTSQHDDDNIS HDDDNISTTSGFSSRASDKDITVSKNTSLP K E I S R A 0 1 1 4 0 1 1 1 1 2 0 1 0 1 0 6 3 0 0 0 0 0 23 1 2526.1106 P49790 P49790 168 190 NUP153 Nuclear pore complex protein Nup153 yes yes 4 0.0076491 21.564 By MS/MS 1 0.89392 1.0698 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89392 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4016000 2089700 1926200 0 0 0 0 0 0 4016000 2089700 1926200 0 0 0 0 0 0 0 0 0 6684 2400 6950 33845 33990 33990 1 EIKDTEKEVDDLTAELK RNLQKAQDSVLRTEKEIKDTEKEVDDLTAE KDTEKEVDDLTAELKSLEDKAAEVVKNTNA K E I L K S 1 0 0 3 0 0 4 0 0 1 2 3 0 0 0 0 2 0 0 1 0 0 17 2 1974.9997 Q9NTJ3;E9PD53 Q9NTJ3 947 963 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.016869 32.507 By MS/MS By matching 1 1 0.97869 1.031 1.8207 2 Median 0.95383 1.0443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0042 1.0178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9583200 5028300 4555000 9187000 4829600 4357400 0 0 0 0 0 0 396180 198650 197530 0 0 0 0 0 0 6685 4108 6951 33846;33847 33991 33991 0 EIKIEISELNR EELQVTVGRHGDSLKEIKIEISELNRVIQR DSLKEIKIEISELNRVIQRLQGEIAHVKKQ K E I N R V 0 1 1 0 0 0 3 0 0 3 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1342.7456 CON__P35908;CON__P35908v2;P35908 CON__P35908 397 407 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 8.8604E-05 118.18 By MS/MS By MS/MS By MS/MS 3 1 3 0.17311 0.18601 159.07 2 Median 0.55035 0.57283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.054448 0.060404 NaN 1 1 Median NaN NaN NaN 0 0 Median 25070000 23330000 1740900 13857000 12209000 1648700 0 0 0 1524900 1524900 0 0 0 0 9688300 9596100 92204 0 0 0 + 6686 764;765 6952 33848;33849;33850;33851;33852;33853;33854 33992;33993;33994;33995;33996;33997;33998 33997 7 EILAELTGR YRAHGFTFTRGLSVREILAELTGRKGGCAK RGLSVREILAELTGRKGGCAKGKGGSMHMY R E I G R K 1 1 0 0 0 0 2 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1000.5553 P08559;Q5JPU0;Q5JPT9;Q5JPU1 P08559 133 141 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.0027536 69.825 By MS/MS By MS/MS By matching 1 1 2 1.5391 1.8347 22.208 4 Linear 1.6175 1.6215 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4645 1.5883 NaN 1 0 Median 1.312 1.1973 24.887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46501000 18604000 27897000 39555000 15763000 23793000 0 0 0 6185200 2497100 3688100 760220 343980 416240 0 0 0 0 0 0 6687 1902 6953 33855;33856;33857;33858 33999;34000 34000 2 EILAELTGRK YRAHGFTFTRGLSVREILAELTGRKGGCAK GLSVREILAELTGRKGGCAKGKGGSMHMYA R E I R K G 1 1 0 0 0 0 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1128.6503 P08559;Q5JPU0;Q5JPT9;Q5JPU1 P08559 133 142 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.02428 48.423 By MS/MS 1 0.74111 0.79397 NaN 1 Median 0.74111 0.79397 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5042300 2708600 2333800 5042300 2708600 2333800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6688 1902 6954 33859 34001 34001 1 EILDESLR DQLIKELPELLQRNREILDESLRLLDEEEA ELLQRNREILDESLRLLDEEEATDNDLRAK R E I L R L 0 1 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 973.50803 Q8WUM4 Q8WUM4 449 456 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.023052 44.447 By MS/MS By matching 2 1 1.0239 0.88721 6.0462 3 Median NaN NaN NaN 0 0 Median 0.98644 0.85246 5.6515 2 0 Median NaN NaN NaN 0 0 Median 1.0761 0.92215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6109900 2820800 3289100 0 0 0 5352800 2461600 2891200 0 0 0 757050 359180 397870 0 0 0 0 0 0 6689 3493 6955 33860;33861;33862 34002;34003 34002 2 EILDKFTEEVVK QGQVCCNGTRVFVQKEILDKFTEEVVKQTQ VQKEILDKFTEEVVKQTQRIKIGDPLLEDT K E I V K Q 0 0 0 1 0 0 3 0 0 1 1 2 0 1 0 0 1 0 0 2 0 0 12 1 1448.7763 P49189 P49189 299 310 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 3 0.053081 16.35 By MS/MS 1 1.0908 1.0478 NaN 1 Median 1.0908 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4681900 2235700 2446200 4681900 2235700 2446200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6690 2372 6956 33863 34004 34004 1 EILEENAER AQREADFKETLLQEREILEENAERRLAIFK TLLQEREILEENAERRLAIFKDLVGKCDTR R E I E R R 1 1 1 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1101.5302 Q96Q89 Q96Q89 629 637 KIF20B Kinesin-like protein KIF20B yes yes 2 0.0016494 89.698 By MS/MS 1 1.6352 1.8081 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6352 1.8081 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4011600 1312100 2699500 0 0 0 0 0 0 4011600 1312100 2699500 0 0 0 0 0 0 0 0 0 6691 3717 6957 33864 34005 34005 1 EILEFPAR LQVKLYPDSRVRPTREILEFPARDVYVPNT SRVRPTREILEFPARDVYVPNTTYRNLLYI R E I A R D 1 1 0 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 8 0 973.52328 Q96N67;A0A1B0GUE9;Q96HP0 Q96N67 544 551 DOCK7;DOCK6 Dedicator of cytokinesis protein 7;Dedicator of cytokinesis protein 6 yes no 2 0.031575 58.981 By MS/MS 1 0.49248 0.49466 NaN 1 Median 0.49248 0.49466 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1531500 995290 536180 1531500 995290 536180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6692 3707 6958 33865 34006 34006 1 EILEQGLFSK FILGASGETGRVLLKEILEQGLFSKVTLIG RVLLKEILEQGLFSKVTLIGRRKLTFDEEA K E I S K V 0 0 0 0 0 1 2 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1162.6234 E9PI87;Q9BUP3 E9PI87 37 46 HTATIP2 Oxidoreductase HTATIP2 yes no 2 0.022796 36.334 By MS/MS 1 0.58637 0.54689 NaN 1 Median 0.58637 0.54689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13939000 9275400 4663800 13939000 9275400 4663800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6693 939 6959 33866 34007 34007 1 EILETLIK GIFAYLNYHVPRTRREILETLIKGLQRLEY HVPRTRREILETLIKGLQRLEYRGYDSAGV R E I I K G 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 8 0 957.57465 Q06210 Q06210 18 25 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0067369 69.998 By MS/MS By matching 2 3 1.208 1.013 15.969 5 Median 1.2087 1.1445 25.703 2 0 Median 1.208 1.013 11.103 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17846000 7989900 9856200 7635300 3335900 4299400 10211000 4654000 5556800 0 0 0 0 0 0 0 0 0 0 0 0 6694 2723 6960 33867;33868;33869;33870;33871 34008 34008 1 EILFYDR ASSIPRLQIDVDGRKEILFYDRILCDVPCS QIDVDGRKEILFYDRILCDVPCSGDGTMRK K E I D R I 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 7 0 954.48108 Q08J23 Q08J23 258 264 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.016505 68.422 By MS/MS By matching By matching By matching 3 2 1 1 1.1519 1.0025 24.122 7 Median 1.2301 1.2344 16.395 3 0 Median 0.96631 0.85918 11.998 2 0 Median 1.478 1.5783 NaN 1 0 Median 1.1519 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14998000 7006600 7991300 13262000 6338300 6923700 510060 191580 318480 1099200 420750 678460 126690 55992 70699 0 0 0 0 0 0 6695 2745 6961 33872;33873;33874;33875;33876;33877;33878 34009 34009 1 EILGTAQSVGCNVDGR MRHRSLARELSGTIKEILGTAQSVGCNVDG ILGTAQSVGCNVDGRHPHDIIDDINSGAVE K E I G R H 1 1 1 1 1 1 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 16 0 1674.7995 P30050 P30050 131 146 RPL12 60S ribosomal protein L12 yes yes 2;3 3.6268E-05 57.802 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2477 1.0852 11.527 5 Median 1.3066 1.3122 NaN 1 0 Median 1.2105 1.0026 4.3983 2 0 Median NaN NaN NaN 0 0 Median 1.3096 1.0852 NaN 1 0 Median 1.0974 1.1608 NaN 1 0 Median NaN NaN NaN 0 0 Median 87310000 39284000 48025000 2584000 1004100 1579800 79905000 36046000 43858000 0 0 0 2890800 1163600 1727200 1930100 1070500 859590 0 0 0 6696 2185 6962 33879;33880;33881;33882;33883 34010;34011;34012;34013 34011 4 EILHHVNQAVR PTEREKVELAAECCREILHHVNQAVRDMED ECCREILHHVNQAVRDMEDLLRLKDYQRRL R E I V R D 1 1 1 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1314.7157 M0QZR4;Q92888;M0R2C7;M0QYC1 M0QZR4 653 663 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 3 0.024828 34.755 By MS/MS 1 1.6779 1.4546 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6779 1.4546 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 382240 159580 222650 0 0 0 0 0 0 0 0 0 382240 159580 222650 0 0 0 0 0 0 6697 1424 6963 33884 34014 34014 1 EILIPVFK PFTGDHKQKFYWGHKEILIPVFKNMADAMR KFYWGHKEILIPVFKNMADAMRKHPEVDVL K E I F K N 0 0 0 0 0 0 1 0 0 2 1 1 0 1 1 0 0 0 0 1 0 0 8 0 957.5899 P53396 P53396 547 554 ACLY ATP-citrate synthase yes yes 2 0.079203 28.512 By MS/MS By matching By matching 1 3 1 1.0612 0.90718 26.342 5 Median 1.0715 1.0362 NaN 1 0 Median 1.0612 0.90718 9.5297 3 0 Plateau 1.3633 1.4724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17946000 8514100 9432200 12790000 6181400 6608900 4870200 2219600 2650600 285780 113060 172720 0 0 0 0 0 0 0 0 0 6698 2467 6964 33885;33886;33887;33888;33889 34015 34015 1 EILKEQENRK GNLGAQNLSESAAVKEILKEQENRKGLIAA SAAVKEILKEQENRKGLIAAICAGPTALLA K E I R K G 0 1 1 0 0 1 3 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 2 1285.699 Q99497;K7ELW0;K7EN27 Q99497 90 99 PARK7 Protein deglycase DJ-1 yes no 3 0.0014929 52.79 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0954 1.1154 13.254 7 Median 1.0954 1.1664 10.941 3 0 Plateau 1.2614 1.1881 15.604 2 0 Median 1.0657 1.1932 NaN 1 0 Median 1.1007 0.90793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765600 2618400 3147300 2926300 1363700 1562700 2075400 869330 1206000 570760 283480 287280 193170 101880 91293 0 0 0 0 0 0 6699 3749 6965 33890;33891;33892;33893;33894;33895;33896 34016;34017;34018;34019;34020;34021;34022;34023 34020 8 EILLEMIHSIQNSQDMR VEALREAATAVEQEKEILLEMIHSIQNSQD LLEMIHSIQNSQDMRQISDGEREELNLTAN K E I M R Q 0 1 1 1 0 2 2 0 1 3 2 0 2 0 0 2 0 0 0 0 0 0 17 0 2056.0081 O95816 O95816 54 70 BAG2 BAG family molecular chaperone regulator 2 yes yes 3 0.021787 17.078 By MS/MS 1 1.088 0.88223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.088 0.88223 NaN 1 0 Median 961560 446470 515080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 961560 446470 515080 6700 1795 6966 33897 34024 34024 1 EILNLTSELLQK TQKSGTGATATVSPKEILNLTSELLQKCSS SPKEILNLTSELLQKCSSPAPGPGKEWEEY K E I Q K C 0 0 1 0 0 1 2 0 0 1 4 1 0 0 0 1 1 0 0 0 0 0 12 0 1399.7922 Q86TU7;Q6NXR6;C9K0W5 Q86TU7 24 35 SETD3 Histone-lysine N-methyltransferase setd3 yes no 2 0.00015992 131.52 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1812 1.0875 2.6208 4 Median 1.143 1.0998 NaN 1 0 Median 1.2207 1.0391 NaN 1 0 Median 1.0281 1.097 NaN 1 0 Median 1.2472 1.078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9095200 4240400 4854800 3027200 1482400 1544800 4508300 1988100 2520200 1375700 678840 696890 184080 91143 92936 0 0 0 0 0 0 6701 3269 6967 33898;33899;33900;33901 34025;34026;34027;34028 34027 4 EILQDKDGLNQR IRPDINVDVALTMPREILQDKDGLNQRYFR MPREILQDKDGLNQRYFRKRALYLAHLAHH R E I Q R Y 0 1 1 2 0 2 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1427.7369 Q9H6R4;A0A0A0MRW6 Q9H6R4 187 198 NOL6 Nucleolar protein 6 yes no 3 0.00015845 77.062 By MS/MS By MS/MS 1 1 1.0711 1.1966 19.57 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2109 1.3741 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94754 1.0419 NaN 1 0 Median NaN NaN NaN 0 0 Median 8271300 4208300 4063000 0 0 0 0 0 0 3305500 1430000 1875500 0 0 0 4965800 2778300 2187500 0 0 0 6702 3976 6968 33902;33903 34029;34030;34031 34029 3 EILQEEEDLAEIVQLVGK DKHFTEFVPLRTKAKEILQEEEDLAEIVQL QEEEDLAEIVQLVGKASLAETDKITLEVAK K E I G K A 1 0 0 1 0 2 5 1 0 2 3 1 0 0 0 0 0 0 0 2 0 0 18 0 2054.0783 P38606 P38606 481 498 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.069115 17.666 By MS/MS 1 1.0592 1.027 NaN 1 Median 1.0592 1.027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 831010 360710 470300 831010 360710 470300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6703 2276 6969 33904 34032 34032 1 EILQIMNK KIVMEAIQQASVAKKEILQIMNKTISKPRA QASVAKKEILQIMNKTISKPRASRKENGPV K E I N K T 0 0 1 0 0 1 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 987.5423 Q8TCS8 Q8TCS8 584 591 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.011113 57.559 By MS/MS By matching By matching By matching 1 1 1 1 1.1376 1.0034 12.686 4 Median 1.2089 1.1367 NaN 1 0 Median 1.0705 0.94824 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2219 1.0617 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0041 0.85213 NaN 1 0 Median 8460300 3831900 4628500 5036000 2301000 2735000 1870100 783480 1086600 0 0 0 1340200 608960 731200 0 0 0 214120 138440 75685 6704 3467 6970 33905;33906;33907;33908 34033 34033 1 EILRPWHAAR LHTTKLTRIARRLCREILRPWHAARHPYLP RRLCREILRPWHAARHPYLPINSAAIKAEC R E I A R H 2 2 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 10 1 1247.6887 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 488 497 MTA1 Metastasis-associated protein MTA1 yes no 3 0.00011546 82.749 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.81379 0.81387 18.206 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70624 0.80195 0.56226 2 0 Median 1.0627 0.9471 19.917 2 0 Median 0.68116 0.7401 NaN 1 0 Median 1.2645 1.1431 NaN 1 0 Median 22865000 12269000 10596000 0 0 0 0 0 0 7914600 4958000 2956600 7603700 3254400 4349400 6556300 3807200 2749100 790060 249350 540720 6705 888 6971 33909;33910;33911;33912;33913;33914 34034;34035;34036;34037 34034 4 EILSDRHAFETARR VNVNKIKDFGEAAKREILSDRHAFETARRL REILSDRHAFETARRLSHDNMEEKVPWVCP R E I R R L 2 3 0 1 0 0 2 0 1 1 1 0 0 1 0 1 1 0 0 0 0 0 14 2 1699.8754 Q96QC0 Q96QC0 436 449 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 4 0.056765 13.119 By MS/MS By matching By matching By matching 1 3 3 1 1.1208 1.1806 9.1297 8 Median NaN NaN NaN 0 0 Median 1.3309 1.3666 NaN 1 0 Median 0.99789 1.0865 11.04 3 0 Plateau 1.3215 1.169 5.3913 3 0 Median 1.0313 1.1923 NaN 1 0 Median NaN NaN NaN 0 0 Median 19588000 8730800 10857000 0 0 0 8140900 3398000 4743000 3539500 1711600 1827900 5939900 2666300 3273600 1967600 954850 1012700 0 0 0 6706 3718 6972 33915;33916;33917;33918;33919;33920;33921;33922 34038 34038 1 EILSELGK RFAGKVTTASVKERREILSELGKCVAGKDL ASVKERREILSELGKCVAGKDLPEGAVKGL R E I G K C 0 0 0 0 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 887.4964 Q92616 Q92616 28 35 GCN1L1 Translational activator GCN1 yes yes 2 0.026088 62.659 By MS/MS 1 0.9849 0.8588 NaN 1 Median NaN NaN NaN 0 0 Median 0.9849 0.8588 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4216500 2183900 2032500 0 0 0 4216500 2183900 2032500 0 0 0 0 0 0 0 0 0 0 0 0 6707 3544 6973 33923 34039 34039 1 EILSEVER KDPKACTILLRGASKEILSEVERNLQDAMQ LLRGASKEILSEVERNLQDAMQVCRNVLLD K E I E R N 0 1 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 973.50803 P49368;B4DUR8 P49368 382 389 CCT3 T-complex protein 1 subunit gamma yes no 2 0.0027464 127.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1 1.1512 1.0485 31.114 7 Median 1.1214 1.0485 NaN 1 0 Median 1.1957 1.0311 NaN 1 0 Median 1.1512 1.1486 NaN 1 1 Median 0.88637 0.75409 50.137 2 1 Median 1.4625 1.4685 NaN 1 0 Median 1.1475 0.98625 NaN 1 0 Median 198500000 89250000 109250000 87995000 39176000 48819000 79200000 35901000 43299000 14171000 6506400 7664400 4430800 2013800 2417000 7250100 2970100 4280100 5454300 2683200 2771100 6708 2379 6974 33924;33925;33926;33927;33928;33929;33930;33931 34040;34041;34042;34043;34044;34045;34046;34047;34048;34049 34041 10 EILTLLQGVHQGAGFQDIPK EEIRKVVQSLEQTAREILTLLQGVHQGAGF LQGVHQGAGFQDIPKRCLKAREHFGTVKTH R E I P K R 1 0 0 1 0 3 1 3 1 2 3 1 0 1 1 0 1 0 0 1 0 0 20 0 2163.1688 E9PGT1;Q15631;H7C1D4 E9PGT1 32 51 TSN Translin yes no 2;3 2.6675E-08 75.479 By MS/MS By matching 2 1 0.94358 0.87341 3.8017 3 Plateau 0.9217 0.85455 3.0871 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96197 0.8097 NaN 1 0 Median 34012000 16911000 17101000 32232000 16075000 16158000 0 0 0 0 0 0 0 0 0 0 0 0 1779900 835980 943940 6709 925 6975 33932;33933;33934 34050;34051;34052 34052 3 EILTLLQGVHQGAGFQDIPKR EEIRKVVQSLEQTAREILTLLQGVHQGAGF QGVHQGAGFQDIPKRCLKAREHFGTVKTHL R E I K R C 1 1 0 1 0 3 1 3 1 2 3 1 0 1 1 0 1 0 0 1 0 0 21 1 2319.2699 E9PGT1;Q15631;H7C1D4 E9PGT1 32 52 TSN Translin yes no 3;4 1.0257E-17 99.86 By MS/MS 2 0.97305 1.0167 4.1965 2 Median 0.97305 1.0167 4.1965 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25419000 12242000 13178000 25419000 12242000 13178000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6710 925 6976 33935;33936 34053;34054 34053 2 EILVEESNVQR LIKESEVKALCAKAREILVEESNVQRVDSP AKAREILVEESNVQRVDSPVTVCGDIHGQF R E I Q R V 0 1 1 0 0 1 3 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1314.6779 H3BV22;H3BTA2;P60510;I3L4X0 H3BV22 34 44 PPP4C Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 4 catalytic subunit yes no 2 9.412E-10 174.02 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1633 1.0245 73.596 6 Median 1.519 1.42 19.041 2 2 Median 1.1113 0.92412 NaN 1 0 Median 1.0449 1.0335 NaN 1 0 Median 0.50232 0.45262 114.29 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43610000 18351000 25259000 19662000 7276100 12386000 16031000 6938200 9092800 4147900 2020200 2127700 3769100 2116600 1652500 0 0 0 0 0 0 6711 1236 6977 33937;33938;33939;33940;33941;33942 34055;34056;34057;34058;34059;34060;34061 34059 7 EILVGDVGQTVDDPYATFVK CLSEDKKNIILEEGKEILVGDVGQTVDDPY DVGQTVDDPYATFVKMLPDKDCRYALYDAT K E I V K M 1 0 0 3 0 1 1 2 0 1 1 1 0 1 1 0 2 0 1 4 0 0 20 0 2165.0892 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 54 73 CFL1 Cofilin-1 yes no 2;3 1.6772E-08 79.633 By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 1.0567 0.90506 26.765 8 Median 0.94449 0.88947 21.223 3 0 Median 1.0567 0.90506 1.2613 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3549 1.5668 NaN 1 0 Median 0.98821 0.78916 29.341 2 0 Median 29319000 13954000 15365000 4674900 2509300 2165600 22592000 10662000 11930000 0 0 0 0 0 0 1454600 527170 927430 598090 255810 342280 6712 2118 6978 33943;33944;33945;33946;33947;33948;33949;33950 34062;34063;34064;34065;34066;34067;34068;34069 34066 8 EIMAEDDQVFLMK DIITKPPVRKFVHEKEIMAEDDQVFLMKLQ EKEIMAEDDQVFLMKLQSLLAKQPPTAAGR K E I M K L 1 0 0 2 0 1 2 0 0 1 1 1 2 1 0 0 0 0 0 1 0 0 13 0 1567.7262 Q9Y6G9;E9PHI6 Q9Y6G9 366 378 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 0.011295 35.541 By MS/MS 1 1.1454 1.1503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1454 1.1503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4978500 2100000 2878500 0 0 0 0 0 0 4978500 2100000 2878500 0 0 0 0 0 0 0 0 0 6713 4491 6979 33951 34070 34070 1 EIMDAAEDYAK MPSASASRKSQEKPREIMDAAEDYAKERYG EKPREIMDAAEDYAKERYGISSMIQSQEKP R E I A K E 3 0 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 11 0 1254.5438 P14868;H7C278 P14868 16 26 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0007518 63.283 By matching By MS/MS By MS/MS By MS/MS 3 2 1 1 1.0411 0.97686 15.503 7 Median 1.0411 0.97686 9.0316 3 0 Median 0.9253 0.82675 26.71 2 0 Median 1.0048 0.98438 NaN 1 0 Median 1.1199 0.96098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47953000 23260000 24693000 18681000 9144600 9536600 16560000 7872600 8687100 9086600 4660900 4425600 3625500 1581900 2043700 0 0 0 0 0 0 6714 2012 6980 33952;33953;33954;33955;33956;33957;33958 34071;34072;34073 34073 3 EIMEILQTELGESAGK QQEKQEAILNYESLREIMEILQTELGESAG IMEILQTELGESAGKISQEFESMKQQQASD R E I G K I 1 0 0 0 0 1 4 2 0 2 2 1 1 0 0 1 1 0 0 0 0 0 16 0 1746.871 Q8IWJ2;B8ZZW2 Q8IWJ2 485 500 GCC2 GRIP and coiled-coil domain-containing protein 2 yes no 2 0.0060531 32.062 By MS/MS 1 1.1731 1.0412 NaN 1 Median NaN NaN NaN 0 0 Median 1.1731 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3870900 1853000 2017900 0 0 0 3870900 1853000 2017900 0 0 0 0 0 0 0 0 0 0 0 0 6715 3326 6981 33959 34074 34074 1 EIMLAAK GGVPTDEEQATGLEREIMLAAKKGLDPYNV EQATGLEREIMLAAKKGLDPYNVLAPKGAS R E I A K K 2 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 7 0 774.43096 P10606 P10606 50 56 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 1 0.059578 139.92 By MS/MS By matching 1 1 1.0132 0.88799 13.53 2 Median 0.88143 0.80697 NaN 1 0 Median 1.1648 0.97714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6186300 3022800 3163500 4626700 2348200 2278500 1559600 674590 885020 0 0 0 0 0 0 0 0 0 0 0 0 6716 1943 6982 33960;33961 34075 34075 0 EIMNDIPIR LPSNCEPVVSPSMFREIMNDIPIRLSRIKF SPSMFREIMNDIPIRLSRIKFREEAKRLLF R E I I R L 0 1 1 1 0 0 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 9 0 1099.5696 Q9H4Z3 Q9H4Z3 266 274 PCIF1 Phosphorylated CTD-interacting factor 1 yes yes 2 0.0019502 75.854 By matching By MS/MS 2 1 1.0734 1.1174 77.417 3 Plateau NaN NaN NaN 0 0 Median 0.44141 0.43441 77.691 2 0 Median 1.0734 1.1174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12456000 7175000 5281400 0 0 0 6751400 4173200 2578200 5705100 3001800 2703300 0 0 0 0 0 0 0 0 0 6717 3968 6983 33962;33963;33964 34076 34076 1 EIMNDLEK FLVKPSFDPNLSELREIMNDLEKKMQSTLI PNLSELREIMNDLEKKMQSTLISAARDLGL R E I E K K 0 0 1 1 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 990.4692 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 483 490 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.022436 65.246 By MS/MS 1 3.4261 3.7227 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.4261 3.7227 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16152000 3313800 12838000 0 0 0 0 0 0 16152000 3313800 12838000 0 0 0 0 0 0 0 0 0 6718 2324 6984 33965 34077 34077 1 EINDCIGGTVLNISK KVPVSVNLLSKNLSREINDCIGGTVLNISK EINDCIGGTVLNISKSGSCSAIRIGHVGMQ R E I S K S 0 0 2 1 1 0 1 2 0 3 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1631.8189 O76021;J3QSV6 O76021 193 207 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 3.1696E-07 92.19 By MS/MS 2 1.0525 1.0406 4.7285 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0525 1.0406 4.7285 2 1 Median NaN NaN NaN 0 0 Median 56320000 25229000 31090000 0 0 0 0 0 0 0 0 0 0 0 0 56320000 25229000 31090000 0 0 0 6719 1716 6985 33966;33967 34078;34079;34080 34080 3 EINNAHAILTDATKR PDKNPDNPEAADKFKEINNAHAILTDATKR EINNAHAILTDATKRNIYDKYGSLGLYVAE K E I K R N 3 1 2 1 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 0 0 0 15 1 1665.8798 Q9H3Z4 Q9H3Z4 59 73 DNAJC5 DnaJ homolog subfamily C member 5 yes yes 3;4 1.2731E-09 121.18 By MS/MS By MS/MS 3 3 1.2937 1.2695 27.275 6 Median 1.0649 1.1193 19.21 3 0 Plateau 1.6026 1.4893 5.4597 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55833000 25577000 30256000 39557000 19101000 20456000 16276000 6476300 9799300 0 0 0 0 0 0 0 0 0 0 0 0 6720 3959 6986 33968;33969;33970;33971;33972;33973 34081;34082;34083;34084;34085;34086 34081 5 EINNPMFR VVREGPMFEAMIMNREINNPMFRFLFENQT EAMIMNREINNPMFRFLFENQTPAHVYYRW R E I F R F 0 1 2 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 1019.4859 O15042;E7ET15 O15042 453 460 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.0035455 89.673 By matching By MS/MS By matching 1 2 1 0.96496 0.97216 9.0556 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99036 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89377 0.92305 7.9028 2 0 Median 1.1811 0.96825 NaN 1 0 Median 20309000 10235000 10074000 0 0 0 0 0 0 4600700 1901400 2699300 0 0 0 14959000 7980800 6978600 749370 353150 396220 6721 1515 6987 33974;33975;33976;33977 34087;34088;34089 34089 3 EINSDQATQGNISSDR ISVTPVKNIDPVKNKEINSDQATQGNISSD INSDQATQGNISSDRGKKRTVTAAGAENIQ K E I D R G 1 1 2 2 0 2 1 1 0 2 0 0 0 0 0 3 1 0 0 0 0 0 16 0 1733.7816 Q29RF7 Q29RF7 1220 1235 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 7.2165E-08 97.911 By MS/MS By MS/MS 1 3 1.0729 0.99324 9.7216 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99106 1.0886 NaN 1 0 Median 1.1325 0.96497 8.4263 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6866400 3425300 3441100 0 0 0 0 0 0 3252500 1624100 1628400 3613900 1801200 1812700 0 0 0 0 0 0 6722 3003 6988 33978;33979;33980;33981 34090;34091;34092;34093 34090 4 EINTNQEALKR IDLEANFEKIENELKEINTNQEALKRNFLE NELKEINTNQEALKRNFLELTELKFILRKT K E I K R N 1 1 2 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1314.6892 Q93050;K7EM24;K7EN36;K7EPG4 Q93050 110 120 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 3 0.0022912 57.836 By MS/MS 1 1.0209 0.96119 NaN 1 Median NaN NaN NaN 0 0 Median 1.0209 0.96119 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3467700 1720600 1747100 0 0 0 3467700 1720600 1747100 0 0 0 0 0 0 0 0 0 0 0 0 6723 3576 6989 33982 34094 34094 1 EINYILR GSTTSGVVSGSLGSREINYILRVLGPAACR VSGSLGSREINYILRVLGPAACRNPDIFTE R E I L R V 0 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 7 0 919.51272 Q7Z6Z7 Q7Z6Z7 1866 1872 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.0078867 87.582 By MS/MS By MS/MS 1 1 1.2155 1.0747 4.5387 2 Median 1.1401 1.1097 NaN 1 0 Median 1.296 1.0407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33992000 14236000 19756000 18960000 7803000 11157000 15032000 6433000 8599300 0 0 0 0 0 0 0 0 0 0 0 0 6724 3253 6990 33983;33984 34095;34096;34097 34095 3 EIPFLNEQTNSK VYDQAQSVMEQNTVKEIPFLNEQTNSKIEK TVKEIPFLNEQTNSKIEKTDNVEVTDGENK K E I S K I 0 0 2 0 0 1 2 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1418.7042 Q92576;E7ER40 Q92576 1495 1506 PHF3 PHD finger protein 3 yes no 2 6.1703E-08 127.76 By MS/MS 2 0.51459 0.56778 0.56588 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51459 0.56778 0.56588 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24827000 15097000 9730200 0 0 0 0 0 0 24827000 15097000 9730200 0 0 0 0 0 0 0 0 0 6725 3539 6991 33985;33986 34098;34099 34099 2 EIPIVHR PIRVGEIVVFRIEGREIPIVHRVLKIHEKQ VVFRIEGREIPIVHRVLKIHEKQNGHIKFL R E I H R V 0 1 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 0 1 0 0 7 0 862.50249 H0YNX5;H0YNA5;H0YNG3;P67812 H0YNX5 65 71 SEC11A Signal peptidase complex catalytic subunit SEC11;Signal peptidase I;Signal peptidase complex catalytic subunit SEC11A yes no 2 0.011345 80.377 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.94889 0.92546 17.704 4 Median 0.94231 0.92494 NaN 1 0 Median 1.1161 0.92598 NaN 1 0 Median 0.95552 0.96951 NaN 1 0 Median 0.81341 0.66146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15578000 7676200 7902200 6741900 3415100 3326800 3688000 1664900 2023100 4973100 2498600 2474600 175370 97649 77717 0 0 0 0 0 0 6726 1202 6992 33987;33988;33989;33990 34100;34101;34102 34102 3 EIPSATQSPISK TLGVQRPKLEKKDAKEIPSATQSPISKKRK DAKEIPSATQSPISKKRKKKGFLPETKKRK K E I S K K 1 0 0 0 0 1 1 0 0 2 0 1 0 0 2 3 1 0 0 0 0 0 12 0 1256.6612 Q9BQG0;I3L1L3 Q9BQG0 1156 1167 MYBBP1A Myb-binding protein 1A yes no 2 0.00011005 90.827 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 0.87716 0.78088 27.231 9 Median NaN NaN NaN 0 0 Median 1.0859 1.0238 4.9474 2 0 Median 0.94295 1.0234 38.242 2 0 Median 0.93481 0.80075 NaN 1 1 Median 0.52122 0.54585 NaN 1 1 Median 0.81487 0.69813 3.6724 3 1 Median 70448000 36530000 33917000 0 0 0 17272000 6246700 11025000 23659000 12828000 10831000 2968000 1404600 1563400 16133000 10825000 5308100 10416000 5226000 5189800 6727 3789 6993 33991;33992;33993;33994;33995;33996;33997;33998;33999;34000 34103;34104;34105;34106;34107;34108;34109;34110;34111 34104 9 EIPSHVLSK PGQFAENETNEVNFREIPSHVLSKVCMYFT NEVNFREIPSHVLSKVCMYFTYKVRYTNSS R E I S K V 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 2 0 0 0 1 0 0 9 0 1008.5604 Q15369;E5RHG8 Q15369 64 72 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 0.0071919 52.255 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.95135 0.83232 11.374 5 Median 0.98308 0.89057 NaN 1 0 Median 1.0127 0.83232 NaN 1 0 Median 0.91675 0.88196 NaN 1 0 Median 0.95135 0.77137 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82579 0.67643 NaN 1 0 Median 55425000 27505000 27920000 23017000 11607000 11410000 23144000 11256000 11888000 6104900 3059000 3045900 2386400 1179700 1206600 0 0 0 772360 402490 369870 6728 846 6994 34001;34002;34003;34004;34005 34112;34113;34114;34115 34114 4 EIPVESIEEVSK PGIEVLWTGPKVVSKEIPVESIEEVSKIIK VSKEIPVESIEEVSKIIKRAPVIWDNIHAN K E I S K I 0 0 0 0 0 0 4 0 0 2 0 1 0 0 1 2 0 0 0 2 0 0 12 0 1357.6977 O60502;H7C3X0 O60502 258 269 MGEA5 Protein O-GlcNAcase yes no 2 0.00058617 73.781 By MS/MS By matching 2 1 1.1221 1.0517 21.92 3 Median 0.99084 0.94932 29.851 2 0 Median 1.1221 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21515000 10190000 11325000 12217000 5935000 6281600 9298800 4255000 5043900 0 0 0 0 0 0 0 0 0 0 0 0 6729 1617 6995 34006;34007;34008 34116 34116 1 EIPYTFEDR FYRKGVKAVDPKTGREIPYTFEDRINFAVF DPKTGREIPYTFEDRINFAVFPSLQGGPHN R E I D R I 0 1 0 1 0 0 2 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1168.5401 P34897;H0YIZ0;G3V2Y4 P34897 306 314 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.0044715 60.59 By MS/MS 1 1.18 1.0115 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.18 1.0115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4486700 2193300 2293400 0 0 0 0 0 0 0 0 0 4486700 2193300 2293400 0 0 0 0 0 0 6730 2228 6996 34009 34117;34118;34119;34120;34121 34117 5 EIQAPASADIR DVLEQRGRLQKLVAKEIQAPASADIRVLRG LVAKEIQAPASADIRVLRGHQLSITCLVVT K E I I R V 3 1 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1169.6041 O43818 O43818 130 140 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.00012526 138.98 By MS/MS 1 0.9822 0.97885 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9822 0.97885 NaN 1 0 Median NaN NaN NaN 0 0 Median 14118000 6694700 7422800 0 0 0 0 0 0 0 0 0 0 0 0 14118000 6694700 7422800 0 0 0 6731 1594 6997 34010 34122;34123 34123 2 EIQEPDPTYEEK EMEEIFDDASPGKQKEIQEPDPTYEEKMQT KQKEIQEPDPTYEEKMQTDRANRFEYLLKQ K E I E K M 0 0 0 1 0 1 4 0 0 1 0 1 0 0 2 0 1 0 1 0 0 0 12 0 1476.662 O60264 O60264 72 83 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00063169 65.056 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.90617 0.77965 21.106 6 Median 0.68366 0.73079 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94443 0.98786 NaN 1 0 Median 0.96654 0.82397 NaN 1 1 Median 0.91322 0.9472 35.348 2 0 Median 0.86945 0.71904 NaN 1 0 Median 24749000 13045000 11704000 3254600 1633500 1621100 0 0 0 5296700 2747400 2549400 2382700 1154500 1228100 12416000 6781900 5634000 1399400 727940 671430 6732 1608 6998 34011;34012;34013;34014;34015;34016 34124;34125;34126 34124 3 EIQGFFSFPVDNLR KAGLTHIITMDLHQKEIQGFFSFPVDNLRA KEIQGFFSFPVDNLRASPFLLQYIQEEIPN K E I L R A 0 1 1 1 0 1 1 1 0 1 1 0 0 3 1 1 0 0 0 1 0 0 14 0 1667.8308 B4DP31;Q14558;C9J168;C9JUN4;C9JKT9 B4DP31 65 78 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 2 0.037674 25.437 By MS/MS 1 0.79603 0.80499 NaN 1 Median 0.79603 0.80499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1767300 1149100 618170 1767300 1149100 618170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6733 600 6999 34017 34127 34127 1 EIQLEISGK PLTLYYSHWRKLRDREIQLEISGKERLEDL RKLRDREIQLEISGKERLEDLNFPEIKRRK R E I G K E 0 0 0 0 0 1 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1015.555 Q9Y3T9 Q9Y3T9 629 637 NOC2L Nucleolar complex protein 2 homolog yes yes 2 3.4516E-18 160.63 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0572 1.18 20.683 4 Median 0.9954 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1229 1.2307 NaN 1 1 Median 1.7127 1.485 NaN 1 0 Median 0.88104 0.90173 NaN 1 1 Median NaN NaN NaN 0 0 Median 22461000 11024000 11437000 2805700 1350600 1455100 0 0 0 7597700 3396600 4201100 3016300 1144300 1872000 9041300 5132600 3908700 0 0 0 6734 4433 7000 34018;34019;34020;34021;34022 34128;34129;34130;34131 34128 4 EIQMLAR KGVRHTMMFSATFPKEIQMLARDFLDEYIF MFSATFPKEIQMLARDFLDEYIFLAVGRVG K E I A R D 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 387 393 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.025507 69.432 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 1 3 0.83264 0.73282 61.854 11 Median 1.2012 1.2193 78.267 2 0 Median 0.94271 0.81581 NaN 1 0 Median 0.42669 0.4595 139.52 2 1 Median 0.7615 0.63202 44.554 2 0 Median 0.83264 0.8398 NaN 1 0 Median 0.7586 0.65176 9.1942 3 0 Median 52333000 28292000 24041000 9532400 5212800 4319600 7504000 3491900 4012100 19716000 11148000 8567400 1617300 807060 810260 2854300 1516100 1338200 11109000 6116000 4993400 6735 263 7001 34023;34024;34025;34026;34027;34028;34029;34030;34031;34032;34033 34132;34133;34134;34135;34136;34137 34132 6 EIQSAFVSVLSENDELSQDVASK VRKLSTHKEVKSHLKEIQSAFVSVLSENDE VLSENDELSQDVASKGLGLVYELGNEQDQQ K E I S K G 2 0 1 2 0 2 3 0 0 1 2 1 0 1 0 5 0 0 0 3 0 0 23 0 2494.2075 Q5VYK3;J3KN16 Q5VYK3 985 1007 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 0.027716 20.199 By MS/MS 1 1.1095 1.0694 NaN 1 Median 1.1095 1.0694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3413300 1810500 1602800 3413300 1810500 1602800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6736 3116 7002 34034 34138 34138 1 EIQSSNLETAMSVIGDRR GAADLERVTDYAEEKEIQSSNLETAMSVIG SSNLETAMSVIGDRRSREQKAKQEREKELA K E I R R S 1 2 1 1 0 1 2 1 0 2 1 0 1 0 0 3 1 0 0 1 0 0 18 1 2004.9899 Q9NX55 Q9NX55 54 71 HYPK Huntingtin-interacting protein K yes yes 3 0.0010336 27.85 By MS/MS 1 1.0384 1.1276 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0384 1.1276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5733200 2706000 3027200 0 0 0 0 0 0 5733200 2706000 3027200 0 0 0 0 0 0 0 0 0 6737 4159 7003 34035 34139;34140 34139 2 EIQTAVR SRLAHYNKRSTITSREIQTAVRLLLPGELA KRSTITSREIQTAVRLLLPGELAKHAVSEG R E I V R L 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 815.45012 Q16778;P33778;P23527;P06899;Q96A08;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 94 100 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2 0.0017906 122.98 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 10 9 1.221 1.0869 12.656 26 Median 1.2909 1.2543 NaN 1 0 Median 1.7069 1.4158 NaN 1 0 Median 1.0739 1.0889 14.252 3 0 Plateau 1.6227 1.3102 15.449 2 0 Median 0.98066 1.0361 4.2313 10 0 Median 1.4235 1.1096 10.529 9 0 Median 773690000 353380000 420300000 875580 362020 513560 4946800 1900600 3046200 6363300 3054500 3308900 3231900 1130500 2101400 406590000 204370000 202220000 351680000 142570000 209110000 6738 2117;2521 7004 34036;34037;34038;34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060;34061 34141;34142;34143;34144;34145;34146;34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167;34168;34169;34170;34171;34172;34173;34174;34175;34176;34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197;34198 34184 58 EIQTAVRLLLPGELAK SRLAHYNKRSTITSREIQTAVRLLLPGELA IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R E I A K H 2 1 0 0 0 1 2 1 0 1 4 1 0 0 1 0 1 0 0 1 0 0 16 1 1750.0353 Q16778;P33778;P23527;P06899;Q96A08;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 94 109 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2;3 0.00064113 63.727 By MS/MS By matching 2 1 0.88219 0.99449 14.165 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83319 0.93905 8.1112 2 0 Median 1.4605 1.1752 NaN 1 0 Median 9803100 5325800 4477200 0 0 0 0 0 0 0 0 0 0 0 0 9518800 5224900 4293900 284290 100940 183350 6739 2117;2521 7005 34062;34063;34064 34199;34200;34201 34200 3 EIQTTTGNQQVLVR YLACRDVEKGELVAKEIQTTTGNQQVLVRK KEIQTTTGNQQVLVRKLDLSDTKSIRAFAK K E I V R K 0 1 1 0 0 3 1 1 0 1 1 0 0 0 0 0 3 0 0 2 0 0 14 0 1585.8424 Q8TC12 Q8TC12 84 97 RDH11 Retinol dehydrogenase 11 yes yes 2 4.287E-08 158.79 By MS/MS By MS/MS 1 1 1.2375 1.095 4.535 2 Median 1.1334 1.0605 NaN 1 0 Median 1.3511 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14737000 6474200 8263200 11556000 5059300 6496600 3181500 1414900 1766600 0 0 0 0 0 0 0 0 0 0 0 0 6740 3464 7006 34065;34066 34202;34203;34204;34205 34204 4 EIQVIPLQR VIAANNRILAERIAKEIQVIPLQRDDED__ AERIAKEIQVIPLQRDDED___________ K E I Q R D 0 1 0 0 0 2 1 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1094.6448 P29218 P29218 265 273 IMPA1 Inositol monophosphatase 1 yes yes 2 0.001612 79.597 By MS/MS By matching By matching 1 1 1 1.1589 0.98667 27.222 3 Median 1.2424 1.1602 NaN 1 0 Median 1.1589 0.98667 NaN 1 0 Median 0.72785 0.68213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10792000 5275300 5516300 8207100 3855800 4351300 1094100 512840 581300 1490400 906680 583760 0 0 0 0 0 0 0 0 0 6741 2169 7007 34067;34068;34069 34206;34207 34207 2 EIQVQHPAAK MGGIVMTNDGNAILREIQVQHPAAKSMIEI NAILREIQVQHPAAKSMIEISRTQDEEVGD R E I A K S 2 0 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 1119.6037 P49368;B4DUR8;E9PRC8;Q5SZX6;Q5SZX9 P49368 69 78 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00034627 106.36 By MS/MS By MS/MS By matching 1 1 1 1.0117 0.90139 12.668 3 Median 0.93791 0.90139 NaN 1 0 Median 1.0117 0.85131 NaN 1 0 Median 1.0869 1.0848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11436000 5609300 5826400 3591600 1818300 1773300 7596200 3670700 3925500 247970 120350 127620 0 0 0 0 0 0 0 0 0 6742 2379 7008 34070;34071;34072 34208;34209;34210;34211;34212 34209 5 EIQYGIR ENGPELILRFQKELKEIQYGIRAHEWMFPV LRFQKELKEIQYGIRAHEWMFPV_______ K E I I R A 0 1 0 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 7 0 877.46577 O15382;B3KSI3 O15382 378 384 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2 0.033693 48.174 By matching By MS/MS 2 1 1.4397 1.4234 27.392 3 Plateau 1.0403 1.0217 15.221 2 0 Median 1.8347 1.5805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5610800 2340000 3270800 3011600 1287600 1723900 2599200 1052400 1546800 0 0 0 0 0 0 0 0 0 0 0 0 6743 1543 7009 34073;34074;34075 34213 34213 1 EIREDLPVNTSK GEDNSTAQDTEELEKEIREDLPVNTSKTRP LEKEIREDLPVNTSKTRPKQEKAFSLKTIS K E I S K T 0 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1399.7307 Q86UE4;E5RJU9 Q86UE4 468 479 MTDH Protein LYRIC yes no 3 0.019442 39.006 By MS/MS 1 0.81986 0.83828 NaN 1 Median 0.81986 0.83828 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2163800 1083700 1080100 2163800 1083700 1080100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6744 3276 7010 34076 34214 34214 1 EIRPALELLEPIEQK IAIVSTTVETKEPEKEIRPALELLEPIEQK EIRPALELLEPIEQKFVSISDLLVPKDLGT K E I Q K F 1 1 0 0 0 1 4 0 0 2 3 1 0 0 2 0 0 0 0 0 0 0 15 1 1776.9986 P50395 P50395 365 379 GDI2 Rab GDP dissociation inhibitor beta yes yes 3 9.2032E-08 91.076 By MS/MS By MS/MS By matching 1 1 1 0.68521 0.6247 16.881 3 Median NaN NaN NaN 0 0 Median 0.68521 0.6247 NaN 1 0 Median 0.55473 0.56329 NaN 1 1 Median 0.81539 0.78357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43728000 25448000 18280000 0 0 0 21969000 12729000 9240400 19245000 11425000 7819900 2514600 1294800 1219800 0 0 0 0 0 0 6745 2411 7011 34077;34078;34079 34215;34216 34215 2 EISAQIR ______________________________ PAEILNGKEISAQIRARLKNQVTQLKEQVP K E I I R A 1 1 0 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 7 0 815.45012 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 11 17 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00617 94.163 By matching By MS/MS By matching By matching 1 2 2 1 1.2849 1.1429 48.908 6 Median 0.92654 0.92056 NaN 1 0 Median 1.5689 1.3561 26.184 2 0 Median 1.8302 2.0013 77.232 2 0 Median 1.2225 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16715000 7634600 9080300 1761800 949990 811820 13450000 6041400 7409000 1270400 549260 721170 232280 93933 138350 0 0 0 0 0 0 6746 1968 7012 34080;34081;34082;34083;34084;34085 34217 34217 1 EISDHVLR LLFIMLDQMDPEQDREISDHVLRMHRYRAP MDPEQDREISDHVLRMHRYRAPGEQDGDAM R E I L R M 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 967.50869 P25205;J3KQ69;A0A499FHX9 P25205 496 503 MCM3 DNA replication licensing factor MCM3 yes no 2 0.010576 58.604 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2317 1.0648 10.409 3 Median 1.248 1.2462 NaN 1 0 Median 1.2317 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1928 1.0237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16274000 7275400 8998600 1504400 697300 807130 13904000 6210200 7694100 0 0 0 865260 367900 497360 0 0 0 0 0 0 6747 2129 7013 34086;34087;34088;34089;34090 34218;34219;34220;34221;34222 34221 5 EISEASENIYSDVR KMPGQSVRKKTRKAKEISEASENIYSDVRG KEISEASENIYSDVRGLSQNQQIPQNSVTP K E I V R G 1 1 1 1 0 0 3 0 0 2 0 0 0 0 0 3 0 0 1 1 0 0 14 0 1610.7424 Q8WYP5 Q8WYP5 1781 1794 AHCTF1 Protein ELYS yes yes 2 8.0047E-11 120.96 By MS/MS 3 1.0442 1.1167 3.7849 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0442 1.1167 3.7849 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22824000 10576000 12248000 0 0 0 0 0 0 22824000 10576000 12248000 0 0 0 0 0 0 0 0 0 6748 3524 7014 34091;34092;34093 34223;34224;34225;34226 34226 4 EISEGDEVEVYSR PFNEVRLPPPPDIKKEISEGDEVEVYSRAN KKEISEGDEVEVYSRANDQEPCGWWLAKVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 2 0 0 1 2 0 0 13 0 1510.6787 B4DXZ6;P51114;C9JAJ4 B4DXZ6 45 57 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 1.8964E-08 140.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.8987 0.83961 8.979 7 Median 0.91705 0.88142 6.8715 2 0 Median 0.95491 0.82849 10.768 3 2 Median 0.82148 0.85787 NaN 1 1 Median 0.8987 0.75055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35906000 19360000 16547000 20015000 11134000 8881200 8414300 4194700 4219500 5430800 2922600 2508300 2045900 1108400 937500 0 0 0 0 0 0 6749 608 7015 34094;34095;34096;34097;34098;34099;34100 34227;34228;34229;34230;34231;34232;34233 34230 7 EISFAYEVLSNPEK EYHPDKNPNAGDKFKEISFAYEVLSNPEKR KEISFAYEVLSNPEKRELYDRYGEQGLREG K E I E K R 1 0 1 0 0 0 3 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 14 0 1624.7985 O60884 O60884 49 62 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2 0.0029892 39.918 By matching By MS/MS 1 1 0.92857 0.86627 2.9923 2 Median NaN NaN NaN 0 0 Median 1.01 0.88479 NaN 1 0 Median 0.85367 0.84813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3786900 1785200 2001700 0 0 0 984510 369930 614570 2802400 1415300 1387100 0 0 0 0 0 0 0 0 0 6750 1637 7016 34101;34102 34234 34234 1 EISFAYEVLSNPEKR EYHPDKNPNAGDKFKEISFAYEVLSNPEKR EISFAYEVLSNPEKRELYDRYGEQGLREGS K E I K R E 1 1 1 0 0 0 3 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 15 1 1780.8996 O60884 O60884 49 63 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 3 0.00023111 44.294 By MS/MS By matching 1 1 1.0367 1.0275 4.7407 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0488 1.0626 NaN 1 0 Median 1.0247 0.99367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7593400 3873000 3720400 0 0 0 0 0 0 7119200 3605700 3513500 474220 267280 206940 0 0 0 0 0 0 6751 1637 7017 34103;34104 34235 34235 1 EISHVLNFLIR RRGVLANALAGRDEKEISHVLNFLIRNLSQ RDEKEISHVLNFLIRNLSQPRFAPVLINAA K E I I R N 0 1 1 0 0 0 1 0 1 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1339.7612 Q8TED0;H0Y8P4 Q8TED0 417 427 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00036308 71.223 By matching By MS/MS By MS/MS 1 1 1 1.3407 1.1433 10.585 3 Median NaN NaN NaN 0 0 Median 1.5326 1.3333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1469 1.1433 NaN 1 0 Median 1.3407 1.0885 NaN 1 0 Median 15664000 7171000 8492500 0 0 0 1399900 532680 867220 0 0 0 0 0 0 12800000 5961600 6838100 1463900 676740 787170 6752 1163 7018 34105;34106;34107 34236;34237 34236 2 EISIITSALR YDMFVNFPDQPVVWREISIITSALRNDSQD PVVWREISIITSALRNDSQDKQTQFLRSLF R E I L R N 1 1 0 0 0 0 1 0 0 3 1 0 0 0 0 2 1 0 0 0 0 0 10 0 1101.6394 Q9NVR2 Q9NVR2 79 88 INTS10 Integrator complex subunit 10 yes yes 2 0.0078107 60.828 By MS/MS 2 0.87782 0.90912 6.1427 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87782 0.90912 6.1427 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12363000 6713300 5649700 0 0 0 0 0 0 12363000 6713300 5649700 0 0 0 0 0 0 0 0 0 6753 4139 7019 34108;34109 34238;34239 34238 2 EISNLNQLIEEFKK KAQEIYEKNLDEKAKEISNLNQLIEEFKKN KEISNLNQLIEEFKKNADNNSSAFTALSEE K E I K K N 0 0 2 0 0 1 3 0 0 2 2 2 0 1 0 1 0 0 0 0 0 0 14 1 1703.9094 Q14789;E7EU81;H0Y867 Q14789 717 730 GOLGB1 Golgin subfamily B member 1 yes no 3 0.0045521 27.969 By MS/MS By matching 1 2 1.3654 1.4843 19.166 3 Median 1.3654 1.4843 NaN 1 0 Median 1.507 1.4526 27.047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10067000 4039100 6027900 4833300 1844300 2989100 5233600 2194800 3038800 0 0 0 0 0 0 0 0 0 0 0 0 6754 2900 7020 34110;34111;34112 34240 34240 1 EISNSDGTRPVGMLGK KSDVNKEYYTQNMEREISNSDGTRPVGMLG ISNSDGTRPVGMLGKATSTSDMLLKLARTT R E I G K A 0 1 1 1 0 0 1 3 0 1 1 1 1 0 1 2 1 0 0 1 0 0 16 1 1659.825 Q9NW64;E5RJW4 Q9NW64 124 139 RBM22 Pre-mRNA-splicing factor RBM22 yes no 2;3 0.00026009 78.903 By MS/MS By MS/MS 1 2 1.5898 1.5232 34.524 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6316 1.5591 NaN 1 1 Median 0.83474 0.85871 3.5121 2 1 Median NaN NaN NaN 0 0 Median 29659000 13319000 16340000 0 0 0 0 0 0 0 0 0 13961000 5764100 8196800 15698000 7555300 8142700 0 0 0 6755 4146 7021 34113;34114;34115 34241;34242;34243 34241 3 EISPGSGPGEIR VGKDERVITEEMNGKEISPGSGPGEIRKVE NGKEISPGSGPGEIRKVEPVTQKDSTSLSS K E I I R K 0 1 0 0 0 0 2 3 0 2 0 0 0 0 2 2 0 0 0 0 0 0 12 0 1197.599 O43491;E9PHY5;E9PK52;H0Y5B0;Q6R5J7;E9PMV8;E9PMG5 O43491 713 724 EPB41L2 Band 4.1-like protein 2 yes no 2 0.0019681 76.943 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6756 1573 7022 34116 34244 34244 1 EISYENTQISR SSNNVRISMINNPAKEISYENTQISRAIWA NPAKEISYENTQISRAIWAALQTQTSNAAK K E I S R A 0 1 1 0 0 1 2 0 0 2 0 0 0 0 0 2 1 0 1 0 0 0 11 0 1338.6416 Q9NYU2 Q9NYU2 802 812 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 1.2593E-21 166.09 By MS/MS By MS/MS By matching By matching By matching 3 2 1 2 2 1.2062 1.1585 30.929 10 Median 1.2765 1.2548 20.829 3 2 Median 1.989 1.6984 26.239 2 1 Median 0.92474 0.86784 NaN 1 0 Median 1.2993 1.091 26.527 2 0 Median NaN NaN NaN 0 0 Median 0.99518 0.83497 1.3646 2 0 Median 127790000 63354000 64440000 20895000 9668200 11227000 11723000 4325100 7397700 82924000 43815000 39110000 10379000 4634200 5745100 0 0 0 1872100 911510 960560 6757 4179 7023 34117;34118;34119;34120;34121;34122;34123;34124;34125;34126 34245;34246;34247;34248;34249 34245 5 EITALAPSTMK GGTTMYPGIADRMQKEITALAPSTMKIKII RMQKEITALAPSTMKIKIIAPPERKYSVWI K E I M K I 2 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 2 0 0 0 0 0 11 0 1160.6111 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76 P63261 316 326 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2 0.0001192 117.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 13 9 7 11 12 0.9894 0.87642 26.645 65 Median 0.97467 0.87745 18.547 15 3 Median 1.0701 0.89482 22.366 13 3 Median 0.7282 0.7241 31.208 8 3 Median 1.0419 0.89885 18.807 6 0 Plateau 0.91628 0.98722 14.935 11 0 Median 1.1112 0.90707 33.716 12 0 Median 9305200000 4702600000 4602600000 3262400000 1620900000 1641500000 2977600000 1424900000 1552700000 1918900000 1081400000 837510000 340330000 162020000 178310000 588200000 313150000 275040000 217780000 100250000 117540000 6758 2625;2630;2595 7024;7025 34127;34128;34129;34130;34131;34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145;34146;34147;34148;34149;34150;34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161;34162;34163;34164;34165;34166;34167;34168;34169;34170;34171;34172;34173;34174;34175;34176;34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193 34250;34251;34252;34253;34254;34255;34256;34257;34258;34259;34260;34261;34262;34263;34264;34265;34266;34267;34268;34269;34270;34271;34272;34273;34274;34275;34276;34277;34278;34279;34280;34281;34282;34283;34284;34285;34286;34287;34288;34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299;34300;34301;34302;34303;34304;34305;34306;34307;34308;34309;34310;34311;34312;34313;34314;34315;34316;34317;34318;34319;34320;34321;34322;34323;34324;34325;34326;34327;34328;34329;34330;34331;34332;34333;34334;34335;34336;34337;34338;34339;34340;34341;34342;34343;34344;34345;34346;34347;34348;34349;34350;34351;34352;34353;34354;34355;34356;34357;34358 34313 1259 109 EITALAPSTMKIK GGTTMYPGIADRMQKEITALAPSTMKIKII QKEITALAPSTMKIKIIAPPERKYSVWIGG K E I I K I 2 0 0 0 0 0 1 0 0 2 1 2 1 0 1 1 2 0 0 0 0 0 13 1 1401.7901 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76 P63261 316 328 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2;3 0.0014265 69.979 By MS/MS By matching By matching By matching 2 2 1 1 1.0595 0.98699 15.273 6 Median 1.0595 0.98699 6.5337 2 0 Median 1.1843 1.0773 5.0863 2 0 Median 0.68459 0.74602 NaN 1 0 Median 0.93588 0.83336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20113000 10075000 10038000 14804000 7151700 7652300 1492500 726880 765600 3605800 2096500 1509200 211230 100060 111170 0 0 0 0 0 0 6759 2625;2630;2595 7026 34194;34195;34196;34197;34198;34199 34359;34360;34361 34360 3 EITDIAAAAESLQPK SGPPTPGPTTLGPKKEITDIAAAAESLQPK EITDIAAAAESLQPKGYTLATTQVKTPIPL K E I P K G 4 0 0 1 0 1 2 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1555.8094 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 583 597 SRCAP Helicase SRCAP yes no 2 0.0073231 33.225 By MS/MS 1 0.8689 0.9468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8689 0.9468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2594400 1045300 1549100 0 0 0 0 0 0 2594400 1045300 1549100 0 0 0 0 0 0 0 0 0 6760 3199 7027 34200 34362 34362 1 EITDKITTDEMIK VVSADGKIAYPPGVKEITDKITTDEMIKRL VKEITDKITTDEMIKRLKMVVKTFMDMDQD K E I I K R 0 0 0 2 0 0 2 0 0 3 0 2 1 0 0 0 3 0 0 0 0 0 13 1 1535.7753 Q29RF7 Q29RF7 31 43 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 3.478E-06 115.18 By MS/MS 2 1.2088 1.3969 15.468 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2088 1.3969 15.468 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20297000 10374000 9922000 0 0 0 0 0 0 20297000 10374000 9922000 0 0 0 0 0 0 0 0 0 6761 3003 7028 34201;34202 34363;34364 34364 2 EITDKITTDEMIKR VVSADGKIAYPPGVKEITDKITTDEMIKRL KEITDKITTDEMIKRLKMVVKTFMDMDQDS K E I K R L 0 1 0 2 0 0 2 0 0 3 0 2 1 0 0 0 3 0 0 0 0 0 14 2 1691.8764 Q29RF7 Q29RF7 31 44 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3;4 0.00023986 78.486 By MS/MS 2 1.149 1.3093 0.21998 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.149 1.3093 0.21998 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43068000 18842000 24226000 0 0 0 0 0 0 43068000 18842000 24226000 0 0 0 0 0 0 0 0 0 6762 3003 7029 34203;34204 34365;34366;34367 34365 3 EITEGDEVEVYSR PFGDVRLPPPADYNKEITEGDEVEVYSRAN NKEITEGDEVEVYSRANEQEPCGWWLARVR K E I S R A 0 1 0 1 0 0 4 1 0 1 0 0 0 0 0 1 1 0 1 2 0 0 13 0 1524.6944 P51116;I3L1Z2 P51116 68 80 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2 0.0031812 61.353 By MS/MS By MS/MS 1 1 1.0955 0.94373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0955 0.94373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1283700 657050 626680 0 0 0 0 0 0 0 0 0 1283700 657050 626680 0 0 0 0 0 0 6763 2426 7030 34205;34206 34368;34369 34369 2 EITGIGPSTTTETETIAK VRIKIQHMELQLIKKEITGIGPSTTTETET GIGPSTTTETETIAKYEIMDGAPVKGESIP K E I A K Y 1 0 0 0 0 0 3 2 0 3 0 1 0 0 1 1 6 0 0 0 0 0 18 0 1847.9364 O75436;S4R3Q6 O75436 215 232 VPS26A Vacuolar protein sorting-associated protein 26A yes no 2 1.837E-15 110.29 By MS/MS By MS/MS 1 2 0.94304 1.0019 26.983 3 Median 0.80934 0.74667 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1222 1.1324 17.313 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31990000 16199000 15790000 22283000 12067000 10216000 0 0 0 9706500 4131900 5574600 0 0 0 0 0 0 0 0 0 6764 1671 7031 34207;34208;34209 34370;34371;34372;34373 34370 4 EITKPLRPLGK PILQEGGVPMGELFREITKPLRPLGKAASL ELFREITKPLRPLGKAASLLLEILGLLCKS R E I G K A 0 1 0 0 0 0 1 1 0 1 2 2 0 0 2 0 1 0 0 0 0 0 11 2 1250.7711 E7EX73;E9PGM1;E7EUU4;Q04637;H7C0V6 E7EX73 1198 1208 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 0.00024402 63.426 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 7 2 7 1 2 0.80904 0.86146 21.356 23 Median 0.7732 0.84754 14.377 4 0 Median 0.90114 0.8946 20.742 7 0 Median 0.8993 1.1537 17.026 2 0 Median 0.76896 0.86146 11.536 7 0 Median 1.3182 1.5497 NaN 1 0 Median 0.75538 0.7496 9.8555 2 0 Median 75254000 40924000 34330000 16993000 9737700 7254900 28855000 15475000 13380000 7479200 3879100 3600100 11121000 5994400 5126400 2503400 984670 1518700 8302500 4853200 3449300 6765 894 7032 34210;34211;34212;34213;34214;34215;34216;34217;34218;34219;34220;34221;34222;34223;34224;34225;34226;34227;34228;34229;34230;34231;34232 34374;34375;34376;34377;34378;34379;34380;34381;34382;34383;34384;34385;34386 34377 12 EITLENKDNIR TYHNTGITGITEAVKEITLENKDNIRLQDC EAVKEITLENKDNIRLQDCSALCEEEEDED K E I I R L 0 1 2 1 0 0 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1343.7045 Q9NT62;C9JNW8 Q9NT62 125 135 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes no 3 5.4682E-05 79.659 By MS/MS By MS/MS 1 1 1.076 0.96997 NaN 1 Median NaN NaN NaN 0 0 Median 1.076 0.96997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3568800 1853400 1715400 0 0 0 3568800 1853400 1715400 0 0 0 0 0 0 0 0 0 0 0 0 6766 4106 7033 34233;34234 34387;34388 34388 2 EITSLHER KRYEMLQDNVEGYRREITSLHERNQKLTAT NVEGYRREITSLHERNQKLTATTQKQEQII R E I E R N 0 1 0 0 0 0 2 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 8 0 983.50361 P12270 P12270 738 745 TPR Nucleoprotein TPR yes yes 2 0.0082924 63.48 By MS/MS By matching 2 1 1.0576 0.99067 18.974 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97076 1.0789 12.064 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90557 0.80442 NaN 1 0 Median 2168900 1085600 1083300 0 0 0 0 0 0 1771500 898780 872670 0 0 0 0 0 0 397480 186860 210620 6767 1978 7034 34235;34236;34237 34389 34389 1 EITTEGQVQVLK TYAVGLCQSFCELLKEITTEGQVQVLKVVE LLKEITTEGQVQVLKVVENALKVNPILGPQ K E I L K V 0 0 0 0 0 2 2 1 0 1 1 1 0 0 0 0 2 0 0 2 0 0 12 0 1343.7296 Q9UI26;F8WDV0 Q9UI26 739 750 IPO11 Importin-11 yes no 2 0.034954 26.889 By MS/MS By matching 1 1 0.97457 0.89955 7.8524 2 Median 0.87323 0.85097 NaN 1 0 Median 1.0877 0.95091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10637000 5301600 5335100 5454800 3091300 2363500 5181900 2210300 2971600 0 0 0 0 0 0 0 0 0 0 0 0 6768 4288 7035 34238;34239 34390 34390 1 EIVETFANK HMLLNLSRGKQDFLKEIVETFANKSGQSAL KQDFLKEIVETFANKSGQSALYDALFSSQS K E I N K S 1 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1049.5393 P49792 P49792 371 379 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00074939 100.39 By MS/MS By MS/MS By MS/MS 2 2 1 0.99451 0.99089 11.266 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8428 0.90209 16.023 2 1 Median 1.0436 1.03 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1344 0.97183 NaN 1 0 Median 47373000 23373000 24000000 0 0 0 0 0 0 35982000 17938000 18044000 7315700 3717400 3598300 0 0 0 4074800 1717900 2356900 6769 2401 7036 34240;34241;34242;34243;34244 34391;34392;34393;34394;34395;34396;34397 34392 7 EIVEVKEENIEDATEK KNGEAKITEAPASEKEIVEVKEENIEDATE IVEVKEENIEDATEKGGEKKEAVAAEVKNE K E I E K G 1 0 1 1 0 0 6 0 0 2 0 2 0 0 0 0 1 0 0 2 0 0 16 1 1873.9157 Q5JSL0;Q5JSK6;P82970;Q5JSK9 Q5JSL0 96 111 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 yes no 2;3 5.5542E-07 88.73 By MS/MS By MS/MS 3 1 0.91952 0.96518 26.542 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86961 0.91068 14.392 3 1 Median 1.4405 1.4398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30580000 17554000 13026000 0 0 0 0 0 0 24880000 15249000 9630400 5700300 2304300 3396100 0 0 0 0 0 0 6770 2660 7037 34245;34246;34247;34248 34398;34399;34400;34401;34402;34403;34404 34401 7 EIVEVLDGR AHLKLERLENECEIREIVEVLDGRKPTGGK NECEIREIVEVLDGRKPTGGKLEVKVRLRE R E I G R K 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1028.5502 H7C1U3;H0Y517;Q5T0F9 H7C1U3 627 635 CC2D1B Coiled-coil and C2 domain-containing protein 1B yes no 2 0.0098224 48.794 By MS/MS 1 1.714 1.4624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.714 1.4624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1018800 390840 627970 0 0 0 0 0 0 0 0 0 1018800 390840 627970 0 0 0 0 0 0 6771 1260 7038 34249 34405;34406 34405 2 EIVGASTNWR KQGIFHIHEVRDKLREIVGASTNWRDHVKA RDKLREIVGASTNWRDHVKAMEERKLLHSF R E I W R D 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 10 0 1131.5673 Q9Y305 Q9Y305 46 55 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 1.9935E-10 174.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2833 1.0743 15.205 5 Median 0.93054 0.86551 NaN 1 0 Median 1.3049 1.1153 5.2986 2 0 Median 0.91705 0.89718 NaN 1 0 Median 1.4156 1.2165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 186010000 87091000 98924000 60526000 31234000 29292000 67519000 28351000 39169000 23408000 12554000 10854000 34561000 14952000 19610000 0 0 0 0 0 0 6772 4400 7039 34250;34251;34252;34253;34254 34407;34408;34409;34410;34411;34412;34413;34414 34414 8 EIVGASTNWRDHVK KQGIFHIHEVRDKLREIVGASTNWRDHVKA REIVGASTNWRDHVKAMEERKLLHSFLAKS R E I V K A 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 1 1 1 0 2 0 0 14 1 1610.8165 Q9Y305 Q9Y305 46 59 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 3 0.00069385 44.511 By MS/MS 1 0.97322 0.97124 NaN 1 Median 0.97322 0.97124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6705400 3142600 3562800 6705400 3142600 3562800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6773 4400 7040 34255 34415;34416 34416 2 EIVHIQAGQCGNQIGTK ______________________________ VHIQAGQCGNQIGTKFWEVISDEHGIDPAG R E I T K F 1 0 1 0 1 3 1 3 1 3 0 1 0 0 0 0 1 0 0 1 0 0 17 0 1851.9261 Q9BUF5;K7ESM5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 3 19 TUBB6 Tubulin beta-6 chain yes no 3 0.0078028 40.693 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6774 3838 7041 34256 34417 34417 1 EIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG R E I A K F 2 0 1 0 1 3 1 3 1 2 1 1 0 0 0 0 0 0 0 1 0 0 17 0 1821.9156 P04350;M0R2D3;M0QY85;M0R278;M0R0X0;M0QY37;M0QX14;M0QZL7;M0QYM7;M0R042;M0R2T4;P68371 P68371 3 19 TUBB4A;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 2;3 1.0122E-14 116.55 By MS/MS By MS/MS By matching By MS/MS 2 5 1 2 1.0982 0.96634 11.682 10 Median 1.0434 0.97481 5.7864 2 0 Median 1.0884 0.89627 10.165 5 3 Median NaN NaN NaN 0 0 Median 1.4173 1.2181 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1545 0.94774 7.4303 2 2 Median 259770000 119010000 140750000 29503000 14314000 15189000 212720000 96586000 116140000 0 0 0 2012700 871610 1141100 0 0 0 15527000 7239600 8287600 6775 2634;1849 7042 34257;34258;34259;34260;34261;34262;34263;34264;34265;34266 34418;34419;34420;34421;34422;34423;34424;34425;34426;34427;34428;34429;34430;34431;34432;34433 34430 16 EIVLADVIDNDSWR LVDMKIEFGVDVTTKEIVLADVIDNDSWRL KEIVLADVIDNDSWRLWPSGDRSQQKDKQS K E I W R L 1 1 1 3 0 0 1 0 0 2 1 0 0 0 0 1 0 1 0 2 0 0 14 0 1643.8155 P22234;E9PBS1;D6RF62 P22234 202 215 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 7.2446E-06 154.15 By matching By MS/MS By MS/MS 1 2 1 1.2307 1.0394 11.873 4 Linear 0.87974 0.84499 NaN 1 0 Median 1.2355 1.0562 6.0522 2 0 Median 1.0754 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62819000 27798000 35021000 235320 106090 129230 54953000 23845000 31108000 7631000 3847100 3783900 0 0 0 0 0 0 0 0 0 6776 909 7043 34267;34268;34269;34270 34434;34435;34436;34437;34438;34439;34440 34437 7 EIVNFSPIAR HEKLTVDEWKQHIYKEIVNFSPIARKDSRR QHIYKEIVNFSPIARKDSRRRSGMKL____ K E I A R K 1 1 1 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1144.6241 O15264 O15264 345 354 MAPK13 Mitogen-activated protein kinase 13 yes yes 2 0.00040727 76.827 By MS/MS By MS/MS By matching 1 1 1 0.88149 0.88758 6.1205 3 Median 0.88149 0.88758 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77512 0.84326 NaN 1 0 Median 1.0767 0.95257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11746000 6464600 5281100 2115900 1476200 639660 0 0 0 8822700 4614200 4208500 807170 374190 432990 0 0 0 0 0 0 6777 1535 7044 34271;34272;34273 34441;34442 34442 2 EIVNNIR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP KIPNFDVREIVNNIRRLMDGEEPLPMLPSY R E I I R R 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 P11388 P11388 871 877 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0068426 91.584 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.1882 1.09 13.228 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96126 1.0493 5.3738 2 0 Median 1.1882 1.0443 NaN 1 0 Median 1.2933 1.3486 14.539 2 0 Median 1.3797 1.1312 5.9984 2 1 Median 32768000 13672000 19096000 0 0 0 0 0 0 4966800 2377600 2589100 1342300 532360 809970 16151000 6651500 9499100 10309000 4110400 6198200 6778 1963 7045 34274;34275;34276;34277;34278;34279;34280 34443;34444;34445;34446;34447;34448;34449;34450 34445 8 EIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP IPNFDVREIVNNIRRLMDGEEPLPMLPSYK R E I R R L 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 8 1 1012.5778 P11388 P11388 871 878 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.038343 41.502 By MS/MS 2 1.4212 1.2659 4.1024 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4212 1.2659 4.1024 2 0 Median 2165100 825750 1339400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2165100 825750 1339400 6779 1963 7046 34281;34282 34451 34451 1 EIVQQVK IGHFFASQTAQRKIREIVQQVKQQEQKYPQ QTAQRKIREIVQQVKQQEQKYPQGVASQRS R E I V K Q 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 7 0 842.48617 F8W930;Q9Y6M1 F8W930 583 589 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.018771 62.338 By matching By MS/MS 1 1 1.0107 0.92468 23.094 2 Median 0.81038 0.78537 NaN 1 0 Median 1.2606 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3138700 1440700 1698000 980930 524220 456710 2157800 916480 1241300 0 0 0 0 0 0 0 0 0 0 0 0 6780 1088 7047 34283;34284 34452;34453 34453 2 EIVSDVIDGNEQLSVVR GLNTGRWLVLDTETREIVSDVIDGNEQLSV VSDVIDGNEQLSVVRYSPDGLYLAIGSHDN R E I V R Y 0 1 1 2 0 1 2 1 0 2 1 0 0 0 0 2 0 0 0 4 0 0 17 0 1870.9636 G3V195;B7WPE2;Q32P44;G3V1D0;H0Y3M3 G3V195 454 470 EML3 Echinoderm microtubule-associated protein-like 3 yes no 2 0.054844 32.498 By MS/MS 1 0.89241 0.957 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89241 0.957 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1368400 735590 632800 0 0 0 0 0 0 1368400 735590 632800 0 0 0 0 0 0 0 0 0 6781 628 7048 34285 34454 34454 1 EIVSLIEAQTAK NMLTILAEENLPFAKEIVSLIEAQTAKAPS FAKEIVSLIEAQTAKAPSSEKLPVMYLMDS K E I A K A 2 0 0 0 0 1 2 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1300.7238 O94913;E9PKN0;E9PQ01;E9PQF9 O94913 53 64 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 2 0.0015234 51.927 By matching By MS/MS By matching 1 2 1 0.86992 0.92526 9.3421 4 Median NaN NaN NaN 0 0 Median 1.1313 0.97955 NaN 1 0 Median 0.85172 0.92526 0.65164 2 0 Median 0.87525 0.78863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10165000 5690700 4474200 0 0 0 531740 281670 250060 9467700 5318400 4149300 165460 90621 74836 0 0 0 0 0 0 6782 1736 7049 34286;34287;34288;34289 34455 34455 1 EIVTDKQDALDFKK KILRQLIHRSVVNMKEIVTDKQDALDFKKD KEIVTDKQDALDFKKDKGAFYLVFEYMDHD K E I K K D 1 0 0 3 0 1 1 0 0 1 1 3 0 1 0 0 1 0 0 1 0 0 14 2 1648.8672 Q9NYV4;J3QSD7;A0A590UJE9 Q9NYV4 791 804 CDK12 Cyclin-dependent kinase 12 yes no 3 0.0005005 48.112 By matching By MS/MS 1 1 1.0835 1.1991 14.205 2 Median 1.2542 1.3258 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93604 1.0845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16688000 8029200 8659200 6216300 2832000 3384200 0 0 0 10472000 5197200 5274900 0 0 0 0 0 0 0 0 0 6783 4180 7050 34290;34291 34456 34456 1 EIVVIHQDPEALK VIRDRKTIPIKYPLKEIVVIHQDPEALKDI LKEIVVIHQDPEALKDIKSLEKYIIEELNV K E I L K D 1 0 0 1 0 1 2 0 1 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1489.814 P41252;A0A0A0MSX9;J3KR24 P41252 849 861 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 0.00033523 63.283 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.87161 0.74867 20.029 5 Median 0.71297 0.69571 NaN 1 0 Median 0.98852 0.83835 2.3325 2 0 Median 0.47609 0.51598 NaN 1 0 Median 0.87161 0.74867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27909000 15283000 12626000 4877200 2799400 2077800 15694000 7818500 7875100 3854000 2697000 1157000 3483900 1967800 1516100 0 0 0 0 0 0 6784 2302 7051 34292;34293;34294;34295;34296 34457;34458;34459;34460;34461 34460 5 EIVVIHQDPEALKDIK VIRDRKTIPIKYPLKEIVVIHQDPEALKDI IVVIHQDPEALKDIKSLEKYIIEELNVRKV K E I I K S 1 0 0 2 0 1 2 0 1 3 1 2 0 0 1 0 0 0 0 2 0 0 16 1 1846.02 P41252;A0A0A0MSX9;J3KR24 P41252 849 864 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.00030122 40.237 By MS/MS 1 1.0492 1.1008 NaN 1 Median 1.0492 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8512100 4287500 4224600 8512100 4287500 4224600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6785 2302 7052 34297 34462 34462 1 EIVVLETLEDIDK EFTAFLHPEEFEHMKEIVVLETLEDIDKNG MKEIVVLETLEDIDKNGDGFVDQDEYIADM K E I D K N 0 0 0 2 0 0 3 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 13 0 1514.808 Q15293;E9PP27 Q15293 205 217 RCN1 Reticulocalbin-1 yes no 2 7.4802E-07 124.1 By MS/MS By MS/MS 1 1 1.1254 1.0964 8.2981 2 Median NaN NaN NaN 0 0 Median 1.2145 1.034 NaN 1 0 Median 1.0428 1.1627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53648000 23991000 29657000 0 0 0 51614000 23047000 28567000 2033800 943890 1090000 0 0 0 0 0 0 0 0 0 6786 2940 7053 34298;34299 34463;34464;34465;34466;34467 34467 5 EIYENMAPGENKR PKPLKFLRPHYGKLKEIYENMAPGENKRFA LKEIYENMAPGENKRFAADIISVLAMTMSG K E I K R F 1 1 2 0 0 0 3 1 0 1 0 1 1 0 1 0 0 0 1 0 0 0 13 1 1549.7195 Q13200;C9JPC0;H7C2Q3 Q13200 108 120 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.0059573 28.297 By matching By MS/MS 1 1 0.90614 0.92206 2.9897 2 Median 0.90882 0.94176 NaN 1 0 Median 0.90347 0.90277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4321100 1963500 2357600 1856000 867570 988460 2465100 1096000 1369200 0 0 0 0 0 0 0 0 0 0 0 0 6787 2796 7054 34300;34301 34468 34468 1 EIYHFTLEK DFCTHLPNLPDSTAKEIYHFTLEKIQPRVI PDSTAKEIYHFTLEKIQPRVISFEEQVASI K E I E K I 0 0 0 0 0 0 2 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1178.5972 D6RAX7;Q9BT78;D6RFN0 D6RAX7 83 91 COPS4 COP9 signalosome complex subunit 4 yes no 2 0.00082536 95.815 By MS/MS By matching By MS/MS 1 1 1 1.2366 1.1944 22.142 3 Plateau 1.1438 1.0569 NaN 1 0 Median 1.0112 0.86763 NaN 1 0 Median 1.3073 1.3499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39378000 18125000 21253000 16739000 7912100 8826600 916880 525030 391850 21723000 9687800 12035000 0 0 0 0 0 0 0 0 0 6788 813 7055 34302;34303;34304 34469;34470 34470 2 EKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSR ATNLPQLKELYQLSKEKADFTVVAGDEGSS SSEENKGPSGSAVSRKAPSKPSASTKKAEG K E K S R K 3 1 1 2 0 0 4 6 0 0 0 2 0 1 1 7 3 0 0 3 0 0 34 2 3299.5026 P49916 P49916 834 867 LIG3 DNA ligase 3 yes yes 4 1.2561E-73 134.78 By MS/MS By MS/MS 1 2 0.87768 0.96462 15.054 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60867 0.75827 NaN 1 0 Median 0.88999 0.98228 2.566 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48210000 26397000 21813000 0 0 0 0 0 0 35106000 19820000 15286000 13104000 6577200 6526700 0 0 0 0 0 0 6789 2406 7056 34305;34306;34307 34471;34472;34473;34474 34471 4 EKAEALEDLVGFK LGNLPGSKRQPQTPKEKAEALEDLVGFKEL PKEKAEALEDLVGFKELFQTPGHTEESMTD K E K F K E 2 0 0 1 0 0 3 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1447.7559 P46013 P46013 2429 2441 MKI67 Antigen KI-67 yes yes 2;3 0.00023623 77.64 By MS/MS By matching By matching 3 2 1 1.146 1.2618 12.462 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1408 1.2957 5.4087 3 0 Median 1.1377 1.0702 3.4602 2 0 Median 1.3759 1.4348 NaN 1 0 Median NaN NaN NaN 0 0 Median 19161000 8547400 10614000 0 0 0 0 0 0 17618000 7848800 9769100 922910 392390 530530 620310 306220 314090 0 0 0 6790 2335 7057 34308;34309;34310;34311;34312;34313 34475;34476;34477;34478;34479 34475 5 EKAEGDVAALNR AQGLQRELDGERERREKAEGDVAALNRRIQ ERREKAEGDVAALNRRIQLVEEELDRAQER R E K N R R 3 1 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 12 1 1271.647 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90 P67936 43 54 TPM4 Tropomyosin alpha-4 chain yes no 3 0.01744 38.021 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6791 2629 7058 34314 34480 34480 1 EKAEGDVAALNRR AQGLQRELDGERERREKAEGDVAALNRRIQ RREKAEGDVAALNRRIQLVEEELDRAQERL R E K R R I 3 2 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 13 2 1427.7481 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90 P67936 43 55 TPM4 Tropomyosin alpha-4 chain yes no 3 0.033016 20.84 By MS/MS By matching 1 1 0.9216 0.90797 15.174 2 Median 0.96444 1.0108 NaN 1 0 Median 0.88066 0.81559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2759000 1386400 1372600 1757200 840850 916310 1001800 545550 456250 0 0 0 0 0 0 0 0 0 0 0 0 6792 2629 7059 34315;34316 34481;34482 34481 2 EKANGTTVHVGIHPSK VYRKKYVIYIERVQREKANGTTVHVGIHPS KANGTTVHVGIHPSKVVITRLKLDKDRKKI R E K S K V 1 0 1 0 0 0 1 2 2 1 0 2 0 0 1 1 2 0 0 2 0 0 16 1 1673.8849 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KS10 P61254 88 103 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 4 0.055667 11.115 By matching By MS/MS By matching 2 2 1 0.88856 0.88414 9.7234 5 Median 0.9138 0.93063 3.7382 2 0 Median 0.88467 0.79786 11.045 2 0 Median 0.85829 0.88414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1906800 894680 1012100 752550 337810 414740 915950 439980 475970 238260 116890 121360 0 0 0 0 0 0 0 0 0 6793 2554 7060 34317;34318;34319;34320;34321 34483;34484 34484 2 EKAQALEDLAGFK AGTLPGSKRQLQTPKEKAQALEDLAGFKEL PKEKAQALEDLAGFKELFQTPGHTEELVAA K E K F K E 3 0 0 1 0 1 2 1 0 0 2 2 0 1 0 0 0 0 0 0 0 0 13 1 1418.7405 P46013 P46013 1216 1228 MKI67 Antigen KI-67 yes no 2;3 0.00031101 90.653 By MS/MS 3 1.1222 1.2724 6.4203 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1222 1.2724 6.4203 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32934000 15681000 17253000 0 0 0 0 0 0 32934000 15681000 17253000 0 0 0 0 0 0 0 0 0 6794 2335 7061 34322;34323;34324 34485;34486;34487 34485 3 EKAQALEELTGFR PGNLPGSNRRLQTRKEKAQALEELTGFREL RKEKAQALEELTGFRELFQTPCTDNPTTDE K E K F R E 2 1 0 0 0 1 3 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 1 1490.7729 P46013 P46013 1824 1836 MKI67 Antigen KI-67 yes yes 2;3 1.6683E-07 107.17 By MS/MS By matching 2 1 1.1581 1.3433 57.96 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.095 1.269 8.0476 2 1 Median 3.0895 3.4462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18937000 8799800 10137000 0 0 0 0 0 0 18686000 8726900 9958600 251540 72857 178680 0 0 0 0 0 0 6795 2335 7062 34325;34326;34327 34488;34489;34490 34488 3 EKDEMVEQEFNR QKCPLYEANGQAVPKEKDEMVEQEFNRLLE VPKEKDEMVEQEFNRLLEATSYLSHQLDFN K E K N R L 0 1 1 1 0 1 4 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 12 1 1552.6828 O60341;R4GMQ1 O60341 373 384 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 1.6143E-06 120.09 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.1281 1.1178 16.857 6 Median 1.1533 1.193 NaN 1 0 Median 1.1035 1.0473 NaN 1 0 Median 0.87701 0.99451 4.3934 2 0 Median 1.4719 1.4145 5.3618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29193000 14034000 15159000 1199500 617610 581940 1846600 888340 958290 19502000 9977400 9524500 6645300 2550900 4094400 0 0 0 0 0 0 6796 1613 7063 34328;34329;34330;34331;34332;34333 34491;34492;34493;34494;34495;34496 34491 6 EKDIQEESTFSSR GGLLSPARLYAIAAKEKDIQEESTFSSRKI AKEKDIQEESTFSSRKISNQFDWALMRLDL K E K S R K 0 1 0 1 0 1 3 0 0 1 0 1 0 1 0 3 1 0 0 0 0 0 13 1 1554.7162 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 65 77 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 0.00012543 153.95 By MS/MS By MS/MS By MS/MS 2 2 2 1.3585 1.2787 20.438 6 Median 1.1378 1.1848 1.2566 2 0 Median 1.5648 1.44 17.753 2 0 Median NaN NaN NaN 0 0 Median 1.6525 1.5881 29.7 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67732000 27678000 40053000 16859000 7963300 8895300 47649000 18554000 29095000 0 0 0 3223800 1160600 2063200 0 0 0 0 0 0 6797 2315 7064 34334;34335;34336;34337;34338;34339 34497;34498;34499;34500;34501;34502;34503;34504;34505;34506 34501 10 EKDQADFR FKVQQAREMVLEIIREKDQADFRGVRGDFN MVLEIIREKDQADFRGVRGDFNSRMGGGSI R E K F R G 1 1 0 2 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 8 1 1007.4672 Q96I24 Q96I24 234 241 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.056346 56.011 By MS/MS By matching 2 1 0.97292 1.0345 2.6826 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97277 1.051 2.2385 2 0 Median NaN NaN NaN 0 0 Median 0.97859 1.0123 NaN 1 0 Median NaN NaN NaN 0 0 Median 2263600 1153900 1109600 0 0 0 0 0 0 1649100 850960 798100 0 0 0 614530 302980 311540 0 0 0 6798 3673 7065 34340;34341;34342 34507 34507 1 EKDQLSQSIVMYK YNDVKKQQQMAALTKEKDQLSQSIVMYKSL TKEKDQLSQSIVMYKSLFEASQQLLNEMKC K E K Y K S 0 0 0 1 0 2 1 0 0 1 1 2 1 0 0 2 0 0 1 1 0 0 13 1 1567.7916 A6NHR9;J3KTL8 A6NHR9 1629 1641 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2;3 7.5607E-06 110.86 By MS/MS By MS/MS 2 1 0.80039 0.92861 8.1544 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7994 0.92653 0.31754 2 2 Median 0.85677 0.80453 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36989000 20360000 16629000 0 0 0 0 0 0 34281000 18971000 15310000 2707700 1388900 1318800 0 0 0 0 0 0 6799 518 7066 34343;34344;34345 34508;34509;34510 34508 3 EKDSPHMQDPNQADEEAMTQIIR MARKRGEGGRFFSPKEKDSPHMQDPNQADE DPNQADEEAMTQIIRVS_____________ K E K I R V 2 1 1 3 0 3 3 0 1 2 0 1 2 0 2 1 1 0 0 0 0 0 23 1 2682.2014 P23511 P23511 323 345 NFYA Nuclear transcription factor Y subunit alpha yes yes 4 1.2507E-11 53.779 By MS/MS By matching 3 1 0.64219 0.63466 25.155 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56808 0.57539 30.661 3 2 Median 0.72597 0.70003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26252000 15638000 10614000 0 0 0 0 0 0 24918000 14903000 10016000 1333800 735440 598310 0 0 0 0 0 0 6800 2115 7067 34346;34347;34348;34349 34511;34512;34513 34513 3 EKDTAVQGNIR IQVCTQLQVLTEAFREKDTAVQGNIRLSFE EAFREKDTAVQGNIRLSFEDFVTMTASRML R E K I R L 1 1 1 1 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 11 1 1229.6364 Q9UBV8 Q9UBV8 259 269 PEF1 Peflin yes yes 3 0.049733 17.809 By MS/MS 1 1.1463 1.1247 NaN 1 Median 1.1463 1.1247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 393850 179440 214410 393850 179440 214410 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6801 4251 7068 34350 34514 34514 1 EKDVQFEHGYR RLELYSNRDSDDKKKEKDVQFEHGYRLGFT DKKKEKDVQFEHGYRLGFTDVNKIYLHNHL K E K Y R L 0 1 0 1 0 1 2 1 1 0 0 1 0 1 0 0 0 0 1 1 0 0 11 1 1406.6579 A0A0C4DFM1;Q92544 A0A0C4DFM1 141 151 TM9SF4 Transmembrane 9 superfamily member 4 yes no 3 0.011527 29.341 By MS/MS 1 1.4144 1.3286 NaN 1 Median NaN NaN NaN 0 0 Median 1.4144 1.3286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3700300 1461200 2239100 0 0 0 3700300 1461200 2239100 0 0 0 0 0 0 0 0 0 0 0 0 6802 229 7069 34351 34515 34515 1 EKEDAQEVELQEGK GLTKESPDTNGPKQKEKEDAQEVELQEGKV KEKEDAQEVELQEGKVHSESDKAITPQAQE K E K G K V 1 0 0 1 0 2 5 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 14 1 1630.7686 Q02952 Q02952 1737 1750 AKAP12 A-kinase anchor protein 12 yes yes 3 3.6589E-07 84.753 By MS/MS 4 1.0646 1.0171 7.8214 3 Median NaN NaN NaN 0 0 Median 1.0646 1.0171 7.8214 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7030300 4141700 2888500 0 0 0 7030300 4141700 2888500 0 0 0 0 0 0 0 0 0 0 0 0 6803 2705 7070 34352;34353;34354;34355 34516;34517 34517 2 EKEEEELMEKPQK DFALLQKVRAEIASKEKEEEELMEKPQKET SKEKEEEELMEKPQKETKKDEDPENKIEFK K E K Q K E 0 0 0 0 0 1 6 0 0 0 1 3 1 0 1 0 0 0 0 0 0 0 13 2 1645.7869 Q13123;E7EQZ7;D6REL4 Q13123 182 194 IK Protein Red yes no 3;4 0.0004409 55.314 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 5 3 3 0.9105 0.87187 31.675 16 Median 1.5909 1.5202 51.724 2 0 Median 1.0356 0.99427 NaN 1 0 Median 0.84064 0.97188 6.7858 2 0 Median 0.98117 0.88285 13.791 5 0 Median 0.70902 0.79046 22.484 3 0 Plateau 0.74314 0.7279 7.4562 3 0 Median 34865000 18018000 16847000 4107900 1151900 2956100 980360 433620 546740 9887700 5318800 4568900 5202400 2520800 2681600 13183000 7807600 5375400 1503900 785320 718530 6804 2787 7071 34356;34357;34358;34359;34360;34361;34362;34363;34364;34365;34366;34367;34368;34369;34370;34371 34518;34519;34520;34521;34522;34523;34524;34525;34526;34527 34524 10 EKEEFAVPENSSVQQFK SAEPKIMKVTVKTPKEKEEFAVPENSSVQQ EEFAVPENSSVQQFKEEISKRFKSHTDQLV K E K F K E 1 0 1 0 0 2 4 0 0 0 0 2 0 2 1 2 0 0 0 2 0 0 17 1 1994.9585 Q9UHD9;Q9UMX0 Q9UMX0 46 62 UBQLN2;UBQLN1 Ubiquilin-2;Ubiquilin-1 no no 2;3 1.8952E-23 186.58 By MS/MS By matching By matching 2 2 1 0.99554 0.93918 11.503 5 Median 0.88499 0.82799 17.82 2 0 Median 1.0157 0.95503 2.2336 2 0 Median NaN NaN NaN 0 0 Median 0.98166 0.90642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43971000 23526000 20445000 38184000 20676000 17508000 4505500 2230000 2275500 0 0 0 1281400 620210 661160 0 0 0 0 0 0 6805 4335;4277 7072 34372;34373;34374;34375;34376 34528;34529;34530 34530 3 EKEELEEIR DREKEMEADERDRKREKEELEEIRQRLLAE ERDRKREKEELEEIRQRLLAEGHPDPDAEL R E K I R Q 0 1 0 0 0 0 5 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1173.5877 P49756 P49756 539 547 RBM25 RNA-binding protein 25 yes yes 2 0.015345 88.948 By MS/MS By MS/MS 2 1 1.0257 1.163 9.2811 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0257 1.163 9.2811 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9900800 4723500 5177300 0 0 0 0 0 0 9900800 4723500 5177300 0 0 0 0 0 0 0 0 0 6806 2397 7073 34377;34378;34379 34531;34532;34533 34532 3 EKEELEEIRQR DREKEMEADERDRKREKEELEEIRQRLLAE DRKREKEELEEIRQRLLAEGHPDPDAELQR R E K Q R L 0 2 0 0 0 1 5 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 2 1457.7474 P49756 P49756 539 549 RBM25 RNA-binding protein 25 yes yes 3 0.027137 23.749 By MS/MS By matching By matching 1 1 1 1.0676 1.1768 11.721 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88365 0.99616 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0676 1.2489 NaN 1 0 Median 1.3576 1.1768 NaN 1 0 Median 14795000 7238400 7556900 0 0 0 0 0 0 11547000 5519800 6027700 0 0 0 2595400 1434500 1160900 652430 284100 368330 6807 2397 7074 34380;34381;34382 34534 34534 1 EKEELMER KKREMAEKEKEKIEREKEELMERLKQIEEQ EKEKIEREKEELMERLKQIEEQTKKAQQEL R E K E R L 0 1 0 0 0 0 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 1 1062.5016 P26038;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 343 350 MSN;RDX Moesin;Radixin no no 2 0.0093253 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.1887 1.1455 9.1144 9 Median 1.0894 1.1068 2.4572 2 0 Median 1.2077 1.1496 0.5109 2 0 Median 1.1126 1.2046 16.451 2 0 Median 1.2026 1.1205 3.9129 2 0 Median 1.2338 1.3706 NaN 1 0 Median NaN NaN NaN 0 0 Median 101620000 47363000 54257000 19777000 9540100 10237000 29203000 13349000 15853000 46209000 22051000 24158000 5243700 2064800 3178900 1188900 358700 830180 0 0 0 6808 2139;2235 7075 34383;34384;34385;34386;34387;34388;34389;34390;34391 34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545;34546 34543 12 EKEELMLR KRRETVEREKEQMMREKEELMLRLQDYEEK EKEQMMREKEELMLRLQDYEEKTKKAEREL R E K L R L 0 1 0 0 0 0 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 8 1 1046.543 P15311;E7EQR4 P15311 343 350 EZR Ezrin yes no 2 0.011321 124.08 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1082 1.0904 15.282 6 Median 1.1047 1.1341 NaN 1 0 Median 1.0653 1.0138 12.353 2 0 Median 1.1833 1.2593 NaN 1 0 Median 1.0184 0.94004 18.921 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74872000 34952000 39920000 8585700 3915100 4670700 20995000 9558500 11437000 31220000 14728000 16492000 14071000 6750300 7320900 0 0 0 0 0 0 6809 879 7076 34392;34393;34394;34395;34396;34397 34547;34548;34549;34550;34551;34552;34553;34554;34555 34554 9 EKEELVLELQTAK DNIKELELEVINLQKEKEELVLELQTAKKD QKEKEELVLELQTAKKDANQAKLSERRRKR K E K A K K 1 0 0 0 0 1 4 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 13 1 1528.8348 O95239 O95239 574 586 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 3.4358E-05 84.734 By MS/MS By MS/MS 1 1 1.1423 1.1973 17.714 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91598 1.0563 NaN 1 0 Median 1.4246 1.3571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10194000 5463600 4730100 0 0 0 0 0 0 8192800 4377600 3815200 2000900 1085900 914970 0 0 0 0 0 0 6810 1757 7077 34398;34399 34556;34557;34558;34559 34556 4 EKEELVLELQTAKK DNIKELELEVINLQKEKEELVLELQTAKKD KEKEELVLELQTAKKDANQAKLSERRRKRL K E K K K D 1 0 0 0 0 1 4 0 0 0 3 3 0 0 0 0 1 0 0 1 0 0 14 2 1656.9298 O95239 O95239 574 587 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 8.6074E-05 95.981 By MS/MS 1 0.67889 0.81579 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67889 0.81579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16979000 10193000 6785500 0 0 0 0 0 0 16979000 10193000 6785500 0 0 0 0 0 0 0 0 0 6811 1757 7078 34400 34560 34560 1 EKEFQEELSR AESARCSLEQKIKEKEKEFQEELSRQQRSF KIKEKEKEFQEELSRQQRSFQTLDQECIQM K E K S R Q 0 1 0 0 0 1 4 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1293.6201 P49454 P49454 393 402 CENPF Centromere protein F yes yes 3 0.01157 32.254 By MS/MS 1 1.6779 1.9386 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6779 1.9386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1906300 710020 1196300 0 0 0 0 0 0 1906300 710020 1196300 0 0 0 0 0 0 0 0 0 6812 2383 7079 34401 34561 34561 1 EKEHYQVLE QLQQLLQAVNQQLTKEKEHYQVLE______ NQQLTKEKEHYQVLE_______________ K E K L E - 0 0 0 0 0 1 3 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 9 1 1173.5666 Q86UP2;G3V4Y7;B7Z6P3 Q86UP2 1349 1357 KTN1 Kinectin yes no 2 0.0091088 87.323 By MS/MS 1 1.2524 1.0625 NaN 1 Median NaN NaN NaN 0 0 Median 1.2524 1.0625 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7345900 3172400 4173600 0 0 0 7345900 3172400 4173600 0 0 0 0 0 0 0 0 0 0 0 0 6813 3280 7080 34402 34562 34562 1 EKEIAETRFEVAQVESLR KSQEQILEILRFIRREKEIAETRFEVAQVE IAETRFEVAQVESLRYRQRVELLERELQEL R E K L R Y 2 2 0 0 0 1 5 0 0 1 1 1 0 1 0 1 1 0 0 2 0 0 18 2 2133.1066 P12270 P12270 1206 1223 TPR Nucleoprotein TPR yes yes 3 1.7523E-06 75.239 By matching By MS/MS 1 1 0.76248 0.83339 2.5754 2 Median 0.82319 0.81835 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70625 0.84871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19610000 11037000 8573300 6638600 3810800 2827800 0 0 0 12972000 7226100 5745400 0 0 0 0 0 0 0 0 0 6814 1978 7081 34403;34404 34563 34563 1 EKELGNDAYK PMEEDLPENKKQALKEKELGNDAYKKKDFD KQALKEKELGNDAYKKKDFDTALKHYDKAK K E K Y K K 1 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 10 1 1165.5615 P31948 P31948 228 237 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.045492 57.859 By MS/MS 1 1.0985 1.0293 NaN 1 Median NaN NaN NaN 0 0 Median 1.0985 1.0293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3040700 1615300 1425400 0 0 0 3040700 1615300 1425400 0 0 0 0 0 0 0 0 0 0 0 0 6815 2212 7082 34405 34564 34564 1 EKENIQTLLK SEVVQIRSEVSQVKREKENIQTLLKSKEQE SQVKREKENIQTLLKSKEQEVNELLQKFQQ R E K L K S 0 0 1 0 0 1 2 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1214.6871 Q9P0K7 Q9P0K7 834 843 RAI14 Ankycorbin yes yes 3 0.016177 27.864 By MS/MS 1 1.2074 1.1501 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2074 1.1501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1452000 628300 823670 0 0 0 0 0 0 0 0 0 1452000 628300 823670 0 0 0 0 0 0 6816 4204 7083 34406 34565;34566 34565 2 EKEPIAASTNR QQLFRDVEDEETWIREKEPIAASTNRGKDL TWIREKEPIAASTNRGKDLIGVQNLLKKHQ R E K N R G 2 1 1 0 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 11 1 1214.6255 A0A0D9SF54;Q13813 Q13813 802 812 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.06498 14.258 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.88462 0.88874 12.916 5 Median 0.9482 0.97704 NaN 1 0 Median 0.74919 0.73741 NaN 1 0 Median 0.74946 0.88874 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88462 0.99564 NaN 1 0 Median 0.89887 0.79847 NaN 1 0 Median 1937500 873550 1064000 104280 49396 54887 506420 207610 298800 652390 325580 326800 0 0 0 412820 175060 237760 261620 115900 145720 6817 264;2838 7084 34407;34408;34409;34410;34411 34567;34568 34568 2 EKEPIVGSTDYGKDEDSAEALLK QQYFADANEAESWMREKEPIVGSTDYGKDE TDYGKDEDSAEALLKKHEALMSDLSAYGSS R E K L K K 2 0 0 3 0 0 4 2 0 1 2 3 0 0 1 2 1 0 1 1 0 0 23 2 2493.2122 A0A0D9SF54;Q13813 Q13813 908 930 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 5.12E-20 92.95 By MS/MS By matching By MS/MS By matching By matching 1 3 2 2 1 0.91795 0.9627 17.647 9 Median 1.1279 1.2349 NaN 1 1 Median 0.99918 1.0408 28.396 3 0 Median 0.78728 0.91213 2.8332 2 0 Median 0.92295 0.93543 4.0636 2 0 Median 0.85341 0.999 NaN 1 0 Median NaN NaN NaN 0 0 Median 135350000 68468000 66886000 17997000 8379500 9617900 11170000 5008000 6162200 100190000 51907000 48285000 3052000 1481600 1570400 2941800 1691500 1250300 0 0 0 6818 264;2838 7085 34412;34413;34414;34415;34416;34417;34418;34419;34420 34569;34570;34571;34572;34573;34574;34575 34572 7 EKEQLMASDDFGR QRFNRDVDETISWIKEKEQLMASDDFGRDL IKEKEQLMASDDFGRDLASVQALLRKHEGL K E K G R D 1 1 0 2 0 1 2 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 13 1 1524.6879 A0A0D9SF54;Q13813 Q13813 273 285 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 2.4508E-05 147.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 4 1.0457 1.0836 17.945 12 Median 1.2936 1.3065 NaN 1 0 Median 1.2341 1.1338 26.535 3 0 Median 0.87167 1.0442 15.828 4 2 Median 1.1225 1.0836 16.902 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 144080000 71485000 72593000 4552300 1868300 2683900 50457000 22715000 27742000 78287000 41659000 36628000 10782000 5242700 5538800 0 0 0 0 0 0 6819 264;2838 7086 34421;34422;34423;34424;34425;34426;34427;34428;34429;34430;34431;34432 34576;34577;34578;34579;34580;34581;34582;34583;34584;34585;34586;34587;34588;34589 34582 14 EKESELGDRPLQVGER GGGVGHRTVYLFDRREKESELGDRPLQVGE KESELGDRPLQVGERSDYAGFRACVCQTLG R E K E R S 0 2 0 1 0 1 4 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 16 2 1840.9279 A6NHR9 A6NHR9 35 50 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 1.4108E-10 143.38 By MS/MS By MS/MS By matching 2 2 2 0.91439 1.0032 28.977 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77198 0.92769 15.429 2 0 Median 1.0545 1.0563 11.654 2 0 Median NaN NaN NaN 0 0 Median 0.99917 0.86647 58.474 2 0 Median 65802000 34350000 31452000 0 0 0 0 0 0 53579000 28313000 25266000 10037000 5033800 5002700 0 0 0 2186700 1003300 1183500 6820 518 7087 34433;34434;34435;34436;34437;34438 34590;34591;34592;34593;34594;34595;34596;34597 34593 8 EKFEEMIQQIK VTSVEDYKALQKYEKEKFEEMIQQIKETGA KYEKEKFEEMIQQIKETGANLAICQWGFDD K E K I K E 0 0 0 0 0 2 3 0 0 2 0 2 1 1 0 0 0 0 0 0 0 0 11 1 1421.7225 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 283 293 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 0.00065105 94.692 By MS/MS By matching By MS/MS By matching 3 3 2 2 1.2022 1.1266 12.677 10 Median 1.2055 1.1211 18.012 3 0 Plateau 1.1526 1.0758 4.6882 3 0 Median 1.2279 1.283 5.7574 2 0 Median 1.2391 1.1441 1.8736 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96005000 42516000 53488000 59637000 26924000 32713000 15579000 6710900 8868000 19025000 8126700 10899000 1763400 755080 1008300 0 0 0 0 0 0 6821 2364 7088;7089 34439;34440;34441;34442;34443;34444;34445;34446;34447;34448 34598;34599;34600;34601;34602;34603;34604;34605 34602 1081 8 EKGDYILIVK KHMGNRVYNVTYTVKEKGDYILIVKWGDES TYTVKEKGDYILIVKWGDESVPGSPFKVKV K E K V K W 0 0 0 1 0 0 1 1 0 2 1 2 0 0 0 0 0 0 1 1 0 0 10 1 1176.6754 Q14315 Q14315 2700 2709 FLNC Filamin-C yes yes 2 0.032234 60.828 By MS/MS 1 1.458 1.394 NaN 1 Median NaN NaN NaN 0 0 Median 1.458 1.394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19220000 6038700 13182000 0 0 0 19220000 6038700 13182000 0 0 0 0 0 0 0 0 0 0 0 0 6822 2871 7090 34449 34606 34606 1 EKGKFEDMAK FSKKCSERWKTMSAKEKGKFEDMAKADKAR TMSAKEKGKFEDMAKADKARYEREMKTYIP K E K A K A 1 0 0 1 0 0 2 1 0 0 0 3 1 1 0 0 0 0 0 0 0 0 10 2 1181.5751 P09429;Q5T7C4;B2RPK0;P23497 P09429 56 65 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 no no 2 0.053471 39.022 By matching By MS/MS 1 2 1.0244 0.95531 2.6146 3 Plateau 0.94856 0.99087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0167 0.94859 0.9986 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1653700 836640 817060 354220 171120 183090 0 0 0 0 0 0 1299500 665520 633970 0 0 0 0 0 0 6823 1915;2114 7091 34450;34451;34452 34607 34607 1 EKGNEILELK TELKTKTDELLALGREKGNEILELKCNLEN LALGREKGNEILELKCNLENKKEEVSRLEE R E K L K C 0 0 1 0 0 0 3 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1171.6449 P12270 P12270 214 223 TPR Nucleoprotein TPR yes yes 2 0.0017845 80.688 By matching By matching By MS/MS By matching 1 1 2 2 1.0164 1.1646 22.757 6 Median 0.7671 0.83141 NaN 1 0 Median 1.5033 1.4598 NaN 1 0 Median 1.0164 1.1646 8.2253 2 0 Median 1.0557 1.0304 28.05 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27200000 13413000 13787000 3362800 2073500 1289400 1764800 598390 1166400 19367000 9409800 9956900 2705700 1330800 1374800 0 0 0 0 0 0 6824 1978 7092 34453;34454;34455;34456;34457;34458 34608;34609 34609 2 EKGTWVQLK LKRVKENDQKKKEAKEKGTWVQLKRQPAPP KKKEAKEKGTWVQLKRQPAPPREAHFVRTN K E K L K R 0 0 0 0 0 1 1 1 0 0 1 2 0 0 0 0 1 1 0 1 0 0 9 1 1087.6026 P46778 P46778 121 129 RPL21 60S ribosomal protein L21 yes yes 2 0.024051 64.265 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 2 1.357 1.3007 11.876 7 Median 1.0695 1.0873 NaN 1 0 Median 1.0844 0.99171 NaN 1 1 Median 1.357 1.3554 NaN 1 0 Median 1.3941 1.2542 NaN 1 0 Median 1.2342 1.3139 NaN 1 0 Median 1.536 1.3142 1.4548 2 0 Median 25699000 12272000 13428000 11311000 5361300 5950100 3805800 1880000 1925900 3814300 1726600 2087600 1145200 475830 669370 4535500 2341000 2194500 1087100 486780 600270 6825 2344 7093 34459;34460;34461;34462;34463;34464;34465 34610;34611;34612 34610 3 EKGTWVQLKR LKRVKENDQKKKEAKEKGTWVQLKRQPAPP KKEAKEKGTWVQLKRQPAPPREAHFVRTNG K E K K R Q 0 1 0 0 0 1 1 1 0 0 1 2 0 0 0 0 1 1 0 1 0 0 10 2 1243.7037 P46778 P46778 121 130 RPL21 60S ribosomal protein L21 yes yes 3 0.00057027 62.823 By MS/MS By MS/MS By MS/MS 1 1 1 1.2909 1.0738 15.419 3 Median 1.2909 1.3745 NaN 1 0 Median 1.1941 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3018 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4607700 1938600 2669100 2004900 879280 1125700 2046100 817680 1228400 0 0 0 556630 241600 315020 0 0 0 0 0 0 6826 2344 7094 34466;34467;34468 34613;34614;34615;34616;34617 34615 5 EKIDLENTLEQEQEALVNR NDTISKQLTLEQLRREKIDLENTLEQEQEA LENTLEQEQEALVNRLWKRMDKLEAEKRIL R E K N R L 1 1 2 1 0 2 5 0 0 1 3 1 0 0 0 0 1 0 0 1 0 0 19 1 2270.139 Q16204 Q16204 198 216 CCDC6 Coiled-coil domain-containing protein 6 yes yes 3 1.2823E-07 61.815 By MS/MS By matching By matching 2 2 1 1.0095 0.92565 11.909 5 Median 0.95359 1.0073 20.378 2 0 Median 1.027 0.96595 10.104 2 0 Median NaN NaN NaN 0 0 Median 1.0095 0.92565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9467600 4571100 4896500 6828800 3184600 3644200 2523700 1318300 1205300 0 0 0 115140 68146 46997 0 0 0 0 0 0 6827 2980 7095 34469;34470;34471;34472;34473 34618;34619 34619 2 EKIETELR TEGAEKKQQMAREYREKIETELRDICNDVL QMAREYREKIETELRDICNDVLSLLEKFLI R E K L R D 0 1 0 0 0 0 3 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 1 1016.5502 P63104;E7EX29;E7ESK7;B0AZS6;E9PD24;E7EVZ2 P63104 84 91 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.011154 114.89 By MS/MS 1 1.0311 0.95623 NaN 1 Median NaN NaN NaN 0 0 Median 1.0311 0.95623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5863400 2709500 3153900 0 0 0 5863400 2709500 3153900 0 0 0 0 0 0 0 0 0 0 0 0 6828 2618 7096 34474 34620;34621 34621 2 EKIIAALFK ALNALAACNYLPQSREKIIAALFKALNSTN YLPQSREKIIAALFKALNSTNSELQEAGEA R E K F K A 2 0 0 0 0 0 1 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1031.6379 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1383 1391 TRRAP Transformation/transcription domain-associated protein yes no 2 0.019038 61.962 By MS/MS 1 1.049 1.191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.049 1.191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5361800 2863600 2498100 0 0 0 0 0 0 5361800 2863600 2498100 0 0 0 0 0 0 0 0 0 6829 991 7097 34475 34622 34622 1 EKIVAPISDSPKPPPQR HTCSLFPDHPLLQEREKIVAPISDSPKPPP IVAPISDSPKPPPQRVTLTLPVLNAARTVI R E K Q R V 1 1 0 1 0 1 1 0 0 2 0 2 0 0 5 2 0 0 0 1 0 0 17 2 1858.0312 O95336;M0R261 O95336 169 185 PGLS 6-phosphogluconolactonase yes no 3 1.004E-05 53.328 By MS/MS By MS/MS 1 1 0.50702 0.48716 34.935 2 Median 0.35738 0.38053 NaN 1 0 Median 0.71931 0.62367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4705400 3143900 1561600 3742200 2674200 1068000 963260 469690 493580 0 0 0 0 0 0 0 0 0 0 0 0 6830 1764 7098 34476;34477 34623;34624 34623 2 EKIYVLLR ADTQTYQPYNKDWIKEKIYVLLRRQAQQAG YNKDWIKEKIYVLLRRQAQQAGK_______ K E K L R R 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 8 1 1032.6332 P84090 P84090 89 96 ERH Enhancer of rudimentary homolog yes yes 2 0.037477 65.038 By matching By MS/MS By matching By matching 1 1 2 1 1.1112 1.1847 8.1283 5 Median 1.0714 1.0506 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1708 1.219 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0013 1.1572 11.797 2 0 Median 1.4795 1.1847 NaN 1 0 Median 13036000 5823100 7212700 2434100 1010100 1423900 0 0 0 4478600 2079700 2398900 0 0 0 4938900 2312200 2626700 1184200 420980 763240 6831 2666 7099 34478;34479;34480;34481;34482 34625 34625 1 EKKPGDLSDELR GDLYYEGKEFETRLKEKKPGDLSDELRISL RLKEKKPGDLSDELRISLGMPVGPNAHKVP K E K L R I 0 1 0 2 0 0 2 1 0 0 2 2 0 0 1 1 0 0 0 0 0 0 12 2 1385.7151 Q13435;E9PPJ0;H0YEX5 Q13435 603 614 SF3B2 Splicing factor 3B subunit 2 yes no 3 0.0053317 53.252 By MS/MS By MS/MS 1 1 1.0995 1.0893 NaN 1 Median NaN NaN NaN 0 0 Median 1.0995 1.0893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787600 847770 939850 0 0 0 1787600 847770 939850 0 0 0 0 0 0 0 0 0 0 0 0 6832 2817 7100 34483;34484 34626;34627 34626 1 EKLEAEMEAAR KQQREQVDRNIREAKEKLEAEMEAARHEHQ REAKEKLEAEMEAARHEHQLMLMRQDLMRR K E K A R H 3 1 0 0 0 0 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1275.6129 Q8WXF1 Q8WXF1 302 312 PSPC1 Paraspeckle component 1 yes yes 2;3 4.2409E-05 107.79 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 5 1.0404 1.042 28.223 12 Median 1.5995 1.6119 19.698 2 0 Median 1.6497 1.5454 18.386 2 1 Median 0.86747 0.94764 10.084 4 0 Median 1.0299 0.94436 16.655 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94204000 46231000 47972000 8263900 3048200 5215600 9576300 3723800 5852600 46199000 24705000 21494000 30165000 14755000 15410000 0 0 0 0 0 0 6833 3520 7101 34485;34486;34487;34488;34489;34490;34491;34492;34493;34494;34495;34496;34497 34628;34629;34630;34631;34632;34633;34634;34635;34636;34637;34638;34639;34640 34635 13 EKLEATINELV FKKGQKVGEFSGANKEKLEATINELV____ GANKEKLEATINELV_______________ K E K L V - 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 11 1 1257.6816 P10599 P10599 95 105 TXN Thioredoxin yes yes 2 1.0022E-05 161.92 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 2 0.81108 0.76097 58.548 8 Median 1.0927 0.99149 NaN 1 0 Median 0.66306 0.56451 94.222 2 0 Median 1.1608 1.0978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44371 0.47217 76.973 2 0 Median 0.66619 0.53493 40.365 2 0 Median 96823000 45490000 51333000 17753000 7813700 9939600 12764000 5338600 7425100 54408000 24366000 30043000 0 0 0 6329400 4982800 1346600 5568500 2989700 2578800 6834 1942 7102 34498;34499;34500;34501;34502;34503;34504;34505 34641;34642;34643 34643 3 EKLEAYQHLFYLLQTNPTYLAK NKQKGGLKALSKEKREKLEAYQHLFYLLQT HLFYLLQTNPTYLAKLIFQMPQNKSTKFMD R E K A K L 2 0 1 0 0 2 2 0 1 0 5 2 0 1 1 0 2 0 3 0 0 0 22 1 2682.4057 P46940;A0A0J9YXZ5;H0YLE8 P46940 967 988 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3;4 8.8575E-07 40.756 By MS/MS By MS/MS 2 6 0.91555 0.88552 9.3553 8 Median 0.87814 0.87767 6.5795 2 0 Median 0.93009 0.8926 10.669 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38131000 17864000 20267000 11427000 5673800 5753300 26704000 12190000 14514000 0 0 0 0 0 0 0 0 0 0 0 0 6835 2350 7103 34506;34507;34508;34509;34510;34511;34512;34513 34644;34645;34646;34647;34648;34649 34644 6 EKLEMEMEAAR KQQQDQVDRNIKEAREKLEMEMEAARHEHQ KEAREKLEMEMEAARHEHQVMLMRQDLMRR R E K A R H 2 1 0 0 0 0 4 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 11 1 1335.6163 Q15233;H7C367;C9JYS8 Q15233 294 304 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 5.0267E-14 182.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 16 18 10 10 1.2067 1.1492 15.509 59 Median 1.2518 1.2559 14.855 2 0 Median 1.2172 1.1107 7.6316 6 1 Median 0.99517 1.1281 22.451 15 0 Median 1.3227 1.2513 10.913 18 2 Median 1.025 1.0419 11.926 9 1 Median 1.2691 1.1324 14.033 9 0 Median 1218800000 561430000 657420000 20176000 8839000 11337000 35435000 15714000 19721000 574130000 283980000 290150000 420640000 174870000 245770000 121740000 58104000 63632000 46726000 19920000 26807000 6836 2935 7104;7105 34514;34515;34516;34517;34518;34519;34520;34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533;34534;34535;34536;34537;34538;34539;34540;34541;34542;34543;34544;34545;34546;34547;34548;34549;34550;34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571;34572;34573;34574;34575 34650;34651;34652;34653;34654;34655;34656;34657;34658;34659;34660;34661;34662;34663;34664;34665;34666;34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681;34682;34683;34684;34685;34686;34687;34688;34689;34690;34691;34692;34693;34694;34695;34696;34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716;34717;34718;34719;34720;34721;34722;34723;34724;34725;34726;34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738;34739;34740;34741;34742;34743;34744;34745;34746;34747 34700 1610;1611 97 EKLFNEHIEALTK DHRWESGSLLEREEKEKLFNEHIEALTKKK EKEKLFNEHIEALTKKKREHFRQLLDETSA K E K T K K 1 0 1 0 0 0 3 0 1 1 2 2 0 1 0 0 1 0 0 0 0 0 13 1 1570.8355 O14776;G3V220 O14776 943 955 TCERG1 Transcription elongation regulator 1 yes no 3 0.024022 23.008 By MS/MS By matching 1 1 0.94073 0.98633 4.8213 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82604 0.95327 NaN 1 0 Median 1.0713 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9993200 5500800 4492400 0 0 0 0 0 0 8781200 4917800 3863400 1212000 583020 628970 0 0 0 0 0 0 6837 1494 7106 34576;34577 34748 34748 1 EKLHGTVVEGR GFVTFENSADADRAREKLHGTVVEGRKIEV DRAREKLHGTVVEGRKIEVNNATARVMTNK R E K G R K 0 1 0 0 0 0 2 2 1 0 1 1 0 0 0 0 1 0 0 2 0 0 11 1 1223.6622 Q9NWB1;A0A087X2B1;A0A0G2JRA5;B0QYV1;F8VZY7;F8VR27;S4R469;J3KNW3;B7Z1U7;I3L1D4;A0A286YEU2;F8VZG9;O43251;B0QYY4;F8VRS4;S4R3K7;A0A0G2JRD1 Q9NWB1 174 184 RBFOX1;RBFOX2 RNA binding protein fox-1 homolog 1;RNA binding protein fox-1 homolog;RNA binding protein fox-1 homolog 2 yes no 3 0.034774 21.631 By matching By MS/MS By MS/MS 1 2 1 0.85739 0.90507 9.7314 4 Median NaN NaN NaN 0 0 Median 1.1171 1.0136 NaN 1 0 Median 0.85739 0.90507 6.0204 2 0 Median NaN NaN NaN 0 0 Median 0.78219 0.81127 NaN 1 0 Median NaN NaN NaN 0 0 Median 2211500 1218800 992750 0 0 0 205510 108180 97338 622170 329930 292240 0 0 0 1383800 780670 603170 0 0 0 6838 133 7107 34578;34579;34580;34581 34749;34750;34751 34751 3 EKLIAPVAEEEATVPNNK ______________________________ IAPVAEEEATVPNNKITVVGVGQVGMACAI K E K N K I 3 0 2 0 0 0 4 0 0 1 1 2 0 0 2 0 1 0 0 2 0 0 18 1 1951.0262 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 6 23 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 3 3.1633E-06 54.964 By MS/MS By MS/MS By matching 1 1 1 0.71227 0.69417 10.511 3 Median 0.71227 0.69393 NaN 1 0 Median 0.92446 0.83263 NaN 1 0 Median 0.66375 0.69417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20541000 11289000 9252600 7395100 4295400 3099700 6060500 3033400 3027100 7085800 3960000 3125800 0 0 0 0 0 0 0 0 0 6839 1880 7108 34582;34583;34584 34752;34753;34754 34754 3 EKLPGELEPVQATQNK QKELAEQLGLSTGEKEKLPGELEPVQATQN KLPGELEPVQATQNKTGKYVPPSLRDGASR K E K N K T 1 0 1 0 0 2 3 1 0 0 2 2 0 0 2 0 1 0 0 1 0 0 16 1 1779.9367 O75821;K7ER90;K7EL20;K7EP16 O75821 194 209 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 3 4.3524E-09 102.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.80347 0.74688 6.3447 5 Median 0.80347 0.74688 NaN 1 0 Median 0.83247 0.74948 2.8115 2 1 Median 0.77296 0.84231 NaN 1 0 Median 0.80086 0.71313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59759000 30943000 28816000 11326000 6090100 5236100 20573000 10826000 9747100 24658000 12288000 12370000 3202400 1739900 1462500 0 0 0 0 0 0 6840 1697 7109 34585;34586;34587;34588;34589 34755;34756;34757;34758;34759;34760;34761 34759 7 EKLQEEMLQR EVERDNLAEDIMRLREKLQEEMLQREEAEN IMRLREKLQEEMLQREEAENTLQSFRQDVD R E K Q R E 0 1 0 0 0 2 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 10 1 1302.6602 P08670;B0YJC4 P08670 187 196 VIM Vimentin yes no 2;3 0.00059338 131.06 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 4 1 5 0.94712 0.97912 44.562 19 Median 0.19631 0.1895 NaN 1 0 Median 1.4035 1.2953 13.302 4 0 Median 1.0014 1.0572 12.392 4 1 Median 0.9941 0.94262 14.366 4 0 Median 1.1225 1.1483 NaN 1 0 Median 0.85526 0.75759 7.6231 5 1 Median 119110000 56871000 62237000 2235200 1761800 473340 24760000 10781000 13979000 17720000 8435100 9285400 29575000 13756000 15819000 12582000 5886200 6695600 32235000 16250000 15984000 6841 1907 7110 34590;34591;34592;34593;34594;34595;34596;34597;34598;34599;34600;34601;34602;34603;34604;34605;34606;34607;34608 34762;34763;34764;34765;34766;34767;34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780 34764 19 EKLQEEMLQREEAENTLQSFR EVERDNLAEDIMRLREKLQEEMLQREEAEN MLQREEAENTLQSFRQDVDNASLARLDLER R E K F R Q 1 2 1 0 0 3 6 0 0 0 3 1 1 1 0 1 1 0 0 0 0 0 21 2 2607.2599 P08670;B0YJC4 P08670 187 207 VIM Vimentin yes no 3;4 3.7196E-18 107.45 By MS/MS By matching By MS/MS By matching 3 1 3 1 1.045 1.1843 20.072 8 Median 1.0214 1.1368 16.926 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5887 1.6925 NaN 1 0 Median 1.0558 1.2081 6.8405 3 0 Median 1.0342 0.89725 NaN 1 0 Median 86861000 41157000 45705000 30832000 15034000 15798000 0 0 0 0 0 0 1011000 407340 603630 54326000 25369000 28956000 692590 345870 346720 6842 1907 7111;7112 34609;34610;34611;34612;34613;34614;34615;34616 34781;34782;34783;34784;34785;34786;34787 34781 678 7 EKLSQGVTLVVDR LLFSANRWEQVPLIKEKLSQGVTLVVDRYA IKEKLSQGVTLVVDRYAFSGVAFTGAKENF K E K D R Y 0 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 1 1442.8093 P23919;H7BZ20 P23919 85 97 DTYMK Thymidylate kinase yes no 2;3 4.5444E-06 119.76 By MS/MS By MS/MS 3 1 1.1576 1.0834 8.9839 3 Median 1.1085 1.159 11.45 2 0 Median 1.1576 1.0834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21399000 9392900 12006000 19895000 8705200 11189000 1504500 687630 816890 0 0 0 0 0 0 0 0 0 0 0 0 6843 2120 7113 34617;34618;34619;34620 34788;34789;34790;34791;34792 34789 5 EKLTFLEEDDKDLYILWK VSLGNVLAVAYATQREKLTFLEEDDKDLYI TFLEEDDKDLYILWKGPSFDVQVGLHELLG R E K W K G 0 0 0 3 0 0 3 0 0 1 4 3 0 1 0 0 1 1 1 0 0 0 18 2 2297.1831 G3V1D3;G3V180;Q9NY33 G3V1D3 441 458 DPP3 Dipeptidyl peptidase 3 yes no 3 0.0082822 24.043 By MS/MS 1 0.96921 0.94564 NaN 1 Median NaN NaN NaN 0 0 Median 0.96921 0.94564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1882000 907980 974020 0 0 0 1882000 907980 974020 0 0 0 0 0 0 0 0 0 0 0 0 6844 1102 7114 34621 34793 34793 1 EKLTPEQLHSMR KRGEAPFAQRIDPTREKLTPEQLHSMRQAE PTREKLTPEQLHSMRQAELAQWQKVLPRRR R E K M R Q 0 1 0 0 0 1 2 0 1 0 2 1 1 0 1 1 1 0 0 0 0 0 12 1 1467.7504 Q9Y2R0;K7EPV0 Q9Y2R0 28 39 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes no 3 0.017047 40.577 By MS/MS 1 1.1543 1.1319 NaN 1 Median 1.1543 1.1319 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554400 665190 889190 1554400 665190 889190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6845 4388 7115 34622 34794 34794 1 EKLTVLSEER QALLAAGHYASDEVREKLTVLSEERAALLE SDEVREKLTVLSEERAALLELWELRRQQYE R E K E R A 0 1 0 0 0 0 3 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 1 1202.6507 A0A0D9SF54;Q13813 Q13813 440 449 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00021588 72.321 By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1.2994 1.2966 14.477 4 Median NaN NaN NaN 0 0 Median 1.3961 1.2983 NaN 1 0 Median 1.0801 1.2949 NaN 1 0 Median 1.4608 1.3853 24.186 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12934000 5738600 7195800 0 0 0 6665300 2533000 4132300 4805900 2578200 2227700 1463100 627340 835770 0 0 0 0 0 0 6846 264;2838 7116 34623;34624;34625;34626;34627 34795;34796;34797;34798 34796 4 EKLVDPQEMLR DAEEVARGQGTGKPREKLVDPQEMLRLLGH GKPREKLVDPQEMLRLLGH___________ R E K L R L 0 1 0 1 0 1 2 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 11 1 1356.7071 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 477 487 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 0.0015134 64.64 By MS/MS 1 1.6964 1.6291 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6964 1.6291 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2983600 1024200 1959400 0 0 0 0 0 0 0 0 0 2983600 1024200 1959400 0 0 0 0 0 0 6847 2102 7117 34628 34799 34799 1 EKNPDMVAGEK YTYEELLNRVFNIMREKNPDMVAGEKRKFV NIMREKNPDMVAGEKRKFVMKPPQVVRVGT R E K E K R 1 0 1 1 0 0 2 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 11 1 1216.5758 P20042 P20042 189 199 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 0.048452 18.136 By matching By MS/MS 1 1 0.88202 0.89952 7.0433 2 Median 0.87588 0.85582 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8882 0.94545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 706910 362340 344560 374070 183970 190100 0 0 0 332830 178370 154460 0 0 0 0 0 0 0 0 0 6848 2072 7118 34629;34630 34800 34800 1 EKPEEESLAAPTWLVHLQQVER VQMASQLRLFDPQLKEKPEEESLAAPTWLV LAAPTWLVHLQQVERQIKEGAGVWHQDGAL K E K E R Q 2 1 0 0 0 2 5 0 1 0 3 1 0 0 2 1 1 1 0 2 0 0 22 1 2588.3235 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1864 1885 SEC16A Protein transport protein Sec16A yes no 3 0.00026363 27.495 By MS/MS 1 0.73139 0.73826 NaN 1 Median 0.73139 0.73826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5054700 2911200 2143500 5054700 2911200 2143500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6849 1513 7119 34631 34801;34802 34802 2 EKPLEEPDAQGR TFEGRQRERFDVGPKEKPLEEPDAQGRASE GPKEKPLEEPDAQGRASEDRRRERERGRNW K E K G R A 1 1 0 1 0 1 3 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 1 1367.6681 Q9BTC0 Q9BTC0 2097 2108 DIDO1 Death-inducer obliterator 1 yes yes 3 0.00020065 65.241 By MS/MS By matching 1 1 0.62425 0.65805 9.326 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5164 0.61606 NaN 1 0 Median 0.75463 0.70291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3102200 2065200 1037100 0 0 0 0 0 0 2866900 1926700 940250 235300 138490 96812 0 0 0 0 0 0 6850 3824 7120 34632;34633 34803;34804;34805 34804 3 EKPLLIFEILQR FNQIVKILHDFYIEKEKPLLIFEILQRLSE IEKEKPLLIFEILQRLSELKRFDMAVMFMS K E K Q R L 0 1 0 0 0 1 2 0 0 2 3 1 0 1 1 0 0 0 0 0 0 0 12 1 1497.8919 Q9H6T3 Q9H6T3 606 617 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 0.07255 34.887 By MS/MS By matching 2 1 1.267 1.1784 28.476 3 Median NaN NaN NaN 0 0 Median 1.0253 0.98766 24.97 2 0 Median 1.3616 1.4543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3960000 2105700 1854300 0 0 0 3718800 2008800 1710000 241170 96883 144290 0 0 0 0 0 0 0 0 0 6851 3978 7121 34634;34635;34636 34806 34806 1 EKPPITVVGDVGGR AAIHPSLEIPMLIPKEKPPITVVGDVGGRI KEKPPITVVGDVGGRIAIIVDDIIDDVDSF K E K G R I 0 1 0 1 0 0 1 3 0 1 0 1 0 0 2 0 1 0 0 3 0 0 14 1 1422.7831 O60256;E7EPA1;I3L0S1;I3L4G9;B4DP31;Q14558;C9J168 O60256 250 263 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 no no 2;3 9.0568E-12 126.09 By MS/MS By MS/MS 2 1 1.2115 1.1844 3.2729 3 Plateau 1.1255 1.206 2.5646 2 1 Median 1.2115 1.1505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75259000 37626000 37633000 34817000 17926000 16891000 40442000 19700000 20742000 0 0 0 0 0 0 0 0 0 0 0 0 6852 1607;600 7122 34637;34638;34639 34807;34808;34809;34810;34811 34809 5 EKPQANVPSALPSLPAGSGLK ATSKEAKSFFKQNEKEKPQANVPSALPSLP VPSALPSLPAGSGLKRSSGMSSLLGKIGAK K E K L K R 3 0 1 0 0 1 1 2 0 0 3 2 0 0 4 3 0 0 0 1 0 0 21 1 2060.1266 Q9UEE9 Q9UEE9 199 219 CFDP1 Craniofacial development protein 1 yes yes 3 0.0058494 23.892 By MS/MS By matching 1 1 0.41361 0.38109 3.9356 2 Median 0.42015 0.39184 NaN 1 0 Median 0.40717 0.37063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6194200 3869800 2324300 5651000 3547600 2103400 543170 322230 220940 0 0 0 0 0 0 0 0 0 0 0 0 6853 4255 7123 34640;34641 34812 34812 1 EKPQTLPSAVKGDEK STVSFGASTRAYTLREKPQTLPSAVKGDEK EKPQTLPSAVKGDEKMGGEDDELKGLLGLP R E K E K M 1 0 0 1 0 1 2 1 0 0 1 3 0 0 2 1 1 0 0 1 0 0 15 2 1625.8625 Q12972 Q12972 128 142 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 3 0.0072363 26.148 By MS/MS By matching 2 1 0.66062 0.70714 5.1671 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63108 0.7183 2.2141 2 0 Median 0.7007 0.65957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2901300 1543200 1358100 0 0 0 0 0 0 2155700 1146000 1009700 745590 397250 348330 0 0 0 0 0 0 6854 2775 7124 34642;34643;34644 34813 34813 1 EKPSEDMESNTFFDPR NIRAVKREQFKQQLKEKPSEDMESNTFFDP KPSEDMESNTFFDPRVSIAPSQRQRRTFKF K E K P R V 0 1 1 2 0 0 3 0 0 0 0 1 1 2 2 2 1 0 0 0 0 0 16 1 1927.8258 O43395 O43395 299 314 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 3 0.06634 10.196 By MS/MS By matching 2 1 0.58179 0.66064 11.25 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57144 0.62734 7.3146 2 0 Median 0.77183 0.74585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10723000 6902100 3820700 0 0 0 0 0 0 10359000 6703100 3656300 363380 198990 164390 0 0 0 0 0 0 6855 1569 7125 34645;34646;34647 34814 34814 1 EKPSFELSGALLEDTNTFR PRPGGNNKEKEVPAKEKPSFELSGALLEDT FELSGALLEDTNTFRGVVIKYSEPPEARIP K E K F R G 1 1 1 1 0 0 3 1 0 0 3 1 0 2 1 2 2 0 0 0 0 0 19 1 2153.0641 Q8TAD8 Q8TAD8 222 240 SNIP1 Smad nuclear-interacting protein 1 yes yes 3 0.00066402 31.462 By MS/MS By matching 1 1 0.82321 0.81717 30.509 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0014 1.0139 NaN 1 0 Median 0.67673 0.6586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5576500 3312900 2263600 0 0 0 0 0 0 5333400 3174100 2159200 243100 138740 104360 0 0 0 0 0 0 6856 3451 7126 34648;34649 34815 34815 1 EKPSYDTETDPSEGLMNVLK RWDYLTQVEKECKEKEKPSYDTETDPSEGL DTETDPSEGLMNVLKKIYEDGDDDMKRTIN K E K L K K 0 0 1 2 0 0 3 1 0 0 2 2 1 0 2 2 2 0 1 1 0 0 20 1 2252.0518 Q9HB71 Q9HB71 177 196 CACYBP Calcyclin-binding protein yes yes 3 0.041051 12.303 By MS/MS By MS/MS By matching 1 1 1 0.86412 0.84742 9.9109 3 Plateau NaN NaN NaN 0 0 Median 0.84822 0.77582 NaN 1 0 Median 0.86412 0.86259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81531 0.7076 NaN 1 0 Median 10151000 5331800 4819000 0 0 0 3506300 1815400 1690900 4796400 2471600 2324700 0 0 0 0 0 0 1848100 1044800 803370 6857 4016 7127 34650;34651;34652 34816;34817 34816 2 EKPTDMQNFGLR TSASQQMLNFPDKGKEKPTDMQNFGLRTDM KGKEKPTDMQNFGLRTDMYTKKNVPSKSKA K E K L R T 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 1 0 0 0 0 0 12 1 1434.6925 Q8TAQ2;F8VXC8 Q8TAQ2 567 578 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 8.9584E-06 122.7 By matching By MS/MS By MS/MS By MS/MS By matching 1 5 3 2 2 0.86186 0.91491 20.04 13 Median NaN NaN NaN 0 0 Median 0.93521 0.89645 NaN 1 0 Median 0.72192 0.8194 18.487 5 0 Median 1.1495 1.1097 8.3072 3 0 Median 0.7808 0.88571 7.5313 2 1 Median 1.1595 1.0221 5.6838 2 0 Median 105760000 59058000 46703000 0 0 0 752880 410710 342170 71584000 42019000 29565000 12734000 5486500 7247300 18831000 10353000 8478600 1859100 789310 1069800 6858 3455 7128;7129 34653;34654;34655;34656;34657;34658;34659;34660;34661;34662;34663;34664;34665 34818;34819;34820;34821;34822;34823;34824;34825;34826;34827;34828;34829 34821 1731 12 EKPTTALLDK LLKGDLDLELVLLCKEKPTTALLDKVADNL VLLCKEKPTTALLDKVADNLAIQLAAVTED K E K D K V 1 0 0 1 0 0 1 0 0 0 2 2 0 0 1 0 2 0 0 0 0 0 10 1 1114.6234 Q12906;K7EKJ9;K7ER69;K7EKY0 Q12906 118 127 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.010342 61.161 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 4 5 0.86835 0.87367 23.713 16 Median 0.98056 1.0122 NaN 1 0 Median 1.0671 1.0339 NaN 1 0 Median 0.81466 0.93006 42.639 3 0 Plateau 0.93858 0.90541 14.361 2 0 Median 0.71617 0.76549 24.459 4 0 Median 0.95089 0.84268 13.962 5 0 Median 108810000 56091000 52719000 3418800 1779700 1639000 16762000 8034700 8727000 16596000 9544200 7051400 9559300 4698900 4860400 40422000 21115000 19307000 22053000 10919000 11134000 6859 2769 7130 34666;34667;34668;34669;34670;34671;34672;34673;34674;34675;34676;34677;34678;34679;34680;34681 34830;34831;34832;34833;34834;34835;34836;34837;34838;34839;34840 34834 11 EKPVDLQNFGLR VPAAQQMLNFPEKNKEKPVDLQNFGLRTDI KNKEKPVDLQNFGLRTDIYSKKTLAKSKGA K E K L R T 0 1 1 1 0 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 0 0 12 1 1414.7569 Q92922 Q92922 591 602 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2;3 1.6056E-05 108.67 By MS/MS By MS/MS By matching By matching 3 4 2 1 0.9852 1.0457 37.656 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0046 1.1389 11.625 3 0 Median 0.92539 0.89122 9.4906 4 2 Median 0.6638 0.72262 95.18 2 0 Median 1.1695 1.0339 NaN 1 0 Median 60977000 29390000 31587000 0 0 0 0 0 0 46852000 22359000 24494000 10657000 5140200 5516900 3187500 1735700 1451700 279960 155100 124860 6860 3567 7131 34682;34683;34684;34685;34686;34687;34688;34689;34690;34691 34841;34842;34843;34844;34845;34846;34847;34848 34844 8 EKPYFPIPEEYTFIQNVPLEDR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ PEEYTFIQNVPLEDRVRGPKGPEEKKDCEV K E K D R V 0 1 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 1 0 0 22 1 2723.3483 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 463 484 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 1.0194E-12 77.959 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 6 3 3 6 0.50891 0.55167 41.069 23 Median 0.46277 0.5122 3.483 3 0 Plateau 0.48479 0.45349 53.124 2 0 Median 0.49224 0.54282 14.701 6 0 Median 0.74476 0.68287 6.8629 3 0 Median 0.48713 0.53583 100.72 3 0 Median 0.66667 0.5732 11.696 6 0 Median 325050000 255340000 69705000 37851000 24505000 13347000 1079800 640310 439460 31475000 20554000 10922000 6816600 3783300 3033300 237590000 200030000 37559000 10234000 5829300 4404900 6861 2680 7132 34692;34693;34694;34695;34696;34697;34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714 34849;34850;34851;34852;34853;34854;34855;34856;34857;34858;34859;34860;34861;34862;34863;34864;34865;34866;34867;34868;34869 34851 21 EKPYFPIPEEYTFIQNVPLEDRVR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ EYTFIQNVPLEDRVRGPKGPEEKKDCEVVM K E K V R G 0 2 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 2 0 0 24 2 2978.5178 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 463 486 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 4 6.6129E-05 31.621 By matching By MS/MS 1 2 0.46613 0.58486 7.91 3 Plateau 0.46613 0.50205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47794 0.55295 7.9363 2 0 Median NaN NaN NaN 0 0 Median 15342000 9637900 5704600 1285100 746920 538200 0 0 0 0 0 0 0 0 0 14057000 8891000 5166400 0 0 0 6862 2680 7133 34715;34716;34717 34870;34871;34872 34870 3 EKQAQLAQTLQQQEQASQGLR QQQDQELAGLKQQAKEKQAQLAQTLQQQEQ AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K E K L R H 3 1 0 0 0 8 2 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 21 1 2382.2251 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 530 550 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 7.1072E-47 201.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 1 0.9136 1.0278 19.62 9 Median NaN NaN NaN 0 0 Median 1.6465 1.5694 NaN 1 0 Median 0.9136 1.0933 NaN 1 0 Median 1.0663 1.0294 0.22132 2 2 Median 0.82872 0.92522 12.36 4 2 Median 1.2845 1.141 NaN 1 0 Median 294520000 148880000 145640000 0 0 0 2089400 800930 1288500 185620000 91356000 94265000 8063000 3799700 4263300 95795000 51686000 44109000 2953300 1237700 1715500 6863 2905;77 7134 34718;34719;34720;34721;34722;34723;34724;34725;34726 34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886 34874 14 EKQDEQVGLPGK DLATFIEELEAVEAKEKQDEQVGLPGKGGK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K E K G K G 0 0 0 1 0 2 2 2 0 0 1 2 0 0 1 0 0 0 0 1 0 0 12 1 1326.6779 P11388 P11388 1185 1196 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0048173 35.006 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.2929 1.1714 51.802 5 Median 0.63205 0.60955 NaN 1 0 Median 2.7329 2.5701 NaN 1 0 Median 1.2929 1.4847 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0913 1.1714 NaN 1 0 Median 1.3092 1.1683 NaN 1 0 Median 10736000 4189800 6546300 115660 63753 51907 1195300 270300 924990 2428500 975550 1452900 0 0 0 5685900 2478900 3207000 1310800 401360 909440 6864 1963 7135 34727;34728;34729;34730;34731 34887;34888;34889 34889 3 EKQPMVPESLADYITAAYVEMR PLDMKLMRRYIAMCREKQPMVPESLADYIT ESLADYITAAYVEMRREAWASKDATYTSAR R E K M R R 3 1 0 1 0 1 3 0 0 1 1 1 2 0 2 1 1 0 2 2 0 0 22 1 2540.2291 P33993 P33993 568 589 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.070754 7.2761 By matching By MS/MS 1 1 0.7156 0.72486 24.647 2 Median 0.5951 0.60892 NaN 1 0 Median 0.8605 0.86286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3555300 1907200 1648100 2356700 1356800 999930 1198600 550420 648190 0 0 0 0 0 0 0 0 0 0 0 0 6865 2225 7136 34732;34733 34890 34890 1 EKQPPIDNIIR NQLQATQAARKLLSREKQPPIDNIIRAGLI LLSREKQPPIDNIIRAGLIPKFVSFLGRTD R E K I R A 0 1 1 1 0 1 1 0 0 3 0 1 0 0 2 0 0 0 0 0 0 0 11 1 1321.7354 P52292;J3QLL0;J3KS65 P52292 107 117 KPNA2 Importin subunit alpha-1 yes no 2;3 3.6535E-05 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 2 4 0.84006 0.81189 21.686 18 Median 0.81814 0.82145 1.2653 3 0 Plateau 0.75953 0.69371 14.965 3 0 Median 0.91168 1.025 33.555 3 0 Median 0.91075 0.85463 7.6275 3 0 Plateau 1.0477 1.0733 7.873 2 0 Median 0.82103 0.73925 32.987 4 0 Median 113670000 57807000 55858000 14826000 8286000 6540500 9326400 5113300 4213100 27919000 13777000 14142000 25881000 13404000 12477000 20484000 9100900 11383000 15229000 8126300 7102300 6866 2448 7137 34734;34735;34736;34737;34738;34739;34740;34741;34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752 34891;34892;34893;34894;34895;34896;34897;34898;34899;34900;34901;34902;34903;34904;34905;34906;34907;34908;34909;34910;34911;34912 34896 22 EKQPVAGSEGAQYR QNQALARQYMQMLPKEKQPVAGSEGAQYRK KEKQPVAGSEGAQYRKKQLAKQLPAHDQDP K E K Y R K 2 1 0 0 0 2 2 2 0 0 0 1 0 0 1 1 0 0 1 1 0 0 14 1 1518.7427 Q9UGI8;F8W7T0 Q9UGI8 133 146 TES Testin yes no 3 0.00016898 67.964 By matching By MS/MS By matching By matching 2 2 1 1 0.85818 0.85178 73.846 6 Median 0.47189 0.47999 148.88 2 0 Median 0.94873 0.87633 22.047 2 0 Median 0.83367 0.84572 NaN 1 0 Median 0.88341 0.85788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3268600 1865900 1402700 525080 396140 128930 1913400 1020700 892700 468270 260750 207510 361920 188360 173560 0 0 0 0 0 0 6867 4263 7138 34753;34754;34755;34756;34757;34758 34913;34914 34914 2 EKQSDDEVYAPGLDIESSLK LLDPRWLEQRDRSIREKQSDDEVYAPGLDI DEVYAPGLDIESSLKQLAERRTDIFGVEET R E K L K Q 1 0 0 3 0 1 3 1 0 1 2 2 0 0 1 3 0 0 1 1 0 0 20 1 2222.059 Q15459 Q15459 448 467 SF3A1 Splicing factor 3A subunit 1 yes yes 3 4.3183E-09 81.003 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0124 1.0662 16.963 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0275 1.171 25.64 2 0 Median 1.2638 1.2039 NaN 1 0 Median 0.95268 1.0662 NaN 1 0 Median 1.0124 0.91878 NaN 1 0 Median 33160000 15834000 17326000 0 0 0 0 0 0 13817000 7039600 6777800 1472000 630070 841950 17419000 7937300 9481500 451910 226830 225080 6868 2954 7139 34759;34760;34761;34762;34763 34915;34916;34917;34918;34919 34918 5 EKTEAEPTHVNEEKLEHETAVTVSEEVSK PPSPVEREMVVQVEREKTEAEPTHVNEEKL LEHETAVTVSEEVSKQLLQTVNVPIIDGAK R E K S K Q 2 0 1 0 0 0 9 0 2 0 1 3 0 0 1 2 4 0 0 4 0 0 29 2 3278.579 Q02952 Q02952 1344 1372 AKAP12 A-kinase anchor protein 12 yes yes 4 0.0097149 19.692 By MS/MS 1 1.139 1.3454 NaN 1 Median 1.139 1.3454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18013000 6159700 11853000 18013000 6159700 11853000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6869 2705 7140 34764 34920 34920 1 EKTHINIVVIGHVDSGK ______________________________ THINIVVIGHVDSGKSTTTGHLIYKCGGID K E K G K S 0 0 1 1 0 0 1 2 2 3 0 2 0 0 0 1 1 0 0 3 0 0 17 1 1845.0108 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 4 20 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 4 6.7695E-06 74.993 By MS/MS By MS/MS 1 1 1.2774 1.2751 9.9179 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3038 1.3677 NaN 1 0 Median 1.2515 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27835000 13427000 14408000 0 0 0 0 0 0 5587000 2398700 3188300 22248000 11028000 11220000 0 0 0 0 0 0 6870 2632;404 7141 34765;34766 34921;34922;34923 34922 3 EKTHVADFAPEVAWVTR NCYFPMFVSQSALEKEKTHVADFAPEVAWV THVADFAPEVAWVTRSGKTELAEPIAIRPT K E K T R S 3 1 0 1 0 0 2 0 1 0 0 1 0 1 1 0 2 1 0 3 0 0 17 1 1954.9901 P07814 P07814 1090 1106 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 0.018583 20.091 By MS/MS By matching 1 1 0.66003 0.68764 51.838 2 Median 0.98547 0.99209 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44206 0.47661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10031000 5589800 4441500 7951600 4137500 3814100 0 0 0 2079700 1452300 627420 0 0 0 0 0 0 0 0 0 6871 1892 7142 34767;34768 34924 34924 1 EKVAGIESHSELQISR KEECEKARQELQEAKEKVAGIESHSELQIS KVAGIESHSELQISRQQNELAELHANLARA K E K S R Q 1 1 0 0 0 1 3 1 1 2 1 1 0 0 0 3 0 0 0 1 0 0 16 1 1781.9272 A0A087WY61;Q14980 Q14980 854 869 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 1.4562E-06 71.697 By MS/MS By matching 2 1 2.1372 2.5608 38.722 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5889 1.9044 41.885 2 1 Median NaN NaN NaN 0 0 Median 2.584 2.9335 NaN 1 0 Median NaN NaN NaN 0 0 Median 41587000 12245000 29342000 0 0 0 0 0 0 30515000 10707000 19809000 0 0 0 11072000 1538100 9533700 0 0 0 6872 2905;77 7143 34769;34770;34771 34925;34926 34926 2 EKVDLVLLGK GPLQVARVLAKLAEKEKVDLVLLGKQAIDD KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K E K G K Q 0 0 0 1 0 0 1 1 0 0 3 2 0 0 0 0 0 0 0 2 0 0 10 1 1112.6805 P38117 P38117 115 124 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.0016643 91.087 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.3484 1.2698 34.032 6 Median 1.0364 1.0288 4.7392 2 0 Median 1.6596 1.5156 NaN 1 0 Median 0.9636 0.96041 NaN 1 0 Median 1.7898 1.6097 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6149 2.2694 NaN 1 0 Median 52873000 25129000 27743000 35091000 17822000 17269000 7702900 2814900 4888000 8590700 3957900 4632800 838080 314400 523680 0 0 0 649800 220010 429800 6873 2272 7144 34772;34773;34774;34775;34776;34777 34927;34928;34929;34930;34931;34932 34927 6 EKVEELIK DFNYILNMSLWSLTKEKVEELIKQRDAKGR SLWSLTKEKVEELIKQRDAKGREVNDLKRK K E K I K Q 0 0 0 0 0 0 3 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 8 1 986.56481 Q02880 Q02880 1157 1164 TOP2B DNA topoisomerase 2-beta yes yes 2 0.016667 91.069 By MS/MS By MS/MS 1 1 0.91 1.0126 12.475 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80177 0.92712 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0329 1.106 NaN 1 0 Median NaN NaN NaN 0 0 Median 12675000 6593600 6081000 0 0 0 0 0 0 8379500 4473100 3906400 0 0 0 4295100 2120400 2174600 0 0 0 6874 2704 7145 34778;34779 34933;34934;34935 34935 3 EKVEPEVLSTDTQTSPEPGTR GVSLMGVQMPNLDLKEKVEPEVLSTDTQTS VLSTDTQTSPEPGTRMNILPKRTRRVKTQS K E K T R M 0 1 0 1 0 1 4 1 0 0 1 1 0 0 3 2 4 0 0 2 0 0 21 1 2299.1179 P29375 P29375 190 210 KDM5A Lysine-specific demethylase 5A yes yes 3 4.908E-18 106.49 By MS/MS By matching 1 1 0.59487 0.63998 6.4767 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50991 0.61133 NaN 1 0 Median 0.69399 0.66997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9921300 5942900 3978400 0 0 0 0 0 0 8661600 5216200 3445400 1259700 726750 532950 0 0 0 0 0 0 6875 2172 7146 34780;34781 34936 34936 1 EKVESELR TDTSDKKLQLIKDYREKVESELRSICTTVL QLIKDYREKVESELRSICTTVLELLDKYLI R E K L R S 0 1 0 0 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 8 1 988.51892 P27348;E9PG15 P27348 84 91 YWHAQ 14-3-3 protein theta yes no 2 0.023287 78.77 By MS/MS By MS/MS By matching 1 1 1 1.1737 1.1908 9.9821 3 Median 1.1337 1.1908 NaN 1 0 Median 1.1737 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5114 1.3379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6062000 2785200 3276800 4002300 1880600 2121800 1867900 823220 1044700 0 0 0 191770 81446 110330 0 0 0 0 0 0 6876 2152 7147 34782;34783;34784 34937;34938;34939;34940 34940 4 EKVFDVIIR PKGTRDYSPRQMAVREKVFDVIIRCFKRHG RQMAVREKVFDVIIRCFKRHGAEVIDTPVF R E K I R C 0 1 0 1 0 0 1 0 0 2 0 1 0 1 0 0 0 0 0 2 0 0 9 1 1117.6495 P12081;B3KWE1;B4DDD8;E7ETE2 P12081 74 82 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.014287 67.993 By matching By matching By MS/MS By matching 1 1 2 1 1.1765 1.0983 10.832 5 Median 1.0796 1.0763 NaN 1 0 Median 1.2015 1.0983 NaN 1 0 Median 1.1983 1.2751 9.6087 2 0 Median 1.1096 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21504000 9466500 12037000 10668000 4847800 5820100 1154100 488940 665160 6655900 2689500 3966400 3025800 1440400 1585500 0 0 0 0 0 0 6877 1975 7148 34785;34786;34787;34788;34789 34941 34941 1 EKVGEQAQVVIIDMNDPSNPIR FSTLTMESDKFICIREKVGEQAQVVIIDMN QVVIIDMNDPSNPIRRPISADSAIMNPASK R E K I R R 1 1 2 2 0 2 2 1 0 3 0 1 1 0 2 1 0 0 0 3 0 0 22 1 2451.2428 A0A087WVQ6;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 42 63 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 2.0977E-23 113.51 By MS/MS 1 0.93073 0.93647 NaN 1 Median 0.93073 0.93647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8741900 5056900 3685100 8741900 5056900 3685100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6878 44 7149 34790 34942 34942 1 EKVGEVTYVELLMDAEGK IPFDVKWQSLKDLVKEKVGEVTYVELLMDA GEVTYVELLMDAEGKSRVSVVVEFKMEESM K E K G K S 1 0 0 1 0 0 4 2 0 0 2 2 1 0 0 0 1 0 1 3 0 0 18 1 2009.0027 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3 A0A087X0X3 93 110 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 4.4587E-08 87.16 By matching By MS/MS By matching 1 1 1 0.39037 0.39999 111.69 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78715 0.88111 NaN 1 0 Median 0.19359 0.18158 NaN 1 0 Median 15187000 8249200 6937700 971890 776400 195490 0 0 0 0 0 0 0 0 0 14065000 7379100 6686000 149870 93617 56253 6879 116 7150 34791;34792;34793 34943;34944 34944 2 EKVHEYNVLLETLSR GEELDKLWREFLHHKEKVHEYNVLLETLSR EKVHEYNVLLETLSRTEEIHENVISPSDLS K E K S R T 0 1 1 0 0 0 3 0 1 0 3 1 0 0 0 1 1 0 1 2 0 0 15 1 1828.9683 P30533;A0A3B3IRQ7 P30533 181 195 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 3 0.00010441 66.285 By MS/MS By matching 1 1 1.2684 1.2705 6.6445 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1723 1.3316 NaN 1 0 Median 1.3724 1.2121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4651500 1913500 2738000 0 0 0 0 0 0 4247400 1778300 2469100 404060 135220 268850 0 0 0 0 0 0 6880 2196 7151 34794;34795 34945;34946 34945 2 EKVLATVTKPVGGDK RKYSAAKSKVEKKKKEKVLATVTKPVGGDK EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K E K D K N 1 0 0 1 0 0 1 2 0 0 1 3 0 0 1 0 2 0 0 3 0 0 15 2 1540.8825 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 86 100 RPL6 60S ribosomal protein L6 yes no 3 0.0041173 28.089 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.95791 0.93994 6.94 5 Median 0.95791 0.98225 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81971 0.84605 NaN 1 0 Median 0.99855 0.93994 NaN 1 0 Median 0.7932 0.86786 NaN 1 0 Median 1.1429 0.98091 NaN 1 0 Median 10913000 5237800 5675500 4556600 2037700 2518900 0 0 0 720060 380850 339200 824370 398470 425900 4218800 2172800 2045900 593470 247960 345520 6881 2703 7152 34796;34797;34798;34799;34800 34947;34948;34949 34947 3 EKVPGGLQGSQDR EGSRDRGLVRPGSSREKVPGGLQGSQDRGA SREKVPGGLQGSQDRGAAGSRERGPPRRAG R E K D R G 0 1 0 1 0 2 1 3 0 0 1 1 0 0 1 1 0 0 0 1 0 0 13 1 1369.695 P49750;H0YIQ2 P49750 1091 1103 YLPM1 YLP motif-containing protein 1 yes no 3 0.0054842 32.439 By MS/MS By MS/MS By MS/MS 1 1 1 0.91083 0.84522 20.084 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71208 0.84522 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91083 1.0345 NaN 1 0 Median 0.77932 0.69227 NaN 1 0 Median 3963500 1823600 2139900 0 0 0 0 0 0 904180 517250 386940 0 0 0 2102200 881510 1220700 957110 424890 532220 6882 2395 7153 34801;34802;34803 34950;34951;34952;34953 34951 4 EKYEITEQR RKPRHQEGEIFDTEKEKYEITEQRKIDQKA IFDTEKEKYEITEQRKIDQKAVDSQILPKI K E K Q R K 0 1 0 0 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1194.5881 Q02878 Q02878 238 246 RPL6 60S ribosomal protein L6 yes yes 3 0.055436 26.514 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 307190 0 307190 0 0 0 0 0 0 307190 0 307190 0 0 0 0 0 0 0 0 0 6883 2703 7154 34804 34954 34954 1 EKYEKDIAAYR ADDKQPYEKKAAKLKEKYEKDIAAYRAKGK AKLKEKYEKDIAAYRAKGKPDAAKKGVVKA K E K Y R A 2 1 0 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 2 0 0 0 11 2 1384.6987 P09429;P26583 P09429 153 163 HMGB1;HMGB2 High mobility group protein B1;High mobility group protein B2 no no 3 0.00010405 72.152 By matching By matching By MS/MS 1 1 1 1.2562 1.0728 8.0994 3 Median NaN NaN NaN 0 0 Median 1.4163 1.2091 NaN 1 0 Median 1.1389 1.0728 NaN 1 0 Median 1.2562 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13102000 5665400 7437000 0 0 0 769690 360460 409230 2001600 877490 1124100 10331000 4427400 5903700 0 0 0 0 0 0 6884 1915;2146 7155 34805;34806;34807 34955;34956 34956 2 EKYGIVDYMIEQSGPPSK KIFRKGRPYDYNGPREKYGIVDYMIEQSGP GIVDYMIEQSGPPSKEILTLKQVQEFLKDG R E K S K E 0 0 0 1 0 1 2 2 0 2 0 2 1 0 2 2 0 0 2 1 0 0 18 1 2039.9874 P13667;A0A499FI48 P13667 271 288 PDIA4 Protein disulfide-isomerase A4 yes no 3 3.5718E-09 79.311 By MS/MS 2 0.80963 0.83366 1.6796 2 Median 0.80963 0.83366 1.6796 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13375000 6948300 6426800 13375000 6948300 6426800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6885 1993 7156 34808;34809 34957;34958 34958 2 EKYIDQEELNK EEKKDGDKKKKKKIKEKYIDQEELNKTKPI KKIKEKYIDQEELNKTKPIWTRNPDDITNE K E K N K T 0 0 1 1 0 1 3 0 0 1 1 2 0 0 0 0 0 0 1 0 0 0 11 1 1407.6882 P07900;Q14568;P08238;Q58FF8 P07900 282 292 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2;3 5.0097E-05 133.23 By MS/MS By MS/MS By MS/MS 2 2 1 1.0831 1.1342 6.1306 5 Median 1.121 1.1504 4.7905 2 0 Median 1.115 1.0798 6.9422 2 0 Median 1.0452 1.1953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54981000 25380000 29601000 32876000 14889000 17987000 20657000 9759900 10897000 1448300 731640 716690 0 0 0 0 0 0 0 0 0 6886 1894;1899;3040 7157 34810;34811;34812;34813;34814 34959;34960;34961;34962;34963;34964;34965;34966 34966 8 EKYLTVQNTVR YIEVLLPLGSEPELREKYLTVQNTVRFGRI PELREKYLTVQNTVRFGRILEDLDSLGVLI R E K V R F 0 1 1 0 0 1 1 0 0 0 1 1 0 0 0 0 2 0 1 2 0 0 11 1 1349.7303 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 102 112 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 3 0.0099125 31.148 By matching By matching By MS/MS 1 1 1 1.0285 0.94021 12.61 3 Median NaN NaN NaN 0 0 Median 1.0285 0.94021 NaN 1 0 Median 0.90099 0.91178 NaN 1 0 Median 1.199 1.15 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7667500 3232300 4435200 0 0 0 1387200 656690 730520 1906800 834720 1072100 4373400 1740900 2632500 0 0 0 0 0 0 6887 4400 7158 34815;34816;34817 34967 34967 1 EKYPSHSFIGEESVAAGEK ATDQKVEKMLISSIKEKYPSHSFIGEESVA SHSFIGEESVAAGEKSILTDNPTWIIDPID K E K E K S 2 0 0 0 0 0 4 2 1 1 0 2 0 1 1 3 0 0 1 1 0 0 19 1 2063.98 P29218;E5RIP7;H0YBL1;E5RG94;E5RIF4;E5RHE9;E5RI82;E5RGY4 P29218 60 78 IMPA1 Inositol monophosphatase 1 yes no 4 0.018017 26.344 By MS/MS 1 1.7659 1.6174 NaN 1 Median NaN NaN NaN 0 0 Median 1.7659 1.6174 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1744700 773770 970980 0 0 0 1744700 773770 970980 0 0 0 0 0 0 0 0 0 0 0 0 6888 2169 7159 34818 34968 34968 1 EKYSLVEAK LRGAGSIAGASASPKEKYSLVEAKRKKLIS ASASPKEKYSLVEAKRKKLISPESTVMLLE K E K A K R 1 0 0 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 1 1 0 0 9 1 1065.5706 P15924 P15924 2027 2035 DSP Desmoplakin yes yes 2 0.018224 76.827 By MS/MS 1 1.035 0.92363 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.035 0.92363 NaN 1 1 Median 2378500 999870 1378600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2378500 999870 1378600 6889 2021 7160 34819 34969 34969 1 EKYVQELAAVR NLGRQFLEVELDQAREKYVQELAAVRADAE DQAREKYVQELAAVRADAETRLAEVQREAQ R E K V R A 2 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 1 1304.7089 A0A087WY61;K4DIE0;Q14980 Q14980 1474 1484 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.1764E-05 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 1.0193 1.0192 30.115 11 Median NaN NaN NaN 0 0 Median 2.1031 2.5053 58.97 3 1 Plateau 0.86062 1.031 1.6317 2 0 Median 1.1037 1.0655 20.035 2 0 Median 0.93796 1.0672 11.704 2 0 Median 1.1006 0.97768 5.1719 2 0 Median 111690000 53380000 58314000 0 0 0 8741300 3752300 4989000 56812000 26845000 29967000 5246200 2312300 2933900 37636000 18945000 18691000 3258100 1524600 1733500 6890 2905;77 7161 34820;34821;34822;34823;34824;34825;34826;34827;34828;34829;34830 34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983;34984;34985 34970 16 ELAAEDEQVFLMK DFIVKPPVRKLVHDKELAAEDEQVFLMKQQ DKELAAEDEQVFLMKQQSLLAKQPATPTRA K E L M K Q 2 0 0 1 0 1 3 0 0 0 2 1 1 1 0 0 0 0 0 1 0 0 13 0 1521.7385 O43237;J3KRI4;J3KSD2 O43237 353 365 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 2 0.025504 28.013 By MS/MS By matching 1 1 1.1336 1.0627 11.341 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96845 0.98083 NaN 1 0 Median 1.327 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4843800 2136600 2707200 0 0 0 0 0 0 4062000 1828400 2233600 781770 308190 473580 0 0 0 0 0 0 6891 1559 7162 34831;34832 34986 34986 1 ELAAQLALSQAQLEVHQGEVQR KGQQGVGPPTDNEARELAAQLALSQAQLEV LSQAQLEVHQGEVQRLQAQVVDLQAKMRAA R E L Q R L 4 1 0 0 0 5 3 1 1 0 4 0 0 0 0 1 0 0 0 2 0 0 22 0 2417.2663 Q9BQS8 Q9BQS8 766 787 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 3 5.274E-05 47.392 By MS/MS 1 0.93 0.89081 NaN 1 Median 0.93 0.89081 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4755300 2310300 2445000 4755300 2310300 2445000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6892 3791 7163 34833 34987 34987 1 ELAAQLNEEAK RNEMTAEEKRRAHQKELAAQLNEEAKRRLT AHQKELAAQLNEEAKRRLTEQKGEQQIQKA K E L A K R 3 0 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1214.6143 Q9Y5B9 Q9Y5B9 480 490 SUPT16H FACT complex subunit SPT16 yes yes 2 5.2546E-09 166.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 0.99962 0.83942 36.482 9 Median 0.84482 0.82882 1.7972 2 1 Median 2.0587 1.8572 22.324 2 0 Median 1.1625 1.2735 NaN 1 0 Median 1.269 1.0974 NaN 1 0 Median 0.77037 0.79421 NaN 1 0 Median 0.96581 0.80895 1.7028 2 0 Median 43836000 20684000 23152000 5481700 3585500 1896200 7597100 2114300 5482900 1942500 1005600 936820 5173100 2315200 2857900 8815200 4588900 4226300 14827000 7074500 7752000 6893 4456 7164 34834;34835;34836;34837;34838;34839;34840;34841;34842;34843 34988;34989;34990;34991;34992;34993;34994;34995;34996 34990 9 ELAAQLNEEAKR RNEMTAEEKRRAHQKELAAQLNEEAKRRLT HQKELAAQLNEEAKRRLTEQKGEQQIQKAR K E L K R R 3 1 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1370.7154 Q9Y5B9 Q9Y5B9 480 491 SUPT16H FACT complex subunit SPT16 yes yes 2;3 8.7372E-07 117.7 By MS/MS By MS/MS By MS/MS 2 4 4 1.3155 1.34 14.561 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5523 1.4917 4.9434 2 2 Median 1.2921 1.4421 10.374 4 1 Median 1.2977 1.1382 5.1564 4 0 Median 30127000 12710000 17417000 0 0 0 0 0 0 0 0 0 2589300 1071900 1517400 17827000 7400100 10427000 9710200 4238400 5471800 6894 4456 7165 34844;34845;34846;34847;34848;34849;34850;34851;34852;34853 34997;34998;34999;35000;35001;35002;35003;35004;35005;35006;35007;35008;35009;35010;35011 35009 15 ELADESQTLK MAATSFILMTTFPNKELADESQTLKEANLL TFPNKELADESQTLKEANLLNAVIVQRLT_ K E L L K E 1 0 0 1 0 1 2 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1132.5612 Q9UNZ2 Q9UNZ2 347 356 NSFL1C NSFL1 cofactor p47 yes yes 2 0.0034408 56.729 By MS/MS 1 1.3092 1.1218 NaN 1 Median NaN NaN NaN 0 0 Median 1.3092 1.1218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4478900 2043000 2435900 0 0 0 4478900 2043000 2435900 0 0 0 0 0 0 0 0 0 0 0 0 6895 4353 7166 34854 35012;35013 35012 2 ELADLPQNK EALKATLDVFFVPLKELADLPQNKSSQESI FFVPLKELADLPQNKSSQESIVCELRCKSV K E L N K S 1 0 1 1 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 0 1026.5346 Q9NXV6 Q9NXV6 487 495 CDKN2AIP CDKN2A-interacting protein yes yes 2 0.0094971 49.097 By MS/MS 1 0.93595 0.9958 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93595 0.9958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076600 1799400 1277200 0 0 0 0 0 0 3076600 1799400 1277200 0 0 0 0 0 0 0 0 0 6896 4169 7167 34855 35014 35014 1 ELAEAVAGGR ______________________________ RGLPRELAEAVAGGRVLVVGAGGIGCELLK R E L G R V 3 1 0 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 971.50361 Q9UBT2;K7EPL2;U3KQ55;K7ES38 Q9UBT2 10 19 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.00040344 113.5 By MS/MS By MS/MS 4 3 1.0017 0.95118 24.098 6 Median 0.93112 0.88083 31.048 3 0 Median 1.1292 0.97907 7.6957 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41071000 20225000 20846000 21105000 11085000 10020000 19966000 9139900 10826000 0 0 0 0 0 0 0 0 0 0 0 0 6897 4247 7168 34856;34857;34858;34859;34860;34861;34862 35015;35016;35017;35018;35019;35020;35021 35016 7 ELAEDDSILK AEEKKKQDELKRIARELAEDDSILK_____ KRIARELAEDDSILK_______________ R E L L K - 1 0 0 2 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1131.5659 P56385 P56385 60 69 ATP5I ATP synthase subunit e, mitochondrial yes yes 2 0.0014621 65.305 By MS/MS By MS/MS 1 1 1.1503 0.99331 6.7372 2 Median 1.1455 1.0418 NaN 1 0 Median 1.1552 0.9471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18664000 8617300 10046000 12339000 5815800 6523000 6324900 2801500 3523400 0 0 0 0 0 0 0 0 0 0 0 0 6898 2512 7169 34863;34864 35022;35023;35024;35025 35022 4 ELAEDGYSGVEVR ADGIFKAELNEFLTRELAEDGYSGVEVRVT TRELAEDGYSGVEVRVTPTRTEIIILATRT R E L V R V 1 1 0 1 0 0 3 2 0 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1422.6627 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 28 40 RPS3 40S ribosomal protein S3 yes no 2 1.6766E-22 201.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 4 4 2 8 1.1219 0.96439 44.08 33 Median 0.88462 0.85857 70.424 7 0 Median 1.131 0.9445 20.119 8 2 Median 1.1038 1.0643 76.625 4 0 Median 1.3424 1.1179 22.718 4 0 Median 0.86864 0.88655 1.4725 2 0 Median 1.3052 1.0103 14.737 8 2 Median 593410000 274340000 319070000 188230000 89301000 98931000 230560000 108030000 122530000 115910000 51785000 64127000 28396000 11791000 16604000 4243600 2191700 2051900 26070000 11243000 14827000 6899 2112 7170 34865;34866;34867;34868;34869;34870;34871;34872;34873;34874;34875;34876;34877;34878;34879;34880;34881;34882;34883;34884;34885;34886;34887;34888;34889;34890;34891;34892;34893;34894;34895;34896;34897 35026;35027;35028;35029;35030;35031;35032;35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044;35045;35046;35047;35048;35049;35050;35051;35052;35053;35054;35055;35056;35057;35058;35059;35060;35061;35062;35063;35064;35065;35066;35067;35068;35069;35070;35071;35072;35073;35074;35075;35076 35041 50 ELAELVKR MHNKAAPPQIPDTRRELAELVKRKQELAET QIPDTRRELAELVKRKQELAETLANLERQI R E L K R K 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 1 956.56548 Q9HAF1 Q9HAF1 18 25 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2 0.0062551 81.784 By MS/MS By MS/MS 1 1 1.1228 1.1688 40.651 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85442 0.87678 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4754 1.558 NaN 1 0 Median NaN NaN NaN 0 0 Median 4184800 2124800 2059900 0 0 0 0 0 0 1646900 996850 650020 0 0 0 2537900 1128000 1409900 0 0 0 6900 4008 7171 34898;34899 35077;35078 35077 2 ELAEQELEK ARRRGKAEEQAVRQRELAEQELEKQRQLAE QAVRQRELAEQELEKQRQLAEGTAQQRLAA R E L E K Q 1 0 0 0 0 1 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1087.5397 Q15149 Q15149 1825 1833 PLEC Plectin yes yes 2 2.5653E-35 180.34 By MS/MS By MS/MS By MS/MS 1 1 1 1.3384 1.2392 21.598 2 Median NaN NaN NaN 0 0 Median 1.194 1.0637 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5004 1.4437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23255000 10110000 13144000 0 0 0 21154000 9097500 12056000 0 0 0 2100700 1012800 1088000 0 0 0 0 0 0 6901 2933 7172 34900;34901;34902 35079;35080;35081;35082 35079 4 ELAEQELEKQR ARRRGKAEEQAVRQRELAEQELEKQRQLAE VRQRELAEQELEKQRQLAEGTAQQRLAAEQ R E L Q R Q 1 1 0 0 0 2 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1371.6994 Q15149 Q15149 1825 1835 PLEC Plectin yes yes 2;3 0.0010364 74.165 By MS/MS 2 1.2836 1.3164 13.738 2 Median 1.2836 1.3164 13.738 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6413500 3072400 3341100 6413500 3072400 3341100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6902 2933 7173 34903;34904 35083;35084 35083 2 ELAEQLGLSTGEK TTRCPYKDTLGPMQKELAEQLGLSTGEKEK QKELAEQLGLSTGEKEKLPGELEPVQATQN K E L E K E 1 0 0 0 0 1 3 2 0 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1373.7038 O75821;K7ER90;K7EL20 O75821 181 193 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 2.5582E-10 177.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1.0628 0.90197 28.861 7 Median 1.1802 1.0884 NaN 1 0 Median 1.0462 0.89133 30.922 3 0 Median 1.261 1.3015 NaN 1 0 Median 1.0628 0.90197 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73939 0.6157 NaN 1 0 Median 82074000 36533000 45541000 23992000 10307000 13685000 22860000 10784000 12075000 28918000 12519000 16399000 4823700 2156000 2667600 0 0 0 1481300 766910 714410 6903 1697 7174 34905;34906;34907;34908;34909;34910;34911 35085;35086;35087;35088;35089;35090;35091 35085 7 ELAEQLGLSTGEKEK TTRCPYKDTLGPMQKELAEQLGLSTGEKEK ELAEQLGLSTGEKEKLPGELEPVQATQNKT K E L E K L 1 0 0 0 0 1 4 2 0 0 3 2 0 0 0 1 1 0 0 0 0 0 15 1 1630.8414 O75821;K7ER90;K7EL20 O75821 181 195 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2;3 5.0014E-09 106.49 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1.0597 1.0153 19.121 7 Median 1.164 1.0826 9.0776 2 0 Median 1.0316 0.9367 4.0721 2 0 Median 0.83953 0.91486 32.866 2 0 Median 1.4523 1.2932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33496000 16568000 16928000 20123000 9749000 10374000 2688800 1316400 1372300 9143500 4780600 4362900 1540900 722050 818890 0 0 0 0 0 0 6904 1697 7175 34912;34913;34914;34915;34916;34917;34918 35092;35093;35094;35095;35096;35097 35092 6 ELAEQLGLSTGEKEKLPGELEPVQATQNK TTRCPYKDTLGPMQKELAEQLGLSTGEKEK KLPGELEPVQATQNKTGKYVPPSLRDGASR K E L N K T 2 0 1 0 0 3 6 3 0 0 5 3 0 0 2 1 2 0 0 1 0 0 29 2 3135.6299 O75821;K7ER90;K7EL20 O75821 181 209 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 4 0.0039038 26.187 By MS/MS 1 0.66223 0.67906 NaN 1 Median 0.66223 0.67906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8067900 3155700 4912300 8067900 3155700 4912300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6905 1697 7176 34919 35098 35098 1 ELAEQTLNNIK FLPNAPKALIVEPSRELAEQTLNNIKQFKK EPSRELAEQTLNNIKQFKKYIDNPKLRELL R E L I K Q 1 0 2 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1271.6721 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 216 226 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 5.5479E-05 153.08 By matching By matching By MS/MS By MS/MS By matching 2 2 3 3 1 1.1172 1.0954 23.606 10 Median 0.79562 0.7354 11.369 2 0 Median 1.2593 1.0892 17.416 2 0 Median 1.1014 1.1152 19.76 3 0 Median 1.2401 1.0697 6.5186 2 0 Median 1.1334 1.303 NaN 1 0 Median NaN NaN NaN 0 0 Median 202400000 94995000 107400000 30065000 16329000 13736000 42420000 18444000 23976000 101280000 47779000 53497000 26811000 11558000 15254000 1824900 885590 939350 0 0 0 6906 135 7177 34920;34921;34922;34923;34924;34925;34926;34927;34928;34929;34930 35099;35100;35101;35102;35103 35100 5 ELAESDFASTFR GVYVFGELLDMPNVRELAESDFASTFRLLT NVRELAESDFASTFRLLTVFAYGTYADYLA R E L F R L 2 1 0 1 0 0 2 0 0 0 1 0 0 2 0 2 1 0 0 0 0 0 12 0 1371.6307 Q9UBW8;F5H7C6;F5GYF7;F5H248;F5H4U8 Q9UBW8 54 65 COPS7A COP9 signalosome complex subunit 7a yes no 2 0.0002496 84.17 By matching By matching By MS/MS By matching By matching 1 2 2 1 1 1.2245 1.0278 27.277 7 Median 1.8095 1.7534 NaN 1 0 Median 1.3776 1.1728 24.843 2 0 Median 1.1116 1.0759 27.911 2 1 Median 1.2245 1.0278 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0133 0.82726 NaN 1 0 Median 11392000 4528700 6863200 2025600 680880 1344700 1887600 777360 1110200 6514500 2650000 3864400 551340 219190 332150 0 0 0 412990 201290 211710 6907 4253 7178 34931;34932;34933;34934;34935;34936;34937 35104;35105;35106 35104 3 ELAETLQQK MRKVVLEAPDETTLKELAETLQQKNIDHML DETTLKELAETLQQKNIDHMLWLEQPENIA K E L Q K N 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 Q6GMV3 Q6GMV3 93 101 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 2 0.0017271 78.324 By MS/MS 1 2.475 2.0641 NaN 1 Median NaN NaN NaN 0 0 Median 2.475 2.0641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372800 697310 1675500 0 0 0 2372800 697310 1675500 0 0 0 0 0 0 0 0 0 0 0 0 6908 3135 7179 34938 35107 35107 1 ELAEVADEYMFSLEENK CTRKKGSAARSFSERELAEVADEYMFSLEE AEVADEYMFSLEENKKSKGRRQPLSKLPRH R E L N K K 2 0 1 1 0 0 5 0 0 0 2 1 1 1 0 1 0 0 1 1 0 0 17 0 2015.9034 O75164 O75164 575 591 KDM4A Lysine-specific demethylase 4A yes yes 3 0.055864 9.6577 By MS/MS By matching 1 1 2.3193 2.0456 116.63 2 Median 0.95956 0.8967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.6058 4.6665 NaN 1 0 Median 9666900 4249000 5418000 7290400 3879900 3410500 0 0 0 0 0 0 0 0 0 0 0 0 2376600 369070 2007500 6909 1652 7180 34939;34940 35108 35108 1 ELAFGDHELVIR PRRFMGNSSEDALDRELAFGDHELVIRGTR LDRELAFGDHELVIRGTRLVLPMDDSEPPL R E L I R G 1 1 0 1 0 0 2 1 1 1 2 0 0 1 0 0 0 0 0 1 0 0 12 0 1397.7303 A0A0D9SGH0;A0A1B0GW29;A0A1B0GV11;Q92581 A0A0D9SGH0 642 653 SLC9A6 Sodium/hydrogen exchanger 6 yes no 2 0.016133 34.532 By MS/MS 1 0.70945 0.69809 NaN 1 Median 0.70945 0.69809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6171300 3826200 2345100 6171300 3826200 2345100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6910 273 7181 34941 35109 35109 1 ELAFQISK PVTGQVSVLVMCHTRELAFQISKEYERFSK LVMCHTRELAFQISKEYERFSKYMPNVKVA R E L S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 934.51238 O00148;K7EQN7;K7EPJ3;K7EN69;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;F6S4E6;A0A140T9K1;A0A140T973;A0A140T9L4;F6R6M7;F6QYI9;A0A0G2JJL7;A0A140T9N3;A0A140T9K2;A0A0D9SEM9 Q13838 124 131 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 0.0028746 103.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 3 1.0701 1.0477 16.68 12 Median 1.1231 1.0376 11.378 2 0 Median 1.4262 1.2075 NaN 1 0 Median 1.0446 0.98573 3.6725 3 0 Median 1.3293 1.1471 14.13 3 0 Median 1.067 1.0748 27.833 3 1 Median NaN NaN NaN 0 0 Median 769150000 345780000 423380000 61343000 27050000 34293000 17042000 6463300 10579000 315110000 148840000 166280000 300410000 129080000 171330000 75241000 34343000 40897000 0 0 0 6911 2842;1441;260 7182 34942;34943;34944;34945;34946;34947;34948;34949;34950;34951;34952;34953 35110;35111;35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123 35121 14 ELAFQISKEYER PVTGQVSVLVMCHTRELAFQISKEYERFSK HTRELAFQISKEYERFSKYMPNVKVAVFFG R E L E R F 1 1 0 0 0 1 3 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 12 1 1511.762 O00148;K7EQN7;K7EPJ3;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;F6S4E6;A0A140T9K1;A0A140T973;A0A140T9L4;F6R6M7;F6QYI9;A0A0G2JJL7;A0A140T9N3;A0A140T9K2;A0A0D9SEM9 Q13838 124 135 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 3 2.608E-05 92.866 By MS/MS By MS/MS 1 1 1.3221 1.3112 2.4794 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3443 1.2884 NaN 1 0 Median 1.3003 1.3344 NaN 1 0 Median NaN NaN NaN 0 0 Median 13459000 5497600 7961200 0 0 0 0 0 0 0 0 0 5596800 2504600 3092200 7862000 2993000 4869000 0 0 0 6912 2842;1441;260 7183 34954;34955 35124;35125;35126 35125 3 ELAGGLEDGEPQQK EKRELRQVRAALLSRELAGGLEDGEPQQKR RELAGGLEDGEPQQKRAHTEEPQAKKVRAQ R E L Q K R 1 0 0 1 0 2 3 3 0 0 2 1 0 0 1 0 0 0 0 0 0 0 14 0 1469.6998 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 798 811 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.00086863 57.492 By MS/MS By MS/MS 1 2 0.82702 0.7423 16.894 3 Median 0.67116 0.65603 NaN 1 0 Median 0.83406 0.82472 14.89 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5495900 3012800 2483100 2595900 1467400 1128500 2900000 1545400 1354700 0 0 0 0 0 0 0 0 0 0 0 0 6913 3782 7184 34956;34957;34958 35127;35128;35129 35128 3 ELAGGLEDGEPQQKR EKRELRQVRAALLSRELAGGLEDGEPQQKR ELAGGLEDGEPQQKRAHTEEPQAKKVRAQ_ R E L K R A 1 1 0 1 0 2 3 3 0 0 2 1 0 0 1 0 0 0 0 0 0 0 15 1 1625.8009 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 798 812 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 3 0.003182 27.335 By MS/MS 1 1.0622 1.0796 NaN 1 Median 1.0622 1.0796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 920220 354480 565750 920220 354480 565750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6914 3782 7185 34959 35130 35130 1 ELAGHTGYLSCCR IYNLKTREGNVRVSRELAGHTGYLSCCRFL SRELAGHTGYLSCCRFLDDNQIVTSSGDTT R E L C R F 1 1 0 0 2 0 1 2 1 0 2 0 0 0 0 1 1 0 1 0 0 0 13 0 1522.6657 P62873;F6UT28;F6X3N5;B3KVK2 P62873 138 150 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 3 0.00070293 60.628 By MS/MS 2 1.2425 1.0381 4.6407 2 Median NaN NaN NaN 0 0 Median 1.2425 1.0381 4.6407 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7321900 3230200 4091700 0 0 0 7321900 3230200 4091700 0 0 0 0 0 0 0 0 0 0 0 0 6915 2603 7186 34960;34961 35131;35132 35131 2 ELAGNTSSPPLSPGRPSPMQR MAMEPPAMDFSRRLRELAGNTSSPPLSPGR SSPPLSPGRPSPMQRLLQPFQPGSKPPFLA R E L Q R L 1 2 1 0 0 1 1 2 0 0 2 0 1 0 5 4 1 0 0 0 0 0 21 1 2178.0851 Q9H165;A0A2U3TZJ5 Q9H165 321 341 BCL11A B-cell lymphoma/leukemia 11A yes no 3 0.015052 23.447 By MS/MS 1 0.36809 0.42532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36809 0.42532 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516100 2611500 904630 0 0 0 0 0 0 3516100 2611500 904630 0 0 0 0 0 0 0 0 0 6916 405 7187 34962 35133 35133 1 ELALGQDR DNRSHSAHFFEFLTKELALGQDRILIRFFP FFEFLTKELALGQDRILIRFFPLESWQIGK K E L D R I 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 900.46649 P30046;J3KQ18;B5MC82;A6NHG4 P30046 88 95 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2 0.002603 124.83 By MS/MS By MS/MS By matching 2 1 1 1.1694 1.0638 23.396 4 Median 0.86825 0.89057 16.251 2 0 Median 1.3303 1.1328 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7395 1.3882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31056000 13693000 17363000 12527000 5985200 6541700 18275000 7622600 10653000 0 0 0 254220 85314 168900 0 0 0 0 0 0 6917 2182 7188 34963;34964;34965;34966 35134;35135 35135 2 ELALGSNK CRDLCGIVASKASLRELALGSNKLGDVGMA ASKASLRELALGSNKLGDVGMAELCPGLLH R E L N K L 1 0 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 830.44978 P13489;H0YCR7 P13489 231 238 RNH1 Ribonuclease inhibitor yes no 2 0.0052665 76.774 By MS/MS 1 1.196 1.0256 NaN 1 Median NaN NaN NaN 0 0 Median 1.196 1.0256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4181300 1860300 2321000 0 0 0 4181300 1860300 2321000 0 0 0 0 0 0 0 0 0 0 0 0 6918 1991 7189 34967 35136;35137 35137 2 ELALPGELTQSR FNDKSNTHEFVNLVKELALPGELTQSRSYD LVKELALPGELTQSRSYDFEFMQVEKPYES K E L S R S 1 1 0 0 0 1 2 1 0 0 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1312.6987 O75436;S4R3Q6 O75436 94 105 VPS26A Vacuolar protein sorting-associated protein 26A yes no 2 0.0060997 39.305 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.0076 0.87215 19.84 6 Median 0.74339 0.71394 NaN 1 0 Median 1.024 0.87215 2.4356 2 0 Median 1.0039 0.98651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2143 1.2883 NaN 1 0 Median 0.95704 0.83999 NaN 1 0 Median 577620000 325750000 251880000 569700000 321850000 247850000 2925600 1370600 1555000 2680000 1486300 1193700 0 0 0 2211700 993270 1218400 108160 49725 58430 6919 1671 7190 34968;34969;34970;34971;34972;34973 35138;35139;35140 35139 3 ELALQITK EEGEGPIAVIMTPTRELALQITKECKKFSK VIMTPTRELALQITKECKKFSKTLGLRVVC R E L T K E 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 914.54368 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 456 463 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.008272 63.565 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.2571 1.2875 18.104 8 Median 1.2471 1.231 NaN 1 0 Median 1.3008 1.1471 22.669 2 0 Median 1.1197 1.1959 18.222 2 0 Median 1.5059 1.2856 32.058 2 0 Median 1.3839 1.4508 NaN 1 0 Median NaN NaN NaN 0 0 Median 18744000 8547600 10197000 1911500 984070 927440 4261800 1716300 2545400 9389900 4470800 4919100 1987300 841490 1145800 1193700 534990 658740 0 0 0 6920 3216 7191 34974;34975;34976;34977;34978;34979;34980;34981 35141;35142;35143;35144 35141 4 ELALQPKDDIVDR AVAELKARKRVLEAKELALQPKDDIVDRAK AKELALQPKDDIVDRAKMEDTLKRRFFYDQ K E L D R A 1 1 0 3 0 1 1 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 13 1 1510.7991 P41250 P41250 109 121 GARS Glycine--tRNA ligase yes yes 2;3 0.00035484 59.185 By MS/MS 2 0.90938 0.93282 6.5632 2 Median 0.90938 0.93282 6.5632 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10885000 5768700 5116600 10885000 5768700 5116600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6921 2301 7192 34982;34983 35145;35146 35145 2 ELALQSFDTVQK QRSDGPYALVLVPTRELALQSFDTVQKLLK PTRELALQSFDTVQKLLKPFTWIVPGVLMG R E L Q K L 1 0 0 1 0 2 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1377.714 F8WAJ0;Q9H8H2 F8WAJ0 211 222 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 2 0.0024834 75.509 By MS/MS 1 1.1939 1.234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1939 1.234 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7160900 3257900 3903000 0 0 0 0 0 0 7160900 3257900 3903000 0 0 0 0 0 0 0 0 0 6922 1092 7193 34984 35147 35147 1 ELALTLQTMR E L M R 1 1 0 0 0 1 1 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 10 0 1174.638 REV__F6U4U2 yes no 2 0.058207 42.869 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936100 4936100 0 0 0 0 0 0 0 0 0 0 4936100 4936100 0 0 0 0 0 0 0 + 6923 4520 7194 34985 35148 35148 2004 1 ELAMPGEDLK LTWDMACRIILPPEKELAMPGEDLKFNLIL LPPEKELAMPGEDLKFNLILRQPMILEKGQ K E L L K F 1 0 0 1 0 0 2 1 0 0 2 1 1 0 1 0 0 0 0 0 0 0 10 0 1101.5376 P49411 P49411 396 405 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.004358 68.016 By MS/MS By MS/MS By MS/MS 1 2 2 0.81446 0.72893 14.401 4 Median 0.78511 0.74114 NaN 1 0 Median 0.96512 0.82557 19.956 2 1 Median 0.71524 0.69258 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26655000 14172000 12483000 5055800 2234900 2820900 10528000 5747100 4780500 11071000 6190100 4881300 0 0 0 0 0 0 0 0 0 6924 2382 7195 34986;34987;34988;34989;34990 35149;35150;35151;35152 35150 4 ELAMQTFGVLK MPRNGTGVLILSPTRELAMQTFGVLKELMT SPTRELAMQTFGVLKELMTHHVHTYGLIMG R E L L K E 1 0 0 0 0 1 1 1 0 0 2 1 1 1 0 0 1 0 0 1 0 0 11 0 1235.6584 Q9NVP1 Q9NVP1 262 272 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00016096 90.629 By matching By matching By MS/MS By MS/MS By matching 1 1 2 4 2 1.268 1.2299 9.6138 10 Median 1.2874 1.3014 NaN 1 0 Median 1.2913 1.1064 NaN 1 0 Median 1.2837 1.2918 11.381 2 0 Median NaN NaN NaN 0 0 Median 1.2205 1.2065 7.9794 4 0 Median 1.5505 1.2994 14.642 2 0 Median 83706000 35592000 48114000 1103400 439910 663450 1006600 434940 571650 39242000 16502000 22740000 0 0 0 38842000 16848000 21994000 3512000 1367800 2144200 6925 4137 7196;7197 34991;34992;34993;34994;34995;34996;34997;34998;34999;35000 35153;35154;35155;35156;35157;35158;35159 35157 1888 7 ELAPLQELIEK HFIFFVQEFNLIDRRELAPLQELIEKLTSK IDRRELAPLQELIEKLTSKDR_________ R E L E K L 1 0 0 0 0 1 3 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1281.718 Q7L9L4;Q9H8S9 Q7L9L4 200 210 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 2 0.005015 46.891 By MS/MS By matching By MS/MS 1 1 3 0.95791 0.80061 7.6402 5 Median 0.8598 0.80061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0811 0.88756 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98821 0.8165 6.538 3 0 Plateau 25194000 12711000 12484000 15858000 8218700 7639400 0 0 0 0 0 0 367950 182460 185480 0 0 0 8968500 4309800 4658700 6926 3229 7198 35001;35002;35003;35004;35005 35160;35161;35162 35162 3 ELAPYDENWFYTR KVPEWVDTVKLAKHKELAPYDENWFYTRAA HKELAPYDENWFYTRAASTARHLYLRGGAG K E L T R A 1 1 1 1 0 0 2 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 13 0 1702.7627 P39019;M0R2L9;M0QYF7;M0R140 P39019 44 56 RPS19 40S ribosomal protein S19 yes no 2 2.7171E-05 93.058 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 1.0223 0.89885 8.7445 8 Median 0.90531 0.86369 NaN 1 0 Median 1.0162 0.84958 0.19873 2 0 Median 1.0211 1.0317 NaN 1 0 Median 1.0398 0.84835 NaN 1 0 Median 0.96431 1.0201 NaN 1 0 Median 1.2358 0.96497 4.3952 2 0 Median 78171000 38828000 39343000 31903000 16633000 15270000 10404000 5083700 5320500 31969000 15320000 16649000 255430 127780 127650 2369000 1098500 1270500 1270700 565350 705350 6927 2280 7199 35006;35007;35008;35009;35010;35011;35012;35013 35163;35164;35165;35166;35167;35168;35169;35170;35171;35172 35171 10 ELAQIAGRPTEDEDEKEK FLAIDAKLTTEEVIKELAQIAGRPTEDEDE QIAGRPTEDEDEKEKVADEDDVDNEEAALL K E L E K V 2 1 0 2 0 1 5 1 0 1 1 2 0 0 1 0 1 0 0 0 0 0 18 2 2056.9913 O15355 O15355 113 130 PPM1G Protein phosphatase 1G yes yes 3;4 3.6737E-08 89.344 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 0.84064 0.84952 9.3853 8 Median 0.79393 0.85947 7.4002 2 0 Median 0.89353 0.78274 7.2992 3 0 Median 0.72961 0.83208 NaN 1 0 Median 0.92308 0.94777 12.544 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73260000 39045000 34215000 35209000 19805000 15403000 32498000 16412000 16086000 2299600 1204600 1095000 3253900 1622800 1631100 0 0 0 0 0 0 6928 1538 7200 35014;35015;35016;35017;35018;35019;35020;35021 35173;35174;35175;35176;35177;35178;35179;35180;35181;35182;35183;35184;35185 35174 13 ELAQLKEQGLLNR EELDELKRKYDASLKELAQLKEQGLLNRER LKELAQLKEQGLLNRERDALLSETAFSMNS K E L N R E 1 1 1 0 0 2 2 1 0 0 4 1 0 0 0 0 0 0 0 0 0 0 13 1 1510.8467 Q14789 Q14789 2767 2779 GOLGB1 Golgin subfamily B member 1 yes yes 3 1.2582E-05 90.614 By MS/MS 1 1.1528 1.1894 NaN 1 Median 1.1528 1.1894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6217000 2804600 3412500 6217000 2804600 3412500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6929 2900 7201 35022 35186 35186 1 ELAQNASSDTPMDPVTFIQTLPSDLRR QEEVLAQQRAEQQRRELAQNASSDTPMDPV DPVTFIQTLPSDLRRSVLEDMEDSVLAVMP R E L R R S 2 2 1 3 0 2 1 0 0 1 3 0 1 1 3 3 3 0 0 1 0 0 27 1 3001.4815 Q7Z6Z7 Q7Z6Z7 3045 3071 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.023573 12.939 By MS/MS 2 0.58675 0.63253 4.5523 2 Median 0.58675 0.63253 4.5523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8350300 4978100 3372200 8350300 4978100 3372200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6930 3253 7202 35023;35024 35187;35188;35189 35189 3 ELAQQIEEETIK ESDQGPYAIILAPTRELAQQIEEETIKFGK PTRELAQQIEEETIKFGKPLGIRTVAVIGG R E L I K F 1 0 0 0 0 2 4 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1429.73 Q9BUQ8 Q9BUQ8 479 490 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 6.0669E-05 123.75 By MS/MS By MS/MS By MS/MS 1 2 2 1.2373 1.2262 8.1208 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1134 1.1934 NaN 1 0 Median 1.3315 1.1592 11.772 2 0 Median 1.2438 1.2737 NaN 1 1 Median NaN NaN NaN 0 0 Median 78700000 37957000 40742000 0 0 0 0 0 0 55871000 28404000 27467000 14215000 6179400 8035600 8613200 3373600 5239600 0 0 0 6931 3842 7203 35025;35026;35027;35028;35029 35190;35191;35192;35193;35194 35191 5 ELAQQIQK LDLKATQALVLAPTRELAQQIQKVVMALGD LVLAPTRELAQQIQKVVMALGDYMGASCHA R E L Q K V 1 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 956.5291 P60842;J3KT12;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25;Q14240;E7EQG2;J3KSN7 P60842 111 118 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.0023313 113.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 2 2 1 5 1.1009 0.95269 11.056 16 Median 1.0618 0.99344 13.306 2 0 Median 1.1184 0.94964 10.101 4 0 Median 1.1722 1.2009 5.6019 2 0 Median 1.1029 0.9544 1.5771 2 0 Median 0.91947 0.96165 NaN 1 0 Median 1.0832 0.89023 6.0098 5 0 Median 125780000 59789000 65995000 12400000 5407000 6992700 82181000 39780000 42401000 16184000 7293900 8890600 4686900 2296100 2390700 1054500 597130 457350 9277200 4414900 4862300 6932 2529;2867 7204 35030;35031;35032;35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044;35045 35195;35196;35197;35198;35199;35200;35201;35202;35203;35204;35205;35206;35207 35199 13 ELAQQVQQVAAEYCR ERGDGPICLVLAPTRELAQQVQQVAAEYCR ELAQQVQQVAAEYCRACRLKSTCIYGGAPK R E L C R A 3 1 0 0 1 4 2 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 15 0 1791.8574 J3KTA4;P17844;J3KRZ1;J3QRQ7 J3KTA4 178 192 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 3.049E-09 155.97 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 1.2257 1.23 51.547 7 Median 1.4838 1.4783 NaN 1 0 Median 1.2151 1.0668 NaN 1 0 Median 1.2289 1.3028 0.31057 2 0 Median NaN NaN NaN 0 0 Median 1.114 1.1148 73.762 3 1 Median NaN NaN NaN 0 0 Median 31206000 16699000 14507000 2835900 1182500 1653300 660050 269220 390830 5067000 2416200 2650900 0 0 0 22643000 12831000 9811900 0 0 0 6933 1334 7205 35046;35047;35048;35049;35050;35051;35052 35208;35209;35210;35211;35212;35213 35209 6 ELAQQVQQVADDYGK ERGDGPICLVLAPTRELAQQVQQVADDYGK ELAQQVQQVADDYGKCSRLKSTCIYGGAPK R E L G K C 2 0 0 2 0 4 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 15 0 1690.8162 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 255 269 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 3.6549E-40 166.14 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 7 3 6 1.0782 1.0169 16.607 20 Median 1.1324 1.0135 27.622 3 3 Median 1.2049 1.0237 NaN 1 0 Median 1.1031 1.117 14.427 7 1 Median 1.2385 1.048 18.105 3 0 Plateau 0.95684 0.96031 11.421 6 0 Median NaN NaN NaN 0 0 Median 376150000 180970000 195180000 50785000 21272000 29513000 4793600 2181300 2612300 222020000 109690000 112330000 18341000 7900500 10441000 80211000 39929000 40281000 0 0 0 6934 343 7206 35053;35054;35055;35056;35057;35058;35059;35060;35061;35062;35063;35064;35065;35066;35067;35068;35069;35070;35071;35072 35214;35215;35216;35217;35218;35219;35220;35221;35222;35223;35224;35225;35226;35227;35228;35229;35230;35231;35232;35233;35234;35235;35236;35237;35238;35239;35240;35241;35242 35215 29 ELAQQVTPGDIVSTYGVR YREMHLAEQVTNNLKELAQQVTPGDIVSTY QQVTPGDIVSTYGVRKAMGISIPSPVMENN K E L V R K 1 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 2 0 1 3 0 0 18 0 1931.9953 Q9NPI1;I3L4V5 Q9NPI1 595 612 BRD7 Bromodomain-containing protein 7 yes no 2 9.4773E-08 90.731 By MS/MS By matching 2 1 0.69668 0.71372 22.798 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68084 0.71256 0.23006 2 0 Median 1.2378 1.0576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12280000 7042700 5237400 0 0 0 0 0 0 11652000 6751800 4900000 628310 290880 337430 0 0 0 0 0 0 6935 4053 7207 35073;35074;35075 35243;35244;35245 35245 3 ELASQPDVDGFLVGGASLKPEFVDIINAK TRIIYGGSVTGATCKELASQPDVDGFLVGG GASLKPEFVDIINAKQ______________ K E L A K Q 3 0 1 3 0 1 2 3 0 2 3 2 0 2 2 2 0 0 0 3 0 0 29 1 3028.5757 P60174 P60174 257 285 TPI1 Triosephosphate isomerase yes yes 3 2.3771E-07 47.099 By MS/MS 4 0.91002 0.81575 37.865 4 Median NaN NaN NaN 0 0 Median 0.91002 0.81575 37.865 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9940800 5157600 4783200 0 0 0 9940800 5157600 4783200 0 0 0 0 0 0 0 0 0 0 0 0 6936 2523 7208 35076;35077;35078;35079 35246;35247;35248;35249 35246 4 ELASSEQNKNHINNELK KEINQTRDRLAKLNKELASSEQNKNHINNE ASSEQNKNHINNELKRKEEQLSSYEDKLFD K E L L K R 1 0 4 0 0 1 3 0 1 1 2 2 0 0 0 2 0 0 0 0 0 0 17 1 1966.9708 Q92878;A0A1W2PQ90;A0A494C1B7;E7EN38 Q92878 600 616 RAD50 DNA repair protein RAD50 yes no 3;4 0.062202 9.9585 By matching By MS/MS By MS/MS 2 2 2 0.98355 1.0592 14.843 6 Median 0.90407 0.93924 19.121 2 0 Median NaN NaN NaN 0 0 Median 0.92526 1.0592 1.004 2 0 Median 1.2517 1.167 16.175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9458600 4608900 4849700 1628000 793400 834640 0 0 0 6392100 3235000 3157200 1438400 580490 857920 0 0 0 0 0 0 6937 3561 7209 35080;35081;35082;35083;35084;35085 35250;35251 35250 2 ELASSEQNKNHINNELKR KEINQTRDRLAKLNKELASSEQNKNHINNE SSEQNKNHINNELKRKEEQLSSYEDKLFDV K E L K R K 1 1 4 0 0 1 3 0 1 1 2 2 0 0 0 2 0 0 0 0 0 0 18 2 2123.0719 Q92878;A0A1W2PQ90;A0A494C1B7;E7EN38 Q92878 600 617 RAD50 DNA repair protein RAD50 yes no 4 0.0086712 23.562 By matching By MS/MS By matching 1 1 1 1.1333 1.198 15.837 3 Median 1.1333 1.198 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83088 0.94677 NaN 1 0 Median 1.1432 1.2796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4972000 2577400 2394600 1287200 597750 689460 0 0 0 2774800 1592900 1181900 910010 386750 523260 0 0 0 0 0 0 6938 3561 7210 35086;35087;35088 35252;35253 35253 2 ELATLLHMK RPLMGMSLALQCQVRELATLLHMKDLEIQD LQCQVRELATLLHMKDLEIQDYQESGATLI R E L M K D 1 0 0 0 0 0 1 0 1 0 3 1 1 0 0 0 1 0 0 0 0 0 9 0 1054.5845 H7C0G7;Q9H9Q4;C9JWV4;G5E9Q8 H7C0G7 72 80 NHEJ1 Non-homologous end-joining factor 1 yes no 2 0.0078737 50.607 By MS/MS By matching 2 1 1.2842 1.3107 10.405 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2583 1.3181 0.79348 2 0 Median 1.2842 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8978900 3528800 5450100 0 0 0 0 0 0 8796400 3456200 5340200 182500 72604 109900 0 0 0 0 0 0 6939 1256 7211 35089;35090;35091 35254;35255 35254 2 ELATLQR QLPQVYPFAADLYQKELATLQRQSPEHNLT FAADLYQKELATLQRQSPEHNLTHPELSVA K E L Q R Q 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 829.46577 P46940;A0A0J9YXZ5 P46940 432 438 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.011827 79.454 By MS/MS By MS/MS 1 2 1.1249 1.1142 9.9361 3 Median 1.1088 1.1142 NaN 1 0 Median 1.2269 1.055 13.327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12882000 5818400 7063300 1371200 659420 711750 11511000 5159000 6351500 0 0 0 0 0 0 0 0 0 0 0 0 6940 2350 7212 35092;35093;35094 35256;35257;35258;35259 35259 4 ELATNLNVGTSSSAASSLK EIGGLTQVNKNKKWRELATNLNVGTSSSAA NLNVGTSSSAASSLKKQYIQCLYAFECKIE R E L L K K 3 0 2 0 0 0 1 1 0 0 3 1 0 0 0 5 2 0 0 1 0 0 19 0 1848.9429 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;H0Y2R3;H0Y3S9 O14497 1075 1093 ARID1A;ARID1B AT-rich interactive domain-containing protein 1A;AT-rich interactive domain-containing protein 1B no no 2 5.5878E-18 143.93 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.95365 0.83824 33.934 6 Median 0.61263 0.60358 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63386 0.70936 55.028 2 0 Median 1.1232 0.98528 26.901 2 0 Median NaN NaN NaN 0 0 Median 0.99413 0.86256 NaN 1 0 Median 24396000 12778000 11618000 2881500 1663600 1217900 0 0 0 18547000 9799100 8747900 2781400 1208800 1572700 0 0 0 186510 106910 79598 6941 1480;449 7213 35095;35096;35097;35098;35099;35100 35260;35261;35262;35263 35260 4 ELATNLNVGTSSSAASSLKK EIGGLTQVNKNKKWRELATNLNVGTSSSAA LNVGTSSSAASSLKKQYIQCLYAFECKIER R E L K K Q 3 0 2 0 0 0 1 1 0 0 3 2 0 0 0 5 2 0 0 1 0 0 20 1 1977.0378 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;H0Y2R3;H0Y3S9 O14497 1075 1094 ARID1A;ARID1B AT-rich interactive domain-containing protein 1A;AT-rich interactive domain-containing protein 1B no no 2;3 3.7216E-14 101.49 By MS/MS By MS/MS 3 1 0.91247 1.0559 7.7645 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86379 1.0002 7.8991 3 0 Median 1.1794 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107000000 53870000 53132000 0 0 0 0 0 0 98192000 49988000 48204000 8809400 3881700 4927600 0 0 0 0 0 0 6942 1480;449 7214 35101;35102;35103;35104 35264;35265;35266;35267 35264 4 ELATVLSDQPGLLGPK SMHRERRKFLRSALKELATVLSDQPGLLGP LATVLSDQPGLLGPKALFVFMALSFARDEI K E L P K A 1 0 0 1 0 1 1 2 0 0 4 1 0 0 2 1 1 0 0 1 0 0 16 0 1636.9036 Q9Y2A7 Q9Y2A7 352 367 NCKAP1 Nck-associated protein 1 yes yes 2 0.00013928 61.344 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.8315 0.7768 8.1166 4 Median 0.71276 0.697 NaN 1 0 Median 0.88049 0.77201 NaN 1 0 Median 0.78523 0.84961 NaN 1 0 Median 0.90717 0.78161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13131000 7210500 5920400 4563500 2789900 1773600 1522800 772510 750290 2872400 1563000 1309400 4172100 2085100 2087000 0 0 0 0 0 0 6943 4383 7215 35105;35106;35107;35108 35268;35269 35269 2 ELAVEGMHR KTGFFEFQAAKDKYRELAVEGMHRELVFRF AKDKYRELAVEGMHRELVFRFIEVQTLLLA R E L H R E 1 1 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1040.5073 Q9P2J5 Q9P2J5 837 845 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00048284 109.86 By MS/MS By MS/MS By matching 1 1 1 1.1607 0.96492 21.792 3 Plateau 0.94717 0.9178 NaN 1 1 Median 1.1607 0.96492 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75691 0.64682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23587000 10509000 13078000 3636000 1791000 1845100 19168000 8307900 10860000 0 0 0 783420 410280 373130 0 0 0 0 0 0 6944 4224 7216 35109;35110;35111 35270;35271 35270 2 ELAVQIQK IQVRETQALILAPTRELAVQIQKGLLALGD LILAPTRELAVQIQKGLLALGDYMNVQCHA R E L Q K G 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 927.53893 P38919 P38919 117 124 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.0023524 122.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 3 1.2887 1.1535 15.827 12 Median 1.3961 1.2909 NaN 1 0 Median 1.2334 1.0513 NaN 1 1 Median 1.3412 1.367 27.861 2 0 Median 1.4038 1.2248 4.6389 2 0 Median 1.2674 1.2115 12.621 3 0 Median 1.2568 1.0259 11.137 3 0 Median 181450000 78775000 102680000 16598000 7361600 9236500 10952000 5185500 5766400 35248000 15294000 19954000 55213000 23403000 31810000 34072000 15370000 18701000 29372000 12161000 17211000 6945 2278 7217 35112;35113;35114;35115;35116;35117;35118;35119;35120;35121;35122;35123 35272;35273;35274;35275;35276;35277;35278;35279;35280;35281;35282;35283 35278 12 ELAVQIYEEAR RRKQYPISLVLAPTRELAVQIYEEARKFSY APTRELAVQIYEEARKFSYRSRVRPCVVYG R E L A R K 2 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1319.6721 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 276 286 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 4.2112E-06 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 2 1 1.0745 0.95281 15.84 10 Median 1.1249 1.0653 28.546 2 0 Median 1.0818 0.93599 NaN 1 0 Median 0.973 0.96993 17.113 3 1 Median 1.0921 0.91359 NaN 1 0 Median 1.0884 1.0977 16.488 2 0 Median 1.0673 0.86707 NaN 1 0 Median 89321000 42419000 46902000 22295000 11784000 10510000 9717300 4461500 5255800 29166000 13620000 15546000 3245600 1529400 1716200 22279000 9763700 12516000 2618800 1260600 1358200 6946 263 7218 35124;35125;35126;35127;35128;35129;35130;35131;35132;35133 35284;35285;35286;35287;35288;35289;35290;35291;35292;35293;35294;35295;35296;35297 35288 14 ELAVQIYEEARK RRKQYPISLVLAPTRELAVQIYEEARKFSY PTRELAVQIYEEARKFSYRSRVRPCVVYGG R E L R K F 2 1 0 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1447.7671 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 276 287 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 5.2558E-06 107.24 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 1.1109 1.1184 25.315 11 Median 1.0554 1.0582 7.2537 2 0 Median NaN NaN NaN 0 0 Median 1.1289 1.1992 7.4051 2 0 Median NaN NaN NaN 0 0 Median 1.2159 1.2965 12.901 4 0 Median 1.0371 0.9442 30.31 3 0 Median 75519000 32765000 42754000 27573000 12416000 15157000 0 0 0 20828000 8997600 11831000 0 0 0 24136000 9909900 14226000 2981000 1441200 1539800 6947 263 7219 35134;35135;35136;35137;35138;35139;35140;35141;35142;35143;35144 35298;35299;35300;35301;35302;35303;35304;35305;35306;35307;35308;35309;35310 35300 13 ELAYQIAEQFR EDPYGIFCLVLTPTRELAYQIAEQFRVLGK TPTRELAYQIAEQFRVLGKPLGLKDCIIVG R E L F R V 2 1 0 0 0 2 2 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 11 0 1366.6881 Q9Y6V7 Q9Y6V7 81 91 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 2 1.2111E-05 127.3 By MS/MS 1 0.78036 0.76992 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78036 0.76992 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11353000 6127000 5225900 0 0 0 0 0 0 11353000 6127000 5225900 0 0 0 0 0 0 0 0 0 6948 4497 7220 35145 35311 35311 1 ELAYQTFEVLR TSTDGLGVLIISPTRELAYQTFEVLRKVGK SPTRELAYQTFEVLRKVGKNHDFSAGLIIG R E L L R K 1 1 0 0 0 1 2 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1367.7085 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 152 162 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 2 0.00016096 90.629 By matching By MS/MS By MS/MS By matching 1 1 3 1 1.5219 1.5895 70.866 6 Median NaN NaN NaN 0 0 Median 9.0432 8.4452 NaN 1 0 Median 1.1602 1.2357 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.436 1.5158 6.5215 3 0 Median 1.6898 1.8944 NaN 1 0 Median 10490000 3066700 7422800 0 0 0 4093000 471810 3621100 962690 388060 574630 0 0 0 5124000 2073600 3050400 309950 133250 176700 6949 427 7221 35146;35147;35148;35149;35150;35151 35312;35313;35314 35313 3 ELDAISTNEEEKEENEAESDVK QFDPFTVPTISFICRELDAISTNEEEKEEN NEEEKEENEAESDVKHRTRDYKKTSLAPYV R E L V K H 2 0 2 2 0 0 8 0 0 1 1 2 0 0 0 2 1 0 0 1 0 0 22 1 2507.1035 P49642;A0A3B3ITS8 P49642 356 377 PRIM1 DNA primase small subunit yes no 3 3.0931E-07 47.32 By matching By MS/MS 1 1 0.7625 0.76635 18.389 2 Median 0.69798 0.67291 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83298 0.87276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9501100 4896800 4604300 2581800 1452400 1129400 0 0 0 6919400 3444400 3474900 0 0 0 0 0 0 0 0 0 6950 2388 7222 35152;35153 35315 35315 1 ELDALDANDELTPLGR PPPLDAVIEAEHTLRELDALDANDELTPLG LDALDANDELTPLGRILAKLPIEPRFGKMM R E L G R I 2 1 1 3 0 0 2 1 0 0 4 0 0 0 1 0 1 0 0 0 0 0 16 0 1740.853 Q08211 Q08211 838 853 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.1487E-72 248.42 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 5 6 4 4 4 1.0939 1.025 17.082 24 Median 1.0841 1.0435 NaN 1 1 Median 1.2151 1.0477 16.018 5 0 Median 0.92926 1.0259 17.965 6 1 Median 1.3645 1.1742 12.067 4 0 Median 0.98767 1.0044 13.223 4 0 Median 1.1317 0.92375 21.046 4 0 Median 343910000 170020000 173890000 19094000 8878800 10215000 27158000 11864000 15294000 169660000 85778000 83886000 3668800 1530500 2138300 122650000 61251000 61403000 1667900 714470 953470 6951 2736 7223 35154;35155;35156;35157;35158;35159;35160;35161;35162;35163;35164;35165;35166;35167;35168;35169;35170;35171;35172;35173;35174;35175;35176;35177 35316;35317;35318;35319;35320;35321;35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332;35333;35334;35335;35336;35337;35338;35339;35340;35341;35342;35343;35344;35345;35346 35332 31 ELDATATVLANRQDESEQSR MFQYWKRFDLQQLQRELDATATVLANRQDE ATVLANRQDESEQSRKRLIEQSREFKKNTP R E L S R K 3 2 1 2 0 2 3 0 0 0 2 0 0 0 0 2 2 0 0 1 0 0 20 1 2232.0618 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 23 42 CUX1 Protein CASP no no 3 2.1359E-15 85.146 By MS/MS 1 0.27109 0.34246 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27109 0.34246 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14470000 9933500 4536600 0 0 0 0 0 0 14470000 9933500 4536600 0 0 0 0 0 0 0 0 0 6952 388;2847 7224 35178 35347 35347 1 ELDDATEANEGLSR EEATRANASRRKLQRELDDATEANEGLSRE RELDDATEANEGLSREVSTLKNRLRRGGPI R E L S R E 2 1 1 2 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1518.6798 P35580 P35580 1906 1919 MYH10 Myosin-10 yes yes 2 2.7888E-16 183.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1.0574 0.96024 26.11 8 Median 0.95297 0.89412 NaN 1 0 Median 1.106 0.94818 22.418 2 0 Median 0.56681 0.61787 NaN 1 0 Median 1.1733 1.0313 NaN 1 0 Median 0.63506 0.64978 NaN 1 0 Median 1.4361 1.1828 8.2624 2 0 Median 121840000 60663000 61176000 36300000 17745000 18555000 19199000 7988700 11210000 44067000 26766000 17301000 2998500 1294900 1703600 16661000 5767000 10894000 2612800 1101600 1511100 6953 2245 7225 35179;35180;35181;35182;35183;35184;35185;35186 35348;35349;35350;35351;35352;35353;35354;35355;35356;35357 35350 9 ELDDISQEIAQLQR DSSGSLGSGEFTGVKELDDISQEIAQLQRE KELDDISQEIAQLQREKYSLEQDIREKEEA K E L Q R E 1 1 0 2 0 3 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 14 0 1656.8319 M0R165;Q9UBC2;M0R2S2 M0R165 385 398 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 2 6.1481E-06 104.82 By MS/MS 1 1.0567 0.91691 NaN 1 Median NaN NaN NaN 0 0 Median 1.0567 0.91691 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473900 1127500 1346300 0 0 0 2473900 1127500 1346300 0 0 0 0 0 0 0 0 0 0 0 0 6954 1431 7226 35187 35358 35358 1 ELDEEESIR LDLDKQSELRALRKKELDEEESIRKKAVQF RALRKKELDEEESIRKKAVQFGTGELCDAI K E L I R K 0 1 0 1 0 0 4 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1118.5091 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 376 384 KIAA1279 KIF1-binding protein yes no 2 0.0091518 49.418 By MS/MS By matching 1 1 0.98289 0.9117 24.323 2 Median 1.0918 1.0828 NaN 1 0 Median 0.8848 0.76765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4447600 2013400 2434200 1484300 685800 798480 2963300 1327600 1635700 0 0 0 0 0 0 0 0 0 0 0 0 6955 323 7227 35188;35189 35359 35359 1 ELDENVEYEER QNQVENWSAFAPDFKELDENVEYEERESEF PDFKELDENVEYEERESEFDIEDEDKSEPE K E L E R E 0 1 1 1 0 0 5 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1423.6103 Q15291 Q15291 338 348 RBBP5 Retinoblastoma-binding protein 5 yes yes 2 0.00013836 85.377 By matching By MS/MS 1 1 1.2953 1.2133 37.524 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5063 1.582 NaN 1 0 Median 1.1139 0.93055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3487900 1539500 1948400 0 0 0 0 0 0 2185700 976130 1209600 1302100 563350 738760 0 0 0 0 0 0 6956 2939 7228 35190;35191 35360 35360 1 ELDFWQEGWR LLSVYLDATFFPCLRELDFWQEGWRLEHEN FPCLRELDFWQEGWRLEHENPSDPQTPLVF R E L W R L 0 1 0 1 0 1 2 1 0 0 1 0 0 1 0 0 0 2 0 0 0 0 10 0 1364.6149 Q5JRX3 Q5JRX3 174 183 PITRM1 Presequence protease, mitochondrial yes yes 2 0.0074197 47.823 By MS/MS By matching By matching 1 1 1 1.1114 1.1238 28.014 3 Median 1.1114 1.1238 NaN 1 0 Median 1.7061 1.5412 NaN 1 0 Median 0.77934 0.88151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1478900 737270 741650 822410 409870 412540 343930 147680 196250 312580 179720 132860 0 0 0 0 0 0 0 0 0 6957 3050 7229 35192;35193;35194 35361;35362 35361 2 ELDHFPLEK THHLLIQCFADHILKELDHFPLEKRSEVVI ADHILKELDHFPLEKRSEVVILFSAHSLPM K E L E K R 0 0 0 1 0 0 2 0 1 0 2 1 0 1 1 0 0 0 0 0 0 0 9 0 1126.5659 P22830;A0A499FJN5 P22830 244 252 FECH Ferrochelatase, mitochondrial yes no 2 0.0087837 66.429 By MS/MS 1 0.72952 0.7652 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72952 0.7652 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6423800 3623500 2800300 0 0 0 0 0 0 6423800 3623500 2800300 0 0 0 0 0 0 0 0 0 6958 2106 7230 35195 35363 35363 1 ELDIMEPK MSNVQLNSNFLALARELDIMEPKVPDDIYK NFLALARELDIMEPKVPDDIYKTHLENNRF R E L P K V 0 0 0 1 0 0 2 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 8 0 973.47903 Q13200 Q13200 336 343 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.012627 54.611 By MS/MS By MS/MS 1 3 1.0885 1.0022 20.975 4 Median 1.104 1.0701 NaN 1 0 Median 1.0733 0.9386 23.493 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14796000 7298200 7497800 8908600 4486100 4422500 5887300 2812100 3075300 0 0 0 0 0 0 0 0 0 0 0 0 6959 2796 7231 35196;35197;35198;35199 35364;35365;35366 35364 3 ELDLHGLYTR SRGSPFKKIPAVGGKELDLHGLYTRVTTLG AVGGKELDLHGLYTRVTTLGGFAKVSEKNQ K E L T R V 0 1 0 1 0 0 1 1 1 0 3 0 0 0 0 0 1 0 1 0 0 0 10 0 1215.6248 Q68CP9;F8WCU9 Q68CP9 44 53 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.003294 41.704 By MS/MS 1 0.84678 0.93635 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84678 0.93635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007000 2478800 1528200 0 0 0 0 0 0 4007000 2478800 1528200 0 0 0 0 0 0 0 0 0 6960 3122 7232 35200 35367 35367 1 ELDLVSHHVR QKADIEEIKSGRLSKELDLVSHHVRTKLDE GRLSKELDLVSHHVRTKLDELKRQEVGRLR K E L V R T 0 1 0 1 0 0 1 0 2 0 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1203.636 E9PKG6;P80303;Q2L696;E9PLR0;E9PLE9;A0A2R8Y6G7 E9PKG6 91 100 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 yes no 3 0.0013517 51.276 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3492 1.1703 16.545 4 Median 1.02 0.99364 NaN 1 0 Median 1.4859 1.2548 NaN 1 0 Median 1.4525 1.4511 NaN 1 1 Median 1.2532 1.0914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15785000 6991200 8793300 6091200 2994500 3096700 6690100 2679200 4011000 1459700 554980 904680 1543500 762590 780950 0 0 0 0 0 0 6961 948 7233 35201;35202;35203;35204 35368;35369;35370;35371 35371 4 ELDLYLAYFVR PVLCVQPHHIGVAVKELDLYLAYFVRERDA VAVKELDLYLAYFVRERDAEQSGSPRTGMG K E L V R E 1 1 0 1 0 0 1 0 0 0 3 0 0 1 0 0 0 0 2 1 0 0 11 0 1400.734 A0A286YEX4;P08651 A0A286YEX4 197 207 NFIC Nuclear factor 1 C-type yes no 2 0.028804 31.934 By matching By matching By MS/MS 1 1 2 1.1631 0.97957 30.647 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78101 0.82296 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.585 1.6015 NaN 1 0 Median 1.1631 0.97957 18.703 2 0 Median 9696800 4857400 4839400 0 0 0 0 0 0 1688700 977530 711210 0 0 0 1285400 476990 808370 6722700 3402900 3319800 6962 350 7234 35205;35206;35207;35208 35372 35372 1 ELDMEPYTVAGVAK RECAIKFNDYFEFPRELDMEPYTVAGVAKL RELDMEPYTVAGVAKLEGDNVNPESQLIQQ R E L A K L 2 0 0 1 0 0 2 1 0 0 1 1 1 0 1 0 1 0 1 2 0 0 14 0 1521.7385 Q93008 Q93008 1821 1834 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 5.954E-05 91.549 By MS/MS 2 0.91826 0.88359 0.48275 2 Median 0.91826 0.88359 0.48275 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42007000 21381000 20626000 42007000 21381000 20626000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6963 3573 7235 35209;35210 35373;35374 35373 2 ELDPTNMTYITNQAAVYFEK KKDFDTALKHYDKAKELDPTNMTYITNQAA NMTYITNQAAVYFEKGDYNKCRELCEKAIE K E L E K G 2 0 2 1 0 1 2 0 0 1 1 1 1 1 1 0 3 0 2 1 0 0 20 0 2347.1042 P31948 P31948 253 272 STIP1 Stress-induced-phosphoprotein 1 yes yes 2;3 1.2851E-05 48.112 By MS/MS By MS/MS By matching 2 2 1 0.99193 0.90807 4.6803 5 Median 0.99172 0.94631 1.6794 2 0 Median 1.0161 0.88169 4.1701 2 0 Median 0.86952 0.87183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15076000 7639300 7436800 12117000 6085300 6031400 2290800 1169900 1120900 668700 384160 284540 0 0 0 0 0 0 0 0 0 6964 2212 7236 35211;35212;35213;35214;35215 35375;35376;35377 35375 3 ELDRNELFEK FNLETEWKNNYPRLRELDRNELFEKAKNEI YPRLRELDRNELFEKAKNEILDEVISLSQV R E L E K A 0 1 1 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 10 1 1291.6408 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5 A0A2R8Y3X5 481 490 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.055275 17.221 By MS/MS 1 1.3725 1.4017 NaN 1 Median 1.3725 1.4017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1895500 833190 1062300 1895500 833190 1062300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6965 357 7237 35216 35378 35378 1 ELDSGLAESVSTLIWAAPR CDLLLARFGLIQSMKELDSGLAESVSTLIW GLAESVSTLIWAAPRLQSEVAELKIVADQL K E L P R L 3 1 0 1 0 0 2 1 0 1 3 0 0 0 1 3 1 1 0 1 0 0 19 0 2014.0371 P53990;H3BMU1;H3BUI0;H3BQF7;J3KR23;F5GXM3 P53990 91 109 IST1 IST1 homolog yes no 2;3 1.0601E-09 71.241 By MS/MS By matching 5 1 0.8707 0.88039 13.417 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83276 0.82055 14.136 5 2 Median 1.0758 0.94459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10310000 5429800 4880100 0 0 0 0 0 0 10199000 5378900 4819700 111360 50905 60459 0 0 0 0 0 0 6966 2477 7238 35217;35218;35219;35220;35221;35222 35379;35380;35381;35382;35383 35382 5 ELDSITPEVLPGWK QYHELVVQARDDFKRELDSITPEVLPGWKG RELDSITPEVLPGWKGMSVSDLADKLSTDD R E L W K G 0 0 0 1 0 0 2 1 0 1 2 1 0 0 2 1 1 1 0 1 0 0 14 0 1582.8243 Q16891;B9A067;C9J406;H7C463 Q16891 372 385 IMMT MICOS complex subunit MIC60 yes no 2 0.00086863 57.492 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 0.97542 0.9229 20.383 6 Median 0.73038 0.68234 15.025 2 0 Median 1.1918 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0158 0.88337 NaN 1 0 Median 0.93664 0.9642 NaN 1 0 Median 1.1781 1.016 NaN 1 0 Median 29868000 14583000 15285000 16680000 8789400 7890300 10341000 4442600 5898900 0 0 0 911950 422570 489380 1782500 853680 928860 152390 74597 77790 6967 3001 7239 35223;35224;35225;35226;35227;35228 35384;35385;35386;35387;35388;35389 35385 6 ELDSQLNEPR SLTWTLCEALWGHLKELDSQLNEPREYIQI WGHLKELDSQLNEPREYIQILERRRAFSRW K E L P R E 0 1 1 1 0 1 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1199.5782 P52948;A0A3B3ITD8;H7C3P6 P52948 1285 1294 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00063775 112.84 By matching By MS/MS By MS/MS 1 1 1 0.86544 0.77342 7.0748 3 Median NaN NaN NaN 0 0 Median 0.86544 0.74249 NaN 1 0 Median 0.79572 0.85214 NaN 1 0 Median 0.90761 0.77342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7325900 3529700 3796200 0 0 0 1948500 1165000 783430 3979300 1716400 2262900 1398100 648280 749840 0 0 0 0 0 0 6968 2462 7240 35229;35230;35231 35390;35391;35392;35393 35390 4 ELDTVTLEDIKEHVK ADGKTAAAAAEHSQRELDTVTLEDIKEHVK ELDTVTLEDIKEHVKQLEKAVSGKEPRFVL R E L V K Q 0 0 0 2 0 0 3 0 1 1 2 2 0 0 0 0 2 0 0 2 0 0 15 1 1767.9254 O43242 O43242 66 80 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 3;4 8.5942E-07 91.812 By MS/MS By matching By matching By matching 5 2 2 1 1.1449 1.0745 19.557 10 Median 1.1128 1.0389 16.433 5 0 Median 1.1419 1.0738 13.248 2 0 Median 1.3317 1.3968 16.754 2 0 Median 0.84103 0.86353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60367000 27897000 32470000 49495000 22883000 26612000 3607000 1767400 1839600 7109200 3159800 3949400 155250 86613 68641 0 0 0 0 0 0 6969 1560 7241 35232;35233;35234;35235;35236;35237;35238;35239;35240;35241 35394;35395;35396;35397;35398 35396 5 ELEAASAPEER EKDKADDDVFEKKQKELEAASAPEERTRLH KKQKELEAASAPEERTRLHDELEEAKDKAR K E L E R T 3 1 0 0 0 0 4 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 11 0 1200.5622 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1050 1060 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.029697 51.436 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6970 300 7242 35242 35399 35399 1 ELEAELEDER EQNEEKKRLLIKQVRELEAELEDERKQRAL IKQVRELEAELEDERKQRALAVASKKKMEI R E L E R K 1 1 0 1 0 0 5 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1231.5568 P35580 P35580 1600 1609 MYH10 Myosin-10 yes yes 2 0.00033784 108.98 By MS/MS By MS/MS 1 1 1.0249 0.91694 18.445 2 Median 0.85741 0.80481 NaN 1 0 Median 1.225 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19797000 9467500 10330000 10980000 5536300 5443400 8817500 3931200 4886200 0 0 0 0 0 0 0 0 0 0 0 0 6971 2245 7243 35243;35244 35400;35401;35402 35401 3 ELEAELEDERK EQNEEKKRLLIKQVRELEAELEDERKQRAL KQVRELEAELEDERKQRALAVASKKKMEID R E L R K Q 1 1 0 1 0 0 5 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1359.6518 P35580 P35580 1600 1610 MYH10 Myosin-10 yes yes 2;3 5.1289E-19 161.27 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.0724 1.0437 24.26 6 Median 0.85056 0.85688 4.9326 2 1 Median 1.3072 1.2326 0.57563 2 1 Median 0.67402 0.80771 NaN 1 0 Median 1.4665 1.4158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33131000 16125000 17006000 14083000 7891600 6191800 13789000 5445400 8343300 4619600 2546600 2073000 639610 241220 398380 0 0 0 0 0 0 6972 2245 7244 35245;35246;35247;35248;35249;35250;35251;35252 35403;35404;35405;35406;35407;35408;35409;35410;35411;35412 35411 10 ELEAELEDERKQR EQNEEKKRLLIKQVRELEAELEDERKQRAL VRELEAELEDERKQRALAVASKKKMEIDLK R E L Q R A 1 2 0 1 0 1 5 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1643.8115 P35580 P35580 1600 1612 MYH10 Myosin-10 yes yes 3;4 0.00059327 91.961 By MS/MS 2 1.0535 1.0749 11.89 2 Median 1.0535 1.0749 11.89 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10808000 5066600 5741500 10808000 5066600 5741500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6973 2245 7245 35253;35254 35413;35414 35414 2 ELEAENYHDIK AAYEERVQAVVAVARELEAENYHDIKRITA AVARELEAENYHDIKRITARKDNVIRLWEY R E L I K R 1 0 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1359.6307 Q01082;A0A087WUZ3;F8W6C1 Q01082 487 497 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00094301 78.098 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.90327 0.87362 21.271 6 Median NaN NaN NaN 0 0 Median 0.95813 0.8402 30.319 3 1 Median 0.85156 0.94812 NaN 1 0 Median 0.99932 0.90838 NaN 1 0 Median 0.75668 0.79686 NaN 1 0 Median NaN NaN NaN 0 0 Median 22047000 11582000 10465000 0 0 0 13364000 7070900 6293400 5840700 2953700 2887000 1388900 719600 669260 1452800 837920 614900 0 0 0 6974 2681 7246 35255;35256;35257;35258;35259;35260 35415;35416;35417;35418;35419 35419 5 ELEAENYHDIKR AAYEERVQAVVAVARELEAENYHDIKRITA VARELEAENYHDIKRITARKDNVIRLWEYL R E L K R I 1 1 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1515.7318 Q01082;A0A087WUZ3;F8W6C1 Q01082 487 498 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 9.207E-07 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 3 2 1.162 1.0795 22.306 15 Median 1.3266 1.343 1.5098 2 1 Median 1.192 1.0975 17.294 3 0 Median 0.7613 0.89021 21.912 2 0 Median 1.112 1.0597 4.109 3 0 Median 1.1736 1.2167 42.669 3 0 Median 1.0972 0.96502 15.856 2 0 Median 121640000 57867000 63770000 7023400 2830000 4193400 32076000 14349000 17727000 50030000 26048000 23982000 17489000 8250700 9238600 8674000 3762900 4911100 6344000 2626300 3717700 6975 2681 7247 35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274;35275;35276;35277 35420;35421;35422;35423;35424;35425;35426;35427;35428;35429;35430;35431;35432;35433;35434;35435;35436;35437;35438;35439;35440 35426 21 ELEANVLATAPDK QRLIEQEEYLNVQVKELEANVLATAPDKKK VKELEANVLATAPDKKKQKLLEENVSAFKT K E L D K K 3 0 1 1 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1369.7089 Q9NTJ3;E9PD53 Q9NTJ3 841 853 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 8.3164E-07 125.74 By MS/MS By MS/MS By MS/MS 1 1 1 0.89951 0.79711 3.9631 3 Median 0.80113 0.77272 NaN 1 0 Median 0.89951 0.79711 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92974 0.83598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33656000 17155000 16501000 15703000 8161400 7541400 9560900 4875600 4685300 0 0 0 8392400 4118400 4274000 0 0 0 0 0 0 6976 4108 7248 35278;35279;35280 35441;35442;35443;35444;35445 35445 5 ELEANVLATAPDKK QRLIEQEEYLNVQVKELEANVLATAPDKKK KELEANVLATAPDKKKQKLLEENVSAFKTE K E L K K K 3 0 1 1 0 0 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 14 1 1497.8039 Q9NTJ3;E9PD53 Q9NTJ3 841 854 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0004618 45.825 By MS/MS 1 0.92504 0.86757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92504 0.86757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2160500 1024100 1136400 0 0 0 0 0 0 0 0 0 2160500 1024100 1136400 0 0 0 0 0 0 6977 4108 7249 35281 35446 35446 1 ELEANVLATAPDKKK QRLIEQEEYLNVQVKELEANVLATAPDKKK ELEANVLATAPDKKKQKLLEENVSAFKTEY K E L K K Q 3 0 1 1 0 0 2 0 0 0 2 3 0 0 1 0 1 0 0 1 0 0 15 2 1625.8988 Q9NTJ3;E9PD53 Q9NTJ3 841 855 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0012577 36.638 By MS/MS By matching 1 1 0.69859 0.80129 32.374 2 Median 0.92013 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53039 0.63734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7075800 3565400 3510400 5169100 2491700 2677300 0 0 0 1906700 1073700 833060 0 0 0 0 0 0 0 0 0 6978 4108 7250 35282;35283 35447;35448 35447 2 ELEAQEAR TNALLVVKHRDMNEKELEAQEARKAQLENH HRDMNEKELEAQEARKAQLENHEPEEEEEE K E L A R K 2 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 8 0 944.45632 Q8N7H5;M0QYC7 Q8N7H5 360 367 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0080329 64.567 By matching By MS/MS By matching By matching 1 2 2 1 1.1191 1.0641 13.734 6 Median 0.89081 0.88677 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0055 1.0882 11.877 2 0 Median 1.238 1.0641 8.4839 2 0 Median 1.2417 1.2977 NaN 1 0 Median NaN NaN NaN 0 0 Median 6334900 2940300 3394600 168700 90605 78095 0 0 0 4375500 2067100 2308400 589930 265370 324560 1200800 517250 683560 0 0 0 6979 3393 7251 35284;35285;35286;35287;35288;35289 35449;35450;35451 35450 3 ELEDATETADAMNR EEAQRANASRRKLQRELEDATETADAMNRE RELEDATETADAMNREVSSLKNKLRRGDLP R E L N R E 3 1 1 2 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 14 0 1564.6675 P35579 P35579 1899 1912 MYH9 Myosin-9 yes yes 2;3 3.0672E-68 243.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 3 1 2 1 1.0627 1.0185 14.858 18 Median 1.1136 1.0627 6.367 5 0 Median 1.0702 0.91008 15.596 6 0 Median 0.96742 1.0705 11.044 3 0 Median 1.1274 0.99244 NaN 1 0 Median 1.1203 1.1676 9.3998 2 0 Median 0.87696 0.71539 NaN 1 0 Median 391340000 180450000 210890000 228800000 103910000 124890000 99745000 46917000 52828000 43820000 21533000 22287000 4838600 2278200 2560400 13207000 5391200 7816200 922360 411900 510460 6980 2244 7252;7253 35290;35291;35292;35293;35294;35295;35296;35297;35298;35299;35300;35301;35302;35303;35304;35305;35306;35307 35452;35453;35454;35455;35456;35457;35458;35459;35460;35461;35462;35463;35464;35465;35466;35467;35468;35469;35470;35471;35472;35473;35474;35475;35476 35465 984 25 ELEDLEGYQNTIVAGSLITK YYNSQTKESRWAKPKELEDLEGYQNTIVAG EGYQNTIVAGSLITKSNLHAMIKAEESSKQ K E L T K S 1 0 1 1 0 1 3 2 0 2 3 1 0 0 0 1 2 0 1 1 0 0 20 0 2192.1212 O75400;A0A3F2YNY6;F5H578;H7C2N3 O75400 214 233 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 2.7285E-07 59.898 By MS/MS By matching 1 1 1.0342 0.99216 8.2331 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9778 1.0516 NaN 1 0 Median 1.0937 0.93605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7177200 3518300 3658900 0 0 0 0 0 0 6859900 3384600 3475300 317270 133700 183570 0 0 0 0 0 0 6981 1670 7254 35308;35309 35477;35478 35478 2 ELEDLEVDGQK HAKEILHCLKNKYFKELEDLEVDGQKVEVP KYFKELEDLEVDGQKVEVPQPLSWYPEELA K E L Q K V 0 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1273.6038 Q08J23;A0A140T9Y7 Q08J23 101 111 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 0.00015141 115.71 By MS/MS 2 1.3897 1.3249 30.437 2 Median NaN NaN NaN 0 0 Median 1.3897 1.3249 30.437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5581600 2604400 2977200 0 0 0 5581600 2604400 2977200 0 0 0 0 0 0 0 0 0 0 0 0 6982 2745 7255 35310;35311 35479;35480 35480 2 ELEDSLQQLLR FELEKMESICQARAKELEDSLQQLLRLQDD ARAKELEDSLQQLLRLQDDHRNLRKWLTNQ K E L L R L 0 1 0 1 0 2 2 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 11 0 1342.7092 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1937 1947 SYNE2 Nesprin-2 yes no 2 0.00042523 69.954 By MS/MS 1 0.81222 0.91254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81222 0.91254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1449500 707850 741650 0 0 0 0 0 0 1449500 707850 741650 0 0 0 0 0 0 0 0 0 6983 3521 7256 35312 35481;35482 35481 2 ELEDYIDNLLVR LKQKETISKKEFQVRELEDYIDNLLVRVME QVRELEDYIDNLLVRVMEETPNILRIPTQV R E L V R V 0 1 1 2 0 0 2 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1490.7617 E7EX40;Q6WKZ4;Q7L804 E7EX40 468 479 RAB11FIP1;RAB11FIP2 Rab11 family-interacting protein 1;Rab11 family-interacting protein 2 yes no 2 6.3504E-06 98.249 By MS/MS 3 1.0164 0.88012 12.737 3 Median NaN NaN NaN 0 0 Median 1.0164 0.88012 12.737 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6031500 2964200 3067300 0 0 0 6031500 2964200 3067300 0 0 0 0 0 0 0 0 0 0 0 0 6984 905 7257 35313;35314;35315 35483;35484 35483 2 ELEEAMAGER SGLQKQASAAEDRIRELEEAMAGERDKFRK EDRIRELEEAMAGERDKFRKMLDAKEQEMT R E L E R D 2 1 0 0 0 0 4 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1133.5023 Q03252 Q03252 337 346 LMNB2 Lamin-B2 yes yes 2 0.00099442 109.71 By MS/MS By MS/MS By MS/MS 1 2 4 0.79254 0.7976 47.732 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98852 1.0513 NaN 1 0 Median 0.61491 0.51644 90.013 2 1 Median 0.66688 0.66925 27.078 4 2 Median NaN NaN NaN 0 0 Median 63502000 48935000 14567000 0 0 0 0 0 0 2010600 1043700 966940 26635000 22995000 3639800 34857000 24897000 9960500 0 0 0 6985 2709 7258;7259 35316;35317;35318;35319;35320;35321;35322 35485;35486;35487;35488;35489;35490;35491;35492;35493 35492 1394 9 ELEEAMAGERDK SGLQKQASAAEDRIRELEEAMAGERDKFRK RIRELEEAMAGERDKFRKMLDAKEQEMTEM R E L D K F 2 1 0 1 0 0 4 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 12 1 1376.6242 Q03252 Q03252 337 348 LMNB2 Lamin-B2 yes yes 2 0.00095784 85.533 By MS/MS 2 1.1209 1.198 5.6014 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1209 1.198 5.6014 2 0 Median NaN NaN NaN 0 0 Median 8281300 4448900 3832500 0 0 0 0 0 0 0 0 0 0 0 0 8281300 4448900 3832500 0 0 0 6986 2709 7260 35323;35324 35494;35495;35496;35497 35494 4 ELEEAVTSALQQETEK EQYEALQEETRVAQKELEEAVTSALQQETE LEEAVTSALQQETEKSKAAKELAENKKKID K E L E K S 2 0 0 0 0 2 5 0 0 0 2 1 0 0 0 1 2 0 0 1 0 0 16 0 1803.8738 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3718 3733 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0071575 30.55 By MS/MS By matching 1 2 0.97296 0.83985 18.233 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6601 0.71908 NaN 1 0 Median 1.0409 0.93197 14.717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2976600 1630800 1345800 0 0 0 0 0 0 2632500 1495000 1137500 344070 135810 208250 0 0 0 0 0 0 6987 1220 7261 35325;35326;35327 35498 35498 1 ELEEEITLR QKCKSVNTRLEKTAKELEEEITLRKSVESA LEKTAKELEEEITLRKSVESALRQLEREKA K E L L R K 0 1 0 0 0 0 4 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1130.5819 O75116;E9PF63 O75116 483 491 ROCK2 Rho-associated protein kinase 2 yes no 2 0.046695 49.418 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6988 1644 7262 35328 35499 35499 1 ELEEEITLRK QKCKSVNTRLEKTAKELEEEITLRKSVESA EKTAKELEEEITLRKSVESALRQLEREKAL K E L R K S 0 1 0 0 0 0 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1258.6769 O75116;E9PF63 O75116 483 492 ROCK2 Rho-associated protein kinase 2 yes no 2;3 0.0029763 68.735 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1697 1.2242 54.226 5 Median 1.2004 1.2242 NaN 1 0 Median 0.66282 0.62848 75.041 2 1 Median 1.1697 1.3308 NaN 1 0 Median 1.3388 1.2924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16892000 11320000 5572900 2356300 1062700 1293600 11493000 8933600 2559600 2400900 1012300 1388600 642010 310970 331040 0 0 0 0 0 0 6989 1644 7263 35329;35330;35331;35332;35333 35500;35501;35502;35503;35504 35500 5 ELEEETNAFNR RVHQEEKRKVEEKRRELEEETNAFNRRKAA EKRRELEEETNAFNRRKAAVEALQSQALHA R E L N R R 1 1 2 0 0 0 4 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1350.6052 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 387 397 SEPT8 Septin-8 yes no 2 6.3225E-15 187 By MS/MS By MS/MS 2 2 0.80062 0.80297 15.113 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80062 0.80297 0.25987 2 0 Median 0.90362 0.77568 25.946 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62734000 33279000 29455000 0 0 0 0 0 0 36279000 20559000 15720000 26454000 12719000 13735000 0 0 0 0 0 0 6990 118 7264 35334;35335;35336;35337 35505;35506;35507;35508;35509;35510;35511 35511 7 ELEEEVNNFQK RTHQEEKKKVEDKKKELEEEVNNFQKKKAA DKKKELEEEVNNFQKKKAAAQLLQSQAQQS K E L Q K K 0 0 2 0 0 1 4 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 11 0 1377.6412 D6RGI3;D6RER5;Q9NVA2;H0Y961;H0Y9G8 D6RGI3 387 397 SEPT11 Septin-11 yes no 2 1.2478E-10 180.45 By matching By MS/MS By MS/MS 1 2 2 1.2593 1.0787 17.078 5 Median NaN NaN NaN 0 0 Median 1.3629 1.1886 NaN 1 0 Median 0.9204 0.88802 18.623 2 0 Median 1.2758 1.1215 5.5088 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158980000 71958000 87025000 0 0 0 1212200 499250 712940 90299000 42530000 47769000 67471000 28928000 38543000 0 0 0 0 0 0 6991 822 7265 35338;35339;35340;35341;35342 35512;35513;35514;35515;35516;35517;35518 35516 7 ELEEEWVK ALRPPLQNINSVQLKELEEEWVKLPTSAPR INSVQLKELEEEWVKLPTSAPRPTRFLRSQ K E L V K L 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 1060.5077 Q14008 Q14008 213 220 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0037995 85.265 By MS/MS By MS/MS By matching 2 2 2 1.0718 0.96647 23.143 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.066 1.1678 30.335 2 0 Median 1.0278 0.89205 14.903 2 0 Median NaN NaN NaN 0 0 Median 1.2501 1.0658 28.018 2 0 Median 20187000 9366400 10821000 0 0 0 0 0 0 12045000 5771100 6274100 7631500 3354100 4277400 0 0 0 510820 241260 269560 6992 2850 7266 35343;35344;35345;35346;35347;35348 35519;35520;35521 35521 3 ELEEIVQPIISK SHQDADIEDFKAKKKELEEIVQPIISKLYG KKKELEEIVQPIISKLYGSAGPPPTGEEDT K E L S K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1396.7813 P11021 P11021 622 633 HSPA5 78 kDa glucose-regulated protein yes yes 2 5.2929E-06 99.788 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 1.0939 0.9674 16.697 8 Median 0.95371 0.86608 4.6654 2 0 Median 1.0939 0.93419 0.69528 2 0 Median 0.99028 0.99687 NaN 1 0 Median 1.2525 1.0777 0.45915 2 0 Median 1.3908 1.4382 NaN 1 0 Median NaN NaN NaN 0 0 Median 111660000 53345000 58312000 51901000 25373000 26528000 37594000 17740000 19855000 14753000 7093900 7659300 4344100 1844200 2499800 3065100 1294200 1770900 0 0 0 6993 1948 7267 35349;35350;35351;35352;35353;35354;35355;35356 35522;35523;35524;35525;35526;35527;35528;35529;35530;35531 35527 10 ELEELRDK ALLNEKQAASPLEPKELEELRDKNESLTMR ASPLEPKELEELRDKNESLTMRLHETLKQC K E L D K N 0 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1030.5295 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 277 284 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.056076 56.122 By matching By matching By MS/MS 1 1 2 1.1109 1.1581 15.579 4 Median 1.1657 1.1849 NaN 1 0 Median 1.2328 1.1319 NaN 1 0 Median 0.93798 1.0545 25.096 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7221100 3382900 3838200 1020100 383840 636250 2126600 825360 1301300 4074400 2173700 1900700 0 0 0 0 0 0 0 0 0 6994 2905;77 7268 35357;35358;35359;35360 35532 35532 1 ELEELRDKNESLTMR ALLNEKQAASPLEPKELEELRDKNESLTMR ELEELRDKNESLTMRLHETLKQCQDLKTEK K E L M R L 0 2 1 1 0 0 4 0 0 0 3 1 1 0 0 1 1 0 0 0 0 0 15 2 1861.9204 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 277 291 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3;4 1.7929E-10 154.72 By MS/MS By matching By MS/MS By matching 5 2 5 1 0.81859 0.93763 15.749 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83234 0.99639 11.57 5 0 Median 1.022 1.0237 2.3878 2 0 Median 0.80113 0.9171 16.493 5 0 Median 0.79287 0.68727 NaN 1 0 Median 257860000 135330000 122520000 0 0 0 0 0 0 215990000 112660000 103330000 4620600 2236100 2384500 36882000 20246000 16637000 362080 189200 172870 6995 2905;77 7269 35361;35362;35363;35364;35365;35366;35367;35368;35369;35370;35371;35372;35373 35533;35534;35535;35536;35537;35538;35539;35540;35541;35542;35543;35544 35538 11 ELEELRQTVK QELAKLRGLEAAQIKELEELRQTVKQLKEQ AAQIKELEELRQTVKQLKEQLAKKEKEHAS K E L V K Q 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1243.6772 A0A087WY61;Q14980 Q14980 1079 1088 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 0.00023328 136.57 By MS/MS By MS/MS By MS/MS 2 1 1 0.91723 0.96149 11.414 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89304 1.0706 15.117 2 1 Median NaN NaN NaN 0 0 Median 0.84654 0.96093 NaN 1 0 Median 1.0455 0.92875 NaN 1 0 Median 31897000 16669000 15228000 0 0 0 0 0 0 19173000 10054000 9119200 0 0 0 10822000 5602500 5220000 1901200 1012200 888980 6996 2905;77 7270 35374;35375;35376;35377 35545;35546;35547;35548;35549;35550 35545 6 ELEEVMK AIVKPPEMTPQAAAKELEEVMKRVREAQSF MTPQAAAKELEEVMKRVREAQSFISAAIEP K E L M K R 0 0 0 0 0 0 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 7 0 876.42627 Q8WXA9;H0YC47 Q8WXA9 158 164 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes no 2 0.016985 67.035 By MS/MS 1 0.87887 0.93363 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87887 0.93363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4411600 2236700 2174900 0 0 0 0 0 0 4411600 2236700 2174900 0 0 0 0 0 0 0 0 0 6997 3516 7271 35378 35551;35552 35551 2 ELEEYLEK ITEIELRKRVKLEGKELEEYLEKEKLKKEA RVKLEGKELEEYLEKEKLKKEAAKKLEQSK K E L E K E 0 0 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 1051.5074 Q9P2I0 Q9P2I0 391 398 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.010468 58.815 By matching By MS/MS By MS/MS 3 1 1 0.90051 0.96175 16.255 5 Median NaN NaN NaN 0 0 Median 1.2199 1.0586 20.508 3 0 Plateau 0.87375 0.96175 NaN 1 0 Median 1.1449 0.99311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13584000 6865500 6718300 0 0 0 5570400 2785000 2785300 5838700 3066100 2772600 2174800 1014400 1160400 0 0 0 0 0 0 6998 4223 7272 35379;35380;35381;35382;35383 35553;35554;35555 35553 3 ELEEYLEKEK ITEIELRKRVKLEGKELEEYLEKEKLKKEA KLEGKELEEYLEKEKLKKEAAKKLEQSKEA K E L E K L 0 0 0 0 0 0 5 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 10 1 1308.6449 Q9P2I0 Q9P2I0 391 400 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.0018484 88.136 By matching By MS/MS 1 1 0.75632 0.74617 8.6005 2 Median NaN NaN NaN 0 0 Median 0.8244 0.70214 NaN 1 0 Median 0.69385 0.79296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35071000 21944000 13127000 0 0 0 29322000 18756000 10566000 5748300 3187600 2560700 0 0 0 0 0 0 0 0 0 6999 4223 7273 35384;35385 35556 35556 1 ELEFYLR PGQCGRADGYVLEGKELEFYLRKIKARKGK DGYVLEGKELEFYLRKIKARKGK_______ K E L L R K 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 968.49673 Q5JR95;P62241 Q5JR95 174 180 RPS8 40S ribosomal protein S8 yes no 2 0.0076235 88.591 By MS/MS By matching By MS/MS By MS/MS By matching 4 2 1 3 1 1.1425 1.1063 9.0231 11 Median 1.1236 1.0881 5.5613 4 0 Median 1.3122 1.1247 2.3273 2 0 Median 1.2684 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1927 1.1991 13.704 3 0 Plateau 1.2924 0.96521 NaN 1 0 Median 111140000 50480000 60658000 76446000 36024000 40422000 8046900 2212600 5834300 8623800 4033200 4590600 0 0 0 12770000 5939500 6830000 5252200 2271200 2981100 7000 2573 7274 35386;35387;35388;35389;35390;35391;35392;35393;35394;35395;35396 35557;35558;35559;35560;35561;35562;35563;35564;35565 35560 9 ELEFYLRK PGQCGRADGYVLEGKELEFYLRKIKARKGK GYVLEGKELEFYLRKIKARKGK________ K E L R K I 0 1 0 0 0 0 2 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 1 1096.5917 Q5JR95;P62241 Q5JR95 174 181 RPS8 40S ribosomal protein S8 yes no 2 0.005341 83.614 By MS/MS 1 1.2368 1.1475 NaN 1 Median NaN NaN NaN 0 0 Median 1.2368 1.1475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5540600 2502300 3038300 0 0 0 5540600 2502300 3038300 0 0 0 0 0 0 0 0 0 0 0 0 7001 2573 7275 35397 35566 35566 1 ELEGLQQLLQNVK SLKQQLDLTEQQGRKELEGLQQLLQNVKSE RKELEGLQQLLQNVKSELEMAQEDLSMTQK K E L V K S 0 0 1 0 0 3 2 1 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1510.8355 Q08378;A0A087WV43 Q08378 1317 1329 GOLGA3 Golgin subfamily A member 3 yes no 2 0.00018417 93.551 By MS/MS 1 1.1658 1.0344 NaN 1 Median NaN NaN NaN 0 0 Median 1.1658 1.0344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4219600 1961500 2258000 0 0 0 4219600 1961500 2258000 0 0 0 0 0 0 0 0 0 0 0 0 7002 2738 7276 35398 35567 35567 1 ELEHMVR GICVLLGISLEDTQKELEHMVRKILNLRVF ISLEDTQKELEHMVRKILNLRVFEDESGKH K E L V R K 0 1 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 912.44874 Q8TEA8;A0A2R8Y6X2;A0A2R8YCT7;A0A087WZV9 Q8TEA8 41 47 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1;D-tyrosyl-tRNA(Tyr) deacylase yes no 2 0.030618 64.776 By MS/MS 1 1.0963 1.0342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0963 1.0342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2144300 1069500 1074800 0 0 0 0 0 0 2144300 1069500 1074800 0 0 0 0 0 0 0 0 0 7003 3476 7277 35399 35568 35568 1 ELEIAQDR EKLNNQLKALTEKNKELEIAQDRNIAIQSQ ALTEKNKELEIAQDRNIAIQSQFTRTKEEL K E L D R N 1 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 P12270 P12270 98 105 TPR Nucleoprotein TPR yes yes 2 0.010468 58.815 By MS/MS 2 0.59544 0.52027 17.158 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59544 0.52027 17.158 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2688400 1552000 1136400 0 0 0 0 0 0 0 0 0 2688400 1552000 1136400 0 0 0 0 0 0 7004 1978 7278 35400;35401 35569;35570 35569 2 ELEIEER RVKKLEEVERKKRQRELEIEERERRREEER VERKKRQRELEIEERERRREEERRLGDSSL R E L E R E 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 916.45018 Q14152 Q14152 862 868 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00093529 134.66 By matching By MS/MS By matching 1 1 1 1.1171 0.9535 28.232 3 Median 0.79777 0.76134 NaN 1 0 Median 1.1171 0.9535 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.512 1.3342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13380000 6801000 6579200 5108500 2719200 2389300 7293400 3643900 3649500 0 0 0 978370 437960 540410 0 0 0 0 0 0 7005 2860 7279 35402;35403;35404 35571;35572 35572 2 ELEIEERER RVKKLEEVERKKRQRELEIEERERRREEER RKKRQRELEIEERERRREEERRLGDSSLSR R E L E R R 0 2 0 0 0 0 5 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 1 1201.5939 Q14152 Q14152 862 870 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0012053 62.823 By MS/MS 1 0.91103 0.97427 NaN 1 Median 0.91103 0.97427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5033900 2386500 2647400 5033900 2386500 2647400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7006 2860 7280 35405 35573;35574 35574 2 ELEIESQTEEQPTTK LHTDDPLTWDYVARRELEIESQTEEQPTTK ELEIESQTEEQPTTKQAKAVEVGRKEERCC R E L T K Q 0 0 0 0 0 2 5 0 0 1 1 1 0 0 1 1 3 0 0 0 0 0 15 0 1760.8316 Q9NYH9 Q9NYH9 281 295 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 0.00032492 64.82 By MS/MS By MS/MS 1 1 0.82891 0.75096 10.274 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93946 0.80755 NaN 1 0 Median 0.73138 0.69835 NaN 1 0 Median NaN NaN NaN 0 0 Median 3920700 1911700 2009000 0 0 0 0 0 0 0 0 0 935790 440690 495100 2985000 1471000 1513900 0 0 0 7007 4176 7281 35406;35407 35575;35576 35576 2 ELEIGQAGSQR QKLRACHTRGLDGIKELEIGQAGSQRAPSA DGIKELEIGQAGSQRAPSAKKPSTGSRYQP K E L Q R A 1 1 0 0 0 2 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1186.5942 Q15021 Q15021 1302 1312 NCAPD2 Condensin complex subunit 1 yes yes 2 0.00029355 72.643 By matching By MS/MS 1 1 0.91414 0.7834 21.361 2 Median NaN NaN NaN 0 0 Median 1.0884 0.91113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76781 0.67358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11156000 5382200 5773400 0 0 0 9492200 4469900 5022400 0 0 0 1663300 912290 751060 0 0 0 0 0 0 7008 2915 7282 35408;35409 35577;35578 35578 2 ELEKEREK CDKNMPLQHLLEQIKELEKEREKILEYKRQ HLLEQIKELEKEREKILEYKRQVQNLVNKS K E L E K I 0 1 0 0 0 0 4 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 8 2 1059.556 P15924 P15924 420 427 DSP Desmoplakin yes yes 2 0.053624 51.43 By MS/MS 1 0.77523 1.0242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77523 1.0242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48758000 27220000 21538000 0 0 0 0 0 0 48758000 27220000 21538000 0 0 0 0 0 0 0 0 0 7009 2021 7283 35410 35579 35579 1 ELELAHR KDEKSNLKEVLNAVKELELAHRYFSYLSKV KEVLNAVKELELAHRYFSYLSKVGDKMRFD K E L H R Y 1 1 0 0 0 0 2 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 866.46102 Q6PD62 Q6PD62 785 791 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.045318 42.474 By matching By matching By MS/MS 1 1 1 0.96055 0.89658 33.928 3 Median NaN NaN NaN 0 0 Median 0.63402 0.54243 NaN 1 0 Median 0.96055 1.0351 NaN 1 0 Median 1.0491 0.89658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4027600 2115500 1912100 0 0 0 2265200 1372500 892710 983900 457130 526760 778420 285830 492590 0 0 0 0 0 0 7010 3168 7284 35411;35412;35413 35580 35580 1 ELEMIGFIENNVSK KCQIIYPRQQLLTLRELEMIGFIENNVSKL RELEMIGFIENNVSKLSLLLNDISRKSEGL R E L S K L 0 0 2 0 0 0 3 1 0 2 1 1 1 1 0 1 0 0 0 1 0 0 14 0 1621.8022 Q15645 Q15645 355 368 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.0059169 53.683 By MS/MS 2 1.2378 1.056 7.733 2 Median NaN NaN NaN 0 0 Median 1.2378 1.056 7.733 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2353100 1064400 1288700 0 0 0 2353100 1064400 1288700 0 0 0 0 0 0 0 0 0 0 0 0 7011 2960 7285 35414;35415 35581;35582 35582 2 ELENANDLLSATK QMEKEMLEKIGRLEKELENANDLLSATKRK EKELENANDLLSATKRKGAILSEEELAAMS K E L T K R 2 0 2 1 0 0 2 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1416.7096 P12270 P12270 352 364 TPR Nucleoprotein TPR yes yes 2 5.1823E-08 120.06 By MS/MS 1 1.0712 1.0724 NaN 1 Median 1.0712 1.0724 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10006000 4273700 5732400 10006000 4273700 5732400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7012 1978 7286 35416 35583 35583 1 ELENANDLLSATKR QMEKEMLEKIGRLEKELENANDLLSATKRK KELENANDLLSATKRKGAILSEEELAAMSP K E L K R K 2 1 2 1 0 0 2 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 1 1572.8107 P12270 P12270 352 365 TPR Nucleoprotein TPR yes yes 3 8.9231E-06 85.42 By matching By matching By MS/MS By matching 1 1 2 1 0.99273 1.0803 28.227 5 Median 1.045 1.0803 NaN 1 0 Median 0.64687 0.60309 NaN 1 0 Median 0.87729 1.0339 15.096 2 0 Median 1.2576 1.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34819000 17029000 17791000 7457900 3376300 4081600 4664500 2320600 2344000 21972000 11011000 10961000 725180 320790 404390 0 0 0 0 0 0 7013 1978 7287 35417;35418;35419;35420;35421 35584;35585;35586 35585 3 ELEPFLLR EHGKGREYGYASLHKELEPFLLRRVKKDVE GYASLHKELEPFLLRRVKKDVEKSLPAKVE K E L L R R 0 1 0 0 0 0 2 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1015.5702 O14646 O14646 689 696 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.028842 40.103 By MS/MS 2 1.0095 1.0659 26.08 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0095 1.0659 26.08 2 0 Median NaN NaN NaN 0 0 Median 4083400 1736200 2347200 0 0 0 0 0 0 0 0 0 0 0 0 4083400 1736200 2347200 0 0 0 7014 1486 7288 35422;35423 35587 35587 1 ELEPITTSQALQIAGR FYSLIKPSINEKGERELEPITTSQALQIAG LEPITTSQALQIAGRAGRFSSRFKEGEVTT R E L G R A 2 1 0 0 0 2 2 1 0 2 2 0 0 0 1 1 2 0 0 0 0 0 16 0 1725.9261 Q8IYB8 Q8IYB8 455 470 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 6.841E-11 109.6 By MS/MS By MS/MS By matching 1 1 1 0.83156 0.84816 6.8836 3 Median 0.7925 0.75796 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83156 0.85891 NaN 1 0 Median 0.9881 0.84816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12562000 6335400 6227000 5242500 2713300 2529100 0 0 0 6436300 3236300 3200000 883600 385800 497810 0 0 0 0 0 0 7015 3342 7289 35424;35425;35426 35588;35589;35590;35591 35591 4 ELEQEEEER FEGDFWPNVLEESIKELEQEEEERKKEEST LEESIKELEQEEEERKKEESTAASETTEGS K E L E R K 0 1 0 0 0 1 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1189.5099 Q92793;Q09472 Q92793 1555 1563 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 2 0.00088636 92.439 By MS/MS By MS/MS 1 2 1.0451 0.92134 1.3463 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84469 0.94202 NaN 1 0 Median 1.0479 0.92038 0.14822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1745500 826670 918830 0 0 0 0 0 0 712610 353960 358650 1032900 472710 560180 0 0 0 0 0 0 7016 3557;2748 7290 35427;35428;35429 35592;35593;35594;35595 35595 4 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK ANTLAEKDEFEHKRKELEQVCNPIISGLYQ AGGPGPGGFGAQGPKGGSGSGPTIEEVD__ K E L P K G 2 0 1 0 1 3 2 9 0 2 2 1 0 1 4 1 0 0 1 1 0 0 31 0 3054.4869 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 599 629 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 7.8738E-15 63.901 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.67019 0.63836 108.89 4 Median 0.076051 0.076774 NaN 1 0 Median 0.66032 0.57934 NaN 1 0 Median 0.69672 0.74068 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6802 0.70339 NaN 1 1 Median NaN NaN NaN 0 0 Median 18567000 15137000 3430100 10948000 10159000 789120 845070 526490 318580 2806200 1575400 1230800 0 0 0 3967800 2876100 1091600 0 0 0 7017 278 7291 35430;35431;35432;35433 35596;35597 35597 2 ELESFLR VKENTAYFQFFSDARELESFLRNLQDSIKR FQFFSDARELESFLRNLQDSIKRKYSCDHN R E L L R N 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 7 0 892.46543 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 792 798 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.026776 52.683 By matching By MS/MS 1 1 1.2377 1.139 14.893 2 Median 1.2709 1.2655 NaN 1 0 Median 1.2054 1.0251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4704800 1788700 2916100 1644100 754400 889680 3060800 1034300 2026400 0 0 0 0 0 0 0 0 0 0 0 0 7018 1220 7292 35434;35435 35598 35598 1 ELESQISELQEDLESER EEEAAQKNMALKKIRELESQISELQEDLES ESQISELQEDLESERASRNKAEKQKRDLGE R E L E R A 0 1 0 1 0 2 6 0 0 1 3 0 0 0 0 3 0 0 0 0 0 0 17 0 2032.9437 P35579 P35579 1108 1124 MYH9 Myosin-9 yes yes 2;3 2.0336E-07 72.937 By MS/MS By MS/MS 3 3 0.98728 0.84048 84.309 6 Median 1.156 1.1226 128.77 3 1 Median 0.96378 0.81894 10.153 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37462000 18627000 18835000 9361300 4976500 4384800 28101000 13651000 14451000 0 0 0 0 0 0 0 0 0 0 0 0 7019 2244 7293 35436;35437;35438;35439;35440;35441 35599;35600;35601;35602;35603 35600 5 ELESVGIR LDATKGEVQRSLLEKELESVGIRLNKHKPN QRSLLEKELESVGIRLNKHKPNIYFKPKKG K E L I R L 0 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 901.4869 P55039;A8MZF9;J3QKW7 P55039 162 169 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.007454 66.993 By MS/MS 1 1.6702 1.4485 NaN 1 Median NaN NaN NaN 0 0 Median 1.6702 1.4485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4158700 1673600 2485000 0 0 0 4158700 1673600 2485000 0 0 0 0 0 0 0 0 0 0 0 0 7020 2492 7294 35442 35604;35605 35605 2 ELEVAEGGK RECKRKVAECQRKLKELEVAEGGKAELERL CQRKLKELEVAEGGKAELERLQAEAQQLRK K E L G K A 1 0 0 0 0 0 3 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 930.46583 Q16543;K7EKQ2;K7EQA9 Q16543 70 78 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.0057545 56.659 By MS/MS By matching 1 1 1.0643 0.98084 11.22 2 Median 1.1235 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0083 0.90603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5057300 2321300 2735900 4797600 2203600 2594000 0 0 0 0 0 0 259630 117700 141930 0 0 0 0 0 0 7021 2988 7295 35443;35444 35606;35607 35607 2 ELEVLLMCNK MLPSGFRKFLVHNVKELEVLLMCNKSYCAE VHNVKELEVLLMCNKSYCAEIAHNVSSKNR K E L N K S 0 0 1 0 1 0 2 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 10 0 1247.6254 D3YTB1;F8W727;P62910 D3YTB1 84 93 RPL32 60S ribosomal protein L32 yes no 2 0.020116 66.258 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7022 798 7296 35445 35608 35608 299 1 ELEVLSEQYSQK ALRRQYLEELQSVQRELEVLSEQYSQKCLE VQRELEVLSEQYSQKCLENAHLAQALEAER R E L Q K C 0 0 0 0 0 2 3 0 0 0 2 1 0 0 0 2 0 0 1 1 0 0 12 0 1451.7144 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;H7C3G6 A0A494BZV2 2206 2217 MPRIP Myosin phosphatase Rho-interacting protein yes no 2 1.5559E-07 123.63 By MS/MS By MS/MS 1 2 0.59985 0.60012 23.8 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55507 0.60012 NaN 1 1 Median 0.80359 0.737 29.179 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7699000 4747100 2951900 0 0 0 0 0 0 5586700 3723100 1863600 2112300 1024100 1088200 0 0 0 0 0 0 7023 453 7297 35446;35447;35448 35609;35610;35611 35609 3 ELEVMTAK TRLAEVQREAQSTARELEVMTAKYEGAKVK EAQSTARELEVMTAKYEGAKVKVLEERQRF R E L A K Y 1 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 8 0 919.46847 A0A087WY61;K4DIE0;Q14980 Q14980 1504 1511 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0035475 89.55 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.0114 1.0598 59.87 3 Median NaN NaN NaN 0 0 Median 0.44665 0.38124 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2044 1.0905 NaN 1 0 Median 1.0114 1.0598 NaN 1 0 Median NaN NaN NaN 0 0 Median 32998000 20142000 12857000 0 0 0 4150300 3240500 909850 0 0 0 1967600 917260 1050300 26880000 15984000 10896000 0 0 0 7024 2905;77 7298 35449;35450;35451;35452;35453;35454 35612;35613;35614;35615;35616;35617 35615 6 ELEVQHPAAK LEKLFVTNDAATILRELEVQHPAAKMIVMA ATILRELEVQHPAAKMIVMASHMQEQEVGD R E L A K M 2 0 0 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1120.5877 P50990;H7C4C8 P50990 75 84 CCT8 T-complex protein 1 subunit theta yes no 2 5.4393E-05 134.81 By matching By MS/MS By matching By matching 1 2 2 1 0.97714 0.89783 5.6707 6 Median 0.99919 0.96298 NaN 1 0 Median 1.0323 0.88443 2.8321 2 0 Median 0.87117 0.89127 9.9258 2 0 Median NaN NaN NaN 0 0 Median 0.80427 0.89336 NaN 1 0 Median NaN NaN NaN 0 0 Median 11401000 5583200 5818000 2570300 1250400 1319900 7026100 3392300 3633800 1689600 882480 807080 0 0 0 115260 58042 57216 0 0 0 7025 2423 7299 35455;35456;35457;35458;35459;35460 35618;35619;35620 35620 3 ELFEELDRPAASDEELTR CLPYAITIVASMTVRELFEELDRPAASDEE EELDRPAASDEELTRLKSKRARVAQMKRTW R E L T R L 2 2 0 2 0 0 5 0 0 0 3 0 0 1 1 1 1 0 0 0 0 0 18 1 2119.0069 Q8IY37;F5H3Y4 Q8IY37 811 828 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 3 2.0787E-13 101.13 By MS/MS 1 0.95198 1.1578 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95198 1.1578 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5763500 3291600 2472000 0 0 0 0 0 0 5763500 3291600 2472000 0 0 0 0 0 0 0 0 0 7026 3336 7300 35461 35621 35621 1 ELFEGVQK DAEIVRLKNYYEVHKELFEGVQKWEETWRL NYYEVHKELFEGVQKWEETWRLFLEFERKA K E L Q K W 0 0 0 0 0 1 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 948.49165 O43663;H0YL53 O43663 350 357 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.049701 34.808 By matching By MS/MS 1 1 1.2507 1.1796 39.042 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5028 1.5547 NaN 1 0 Median 1.0409 0.89507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7869900 3321600 4548300 0 0 0 0 0 0 6995300 2916300 4079000 874590 405290 469300 0 0 0 0 0 0 7027 1581 7301 35462;35463 35622 35622 1 ELFEMAR ELVQKYVGEGARMVRELFEMARTKKACLIF GEGARMVRELFEMARTKKACLIFFDEIDAI R E L A R T 1 1 0 0 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 894.42694 P35998 P35998 259 265 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.015483 71.378 By MS/MS By MS/MS 1 1 1.1905 1.0747 12.704 2 Median 1.0146 0.98233 NaN 1 0 Median 1.3968 1.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17300000 7825700 9474400 7386900 3973200 3413800 9913200 3852500 6060600 0 0 0 0 0 0 0 0 0 0 0 0 7028 2253 7302 35464;35465 35623;35624;35625 35624 3 ELFEPYGAVYQINVLR FVGQIPRSWSEKELKELFEPYGAVYQINVL LFEPYGAVYQINVLRDRSQNPPQSKGCCFV K E L L R D 1 1 1 0 0 1 2 1 0 1 2 0 0 1 1 0 0 0 2 2 0 0 16 0 1909.9938 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9;V9GY47;A0A0J9YXK1 E9PC62 65 80 CELF2 CUGBP Elav-like family member 2 yes no 2 0.00017256 62.303 By MS/MS 1 0.67574 0.70814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67574 0.70814 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2942900 1598000 1344800 0 0 0 0 0 0 2942900 1598000 1344800 0 0 0 0 0 0 0 0 0 7029 294 7303 35466 35626 35626 1 ELFESSTNNNK SLESLICESRDKFIRELFESSTNNNKDTKQ KFIRELFESSTNNNKDTKQKAGKLSFISVG R E L N K D 0 0 3 0 0 0 2 0 0 0 1 1 0 1 0 2 1 0 0 0 0 0 11 0 1281.5837 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 619 629 MYO6 Unconventional myosin-VI yes no 2 0.0067336 63.076 By MS/MS 1 1.8196 1.5761 NaN 1 Median NaN NaN NaN 0 0 Median 1.8196 1.5761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3340300 1078100 2262200 0 0 0 3340300 1078100 2262200 0 0 0 0 0 0 0 0 0 0 0 0 7030 164 7304 35467 35627 35627 1 ELFESSTNNNKDTK SLESLICESRDKFIRELFESSTNNNKDTKQ RELFESSTNNNKDTKQKAGKLSFISVGNKF R E L T K Q 0 0 3 1 0 0 2 0 0 0 1 2 0 1 0 2 2 0 0 0 0 0 14 1 1625.7533 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 619 632 MYO6 Unconventional myosin-VI yes no 3 0.017376 23.881 By matching By MS/MS By matching 1 1 1 1.5715 1.4683 35.303 3 Plateau 0.99046 1.0497 NaN 1 0 Median 1.5715 1.4683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69447 0.72493 NaN 1 0 Median NaN NaN NaN 0 0 Median 4550200 1865600 2684600 1134900 559510 575430 2573500 885890 1687600 0 0 0 0 0 0 841760 420240 421520 0 0 0 7031 164 7305 35468;35469;35470 35628 35628 1 ELFFLPLGFALK YLENGTVMLNFIYRKELFFLPLGFALKALV YRKELFFLPLGFALKALVSFSDYQIFQELI K E L L K A 1 0 0 0 0 0 1 1 0 0 4 1 0 3 1 0 0 0 0 0 0 0 12 0 1393.801 Q9H9Y6 Q9H9Y6 243 254 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.0076677 38.293 By matching By MS/MS By matching By matching 1 1 1 1 0.93458 0.93956 8.7448 4 Median 1.0318 1.0455 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84648 0.91749 NaN 1 0 Median 1.0927 0.96215 NaN 1 0 Median 0.81276 0.84849 NaN 1 0 Median NaN NaN NaN 0 0 Median 4590100 2385700 2204400 342750 153350 189390 0 0 0 3937400 2085300 1852100 110960 49243 61717 199000 97823 101180 0 0 0 7032 4004 7306 35471;35472;35473;35474 35629 35629 1 ELFGPELFR PPGTGKTSTILAAARELFGPELFRLRVLEL ILAAARELFGPELFRLRVLELNASDERGIQ R E L F R L 0 1 0 0 0 0 2 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 9 0 1106.576 P35249;C9JZI1;C9J8M3;C9JTT7;C9JXZ7 P35249 94 102 RFC4 Replication factor C subunit 4 yes no 2 0.0025948 70.919 By matching By matching By MS/MS By matching By matching By matching 1 2 2 2 1 1 1.0649 0.98584 14.13 9 Median 0.91664 0.93138 NaN 1 0 Median 0.97184 0.83131 6.5666 2 0 Median 0.99084 0.99558 12.168 2 0 Median 1.1799 0.99402 1.1683 2 0 Median 1.1398 1.1949 NaN 1 0 Median 1.3736 1.2098 NaN 1 0 Median 10871000 5298900 5572000 1454100 748770 705320 1947300 932950 1014300 5971600 2933900 3037700 314000 144970 169030 794670 376990 417680 389260 161290 227970 7033 2237 7307 35475;35476;35477;35478;35479;35480;35481;35482;35483 35630;35631;35632 35631 3 ELFPIQMEGVK LPNPGTFEECHRKCKELFPIQMEGVKLTVN RKCKELFPIQMEGVKLTVNKGLSNHFQVNH K E L V K L 0 0 0 0 0 1 2 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1289.669 O96008;K7EJ57 O96008 92 102 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.00013837 87.308 By MS/MS 1 0.97292 0.89875 NaN 1 Median 0.97292 0.89875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17567000 8669300 8897800 17567000 8669300 8897800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7034 1806 7308 35484 35633;35634;35635 35634 3 ELFQETLESLR RFLTNGPSSSPGQERELFQETLESLRVLGF GQERELFQETLESLRVLGFSHEEIISMLRM R E L L R V 0 1 0 0 0 1 3 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 11 0 1363.6983 Q7Z406 Q7Z406 343 353 MYH14 Myosin-14 no no 2 0.00011268 125.56 By MS/MS By MS/MS 1 1 1.0774 0.97873 6.8861 2 Median 1.0579 1.0276 NaN 1 0 Median 1.0972 0.93221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7024800 3274200 3750600 3711700 1805400 1906300 3313100 1468800 1844300 0 0 0 0 0 0 0 0 0 0 0 0 7035 3242 7309 35485;35486 35636;35637;35638;35639 35637 4 ELFQTPDHTEESTTDDK PKEEAQSLEDLAGFKELFQTPDHTEESTTD FQTPDHTEESTTDDKTTKIACKSPPPESMD K E L D K T 0 0 0 3 0 1 3 0 1 0 1 1 0 1 1 1 4 0 0 0 0 0 17 0 1991.8596 P46013 P46013 2081 2097 MKI67 Antigen KI-67 yes yes 3 2.0661E-05 49.993 By matching By MS/MS 2 3 0.89993 0.81276 12.439 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80388 0.88849 18.201 2 0 Median 0.89993 0.81276 8.6626 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11088000 5768800 5319400 0 0 0 0 0 0 4383000 2480000 1902900 6705200 3288800 3416500 0 0 0 0 0 0 7036 2335 7310 35487;35488;35489;35490;35491 35640;35641 35641 2 ELFQTPDHTEESTTDDKTTK PKEEAQSLEDLAGFKELFQTPDHTEESTTD PDHTEESTTDDKTTKIACKSPPPESMDTPT K E L T K I 0 0 0 3 0 1 3 0 1 0 1 2 0 1 1 1 6 0 0 0 0 0 20 1 2322.0499 P46013 P46013 2081 2100 MKI67 Antigen KI-67 yes yes 3;4 9.335E-06 44.382 By MS/MS By matching 3 1 0.82469 0.93564 13.527 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85363 0.96823 4.6242 3 0 Median 0.78468 0.73466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21335000 11949000 9385900 0 0 0 0 0 0 19757000 11137000 8619600 1578000 811670 766280 0 0 0 0 0 0 7037 2335 7311 35492;35493;35494;35495 35642;35643;35644;35645;35646 35646 5 ELFQTPGHTEEAVAAGK PKEEAQALEDLTGFKELFQTPGHTEEAVAA FQTPGHTEEAVAAGKTTKMPCESSPPESAD K E L G K T 3 0 0 0 0 1 3 2 1 0 1 1 0 1 1 0 2 0 0 1 0 0 17 0 1783.8741 P46013 P46013 1351 1367 MKI67 Antigen KI-67 yes yes 3 6.0937E-12 109.35 By MS/MS By MS/MS 2 5 0.9771 0.98352 21.423 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1259 1.2003 28.175 2 1 Median 0.9771 0.84683 15.512 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90966000 45040000 45926000 0 0 0 0 0 0 72641000 36234000 36407000 18325000 8806000 9519000 0 0 0 0 0 0 7038 2335 7312 35496;35497;35498;35499;35500;35501;35502 35647;35648;35649;35650;35651;35652;35653;35654 35648 8 ELFQTPGHTEELVAAGK PKEKAQALEDLAGFKELFQTPGHTEELVAA FQTPGHTEELVAAGKTTKIPCDSPQSDPVD K E L G K T 2 0 0 0 0 1 3 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1825.921 P46013 P46013 1229 1245 MKI67 Antigen KI-67 yes yes 2;3 0.00039129 49.463 By MS/MS By MS/MS 4 3 0.78027 0.77733 71.398 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8161 0.87543 99.401 4 2 Median 0.88156 0.76375 8.8063 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79718000 47462000 32255000 0 0 0 0 0 0 72915000 43683000 29232000 6802600 3779200 3023400 0 0 0 0 0 0 7039 2335 7313 35503;35504;35505;35506;35507;35508;35509 35655;35656;35657;35658;35659 35656 5 ELFQTPGHTEESMTDDK PKEKAKALEDLAGFKELFQTPGHTEESMTD FQTPGHTEESMTDDKITEVSCKSPQPDPVK K E L D K I 0 0 0 2 0 1 3 1 1 0 1 1 1 1 1 1 3 0 0 0 0 0 17 0 1963.8469 P46013 P46013 1959 1975 MKI67 Antigen KI-67 yes no 3 1.0652E-05 62.203 By MS/MS By MS/MS 2 2 0.92388 0.89223 6.4165 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81281 0.89223 5.1413 2 0 Median 1.0379 0.91438 9.5431 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12631000 6345400 6286000 0 0 0 0 0 0 7675000 3925900 3749000 4956400 2419500 2536900 0 0 0 0 0 0 7040 2335 7314 35510;35511;35512;35513 35660;35661;35662;35663 35663 4 ELFQTPGPSEESMTDEK PKEEAQSLEDLAGFKELFQTPGPSEESMTD FQTPGPSEESMTDEKTTKIACKSPPPESVD K E L E K T 0 0 0 1 0 1 4 1 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1923.8408 P46013 P46013 1107 1123 MKI67 Antigen KI-67 yes yes 2 0.0037519 46.592 By MS/MS 3 0.72372 0.78194 11.397 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72372 0.78194 11.397 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10380000 6350700 4029400 0 0 0 0 0 0 10380000 6350700 4029400 0 0 0 0 0 0 0 0 0 7041 2335 7315 35514;35515;35516 35664;35665;35666 35664 3 ELFQTPGTDKPTTDEK PKEKAQALEDLAGFKELFQTPGTDKPTTDE LFQTPGTDKPTTDEKTTKIACKSPQPDPVD K E L E K T 0 0 0 2 0 1 2 1 0 0 1 2 0 1 2 0 4 0 0 0 0 0 16 1 1805.8683 P46013 P46013 2321 2336 MKI67 Antigen KI-67 yes yes 3 4.3246E-05 56.339 By MS/MS By MS/MS 1 4 0.82423 0.80519 37.349 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0308 1.1946 NaN 1 0 Median 0.82212 0.78995 31.86 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31906000 16620000 15286000 0 0 0 0 0 0 15745000 7899400 7846000 16160000 8720500 7439800 0 0 0 0 0 0 7042 2335 7316 35517;35518;35519;35520;35521 35667;35668;35669;35670;35671;35672;35673;35674;35675 35668 9 ELFSAPGHTEESMTIDK RKEKARALEDLVDFKELFSAPGHTEESMTI FSAPGHTEESMTIDKNTKIPCKSPPPELTD K E L D K N 1 0 0 1 0 0 3 1 1 1 1 1 1 1 1 2 2 0 0 0 0 0 17 0 1890.8669 P46013 P46013 2564 2580 MKI67 Antigen KI-67 yes yes 3 0.0063446 24.793 By matching By MS/MS 2 2 1.0028 0.97618 14.829 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0037 1.0989 10.209 2 0 Median 1.0028 0.88054 8.0401 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13454000 6727900 6726600 0 0 0 0 0 0 9200400 4580300 4620100 4254100 2147700 2106400 0 0 0 0 0 0 7043 2335 7317 35522;35523;35524;35525 35676 35676 1 ELFSFFR VPEEKAAKVATKIEKELFSFFRDTDAKYKN KVATKIEKELFSFFRDTDAKYKNKYRSLMF K E L F R D 0 1 0 0 0 0 1 0 0 0 1 0 0 3 0 1 0 0 0 0 0 0 7 0 944.4756 Q92576;E7ER40;E7EVH3 Q92576 965 971 PHF3 PHD finger protein 3 yes no 2 0.056103 38.238 By matching By MS/MS By matching 2 3 1 1.1771 1.1303 48.431 6 Median NaN NaN NaN 0 0 Median 0.72862 0.65093 82.797 2 0 Median 1.1443 1.2651 11.698 3 0 Median 1.2618 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2308900 1121800 1187100 0 0 0 189450 83472 105980 1986500 984660 1001800 132980 53671 79306 0 0 0 0 0 0 7044 3539 7318 35526;35527;35528;35529;35530;35531 35677 35677 1 ELFSNLQEFAGPSGK RFTVIYNEQMASKKRELFSNLQEFAGPSGK ELFSNLQEFAGPSGKLSLLEVGCGTGANFK R E L G K L 1 0 1 0 0 1 2 2 0 0 2 1 0 2 1 2 0 0 0 0 0 0 15 0 1622.794 F8VQX6;H0YI09;Q9H8H3 F8VQX6 57 71 METTL7A Methyltransferase-like protein 7A yes no 2 6.239E-07 86.313 By MS/MS 1 0.6389 0.63678 NaN 1 Median 0.6389 0.63678 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6110800 3973400 2137400 6110800 3973400 2137400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7045 1060 7319 35532 35678 35678 1 ELFSPLHALNFGIGGDTTR GDSMVQLMQQYEIWRELFSPLHALNFGIGG PLHALNFGIGGDTTRHVLWRLKNGELENIK R E L T R H 1 1 1 1 0 0 1 3 1 1 3 0 0 2 1 1 2 0 0 0 0 0 19 0 2044.0378 P68402 P68402 61 79 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes yes 2;3 2.7126E-07 60.034 By MS/MS By MS/MS By matching 3 2 1 0.99009 0.86851 19.154 6 Median 0.92369 0.87473 26.774 3 0 Median 0.99009 0.8416 3.4428 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.089 0.89235 NaN 1 0 Median 31208000 15855000 15353000 25726000 13344000 12382000 5134300 2327800 2806500 0 0 0 0 0 0 0 0 0 346910 183210 163700 7046 2635 7320 35533;35534;35535;35536;35537;35538 35679;35680;35681;35682;35683;35684 35680 6 ELFVMAR ELVQKFIGEGARMVRELFVMAREHAPSIIF GEGARMVRELFVMAREHAPSIIFMDEIDSI R E L A R E 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 864.45276 P62195;J3QSA9;J3QQM1;J3KRP2 P62195 233 239 PSMC5 26S protease regulatory subunit 8 yes no 2 0.015054 72.618 By MS/MS By matching By matching By matching 1 2 1 1 1.2343 1.1416 17.923 5 Median 1.2343 1.2055 NaN 1 0 Median 1.1624 1.013 16.905 2 0 Median 1.4505 1.4563 NaN 1 0 Median 1.1874 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23944000 11109000 12835000 5669400 2694900 2974500 15899000 7425800 8473400 1662600 654530 1008100 712680 334090 378590 0 0 0 0 0 0 7047 2572 7321 35539;35540;35541;35542;35543 35685;35686 35686 2 ELFVQSEIFPLETPAFAIK DAGAQYGKVIDRRVRELFVQSEIFPLETPA QSEIFPLETPAFAIKEQGFRAIIISGGPNS R E L I K E 2 0 0 0 0 1 3 0 0 2 2 1 0 3 2 1 1 0 0 1 0 0 19 0 2178.1613 P49915 P49915 47 65 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 1.1202E-07 63.727 By MS/MS 2 0.8312 0.73355 9.4803 2 Median NaN NaN NaN 0 0 Median 0.8312 0.73355 9.4803 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2174500 1159100 1015400 0 0 0 2174500 1159100 1015400 0 0 0 0 0 0 0 0 0 0 0 0 7048 2405 7322 35544;35545 35687 35687 1 ELGDHVTNLR FIETHYLNEQVKAIKELGDHVTNLRKMGAP VKAIKELGDHVTNLRKMGAPESGLAEYLFD K E L L R K 0 1 1 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1152.5887 P02794;G3V192;G3V1D1 P02794 148 157 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 2 0.0057065 50.04 By MS/MS By MS/MS 1 1 0.77879 0.71073 51.569 2 Median 1.0199 1.0235 NaN 1 0 Median 0.59466 0.49356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984800 2689800 2295000 2698300 1239600 1458700 2286500 1450200 836340 0 0 0 0 0 0 0 0 0 0 0 0 7049 1838 7323 35546;35547 35688;35689;35690 35689 3 ELGDHVTNLRK FIETHYLNEQVKAIKELGDHVTNLRKMGAP KAIKELGDHVTNLRKMGAPESGLAEYLFDK K E L R K M 0 1 1 1 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 1 0 0 11 1 1280.6837 P02794;G3V192;G3V1D1 P02794 148 158 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 3 0.0010749 47.844 By MS/MS By MS/MS 1 1 0.74984 0.72236 40.778 2 Median 0.91651 0.96379 NaN 1 0 Median 0.61348 0.54141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11506000 6652600 4853300 3316800 1798800 1518000 8189100 4853800 3335300 0 0 0 0 0 0 0 0 0 0 0 0 7050 1838 7324 35548;35549 35691;35692;35693 35692 3 ELGELIPLR QAAGGLRAELLRAQRELGELIPLRQKVAEQ LLRAQRELGELIPLRQKVAEQERTAQQLRA R E L L R Q 0 1 0 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1038.6073 A0A087WY61;K4DIE0;Q14980 Q14980 1405 1413 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00059728 110.81 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 2 1 0.97398 0.87807 11.426 11 Median 1.1664 1.1695 NaN 1 0 Median 1.0272 0.87807 8.4941 3 1 Median 0.87688 0.94949 8.7925 2 0 Median 1.0042 0.88636 1.989 2 0 Median 0.78594 0.8083 0.25346 2 0 Median 0.97398 0.81386 NaN 1 0 Median 134860000 72222000 62636000 2003400 820860 1182500 6036500 2757900 3278500 68472000 36332000 32140000 2695100 1369600 1325500 54431000 30359000 24072000 1220000 583150 636840 7051 2905;77 7325 35550;35551;35552;35553;35554;35555;35556;35557;35558;35559;35560 35694;35695;35696;35697;35698;35699;35700;35701;35702;35703;35704;35705 35695 12 ELGENLDQILR FVGRLVSTLISKAGRELGENLDQILRAILS KAGRELGENLDQILRAILSKMQQAETLSVM R E L L R A 0 1 1 1 0 1 2 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1298.683 Q96P70 Q96P70 777 787 IPO9 Importin-9 yes yes 2 0.00015157 89.247 By MS/MS By MS/MS 1 1 1.2164 1.0976 4.2275 2 Median 1.1036 1.0652 NaN 1 1 Median 1.3407 1.1309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12775000 6398500 6376400 7530800 4150100 3380600 5244100 2248400 2995700 0 0 0 0 0 0 0 0 0 0 0 0 7052 3711 7326 35561;35562 35706;35707;35708 35708 3 ELGFSSHR ATVKARPSVLWCYKKELGFSSHRKKRMRQL VLWCYKKELGFSSHRKKRMRQLQKKIKNGT K E L H R K 0 1 0 0 0 0 1 1 1 0 1 0 0 1 0 2 0 0 0 0 0 0 8 0 931.45118 Q9H0A0;E9PMU0;E9PJN6 Q9H0A0 62 69 NAT10 N-acetyltransferase 10 yes no 2 0.016855 49.097 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3169 1.1676 5.7851 4 Median 1.3467 1.2703 NaN 1 0 Median 1.3339 1.1401 NaN 1 0 Median 1.1031 1.1958 NaN 1 0 Median 1.3001 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10077000 4600300 5477000 5244500 2256000 2988600 2849100 1398100 1451000 1350800 678690 672110 632840 267550 365290 0 0 0 0 0 0 7053 3921 7327 35563;35564;35565;35566 35709;35710;35711;35712 35710 4 ELGGLEGDPSPEEDEGIQK AKAAGGRSSSSKQRKELGGLEGDPSPEEDE LEGDPSPEEDEGIQKASPLTHSPPDEL___ K E L Q K A 0 0 0 2 0 1 5 4 0 1 2 1 0 0 2 1 0 0 0 0 0 0 19 0 1997.9066 Q9BT09 Q9BT09 248 266 CNPY3 Protein canopy homolog 3 yes yes 2 1.0165E-09 93.011 By matching By MS/MS By MS/MS 1 1 1 0.62844 0.5352 26.343 3 Median NaN NaN NaN 0 0 Median 0.88466 0.75168 NaN 1 0 Median 0.46671 0.4475 NaN 1 0 Median 0.62844 0.5352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6796700 3765300 3031400 0 0 0 429570 252240 177320 5369200 2974300 2394900 997950 538760 459190 0 0 0 0 0 0 7054 3820 7328 35567;35568;35569 35713;35714;35715 35714 3 ELGGLGMLSMGHVLIPQSDLR KMPSRFPPVVFYTPKELGGLGMLSMGHVLI MLSMGHVLIPQSDLRWSKQTDVGITHFRSG K E L L R W 0 1 0 1 0 1 1 4 1 1 5 0 2 0 1 2 0 0 0 1 0 0 21 0 2222.1551 Q6P2Q9;I3L3Z8 Q6P2Q9 1321 1341 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 1.1237E-11 63.69 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 1 2 1.0317 0.94509 58.273 11 Median 1.0968 1.0689 17.529 2 0 Median 2.1958 1.988 105.16 2 0 Median 0.80994 0.88276 4.809 3 0 Median 0.92026 0.80554 NaN 1 0 Median 1.0317 1.097 NaN 1 0 Median 2.1383 1.9312 88.185 2 0 Median 64150000 33301000 30850000 7657400 3659700 3997700 20433000 9710700 10722000 33286000 18628000 14658000 345100 170410 174690 1995900 954240 1041600 433220 177640 255580 7055 3157 7329;7330;7331 35570;35571;35572;35573;35574;35575;35576;35577;35578;35579;35580 35716;35717;35718;35719;35720;35721;35722;35723;35724;35725 35725 1669;1670 10 ELGIQVHSVTR RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ VPTRELGIQVHSVTRQLAQFCNITTCLAVG R E L T R Q 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1237.6779 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 269 279 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2;3 0.00012637 119.68 By MS/MS By MS/MS 1 3 1.7177 1.4806 20.792 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1822 1.1983 NaN 1 1 Median 1.4556 1.2103 29.393 2 1 Median 33004000 13539000 19465000 0 0 0 0 0 0 0 0 0 0 0 0 15405000 6078200 9326600 17599000 7461100 10138000 7056 635 7332 35581;35582;35583;35584 35726;35727;35728;35729 35727 4 ELGITALHIK YAAMLAAQDVAQRCKELGITALHIKLRATG AQRCKELGITALHIKLRATGGNRTKTPGPG K E L I K L 1 0 0 0 0 0 1 1 1 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1093.6495 P62263;A0A2R8Y811;E5RH77 P62263 87 96 RPS14 40S ribosomal protein S14 yes no 2 0.0014441 65.465 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 4 2 2 3 7 1.1308 0.94979 18.543 20 Median 1.1545 1.1094 4.0535 2 0 Median 1.1569 0.98884 20.747 4 0 Median 1.0389 1.0552 7.1915 2 0 Median 1.1247 0.9371 2.3318 2 0 Median 0.86054 0.8914 8.7355 3 0 Plateau 1.1275 0.94445 25.082 7 0 Median 210740000 100930000 109800000 91000000 43012000 47988000 45317000 21843000 23474000 24463000 11818000 12645000 2625900 1230900 1395000 29335000 15475000 13860000 17995000 7556100 10439000 7057 386 7333 35585;35586;35587;35588;35589;35590;35591;35592;35593;35594;35595;35596;35597;35598;35599;35600;35601;35602;35603;35604 35730;35731;35732;35733;35734;35735;35736 35731 7 ELGIWEPLAVK TWGVNGETGTLVDMKELGIWEPLAVKLQTY VDMKELGIWEPLAVKLQTYKTAVETAVLLL K E L V K L 1 0 0 0 0 0 2 1 0 1 2 1 0 0 1 0 0 1 0 1 0 0 11 0 1253.702 P49368;B4DUR8 P49368 492 502 CCT3 T-complex protein 1 subunit gamma yes no 2 0.013119 37.549 By MS/MS By matching By MS/MS By matching 3 3 2 2 1.0145 0.8642 16.994 10 Median 0.89623 0.83413 12.758 3 0 Median 1.0196 0.85284 8.2574 3 0 Median 1.0237 1.0235 2.9527 2 0 Median NaN NaN NaN 0 0 Median 1.1516 1.1229 0.41693 2 0 Median NaN NaN NaN 0 0 Median 58125000 29886000 28240000 34715000 18619000 16096000 15152000 7303700 7848400 6737700 3251200 3486500 0 0 0 1520000 711580 808440 0 0 0 7058 2379 7334 35605;35606;35607;35608;35609;35610;35611;35612;35613;35614 35737;35738;35739 35737 3 ELGLDEGVDSLK RRAQEEAKEAEMSRKELGLDEGVDSLKAAI SRKELGLDEGVDSLKAAIQSRQKDRQKEMD K E L L K A 0 0 0 2 0 0 2 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1273.6402 Q8WXX5 Q8WXX5 206 217 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 4.9665E-06 112.75 By MS/MS By MS/MS 1 1 0.67048 0.60304 16.462 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55621 0.53677 NaN 1 1 Median 0.80824 0.67748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68382000 42388000 25994000 0 0 0 0 0 0 58234000 36537000 21696000 10148000 5850500 4297700 0 0 0 0 0 0 7059 3522 7335 35615;35616 35740;35741 35740 2 ELGLEKDDKDAIEEK HRKYLLQEQLKIIKKELGLEKDDKDAIEEK ELGLEKDDKDAIEEKFRERLKELVVPKHVM K E L E K F 1 0 0 3 0 0 4 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 15 2 1730.8574 K7EKE6;P36776;K7EJE8;K7ER27;K7ER56 K7EKE6 292 306 LONP1 Lon protease homolog, mitochondrial yes no 3 0.00045011 40.237 By MS/MS 1 1.2843 1.3152 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2843 1.3152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1543900 711630 832240 0 0 0 0 0 0 0 0 0 1543900 711630 832240 0 0 0 0 0 0 7060 1370 7336 35617 35742 35742 1 ELGLGLGLGLK MAALRPPLEEPAAPRELGLGLGLGLKEKEE AAPRELGLGLGLGLKEKEEAVVAAAAGLEE R E L L K E 0 0 0 0 0 0 1 4 0 0 5 1 0 0 0 0 0 0 0 0 0 0 11 0 1068.6543 K7EQ03;K7EP90;Q9BTD8;K7ER08 K7EQ03 182 192 RBM42 RNA-binding protein 42 yes no 2 0.0036624 49.418 By matching By matching By MS/MS By matching By matching By matching 2 3 1 2 1 1 1.0508 0.95534 24.694 10 Median 1.2472 1.22 60.341 2 0 Median 1.0381 0.91381 9.0025 3 0 Median 0.93786 0.90429 NaN 1 0 Median 1.2387 1.0976 13.342 2 0 Median 1.0637 1.0228 NaN 1 0 Median 0.96479 0.82427 NaN 1 0 Median 57860000 28652000 29208000 1228400 778430 449950 3795200 1869900 1925300 47895000 23717000 24177000 3230900 1483100 1747800 1411700 652400 759340 299360 151140 148220 7061 1391 7337 35618;35619;35620;35621;35622;35623;35624;35625;35626;35627 35743 35743 1 ELGLNPEK EINEAFAAVSAAIVKELGLNPEKVNIEGGA VSAAIVKELGLNPEKVNIEGGAIALGHPLG K E L E K V 0 0 1 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 0 898.476 Q9BWD1 Q9BWD1 334 341 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 0.036433 65.252 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7062 3868 7338 35628 35744 35744 1 ELGLPEELVSR PLKDFHKDEVRILGRELGLPEELVSRHPFP ILGRELGLPEELVSRHPFPGPGLAIRVICA R E L S R H 0 1 0 0 0 0 3 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1240.6663 P49915 P49915 425 435 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.00014989 84.213 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 2 0.79837 0.73059 20.516 6 Median 0.72629 0.69586 NaN 1 0 Median 0.88907 0.76705 NaN 1 0 Median 0.87536 0.88923 NaN 1 0 Median 0.66277 0.57097 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91506 0.75881 32.182 2 0 Median 80803000 41501000 39301000 8043700 3953600 4090100 56546000 28861000 27684000 14247000 7551000 6696100 1486200 833540 652680 0 0 0 479690 301820 177880 7063 2405 7339 35629;35630;35631;35632;35633;35634;35635;35636 35745;35746;35747;35748;35749;35750;35751 35751 7 ELGLREENEGVYNGSWGGR MSTLLINQPQYAWLKELGLREENEGVYNGS REENEGVYNGSWGGRGEVITTYCPANNEPI K E L G R G 0 2 2 0 0 0 4 5 0 0 2 0 0 0 0 1 0 1 1 1 0 0 19 1 2120.9875 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0;H0YHM6;F8VVF2;F8WDY6;A0A0J9YWM6;F8WD33;A0A1B0GW65 P49419 44 62 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 3 1.2592E-08 82.482 By MS/MS 1 0.78878 0.79655 NaN 1 Median 0.78878 0.79655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11021000 5810900 5209800 11021000 5810900 5209800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7064 318 7340 35637 35752;35753 35752 2 ELGMEERPYSSR MEDLEGDAQSVLDARELGMEERPYSSRLKK DARELGMEERPYSSRLKKIGELLDQASVTR R E L S R L 0 2 0 0 0 0 3 1 0 0 1 0 1 0 1 2 0 0 1 0 0 0 12 1 1452.6667 Q9NX46 Q9NX46 234 245 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 3 0.0034925 36.847 By MS/MS By MS/MS 1 1 0.98983 0.98118 16.809 2 Median 1.0502 1.105 NaN 1 0 Median 0.93291 0.87123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108900 1590400 1518500 1655300 796080 859220 1453600 794300 659330 0 0 0 0 0 0 0 0 0 0 0 0 7065 4157 7341 35638;35639 35754;35755;35756;35757 35756 4 ELGNDAYK EEDLPENKKQALKEKELGNDAYKKKDFDTA KQALKEKELGNDAYKKKDFDTALKHYDKAK K E L Y K K 1 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 0 908.42396 P31948 P31948 230 237 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0035841 87.323 By MS/MS By MS/MS 1 1 1.1823 1.0587 11.733 2 Median 1.1996 1.1503 NaN 1 0 Median 1.1653 0.97441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20132000 9117200 11015000 4556200 2055600 2500600 15576000 7061700 8514000 0 0 0 0 0 0 0 0 0 0 0 0 7066 2212 7342 35640;35641 35758;35759;35760 35760 3 ELGNIIQK LMQAIDAVKPGVRYRELGNIIQKHAQANGF KPGVRYRELGNIIQKHAQANGFSVVRSYCG R E L Q K H 0 0 1 0 0 1 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 P53582;H0Y955 P53582 271 278 METAP1 Methionine aminopeptidase 1 yes no 2 0.007444 67.035 By MS/MS By MS/MS 1 1 1.2339 1.1531 32.203 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4008 1.4479 NaN 1 1 Median 1.0869 0.91825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12828000 5405000 7423300 0 0 0 0 0 0 10869000 4431000 6438000 1959400 973980 985370 0 0 0 0 0 0 7067 2468 7343 35642;35643 35761;35762;35763 35763 3 ELGPDGEEAEGPGAGDGPPR KSLYESFVSSSDRLRELGPDGEEAEGPGAG GEEAEGPGAGDGPPRSFDWGYEERSGAHSS R E L P R S 2 1 0 2 0 0 4 6 0 0 1 0 0 0 4 0 0 0 0 0 0 0 20 0 1905.8341 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 145 164 NELFE Negative elongation factor E yes no 2 7.0963E-09 83.692 By matching By MS/MS 1 1 0.51344 0.49002 4.1326 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45342 0.47591 NaN 1 0 Median 0.58141 0.50455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9491200 6013600 3477500 0 0 0 0 0 0 5054100 3457100 1597000 4437100 2556500 1880600 0 0 0 0 0 0 7068 2059 7344 35644;35645 35764 35764 1 ELGPLPDDDDMASPK NDAHILEKLLKEKRKELGPLPDDDDMASPK ELGPLPDDDDMASPKLKLSRKSGISPKKSK K E L P K L 1 0 0 4 0 0 1 1 0 0 2 1 1 0 3 1 0 0 0 0 0 0 15 0 1598.7134 Q86U86;E7EVG2;H0Y5B5 Q86U86 624 638 PBRM1 Protein polybromo-1 yes no 2 1.8034E-09 103.88 By MS/MS By matching 1 1 0.57151 0.57083 24.632 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4352 0.47958 NaN 1 0 Median 0.75053 0.67944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18372000 12791000 5581900 0 0 0 0 0 0 17816000 12481000 5335000 556390 309470 246920 0 0 0 0 0 0 7069 3273 7345 35646;35647 35765 35765 1 ELGSLPLPLSTSEQR HSTNQLAKETNELLKELGSLPLPLSTSEQR ELGSLPLPLSTSEQRQQRLQKERLMNDFSA K E L Q R Q 0 1 0 0 0 1 2 1 0 0 4 0 0 0 2 3 1 0 0 0 0 0 15 0 1625.8625 B1AJQ6;Q86Y82 B1AJQ6 83 97 STX12 Syntaxin-12 yes no 2 0.00032045 51.092 By MS/MS By matching By matching 1 1 1 1.0273 0.85584 38.579 3 Median 0.76195 0.71514 NaN 1 0 Median 1.0273 0.85584 NaN 1 0 Median 1.571 1.4984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14838000 7406400 7431500 6203500 3445900 2757600 5417600 2700100 2717600 3216700 1260400 1956300 0 0 0 0 0 0 0 0 0 7070 563 7346 35648;35649;35650 35766;35767 35767 2 ELGSLPQEAFEK GMLLKKKEECMKKIRELGSLPQEAFEKYQT KIRELGSLPQEAFEKYQTLSLKQLFRKLEQ R E L E K Y 1 0 0 0 0 1 3 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 12 0 1346.6718 Q9UQE7 Q9UQE7 945 956 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00083529 60.298 By matching By MS/MS 1 2 0.73453 0.76945 16.748 3 Median NaN NaN NaN 0 0 Median 0.6962 0.60656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77652 0.80298 6.0318 2 0 Median NaN NaN NaN 0 0 Median 36524000 19317000 17207000 0 0 0 2881700 1635400 1246300 0 0 0 0 0 0 33642000 17681000 15961000 0 0 0 7071 4362 7347 35651;35652;35653 35768;35769 35769 2 ELGSSTNALR LKTMKMRGQAFVIFKELGSSTNALRQLQGF FVIFKELGSSTNALRQLQGFPFYGKPMRIQ K E L L R Q 1 1 1 0 0 0 1 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1046.5356 P08579 P08579 58 67 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 2 0.00039551 101.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.3315 1.1479 13.075 5 Median 1.4728 1.3932 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3315 1.2787 NaN 1 0 Median 1.3839 1.1479 NaN 1 0 Median 1.1174 1.1277 NaN 1 0 Median 1.2224 0.98807 NaN 1 0 Median 61441000 28240000 33201000 7107400 3065300 4042000 0 0 0 24502000 11598000 12904000 3924200 1780700 2143400 22953000 10420000 12532000 2955000 1375900 1579200 7072 1904 7348 35654;35655;35656;35657;35658 35770;35771;35772;35773;35774;35775;35776;35777;35778 35776 9 ELGSSVALYSR FYVPDMKPSMFDVSRELGSSVALYSRKVLI DVSRELGSSVALYSRKVLIQTKATDILPKW R E L S R K 1 1 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 1 1 0 0 11 0 1180.6088 I3L0K7;I3L239;Q12931 Q12931 358 368 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 3.6058E-05 120.99 By MS/MS By MS/MS 3 1 1.3591 1.1854 8.721 3 Plateau 1.11 1.0437 0.23851 2 1 Median 1.4072 1.2139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176290000 71970000 104320000 114380000 49208000 65177000 61906000 22763000 39143000 0 0 0 0 0 0 0 0 0 0 0 0 7073 2771;1269 7349 35659;35660;35661;35662 35779;35780;35781;35782;35783;35784;35785 35780 7 ELGTVMR FSLFDKDGDGTITTKELGTVMRSLGQNPTE GDGTITTKELGTVMRSLGQNPTEAELQDMI K E L M R S 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 7 0 804.41637 P0DP25;P0DP24;P0DP23;A0A590UK56;E7EMB3;F8WBR5;M0QZ52;G3V479;C9J7T9;P27482;P02585 P0DP25 32 38 CALM2;CALM3;CALM1;TNNC2;CALML3 Calmodulin-like protein 3;Troponin C, skeletal muscle yes no 2 0.010361 82.263 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0684 1.0491 13.043 5 Median 1.2335 1.2086 20.02 2 0 Median 1.2284 1.0193 NaN 1 0 Median 1.0513 1.0655 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98011 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median 19412000 9220800 10191000 9449600 4449100 5000500 3243500 1408600 1834900 3873800 1886600 1987100 0 0 0 2845400 1476500 1368900 0 0 0 7074 1931 7350 35663;35664;35665;35666;35667 35786;35787;35788;35789;35790;35791 35789 6 ELGVGIALR RWRLVDSKGFDEYMKELGVGIALRKMGAMA FDEYMKELGVGIALRKMGAMAKPDCIITCD K E L L R K 1 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 926.55492 Q01469 Q01469 25 33 FABP5 Fatty acid-binding protein, epidermal yes yes 2 0.00077871 98.418 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.0381 1.0162 81.664 7 Plateau 1.0487 1.0174 9.4727 2 0 Median 1.2424 1.0605 120.76 3 0 Plateau 0.95737 0.97129 NaN 1 0 Median 0.57863 0.45974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80026000 36708000 43318000 32504000 15231000 17273000 41027000 18042000 22985000 6036400 3166900 2869400 458390 268540 189850 0 0 0 0 0 0 7075 2685 7351 35668;35669;35670;35671;35672;35673;35674 35792;35793;35794;35795;35796;35797;35798;35799;35800;35801 35799 10 ELGVGIALRK RWRLVDSKGFDEYMKELGVGIALRKMGAMA DEYMKELGVGIALRKMGAMAKPDCIITCDG K E L R K M 1 1 0 0 0 0 1 2 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 1 1054.6499 Q01469 Q01469 25 34 FABP5 Fatty acid-binding protein, epidermal yes yes 2 0.00054115 112.17 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 1 1 2 3 1.2855 1.1404 19.956 11 Median 1.1369 1.1179 2.816 2 0 Median 1.2601 1.1121 2.7603 2 0 Median 1.3434 1.4255 NaN 1 0 Median 1.4703 1.3015 NaN 1 0 Median 1.5943 1.7084 2.63 2 0 Median 1.2583 1.1338 17.107 3 0 Median 69807000 30924000 38883000 19777000 9476400 10300000 30426000 13205000 17221000 4260700 2014000 2246700 956580 352040 604540 5934500 2264400 3670000 8452500 3612200 4840400 7076 2685 7352 35675;35676;35677;35678;35679;35680;35681;35682;35683;35684;35685 35802;35803;35804;35805;35806 35804 5 ELGVGQMDWGNNLGLR RNMAPGAVCSPGESKELGVGQMDWGNNLGL LGVGQMDWGNNLGLRDLEVTCDPDSGGSQG K E L L R D 0 1 2 1 0 1 1 4 0 0 3 0 1 0 0 0 0 1 0 1 0 0 16 0 1757.8519 Q9C0C2 Q9C0C2 1303 1318 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 0.014833 42.556 By MS/MS 1 0.99619 1.1071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99619 1.1071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1301300 623810 677530 0 0 0 0 0 0 1301300 623810 677530 0 0 0 0 0 0 0 0 0 7077 3903 7353 35686 35807 35807 1 ELGVLVFENSAK FLSQVDFELLLAHARELGVLVFENSAKRLM HARELGVLVFENSAKRLMVVTPAGHSDVKR R E L A K R 1 0 1 0 0 0 2 1 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1304.6976 Q92759 Q92759 427 438 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.00047044 94.297 By MS/MS By MS/MS 1 1 1.094 1.0157 19.015 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91917 0.88792 NaN 1 1 Median 1.3021 1.1619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15336000 7669400 7666400 0 0 0 0 0 0 12872000 6573800 6298200 2463800 1095600 1368200 0 0 0 0 0 0 7078 3553 7354 35687;35688 35808;35809 35808 2 ELGVSTNANYK IWSATNMKWIEAKMKELGVSTNANYKITFM AKMKELGVSTNANYKITFMLDSAAMITVHT K E L Y K I 1 0 2 0 0 0 1 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1194.5881 Q8WVY7 Q8WVY7 196 206 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 2 0.00052008 75.378 By MS/MS By MS/MS 1 2 0.99594 0.93051 32.026 3 Median 0.99594 0.93051 NaN 1 0 Median 0.96329 0.99245 44.985 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13172000 6734500 6437500 6334600 3127400 3207200 6837400 3607100 3230300 0 0 0 0 0 0 0 0 0 0 0 0 7079 3504 7355 35689;35690;35691 35810;35811;35812 35810 3 ELGYSLEQR NLLKNIDEKLTEAARELGYSLEQRTVKMKQ LTEAARELGYSLEQRTVKMKQRDKKVVTKT R E L Q R T 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 1 0 0 0 9 0 1093.5404 Q9NWY4;A8MVJ9 Q9NWY4 198 206 C4orf27 UPF0609 protein C4orf27;Putative UPF0609 protein C4orf27-like yes no 2 0.00059348 111.17 By MS/MS By MS/MS 1 1 1.2957 1.2561 7.6973 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0908 1.1895 NaN 1 0 Median 1.539 1.3263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15116000 6466100 8649800 0 0 0 0 0 0 11876000 5177700 6698300 3240000 1288400 1951600 0 0 0 0 0 0 7080 4153 7356 35692;35693 35813;35814;35815;35816 35813 4 ELHINLIPNK RYESLTDPSKLDSGKELHINLIPNKQDRTL LDSGKELHINLIPNKQDRTLTIVDTGIGMT K E L N K Q 0 0 2 0 0 0 1 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 10 0 1189.6819 P07900;G3V2J8;Q14568 P07900 75 84 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2;3 0.00033126 83.206 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 0.89146 0.83032 29.398 5 Median 0.83108 0.75952 NaN 1 0 Median 0.94847 0.83032 NaN 1 0 Median 0.89146 0.98357 NaN 1 0 Median 0.88827 0.77081 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7905 1.5396 NaN 1 0 Median 59295000 24539000 34756000 11754000 4503600 7250900 38943000 15824000 23119000 5041600 2695200 2346400 1826600 943500 883130 0 0 0 1729600 572270 1157300 7081 1894 7357 35694;35695;35696;35697;35698;35699;35700 35817;35818;35819;35820;35821;35822 35821 6 ELHINLIPNKQDR RYESLTDPSKLDSGKELHINLIPNKQDRTL GKELHINLIPNKQDRTLTIVDTGIGMTKAD K E L D R T 0 1 2 1 0 1 1 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 13 1 1588.8685 P07900;G3V2J8 P07900 75 87 HSP90AA1 Heat shock protein HSP 90-alpha yes no 2;3;4 2.4807E-07 128.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 1 2 0.87955 0.90338 22.874 14 Median 0.96125 0.99134 23.261 4 1 Median 0.9444 0.90338 3.4385 3 0 Plateau 0.84238 0.95396 3.21 2 0 Median 0.75745 0.71341 0.82602 2 0 Median 1.1308 1.2436 NaN 1 0 Median 0.71156 0.6206 20.284 2 1 Median 679560000 319570000 359990000 297780000 135740000 162040000 322960000 152400000 170550000 40131000 21760000 18370000 8504100 4595000 3909000 6964000 3331000 3633000 3222900 1736900 1486000 7082 1894 7358 35701;35702;35703;35704;35705;35706;35707;35708;35709;35710;35711;35712;35713;35714;35715;35716 35823;35824;35825;35826;35827;35828;35829;35830;35831;35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844;35845;35846 35825 24 ELHPPATSHEAPGTK STQESLTAGGTDLKRELHPPATSHEAPGTK ELHPPATSHEAPGTKRSPSAPAATSSASSS R E L T K R 2 0 0 0 0 0 2 1 2 0 1 1 0 0 3 1 2 0 0 0 0 0 15 0 1570.774 A0A0B4J2G4;Q15345;A0A087X0S7;A0A087WTU1;A0A0C4DH00 A0A0B4J2G4 319 333 LRRC41 Leucine-rich repeat-containing protein 41 yes no 3 0.012847 23.456 By matching By MS/MS 1 1 0.75314 0.71611 34.355 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8808 0.91302 NaN 1 0 Median 0.64397 0.56166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1429600 758570 671000 0 0 0 0 0 0 899400 423130 476270 530170 335440 194730 0 0 0 0 0 0 7083 226 7359 35717;35718 35847 35847 1 ELHSEFSEVMNEIWASDQIR VRINSPNSKVNTLSKELHSEFSEVMNEIWA FSEVMNEIWASDQIRSAVLISSKPGCFIAG K E L I R S 1 1 1 1 0 1 4 0 1 2 1 0 1 1 0 3 0 1 0 1 0 0 20 0 2419.1114 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 67 86 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 0.0084818 22.01 By MS/MS By matching 1 1 1.1811 1.096 9.4477 2 Median 1.0315 1.0252 NaN 1 0 Median 1.3523 1.1718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4802200 2015400 2786700 1101900 517330 584620 3700200 1498100 2202100 0 0 0 0 0 0 0 0 0 0 0 0 7084 1180 7360 35719;35720 35848;35849 35849 2 ELIAEHKPHIDK YETLRQQQEEHRQLRELIAEHKPHIDKMNK QLRELIAEHKPHIDKMNKTGPQLLELSPGE R E L D K M 1 0 0 1 0 0 2 0 2 2 1 2 0 0 1 0 0 0 0 0 0 0 12 1 1428.7725 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3899 3910 DST Dystonin yes no 3 0.0011067 46.069 By MS/MS By MS/MS By matching 1 1 1 0.94627 0.99505 6.8858 3 Median 0.86745 0.93761 NaN 1 0 Median 1.0456 0.99505 NaN 1 0 Median 0.94627 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6152700 2978200 3174500 1537500 800060 737460 3435400 1577500 1857900 1179800 600660 579090 0 0 0 0 0 0 0 0 0 7085 934 7361 35721;35722;35723 35850;35851;35852 35852 3 ELIEELIAK TQQEGEEREKPKSRKELIEELIAKSKQEKR KPKSRKELIEELIAKSKQEKRERQAQREDA K E L A K S 1 0 0 0 0 0 3 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1056.6067 P78316;E9PFK5 P78316 191 199 NOP14 Nucleolar protein 14 yes no 2 0.013814 45.081 By matching By matching By matching By MS/MS By matching 2 1 1 2 1 1.2496 1.2485 18.926 7 Median NaN NaN NaN 0 0 Median 1.1212 1.0159 14.517 2 0 Median 1.3697 1.4714 NaN 1 0 Median 1.5912 1.4077 NaN 1 0 Median 1.3296 1.3259 8.5064 2 0 Median 1.1502 0.97249 NaN 1 0 Median 9995300 4685100 5310100 0 0 0 1193700 515620 678070 2327000 975100 1351900 138430 40273 98153 5188800 2618200 2570500 1147400 535900 611480 7086 2637 7362 35724;35725;35726;35727;35728;35729;35730 35853;35854;35855 35854 3 ELIEMLAISR ERLLSALEDLEVLSRELIEMLAISRNQKLL EVLSRELIEMLAISRNQKLLQAGEENQVLE R E L S R N 1 1 0 0 0 0 2 0 0 2 2 0 1 0 0 1 0 0 0 0 0 0 10 0 1173.6427 Q9NPJ6;Q5T911 Q9NPJ6 43 52 MED4 Mediator of RNA polymerase II transcription subunit 4 yes no 2 0.040057 31.074 By MS/MS By matching 1 1 1.0879 0.97521 3.6937 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0474 1.001 NaN 1 0 Median 1.1299 0.95007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1167200 528640 638570 0 0 0 0 0 0 1089900 484050 605850 77309 44593 32715 0 0 0 0 0 0 7087 4056 7363 35731;35732 35856 35856 1 ELIENSRDDTTWVK GKRTGTVQVLKRSGRELIENSRDDTTWVKG RELIENSRDDTTWVKGQLQELSTRWDTVCK R E L V K G 0 1 1 2 0 0 2 0 0 1 1 1 0 0 0 1 2 1 0 1 0 0 14 1 1704.8319 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6828 6841 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.044577 25.448 By MS/MS 1 1.358 1.407 NaN 1 Median 1.358 1.407 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9034100 3607900 5426200 9034100 3607900 5426200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7088 1220 7364 35733 35857 35857 1 ELIEQTKR LRWDLSAQQIEERTRELIEQTKRVYDQVGT QIEERTRELIEQTKRVYDQVGTQEFEDVSY R E L K R V 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 1 1015.5662 P52888;K7EKB6 P52888 39 46 THOP1 Thimet oligopeptidase yes no 2 0.024971 48.561 By MS/MS 1 1.1679 1.1726 NaN 1 Median NaN NaN NaN 0 0 Median 1.1679 1.1726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 751600 324100 427500 0 0 0 751600 324100 427500 0 0 0 0 0 0 0 0 0 0 0 0 7089 2460 7365 35734 35858 35858 1 ELIFEETAR KFDMELDDLPKEKLKELIFEETARFQPGYR PKEKLKELIFEETARFQPGYRS________ K E L A R F 1 1 0 0 0 0 3 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1106.5608 P28482 P28482 345 353 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 0.0049104 59.245 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.113 1.0928 22.223 5 Median 0.70163 0.69818 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1465 1.1735 10.723 3 0 Plateau 1.2513 1.0928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21811000 10922000 10889000 3778100 2151100 1627100 0 0 0 17395000 8439300 8955500 638000 331320 306680 0 0 0 0 0 0 7090 2166 7366 35735;35736;35737;35738;35739;35740 35859;35860;35861;35862 35861 4 ELIIGDR IKAVDSLVPIGRGQRELIIGDRQTGKTSIA VPIGRGQRELIIGDRQTGKTSIAIDTIINQ R E L D R Q 0 1 0 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 814.45487 P25705;K7EK77;K7ENJ4 P25705 208 214 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.0097793 83.377 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 1.2527 1.2026 15.739 8 Median 1.0728 1.0355 11.15 2 0 Median 1.4083 1.1786 23.427 3 0 Median 1.2211 1.2834 NaN 1 0 Median 1.4195 1.227 NaN 1 0 Median 1.2851 1.2962 NaN 1 0 Median NaN NaN NaN 0 0 Median 112070000 46597000 65478000 38734000 17263000 21471000 67330000 26908000 40421000 2258300 985880 1272400 985320 342870 642450 2766900 1096600 1670300 0 0 0 7091 2135 7367 35741;35742;35743;35744;35745;35746;35747;35748 35863;35864;35865;35866;35867;35868;35869;35870 35863 8 ELILDVVPSSR KMPELPLLPHDSHPKELILDVVPSSRRGSS SHPKELILDVVPSSRRGSSTERPQLGSQVD K E L S R R 0 1 0 1 0 0 1 0 0 1 2 0 0 0 1 2 0 0 0 2 0 0 11 0 1226.6871 A0A075B6Q3;H7C4B2;Q5H9F3 A0A075B6Q3 620 630 BCORL1 BCL-6 corepressor-like protein 1 yes no 2 0.0048509 47.198 By MS/MS 2 0.83881 0.91314 8.8763 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83881 0.91314 8.8763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2384700 1255400 1129300 0 0 0 0 0 0 2384700 1255400 1129300 0 0 0 0 0 0 0 0 0 7092 9 7368 35749;35750 35871;35872 35872 2 ELILFSNSDNER GQTTTYLTYNDFINKELILFSNSDNERSIP INKELILFSNSDNERSIPSMVDGLKPGQRK K E L E R S 0 1 2 1 0 0 2 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 12 0 1435.6943 P11388;Q02880;E9PCY5 P11388 702 713 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 3.4206E-15 190.88 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.2751 1.1886 6.8801 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0947 1.2037 NaN 1 0 Median 1.5638 1.3367 NaN 1 0 Median 1.1011 1.1176 4.6083 2 0 Median 1.4418 1.1886 0.55159 2 0 Median 68255000 31517000 36738000 0 0 0 0 0 0 10925000 5180300 5744600 753730 321060 432670 53178000 24535000 28643000 3398500 1480200 1918300 7093 1963;2704 7369 35751;35752;35753;35754;35755;35756 35873;35874;35875;35876;35877;35878;35879;35880 35878 8 ELILHNPVTLK FLMSATFNEDVQALKELILHNPVTLKLQES QALKELILHNPVTLKLQESQLPGPDQLQQF K E L L K L 0 0 1 0 0 0 1 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1275.7551 Q9NY93;G3V0G3;H7C3E9 Q9NY93 209 219 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0043727 48.091 By MS/MS 1 0.88145 0.84011 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88145 0.84011 NaN 1 0 Median NaN NaN NaN 0 0 Median 7417000 3877100 3539900 0 0 0 0 0 0 0 0 0 0 0 0 7417000 3877100 3539900 0 0 0 7094 4173 7370 35757 35881 35881 1 ELINNLDADSLR FNDDNTIPFIIRYRKELINNLDADSLREVQ YRKELINNLDADSLREVQQTLEELRAVAKK K E L L R E 1 1 2 2 0 0 1 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1371.6994 Q8N5C6 Q8N5C6 251 262 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 9.3873E-06 107.24 By matching By MS/MS By MS/MS 1 1 1 0.926 0.78918 25.648 3 Median NaN NaN NaN 0 0 Median 0.926 0.78436 NaN 1 0 Median 0.71753 0.78918 NaN 1 1 Median 1.4348 1.2268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9793000 4834900 4958200 0 0 0 2593300 1160500 1432900 6478100 3383100 3095000 721540 291250 430290 0 0 0 0 0 0 7095 3377 7371 35758;35759;35760 35882;35883 35882 2 ELIPNIPFQMLLR RFLYECPWRRLQELRELIPNIPFQMLLRGA LRELIPNIPFQMLLRGANAVGYTNYPDNVV R E L L R G 0 1 1 0 0 1 1 0 0 2 3 0 1 1 2 0 0 0 0 0 0 0 13 0 1582.8905 P11498 P11498 632 644 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.024156 28.727 By MS/MS By matching By MS/MS 3 1 1 0.81877 0.81586 3.3837 5 Median 0.81877 0.79167 4.0895 3 0 Median 0.96226 0.83491 NaN 1 0 Median 0.76316 0.81586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7868000 4107500 3760500 6018600 3186400 2832200 1301200 636730 664450 548220 284350 263880 0 0 0 0 0 0 0 0 0 7096 1967 7372 35761;35762;35763;35764;35765 35884;35885 35884 2 ELIPTEEALR PYTEQTISLFQAMKKELIPTEEALRLLDAQ QAMKKELIPTEEALRLLDAQLATGGIVDPR K E L L R L 1 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1169.6292 Q15149;H0YDN1 Q15149 3926 3935 PLEC Plectin yes no 2 0.00039409 90.709 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 3 3 1.0628 0.95658 17.532 11 Median 0.96133 0.93105 NaN 1 0 Median 1.2979 1.0947 19.676 3 0 Median 0.86178 0.90508 NaN 1 0 Median 0.96479 0.83961 NaN 1 0 Median 1.2023 1.2569 24.041 2 1 Median 1.1799 0.95658 9.1542 3 0 Median 94482000 48934000 45548000 38253000 20820000 17433000 19561000 9766500 9794500 20093000 10971000 9122300 1196700 599660 597040 11014000 4782100 6231400 4365000 1995300 2369600 7097 2933 7373 35766;35767;35768;35769;35770;35771;35772;35773;35774;35775;35776;35777 35886;35887;35888;35889;35890;35891;35892;35893;35894;35895;35896 35889 11 ELIQEYGAQSGGLEK WDLLSSPYFTEDRKRELIQEYGAQSGGLEK ELIQEYGAQSGGLEKLLEIITTTIEETETQ R E L E K L 1 0 0 0 0 2 3 3 0 1 2 1 0 0 0 1 0 0 1 0 0 0 15 0 1620.7995 P58107;A0A075B730 P58107 1812 1826 EPPK1 Epiplakin yes no 2 7.9584E-20 191.29 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.245 1.1373 66.345 7 Median 1.3023 1.3085 104.01 3 0 Plateau 1.2316 1.0957 5.2697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2538 1.3135 NaN 1 1 Median 1.245 1.0691 NaN 1 0 Median 138870000 59679000 79189000 98705000 42184000 56520000 33622000 14739000 18884000 0 0 0 0 0 0 5709100 2447100 3262000 831230 308310 522920 7098 2520 7374 35778;35779;35780;35781;35782;35783;35784 35897;35898;35899;35900;35901;35902;35903;35904;35905 35903 9 ELIQGGEYFSDEQMR TLRTRLRNRRYAALRELIQGGEYFSDEQMR ELIQGGEYFSDEQMRFRAPLLYEQYIGQYL R E L M R F 0 1 0 1 0 2 3 2 0 1 1 0 1 1 0 1 0 0 1 0 0 0 15 0 1800.7989 Q96F63 Q96F63 164 178 CCDC97 Coiled-coil domain-containing protein 97 yes yes 2 2.9537E-19 134.75 By MS/MS 1 0.78127 0.78393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78127 0.78393 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5264200 2738100 2526100 0 0 0 0 0 0 5264200 2738100 2526100 0 0 0 0 0 0 0 0 0 7099 3647 7375 35785 35906 35906 1 ELIQTSALNFLTPLR IKCGETQKRIGTADRELIQTSALNFLTPLR ELIQTSALNFLTPLRNFIEGDYKTIAKERK R E L L R N 1 1 1 0 0 1 1 0 0 1 4 0 0 1 1 1 2 0 0 0 0 0 15 0 1714.9618 A0A087WW40;Q9Y371 A0A087WW40 134 148 SH3GLB1 Endophilin-B1 yes no 2 2.2517E-06 92.866 By MS/MS By matching 1 1 0.94104 0.8765 1.6246 2 Median 0.86951 0.86649 NaN 1 0 Median 1.0184 0.88663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9170000 4622100 4547900 3311500 1725300 1586200 5858500 2896900 2961700 0 0 0 0 0 0 0 0 0 0 0 0 7100 52 7376 35786;35787 35907;35908 35907 2 ELISDNQYR LDDEEDQGIYQSKVRELISDNQYRLIVNVN YQSKVRELISDNQYRLIVNVNDLRRKNEKR R E L Y R L 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1136.5462 P25205 P25205 38 46 MCM3 DNA replication licensing factor MCM3 yes yes 2 4.7572E-08 139.31 By MS/MS 1 0.77076 0.81852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77076 0.81852 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10221000 5746600 4474100 0 0 0 0 0 0 10221000 5746600 4474100 0 0 0 0 0 0 0 0 0 7101 2129 7377 35788 35909 35909 1 ELISFLSEPEILVK VDEDFPEDSSSQKVKELISFLSEPEILVKE KELISFLSEPEILVKENNMHPKHCNLLGDE K E L V K E 0 0 0 0 0 0 3 0 0 2 3 1 0 1 1 2 0 0 0 1 0 0 14 0 1615.9073 A6NDU8;A0A0C4DGW6 A6NDU8 98 111 C5orf51 UPF0600 protein C5orf51 yes no 2 9.7896E-07 89.266 By MS/MS 2 0.89781 0.75463 NaN 1 Median NaN NaN NaN 0 0 Median 0.89781 0.75463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10589000 4575800 6013100 0 0 0 10589000 4575800 6013100 0 0 0 0 0 0 0 0 0 0 0 0 7102 507 7378 35789;35790 35910;35911 35911 2 ELISLAGPTDDIQSTVPQVHALNILR EPKKGRMDLLKITMKELISLAGPTDDIQST IQSTVPQVHALNILRALFRDTRLGENIIPY K E L L R A 2 1 1 2 0 2 1 1 1 3 4 0 0 0 2 2 2 0 0 2 0 0 26 0 2799.5131 Q6YHU6;H0Y3V5 Q6YHU6 1190 1215 THADA Thyroid adenoma-associated protein yes no 3 0.064083 6.295 By MS/MS 1 0.97436 0.81392 NaN 1 Median NaN NaN NaN 0 0 Median 0.97436 0.81392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1596200 700980 895230 0 0 0 1596200 700980 895230 0 0 0 0 0 0 0 0 0 0 0 0 7103 3194 7379 35791 35912 35912 1 ELISNASDALDK LIINTFYSNKEIFLRELISNASDALDKIRY FLRELISNASDALDKIRYESLTDPSKLDSG R E L D K I 2 0 1 2 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1274.6354 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238 42 53 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 2 3.1534E-06 110.38 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 7 2 1 2 3 1.1642 1.0231 25.325 20 Median 1.0906 0.98453 31.779 6 2 Median 1.1666 0.99902 7.6104 7 1 Median 1.1115 1.1647 2.234 2 0 Median 0.85408 0.71523 NaN 1 0 Median 1.9648 2.0009 NaN 1 1 Median 1.306 1.0555 17.023 3 0 Median 1686600000 763190000 923390000 630640000 290080000 340570000 956880000 429330000 527560000 74860000 34766000 40094000 825000 493980 331020 17673000 6086800 11586000 5698900 2444100 3254900 7104 1899;2006 7380 35792;35793;35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809;35810;35811;35812 35913;35914;35915;35916;35917;35918;35919;35920;35921;35922;35923;35924;35925;35926;35927;35928;35929;35930;35931;35932;35933;35934;35935;35936 35915 23 ELISNASDALDKIR LIINTFYSNKEIFLRELISNASDALDKIRY RELISNASDALDKIRYESLTDPSKLDSGKE R E L I R Y 2 1 1 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 14 1 1543.8206 P08238;P14625;Q96GW1;A0A1W2PRR1;F8W026 P08238 42 55 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin no no 2;3 2.7602E-35 215.87 By MS/MS By MS/MS By MS/MS By MS/MS 16 9 4 1 1.1113 1.1321 32.067 30 Median 1.0829 1.1139 33.967 16 1 Median 1.147 1.1416 33.805 9 0 Median 1.0167 1.1293 4.6209 4 3 Median NaN NaN NaN 0 0 Median 1.5808 1.7389 NaN 1 1 Median NaN NaN NaN 0 0 Median 760540000 352480000 408060000 664280000 308150000 356130000 25458000 11368000 14090000 58113000 28710000 29403000 0 0 0 12692000 4253600 8438600 0 0 0 7105 1899;2006 7381 35813;35814;35815;35816;35817;35818;35819;35820;35821;35822;35823;35824;35825;35826;35827;35828;35829;35830;35831;35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842 35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947;35948;35949;35950;35951;35952;35953;35954;35955;35956;35957;35958 35955 22 ELISNASDALDKIRYESLTDPSK LIINTFYSNKEIFLRELISNASDALDKIRY ALDKIRYESLTDPSKLDSGKELKIDIIPNP R E L S K L 2 1 1 3 0 0 2 0 0 2 3 2 0 0 1 4 1 0 1 0 0 0 23 2 2564.297 P08238 P08238 42 64 HSP90AB1 Heat shock protein HSP 90-beta yes yes 3 0.017135 15.896 By MS/MS 1 0.82039 0.9036 NaN 1 Median 0.82039 0.9036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9262000 4607800 4654200 9262000 4607800 4654200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7106 1899 7382 35843 35959;35960 35960 2 ELISNASDALEK IVARSLYSEKEVFIRELISNASDALEKLRH FIRELISNASDALEKLRHKLVSDGQALPEM R E L E K L 2 0 1 1 0 0 2 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1288.6511 Q12931 Q12931 115 126 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 0.00014339 91.855 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 1.1761 1.0726 83.778 12 Median 0.9253 0.88978 32.54 4 1 Median 1.1141 0.94183 21.602 3 1 Median 3.946 4.0127 188.44 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6089 1.3322 19.985 3 1 Median 300020000 166970000 133050000 253520000 148060000 105460000 7527900 3446100 4081800 36330000 14585000 21745000 0 0 0 0 0 0 2640900 876010 1764900 7107 2771 7383 35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855 35961;35962;35963;35964;35965;35966;35967 35963 7 ELISNSSDALDK LIINTFYSNKEIFLRELISNSSDALDKIRY FLRELISNSSDALDKIRYESLTDPSKLDSG R E L D K I 1 0 1 2 0 0 1 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1290.6303 P07900;G3V2J8;Q14568 P07900 47 58 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2 3.9932E-06 125.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 1 1 1 1.1447 0.99308 29.737 13 Median 1.1736 1.0902 15.664 3 1 Median 1.0568 0.88496 10.196 5 1 Median 0.76419 0.85167 67.763 2 0 Median 1.215 1.0511 NaN 1 0 Median 1.5862 1.6307 NaN 1 1 Median 1.6128 1.3307 NaN 1 0 Median 502870000 225870000 277000000 174290000 75952000 98337000 258730000 119700000 139030000 48099000 21551000 26548000 12992000 5593500 7398700 6719400 2246900 4472500 2033200 825280 1207900 7108 1894 7384 35856;35857;35858;35859;35860;35861;35862;35863;35864;35865;35866;35867;35868 35968;35969;35970;35971;35972;35973;35974;35975;35976;35977;35978;35979;35980;35981;35982;35983;35984;35985;35986 35973 19 ELISNSSDALDKIR LIINTFYSNKEIFLRELISNSSDALDKIRY RELISNSSDALDKIRYESLTDPSKLDSGKE R E L I R Y 1 1 1 2 0 0 1 0 0 2 2 1 0 0 0 3 0 0 0 0 0 0 14 1 1559.8155 P07900;G3V2J8 P07900 47 60 HSP90AA1 Heat shock protein HSP 90-alpha yes no 2;3 6.8204E-24 196.38 By MS/MS By MS/MS By MS/MS By matching By MS/MS 8 6 2 1 3 1.155 1.1968 24.776 20 Median 1.155 1.2006 28.325 8 1 Median 1.1076 1.034 15.559 6 0 Median 1.0876 1.2308 3.8878 2 0 Median 1.3912 1.3422 NaN 1 0 Median 1.6608 1.827 21.013 3 2 Plateau NaN NaN NaN 0 0 Median 922690000 419410000 503280000 819820000 372990000 446830000 20330000 9415500 10915000 53721000 25632000 28090000 419380 135650 283730 28391000 11234000 17158000 0 0 0 7109 1894 7385 35869;35870;35871;35872;35873;35874;35875;35876;35877;35878;35879;35880;35881;35882;35883;35884;35885;35886;35887;35888 35987;35988;35989;35990;35991;35992;35993;35994;35995;35996;35997;35998;35999;36000;36001;36002;36003;36004;36005 35989 19 ELISNSSDALDKIRYESLTDPSK LIINTFYSNKEIFLRELISNSSDALDKIRY ALDKIRYESLTDPSKLDSGKELHINLIPNK R E L S K L 1 1 1 3 0 0 2 0 0 2 3 2 0 0 1 5 1 0 1 0 0 0 23 2 2580.2919 P07900;G3V2J8 P07900 47 69 HSP90AA1 Heat shock protein HSP 90-alpha yes no 3 5.795E-05 34.615 By MS/MS 1 0.94644 1.0424 NaN 1 Median 0.94644 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9549900 4566300 4983600 9549900 4566300 4983600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7110 1894 7386 35889 36006;36007 36006 2 ELKEALGIPAAASFK FINLCDALNAWQLVKELKEALGIPAAASFK ELKEALGIPAAASFKHVSPAGAAVGIPLSE K E L F K H 4 0 0 0 0 0 2 1 0 1 2 2 0 1 1 1 0 0 0 0 0 0 15 1 1543.861 P31939 P31939 252 266 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 2;3 0.0034817 46.592 By MS/MS 2 0.85521 0.80951 6.3132 2 Median 0.85521 0.80951 6.3132 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7981200 3919600 4061600 7981200 3919600 4061600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7111 2207 7387 35890;35891 36008;36009;36010 36009 3 ELKEEIEEK EAEQYFSTLYKTQVKELKEEIEEKNRENLK YKTQVKELKEEIEEKNRENLKKIQELQNEK K E L E K N 0 0 0 0 0 0 5 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 9 1 1145.5816 A0A0U1RQV4;Q13464 A0A0U1RQV4 862 870 ROCK1 Rho-associated protein kinase 1 yes no 2 0.032621 53.166 By MS/MS 1 0.98375 0.916 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98375 0.916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 505840 264100 241740 0 0 0 0 0 0 0 0 0 505840 264100 241740 0 0 0 0 0 0 7112 305 7388 35892 36011 36011 1 ELKELFEPYGAVYQINVLR IKMFVGQIPRSWSEKELKELFEPYGAVYQI LFEPYGAVYQINVLRDRSQNPPQSKGCCFV K E L L R D 1 1 1 0 0 1 3 1 0 1 3 1 0 1 1 0 0 0 2 2 0 0 19 1 2280.2154 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9;V9GY47;A0A0J9YXK1 E9PC62 62 80 CELF2 CUGBP Elav-like family member 2 yes no 3 0.066553 8.7088 By MS/MS 1 1.0474 1.1685 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0474 1.1685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3095900 1538100 1557800 0 0 0 0 0 0 3095900 1538100 1557800 0 0 0 0 0 0 0 0 0 7113 294 7389 35893 36012 36012 1 ELKEPPQGAHFLSR KNRPLKGRINLVLSRELKEPPQGAHFLSRS RELKEPPQGAHFLSRSLDDALKLTEQPELA R E L S R S 1 1 0 0 0 1 2 1 1 0 2 1 0 1 2 1 0 0 0 0 0 0 14 1 1607.842 P00374;B4DM58 P00374 79 92 DHFR Dihydrofolate reductase yes no 4 0.0001836 65.472 By MS/MS By matching By matching 2 1 1 0.81992 0.80697 55.851 4 Median 0.88495 0.92019 22.744 2 0 Median 0.89597 0.83115 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34074 0.30163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21907000 11796000 10110000 15431000 8302200 7128800 5631700 2913200 2718500 0 0 0 843840 580700 263140 0 0 0 0 0 0 7114 1815 7390 35894;35895;35896;35897 36013 36013 1 ELKEQLGEEIDSK LQCSIEMPNISYAWKELKEQLGEEIDSKVK WKELKEQLGEEIDSKVKGMVFLKGKLGVCF K E L S K V 0 0 0 1 0 1 4 1 0 1 2 2 0 0 0 1 0 0 0 0 0 0 13 1 1516.7621 Q9NR30 Q9NR30 656 668 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 1.7632E-40 218.43 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 2 1.1648 1.1082 18.869 11 Median NaN NaN NaN 0 0 Median 1.1469 1.1082 NaN 1 0 Median 1.1804 1.3414 16.169 4 0 Median 1.2356 1.2071 15.224 2 0 Median 1.0958 1.2277 17.803 2 0 Median 1.0222 0.92324 25.4 2 0 Median 73280000 32849000 40431000 0 0 0 946030 466690 479340 52582000 23573000 29009000 5553700 2249500 3304200 10830000 4948900 5881500 3368000 1611200 1756800 7115 4076 7391 35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908 36014;36015;36016;36017;36018;36019;36020 36015 7 ELKIDIIPNPQER RYESLTDPSKLDSGKELKIDIIPNPQERTL GKELKIDIIPNPQERTLTLVDTGIGMTKAD K E L E R T 0 1 1 1 0 1 2 0 0 3 1 1 0 0 2 0 0 0 0 0 0 0 13 1 1563.8621 P08238;Q58FF7 P08238 70 82 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2;3 9.5123E-06 159.94 By MS/MS By matching 2 1 0.953 0.9805 13.522 3 Plateau 0.953 0.9805 11.137 2 0 Median 0.81231 0.81052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66181000 33392000 32790000 62881000 31341000 31541000 3299800 2051000 1248800 0 0 0 0 0 0 0 0 0 0 0 0 7116 1899 7392 35909;35910;35911 36021;36022;36023;36024;36025 36025 5 ELKLENHQENSR ERKEERQKKRKREKKELKLENHQENSRNQK EKKELKLENHQENSRNQKPKKRKKGQEADL K E L S R N 0 1 2 0 0 1 3 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1495.7379 Q9NX58 Q9NX58 205 216 LYAR Cell growth-regulating nucleolar protein yes yes 3 0.007537 31.228 By matching By matching By MS/MS 1 1 1 1.076 1.0912 17.054 3 Median NaN NaN NaN 0 0 Median 1.2354 1.122 NaN 1 0 Median 1.076 1.0912 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79569 0.82432 NaN 1 0 Median NaN NaN NaN 0 0 Median 1795000 920410 874600 0 0 0 261600 110060 151540 562500 246470 316030 0 0 0 970910 563890 407020 0 0 0 7117 4160 7393 35912;35913;35914 36026;36027 36027 2 ELKTDNLPNQAR HLRSQPVYIQYSNHRELKTDNLPNQARAQA NHRELKTDNLPNQARAQAALQAVSAVQSGS R E L A R A 1 1 2 1 0 1 1 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 12 1 1397.7263 O95758;X6R242 O95758 135 146 PTBP3 Polypyrimidine tract-binding protein 3 yes no 3 0.0012304 45.077 By MS/MS 1 0.72461 0.75283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72461 0.75283 NaN 1 0 Median NaN NaN NaN 0 0 Median 2418900 1279200 1139700 0 0 0 0 0 0 0 0 0 0 0 0 2418900 1279200 1139700 0 0 0 7118 1791 7394 35915 36028;36029;36030 36030 3 ELLAALQK TRGKSLPHSQRKQARELLAALQKVVVPIYC SQRKQARELLAALQKVVVPIYCTSFLAVEE R E L Q K V 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 884.53312 J3QK89;Q8IWX8 J3QK89 243 250 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.013171 53.554 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.1462 1.1478 13.19 5 Median NaN NaN NaN 0 0 Median 1.2079 1.0609 NaN 1 0 Median 1.1015 1.1745 3.2495 2 1 Median NaN NaN NaN 0 0 Median 1.2386 1.2723 NaN 1 0 Median 1.0854 0.90546 NaN 1 0 Median 15216000 6877600 8338400 0 0 0 1546100 562980 983160 5936500 2795100 3141400 0 0 0 7068100 3180600 3887500 665190 338860 326330 7119 1338 7395 35916;35917;35918;35919;35920 36031;36032 36032 2 ELLADQNLK FIDIYLDELSKVGGKELLADQNLKFIDPFC SKVGGKELLADQNLKFIDPFCKIAAKTKDH K E L L K F 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 Q14684 Q14684 183 191 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0090327 66.073 By MS/MS 1 0.95725 1.0421 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95725 1.0421 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13604000 6479800 7124000 0 0 0 0 0 0 13604000 6479800 7124000 0 0 0 0 0 0 0 0 0 7120 2890 7396 35921 36033 36033 1 ELLAFQTSEK GIEETILEGHLGVTKELLAFQTSEKKFHIG LGVTKELLAFQTSEKKFHIGCEKGGANLIK K E L E K K 1 0 0 0 0 1 2 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1164.6027 Q93008;O00507 Q93008 1436 1445 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.00041856 75.378 By MS/MS By MS/MS By matching 1 1 1 0.91669 0.88634 1.7788 3 Median 0.91669 0.88634 NaN 1 1 Median 1.0232 0.90333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83151 0.87178 NaN 1 0 Median NaN NaN NaN 0 0 Median 23576000 11354000 12222000 8529100 4056400 4472700 10082000 4658800 5423200 0 0 0 0 0 0 4965000 2639000 2326000 0 0 0 7121 3573 7397 35922;35923;35924 36034;36035 36035 2 ELLALDSVDPEGR KTDKKYLMIEEYLTKELLALDSVDPEGRAD TKELLALDSVDPEGRADVRQARRDGVRKVQ K E L G R A 1 1 0 2 0 0 2 1 0 0 3 0 0 0 1 1 0 0 0 1 0 0 13 0 1412.7147 O95817 O95817 461 473 BAG3 BAG family molecular chaperone regulator 3 yes yes 2 7.9643E-07 102.52 By MS/MS By matching By matching 1 1 1 1.0376 1.0071 63.664 3 Median 1.0376 1.0071 NaN 1 0 Median 1.1736 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25777 0.33963 NaN 1 0 Median NaN NaN NaN 0 0 Median 6353600 3342200 3011500 3387800 1550300 1837500 1245600 574980 670610 0 0 0 0 0 0 1720200 1216800 503380 0 0 0 7122 1796 7398 35925;35926;35927 36036;36037 36037 2 ELLAVPDNYK SDFAKIINNTENLVRELLAVPDNYKVIFLQ ENLVRELLAVPDNYKVIFLQGGGCGQFSAV R E L Y K V 1 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 10 0 1160.6077 Q9Y617 Q9Y617 62 71 PSAT1 Phosphoserine aminotransferase yes yes 2 0.0013065 66.692 By MS/MS By matching By matching 1 1 1 0.49706 0.43627 103.36 3 Median 1.0073 0.92995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.091367 0.12038 NaN 1 0 Median 0.49706 0.43627 NaN 1 0 Median 34806000 25201000 9605100 19602000 10859000 8742400 0 0 0 0 0 0 0 0 0 14956000 14179000 777820 247870 163010 84862 7123 4476 7399 35928;35929;35930 36038;36039 36039 2 ELLDGGANPLQR ALHYAVLADDYRTVKELLDGGANPLQRNEM TVKELLDGGANPLQRNEMGHTPLDYAREGE K E L Q R N 1 1 1 1 0 1 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 12 0 1281.6677 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 289 300 CLPB Caseinolytic peptidase B protein homolog no no 2 9.3647E-06 104.17 By MS/MS By MS/MS By MS/MS 1 1 2 0.9554 0.88092 12.918 4 Median 1.0841 1.0333 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.88095 0.88262 NaN 1 0 Median 0.9554 0.81368 10.958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22997000 12069000 10928000 10221000 5506300 4714600 0 0 0 11029000 5850000 5179200 1747200 713090 1034100 0 0 0 0 0 0 7124 1181 7400 35931;35932;35933;35934 36040;36041;36042;36043 36041 4 ELLDLAMQNAWFR DLVRNLEGANQHVSKELLDLAMQNAWFRKS SKELLDLAMQNAWFRKSRFKGGKGKKLNIG K E L F R K 2 1 1 1 0 1 1 0 0 0 3 0 1 1 0 0 0 1 0 0 0 0 13 0 1605.7973 Q86XP3;A0A0A0MSJ0 Q86XP3 627 639 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.00030441 77.677 By MS/MS By MS/MS By matching 2 1 1 0.95265 1.0108 6.1713 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90549 0.97833 9.6038 2 0 Median NaN NaN NaN 0 0 Median 0.92629 0.98699 NaN 1 0 Median 1.2205 1.0352 NaN 1 0 Median 5811400 3020900 2790500 0 0 0 0 0 0 4008900 2071800 1937100 0 0 0 1668500 893830 774660 133960 55245 78716 7125 3302 7401 35935;35936;35937;35938 36044;36045;36046;36047 36047 4 ELLDLSR EDMFPAYLQEAFFGKELLDLSRKALFAVGV LQEAFFGKELLDLSRKALFAVGVGRPSFGL K E L S R K 0 1 0 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 844.46543 O14686;A0A3B3ISC8 O14686 1780 1786 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 0.015511 71.296 By MS/MS By matching 1 1 1.1885 1.145 10.207 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1513 1.2307 NaN 1 0 Median 1.2268 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6459900 2769900 3690000 0 0 0 0 0 0 6000900 2559800 3441100 458940 210100 248830 0 0 0 0 0 0 7126 1490 7402 35939;35940 36048 36048 1 ELLDTELDLYKK RCLPKSIKTKTQMQKELLDTELDLYKKMQA MQKELLDTELDLYKKMQAGEEVTELRRKYT K E L K K M 0 0 0 2 0 0 2 0 0 0 4 2 0 0 0 0 1 0 1 0 0 0 12 1 1478.7868 Q5T8P6 Q5T8P6 813 824 RBM26 RNA-binding protein 26 no no 3 0.00035529 52.344 By matching By MS/MS By matching 1 1 1 1.3741 1.3156 17.806 3 Median NaN NaN NaN 0 0 Median 1.3741 1.3156 NaN 1 0 Median 0.85675 0.98353 NaN 1 0 Median 1.4267 1.359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5384700 2387300 2997500 0 0 0 162520 64613 97910 5138700 2282700 2856000 83543 39965 43577 0 0 0 0 0 0 7127 3097 7403 35941;35942;35943 36049;36050 36050 2 ELLEIVKK SISIFHYGTSQKSERELLEIVKKNFDLRPG TSQKSERELLEIVKKNFDLRPGVIVRDLDL R E L K K N 0 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 8 1 970.60628 P31153 P31153 344 351 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 0.00011216 120.65 By MS/MS By MS/MS By matching 3 2 1 1.1265 1.0453 11.471 5 Median 1.1265 1.0453 4.6677 3 2 Median 1.0227 0.95268 20.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53034000 24828000 28206000 35813000 16930000 18883000 16934000 7796600 9137500 0 0 0 286380 101520 184860 0 0 0 0 0 0 7128 2202 7404 35944;35945;35946;35947;35948;35949 36051;36052;36053;36054 36051 4 ELLELASR IRIEGDPQGVQQAKRELLELASRMENERTK GVQQAKRELLELASRMENERTKDLIIEQRF R E L S R M 1 1 0 0 0 0 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 929.5182 Q00341;A0A024R4E5;H0Y394 Q00341 496 503 HDLBP Vigilin yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.99847 0.9571 64.625 4 Median 0.30073 0.28742 NaN 1 0 Median 1.1454 0.95797 NaN 1 0 Median 0.87039 0.95623 NaN 1 0 Median 1.3547 1.1913 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20461000 10190000 10271000 5379200 3106400 2272800 10447000 4730300 5717000 3356400 1827300 1529100 1278000 525770 752210 0 0 0 0 0 0 7129 4 7405 35950;35951;35952;35953;35954 36055;36056;36057;36058;36059 36058 5 ELLEQISAFDNVPR ISELIKRPNVSPKVRELLEQISAFDNVPRK RELLEQISAFDNVPRKKAKFQNWMKNSLKV R E L P R K 1 1 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1629.8362 Q9NX58 Q9NX58 96 109 LYAR Cell growth-regulating nucleolar protein yes yes 2;3 1.2687E-07 139.86 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 0.93476 0.85782 17.335 7 Median 1.2955 1.2616 NaN 1 0 Median 1.0161 0.85782 NaN 1 0 Median 0.9119 0.90025 1.1877 2 0 Median 0.97596 0.84888 NaN 1 0 Median 0.83138 0.83712 NaN 1 0 Median 0.82793 0.71042 NaN 1 0 Median 64316000 32249000 32068000 428250 164560 263690 6834000 3314500 3519500 51130000 25847000 25284000 2823100 1341800 1481300 2264100 1142700 1121300 836530 438280 398250 7130 4160 7406 35955;35956;35957;35958;35959;35960;35961 36060;36061;36062;36063;36064;36065;36066;36067;36068;36069;36070;36071 36060 12 ELLESLPLSK DLLTSHHMLTAQEEKELLESLPLSKLCNEE AQEEKELLESLPLSKLCNEEQELLRFLFEN K E L S K L 0 0 0 0 0 0 2 0 0 0 4 1 0 0 1 2 0 0 0 0 0 0 10 0 1127.6438 Q13042;Q5T8C6;A0A3B3ISD2 Q13042 183 192 CDC16 Cell division cycle protein 16 homolog yes no 2 0.0025402 73.985 By MS/MS 1 0.73064 0.73776 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73064 0.73776 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12471000 7270200 5201100 0 0 0 0 0 0 12471000 7270200 5201100 0 0 0 0 0 0 0 0 0 7131 2779 7407 35962 36072 36072 1 ELLESNFTLVGDDGTNK NKNSRLAQAWFNTHRELLESNFTLVGDDGT LESNFTLVGDDGTNKEATSTGKLNQENEHI R E L N K E 0 0 2 2 0 0 2 2 0 0 3 1 0 1 0 1 2 0 0 1 0 0 17 0 1850.8898 Q96A33 Q96A33 173 189 CCDC47 Coiled-coil domain-containing protein 47 yes yes 2 3.9684E-06 84.718 By MS/MS By matching By MS/MS 1 1 1 1.1089 1.047 10.629 3 Median 1.2258 1.1801 NaN 1 1 Median 1.1089 0.95463 NaN 1 0 Median 1.022 1.047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7766800 3540100 4226600 2850500 1144500 1706000 1811400 862110 949340 3104800 1533500 1571300 0 0 0 0 0 0 0 0 0 7132 3592 7408 35963;35964;35965 36073;36074;36075 36075 3 ELLESNFTLVGDDGTNKEATSTGK NKNSRLAQAWFNTHRELLESNFTLVGDDGT VGDDGTNKEATSTGKLNQENEHIYNLWCSG R E L G K L 1 0 2 2 0 0 3 3 0 0 3 2 0 1 0 2 4 0 0 1 0 0 24 1 2525.2133 Q96A33 Q96A33 173 196 CCDC47 Coiled-coil domain-containing protein 47 yes yes 3 0.0066855 25.52 By MS/MS 1 0.97268 0.91627 NaN 1 Median 0.97268 0.91627 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6998100 4302600 2695400 6998100 4302600 2695400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7133 3592 7409 35966 36076 36076 1 ELLETWGSSSAIR AMDSQRRPLLLQVLKELLETWGSSSAIRHT LKELLETWGSSSAIRHTPLPQQRHVSKAVL K E L I R H 1 1 0 0 0 0 2 1 0 1 2 0 0 0 0 3 1 1 0 0 0 0 13 0 1447.7307 Q9Y4R8;H3BRS3 Q9Y4R8 338 350 TELO2 Telomere length regulation protein TEL2 homolog yes no 2 0.053273 24.855 By MS/MS 1 2.9241 2.534 NaN 1 Median NaN NaN NaN 0 0 Median 2.9241 2.534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2852400 813700 2038700 0 0 0 2852400 813700 2038700 0 0 0 0 0 0 0 0 0 0 0 0 7134 4447 7410 35967 36077 36077 1 ELLEYDLQQR DELSKIIQKVFASRKELLEYDLQQREAATK FASRKELLEYDLQQREAATKSSRTSVQPTF K E L Q R E 0 1 0 1 0 2 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 10 0 1305.6565 Q5T4S7 Q5T4S7 3827 3836 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.00039551 78.334 By matching By MS/MS By matching By matching 1 1 1 1 0.74292 0.75766 41.301 4 Median 0.94001 0.91608 NaN 1 0 Median 1.0746 0.89145 NaN 1 0 Median 0.58715 0.64395 NaN 1 0 Median 0.42793 0.37695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31280000 14677000 16603000 16056000 7011500 9044400 6925500 3171600 3753900 7177300 3859700 3317600 1121300 633830 487450 0 0 0 0 0 0 7135 3089 7411 35968;35969;35970;35971 36078 36078 1 ELLFLSNANPSLLER NWLQHEKAPTEEGKKELLFLSNANPSLLER ELLFLSNANPSLLERHCAYL__________ K E L E R H 1 1 2 0 0 0 2 0 0 0 5 0 0 1 1 2 0 0 0 0 0 0 15 0 1714.9254 P51398;V9GYA7;V9GZ61;V9GYW1;V9GYF7 P51398 379 393 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 9.4926E-07 96.015 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.87539 0.85238 25.557 4 Median 0.87177 0.86431 NaN 1 0 Median 0.96354 0.84062 NaN 1 0 Median 0.87903 0.95227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6183 0.53654 NaN 1 0 Median 16530000 8277400 8253100 5278200 2741300 2536900 7114200 3471300 3642900 3474900 1885400 1589500 0 0 0 0 0 0 663170 179400 483770 7136 2431 7412 35972;35973;35974;35975 36079;36080;36081 36081 2 ELLGQGLLLR AHNALLDIQSSGRAKELLGQGLLLRSLQER SGRAKELLGQGLLLRSLQERNQEQEKVERR K E L L R S 0 1 0 0 0 1 1 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1110.6761 Q99613;B5ME19 Q99613 644 653 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0016668 63.48 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1.2219 1.07 15.068 9 Median 1.1744 1.1532 10.594 2 0 Median 1.2113 1.0487 17.619 3 0 Median 1.0974 1.1735 15.633 2 0 Median 1.2582 1.0595 NaN 1 0 Median 1.4364 1.5203 NaN 1 0 Median NaN NaN NaN 0 0 Median 31611000 13835000 17775000 6079700 2756200 3323500 22737000 9852200 12885000 1909700 810170 1099500 309830 148590 161230 574630 268340 306300 0 0 0 7137 3757 7413 35976;35977;35978;35979;35980;35981;35982;35983;35984 36082;36083;36084;36085;36086;36087;36088 36085 7 ELLGWVSTLAR KVVEEEKQEHVEKVKELLGWVSTLARNTQG EKVKELLGWVSTLARNTQGKATSSETKEST K E L A R N 1 1 0 0 0 0 1 1 0 0 3 0 0 0 0 1 1 1 0 1 0 0 11 0 1243.6925 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 1428 1438 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.014119 37.191 By MS/MS By MS/MS 1 3 1.2994 1.1002 6.4965 4 Median 0.97046 0.9788 NaN 1 0 Median 1.3089 1.1055 1.7587 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10938000 4760800 6177200 1708200 899310 808910 9229800 3861500 5368300 0 0 0 0 0 0 0 0 0 0 0 0 7138 1220 7414 35985;35986;35987;35988 36089;36090;36091 36091 3 ELLHSQNTWLNTELK DVSVKYREKRLEQEKELLHSQNTWLNTELK ELLHSQNTWLNTELKTKTDELLALGREKGN K E L L K T 0 0 2 0 0 1 2 0 1 0 4 1 0 0 0 1 2 1 0 0 0 0 15 0 1824.937 P12270 P12270 188 202 TPR Nucleoprotein TPR yes yes 3 0.013658 23.138 By MS/MS By MS/MS 2 1 0.80368 0.88645 30.048 3 Median NaN NaN NaN 0 0 Median 1.0485 0.92205 42.372 2 0 Median 0.80368 0.88645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23918000 12745000 11174000 0 0 0 10308000 4692000 5616300 13610000 8052700 5557200 0 0 0 0 0 0 0 0 0 7139 1978 7415 35989;35990;35991 36092;36093 36093 2 ELLIFNK IKDELKKVCSTNDLKELLIFNKQQVPSGES VCSTNDLKELLIFNKQQVPSGESAILDRVA K E L N K Q 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 875.51165 P09874 P09874 263 269 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.017378 65.897 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 9 6 3 1 1.2262 1.1465 12.398 21 Median 1.0328 0.99317 5.0935 2 0 Median NaN NaN NaN 0 0 Median 1.2124 1.2428 9.3609 9 0 Median 1.3679 1.2441 5.3766 6 0 Plateau 1.1087 1.1465 17.548 3 0 Plateau 1.2303 1.0578 NaN 1 0 Median 199430000 93704000 105730000 4087900 2016400 2071500 0 0 0 180880000 85366000 95516000 7211700 2889500 4322300 6564200 3122200 3442000 684330 309290 375040 7140 1922 7416 35992;35993;35994;35995;35996;35997;35998;35999;36000;36001;36002;36003;36004;36005;36006;36007;36008;36009;36010;36011;36012 36094;36095;36096;36097;36098;36099;36100;36101;36102;36103;36104;36105 36099 12 ELLIIGGVAAR NIKQFKKYIDNPKLRELLIIGGVAARDQLS PKLRELLIIGGVAARDQLSVLENGVDIVVG R E L A R D 2 1 0 0 0 0 1 2 0 2 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1110.6761 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 239 249 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00015043 91.853 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1.2532 1.251 14.898 8 Median 1.01 0.95555 NaN 1 0 Median 1.2468 1.0786 NaN 1 0 Median 1.2323 1.2872 0.89758 2 1 Median 1.3515 1.1797 12.494 2 0 Median 1.4536 1.5511 NaN 1 0 Median 1.3852 1.2235 NaN 1 0 Median 66844000 29272000 37571000 12868000 5913700 6954600 33062000 14290000 18772000 11344000 5095700 6248800 8224700 3414000 4810600 1142800 471300 671490 201620 87575 114050 7141 135 7417 36013;36014;36015;36016;36017;36018;36019;36020 36106;36107;36108;36109;36110;36111 36108 6 ELLIQIFSTPR FDPAFDELPHYALLKELLIQIFSTPRYHPK ALLKELLIQIFSTPRYHPKSQPFVDHVFTF K E L P R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1315.75 Q8TDN6 Q8TDN6 183 193 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.00016921 79.974 By matching By MS/MS By matching 2 1 2 1.1087 0.94225 9.7949 5 Median NaN NaN NaN 0 0 Median 1.2255 1.0537 12.7 2 0 Median NaN NaN NaN 0 0 Median 1.0678 0.92047 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0886 0.92286 2.9405 2 0 Median 6036700 2898000 3138700 0 0 0 2214000 971040 1243000 0 0 0 3205900 1641800 1564100 0 0 0 616720 285120 331600 7142 3473 7418 36021;36022;36023;36024;36025 36112 36112 1 ELLITDLLPDNR KGSKQQCLMALDTFKELLITDLLPDNRKLR TFKELLITDLLPDNRKLRIFSQRPFDKLEQ K E L N R K 0 1 1 2 0 0 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1410.7718 Q03701 Q03701 291 302 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.0038153 45.161 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.88037 0.86105 6.4223 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80272 0.86105 NaN 1 0 Median 0.92814 0.82712 NaN 1 0 Median 0.80252 0.83308 10.171 2 0 Median 1.0737 0.90873 NaN 1 0 Median 1981200 1270800 710350 0 0 0 0 0 0 708140 403300 304830 84764 42227 42537 1110200 788400 321810 78055 36892 41164 7143 2710 7419 36026;36027;36028;36029;36030 36113;36114;36115 36115 3 ELLKPNASVALHK TGSNYYVRILSTIDRELLKPNASVALHKHS DRELLKPNASVALHKHSNALVDVLPPEADS R E L H K H 2 0 1 0 0 0 1 0 1 0 3 2 0 0 1 1 0 0 0 1 0 0 13 1 1418.8245 P43686 P43686 122 134 PSMC4 26S protease regulatory subunit 6B yes yes 3 0.00051174 51.135 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 0.97093 0.91768 7.8828 6 Median 0.97206 0.92827 NaN 1 0 Median 1.0143 0.93445 9.5822 2 0 Median 0.98686 1.0342 NaN 1 0 Median 0.95515 0.90722 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96979 0.84167 NaN 1 0 Median 37649000 18387000 19261000 12077000 6199700 5877100 13968000 6489500 7478600 6648800 3106900 3541900 4429100 2403000 2026000 0 0 0 525860 188050 337810 7144 2327 7420 36031;36032;36033;36034;36035;36036 36116;36117;36118;36119 36117 4 ELLLPNWQGSGSHGLTIAQR ______________________________ NWQGSGSHGLTIAQRDDGVFVQEVTQNSPA R E L Q R D 1 1 1 0 0 2 1 3 1 1 4 0 0 0 1 2 1 1 0 0 0 0 20 0 2176.1389 Q09666;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4 Q09666 9 28 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 1.2503E-31 133.47 By MS/MS By MS/MS By MS/MS By matching 4 2 6 1 1.2681 1.1096 60.486 13 Median 1.043 1.0137 112.48 4 3 Median NaN NaN NaN 0 0 Median 1.0002 1.0572 14.346 2 0 Median 1.3628 1.1809 12.478 6 0 Median 1.3204 1.3694 NaN 1 0 Median NaN NaN NaN 0 0 Median 114670000 37298000 77376000 103700000 32935000 70768000 0 0 0 6405300 2520200 3885000 3611000 1441900 2169100 954730 400860 553870 0 0 0 7145 2749 7421 36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048;36049 36120;36121;36122;36123;36124;36125 36120 6 ELLLPQDAGGPTSLGGGAGGPLLAER EASAGPAAGAAEEAKELLLPQDAGGPTSLG TSLGGGAGGPLLAERNRRTLAFRGGGGGGL K E L E R N 3 1 0 1 0 1 2 7 0 0 6 0 0 0 3 1 1 0 0 0 0 0 26 0 2445.2864 Q96DT7 Q96DT7 93 118 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 3 4.7658E-05 28.328 By MS/MS 2 0.51979 0.5598 33.23 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51979 0.5598 33.23 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2627700 1853800 773860 0 0 0 0 0 0 2627700 1853800 773860 0 0 0 0 0 0 0 0 0 7146 3628 7422 36050;36051 36126;36127;36128 36126 3 ELLLQPVTISR VERHNKPEVEVRSSKELLLQPVTISRNEKE RSSKELLLQPVTISRNEKEKVLIEGSINSV K E L S R N 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 11 0 1267.75 F8WCF6;P59998;F8WDD7;A0A0A6YYG9;H7C0A3 F8WCF6 45 55 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2 0.00011265 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 6 2 2 2 3 1.1405 0.98703 23.726 18 Median 0.95258 0.88618 26.303 3 0 Median 1.336 1.1632 27.756 6 0 Median 0.92989 0.91661 2.379 2 0 Median 1.2466 1.0986 21.982 2 0 Median 0.89587 0.93999 11.763 2 0 Median 1.217 1.0661 20.234 3 0 Median 258340000 123280000 135060000 144890000 69408000 75478000 44802000 19512000 25290000 53674000 27111000 26564000 12658000 6088800 6569700 1930000 975650 954400 387990 185160 202830 7147 1096 7423 36052;36053;36054;36055;36056;36057;36058;36059;36060;36061;36062;36063;36064;36065;36066;36067;36068;36069 36129;36130;36131;36132;36133;36134;36135;36136;36137;36138;36139 36136 11 ELLLSAIDSVNATSK NKDEKDILRCAHLQKELLLSAIDSVNATSK ELLLSAIDSVNATSKTGGYLVYCTCSITVE K E L S K T 2 0 1 1 0 0 1 0 0 1 3 1 0 0 0 3 1 0 0 1 0 0 15 0 1559.8407 P46087 P46087 493 507 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 4.6488E-10 108.56 By matching By MS/MS By matching By MS/MS 2 1 2 4 1.1625 1.1543 19.14 8 Median NaN NaN NaN 0 0 Median 1.1269 1.0019 27.152 2 0 Median 1.2236 1.3474 NaN 1 0 Median 1.3474 1.1703 31.369 2 0 Median 1.1044 1.0976 10.439 3 0 Median NaN NaN NaN 0 0 Median 32796000 15525000 17271000 0 0 0 2635400 1218200 1417200 3936100 1870200 2065900 664890 250200 414690 25560000 12186000 13374000 0 0 0 7148 2338 7424 36070;36071;36072;36073;36074;36075;36076;36077;36078 36140;36141;36142;36143;36144;36145;36146 36143 7 ELLLTGPGLEER ESWPELELAERERRRELLLTGPGLEERVRA RRRELLLTGPGLEERVRAAGGQLPPRLFTL R E L E R V 0 1 0 0 0 0 3 2 0 0 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1325.7191 Q8N1G4 Q8N1G4 23 34 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 4.4469E-15 145.89 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.95738 0.86415 38.379 6 Median 0.89614 0.84506 NaN 1 1 Median 1.0228 0.88366 NaN 1 0 Median 0.60827 0.62956 NaN 1 0 Median 1.0628 0.89003 57.818 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63329000 32349000 30980000 28077000 14225000 13852000 24168000 12100000 12068000 6235800 3640500 2595200 4847700 2382900 2464800 0 0 0 0 0 0 7149 3359 7425 36079;36080;36081;36082;36083;36084 36147;36148;36149;36150;36151 36147 5 ELLLYGR AAAASSLERETERFRELLLYGRKKDALESA ERETERFRELLLYGRKKDALESAMKNGLWG R E L G R K 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 862.49125 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1623 1629 SEC16A Protein transport protein Sec16A yes no 2 0.051961 39.218 By MS/MS 1 1.3338 1.1442 NaN 1 Median NaN NaN NaN 0 0 Median 1.3338 1.1442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 764070 283840 480240 0 0 0 764070 283840 480240 0 0 0 0 0 0 0 0 0 0 0 0 7150 1513 7426 36085 36152 36152 1 ELLNFYAWQHR SLRVLERERRKRSRKELLNFYAWQHRESKM RSRKELLNFYAWQHRESKMEHLAQLRKKFE K E L H R E 1 1 1 0 0 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 0 11 0 1475.731 Q9Y3A4 Q9Y3A4 237 247 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2;3 0.0015821 60.436 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.2736 1.3477 17.746 5 Median NaN NaN NaN 0 0 Median 1.5604 1.3477 NaN 1 0 Median 1.6213 1.5891 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1181 1.1861 19.093 2 1 Median 1.2635 1.0793 NaN 1 0 Median 10971000 4853600 6117300 0 0 0 214200 86252 127950 2399100 860940 1538200 0 0 0 7248700 3489300 3759400 1108900 417060 691810 7151 4412 7427 36086;36087;36088;36089;36090;36091 36153;36154;36155;36156;36157 36153 5 ELLNPVVEFVSHPSTTCR IIYKMMPKLKPVELRELLNPVVEFVSHPST NPVVEFVSHPSTTCREQMYNILMWIHDNYR R E L C R E 0 1 1 0 1 0 2 0 1 0 2 0 0 1 2 2 2 0 0 3 0 0 18 0 2084.0361 P78527 P78527 2453 2470 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.3339E-13 128.26 By MS/MS By MS/MS By matching 2 2 1 0.97631 0.83027 19.852 5 Median NaN NaN NaN 0 0 Median 1.0428 0.86022 5.0108 2 0 Median 0.58899 0.63661 12.994 2 1 Median 1.0891 0.94451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48284000 26385000 21899000 0 0 0 22665000 9984400 12680000 25337000 16260000 9077100 281910 140450 141470 0 0 0 0 0 0 7152 2647 7428 36092;36093;36094;36095;36096 36158;36159;36160;36161;36162;36163;36164 36159 7 ELLPLIYHHLLR ______________________________ KRRELLPLIYHHLLRAGYVRAAREVKEQSG R E L L R A 0 1 0 0 0 0 1 0 2 1 5 0 0 0 1 0 0 0 1 0 0 0 12 0 1515.8926 E7ETY2;A0A3B3IS06;H0Y8Y7;A0A2R8Y857;A0A2R8Y4M7;Q13428 Q13428 9 20 TCOF1 Treacle protein no no 2;3 2.9613E-10 131.06 By matching By matching By MS/MS By matching By matching 1 1 7 4 1 1.1744 1.0926 22.507 12 Median 0.75864 0.75855 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96828 1.0116 21.679 6 1 Median 1.5054 1.296 10.403 4 0 Median NaN NaN NaN 0 0 Median 1.1457 0.9483 NaN 1 0 Median 38078000 19718000 18361000 807780 487220 320560 361670 138400 223270 32907000 17470000 15437000 3837500 1530800 2306700 0 0 0 164660 91277 73384 7153 2816;891 7429 36097;36098;36099;36100;36101;36102;36103;36104;36105;36106;36107;36108;36109;36110 36165;36166;36167;36168;36169;36170;36171;36172 36169 8 ELLPVIGQNLR WESTVVGLRKRELLKELLPVIGQNLRFQRL ELLKELLPVIGQNLRFQRLFTECQEQLDIL K E L L R F 0 1 1 0 0 1 1 1 0 1 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1250.7347 P54198 P54198 989 999 HIRA Protein HIRA yes yes 2 0.028305 49.813 By MS/MS 1 1.0652 1.1404 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0652 1.1404 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2444800 1113400 1331400 0 0 0 0 0 0 2444800 1113400 1331400 0 0 0 0 0 0 0 0 0 7154 2481 7430 36111 36173 36173 1 ELLPVKK QLEQDHDLQAILQERELLPVKKFESEILEA LQAILQERELLPVKKFESEILEAISQNSVV R E L K K F 0 0 0 0 0 0 1 0 0 0 2 2 0 0 1 0 0 0 0 1 0 0 7 1 825.53239 Q08211 Q08211 386 392 DHX9 ATP-dependent RNA helicase A yes yes 2 0.036847 53.71 By matching By MS/MS By MS/MS By matching By matching 1 1 1 3 2 1.2949 1.2073 17.468 8 Median 1.4782 1.5721 NaN 1 0 Median 1.2711 1.1798 NaN 1 0 Median 0.92026 1.0544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1402 1.2754 25.003 3 0 Median 1.3447 1.2073 1.6751 2 0 Median 23260000 10842000 12418000 386580 179900 206690 8684200 3728700 4955500 4208100 2053800 2154300 0 0 0 7873000 4030200 3842700 2108700 849780 1258900 7155 2736 7431 36112;36113;36114;36115;36116;36117;36118;36119 36174;36175;36176 36175 3 ELLPVLISAMK QEHRVMLVNSMNTVKELLPVLISAMKIFVT NTVKELLPVLISAMKIFVTTKNSKNQGIEE K E L M K I 1 0 0 0 0 0 1 0 0 1 3 1 1 0 1 1 0 0 0 1 0 0 11 0 1212.7152 P18206 P18206 200 210 VCL Vinculin yes yes 2 0.00068471 64.654 By MS/MS By MS/MS 2 1 0.88579 0.85704 5.976 3 Plateau 0.83201 0.80937 8.0934 2 0 Median 0.95509 0.83386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14839000 7556500 7282200 12117000 6250900 5865900 2721800 1305600 1416200 0 0 0 0 0 0 0 0 0 0 0 0 7156 2057 7432 36120;36121;36122 36177;36178;36179 36177 3 ELLQDIGDTLSR SLIAQLEEKQQQPTRELLQDIGDTLSRAER PTRELLQDIGDTLSRAERIRIPEPWITPPD R E L S R A 0 1 0 2 0 1 1 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1358.7042 P14373 P14373 246 257 TRIM27 Zinc finger protein RFP yes yes 2 0.00029009 83 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1.1399 1.0075 13.727 7 Median NaN NaN NaN 0 0 Median 1.0482 0.88777 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2087 1.0081 8.2007 3 0 Median 0.89202 0.90014 NaN 1 0 Median 1.2905 1.0958 22.517 2 0 Median 16877000 7516200 9360400 0 0 0 5411400 2649600 2761700 0 0 0 6337700 2712900 3624800 1039000 530260 508700 4088500 1623400 2465100 7157 2003 7433 36123;36124;36125;36126;36127;36128;36129 36180;36181;36182;36183;36184;36185;36186 36182 7 ELLQESALIR RGVVDSEDIPLNLSRELLQESALIRKLRDV LNLSRELLQESALIRKLRDVLQQRLIKFFI R E L I R K 1 1 0 0 0 1 2 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1170.6608 I3L0K7;I3L239;Q12931 Q12931 403 412 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 2.3011E-05 145.63 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 1.244 1.1784 18.791 7 Median 1.1249 1.0599 4.7795 2 0 Median 1.3474 1.1808 0.2952 2 0 Median 1.244 1.2617 NaN 1 0 Median 0.88564 0.86228 NaN 1 0 Median 1.5032 1.5862 NaN 1 1 Median NaN NaN NaN 0 0 Median 125590000 56774000 68820000 75722000 35709000 40014000 29187000 11899000 17288000 16761000 7582800 9178600 92601 43197 49404 3830100 1539900 2290200 0 0 0 7158 2771;1269 7434 36130;36131;36132;36133;36134;36135;36136 36187;36188;36189;36190;36191;36192;36193;36194 36189 8 ELLQESALIRK RGVVDSEDIPLNLSRELLQESALIRKLRDV NLSRELLQESALIRKLRDVLQQRLIKFFID R E L R K L 1 1 0 0 0 1 2 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 11 1 1298.7558 I3L0K7;I3L239;Q12931 Q12931 403 413 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 3 0.0024071 38.634 By MS/MS 1 1.1739 1.1784 NaN 1 Median 1.1739 1.1784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7731600 3774700 3957000 7731600 3774700 3957000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7159 2771;1269 7435 36137 36195 36195 1 ELLQHPFLK NRCLEMDVEKRGSAKELLQHPFLKLAKPLS KRGSAKELLQHPFLKLAKPLSSLTPLIMAA K E L L K L 0 0 0 0 0 1 1 0 1 0 3 1 0 1 1 0 0 0 0 0 0 0 9 0 1123.639 Q13177 Q13177 493 501 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 no no 2 0.00094593 89.142 By MS/MS By matching By matching By matching 1 1 1 1 0.97315 0.87426 30.054 4 Median 0.96448 0.91193 NaN 1 0 Median 0.98819 0.83814 NaN 1 0 Median 0.98191 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60729 0.51308 NaN 1 0 Median 17659000 8907700 8751500 8869200 4203100 4666100 5144200 2614000 2530200 2459800 1425500 1034300 0 0 0 0 0 0 1186000 665210 520790 7160 2794 7436 36138;36139;36140;36141 36196 36196 1 ELLQHQFLK NRCLEMDVEKRGSAKELLQHQFLKIAKPLS KRGSAKELLQHQFLKIAKPLSSLTPLIAAA K E L L K I 0 0 0 0 0 2 1 0 1 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1154.6448 Q13153 Q13153 514 522 PAK1 Serine/threonine-protein kinase PAK 1 yes yes 2 0.00043233 128.61 By MS/MS By MS/MS 1 1 0.86641 0.7715 1.7966 2 Median 0.83761 0.78136 NaN 1 0 Median 0.89619 0.76176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28980000 15513000 13467000 24254000 13066000 11188000 4725200 2446700 2278500 0 0 0 0 0 0 0 0 0 0 0 0 7161 2791 7437 36142;36143 36197;36198;36199 36198 3 ELLQLADALGPSICMLK KETNLCLSADVSLARELLQLADALGPSICM LQLADALGPSICMLKTHVDILNDFTLDVMK R E L L K T 2 0 0 1 1 1 1 1 0 1 5 1 1 0 1 1 0 0 0 0 0 0 17 0 1870.9896 P11172;E9PFD2 P11172 265 281 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 1.6574E-14 114.82 By MS/MS 2 0.91336 0.78483 2.5462 2 Median NaN NaN NaN 0 0 Median 0.91336 0.78483 2.5462 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4109400 2006000 2103400 0 0 0 4109400 2006000 2103400 0 0 0 0 0 0 0 0 0 0 0 0 7162 1953 7438 36144;36145 36200;36201 36201 2 ELLQSFDSALQSVK LMLLTLSTRDVQESRELLQSFDSALQSVKS RELLQSFDSALQSVKSLGGNDELSATFLEM R E L V K S 1 0 0 1 0 2 1 0 0 0 3 1 0 1 0 3 0 0 0 1 0 0 14 0 1563.8144 P49792 P49792 257 270 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 9.8947E-05 85.958 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 3 1 2 1.3514 1.2424 66.57 12 Median 1.3292 1.3231 NaN 1 1 Median 1.1356 0.99006 NaN 1 0 Median 1.0704 1.1627 49.109 4 1 Median 1.374 1.2456 19.109 3 0 Median 9.7585 10.216 NaN 1 1 Median 1.4921 1.2358 4.5318 2 0 Median 85736000 33405000 52331000 5570700 2210500 3360200 3940500 1841200 2099300 59035000 25928000 33107000 1187000 513980 672980 11619000 1191200 10427000 4384900 1720500 2664400 7163 2401 7439 36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157 36202;36203;36204;36205;36206;36207;36208;36209;36210;36211 36202 10 ELLQYGLK HECLERVPENVDAAKELLQYGLKGTDLEAL ENVDAAKELLQYGLKGTDLEALLAIGKGAD K E L L K G 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 1 0 0 0 8 0 962.54368 A2RRP1 A2RRP1 601 608 NBAS Neuroblastoma-amplified sequence yes yes 2 0.059563 48.504 By MS/MS 1 0.091397 0.080483 NaN 1 Median NaN NaN NaN 0 0 Median 0.091397 0.080483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8934700 7825500 1109200 0 0 0 8934700 7825500 1109200 0 0 0 0 0 0 0 0 0 0 0 0 7164 500 7440 36158 36212 36212 1 ELLSAEENKR SEEFGENEEENVHSKELLSAEENKRAHELI NVHSKELLSAEENKRAHELIEAEGIEDIEK K E L K R A 1 1 1 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1187.6146 Q9NWH9;H7BXE3;H0YL55;H0YKU6 Q9NWH9 141 150 SLTM SAFB-like transcription modulator yes no 2;3 0.0048904 56.729 By matching By matching By MS/MS 1 1 2 0.83265 1.0771 14.891 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8252 0.94414 NaN 1 0 Median 0.83265 0.80019 NaN 1 0 Median 0.95052 1.0771 NaN 1 0 Median NaN NaN NaN 0 0 Median 4142400 2302600 1839800 0 0 0 0 0 0 829250 370610 458650 548060 280850 267210 2765100 1651200 1113900 0 0 0 7165 4149 7441 36159;36160;36161;36162 36213;36214;36215 36214 3 ELLSAHKDNLGTTIK LKPKVLLNHFMLCIRELLSAHKDNLGTTIK ELLSAHKDNLGTTIKLVIFNELSSARNPNN R E L I K L 1 0 1 1 0 0 1 1 1 1 3 2 0 0 0 1 2 0 0 0 0 0 15 1 1638.8941 Q8N201 Q8N201 429 443 INTS1 Integrator complex subunit 1 yes yes 3 0.013715 23.934 By MS/MS 1 0.7862 0.90336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7862 0.90336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2609900 1284700 1325200 0 0 0 0 0 0 2609900 1284700 1325200 0 0 0 0 0 0 0 0 0 7166 3360 7442 36163 36216 36216 1 ELLSGPNR YATMLRSIFDFSALKELLSGPNRLKIRIDA FDFSALKELLSGPNRLKIRIDAMHGVVGPY K E L N R L 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 8 0 884.47158 P36871;A0A3B3ITK7 P36871 210 217 PGM1 Phosphoglucomutase-1 yes no 2 0.0065188 70.912 By MS/MS By MS/MS 1 2 0.9307 0.901 18.689 3 Median 0.9307 0.901 NaN 1 0 Median 0.99063 0.84469 25.899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22943000 11434000 11509000 5715200 2810400 2904800 17227000 8623200 8604200 0 0 0 0 0 0 0 0 0 0 0 0 7167 2262 7443 36164;36165;36166 36217;36218 36217 2 ELLSNVDEGIYQLEK EEERQDLTTALGLVKELLSNVDEGIYQLEK ELLSNVDEGIYQLEKGARLQEIYNRMDPRA K E L E K G 0 0 1 1 0 1 3 1 0 1 3 1 0 0 0 1 0 0 1 1 0 0 15 0 1748.8832 V9GYM8;Q92974 V9GYM8 469 483 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 8.5653E-05 81.475 By MS/MS By matching 2 1 1.4895 1.3172 8.0983 3 Plateau NaN NaN NaN 0 0 Median 1.4877 1.297 2.1838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3171 1.1302 NaN 1 0 Median 3093300 1287200 1806100 0 0 0 2906700 1226400 1680300 0 0 0 0 0 0 0 0 0 186590 60796 125800 7168 4562 7444 36167;36168;36169 36219 36219 1 ELLSNWYHFLVTR LKIMLGDEAALLEQKELLSNWYHFLVTRLL QKELLSNWYHFLVTRLLYSNPTVKPIDLHY K E L T R L 0 1 1 0 0 0 1 0 1 0 3 0 0 1 0 1 1 1 1 1 0 0 13 0 1676.8675 Q9BW27;J3KT10;J3QL54;J3QLD4;J3QLV0;J3KTC7 Q9BW27 299 311 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.010506 35.959 By MS/MS 1 1.4885 1.2831 NaN 1 Median NaN NaN NaN 0 0 Median 1.4885 1.2831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1346300 554620 791670 0 0 0 1346300 554620 791670 0 0 0 0 0 0 0 0 0 0 0 0 7169 3861 7445 36170 36220 36220 1 ELLSQLEETR QLQQKVCDTLQGENKELLSQLEETRHLYHS QGENKELLSQLEETRHLYHSSQNELAKLES K E L T R H 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1216.6299 Q14789 Q14789 2288 2297 GOLGB1 Golgin subfamily B member 1 yes yes 2 8.7128E-05 124.23 By MS/MS By MS/MS 1 1 0.78649 0.70015 42.969 2 Median 0.9647 0.94874 NaN 1 1 Median 0.6412 0.5167 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22633000 14192000 8441000 9203700 4331500 4872200 13430000 9860900 3568700 0 0 0 0 0 0 0 0 0 0 0 0 7170 2900 7446 36171;36172 36221;36222 36221 2 ELLTEFGYK VQDSEMVELVELEIRELLTEFGYKGEETPV VELEIRELLTEFGYKGEETPVIVGSALCAL R E L Y K G 0 0 0 0 0 0 2 1 0 0 2 1 0 1 0 0 1 0 1 0 0 0 9 0 1098.5597 P49411 P49411 201 209 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.0040235 61.962 By MS/MS 2 1.1756 1.1255 15.185 2 Median 1.1756 1.1255 15.185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10787000 4509900 6277300 10787000 4509900 6277300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7171 2382 7447 36173;36174 36223 36223 1 ELLTEFGYKGEETPVIVGSALCALEGR VQDSEMVELVELEIRELLTEFGYKGEETPV TPVIVGSALCALEGRDPELGLKSVQKLLDA R E L G R D 2 1 0 0 1 0 5 4 0 1 4 1 0 1 1 1 2 0 1 2 0 0 27 1 2937.4794 P49411 P49411 201 227 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.013703 17.158 By MS/MS 1 0.77403 0.70681 NaN 1 Median NaN NaN NaN 0 0 Median 0.77403 0.70681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 904860 440770 464090 0 0 0 904860 440770 464090 0 0 0 0 0 0 0 0 0 0 0 0 7172 2382 7448 36175 36224 36224 1 ELLTLDEK WRVKFTLAKIRKAARELLTLDEKDPRRLFE KIRKAARELLTLDEKDPRRLFEGNALLRRL R E L E K D 0 0 0 1 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 959.51753 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 59 66 RPS9 40S ribosomal protein S9 yes no 2 0.003577 87.754 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 2 3 1.1665 0.9247 28.316 8 Median 1.2321 1.1484 NaN 1 0 Median 1.0606 0.8934 NaN 1 0 Median 2.0865 2.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84969 0.87711 2.0159 2 0 Median 1.2816 0.9571 7.6432 3 0 Plateau 81106000 40187000 40919000 14656000 6536300 8119600 3799500 1825400 1974100 2311500 645090 1666400 0 0 0 44143000 24212000 19931000 16196000 6967700 9228400 7173 2345 7449 36176;36177;36178;36179;36180;36181;36182;36183 36225;36226;36227;36228;36229;36230 36226 6 ELLTLDEKDPR WRVKFTLAKIRKAARELLTLDEKDPRRLFE KAARELLTLDEKDPRRLFEGNALLRRLVRI R E L P R R 0 1 0 2 0 0 2 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 1 1327.6983 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 59 69 RPS9 40S ribosomal protein S9 yes no 2 0.00084371 113.62 By MS/MS By MS/MS By MS/MS 1 1 1 1.0035 0.9186 10.033 3 Median 0.87667 0.91023 NaN 1 1 Median 1.0035 0.9186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2331 1.0878 NaN 1 0 Median 116890000 60248000 56637000 69207000 37179000 32028000 41074000 20411000 20663000 0 0 0 0 0 0 0 0 0 6604600 2658500 3946100 7174 2345 7450 36184;36185;36186 36231;36232;36233;36234;36235 36235 5 ELLTLDEKDPRR WRVKFTLAKIRKAARELLTLDEKDPRRLFE AARELLTLDEKDPRRLFEGNALLRRLVRIG R E L R R L 0 2 0 2 0 0 2 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 12 2 1483.7995 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 59 70 RPS9 40S ribosomal protein S9 yes no 3 0.00018846 74.76 By MS/MS By MS/MS 1 1 1.009 0.97267 5.5201 2 Median 1.008 1.0114 NaN 1 0 Median 1.0101 0.93544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39435000 19916000 19519000 22172000 11158000 11014000 17263000 8757700 8505600 0 0 0 0 0 0 0 0 0 0 0 0 7175 2345 7451 36187;36188 36236;36237;36238 36238 3 ELLTPQQHYDWGLR KVLSRKLVAIFNLSRELLTPQQHYDWGLRA RELLTPQQHYDWGLRALKTVLRGSGNLLRQ R E L L R A 0 1 0 1 0 2 1 1 1 0 3 0 0 0 1 0 1 1 1 0 0 0 14 0 1754.874 Q8NCM8 Q8NCM8 1854 1867 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.00011886 70.332 By MS/MS 1 0.7115 0.69968 NaN 1 Median 0.7115 0.69968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9240400 5065300 4175100 9240400 5065300 4175100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7176 3418 7452 36189 36239 36239 1 ELLTSFGPLK FIGGLPNYLNDDQVKELLTSFGPLKAFNLV DDQVKELLTSFGPLKAFNLVKDSATGLSKG K E L L K A 0 0 0 0 0 0 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 10 0 1103.6227 P26368;K7ENG2 P26368 277 286 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.00038325 79.906 By MS/MS By MS/MS 1 1 1.0333 0.93576 4.7592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94539 0.90479 NaN 1 0 Median 1.1295 0.96778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207480000 103500000 103980000 0 0 0 0 0 0 186610000 94311000 92295000 20875000 9187900 11687000 0 0 0 0 0 0 7177 2143 7453 36190;36191 36240;36241;36242;36243;36244 36240 5 ELLTTMGDR FDEEATGTIQEDYLRELLTTMGDRFTDEEV QEDYLRELLTTMGDRFTDEEVDELYREAPI R E L D R F 0 1 0 1 0 0 1 1 0 0 2 0 1 0 0 0 2 0 0 0 0 0 9 0 1034.5066 J3QRS3;P19105;O14950;P24844 J3QRS3 130 138 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 0.00047799 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 1.0734 0.94 22.871 11 Median 1.3579 1.3247 6.1334 2 0 Median 1.1353 0.94 9.3539 3 0 Median 0.78483 0.75417 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80103 0.84576 30.85 2 1 Median 0.98753 0.77319 16.598 3 0 Median 102540000 46791000 55745000 36361000 14948000 21413000 45049000 21001000 24049000 9023900 5002600 4021300 0 0 0 3382900 2021200 1361700 8719300 3818900 4900400 7178 1352;2127 7454;7455 36192;36193;36194;36195;36196;36197;36198;36199;36200;36201;36202 36245;36246;36247;36248;36249;36250;36251;36252;36253;36254 36246 444;890 10 ELLTTMGDRFTDEEVDELYR FDEEATGTIQEDYLRELLTTMGDRFTDEEV MGDRFTDEEVDELYREAPIDKKGNFNYIEF R E L Y R E 0 2 0 3 0 0 4 1 0 0 3 0 1 1 0 0 3 0 1 1 0 0 20 1 2431.1213 J3QRS3;P19105;O14950 J3QRS3 130 149 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 3 1.8181E-07 56.54 By MS/MS By matching 2 1 0.87296 0.98105 32.113 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84206 0.94634 5.0952 2 0 Median 1.9429 1.6447 NaN 1 0 Median 19215000 9948300 9266300 0 0 0 0 0 0 0 0 0 0 0 0 18060000 9786900 8272800 1154800 161360 993480 7179 1352 7456;7457 36203;36204;36205 36255;36256;36257 36257 444 3 ELLVHLDDPER NAKSYYQSSVQYLYRELLVHLDDPERAIQD YLYRELLVHLDDPERAIQDAILEVLKEGSG R E L E R A 0 1 0 2 0 0 2 0 1 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1334.683 Q86Y56;H0Y650;E9PGY2 Q86Y56 793 803 DNAAF5 Dynein assembly factor 5, axonemal yes no 3 0.0076399 32.159 By MS/MS By matching 1 1 0.75938 0.71663 3.1044 2 Median 0.74459 0.73253 NaN 1 0 Median 0.77447 0.70107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2749600 1538400 1211300 2354600 1382900 971700 395000 155430 239570 0 0 0 0 0 0 0 0 0 0 0 0 7180 3305 7458 36206;36207 36258 36258 1 ELLVLPIYANLPSDMQAR EMLQDRCRRLGSKIRELLVLPIYANLPSDM VLPIYANLPSDMQARIFQPTPPGARKVVVA R E L A R I 2 1 1 1 0 1 1 0 0 1 4 0 1 0 2 1 0 0 1 1 0 0 18 0 2042.087 O60231;A0A140T947;Q5SQH5;A0A140T8Y5;A0A140T9T4 O60231 641 658 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.00046458 38.634 By MS/MS By matching By MS/MS 1 2 2 0.66298 0.67003 17.801 5 Median 0.66298 0.67003 NaN 1 0 Median 0.87258 0.7798 18.186 2 0 Median 0.55685 0.58931 12.297 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2823300 1708200 1115100 993950 548900 445050 408860 225180 183680 1420500 934130 486380 0 0 0 0 0 0 0 0 0 7181 1605 7459 36208;36209;36210;36211;36212 36259;36260;36261 36260 3 ELLVPLTSSMYVPGK AKDCLNVLNKSNEGKELLVPLTSSMYVPGK ELLVPLTSSMYVPGKLHDVEHVLIDVGTGY K E L G K L 0 0 0 0 0 0 1 1 0 0 3 1 1 0 2 2 1 0 1 2 0 0 15 0 1632.8797 Q99471 Q99471 61 75 PFDN5 Prefoldin subunit 5 yes yes 2 0.0010697 43.282 By MS/MS By MS/MS By MS/MS 2 2 1 0.87182 0.80883 7.626 5 Median 0.85268 0.80401 2.8158 2 0 Median 0.86371 0.75221 10.263 2 0 Median 0.87523 0.85676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42910000 23361000 19549000 37467000 20581000 16886000 2232700 1111700 1121000 3210900 1668300 1542600 0 0 0 0 0 0 0 0 0 7182 3747 7460;7461 36213;36214;36215;36216;36217 36262;36263;36264;36265;36266;36267 36267 1819 6 ELLYGGTSPTAETILK APNPAKATVTAMIARELLYGGTSPTAETIL LLYGGTSPTAETILKNNISSGHVPHGPLTR R E L L K N 1 0 0 0 0 0 2 2 0 1 3 1 0 0 1 1 3 0 1 0 0 0 16 0 1691.8982 O95793;A0A087X1A5;Q5JW30 O95793 458 473 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 7.7485E-05 75.695 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 4 1 2 1 1 1.0305 0.88464 16.638 12 Median 0.81487 0.77064 19.274 3 0 Median 0.98293 0.85169 6.4836 4 0 Median 1.0833 1.0783 NaN 1 0 Median 0.92299 0.81141 28.643 2 0 Median 1.2051 1.1481 NaN 1 0 Median 1.098 0.92298 NaN 1 0 Median 39828000 18800000 21028000 21768000 10549000 11219000 3257100 1652500 1604600 6171800 2793500 3378300 337230 159370 177860 6790000 2902100 3887900 1504600 743930 760650 7183 1794 7462 36218;36219;36220;36221;36222;36223;36224;36225;36226;36227;36228;36229 36268;36269;36270;36271;36272;36273;36274;36275 36268 8 ELMAWNQAENR VLAERKALKDAAEHRELMAWNQAENRRLHE AEHRELMAWNQAENRRLHELRIARLRQEER R E L N R R 2 1 2 0 0 1 2 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 11 0 1360.6194 Q9BYN8 Q9BYN8 104 114 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 3.7958E-08 136.57 By MS/MS 2 1.0291 0.97509 1.5388 2 Median 1.0291 0.97509 1.5388 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20643000 9166800 11476000 20643000 9166800 11476000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7184 3894 7463 36230;36231 36276;36277 36277 2 ELMAWNQAENRR VLAERKALKDAAEHRELMAWNQAENRRLHE EHRELMAWNQAENRRLHELRIARLRQEERE R E L R R L 2 2 2 0 0 1 2 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 12 1 1516.7205 Q9BYN8 Q9BYN8 104 115 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 3 0.0039507 51.841 By MS/MS By MS/MS 1 1 1.1764 1.1209 17.013 2 Median 0.92976 0.99385 NaN 1 1 Median 1.4886 1.2642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10842000 5307100 5535000 8108100 4140300 3967800 2734100 1166900 1567300 0 0 0 0 0 0 0 0 0 0 0 0 7185 3894 7464 36232;36233 36278;36279 36278 2 ELMEEKKEEITGTLR ARIGITNHDEYSLVRELMEEKKEEITGTLR ELMEEKKEEITGTLRKDKTLLRDEKKMEKL R E L L R K 0 1 0 0 0 0 5 1 0 1 2 2 1 0 0 0 2 0 0 0 0 0 15 2 1804.9241 Q9Y490 Q9Y490 132 146 TLN1 Talin-1 yes yes 3 2.9181E-10 107.07 By MS/MS By MS/MS 1 1 1.0374 1.1009 20.917 2 Median 0.89829 0.94957 NaN 1 0 Median 1.1981 1.2764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26895000 12230000 14665000 14460000 7213100 7246400 12436000 5017300 7418500 0 0 0 0 0 0 0 0 0 0 0 0 7186 4441 7465 36234;36235 36280;36281;36282 36282 3 ELMELLK GQSGLNLSKNFLDPKELMELLKSRDYEREI SKNFLDPKELMELLKSRDYEREIKGSREKV K E L L K S 0 0 0 0 0 0 2 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 7 0 874.48339 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7;Q9NW36 F6XU50 646 652 HELLS Lymphoid-specific helicase yes no 2 0.018329 63.148 By matching By MS/MS By matching By matching 1 1 1 2 1.1283 1.2198 16.925 5 Median NaN NaN NaN 0 0 Median 1.3741 1.2382 NaN 1 0 Median 1.1283 1.2198 NaN 1 0 Median 1.0542 0.93232 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2988 1.1209 25.217 2 0 Median 3143900 1430500 1713400 0 0 0 260630 118850 141770 2529000 1151400 1377600 136220 62483 73742 0 0 0 218090 97781 120310 7187 211 7466 36236;36237;36238;36239;36240 36283;36284 36283 2 ELMGEEILGASLSAPLTSYK YQGFTKDNGVVPVVKELMGEEILGASLSAP EILGASLSAPLTSYKVIYVLPMLTIKEDKG K E L Y K V 2 0 0 0 0 0 3 2 0 1 4 1 1 0 1 3 1 0 1 0 0 0 20 0 2108.0711 Q9P2J5 Q9P2J5 351 370 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 0.0081511 22.221 By MS/MS By matching 1 1 0.95596 1.0045 1.6417 2 Median 1.0016 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91238 0.99292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 938630 458790 479830 823800 382700 441100 0 0 0 114830 76094 38731 0 0 0 0 0 0 0 0 0 7188 4224 7467 36241;36242 36285 36285 1 ELMGGIGK LFGTFSCLRIGMRGRELMGGIGKTMMQSGG RIGMRGRELMGGIGKTMMQSGGTFGTFMAI R E L G K T 0 0 0 0 0 0 1 3 0 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 803.42112 P60602 P60602 51 58 ROMO1 Reactive oxygen species modulator 1 yes yes 2 0.02179 45.394 By MS/MS 1 1.4019 1.1508 NaN 1 Median NaN NaN NaN 0 0 Median 1.4019 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5268000 2103400 3164500 0 0 0 5268000 2103400 3164500 0 0 0 0 0 0 0 0 0 0 0 0 7189 2527 7468 36243 36286;36287 36287 2 ELMLHAADVEALQAAK EQAKIAVEAQNKYERELMLHAADVEALQAA LMLHAADVEALQAAKEQVSKMASVRQHLEE R E L A K E 5 0 0 1 0 1 2 0 1 0 3 1 1 0 0 0 0 0 0 1 0 0 16 0 1708.8818 P12270 P12270 1085 1100 TPR Nucleoprotein TPR yes yes 2;3 6.2356E-51 179.19 By MS/MS By matching By MS/MS By matching By matching 1 1 5 4 1 0.96553 1.0315 14.532 12 Median 0.91781 0.88233 NaN 1 1 Median 0.97448 0.85457 NaN 1 0 Median 0.91182 1.0039 10.87 5 1 Median 1.2653 1.1624 8.8073 4 0 Median 1.033 1.0952 NaN 1 0 Median NaN NaN NaN 0 0 Median 71760000 37793000 33966000 5903200 2686100 3217200 1681000 927660 753370 60582000 32296000 28286000 1643600 698300 945290 1950400 1185900 764470 0 0 0 7190 1978 7469;7470 36244;36245;36246;36247;36248;36249;36250;36251;36252;36253;36254;36255 36288;36289;36290;36291;36292 36290 756 5 ELMNLTGTIPVPYR KPVLDSYVFNDGSSRELMNLTGTIPVPYRG RELMNLTGTIPVPYRGNTYNIPICLWLLDT R E L Y R G 0 1 1 0 0 0 1 1 0 1 2 0 1 0 2 0 2 0 1 1 0 0 14 0 1602.844 F5H442;Q99816 F5H442 51 64 TSG101 Tumor susceptibility gene 101 protein yes no 2 3.8342E-05 85.377 By MS/MS By MS/MS By MS/MS 1 1 1 0.91608 0.9223 42.575 3 Median 0.68351 0.68194 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91608 0.9223 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5676 1.5804 NaN 1 0 Median NaN NaN NaN 0 0 Median 5586100 2940000 2646200 2817400 1584400 1233100 0 0 0 1795900 1021800 774110 0 0 0 972790 333790 639000 0 0 0 7191 1030 7471 36256;36257;36258 36293;36294;36295 36293 3 ELMQVVLAR WYLATSDKERKKMVRELMQVVLARKPKMCS RKKMVRELMQVVLARKPKMCSFLEWRDLKV R E L A R K 1 1 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 9 0 1057.5954 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 33 41 AP1S1 AP-1 complex subunit sigma-1A yes no 2 0.0027284 72.138 By MS/MS By matching By MS/MS 1 1 1 1.2519 1.2775 13.752 3 Plateau 1.1899 1.1947 NaN 1 0 Median 1.1539 0.98058 NaN 1 0 Median 1.259 1.2775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13582000 5302500 8279200 4477600 2164700 2312900 3375500 970070 2405500 5728600 2167800 3560800 0 0 0 0 0 0 0 0 0 7192 403 7472 36259;36260;36261 36296;36297 36297 1 ELMTHHVHTYGLIMGGSNR SPTRELAMQTFGVLKELMTHHVHTYGLIMG HHVHTYGLIMGGSNRSAEAQKLGNGINIIV K E L N R S 0 1 1 0 0 0 1 3 3 1 2 0 2 0 0 1 2 0 1 1 0 0 19 0 2152.0306 Q9NVP1 Q9NVP1 273 291 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3;4 9.5068E-27 149.73 By MS/MS By matching By MS/MS By matching 6 1 6 1 1.158 1.1423 15.806 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1316 1.1423 15.902 6 1 Median 1.5945 1.3737 NaN 1 0 Median 1.1052 1.1102 15.583 6 0 Median 1.3775 1.1211 NaN 1 0 Median 203030000 93049000 109980000 0 0 0 0 0 0 110660000 53124000 57534000 1625000 655910 969090 88784000 38469000 50315000 1966600 800290 1166300 7193 4137 7473;7474 36262;36263;36264;36265;36266;36267;36268;36269;36270;36271;36272;36273;36274;36275 36298;36299;36300;36301;36302;36303;36304;36305;36306;36307;36308;36309 36304 1889;1890 12 ELNDLAR ______________________________ MALKRIHKELNDLARDPPAQCSAGPVGDDM K E L A R D 1 1 1 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 829.42938 P62837;A0A0A0MQU3 P62837 9 15 UBE2D2 Ubiquitin-conjugating enzyme E2 D2 yes no 2 0.037371 46.37 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3135 1.272 26.236 4 Median 1.6068 1.5946 NaN 1 0 Median 1.4232 1.3182 NaN 1 0 Median 1.2122 1.2275 NaN 1 0 Median 1.0703 0.85215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5476700 2497700 2978900 1224900 507360 717500 659900 209860 450040 3194800 1580000 1614800 397120 200490 196630 0 0 0 0 0 0 7194 2599 7475 36276;36277;36278;36279 36310;36311;36312 36311 3 ELNEALELK FTLQIRGRERFEMFRELNEALELKDAQAGK RFEMFRELNEALELKDAQAGKEPGGSRAHS R E L L K D 1 0 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1057.5655 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1 A0A0U1RQC9 304 312 TP53 Cellular tumor antigen p53 yes no 2 0.00045587 103.56 By MS/MS By MS/MS By MS/MS 1 2 1 0.84185 0.78231 2.1501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87877 0.7943 NaN 1 1 Median 0.80648 0.77051 NaN 1 0 Median NaN NaN NaN 0 0 Median 90110000 47736000 42374000 0 0 0 0 0 0 0 0 0 69480000 36937000 32543000 20630000 10799000 9830900 0 0 0 7195 299 7476 36280;36281;36282;36283 36313;36314;36315;36316;36317;36318 36317 6 ELNEALELKDAQAGKEPGGSR FTLQIRGRERFEMFRELNEALELKDAQAGK ELKDAQAGKEPGGSRAHSRECQTLSPGDPD R E L S R A 3 1 1 1 0 1 4 3 0 0 3 2 0 0 1 1 0 0 0 0 0 0 21 2 2211.1131 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1 A0A0U1RQC9 304 324 TP53 Cellular tumor antigen p53 yes no 3;4 1.9146E-26 144.33 By matching By MS/MS 1 4 0.71777 0.82688 15.298 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87617 0.95654 NaN 1 0 Median 0.66764 0.76642 12.983 4 1 Median NaN NaN NaN 0 0 Median 75550000 42627000 32923000 0 0 0 0 0 0 0 0 0 9781800 5430700 4351100 65768000 37196000 28572000 0 0 0 7196 299 7477 36284;36285;36286;36287;36288 36319;36320;36321 36320 3 ELNEDKLEK NATYCRLAQFIGNRRELNEDKLEKLEELTM FIGNRRELNEDKLEKLEELTMDGAKAKAIL R E L E K L 0 0 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1116.5663 O00567;A0A494C128;Q5JXT2 O00567 222 230 NOP56 Nucleolar protein 56 yes no 2 0.015469 66.27 By matching By MS/MS By matching By matching 1 2 1 1 1.0162 1.1182 16.429 5 Median NaN NaN NaN 0 0 Median 1.3834 1.2977 NaN 1 0 Median 0.96385 1.0439 10.414 2 0 Median 1.211 1.1182 NaN 1 0 Median 0.80615 0.84224 NaN 1 0 Median NaN NaN NaN 0 0 Median 25519000 12036000 13483000 0 0 0 2078100 841060 1237000 21656000 10292000 11364000 687120 310350 376770 1097400 592140 505240 0 0 0 7197 1472 7478 36289;36290;36291;36292;36293 36322;36323 36323 2 ELNEDKLEKLEELTMDGAK NATYCRLAQFIGNRRELNEDKLEKLEELTM DKLEKLEELTMDGAKAKAILDASRSSMGMD R E L A K A 1 0 1 2 0 0 5 1 0 0 4 3 1 0 0 0 1 0 0 0 0 0 19 2 2204.0882 O00567;A0A494C128;Q5JXT2 O00567 222 240 NOP56 Nucleolar protein 56 yes no 3 5.249E-05 40.179 By MS/MS By MS/MS 1 3 0.85851 0.94429 7.9355 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8951 1.0348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82342 0.90092 6.5218 3 0 Median NaN NaN NaN 0 0 Median 13026000 6923400 6102300 0 0 0 0 0 0 3408600 1820900 1587800 0 0 0 9617100 5102600 4514500 0 0 0 7198 1472 7479 36294;36295;36296;36297 36324;36325;36326 36325 3 ELNEDVSADVEER LHQDCLVLATAKHSRELNEDVSADVEERFH SRELNEDVSADVEERFHLGLFTDRATLYRM R E L E R F 1 1 1 2 0 0 4 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1503.6689 Q8TEQ6 Q8TEQ6 878 890 GEMIN5 Gem-associated protein 5 yes yes 2 3.3234E-08 123.8 By MS/MS By MS/MS 1 1 0.95667 0.85484 0.93844 2 Median 0.90106 0.84919 NaN 1 1 Median 1.0157 0.86054 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10552000 5811300 4741100 7668400 4332300 3336000 2884000 1479000 1405100 0 0 0 0 0 0 0 0 0 0 0 0 7199 3478 7480 36298;36299 36327;36328 36327 2 ELNELVSAIEEHFFQPQK LCAPPGNSDPEQLKKELNELVSAIEEHFFQ ELVSAIEEHFFQPQKYNLQPKAD_______ K E L Q K Y 1 0 1 0 0 2 4 0 1 1 2 1 0 2 1 1 0 0 0 1 0 0 18 0 2157.0742 Q96G03 Q96G03 587 604 PGM2 Phosphoglucomutase-2 yes yes 3 0.056177 9.1638 By MS/MS 1 0.94541 0.91428 NaN 1 Median 0.94541 0.91428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1861500 940660 920820 1861500 940660 920820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7200 3652 7481 36300 36329 36329 1 ELNEMQAQIAEESQIR SEREKLTQQMIKYQKELNEMQAQIAEESQI LNEMQAQIAEESQIRIELQMTLDSKDSDIE K E L I R I 2 1 1 0 0 3 4 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0 16 0 1887.8996 O75116;E9PF63;Q14DU5 O75116 1087 1102 ROCK2 Rho-associated protein kinase 2 yes no 2 7.8873E-11 116.24 By MS/MS By MS/MS 2 1 1.1039 1.0715 23.973 3 Plateau 1.0918 1.0616 1.3159 2 2 Median NaN NaN NaN 0 0 Median 0.63904 0.7011 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10013000 5075500 4937100 7306700 3449400 3857300 0 0 0 2705900 1626100 1079800 0 0 0 0 0 0 0 0 0 7201 1644 7482 36301;36302;36303 36330;36331;36332 36332 3 ELNEVLQSR DKYWTKIHLDNLDKRELNEVLQSRYPSLLA DNLDKRELNEVLQSRYPSLLAVVDHLLDIY R E L S R Y 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1086.5669 Q9NU22 Q9NU22 480 488 MDN1 Midasin yes yes 2 0.00073077 101.64 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1.2737 1.0856 35.686 7 Median NaN NaN NaN 0 0 Median 0.58604 0.47092 NaN 1 1 Median 1.1412 1.1562 18.617 2 0 Median 1.2087 1.0305 10.417 2 0 Median 1.2759 1.3737 NaN 1 0 Median 1.3018 1.0856 NaN 1 1 Median 91948000 44797000 47151000 0 0 0 14698000 9606500 5091200 26338000 11920000 14419000 47181000 21479000 25702000 2248200 1108400 1139900 1483100 683200 799890 7202 4112 7483 36304;36305;36306;36307;36308;36309;36310 36333;36334;36335;36336;36337 36334 5 ELNFSSTEQMEK ARVPKKILKCKAVSRELNFSSTEQMEKFRL VSRELNFSSTEQMEKFRLEQKVYFKGQCLE R E L E K F 0 0 1 0 0 1 3 0 0 0 1 1 1 1 0 2 1 0 0 0 0 0 12 0 1441.6395 O43924;B8ZZK5;C9IZ52 O43924 62 73 PDE6D Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta yes no 2 6.42E-06 118.4 By MS/MS By matching By MS/MS 1 1 1 0.99217 0.88043 9.1723 3 Median 0.84712 0.80052 NaN 1 0 Median 1.0194 0.88043 NaN 1 0 Median 0.99217 0.96166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14775000 7652500 7122600 8062500 4218100 3844300 2081200 967840 1113400 4631400 2466500 2164800 0 0 0 0 0 0 0 0 0 7203 1601 7484 36311;36312;36313 36338;36339;36340 36338 3 ELNFWAK FLPFCHSELIQLVNKELNFWAKRAKQRHNI ELIQLVNKELNFWAKRAKQRHNITLLWDRE K E L A K R 1 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 7 0 906.45995 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 588 594 CLPB Caseinolytic peptidase B protein homolog yes no 2 0.048488 40.921 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.2241 1.1838 11.203 5 Median 1.2241 1.1838 NaN 1 0 Median 1.4334 1.2547 NaN 1 0 Median 1.0471 1.0773 NaN 1 0 Median 1.496 1.313 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1555 0.99741 NaN 1 0 Median 5586100 2690200 2895900 1844100 904310 939810 900580 360110 540470 2669500 1354800 1314600 98222 41836 56385 0 0 0 73708 29104 44604 7204 1181 7485 36314;36315;36316;36317;36318 36341 36341 1 ELNITAAK LLELEMNSDLKAQLRELNITAAKEIEVGGG DLKAQLRELNITAAKEIEVGGGRKAIIIFV R E L A K E 2 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 858.48108 P62081;A0A2R8Y623;B5MCP9 P62081 42 49 RPS7 40S ribosomal protein S7 yes no 2 0.0033829 98.523 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 2 2 1.2799 1.0592 9.9241 9 Median 1.0299 0.95235 NaN 1 0 Median 1.1847 0.98888 10.331 3 1 Median 1.1798 1.1062 NaN 1 0 Median 1.454 1.1958 6.9447 2 0 Median NaN NaN NaN 0 0 Median 1.2943 1.0488 1.3944 2 0 Median 83763000 38534000 45230000 36372000 17792000 18581000 13123000 6037200 7086000 22743000 9894000 12849000 5309200 2247600 3061600 0 0 0 6215800 2563200 3652600 7205 2568 7486 36319;36320;36321;36322;36323;36324;36325;36326;36327;36328 36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357 36347 16 ELNLVLSVR LDSLMSVEVRQTLERELNLVLSVREVRQLT RQTLERELNLVLSVREVRQLTLRKLQELSS R E L V R E 0 1 1 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 1041.6182 P49327;A0A0U1RQF0 P49327 2169 2177 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0027536 69.825 By MS/MS By MS/MS 1 4 1.301 1.1013 15.089 5 Median 1.1188 1.0545 NaN 1 0 Median 1.3409 1.1191 16.65 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71213000 30965000 40248000 7602900 4583800 3019100 63610000 26381000 37229000 0 0 0 0 0 0 0 0 0 0 0 0 7206 2377 7487 36329;36330;36331;36332;36333 36358;36359;36360;36361;36362;36363 36362 6 ELNMIIMLPDETTDLR GEIFTQILVLPYVGKELNMIIMLPDETTDL LNMIIMLPDETTDLRTVEKELTYEKFVEWT K E L L R T 0 1 1 2 0 0 2 0 0 2 3 0 2 0 1 0 2 0 0 0 0 0 16 0 1902.9431 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12 A0A024QZX5 231 246 SERPINB6 Serpin B6 yes no 2 0.0060531 32.062 By MS/MS 1 1.0048 0.86022 NaN 1 Median NaN NaN NaN 0 0 Median 1.0048 0.86022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1298900 688900 610010 0 0 0 1298900 688900 610010 0 0 0 0 0 0 0 0 0 0 0 0 7207 1 7488 36334 36364 36364 1 ELNPEEGEMVEEK KPHIDKLLKIGPQLKELNPEEGEMVEEKYQ LKELNPEEGEMVEEKYQKAENMYAQIKEEV K E L E K Y 0 0 1 0 0 0 6 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 13 0 1531.6712 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5953 5965 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 7.441E-07 112.13 By MS/MS By MS/MS By matching 1 1 1 1.1825 1.0333 20.345 3 Median 0.76677 0.76226 NaN 1 0 Median 1.1825 1.0333 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2022 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11429000 5586700 5842000 5077200 2598300 2478800 5632500 2695400 2937100 0 0 0 719040 293000 426040 0 0 0 0 0 0 7208 1220 7489 36335;36336;36337 36365;36366;36367;36368 36367 4 ELNQVMEQLGDAR EEVEMAKRRIDEINKELNQVMEQLGDARID NKELNQVMEQLGDARIDRQESSRQQRKAEI K E L A R I 1 1 1 1 0 2 2 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 13 0 1501.7195 Q14683;G8JLG1 Q14683 476 488 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 3.9044E-05 125.22 By MS/MS By matching By matching 1 1 1 0.93821 1.0318 9.5188 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93821 1.0318 NaN 1 0 Median 1.2424 1.0952 NaN 1 0 Median 0.87542 0.90893 NaN 1 0 Median NaN NaN NaN 0 0 Median 16310000 8077800 8231700 0 0 0 0 0 0 8557800 4277200 4280600 1061900 469560 592350 6689900 3331100 3358800 0 0 0 7209 2889 7490 36338;36339;36340 36369 36369 1 ELNQWEALTEYGQSK PEYQLWEDHWIRCSKELNQWEALTEYGQSK ELNQWEALTEYGQSKGHINPYLVLECAWRV K E L S K G 1 0 1 0 0 2 3 1 0 0 2 1 0 0 0 1 1 1 1 0 0 0 15 0 1794.8424 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2812 2826 TRRAP Transformation/transcription domain-associated protein yes no 2;3 1.3169E-05 75.695 By MS/MS 2 0.92273 0.99681 6.8814 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92273 0.99681 6.8814 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12152000 6089000 6062600 0 0 0 0 0 0 12152000 6089000 6062600 0 0 0 0 0 0 0 0 0 7210 991 7491 36341;36342 36370;36371 36370 2 ELNSSPQPYLVPFLK DGKIEAEDFTSRLYRELNSSPQPYLVPFLK ELNSSPQPYLVPFLKRSLPALRQLTPDSAA R E L L K R 0 0 1 0 0 1 1 0 0 0 3 1 0 1 3 2 0 0 1 1 0 0 15 0 1730.9243 O00268;A0A0G2JRY5 O00268 644 658 TAF4 Transcription initiation factor TFIID subunit 4 yes no 2 0.039043 24.343 By MS/MS 1 0.67233 0.72476 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67233 0.72476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2047500 1165300 882230 0 0 0 0 0 0 2047500 1165300 882230 0 0 0 0 0 0 0 0 0 7211 1453 7492 36343 36372 36372 1 ELNSTYSEQDPLLK KVKPYLPMIIAPLFRELNSTYSEQDPLLKN RELNSTYSEQDPLLKNLSQEIIELLKKLVG R E L L K N 0 0 1 1 0 1 2 0 0 0 3 1 0 0 1 2 1 0 1 0 0 0 14 0 1635.7992 O75691 O75691 2677 2690 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00084901 58.223 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0783 1.1542 32.97 6 Median NaN NaN NaN 0 0 Median 1.3415 1.1802 NaN 1 0 Median 1.0783 1.1783 6.079 2 0 Median 1.2393 1.1397 29.888 2 0 Median NaN NaN NaN 0 0 Median 0.64448 0.55819 NaN 1 0 Median 15921000 6888500 9032500 0 0 0 1928200 682040 1246100 12593000 5538700 7054100 1173100 547190 625870 0 0 0 226920 120510 106410 7212 1691 7493 36344;36345;36346;36347;36348;36349 36373;36374;36375;36376 36375 4 ELNVMFIETSAK DKRQVSIEEGERKAKELNVMFIETSAKAGY KAKELNVMFIETSAKAGYNVKQLFRRVAAA K E L A K A 1 0 1 0 0 0 2 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 12 0 1380.6959 P20340 P20340 147 158 RAB6A Ras-related protein Rab-6A yes yes 2 0.0030408 72.006 By MS/MS 1 0.74226 0.68868 NaN 1 Median 0.74226 0.68868 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21154000 12327000 8826600 21154000 12327000 8826600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7213 2079 7494 36350 36377 36377 1 ELNVSFINEK DVYARRNLQRGYTAKELNVSFINEKKYHLQ GYTAKELNVSFINEKKYHLQERVDKVKKKV K E L E K K 0 0 2 0 0 0 2 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1191.6136 C9J050;C9JEJ2;P49585;Q9Y5K3 C9J050 229 238 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B yes no 2 0.014222 39.022 By matching By MS/MS 1 1 1.1133 1.0901 8.013 2 Median NaN NaN NaN 0 0 Median 1.3026 1.1536 NaN 1 0 Median 0.9515 1.03 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3443800 1829400 1614400 0 0 0 376490 152030 224460 3067300 1677400 1389900 0 0 0 0 0 0 0 0 0 7214 666 7495 36351;36352 36378 36378 1 ELNYFAK GVNLPQKAGGFLMKKELNYFAKALESPERP AGGFLMKKELNYFAKALESPERPFLAILGG K E L A K A 1 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 883.44397 P00558 P00558 193 199 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.016999 66.994 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.1892 1.0753 15.891 8 Median 1.1435 1.051 3.327 3 0 Plateau 1.3846 1.1795 24.451 3 0 Plateau 1.303 1.2767 NaN 1 0 Median 1.2368 1.1116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111380000 49807000 61569000 64959000 30149000 34809000 29980000 12525000 17455000 6330900 2548000 3782900 10106000 4584100 5522400 0 0 0 0 0 0 7215 1824 7496 36353;36354;36355;36356;36357;36358;36359;36360 36379;36380;36381;36382;36383;36384;36385;36386;36387;36388;36389;36390;36391 36391 13 ELPAAEPVLSPLEGTK TNMSRTLVNKEEPPKELPAAEPVLSPLEGT LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI K E L T K M 2 0 0 0 0 0 3 1 0 0 3 1 0 0 3 1 1 0 0 1 0 0 16 0 1649.8876 F6VRR5;Q9BY77 F6VRR5 283 298 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 4.2421E-05 80.69 By MS/MS 1 0.57144 0.55782 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57144 0.55782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7233900 4352300 2881600 0 0 0 0 0 0 7233900 4352300 2881600 0 0 0 0 0 0 0 0 0 7216 1051 7497 36361 36392;36393 36392 2 ELPAAVAPAGPASLAR ALGLSGGSLVSMLARELPAAVAPAGPASLA LPAAVAPAGPASLARWTLGFCDERLVPFDH R E L A R W 6 1 0 0 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 0 1489.8253 O95336;M0R261;M0R0U3 O95336 57 72 PGLS 6-phosphogluconolactonase yes no 2 1.8873E-10 153.95 By MS/MS By MS/MS By MS/MS 2 1 1 0.56859 0.54153 11.963 4 Median 0.56859 0.54153 7.9225 2 0 Median 0.76671 0.64845 NaN 1 0 Median 0.51957 0.49919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175110000 104200000 70906000 151770000 89888000 61882000 10806000 6196700 4609400 12532000 8117800 4414400 0 0 0 0 0 0 0 0 0 7217 1764 7498 36362;36363;36364;36365 36394;36395;36396;36397;36398;36399;36400;36401 36395 8 ELPAWVSFPDVEK DEEQLTAKTLYMSHRELPAWVSFPDVEKAE HRELPAWVSFPDVEKAEWLNKIVAQVWPFL R E L E K A 1 0 0 1 0 0 2 0 0 0 1 1 0 1 2 1 0 1 0 2 0 0 13 0 1515.7609 Q9BSJ8;F8VZB1 Q9BSJ8 126 138 ESYT1 Extended synaptotagmin-1 yes no 2 0.0044507 40.589 By MS/MS 1 0.92433 0.91641 NaN 1 Median 0.92433 0.91641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2622200 1272900 1349300 2622200 1272900 1349300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7218 3816 7499 36366 36402;36403 36403 2 ELPDLEDLMK HAAAFGRIAFSCPQKELPDLEDLMKRENQK SCPQKELPDLEDLMKRENQKILTPLVSLDT K E L M K R 0 0 0 2 0 0 2 0 0 0 3 1 1 0 1 0 0 0 0 0 0 0 10 0 1201.59 Q9HC38;F6TLX2 Q9HC38 225 234 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.046577 29.087 By matching By MS/MS 1 1 1.2013 1.0983 9.5403 2 Median 1.1786 1.175 NaN 1 0 Median 1.2244 1.0267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4953300 2106700 2846600 378670 170430 208240 4574600 1936300 2638300 0 0 0 0 0 0 0 0 0 0 0 0 7219 4025 7500 36367;36368 36404 36404 1 ELPDPQESIQR GRSAGWNIPMGKLYKELPDPQESIQRAAAN KLYKELPDPQESIQRAAANFFSASCVPCAD K E L Q R A 0 1 0 1 0 2 2 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 11 0 1310.6466 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 156 166 yes no 2 0.00018413 114.84 By MS/MS By MS/MS 1 2 0.063505 0.055038 110.22 3 Median 0.039 0.036886 NaN 1 1 Median 0.14707 0.12731 118.6 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43194000 34998000 8196200 20680000 19767000 913100 22514000 15231000 7283100 0 0 0 0 0 0 0 0 0 0 0 0 + 7220 769 7501 36369;36370;36371 36405;36406;36407;36408;36409;36410;36411 36406 7 ELPDVLER SDWVTIKFMKVDGAKELPDVLERVKFSCMA MKVDGAKELPDVLERVKFSCMAWTHDGKGM K E L E R V 0 1 0 1 0 0 2 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 969.51311 A0A499FJL1;P48147 A0A499FJL1 97 104 PREP Prolyl endopeptidase yes no 2 0.0088315 61.999 By MS/MS By matching 1 1 1.0457 0.95386 9.6835 2 Median 0.92787 0.89073 NaN 1 0 Median 1.1786 1.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8891900 4389400 4502400 4583000 2596200 1986800 4308900 1793200 2515700 0 0 0 0 0 0 0 0 0 0 0 0 7221 478 7502 36372;36373 36412 36412 1 ELPELLQR VIEQGGIQTVDQLIKELPELLQRNREILDE TVDQLIKELPELLQRNREILDESLRLLDEE K E L Q R N 0 1 0 0 0 1 2 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 996.5604 Q8WUM4 Q8WUM4 439 446 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0025421 107.43 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 0.82197 0.79144 78.609 6 Median 0.33715 0.33736 68.03 2 0 Median NaN NaN NaN 0 0 Median 0.78099 0.83477 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.251 2.3798 NaN 1 1 Median 0.94584 0.7951 8.1897 2 0 Median 23216000 14767000 8449100 13973000 10554000 3419000 0 0 0 4527200 2497900 2029300 0 0 0 3236000 917810 2318200 1480700 798180 682570 7222 3493 7503 36374;36375;36376;36377;36378;36379 36413;36414;36415 36413 3 ELPEQLQEHAIEDK ESLSDSRELVEGEMKELPEQLQEHAIEDKE KELPEQLQEHAIEDKETINNLDTSSSDFTI K E L D K E 1 0 0 1 0 2 4 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 14 0 1677.821 Q15424 Q15424 173 186 SAFB Scaffold attachment factor B1 yes yes 3 5.9203E-09 107.46 By MS/MS 1 1.165 1.0207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.165 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11124000 5425600 5698800 0 0 0 0 0 0 0 0 0 11124000 5425600 5698800 0 0 0 0 0 0 7223 2951 7504 36380 36416;36417 36417 2 ELPETDADLKR AGLVVPVDKNDVGYRELPETDADLKRICKT VGYRELPETDADLKRICKTIVEAASDEERL R E L K R I 1 1 0 2 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 11 1 1285.6514 Q9NWY4;A8MVJ9 Q9NWY4 240 250 C4orf27 UPF0609 protein C4orf27;Putative UPF0609 protein C4orf27-like yes no 2;3 4.0757E-05 89.247 By matching By MS/MS By MS/MS 1 1 2 0.86419 0.78097 10.265 4 Median NaN NaN NaN 0 0 Median 0.84494 0.789 NaN 1 0 Median 0.68102 0.77302 NaN 1 0 Median 0.98301 0.8587 14.965 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7283100 3431100 3852000 0 0 0 333620 176210 157410 1674300 955910 718430 5275100 2299000 2976100 0 0 0 0 0 0 7224 4153 7505 36381;36382;36383;36384 36418;36419;36420;36421 36420 4 ELPEYYELIR GRQLSEVFIQLPSRKELPEYYELIRKPVDF LPSRKELPEYYELIRKPVDFKKIKERIRNH K E L I R K 0 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1323.6711 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A0U1RRF5;P51531;F6VDE0;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;B1ALG2;F6T8Q0;B1ALG1;A0A0U1RR09;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51532 1493 1502 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00039662 78.192 By MS/MS By matching 1 2 1.1045 0.97092 14.467 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76898 0.83821 NaN 1 0 Median 1.2114 1.0425 10.067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31319000 17187000 14132000 0 0 0 0 0 0 29853000 16495000 13358000 1465900 692080 773800 0 0 0 0 0 0 7225 366;2433 7506 36385;36386;36387 36422;36423;36424 36423 3 ELPGHTGYLSCCR IYSLKTREGNVRVSRELPGHTGYLSCCRFL SRELPGHTGYLSCCRFLDDNQIITSSGDTT R E L C R F 0 1 0 0 2 0 1 2 1 0 2 0 0 0 1 1 1 0 1 0 0 0 13 0 1548.6813 E7EP32;P62879;C9JIS1;C9JXA5;C9JZN1 E7EP32 94 106 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 no no 3 0.00063628 62.258 By MS/MS 1 0.86901 0.72824 NaN 1 Median NaN NaN NaN 0 0 Median 0.86901 0.72824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2856700 1363200 1493500 0 0 0 2856700 1363200 1493500 0 0 0 0 0 0 0 0 0 0 0 0 7226 867 7507 36388 36425 36425 1 ELPNFWEQNRR EVTIELGCVKYPLEKELPNFWEQNRRSLIQ PLEKELPNFWEQNRRSLIQFMKQVHQGVRG K E L R R S 0 2 2 0 0 1 2 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 11 1 1487.727 O75976 O75976 773 783 CPD Carboxypeptidase D yes yes 3 0.0069339 31.843 By MS/MS 1 0.64343 0.68809 NaN 1 Median 0.64343 0.68809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5961000 3258100 2702900 5961000 3258100 2702900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7227 1714 7508 36389 36426 36426 1 ELPPAAAIGATSLVAAPHSSSSSPSK MSDPSWNRRPGNEERELPPAAAIGATSLVA SLVAAPHSSSSSPSKDSSRGETEERKDSDD R E L S K D 6 0 0 0 0 0 1 1 1 1 2 1 0 0 4 7 1 0 0 1 0 0 26 0 2432.2547 Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86 928 953 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 3.0689E-05 37.673 By MS/MS 1 0.68964 0.66736 NaN 1 Median 0.68964 0.66736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10541000 6795400 3745700 10541000 6795400 3745700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7228 2907 7509 36390 36427 36427 1 ELPQFATGENLPR LCEDEDVSIRRQAIKELPQFATGENLPRVA IKELPQFATGENLPRVADILTQLLQTDDSA K E L P R V 1 1 1 0 0 1 2 1 0 0 2 0 0 1 2 0 1 0 0 0 0 0 13 0 1470.7467 G3V1C3;Q9BZZ5 G3V1C3 85 97 API5 Apoptosis inhibitor 5 yes no 2;3 4.8234E-07 125.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 4 3 4 1 0.76704 0.70586 21.923 17 Median 0.75282 0.73682 7.8013 2 0 Median 0.85799 0.7339 3.3483 3 0 Median 0.72796 0.71307 6.0448 4 0 Median 0.86086 0.72509 28.458 3 0 Median 0.56825 0.57229 43.559 4 0 Median 0.7695 0.66164 NaN 1 0 Median 458950000 255420000 203520000 26634000 14551000 12083000 6637600 3422200 3215500 384130000 214840000 169290000 21718000 11037000 10681000 18099000 10621000 7478000 1732900 950970 781930 7229 1103 7510 36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407 36428;36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441;36442;36443;36444 36429 17 ELPQLVASVIESESEILHHEK VRPLLSASYSAFEMKELPQLVASVIESESE ASVIESESEILHHEKQYEPFYSSFVALSTH K E L E K Q 1 0 0 0 0 1 5 0 2 2 3 1 0 0 1 3 0 0 0 2 0 0 21 0 2386.238 Q5T4S7 Q5T4S7 48 68 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 0.05944 7.5332 By MS/MS 1 0.91584 0.80088 NaN 1 Median NaN NaN NaN 0 0 Median 0.91584 0.80088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2255600 1499500 756060 0 0 0 2255600 1499500 756060 0 0 0 0 0 0 0 0 0 0 0 0 7230 3089 7511 36408 36445 36445 1 ELPQVSFVK PQCAQMNEVMAELAKELPQVSFVKLEAEGV MAELAKELPQVSFVKLEAEGVPEVSEKYEI K E L V K L 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 9 0 1045.5808 O76003 O76003 59 67 GLRX3 Glutaredoxin-3 yes yes 2 0.010372 48.283 By MS/MS By MS/MS 2 2 0.94954 0.93166 12.993 4 Median 0.90932 0.82894 1.2975 2 0 Median NaN NaN NaN 0 0 Median 1.0357 1.0378 0.028006 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129460000 73009000 56446000 119410000 68098000 51313000 0 0 0 10044000 4911100 5132600 0 0 0 0 0 0 0 0 0 7231 1715 7512 36409;36410;36411;36412 36446;36447;36448;36449;36450 36446 5 ELPRPVLEGQQSER EELEELGKEECFQNKELPRPVLEGQQSERT KELPRPVLEGQQSERTPNNRPDAPKEKKKK K E L E R T 0 2 0 0 0 2 3 1 0 0 2 0 0 0 2 1 0 0 0 1 0 0 14 1 1636.8533 Q9BVJ6;Q5TAP6 Q9BVJ6 527 540 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 7.8553E-05 76.01 By MS/MS By MS/MS 1 1 0.84038 0.83287 14.264 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8479 0.92126 NaN 1 0 Median 0.83293 0.75297 NaN 1 0 Median 11419000 6379700 5039400 0 0 0 0 0 0 0 0 0 0 0 0 9421700 5298300 4123500 1997400 1081400 915970 7232 3855 7513 36413;36414 36451;36452 36451 2 ELPSAVSR MNNNIEEQRRNRLARELPSAVSRDKSSKVP RRNRLARELPSAVSRDKSSKVPSALAPASQ R E L S R D 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 0 1 0 0 8 0 857.46068 O00429 O00429 523 530 DNM1L Dynamin-1-like protein yes yes 2 0.013601 52.716 By MS/MS 1 0.93707 0.81196 NaN 1 Median NaN NaN NaN 0 0 Median 0.93707 0.81196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4072500 1964700 2107900 0 0 0 4072500 1964700 2107900 0 0 0 0 0 0 0 0 0 0 0 0 7233 1463 7514 36415 36453 36453 1 ELPSFLGK KFKLNKSELKELLTRELPSFLGKRTDEAAF LKELLTRELPSFLGKRTDEAAFQKLMSNLD R E L G K R 0 0 0 0 0 0 1 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 8 0 889.49092 P26447 P26447 41 48 S100A4 Protein S100-A4 yes yes 2 0.026777 41.652 By MS/MS By matching By matching 1 2 1 1.3332 1.2257 34.135 4 Median 0.99288 0.90651 NaN 1 0 Median 1.986 1.6767 18.01 2 0 Median 1.0013 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8890400 4183100 4707400 6651400 3293400 3358000 1144300 379750 764540 1094800 509900 584860 0 0 0 0 0 0 0 0 0 7234 2145 7515 36416;36417;36418;36419 36454;36455 36454 2 ELPSTFGQLSALK LKKLETLSLNNNHLRELPSTFGQLSALKTL LRELPSTFGQLSALKTLSLSGNQLGALPPQ R E L L K T 1 0 0 0 0 1 1 1 0 0 3 1 0 1 1 2 1 0 0 0 0 0 13 0 1389.7504 H3BSW0;A0A3B3ISV5;Q8N9N7 H3BSW0 99 111 LRRC57 Leucine-rich repeat-containing protein 57 yes no 2 0.00077673 65.5 By MS/MS By MS/MS 1 1 1.1889 1.1654 52.257 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85555 0.80538 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.652 1.6864 NaN 1 0 Median NaN NaN NaN 0 0 Median 12107000 5548000 6559300 0 0 0 0 0 0 6372600 3494000 2878600 0 0 0 5734600 2054000 3680700 0 0 0 7235 429 7516 36420;36421 36456;36457;36458;36459 36457 4 ELPTAFDYVEFTR YCVSHMKPYVDGKGRELPTAFDYVEFTRSL GRELPTAFDYVEFTRSLFVN__________ R E L T R S 1 1 0 1 0 0 2 0 0 0 1 0 0 2 1 0 2 0 1 1 0 0 13 0 1586.7617 A0A0D9SF54;Q13813 Q13813 2455 2467 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00010955 84.658 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 2 3 0.95404 0.92041 20.36 15 Median 1.1492 1.112 6.8089 2 0 Median 1.2466 1.1443 10.556 3 0 Median 0.75934 0.80875 21.945 5 0 Median 0.95838 0.83917 0.98095 2 0 Median 0.9207 0.98271 6.1728 3 0 Median NaN NaN NaN 0 0 Median 73665000 37565000 36100000 15369000 7050000 8319400 8595800 3713800 4882000 41163000 22405000 18758000 2014700 996740 1018000 6522000 3398800 3123200 0 0 0 7236 264;2838 7517 36422;36423;36424;36425;36426;36427;36428;36429;36430;36431;36432;36433;36434;36435;36436 36460;36461;36462;36463;36464;36465;36466;36467;36468;36469;36470;36471;36472;36473;36474;36475;36476;36477;36478 36462 19 ELPTVTTNVQNSQDK LYQRDLEVALALSVKELPTVTTNVQNSQDK ELPTVTTNVQNSQDKSIEKHGSSKIETMNK K E L D K S 0 0 2 1 0 2 1 0 0 0 1 1 0 0 1 1 3 0 0 2 0 0 15 0 1672.8268 F5H1Y0;H0YGT5;Q96B01 F5H1Y0 92 106 RAD51AP1 RAD51-associated protein 1 yes no 2 6.7656E-06 86.313 By MS/MS By MS/MS 2 2 0.62593 0.59688 18.491 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67153 0.69611 11.159 2 0 Median 0.61549 0.52183 8.4133 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7708900 4414700 3294200 0 0 0 0 0 0 5770800 3264100 2506700 1938100 1150600 787480 0 0 0 0 0 0 7237 1022 7518 36437;36438;36439;36440 36479;36480;36481;36482;36483 36481 5 ELPTVVFR VPKENLESWLNYLKKELPTVVFRASTKPKD WLNYLKKELPTVVFRASTKPKDKGKITKRV K E L F R A 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 8 0 959.54402 Q9BVP2 Q9BVP2 198 205 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.0069954 68.915 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 3 3 0.97441 0.91677 34.661 9 Median 0.3764 0.368 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87118 0.91244 NaN 1 0 Median 0.97941 0.84774 NaN 1 0 Median 0.88185 0.93046 8.8063 3 0 Median 1.1393 0.97974 19.034 3 0 Median 35124000 18936000 16188000 4355700 3304700 1050900 0 0 0 5190400 2843300 2347100 176540 86167 90370 19627000 10148000 9479200 5775100 2554600 3220500 7238 3858 7519 36441;36442;36443;36444;36445;36446;36447;36448;36449 36484;36485;36486;36487;36488 36486 5 ELPVNAQNYVR LPGWNTDISNARAFKELPVNAQNYVRFIED RAFKELPVNAQNYVRFIEDELQIPVKWIGV K E L V R F 1 1 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 11 0 1301.6728 P30520 P30520 420 430 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.00013542 144.38 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.79464 0.77096 7.8323 4 Linear 0.83743 0.78721 NaN 1 0 Median 0.85551 0.71912 NaN 1 0 Median 0.69213 0.68786 NaN 1 0 Median 0.75403 0.65467 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57602000 30451000 27152000 30774000 15502000 15272000 15223000 8012600 7210700 7372200 4683400 2688800 4232600 2252300 1980300 0 0 0 0 0 0 7239 2195 7520 36450;36451;36452;36453 36489;36490;36491;36492;36493;36494;36495 36490 7 ELQAEQEDR ANLDRAKAGLLERVKELQAEQEDRALRSFK LLERVKELQAEQEDRALRSFKLSVTVDPKY K E L D R A 1 1 0 1 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1116.5047 Q00341;A0A024R4E5;H0Y394 Q00341 1040 1048 HDLBP Vigilin yes no 2 0.0054075 71.692 By MS/MS 2 1.2182 1.0423 3.0617 2 Median NaN NaN NaN 0 0 Median 1.2182 1.0423 3.0617 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485800 2070400 2415400 0 0 0 4485800 2070400 2415400 0 0 0 0 0 0 0 0 0 0 0 0 7240 4 7521 36454;36455 36496;36497 36497 2 ELQAHGADELLK DKTKVMVSISLKFYKELQAHGADELLKRVY FYKELQAHGADELLKRVYGSFLVNPESGYN K E L L K R 2 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1322.683 O15144;C9JTV5;G5E9J0 O15144 66 77 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 3.5206E-15 147.62 By MS/MS By MS/MS 1 1 1.0769 0.96741 4.3025 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97535 0.93842 NaN 1 1 Median 1.189 0.99729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18792000 8387000 10404000 0 0 0 0 0 0 10112000 4808000 5304000 8679500 3579000 5100500 0 0 0 0 0 0 7241 1526 7522 36456;36457 36498;36499 36498 2 ELQAHGADELLKR DKTKVMVSISLKFYKELQAHGADELLKRVY YKELQAHGADELLKRVYGSFLVNPESGYNV K E L K R V 2 1 0 1 0 1 2 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1478.7841 O15144;C9JTV5;G5E9J0 O15144 66 78 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 3 0.00052558 64.65 By MS/MS By matching By MS/MS 1 1 1 1.1384 1.1328 24.043 3 Median 1.1384 1.1328 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.96859 1.0542 NaN 1 0 Median 1.7479 1.6495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11446000 5182600 6263100 3661000 1581200 2079800 0 0 0 4699200 2416900 2282300 3085500 1184500 1901000 0 0 0 0 0 0 7242 1526 7523 36458;36459;36460 36500;36501 36500 1 ELQALGFQPGPITDTTR ______________________________ QALGFQPGPITDTTRDVYRNKLRRLRGEAR R E L T R D 1 1 0 1 0 2 1 2 0 1 2 0 0 1 2 0 3 0 0 0 0 0 17 0 1842.9476 Q8NC56;D6RBV0 Q8NC56 12 28 LEMD2 LEM domain-containing protein 2 yes no 2 1.2319E-10 105.65 By MS/MS By MS/MS 2 2 0.82341 0.82451 9.9157 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7382 0.76132 6.2511 2 0 Median NaN NaN NaN 0 0 Median 0.89112 0.88587 5.1278 2 0 Median NaN NaN NaN 0 0 Median 16694000 8730000 7964500 0 0 0 0 0 0 3783800 2390500 1393300 0 0 0 12911000 6339400 6571300 0 0 0 7243 3415 7524 36461;36462;36463;36464 36502;36503;36504;36505;36506 36504 5 ELQAQIAELQEDFESEK DDETLHKNNALKVVRELQAQIAELQEDFES QAQIAELQEDFESEKASRNKAEKQKRDLSE R E L E K A 2 0 0 1 0 3 5 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 17 0 2005.948 P35580 P35580 1115 1131 MYH10 Myosin-10 yes yes 2;3 1.4168E-13 113.77 By MS/MS By matching By matching 2 2 3 1.0074 0.96812 27.726 7 Median 0.9289 0.88738 12.315 2 0 Median 1.1837 1.0492 2.3974 2 0 Median 0.69546 0.77129 45.677 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23451000 10596000 12855000 7236900 3646700 3590200 14519000 5976500 8542100 1695200 972320 722870 0 0 0 0 0 0 0 0 0 7244 2245 7525 36465;36466;36467;36468;36469;36470;36471 36507;36508 36507 2 ELQCLTPR ADVIQATGDAICIFRELQCLTPRGRYDIRI DAICIFRELQCLTPRGRYDIRIYPTFLHLH R E L P R G 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 0 1015.5121 Q08945;E9PMD4 Q08945 204 211 SSRP1 FACT complex subunit SSRP1 yes no 2 0.044461 54.157 By MS/MS 1 1.2198 1.29 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2198 1.29 NaN 1 1 Median NaN NaN NaN 0 0 Median 3134900 1447600 1687300 0 0 0 0 0 0 0 0 0 0 0 0 3134900 1447600 1687300 0 0 0 7245 2743 7526 36472 36509 36509 1 ELQDAFSR SDSESESDESLVTDRELQDAFSRGLLKPGL ESLVTDRELQDAFSRGLLKPGLNVVLEGPK R E L S R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 964.46141 H7C2Q8;Q99848 H7C2Q8 77 84 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0035542 89.142 By MS/MS By MS/MS 1 1 1.228 1.1277 1.2964 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1056 1.1174 NaN 1 0 Median 1.3639 1.138 NaN 1 0 Median 16012000 6602900 9409400 0 0 0 0 0 0 0 0 0 0 0 0 14040000 5620200 8419300 1972700 982710 990030 7246 1262 7527 36473;36474 36510;36511;36512 36511 3 ELQDSTQMNEK AVLLAFNNSETVSYKELQDSTQMNEKELTK VSYKELQDSTQMNEKELTKTIKSLLDVKMI K E L E K E 0 0 1 1 0 2 2 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 11 0 1321.582 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 611 621 CUL2 Cullin-2 yes no 2 0.0074535 42.336 By matching By MS/MS By matching 1 1 1 1.0367 1.0213 17.601 3 Plateau 1.0367 1.0471 NaN 1 0 Median 1.0766 0.96543 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81446 0.74734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2463300 1113300 1350000 1146900 484470 662390 1015400 481110 534280 0 0 0 301070 147730 153340 0 0 0 0 0 0 7247 196 7528 36475;36476;36477 36513;36514 36513 2 ELQEAAAVPTTPR EPVEQPRVTRKRLERELQEAAAVPTTPRRG ERELQEAAAVPTTPRRGRPPKTRRRADEEE R E L P R R 3 1 0 0 0 1 2 0 0 0 1 0 0 0 2 0 2 0 0 1 0 0 13 0 1381.7201 Q96T58 Q96T58 1937 1949 SPEN Msx2-interacting protein yes yes 2 0.00059718 77.64 By MS/MS By MS/MS 2 1 0.67071 0.64591 3.3162 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59733 0.63094 NaN 1 1 Median 0.75311 0.66124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11749000 6723800 5024800 0 0 0 0 0 0 9583600 5686300 3897300 2165000 1037500 1127500 0 0 0 0 0 0 7248 3741 7529 36478;36479;36480 36515;36516;36517 36517 3 ELQEAQNER EIFQKKLDETTRLLRELQEAQNERLSTRPP TTRLLRELQEAQNERLSTRPPPNMICLLGP R E L E R L 1 1 1 0 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1115.5207 Q9NPI1;I3L4V5 Q9NPI1 555 563 BRD7 Bromodomain-containing protein 7 yes no 2 0.0091518 49.418 By MS/MS By matching 2 2 0.92409 0.88623 14.67 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76982 0.81162 9.5526 2 0 Median 1.1616 0.98953 12.709 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5798000 3073400 2724600 0 0 0 0 0 0 5427300 2886200 2541100 370720 187220 183500 0 0 0 0 0 0 7249 4053 7530 36481;36482;36483;36484 36518 36518 1 ELQEESGLTVDALHK GKVQEGETIEDGARRELQEESGLTVDALHK ELQEESGLTVDALHKVGQIVFEFVGEPELM R E L H K V 1 0 0 1 0 1 3 1 1 0 3 1 0 0 0 1 1 0 0 1 0 0 15 0 1667.8366 P36639 P36639 93 107 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes yes 2;3 3.7253E-19 132.76 By MS/MS By MS/MS By matching 2 1 1 1.2153 1.1096 6.524 4 Median 1.1754 1.1096 5.807 2 1 Median 1.2169 1.0432 NaN 1 0 Median 1.2137 1.1961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33559000 15148000 18411000 24040000 10971000 13068000 6857700 2895700 3962000 2662000 1281400 1380600 0 0 0 0 0 0 0 0 0 7250 2261 7531 36485;36486;36487;36488 36519;36520;36521;36522 36521 4 ELQELLK IQGAQKEPGNKSHAKELQELLKEKQQEVKQ PGNKSHAKELQELLKEKQQEVKQLQKDCIR K E L L K E 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 871.50148 Q14789;C9JGI8;Q9NZW5;B8ZZG1;C9J4Q3 Q14789 2009 2015 GOLGB1;MPP6 Golgin subfamily B member 1;MAGUK p55 subfamily member 6 no no 2 0.0034092 104.11 By MS/MS By MS/MS By matching 1 1 1 0.85377 0.8148 24.729 3 Median 0.75838 0.7328 NaN 1 0 Median 1.3337 1.1741 NaN 1 0 Median 0.85377 0.8148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12127000 5003500 7123900 2013600 1044500 969110 8810200 3361300 5448900 1303600 597690 705870 0 0 0 0 0 0 0 0 0 7251 2900;647 7532 36489;36490;36491 36523;36524 36524 2 ELQELNELFKPVVAAQK QSEAEKKLKKDDKKKELQELNELFKPVVAA QELNELFKPVVAAQKISKGADPKSVVCAFF K E L Q K I 2 0 1 0 0 2 3 0 0 0 3 2 0 1 1 0 0 0 0 2 0 0 17 1 1955.0728 Q8WU90;F8WB26 Q8WU90 77 93 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes no 3 0.025215 17.281 By matching By MS/MS 1 2 0.88269 0.8384 46.556 3 Median NaN NaN NaN 0 0 Median 0.41578 0.39067 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89537 0.87243 5.6272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12078000 6795100 5283200 0 0 0 3454300 2286600 1167700 0 0 0 8624000 4508500 4115600 0 0 0 0 0 0 7252 3485 7533 36492;36493;36494 36525 36525 1 ELQELQDSLNAER VESLRYRQRVELLERELQELQDSLNAEREK ERELQELQDSLNAEREKVQVTAKTMAQHEE R E L E R E 1 1 1 1 0 2 3 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1543.7478 P12270 P12270 1234 1246 TPR Nucleoprotein TPR yes yes 2 1.9445E-80 257.88 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1317 1.0177 8.1073 8 Median 1.0757 1.0312 9.5097 2 1 Median 1.2199 1.0108 6.627 2 0 Median 0.91655 0.98131 9.0854 2 0 Median 1.2327 1.0788 12.18 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109180000 53342000 55837000 22508000 11721000 10786000 25474000 11666000 13808000 55407000 27472000 27935000 5790600 2482300 3308300 0 0 0 0 0 0 7253 1978 7534 36495;36496;36497;36498;36499;36500;36501;36502 36526;36527;36528;36529;36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540 36532 15 ELQELQDSLNAEREK VESLRYRQRVELLERELQELQDSLNAEREK ELQELQDSLNAEREKVQVTAKTMAQHEELM R E L E K V 1 1 1 1 0 2 4 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 15 1 1800.8854 P12270 P12270 1234 1248 TPR Nucleoprotein TPR yes yes 3 3.3502E-10 106.52 By MS/MS 1 1.5913 1.6426 NaN 1 Median 1.5913 1.6426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6486700 2366600 4120100 6486700 2366600 4120100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7254 1978 7535 36503 36541 36541 1 ELQELSSSIK ELDKEQEDVASTTRKELQELSSSIKDLVLK STTRKELQELSSSIKDLVLKSRKSSVTEE_ K E L I K D 0 0 0 0 0 1 2 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 10 0 1132.5976 O94874 O94874 771 780 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.04531 29.473 By matching By MS/MS 1 1 1.1249 1.0442 19.916 2 Median 0.92301 0.90707 NaN 1 0 Median 1.3709 1.2022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5877600 2872400 3005200 2195800 1133600 1062200 3681800 1738800 1943000 0 0 0 0 0 0 0 0 0 0 0 0 7255 1732 7536 36504;36505 36542 36542 1 ELQELVQYPVEHPDK QVTWEDIGGLEDVKRELQELVQYPVEHPDK ELQELVQYPVEHPDKFLKFGMTPSKGVLFY R E L D K F 0 0 0 1 0 2 3 0 1 0 2 1 0 0 2 0 0 0 1 2 0 0 15 0 1822.9101 P55072 P55072 488 502 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 1.4604E-13 169.89 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 0.80216 0.75774 10.497 9 Median 0.7903 0.73927 6.5569 4 0 Median 0.86031 0.75246 2.8639 2 0 Median 0.75547 0.82783 16.991 2 0 Median 1.0239 0.88827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117330000 61213000 56120000 59501000 30462000 29039000 41300000 22278000 19022000 14480000 7804200 6675600 2052400 669210 1383200 0 0 0 0 0 0 7256 2494 7537 36506;36507;36508;36509;36510;36511;36512;36513;36514 36543;36544;36545;36546;36547;36548;36549;36550;36551;36552;36553;36554;36555;36556;36557 36545 15 ELQELVQYPVEHPDKFLK QVTWEDIGGLEDVKRELQELVQYPVEHPDK ELVQYPVEHPDKFLKFGMTPSKGVLFYGPP R E L L K F 0 0 0 1 0 2 3 0 1 0 3 2 0 1 2 0 0 0 1 2 0 0 18 1 2211.1576 P55072 P55072 488 505 VCP Transitional endoplasmic reticulum ATPase yes yes 3;4 1.611E-06 63.918 By MS/MS 4 0.77475 0.79647 13.299 4 Median 0.77475 0.79647 13.299 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62834000 37578000 25256000 62834000 37578000 25256000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7257 2494 7538 36515;36516;36517;36518 36558;36559;36560;36561;36562;36563;36564;36565 36562 8 ELQEQLK LCEHQFTIIVAELQKELQEQLKITTFKDLV IIVAELQKELQEQLKITTFKDLVIRDKELT K E L L K I 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 886.476 O75694 O75694 813 819 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.016173 84.359 By MS/MS 1 1.651 1.4317 NaN 1 Median NaN NaN NaN 0 0 Median 1.651 1.4317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3243000 1331800 1911200 0 0 0 3243000 1331800 1911200 0 0 0 0 0 0 0 0 0 0 0 0 7258 1692 7539 36519 36566 36566 1 ELQEQMSR VRNQQTIGARKELQKELQEQMSRGDPFKDI ARKELQKELQEQMSRGDPFKDIILYVKEEM K E L S R G 0 1 0 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 8 0 1019.4706 Q7L1Q6;C9IZ80;H0Y503 Q7L1Q6 260 267 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.0072183 67.981 By matching By MS/MS By matching By matching 2 1 1 1 1.2537 1.103 13.788 5 Median 1.2554 1.2281 6.1176 2 0 Median 1.2771 1.103 NaN 1 0 Median 1.0131 0.9576 NaN 1 0 Median 1.1303 0.92393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6883600 3148300 3735300 1142300 492390 649920 3101200 1334100 1767100 2343800 1210200 1133600 296260 111620 184630 0 0 0 0 0 0 7259 3219 7540 36520;36521;36522;36523;36524 36567 36567 1 ELQGDGPPSSPTNDPTVK GEDPAQPRKYKKKKKELQGDGPPSSPTNDP GDGPPSSPTNDPTVKYETQPRFITATGGTL K E L V K Y 0 0 1 2 0 1 1 2 0 0 1 1 0 0 4 2 2 0 0 1 0 0 18 0 1837.8694 Q12873 Q12873 704 721 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.0075375 43.382 By MS/MS 1 0.41833 0.46415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41833 0.46415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1468200 1074900 393320 0 0 0 0 0 0 1468200 1074900 393320 0 0 0 0 0 0 0 0 0 7260 2766 7541 36525 36568 36568 1 ELQGFIAR SSSGKPDVPCSLYMKELQGFIARVMSDYFK PCSLYMKELQGFIARVMSDYFKHFECLDFV K E L A R V 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 932.50797 Q9UP83 Q9UP83 646 653 COG5 Conserved oligomeric Golgi complex subunit 5 yes yes 2 0.039331 37.021 By MS/MS 1 2.6712 2.6464 NaN 1 Median 2.6712 2.6464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1675400 522550 1152900 1675400 522550 1152900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7261 4354 7542 36526 36569 36569 1 ELQGFLDGVK DACIRERFVDSKRARELQGFLDGVKKGQEQ SKRARELQGFLDGVKKGQEQVLGDLSMILC R E L V K K 0 0 0 1 0 1 1 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1104.5815 Q8WX92 Q8WX92 282 291 NELFB Negative elongation factor B yes yes 2 0.042746 30.254 By MS/MS 1 0.95603 0.9182 NaN 1 Median 0.95603 0.9182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3933100 1929500 2003600 3933100 1929500 2003600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7262 3514 7543 36527 36570;36571 36570 2 ELQGLATNQPFFWEAQAPVSTVEQLDQR RQTLLFSATLTDTLRELQGLATNQPFFWEA EAQAPVSTVEQLDQRYLLVPEKVKDAYLVH R E L Q R Y 3 1 1 1 0 5 3 1 0 0 3 0 0 2 2 1 2 1 0 2 0 0 28 0 3201.5731 Q9Y6V7 Q9Y6V7 195 222 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 3 0.012819 16.447 By MS/MS 2 0.67891 0.69763 0.86321 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67891 0.69763 0.86321 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7333200 3918900 3414300 0 0 0 0 0 0 7333200 3918900 3414300 0 0 0 0 0 0 0 0 0 7263 4497 7544 36528;36529 36572;36573;36574;36575 36574 4 ELQHAALGGTATR EELNRKAEELDRRERELQHAALGGTATRQN ERELQHAALGGTATRQNNWPPLPSFCPVQP R E L T R Q 3 1 0 0 0 1 1 2 1 0 2 0 0 0 0 0 2 0 0 0 0 0 13 0 1323.6895 O14828 O14828 119 131 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 2;3 8.3164E-07 101.93 By MS/MS By MS/MS By matching 5 6 1 1.2535 1.1655 12.318 11 Median 1.1586 1.1637 18.326 4 1 Median 1.3888 1.1509 9.8305 6 0 Median 1.2196 1.2003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20240000 8148100 12092000 3875900 1948800 1927100 16148000 6085700 10062000 216600 113560 103040 0 0 0 0 0 0 0 0 0 7264 1498 7545 36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540;36541 36576;36577;36578;36579;36580;36581 36580 6 ELQHYVTMELR GLKSRNEETRAKAAKELQHYVTMELREMSQ KAAKELQHYVTMELREMSQEESTRFYDQLN K E L L R E 0 1 0 0 0 1 2 0 1 0 2 0 1 0 0 0 1 0 1 1 0 0 11 0 1417.7024 P42345 P42345 43 53 MTOR Serine/threonine-protein kinase mTOR yes yes 3 0.0036507 37.426 By MS/MS By matching 1 1 1.1433 1.0303 25.728 2 Median 0.89573 0.85889 NaN 1 0 Median 1.4592 1.2358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5593800 2743800 2850000 4658400 2373600 2284700 935470 370190 565270 0 0 0 0 0 0 0 0 0 0 0 0 7265 2310 7546 36542;36543 36582 36582 1 ELQISLK CTERHPAEWRLALEKELQISLKQVLTALLN EWRLALEKELQISLKQVLTALLNSRTTSHL K E L L K Q 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 Q03164 Q03164 1639 1645 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0026817 118.01 By MS/MS By MS/MS 2 2 1.1854 1.1722 4.6308 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2151 1.1834 2.6752 2 0 Median NaN NaN NaN 0 0 Median 1.1568 1.1328 6.1734 2 0 Median NaN NaN NaN 0 0 Median 201300000 93516000 107780000 0 0 0 0 0 0 90472000 41640000 48832000 0 0 0 110830000 51876000 58951000 0 0 0 7266 2708 7547 36544;36545;36546;36547 36583;36584;36585;36586;36587;36588 36586 6 ELQLIPDQLR SELPVLSDSERDMKKELQLIPDQLRHLGNA RDMKKELQLIPDQLRHLGNAIKQVTMKKDY K E L L R H 0 1 0 1 0 2 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1223.6874 Q99567;J3KMX1 Q99567 664 673 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.002391 60.436 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 0.86723 0.85838 12.946 6 Median 0.71711 0.70686 NaN 1 0 Median 0.89847 0.77979 NaN 1 0 Median 0.82261 0.85838 0.36175 2 0 Median 1.1334 0.97644 NaN 1 0 Median 0.9294 0.98983 NaN 1 0 Median NaN NaN NaN 0 0 Median 22414000 12199000 10215000 2232500 1341800 890670 2405500 1608800 796700 14563000 7755800 6806800 1474500 673190 801340 1739000 819640 919320 0 0 0 7267 3753 7548 36548;36549;36550;36551;36552;36553 36589;36590;36591;36592 36590 4 ELQLPSMSMLTSK NVVIVASQKRPLGGRELQLPSMSMLTSKTS GRELQLPSMSMLTSKTSTQKFFLRVLQVII R E L S K T 0 0 0 0 0 1 1 0 0 0 3 1 2 0 1 3 1 0 0 0 0 0 13 0 1463.7364 Q7Z6Z7;H0Y659 Q7Z6Z7 3704 3716 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 5.2809E-06 97.452 By MS/MS By matching 2 3 0.98251 0.89439 10.191 5 Median 0.85166 0.83701 9.5288 2 1 Median 1.0322 0.89439 9.9264 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29275000 14302000 14973000 21301000 10982000 10319000 7973900 3319400 4654500 0 0 0 0 0 0 0 0 0 0 0 0 7268 3253 7549 36554;36555;36556;36557;36558 36593;36594;36595;36596 36594 4 ELQNTVANLHVR EELDRKAAELERKERELQNTVANLHVRQNN KERELQNTVANLHVRQNNWPPLPSWCPVKP R E L V R Q 1 1 2 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 0 2 0 0 12 0 1392.7474 O15127;H3BV04;H3BN93;H3BUB6;H3BPL9 O15127 105 116 SCAMP2 Secretory carrier-associated membrane protein 2 yes no 2;3 2.0571E-15 191.85 By MS/MS By MS/MS 6 6 1.2324 1.0962 13.517 12 Median 1.1418 1.0715 14.972 6 2 Median 1.3499 1.1413 12.869 6 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196390000 75879000 120510000 102450000 42565000 59883000 93945000 33314000 60631000 0 0 0 0 0 0 0 0 0 0 0 0 7269 1523 7550 36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569;36570 36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607 36600 11 ELQNTVSQLLESEGWNR PLVFDMAYENYMKRKELQNTVSQLLESEGW QNTVSQLLESEGWNRRNVDPFHIYFCNLKI K E L N R R 0 1 2 0 0 2 3 1 0 0 3 0 0 0 0 2 1 1 0 1 0 0 17 0 2001.9756 Q7L0Y3;C9JVB6 Q7L0Y3 219 235 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.049551 21.251 By MS/MS By matching 1 1 1.2027 1.1228 1.9476 2 Median NaN NaN NaN 0 0 Median 1.2942 1.1074 NaN 1 0 Median 1.1176 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2245500 943440 1302100 0 0 0 1914900 794380 1120500 330650 149070 181580 0 0 0 0 0 0 0 0 0 7270 3218 7551 36571;36572 36608 36608 1 ELQNTVSQLLESEGWNRR PLVFDMAYENYMKRKELQNTVSQLLESEGW NTVSQLLESEGWNRRNVDPFHIYFCNLKID K E L R R N 0 2 2 0 0 2 3 1 0 0 3 0 0 0 0 2 1 1 0 1 0 0 18 1 2158.0767 Q7L0Y3;C9JVB6 Q7L0Y3 219 236 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 3 0.00060876 32.815 By matching By MS/MS By matching 1 1 1 1.5057 1.4061 10.195 3 Median 1.2336 1.298 NaN 1 0 Median 1.5057 1.4061 NaN 1 0 Median 1.5506 1.5892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3792200 1592300 2199900 650500 306510 343990 2231600 871070 1360600 910040 414680 495360 0 0 0 0 0 0 0 0 0 7271 3218 7552 36573;36574;36575 36609;36610 36609 2 ELQNVVGR SQEEELRQANRELEKELQNVVGRNQLLEGK ANRELEKELQNVVGRNQLLEGKLQALQADY K E L G R N 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 913.49813 Q9BQS8 Q9BQS8 624 631 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 2 0.0555 50.025 By MS/MS 1 1.327 1.1693 NaN 1 Median NaN NaN NaN 0 0 Median 1.327 1.1693 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 496210 199610 296600 0 0 0 496210 199610 296600 0 0 0 0 0 0 0 0 0 0 0 0 7272 3791 7553 36576 36611 36611 1 ELQPSEEVTWK ERLTAFRNKSMLFKRELQPSEEVTWK____ LFKRELQPSEEVTWK_______________ R E L W K - 0 0 0 0 0 1 3 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 11 0 1344.6561 O75438 O75438 48 58 NDUFB1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 yes yes 2 0.00071474 64.04 By MS/MS By MS/MS By matching 2 1 1 0.83399 0.75386 28.419 4 Median 0.83399 0.75386 3.1987 2 0 Median 1.5307 1.2555 NaN 1 0 Median 0.65087 0.66154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10651000 4897700 5753500 3768400 2071200 1697200 5931600 2266000 3665600 951110 560400 390720 0 0 0 0 0 0 0 0 0 7273 1672 7554 36577;36578;36579;36580 36612;36613;36614;36615 36615 4 ELQQGKPYHWR ESKPEKEDEPQEDAKELQQGKPYHWRDWSI EDAKELQQGKPYHWRDWSIIRGRDCLYIWS K E L W R D 0 1 0 0 0 2 1 1 1 0 1 1 0 0 1 0 0 1 1 0 0 0 11 1 1440.7262 A0A087X2H1;Q9ULT8;G3V4V5;H0YJP0 A0A087X2H1 654 664 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 0.058412 26.118 By MS/MS 1 1.5665 1.6044 NaN 1 Median 1.5665 1.6044 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 655950 223430 432520 655950 223430 432520 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7274 137 7555 36581 36616 36616 1 ELQSAVPR LRLQPHPQLSPEIRRELQSAVPRDVEDVPI LSPEIRRELQSAVPRDVEDVPITVE_____ R E L P R D 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 8 0 898.48723 Q13895 Q13895 420 427 BYSL Bystin yes yes 2 0.017258 68.915 By MS/MS 1 1.455 1.4629 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.455 1.4629 NaN 1 1 Median NaN NaN NaN 0 0 Median 1850300 770070 1080300 0 0 0 0 0 0 0 0 0 0 0 0 1850300 770070 1080300 0 0 0 7275 2845 7556 36582 36617 36617 1 ELQSLLVEER VVDSADRQRMQDCQRELQSLLVEERLAGAT QDCQRELQSLLVEERLAGATLLIFANKQDL R E L E R L 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1214.6507 P36404 P36404 105 114 ARL2 ADP-ribosylation factor-like protein 2 yes yes 2 0.015167 55.549 By MS/MS 1 1.5531 1.2888 NaN 1 Median NaN NaN NaN 0 0 Median 1.5531 1.2888 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2917600 1154500 1763000 0 0 0 2917600 1154500 1763000 0 0 0 0 0 0 0 0 0 0 0 0 7276 2254 7557 36583 36618 36618 1 ELQSMADQEK SLLINAVEASCIRTRELQSMADQEKISPAA CIRTRELQSMADQEKISPAALKKTLLDRVK R E L E K I 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 10 0 1177.5285 Q96C36;A0A087WTV6;A0A087WZR9 Q96C36 267 276 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 2 0.03492 46.462 By MS/MS By MS/MS 1 1 3.6148 3.0339 25.039 2 Median NaN NaN NaN 0 0 Median 4.3193 3.6216 NaN 1 1 Median NaN NaN NaN 0 0 Median 3.0251 2.5416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9990400 2347400 7643000 0 0 0 4045600 924510 3121100 0 0 0 5944800 1422900 4521900 0 0 0 0 0 0 7277 3615 7558 36584;36585 36619;36620 36619 2 ELQSMADQEQVSPAAIKK SLLINAVEASCIRTRELQSMADQEQVSPAA SMADQEQVSPAAIKKTILDKVKLDSPAGTA R E L K K T 3 0 0 1 0 3 2 0 0 1 1 2 1 0 1 2 0 0 0 1 0 0 18 1 1971.9935 P32322;E2QRB3 P32322 267 284 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3 0.019529 26.808 By MS/MS By MS/MS By MS/MS 1 1 1 1.2976 1.1693 11.082 3 Median NaN NaN NaN 0 0 Median 1.2976 1.1693 NaN 1 1 Median 1.0949 1.1478 NaN 1 1 Median 1.5975 1.4027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7056600 2881900 4174700 0 0 0 1941000 707060 1233900 3307900 1519300 1788700 1807700 655580 1152100 0 0 0 0 0 0 7278 2218 7559 36586;36587;36588 36621;36622;36623 36623 3 ELQSQIQEAR GYRVATFHDCEDAARELQSQIQEARADLAR EDAARELQSQIQEARADLARRGLRF_____ R E L A R A 1 1 0 0 0 3 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1200.6099 Q9P2X0 Q9P2X0 73 82 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 yes yes 2 0.00069072 96.948 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.1512 1.0241 22.418 5 Median 1.0901 1.0241 NaN 1 0 Median 1.517 1.227 NaN 1 0 Median 1.1512 1.1508 NaN 1 0 Median 1.1956 0.86346 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90728 0.70676 NaN 1 0 Median 16513000 7129100 9383600 4927500 2272000 2655400 7454000 2947800 4506200 1840400 795640 1044800 1819300 900390 918940 0 0 0 471520 213310 258200 7279 4231 7560 36589;36590;36591;36592;36593 36624;36625;36626 36625 3 ELQSQISDTSVVLSMDNSR DEINFLRQLYEEEIRELQSQISDTSVVLSM QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R E L S R S 0 1 1 2 0 2 1 0 0 1 2 0 1 0 0 5 1 0 0 2 0 0 19 0 2108.0056 P05787;CON__P05787;F8VUG2;CON__H-INV:HIT000292931 P05787 234 252 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 5.1801E-71 229.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 5 9 5 4 4 1.219 1.1376 22.275 28 Median 0.97271 0.94678 NaN 1 0 Median 1.1248 1.0009 26.151 5 0 Median 1.1705 1.1511 17.059 9 0 Median 1.3773 1.1872 28.009 5 0 Median 1.3115 1.3083 20.766 4 1 Median 1.2865 1.106 17.292 4 0 Median 495160000 219740000 275410000 6259400 3183900 3075500 8897600 3897100 5000500 412300000 182150000 230150000 31356000 14318000 17038000 33686000 15110000 18576000 2656300 1085100 1571200 + 7280 750 7561;7562 36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621 36627;36628;36629;36630;36631;36632;36633;36634;36635;36636;36637;36638;36639;36640;36641;36642;36643;36644;36645;36646;36647;36648;36649;36650;36651;36652;36653;36654;36655;36656;36657;36658;36659;36660;36661;36662 36640 270 36 ELQSVEQEVR LLGSLYALGIPKASKELQSVEQEVRWRMRK PKASKELQSVEQEVRWRMRKLKYKHLAFLA K E L V R W 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1215.6095 Q969Z0;C9J7P5;C9IZN7 Q969Z0 164 173 TBRG4 Protein TBRG4 yes no 2 0.00051808 117.89 By MS/MS By matching 1 1 1.1437 0.9887 NaN 1 Median NaN NaN NaN 0 0 Median 1.1437 0.9887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17655000 8514100 9141000 0 0 0 16514000 7563900 8950200 0 0 0 0 0 0 0 0 0 1141000 950180 190790 7281 3591 7563 36622;36623 36663;36664 36663 2 ELQTAQAQLSEWR EQLEEEAAARERAGRELQTAQAQLSEWRRR GRELQTAQAQLSEWRRRQEEEAGALEAGEE R E L W R R 2 1 0 0 0 3 2 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 13 0 1558.774 Q7Z406;A0A0C4DFM8;A1L2Z2 Q7Z406 1382 1394 MYH14 Myosin-14 yes no 2 3.0843E-10 107.06 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7282 3242 7564 36624;36625 36665;36666 36665 2 ELQTLHNLR QARQDLKGLEETVAKELQTLHNLRKLFVQD EETVAKELQTLHNLRKLFVQDLATRVKKSA K E L L R K 0 1 1 0 0 1 1 0 1 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1122.6146 O60282;A0A0G2JMZ6;P33176 P33176 792 800 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 0.00028393 138.54 By MS/MS By MS/MS By matching 1 1 1 1.1669 1.0038 2.3822 3 Median 1.0381 1.0038 NaN 1 0 Median 1.1669 0.97002 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1924 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26356000 11753000 14603000 5068600 2396200 2672500 19364000 8467000 10897000 0 0 0 1924100 890100 1034000 0 0 0 0 0 0 7283 2221;1609 7565 36626;36627;36628 36667;36668;36669;36670 36670 4 ELQTLHNLRK QARQDLKGLEETVAKELQTLHNLRKLFVQD ETVAKELQTLHNLRKLFVQDLATRVKKSAE K E L R K L 0 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1250.7095 O60282;A0A0G2JMZ6;P33176 P33176 792 801 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2;3 0.0057724 60.91 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.227 1.1229 26.707 5 Median 1.0793 1.1229 NaN 1 0 Median 1.1892 1.1177 18.75 2 1 Median 1.6962 1.9389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.227 1.0806 NaN 1 0 Median 17097000 8233900 8863600 4301300 2101800 2199600 11269000 5501000 5767900 1075800 424120 651630 0 0 0 0 0 0 451550 207070 244480 7284 2221;1609 7566 36629;36630;36631;36632;36633 36671;36672;36673;36674 36672 4 ELQVLSEQYSQK GLRKQHQSDVEALKRELQVLSEQYSQKCLE LKRELQVLSEQYSQKCLEIGALMRQAEERE R E L Q K C 0 0 0 0 0 3 2 0 0 0 2 1 0 0 0 2 0 0 1 1 0 0 12 0 1450.7304 Q9H2D6 Q9H2D6 2201 2212 TRIOBP TRIO and F-actin-binding protein yes yes 2 0.0041443 44.318 By matching By matching By MS/MS 1 1 2 0.90305 0.82377 16.734 4 Median 0.84514 0.78978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74739 0.77602 NaN 1 0 Median 1.1194 0.97881 18.429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11548000 5957700 5590500 3708700 1837100 1871600 0 0 0 6528300 3673300 2854900 1311100 447190 863960 0 0 0 0 0 0 7285 3941 7567 36634;36635;36636;36637 36675 36675 1 ELQVLTK SYSELIYYFRAPSMKELQVLTKKAEDCFRA YFRAPSMKELQVLTKKAEDCFRAAALASGC K E L T K K 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 Q8IYS1 Q8IYS1 282 288 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 2 0.031276 49.358 By MS/MS 1 0.93815 0.80203 NaN 1 Median NaN NaN NaN 0 0 Median 0.93815 0.80203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2882600 1474500 1408100 0 0 0 2882600 1474500 1408100 0 0 0 0 0 0 0 0 0 0 0 0 7286 3345 7568 36638 36676;36677 36676 2 ELRDEEQTAESIK LACCVAPTNPRFGGKELRDEEQTAESIKNQ GKELRDEEQTAESIKNQMTVKEWEKVFEMS K E L I K N 1 1 0 1 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 13 1 1546.7475 Q14566 Q14566 314 326 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 3.478E-06 134.2 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 0.97558 0.92421 19.372 9 Median 0.74115 0.77149 12.296 2 0 Median 1.1886 1.1782 5.4567 3 0 Median 0.76292 0.86537 5.3795 2 1 Median 1.0153 0.96032 5.4205 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53948000 27623000 26325000 12001000 6578500 5422900 19684000 8366200 11317000 17393000 10077000 7315700 4870600 2601800 2268800 0 0 0 0 0 0 7287 2881 7569 36639;36640;36641;36642;36643;36644;36645;36646;36647 36678;36679;36680;36681;36682;36683;36684;36685;36686;36687 36682 10 ELRDEEQTAESIKNQMTVK LACCVAPTNPRFGGKELRDEEQTAESIKNQ EEQTAESIKNQMTVKEWEKVFEMSQDKNLY K E L V K E 1 1 1 1 0 2 4 0 0 1 1 2 1 0 0 1 2 0 0 1 0 0 19 2 2248.1005 Q14566 Q14566 314 332 MCM6 DNA replication licensing factor MCM6 yes yes 3;4 3.7348E-08 74.505 By MS/MS 2 0.84311 0.95832 24.285 2 Median 0.84311 0.95832 24.285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20616000 11318000 9297800 20616000 11318000 9297800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7288 2881 7570 36648;36649 36688;36689 36688 2 ELRENTQTTIK SLAGGIIGVKGAKIKELRENTQTTIKLFQE AKIKELRENTQTTIKLFQECCPHSTDRVVL K E L I K L 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 3 0 0 0 0 0 11 1 1331.7045 P61978;Q5T6W2 P61978 169 179 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 0.0027568 48.283 By matching By matching By MS/MS By MS/MS 2 2 3 2 1.0503 1.0912 19.656 9 Median 1.0801 1.1032 21.613 2 0 Median NaN NaN NaN 0 0 Median 1.1169 1.2332 8.5541 2 0 Median NaN NaN NaN 0 0 Median 0.84864 0.88198 6.7512 3 0 Median 1.4206 1.2941 24.118 2 0 Median 10825000 5425400 5399200 948430 563940 384490 0 0 0 1017300 490460 526810 0 0 0 5240400 2759500 2480900 3618500 1611600 2007000 7289 2565;3093 7571 36650;36651;36652;36653;36654;36655;36656;36657;36658 36690;36691;36692;36693;36694 36694 5 ELSAALQDK KATQEWLEKQAQLEKELSAALQDKKCLEEK QAQLEKELSAALQDKKCLEEKNEILQGKLS K E L D K K 2 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 0 973.50803 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 365 373 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0075799 51.066 By MS/MS 1 0.66077 0.60152 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66077 0.60152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 972740 585450 387290 0 0 0 0 0 0 0 0 0 972740 585450 387290 0 0 0 0 0 0 7290 2905;77 7572 36659 36695;36696 36695 2 ELSAALQDKK KATQEWLEKQAQLEKELSAALQDKKCLEEK AQLEKELSAALQDKKCLEEKNEILQGKLSQ K E L K K C 2 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1101.603 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 365 374 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00048429 86.67 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1338 1.0798 8.8519 5 Median NaN NaN NaN 0 0 Median 1.2055 1.1408 NaN 1 0 Median 0.93504 1.0798 NaN 1 0 Median 1.2579 1.1749 NaN 1 0 Median 0.87561 0.94546 NaN 1 0 Median 1.1338 1.0118 NaN 1 0 Median 22787000 11548000 11239000 0 0 0 2340600 1097400 1243200 5674200 3068300 2605900 1013400 432960 580420 11513000 5837600 5675700 2245200 1111500 1133700 7291 2905;77 7573 36660;36661;36662;36663;36664 36697;36698;36699;36700;36701;36702;36703 36698 7 ELSANTAAFAK RKLHVSVEALVCHRKELSANTAAFAKSAAM CHRKELSANTAAFAKSAAMLGNSEDHTALS K E L A K S 4 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1121.5717 O60749 O60749 336 346 SNX2 Sorting nexin-2 yes yes 2 0.00013404 86.136 By matching By MS/MS 1 2 0.99893 0.84256 23.116 3 Median 0.72896 0.68077 NaN 1 0 Median 1.1236 0.9541 17.581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16694000 8116800 8577000 3990900 2252600 1738300 12703000 5864200 6838700 0 0 0 0 0 0 0 0 0 0 0 0 7292 1629 7574 36665;36666;36667 36704;36705 36705 2 ELSAVTFPDIIR GGEPDFHAVEPYTKKELSAVTFPDIIRNYK TKKELSAVTFPDIIRNYKVMAAENIPENPL K E L I R N 1 1 0 1 0 0 1 0 0 2 1 0 0 1 1 1 1 0 0 1 0 0 12 0 1359.7398 P42224;J3KPM9 P42224 638 649 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.00016877 86.624 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1002 1.0586 8.3197 6 Median 1.0504 0.99506 NaN 1 0 Median 1.1197 0.98623 4.881 2 0 Median 1.1002 1.1569 3.6088 2 0 Median 1.2872 1.0977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17752000 8398600 9353200 7403400 3532800 3870500 7796700 3625000 4171700 1991700 969950 1021700 560120 270830 289290 0 0 0 0 0 0 7293 2308 7575 36668;36669;36670;36671;36672;36673 36706;36707;36708;36709;36710;36711 36707 6 ELSDFISYLQR PANKKLNPKKYEGGRELSDFISYLQREATN EGGRELSDFISYLQREATNPPVIQEEKPKK R E L Q R E 0 1 0 1 0 1 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 0 11 0 1369.6878 P30101 P30101 472 482 PDIA3 Protein disulfide-isomerase A3 yes yes 2 6.4181E-15 186.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 4 1 3 2 1.247 1.1032 25.331 17 Median 1.0878 1.0286 7.252 3 0 Median 1.2573 1.0698 29.853 4 0 Median 1.1145 1.0925 14.568 4 1 Median 1.3678 1.1778 NaN 1 0 Median 1.6761 1.6948 22.327 3 1 Median 1.4836 1.289 3.2181 2 0 Median 179760000 82488000 97267000 32948000 15468000 17481000 98960000 45457000 53502000 42995000 19754000 23241000 1743900 684550 1059400 1751500 626430 1125100 1356500 498610 857900 7294 2189 7576 36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686;36687;36688;36689;36690 36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722;36723;36724;36725;36726 36723 15 ELSDIAHR ______________________________ LTPEQKKELSDIAHRIVAPGKGILAADEST K E L H R I 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 939.47739 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8 J3KPS3 15 22 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.0053943 76.035 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1764 1.1424 17.589 4 Median 1.3198 1.3133 NaN 1 0 Median 1.1649 1.014 NaN 1 0 Median 1.188 1.2872 NaN 1 0 Median 1.0379 0.92113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53068000 23553000 29515000 9278900 4256900 5022000 39312000 17365000 21947000 3403800 1441200 1962600 1074000 490290 583720 0 0 0 0 0 0 7295 1310 7577 36691;36692;36693;36694 36727;36728;36729;36730;36731;36732;36733;36734 36732 8 ELSDIALR ______________________________ LSAEQKKELSDIALRIVAPGKGILAADESV K E L L R I 1 1 0 1 0 0 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 915.50255 J3KSV6;J3QKP5;A8MVZ9;P09972;C9J8F3;J3QKK1 J3KSV6 15 22 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 2 0.013275 53.351 By MS/MS By matching By matching 1 1 2 0.84279 0.78427 69.482 4 Median 0.70006 0.69533 NaN 1 0 Median 1.0146 0.88458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62176 0.56936 114.75 2 0 Median 15669000 7459700 8209600 7578200 4353300 3224900 6676300 2206500 4469800 0 0 0 0 0 0 0 0 0 1414700 899880 514860 7296 546 7578 36695;36696;36697;36698 36735;36736 36735 2 ELSDLAR ______________________________ MALKRINKELSDLARDPPAQCSAGPVGDDM K E L A R D 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 802.41848 P61077;D6R9F6;D6R933;D6RGD0;D6R980;D6RIZ3;D6RA11;A0A087WY85 P61077 9 15 UBE2D3 Ubiquitin-conjugating enzyme E2 D3 yes no 2 0.0078867 87.582 By matching By matching By MS/MS By MS/MS 2 3 1 2 1.1751 1.0053 20.606 8 Median 0.88817 0.93769 8.2085 2 0 Median 1.1977 1.0171 28.185 3 0 Median 1.2594 1.2771 NaN 1 0 Median 1.29 1.0476 21.621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28787000 13207000 15580000 6134700 2997600 3137100 11940000 5386700 6552900 7287000 3268800 4018200 3425500 1553600 1871800 0 0 0 0 0 0 7297 2541 7579 36699;36700;36701;36702;36703;36704;36705;36706 36737;36738;36739 36738 3 ELSDLESAR SRLLDTIGISQPQWRELSDLESARQFCQTV SQPQWRELSDLESARQFCQTVGYPCVVRPS R E L A R Q 1 1 0 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1018.4931 F8VPD4;P27708 F8VPD4 1004 1012 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0008527 94.302 By MS/MS By MS/MS 1 2 1.0175 0.98858 20.876 3 Median 1.0175 0.98858 NaN 1 0 Median 0.98247 0.8423 26.47 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13563000 6187100 7376300 3696900 1581200 2115700 9866500 4605900 5260600 0 0 0 0 0 0 0 0 0 0 0 0 7298 1057 7580 36707;36708;36709 36740;36741 36740 2 ELSDPAGAIIYTSR SLHDQGAGGNGNVLKELSDPAGAIIYTSRF KELSDPAGAIIYTSRFQLGDPTLNALEIWG K E L S R F 2 1 0 1 0 0 1 1 0 2 1 0 0 0 1 2 1 0 1 0 0 0 14 0 1491.7569 O15067;J3KT98 O15067 528 541 PFAS Phosphoribosylformylglycinamidine synthase yes no 2 6.1735E-08 102.4 By MS/MS 2 1.0485 0.99712 14.299 2 Median 1.0485 0.99712 14.299 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23332000 10997000 12336000 23332000 10997000 12336000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7299 1518 7581 36710;36711 36742;36743;36744 36744 3 ELSDSVTLSSSDR DPILVQTLWQDIIEKELSDSVTLSSSDRMH EKELSDSVTLSSSDRMHALSLKIVLLGKIY K E L D R M 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 5 1 0 0 1 0 0 13 0 1394.6525 O75694;E9PF10 O75694 1228 1240 NUP155 Nuclear pore complex protein Nup155 yes no 2 4.3015E-15 182.28 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.2803 1.0853 3.6501 5 Median 1.1713 1.1325 NaN 1 0 Median 1.2876 1.0853 NaN 1 0 Median 0.93172 1.0241 NaN 1 0 Median 1.2892 1.0912 0.97707 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64492000 29274000 35218000 4890900 2353700 2537200 5486600 2391500 3095100 25318000 12120000 13198000 28796000 12409000 16388000 0 0 0 0 0 0 7300 1692 7582 36712;36713;36714;36715;36716 36745;36746;36747;36748;36749;36750;36751;36752;36753;36754 36748 10 ELSEALGQIFDSQR CTNETRSTHTLDLSRELSEALGQIFDSQRG RELSEALGQIFDSQRGCDLSISVNVQGEDA R E L Q R G 1 1 0 1 0 2 2 1 0 1 2 0 0 1 0 2 0 0 0 0 0 0 14 0 1591.7842 Q08380;K7EP36;K7EJY8;K7ESM3;K7EKQ5 Q08380 138 151 LGALS3BP Galectin-3-binding protein yes no 2 3.8708E-08 105.32 By MS/MS By MS/MS 3 4 1.6493 1.4291 40.839 7 Median 1.2995 1.2496 43.544 3 0 Median 1.8068 1.5725 45.221 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23690000 7961800 15728000 9841700 4092700 5749100 13848000 3869100 9979300 0 0 0 0 0 0 0 0 0 0 0 0 7301 2739 7583 36717;36718;36719;36720;36721;36722;36723 36755;36756;36757;36758;36759;36760;36761 36758 7 ELSEALTR VLPLSQNQEFMPFVKELSEALTRHGVSHKV EFMPFVKELSEALTRHGVSHKVDDSSGSIG K E L T R H 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 917.48181 P41250 P41250 633 640 GARS Glycine--tRNA ligase yes yes 2 0.0063783 71.501 By MS/MS By MS/MS By MS/MS 1 3 1 1.1113 1.0403 8.0622 4 Median 1.1597 1.0973 NaN 1 0 Median 1.1113 0.96124 3.6382 2 1 Median 1.0315 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26520000 12779000 13742000 10590000 5139100 5450700 13594000 6424700 7169600 2336100 1214800 1121300 0 0 0 0 0 0 0 0 0 7302 2301 7584 36724;36725;36726;36727;36728 36762;36763;36764;36765;36766;36767 36765 6 ELSEQIQR LRLQDYEEKTKKAERELSEQIQRALQLEEE KTKKAERELSEQIQRALQLEEERKRAQEEA R E L Q R A 0 1 0 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 1001.5142 P15311;E7EQR4 P15311 364 371 EZR Ezrin yes no 2 0.0024483 134.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 2 1.1983 1.0688 16.666 11 Median 1.1586 1.0995 5.2139 2 0 Median 1.2378 1.0702 23.354 3 0 Plateau 1.0999 1.1334 8.2916 2 0 Median 1.207 1.0237 4.5703 2 0 Median NaN NaN NaN 0 0 Median 1.5143 1.2644 16.784 2 0 Median 108350000 47824000 60522000 25543000 11711000 13833000 30738000 13555000 17184000 37189000 16091000 21098000 12454000 5577600 6876300 0 0 0 2421800 890380 1531400 7303 879 7585 36729;36730;36731;36732;36733;36734;36735;36736;36737;36738;36739 36768;36769;36770;36771;36772;36773;36774;36775;36776;36777;36778;36779;36780 36776 13 ELSEQLGQAER RLSVEDAVKVGLVGRELSEQLGQAERAAAG LVGRELSEQLGQAERAAAGYPDPYSRASLS R E L E R A 1 1 0 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1258.6153 P58107;A0A075B730 P58107 1312 1322 EPPK1 Epiplakin yes no 2 6.9748E-05 151.83 By MS/MS By MS/MS By MS/MS 2 2 2 0.99838 0.85205 15.005 6 Median 1.0659 1.026 3.3029 2 0 Median 0.92396 0.76155 1.6582 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99124 0.85147 14.318 2 1 Median 64155000 32411000 31744000 18400000 8385800 10014000 39748000 20859000 18889000 0 0 0 0 0 0 0 0 0 6006700 3166400 2840400 7304 2520 7586 36740;36741;36742;36743;36744;36745 36781;36782;36783;36784;36785;36786;36787;36788 36784 8 ELSESQVHMMAAAVADGTR SAEQPEQKAATEVSKELSESQVHMMAAAVA SQVHMMAAAVADGTRAATIIEERSPSWISA K E L T R A 4 1 0 1 0 1 2 1 1 0 1 0 2 0 0 2 1 0 0 2 0 0 19 0 2001.9248 Q02952 Q02952 883 901 AKAP12 A-kinase anchor protein 12 yes yes 2;3 2.0795E-08 78.516 By MS/MS By MS/MS 3 3 1.2276 1.0398 24.303 6 Median 1.5172 1.4777 24.57 3 0 Plateau 1.1723 0.99664 18.401 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38463000 15866000 22597000 31177000 12778000 18399000 7285500 3087600 4197900 0 0 0 0 0 0 0 0 0 0 0 0 7305 2705 7587 36746;36747;36748;36749;36750;36751 36789;36790;36791;36792;36793;36794;36795;36796 36792 8 ELSEYVR SVEHFTKYFTEAGLKELSEYVRNQQTIGAR YFTEAGLKELSEYVRNQQTIGARKELQKEL K E L V R N 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 7 0 894.4447 Q7L1Q6;C9IZ80 Q7L1Q6 240 246 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.0096554 83.614 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.09 1.0533 15.786 3 Median 1.09 1.0852 NaN 1 1 Median 1.2111 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94454 0.81439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17805000 8030800 9774500 3609500 1527500 2082000 5357700 2540500 2817200 0 0 0 8405900 3762300 4643600 0 0 0 432210 200510 231700 7306 3219 7588 36752;36753;36754;36755 36797;36798;36799 36799 3 ELSIAIR EQFYGIIRNVDSNNKELSIAIRGYGLFAGP RNVDSNNKELSIAIRGYGLFAGPCKVINAK K E L I R G 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 7 0 800.4756 P78527 P78527 358 364 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0080807 86.838 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 1.8486 1.5435 26.813 8 Median 1.2014 1.1823 NaN 1 0 Median 2.259 1.8927 14.834 3 0 Median 1.1154 1.1746 NaN 1 0 Median 1.9361 1.6971 24.026 2 0 Median NaN NaN NaN 0 0 Median 1.3625 1.1303 NaN 1 0 Median 54332000 21396000 32936000 8882700 4575500 4307200 24739000 7860500 16878000 14142000 6342400 7800000 6232200 2476200 3756000 0 0 0 336140 141060 195070 7307 2647 7589 36756;36757;36758;36759;36760;36761;36762;36763 36800;36801;36802;36803;36804;36805;36806 36801 7 ELSLAGNELGDEGAR CGDLCRVLRAKESLKELSLAGNELGDEGAR ELSLAGNELGDEGARLLCETLLEPGCQLES K E L A R L 2 1 1 1 0 0 3 3 0 0 3 0 0 0 0 1 0 0 0 0 0 0 15 0 1529.7322 P13489;H0YCR7 P13489 288 302 RNH1 Ribonuclease inhibitor yes no 2 5.196E-10 152.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1.1668 1.1466 10.118 6 Median 1.1898 1.1627 NaN 1 0 Median 1.4308 1.2362 10.497 2 0 Median 1.0563 1.0918 6.7942 2 0 Median 1.1442 0.99472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94134000 42322000 51813000 5607000 2263600 3343400 50992000 22523000 28469000 33976000 15822000 18155000 3558700 1713500 1845300 0 0 0 0 0 0 7308 1991 7590 36764;36765;36766;36767;36768;36769;36770 36807;36808;36809;36810;36811;36812;36813;36814 36808 8 ELSLTPITGAKPSATGYLGSVAAK GRPGKPGAGPAQVPRELSLTPITGAKPSAT AKPSATGYLGSVAAKRPLQEDRLLPAEVKA R E L A K R 4 0 0 0 0 0 1 3 0 1 3 2 0 0 2 3 3 0 1 1 0 0 24 1 2331.2686 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 514 537 WIZ Protein Wiz yes no 3 3.0646E-12 58.974 By MS/MS By MS/MS 1 2 0.68774 0.78067 4.0029 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68774 0.79759 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69165 0.75909 3.965 2 0 Median NaN NaN NaN 0 0 Median 27285000 16745000 10541000 0 0 0 0 0 0 14546000 9252800 5292700 0 0 0 12740000 7491900 5248100 0 0 0 7309 656 7591 36771;36772;36773 36815;36816;36817;36818;36819;36820 36816 6 ELSNFYFSIIK DFGKVVRLLRTFYTRELSNFYFSIIKDRLY FYTRELSNFYFSIIKDRLYCEKENDPKRRS R E L I K D 0 0 1 0 0 0 1 0 0 2 1 1 0 2 0 2 0 0 1 0 0 0 11 0 1359.7075 Q9NSE4 Q9NSE4 793 803 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.011706 57.55 By MS/MS By MS/MS 1 2 1.5543 1.3588 24.39 3 Median 1.0941 1.0887 NaN 1 0 Median 1.7513 1.5518 18.777 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5753500 2495400 3258100 2189900 1154100 1035800 3563500 1341300 2222200 0 0 0 0 0 0 0 0 0 0 0 0 7310 4103 7592 36774;36775;36776 36821;36822 36822 2 ELSNSVSTYRPFGLGSESPYK STRSPPPGRDESYPRELSNSVSTYRPFGLG STYRPFGLGSESPYKQPSDGMERPSSLMDS R E L Y K Q 0 1 1 0 0 0 2 2 0 0 2 1 0 1 2 5 1 0 2 1 0 0 21 1 2317.1226 Q5VT52 Q5VT52 781 801 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 5.5185E-09 56.149 By MS/MS By matching By matching 1 1 1 0.6285 0.7536 19.299 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6285 0.7536 NaN 1 0 Median 0.982 0.94801 NaN 1 0 Median 0.56945 0.64603 NaN 1 0 Median NaN NaN NaN 0 0 Median 9727500 5502300 4225200 0 0 0 0 0 0 7048200 3752700 3295500 268600 108670 159920 2410700 1640900 769750 0 0 0 7311 3110 7593 36777;36778;36779 36823 36823 1 ELSPDIAHLASLK LPLLSELAAADNCLRELSPDIAHLASLKTL LRELSPDIAHLASLKTLDLSNNQLSEIPAE R E L L K T 2 0 0 1 0 0 1 0 1 1 3 1 0 0 1 2 0 0 0 0 0 0 13 0 1392.7613 Q8N1G4 Q8N1G4 193 205 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 0.00028587 78.342 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.9344 0.9927 44.675 5 Median 0.98363 0.93297 9.2399 2 0 Median 0.43212 0.37254 NaN 1 0 Median 0.9344 0.9927 NaN 1 0 Median 1.3046 1.1207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21661000 10300000 11361000 15685000 7272500 8412100 1373100 850440 522650 4344400 2070500 2273900 259140 106820 152320 0 0 0 0 0 0 7312 3359 7594 36780;36781;36782;36783;36784 36824;36825;36826;36827;36828;36829 36825 6 ELSPLFLR RALTKFPERVEPRSRELSPLFLRFINNEYY RVEPRSRELSPLFLRFINNEYYPADLQVAP R E L L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 8 0 973.55967 O75691 O75691 841 848 UTP20 Small subunit processome component 20 homolog yes yes 2 0.011113 57.559 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.0448 0.98185 11.13 7 Median NaN NaN NaN 0 0 Median 0.98968 0.88054 NaN 1 0 Median 0.96971 1.072 12.425 2 0 Median 1.1473 0.99672 4.5356 2 0 Median 1.0448 1.0931 NaN 1 0 Median 1.0414 0.85783 NaN 1 0 Median 8407700 3961800 4445900 0 0 0 162650 71541 91112 5768700 2771400 2997400 504340 230190 274150 1885100 847890 1037200 86842 40790 46052 7313 1691 7595 36785;36786;36787;36788;36789;36790;36791 36830;36831;36832;36833;36834;36835;36836 36831 7 ELSPVLTSEVHSVR YPVGEDSLVSDRSKKELSPVLTSEVHSVRA KELSPVLTSEVHSVRAGRHLATKLNILVQQ K E L V R A 0 1 0 0 0 0 2 0 1 0 2 0 0 0 1 3 1 0 0 3 0 0 14 0 1551.8257 Q9NVM9 Q9NVM9 225 238 ASUN Protein asunder homolog yes yes 2;3 3.537E-06 88.075 By matching By MS/MS By MS/MS 1 3 2 1.2201 1.0533 18.623 6 Median 1.215 1.2057 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0142 1.0328 27.436 3 1 Median 1.2329 1.0533 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23037000 10524000 12513000 1358200 464740 893440 0 0 0 20426000 9508900 10917000 1253000 550640 702360 0 0 0 0 0 0 7314 4136 7596 36792;36793;36794;36795;36796;36797 36837;36838;36839;36840 36838 4 ELSQDSTGR EEIDSILNKVEERMKELSQDSTGRVKRLPP VEERMKELSQDSTGRVKRLPPIVRGGAIDR K E L G R V 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 9 0 991.45705 P52788;H7C2R7 P52788 99 107 SMS Spermine synthase yes no 2 0.041602 33.263 By MS/MS 1 1.1119 0.98859 NaN 1 Median NaN NaN NaN 0 0 Median 1.1119 0.98859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 393970 194150 199810 0 0 0 393970 194150 199810 0 0 0 0 0 0 0 0 0 0 0 0 7315 2459 7597 36798 36841 36841 1 ELSQIEAELNK SRELWTILLGRSALRELSQIEAELNKHWRR SALRELSQIEAELNKHWRRLLEGLSYYKPP R E L N K H 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1272.6561 Q5SRE5;H7C4K7 Q5SRE5 28 38 NUP188 Nucleoporin NUP188 homolog yes no 2 0.00075509 63.216 By MS/MS By MS/MS 2 1 0.99585 0.99488 0.41624 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90477 0.99781 NaN 1 0 Median 1.0961 0.99195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16406000 7599300 8806500 0 0 0 0 0 0 14210000 6542600 7667000 2196200 1056700 1139400 0 0 0 0 0 0 7316 3074 7598 36799;36800;36801 36842;36843;36844 36843 3 ELSQLQAAQEK KSCKQLEEEKEILQKELSQLQAAQEKQKTG ILQKELSQLQAAQEKQKTGTVMDTKVDELT K E L E K Q 2 0 0 0 0 3 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1243.6408 P49454 P49454 2815 2825 CENPF Centromere protein F yes yes 2 0.00019593 75.294 By MS/MS 1 0.90587 0.98035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90587 0.98035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3632100 1689300 1942800 0 0 0 0 0 0 3632100 1689300 1942800 0 0 0 0 0 0 0 0 0 7317 2383 7599 36802 36845;36846 36846 2 ELSQNTDESGLNDEAIAK SVQRSNKKMVASKRKELSQNTDESGLNDEA QNTDESGLNDEAIAKQLQLDEDAELERQLH K E L A K Q 2 0 2 2 0 1 3 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 18 0 1932.8912 P35251;A0A1W2PP02 P35251 188 205 RFC1 Replication factor C subunit 1 yes no 2 2.1379E-12 134.98 By matching By matching By MS/MS By MS/MS 2 1 1 1 0.98541 0.94868 22.57 5 Median 0.96079 0.93707 1.7418 2 0 Median 0.80793 0.70458 NaN 1 0 Median 1.1015 1.1767 NaN 1 0 Median 1.4687 1.2446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22186000 11014000 11172000 7195800 3360400 3835400 1453900 790390 663510 11607000 6096300 5511200 1929300 767200 1162100 0 0 0 0 0 0 7318 2239 7600 36803;36804;36805;36806;36807 36847;36848;36849 36848 3 ELSSFIQK SSTACLNAKGPQLTRELSSFIQKGQELCAD KGPQLTRELSSFIQKGQELCADYSENTFTE R E L Q K G 0 0 0 0 0 1 1 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 950.5073 CON__Q3MHN5 CON__Q3MHN5 394 401 yes yes 2 0.043414 54.549 By MS/MS 1 0.24635 0.23216 NaN 1 Median 0.24635 0.23216 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5468200 4352600 1115700 5468200 4352600 1115700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7319 776 7601 36808 36850 36850 1 ELSSTEAQLHDAQELLQEETR GALNEAESKTIRLSKELSSTEAQLHDAQEL AQLHDAQELLQEETRAKLALGSRVRAMEAE K E L T R A 2 1 0 1 0 3 5 0 1 0 4 0 0 0 0 2 2 0 0 0 0 0 21 0 2426.1561 Q7Z406;A0A0C4DFM8 Q7Z406 1326 1346 MYH14 Myosin-14 yes no 3 2.2222E-18 84.919 By MS/MS By MS/MS 1 1 0.9158 0.82276 7.1411 2 Median 0.91656 0.86537 NaN 1 1 Median 0.91505 0.78224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11132000 6151800 4980500 6662500 4038600 2624000 4469800 2113200 2356600 0 0 0 0 0 0 0 0 0 0 0 0 7320 3242 7602 36809;36810 36851;36852 36851 2 ELSTDAQWGIR LASLYQEIEMGLKFRELSTDAQWGIRLGKL LKFRELSTDAQWGIRLGKLGISFQPVFRQH R E L I R L 1 1 0 1 0 1 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 11 0 1274.6255 P50748 P50748 1400 1410 KNTC1 Kinetochore-associated protein 1 yes yes 2 0.00019545 75.378 By MS/MS By MS/MS By matching 1 1 1 1.0352 1.0302 2.4724 3 Plateau 1.0352 1.035 NaN 1 0 Median 1.1595 0.98714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0006 1.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median 11475000 5768100 5706500 5517200 2567100 2950100 862060 489090 372970 0 0 0 0 0 0 5095400 2711900 2383500 0 0 0 7321 2420 7603 36811;36812;36813 36853;36854 36853 2 ELSTTLNADEAVTR RIPAVKEKISKFFGKELSTTLNADEAVTRG KELSTTLNADEAVTRGCALQCAILSPAFKV K E L T R G 2 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 3 0 0 1 0 0 14 0 1518.7526 P34932;A0A087WYC1;A0A087WTS8 P34932 361 374 HSPA4 Heat shock 70 kDa protein 4 yes no 2 5.7236E-11 156.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 1 1 1 1.1435 1.0554 9.0594 11 Median 1.1251 1.0636 6.1831 5 1 Median 1.1435 0.99243 5.5183 3 2 Median 1.1672 1.2347 NaN 1 0 Median 1.1663 0.98785 NaN 1 0 Median 1.157 1.2146 NaN 1 1 Median NaN NaN NaN 0 0 Median 254400000 115440000 138970000 172650000 78570000 94084000 39134000 17587000 21547000 26633000 12017000 14616000 11554000 5099900 6454000 4427600 2163400 2264200 0 0 0 7322 2230 7604 36814;36815;36816;36817;36818;36819;36820;36821;36822;36823;36824 36855;36856;36857;36858;36859;36860;36861;36862;36863;36864;36865;36866;36867;36868;36869;36870;36871;36872;36873;36874 36855 20 ELSVEEQIK QKSQDVELWEGEVVKELSVEEQIKRNRYYD EGEVVKELSVEEQIKRNRYYDEDEDEE___ K E L I K R 0 0 0 0 0 1 3 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1073.5605 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 739 747 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0035603 64.265 By MS/MS By MS/MS 1 1 0.93597 0.9118 1.8238 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82258 0.90012 NaN 1 0 Median 1.065 0.92364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5456200 2600000 2856300 0 0 0 0 0 0 2964400 1444600 1519800 2491800 1155400 1336500 0 0 0 0 0 0 7323 4273 7605 36825;36826 36875;36876;36877 36876 3 ELSVEEQIKR QKSQDVELWEGEVVKELSVEEQIKRNRYYD GEVVKELSVEEQIKRNRYYDEDEDEE____ K E L K R N 0 1 0 0 0 1 3 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 1 1229.6616 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 739 748 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 0.00011654 73.985 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1 1 0.90886 1.0038 24.836 10 Median 0.87246 0.90313 15.602 2 0 Median 0.88212 0.88573 NaN 1 0 Median 0.89173 1.0128 33.544 3 0 Median 1.301 1.2382 30.333 2 0 Median 0.76735 0.84679 NaN 1 1 Median 1.2211 1.0692 NaN 1 0 Median 22081000 11905000 10176000 2846400 1471400 1375000 722850 343120 379730 9781900 5563300 4218600 4506600 2114900 2391700 3294900 1997900 1297000 928600 414380 514220 7324 4273 7606 36827;36828;36829;36830;36831;36832;36833;36834;36835;36836 36878;36879;36880;36881;36882;36883;36884;36885;36886;36887 36887 10 ELTAPDENIPAK FRTYNASITLQQQLKELTAPDENIPAKILS QLKELTAPDENIPAKILSYNRANRAVAILC K E L A K I 2 0 1 1 0 0 2 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 12 0 1296.6561 P11387 P11387 604 615 TOP1 DNA topoisomerase 1 yes yes 2 3.3934E-06 117.31 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 1 2 0.80422 0.75602 63.34 12 Median NaN NaN NaN 0 0 Median 0.073094 0.090153 NaN 1 0 Median 0.6978 0.70574 16.983 4 0 Median 0.91359 0.78826 28.044 4 0 Median 0.74079 0.75951 NaN 1 0 Median 0.92296 0.75517 5.6513 2 0 Median 196020000 110670000 85358000 0 0 0 5785100 5528200 256900 125340000 72172000 53170000 46631000 22972000 23659000 7986300 4693400 3292900 10280000 5301300 4978900 7325 1962 7607 36837;36838;36839;36840;36841;36842;36843;36844;36845;36846;36847;36848 36888;36889;36890;36891;36892;36893;36894;36895;36896;36897;36898;36899;36900;36901;36902;36903;36904;36905;36906;36907;36908;36909;36910;36911 36902 24 ELTAQIAAGR LESDSVREDLLRRERELTAQIAAGRAEGSE LRRERELTAQIAAGRAEGSEAAELAEIYAK R E L G R A 3 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1028.5615 Q9NUQ8 Q9NUQ8 270 279 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 2 0.008521 61.999 By MS/MS By MS/MS By MS/MS 2 1 1 1.3304 1.153 11.241 3 Plateau NaN NaN NaN 0 0 Median 1.1841 1.0395 1.9872 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4731 1.261 NaN 1 0 Median 4187200 1678300 2508900 0 0 0 3064000 1226800 1837200 0 0 0 0 0 0 0 0 0 1123200 451530 671680 7326 4119 7608 36849;36850;36851;36852 36912;36913;36914;36915 36912 3 ELTAVVQK TRTQNVLGEKGRRIRELTAVVQKRFGFPEG EKGRRIRELTAVVQKRFGFPEGSVELYAEK R E L Q K R 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 886.51238 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 68 75 RPS3 40S ribosomal protein S3 yes no 2 0.0035672 88.35 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 2 1 1 1.1926 1.0198 9.7382 10 Median 1.1196 1.0183 NaN 1 0 Median 1.2172 1.0154 4.2218 3 0 Plateau 1.2628 1.2014 11.766 2 0 Median 1.3432 1.1149 6.7832 2 0 Median 0.96907 0.99592 NaN 1 0 Median 1.2189 1.015 NaN 1 1 Median 60479000 27196000 33283000 18923000 8432000 10491000 24535000 11124000 13411000 8296900 3703700 4593200 4207200 1801900 2405300 1337400 646280 691080 3179600 1488600 1690900 7327 2112 7609 36853;36854;36855;36856;36857;36858;36859;36860;36861;36862 36916;36917;36918;36919;36920;36921;36922;36923;36924;36925;36926;36927 36922 12 ELTAVVQKR TRTQNVLGEKGRRIRELTAVVQKRFGFPEG KGRRIRELTAVVQKRFGFPEGSVELYAEKV R E L K R F 1 1 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1042.6135 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 68 76 RPS3 40S ribosomal protein S3 yes no 2 0.0023077 79.469 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 1 1.2311 1.2957 15.779 9 Median 1.2969 1.2989 15.815 2 0 Median 1.2022 1.0816 12.629 3 0 Median 1.2916 1.3268 NaN 1 0 Median 1.2031 1.0997 30.575 2 0 Median 1.2311 1.2957 NaN 1 0 Median NaN NaN NaN 0 0 Median 18627000 8694900 9932300 10732000 5268400 5463500 3788400 1702500 2085900 1987100 776470 1210700 962200 445100 517090 1157500 502400 655090 0 0 0 7328 2112 7610 36863;36864;36865;36866;36867;36868;36869;36870;36871 36928;36929;36930;36931;36932;36933;36934;36935 36935 8 ELTDEEAER LAKEAKSETSGPQIKELTDEEAERLQLEID SGPQIKELTDEEAERLQLEIDQKKDAENHE K E L E R L 1 1 0 1 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1090.4778 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 106 114 NUDC Nuclear migration protein nudC yes no 2 0.0029859 68.224 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 1.0925 0.95784 18.872 7 Median 1.0458 1.0443 NaN 1 0 Median 0.98632 0.85317 15.663 2 0 Median NaN NaN NaN 0 0 Median 1.1815 1.0483 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1567 0.95784 27.051 3 0 Median 17906000 8497700 9408200 3006200 1351700 1654400 11880000 5704500 6175800 0 0 0 1053100 473730 579380 0 0 0 1966400 967810 998590 7329 4376 7611 36872;36873;36874;36875;36876;36877;36878 36936;36937;36938;36939;36940;36941;36942;36943;36944 36939 9 ELTEEKESAFEFLSSA PINDFSREKMDLTAKELTEEKESAFEFLSS LTEEKESAFEFLSSA_______________ K E L S A - 2 0 0 0 0 0 5 0 0 0 2 1 0 2 0 3 1 0 0 0 0 0 16 1 1815.8414 P40925;B9A041;B8ZZ51 P40925 319 334 MDH1 Malate dehydrogenase, cytoplasmic yes no 2 1.9684E-06 96.015 By MS/MS By matching By matching By matching 2 1 1 1 1.0778 0.97844 5.6295 5 Median 0.99687 0.94732 4.5711 2 0 Median 1.1652 0.97968 NaN 1 0 Median 0.99971 0.95617 NaN 1 0 Median 1.2567 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38897000 17746000 21151000 27130000 12445000 14684000 8092100 3530500 4561600 3393300 1647100 1746200 281730 123310 158420 0 0 0 0 0 0 7330 2291 7612 36879;36880;36881;36882;36883 36945 36945 1 ELTIEFSKPLLPVGR ELVTPMLKEGGISMRELTIEFSKPLLPVGR ELTIEFSKPLLPVGRAGVLLSEILHLLCKQ R E L G R A 0 1 0 0 0 0 2 1 0 1 3 1 0 1 2 1 1 0 0 1 0 0 15 1 1697.9716 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1526 1540 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2;3 1.396E-07 123.8 By matching By MS/MS 1 2 0.74528 0.70154 2.0894 3 Median 0.66941 0.68517 NaN 1 0 Median 0.75146 0.7079 1.277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16038000 9158400 6879400 1375800 680340 695460 14662000 8478000 6184000 0 0 0 0 0 0 0 0 0 0 0 0 7331 300 7613 36884;36885;36886 36946;36947;36948 36947 3 ELTLENSELKK QLLLEEIKSSKDQLKELTLENSELKKSLDC DQLKELTLENSELKKSLDCMHKDQVEKEGK K E L K K S 0 0 1 0 0 0 3 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 11 1 1302.7031 P49454;A0A087WTY4 P49454 2666 2676 CENPF Centromere protein F yes no 2 0.0038722 69.375 By MS/MS 1 0.53686 0.60965 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53686 0.60965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4811900 2846000 1965800 0 0 0 0 0 0 4811900 2846000 1965800 0 0 0 0 0 0 0 0 0 7332 2383 7614 36887 36949 36949 1 ELTLLGKPK IMDKHLKRKAMTKKKELTLLGKPKRPRSAY AMTKKKELTLLGKPKRPRSAYNVYVAERFQ K E L P K R 0 0 0 0 0 0 1 1 0 0 3 2 0 0 1 0 1 0 0 0 0 0 9 1 997.61718 Q00059;H7BYN3 Q00059 148 156 TFAM Transcription factor A, mitochondrial yes no 2 0.008834 76.774 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.86038 0.87523 15.855 5 Median 0.69965 0.71172 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86038 0.85305 NaN 1 0 Median 1.1072 0.99845 NaN 1 0 Median 0.81092 0.87523 NaN 1 0 Median 1.2376 1.0741 NaN 1 0 Median 149870000 80649000 69225000 7473100 4261100 3212000 0 0 0 62848000 32920000 29928000 20069000 10217000 9852000 49296000 28680000 20615000 10190000 4571200 5618500 7333 2673 7615 36888;36889;36890;36891;36892 36950;36951;36952;36953;36954;36955;36956;36957;36958 36951 9 ELTLQDVELLK TADEEEPELTASLPRELTLQDVELLKVGHV SLPRELTLQDVELLKVGHVGPLQIGQAVKK R E L L K V 0 0 0 1 0 1 2 0 0 0 4 1 0 0 0 0 1 0 0 1 0 0 11 0 1299.7286 Q13049 Q13049 272 282 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes yes 2 0.00020133 103.55 By matching By MS/MS By matching 1 1 1 1.2847 1.1067 12.903 3 Median 1.3509 1.3101 NaN 1 0 Median 1.2847 1.1067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1932 1.0168 NaN 1 0 Median 4005200 1920500 2084800 667780 404080 263700 2786000 1277700 1508400 0 0 0 0 0 0 0 0 0 551390 238700 312690 7334 2782 7616 36893;36894;36895 36959 36959 1 ELTMASLPFTFDVER FIFLRLNVLREYLERELTMASLPFTFDVER ELTMASLPFTFDVERSIDDWVFMCFFVGND R E L E R S 1 1 0 1 0 0 2 0 0 0 2 0 1 2 1 1 2 0 0 1 0 0 15 0 1754.8549 Q9H0D6 Q9H0D6 316 330 XRN2 5-3 exoribonuclease 2 yes yes 2 2.3828E-10 110.66 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 1 1 1 0.8973 0.8719 13.613 8 Median 1.0883 1.0743 4.2469 2 0 Median 0.96851 0.85161 NaN 1 0 Median 0.79269 0.84579 7.6304 2 0 Median 0.85095 0.74849 NaN 1 0 Median 0.86366 0.90273 NaN 1 0 Median 0.93225 0.79005 NaN 1 0 Median 20930000 10600000 10330000 3529100 1546700 1982400 1468700 689590 779130 10594000 5489400 5104500 224580 112820 111760 4965400 2680900 2284400 148370 80838 67534 7335 3924 7617;7618 36896;36897;36898;36899;36900;36901;36902;36903 36960;36961;36962;36963;36964;36965;36966 36964 1852 7 ELTNQQEASVER KKYRQLTAHLQDVNRELTNQQEASVERQQQ VNRELTNQQEASVERQQQPPPETFDFKIKF R E L E R Q 1 1 1 0 0 2 3 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1402.6688 E7EX90;Q14203;Q6AWB1 E7EX90 516 527 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 2.8842E-10 179.8 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1 3 1.2192 1.0726 27.105 9 Median 0.97734 0.96737 14.607 2 0 Median 1.097 0.95546 8.626 2 0 Median 0.9474 1.0248 NaN 1 1 Median 2.1674 1.8509 NaN 1 0 Median 1.5101 1.7677 NaN 1 0 Median 1.4008 1.1641 8.1459 2 1 Median 26122000 11264000 14858000 4690400 2219500 2470900 16167000 6907400 9259700 1207100 528400 678720 879860 281230 598640 1749400 742940 1006400 1427900 584560 843370 7336 906 7619 36904;36905;36906;36907;36908;36909;36910;36911;36912;36913;36914 36967;36968;36969;36970;36971;36972;36973;36974;36975;36976;36977 36977 11 ELTPQVVSAAR KSTVEGIQASVKTARELTPQVVSAARILLR KTARELTPQVVSAARILLRNPGNQAAYEHF R E L A R I 2 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 11 0 1169.6404 P18206 P18206 670 680 VCL Vinculin yes yes 2 8.9213E-06 104.01 By MS/MS By MS/MS By MS/MS 1 2 1 0.7958 0.75376 5.1999 3 Plateau NaN NaN NaN 0 0 Median 0.85306 0.72052 6.3776 2 0 Median 0.6851 0.75356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51834000 26762000 25072000 0 0 0 46252000 23623000 22629000 5581400 3138300 2443100 0 0 0 0 0 0 0 0 0 7337 2057 7620 36915;36916;36917;36918 36978;36979;36980;36981;36982;36983;36984 36978 7 ELTSVYDSR PTPSSTFFQAELWIKELTSVYDSRARERLR AELWIKELTSVYDSRARERLRQIEEQKALA K E L S R A 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 1 0 1 1 0 0 9 0 1068.5088 Q9P0U3 Q9P0U3 344 352 SENP1 Sentrin-specific protease 1 yes yes 2 0.011103 47.603 By MS/MS By matching 2 1 1.1233 1.1434 21.9 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94416 0.97635 22.34 2 0 Median 1.5105 1.2697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8883200 4153600 4729600 0 0 0 0 0 0 8239500 3938700 4300800 643670 214940 428730 0 0 0 0 0 0 7338 4209 7621 36919;36920;36921 36985 36985 1 ELTTEIDNNIEQISSYK QNRKDAEAWFNEKSKELTTEIDNNIEQISS TTEIDNNIEQISSYKSEITELRRNVQALEI K E L Y K S 0 0 2 1 0 1 3 0 0 3 1 1 0 0 0 2 2 0 1 0 0 0 17 0 1995.9637 P13645;CON__P13645 P13645 346 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 8.0898E-40 134.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 7 4 9 0.039623 0.038374 95.219 20 Median 0.038712 0.037697 17.484 3 3 Median 0.0369 0.032042 57.255 2 2 Median 0.032036 0.035041 73.951 5 5 Median 0.01387 0.011906 179.82 3 3 Median 0.050295 0.050095 91.798 7 7 Median NaN NaN NaN 0 0 Median 180060000 175560000 4493500 49820000 48159000 1661700 13860000 13604000 256040 43337000 42593000 744200 17117000 16986000 131420 55921000 54221000 1700200 0 0 0 + 7339 756 7622 36922;36923;36924;36925;36926;36927;36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946;36947;36948;36949;36950;36951;36952 36986;36987;36988;36989;36990;36991;36992;36993;36994;36995;36996;36997;36998;36999;37000;37001;37002;37003;37004;37005;37006;37007;37008;37009;37010;37011;37012;37013;37014;37015;37016 36993 31 ELTTEIDNNIEQISSYKSEITELRR QNRKDAEAWFNEKSKELTTEIDNNIEQISS EQISSYKSEITELRRNVQALEIELQSQLAL K E L R R N 0 2 2 1 0 1 5 0 0 4 2 1 0 0 0 3 3 0 1 0 0 0 25 2 2980.4989 P13645;CON__P13645 P13645 346 370 KRT10 Keratin, type I cytoskeletal 10 yes no 4 0.0012429 33.425 By MS/MS 1 0.46095 0.44449 NaN 1 Median NaN NaN NaN 0 0 Median 0.46095 0.44449 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1841300 1410000 431300 0 0 0 1841300 1410000 431300 0 0 0 0 0 0 0 0 0 0 0 0 + 7340 756 7623 36953 37017 37017 1 ELTVDNSFEFEK RKVRWTKAFRKAAGKELTVDNSFEFEKRRN AGKELTVDNSFEFEKRRNEPIKYQRELWNK K E L E K R 0 0 1 1 0 0 3 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1456.6722 Q9UHA3;H3BMQ2 Q9UHA3 62 73 RSL24D1 Probable ribosome biogenesis protein RLP24 yes no 2 4.28E-06 117.67 By matching By MS/MS By matching 1 1 2 1.1604 1.1163 19.012 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4337 1.2295 NaN 1 0 Median 1.118 1.2394 NaN 1 0 Median 1.1133 0.91699 14.152 2 0 Median 17562000 8234500 9327200 0 0 0 0 0 0 0 0 0 356540 145830 210710 14929000 7126800 7802300 2276100 961890 1314300 7341 4272 7624 36954;36955;36956;36957 37018;37019;37020 37019 3 ELTVDNSFEFEKR RKVRWTKAFRKAAGKELTVDNSFEFEKRRN GKELTVDNSFEFEKRRNEPIKYQRELWNKT K E L K R R 0 1 1 1 0 0 3 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 1 1612.7733 Q9UHA3;H3BMQ2 Q9UHA3 62 74 RSL24D1 Probable ribosome biogenesis protein RLP24 yes no 2;3 1.0588E-06 112.13 By MS/MS By matching 2 2 1.2386 1.1764 38.672 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81827 0.92178 20.655 2 0 Median 1.9041 1.6114 30.658 2 0 Median 9617600 4249400 5368200 0 0 0 0 0 0 0 0 0 0 0 0 8409800 3845000 4564800 1207800 404440 803380 7342 4272 7625 36958;36959;36960;36961 37021;37022 37022 2 ELTVSNNDINEAGVR CEPLASVLRAKPDFKELTVSNNDINEAGVR ELTVSNNDINEAGVRVLCQGLKDSPCQLEA K E L V R V 1 1 3 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 15 0 1629.7958 P13489;E9PMJ3;E9PLZ3;E9PIM9 P13489 174 188 RNH1 Ribonuclease inhibitor yes no 2 1.4897E-35 210.87 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 2 1.1635 1.0527 11.677 11 Median 1.0851 1.0522 4.1431 2 0 Median 1.2075 1.0388 5.1667 4 0 Median 1.1297 1.1666 15.869 2 0 Median 1.146 0.98758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4609 1.2152 20.295 2 0 Median 132840000 61278000 71566000 54409000 24333000 30077000 32186000 14363000 17823000 34476000 17094000 17382000 9669300 4853900 4815500 0 0 0 2103100 634270 1468800 7343 1991 7626 36962;36963;36964;36965;36966;36967;36968;36969;36970;36971;36972 37023;37024;37025;37026;37027;37028;37029;37030;37031;37032;37033;37034;37035;37036;37037;37038;37039 37027 17 ELVAHLR NYASKVLLDFLMEEKELVAHLRSIKRYFLM LDFLMEEKELVAHLRSIKRYFLMDQGDFFV K E L L R S 1 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 836.48684 Q9BSJ2;F2Z2B9;B3KTU7 Q9BSJ2 508 514 TUBGCP2 Gamma-tubulin complex component 2 yes no 2 0.040961 44.611 By MS/MS 1 1.2732 1.0823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2732 1.0823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 465490 247050 218440 0 0 0 0 0 0 0 0 0 465490 247050 218440 0 0 0 0 0 0 7344 3815 7627 36973 37040 37040 1 ELVALMSAIR PSVKLTYTAEVSVPKELVALMSAIRDGETP VSVPKELVALMSAIRDGETPDPEDPSRKIY K E L I R D 2 1 0 0 0 0 1 0 0 1 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1101.6216 P09960 P09960 166 175 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.00039551 88.37 By MS/MS By MS/MS By matching 1 2 1 1.161 1.0513 22.948 4 Median 1.1424 1.0834 NaN 1 0 Median 1.2313 1.0693 6.6532 2 0 Median 0.64145 0.68322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29186000 12760000 16427000 13129000 5691300 7437900 15261000 6571400 8689900 795960 497190 298770 0 0 0 0 0 0 0 0 0 7345 1924 7628 36974;36975;36976;36977 37041;37042;37043 37041 3 ELVASAGLDR THKDYVKALAYAKDKELVASAGLDRQIFLW YAKDKELVASAGLDRQIFLWDVNTLTALTA K E L D R Q 2 1 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1029.5455 Q8TAF3;C9JC24 Q8TAF3 130 139 WDR48 WD repeat-containing protein 48 yes no 2 0.03492 46.462 By MS/MS 1 0.89298 0.76378 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89298 0.76378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 669900 308590 361320 0 0 0 0 0 0 0 0 0 669900 308590 361320 0 0 0 0 0 0 7346 3453 7629 36978 37044 37044 1 ELVDYFLNVATAQGR QPLVEDPRSPEYNAKELVDYFLNVATAQGR ELVDYFLNVATAQGRYYRTNHTVMTMGSDF K E L G R Y 2 1 1 1 0 1 1 1 0 0 2 0 0 1 0 0 1 0 1 2 0 0 15 0 1694.8628 O00754 O00754 291 305 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes yes 2 0.00078576 58.676 By MS/MS 1 1.0463 0.91069 NaN 1 Median NaN NaN NaN 0 0 Median 1.0463 0.91069 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 889060 404600 484460 0 0 0 889060 404600 484460 0 0 0 0 0 0 0 0 0 0 0 0 7347 1477 7630 36979 37045 37045 1 ELVEGEMK DDDADNLQESLSDSRELVEGEMKELPEQLQ ESLSDSRELVEGEMKELPEQLQEHAIEDKE R E L M K E 0 0 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 933.44773 Q15424 Q15424 165 172 SAFB Scaffold attachment factor B1 yes yes 2 0.028877 60.682 By MS/MS 1 1.4153 1.4472 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4153 1.4472 NaN 1 1 Median NaN NaN NaN 0 0 Median 10206000 4144000 6062200 0 0 0 0 0 0 0 0 0 0 0 0 10206000 4144000 6062200 0 0 0 7348 2951 7631 36980 37046 37046 1 ELVEPVSR PYPSVLNEEQTQFLKELVEPVSRFFEEVND EQTQFLKELVEPVSRFFEEVNDPAKNDALE K E L S R F 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 8 0 927.50255 P49748;K7EQP4;K7EJW8;J3KS89 P49748 104 111 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0034385 96.19 By MS/MS By MS/MS 1 1 0.79337 0.72454 17.604 2 Median 0.66347 0.63973 NaN 1 0 Median 0.9487 0.82058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18346000 9654800 8691100 6415600 3829600 2586000 11930000 5825200 6105100 0 0 0 0 0 0 0 0 0 0 0 0 7349 2394 7632 36981;36982 37047;37048;37049;37050 37050 4 ELVFKEDGQEYAQVIK KNRRRGKNENESEKRELVFKEDGQEYAQVI LVFKEDGQEYAQVIKMLGNGRLEAMCFDGV R E L I K M 1 0 0 1 0 2 3 1 0 1 1 2 0 1 0 0 0 0 1 2 0 0 16 1 1894.9676 P47813;O14602;A6NJH9 P47813 25 40 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2;3 8.1383E-10 161.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 4 3 1 1 1.1081 1.0683 16.929 14 Median 1.078 1.0381 16.149 3 0 Plateau 1.0917 0.96537 14.209 2 0 Median 1.0909 0.93401 16.397 4 0 Median 1.262 1.1352 1.8476 3 0 Median 1.2743 1.465 NaN 1 0 Median 1.2059 1.0171 NaN 1 0 Median 248940000 125080000 123860000 43009000 20501000 22508000 8087000 4527800 3559100 189250000 95984000 93268000 3262700 1507800 1755000 4658300 2257000 2401300 670520 306070 364450 7350 2355 7633 36983;36984;36985;36986;36987;36988;36989;36990;36991;36992;36993;36994;36995;36996 37051;37052;37053;37054;37055;37056;37057;37058;37059;37060;37061 37058 11 ELVGPPLAETVFTPK AKKCVSCQNLNPSNKELVGPPLAETVFTPK ELVGPPLAETVFTPKTSPENVQDRFALVTP K E L P K T 1 0 0 0 0 0 2 1 0 0 2 1 0 1 3 0 2 0 0 2 0 0 15 0 1596.8763 P49792 P49792 1384 1398 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 4.6488E-10 121.02 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 1 0.69941 0.68371 14.138 9 Median 0.83979 0.83373 NaN 1 1 Median 0.82081 0.7194 7.1973 2 0 Median 0.60201 0.64043 15.428 3 0 Plateau 0.73535 0.68684 3.5764 2 1 Median 0.64697 0.68571 NaN 1 0 Median NaN NaN NaN 0 0 Median 77544000 46733000 30811000 3634700 2039300 1595400 1846100 970690 875400 67386000 40855000 26532000 2778100 1662000 1116100 1898900 1206800 692140 0 0 0 7351 2401 7634 36997;36998;36999;37000;37001;37002;37003;37004;37005 37062;37063;37064;37065;37066;37067;37068;37069;37070;37071;37072;37073;37074;37075;37076 37066 15 ELVGQAQVPPDSELTPCLR QMALHANVSGGGSRRELVGQAQVPPDSELT QAQVPPDSELTPCLRPQMASQVHHSRSNPT R E L L R P 1 1 0 1 1 2 2 1 0 0 3 0 0 0 3 1 1 0 0 2 0 0 19 0 2108.0572 A0A2R8Y7X5 A0A2R8Y7X5 1662 1680 yes yes 2 0.039587 21.301 By matching By matching By MS/MS 1 1 1 0.93979 0.99071 2.0117 3 Median NaN NaN NaN 0 0 Median 1.1246 0.99503 NaN 1 0 Median 0.90888 0.99071 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93979 0.95907 NaN 1 0 Median NaN NaN NaN 0 0 Median 53285000 25005000 28281000 0 0 0 409010 163320 245690 31360000 15912000 15448000 0 0 0 21517000 8929800 12587000 0 0 0 7352 384 7635 37006;37007;37008 37077;37078 37077 2 ELVHIKPDQSNVR MTETWDPSHAPDNFRELVHIKPDQSNVRRM FRELVHIKPDQSNVRRMHTAVKLNEVIVTR R E L V R R 0 1 1 1 0 1 1 0 1 1 1 1 0 0 1 1 0 0 0 2 0 0 13 1 1533.8263 I3L4N6;Q9UP95 I3L4N6 957 969 SLC12A4 Solute carrier family 12 member 4 yes no 3 0.00062216 49.627 By MS/MS 1 0.77529 0.79373 NaN 1 Median 0.77529 0.79373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603500 1338300 1265200 2603500 1338300 1265200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7353 1293 7636 37009 37079;37080 37079 2 ELVITIAR NSDFYRRMQNSDFLRELVITIAREGLEDKY QNSDFLRELVITIAREGLEDKYNLQLNPEW R E L A R E 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 M0R2P8;M0R3A4;M0QYA2;Q9NWS0;M0QXD5;M0QZ61;M0QZZ1;M0R028;M0QZM3;M0QYF4 M0R2P8 21 28 PIH1D1 PIH1 domain-containing protein 1 yes no 2 0.01208 55.676 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0665 0.96297 1.417 4 Median 1.0119 0.95564 NaN 1 0 Median 1.1226 0.94662 NaN 1 0 Median 1.0133 0.97035 NaN 1 0 Median 1.1596 0.97651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8606000 4252900 4353100 5275200 2624800 2650300 1827600 844400 983180 1246200 649660 596540 257040 133980 123060 0 0 0 0 0 0 7354 1414 7637 37010;37011;37012;37013 37081;37082;37083;37084 37081 4 ELVKDKEEIK MKIEELRLQELKLNRELVKDKEEIKYLNNI LKLNRELVKDKEEIKYLNNIISEYERTISS R E L I K Y 0 0 0 1 0 0 3 0 0 1 1 3 0 0 0 0 0 0 0 1 0 0 10 2 1229.6867 J3KNF5;O15078 J3KNF5 1366 1375 CEP290 Centrosomal protein of 290 kDa yes no 3 0.057416 17.026 By matching By MS/MS By matching 1 2 1 0.97396 1.0629 12.395 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1505 1.1782 NaN 1 0 Median 0.86015 0.95894 0 2 0 Median 1.1028 1.1983 NaN 1 0 Median 4363800 2454300 1909500 0 0 0 0 0 0 0 0 0 495150 212570 282580 3666400 2151600 1514900 202220 90197 112020 7355 1304 7638 37014;37015;37016;37017 37085 37085 1 ELVKEPAR TLVRKAGEQQETASRELVKEPARAGDRQPE QQETASRELVKEPARAGDRQPEWLEEQQGR R E L A R A 1 1 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 8 1 940.53418 A0A087WY61;Q14980 Q14980 936 943 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0072444 93.262 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.92245 0.87955 8.167 5 Median NaN NaN NaN 0 0 Median 1.0211 0.97984 NaN 1 0 Median 0.73545 0.87955 NaN 1 0 Median 0.95958 0.92637 NaN 1 0 Median 0.71351 0.80745 NaN 1 1 Median 0.92245 0.81941 NaN 1 0 Median 11820000 6568300 5252100 0 0 0 1047700 499900 547850 3727800 2079100 1648700 223030 112770 110260 5314600 3183800 2130800 1507200 692760 814480 7356 2905;77 7639 37018;37019;37020;37021;37022 37086;37087;37088 37087 3 ELVLDNSR RIHLELRNRTPSDVKELVLDNSRSNEGKLE RTPSDVKELVLDNSRSNEGKLEGLTDEFEE K E L S R S 0 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 P39687;H0YN26;H7BZ09 P39687 21 28 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0438 0.77538 18.44 5 Median 0.82899 0.77538 NaN 1 0 Median 1.2846 1.0864 NaN 1 0 Median 1.1036 1.0605 NaN 1 0 Median 0.98347 0.76328 1.7668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45458000 23584000 21874000 24896000 13918000 10978000 8898200 3900700 4997500 7936900 3990900 3946000 3727100 1775100 1951900 0 0 0 0 0 0 7357 2282 7640 37023;37024;37025;37026;37027 37089;37090;37091;37092;37093;37094;37095 37092 7 ELVNNLGEIYQK KKEMPNVFGKESKKKELVNNLGEIYQKIER KKKELVNNLGEIYQKIEREHQISPGDFPSL K E L Q K I 0 0 2 0 0 1 2 1 0 1 2 1 0 0 0 0 0 0 1 1 0 0 12 0 1418.7405 A0A024R571;Q9H4M9;C9JC03;C9J2Z4 A0A024R571 344 355 EHD1 EH domain-containing protein 1 yes no 2 0.00012009 90.108 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 1.2954 1.0991 41.411 8 Median 1.1509 1.0776 NaN 1 0 Median 1.1865 1.0246 NaN 1 0 Median 1.3589 1.3185 NaN 1 0 Median 1.2717 1.0991 0.12318 2 0 Median 3.7063 3.5394 NaN 1 0 Median 1.3506 1.1131 3.2227 2 0 Median 40875000 17066000 23810000 15736000 7262400 8473800 2219900 1000500 1219400 15396000 6181500 9214700 1508300 674710 833560 2942400 677600 2264800 3072500 1269000 1803400 7358 5 7641 37028;37029;37030;37031;37032;37033;37034;37035 37096;37097;37098;37099;37100 37098 5 ELVPESQAYMDLLAFER KRRKMADKVLPQRIRELVPESQAYMDLLAF VPESQAYMDLLAFERKLDQTIARKRMEIQE R E L E R K 2 1 0 1 0 1 3 0 0 0 3 0 1 1 1 1 0 0 1 1 0 0 17 0 2009.9768 J3KMX2;B9EGA3;Q92925;Q6STE5;C9JYI7;Q96GM5;F8VZ70;F8VUB0;F8VW95 J3KMX2 76 92 SMARCD2;SMARCD3;SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 no no 3 0.00013732 41.912 By MS/MS 1 0.69146 0.72627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69146 0.72627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2407700 1336500 1071300 0 0 0 0 0 0 2407700 1336500 1071300 0 0 0 0 0 0 0 0 0 7359 655;3659;3183 7642 37036 37101;37102 37102 2 ELVPQDLWAAK MSAQGDCEFLVQRARELVPQDLWAAKAWLI QRARELVPQDLWAAKAWLITARSLYPADFN R E L A K A 2 0 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 1 0 1 0 0 11 0 1268.6765 Q9NVR2;E5RHN1;E5RJN5 Q9NVR2 16 26 INTS10 Integrator complex subunit 10 yes no 2 0.0074795 42.287 By MS/MS By matching 1 1 1.0005 1.0698 44.114 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74094 0.78311 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3509 1.4614 NaN 1 0 Median NaN NaN NaN 0 0 Median 5450700 3044800 2405900 0 0 0 0 0 0 4903100 2854900 2048200 0 0 0 547560 189900 357650 0 0 0 7360 4139 7643 37037;37038 37103;37104 37104 2 ELVQNLLDGKIEAEDFTSR ASSGKQSTETAANVKELVQNLLDGKIEAED NLLDGKIEAEDFTSRLYRELNSSPQPYLVP K E L S R L 1 1 1 2 0 1 3 1 0 1 3 1 0 1 0 1 1 0 0 1 0 0 19 1 2176.1012 O00268 O00268 622 640 TAF4 Transcription initiation factor TFIID subunit 4 yes yes 3 2.571E-05 45.608 By MS/MS 1 1.0619 1.2081 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0619 1.2081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2417600 1225000 1192600 0 0 0 0 0 0 2417600 1225000 1192600 0 0 0 0 0 0 0 0 0 7361 1453 7644 37039 37105;37106 37106 2 ELVQTEIQER KERCNKLLQKVQKNKELVQTEIQERHSFTK VQKNKELVQTEIQERHSFTKEIIALKNFFQ K E L E R H 0 1 0 0 0 2 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1243.6408 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3576 3585 SYNE2 Nesprin-2 yes no 2 3.5536E-08 141.2 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2153 1.1412 35.814 4 Median NaN NaN NaN 0 0 Median 1.21 1.0099 NaN 1 1 Median 1.2206 1.2896 NaN 1 0 Median 1.7302 1.5067 NaN 1 0 Median 0.63106 0.66275 NaN 1 0 Median NaN NaN NaN 0 0 Median 20826000 9943200 10883000 0 0 0 6230600 2673700 3556900 9338400 4984900 4353500 2580400 893940 1686400 2676500 1390700 1285800 0 0 0 7362 3521 7645 37040;37041;37042;37043 37107;37108;37109;37110 37109 4 ELVQTVLAR WYVPLSDKEKKKITRELVQTVLARKPKMCS KKKITRELVQTVLARKPKMCSFLEWRDLKI R E L A R K 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 9 0 1027.6026 P56377;H7BZG6;H0Y673;F6SFB5;A6NH01 P56377 33 41 AP1S2 AP-1 complex subunit sigma-2 yes no 2 0.006571 54.157 By MS/MS By MS/MS By MS/MS 1 1 1 1.1852 0.98529 12.446 3 Median NaN NaN NaN 0 0 Median 1.1852 0.98529 NaN 1 0 Median 0.84979 0.86035 NaN 1 0 Median 1.3406 1.1031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4080400 2210500 1869900 0 0 0 1306100 639610 666530 2277600 1345700 931900 496640 225210 271430 0 0 0 0 0 0 7363 2510 7646 37044;37045;37046 37111;37112;37113 37111 3 ELVQVQTLMDNMTLER LLQRPGIEDVAVLKKELVQVQTLMDNMTLE LVQVQTLMDNMTLERERESEKLKDECKKLQ K E L E R E 0 1 1 1 0 2 2 0 0 0 3 0 2 0 0 0 2 0 0 2 0 0 16 0 1918.9492 Q15075 Q15075 229 244 EEA1 Early endosome antigen 1 yes yes 2 0.00012697 65.574 By MS/MS 1 1.0201 1.0093 NaN 1 Median 1.0201 1.0093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2753000 1460700 1292400 2753000 1460700 1292400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7364 2926 7647 37047 37114 37114 1 ELVSDANQHVK CRENVIMSQILPCIKELVSDANQHVKSALA PCIKELVSDANQHVKSALASVIMGLSPILG K E L V K S 1 0 1 1 0 1 1 0 1 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1238.6255 P30153;B3KQV6;C9J9C1 P30153 332 342 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2;3 6.8225E-05 118.5 By MS/MS By MS/MS By matching By matching By matching 3 4 2 3 1 1.1016 1.0009 14.617 13 Median 1.0751 1.0241 3.452 3 0 Plateau 1.0755 0.90829 4.8556 4 0 Median 1.1426 1.1508 2.2873 2 0 Median 1.2233 1.1038 17.568 3 0 Median NaN NaN NaN 0 0 Median 1.6307 1.391 NaN 1 0 Median 48209000 21863000 26346000 13092000 6137600 6954500 32399000 14498000 17900000 1751200 807220 944000 601160 267450 333710 0 0 0 365720 151980 213740 7365 2190 7648 37048;37049;37050;37051;37052;37053;37054;37055;37056;37057;37058;37059;37060 37115;37116;37117;37118;37119;37120;37121;37122;37123;37124 37120 10 ELVSLKQEQQAFK STLQTMESDIYTEVRELVSLKQEQQAFKEA VRELVSLKQEQQAFKEAADTERLALQALTE R E L F K E 1 0 0 0 0 3 2 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1546.8355 Q07065 Q07065 327 339 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 1.2822E-65 242.59 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.61227 0.57014 38.379 5 Median 0.61067 0.56738 0.68685 2 0 Median 0.90724 0.84922 NaN 1 0 Median 1.09 1.2254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59065 0.47482 NaN 1 0 Median 103840000 61547000 42297000 93574000 56702000 36872000 4300400 2107200 2193200 5592900 2532100 3060800 0 0 0 0 0 0 377070 205750 171320 7366 2730 7649 37061;37062;37063;37064;37065 37125;37126;37127;37128;37129 37125 5 ELVSSSSSGSDSDSEVDKK ______________________________ SSSSGSDSDSEVDKKLKRKKQVAPEKPVKK K E L K K L 0 0 0 3 0 0 2 1 0 0 1 2 0 0 0 8 0 0 0 2 0 0 19 1 1941.8651 P53999;D6RC37;D6R970 P53999 6 24 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes no 3 0.0040179 24.893 By MS/MS By MS/MS By matching 1 1 1 1.0702 1.052 10.731 3 Median 1.0471 1.052 NaN 1 0 Median 1.0702 0.94603 NaN 1 0 Median 1.1355 1.1725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4352200 2065200 2287000 2997800 1458700 1539200 1072800 474610 598190 281540 131900 149640 0 0 0 0 0 0 0 0 0 7367 2478 7650 37066;37067;37068 37130;37131;37132 37131 3 ELVTQQLPHLLK RQEGRKDSLSVNEFKELVTQQLPHLLKDVG EFKELVTQQLPHLLKDVGSLDEKMKSLDVN K E L L K D 0 0 0 0 0 2 1 0 1 0 4 1 0 0 1 0 1 0 0 1 0 0 12 0 1417.8293 Q99584 Q99584 40 51 S100A13 Protein S100-A13 yes yes 2;3 0.0025427 48.423 By MS/MS By MS/MS By MS/MS 2 2 2 0.99751 0.92517 12.436 6 Median 0.90821 0.82704 5.3681 2 0 Median 1.2328 1.0235 3.7972 2 0 Median 0.93726 0.90587 16.51 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38015000 19061000 18954000 20150000 10411000 9738800 7556400 3026100 4530400 10309000 5623700 4685300 0 0 0 0 0 0 0 0 0 7368 3755 7651 37069;37070;37071;37072;37073;37074 37133;37134;37135;37136;37137 37134 5 ELVVTQLGYDTR AIDTQNKPITSEKIKELVVTQLGYDTRVTI KIKELVVTQLGYDTRVTILGHVQRGGTPSA K E L T R V 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 2 0 0 12 0 1392.7249 Q01813;B1APP6;V9GY25 Q01813 290 301 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 3.0793E-06 137.98 By MS/MS By MS/MS By MS/MS 1 2 1 1.1305 1.1345 17.06 4 Median 1.1901 1.1259 NaN 1 0 Median 1.2477 1.0798 29.113 2 0 Median 1.0738 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22981000 10697000 12284000 13882000 6335000 7546700 7030600 3324900 3705700 2068500 1036900 1031600 0 0 0 0 0 0 0 0 0 7369 2692 7652 37075;37076;37077;37078 37138;37139;37140;37141 37139 4 ELVYPPDYNPEGK EAMNKRLGSLVDEFKELVYPPDYNPEGKVT FKELVYPPDYNPEGKVTKRKHDNEGSGSKR K E L G K V 0 0 1 1 0 0 2 1 0 0 1 1 0 0 3 0 0 0 2 1 0 0 13 0 1519.7195 P12956;B1AHC9 P12956 527 539 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 8.2378E-07 142.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.79724 0.71153 17.268 6 Median 0.77387 0.72335 NaN 1 0 Median 0.64218 0.5359 NaN 1 0 Median 0.71732 0.72432 27.323 2 0 Median 0.84492 0.71611 3.2346 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149910000 83156000 66749000 19158000 9538100 9620400 22782000 12191000 10591000 65402000 39198000 26204000 41882000 21820000 20063000 0 0 0 679630 409390 270240 7370 1985 7653 37079;37080;37081;37082;37083;37084;37085 37142;37143;37144;37145;37146;37147;37148;37149;37150;37151;37152;37153;37154;37155;37156;37157;37158;37159;37160;37161;37162;37163;37164;37165;37166;37167;37168;37169;37170 37142 29 ELWFSDDPNVTK SEDPELPYMRPPLSKELWFSDDPNVTKTLR LSKELWFSDDPNVTKTLRFKQWNGKERSIY K E L T K T 0 0 1 2 0 0 1 0 0 0 1 1 0 1 1 1 1 1 0 1 0 0 12 0 1449.6776 O95831 O95831 178 189 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.00081714 60.518 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.269 1.1506 15.111 5 Median 1.0977 1.0399 22.642 2 0 Median 1.3565 1.1506 NaN 1 0 Median 1.027 1.05 NaN 1 0 Median 1.524 1.3091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32396000 15499000 16898000 23504000 11799000 11705000 5129400 2129500 2999900 3257000 1368100 1888900 506260 202490 303770 0 0 0 0 0 0 7371 1797 7654 37086;37087;37088;37089;37090 37171;37172 37172 2 ELWLVIHGR TYYRLEEVAKRNSLKELWLVIHGRVYDVTR KRNSLKELWLVIHGRVYDVTRFLNEHPGGE K E L G R V 0 1 0 0 0 0 1 1 1 1 2 0 0 0 0 0 0 1 0 1 0 0 9 0 1121.6346 H3BUX2;A0A499FJ32;O43169;D6RFH4;J3QR91 H3BUX2 36 44 CYB5B Cytochrome b5 type B yes no 2 0.0029042 68.787 By MS/MS By matching By matching 2 1 1 1.0851 0.98539 21.756 4 Median 0.8472 0.8182 19.667 2 0 Median 1.2384 1.0327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5142 1.1927 NaN 1 0 Median 9089100 3793200 5295900 8121200 3338400 4782800 817420 400460 416960 0 0 0 0 0 0 0 0 0 150450 54354 96093 7372 476 7655 37091;37092;37093;37094 37173 37173 1 ELYADFIAAQIK IQVSAQARQHKLYNKELYADFIAAQIKTLS YNKELYADFIAAQIKTLSFLAYIIRIYQEL K E L I K T 3 0 0 1 0 1 1 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 12 0 1380.7289 F2Z2U4;Q9Y4A5 F2Z2U4 275 286 TRRAP Transformation/transcription domain-associated protein yes no 2 0.011268 36.693 By MS/MS By matching 2 1 1.0497 1.0577 16.126 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89786 0.97799 21.889 2 0 Median 1.141 1.0577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3256500 1698400 1558100 0 0 0 0 0 0 3085400 1619900 1465400 171160 78487 92671 0 0 0 0 0 0 7373 991 7656 37095;37096;37097 37174;37175 37174 2 ELYDKGGEQAIK QISQAYEVLSDAKKRELYDKGGEQAIKEGG KKRELYDKGGEQAIKEGGAGGGFGSPMDIF R E L I K E 1 0 0 1 0 1 2 2 0 1 1 2 0 0 0 0 0 0 1 0 0 0 12 1 1349.6827 P31689 P31689 62 73 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.00019161 71.085 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.0852 0.96716 28.17 5 Median 0.93689 0.90277 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5917 1.682 NaN 1 0 Median 1.2746 1.1384 29.099 2 0 Median NaN NaN NaN 0 0 Median 1.0852 0.96716 NaN 1 0 Median 12775000 5999000 6775600 2811800 1402800 1408900 0 0 0 1406100 625140 781010 6419000 2917400 3501600 0 0 0 2137700 1053600 1084100 7374 2204 7657 37098;37099;37100;37101;37102 37176;37177;37178;37179;37180 37178 5 ELYGQVLYR LKTIESANQQTDKLKELYGQVLYRLERYDE QTDKLKELYGQVLYRLERYDECLAVYRDLV K E L Y R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 2 1 0 0 9 0 1139.5975 O76094;D6RDY6;R4GNC1 O76094 113 121 SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0014144 81.784 By MS/MS By matching By MS/MS 2 2 1 1.1282 1.0676 42.285 5 Median 0.69965 0.68491 62.779 2 0 Median 1.0548 0.91303 31.619 2 0 Median 1.1743 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23891000 10966000 12924000 9503800 4400900 5103000 5225300 2286000 2939300 9161500 4279300 4882200 0 0 0 0 0 0 0 0 0 7375 1721 7658 37103;37104;37105;37106;37107 37181;37182 37181 2 ELYGVGVEK PSGAGKKTRIMCILRELYGVGVEKLRIEHQ IMCILRELYGVGVEKLRIEHQTITTPSKKK R E L E K L 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 992.51786 P40938 P40938 58 66 RFC3 Replication factor C subunit 3 yes yes 2 0.0091518 49.418 By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 0.96914 0.96931 46.18 7 Median 0.79049 0.73817 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0056 1.0115 1.8558 2 0 Median 0.84302 0.72591 40.893 2 0 Median NaN NaN NaN 0 0 Median 0.67865 0.60346 91.494 2 0 Median 17769000 9061900 8707100 5459000 2945600 2513400 0 0 0 8907400 4438000 4469500 2162200 1001800 1160400 0 0 0 1240300 676570 563720 7376 2294 7659 37108;37109;37110;37111;37112;37113;37114 37183;37184;37185;37186;37187 37187 5 ELYIQHAK KTVKENWKNLSDSEKELYIQHAKEDETRYH NLSDSEKELYIQHAKEDETRYHNEMKSWEE K E L A K E 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1000.5342 Q00059 Q00059 198 205 TFAM Transcription factor A, mitochondrial yes yes 2 0.010533 58.687 By MS/MS By matching By MS/MS 1 1 2 1.1334 0.99859 4.6366 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0543 0.99057 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98835 1.0067 NaN 1 0 Median 1.2667 1.0377 6.9596 2 0 Median 14358000 6690300 7667700 0 0 0 0 0 0 8007400 3809100 4198300 0 0 0 2132600 1073400 1059200 4217900 1807800 2410100 7377 2673 7660 37115;37116;37117;37118 37188;37189;37190;37191 37191 4 ELYIQHAKEDETR KTVKENWKNLSDSEKELYIQHAKEDETRYH EKELYIQHAKEDETRYHNEMKSWEEQMIEV K E L T R Y 1 1 0 1 0 1 3 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 13 1 1630.7951 Q00059 Q00059 198 210 TFAM Transcription factor A, mitochondrial yes yes 3;4 0.0058539 30.998 By matching By MS/MS 1 2 1.2265 1.1926 26.316 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.25 1.2823 NaN 1 0 Median 0.97167 0.86013 17.939 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3656600 1683400 1973200 0 0 0 0 0 0 1557500 651320 906140 2099100 1032100 1067100 0 0 0 0 0 0 7378 2673 7661 37119;37120;37121 37192;37193 37192 2 ELYLEDSPLELK IVDLIHDIQIVSTTRELYLEDSPLELKIQA TTRELYLEDSPLELKIQALDSEGNTFSTLA R E L L K I 0 0 0 1 0 0 3 0 0 0 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1447.7446 Q8TEM1 Q8TEM1 127 138 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 3.2154E-06 110.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 3 1.1072 0.98472 19.777 9 Median 1.1551 1.1329 8.4504 2 2 Median 1.1093 0.98472 NaN 1 0 Median 0.77278 0.83824 3.4947 2 0 Median 1.3905 1.2645 NaN 1 0 Median 0.67763 0.71761 NaN 1 1 Median 1.0509 0.90013 20.924 2 0 Median 64857000 34135000 30722000 10085000 4683500 5401200 13005000 6374000 6630900 37719000 20886000 16833000 825190 317080 508110 2108400 1261800 846610 1115100 612130 502960 7379 3477 7662 37122;37123;37124;37125;37126;37127;37128;37129;37130;37131 37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205;37206 37198 13 ELYLFDVLR PSPEKAEEESERLLRELYLFDVLRADRTTA SERLLRELYLFDVLRADRTTAAHGLELRVP R E L L R A 0 1 0 1 0 0 1 0 0 0 3 0 0 1 0 0 0 0 1 1 0 0 9 0 1166.6336 P08243 P08243 396 404 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2 0.035824 34.808 By MS/MS By matching 2 1 1.5322 1.5293 33.35 3 Median 1.564 1.5351 0.53376 2 0 Median 0.98996 0.86155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8521400 3410700 5110700 7185300 2739400 4446000 1336100 671300 664790 0 0 0 0 0 0 0 0 0 0 0 0 7380 1901 7663 37132;37133;37134 37207 37207 1 ELYPVEFR IPITLFMDLQAVLPRELYPVEFRNLLKWYA LQAVLPRELYPVEFRNLLKWYAKEFKDPLL R E L F R N 0 1 0 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 8 0 1051.5338 Q5BJF2;J3KT68 Q5BJF2 37 44 TMEM97 Transmembrane protein 97 yes no 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2098 1.0029 15.209 5 Median 0.84685 0.80381 NaN 1 0 Median 1.2814 1.0492 6.3857 2 0 Median 0.95244 0.96457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5337 1.2057 NaN 1 0 Median 65736000 33610000 32126000 43176000 22597000 20579000 9824200 4296400 5527800 12384000 6580100 5803800 0 0 0 0 0 0 352500 136810 215690 7381 3041 7664 37135;37136;37137;37138;37139 37208;37209;37210;37211;37212;37213;37214 37213 7 ELYQLSK DDKDWKSATNLPQLKELYQLSKEKADFTVV ATNLPQLKELYQLSKEKADFTVVAGDEGSS K E L S K E 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 879.47018 P49916 P49916 827 833 LIG3 DNA ligase 3 yes yes 2 0.066365 46.835 By MS/MS 1 0.89464 0.96716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89464 0.96716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2527700 1390000 1137700 0 0 0 0 0 0 2527700 1390000 1137700 0 0 0 0 0 0 0 0 0 7382 2406 7665 37140 37215 37215 1 ELYQQLQR LVPAAELLESRVIDRELYQQLQRGERSVRD ESRVIDRELYQQLQRGERSVRDVAEVDTVR R E L Q R G 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1076.5615 Q15149;H0YDN1 Q15149 3132 3139 PLEC Plectin yes no 2 0.0040524 83.801 By matching By matching By matching By MS/MS By MS/MS 1 2 1 2 1 1.0961 1.0475 20.478 7 Median 1.1657 1.0585 NaN 1 0 Median 1.3312 1.1082 28.845 2 0 Median 1.0828 1.0475 NaN 1 0 Median 1.2144 1.0261 27.559 2 1 Median NaN NaN NaN 0 0 Median 0.92845 0.77321 NaN 1 0 Median 33596000 14997000 18600000 15783000 7158500 8624800 8369900 3812800 4557100 4957800 2077800 2880000 2604500 1025100 1579400 0 0 0 1880900 922340 958570 7383 2933 7666 37141;37142;37143;37144;37145;37146;37147 37216;37217 37217 2 ELYSQLGEK QKALEPTGQSGEAVKELYSQLGEKLEQLDH SGEAVKELYSQLGEKLEQLDHRKPSPAQAA K E L E K L 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1065.5342 Q8WX92 Q8WX92 539 547 NELFB Negative elongation factor B yes yes 2 0.0025104 71.501 By MS/MS By matching By matching 1 1 1 1.0578 1.1762 22.616 3 Plateau NaN NaN NaN 0 0 Median 1.6038 1.3762 NaN 1 0 Median 1.0121 1.0052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0578 0.88732 NaN 1 0 Median 7057500 3043900 4013600 0 0 0 3472900 1345500 2127400 2839900 1337300 1502600 0 0 0 0 0 0 744760 361120 383650 7384 3514 7667 37148;37149;37150 37218;37219 37218 2 EMAAMCLGLAHSLSR IRSQMDGLIPGVEPREMAAMCLGLAHSLSR EMAAMCLGLAHSLSRYRLKFSADKVDTMIV R E M S R Y 3 1 0 0 1 0 1 1 1 0 3 0 2 0 0 2 0 0 0 0 0 0 15 0 1645.7739 Q9Y2X3;H7BZ72 Q9Y2X3 134 148 NOP58 Nucleolar protein 58 yes no 3 0.00034069 43.408 By MS/MS By matching 2 1 0.95782 0.96135 9.1326 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98168 0.98602 3.583 2 0 Median 0.95782 0.847 NaN 1 0 Median 11874000 5922400 5951900 0 0 0 0 0 0 0 0 0 0 0 0 11753000 5872700 5880500 121080 49688 71391 7385 4396 7668;7669 37151;37152;37153 37220;37221;37222 37220 1959;1960 3 EMAEAFAGEIPK FMGLALHCIASVGSREMAEAFAGEIPKVLV GSREMAEAFAGEIPKVLVAGDTMDSVKQSA R E M P K V 3 0 0 0 0 0 3 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 12 0 1291.6118 O94973;A0A0G2JS82;A0A0G2JQM1;E9PR62;A0A0G2JQA4;A0A0G2JRF9;H0YDE9;H0YEG0;A0A0G2JQT9;A0A0G2JS17;E9PQP4 O94973 142 153 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.0015234 51.927 By MS/MS By matching By MS/MS 1 1 1 0.88701 0.966 7.4503 3 Median 0.87997 0.85432 NaN 1 0 Median 1.0781 0.966 NaN 1 0 Median 0.88701 0.97726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12635000 7005800 5629000 7531100 4307100 3224000 1042100 514140 527990 4061500 2184600 1877000 0 0 0 0 0 0 0 0 0 7386 1741 7670 37154;37155;37156 37223;37224 37224 2 EMAEIRDQMQQQLNDYEQLLDVK KEKDNSRRMLTDKEREMAEIRDQMQQQLND MQQQLNDYEQLLDVKLALDMEISAYRKLLE R E M V K L 1 1 1 3 0 5 3 0 0 1 3 1 2 0 0 0 0 0 1 1 0 0 23 1 2836.3371 P20700;E9PBF6 P20700 345 367 LMNB1 Lamin-B1 yes no 3 1.311E-11 54.672 By MS/MS 1 0.81667 0.89815 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81667 0.89815 NaN 1 0 Median NaN NaN NaN 0 0 Median 7047800 3266700 3781100 0 0 0 0 0 0 0 0 0 0 0 0 7047800 3266700 3781100 0 0 0 7387 2084 7671 37157 37225 37225 842 1 EMAGDNKLLGQFTLIGIPPAPR DGQTQVEIKVCQGEREMAGDNKLLGQFTLI LLGQFTLIGIPPAPRGVPQIEVTFDIDANG R E M P R G 2 1 1 1 0 1 1 3 0 2 3 1 1 1 3 0 1 0 0 0 0 0 22 1 2337.2515 P38646;H0Y8S0 P38646 492 513 HSPA9 Stress-70 protein, mitochondrial yes no 3 7.4936E-07 42.309 By MS/MS 2 0.71789 0.7257 2.8929 2 Median 0.71789 0.7257 2.8929 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4636400 2549500 2086900 4636400 2549500 2086900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7388 2277 7672 37158;37159 37226;37227;37228 37227 3 EMAIPVLEAR QSVRQALHSGQNQLKEMAIPVLEARACAAA QNQLKEMAIPVLEARACAAAGQSGLMALYE K E M A R A 2 1 0 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 10 0 1127.6009 P54886 P54886 150 159 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00033784 110.87 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 3 2 1 2 0.99486 0.90767 8.441 11 Median 0.84083 0.80365 9.951 2 0 Median 1.1455 0.99086 NaN 1 0 Median 0.98763 0.98758 5.5324 3 0 Plateau 1.0524 0.90683 6.269 2 0 Median 0.85204 0.90658 NaN 1 0 Median 1.1618 0.95502 7.192 2 0 Median 119850000 55596000 64255000 21589000 11208000 10381000 29963000 13845000 16118000 59024000 26384000 32640000 6147900 2707600 3440400 1889800 900650 989120 1237500 550370 687160 7389 2488 7673;7674 37160;37161;37162;37163;37164;37165;37166;37167;37168;37169;37170 37229;37230;37231;37232;37233;37234;37235;37236;37237;37238;37239 37236 1167 11 EMALLATSLPEGIMVK FQPPEAKKFFSTVRKEMALLATSLPEGIMV MALLATSLPEGIMVKTFEDRMDLFSALIKG K E M V K T 2 0 0 0 0 0 2 1 0 1 3 1 2 0 1 1 1 0 0 1 0 0 16 0 1701.9045 Q9C0C9;K7ES11 Q9C0C9 961 976 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.0056562 32.606 By MS/MS By matching 1 1 1.1398 1.0434 2.5755 2 Median 1.0844 1.0245 NaN 1 0 Median 1.198 1.0625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6889000 3078800 3810200 2179700 1012400 1167300 4709300 2066400 2642900 0 0 0 0 0 0 0 0 0 0 0 0 7390 3904 7675 37171;37172 37240 37240 1 EMAPVPGTTTTTTSVK EEGGPGPVSTPDNRKEMAPVPGTTTTTTSV MAPVPGTTTTTTSVKKEELVPSEEDFQGIT K E M V K K 1 0 0 0 0 0 1 1 0 0 0 1 1 0 2 1 6 0 0 2 0 0 16 0 1619.8076 O75150;H3BP71 O75150 563 578 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 2.9413E-05 82.543 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.83902 0.80468 9.3801 4 Median 0.8784 0.87137 NaN 1 0 Median 0.8014 0.69777 NaN 1 0 Median 0.76664 0.82015 NaN 1 0 Median 0.91454 0.7895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18564000 10157000 8407000 2515600 1582700 932860 2928300 1341100 1587300 8447100 4758100 3689000 4673400 2475500 2197900 0 0 0 0 0 0 7391 1648 7676 37173;37174;37175;37176 37241;37242;37243;37244;37245 37242 5 EMASLSAAAITVPPSVPSR GEVAKLTKELEDAKKEMASLSAAAITVPPS LSAAAITVPPSVPSRAPVPPAPPLPGDSGT K E M S R A 4 1 0 0 0 0 1 0 0 1 1 0 1 0 3 4 1 0 0 2 0 0 19 0 1882.9822 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 561 579 DIAPH1 Protein diaphanous homolog 1 yes no 2 1.9617E-09 88.087 By MS/MS By matching By matching By matching 1 1 1 1 0.65828 0.66549 21.715 4 Median 0.63899 0.60165 NaN 1 0 Median 0.55271 0.48713 NaN 1 0 Median 0.67816 0.7361 NaN 1 0 Median 0.91033 0.78868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10041000 5819900 4220800 8238100 4828200 3409900 228600 164440 64161 1445600 764210 681410 128310 63031 65278 0 0 0 0 0 0 7392 274 7677 37177;37178;37179;37180 37246;37247 37246 2 EMDDPSVGPK PRPRGPPPPPGDENREMDDPSVGPKIPQAL GDENREMDDPSVGPKIPQALEKILQLKESR R E M P K I 0 0 0 2 0 0 1 1 0 0 0 1 1 0 2 1 0 0 0 1 0 0 10 0 1073.4699 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 259 268 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.0040958 54.416 By MS/MS By MS/MS 1 1 0.91338 0.77535 12.701 2 Median NaN NaN NaN 0 0 Median 0.98468 0.84821 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84724 0.70875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733300 2463000 2270300 0 0 0 3842500 1971900 1870600 0 0 0 890820 491170 399650 0 0 0 0 0 0 7393 2817 7678 37181;37182 37248;37249;37250 37248 3 EMDEAATAEER EKDKDDDEVFEKKQKEMDEAATAEERGRLK KKQKEMDEAATAEERGRLKEELEEARDIAR K E M E R G 3 1 0 1 0 0 4 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 11 0 1250.5085 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6 E7EX73 704 714 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00016143 91.584 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0758 1.0133 11.139 5 Median 1.0758 1.0738 NaN 1 0 Median 1.0441 0.88019 9.8827 2 0 Median 0.91173 1.0133 NaN 1 0 Median 1.2119 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12127000 5814300 6313100 2235000 1112300 1122700 7880500 3766500 4114000 1285000 615870 669180 726860 319590 407270 0 0 0 0 0 0 7394 894 7679 37183;37184;37185;37186;37187 37251;37252;37253;37254;37255;37256;37257;37258 37256 8 EMDEQIR ERTEERAELAESRCREMDEQIRLMDQNLKC ELAESRCREMDEQIRLMDQNLKCLSAAEEK R E M I R L 0 1 0 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 7 0 919.40693 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6 A0A087WWU8 156 162 TPM3 no no 2 0.017766 64.776 By MS/MS By matching 1 1 1.2116 1.0955 5.2398 2 Median 1.1039 1.0556 NaN 1 0 Median 1.3299 1.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4059300 1800100 2259100 3523900 1582200 1941700 535370 217940 317430 0 0 0 0 0 0 0 0 0 0 0 0 7395 63;1303 7680 37188;37189 37259 37259 1 EMDNFLAQMEAK SLKAAIQSRQKDRQKEMDNFLAQMEAKYCK RQKEMDNFLAQMEAKYCKSSKGGGKKSALK K E M A K Y 2 0 1 1 0 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 12 0 1425.6268 Q8WXX5 Q8WXX5 230 241 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.00059185 72.607 By matching By MS/MS 1 1 0.96751 0.87302 7.2795 2 Median NaN NaN NaN 0 0 Median 0.97898 0.82922 NaN 1 0 Median 0.95618 0.91914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7707400 3953000 3754400 0 0 0 316990 179400 137590 7390400 3773600 3616800 0 0 0 0 0 0 0 0 0 7396 3522 7681 37190;37191 37260;37261 37261 2 EMDPVTQLYTMTSTLEYK VLHPLEGAVVIIFKKEMDPVTQLYTMTSTL PVTQLYTMTSTLEYKTTKADIQMPFTCSVT K E M Y K T 0 0 0 1 0 1 2 0 0 0 2 1 2 0 1 1 4 0 2 1 0 0 18 0 2148.9959 Q13740;F5GXJ9;H7C543 Q13740 191 208 ALCAM CD166 antigen yes no 2 5.3816E-06 69.714 By MS/MS 1 0.95286 0.86009 NaN 1 Median NaN NaN NaN 0 0 Median 0.95286 0.86009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 758080 413610 344470 0 0 0 758080 413610 344470 0 0 0 0 0 0 0 0 0 0 0 0 7397 2836 7682 37192 37262 37262 1 EMDRETLIDVAR KEKALQFLEEVKVSREMDRETLIDVARTSL VSREMDRETLIDVARTSLRTKVHAELADVL R E M A R T 1 2 0 2 0 0 2 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 12 1 1446.7137 P40227 P40227 142 153 CCT6A T-complex protein 1 subunit zeta yes yes 2;3 3.2271E-05 129.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 2 2 1 1 1.1623 1.1339 25.863 13 Median 1.1503 1.1333 7.0043 3 0 Plateau 1.1517 1.0423 7.0503 4 0 Median 1.3757 1.4858 1.1156 2 1 Median 1.3228 1.2171 7.2324 2 0 Median 1.7291 1.8496 NaN 1 0 Median 0.71463 0.63181 NaN 1 0 Median 296690000 135450000 161230000 224010000 103210000 120800000 43556000 19918000 23638000 22124000 9117600 13007000 3391300 1581500 1809800 2681000 1119000 1562000 926050 505360 420690 7398 2285 7683;7684 37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205 37263;37264;37265;37266;37267;37268;37269;37270;37271;37272;37273;37274;37275 37268 1041 13 EMDYETEVEMEK QEIRNPIHAIGLLIREMDYETEVEMEKGFN LIREMDYETEVEMEKGFNPAQPLNIRMNLT R E M E K G 0 0 0 1 0 0 5 0 0 0 0 1 2 0 0 0 1 0 1 1 0 0 12 0 1531.6058 Q12769;G3V198;E9PR16 Q12769 678 689 NUP160 Nuclear pore complex protein Nup160 yes no 2 3.1534E-06 110.38 By MS/MS By MS/MS 1 1 1.1265 1.0746 10.964 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9322 0.99448 NaN 1 0 Median 1.3614 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19311000 9268900 10042000 0 0 0 0 0 0 16875000 8218300 8657100 2435600 1050700 1384900 0 0 0 0 0 0 7399 2756 7685 37206;37207 37276;37277;37278;37279 37277 4 EMEAELEDER EQSEEKKKQLVRQVREMEAELEDERKQRSM VRQVREMEAELEDERKQRSMAVAARKKLEM R E M E R K 1 1 0 1 0 0 5 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1249.5132 P35579 P35579 1593 1602 MYH9 Myosin-9 yes yes 2 4.3998E-05 138.4 By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 0.89676 0.8799 18.523 8 Median 1.0103 0.98022 7.2284 2 0 Median 1.0088 0.85571 22.465 3 0 Median 0.82284 0.91461 6.8422 2 0 Median 0.77791 0.68465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59429000 26583000 32845000 25106000 10310000 14795000 29447000 13833000 15615000 4187300 2087100 2100200 688350 353550 334800 0 0 0 0 0 0 7400 2244 7686;7687 37208;37209;37210;37211;37212;37213;37214;37215 37280;37281;37282;37283;37284;37285;37286;37287 37284 985 8 EMEAELEDERK EQSEEKKKQLVRQVREMEAELEDERKQRSM RQVREMEAELEDERKQRSMAVAARKKLEMD R E M R K Q 1 1 0 1 0 0 5 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1377.6082 P35579 P35579 1593 1603 MYH9 Myosin-9 yes yes 2;3 0.00017567 120.12 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1 1.0685 1.0711 12.925 10 Median 1.0678 1.0736 2.3342 2 0 Median 1.0685 1.0041 4.6014 4 0 Median 0.81686 0.97342 17.798 2 0 Median 1.3422 1.2958 NaN 1 0 Median 1.1977 1.3306 NaN 1 0 Median NaN NaN NaN 0 0 Median 60030000 28230000 31800000 19721000 8777500 10944000 33627000 16141000 17486000 4872100 2535800 2336300 672430 314980 357460 1137600 461080 676500 0 0 0 7401 2244 7688 37216;37217;37218;37219;37220;37221;37222;37223;37224;37225 37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300 37290 13 EMEAELEDERKQR EQSEEKKKQLVRQVREMEAELEDERKQRSM VREMEAELEDERKQRSMAVAARKKLEMDLK R E M Q R S 1 2 0 1 0 1 5 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 13 2 1661.7679 P35579 P35579 1593 1605 MYH9 Myosin-9 yes yes 3;4 1.7535E-05 86.911 By MS/MS 2 1.2171 1.2418 1.0881 2 Median 1.2171 1.2418 1.0881 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17239000 7781900 9457400 17239000 7781900 9457400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7402 2244 7689 37226;37227 37301;37302;37303;37304 37304 4 EMEAQQAALDPALK NSDDAIRSILQQARREMEAQQAALDPALKQ REMEAQQAALDPALKQAPLSQSDITILTPK R E M L K Q 4 0 0 1 0 2 2 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 14 0 1513.7446 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 671 684 no no 2 1.0543E-05 90.05 By MS/MS By MS/MS 1 1 0.73071 0.73048 17.152 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74713 0.82467 NaN 1 0 Median 0.71465 0.64704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13026000 7378100 5648100 0 0 0 0 0 0 11026000 6237100 4789300 1999800 1141000 858810 0 0 0 0 0 0 7403 388 7690 37228;37229 37305;37306;37307;37308 37305 4 EMEENFAVEAANYQDTIGR DALKGTNESLERQMREMEENFAVEAANYQD NFAVEAANYQDTIGRLQDEIQNMKEEMARH R E M G R L 3 1 2 1 0 1 4 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 19 0 2185.9586 P08670;B0YJC4;B0YJC5 P08670 346 364 VIM Vimentin yes no 2;3 8.9208E-19 155.08 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 7 3 8 3 1.0431 1.0505 19.77 25 Median 0.97852 0.96711 18.869 3 0 Median 1.4116 1.2312 NaN 1 0 Median 1.0383 1.0468 15.469 7 0 Median 1.0522 0.92171 19.791 3 0 Median 1.111 1.1343 9.9464 8 0 Median 0.96017 0.82489 16.949 3 0 Plateau 149800000 68358000 81444000 21731000 10714000 11017000 894370 321370 573010 49586000 22648000 26938000 1111800 576260 535530 75262000 33521000 41741000 1217400 577010 640410 7404 1907 7691;7692 37230;37231;37232;37233;37234;37235;37236;37237;37238;37239;37240;37241;37242;37243;37244;37245;37246;37247;37248;37249;37250;37251;37252;37253;37254 37309;37310;37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321;37322;37323;37324;37325;37326;37327;37328;37329;37330;37331;37332;37333;37334;37335;37336;37337 37332 679 29 EMEEQMR EERRRREEEMMIRQREMEEQMRRQREESYS EEMMIRQREMEEQMRRQREESYSRMGYMDP R E M M R R 0 1 0 0 0 1 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 7 0 951.379 P23246;H0Y9K7;H0Y9U2 P23246 584 590 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.00617 94.163 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.1299 1.0266 20.952 6 Median NaN NaN NaN 0 0 Median 1.1531 0.99917 NaN 1 1 Median 0.92451 0.98571 NaN 1 0 Median 1.224 1.0548 NaN 1 1 Median 1.2853 1.3343 18.963 2 0 Median 0.99079 0.8145 NaN 1 1 Median 17577000 8392300 9185000 0 0 0 3368600 1558100 1810500 5772900 2912500 2860400 3261000 1419400 1841600 4592300 2208200 2384100 582540 294190 288350 7405 2107 7693 37255;37256;37257;37258;37259;37260;37261 37338;37339;37340;37341;37342;37343;37344 37338 7 EMEPLGWIHTQPNESPQLSPQDVTTHAK TVHLPGQLPQHEYLKEMEPLGWIHTQPNES ESPQLSPQDVTTHAKIMADNPSWDGEKTII K E M A K I 1 0 1 1 0 3 3 1 2 1 2 1 1 0 4 2 3 1 0 1 0 0 28 0 3169.5139 Q6P2Q9 Q6P2Q9 2171 2198 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 3.5719E-09 45.611 By matching By MS/MS 1 1 0.51793 0.53581 11.257 2 Median 0.60362 0.58021 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4444 0.49482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11599000 7934600 3664300 5857200 3704000 2153300 0 0 0 5741700 4230700 1511000 0 0 0 0 0 0 0 0 0 7406 3157 7694 37262;37263 37345 37345 1 EMESNWVSLVSK WQRKNMQLTAGSKLREMESNWVSLVSKNYE KLREMESNWVSLVSKNYEIERTIVQLENEI R E M S K N 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 3 0 1 0 2 0 0 12 0 1407.6704 O75934 O75934 180 191 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.0018137 50.292 By matching By MS/MS By MS/MS 1 2 1 1.0671 0.95765 12.438 4 Median NaN NaN NaN 0 0 Median 1.1705 1.0055 NaN 1 0 Median 1.1017 1.0371 18.172 2 1 Median NaN NaN NaN 0 0 Median 0.88099 0.90095 NaN 1 0 Median NaN NaN NaN 0 0 Median 25596000 12760000 12836000 0 0 0 331330 150110 181220 22666000 11325000 11341000 0 0 0 2598900 1285300 1313500 0 0 0 7407 1707 7695;7696 37264;37265;37266;37267 37346;37347;37348;37349;37350 37348 563 5 EMESRDEEVEEAR RLEMEMERMRQTHSKEMESRDEEVEEARQS SKEMESRDEEVEEARQSCQKKLKQMEVQLE K E M A R Q 1 2 0 1 0 0 6 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 13 1 1607.6733 Q92614;A0A0D9SFK2 Q92614 1589 1601 MYO18A Unconventional myosin-XVIIIa yes no 3 0.048642 26.541 By MS/MS By MS/MS 1 1 0.78186 0.90875 14.743 2 Median 0.94314 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64817 0.81879 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1837100 1110800 726240 704500 386260 318240 0 0 0 1132500 724540 408010 0 0 0 0 0 0 0 0 0 7408 267 7697 37268;37269 37351;37352 37352 2 EMFEDTVEER ______________________________ ______________________________ K E M E R V 0 1 0 1 0 0 4 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1283.534 Q16576;E9PC52 Q16576 5 14 RBBP7 Histone-binding protein RBBP7 yes no 2 1.2177E-07 167.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 4 1.1684 0.97647 14.5 12 Median NaN NaN NaN 0 0 Median 1.3545 1.1569 7.9167 2 0 Median 0.86749 0.84773 3.7767 2 0 Median 1.1589 0.99882 13.41 3 0 Median 0.83327 0.87857 NaN 1 0 Median 1.2246 0.97702 16.183 4 0 Median 162550000 79206000 83345000 0 0 0 11374000 4630800 6743500 95356000 48615000 46741000 52453000 24399000 28054000 552690 242700 309990 2815200 1318200 1497000 7409 2990 7698;7699 37270;37271;37272;37273;37274;37275;37276;37277;37278;37279;37280;37281 37353;37354;37355;37356;37357;37358;37359;37360 37355 1641 8 EMFEVTGLHDVDQGWMR TQISPVWLQLKRRGREMFEVTGLHDVDQGW FEVTGLHDVDQGWMRAVRKHAKGLHIVPRL R E M M R A 0 1 0 2 0 1 2 2 1 0 1 0 2 1 0 0 1 1 0 2 0 0 17 0 2048.9084 Q9BWS9 Q9BWS9 119 135 CHID1 Chitinase domain-containing protein 1 yes yes 3 6.7862E-06 58.671 By matching By MS/MS By matching 1 1 1 1.0763 1.121 11.436 3 Plateau NaN NaN NaN 0 0 Median 1.2824 1.1051 NaN 1 0 Median 1.0323 1.121 NaN 1 0 Median 1.0763 0.91337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8374000 3894400 4479700 0 0 0 1025200 471350 553890 7213900 3358500 3855400 134890 64461 70427 0 0 0 0 0 0 7410 3874 7700 37282;37283;37284 37361;37362 37362 2 EMFGLYGQTTGK NKIDRPEAISEERLREMFGLYGQTTGKGSI RLREMFGLYGQTTGKGSISLKELNARPLEV R E M G K G 0 0 0 0 0 1 1 3 0 0 1 1 1 1 0 0 2 0 1 0 0 0 12 0 1330.6227 Q9Y6B6;D6RD69;Q9H029;D6R9R5 Q9Y6B6 149 160 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b yes no 2 3.7563E-05 96.015 By MS/MS By MS/MS 1 1 1.991 1.9421 73.654 2 Median 1.2434 1.1537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1882 3.2693 NaN 1 0 Median NaN NaN NaN 0 0 Median 24044000 10582000 13462000 21076000 9687200 11389000 0 0 0 0 0 0 0 0 0 2968000 894650 2073400 0 0 0 7411 4487 7701 37285;37286 37363;37364 37363 2 EMFLDYR IFDMLLTFTDFLAFKEMFLDYRAEKEGRGL FTDFLAFKEMFLDYRAEKEGRGLDLSSGLV K E M Y R A 0 1 0 1 0 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 7 0 972.4375 H3BU49;H3BM52;Q9Y2Y0 H3BU49 83 89 ARL2BP ADP-ribosylation factor-like protein 2-binding protein yes no 2 0.030804 49.59 By MS/MS 1 1.0317 1.0273 NaN 1 Median 1.0317 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4029700 1997700 2031900 4029700 1997700 2031900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7412 1210 7702 37287 37365 37365 1 EMFNLFQVTDNR MTENEVGKIALHIEKEMFNLFQVTDNRYKS IEKEMFNLFQVTDNRYKSKYRSIMFNLKDP K E M N R Y 0 1 2 1 0 1 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 12 0 1512.7031 Q9BTC0 Q9BTC0 709 720 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00016495 86.898 By matching By MS/MS By matching 1 2 1 0.85229 0.92071 10.255 4 Median NaN NaN NaN 0 0 Median 0.8745 0.77585 NaN 1 0 Median 0.82662 0.92071 1.496 2 0 Median 1.1347 0.98582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4799200 2505700 2293500 0 0 0 327490 133010 194480 4380700 2331000 2049800 90933 41702 49230 0 0 0 0 0 0 7413 3824 7703 37288;37289;37290;37291 37366;37367;37368 37368 3 EMFNPMYALFR DAGGLLREWYMIISREMFNPMYALFRTSPG IISREMFNPMYALFRTSPGDRVTYTINPSS R E M F R T 1 1 1 0 0 0 1 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 11 0 1417.6523 Q7Z6Z7;H0Y659 Q7Z6Z7 4072 4082 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.00014351 93.429 By MS/MS By matching By matching By matching 7 3 3 1 0.82923 0.81516 18.616 14 Median 0.80028 0.81028 10.686 7 0 Median 1.2094 1.0616 20.515 3 0 Median 0.73542 0.81848 15.53 3 0 Median NaN NaN NaN 0 0 Median 1.1116 1.1879 NaN 1 0 Median NaN NaN NaN 0 0 Median 31508000 16187000 15321000 28389000 14638000 13751000 2083800 1016800 1067000 446610 236990 209620 0 0 0 588760 294860 293900 0 0 0 7414 3253 7704;7705 37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305 37369;37370;37371;37372;37373;37374;37375;37376 37374 1695 8 EMFNYAR SIVDKYIGESARLIREMFNYARDHQPCIIF GESARLIREMFNYARDHQPCIIFMDEIDAI R E M A R D 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 7 0 929.40654 A0A087X2I1;P62333;H0YJC0;H0YJS8;H0YJX2 A0A087X2I1 231 237 PSMC6 26S protease regulatory subunit 10B yes no 2 0.010968 81.1 By MS/MS By MS/MS By matching 1 1 1 1.1455 1.0444 15.807 3 Plateau 1.0649 1.0626 NaN 1 0 Median 1.198 1.0444 NaN 1 0 Median 0.73784 0.80151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33518000 14404000 19114000 14649000 6448800 8200200 16249000 6793600 9455100 2620200 1161800 1458500 0 0 0 0 0 0 0 0 0 7415 138 7706 37306;37307;37308 37377;37378;37379;37380 37378 4 EMFPYEASTPTGISASCR GEKTEERRVERDILKEMFPYEASTPTGISA PYEASTPTGISASCRRPIKGAAGRPLELSD K E M C R R 2 1 0 0 1 0 2 1 0 1 0 0 1 1 2 3 2 0 1 0 0 0 18 0 2002.8765 P42167;G5E972;H0YJH7 P42167 347 364 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 7.5563E-12 109 By MS/MS By MS/MS 1 1 0.64777 0.6648 4.7721 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61297 0.64275 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68454 0.68762 NaN 1 0 Median NaN NaN NaN 0 0 Median 9892800 5822400 4070400 0 0 0 0 0 0 2834500 1741200 1093300 0 0 0 7058300 4081200 2977100 0 0 0 7416 2307 7707 37309;37310 37381;37382;37383 37383 3 EMGFTNMTEIQHK SLCNLVNENTLKAIKEMGFTNMTEIQHKSI IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA K E M H K S 0 0 1 0 0 1 2 1 1 1 0 1 2 1 0 0 2 0 0 0 0 0 13 0 1564.7014 Q9NVP1 Q9NVP1 196 208 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3 0.00012482 93.058 By matching By MS/MS By matching By MS/MS By MS/MS 1 3 2 4 3 1.1999 1.1145 19.258 13 Median NaN NaN NaN 0 0 Median 0.96883 0.8682 NaN 1 0 Median 1.2628 1.3002 9.3842 3 1 Median 1.4775 1.2829 5.8442 2 0 Median 1.1005 1.0836 26.521 4 1 Median 1.1999 0.99596 5.9593 3 0 Median 89104000 40233000 48871000 0 0 0 1037200 462150 575010 38660000 17304000 21356000 754140 294620 459520 45924000 20829000 25095000 2729400 1343900 1385500 7417 4137 7708 37311;37312;37313;37314;37315;37316;37317;37318;37319;37320;37321;37322;37323 37384;37385;37386;37387;37388;37389;37390 37389 7 EMGLSLQWLYSAR LSFVRDLNQYRADIKEMGLSLQWLYSARGD IKEMGLSLQWLYSARGDFFRATSRLTTDFG K E M A R G 1 1 0 0 0 1 1 1 0 0 3 0 1 0 0 2 0 1 1 0 0 0 13 0 1552.7708 P02786;G3V0E5;H7C3V5 P02786 634 646 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0006931 79.741 By MS/MS 2 1.3466 1.1684 13.028 2 Median NaN NaN NaN 0 0 Median 1.3466 1.1684 13.028 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6195000 2688400 3506500 0 0 0 6195000 2688400 3506500 0 0 0 0 0 0 0 0 0 0 0 0 7418 1836 7709;7710 37324;37325 37391;37392 37392 600 2 EMGMGNVER ARHARLNAALATPAKEMGMGNVERCRGFSA LATPAKEMGMGNVERCRGFSAHLMKMLVRQ K E M E R C 0 1 1 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 0 1 0 0 9 0 1021.4321 Q9NU22 Q9NU22 4216 4224 MDN1 Midasin yes yes 2 0.056937 29.162 By MS/MS 1 0.79078 0.89064 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79078 0.89064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1099000 587930 511040 0 0 0 0 0 0 1099000 587930 511040 0 0 0 0 0 0 0 0 0 7419 4112 7711 37326 37393 37393 1 EMGQMQVLQMK EELKEVEEERKQHLKEMGQMQVLQMKSEHQ QHLKEMGQMQVLQMKSEHQKLEENIDNIKR K E M M K S 0 0 0 0 0 3 1 1 0 0 1 1 3 0 0 0 0 0 0 1 0 0 11 0 1321.6192 Q92878;A0A1W2PQ90 Q92878 1044 1054 RAD50 DNA repair protein RAD50 yes no 2 0.00013475 95.099 By matching By MS/MS 1 1 1.2568 1.2136 9.6399 2 Median NaN NaN NaN 0 0 Median 1.4856 1.2992 NaN 1 0 Median 1.0633 1.1336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21429000 10186000 11243000 0 0 0 1489400 575810 913620 19939000 9610300 10329000 0 0 0 0 0 0 0 0 0 7420 3561 7712 37327;37328 37394;37395 37395 2 EMGTPDVR RAPRALKEIRKFAMKEMGTPDVRIDTRLNK IRKFAMKEMGTPDVRIDTRLNKAVWAKGIR K E M V R I 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 8 0 903.41202 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 56 63 RPL31 60S ribosomal protein L31 yes no 2 0.0074447 67.032 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.94696 0.99048 7.3252 5 Median 0.94696 0.91336 NaN 1 0 Median 1.041 0.8634 NaN 1 0 Median 1.02 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93729 0.99364 0.45024 2 0 Median NaN NaN NaN 0 0 Median 26418000 13493000 12925000 16629000 8892700 7736700 5285600 2531900 2753700 3308200 1540900 1767400 0 0 0 1194400 527170 667260 0 0 0 7421 2607 7713 37329;37330;37331;37332;37333 37396;37397;37398;37399 37396 4 EMGTPLADTPTRPVTR PYLGDVAVVVHPGKKEMGTPLADTPTRPVT MGTPLADTPTRPVTRHGGMRDLHESSFSLS K E M T R H 1 2 0 1 0 0 1 1 0 0 1 0 1 0 3 0 4 0 0 1 0 0 16 1 1740.8829 Q9BPU6 Q9BPU6 506 521 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 3 0.00027774 49.482 By MS/MS By MS/MS By matching 2 1 2 0.53411 0.55228 20.302 5 Median 0.53936 0.53139 1.3841 2 1 Median 0.93827 0.85214 NaN 1 0 Median 0.51312 0.55421 0.49369 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30794000 19228000 11566000 19202000 11880000 7321800 3472800 1914300 1558500 8119400 5433500 2685900 0 0 0 0 0 0 0 0 0 7422 3776 7714;7715 37334;37335;37336;37337;37338 37400;37401;37402;37403 37400 1827 4 EMGVIAAMR IEVLSNTFQFTNEAREMGVIAAMRDGFGFI FTNEAREMGVIAAMRDGFGFIKCVDRDVRM R E M M R D 2 1 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 9 0 976.48341 O75534;E9PLT0 O75534 349 357 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.0025402 71.296 By MS/MS By MS/MS By matching 1 2 1 1.4707 1.3685 28.743 4 Median 1.2372 1.1705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6148 1.3843 44.597 2 0 Median NaN NaN NaN 0 0 Median 1.7482 1.5999 NaN 1 0 Median 15113000 6287100 8825700 12911000 5300400 7610600 0 0 0 0 0 0 2081400 953360 1128000 0 0 0 120420 33363 87054 7423 1684 7716 37339;37340;37341;37342 37404;37405;37406;37407 37405 4 EMHLAEQVTNNLK RPPPNMICLLGPSYREMHLAEQVTNNLKEL YREMHLAEQVTNNLKELAQQVTPGDIVSTY R E M L K E 1 0 2 0 0 1 2 0 1 0 2 1 1 0 0 0 1 0 0 1 0 0 13 0 1525.7559 Q9NPI1;I3L4V5 Q9NPI1 582 594 BRD7 Bromodomain-containing protein 7 yes no 2;3 8.4349E-05 85.522 By matching By matching By MS/MS By MS/MS 1 1 3 1 1.0618 1.0052 93.976 6 Median 6.3591 6.5207 NaN 1 0 Median 5.5578 5.5042 NaN 1 0 Median 0.91865 0.95859 2.2914 3 2 Median 1.192 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38296000 12776000 25520000 11390000 1657500 9732900 6537200 848580 5688600 18888000 9591400 9296500 1480900 678880 801980 0 0 0 0 0 0 7424 4053 7717 37343;37344;37345;37346;37347;37348 37408;37409;37410;37411;37412;37413 37410 6 EMHRPELVTK PTDDNSLQALTILYREMHRPELVTKLYEAA TILYREMHRPELVTKLYEAAVKKVPNSEEY R E M T K L 0 1 0 0 0 0 2 0 1 0 1 1 1 0 1 0 1 0 0 1 0 0 10 1 1238.6441 Q14CX7;H0YHR9 Q14CX7 91 100 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 3 0.059039 16.254 By matching By matching By MS/MS 1 1 1 1.0021 1.1469 20.744 3 Median 1.2546 1.2961 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0021 1.1469 NaN 1 0 Median 0.9 0.86491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2389400 1170300 1219100 536230 218560 317670 0 0 0 510680 264130 246550 1342500 687640 654880 0 0 0 0 0 0 7425 2908 7718 37349;37350;37351 37414 37414 1 EMHVGHLR NKKVIVDFSSPNIAKEMHVGHLRSTIIGES SSPNIAKEMHVGHLRSTIIGESISRLFEFA K E M L R S 0 1 0 0 0 0 1 1 2 0 1 0 1 0 0 0 0 0 0 1 0 0 8 0 977.48652 P54136 P54136 206 213 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.013618 52.683 By MS/MS By MS/MS 1 1 1.1663 1.0935 10.257 2 Median 1.161 1.1758 NaN 1 0 Median 1.1718 1.017 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5257000 2513600 2743400 1744000 801530 942460 3513000 1712100 1800900 0 0 0 0 0 0 0 0 0 0 0 0 7426 2480 7719 37352;37353 37415;37416;37417 37416 3 EMIDIYSTR IEASINHEKGYVQSKEMIDIYSTREPQLAF GYVQSKEMIDIYSTREPQLAFHQRISFCLD K E M T R E 0 1 0 1 0 0 1 0 0 2 0 0 1 0 0 1 1 0 1 0 0 0 9 0 1126.5329 O43242 O43242 462 470 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.00069962 103.74 By MS/MS By MS/MS By matching 1 1 1 1.065 1.1126 13.819 3 Median 1.251 1.1837 NaN 1 0 Median 1.0509 0.90885 NaN 1 0 Median 1.065 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33883000 15689000 18194000 17702000 8031700 9670000 12919000 6070200 6849100 3261700 1587100 1674600 0 0 0 0 0 0 0 0 0 7427 1560 7720 37354;37355;37356 37418;37419;37420;37421 37419 4 EMIDIYSTREPQLAFHQR IEASINHEKGYVQSKEMIDIYSTREPQLAF DIYSTREPQLAFHQRISFCLDIHNMSVKAM K E M Q R I 1 2 0 1 0 2 2 0 1 2 1 0 1 1 1 1 1 0 1 0 0 0 18 1 2233.095 O43242 O43242 462 479 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 3 0.017595 19.715 By MS/MS 1 1.0087 0.99378 NaN 1 Median 1.0087 0.99378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6186200 3099600 3086600 6186200 3099600 3086600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7428 1560 7721 37357 37422 37422 1 EMIESMK TALIPGKKAPVLFNKEMIESMKEGSVVVDL KAPVLFNKEMIESMKEGSVVVDLAAEAGGN K E M M K E 0 0 0 0 0 0 2 0 0 1 0 1 2 0 0 1 0 0 0 0 0 0 7 0 866.38778 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 332 338 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.021555 58.981 By MS/MS 1 1.2945 1.1304 NaN 1 Median NaN NaN NaN 0 0 Median 1.2945 1.1304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5336300 2164800 3171600 0 0 0 5336300 2164800 3171600 0 0 0 0 0 0 0 0 0 0 0 0 7429 2814 7722 37358 37423;37424 37424 2 EMIFEDTNLK GSLKCAQYWPQKEEKEMIFEDTNLKLTLIS QKEEKEMIFEDTNLKLTLISEDIKSYYTVR K E M L K L 0 0 1 1 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 10 0 1238.5853 P18031;B4DSN5 P18031 132 141 PTPN1 Tyrosine-protein phosphatase non-receptor type 1;Tyrosine-protein phosphatase non-receptor type yes no 2 0.030718 47.198 By MS/MS By MS/MS 1 1 1.3146 1.2833 10.46 2 Median 1.2406 1.1919 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3929 1.3819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5693000 2338600 3354400 2668800 1195400 1473400 0 0 0 3024200 1143200 1881000 0 0 0 0 0 0 0 0 0 7430 2052 7723 37359;37360 37425;37426 37425 2 EMILNPEGDVNSAK DMIRKRLQNFSYDQREMILNPEGDVNSAKV REMILNPEGDVNSAKVCAHITNIPFSITKM R E M A K V 1 0 2 1 0 0 2 1 0 1 1 1 1 0 1 1 0 0 0 1 0 0 14 0 1515.7239 Q9NTZ6 Q9NTZ6 530 543 RBM12 RNA-binding protein 12 yes yes 2 0.00024919 77.593 By MS/MS 1 0.54646 0.59741 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54646 0.59741 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9262400 5140400 4122000 0 0 0 0 0 0 9262400 5140400 4122000 0 0 0 0 0 0 0 0 0 7431 4111 7724 37361 37427 37427 1 EMIPFAVVGSDHEYQVNGK FDEDSEDRLVNEKFREMIPFAVVGSDHEYQ FAVVGSDHEYQVNGKRILGRKTKWGTIEVE R E M G K R 1 0 1 1 0 1 2 2 1 1 0 1 1 1 1 1 0 0 1 3 0 0 19 0 2119.0044 Q9UHD8 Q9UHD8 493 511 SEPT9 Septin-9 yes yes 3 0.0084246 22.646 By MS/MS 2 1.3521 1.4114 18.421 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3521 1.4114 18.421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13302000 5546200 7756200 0 0 0 0 0 0 13302000 5546200 7756200 0 0 0 0 0 0 0 0 0 7432 4276 7725 37362;37363 37428;37429 37428 2 EMIQLPGAR RRGPLQVAFTIKELREMIQLPGARPILDPV TIKELREMIQLPGARPILDPVDFLGLQDKI R E M A R P 1 1 0 0 0 1 1 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 9 0 1013.5328 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64 P22570 243 251 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.00095024 88.904 By matching By MS/MS By matching 1 1 1 1.3011 1.1324 43.683 3 Median NaN NaN NaN 0 0 Median 2.2277 1.7773 NaN 1 0 Median 0.74805 0.742 NaN 1 0 Median 1.3011 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11550000 5610500 5939600 0 0 0 1602500 587030 1015500 7847200 4081100 3766100 2100500 942400 1158000 0 0 0 0 0 0 7433 2102 7726 37364;37365;37366 37430 37430 1 EMIQLPGARPILDPVDFLGLQDK RRGPLQVAFTIKELREMIQLPGARPILDPV RPILDPVDFLGLQDKIKEVPRPRKRLTELL R E M D K I 1 1 0 3 0 2 1 2 0 2 4 1 1 1 3 0 0 0 0 1 0 0 23 1 2564.3672 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64 P22570 243 265 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 1.803E-05 37.56 By MS/MS By MS/MS 1 1 0.64231 0.61804 15.109 2 Median NaN NaN NaN 0 0 Median 0.75282 0.68773 NaN 1 0 Median 0.54802 0.55542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9265400 5561800 3703600 0 0 0 998670 540490 458180 8266800 5021300 3245400 0 0 0 0 0 0 0 0 0 7434 2102 7727 37367;37368 37431;37432;37433 37431 3 EMISSLGVSK GEKVSLSSKCAEIDREMISSLGVSKAVLNN AEIDREMISSLGVSKAVLNNVIFCHQEDSN R E M S K A 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 3 0 0 0 1 0 0 10 0 1049.5427 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7;C9JNH8 Q92878 139 148 RAD50 DNA repair protein RAD50 yes no 2 0.0093173 45.368 By MS/MS 1 1.4068 1.2708 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4068 1.2708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221100 1288500 1932600 0 0 0 0 0 0 0 0 0 3221100 1288500 1932600 0 0 0 0 0 0 7435 3561 7728 37369 37434;37435 37435 2 EMKPPTSQEEWEAEFQR LTESGLSMVDWHLIKEMKPPTSQEEWEAEF KPPTSQEEWEAEFQRYQQFPEFKILNHDMT K E M Q R Y 1 1 0 0 0 2 5 0 0 0 0 1 1 1 2 1 1 1 0 0 0 0 17 1 2120.9473 Q7KZN9;A0A3B3IRX1 Q7KZN9 107 123 COX15 Cytochrome c oxidase assembly protein COX15 homolog yes no 3 7.1864E-12 109.35 By MS/MS By matching 2 2 0.87789 0.85823 21.209 4 Median 0.67944 0.69874 9.6528 2 0 Median 1.0487 0.99564 1.5802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32274000 19499000 12774000 26731000 16903000 9828500 5542400 2596400 2946000 0 0 0 0 0 0 0 0 0 0 0 0 7436 3215 7729 37370;37371;37372;37373 37436;37437 37437 2 EMKPVIFLDVFLPR AWDREKRLSFAVPFREMKPVIFLDVFLPRV REMKPVIFLDVFLPRVTELALTASDRQTKV R E M P R V 0 1 0 1 0 0 1 0 0 1 2 1 1 2 2 0 0 0 0 2 0 0 14 1 1702.948 P78527 P78527 900 913 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.071184 11.27 By MS/MS By matching By matching By matching 2 1 1 1 0.71797 0.78632 10.86 5 Median 0.74206 0.7565 5.4675 2 0 Median 0.92986 0.91953 NaN 1 0 Median 0.68204 0.80452 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61953 0.69204 NaN 1 0 Median NaN NaN NaN 0 0 Median 1923600 1062200 861360 1257500 721320 536220 368380 169010 199370 105840 72220 33623 0 0 0 191810 99663 92144 0 0 0 7437 2647 7730 37374;37375;37376;37377;37378 37438 37438 1 EMLAAALR PRAPSTSDSVRLKCREMLAAALRTGDDYIA SVRLKCREMLAAALRTGDDYIAIGADEEEL R E M L R T 3 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 873.47422 A0A1W2PPZ5;P23193;A0A1W2PRL9 A0A1W2PPZ5 146 153 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.0029333 103.29 By matching By MS/MS By MS/MS 1 1 1 1.0859 0.97651 6.7117 3 Median NaN NaN NaN 0 0 Median 1.0604 0.9256 NaN 1 0 Median 1.0859 1.0577 NaN 1 0 Median 1.1515 0.97651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27255000 12808000 14447000 0 0 0 7450500 3600900 3849600 12593000 5739500 6853500 7211800 3468000 3743700 0 0 0 0 0 0 7438 341 7731 37379;37380;37381 37439;37440;37441 37439 3 EMLAVDAPR YLKTLTKEDIIKFYKEMLAVDAPRRHKVSV IIKFYKEMLAVDAPRRHKVSVHVLAREMDS K E M P R R 2 1 0 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 9 0 1000.5012 P14735;A0A3B3ISG5 P14735 942 950 IDE Insulin-degrading enzyme yes no 2 0.058746 43.083 By MS/MS 1 1.032 0.86438 NaN 1 Median NaN NaN NaN 0 0 Median 1.032 0.86438 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9062200 4702400 4359800 0 0 0 9062200 4702400 4359800 0 0 0 0 0 0 0 0 0 0 0 0 7439 423 7732 37382 37442 37442 1 EMLELAK QDYSEHCKHNESVVKEMLELAKNYNKAVEE KHNESVVKEMLELAKNYNKAVEEEDKMTPE K E M A K N 1 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 832.43644 O00487 O00487 247 253 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2 0.020413 60.358 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1559 0.98353 12.544 5 Median 1.0598 0.98854 NaN 1 0 Median 1.163 0.9769 0.9575 2 0 Median 0.89069 0.8943 NaN 1 0 Median 1.462 1.2497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22323000 10664000 11659000 8277200 3836000 4441200 11932000 5534700 6397100 1474800 990850 483920 639340 302820 336520 0 0 0 0 0 0 7440 1468 7733 37383;37384;37385;37386;37387 37443;37444;37445 37443 3 EMLESAVLPPEDMSQSGPSGSHPQGPR NKRKRPRKKSPRAHREMLESAVLPPEDMSQ MSQSGPSGSHPQGPRGSPTGGAQLLKRKRK R E M P R G 1 1 0 1 0 2 3 3 1 0 2 0 2 0 5 5 0 0 0 1 0 0 27 0 2819.2854 Q14684 Q14684 485 511 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 6.829E-28 90.468 By MS/MS By matching 4 1 0.42623 0.45141 20.181 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42226 0.44786 16.419 4 1 Median 0.70373 0.626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39830000 24947000 14884000 0 0 0 0 0 0 39651000 24865000 14787000 178780 81863 96916 0 0 0 0 0 0 7441 2890 7734;7735;7736 37388;37389;37390;37391;37392 37446;37447;37448;37449;37450;37451 37449 1583;1584 6 EMLFEGGPRPWILEPSK VDPSSVALVTLGSSKEMLFEGGPRPWILEP LFEGGPRPWILEPSKFFQNVTAEDTDSIGL K E M S K F 0 1 0 0 0 0 3 2 0 1 2 1 1 1 3 1 0 1 0 0 0 0 17 1 1985.0081 Q8TEM1 Q8TEM1 661 677 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.033341 14.686 By matching By matching By MS/MS 2 1 2 0.74879 0.72669 17.392 5 Median 0.82325 0.84339 7.3512 2 0 Median 0.74879 0.72669 NaN 1 0 Median 0.51314 0.6045 6.6598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17267000 10620000 6646600 4832400 2705500 2126900 422570 228350 194210 12012000 7686600 4325500 0 0 0 0 0 0 0 0 0 7442 3477 7737 37393;37394;37395;37396;37397 37452;37453;37454 37454 3 EMLFGSLAR DSEYQLARPSDANRKEMLFGSLARPGHPMG SDANRKEMLFGSLARPGHPMGKFFWGNAET K E M A R P 1 1 0 0 0 0 1 1 0 0 2 0 1 1 0 1 0 0 0 0 0 0 9 0 1022.5219 O43847;G3V1R5;F5H7V1 O43847 327 335 NRD1 Nardilysin yes no 2 0.016483 42.599 By MS/MS 1 1.1554 1.1369 NaN 1 Median 1.1554 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2310700 953950 1356700 2310700 953950 1356700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7443 1597 7738 37398 37455;37456 37455 2 EMLGGEIIPR SARILKLPSFELLHKEMLGGEIIPRSILMT ELLHKEMLGGEIIPRSILMTTFESSHYLLC K E M P R S 0 1 0 0 0 0 2 2 0 2 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1113.5852 Q16531;F5GY55 Q16531 580 589 DDB1 DNA damage-binding protein 1 yes no 2 0.00038123 80.165 By MS/MS By matching By MS/MS By MS/MS 2 2 5 2 0.87671 0.76003 59.525 9 Median 1.0833 1.0454 NaN 1 0 Median 1.0136 0.86438 18.195 2 0 Median 0.66524 0.6647 7.106 4 1 Median 2.5217 2.2577 91.707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68631000 38479000 30151000 7933600 3658500 4275100 9040200 4282100 4758000 46343000 28366000 17977000 5313300 2172500 3140800 0 0 0 0 0 0 7444 2985 7739;7740 37399;37400;37401;37402;37403;37404;37405;37406;37407;37408;37409 37457;37458;37459;37460;37461;37462;37463;37464;37465;37466 37460 1636 10 EMLNLYIENEGK VDLPIENQLLWQIDREMLNLYIENEGKMIM IDREMLNLYIENEGKMIMQDKLEKERNDAK R E M G K M 0 0 2 0 0 0 3 1 0 1 2 1 1 0 0 0 0 0 1 0 0 0 12 0 1451.6966 P34932;A0A087WYC1 P34932 592 603 HSPA4 Heat shock 70 kDa protein 4 yes no 2 3.1447E-06 109.83 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0999 0.97402 46.778 5 Median 1.0523 1.0143 NaN 1 0 Median 1.1067 0.95201 3.2315 2 0 Median 1.1138 1.2244 NaN 1 1 Median 0.40941 0.37156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57502000 26326000 31177000 20546000 9584400 10962000 30580000 13861000 16720000 6325900 2846000 3479900 49795 34136 15659 0 0 0 0 0 0 7445 2230 7741 37410;37411;37412;37413;37414 37467;37468;37469;37470 37468 4 EMLQAQLDR KKGIKEEVQLTSKQKEMLQAQLDREAQVRR LTSKQKEMLQAQLDREAQVRRRLQELDGEL K E M D R E 1 1 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1102.5441 Q92616 Q92616 832 840 GCN1L1 Translational activator GCN1 yes yes 2 0.001536 80.438 By MS/MS 1 1.1917 1.0166 NaN 1 Median NaN NaN NaN 0 0 Median 1.1917 1.0166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4025500 1323500 2702000 0 0 0 4025500 1323500 2702000 0 0 0 0 0 0 0 0 0 0 0 0 7446 3544 7742 37415 37471;37472 37472 2 EMLQQSK RGVVDSEDLPLNISREMLQQSKILKVIRKN DLPLNISREMLQQSKILKVIRKNLVKKCLE R E M S K I 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 7 0 862.42185 P07900;P08238;Q58FF7 P07900 401 407 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2 0.0030389 105.39 By MS/MS By MS/MS 1 2 1.197 1.0468 13.937 3 Median 1.2421 1.2492 NaN 1 0 Median 1.1377 0.99658 6.9502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6959900 3085600 3874300 1326000 566340 759700 5633800 2519300 3114600 0 0 0 0 0 0 0 0 0 0 0 0 7447 1894;1899 7743 37416;37417;37418 37473;37474;37475;37476;37477;37478;37479;37480;37481;37482;37483;37484;37485;37486;37487 37483 15 EMMIVMR ELREPQFRDAEEKYREMMIVMRTTELVNKD RDAEEKYREMMIVMRTTELVNKDLDIYYKT R E M M R T 0 1 0 0 0 0 1 0 0 1 0 0 3 0 0 0 0 0 0 1 0 0 7 0 908.4282 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1106 1112 RAD50 DNA repair protein RAD50 yes no 2 0.016999 66.994 By matching By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.2397 1.0514 36.173 6 Median 0.50112 0.50325 NaN 1 0 Median 1.2414 1.0654 NaN 1 0 Median 0.94348 1.0376 NaN 1 0 Median 1.536 1.354 NaN 1 0 Median 1.281 1.3393 NaN 1 0 Median 1.2379 1.0161 NaN 1 0 Median 14665000 7229400 7435400 1600400 1050200 550160 1924500 787360 1137100 8632000 4318500 4313500 758280 273830 484450 1621000 736890 884140 128710 62660 66055 7448 3561 7744 37419;37420;37421;37422;37423;37424 37488;37489;37490 37489 3 EMMLVTSGAVAFGK ASIVEQVSVLQNQGREMMLVTSGAVAFGKQ REMMLVTSGAVAFGKQRLRHEILLSQSVRQ R E M G K Q 2 0 0 0 0 0 1 2 0 0 1 1 2 1 0 1 1 0 0 2 0 0 14 0 1439.7153 P54886 P54886 111 124 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 5.6927E-08 105.86 By MS/MS By MS/MS By matching 1 4 2 1.3132 1.333 20.434 7 Median 1.128 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3232 1.382 18.853 4 2 Median 1.3759 1.1999 12.856 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31966000 13642000 18324000 4723600 2207700 2515900 0 0 0 25643000 10852000 14791000 1599400 582240 1017100 0 0 0 0 0 0 7449 2488 7745;7746;7747 37425;37426;37427;37428;37429;37430;37431 37491;37492;37493;37494;37495;37496 37494 1168;1169 6 EMNDAAMFYTNR LGWVAMAPKPGPYVKEMNDAAMFYTNRVLK YVKEMNDAAMFYTNRVLKEYKDVDKKHVDW K E M N R V 2 1 2 1 0 0 1 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 12 0 1461.6017 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 156 167 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2 1.7424E-05 97.456 By MS/MS By MS/MS By matching By matching 5 4 1 1 1.1316 1.0728 11.352 11 Median 1.1687 1.094 6.1635 5 0 Median 1.1141 0.95223 4.7508 4 0 Median 1.2264 1.273 NaN 1 0 Median 1.3976 1.2107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77593000 34504000 43089000 60298000 26888000 33411000 12492000 5625400 6866400 4063100 1685400 2377700 739680 305470 434200 0 0 0 0 0 0 7450 2686 7748;7749 37432;37433;37434;37435;37436;37437;37438;37439;37440;37441;37442 37497;37498;37499;37500;37501;37502;37503 37499 1383;1384 6 EMNPALGIDCLHK NPIQTMTEVRARQVKEMNPALGIDCLHKGT VKEMNPALGIDCLHKGTNDMKQQHVIETLI K E M H K G 1 0 1 1 1 0 1 1 1 1 2 1 1 0 1 0 0 0 0 0 0 0 13 0 1496.7116 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 484 496 CCT5 T-complex protein 1 subunit epsilon yes no 3 0.0048402 32.068 By MS/MS By matching 1 2 0.94505 0.87064 4.3952 3 Median 0.90927 0.87207 NaN 1 0 Median 0.96689 0.83847 5.3241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9300500 4747800 4552700 4512100 2254700 2257400 4788500 2493100 2295300 0 0 0 0 0 0 0 0 0 0 0 0 7451 2364 7750 37443;37444;37445 37504;37505 37504 2 EMQENDASMR LEDSQIEKERDVILREMQENDASMRDVVFN DVILREMQENDASMRDVVFNYLHATAFQGT R E M M R D 1 1 1 1 0 1 2 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 10 0 1209.4754 P31930 P31930 171 180 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.00038066 80.239 By MS/MS By MS/MS By matching 1 1 1 1.6831 1.526 23.845 3 Plateau 1.3972 1.375 NaN 1 0 Median 1.761 1.526 NaN 1 0 Median 1.0094 0.96802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2926800 1056100 1870800 1012600 359830 652790 1724300 595590 1128700 189950 100650 89298 0 0 0 0 0 0 0 0 0 7452 2205 7751 37446;37447;37448 37506;37507;37508 37508 3 EMQLRQEEER RRMEELHNQEMQKRKEMQLRQEEERRRREE MQKRKEMQLRQEEERRRREEEMMIRQREME K E M E R R 0 2 0 0 0 2 4 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 1 1346.6249 P23246;H0Y9K7 P23246 562 571 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.01418 29.767 By MS/MS 1 0.91381 0.99287 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91381 0.99287 NaN 1 0 Median NaN NaN NaN 0 0 Median 1841800 963420 878340 0 0 0 0 0 0 0 0 0 0 0 0 1841800 963420 878340 0 0 0 7453 2107 7752 37449 37509 37509 1 EMQNLSFQDCYSSK LTGGDKAFAAGADIKEMQNLSFQDCYSSKF KEMQNLSFQDCYSSKFLKHWDHLTQVKKPV K E M S K F 0 0 1 1 1 2 1 0 0 0 1 1 1 1 0 3 0 0 1 0 0 0 14 0 1735.7182 P30084 P30084 102 115 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.011177 33.409 By MS/MS By MS/MS 1 1 1.4102 1.2508 4.4098 2 Median 1.3026 1.2124 NaN 1 0 Median 1.5266 1.2905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7433300 3320700 4112600 4678200 2202200 2476000 2755100 1118400 1636600 0 0 0 0 0 0 0 0 0 0 0 0 7454 2186 7753 37450;37451 37510;37511 37511 2 EMQPTHPIR QSQQAYQEAFEISKKEMQPTHPIRLGLALN FEISKKEMQPTHPIRLGLALNFSVFYYEIL K E M I R L 0 1 0 0 0 1 1 0 1 1 0 0 1 0 2 0 1 0 0 0 0 0 9 0 1107.5495 P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80;P27348;P31946 P63104 159 167 YWHAZ;YWHAQ;YWHAB 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 2 1 0.90202 0.7788 5.8523 10 Median 0.77557 0.74043 3.0896 3 0 Median 0.9518 0.80927 5.3058 3 0 Median 0.79185 0.76074 NaN 1 0 Median 0.93738 0.78073 0.44064 2 0 Median 0.90142 0.88602 NaN 1 0 Median NaN NaN NaN 0 0 Median 59612000 32682000 26931000 35103000 19513000 15590000 8103200 4154400 3948800 13607000 7559800 6047500 679380 375900 303480 2119800 1078400 1041500 0 0 0 7455 2618;2210;2152 7754 37452;37453;37454;37455;37456;37457;37458;37459;37460;37461 37512;37513;37514;37515;37516;37517;37518;37519 37513 8 EMRDELHVR TLDGKEYITPAQISKEMRDELHVRGGRVNI PAQISKEMRDELHVRGGRVNIVDLQQVINV K E M V R G 0 2 0 1 0 0 2 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 9 1 1183.5768 O94874 O94874 65 73 UFL1 E3 UFM1-protein ligase 1 yes yes 3 0.0021221 66.621 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1006600 0 1006600 423290 0 423290 583280 0 583280 0 0 0 0 0 0 0 0 0 0 0 0 7456 1732 7755 37462;37463 37520;37521 37521 2 EMSMALLSNLAQGDALAAR TLVRYVGDRKNPVCREMSMALLSNLAQGDA ALLSNLAQGDALAARAIAVQKGSIGNLISF R E M A R A 5 1 1 1 0 1 1 1 0 0 4 0 2 0 0 2 0 0 0 0 0 0 19 0 1960.971 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63 A0A3F2YNW7 2212 2230 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.00015436 40.577 By MS/MS 1 0.82126 0.91248 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82126 0.91248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1364800 715130 649710 0 0 0 0 0 0 1364800 715130 649710 0 0 0 0 0 0 0 0 0 7457 449 7756 37464 37522;37523 37522 2 EMSNINHPDIR SQNQRLQLLLLNPLKEMSNINHPDIRLKQL NPLKEMSNINHPDIRLKQLECVLQILQSQG K E M I R L 0 1 2 1 0 0 1 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 11 0 1324.6194 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 872 882 MON2 Protein MON2 homolog yes no 3 0.010615 28.232 By matching By MS/MS 1 1 0.90815 0.8324 3.4203 2 Median 0.84959 0.85278 NaN 1 0 Median 0.97076 0.81251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3479700 1803000 1676700 1812200 873170 938990 1667600 929860 737710 0 0 0 0 0 0 0 0 0 0 0 0 7458 353 7757 37465;37466 37524 37524 1 EMSSIISLNKR KELQLLSETLSLEKKEMSSIISLNKREIEE LEKKEMSSIISLNKREIEELTQENGTLKEI K E M K R E 0 1 1 0 0 0 1 0 0 2 1 1 1 0 0 3 0 0 0 0 0 0 11 1 1276.6809 P49454 P49454 957 967 CENPF Centromere protein F yes yes 2;3 0.00020611 84.213 By MS/MS By matching 3 1 1.2641 1.3533 26.203 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2299 1.4253 27.613 3 0 Median 1.2993 1.2118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18746000 8055100 10690000 0 0 0 0 0 0 17959000 7717700 10241000 786920 337370 449550 0 0 0 0 0 0 7459 2383 7758 37467;37468;37469;37470 37525;37526 37525 2 EMSSSTLNLVVAGAPK IGIIDGEYVVNPTRKEMSSSTLNLVVAGAP MSSSTLNLVVAGAPKSQIVMLEASAENILQ K E M P K S 2 0 1 0 0 0 1 1 0 0 2 1 1 0 1 3 1 0 0 2 0 0 16 0 1602.8287 Q8TCS8 Q8TCS8 208 223 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.00017035 57.348 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.98338 0.99487 20.597 5 Median 0.98338 0.92132 NaN 1 0 Median 1.313 1.1834 NaN 1 0 Median 0.86603 0.85659 21.165 2 1 Median 1.4116 1.2273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13995000 7192800 6802300 5338400 2720600 2617800 474290 208790 265500 7367000 3913800 3453100 815390 349560 465830 0 0 0 0 0 0 7460 3467 7759 37471;37472;37473;37474;37475 37527;37528 37527 2 EMTADVIELK LMMASESTLLAQEPREMTADVIELKGKFLI AQEPREMTADVIELKGKFLINLEGGDIREE R E M L K G 1 0 0 1 0 0 2 0 0 1 1 1 1 0 0 0 1 0 0 1 0 0 10 0 1147.5795 Q9NSE4 Q9NSE4 948 957 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.0014621 65.305 By MS/MS By matching 1 1 1.2883 1.1739 15.967 2 Median 1.0805 1.0486 NaN 1 0 Median 1.5361 1.3142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12639000 5269500 7369900 7829800 3490500 4339300 4809700 1779100 3030600 0 0 0 0 0 0 0 0 0 0 0 0 7461 4103 7760 37476;37477 37529;37530 37530 2 EMTAEFYALK GLEVIESTNLKYFTKEMTAEFYALKGMFLA KYFTKEMTAEFYALKGMFLAQINKSEEANK K E M L K G 2 0 0 0 0 0 2 0 0 0 1 1 1 1 0 0 1 0 1 0 0 0 10 0 1201.5689 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3087 3096 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00098051 69.598 By MS/MS By matching 1 2 1.0116 1.0536 13.585 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0116 1.081 NaN 1 0 Median 1.0751 0.94316 15.655 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14688000 6858000 7830100 0 0 0 0 0 0 13443000 6415200 7027300 1245500 442720 802740 0 0 0 0 0 0 7462 991 7761 37478;37479;37480 37531 37531 1 EMTDSSHIPVSDMVMYGYR FTATLEQARHNNRFREMTDSSHIPVSDMVM SSHIPVSDMVMYGYRKQFEAPTLAEGFSAI R E M Y R K 0 1 0 2 0 0 1 1 1 1 0 0 3 0 1 3 1 0 2 2 0 0 19 0 2216.9541 M0QYH2;Q96T60;A0A0D9SFL2;M0R097 M0QYH2 434 452 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 3 1.9869E-10 72.583 By MS/MS By MS/MS 2 2 0.82108 0.76218 19.498 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66659 0.68043 3.3615 2 1 Median 1.0619 0.92232 14.285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20662000 12769000 7893200 0 0 0 0 0 0 19338000 12076000 7261300 1324800 692820 631960 0 0 0 0 0 0 7463 1418 7762;7763 37481;37482;37483;37484 37532;37533;37534 37533 454 3 EMTGIWR VKVVAKKYRNFDIPKEMTGIWRYLTNAYSR YRNFDIPKEMTGIWRYLTNAYSRDEFTNTC K E M W R Y 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 7 0 891.42727 Q9Y696 Q9Y696 213 219 CLIC4 Chloride intracellular channel protein 4 yes yes 2 0.0026408 117.7 By MS/MS By MS/MS By MS/MS 2 1 1 1.1267 1.0381 4.1849 4 Median 1.1273 1.0616 2.1583 2 0 Median 1.1535 0.97531 NaN 1 0 Median 1.0764 1.0308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40980000 19516000 21464000 31940000 15329000 16611000 4492400 2009200 2483200 4547600 2177400 2370300 0 0 0 0 0 0 0 0 0 7464 4483 7764 37485;37486;37487;37488 37535;37536;37537;37538;37539;37540;37541 37538 7 EMTLDEWK NKENEVEEVKEEGPKEMTLDEWKAIQNKDR VKEEGPKEMTLDEWKAIQNKDRAKVEFNIR K E M W K A 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 8 0 1050.4692 Q8NC51 Q8NC51 287 294 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0058736 73.616 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 3 1 1.1162 0.98497 8.4273 8 Median 1.0931 1.0123 NaN 1 0 Median 1.1161 0.94903 NaN 1 0 Median 1.0447 1.0428 14.484 2 0 Median 1.2305 1.0319 7.4426 3 0 Median NaN NaN NaN 0 0 Median 1.07 0.91189 NaN 1 0 Median 40760000 19243000 21516000 12911000 6086800 6824700 5874800 2789200 3085600 13722000 6675100 7047300 7845300 3485000 4360300 0 0 0 405630 207220 198410 7465 3414 7765 37489;37490;37491;37492;37493;37494;37495;37496 37542;37543;37544;37545;37546 37543 5 EMVANWDSLR DAGILRLYTWVEWVKEMVANWDSLRSGPAS VEWVKEMVANWDSLRSGPASTFNDRVFASE K E M L R S 1 1 1 1 0 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 10 0 1219.5656 Q9P2J5 Q9P2J5 776 785 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0011133 87.639 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.3237 1.1584 8.0201 5 Median 1.1748 1.1321 NaN 1 1 Median 1.3237 1.1166 NaN 1 0 Median 1.0879 1.1869 NaN 1 0 Median 1.3511 1.1584 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6057 1.3632 NaN 1 0 Median 18259000 8451500 9807600 10369000 4749900 5618600 5222000 2316000 2906000 1915600 1050600 865050 633710 285490 348220 0 0 0 119280 49551 69728 7466 4224 7766 37497;37498;37499;37500;37501 37547;37548 37547 2 EMVATQQEMMDAQLR PTFPPDYGFPERKEREMVATQQEMMDAQLR EMVATQQEMMDAQLRLQLRDYCAHHLIRLL R E M L R L 2 1 0 1 0 3 2 0 0 0 1 0 3 0 0 0 1 0 0 1 0 0 15 0 1779.7954 P17568 P17568 38 52 NDUFB7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 yes yes 2 6.9513E-10 159.94 By MS/MS By MS/MS 1 1 1.3699 1.2322 35.707 2 Median 0.98325 0.95722 NaN 1 0 Median 1.9085 1.5861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11007000 5163600 5843400 9565900 4726300 4839600 1441100 437340 1003800 0 0 0 0 0 0 0 0 0 0 0 0 7467 2043 7767 37502;37503 37549;37550;37551;37552 37549 4 EMVEIITK GLLCIHASADPRQVREMVEIITKEFILMGG ADPRQVREMVEIITKEFILMGGTVDTVELE R E M T K E 0 0 0 0 0 0 2 0 0 2 0 1 1 0 0 0 1 0 0 1 0 0 8 0 961.51542 Q10713;Q5SXN9 Q10713 403 410 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 2 0.0095557 60.59 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1402 1.0423 19.507 4 Median 1.2173 1.128 NaN 1 0 Median 1.6635 1.4162 NaN 1 0 Median 0.97637 0.96306 NaN 1 0 Median 1.0681 0.91904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23521000 10764000 12757000 12423000 5672700 6750200 4806000 1745300 3060700 4739400 2611200 2128200 1552800 734630 818200 0 0 0 0 0 0 7468 2754 7768 37504;37505;37506;37507 37553;37554;37555 37553 3 EMVELPLR YDDIGGCRKQLAQIKEMVELPLRHPALFKA KQLAQIKEMVELPLRHPALFKAIGVKPPRG K E M L R H 0 1 0 0 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 8 0 985.52665 P55072 P55072 218 225 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0039759 85.265 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0307 0.99154 36.374 7 Median 1.0179 0.99154 5.2502 3 1 Median 1.1618 1.0075 4.43 2 0 Median 1.1459 1.2253 NaN 1 0 Median 0.41329 0.40374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61625000 29366000 32259000 39016000 18725000 20290000 17556000 8250900 9305000 4415500 2073000 2342600 637760 317000 320760 0 0 0 0 0 0 7469 2494 7769 37508;37509;37510;37511;37512;37513;37514 37556;37557;37558;37559;37560 37557 5 EMVELPLRHPALFK YDDIGGCRKQLAQIKEMVELPLRHPALFKA KEMVELPLRHPALFKAIGVKPPRGILLYGP K E M F K A 1 1 0 0 0 0 2 0 1 0 3 1 1 1 2 0 0 0 0 1 0 0 14 1 1678.9229 P55072 P55072 218 231 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 2.0284E-07 118.4 By MS/MS 3 0.88201 0.90805 0.87338 3 Median 0.88201 0.90805 0.87338 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34390000 18519000 15870000 34390000 18519000 15870000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7470 2494 7770 37515;37516;37517 37561;37562;37563;37564;37565;37566 37561 6 EMVKAEEDTQFNYHR SRSGELAQEYDKRKKEMVKAEEDTQFNYHR EMVKAEEDTQFNYHRKKNIAAERKEAKQEK K E M H R K 1 1 1 1 0 1 3 0 1 0 0 1 1 1 0 0 1 0 1 1 0 0 15 1 1895.8472 Q14683;G8JLG1;H0Y7K8 Q14683 174 188 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3;4 4.7762E-10 113.25 By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 2 1.0131 1.1022 19.361 9 Median 1.0131 1.0216 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86876 0.98477 15.936 2 0 Median 1.2994 1.2545 0.22368 2 0 Median 0.96146 1.0714 36.868 2 0 Median 1.2038 1.0553 26.901 2 0 Median 53733000 27017000 26716000 6021800 2908900 3113000 0 0 0 28337000 15130000 13208000 3185600 1416400 1769200 14445000 6838500 7606300 1743800 723900 1019900 7471 2889 7771 37518;37519;37520;37521;37522;37523;37524;37525;37526 37567;37568;37569;37570;37571 37569 5 EMVLAQEESAR LEEALRESVQITAEREMVLAQEESARTNAE TAEREMVLAQEESARTNAEKQVEELLMAME R E M A R T 2 1 0 0 0 1 3 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 11 0 1261.5973 X6RLX0;Q8IUD2;G8JLD3;K7EPD6;A0A0U1RQN0 X6RLX0 861 871 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00016143 93.111 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.0029 0.91414 14.02 4 Median 0.94049 0.91323 NaN 1 0 Median 1.0695 0.91505 NaN 1 0 Median 0.68693 0.75488 NaN 1 0 Median 1.2507 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13149000 6568000 6581400 3408000 1666300 1741700 2229900 1103400 1126500 3506500 2065700 1440800 4005000 1732500 2272500 0 0 0 0 0 0 7472 3311 7772;7773 37527;37528;37529;37530;37531 37572;37573;37574;37575 37573 1709 4 EMVLELIR PLRITGDPYKVQQAKEMVLELIRDQGGFRE YKVQQAKEMVLELIRDQGGFREVRNEYGSR K E M I R D 0 1 0 0 0 0 2 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1001.558 Q96AE4;E9PEB5 Q96AE4 249 256 FUBP1 Far upstream element-binding protein 1 yes no 2 0.0079205 65.038 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 8 7 4 4 1.2891 1.1708 11.257 26 Median 1.1629 1.1217 13.43 2 0 Median 1.2649 1.0946 NaN 1 0 Median 1.2347 1.2487 14.014 8 0 Median 1.3693 1.1777 5.4915 7 0 Median 1.1125 1.1505 16.216 4 0 Median 1.3121 1.11 7.5647 4 0 Median 147940000 65581000 82357000 10368000 4702100 5666200 8618400 4255900 4362500 93487000 41895000 51591000 13408000 5549700 7858000 16820000 6910600 9909800 5237100 2268000 2969100 7473 3599 7774 37532;37533;37534;37535;37536;37537;37538;37539;37540;37541;37542;37543;37544;37545;37546;37547;37548;37549;37550;37551;37552;37553;37554;37555;37556;37557 37576;37577;37578;37579;37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591;37592;37593;37594;37595;37596;37597;37598;37599 37576 24 EMVPEFVVPDLTGFK GIGFLTSGWRFVQIKEMVPEFVVPDLTGFK EMVPEFVVPDLTGFKLKPYVSYLAPESEET K E M F K L 0 0 0 1 0 0 2 1 0 0 1 1 1 2 2 0 1 0 0 3 0 0 15 0 1706.8589 Q8IXM3 Q8IXM3 55 69 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 0.043672 23.851 By MS/MS By matching 1 1 0.98067 0.89446 10.061 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8244 0.83303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1666 0.96041 NaN 1 0 Median 843360 463730 379630 0 0 0 0 0 0 779350 436430 342920 0 0 0 0 0 0 64009 27295 36714 7474 3334 7775 37558;37559 37600 37600 1 EMVQNLMVLR FREDQIYRIDHYLGKEMVQNLMVLRFANRI HYLGKEMVQNLMVLRFANRIFGPIWNRDNI K E M L R F 0 1 1 0 0 1 1 0 0 0 2 0 2 0 0 0 0 0 0 2 0 0 10 0 1231.6417 P11413;E7EUI8;E9PD92;E7EM57 P11413 206 215 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.00034304 101.28 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.94134 0.80796 32.971 4 Median 1.1779 1.1303 NaN 1 0 Median 0.84866 0.71251 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0441 0.91621 NaN 1 0 Median 0.58827 0.52617 NaN 1 0 Median NaN NaN NaN 0 0 Median 32651000 16833000 15818000 9717600 4684500 5033100 22425000 11919000 10506000 0 0 0 241870 73358 168510 266120 155800 110320 0 0 0 7475 1964 7776 37560;37561;37562;37563 37601;37602;37603;37604 37601 4 EMVSQYLYTSK EKQQPLREKDIIIKREMVSQYLYTSKAGMS IIKREMVSQYLYTSKAGMSQKESSKSAMMY R E M S K A 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 2 1 0 2 1 0 0 11 0 1347.6381 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28;B4E2I7;A0A2R8YEF8 A0A0G2JH68 123 133 DIAPH1 Protein diaphanous homolog 1 yes no 2 7.3812E-08 131.11 By MS/MS By MS/MS By MS/MS 2 1 1 1.0978 0.97713 9.6425 3 Plateau 1.1023 1.0595 NaN 1 1 Median 1.0566 0.90119 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97972 0.89225 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30598000 13785000 16814000 24242000 10976000 13266000 5317800 2272400 3045400 0 0 0 1038500 536000 502470 0 0 0 0 0 0 7476 274 7777 37564;37565;37566;37567 37605;37606;37607;37608 37605 4 EMVVQLLDDFK LLKSVRNSDPNDPNREMVVQLLDDFKISGV DPNREMVVQLLDDFKISGVNGTHICMVFEV R E M F K I 0 0 0 2 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 11 0 1335.6744 H3BLV9;Q96SB4 H3BLV9 158 168 SRPK1 SRSF protein kinase 1 yes no 2 0.0048509 47.198 By matching By MS/MS By matching 1 3 1 1.122 1.1137 16.792 5 Median 1.0944 1.1137 NaN 1 0 Median 1.122 0.98913 22.343 3 0 Median NaN NaN NaN 0 0 Median 1.3335 1.1653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6594300 3123500 3470800 713690 305560 408130 5817600 2794200 3023300 0 0 0 62987 23663 39325 0 0 0 0 0 0 7477 1207 7778 37568;37569;37570;37571;37572 37609 37609 1 EMVVQVER ELQSHAKSPPSPVEREMVVQVEREKTEAEP PPSPVEREMVVQVEREKTEAEPTHVNEEKL R E M E R E 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 3 0 0 8 0 988.50117 Q02952 Q02952 1336 1343 AKAP12 A-kinase anchor protein 12 yes yes 2 0.0023085 121.31 By MS/MS By MS/MS 1 3 1.2441 1.054 18.269 4 Median 1.4133 1.3958 NaN 1 0 Median 1.2002 1.0091 9.5779 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42194000 18647000 23546000 7996000 3310600 4685400 34198000 15337000 18861000 0 0 0 0 0 0 0 0 0 0 0 0 7478 2705 7779 37573;37574;37575;37576 37610;37611;37612;37613;37614;37615;37616;37617 37611 8 EMWTEVPK KAFDRHCNMVLENVKEMWTEVPKSGKGKKK MVLENVKEMWTEVPKSGKGKKKSKPVNKDR K E M P K S 0 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 8 0 1018.4794 P62316;K7EJB5 P62316 72 79 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0074447 67.032 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 2 4 2 0.99775 0.90131 22.714 16 Median 0.89004 0.83194 14.409 2 0 Median 1.1329 0.94253 7.6162 3 0 Median 0.86139 0.85715 4.3245 3 0 Median 1.1013 0.88572 2.0269 2 0 Median 1.0392 1.143 28.385 4 0 Median 0.92113 0.75699 14.135 2 0 Median 396450000 200210000 196240000 19496000 9545600 9950000 36005000 17023000 18982000 197230000 100650000 96575000 22509000 10408000 12101000 49210000 27140000 22070000 72009000 35444000 36566000 7479 2586 7780;7781 37577;37578;37579;37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591;37592 37618;37619;37620;37621;37622;37623;37624;37625;37626;37627;37628 37626 1253 11 ENAAYFQFFSDVR SWMLQLCCCIEAHLKENAAYFQFFSDVREA LKENAAYFQFFSDVREAEGQLQKLQEALRR K E N V R E 2 1 1 1 0 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 13 0 1592.726 Q15149;H0YDN1 Q15149 857 869 PLEC Plectin yes no 2 0.00062741 69.01 By MS/MS 1 0.65279 0.65613 NaN 1 Median 0.65279 0.65613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1400000 822640 577350 1400000 822640 577350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7480 2933 7782 37593 37629 37629 1 ENADIIR LRVEAEARARAKAERENADIIREQIRLKAA RARAKAERENADIIREQIRLKAAEHRQTVL R E N I R E 1 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 829.42938 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 188 194 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.022964 57.281 By matching By MS/MS 1 1 1.1327 1.0499 2.7086 2 Median 1.0373 1.03 NaN 1 0 Median 1.237 1.0702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13218000 6258200 6959700 3044100 1620200 1423900 10174000 4638000 5535800 0 0 0 0 0 0 0 0 0 0 0 0 7481 1140;4133;3098 7783 37594;37595 37630 37630 1 ENAEVDGDDDAEEMEAK TDETELARQMERLERENAEVDGDDDAEEME AEVDGDDDAEEMEAKAED____________ R E N A K A 3 0 1 4 0 0 5 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 17 0 1865.7109 P05198 P05198 296 312 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 6.5652E-14 111.79 By MS/MS By MS/MS 1 1 0.90073 0.81069 12.483 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77157 0.7422 NaN 1 0 Median 1.0515 0.8855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12417000 6288700 6127800 0 0 0 0 0 0 8928600 4815200 4113400 3487900 1473500 2014400 0 0 0 0 0 0 7482 1862 7784 37596;37597 37631;37632;37633;37634 37632 4 ENAGEDPGLAR PGSGNPCHEASAAQKENAGEDPGLARQAPK AAQKENAGEDPGLARQAPKPRKQRSSLLEK K E N A R Q 2 1 1 1 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1127.5207 P81605 P81605 43 53 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 0.0033364 73.233 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 4 0.062679 0.056457 87.119 12 Median 0.032723 0.032522 21.167 2 2 Median 0.064607 0.054711 39.24 3 3 Median 0.081512 0.084293 52.24 2 2 Median 0.012374 0.010833 19.565 2 2 Median 0.098162 0.10386 37.351 3 3 Median NaN NaN NaN 0 0 Median 55558000 53412000 2145600 7780200 7579800 200360 17355000 16991000 364470 6758300 6426600 331740 8295100 8171500 123640 15369000 14244000 1125400 0 0 0 7483 2650 7785 37598;37599;37600;37601;37602;37603;37604;37605;37606;37607;37608;37609;37610;37611;37612;37613;37614 37635;37636;37637;37638;37639;37640;37641;37642;37643;37644;37645;37646;37647;37648;37649;37650;37651 37648 17 ENALLELSK KIYQWINELSSPETRENALLELSKKRESVP SSPETRENALLELSKKRESVPDLAPMLWHS R E N S K K 1 0 1 0 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1015.555 Q92600;F8WBZ6 Q92600 36 44 RQCD1 Cell differentiation protein RCD1 homolog yes no 2 0.0032184 66.621 By matching By MS/MS 1 1 0.91724 0.86531 19.232 2 Median 0.79878 0.75528 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0533 0.99136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11160000 5601500 5558900 4687800 2525000 2162800 0 0 0 6472600 3076500 3396100 0 0 0 0 0 0 0 0 0 7484 3542 7786 37615;37616 37652 37652 1 ENALSELDVPFK GIWGGNVALDNLQIKENALSELDVPFKVKA QIKENALSELDVPFKVKAGQIDKLTLKIPW K E N F K V 1 0 1 1 0 0 2 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 12 0 1360.6874 Q709C8 Q709C8 45 56 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.028423 47.187 By MS/MS 1 0.55514 0.54941 NaN 1 Median 0.55514 0.54941 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427400 1418000 1009500 2427400 1418000 1009500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7485 3205 7787 37617 37653 37653 1 ENALVQMADANQAQLAMNHLSGQR VYGDVHRVKIMFNKKENALVQMADANQAQL ANQAQLAMNHLSGQRLYGKVLRATLSKHQA K E N Q R L 5 1 3 1 0 4 1 1 1 0 3 0 2 0 0 1 0 0 0 1 0 0 24 0 2609.2439 O95758 O95758 396 419 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 3 2.5916E-24 107.08 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 0.93993 0.8267 10.204 7 Median 1.0032 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79281 0.79572 3.3519 2 0 Median 0.99671 0.87312 7.7319 2 0 Median 0.90228 0.90606 12.962 2 2 Median NaN NaN NaN 0 0 Median 40773000 20840000 19933000 2552500 1231700 1320800 0 0 0 27338000 13309000 14029000 942180 445990 496190 9939800 5853400 4086400 0 0 0 7486 1791 7788 37618;37619;37620;37621;37622;37623;37624 37654;37655;37656;37657;37658 37656 5 ENALVQMADGNQAQLAMSHLNGHK VYGDVQRVKILFNKKENALVQMADGNQAQL GNQAQLAMSHLNGHKLHGKPIRITLSKHQN K E N H K L 4 0 3 1 0 3 1 2 2 0 3 1 2 0 0 1 0 0 0 1 0 0 24 0 2576.2224 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;K7EK45 A0A0U1RRM4 432 455 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3;4 6.0342E-08 43.611 By MS/MS By MS/MS By matching 1 1 1 1.2306 1.0606 28.283 3 Median 1.6233 1.5579 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92818 0.89746 NaN 1 0 Median 1.2306 1.0606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34318000 15003000 19315000 4348400 1372400 2975900 0 0 0 28747000 13147000 15600000 1222600 483730 738830 0 0 0 0 0 0 7487 312 7789;7790 37625;37626;37627 37659;37660 37660 147 2 ENASPAPGTTAEEAMSR MEVQGAERASPEPQRENASPAPGTTAEEAM ASPAPGTTAEEAMSRGPPPAPEGGSRDEQD R E N S R G 4 1 1 0 0 0 3 1 0 0 0 0 1 0 2 2 2 0 0 0 0 0 17 0 1717.7577 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;H0Y710 P46379 970 986 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.00018687 47.915 By matching By MS/MS 1 1 0.70657 0.65421 13.455 2 Median 0.59324 0.59483 NaN 1 0 Median 0.84155 0.71951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3965700 2230400 1735300 1318600 956670 361890 2647100 1273700 1373400 0 0 0 0 0 0 0 0 0 0 0 0 7488 8 7791 37628;37629 37661 37661 1 ENAYDLEANLAVLK ENLATLERYVETQAKENAYDLEANLAVLKL KENAYDLEANLAVLKLYQFNPAFFQTTVTA K E N L K L 3 0 2 1 0 0 2 0 0 0 3 1 0 0 0 0 0 0 1 1 0 0 14 0 1561.7988 K7ES31;K7ERF1;Q9UBQ5 K7ES31 39 52 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 2 0.0025579 42.336 By MS/MS By matching 1 1 1.1796 1.0445 13.896 2 Median 1.2345 1.1523 NaN 1 0 Median 1.127 0.94674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18641000 8519700 10121000 13062000 5889800 7171900 5578900 2629800 2949100 0 0 0 0 0 0 0 0 0 0 0 0 7489 1399 7792 37630;37631 37662;37663 37662 2 ENDAVTIQVLNQLIQK LFIEILNRYIYFYEKENDAVTIQVLNQLIQ NDAVTIQVLNQLIQKIREDLPNLESSEETE K E N Q K I 1 0 2 1 0 3 1 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 16 0 1824.9945 Q96QK1 Q96QK1 734 749 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 1.9493E-08 126.19 By matching By MS/MS By matching 1 1 1 1.1386 0.99643 19.828 3 Plateau 1.0363 1.034 NaN 1 0 Median 1.1386 0.99643 NaN 1 0 Median 0.67964 0.72106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27308000 12326000 14982000 1545300 796790 748500 25311000 11230000 14081000 452230 299960 152270 0 0 0 0 0 0 0 0 0 7490 3722 7793 37632;37633;37634 37664;37665 37664 2 ENDIKPLTSFR LYTVKYKDGTELELKENDIKPLTSFRQRKG LELKENDIKPLTSFRQRKGGSTSSSPSRRR K E N F R Q 0 1 1 1 0 0 1 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 11 1 1318.6881 Q14739;A0A494C1L1;C9JXK0 Q14739 51 61 LBR Lamin-B receptor yes no 2;3 0.00022231 90.15 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 6 2 1 0.91482 0.86574 38.472 12 Median 1.3143 1.3543 NaN 1 0 Median 0.9312 0.89689 39.859 3 0 Median 0.69795 0.7952 17.462 6 0 Median NaN NaN NaN 0 0 Median 0.33754 0.35768 NaN 1 0 Median 1.1206 1.0019 NaN 1 0 Median 65662000 35159000 30503000 5385500 2420200 2965300 15809000 7436200 8373200 39794000 22344000 17450000 0 0 0 3777500 2467000 1310500 895110 491900 403210 7491 2897 7794 37635;37636;37637;37638;37639;37640;37641;37642;37643;37644;37645;37646;37647 37666;37667;37668;37669;37670;37671;37672;37673 37669 8 ENDMSPSNNVVPIHVPPTTENKPK EIYRIVSQKQMSDRRENDMSPSNNVVPIHV VVPIHVPPTTENKPKVQCCQNI________ R E N P K V 0 0 4 1 0 0 2 0 1 1 0 2 1 0 5 2 2 0 0 3 0 0 24 1 2643.2963 H3BSC1;P62491;B4DQU5 H3BSC1 168 191 RAB11A Ras-related protein Rab-11A yes no 4 6.7288E-05 33.425 By MS/MS By MS/MS 1 1 0.56229 0.54199 9.478 2 Median 0.49851 0.50686 NaN 1 1 Median 0.63423 0.57956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15799000 10119000 5679500 10214000 6727700 3486300 5585000 3391800 2193200 0 0 0 0 0 0 0 0 0 0 0 0 7492 1233 7795 37648;37649 37674;37675;37676 37675 3 ENDPEANIDTIYDR MNIKDEEAIFITLVKENDPEANIDTIYDRF KENDPEANIDTIYDRFVHLDNLPEDGLQCV K E N D R F 1 1 2 3 0 0 2 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 14 0 1663.7326 Q14966 Q14966 996 1009 ZNF638 Zinc finger protein 638 yes yes 2 6.2255E-07 130.56 By MS/MS By matching By MS/MS By matching 1 2 1 2 0.89884 0.83669 19.63 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73593 0.8021 NaN 1 0 Median 1.1926 1.0496 26.095 2 0 Median 0.83839 0.87972 NaN 1 0 Median 0.89884 0.74926 5.2358 2 0 Median 21129000 11500000 9628800 0 0 0 0 0 0 15900000 8596300 7303300 894700 395560 499140 4028500 2369000 1659500 306150 139300 166850 7493 2903 7796 37650;37651;37652;37653;37654;37655 37677;37678;37679;37680 37678 4 ENDWYLAYK RVEVYKNRAGNKASKENDWYLAYKASPGNL GNKASKENDWYLAYKASPGNLSQFEDILFG K E N Y K A 1 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 2 0 0 0 9 0 1200.5451 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8;C9J809 P43246 114 122 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0702 26.602 By matching By matching By MS/MS 2 1 1 0.9958 0.95877 18.335 4 Median NaN NaN NaN 0 0 Median 1.0039 0.887 30.327 2 0 Median 0.83745 0.92341 NaN 1 0 Median 1.1841 0.99547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8368100 4096600 4271500 0 0 0 1675700 754750 920980 5235500 2646600 2588900 1456900 695280 761630 0 0 0 0 0 0 7494 2324 7797 37656;37657;37658;37659 37681 37681 1 ENDYYTPTGEFR MVRIGGSTDTGKHIKENDYYTPTGEFRVDR HIKENDYYTPTGEFRVDREGSPVLLNCLMY K E N F R V 0 1 1 1 0 0 2 1 0 0 0 0 0 1 1 0 2 0 2 0 0 0 12 0 1490.6314 P46977 P46977 614 625 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 3.2326E-06 123.75 By MS/MS By MS/MS By MS/MS 2 2 1 0.8733 0.87022 11.21 5 Median 0.82191 0.78505 2.8126 2 0 Median 1.1331 0.93678 10.423 2 0 Median 0.8733 0.9441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73522000 37121000 36401000 35735000 19370000 16365000 33445000 15227000 18218000 4341700 2523500 1818200 0 0 0 0 0 0 0 0 0 7495 2352 7798 37660;37661;37662;37663;37664 37682;37683;37684;37685;37686;37687;37688;37689;37690 37683 9 ENEFSFEDNAIR VVTYVGDKDSRAIIRENEFSFEDNAIRGGK IIRENEFSFEDNAIRGGKKASRMKKEASVK R E N I R G 1 1 2 1 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1469.6423 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q8TDI0;K7EMY3;F2Z2R5 Q14839 818 829 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 6.1328E-06 154.81 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1.0376 1.023 19.042 7 Median NaN NaN NaN 0 0 Median 1.4803 1.2459 NaN 1 0 Median 1.0881 1.1854 20.84 2 0 Median 1.1942 1.0507 NaN 1 0 Median 0.98542 1.0137 NaN 1 0 Median 0.97187 0.8269 3.8086 2 0 Median 103570000 48793000 54778000 0 0 0 1984300 747240 1237100 86675000 40819000 45856000 4129700 1736100 2393600 9812500 5045800 4766700 969820 444760 525060 7496 246;3471 7799 37665;37666;37667;37668;37669;37670;37671 37691;37692;37693;37694;37695;37696 37693 6 ENEQSLLEYLEK AGFDSDYDQALADIRENEQSLLEYLEKQRN DIRENEQSLLEYLEKQRNRIGCRTIVYWGI R E N E K Q 0 0 1 0 0 1 4 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 12 0 1493.725 P52701;A0A494C0M1;A0A087WWJ1 P52701 946 957 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0017898 57.492 By MS/MS By MS/MS By MS/MS 1 1 1 0.96115 0.9362 7.0346 2 Median NaN NaN NaN 0 0 Median 1.1196 0.98395 NaN 1 0 Median 0.82511 0.89077 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4501100 2294400 2206600 0 0 0 2158100 1002500 1155600 2343000 1292000 1051000 0 0 0 0 0 0 0 0 0 7497 2453 7800 37672;37673;37674 37697;37698;37699 37699 3 ENEVEEVKEEGPK PEGEEHHPVADTENKENEVEEVKEEGPKEM NKENEVEEVKEEGPKEMTLDEWKAIQNKDR K E N P K E 0 0 1 0 0 0 6 1 0 0 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1514.71 Q8NC51 Q8NC51 274 286 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.00096223 47.559 By matching By MS/MS 1 2 0.92163 0.86881 15.753 3 Median NaN NaN NaN 0 0 Median 0.92163 0.86881 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87469 0.87432 22.272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4217200 2238700 1978500 0 0 0 1079700 652260 427430 0 0 0 3137500 1586400 1551100 0 0 0 0 0 0 7498 3414 7801 37675;37676;37677 37700;37701 37700 2 ENEVLEAWK QAAYAGDKADDIQKRENEVLEAWKSLLDAC DDIQKRENEVLEAWKSLLDACESRRVRLVD R E N W K S 1 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1116.5451 Q01082;A0A087WUZ3 Q01082 1886 1894 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0032184 66.621 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 2 1 2 1.0969 0.9934 16.309 8 Median 1.1911 1.1506 NaN 1 0 Median 0.83755 0.68981 NaN 1 0 Median 0.8912 0.98029 NaN 1 0 Median 1.0697 0.97959 3.8596 2 0 Median 1.1064 1.1596 NaN 1 0 Median 1.1844 1.0066 7.7535 2 0 Median 54606000 28207000 26399000 8022200 3350500 4671600 7868300 5097600 2770700 30692000 16342000 14350000 2075600 923750 1151800 5240500 2155000 3085500 708160 338260 369900 7499 2681 7802 37678;37679;37680;37681;37682;37683;37684;37685 37702;37703;37704;37705;37706 37704 5 ENEVQSLHSK HEAAQQDLQSKFVAKENEVQSLHSKLTDTL KFVAKENEVQSLHSKLTDTLVSKQQLEQRL K E N S K L 0 0 1 0 0 1 2 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1169.5677 Q86UP2 Q86UP2 526 535 KTN1 Kinectin yes yes 2 0.047759 28.727 By MS/MS 1 1.2944 1.1137 NaN 1 Median NaN NaN NaN 0 0 Median 1.2944 1.1137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 765640 277100 488550 0 0 0 765640 277100 488550 0 0 0 0 0 0 0 0 0 0 0 0 7500 3280 7803 37686 37707 37707 1 ENEVSTSATDELLSQFK QEMDIDEILRLAETRENEVSTSATDELLSQ EVSTSATDELLSQFKVANFATMEDEEELEE R E N F K V 1 0 1 1 0 1 3 0 0 0 2 1 0 1 0 3 2 0 0 1 0 0 17 0 1896.8953 O14647;A0A1B0GTU9 O14647 1006 1022 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0011286 38.021 By MS/MS 1 0.93426 0.98788 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93426 0.98788 NaN 1 0 Median NaN NaN NaN 0 0 Median 2333900 1151800 1182100 0 0 0 0 0 0 0 0 0 0 0 0 2333900 1151800 1182100 0 0 0 7501 321 7804 37687 37708;37709 37708 2 ENFQNWLK TTQCRKDVGRPQPGRENFQNWLKDGTVLCE GRPQPGRENFQNWLKDGTVLCELINALYPE R E N L K D 0 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 8 0 1077.5243 P37802;X6RJP6 P37802 50 57 TAGLN2 Transgelin-2 yes no 2 0.0044267 81.635 By MS/MS By matching By MS/MS By matching By matching By matching 3 3 2 1 1 1 1.2061 1.0047 19.551 11 Median 1.0901 0.99684 10.061 3 0 Median 1.1751 0.9806 8.1858 3 0 Median 1.21 1.1693 4.6466 2 0 Median 1.2137 1.0047 NaN 1 0 Median 1.5278 1.8132 NaN 1 0 Median 1.1301 0.95879 NaN 1 0 Median 327960000 144870000 183080000 236410000 105020000 131390000 32648000 14592000 18056000 56373000 24123000 32250000 1895200 856270 1038900 470130 206610 263520 159620 77834 81781 7502 2269 7805 37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698 37710;37711;37712;37713;37714;37715 37711 6 ENFSCLTR TNCLTASKSAPSIPKENFSCLTRLDHNRAK SAPSIPKENFSCLTRLDHNRAKAQIALKLG K E N T R L 0 1 1 0 1 0 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 1025.46 P40925;B9A041;C9JF79;C9JRL4 P40925 150 157 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase yes no 2 0.0044417 81.548 By MS/MS 1 1.3263 1.1029 NaN 1 Median NaN NaN NaN 0 0 Median 1.3263 1.1029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15625000 6327700 9297600 0 0 0 15625000 6327700 9297600 0 0 0 0 0 0 0 0 0 0 0 0 7503 2291 7806 37699 37716;37717 37717 2 ENGELLPILR KGELVGGLDIVKELKENGELLPILRGEN__ VKELKENGELLPILRGEN____________ K E N L R G 0 1 1 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1152.6503 O76003 O76003 323 332 GLRX3 Glutaredoxin-3 yes yes 2 0.037233 31.934 By MS/MS By matching By matching By matching 1 1 1 1 0.88698 0.81119 15.156 4 Median 0.81203 0.81428 NaN 1 0 Median 0.82771 0.72053 NaN 1 0 Median 1.0136 1.0335 NaN 1 0 Median 0.95049 0.8081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8762300 4529300 4233000 2518900 1232500 1286400 5828100 3088900 2739200 313780 152240 161550 101550 55645 45904 0 0 0 0 0 0 7504 1715 7807 37700;37701;37702;37703 37718 37718 1 ENGTMEIYQLPDWR APFRAEPTHWCLLVRENGTMEIYQLPDWRL RENGTMEIYQLPDWRLVFLVKNFPVGQRVL R E N W R L 0 1 1 1 0 1 2 1 0 1 1 0 1 0 1 0 1 1 1 0 0 0 14 0 1750.7985 Q10570 Q10570 790 803 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0019092 45.973 By MS/MS 1 0.82977 0.93157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82977 0.93157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1493800 973130 520650 0 0 0 0 0 0 1493800 973130 520650 0 0 0 0 0 0 0 0 0 7505 2753 7808 37704 37719;37720 37719 2 ENGTVTAANASTLNDGAAALVLMTADAAK VDFSKVPKLKTVFQKENGTVTAANASTLND DGAAALVLMTADAAKRLNVTPLARIVAFAD K E N A K R 9 0 3 2 0 0 1 2 0 0 3 1 1 0 0 1 4 0 0 2 0 0 29 0 2760.36 P24752 P24752 274 302 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 3 0.055583 15.61 By MS/MS 1 0.8785 0.97266 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8785 0.97266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2242300 1375900 866420 0 0 0 0 0 0 2242300 1375900 866420 0 0 0 0 0 0 0 0 0 7506 2126 7809 37705 37721 37721 1 ENGVYLIDVK TEIDQDKYAVRFIPRENGVYLIDVKFNGTH RFIPRENGVYLIDVKFNGTHIPGSPFKIRV R E N V K F 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 10 0 1148.6077 P21333;Q60FE5;A0A087WWY3 P21333 2396 2405 FLNA Filamin-A no no 2 0.0047013 52.278 By MS/MS By MS/MS By matching By matching 3 5 1 3 1.1472 1.0734 100.59 12 Median 1.1598 1.1229 5.5791 3 1 Median 1.0565 0.90494 143.59 5 0 Median 1.7423 1.9402 NaN 1 0 Median 1.2187 1.1046 30.831 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134670000 66472000 68197000 84778000 39325000 45453000 42883000 24298000 18585000 5517600 2150300 3367300 1490500 699850 790610 0 0 0 0 0 0 7507 2088;3120 7810 37706;37707;37708;37709;37710;37711;37712;37713;37714;37715;37716;37717 37722;37723;37724;37725;37726;37727 37724 6 ENIASLMDK LKDPKYVRDSKIRYRENIASLMDKCFPEKN SKIRYRENIASLMDKCFPEKNKPGEIAKYM R E N D K C 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 9 0 1019.4957 Q99986;H0YJ50;H0YJJ9 Q99986 280 288 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0027536 69.825 By MS/MS By MS/MS 1 1 0.93823 0.87552 11.534 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82951 0.80694 NaN 1 0 Median 1.0612 0.94992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12652000 6350900 6301500 0 0 0 0 0 0 8299700 4430400 3869300 4352700 1920600 2432200 0 0 0 0 0 0 7508 3775 7811 37718;37719 37728;37729;37730 37730 3 ENILEEFSK NNRLFVGSIPKNKTKENILEEFSKVTEGLV PKNKTKENILEEFSKVTEGLVDVILYHQPD K E N S K V 0 0 1 0 0 0 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1107.5448 O43390;B4DT28 O43390 260 268 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.0027536 69.825 By matching By MS/MS By matching By MS/MS By matching 1 3 3 6 2 1.1479 1.0197 41.611 15 Median 1.3608 1.3866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0067 0.98293 10.014 3 0 Median 1.2476 1.0692 8.7259 3 0 Median 0.98945 0.97569 60.489 6 0 Median 1.4475 1.1832 21.034 2 0 Median 79475000 39320000 40155000 560200 255420 304780 0 0 0 32135000 16117000 16018000 2965300 1310900 1654400 39658000 19690000 19968000 4155600 1946800 2208800 7509 1568 7812 37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730;37731;37732;37733;37734 37731;37732;37733;37734;37735;37736;37737 37732 7 ENINDEPVDMSAR LRPHGDNRTAGRPGKENINDEPVDMSARRS GKENINDEPVDMSARRSEPERGRLTPSPDI K E N A R R 1 1 2 2 0 0 2 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 13 0 1488.6515 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 98 110 GATAD2B Transcriptional repressor p66-beta yes no 2 3.4687E-05 91.549 By MS/MS By MS/MS 1 1 0.82824 0.7764 13.056 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80888 0.85149 NaN 1 0 Median 0.84806 0.70794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5702400 3685100 2017300 0 0 0 0 0 0 4187700 2721900 1465800 1514700 963200 551490 0 0 0 0 0 0 7510 311 7813 37735;37736 37738;37739;37740 37738 3 ENIQDLVFR REDSPAMALLLQQFKENIQDLVFRTKTGKQ LLQQFKENIQDLVFRTKTGKQTRTNAKRKL K E N F R T 0 1 1 1 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1132.5877 O60244 O60244 593 601 MED14 Mediator of RNA polymerase II transcription subunit 14 yes yes 2 0.027065 51.346 By MS/MS 1 1.0446 1.1624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0446 1.1624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2141900 1214700 927220 0 0 0 0 0 0 2141900 1214700 927220 0 0 0 0 0 0 0 0 0 7511 1606 7814 37737 37741 37741 1 ENISEWR VDNLYAEPAVLKWIRENISEWRNCTIVSPD PAVLKWIRENISEWRNCTIVSPDAGGAKRV R E N W R N 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 7 0 932.43519 B1ALA9;P60891;A0A2R8Y7H4 B1ALA9 124 130 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.015644 70.912 By matching By MS/MS 2 2 1.154 1.0135 13.461 4 Median 1.0489 0.98846 19.963 2 0 Median 1.2049 1.0135 11.782 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22439000 10556000 11883000 14822000 7227100 7594800 7616700 3328800 4287800 0 0 0 0 0 0 0 0 0 0 0 0 7512 571 7815 37738;37739;37740;37741 37742;37743 37742 2 ENISNAQALLEYHLSYLQEVEQLR PREEGMVPFIFVGTRENISNAQALLEYHLS LEYHLSYLQEVEQLRLERLQIDEQLRQIGL R E N L R L 2 1 2 0 0 3 4 0 1 1 5 0 0 0 0 2 0 0 2 1 0 0 24 0 2859.4403 P51116 P51116 352 375 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 6.972E-05 30.306 By matching By MS/MS 1 2 0.8013 0.69424 21.332 3 Median 0.50281 0.48912 NaN 1 0 Median 0.80475 0.70682 2.5402 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4975200 2546700 2428500 378220 196390 181830 4597000 2350300 2246700 0 0 0 0 0 0 0 0 0 0 0 0 7513 2426 7816 37742;37743;37744 37744 37744 1 ENIVEAIIHSPELIR ISPYTIPEEDRHCIRENIVEAIIHSPELIR ENIVEAIIHSPELIRVQLTTCIHHIIKHDY R E N I R V 1 1 1 0 0 0 3 0 1 4 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1731.9519 O95373;E9PLB2 O95373 93 107 IPO7 Importin-7 yes no 2 9.5725E-08 128.67 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0467 0.99092 6.0949 4 Median 1.0436 1.0228 NaN 1 0 Median 1.0499 0.90737 NaN 1 0 Median 0.90027 0.96006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3428 1.0349 NaN 1 0 Median 10392000 5096300 5295300 2575800 1381400 1194400 6878600 3258100 3620500 405170 236180 168990 0 0 0 0 0 0 531920 220550 311370 7514 1768 7817 37745;37746;37747;37748 37745;37746;37747;37748 37748 4 ENIVNSFTDK KLSVHKSQQNDCANKENIVNSFTDKQQTPE DCANKENIVNSFTDKQQTPEKLPIPMIAKN K E N D K Q 0 0 2 1 0 0 1 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 10 0 1165.5615 Q96GX5;A0A087WUU7 Q96GX5 507 516 MASTL Serine/threonine-protein kinase greatwall yes no 2 0.052592 27.254 By MS/MS 1 1.4022 1.3483 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4022 1.3483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2158000 728450 1429600 0 0 0 0 0 0 2158000 728450 1429600 0 0 0 0 0 0 0 0 0 7515 3662 7818 37749 37749 37749 1 ENLATVEGNFASIDER KDNTTLLTQVQTTMRENLATVEGNFASIDE NLATVEGNFASIDERMKKLGK_________ R E N E R M 2 1 2 1 0 0 3 1 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 0 1763.8326 Q13561;H0YI98 Q13561 380 395 DCTN2 Dynactin subunit 2 yes no 2 1.3783E-08 124.86 By matching By MS/MS By matching By matching 1 1 1 1 1.1713 1.0647 15.888 4 Median NaN NaN NaN 0 0 Median 1.3296 1.1196 NaN 1 0 Median 1.0319 1.0124 NaN 1 0 Median 1.3975 1.2156 NaN 1 0 Median 0.83499 0.84074 NaN 1 0 Median NaN NaN NaN 0 0 Median 30907000 13606000 17301000 0 0 0 8646700 3738300 4908400 17889000 7999800 9889400 2714700 1100500 1614300 1656100 766990 889110 0 0 0 7516 2824 7819 37750;37751;37752;37753 37750;37751 37751 2 ENLEEEAIIMK LLQAETDRRTLQMLRENLEEEAIIMKDVPD QMLRENLEEEAIIMKDVPDWKVGESVFHTT R E N M K D 1 0 1 0 0 0 4 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1317.6486 Q9P0J0;B4DEZ3;K7EJE1;E7ENQ6 Q9P0J0 89 99 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 2 0.00015781 81.972 By MS/MS By matching By matching 2 2 2 0.83824 0.797 44.084 6 Median 0.69749 0.65875 35.749 2 0 Median 1.7834 1.5391 7.3524 2 0 Median 0.77299 0.74751 0.2603 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32999000 16871000 16128000 18162000 9745900 8415600 1026700 336800 689890 13811000 6787800 7022800 0 0 0 0 0 0 0 0 0 7517 4203 7820;7821 37754;37755;37756;37757;37758;37759 37752;37753;37754 37753 1899 3 ENLFMDLLR AVQHCLALLNLTLQKENLFMDLLRESQLAL NLTLQKENLFMDLLRESQLALIVCPLEQLL K E N L R E 0 1 1 1 0 0 1 0 0 0 3 0 1 1 0 0 0 0 0 0 0 0 9 0 1149.5852 Q92621 Q92621 860 868 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.039605 33.797 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.2299 1.1792 7.7819 6 Median 1.0193 1.0118 NaN 1 0 Median 1.4353 1.1998 NaN 1 0 Median 1.0563 1.1591 NaN 1 0 Median 1.3646 1.2 NaN 1 0 Median 1.1086 1.1563 NaN 1 0 Median 1.5123 1.278 NaN 1 0 Median 9450100 4422100 5028000 427440 191380 236050 1170600 468140 702470 6887200 3338500 3548700 653840 275190 378660 242350 122180 120180 68576 26644 41932 7518 3547 7822 37760;37761;37762;37763;37764;37765 37755 37755 1 ENLIAELEEK KAAVKEFEDKKVELKENLIAELEEKKKMIE KVELKENLIAELEEKKKMIENEKLTMELTG K E N E K K 1 0 1 0 0 0 4 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1186.6081 Q9H7L9 Q9H7L9 148 157 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 2 0.00064301 72.607 By MS/MS By matching 1 1 0.93173 0.86592 4.7319 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86501 0.83743 NaN 1 0 Median 1.0036 0.89538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11891000 6206200 5685200 0 0 0 0 0 0 11226000 5884300 5341900 665090 321850 343240 0 0 0 0 0 0 7519 3982 7823 37766;37767 37756;37757 37757 2 ENLISALEEAK VVTHGGRVLAVTAIRENLISALEEAKKGLA TAIRENLISALEEAKKGLAAIKFEGAIYRK R E N A K K 2 0 1 0 0 0 3 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1215.6347 P22102 P22102 394 404 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.00022988 83.869 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7520 2098 7824 37768 37758 37758 1 ENLLDFIK KFDEGRNNFEGEVTKENLLDFIKHNQLPLV FEGEVTKENLLDFIKHNQLPLVIEFTEQTA K E N I K H 0 0 1 1 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 990.5386 P07237;H7BZ94;H0Y3Z3;I3L398;I3L312;I3L4M2;I3NI03 P07237 223 230 P4HB Protein disulfide-isomerase yes no 1 0.035607 76.221 By MS/MS 2 1.0349 0.88681 13.3 2 Median NaN NaN NaN 0 0 Median 1.0349 0.88681 13.3 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7917100 3699500 4217700 0 0 0 7917100 3699500 4217700 0 0 0 0 0 0 0 0 0 0 0 0 7521 1883 7825 37769;37770 37759 37759 0 ENLLEEQGSIALR AAYVKKLDPAQSASRENLLEEQGSIALRQE SRENLLEEQGSIALRQEQIDNQTRITKEAG R E N L R Q 1 1 1 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1470.7678 A0A0D9SF54;Q13813 Q13813 1033 1045 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 4.1506E-30 166.55 By MS/MS By MS/MS By MS/MS 2 4 1 0.96533 0.9782 33.222 7 Median NaN NaN NaN 0 0 Median 0.89847 0.75912 35.857 2 0 Median 0.95934 1.0457 40.266 4 2 Median 1.1128 0.97668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83837000 41438000 42399000 0 0 0 15594000 6776400 8817400 66745000 33990000 32755000 1498200 671610 826640 0 0 0 0 0 0 7522 264;2838 7826 37771;37772;37773;37774;37775;37776;37777 37760;37761;37762;37763;37764;37765;37766;37767 37763 8 ENLLEEQGSIALRQEQIDNQTR AAYVKKLDPAQSASRENLLEEQGSIALRQE GSIALRQEQIDNQTRITKEAGSVSLRMKQV R E N T R I 1 2 2 1 0 4 4 1 0 2 3 0 0 0 0 1 1 0 0 0 0 0 22 1 2583.2889 Q13813 Q13813 1033 1054 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00026298 27.523 By MS/MS By matching 2 1 1.5302 1.6364 9.6965 3 Plateau 1.5204 1.639 0.22869 2 0 Median NaN NaN NaN 0 0 Median 1.1393 1.3857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18943000 7387000 11556000 14001000 5178600 8822500 0 0 0 4942100 2208400 2733700 0 0 0 0 0 0 0 0 0 7523 2838 7827 37778;37779;37780 37768 37768 1 ENLLTYLPDSLTQLR ENIGNLYNLASLELRENLLTYLPDSLTQLR ENLLTYLPDSLTQLRRLEELDLGNNEIYNL R E N L R R 0 1 1 1 0 1 1 0 0 0 5 0 0 0 1 1 2 0 1 0 0 0 15 0 1774.9465 Q9BTT6 Q9BTT6 160 174 LRRC1 Leucine-rich repeat-containing protein 1 yes yes 2 0.049451 23.236 By MS/MS 1 0.89044 0.89775 NaN 1 Median 0.89044 0.89775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 740880 344650 396220 740880 344650 396220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7524 3829 7828 37781 37769 37769 1 ENLTDLVVDTDTLGESTQPQR GPPVAQVEQDLPISRENLTDLVVDTDTLGE VVDTDTLGESTQPQREGAQVPTGREREQHV R E N Q R E 0 1 1 3 0 2 2 1 0 0 3 0 0 0 1 1 4 0 0 2 0 0 21 0 2330.1238 Q14676 Q14676 643 663 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 1.1558E-26 156.24 By matching By MS/MS By matching 1 5 3 0.9232 0.93771 7.6451 9 Median NaN NaN NaN 0 0 Median 0.97469 0.98428 NaN 1 0 Median 0.86066 0.93801 5.0792 5 0 Median 1.0266 0.89819 10.087 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27888000 14763000 13125000 0 0 0 542510 306880 235620 26512000 14031000 12482000 832770 425340 407420 0 0 0 0 0 0 7525 2887 7829 37782;37783;37784;37785;37786;37787;37788;37789;37790 37770;37771;37772;37773;37774;37775;37776 37773 7 ENLTELSGGQR LDGLEFKVALGNTWKENLTELSGGQRSLVA NTWKENLTELSGGQRSLVALSLILSMLLFK K E N Q R S 0 1 1 0 0 1 2 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1202.5891 O95347;A0A0C4DGE5 O95347 1080 1090 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.00016513 81.338 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1442 1.0398 34.132 4 Median 1.1641 1.1325 NaN 1 1 Median 0.93375 0.77638 NaN 1 0 Median 1.5793 1.734 NaN 1 1 Median 1.1247 0.95459 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31096000 14443000 16653000 3208700 1425700 1783100 18882000 8275200 10607000 3072700 1309500 1763200 5932000 3432400 2499600 0 0 0 0 0 0 7526 1766 7830 37791;37792;37793;37794 37777;37778;37779;37780;37781 37780 5 ENLVRPGIDHLGR LDGRDHFGRPPVDIRENLVRPGIDHLGRRD IRENLVRPGIDHLGRRDHFGFNPEKPWGHR R E N G R R 0 2 1 1 0 0 1 2 1 1 2 0 0 0 1 0 0 0 0 1 0 0 13 1 1474.8005 A0A0A0MT33;Q9UPN6 A0A0A0MT33 1147 1159 SCAF8 Protein SCAF8 yes no 3 0.00062421 64.65 By MS/MS 2 0.9318 1.1333 3.5268 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9318 1.1333 3.5268 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14532000 7369300 7162300 0 0 0 0 0 0 14532000 7369300 7162300 0 0 0 0 0 0 0 0 0 7527 186 7831 37795;37796 37782;37783 37782 2 ENMEAISPLK GPTYYIDTNALRVPRENMEAISPLKNGMVE LRVPRENMEAISPLKNGMVEDWDSFQAILD R E N L K N 1 0 1 0 0 0 2 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 10 0 1130.5642 O96019;H7C5S0;C9JQT2 O96019 80 89 ACTL6A Actin-like protein 6A yes no 2 0.00036469 101.65 By MS/MS By MS/MS By MS/MS 3 2 1 0.82451 0.82845 35.941 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81629 0.79536 6.8575 3 0 Median 1.0997 0.99099 9.5216 2 0 Median 0.39973 0.38076 NaN 1 1 Median NaN NaN NaN 0 0 Median 137890000 69819000 68071000 0 0 0 0 0 0 68985000 37252000 31733000 64277000 29144000 35133000 4627900 3422600 1205200 0 0 0 7528 1809 7832;7833 37797;37798;37799;37800;37801;37802 37784;37785;37786;37787;37788;37789;37790;37791;37792;37793 37787 579 10 ENMKLPQPPEGQTYNN IKVVLQELRRLMMSKENMKLPQPPEGQTYN NMKLPQPPEGQTYNN_______________ K E N N N - 0 0 3 0 0 2 2 1 0 0 1 1 1 0 3 0 1 0 1 0 0 0 16 1 1858.852 Q15819;G3V113;H0YBP9 Q15819 130 145 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes no 2 0.01336 48.741 By MS/MS 1 0.68079 0.64392 NaN 1 Median 0.68079 0.64392 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3422200 2099600 1322500 3422200 2099600 1322500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7529 2973 7834 37803 37794 37794 1 ENMTLQPK VNALIENPTFDSQTKENMTLQPKSFGSTCQ TFDSQTKENMTLQPKSFGSTCQLSEKFIKA K E N P K S 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 8 0 959.47462 P11388;Q02880;E9PCY5 P11388 379 386 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.047416 35.295 By matching By matching By MS/MS By matching 1 1 1 1 1.0581 1.028 22.457 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72639 0.80753 NaN 1 0 Median 1.1441 1.0301 NaN 1 0 Median 0.97859 1.0259 NaN 1 0 Median 1.6393 1.397 NaN 1 0 Median 7705700 3849900 3855800 0 0 0 0 0 0 1883800 1114800 769060 358520 134870 223650 5024900 2398200 2626800 438430 202110 236330 7530 1963;2704 7835 37804;37805;37806;37807 37795 37795 1 ENNIMITLETNIEHNLK EDQETVDINSVSEGKENNIMITLETNIEHN NIMITLETNIEHNLKSEEEKDQEKQQMFEN K E N L K S 0 0 4 0 0 0 3 0 1 3 2 1 1 0 0 0 2 0 0 0 0 0 17 0 2025.0201 Q9H2G2 Q9H2G2 452 468 SLK STE20-like serine/threonine-protein kinase yes yes 3 0.022516 27.149 By MS/MS 1 0.2791 0.24735 NaN 1 Median NaN NaN NaN 0 0 Median 0.2791 0.24735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8627000 6572200 2054800 0 0 0 8627000 6572200 2054800 0 0 0 0 0 0 0 0 0 0 0 0 7531 3942 7836 37808 37796 37796 1 ENNVVFNR LHKDSKWYQQWKDFKENNVVFNRFFEMKMK QQWKDFKENNVVFNRFFEMKMKYDESDNAF K E N N R F 0 1 3 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 990.48829 O43615;M0QXU7 O43615 250 257 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.064877 47.067 By MS/MS 1 4.2112 3.6438 NaN 1 Median NaN NaN NaN 0 0 Median 4.2112 3.6438 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3524400 510470 3014000 0 0 0 3524400 510470 3014000 0 0 0 0 0 0 0 0 0 0 0 0 7532 1577 7837 37809 37797 37797 1 ENPEEDEDQRNPAK GEEKMSLRNRLSKSRENPEEDEDQRNPAKE RENPEEDEDQRNPAKESLETPSNGRIDIKQ R E N A K E 1 1 2 2 0 1 4 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 14 1 1669.718 P35610;B1APM4 P35610 18 31 SOAT1 Sterol O-acyltransferase 1 yes no 3 0.067975 11.793 By MS/MS 1 0.74348 0.73019 NaN 1 Median NaN NaN NaN 0 0 Median 0.74348 0.73019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 587000 400150 186850 0 0 0 587000 400150 186850 0 0 0 0 0 0 0 0 0 0 0 0 7533 2247 7838 37810 37798 37798 1 ENPFQNLK GYSLEEQRILDWQPRENPFQNLKVLLVSDQ ILDWQPRENPFQNLKVLLVSDQQQNFLELW R E N L K V 0 0 2 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 8 0 988.49779 A6NNK5;Q12888 A6NNK5 1821 1828 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0066726 70.268 By MS/MS By matching By matching 1 1 1 0.90947 0.8249 26.767 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55635 0.61951 NaN 1 0 Median 0.90947 0.8249 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1546 1.0577 NaN 1 0 Median 17008000 8821900 8186500 0 0 0 0 0 0 5584900 3617200 1967700 632370 280570 351800 0 0 0 10791000 4924100 5866900 7534 530 7839 37811;37812;37813 37799 37799 1 ENPGFDFSGAEISGNYTK QDQMQRKLTLERFQKENPGFDFSGAEISGN GFDFSGAEISGNYTKGGPDFSNLEK_____ K E N T K G 1 0 2 1 0 0 2 3 0 1 0 1 0 2 1 2 1 0 1 0 0 0 18 0 1931.8537 E5RFP0;Q8WVJ2 E5RFP0 105 122 NUDCD2 NudC domain-containing protein 2 yes no 2 3.807E-05 49.929 By MS/MS By MS/MS 1 1 0.99658 0.90136 9.4681 2 Median 0.89163 0.84299 NaN 1 0 Median 1.1139 0.96378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6102100 2980100 3122000 4312800 2157400 2155400 1789300 822700 966580 0 0 0 0 0 0 0 0 0 0 0 0 7535 836 7840 37814;37815 37800;37801;37802 37801 3 ENPGLTQDIIMK SAAQTLRAAFIKAEKENPGLTQDIIMKILE AEKENPGLTQDIIMKILEKKSVEVNFTESL K E N M K I 0 0 1 1 0 1 1 1 0 2 1 1 1 0 1 0 1 0 0 0 0 0 12 0 1357.6912 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J932 Q9BUL8 54 65 PDCD10 Programmed cell death protein 10 yes no 2 3.2326E-06 109.42 By MS/MS By matching By MS/MS 1 1 1 0.81234 0.7661 11.169 3 Median 0.77684 0.72226 NaN 1 0 Median 1.0527 0.89645 NaN 1 0 Median 0.81234 0.7661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24926000 13754000 11171000 17901000 10245000 7656500 1471400 695820 775620 5552600 2813700 2739000 0 0 0 0 0 0 0 0 0 7536 3841 7841 37816;37817;37818 37803;37804;37805 37803 3 ENPHATSNSIFINWK GSSRLRESEGLQEQKENPHATSNSIFINWK ENPHATSNSIFINWKEHANDQQHIQVYENG K E N W K E 1 0 3 0 0 0 1 0 1 2 0 1 0 1 1 2 1 1 0 0 0 0 15 0 1756.8533 Q9NXF1 Q9NXF1 256 270 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.057567 10.787 By MS/MS 2 0.76101 0.83995 0 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76101 0.83995 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9851200 6269100 3582100 0 0 0 0 0 0 9851200 6269100 3582100 0 0 0 0 0 0 0 0 0 7537 4163 7842 37819;37820 37806 37806 1 ENPLLPEEEEQR EFENRTRNVDVYDKRENPLLPEEEEQRAIA DKRENPLLPEEEEQRAIAKIKMLGNIKFIG R E N Q R A 0 1 1 0 0 1 5 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 12 0 1481.6998 P78344;D3DQV9;H0Y3P2;H0YCH5;H0YD77;H0YEC5 P78344 189 200 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00039479 79.974 By MS/MS By matching 1 1 0.6155 0.55989 54.697 2 Median 0.85264 0.82427 NaN 1 0 Median 0.44432 0.3803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17094000 12305000 4789700 5928100 3013700 2914400 11166000 9290800 1875400 0 0 0 0 0 0 0 0 0 0 0 0 7538 2639 7843 37821;37822 37807;37808 37808 2 ENPLQFK WLKLDKKVSAQEVRKENPLQFKFRAKFYPE VSAQEVRKENPLQFKFRAKFYPEDVAEELI K E N F K F 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 7 0 874.45487 P15311;E7EQR4;E9PQ82;P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3;A0A2R8Y5P0 P15311 73 79 EZR;RDX Ezrin;Radixin no no 2 0.031889 49.058 By MS/MS By MS/MS By MS/MS 1 1 1 1.0799 0.94108 14.507 3 Median 0.87545 0.81458 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0799 1.0888 NaN 1 0 Median 1.085 0.94108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21869000 11576000 10293000 5965600 3158800 2806800 0 0 0 13568000 7266500 6301800 2335100 1150900 1184200 0 0 0 0 0 0 7539 879;2235 7844 37823;37824;37825 37809;37810;37811;37812;37813 37812 5 ENPPVEDSSDEDDKR FSNVFEHYLGDDMKRENPPVEDSSDEDDKR ENPPVEDSSDEDDKRNQGNLYDKAGKVRKH R E N K R N 0 1 1 4 0 0 3 0 0 0 0 1 0 0 2 2 0 0 0 1 0 0 15 1 1730.7231 Q8TCJ2 Q8TCJ2 491 505 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 3 4.6776E-08 97.836 By MS/MS By MS/MS By matching By matching 2 2 2 3 0.84288 0.8137 10.385 9 Median 0.67616 0.68636 5.7459 2 0 Median 0.87306 0.83103 1.0637 2 0 Median 0.64542 0.75422 3.7722 2 0 Median 0.92242 0.88646 5.6165 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7102000 3881800 3220300 871400 503780 367620 4509000 2372200 2136800 1020100 654610 365470 701540 351140 350400 0 0 0 0 0 0 7540 3466 7845 37826;37827;37828;37829;37830;37831;37832;37833;37834 37814;37815;37816;37817 37816 4 ENPPVEDSSDEDDKRNQGNLYDK FSNVFEHYLGDDMKRENPPVEDSSDEDDKR SDEDDKRNQGNLYDKAGKVRKHATEQEKTE R E N D K A 0 1 3 5 0 1 3 1 0 0 1 2 0 0 2 2 0 0 1 1 0 0 23 2 2663.1583 Q8TCJ2 Q8TCJ2 491 513 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 4 0.033251 12.554 By matching By MS/MS 1 2 0.63947 0.81818 9.7525 3 Median 0.64861 0.70584 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6293 0.83325 2.581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8000400 4689600 3310700 2549400 1555400 993980 0 0 0 5451000 3134300 2316700 0 0 0 0 0 0 0 0 0 7541 3466 7846 37835;37836;37837 37818 37818 1 ENPSEEAQNLVEFTDEEGYGR CVPMSVEFEELLKARENPSEEAQNLVEFTD AQNLVEFTDEEGYGRYLDLHDCYLKYINLK R E N G R Y 1 1 2 1 0 1 6 2 0 0 1 0 0 1 1 1 1 0 1 1 0 0 21 0 2412.0353 Q12874 Q12874 118 138 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 4.7282E-09 57.679 By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 0.80337 0.76321 10.214 8 Median 0.93679 0.94999 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73834 0.76321 2.9771 2 0 Median 0.89928 0.7894 9.4845 3 0 Median 0.71395 0.71933 1.6131 2 0 Median NaN NaN NaN 0 0 Median 14505000 7917000 6587800 1074800 542740 532080 0 0 0 9415000 5197000 4217900 608890 318240 290650 3406200 1859000 1547200 0 0 0 7542 2767 7847 37838;37839;37840;37841;37842;37843;37844;37845 37819;37820;37821;37822;37823;37824;37825;37826;37827 37824 9 ENPVYEK DMMEEMYKKAHAAIRENPVYEKKPKKEVKK KKAHAAIRENPVYEKKPKKEVKKKRWNRPK R E N E K K 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 7 0 877.41815 A0A2R8Y6J3;P46777;A0A2R8Y4A2 A0A2R8Y6J3 199 205 RPL5 60S ribosomal protein L5 yes no 2 0.030683 49.65 By matching By MS/MS By matching By matching 1 1 1 1 1.0222 0.90336 11.24 4 Median 0.96533 0.94005 NaN 1 0 Median 0.98549 0.83046 NaN 1 0 Median 1.0968 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0602 0.8681 NaN 1 0 Median 6346200 3242700 3103500 2787500 1441700 1345800 2636500 1329600 1307000 646000 322010 323990 0 0 0 0 0 0 276180 149440 126740 7543 375 7848 37846;37847;37848;37849 37828 37828 1 ENPYGEDDNKSPFPLQPK WLGKMAQLGPISDAKENPYGEDDNKSPFPL YGEDDNKSPFPLQPKNKRSYAQNVTVWIKP K E N P K N 0 0 2 2 0 1 2 1 0 0 1 2 0 1 4 1 0 0 1 0 0 0 18 1 2073.9643 H3BRY6;B4DVT3;B4DJL6;Q96SY0 H3BRY6 327 344 VWA9 von Willebrand factor A domain-containing protein 9 yes no 3 0.038814 13.427 By MS/MS By matching 1 1 0.54117 0.55368 11.579 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48716 0.51015 NaN 1 0 Median 0.60118 0.60092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6265900 4203000 2062900 0 0 0 0 0 0 4931500 3328900 1602600 1334300 874040 460280 0 0 0 0 0 0 7544 593 7849 37850;37851 37829 37829 1 ENPYYDSR KIYIDSNNNPERFLRENPYYDSRVVGKYCE NPERFLRENPYYDSRVVGKYCEKRDPHLAC R E N S R V 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 8 0 1042.4356 A0A087WVQ6;Q00610 A0A087WVQ6 900 907 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0034992 92.491 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 2 1 1.105 0.9568 9.17 13 Median 1.1123 1.0844 11.756 2 0 Median 1.1523 0.9568 3.1524 3 0 Median 0.78818 0.86494 4.657 3 0 Median 1.1624 1.0162 8.2656 2 0 Median 0.84786 0.89456 0.47272 2 0 Median 1.1986 1.0033 NaN 1 0 Median 80332000 38909000 41422000 15223000 6991300 8231700 34206000 15830000 18375000 16297000 8962900 7334400 6708300 3106100 3602200 6860700 3492600 3368000 1036600 525990 510650 7545 44 7850 37852;37853;37854;37855;37856;37857;37858;37859;37860;37861;37862;37863;37864 37830;37831;37832;37833;37834;37835;37836;37837;37838;37839;37840;37841;37842;37843;37844;37845;37846;37847 37835 18 ENQAFSFLYEPNSQGYK DGGPEVETIALQNNRENQAFSFLYEPNSQG QAFSFLYEPNSQGYKYYRQKLEEFRKAKAS R E N Y K Y 1 0 2 0 0 2 2 1 0 0 1 1 0 2 1 2 0 0 2 0 0 0 17 0 2020.9167 Q8IWZ8 Q8IWZ8 291 307 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 2 3.1062E-05 52.928 By MS/MS 1 0.76838 0.81704 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76838 0.81704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3700100 1932200 1767900 0 0 0 0 0 0 3700100 1932200 1767900 0 0 0 0 0 0 0 0 0 7546 3330 7851 37865 37848 37848 1 ENQGPAPQGMIMGHPPQEMR MGLNPRGMQGPPGPRENQGPAPQGMIMGHP APQGMIMGHPPQEMRGPHPPGGLLGHGPQE R E N M R G 1 1 1 0 0 3 2 3 1 1 0 0 3 0 4 0 0 0 0 0 0 0 20 0 2203.9925 Q9C0J8 Q9C0J8 792 811 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 2.6446E-08 69.763 By MS/MS 1 0.45529 0.50042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45529 0.50042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29193000 20615000 8578500 0 0 0 0 0 0 29193000 20615000 8578500 0 0 0 0 0 0 0 0 0 7547 3907 7852 37866 37849 37849 1 ENQIDPPVVAR NVMYFGGNSDASTIKENQIDPPVVARYIRI STIKENQIDPPVVARYIRISPTGSYNKPAL K E N A R Y 1 1 1 1 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1236.6463 CON__Q28107 CON__Q28107 2016 2026 yes yes 2 0.031286 48.423 By MS/MS 1 0.18539 0.1853 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18539 0.1853 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1478800 1248100 230680 0 0 0 0 0 0 1478800 1248100 230680 0 0 0 0 0 0 0 0 0 + 7548 772 7853 37867 37850 37850 1 ENQTAVDVFR LAESWNAAFLESSAKENQTAVDVFRRIILE ESSAKENQTAVDVFRRIILEAEKMDGAASQ K E N F R R 1 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 10 0 1177.5728 Q15382;C9J931 Q15382 152 161 RHEB GTP-binding protein Rheb yes no 2 0.00036244 87.308 By MS/MS By MS/MS 1 1 0.4744 0.42653 110.26 2 Median 0.95342 0.93015 NaN 1 0 Median 0.23606 0.19559 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24927000 18913000 6013900 8431500 4168900 4262700 16496000 14745000 1751300 0 0 0 0 0 0 0 0 0 0 0 0 7549 2943 7854 37868;37869 37851;37852 37851 2 ENQTAVDVFRR LAESWNAAFLESSAKENQTAVDVFRRIILE SSAKENQTAVDVFRRIILEAEKMDGAASQG K E N R R I 1 2 1 1 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 11 1 1333.6739 Q15382;C9J931 Q15382 152 162 RHEB GTP-binding protein Rheb yes no 2;3 0.01237 40.002 By MS/MS By matching 2 1 1.1244 1.0286 24.795 3 Median 1.209 1.2673 30.649 2 0 Median 1.1244 1.0286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7282100 2843600 4438500 6202400 2198000 4004400 1079700 645660 434020 0 0 0 0 0 0 0 0 0 0 0 0 7550 2943 7855 37870;37871;37872 37853;37854 37853 2 ENQWFDVGVIK KPDLPPPPSKAPMKKENQWFDVGVIKGTNV PMKKENQWFDVGVIKGTNVMVTHYFLPPDD K E N I K G 0 0 1 1 0 1 1 1 0 1 0 1 0 1 0 0 0 1 0 2 0 0 11 0 1333.6667 A6NEM2;P51610;H7C1C4 A6NEM2 1854 1864 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.00018232 77.677 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 0.98245 0.94384 11.673 6 Median NaN NaN NaN 0 0 Median 1.0971 0.97332 NaN 1 0 Median 0.87979 0.96041 16.98 3 0 Median 1.1055 0.92755 NaN 1 0 Median 0.85751 0.88493 NaN 1 0 Median NaN NaN NaN 0 0 Median 26876000 13943000 12933000 0 0 0 1685400 752340 933020 21595000 11287000 10307000 1243900 580300 663600 2351800 1322800 1029100 0 0 0 7551 509;2438 7856 37873;37874;37875;37876;37877;37878 37855;37856;37857;37858;37859;37860;37861;37862;37863 37857 9 ENSASQISQLEQQLSAK VEDVQRLQASLTKLRENSASQISQLEQQLS SASQISQLEQQLSAKNSTLKQLEEKLKGQA R E N A K N 2 0 1 0 0 4 2 0 0 1 2 1 0 0 0 4 0 0 0 0 0 0 17 0 1859.9225 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 329 345 CUX1 Protein CASP no no 2 0.049709 21.23 By MS/MS By matching 1 1 0.91064 0.91046 8.7333 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77141 0.85593 NaN 1 0 Median 1.075 0.96845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1922100 1066200 855880 0 0 0 0 0 0 1542100 884900 657200 379990 181320 198670 0 0 0 0 0 0 7552 388;2847 7857 37879;37880 37864 37864 1 ENTAYFQFFSDAR QWMKQLCLCVEQHVKENTAYFQFFSDAREL VKENTAYFQFFSDARELESFLRNLQDSIKR K E N A R E 2 1 1 1 0 1 1 0 0 0 0 0 0 3 0 1 1 0 1 0 0 0 13 0 1594.7052 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 779 791 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00049168 72.2 By MS/MS By matching 1 1 0.94365 0.88505 8.5634 2 Median 0.82092 0.83305 NaN 1 0 Median 1.0847 0.9403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2888400 1656900 1231500 2545600 1492400 1053300 342720 164550 178170 0 0 0 0 0 0 0 0 0 0 0 0 7553 1220 7858 37881;37882 37865 37865 1 ENTEGEYSGIEHVIVDGVVQSIK GYKTPYTDVNIVTIRENTEGEYSGIEHVIV GIEHVIVDGVVQSIKLITEGASKRIAEFAF R E N I K L 0 0 1 1 0 1 4 3 1 3 0 1 0 0 0 2 1 0 1 4 0 0 23 0 2501.2286 P50213;H0YL72;H0YLI6;H0YMU3 P50213 147 169 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 3 1.2498E-08 49.902 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.0677 1.0469 45.979 5 Median 1.0677 1.0469 NaN 1 0 Median 1.2423 1.0713 NaN 1 0 Median 1.0393 1.0057 NaN 1 0 Median 0.46532 0.3976 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5118 1.2597 NaN 1 0 Median 4998800 2324000 2674700 496190 232800 263390 2336700 1076300 1260400 1562400 771220 791160 206650 100090 106560 0 0 0 396910 143660 253240 7554 2409 7859 37883;37884;37885;37886;37887 37866 37866 1 ENTEGEYSSLEHESVAGVVESLK GVVTRHKDIDILIVRENTEGEYSSLEHESV SLEHESVAGVVESLKIITKAKSLRIAEYAF R E N L K I 1 0 1 0 0 0 6 2 1 0 2 1 0 0 0 4 1 0 1 3 0 0 23 0 2492.1555 H7C1W2;E9PF84;G5E9Q7;E7EQB8;P51553 H7C1W2 108 130 IDH3G Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 3 6.9171E-05 32.702 By MS/MS By matching By matching 1 1 1 0.82279 0.88127 15.019 3 Median 0.81142 0.7579 NaN 1 0 Median 1.1868 1.0234 NaN 1 0 Median 0.82279 0.88127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12141000 6224700 5916700 5849600 3146300 2703300 2442300 1047400 1394900 3849600 2031000 1818500 0 0 0 0 0 0 0 0 0 7555 877 7860 37888;37889;37890 37867;37868 37868 2 ENTKEGLAELYEYK VNDFLAEIFKKIGSKENTKEGLAELYEYKK KENTKEGLAELYEYKKKYSDADIEPFLKNS K E N Y K K 1 0 1 0 0 0 4 1 0 0 2 2 0 0 0 0 1 0 2 0 0 0 14 1 1685.8148 Q14008;H0YDX5 Q14008 1844 1857 CKAP5 Cytoskeleton-associated protein 5 yes no 3 0.0063948 27.335 By MS/MS 1 1.4656 1.6927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4656 1.6927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5900300 2467000 3433400 0 0 0 0 0 0 5900300 2467000 3433400 0 0 0 0 0 0 0 0 0 7556 2850 7861 37891 37869;37870 37869 2 ENVATTDTLESTTVGTSV KEVLLFPAMKPEDKKENVATTDTLESTTVG ATTDTLESTTVGTSV_______________ K E N S V - 1 0 1 1 0 0 2 1 0 0 1 0 0 0 0 2 6 0 0 3 0 0 18 0 1823.8636 Q15046 Q15046 580 597 KARS Lysine--tRNA ligase yes yes 2 1.2649E-05 61.435 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5123300 0 0 5123300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7557 2919 7862 37892 37871 37871 1 ENVFQEHQTLK QGSGHQEHINIHKLRENVFQEHQTLKEKEL HKLRENVFQEHQTLKEKELETGPKASHGYG R E N L K E 0 0 1 0 0 2 2 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1371.6783 Q14247 Q14247 60 70 CTTN Src substrate cortactin yes yes 2 0.0007518 63.283 By MS/MS By matching 1 1 0.65974 0.6117 42.596 2 Median NaN NaN NaN 0 0 Median 0.92495 0.82671 NaN 1 0 Median 0.47057 0.45262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3223200 2039200 1183900 0 0 0 1129200 572930 556310 2093900 1466300 627620 0 0 0 0 0 0 0 0 0 7558 2868 7863 37893;37894 37872 37872 1 ENVIFFQQGMLPAMSFDGK TKEFFTKHKYFGLKKENVIFFQQGMLPAMS FFQQGMLPAMSFDGKIILEEKNKVSMAPDG K E N G K I 1 0 1 1 0 2 1 2 0 1 1 1 2 3 1 1 0 0 0 1 0 0 19 0 2158.0227 Q16222 Q16222 189 207 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes yes 2 0.047148 20.106 By MS/MS By matching 1 1 0.89928 0.88489 10.562 2 Median 0.98371 0.95351 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8221 0.82121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1197500 605540 591990 923710 478470 445240 0 0 0 273820 127070 146750 0 0 0 0 0 0 0 0 0 7559 2981 7864 37895;37896 37873 37873 1 ENVIRPILK DVQISDKITISKNFKENVIRPILKAHFRRD ISKNFKENVIRPILKAHFRRDEFLGRINEI K E N L K A 0 1 1 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 9 1 1080.6655 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 547 555 CLPB Caseinolytic peptidase B protein homolog no no 2 0.016172 65.246 By matching By MS/MS By matching By matching 1 2 1 1 1.1261 1.143 12.725 5 Median 1.1261 1.143 NaN 1 0 Median 1.3565 1.2415 8.6405 2 0 Median 0.87365 0.97142 NaN 1 0 Median 1.0527 0.98784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8232700 4130900 4101800 1383600 633940 749620 3242300 1564100 1678200 1688400 1008000 680390 1918500 924830 993630 0 0 0 0 0 0 7560 1181 7865 37897;37898;37899;37900;37901 37874;37875 37874 2 ENVNLAQIR DLIFAFDEIVALGYRENVNLAQIRTFTEMD VALGYRENVNLAQIRTFTEMDSHEEKVFRA R E N I R T 1 1 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1055.5724 B0YIW6;P48444;Q6P1Q5 B0YIW6 164 172 ARCN1 Coatomer subunit delta yes no 2 0.00077011 98.997 By MS/MS By MS/MS 1 1 1.2542 1.1333 10.276 2 Median 1.2912 1.2187 NaN 1 0 Median 1.2184 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36775000 16263000 20513000 24796000 11037000 13759000 11979000 5225900 6753100 0 0 0 0 0 0 0 0 0 0 0 0 7561 561 7866 37902;37903 37876;37877;37878;37879 37876 4 ENVPENSRPATGYPLPPQIFNESQYR EKDIAANEENRKWMRENVPENSRPATGYPL GYPLPPQIFNESQYRGDYDAFFEARENNAV R E N Y R G 1 2 3 0 0 2 3 1 0 1 1 0 0 1 5 2 1 0 2 1 0 0 26 1 3002.4522 O75368 O75368 51 76 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 3 0.0050698 23.284 By MS/MS 1 0.34716 0.37701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34716 0.37701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3820200 2655100 1165000 0 0 0 0 0 0 3820200 2655100 1165000 0 0 0 0 0 0 0 0 0 7562 1663 7867 37904 37880 37880 1 ENWHEEVLR LSSLEGIVDQMVWFRENWHEEVLRQLQQGL QMVWFRENWHEEVLRQLQQGLAKCYSVAFE R E N L R Q 0 1 1 0 0 0 3 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 9 0 1210.5731 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3319 3327 TRRAP Transformation/transcription domain-associated protein yes no 2;3 0.0015688 56.563 By MS/MS By matching 2 2 0.95331 1.0114 22.135 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95331 1.0114 7.1615 2 0 Median 1.0267 0.89273 35.537 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16381000 8834800 7546400 0 0 0 0 0 0 14951000 8157600 6793700 1429900 677210 752730 0 0 0 0 0 0 7563 991 7868 37905;37906;37907;37908 37881;37882 37881 2 ENYLEENLLYAPSLR AGWEEVLRWQDRSSRENYLEENLLYAPSLR ENYLEENLLYAPSLRFIHGLIKQFSENIYE R E N L R F 1 1 2 0 0 0 3 0 0 0 4 0 0 0 1 1 0 0 2 0 0 0 15 0 1822.9101 H7BXY3;Q7L2E3 H7BXY3 931 945 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 1.6904E-10 109.6 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 0.91517 0.92039 28.449 7 Median 0.73835 0.71721 NaN 1 0 Median 1.1376 0.98199 NaN 1 0 Median 0.91517 1.0044 NaN 1 0 Median 1.047 0.92039 NaN 1 0 Median 0.84527 0.88362 20.04 2 0 Median 0.53126 0.46172 NaN 1 0 Median 10540000 5171100 5368400 3369900 1661700 1708200 1530100 688450 841620 2849300 1501100 1348200 230500 122000 108500 2087600 1036700 1050900 472240 161180 311070 7564 1244 7869 37909;37910;37911;37912;37913;37914;37915 37883;37884;37885;37886;37887 37885 5 ENYLGNSLMAPVGR QDQFNWEDVKTDKQRENYLGNSLMAPVGRW RENYLGNSLMAPVGRWQKGRDLTWYAKGRA R E N G R W 1 1 2 0 0 0 1 2 0 0 2 0 1 0 1 1 0 0 1 1 0 0 14 0 1519.7453 Q9BU76 Q9BU76 28 41 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 5.4254E-05 84.658 By MS/MS By matching 1 1 0.84987 0.78439 51.424 2 Median 0.58264 0.54527 NaN 1 0 Median 1.2397 1.1284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7023900 4238900 2785000 6688300 4050500 2637800 335620 188360 147260 0 0 0 0 0 0 0 0 0 0 0 0 7565 3835 7870 37916;37917 37888;37889 37889 2 ENYPLYIR ______________________________ CIAVIAKENYPLYIRSTPTENELKFHYMVH K E N I R S 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 0 8 0 1066.5447 A0A0B4J294;H3BP13;Q9UL33;H3BPN3;A0A0B4J286 A0A0B4J294 11 18 TRAPPC2L Trafficking protein particle complex subunit 2-like protein yes no 2 0.031575 58.981 By MS/MS 1 0.91365 0.89069 NaN 1 Median 0.91365 0.89069 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4222600 2217500 2005100 4222600 2217500 2005100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7566 218 7871 37918 37890 37890 1 ENYVWNVLLHR NEEIVMPEEQTGLVRENYVWNVLLHRGATP GLVRENYVWNVLLHRGATPEGIFLRVPTAS R E N H R G 0 1 2 0 0 0 1 0 1 0 2 0 0 0 0 0 0 1 1 2 0 0 11 0 1441.7466 Q92538 Q92538 896 906 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.00014351 84.476 By MS/MS By matching 1 1 1.0065 0.94141 3.577 2 Median 0.92626 0.91789 NaN 1 0 Median 1.0936 0.96552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3104400 1617200 1487100 2651900 1405800 1246000 452480 211380 241100 0 0 0 0 0 0 0 0 0 0 0 0 7567 3533 7872 37919;37920 37891;37892 37891 2 EPAAAISRPR FLQKQLTQPETHFGREPAAAISRPRADLPA THFGREPAAAISRPRADLPAEEPAPSTPPC R E P P R A 3 2 0 0 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 10 1 1066.5883 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 300 309 DBNL Drebrin-like protein yes no 2 0.052441 43.083 By MS/MS 1 0.80034 0.72176 NaN 1 Median NaN NaN NaN 0 0 Median 0.80034 0.72176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1715600 986300 729330 0 0 0 1715600 986300 729330 0 0 0 0 0 0 0 0 0 0 0 0 7568 4298 7873 37921 37893 37893 1 EPAADAAPGPSAAFR SGEEEGEGGGEAGGKEPAADAAPGPSAAFR EPAADAAPGPSAAFRLMVTRREPAVKLQYA K E P F R L 6 1 0 1 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 15 0 1426.6841 Q9UKN8;F2Z356 Q9UKN8 34 48 GTF3C4 General transcription factor 3C polypeptide 4 yes no 2 0.039798 37.968 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7569 4314 7874 37922 37894 37894 1 EPAAEIEALLGMDLVR NEHGVCIANEAINTREPAAEIEALLGMDLV PAAEIEALLGMDLVRLGLERGETAKEALDV R E P V R L 3 1 0 1 0 0 3 1 0 1 3 0 1 0 1 0 0 0 0 1 0 0 16 0 1725.8971 Q12765;B8ZZP4;C9J7U9;C9K052 Q12765 99 114 SCRN1 Secernin-1 yes no 2 0.043919 22.879 By matching By MS/MS By MS/MS 1 2 2 0.94073 0.88051 19.893 5 Median 0.94073 0.90121 NaN 1 0 Median 0.97567 0.84844 5.2469 2 0 Median 0.72725 0.75932 36.4 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10195000 5069900 5124700 615220 315040 300180 8007100 3901400 4105700 1572200 853480 718750 0 0 0 0 0 0 0 0 0 7570 2755 7875 37923;37924;37925;37926;37927 37895;37896 37895 2 EPAFEDITLESER ELDAVWEDIRERFVKEPAFEDITLESERKR VKEPAFEDITLESERKRIFKDFMHVLEHEC K E P E R K 1 1 0 1 0 0 4 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 13 0 1534.7151 O75400;A0A3F2YNY6 O75400 777 789 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 8.7493E-06 96.756 By MS/MS By MS/MS 2 1 0.98759 0.97217 19.728 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97391 1.098 17.217 2 0 Median 0.98759 0.83916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21403000 9903600 11499000 0 0 0 0 0 0 17197000 7849100 9347600 4206300 2054500 2151800 0 0 0 0 0 0 7571 1670 7876 37928;37929;37930 37897;37898;37899 37898 3 EPAVLELEGK PKPQTSPSPKRATKKEPAVLELEGKKWRVE RATKKEPAVLELEGKKWRVENQENVSNLVI K E P G K K 1 0 0 0 0 0 3 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1083.5812 Q01518 Q01518 318 327 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.013049 56.729 By MS/MS 1 1.0973 1.032 NaN 1 Median 1.0973 1.032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5985200 2992900 2992400 5985200 2992900 2992400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7572 2686 7877 37931 37900 37900 1 EPELEDLTR TSFLGSDDIGNIDVREPELEDLTRYDVGAI GNIDVREPELEDLTRYDVGAIRAHNGSLQH R E P T R Y 0 1 0 1 0 0 3 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 1100.535 P49792 P49792 413 421 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00086848 93.429 By MS/MS By MS/MS 1 1 1.2282 1.1656 43.836 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8114 0.85491 NaN 1 0 Median 1.859 1.5891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14021000 7050300 6971000 0 0 0 0 0 0 13277000 6820200 6456700 744480 230160 514310 0 0 0 0 0 0 7573 2401 7878 37932;37933 37901;37902 37901 2 EPELFQTVAEGLR GSMFSWVSKDARRKKEPELFQTVAEGLRQL KKEPELFQTVAEGLRQLYAQKLLPLEEHYR K E P L R Q 1 1 0 0 0 1 3 1 0 0 2 0 0 1 1 0 1 0 0 1 0 0 13 0 1487.762 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 28 40 EHD1 EH domain-containing protein 1 yes no 2 0.01125 52.79 By MS/MS By MS/MS 1 1 1.1074 1.1443 13.692 2 Median 1.0252 1.0387 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1961 1.2606 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3339000 1447700 1891300 1681600 692340 989230 0 0 0 1657400 755350 902080 0 0 0 0 0 0 0 0 0 7574 5 7879 37934;37935 37903;37904 37903 2 EPESILQVLSQMEK GLYNERVGNLTVVGKEPESILQVLSQMEKI KEPESILQVLSQMEKIVRITWSNPPAQGAR K E P E K I 0 0 0 0 0 2 3 0 0 1 2 1 1 0 1 2 0 0 0 1 0 0 14 0 1629.8284 P17174 P17174 277 290 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 2.9786E-07 110.08 By MS/MS 1 0.91138 0.77647 NaN 1 Median NaN NaN NaN 0 0 Median 0.91138 0.77647 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18961000 9053800 9906700 0 0 0 18961000 9053800 9906700 0 0 0 0 0 0 0 0 0 0 0 0 7575 2038 7880 37936 37905;37906 37905 2 EPEVLSTMAIIVNK DAVLIDYQRNVPAAREPEVLSTMAIIVNKL REPEVLSTMAIIVNKLGGHITAEIPQIFDA R E P N K L 1 0 1 0 0 0 2 0 0 2 1 1 1 0 1 1 1 0 0 2 0 0 14 0 1542.8327 O14980 O14980 797 810 XPO1 Exportin-1 yes yes 2 0.052111 24.089 By MS/MS By matching By matching By matching 1 2 1 1 0.83582 0.82092 41.161 5 Median 0.83582 0.82092 NaN 1 0 Median 0.71826 0.6285 25.833 2 0 Median 0.81361 0.85683 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5929 1.6345 NaN 1 0 Median NaN NaN NaN 0 0 Median 16059000 8183100 7875400 3991200 2224200 1766900 9436200 4691200 4745000 1694400 873920 820500 0 0 0 936700 393720 542980 0 0 0 7576 1510 7881 37937;37938;37939;37940;37941 37907 37907 1 EPEYVPWTATSGPGGIR QNRNSLYRREESLEKEPEYVPWTATSGPGG EYVPWTATSGPGGIRTVIIRQHEIVLKVAY K E P I R T 1 1 0 0 0 0 2 3 0 1 0 0 0 0 3 1 2 1 1 1 0 0 17 0 1815.8792 Q8WUM0 Q8WUM0 759 775 NUP133 Nuclear pore complex protein Nup133 yes yes 2 2.9843E-10 99.215 By MS/MS By matching By matching 1 1 1 0.86143 0.72727 18.18 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50606 0.55648 NaN 1 0 Median 0.92099 0.78729 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86143 0.72727 NaN 1 0 Median 11091000 6649900 4441100 0 0 0 0 0 0 10155000 6188600 3966500 742310 349600 392720 0 0 0 193500 111680 81824 7577 3492 7882 37942;37943;37944 37908;37909;37910 37908 3 EPFELEAFYTNLHEVPYPDAR NHPAPFSKVITFHKKEPFELEAFYTNLHEV AFYTNLHEVPYPDARIGSFTIQNVFPQSDG K E P A R I 2 1 1 1 0 0 4 0 1 0 2 0 0 2 3 0 1 0 2 1 0 0 21 0 2536.1911 O95757;E9PDE8;D6RJ96 O95757 438 458 HSPA4L Heat shock 70 kDa protein 4L yes no 3 0.023952 14.015 By MS/MS 1 0.90556 0.8049 NaN 1 Median NaN NaN NaN 0 0 Median 0.90556 0.8049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1155400 622000 533370 0 0 0 1155400 622000 533370 0 0 0 0 0 0 0 0 0 0 0 0 7578 1790 7883 37945 37911 37911 1 EPFFHGHDNYDQLVR MWSLGCMLASMIFRKEPFFHGHDNYDQLVR EPFFHGHDNYDQLVRIAKVLGTEDLYDYID K E P V R I 0 1 1 2 0 1 1 1 2 0 1 0 0 2 1 0 0 0 1 1 0 0 15 0 1872.8543 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2 P68400 230 244 CSNK2A1 Casein kinase II subunit alpha yes no 2;3;4 6.6412E-14 176.18 By matching By matching By MS/MS By MS/MS 3 2 4 3 0.94503 0.96807 12.89 12 Median 0.80991 0.81984 14.554 3 0 Median 0.94503 0.82491 1.7605 2 0 Median 0.89925 0.98702 4.1932 4 0 Median 1.1213 0.98971 12.279 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171240000 88970000 82270000 10225000 5192700 5032500 1711700 818020 893650 154500000 80878000 73620000 4806100 2081400 2724700 0 0 0 0 0 0 7579 394 7884 37946;37947;37948;37949;37950;37951;37952;37953;37954;37955;37956;37957 37912;37913;37914;37915;37916;37917;37918 37913 7 EPFFHGQDNYDQLVR MWSLGCMLASMIFRREPFFHGQDNYDQLVR EPFFHGQDNYDQLVRIAKVLGTEELYGYLK R E P V R I 0 1 1 2 0 2 1 1 1 0 1 0 0 2 1 0 0 0 1 1 0 0 15 0 1863.854 P19784;H3BSA1;H3BV19 P19784 231 245 CSNK2A2 Casein kinase II subunit alpha yes no 3 8.6527E-05 50.843 By matching By MS/MS 1 2 0.97258 0.993 8.5649 3 Plateau NaN NaN NaN 0 0 Median 1.0278 0.90641 NaN 1 0 Median 0.96215 0.993 9.5513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27807000 13651000 14155000 0 0 0 578940 292500 286440 27228000 13359000 13869000 0 0 0 0 0 0 0 0 0 7580 2069 7885 37958;37959;37960 37919;37920;37921 37920 3 EPFGTEGR IWNRDNIACVILTFKEPFGTEGRGGYFDEF CVILTFKEPFGTEGRGGYFDEFGIIRDVMQ K E P G R G 0 1 0 0 0 0 2 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 8 0 891.40865 P11413;E7EUI8;E9PD92;E7EM57 P11413 239 246 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.030362 38.962 By MS/MS By matching 1 1 0.84924 0.71936 30.05 2 Median NaN NaN NaN 0 0 Median 1.027 0.88966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70228 0.58165 NaN 1 0 Median 2102900 1006300 1096600 0 0 0 1746400 842180 904260 0 0 0 0 0 0 0 0 0 356450 164100 192360 7581 1964 7886 37961;37962 37922 37922 1 EPFHSILSVLK VVDAIFGFSFKGDVREPFHSILSVLKGLTV GDVREPFHSILSVLKGLTVPIASIDIPSGW R E P L K G 0 0 0 0 0 0 1 0 1 1 2 1 0 1 1 2 0 0 0 1 0 0 11 0 1268.7129 Q8NCW5;Q5T3I4 Q8NCW5 198 208 APOA1BP NAD(P)H-hydrate epimerase yes no 2;3 0.030236 31.422 By MS/MS By matching 2 2 1.0435 0.92367 18.131 4 Median 0.90702 0.84139 6.9363 2 0 Median 1.2911 1.0871 16.782 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63739000 34543000 29196000 55641000 31116000 24525000 8097800 3427500 4670300 0 0 0 0 0 0 0 0 0 0 0 0 7582 3420 7887 37963;37964;37965;37966 37923;37924 37923 2 EPFLLSGGDDGALK TAHDGDVNVISWSRREPFLLSGGDDGALKI REPFLLSGGDDGALKIWDLRQFKSGSPVAT R E P L K I 1 0 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 14 0 1417.7089 Q9BQ67 Q9BQ67 320 333 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 0.040486 38.634 By MS/MS 1 1.0062 0.99324 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0062 0.99324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4376700 2120800 2255900 0 0 0 0 0 0 4376700 2120800 2255900 0 0 0 0 0 0 0 0 0 7583 3784 7888 37967 37925 37925 1 EPFPTIYVDSQK KPFKTGLKALMTVGKEPFPTIYVDSQKENE VGKEPFPTIYVDSQKENERWNVISKSQLKN K E P Q K E 0 0 0 1 0 1 1 0 0 1 0 1 0 1 2 1 1 0 1 1 0 0 12 0 1422.7031 O43776;K7EQ35;K7EIU7;K7EJ19;K7EPK2 O43776 39 50 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2 0.00029009 83 By matching By MS/MS By MS/MS 1 1 2 0.88716 0.8065 7.7991 4 Median 0.78494 0.75408 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83887 0.81444 NaN 1 0 Median 0.98382 0.85186 9.1233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21106000 12099000 9007200 3790500 2361800 1428700 0 0 0 13590000 7839300 5750800 3725600 1897900 1827700 0 0 0 0 0 0 7584 1589 7889 37968;37969;37970;37971 37926;37927;37928 37926 3 EPFPTIYVDSQKENER KPFKTGLKALMTVGKEPFPTIYVDSQKENE PFPTIYVDSQKENERWNVISKSQLKNIKKM K E P E R W 0 1 1 1 0 1 3 0 0 1 0 1 0 1 2 1 1 0 1 1 0 0 16 1 1950.9323 O43776;K7EQ35;K7EIU7;K7EJ19;K7EPK2 O43776 39 54 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2;3 1.3915E-05 80.534 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 1 1 0.75293 0.76138 11.859 7 Median 0.65611 0.6577 7.8926 2 0 Median 0.96671 0.88497 NaN 1 0 Median 0.72311 0.81395 5.4386 2 0 Median 0.83039 0.76138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88995 0.73736 NaN 1 0 Median 100580000 56826000 43751000 36527000 22512000 14015000 4147800 2217000 1930800 54045000 29044000 25001000 5462300 2853500 2608700 0 0 0 394870 199040 195830 7585 1589 7890 37972;37973;37974;37975;37976;37977;37978 37929;37930;37931;37932;37933;37934 37933 6 EPFTIAQGK KKVERLTMQVSSLQREPFTIAQGKGQKLCE VSSLQREPFTIAQGKGQKLCEIERIHFFLS R E P G K G 1 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 9 0 989.5182 H0Y993;P35659;A0A494C028;H0Y8X0;A0A494C198;D6RDA2;D6R9L5 H0Y993 76 84 DEK Protein DEK yes no 2 0.00043262 128.57 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 0.98349 0.84892 10.552 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81131 0.80948 11.188 2 0 Median 1.0906 0.93004 10.981 4 0 Median 0.87388 0.83446 NaN 1 0 Median 1.1196 0.90607 10.02 2 0 Median 364040000 188160000 175880000 0 0 0 0 0 0 157350000 84073000 73279000 172080000 86907000 85170000 15033000 7487900 7545100 19573000 9689900 9882800 7586 1166 7891 37979;37980;37981;37982;37983;37984;37985;37986;37987 37935;37936;37937;37938;37939;37940;37941;37942;37943;37944;37945;37946;37947;37948;37949;37950;37951 37944 17 EPGLQIWR NSMVVEHPEFLKAGKEPGLQIWRVEKFDLV EFLKAGKEPGLQIWRVEKFDLVPVPTNLYG K E P W R V 0 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 8 0 997.53451 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14;A0A0U1RQL8;Q5T0I0 A0A0A0MS51 31 38 GSN Gelsolin yes no 2 0.0093648 60.961 By MS/MS By matching By matching 1 1 1 0.72473 0.5963 56.85 3 Median 0.28797 0.28552 NaN 1 0 Median 1.0028 0.87371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72473 0.5963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520900 2087200 1433800 1522900 984540 538340 1904700 1062100 842600 0 0 0 93377 40546 52831 0 0 0 0 0 0 + 7587 176 7892 37988;37989;37990 37952 37952 1 EPGTVALVSK PYEHEALFHTPVEGKEPGTVALVSKVGYKL PVEGKEPGTVALVSKVGYKLHGRTLRPALV K E P S K V 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 2 0 0 10 0 999.56006 Q9HAV7 Q9HAV7 187 196 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 2 0.025495 35.511 By MS/MS 1 1.0379 0.96477 NaN 1 Median 1.0379 0.96477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6146100 3115100 3030900 6146100 3115100 3030900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7588 4013 7893 37991 37953 37953 1 EPGVEDTEWSNTQTEEAIQTR KTITKKRKKEIEESKEPGVEDTEWSNTQTE TEWSNTQTEEAIQTRSRTRKRVQK______ K E P T R S 1 1 1 1 0 2 5 1 0 1 0 0 0 0 1 1 4 1 0 1 0 0 21 0 2419.0775 Q99986;H0YJF7 Q99986 367 387 VRK1 Serine/threonine-protein kinase VRK1 yes no 3 0.00012497 35.036 By MS/MS By matching 1 1 0.74986 0.70328 7.5919 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66407 0.66652 NaN 1 0 Median 0.84674 0.74206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4351700 2503200 1848500 0 0 0 0 0 0 4094700 2358500 1736100 257070 144660 112410 0 0 0 0 0 0 7589 3775 7894 37992;37993 37954 37954 1 EPIPVLPTVHYNMGGIPTNYK ISETAMIFAGVDVTKEPIPVLPTVHYNMGG PTVHYNMGGIPTNYKGQVLRHVNGQDQIVP K E P Y K G 0 0 2 0 0 0 1 2 1 2 1 1 1 0 4 0 2 0 2 2 0 0 21 0 2339.1984 P31040;D6RFM5;A0A087X1I3 P31040 398 418 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 0.058461 7.712 By MS/MS By matching 1 1 0.55147 0.50246 21.962 2 Median 0.44741 0.43019 NaN 1 0 Median 0.67973 0.58687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5687500 3383200 2304300 3375700 2243200 1132400 2311900 1140000 1171900 0 0 0 0 0 0 0 0 0 0 0 0 7590 2200 7895 37994;37995 37955 37955 1 EPISVSSEQVLK TTPPLLECVTWIVLKEPISVSSEQVLKFRK VLKEPISVSSEQVLKFRKLNFNGEGEPEEL K E P L K F 0 0 0 0 0 1 2 0 0 1 1 1 0 0 1 3 0 0 0 2 0 0 12 0 1314.7031 P00918 P00918 213 224 CA2 Carbonic anhydrase 2 yes yes 2 0.0089219 57.348 By MS/MS 1 1.0027 0.91478 NaN 1 Median 1.0027 0.91478 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17048000 9330100 7718400 17048000 9330100 7718400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7591 1827 7896 37996 37956 37956 1 EPLHLGDIAR E P A R 1 1 0 1 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1119.6037 REV__Q9BR09 yes yes 2 0.0027284 59.245 By MS/MS By matching 2 1 1.1058 1.0742 24.23 3 Median 1.1058 1.0742 0 2 0 Median NaN NaN NaN 0 0 Median 1.6129 1.6344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30198000 13746000 16452000 26471000 12360000 14110000 0 0 0 3727800 1385700 2342100 0 0 0 0 0 0 0 0 0 + 7592 4556 7897 37997;37998;37999 37957;37958 37957 2 EPLLAHVR PQQLGAVFDKCPELREPLLAHVRSFTPHQQ DKCPELREPLLAHVRSFTPHQQAHIPNSIM R E P V R S 1 1 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 933.5396 Q92797;M0R033 Q92797 1073 1080 SYMPK Symplekin yes no 2 0.016198 49.59 By MS/MS 3 0.94494 0.96751 17.581 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94494 0.96751 17.581 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4218300 2303100 1915200 0 0 0 0 0 0 4218300 2303100 1915200 0 0 0 0 0 0 0 0 0 7593 3558 7898 38000;38001;38002 37959;37960 37960 2 EPLLVTNGADNALR NAHSTAIAGLTFLHREPLLVTNGADNALRI REPLLVTNGADNALRIWIFDGPTGEGRLLR R E P L R I 2 1 2 1 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 14 0 1481.7838 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 289 302 WDR36 WD repeat-containing protein 36 yes no 2 1.9814E-05 147.74 By matching By MS/MS By matching 2 2 2 1.2815 1.109 7.3981 6 Median NaN NaN NaN 0 0 Median 1.2815 1.1132 3.7301 2 0 Median 0.97137 1.0349 2.4289 2 0 Median 1.3811 1.1932 7.1526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16505000 7880000 8625400 0 0 0 3461300 1568300 1893000 11609000 5698800 5909900 1435400 612890 822540 0 0 0 0 0 0 7594 188 7899 38003;38004;38005;38006;38007;38008 37961;37962 37962 2 EPLPPIQQHIWNMLNPPAEVTTK QRLFQCLLHRALHPREPLPPIQQHIWNMLN HIWNMLNPPAEVTTKSQIPLSKIKTLFPLI R E P T K S 1 0 2 0 0 2 2 0 1 2 2 1 1 0 5 0 2 1 0 1 0 0 23 0 2652.3734 P13010 P13010 503 525 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 1.0475E-08 65.833 By MS/MS By MS/MS 1 1 0.53865 0.47543 10.212 2 Median 0.49682 0.4423 NaN 1 1 Median 0.584 0.51103 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47202000 32878000 14325000 23984000 17065000 6919500 23218000 15813000 7405100 0 0 0 0 0 0 0 0 0 0 0 0 7595 1986 7900 38009;38010 37963;37964;37965;37966;37967 37965 5 EPLPTLPLGR VDPVADIATLRIQTKEPLPTLPLGRSADVR RIQTKEPLPTLPLGRSADVRQGEFVVAMGS K E P G R S 0 1 0 0 0 0 1 1 0 0 3 0 0 0 3 0 1 0 0 0 0 0 10 0 1091.6339 A0A0C4DG44;O43464 A0A0C4DG44 225 234 HTRA2 Serine protease HTRA2, mitochondrial yes no 2 0.035483 50.607 By MS/MS 2 0.45175 0.42204 NaN 1 Median 0.45175 0.42204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8806600 7014900 1791700 8806600 7014900 1791700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7596 234 7901 38011;38012 37968;37969 37969 2 EPLSLINVR ARPGPGVWDPNWDRREPLSLINVRKRNVES PNWDRREPLSLINVRKRNVESGEEELASKL R E P V R K 0 1 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 9 0 1039.6026 Q96HS1 Q96HS1 66 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.003417 65.252 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.3086 1.1097 12.188 5 Median 0.99251 0.92868 NaN 1 0 Median 1.3144 1.1031 NaN 1 0 Median 1.2467 1.1965 10.645 2 0 Median 1.4266 1.1936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19614000 8850800 10763000 11637000 5516000 6120800 2539400 1034300 1505200 4203200 1811700 2391500 1234900 488940 745970 0 0 0 0 0 0 7597 3669 7902 38013;38014;38015;38016;38017 37970;37971;37972;37973 37970 4 EPLTQAVGLSTQAEGTR VNVALNMLGELDKKKEPLTQAVGLSTQAEG LTQAVGLSTQAEGTRTLKSLLMFTMENCFY K E P T R T 2 1 0 0 0 2 2 2 0 0 2 0 0 0 1 1 3 0 0 1 0 0 17 0 1756.8955 Q5SRE5 Q5SRE5 1629 1645 NUP188 Nucleoporin NUP188 homolog yes yes 2 3.9064E-07 90.926 By MS/MS By matching 1 1 0.7864 0.77275 16.343 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62653 0.68841 NaN 1 0 Median 0.98706 0.86741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6858300 4074100 2784200 0 0 0 0 0 0 6230000 3775700 2454300 628270 298320 329950 0 0 0 0 0 0 7598 3074 7903 38018;38019 37974 37974 1 EPLVATNLPGR QAAKKVHTSKGDLPREPLVATNLPGRGQLQ DLPREPLVATNLPGRGQLQKLASERNLFIS R E P G R G 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 1 0 0 1 0 0 11 0 1165.6455 P42166 P42166 254 264 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.00013666 117.89 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 1 2 0.68804 0.64515 11.77 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59993 0.63654 12.061 5 0 Median 0.80463 0.68058 15.007 6 0 Median 0.625 0.63784 NaN 1 0 Median 0.74473 0.62321 6.5072 2 0 Median 235260000 138300000 96957000 0 0 0 0 0 0 186460000 110800000 75663000 32641000 17835000 14805000 10149000 6328300 3820700 6007600 3339600 2668000 7599 2306 7904 38020;38021;38022;38023;38024;38025;38026;38027;38028;38029;38030;38031;38032;38033 37975;37976;37977;37978;37979;37980;37981;37982;37983;37984;37985;37986;37987;37988;37989 37981 15 EPLVDVVDPK VYGFDMSCIKDVAIKEPLVDVVDPKQLVTN DVAIKEPLVDVVDPKQLVTNACLIKEVDIY K E P P K Q 0 0 0 2 0 0 1 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 10 0 1109.5968 E9PKG1;Q99873;E9PQ98;E9PIX6 E9PKG1 188 197 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 0.0093173 45.368 By MS/MS By MS/MS By MS/MS 1 2 1 0.64111 0.61129 13.468 4 Median 0.55223 0.55255 NaN 1 0 Median 0.70366 0.60967 18.438 2 0 Median 0.65421 0.67628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54137000 30516000 23621000 8875500 4643300 4232200 35004000 19980000 15024000 10257000 5892900 4364500 0 0 0 0 0 0 0 0 0 7600 947 7905 38034;38035;38036;38037 37990;37991;37992;37993 37993 4 EPLYEKDSSVAAR TINLYPLTNYTFGTKEPLYEKDSSVAARFQ TKEPLYEKDSSVAARFQRMREEFDKIGMRR K E P A R F 2 1 0 1 0 0 2 0 0 0 1 1 0 0 1 2 0 0 1 1 0 0 13 1 1463.7256 O43809 O43809 51 63 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 0.00028387 62.891 By MS/MS By MS/MS By MS/MS 1 2 2 0.91552 0.85121 15.153 5 Median NaN NaN NaN 0 0 Median 1.2593 1.1831 NaN 1 0 Median 0.81432 0.84997 0.20571 2 0 Median 0.96325 0.85268 7.188 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29742000 15417000 14325000 0 0 0 927120 394950 532170 19897000 10655000 9241600 8917900 4366400 4551500 0 0 0 0 0 0 7601 1592 7906 38038;38039;38040;38041;38042 37994;37995;37996;37997;37998;37999;38000;38001 37998 8 EPLYVGVDDDK QTRKVEDLARISLKKEPLYVGVDDDKANAT SLKKEPLYVGVDDDKANATVDGLEQGYVVC K E P D K A 0 0 0 3 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1248.5874 Q9NVP1;H7C452 Q9NVP1 382 392 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.0025641 52.79 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.79977 0.8216 41.249 5 Median NaN NaN NaN 0 0 Median 1.9708 1.7235 NaN 1 0 Median 0.79977 0.8216 NaN 1 0 Median 1.0126 0.88067 NaN 1 0 Median 0.6908 0.70426 NaN 1 0 Median 0.69703 0.57942 NaN 1 0 Median 27690000 15236000 12455000 0 0 0 569510 148620 420890 8248100 4526800 3721200 1069800 509830 559950 15269000 8686900 6581800 2534300 1363700 1170600 7602 4137 7907 38043;38044;38045;38046;38047 38002;38003 38002 2 EPMDLATMEER PVDPNDAPDYYGVIKEPMDLATMEERVQRR GVIKEPMDLATMEERVQRRYYEKLTEFVAD K E P E R V 1 1 0 1 0 0 3 0 0 0 1 0 2 0 1 0 1 0 0 0 0 0 11 0 1320.569 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;J3QQQ8 Q12830 2970 2980 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00047715 68.893 By MS/MS 1 0.65847 0.71805 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65847 0.71805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3493600 1816400 1677200 0 0 0 0 0 0 3493600 1816400 1677200 0 0 0 0 0 0 0 0 0 7603 2762 7908 38048 38004 38004 1 EPNPPIDEVISTPGVVAR QQLSATQKFRKLLSKEPNPPIDEVISTPGV PPIDEVISTPGVVARFVEFLKRKENCTLQF K E P A R F 1 1 1 1 0 0 2 1 0 2 0 0 0 0 4 1 1 0 0 3 0 0 18 0 1888.9894 P52294;C9JYI4;C9J352;C9JWD9;F2Z3G4;C9J4U1 P52294 113 130 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2;3 1.3205E-11 89.629 By MS/MS By MS/MS By matching 1 3 1 0.47875 0.48035 8.6304 5 Median 0.50325 0.49079 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46217 0.4632 9.764 3 2 Median 0.57884 0.49028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30168000 19541000 10627000 4620200 2905300 1715000 0 0 0 25128000 16399000 8729000 420320 237550 182760 0 0 0 0 0 0 7604 2449 7909 38049;38050;38051;38052;38053 38005;38006;38007;38008;38009;38010 38009 6 EPNPPIDQVIQKPGVVQR QQLTATQKFRKLLSKEPNPPIDQVIQKPGV PPIDQVIQKPGVVQRFVKFLERNENCTLQF K E P Q R F 0 1 1 1 0 3 1 1 0 2 0 1 0 0 4 0 0 0 0 3 0 0 18 1 2013.1007 O15131;Q5TD90 O15131 111 128 KPNA5 Importin subunit alpha-6 yes no 3 0.019695 18.76 By MS/MS 1 0.34115 0.3808 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34115 0.3808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3556800 2523900 1032900 0 0 0 0 0 0 3556800 2523900 1032900 0 0 0 0 0 0 0 0 0 7605 1524 7910 38054 38011 38011 1 EPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSK SGPSGNNQNQGNMQREPNQAFGSGNNSYSG GSGFNGGFGSSMDSKSSGWGM_________ R E P S K S 5 0 6 1 0 1 1 12 0 1 0 1 1 3 1 12 0 1 1 0 0 0 47 0 4417.8439 Q13148;A0A1W2PNU8;A0A087WVX6 Q13148 362 408 TARDBP TAR DNA-binding protein 43 yes no 3 0.022015 2.7379 By MS/MS 1 0.73707 0.75779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73707 0.75779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1197700 721810 475870 0 0 0 0 0 0 1197700 721810 475870 0 0 0 0 0 0 0 0 0 7606 2789 7911 38055 38012 38012 1 EPPAASWAVQPHYQLPTAFR EEHHAHRVLTHFFEREPPAASWAVQPHYQL SWAVQPHYQLPTAFRAEWEPPEARAPSATP R E P F R A 4 1 0 0 0 2 1 0 1 0 1 0 0 1 4 1 1 1 1 1 0 0 20 0 2265.1331 Q8IYS1 Q8IYS1 69 88 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 3 0.00048791 28.891 By MS/MS By matching By matching 1 1 1 0.49294 0.48035 34.561 3 Median 0.49294 0.48035 NaN 1 0 Median 0.96541 0.8172 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48801 0.42724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12008000 6643900 5363900 6042700 3383600 2659100 5629400 3039900 2589500 0 0 0 335670 220440 115230 0 0 0 0 0 0 7607 3345 7912 38056;38057;38058 38013 38013 1 EPPADVWTPPAR LCNVVEQFLQADLAREPPADVWTPPARASA LAREPPADVWTPPARASAPSPNAQVACDHC R E P A R A 2 1 0 1 0 0 1 0 0 0 0 0 0 0 4 0 1 1 0 1 0 0 12 0 1334.6619 Q14258;A0A3B3IUA7 Q14258 84 95 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.05252 43.308 By MS/MS 1 0.85263 0.83189 NaN 1 Median 0.85263 0.83189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4567800 2125500 2442200 4567800 2125500 2442200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7608 2870 7913 38059 38014 38014 1 EPPGGQLLAVPAVSVDR LPPPPPPSSIPAPAREPPGGQLLAVPAVSV PGGQLLAVPAVSVDRKGPKEGLPMGPQPPP R E P D R K 2 1 0 1 0 1 1 2 0 0 2 0 0 0 3 1 0 0 0 3 0 0 17 0 1703.9206 Q86Y37 Q86Y37 51 67 CACUL1 CDK2-associated and cullin domain-containing protein 1 yes yes 2 2.3433E-05 74.76 By MS/MS By matching 1 1 0.64278 0.63229 11.601 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53602 0.5825 NaN 1 0 Median 0.77079 0.68635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2682800 1565300 1117500 0 0 0 0 0 0 2524500 1485800 1038600 158300 79424 78879 0 0 0 0 0 0 7609 3304 7914 38060;38061 38015 38015 1 EPPGLIFNKVEVSEDEPASK EVVEATPEGACTEPREPPGLIFNKVEVSED IFNKVEVSEDEPASKAQRRKEKRQRVKGNL R E P S K A 1 0 1 1 0 0 4 1 0 1 1 2 0 1 3 2 0 0 0 2 0 0 20 1 2184.095 O75683 O75683 194 213 SURF6 Surfeit locus protein 6 yes yes 3 0.011885 28.505 By MS/MS 1 0.55087 0.5878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55087 0.5878 NaN 1 1 Median NaN NaN NaN 0 0 Median 6662100 3802600 2859500 0 0 0 0 0 0 0 0 0 0 0 0 6662100 3802600 2859500 0 0 0 7610 1690 7915 38062 38016 38016 1 EPPGSTAGLPQEPK QTLFGKKKSFDPSAREPPGSTAGLPQEPKT REPPGSTAGLPQEPKTTAEDGVPAPPLLDP R E P P K T 1 0 0 0 0 1 2 2 0 0 1 1 0 0 4 1 1 0 0 0 0 0 14 0 1406.7042 Q9BTC0 Q9BTC0 1334 1347 DIDO1 Death-inducer obliterator 1 yes yes 2 0.015647 30.331 By matching By MS/MS 1 1 1.3643 1.4369 141.6 2 Median 3.9298 3.911 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47365 0.52794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12229000 3780900 8448200 9446100 2002700 7443400 0 0 0 2783000 1778200 1004800 0 0 0 0 0 0 0 0 0 7611 3824 7916 38063;38064 38017 38017 1 EPPLLLGVLHPNTK MLLESPIDPQPLSFKEPPLLLGVLHPNTKL KEPPLLLGVLHPNTKLRQAERLFENQLVGP K E P T K L 0 0 1 0 0 0 1 1 1 0 4 1 0 0 3 0 1 0 0 1 0 0 14 0 1526.8821 Q9HDC9;H0Y512 Q9HDC9 74 87 APMAP Adipocyte plasma membrane-associated protein yes no 3 0.029399 18.833 By MS/MS By matching 1 1 0.76284 0.74308 12.571 2 Median 0.72029 0.67988 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8079 0.81216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7117800 4180500 2937300 5081100 2857300 2223700 0 0 0 2036800 1323200 713600 0 0 0 0 0 0 0 0 0 7612 4039 7917 38065;38066 38018;38019 38019 2 EPPLSLTIHLTSPVVR LQSVDDAAIVIKNTKEPPLSLTIHLTSPVV PPLSLTIHLTSPVVREEMEKVLAGETLSVN K E P V R E 0 1 0 0 0 0 1 0 1 1 3 0 0 0 3 2 2 0 0 2 0 0 16 0 1758.004 Q12906;K7EKJ9;K7EQR9;K7EKY0;K7EPG3 Q12906 162 177 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 1.7895E-13 99.671 By MS/MS By MS/MS By matching By matching 4 2 1 2 0.65106 0.61872 51.522 8 Median NaN NaN NaN 0 0 Median 0.65106 0.57238 56.892 4 0 Median 0.56107 0.59635 NaN 1 0 Median 0.82211 0.70594 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4601 0.38122 75.582 2 0 Median 29965000 17924000 12042000 0 0 0 12839000 7438600 5400300 8266700 5387600 2879100 916160 453120 463030 0 0 0 7943500 4644200 3299300 7613 2769 7918 38067;38068;38069;38070;38071;38072;38073;38074;38075 38020;38021;38022 38021 3 EPPTDVTPTFLTTGVLSTLR HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV VTPTFLTTGVLSTLRQADFEAHNILRESGY K E P L R Q 0 1 0 1 0 0 1 1 0 0 3 0 0 1 3 1 6 0 0 2 0 0 20 0 2144.1365 P49915 P49915 570 589 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 1.9814E-09 85.837 By MS/MS By matching By MS/MS By matching 4 4 3 2 0.70258 0.69198 37.063 13 Median 0.62346 0.61438 58.301 4 1 Median 0.75041 0.6425 14.173 4 0 Median 0.65501 0.69558 27.279 3 0 Median NaN NaN NaN 0 0 Median 0.78435 0.82449 16.398 2 0 Median NaN NaN NaN 0 0 Median 16827000 9772500 7054600 4798700 2870400 1928300 3138500 1732600 1405900 7997200 4664500 3332800 0 0 0 892670 504970 387690 0 0 0 7614 2405 7919 38076;38077;38078;38079;38080;38081;38082;38083;38084;38085;38086;38087;38088 38023;38024;38025;38026;38027;38028;38029 38026 7 EPPYGADVLR IHPDVVVNGGQDQSKEPPYGADVLRWWVAD QDQSKEPPYGADVLRWWVADSNVFTEVAIG K E P L R W 1 1 0 1 0 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 0 0 10 0 1115.5611 Q9NSE4 Q9NSE4 688 697 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.0014621 65.305 By MS/MS By MS/MS 1 2 1.0482 0.88431 20.688 3 Median 0.68274 0.65799 NaN 1 0 Median 1.0597 0.931 7.2771 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15568000 8711800 6856700 9792700 5906200 3886500 5775800 2805500 2970200 0 0 0 0 0 0 0 0 0 0 0 0 7615 4103 7920 38089;38090;38091 38030;38031;38032;38033 38031 4 EPSFDWK SDPGLLTNTMDVFVKEPSFDWKNFEQKMLK NTMDVFVKEPSFDWKNFEQKMLKKGGSWIQ K E P W K N 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 7 0 907.40758 P78527;H0YG84 P78527 4008 4014 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.040795 44.692 By matching By MS/MS By MS/MS By matching By matching 1 3 1 2 1 1.1952 1.0929 20.737 8 Median 0.71574 0.71181 NaN 1 0 Median 1.2336 1.1222 4.1395 3 0 Median 0.77691 0.82987 NaN 1 0 Median 1.219 1.1321 1.2365 2 0 Median 0.72211 0.74084 NaN 1 0 Median NaN NaN NaN 0 0 Median 30079000 16440000 13639000 5223700 3070000 2153700 6606800 2948800 3658000 15266000 8936100 6330000 1986300 920970 1065300 996080 564280 431800 0 0 0 7616 2647 7921 38092;38093;38094;38095;38096;38097;38098;38099 38034;38035;38036;38037 38035 4 EPSPPIDEVINTPR LQLATTQKFRKLLSKEPSPPIDEVINTPRV KEPSPPIDEVINTPRVVDRFVEFLKRNENC K E P P R V 0 1 1 1 0 0 2 0 0 2 0 0 0 0 4 1 1 0 0 1 0 0 14 0 1562.794 O60684;Q5TFJ7;S4R3E5 O60684 111 124 KPNA6 Importin subunit alpha-7 yes no 2 0.00030467 73.848 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.90087 0.80159 20.438 6 Median 0.81858 0.78659 NaN 1 0 Median 1.0725 0.95502 NaN 1 0 Median 0.63081 0.62835 NaN 1 0 Median 0.85579 0.73774 NaN 1 0 Median 1.1198 1.1291 NaN 1 0 Median 0.94832 0.81687 NaN 1 0 Median 29138000 15510000 13628000 7085400 3079800 4005600 380380 185440 194940 16609000 10242000 6367100 1516800 632120 884710 2897600 1004900 1892700 648790 365450 283340 7617 1626 7922 38100;38101;38102;38103;38104;38105 38038;38039;38040;38041 38039 4 EPTPVLGSGAAAAGR TNSKGPPDFSSDEEREPTPVLGSGAAAAGR EPTPVLGSGAAAAGRSRAAVGRKATKKTDK R E P G R S 4 1 0 0 0 0 1 3 0 0 1 0 0 0 2 1 1 0 0 1 0 0 15 0 1352.7048 P42166;P42167;G5E972 P42166 72 86 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 0.00031538 64.64 By MS/MS 1 0.73762 0.76461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73762 0.76461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6089000 3734800 2354200 0 0 0 0 0 0 6089000 3734800 2354200 0 0 0 0 0 0 0 0 0 7618 2306;2307 7923 38106 38042 38042 1 EPTSSEQGGLEGSGSAAGEGKPALSEEER VDEPLETPLGHILGREPTSSEQGGLEGSGS SAAGEGKPALSEEERQEQTKRMLELVAQKQ R E P E R Q 3 1 0 0 0 1 7 6 0 0 2 1 0 0 2 5 1 0 0 0 0 0 29 1 2845.285 E9PJ81;E9PRQ7;Q04323 E9PJ81 63 91 UBXN1 UBX domain-containing protein 1 yes no 3 4.911E-14 54.732 By MS/MS By matching 1 1 0.79719 0.82591 5.8511 2 Median NaN NaN NaN 0 0 Median 0.83973 0.79243 NaN 1 0 Median 0.7568 0.86079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19113000 10266000 8846800 0 0 0 11401000 6137500 5263300 7711900 4128300 3583600 0 0 0 0 0 0 0 0 0 7619 942 7924 38107;38108 38043;38044 38044 2 EPTYQLNIHDIK LARHNTYLQECTGQREPTYQLNIHDIKLLF GQREPTYQLNIHDIKLLFLRFAMEQSFSAD R E P I K L 0 0 1 1 0 1 1 0 1 2 1 1 0 0 1 0 1 0 1 0 0 0 12 0 1469.7514 Q5T4S7;X6R960 Q5T4S7 4951 4962 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.032284 20.124 By matching By MS/MS By matching 1 1 1 1.0709 0.96918 11.695 2 Median 1.1216 1.0527 NaN 1 0 Median 1.0225 0.89225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8033300 3881300 4152000 1188500 500550 687930 5113000 2523100 2589900 1731800 857650 874170 0 0 0 0 0 0 0 0 0 7620 3089 7925 38109;38110;38111 38045;38046 38045 2 EPVDFEQWIEK SYFVQTLKIEKSTSKEPVDFEQWIEKDLVH STSKEPVDFEQWIEKDLVHTEGQLQNEEIV K E P E K D 0 0 0 1 0 1 3 0 0 1 0 1 0 1 1 0 0 1 0 1 0 0 11 0 1418.6718 A6NIR2;X6R7Y7;Q9Y547 A6NIR2 81 91 HSPB11 Intraflagellar transport protein 25 homolog yes no 2 0.0023908 53.751 By MS/MS By matching 2 1 0.91181 0.66796 18.516 3 Plateau 0.77987 0.78359 22.578 2 0 Median NaN NaN NaN 0 0 Median 0.66458 0.66611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9258000 4640100 4617900 7631200 3664800 3966400 0 0 0 1626800 975340 651470 0 0 0 0 0 0 0 0 0 7621 521 7926 38112;38113;38114 38047;38048 38048 2 EPVGEGEALLGMDLLR NEHGVCIGNEAVWTKEPVGEGEALLGMDLL PVGEGEALLGMDLLRPFHGTLKA_______ K E P L R P 1 1 0 1 0 0 3 3 0 0 4 0 1 0 1 0 0 0 0 1 0 0 16 0 1697.8658 J3KT79;J3QR84;J3QRJ1;J3QL71;Q96FV2 J3KT79 104 119 SCRN2 Secernin-2 yes no 2 0.00072575 57.802 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7622 1333 7927 38115 38049 38049 1 EPVLAQLR ESHMKSRKAREQEAREPVLAQLRGLVSTLQ AREQEAREPVLAQLRGLVSTLQSATEQMAA R E P L R G 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 924.53927 Q6P2E9;I3L2F4 Q6P2E9 1168 1175 EDC4 Enhancer of mRNA-decapping protein 4 yes no 2 0.064877 47.067 By MS/MS 2 1.115 0.9569 22.63 2 Median NaN NaN NaN 0 0 Median 1.115 0.9569 22.63 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5355900 2466300 2889600 0 0 0 5355900 2466300 2889600 0 0 0 0 0 0 0 0 0 0 0 0 7623 3155 7928 38116;38117 38050;38051 38050 2 EPVQLETLSIR MNTHLKAVKMTLKNREPVQLETLSIRGNNI LKNREPVQLETLSIRGNNIRYFILPDSLPL R E P I R G 0 1 0 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1283.7085 P62314;J3QLI9 P62314 51 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2 1.8518E-06 162.88 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 0.97814 0.76963 23.837 11 Median 0.89749 0.8764 31.83 2 1 Median 0.75506 0.63889 46.93 2 0 Median 0.80956 0.79394 10.829 2 0 Median 0.97814 0.76963 NaN 1 0 Median 0.80264 0.84621 33.284 2 1 Median 1.026 0.78366 5.7018 2 0 Median 229450000 117530000 111910000 21310000 9921600 11388000 3173200 1998000 1175200 125360000 68986000 56376000 3011600 1738500 1273200 9220500 4727000 4493500 67368000 30161000 37207000 7624 2585 7929 38118;38119;38120;38121;38122;38123;38124;38125;38126;38127;38128 38052;38053;38054;38055;38056;38057;38058;38059;38060 38054 9 EPVSDYQVLR EFPDPHTYIKTPTYREPVSDYQVLREKAAS TPTYREPVSDYQVLREKAASQRRDVERALT R E P L R E 0 1 0 1 0 1 1 0 0 0 1 0 0 0 1 1 0 0 1 2 0 0 10 0 1204.6088 Q7Z7C8;B4DZU5 Q7Z7C8 167 176 TAF8 Transcription initiation factor TFIID subunit 8 yes no 2 0.030718 47.198 By MS/MS 1 0.70318 0.76189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70318 0.76189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4179000 2442300 1736600 0 0 0 0 0 0 4179000 2442300 1736600 0 0 0 0 0 0 0 0 0 7625 3255 7930 38129 38061 38061 1 EPVVTPQDLEGPGR LLDGLVRLQHLRFLREPVVTPQDLEGPGRA REPVVTPQDLEGPGRAESKESVGSRDSSKR R E P G R A 0 1 0 1 0 1 2 2 0 0 1 0 0 0 3 0 1 0 0 2 0 0 14 0 1492.7522 Q66K74 Q66K74 456 469 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 2 0.0028695 40.589 By MS/MS 1 0.88487 0.75363 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88487 0.75363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1898600 1004600 894050 0 0 0 0 0 0 0 0 0 1898600 1004600 894050 0 0 0 0 0 0 7626 3121 7931 38130 38062 38062 1 EPWLLPSQHNDIIR QPFFRAHAHLDTGRREPWLLPSQHNDIIRD REPWLLPSQHNDIIRDALGQRYSLLPFWYT R E P I R D 0 1 1 1 0 1 1 0 1 2 2 0 0 0 2 1 0 1 0 0 0 0 14 0 1716.8948 E9PKU7;Q14697;F5H6X6 Q14697 685 698 GANAB Neutral alpha-glucosidase AB no no 3 0.00085467 39.005 By MS/MS By matching By matching 1 2 1 0.89548 0.76326 20.165 4 Median 0.60663 0.58478 NaN 1 0 Median 0.89548 0.76326 1.636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90474 0.957 NaN 1 0 Median NaN NaN NaN 0 0 Median 23356000 14907000 8449700 9326700 6995700 2331000 12093000 7133200 4959800 0 0 0 0 0 0 1936500 777660 1158900 0 0 0 7627 2896;951 7932 38131;38132;38133;38134 38063 38063 1 EPYNYFLLLR HKIVNSSMELAQTAKEPYNYFLLLRALFRS AQTAKEPYNYFLLLRALFRSIGGGSHDLLY K E P L R A 0 1 1 0 0 0 1 0 0 0 3 0 0 1 1 0 0 0 2 0 0 0 10 0 1326.6972 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 751 760 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00065365 112.17 By MS/MS By matching 1 1 0.95405 0.9128 0.41266 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8684 0.91546 NaN 1 0 Median 1.0481 0.91014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12833000 6896900 5935800 0 0 0 0 0 0 12373000 6667400 5705500 459740 229470 230270 0 0 0 0 0 0 7628 991 7933 38135;38136 38064;38065;38066 38065 3 EQAAALPPTLSR EEEIRSHRPTLDALREQAAALPPTLSRTPE ALREQAAALPPTLSRTPEVQSRVPTLERHY R E Q S R T 3 1 0 0 0 1 1 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 12 0 1252.6776 O15020 O15020 808 819 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 9.0323E-05 92.239 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.098 0.94215 57.445 4 Median NaN NaN NaN 0 0 Median 2.7562 2.3163 NaN 1 0 Median 0.58277 0.63815 NaN 1 0 Median 0.86203 0.75852 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3987 1.1702 NaN 1 0 Median 11184000 6406100 4778200 0 0 0 1063400 316130 747270 8234400 5299200 2935200 1220500 536180 684310 0 0 0 666000 254580 411420 7629 1512 7934 38137;38138;38139;38140 38067;38068;38069 38067 3 EQADFALEALAK RIKVGRDYVQKAQTKEQADFALEALAKATY QTKEQADFALEALAKATYERLFRWLVLRLN K E Q A K A 4 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1304.6612 Q7Z406 Q7Z406 434 445 MYH14 Myosin-14 no no 2 0.00039037 80.102 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.1027 1.1471 36.034 6 Median 1.2484 1.214 1.241 2 0 Median 1.0507 0.92962 NaN 1 0 Median 0.65782 0.72751 57.635 2 0 Median NaN NaN NaN 0 0 Median 1.1572 1.2113 NaN 1 0 Median NaN NaN NaN 0 0 Median 153830000 71399000 82433000 80222000 35809000 44413000 47037000 22621000 24417000 16383000 8230500 8152900 0 0 0 10189000 4739000 5450500 0 0 0 7630 3242 7935 38141;38142;38143;38144;38145;38146 38070;38071;38072;38073;38074;38075;38076;38077;38078;38079;38080 38078 11 EQADFAVEALAK RIKVGRDYVQKAQTKEQADFAVEALAKATY QTKEQADFAVEALAKATYERLFRWLVHRIN K E Q A K A 4 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1290.6456 P35580 P35580 415 426 MYH10 Myosin-10 no no 2 0.00074852 61.353 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.63344 0.67315 33.538 5 Median 1.2073 1.1567 NaN 1 1 Median 0.63344 0.57759 NaN 1 0 Median 0.61146 0.67315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63216 0.66185 NaN 1 0 Median 1.354 1.1674 NaN 1 0 Median 73039000 40961000 32078000 35834000 17494000 18340000 206960 100400 106560 23965000 15462000 8502700 0 0 0 12613000 7765200 4847900 421160 139810 281350 7631 2245 7936 38147;38148;38149;38150;38151 38081;38082;38083;38084 38084 4 EQADYCVSHMKPYVDGK KPYVTKEELYQNLTREQADYCVSHMKPYVD ADYCVSHMKPYVDGKGRELPTAFDYVEFTR R E Q G K G 1 0 0 2 1 1 1 1 1 0 0 2 1 0 1 1 0 0 2 2 0 0 17 1 2025.8924 A0A0D9SF54;Q13813 Q13813 2436 2452 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 5.6743E-08 71.558 By MS/MS 2 1.276 1.2185 11.739 2 Median NaN NaN NaN 0 0 Median 1.276 1.2185 11.739 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24353000 10521000 13832000 0 0 0 24353000 10521000 13832000 0 0 0 0 0 0 0 0 0 0 0 0 7632 264;2838 7937 38152;38153 38085;38086 38086 2 EQAEAEVASLNR AERLQREVEGERRAREQAEAEVASLNRRIQ RAREQAEAEVASLNRRIQLVEEELDRAQER R E Q N R R 3 1 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1315.6368 A0A087WWU8;D6R904;A0A494C0G0 A0A087WWU8 43 54 TPM3 yes no 2 5.1064E-15 144.65 By matching By MS/MS By MS/MS 1 2 1 0.79521 0.75318 101.96 4 Median 0.87115 0.81458 NaN 1 0 Median 0.45294 0.41511 165.88 2 1 Median 0.7259 0.69641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27656000 14699000 12957000 10323000 5300100 5022700 11304000 6249900 5054200 6029600 3149100 2880600 0 0 0 0 0 0 0 0 0 7633 63 7938 38154;38155;38156;38157 38087;38088;38089 38089 3 EQAEAEVASLNRR AERLQREVEGERRAREQAEAEVASLNRRIQ AREQAEAEVASLNRRIQLVEEELDRAQERL R E Q R R I 3 2 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 1 1471.7379 A0A087WWU8;D6R904;A0A494C0G0 A0A087WWU8 43 55 TPM3 yes no 2;3 0.00012394 71.548 By MS/MS By MS/MS By matching 1 3 1 1.2907 1.2535 19.285 5 Median 1.2907 1.3895 NaN 1 0 Median 1.3618 1.2535 15.172 3 1 Median 0.85428 0.89165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23729000 9779500 13949000 5734700 2512700 3221900 14970000 5846100 9123900 3023900 1420700 1603300 0 0 0 0 0 0 0 0 0 7634 63 7939 38158;38159;38160;38161;38162 38090;38091;38092;38093;38094 38090 4 EQAELTGLR DGSLEKDRTLTPLGREQAELTGLRLASLGL LTPLGREQAELTGLRLASLGLKFNKIVHSS R E Q L R L 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1015.5298 Q96HS1 Q96HS1 126 134 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.020027 55.531 By MS/MS 1 0.76278 0.71371 NaN 1 Median 0.76278 0.71371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6723600 3415600 3308000 6723600 3415600 3308000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7635 3669 7940 38163 38095 38095 1 EQAGEAEGAQAVTQLMVDR VQNVVKLYASILQQKEQAGEAEGAQAVTQL EAEGAQAVTQLMVDRLPQFVQSADLEVQER K E Q D R L 4 1 0 1 0 3 3 2 0 0 1 0 1 0 0 0 1 0 0 2 0 0 19 0 2001.9426 O14617;A0A2R8Y611 O14617 538 556 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.00051753 51.218 By MS/MS 1 0.88396 0.88649 NaN 1 Median 0.88396 0.88649 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1310700 775220 535500 1310700 775220 535500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7636 1485 7941 38164 38096 38096 1 EQAGGDATENFEDVGHSTDAR TKFLEEHPGGEEVLREQAGGDATENFEDVG ATENFEDVGHSTDAREMSKTFIIGELHPDD R E Q A R E 3 1 1 3 0 1 3 3 1 0 0 0 0 1 0 1 2 0 0 1 0 0 21 0 2204.9206 P00167 P00167 53 73 CYB5A Cytochrome b5 yes yes 3 7.4135E-12 66.045 By MS/MS By MS/MS By MS/MS 1 2 1 1.0998 1.0085 19.085 4 Median 0.93782 0.89832 NaN 1 0 Median 1.447 1.2133 18.676 2 0 Median 0.94377 0.95664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36703000 16257000 20446000 25081000 11852000 13229000 7621600 2720700 4901000 3999600 1684000 2315600 0 0 0 0 0 0 0 0 0 7637 1812 7942 38165;38166;38167;38168 38097;38098;38099;38100;38101 38098 5 EQALAVSR PELPVPTGGPAVGAREQALAVSRNYLSQPR GPAVGAREQALAVSRNYLSQPRLTYKTVSG R E Q S R N 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 872.47158 P21281;H0YC04;H0YAT8;E5RGH6 P21281 30 37 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 2 0.012543 54.776 By MS/MS By MS/MS By matching 1 1 1 1.3204 1.1179 21.156 3 Plateau 1.1409 1.1213 NaN 1 0 Median 1.3204 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73761 0.77612 NaN 1 0 Median NaN NaN NaN 0 0 Median 6616600 2751800 3864700 957370 455340 502030 5560500 2239900 3320600 0 0 0 0 0 0 98718 56572 42146 0 0 0 7638 2086 7943 38169;38170;38171 38102;38103 38103 2 EQALSTLQLEHTSTQALVSELLPAK LGQELKAWQEKFFQKEQALSTLQLEHTSTQ HTSTQALVSELLPAKHLCQQLQAEQAAAEK K E Q A K H 3 0 0 0 0 3 3 0 1 0 6 1 0 0 1 3 3 0 0 1 0 0 25 0 2706.444 A0A087WY61;Q14980 Q14980 1340 1364 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 5.1264E-19 74.579 By MS/MS By MS/MS 1 2 0.94457 0.8422 12.694 3 Median NaN NaN NaN 0 0 Median 0.94457 0.83647 NaN 1 0 Median 0.85499 0.93842 15.299 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24000000 11180000 12820000 0 0 0 19255000 8652500 10602000 4745000 2527200 2217800 0 0 0 0 0 0 0 0 0 7639 2905;77 7944 38172;38173;38174 38104;38105;38106;38107;38108;38109 38108 6 EQDHIIIIPR WAHLANTYISVRISKEQDHIIIIPRGLSFS VRISKEQDHIIIIPRGLSFSEATASNLVKV K E Q P R G 0 1 0 1 0 1 1 0 1 4 0 0 0 0 1 0 0 0 0 0 0 0 10 0 1232.6877 Q9UEY8 Q9UEY8 168 177 ADD3 Gamma-adducin yes yes 3 0.000642 60.518 By MS/MS By MS/MS 2 1 0.67831 0.64626 26.144 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52289 0.54929 34.509 2 0 Median 0.75429 0.64626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8203000 4488600 3714400 0 0 0 0 0 0 7459000 4054400 3404500 744030 434140 309890 0 0 0 0 0 0 7640 4257 7945 38175;38176;38177 38110;38111;38112 38110 3 EQDIYLPIANVAR MNDHEDTNGSKESFREQDIYLPIANVARIM FREQDIYLPIANVARIMKNAIPQTGKIAKD R E Q A R I 2 1 1 1 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 1 0 0 13 0 1500.7936 F8VSL3;P25208 F8VSL3 55 67 NFYB Nuclear transcription factor Y subunit beta yes no 2 0.00040822 74.162 By MS/MS By matching By matching 2 1 1 0.63678 0.586 76.986 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71506 0.80557 26.702 2 0 Median NaN NaN NaN 0 0 Median 0.16481 0.16305 NaN 1 0 Median 0.58403 0.51486 NaN 1 0 Median 21578000 13153000 8424900 0 0 0 0 0 0 17833000 9854200 7978700 0 0 0 3421100 3105600 315540 323960 193330 130630 7641 1064 7946 38178;38179;38180;38181 38113;38114;38115 38115 3 EQDLQLEELR EQHDNIVTHYKNMIREQDLQLEELRQQVST KNMIREQDLQLEELRQQVSTLKCQNEQLQT R E Q L R Q 0 1 0 1 0 2 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1271.6357 O60763 O60763 661 670 USO1 General vesicular transport factor p115 yes yes 2 0.0045758 67.563 By MS/MS 1 1.354 1.1406 NaN 1 Median NaN NaN NaN 0 0 Median 1.354 1.1406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5716300 2319000 3397300 0 0 0 5716300 2319000 3397300 0 0 0 0 0 0 0 0 0 0 0 0 7642 1630 7947 38182 38116 38116 1 EQDQRPLHPVANPHAEISTK WNIFSEASNSEPVNKEQDQRPLHPVANPHA PLHPVANPHAEISTKVPASKVKDAVEQQGE K E Q T K V 2 1 1 1 0 2 2 0 2 1 1 1 0 0 3 1 1 0 0 1 0 0 20 1 2266.1454 Q9NX58 Q9NX58 149 168 LYAR Cell growth-regulating nucleolar protein yes yes 3;4;5 8.448E-09 69.763 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 1 0.66021 0.65551 15.302 12 Median NaN NaN NaN 0 0 Median 0.71269 0.65157 7.1241 3 0 Median 0.61993 0.63952 8.5443 4 0 Median 0.69852 0.66943 7.0874 2 0 Median 0.65418 0.67719 16.59 2 0 Median 1.123 1.0306 NaN 1 0 Median 76301000 44922000 31379000 0 0 0 4625800 2772400 1853400 51049000 31190000 19859000 11455000 6553400 4901200 8389100 3975500 4413600 782470 431310 351160 7643 4160 7948 38183;38184;38185;38186;38187;38188;38189;38190;38191;38192;38193;38194 38117;38118;38119;38120;38121;38122;38123;38124;38125 38118 9 EQEAGLLQFLR TVRVKALFAISCLVREQEAGLLQFLRLDGF CLVREQEAGLLQFLRLDGFSVLMRAMQQQV R E Q L R L 1 1 0 0 0 2 2 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 11 0 1302.6932 Q9NZL4;K7EN20 Q9NZL4 218 228 HSPBP1 Hsp70-binding protein 1 yes no 2 0.00014953 88.948 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1.1617 1.1547 36.36 7 Median 1.1617 1.1547 NaN 1 0 Median 1.1105 0.94874 3.0118 2 0 Median 1.2473 1.1947 NaN 1 0 Median 1.9824 1.6684 NaN 1 0 Median 1.9213 1.9729 NaN 1 0 Median 0.80731 0.67291 NaN 1 0 Median 21880000 10282000 11598000 4183700 1954700 2228900 13947000 6704300 7242400 1265500 613000 652470 102900 37242 65663 345900 101350 244560 2035200 871330 1163900 7644 4190 7949 38195;38196;38197;38198;38199;38200;38201 38126;38127;38128;38129 38128 4 EQEAREPVLAQLR YLQQLESHMKSRKAREQEAREPVLAQLRGL AREQEAREPVLAQLRGLVSTLQSATEQMAA R E Q L R G 2 2 0 0 0 2 3 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 13 1 1537.8213 Q6P2E9;I3L2F4 Q6P2E9 1163 1175 EDC4 Enhancer of mRNA-decapping protein 4 yes no 3 0.00096223 45.79 By MS/MS By MS/MS 1 1 1.0481 1.1953 29.973 2 Median 1.3816 1.4775 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.7951 0.96701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12787000 6521000 6266500 4988800 2068900 2919900 0 0 0 7798700 4452100 3346600 0 0 0 0 0 0 0 0 0 7645 3155 7950 38202;38203 38130;38131;38132 38132 3 EQEEEREAIR EREMAEQFRLEQIRKEQEEEREAIRLSLEQ EQIRKEQEEEREAIRLSLEQALPPEPKEEN K E Q I R L 1 2 0 0 0 1 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 10 1 1287.6055 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 545 554 FAF1 FAS-associated factor 1 yes no 3 0.033155 22.905 By MS/MS 1 0.99353 1.0187 NaN 1 Median 0.99353 1.0187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1362400 676780 685620 1362400 676780 685620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7646 575 7951 38204 38133 38133 1 EQEELEEALEVER ENKDVIQKNKLKLTREQEELEEALEVERQE TREQEELEEALEVERQENEQRRLFIQKEEQ R E Q E R Q 1 1 0 0 0 1 7 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 13 0 1601.7421 P51948;H0YJ92;H0YJF2 P51948 143 155 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 2 3.276E-05 91.936 By MS/MS 1 0.97094 0.9596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97094 0.9596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3633200 1662600 1970700 0 0 0 0 0 0 3633200 1662600 1970700 0 0 0 0 0 0 0 0 0 7647 2445 7952 38205 38134;38135 38135 2 EQEELNDAVGFSR DEEERKRREQQKHAKEQEELNDAVGFSRVI AKEQEELNDAVGFSRVIHAIANSGKLVIGH K E Q S R V 1 1 1 1 0 1 3 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 13 0 1492.6794 A0A494C1G3;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C0Q2;A0A494C1N1;A0A494C0K5;A0A494C0W0;O95453;A0A494C002;A0A494C156;A0A494C0Q6 A0A494C1G3 162 174 PARN Poly(A)-specific ribonuclease PARN yes no 2 0.00026154 90.653 By MS/MS By MS/MS 1 1 1.1142 1.1603 55.955 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74143 0.78116 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.6744 1.7235 NaN 1 1 Median NaN NaN NaN 0 0 Median 11784000 5320600 6463000 0 0 0 0 0 0 4017400 2292600 1724800 0 0 0 7766300 3028000 4738200 0 0 0 7648 452 7953 38206;38207 38136;38137 38137 2 EQEHMINWVEK RLDYHISVQNMMRRKEQEHMINWVEKHVVQ MRRKEQEHMINWVEKHVVQSISTQQEKETI K E Q E K H 0 0 1 0 0 1 3 0 1 1 0 1 1 0 0 0 0 1 0 1 0 0 11 0 1441.666 Q5QNZ2;P24539 Q5QNZ2 150 160 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3 0.037888 19.099 By MS/MS By matching 1 1 1.1385 1.0969 6.8366 2 Median NaN NaN NaN 0 0 Median 1.357 1.1512 NaN 1 0 Median 0.9552 1.0451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4057400 2005700 2051700 0 0 0 1978500 942460 1036100 2078800 1063200 1015700 0 0 0 0 0 0 0 0 0 7649 2124 7954 38208;38209 38138 38138 1 EQEITAVQAR AAAGEAKVKKQLVAREQEITAVQARMQASY QLVAREQEITAVQARMQASYREHVKEVQQL R E Q A R M 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1143.5884 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 752 761 RRBP1 Ribosome-binding protein 1 yes no 2 0.0011182 68.371 By MS/MS By MS/MS By MS/MS 1 1 1 1.4028 1.2888 26.264 2 Median 1.5471 1.5518 NaN 1 0 Median 1.272 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7405700 2609700 4796100 1300800 562360 738450 6104900 2047300 4057600 0 0 0 0 0 0 0 0 0 0 0 0 7650 4222 7955 38210;38211;38212 38139;38140;38141 38140 3 EQEIVASSPSLSGLK QLQFEAISDEEKTLREQEIVASSPSLSGLK EQEIVASSPSLSGLKLGFESIYKIPFADAL R E Q L K L 1 0 0 0 0 1 2 1 0 1 2 1 0 0 1 4 0 0 0 1 0 0 15 0 1543.8094 P49643 P49643 163 177 PRIM2 DNA primase large subunit yes yes 2 2.5152E-09 101.39 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.96769 0.91701 4.962 5 Median 0.92554 0.88228 8.5346 2 0 Median 1.0097 0.88165 NaN 1 0 Median 0.95727 0.92918 NaN 1 0 Median 1.067 0.91701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31344000 15314000 16030000 14158000 6580400 7577900 957530 523530 434000 14188000 7421800 6766100 2039900 788310 1251600 0 0 0 0 0 0 7651 2389 7956 38213;38214;38215;38216;38217 38142;38143;38144;38145;38146;38147 38145 6 EQEMTEMR MAGERDKFRKMLDAKEQEMTEMRDVMQQQL RKMLDAKEQEMTEMRDVMQQQLAEYQELLD K E Q M R D 0 1 0 0 0 1 3 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 8 0 1052.4267 Q03252 Q03252 357 364 LMNB2 Lamin-B2 yes yes 2 0.0032257 100.19 By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 1.0372 1.0392 19.961 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1083 1.1293 NaN 1 0 Median 1.3964 1.1655 NaN 1 0 Median 0.91572 0.95933 7.4425 3 0 Median 1.282 1.0806 43.334 2 0 Median 29789000 14260000 15529000 0 0 0 0 0 0 10808000 4814500 5993600 1561200 598660 962490 16084000 8269400 7814800 1335900 577290 758620 7652 2709 7957 38218;38219;38220;38221;38222;38223;38224 38148;38149;38150;38151;38152;38153;38154;38155;38156 38148 9 EQEPEKVDTEEDGKAEVASEK RKPKEDEVEASEKKKEQEPEKVDTEEDGKA VDTEEDGKAEVASEKLTASEQAHPQEPAES K E Q E K L 2 0 0 2 0 1 7 1 0 0 0 3 0 0 1 1 1 0 0 2 0 0 21 2 2346.0711 Q02952 Q02952 329 349 AKAP12 A-kinase anchor protein 12 yes yes 4 0.0084319 22.118 By MS/MS 1 0.99858 1.0402 NaN 1 Median NaN NaN NaN 0 0 Median 0.99858 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1992900 1114500 878460 0 0 0 1992900 1114500 878460 0 0 0 0 0 0 0 0 0 0 0 0 7653 2705 7958 38225 38157 38157 1 EQEQLDR KDMLEDKFKSNNLEREQEQLDRIVKESGGK FKSNNLEREQEQLDRIVKESGGKLTRRLVN R E Q D R I 0 1 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 916.42502 Q9NPI1 Q9NPI1 314 320 BRD7 Bromodomain-containing protein 7 yes yes 2 0.053242 38.792 By MS/MS 1 0.74764 0.78065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74764 0.78065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1092700 547040 545650 0 0 0 0 0 0 1092700 547040 545650 0 0 0 0 0 0 0 0 0 7654 4053 7959 38226 38158 38158 1 EQESAMDKHNLER SSTDQGSDEEGSLQKEQESAMDKHNLERKC QKEQESAMDKHNLERKCAMLEYTTGSREVV K E Q E R K 1 1 1 1 0 1 3 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 13 1 1585.7155 Q12789 Q12789 1077 1089 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.074678 11.614 By MS/MS 1 0.81046 0.96116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81046 0.96116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 673750 324860 348890 0 0 0 0 0 0 673750 324860 348890 0 0 0 0 0 0 0 0 0 7655 2758 7960 38227 38159 38159 1 EQETINASPIQQGGHSVISAISLPLVDQDGTTK IRQVLENNQANLASKEQETINASPIQQGGH SAISLPLVDQDGTTKIIINYSLEQPSQLQV K E Q T K I 2 0 1 2 0 4 2 3 1 4 2 1 0 0 2 4 3 0 0 2 0 0 33 0 3432.7373 P37275;H0YMD3 P37275 440 472 ZEB1 Zinc finger E-box-binding homeobox 1 yes no 3 0.016832 14.159 By MS/MS 1 0.72847 0.7852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72847 0.7852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2030000 1208000 822040 0 0 0 0 0 0 2030000 1208000 822040 0 0 0 0 0 0 0 0 0 7656 2268 7961 38228 38160 38160 1 EQEVAELKK TLDTTAAQQELRTKREQEVAELKKALEEET ELRTKREQEVAELKKALEEETKNHEAQIQD R E Q K K A 1 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 9 1 1072.5764 P35580 P35580 1173 1181 MYH10 Myosin-10 yes yes 2 0.0164 47.198 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.79868 0.817 25.97 6 Median NaN NaN NaN 0 0 Median 1.0994 1.0495 13.797 2 0 Median 0.59353 0.68341 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62472 0.68439 3.436 2 0 Median 1.2801 1.1423 NaN 1 0 Median 13097000 7332100 5764800 0 0 0 3165500 1484700 1680900 3420200 2000000 1420200 0 0 0 5848600 3552100 2296500 662610 295430 367190 7657 2245 7962 38229;38230;38231;38232;38233;38234 38161;38162;38163 38161 3 EQEVNILK TLDSTAAQQELRSKREQEVNILKKTLEEEA QELRSKREQEVNILKKTLEEEAKTHEAQIQ R E Q L K K 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 971.52876 P35579 P35579 1166 1173 MYH9 Myosin-9 yes yes 2 0.0069954 68.915 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1887 1.0674 17.475 4 Median 1.2904 1.2412 NaN 1 0 Median 0.99857 0.88355 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3402 1.2148 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0951 0.93782 NaN 1 0 Median 81468000 37401000 44067000 21995000 9463400 12532000 45130000 21405000 23725000 0 0 0 1779800 740440 1039300 0 0 0 12563000 5792400 6770500 7658 2244 7963 38235;38236;38237;38238;38239 38164;38165;38166;38167;38168;38169;38170;38171;38172 38171 9 EQEVNILKK TLDSTAAQQELRSKREQEVNILKKTLEEEA ELRSKREQEVNILKKTLEEEAKTHEAQIQE R E Q K K T 0 0 1 0 0 1 2 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 9 1 1099.6237 P35579 P35579 1166 1174 MYH9 Myosin-9 yes yes 2 0.0026536 76.774 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1955 1.0669 12.695 5 Median 1.4062 1.3663 NaN 1 0 Median 1.3161 1.2677 NaN 1 0 Median 0.90023 1.0319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97859 1.0523 NaN 1 0 Median 1.1955 1.0669 NaN 1 0 Median 26685000 11636000 15048000 8641300 3296700 5344600 5231600 2206400 3025100 1823800 932090 891690 0 0 0 7081000 3428700 3652200 3907100 1772400 2134700 7659 2244 7964 38240;38241;38242;38243;38244 38173;38174;38175;38176;38177;38178;38179;38180 38179 8 EQFESVAQLNNSLK GEKTELFCQALARKREQFESVAQLNNSLKE REQFESVAQLNNSLKEYGFTEEEEIIMEAT R E Q L K E 1 0 2 0 0 2 2 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 14 0 1605.7999 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1988 2001 SYNE2 Nesprin-2 yes no 2 4.5699E-06 94.767 By MS/MS By matching 1 1 1.1121 1.1101 14.045 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93426 1.0051 NaN 1 0 Median 1.3238 1.226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5691500 2789700 2901800 0 0 0 0 0 0 5153300 2546600 2606700 538190 243080 295110 0 0 0 0 0 0 7660 3521 7965 38245;38246 38181;38182 38181 2 EQFLDGDGWTSR GLLGLAVAEPAVYFKEQFLDGDGWTSRWIE YFKEQFLDGDGWTSRWIESKHKSDFGKFVL K E Q S R W 0 1 0 2 0 1 1 2 0 0 1 0 0 1 0 1 1 1 0 0 0 0 12 0 1409.6212 P27797;K7EJB9 P27797 25 36 CALR Calreticulin yes no 2 4.0203E-06 125.74 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 1 1.1906 1.0305 6.9878 9 Median 1.0762 1.0299 2.6718 2 1 Median 1.232 1.0324 9.6393 5 0 Median 1.0178 1.0036 NaN 1 1 Median 1.1925 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132820000 59769000 73049000 69835000 31829000 38006000 50092000 21698000 28394000 11847000 5785000 6062300 1044100 457300 586820 0 0 0 0 0 0 7661 2157 7966 38247;38248;38249;38250;38251;38252;38253;38254;38255;38256 38183;38184;38185;38186;38187;38188;38189;38190;38191;38192;38193 38187 11 EQFNEFR HEENGPEPDWVLSEREQFNEFRDLNKDGKL PDWVLSEREQFNEFRDLNKDGKLDKDEIRH R E Q F R D 0 1 1 0 0 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 968.43519 Q15293 Q15293 250 256 RCN1 Reticulocalbin-1 yes yes 2 0.00016537 150.02 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1.2419 1.2142 13.161 6 Median 1.1058 1.1052 NaN 1 0 Median 1.2437 1.084 NaN 1 0 Median 1.2401 1.344 NaN 1 0 Median 1.2803 1.1379 NaN 1 0 Median 1.2257 1.2956 NaN 1 0 Median 1.7188 1.5128 NaN 1 0 Median 47858000 20993000 26865000 20931000 9221200 11710000 18710000 8327400 10383000 5516900 2241200 3275800 1234000 512130 721890 1063900 515690 548200 401360 175340 226010 7662 2940 7967 38257;38258;38259;38260;38261;38262 38194;38195;38196;38197;38198 38196 5 EQFVEFR HDGNTDEPEWVKTEREQFVEFRDKNRDGKM PEWVKTEREQFVEFRDKNRDGKMDKEETKD R E Q F R D 0 1 0 0 0 1 2 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 7 0 953.46068 O43852;H0Y875 O43852 235 241 CALU Calumenin yes no 2 0.021907 74.415 By MS/MS 2 1.0286 1.0249 12.327 2 Median 1.0286 1.0249 12.327 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21579000 10522000 11057000 21579000 10522000 11057000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7663 1598 7968 38263;38264 38199;38200 38200 2 EQFWEQAK YQKTDAAVEMKRINREQFWEQAKKEEELRK EMKRINREQFWEQAKKEEELRKEEERKKAL R E Q A K K 1 0 0 0 0 2 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 8 0 1064.4927 Q16643;D6R9W4 Q16643 178 185 DBN1 Drebrin yes no 2 0.021869 45.335 By matching By MS/MS By matching 1 1 1 1.229 1.0756 21.977 3 Median 0.76835 0.75985 NaN 1 0 Median 1.229 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3132 1.1413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7921700 3704900 4216800 3136900 1623000 1513900 4145900 1772800 2373200 0 0 0 638880 309180 329700 0 0 0 0 0 0 7664 2991 7969 38265;38266;38267 38201 38201 1 EQGFLSFWR KQYKGIIDCVVRIPKEQGFLSFWRGNLANV VVRIPKEQGFLSFWRGNLANVIRYFPTQAL K E Q W R G 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 1 0 1 0 0 0 0 9 0 1168.5665 P12235;V9GYG0 P12235 64 72 SLC25A4 ADP/ATP translocase 1 yes no 2 0.037899 34.253 By MS/MS By matching By matching By matching By matching 3 4 2 1 1 1.4765 1.2918 18.106 11 Median 1.1969 1.1707 14.453 3 0 Median 1.5824 1.3274 5.5636 4 0 Median 1.2537 1.1867 1.4933 2 0 Median 1.8227 1.5357 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5554 2.1219 NaN 1 0 Median 25990000 10774000 15216000 17609000 7585400 10024000 7089200 2685100 4404000 1029800 405660 624130 144510 56708 87806 0 0 0 117710 41454 76258 7665 1976 7970 38268;38269;38270;38271;38272;38273;38274;38275;38276;38277;38278 38202;38203;38204 38204 3 EQGNIEEAVR PTHADSLNNLANIKREQGNIEEAVRLYRKA ANIKREQGNIEEAVRLYRKALEVFPEFAAA R E Q V R L 1 1 1 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1143.552 O15294 O15294 339 348 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.0019187 62.104 By MS/MS By MS/MS By MS/MS 1 1 1 1.2664 1.0844 4.2462 3 Median NaN NaN NaN 0 0 Median 1.2664 1.0692 NaN 1 0 Median 1.014 1.0844 NaN 1 0 Median 1.3583 1.1577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8472700 3753500 4719200 0 0 0 4952700 2231900 2720800 2297700 1040800 1256800 1222300 480720 741560 0 0 0 0 0 0 7666 1537 7971 38279;38280;38281 38205;38206;38207;38208;38209 38207 5 EQGPYETYEGSPVSK TIYYGALEASCDLAKEQGPYETYEGSPVSK EQGPYETYEGSPVSKGILQYDMWNVTPTDL K E Q S K G 0 0 0 0 0 1 3 2 0 0 0 1 0 0 2 2 1 0 2 1 0 0 15 0 1669.7471 P23921;E9PL69 P23921 549 563 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 1.298E-09 117.23 By MS/MS By MS/MS 1 1 0.83662 0.74042 7.1409 2 Median 0.7854 0.70396 NaN 1 0 Median 0.89119 0.77876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24589000 13323000 11266000 18528000 10240000 8287900 6060600 3082900 2977700 0 0 0 0 0 0 0 0 0 0 0 0 7667 2121 7972 38282;38283 38210;38211;38212;38213;38214;38215;38216 38212 7 EQGVEEHETLLLR TDDELNWLDHGRTLREQGVEEHETLLLRRK LREQGVEEHETLLLRRKFFYSDQNVDSRDP R E Q L R R 0 1 0 0 0 1 4 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 13 0 1551.7893 Q9Y490 Q9Y490 182 194 TLN1 Talin-1 yes yes 2;3 4.3111E-07 108.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 1 0.9828 0.85102 23.238 6 Median 0.76585 0.71944 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52486 0.52673 NaN 1 0 Median 1.185 1.0198 11.39 3 0 Plateau NaN NaN NaN 0 0 Median 1.04 0.84417 NaN 1 0 Median 34370000 17482000 16887000 9845400 5587400 4258000 0 0 0 4573300 2953200 1620100 18753000 8371200 10382000 0 0 0 1198000 570580 627430 7668 4441 7973 38284;38285;38286;38287;38288;38289;38290 38217;38218;38219;38220;38221;38222;38223 38217 7 EQGVEEHETLLLRR TDDELNWLDHGRTLREQGVEEHETLLLRRK REQGVEEHETLLLRRKFFYSDQNVDSRDPV R E Q R R K 0 2 0 0 0 1 4 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 14 1 1707.8904 Q9Y490 Q9Y490 182 195 TLN1 Talin-1 yes yes 3 0.0070552 40.475 By MS/MS 1 1.0016 1.0711 NaN 1 Median 1.0016 1.0711 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4653300 2645400 2007900 4653300 2645400 2007900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7669 4441 7974 38291 38224 38224 1 EQGVLSFWR KQYKGIVDCIVRIPKEQGVLSFWRGNLANV IVRIPKEQGVLSFWRGNLANVIRYFPTQAL K E Q W R G 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 9 0 1120.5665 P05141;P12236 P12236 64 72 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.0005315 117.04 By MS/MS By MS/MS By matching By matching By MS/MS By matching 9 3 2 2 1 2 1.2684 1.2561 12.823 19 Median 1.1614 1.1283 7.5367 9 0 Median 1.5511 1.3264 3.8838 3 0 Median 1.245 1.2632 3.1804 2 0 Median 1.7604 1.499 4.4417 2 0 Median 1.5166 1.5308 NaN 1 0 Median 1.7078 1.3319 8.2928 2 0 Median 476010000 208170000 267840000 371240000 165500000 205740000 49378000 20209000 29169000 22467000 9983400 12483000 1377600 496410 881220 23866000 9384600 14482000 7673200 2593700 5079500 7670 1977;1861 7975 38292;38293;38294;38295;38296;38297;38298;38299;38300;38301;38302;38303;38304;38305;38306;38307;38308;38309;38310 38225;38226;38227;38228;38229;38230;38231;38232;38233;38234;38235;38236;38237;38238;38239;38240;38241;38242;38243 38228 19 EQGVTFPSGDIQEQLIR YATILNAGTNTDGFKEQGVTFPSGDIQEQL GVTFPSGDIQEQLIRSLYQSAGVAPESFEY K E Q I R S 0 1 0 1 0 3 2 2 0 2 1 0 0 1 1 1 1 0 0 1 0 0 17 0 1915.964 P49327;A0A0U1RQF0 P49327 258 274 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 9.3121E-14 119.01 By MS/MS By MS/MS By matching By matching 2 3 2 2 1.025 0.90312 15.258 9 Median 0.89631 0.86615 5.7198 2 0 Median 1.1749 0.99158 4.122 3 0 Median 0.71135 0.78822 4.5417 2 0 Median 1.2219 1.0682 23.747 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47567000 24178000 23389000 30239000 15860000 14379000 13067000 6056400 7010900 3466500 1900100 1566400 794070 362120 431950 0 0 0 0 0 0 7671 2377 7976 38311;38312;38313;38314;38315;38316;38317;38318;38319 38244;38245;38246;38247;38248;38249;38250;38251 38249 8 EQGYDVIAYLANIGQK YSGGLDTSCILVWLKEQGYDVIAYLANIGQ QGYDVIAYLANIGQKEDFEEARKKALKLGA K E Q Q K E 2 0 1 1 0 2 1 2 0 2 1 1 0 0 0 0 0 0 2 1 0 0 16 0 1780.8996 P00966;Q5T6L5;Q5T6L6 P00966 26 41 ASS1 Argininosuccinate synthase yes no 2 0.0043619 34.378 By matching By MS/MS By matching 1 2 1 1.0953 1.0366 9.3109 4 Median 0.94956 0.93475 NaN 1 0 Median 1.2573 1.0876 10.104 2 0 Median 1.015 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3205500 1481300 1724200 286500 140240 146270 2614400 1208500 1405800 304630 132560 172070 0 0 0 0 0 0 0 0 0 7672 1828 7977 38320;38321;38322;38323 38252 38252 1 EQHLAQLQQLQQMHQK TTPAAPSSSGFMSFREQHLAQLQQLQQMHQ QHLAQLQQLQQMHQKQMQCVLQPHHLPPPP R E Q Q K Q 1 0 0 0 0 7 1 0 2 0 3 1 1 0 0 0 0 0 0 0 0 0 16 0 1987.0058 P49750;F8VU51 P49750 55 70 YLPM1 YLP motif-containing protein 1 yes no 3 2.4077E-20 132.08 By MS/MS 1 5.1228 5.6142 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.1228 5.6142 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91354000 16735000 74618000 0 0 0 0 0 0 91354000 16735000 74618000 0 0 0 0 0 0 0 0 0 7673 2395 7978 38324 38253 38253 1 EQHPDMSVTR IDHDQALAQAIREAREQHPDMSVTRVVVHK IREAREQHPDMSVTRVVVHKETELAEEGED R E Q T R V 0 1 0 1 0 1 1 0 1 0 0 0 1 0 1 1 1 0 0 1 0 0 10 0 1198.5401 O43491;E9PHY5;E9PK52;E9PII3;Q6ZSX4;Q6R5J7;E9PPC9 O43491 981 990 EPB41L2 Band 4.1-like protein 2 yes no 2;3 0.004002 58.676 By MS/MS 2 1.002 0.86393 5.7933 2 Median NaN NaN NaN 0 0 Median 1.002 0.86393 5.7933 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184100 1816700 1367400 0 0 0 3184100 1816700 1367400 0 0 0 0 0 0 0 0 0 0 0 0 7674 1573 7979 38325;38326 38254;38255;38256 38255 3 EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLKK TDMLHSKLSQLRESREQHQHSDLDSNQTHS VTSSSSTANIDDLKKRLERIKSSRK_____ R E Q K K R 1 0 2 4 0 3 1 1 3 1 2 2 0 0 0 8 4 0 0 1 0 0 33 1 3553.6153 Q14008 Q14008 1990 2022 CKAP5 Cytoskeleton-associated protein 5 yes yes 4;5 6.1198E-06 34.829 By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 1.0545 1.0111 38.689 8 Median 0.82243 0.78775 12.902 2 0 Median 1.0582 1.0268 NaN 1 0 Median 1.2299 1.4208 33.05 3 0 Median 0.9609 0.90501 13.481 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86933000 40636000 46297000 13343000 7100300 6242600 1953400 1064200 889230 56457000 25043000 31414000 15180000 7428900 7751000 0 0 0 0 0 0 7675 2850 7980 38327;38328;38329;38330;38331;38332;38333;38334 38257;38258;38259;38260;38261;38262;38263;38264;38265;38266;38267 38258 11 EQIGKVDEIFGQLR NKVPYFNAPVYLENKEQIGKVDEIFGQLRD KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K E Q L R D 0 1 0 1 0 2 2 2 0 2 1 1 0 1 0 0 0 0 0 1 0 0 14 1 1630.8679 Q9NY12 Q9NY12 108 121 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 3 0.032989 19.323 By MS/MS By matching By matching 1 1 1 0.98543 1.0135 12.717 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98543 1.0135 NaN 1 0 Median 0.93126 0.82436 NaN 1 0 Median 0.98931 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median 3236800 1476700 1760100 0 0 0 0 0 0 2304000 1109800 1194200 62667 27083 35583 870140 339800 530340 0 0 0 7676 4171 7981 38335;38336;38337 38268 38268 1 EQIKLDEGWVPLEIMIK YYFGDFNLPRDKFLKEQIKLDEGWVPLEIM IKLDEGWVPLEIMIKFNRLNRLTTDFNVIV K E Q I K F 0 0 0 1 0 1 3 1 0 3 2 2 1 0 1 0 0 1 0 1 0 0 17 1 2040.0965 P05455;E7ERC4;E9PFL9 P05455 38 54 SSB Lupus La protein yes no 2 0.019807 32.062 By MS/MS 1 1.0472 0.98709 NaN 1 Median NaN NaN NaN 0 0 Median 1.0472 0.98709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1104700 592270 512390 0 0 0 1104700 592270 512390 0 0 0 0 0 0 0 0 0 0 0 0 7677 1867 7982 38338 38269 38269 1 EQILEEFSK NNRLFVGSIPKSKTKEQILEEFSKVTEGLT PKSKTKEQILEEFSKVTEGLTDVILYHQPD K E Q S K V 0 0 0 0 0 1 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1121.5605 B7Z645;O60506 O60506 257 265 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0027555 76.221 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 2 3 1.174 0.98626 43.39 12 Median 1.0335 0.96974 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0529 1.0409 53.14 2 1 Median 1.2858 1.0881 11.576 4 0 Median 0.40632 0.40122 3.3395 2 2 Median 1.1645 0.94988 25.574 3 0 Median 87434000 46866000 40568000 12176000 5464500 6711400 0 0 0 29766000 14983000 14783000 16439000 6543200 9895800 21834000 16720000 5113900 7218400 3155100 4063300 7678 1619;634 7983 38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350 38270;38271;38272;38273;38274;38275 38272 6 EQILGDEAR GHWLGLLNADGWIGREQILGDEARARVPPE DGWIGREQILGDEARARVPPEFLVQRAVHA R E Q A R A 1 1 0 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1029.5091 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 487 495 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.003016 68.016 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.4257 1.2354 31.68 5 Median 1.1149 1.0861 NaN 1 0 Median 1.8915 1.7061 45.651 2 0 Median 1.0415 1.1178 NaN 1 1 Median 1.5256 1.3134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11077000 4194500 6882700 3086300 1344200 1742100 5369100 1700700 3668300 1454500 661920 792590 1167300 487670 679660 0 0 0 0 0 0 7679 2835 7984 38351;38352;38353;38354;38355 38276;38277;38278;38279;38280;38281 38279 6 EQISDIDDAVR RKGISLNPEQWSQLKEQISDIDDAVRKL__ SQLKEQISDIDDAVRKL_____________ K E Q V R K 1 1 0 3 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1259.5994 P53999 P53999 115 125 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 0.00011336 127.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 2 1.2044 1.0275 11.239 11 Median 1.1204 1.0504 NaN 1 0 Median 1.2327 1.0332 16.947 2 0 Median 1.1431 1.1467 7.2356 2 0 Median 1.2367 1.0275 8.5984 3 0 Plateau 1.1628 1.2306 NaN 1 0 Median 1.2672 0.97168 1.2382 2 0 Median 278830000 123890000 154940000 90236000 42059000 48177000 16396000 6843000 9552900 143260000 62480000 80778000 9158100 3793400 5364700 14517000 6488900 8028200 5264100 2229200 3034900 7680 2478 7985 38356;38357;38358;38359;38360;38361;38362;38363;38364;38365;38366 38282;38283;38284;38285;38286;38287;38288;38289;38290;38291;38292;38293;38294;38295;38296;38297;38298;38299;38300;38301 38291 20 EQIVPKPEEEVAQK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK KEQIVPKPEEEVAQKKK_____________ K E Q Q K K 1 0 0 0 0 2 4 0 0 1 0 2 0 0 2 0 0 0 0 2 0 0 14 1 1622.8516 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 167 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 7.0461E-09 110.51 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 0.79704 0.76496 20.67 10 Median 0.76413 0.77641 2.102 2 0 Median 0.77736 0.70879 7.3405 2 0 Median 0.62038 0.63581 26.152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99062 0.85975 19.717 4 0 Median 126990000 67188000 59797000 35405000 19759000 15646000 41547000 22248000 19299000 5727000 3465700 2261400 0 0 0 0 0 0 44306000 21716000 22591000 7681 67 7986 38367;38368;38369;38370;38371;38372;38373;38374;38375;38376 38302;38303;38304;38305;38306;38307;38308;38309;38310;38311;38312;38313;38314;38315;38316;38317;38318;38319 38310 18 EQIVPKPEEEVAQKK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK EQIVPKPEEEVAQKKK______________ K E Q K K K 1 0 0 0 0 2 4 0 0 1 0 3 0 0 2 0 0 0 0 2 0 0 15 2 1750.9465 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 154 168 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 3;4 0.0040857 27.208 By MS/MS By matching By matching 2 1 1 0.76658 0.72715 6.8698 4 Median NaN NaN NaN 0 0 Median 0.70592 0.69079 6.4817 2 0 Median NaN NaN NaN 0 0 Median 0.79515 0.73113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83264 0.77961 NaN 1 0 Median 7311400 3908300 3403100 0 0 0 5174100 2787200 2386900 0 0 0 401220 219410 181800 0 0 0 1736100 901710 834390 7682 67 7987 38377;38378;38379;38380 38320;38321;38322 38322 3 EQIYDVYR LVLDEADEMLNKGFKEQIYDVYRYLPPATQ MLNKGFKEQIYDVYRYLPPATQVVLISATL K E Q Y R Y 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 2 1 0 0 8 0 1084.5189 P38919;I3L3H2 P38919 199 206 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0029868 102.72 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 1 1.202 1.1855 4.6975 8 Median NaN NaN NaN 0 0 Median 1.397 1.2011 NaN 1 0 Median 1.1646 1.1956 0.32106 2 0 Median 1.3709 1.1782 NaN 1 0 Median 1.1365 1.1674 3.4968 3 0 Median 1.3048 1.051 NaN 1 0 Median 112910000 48967000 63940000 0 0 0 2397400 562570 1834800 45229000 20006000 25223000 32046000 13898000 18148000 28802000 12727000 16075000 4431800 1772700 2659200 7683 2278 7988 38381;38382;38383;38384;38385;38386;38387;38388 38323;38324;38325;38326;38327;38328;38329;38330;38331 38324 9 EQKYEDGIALLR DYIKAVVKKAELLSREQKYEDGIALLRNAL LSREQKYEDGIALLRNALANQSDCVLHRIL R E Q L R N 1 1 0 1 0 1 2 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 1 1433.7514 Q9UJX3;H0YIW2 Q9UJX3 489 500 ANAPC7 Anaphase-promoting complex subunit 7 yes no 3 0.0011304 45.879 By MS/MS 1 0.8142 0.91169 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8142 0.91169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7325200 3844000 3481200 0 0 0 0 0 0 7325200 3844000 3481200 0 0 0 0 0 0 0 0 0 7684 4301 7989 38389 38332;38333 38333 2 EQLAIAEFAR LSIYLENYATSMGSREQLAIAEFARSLLVI SMGSREQLAIAEFARSLLVIPNTLAVNAAQ R E Q A R S 3 1 0 0 0 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 10 0 1146.6033 P17987;E7EQR6;F5H282 P17987 434 443 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00057839 108.98 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1.1662 1.0291 40.067 9 Median 1.0893 1.0404 55.235 4 0 Median 1.1916 1.0291 21.307 3 0 Plateau 1.1874 1.1803 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3986 1.4098 NaN 1 0 Median NaN NaN NaN 0 0 Median 151330000 67270000 84060000 96382000 42229000 54153000 32153000 14388000 17765000 20231000 9437700 10793000 0 0 0 2564000 1215400 1348600 0 0 0 7685 2051 7990 38390;38391;38392;38393;38394;38395;38396;38397;38398 38334;38335;38336;38337;38338;38339;38340;38341;38342 38334 9 EQLAQAVAR PPSVNRTEIVFTGEKEQLAQAVARIKKIYE VFTGEKEQLAQAVARIKKIYEEKKKKTTTI K E Q A R I 3 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 984.53524 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 275 283 HDLBP Vigilin yes no 2 0.0016236 79.469 By matching By MS/MS 1 1 1.1998 1.0955 2.874 2 Median 1.0788 1.0735 NaN 1 0 Median 1.3343 1.118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9186300 4044300 5142100 500280 260220 240050 8686100 3784100 4902000 0 0 0 0 0 0 0 0 0 0 0 0 7686 4 7991 38399;38400 38343;38344 38344 2 EQLDAELLR ALSPRYLNRKRTGIREQLDAELLRYSESLL KRTGIREQLDAELLRYSESLLGVPIAYDNI R E Q L R Y 1 1 0 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1085.5717 Q3B726 Q3B726 73 81 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 0.00063785 107.9 By MS/MS 2 0.64521 0.67537 49.272 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64521 0.67537 49.272 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19919000 11521000 8397400 0 0 0 0 0 0 19919000 11521000 8397400 0 0 0 0 0 0 0 0 0 7687 3009 7992 38401;38402 38345;38346;38347 38347 3 EQLDIHDSLGSQAYSNK QEVSKESKRQLQCAKEQLDIHDSLGSQAYS LDIHDSLGSQAYSNKYLTMLQTQQKSLQAL K E Q N K Y 1 0 1 2 0 2 1 1 1 1 2 1 0 0 0 3 0 0 1 0 0 0 17 0 1903.8912 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2997 3013 DST Dystonin yes no 3 0.003105 26.412 By matching By MS/MS By matching 1 1 1 1.192 1.2309 19.694 3 Median 0.89608 0.89489 NaN 1 0 Median 1.4116 1.2309 NaN 1 0 Median 1.192 1.2823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16515000 7960700 8554700 7050600 4102900 2947800 4281200 1413800 2867400 5183500 2444000 2739500 0 0 0 0 0 0 0 0 0 7688 934 7993 38403;38404;38405 38348 38348 1 EQLDMAGAR DELQENARETELELREQLDMAGARVREAQK TELELREQLDMAGARVREAQKRVEAAQETV R E Q A R V 2 1 0 1 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 989.46003 E7EX90;Q14203;Q6AWB1 E7EX90 470 478 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.0048762 59.35 By MS/MS 1 1.2697 1.0646 NaN 1 Median NaN NaN NaN 0 0 Median 1.2697 1.0646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8139700 3595400 4544300 0 0 0 8139700 3595400 4544300 0 0 0 0 0 0 0 0 0 0 0 0 7689 906 7994 38406 38349 38349 1 EQLDNQLDAYMSK RGRGRGALARPVLTKEQLDNQLDAYMSKTK TKEQLDNQLDAYMSKTKGHLDAELDAYMAQ K E Q S K T 1 0 1 2 0 2 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 13 0 1553.7032 X6R700;Q9Y3Y2 X6R700 189 201 CHTOP Chromatin target of PRMT1 protein yes no 2 0.00042159 84.658 By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 1.1545 1.1365 14.759 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0868 1.0193 4.9287 3 2 Plateau 1.4478 1.1986 28.713 2 0 Median 1.1361 1.1573 2.5148 3 0 Median 1.5053 1.2502 10.235 2 0 Median 70925000 33721000 37204000 0 0 0 0 0 0 27534000 13544000 13990000 799310 291570 507740 38330000 17998000 20332000 4262200 1887200 2375000 7690 4435 7995;7996 38407;38408;38409;38410;38411;38412;38413;38414;38415;38416 38350;38351;38352;38353;38354;38355;38356;38357;38358;38359 38351 1985 10 EQLEEEAAAR GSRVRAMEAEAAGLREQLEEEAAARERAGR AAGLREQLEEEAAARERAGRELQTAQAQLS R E Q A R E 3 1 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1144.536 Q7Z406;A0A0C4DFM8;A1L2Z2 Q7Z406 1367 1376 MYH14 Myosin-14 yes no 2 0.013584 56.432 By MS/MS 1 0.34294 0.28914 NaN 1 Median NaN NaN NaN 0 0 Median 0.34294 0.28914 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2199000 1654900 544180 0 0 0 2199000 1654900 544180 0 0 0 0 0 0 0 0 0 0 0 0 7691 3242 7997 38417 38360 38360 1 EQLEEEEEAK STKLKQVEDEKNSFREQLEEEEEAKHNLEK KNSFREQLEEEEEAKHNLEKQIATLHAQVA R E Q A K H 1 0 0 0 0 1 6 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1232.5408 P35579 P35579 1343 1352 MYH9 Myosin-9 yes yes 2 0.00035294 124.23 By MS/MS By MS/MS 2 1 1.1814 1.0258 7.9724 3 Median NaN NaN NaN 0 0 Median 1.123 0.98542 5.6793 2 0 Median NaN NaN NaN 0 0 Median 1.2222 1.1103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8893300 4062900 4830400 0 0 0 8190300 3786800 4403400 0 0 0 703020 276030 426990 0 0 0 0 0 0 7692 2244 7998 38418;38419;38420 38361;38362;38363;38364 38362 4 EQLEEEEEAKHNLEK STKLKQVEDEKNSFREQLEEEEEAKHNLEK EQLEEEEEAKHNLEKQIATLHAQVADMKKK R E Q E K Q 1 0 1 0 0 1 7 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 15 1 1853.8643 P35579 P35579 1343 1357 MYH9 Myosin-9 yes yes 2;3;4 5.2575E-08 146.07 By MS/MS By MS/MS By MS/MS By MS/MS 3 7 2 2 1.0673 1.0697 21.055 14 Median 1.1114 1.0364 6.8564 3 0 Median 1.025 0.96537 29.336 7 0 Median 0.93982 1.0866 1.7063 2 0 Median 1.2801 1.1997 16.726 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 240770000 110040000 130730000 83022000 35199000 47823000 137600000 65427000 72170000 16354000 7736100 8617900 3798500 1676600 2121800 0 0 0 0 0 0 7693 2244 7999 38421;38422;38423;38424;38425;38426;38427;38428;38429;38430;38431;38432;38433;38434 38365;38366;38367;38368;38369;38370;38371;38372;38373;38374;38375;38376;38377;38378;38379;38380;38381;38382 38380 18 EQLFAVSHDK HFLYGLSDEMKQAHREQLFAVSHDKLLAVS KQAHREQLFAVSHDKLLAVSDRYLGTGKST R E Q D K L 1 0 0 1 0 1 1 0 1 0 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1172.5826 Q5JRX3;A0A0A0MRX9 Q5JRX3 991 1000 PITRM1 Presequence protease, mitochondrial yes no 2 0.003357 70.1 By MS/MS 1 1.5067 1.2784 NaN 1 Median NaN NaN NaN 0 0 Median 1.5067 1.2784 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7126300 2772700 4353600 0 0 0 7126300 2772700 4353600 0 0 0 0 0 0 0 0 0 0 0 0 7694 3050 8000 38435 38383 38383 1 EQLFLLK E Q L K 0 0 0 0 0 1 1 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 889.5273 REV__F5H7P8 yes no 2 0.033693 48.174 By MS/MS 1 0.89112 0.83251 NaN 1 Median 0.89112 0.83251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6202200 3831700 2370500 6202200 3831700 2370500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 7695 4519 8001 38436 38384 38384 1 EQLGEEIDSK SIEMPNISYAWKELKEQLGEEIDSKVKGMV WKELKEQLGEEIDSKVKGMVFLKGKLGVCF K E Q S K V 0 0 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q9NR30 Q9NR30 659 668 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00034968 84.213 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2228 1.1146 12.12 5 Median NaN NaN NaN 0 0 Median 1.1519 1.0135 NaN 1 0 Median 1.2252 1.3339 NaN 1 0 Median 1.1931 1.0329 NaN 1 0 Median 1.2228 1.2606 NaN 1 0 Median 1.3374 1.1146 NaN 1 0 Median 30386000 12723000 17663000 0 0 0 3007400 1317500 1689900 13557000 5729800 7827200 7395800 3162200 4233600 5643300 2271700 3371500 782490 242100 540390 7696 4076 8002 38437;38438;38439;38440;38441 38385;38386;38387;38388;38389;38390;38391;38392 38385 8 EQLHLVMQGDVIR LCFRLLGAALPLLTKEQLHLVMQGDVIRHY TKEQLHLVMQGDVIRHYGEHVCTAKLPKQF K E Q I R H 0 1 0 1 0 2 1 1 1 1 2 0 1 0 0 0 0 0 0 2 0 0 13 0 1536.8082 Q9BQG0;I3L1L3 Q9BQG0 319 331 MYBBP1A Myb-binding protein 1A yes no 2;3 1.0694E-05 89.548 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.0718 1.1479 22.227 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0579 1.163 1.8489 2 0 Median 1.1257 0.99197 30.018 3 0 Median 1.2619 1.3193 NaN 1 0 Median 1.0587 0.87035 NaN 1 0 Median 47885000 23836000 24049000 0 0 0 0 0 0 37127000 19197000 17930000 5257500 2430800 2826700 4957900 1948600 3009400 542840 259660 283170 7697 3789 8003;8004 38442;38443;38444;38445;38446;38447;38448;38449 38393;38394;38395;38396 38395 1829 4 EQLIIPQVPLFNILAK LTLDLPTAPLYKDEKEQLIIPQVPLFNILA QLIIPQVPLFNILAKFNGITEKEYKTYKEN K E Q A K F 1 0 1 0 0 2 1 0 0 3 3 1 0 1 2 0 0 0 0 1 0 0 16 0 1835.0921 B9A018;Q53GS9;A0A087X1B2 B9A018 406 421 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 3.2026E-05 82.171 By matching By MS/MS By MS/MS By matching By matching 1 2 1 2 1 0.74832 0.75861 8.3029 7 Median 0.95124 0.91498 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73732 0.75464 0.74209 2 0 Median 0.95913 0.81808 NaN 1 0 Median 0.72406 0.73461 0.27078 2 0 Median 0.94684 0.8399 NaN 1 0 Median 23671000 12851000 10820000 3198600 1614700 1583900 0 0 0 17975000 9994500 7980200 2117900 1043700 1074100 352060 188180 163880 28210 10000 18209 7698 654 8005 38450;38451;38452;38453;38454;38455;38456 38397;38398;38399;38400;38401 38398 5 EQLKEELNENQSTPK NSFLESQKREYKLRKEQLKEELNENQSTPK EQLKEELNENQSTPKKEKQEWLSKQKENIQ K E Q P K K 0 0 2 0 0 2 4 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 15 1 1785.8745 Q7L7X3 Q7L7X3 564 578 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 2;3 0.0013231 55.401 By MS/MS By MS/MS 1 2 0.91411 0.95441 34.132 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0616 1.2149 NaN 1 0 Median 0.78709 0.74976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5728500 2803500 2925000 0 0 0 0 0 0 2932100 1384700 1547500 2796400 1418900 1377500 0 0 0 0 0 0 7699 3227 8006 38457;38458;38459 38402;38403;38404 38403 3 EQLLGVQQHLSNTLK EQRYMDLAENARFEREQLLGVQQHLSNTLK EQLLGVQQHLSNTLKMAEQDNKEAQEMIGA R E Q L K M 0 0 1 0 0 3 1 1 1 0 4 1 0 0 0 1 1 0 0 1 0 0 15 0 1706.9315 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 526 540 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 3 9.5934E-05 57.328 By matching By MS/MS 1 1 0.7977 0.77088 9.5694 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66411 0.72045 NaN 1 0 Median 0.95817 0.82485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8748300 4569700 4178600 0 0 0 0 0 0 4781400 2596200 2185200 3966900 1973500 1993500 0 0 0 0 0 0 7700 469 8007 38460;38461 38405;38406 38405 2 EQLLQSNPVLEAFGNAK VAAVCGKGAEVNQVKEQLLQSNPVLEAFGN LLQSNPVLEAFGNAKTVRNDNSSRFGKYMD K E Q A K T 2 0 2 0 0 2 2 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 17 0 1856.9632 E9PDF6;O43795;C9JYW1;E7EQD9;Q9UBC5 E9PDF6 140 156 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 2 0.00064738 39.266 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.85978 0.82844 5.6907 5 Median 0.86167 0.87028 NaN 1 0 Median 0.97101 0.86897 NaN 1 0 Median 0.74705 0.79847 NaN 1 0 Median 0.85978 0.76196 NaN 1 0 Median 0.80557 0.82844 NaN 1 0 Median NaN NaN NaN 0 0 Median 3640300 1839700 1800600 1164200 560290 603860 551710 227650 324060 1392700 734890 657840 84875 43708 41167 446790 273120 173670 0 0 0 7701 914 8008 38462;38463;38464;38465;38466 38407;38408 38407 2 EQLMASDDFGR FNRDVDETISWIKEKEQLMASDDFGRDLAS IKEKEQLMASDDFGRDLASVQALLRKHEGL K E Q G R D 1 1 0 2 0 1 1 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 11 0 1267.5503 A0A0D9SF54;Q13813 Q13813 275 285 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00015911 114.5 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.0882 1.0543 20.669 5 Median 1.2459 1.2348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96727 1.0543 NaN 1 0 Median 1.3615 1.1836 30.251 2 0 Median 0.83094 0.87286 NaN 1 0 Median NaN NaN NaN 0 0 Median 24723000 11646000 13076000 2643800 1148700 1495100 0 0 0 17031000 8401400 8629500 1958100 749810 1208300 3090100 1346600 1743500 0 0 0 7702 264;2838 8009;8010 38467;38468;38469;38470;38471 38409;38410;38411 38410 121 3 EQLMSQEER LDFPRRPPWSYEMSKEQLMSQEERSFQDYL SYEMSKEQLMSQEERSFQDYLGKIHGAYSS K E Q E R S 0 1 0 0 0 2 3 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 9 0 1148.5132 P36915;A2AB27 P36915 142 150 GNL1 Guanine nucleotide-binding protein-like 1 yes no 2 0.0020346 74.92 By MS/MS By MS/MS 2 1 1.2367 1.1586 23.833 2 Median 1.3533 1.3712 NaN 1 0 Median 1.1301 0.97889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3241400 1465800 1775600 941130 417530 523600 2300300 1048300 1252000 0 0 0 0 0 0 0 0 0 0 0 0 7703 2263 8011 38472;38473;38474 38412;38413;38414 38413 3 EQLMTVLQAGK SEEEERDGDVDQGFREQLMTVLQAGKALGG QGFREQLMTVLQAGKALGGEDSENEEELGD R E Q G K A 1 0 0 0 0 2 1 1 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1216.6486 Q9BQG0;I3L1L3;I3L311 Q9BQG0 758 768 MYBBP1A Myb-binding protein 1A yes no 2 0.00014249 98.249 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1.2531 1.2411 14.94 8 Median NaN NaN NaN 0 0 Median 1.2149 1.0476 NaN 1 0 Median 1.2668 1.3519 NaN 1 0 Median 1.4282 1.2543 23.523 2 0 Median 1.2781 1.3296 6.9719 2 0 Median 1.2928 1.0945 15.015 2 0 Median 36743000 16792000 19951000 0 0 0 3742500 1650700 2091900 15114000 6637400 8476400 3354200 1385300 1968900 13068000 6484300 6583400 1464700 633980 830690 7704 3789 8012 38475;38476;38477;38478;38479;38480;38481;38482 38415;38416;38417;38418;38419;38420 38417 6 EQLPIFK SCPKKPVSSYLRFSKEQLPIFKAQNPDAKT SSYLRFSKEQLPIFKAQNPDAKTTELIRRI K E Q F K A 0 0 0 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 7 0 873.496 Q00059;H7BYN3 Q00059 63 69 TFAM Transcription factor A, mitochondrial yes no 2 0.027697 51.572 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1.0668 0.95484 9.5105 6 Median 0.88983 0.82854 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94078 0.88235 NaN 1 0 Median 1.2227 1.0131 NaN 1 0 Median 0.89387 0.91307 NaN 1 0 Median 1.2648 1.031 4.5248 2 0 Median 80228000 40092000 40135000 7669300 4318500 3350700 0 0 0 34662000 17095000 17568000 3868800 1750100 2118700 23534000 12078000 11456000 10493000 4850800 5642100 7705 2673 8013 38483;38484;38485;38486;38487;38488 38421;38422;38423;38424;38425;38426 38425 6 EQLQLLEEQHR RQQEELLAEENQRLREQLQLLEEQHRAALA QRLREQLQLLEEQHRAALAHSEEVTASQVA R E Q H R A 0 1 0 0 0 3 3 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1421.7263 Q15149;H0YDN1 Q15149 2733 2743 PLEC Plectin yes no 3 0.0031997 46.592 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.98796 0.83206 19.539 5 Median 0.82979 0.83206 NaN 1 0 Median 1.3121 1.0768 NaN 1 0 Median 1.0522 1.1519 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.69078 0.72436 NaN 1 0 Median 0.98796 0.8288 NaN 1 0 Median 19392000 9967600 9423900 4776300 2951900 1824400 8377600 3640000 4737500 3199300 1756600 1442700 0 0 0 2262900 1252200 1010700 775460 366880 408580 7706 2933 8014 38489;38490;38491;38492;38493 38427;38428;38429 38427 2 EQLQTIYGAYLEPVLHK FTSIVRLCSIDYPEREQLQTIYGAYLEPVL LQTIYGAYLEPVLHKNLKNHSIWGSSSKIY R E Q H K N 1 0 0 0 0 2 2 1 1 1 3 1 0 0 1 0 1 0 2 1 0 0 17 0 2001.0571 Q8NCM8 Q8NCM8 2436 2452 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.01406 20.939 By MS/MS 1 0.90715 0.79062 NaN 1 Median NaN NaN NaN 0 0 Median 0.90715 0.79062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259700 1455800 1803800 0 0 0 3259700 1455800 1803800 0 0 0 0 0 0 0 0 0 0 0 0 7707 3418 8015 38494 38430;38431 38430 2 EQLSAERQEQIK VRELKTKISAMKEEKEQLSAERQEQIKQRT EEKEQLSAERQEQIKQRTKLELKAKDLQDE K E Q I K Q 1 1 0 0 0 3 3 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1457.7474 Q9UQE7 Q9UQE7 289 300 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.044225 18.577 By matching By MS/MS 1 1 0.8337 0.95207 10.754 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89241 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77885 0.88235 NaN 1 0 Median NaN NaN NaN 0 0 Median 1556900 967110 589810 0 0 0 0 0 0 316110 194680 121430 0 0 0 1240800 772440 468370 0 0 0 7708 4362 8016 38495;38496 38432 38432 1 EQLSDMMMINK QDVVSHSKKLTKKNKEQLSDMMMINKQKGG KKNKEQLSDMMMINKQKGGLKALSKEKREK K E Q N K Q 0 0 1 1 0 1 1 0 0 1 1 1 3 0 0 1 0 0 0 0 0 0 11 0 1338.5982 P46940;A0A0J9YXZ5;H0YLE8 P46940 943 953 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0059131 65.347 By MS/MS 1 1.1871 1.1402 NaN 1 Median 1.1871 1.1402 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5002500 2375800 2626700 5002500 2375800 2626700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7709 2350 8017 38497 38433 38433 1 EQLSLPAEFPDK LMNSFGFPQYVKIFKEQLSLPAEFPDKVFA IFKEQLSLPAEFPDKVFAEKWNENVQYLSE K E Q D K V 1 0 0 1 0 1 2 0 0 0 2 1 0 1 2 1 0 0 0 0 0 0 12 0 1372.6874 O43929 O43929 232 243 ORC4 Origin recognition complex subunit 4 yes yes 2 0.060737 41.704 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7710 1602 8018 38498 38434 38434 1 EQLSSANHSLQLASQIQK NQRAEVAQREAETLREQLSSANHSLQLASQ SSANHSLQLASQIQKAPDVEQAIEVLTRSS R E Q Q K A 2 0 1 0 0 4 1 0 1 1 3 1 0 0 0 4 0 0 0 0 0 0 18 0 1981.0229 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 266 283 CUX1 Protein CASP no no 3 1.3624E-06 63.691 By MS/MS By MS/MS 2 2 1.1715 1.1092 12.274 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1226 1.2342 9.1815 2 1 Median 1.1715 1.026 5.1122 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47885000 21225000 26660000 0 0 0 0 0 0 34703000 15258000 19445000 13182000 5967000 7215000 0 0 0 0 0 0 7711 388;2847 8019 38499;38500;38501;38502 38435;38436;38437;38438;38439;38440 38436 6 EQLTPSQIMSLEK RAEWQVYKEEISRFKEQLTPSQIMSLEKEI FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK K E Q E K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 1 2 1 0 0 0 0 0 13 0 1502.765 Q00059;H7BYN3 Q00059 119 131 TFAM Transcription factor A, mitochondrial yes no 2 0.0010862 59.57 By MS/MS By matching By MS/MS By matching 2 1 1 2 0.91902 0.89177 11.847 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89405 0.8419 3.7321 2 1 Median 1.265 1.0429 NaN 1 0 Median 0.8997 0.91999 NaN 1 0 Median 1.0193 0.83358 16.796 2 0 Median 21924000 10794000 11130000 0 0 0 0 0 0 12798000 6507700 6290100 516430 224530 291900 5176200 2466800 2709400 3433000 1594900 1838200 7712 2673 8020;8021 38503;38504;38505;38506;38507;38508 38441;38442;38443;38444;38445 38442 1350 5 EQLWLANEGLITR EIQSSISGVTAAYNREQLWLANEGLITRLQ NREQLWLANEGLITRLQARCRGYLVRQEFR R E Q T R L 1 1 1 0 0 1 2 1 0 1 3 0 0 0 0 0 1 1 0 0 0 0 13 0 1541.8202 P46940;A0A0J9YXZ5;H0YLE8;A0A087WWP1 P46940 739 751 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.4307E-07 110.66 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 2 1 2 1.072 0.97916 13.489 9 Median 0.95517 0.94729 11.618 4 0 Median 1.1662 1.002 5.8929 2 0 Median 1.1817 1.3062 NaN 1 1 Median 1.072 0.93772 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1604 0.97916 NaN 1 0 Median 77097000 36541000 40557000 58196000 27982000 30215000 14238000 6494400 7743600 4122400 1785900 2336500 246290 120780 125500 0 0 0 294450 157860 136590 7713 2350 8022 38509;38510;38511;38512;38513;38514;38515;38516;38517;38518;38519 38446;38447;38448;38449;38450;38451;38452;38453;38454;38455;38456;38457 38448 12 EQMEAEIAHLK YQETQQMQMKFQQVREQMEAEIAHLKQENG QQVREQMEAEIAHLKQENGILRDAVSNTTN R E Q L K Q 2 0 0 0 0 1 3 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1297.6336 Q86UP2 Q86UP2 413 423 KTN1 Kinectin yes yes 3 0.0094213 29.807 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.2073 1.1759 16.81 6 Median 1.3434 1.313 5.6561 2 0 Median 1.0957 0.95507 14.018 2 0 Median 1.1913 1.2851 NaN 1 0 Median 1.2065 1.0962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13887000 6074700 7812700 6528000 2592500 3935500 3720500 1780800 1939800 2188900 1043800 1145100 1450000 657690 792320 0 0 0 0 0 0 7714 3280 8023 38520;38521;38522;38523;38524;38525 38458;38459;38460 38458 3 EQMFAAQEMFK APAQQQPKKNLSLTREQMFAAQEMFKTANK SLTREQMFAAQEMFKTANKVTRPEKALILG R E Q F K T 2 0 0 0 0 2 2 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 11 0 1358.5999 H0Y3X6;A0A0C4DFX9;Q9H3P2 H0Y3X6 440 450 NELFA Negative elongation factor A yes no 2 0.0059542 48.091 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.179 1.0506 22.324 5 Median 1.176 1.1312 NaN 1 0 Median 1.179 1.047 NaN 1 0 Median 0.67255 0.71515 NaN 1 1 Median 1.3529 1.1719 15.453 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6894700 3181100 3713600 3152200 1178900 1973400 575840 243570 332270 2884900 1622100 1262800 281770 136580 145190 0 0 0 0 0 0 7715 231 8024 38526;38527;38528;38529;38530 38461;38462 38461 2 EQMIDLQNLLTTQSPSVK TPNNRPDAPKEKKKKEQMIDLQNLLTTQSP IDLQNLLTTQSPSVKSLAVPTIEELEDEEE K E Q V K S 0 0 1 1 0 3 1 0 0 1 3 1 1 0 1 2 2 0 0 1 0 0 18 0 2044.0511 Q9BVJ6 Q9BVJ6 556 573 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.044468 21.251 By MS/MS 1 1.0669 1.0943 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0669 1.0943 NaN 1 0 Median NaN NaN NaN 0 0 Median 1097900 549230 548660 0 0 0 0 0 0 0 0 0 0 0 0 1097900 549230 548660 0 0 0 7716 3855 8025 38531 38463 38463 1 EQMLDTSSLLQFMR DTWAALEGLSFSPFREQMLDTSSLLQFMRE REQMLDTSSLLQFMREKQHLLSIDEPLFRS R E Q M R E 0 1 0 1 0 2 1 0 0 0 3 0 2 1 0 2 1 0 0 0 0 0 14 0 1697.8117 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 781 794 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.0004518 69.979 By MS/MS By matching 2 1 0.75501 0.75818 14.603 3 Median 0.75386 0.75136 1.2776 2 0 Median 1.115 0.96713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2257600 1253100 1004500 1855200 1082800 772340 402440 170290 232150 0 0 0 0 0 0 0 0 0 0 0 0 7717 189 8026 38532;38533;38534 38464 38464 1 EQMQPTHPIR EASEAAYKEAFEISKEQMQPTHPIRLGLAL FEISKEQMQPTHPIRLGLALNFSVFYYEIQ K E Q I R L 0 1 0 0 0 2 1 0 1 1 0 0 1 0 2 0 1 0 0 0 0 0 10 0 1235.6081 Q04917;A2IDB2 Q04917 163 172 YWHAH 14-3-3 protein eta yes no 2;3 0.012347 41.448 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.75474 0.71185 16.345 7 Median 0.69585 0.65605 11.545 2 0 Median 0.86908 0.74224 4.0497 2 0 Median 0.67401 0.63062 4.7598 2 0 Median NaN NaN NaN 0 0 Median 1.0063 0.97179 NaN 1 0 Median NaN NaN NaN 0 0 Median 8607800 4785400 3822400 4592300 2651400 1940900 1290400 674400 616040 2355700 1284500 1071200 0 0 0 369380 175110 194270 0 0 0 7718 2714 8027 38535;38536;38537;38538;38539;38540;38541 38465;38466;38467;38468;38469 38467 5 EQMSALGESGWQEDINR CFSQLKVLNKVLAIREQMSALGESGWQEDI MSALGESGWQEDINRLQVVASQWTLKKSLL R E Q N R L 1 1 1 1 0 2 3 2 0 1 1 0 1 0 0 2 0 1 0 0 0 0 17 0 1948.8585 Q9NU22 Q9NU22 2831 2847 MDN1 Midasin yes yes 2 7.8864E-15 128.31 By MS/MS 1 1.0063 1.0639 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0063 1.0639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8559400 4304400 4255000 0 0 0 0 0 0 8559400 4304400 4255000 0 0 0 0 0 0 0 0 0 7719 4112 8028 38542 38470;38471 38471 2 EQNIVFNAETYSNLIK LNQKKGAYDIFLNAKEQNIVFNAETYSNLI QNIVFNAETYSNLIKLLMSEDYFTQAMEVK K E Q I K L 1 0 3 0 0 1 2 0 0 2 1 1 0 1 0 1 1 0 1 1 0 0 16 0 1881.9472 P42704 P42704 1060 1075 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0001323 57.836 By MS/MS By MS/MS By MS/MS 3 1 1 1.2785 1.2836 39.134 5 Median 1.0311 0.98979 55.21 3 0 Median 1.4823 1.2836 NaN 1 0 Median 1.2785 1.3819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21572000 9911200 11661000 15597000 7399200 8197500 3356400 1406900 1949500 2619100 1105100 1514000 0 0 0 0 0 0 0 0 0 7720 2315 8029 38543;38544;38545;38546;38547 38472;38473;38474;38475;38476 38473 5 EQNKPDSSPLYIQNPFETSLNISK NFAFDKNSINIRQGREQNKPDSSPLYIQNP LYIQNPFETSLNISKNVSQSQLQKFVDLAR R E Q S K N 0 0 3 1 0 2 2 0 0 2 2 2 0 1 3 4 1 0 1 0 0 0 24 1 2748.3606 Q9NVV4 Q9NVV4 465 488 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 3 0.012343 18.248 By MS/MS By MS/MS By matching 1 1 1 0.65486 0.6498 29.185 3 Plateau 0.62777 0.59167 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65572 0.68559 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36547 0.39052 NaN 1 0 Median NaN NaN NaN 0 0 Median 14921000 8576100 6344800 6519600 3826300 2693300 0 0 0 7665400 4241000 3424400 0 0 0 735940 508810 227130 0 0 0 7721 4141 8030 38548;38549;38550 38477;38478 38477 2 EQNQDSQTEAEELRK EFKQKQSVNKGKQGKEQNQDSQTEAEELRK EQNQDSQTEAEELRKLWKTHTMQQTKQQRE K E Q R K L 1 1 1 1 0 3 4 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 15 1 1803.8235 H0YC07;Q8N573 H0YC07 204 218 OXR1 Oxidation resistance protein 1 yes no 3 0.056012 9.6577 By matching By MS/MS 1 1 0.81175 0.80255 6.8871 2 Median 0.8149 0.8426 NaN 1 0 Median 0.80861 0.76441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3510100 1915800 1594300 948920 548380 400530 2561200 1367500 1193700 0 0 0 0 0 0 0 0 0 0 0 0 7722 1171 8031 38551;38552 38479 38479 1 EQNSLSLLEAR QTERVTKEMNEFIHKEQNSLSLLEAREADG FIHKEQNSLSLLEAREADGDVVNEKKRTPN K E Q A R E 1 1 1 0 0 1 2 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 11 0 1258.6517 Q8TF01 Q8TF01 462 472 PNISR Arginine/serine-rich protein PNISR yes yes 2 0.0026564 52.278 By MS/MS 1 1.01 1.08 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.01 1.08 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4405000 2189300 2215700 0 0 0 0 0 0 4405000 2189300 2215700 0 0 0 0 0 0 0 0 0 7723 3481 8032 38553 38480 38480 1 EQNSPIYISR PKTEEGLGFNIMGGKEQNSPIYISRIIPGG IMGGKEQNSPIYISRIIPGGIADRHGGLKR K E Q S R I 0 1 1 0 0 1 1 0 0 2 0 0 0 0 1 2 0 0 1 0 0 0 10 0 1205.6041 Q9NUP9;G3V1D4;O14910;H0YIA8;H0YI92;Q9HAP6 Q9NUP9 112 121 LIN7C;LIN7A;LIN7B Protein lin-7 homolog C;Protein lin-7 homolog A;Protein lin-7 homolog B yes no 2 0.00063896 72.643 By MS/MS By MS/MS 1 1 1.42 1.2658 54.033 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89919 0.86385 NaN 1 0 Median 2.2424 1.8548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15381000 7470400 7910300 0 0 0 0 0 0 13799000 6895800 6903500 1581400 574620 1006800 0 0 0 0 0 0 7724 4117 8033 38554;38555 38481;38482 38481 2 EQPEKEPELQQYVPQLQNNTILR LKLCERVTKVLNWVREQPEKEPELQQYVPQ LQQYVPQLQNNTILRLLQQVSQIYQSIEFS R E Q L R L 0 1 2 0 0 5 4 0 0 1 3 1 0 0 3 0 1 0 1 1 0 0 23 1 2793.4297 Q14152 Q14152 416 438 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 6.9444E-35 138.77 By MS/MS By MS/MS By MS/MS 2 1 2 0.61105 0.60655 28.617 5 Median 0.49285 0.50274 26.549 2 0 Median 0.71679 0.67477 NaN 1 0 Median 0.58681 0.7036 36.244 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110370000 65406000 44967000 91806000 53996000 37811000 7877000 4441400 3435700 10689000 6968600 3720600 0 0 0 0 0 0 0 0 0 7725 2860 8034 38556;38557;38558;38559;38560 38483;38484;38485;38486;38487;38488 38485 6 EQPQQTVIADHSLSASHMETTMK PYLWVQKLGGLHFPKEQPQQTVIADHSLSA ADHSLSASHMETTMKLLKTRVQSRLALHKQ K E Q M K L 2 0 0 1 0 3 2 0 2 1 1 1 2 0 1 3 3 0 0 1 0 0 23 0 2568.1948 Q13769 Q13769 455 477 THOC5 THO complex subunit 5 homolog yes yes 3;4 2.9602E-18 82.477 By MS/MS By matching 2 1 0.82932 0.81666 9.3978 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80044 0.79796 3.2749 2 0 Median 1.0779 0.93432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65815000 32688000 33127000 0 0 0 0 0 0 62173000 30859000 31314000 3641300 1828400 1812900 0 0 0 0 0 0 7726 2837 8035 38561;38562;38563 38489;38490;38491 38491 3 EQPWVSVQPR WSELSKVWEQIDQMKEQPWVSVQPRKLRQN IDQMKEQPWVSVQPRKLRQNLDALLNQLKS K E Q P R K 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 1 0 1 0 2 0 0 10 0 1224.6251 Q14204 Q14204 1348 1357 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00039606 104.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 0.83434 0.81566 68.653 7 Median 2.0218 1.9637 118.24 2 0 Median 0.93565 0.76222 18.766 2 0 Median 0.77676 0.81566 NaN 1 0 Median 0.82845 0.72239 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77224 0.64453 NaN 1 0 Median 82117000 40559000 41558000 23627000 8472400 15155000 25024000 13848000 11176000 20506000 11292000 9214100 11598000 6178100 5419700 0 0 0 1361500 767880 593580 7727 2865 8036 38564;38565;38566;38567;38568;38569;38570 38492;38493;38494;38495;38496;38497;38498;38499 38495 8 EQQAQVEKEDFSDMVAEHAAK LDPMAMTQKYEEHVREQQAQVEKEDFSDMV EKEDFSDMVAEHAAKQKQKKRKAQPQDSRG R E Q A K Q 4 0 0 2 0 3 4 0 1 0 0 2 1 1 0 1 0 0 0 2 0 0 21 1 2389.0856 Q13435;E9PPJ0;H0YEX5 Q13435 850 870 SF3B2 Splicing factor 3B subunit 2 yes no 3;4 3.8701E-15 97.488 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 4 2 1.0559 1.1159 21.206 14 Median 1.061 1.1133 0.58066 2 0 Median 0.88063 0.82471 10.648 2 0 Median 0.93356 1.0913 3.4246 2 0 Median 1.138 1.084 10.897 2 0 Median 1.1199 1.2287 28.311 4 1 Median 1.3078 1.1867 2.1121 2 0 Median 157870000 76000000 81868000 17285000 8096400 9188300 3459600 1538100 1921500 65827000 33069000 32757000 7341900 3543600 3798300 63031000 29341000 33691000 924260 412360 511900 7728 2817 8037 38571;38572;38573;38574;38575;38576;38577;38578;38579;38580;38581;38582;38583;38584 38500;38501;38502;38503;38504;38505;38506;38507;38508;38509 38503 10 EQQEAIEHIDEVQNEIDR EETSASAGLPKKGEKEQQEAIEHIDEVQNE EAIEHIDEVQNEIDRLNEQASEEILKVEQK K E Q D R L 1 1 1 2 0 3 5 0 1 3 0 0 0 0 0 0 0 0 0 1 0 0 18 0 2194.0138 Q01105;A0A0C4DFV9;A0A087X027;P0DME0 Q01105 40 57 SET;SETSIP Protein SET;Protein SETSIP yes no 2;3 9.5516E-14 133.71 By matching By matching By MS/MS 1 2 3 1.0526 1.0143 15.25 6 Median 1.0775 1.0676 NaN 1 0 Median 1.3355 1.1285 22.339 2 0 Median 0.94031 0.91594 13.426 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99268000 49910000 49358000 5754400 2811300 2943000 3838300 1884100 1954300 89676000 45215000 44461000 0 0 0 0 0 0 0 0 0 7729 2683 8038 38585;38586;38587;38588;38589;38590 38510;38511;38512;38513 38511 4 EQQEAIEHIDEVQNEIDRLNEQASEEILK EETSASAGLPKKGEKEQQEAIEHIDEVQNE EIDRLNEQASEEILKVEQKYNKLRQPFFQK K E Q L K V 2 1 2 2 0 4 8 0 1 4 2 1 0 0 0 1 0 0 0 1 0 0 29 1 3448.6594 Q01105;A0A0C4DFV9 Q01105 40 68 SET Protein SET yes no 4 0.039352 11.385 By MS/MS 2 0.88366 0.82232 12.775 2 Median NaN NaN NaN 0 0 Median 0.88366 0.82232 12.775 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4535200 2208900 2326300 0 0 0 4535200 2208900 2326300 0 0 0 0 0 0 0 0 0 0 0 0 7730 2683 8039 38591;38592 38514 38514 1 EQQEMQQMYDMIMQHK VGVTELSDAQKKQLKEQQEMQQMYDMIMQH QQEMQQMYDMIMQHKRAMQDMQLLWEKAVQ K E Q H K R 0 0 0 1 0 5 2 0 1 1 0 1 4 0 0 0 0 0 1 0 0 0 16 0 2096.8788 Q8IWZ8 Q8IWZ8 447 462 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 3 0.051618 11.044 By MS/MS 1 1.1086 1.1856 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1086 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 782470 357350 425120 0 0 0 0 0 0 782470 357350 425120 0 0 0 0 0 0 0 0 0 7731 3330 8040 38593 38515 38515 1 EQQHLLASADTGR WRFLWEVGEAEAWVREQQHLLASADTGRDL VREQQHLLASADTGRDLTGALRLLNKHTAL R E Q G R D 2 1 0 1 0 2 1 1 1 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1424.7008 O15020 O15020 659 671 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.0012152 40.477 By MS/MS 1 0.53631 0.59597 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53631 0.59597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2854600 1572800 1281800 0 0 0 0 0 0 2854600 1572800 1281800 0 0 0 0 0 0 0 0 0 7732 1512 8041 38594 38516 38516 1 EQQHVMEELFQSSFR QSPMLLELMTEVLCREQQHVMEELFQSSFR EQQHVMEELFQSSFRRIARRGSCVTQVGLL R E Q F R R 0 1 0 0 0 3 3 0 1 0 1 0 1 2 0 2 0 0 0 1 0 0 15 0 1893.8679 P78527 P78527 1769 1783 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 8.716E-10 126.56 By MS/MS By MS/MS By MS/MS By matching By matching 5 4 9 4 2 0.99431 1.0419 82.135 24 Median 1.0149 0.99811 24.855 5 0 Median 1.551 1.3115 19.003 4 0 Median 0.88066 0.97718 125.79 9 2 Median 1.5088 1.3175 11.692 4 0 Median 0.84102 0.88448 6.3975 2 0 Median NaN NaN NaN 0 0 Median 163680000 85452000 78229000 40121000 19244000 20877000 13102000 5587400 7514600 103900000 57867000 46035000 4675100 1838300 2836800 1879600 914860 964730 0 0 0 7733 2647 8042;8043 38595;38596;38597;38598;38599;38600;38601;38602;38603;38604;38605;38606;38607;38608;38609;38610;38611;38612;38613;38614;38615;38616;38617;38618 38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533 38517 1315 17 EQQILTLFR AEAKIQQYISHRNIREQQILTLFRENFEKS SHRNIREQQILTLFRENFEKSFTVMELVKI R E Q F R E 0 1 0 0 0 2 1 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1146.6397 Q53H82 Q53H82 221 229 LACTB2 Beta-lactamase-like protein 2 yes yes 2 0.0044715 60.59 By MS/MS By matching By matching By matching 1 2 1 1 1.1129 0.95112 15.812 5 Median 1.0843 1.014 NaN 1 0 Median 1.2438 1.0623 15.63 2 0 Median 0.7947 0.76515 NaN 1 0 Median 1.113 0.93635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12772000 5938400 6833800 10577000 4997300 5580200 1343100 608620 734520 760440 299110 461340 91082 33384 57698 0 0 0 0 0 0 7734 3032 8044 38619;38620;38621;38622;38623 38534;38535 38534 2 EQQIVIQSSGGLSK NGIVHVSAKDKGTGREQQIVIQSSGGLSKD REQQIVIQSSGGLSKDDIENMVKNAEKYAE R E Q S K D 0 0 0 0 0 3 1 2 0 2 1 1 0 0 0 3 0 0 0 1 0 0 14 0 1472.7835 P38646;H0Y8S0 P38646 542 555 HSPA9 Stress-70 protein, mitochondrial yes no 2 2.8117E-08 149.23 By MS/MS By MS/MS 2 2 1.1515 1.0492 6.6022 4 Median 1.0541 0.99524 3.5715 2 1 Median 1.2846 1.1038 3.2745 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115630000 51496000 64130000 31210000 13988000 17222000 84416000 37507000 46908000 0 0 0 0 0 0 0 0 0 0 0 0 7735 2277 8045 38624;38625;38626;38627 38536;38537;38538;38539;38540;38541;38542;38543 38542 8 EQQIVIQSSGGLSKDDIENMVK NGIVHVSAKDKGTGREQQIVIQSSGGLSKD SSGGLSKDDIENMVKNAEKYAEEDRRKKER R E Q V K N 0 0 1 2 0 3 2 2 0 3 1 2 1 0 0 3 0 0 0 2 0 0 22 1 2417.2108 P38646;H0Y8S0 P38646 542 563 HSPA9 Stress-70 protein, mitochondrial yes no 3 7.773E-14 85.945 By MS/MS By matching By matching By MS/MS 2 1 1 1 1.3551 1.3041 22.519 5 Median 1.1211 1.0927 9.6388 2 0 Median 1.3951 1.3041 NaN 1 0 Median 1.3551 1.5258 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6218 1.817 NaN 1 1 Median NaN NaN NaN 0 0 Median 104210000 45271000 58942000 86970000 38174000 48796000 6932400 2734500 4197900 4919500 2639400 2280000 0 0 0 5392100 1723600 3668500 0 0 0 7736 2277 8046 38628;38629;38630;38631;38632 38544;38545;38546;38547;38548;38549 38547 6 EQQLAEIEAR ALVLGPLKSVQELRREQQLAEIEARRQERE QELRREQQLAEIEARRQEREKNGNEEGEER R E Q A R R 2 1 0 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1185.599 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7 J3KN36 708 717 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.00038072 91.087 By matching By MS/MS By matching 1 2 1 1.2709 1.1124 14.851 4 Median 1.1213 1.122 NaN 1 0 Median 1.5337 1.2746 21.794 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2359 1.1029 NaN 1 0 Median 25536000 11075000 14461000 5292100 2299100 2993000 18385000 7987300 10398000 0 0 0 0 0 0 0 0 0 1858200 788200 1070000 7737 117;1301 8047 38633;38634;38635;38636 38550;38551;38552 38552 3 EQQLPVNEETLFQK FEAEEKLAEWVLTQREQQLPVNEETLFQKA REQQLPVNEETLFQKATKIGRSLEGGFKIS R E Q Q K A 0 0 1 0 0 3 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1701.8574 Q7Z3K3 Q7Z3K3 1040 1053 POGZ Pogo transposable element with ZNF domain yes yes 2 0.00023138 76.655 By MS/MS By MS/MS 1 2 0.83852 0.87831 12.253 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67437 0.72569 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86135 0.89501 2.6646 2 0 Median NaN NaN NaN 0 0 Median 31433000 17331000 14102000 0 0 0 0 0 0 6712800 3909700 2803100 0 0 0 24720000 13421000 11299000 0 0 0 7738 3241 8048 38637;38638;38639 38553;38554;38555;38556 38555 4 EQSELLSFR E Q F R 0 1 0 0 0 1 2 0 0 0 2 0 0 1 0 2 0 0 0 0 0 0 9 0 1107.556 REV__H3BSH2 yes no 2 0.025538 37.558 By MS/MS By matching 2 1 0.98443 1.0181 77.197 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98443 1.0181 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.9926 3.877 NaN 1 0 Median 12960000 6781800 6178700 0 0 0 0 0 0 12615000 6724300 5890500 0 0 0 0 0 0 345710 57446 288260 + 7739 4525 8049 38640;38641;38642 38557 38557 1 EQSGTIYLQHADEER KELEDLLSPLEELVKEQSGTIYLQHADEER EQSGTIYLQHADEEREKTYKLAENIDAQLK K E Q E R E 1 1 0 1 0 2 3 1 1 1 1 0 0 0 0 1 1 0 1 0 0 0 15 0 1774.8122 P37198;M0QXN5 P37198 416 430 NUP62 Nuclear pore glycoprotein p62 yes no 2;3 2.805E-09 100.38 By MS/MS By MS/MS 3 2 1.2306 1.0316 37.338 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9914 1.0015 51.256 3 1 Median 1.2689 1.0653 4.5373 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33819000 13715000 20105000 0 0 0 0 0 0 15642000 6504400 9137900 18177000 7210200 10967000 0 0 0 0 0 0 7740 2267 8050 38643;38644;38645;38646;38647 38558;38559;38560;38561;38562;38563;38564 38563 7 EQSGTIYLQHADEEREK KELEDLLSPLEELVKEQSGTIYLQHADEER SGTIYLQHADEEREKTYKLAENIDAQLKRM K E Q E K T 1 1 0 1 0 2 4 1 1 1 1 1 0 0 0 1 1 0 1 0 0 0 17 1 2031.9498 P37198;M0QXN5 P37198 416 432 NUP62 Nuclear pore glycoprotein p62 yes no 3;4 5.718E-11 103.61 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 5 2 2 0.94595 0.95592 21.435 12 Median 0.93903 0.94432 3.7885 2 0 Median 1.0267 0.94208 NaN 1 0 Median 0.93053 1.0205 18.384 5 3 Median 1.2635 1.1585 2.3458 2 0 Median 0.63629 0.68206 28.496 2 1 Median NaN NaN NaN 0 0 Median 63549000 31369000 32181000 9214900 4395400 4819500 2466800 1081700 1385100 31914000 16933000 14981000 14212000 5917400 8294800 5741600 3041000 2700600 0 0 0 7741 2267 8051 38648;38649;38650;38651;38652;38653;38654;38655;38656;38657;38658;38659 38565;38566;38567;38568;38569;38570;38571;38572;38573;38574;38575;38576;38577;38578;38579 38576 15 EQSILELGSLLAK KRDIQENDEEAVQVKEQSILELGSLLAKTG VKEQSILELGSLLAKTGQAAELGGLLKYVR K E Q A K T 1 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 0 0 0 0 0 0 13 0 1399.7922 O00231;J3QRY4 O00231 47 59 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.0019808 49.5 By MS/MS By MS/MS By matching By matching 1 3 1 2 1.1411 0.97182 16.515 7 Median 1.2563 1.2077 NaN 1 0 Median 1.0755 0.9119 4.6849 3 0 Median 1.2621 1.2132 NaN 1 0 Median 1.0551 0.91938 23.01 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78739000 36807000 41932000 1645000 663160 981810 43829000 20406000 23422000 22143000 10466000 11677000 11122000 5271700 5850500 0 0 0 0 0 0 7742 1448 8052 38660;38661;38662;38663;38664;38665;38666 38580;38581;38582 38582 3 EQSLNVSQDLDTIR TKWLESSQHTLNYWKEQSLNVSQDLDTIRS KEQSLNVSQDLDTIRSNINNFFEFSKEVDE K E Q I R S 0 1 1 2 0 2 1 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 14 0 1616.8006 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4972 4985 SYNE2 Nesprin-2 yes no 2 2.5542E-05 142.07 By MS/MS By matching 1 2 0.92401 0.86749 24.052 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82262 0.86749 NaN 1 0 Median 1.1722 1.038 30.699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12405000 6820500 5584500 0 0 0 0 0 0 11844000 6593000 5251100 560950 227550 333410 0 0 0 0 0 0 7743 3521 8053 38667;38668;38669 38583;38584 38583 2 EQSQLTATQTR SQQRQQIAEIEKQTKEQSQLTATQTRTVNK KQTKEQSQLTATQTRTVNKHGDEIITSTTS K E Q T R T 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q6P2Q9 Q6P2Q9 2035 2045 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.018812 35.511 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1.274 1.1121 21.521 6 Median 1.0225 1.0056 NaN 1 0 Median 1.3843 1.2168 NaN 1 0 Median 0.97272 1.0804 NaN 1 0 Median 1.3076 1.1448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.643 1.3644 39.307 2 0 Median 3335400 1473800 1861600 157300 77220 80083 548270 219320 328950 1476200 682540 793640 304810 131000 173810 0 0 0 848800 363730 485070 7744 3157 8054 38670;38671;38672;38673;38674;38675 38585;38586;38587;38588 38587 4 EQSVQEIPVSR SFYKVILGAHNEKVREQSVQEIPVSRLFRE EKVREQSVQEIPVSRLFREPSQADIALLKL R E Q S R L 0 1 0 0 0 2 2 0 0 1 0 0 0 0 1 2 0 0 0 2 0 0 11 0 1270.6517 CON__P06868 CON__P06868 648 658 yes yes 2 0.00039537 99.653 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 544760 544760 0 0 0 0 0 0 0 0 0 0 544760 544760 0 0 0 0 0 0 0 + 7745 751 8055 38676 38589 38589 1 EQTADGVAVIPVLQR LILRTWESVKRTTRKEQTADGVAVIPVLQR EQTADGVAVIPVLQRTLHYECIVLVKQFRP K E Q Q R T 2 1 0 1 0 2 1 1 0 1 1 0 0 0 1 0 1 0 0 3 0 0 15 0 1594.8679 A6NFX8;Q9UKK9;H0YEY4;A6NCQ0;A6NJU6 A6NFX8 69 83 NUDT5 ADP-sugar pyrophosphatase yes no 2 3.1537E-06 90.685 By MS/MS By matching 1 1 0.72588 0.65078 5.9201 2 Median 0.6605 0.6241 NaN 1 0 Median 0.79773 0.6786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7355300 3938100 3417200 6108400 3257100 2851300 1246900 680990 565910 0 0 0 0 0 0 0 0 0 0 0 0 7746 511 8056 38677;38678 38590 38590 1 EQTEGEYSSLEHESAR GYMTRHNNLDLVIIREQTEGEYSSLEHESA QTEGEYSSLEHESARGVIECLKIVTRAKSQ R E Q A R G 1 1 0 0 0 1 5 1 1 0 1 0 0 0 0 3 1 0 1 0 0 0 16 0 1850.7919 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 165 180 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2;3 8.7485E-10 102.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.2209 1.1031 7.0872 7 Median 1.0347 1.0262 NaN 1 0 Median 1.2942 1.1177 7.346 2 0 Median 1.0774 1.1154 11.219 2 0 Median 1.2476 1.1031 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4326 1.1982 NaN 1 0 Median 31386000 14709000 16678000 6425800 3165600 3260100 12356000 5428000 6928100 9206500 4755000 4451500 1556700 604000 952730 0 0 0 1841100 755890 1085200 7747 96 8057 38679;38680;38681;38682;38683;38684;38685 38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602 38598 12 EQTEILESSR EQELKEKVSSVDKQREQTEILESSRMRAQD VDKQREQTEILESSRMRAQDIIGHHQSEDR R E Q S R M 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 10 0 1190.5779 Q5T200 Q5T200 922 931 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2 0.0095845 45.022 By MS/MS By MS/MS By matching 1 1 1 0.86768 0.94712 33.859 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86768 0.94712 NaN 1 0 Median 1.1446 1.0043 NaN 1 0 Median 0.52108 0.54375 NaN 1 0 Median NaN NaN NaN 0 0 Median 18202000 10209000 7993000 0 0 0 0 0 0 10925000 5771000 5154300 1773600 808420 965230 5503000 3629600 1873400 0 0 0 7748 3082 8058 38686;38687;38688 38603;38604 38603 2 EQTEQILR RTFNCGVGAVLVVSKEQTEQILRDIQQHKE AVLVVSKEQTEQILRDIQQHKEEAWVIGSV K E Q L R D 0 1 0 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1015.5298 P22102;A0A140TA71 P22102 744 751 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0023931 117.16 By matching By MS/MS 1 2 1.314 1.2292 15.657 3 Median 1.314 1.2989 NaN 1 0 Median 1.2482 1.0905 16.928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13723000 6199900 7523400 2047900 796890 1251100 11675000 5403000 6272400 0 0 0 0 0 0 0 0 0 0 0 0 7749 2098 8059 38689;38690;38691 38605;38606 38605 2 EQTFSGGTSQDTK RPSQAAGDNQGDEAKEQTFSGGTSQDTKAS AKEQTFSGGTSQDTKASESSKPWPDATYGT K E Q T K A 0 0 0 1 0 2 1 2 0 0 0 1 0 1 0 2 3 0 0 0 0 0 13 0 1384.6107 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 203 215 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0045713 40.154 By MS/MS By matching 1 2 1.0559 1.0857 21.045 3 Median NaN NaN NaN 0 0 Median 0.91712 0.80733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1143 1.1476 7.8324 2 0 Median NaN NaN NaN 0 0 Median 2638400 1291600 1346900 0 0 0 1584400 833440 750950 0 0 0 0 0 0 1054000 458130 595910 0 0 0 7750 439 8060 38692;38693;38694 38607 38607 1 EQTGLEAYALGLDTK GRQTWTYLQDERAGREQTGLEAYALGLDTK EQTGLEAYALGLDTKNYFKDLPKAHTAFEG R E Q T K N 2 0 0 1 0 1 2 2 0 0 3 1 0 0 0 0 2 0 1 0 0 0 15 0 1607.8043 C9J315;P48449 C9J315 48 62 LSS Lanosterol synthase yes no 2 0.010681 29.936 By MS/MS By matching 1 1 0.88986 0.82365 17.544 2 Median 0.75309 0.72756 NaN 1 0 Median 1.0515 0.93244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3499800 1943300 1556600 3259100 1837400 1421600 240780 105830 134940 0 0 0 0 0 0 0 0 0 0 0 0 7751 672 8061 38695;38696 38608;38609 38609 2 EQTLHTPVMMQTPQLTSTIMR LTEESSSSDSMWLSREQTLHTPVMMQTPQL PVMMQTPQLTSTIMREPKRLRPEDSFMSVY R E Q M R E 0 1 0 0 0 3 1 0 1 1 2 0 3 0 2 1 5 0 0 1 0 0 21 0 2442.2069 Q8N3U4 Q8N3U4 1107 1127 STAG2 Cohesin subunit SA-2 yes yes 3 1.327E-12 81.665 By MS/MS By MS/MS 1 1 0.7842 0.8461 16.704 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68378 0.75184 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89937 0.95218 NaN 1 0 Median NaN NaN NaN 0 0 Median 15400000 8598800 6801600 0 0 0 0 0 0 12548000 7297400 5250300 0 0 0 2852800 1301400 1551300 0 0 0 7752 3369 8062 38697;38698 38610;38611;38612;38613;38614 38611 5 EQVAEETSGDSK IKKETDVFWKSLDFKEQVAEETSGDSKARN DFKEQVAEETSGDSKARNLADDSSENKVEN K E Q S K A 1 0 0 1 0 1 3 1 0 0 0 1 0 0 0 2 1 0 0 1 0 0 12 0 1278.5576 P35251 P35251 557 568 RFC1 Replication factor C subunit 1 yes yes 2 0.060456 24.838 By MS/MS By matching 1 1 0.9781 0.95757 11.172 2 Median NaN NaN NaN 0 0 Median 1.1773 1.0363 NaN 1 0 Median 0.81263 0.88484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 723110 339000 384110 0 0 0 617650 274380 343270 105460 64626 40836 0 0 0 0 0 0 0 0 0 7753 2239 8063 38699;38700 38615 38615 1 EQVANSAFVER KETQKSIYYITGESKEQVANSAFVERVRKR GESKEQVANSAFVERVRKRGFEVVYMTEPI K E Q E R V 2 1 1 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1248.6099 P08238;Q58FF7 P08238 492 502 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 1.519E-06 159.79 By MS/MS By MS/MS By matching By matching By MS/MS 7 7 1 3 5 1.028 0.94383 18.58 22 Median 0.91489 0.90168 22.567 7 3 Median 0.93025 0.7861 17.275 7 2 Median 0.95746 0.90103 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0261 1.0437 13.795 3 0 Median 1.211 0.98999 6.3009 4 0 Median 584400000 266400000 318010000 294420000 137910000 156500000 262940000 115870000 147070000 6613000 3214000 3399000 0 0 0 9597700 4518500 5079200 10838000 4877500 5960400 7754 1899 8064 38701;38702;38703;38704;38705;38706;38707;38708;38709;38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723 38616;38617;38618;38619;38620;38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638 38635 23 EQVIAALR YENMVTEIMSMGYEREQVIAALRASFNNPD MSMGYEREQVIAALRASFNNPDRAVEYLLM R E Q L R A 2 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 898.52362 P54727;H0Y579 P54727 205 212 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0025421 107.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.1077 0.95865 27.057 7 Median 1.0849 1.0351 12.744 2 0 Median 1.1698 0.99627 5.4432 2 0 Median 0.80795 0.81729 NaN 1 0 Median 1.3568 1.1671 NaN 1 0 Median 0.52575 0.52759 NaN 1 0 Median NaN NaN NaN 0 0 Median 96184000 45993000 50190000 37427000 18500000 18926000 44325000 19556000 24769000 8480000 4494400 3985600 1975200 796580 1178600 3976800 2646400 1330500 0 0 0 7755 2486 8065 38724;38725;38726;38727;38728;38729;38730 38639;38640;38641;38642;38643;38644;38645;38646;38647;38648 38644 10 EQVLEPMLNGTDK EITELPVRTWTQVYKEQVLEPMLNGTDKTP YKEQVLEPMLNGTDKTPALISDYKEYHTDT K E Q D K T 0 0 1 1 0 1 2 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1472.7181 Q02880;E9PCY5 Q02880 958 970 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 1.0206E-10 110.39 By MS/MS 1 0.86104 0.95969 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86104 0.95969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3449300 1737200 1712100 0 0 0 0 0 0 3449300 1737200 1712100 0 0 0 0 0 0 0 0 0 7756 2704 8066 38731 38649 38649 0 EQVLEPMLNGTEK EISELPVRTWTQTYKEQVLEPMLNGTEKTP YKEQVLEPMLNGTEKTPPLITDYREYHTDT K E Q E K T 0 0 1 0 0 1 3 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1486.7337 P11388 P11388 937 949 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.9409E-06 141.88 By matching By MS/MS By matching 1 2 1 1.0303 0.979 40.188 4 Median 2.1822 2.0501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87179 0.9074 11.065 2 0 Median 1.1334 0.97676 NaN 1 0 Median 31563000 15392000 16171000 1047000 306090 740950 0 0 0 0 0 0 0 0 0 30057000 14882000 15175000 459370 204130 255250 7757 1963 8067 38732;38733;38734;38735 38650;38651;38652 38651 2 EQVLHHPQLGER ASRTLYRIELLRKIREQVLHHPQLGERLKL KIREQVLHHPQLGERLKLCQPSLDLPEWWE R E Q E R L 0 1 0 0 0 2 2 1 2 0 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1441.7426 Q9P2D1 Q9P2D1 2066 2077 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.0051428 36.847 By MS/MS By MS/MS 2 2 0.71194 0.72977 22.018 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6599 0.72977 0.39848 2 0 Median 0.9732 0.84965 34.969 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5695400 3445700 2249700 0 0 0 0 0 0 4286000 2739200 1546800 1409300 706410 702910 0 0 0 0 0 0 7758 4220 8068 38736;38737;38738;38739 38653;38654;38655;38656;38657 38653 5 EQVLQPVSAELLELDIR RDSREEVERRKRAAREQVLQPVSAELLELD VLQPVSAELLELDIREVYQPGSVLDFPRRP R E Q I R E 1 1 0 1 0 2 3 0 0 1 4 0 0 0 1 1 0 0 0 2 0 0 17 0 1951.0626 P36915;A2AB27 P36915 102 118 GNL1 Guanine nucleotide-binding protein-like 1 yes no 2 0.00052627 41.54 By MS/MS 1 0.94322 0.81302 NaN 1 Median NaN NaN NaN 0 0 Median 0.94322 0.81302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1346600 679930 666680 0 0 0 1346600 679930 666680 0 0 0 0 0 0 0 0 0 0 0 0 7759 2263 8069 38740 38658;38659 38659 2 EQVNDLFSR DNERLSKVEKARQLREQVNDLFSRKFGEAI KARQLREQVNDLFSRKFGEAIGMGFPVKVP R E Q S R K 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1106.5356 P78347;A0A494C1K3;A0A087WW90;A0A0D9SF80;A0A494C0I1;A0A494C1N8;Q86UP8;Q6EKJ0 P78347 870 878 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 2 0.00071783 102.51 By matching By matching By MS/MS By MS/MS By matching 1 1 3 5 1 1.0227 0.94113 20.024 11 Median 0.89757 0.88154 NaN 1 0 Median 1.0227 0.87814 NaN 1 0 Median 0.88242 0.94113 26.454 3 1 Median 1.1426 0.96997 17.238 5 1 Median 0.63453 0.67096 NaN 1 0 Median NaN NaN NaN 0 0 Median 49275000 26671000 22605000 2434100 1388600 1045500 1874200 984430 889760 36624000 19839000 16785000 5160600 2394300 2766300 3182300 2064000 1118300 0 0 0 7760 2642 8070 38741;38742;38743;38744;38745;38746;38747;38748;38749;38750;38751 38660;38661;38662;38663;38664;38665;38666;38667 38660 8 EQVNDLFSRK DNERLSKVEKARQLREQVNDLFSRKFGEAI ARQLREQVNDLFSRKFGEAIGMGFPVKVPY R E Q R K F 0 1 1 1 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1234.6306 P78347;A0A494C1K3;A0A087WW90;A0A0D9SF80;A0A494C0I1;A0A494C1N8;Q86UP8;Q6EKJ0 P78347 870 879 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 3 0.0097156 30.872 By MS/MS 1 0.81984 0.93588 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81984 0.93588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1547600 769990 777570 0 0 0 0 0 0 1547600 769990 777570 0 0 0 0 0 0 0 0 0 7761 2642 8071 38752 38668 38668 1 EQVPGFTPR AQIRARLKNQVTQLKEQVPGFTPRLAILQV QVTQLKEQVPGFTPRLAILQVGNRDDSNLY K E Q P R L 0 1 0 0 0 1 1 1 0 0 0 0 0 1 2 0 1 0 0 1 0 0 9 0 1029.5243 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 29 37 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00097604 87.476 By MS/MS By MS/MS By matching 1 1 1 0.96593 0.79944 25.285 3 Plateau 0.81504 0.78494 NaN 1 0 Median 0.96593 0.79944 NaN 1 0 Median 0.43461 0.51137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47662000 25175000 22487000 14234000 7690700 6543200 30026000 15390000 14636000 3402600 2094400 1308100 0 0 0 0 0 0 0 0 0 7762 1968 8072 38753;38754;38755 38669;38670;38671;38672 38672 4 EQVSEELVR KRDVQEQMAVLMQSREQVSEELVRLQKDND VLMQSREQVSEELVRLQKDNDSLQGKHSLH R E Q V R L 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 1087.551 Q15276 Q15276 636 644 RABEP1 Rab GTPase-binding effector protein 1 yes yes 2 0.0098224 48.794 By MS/MS 1 0.97735 0.8288 NaN 1 Median NaN NaN NaN 0 0 Median 0.97735 0.8288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3997100 2102600 1894500 0 0 0 3997100 2102600 1894500 0 0 0 0 0 0 0 0 0 0 0 0 7763 2937 8073 38756 38673;38674 38673 2 EQVSPLETTLEK STEVQSLYREIKDAKEQVSPLETTLEKFQQ DAKEQVSPLETTLEKFQQEKEELINKKNTS K E Q E K F 0 0 0 0 0 1 3 0 0 0 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1372.7086 Q92878;A0A1W2PQ90 Q92878 910 921 RAD50 DNA repair protein RAD50 yes no 2 0.00058754 73.499 By MS/MS By MS/MS By MS/MS 1 1 1 0.78441 0.83506 12.13 3 Median 0.76602 0.73908 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78441 0.83506 NaN 1 0 Median 1.0458 0.94201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43570000 24882000 18689000 7448900 5045100 2403800 0 0 0 30317000 17048000 13270000 5804100 2789000 3015100 0 0 0 0 0 0 7764 3561 8074 38757;38758;38759 38675;38676;38677;38678 38675 4 EQVTNVGGAVVTGVTAVAQK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT VGGAVVTGVTAVAQKTVEGAGSIAAATGFV K E Q Q K T 3 0 1 0 0 2 1 3 0 0 0 1 0 0 0 0 3 0 0 6 0 0 20 0 1927.0375 P37840;E7EPV7;H6UYS7 P37840 61 80 SNCA Alpha-synuclein yes no 2;3 4.2529E-81 199.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 9 11 10 16 9 0.51905 0.43666 205.44 68 Median 1.0421 0.94665 42 13 0 Median 0.43338 0.3787 93.264 9 0 Median 0.42881 0.41635 168.23 11 1 Median 0.10613 0.08916 253.15 10 0 Median 0.40316 0.41254 265.71 16 4 Median 0.51826 0.4361 242.18 9 0 Median 5374800000 4503900000 870870000 1004700000 474170000 530540000 242570000 153640000 88928000 402740000 280310000 122420000 137150000 129670000 7477700 1907300000 1812300000 94960000 1680400000 1653800000 26536000 7765 2271 8075 38760;38761;38762;38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779;38780;38781;38782;38783;38784;38785;38786;38787;38788;38789;38790;38791;38792;38793;38794;38795;38796;38797;38798;38799;38800;38801;38802;38803;38804;38805;38806;38807;38808;38809;38810;38811;38812;38813;38814;38815;38816;38817;38818;38819;38820;38821;38822;38823;38824;38825;38826;38827 38679;38680;38681;38682;38683;38684;38685;38686;38687;38688;38689;38690;38691;38692;38693;38694;38695;38696;38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723;38724;38725;38726;38727;38728;38729;38730;38731;38732;38733;38734;38735;38736;38737;38738;38739;38740;38741;38742;38743;38744;38745;38746;38747;38748;38749;38750;38751;38752;38753;38754;38755;38756;38757;38758;38759;38760;38761;38762;38763;38764;38765;38766;38767;38768;38769;38770;38771;38772;38773;38774;38775;38776;38777;38778;38779;38780;38781;38782;38783;38784 38760 106 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT VEGAGSIAAATGFVKKDQLGKNEEGAPQEG K E Q V K K 7 0 1 0 0 2 2 6 0 1 0 2 0 1 0 1 5 0 0 8 0 0 36 1 3386.8045 P37840;E7EPV7;H6UYS7 P37840 61 96 SNCA Alpha-synuclein yes no 3 0.010215 16.068 By MS/MS 1 1.0561 0.95992 NaN 1 Median NaN NaN NaN 0 0 Median 1.0561 0.95992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 890140 391140 499010 0 0 0 890140 391140 499010 0 0 0 0 0 0 0 0 0 0 0 0 7766 2271 8076 38828 38785 38785 1 EQVYDAMGEKEEAK ENNDNIDEEAREELREQVYDAMGEKEEAKK REQVYDAMGEKEEAKKTEDKSLAKPETDKE R E Q A K K 2 0 0 1 0 1 4 1 0 0 0 2 1 0 0 0 0 0 1 1 0 0 14 1 1625.7243 P49321;E9PPR5;E9PNB5 P49321 145 158 NASP Nuclear autoantigenic sperm protein yes no 2;3 4.4296E-07 132.17 By MS/MS By MS/MS 3 5 1.524 1.4306 18.389 8 Median 1.002 1.0618 7.6179 3 0 Median 1.6101 1.4864 7.7375 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69111000 27775000 41336000 25312000 11647000 13664000 43800000 16128000 27672000 0 0 0 0 0 0 0 0 0 0 0 0 7767 2376 8077;8078 38829;38830;38831;38832;38833;38834;38835;38836 38786;38787;38788;38789;38790;38791;38792;38793 38788 1085 8 EQWANLEQLSAIR HFGSEKIRERIIYIREQWANLEQLSAIRKK IREQWANLEQLSAIRKKRLEEASLLHQFQA R E Q I R K 2 1 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 13 0 1556.7947 Q01082;A0A087WUZ3 Q01082 724 736 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.735E-07 138.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1 1.0691 0.96098 18.383 9 Median 1.1719 1.1 NaN 1 0 Median 1.1779 0.98673 8.1659 2 1 Median 0.68078 0.75191 34.696 2 0 Median 1.1087 0.96868 4.0641 2 0 Median 0.94195 0.97507 NaN 1 0 Median 1.013 0.83295 NaN 1 0 Median 76537000 38203000 38334000 12927000 5862800 7063800 7771700 3619800 4151800 42648000 22419000 20229000 5194300 2366600 2827600 7521400 3705900 3815500 474820 228610 246210 7768 2681 8079 38837;38838;38839;38840;38841;38842;38843;38844;38845 38794;38795;38796;38797;38798;38799;38800;38801 38794 8 EQWANLEQLSAIRK HFGSEKIRERIIYIREQWANLEQLSAIRKK REQWANLEQLSAIRKKRLEEASLLHQFQAD R E Q R K K 2 1 1 0 0 2 2 0 0 1 2 1 0 0 0 1 0 1 0 0 0 0 14 1 1684.8897 Q01082;A0A087WUZ3 Q01082 724 737 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00028037 50.088 By MS/MS By MS/MS 1 1 0.96634 1.0665 7.8258 2 Median 1.1095 1.1272 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84167 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10865000 5795100 5069800 2998300 1338000 1660300 0 0 0 7866600 4457100 3409500 0 0 0 0 0 0 0 0 0 7769 2681 8080 38846;38847 38802;38803;38804 38803 3 EQWDTIEELIR VLISGEFNDLRKVTKEQWDTIEELIRKTKG KVTKEQWDTIEELIRKTKGS__________ K E Q I R K 0 1 0 1 0 1 3 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 11 0 1430.7042 Q16698 Q16698 320 330 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes yes 2 0.00019716 105.4 By MS/MS By MS/MS 1 1 1.0971 0.98483 32.924 2 Median NaN NaN NaN 0 0 Median 1.4868 1.243 NaN 1 0 Median 0.8096 0.78029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5110500 2273400 2837100 0 0 0 3458400 1412800 2045600 1652200 860640 791530 0 0 0 0 0 0 0 0 0 7770 2994 8081 38848;38849 38805;38806 38806 2 EQWEPVFQNGK SDGLVVGRSDAIGPREQWEPVFQNGKMALL IGPREQWEPVFQNGKMALLASNSCFIRCNE R E Q G K M 0 0 1 0 0 2 2 1 0 0 0 1 0 1 1 0 0 1 0 1 0 0 11 0 1360.6412 Q14331;E9PRR7 Q14331 136 146 FRG1 Protein FRG1 yes no 2 0.028804 31.934 By MS/MS 1 0.99947 0.8503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99947 0.8503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1085000 558860 526150 0 0 0 0 0 0 0 0 0 1085000 558860 526150 0 0 0 0 0 0 7771 2874 8082 38850 38807 38807 1 EQYAQEHGLNFQR GADVCAVLRLSGPLKEQYAQEHGLNFQRLL LKEQYAQEHGLNFQRLLDTSTYKEAFRKDM K E Q Q R L 1 1 1 0 0 3 2 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 13 0 1618.7488 Q15126 Q15126 49 61 PMVK Phosphomevalonate kinase yes yes 3 0.00060715 52.555 By MS/MS By MS/MS 1 1 0.51709 0.45911 105.48 2 Median 0.22942 0.21776 NaN 1 1 Median 1.1655 0.96794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17107000 12564000 4542400 15307000 11746000 3560900 1800300 818790 981540 0 0 0 0 0 0 0 0 0 0 0 0 7772 2931 8083 38851;38852 38808;38809 38809 2 EQYGQYALAVR RNTGEIRTMNNFLDREQYGQYALAVRGSDR FLDREQYGQYALAVRGSDRDGGADGMSAEC R E Q V R G 2 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 2 1 0 0 11 0 1296.6463 Q02413 Q02413 228 238 DSG1 Desmoglein-1 yes yes 2 0.033973 49.418 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7773 2698 8084 38853 38810 38810 1 EQYLELVSAALR LLSHHRRALRLQVSREQYLELVSAALRRPG VSREQYLELVSAALRRPGPSLVLYMVDLLD R E Q L R R 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 1 1 0 0 12 0 1390.7456 Q8NC60 Q8NC60 199 210 NOA1 Nitric oxide-associated protein 1 yes yes 2 0.0050479 42.001 By MS/MS By matching 1 1 0.96472 0.90398 35.17 2 Median 0.70534 0.70494 NaN 1 0 Median 1.3195 1.1592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 976720 515100 461630 557590 297720 259870 419130 217370 201750 0 0 0 0 0 0 0 0 0 0 0 0 7774 3416 8085 38854;38855 38811 38811 1 EQYPGIEIESR CGFEATYLELASAVKEQYPGIEIESRLGGT SAVKEQYPGIEIESRLGGTGAFEIEINGQL K E Q S R L 0 1 0 0 0 1 3 1 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1319.6357 Q9BRT3;J3KTI2 Q9BRT3 48 58 MIEN1 Migration and invasion enhancer 1 yes no 2 0.00013748 85.533 By MS/MS 1 0.91323 0.77375 NaN 1 Median NaN NaN NaN 0 0 Median 0.91323 0.77375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3039700 1607500 1432200 0 0 0 3039700 1607500 1432200 0 0 0 0 0 0 0 0 0 0 0 0 7775 3802 8086 38856 38812;38813 38813 2 EQYQQQQQWGSR NVGLSKCEIKVAMSKEQYQQQQQWGSRGGF MSKEQYQQQQQWGSRGGFAGRARGRGGGPS K E Q S R G 0 1 0 0 0 6 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 12 0 1564.7019 Q14103;H0Y8G5;H0YA96 Q14103 261 272 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2 0.00032936 81.865 By matching By MS/MS By MS/MS 1 1 1 1.1679 1.0362 8.2325 3 Median NaN NaN NaN 0 0 Median 1.2797 1.11 NaN 1 0 Median 0.87255 0.94214 NaN 1 0 Median 1.1679 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046200 2171300 1874900 0 0 0 838600 417760 420840 1778700 1007500 771240 1428900 746120 682820 0 0 0 0 0 0 7776 2854 8087 38857;38858;38859 38814;38815;38816;38817 38814 4 ERDFTSLENTVEER LKDLSDGIHVVKDARERDFTSLENTVEERL RERDFTSLENTVEERLTELTKSINDNIAIF R E R E R L 0 2 1 1 0 0 4 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 14 1 1723.8013 Q07065 Q07065 227 240 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 7.8882E-09 118.08 By MS/MS By matching By matching By matching 2 1 1 1 1.2048 1.3445 35.267 5 Median 0.88503 0.87196 19.01 2 1 Median 1.4881 1.3515 NaN 1 0 Median 1.2048 1.3445 NaN 1 0 Median 2.0837 1.9415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85065000 41502000 43563000 71233000 36261000 34972000 9311200 3380800 5930300 2941900 1332100 1609700 1578900 528120 1050700 0 0 0 0 0 0 7777 2730 8088 38860;38861;38862;38863;38864 38818;38819;38820 38818 3 ERDQGGFGDRNEYGSR YKVQQACEMVMDILRERDQGGFGDRNEYGS RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG R E R S R I 0 3 1 2 0 1 2 4 0 0 0 0 0 1 0 1 0 0 1 0 0 0 16 2 1841.8041 Q92945;A0A087WTP3;M0R0I5 Q92945 305 320 KHSRP Far upstream element-binding protein 2 yes no 3;4 2.4892E-05 75.911 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 4 2 2 1 0.94069 1.0028 15.071 12 Median 0.99749 1.0028 2.169 2 0 Median 0.90084 0.90942 NaN 1 0 Median 0.90916 1.1077 15.004 4 0 Linear 1.136 0.93755 3.566 2 0 Median 1.0528 1.2172 24.519 2 0 Median 1.0921 1.1219 NaN 1 0 Median 40403000 20384000 20019000 3084300 1516000 1568200 1098000 596690 501350 25766000 13593000 12173000 6039500 2578200 3461300 4120100 1941600 2178400 294950 158510 136440 7778 3568 8089 38865;38866;38867;38868;38869;38870;38871;38872;38873;38874;38875;38876 38821;38822;38823;38824;38825;38826;38827;38828 38828 8 ERDVFLVK GKMTWPNNIVKTMSKERDVFLVKEHPDPGS IVKTMSKERDVFLVKEHPDPGSKDPEEDYP K E R V K E 0 1 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 8 1 1004.5655 F5H8F7;Q9UBL3 F5H8F7 91 98 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.028207 73.248 By MS/MS By matching 1 1 1.2119 1.2161 1.2259 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1555 1.2267 NaN 1 0 Median 1.271 1.2056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8709400 4158900 4550500 0 0 0 0 0 0 6827000 3516400 3310600 1882400 642490 1240000 0 0 0 0 0 0 7779 1048 8090 38877;38878 38829 38829 1 ERDVYEELLTQAEIQGNINK DKMTNAKNRTENSERERDVYEELLTQAEIQ EELLTQAEIQGNINKVNTFSALANIDLALE R E R N K V 1 1 2 1 0 2 4 1 0 2 2 1 0 0 0 0 1 0 1 1 0 0 20 1 2361.1812 P46940;A0A0J9YXZ5 P46940 283 302 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.028928 22.01 By MS/MS 1 0.86371 0.81775 NaN 1 Median NaN NaN NaN 0 0 Median 0.86371 0.81775 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4270200 1935600 2334500 0 0 0 4270200 1935600 2334500 0 0 0 0 0 0 0 0 0 0 0 0 7780 2350 8091 38879 38830 38830 1 ERDYPFYER LPPPPPPPLPRDLERERDYPFYERVRPAYS PRDLERERDYPFYERVRPAYSLEPRVGAGA R E R E R V 0 2 0 1 0 0 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 0 9 1 1273.5728 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 286 294 RBM15 Putative RNA-binding protein 15 yes no 3 0.0015513 59.426 By MS/MS By matching By matching 1 1 1 0.834 0.90616 26.761 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7354 0.84974 NaN 1 0 Median 1.4201 1.3902 NaN 1 0 Median 0.834 0.90616 NaN 1 0 Median NaN NaN NaN 0 0 Median 5178700 2625600 2553200 0 0 0 0 0 0 2823400 1504600 1318800 740840 271070 469770 1614500 849900 764570 0 0 0 7781 60 8092 38880;38881;38882 38831 38831 1 EREALEYQR IKLRHFEELETIMDREREALEYQRQQLLAD ETIMDREREALEYQRQQLLADRQAFHMEQL R E R Q R Q 1 2 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 9 1 1192.5836 Q8TAQ2;F8VXC8 Q8TAQ2 916 924 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 0.0061682 52.49 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 317810 0 317810 0 0 0 0 0 0 317810 0 317810 0 0 0 0 0 0 0 0 0 7782 3455 8093 38883 38832 38832 1 EREAVRPGVLR ALPPEQQFEPPLQPREREAVRPGVLRSRAE LQPREREAVRPGVLRSRAEYTEASGPCILT R E R L R S 1 3 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 11 2 1280.7313 Q96SZ5 Q96SZ5 161 171 ADO 2-aminoethanethiol dioxygenase yes yes 3 0.05455 16.914 By matching By matching By MS/MS 1 1 1 1.041 1.0586 14.48 3 Plateau 0.83219 0.80474 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86888 1.0006 NaN 1 0 Median 1.0873 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1498300 797280 701040 268440 161190 107250 0 0 0 485920 256220 229700 743960 379870 364090 0 0 0 0 0 0 7783 3739 8094 38884;38885;38886 38833 38833 1 EREGPSLGPPPVASALSR SRGREPEARPKRELREREGPSLGPPPVASA GPSLGPPPVASALSRADREKAKVEETKRKE R E R S R A 2 2 0 0 0 0 2 2 0 0 2 0 0 0 4 3 0 0 0 1 0 0 18 1 1818.9588 O75150;H3BP71 O75150 616 633 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 0.0028577 40.844 By MS/MS 1 0.51044 0.6208 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51044 0.6208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12542000 8457100 4084500 0 0 0 0 0 0 12542000 8457100 4084500 0 0 0 0 0 0 0 0 0 7784 1648 8095 38887 38834 38834 1 EREHLEMELEK ERLRSENKDIENLRREREHLEMELEKAEME NLRREREHLEMELEKAEMERSTYVTEVREL R E R E K A 0 1 0 0 0 0 5 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 11 1 1441.6871 Q86UP2;G3V4Y7;B7Z6P3;H0YJP2 Q86UP2 1205 1215 KTN1 Kinectin yes no 3 0.00014732 69.229 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.0006 1.02 25.934 7 Median 0.79113 0.81248 32.168 2 0 Median 1.1496 1.0795 3.2669 2 0 Median 0.60916 0.69533 NaN 1 0 Median 1.1199 1.0787 29.941 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23857000 12310000 11547000 3790200 1901300 1888900 13987000 7367100 6620300 1580900 788630 792270 4498400 2252900 2245500 0 0 0 0 0 0 7785 3280 8096 38888;38889;38890;38891;38892;38893;38894 38835;38836;38837;38838;38839 38839 5 ERELQHAALGGTATR KQEELNRKAEELDRRERELQHAALGGTATR ERELQHAALGGTATRQNNWPPLPSFCPVQP R E R T R Q 3 2 0 0 0 1 2 2 1 0 2 0 0 0 0 0 2 0 0 0 0 0 15 1 1608.8332 O14828 O14828 117 131 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 3 0.00012495 50.079 By MS/MS By MS/MS 3 3 1.1388 1.0928 14.175 6 Median 0.95955 1.0427 21.058 3 0 Median 1.2609 1.1452 7.2774 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12676000 5689700 6986500 3749100 1817700 1931300 8927100 3872000 5055200 0 0 0 0 0 0 0 0 0 0 0 0 7786 1498 8097 38895;38896;38897;38898;38899;38900 38840;38841;38842;38843;38844 38844 5 ERELTAQIAAGR SVLESDSVREDLLRRERELTAQIAAGRAEG LRRERELTAQIAAGRAEGSEAAELAEIYAK R E R G R A 3 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 12 1 1313.7052 Q9NUQ8 Q9NUQ8 268 279 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 3 0.00045228 53.252 By matching By matching By MS/MS 1 1 1 0.98801 0.97752 25.67 3 Median 1.2852 1.3177 NaN 1 0 Median 0.98801 0.97752 NaN 1 0 Median 0.7084 0.79052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2909200 1623200 1285900 539710 251200 288500 441120 172240 268870 1928300 1199800 728550 0 0 0 0 0 0 0 0 0 7787 4119 8098 38901;38902;38903 38845 38845 1 EREMAEMR LARERDTSRRLLAEKEREMAEMRARMQQQL RRLLAEKEREMAEMRARMQQQLDEYQELLD K E R M R A 1 2 0 0 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 8 1 1050.4586 P02545;Q3BDU5 P02545 342 349 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.025059 83.783 By MS/MS 4 1.0049 1.0875 14.812 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0049 1.0875 14.812 4 2 Median NaN NaN NaN 0 0 Median 14584000 7448700 7134900 0 0 0 0 0 0 0 0 0 0 0 0 14584000 7448700 7134900 0 0 0 7788 1834;3010 8099 38904;38905;38906;38907 38846;38847;38848 38848 3 ERENLRQEIEK NRTLELQGLINDLQRERENLRQEIEKFQKQ DLQRERENLRQEIEKFQKQALEASNRIQES R E R E K F 0 2 1 0 0 1 4 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 2 1442.7478 P15924 P15924 1776 1786 DSP Desmoplakin yes yes 3 0.030628 22.879 By MS/MS By matching By MS/MS 2 1 2 1.1138 1.0189 31.799 5 Median 1.0279 1.0198 15.305 2 0 Median NaN NaN NaN 0 0 Median 0.43334 0.52075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1691 1.0516 4.4682 2 0 Median 4382700 2083500 2299200 2309700 1080300 1229400 0 0 0 547210 352670 194550 0 0 0 0 0 0 1525800 650530 875260 7789 2021 8100 38908;38909;38910;38911;38912 38849;38850 38850 2 ERENMDTDDER KRQRRRNWKLKELARERENMDTDDERQYQD ELARERENMDTDDERQYQDFLEDLEEDEAI R E R E R Q 0 2 1 3 0 0 3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 11 1 1408.5525 C9JA08;Q96D46 C9JA08 427 437 NMD3 60S ribosomal export protein NMD3 yes no 3 0.011527 29.341 By MS/MS By matching 1 1 1.2411 1.2249 21.48 2 Median NaN NaN NaN 0 0 Median 1.1668 1.0523 NaN 1 0 Median 1.3201 1.4258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 718140 375900 342240 0 0 0 482140 260050 222090 236010 115850 120150 0 0 0 0 0 0 0 0 0 7790 683 8101 38913;38914 38851 38851 1 EREQQDLEFAK PKSYNKDLESAEERREREQQDLEFAKEMAE EERREREQQDLEFAKEMAEDDDDSFP____ R E R A K E 1 1 0 1 0 2 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 11 1 1391.6681 O43242 O43242 513 523 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2;3 0.0033223 64.297 By MS/MS By MS/MS 2 1 1.047 1.0585 45.609 3 Median 1.509 1.5252 51.649 2 1 Median 1.0383 0.95019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9925900 4166600 5759300 5472100 1902200 3569900 4453700 2264400 2189300 0 0 0 0 0 0 0 0 0 0 0 0 7791 1560 8102 38915;38916;38917 38852;38853 38853 2 ERESLQQMAEVTR SGVICENTCKEKGRKERESLQQMAEVTREG RKERESLQQMAEVTREGFRLKKILIEDWKK K E R T R E 1 2 0 0 0 2 3 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 13 1 1575.7675 K7ELL7;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 123 135 PRKCSH Glucosidase 2 subunit beta yes no 2;3 3.6821E-95 271.32 By MS/MS By matching 3 1 0.93804 0.92419 18.689 4 Median 0.95274 0.93867 17.119 3 0 Plateau 1.1819 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42526000 21600000 20926000 35631000 18569000 17062000 6895600 3030600 3865000 0 0 0 0 0 0 0 0 0 0 0 0 7792 1378 8103 38918;38919;38920;38921 38854;38855 38855 2 EREVDEDSEPER REAPASVVPFVRVKREREVDEDSEPEREVR VKREREVDEDSEPEREVRAKNGRVDSEDRR R E R E R E 0 2 0 2 0 0 5 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 12 1 1488.6328 B9A018;Q53GS9;F8WC91 B9A018 75 86 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.010857 26.969 By MS/MS By matching 1 1 1.0733 1.0945 9.9908 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0526 1.1746 NaN 1 0 Median 1.0945 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1025400 445240 580150 0 0 0 0 0 0 891280 390020 501260 134110 55218 78887 0 0 0 0 0 0 7793 654 8104 38922;38923 38856;38857 38857 2 EREVLQLQEEVK QARKAEEVQAWAQRKEREVLQLQEEVKNFI QRKEREVLQLQEEVKNFITRENLEARVEAA K E R V K N 0 1 0 0 0 2 4 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 12 1 1498.7991 Q9BYN8 Q9BYN8 154 165 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 3 0.00019944 66.023 By matching By MS/MS By matching 1 1 1 1.0635 1.0813 12.337 3 Plateau 1.0798 1.1343 NaN 1 0 Median 1.0195 0.95153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9951 0.89415 NaN 1 0 Median 6753900 3245200 3508700 3912400 1958900 1953400 2255300 1026900 1228300 0 0 0 0 0 0 0 0 0 586270 259340 326920 7794 3894 8105 38924;38925;38926 38858 38858 1 ERFAGVDIR TLQYKLLEPVLLLGKERFAGVDIRVRVKGG VLLLGKERFAGVDIRVRVKGGGHVAQIYAI K E R I R V 1 2 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 1 1061.5618 P62249;M0R210;M0R3H0;M0R1M5;Q6IPX4;M0QX76 P62249 61 69 RPS16 40S ribosomal protein S16 yes no 2 0.015469 66.27 By MS/MS 1 0.72367 0.75853 NaN 1 Median 0.72367 0.75853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6250700 3028000 3222700 6250700 3028000 3222700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7795 2574 8106 38927 38859;38860 38859 2 ERFGIVTSSAGTGTTEDTEAK ISRKSEDDEKLKKRKERFGIVTSSAGTGTT TSSAGTGTTEDTEAKKRKRAERFGIA____ K E R A K K 2 1 0 1 0 0 3 3 0 1 0 1 0 1 0 2 5 0 0 1 0 0 21 1 2156.0233 P82979;H0YHG0 P82979 179 199 SARNP SAP domain-containing ribonucleoprotein yes no 3 4.4823E-12 73.405 By MS/MS 1 1.1773 1.111 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1773 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4341900 1997100 2344800 0 0 0 0 0 0 0 0 0 4341900 1997100 2344800 0 0 0 0 0 0 7796 2661 8107 38928 38861;38862 38862 2 ERFSPLTTNLINLLAENGR KRSIKVKSLNDITAKERFSPLTTNLINLLA PLTTNLINLLAENGRLSNTQGVVSAFSTMM K E R G R L 1 2 3 0 0 0 2 1 0 1 4 0 0 1 1 1 2 0 0 0 0 0 19 1 2157.1542 P48047;A0A494C0K9;H7C0C1 P48047 99 117 ATP5O ATP synthase subunit O, mitochondrial yes no 3 0.00069253 31.111 By MS/MS By matching By MS/MS 1 1 1 1.0754 1.1123 7.3855 3 Median 0.97577 1.043 NaN 1 0 Median 1.3098 1.1123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0754 1.2086 NaN 1 0 Median NaN NaN NaN 0 0 Median 4586700 2206400 2380200 2109000 1013500 1095500 104040 48140 55898 0 0 0 0 0 0 2373700 1144800 1228900 0 0 0 7797 2358 8108 38929;38930;38931 38863;38864;38865 38865 3 ERGDQTVLILHAK PPKRLTREAMRNYLKERGDQTVLILHAKVA LKERGDQTVLILHAKVAQKSYGNEKRFFCP K E R A K V 1 1 0 1 0 1 1 1 1 1 2 1 0 0 0 0 1 0 0 1 0 0 13 1 1478.8205 Q06330;D6R927;D6RB37;D6RBQ8;D6R946;D6RA45;D6RCM1;D6REP3;D6RIV8;D6RAT2;D6RIZ8;D6R9X3;D6R9K5;D6REC2;D6RF98 Q06330 42 54 RBPJ Recombining binding protein suppressor of hairless yes no 3 0.00040582 56.569 By MS/MS By MS/MS 1 1 1.1313 1.159 4.6583 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.071 1.1978 NaN 1 0 Median 1.195 1.1214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17364000 8009900 9354300 0 0 0 0 0 0 5515300 2449400 3065900 11849000 5560600 6288400 0 0 0 0 0 0 7798 2725 8109 38932;38933 38866;38867;38868 38867 3 ERGDYVLAVK KHVGNQQYNVTYVVKERGDYVLAVKWGEEH TYVVKERGDYVLAVKWGEEHIPGSPFHVTV K E R V K W 1 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 10 1 1148.619 O75369;E7EN95;A0A0A0MT44 O75369 2577 2586 FLNB Filamin-B yes no 2 0.003333 109.02 By MS/MS By MS/MS 1 1 1.1019 1.0728 8.5578 2 Median 1.1106 1.1397 NaN 1 0 Median 1.0933 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20293000 9550500 10742000 3302400 1355300 1947100 16991000 8195300 8795300 0 0 0 0 0 0 0 0 0 0 0 0 7799 1664 8110 38934;38935 38869;38870;38871 38871 3 ERHPGSFDVVHVK TGGANLGRIGVITNRERHPGSFDVVHVKDA NRERHPGSFDVVHVKDANGNSFATRLSNIF R E R V K D 0 1 0 1 0 0 1 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 13 1 1505.7739 P62701 P62701 199 211 RPS4X 40S ribosomal protein S4, X isoform no no 2;3 2.3125E-07 103.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 3 1 1 1.1859 1.0861 54.339 8 Median 2.1369 2.213 111.49 2 1 Median 1.0623 0.96451 2.3546 2 0 Median 1.3555 1.4024 NaN 1 0 Median 1.1711 1.1124 NaN 1 0 Median 1.4209 1.5027 NaN 1 1 Median 1.2009 1.0604 NaN 1 0 Median 127140000 36640000 90499000 72572000 10701000 61871000 38223000 19108000 19115000 4174400 1595400 2579000 1609600 697490 912090 4902000 1879100 3023000 5658000 2659200 2998800 7800 2593 8111 38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946 38872;38873;38874;38875;38876;38877;38878;38879;38880;38881;38882;38883;38884 38879 13 ERIDFLPHYDTLVK YLLQSVNQLLLTATKERIDFLPHYDTLVKS KERIDFLPHYDTLVKSGMYEYYASEGQNPL K E R V K S 0 1 0 2 0 0 1 0 1 1 2 1 0 1 1 0 1 0 1 1 0 0 14 1 1744.9148 A6NHR9 A6NHR9 113 126 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.00091966 40.552 By MS/MS By matching 1 1 0.9166 0.98621 4.7464 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85049 1.0199 NaN 1 0 Median 0.98785 0.95366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6164300 3730800 2433500 0 0 0 0 0 0 6052900 3677500 2375400 111440 53346 58092 0 0 0 0 0 0 7801 518 8112 38947;38948 38885;38886 38886 2 ERLDQPMTEIVSR VSMLYSFFMPAAKLKERLDQPMTEIVSRVS LKERLDQPMTEIVSRVSKRKLGRHVRALVL K E R S R V 0 2 0 1 0 1 2 0 0 1 1 0 1 0 1 1 1 0 0 1 0 0 13 1 1572.793 P22314;Q5JRR6 P22314 1009 1021 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 1.6898E-29 166.7 By MS/MS By MS/MS 3 1 0.89174 0.99075 7.2519 4 Median 0.86342 0.95928 3.7906 3 2 Median 1.1583 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71111000 35595000 35515000 66299000 33416000 32883000 4812100 2179500 2632600 0 0 0 0 0 0 0 0 0 0 0 0 7802 2100 8113;8114 38949;38950;38951;38952 38887;38888;38889;38890 38888 861 4 ERLEQDLQQMQAK MNVVMETNKMLREEKERLEQDLQQMQAKVR EKERLEQDLQQMQAKVRKLELDILPLQEAN K E R A K V 1 1 0 1 0 4 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 13 1 1615.7988 P12270 P12270 1284 1296 TPR Nucleoprotein TPR yes yes 2;3 7.3766E-05 80.318 By matching By MS/MS By MS/MS By matching By matching 1 2 3 1 1 0.80922 0.86246 41.249 8 Median NaN NaN NaN 0 0 Median 0.91075 0.86263 NaN 1 0 Median 0.96286 1.1545 41.269 2 0 Median 1.0993 1.0239 34.795 3 1 Median 0.60819 0.62454 NaN 1 0 Median 0.47624 0.42404 NaN 1 0 Median 25552000 12976000 12576000 0 0 0 2933700 1870800 1062900 15553000 7414500 8138500 4042200 1939500 2102700 1391800 726820 664990 1630900 1024400 606470 7803 1978 8115 38953;38954;38955;38956;38957;38958;38959;38960 38891;38892;38893;38894 38891 4 ERLEQELALEER NAVLQRHTQSMSSARERLEQELALEERRTL SARERLEQELALEERRTLALQQQLQAVRQA R E R E R R 1 2 0 0 0 1 5 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 12 1 1513.7736 Q9P0W2;B5MDG7;K7EJR8 Q9P0W2 232 243 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 2 1.033E-06 119.45 By MS/MS 1 0.75666 0.78976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75666 0.78976 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9791800 5429000 4362800 0 0 0 0 0 0 9791800 5429000 4362800 0 0 0 0 0 0 0 0 0 7804 4210 8116 38961 38895 38895 1 ERLEQEQLER ERLERERLERERLERERLEQEQLERERQER ERLERERLEQEQLERERQERERQERLERQE R E R E R E 0 2 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1328.6684 A0A0U1RRM6;Q8N8S7;A0A075B6E5;A0A0U1RQP7 A0A0U1RRM6 188 197 ENAH Protein enabled homolog yes no 2;3 0.00010732 125.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 4 1 0.96475 0.94882 37.012 11 Median 0.90566 0.92857 0.71828 2 0 Median 0.69366 0.68629 40.166 3 2 Median 1.0778 1.2027 15.668 2 0 Median 1.1975 1.0881 17.167 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34552000 17621000 16931000 8432900 4314600 4118300 11188000 6404000 4783600 10395000 4942600 5452400 4536900 1960300 2576600 0 0 0 0 0 0 7805 313 8117 38962;38963;38964;38965;38966;38967;38968;38969;38970;38971;38972;38973;38974 38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906 38905 11 ERLEQQVPVNQVFGQDEMIDVIGVTK QVNGGTVAEKLDWARERLEQQVPVNQVFGQ VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R E R T K G 0 1 1 2 0 4 3 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 26 1 2970.5121 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2 P39023 199 224 RPL3 60S ribosomal protein L3 yes no 3 2.0639E-25 79.395 By MS/MS By matching By MS/MS By matching By MS/MS By matching 7 3 2 2 3 1 0.93674 0.96333 28.949 17 Median 0.86138 0.9012 27.69 6 1 Median 0.9332 0.90384 49.318 3 0 Median 0.97364 1.0457 8.6784 2 0 Median 1.0922 1.0573 6.2256 2 0 Median 0.89498 0.96333 12.751 3 0 Median 1.3992 1.2825 NaN 1 0 Median 123100000 67175000 55922000 80681000 45068000 35614000 1975000 1004100 970890 20365000 10705000 9659800 1379400 655270 724150 17798000 9265000 8533300 898010 477570 420440 7806 2281 8118;8119 38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992 38907;38908;38909;38910;38911;38912;38913;38914;38915;38916 38911 1037 10 ERPAYAVHGNMLHYVK AAGHDGGMIVFKLERERPAYAVHGNMLHYV RPAYAVHGNMLHYVKDRFLRQLDFNSSKDV R E R V K D 2 1 1 0 0 0 1 1 2 0 1 1 1 0 1 0 0 0 2 2 0 0 16 1 1883.9465 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 322 337 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3;4 1.307E-06 74.772 By MS/MS By MS/MS By MS/MS 5 4 1 1.0592 0.97799 34.626 9 Median 1.0425 1.0855 17.795 4 0 Median 0.95416 0.8815 47.201 4 2 Median NaN NaN NaN 0 0 Median 1.072 1.0302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99864000 50120000 49744000 35643000 15961000 19682000 61815000 33075000 28739000 0 0 0 2406400 1084100 1322300 0 0 0 0 0 0 7807 2473 8120 38993;38994;38995;38996;38997;38998;38999;39000;39001;39002 38917;38918;38919;38920;38921;38922;38923;38924;38925;38926 38924 10 ERPGLGSENMDR KGKKLNIGGGGLGYRERPGLGSENMDRGNN GYRERPGLGSENMDRGNNNVMSNYEAYKPS R E R D R G 0 2 1 1 0 0 2 2 0 0 1 0 1 0 1 1 0 0 0 0 0 0 12 1 1359.6201 Q86XP3;A0A0A0MSJ0 Q86XP3 662 673 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 0.00044312 53.6 By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 0.81542 0.84187 16.818 6 Median NaN NaN NaN 0 0 Median 1.1955 1.1128 15.887 2 0 Median 0.69093 0.81907 2.3065 2 0 Median 0.86956 0.85129 NaN 1 0 Median 0.76464 0.8308 NaN 1 0 Median NaN NaN NaN 0 0 Median 10173000 5420500 4752900 0 0 0 3609700 1552900 2056900 4242900 2610100 1632800 930560 491230 439340 1390200 766320 623870 0 0 0 7808 3302 8121 39003;39004;39005;39006;39007;39008 38927;38928;38929;38930;38931 38931 5 ERPISLGIFPLPAGDGLLTPDAQK GSDQLESTAHSRIRKERPISLGIFPLPAGD PLPAGDGLLTPDAQKGGETPGSEQWKFQEL K E R Q K G 2 1 0 2 0 1 1 3 0 2 4 1 0 1 4 1 1 0 0 0 0 0 24 1 2504.3639 A0A087X2D8;O60271;D6RHI8 A0A087X2D8 199 222 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 0.0023927 25.407 By MS/MS By MS/MS By matching 2 4 1 0.67076 0.63304 25.185 7 Median 0.49893 0.5106 6.3594 2 0 Median 0.71869 0.66913 24.361 4 0 Median 0.67076 0.77022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27925000 16720000 11204000 15132000 9775600 5356600 12487000 6792000 5694600 306050 152950 153100 0 0 0 0 0 0 0 0 0 7809 134 8122 39009;39010;39011;39012;39013;39014;39015 38932;38933;38934;38935;38936;38937;38938 38934 7 ERPPAPSSFVFQEETK TQSGGTEAEAVPAQKERPPAPSSFVFQEET RPPAPSSFVFQEETKEQSKMEDTLEHTDKE K E R T K E 1 1 0 0 0 1 3 0 0 0 0 1 0 2 3 2 1 0 0 1 0 0 16 1 1847.9054 Q02952 Q02952 1219 1234 AKAP12 A-kinase anchor protein 12 yes yes 3 5.9002E-07 88.133 By MS/MS By MS/MS 1 1 1.1108 1.0934 66.22 2 Median 1.6685 1.7464 NaN 1 1 Median 0.73957 0.68459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35086000 16150000 18936000 22500000 9731100 12769000 12586000 6418800 6167000 0 0 0 0 0 0 0 0 0 0 0 0 7810 2705 8123 39016;39017 38939;38940;38941 38940 3 ERPPAPSSFVFQEETKEQSK TQSGGTEAEAVPAQKERPPAPSSFVFQEET PSSFVFQEETKEQSKMEDTLEHTDKEVSVE K E R S K M 1 1 0 0 0 2 4 0 0 0 0 2 0 2 3 3 1 0 0 1 0 0 20 2 2320.1335 Q02952 Q02952 1219 1238 AKAP12 A-kinase anchor protein 12 yes yes 3;4 3.6091E-39 153.04 By MS/MS By MS/MS 4 1 0.681 0.7411 14.406 5 Median 0.66725 0.72614 16.624 4 2 Median 0.70879 0.75513 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106100000 60221000 45876000 98117000 55508000 42609000 7980000 4713200 3266800 0 0 0 0 0 0 0 0 0 0 0 0 7811 2705 8124 39018;39019;39020;39021;39022 38942;38943;38944;38945;38946;38947;38948 38948 7 ERPSQPEGLRK ATKRSFSKEVEERSRERPSQPEGLRKAASL ERSRERPSQPEGLRKAASLTEDRDRGRDAV R E R R K A 0 2 0 0 0 1 2 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 11 2 1295.6946 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1033 1043 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.02075 25.342 By MS/MS By matching 1 1 0.79059 0.92312 17.783 2 Median NaN NaN NaN 0 0 Median 0.71752 0.81404 NaN 1 0 Median 0.87111 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 764160 411980 352180 0 0 0 564560 315880 248680 199590 96102 103490 0 0 0 0 0 0 0 0 0 7812 894 8125 39023;39024 38949;38950 38949 2 ERPSSAIYPSDSFR TALQSVSLRSKTTIRERPSSAIYPSDSFRQ RERPSSAIYPSDSFRQSLLGSRRGRSSLSL R E R F R Q 1 2 0 1 0 0 1 0 0 1 0 0 0 1 2 4 0 0 1 0 0 0 14 1 1610.7689 V9GYM8;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 163 176 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 3 0.0026725 35.35 By MS/MS By matching 1 2 1.4184 1.2701 36.612 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71457 0.77601 NaN 1 0 Median 1.5164 1.4198 15.756 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6520300 3633400 2886800 0 0 0 0 0 0 4014400 2489300 1525100 2505900 1144100 1361800 0 0 0 0 0 0 7813 4562 8126 39025;39026;39027 38951 38951 1 ERPTPSLNNNCTTSEDSLVLYNR TKVEATKNETSAPFKERPTPSLNNNCTTSE NNCTTSEDSLVLYNRVAVQGDVVRELKAKK K E R N R V 0 2 4 1 1 0 2 0 0 0 3 0 0 0 2 3 3 0 1 1 0 0 23 1 2679.2559 P07814;V9GYZ6 P07814 734 756 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 7.046E-18 78.324 By MS/MS 2 0.88188 0.83719 0.93704 2 Median NaN NaN NaN 0 0 Median 0.88188 0.83719 0.93704 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3962500 1864400 2098100 0 0 0 3962500 1864400 2098100 0 0 0 0 0 0 0 0 0 0 0 0 7814 1892 8127 39028;39029 38952;38953 38953 2 ERQEAEEAKEALLQASR QERKRAQSEAEKLAKERQEAEEAKEALLQA QEAEEAKEALLQASRDQKKTQEQLALEMAE K E R S R D 4 2 0 0 0 2 5 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 17 2 1956.9865 P26038 P26038 392 408 MSN Moesin yes yes 3;4 8.7989E-13 128.59 By MS/MS By MS/MS 4 2 1.0399 1.1252 16.969 6 Median 1.1004 1.11 20.786 4 1 Median NaN NaN NaN 0 0 Median 1.003 1.1252 6.1915 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173660000 75412000 98246000 120530000 53636000 66893000 0 0 0 53128000 21776000 31353000 0 0 0 0 0 0 0 0 0 7815 2139 8128 39030;39031;39032;39033;39034;39035 38954;38955;38956;38957;38958;38959;38960;38961 38955 7 ERQMAMQIAWSREFLK RLQLERQLIMQSEMRERQMAMQIAWSREFL RQMAMQIAWSREFLKYFGTFFGLAAISLTA R E R L K Y 2 2 0 0 0 2 2 0 0 1 1 1 2 1 0 1 0 1 0 0 0 0 16 2 2023.0132 Q9HBL7 Q9HBL7 40 55 PLGRKT Plasminogen receptor (KT) yes yes 3 0.065356 10.593 By MS/MS By MS/MS 1 1 1.0988 0.97742 14.571 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1879 1.0835 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0163 0.88172 NaN 1 0 Median 55264000 24040000 31224000 0 0 0 0 0 0 0 0 0 43604000 18547000 25057000 0 0 0 11659000 5492700 6166500 7816 4020 8129 39036;39037 38962;38963 38963 2 ERSDTFINLR NIHLSKNFFLTNRARERSDTFINLREVLNR TNRARERSDTFINLREVLNRFKLPPGEYIL R E R L R E 0 2 1 1 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 10 1 1249.6415 P17655 P17655 460 469 CAPN2 Calpain-2 catalytic subunit yes yes 3 0.00018912 73.067 By MS/MS 1 0.87921 0.90145 NaN 1 Median 0.87921 0.90145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4121600 2377500 1744100 4121600 2377500 1744100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7817 2045 8130 39038 38964;38965 38964 2 ERSGVSLAALK PPVSELITKAVAASKERSGVSLAALKKALA AASKERSGVSLAALKKALAAAGYDVEKNNS K E R L K K 2 1 0 0 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1129.6455 P10412;P16402;P16403 P16402 54 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.00054445 132.01 By matching By MS/MS By MS/MS 1 2 2 1.3102 1.1518 24.13 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9221 1.7015 NaN 1 0 Median 0.90129 0.95705 4.6168 2 0 Median 1.3718 1.2211 8.257 2 0 Median 111230000 55702000 55530000 0 0 0 0 0 0 0 0 0 1782600 513940 1268600 88704000 46192000 42513000 20745000 8996600 11749000 7818 2028;1937;2029 8131 39039;39040;39041;39042;39043 38966;38967;38968;38969;38970;38971 38968 6 ERSGVSLAALKK PPVSELITKAVAASKERSGVSLAALKKALA ASKERSGVSLAALKKALAAAGYDVEKNNSR K E R K K A 2 1 0 0 0 0 1 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 12 2 1257.7405 P10412;P16402;P16403 P16402 54 65 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 2.0309E-06 135.8 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 10 4 0.92951 1.0491 20.696 19 Median 1.4619 1.5143 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0473 1.184 26.937 2 0 Median 1.8152 1.6244 14.752 2 0 Median 0.89168 1.0382 11.852 10 0 Median 1.0998 1.0752 11.512 4 0 Median 458510000 234640000 223880000 2939000 1189300 1749700 0 0 0 1342000 578660 763310 10856000 3735700 7120300 420930000 219940000 200990000 22442000 9189000 13253000 7819 2028;1937;2029 8132 39044;39045;39046;39047;39048;39049;39050;39051;39052;39053;39054;39055;39056;39057;39058;39059;39060;39061;39062 38972;38973;38974;38975;38976;38977;38978;38979;38980;38981;38982;38983;38984;38985;38986;38987;38988;38989;38990;38991;38992;38993;38994 38978 22 ERSPEVLSGGEDGAVR VLRGHTDYIHCLALRERSPEVLSGGEDGAV RSPEVLSGGEDGAVRLWDLRTAKEVQTIEV R E R V R L 1 2 0 1 0 0 3 3 0 0 1 0 0 0 1 2 0 0 0 2 0 0 16 1 1656.8067 Q86W42 Q86W42 178 193 THOC6 THO complex subunit 6 homolog yes yes 3 3.994E-05 66.022 By MS/MS By MS/MS 1 1 0.91667 0.87867 20.11 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73025 0.7622 NaN 1 0 Median 1.1507 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12169000 6466500 5702700 0 0 0 0 0 0 8396700 4780600 3616100 3772500 1685800 2086600 0 0 0 0 0 0 7820 3290 8133 39063;39064 38995;38996;38997;38998 38998 4 ERTEEPMETEPK EPPEGEEKVEKAEVKERTEEPMETEPKGAA EVKERTEEPMETEPKGAADVEKVEEKSAID K E R P K G 0 1 0 0 0 0 5 0 0 0 0 1 1 0 2 0 2 0 0 0 0 0 12 1 1474.661 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;A0A2R8Y6G9 Q14839 1625 1636 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.01256 26.541 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.75431 0.79018 9.1701 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67307 0.79018 4.7363 2 0 Median 0.93779 0.88928 5.3112 2 0 Median 0.64292 0.73033 NaN 1 0 Median 0.83511 0.74017 NaN 1 0 Median 8731700 4996200 3735500 0 0 0 0 0 0 5385100 3075000 2310100 1185600 619930 565700 1959600 1186000 773630 201420 115340 86079 7821 246 8134 39065;39066;39067;39068;39069;39070 38999;39000;39001;39002;39003;39004 39003 6 ERVEAVNMAEGIIHDTETK VKNAEKYAEEDRRKKERVEAVNMAEGIIHD AVNMAEGIIHDTETKMEEFKDQLPADECNK K E R T K M 2 1 1 1 0 0 4 1 1 2 0 1 1 0 0 0 2 0 0 2 0 0 19 1 2141.0423 P38646 P38646 577 595 HSPA9 Stress-70 protein, mitochondrial yes yes 3 7.4813E-07 56.055 By MS/MS By matching 1 1 1.2228 1.1717 12.108 2 Median 1.0718 1.0756 NaN 1 0 Median 1.3951 1.2765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13543000 5640800 7901900 8875800 3717500 5158300 4666900 1923300 2743600 0 0 0 0 0 0 0 0 0 0 0 0 7822 2277 8135 39071;39072 39005;39006 39006 2 ERYDNLEMEYLQK GYVSQLKSVDKSSNRERYDNLEMEYLQKRS NRERYDNLEMEYLQKRSDLLSPLLSLGQYL R E R Q K R 0 1 1 1 0 1 3 0 0 0 2 1 1 0 0 0 0 0 2 0 0 0 13 1 1729.7981 Q8WUM0 Q8WUM0 830 842 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 7.3826E-05 85.958 By MS/MS By matching 2 1 1.1511 1.3048 31.87 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1647 1.3203 1.67 2 0 Median 0.66732 0.76053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26964000 12898000 14066000 0 0 0 0 0 0 26149000 12493000 13656000 814430 404670 409760 0 0 0 0 0 0 7823 3492 8136 39073;39074;39075 39007;39008 39008 2 ESAAHDYTLR YALKEYGVMRVRNVKESAAHDYTLRELKLS VRNVKESAAHDYTLRELKLSKVGQALLQGN K E S L R E 2 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1161.5415 Q06124;A0A0U1RRI0 Q06124 390 399 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.00036109 82.749 By MS/MS 1 1.2658 1.0969 NaN 1 Median NaN NaN NaN 0 0 Median 1.2658 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2442600 1089100 1353400 0 0 0 2442600 1089100 1353400 0 0 0 0 0 0 0 0 0 0 0 0 7824 2721 8137 39076 39009;39010;39011 39010 3 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR AATVASATGDSASERESAAPAAAPTAEAPP VTRPEPQALPSPAIRAPLPDLYPFGTMRGG R E S I R A 9 2 0 0 0 1 3 0 0 1 1 0 0 0 9 3 2 0 0 2 0 0 33 1 3245.7044 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 36 68 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3;4 6.7572E-107 162.07 By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 0.19768 0.20764 19.008 5 Median 0.19768 0.20268 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.22372 0.24965 26.061 2 1 Median 0.29268 0.25935 NaN 1 0 Median 0.17659 0.19187 NaN 1 0 Median NaN NaN NaN 0 0 Median 163110000 142970000 20140000 5690800 5021600 669270 0 0 0 148530000 130830000 17697000 1880600 1415200 465450 7013700 5704900 1308800 0 0 0 7825 343 8138 39077;39078;39079;39080;39081;39082 39012;39013;39014;39015;39016;39017 39015 6 ESADGLQGETQLLVSR YCRKSGLQTDYATEKESADGLQGETQLLVS SADGLQGETQLLVSRKSRPKSGGSGHAVAE K E S S R K 1 1 0 1 0 2 2 2 0 0 3 0 0 0 0 2 1 0 0 1 0 0 16 0 1701.8533 P46013 P46013 275 290 MKI67 Antigen KI-67 yes yes 2 3.4417E-10 112.43 By MS/MS 2 1.016 1.0954 21.784 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.016 1.0954 21.784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14385000 6371300 8014100 0 0 0 0 0 0 14385000 6371300 8014100 0 0 0 0 0 0 0 0 0 7826 2335 8139 39083;39084 39018;39019 39018 2 ESADPLGAWLQDAR QRELEQLGRQLRYYRESADPLGAWLQDARR RESADPLGAWLQDARRRQEQIQAMPLADSQ R E S A R R 3 1 0 2 0 1 1 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 14 0 1527.7318 Q15149;H0YDN1 Q15149 1351 1364 PLEC Plectin yes no 2 8.9438E-06 91.313 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1.157 1.0816 20.051 7 Median 1.3327 1.3136 36.076 2 0 Median 1.157 0.97665 NaN 1 0 Median 1.0634 1.1685 21.12 2 0 Median 1.2476 1.0816 NaN 1 0 Median 1.1472 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median 39391000 18492000 20899000 26744000 12418000 14326000 4593500 1999200 2594300 4800700 2482600 2318100 91230 44542 46687 3161800 1548200 1613500 0 0 0 7827 2933 8140 39085;39086;39087;39088;39089;39090;39091 39020;39021;39022;39023;39024;39025;39026;39027 39022 8 ESAEFQTQLEK QVTEEVRKNIEVRLKESAEFQTQLEKKLME VRLKESAEFQTQLEKKLMEVEKEKQELQDD K E S E K K 1 0 0 0 0 2 3 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1308.6198 P12270 P12270 996 1006 TPR Nucleoprotein TPR yes yes 2 0.0057072 45.598 By MS/MS By matching 1 2 1.5597 1.3835 23.513 3 Median NaN NaN NaN 0 0 Median 1.5597 1.3835 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5463 1.432 33.134 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4892000 1953700 2938300 0 0 0 2590000 1010700 1579400 0 0 0 2302000 943050 1359000 0 0 0 0 0 0 7828 1978 8141 39092;39093;39094 39028 39028 1 ESAEQSSGPGPSLRPQNSTTWR TLQAAGDQDKAAKERESAEQSSGPGPSLRP GPGPSLRPQNSTTWRDGGGRGPDELEGPDS R E S W R D 1 2 1 0 0 2 2 2 0 0 1 0 0 0 3 5 2 1 0 0 0 0 22 1 2371.1153 P48634 P48634 187 208 PRRC2A Protein PRRC2A yes yes 3 3.6632E-08 50.425 By MS/MS By MS/MS By MS/MS 1 1 1 0.67925 0.68197 4.1576 3 Median 0.63771 0.68197 NaN 1 0 Median 0.67925 0.68593 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70292 0.63654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14524000 8287200 6237300 8106300 4589200 3517100 4272400 2545300 1727000 0 0 0 2145800 1152700 993160 0 0 0 0 0 0 7829 2363 8142 39095;39096;39097 39029;39030;39031;39032;39033 39029 5 ESAINVAEGK ERRKRATVLESEGTRESAINVAEGKKQAQI SEGTRESAINVAEGKKQAQILASEAEKAEQ R E S G K K 2 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1016.5138 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 212 221 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.041168 45.368 By MS/MS 1 1.4057 1.1982 NaN 1 Median NaN NaN NaN 0 0 Median 1.4057 1.1982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9526500 4057200 5469300 0 0 0 9526500 4057200 5469300 0 0 0 0 0 0 0 0 0 0 0 0 7830 4304 8143 39098 39034 39034 1 ESAINVAEGKK ERRKRATVLESEGTRESAINVAEGKKQAQI EGTRESAINVAEGKKQAQILASEAEKAEQI R E S K K Q 2 0 1 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 11 1 1144.6088 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 212 222 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.00050727 71.349 By MS/MS 1 1.4817 1.3431 NaN 1 Median NaN NaN NaN 0 0 Median 1.4817 1.3431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1949500 734300 1215200 0 0 0 1949500 734300 1215200 0 0 0 0 0 0 0 0 0 0 0 0 7831 4304 8144 39099 39035 39035 1 ESAIQGSLASLEAEQASIR KLQALQADYQALQQRESAIQGSLASLEAEQ QGSLASLEAEQASIRHLGDQMEASLLAVRK R E S I R H 4 1 0 0 0 2 3 1 0 2 2 0 0 0 0 4 0 0 0 0 0 0 19 0 1958.9909 Q9BQS8 Q9BQS8 653 671 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 2 2.2123E-10 80.522 By MS/MS 2 0.6998 0.70057 20.941 2 Median 0.6998 0.70057 20.941 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3768300 2124600 1643700 3768300 2124600 1643700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7832 3791 8145 39100;39101 39036;39037 39036 2 ESAIVSRPLNPFTAK QRAASQDHVRGFLEKESAIVSRPLNPFTAK ESAIVSRPLNPFTAKALSGTSPDDVQPGPS K E S A K A 2 1 1 0 0 0 1 0 0 1 1 1 0 1 2 2 1 0 0 1 0 0 15 1 1628.8886 Q9Y314;M0R3B2;A0A075B6F9;A0A075B797;M0R1K2 Q9Y314 118 132 NOSIP Nitric oxide synthase-interacting protein yes no 2;3 3.812E-07 127.56 By MS/MS By matching By matching By MS/MS 3 2 1 2 0.80475 0.77155 22.046 8 Median 0.87524 0.88245 17.226 3 0 Plateau 0.89085 0.82852 22.178 2 0 Median 1.0831 1.1803 NaN 1 0 Median 0.69757 0.6583 1.2977 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44769000 25561000 19208000 29287000 16609000 12677000 1559900 888290 671620 3293600 1621200 1672300 10629000 6442600 4186700 0 0 0 0 0 0 7833 4401 8146 39102;39103;39104;39105;39106;39107;39108;39109 39038;39039;39040;39041;39042 39041 5 ESAKPEISAMSAHDK DVERNSTEAERNKTRESAKPEISAMSAHDK ESAKPEISAMSAHDKAALSEEELERKSKSI R E S D K A 3 0 0 1 0 0 2 0 1 1 0 2 1 0 1 3 0 0 0 0 0 0 15 1 1599.7563 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1389 1403 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 3 0.036357 16.399 By matching By MS/MS By matching 1 1 1 0.72679 0.7144 13.566 3 Median 0.72679 0.7444 NaN 1 0 Median 0.59253 0.57811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76809 0.7144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1895400 1116700 778680 629980 373650 256320 936960 556970 379990 0 0 0 328430 186060 142370 0 0 0 0 0 0 7834 300 8147 39110;39111;39112 39043 39043 1 ESALKETLLQEK QLDQLIEALNSRGHRESALKETLLQEKSRI GHRESALKETLLQEKSRICAQLARFSEEKF R E S E K S 1 0 0 0 0 1 3 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 12 1 1387.7559 Q9NRL2 Q9NRL2 915 926 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 1.6222E-05 111.06 By MS/MS 2 0.92134 1.0174 25.308 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92134 1.0174 25.308 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12965000 5578900 7386400 0 0 0 0 0 0 12965000 5578900 7386400 0 0 0 0 0 0 0 0 0 7835 4084 8148 39113;39114 39044 39044 1 ESAPFAVIGSNTVVEAK SDEDEDFKQQDRELKESAPFAVIGSNTVVE APFAVIGSNTVVEAKGQRVRGRLYPWGIVE K E S A K G 3 0 1 0 0 0 2 1 0 1 0 1 0 1 1 2 1 0 0 3 0 0 17 0 1717.8887 C9JM82;B4DJ62;G3XAH0;Q99719;E7EPG2;E7EX32 C9JM82 193 209 SEPT5 Septin-5 yes no 2 6.4797E-05 50.207 By MS/MS By matching 1 1 1.0712 1.0022 41.653 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72197 0.7465 NaN 1 0 Median 1.5894 1.3454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10012000 4980200 5032300 0 0 0 0 0 0 9718300 4878500 4839700 294180 101640 192540 0 0 0 0 0 0 7836 592 8149 39115;39116 39045;39046 39046 2 ESAQAIEDLAGFK AASVTGSRRRPRAPRESAQAIEDLAGFKDP PRESAQAIEDLAGFKDPAAGHTEESMTDDK R E S F K D 3 0 0 1 0 1 2 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1377.6776 P46013 P46013 2792 2804 MKI67 Antigen KI-67 yes yes 2 0.0017637 50.284 By MS/MS 1 0.85253 0.92341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85253 0.92341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3484700 1936300 1548400 0 0 0 0 0 0 3484700 1936300 1548400 0 0 0 0 0 0 0 0 0 7837 2335 8150 39117 39047 39047 1 ESAQAIEDLAGFKDPAAGHTEESMTDDKTTK AASVTGSRRRPRAPRESAQAIEDLAGFKDP AGHTEESMTDDKTTKIPCKSSPELEDTATS R E S T K I 5 0 0 4 0 1 4 2 1 1 1 3 1 1 1 2 4 0 0 0 0 0 31 2 3292.5041 P46013 P46013 2792 2822 MKI67 Antigen KI-67 yes yes 4 0.020358 14.357 By MS/MS 2 0.8444 1.0127 9.7437 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8444 1.0127 9.7437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12502000 6007200 6494500 0 0 0 0 0 0 12502000 6007200 6494500 0 0 0 0 0 0 0 0 0 7838 2335 8151 39118;39119 39048;39049 39048 2 ESATADAGYAILEK NSFQPISSLRDDERRESATADAGYAILEKK RESATADAGYAILEKKGALAERQHTSMDLP R E S E K K 4 0 0 1 0 0 2 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 14 0 1437.6987 P98175 P98175 686 699 RBM10 RNA-binding protein 10 yes yes 2 1.2903E-05 88.187 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 2 1.1607 1.1191 25.921 8 Median NaN NaN NaN 0 0 Median 0.86594 0.75669 NaN 1 0 Median 1.2249 1.3217 13.569 2 0 Median 1.4482 1.3695 NaN 1 0 Median 0.83973 0.8713 29.982 2 0 Median 1.3094 1.1018 7.6206 2 0 Median 46167000 22031000 24136000 0 0 0 2444900 1163700 1281300 29189000 13509000 15680000 1088100 422950 665180 12014000 6371300 5642600 1431100 564140 866950 7839 2671 8152 39120;39121;39122;39123;39124;39125;39126;39127 39050;39051;39052;39053;39054;39055;39056 39051 7 ESAWTKPDGVK KTPDGKVYYYNARTRESAWTKPDGVKVIQQ ARTRESAWTKPDGVKVIQQSELTPMLAAQA R E S V K V 1 0 0 1 0 0 1 1 0 0 0 2 0 0 1 1 1 1 0 1 0 0 11 1 1216.6088 O14776;G3V220 O14776 156 166 TCERG1 Transcription elongation regulator 1 yes no 2;3 0.00088964 76.679 By MS/MS By MS/MS By matching 2 2 1 0.81286 0.80817 16.596 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69202 0.79181 22.761 2 0 Median 0.82824 0.78896 3.4022 2 0 Median NaN NaN NaN 0 0 Median 1.2053 1.0327 NaN 1 0 Median 9249900 5016800 4233100 0 0 0 0 0 0 4377700 2479700 1898000 3863500 2009200 1854300 0 0 0 1008600 527790 480850 7840 1494 8153 39128;39129;39130;39131;39132 39057;39058;39059;39060;39061;39062 39062 6 ESCLEAYTGIVQGLK DKSDYDMVDYLNELRESCLEAYTGIVQGLK ESCLEAYTGIVQGLKGDQENVHPDVMLVQP R E S L K G 1 0 0 0 1 1 2 2 0 1 2 1 0 0 0 1 1 0 1 1 0 0 15 0 1666.8236 Q14974;J3KTM9 Q14974 763 777 KPNB1 Importin subunit beta-1 yes no 2 1.5278E-06 94.616 By MS/MS By matching 1 1 1.2802 1.0899 32.183 2 Median NaN NaN NaN 0 0 Median 0.98834 0.86808 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6582 1.3684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4213500 2180900 2032600 0 0 0 3338600 1809300 1529300 0 0 0 874970 371640 503330 0 0 0 0 0 0 7841 2904 8154 39133;39134 39063;39064 39063 2 ESDAMFAAER YQIMKVEGHVFPEFKESDAMFAAERAPDWV FPEFKESDAMFAAERAPDWVDAEECHRCRV K E S E R A 3 1 0 1 0 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 10 0 1125.4761 O14964;I3L1P5 O14964 147 156 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 2 0.04531 29.473 By MS/MS 1 1.2738 1.1544 NaN 1 Median NaN NaN NaN 0 0 Median 1.2738 1.1544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 888520 361290 527230 0 0 0 888520 361290 527230 0 0 0 0 0 0 0 0 0 0 0 0 7842 1506 8155 39135 39065 39065 1 ESDLNGAQIK CKAEHDQLLLNYAKKESDLNGAQIKLREYE NYAKKESDLNGAQIKLREYEAALNSKDAAL K E S I K L 1 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1073.5353 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 125 134 LMNB1 Lamin-B1 yes no 2 0.00034691 84.568 By MS/MS By MS/MS By MS/MS 1 3 1 0.72469 0.69027 31.998 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0287 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6581 0.63846 11.034 2 0 Median NaN NaN NaN 0 0 Median 12358000 6691200 5666600 0 0 0 0 0 0 4331000 2045200 2285900 0 0 0 8026700 4646000 3380700 0 0 0 7843 2084 8156 39136;39137;39138;39139;39140 39066;39067;39068;39069;39070;39071 39070 6 ESDLPSAILQTSGVSEFTK GRDRKKDKQHLKRKKESDLPSAILQTSGVS PSAILQTSGVSEFTKKRSKLVLPAPQISDA K E S T K K 1 0 0 1 0 1 2 1 0 1 2 1 0 1 1 4 2 0 0 1 0 0 19 0 2008.0001 Q99459 Q99459 272 290 CDC5L Cell division cycle 5-like protein yes yes 2 6.8688E-10 94.728 By matching By MS/MS 1 2 0.77805 0.84937 17.313 3 Median 0.87274 0.87905 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68348 0.73796 19.886 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13311000 7152200 6159200 1447900 695190 752700 0 0 0 11864000 6457100 5406500 0 0 0 0 0 0 0 0 0 7844 3745 8157 39141;39142;39143 39072;39073 39073 2 ESDLSHVQNK EFNEEGALSVLQQFKESDLSHVQNKSAFLC LQQFKESDLSHVQNKSAFLCGVMKTYRQRE K E S N K S 0 0 1 1 0 1 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1155.552 O43390 O43390 85 94 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.037233 31.934 By MS/MS By matching By matching 1 1 1 1.0205 1.0087 6.8133 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86424 0.9188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0205 1.0491 NaN 1 0 Median 1.1492 1.0087 NaN 1 0 Median 2440700 1318400 1122300 0 0 0 0 0 0 1868700 1042700 826020 0 0 0 499030 239590 259440 72954 36131 36823 7845 1568 8158 39144;39145;39146 39074 39074 1 ESDVGFIPTSGLSGENLITR ITGKLGHFLKQAGFKESDVGFIPTSGLSGE FIPTSGLSGENLITRSQSSELTKWYKGLCL K E S T R S 0 1 1 1 0 0 2 3 0 2 2 0 0 1 1 3 2 0 0 1 0 0 20 0 2091.0484 B7Z524;H0YDX7;J3QT46;Q9Y450;H0YES5 B7Z524 272 291 HBS1L HBS1-like protein yes no 2;3 2.5755E-10 93.011 By MS/MS By matching By MS/MS By matching 3 1 3 1 0.83226 0.85316 18.618 8 Median 0.82783 0.83088 28.778 3 0 Median 0.87125 0.75069 NaN 1 0 Median 0.78867 0.87954 11.898 3 0 Median 0.99245 0.87604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14170000 7228400 6941200 8865200 4459600 4405500 743270 362090 381180 4424400 2349300 2075200 136780 57407 79370 0 0 0 0 0 0 7846 632 8159 39147;39148;39149;39150;39151;39152;39153;39154 39075;39076;39077;39078 39076 4 ESDVPLKTEEFEVTK EIEYAMAYSKAAFERESDVPLKTEEFEVTK ESDVPLKTEEFEVTKTAVAHRPGAFKAELS R E S T K T 0 0 0 1 0 0 4 0 0 0 1 2 0 1 1 1 2 0 0 2 0 0 15 1 1749.8673 Q969H8;M0QXF7;M0QYN0 Q969H8 131 145 MYDGF Myeloid-derived growth factor yes no 2;3 9.5797E-19 136.38 By MS/MS By MS/MS By MS/MS 3 2 2 0.97033 0.89984 11.997 6 Median 0.92428 0.91739 5.4762 3 2 Median 1.0034 0.8785 0.66139 2 0 Median 1.168 1.1784 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152330000 76431000 75898000 128270000 65075000 63200000 6783300 3045000 3738300 17271000 8310900 8959600 0 0 0 0 0 0 0 0 0 7847 3583 8160 39155;39156;39157;39158;39159;39160;39161 39079;39080;39081;39082;39083;39084;39085 39082 7 ESDYFTPQGEFR WMVRIAEGEHPKDIRESDYFTPQGEFRVDK DIRESDYFTPQGEFRVDKAGSPTLLNCLMY R E S F R V 0 1 0 1 0 1 2 1 0 0 0 0 0 2 1 1 1 0 1 0 0 0 12 0 1474.6365 Q8TCJ2 Q8TCJ2 692 703 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 4.1172E-06 126.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 1 1 0.98125 0.92647 15.692 12 Median 0.85847 0.82291 9.1356 3 1 Median 1.032 0.85348 0.72574 2 0 Median 0.9767 1.023 8.4536 3 0 Median 1.2798 1.0946 1.5499 2 0 Median 1.0745 1.0707 NaN 1 0 Median 0.79719 0.666 NaN 1 0 Median 84656000 41654000 43002000 22376000 11749000 10627000 12341000 6100300 6241000 42794000 20398000 22396000 1432800 581880 850910 5128200 2564100 2564100 583880 261370 322510 7848 3466 8161 39162;39163;39164;39165;39166;39167;39168;39169;39170;39171;39172;39173 39086;39087;39088;39089;39090;39091;39092;39093;39094;39095;39096;39097 39089 12 ESDYFTPQGEFRVDK WMVRIAEGEHPKDIRESDYFTPQGEFRVDK ESDYFTPQGEFRVDKAGSPTLLNCLMYKMS R E S D K A 0 1 0 2 0 1 2 1 0 0 0 1 0 2 1 1 1 0 1 1 0 0 15 1 1816.8268 Q8TCJ2 Q8TCJ2 692 706 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 3 0.0014712 35.891 By matching By MS/MS 1 1 0.98061 1.0705 0.61551 2 Median 1.0356 1.0659 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92849 1.0752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10594000 5238600 5355200 4662700 2389900 2272800 0 0 0 5931100 2848700 3082400 0 0 0 0 0 0 0 0 0 7849 3466 8162 39174;39175 39098 39098 1 ESEAVEWQQK LTARISQLEMARQKKESEAVEWQQKAQMVQ ARQKKESEAVEWQQKAQMVQEDLEKTRAEL K E S Q K A 1 0 0 0 0 2 3 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 10 0 1232.5673 P26038 P26038 439 448 MSN Moesin yes yes 2 2.8329E-11 180.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1.12 1.0377 6.0565 8 Median 1.1032 1.0071 1.8238 2 0 Median 1.2296 1.0559 10.787 2 0 Median 1.0783 1.0555 NaN 1 0 Median 1.1742 1.0057 8.3624 2 0 Median 1.0511 1.0869 NaN 1 1 Median NaN NaN NaN 0 0 Median 169950000 78539000 91412000 39687000 18872000 20815000 40944000 17972000 22972000 68381000 32276000 36105000 17508000 7689300 9819100 3429800 1729500 1700200 0 0 0 7850 2139 8163 39176;39177;39178;39179;39180;39181;39182;39183 39099;39100;39101;39102;39103;39104;39105;39106;39107;39108;39109;39110;39111 39111 13 ESEDFIVEQYK RYLLFARQFKPKISKESEDFIVEQYKHLRQ KISKESEDFIVEQYKHLRQRDGSGVTKSSW K E S Y K H 0 0 0 1 0 1 3 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 11 0 1385.6351 Q14566 Q14566 589 599 MCM6 DNA replication licensing factor MCM6 yes yes 2 5.001E-06 102.61 By MS/MS By MS/MS By matching 2 1 1 1.0048 0.92804 19.206 4 Median 1.157 1.1257 20.191 2 1 Median NaN NaN NaN 0 0 Median 0.78144 0.84881 NaN 1 0 Median 1.0156 0.88246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40029000 14994000 25035000 22022000 7505900 14516000 0 0 0 16656000 7013600 9642400 1351100 474440 876660 0 0 0 0 0 0 7851 2881 8164 39184;39185;39186;39187 39112;39113;39114 39114 2 ESEDSTDFNDK PSRRTLGSATALMIRESEDSTDFNDKILNE LMIRESEDSTDFNDKILNEPLKHSDFFNVK R E S D K I 0 0 1 3 0 0 2 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 11 0 1285.4946 Q9Y399 Q9Y399 51 61 MRPS2 28S ribosomal protein S2, mitochondrial no no 2 0.00029355 72.643 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1.2935 1.2434 27.522 6 Median 0.96584 0.93494 40.896 2 0 Median 1.2095 1.0298 NaN 1 0 Median 1.3263 1.2384 NaN 1 0 Median 1.5686 1.2876 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8514 1.5663 NaN 1 0 Median 6134100 3273100 2860900 3375800 1879500 1496300 1500500 788610 711880 688360 369250 319110 364820 142380 222440 0 0 0 204580 93427 111150 7852 4409 8165 39188;39189;39190;39191;39192;39193 39115;39116;39117 39117 3 ESEFDDEPK EEMDDQDKDKAKGRKESEFDDEPKFMSKVI KAKGRKESEFDDEPKFMSKVIGANKNQEEE K E S P K F 0 0 0 2 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 0 1094.4404 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 443 451 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.020328 39.022 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1.0286 1.0201 9.6392 5 Median 0.85876 0.86067 NaN 1 0 Median 1.1593 1.0201 NaN 1 0 Median 1.0286 1.0956 NaN 1 0 Median 1.2839 1.082 NaN 1 0 Median 0.96528 0.99815 NaN 1 0 Median NaN NaN NaN 0 0 Median 9932600 4837700 5094900 1771200 891180 880030 1864000 904210 959780 1032400 517630 514780 633270 293980 339290 4631700 2230700 2401000 0 0 0 7853 439 8166 39194;39195;39196;39197;39198 39118;39119;39120 39120 3 ESEHTGPGWESAR QGIGHLLRGISISSKESEHTGPGWESARQM SKESEHTGPGWESARQMQQKMKETLQNVRT K E S A R Q 1 1 0 0 0 0 3 2 1 0 0 0 0 0 1 2 1 1 0 0 0 0 13 0 1441.6222 Q8N0X7 Q8N0X7 63 75 SPG20 Spartin yes yes 3 0.031961 19.394 By MS/MS By matching 1 1 0.9322 0.89045 29.273 2 Median 0.72433 0.72396 NaN 1 0 Median 1.1997 1.0952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199800 592860 606970 541370 258880 282490 658460 333980 324480 0 0 0 0 0 0 0 0 0 0 0 0 7854 3352 8167 39199;39200 39121 39121 1 ESEITDEDIDGILER LQMIRHGATHVFASKESEITDEDIDGILER ESEITDEDIDGILERGAKKTAEMNEKLSKM K E S E R G 0 1 0 3 0 0 4 1 0 3 1 0 0 0 0 1 1 0 0 0 0 0 15 0 1732.8003 O60264 O60264 666 680 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 2.2526E-09 119.76 By MS/MS By MS/MS By matching 2 3 2 0.9385 0.97513 8.5445 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94825 1.0415 1.2859 2 0 Median NaN NaN NaN 0 0 Median 0.84328 0.88113 8.3465 3 0 Median 1.1644 0.95808 2.8886 2 0 Median 26929000 13394000 13535000 0 0 0 0 0 0 12385000 5974400 6410900 0 0 0 13575000 7014400 6560900 968070 405390 562680 7855 1608 8168 39201;39202;39203;39204;39205;39206;39207 39122;39123;39124;39125;39126;39127 39122 6 ESEKPLQTGLPTGLTENQSGGPLGVDSPSAELDKK EGAEPFPVGCSQLLKESEKPLQTGLPTGLT GPLGVDSPSAELDKKANLLKCEYCGKYAPA K E S K K A 1 0 1 2 0 2 4 5 0 0 5 3 0 0 4 4 3 0 0 1 0 0 35 2 3578.7952 P78364;J3KQH6 P78364 760 794 PHC1 Polyhomeotic-like protein 1 yes no 4 0.0046418 23.891 By MS/MS 1 0.51708 0.62135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51708 0.62135 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4297500 3256600 1040900 0 0 0 0 0 0 4297500 3256600 1040900 0 0 0 0 0 0 0 0 0 7856 1318 8169 39208 39128 39128 1 ESEKQQDSQPEEVMDVLEMVENVK KQEMEVKMEEETEVRESEKQQDSQPEEVMD PEEVMDVLEMVENVKHVIADQEVMETNRVE R E S V K H 0 0 1 2 0 3 6 0 0 0 1 2 2 0 1 2 0 0 0 4 0 0 24 1 2819.2841 Q9H307 Q9H307 374 397 PNN Pinin yes yes 3 0.035567 12.314 By MS/MS By matching 1 1 0.85421 0.86545 1.4647 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78039 0.87446 NaN 1 0 Median 0.93501 0.85653 NaN 1 0 Median 4710800 2534600 2176200 0 0 0 0 0 0 0 0 0 0 0 0 4607600 2487000 2120600 103220 47557 55662 7857 3950 8170 39209;39210 39129 39129 1 ESELGDRPLQVGER GVGHRTVYLFDRREKESELGDRPLQVGERS KESELGDRPLQVGERSDYAGFRACVCQTLG K E S E R S 0 2 0 1 0 1 3 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 14 1 1583.7903 A6NHR9 A6NHR9 37 50 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 6.1825E-05 78.373 By matching By MS/MS 1 1 0.88008 0.94129 9.0367 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69902 0.88302 NaN 1 0 Median 1.108 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16168000 9072200 7095900 0 0 0 0 0 0 12481000 7570500 4910700 3687000 1501700 2185300 0 0 0 0 0 0 7858 518 8171 39211;39212 39130;39131 39130 2 ESELKPLVGESR LSSAAPFSEPSSSEKESELKPLVGESRSIA SEKESELKPLVGESRSIAVKAVSSNISQKD K E S S R S 0 1 0 0 0 0 3 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 12 1 1342.7092 Q709C8;A0A3B3IT88 Q709C8 1569 1580 VPS13C Vacuolar protein sorting-associated protein 13C yes no 3 0.0396 19.74 By MS/MS By matching 1 1 0.60067 0.58667 30.432 2 Median 0.4643 0.47309 NaN 1 0 Median 0.7771 0.72753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5751000 3238800 2512200 1694700 1037200 657420 4056400 2201600 1854800 0 0 0 0 0 0 0 0 0 0 0 0 7859 3205 8172 39213;39214 39132 39132 1 ESELLATR SQETFKQLQSDFYGRESELLATRQDLKSVE QSDFYGRESELLATRQDLKSVEEKLSLAQE R E S T R Q 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 917.48181 Q15075 Q15075 1039 1046 EEA1 Early endosome antigen 1 yes yes 2 0.041504 36.557 By MS/MS 1 1.0249 0.86502 NaN 1 Median NaN NaN NaN 0 0 Median 1.0249 0.86502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2336100 982380 1353700 0 0 0 2336100 982380 1353700 0 0 0 0 0 0 0 0 0 0 0 0 7860 2926 8173 39215 39133 39133 1 ESELTDEDITTILER LQMIRHGATHVFASKESELTDEDITTILER ESELTDEDITTILERGEKKTAEMNERLQKM K E S E R G 0 1 0 2 0 0 4 0 0 2 2 0 0 0 0 1 3 0 0 0 0 0 15 0 1762.8473 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 669 683 SMARCA1 Probable global transcription activator SNF2L1 no no 2 6.5798E-08 102.4 By MS/MS By MS/MS 1 1 1.7305 1.8642 5.2326 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7588 1.9345 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7026 1.7965 NaN 1 1 Median NaN NaN NaN 0 0 Median 9825400 3716700 6108700 0 0 0 0 0 0 5976500 2257800 3718700 0 0 0 3848800 1458800 2390000 0 0 0 7861 167;643 8174 39216;39217 39134;39135 39134 2 ESENLASGDQPR VVDLSEQEEEKVELKESENLASGDQPRTAA ELKESENLASGDQPRTAAVGEICEEGLHVL K E S P R T 1 1 1 1 0 1 2 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 12 0 1301.5848 Q9NXH9;K7EMZ2;K7EQQ8 Q9NXH9 131 142 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase yes no 2 0.05125 43.512 By MS/MS 1 0.98833 0.8601 NaN 1 Median NaN NaN NaN 0 0 Median 0.98833 0.8601 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 895130 380580 514550 0 0 0 895130 380580 514550 0 0 0 0 0 0 0 0 0 0 0 0 7862 4166 8175 39218 39136 39136 1 ESEPQAAAEPAEAK KKAEGAATEEEGTPKESEPQAAAEPAEAKE KESEPQAAAEPAEAKEGKEKPDQDAEGKAE K E S A K E 5 0 0 0 0 1 4 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 14 0 1426.6576 P80723 P80723 39 52 BASP1 Brain acid soluble protein 1 yes yes 2 0.00098277 53.237 By matching By matching By MS/MS 1 1 1 0.52464 0.52461 49.446 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52464 0.52461 NaN 1 0 Median 0.91609 0.80606 NaN 1 0 Median 0.31533 0.30066 NaN 1 0 Median NaN NaN NaN 0 0 Median 4465400 3592100 873280 0 0 0 0 0 0 441660 277920 163740 204570 95628 108950 3819200 3218600 600590 0 0 0 7863 2649 8176 39219;39220;39221 39137;39138 39137 2 ESESAPGDFSLSVK EMLSKQRHDGAFLIRESESAPGDFSLSVKF RESESAPGDFSLSVKFGNDVQHFKVLRDGA R E S V K F 1 0 0 1 0 0 2 1 0 0 1 1 0 1 1 4 0 0 0 1 0 0 14 0 1451.678 P62993;J3KT38 P62993 87 100 GRB2 Growth factor receptor-bound protein 2 yes no 2 0.00035014 72.652 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.9358 0.84877 15.118 6 Median 0.92291 0.85384 NaN 1 0 Median 1.0039 0.84373 NaN 1 0 Median 0.91564 0.85856 NaN 1 0 Median 0.94886 0.78592 NaN 1 0 Median 1.0232 1.0513 NaN 1 0 Median 0.81857 0.65882 NaN 1 0 Median 65125000 33842000 31283000 31403000 16199000 15204000 5162100 2435200 2726900 24276000 13098000 11178000 2908400 1415500 1492900 1201800 633230 568580 174600 61497 113100 7864 2613 8177 39222;39223;39224;39225;39226;39227 39139;39140;39141;39142;39143;39144;39145;39146 39139 8 ESESVDKVMDQK PITGRSRGFGFVLFKESESVDKVMDQKEHK LFKESESVDKVMDQKEHKLNGKVIDPKRAK K E S Q K E 0 0 0 2 0 1 2 0 0 0 0 2 1 0 0 2 0 0 0 2 0 0 12 1 1393.6395 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RBQ9 Q14103 147 158 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 2;3 2.3431E-05 101.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 6 4 4 3 1.0122 1.0412 18.981 21 Median 1.073 1.0048 27.349 3 0 Median 1.858 1.6906 NaN 1 0 Median 0.95537 1.0076 9.1564 6 0 Median 1.2205 1.1402 6.7665 4 0 Median 0.93123 0.98816 8.9904 4 0 Median 1.3414 1.1955 30.799 3 0 Median 94017000 45666000 48351000 5161500 2336700 2824800 618100 192530 425570 17704000 8936900 8767000 21705000 9495500 12209000 43980000 22907000 21073000 4848300 1797400 3050900 7865 2854;816 8178 39228;39229;39230;39231;39232;39233;39234;39235;39236;39237;39238;39239;39240;39241;39242;39243;39244;39245;39246;39247;39248 39147;39148;39149;39150;39151;39152;39153;39154;39155;39156;39157;39158;39159;39160;39161;39162;39163;39164;39165;39166;39167;39168;39169 39154 23 ESESVDKVMDQKEHK PITGRSRGFGFVLFKESESVDKVMDQKEHK ESESVDKVMDQKEHKLNGKVIDPKRAKAMK K E S H K L 0 0 0 2 0 1 3 0 1 0 0 3 1 0 0 2 0 0 0 2 0 0 15 2 1787.836 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RBQ9 Q14103 147 161 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 3;4 0.017298 22.475 By matching By matching By MS/MS 2 1 3 0.90414 0.95555 26.149 6 Median 1.0687 1.0958 1.2478 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3485 1.2693 NaN 1 0 Median 0.7236 0.79172 15.463 3 0 Median NaN NaN NaN 0 0 Median 33587000 19692000 13895000 1169400 520510 648840 0 0 0 0 0 0 596830 288230 308600 31821000 18883000 12938000 0 0 0 7866 2854;816 8179 39249;39250;39251;39252;39253;39254 39170;39171;39172 39171 3 ESEVLEGAER QSTLIRSLQSQLQNKESEVLEGAERVRHIS QLQNKESEVLEGAERVRHISSKVEELSQAL K E S E R V 1 1 0 0 0 0 4 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1117.5251 Q14789;E7EU81;H0Y867 Q14789 844 853 GOLGB1 Golgin subfamily B member 1 yes no 2 8.1206E-05 133.13 By MS/MS By MS/MS 2 1 1.0435 0.83516 16.548 3 Median 0.89661 0.90144 22.557 2 0 Median 1.0435 0.83516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25881000 13249000 12632000 5537900 2689900 2848000 20343000 10560000 9783800 0 0 0 0 0 0 0 0 0 0 0 0 7867 2900 8180 39255;39256;39257 39173;39174;39175;39176 39176 4 ESFAEMNR LSMDEKVELYRIKFKESFAEMNRGSNEWKT LYRIKFKESFAEMNRGSNEWKTVVGGAMFF K E S N R G 1 1 1 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 8 0 982.41783 P13073;H3BPG0;H3BN72;H3BNV9 P13073 88 95 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.0032009 100.45 By MS/MS By MS/MS By matching 1 1 1 0.96008 0.97174 22.275 3 Median 0.78793 0.76861 NaN 1 0 Median 1.4132 1.1997 NaN 1 0 Median 0.96008 0.97174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17742000 8553400 9188200 8491000 4555600 3935400 6871600 2664200 4207400 2379000 1333600 1045300 0 0 0 0 0 0 0 0 0 7868 1988 8181 39258;39259;39260 39177;39178;39179 39177 3 ESFDGSVR FVKGLSEDTTEETLKESFDGSVRARIVTDR TTEETLKESFDGSVRARIVTDRETGSSKGF K E S V R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 0 8 0 895.40356 P19338;H7BY16 P19338 590 597 NCL Nucleolin yes no 2 0.0022957 111.01 By MS/MS By MS/MS 4 3 1.1628 1.0034 25.916 6 Median NaN NaN NaN 0 0 Median 1.1865 1.0255 14.161 3 1 Median NaN NaN NaN 0 0 Median 1.1395 0.98174 37.105 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21746000 9482600 12263000 0 0 0 18652000 8215600 10437000 0 0 0 3093200 1267000 1826200 0 0 0 0 0 0 7869 2063 8182 39261;39262;39263;39264;39265;39266;39267 39180;39181;39182;39183;39184;39185;39186;39187;39188 39183 9 ESFESQFLADTER EDDAFAKGPTLTVYKESFESQFLADTERFY YKESFESQFLADTERFYTRESTEFLQQNPV K E S E R F 1 1 0 1 0 1 3 0 0 0 1 0 0 2 0 2 1 0 0 0 0 0 13 0 1557.6947 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UJR3;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 206 218 CUL1 Cullin-1 yes no 2 2.3822E-06 120.09 By MS/MS By matching 1 1 1.0739 1.0272 19.647 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1114 1.1802 NaN 1 0 Median 1.0376 0.89394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11833000 7373000 4459800 0 0 0 0 0 0 10303000 6510400 3792100 1530400 862650 667700 0 0 0 0 0 0 7870 256 8183 39268;39269 39189 39189 1 ESFNPESYELDK ______________________________ STRESFNPESYELDKSFRLTRFTELKGTGC R E S D K S 0 0 1 1 0 0 3 0 0 0 1 1 0 1 1 2 0 0 1 0 0 0 12 0 1456.6358 P49903;Q5T5U6 P49903 5 16 SEPHS1 Selenide, water dikinase 1 yes no 2 0.00014004 88.681 By MS/MS 1 0.76004 0.78483 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76004 0.78483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20549000 10774000 9775300 0 0 0 0 0 0 20549000 10774000 9775300 0 0 0 0 0 0 0 0 0 7871 2404 8184 39270 39190;39191 39190 2 ESFREQDIYLPIANVAR TEDSMNDHEDTNGSKESFREQDIYLPIANV FREQDIYLPIANVARIMKNAIPQTGKIAKD K E S A R I 2 2 1 1 0 1 2 0 0 2 1 0 0 1 1 1 0 0 1 1 0 0 17 1 2020.0378 F8VSL3;P25208 F8VSL3 51 67 NFYB Nuclear transcription factor Y subunit beta yes no 3 0.0080853 24.538 By MS/MS By matching 1 1 0.77505 0.76238 39.134 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55755 0.57809 NaN 1 0 Median 1.0774 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3200300 1788100 1412200 0 0 0 0 0 0 2752500 1579100 1173500 447800 209060 238750 0 0 0 0 0 0 7872 1064 8185 39271;39272 39192 39192 1 ESFSLVQVQPGVDIIR MATHTLITGLEEYVRESFSLVQVQPGVDII SFSLVQVQPGVDIIRTNLEFLQEQFNSIAA R E S I R T 0 1 0 1 0 2 1 1 0 2 1 0 0 1 1 2 0 0 0 3 0 0 16 0 1785.9625 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47 P46379 821 836 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 8.5741E-09 104.79 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 0.95494 0.83463 78.173 7 Median 0.38652 0.39029 124.45 2 1 Median 0.93176 0.7923 3.9105 2 0 Median 1.1742 1.2668 NaN 1 0 Median 0.95461 0.83463 NaN 1 0 Median 1.9823 2.0361 NaN 1 1 Median NaN NaN NaN 0 0 Median 18591000 10070000 8521000 9284100 5631300 3652800 7265000 3676100 3588900 1049100 401510 647570 280920 142360 138560 712200 218950 493250 0 0 0 7873 8 8186 39273;39274;39275;39276;39277;39278;39279 39193;39194;39195;39196;39197 39193 5 ESGELYYSIEK EDEYFSAGVVKGHRKESGELYYSIEKEGQR GHRKESGELYYSIEKEGQRKWYKRMAVILS K E S E K E 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 2 0 0 2 0 0 0 11 0 1316.6136 A6NNK5;Q12888;H7BZY0 A6NNK5 1519 1529 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.047302 45.137 By MS/MS 1 1.8311 1.534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8311 1.534 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1040000 359940 680060 0 0 0 0 0 0 0 0 0 1040000 359940 680060 0 0 0 0 0 0 7874 530 8187 39280 39198 39198 1 ESGMNLNPEVEGTLIR ASFPECTAAAIKAIRESGMNLNPEVEGTLI SGMNLNPEVEGTLIRVPIPQVTREHREMLV R E S I R V 0 1 2 0 0 0 3 2 0 1 2 0 1 0 1 1 1 0 0 1 0 0 16 0 1757.8618 Q96E11 Q96E11 164 179 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 0.0001169 76.655 By MS/MS By MS/MS By matching By matching 1 2 1 2 0.85351 0.81991 18.542 6 Median 0.97846 0.92511 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85351 0.81991 4.8416 2 0 Median NaN NaN NaN 0 0 Median 0.75671 0.73441 NaN 1 0 Median 1.0512 0.87074 37.213 2 0 Median 42150000 22102000 20048000 6632800 3361700 3271100 0 0 0 34046000 18011000 16035000 0 0 0 761910 416520 345390 708860 312890 395970 7875 3631 8188;8189 39281;39282;39283;39284;39285;39286 39199;39200;39201;39202 39201 1793 4 ESGNDTIDEEELILPNR TVVGLDDIMDEGVVKESGNDTIDEEELILP GNDTIDEEELILPNRNLRDKVEENSVRSPR K E S N R N 0 1 2 2 0 0 4 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 17 0 1942.912 Q92576;D6R9X2;E9PE34;A0A1B0GX99;D6RBF0 Q92576 96 112 PHF3 PHD finger protein 3 yes no 2 2.7598E-05 56.225 By MS/MS 1 0.9851 1.0927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9851 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3229400 1577900 1651500 0 0 0 0 0 0 3229400 1577900 1651500 0 0 0 0 0 0 0 0 0 7876 3539 8190 39287 39203;39204 39204 2 ESGPSGIETELR GLVNNKYDTALNLLKESGPSGIETELRSLS LLKESGPSGIETELRSLSPDCGGSIEVMQS K E S L R S 0 1 0 0 0 0 3 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 12 0 1273.615 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 793 804 WDR36 WD repeat-containing protein 36 yes no 2 0.00098074 87.298 By MS/MS By MS/MS By matching 2 1 1 0.88824 0.89593 46.035 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81883 0.89593 4.0696 2 1 Median 0.90353 0.77853 NaN 1 0 Median 1.8143 2.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median 28000000 12971000 15029000 0 0 0 0 0 0 20867000 10418000 10449000 2102800 1191000 911900 5029500 1361700 3667800 0 0 0 7877 188 8191 39288;39289;39290;39291 39205;39206 39205 2 ESGVDIAAGNMLVK RAIAFLQQPRSLTYKESGVDIAAGNMLVKK KESGVDIAAGNMLVKKIQPLAKATSRSGCK K E S V K K 2 0 1 1 0 0 1 2 0 1 1 1 1 0 0 1 0 0 0 2 0 0 14 0 1402.7126 P22102 P22102 439 452 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.0010223 51.762 By MS/MS 1 1.0973 1.0616 NaN 1 Median 1.0973 1.0616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11714000 5555400 6158700 11714000 5555400 6158700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7878 2098 8192 39292 39207;39208 39207 2 ESGVGQTDWSGVEAGEFLK DLAEVGEGGGHSQARESGVGQTDWSGVEAG GQTDWSGVEAGEFLKSRERGVGQADWTPDL R E S L K S 1 0 0 1 0 1 3 4 0 0 1 1 0 1 0 2 1 1 0 2 0 0 19 0 1994.9222 Q9C0C2 Q9C0C2 1252 1270 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 1.2865E-06 59.185 By MS/MS By matching 1 1 1.0105 0.92716 13.988 2 Median 1.0648 1.0236 NaN 1 0 Median 0.959 0.83985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4873100 1946200 2926900 4591000 1801100 2789900 282120 145130 136990 0 0 0 0 0 0 0 0 0 0 0 0 7879 3903 8193 39293;39294 39209 39209 1 ESGYNMIHFTPLQTLGLSR LGPFDEWESRLRVAKESGYNMIHFTPLQTL NMIHFTPLQTLGLSRSCYSLANQLELNPDF K E S S R S 0 1 1 0 0 1 1 2 1 1 3 0 1 1 1 2 2 0 1 0 0 0 19 0 2163.0783 P35573 P35573 152 170 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 8.8912E-06 48.848 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.9474 0.93917 16.13 4 Median 1.0575 1.0083 NaN 1 0 Median 1.289 1.0788 NaN 1 0 Median 0.81861 0.87477 NaN 1 0 Median 0.84875 0.74993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7481300 3498400 3982900 5200100 2483000 2717100 1663400 724730 938660 520320 246600 273730 97551 44094 53457 0 0 0 0 0 0 7880 2243 8194 39295;39296;39297;39298 39210;39211;39212;39213 39211 4 ESHATLVFHNLLGEIDQQYSR APWIESQDWAYAASKESHATLVFHNLLGEI VFHNLLGEIDQQYSRFLQESNVLYQHNLRR K E S S R F 1 1 1 1 0 2 2 1 2 1 3 0 0 1 0 2 1 0 1 1 0 0 21 0 2456.2084 P40763;K7EP08 P40763 50 70 STAT3 Signal transducer and activator of transcription 3 yes no 3 0.00032693 28.65 By MS/MS By MS/MS 1 1 1.2349 1.1389 24.75 2 Median 0.97736 0.95602 NaN 1 0 Median 1.5602 1.3567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4776800 2331100 2445700 2758300 1448200 1310100 2018600 882940 1135600 0 0 0 0 0 0 0 0 0 0 0 0 7881 2289 8195 39299;39300 39214;39215;39216 39215 3 ESHLLNDEDLTQAK NIFNKSKCQNCFKPRESHLLNDEDLTQAKP RESHLLNDEDLTQAKPIYGGWLLLAPDGTD R E S A K P 1 0 1 2 0 1 2 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1611.774 A0A494BZV2;Q6WCQ1;J3KSK7 A0A494BZV2 30 43 MPRIP Myosin phosphatase Rho-interacting protein yes no 3 2.4272E-06 91.307 By MS/MS By MS/MS By matching 1 1 1 0.99687 0.86485 27.723 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55328 0.59764 NaN 1 0 Median 1.1989 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99687 0.86485 NaN 1 0 Median 10095000 5792800 4302600 0 0 0 0 0 0 5789000 3762500 2026500 3210600 1553000 1657600 0 0 0 1095800 477250 618580 7882 453 8196 39301;39302;39303 39217;39218;39219;39220 39217 4 ESHRLPVDIAYK LLEAQIATGGIIDPKESHRLPVDIAYKRGY DPKESHRLPVDIAYKRGYFNEELSEILSDP K E S Y K R 1 1 0 1 0 0 1 0 1 1 1 1 0 0 1 1 0 0 1 1 0 0 12 1 1426.7569 P15924 P15924 2382 2393 DSP Desmoplakin yes yes 3 0.015792 41.401 By MS/MS 1 0.39745 0.47525 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39745 0.47525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3668400 2774500 893990 0 0 0 0 0 0 3668400 2774500 893990 0 0 0 0 0 0 0 0 0 7883 2021 8197 39304 39221 39221 1 ESHTAVVYTEK AWDIPITYGVLPPPRESHTAVVYTEKDNKK PPPRESHTAVVYTEKDNKKSKLVIYGGMSG R E S E K D 1 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 2 0 1 2 0 0 11 0 1262.6143 A6NEM2;P51610 A6NEM2 201 211 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2;3 0.00094301 61.78 By MS/MS By MS/MS By MS/MS 2 2 3 0.95069 0.89814 13.728 7 Median NaN NaN NaN 0 0 Median 0.85948 0.73664 1.2936 2 0 Median 0.89361 0.9566 9.1043 2 0 Median 1.0648 0.96224 5.9993 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4559600 2136700 2422900 0 0 0 1983400 988530 994890 1106200 507350 598890 1469900 640820 829100 0 0 0 0 0 0 7884 509;2438 8198 39305;39306;39307;39308;39309;39310;39311 39222;39223;39224;39225;39226 39223 5 ESIAEHKPHIDK HEQLRQQQEEMRQLRESIAEHKPHIDKLLK QLRESIAEHKPHIDKLLKIGPQLKELNPEE R E S D K L 1 0 0 1 0 0 2 0 2 2 0 2 0 0 1 1 0 0 0 0 0 0 12 1 1402.7205 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5932 5943 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.0053514 34.264 By matching By MS/MS By matching By matching 2 2 1 1 0.93255 0.96833 15.41 6 Median 0.83582 0.90207 3.0243 2 0 Median 1.1699 1.132 22.201 2 0 Median 0.85284 0.96913 NaN 1 0 Median 1.1309 1.149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091200 1479000 1612200 763010 378050 384960 1938400 908130 1030200 234280 118150 116130 155520 74668 80853 0 0 0 0 0 0 7885 1220 8199 39312;39313;39314;39315;39316;39317 39227 39227 1 ESIEIINK IRFAPPLVIKEDELRESIEIINKTILSF__ IKEDELRESIEIINKTILSF__________ R E S N K T 0 0 1 0 0 0 2 0 0 3 0 1 0 0 0 1 0 0 0 0 0 0 8 0 944.51786 P04181 P04181 427 434 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.0051787 77.282 By MS/MS By MS/MS 1 1 1.2473 1.112 0.60896 2 Median 1.1965 1.1168 NaN 1 1 Median 1.3003 1.1072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48260000 20716000 27544000 7863300 3378700 4484600 40397000 17337000 23059000 0 0 0 0 0 0 0 0 0 0 0 0 7886 1846 8200 39318;39319 39228;39229;39230 39230 3 ESIESEIR DLTEICQRACKLAIRESIESEIRRERERQT ACKLAIRESIESEIRRERERQTNPSAMEVE R E S I R R 0 1 0 0 0 0 3 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 8 0 961.47164 P55072 P55072 701 708 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0054215 85.212 By MS/MS By MS/MS 1 1 1.0442 0.95421 0.80869 2 Median 0.98247 0.94876 NaN 1 1 Median 1.1098 0.95968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23717000 11587000 12129000 3871000 2084700 1786400 19846000 9502700 10343000 0 0 0 0 0 0 0 0 0 0 0 0 7887 2494 8201 39320;39321 39231;39232;39233 39231 3 ESIESEIRR DLTEICQRACKLAIRESIESEIRRERERQT CKLAIRESIESEIRRERERQTNPSAMEVEE R E S R R E 0 2 0 0 0 0 3 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 9 1 1117.5728 P55072 P55072 701 709 VCP Transitional endoplasmic reticulum ATPase yes yes 2 1.3121E-10 176.09 By MS/MS By MS/MS By matching 2 1 1 1.2514 1.312 31.69 4 Median 1.0364 1.1062 30.753 2 0 Median 1.2654 1.2519 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1705 1.9233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49628000 22071000 27557000 26549000 12517000 14032000 21591000 9017500 12573000 0 0 0 1488600 536560 952080 0 0 0 0 0 0 7888 2494 8202 39322;39323;39324;39325 39234;39235;39236;39237;39238 39238 5 ESIGSELGNSFASNIR PETNFRDSSYPFANKESIGSELGNSFASNI SIGSELGNSFASNIRIKEEPLDDEYDKAMA K E S I R I 1 1 2 0 0 0 2 2 0 2 1 0 0 1 0 4 0 0 0 0 0 0 16 0 1679.8115 Q5VZL5 Q5VZL5 233 248 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 0.0015274 54.7 By MS/MS 1 0.80774 0.89055 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80774 0.89055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2722100 1454900 1267200 0 0 0 0 0 0 2722100 1454900 1267200 0 0 0 0 0 0 0 0 0 7889 3117 8203 39326 39239 39239 1 ESIGSLQNGTHTPSTAMETAIPFR YESFGLYAVVEFCQKESIGSLQNGTHTPST THTPSTAMETAIPFRSRFFNLKLKNQTSER K E S F R S 2 1 1 0 0 1 2 2 1 2 1 0 1 1 2 3 4 0 0 0 0 0 24 0 2544.2279 Q9NVV4;Q5T852;Q5T851 Q9NVV4 122 145 MTPAP Poly(A) RNA polymerase, mitochondrial yes no 3 0.0010833 26.21 By MS/MS By MS/MS By matching 1 2 1 0.68752 0.70232 41.225 4 Median 0.64388 0.64227 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50911 0.54865 47.563 2 0 Median 1.1934 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7729000 4604500 3124600 2764000 1717900 1046100 0 0 0 4773500 2804200 1969300 191610 82412 109200 0 0 0 0 0 0 7890 4141 8204 39327;39328;39329;39330 39240;39241 39240 2 ESISDVGFGMLK SHHHGVGKLRKQWLKESISDVGFGMLKSVK WLKESISDVGFGMLKSVKEYVDPNNIFGNR K E S L K S 0 0 0 1 0 0 1 2 0 1 1 1 1 1 0 2 0 0 0 1 0 0 12 0 1281.6275 O00116;B8ZZ81 O00116 629 640 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.018731 33.378 By MS/MS By MS/MS By matching 1 1 1 1.0972 1.0399 7.7795 3 Median 1.0838 1.0399 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0972 1.1651 NaN 1 0 Median 1.1704 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7260100 3248100 4011900 4410000 2243900 2166100 0 0 0 2472700 836700 1636100 377320 167500 209810 0 0 0 0 0 0 7891 1439 8205 39331;39332;39333 39242;39243 39243 2 ESISRPPPVDVR QEGDRDYRFPPIETRESISRPPPVDVRDVV ETRESISRPPPVDVRDVVGRPIDPREGPGR R E S V R D 0 2 0 1 0 0 1 0 0 1 0 0 0 0 3 2 0 0 0 2 0 0 12 1 1350.7256 A0A0A0MT33;Q9UPN6 A0A0A0MT33 1103 1114 SCAF8 Protein SCAF8 yes no 2;3 0.0015159 56.729 By matching By MS/MS 1 3 0.49761 0.56573 13.935 4 Median NaN NaN NaN 0 0 Median 0.79765 0.69177 NaN 1 0 Median 0.46877 0.56137 7.9365 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8200800 5632200 2568500 0 0 0 1319800 781830 537990 6880900 4850400 2030600 0 0 0 0 0 0 0 0 0 7892 186 8206 39334;39335;39336;39337 39244;39245 39244 2 ESIVDVEGVVR HASKQMVKFAANINKESIVDVEGVVRKVNQ NINKESIVDVEGVVRKVNQKIGSCTQQDVE K E S V R K 0 1 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1200.635 P14868;C9J7S3;H7C278;C9JLC1;C9JQM9 P14868 111 121 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0016971 80.239 By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 1.1251 1.0536 61.504 8 Median 1.1245 1.1119 4.6924 3 1 Median 1.2526 1.0662 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4945 1.3316 35.176 2 1 Median 0.39429 0.4252 97.077 2 0 Median NaN NaN NaN 0 0 Median 24017000 12460000 11557000 12832000 6383600 6448200 3931600 1779100 2152500 0 0 0 2306100 1026000 1280100 4948000 3271400 1676700 0 0 0 7893 2012 8207 39338;39339;39340;39341;39342;39343;39344;39345 39246;39247;39248 39248 3 ESKEEETSIDVAGKPNEVTK YRLLAKEQKANEQKKESKEEETSIDVAGKP ETSIDVAGKPNEVTKAAESPDQKDTDGGPK K E S T K A 1 0 1 1 0 0 5 1 0 1 0 3 0 0 1 2 2 0 0 2 0 0 20 2 2189.0699 P53985 P53985 460 479 SLC16A1 Monocarboxylate transporter 1 yes yes 3;4 6.0856E-19 127.9 By MS/MS By MS/MS By MS/MS 5 5 1 0.90395 1.0117 17.282 11 Median 0.85652 0.9897 17.829 5 0 Median 1.0542 1.0982 15.552 5 0 Median 0.92126 1.1438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130610000 62676000 67934000 41303000 19575000 21728000 86657000 41778000 44879000 2650300 1323800 1326500 0 0 0 0 0 0 0 0 0 7894 2476 8208 39346;39347;39348;39349;39350;39351;39352;39353;39354;39355;39356 39249;39250;39251;39252;39253;39254;39255;39256;39257;39258;39259;39260;39261;39262;39263;39264;39265;39266 39262 18 ESKEETPGTEWEK ADIIGYVASEEAFVKESKEETPGTEWEKVA VKESKEETPGTEWEKVAQLCDFNPKSSKQC K E S E K V 0 0 0 0 0 0 5 1 0 0 0 2 0 0 1 1 2 1 0 0 0 0 13 1 1548.6944 P09497;D6RJD1 P09497 182 194 CLTB Clathrin light chain B yes no 3 0.071537 12.146 By MS/MS By matching By matching 1 1 1 1.1855 1.0798 18.422 3 Median 1.1855 1.1485 NaN 1 0 Median 1.1987 1.0798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92599 0.81309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2985700 1431100 1554600 1602800 765530 837290 564180 279180 285010 0 0 0 818680 386410 432280 0 0 0 0 0 0 7895 1916 8209 39357;39358;39359 39267 39267 1 ESKKEDLVFIFWAPESAPLK KDCRYALYDATYETKESKKEDLVFIFWAPE DLVFIFWAPESAPLKSKMIYASSKDAIKKK K E S L K S 2 0 0 1 0 0 3 0 0 1 2 3 0 2 2 2 0 1 0 1 0 0 20 2 2333.2307 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q9Y281 P23528 93 112 CFL1;CFL2 Cofilin-1;Cofilin-2 no no 3 0.026887 14.614 By matching By matching By MS/MS 1 1 1 0.92401 0.89343 58.075 3 Median NaN NaN NaN 0 0 Median 0.92401 0.83379 NaN 1 0 Median 1.9824 2.3558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79053 0.89343 NaN 1 0 Median NaN NaN NaN 0 0 Median 2488900 1304000 1184900 0 0 0 534860 229470 305380 387010 172800 214210 0 0 0 1567100 901750 665330 0 0 0 7896 2118;4378 8210 39360;39361;39362 39268 39268 1 ESKVPADLLKR KGANRTETVTSFRKRESKVPADLLKRAFVR FRKRESKVPADLLKRAFVRMSTSPEAFLAL R E S K R A 1 1 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 0 11 2 1254.7296 P78527 P78527 3875 3885 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0033054 39.917 By MS/MS By MS/MS 1 1 0.75937 0.91255 24.72 2 Median 0.70407 0.7662 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81902 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4087400 2026900 2060500 1927500 905320 1022200 0 0 0 2159900 1121600 1038300 0 0 0 0 0 0 0 0 0 7897 2647 8211 39363;39364 39269;39270;39271 39270 2 ESLAEEHEGLVGEGQR MLVYGTRLVVLPFRRESLAEEHEGLVGEGQ SLAEEHEGLVGEGQRSSFLPSYIIDVRALD R E S Q R S 1 1 0 0 0 1 5 3 1 0 2 0 0 0 0 1 0 0 0 1 0 0 16 0 1738.8122 Q10570 Q10570 167 182 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2;3 3.0815E-10 154.28 By MS/MS By MS/MS By MS/MS 2 6 2 0.97798 0.93121 13.776 10 Median NaN NaN NaN 0 0 Median 1.0844 0.88615 14.321 2 1 Median 0.85442 0.91353 16.187 6 0 Median 1.1171 0.98049 7.2764 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 163330000 80090000 83245000 0 0 0 22325000 10550000 11775000 116780000 58877000 57908000 24225000 10663000 13562000 0 0 0 0 0 0 7898 2753 8212 39365;39366;39367;39368;39369;39370;39371;39372;39373;39374 39272;39273;39274;39275;39276;39277;39278;39279;39280;39281;39282;39283;39284;39285;39286 39281 15 ESLDDLTNLVVK AYYSSNLMAVCVLGRESLDDLTNLVVKLFS LGRESLDDLTNLVVKLFSEVENKNVPLPEF R E S V K L 0 0 1 2 0 0 1 0 0 0 3 1 0 0 0 1 1 0 0 2 0 0 12 0 1344.7137 P14735;A0A3B3ISG5 P14735 262 273 IDE Insulin-degrading enzyme yes no 2 0.00071769 90.906 By MS/MS By MS/MS 1 2 1.2223 1.0569 3.7334 3 Plateau 0.99165 0.98472 NaN 1 1 Median 1.2122 1.0492 1.0336 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9151600 3910000 5241700 2340200 980560 1359600 6811500 2929400 3882000 0 0 0 0 0 0 0 0 0 0 0 0 7899 423 8213 39375;39376;39377 39287;39288;39289 39288 3 ESLEALLQR VWLRAAYFEKNHGTRESLEALLQRAVAHCP KNHGTRESLEALLQRAVAHCPKAEVLWLMG R E S Q R A 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1057.5768 O94906 O94906 591 599 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.003417 65.252 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.133 1.0931 14.478 6 Median 0.89384 0.8643 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91576 0.97096 NaN 1 0 Median 1.3427 1.1458 9.6115 2 0 Median 1.133 1.1912 9.1939 2 0 Median NaN NaN NaN 0 0 Median 26001000 12844000 13157000 4506100 2375100 2130900 0 0 0 15155000 7612000 7543000 1869400 787820 1081600 4470800 2069500 2401400 0 0 0 7900 1735 8214 39378;39379;39380;39381;39382;39383 39290;39291;39292;39293;39294;39295 39291 6 ESLIDGIK DSVTKSKFDNLYGCRESLIDGIKRATDVMI DNLYGCRESLIDGIKRATDVMIAGKVAVVA R E S I K R 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 873.48075 P23526 P23526 197 204 AHCY Adenosylhomocysteinase yes yes 2 0.055228 50.127 By MS/MS 1 1.1663 1.0969 NaN 1 Median 1.1663 1.0969 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6000900 2656500 3344400 6000900 2656500 3344400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7901 2116 8215 39384 39296 39296 1 ESLIDGIKR DSVTKSKFDNLYGCRESLIDGIKRATDVMI NLYGCRESLIDGIKRATDVMIAGKVAVVAG R E S K R A 0 1 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 1 1029.5819 P23526 P23526 197 205 AHCY Adenosylhomocysteinase yes yes 2 0.0005978 130.27 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.4274 1.3053 14.008 7 Median 1.0498 1.0843 14.171 2 0 Median 1.5543 1.4566 6.3983 3 0 Plateau 1.4274 1.4434 NaN 1 0 Median 1.2711 1.2192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68439000 28257000 40182000 27737000 12817000 14920000 33157000 12437000 20720000 3062500 1284500 1777900 4482900 1718400 2764500 0 0 0 0 0 0 7902 2116 8216 39385;39386;39387;39388;39389;39390;39391 39297;39298;39299;39300 39298 4 ESLITLIEK YPPASQLRQEWENNRESLITLIEKVHIGVK EWENNRESLITLIEKVHIGVKGFVKDSITG R E S E K V 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 9 0 1044.6067 O75976 O75976 371 379 CPD Carboxypeptidase D yes yes 2 0.04318 32.841 By MS/MS By matching 1 2 0.97269 0.87324 26.178 3 Median 0.69199 0.65416 NaN 1 0 Median 1.1 0.98149 16.527 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7768300 3756900 4011400 2241300 1265400 975840 5527000 2491400 3035600 0 0 0 0 0 0 0 0 0 0 0 0 7903 1714 8217 39392;39393;39394 39301 39301 1 ESLKPAAKPLPSK PVVKQTKLKQRADSRESLKPAAKPLPSKSV SRESLKPAAKPLPSKSVRKESKEETPEVTK R E S S K S 2 0 0 0 0 0 1 0 0 0 2 3 0 0 3 2 0 0 0 0 0 0 13 2 1364.8028 P46821;D6RA32;D6RA40 P46821 543 555 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 0.037807 19.604 By matching By matching By MS/MS 1 1 1 0.73289 0.90994 11.672 3 Median 0.71675 0.84664 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73289 0.90994 NaN 1 0 Median 0.88291 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1705300 906000 799350 526180 261090 265080 0 0 0 732320 431470 300850 446850 213440 233410 0 0 0 0 0 0 7904 2347 8218 39395;39396;39397 39302 39302 1 ESLLAEQR KEMLKLSEVRLSQQRESLLAEQRGQNLLLT VRLSQQRESLLAEQRGQNLLLTNLQTIQGI R E S Q R G 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 944.49271 P12270 P12270 803 810 TPR Nucleoprotein TPR yes yes 2 0.012861 54.157 By MS/MS By MS/MS 1 1 1.0377 1.1348 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0377 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3280000 1421100 1859000 0 0 0 0 0 0 3280000 1421100 1859000 0 0 0 0 0 0 0 0 0 7905 1978 8219 39398;39399 39303;39304 39303 2 ESLLLQVR RICVQNSTFSATWNRESLLLQVRGSGGARL FSATWNRESLLLQVRGSGGARLSTKDPLPT R E S V R G 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 8 0 956.56548 Q9BZE1;S4R369 Q9BZE1 216 223 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.0063273 71.715 By MS/MS By MS/MS 1 1 0.98364 1.0203 12.894 2 Median 0.93915 0.93139 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0302 1.1177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12814000 5962500 6851600 6390000 3178800 3211200 0 0 0 6424000 2783700 3640400 0 0 0 0 0 0 0 0 0 7906 3897 8220 39400;39401 39305;39306 39306 2 ESLMSHAIELK CFVGQAGQKLMMSQRESLMSHAIELKSGSN MSQRESLMSHAIELKSGSNKNIHIALATLA R E S L K S 1 0 0 0 0 0 2 0 1 1 2 1 1 0 0 2 0 0 0 0 0 0 11 0 1256.6435 Q9Y263 Q9Y263 681 691 PLAA Phospholipase A-2-activating protein yes yes 3 0.0071095 32.859 By MS/MS 1 1.0249 1.0173 NaN 1 Median 1.0249 1.0173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3262000 1334200 1927800 3262000 1334200 1927800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7907 4374 8221 39402 39307 39307 1 ESLNVDVVK EVLNDPENMEKRRSRESLNVDVVKYESGPD EKRRSRESLNVDVVKYESGPDGGEEMRKMK R E S V K Y 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 3 0 0 9 0 1001.5393 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;H0YJU9;H0YJL0;H0YJT3;H0YG16;H0YGB8 G5E9S8 521 529 KLC1 Kinesin light chain 1 yes no 2 0.0074886 51.346 By MS/MS 1 1.1368 0.97509 NaN 1 Median NaN NaN NaN 0 0 Median 1.1368 0.97509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520700 1714100 1806600 0 0 0 3520700 1714100 1806600 0 0 0 0 0 0 0 0 0 0 0 0 7908 896 8222 39403 39308 39308 1 ESLPELSTAQQNK NLFAYGTYPDYIANKESLPELSTAQQNKLK NKESLPELSTAQQNKLKHLTIVSLASRMKC K E S N K L 1 0 1 0 0 2 2 0 0 0 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1443.7205 J3KQ34;Q9H9Q2;J3KQ41 J3KQ34 49 61 COPS7B COP9 signalosome complex subunit 7b yes no 2 0.0012134 72.321 By MS/MS 1 1.2445 1.1469 NaN 1 Median 1.2445 1.1469 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12203000 5226200 6977100 12203000 5226200 6977100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7909 1316 8223 39404 39309 39309 1 ESLQQMAEVTR VICENTCKEKGRKERESLQQMAEVTREGFR RKERESLQQMAEVTREGFRLKKILIEDWKK R E S T R E 1 1 0 0 0 2 2 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 11 0 1290.6238 K7ELL7;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 125 135 PRKCSH Glucosidase 2 subunit beta yes no 2 9.7104E-05 109.29 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 5 3 1 1 1 1.1015 0.98868 83.589 13 Median 1.0046 0.93632 27.083 3 0 Median 1.2353 1.0798 29.964 4 1 Median 0.91761 0.93117 163.66 3 2 Median 1.2641 1.0602 NaN 1 0 Median 1.1048 1.1711 NaN 1 0 Median 1.5299 1.3118 NaN 1 0 Median 230910000 114100000 116810000 146950000 73638000 73313000 49031000 23297000 25734000 31101000 15567000 15534000 728420 306610 421820 2176300 886920 1289400 918840 403950 514890 7910 1378 8224;8225 39405;39406;39407;39408;39409;39410;39411;39412;39413;39414;39415;39416;39417;39418 39310;39311;39312;39313;39314;39315;39316;39317;39318;39319;39320;39321 39321 449 12 ESLSEEEAQK QKTFEEKLTPLLSVRESLSEEEAQKMGRKD LLSVRESLSEEEAQKMGRKDPEQEVEKFVT R E S Q K M 1 0 0 0 0 1 4 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1148.5197 Q9BXP5;H7C3A1 Q9BXP5 678 687 SRRT Serrate RNA effector molecule homolog yes no 2 0.00039696 107.57 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 3 1 1 1.0782 1.0772 12.299 8 Median 0.93699 0.94209 NaN 1 0 Median 1.3987 1.2241 7.1387 2 1 Median 1.0189 1.085 5.8773 3 0 Median 1.0805 0.90375 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.168 0.97812 NaN 1 0 Median 15030000 6066300 8963500 1611300 706240 905020 8694800 3316000 5378700 3530900 1581500 1949400 866830 316840 549990 0 0 0 325940 145620 180320 7911 3879 8226 39419;39420;39421;39422;39423;39424;39425;39426 39322;39323;39324;39325;39326;39327 39323 6 ESLTTDLQTR NKPGSVKPTQTIAVKESLTTDLQTRKEKDT TIAVKESLTTDLQTRKEKDTPNENRQKLRI K E S T R K 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 3 0 0 0 0 0 10 0 1162.583 J3QQW9;Q15022 J3QQW9 381 390 SUZ12 Polycomb protein SUZ12 yes no 2 0.018351 53.775 By MS/MS 1 1.2236 1.0541 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2236 1.0541 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1483300 636930 846370 0 0 0 0 0 0 0 0 0 1483300 636930 846370 0 0 0 0 0 0 7912 1344 8227 39427 39328 39328 1 ESLVSLVQNSR ELHNVGRDHGTSDFRESLVSLVQNSRKLQN SDFRESLVSLVQNSRKLQNIRDNVEKESKR R E S S R K 0 1 1 0 0 1 1 0 0 0 2 0 0 0 0 3 0 0 0 2 0 0 11 0 1230.6568 Q9H081 Q9H081 176 186 MIS12 Protein MIS12 homolog yes yes 2 0.00018754 109.66 By MS/MS By MS/MS 1 1 1.0355 1.0387 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0355 1.0387 NaN 1 0 Median NaN NaN NaN 0 0 Median 7786300 4141600 3644800 0 0 0 0 0 0 0 0 0 0 0 0 7786300 4141600 3644800 0 0 0 7913 3920 8228 39428;39429 39329;39330;39331 39330 3 ESLVVNYEDLAAR NVFKERISDMCKENRESLVVNYEDLAAREH NRESLVVNYEDLAAREHVLAYFLPEAPAEL R E S A R E 2 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1477.7413 P49736;H0Y8E6 P49736 228 240 MCM2 DNA replication licensing factor MCM2 yes no 2 6.4671E-07 156.12 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 0.85287 0.81719 10.443 7 Median 0.85631 0.81983 4.2562 2 0 Median 1.0561 0.91894 13.297 2 0 Median 0.72956 0.78759 5.2182 2 0 Median 0.85287 0.7281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83286000 44587000 38700000 46611000 24601000 22010000 6348600 3132100 3216600 29400000 16375000 13025000 927490 478860 448630 0 0 0 0 0 0 7914 2393 8229 39430;39431;39432;39433;39434;39435;39436 39332;39333;39334;39335;39336;39337;39338;39339;39340 39334 9 ESMAGNKPANAVLHK AEVECLAESHQHLSKESMAGNKPANAVLHK ESMAGNKPANAVLHKVLKQLEELLSDMKAD K E S H K V 3 0 2 0 0 0 1 1 1 0 1 2 1 0 1 1 0 0 0 1 0 0 15 1 1565.7984 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y795 Q14839 1838 1852 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.035965 16.529 By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 0.89693 0.93895 7.3234 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82962 0.95077 3.6877 2 0 Median 0.97494 0.9529 0.16654 2 0 Median 0.74931 0.80425 NaN 1 0 Median 0.97381 0.869 NaN 1 0 Median 19147000 10664000 8483200 0 0 0 0 0 0 7490500 4137000 3353600 4876600 2400500 2476100 5667100 3537900 2129200 1113200 588910 524310 7915 246 8230 39437;39438;39439;39440;39441;39442 39341;39342;39343 39341 3 ESMATGSIPITVR MDQDKVAKMYSDLRKESMATGSIPITVRHI RKESMATGSIPITVRHIESMIRMAEAHARI K E S V R H 1 1 0 0 0 0 1 1 0 2 0 0 1 0 1 2 2 0 0 1 0 0 13 0 1360.7021 P49736;H0Y8E6 P49736 753 765 MCM2 DNA replication licensing factor MCM2 yes no 2 3.9548E-30 167.09 By MS/MS By MS/MS By MS/MS 3 1 3 0.75466 0.7916 20.283 7 Median 0.81133 0.78178 25.93 3 2 Median 0.95256 0.7916 NaN 1 0 Median 0.74973 0.79462 18.141 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153950000 86352000 67596000 74884000 40547000 34337000 19928000 9668400 10259000 59136000 36136000 23000000 0 0 0 0 0 0 0 0 0 7916 2393 8231;8232 39443;39444;39445;39446;39447;39448;39449 39344;39345;39346;39347;39348;39349;39350;39351;39352 39349 1103 9 ESMLVEWEQVK ESRKRTFGMAEEYHRESMLVEWEQVKQRIL EYHRESMLVEWEQVKQRILHTLLASGEDAL R E S V K Q 0 0 0 0 0 1 3 0 0 0 1 1 1 0 0 1 0 1 0 2 0 0 11 0 1376.6646 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BP95;H3BMX0;H3BNG7 Q8N1F7 131 141 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00013666 85.676 By MS/MS By MS/MS By matching 1 1 1 1.2185 1.1917 2.8852 3 Median 1.2185 1.1917 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0416 1.1337 NaN 1 0 Median 1.3738 1.1919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18399000 8531200 9868200 2552800 1000700 1552100 0 0 0 13811000 6641500 7169200 2035900 888970 1146900 0 0 0 0 0 0 7917 3356 8233 39450;39451;39452 39353;39354;39355 39354 3 ESMQMQVEAER LRYEIKDIHVPPRVKESMQMQVEAERRKRA PRVKESMQMQVEAERRKRATVLESEGTRES K E S E R R 1 1 0 0 0 2 3 0 0 0 0 0 2 0 0 1 0 0 0 1 0 0 11 0 1336.5751 Q9UJZ1;A0A087WYB4 Q9UJZ1 188 198 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.00011205 123.86 By MS/MS By MS/MS 2 2 1.2854 1.1968 8.8848 4 Median 1.1176 1.1248 0.26305 2 0 Median 1.5019 1.3057 3.806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25703000 10789000 14914000 11882000 5514600 6366900 13822000 5274700 8546900 0 0 0 0 0 0 0 0 0 0 0 0 7918 4304 8234;8235 39453;39454;39455;39456 39356;39357;39358;39359;39360;39361 39357 1921 6 ESMQMQVEAERR LRYEIKDIHVPPRVKESMQMQVEAERRKRA RVKESMQMQVEAERRKRATVLESEGTRESA K E S R R K 1 2 0 0 0 2 3 0 0 0 0 0 2 0 0 1 0 0 0 1 0 0 12 1 1492.6762 Q9UJZ1;A0A087WYB4 Q9UJZ1 188 199 STOML2 Stomatin-like protein 2, mitochondrial yes no 3 0.0085784 45.077 By MS/MS By MS/MS 1 1 1.5009 1.4878 30.061 2 Median 1.1433 1.2029 NaN 1 0 Median 1.9705 1.8402 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6252500 2365600 3886900 3377400 1401900 1975500 2875200 963680 1911500 0 0 0 0 0 0 0 0 0 0 0 0 7919 4304 8236 39457;39458 39362;39363 39363 2 ESNGPVKVWGSIK KGDGPVQGIINFEQKESNGPVKVWGSIKGL QKESNGPVKVWGSIKGLTEGLHGFHVHEFG K E S I K G 0 0 1 0 0 0 1 2 0 1 0 2 0 0 1 2 0 1 0 2 0 0 13 1 1399.746 P00441 P00441 25 37 SOD1 Superoxide dismutase [Cu-Zn] yes yes 2 3.935E-06 101.93 By MS/MS By matching 1 1 1.134 1.0656 8.3742 2 Median 1.0056 1.0043 NaN 1 0 Median 1.2788 1.1306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11813000 5904400 5908400 10447000 5274000 5173400 1365300 630380 734970 0 0 0 0 0 0 0 0 0 0 0 0 7920 1820 8237 39459;39460 39364 39364 1 ESNTVFSFLGLKPR GDRYCGDYDSFFESKESNTVFSFLGLKPRL KESNTVFSFLGLKPRLASKAEP________ K E S P R L 0 1 1 0 0 0 1 1 0 0 2 1 0 2 1 2 1 0 0 1 0 0 14 1 1593.8515 Q9UJC5 Q9UJC5 87 100 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 2;3 0.00025489 77.379 By matching By MS/MS By matching 1 2 1 0.92253 0.88409 41.768 4 Median NaN NaN NaN 0 0 Median 1.1277 0.99566 NaN 1 0 Median 0.75179 0.782 0.54416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.368 1.8933 NaN 1 0 Median 14315000 7870400 6444100 0 0 0 188160 83798 104360 11283000 6590500 4692100 0 0 0 0 0 0 2843800 1196100 1647600 7921 4296 8238 39461;39462;39463;39464 39365;39366;39367;39368 39366 4 ESNVQEVR QVKSLCEKAKEILTKESNVQEVRCPVTVCG AKEILTKESNVQEVRCPVTVCGDVHGQFHD K E S V R C 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 8 0 959.46722 P67775;P62714;E7ESG8 P67775 42 49 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase yes no 2 0.0074447 67.032 By MS/MS By matching 1 1 1.1533 1.0896 1.4086 2 Median 1.1336 1.1005 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1734 1.0788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2216900 1043600 1173300 1803100 862870 940210 0 0 0 413820 180760 233070 0 0 0 0 0 0 0 0 0 7922 2594 8239 39465;39466 39369;39370 39369 2 ESPFSTSASPLLSGSQHFDVPPR ICLEYWNHLAAELYRESPFSTSASPLLSGS SPLLSGSQHFDVPPRRQLYLPMLFKVRLLM R E S P R R 1 1 0 1 0 1 1 1 1 0 2 0 0 2 4 6 1 0 0 1 0 0 23 0 2442.1816 O14980 O14980 383 405 XPO1 Exportin-1 yes yes 3 0.0097933 19.378 By MS/MS By matching By matching By matching 1 1 1 1 0.65474 0.56891 29.114 4 Median 0.55303 0.53472 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92746 0.99452 NaN 1 0 Median 0.64381 0.57331 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66586 0.56454 NaN 1 0 Median 7343700 4488400 2855300 5541300 3607200 1934100 0 0 0 1547700 734760 812980 114010 70125 43885 0 0 0 140700 76321 64383 7923 1510 8240 39467;39468;39469;39470 39371 39371 1 ESPHEPDPEPYEPIPPK AEREKGILQELFLNKESPHEPDPEPYEPIP PHEPDPEPYEPIPPKLIPLDEECSMDETPY K E S P K L 0 0 0 1 0 0 4 0 1 1 0 1 0 0 7 1 0 0 1 0 0 0 17 0 1956.9105 Q96QC0 Q96QC0 502 518 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 1.3443E-05 59.862 By MS/MS 1 0.34579 0.37769 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34579 0.37769 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10043000 7503600 2539300 0 0 0 0 0 0 10043000 7503600 2539300 0 0 0 0 0 0 0 0 0 7924 3718 8241 39471 39372 39372 1 ESPLLFK WLKLNKKVTAQDVRKESPLLFKFRAKFYPE VTAQDVRKESPLLFKFRAKFYPEDVSEELI K E S F K F 0 0 0 0 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 7 0 832.46945 P26038;V9GZ54 P26038 73 79 MSN Moesin yes no 2 0.041123 44.531 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.0505 0.97577 14.014 5 Median 0.76281 0.73403 NaN 1 0 Median 1.0441 0.88716 NaN 1 0 Median 1.0505 1.0571 NaN 1 0 Median 1.1262 0.97591 0.02115 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24482000 12489000 11993000 3022500 1688800 1333800 4782400 2338300 2444100 15104000 7743600 7360600 1573000 718350 854630 0 0 0 0 0 0 7925 2139 8242 39472;39473;39474;39475;39476 39373;39374;39375 39373 3 ESPLLFPYYPR GNQWYDFLQNSSHLKESPLLFPYYPRKSLH SHLKESPLLFPYYPRKSLHFVKRRMENIID K E S P R K 0 1 0 0 0 0 1 0 0 0 2 0 0 1 3 1 0 0 2 0 0 0 11 0 1380.7078 Q9UJX5 Q9UJX5 509 519 ANAPC4 Anaphase-promoting complex subunit 4 yes yes 2 0.0033329 73.248 By MS/MS 1 0.63193 0.67681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63193 0.67681 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3952400 2391400 1561000 0 0 0 0 0 0 3952400 2391400 1561000 0 0 0 0 0 0 0 0 0 7926 4302 8243 39477 39376 39376 1 ESPNITDR KEEEIEFLYNENTVRESPNITDRWILSFMQ YNENTVRESPNITDRWILSFMQSLIGFFET R E S D R W 0 1 1 1 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 8 0 930.44067 P41252;A0A0A0MSX9;J3KR24 P41252 687 694 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.011544 56.721 By MS/MS 2 1.3185 1.2791 93.093 2 Median NaN NaN NaN 0 0 Median 1.3185 1.2791 93.093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4328900 2073100 2255700 0 0 0 4328900 2073100 2255700 0 0 0 0 0 0 0 0 0 0 0 0 7927 2302 8244 39478;39479 39377;39378 39378 2 ESPPDFHKPMDTYYDSTR KSRLEFTKEVFHWARESPPDFHKPMDTYYD PDFHKPMDTYYDSTRGRLATYVLKKPEDLT R E S T R G 0 1 0 3 0 0 1 0 1 0 0 1 1 1 3 2 2 0 2 0 0 0 18 1 2184.9422 Q8NCM8 Q8NCM8 2218 2235 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.024394 26.237 By MS/MS 1 0.3103 0.32193 NaN 1 Median 0.3103 0.32193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10227000 7484700 2742200 10227000 7484700 2742200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7928 3418 8245 39480 39379 39379 1 ESQAKDVIEEYFK KVVGCSCVVVKDYGKESQAKDVIEEYFKCK GKESQAKDVIEEYFKCKK____________ K E S F K C 1 0 0 1 0 1 3 0 0 1 0 2 0 1 0 1 0 0 1 1 0 0 13 1 1584.7672 P25398 P25398 117 129 RPS12 40S ribosomal protein S12 yes yes 3 0.065358 25.647 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7929 2132 8246 39481 39380 39380 1 ESQDTSFTTLVER TETIAKLVKYMYDNRESQDTSFTTLVERVI NRESQDTSFTTLVERVIQQLEGAFALVFKS R E S E R V 0 1 0 1 0 1 2 0 0 0 1 0 0 1 0 2 3 0 0 1 0 0 13 0 1511.7104 Q06210 Q06210 164 176 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 8.938E-07 100.88 By MS/MS By matching 1 2 1.2037 1.0945 8.72 3 Median 1.2803 1.211 NaN 1 0 Median 1.1882 1.0556 5.1229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23078000 9594900 13483000 18770000 7644800 11125000 4308000 1950100 2357900 0 0 0 0 0 0 0 0 0 0 0 0 7930 2723 8247 39482;39483;39484 39381;39382 39382 2 ESQFLKEELVAAVEDVRK QATENFLEKGDKIAKESQFLKEELVAAVED FLKEELVAAVEDVRKQGDLMKAAAGEFADD K E S R K Q 2 1 0 1 0 1 4 0 0 0 2 2 0 1 0 1 0 0 0 3 0 0 18 2 2089.1055 P35221;G3XAM7;E5RIB1;E5RG03;E5RGY6;E5RJL0;E5RIE0;E5RHV7 P35221 82 99 CTNNA1 Catenin alpha-1 yes no 3 3.2394E-06 54.974 By MS/MS By matching By matching By matching 1 1 1 1 0.89493 0.85042 58.606 4 Median NaN NaN NaN 0 0 Median 1.0854 1.1488 NaN 1 0 Median 0.26596 0.30277 NaN 1 0 Median 1.0266 0.90357 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78014 0.80038 NaN 1 0 Median 6003700 3486700 2517000 0 0 0 4141300 2046100 2095200 1673300 1342500 330780 113070 52116 60953 0 0 0 75982 45918 30064 7931 2232 8248 39485;39486;39487;39488 39383 39383 1 ESQKVELSESR PQVHTPKTADSQETKESQKVELSESRLKAF QETKESQKVELSESRLKAFKVALLDVFREA K E S S R L 0 1 0 0 0 1 3 0 0 0 1 1 0 0 0 3 0 0 0 1 0 0 11 1 1290.6416 P25205;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 733 743 MCM3 DNA replication licensing factor MCM3 yes no 3 0.063342 14.561 By MS/MS 1 0.83087 0.86138 NaN 1 Median 0.83087 0.86138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2006500 1043800 962710 2006500 1043800 962710 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7932 2129 8249 39489 39384 39384 1 ESQSHPGDFVLSVR KLLTEKGKHGSFLVRESQSHPGDFVLSVRT RESQSHPGDFVLSVRTGDDKGESNDGKSKV R E S V R T 0 1 0 1 0 1 1 1 1 0 1 0 0 1 1 3 0 0 0 2 0 0 14 0 1556.7583 Q06124;A0A1W2PPU4 Q06124 139 152 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2;3 0.00011312 81.565 By MS/MS By MS/MS By matching 2 1 1 1.0219 0.92397 7.8378 4 Median 0.93514 0.88397 1.5576 2 0 Median 1.1039 0.95521 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2332 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50258000 24421000 25837000 40654000 20308000 20347000 9118000 3900700 5217300 0 0 0 486250 213170 273080 0 0 0 0 0 0 7933 2721 8250 39490;39491;39492;39493 39385;39386;39387;39388;39389;39390 39386 6 ESQSPDTTIQR KPDEQGLQQILQLLKESQSPDTTIQRTVQQ QLLKESQSPDTTIQRTVQQKLEQLNQYPDF K E S Q R T 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 2 2 0 0 0 0 0 11 0 1260.5946 Q92973;E7EW37 Q92973 29 39 TNPO1 Transportin-1 yes no 2 0.00094301 61.78 By matching By MS/MS 1 1 1.0855 1.0101 18.947 2 Median 1.1576 1.1549 NaN 1 0 Median 1.0179 0.88342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3103700 1491100 1612600 694670 369400 325270 2409000 1121700 1287300 0 0 0 0 0 0 0 0 0 0 0 0 7934 3570 8251 39494;39495 39391;39392 39392 2 ESQSVEEALK QVIAVHIDNGFMRKRESQSVEEALKKLGIQ FMRKRESQSVEEALKKLGIQVKVINAAHSF R E S L K K 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1118.5455 P49915 P49915 279 288 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.0066695 48.794 By MS/MS 1 1.1271 0.97117 NaN 1 Median NaN NaN NaN 0 0 Median 1.1271 0.97117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2732700 1135700 1597000 0 0 0 2732700 1135700 1597000 0 0 0 0 0 0 0 0 0 0 0 0 7935 2405 8252 39496 39393 39393 1 ESQSVEEALKK QVIAVHIDNGFMRKRESQSVEEALKKLGIQ MRKRESQSVEEALKKLGIQVKVINAAHSFY R E S K K L 1 0 0 0 0 1 3 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 11 1 1246.6405 P49915 P49915 279 289 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 0.0079414 55.064 By MS/MS By MS/MS By MS/MS 2 2 1 0.93972 0.88716 12.858 5 Median 0.93778 0.97092 12.758 2 0 Median 0.93636 0.87629 0.49661 2 2 Median 1.0116 1.1513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14696000 7285700 7409800 3196300 1732700 1463600 9259000 4434400 4824600 2240100 1118500 1121600 0 0 0 0 0 0 0 0 0 7936 2405 8253 39497;39498;39499;39500;39501 39394;39395;39396;39397;39398 39396 5 ESQTQDNITVR GPLVKLEADYDKKLKESQTQDNITVRWDLG KKLKESQTQDNITVRWDLGLNKKRIAYFTL K E S V R W 0 1 1 1 0 2 1 0 0 1 0 0 0 0 0 1 2 0 0 1 0 0 11 0 1289.6212 Q92900 Q92900 322 332 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00016921 79.974 By MS/MS By MS/MS 1 1 1.1177 0.95398 32.047 2 Median NaN NaN NaN 0 0 Median 0.89705 0.76054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3925 1.1966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4597800 2230600 2367200 0 0 0 4030100 2005000 2025100 0 0 0 567680 225620 342060 0 0 0 0 0 0 7937 3564 8254 39502;39503 39399;39400;39401 39400 3 ESQVSILQSLFGER ______________________________ RESQVSILQSLFGERHHFSFPSIFIYGHTA R E S E R H 0 1 0 0 0 2 2 1 0 1 2 0 0 1 0 3 0 0 0 1 0 0 14 0 1591.8206 O43913;G3V0H0 O43913 12 25 ORC5 Origin recognition complex subunit 5 yes no 2 8.1553E-06 91.936 By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 0.98502 0.95517 23.894 7 Median NaN NaN NaN 0 0 Median 0.86591 0.77037 17.249 2 0 Median 0.96464 0.9794 3.5418 2 0 Median 1.3002 1.1367 NaN 1 0 Median 0.85785 0.86696 NaN 1 0 Median 1.8641 1.4605 NaN 1 0 Median 12509000 6063300 6445400 0 0 0 706710 338730 367980 8356500 4139800 4216800 463990 190170 273820 1156400 654540 501900 1825000 740110 1084900 7938 1599 8255 39504;39505;39506;39507;39508;39509;39510 39402;39403;39404 39404 3 ESRYEEEEEQSR KDWDELEEEARKADRESRYEEEEEQSRSMS ADRESRYEEEEEQSRSMSRKRKASVHSSGR R E S S R S 0 2 0 0 0 1 6 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 12 1 1569.6543 Q9Y5B9 Q9Y5B9 1003 1014 SUPT16H FACT complex subunit SPT16 yes yes 3 0.037052 20.381 By matching By matching By MS/MS 2 1 4 0.93933 1.1303 21.401 7 Median 0.69914 0.76207 8.5954 2 0 Median NaN NaN NaN 0 0 Median 0.93933 1.1424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3081 1.1416 18.251 4 0 Median 2488300 1223800 1264500 895500 521220 374280 0 0 0 443700 192430 251270 0 0 0 0 0 0 1149100 510160 638940 7939 4456 8256 39511;39512;39513;39514;39515;39516;39517 39405 39405 1 ESSETPDQFMTADETR GEASKSQEMVHLVNKESSETPDQFMTADET SSETPDQFMTADETRNLQNVDMKIGV____ K E S T R N 1 1 0 2 0 1 3 0 0 0 0 0 1 1 1 2 3 0 0 0 0 0 16 0 1842.7578 H0YD13;H0Y2P0;P16070;H0YE40 H0YD13 180 195 CD44 CD44 antigen yes no 2 1.9386E-06 87.618 By MS/MS By matching 1 1 0.78559 0.74027 52.985 2 Median 1.1026 1.0767 NaN 1 0 Median 0.5597 0.50895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3670900 1882800 1788100 2891300 1362300 1529000 779620 520520 259100 0 0 0 0 0 0 0 0 0 0 0 0 7940 1139 8257 39518;39519 39406 39406 1 ESSLTEPVIVGLLK YHPQLAYCVVQFLEKESSLTEPVIVGLLKF KESSLTEPVIVGLLKFWPKTHSPKEVMFLN K E S L K F 0 0 0 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 2 0 0 14 0 1483.8498 E9PFR3;Q14738 E9PFR3 346 359 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 9.0957E-05 83 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 0.94508 0.84476 16.007 5 Median 0.74422 0.72753 14.174 2 0 Median 1.0888 0.92 NaN 1 0 Median 0.94508 1.0068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0239 0.84476 NaN 1 0 Median 22214000 11669000 10545000 10876000 6308400 4567500 6200300 2755300 3445000 1543900 730660 813220 0 0 0 0 0 0 3594200 1875100 1719100 7941 920 8258 39520;39521;39522;39523;39524 39407;39408;39409;39410;39411;39412 39409 6 ESSPLYSPTFSDSTSAVK EKLSPKSDISPLTPRESSPLYSPTFSDSTS PLYSPTFSDSTSAVKEKTATCHSSSSPPID R E S V K E 1 0 0 1 0 0 1 0 0 0 1 1 0 1 2 6 2 0 1 1 0 0 18 0 1901.8895 P46821 P46821 1791 1808 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 6.2725E-06 60.628 By MS/MS By MS/MS 2 2 0.84405 0.83295 11.285 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71754 0.78324 11.176 2 0 Median 0.94022 0.88274 10.684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18816000 10176000 8639900 0 0 0 0 0 0 14920000 8176700 6742800 3896100 1999000 1897100 0 0 0 0 0 0 7942 2347 8259 39525;39526;39527;39528 39413;39414;39415;39416 39414 4 ESSSEQYVPDVFYK CLLPCKDAPELGYAKESSSEQYVPDVFYKD KESSSEQYVPDVFYKDVDKFGNEITQLARP K E S Y K D 0 0 0 1 0 1 2 0 0 0 0 1 0 1 1 3 0 0 2 2 0 0 14 0 1676.757 Q8TAT6 Q8TAT6 414 427 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.00087248 57.348 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.078 1.0138 17.251 4 Median 0.86888 0.82598 NaN 1 0 Median 1.4434 1.2475 NaN 1 0 Median 1.0314 1.0618 NaN 1 0 Median 1.1266 0.96793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17708000 8754000 8954200 7182500 3738000 3444500 1687200 664800 1022400 7859500 3911900 3947600 979040 439320 539710 0 0 0 0 0 0 7943 3456 8260 39529;39530;39531;39532 39417;39418;39419;39420 39418 4 ESSSIYISK AILGFAFKKDTGDTRESSSIYISKYLMDEG DTGDTRESSSIYISKYLMDEGAHLHIYDPK R E S S K Y 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0 4 0 0 1 0 0 0 9 0 1012.5077 O60701 O60701 347 355 UGDH UDP-glucose 6-dehydrogenase yes yes 2 0.026911 37.191 By matching By MS/MS 1 1 0.87632 0.91346 6.5026 2 Median 0.69168 0.87241 NaN 1 0 Median 1.1102 0.95644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3149200 1577200 1572000 1421700 710060 711670 1727400 867100 860330 0 0 0 0 0 0 0 0 0 0 0 0 7944 1627 8261 39533;39534 39421 39421 1 ESSTVFELK ______________________________ IFTDAKESSTVFELKRIVEGILKRPPDEQR K E S L K R 0 0 0 0 0 0 2 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 9 0 1038.5233 B8ZZU8;I3L0M9;Q15370;A0A0B4J296 B8ZZU8 15 23 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 0.0025948 70.919 By MS/MS By MS/MS By MS/MS 2 1 1 1.1187 0.9725 9.4627 4 Median NaN NaN NaN 0 0 Median 1.24 1.0441 5.7728 2 0 Median 0.98405 0.94358 NaN 1 0 Median 1.0743 0.86951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23760000 10629000 13131000 0 0 0 11342000 4518200 6823300 9293100 4571700 4721400 3124900 1538700 1586200 0 0 0 0 0 0 7945 651 8262 39535;39536;39537;39538 39422;39423;39424;39425;39426;39427 39425 6 ESSTVFELKR ______________________________ FTDAKESSTVFELKRIVEGILKRPPDEQRL K E S K R I 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 10 1 1194.6245 B8ZZU8;I3L0M9;Q15370;A0A0B4J296 B8ZZU8 15 24 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2;3 5.0995E-05 141.2 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 1.1268 0.99488 25.494 5 Median 0.9698 0.95223 NaN 1 0 Median 1.2275 1.0835 12.071 2 0 Median 1.2363 1.2811 NaN 1 0 Median 0.81487 0.66267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101060000 34799000 66259000 33800000 12383000 21417000 45440000 15675000 29765000 19782000 5779000 14003000 2036800 961200 1075600 0 0 0 0 0 0 7946 651 8263 39539;39540;39541;39542;39543;39544;39545;39546;39547 39428;39429;39430;39431;39432;39433;39434;39435;39436;39437;39438;39439 39436 12 ESTAEKDEL EEMDVGTDEEEETAKESTAEKDEL______ EEETAKESTAEKDEL_______________ K E S E L - 1 0 0 1 0 0 3 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 9 1 1020.4611 P14625;Q58FF3 P14625 795 803 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.031091 54.157 By MS/MS By MS/MS By matching By matching 4 2 1 1 1.1079 1.0052 14.499 8 Median 1.0245 0.99941 16.928 4 0 Median 1.1714 1.0148 6.1719 2 0 Median 1.1825 1.2282 NaN 1 0 Median 1.1196 0.98206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40502000 18483000 22019000 19397000 9127700 10270000 19922000 8791700 11130000 772410 340480 431930 410000 223080 186920 0 0 0 0 0 0 7947 2006 8264 39548;39549;39550;39551;39552;39553;39554;39555 39440;39441 39441 2 ESTEFLQQNPVTEYMK FESQFLADTERFYTRESTEFLQQNPVTEYM STEFLQQNPVTEYMKKAEARLLEEQRRVQV R E S M K K 0 0 1 0 0 2 3 0 0 0 1 1 1 1 1 1 2 0 1 1 0 0 16 0 1942.8982 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UJR3;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 223 238 CUL1 Cullin-1 yes no 2 0.00013579 57.019 By MS/MS By matching 1 1 1.2959 1.2623 24.856 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96969 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7318 1.5049 NaN 1 0 Median 10434000 4908000 5525800 0 0 0 0 0 0 10307000 4866700 5439800 0 0 0 0 0 0 127190 41232 85953 7948 256 8265 39556;39557 39442;39443;39444 39444 3 ESTGAQVQVAGDMLPNSTER GSLIGKGGCKIKEIRESTGAQVQVAGDMLP QVQVAGDMLPNSTERAITIAGIPQSIIECV R E S E R A 2 1 1 1 0 2 2 2 0 0 1 0 1 0 1 2 2 0 0 2 0 0 20 0 2088.9746 Q15365;H3BRU6;F8VZX2;F8W0G4;F8VXH9;J3QT27;E9PFP8;P57721;Q15366 Q15366 125 144 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2;3 1.8928E-99 254.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 14 9 9 7 0.99433 0.88691 20.257 54 Median 0.8338 0.8323 13.868 7 0 Median 1.0013 0.85471 10.57 8 0 Median 0.91479 0.91669 9.9255 14 0 Median 1.0245 0.8733 9.1489 9 0 Median 1.3627 1.3791 22.514 9 0 Median 1.0004 0.82241 10.657 7 0 Median 1065200000 549810000 515380000 123460000 65735000 57721000 20527000 9929900 10597000 753180000 398550000 354640000 53791000 26398000 27393000 95526000 40193000 55333000 18705000 9011400 9693400 7949 2942;1077;2941 8266;8267 39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602;39603;39604;39605;39606;39607;39608;39609;39610;39611 39445;39446;39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457;39458;39459;39460;39461;39462;39463;39464;39465;39466;39467;39468;39469;39470;39471;39472;39473;39474;39475;39476;39477;39478;39479;39480;39481;39482;39483;39484;39485;39486;39487;39488;39489;39490;39491;39492;39493;39494;39495;39496;39497;39498;39499;39500;39501;39502;39503;39504;39505;39506;39507;39508;39509;39510;39511;39512;39513;39514;39515;39516;39517;39518;39519;39520 39488 362 76 ESTGTSGPLQRPQLSK EQLVSSAPTLSAPEKESTGTSGPLQRPQLS STGTSGPLQRPQLSKVKRKKPRGLFS____ K E S S K V 0 1 0 0 0 2 1 2 0 0 2 1 0 0 2 3 2 0 0 0 0 0 16 1 1684.8744 H7C0G7;Q9H9Q4 H7C0G7 198 213 NHEJ1 Non-homologous end-joining factor 1 yes no 3 0.0017178 32.995 By matching By MS/MS 1 1 0.67691 0.6332 24.644 2 Median NaN NaN NaN 0 0 Median 0.5737 0.53193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79869 0.75374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456000 2599300 1856700 0 0 0 543050 310210 232840 0 0 0 3912900 2289100 1623900 0 0 0 0 0 0 7950 1256 8268 39612;39613 39521;39522 39521 2 ESTLGPDHPAVAATLNNLAVLYGK YKEAAHLLNDALSIRESTLGPDHPAVAATL AVAATLNNLAVLYGKRGKYKEAEPLCQRAL R E S G K R 4 0 2 1 0 0 1 2 1 0 4 1 0 0 2 1 2 0 1 2 0 0 24 0 2450.2805 Q9NSK0 Q9NSK0 284 307 KLC4 Kinesin light chain 4 yes yes 3 0.0089327 19.549 By MS/MS By matching 1 1 0.61933 0.56628 4.7936 2 Median 0.56576 0.5474 NaN 1 0 Median 0.67797 0.5858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3232700 1746500 1486200 1617100 892310 724800 1615600 854220 761350 0 0 0 0 0 0 0 0 0 0 0 0 7951 4105 8269 39614;39615 39523 39523 1 ESTLHLVLR QLEDGRTLSDYNIQKESTLHLVLRLRGGMQ DYNIQKESTLHLVLRLRGGMQIFVKTLTGK K E S L R L 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 1066.6135 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;M0R2S1;M0R1M6;A0A2R8Y422 P0CG48 64 72 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2 2.4446E-32 214.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 12 13 10 11 8 1.3758 1.0236 38.102 68 Plateau 1.0732 1.0409 18.644 14 4 Median 1.2073 1.0015 15.659 12 0 Median 1.0618 1.1493 42.335 13 3 Median 0.83766 1.0099 28.293 10 0 Plateau 1.1314 1.1493 42.169 11 0 Median 1.4991 1.2114 39.361 8 0 Median 6171400000 2740600000 3430800000 477220000 215990000 261240000 505000000 223460000 281540000 439770000 214980000 224780000 518380000 217620000 300770000 3064600000 1412000000 1652600000 1166400000 456540000 709850000 7952 606 8270 39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633;39634;39635;39636;39637;39638;39639;39640;39641;39642;39643;39644;39645;39646;39647;39648;39649;39650;39651;39652;39653;39654;39655;39656;39657;39658;39659;39660;39661;39662;39663;39664;39665;39666;39667;39668;39669;39670;39671;39672;39673;39674;39675;39676;39677;39678;39679;39680;39681;39682;39683 39524;39525;39526;39527;39528;39529;39530;39531;39532;39533;39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554;39555;39556;39557;39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602;39603;39604;39605;39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633 39538 110 ESVDHLTIPSR ELEELSGAKISDLHRESVDHLTIPSRCGKG DLHRESVDHLTIPSRCGKGSLHRISEVFDC R E S S R C 0 1 0 1 0 0 1 0 1 1 1 0 0 0 1 2 1 0 0 1 0 0 11 0 1252.6412 P41252;A0A0A0MSX9;J3KR24 P41252 501 511 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 0.00015337 82.749 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.92922 0.84255 12.458 6 Median 0.87189 0.84089 14.756 2 0 Median 1.006 0.84665 16.454 2 0 Median NaN NaN NaN 0 0 Median 1.1332 0.9652 NaN 1 0 Median 0.72991 0.76056 NaN 1 0 Median NaN NaN NaN 0 0 Median 32976000 17359000 15617000 17286000 9326900 7958800 12773000 6540700 6231800 0 0 0 1822900 855330 967570 1095100 636190 458870 0 0 0 7953 2302 8271 39684;39685;39686;39687;39688;39689 39634;39635;39636;39637;39638;39639;39640 39637 7 ESVEDKLELR LEALGKELEHLSHIKESVEDKLELRRKQFH LSHIKESVEDKLELRRKQFHVLLSTIHELQ K E S L R R 0 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1216.6299 Q6I9Y2;A0A024R341 Q6I9Y2 154 163 THOC7;NIF3L1BP1 THO complex subunit 7 homolog yes no 3 0.011201 32.606 By MS/MS By matching 1 1 1.1394 1.0886 15.17 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94823 0.97792 NaN 1 0 Median 1.3691 1.2119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3227800 1554600 1673200 0 0 0 0 0 0 3032900 1483400 1549500 194870 71159 123710 0 0 0 0 0 0 7954 3136 8272 39690;39691 39641;39642 39641 2 ESVEDKLELRR LEALGKELEHLSHIKESVEDKLELRRKQFH SHIKESVEDKLELRRKQFHVLLSTIHELQQ K E S R R K 0 2 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 2 1372.731 Q6I9Y2;A0A024R341 Q6I9Y2 154 164 THOC7;NIF3L1BP1 THO complex subunit 7 homolog yes no 3 0.02037 25.437 By MS/MS 1 1.7932 1.5548 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7932 1.5548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 825680 275530 550160 0 0 0 0 0 0 0 0 0 825680 275530 550160 0 0 0 0 0 0 7955 3136 8273 39692 39643 39643 1 ESVELALK QGNLKGDGLCCYLKRESVELALKLLDEDEI LCCYLKRESVELALKLLDEDEIRGYKLHVE R E S L K L 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 887.4964 O43719;Q5H918;Q5H919 O43719 192 199 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.028842 40.103 By MS/MS By matching By MS/MS 1 1 1 1.0234 0.86809 119.65 3 Median 1.216 1.2034 NaN 1 0 Median 0.13812 0.13118 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0234 0.86809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7805700 4889000 2916700 2970600 1318800 1651800 2839400 2565600 273780 0 0 0 1995700 1004600 991130 0 0 0 0 0 0 7956 1586 8274 39693;39694;39695 39644;39645 39645 2 ESVEQQADSFK NLSLAVSDCFWKMVRESVEQQADSFKATRF KMVRESVEQQADSFKATRFNLETEWKNNYP R E S F K A 1 0 0 1 0 2 2 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 11 0 1266.5728 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53 A0A2R8Y3X5 452 462 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.00018743 109.71 By MS/MS By MS/MS 2 1 0.99112 0.93627 20.022 3 Median 0.89738 0.8724 9.9927 2 0 Median 1.3616 1.2068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8342700 4240000 4102800 6539200 3355400 3183700 1803600 884540 919030 0 0 0 0 0 0 0 0 0 0 0 0 7957 357 8275 39696;39697;39698 39646;39647;39648 39648 3 ESVFTVEGGHR LKLLLGAGAVAYGVRESVFTVEGGHRAIFF YGVRESVFTVEGGHRAIFFNRIGGVQQDTI R E S H R A 0 1 0 0 0 0 2 2 1 0 0 0 0 1 0 1 1 0 0 2 0 0 11 0 1216.5836 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6;F5H0C5;F5H2D2 J3KPX7 38 48 PHB2 Prohibitin-2 yes no 2;3 7.3491E-22 200.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 1 2 1.4466 1.2201 28.452 13 Median 0.97869 0.94687 2.3947 3 0 Median 1.4466 1.2027 42.349 3 0 Median 1.1736 1.1558 7.6615 2 0 Median 1.629 1.3588 10.805 2 0 Median 1.7999 1.9288 NaN 1 0 Median 1.5887 1.3182 0.75472 2 0 Median 210000000 92826000 117170000 83175000 41656000 41519000 93843000 38149000 55694000 13999000 6083200 7915500 12522000 4579900 7941800 1694200 660150 1034100 4764400 1698600 3065800 7958 1313 8276 39699;39700;39701;39702;39703;39704;39705;39706;39707;39708;39709;39710;39711 39649;39650;39651;39652;39653;39654;39655;39656;39657;39658;39659;39660;39661 39651 13 ESVLQFYPK FQKKHVGRSKAQVAKESVLQFYPKANIVAY KAQVAKESVLQFYPKANIVAYHDSIMNPDY K E S P K A 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 0 0 9 0 1109.5757 Q9UBT2;K7EPL2 Q9UBT2 78 86 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.004416 60.76 By MS/MS 1 0.82832 0.73979 NaN 1 Median 0.82832 0.73979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21230000 12308000 8922300 21230000 12308000 8922300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7959 4247 8277 39712 39662 39662 1 ESVLQMMQAGQR VKTIRDIIALNPLYRESVLQMMQAGQRVVD LYRESVLQMMQAGQRVVDNPIYLSDMGAAL R E S Q R V 1 1 0 0 0 3 1 1 0 0 1 0 2 0 0 1 0 0 0 1 0 0 12 0 1376.6541 K7EKE6;P36776;K7EJE8 K7EKE6 198 209 LONP1 Lon protease homolog, mitochondrial yes no 2 9.7713E-14 134.91 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.3055 1.2436 9.6854 4 Median 1.073 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1592 1.2345 NaN 1 1 Median 1.4702 1.271 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5013 1.2526 NaN 1 0 Median 20166000 9194600 10972000 12888000 5791700 7096000 0 0 0 6565300 3128200 3437000 425920 163970 261950 0 0 0 287500 110700 176800 7960 1370 8278 39713;39714;39715;39716;39717 39663;39664;39665 39665 3 ESVLTATSILNNPIVK DHIKGKQAYKEQIKRESVLTATSILNNPIV SVLTATSILNNPIVKARYERFVKGENPFEI R E S V K A 1 0 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 16 0 1697.9564 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 444 459 ZNF326 DBIRD complex subunit ZNF326 yes no 2;3 3.0116E-10 112.15 By matching By MS/MS By matching By MS/MS By matching 1 2 1 7 2 0.96898 1.0121 30.094 13 Median NaN NaN NaN 0 0 Median 1.1668 1.0311 NaN 1 0 Median 0.65741 0.69257 44.285 2 0 Median 1.298 1.1136 NaN 1 0 Median 0.96596 0.98711 32.521 7 0 Median 1.253 1.0638 0.74817 2 0 Median 64778000 32110000 32668000 0 0 0 140310 68782 71529 7577700 4119400 3458200 383150 171530 211620 54728000 26910000 27817000 1949400 840520 1108900 7961 3042 8279 39718;39719;39720;39721;39722;39723;39724;39725;39726;39727;39728;39729;39730 39666;39667;39668;39669;39670;39671;39672;39673;39674 39670 9 ESVNAAFEMTLTEGSKLEK EKIASNSKIVVAMAKESVNAAFEMTLTEGS AAFEMTLTEGSKLEKKLFYSTFATDDRKEG K E S E K K 2 0 1 0 0 0 4 1 0 0 2 2 1 1 0 2 2 0 0 1 0 0 19 1 2083.0143 P30084 P30084 242 260 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 3 0.00077524 30.094 By matching By MS/MS 1 1 1.1064 1.0683 28.723 2 Median 0.85607 0.8719 NaN 1 0 Median 1.43 1.3088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4968500 1988400 2980100 2475500 1151900 1323600 2493000 836490 1656500 0 0 0 0 0 0 0 0 0 0 0 0 7962 2186 8280 39731;39732 39675;39676 39675 2 ESVNQDKESQELR IQCKESQKLVEIHLRESVNQDKESQELRKS LRESVNQDKESQELRKSEDCRESEIETNTE R E S L R K 0 1 1 1 0 2 3 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 13 1 1560.738 Q5VUA4 Q5VUA4 1753 1765 ZNF318 Zinc finger protein 318 yes yes 3 0.06226 13.717 By matching By MS/MS 1 1 0.88186 0.97346 7.7577 2 Median 1.0031 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77525 0.9215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1684200 936110 748080 219060 101930 117130 0 0 0 1465100 834180 630950 0 0 0 0 0 0 0 0 0 7963 3113 8281 39733;39734 39677 39677 1 ESVPEFPLSPPK ASGQAFELILSPRSKESVPEFPLSPPKKKD RSKESVPEFPLSPPKKKDLSLEEIQKKLEA K E S P K K 0 0 0 0 0 0 2 0 0 0 1 1 0 1 4 2 0 0 0 1 0 0 12 0 1325.6867 A2A2D0;P16949 A2A2D0 30 41 STMN1 Stathmin yes no 2 0.00025442 99.815 By MS/MS By MS/MS By matching 1 2 1 0.58438 0.54513 9.3987 4 Median 0.52961 0.49723 NaN 1 1 Median 0.59017 0.59187 4.8884 2 0 Median NaN NaN NaN 0 0 Median 0.64481 0.51975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60151000 40097000 20054000 52415000 35644000 16771000 7594400 4361300 3233200 0 0 0 141540 91232 50311 0 0 0 0 0 0 7964 496 8282 39735;39736;39737;39738 39678;39679;39680;39681;39682;39683;39684;39685;39686 39679 9 ESVPPSIIMSSQK HKLSNNYYCTRDGRRESVPPSIIMSSQKAL RRESVPPSIIMSSQKALVSGKPAESSAVAA R E S Q K A 0 0 0 0 0 1 1 0 0 2 0 1 1 0 2 4 0 0 0 1 0 0 13 0 1401.7174 O95182 O95182 62 74 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes yes 2 0.0009775 61.353 By MS/MS 1 0.62655 0.57287 NaN 1 Median 0.62655 0.57287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5287800 2901700 2386100 5287800 2901700 2386100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7965 1752 8283 39739 39687;39688 39688 2 ESVQITAER RKKDDRIEELEEALRESVQITAEREMVLAQ LEEALRESVQITAEREMVLAQEESARTNAE R E S E R E 1 1 0 0 0 1 2 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 9 0 1031.5247 X6RLX0;Q8IUD2;G8JLD3;K7EPD6;A0A0U1RQN0 X6RLX0 852 860 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00076799 99.139 By MS/MS By MS/MS By matching 1 1 1 0.89422 0.7568 9.2418 2 Median NaN NaN NaN 0 0 Median 0.84057 0.70892 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95128 0.80791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10640000 5812200 4827400 0 0 0 5291400 3115600 2175800 0 0 0 4902500 2418500 2484000 0 0 0 445690 278100 167600 7966 3311 8284 39740;39741;39742 39689;39690;39691;39692 39689 4 ESVQQAIASGITAQQIIHFLR MLYRFPNMVVAQVTRESVQQAIASGITAQQ IASGITAQQIIHFLRTRAHPVMLKQTPVLP R E S L R T 3 1 0 0 0 4 1 1 1 4 1 0 0 1 0 2 1 0 0 1 0 0 21 0 2309.2492 Q92759 Q92759 349 369 GTF2H4 General transcription factor IIH subunit 4 yes yes 2;3 2.7044E-12 76.539 By MS/MS By MS/MS 1 2 0.95463 0.94516 4.1163 3 Median NaN NaN NaN 0 0 Median 1.151 1.0002 NaN 1 1 Median 0.95172 0.93415 1.6575 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10754000 5366300 5387400 0 0 0 1491900 719070 772850 9261800 4647200 4614600 0 0 0 0 0 0 0 0 0 7967 3553 8285 39743;39744;39745 39693;39694;39695;39696 39693 4 ESWEMNSEEKLEQSTIVK ELKYELHLKSFEKAKESWEMNSEEKLEQST EMNSEEKLEQSTIVKERGTVYFKEGKYKQA K E S V K E 0 0 1 0 0 1 5 0 0 1 1 2 1 0 0 3 1 1 0 1 0 0 18 1 2166.0151 Q02790 Q02790 257 274 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3 0.0048606 25.508 By MS/MS 1 0.93804 0.90018 NaN 1 Median 0.93804 0.90018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5461200 2813100 2648100 5461200 2813100 2648100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7968 2701 8286 39746 39697;39698 39697 2 ESYAIQYLQK WMHHTVDLLGDKATKESYAIQYLQKSLEAD DKATKESYAIQYLQKSLEADPNSGQSWYFL K E S Q K S 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 10 0 1241.6292 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248;F5GWV3 O15550 266 275 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 2 0.0030693 73.931 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7969 111 8287 39747 39699 39699 1 ESYDDVSSFR FGFGGKKKGSKWNTRESYDDVSSFRAKTAH KWNTRESYDDVSSFRAKTAHGRGLKRPGKK R E S F R A 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 3 0 0 1 1 0 0 10 0 1203.5044 H7C2Q8;Q99848 H7C2Q8 318 327 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.00039724 122.52 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 1.1998 1.0511 12.88 9 Median NaN NaN NaN 0 0 Median 1.2113 1.0511 NaN 1 0 Median 1.1854 1.2889 NaN 1 0 Median 1.1297 0.99123 NaN 1 0 Median 1.1859 1.1951 12.278 3 0 Median 1.2291 1.0146 1.5643 3 0 Median 53911000 23959000 29951000 0 0 0 4375000 1624700 2750300 8293200 3849300 4443900 1897200 838790 1058400 29838000 13349000 16489000 9507200 4297100 5210100 7970 1262 8288 39748;39749;39750;39751;39752;39753;39754;39755;39756 39700;39701;39702;39703;39704;39705;39706;39707 39701 8 ESYEVSLTQK KRKNITYEELRNKNRESYEVSLTQKTDPSV RNKNRESYEVSLTQKTDPSVRPMHERVPKK R E S Q K T 0 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 10 0 1182.5768 D6RDK6;D6RBN5;Q9NX40 D6RDK6 154 163 OCIAD1 OCIA domain-containing protein 1 yes no 2 0.00041856 119.21 By MS/MS By MS/MS By MS/MS 2 1 1 1.4899 1.3445 13.569 4 Median 1.4903 1.501 10.219 2 0 Median 1.3922 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5285 1.2945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35476000 14868000 20608000 18868000 8382000 10486000 15045000 5857000 9187800 0 0 0 1562900 629290 933650 0 0 0 0 0 0 7971 815 8289 39757;39758;39759;39760 39708;39709;39710;39711;39712 39708 5 ESYPVFYLFR DKLNMELSEKYKLDKESYPVFYLFRDGDFE YKLDKESYPVFYLFRDGDFENPVPYTGAVK K E S F R D 0 1 0 0 0 0 1 0 0 0 1 0 0 2 1 1 0 0 2 1 0 0 10 0 1319.655 P30040;F8VY02 P30040 113 122 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 0.00041485 101.64 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.2844 1.066 12.128 5 Median 1.0033 0.9484 NaN 1 0 Median 1.2844 1.0975 NaN 1 0 Median 1.226 1.1622 17.56 2 0 Median 1.3009 1.066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12608000 5881800 6726000 6430200 3135500 3294800 362660 150900 211750 5456300 2454600 3001800 358570 140840 217730 0 0 0 0 0 0 7972 2178 8290 39761;39762;39763;39764;39765 39713;39714;39715;39716;39717;39718;39719;39720;39721;39722 39715 10 ESYSALMR GFDWSDRNTNMTAKKESYSALMRELELKEK TNMTAKKESYSALMRELELKEKKIKELQNA K E S M R E 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 8 0 955.44332 Q15149;H0YDN1 Q15149 793 800 PLEC Plectin yes no 2 0.0069954 68.915 By matching By matching By MS/MS 1 1 1 1.3725 1.1513 14.724 3 Median NaN NaN NaN 0 0 Median 1.3725 1.1513 NaN 1 0 Median 0.86853 0.95306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5195 1.2738 NaN 1 0 Median 9456000 4050400 5405600 0 0 0 5680500 2252700 3427800 3030600 1563900 1466700 0 0 0 0 0 0 744940 233860 511080 7973 2933 8291 39766;39767;39768 39723 39723 1 ESYSIYVYK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH RKRSRKESYSIYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 3 1 0 0 9 0 1150.5546 Q16778;P33778;P23527;P06899;Q8N257 Q16778 36 44 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2 0.0036618 63.565 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 7 5 1.349 1.1042 18.903 19 Median 1.3544 1.2757 NaN 1 0 Median 1.8213 1.5377 2.2218 2 0 Median 0.8509 0.83645 27.657 2 0 Median 1.6363 1.3422 6.564 2 0 Median 0.97827 0.99671 3.6592 7 0 Median 1.4088 1.1658 4.6323 5 0 Median 3096100000 1390100000 1706000000 21464000 8779700 12685000 12517000 4264900 8252400 28411000 13366000 15045000 9238800 3489900 5748900 1470800000 741790000 729020000 1553700000 618420000 935280000 7974 2117 8292 39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787 39724;39725;39726;39727;39728;39729;39730;39731;39732;39733;39734;39735;39736;39737;39738;39739;39740;39741;39742;39743;39744;39745;39746;39747;39748;39749;39750;39751;39752;39753;39754;39755;39756;39757;39758 39755 35 ESYSIYVYKVLK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH SRKESYSIYVYKVLKQVHPDTGISSKAMGI K E S L K Q 0 0 0 0 0 0 1 0 0 1 1 2 0 0 0 2 0 0 3 2 0 0 12 1 1490.8021 Q16778;P33778;P23527;P06899;Q8N257 Q16778 36 47 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 3 0.007537 31.228 By MS/MS By matching 2 1 0.95623 1.0812 31.609 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73105 0.80182 44.634 2 0 Median 0.9634 0.82648 NaN 1 0 Median 9382900 4769200 4613700 0 0 0 0 0 0 0 0 0 0 0 0 6684200 3385000 3299200 2698700 1384200 1314500 7975 2117 8293 39788;39789;39790 39759;39760 39760 2 ESYSVYVYK KAQKKDGKKRKRSRKESYSVYVYKVLKQVH RKRSRKESYSVYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 3 2 0 0 9 0 1136.539 U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 36 44 HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2 0.0038329 69.198 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 9 5 1.0244 1.0873 15.75 22 Median NaN NaN NaN 0 0 Median 1.7039 1.4285 6.5515 2 0 Median 1.0895 1.0256 9.245 2 1 Median 1.8155 1.4848 28.962 4 0 Linear 0.97976 1.0158 5.2418 9 0 Median 1.461 1.1919 6.1259 5 0 Median 3928700000 1856000000 2072700000 0 0 0 36479000 13146000 23332000 76034000 35018000 41016000 35543000 13355000 22188000 2642700000 1332200000 1310500000 1138000000 462280000 675700000 7976 2521 8294 39791;39792;39793;39794;39795;39796;39797;39798;39799;39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813 39761;39762;39763;39764;39765;39766;39767;39768;39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787;39788;39789;39790;39791;39792;39793;39794;39795;39796;39797 39793 37 ESYTEEIVSEAESHVSGISR PVSSVRKKPKVTPTKESYTEEIVSEAESHV EIVSEAESHVSGISRIVLPTEKTTGARRSK K E S S R I 1 1 0 0 0 0 5 1 1 2 0 0 0 0 0 5 1 0 1 2 0 0 20 0 2208.0182 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 133 152 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3 0.040537 11.249 By MS/MS By matching 1 2 1.2715 1.3449 48.524 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2715 1.3449 NaN 1 0 Median 1.0853 0.89433 59.996 2 0 Median 6570200 2873600 3696600 0 0 0 0 0 0 0 0 0 0 0 0 3117200 1579900 1537400 3452900 1293700 2159200 7977 3067 8295 39814;39815;39816 39798 39798 1 ESYVETELIFALAK EELVKYLQMARKKARESYVETELIFALAKT RESYVETELIFALAKTNRLAELEEFINGPN R E S A K T 2 0 0 0 0 0 3 0 0 1 2 1 0 1 0 1 1 0 1 1 0 0 14 0 1611.8396 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1170 1183 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00079859 60.102 By MS/MS 1 1.3478 1.1966 NaN 1 Median NaN NaN NaN 0 0 Median 1.3478 1.1966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3599500 1520600 2078800 0 0 0 3599500 1520600 2078800 0 0 0 0 0 0 0 0 0 0 0 0 7978 44 8296 39817 39799 39799 1 ESYYQLMK TDSSDPMGPAESLFKESYYQLMKTALKEDG PAESLFKESYYQLMKTALKEDGVLCCQGEC K E S M K T 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 2 0 0 0 8 0 1060.4899 P19623;K7EQ47 P19623 187 194 SRM Spermidine synthase yes no 2 0.015619 50.025 By MS/MS By matching By matching 2 1 1 1.292 1.0839 14.169 4 Median 1.1496 1.0678 23.469 2 0 Median 1.2285 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3588 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20130000 8273900 11856000 16367000 6670600 9696400 3621600 1531200 2090400 0 0 0 141440 72177 69263 0 0 0 0 0 0 7979 2068 8297 39818;39819;39820;39821 39800 39800 1 ETAAGGLTLKEER EAALLDSSLEGPLPKETAAGGLTLKEERSP PKETAAGGLTLKEERSPQTLAPVGEDAMKT K E T E R S 2 1 0 0 0 0 3 2 0 0 2 1 0 0 0 0 2 0 0 0 0 0 13 1 1373.7151 Q92797 Q92797 1230 1242 SYMPK Symplekin yes yes 2;3 0.0001532 90.653 By MS/MS By MS/MS 2 3 0.82288 0.7908 15.322 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86754 0.98299 16.405 2 0 Median 0.82288 0.77231 1.578 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21263000 10946000 10317000 0 0 0 0 0 0 16225000 8286400 7939000 5037200 2659500 2377700 0 0 0 0 0 0 7980 3558 8298 39822;39823;39824;39825;39826 39801;39802;39803;39804;39805 39802 5 ETADTDTADQVMASFK LGVVTFQAFIDFMSRETADTDTADQVMASF TADTDTADQVMASFKILAGDKNYITMDELR R E T F K I 3 0 0 3 0 1 1 0 0 0 0 1 1 1 0 1 3 0 0 1 0 0 16 0 1728.7512 P12814;H9KV75;H0YJW3 P12814 819 834 ACTN1 Alpha-actinin-1 yes no 2 2.4001E-05 83.314 By MS/MS By matching By matching 1 1 1 1.1399 1.1042 15.481 3 Median 1.1399 1.1042 NaN 1 0 Median 1.0153 0.91403 NaN 1 0 Median 1.1931 1.2423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11521000 4949100 6572200 9757100 4165400 5591800 483430 231210 252220 1280700 552500 728220 0 0 0 0 0 0 0 0 0 7981 1983 8299 39827;39828;39829 39806;39807 39807 2 ETAEAYLGK FAPEEISAMVLTKMKETAEAYLGKKVTHAV VLTKMKETAEAYLGKKVTHAVVTVPAYFND K E T G K K 2 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 980.48148 P11021 P11021 155 163 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.0073226 51.854 By MS/MS 1 1.2867 1.0785 NaN 1 Median NaN NaN NaN 0 0 Median 1.2867 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10136000 4571400 5565100 0 0 0 10136000 4571400 5565100 0 0 0 0 0 0 0 0 0 0 0 0 7982 1948 8300 39830 39808 39808 1 ETAEAYLGKK FAPEEISAMVLTKMKETAEAYLGKKVTHAV LTKMKETAEAYLGKKVTHAVVTVPAYFNDA K E T K K V 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 1 0 1 0 0 0 10 1 1108.5764 P11021 P11021 155 164 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.00087659 88.948 By MS/MS By MS/MS 1 1 0.50653 0.49784 64.275 2 Median 0.75825 0.78429 NaN 1 0 Median 0.33837 0.31602 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11453000 8315800 3137000 2024200 1044100 980160 9428600 7271700 2156800 0 0 0 0 0 0 0 0 0 0 0 0 7983 1948 8301 39831;39832 39809;39810 39810 2 ETAELSETLTR CGRKEEWPVPGVAPKETAELSETLTREAQG VAPKETAELSETLTREAQGNSSAGVEAAEQ K E T T R E 1 1 0 0 0 0 3 0 0 0 2 0 0 0 0 1 3 0 0 0 0 0 11 0 1248.6198 A0A0G2JHC2;Q6NYC8 A0A0G2JHC2 291 301 PPP1R18 Phostensin yes no 2 0.0068238 50.292 By MS/MS By MS/MS By matching 2 1 1 0.58932 0.60542 166.8 3 Median 0.20448 0.20576 218.81 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58932 0.60542 NaN 1 0 Median NaN NaN NaN 0 0 Median 13768000 11336000 2431900 12651000 10649000 2002000 0 0 0 0 0 0 0 0 0 1117500 687700 429810 0 0 0 7984 275 8302 39833;39834;39835;39836 39811;39812 39811 2 ETAENYLGHTAK YSPSQIGAFVLMKMKETAENYLGHTAKNAV KMKETAENYLGHTAKNAVITVPAYFNDSQR K E T A K N 2 0 1 0 0 0 2 1 1 0 1 1 0 0 0 0 2 0 1 0 0 0 12 0 1332.631 P38646 P38646 176 187 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 3.2154E-06 110.53 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.3838 1.2463 9.2549 5 Median 1.3838 1.3326 NaN 1 0 Median 1.5185 1.2696 2.6199 2 0 Median 1.0015 1.0655 NaN 1 0 Median 1.3277 1.1407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37010000 13848000 23162000 2768000 982800 1785200 32007000 11847000 20161000 1709100 811340 897720 525560 207340 318220 0 0 0 0 0 0 7985 2277 8303 39837;39838;39839;39840;39841 39813;39814;39815;39816 39816 4 ETALLIDPK FAAGAMENWGLVTYRETALLIDPKNSCSSS GLVTYRETALLIDPKNSCSSSRQWVALVVG R E T P K N 1 0 0 1 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 9 0 998.56481 E9PLK3;P55786;A6NEC2;E9PJ74;E9PI82 E9PLK3 324 332 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0048762 59.35 By MS/MS By matching 2 1 1.1143 0.97472 27.712 3 Median 1.0833 1.0698 38.448 2 0 Median 1.1143 0.97472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20844000 10659000 10185000 16505000 8613200 7891400 4339700 2046200 2293500 0 0 0 0 0 0 0 0 0 0 0 0 7986 960 8304 39842;39843;39844 39817;39818 39818 2 ETALLVDR EKRRFTAFKEEYEGKETALLVDRYKFMDLY KEEYEGKETALLVDRYKFMDLYPCSASELK K E T D R Y 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 915.50255 Q12996;E9PLP8 Q12996 520 527 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.052302 34.253 By MS/MS By matching 1 2 1.1023 1.1127 26.928 3 Median NaN NaN NaN 0 0 Median 1.3029 1.1713 NaN 1 0 Median 0.86411 0.89358 31.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29703000 14089000 15614000 0 0 0 1014800 442150 572650 28688000 13647000 15041000 0 0 0 0 0 0 0 0 0 7987 2777 8305 39845;39846;39847 39819 39819 1 ETANAIVSQQTPQR ADQEIPETDWEVYLRETANAIVSQQTPQRL RETANAIVSQQTPQRLLEVRGRLYELLTHC R E T Q R L 2 1 1 0 0 3 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 14 0 1541.7798 P40938;A0A087X270 P40938 257 270 RFC3 Replication factor C subunit 3 yes no 2 5.4319E-08 122.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 0.98739 0.90062 13.771 6 Median 0.87893 0.87314 NaN 1 0 Median 1.227 1.0581 NaN 1 0 Median 0.757 0.78397 9.2298 2 0 Median 1.2006 1.0376 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1092 0.92896 NaN 1 0 Median 21172000 10741000 10431000 4407600 2341100 2066400 2788200 1063500 1724700 9382700 5346000 4036700 2810800 1308500 1502400 0 0 0 1782700 682430 1100300 7988 2294 8306 39848;39849;39850;39851;39852;39853;39854 39820;39821;39822;39823;39824;39825;39826;39827;39828;39829;39830;39831;39832 39828 13 ETASELLMR QEKVDSIDDRHRKNRETASELLMRLKDNRD RHRKNRETASELLMRLKDNRDLQKFLQDCQ R E T M R L 1 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1048.5223 Q01082;A0A087WUZ3 Q01082 1262 1270 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00048284 107.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 4.0709 3.3059 114.04 4 Median NaN NaN NaN 0 0 Median 4.559 3.6359 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.739 2.4195 NaN 1 1 Median 28.293 28.445 NaN 1 1 Median 3.6351 3.0058 NaN 1 1 Median 205020000 17745000 187280000 0 0 0 88393000 9409300 78984000 0 0 0 14380000 2862800 11517000 92935000 4414900 88520000 9312500 1057600 8254900 7989 2681 8307 39855;39856;39857;39858 39833;39834;39835;39836 39835 4 ETAVFINISR ATEGLCNKDFFQKMKETAVFINISRGDVVN FQKMKETAVFINISRGDVVNQDDLYQALAS K E T S R G 1 1 1 0 0 0 1 0 0 2 0 0 0 1 0 1 1 0 0 1 0 0 10 0 1148.619 Q9UBQ7;U3KQ56 Q9UBQ7 236 245 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 2 0.0034408 56.729 By MS/MS 1 1.4855 1.2386 NaN 1 Median NaN NaN NaN 0 0 Median 1.4855 1.2386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4844700 1960200 2884400 0 0 0 4844700 1960200 2884400 0 0 0 0 0 0 0 0 0 0 0 0 7990 4243 8308 39859 39837;39838 39838 2 ETAVPGPLGIEDISPNLSPDDK DFALPSSRGGPGKLRETAVPGPLGIEDISP LGIEDISPNLSPDDKSFSRVVPRVPDSTRR R E T D K S 1 0 1 3 0 0 2 2 0 2 2 1 0 0 4 2 1 0 0 1 0 0 22 0 2263.122 A6NNK5;Q12888 A6NNK5 1368 1389 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 3.1125E-06 39.509 By MS/MS By matching 1 1 0.46279 0.46322 41.526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30984 0.34536 NaN 1 0 Median 0.69125 0.62132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3176300 2221000 955260 0 0 0 0 0 0 2932000 2078400 853580 244290 142620 101680 0 0 0 0 0 0 7991 530 8309 39860;39861 39839;39840 39839 2 ETAVPGPLGIEDISPNLSPDDKSFSR DFALPSSRGGPGKLRETAVPGPLGIEDISP DISPNLSPDDKSFSRVVPRVPDSTRRTDVG R E T S R V 1 1 1 3 0 0 2 2 0 2 2 1 0 1 4 4 1 0 0 1 0 0 26 1 2740.3556 A6NNK5;Q12888 A6NNK5 1368 1393 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 1.4799E-10 63.697 By MS/MS 2 0.34048 0.39853 4.2806 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34048 0.39853 4.2806 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8489900 6791700 1698200 0 0 0 0 0 0 8489900 6791700 1698200 0 0 0 0 0 0 0 0 0 7992 530 8310 39862;39863 39841;39842 39841 2 ETCSLWPGQALSLQVEQLLHHR PAASGPAAIREGWFRETCSLWPGQALSLQV GQALSLQVEQLLHHRRSRYQDILVFRSKTY R E T H R R 1 1 0 0 1 3 2 1 2 0 5 0 0 0 1 2 1 1 0 1 0 0 22 0 2601.3122 P19623;K7EKM4 P19623 23 44 SRM Spermidine synthase yes no 4 1.9105E-09 55.383 By MS/MS 1 0.85882 0.72107 NaN 1 Median NaN NaN NaN 0 0 Median 0.85882 0.72107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2454200 1167200 1287000 0 0 0 2454200 1167200 1287000 0 0 0 0 0 0 0 0 0 0 0 0 7993 2068 8311 39864 39843;39844 39843 2 ETDAHLANPVLPDEVLQEAVPGSIR YRRLVEGLREASAARETDAHLANPVLPDEV LPDEVLQEAVPGSIRTAEHFLGFLRRLLEY R E T I R T 3 1 1 2 0 1 3 1 1 1 3 0 0 0 3 1 1 0 0 3 0 0 25 0 2669.3661 P18074;E7EVE9;A8MX75;K7EKF3 P18074 300 324 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 4.3562E-13 59.429 By MS/MS By MS/MS By matching 2 1 1 0.67141 0.65886 16.7 4 Median 0.67141 0.66231 7.5058 2 2 Median NaN NaN NaN 0 0 Median 0.46847 0.4878 NaN 1 0 Median 0.83924 0.69116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10159000 5988900 4169700 4375100 2467800 1907300 0 0 0 5679500 3472800 2206700 104010 48314 55692 0 0 0 0 0 0 7994 2053 8312 39865;39866;39867;39868 39845;39846;39847;39848 39847 4 ETDDTLVLSFVGQTR PGIKGLWPLRSDPNRETDDTLVLSFVGQTR ETDDTLVLSFVGQTRVLMLNGEEVEETELM R E T T R V 0 1 0 2 0 1 1 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 15 0 1679.8366 Q16531;F5GY55 Q16531 420 434 DDB1 DNA damage-binding protein 1 yes no 2 0.0018004 38.634 By MS/MS By matching By MS/MS 1 1 1 0.81876 0.80499 34.423 3 Median 0.46377 0.46995 NaN 1 0 Median 0.93282 0.80499 NaN 1 0 Median 0.81876 0.89205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5235200 3535200 1700100 2750900 2130600 620390 711940 380160 331770 1772300 1024400 747900 0 0 0 0 0 0 0 0 0 7995 2985 8313 39869;39870;39871 39849;39850;39851 39850 3 ETDKNISEAFEDLSK VGIVGIERKLEEKRKETDKNISEAFEDLSK ETDKNISEAFEDLSKLMIKAKEMVELSKSI K E T S K L 1 0 1 2 0 0 3 0 0 1 1 2 0 1 0 2 1 0 0 0 0 0 15 1 1724.8105 Q86VN1;A0A3B3ISW7 Q86VN1 169 183 VPS36 Vacuolar protein-sorting-associated protein 36 yes no 3 0.0036097 29.341 By MS/MS 1 0.78609 0.85662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78609 0.85662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2656500 1297300 1359200 0 0 0 0 0 0 2656500 1297300 1359200 0 0 0 0 0 0 0 0 0 7996 3287 8314 39872 39852 39852 1 ETDVVLKVDAQEAK AERPEEQAEASGLKKETDVVLKVDAQEAKT KETDVVLKVDAQEAKTEPFTQGKVVGQTTP K E T A K T 2 0 0 2 0 1 2 0 0 0 1 2 0 0 0 0 1 0 0 3 0 0 14 1 1543.8094 Q02952 Q02952 1089 1102 AKAP12 A-kinase anchor protein 12 yes yes 2;3 3.0668E-05 93.258 By MS/MS By matching 2 1 1.2118 1.3206 21.364 3 Median 1.4537 1.5842 25.744 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1077 1.3053 NaN 1 0 Median NaN NaN NaN 0 0 Median 33206000 12656000 20550000 15816000 4921100 10895000 0 0 0 0 0 0 0 0 0 17390000 7735400 9654700 0 0 0 7997 2705 8315 39873;39874;39875 39853;39854 39853 2 ETDYPAGEDLSESGQVDK CNSHVLCIASVPGARETDYPAGEDLSESGQ YPAGEDLSESGQVDKASLCGSMTSNSSAET R E T D K A 1 0 0 3 0 1 3 2 0 0 1 1 0 0 1 2 1 0 1 1 0 0 18 0 1938.8331 A0A087X2D8;O60271;H0YBS5 A0A087X2D8 794 811 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 5.4528E-14 116.19 By MS/MS By MS/MS 2 1 0.90187 0.8667 9.0365 3 Median 0.87055 0.85422 2.0511 2 0 Median 1.1228 0.99692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29768000 14883000 14885000 16631000 8984300 7647100 13137000 5899000 7237800 0 0 0 0 0 0 0 0 0 0 0 0 7998 134 8316 39876;39877;39878 39855;39856;39857;39858;39859 39858 5 ETEATNAILMEQIK SSTTKSADHLNGLLRETEATNAILMEQIKL RETEATNAILMEQIKLLKSEIRRLERNQER R E T I K L 2 0 1 0 0 1 3 0 0 2 1 1 1 0 0 0 2 0 0 0 0 0 14 0 1589.7971 Q8IWJ2 Q8IWJ2 1581 1594 GCC2 GRIP and coiled-coil domain-containing protein 2 yes yes 2 0.055752 23.749 By MS/MS By matching By matching 1 1 1 0.82704 0.79435 4.7506 3 Median 0.82704 0.79435 NaN 1 0 Median 0.95896 0.83455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73844 0.75892 NaN 1 0 Median NaN NaN NaN 0 0 Median 7274600 3807800 3466800 5001800 2543400 2458400 972400 500940 471460 0 0 0 0 0 0 1300400 763480 536950 0 0 0 7999 3326 8317 39879;39880;39881 39860 39860 1 ETEELHHDRVTLEVGK NKQHSITKNTAKLDRETEELHHDRVTLEVG TEELHHDRVTLEVGKVIQQGRQSKGLTQKD R E T G K V 0 1 0 1 0 0 4 1 2 0 2 1 0 0 0 0 2 0 0 2 0 0 16 1 1890.9436 O60869 O60869 64 79 EDF1 Endothelial differentiation-related factor 1 yes yes 3;4 0.019465 20.179 By matching By MS/MS 1 2 1.0354 0.93863 7.6712 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0147 1.0576 NaN 1 0 Median 1.0478 0.92751 1.6848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14349000 6952000 7396700 0 0 0 0 0 0 3445500 1642600 1802900 10903000 5309400 5593800 0 0 0 0 0 0 8000 1635 8318 39882;39883;39884 39861;39862;39863 39861 3 ETEGDVTSVK GISSSSVLHGMVFKKETEGDVTSVKDAKIA MVFKKETEGDVTSVKDAKIAVYSCPFDGMI K E T V K D 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 1 2 0 0 2 0 0 10 0 1063.5033 P50990 P50990 226 235 CCT8 T-complex protein 1 subunit theta yes yes 2 0.0037749 55.549 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1088 0.99743 15.494 5 Median 1.1088 1.0721 NaN 1 0 Median 1.1084 0.94952 6.9626 2 0 Median 1.2162 1.2158 NaN 1 0 Median 0.9245 0.81229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10245000 4901200 5344000 1904700 831820 1072800 7702100 3740400 3961700 484340 236090 248250 154080 92958 61127 0 0 0 0 0 0 8001 2423 8319 39885;39886;39887;39888;39889 39864;39865;39866;39867 39867 4 ETEGDVTSVKDAK GISSSSVLHGMVFKKETEGDVTSVKDAKIA KKETEGDVTSVKDAKIAVYSCPFDGMITET K E T A K I 1 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 2 0 0 2 0 0 13 1 1377.6624 P50990 P50990 226 238 CCT8 T-complex protein 1 subunit theta yes yes 3 0.041238 18.457 By MS/MS 2 1.267 1.2224 19.231 2 Median 1.267 1.2224 19.231 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1796400 799030 997350 1796400 799030 997350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8002 2423 8320 39890;39891 39868;39869 39868 2 ETEGGTVLTATTSELEAINKR RKRLDQVEQELNELRETEGGTVLTATTSEL VLTATTSELEAINKRVKDTMARSEDLDNSI R E T K R V 2 1 1 0 0 0 4 2 0 1 2 1 0 0 0 1 5 0 0 1 0 0 21 1 2219.1281 Q9UQE7 Q9UQE7 852 872 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 7.5409E-12 69.122 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 0.88663 0.86681 12.192 6 Median NaN NaN NaN 0 0 Median 0.82372 0.7861 NaN 1 0 Median 0.69439 0.78677 NaN 1 1 Median 1.0591 1.0178 NaN 1 0 Median 0.89233 1.0103 NaN 1 0 Median 0.96156 0.86681 9.2079 2 0 Median 16458000 8976600 7481200 0 0 0 1149000 580760 568250 7795200 4259400 3535800 781640 353190 428450 6006100 3429500 2576600 725780 353740 372040 8003 4362 8321 39892;39893;39894;39895;39896;39897 39870;39871 39871 2 ETEISLK NHEASTKKKPSSEERETEISLKDSTLDN__ KKPSSEERETEISLKDSTLDN_________ R E T L K D 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 7 0 818.43855 O75475 O75475 518 524 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.039363 45.394 By MS/MS 1 0.83897 0.85395 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83897 0.85395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10238000 5315000 4923400 0 0 0 0 0 0 10238000 5315000 4923400 0 0 0 0 0 0 0 0 0 8004 1674 8322 39898 39872 39872 1 ETEISLKDSTLDN NHEASTKKKPSSEERETEISLKDSTLDN__ ERETEISLKDSTLDN_______________ R E T D N - 0 0 1 2 0 0 2 0 0 1 2 1 0 0 0 2 2 0 0 0 0 0 13 1 1463.6991 O75475 O75475 518 530 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.005905 56.916 By MS/MS 1 0.81845 0.83105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81845 0.83105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10834000 5467500 5366700 0 0 0 0 0 0 10834000 5467500 5366700 0 0 0 0 0 0 0 0 0 8005 1674 8323 39899 39873 39873 1 ETELELR EAMNEMNDELQENARETELELREQLDMAGA DELQENARETELELREQLDMAGARVREAQK R E T L R E 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 888.45526 E7EX90;Q14203;Q6AWB1 E7EX90 463 469 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.010865 81.297 By MS/MS By matching 2 1 0.98003 0.96821 30.982 3 Median NaN NaN NaN 0 0 Median 0.98653 0.86232 42.783 2 0 Median 0.98003 0.96821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17911000 7618100 10293000 0 0 0 15405000 6526300 8879100 2506000 1091800 1414200 0 0 0 0 0 0 0 0 0 8006 906 8324 39900;39901;39902 39874 39874 1 ETENDDLTNVIQK PFIRPVMQALLHIIRETENDDLTNVIQKMI IRETENDDLTNVIQKMICEYSEEVTPIAVE R E T Q K M 0 0 2 2 0 1 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1517.7209 O95373 O95373 552 564 IPO7 Importin-7 yes yes 2 0.001195 57.785 By matching By MS/MS 1 2 0.92629 0.99212 9.9254 3 Median 0.89049 0.85545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9311 1.0123 2.8461 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47026000 18666000 28360000 34495000 12531000 21964000 0 0 0 12531000 6134500 6396000 0 0 0 0 0 0 0 0 0 8007 1768 8325 39903;39904;39905 39875 39875 1 ETENDDVTNVIQK PHVRPIMQELLHIVRETENDDVTNVIQKMI VRETENDDVTNVIQKMICEYSQEVASIAVD R E T Q K M 0 0 2 2 0 1 2 0 0 1 0 1 0 0 0 0 2 0 0 2 0 0 13 0 1503.7053 O15397 O15397 553 565 IPO8 Importin-8 yes yes 2 8.9483E-05 85.377 By MS/MS By matching 1 1 1.318 1.3532 37.714 2 Median 1.0551 1.0365 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6464 1.7668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6263700 2750800 3512900 3968800 1927700 2041100 0 0 0 2294900 823120 1471800 0 0 0 0 0 0 0 0 0 8008 1545 8326 39906;39907 39876;39877 39877 2 ETFASTASQLHSNVVNYVQQIVAPK HAMMGGSEVAQTLAKETFASTASQLHSNVV HSNVVNYVQQIVAPKGS_____________ K E T P K G 3 0 2 0 0 3 1 0 1 1 1 1 0 1 1 3 2 0 1 4 0 0 25 0 2730.3977 Q9H4A4;A6NKB8 Q9H4A4 624 648 RNPEP Aminopeptidase B yes no 3 1.9497E-13 61.222 By MS/MS By MS/MS 1 1 0.94193 0.8431 1.187 2 Median 0.87455 0.83605 NaN 1 0 Median 1.0145 0.8502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15755000 7266100 8489300 5388200 2831400 2556800 10367000 4434800 5932500 0 0 0 0 0 0 0 0 0 0 0 0 8009 3964 8327 39908;39909 39878;39879;39880 39879 3 ETFGVNNAVYGIDAMNPSSR RLKKLQEESDLELAKETFGVNNAVYGIDAM NNAVYGIDAMNPSSRDDFTEFGKLLKDKIT K E T S R D 2 1 3 1 0 0 1 2 0 1 0 0 1 1 1 2 1 0 1 2 0 0 20 0 2140.9848 O75822;H0YGJ7 O75822 134 153 EIF3J Eukaryotic translation initiation factor 3 subunit J yes no 2 6.7526E-07 63.894 By MS/MS 1 0.85377 0.80902 NaN 1 Median 0.85377 0.80902 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4836000 2597800 2238200 4836000 2597800 2238200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8010 1698 8328 39910 39881 39881 1 ETFHLVSK FYQPYSEDTQQQIIRETFHLVSKRDENVCN TQQQIIRETFHLVSKRDENVCNFLEGGLLI R E T S K R 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 1 0 0 8 0 959.50763 Q92572;F5H459 Q92572 34 41 AP3S1 AP-3 complex subunit sigma-1 yes no 2 0.027608 41.029 By matching By MS/MS 1 1 1.2639 1.1448 2.4424 2 Median 1.1894 1.1252 NaN 1 0 Median 1.343 1.1647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4653700 2066600 2587200 3170500 1516300 1654200 1483300 550250 933000 0 0 0 0 0 0 0 0 0 0 0 0 8011 3537 8329 39911;39912 39882 39882 1 ETFIDSGVMSAIK LLPAVVMHLKKQDLKETFIDSGVMSAIKEW LKETFIDSGVMSAIKEWLSPLPDRSLPALK K E T I K E 1 0 0 1 0 0 1 1 0 2 0 1 1 1 0 2 1 0 0 1 0 0 13 0 1396.6908 Q96ST2 Q96ST2 605 617 IWS1 Protein IWS1 homolog yes yes 2 0.0033589 60.434 By MS/MS 1 1.0484 1.153 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0484 1.153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6158900 3066900 3092000 0 0 0 0 0 0 6158900 3066900 3092000 0 0 0 0 0 0 0 0 0 8012 3736 8330 39913 39883 39883 1 ETFLTSPEELYR RPVGVKIPTCKITLKETFLTSPEELYRVFT TLKETFLTSPEELYRVFTTQELVQAFTHAP K E T Y R V 0 1 0 0 0 0 3 0 0 0 2 0 0 1 1 1 2 0 1 0 0 0 12 0 1483.7195 O95433;G3V438;H0YJG7;H0YJ63 O95433 213 224 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.00020783 85.377 By matching By MS/MS By MS/MS 1 2 1 1.1844 1.1406 25.272 4 Median 1.3052 1.2997 NaN 1 0 Median 1.0282 0.87862 18.436 2 0 Median 1.2093 1.3138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12248000 5542100 6706100 1491800 684120 807640 3166200 1489200 1676900 7590300 3368700 4221500 0 0 0 0 0 0 0 0 0 8013 1773 8331 39914;39915;39916;39917 39884;39885;39886 39884 3 ETFNHLTSWLEDAR RGAAGALLVYDITRRETFNHLTSWLEDARQ RETFNHLTSWLEDARQHSSSNMVIMLIGNK R E T A R Q 1 1 1 1 0 0 2 0 1 0 2 0 0 1 0 1 2 1 0 0 0 0 14 0 1717.806 Q8WUD1;A0A3B3ITL1 Q8WUD1 92 105 RAB2B Ras-related protein Rab-2B yes no 3 0.057 11.915 By MS/MS 2 0.78929 0.7607 33.101 2 Median 0.78929 0.7607 33.101 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1777500 930610 846870 1777500 930610 846870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8014 3489 8332 39918;39919 39887 39887 1 ETFQVLNMYGK QLDPQTVGVIVRLERETFQVLNMYGKVVTV RLERETFQVLNMYGKVVTVRHQAVTRKKDN R E T G K V 0 0 1 0 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 1 0 0 11 0 1328.6435 O00267 O00267 556 566 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.029153 49.418 By MS/MS 1 0.75237 0.81415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75237 0.81415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5398000 3211000 2187000 0 0 0 0 0 0 5398000 3211000 2187000 0 0 0 0 0 0 0 0 0 8015 1452 8333 39920 39888 39888 1 ETFSSAEGTVDKDTTIMELR SQEGSSDDAERKQERETFSSAEGTVDKDTT AEGTVDKDTTIMELRDRLPKKQQASASTDG R E T L R D 1 1 0 2 0 0 3 1 0 1 1 1 1 1 0 2 4 0 0 1 0 0 20 1 2229.0471 P46100;A0A096LNW1;A0A096LNL9 P46100 886 905 ATRX Transcriptional regulator ATRX yes no 3 1.4787E-07 58.49 By MS/MS 2 0.83595 0.93437 3.8279 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83595 0.93437 3.8279 2 1 Median NaN NaN NaN 0 0 Median 9184200 4970300 4213900 0 0 0 0 0 0 0 0 0 0 0 0 9184200 4970300 4213900 0 0 0 8016 2339 8334 39921;39922 39889;39890;39891 39890 3 ETFWAEQVTEVK QAYSAKILPSLLQNRETFWAEQVTEVKILE QNRETFWAEQVTEVKILEEKSRQCGMKLQS R E T V K I 1 0 0 0 0 1 3 0 0 0 0 1 0 1 0 0 2 1 0 2 0 0 12 0 1465.7089 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4809 4820 SYNE2 Nesprin-2 yes no 2 0.00038449 96.143 By MS/MS 1 1.1793 1.2654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1793 1.2654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6844200 3780600 3063600 0 0 0 0 0 0 6844200 3780600 3063600 0 0 0 0 0 0 0 0 0 8017 3521 8335 39923 39892 39892 1 ETFYVGAAK KEEIRKEWMFKLVGKETFYVGAAKTKATIN FKLVGKETFYVGAAKTKATINIDAISGFAY K E T A K T 2 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 1 1 0 0 9 0 984.49165 C9JDZ2;Q9NVQ4 C9JDZ2 52 60 FAIM Fas apoptotic inhibitory molecule 1 yes no 2 0.0060753 55.676 By MS/MS 1 0.90333 0.78207 NaN 1 Median NaN NaN NaN 0 0 Median 0.90333 0.78207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1702900 758000 944910 0 0 0 1702900 758000 944910 0 0 0 0 0 0 0 0 0 0 0 0 8018 691 8336 39924 39893 39893 1 ETGANLAICQWGFDDEANHLLLQNNLPAVR KYEKEKFEEMIQQIKETGANLAICQWGFDD EANHLLLQNNLPAVRWVGGPEIELIAIATG K E T V R W 4 1 4 2 1 2 2 2 1 1 5 0 0 1 1 0 1 1 0 1 0 0 30 0 3378.6415 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 294 323 CCT5 T-complex protein 1 subunit epsilon yes no 3 0.0049915 22.723 By MS/MS 1 0.763 0.6625 NaN 1 Median NaN NaN NaN 0 0 Median 0.763 0.6625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 971150 406350 564800 0 0 0 971150 406350 564800 0 0 0 0 0 0 0 0 0 0 0 0 8019 2364 8337 39925 39894;39895 39894 2 ETGEHLVHVK KRLRNGHVGISFVPKETGEHLVHVKKNGQH SFVPKETGEHLVHVKKNGQHVASSPIPVVI K E T V K K 0 0 0 0 0 0 2 1 2 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1147.5986 P21333;Q60FE5 P21333 2015 2024 FLNA Filamin-A no no 2 6.2523E-07 157.68 By matching By MS/MS By matching By matching 1 3 1 1 0.9785 0.89784 21.472 6 Median 0.89907 0.89142 NaN 1 0 Median 0.97533 0.85493 8.2475 3 0 Median NaN NaN NaN 0 0 Median 0.98167 0.90432 NaN 1 0 Median 1.4286 1.4733 NaN 1 0 Median NaN NaN NaN 0 0 Median 8009300 4004100 4005200 377100 221550 155550 6786500 3455400 3331100 0 0 0 260420 124990 135430 585320 202180 383140 0 0 0 8020 2088;3120 8338 39926;39927;39928;39929;39930;39931 39896;39897;39898;39899;39900;39901 39896 6 ETGERPSNEEIMR GSATKDFSVFFQKIRETGERPSNEEIMRFS IRETGERPSNEEIMRFSKLFEDELTLDNLT R E T M R F 0 2 1 0 0 0 4 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 13 1 1546.7046 O95202 O95202 295 307 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2;3 0.00029723 62.14 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.2222 1.2541 16.307 6 Median 0.91517 0.93832 NaN 1 0 Median 1.2414 1.2282 15.512 3 0 Median 1.1476 1.2806 NaN 1 0 Median 1.5266 1.3527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14566000 6763900 7801700 3609700 1878100 1731600 7452700 3150400 4302300 2878700 1481500 1397200 624490 253900 370590 0 0 0 0 0 0 8021 1754 8339 39932;39933;39934;39935;39936;39937 39902;39903;39904;39905;39906;39907;39908 39906 7 ETGGAEGTGDAVLGEK ______________________________ TGGAEGTGDAVLGEKVLEEALLSREHVLEL R E T E K V 2 0 0 1 0 0 3 5 0 0 1 1 0 0 0 0 2 0 0 1 0 0 16 0 1489.6896 I3L0W0;Q92667 I3L0W0 12 27 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 2 0.00014009 62.338 By MS/MS 1 1.3279 1.1533 NaN 1 Median NaN NaN NaN 0 0 Median 1.3279 1.1533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3119300 1395400 1723900 0 0 0 3119300 1395400 1723900 0 0 0 0 0 0 0 0 0 0 0 0 8022 1275 8340 39938 39909 39909 1 ETGGTYHVILDESHYK IGLSAEVRVCTVLARETGGTYHVILDESHY TGGTYHVILDESHYKELLTHHLSPPPASSS R E T Y K E 0 0 0 1 0 0 2 2 2 1 1 1 0 0 0 1 2 0 2 1 0 0 16 0 1847.869 D6RID8;Q6P1K8;Q13888 D6RID8 197 212 GTF2H2C;GTF2H2 General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2;3;4 2.052E-59 237.37 By MS/MS By matching 3 1 0.95934 0.99144 19.916 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93464 0.96461 3.8807 2 0 Median 0.81296 0.68544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85443000 42401000 43042000 0 0 0 0 0 0 84423000 42004000 42419000 1019700 397090 622570 0 0 0 0 0 0 8023 827 8341 39939;39940;39941;39942 39910;39911;39912;39913;39914 39914 5 ETGLMYSIMVHALR FRLTRQFINLMLPMKETGLMYSIMVHALRA KETGLMYSIMVHALRAFRSDPGLLTNTMDV K E T L R A 1 1 0 0 0 0 1 1 1 1 2 0 2 0 0 1 1 0 1 1 0 0 14 0 1619.8164 P78527;H0YG84 P78527 3976 3989 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2;3 6.6868E-06 93.096 By MS/MS By MS/MS By matching 1 3 1 1.1684 1.0363 49.08 5 Median 1.0259 1.0298 NaN 1 0 Median 1.1684 1.0363 39.893 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.424 2.4959 NaN 1 0 Median NaN NaN NaN 0 0 Median 10564000 4522700 6040900 4522500 2210000 2312500 4213600 1811100 2402500 0 0 0 0 0 0 1827500 501640 1325900 0 0 0 8024 2647 8342 39943;39944;39945;39946;39947 39915;39916;39917;39918 39917 4 ETGNINTSLLTLGK SERTMKTQNEGERLRETGNINTSLLTLGKC RETGNINTSLLTLGKCINVLKNSEKSKFQQ R E T G K C 0 0 2 0 0 0 1 2 0 1 3 1 0 0 0 1 3 0 0 0 0 0 14 0 1459.7882 Q96Q89 Q96Q89 399 412 KIF20B Kinesin-like protein KIF20B yes yes 2 0.0031055 39.266 By MS/MS 1 0.99065 1.1041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99065 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3840500 2001700 1838800 0 0 0 0 0 0 3840500 2001700 1838800 0 0 0 0 0 0 0 0 0 8025 3717 8343 39948 39919;39920 39919 2 ETGQQIGDEVR MNKHGICVVDDFLGKETGQQIGDEVRALHD FLGKETGQQIGDEVRALHDTGKFTDGQLVS K E T V R A 0 1 0 1 0 2 2 2 0 1 0 0 0 0 0 0 1 0 0 1 0 0 11 0 1230.584 Q9GZT9;A0A590UJ78 Q9GZT9 217 227 EGLN1 Egl nine homolog 1 yes no 2 0.057313 44.203 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8026 3917 8344 39949 39921 39921 1 ETGVDLTK FDQALLRHIVKEFKRETGVDLTKDNMALQR IVKEFKRETGVDLTKDNMALQRVREAAEKA R E T T K D 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 8 0 861.44436 P38646;A0A3B3ITN1 P38646 293 300 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0035153 91.516 By matching By MS/MS By matching 1 1 1 1.219 1.272 7.6431 3 Median 1.1714 1.1254 NaN 1 0 Median 1.5242 1.272 NaN 1 0 Median 1.219 1.2951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29010000 11489000 17521000 3772600 1598900 2173700 22618000 8712800 13905000 2619600 1177300 1442300 0 0 0 0 0 0 0 0 0 8027 2277 8345 39950;39951;39952 39922;39923 39922 2 ETGVDLTKDNMALQR FDQALLRHIVKEFKRETGVDLTKDNMALQR ETGVDLTKDNMALQRVREAAEKAKCELSSS R E T Q R V 1 1 1 2 0 1 1 1 0 0 2 1 1 0 0 0 2 0 0 1 0 0 15 1 1689.8356 P38646;A0A3B3ITN1 P38646 293 307 HSPA9 Stress-70 protein, mitochondrial yes no 2;3 2.4734E-08 120.96 By MS/MS By matching By matching By matching 4 1 1 2 1.1398 1.1149 18.102 8 Median 1.1398 1.1548 13.351 4 0 Median 1.1167 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3418 1.4755 NaN 1 0 Median 1.0952 0.9603 20.491 2 0 Median 239940000 109850000 130090000 231510000 106300000 125210000 1513800 784120 729680 0 0 0 0 0 0 5353600 2039500 3314100 1563700 727330 836400 8028 2277 8346 39953;39954;39955;39956;39957;39958;39959;39960 39924;39925;39926;39927;39928;39929;39930 39929 7 ETGVPIAGR CFIPCTPKGCLELIKETGVPIAGRHAVVVG CLELIKETGVPIAGRHAVVVGRSKIVGAPM K E T G R H 1 1 0 0 0 0 1 2 0 1 0 0 0 0 1 0 1 0 0 1 0 0 9 0 898.48723 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 158 166 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0039761 62.107 By MS/MS By MS/MS 1 2 1.0164 0.84651 5.2213 3 Plateau 0.77934 0.76881 NaN 1 0 Median 0.99063 0.84097 0.92849 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23498000 12302000 11196000 2160800 1391700 769020 21337000 10910000 10427000 0 0 0 0 0 0 0 0 0 0 0 0 8029 1968 8347 39961;39962;39963 39931;39932;39933 39932 3 ETGYTYILPK HLRTNHIYVSSDDIKETGYTYILPKNVLKK SDDIKETGYTYILPKNVLKKFICISDLRAQ K E T P K N 0 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 2 0 2 0 0 0 10 0 1183.6125 Q6P2Q9 Q6P2Q9 2099 2108 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.032874 33.263 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.064 0.94518 6.7136 5 Median NaN NaN NaN 0 0 Median 1.064 0.94518 NaN 1 0 Median 0.82004 0.90446 NaN 1 0 Median 1.1319 1.0258 NaN 1 0 Median 0.84122 0.88037 NaN 1 0 Median 1.1805 1.0114 NaN 1 0 Median 31274000 15915000 15358000 0 0 0 3060300 1697300 1363000 13789000 7065400 6723300 1821500 836180 985280 8900900 4642900 4258000 3702400 1673600 2028800 8030 3157 8348 39964;39965;39966;39967;39968 39934;39935;39936 39934 3 ETHMMGNEEETEFHGLR QEKMVYIYHSLKNSRETHMMGNEEETEFHG HMMGNEEETEFHGLRFPLSHLDALKQIWNS R E T L R F 0 1 1 0 0 0 5 2 2 0 1 0 2 1 0 0 2 0 0 0 0 0 17 0 2045.8571 Q8IUF8 Q8IUF8 402 418 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 3;4 5.5365E-06 66.387 By MS/MS By MS/MS 2 2 1.1807 1.0171 23.476 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.172 1.1652 37.336 2 0 Median 1.1807 1.0171 8.6369 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18809000 8287300 10522000 0 0 0 0 0 0 15456000 6581100 8874900 3353000 1706200 1646800 0 0 0 0 0 0 8031 3313 8349 39969;39970;39971;39972 39937;39938;39939 39937 2 ETHSLFFR SGPRTLVLLDNLNVRETHSLFFRSLKDRGF LDNLNVRETHSLFFRSLKDRGFELTFKTAD R E T F R S 0 1 0 0 0 0 1 0 1 0 1 0 0 2 0 1 1 0 0 0 0 0 8 0 1035.5138 P39656;A0A0C4DGS1;U3KQ84 P39656 58 65 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 0.0086408 79.597 By MS/MS By MS/MS By MS/MS 1 1 1 1.1351 1.1984 11.658 3 Plateau 0.98804 0.98638 NaN 1 1 Median 1.3257 1.1563 NaN 1 0 Median 1.1351 1.238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40567000 19369000 21198000 16222000 7978100 8244100 12138000 5540100 6597800 12207000 5850400 6356400 0 0 0 0 0 0 0 0 0 8032 253 8350 39973;39974;39975 39940;39941;39942 39940 3 ETIDAVPNAIPGR YTGPGLAIHCMQVHKETIDAVPNAIPGRTD HKETIDAVPNAIPGRTDIELEIYGMEGIPE K E T G R T 2 1 1 1 0 0 1 1 0 2 0 0 0 0 2 0 1 0 0 1 0 0 13 0 1351.7096 J3QRS9;X6R4W8;O43670;J3QS27;J3KTL1;J3KRB6;J3KRW6;H0Y3M2 J3QRS9 60 72 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 2 5.7858E-05 150.85 By MS/MS By MS/MS 2 3 0.58173 0.56643 22.933 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63083 0.62672 14.305 2 0 Median 0.58173 0.48093 28.707 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 148060000 89185000 58880000 0 0 0 0 0 0 131080000 79167000 51913000 16985000 10018000 6967100 0 0 0 0 0 0 8033 1353 8351 39976;39977;39978;39979;39980 39943;39944;39945;39946;39947;39948 39945 6 ETIEDVEEMLNNLPGVTSVHSR IGALKLNIGDLQVTKETIEDVEEMLNNLPG EMLNNLPGVTSVHSRFYDLSSKYYQTIGNH K E T S R F 0 1 2 1 0 0 4 1 1 1 2 0 1 0 1 2 2 0 0 3 0 0 22 0 2468.1853 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 133 154 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 3 2.4318E-23 102.43 By MS/MS By matching 1 1 1.0283 0.99995 13.667 2 Median NaN NaN NaN 0 0 Median 1.0404 0.90784 NaN 1 0 Median 1.0163 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15246000 7114300 8131600 0 0 0 9774000 4560100 5213900 5471900 2554200 2917700 0 0 0 0 0 0 0 0 0 8034 4345 8352 39981;39982 39949 39949 1 ETIELVHTEPTDVAQLPSR QKMVNYIQMKLDLERETIELVHTEPTDVAQ LVHTEPTDVAQLPSRVPRDAARYHFFLYKH R E T S R V 1 1 0 1 0 1 3 0 1 1 2 0 0 0 2 1 3 0 0 2 0 0 19 0 2134.0906 Q6IBS0;D6RG15;H0Y858 Q6IBS0 210 228 TWF2 Twinfilin-2 yes no 3 2.2003E-07 65.951 By matching By MS/MS 1 2 0.55654 0.47912 20.525 3 Median NaN NaN NaN 0 0 Median 0.55654 0.47912 NaN 1 0 Median 0.54837 0.56752 25.522 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24702000 16649000 8053500 0 0 0 2487900 2063100 424840 22214000 14586000 7628700 0 0 0 0 0 0 0 0 0 8035 3138 8353 39983;39984;39985 39950;39951 39950 2 ETIPLQETSLYTQDR VDSEWFGFYRSGQAKETIPLQETSLYTQDR ETIPLQETSLYTQDRLGLKEMDNAGQLVFL K E T D R L 0 1 0 1 0 2 2 0 0 1 2 0 0 0 1 1 3 0 1 0 0 0 15 0 1792.8843 A0A2C9F2P4;A0A286YFF7;P50897;E9PIA8;E9PSE5 A0A2C9F2P4 253 267 PPT1 Palmitoyl-protein thioesterase 1 yes no 2 5.196E-10 108.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1.1751 1.098 69.759 7 Median 1.1751 1.098 NaN 1 0 Median 1.3397 1.1146 33.606 3 0 Median 0.4324 0.44045 123.39 2 1 Median 1.4982 1.2553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24188000 11313000 12875000 9076700 3882500 5194200 6930400 2852800 4077600 7186300 4218300 2968000 994260 359300 634960 0 0 0 0 0 0 8036 352 8354 39986;39987;39988;39989;39990;39991;39992 39952;39953;39954;39955;39956 39952 4 ETKPEPMEEDLPENK EEEIATPPPPPPPKKETKPEPMEEDLPENK ETKPEPMEEDLPENKKQALKEKELGNDAYK K E T N K K 0 0 1 1 0 0 5 0 0 0 1 2 1 0 3 0 1 0 0 0 0 0 15 1 1784.8138 P31948;F5H783 P31948 208 222 STIP1 Stress-induced-phosphoprotein 1 yes no 3 2.8246E-05 81.311 By MS/MS By MS/MS By matching 1 1 1 0.75586 0.71076 6.2785 3 Median 0.75586 0.71076 NaN 1 0 Median 0.74494 0.69577 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84776 0.78278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19530000 10956000 8573900 8875600 5306100 3569600 9240200 4750900 4489300 0 0 0 1413800 898700 515070 0 0 0 0 0 0 8037 2212 8355 39993;39994;39995 39957;39958;39959;39960 39960 4 ETKPEPMEEDLPENKK EEEIATPPPPPPPKKETKPEPMEEDLPENK TKPEPMEEDLPENKKQALKEKELGNDAYKK K E T K K Q 0 0 1 1 0 0 5 0 0 0 1 3 1 0 3 0 1 0 0 0 0 0 16 2 1912.9088 P31948;F5H783 P31948 208 223 STIP1 Stress-induced-phosphoprotein 1 yes no 3;4 3.8817E-05 67.415 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 0.68694 0.73221 16.447 8 Median 0.67684 0.69068 8.0327 3 0 Median 0.69719 0.6694 14.175 3 0 Median 0.66451 0.78519 NaN 1 0 Median 1.1959 1.0495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113730000 64833000 48895000 61009000 34597000 26413000 50012000 28999000 21014000 737370 392990 344380 1968900 844080 1124800 0 0 0 0 0 0 8038 2212 8356 39996;39997;39998;39999;40000;40001;40002;40003 39961;39962;39963;39964;39965;39966;39967 39965 7 ETKSEETLDEGPPK SEQVKNVKLNEDKPKETKSEETLDEGPPKY KETKSEETLDEGPPKYTKSVLKKGDKTNFP K E T P K Y 0 0 0 1 0 0 4 1 0 0 1 2 0 0 2 1 2 0 0 0 0 0 14 1 1558.7362 Q00688 Q00688 97 110 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3 0.0051981 32.275 By MS/MS By MS/MS By MS/MS 1 1 2 0.85204 0.75726 14.832 4 Median NaN NaN NaN 0 0 Median 1.1037 1.012 NaN 1 1 Median 0.73176 0.74389 NaN 1 0 Median 0.85204 0.75726 1.1314 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4312600 2194900 2117600 0 0 0 1041700 521700 520020 1261600 770370 491270 2009200 902870 1106300 0 0 0 0 0 0 8039 2677 8357 40004;40005;40006;40007 39968;39969;39970;39971;39972 39972 5 ETKSEETLDEGPPKYTK SEQVKNVKLNEDKPKETKSEETLDEGPPKY KSEETLDEGPPKYTKSVLKKGDKTNFPKKG K E T T K S 0 0 0 1 0 0 4 1 0 0 1 3 0 0 2 1 3 0 1 0 0 0 17 2 1950.9422 Q00688 Q00688 97 113 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3;4 0.0094863 24.041 By MS/MS By MS/MS 2 2 0.80853 0.76695 20.424 4 Median NaN NaN NaN 0 0 Median 0.63521 0.6216 16.767 2 0 Median NaN NaN NaN 0 0 Median 0.92282 0.84852 1.3464 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5504800 2703500 2801400 0 0 0 1652000 955260 696770 0 0 0 3852800 1748200 2104600 0 0 0 0 0 0 8040 2677 8358 40008;40009;40010;40011 39973;39974;39975;39976;39977 39975 5 ETLAQLQQEFQR ESQLRDLERQSEQQRETLAQLQQEFQRAQA QQRETLAQLQQEFQRAQAAKAGAPGKA___ R E T Q R A 1 1 0 0 0 4 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 12 0 1489.7525 O15212 O15212 106 117 PFDN6 Prefoldin subunit 6 yes yes 2 1.5559E-07 123.63 By MS/MS 1 1.4564 1.4766 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4564 1.4766 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7934900 3563300 4371600 0 0 0 0 0 0 7934900 3563300 4371600 0 0 0 0 0 0 0 0 0 8041 1530 8359 40012 39978 39978 1 ETLDQINQELIQAK NTLLNFTDNFDDFRRETLDQINQELIQAKK RETLDQINQELIQAKKLLQDISEARCKGLQ R E T A K K 1 0 1 1 0 3 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 14 0 1641.8574 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1440 1453 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 5.3425E-07 118.4 By MS/MS By matching 1 1 0.97328 0.91276 32.179 2 Median 0.72677 0.72701 NaN 1 0 Median 1.3034 1.146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9415300 5257900 4157300 8376600 4875000 3501600 1038700 382960 655720 0 0 0 0 0 0 0 0 0 0 0 0 8042 189 8360 40013;40014 39979;39980 39979 2 ETLDTMLDGLGR GDKPSISAVTVELSKETLDTMLDGLGRIRD LSKETLDTMLDGLGRIRDQLSAVASK____ K E T G R I 0 1 0 2 0 0 1 2 0 0 3 0 1 0 0 0 2 0 0 0 0 0 12 0 1319.6391 Q9P000 Q9P000 176 187 COMMD9 COMM domain-containing protein 9 yes yes 2 0.001303 54.608 By MS/MS By MS/MS 1 1 1.1805 1.0772 14.781 2 Median 1.1994 1.1959 NaN 1 0 Median 1.1618 0.97028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2285700 933280 1352400 1583900 628140 955760 701800 305140 396650 0 0 0 0 0 0 0 0 0 0 0 0 8043 4195 8361 40015;40016 39981;39982;39983 39981 3 ETLEEYNKEFAEVK VQRLHDIETENQKLRETLEEYNKEFAEVKN RETLEEYNKEFAEVKNQEVTIKALKEKIRE R E T V K N 1 0 1 0 0 0 5 0 0 0 1 2 0 1 0 0 1 0 1 1 0 0 14 1 1727.8254 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 131 144 CUX1 Protein CASP no no 3 0.03384 19.075 By MS/MS By matching 1 1 0.98522 1.0202 8.4806 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9392 1.0832 NaN 1 0 Median 1.0335 0.96078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4487900 2126200 2361700 0 0 0 0 0 0 4219600 1991800 2227900 268310 134440 133870 0 0 0 0 0 0 8044 388;2847 8362 40017;40018 39984 39984 1 ETLFNTLANNR LEQKKKQRHLLVPERETLFNTLANNREIIN VPERETLFNTLANNREIINQQRKRLNHLVD R E T N R E 1 1 3 0 0 0 1 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 11 0 1291.6521 A0A494C1F2;P35658;A0A0A0MSW3 A0A494C1F2 843 853 NUP214 Nuclear pore complex protein Nup214 yes no 2 4.596E-22 202.28 By matching By MS/MS By matching By MS/MS 1 3 3 1 1.1703 1.084 26.713 7 Median NaN NaN NaN 0 0 Median 0.75046 0.63891 NaN 1 0 Median 0.97104 1.0633 2.7245 2 1 Median 1.4064 1.2194 13.418 3 0 Median 1.3855 1.4535 NaN 1 0 Median NaN NaN NaN 0 0 Median 46353000 22451000 23902000 0 0 0 3656700 2043000 1613700 35693000 17759000 17934000 2923800 1282200 1641600 4079200 1366800 2712400 0 0 0 8045 467 8363 40019;40020;40021;40022;40023;40024;40025;40026 39985;39986;39987;39988;39989 39987 5 ETLGLLR LKRGGGPRSSEEMARETLGLLRQIITDHRW RSSEEMARETLGLLRQIITDHRWSNAGELM R E T L R Q 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 P49770;H0YJJ8;G3V5E5 P49770 37 43 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 2 0.023603 56.51 By MS/MS 1 1.3144 1.3095 NaN 1 Median 1.3144 1.3095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3373700 1539100 1834600 3373700 1539100 1834600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8046 2398 8364 40027 39990 39990 1 ETLGSEAVSSNVIDYGHASK MGRRLPNLPSQSRNKETLGSEAVSSNVIDY EAVSSNVIDYGHASKYGYTEDPLEVRIYDP K E T S K Y 2 0 1 1 0 0 2 2 1 1 1 1 0 0 0 4 1 0 1 2 0 0 20 0 2062.9807 Q14966 Q14966 197 216 ZNF638 Zinc finger protein 638 yes yes 3 0.00021426 34.689 By MS/MS By matching 1 1 0.93514 0.93713 22.333 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71876 0.80024 NaN 1 0 Median 1.2167 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6353100 3437900 2915200 0 0 0 0 0 0 5922600 3244400 2678200 430530 193490 237030 0 0 0 0 0 0 8047 2903 8365 40028;40029 39991 39991 1 ETLIDVAR LQFLEEVKVSREMDRETLIDVARTSLRTKV VSREMDRETLIDVARTSLRTKVHAELADVL R E T A R T 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 0 915.50255 P40227 P40227 146 153 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.022207 56.547 By MS/MS By MS/MS By MS/MS 1 1 1 1.3434 1.2918 20.454 3 Median 1.3434 1.2918 NaN 1 1 Median 1.1775 0.99834 NaN 1 0 Median 1.4367 1.4953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15658000 6683100 8974500 6946600 3210600 3736100 5001800 2039400 2962400 3709100 1433100 2276000 0 0 0 0 0 0 0 0 0 8048 2285 8366 40030;40031;40032 39992;39993;39994 39993 3 ETLLAMFK IIKEKQAFERLEVKKETLLAMFKYNKFKCR ERLEVKKETLLAMFKYNKFKCRILNEKVNT K E T F K Y 1 0 0 0 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 8 0 951.50994 P26639 P26639 224 231 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.060654 32.47 By MS/MS By matching By matching 2 2 1 1.2543 1.2087 8.089 5 Median 1.261 1.2 1.0256 2 0 Median 1.2621 1.1125 12.657 2 0 Median 1.195 1.2435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12486000 5663000 6823100 5397100 2459000 2938100 6399100 2875300 3523700 689950 328630 361310 0 0 0 0 0 0 0 0 0 8049 2147 8367 40033;40034;40035;40036;40037 39995 39995 1 ETLLNGVGYLHEGLSPMER DLIPYLEKLSDSTLKETLLNGVGYLHEGLS NGVGYLHEGLSPMERRLVEQLFSSGAIQVV K E T E R R 0 1 1 0 0 0 3 3 1 0 4 0 1 0 1 1 1 0 1 1 0 0 19 0 2114.0466 O75643 O75643 1611 1629 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 5.0634E-07 59.252 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.89969 0.88339 92.869 4 Median 0.6364 0.64718 157.36 2 0 Median NaN NaN NaN 0 0 Median 0.74278 0.81151 NaN 1 1 Median 1.0898 0.96163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16244000 8782100 7462300 5028900 2665000 2364000 154940 46397 108550 10087000 5615400 4471400 973760 455370 518390 0 0 0 0 0 0 8050 1688 8368 40038;40039;40040;40041;40042 39996;39997;39998;39999;40000 39997 5 ETLLNSATTSLNSK EILTDMSRPVELSDRETLLNSATTSLNSKV RETLLNSATTSLNSKVVSQYSSLLSPMSVN R E T S K V 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 3 3 0 0 0 0 0 14 0 1477.7624 P50991 P50991 161 174 CCT4 T-complex protein 1 subunit delta yes yes 2 7.9049E-12 180.19 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1185 0.94703 13.487 6 Median 0.99681 0.92716 16.407 2 0 Median 1.1256 0.94703 1.6907 2 1 Median 1.2611 1.2198 NaN 1 0 Median 1.0467 0.89745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82873000 38124000 44749000 14839000 7168400 7670400 32159000 15229000 16930000 26916000 11669000 15248000 8959000 4057800 4901200 0 0 0 0 0 0 8051 2424 8369 40043;40044;40045;40046;40047;40048 40001;40002;40003;40004;40005;40006 40002 6 ETLLQSYNKR ______________________________ LPQSKETLLQSYNKRLKDDIKSIMDNFTEI K E T K R L 0 1 1 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 10 1 1250.6619 E9PGW7;Q5T8T7;E7EN96;Q5T8T8;Q15528 E9PGW7 12 21 MED22 Mediator of RNA polymerase II transcription subunit 22 yes no 2;3 0.00052602 81.594 By matching By MS/MS By matching 1 2 1 0.90696 0.89608 13.257 4 Median 0.9367 0.8789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85028 0.88569 4.3866 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4361 1.1459 NaN 1 0 Median 11858000 6239100 5619000 3076800 1640200 1436600 0 0 0 8422000 4447200 3974800 0 0 0 0 0 0 359390 151740 207650 8052 862 8370 40049;40050;40051;40052 40007;40008;40009 40009 3 ETLPAEQDLTTK CNLNELVKHGLRALRETLPAEQDLTTKNVS ALRETLPAEQDLTTKNVSIGIVGKDLEFTI R E T T K N 1 0 0 1 0 1 2 0 0 0 2 1 0 0 1 0 3 0 0 0 0 0 12 0 1344.6773 P25786;F5GX11 P25786 197 208 PSMA1 Proteasome subunit alpha type-1 yes no 2 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.91759 0.79178 114.62 6 Median NaN NaN NaN 0 0 Median 0.97361 0.8138 127.47 3 0 Median 1.0996 1.0348 NaN 1 0 Median 0.23687 0.19873 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76976 0.77035 NaN 1 0 Median 44904000 25438000 19466000 0 0 0 27196000 13251000 13945000 6585200 2972500 3612700 8243400 7366300 877150 0 0 0 2879800 1848700 1031000 8053 2136 8371 40053;40054;40055;40056;40057;40058 40010;40011;40012;40013;40014;40015;40016 40015 7 ETLPNVR DDLTIPRAAINKMIKETLPNVRVANDAREL AAINKMIKETLPNVRVANDARELVVNCCTE K E T V R V 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 7 0 827.45012 Q01658 Q01658 24 30 DR1 Protein Dr1 yes yes 2 0.016999 66.994 By MS/MS By matching 1 2 1.2626 1.0437 10.068 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96835 0.92844 NaN 1 0 Median 1.3398 1.0881 5.8964 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6989900 3147400 3842500 0 0 0 0 0 0 5453900 2482600 2971300 1536000 664770 871250 0 0 0 0 0 0 8054 2689 8372 40059;40060;40061 40017;40018 40018 2 ETLVAVQQLDKNMSSLR QHLLDLIAARVKKLKETLVAVQQLDKNMSS LVAVQQLDKNMSSLRTWLAHIESELAKPIV K E T L R T 1 1 1 1 0 2 1 0 0 0 3 1 1 0 0 2 1 0 0 2 0 0 17 1 1931.0146 A0A0C4DG40;Q8NF91;E7ENN3;Q5JV20;F8WAI0;H0Y326;H0Y325 A0A0C4DG40 7811 7827 SYNE1 Nesprin-1 yes no 3 0.065039 9.788 By MS/MS 1 1.0528 0.98796 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0528 0.98796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51156000 25562000 25594000 0 0 0 0 0 0 0 0 0 51156000 25562000 25594000 0 0 0 0 0 0 8055 233 8373 40062 40019 40019 1 ETLVYLTHLDYVDTER FMKDTDSINLYKNMRETLVYLTHLDYVDTE TLVYLTHLDYVDTERIMTEKLHNQVNGTEW R E T E R I 0 1 0 2 0 0 2 0 1 0 3 0 0 0 0 0 3 0 2 2 0 0 16 0 1965.9684 O14980 O14980 459 474 XPO1 Exportin-1 yes yes 2;3 9.4268E-09 144.47 By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 1 1.2034 1.063 24.589 8 Median 1.0228 0.98566 9.578 2 0 Median 1.2392 1.09 6.6024 2 0 Median 1.1588 1.2428 21.013 2 0 Median 1.1874 1.0113 NaN 1 0 Median 1.8551 1.9638 NaN 1 0 Median NaN NaN NaN 0 0 Median 37400000 18370000 19031000 22858000 11679000 11179000 4070200 1788700 2281500 5693600 2971300 2722300 1901600 908850 992770 2877100 1022200 1855000 0 0 0 8056 1510 8374 40063;40064;40065;40066;40067;40068;40069;40070 40020;40021;40022;40023;40024;40025 40023 6 ETMQSLNDR IAGGLAGMGGIQNEKETMQSLNDRLASYLD GIQNEKETMQSLNDRLASYLDRVRSLETEN K E T D R L 0 1 1 1 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 9 0 1092.487 P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 82 90 KRT18;KRT35 Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5 yes no 2 0.00032593 136.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 3 4 1.2168 1.1718 16.925 19 Median 1.2027 1.1718 18.395 3 0 Median 1.4358 1.2074 15.044 3 0 Median 1.2268 1.2144 10.078 4 0 Median 1.2771 1.114 11.13 2 0 Median 1.2339 1.2466 30.289 3 0 Median 1.1838 0.98983 5.7295 4 0 Median 109220000 45319000 63899000 8273500 3826400 4447100 23191000 8686500 14504000 43052000 18252000 24799000 9776500 4334600 5441900 12912000 5119600 7792800 12013000 5099700 6913500 8057 1869 8375;8376 40071;40072;40073;40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087;40088;40089 40026;40027;40028;40029;40030;40031;40032;40033;40034;40035;40036;40037;40038;40039;40040;40041;40042;40043;40044 40037 620 19 ETMVTSTTEPSR QGPNRSTTVRLLCGKETMVTSTTEPSRCEY CGKETMVTSTTEPSRCEYLMELMTPAACPE K E T S R C 0 1 0 0 0 0 2 0 0 0 0 0 1 0 1 2 4 0 0 1 0 0 12 0 1337.6133 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 495 506 PRKCSH Glucosidase 2 subunit beta yes no 2 3.4285E-06 129.85 By MS/MS By MS/MS 1 2 1.3313 1.1506 32.053 3 Median 1.3853 1.3184 NaN 1 0 Median 1.0215 0.90764 33.549 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30714000 11320000 19394000 10970000 3833600 7136900 19744000 7486300 12257000 0 0 0 0 0 0 0 0 0 0 0 0 8058 1378 8377 40090;40091;40092 40045;40046;40047;40048;40049;40050 40046 6 ETNFQVMQMK CQALVRMLAKKPGWKETNFQVMQMKLHIVA KPGWKETNFQVMQMKLHIVALIAQKGNFSK K E T M K L 0 0 1 0 0 2 1 0 0 0 0 1 2 1 0 0 1 0 0 1 0 0 10 0 1254.5737 Q14008 Q14008 652 661 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00041855 75.38 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1.1715 1.0096 27.801 7 Median 0.93395 0.89718 NaN 1 0 Median 0.983 0.86327 NaN 1 0 Median 1.3882 1.5304 NaN 1 0 Median 1.5814 1.373 33.552 2 0 Median NaN NaN NaN 0 0 Median 1.1287 0.95772 7.4562 2 0 Median 30279000 12759000 17520000 4914100 1941000 2973200 1490700 694200 796500 15897000 6472600 9424900 7022600 3195200 3827500 0 0 0 954230 456480 497750 8059 2850 8378 40093;40094;40095;40096;40097;40098;40099 40051;40052;40053 40053 3 ETNISYSQEADDR TPPSVVNEDFLHDLKETNISYSQEADDRVF LKETNISYSQEADDRVFRAHGHCLHEIFLL K E T D R V 1 1 1 2 0 1 2 0 0 1 0 0 0 0 0 2 1 0 1 0 0 0 13 0 1526.6485 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 170 182 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.00033295 76.655 By MS/MS By MS/MS 1 1 1.1555 0.98437 3.944 2 Median NaN NaN NaN 0 0 Median 1.1662 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1449 0.95729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4257900 1856300 2401600 0 0 0 3168000 1319100 1848900 0 0 0 1089900 537110 552760 0 0 0 0 0 0 8060 1439 8379 40100;40101 40054;40055 40054 2 ETNLDSLPLVDTHSK RISLPLPNFSSLNLRETNLDSLPLVDTHSK ETNLDSLPLVDTHSKRTLLIKTVETRDGQV R E T S K R 0 0 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 15 0 1667.8366 P08670 P08670 425 439 VIM Vimentin yes yes 2;3 6.6985E-10 119.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 5 4 3 1 0.92016 0.84185 29.895 18 Median 0.78874 0.72805 0.053077 2 0 Median 1.4018 1.1948 25.183 3 0 Plateau 0.90289 0.87287 42.915 5 0 Median 0.96205 0.84185 6.0653 4 0 Median 0.79112 0.75686 28.754 3 0 Median 0.78702 0.64573 NaN 1 0 Median 275310000 146910000 128400000 44605000 25484000 19121000 14931000 6474800 8456200 98325000 52444000 45881000 16974000 8446900 8526700 91808000 49277000 42531000 8664600 4782700 3881900 8061 1907 8380 40102;40103;40104;40105;40106;40107;40108;40109;40110;40111;40112;40113;40114;40115;40116;40117;40118;40119 40056;40057;40058;40059;40060;40061;40062;40063;40064;40065;40066;40067;40068;40069;40070;40071;40072;40073;40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087;40088 40070 33 ETNLDSLPLVDTHSKR RISLPLPNFSSLNLRETNLDSLPLVDTHSK TNLDSLPLVDTHSKRTLLIKTVETRDGQVI R E T K R T 0 1 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 16 1 1823.9377 P08670 P08670 425 440 VIM Vimentin yes yes 2;3;4 4.3154E-59 235.73 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 6 4 0.9775 0.96305 34.428 18 Median 0.93834 0.93403 51.561 3 0 Median 1.0387 0.94942 NaN 1 0 Median 1.077 1.1467 3.6706 2 0 Median 1.2363 1.183 0.49683 2 0 Median 0.97029 1.0016 30.693 6 0 Median 0.80012 0.67478 10.782 4 0 Median 385470000 190690000 194780000 89602000 46295000 43307000 1555300 860940 694350 12462000 6217700 6244600 18661000 8635900 10025000 201330000 97334000 104000000 61861000 31350000 30511000 8062 1907 8381 40120;40121;40122;40123;40124;40125;40126;40127;40128;40129;40130;40131;40132;40133;40134;40135;40136;40137 40089;40090;40091;40092;40093;40094;40095;40096;40097;40098;40099;40100;40101;40102;40103;40104;40105;40106;40107;40108;40109;40110;40111;40112;40113;40114;40115;40116;40117 40107 28 ETNNAAIIMK AEDLVEKLRKFRFRKETNNAAIIMKIDKDK FRFRKETNNAAIIMKIDKDKRLVVLDEELE K E T M K I 2 0 2 0 0 0 1 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5645 P60983;G3V4P8 P60983 26 35 GMFB Glia maturation factor beta yes no 2 0.0048213 51.854 By MS/MS By MS/MS 1 1 1.035 0.93413 0.71807 2 Median 0.98316 0.9294 NaN 1 0 Median 1.0896 0.93889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7365500 3618500 3747000 4851900 2413200 2438600 2513600 1205300 1308300 0 0 0 0 0 0 0 0 0 0 0 0 8063 2534 8382 40138;40139 40118;40119;40120 40118 3 ETNPHHPPAWIASAR INDIKKARLLLKSVRETNPHHPPAWIASAR ETNPHHPPAWIASARLEEVTGKLQVARNLI R E T A R L 3 1 1 0 0 0 1 0 2 1 0 0 0 0 3 1 1 1 0 0 0 0 15 0 1682.8277 O94906 O94906 303 317 PRPF6 Pre-mRNA-processing factor 6 yes yes 3;4 8.6968E-05 65.092 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 4 2 2 2 0.71923 0.63942 23.282 12 Median 0.70743 0.697 NaN 1 0 Median 0.76438 0.64371 NaN 1 0 Median 0.6204 0.65962 41.731 4 2 Median 0.77792 0.66003 8.9132 2 0 Median 0.6317 0.66289 11.881 2 0 Median 0.77277 0.6291 1.3531 2 0 Median 73516000 46308000 27209000 2233900 1512100 721770 5803300 3033900 2769300 37775000 25618000 12158000 14178000 8272300 5905200 8382200 4845100 3537100 5144100 3026400 2117700 8064 1735 8383 40140;40141;40142;40143;40144;40145;40146;40147;40148;40149;40150;40151 40121;40122;40123;40124;40125;40126;40127;40128;40129;40130;40131;40132 40127 12 ETPAATEAPSSTPK SDSKPGSSEAAPSSKETPAATEAPSSTPKA KETPAATEAPSSTPKAQGPAASAEEPKPVE K E T P K A 3 0 0 0 0 0 2 0 0 0 0 1 0 0 3 2 3 0 0 0 0 0 14 0 1385.6674 P80723 P80723 185 198 BASP1 Brain acid soluble protein 1 yes yes 2 0.0015468 48.004 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.62291 0.57519 22.909 4 Median 0.63984 0.62026 NaN 1 0 Median 0.8512 0.7347 NaN 1 0 Median 0.42408 0.42842 NaN 1 0 Median 0.60644 0.5334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3535600 2248300 1287400 894370 586760 307610 1340000 804260 535730 998680 678290 320390 302610 178960 123650 0 0 0 0 0 0 8065 2649 8384 40152;40153;40154;40155 40133;40134;40135 40135 3 ETPALTINR IYLARHVGLRVGIPKETPALTINRLCGSGF RVGIPKETPALTINRLCGSGFQSIVNGCQE K E T N R L 1 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 9 0 1013.5506 A0A0B4J2A4;P42765;K7EME0;K7ER88;K7EJB1;K7EJ68 A0A0B4J2A4 79 87 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.004626 75.738 By MS/MS 1 1.1326 0.98855 NaN 1 Median NaN NaN NaN 0 0 Median 1.1326 0.98855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8544100 3579100 4965000 0 0 0 8544100 3579100 4965000 0 0 0 0 0 0 0 0 0 0 0 0 8066 220 8385 40156 40136 40136 1 ETPETFYIGK YRSPNTEEIFNMLTKETPETFYIGKLIICN NMLTKETPETFYIGKLIICNVTGIAHRRPQ K E T G K L 0 0 0 0 0 0 2 1 0 1 0 1 0 1 1 0 2 0 1 0 0 0 10 0 1183.5761 Q7KZ85 Q7KZ85 1156 1165 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0066695 48.794 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.89739 0.79571 26.937 5 Median NaN NaN NaN 0 0 Median 0.89739 0.79571 NaN 1 0 Median 0.4891 0.58776 NaN 1 0 Median 0.97785 0.8903 NaN 1 0 Median 1.1745 1.2325 NaN 1 0 Median 0.88087 0.75843 NaN 1 0 Median 14119000 8891400 5227900 0 0 0 2533300 1258900 1274400 5575000 4381600 1193400 1201500 624320 577160 4268700 2306500 1962300 540770 320070 220710 8067 3213 8386 40157;40158;40159;40160;40161 40137 40137 1 ETPHSPGVEDAPIAK NEEILERPAQLANARETPHSPGVEDAPIAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ R E T A K V 2 0 0 1 0 0 2 1 1 1 0 1 0 0 3 1 1 0 0 1 0 0 15 0 1546.7627 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 486 500 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.0021799 32.523 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.62481 0.65997 39.824 5 Median NaN NaN NaN 0 0 Median 0.75035 0.6673 NaN 1 0 Median 0.58584 0.63115 6.3132 2 0 Median NaN NaN NaN 0 0 Median 0.5772 0.59688 NaN 1 0 Median 1.8435 1.5266 NaN 1 0 Median 14228000 8785500 5442800 0 0 0 1456900 940950 515940 8444400 5617100 2827300 0 0 0 3050700 1830100 1220600 1276300 397320 878960 8068 4273 8387 40162;40163;40164;40165;40166 40138;40139;40140;40141;40142;40143 40140 6 ETPPPLVPPAAR ______________________________ MRKETPPPLVPPAAREWNLPPNAPACMERQ K E T A R E 2 1 0 0 0 0 1 0 0 0 1 0 0 0 5 0 1 0 0 1 0 0 12 0 1243.6925 Q9BQA1 Q9BQA1 4 15 WDR77 Methylosome protein 50 yes yes 2 0.0030208 47.198 By MS/MS By MS/MS 2 1 0.52719 0.50927 44.448 3 Median 0.7278 0.72556 50.058 2 0 Median 0.52719 0.45545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19713000 12292000 7421200 16544000 10405000 6138200 3169700 1886700 1283100 0 0 0 0 0 0 0 0 0 0 0 0 8069 3787 8388 40167;40168;40169 40144;40145 40144 2 ETPSSILLGSNQGSDHSR KSKESGSTLDLSGSRETPSSILLGSNQGSD SSILLGSNQGSDHSRSNKSSWSSSDEKRGS R E T S R S 0 1 1 1 0 1 1 2 1 1 2 0 0 0 1 5 1 0 0 0 0 0 18 0 1883.8973 Q9ULU4 Q9ULU4 1128 1145 ZMYND8 Protein kinase C-binding protein 1 yes yes 3 0.0049129 35.133 By MS/MS 1 0.86395 0.95011 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86395 0.95011 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8198500 4983400 3215100 0 0 0 0 0 0 8198500 4983400 3215100 0 0 0 0 0 0 0 0 0 8070 4328 8389 40170 40146 40146 1 ETQALILAPTR TFSISVLQCLDIQVRETQALILAPTRELAV IQVRETQALILAPTRELAVQIQKGLLALGD R E T T R E 2 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1211.6874 P38919 P38919 106 116 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.0001325 142.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 4 0.90227 0.83602 93.144 11 Median 1.2128 1.1514 3.5187 2 2 Median 1.0948 0.94224 NaN 1 0 Median 0.8834 0.90727 11.568 2 0 Median 0.96299 0.83549 5.4988 2 0 Median 0.15223 0.15048 173.38 2 1 Median 0.65251 0.5421 44.473 2 2 Median 553760000 420290000 133470000 32883000 15052000 17831000 2450600 1081200 1369400 86107000 43659000 42448000 64187000 30343000 33844000 349380000 319260000 30119000 18750000 10896000 7853800 8071 2278 8390 40171;40172;40173;40174;40175;40176;40177;40178;40179;40180;40181;40182;40183 40147;40148;40149;40150;40151;40152;40153;40154;40155;40156;40157;40158;40159;40160;40161;40162;40163 40157 17 ETQALVLAPTR TFAISILQQLEIEFKETQALVLAPTRELAQ IEFKETQALVLAPTRELAQQIQKVILALGD K E T T R E 2 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1197.6717 Q14240;E7EQG2;J3KSN7 Q14240 101 111 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.0001773 78.556 By MS/MS By MS/MS By MS/MS 2 2 2 1.0313 0.9334 11.745 6 Median 0.9312 0.92712 13.059 2 0 Median 1.0697 0.9334 4.0293 2 0 Median 0.97857 1.0172 19.899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26508000 13906000 12602000 7648600 4443900 3204700 8937300 4408100 4529200 9922100 5054500 4867600 0 0 0 0 0 0 0 0 0 8072 2867 8391 40184;40185;40186;40187;40188;40189 40164;40165;40166;40167;40168;40169;40170 40164 7 ETQDLIEQGALLQAHR VENLKNIFSVPEIVRETQDLIEQGALLQAH TQDLIEQGALLQAHRKLMDLECSRDGLMYE R E T H R K 2 1 0 1 0 3 2 1 1 1 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1820.9381 O60645;D6RB59 O60645 128 143 EXOC3 Exocyst complex component 3 yes no 3 0.061529 17.917 By MS/MS 1 1.4249 1.2257 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4249 1.2257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1076500 491570 584900 0 0 0 0 0 0 0 0 0 1076500 491570 584900 0 0 0 0 0 0 8073 1623 8392 40190 40171 40171 1 ETQEDKLEGGAAK QPTELVSKEREEKVKETQEDKLEGGAAKRE VKETQEDKLEGGAAKRETKEVQTNELKAEK K E T A K R 2 0 0 1 0 1 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 13 1 1374.6627 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 179 191 EPB41L2 Band 4.1-like protein 2 yes no 2 0.013129 61.353 By MS/MS 1 1.7649 1.6525 NaN 1 Median NaN NaN NaN 0 0 Median 1.7649 1.6525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1745000 673750 1071200 0 0 0 1745000 673750 1071200 0 0 0 0 0 0 0 0 0 0 0 0 8074 1573 8393 40191 40172 40172 1 ETQNMAWSKPR GAAFGAMNGLRLGLKETQNMAWSKPRNVQI LGLKETQNMAWSKPRNVQILNMVTRQGALW K E T P R N 1 1 1 0 0 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 11 1 1346.6401 Q5SRD1;O14925 Q5SRD1 102 112 TIMM23B;TIMM23 Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23 yes no 3 0.011565 29.299 By matching By MS/MS 1 1 1.1282 1.0871 8.8928 2 Median 1.0999 1.1576 NaN 1 0 Median 1.1573 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2183300 867940 1315400 1365000 515100 849870 818340 352850 465490 0 0 0 0 0 0 0 0 0 0 0 0 8075 1503 8394 40192;40193 40173 40173 1 ETQSQLETER RIEERCRRKLEDSTRETQSQLETERSRYQR EDSTRETQSQLETERSRYQREIDKLRQRPY R E T E R S 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 10 0 1219.5681 P15924 P15924 1923 1932 DSP Desmoplakin yes yes 2 0.0094773 45.161 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.85622 0.89517 24.661 5 Median NaN NaN NaN 0 0 Median 0.80349 0.71226 NaN 1 0 Median 0.61124 0.68214 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85622 0.89517 NaN 1 0 Median 1.3079 1.0959 19.277 2 0 Median 3460500 1788100 1672400 0 0 0 359980 220800 139180 420010 214600 205400 0 0 0 1560300 793160 767110 1120200 559570 560670 8076 2021 8395 40194;40195;40196;40197;40198 40174;40175;40176 40176 3 ETQTPVMAQPK TQVDFPPREIVTYTKETQTPVMAQPKEDEE TYTKETQTPVMAQPKEDEEEDDDVVAPKPP K E T P K E 1 0 0 0 0 2 1 0 0 0 0 1 1 0 2 0 2 0 0 1 0 0 11 0 1228.6122 Q13409 Q13409 159 169 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2 0.032574 47.823 By MS/MS 1 0.8204 0.72578 NaN 1 Median NaN NaN NaN 0 0 Median 0.8204 0.72578 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2031400 1118300 913100 0 0 0 2031400 1118300 913100 0 0 0 0 0 0 0 0 0 0 0 0 8077 2811 8396 40199 40177 40177 1 ETSEELLPPPVQTQIK IKSQDFYEKEKLLSKETSEELLPPPVQTQI TSEELLPPPVQTQIKGHASAPYFGKEEPSV K E T I K G 0 0 0 0 0 2 3 0 0 1 2 1 0 0 3 1 2 0 0 1 0 0 16 0 1807.9567 Q8N183 Q8N183 115 130 NDUFAF2 Mimitin, mitochondrial yes yes 2 0.0010166 39.266 By MS/MS By matching By MS/MS 2 2 1 0.50876 0.47348 21.743 5 Median 0.48418 0.46875 1.4193 2 0 Median 0.66706 0.57751 18.102 2 0 Median 0.37708 0.35754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14893000 10152000 4740500 9668400 6544900 3123400 1076700 653660 423010 4147800 2953700 1194100 0 0 0 0 0 0 0 0 0 8078 3355 8397 40200;40201;40202;40203;40204 40178;40179;40180;40181 40178 4 ETSELGGSDVSILDTTR AEEAMETESSEKVGKETSELGGSDVSILDT SELGGSDVSILDTTRLLRSCVQSAVGMLRD K E T T R L 0 1 0 2 0 0 2 2 0 1 2 0 0 0 0 3 3 0 0 1 0 0 17 0 1778.8534 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 3567 3583 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 4.0032E-08 97.551 By MS/MS 1 0.92327 0.91095 NaN 1 Median 0.92327 0.91095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8226100 4042900 4183200 8226100 4042900 4183200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8079 189 8398 40205 40182 40182 1 ETSGNLEQLLLAVVK YMTISGFQIEETIDRETSGNLEQLLLAVVK ETSGNLEQLLLAVVKSIRSIPAYLAETLYY R E T V K S 1 0 1 0 0 1 2 1 0 0 4 1 0 0 0 1 1 0 0 2 0 0 15 0 1612.9036 P08758;D6RBL5;D6RBE9 P08758 228 242 ANXA5 Annexin A5;Annexin yes no 2 0.00035861 58.223 By MS/MS By matching 3 1 1.1922 1.0178 9.4067 4 Median NaN NaN NaN 0 0 Median 1.1934 1.0342 10.309 3 0 Median NaN NaN NaN 0 0 Median 1.1872 0.99248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3326100 1487500 1838500 0 0 0 3209400 1427100 1782300 0 0 0 116680 60434 56244 0 0 0 0 0 0 8080 1909 8399 40206;40207;40208;40209 40183;40184 40184 2 ETSLHSPSNTSAPHSQGGIPPPTGI LNMILWGGNAWFVYKETSLHSPSNTSAPHS SAPHSQGGIPPPTGI_______________ K E T G I - 1 0 1 0 0 1 1 3 2 2 1 0 0 0 5 5 3 0 0 0 0 0 25 0 2468.1932 Q16563 Q16563 235 259 SYPL1 Synaptophysin-like protein 1 yes yes 3 3.9439E-05 39.659 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7155000 0 0 7155000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8081 2989 8400 40210 40185 40185 1 ETSMVHELNR AKQLKEQQMVMRGHRETSMVHELNRYIPTA MRGHRETSMVHELNRYIPTAAAFGGLCIGA R E T N R Y 0 1 1 0 0 0 2 0 1 0 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1214.5714 B4DR61;P61619 B4DR61 412 421 SEC61A1 Protein transport protein Sec61 subunit alpha isoform 1 yes no 2;3 0.00036818 97.431 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 1.1833 1.1007 13.615 10 Median 1.0501 1.0581 15.658 3 0 Median 1.2131 0.98402 10.267 4 0 Median 1.089 1.2226 NaN 1 0 Median 1.3714 1.2526 12.7 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41153000 17510000 23643000 7520800 3602300 3918500 31199000 12777000 18422000 1495100 682440 812700 937910 447910 490010 0 0 0 0 0 0 8082 601 8401 40211;40212;40213;40214;40215;40216;40217;40218;40219;40220 40186;40187;40188;40189;40190;40191;40192;40193;40194;40195;40196 40192 11 ETSSDVALASHILTALR AFGEEVDAVDTGISRETSSDVALASHILTA SSDVALASHILTALREKQAPELSLSSQDLE R E T L R E 3 1 0 1 0 0 1 0 1 1 3 0 0 0 0 3 2 0 0 1 0 0 17 0 1782.9476 O00273 O00273 230 246 DFFA DNA fragmentation factor subunit alpha yes yes 2 0.025692 35.737 By MS/MS 1 1.118 0.96751 NaN 1 Median NaN NaN NaN 0 0 Median 1.118 0.96751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3563500 1584000 1979500 0 0 0 3563500 1584000 1979500 0 0 0 0 0 0 0 0 0 0 0 0 8083 1454 8402 40221 40197 40197 1 ETSSLESFVR APMSSSASVPNLSSRETSSLESFVRRVANI NLSSRETSSLESFVRRVANIARTNATNNMN R E T V R R 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 3 1 0 0 1 0 0 10 0 1153.5615 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 1545 1554 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 0.022796 36.334 By MS/MS 1 0.93234 0.79185 NaN 1 Median NaN NaN NaN 0 0 Median 0.93234 0.79185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3602000 1944300 1657600 0 0 0 3602000 1944300 1657600 0 0 0 0 0 0 0 0 0 0 0 0 8084 137 8403 40222 40198 40198 1 ETSSTGEEALVAAVR HYVGGPLDALIQGLKETSSTGEEALVAAVR ETSSTGEEALVAAVRCYDDLSRLLWGLEGL K E T V R C 3 1 0 0 0 0 3 1 0 0 1 0 0 0 0 2 2 0 0 2 0 0 15 0 1518.7526 Q9H6R4;A0A0A0MRW6 Q9H6R4 650 664 NOL6 Nucleolar protein 6 yes no 2 9.5811E-10 112.15 By matching By matching By MS/MS By matching 1 2 2 1 1.1711 1.1379 21.451 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83785 0.87633 NaN 1 0 Median 1.1355 0.96115 36.879 2 0 Median 1.1711 1.2156 3.6589 2 0 Median 1.3415 1.0932 NaN 1 0 Median 15136000 7494500 7641700 0 0 0 0 0 0 1396200 928950 467200 1381700 592270 789470 11395000 5593700 5801500 963120 379630 583480 8085 3976 8404 40223;40224;40225;40226;40227;40228 40199;40200 40199 2 ETSVLAAAK LGDGAFGKVYKAQNKETSVLAAAKVIDTKS YKAQNKETSVLAAAKVIDTKSEEELEDYMV K E T A K V 3 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 9 0 888.49165 Q9H2G2 Q9H2G2 55 63 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.016192 42.869 By MS/MS 1 0.86085 0.75303 NaN 1 Median NaN NaN NaN 0 0 Median 0.86085 0.75303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1241600 598450 643110 0 0 0 1241600 598450 643110 0 0 0 0 0 0 0 0 0 0 0 0 8086 3942 8405 40229 40201 40201 1 ETTDTDTADQVIASFK SGLVTFQAFIDFMSRETTDTDTADQVIASF TTDTDTADQVIASFKVLAGDKNFITAEELR R E T F K V 2 0 0 3 0 1 1 0 0 1 0 1 0 1 0 1 4 0 0 1 0 0 16 0 1740.8054 O43707;F5GXS2;H7C144 O43707 838 853 ACTN4 Alpha-actinin-4 yes no 2 9.6887E-05 72.089 By MS/MS By MS/MS By matching 1 1 1 0.93435 1.0545 15.322 3 Plateau 1.1082 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81445 0.89499 NaN 1 0 Median 0.93435 0.78272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53347000 24563000 28785000 46059000 20866000 25193000 0 0 0 6475200 3310000 3165200 812860 386740 426120 0 0 0 0 0 0 8087 1585 8406 40230;40231;40232 40202;40203;40204;40205 40203 4 ETTESLHGDISSLK RTESDDLHTFLLEIKETTESLHGDISSLKT KETTESLHGDISSLKTTLLEGFAGVEEARE K E T L K T 0 0 0 1 0 0 2 1 1 1 2 1 0 0 0 3 2 0 0 0 0 0 14 0 1515.7417 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 744 757 NUP214 Nuclear pore complex protein Nup214 yes no 2;3 6.2257E-11 171.67 By MS/MS By MS/MS By matching 3 3 1 1.0562 1.1281 28.129 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0469 1.1281 10.921 3 0 Median 1.5309 1.3024 33.64 3 2 Median NaN NaN NaN 0 0 Median 0.9612 0.82438 NaN 1 0 Median 52407000 27303000 25104000 0 0 0 0 0 0 40322000 22972000 17350000 11064000 3783500 7280600 0 0 0 1020600 547270 473350 8088 467 8407 40233;40234;40235;40236;40237;40238;40239 40206;40207;40208;40209;40210 40206 5 ETTEVDLLTK VTEPQVAEKNEANGRETTEVDLLTKELEDF EANGRETTEVDLLTKELEDFEMKKAAARAV R E T T K E 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 0 1147.5972 Q9UG63;C9JHK9;C9JZV3 Q9UG63 49 58 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0079116 53.751 By MS/MS By MS/MS By MS/MS 1 2 1 1.2881 1.1432 21.937 4 Median NaN NaN NaN 0 0 Median 1.1105 0.94735 NaN 1 0 Median 1.2166 1.2588 28.679 2 1 Median 1.494 1.2717 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33820000 13359000 20461000 0 0 0 4203200 2020400 2182800 26118000 9779600 16338000 3499500 1559100 1940400 0 0 0 0 0 0 8089 4262 8408 40240;40241;40242;40243 40211;40212;40213 40212 3 ETTVGAVTVTHK TFCRWLENSLKGLPKETTVGAVTVTHKQLT LPKETTVGAVTVTHKQLTDFHKQVTSAEEC K E T H K Q 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 4 0 0 3 0 0 12 0 1241.6616 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 882 893 TNPO3 Transportin-3 yes no 2 0.0053966 59.542 By MS/MS 1 1.3766 1.2192 NaN 1 Median NaN NaN NaN 0 0 Median 1.3766 1.2192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1887300 765220 1122100 0 0 0 1887300 765220 1122100 0 0 0 0 0 0 0 0 0 0 0 0 8090 4461 8409 40244 40214 40214 1 ETTYYDVLGVKPNATQEELKK ______________________________ VLGVKPNATQEELKKAYRKLALKYHPDKNP K E T K K A 1 0 1 1 0 1 3 1 0 0 2 3 0 0 1 0 3 0 2 2 0 0 21 2 2425.2377 P31689 P31689 4 24 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3;4 0.00029157 31.358 By matching By MS/MS By matching 2 2 1 0.90829 0.88827 22.013 5 Median NaN NaN NaN 0 0 Median 0.81853 0.77487 19.315 2 0 Median 0.91362 1.0716 0.82806 2 0 Median 0.73589 0.70735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24184000 12174000 12010000 0 0 0 1325800 657000 668830 20012000 9972300 10039000 2846600 1544500 1302100 0 0 0 0 0 0 8091 2204 8410 40245;40246;40247;40248;40249 40215;40216 40216 2 ETVAVKPTENNEEEFTSK LEELSLEAQGIKADRETVAVKPTENNEEEF AVKPTENNEEEFTSKDKKKKGQKGKKQSFD R E T S K D 1 0 2 0 0 0 5 0 0 0 0 2 0 1 1 1 3 0 0 2 0 0 18 1 2050.9695 A0A087WUT6;O60841 A0A087WUT6 77 94 EIF5B Eukaryotic translation initiation factor 5B yes no 3 3.537E-15 111.33 By MS/MS By MS/MS By MS/MS 1 1 5 0.91889 0.87508 15.53 6 Median 0.76591 0.74083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93502 0.8902 13.675 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56873000 28807000 28066000 10350000 4799800 5550100 0 0 0 0 0 0 46523000 24008000 22516000 0 0 0 0 0 0 8092 35 8411 40250;40251;40252;40253;40254;40255;40256 40217;40218;40219;40220;40221;40222;40223;40224;40225 40219 9 ETVAVKPTENNEEEFTSKDK LEELSLEAQGIKADRETVAVKPTENNEEEF KPTENNEEEFTSKDKKKKGQKGKKQSFDDN R E T D K K 1 0 2 1 0 0 5 0 0 0 0 3 0 1 1 1 3 0 0 2 0 0 20 2 2294.0914 A0A087WUT6;O60841 A0A087WUT6 77 96 EIF5B Eukaryotic translation initiation factor 5B yes no 4 0.0098548 21.803 By MS/MS 1 1.0251 1.1223 NaN 1 Median 1.0251 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2042500 917080 1125500 2042500 917080 1125500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8093 35 8412 40257 40226 40226 1 ETVAYLQAHALTTEGIFR QEKNPEQEPIPIVLRETVAYLQAHALTTEG AYLQAHALTTEGIFRRSANTQVVREVQQKY R E T F R R 3 1 0 0 0 1 2 1 1 1 2 0 0 1 0 0 3 0 1 1 0 0 18 0 2019.0425 Q07960;H0YE29 Q07960 265 282 ARHGAP1 Rho GTPase-activating protein 1 yes no 3 0.00068107 32.926 By MS/MS By matching 1 1 1.1144 1.0421 18.621 2 Median 1.1916 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0423 0.91352 NaN 1 0 Median 3741100 1877000 1864100 3397800 1686200 1711700 0 0 0 0 0 0 0 0 0 0 0 0 343300 190860 152440 8094 2734 8413 40258;40259 40227;40228 40228 2 ETVEEQASTTER KHKLFRIKINQIQMKETVEEQASTTERVFQ QMKETVEEQASTTERVFQDRQYQIDAAIVR K E T E R V 1 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 3 0 0 1 0 0 12 0 1378.6212 Q13620;K4DI93 Q13620 830 841 CUL4B Cullin-4B yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1 1.23 1.1066 28.655 9 Median 0.99821 0.97765 8.6295 2 0 Median 1.2949 1.1172 1.3415 2 0 Median 1.1235 1.1909 3.9184 2 0 Median 1.23 1.057 NaN 1 0 Median 2.3476 2.4839 NaN 1 0 Median 1.3454 1.095 NaN 1 0 Median 19927000 8626100 11301000 5727000 2781800 2945100 5944300 2738900 3205500 3188200 1386300 1801900 978710 431030 547690 3010900 849710 2161200 1077800 438340 639500 8095 1358 8414 40260;40261;40262;40263;40264;40265;40266;40267;40268 40229;40230;40231;40232;40233;40234;40235;40236;40237;40238;40239;40240;40241;40242;40243 40238 15 ETVEEQVSTTER KHKLFRIKINQIQMKETVEEQVSTTERVFQ QMKETVEEQVSTTERVFQDRQYQIDAAIVR K E T E R V 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 3 0 0 2 0 0 12 0 1406.6525 Q13619;A0A0A0MR50 Q13619 676 687 CUL4A Cullin-4A yes no 2 0.0050499 61.353 By MS/MS 1 1.0643 0.94519 NaN 1 Median NaN NaN NaN 0 0 Median 1.0643 0.94519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1166400 619500 546850 0 0 0 1166400 619500 546850 0 0 0 0 0 0 0 0 0 0 0 0 8096 2832 8415 40269 40244 40244 1 ETVGDLEAMNEMNDELQENAR TDRNLNLEEKVRELRETVGDLEAMNEMNDE EAMNEMNDELQENARETELELREQLDMAGA R E T A R E 2 1 3 2 0 1 5 1 0 0 2 0 2 0 0 0 1 0 0 1 0 0 21 0 2407.0268 E7EX90;Q14203;Q6AWB1 E7EX90 442 462 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 3 0.02702 13.455 By MS/MS By matching 2 1 0.88847 0.89246 38.617 3 Median 1.1943 1.2029 42.217 2 0 Median NaN NaN NaN 0 0 Median 0.73283 0.78696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697600 1339100 1358500 1928000 877140 1050900 0 0 0 769590 461980 307610 0 0 0 0 0 0 0 0 0 8097 906 8416 40270;40271;40272 40245 40245 1 ETVITMSGDDHPR TRHTVDQTRPGAFERETVITMSGDDHPRAF ERETVITMSGDDHPRAFVLDECQNLMFWTN R E T P R A 0 1 0 2 0 0 1 1 1 1 0 0 1 0 1 1 2 0 0 1 0 0 13 0 1456.6616 Q07954;H0YJI8 Q07954 2323 2335 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes no 2;3 0.00031518 58.32 By MS/MS By MS/MS 2 2 0.68677 0.64278 43.163 4 Median 0.48244 0.48653 11.771 2 1 Median 1.1213 0.95929 29.007 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12762000 7545500 5216800 7173000 5075700 2097300 5589300 2469800 3119500 0 0 0 0 0 0 0 0 0 0 0 0 8098 2733 8417 40273;40274;40275;40276 40246;40247;40248;40249 40246 4 ETVLSALSR AKHYQFASGAFLHIKETVLSALSREPTVDI AFLHIKETVLSALSREPTVDISPDTVGTLS K E T S R E 1 1 0 0 0 0 1 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 9 0 974.53966 Q8WUM4;A0A3B3IT07;C9IZF9 Q8WUM4 165 173 PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.0029859 68.224 By MS/MS By matching 2 1 1.0197 0.98456 24.451 3 Plateau 0.81928 0.79235 30.716 2 0 Median 1.1125 0.96249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16402000 7740200 8661400 10818000 5123900 5693900 5583800 2616300 2967500 0 0 0 0 0 0 0 0 0 0 0 0 8099 3493 8418 40277;40278;40279 40250 40250 1 ETVNVITLYK KKMVSKYKYRDLTVRETVNVITLYKDLKPV DLTVRETVNVITLYKDLKPVLDSYVFNDGS R E T Y K D 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 2 0 1 2 0 0 10 0 1178.6547 F5H442;Q99816 F5H442 24 33 TSG101 Tumor susceptibility gene 101 protein yes no 2 0.0087066 46.158 By MS/MS By MS/MS By matching 1 1 2 1.0523 1.0214 54.9 4 Median 0.91536 0.87319 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2098 1.1947 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1646 1.1879 91.228 2 0 Median NaN NaN NaN 0 0 Median 10394000 4815700 5578000 3400000 1864100 1535900 0 0 0 4216300 1931100 2285200 0 0 0 2777500 1020600 1756900 0 0 0 8100 1030 8419 40280;40281;40282;40283 40251;40252 40251 2 ETVPTLAPK KASAISIKLGSSKPKETVPTLAPKTLSVAA GSSKPKETVPTLAPKTLSVAAAFNEDEDSE K E T P K T 1 0 0 0 0 0 1 0 0 0 1 1 0 0 2 0 2 0 0 1 0 0 9 0 954.5386 Q8WW12 Q8WW12 97 105 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2 0.015183 43.808 By MS/MS 1 0.82222 0.68071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82222 0.68071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2044900 1028100 1016900 0 0 0 0 0 0 0 0 0 2044900 1028100 1016900 0 0 0 0 0 0 8101 3505 8420 40284 40253;40254 40254 2 ETVQTTEDQILK AAVQAAVSNLVRVGKETVQTTEDQILKRDM VGKETVQTTEDQILKRDMPPAFIKVENACT K E T L K R 0 0 0 1 0 2 2 0 0 1 1 1 0 0 0 0 3 0 0 1 0 0 12 0 1403.7144 P18206 P18206 60 71 VCL Vinculin yes yes 2 0.0038247 45.137 By MS/MS 1 1.0424 0.88119 NaN 1 Median NaN NaN NaN 0 0 Median 1.0424 0.88119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13316000 6294500 7021200 0 0 0 13316000 6294500 7021200 0 0 0 0 0 0 0 0 0 0 0 0 8102 2057 8421 40285 40255 40255 1 ETVQTTEDQILKR AAVQAAVSNLVRVGKETVQTTEDQILKRDM GKETVQTTEDQILKRDMPPAFIKVENACTK K E T K R D 0 1 0 1 0 2 2 0 0 1 1 1 0 0 0 0 3 0 0 1 0 0 13 1 1559.8155 P18206 P18206 60 72 VCL Vinculin yes yes 2;3 8.4479E-16 145.89 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.98095 0.98298 12.106 6 Median 0.92693 0.96564 4.1029 2 1 Median 0.99503 0.92582 6.8869 2 0 Median 1.0088 1.1436 NaN 1 0 Median 1.2587 1.2096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45730000 22222000 23508000 20938000 9946800 10991000 20032000 9917000 10115000 3790500 1862400 1928100 969480 495650 473830 0 0 0 0 0 0 8103 2057 8422 40286;40287;40288;40289;40290;40291 40256;40257;40258;40259;40260;40261;40262 40258 7 ETVSEESNVLCLSK ACIPIKKSDPVVSYRETVSEESNVLCLSKS RETVSEESNVLCLSKSPNKHNRLYMKARPF R E T S K S 0 0 1 0 1 0 3 0 0 0 2 1 0 0 0 3 1 0 0 2 0 0 14 0 1593.7556 P13639 P13639 581 594 EEF2 Elongation factor 2 yes yes 2 2.5707E-05 98.353 By MS/MS 2 1.1865 1.1474 2.0191 2 Median 1.1865 1.1474 2.0191 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25072000 11739000 13333000 25072000 11739000 13333000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8104 1992 8423 40292;40293 40263;40264 40263 2 ETVSQRPGATVPTDFATFPSSAFLR SLSDTVEKLKDEVLKETVSQRPGATVPTDF VPTDFATFPSSAFLRAKEEQQDDTVYMGKV K E T L R A 3 2 0 1 0 1 1 1 0 0 1 0 0 3 3 3 4 0 0 2 0 0 25 1 2681.3449 E7EX90;Q14203;E7EWF7 E7EX90 1187 1211 DCTN1 Dynactin subunit 1 yes no 3 9.1531E-09 48.286 By MS/MS By matching By MS/MS By matching 2 1 1 2 0.71612 0.74469 5.386 6 Median 0.66866 0.72885 2.9121 2 0 Median 0.85458 0.82389 NaN 1 0 Median 0.58237 0.70828 NaN 1 0 Median 0.79394 0.74754 0.41075 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23848000 13501000 10347000 18824000 10315000 8508900 620290 341860 278430 3854600 2522600 1332000 549150 321670 227480 0 0 0 0 0 0 8105 906 8424 40294;40295;40296;40297;40298;40299 40265;40266;40267;40268;40269;40270;40271;40272 40266 8 ETVVEVPQVTWEDIGGLEDVKR DFRWALSQSNPSALRETVVEVPQVTWEDIG QVTWEDIGGLEDVKRELQELVQYPVEHPDK R E T K R E 0 1 0 2 0 1 4 2 0 1 1 1 0 0 1 0 2 1 0 5 0 0 22 1 2497.27 P55072 P55072 466 487 VCP Transitional endoplasmic reticulum ATPase yes yes 3 7.2538E-27 147.25 By MS/MS By MS/MS By MS/MS 3 2 1 0.96735 0.96111 8.4508 6 Median 0.92458 0.96343 3.9158 3 1 Plateau 1.0286 0.97749 2.7287 2 0 Median 1.0112 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77418000 39030000 38388000 23319000 12542000 10776000 51826000 25420000 26406000 2273000 1067700 1205200 0 0 0 0 0 0 0 0 0 8106 2494 8425 40300;40301;40302;40303;40304;40305 40273;40274;40275;40276;40277;40278;40279;40280;40281;40282;40283;40284;40285;40286 40283 14 ETWLSENQR LEQLARRFDRKAAMRETWLSENQRLVSQDN RKAAMRETWLSENQRLVSQDNFGFDLPAVE R E T Q R L 0 1 1 0 0 1 2 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1161.5415 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4;P11277 Q01082 435 443 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 2 0.00050893 119.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1.1035 0.91663 15.358 8 Median NaN NaN NaN 0 0 Median 1.1818 0.97392 10.212 2 0 Median 0.8507 0.92731 NaN 1 0 Median 0.96101 0.84127 5.8885 2 0 Median 1.2484 1.2975 NaN 1 0 Median 1.2089 0.99364 15.115 2 0 Median 74901000 37965000 36937000 0 0 0 22983000 10600000 12383000 34014000 18536000 15479000 6611400 3266600 3344800 6421300 3255400 3165900 4871600 2307300 2564400 8107 2681;1512;1960 8426 40306;40307;40308;40309;40310;40311;40312;40313 40287;40288;40289;40290;40291;40292;40293;40294;40295;40296;40297 40287 11 ETYGAFLQK EQRDRIRQAQKTIVKETYGAFLQKFGSVPF QKTIVKETYGAFLQKFGSVPFTKNPEKYIK K E T Q K F 1 0 0 0 0 1 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1055.5288 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07 A0A0A0MSB8 652 660 EXOC7 Exocyst complex component 7 yes no 2 0.039605 33.797 By matching By MS/MS By matching 1 1 1 1.5607 1.3799 30.702 3 Median NaN NaN NaN 0 0 Median 1.5607 1.3799 NaN 1 0 Median 0.85254 0.90556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9095 1.646 NaN 1 0 Median 5274300 2716700 2557500 0 0 0 620110 243750 376360 4499900 2420400 2079600 0 0 0 0 0 0 154220 52605 101620 8108 179 8427 40314;40315;40316 40298;40299 40299 2 ETYGDMADCCEK HTLFGDELCKVASLRETYGDMADCCEKQEP SLRETYGDMADCCEKQEPERNECFLSHKDD R E T E K Q 1 0 0 2 2 0 2 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 12 0 1477.516 CON__P02769 CON__P02769 106 117 yes yes 2 0.0035847 69.01 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2986700 2986700 0 0 0 0 2986700 2986700 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8109 746 8428 40317 40300 40300 1 ETYLGPNEVLK IDHLKQKIPPALFYKETYLGPNEVLKNGMY LFYKETYLGPNEVLKNGMYCSLYEVVEKTR K E T L K N 0 0 1 0 0 0 2 1 0 0 2 1 0 0 1 0 1 0 1 1 0 0 11 0 1261.6554 Q9UK61 Q9UK61 414 424 FAM208A Protein FAM208A yes yes 2 0.0063927 44.318 By matching By matching By MS/MS By matching 1 1 3 1 0.68161 0.71683 42.616 6 Median 0.41936 0.41122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48556 0.40178 NaN 1 0 Median 0.73227 0.76626 26.31 3 0 Median 1.1529 0.96324 NaN 1 0 Median 14539000 6581300 7957800 1157200 684360 472820 0 0 0 0 0 0 1662200 1111400 550830 11233000 4586300 6646600 486800 199180 287620 8110 4307 8429 40318;40319;40320;40321;40322;40323 40301;40302 40301 2 ETYVEQEQGENANDRNDR NQEKHFYTFTNEHHRETYVEQEQGENANDR VEQEQGENANDRNDRAIRVAAKWYNEHLKK R E T D R A 1 2 3 2 0 2 4 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 18 1 2165.921 Q9Y2L1;F2Z2C0 Q9Y2L1 130 147 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.0003264 37.083 By matching By MS/MS By matching By matching 1 1 2 1 0.96664 1.0472 17.687 5 Median 1.0524 1.1692 NaN 1 0 Median 0.96664 0.93192 NaN 1 0 Median 0.80974 0.95991 12.311 2 0 Median 1.3951 1.3657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6759200 3109600 3649500 1028800 481100 547730 2379300 978770 1400500 2711100 1341100 1370100 639890 308650 331240 0 0 0 0 0 0 8111 4384 8430 40324;40325;40326;40327;40328 40303 40303 1 EVAALCR SSTLFSALLIKCLEKEVAALCRYTPRRNIP LLIKCLEKEVAALCRYTPRRNIPPYFVALV K E V C R Y 2 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 817.41162 P12956;B1AHC9 P12956 393 399 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.041123 44.531 By MS/MS 2 1.5396 1.3352 10.323 2 Median NaN NaN NaN 0 0 Median 1.5396 1.3352 10.323 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4175200 1830600 2344700 0 0 0 4175200 1830600 2344700 0 0 0 0 0 0 0 0 0 0 0 0 8112 1985 8431 40329;40330 40304 40304 1 EVAAPDVGR EQIYQDRDQFAKLVREVAAPDVGRMGIEIL FAKLVREVAAPDVGRMGIEILSFTIKDVYD R E V G R M 2 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 9 0 912.46649 J3QLD9;E7EMK3;Q14254;K7EKW9 J3QLD9 136 144 FLOT2 Flotillin-2 yes no 2 0.0066958 53.775 By matching By MS/MS By matching 2 1 1 0.88419 0.7787 13.66 4 Median 0.84669 0.84936 16.817 2 0 Median 0.92713 0.80406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84324 0.69306 NaN 1 0 Median 3936400 2116500 1819900 1612600 876510 736050 1650900 879470 771460 0 0 0 0 0 0 0 0 0 672930 360560 312380 8113 856 8432 40331;40332;40333;40334 40305;40306 40306 2 EVAAQGNDYSMAFLTQR IEEKLLKNGTKDLIREVAAQGNDYSMAFLT AAQGNDYSMAFLTQRTIQELFEVYSPMDDA R E V Q R T 3 1 1 1 0 2 1 1 0 0 1 0 1 1 0 1 1 0 1 1 0 0 17 0 1899.8785 Q96L91 Q96L91 2042 2058 EP400 E1A-binding protein p400 yes yes 2;3 7.9712E-12 131.69 By MS/MS By matching 4 2 0.95382 0.9507 10.336 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92425 0.98678 9.7261 4 1 Median 1.0256 0.8889 6.6979 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19472000 9649400 9822300 0 0 0 0 0 0 19153000 9498100 9655400 318240 151290 166940 0 0 0 0 0 0 8114 3700 8433;8434 40335;40336;40337;40338;40339;40340 40307;40308;40309;40310;40311 40308 1812 5 EVADEVTRPRPSGEEVLQDIQVMLK KQPAEHLQLLEEAAKEVADEVTRPRPSGEE PSGEEVLQDIQVMLKSDASPSSIRSLKSDM K E V L K S 1 2 0 2 0 2 4 1 0 1 2 1 1 0 2 1 1 0 0 4 0 0 25 2 2837.4593 P33992;B1AHA9 P33992 105 129 MCM5 DNA replication licensing factor MCM5 yes no 3 0.074617 6.5761 By MS/MS 1 0.62652 0.76274 NaN 1 Median NaN NaN NaN 0 0 Median 0.62652 0.76274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5196200 3443500 1752600 0 0 0 5196200 3443500 1752600 0 0 0 0 0 0 0 0 0 0 0 0 8115 2224 8435 40341 40312 40312 1 EVAEAATGEDASSPPPK ______________________________ AEAATGEDASSPPPKTEAASDPQHPAASEG R E V P K T 4 0 0 1 0 0 3 1 0 0 0 1 0 0 3 2 1 0 0 1 0 0 17 0 1654.7686 Q99536;K7ERT7 Q99536 6 22 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 2.2708E-05 70.089 By matching By MS/MS 1 1 0.72002 0.66062 1.5402 2 Median 0.66886 0.65347 NaN 1 0 Median 0.77509 0.66786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193700 1219000 974710 372550 223460 149090 1821200 995570 825620 0 0 0 0 0 0 0 0 0 0 0 0 8116 3750 8436 40342;40343 40313;40314 40313 2 EVAEMDSVKR RKTLDELSQGTTTVKEVAEMDSVKRSLEGG TTTVKEVAEMDSVKRSLEGGNFIAGVLIQG K E V K R S 1 1 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 2 0 0 10 1 1162.5652 P58107;A0A075B730 P58107 1556 1565 EPPK1 Epiplakin yes no 2 0.01347 45.161 By MS/MS By MS/MS 1 1 1.6043 1.5762 9.1382 2 Median 1.6642 1.6814 NaN 1 0 Median 1.5464 1.4775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3088400 944230 2144200 786370 285270 501100 2302000 658960 1643000 0 0 0 0 0 0 0 0 0 0 0 0 8117 2520 8437 40344;40345 40315;40316 40316 2 EVAENQQNQSSDPEEEKGSQPPPAAESQSSLR DSSQLGTDATKEKPKEVAENQQNQSSDPEE GSQPPPAAESQSSLRRQKREKETSESRGIS K E V L R R 3 1 2 1 0 5 6 1 0 0 1 1 0 0 4 6 0 0 0 1 0 0 32 1 3452.5564 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3;E9PQD2;E9PIG0;E9PRG1;E9PQN0;E9PJP4 O43491 29 60 EPB41L2 Band 4.1-like protein 2 yes no 3 0.019848 14.375 By MS/MS 1 0.42976 0.41301 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42976 0.41301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1472200 898930 573270 0 0 0 0 0 0 0 0 0 1472200 898930 573270 0 0 0 0 0 0 8118 1573 8438 40346 40317 40317 1 EVAFFNNFLTDAK HIFNKHAEKIEEVKKEVAFFNNFLTDAKRP KKEVAFFNNFLTDAKRPALPEIKPAQPPGP K E V A K R 2 0 2 1 0 0 1 0 0 0 1 1 0 3 0 0 1 0 0 1 0 0 13 0 1514.7405 Q9BXP5;H7C3A1;A0A0A0MSP6 Q9BXP5 746 758 SRRT Serrate RNA effector molecule homolog yes no 2 0.00054372 70.977 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 3 2 1.0869 1.056 28.237 11 Median 1.1748 1.1433 NaN 1 0 Median 0.48458 0.46861 NaN 1 0 Median 1.0299 1.1192 4.8532 3 0 Median 1.3465 1.1951 NaN 1 0 Median 1.0888 1.1205 24.533 3 0 Plateau 1.198 1.0144 2.502 2 0 Median 44689000 21517000 23172000 6109700 2703500 3406200 1805200 1315300 489870 27409000 12879000 14530000 229230 89832 139400 8433000 4205200 4227800 702210 323670 378540 8119 3879 8439 40347;40348;40349;40350;40351;40352;40353;40354;40355;40356;40357 40318;40319;40320;40321;40322;40323 40322 6 EVAGAKPHITAAEGK ELEKMKSVIENAKKKEVAGAKPHITAAEGK EVAGAKPHITAAEGKLHNMIVDLDNVVKKV K E V G K L 4 0 0 0 0 0 2 2 1 1 0 2 0 0 1 0 1 0 0 1 0 0 15 1 1477.7889 Q16891;B9A067;C9J406;H7C463 Q16891 316 330 IMMT MICOS complex subunit MIC60 yes no 3 2.6572E-05 81.632 By matching By MS/MS By matching By MS/MS 1 1 1 2 1.1034 0.98467 19.471 5 Median 0.84946 0.87851 NaN 1 0 Median 1.294 1.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2571 1.4059 NaN 1 0 Median 1.0923 0.98329 0.19905 2 0 Median 7314400 3333000 3981500 2100400 1067300 1033100 4253000 1795100 2457900 0 0 0 0 0 0 365640 191830 173820 595460 278810 316650 8120 3001 8440 40358;40359;40360;40361;40362 40324;40325;40326 40324 3 EVAGFVLNR ALMKKIGQCPMRVQKEVAGFVLNRLQYAII PMRVQKEVAGFVLNRLQYAIISEAWRLVER K E V N R L 1 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1003.5451 A0A2R8YFQ7;A0A2R8YCZ4;A0A2R8Y4K2;Q9Y2S2;A0A087WW38 A0A2R8YFQ7 189 197 CRYL1 Lambda-crystallin homolog yes no 2 0.0098638 48.756 By MS/MS By matching 1 1 1.2041 1.0894 30.796 2 Median 0.91785 0.8762 NaN 1 0 Median 1.5797 1.3544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4336700 1672300 2664500 3779600 1475000 2304600 557150 197300 359850 0 0 0 0 0 0 0 0 0 0 0 0 8121 364 8441 40363;40364 40327 40327 1 EVAGHTEQLQMSR DAEAWFTSRTEELNREVAGHTEQLQMSRSE NREVAGHTEQLQMSRSEVTDLRRTLQGLEI R E V S R S 1 1 0 0 0 2 2 1 1 0 1 0 1 0 0 1 1 0 0 1 0 0 13 0 1484.7042 CON__P08727;P08727;K7EMS3 CON__P08727 281 293 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 1.1658E-07 125.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 5 5 1.3181 1.1977 22.875 19 Median 1.0275 1.0457 NaN 1 0 Median 1.782 1.5073 18.202 3 1 Median 1.0041 1.0568 21.753 4 0 Median 1.6047 1.3854 21.357 2 0 Median 1.223 1.2302 9.404 4 1 Median 1.5222 1.284 17.16 5 0 Median 229550000 103890000 125660000 1357800 643230 714540 34322000 11987000 22335000 90216000 44688000 45528000 13440000 5245700 8194300 56434000 28392000 28042000 33780000 12934000 20846000 + 8122 752 8442 40365;40366;40367;40368;40369;40370;40371;40372;40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384;40385;40386 40328;40329;40330;40331;40332;40333;40334;40335;40336;40337;40338;40339;40340;40341;40342;40343;40344;40345;40346;40347;40348;40349;40350;40351;40352;40353;40354;40355;40356;40357 40354 30 EVAGLVTLK KAAAGIEKGARQTGKEVAGLVTLKHVYEIA ARQTGKEVAGLVTLKHVYEIARIKAQDEAF K E V L K H 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 928.55933 Q9Y3B7 Q9Y3B7 107 115 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.014167 44.753 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.368 1.1839 17.586 6 Median 1.2033 1.121 NaN 1 0 Median 1.4105 1.2055 19.325 3 0 Median 1.0792 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7301 1.4395 NaN 1 0 Median 14042000 6488500 7553100 8403000 4036200 4366800 1619400 639320 980060 3470500 1627400 1843100 0 0 0 0 0 0 548670 185550 363120 8123 4416 8443 40387;40388;40389;40390;40391;40392 40358;40359;40360 40358 3 EVAGLWIK VPLSSPLKVDLVLEKEVAGLWIKIPCTDYI VDLVLEKEVAGLWIKIPCTDYIGSCTFEHF K E V I K I 1 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 8 0 914.52255 P17900;H0YBY3;E5RJD0 P17900 89 96 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes no 2 0.026977 41.502 By MS/MS By matching 1 1 1.6783 1.5501 11.379 2 Median 1.513 1.4302 NaN 1 0 Median 1.8617 1.6799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5714400 2223800 3490600 5131500 2048900 3082600 582920 174990 407930 0 0 0 0 0 0 0 0 0 0 0 0 8124 2048 8444 40393;40394 40361 40361 1 EVAIIVDQR PGAVALVAFLQALEKEVAIIVDQRAWNLHQ LQALEKEVAIIVDQRAWNLHQKIVEDAVEQ K E V Q R A 1 1 0 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 1041.5819 A0A0C4DGD4;H0YB62;H0YB09;Q7Z3D6 A0A0C4DGD4 375 383 C14orf159 UPF0317 protein C14orf159, mitochondrial yes no 2 0.018988 40.268 By MS/MS 1 1.3722 1.0976 NaN 1 Median NaN NaN NaN 0 0 Median 1.3722 1.0976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25020000 10572000 14448000 0 0 0 25020000 10572000 14448000 0 0 0 0 0 0 0 0 0 0 0 0 8125 242 8445 40395 40362 40362 1 EVANAVVRPLGQVLGTPSVAGSENLLK GHTSVLHSYPESVGREVANAVVRPLGQVLG VLGTPSVAGSENLLKTDKEVKWTMEVICYG R E V L K T 3 1 2 0 0 1 2 3 0 0 4 1 0 0 2 2 1 0 0 5 0 0 27 1 2717.5076 Q86X10 Q86X10 32 58 RALGAPB Ral GTPase-activating protein subunit beta yes yes 3 2.6898E-05 33.414 By MS/MS By MS/MS 1 1 0.6038 0.64608 2.6951 2 Median 0.65183 0.65851 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55931 0.63388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8282400 5151700 3130700 4367300 2641800 1725400 0 0 0 3915100 2509900 1405200 0 0 0 0 0 0 0 0 0 8126 3298 8446 40396;40397 40363;40364;40365 40364 3 EVANSTANLVK TTNPTAKRQFVQSAKEVANSTANLVKTIKA QSAKEVANSTANLVKTIKALDGAFTEENRA K E V V K T 2 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 11 0 1144.6088 Q9Y490 Q9Y490 1531 1541 TLN1 Talin-1 no no 2 0.00013635 85.731 By MS/MS By matching By MS/MS 2 1 1 1.1808 1.0609 11.679 4 Median NaN NaN NaN 0 0 Median 1.227 1.0847 7.7805 2 0 Median NaN NaN NaN 0 0 Median 1.2041 1.0964 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0244 0.87766 NaN 1 0 Median 19423000 9330800 10092000 0 0 0 14670000 6849000 7821100 0 0 0 1190900 690520 500380 0 0 0 3561800 1791200 1770600 8127 4441 8447 40398;40399;40400;40401 40366;40367;40368 40367 1 EVASNSELVQSSR DAETWFLSKTEELNKEVASNSELVQSSRSE NKEVASNSELVQSSRSEVTELRRVLQGLEI K E V S R S 1 1 1 0 0 1 2 0 0 0 1 0 0 0 0 4 0 0 0 2 0 0 13 0 1404.6845 CON__P08779;P08779;K7ENW6 CON__P08779 318 330 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.00054412 81.865 By MS/MS By MS/MS By MS/MS 2 1 1 0.038579 0.030053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.038579 0.030053 NaN 1 1 Median 2340700 2337400 3318.5 0 0 0 0 0 0 1452700 1452700 0 339940 339940 0 0 0 0 548110 544790 3318.5 + 8128 754 8448 40402;40403;40404;40405 40369;40370;40371;40372 40370 4 EVATNSELVQSGK DAEDWFFSKTEELNREVATNSELVQSGKSE NREVATNSELVQSGKSEISELRRTMQALEI R E V G K S 1 0 1 0 0 1 2 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1360.6834 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7ESE1 CON__Q04695 285 297 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 4.7841E-07 138.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 9 5 11 3 4 0.2629 0.22811 123.21 25 Median 0.2629 0.25847 111.44 3 2 Median 0.61857 0.52539 60.057 5 3 Median 0.44373 0.45988 173.08 4 2 Median 0.166 0.14351 82.901 6 4 Median 0.22327 0.22214 98.991 3 1 Median 0.16937 0.14179 173.06 4 1 Median 140230000 100660000 39572000 12102000 10096000 2006300 22471000 17159000 5312100 27185000 14134000 13051000 30652000 24103000 6549300 21917000 16286000 5630800 25907000 18885000 7022600 + 8129 768;739 8449 40406;40407;40408;40409;40410;40411;40412;40413;40414;40415;40416;40417;40418;40419;40420;40421;40422;40423;40424;40425;40426;40427;40428;40429;40430;40431;40432;40433;40434;40435;40436;40437;40438;40439;40440;40441;40442;40443 40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384;40385;40386;40387;40388;40389;40390;40391;40392;40393;40394;40395;40396;40397;40398;40399;40400;40401;40402;40403;40404;40405;40406;40407;40408;40409;40410;40411;40412;40413;40414;40415;40416;40417;40418 40405 46 EVAWNLTSVDLVR AAKNLQKEVIHRKSKEVAWNLTSVDLVRAS SKEVAWNLTSVDLVRASEAHCHYVVVKLFS K E V V R A 1 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 1 1 0 3 0 0 13 0 1500.7936 Q15067 Q15067 513 525 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes yes 2 0.0038536 42.743 By MS/MS 1 1.7637 1.6551 NaN 1 Median 1.7637 1.6551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 801200 275090 526120 801200 275090 526120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8130 2925 8450 40444 40419 40419 1 EVCGFAPYER GRLTKHTKFVRDMIREVCGFAPYERRAMEL RDMIREVCGFAPYERRAMELLKVSKDKRAL R E V E R R 1 1 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 10 0 1226.539 Q9Y3U8;J3QSB5 Q9Y3U8 46 55 RPL36 60S ribosomal protein L36 yes no 2 0.0012299 107.69 By MS/MS By MS/MS 2 1 1.4573 1.4763 16.035 3 Median 1.3939 1.3463 21.391 2 2 Median NaN NaN NaN 0 0 Median 1.4573 1.4763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41607000 18243000 23364000 30829000 13167000 17661000 0 0 0 10778000 5075900 5702300 0 0 0 0 0 0 0 0 0 8131 4434 8451 40445;40446;40447 40420;40421;40422 40421 3 EVDDLEQWIAER RGKLDERHRLFQLNREVDDLEQWIAEREVV LNREVDDLEQWIAEREVVAGSHELGQDYEH R E V E R E 1 1 0 2 0 1 3 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 12 0 1501.7049 Q01082;A0A087WUZ3 Q01082 1706 1717 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.7743E-06 131.28 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 1 1.1172 1.0405 9.1869 7 Median 1.2075 1.1608 NaN 1 0 Median 1.2107 1.028 1.7129 2 0 Median 1.0377 1.129 8.5051 2 0 Median 1.052 0.92087 NaN 1 0 Median 0.94021 0.98242 NaN 1 1 Median NaN NaN NaN 0 0 Median 17935000 8192700 9742000 4433100 1903000 2530100 6430200 2516400 3913800 5534100 2909600 2624500 349990 178500 171500 1187400 685190 502180 0 0 0 8132 2681 8452 40448;40449;40450;40451;40452;40453;40454 40423;40424;40425;40426;40427;40428;40429;40430 40424 8 EVDDLGPEVGDIK TGQEEIDEACKRIKREVDDLGPEVGDIKII KREVDDLGPEVGDIKIIPLYSTLPPQQQQR R E V I K I 0 0 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1384.6722 O43143 O43143 372 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 4.8234E-07 107.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 3 3 0.89483 0.87295 25.773 13 Median 1.0298 0.97355 36.813 2 0 Median 0.87362 0.76087 3.8075 2 0 Median 0.84367 0.88381 2.1236 2 0 Median 1.0372 0.89893 NaN 1 0 Median 1.0068 1.0229 14.832 3 0 Median 1.0583 0.87295 49.648 3 0 Median 113910000 62885000 51027000 19473000 12158000 7314600 8123600 4254500 3869200 34951000 19020000 15931000 3874000 1852300 2021600 42098000 22746000 19352000 5393600 2854400 2539200 8133 1553 8453 40455;40456;40457;40458;40459;40460;40461;40462;40463;40464;40465;40466;40467 40431;40432;40433;40434;40435;40436;40437;40438;40439;40440 40434 10 EVDDLTAELK DSVLRTEKEIKDTEKEVDDLTAELKSLEDK KDTEKEVDDLTAELKSLEDKAAEVVKNTNA K E V L K S 1 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1131.5659 Q9NTJ3;E9PD53 Q9NTJ3 954 963 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.013464 40.002 By MS/MS 1 1.4146 1.2836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4146 1.2836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1636600 636650 999920 0 0 0 0 0 0 0 0 0 1636600 636650 999920 0 0 0 0 0 0 8134 4108 8454 40468 40441;40442 40442 2 EVDEDFDSK LGAPQTHLGLKNMIKEVDEDFDSKLSFREF LKNMIKEVDEDFDSKLSFREFLLIFRKAAA K E V S K L 0 0 0 3 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 1082.4404 Q96C19;H0Y4Y4 Q96C19 139 147 EFHD2 EF-hand domain-containing protein D2 yes no 2 0.00090662 91.318 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.0686 0.89736 32.265 7 Median 0.76419 0.74365 61.973 2 0 Median 1.0415 0.8792 2.891 2 0 Median 1.3213 1.2951 NaN 1 0 Median 1.2677 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0418 0.8671 NaN 1 0 Median 14319000 7129500 7189900 3881500 2071800 1809700 8123200 3890900 4232300 756920 398100 358820 1050500 480820 569700 0 0 0 507170 287830 219340 8135 3613 8455 40469;40470;40471;40472;40473;40474;40475 40443;40444;40445;40446;40447 40444 5 EVDEDSEPER APASVVPFVRVKREREVDEDSEPEREVRAK VKREREVDEDSEPEREVRAKNGRVDSEDRR R E V E R E 0 1 0 2 0 0 4 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1203.4891 B9A018;Q53GS9;F8WC91 B9A018 77 86 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.0028895 58.676 By MS/MS By MS/MS By MS/MS 1 2 1 0.91287 0.84263 6.6584 4 Median NaN NaN NaN 0 0 Median 1.0759 0.93313 NaN 1 0 Median 0.79725 0.8121 0.65337 2 0 Median 1.037 0.87027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2762800 1333900 1428900 0 0 0 1012900 426370 586520 1025300 566060 459240 724580 341440 383140 0 0 0 0 0 0 8136 654 8456 40476;40477;40478;40479 40448;40449;40450;40451;40452;40453 40453 6 EVDEGPSPPEQFTAVK HALDNGLFTLGAPHKEVDEGPSPPEQFTAV VDEGPSPPEQFTAVKLSDSRIALKSGYGKY K E V V K L 1 0 0 1 0 1 3 1 0 0 0 1 0 1 3 1 1 0 0 2 0 0 16 0 1728.8206 Q14331;E9PRR7 Q14331 86 101 FRG1 Protein FRG1 yes no 2 0.047238 22.474 By matching By MS/MS 1 1 0.59447 0.53538 26.242 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67012 0.64454 NaN 1 0 Median 0.52736 0.44471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10914000 6243700 4670400 0 0 0 0 0 0 8360800 4340300 4020500 2553300 1903400 649880 0 0 0 0 0 0 8137 2874 8457 40480;40481 40454 40454 1 EVDEISPEDDQR LEPRVGAGAGAAPFREVDEISPEDDQRANR PFREVDEISPEDDQRANRTLFLGNLDITVT R E V Q R A 0 1 0 3 0 1 3 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 12 0 1430.6161 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 316 327 RBM15 Putative RNA-binding protein 15 yes no 2 3.3374E-06 137.98 By MS/MS By MS/MS 1 1 0.85638 0.81532 9.8957 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7143 0.76022 NaN 1 0 Median 1.0267 0.87442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9049600 4578400 4471200 0 0 0 0 0 0 7107700 3748000 3359700 1941900 830440 1111500 0 0 0 0 0 0 8138 60 8458 40482;40483 40455;40456;40457;40458 40455 4 EVDEQMLAIQSK YLTVATVFRGPMSMKEVDEQMLAIQSKNSS SMKEVDEQMLAIQSKNSSYFVEWIPNNVKV K E V S K N 1 0 0 1 0 2 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1389.681 A0A0B4J269;Q13509;Q9BUF5;K7ESM5 Q9BUF5 325 336 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 0.00031567 82.261 By MS/MS By MS/MS By matching By matching By matching By matching 1 3 1 1 1 2 1.1088 0.95648 26.251 9 Median 0.99173 0.91777 NaN 1 0 Median 1.0598 0.92667 9.1947 3 0 Median 1.2817 1.245 NaN 1 0 Median 1.1088 0.95648 NaN 1 0 Median 1.8263 1.7431 NaN 1 0 Median 0.99417 0.83579 26.543 2 0 Median 39148000 17503000 21644000 14480000 7206500 7273600 8676000 3983500 4692500 9089400 3306400 5783000 1153600 438720 714850 3129500 1288900 1840600 2619000 1279200 1339900 8139 3838;216 8459 40484;40485;40486;40487;40488;40489;40490;40491;40492 40459;40460;40461;40462 40460 4 EVDEQMLNVQNK YLTVAAVFRGRMSMKEVDEQMLNVQNKNSS SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT K E V N K N 0 0 2 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 12 0 1445.682 Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 325 336 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 1.1026E-30 214.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 9 6 7 4 7 1.1646 1.0399 19.791 40 Median 1.0978 1.0066 9.8445 9 1 Median 1.1596 0.98387 13.385 9 2 Median 1.1053 1.075 31.39 6 1 Median 1.1691 1.0166 11.608 6 1 Median 2.0106 1.8621 11.92 4 0 Linear 1.289 1.0717 5.8153 6 1 Median 1882200000 834330000 1047900000 695030000 320600000 374430000 557240000 243770000 313470000 279210000 127270000 151930000 178730000 74704000 104020000 87308000 31981000 55326000 84692000 36004000 48688000 8140 2634;1887;3849;2844 8460;8461 40493;40494;40495;40496;40497;40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530;40531;40532;40533;40534 40463;40464;40465;40466;40467;40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478;40479;40480;40481;40482;40483;40484;40485;40486;40487;40488;40489;40490;40491;40492;40493;40494;40495;40496;40497;40498;40499;40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529 40498 655 67 EVDGEGKPYYEVR LDSQNLSAYNTRLFKEVDGEGKPYYEVRLA FKEVDGEGKPYYEVRLASVLGSEPSLDSEV K E V V R L 0 1 0 1 0 0 3 2 0 0 0 1 0 0 1 0 0 0 2 2 0 0 13 1 1539.7205 G3V1D3;G3V180;Q9NY33;E9PQ14 G3V1D3 222 234 DPP3 Dipeptidyl peptidase 3 yes no 2;3 0.00093749 48.004 By MS/MS By MS/MS 2 2 1.0614 1.0731 22.765 4 Median 0.87223 0.89461 8.7297 2 0 Median 1.299 1.2973 9.8523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18664000 9331900 9332200 11976000 6260200 5715400 6688400 3071600 3616800 0 0 0 0 0 0 0 0 0 0 0 0 8141 1102 8462 40535;40536;40537;40538 40530;40531;40532;40533;40534 40530 5 EVDGLDVSK ANAIEEVNLAYENVKEVDGLDVSKEGTEAW AYENVKEVDGLDVSKEGTEAWEAAMKRYDE K E V S K E 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 960.47639 Q14204 Q14204 532 540 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0015606 80.165 By matching By matching By MS/MS By matching 1 2 1 1 1.0863 1.0339 27.848 5 Median 1.2655 1.2846 NaN 1 0 Median 0.90357 0.79821 36.592 2 0 Median NaN NaN NaN 0 0 Median 1.0863 1.0507 NaN 1 0 Median 0.81498 0.83878 NaN 1 0 Median NaN NaN NaN 0 0 Median 19465000 9648900 9815800 796480 342890 453590 14221000 6966500 7254700 0 0 0 2710500 1220800 1489700 1736400 1118700 617720 0 0 0 8142 2865 8463 40539;40540;40541;40542;40543 40535 40535 1 EVDGLDVSKEGTEAWEAAMK ANAIEEVNLAYENVKEVDGLDVSKEGTEAW DVSKEGTEAWEAAMKRYDERIDRVETRITA K E V M K R 3 0 0 2 0 0 4 2 0 0 1 2 1 0 0 1 1 1 0 2 0 0 20 1 2163.9994 Q14204 Q14204 532 551 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 9.2169E-09 73.11 By MS/MS By matching 1 1 0.92687 1.0316 7.5344 2 Median 0.89748 0.97811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95723 1.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8885300 4600200 4285100 7587100 4011300 3575900 0 0 0 1298100 588930 709200 0 0 0 0 0 0 0 0 0 8143 2865 8464 40544;40545 40536 40536 1 EVDGLDVSKEGTEAWEAAMKR ANAIEEVNLAYENVKEVDGLDVSKEGTEAW VSKEGTEAWEAAMKRYDERIDRVETRITAR K E V K R Y 3 1 0 2 0 0 4 2 0 0 1 2 1 0 0 1 1 1 0 2 0 0 21 2 2320.1005 Q14204 Q14204 532 552 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00013753 35.389 By MS/MS By matching 1 1 1.3593 1.4022 2.2849 2 Median 1.2678 1.3797 NaN 1 0 Median 1.4575 1.425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6316000 3014400 3301600 5620600 2696900 2923700 695390 317470 377920 0 0 0 0 0 0 0 0 0 0 0 0 8144 2865 8465 40546;40547 40537 40537 1 EVDIGIPDATGR NSIDPALRRFGRFDREVDIGIPDATGRLEI FDREVDIGIPDATGRLEILQIHTKNMKLAD R E V G R L 1 1 0 2 0 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 12 0 1241.6252 P55072 P55072 366 377 VCP Transitional endoplasmic reticulum ATPase yes yes 2 3.3934E-06 117.71 By MS/MS By MS/MS By MS/MS 2 1 1 1.0863 1.0027 17.079 4 Median 1.0517 1.0027 14.662 2 0 Median 1.0198 0.88218 NaN 1 0 Median 1.1872 1.2599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115010000 58022000 56986000 68365000 34391000 33974000 34492000 17802000 16690000 12151000 5828400 6322500 0 0 0 0 0 0 0 0 0 8145 2494 8466 40548;40549;40550;40551 40538;40539;40540;40541;40542;40543;40544;40545 40539 8 EVDIGIPDATGRLEILQIHTK NSIDPALRRFGRFDREVDIGIPDATGRLEI PDATGRLEILQIHTKNMKLADDVDLEQVAN R E V T K N 1 1 0 2 0 1 2 2 1 4 2 1 0 0 1 0 2 0 0 1 0 0 21 1 2317.2642 P55072 P55072 366 386 VCP Transitional endoplasmic reticulum ATPase yes yes 3 0.014737 18.701 By MS/MS By matching 2 1 0.88305 0.90492 11.209 3 Median 0.93001 0.95898 8.205 2 0 Median 0.80889 0.81221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6085000 3192900 2892100 5366900 2811700 2555200 718130 381240 336890 0 0 0 0 0 0 0 0 0 0 0 0 8146 2494 8467 40552;40553;40554 40546;40547 40547 2 EVDIYTVK VVDPKQLVTNACLIKEVDIYTVKVEDLTFT TNACLIKEVDIYTVKVEDLTFTSPFCLQVK K E V V K V 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 2 0 0 8 0 965.50696 E9PKG1;Q99873;Q9NR22 E9PKG1 208 215 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 2 0.0054254 75.854 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.76434 0.68113 9.6755 4 Median 0.76745 0.71718 NaN 1 1 Median 0.75495 0.64338 NaN 1 0 Median 0.7634 0.78876 NaN 1 0 Median 0.76529 0.64688 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36029000 19291000 16738000 7285600 3711400 3574200 12506000 6961900 5544000 14078000 7402100 6675900 2159300 1215600 943690 0 0 0 0 0 0 8147 947 8468 40555;40556;40557;40558 40548;40549;40550;40551;40552;40553 40549 6 EVDKNWLEGEHHGR KELTLQKGDIVYIHKEVDKNWLEGEHHGRL KEVDKNWLEGEHHGRLGIFPANYVEVLPAD K E V G R L 0 1 1 1 0 0 3 2 2 0 1 1 0 0 0 0 0 1 0 1 0 0 14 1 1704.7968 O60504;E5RIA0;E5RJP2;H0YB51 O60504 412 425 SORBS3 Vinexin yes no 4 0.031177 19.075 By MS/MS By matching 2 1 0.86545 0.92457 5.2089 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81158 0.90862 7.2283 2 0 Median 1.049 0.92457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3976000 1988400 1987600 0 0 0 0 0 0 3393400 1689000 1704400 582630 299360 283260 0 0 0 0 0 0 8148 1618 8469 40559;40560;40561 40554;40555 40555 2 EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR ALDMTTLTIMRYLPREVDPLVYNMSHEDPG NVSYSEIGGLSEQIRELREVIELPLTNPEL R E V I R E 0 1 2 2 0 1 4 3 1 2 2 0 1 0 2 4 0 0 2 3 0 0 30 0 3333.546 A0A087X2I1;P62333;H0YJC0;H0YJS8 A0A087X2I1 128 157 PSMC6 26S protease regulatory subunit 10B yes no 3 3.4403E-05 27.863 By MS/MS 1 0.93729 1.0168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93729 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2984800 1386100 1598700 0 0 0 0 0 0 2984800 1386100 1598700 0 0 0 0 0 0 0 0 0 8149 138 8470 40562 40556 40556 1 EVDPQGLR ANMDLANSDALKLAKEVDPQGLRTIGVITK DALKLAKEVDPQGLRTIGVITKLDLMDEGT K E V L R T 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 912.46649 P50570;K7EPK9 P50570 192 199 DNM2 Dynamin-2 no no 2 0.052986 50.966 By MS/MS 1 0.85433 0.9132 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85433 0.9132 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1931900 973510 958360 0 0 0 0 0 0 1931900 973510 958360 0 0 0 0 0 0 0 0 0 8150 2417 8471 40563 40557 40557 1 EVDVNLPK KMPKFSVPGFKAEGPEVDVNLPKADVDISG GFKAEGPEVDVNLPKADVDISGPKIDVTAP P E V P K A 0 0 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 912.49165 Q09666 Q09666 768 775 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0048619 79.116 By matching By MS/MS By MS/MS 1 1 1 0.97595 0.94829 96.295 3 Median NaN NaN NaN 0 0 Median 0.16933 0.1804 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97595 0.96424 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1066 0.94829 NaN 1 0 Median 16666000 10877000 5788600 0 0 0 6793100 5803000 990100 0 0 0 7709900 4029900 3680100 0 0 0 2162800 1044400 1118400 8151 2749 8472 40564;40565;40566 40558;40559 40558 2 EVDYSDSLTEK EEEEKMFGRGSRHRKEVDYSDSLTEKQWLK RHRKEVDYSDSLTEKQWLKAIEEGTLEEIE K E V E K Q 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1284.5721 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28 P51532 1376 1386 SMARCA4 Transcription activator BRG1 yes no 2 0.00018241 77.662 By MS/MS By MS/MS 1 1 1.0982 1.0931 8.2178 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93747 1.0314 NaN 1 0 Median 1.2865 1.1585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34942000 17348000 17594000 0 0 0 0 0 0 28851000 14762000 14090000 6090400 2586500 3503800 0 0 0 0 0 0 8152 366 8473 40567;40568 40560;40561;40562;40563 40560 4 EVDYSGLR AVTKDEDEWKELEQKEVDYSGLRVQAMQIS WKELEQKEVDYSGLRVQAMQISSEKEEDDN K E V L R V 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 937.45051 Q9UKY7;H0Y8K3 Q9UKY7 92 99 CDV3 Protein CDV3 homolog yes no 2 0.029451 39.646 By MS/MS By MS/MS 1 1 1.0171 0.85086 20.301 2 Median NaN NaN NaN 0 0 Median 1.1705 0.9822 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88386 0.73708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4969100 2204700 2764400 0 0 0 2573100 1091000 1482000 0 0 0 2396000 1113700 1282300 0 0 0 0 0 0 8153 4318 8474 40569;40570 40564;40565 40565 2 EVEAQLPEKVEYVIK LHKVLRPFLLRRLKKEVEAQLPEKVEYVIK EVEAQLPEKVEYVIKCDMSALQRVLYRHMQ K E V I K C 1 0 0 0 0 1 4 0 0 1 1 2 0 0 1 0 0 0 1 3 0 0 15 1 1772.956 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 983 997 SMARCA4 Transcription activator BRG1 yes no 2;3 8.0621E-09 123.67 By MS/MS By matching By matching 3 1 1 0.71606 0.81954 24.146 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71606 0.81954 4.01 3 0 Median 1.2344 1.1542 NaN 1 0 Median 0.55698 0.58613 NaN 1 0 Median NaN NaN NaN 0 0 Median 48604000 26604000 22000000 0 0 0 0 0 0 45691000 25096000 20595000 1226500 565620 660890 1686400 942610 743830 0 0 0 8154 366 8475 40571;40572;40573;40574;40575 40566;40567;40568;40569 40569 4 EVEAVDSEYQLAR QFFIHPLMIRDAIDREVEAVDSEYQLARPS DREVEAVDSEYQLARPSDANRKEMLFGSLA R E V A R P 2 1 0 1 0 1 3 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1507.7155 O43847;G3V1R5;F5H7V1 O43847 307 319 NRD1 Nardilysin yes no 2 0.011335 53.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8155 1597 8476 40576 40570 40570 1 EVEEDEYK ELMNDIKPIWQRPSKEVEEDEYKAFYKSFS IWQRPSKEVEEDEYKAFYKSFSKESDDPMA K E V Y K A 0 0 0 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 8 0 1039.4346 P14625 P14625 349 356 HSP90B1 Endoplasmin yes yes 2 0.0029873 102.71 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 1 1 1 1.1946 1.0877 23.12 11 Median 1.0835 1.0423 3.8894 4 0 Linear 1.3226 1.149 8.9879 4 0 Median 1.0841 1.1298 NaN 1 0 Median 1.3315 1.1575 NaN 1 0 Median 2.1344 2.1911 NaN 1 0 Median NaN NaN NaN 0 0 Median 40982000 18564000 22417000 20687000 9922700 10764000 17378000 7436900 9941200 1374100 640030 734120 733860 301610 432250 808950 263060 545890 0 0 0 8156 2006 8477 40577;40578;40579;40580;40581;40582;40583;40584;40585;40586;40587 40571;40572;40573;40574;40575;40576;40577;40578;40579 40574 9 EVEEDEYKAFYK ELMNDIKPIWQRPSKEVEEDEYKAFYKSFS PSKEVEEDEYKAFYKSFSKESDDPMAYIHF K E V Y K S 1 0 0 1 0 0 4 0 0 0 0 2 0 1 0 0 0 0 2 1 0 0 12 1 1548.6984 P14625 P14625 349 360 HSP90B1 Endoplasmin yes yes 2;3 3.0048E-05 128.86 By MS/MS By matching By matching 5 1 1 1.0921 1.046 7.0464 7 Median 1.0221 1.046 5.189 5 1 Median 1.3612 1.1535 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1864 0.94932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98978000 42992000 55986000 95472000 41604000 53869000 3409100 1345500 2063600 0 0 0 96364 43057 53307 0 0 0 0 0 0 8157 2006 8478 40588;40589;40590;40591;40592;40593;40594 40580;40581;40582;40583;40584 40582 5 EVEEELATSGGQSPTGEQIPQFQQR TKFQSTYEELTGWLREVEEELATSGGQSPT GQSPTGEQIPQFQQRQKELKKEVMEHRLVL R E V Q R Q 1 1 0 0 0 5 5 3 0 1 1 0 0 1 2 2 2 0 0 1 0 0 25 0 2744.2889 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5684 5708 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 3.7318E-21 90.308 By MS/MS By matching 1 1 0.84299 0.76595 22.017 2 Median 0.67273 0.65552 NaN 1 0 Median 1.0563 0.89498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17715000 10226000 7488400 16336000 9657400 6678600 1378600 568780 809840 0 0 0 0 0 0 0 0 0 0 0 0 8158 1220 8479 40595;40596 40585;40586 40586 2 EVEEEPGIHSLK VRDAVVYPILVEFTREVEEEPGIHSLKHNK FTREVEEEPGIHSLKHNKRVLFSRMGPYPQ R E V L K H 0 0 0 0 0 0 4 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1365.6776 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 452 463 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 2.2183E-06 166.34 By MS/MS By MS/MS By matching 2 2 1 1.0136 0.90888 15.555 5 Median 0.90943 0.88332 5.9928 2 0 Median 1.044 0.88349 4.0061 2 0 Median 1.1571 1.2391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38413000 19061000 19352000 14498000 7345600 7152600 22400000 10791000 11609000 1514100 924070 590060 0 0 0 0 0 0 0 0 0 8159 101 8480 40597;40598;40599;40600;40601 40587;40588;40589;40590;40591;40592;40593;40594 40592 8 EVEELILTESK LSTKLKTLPDEVLTKEVEELILTESKKVLE VLTKEVEELILTESKKVLEDVTGEEFVLFM K E V S K K 0 0 0 0 0 0 4 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 11 0 1288.6762 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 170 180 API5 Apoptosis inhibitor 5 yes no 2 0.00012028 136.33 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.14 1.0104 5.0381 6 Median 1.0646 1.0114 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0535 1.0095 NaN 1 0 Median 1.1878 1.018 6.4048 3 0 Median NaN NaN NaN 0 0 Median 1.1304 0.95385 NaN 1 0 Median 188220000 88705000 99511000 7355300 3443600 3911800 0 0 0 149590000 71092000 78496000 30015000 13566000 16449000 0 0 0 1257300 602850 654480 8160 1103 8481 40602;40603;40604;40605;40606;40607 40595;40596;40597;40598;40599;40600;40601;40602;40603 40598 9 EVEELILTESKK LSTKLKTLPDEVLTKEVEELILTESKKVLE LTKEVEELILTESKKVLEDVTGEEFVLFMK K E V K K V 0 0 0 0 0 0 4 0 0 1 2 2 0 0 0 1 1 0 0 1 0 0 12 1 1416.7712 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 170 181 API5 Apoptosis inhibitor 5 yes no 2;3 1.0556E-14 188.04 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 1 2 6 2 1 1.0217 1.0521 30.178 15 Median 0.985 0.92468 25.934 3 0 Median 0.60342 0.56948 NaN 1 0 Median 1.0298 1.071 2.5139 2 0 Median 1.1794 1.1127 33.366 6 0 Median 1.2341 1.3164 4.0496 2 0 Median 0.91868 0.81877 NaN 1 0 Median 111810000 53264000 58543000 22931000 11690000 11241000 430800 271970 158820 69187000 32759000 36429000 11854000 4927200 6927200 6100300 2932800 3167600 1303200 683510 619650 8161 1103 8482 40608;40609;40610;40611;40612;40613;40614;40615;40616;40617;40618;40619;40620;40621;40622 40604;40605;40606;40607;40608;40609;40610;40611;40612;40613 40606 9 EVEERPAPTPWGSK GSCDFKCRIFSAYIKEVEERPAPTPWGSKM KEVEERPAPTPWGSKMPFGELMFESSSSCG K E V S K M 1 1 0 0 0 0 3 1 0 0 0 1 0 0 3 1 1 1 0 1 0 0 14 1 1581.7787 A0A1W2PNV4;C9JEY1;C9K057;O15143 A0A1W2PNV4 507 520 ARPC1B Actin-related protein 2/3 complex subunit 1B no no 3 0.034693 28.546 By MS/MS By MS/MS 1 1 0.63778 0.5561 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63778 0.5561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8678500 7265500 1413000 0 0 0 0 0 0 5126700 5126700 0 3551700 2138700 1413000 0 0 0 0 0 0 8162 334;1525 8483 40623;40624 40614;40615 40614 2 EVEIAYSDVAK AYSRDEFTNTCPSDKEVEIAYSDVAKRLTK PSDKEVEIAYSDVAKRLTK___________ K E V A K R 2 0 0 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 1 2 0 0 11 0 1222.6081 Q9Y696 Q9Y696 239 249 CLIC4 Chloride intracellular channel protein 4 yes yes 2 0.00016143 81.338 By MS/MS 1 1.1899 0.99462 NaN 1 Median NaN NaN NaN 0 0 Median 1.1899 0.99462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12637000 6880800 5755900 0 0 0 12637000 6880800 5755900 0 0 0 0 0 0 0 0 0 0 0 0 8163 4483 8484 40625 40616 40616 1 EVEIDQLNEQVTK QHVLFGKFAQIIQEKEVEIDQLNEQVTKLQ EKEVEIDQLNEQVTKLQQQLKITTDNKVIE K E V T K L 0 0 1 1 0 2 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1543.773 A0A0A0MRF6;Q99996;A0A0A0MRE9;H7BYL6 A0A0A0MRF6 2302 2314 AKAP9 A-kinase anchor protein 9 yes no 2 0.051123 40.244 By MS/MS 1 0.12722 0.12733 NaN 1 Median 0.12722 0.12733 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9464200 8233500 1230700 9464200 8233500 1230700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8164 158 8485 40626 40617 40617 1 EVEIVASSDSSISSK LSGDDSSTCIGILAKEVEIVASSDSSISSK EVEIVASSDSSISSKARGSNKVKIQPVAKY K E V S K A 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 6 0 0 0 2 0 0 15 0 1536.7519 Q6P2E9 Q6P2E9 97 111 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 5.2771E-13 100.55 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8165 3155 8486 40627 40618 40618 1 EVELVSE DSDTTKKKKKKKKAKEVELVSE________ KKKKKKAKEVELVSE_______________ K E V S E - 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 803.39126 O60832 O60832 508 514 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 1 0.018524 83.229 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1970400 0 0 0 0 0 0 0 0 1970400 0 0 0 0 0 0 0 0 0 0 0 8166 1634 8487 40628 40619 40619 1 EVEMGPFK PHLYNETKVRKELIREVEMGPFKHTVDDGL VRKELIREVEMGPFKHTVDDGLDIRKAAFE R E V F K H 0 0 0 0 0 0 2 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 8 0 935.44225 Q86VP6;A0A0C4DGH5 Q86VP6 1065 1072 CAND1 Cullin-associated NEDD8-dissociated protein 1 no no 2 0.010382 58.981 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.93237 0.85698 5.6053 5 Median 0.84122 0.82077 NaN 1 0 Median 1.0486 0.91421 NaN 1 0 Median 0.79152 0.85698 NaN 1 1 Median 1.0706 0.8969 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93237 0.80167 NaN 1 0 Median 11816000 5962100 5854100 4916200 2543200 2373000 2834600 1385700 1448900 3090000 1569600 1520500 812070 377080 434980 0 0 0 163280 86495 76784 8167 3288 8488 40629;40630;40631;40632;40633 40620;40621;40622;40623 40620 4 EVENLILENTQLLETK IGDVDEGADLLGMGREVENLILENTQLLET VENLILENTQLLETKNALNIVKNDLIAKVD R E V T K N 0 0 2 0 0 1 4 0 0 1 4 1 0 0 0 0 2 0 0 1 0 0 16 0 1885.0044 A0A087X2D8;O60271;H0YBE9 A0A087X2D8 395 410 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.00010907 69.451 By MS/MS By MS/MS 2 3 1.1985 1.0392 20.642 5 Plateau 1.1712 1.1507 6.1751 2 0 Median 1.1601 1.0201 20.845 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29239000 13064000 16175000 19631000 8651400 10980000 9607700 4412500 5195200 0 0 0 0 0 0 0 0 0 0 0 0 8168 134 8489 40634;40635;40636;40637;40638 40624;40625;40626;40627;40628 40624 5 EVENSEDPKFR SIARRANRILLVAKREVENSEDPKFREAVK VAKREVENSEDPKFREAVKAASDELSKTIS R E V F R E 0 1 1 1 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 11 1 1348.6259 P18206 P18206 770 780 VCL Vinculin yes yes 2;3 0.00055705 110.87 By MS/MS By MS/MS By matching 3 2 1 0.8327 0.82648 12.673 6 Median 0.82038 0.83356 3.9359 3 0 Median 1.0005 0.94178 24.136 2 0 Median 0.71571 0.81947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19402000 10205000 9197300 11338000 6022400 5315600 7386000 3784600 3601400 678320 398140 280190 0 0 0 0 0 0 0 0 0 8169 2057 8490 40639;40640;40641;40642;40643;40644 40629;40630;40631;40632;40633;40634;40635 40630 7 EVEPEPTEDKDLEADEEDTR EGDTQTEETQPSETKEVEPEPTEDKDLEAD PTEDKDLEADEEDTRKKDASDDLDDLNFFN K E V T R K 1 1 0 4 0 0 7 0 0 0 1 1 0 0 2 0 2 0 0 1 0 0 20 1 2345.003 P20042 P20042 43 62 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 1.9025E-19 118.37 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 0.71665 0.68238 23.242 7 Median 0.48371 0.48329 NaN 1 0 Median 0.58525 0.54027 2.9755 2 0 Median 0.79416 0.8536 8.8843 2 0 Median 0.76336 0.69701 3.0012 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89057000 50565000 38492000 3979700 2622000 1357700 4531700 2743800 1787900 37194000 20121000 17073000 43352000 25079000 18273000 0 0 0 0 0 0 8170 2072 8491 40645;40646;40647;40648;40649;40650;40651 40636;40637;40638;40639;40640;40641;40642;40643;40644 40643 9 EVEQALLGQTQYK E V Y K 1 0 0 0 0 3 2 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 13 0 1505.7726 REV__Q9P2D7 yes yes 2 0.0013887 54.608 By MS/MS By MS/MS By matching 3 6 1 0.67691 0.69966 210.21 9 Median 1.1661 1.1347 7.3909 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.020316 0.021473 203.25 5 1 Median 1.8129 1.5195 NaN 1 0 Median 39329000 34711000 4617700 4384700 1895600 2489200 0 0 0 0 0 0 0 0 0 33708000 32446000 1261900 1235900 369280 866660 + 8171 4557 8492 40652;40653;40654;40655;40656;40657;40658;40659;40660;40661 40645;40646;40647;40648 40647 4 EVEQFTQVAK CQQREGQNYQQNCIKEVEQFTQVAKAYQDR QNCIKEVEQFTQVAKAYQDRYQDLGAYSSA K E V A K A 1 0 0 0 0 2 2 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1177.5979 O96000;H3BPJ9 O96000 122 131 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 2 0.00039662 90.657 By MS/MS By MS/MS By MS/MS 1 1 1 0.99573 0.92912 29.808 3 Median 0.99573 0.92912 NaN 1 0 Median 1.6439 1.3923 NaN 1 0 Median 0.82663 0.77836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19750000 9768900 9980600 11277000 5478900 5797800 2296900 748820 1548100 6175900 3541200 2634700 0 0 0 0 0 0 0 0 0 8172 1223 8493 40662;40663;40664 40649;40650;40651 40651 3 EVEQLIK TRENGKTVIRVLKQKEVEQLIKKHEEEEAK VIRVLKQKEVEQLIKKHEEEEAKAEREKKE K E V I K K 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 857.48583 P25789;H0YN18 P25789 232 238 PSMA4 Proteasome subunit alpha type-4 yes no 2 0.01526 72.021 By MS/MS 2 1.1634 0.99208 11.218 2 Median NaN NaN NaN 0 0 Median 1.1634 0.99208 11.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2646500 1341100 1305400 0 0 0 2646500 1341100 1305400 0 0 0 0 0 0 0 0 0 0 0 0 8173 2138 8494 40665;40666 40652 40652 1 EVESLEK PFQLGNYCNFYVMHREVESLEKNMAILDPP CNFYVMHREVESLEKNMAILDPPDADHLYS R E V E K N 0 0 0 0 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 7 0 832.41781 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 425 431 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.020057 60.788 By MS/MS By matching 1 1 0.89788 0.85634 2.3197 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81163 0.87051 NaN 1 0 Median 0.99329 0.84241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098700 1085100 1013600 0 0 0 0 0 0 1620200 851290 768930 478520 233840 244680 0 0 0 0 0 0 8174 3331 8495 40667;40668 40653;40654 40653 2 EVESMGAHLNAYSTR AFKGTKNRPGSALEKEVESMGAHLNAYSTR EVESMGAHLNAYSTREHTAYYIKALSKDLP K E V T R E 2 1 1 0 0 0 2 1 1 0 1 0 1 0 0 2 1 0 1 1 0 0 15 0 1663.7624 P31930 P31930 112 126 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2;3 5.2171E-26 127.17 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.627 1.3843 17.933 6 Median 1.3508 1.2648 NaN 1 0 Median 1.7717 1.5079 20.85 3 1 Median 1.2661 1.2481 NaN 1 0 Median 1.6394 1.4113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87399000 35811000 51588000 39611000 17419000 22192000 20047000 7077800 12969000 12190000 5684800 6505400 15551000 5629400 9921700 0 0 0 0 0 0 8175 2205 8496 40669;40670;40671;40672;40673;40674;40675 40655;40656;40657;40658;40659;40660;40661;40662;40663;40664;40665 40657 11 EVESPYEVHDYIR TANNLDVPTFVSFLKEVESPYEVHDYIRAY LKEVESPYEVHDYIRAYLGDTSEAKEFAKQ K E V I R A 0 1 0 1 0 0 3 0 1 1 0 0 0 0 1 1 0 0 2 2 0 0 13 0 1634.7577 Q6Y7W6;I1E4Y6 Q6Y7W6 1163 1175 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 0.00021298 65.295 By MS/MS By matching 1 1 1.0768 0.95432 13.063 2 Median 1.1132 1.0467 NaN 1 0 Median 1.0415 0.87012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10365000 5232500 5132900 9181800 4702800 4479000 1183600 529660 653970 0 0 0 0 0 0 0 0 0 0 0 0 8176 3192 8497 40676;40677 40666;40667 40667 2 EVETHANNSSIELEK KLKAEMDEHRLKLQKEVETHANNSSIELEK EVETHANNSSIELEKLAKKQVAIIEKEAKV K E V E K L 1 0 2 0 0 0 4 0 1 1 1 1 0 0 0 2 1 0 0 1 0 0 15 0 1698.8061 Q9H2K8;G3V1Q8 Q9H2K8 496 510 TAOK3 Serine/threonine-protein kinase TAO3 yes no 3 0.042313 22.475 By MS/MS 1 0.72449 0.6082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72449 0.6082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1314800 699880 614950 0 0 0 0 0 0 0 0 0 1314800 699880 614950 0 0 0 0 0 0 8177 3944 8498 40678 40668 40668 1 EVETLYQCQGNK IIEKQAGHSRSRVFREVETLYQCQGNKFHL VFREVETLYQCQGNKFHLSPHPEAKALQ__ R E V N K F 0 0 1 0 1 2 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 12 0 1467.6664 E9PMM8;E9PIA0;A0A499FJS1;A0A499FJN1;A0A499FIS5;Q9BUB5 E9PMM8 82 93 MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 yes no 2 0.00061653 67.507 By matching By MS/MS By MS/MS 1 1 1 1.0374 0.99884 16.451 3 Median 0.90275 0.83487 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0374 0.99884 NaN 1 0 Median 1.2897 1.1596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45040000 21375000 23665000 16161000 8099700 8061300 0 0 0 17468000 8174500 9293100 11412000 5101200 6310400 0 0 0 0 0 0 8178 474 8499 40679;40680;40681 40669;40670;40671 40671 3 EVEVEVESMDK SEEATLFTKELVLQREVEVEVESMDKAGNF VLQREVEVEVESMDKAGNFIGWLHIDGANL R E V D K A 0 0 0 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 11 0 1292.5806 Q7KZF4 Q7KZF4 593 603 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 1.8931E-12 163.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 3 1 1.1581 1.1093 39.12 12 Median 1.043 1.0192 2.4405 2 0 Median 1.1796 1.0049 17.703 3 0 Median 1.0845 1.1849 5.6939 3 2 Median 1.2437 1.0904 8.424 3 0 Plateau NaN NaN NaN 0 0 Median 4.6458 3.9925 NaN 1 0 Median 72458000 33257000 39202000 18874000 9632100 9241800 9224200 4256300 4967900 21567000 10838000 10729000 17078000 7564300 9513300 0 0 0 5715400 965620 4749800 8179 3214 8500;8501 40682;40683;40684;40685;40686;40687;40688;40689;40690;40691;40692;40693 40672;40673;40674;40675;40676;40677;40678;40679;40680;40681;40682;40683;40684 40680 1684 13 EVEVIGGADKYHSVCR CFREAAYTKRLGTEKEVEVIGGADKYHSVC VEVIGGADKYHSVCRLCYFKKASGQPAGPD K E V C R L 1 1 0 1 1 0 2 2 1 1 0 1 0 0 0 1 0 0 1 3 0 0 16 1 1817.873 P04183 P04183 171 186 TK1 Thymidine kinase, cytosolic yes yes 3 6.1744E-07 87.66 By MS/MS 1 1.0227 0.9555 NaN 1 Median NaN NaN NaN 0 0 Median 1.0227 0.9555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1933300 934820 998460 0 0 0 1933300 934820 998460 0 0 0 0 0 0 0 0 0 0 0 0 8180 1847 8502 40694 40685 40685 1 EVEVTLVR SSETSHSVPEAKGSKEVEVTLVRKDKGRQK PEAKGSKEVEVTLVRKDKGRQKTTRSRRKR K E V V R K 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 8 0 943.53385 Q96T58 Q96T58 2320 2327 SPEN Msx2-interacting protein yes yes 2 0.0050995 77.741 By matching By MS/MS By MS/MS 1 1 2 0.85987 0.83484 31.291 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76313 0.78112 NaN 1 0 Median 0.87046 0.76878 NaN 1 1 Median 1.1089 1.1557 36.586 2 0 Median NaN NaN NaN 0 0 Median 15910000 8923800 6986600 0 0 0 0 0 0 8980600 5334600 3645900 908900 518590 390310 6020900 3070600 2950300 0 0 0 8181 3741 8503 40695;40696;40697;40698 40686;40687 40686 2 EVEYDELSAALK FDALIKDVFPGIELKEVEYDELSAALKQVF ELKEVEYDELSAALKQVFEEANYEIIPNQI K E V L K Q 2 0 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1365.6664 Q8NCM8 Q8NCM8 1933 1944 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.0021859 77.379 By MS/MS 1 2.4677 2.4717 NaN 1 Median 2.4677 2.4717 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11261000 2877500 8383500 11261000 2877500 8383500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8182 3418 8504 40699 40688 40688 1 EVFAEAVR VRYLECSALQQDGVKEVFAEAVRAVLNPTP LQQDGVKEVFAEAVRAVLNPTPIKRGRSCI K E V V R A 2 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 919.47633 P84095 P84095 167 174 RHOG Rho-related GTP-binding protein RhoG yes yes 2 0.0084927 62.659 By MS/MS 1 1.2633 1.0484 NaN 1 Median NaN NaN NaN 0 0 Median 1.2633 1.0484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2813600 1235700 1577900 0 0 0 2813600 1235700 1577900 0 0 0 0 0 0 0 0 0 0 0 0 8183 2667 8505 40700 40689;40690 40689 2 EVFEDAAEIR LAKNLPYKVTQDELKEVFEDAAEIRLVSKD QDELKEVFEDAAEIRLVSKDGKSKGIAYIE K E V I R L 2 1 0 1 0 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1177.5615 P19338;H7BY16 P19338 411 420 NCL Nucleolin yes no 2 0.00014445 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 5 1 4 1.1734 1.0655 27.379 21 Median 1.1095 1.0536 11.77 3 0 Median 1.2166 1.026 29.269 5 0 Median 1.0743 1.1297 54.006 3 0 Median 1.2424 1.0832 7.9788 5 0 Median 1.1734 1.1724 NaN 1 0 Median 1.2192 0.98839 9.5469 4 0 Median 457580000 203860000 253720000 78756000 36693000 42063000 89276000 39522000 49754000 130040000 58575000 71463000 90870000 39409000 51461000 40192000 17378000 22814000 28448000 12284000 16164000 8184 2063 8506 40701;40702;40703;40704;40705;40706;40707;40708;40709;40710;40711;40712;40713;40714;40715;40716;40717;40718;40719;40720;40721 40691;40692;40693;40694;40695;40696;40697;40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709;40710;40711;40712;40713;40714;40715;40716;40717;40718;40719;40720;40721;40722;40723;40724;40725 40692 35 EVFEMATR FGYMECSAKTKDGVREVFEMATRAALQARR KTKDGVREVFEMATRAALQARRGKKKSGCL R E V T R A 1 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 8 0 981.45897 P61586;Q5JR08;P08134 P61586 169 176 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.0023059 122.13 By MS/MS By MS/MS By matching By MS/MS By matching 5 6 1 1 1 1.342 1.1367 7.2598 14 Median 1.0971 1.07 11.344 5 0 Median 1.3594 1.1396 3.9491 6 0 Median 1.2038 1.146 NaN 1 0 Median 1.4998 1.2412 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4369 1.1178 NaN 1 0 Median 263680000 122910000 140770000 186350000 89350000 96998000 71934000 31373000 40561000 3280500 1354300 1926200 1856300 743810 1112400 0 0 0 261240 90033 171210 8185 2559 8507;8508 40722;40723;40724;40725;40726;40727;40728;40729;40730;40731;40732;40733;40734;40735 40726;40727;40728;40729;40730;40731;40732;40733;40734;40735;40736;40737;40738;40739;40740;40741 40734 1234 16 EVFGSGTACQVCPVHR TMKQLLRALEEGRVREVFGSGTACQVCPVH VFGSGTACQVCPVHRILYKDRNLHIPTMEN R E V H R I 1 1 0 0 2 1 1 2 1 0 0 0 0 1 1 1 1 0 0 3 0 0 16 0 1802.8192 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 334 349 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 3 0.0028285 43.184 By MS/MS 1 0.83975 0.70692 NaN 1 Median NaN NaN NaN 0 0 Median 0.83975 0.70692 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2025700 1327800 697860 0 0 0 2025700 1327800 697860 0 0 0 0 0 0 0 0 0 0 0 0 8186 1543 8509 40736 40742 40742 1 EVFGTFGIPFLLR DKENEMLVTVAHFHKEVFGTFGIPFLLRIH HKEVFGTFGIPFLLRIHQGEHFREVMKRIQ K E V L R I 0 1 0 0 0 0 1 2 0 1 2 0 0 3 1 0 1 0 0 1 0 0 13 0 1494.8235 Q93009 Q93009 998 1010 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.00073699 66.435 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 0.95715 0.95454 13.961 10 Median 0.9461 0.92774 14.276 4 0 Median NaN NaN NaN 0 0 Median 0.94145 1.0008 8.5211 4 0 Median 1.1635 0.9926 NaN 1 0 Median 1.1153 1.1914 NaN 1 0 Median NaN NaN NaN 0 0 Median 16004000 8012500 7991900 12082000 6138900 5943100 0 0 0 1643800 766260 877560 1037700 491940 545800 1240900 615430 625490 0 0 0 8187 3574 8510 40737;40738;40739;40740;40741;40742;40743;40744;40745;40746 40743;40744;40745;40746;40747;40748;40749;40750;40751 40744 9 EVFLVMPTGGGK RPLQLETINVTMAGKEVFLVMPTGGGKSLC AGKEVFLVMPTGGGKSLCYQLPALCSDGFT K E V G K S 0 0 0 0 0 0 1 3 0 0 1 1 1 1 1 0 1 0 0 2 0 0 12 0 1233.6427 P46063;F8WA66;F8WD97;F5H2L2 P46063 108 119 RECQL ATP-dependent DNA helicase Q1 yes no 2 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 0.85273 0.82143 56.328 6 Median 0.67151 0.63259 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85273 0.85278 15.308 2 1 Median 1.0915 0.92705 7.0939 2 1 Median 0.22376 0.22125 NaN 1 0 Median NaN NaN NaN 0 0 Median 71236000 38147000 33089000 10242000 6080400 4161800 0 0 0 47889000 25709000 22180000 12370000 5835000 6535300 734450 522940 211510 0 0 0 8188 2337 8511;8512 40747;40748;40749;40750;40751;40752;40753 40752;40753;40754;40755;40756;40757;40758;40759;40760;40761 40756 1063 10 EVFQTASER ELKDFLPSLWASIRREVFQTASERVEAEGL WASIRREVFQTASERVEAEGLAALHSLTAC R E V E R V 1 1 0 0 0 1 2 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 9 0 1065.5091 Q96T76;H7C1W5 Q96T76 308 316 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.0056451 70.919 By MS/MS 1 0.097322 0.084109 NaN 1 Median NaN NaN NaN 0 0 Median 0.097322 0.084109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9132100 8361900 770210 0 0 0 9132100 8361900 770210 0 0 0 0 0 0 0 0 0 0 0 0 8189 3742 8513 40754 40762 40762 1 EVFSMAGVVVR FVANLDYKVGWKKLKEVFSMAGVVVRADIL KKLKEVFSMAGVVVRADILEDKDGKSRGIG K E V V R A 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 4 0 0 11 0 1192.6274 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0QZM1 A0A087X0X3 222 232 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.00015996 81.594 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 3 2 1 1.2113 1.0562 15.33 11 Median 1.3637 1.3498 4.4971 2 0 Median 1.1779 1.0447 9.556 2 0 Median 0.88788 0.89649 NaN 1 0 Median 1.2113 1.1235 10.911 3 0 Plateau 0.94131 0.94606 15.572 2 0 Median 1.4152 1.1524 NaN 1 0 Median 67829000 33619000 34209000 5397500 2085200 3312400 5243200 2406500 2836700 27132000 14096000 13036000 1508300 666040 842280 26874000 13700000 13174000 1673700 665820 1007900 8190 116;1423 8514 40755;40756;40757;40758;40759;40760;40761;40762;40763;40764;40765 40763;40764;40765;40766;40767;40768;40769;40770 40765 8 EVGAFGTPVINLGTR AHAGCMIGNSSCGVREVGAFGTPVINLGTR EVGAFGTPVINLGTRQIGRETGENVLHVRD R E V T R Q 1 1 1 0 0 0 1 3 0 1 1 0 0 1 1 0 2 0 0 2 0 0 15 0 1529.8202 Q9Y223 Q9Y223 307 321 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase yes yes 2 0.00011603 69.01 By MS/MS 1 1.0919 1.0508 NaN 1 Median 1.0919 1.0508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4240900 1943000 2297900 4240900 1943000 2297900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8191 4366 8515 40766 40771 40771 1 EVGEHLVSIK KRLPNNHIGISFIPREVGEHLVSIKKNGNH SFIPREVGEHLVSIKKNGNHVANSPVSIMV R E V I K K 0 0 0 0 0 0 2 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1109.6081 O75369;E7EN95 O75369 1970 1979 FLNB Filamin-B yes no 2 3.9021E-05 140.11 By MS/MS By MS/MS 3 1 1.1279 1.0612 4.2339 3 Median 1.1149 1.0942 4.3305 2 0 Median 1.1646 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44321000 18658000 25662000 8428800 3529600 4899200 35892000 15129000 20763000 0 0 0 0 0 0 0 0 0 0 0 0 8192 1664 8516 40767;40768;40769;40770 40772;40773;40774;40775 40775 4 EVGEHLVSIKK KRLPNNHIGISFIPREVGEHLVSIKKNGNH FIPREVGEHLVSIKKNGNHVANSPVSIMVV R E V K K N 0 0 0 0 0 0 2 1 1 1 1 2 0 0 0 1 0 0 0 2 0 0 11 1 1237.703 O75369;E7EN95 O75369 1970 1980 FLNB Filamin-B yes no 2;3 0.00023321 92.051 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 1 3 1.1493 1.1982 13.915 11 Median 1.0753 1.1093 16.23 4 1 Median 1.1452 1.0968 7.5166 3 0 Median 0.9005 1.0372 NaN 1 0 Median 1.3997 1.422 10.029 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72014000 34011000 38004000 21871000 10164000 11706000 43793000 21137000 22656000 3546800 1581700 1965100 2803600 1127500 1676100 0 0 0 0 0 0 8193 1664 8517 40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781;40782 40776;40777;40778;40779;40780;40781;40782;40783;40784;40785;40786;40787;40788;40789;40790 40788 15 EVGEHVVSVR KRLPNRHIGISFTPKEVGEHVVSVRKSGKH SFTPKEVGEHVVSVRKSGKHVTNSPFKILV K E V V R K 0 1 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 4 0 0 10 0 1109.5829 Q14315 Q14315 2009 2018 FLNC Filamin-C yes yes 2 0.0075902 50.473 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.0023 0.83479 36.792 6 Median 1.0702 1.0839 NaN 1 0 Median 1.0887 0.87283 15.045 3 1 Median NaN NaN NaN 0 0 Median 0.82144 0.71493 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.47939 0.39955 NaN 1 0 Median 26086000 13180000 12906000 2823400 1486500 1336900 20346000 10074000 10272000 0 0 0 1338500 717760 620700 0 0 0 1577600 900960 676640 8194 2871 8518 40783;40784;40785;40786;40787;40788;40789 40791;40792;40793;40794;40795;40796;40797 40791 7 EVGEHVVSVRK KRLPNRHIGISFTPKEVGEHVVSVRKSGKH FTPKEVGEHVVSVRKSGKHVTNSPFKILVG K E V R K S 0 1 0 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 0 4 0 0 11 1 1237.6779 Q14315 Q14315 2009 2019 FLNC Filamin-C yes yes 3 0.044724 15.202 By MS/MS 2 1.3036 1.3213 2.9805 2 Median 1.3036 1.3213 2.9805 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 527250 260050 267200 527250 260050 267200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8195 2871 8519 40790;40791 40798 40798 1 EVGETLLYYGCR IGFIQERAWLRQQGKEVGETLLYYGCRRSD QGKEVGETLLYYGCRRSDEDYLYREELAQF K E V C R R 0 1 0 0 1 0 2 2 0 0 2 0 0 0 0 0 1 0 2 1 0 0 12 0 1458.6813 P16435;H0Y4R2;E7EMD0 P16435 556 567 POR NADPH--cytochrome P450 reductase yes no 3 0.027204 21.631 By MS/MS 1 0.70893 0.62382 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70893 0.62382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4304900 1967200 2337700 0 0 0 0 0 0 0 0 0 4304900 1967200 2337700 0 0 0 0 0 0 8196 2030 8520 40792 40799 40799 1 EVGIPPEQSLETAK GRDITYFIQQLLRDREVGIPPEQSLETAKA REVGIPPEQSLETAKAVKERYSYVCPDLVK R E V A K A 1 0 0 0 0 1 3 1 0 1 1 1 0 0 2 1 1 0 0 1 0 0 14 0 1496.7722 B4DXW1;P61158;Q9P1U1;A0A0A0MTI9;H7C4J1;C9IZN3;Q9C0K3 B4DXW1 161 174 ACTR3;ACTR3B;ACTR3C Actin-related protein 3;Actin-related protein 3B;Actin-related protein 3C yes no 2 0.037624 53.569 By MS/MS By matching 1 1 0.74375 0.69476 0.42075 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71186 0.6927 NaN 1 0 Median 0.77707 0.69683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14145000 7811800 6333300 0 0 0 0 0 0 8147200 4466000 3681200 5997900 3345800 2652100 0 0 0 0 0 0 8197 607 8521 40793;40794 40800 40800 0 EVGKDVSDEKLR LANQEVLVWLTQLQKEVGKDVSDEKLRDYI LQKEVGKDVSDEKLRDYIWNTLNSGRVVPG K E V L R D 0 1 0 2 0 0 2 1 0 0 1 2 0 0 0 1 0 0 0 2 0 0 12 2 1373.7151 O75390;B4DJV2;A0A0C4DGI3 O75390 318 329 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2;3 0.00016848 76.522 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 0.97037 1.1258 29.032 7 Median 0.82481 0.92166 NaN 1 0 Median 1.3719 1.4058 40.49 3 1 Median 0.95321 1.1059 2.5239 2 0 Median 1.4607 1.5947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12789000 6350800 6438100 3480300 1891900 1588500 5707600 2828400 2879200 2056700 1020800 1036000 1544200 609720 934500 0 0 0 0 0 0 8198 594 8522 40795;40796;40797;40798;40799;40800;40801 40801;40802;40803;40804;40805;40806 40804 6 EVGSIIGK GLNVTLTIRLLMHGKEVGSIIGKKGESVKK RLLMHGKEVGSIIGKKGESVKKMREESGAR K E V G K K 0 0 0 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 801.45962 Q15365;F8VTZ0;H3BSP4;C9K0A2;F8WC71;C9IZV9;C9J7A9;C9JSA6;C9J5V4;C9JTY5;C9JZY3;C9J0A4;P57723;H3BRU6;F8VZX2;F8W0G4;F8W1G6;J3QT27;E9PFP8;P57721;Q15366 Q15366 24 31 PCBP1;PCBP2;PCBP4;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 4;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 0.0064162 71.342 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 3 2 1.1432 1.0658 18.9 15 Median 1.2377 1.1561 NaN 1 0 Median 1.2292 1.0728 5.7898 4 0 Median 1.1012 1.1117 5.8707 5 1 Median 1.2161 1.0386 37.432 3 0 Median NaN NaN NaN 0 0 Median 1.0387 0.84786 20.229 2 0 Median 121110000 57908000 63207000 5892500 2667700 3224700 15486000 6883800 8601800 47892000 23295000 24597000 24729000 12030000 12699000 0 0 0 27115000 13031000 14084000 8199 2942;1077;2941 8523 40802;40803;40804;40805;40806;40807;40808;40809;40810;40811;40812;40813;40814;40815;40816 40807;40808;40809;40810;40811;40812;40813;40814;40815;40816;40817;40818;40819;40820 40815 14 EVGSPPLDPTER AYLESSEALYNQYMKEVGSPPLDPTERFLP YMKEVGSPPLDPTERFLPEEEKLTEQERSK K E V E R F 0 1 0 1 0 0 2 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 12 0 1295.6357 A0A1B0GUA3;Q96EK5;A0A1B0GUH6;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GV79;A0A1B0GW21 A0A1B0GUA3 200 211 KIAA1279;KIF1BP KIF1-binding protein yes no 2 0.0046806 63.283 By MS/MS By MS/MS 2 1 0.74369 0.67566 10.199 3 Median 0.67482 0.64866 14.034 2 2 Median 0.78004 0.67566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13529000 7223500 6305200 8846500 4984700 3861900 4682200 2238900 2443300 0 0 0 0 0 0 0 0 0 0 0 0 8200 323 8524 40817;40818;40819 40821;40822;40823 40821 3 EVGVYEALK QYPDVNHAKVKLQGKEVGVYEALKDDSWLK VKLQGKEVGVYEALKDDSWLKGEFVTTVQQ K E V L K D 1 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1006.5335 P40925;B9A041;B8ZZ51 P40925 206 214 MDH1 Malate dehydrogenase, cytoplasmic yes no 2 0.01317 45.68 By matching By MS/MS 1 1 1.2157 1.0786 0.67611 2 Median 1.1575 1.0838 NaN 1 0 Median 1.2768 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16916000 7644500 9272000 7343200 4032200 3311000 9573300 3612300 5961000 0 0 0 0 0 0 0 0 0 0 0 0 8201 2291 8525 40820;40821 40824 40824 1 EVGVYEALKDDSWLK QYPDVNHAKVKLQGKEVGVYEALKDDSWLK EVGVYEALKDDSWLKGEFVTTVQQRGAAVI K E V L K G 1 0 0 2 0 0 2 1 0 0 2 2 0 0 0 1 0 1 1 2 0 0 15 1 1750.8778 P40925;B9A041;B8ZZ51 P40925 206 220 MDH1 Malate dehydrogenase, cytoplasmic yes no 3 0.0001046 66.246 By MS/MS By matching 1 1 0.98081 0.9523 14.27 2 Median NaN NaN NaN 0 0 Median 0.95668 0.8609 NaN 1 0 Median 1.0056 1.0534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43334000 22570000 20764000 0 0 0 39250000 20631000 18619000 4084400 1939200 2145300 0 0 0 0 0 0 0 0 0 8202 2291 8526 40822;40823 40825;40826 40826 2 EVHGMAQPSQNNYWK SVTGEQYGRPISGQKEVHGMAQPSQNNYWK EVHGMAQPSQNNYWKAMEGIFMKPSELLKA K E V W K A 1 0 2 0 0 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 0 0 15 0 1787.805 Q99470 Q99470 175 189 SDF2 Stromal cell-derived factor 2 yes yes 3 1.2714E-07 86.756 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1.1044 0.99553 16.194 6 Median 0.77076 0.71834 NaN 1 1 Median 1.1858 1.0001 NaN 1 0 Median 0.89353 0.83738 NaN 1 0 Median 1.3268 1.0982 NaN 1 0 Median 1.0352 1.0608 NaN 1 0 Median 1.1784 0.991 NaN 1 0 Median 29455000 14880000 14575000 9056700 4792400 4264300 3395900 1594100 1801800 11334000 5781900 5551700 1796200 731080 1065100 2869000 1569400 1299600 1003300 410860 592400 8203 3746 8527 40824;40825;40826;40827;40828;40829;40830 40827;40828;40829;40830;40831;40832;40833;40834 40827 8 EVHTQAENAEFMR SMPQDLSEALKEATKEVHTQAENAEFMRNF TKEVHTQAENAEFMRNFQKGQVTRDGFKLV K E V M R N 2 1 1 0 0 1 3 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 13 0 1560.6991 B1AHA8;P09601 B1AHA8 23 35 HMOX1 Heme oxygenase 1 yes no 3 0.00091205 44.511 By MS/MS 2 1.2832 1.0864 10.941 2 Median NaN NaN NaN 0 0 Median 1.2832 1.0864 10.941 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3112800 1197600 1915300 0 0 0 3112800 1197600 1915300 0 0 0 0 0 0 0 0 0 0 0 0 8204 562 8528 40831;40832 40835;40836 40836 2 EVIAEEEPPTVTEPLPENR VEAEAALLTEEVLEREVIAEEEPPTVTEPL EEEPPTVTEPLPENREARGDTVVSEAELTP R E V N R E 1 1 1 0 0 0 6 0 0 1 1 0 0 0 4 0 2 0 0 2 0 0 19 0 2148.0586 Q02952 Q02952 940 958 AKAP12 A-kinase anchor protein 12 yes yes 2 7.2648E-49 216.84 By MS/MS By MS/MS 2 2 0.62071 0.52458 13.848 4 Median 0.54936 0.52487 23.587 2 0 Median 0.62071 0.52458 4.3501 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39602000 25149000 14453000 34004000 21558000 12446000 5597900 3590300 2007600 0 0 0 0 0 0 0 0 0 0 0 0 8205 2705 8529 40833;40834;40835;40836 40837;40838;40839;40840;40841;40842;40843;40844 40837 8 EVIATVIR LYTGLEYDLSRENHREVIATVIRKLLNHIL LSRENHREVIATVIRKLLNHILDNSEDDTK R E V I R K 1 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 8 0 899.54402 Q14997 Q14997 866 873 PSME4 Proteasome activator complex subunit 4 yes yes 2 0.058517 52.403 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8206 2906 8530 40837 40845 40845 1 EVIDFAR RDGASSRGAREFVEREVIDFARRNPGVVIY GAREFVEREVIDFARRNPGVVIYVNSRPCC R E V A R R 1 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 848.43922 H0Y6Y8;B1AL05;Q8N983;H0YBU8 H0Y6Y8 47 53 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.024489 55.441 By MS/MS 1 1.5805 1.3111 NaN 1 Median NaN NaN NaN 0 0 Median 1.5805 1.3111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4588400 1794800 2793700 0 0 0 4588400 1794800 2793700 0 0 0 0 0 0 0 0 0 0 0 0 8207 570 8531 40838 40846 40846 1 EVIDKYTAVVK KKLGEKYHKKKAIVKEVIDKYTAVVKMIDS AIVKEVIDKYTAVVKMIDSGDKLKLDQTHL K E V V K M 1 0 0 1 0 0 1 0 0 1 0 2 0 0 0 0 1 0 1 3 0 0 11 1 1263.7075 O60870;S4R357 O60870 307 317 KIN DNA/RNA-binding protein KIN17 yes no 2;3 0.0013696 77.533 By MS/MS 2 0.97795 0.92888 17.526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97795 0.92888 17.526 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13375000 6545400 6830100 0 0 0 0 0 0 0 0 0 13375000 6545400 6830100 0 0 0 0 0 0 8208 1636 8532 40839;40840 40847;40848 40847 1 EVIDLLKPDQVEGIQK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ VIDLLKPDQVEGIQKSGTKKLKTETDKENA R E V Q K S 0 0 0 2 0 2 2 1 0 2 2 2 0 0 1 0 0 0 0 2 0 0 16 1 1823.004 Q86UP2 Q86UP2 250 265 KTN1 Kinectin yes yes 2;3 3.728E-19 134.2 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.9394 0.98424 19.833 8 Median 0.88314 0.85188 37.032 2 1 Median 0.94654 0.89505 26.904 2 0 Median 0.85353 0.98424 2.4071 2 0 Median 1.103 1.0383 13.064 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43302000 21606000 21696000 24474000 12038000 12436000 1934900 1110900 823940 16379000 8208100 8171400 513760 249150 264610 0 0 0 0 0 0 8209 3280 8533 40841;40842;40843;40844;40845;40846;40847;40848 40849;40850;40851;40852;40853;40854 40851 6 EVIDMELSALR SFLDIFPKVTCRPPKEVIDMELSALRSDTE RPPKEVIDMELSALRSDTEPGMDLWEFCSE K E V L R S 1 1 0 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1274.654 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2186 2196 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.049703 15.539 By MS/MS By matching By matching 1 1 1 1.4146 1.1837 4.3853 3 Median NaN NaN NaN 0 0 Median 1.4146 1.1837 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3969 1.1727 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4764 1.2706 NaN 1 0 Median 4618900 1781300 2837600 0 0 0 3237000 1241300 1995700 0 0 0 521770 216400 305370 0 0 0 860190 323580 536610 8210 189 8534 40849;40850;40851 40855 40855 1 EVIELPLTNPELFQR YSEIGGLSEQIRELREVIELPLTNPELFQR EVIELPLTNPELFQRVGIIPPKGCLLYGPP R E V Q R V 0 1 1 0 0 1 3 0 0 1 3 0 0 1 2 0 1 0 0 1 0 0 15 0 1796.9672 A0A087X2I1;P62333;H0YJC0;H0YJS8 A0A087X2I1 161 175 PSMC6 26S protease regulatory subunit 10B yes no 2 2.2265E-09 102.4 By MS/MS By MS/MS 1 1 0.79785 0.74384 3.9557 2 Median 0.76776 0.76494 NaN 1 0 Median 0.82912 0.72333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14420000 7803200 6616600 3370500 1806100 1564400 11049000 5997100 5052100 0 0 0 0 0 0 0 0 0 0 0 0 8211 138 8535 40852;40853 40856;40857;40858;40859;40860;40861 40858 6 EVIELPVKHPELFEALGIAQPK YEMIGGLDKQIKEIKEVIELPVKHPELFEA KHPELFEALGIAQPKGVLLYGPPGTGKTLL K E V P K G 2 0 0 0 0 1 4 1 1 2 3 2 0 1 3 0 0 0 0 2 0 0 22 1 2456.3679 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRW1;J3QRR3;J3QSE0 P62195 163 184 PSMC5 26S protease regulatory subunit 8 yes no 3 4.2664E-05 37.112 By MS/MS By matching 2 1 0.72691 0.65449 9.5097 3 Median NaN NaN NaN 0 0 Median 0.68713 0.63222 4.894 2 0 Median NaN NaN NaN 0 0 Median 0.776 0.73706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19472000 10751000 8721100 0 0 0 16553000 9174100 7378400 0 0 0 2919100 1576500 1342700 0 0 0 0 0 0 8212 2572 8536 40854;40855;40856 40862;40863;40864 40864 3 EVIEYAR SYNPVTHIYTAQDVKEVIEYARLRGIRVLA IYTAQDVKEVIEYARLRGIRVLAEFDTPGH K E V A R L 1 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 878.44978 H3BS10;H3BP20;P06865;H3BU85;H3BTD4 H3BS10 241 247 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.028199 57.463 By MS/MS By MS/MS 1 1 1.3783 1.2653 13.735 2 Median 1.1507 1.1482 NaN 1 0 Median 1.6509 1.3943 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9123600 3206000 5917700 2490000 1065000 1425000 6633600 2141000 4492600 0 0 0 0 0 0 0 0 0 0 0 0 8213 1218 8537 40857;40858 40865;40866 40865 2 EVIPVNVPEAQEEMK VIDPVAPRYVALLKKEVIPVNVPEAQEEMK EVIPVNVPEAQEEMKEVAKHPKNPEVGLKP K E V M K E 1 0 1 0 0 1 4 0 0 1 0 1 1 0 2 0 0 0 0 3 0 0 15 0 1710.8498 P07814;V9GYZ6 P07814 514 528 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 4.6777E-06 87.001 By MS/MS By matching By matching 1 2 1 0.73728 0.6886 21.228 4 Median 0.78266 0.75376 NaN 1 0 Median 0.7773 0.6966 14.42 2 0 Median NaN NaN NaN 0 0 Median 0.53847 0.48741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24883000 12802000 12081000 18913000 9617200 9295800 5417700 2835400 2582300 0 0 0 551920 349490 202430 0 0 0 0 0 0 8214 1892 8538 40859;40860;40861;40862 40867;40868 40868 2 EVIQALPK DVRFLIPVLNGLEKKEVIQALPKLIKLNPI LNGLEKKEVIQALPKLIKLNPIVVKEVFNR K E V P K L 1 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 896.53312 Q92797;A0A087WUE9 Q92797 902 909 SYMPK Symplekin yes no 2 0.05728 49.358 By MS/MS 1 0.71981 0.78091 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71981 0.78091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4833300 2523600 2309600 0 0 0 0 0 0 4833300 2523600 2309600 0 0 0 0 0 0 0 0 0 8215 3558 8539 40863 40869 40869 1 EVIQEWNLTNIK GITKECVMRVDEKTKEVIQEWNLTNIKRWA KTKEVIQEWNLTNIKRWAASPKSFTLDFGD K E V I K R 0 0 2 0 0 1 2 0 0 2 1 1 0 0 0 0 1 1 0 1 0 0 12 0 1485.7827 Q9Y490 Q9Y490 346 357 TLN1 Talin-1 yes yes 2 0.03169 27.621 By MS/MS By matching By matching 1 1 1 1.2348 1.0676 9.6555 3 Median NaN NaN NaN 0 0 Median 1.2348 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3134 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1308 0.91677 NaN 1 0 Median 4475500 2091000 2384500 0 0 0 3378900 1592400 1786500 0 0 0 157410 57547 99866 0 0 0 939200 441070 498130 8216 4441 8540 40864;40865;40866 40870 40870 1 EVIRNDGVLLLQALTR PMGVSRLMDLLADSREVIRNDGVLLLQALT VIRNDGVLLLQALTRSNGAIQKIVAFENAF R E V T R S 1 2 1 1 0 1 1 1 0 1 4 0 0 0 0 0 1 0 0 2 0 0 16 1 1809.0472 O60763 O60763 180 195 USO1 General vesicular transport factor p115 yes yes 3 0.0012707 34.909 By MS/MS By matching 1 1 1.2451 1.2886 12.597 2 Median 1.061 1.1788 NaN 1 0 Median 1.4611 1.4086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2082200 886220 1196000 1377600 615320 762300 704630 270900 433730 0 0 0 0 0 0 0 0 0 0 0 0 8217 1630 8541 40867;40868 40871;40872 40871 2 EVITAQDTVIK KESVNKAQEEVTKQKEVITAQDTVIKAKYA TKQKEVITAQDTVIKAKYAEVAKHKEQNND K E V I K A 1 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 2 0 0 2 0 0 11 0 1215.6711 O95347 O95347 880 890 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00016463 113.62 By MS/MS By MS/MS By MS/MS 1 1 2 0.98744 0.92319 16.035 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93424 0.99789 NaN 1 0 Median 1.3152 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98744 0.83052 3.9589 2 0 Median 26046000 13288000 12758000 0 0 0 0 0 0 11927000 6941700 4985500 10973000 4669300 6303200 0 0 0 3145700 1676500 1469200 8218 1766 8542 40869;40870;40871;40872 40873;40874;40875;40876 40874 4 EVKKEEGEAFAR VIMLIGNKSDLESRREVKKEEGEAFAREHG SRREVKKEEGEAFAREHGLIFMETSAKTAS R E V A R E 2 1 0 0 0 0 4 1 0 0 0 2 0 1 0 0 0 0 0 1 0 0 12 2 1391.7045 P61019;H7C125 P61019 128 139 RAB2A Ras-related protein Rab-2A yes no 3 0.05831 15.387 By matching By MS/MS 1 1 1.0815 1.0392 13.194 2 Median 1.0714 1.1408 NaN 1 0 Median 1.0918 0.94661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 870110 413150 456960 450640 212340 238310 419470 200820 218650 0 0 0 0 0 0 0 0 0 0 0 0 8219 2537 8543 40873;40874 40877 40877 1 EVLADFQR CKQGLPAFRQSQPSREVLADFQRREPYKFL RQSQPSREVLADFQRREPYKFLQFAYFKAN R E V Q R R 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 976.49779 C9JP16;O75718 C9JP16 137 144 CRTAP Cartilage-associated protein yes no 2 0.021687 65.777 By MS/MS By MS/MS 1 1 1.3101 1.2105 27.973 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0044 0.99325 NaN 1 1 Median 1.7088 1.4753 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16888000 7745900 9142500 0 0 0 0 0 0 9488800 4998700 4490000 7399700 2747200 4652500 0 0 0 0 0 0 8220 714 8544 40875;40876 40878;40879 40879 2 EVLASDLVVK DDHYRVAGAQIQGAKEVLASDLVVKVRAPM IQGAKEVLASDLVVKVRAPMVNPTLGVHEA K E V V K V 1 0 0 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 3 0 0 10 0 1071.6176 Q13423;A0A590UK15;A0A590UJM2;A0A590UK29;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7 Q13423 118 127 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.00042117 107.57 By MS/MS By MS/MS 2 1 0.87557 0.87919 30.506 3 Median 0.85134 0.83951 6.5316 2 0 Median 1.5834 1.4153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97428000 47022000 50406000 55446000 29298000 26148000 41982000 17724000 24258000 0 0 0 0 0 0 0 0 0 0 0 0 8221 2814 8545 40877;40878;40879 40880;40881;40882;40883 40882 4 EVLDSFLDLAR ASVGAAGSAENAPSKEVLDSFLDLARNIFP APSKEVLDSFLDLARNIFPSNLVSAAFRSY K E V A R N 1 1 0 2 0 0 1 0 0 0 3 0 0 1 0 1 0 0 0 1 0 0 11 0 1276.6663 Q15758 Q15758 179 189 SLC1A5 Neutral amino acid transporter B(0) yes yes 2 0.00019975 96.331 By MS/MS By MS/MS 4 4 0.99677 0.91761 22.266 8 Median 1.1578 1.1179 4.8897 4 2 Median 0.93468 0.73259 5.7166 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71666000 36745000 34920000 17554000 8211700 9342100 54112000 28534000 25578000 0 0 0 0 0 0 0 0 0 0 0 0 8222 2968 8546 40880;40881;40882;40883;40884;40885;40886;40887 40884;40885;40886;40887;40888;40889;40890;40891;40892 40890 9 EVLDVAAGMIK SEDIEGMRLVCRLAREVLDVAAGMIKPGVT RLAREVLDVAAGMIKPGVTTEEIDHAVHLA R E V I K P 2 0 0 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 2 0 0 11 0 1144.6162 P53582 P53582 148 158 METAP1 Methionine aminopeptidase 1 yes yes 2 0.022328 34.253 By MS/MS By matching 1 1 1.4239 1.4032 18.761 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1 1.2288 NaN 1 0 Median 1.8431 1.6022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2062500 971820 1090700 0 0 0 0 0 0 1980500 940110 1040400 82024 31716 50308 0 0 0 0 0 0 8223 2468 8547 40888;40889 40893 40893 1 EVLEALGEVMVSRPR QSVSQIDGDFEDYKREVLEALGEVMVSRPR EVLEALGEVMVSRPRE______________ R E V P R E 1 2 0 0 0 0 3 1 0 0 2 0 1 0 1 1 0 0 0 3 0 0 15 1 1683.8978 Q8NE71;H0YGW7;A0A0G2JIC2 Q8NE71 830 844 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 0.066893 10.944 By matching By MS/MS By matching By matching 2 1 1 1 1.0794 1.004 24.631 5 Median NaN NaN NaN 0 0 Median 1.4084 1.291 35.556 2 0 Median 1.2111 1.3994 NaN 1 0 Median 1.0159 0.99456 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0794 0.96159 NaN 1 0 Median 5011400 2429600 2581800 0 0 0 416660 196690 219970 3148000 1447900 1700100 265460 125490 139970 0 0 0 1181300 659590 521670 8224 3427 8548 40890;40891;40892;40893;40894 40894 40894 1 EVLEGLEYLHK KSGVLDESTIATILREVLEGLEYLHKNGQI TILREVLEGLEYLHKNGQIHRDVKAGNILL R E V H K N 0 0 0 0 0 0 3 1 1 0 3 1 0 0 0 0 0 0 1 1 0 0 11 0 1328.6976 O95747;C9JIG9 O95747 129 139 OXSR1 Serine/threonine-protein kinase OSR1 yes no 3 0.059186 23.226 By MS/MS 1 0.91771 0.88392 NaN 1 Median 0.91771 0.88392 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2723900 1180700 1543200 2723900 1180700 1543200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8225 1789 8549 40895 40895 40895 1 EVLEKQPVLSQTEAR LATGYGAYLAQPLLREVLEKQPVLSQTEAR EVLEKQPVLSQTEARDLVERCMRVLYYRDA R E V A R D 1 1 0 0 0 2 3 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 15 1 1725.9261 P28070 P28070 197 211 PSMB4 Proteasome subunit beta type-4 yes yes 2;3 5.5124E-05 76.332 By MS/MS 2 1.0996 1.0234 24.317 2 Median NaN NaN NaN 0 0 Median 1.0996 1.0234 24.317 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8314000 4046400 4267700 0 0 0 8314000 4046400 4267700 0 0 0 0 0 0 0 0 0 0 0 0 8226 2160 8550 40896;40897 40896;40897;40898 40896 3 EVLELDSIR NKQDLPGALSSNAIREVLELDSIRSHHWCI SSNAIREVLELDSIRSHHWCIQGCSAVTGE R E V I R S 0 1 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1072.5764 P36404 P36404 140 148 ARL2 ADP-ribosylation factor-like protein 2 yes yes 2 0.0018402 77.072 By MS/MS By MS/MS By matching By matching 1 1 2 1 1.2742 1.2111 104.98 5 Median 0.98874 0.94839 NaN 1 0 Median 1.2742 1.0575 NaN 1 0 Median 2.241 2.6172 108.98 2 0 Median 9.5876 8.7975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31420000 13271000 18149000 23145000 10783000 12361000 2500000 972700 1527300 5073700 1437300 3636400 701030 77132 623900 0 0 0 0 0 0 8227 2254 8551 40898;40899;40900;40901;40902 40899;40900;40901;40902 40900 4 EVLEQVER LVTKGRVPYPGMVNREVLEQVERGYRMPCP YPGMVNREVLEQVERGYRMPCPQGCPESLH R E V E R G 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 1000.5189 J3QRU1;P07947;P06241 J3QRU1 485 492 YES1;FYN Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS 1 1 1 1.0936 1.1145 2.7044 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0902 1.136 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0969 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median 16824000 8095300 8728400 0 0 0 0 0 0 3563100 1523800 2039300 0 0 0 13261000 6571500 6689000 0 0 0 8228 1354 8552 40903;40904;40905 40903;40904;40905;40906;40907 40905 5 EVLGEHIVPSDQQQIVR ______________________________ LGEHIVPSDQQQIVRVLRTPGNNLHEVETA K E V V R V 0 1 0 1 0 3 2 1 1 2 1 0 0 0 1 1 0 0 0 3 0 0 17 0 1946.0221 E9PQD0;E9PS30;E9PLI6;E9PS76;Q8N9N8 E9PQD0 13 29 EIF1AD Probable RNA-binding protein EIF1AD yes no 3 4.6841E-19 125.28 By MS/MS By MS/MS 1 2 51.657 49.257 232.52 3 Plateau 51.657 49.257 NaN 1 1 Median 1.0577 0.87785 1.6376 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 276010000 11532000 264480000 271390000 9247800 262140000 4622600 2283700 2338900 0 0 0 0 0 0 0 0 0 0 0 0 8229 959 8553 40906;40907;40908 40908;40909;40910 40908 3 EVLGFGGPDAR RTGRYARLPKDPKIREVLGFGGPDARLEEK PKIREVLGFGGPDARLEEKLMTVVSGPDPV R E V A R L 1 1 0 1 0 0 1 3 0 0 1 0 0 1 1 0 0 0 0 1 0 0 11 0 1116.5564 Q01970 Q01970 88 98 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.00094301 61.78 By MS/MS 1 1.1836 1.0077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1836 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2244400 1182900 1061500 0 0 0 0 0 0 0 0 0 2244400 1182900 1061500 0 0 0 0 0 0 8230 2695 8554 40909 40911;40912 40912 2 EVLHSYLR LHRFCPTENVAKINREVLHSYLRNYYTPDR NVAKINREVLHSYLRNYYTPDRMVLAGVGV R E V L R N 0 1 0 0 0 0 1 0 1 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 1015.5451 Q10713 Q10713 236 243 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.0035088 91.906 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1804 1.1448 14.232 5 Median 1.1092 1.0757 8.8062 2 0 Median 1.6839 1.4182 NaN 1 0 Median 1.0972 1.1014 NaN 1 0 Median 1.5745 1.3517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22717000 9324800 13392000 8157200 3810400 4346800 8183700 2917900 5265800 3831400 1643400 2188000 2544500 953160 1591300 0 0 0 0 0 0 8231 2754 8555 40910;40911;40912;40913;40914 40913;40914;40915;40916;40917;40918;40919;40920 40917 8 EVLIETAK VCHIPMAEPFCPKTREVLIETAKKLGLRCH PFCPKTREVLIETAKKLGLRCHSKGTMVTI R E V A K K 1 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 0 901.51205 B4DUC8;Q13126;J3QSB7 B4DUC8 167 174 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 2 0.011309 57.177 By MS/MS By MS/MS 1 2 1.0982 1.0459 7.4204 3 Median 1.093 1.0582 NaN 1 0 Median 1.1577 0.98385 8.6477 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6021100 2709600 3311500 3497100 1461600 2035400 2524000 1248000 1276000 0 0 0 0 0 0 0 0 0 0 0 0 8232 604 8556 40915;40916;40917 40921;40922 40921 2 EVLINNINR DPSILDSLDLNEDEREVLINNINRRLTPQA LNEDEREVLINNINRRLTPQAVKIRADIEV R E V N R R 0 1 3 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1083.6037 P05198;G3V4T5;H0YJS4 P05198 174 182 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 7.6684E-05 149.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.2131 1.0089 10.688 5 Median 1.0138 0.94906 NaN 1 0 Median 1.2131 1.0089 NaN 1 0 Median 1.2672 1.2315 NaN 1 0 Median 1.1901 1.0026 7.2641 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81602000 38037000 43565000 16091000 7527000 8564500 11556000 5061900 6494200 24437000 11301000 13135000 29518000 14147000 15371000 0 0 0 0 0 0 8233 1862 8557 40918;40919;40920;40921;40922 40923;40924;40925;40926;40927;40928;40929;40930;40931;40932 40932 10 EVLINNINRR DPSILDSLDLNEDEREVLINNINRRLTPQA NEDEREVLINNINRRLTPQAVKIRADIEVA R E V R R L 0 2 3 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1239.7048 P05198;G3V4T5;H0YJS4 P05198 174 183 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2;3 0.0021207 65.038 By MS/MS By matching By MS/MS 2 1 4 1.3632 1.331 10.81 7 Median 1.2441 1.3394 12.92 2 0 Median NaN NaN NaN 0 0 Median 1.4319 1.4946 NaN 1 0 Median 1.4298 1.2587 10.392 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28138000 11318000 16821000 6359600 2401200 3958400 0 0 0 3766400 1664400 2101900 18012000 7252200 10760000 0 0 0 0 0 0 8234 1862 8558 40923;40924;40925;40926;40927;40928;40929 40933;40934;40935;40936;40937 40936 4 EVLLEAQDMAVR AQLEFNDKKGAKIIKEVLLEAQDMAVRDHN IIKEVLLEAQDMAVRDHNVEFRSNLYIAES K E V V R D 2 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 12 0 1372.7021 J3KQY1;E7ESL0;Q9NWU5 J3KQY1 139 150 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 1.5803E-10 136.33 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1255 1.04 18.254 6 Median 1.0364 0.99456 23.195 2 1 Median 1.1124 0.92381 31.062 2 1 Median 1.0523 1.0075 NaN 1 0 Median 1.3101 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26935000 12692000 14244000 16693000 8087700 8605400 5508900 2352500 3156400 4377400 2068700 2308700 355870 182740 173130 0 0 0 0 0 0 8235 887 8559;8560 40930;40931;40932;40933;40934;40935 40938;40939;40940;40941;40942;40943;40944 40938 322 7 EVLLEVQK EQCQQFEEKRLRFFREVLLEVQKHLDLSNV KRLRFFREVLLEVQKHLDLSNVAGYKAIYH R E V Q K H 0 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 956.55425 A0A0U1RR22;Q9UNF0 A0A0U1RR22 246 253 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.0035542 89.142 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1909 1.1216 10.619 8 Median 1.0217 0.97865 11.934 2 0 Median 1.3776 1.1757 2.7583 2 0 Median 1.1135 1.1309 5.0705 2 0 Median 1.3398 1.1455 14.324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40654000 18940000 21714000 14194000 6999800 7194500 8857100 3942800 4914200 12900000 6126400 6774100 4701900 1870600 2831300 0 0 0 0 0 0 8236 307 8561 40936;40937;40938;40939;40940;40941;40942;40943 40945;40946;40947;40948;40949;40950;40951 40947 7 EVLLTGIQTQGAK TEFNPEPWIQVDMQKEVLLTGIQTQGAKHY QKEVLLTGIQTQGAKHYLKPYYTTEFCVAY K E V A K H 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1356.7613 CON__Q28107 CON__Q28107 1957 1969 yes yes 2 0.0017246 68.893 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1670700 1670700 0 0 0 0 0 0 0 0 0 0 1670700 1670700 0 0 0 0 0 0 0 + 8237 772 8562 40944 40952 40952 1 EVLLVALGSR RREEATRQGELPLVKEVLLVALGSRQSRPY LPLVKEVLLVALGSRQSRPYLLVHVDQELL K E V S R Q 1 1 0 0 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 2 0 0 10 0 1055.6339 Q10570 Q10570 848 857 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.00033827 96.331 By MS/MS By MS/MS 3 2 1.2203 1.1348 12.651 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98363 1.0322 15.5 3 0 Median 1.3882 1.2112 9.2126 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29242000 14023000 15218000 0 0 0 0 0 0 28225000 13618000 14606000 1016700 404970 611780 0 0 0 0 0 0 8238 2753 8563 40945;40946;40947;40948;40949 40953;40954;40955;40956;40957;40958 40955 6 EVLNEEDEVQPNGK YAKNKFKNKRLLGTREVLNEEDEVQPNGKI REVLNEEDEVQPNGKIFKKVILGQYNWLSY R E V G K I 0 0 2 1 0 1 4 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 14 0 1598.7424 O95573 O95573 109 122 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.0036837 38.567 By MS/MS By matching By matching 1 2 1 0.92517 0.8709 20.669 4 Median 0.76366 0.72753 NaN 1 0 Median 1.1899 1.0512 5.2743 2 0 Median 0.72206 0.74896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13471000 7231400 6239900 4077500 2225100 1852500 2758300 1336500 1421700 6635500 3669800 2965700 0 0 0 0 0 0 0 0 0 8239 1780 8564 40950;40951;40952;40953 40959 40959 1 EVLPALENNKEQIQK CYRMVGGVLVERTVKEVLPALENNKEQIQK EVLPALENNKEQIQKIIETLTQQLQAKGKE K E V Q K I 1 0 2 0 0 2 3 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 15 1 1751.9418 Q9UHV9 Q9UHV9 85 99 PFDN2 Prefoldin subunit 2 yes yes 3 8.3405E-05 70.529 By MS/MS By MS/MS 1 1 0.93538 0.87714 2.433 2 Median 0.89748 0.89237 NaN 1 0 Median 0.97488 0.86218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39916000 20447000 19470000 32964000 17173000 15791000 6952700 3274000 3678700 0 0 0 0 0 0 0 0 0 0 0 0 8240 4284 8565 40954;40955 40960;40961;40962;40963 40963 4 EVLPGEIVEISR SESCSFLSIGARYYREVLPGEIVEISRHNV YYREVLPGEIVEISRHNVQTLDIISRSEGN R E V S R H 0 1 0 0 0 0 3 1 0 2 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1339.7347 Q06203 Q06203 249 260 PPAT Amidophosphoribosyltransferase yes yes 2 0.00047044 94.297 By MS/MS By MS/MS 2 1 1.6839 1.6801 35.92 3 Median 1.9647 1.9276 19.435 2 2 Median 1.27 1.0849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12178000 3900400 8277300 8936600 2474400 6462200 3241100 1426000 1815100 0 0 0 0 0 0 0 0 0 0 0 0 8241 2722 8566 40956;40957;40958 40964;40965;40966 40964 3 EVLPSTR SPAKIHVFYIDYGNREVLPSTRLGTLSPAF FYIDYGNREVLPSTRLGTLSPAFSTRVLPA R E V T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 7 0 800.43922 Q7KZF4 Q7KZF4 770 776 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0034092 104.11 By MS/MS By MS/MS By matching 1 1 1 1.2372 1.0364 6.9364 3 Plateau 1.1386 1.1514 NaN 1 0 Median 1.2372 1.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.183 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10657000 4836000 5821300 835330 376520 458810 8921300 4031200 4890100 0 0 0 900630 428240 472390 0 0 0 0 0 0 8242 3214 8567 40959;40960;40961 40967;40968;40969 40969 3 EVLQLQEEVK RKAEEVQAWAQRKEREVLQLQEEVKNFITR QRKEREVLQLQEEVKNFITRENLEARVEAA R E V V K N 0 0 0 0 0 2 3 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1213.6554 Q9BYN8 Q9BYN8 156 165 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 0.0044151 67.897 By MS/MS 1 0.47015 0.3935 NaN 1 Median NaN NaN NaN 0 0 Median 0.47015 0.3935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10275000 7122100 3153100 0 0 0 10275000 7122100 3153100 0 0 0 0 0 0 0 0 0 0 0 0 8243 3894 8568 40962 40970 40970 1 EVLQNQLGIRPPTR VDPSFLAALPDDIRREVLQNQLGIRPPTRT REVLQNQLGIRPPTRTAPSTNSSAPAVVGN R E V T R T 0 2 1 0 0 2 1 1 0 1 2 0 0 0 2 0 1 0 0 1 0 0 14 1 1619.9107 Q7Z6Z7 Q7Z6Z7 2983 2996 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 1.8352E-07 119.01 By MS/MS By MS/MS By MS/MS 4 5 1 0.93083 0.94471 22.885 10 Median 0.77721 0.83785 31.554 4 0 Median 1.1441 1.1179 20.207 5 0 Median 0.89532 0.98396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 245620000 129530000 116080000 155610000 84611000 70998000 83811000 41499000 42313000 6195800 3421800 2773900 0 0 0 0 0 0 0 0 0 8244 3253 8569 40963;40964;40965;40966;40967;40968;40969;40970;40971;40972 40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981;40982;40983;40984;40985;40986;40987 40973 17 EVLSMDDEIQK KEIMLGLKRLPDLIKEVLSMDDEIQKLATE DLIKEVLSMDDEIQKLATELYHQKSVLIMG K E V Q K L 0 0 0 2 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1305.6122 Q06210 Q06210 537 547 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0003569 71.349 By MS/MS By matching 1 1 1.2648 1.1289 7.6692 2 Median 1.3202 1.1918 NaN 1 0 Median 1.2118 1.0693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16531000 6790300 9740300 14079000 5702200 8377100 2451300 1088000 1363200 0 0 0 0 0 0 0 0 0 0 0 0 8245 2723 8570 40973;40974 40988;40989 40988 2 EVLTDIFAK TMPYWNLLPPKRPIKEVLTDIFAKVLEKGW PKRPIKEVLTDIFAKVLEKGWVDSRSIHIF K E V A K V 1 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 9 0 1034.5648 F5GY88;A0A0B4J1W0;O75448;F5H5K2 F5GY88 728 736 MED24 Mediator of RNA polymerase II transcription subunit 24 yes no 2 0.029888 36.395 By matching By MS/MS By matching 1 1 1 1.1115 1.1816 96.173 3 Median NaN NaN NaN 0 0 Median 0.32243 0.29061 NaN 1 0 Median 1.1115 1.1816 NaN 1 0 Median 2.185 1.832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3765800 1689900 2075900 0 0 0 608710 305470 303240 2010600 978750 1031900 1146500 405710 740740 0 0 0 0 0 0 8246 212 8571 40975;40976;40977 40990;40991 40991 2 EVLTDNNLGQR MSPELDTYGITKRVKEVLTDNNLGQRLFGE KRVKEVLTDNNLGQRLFGETILGLTQGSVS K E V Q R L 0 1 2 1 0 1 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1257.6313 A0A2R8Y852;A0A2R8YDI1;O14529 A0A2R8Y852 1092 1102 CUX2 Homeobox protein cut-like 2 no no 2 0.00042523 69.954 By matching By matching By MS/MS 1 1 1 1.3481 1.3969 20.192 3 Plateau 1.3197 1.2485 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3572 1.5077 NaN 1 0 Median 1.148 1.007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6351300 3147400 3203800 2327100 1112900 1214100 0 0 0 2408400 1241900 1166500 1615800 792620 823210 0 0 0 0 0 0 8247 388 8572 40978;40979;40980 40992;40993 40992 2 EVLTGNDEVIGQVLSTLK IRLPYTASSGLMAPREVLTGNDEVIGQVLS TGNDEVIGQVLSTLKSEDVPYTAALTAVRP R E V L K S 0 0 1 1 0 1 2 2 0 1 3 1 0 0 0 1 2 0 0 3 0 0 18 0 1914.031 Q15904;A0A0C4DGX8 Q15904 194 211 ATP6AP1 V-type proton ATPase subunit S1 yes no 2 1.0855E-07 89.629 By MS/MS By MS/MS 1 3 1.2283 1.0782 5.1679 4 Linear 1.2272 1.1571 NaN 1 0 Median 1.2206 1.0522 3.5531 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16504000 7352700 9151700 9882000 4500000 5382000 6622400 2852700 3769700 0 0 0 0 0 0 0 0 0 0 0 0 8248 257 8573 40981;40982;40983;40984 40994;40995;40996;40997 40996 4 EVLVVNSQGEISR AAAAHEANKLFKEGKEVLVVNSQGEISRLS GKEVLVVNSQGEISRLSTKKEVIMKGNINN K E V S R L 0 1 1 0 0 1 2 1 0 1 1 0 0 0 0 2 0 0 0 3 0 0 13 0 1428.7573 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 811 823 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 6.2897E-07 166.55 By MS/MS 2 0.7292 0.78163 1.8898 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7292 0.78163 1.8898 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32059000 18481000 13578000 0 0 0 0 0 0 32059000 18481000 13578000 0 0 0 0 0 0 0 0 0 8249 2762 8574 40985;40986 40998;40999;41000;41001 40999 4 EVLYEIFR GDRNLERRCRPNLSREVLYEIFRSLHTLVG CRPNLSREVLYEIFRSLHTLVGQLDLRDDV R E V F R S 0 1 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1067.5651 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9 Q9NS73 28 35 MBIP MAP3K12-binding inhibitory protein 1 yes no 2 0.024653 43.246 By MS/MS By matching 1 1 1.2897 1.2511 1.2526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.161 1.2622 NaN 1 0 Median 1.4326 1.24 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2963200 1408200 1554900 0 0 0 0 0 0 2420000 1202400 1217600 543170 205850 337320 0 0 0 0 0 0 8250 4097 8575 40987;40988 41002 41002 1 EVMDSLKQETQGLQK NALEKEKEKEEKKLKEVMDSLKQETQGLQK EVMDSLKQETQGLQKEKESREKELMGFSKS K E V Q K E 0 0 0 1 0 3 2 1 0 0 2 2 1 0 0 1 1 0 0 1 0 0 15 1 1732.8665 Q9NTJ3;E9PD53 Q9NTJ3 462 476 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 9.3845E-05 79.659 By MS/MS By matching By matching 3 1 1 0.94044 0.93393 31.995 5 Median 0.91121 0.90526 7.2484 3 0 Median NaN NaN NaN 0 0 Median 1.5823 1.828 NaN 1 0 Median 1.084 1.0153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37885000 18547000 19338000 26388000 13335000 13053000 0 0 0 9805700 4452900 5352700 1691500 758720 932760 0 0 0 0 0 0 8251 4108 8576 40989;40990;40991;40992;40993 41003;41004 41004 2 EVMFTEEDVK LDFLRGGDLFTRLSKEVMFTEEDVKFYLAE TRLSKEVMFTEEDVKFYLAELALALDHLHS K E V V K F 0 0 0 1 0 0 3 0 0 0 0 1 1 1 0 0 1 0 0 2 0 0 10 0 1225.5537 E9PGT3;Q15418;B7Z3B5;F2Z2J1;Q15349;D6RHW7;E9PMM7;D6R910;B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y7S9 B1AXG1 133 142 RPS6KA1;RPS6KA2;RPS6KA3 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3 no no 2 0.035967 32.32 By matching By MS/MS 1 1 0.9501 0.85937 5.4651 2 Median 0.88364 0.82679 NaN 1 0 Median 1.0216 0.89323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10445000 5624700 4820300 5453400 3099800 2353600 4991600 2524900 2466700 0 0 0 0 0 0 0 0 0 0 0 0 8252 581;926 8577 40994;40995 41005 41005 1 EVMILITGAHK TMALTVGVGTVMDAREVMILITGAHKAFAL MDAREVMILITGAHKAFALYKAIEEGVNHM R E V H K A 1 0 0 0 0 0 1 1 1 2 1 1 1 0 0 0 1 0 0 1 0 0 11 0 1210.6744 P46926;D6RFF8;D6R9P4;Q8TDQ7;V9GYK3 P46926 198 208 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase;Glucosamine-6-phosphate isomerase 2 yes no 2;3 0.00013635 85.731 By MS/MS By MS/MS 4 2 1.1074 0.9846 19.319 6 Median 0.90655 0.89778 16.196 4 0 Median 1.368 1.1486 19.824 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36311000 15759000 20552000 21431000 9386700 12045000 14880000 6372400 8507800 0 0 0 0 0 0 0 0 0 0 0 0 8253 2348 8578 40996;40997;40998;40999;41000;41001 41006;41007;41008 41007 3 EVMLILIR LIPLMDAEYANYYTREVMLILIREFQSPDE YANYYTREVMLILIREFQSPDEEMKKIVLK R E V I R E 0 1 0 0 0 0 1 0 0 2 2 0 1 0 0 0 0 0 0 1 0 0 8 0 985.59942 O75533 O75533 768 775 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.017646 60.788 By matching By matching By MS/MS By MS/MS By matching 1 2 1 2 1 1.2649 1.1797 9.8706 7 Median 1.0057 1.0101 NaN 1 0 Median 1.2782 1.1372 0.74796 2 0 Median 1.1257 1.2149 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2638 1.3338 3.0248 2 1 Median 1.3385 1.1797 NaN 1 0 Median 5682000 2584700 3097300 318140 152040 166100 769500 341110 428390 1068600 549120 519470 0 0 0 3265900 1457500 1808400 259880 84973 174910 8254 1683 8579 41002;41003;41004;41005;41006;41007;41008 41009;41010;41011 41009 3 EVMLVGIGDK KQMKSEVATLTAAGKEVMLVGIGDKIRGIL TAAGKEVMLVGIGDKIRGILYRTHSDQFLV K E V D K I 0 0 0 1 0 0 1 2 0 1 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1059.5634 P36542 P36542 127 136 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 0.0012762 66.962 By MS/MS By MS/MS 1 2 1.2104 1.0572 28.263 2 Median 0.95284 0.86569 NaN 1 0 Median 1.5377 1.2911 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34689000 15815000 18874000 19679000 10032000 9647500 15010000 5783100 9226900 0 0 0 0 0 0 0 0 0 0 0 0 8255 2257 8580 41009;41010;41011 41012;41013;41014;41015 41012 4 EVMLVGIGDKIR KQMKSEVATLTAAGKEVMLVGIGDKIRGIL AGKEVMLVGIGDKIRGILYRTHSDQFLVAF K E V I R G 0 1 0 1 0 0 1 2 0 2 1 1 1 0 0 0 0 0 0 2 0 0 12 1 1328.7486 P36542 P36542 127 138 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 3 0.00079503 48.568 By MS/MS By matching 1 1 1.1855 1.1478 11.639 2 Median 1.0584 1.0572 NaN 1 0 Median 1.3279 1.2463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6175000 3016100 3158900 5878000 2888000 2990100 296970 128190 168770 0 0 0 0 0 0 0 0 0 0 0 0 8256 2257 8581 41012;41013 41016;41017 41017 2 EVMQEVAQLSQFDEELYK SRGYIPIYTPFFMRKEVMQEVAQLSQFDEE QEVAQLSQFDEELYKVIGKGSEKSDDNSYD K E V Y K V 1 0 0 1 0 3 4 0 0 0 2 1 1 1 0 1 0 0 1 2 0 0 18 0 2185.0249 Q5T5C7;P49591 Q5T5C7 232 249 SARS Serine--tRNA ligase, cytoplasmic yes no 3 0.056817 9.0466 By MS/MS By matching 1 1 1.4983 1.3933 16.548 2 Median 1.6194 1.5663 NaN 1 0 Median 1.3862 1.2395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2203500 873560 1330000 1792700 704720 1088000 410830 168840 241990 0 0 0 0 0 0 0 0 0 0 0 0 8257 2387 8582 41014;41015 41018 41018 1 EVMSLHEASR EGSGCIAGVTVPSTREVMSLHEASRKELIP VPSTREVMSLHEASRKELIPAAFATWLLEA R E V S R K 1 1 0 0 0 0 2 0 1 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1157.5499 P58107;A0A075B730 P58107 1909 1918 EPPK1 Epiplakin yes no 2 0.00048844 73.985 By MS/MS By MS/MS 1 1 1.3596 1.2384 20.423 2 Median 1.4336 1.4308 NaN 1 1 Median 1.2894 1.0719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7629900 3162400 4467500 955340 398020 557320 6674600 2764300 3910200 0 0 0 0 0 0 0 0 0 0 0 0 8258 2520 8583 41016;41017 41019;41020;41021 41020 3 EVMSTPVTCLR LHWEAPVTSHSLTAREVMSTPVTCLRRREK LTAREVMSTPVTCLRRREKVGVIVDVLSDT R E V L R R 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 2 0 0 2 0 0 11 0 1291.6264 P51798;H0Y2M6 P51798 629 639 CLCN7 H(+)/Cl(-) exchange transporter 7 yes no 2 0.046701 46.158 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8259 2442 8584 41018 41022 41022 1 EVMVDDR SNQYKATIGADFLTKEVMVDDRLVTMQIWD IGADFLTKEVMVDDRLVTMQIWDTAGQERF K E V D R L 0 1 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 7 0 862.38547 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J7D1 P51149 49 55 RAB7A Ras-related protein Rab-7a yes no 2 0.059615 37.558 By matching By MS/MS By matching 1 1 1 1.2755 1.203 21.631 3 Median 1.2755 1.203 NaN 1 0 Median 1.5482 1.3167 NaN 1 0 Median 0.93404 0.87245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5004100 2138500 2865700 2948000 1270400 1677600 1308500 450790 857700 747650 417290 330360 0 0 0 0 0 0 0 0 0 8260 2428 8585 41019;41020;41021 41023 41023 1 EVNAVDSEHEK QFFLCPLFDESCKDREVNAVDSEHEKNVMN CKDREVNAVDSEHEKNVMNDAWRLFQLEKA R E V E K N 1 0 1 1 0 0 3 0 1 0 0 1 0 0 0 1 0 0 0 2 0 0 11 0 1255.5681 P14735;A0A3B3ISG5;Q5T5N3 P14735 182 192 IDE Insulin-degrading enzyme yes no 2;3 0.015509 36.693 By MS/MS 2 1.0684 0.9679 5.1513 2 Median NaN NaN NaN 0 0 Median 1.0684 0.9679 5.1513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 803360 431730 371630 0 0 0 803360 431730 371630 0 0 0 0 0 0 0 0 0 0 0 0 8261 423 8586 41022;41023 41024;41025;41026 41025 3 EVNDLLQENEQLMK QEIMTLKEEQNKMQKEVNDLLQENEQLMKV KEVNDLLQENEQLMKVMKTKHECQNLESEP K E V M K V 0 0 2 1 0 2 3 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 14 0 1701.8244 P49454 P49454 1145 1158 CENPF Centromere protein F yes yes 2 4.5946E-07 121.9 By MS/MS 1 0.89533 0.95729 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89533 0.95729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11208000 5124200 6083900 0 0 0 0 0 0 11208000 5124200 6083900 0 0 0 0 0 0 0 0 0 8262 2383 8587 41024 41027;41028 41028 2 EVNEGIQALSNSEEEKK SSKSGPVIAKREVKKEVNEGIQALSNSEEE NEGIQALSNSEEEKKGVAASLLAPLLPEGI K E V K K G 1 0 2 0 0 1 5 1 0 1 1 2 0 0 0 2 0 0 0 1 0 0 17 1 1902.9171 Q8N3X1 Q8N3X1 303 319 FNBP4 Formin-binding protein 4 yes yes 3 0.00042527 48.314 By MS/MS 1 0.42111 0.48277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42111 0.48277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4472500 2821700 1650800 0 0 0 0 0 0 4472500 2821700 1650800 0 0 0 0 0 0 0 0 0 8263 3370 8588 41025 41029 41029 1 EVNEQTHFASMPR SKDERQEDPYGPQTKEVNEQTHFASMPRDI TKEVNEQTHFASMPRDIYQDYTQDSFSIQD K E V P R D 1 1 1 0 0 1 2 0 1 0 0 0 1 1 1 1 1 0 0 1 0 0 13 0 1544.7042 O15226 O15226 82 94 NKRF NF-kappa-B-repressing factor yes yes 3 0.0042588 33.204 By MS/MS By matching 1 1 0.9164 0.95869 28.622 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1016 1.1737 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76232 0.78304 NaN 1 0 Median NaN NaN NaN 0 0 Median 14535000 7674200 6860600 0 0 0 0 0 0 6246500 3154300 3092200 0 0 0 8288300 4519900 3768400 0 0 0 8264 1532 8589 41026;41027 41030 41030 1 EVNEVIQNPATITR LTAEQILQHMVECIREVNEVIQNPATITRI REVNEVIQNPATITRILLSHFNWDKEKLME R E V T R I 1 1 2 0 0 1 2 0 0 2 0 0 0 0 1 0 2 0 0 2 0 0 14 0 1582.8315 Q9Y4X5;H3BSK4;H3BNB9 Q9Y4X5 119 132 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes no 2 3.0459E-05 136.5 By MS/MS By matching 1 1 0.79493 0.72189 13.119 2 Median 0.68769 0.65794 NaN 1 0 Median 0.91889 0.79206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9865900 5363400 4502400 8589800 4690600 3899300 1276000 672870 603160 0 0 0 0 0 0 0 0 0 0 0 0 8265 4450 8590 41028;41029 41031 41031 1 EVNKFQMAYSNLLR ATDGKKKISTVVSSKEVNKFQMAYSNLLRA KEVNKFQMAYSNLLRANMDGLKKRDKKNKT K E V L R A 1 1 2 0 0 1 1 0 0 0 2 1 1 1 0 1 0 0 1 1 0 0 14 1 1711.8716 P37108 P37108 75 88 SRP14 Signal recognition particle 14 kDa protein yes yes 2;3 3.4676E-23 202.16 By MS/MS By matching By MS/MS By matching By MS/MS 3 1 4 1 1 1.0538 1.0388 17.509 10 Median 1.0288 1.019 5.8119 3 0 Median 1.1318 0.9974 NaN 1 0 Median 1.0355 1.0714 4.6852 4 0 Median 1.1653 1.0315 NaN 1 0 Median 1.5552 1.7526 NaN 1 0 Median NaN NaN NaN 0 0 Median 135340000 63041000 72297000 83182000 39139000 44044000 271120 113440 157670 46216000 21432000 24784000 1137100 560170 576940 4532000 1797300 2734700 0 0 0 8266 2266 8591;8592 41030;41031;41032;41033;41034;41035;41036;41037;41038;41039 41032;41033;41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045 41034 1012 14 EVNLLPDNLLNR FLRKELPVRLANTMREVNLLPDNLLNRPSV TMREVNLLPDNLLNRPSVGLVQSWYMQSFL R E V N R P 0 1 3 1 0 0 1 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 12 0 1408.7674 Q15120 Q15120 63 74 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.032829 27.115 By MS/MS By matching 1 1 0.826 0.76738 7.5044 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7352 0.72772 NaN 1 0 Median 0.92801 0.8092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2094100 1040700 1053400 0 0 0 0 0 0 1138200 577870 560370 955860 462810 493060 0 0 0 0 0 0 8267 2929 8593 41040;41041 41046 41046 1 EVNVSPCPTQPCQLSK PVQFKDCGSVDGVIKEVNVSPCPTQPCQLS VNVSPCPTQPCQLSKGQSYSVNVTFTSNIQ K E V S K G 0 0 1 0 2 2 1 0 0 0 1 1 0 0 3 2 1 0 0 2 0 0 16 0 1842.8604 G3V2V8;J3KMY5;H0YIZ1;G3V3E8;E7EMS2;G3V3D1;P61916 G3V2V8 36 51 NPC2 Epididymal secretory protein E1 yes no 2 0.00013574 56.956 By MS/MS 1 1.0596 0.91032 NaN 1 Median NaN NaN NaN 0 0 Median 1.0596 0.91032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3657300 1732900 1924400 0 0 0 3657300 1732900 1924400 0 0 0 0 0 0 0 0 0 0 0 0 8268 858 8594 41042 41047;41048 41048 2 EVPAVPETLK ______________________________ EEKKKEVPAVPETLKKKRRNFAELKIKRLR K E V L K K 1 0 0 0 0 0 2 0 0 0 1 1 0 0 2 0 1 0 0 2 0 0 10 0 1081.6019 P18124 P18124 10 19 RPL7 60S ribosomal protein L7 yes yes 2 0.00036076 87.258 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 2 0.80988 0.72092 10.647 11 Median 0.79677 0.72092 NaN 1 0 Median 0.83854 0.70315 7.0921 2 0 Median 0.69264 0.65802 0.35244 2 0 Median 0.88328 0.73465 13.84 2 0 Median 0.83333 0.84404 2.3482 2 0 Median 0.94539 0.7712 13.075 2 0 Median 279390000 148520000 130870000 84260000 44395000 39865000 36909000 19256000 17653000 28513000 16143000 12370000 24162000 11859000 12303000 74736000 40952000 33784000 30812000 15914000 14898000 8269 2056 8595 41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053 41049;41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062 41050 14 EVPAVPETLKK ______________________________ EKKKEVPAVPETLKKKRRNFAELKIKRLRK K E V K K K 1 0 0 0 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 2 0 0 11 1 1209.6969 P18124 P18124 10 20 RPL7 60S ribosomal protein L7 yes yes 2;3 3.3675E-05 98.898 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 4 4 0.90629 0.85138 11.588 20 Median 0.80083 0.77464 5.8353 2 0 Median 0.89567 0.8129 5.4985 4 0 Median 0.92847 0.97323 9.3455 4 2 Median 0.95659 0.83996 10.689 2 0 Median 0.80242 0.85286 17.583 4 0 Median 1.0144 0.86651 4.5624 4 1 Median 194730000 101950000 92778000 68009000 37346000 30663000 43925000 23052000 20872000 14961000 7280200 7680900 15801000 7493000 8308000 43857000 22889000 20968000 8175100 3889700 4285400 8270 2056 8596 41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070;41071;41072;41073 41063;41064;41065;41066;41067;41068;41069;41070;41071;41072;41073;41074;41075;41076;41077;41078;41079;41080;41081;41082;41083;41084;41085;41086;41087;41088;41089;41090;41091;41092;41093;41094;41095;41096 41082 34 EVPEHITEEELK AATREFIEMWRLLGREVPEHITEEELKTLM LGREVPEHITEEELKTLMECVSNTAKKKYL R E V L K T 0 0 0 0 0 0 5 0 1 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1451.7144 Q7L0Y3;C9JVB6 Q7L0Y3 107 118 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2;3 0.025426 48.44 By MS/MS 2 0.95603 1.0206 19.73 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95603 1.0206 19.73 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8305100 3793800 4511300 0 0 0 0 0 0 8305100 3793800 4511300 0 0 0 0 0 0 0 0 0 8271 3218 8597 41074;41075 41097;41098 41098 2 EVPEYLHHVNK NRLYAAEGQKLMQEREVPEYLHHVNKRLEE MQEREVPEYLHHVNKRLEEEADRLITYLDQ R E V N K R 0 0 1 0 0 0 2 0 2 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1363.6884 Q13620;K4DI93;A6NE76 Q13620 409 419 CUL4B Cullin-4B yes no 3 0.00055192 55.721 By MS/MS By MS/MS By MS/MS 1 1 2 0.8617 0.79332 35.494 4 Median 0.69557 0.6743 NaN 1 0 Median 1.0675 0.93335 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0416 0.88815 55.889 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9937200 4871100 5066100 3084600 1613800 1470800 5068000 2305600 2762400 0 0 0 1784500 951690 832820 0 0 0 0 0 0 8272 1358 8598 41076;41077;41078;41079 41099;41100;41101;41102;41103 41100 5 EVPEYLHHVNKR NRLYAAEGQKLMQEREVPEYLHHVNKRLEE QEREVPEYLHHVNKRLEEEADRLITYLDQT R E V K R L 0 1 1 0 0 0 2 0 2 0 1 1 0 0 1 0 0 0 1 2 0 0 12 1 1519.7896 Q13620;K4DI93;A6NE76 Q13620 409 420 CUL4B Cullin-4B yes no 3 0.020707 22.72 By MS/MS 2 0.91509 0.93933 13.565 2 Median 0.91509 0.93933 13.565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2152000 1096700 1055400 2152000 1096700 1055400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8273 1358 8599 41080;41081 41104 41104 1 EVPFADLSNMEIGMK DMWSFAVLLWELVTREVPFADLSNMEIGMK EVPFADLSNMEIGMKVALEGLRPTIPPGIS R E V M K V 1 0 1 1 0 0 2 1 0 1 1 1 2 1 1 1 0 0 0 1 0 0 15 0 1679.7899 Q13418;A0A0A0MTH3 Q13418 389 403 ILK Integrin-linked protein kinase yes no 2 3.3831E-09 98.353 By MS/MS By matching By matching 2 1 1 0.97303 0.95964 35.589 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97303 0.95964 5.4456 2 0 Median NaN NaN NaN 0 0 Median 1.7222 1.6587 NaN 1 0 Median 0.83094 0.70814 NaN 1 0 Median 10529000 4890700 5638000 0 0 0 0 0 0 8871400 4185200 4686200 0 0 0 1204300 444620 759720 453000 260860 192140 8274 190 8600 41082;41083;41084;41085 41105 41105 1 EVPIPEHIDIYHLTR NGIGKSMLLSAIGKREVPIPEHIDIYHLTR EVPIPEHIDIYHLTREMPPSDKTPLHCVME R E V T R E 0 1 0 1 0 0 2 0 2 3 1 0 0 0 2 0 1 0 1 1 0 0 15 0 1830.9628 Q9UG63;C9JHK9;C9JZV3 Q9UG63 135 149 ABCF2 ATP-binding cassette sub-family F member 2 yes no 3 0.0032714 28.58 By matching By MS/MS By matching 1 1 1 1.1794 0.99381 23.776 3 Median 0.78862 0.77115 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1829 1.2402 NaN 1 0 Median 1.1794 0.99381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9964400 4671100 5293300 4339300 2328600 2010600 0 0 0 5084300 2072700 3011600 540830 269780 271050 0 0 0 0 0 0 8275 4262 8601 41086;41087;41088 41106 41106 1 EVPIVQTETK VTISDASQRTEISTKEVPIVQTETKTITYE EISTKEVPIVQTETKTITYESPQIDGGAGG K E V T K T 0 0 0 0 0 1 2 0 0 1 0 1 0 0 1 0 2 0 0 2 0 0 10 0 1142.6183 O43491;E9PHY5;Q6ZSX4;Q6R5J7;E9PN54 O43491 893 902 EPB41L2 Band 4.1-like protein 2 yes no 2 0.026168 49.418 By MS/MS By MS/MS 1 1 0.95954 0.87972 2.5433 2 Median 0.8701 0.86404 NaN 1 1 Median 1.0582 0.89569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13015000 5744900 7270200 2335100 1117100 1218000 10680000 4627700 6052300 0 0 0 0 0 0 0 0 0 0 0 0 8276 1573 8602 41089;41090 41107;41108 41107 2 EVPLVFPK HTTTNVFHFTFMSEKEVPLVFPKTYGESML FTFMSEKEVPLVFPKTYGESMLYLDGQRHF K E V P K T 0 0 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 0 2 0 0 8 0 927.54295 Q9Y305 Q9Y305 400 407 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.016506 49.358 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1.0646 0.90914 25.634 5 Median 0.69496 0.64313 NaN 1 0 Median 1.0909 0.9335 3.7397 2 0 Median 0.63384 0.62487 NaN 1 0 Median 1.2527 1.117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24262000 13975000 10287000 14478000 8714200 5763600 3306100 1591500 1714600 4994700 3093700 1901000 1483000 575640 907320 0 0 0 0 0 0 8277 4400 8603 41091;41092;41093;41094;41095 41109;41110;41111;41112;41113 41109 5 EVPLWVFGLR RDHLKVMRVKCEELREVPLWVFGLRGLEEL CEELREVPLWVFGLRGLEELHLEGLFPQEL R E V L R G 0 1 0 0 0 0 1 1 0 0 2 0 0 1 1 0 0 1 0 2 0 0 10 0 1214.6812 Q6NSJ5 Q6NSJ5 498 507 LRRC8E Volume-regulated anion channel subunit LRRC8E yes yes 2 0.010957 43.246 By MS/MS By matching 2 1 0.88718 0.88595 10.898 3 Plateau 0.88989 0.88239 0.56858 2 0 Median 0.8149 0.73071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1397900 733670 664210 1219200 645130 574040 178710 88547 90162 0 0 0 0 0 0 0 0 0 0 0 0 8278 3142 8604 41096;41097;41098 41114 41114 1 EVPPGSAIIHIK SQASTTVDINTQVEKEVPPGSAIIHIKKHQ VEKEVPPGSAIIHIKKHQVSVEGTNQTDVK K E V I K K 1 0 0 0 0 0 1 1 1 3 0 1 0 0 2 1 0 0 0 1 0 0 12 0 1259.7238 Q14676 Q14676 528 539 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.001205 43.549 By MS/MS By MS/MS 2 1 0.81254 0.86795 3.0576 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78268 0.86115 4.2761 2 0 Median 0.95625 0.86795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12129000 6719100 5410000 0 0 0 0 0 0 10543000 5966100 4577000 1586000 753030 832920 0 0 0 0 0 0 8279 2887 8605 41099;41100;41101 41115;41116;41117;41118;41119;41120 41115 6 EVPPTETVPQVK NPIDIEVDQNKESKKEVPPTETVPQVKKEK SKKEVPPTETVPQVKKEKHSTQAKNRAKRK K E V V K K 0 0 0 0 0 1 2 0 0 0 0 1 0 0 3 0 2 0 0 3 0 0 12 0 1322.7082 Q9UKL0 Q9UKL0 286 297 RCOR1 REST corepressor 1 yes yes 2 0.0059758 39.622 By MS/MS 1 0.47175 0.484 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47175 0.484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3003600 2103400 900260 0 0 0 0 0 0 3003600 2103400 900260 0 0 0 0 0 0 0 0 0 8280 4312 8606 41102 41121 41121 1 EVPSKEEPSPVKAEVAEK DKPIKTETKPSVTEKEVPSKEEPSPVKAEV SKEEPSPVKAEVAEKQATDVKPKAAKEKTV K E V E K Q 2 0 0 0 0 0 5 0 0 0 0 3 0 0 3 2 0 0 0 3 0 0 18 2 1952.0102 P46821;D6RA32;D6RA40 P46821 606 623 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 0.0082852 24.041 By MS/MS By MS/MS 1 2 0.7753 0.78578 22.794 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54766 0.63451 NaN 1 0 Median 0.80243 0.88674 17.095 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4663200 2545200 2118000 0 0 0 0 0 0 2070000 1248700 821280 2593200 1296500 1296700 0 0 0 0 0 0 8281 2347 8607 41103;41104;41105 41122;41123;41124;41125 41123 4 EVPVPTPAPVEVPVPER EERPAALPSASPPPREVPVPTPAPVEVPVP PVPTPAPVEVPVPERVAGSPVTPLPEQEAS R E V E R V 1 1 0 0 0 0 3 0 0 0 0 0 0 0 6 0 1 0 0 5 0 0 17 0 1810.9829 O15047 O15047 1083 1099 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 2 1.5187E-05 68.44 By MS/MS 1 0.22294 0.24757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22294 0.24757 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2219500 1726700 492810 0 0 0 0 0 0 2219500 1726700 492810 0 0 0 0 0 0 0 0 0 8282 1516 8608 41106 41126 41126 1 EVPYFNYNAK PNDDLKKLARKGGIREVPYFNYNAKPALDI KGGIREVPYFNYNAKPALDIWPYPSPRPTF R E V A K P 1 0 2 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 2 1 0 0 10 0 1243.5873 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1865 1874 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00090104 85.064 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8283 2762 8609 41107;41108 41127;41128 41127 2 EVQDGIAPR PVPESGDGERVPEQKEVQDGIAPRMFKALI RVPEQKEVQDGIAPRMFKALIGKGHPEFST K E V P R M 1 1 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 983.50361 P45974 P45974 407 415 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0012859 83.206 By MS/MS By MS/MS 1 2 0.9197 0.85822 8.8286 3 Median 0.85616 0.85822 NaN 1 0 Median 0.99588 0.85478 12.481 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9672600 4504500 5168200 1332500 695990 636540 8340100 3808500 4531600 0 0 0 0 0 0 0 0 0 0 0 0 8284 2332 8610 41109;41110;41111 41129;41130;41131;41132;41133 41132 5 EVQDLFEAQGNDR RRAATECMCNLAMSKEVQDLFEAQGNDRLK SKEVQDLFEAQGNDRLKLLVLYSGEDDELL K E V D R L 1 1 1 2 0 2 2 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 13 0 1519.6903 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 947 959 UNC45A Protein unc-45 homolog A yes no 2 2.0352E-06 118.4 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.87369 0.93904 23.42 5 Median 0.97177 0.93904 NaN 1 0 Median 1.1073 0.96844 NaN 1 0 Median 0.80411 0.85912 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87369 0.97404 NaN 1 0 Median 0.6691 0.56001 NaN 1 0 Median 16836000 10204000 6631900 6334300 3753400 2580800 1704500 830740 873760 4654000 3455600 1198300 0 0 0 2296700 1209900 1086800 1846200 954040 892190 8285 335 8611 41112;41113;41114;41115;41116 41134 41134 1 EVQEFYKDTYNK AAAIWGYSHKDEVIKEVQEFYKDTYNKLKT VIKEVQEFYKDTYNKLKTKDEPQRETLKAI K E V N K L 0 0 1 1 0 1 2 0 0 0 0 2 0 1 0 0 1 0 2 1 0 0 12 1 1562.7253 A6NNI4;A0A2R8Y478;G8JLH6;P21926;A0A087WU13 A6NNI4 51 62 CD9 Tetraspanin;CD9 antigen yes no 2;3 1.8727E-05 147.75 By MS/MS By MS/MS 2 3 0.82659 0.82408 27.603 5 Median 0.84986 0.8467 3.8306 2 0 Median 0.82175 0.72658 38.94 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47822000 26802000 21020000 39723000 22563000 17159000 8099400 4238500 3861000 0 0 0 0 0 0 0 0 0 0 0 0 8286 360 8612 41117;41118;41119;41120;41121 41135;41136;41137;41138;41139;41140;41141 41135 7 EVQGFESATFLGYFK VQLDDYLNGRAVQHREVQGFESATFLGYFK EVQGFESATFLGYFKSGLKYKKGGVASGFK R E V F K S 1 0 0 0 0 1 2 2 0 0 1 1 0 3 0 1 1 0 1 1 0 0 15 0 1721.8301 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14;A0A0U1RQL8;Q5T0I0 A0A0A0MS51 114 128 GSN Gelsolin yes no 2 0.043849 34.755 By MS/MS 1 0.85352 0.83715 NaN 1 Median 0.85352 0.83715 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2333200 1265900 1067300 2333200 1265900 1067300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 8287 176 8613 41122 41142 41142 1 EVQLAQIFEPLSR AKQAVHCIHAIFTNKEVQLAQIFEPLSRSL NKEVQLAQIFEPLSRSLNADVPEQLITPLV K E V S R S 1 1 0 0 0 2 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 13 0 1528.8249 Q29RF7;H0Y9L6 Q29RF7 751 763 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.0001472 83.31 By MS/MS By MS/MS By MS/MS 2 2 2 1.003 0.92907 9.0991 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83877 0.91023 0.30204 2 0 Median 1.057 0.91297 5.0677 2 0 Median 1.0226 1.0767 4.3008 2 1 Median NaN NaN NaN 0 0 Median 17663000 9008200 8655000 0 0 0 0 0 0 13949000 7257800 6691200 1604300 761490 842860 2109900 988920 1120900 0 0 0 8288 3003 8614 41123;41124;41125;41126;41127;41128 41143;41144;41145;41146;41147;41148;41149;41150;41151;41152;41153 41152 11 EVQLEELEAAR QCEEVARALGKESLREVQLEELEAARDLVS ESLREVQLEELEAARDLVSKEGFRRARHVV R E V A R D 2 1 0 0 0 1 4 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1285.6514 P51570;K7EII7 P51570 257 267 GALK1 Galactokinase yes no 2 0.0031605 79.974 By MS/MS By matching By MS/MS 1 1 1 1.1346 1.1321 16.809 3 Median 0.89824 0.89231 NaN 1 1 Median 1.3084 1.1321 NaN 1 0 Median 1.1346 1.2345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20170000 9143200 11027000 7709000 4063000 3646000 3536600 1412600 2124000 8924300 3667600 5256700 0 0 0 0 0 0 0 0 0 8289 2434 8615 41129;41130;41131 41154;41155 41154 1 EVQMGDFVR DVVIERYHIPRACPREVQMGDFVRYHYNGT PRACPREVQMGDFVRYHYNGTFEDGKKFDS R E V V R Y 0 1 0 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1079.507 Q96AY3;K7EM43;K7ELI6 Q96AY3 58 66 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00052767 117.4 By MS/MS By MS/MS By MS/MS 2 2 1 1.019 1.0264 20.77 5 Median 0.96319 0.91175 8.035 2 0 Median 1.5522 1.3614 0.45123 2 0 Median 0.98839 1.0264 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48770000 23183000 25587000 27675000 14654000 13021000 15172000 5780100 9391600 5923300 2748500 3174800 0 0 0 0 0 0 0 0 0 8290 3603 8616 41132;41133;41134;41135;41136 41156;41157;41158;41159;41160;41161;41162 41158 7 EVQMHSFPLQFTLHCALLANK NTPVEKLTDYCKKLKEVQMHSFPLQFTLHC FPLQFTLHCALLANKTDLAKALMKAVKEEG K E V N K T 2 0 1 0 1 2 1 0 2 0 4 1 1 2 1 1 1 0 0 1 0 0 21 0 2483.2454 P42704;B8ZZ38;A0A0C4DG06 P42704 399 419 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 0.040566 10.981 By MS/MS 1 1.2418 1.0818 NaN 1 Median NaN NaN NaN 0 0 Median 1.2418 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1440600 630640 809960 0 0 0 1440600 630640 809960 0 0 0 0 0 0 0 0 0 0 0 0 8291 2315 8617 41137 41163 41163 1 EVQQFHPAVR GYNVLLSLNKGDILREVQQFHPAVRNSSEV GDILREVQQFHPAVRNSSEVKFAVQAFAAL R E V V R N 1 1 0 0 0 2 1 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1209.6255 O60318 O60318 823 832 MCM3AP Germinal-center associated nuclear protein yes yes 3 0.0069128 35.511 By MS/MS By matching 1 1 0.86723 0.83471 8.8585 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70608 0.78403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0652 0.88867 NaN 1 0 Median 2102100 1110600 991490 0 0 0 0 0 0 1567200 886580 680640 0 0 0 0 0 0 534890 224040 310850 8292 1612 8618 41138;41139 41164 41164 1 EVQQGEEFER KVNTSKGFLIDGYPREVQQGEEFERRIGQP DGYPREVQQGEEFERRIGQPTLLLYVDAGP R E V E R R 0 1 0 0 0 2 4 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1249.5575 Q5T9B7;P00568;H0YID2 Q5T9B7 114 123 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.0007323 99.802 By matching By MS/MS By MS/MS 1 1 1 1.1854 1.078 5.8001 3 Median 1.1359 1.078 NaN 1 0 Median 1.1854 1.0022 NaN 1 0 Median 1.1998 1.1239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19971000 9748100 10223000 14544000 7168800 7375400 3994800 1871000 2123800 1431900 708200 723720 0 0 0 0 0 0 0 0 0 8293 1825 8619 41140;41141;41142 41165;41166;41167;41168 41168 4 EVQQGEEFERR KVNTSKGFLIDGYPREVQQGEEFERRIGQP GYPREVQQGEEFERRIGQPTLLLYVDAGPE R E V R R I 0 2 0 0 0 2 4 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 11 1 1405.6586 Q5T9B7;P00568;H0YID2 Q5T9B7 114 124 AK1 Adenylate kinase isoenzyme 1 yes no 2;3 3.5079E-05 83.862 By MS/MS By MS/MS 1 2 1.0937 1.1123 13.871 3 Plateau 1.0937 1.1691 NaN 1 0 Median 1.0942 0.92927 5.7901 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11411000 5296800 6114300 5395300 2527400 2867800 6015900 2769400 3246500 0 0 0 0 0 0 0 0 0 0 0 0 8294 1825 8620 41143;41144;41145 41169;41170;41171;41172;41173 41172 5 EVQQTLEELR YRKELINNLDADSLREVQQTLEELRAVAKK ADSLREVQQTLEELRAVAKKVHSTIQKIKK R E V L R A 0 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1243.6408 Q8N5C6 Q8N5C6 263 272 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 5.6804E-05 126.41 By MS/MS By MS/MS 2 1 1.2235 1.1837 53.793 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73585 0.80918 NaN 1 1 Median 2.0343 1.7315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12245000 6742600 5502500 0 0 0 0 0 0 9814000 6040200 3773800 2431100 702350 1728700 0 0 0 0 0 0 8295 3377 8621 41146;41147;41148 41174;41175;41176 41174 3 EVQSNMVPR RGTQASHQVLRDILKEVQSNMVPRSMLKEW LRDILKEVQSNMVPRSMLKEWALHTFPNAT K E V P R S 0 1 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 0 0 2 0 0 9 0 1058.5179 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3629 3637 TRRAP Transformation/transcription domain-associated protein yes no 2 0.064451 42.109 By MS/MS 1 0.67836 0.75937 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67836 0.75937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 734930 432320 302610 0 0 0 0 0 0 734930 432320 302610 0 0 0 0 0 0 0 0 0 8296 991 8622 41149 41177 41177 1 EVQTGWEDLR AGHPAQAVAINARLREVQTGWEDLRATMRR NARLREVQTGWEDLRATMRRREESLGEARR R E V L R A 0 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 10 0 1231.5833 O15020 O15020 1042 1051 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00052436 92.062 By matching By MS/MS By matching 1 1 1 1.363 1.1628 28.902 3 Median NaN NaN NaN 0 0 Median 1.363 1.1628 NaN 1 0 Median 0.76059 0.84081 NaN 1 0 Median 1.6526 1.4966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5545100 2940300 2604800 0 0 0 833320 301490 531830 4086300 2431500 1654800 625520 207300 418210 0 0 0 0 0 0 8297 1512 8623 41150;41151;41152 41178 41178 1 EVQTIEVYK GEDGAVRLWDLRTAKEVQTIEVYKHEECSR DLRTAKEVQTIEVYKHEECSRPHNGRWIGC K E V Y K H 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 1 0 1 2 0 0 9 0 1107.5812 Q86W42 Q86W42 202 210 THOC6 THO complex subunit 6 homolog yes yes 2 0.0050508 58.815 By matching By MS/MS 1 1 0.98572 0.88856 2.9243 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94281 0.90713 NaN 1 0 Median 1.0306 0.87038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11998000 5837600 6160500 0 0 0 0 0 0 10261000 5010200 5250400 1737400 827330 910110 0 0 0 0 0 0 8298 3290 8624 41153;41154 41179 41179 1 EVQTNDLK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI MMEIMTREVQTNDLKEVVNKLIPDSIGKDI R E V L K E 0 0 1 1 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 945.47673 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;D6RB09;D6R9B6 P61247 175 182 RPS3A 40S ribosomal protein S3a yes no 2 0.0055542 75.109 By MS/MS By MS/MS 1 1 1.1198 1.0102 3.1911 2 Median 1.07 1.0332 NaN 1 0 Median 1.1719 0.98762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6256200 2869300 3387000 3977100 1854300 2122700 2279200 1014900 1264200 0 0 0 0 0 0 0 0 0 0 0 0 8299 2553 8625 41155;41156 41180;41181;41182;41183 41180 4 EVQTNDLKEVVNK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI TREVQTNDLKEVVNKLIPDSIGKDIEKACQ R E V N K L 0 0 2 1 0 1 2 0 0 0 1 2 0 0 0 0 1 0 0 3 0 0 13 1 1514.794 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;D6RB09;D6R9B6 P61247 175 187 RPS3A 40S ribosomal protein S3a yes no 2;3 8.4292E-22 201.09 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 4 1 3 5 2 1.1374 1.1014 21.021 19 Median 1.0548 1.0197 10.028 4 0 Median 1.2023 1.0819 14.852 4 0 Median 1.2897 1.3509 NaN 1 0 Median 1.2172 1.0488 6.8355 3 0 Plateau 1.181 1.2594 8.32 5 0 Median 1.4436 1.2236 71.206 2 1 Median 289820000 129050000 160770000 79078000 37786000 41292000 90528000 41323000 49205000 4285500 1995400 2290000 39646000 16832000 22814000 59001000 25145000 33856000 17278000 5968700 11310000 8300 2553 8626 41157;41158;41159;41160;41161;41162;41163;41164;41165;41166;41167;41168;41169;41170;41171;41172;41173;41174;41175 41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194;41195;41196;41197;41198;41199;41200;41201;41202;41203;41204;41205;41206 41189 23 EVQTNELKAEK QEDKLEGGAAKRETKEVQTNELKAEKASQK RETKEVQTNELKAEKASQKVTKKTKTVQCK K E V E K A 1 0 1 0 0 1 3 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1287.667 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 196 206 EPB41L2 Band 4.1-like protein 2 yes no 3 0.063342 14.561 By MS/MS 1 1.0092 1.1545 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0092 1.1545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1597900 754010 843860 0 0 0 0 0 0 1597900 754010 843860 0 0 0 0 0 0 0 0 0 8301 1573 8627 41176 41207 41207 1 EVQVEHIK PCDIGHRLEYGGLGREVQVEHIKAYVTKSP EYGGLGREVQVEHIKAYVTKSPVDAGKAVI R E V I K A 0 0 0 0 0 1 2 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 980.5291 Q96DG6 Q96DG6 24 31 CMBL Carboxymethylenebutenolidase homolog yes yes 2 0.010576 58.604 By matching By MS/MS By matching 1 1 1 1.0102 0.96366 14.475 3 Median 0.9911 0.92062 NaN 1 0 Median 1.4129 1.2065 NaN 1 0 Median 1.0102 0.96366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7610100 3685300 3924900 5120800 2591700 2529100 1203300 461890 741460 1286000 631700 654320 0 0 0 0 0 0 0 0 0 8302 3626 8628 41177;41178;41179 41208;41209 41209 2 EVSAYIK TEPAYSEKRYDEIVKEVSAYIKKIGYNPAT KRYDEIVKEVSAYIKKIGYNPATVPFVPIS K E V I K K 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 7 0 808.43307 A0A2U3TZH3;Q05639 A0A2U3TZH3 173 179 EEF1A2 Elongation factor 1-alpha 2 yes no 2 0.047302 41.502 By MS/MS 1 1.6865 1.452 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6865 1.452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1378700 469860 908840 0 0 0 0 0 0 0 0 0 1378700 469860 908840 0 0 0 0 0 0 8303 404 8629 41180 41210 41210 1 EVSDFIQDSGQIK ______________________________ EKEVSDFIQDSGQIKKKFQPMNKIERSILH K E V I K K 0 0 0 2 0 2 1 1 0 2 0 1 0 1 0 2 0 0 0 1 0 0 13 0 1464.7096 I3L0X5;O75391;I3L0Q5;I3L4C3 I3L0X5 4 16 SPAG7 Sperm-associated antigen 7 yes no 2 0.0029978 62.303 By MS/MS 1 0.96783 0.91811 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96783 0.91811 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4042500 1712600 2329900 0 0 0 0 0 0 4042500 1712600 2329900 0 0 0 0 0 0 0 0 0 8304 1276 8630 41181 41211 41211 1 EVSDLIK KLQRERGLGSEKHRKEVSDLIKECRQSLAE LGSEKHRKEVSDLIKECRQSLAESLFAWAC K E V I K E 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 7 0 802.44363 Q92621 Q92621 216 222 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.017757 64.803 By MS/MS 1 0.83069 0.92581 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83069 0.92581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3853400 2082700 1770700 0 0 0 0 0 0 3853400 2082700 1770700 0 0 0 0 0 0 0 0 0 8305 3547 8631 41182 41212 41212 1 EVSEDRRQDLLSR LQGQSVSVWELLFYREVSEDRRQDLLSRYR YREVSEDRRQDLLSRYRAGTLTVEELGATL R E V S R Y 0 3 0 2 0 1 2 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 13 2 1601.8121 P58107;A0A075B730 P58107 2462 2474 EPPK1 Epiplakin yes no 3;4 0.00018124 69.716 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 2 3 1.2846 1.3911 19.871 12 Median 1.256 1.4 26.186 5 0 Median 1.2894 1.2151 10.83 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.228 1.528 12.405 2 0 Median 1.3458 1.3825 14.205 3 0 Median 73991000 30387000 43604000 52595000 21866000 30729000 10104000 4053200 6051000 0 0 0 0 0 0 2896600 1296000 1600700 8395600 3172800 5222800 8306 2520 8632 41183;41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194 41213;41214;41215;41216;41217;41218;41219;41220;41221;41222;41223;41224;41225;41226;41227;41228 41224 16 EVSEEQPVVTLEK EKQGEVIVSIEEKPKEVSEEQPVVTLEKQG PKEVSEEQPVVTLEKQGTAVEVEAESLDPT K E V E K Q 0 0 0 0 0 1 4 0 0 0 1 1 0 0 1 1 1 0 0 3 0 0 13 0 1485.7563 P49321;E9PPR5 P49321 276 288 NASP Nuclear autoantigenic sperm protein yes no 2 4.5384E-07 108.31 By MS/MS By MS/MS 2 2 0.86045 0.9277 18.715 4 Median 0.8428 0.81665 3.8752 2 0 Median 1.0933 1.1061 10.724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122130000 61046000 61084000 88591000 47733000 40858000 33539000 13313000 20226000 0 0 0 0 0 0 0 0 0 0 0 0 8307 2376 8633 41195;41196;41197;41198 41229;41230;41231;41232 41229 4 EVSFQSTGESEWK VGQEDEAESDIFSIREVSFQSTGESEWKDT IREVSFQSTGESEWKDTNYTLNTDSLDWAL R E V W K D 0 0 0 0 0 1 3 1 0 0 0 1 0 1 0 3 1 1 0 1 0 0 13 0 1512.6733 Q07021;I3L3Q7;I3L3B0 Q07021 208 220 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 3.8784E-08 169.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 1 1.3294 1.1132 100.78 9 Median 1.2485 1.1851 23.463 2 0 Median 1.3031 1.0921 153.04 4 0 Median 1.1868 1.1137 NaN 1 0 Median 1.4826 1.2292 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3294 1.0948 NaN 1 0 Median 369920000 167800000 202120000 203430000 94043000 109380000 56334000 24255000 32080000 82795000 37657000 45137000 6203900 2580800 3623000 0 0 0 21159000 9266800 11892000 8308 2729 8634 41199;41200;41201;41202;41203;41204;41205;41206;41207 41233;41234;41235;41236;41237;41238;41239;41240;41241;41242;41243;41244;41245 41233 13 EVSHLNALEER VCEFCQPRESELYQKEVSHLNALEERFSRL LYQKEVSHLNALEERFSRLWTQCQRCQGSL K E V E R F 1 1 1 0 0 0 3 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1295.647 M0R2B7;P28340;A0A087WYJ2;M0R3H8 M0R2B7 1066 1076 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2;3 0.00019593 75.294 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.81045 0.7427 28.082 6 Median 0.58447 0.5695 29.071 2 1 Median 0.98266 0.83102 9.4379 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48503 0.51679 NaN 1 0 Median NaN NaN NaN 0 0 Median 17884000 9492900 8391500 6119400 3512800 2606600 10090000 4823300 5267000 0 0 0 0 0 0 1674700 1156800 517850 0 0 0 8309 1436 8635 41208;41209;41210;41211;41212;41213;41214;41215 41246;41247;41248;41249;41250;41251 41246 6 EVSSATNALR SRSLKMRGQAFVIFKEVSSATNALRSMQGF FVIFKEVSSATNALRSMQGFPFYDKPMRIQ K E V L R S 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1046.5356 P09012;M0R221;M0R2B8;M0QZG7;M0QXK2;M0R0G9 P09012 61 70 SNRPA U1 small nuclear ribonucleoprotein A yes no 2 1.997E-05 147.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1.1998 1.0774 8.2187 8 Median 1.1785 1.1132 NaN 1 0 Median 1.4003 1.1686 NaN 1 0 Median 1.005 0.97636 NaN 1 0 Median 1.3402 1.0886 9.4434 2 0 Median 1.1116 1.109 8.7037 2 0 Median 1.1986 0.96759 NaN 1 0 Median 107020000 49858000 57159000 5257100 2372900 2884200 4254600 1746800 2507800 27608000 13951000 13656000 48337000 21695000 26641000 12490000 6020200 6469800 9070700 4071200 4999500 8310 1910 8636 41216;41217;41218;41219;41220;41221;41222;41223 41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264;41265;41266 41262 15 EVSSSFDHVIK ESDKGEELGPGNVQKEVSSSFDHVIKETTR NVQKEVSSSFDHVIKETTREMIARSAATLI K E V I K E 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 3 0 0 0 2 0 0 11 0 1246.6194 Q9Y6C9;E9PIE4 Q9Y6C9 112 122 MTCH2 Mitochondrial carrier homolog 2 yes no 2;3 0.00030912 72.325 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 1.3438 1.1258 17.775 10 Median 1.1326 1.0274 21.31 3 0 Plateau 1.379 1.1263 3.3253 3 0 Plateau NaN NaN NaN 0 0 Median 1.5596 1.3182 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4079 1.1847 3.1844 3 0 Median 94972000 41939000 53034000 59414000 28205000 31209000 27445000 10618000 16827000 0 0 0 1850000 760700 1089300 0 0 0 6263200 2355300 3907900 8311 4488 8637 41224;41225;41226;41227;41228;41229;41230;41231;41232;41233 41267;41268;41269;41270;41271;41272;41273;41274 41267 8 EVSSSFDHVIKETTR ESDKGEELGPGNVQKEVSSSFDHVIKETTR EVSSSFDHVIKETTREMIARSAATLITHPF K E V T R E 0 1 0 1 0 0 2 0 1 1 0 1 0 1 0 3 2 0 0 2 0 0 15 1 1733.8584 Q9Y6C9;E9PIE4 Q9Y6C9 112 126 MTCH2 Mitochondrial carrier homolog 2 yes no 3 0.013556 33.796 By MS/MS 1 1.4127 1.4177 NaN 1 Median 1.4127 1.4177 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10505000 4285100 6219700 10505000 4285100 6219700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8312 4488 8638 41234 41275 41275 1 EVSTYIK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT KRYEEIVKEVSTYIKKIGYNPDTVAFVPIS K E V I K K 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 0 7 0 838.44363 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 173 179 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2 0.012264 78.616 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 7 5 6 1 4 1.1115 0.95303 21.234 29 Median 1.1905 1.1303 12.768 6 0 Median 1.0063 0.89955 5.8367 7 2 Median 1.2269 1.2136 8.2764 5 0 Median 1.0372 0.90341 12.19 6 0 Median 2.2568 2.151 NaN 1 0 Median 1.1549 0.94313 5.865 4 0 Median 530870000 253150000 277730000 38494000 17621000 20873000 175720000 85463000 90255000 133230000 60594000 72634000 163260000 80759000 82503000 4105100 1444300 2660800 16067000 7267500 8799200 8313 2632 8639 41235;41236;41237;41238;41239;41240;41241;41242;41243;41244;41245;41246;41247;41248;41249;41250;41251;41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263 41276;41277;41278;41279;41280;41281;41282;41283;41284;41285;41286;41287;41288;41289;41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308 41301 33 EVSTYIKK TEPPYSQKRYEEIVKEVSTYIKKIGYNPDT RYEEIVKEVSTYIKKIGYNPDTVAFVPISG K E V K K I 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 1 1 0 1 1 0 0 8 1 966.5386 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 173 180 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2 0.032765 44.447 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 1.1652 1.1609 22.987 7 Median 1.1652 1.259 NaN 1 0 Median 1.1843 1.1173 5.4106 2 0 Median 1.3014 1.3632 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8223 1.8241 NaN 1 0 Median 1.0648 0.94957 2.1743 2 0 Median 25426000 11395000 14031000 1350200 591380 758840 12185000 5541600 6643600 7282700 3109700 4173000 0 0 0 90327 35872 54454 4517800 2116800 2401000 8314 2632 8640 41264;41265;41266;41267;41268;41269;41270 41309;41310;41311;41312;41313;41314;41315 41313 7 EVSVPTFSWEEIQK ______________________________ REVSVPTFSWEEIQKHNLRTDRWLVIDRKV R E V Q K H 0 0 0 0 0 1 3 0 0 1 0 1 0 1 1 2 1 1 0 2 0 0 14 0 1677.825 O95864 O95864 15 28 FADS2 Fatty acid desaturase 2 yes yes 2 8.2179E-05 83.397 By MS/MS 1 0.73707 0.73797 NaN 1 Median 0.73707 0.73797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10223000 5667800 4555500 10223000 5667800 4555500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8315 1800 8641 41271 41316 41316 1 EVSYNALASHIISEDGDNPEVGEAR IDPQVIQLLKAGKAKEVSYNALASHIISED IISEDGDNPEVGEAREVFDLPVVKPSWVIL K E V A R E 3 1 2 2 0 0 4 2 1 2 1 0 0 0 1 3 0 0 1 2 0 0 25 0 2671.2362 Q6ZW49;F8WC23;H7BZI8 Q6ZW49 39 63 PAXIP1 PAX-interacting protein 1 yes no 3 3.8124E-19 77.649 By MS/MS 1 0.60149 0.66154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60149 0.66154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6736000 4485000 2251000 0 0 0 0 0 0 6736000 4485000 2251000 0 0 0 0 0 0 0 0 0 8316 3203 8642 41272 41317 41317 1 EVTAAQVAR SIEECRNIIVQFGVREVTAAQVARVLGMMA VQFGVREVTAAQVARVLGMMARTHSGLTDG R E V A R V 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 9 0 943.50869 A5YKK6 A5YKK6 284 292 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.010073 48.561 By MS/MS 1 1.4297 1.2573 NaN 1 Median NaN NaN NaN 0 0 Median 1.4297 1.2573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 543770 257780 286000 0 0 0 543770 257780 286000 0 0 0 0 0 0 0 0 0 0 0 0 8317 503 8643 41273 41318 41318 1 EVTAIETK KKLGGANKEMTHLQKEVTAIETKLEQKRSD EMTHLQKEVTAIETKLEQKRSDRHNLLQAC K E V T K L 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 2 0 0 1 0 0 8 0 889.47566 Q14683;G8JLG1;V9GY57 Q14683 911 918 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.013566 52.786 By MS/MS By MS/MS By MS/MS 1 1 1 0.85928 0.91663 10.18 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85928 0.91663 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80113 0.84574 NaN 1 0 Median 1.2069 1.0353 NaN 1 0 Median 4873800 2598600 2275200 0 0 0 0 0 0 1279100 596110 682960 0 0 0 2599900 1520600 1079300 994800 481920 512880 8318 2889 8644 41274;41275;41276 41319;41320;41321;41322 41321 4 EVTAIETKLEQK KKLGGANKEMTHLQKEVTAIETKLEQKRSD LQKEVTAIETKLEQKRSDRHNLLQACKMQD K E V Q K R 1 0 0 0 0 1 3 0 0 1 1 2 0 0 0 0 2 0 0 1 0 0 12 1 1387.7559 Q14683;G8JLG1;V9GY57 Q14683 911 922 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 1.9601E-05 105.17 By matching By MS/MS By matching 1 2 1 0.93429 1.0352 24.146 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79569 0.91066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93429 1.0352 10.672 2 0 Median 1.9496 1.5572 NaN 1 0 Median 32229000 15337000 16891000 0 0 0 0 0 0 3354100 1687600 1666500 0 0 0 23836000 11806000 12030000 5038400 1843700 3194700 8319 2889 8645 41277;41278;41279;41280 41323 41323 1 EVTDKEQEFAAR EQFAAAAAHSTPVRREVTDKEQEFAARAAK VRREVTDKEQEFAARAAKQLEYQQLEDDKL R E V A R A 2 1 0 1 0 1 3 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 12 1 1421.6787 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;J3QR33;J3QS55;J3QKK4;J3KS70;J3KRD1;J3QKY2;J3QLU5;J3QRQ6 A0A0A0MRA8 61 72 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 2.5899E-05 98.943 By MS/MS 1 1.0146 0.96043 NaN 1 Median NaN NaN NaN 0 0 Median 1.0146 0.96043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287000 1026300 1260700 0 0 0 2287000 1026300 1260700 0 0 0 0 0 0 0 0 0 0 0 0 8320 156 8646 41281 41324 41324 1 EVTDMNLNVINEGGIDK PTSQGFTEVRDVFFKEVTDMNLNVINEGGI TDMNLNVINEGGIDKLGEYMEKLSRLAYHP K E V D K L 0 0 3 2 0 0 2 2 0 2 1 1 1 0 0 0 1 0 0 2 0 0 17 0 1859.8935 Q96TA1 Q96TA1 368 384 FAM129B Niban-like protein 1 yes yes 2 0.00042819 43.382 By matching By matching By MS/MS By matching 1 1 1 1 1.1264 1.078 4.8118 4 Median 1.1306 1.1249 NaN 1 0 Median 1.1221 1.0123 NaN 1 0 Median 1.0392 1.1056 NaN 1 0 Median 1.1841 1.0511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4118900 2006400 2112500 1628400 751420 876980 228090 103180 124910 2036000 1051100 984900 226440 100730 125710 0 0 0 0 0 0 8321 3743 8647 41282;41283;41284;41285 41325 41325 1 EVTEEEAER ARNNTGGSTGLPRRKEVTEEEAERFIHQVN GLPRRKEVTEEEAERFIHQVNQATVTIQRW K E V E R F 1 1 0 0 0 0 5 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 9 0 1090.4778 Q9UPN4;I3L2J8 Q9UPN4 255 263 CEP131 Centrosomal protein of 131 kDa yes no 2 0.0054507 57.59 By MS/MS By matching By matching 1 2 1 0.95437 0.91926 20.896 4 Median NaN NaN NaN 0 0 Median 1.4572 1.2833 NaN 1 0 Median 0.81031 0.84515 11.29 2 0 Median 1.06 0.92315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1779400 800850 978580 0 0 0 992410 385370 607030 463350 256870 206490 323670 158610 165050 0 0 0 0 0 0 8322 4355 8648 41286;41287;41288;41289 41326;41327 41326 2 EVTEPLNLNPAK RRHQFRWSEIQKGVREVTEPLNLNPAKRPR GVREVTEPLNLNPAKRPRRQDWDGELYENG R E V A K R 1 0 2 0 0 0 2 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1323.7034 Q8NFW8;F5GYM0 Q8NFW8 189 200 CMAS N-acylneuraminate cytidylyltransferase yes no 2 3.6272E-06 128.36 By MS/MS By MS/MS 1 1 0.80349 0.74708 20.862 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67333 0.64462 NaN 1 0 Median 0.95882 0.86584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89799000 48225000 41574000 0 0 0 0 0 0 39367000 22831000 16536000 50432000 25394000 25038000 0 0 0 0 0 0 8323 3441 8649 41290;41291 41328;41329;41330;41331;41332;41333;41334;41335 41328 8 EVTFSFIPR NILKVCPDLLNKYFKEVTFSFIPRAKSTWL LNKYFKEVTFSFIPRAKSTWLNNIKLLNKI K E V P R A 0 1 0 0 0 0 1 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1094.576 O60287 O60287 377 385 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0073226 51.854 By matching By MS/MS 1 1 0.73962 0.78384 5.6603 2 Median 0.8062 0.81585 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67853 0.75308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3644200 1904300 1739900 1892300 995730 896590 0 0 0 1751900 908550 843350 0 0 0 0 0 0 0 0 0 8324 1610 8650 41292;41293 41336 41336 1 EVTFVPGLYK QQMWVYDEDVGINYREVTFVPGLYKIFDEI GINYREVTFVPGLYKIFDEILVNAADNKQR R E V Y K I 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 2 0 0 10 0 1151.6227 P11388;J3KTB7;Q02880;E9PCY5 P11388 74 83 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0014687 65.246 By matching By MS/MS By matching By MS/MS By matching 1 4 2 3 2 1.1356 1.0284 26.319 11 Median 1.47 1.4442 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84763 0.93142 26.444 4 0 Median 1.2646 1.0955 27.848 2 0 Median 1.2244 1.2663 29.424 2 1 Median 1.318 1.1006 13.036 2 0 Median 126290000 70509000 55783000 3119600 1042200 2077400 0 0 0 54391000 29352000 25039000 3819200 1575100 2244100 59854000 36171000 23683000 5108400 2368200 2740100 8325 1963;2704 8651 41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305 41337;41338;41339;41340;41341 41339 5 EVTHNIHYETYR LLRDFVIRTHLQDLKEVTHNIHYETYRAKR DLKEVTHNIHYETYRAKRLNDNGGLPPGEG K E V Y R A 0 1 1 0 0 0 2 0 2 1 0 0 0 0 0 0 2 0 2 1 0 0 12 0 1560.7321 B1AHR1;A0A2R8Y4H2;Q9UH03 B1AHR1 250 261 SEPT3 Neuronal-specific septin-3 yes no 3 0.00042884 51.218 By MS/MS 1 0.79788 0.8645 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79788 0.8645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3389000 1749600 1639400 0 0 0 0 0 0 3389000 1749600 1639400 0 0 0 0 0 0 0 0 0 8326 363 8652 41306 41342 41342 1 EVTLGQVAK SEGRRRQLLRRYRQREVTLGQVAKLLEAET RRYRQREVTLGQVAKLLEAETQRQADIMLP R E V A K L 1 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 943.53385 P58107;A0A075B730 P58107 858 866 EPPK1 Epiplakin yes no 2 0.017299 41.84 By MS/MS 1 1.4134 1.2483 NaN 1 Median NaN NaN NaN 0 0 Median 1.4134 1.2483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10261000 3901400 6359100 0 0 0 10261000 3901400 6359100 0 0 0 0 0 0 0 0 0 0 0 0 8327 2520 8653 41307 41343;41344 41343 2 EVTLPFLFTPFK VQILEQFKVKMTQKKEVTLPFLFTPFK___ QKKEVTLPFLFTPFK_______________ K E V F K - 0 0 0 0 0 0 1 0 0 0 2 1 0 3 2 0 2 0 0 1 0 0 12 0 1437.7908 K7EPJ2;K7ELE1;A0A1W2PNW5;A0A1W2PPB6;A0A1W2PR74;A0A1W2PPR7;A0A1W2PQZ1;A0A1W2PNQ8;A0A1W2PQR8;A0A1W2PQP4;A0A1W2PNR0;A0A1W2PNH8;A0A1W2PS19;A0A1W2PQA9;O95427 K7EPJ2 380 391 PIGN GPI ethanolamine phosphate transferase 1 yes no 2 0.0006573 62.463 By MS/MS By matching By matching 1 1 2 0.77686 0.79248 18.314 4 Median 0.62522 0.62013 NaN 1 0 Median 0.92647 0.83793 NaN 1 0 Median 0.77686 0.84637 17.191 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666000 1029600 636320 1315900 839700 476220 34058 17054 17004 315990 172890 143100 0 0 0 0 0 0 0 0 0 8328 330 8654 41308;41309;41310;41311 41345 41345 1 EVTPEGLQMVK DRSQQKDKQSYRDLKEVTPEGLQMVKKNFE RDLKEVTPEGLQMVKKNFEWVAERVELLLK K E V V K K 0 0 0 0 0 1 2 1 0 0 1 1 1 0 1 0 1 0 0 2 0 0 11 0 1229.6326 P22234;E9PBS1;D6RF62 P22234 236 246 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.00018718 98.033 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1191 1.0398 8.3313 5 Median 1.0265 0.95003 13.282 2 0 Median 1.1745 1.0031 NaN 1 0 Median 1.0795 1.0398 NaN 1 0 Median 1.1785 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90881000 45986000 44896000 56844000 30675000 26169000 6617800 2874000 3743800 16507000 8355900 8151600 10912000 4080800 6831200 0 0 0 0 0 0 8329 909 8655 41312;41313;41314;41315;41316 41346;41347;41348;41349;41350;41351;41352;41353;41354;41355 41348 10 EVTPEGLQMVKK DRSQQKDKQSYRDLKEVTPEGLQMVKKNFE DLKEVTPEGLQMVKKNFEWVAERVELLLKS K E V K K N 0 0 0 0 0 1 2 1 0 0 1 2 1 0 1 0 1 0 0 2 0 0 12 1 1357.7275 P22234;E9PBS1;D6RF62 P22234 236 247 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 3 0.0032023 35.737 By MS/MS 1 0.96784 0.93004 NaN 1 Median 0.96784 0.93004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4377500 2104400 2273100 4377500 2104400 2273100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8330 909 8656 41317 41356 41356 1 EVTPILAQTQSSGPQTSTTPQVLSPTITSPPNALPR QTGTKSVFSQSGNSREVTPILAQTQSSGPQ VLSPTITSPPNALPRRSSRLFTSDSSTTKE R E V P R R 2 1 1 0 0 4 1 1 0 2 3 0 0 0 7 5 7 0 0 2 0 0 36 0 3713.9476 G5EA36 G5EA36 341 376 CDC27 no no 3 1.8488E-13 63.033 By MS/MS 1 0.25763 0.27488 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25763 0.27488 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5312800 4712600 600120 0 0 0 0 0 0 5312800 4712600 600120 0 0 0 0 0 0 0 0 0 8331 1135 8657 41318 41357;41358 41358 2 EVTPVSSIPVETHR DSLVVRGVAGLRDGKEVTPVSSIPVETHRA KEVTPVSSIPVETHRALASCHSLMQLDDGT K E V H R A 0 1 0 0 0 0 2 0 1 1 0 0 0 0 2 2 2 0 0 3 0 0 14 0 1549.81 Q9HD20 Q9HD20 556 569 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 3 0.0004026 48.351 By MS/MS 1 0.90213 0.73183 NaN 1 Median NaN NaN NaN 0 0 Median 0.90213 0.73183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10833000 6289300 4543700 0 0 0 10833000 6289300 4543700 0 0 0 0 0 0 0 0 0 0 0 0 8332 4034 8658 41319 41359 41359 1 EVTTEFTVDAR VKVSGPGVEPHGVLREVTTEFTVDARSLTA GVLREVTTEFTVDARSLTATGGNHVTARVL R E V A R S 1 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 3 0 0 2 0 0 11 0 1266.6092 Q14315 Q14315 1268 1278 FLNC Filamin-C yes yes 2 0.00015021 110.76 By MS/MS By MS/MS 1 2 1.3026 1.2626 40.102 3 Median 1.3026 1.2626 NaN 1 0 Median 1.6134 1.3324 56.543 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69481000 29221000 40260000 34255000 14390000 19865000 35227000 14831000 20395000 0 0 0 0 0 0 0 0 0 0 0 0 8333 2871 8659 41320;41321;41322 41360;41361;41362;41363;41364 41361 5 EVTTLTADPPDGIK NVENLPPHIIRLVYKEVTTLTADPPDGIKV KEVTTLTADPPDGIKVFPNEEDLTDLQVTI K E V I K V 1 0 0 2 0 0 1 1 0 1 1 1 0 0 2 0 3 0 0 1 0 0 14 0 1455.7457 Q16763;K7EPJ1;K7EM75 Q16763 19 32 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2 0.0032436 57.348 By MS/MS 1 0.74999 0.70284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74999 0.70284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10818000 6480000 4338400 0 0 0 0 0 0 10818000 6480000 4338400 0 0 0 0 0 0 0 0 0 8334 2997 8660 41323 41365 41365 1 EVTWEVLEGEVEK KAKDANNGNLQLRNKEVTWEVLEGEVEKEA NKEVTWEVLEGEVEKEALKKIIEDQQESLN K E V E K E 0 0 0 0 0 0 5 1 0 0 1 1 0 0 0 0 1 1 0 3 0 0 13 0 1545.7563 P05455 P05455 300 312 SSB Lupus La protein yes yes 2 5.6706E-07 106.4 By matching By MS/MS 1 1 1.0852 0.98004 9.7501 2 Median NaN NaN NaN 0 0 Median 1.2393 1.05 NaN 1 0 Median 0.95033 0.91475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31414000 15135000 16279000 0 0 0 13224000 5536500 7687500 18190000 9598000 8591500 0 0 0 0 0 0 0 0 0 8335 1867 8661 41324;41325 41366;41367 41366 2 EVTYELDHPGFQIR LIDVLKELNPSLNFKEVTYELDHPGFQIRD KEVTYELDHPGFQIRDSKGLHNVVYGIQRG K E V I R D 0 1 0 1 0 1 2 1 1 1 1 0 0 1 1 0 1 0 1 1 0 0 14 0 1702.8315 A5YKK6 A5YKK6 356 369 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.0032963 32.734 By MS/MS By matching By matching 1 1 1 0.78997 0.86482 9.7449 3 Median 0.78997 0.74599 NaN 1 0 Median 1.0638 0.89662 NaN 1 0 Median 0.78431 0.86482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13606000 7136600 6469000 6570000 3393500 3176500 2158400 1040100 1118300 4877200 2703000 2174200 0 0 0 0 0 0 0 0 0 8336 503 8662 41326;41327;41328 41368;41369 41369 2 EVVAASHELGQDYEHVTMLR LRRELDDLEQWIQEREVVAASHELGQDYEH SHELGQDYEHVTMLRDKFREFSRDTSTIGQ R E V L R D 2 1 0 1 0 1 3 1 2 0 2 0 1 0 0 1 1 0 1 3 0 0 20 0 2283.0954 O15020 O15020 1714 1733 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 3.4819E-11 95.666 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.2792 1.0625 11.736 5 Median 1.2908 1.2174 NaN 1 0 Median 1.24 1.0422 2.7296 2 0 Median 0.81591 0.88928 NaN 1 0 Median 1.2883 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29163000 14562000 14600000 7256300 3348600 3907800 4436100 1779800 2656300 17052000 9253900 7798300 417980 180010 237960 0 0 0 0 0 0 8337 1512 8663 41329;41330;41331;41332;41333 41370;41371;41372 41372 3 EVVAEVVK TWKQEYVDYSESAKKEVVAEVVKAPQVVAE YSESAKKEVVAEVVKAPQVVAEAAKTAKRK K E V V K A 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 8 0 871.50148 O60832 O60832 426 433 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0072183 67.981 By MS/MS By matching By MS/MS By MS/MS 1 1 4 1 1.021 1.0073 23.912 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.021 1.0171 NaN 1 0 Median 1.3 1.1181 NaN 1 0 Median 0.89058 0.88812 29.056 4 0 Median 1.2172 1.0073 NaN 1 0 Median 24700000 11808000 12892000 0 0 0 0 0 0 6057600 2888300 3169300 1723500 742480 980990 13796000 6896600 6899400 3123200 1280800 1842400 8338 1634 8664 41334;41335;41336;41337;41338;41339;41340 41373;41374;41375 41374 3 EVVAGAPRPGLLSLAKPLDAPAVNK LGLPPGLAKKSSSLKEVVAGAPRPGLLSLA LLSLAKPLDAPAVNKAIKSPPGFSAKGLGH K E V N K A 5 1 1 1 0 0 1 2 0 0 4 2 0 0 4 1 0 0 0 3 0 0 25 2 2482.4271 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 121 145 WIZ Protein Wiz yes no 3 0.002514 25.213 By MS/MS 1 0.41606 0.47409 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41606 0.47409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3834500 2770500 1064000 0 0 0 0 0 0 3834500 2770500 1064000 0 0 0 0 0 0 0 0 0 8339 656 8665 41341 41376 41376 1 EVVAGSHELGQDYEHVTMLQER LNREVDDLEQWIAEREVVAGSHELGQDYEH ELGQDYEHVTMLQERFREFARDTGNIGQER R E V E R F 1 1 0 1 0 2 4 2 2 0 2 0 1 0 0 1 1 0 1 3 0 0 22 0 2526.1809 Q01082 Q01082 1718 1739 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3;4 2.14E-29 162.39 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 4 1 1.1667 0.95929 19.285 15 Median 1.212 1.1247 2.2212 3 0 Plateau 1.2083 1.0095 3.469 3 0 Median 0.82654 0.90109 27.288 4 0 Median 1.0426 0.91588 22.002 4 0 Median NaN NaN NaN 0 0 Median 1.0018 0.81525 NaN 1 0 Median 301280000 149180000 152090000 69517000 30448000 39069000 26125000 11194000 14931000 198850000 104370000 94483000 5735800 2635900 3099900 0 0 0 1051700 539710 511970 8340 2681 8666;8667 41342;41343;41344;41345;41346;41347;41348;41349;41350;41351;41352;41353;41354;41355;41356 41377;41378;41379;41380;41381;41382;41383;41384;41385;41386;41387;41388;41389;41390;41391;41392;41393 41380 1367 17 EVVEAHVDQK TAEAIKALGAKHCVKEVVEAHVDQKNKVVT KHCVKEVVEAHVDQKNKVVTTPAFMCETAL K E V Q K N 1 0 0 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 0 3 0 0 10 0 1152.5775 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3 A0A096LPI6 235 244 C21orf33 yes no 2 0.0039125 55.064 By MS/MS By MS/MS 1 1 1.1579 1.0444 32.309 2 Median 0.87319 0.83106 NaN 1 0 Median 1.5356 1.3124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3262500 1615500 1647000 2238200 1141300 1096900 1024400 474230 550130 0 0 0 0 0 0 0 0 0 0 0 0 8341 144 8668 41357;41358 41394;41395 41395 2 EVVEEAENGR DTSSEITTKDLKEKKEVVEEAENGRDAPAN LKEKKEVVEEAENGRDAPANGNANEENGEQ K E V G R D 1 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 10 0 1130.5204 B8ZZQ6;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 22 31 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 2 0.00040727 76.827 By MS/MS By MS/MS 1 1 1.0131 0.9021 6.9558 2 Median 0.99206 0.94757 NaN 1 0 Median 1.0345 0.8588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31835000 15246000 16588000 29721000 13866000 15854000 2114300 1380300 733940 0 0 0 0 0 0 0 0 0 0 0 0 8342 650 8669 41359;41360 41396;41397;41398 41397 3 EVVEQGLLK LRLALKEDKFPRFWKEVVEQGLLKMQFWPA FPRFWKEVVEQGLLKMQFWPASYLCFRLLG K E V L K M 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5757 Q9BQG0;I3L1L3 Q9BQG0 287 295 MYBBP1A Myb-binding protein 1A yes no 2 0.00094316 89.296 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1.0501 1.0113 44.051 8 Median 0.51285 0.48415 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6465 1.6831 48.024 2 0 Median 1.0561 0.93298 13.83 2 0 Median 0.9698 1.0155 NaN 1 0 Median 1.0952 0.91965 12.841 2 0 Median 53339000 25452000 27888000 2087300 1390300 697000 0 0 0 26059000 12157000 13902000 5332100 2640500 2691600 14274000 7280900 6993100 5586700 1982500 3604300 8343 3789 8670 41361;41362;41363;41364;41365;41366;41367;41368 41399;41400;41401;41402;41403;41404;41405;41406;41407;41408;41409 41402 11 EVVETPLLHPER YSDVGGCKEQIEKLREVVETPLLHPERFVN KLREVVETPLLHPERFVNLGIEPPKGVLLF R E V E R F 0 1 0 0 0 0 3 0 1 0 2 0 0 0 2 0 1 0 0 2 0 0 12 0 1417.7565 P35998 P35998 189 200 PSMC2 26S protease regulatory subunit 7 yes yes 3 0.022979 34.96 By MS/MS By MS/MS 1 1 1.4765 1.349 19.909 2 Median 1.5798 1.553 NaN 1 1 Median 1.3801 1.1719 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9350000 4465200 4884800 4875800 2027300 2848500 4474200 2437900 2036300 0 0 0 0 0 0 0 0 0 0 0 0 8344 2253 8671 41369;41370 41410;41411 41411 2 EVVFVEDVK PKEEEKVNEEQWSLREVVFVEDVKNVPVGK EQWSLREVVFVEDVKNVPVGKVLKVDGAYV R E V V K N 0 0 0 1 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 4 0 0 9 0 1062.5597 O95071;E7EMW7 O95071 655 663 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0098224 48.794 By MS/MS 2 1.0679 0.929 5.75 2 Median NaN NaN NaN 0 0 Median 1.0679 0.929 5.75 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3683000 1755700 1927300 0 0 0 3683000 1755700 1927300 0 0 0 0 0 0 0 0 0 0 0 0 8345 1744 8672 41371;41372 41412 41412 1 EVVHTVSLHEIDVINSR TKFVQCPDGELQKRKEVVHTVSLHEIDVIN VHTVSLHEIDVINSRTQGFLALFSGDTGEI K E V S R T 0 1 1 1 0 0 2 0 2 2 1 0 0 0 0 2 1 0 0 4 0 0 17 0 1946.0221 Q9Y230;M0R0Y3 Q9Y230 237 253 RUVBL2 RuvB-like 2 yes no 3;4 1.0456E-08 97.579 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 2 1.0741 1.0304 7.1253 10 Median 1.0971 1.0459 NaN 1 0 Median 1.0937 0.95006 6.2499 2 0 Median 1.0515 1.0803 3.5451 3 0 Median 1.2367 1.0646 10.072 2 0 Median 0.97947 0.9818 8.6017 2 0 Median NaN NaN NaN 0 0 Median 145830000 69470000 76358000 12553000 5564200 6989300 2809800 1367700 1442100 101830000 48915000 52919000 12770000 5716700 7052800 15861000 7906700 7954700 0 0 0 8346 4368 8673 41373;41374;41375;41376;41377;41378;41379;41380;41381;41382 41413;41414;41415;41416;41417;41418;41419;41420;41421 41415 9 EVVIVSATR IRYVERSYVSKPTLKEVVIVSATRTPIGSF SKPTLKEVVIVSATRTPIGSFLGSLSLLPA K E V T R T 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 9 0 972.5604 P24752;E9PRQ6 P24752 41 49 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 0.00048255 121.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2221 1.1948 17.105 4 Median 1 1.003 NaN 1 0 Median 1.4834 1.2915 NaN 1 0 Median 1.0068 1.1054 NaN 1 0 Median 1.7537 1.4786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 139770000 65325000 74441000 44036000 21791000 22245000 34780000 14002000 20778000 51328000 26044000 25284000 9622200 3488500 6133800 0 0 0 0 0 0 8347 2126 8674 41383;41384;41385;41386 41422;41423;41424;41425;41426;41427;41428;41429 41422 8 EVVKPLLVSTLGEK IKKRKTRETVSIEVKEVVKPLLVSTLGEKS KEVVKPLLVSTLGEKSGKGLKTCKSPGRKS K E V E K S 0 0 0 0 0 0 2 1 0 0 3 2 0 0 1 1 1 0 0 3 0 0 14 1 1510.897 P51608 P51608 318 331 MECP2 Methyl-CpG-binding protein 2 yes yes 2;3 0.00089654 78.548 By MS/MS By MS/MS By matching 2 4 3 0.7711 0.86137 14.781 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77613 0.87321 18.045 2 0 Median NaN NaN NaN 0 0 Median 0.7658 0.83708 4.1102 4 0 Median 1.1771 1.0491 21.848 3 0 Median 39406000 20060000 19346000 0 0 0 0 0 0 10456000 5121900 5334500 0 0 0 26580000 13818000 12761000 2369800 1120000 1249800 8348 2437 8675 41387;41388;41389;41390;41391;41392;41393;41394;41395 41430;41431;41432;41433;41434;41435;41436 41435 7 EVVKPVPITSPAVSK APKPEPVPVQKGEPKEVVKPVPITSPAVSK EVVKPVPITSPAVSKVTSTNNMAYNKAPRP K E V S K V 1 0 0 0 0 0 1 0 0 1 0 2 0 0 3 2 1 0 0 4 0 0 15 1 1549.9079 Q96HC4;A0A0D9SFR4 Q96HC4 102 116 PDLIM5 PDZ and LIM domain protein 5 yes no 2;3 0.00035701 57.175 By matching By MS/MS By matching 1 2 1 0.71797 0.67678 6.9702 4 Median 0.62399 0.60751 NaN 1 0 Median 0.8091 0.70141 2.8155 2 0 Median 0.64991 0.66613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19376000 10526000 8850000 2871000 1928800 942190 14895000 7468900 7426600 1609200 1128000 481230 0 0 0 0 0 0 0 0 0 8349 3665 8676 41396;41397;41398;41399 41437;41438;41439 41437 3 EVVNKDVLDVYIEHR FADAVQELLPQYKEREVVNKDVLDVYIEHR EVVNKDVLDVYIEHRLMMEQRSRDPGMVRS R E V H R L 0 1 1 2 0 0 2 0 1 1 1 1 0 0 0 0 0 0 1 4 0 0 15 1 1826.9527 P33993 P33993 92 106 MCM7 DNA replication licensing factor MCM7 yes yes 3 2.4121E-05 82.102 By MS/MS 1 0.89356 0.91886 NaN 1 Median 0.89356 0.91886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22976000 12554000 10422000 22976000 12554000 10422000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8350 2225 8677 41400 41440;41441 41440 2 EVVPQDGIPPPKRPLK PPSMHVDDFVAAESKEVVPQDGIPPPKRPL VVPQDGIPPPKRPLKVSQKISSRGGFSGNR K E V L K V 0 1 0 1 0 1 1 1 0 1 1 2 0 0 5 0 0 0 0 2 0 0 16 2 1769.02 Q69YN4 Q69YN4 1664 1679 KIAA1429 Protein virilizer homolog yes yes 4 0.0269 17.425 By MS/MS 1 0.50585 0.66832 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50585 0.66832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3726600 2372800 1353800 0 0 0 0 0 0 3726600 2372800 1353800 0 0 0 0 0 0 0 0 0 8351 3130 8678 41401 41442 41442 1 EVVQNFAK GLQRAKTGTDKTLVKEVVQNFAKEFVISDR TDKTLVKEVVQNFAKEFVISDRKELEEDFI K E V A K E 1 0 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 933.49198 Q14019;H3BT58 Q14019 103 110 COTL1 Coactosin-like protein yes no 2 0.0032511 99.919 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0633 0.95022 26.769 6 Median 1.0633 0.98275 9.8988 2 0 Median 0.86693 0.73566 41.329 2 0 Median 1.1328 1.117 NaN 1 0 Median 0.90029 0.73316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64993000 34666000 30327000 28755000 13541000 15213000 32378000 19426000 12952000 2623400 1128300 1495100 1236600 570160 666420 0 0 0 0 0 0 8352 2853 8679 41402;41403;41404;41405;41406;41407 41443;41444;41445;41446;41447;41448;41449;41450 41449 8 EVVSFSPDPLPVR PGRSIKDEEEETVFREVVSFSPDPLPVRYY FREVVSFSPDPLPVRYYDKDTTKPISFYLS R E V V R Y 0 1 0 1 0 0 1 0 0 0 1 0 0 1 3 2 0 0 0 3 0 0 13 0 1440.7613 Q8NFI3;F8W925;J3QLG5 Q8NFI3 61 73 ENGASE Cytosolic endo-beta-N-acetylglucosaminidase yes no 2 0.00024031 79.974 By MS/MS By matching 2 1 0.81772 0.9061 16.135 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73292 0.79846 20.348 2 0 Median 1.0725 0.9061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5743200 3501200 2242000 0 0 0 0 0 0 5386700 3339600 2047200 356480 161620 194860 0 0 0 0 0 0 8353 3438 8680 41408;41409;41410 41451;41452 41451 2 EVVTEHLINK MVLHKHGEKLYTGLREVVTEHLINKVREDV YTGLREVVTEHLINKVREDVLNSLNNNFLQ R E V N K V 0 0 1 0 0 0 2 0 1 1 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1180.6452 Q13618;H7C1L6;A0A087X1R9 Q13618 79 88 CUL3 Cullin-3 yes no 2 0.0004139 110.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1532 1.0318 13.499 5 Linear 1.0791 1.0318 NaN 1 0 Median 1.2436 1.0877 NaN 1 0 Median 1.0689 1.1754 NaN 1 0 Median 1.0851 0.94022 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.002 0.82918 NaN 1 0 Median 17724000 8460100 9263900 3848400 1908000 1940400 4516200 1993900 2522300 3636200 1802200 1834000 4385800 2113300 2272600 0 0 0 1337300 642730 694600 8354 2831 8681 41411;41412;41413;41414;41415 41453;41454;41455;41456;41457;41458;41459;41460;41461 41460 9 EVVTEIRDK HAALQDIGKNIYTIREVVTEIRDKATRRRL NIYTIREVVTEIRDKATRRRLAVLPYELRF R E V D K A 0 1 0 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 9 1 1087.5873 H3BUR4;Q9ULX3 H3BUR4 32 40 NOB1 RNA-binding protein NOB1 yes no 2 0.034648 51.854 By matching By MS/MS 1 1 0.95468 0.89546 4.6113 2 Median 0.92758 0.92514 NaN 1 0 Median 0.98257 0.86673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1350100 698050 652010 508430 251370 257060 841630 446680 394950 0 0 0 0 0 0 0 0 0 0 0 0 8355 1238 8682 41416;41417 41462;41463 41463 2 EVVVAESELQK AHANCTLIISYQKPKEVVVAESELQKELKK QKPKEVVVAESELQKELKKVKTAHSNDGDC K E V Q K E 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 0 3 0 0 11 0 1229.6503 Q9BVM2 Q9BVM2 175 185 DPCD Protein DPCD yes yes 2 0.00016143 101.65 By MS/MS By MS/MS 1 1 1.1376 1.0082 7.9357 2 Median 1.0225 0.95315 NaN 1 0 Median 1.2657 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13101000 6686900 6413600 9368000 4770100 4598000 3732500 1916900 1815600 0 0 0 0 0 0 0 0 0 0 0 0 8356 3857 8683 41418;41419 41464;41465;41466 41466 3 EVVVSVPQR VTVYYEVAGHLRTYKEVVVSVPQRIMARHL HLRTYKEVVVSVPQRIMARHLHPIQTSFQE K E V Q R I 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 9 0 1011.5713 Q8TEM1 Q8TEM1 1548 1556 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0022552 73.26 By matching By matching By MS/MS 1 3 3 0.86532 0.87623 23.107 7 Median NaN NaN NaN 0 0 Median 0.84683 0.71879 NaN 1 0 Median 0.86532 0.87623 19.349 3 0 Plateau 1.151 1.0823 9.9053 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28612000 13881000 14732000 0 0 0 903110 390610 512500 14290000 7728800 6560900 13420000 5761400 7658200 0 0 0 0 0 0 8357 3477 8684 41420;41421;41422;41423;41424;41425;41426 41467 41467 1 EVVVYAPLSK RRLKSDVALEVPPKREVVVYAPLSKKQEIF VPPKREVVVYAPLSKKQEIFYTAIVNRTIA R E V S K K 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 3 0 0 10 0 1103.6227 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 341 350 HELLS Lymphoid-specific helicase yes no 2 0.00057839 96.331 By MS/MS By MS/MS 1 1 0.68291 0.66415 32.88 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76861 0.83799 NaN 1 0 Median 0.60676 0.52637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13950000 7589600 6360100 0 0 0 0 0 0 11863000 6351000 5511900 2086700 1238500 848200 0 0 0 0 0 0 8358 211 8685 41427;41428 41468;41469;41470;41471 41468 4 EVVVYLDDNQKPPVGEGLNR LTNLNLDDIVHIRRKEVVVYLDDNQKPPVG LDDNQKPPVGEGLNRKAEVTLDGVWPTDKT K E V N R K 0 1 2 2 0 1 2 2 0 0 2 1 0 0 2 0 0 0 1 4 0 0 20 1 2240.1437 P52948;A0A3B3ITD8 P52948 798 817 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 3 3.0343E-14 104.89 By matching By MS/MS By matching By MS/MS 1 3 2 1 0.75369 0.81975 23.175 7 Median NaN NaN NaN 0 0 Median 0.92265 0.92743 NaN 1 0 Median 0.72536 0.81975 32.737 3 0 Median 0.72601 0.6815 8.6144 2 0 Median 0.83049 0.91329 NaN 1 0 Median NaN NaN NaN 0 0 Median 73505000 41891000 31613000 0 0 0 439860 226980 212880 63693000 36539000 27154000 3285900 1873900 1412000 6086000 3251600 2834400 0 0 0 8359 2462 8686 41429;41430;41431;41432;41433;41434;41435 41472;41473;41474 41473 3 EVWALVQAGIR VLLDAFFNESSADWREVWALVQAGIRDGVV ADWREVWALVQAGIRDGVVRPLKCTVFHGA R E V I R D 2 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 1 0 2 0 0 11 0 1240.6928 P49327;A0A0U1RQF0 P49327 1809 1819 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00037796 70.919 By MS/MS By matching 1 2 1.3345 1.1649 7.9236 3 Median 1.0505 1.0279 NaN 1 0 Median 1.3668 1.1776 1.5258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20797000 8718800 12078000 3321700 1622800 1698900 17475000 7095900 10379000 0 0 0 0 0 0 0 0 0 0 0 0 8360 2377 8687 41436;41437;41438 41475;41476 41475 2 EVWFFGLQYQDTK GKQLFDQVVKTIGLREVWFFGLQYQDTKGF LREVWFFGLQYQDTKGFSTWLKLNKKVTAQ R E V T K G 0 0 0 1 0 2 1 1 0 0 1 1 0 2 0 0 1 1 1 1 0 0 13 0 1659.7933 P26038;V9GZ54 P26038 41 53 MSN Moesin yes no 2 0.031759 26.673 By MS/MS 2 0.98991 0.96258 11.706 2 Median 0.98991 0.96258 11.706 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3951600 1868700 2082900 3951600 1868700 2082900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8361 2139 8688 41439;41440 41477 41477 1 EVWNTYELDLVNYQNK AQGEMALEEFLKQIREVWNTYELDLVNYQN VWNTYELDLVNYQNKCRLIRGWDDLFNKVK R E V N K C 0 0 3 1 0 1 2 0 0 0 2 1 0 0 0 0 1 1 2 2 0 0 16 0 2026.9636 Q14204 Q14204 1468 1483 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 6.841E-11 109.6 By MS/MS By matching By matching By matching 2 3 2 1 0.97033 0.9958 9.49 8 Median 0.95705 0.95514 1.4488 2 0 Median 1.1876 1.0427 13.031 3 0 Median 0.94759 1.0475 2.7103 2 0 Median 0.97828 0.88544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26262000 12285000 13977000 21450000 10062000 11388000 2087900 869380 1218600 2611400 1304500 1306900 112870 49030 63836 0 0 0 0 0 0 8362 2865 8689 41441;41442;41443;41444;41445;41446;41447;41448 41478;41479;41480;41481 41479 4 EVWYFGLHYVDNK GKQLFDQVVKTIGLREVWYFGLHYVDNKGF LREVWYFGLHYVDNKGFPTWLKLDKKVSAQ R E V N K G 0 0 1 1 0 0 1 1 1 0 1 1 0 1 0 0 0 1 2 2 0 0 13 0 1668.7936 P15311;E7EQR4 P15311 41 53 EZR Ezrin yes no 2;3 0.00064693 68.551 By MS/MS By matching By matching By matching 2 1 2 1 1.1993 1.2202 14.112 6 Median 1.1471 1.0847 10.797 2 0 Median 1.2448 1.4184 NaN 1 0 Median 1.2338 1.3098 4.175 2 0 Median 1.1745 1.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16129000 7480900 8647800 10489000 5015400 5473400 487790 238520 249260 4783700 2057400 2726300 368510 169660 198850 0 0 0 0 0 0 8363 879 8690 41449;41450;41451;41452;41453;41454 41482;41483 41482 2 EVYALLYSDKK SSETLTFKRPEGMHREVYALLYSDKKDAPP GMHREVYALLYSDKKDAPPLLPSDTGQGYR R E V K K D 1 0 0 1 0 0 1 0 0 0 2 2 0 0 0 1 0 0 2 1 0 0 11 1 1327.7024 Q9NPF5;Q5TG40;Q5TG38;Q5TG37 Q9NPF5 56 66 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.001528 79.974 By MS/MS 1 0.61804 0.64741 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61804 0.64741 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4531500 2646300 1885200 0 0 0 0 0 0 4531500 2646300 1885200 0 0 0 0 0 0 0 0 0 8364 4050 8691 41455 41484 41484 1 EVYEEAGVK GGMEPEEEPGGAAVREVYEEAGVKGKLGRL GGAAVREVYEEAGVKGKLGRLLGVFEQNQD R E V V K G 1 0 0 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 9 0 1022.492 Q96G61;Q8NFP7 Q96G61 65 73 NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha no no 2 0.0036742 63.48 By MS/MS By MS/MS By MS/MS 2 2 1 1.0105 0.95306 24.76 5 Median 0.86333 0.8243 20.527 2 0 Median 1.3695 1.1784 26.79 2 0 Median 0.97031 0.92154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6860300 3231700 3628600 3337100 1775100 1561900 2391100 1062600 1328500 1132100 393960 738130 0 0 0 0 0 0 0 0 0 8365 3653 8692 41456;41457;41458;41459;41460 41485;41486;41487;41488;41489;41490 41487 6 EVYELLDSPGK EVLNIGKKLYEGKTKEVYELLDSPGKVLLQ GKTKEVYELLDSPGKVLLQSKDQITAGNAA K E V G K V 0 0 0 1 0 0 2 1 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1248.6238 P22234;E9PBS1 P22234 20 30 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0020633 63.283 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1539 1.2686 64.003 6 Median 1.9981 1.997 62.835 2 1 Median 1.0042 0.86038 1.4121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1298 1.2567 NaN 1 0 Median 4.646 3.7653 NaN 1 0 Median 59751000 13789000 45962000 51000000 9814500 41185000 7307300 3586800 3720500 0 0 0 0 0 0 816250 208840 607410 627590 179070 448520 8366 909 8693 41461;41462;41463;41464;41465;41466 41491;41492 41492 2 EVYLHAIVR MVMLGLKLTGRLPFREVYLHAIVRDAHGRK GRLPFREVYLHAIVRDAHGRKMSKSLGNVI R E V V R D 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1098.6186 P26640;A0A140T936;H0Y426 P26640 848 856 VARS Valine--tRNA ligase yes no 2 0.00044874 126.28 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0851 0.98121 112.66 4 Median 0.90853 0.87846 NaN 1 0 Median 0.24505 0.20957 NaN 1 0 Median 2.9506 3.2449 NaN 1 1 Median 1.296 1.096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37120000 16636000 20484000 5530500 2655700 2874800 4868300 3585500 1282900 7780100 2154400 5625600 18941000 8240400 10701000 0 0 0 0 0 0 8367 2148 8694 41467;41468;41469;41470 41493;41494;41495;41496 41496 4 EVYPEAR TWMDATLKELTSLVKEVYPEARKKGTHFNF KELTSLVKEVYPEARKKGTHFNFAIVFTDV K E V A R K 1 1 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 7 0 862.41848 O00422;H7BZW6;U3KPY7 O00422 75 81 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 0.023351 71.715 By MS/MS 1 0.84556 0.80432 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84556 0.80432 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3159200 1685200 1474000 0 0 0 0 0 0 3159200 1685200 1474000 0 0 0 0 0 0 0 0 0 8368 1253 8695 41471 41497 41497 1 EVYQPGSVLDFPR VLQPVSAELLELDIREVYQPGSVLDFPRRP IREVYQPGSVLDFPRRPPWSYEMSKEQLMS R E V P R R 0 1 0 1 0 1 1 1 0 0 1 0 0 1 2 1 0 0 1 2 0 0 13 0 1505.7514 P36915;A2AB27 P36915 119 131 GNL1 Guanine nucleotide-binding protein-like 1 yes no 2 0.024044 46.001 By MS/MS 1 1.9622 1.9194 NaN 1 Median 1.9622 1.9194 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4303600 1095700 3207900 4303600 1095700 3207900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8369 2263 8696 41472 41498 41498 1 EVYQQQQYGSGGR TVSGSKCEIKVAQPKEVYQQQQYGSGGRGN PKEVYQQQQYGSGGRGNRNRGNRGSGGGQG K E V G R G 0 1 0 0 0 4 1 3 0 0 0 0 0 0 0 1 0 0 2 1 0 0 13 0 1498.6801 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 233 245 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 1.7171E-07 168.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 5 4 1.1248 1.0145 22.446 19 Median 1.3141 1.3164 NaN 1 0 Median 1.458 1.2252 36.111 3 0 Median 1.0825 1.0758 13.682 3 0 Median 1.2956 1.0346 24.3 3 0 Median 0.93469 0.93748 11.817 5 2 Median 1.1216 0.91936 4.9018 4 0 Median 134350000 60600000 73751000 2627000 1129200 1497800 10076000 4336800 5739400 25683000 12165000 13517000 16399000 7311000 9087800 58858000 25365000 33493000 20708000 10292000 10416000 8370 805 8697 41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485;41486;41487;41488;41489;41490;41491 41499;41500;41501;41502;41503;41504;41505;41506;41507;41508;41509;41510;41511;41512;41513;41514;41515;41516;41517;41518;41519;41520;41521;41522 41504 24 EWAAQYR KVLKFACKVQKKDPKEWAAQYREAMEADLK KVQKKDPKEWAAQYREAMEADLKAAAEAAA K E W Y R E 2 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 7 0 922.42972 Q9UNF1;Q5H909;Q5H907 Q9UNF1 470 476 MAGED2 Melanoma-associated antigen D2 yes no 2 0.0076141 88.627 By MS/MS By MS/MS By matching 1 1 1 1.008 0.97911 15.476 3 Median 1.008 0.97911 NaN 1 0 Median 1.2163 1.056 NaN 1 0 Median 0.75254 0.78409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10435000 5320800 5114500 3323200 1571400 1751800 3337100 1419400 1917700 3774900 2330000 1445000 0 0 0 0 0 0 0 0 0 8371 4343 8698 41492;41493;41494 41523;41524;41525 41525 3 EWAHATIIPK AATSNLKKLVEKFGKEWAHATIIPKVLAMS EKFGKEWAHATIIPKVLAMSGDPNYLHRMT K E W P K V 2 0 0 0 0 0 1 0 1 2 0 1 0 0 1 0 1 1 0 0 0 0 10 0 1164.6291 P30153;B3KQV6;E9PH38 P30153 476 485 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0018068 80.229 By MS/MS 1 0.89678 0.84292 NaN 1 Median 0.89678 0.84292 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11179000 5093400 6085500 11179000 5093400 6085500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8372 2190 8699 41495 41526 41526 1 EWFLQAAK TFTTQETITNAETAKEWFLQAAKDPSAVAK TNAETAKEWFLQAAKDPSAVAKHFVALSTN K E W A K D 2 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 8 0 991.51272 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7ERC6 P06744 227 234 GPI Glucose-6-phosphate isomerase yes no 2 0.0060114 73.039 By MS/MS By matching By MS/MS By matching 2 1 1 2 1.0587 0.99063 7.2209 6 Median 1.0581 1.0023 1.7802 2 0 Median 1.1418 0.97861 NaN 1 0 Median 1.0361 1.0379 NaN 1 0 Median 1.0762 0.91605 11.19 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23528000 10817000 12711000 15258000 6935300 8323200 2436600 1172400 1264100 5289800 2454900 2834900 542750 254110 288630 0 0 0 0 0 0 8373 1875 8700 41496;41497;41498;41499;41500;41501 41527;41528;41529;41530 41527 4 EWGAEALTSLIK HLLEKVCQHPNSRMREWGAEALTSLIKAGL RMREWGAEALTSLIKAGLTFNHDPPLSQNQ R E W I K A 2 0 0 0 0 0 2 1 0 1 2 1 0 0 0 1 1 1 0 0 0 0 12 0 1316.6976 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 834 845 MON2 Protein MON2 homolog yes no 2 0.032347 27.329 By matching By MS/MS 1 2 1.1673 1.0308 33.083 3 Median 1.0537 1.0101 NaN 1 0 Median 1.5199 1.3656 39.783 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2799600 1257600 1542000 601860 288910 312950 2197800 968700 1229100 0 0 0 0 0 0 0 0 0 0 0 0 8374 353 8701 41502;41503;41504 41531 41531 1 EWGSGSDTLR PMTSGVKQKIMSVIREWGSGSDTLRCLALA MSVIREWGSGSDTLRCLALATHDNPLRREE R E W L R C 0 1 0 1 0 0 1 2 0 0 1 0 0 0 0 2 1 1 0 0 0 0 10 0 1106.4993 P16615;H7C5W9 P16615 550 559 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.00041321 87.476 By MS/MS By MS/MS 1 2 1.3067 1.164 18.259 3 Median 1.2 1.164 NaN 1 0 Median 1.51 1.2486 25.181 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37437000 17267000 20170000 3444400 1526400 1918000 33993000 15741000 18252000 0 0 0 0 0 0 0 0 0 0 0 0 8375 2031 8702 41505;41506;41507 41532;41533;41534;41535 41533 4 EWHHFLVVNMK LTDPDAPSRKDPKYREWHHFLVVNMKGNDI PKYREWHHFLVVNMKGNDISSGTVLSDYVG R E W M K G 0 0 1 0 0 0 1 0 2 0 1 1 1 1 0 0 0 1 0 2 0 0 11 0 1438.718 P30086 P30086 83 93 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 3 5.2791E-05 75.509 By MS/MS By matching 1 1 1.1765 1.0381 4.5451 2 Median 1.158 1.072 NaN 1 0 Median 1.1953 1.0053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30553000 14677000 15876000 25995000 12591000 13404000 4557800 2086400 2471400 0 0 0 0 0 0 0 0 0 0 0 0 8376 2188 8703 41508;41509 41536 41536 1 EWIQNTLGVNVEHK GKRYPLSGMGLPTFKEWIQNTLGVNVEHKT KEWIQNTLGVNVEHKTTSKASLNPSDTPPS K E W H K T 0 0 2 0 0 1 2 1 1 1 1 1 0 0 0 0 1 1 0 2 0 0 14 0 1665.8475 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 130 143 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3 0.00085467 39.005 By MS/MS By MS/MS By matching 1 1 1 1.0785 0.97255 28.644 3 Median 0.68721 0.65583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0785 1.1449 NaN 1 0 Median 1.1349 0.97255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10798000 5549900 5248200 5918600 3589000 2329600 0 0 0 4570900 1829000 2741900 308710 132000 176720 0 0 0 0 0 0 8377 1439 8704 41510;41511;41512 41537;41538 41538 2 EWLDKIEK WLKHQAFMAELASNKEWLDKIEKEGMQLIS AELASNKEWLDKIEKEGMQLISEKPETEAV K E W E K E 0 0 0 1 0 0 2 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 8 1 1059.5601 Q01082;A0A087WUZ3 Q01082 1328 1335 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.064356 52.716 By matching By MS/MS By matching By matching 1 1 1 1 0.95438 0.91097 29.747 4 Median NaN NaN NaN 0 0 Median 0.97342 0.82376 NaN 1 0 Median 0.82353 0.94882 NaN 1 0 Median 0.93572 0.87462 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7932 1.5789 NaN 1 0 Median 5470800 3078500 2392300 0 0 0 147110 75641 71472 3693500 2222900 1470700 1166900 619520 547370 0 0 0 463250 160440 302810 8378 2681 8705 41513;41514;41515;41516 41539 41539 1 EWLIEVPGNADPLEDQFAK WRRRWGYQRARDDTKEWLIEVPGNADPLED EVPGNADPLEDQFAKRIQAKKERVAKNELN K E W A K R 2 0 1 2 0 1 3 1 0 1 2 1 0 1 2 0 0 1 0 1 0 0 19 0 2170.0582 Q15050 Q15050 155 173 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.043623 20.663 By MS/MS 1 0.79407 0.76582 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79407 0.76582 NaN 1 0 Median NaN NaN NaN 0 0 Median 942480 552780 389700 0 0 0 0 0 0 0 0 0 0 0 0 942480 552780 389700 0 0 0 8379 2920 8706 41517 41540 41540 1 EWLIEVPGNADPLEDQFAKR WRRRWGYQRARDDTKEWLIEVPGNADPLED VPGNADPLEDQFAKRIQAKKERVAKNELNR K E W K R I 2 1 1 2 0 1 3 1 0 1 2 1 0 1 2 0 0 1 0 1 0 0 20 1 2326.1594 Q15050 Q15050 155 174 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 0.018834 14.77 By MS/MS 1 0.92588 0.9618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92588 0.9618 NaN 1 0 Median NaN NaN NaN 0 0 Median 2300800 1104900 1195900 0 0 0 0 0 0 0 0 0 0 0 0 2300800 1104900 1195900 0 0 0 8380 2920 8707 41518 41541 41541 1 EWLLAHEGHR SSGAVGNYSGGLAVKEWLLAHEGHRLGKPG GLAVKEWLLAHEGHRLGKPGLGGSSGLAGA K E W H R L 1 1 0 0 0 0 2 1 2 0 2 0 0 0 0 0 0 1 0 0 0 0 10 0 1246.6207 B4DEE8;P16455 B4DEE8 197 206 MGMT Methylated-DNA--protein-cysteine methyltransferase yes no 2;3 1.9771E-12 152.63 By MS/MS By MS/MS By matching 2 3 2 1.2614 1.0588 17.966 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9539 0.91641 20.422 2 1 Median 1.5049 1.2484 18.604 3 1 Plateau NaN NaN NaN 0 0 Median 1.4056 1.1238 9.1565 2 0 Median 38275000 19220000 19055000 0 0 0 0 0 0 28419000 15016000 13403000 7875700 3358100 4517500 0 0 0 1980700 845990 1134700 8381 589 8708 41519;41520;41521;41522;41523;41524;41525 41542;41543;41544;41545;41546 41544 5 EWLLGMLGAESAK RDFFELRLKYYGLRKEWLLGMLGAESAKLN RKEWLLGMLGAESAKLNNQARFILEKIDGK K E W A K L 2 0 0 0 0 0 2 2 0 0 3 1 1 0 0 1 0 1 0 0 0 0 13 0 1403.7119 P11388 P11388 1035 1047 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0040594 42.001 By MS/MS By MS/MS 2 1 0.94172 1.0038 20.097 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99404 1.0822 10.638 2 0 Median NaN NaN NaN 0 0 Median 0.73992 0.78366 NaN 1 0 Median NaN NaN NaN 0 0 Median 4768000 2429400 2338500 0 0 0 0 0 0 2677000 1294200 1382800 0 0 0 2091000 1135200 955770 0 0 0 8382 1963 8709 41526;41527;41528 41547;41548 41548 2 EWLSPLPDR LKETFIDSGVMSAIKEWLSPLPDRSLPALK VMSAIKEWLSPLPDRSLPALKIREELLKIL K E W D R S 0 1 0 1 0 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 0 0 9 0 1111.5662 Q96ST2;A0A1B0GW95 Q96ST2 618 626 IWS1 Protein IWS1 homolog yes no 2 0.011498 62.546 By MS/MS 1 0.79848 0.85761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79848 0.85761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3266900 1863300 1403600 0 0 0 0 0 0 3266900 1863300 1403600 0 0 0 0 0 0 0 0 0 8383 3736 8710 41529 41549 41549 1 EWLVGMLGAESTK KEFFDLRLSYYGLRKEWLVGMLGAESTKLN RKEWLVGMLGAESTKLNNQARFILEKIQGK K E W T K L 1 0 0 0 0 0 2 2 0 0 2 1 1 0 0 1 1 1 0 1 0 0 13 0 1419.7068 Q02880;E9PCY5;H7BZ82 Q02880 1056 1068 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.001603 51.092 By MS/MS By MS/MS 1 1 0.99197 1.0769 15.446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86825 0.96549 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1333 1.2012 NaN 1 0 Median NaN NaN NaN 0 0 Median 3837100 1861100 1976000 0 0 0 0 0 0 1936700 992970 943750 0 0 0 1900400 868150 1032300 0 0 0 8384 2704 8711 41530;41531 41550;41551;41552;41553 41551 4 EWNDSTSVQNPTR QDGDVIAPLITPQKKEWNDSTSVQNPTRLR KKEWNDSTSVQNPTRLREASKSRVQLFKDD K E W T R L 0 1 2 1 0 1 1 0 0 0 0 0 0 0 1 2 2 1 0 1 0 0 13 0 1532.6855 Q9Y3Z3;A0A2R8YDI8 Q9Y3Z3 597 609 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.00054524 70.942 By MS/MS 1 0.96154 0.83397 NaN 1 Median NaN NaN NaN 0 0 Median 0.96154 0.83397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2817900 1363200 1454700 0 0 0 2817900 1363200 1454700 0 0 0 0 0 0 0 0 0 0 0 0 8385 4436 8712 41532 41554 41554 1 EWQELDDAEK WGHEYVRHLAGEVAKEWQELDDAEKVQREP GEVAKEWQELDDAEKVQREPLLTLVKEIVP K E W E K V 1 0 0 2 0 1 3 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1261.5463 Q13200 Q13200 169 178 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.0026873 75.378 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8386 2796 8713 41533 41555 41555 1 EWQHEEFYR NTLQAIWMMDPKDVREWQHEEFYRYVAQAH DPKDVREWQHEEFYRYVAQAHDKPRYTLHY R E W Y R Y 0 1 0 0 0 1 3 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 9 0 1322.568 I3L0K7;I3L239;Q12931 Q12931 308 316 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 0.00019902 142.08 By MS/MS By MS/MS By matching By matching 4 4 1 1 1.2357 1.1114 14.388 10 Median 1.1292 1.0634 3.7474 4 0 Median 1.3738 1.1922 13.119 4 0 Median 1.2731 1.3443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7918 1.535 NaN 1 0 Median 165010000 68403000 96607000 84542000 38309000 46232000 75845000 28278000 47567000 3598800 1462600 2136200 0 0 0 0 0 0 1025000 353140 671870 8387 2771;1269 8714 41534;41535;41536;41537;41538;41539;41540;41541;41542;41543 41556;41557;41558;41559;41560;41561;41562;41563;41564;41565;41566;41567;41568 41563 13 EWSGLLEELAR IGGDGSLTGANLFRKEWSGLLEELARNGQI LFRKEWSGLLEELARNGQIDKEAVQKYAYL K E W A R N 1 1 0 0 0 0 3 1 0 0 3 0 0 0 0 1 0 1 0 0 0 0 11 0 1301.6616 Q01813;Q5VSR5;V9GYV7 Q01813 140 150 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0026182 52.49 By MS/MS By MS/MS 3 3 1.0703 0.95222 15.825 6 Median 1.1772 1.1189 24.162 3 0 Plateau 1.0854 0.9389 5.8921 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42553000 19670000 22883000 8894500 3772100 5122400 33659000 15898000 17761000 0 0 0 0 0 0 0 0 0 0 0 0 8388 2692 8715 41544;41545;41546;41547;41548;41549 41569;41570 41570 2 EWSQHINGASHSR PHLCSICDLPVHSNKEWSQHINGASHSRRC NKEWSQHINGASHSRRCQLLLEIYPEWNPD K E W S R R 1 1 1 0 0 1 1 1 2 1 0 0 0 0 0 3 0 1 0 0 0 0 13 0 1507.6916 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 305 317 MATR3 Matrin-3 yes no 3 0.00091613 44.457 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0698 1.1366 9.0787 5 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92704 0.98871 13.69 2 0 Median 1.1928 1.019 NaN 1 0 Median 1.0698 1.1394 NaN 1 0 Median 1.2103 1.0046 NaN 1 0 Median 4374500 2115000 2259500 0 0 0 0 0 0 1499100 696090 803000 820160 370990 449170 1725300 883890 841390 329960 164030 165930 8389 297 8716 41550;41551;41552;41553;41554 41571;41572;41573;41574;41575 41573 5 EWTDGLFTHVLR ISKDHLYGTLDPNTREWTDGLFTHVLRKII NTREWTDGLFTHVLRKIIDSVRGELQKRQW R E W L R K 0 1 0 1 0 0 1 1 1 0 2 0 0 1 0 0 2 1 0 1 0 0 12 0 1472.7412 Q14204;A0A2R8YFZ7 Q14204 2274 2285 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 2.69E-21 154.56 By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 1.0232 1.0149 49.168 10 Median 0.92155 0.91643 30.1 3 1 Median 1.2919 1.0344 12.202 3 0 Median 1.0051 1.0788 91.333 3 1 Median 1.1489 0.99572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80442000 40723000 39719000 39366000 19940000 19426000 27676000 11483000 16193000 13365000 9287300 4077200 35390 12702 22688 0 0 0 0 0 0 8390 2865 8717 41555;41556;41557;41558;41559;41560;41561;41562;41563;41564 41576;41577;41578;41579;41580;41581;41582 41578 7 EWTDGLFTHVLRK ISKDHLYGTLDPNTREWTDGLFTHVLRKII TREWTDGLFTHVLRKIIDSVRGELQKRQWI R E W R K I 0 1 0 1 0 0 1 1 1 0 2 1 0 1 0 0 2 1 0 1 0 0 13 1 1600.8362 Q14204;A0A2R8YFZ7 Q14204 2274 2286 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0026071 35.737 By MS/MS By matching By MS/MS 1 1 1 0.94668 0.9762 46.36 3 Plateau 0.94668 0.9762 NaN 1 0 Median 0.4242 0.4221 NaN 1 0 Median 0.7826 0.90446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8264500 4448600 3815900 5829000 3020900 2808100 241550 195090 46456 2194000 1232600 961350 0 0 0 0 0 0 0 0 0 8391 2865 8718 41565;41566;41567 41583;41584;41585 41584 3 EWVESMGGK QDPSVLHTEEMRFLREWVESMGGKVPPATQ EMRFLREWVESMGGKVPPATQKAKSEENTK R E W G K V 0 0 0 0 0 0 2 2 0 0 0 1 1 0 0 1 0 1 0 1 0 0 9 0 1021.4539 P50502;Q3KNR6;Q8NFI4 P50502 33 41 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 2 0.0011181 85.064 By matching By MS/MS By matching By matching 1 1 1 1 1.2722 1.1265 12.513 4 Median 1.2295 1.1373 NaN 1 0 Median 1.3164 1.1158 NaN 1 0 Median 1.0015 1.0884 NaN 1 0 Median 1.5905 1.4266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35705000 14780000 20925000 15576000 6046600 9529100 11161000 4628100 6533000 2708000 1517800 1190300 6259800 2587000 3672800 0 0 0 0 0 0 8392 2415 8719 41568;41569;41570;41571 41586 41586 1 EWVNLYHSAAAGR DDPPGLREKAEYLLREWVNLYHSAAAGRDS LREWVNLYHSAAAGRDSTKAFSAFVGQMHQ R E W G R D 3 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 0 1 1 1 0 0 13 0 1472.7161 A5YKK6;H3BMZ2 A5YKK6 1858 1870 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 3.8838E-07 109.42 By MS/MS 1 1.0277 0.96527 NaN 1 Median 1.0277 0.96527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9983200 4771800 5211400 9983200 4771800 5211400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8393 503 8720 41572 41587 41587 1 EWVSMAGPR ESIENLEDLKGHSVREWVSMAGPRLEIHHR KGHSVREWVSMAGPRLEIHHRFKNFLRTHV R E W P R L 1 1 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 0 1 0 0 9 0 1031.4859 P49736;H0Y8E6 P49736 184 192 MCM2 DNA replication licensing factor MCM2 yes no 2 0.010073 55.531 By MS/MS By matching 2 2 1.005 0.84645 12.552 4 Linear NaN NaN NaN 0 0 Median 0.90149 0.75687 15.388 2 0 Median 0.80956 0.87656 4.5113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25488000 13103000 12385000 0 0 0 16731000 8539000 8191500 8757900 4564400 4193400 0 0 0 0 0 0 0 0 0 8394 2393 8721;8722 41573;41574;41575;41576 41588;41589;41590 41590 1104 3 EWYMIISR VFEGEEGQDAGGLLREWYMIISREMFNPMY DAGGLLREWYMIISREMFNPMYALFRTSPG R E W S R E 0 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 1 1 0 0 0 8 0 1096.5376 Q7Z6Z7;H0Y659 Q7Z6Z7 4064 4071 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0069279 69.198 By MS/MS 1 1.1583 1.1678 NaN 1 Median 1.1583 1.1678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3628700 1693100 1935600 3628700 1693100 1935600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8395 3253 8723 41577 41591;41592 41592 2 EWYPSLATMQESLR WPSPEQLRELEAEEREWYPSLATMQESLRV REWYPSLATMQESLRVKQLAEEQKRREREQ R E W L R V 1 1 0 0 0 1 2 0 0 0 2 0 1 0 1 2 1 1 1 0 0 0 14 0 1709.8083 Q8TAE8 Q8TAE8 91 104 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 0.044586 24.792 By MS/MS 1 0.97577 0.91669 NaN 1 Median 0.97577 0.91669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 988050 462870 525180 988050 462870 525180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8396 3452 8724 41578 41593 41593 1 EWYQETHEK MQVTLIPTHDSEVMREWYQETHEKQQDLNI DSEVMREWYQETHEKQQDLNIMVLASSSTV R E W E K Q 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 9 0 1248.5411 P46821 P46821 2431 2439 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 0.0024046 72.23 By matching By MS/MS 2 2 1.8419 1.541 31.778 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83979 0.8227 35.449 2 0 Median 1.4816 1.252 3.0892 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5955800 2599200 3356700 0 0 0 0 0 0 1466900 850070 616830 4488900 1749100 2739800 0 0 0 0 0 0 8397 2347 8725 41579;41580;41581;41582 41594;41595;41596 41596 3 EYAEDDNIYQQK NPLVSERLELSVLYKEYAEDDNIYQQKIKD LYKEYAEDDNIYQQKIKDLHKKYSYIRKTR K E Y Q K I 1 0 1 2 0 2 2 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 12 0 1514.6525 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 60 71 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2 0.00010393 131.5 By MS/MS By MS/MS 1 1 0.46982 0.4098 117.14 2 Median 0.19756 0.17899 NaN 1 1 Median 1.1172 0.93824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67169000 52716000 14452000 52995000 47363000 5631600 14174000 5353400 8820800 0 0 0 0 0 0 0 0 0 0 0 0 8398 1322 8726 41583;41584 41597;41598;41599 41599 3 EYAENIGDGR NMRGSSIKIVRHIIKEYAENIGDGRSPEFR RHIIKEYAENIGDGRSPEFRENEQKRILGL K E Y G R S 1 1 1 1 0 0 2 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1122.4942 Q8WYA6;A0A087WUB9 Q8WYA6 535 544 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.00033784 92.838 By MS/MS By MS/MS By MS/MS 1 1 1 1.0958 0.91721 12.798 3 Median NaN NaN NaN 0 0 Median 1.3008 1.1282 NaN 1 0 Median 0.87638 0.89293 NaN 1 0 Median 1.0958 0.91721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15645000 7944900 7700200 0 0 0 3898200 1779600 2118600 10865000 5672400 5192900 881650 492950 388710 0 0 0 0 0 0 8399 28 8727 41585;41586;41587 41600;41601;41602;41603 41602 4 EYAGYLLYSER ACAHGMLAEDGASCREYAGYLLYSERTILK ASCREYAGYLLYSERTILKSIHLSDERNLN R E Y E R T 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 1 0 0 3 0 0 0 11 0 1362.6456 Q07954 Q07954 2196 2206 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 0.00016408 91.087 By MS/MS By matching 2 1 0.99571 0.97356 71.085 3 Median 0.70873 0.7024 46.167 2 0 Median 2.3311 2.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15476000 6959400 8516400 14468000 6612000 7856300 1007600 347420 660140 0 0 0 0 0 0 0 0 0 0 0 0 8400 2733 8728 41588;41589;41590 41604;41605 41604 2 EYAQVFR VLIEAAKNGNEKEVKEYAQVFREHANKLIE NGNEKEVKEYAQVFREHANKLIEVANLACS K E Y F R E 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 7 0 911.45012 P35221;G3XAM7;E5RGD2;B9A010;E5RFM5;E5RFK9;E5RFG3;E5RHJ5;E5RGU3;A0A087WZL6;E5RJP7;P26232;A0A0A0MTJ6;A0A0A0MRI5 P35221 418 424 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 no no 2 0.023603 56.51 By MS/MS 3 1.1514 1.0137 95.244 3 Median NaN NaN NaN 0 0 Median 1.1514 1.0137 95.244 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4072700 1727800 2344900 0 0 0 4072700 1727800 2344900 0 0 0 0 0 0 0 0 0 0 0 0 8401 2232;2141 8729 41591;41592;41593 41606;41607 41606 2 EYAVNEVVAGIK DYANYKKSRGNTDNKEYAVNEVVAGIKEYF DNKEYAVNEVVAGIKEYFNVMLGTQLLYKF K E Y I K E 2 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 1 3 0 0 12 0 1290.682 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21;Q15014;A0A0A0MT59 B3KTM8 236 247 MORF4L1;MORF4L2 Mortality factor 4-like protein 1;Mortality factor 4-like protein 2 no no 2 0.00030237 82.645 By matching By MS/MS By matching 1 2 3 1.1352 0.99727 8.6261 6 Median NaN NaN NaN 0 0 Median 1.2866 1.0757 NaN 1 0 Median 0.99073 0.98748 3.9811 2 0 Median 1.1877 0.9792 12.396 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47205000 22809000 24396000 0 0 0 458720 196760 261970 40380000 19728000 20652000 6365900 2884300 3481600 0 0 0 0 0 0 8402 585;2912 8730 41594;41595;41596;41597;41598;41599 41608;41609;41610 41610 3 EYDELAETQGK FLVKSKHRDLTALCKEYDELAETQGKLEEK ALCKEYDELAETQGKLEEKLQELEANPPSD K E Y G K L 1 0 0 1 0 1 3 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 11 0 1281.5725 O60341;R4GMQ1 O60341 493 503 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.00015157 91.087 By MS/MS By MS/MS By MS/MS 1 1 1 1.2845 1.101 5.4851 3 Median NaN NaN NaN 0 0 Median 1.3146 1.1386 NaN 1 0 Median 0.93311 1.0228 NaN 1 0 Median 1.2845 1.101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13982000 6385900 7595800 0 0 0 3341800 1276700 2065100 7553200 3746900 3806300 3086700 1362300 1724400 0 0 0 0 0 0 8403 1613 8731 41600;41601;41602 41611;41612;41613;41614 41612 4 EYDLIVHQLATYPDVNNSIK FLKVTIVRRLTDLVKEYDLIVHQLATYPDV VHQLATYPDVNNSIKMEVGIEDCLHIEFEY K E Y I K M 1 0 2 2 0 1 1 0 1 2 2 1 0 0 1 1 1 0 2 2 0 0 20 0 2331.1747 O75436;S4R3Q6 O75436 146 165 VPS26A Vacuolar protein sorting-associated protein 26A yes no 3 0.00033382 32.156 By MS/MS By MS/MS By matching 1 1 1 0.82823 0.7739 13.743 3 Median 0.82823 0.7739 NaN 1 0 Median 0.82571 0.71061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0892 0.92989 NaN 1 0 Median 6378800 3285700 3093000 3874400 1806500 2067900 1740300 891940 848390 0 0 0 0 0 0 0 0 0 764060 587310 176760 8404 1671 8732 41603;41604;41605 41615;41616;41617 41617 3 EYDQALADLKK TKALYRRAQGWQGLKEYDQALADLKKAQGI QGLKEYDQALADLKKAQGIAPEDKAIQAEL K E Y K K A 2 0 0 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1292.6612 Q08752;H0Y8J0 Q08752 322 332 PPID Peptidyl-prolyl cis-trans isomerase D yes no 2 0.049851 43.512 By MS/MS 1 1.1214 1.222 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1214 1.222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3884300 1258900 2625400 0 0 0 0 0 0 3884300 1258900 2625400 0 0 0 0 0 0 0 0 0 8405 2742 8733 41606 41618 41618 1 EYEAALNSK AKKESDLNGAQIKLREYEAALNSKDAALAT AQIKLREYEAALNSKDAALATALGDKKSLE R E Y S K D 2 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1023.4873 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 137 145 LMNB1 Lamin-B1 yes no 2 0.0035377 64.42 By MS/MS By MS/MS By MS/MS 1 3 4 1.2523 1.0366 32.786 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96804 1.022 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97914 1.0125 56.452 3 0 Median 1.3801 1.1419 17.621 4 2 Median 22183000 10421000 11762000 0 0 0 0 0 0 4992700 2625700 2367000 0 0 0 10981000 5231300 5749600 6209400 2563700 3645700 8406 2084 8734 41607;41608;41609;41610;41611;41612;41613;41614 41619;41620;41621;41622;41623;41624 41624 6 EYEATLEECCAK RHPEYAVSVLLRLAKEYEATLEECCAKDDP LAKEYEATLEECCAKDDPHACYSTVFDKLK K E Y A K D 2 0 0 0 2 0 4 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1501.6065 CON__P02769 CON__P02769 375 386 yes yes 2 0.00066824 91.584 By MS/MS 1 0.044711 0.038458 NaN 1 Median NaN NaN NaN 0 0 Median 0.044711 0.038458 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3081200 2940000 141280 0 0 0 3081200 2940000 141280 0 0 0 0 0 0 0 0 0 0 0 0 + 8407 746 8735 41615 41625 41625 1 EYEDNDEVHIEVHNPR GEQNEMARLKAALIREYEDNDEVHIEVHNP YEDNDEVHIEVHNPRNTEAVTLNFRGEKLA R E Y P R N 0 1 2 2 0 0 4 0 2 1 0 0 0 0 1 0 0 0 1 2 0 0 16 0 1993.8766 Q9UKF6;G5E9W3 Q9UKF6 434 449 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 4 0.00014614 45.33 By matching By matching By MS/MS 1 1 1 0.73003 0.76004 5.2655 3 Median 0.71046 0.7093 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73003 0.76004 NaN 1 0 Median 0.91276 0.78654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9116500 5454100 3662300 638800 376620 262180 0 0 0 5693000 3579600 2113400 2784600 1497900 1286700 0 0 0 0 0 0 8408 4309 8736 41616;41617;41618 41626 41626 1 EYEIPSNLTPADVFFR SDLVNTAILIALNKREYEIPSNLTPADVFF YEIPSNLTPADVFFREVSQVDTICECLLEH R E Y F R E 1 1 1 1 0 0 2 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 16 0 1896.9258 Q8WUM0 Q8WUM0 676 691 NUP133 Nuclear pore complex protein Nup133 yes yes 2 1.6525E-09 121.02 By MS/MS By MS/MS By MS/MS 1 2 2 0.73059 0.80326 18.048 5 Median 0.61728 0.61654 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.62318 0.70945 17.562 2 0 Median NaN NaN NaN 0 0 Median 0.85946 0.88516 0.88511 2 0 Median NaN NaN NaN 0 0 Median 18778000 10355000 8422800 1494100 835440 658610 0 0 0 14824000 8199900 6624100 0 0 0 2460200 1320100 1140100 0 0 0 8409 3492 8737 41619;41620;41621;41622;41623 41627;41628;41629;41630;41631;41632 41630 6 EYEKEAEREEER ERLKNWEIRERKKTREYEKEAEREEERRRE KTREYEKEAEREEERRREMAKEAKRLKEFL R E Y E R R 1 2 0 0 0 0 7 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 12 2 1595.7063 P49756 P49756 474 485 RBM25 RNA-binding protein 25 yes yes 3 0.07061 13.2 By MS/MS 1 0.92787 1.046 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92787 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 543580 258520 285060 0 0 0 0 0 0 543580 258520 285060 0 0 0 0 0 0 0 0 0 8410 2397 8738 41624 41633 41633 1 EYELLSDELNQK VNYDQKSQEVEDKTKEYELLSDELNQKSAT KTKEYELLSDELNQKSATLASIDAELQKLK K E Y Q K S 0 0 1 1 0 1 3 0 0 0 3 1 0 0 0 1 0 0 1 0 0 0 12 0 1479.7093 P33176 P33176 515 526 KIF5B Kinesin-1 heavy chain yes yes 2 0.001773 79.974 By MS/MS 1 0.73034 0.70815 NaN 1 Median 0.73034 0.70815 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8460700 5067600 3393100 8460700 5067600 3393100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8411 2221 8739 41625 41634 41634 1 EYETVMK EDRSRDYMNARRVAKEYETVMKGLDRNAPS MNARRVAKEYETVMKGLDRNAPSVPPQNTP K E Y M K G 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 1 0 1 1 0 0 7 0 898.41062 Q12996;E9PLP8 Q12996 222 228 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.026776 52.683 By matching By MS/MS By matching 1 1 1 1.2188 1.1004 7.9419 3 Median NaN NaN NaN 0 0 Median 1.2188 1.1004 NaN 1 0 Median 1.0437 1.0854 NaN 1 0 Median 1.4385 1.2534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7583300 3755000 3828300 0 0 0 667920 272290 395630 6360800 3238900 3121900 554520 243760 310760 0 0 0 0 0 0 8412 2777 8740 41626;41627;41628 41635 41635 1 EYFADMK KYYKGLGTSTSKEAKEYFADMKRHRIQFKY TSTSKEAKEYFADMKRHRIQFKYSGPEDDA K E Y M K R 1 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 7 0 902.3844 P11388 P11388 626 632 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.073743 34.824 By matching By MS/MS By matching 1 1 1 1.3051 1.3976 1.8223 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2695 1.415 NaN 1 0 Median 1.5027 1.3655 NaN 1 0 Median 1.3051 1.3805 NaN 1 0 Median NaN NaN NaN 0 0 Median 5474000 2265600 3208400 0 0 0 0 0 0 2455600 1107300 1348300 736610 314410 422200 2281800 843870 1438000 0 0 0 8413 1963 8741 41629;41630;41631 41636 41636 1 EYFADMKR KYYKGLGTSTSKEAKEYFADMKRHRIQFKY STSKEAKEYFADMKRHRIQFKYSGPEDDAA K E Y K R H 1 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 8 1 1058.4855 P11388 P11388 626 633 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0050074 91.041 By MS/MS 1 1.3572 1.5374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3572 1.5374 NaN 1 0 Median NaN NaN NaN 0 0 Median 6698900 2815200 3883600 0 0 0 0 0 0 0 0 0 0 0 0 6698900 2815200 3883600 0 0 0 8414 1963 8742 41632 41637 41637 1 EYFGEFGEIEAIELPMDPK FVGGLNPEATEEKIREYFGEFGEIEAIELP EFGEIEAIELPMDPKLNKRRGFVFITFKEE R E Y P K L 1 0 0 1 0 0 5 2 0 2 1 1 1 2 2 0 0 0 1 0 0 0 19 0 2213.0238 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 172 190 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 5.9268E-06 50.675 By MS/MS By MS/MS By matching 1 2 2 0.71336 0.68841 4.1026 5 Median NaN NaN NaN 0 0 Median 0.75677 0.64636 NaN 1 0 Median 0.69394 0.69702 1.3725 2 0 Median NaN NaN NaN 0 0 Median 0.68231 0.66578 4.7266 2 0 Median NaN NaN NaN 0 0 Median 11200000 6393900 4805700 0 0 0 984450 552670 431780 8511500 4868900 3642600 0 0 0 1703700 972280 731390 0 0 0 8415 805 8743 41633;41634;41635;41636;41637 41638;41639 41639 2 EYFGGFGEVESIELPMDNK FVGGLSPDTPEEKIREYFGGFGEVESIELP GFGEVESIELPMDNKTNKRRGFCFITFKEE R E Y N K T 0 0 1 1 0 0 4 3 0 1 1 1 1 2 1 1 0 0 1 1 0 0 19 0 2159.9721 Q14103;H0Y8G5;H0YA96;D6RAF8 Q14103 200 218 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2;3 5.1398E-18 111.39 By MS/MS By MS/MS By MS/MS 1 4 3 0.83657 0.80518 7.769 8 Median NaN NaN NaN 0 0 Median 0.99081 0.84793 NaN 1 0 Median 0.84802 0.84363 10.371 4 0 Median NaN NaN NaN 0 0 Median 0.81845 0.77969 3.3913 3 0 Median NaN NaN NaN 0 0 Median 140680000 73845000 66839000 0 0 0 5199700 2527500 2672200 126150000 66184000 59968000 0 0 0 9333000 5134200 4198800 0 0 0 8416 2854 8744 41638;41639;41640;41641;41642;41643;41644;41645 41640;41641;41642;41643;41644;41645;41646;41647;41648;41649;41650;41651;41652 41645 13 EYFSWEGAFQHVGK RKLDPGSEETQTLVREYFSWEGAFQHVGKA REYFSWEGAFQHVGKAFNQGKIFK______ R E Y G K A 1 0 0 0 0 1 2 2 1 0 0 1 0 2 0 1 0 1 1 1 0 0 14 0 1683.7682 P26641 P26641 415 428 EEF1G Elongation factor 1-gamma yes yes 2;3 9.8679E-07 97.597 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 4 7 9 3 5 1.2778 1.1003 18.809 32 Median 1.2792 1.1798 24.22 4 0 Median 1.1705 1.0108 12.077 4 0 Median 1.4696 1.4402 21.548 7 0 Median 1.2001 1.0599 6.6996 9 0 Median 1.3177 1.2575 12.055 3 1 Median 1.2773 1.0739 10.209 5 0 Median 573090000 245180000 327910000 54706000 23556000 31151000 8852400 4369900 4482500 298920000 125190000 173740000 191050000 83722000 107330000 16646000 6996600 9649400 2904800 1348100 1556600 8417 2149 8745 41646;41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660;41661;41662;41663;41664;41665;41666;41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677 41653;41654;41655;41656;41657;41658;41659;41660;41661;41662;41663;41664;41665;41666;41667;41668;41669 41663 17 EYFYGFR RSKDFRRECRDERIREYFYGFRGCFYPHAF ECRDERIREYFYGFRGCFYPHAFNVKFSDV R E Y F R G 0 1 0 0 0 0 1 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 7 0 980.43922 E9PL17;Q92989 E9PL17 314 320 CLP1 Polyribonucleotide 5-hydroxyl-kinase Clp1 yes no 2 0.027151 52.231 By MS/MS 1 0.77417 0.84176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77417 0.84176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2385000 1366300 1018700 0 0 0 0 0 0 2385000 1366300 1018700 0 0 0 0 0 0 0 0 0 8418 954 8746 41678 41670 41670 1 EYGEQIDPSTHR AHLTELLEEICDRMKEYGEQIDPSTHRKNY RMKEYGEQIDPSTHRKNYVRVVGRNGESSE K E Y H R K 0 1 0 1 0 1 2 1 1 1 0 0 0 0 1 1 1 0 1 0 0 0 12 0 1430.6426 F8W031;F8VXJ7;Q9Y2B0;F8W1K5 F8W031 91 102 CNPY2 Protein canopy homolog 2 yes no 3 0.031143 20.463 By matching By MS/MS 1 1 1.1535 1.0455 7.7562 2 Median 1.1222 1.1044 NaN 1 0 Median 1.1857 0.9897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1033200 515230 518020 296330 154170 142160 736920 361060 375860 0 0 0 0 0 0 0 0 0 0 0 0 8419 1078 8747 41679;41680 41671;41672 41671 2 EYGGLDVLVNNAGIAFK DDLQSIRALRDFLRKEYGGLDVLVNNAGIA GGLDVLVNNAGIAFKVADPTPFHIQAEVTM K E Y F K V 2 0 2 1 0 0 1 3 0 1 2 1 0 1 0 0 0 0 1 2 0 0 17 0 1778.9203 P16152;E9PQ63;A8MTM1 P16152 80 96 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 2.5022E-05 58.676 By MS/MS 2 1.2356 1.0375 6.3828 2 Median NaN NaN NaN 0 0 Median 1.2356 1.0375 6.3828 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10157000 4404900 5752400 0 0 0 10157000 4404900 5752400 0 0 0 0 0 0 0 0 0 0 0 0 8420 2025 8748 41681;41682 41673 41673 1 EYGMIYLGK KEVCFTIENKTPQGREYGMIYLGKDTNGEN KTPQGREYGMIYLGKDTNGENIAESLVAEG R E Y G K D 0 0 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 2 0 0 0 9 0 1072.5263 Q7KZF4 Q7KZF4 108 116 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.014496 44.447 By MS/MS By MS/MS 1 1 1.2089 1.2479 12.789 2 Median 1.1781 1.14 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2404 1.366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17148000 8567000 8580900 11500000 5922800 5577200 0 0 0 5647900 2644200 3003700 0 0 0 0 0 0 0 0 0 8421 3214 8749 41683;41684 41674;41675;41676 41674 3 EYHPDKNPNAGDKFK ASENELKKAYRKLAKEYHPDKNPNAGDKFK EYHPDKNPNAGDKFKEISFAYEVLSNPEKR K E Y F K E 1 0 2 2 0 0 1 1 1 0 0 3 0 1 2 0 0 0 1 0 0 0 15 2 1758.8325 O60884 O60884 34 48 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 3 0.034626 17.252 By MS/MS By matching 1 1 0.75504 0.79563 17.654 2 Median NaN NaN NaN 0 0 Median 0.74183 0.70226 NaN 1 0 Median 0.76849 0.90141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1291300 721030 570270 0 0 0 780690 436960 343730 510610 284070 226540 0 0 0 0 0 0 0 0 0 8422 1637 8750 41685;41686 41677 41677 1 EYHVQFFSNQPER PQLEVHTKINTRGAREYHVQFFSNQPERAW AREYHVQFFSNQPERAWVHEKRVREYKGHK R E Y E R A 0 1 1 0 0 2 2 0 1 0 0 0 0 2 1 1 0 0 1 1 0 0 13 0 1679.7692 Q9BZ95 Q9BZ95 307 319 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes yes 3 7.7645E-05 78.324 By MS/MS By matching 2 2 0.94674 0.93116 16.344 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85985 0.93802 20.108 2 0 Median 1.0596 0.92581 19.884 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6212400 3759700 2452700 0 0 0 0 0 0 5375800 3377000 1998800 836580 382760 453820 0 0 0 0 0 0 8423 3896 8751 41687;41688;41689;41690 41678 41678 1 EYINECDSDYHEER RQEAVRMVRVLTVLREYINECDSDYHEERT REYINECDSDYHEERTILPMSRAFRGKHLS R E Y E R T 0 1 1 2 1 0 4 0 1 1 0 0 0 0 0 1 0 0 2 0 0 0 14 0 1857.7112 Q93008 Q93008 859 872 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 0.00066221 89.46 By MS/MS 1 1.0829 0.87885 NaN 1 Median NaN NaN NaN 0 0 Median 1.0829 0.87885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10686000 5375500 5310600 0 0 0 10686000 5375500 5310600 0 0 0 0 0 0 0 0 0 0 0 0 8424 3573 8752 41691 41679 41679 0 EYIPGQPPLSQSSDSSPTR CLLSLKAQYKEKTGKEYIPGQPPLSQSSDS GQPPLSQSSDSSPTRNSEPAGLETPEAKVL K E Y T R N 0 1 0 1 0 2 1 1 0 1 1 0 0 0 4 5 1 0 1 0 0 0 19 0 2044.9702 P07814;V9GYZ6 P07814 871 889 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 3.669E-13 105 By MS/MS By MS/MS By matching 1 2 1 0.66086 0.57239 14.369 4 Median 0.52126 0.48923 NaN 1 0 Median 0.73617 0.63987 10.67 2 0 Median NaN NaN NaN 0 0 Median 0.62827 0.55216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20710000 13197000 7512700 14495000 9569000 4926100 4868200 2772700 2095500 0 0 0 1346300 855210 491110 0 0 0 0 0 0 8425 1892 8753 41692;41693;41694;41695 41680;41681;41682;41683 41680 4 EYIPTVFDNYSAQSAVDGR KTCLLICYTTNAFPKEYIPTVFDNYSAQSA TVFDNYSAQSAVDGRTVNLNLWDTAGQEEY K E Y G R T 2 1 1 2 0 1 1 1 0 1 0 0 0 1 1 2 1 0 2 2 0 0 19 0 2130.9858 P84095 P84095 31 49 RHOG Rho-related GTP-binding protein RhoG yes yes 2 1.1281E-07 68.034 By MS/MS By MS/MS By matching 1 1 1 0.94553 0.83376 8.0839 3 Median 0.84058 0.8318 NaN 1 0 Median 1.0046 0.83376 NaN 1 0 Median 0.94553 0.95793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9550300 4952300 4598000 5043800 2488300 2555500 2454500 1260400 1194100 2052000 1203700 848320 0 0 0 0 0 0 0 0 0 8426 2667 8754 41696;41697;41698 41684;41685;41686;41687 41687 4 EYIQILER WGHLKELDSQLNEPREYIQILERRRAFSRW SQLNEPREYIQILERRRAFSRWLSCTATPQ R E Y E R R 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1062.571 P52948;A0A3B3ITD8;H7C3P6 P52948 1295 1302 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0035902 86.953 By MS/MS By MS/MS By MS/MS 1 1 1 1.0609 1.1227 4.4148 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0609 1.1227 NaN 1 0 Median 1.3516 1.1493 NaN 1 0 Median 0.99303 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median 29394000 13739000 15655000 0 0 0 0 0 0 24004000 11324000 12679000 3288900 1334300 1954600 2101000 1079900 1021100 0 0 0 8427 2462 8755 41699;41700;41701 41688;41689;41690;41691 41688 4 EYLDNVQLGHILER REDQKRKGISDLVLKEYLDNVQLGHILERE KEYLDNVQLGHILEREGGWDSVQDWMDVLS K E Y E R E 0 1 1 1 0 1 2 1 1 1 3 0 0 0 0 0 0 0 1 1 0 0 14 0 1697.8737 P28288 P28288 544 557 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 0.0015547 37.156 By MS/MS 1 0.81464 0.81144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81464 0.81144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16675000 7183100 9491700 0 0 0 0 0 0 16675000 7183100 9491700 0 0 0 0 0 0 0 0 0 8428 2163 8756 41702 41692 41692 1 EYLDYDDTR LSPEEDQSLLLSQFREYLDYDDTRYHTMQA LLSQFREYLDYDDTRYHTMQAAVDAVARVT R E Y T R Y 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 2 0 0 0 9 0 1188.4935 Q9BVI4;F5H303 Q9BVI4 173 181 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.0053299 57.96 By MS/MS By matching 1 1 1.2756 1.2171 2.068 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1402 1.1994 NaN 1 0 Median 1.4271 1.235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898300 1246700 1651600 0 0 0 0 0 0 2086400 968220 1118200 811860 278440 533420 0 0 0 0 0 0 8429 3854 8757 41703;41704 41693;41694 41693 2 EYLGANWTLEK QTSVATLDETEELPREYLGANWTLEKVFEE ELPREYLGANWTLEKVFEELQATDKKRVLE R E Y E K V 1 0 1 0 0 0 2 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 11 0 1322.6507 P57740;H0YG15 P57740 481 491 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.00014645 88.496 By MS/MS By matching By matching 1 2 1 1.371 1.2171 7.3242 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0898 1.1817 NaN 1 0 Median 1.371 1.1836 8.1113 2 0 Median NaN NaN NaN 0 0 Median 1.5858 1.324 NaN 1 0 Median 21928000 9706900 12221000 0 0 0 0 0 0 19491000 8703600 10787000 1870000 773270 1096700 0 0 0 567500 230030 337460 8430 2518 8758 41705;41706;41707;41708 41695;41696 41696 2 EYLLDMIPPR SLAVHKSSSAVDRQREYLLDMIPPRSIPQS VDRQREYLLDMIPPRSIPQSATWK______ R E Y P R S 0 1 0 1 0 0 1 0 0 1 2 0 1 0 2 0 0 0 1 0 0 0 10 0 1245.6427 A0A0U1RRM1;Q8WXI9;Q86YP4 Q86YP4 615 624 GATAD2B;GATAD2A Transcriptional repressor p66-beta;Transcriptional repressor p66-alpha no no 2 0.0018916 62.2 By MS/MS By matching By MS/MS 1 1 1 0.82068 0.87701 6.4774 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74408 0.78584 NaN 1 0 Median 1.0458 0.88114 NaN 1 0 Median 0.82068 0.87701 NaN 1 0 Median NaN NaN NaN 0 0 Median 5006000 2573300 2432700 0 0 0 0 0 0 3572100 1860700 1711300 144730 81007 63726 1289200 631590 657650 0 0 0 8431 3309;311 8759 41709;41710;41711 41697;41698;41699 41698 3 EYLLGSTAEEK GLTTIAAHLVKQANKEYLLGSTAEEKAIVQ QANKEYLLGSTAEEKAIVQQWLEYRVTQVD K E Y E K A 1 0 0 0 0 0 3 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 11 0 1238.603 O43324;D6RBD7;C9J1V9;H0YAL7;D6RCQ0 O43324 58 68 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.00013836 102.06 By MS/MS By MS/MS 2 1 1.0059 0.95032 5.6972 3 Median 0.95873 0.9057 6.802 2 2 Median 1.1126 0.95489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24416000 12638000 11778000 19550000 10412000 9137900 4866000 2225800 2640200 0 0 0 0 0 0 0 0 0 0 0 0 8432 1566 8760 41712;41713;41714 41700;41701;41702;41703 41703 4 EYLLQYNDPNRR RAQAERLAIRAQLKREYLLQYNDPNRRGLI LKREYLLQYNDPNRRGLIENPALLRWAYAR R E Y R R G 0 2 2 1 0 1 1 0 0 0 2 0 0 0 1 0 0 0 2 0 0 0 12 1 1579.7743 O95168;F2Z3P9;C9JXQ9 O95168 46 57 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 2;3 0.00023287 85.288 By MS/MS By MS/MS By MS/MS 3 3 2 0.75054 0.75014 35.206 8 Median 0.74695 0.74525 2.8872 3 0 Median 1.5323 1.3064 10.696 3 1 Median 0.51109 0.55504 11.185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56444000 27626000 28819000 20394000 10828000 9565700 27105000 10924000 16181000 8945600 5873600 3072000 0 0 0 0 0 0 0 0 0 8433 1751 8761 41715;41716;41717;41718;41719;41720;41721;41722 41704;41705;41706;41707;41708;41709;41710;41711 41711 8 EYLNPLHYTGPPTER LTGHWVDEVGKFCSREYLNPLHYTGPPTER EYLNPLHYTGPPTERIRLQHQVKRHNLIVA R E Y E R I 0 1 1 0 0 0 2 1 1 0 2 0 0 0 3 0 2 0 2 0 0 0 15 0 1785.8686 A0A0A0MTH9;O14981 A0A0A0MTH9 1352 1366 BTAF1 TATA-binding protein-associated factor 172 yes no 3 0.018592 34.612 By MS/MS By matching 1 1 0.65629 0.64543 17.203 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51715 0.5715 NaN 1 0 Median 0.83288 0.72891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4567400 2776900 1790500 0 0 0 0 0 0 4179500 2562900 1616500 387950 213940 174000 0 0 0 0 0 0 8434 191 8762 41723;41724 41712 41712 0 EYLPEGDFSIMTEMLKK GCLCQESPINVTTVREYLPEGDFSIMTEML LPEGDFSIMTEMLKKFLSFMNLTCAVGTTG R E Y K K F 0 0 0 1 0 0 3 1 0 1 2 2 2 1 1 1 1 0 1 0 0 0 17 1 2029.9741 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 1145 1161 WAPAL Wings apart-like protein homolog yes no 3 0.066234 6.1222 By MS/MS 1 0.76784 0.87573 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76784 0.87573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 934380 574210 360180 0 0 0 0 0 0 934380 574210 360180 0 0 0 0 0 0 0 0 0 8435 3249 8763 41725 41713;41714 41714 2 EYLQQLR KDLFIWDLDLPSRRREYLQQLRKDVVETTR LDLPSRRREYLQQLRKDVVETTRSPESVSR R E Y L R K 0 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 948.50288 Q9P2P6 Q9P2P6 4307 4313 STARD9 StAR-related lipid transfer protein 9 yes yes 2 0.018719 80.377 By MS/MS 1 1.856 1.5401 NaN 1 Median NaN NaN NaN 0 0 Median 1.856 1.5401 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3188400 991870 2196600 0 0 0 3188400 991870 2196600 0 0 0 0 0 0 0 0 0 0 0 0 8436 4228 8764 41726 41715 41715 1 EYLSEEVQAVHK NPTIVNFPITNVDLREYLSEEVQAVHKNTT DLREYLSEEVQAVHKNTTYDLIANIVHDGK R E Y H K N 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 1 0 0 1 2 0 0 12 0 1430.7042 B9A018;Q53GS9;A0A087X1B2 B9A018 482 493 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2;3 6.0608E-07 129.38 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 1.0257 0.98608 7.4426 11 Median 0.96501 0.90825 8.9479 2 0 Median 1.1281 0.9609 6.8871 2 1 Median 0.96036 0.96744 7.0452 4 3 Median 1.2222 1.052 3.1511 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106770000 47860000 58914000 21316000 7866000 13450000 8847800 4241700 4606100 56732000 27365000 29367000 19878000 8386900 11491000 0 0 0 0 0 0 8437 654 8765 41727;41728;41729;41730;41731;41732;41733;41734;41735;41736;41737;41738;41739 41716;41717;41718;41719;41720;41721;41722;41723;41724;41725;41726;41727;41728;41729;41730 41722 15 EYLSSLQPR LSNKEKILKEIEVKKEYLSSLQPRLNSIMQ EIEVKKEYLSSLQPRLNSIMQASLPVQEYL K E Y P R L 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 2 0 0 1 0 0 0 9 0 1091.5611 Q13769;F8WCP5;H7C072 Q13769 224 232 THOC5 THO complex subunit 5 homolog yes no 2 0.00094316 89.296 By matching By MS/MS 1 1 0.99157 0.97726 39.047 2 Median 1.3407 1.288 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73333 0.74148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26343000 14563000 11781000 2940800 1480300 1460500 0 0 0 23403000 13083000 10320000 0 0 0 0 0 0 0 0 0 8438 2837 8766 41740;41741 41731;41732;41733 41732 3 EYLTSHLEIR YVPNMVVWEHTFTPREYLTSHLEIRFTKSI TFTPREYLTSHLEIRFTKSIVGMTMYNQAT R E Y I R F 0 1 0 0 0 0 2 0 1 1 2 0 0 0 0 1 1 0 1 0 0 0 10 0 1259.651 Q9Y2A7 Q9Y2A7 706 715 NCKAP1 Nck-associated protein 1 yes yes 2;3 0.00039083 78.934 By MS/MS By MS/MS By MS/MS 2 3 2 1.0149 1.0165 27.742 7 Median 0.99471 0.95053 1.0508 2 0 Median NaN NaN NaN 0 0 Median 2.1363 2.0899 39.186 3 1 Plateau 1.2761 1.0585 6.244 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31186000 13155000 18031000 15416000 6418200 8997900 0 0 0 9482800 4078400 5404300 6287200 2658200 3629000 0 0 0 0 0 0 8439 4383 8767 41742;41743;41744;41745;41746;41747;41748 41734;41735;41736;41737 41734 4 EYMEEEIPK RAFTGRFLCNMTFLKEYMEEEIPKNYSIAQ NMTFLKEYMEEEIPKNYSIAQKRALFFRFV K E Y P K N 0 0 0 0 0 0 4 0 0 1 0 1 1 0 1 0 0 0 1 0 0 0 9 0 1166.5165 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1715 1723 TRRAP Transformation/transcription domain-associated protein yes no 2 0.019204 40.067 By MS/MS 1 0.97766 1.0535 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97766 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4484900 2130800 2354100 0 0 0 0 0 0 4484900 2130800 2354100 0 0 0 0 0 0 0 0 0 8440 991 8768 41749 41738 41738 1 EYNALVAQGVR HGIDVRVLQTEQAVKEYNALVAQGVRVGGV QAVKEYNALVAQGVRVGGVFHSTC______ K E Y V R V 2 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 11 0 1218.6357 E9PNP3;E9PR47;Q9H7C9;E9PIQ4 E9PNP3 122 132 AAMDC Mth938 domain-containing protein yes no 2 1.0801E-14 182.53 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.94535 0.95936 15.862 6 Median 0.84372 0.81651 NaN 1 0 Median 1.3114 1.1188 NaN 1 0 Median 0.94535 0.95936 1.0172 2 2 Median 1.1358 0.92054 27.204 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95994000 48123000 47870000 46623000 24405000 22219000 33687000 15775000 17913000 10781000 5667200 5113400 4902800 2276800 2626000 0 0 0 0 0 0 8441 974 8769 41750;41751;41752;41753;41754;41755 41739;41740;41741;41742;41743;41744;41745;41746 41744 8 EYNEDEDPAAR TSAPPSKSRHHEMPREYNEDEDPAARRRKK EMPREYNEDEDPAARRRKKKSYYAKLRQQE R E Y A R R 2 1 1 2 0 0 3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 11 0 1307.5266 Q13123;E7EQZ7;D6REL4;D6RAY9;D6RCQ4 Q13123 63 73 IK Protein Red yes no 2 0.001697 57.598 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.88913 0.85647 8.0659 4 Median 0.93477 0.93499 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84573 0.90312 NaN 1 0 Median 0.95325 0.81223 NaN 1 0 Median 0.7486 0.79152 NaN 1 0 Median NaN NaN NaN 0 0 Median 6366100 3441900 2924200 361280 146120 215160 0 0 0 2271900 1168600 1103300 530230 223830 306400 3202700 1903400 1299300 0 0 0 8442 2787 8770 41756;41757;41758;41759 41747;41748;41749 41747 3 EYNEFAEVFLK ARLFERYGSPGNVSKEYNEFAEVFLKAFAV NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY K E Y L K A 1 0 1 0 0 0 3 0 0 0 1 1 0 2 0 0 0 0 1 1 0 0 11 0 1387.666 O95373 O95373 284 294 IPO7 Importin-7 yes yes 2 0.00054228 67.563 By MS/MS By MS/MS By matching 2 1 1 1.1619 1.1546 8.8079 4 Median 1.1824 1.1741 3.0785 2 0 Median 1.1457 0.9845 NaN 1 0 Median 1.1146 1.1604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15748000 7313200 8435000 10906000 4982100 5924400 4168900 2035100 2133800 672810 296020 376790 0 0 0 0 0 0 0 0 0 8443 1768 8771 41760;41761;41762;41763 41750;41751;41752;41753 41753 4 EYNIGVLR QFEDKPALSKTEDRKEYNIGVLRHLQVIFG SKTEDRKEYNIGVLRHLQVIFGHLAASRLQ K E Y L R H 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 962.51853 Q93008;O00507 Q93008 1638 1645 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0027345 105.39 By matching By MS/MS 2 2 1.1649 1.0571 9.9318 4 Median 1.1649 1.1471 7.1643 2 0 Median 1.1962 0.98913 5.0137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21215000 10681000 10534000 6821300 3777200 3044100 14394000 6903900 7489900 0 0 0 0 0 0 0 0 0 0 0 0 8444 3573 8772 41764;41765;41766;41767 41754;41755;41756;41757 41754 4 EYPDAQGFAADVR HPMDLSTVKRKMDGREYPDAQGFAADVRLM GREYPDAQGFAADVRLMFSNCYKYNPPDHE R E Y V R L 3 1 0 2 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 13 0 1437.6525 Q15059 Q15059 369 381 BRD3 Bromodomain-containing protein 3 yes yes 2 6.6201E-07 104.79 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.0732 0.87141 46.42 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97083 1.0046 53.158 2 0 Median 1.1621 1.0013 65.498 3 0 Median 0.66361 0.68335 NaN 1 1 Median 1.0732 0.87141 NaN 1 0 Median 70441000 41134000 29307000 0 0 0 0 0 0 56491000 33538000 22953000 3460800 1722500 1738300 7666400 4524000 3142400 2822500 1349300 1473200 8445 2923 8773 41768;41769;41770;41771;41772;41773;41774 41758;41759;41760;41761 41759 4 EYPDFNFVGR GPIVQLQEKLYVPVKEYPDFNFVGRILGPR YVPVKEYPDFNFVGRILGPRGLTAKQLEAE K E Y G R I 0 1 1 1 0 0 1 1 0 0 0 0 0 2 1 0 0 0 1 1 0 0 10 0 1242.5669 Q96PU8;F5GXS8;F5GYM3;F5H5U6;F5H8C8 Q96PU8 92 101 QKI Protein quaking yes no 2 0.00041576 75.738 By matching By MS/MS By matching By matching 1 3 1 1 0.91987 0.82559 39.907 6 Median 1.8766 1.8546 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69306 0.75714 19.89 3 0 Median 1.0614 0.89497 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0187 0.84252 NaN 1 0 Median 22866000 11971000 10895000 1726800 497650 1229100 0 0 0 20562000 11168000 9394900 201240 107460 93776 0 0 0 375620 198780 176840 8446 3715 8774 41775;41776;41777;41778;41779;41780 41762;41763;41764;41765 41762 4 EYPFILDAFQR EDYLPLKPRVGKAAKEYPFILDAFQREAIQ KAAKEYPFILDAFQREAIQCVDNNQSVLVS K E Y Q R E 1 1 0 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 11 0 1397.698 P42285 P42285 135 145 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0020633 55.567 By MS/MS By matching By MS/MS 1 1 4 1.1107 1.2217 14.482 5 Median 1.0598 1.0386 NaN 1 0 Median 1.5949 1.4547 NaN 1 0 Median 1.1107 1.2217 11.341 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17167000 7757000 9410100 2587100 1235200 1351800 684320 201520 482800 13896000 6320300 7575500 0 0 0 0 0 0 0 0 0 8447 2309 8775 41781;41782;41783;41784;41785;41786 41766;41767;41768;41769;41770;41771;41772;41773 41767 8 EYPSEQIIVTEK CKASNRRPSVYLPTREYPSEQIIVTEKTNI PTREYPSEQIIVTEKTNILLRYLHQQWDKK R E Y E K T 0 0 0 0 0 1 3 0 0 2 0 1 0 0 1 1 1 0 1 1 0 0 12 0 1434.7242 Q9BW61 Q9BW61 40 51 DDA1 DET1- and DDB1-associated protein 1 yes yes 2 0.0044584 43.512 By matching By MS/MS 1 1 0.91826 0.80914 0.38638 2 Median 0.8629 0.80694 NaN 1 0 Median 0.97718 0.81136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4777600 2208800 2568900 1412200 842810 569360 3365500 1366000 1999500 0 0 0 0 0 0 0 0 0 0 0 0 8448 3864 8776 41787;41788 41774 41774 1 EYQAGDFEAAER KRMLSFQGLAELAHREYQAGDFEAAERHCM AHREYQAGDFEAAERHCMQLWRQEPDNTGV R E Y E R H 3 1 0 1 0 1 3 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 12 0 1384.5895 O15294;C9JZL3 O15294 31 42 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 2 3.9018E-06 123.79 By MS/MS By MS/MS By MS/MS 1 1 1 1.0675 1.1336 16.161 3 Plateau NaN NaN NaN 0 0 Median 1.2536 1.0584 NaN 1 0 Median 1.0675 1.1336 NaN 1 0 Median 0.98099 0.83324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19976000 9432400 10544000 0 0 0 4941700 2246500 2695200 10306000 5081500 5224400 4728900 2104400 2624500 0 0 0 0 0 0 8449 1537 8777 41789;41790;41791 41775;41776;41777;41778;41779 41776 5 EYQDAFLFNELK YSLFLDESRSTQYMKEYQDAFLFNELKGET YMKEYQDAFLFNELKGETMDTS________ K E Y L K G 1 0 1 1 0 1 2 0 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 0 1515.7246 Q9Y230 Q9Y230 445 456 RUVBL2 RuvB-like 2 yes yes 2 0.00062094 66.595 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.0556 1.038 13.912 5 Median 1.0556 1.038 NaN 1 0 Median 1.2732 1.0838 NaN 1 0 Median 0.92722 0.92217 22.025 2 0 Median 1.0028 0.89268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16797000 7442300 9355100 1044300 482510 561810 4876500 1897800 2978700 10747000 5000600 5746600 129280 61339 67937 0 0 0 0 0 0 8450 4368 8778 41792;41793;41794;41795;41796 41780;41781;41782 41781 3 EYQDLLNVK DEIQNMKEEMARHLREYQDLLNVKMALDIE MARHLREYQDLLNVKMALDIEIATYRKLLE R E Y V K M 0 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1120.5764 P08670;B0YJC4;B0YJC5;P17661;Q16352;E7EMV2;E7ESP9;P07197;P07196 P08670 382 390 VIM;DES;INA;NEFM;NEFL Vimentin;Desmin;Alpha-internexin;Neurofilament medium polypeptide;Neurofilament light polypeptide no no 2 0.0046036 75.854 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 1 1.0384 0.87095 76.96 6 Median 0.83763 0.79637 103.76 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67283 0.57542 77.241 2 0 Median 2.2651 2.269 NaN 1 1 Median 0.9305 0.76348 NaN 1 0 Median 271730000 77371000 194360000 241910000 66895000 175020000 0 0 0 970820 653250 317570 10134000 4663600 5470100 16188000 3921000 12267000 2522800 1238600 1284100 8451 1907;859;1881 8779 41797;41798;41799;41800;41801;41802;41803;41804 41783;41784;41785;41786;41787 41783 5 EYQELMNTK EALQKAKQDMARLLREYQELMNTKLALDVE MARLLREYQELMNTKLALDVEIATYRKLLE R E Y T K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1154.5278 CON__P13647;P13647;H0YI76 CON__P13647 452 460 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00052905 103.56 By MS/MS By MS/MS By MS/MS 1 2 1 0.12493 0.10926 168.12 4 Median NaN NaN NaN 0 0 Median 0.094512 0.08325 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.089854 0.077057 87.833 2 2 Median 2.0411 1.9494 NaN 1 1 Median NaN NaN NaN 0 0 Median 28986000 15236000 13750000 0 0 0 9059200 8344800 714490 0 0 0 3111300 2835600 275750 16815000 4055500 12760000 0 0 0 + 8452 757 8780 41805;41806;41807;41808 41788;41789;41790;41791 41789 4 EYQELMNVK AALQRAKQDMARQLREYQELMNVKLALDIE MARQLREYQELMNVKLALDIEIATYRKLLE R E Y V K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1152.5485 P05787;CON__P05787;CON__H-INV:HIT000292931;Q8IWY7;CON__P02538;P02538;CON__P04259;CON__P48668;P48668 P05787 373 381 KRT8;KRT6A;KRT6C Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.00025668 139.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 9 9 8 7 1.2228 1.1036 53.15 39 Median 1.1805 1.0996 43.185 3 0 Median 1.7277 1.4707 18.527 3 0 Median 1.1269 1.0784 50.769 9 2 Median 1.1019 0.94445 80.63 9 1 Median 1.2883 1.2686 26.745 8 0 Median 1.2351 0.99955 13.232 7 0 Median 1473400000 643340000 830080000 174210000 74213000 99995000 110640000 42521000 68120000 484620000 220180000 264430000 187750000 82573000 105170000 364830000 153950000 210880000 151380000 69900000 81478000 + 8453 750;741;748;766 8781;8782 41809;41810;41811;41812;41813;41814;41815;41816;41817;41818;41819;41820;41821;41822;41823;41824;41825;41826;41827;41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845;41846;41847 41792;41793;41794;41795;41796;41797;41798;41799;41800;41801;41802;41803;41804;41805;41806;41807;41808;41809;41810;41811;41812;41813;41814;41815;41816;41817;41818;41819;41820;41821;41822;41823;41824;41825;41826;41827;41828;41829;41830;41831;41832;41833;41834;41835;41836;41837;41838;41839;41840;41841;41842;41843;41844;41845;41846 41834 263 55 EYQISAGDFPEVK ELISRLPEIYIQLQREYQISAGDFPEVKAM QREYQISAGDFPEVKAMQEQLENYDFTKFH R E Y V K A 1 0 0 1 0 1 2 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 13 0 1481.7038 Q9H223 Q9H223 348 360 EHD4 EH domain-containing protein 4 yes yes 2 0.00073014 66.595 By MS/MS By MS/MS By matching 1 1 1 0.93969 0.80079 8.301 3 Median 0.83915 0.80039 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94859 0.92438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93969 0.80079 NaN 1 0 Median 17029000 8403200 8625900 6103000 3123500 2979500 0 0 0 10330000 4973200 5356400 0 0 0 0 0 0 596460 306450 290010 8454 3939 8783 41848;41849;41850 41847;41848;41849 41848 3 EYQLNDSAAYYLNDLER LWADHGVQACFGRSREYQLNDSAAYYLNDL QLNDSAAYYLNDLERIAQSDYIPTQQDVLR R E Y E R I 2 1 2 2 0 1 2 0 0 0 3 0 0 0 0 1 0 0 3 0 0 0 17 0 2075.9436 P04899 P04899 146 162 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 0.049184 21.301 By MS/MS 1 1.0294 1.1007 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0294 1.1007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1441200 628370 812820 0 0 0 0 0 0 1441200 628370 812820 0 0 0 0 0 0 0 0 0 8455 1855 8784 41851 41850 41850 1 EYQPHVIVSTTGPNPFTTLTDR VQGELVTASKAIIEKEYQPHVIVSTTGPNP VSTTGPNPFTTLTDRELEEYRREVERKQKG K E Y D R E 0 1 1 1 0 1 1 1 1 1 1 0 0 1 3 1 5 0 1 2 0 0 22 0 2472.2285 E7EV99;E7ENY0;P35611;H0Y9H2 E7EV99 549 570 ADD1 Alpha-adducin yes no 3 6.714E-14 85.932 By MS/MS By matching 1 1 0.63932 0.60898 13.443 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52261 0.55375 NaN 1 0 Median 0.78211 0.6697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18485000 11992000 6492500 0 0 0 0 0 0 17766000 11590000 6176900 718120 402490 315640 0 0 0 0 0 0 8456 866 8785 41852;41853 41851;41852;41853 41852 3 EYQTQLIQR FNALFVRPHIRGAIREYQTQLIQRVKDDIE IRGAIREYQTQLIQRVKDDIESLHDKFKVQ R E Y Q R V 0 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1177.6091 Q14204 Q14204 603 611 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 1.9641E-10 170.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1.1722 1.0936 12.21 9 Median 1.0867 1.0534 10.543 2 0 Median 1.248 1.024 9.3006 2 1 Median 1.0636 1.1406 8.6125 2 0 Median 1.3786 1.2065 23.785 2 0 Median NaN NaN NaN 0 0 Median 1.3925 1.1556 NaN 1 0 Median 168590000 77435000 91150000 32599000 15832000 16767000 58517000 25957000 32560000 60573000 28621000 31951000 12795000 5529600 7265800 0 0 0 4101300 1495900 2605400 8457 2865 8786 41854;41855;41856;41857;41858;41859;41860;41861;41862;41863 41854;41855;41856;41857;41858;41859;41860;41861 41854 7 EYRDAQEFGADVR HPMDMSTIKSKLEAREYRDAQEFGADVRLM AREYRDAQEFGADVRLMFSNCYKYNPPDHE R E Y V R L 2 2 0 2 0 1 2 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 13 1 1554.7063 O60885;M0QZD9 O60885 411 423 BRD4 Bromodomain-containing protein 4 yes no 3 0.00015068 72.681 By MS/MS 1 1.1031 1.3934 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1031 1.3934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16859000 7376400 9482800 0 0 0 0 0 0 16859000 7376400 9482800 0 0 0 0 0 0 0 0 0 8458 1638 8787 41864 41862 41862 1 EYRDLTTAGAVTQCYR WLRYDSRSGTHNMYREYRDLTTAGAVTQCY YRDLTTAGAVTQCYRDMGARHRARAHSIQI R E Y Y R D 2 2 0 1 1 1 1 1 0 0 1 0 0 0 0 0 3 0 2 1 0 0 16 1 1902.8894 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 67 82 RPL18A 60S ribosomal protein L18a yes no 3 3.2188E-10 116.78 By MS/MS By matching 1 1 1.0286 0.98715 38.217 2 Median NaN NaN NaN 0 0 Median 0.88711 0.75339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1926 1.2934 NaN 1 0 Median NaN NaN NaN 0 0 Median 7838300 4296100 3542200 0 0 0 6532700 3807200 2725500 0 0 0 0 0 0 1305500 488830 816710 0 0 0 8459 1433 8788 41865;41866 41863;41864 41863 2 EYRPETGSWVFK GRLEAVSRKQGAQFKEYRPETGSWVFKVSH QFKEYRPETGSWVFKVSHFSKYGLQDSDEE K E Y F K V 0 1 0 0 0 0 2 1 0 0 0 1 0 1 1 1 1 1 1 1 0 0 12 1 1497.7252 P52948;A0A3B3ITD8 P52948 865 876 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 3 0.049195 28.624 By MS/MS 1 0.65862 0.74572 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65862 0.74572 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20475000 12019000 8455600 0 0 0 0 0 0 20475000 12019000 8455600 0 0 0 0 0 0 0 0 0 8460 2462 8789 41867 41865 41865 1 EYSLQVLK AVAVALKQACTPMFREYSLQVLKNARAMAD ACTPMFREYSLQVLKNARAMADALLERGYS R E Y L K N 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 8 0 978.5386 P34897;H0YIZ0;G3V2Y4 P34897 349 356 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.0060114 73.039 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 3 1 1 1.372 1.156 23.427 10 Median 1.0708 0.98724 NaN 1 0 Median 1.3223 1.1238 0.56774 2 0 Median 1.0399 1.0208 8.9031 2 0 Median 1.4979 1.2839 19.412 3 0 Median 2.0715 1.9763 NaN 1 0 Median 1.6978 1.3995 NaN 1 0 Median 88682000 39244000 49438000 26624000 12306000 14318000 19115000 8343500 10771000 18457000 9454100 9003000 17341000 6745600 10595000 3403500 1125900 2277600 3741500 1269400 2472100 8461 2228 8790 41868;41869;41870;41871;41872;41873;41874;41875;41876;41877 41866;41867;41868;41869;41870;41871;41872;41873 41867 8 EYSSELNAPSQESDSHPR RRDQMIKGAIEVLIREYSSELNAPSQESDS SELNAPSQESDSHPRKKKKEKKEDIFRRFP R E Y P R K 1 1 1 1 0 1 3 0 1 0 1 0 0 0 2 5 0 0 1 0 0 0 18 0 2031.877 P49756;E9PQU5 P49756 217 234 RBM25 RNA-binding protein 25 yes no 3 1.055E-08 95.197 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1 2 0.82206 0.73906 16.708 11 Median 1.0219 1.0331 NaN 1 1 Median 0.71888 0.6151 NaN 1 0 Median 0.65885 0.69801 13.386 3 0 Median 0.85762 0.73906 20.831 3 0 Median 0.70256 0.74315 NaN 1 0 Median 0.87113 0.72714 5.8125 2 0 Median 65970000 38626000 27344000 778390 639180 139200 2204300 1475100 729190 36730000 22384000 14346000 18250000 9547200 8703000 3089000 1775300 1313700 4918300 2805800 2112500 8462 2397 8791 41878;41879;41880;41881;41882;41883;41884;41885;41886;41887;41888 41874;41875;41876;41877;41878;41879;41880;41881;41882;41883;41884;41885;41886 41878 12 EYSVLNAVDQAR QYDHCKALRRELKEKEYSVLNAVDQARVFL KEKEYSVLNAVDQARVFLADQPIEAPEEPR K E Y A R V 2 1 1 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 12 0 1363.6732 P46939;Q5T097 P46939 2613 2624 UTRN Utrophin yes no 2 0.05884 54.608 By MS/MS By matching 2 1 0.9703 0.94139 25.65 3 Median 0.89682 0.8779 9.8742 2 0 Median NaN NaN NaN 0 0 Median 1.2168 1.3462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14284000 7541300 6742800 11766000 6304700 5461300 0 0 0 2518100 1236600 1281500 0 0 0 0 0 0 0 0 0 8463 2349 8792 41889;41890;41891 41887;41888 41887 0 EYTAAVEAK LILDDVAITELSFSREYTAAVEAKQVAQQE ELSFSREYTAAVEAKQVAQQEAQRAQFLVE R E Y A K Q 3 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 980.48148 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6;U3KPZ5 J3KPX7 192 200 PHB2 Prohibitin-2 yes no 2 0.0014585 81.296 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2837 1.1507 11.29 4 Median 1.076 0.97852 NaN 1 0 Median 1.4116 1.1811 NaN 1 0 Median 1.1673 1.1212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5484 1.2802 NaN 1 0 Median 70893000 30071000 40822000 18979000 8897100 10082000 47930000 19442000 28488000 2141000 1014600 1126400 0 0 0 0 0 0 1842800 716640 1126100 8464 1313 8793 41892;41893;41894;41895 41889;41890;41891;41892;41893;41894;41895 41893 7 EYTDVYPEIIER KIPIKRSDMLKDIIKEYTDVYPEIIERAGY IIKEYTDVYPEIIERAGYSLEKVFGIQLKE K E Y E R A 0 1 0 1 0 0 3 0 0 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1525.73 Q9UNF1;Q5H909;Q5H907;Q9Y5V3 Q9UNF1 312 323 MAGED2;MAGED1 Melanoma-associated antigen D2;Melanoma-associated antigen D1 yes no 2 0.020853 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8465 4343 8794 41896 41896 41896 1 EYTEEIER KPEVNQKLTKKALIKEYTEEIERLKRDLAA TKKALIKEYTEEIERLKRDLAAAREKNGVY K E Y E R L 0 1 0 0 0 0 4 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 8 0 1067.4771 P52732 P52732 377 384 KIF11 Kinesin-like protein KIF11 yes yes 2 0.0078694 65.252 By MS/MS By MS/MS 1 1 0.94406 0.87002 1.4544 2 Median 0.88177 0.87901 NaN 1 0 Median 1.0108 0.86112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4945700 2549300 2396400 1587200 826340 760820 3358500 1722900 1635600 0 0 0 0 0 0 0 0 0 0 0 0 8466 2454 8795 41897;41898 41897;41898 41898 2 EYTINIHK EKKKGRSAINEVVTREYTINIHKRIHGVGF INEVVTREYTINIHKRIHGVGFKKRAPRAL R E Y H K R 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1016.5291 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 24 31 RPL31 60S ribosomal protein L31 yes no 2 0.0035231 91.041 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.0817 0.88869 49.017 8 Median 1.0925 0.88163 24.38 2 0 Median 1.112 0.93206 5.4817 2 0 Median 0.96817 0.97532 14.411 2 0 Median 0.82962 0.67211 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.25668 0.23962 NaN 1 0 Median 100600000 47983000 52613000 31309000 14581000 16728000 44805000 21015000 23790000 19866000 9457200 10409000 2705400 1401900 1303500 0 0 0 1911000 1528700 382220 8467 2607 8796 41899;41900;41901;41902;41903;41904;41905;41906 41899;41900;41901;41902;41903;41904;41905;41906;41907 41904 9 EYTINIHKR EKKKGRSAINEVVTREYTINIHKRIHGVGF NEVVTREYTINIHKRIHGVGFKKRAPRALK R E Y K R I 0 1 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1172.6302 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 24 32 RPL31 60S ribosomal protein L31 yes no 2 1.0753E-05 128.57 By MS/MS By MS/MS 1 2 1.2785 1.1491 3.0511 3 Median 1.1656 1.1491 NaN 1 0 Median 1.3169 1.1625 4.2109 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31997000 12861000 19137000 13576000 6197500 7378100 18421000 6663100 11758000 0 0 0 0 0 0 0 0 0 0 0 0 8468 2607 8797 41907;41908;41909 41908;41909;41910;41911 41910 4 EYTLDVYR EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ TDYQLSKEYTLDVYRLSSVVTQHDSKKAGA K E Y Y R L 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 8 0 1057.508 P54577;A0A0C4DGZ5 P54577 128 135 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.022072 74.127 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.1886 1.0281 49.474 5 Median 0.62951 0.62021 NaN 1 0 Median 1.5694 1.3578 39.329 2 0 Median 1.9608 2.1178 NaN 1 0 Median 1.1861 0.99318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38122000 18192000 19930000 16458000 9410300 7047300 13484000 5903200 7580900 7334100 2476700 4857400 846200 402100 444100 0 0 0 0 0 0 8469 2482 8798 41910;41911;41912;41913;41914;41915 41912;41913;41914;41915 41912 4 EYTQATIYVHK ECREGLLCQQQRDLREYTQATIYVHKVVDN RDLREYTQATIYVHKVVDNKKVMKDSAPEL R E Y H K V 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 2 0 2 1 0 0 11 0 1351.6772 Q86UV5;A0A0A0MRS6 Q86UV5 858 868 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2;3 0.00040118 108.98 By MS/MS By MS/MS 1 2 1.3065 1.1625 2.3629 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0879 1.1625 NaN 1 0 Median 1.3456 1.1718 3.2783 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27083000 11853000 15231000 0 0 0 0 0 0 10490000 4718000 5771900 16593000 7134600 9458900 0 0 0 0 0 0 8470 3281 8799 41916;41917;41918 41916;41917;41918;41919 41919 4 EYVAAQLR EDGTDGLLDSFCDSKEYVAAQLRQLPAQPP DSFCDSKEYVAAQLRQLPAQPPEHAVDGEG K E Y L R Q 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 948.50288 Q14151;K7EQU4;K7ERX3 Q14151 164 171 SAFB2 Scaffold attachment factor B2 yes no 2 0.0024016 117.7 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.90515 0.90958 17.711 6 Median 1.254 1.2577 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91063 0.99889 NaN 1 0 Median 0.8997 0.76615 NaN 1 0 Median 0.8216 0.84651 7.3232 2 0 Median 1.1424 0.92803 NaN 1 0 Median 27451000 14783000 12667000 2132100 1052000 1080100 0 0 0 2634200 1447600 1186500 2075400 1226400 849060 17963000 9692000 8270900 2646200 1365300 1280900 8471 2859 8800 41919;41920;41921;41922;41923;41924 41920;41921;41922;41923;41924;41925 41920 6 EYVAYSHTGR SGKQRYSYQYTVANKEYVAYSHTGRIIPAI TVANKEYVAYSHTGRIIPAIWFRYDLSPIT K E Y G R I 1 1 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 2 1 0 0 10 0 1181.5465 Q969X5 Q969X5 215 224 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 2 0.014003 46.158 By MS/MS By MS/MS 1 1 1.2583 1.0717 NaN 1 Median NaN NaN NaN 0 0 Median 1.2583 1.0717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 780570 273570 507000 0 0 0 780570 273570 507000 0 0 0 0 0 0 0 0 0 0 0 0 8472 3590 8801 41925;41926 41926;41927;41928 41927 3 EYVDLER FPASWQGEQRQTPSREYVDLEREAGKVYLK EQRQTPSREYVDLEREAGKVYLKAPMILNG R E Y E R E 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 922.43961 Q13951;A0A494C0A9 Q13951 84 90 CBFB Core-binding factor subunit beta yes no 2 0.014908 73.039 By MS/MS By MS/MS By matching 1 1 1 1.2309 1.1806 35.446 3 Plateau 1.2271 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2309 1.1806 NaN 1 0 Median 0.76718 0.633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11764000 5000900 6762700 5135400 1994700 3140700 0 0 0 5777500 2612600 3164900 850760 393670 457090 0 0 0 0 0 0 8473 2848 8802 41927;41928;41929 41929;41930;41931 41931 3 EYVDPNNIFGNR ESISDVGFGMLKSVKEYVDPNNIFGNRNLL SVKEYVDPNNIFGNRNLL____________ K E Y N R N 0 1 3 1 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 1 0 0 12 0 1436.6684 O00116;B8ZZ81 O00116 644 655 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.001095 85.731 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.65505 0.60718 5.8462 5 Median 0.61299 0.58475 9.7752 2 2 Median 0.70161 0.60718 NaN 1 0 Median 0.61066 0.63127 NaN 1 0 Median 0.71104 0.595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33488000 19565000 13923000 19852000 12107000 7744600 6353000 3322700 3030300 6354100 3588500 2765600 929070 546320 382750 0 0 0 0 0 0 8474 1439 8803 41930;41931;41932;41933;41934 41932;41933;41934;41935 41933 4 EYVEHTVK QEQKKRALDVIQAGKEYVEHTVKERKKQLK DVIQAGKEYVEHTVKERKKQLKKEGKPTIV K E Y V K E 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 1 2 0 0 8 0 1003.4975 O75937 O75937 128 135 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.049701 34.808 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1.2076 1.0394 13.495 5 Median 1.2431 1.234 NaN 1 0 Median 1.224 1.0394 NaN 1 0 Median 1.1306 1.0978 NaN 1 0 Median 1.2076 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0362 0.85081 NaN 1 0 Median 4291500 1935000 2356500 565410 245140 320270 405350 185960 219390 1379300 659080 720230 1845800 801620 1044100 0 0 0 95691 43178 52513 8475 1709 8804 41935;41936;41937;41938;41939 41936;41937 41936 2 EYVEHTVKER QEQKKRALDVIQAGKEYVEHTVKERKKQLK IQAGKEYVEHTVKERKKQLKKEGKPTIVEE K E Y E R K 0 1 0 0 0 0 3 0 1 0 0 1 0 0 0 0 1 0 1 2 0 0 10 1 1288.6412 O75937 O75937 128 137 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 3 0.0060067 37.556 By matching By MS/MS By matching 1 1 1 0.94229 0.92189 15.03 3 Median 0.94229 0.92189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90802 0.85691 NaN 1 0 Median 1.0689 1.1441 NaN 1 0 Median NaN NaN NaN 0 0 Median 1481200 724390 756770 247720 123840 123880 0 0 0 0 0 0 700080 314790 385290 533350 285750 247600 0 0 0 8476 1709 8805 41940;41941;41942 41938;41939 41938 2 EYVESQLQR KVDQYKGKRDLESLREYVESQLQRTETGAT DLESLREYVESQLQRTETGATETVTPSEAP R E Y Q R T 0 1 0 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1150.5619 Q8NBS9 Q8NBS9 288 296 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 8.5976E-05 148.38 By MS/MS By MS/MS 1 1 1.0547 0.94153 15.502 2 Median 0.88873 0.84378 NaN 1 0 Median 1.2517 1.0506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40939000 19374000 21565000 16338000 8515000 7822900 24601000 10859000 13743000 0 0 0 0 0 0 0 0 0 0 0 0 8477 3410 8806 41943;41944 41940;41941;41942;41943;41944 41943 5 EYVGIVR ERATRLVKSQQSAGKEYVGIVRLHNAIEGG KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL K E Y V R L 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 2 0 0 7 0 834.45995 O60832;C9IYT0;H7C0M1 O60832 152 158 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.0017395 109.88 By MS/MS By matching 1 1 1.2674 1.2784 28.429 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0332 1.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5547 1.563 NaN 1 0 Median NaN NaN NaN 0 0 Median 15068000 5899000 9169200 0 0 0 0 0 0 8395100 3712200 4682900 0 0 0 6673100 2186800 4486300 0 0 0 8478 1634 8807 41945;41946 41945 41945 1 EYVNIQTFR QREGLIKHILAKREKEYVNIQTFRFFVGTW LAKREKEYVNIQTFRFFVGTWNVNGQSPDS K E Y F R F 0 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 9 0 1168.5877 Q01968;A0A2R8YG38 Q01968 233 241 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 2 0.035762 34.824 By MS/MS 1 86.81 82.599 NaN 1 Median 86.81 82.599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 454560000 7854800 446700000 454560000 7854800 446700000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8479 2694 8808 41947 41946;41947 41947 2 EYWDYEAHVPSWGNQDDYQLVR SRARVYAEVNSLRSREYWDYEAHVPSWGNQ HVPSWGNQDDYQLVRKLGRGKYSEVFEAIN R E Y V R K 1 1 1 3 0 2 2 1 1 0 1 0 0 0 1 1 0 2 3 2 0 0 22 0 2769.2096 P19784;H3BNI9 P19784 23 44 CSNK2A2 Casein kinase II subunit alpha yes no 3 4.3153E-07 45.047 By MS/MS 2 1.0258 1.0469 24.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0258 1.0469 24.665 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4284100 1819600 2464500 0 0 0 0 0 0 4284100 1819600 2464500 0 0 0 0 0 0 0 0 0 8480 2069 8809 41948;41949 41948 41948 1 EYWDYESHVVEWGNQDDYQLVR SRARVYTDVNTHRPREYWDYESHVVEWGNQ HVVEWGNQDDYQLVRKLGRGKYSEVFEAIN R E Y V R K 0 1 1 3 0 2 3 1 1 0 1 0 0 0 0 1 0 2 3 3 0 0 22 0 2829.2307 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1;A0A2R8YDY7;A0A2R8YCK2;A0A2R8Y7T1;A0A2R8YF47;V9GY80;A0A2R8YEL7;A0A2R8Y797;A0A2R8Y3W6 P68400 22 43 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3 3.159E-12 63.857 By MS/MS By matching 2 1 1.0858 1.0651 4.3312 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0288 1.0743 1.2092 2 0 Median 1.1762 0.9981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19614000 9107300 10507000 0 0 0 0 0 0 19477000 9051100 10426000 136610 56118 80495 0 0 0 0 0 0 8481 394 8810 41950;41951;41952 41949;41950 41950 2 EYWMDPEGEMKPGR VSVRDFKGKVLIDIREYWMDPEGEMKPGRK REYWMDPEGEMKPGRKGISLNPEQWSQLKE R E Y G R K 0 1 0 1 0 0 3 2 0 0 0 1 2 0 2 0 0 1 1 0 0 0 14 1 1723.7334 P53999 P53999 87 100 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2;3 8.905E-06 96.89 By MS/MS By matching By MS/MS By matching By matching 2 2 2 1 2 0.86743 0.83739 21.359 9 Median 0.71753 0.7092 7.6973 2 0 Median 1.0469 0.92339 26.609 2 0 Median 0.87411 0.90711 11.309 2 0 Median NaN NaN NaN 0 0 Median 1.0969 1.2339 NaN 1 0 Median 1.0088 0.80802 21.983 2 0 Median 42805000 22675000 20130000 18294000 10123000 8171600 1465600 752520 713090 19909000 10425000 9484300 0 0 0 2028600 883300 1145300 1107500 491560 615980 8482 2478 8811;8812 41953;41954;41955;41956;41957;41958;41959;41960;41961 41951;41952;41953;41954;41955;41956 41955 1164 6 EYWMDPEGEMKPGRK VSVRDFKGKVLIDIREYWMDPEGEMKPGRK EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ R E Y R K G 0 1 0 1 0 0 3 2 0 0 0 2 2 0 2 0 0 1 1 0 0 0 15 2 1851.8284 P53999 P53999 87 101 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 3 0.0010843 37.156 By matching By matching By MS/MS 1 1 1 0.83016 0.84944 12.142 3 Median 0.70191 0.73784 NaN 1 0 Median 0.83016 0.84944 NaN 1 0 Median 0.83256 0.9396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16637000 9378400 7258800 7005500 3936100 3069500 1055700 606080 449640 8575900 4836200 3739700 0 0 0 0 0 0 0 0 0 8483 2478 8813 41962;41963;41964 41957 41957 1 EYYTQNMER GLSFKDDMPKSDVNKEYYTQNMEREISNSD KSDVNKEYYTQNMEREISNSDGTRPVGMLG K E Y E R E 0 1 1 0 0 1 2 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 9 0 1232.5132 Q9NW64;E5RJW4;E5RHA8 Q9NW64 115 123 RBM22 Pre-mRNA-splicing factor RBM22 yes no 2 0.027852 50.878 By MS/MS 1 1.0104 0.99353 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0104 0.99353 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909370 445190 464190 0 0 0 0 0 0 909370 445190 464190 0 0 0 0 0 0 0 0 0 8484 4146 8814 41965 41958 41958 1 FAAATGATPIAGR SVISSRNTGQRAVLKFAAATGATPIAGRFT LKFAAATGATPIAGRFTPGTFTNQIQAAFR K F A G R F 5 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1202.6408 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 90 102 RPSA 40S ribosomal protein SA yes no 2 1.2532E-11 173.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 3 3 1 2 0.97422 0.89663 23.197 18 Median 0.90194 0.87444 13.171 5 3 Median 0.97765 0.82669 40.652 5 2 Median 1.0048 1.0331 0.50302 2 0 Median 1.1638 0.96444 10.203 3 0 Median 0.98555 0.99254 NaN 1 0 Median 1.1126 0.89551 19.803 2 0 Median 1000300000 489410000 510920000 310360000 157750000 152600000 379870000 184770000 195100000 161760000 76234000 85525000 109930000 50773000 59154000 21420000 10903000 10516000 16997000 8979800 8017300 8485 232 8815 41966;41967;41968;41969;41970;41971;41972;41973;41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984 41959;41960;41961;41962;41963;41964;41965;41966;41967;41968;41969;41970;41971;41972;41973;41974;41975;41976;41977;41978;41979;41980;41981;41982;41983;41984;41985;41986;41987;41988;41989;41990;41991 41964 33 FAAEDIIDPIAK QQLANSFFPDTDLDKFAAEDIIDPIAKAKM LDKFAAEDIIDPIAKAKMVALKGIKKVMAQ K F A A K A 3 0 0 2 0 0 1 0 0 3 0 1 0 1 1 0 0 0 0 0 0 0 12 0 1301.6867 O14686 O14686 3415 3426 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.00051621 76.465 By MS/MS By matching 1 1 0.9142 0.90552 20.703 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73145 0.7822 NaN 1 0 Median 1.1426 1.0483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10960000 6163500 4796400 0 0 0 0 0 0 10595000 6000200 4595000 364750 163290 201460 0 0 0 0 0 0 8486 1490 8816 41985;41986 41992;41993 41993 2 FAAEHTIFASNTSSLQITSIANATTR ENLKVKNELFKRLDKFAAEHTIFASNTSSL TSSLQITSIANATTRQDRFAGLHFFNPVPV K F A T R Q 5 1 2 0 0 1 1 0 1 3 1 0 0 2 0 4 5 0 0 0 0 0 26 0 2751.3828 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQV5;A0A1W2PQC2;A0A1W2PRT2 A0A0D9SFP2 141 166 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 3 4.3425E-13 52.79 By MS/MS 1 1.0299 1.0182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0299 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3854600 1989400 1865200 0 0 0 0 0 0 3854600 1989400 1865200 0 0 0 0 0 0 0 0 0 8487 269 8817 41987 41994;41995 41995 2 FAAFFGNVPIFHIPGR DLKLIVTSATMDAEKFAAFFGNVPIFHIPG AAFFGNVPIFHIPGRTFPVDILFSKTPQED K F A G R T 2 1 1 0 0 0 0 2 1 2 0 0 0 4 2 0 0 0 0 1 0 0 16 0 1788.9464 Q92620;J3KTG2 Q92620 692 707 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 3 0.0097889 23.831 By MS/MS By MS/MS 3 2 0.7234 0.79169 11.374 5 Median 0.87562 0.8568 11.268 3 0 Median NaN NaN NaN 0 0 Median 0.6911 0.73318 10.857 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3906100 2198500 1707600 1423700 772720 650950 0 0 0 2482400 1425800 1056700 0 0 0 0 0 0 0 0 0 8488 3546 8818 41988;41989;41990;41991;41992 41996;41997;41998 41996 3 FAAGHDAEGSHSHVHFDEK AAANKGNKPRVRSIRFAAGHDAEGSHSHVH HDAEGSHSHVHFDEKLHDSVVMVTQESDSS R F A E K L 3 0 0 2 0 0 2 2 4 0 0 1 0 2 0 2 0 0 0 1 0 0 19 0 2076.9038 Q9GZN8;H7BYU9 Q9GZN8 17 35 C20orf27 UPF0687 protein C20orf27 yes no 4 0.018883 16.312 By MS/MS 1 1.2678 1.1008 NaN 1 Median NaN NaN NaN 0 0 Median 1.2678 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1324700 550550 774130 0 0 0 1324700 550550 774130 0 0 0 0 0 0 0 0 0 0 0 0 8489 3909 8819 41993 41999 41999 1 FAAHLIAGAPSEGSGALKPELSR ELHALRRHYHPIVQRFAAHLIAGAPSEGSG APSEGSGALKPELSRRSATELFEAYSMAEM R F A S R R 5 1 0 0 0 0 2 3 1 1 3 1 0 1 2 3 0 0 0 0 0 0 23 1 2278.207 Q8WTT2 Q8WTT2 707 729 NOC3L Nucleolar complex protein 3 homolog yes yes 3;4 2.0479E-23 99.407 By MS/MS By MS/MS By matching 2 2 2 0.69809 0.78984 18.297 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69668 0.78984 0.35478 2 1 Median NaN NaN NaN 0 0 Median 0.66635 0.73304 6.5632 2 0 Median 1.1521 1.0087 22.698 2 0 Median 51115000 29589000 21527000 0 0 0 0 0 0 20596000 12674000 7921800 0 0 0 28623000 15953000 12670000 1896600 961230 935370 8490 3484 8820 41994;41995;41996;41997;41998;41999 42000;42001;42002;42003;42004;42005 42004 6 FAAKGEGQLGPAER WAFTLKQFAEMYVAKFAAKGEGQLGPAERA KFAAKGEGQLGPAERAKKVEDMMKKLWGDR K F A E R A 3 1 0 0 0 1 2 3 0 0 1 1 0 1 1 0 0 0 0 0 0 0 14 1 1429.7314 P13639 P13639 236 249 EEF2 Elongation factor 2 yes yes 3 0.015056 24.558 By MS/MS 1 1.0739 1.1118 NaN 1 Median 1.0739 1.1118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1606700 701040 905620 1606700 701040 905620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8491 1992 8821 42000 42006;42007 42007 2 FAALDNEEEDKEEEIIK GKEEKSKGKAKPQNKFAALDNEEEDKEEEI ALDNEEEDKEEEIIKEKEPPKQGKEKAKKA K F A I K E 2 0 1 2 0 0 6 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 17 1 2020.9477 Q8NE71;Q5STZ8 Q8NE71 193 209 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 9.4673E-05 45.864 By MS/MS By matching 1 1 0.65068 0.66837 56.436 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0458 0.99615 NaN 1 0 Median 0.40486 0.44844 NaN 1 0 Median NaN NaN NaN 0 0 Median 6600800 3661700 2939100 0 0 0 0 0 0 0 0 0 4418800 2022700 2396100 2182000 1639000 543010 0 0 0 8492 3427 8822 42001;42002 42008;42009 42009 2 FAANPNQNKNVALLSQLYHSPAR NGHKPPGSSEPITVKFAANPNQNKNVALLS KNVALLSQLYHSPARRFGGPVHHQAQRFRF K F A A R R 4 1 4 0 0 2 0 0 1 0 3 1 0 1 2 2 0 0 1 1 0 0 23 1 2552.3248 Q15717 Q15717 183 205 ELAVL1 ELAV-like protein 1 yes yes 3 1.2475E-07 43.198 By MS/MS 1 0.74847 0.81176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74847 0.81176 NaN 1 0 Median NaN NaN NaN 0 0 Median 5154900 2544300 2610600 0 0 0 0 0 0 0 0 0 0 0 0 5154900 2544300 2610600 0 0 0 8493 2964 8823 42003 42010;42011 42011 2 FAAQNLHQNLIR YFAVFDGHGGIRASKFAAQNLHQNLIRKFP ASKFAAQNLHQNLIRKFPKGDVISVEKTVK K F A I R K 2 1 2 0 0 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1423.7684 Q9H0C8;E9PC05 Q9H0C8 162 173 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2;3 1.048E-06 116.77 By matching By matching By MS/MS By MS/MS 3 1 5 2 0.9456 0.91705 25.293 10 Median 0.91711 0.88921 7.0246 3 0 Median 0.919 0.78291 NaN 1 0 Median 0.97297 0.94577 33.717 5 0 Median 1.1674 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159000000 75899000 83098000 20954000 11589000 9365000 772810 369600 403210 62290000 29640000 32650000 74981000 34301000 40680000 0 0 0 0 0 0 8494 3923 8824 42004;42005;42006;42007;42008;42009;42010;42011;42012;42013;42014 42012;42013;42014;42015;42016;42017;42018;42019;42020 42018 9 FAASGGFLHHMAGLSSSK EDDDGIASVPTKQMKFAASGGFLHHMAGLS SGGFLHHMAGLSSSKLSMSKALPLTKVVQN K F A S K L 3 0 0 0 0 0 0 3 2 0 2 1 1 2 0 4 0 0 0 0 0 0 18 0 1803.8726 F6VRR5;Q9BY77;F8WCX5;Q8WUT1 F6VRR5 218 235 POLDIP3 Polymerase delta-interacting protein 3 no no 3;4 2.2574E-14 119.68 By MS/MS By MS/MS By matching 4 9 2 1.1664 1.0495 14.466 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1279 1.0838 6.5641 4 0 Median 1.2618 1.0879 17.635 9 0 Median 1.0111 0.96317 3.7506 2 0 Median NaN NaN NaN 0 0 Median 317590000 144950000 172640000 0 0 0 0 0 0 159560000 78608000 80949000 144580000 59684000 84892000 13459000 6656000 6803400 0 0 0 8495 1051;3496 8825;8826 42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029 42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031;42032;42033;42034 42032 357 13 FAASKDPTVSQTFMLDR LKVGSKTEVAECKEKFAASKDPTVSQTFML ASKDPTVSQTFMLDRVFNPEGKALPPMRGF K F A D R V 2 1 0 2 0 1 0 0 0 0 1 1 1 2 1 2 2 0 0 1 0 0 17 1 1912.9353 Q9UKN8 Q9UKN8 133 149 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 0.052487 20.65 By MS/MS 1 1.1019 1.2506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1019 1.2506 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757400 2845100 2912300 0 0 0 0 0 0 5757400 2845100 2912300 0 0 0 0 0 0 0 0 0 8496 4314 8827 42030 42035 42035 1 FAASNPCGNIQR HRPHYSLRTLCRALRFAASNPCGNIQRSLY ALRFAASNPCGNIQRSLYEGFCLGFLTQLD R F A Q R S 2 1 2 0 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 12 0 1333.6197 Q9NU22;Q5T795 Q9NU22 973 984 MDN1 Midasin yes no 2 0.0028628 47.603 By MS/MS 1 0.83342 0.92518 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83342 0.92518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2329900 1246200 1083700 0 0 0 0 0 0 2329900 1246200 1083700 0 0 0 0 0 0 0 0 0 8497 4112 8828 42031 42036;42037 42037 2 FAATTVEEILAK GVRKAPAPFRPASERFAATTVEEILAKMEQ SERFAATTVEEILAKMEQPRKEVLASPDRL R F A A K M 3 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1291.7024 Q9C0C2;E9PKK0 Q9C0C2 156 167 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 2 0.05149 25.559 By MS/MS 1 1.2019 1.1619 NaN 1 Median 1.2019 1.1619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8451500 3761000 4690500 8451500 3761000 4690500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8498 3903 8829 42032 42038 42038 1 FAAVGFHK GHVSVPFLLAYCSSKFAAVGFHKTLTDELA LAYCSSKFAAVGFHKTLTDELAALQITGVK K F A H K T 2 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 1 0 0 8 0 875.46537 D6RCD0;Q8NBQ5 D6RCD0 146 153 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 0.026977 41.502 By MS/MS 1 1.6181 1.3636 NaN 1 Median NaN NaN NaN 0 0 Median 1.6181 1.3636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1796700 649310 1147400 0 0 0 1796700 649310 1147400 0 0 0 0 0 0 0 0 0 0 0 0 8499 819 8830 42033 42039 42039 1 FAAVIMR TIALRARNAEYNPKRFAAVIMRIREPRTTA NAEYNPKRFAAVIMRIREPRTTALIFSSGK R F A M R I 2 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 7 0 806.44728 Q32MN6;P20226;Q7Z6S5;A0A1B0GVC6;Q6SJ96 Q32MN6 146 152 TBP;TBPL2 TATA-box-binding protein;TATA box-binding protein-like protein 2 yes no 2 0.0047406 99.511 By MS/MS By MS/MS By matching 1 2 2 1.0167 0.90545 18.534 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68467 0.74182 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90314 0.94132 12.446 2 0 Median 1.2047 1.0475 20.607 2 0 Median 8823900 4710800 4113100 0 0 0 0 0 0 4083200 2319800 1763400 0 0 0 3065300 1644800 1420400 1675400 746130 929270 8500 2074 8831 42034;42035;42036;42037;42038 42040;42041 42040 2 FAAYFQQGDMESNGK CETHAMLPYDQYLHRFAAYFQQGDMESNGK FAAYFQQGDMESNGKYITKSGTRVDHQTGP R F A G K Y 2 0 1 1 0 2 1 2 0 0 0 1 1 2 0 1 0 0 1 0 0 0 15 0 1691.725 P06744;A0A2U3TZU2;K7EQ48;CON__Q3ZBD7 P06744 348 362 GPI Glucose-6-phosphate isomerase yes no 2 1.7662E-10 167.12 By MS/MS By matching By MS/MS By matching 4 2 1 1 1.0825 1.0026 18.397 8 Median 1.1297 1.0569 11.605 4 0 Median 1.0341 0.88869 3.0132 2 0 Median 1.3408 1.3006 NaN 1 0 Median 0.89116 0.76777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107940000 48761000 59180000 86769000 39208000 47560000 4048000 2005300 2042700 15872000 6943900 8928200 1251400 602910 648530 0 0 0 0 0 0 8501 1875 8832;8833 42039;42040;42041;42042;42043;42044;42045;42046 42042;42043;42044;42045;42046;42047;42048;42049 42045 640 8 FACHSASLTVR ELDNMPLRGKQLRVRFACHSASLTVRNLPQ LRVRFACHSASLTVRNLPQYVSNELLEEAF R F A V R N 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1247.6081 Q15233;C9JYS8;C9IZL7 Q15233 143 153 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 3.8712E-05 103.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 3 6 1.274 1.1937 64.11 16 Median NaN NaN NaN 0 0 Median 1.5956 1.3567 21.949 4 3 Median 1.188 1.1863 NaN 1 0 Median 1.4821 1.2747 14.369 2 0 Median 1.0876 1.0808 7.2334 3 0 Median 1.1543 0.96701 98.112 6 2 Median 153140000 66708000 86434000 0 0 0 32387000 12728000 19660000 13125000 5846000 7278500 5633600 2379700 3253900 67554000 29703000 37851000 34443000 16052000 18391000 8502 2935 8834 42047;42048;42049;42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062 42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062;42063;42064;42065 42064 16 FADAASLLLSLMTSR LGKYREFHRMYGEKRFADAASLLLSLMTSR FADAASLLLSLMTSRIAPRSFWMTLLTDAL R F A S R I 3 1 0 1 0 0 0 0 0 0 4 0 1 1 0 3 1 0 0 0 0 0 15 0 1594.8389 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7;J3QL91;J3QS63 Q9BW27 553 567 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.0010351 43.628 By MS/MS 1 1.25 1.2665 NaN 1 Median 1.25 1.2665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 943000 404300 538690 943000 404300 538690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8503 3861 8835 42063 42066;42067 42067 2 FADEGTVVK EYNDLKTELKDYLKRFADEGTVVKREDIQQ KDYLKRFADEGTVVKREDIQQFFEEFQKKE R F A V K R 1 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 9 0 964.48656 E9PCJ7;Q8N806;H0YJY4;H0YJM2 E9PCJ7 314 322 UBR7 Putative E3 ubiquitin-protein ligase UBR7 yes no 2 0.06063 28.174 By MS/MS By matching By matching 1 1 1 4.3029 4.9242 107.7 3 Median NaN NaN NaN 0 0 Median 1.1535 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.3029 4.9242 NaN 1 0 Median 7.3716 7.8186 NaN 1 0 Median NaN NaN NaN 0 0 Median 20107000 4309300 15798000 0 0 0 1317300 609450 707890 0 0 0 16438000 3531200 12906000 2352400 168670 2183800 0 0 0 8504 911 8836 42064;42065;42066 42068 42068 1 FADEHVPGSPFTVK SYFPTVPGVYIVSTKFADEHVPGSPFTVKI KFADEHVPGSPFTVKISGEGRVKESITRTS K F A V K I 1 0 0 1 0 0 1 1 1 0 0 1 0 2 2 1 1 0 0 2 0 0 14 0 1529.7514 O75369;E7EN95;A0A0C4DGA1 O75369 2075 2088 FLNB Filamin-B yes no 2;3 0.00027164 57.348 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1 0.85384 0.79657 18.544 10 Median 0.92236 0.92627 27.892 3 0 Plateau 0.85226 0.75949 11.676 2 0 Median 0.63336 0.70167 13.783 2 0 Median 0.88569 0.82299 3.7957 2 0 Median 0.98101 1.034 NaN 1 0 Median NaN NaN NaN 0 0 Median 181290000 103040000 78246000 104180000 56850000 47334000 48996000 29932000 19063000 23226000 13602000 9623400 1965500 1022000 943500 2917000 1635100 1281900 0 0 0 8505 1664 8837 42067;42068;42069;42070;42071;42072;42073;42074;42075;42076 42069;42070;42071;42072;42073;42074;42075;42076;42077;42078;42079 42070 11 FADFMVK LTPEPVLKTSGHVDKFADFMVKDVKNGECF KTSGHVDKFADFMVKDVKNGECFRADHLLK K F A V K D 1 0 0 1 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 7 0 856.41531 P41250 P41250 198 204 GARS Glycine--tRNA ligase yes yes 2 0.026776 52.683 By MS/MS By matching 1 2 1.306 1.2562 7.9653 3 Plateau 1.3106 1.268 NaN 1 0 Median 1.2369 1.1054 1.1524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4699900 1952700 2747200 3184400 1272300 1912100 1515500 680390 835080 0 0 0 0 0 0 0 0 0 0 0 0 8506 2301 8838 42077;42078;42079 42080;42081 42081 2 FADFTVYR RKLEMEDYPSFMAKRFADFTVYRNRTLQKW PSFMAKRFADFTVYRNRTLQKWHDKTKLAS R F A Y R N 1 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 8 0 1017.492 Q9NY61 Q9NY61 356 363 AATF Protein AATF yes yes 2 0.01337 53.166 By MS/MS By matching 2 1 1.1117 1.1187 13.518 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1615 1.1878 8.4786 2 0 Median 1.1117 0.96297 NaN 1 0 Median 8298300 3787300 4511000 0 0 0 0 0 0 0 0 0 0 0 0 7766300 3551000 4215400 531960 236390 295580 8507 4172 8839 42080;42081;42082 42082;42083 42082 2 FADLSEAANR AAKNLQEAEEWYKSKFADLSEAANRNNDAL WYKSKFADLSEAANRNNDALRQAKQESTEY K F A N R N 3 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1092.52 P08670;B0YJC4;B0YJC5 P08670 295 304 VIM Vimentin yes no 2 6.5116E-41 221.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 5 8 0.9953 0.88245 22.171 21 Median 0.96329 0.88125 NaN 1 0 Median 1.5851 1.3525 27.917 2 1 Median 0.95156 0.93241 0.4395 2 1 Median 1.1963 1.0265 23.045 3 1 Median 1.0398 1.0448 10.3 5 2 Median 0.94217 0.76295 9.2305 8 0 Median 1034800000 481120000 553700000 173890000 85845000 88040000 149250000 61467000 87787000 79790000 39079000 40710000 103110000 45886000 57223000 332390000 152050000 180340000 196390000 96793000 99602000 8508 1907 8840 42083;42084;42085;42086;42087;42088;42089;42090;42091;42092;42093;42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104 42084;42085;42086;42087;42088;42089;42090;42091;42092;42093;42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106;42107;42108;42109;42110;42111;42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122 42089 39 FADLSEAANRNNDALR AAKNLQEAEEWYKSKFADLSEAANRNNDAL ADLSEAANRNNDALRQAKQESTEYRRQVQS K F A L R Q 4 2 3 2 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 16 1 1775.8551 P08670;B0YJC4;B0YJC5 P08670 295 310 VIM Vimentin yes no 2;3 1.2915E-06 84.753 By MS/MS By MS/MS By MS/MS 2 3 2 1.03 0.93278 33.018 7 Median 0.9199 0.92895 0.58088 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2039 1.3278 27.656 3 0 Median 0.92246 0.81555 15.601 2 0 Median 194730000 89007000 105730000 23590000 11175000 12415000 0 0 0 0 0 0 0 0 0 136200000 60379000 75819000 34946000 17453000 17493000 8509 1907 8841 42105;42106;42107;42108;42109;42110;42111 42123;42124;42125;42126;42127;42128;42129;42130 42123 8 FADQDDIGNVSFDR NKRNTVDLFGFNDEKFADQDDIGNVSFDRV KFADQDDIGNVSFDRVSDINFTLNTNESGN K F A D R V 1 1 1 4 0 1 0 1 0 1 0 0 0 2 0 1 0 0 0 1 0 0 14 0 1597.7009 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;H0YEN2 H7BXH2 523 536 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2 9.3617E-08 98.353 By MS/MS By matching 1 1 1.1816 1.0817 19.022 2 Median 1.2798 1.2374 NaN 1 0 Median 1.091 0.94555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6856500 3155500 3701000 5507100 2546700 2960400 1349400 608790 740570 0 0 0 0 0 0 0 0 0 0 0 0 8510 946 8842 42112;42113 42131;42132 42132 2 FADQHVPGSPFSVK TYCPTEPGNYIINIKFADQHVPGSPFSVKV KFADQHVPGSPFSVKVTGEGRVKESITRRR K F A V K V 1 0 0 1 0 1 0 1 1 0 0 1 0 2 2 2 0 0 0 2 0 0 14 0 1514.7518 P21333;Q60FE5 P21333 2120 2133 FLNA Filamin-A no no 2;3 0.00011754 81.799 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 2 1 3 0.77311 0.73746 16.508 14 Median 0.81286 0.84063 3.9148 3 0 Plateau 0.70507 0.61723 2.6879 4 0 Median 0.71375 0.78676 NaN 1 0 Median 0.78305 0.73325 12.077 2 0 Median 0.84786 0.88775 NaN 1 0 Median 0.82731 0.69964 25.692 3 0 Median 303260000 166130000 137130000 161490000 86422000 75064000 113400000 63835000 49562000 16383000 9302600 7080300 4504700 2551800 1952900 6360000 3396700 2963400 1130000 620290 509710 8511 2088;3120 8843 42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127 42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151 42143 19 FAEAFEAIPR YGETCPGLEQYAIKKFAEAFEAIPRALAEN YAIKKFAEAFEAIPRALAENSGVKANEVIS K F A P R A 3 1 0 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 10 0 1149.5819 P50990 P50990 441 450 CCT8 T-complex protein 1 subunit theta yes yes 2 1.0234E-05 152.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 2 2 1.0694 0.95553 23.886 14 Median 1.0129 0.94726 3.3102 3 0 Median 1.0694 0.91846 40.131 4 0 Median 1.1052 1.0649 6.4644 2 0 Median 1.101 0.94661 NaN 1 0 Median 1.2622 1.3144 28.258 2 0 Median 1.1817 0.99187 4.1719 2 0 Median 200150000 94429000 105720000 136830000 65793000 71032000 33534000 15099000 18435000 21466000 10181000 11285000 2098000 899620 1198400 5101300 1900200 3201200 1123400 556440 566920 8512 2423 8844 42128;42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141 42152;42153;42154;42155;42156;42157;42158;42159;42160;42161;42162 42153 11 FAEALGSTEAK ITKLRKMVDQLFCKKFAEALGSTEAKAVPY FCKKFAEALGSTEAKAVPYQKFEAHPNDLY K F A A K A 3 0 0 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1122.5557 P78347;A0A494C1K3;A0A494C0Q7 P78347 478 488 GTF2I General transcription factor II-I yes no 2 0.00011507 132.01 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1.4313 1.2413 22.128 7 Median 1.5167 1.3222 NaN 1 0 Median 1.2245 1.082 26.949 2 0 Median 0.99859 1.0402 18.403 2 0 Median 1.4313 1.2413 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.0026 1.6834 NaN 1 0 Median 41749000 19355000 22395000 13469000 5246200 8223100 6872000 3357600 3514400 17844000 9096300 8747800 2518800 1271200 1247600 0 0 0 1045400 383460 661920 8513 2642 8845 42142;42143;42144;42145;42146;42147;42148;42149 42163;42164;42165;42166 42163 4 FAEASEEAVSVQR VKETLEKELQILKEKFAEASEEAVSVQRSM EKFAEASEEAVSVQRSMQETVNKLHQKEEQ K F A Q R S 3 1 0 0 0 1 3 0 0 0 0 0 0 1 0 2 0 0 0 2 0 0 13 0 1421.6787 J3KP58;P30622;F5H0N7;F5H6A0;A0A3B3ITA2 J3KP58 738 750 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 1.0727E-06 164.43 By MS/MS By matching 1 1 1.2576 1.1843 37.658 2 Median 0.95806 0.90741 NaN 1 0 Median 1.6508 1.5456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7671600 3254700 4416900 5918900 2716800 3202100 1752700 537890 1214800 0 0 0 0 0 0 0 0 0 0 0 0 8514 1308 8846 42150;42151 42167 42167 1 FAEFLLPLLIEK DLILSLRAVLASTPRFAEFLLPLLIEKVDS TPRFAEFLLPLLIEKVDSEVLSAKLDSLQT R F A E K V 1 0 0 0 0 0 2 0 0 1 4 1 0 2 1 0 0 0 0 0 0 0 12 0 1431.8377 Q96T76;Q5T454 Q96T76 255 266 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.027521 29.473 By MS/MS By matching 2 1 0.86076 0.83847 8.6757 3 Median 0.83851 0.81016 4.8579 2 0 Median NaN NaN NaN 0 0 Median 0.89323 0.93003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6423200 3306500 3116800 5756800 2962000 2794800 0 0 0 666470 344490 321990 0 0 0 0 0 0 0 0 0 8515 3742 8847 42152;42153;42154 42168;42169 42169 2 FAEFQYLQPGPPR AQTGIDLSGCTKWWRFAEFQYLQPGPPRRL WRFAEFQYLQPGPPRRLQTVVVYLPDVWTI R F A P R R 1 1 0 0 0 2 1 1 0 0 1 0 0 2 3 0 0 0 1 0 0 0 13 0 1548.7725 Q8N163;H0YB24;G3V119;E5RHJ4 Q8N163 405 417 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 6.9917E-07 141.88 By MS/MS By MS/MS By matching 1 3 1 0.58584 0.6098 6.719 5 Median 0.63289 0.6098 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55164 0.60654 5.7933 3 1 Median NaN NaN NaN 0 0 Median 0.63564 0.67411 NaN 1 0 Median NaN NaN NaN 0 0 Median 35188000 22133000 13055000 11157000 6704500 4452600 0 0 0 21564000 13868000 7695600 0 0 0 2467400 1560700 906720 0 0 0 8516 3354 8848 42155;42156;42157;42158;42159 42170;42171;42172;42173;42174;42175 42172 6 FAEHGETLAMK RNGLKFCKQILSNPKFAEHGETLAMKGLTL SNPKFAEHGETLAMKGLTLNCLGKKEEAYE K F A M K G 2 0 0 0 0 0 2 1 1 0 1 1 1 1 0 0 1 0 0 0 0 0 11 0 1232.586 A0A0B4J1W3;Q9BXJ9;Q6N069 A0A0B4J1W3 42 52 NAA15;NAA16 N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit yes no 2 0.0014 59.245 By MS/MS By MS/MS 1 1 1.2154 1.0595 7.6475 2 Median NaN NaN NaN 0 0 Median 1.1459 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2892 1.1183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120100 2695700 3424400 0 0 0 3934800 1900700 2034200 0 0 0 2185200 795030 1390200 0 0 0 0 0 0 8517 213 8849 42160;42161 42176;42177 42177 2 FAELAQIYAQR TPYCRVGLGICYDMRFAELAQIYAQRGCQL YDMRFAELAQIYAQRGCQLLVYPGAFNLTT R F A Q R G 3 1 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 11 0 1308.6826 Q9NQR4;H7C579 Q9NQR4 158 168 NIT2 Omega-amidase NIT2 yes no 2 0.00011472 131.22 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.3589 1.13 15.511 5 Median 1.0332 0.96531 NaN 1 0 Median 1.5283 1.2883 18.539 2 0 Median 1.1361 1.1235 NaN 1 1 Median 1.4911 1.2544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67226000 30888000 36338000 44357000 21042000 23315000 18554000 7843600 10711000 4005800 1883100 2122700 308790 119310 189470 0 0 0 0 0 0 8518 4064 8850 42162;42163;42164;42165;42166 42178;42179;42180;42181;42182 42178 5 FAELETILGDIDR KFLEFGPENCTSWIKFAELETILGDIDRAR IKFAELETILGDIDRARAIYELAISQPRLD K F A D R A 1 1 0 2 0 0 2 1 0 2 2 0 0 1 0 0 1 0 0 0 0 0 13 0 1490.7617 Q5JY65;Q9BZJ0 Q5JY65 634 646 CRNKL1 Crooked neck-like protein 1 yes no 2 0.0096284 45.973 By MS/MS By MS/MS 1 1 1.1597 1.2109 24.488 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98827 1.0184 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.361 1.4398 NaN 1 0 Median NaN NaN NaN 0 0 Median 1293600 596440 697160 0 0 0 0 0 0 740930 373130 367800 0 0 0 552670 223310 329360 0 0 0 8519 3061 8851 42167;42168 42183;42184 42184 2 FAEMEER GDEEKSRKRKNKDPKFAEMEERFYRYGIKP KRKNKDPKFAEMEERFYRYGIKPEWMMIHR K F A E R F 1 1 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 7 0 910.38547 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 605 611 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.010865 81.297 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.1482 1.0567 10.672 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98575 1.0776 NaN 1 0 Median 1.2038 1.0522 17.273 2 0 Median 0.99822 1.0361 NaN 1 0 Median 1.3703 1.1382 13.61 2 0 Median 20798000 9612400 11186000 0 0 0 0 0 0 9556000 4522800 5033200 3131100 1252500 1878500 6776800 3258900 3517900 1334100 578260 755880 8520 246 8852 42169;42170;42171;42172;42173;42174 42185;42186;42187;42188;42189 42185 5 FAEQLIR IRITKNQVSQLLPEKFAEQLIRVYCKKVDR VSQLLPEKFAEQLIRVYCKKVDRKSLYAAR K F A I R V 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 875.4865 Q9Y3Z3;A0A2R8YCS7;A0A2R8YF18;A0A2R8YFV6 Q9Y3Z3 545 551 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.007586 88.734 By MS/MS By MS/MS By MS/MS 1 2 1 1.2465 1.0787 15.582 3 Median 1.0813 1.0302 NaN 1 0 Median 1.4044 1.2187 17.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17511000 7621100 9889500 10413000 4574200 5838500 7097900 3046900 4051000 0 0 0 0 0 0 0 0 0 0 0 0 8521 4436 8853 42175;42176;42177;42178 42190;42191;42192;42193 42190 4 FAEQTLR RQKQAADAEMEKHKKFAEQTLRQKAQVEQE AEMEKHKKFAEQTLRQKAQVEQELTTLRLQ K F A L R Q 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 863.45012 Q15149 Q15149 2310 2316 PLEC Plectin yes yes 2 0.0016107 126.24 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 1 1.18 1.163 16.214 7 Median 1.1634 1.1713 22.561 3 1 Median 1.18 0.95035 NaN 1 0 Median 0.9529 1.0547 NaN 1 0 Median 1.4989 1.3001 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4054 1.163 NaN 1 1 Median 29424000 12934000 16490000 5171400 2592400 2579000 13684000 5634900 8048700 2492400 1248400 1244000 328540 131570 196960 0 0 0 7747900 3326600 4421400 8522 2933 8854 42179;42180;42181;42182;42183;42184;42185 42194;42195;42196;42197;42198 42198 5 FAETQPK EVKLCEKMAQFDAKKFAETQPKKDTPRKEK MAQFDAKKFAETQPKKDTPRKEKGSREEKQ K F A P K K 1 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 7 0 819.41267 P26641 P26641 221 227 EEF1G Elongation factor 1-gamma yes yes 2 0.028199 50.966 By MS/MS By MS/MS By matching 1 1 1 1.0137 0.90397 16.774 3 Median NaN NaN NaN 0 0 Median 0.95524 0.8172 NaN 1 0 Median 1.1606 1.1339 NaN 1 0 Median 1.0137 0.90397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11132000 5195800 5936700 0 0 0 2756600 1376300 1380300 7027100 3186200 3840900 1348800 633280 715510 0 0 0 0 0 0 8523 2149 8855 42186;42187;42188 42199;42200;42201 42199 3 FAEVTQEVEVARPVDK NPKAEDYEENLQVMRFAEVTQEVEVARPVD AEVTQEVEVARPVDKAICGLTPGRRYRNQP R F A D K A 2 1 0 1 0 1 3 0 0 0 0 1 0 1 1 0 1 0 0 4 0 0 16 1 1815.9367 A0A2U3TZL8;H7BYN4;Q02241 A0A2U3TZL8 443 458 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 4.9839E-09 125.28 By MS/MS By MS/MS By MS/MS 2 2 1 0.88069 0.99769 19.358 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8788 0.99586 0.25861 2 1 Median 0.96888 0.92646 18.129 2 0 Median 1.2693 1.3959 NaN 1 0 Median NaN NaN NaN 0 0 Median 31183000 14540000 16644000 0 0 0 0 0 0 17355000 8531600 8823000 7059900 3573800 3486100 6769000 2434300 4334600 0 0 0 8524 407 8856 42189;42190;42191;42192;42193 42202;42203;42204;42205;42206;42207;42208 42206 7 FAEVYFAQSQQK EVPIKEEGDYVLVLKFAEVYFAQSQQKVFD VLKFAEVYFAQSQQKVFDVRLNGHVVVKDL K F A Q K V 2 0 0 0 0 3 1 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 12 0 1444.6987 F5H1S8;Q14165;H0YG07;F5GX14 F5H1S8 44 55 MLEC Malectin yes no 2 3.5906E-06 153.24 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1.4136 1.2596 16.469 7 Median 1.0791 0.97789 NaN 1 0 Median 1.5283 1.2831 NaN 1 0 Median 1.3093 1.2596 NaN 1 0 Median 1.4693 1.228 3.7359 2 0 Median 1.1908 1.283 32.217 2 0 Median NaN NaN NaN 0 0 Median 75505000 33927000 41577000 47970000 22584000 25386000 5933600 2216000 3717600 9830800 3831800 5999000 2691100 1014500 1676600 9079100 4280900 4798200 0 0 0 8525 1021 8857 42194;42195;42196;42197;42198;42199;42200 42209;42210;42211;42212;42213;42214;42215;42216 42212 8 FAEYGEIK TGVHEEATEEDIHDKFAEYGEIKNIHLNLD EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG K F A I K N 1 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 955.4651 Q9Y5S9;A0A0J9YW13 Q9Y5S9 93 100 RBM8A RNA-binding protein 8A yes no 2 0.0074119 67.981 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.2089 1.1102 17.082 6 Median NaN NaN NaN 0 0 Median 1.2669 1.0881 NaN 1 1 Median 1.5237 1.4283 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1275 1.2131 9.6913 2 0 Median 1.1976 0.97105 15.617 2 0 Median 36452000 15833000 20620000 0 0 0 3992700 1605500 2387200 14801000 6063500 8737300 0 0 0 8637900 3894900 4743000 9020700 4268600 4752100 8526 4469 8858 42201;42202;42203;42204;42205;42206;42207 42217;42218;42219;42220;42221;42222;42223;42224;42225;42226 42220 10 FAFDYATK CLKIVTRAKSQRIAKFAFDYATKKGRGKVT KSQRIAKFAFDYATKKGRGKVTAVHKANIM K F A T K K 2 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 1 0 1 0 0 0 8 0 961.45453 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 200 207 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0045034 81.191 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.4815 1.2603 18.901 6 Median 1.0541 0.97357 NaN 1 0 Median 1.252 1.0668 NaN 1 0 Median 1.5105 1.6753 NaN 1 0 Median 1.4531 1.2222 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5697 1.3131 1.4555 2 0 Median 38563000 16450000 22113000 18232000 8292600 9939400 15728000 6500800 9227700 2189100 754530 1434600 393860 168080 225780 0 0 0 2019800 734280 1285500 8527 96 8859 42208;42209;42210;42211;42212;42213 42227;42228;42229;42230 42227 4 FAFKEVEVQAK FLAPDKVDSKFFDPKFAFKEVEVQAKTVTE FDPKFAFKEVEVQAKTVTELVTKKKPKAEG K F A A K T 2 0 0 0 0 1 2 0 0 0 0 2 0 2 0 0 0 0 0 2 0 0 11 1 1294.6921 Q8IY81 Q8IY81 215 225 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 0.00061409 56.359 By matching By matching By MS/MS 1 1 2 1.2091 1.185 10.309 4 Median 1.2092 1.1924 NaN 1 0 Median 1.209 1.1776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1612 1.2667 16.54 2 0 Median NaN NaN NaN 0 0 Median 13929000 6813700 7115600 4798400 2360600 2437800 1181500 603700 577760 0 0 0 0 0 0 7949400 3849400 4100100 0 0 0 8528 3338 8860 42214;42215;42216;42217 42231;42232 42232 2 FAFQAEVNR LNASQIRELREKSEKFAFQAEVNRMMKLII REKSEKFAFQAEVNRMMKLIINSLYKNKEI K F A N R M 2 1 1 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 9 0 1080.5352 P14625;Q96GW1;A0A1W2PRR1 P14625 76 84 HSP90B1 Endoplasmin yes no 2 6.7355E-07 161.68 By MS/MS By MS/MS By matching By matching 4 4 1 1 1.3218 1.1484 19.691 10 Median 1.0512 1.0191 12.335 4 0 Median 1.3416 1.1484 9.6654 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8145 1.8511 NaN 1 0 Median 1.6097 1.3797 NaN 1 0 Median 541420000 237130000 304300000 321760000 148620000 173140000 208140000 84244000 123890000 0 0 0 0 0 0 10259000 3704800 6553800 1266600 558060 708560 8529 2006 8861 42218;42219;42220;42221;42222;42223;42224;42225;42226;42227 42233;42234;42235;42236;42237;42238;42239;42240;42241;42242;42243;42244;42245;42246 42233 13 FAFVEFADQNSVPR VKFVRMAGDETQPTRFAFVEFADQNSVPRA RFAFVEFADQNSVPRALAFNGVMFGDRPLK R F A P R A 2 1 1 1 0 1 1 0 0 0 0 0 0 3 1 1 0 0 0 2 0 0 14 0 1625.7838 Q8WXA9 Q8WXA9 108 121 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 2 1.895E-08 107.83 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.94608 0.90653 18.128 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86431 0.89847 18.193 2 0 Median 1.4404 1.2131 NaN 1 0 Median 0.85176 0.90653 NaN 1 1 Median 0.94608 0.79465 NaN 1 0 Median 25536000 14272000 11265000 0 0 0 0 0 0 23319000 13318000 10001000 127070 41658 85408 1845800 791890 1053900 244270 119510 124760 8530 3516 8862 42228;42229;42230;42231;42232 42247;42248;42249;42250;42251 42249 5 FAGDKGYLTK QMEHAMETMMFTFHKFAGDKGYLTKEDLRV FTFHKFAGDKGYLTKEDLRVLMEKEFPGFL K F A T K E 1 0 0 1 0 0 0 2 0 0 1 2 0 1 0 0 1 0 1 0 0 0 10 1 1098.571 P60903 P60903 19 28 S100A10 Protein S100-A10 yes yes 2 0.00022103 137.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 2 1 1.2701 1.1395 14.45 9 Median 1.2168 1.1395 NaN 1 0 Median 1.3231 1.0381 13.845 2 0 Median 1.2106 1.0351 26.236 2 0 Median 1.3003 1.0906 NaN 1 0 Median 1.2172 1.0301 17.721 2 0 Median 1.295 1.2968 NaN 1 0 Median 365380000 151860000 213520000 103870000 42510000 61355000 101210000 41387000 59826000 74841000 32576000 42266000 71227000 29117000 42110000 13570000 5990300 7579200 669190 283140 386040 8531 2531 8863 42233;42234;42235;42236;42237;42238;42239;42240;42241 42252;42253;42254;42255;42256;42257;42258;42259;42260;42261 42255 10 FAGGLHFSGPK KGPQVSSALNLDTSKFAGGLHFSGPKVEGG DTSKFAGGLHFSGPKVEGGVKGGQIGLQAP K F A P K V 1 0 0 0 0 0 0 3 1 0 1 1 0 2 1 1 0 0 0 0 0 0 11 0 1116.5716 Q09666 Q09666 5613 5623 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.0224E-05 98.044 By MS/MS By MS/MS By MS/MS 2 1 2 1.0212 0.96217 14.469 4 Median 0.91236 0.91511 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1431 1.2195 NaN 1 0 Median 1.0347 0.94527 9.5981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49622000 23953000 25669000 17267000 8633400 8633300 0 0 0 22715000 10439000 12276000 9640800 4880900 4759900 0 0 0 0 0 0 8532 2749 8864 42242;42243;42244;42245;42246 42262;42263;42264;42265;42266;42267 42263 6 FAGHNFR NQLMRIEEELGDEARFAGHNFRNPSVL___ EELGDEARFAGHNFRNPSVL__________ R F A F R N 1 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 847.40892 P09104;F5H0C8 P09104 423 429 ENO2 Gamma-enolase;Enolase yes no 2 0.016999 66.994 By matching By MS/MS By matching 1 1 1 1.3803 1.177 31.222 3 Plateau 0.7792 0.74492 NaN 1 0 Median 1.3803 1.177 NaN 1 0 Median 1.2949 1.353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1818300 876810 941450 94670 49553 45118 1522800 699310 823530 200760 127950 72803 0 0 0 0 0 0 0 0 0 8533 1911 8865 42247;42248;42249 42268 42268 1 FAGLHFFNPVPVMK LQITSIANATTRQDRFAGLHFFNPVPVMKL RFAGLHFFNPVPVMKLVEVIKTPMTSQKTF R F A M K L 1 0 1 0 0 0 0 1 1 0 1 1 1 3 2 0 0 0 0 2 0 0 14 0 1602.8381 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQV5;A0A1W2PQC2;A0A1W2PRT2 A0A0D9SFP2 170 183 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2;3 0.00072914 70.256 By MS/MS By matching By matching By matching By matching 4 2 2 3 1 1.0627 0.95612 22.072 12 Median 0.88401 0.83844 12.765 4 0 Median 1.198 1.01 14.052 2 0 Median 0.85986 0.83112 2.0385 2 0 Median 1.6154 1.3542 14.733 3 0 Median 1.0466 1.0334 NaN 1 0 Median NaN NaN NaN 0 0 Median 91246000 47242000 44003000 81953000 42954000 38999000 5774900 2574300 3200600 2649400 1335200 1314100 671690 284400 387290 196340 94397 101940 0 0 0 8534 269 8866;8867 42250;42251;42252;42253;42254;42255;42256;42257;42258;42259;42260;42261 42269;42270;42271;42272;42273;42274;42275 42275 132 7 FAGQMGIQLFETSAK DDPERKVVETEDAYKFAGQMGIQLFETSAK FAGQMGIQLFETSAKENVNVEEMFNCITEL K F A A K E 2 0 0 0 0 2 1 2 0 1 1 1 1 2 0 1 1 0 0 0 0 0 15 0 1626.8076 Q15286;F5H157 Q15286 138 152 RAB35 Ras-related protein Rab-35 yes no 2 0.00016426 76.655 By MS/MS By matching By matching By matching 3 2 1 1 0.96469 0.95912 69.995 7 Median 0.94864 0.88215 14.21 3 0 Median 0.48598 0.43214 132.7 2 0 Median 1.2764 1.2009 NaN 1 0 Median 1.5345 1.263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23548000 12231000 11317000 15747000 8442300 7304800 539860 314580 225280 6828000 3304300 3523800 432700 169640 263050 0 0 0 0 0 0 8535 2938 8868;8869 42262;42263;42264;42265;42266;42267;42268 42276;42277;42278;42279 42277 1624 4 FAGQNQHPSGATPTLNQLLTSPSPMMR LSKAAAGSAAGGFQRFAGQNQHPSGATPTL PTLNQLLTSPSPMMRSYGGSYPEYSSPSAP R F A M R S 2 1 2 0 0 3 0 2 1 0 3 0 2 1 4 3 3 0 0 0 0 0 27 0 2880.4011 A0A3F2YNW7;Q8NFD5 A0A3F2YNW7 488 514 ARID1B AT-rich interactive domain-containing protein 1B yes no 3 1.9868E-05 34.125 By MS/MS By matching 1 1 0.43293 0.42303 2.5598 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39128 0.43076 NaN 1 0 Median 0.47902 0.41544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5560400 3687600 1872800 0 0 0 0 0 0 5447700 3625100 1822600 112730 62530 50198 0 0 0 0 0 0 8536 449 8870 42269;42270 42280;42281 42280 2 FAGSAGWEGTESLK GPGSTKELIKSINEKFAGSAGWEGTESLKK KFAGSAGWEGTESLKKPEDKKQLGDFFGMS K F A L K K 2 0 0 0 0 0 2 3 0 0 1 1 0 1 0 2 1 1 0 0 0 0 14 0 1438.6729 Q13123;A0A0C4DGW5 Q13123 414 427 IK Protein Red yes no 2 6.5451E-08 101.93 By MS/MS By MS/MS 1 2 1.1789 1.0625 9.8201 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1789 1.1872 NaN 1 0 Median 1.183 1.0184 6.0019 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18134000 7667700 10467000 0 0 0 0 0 0 14428000 5939200 8489200 3705900 1728500 1977400 0 0 0 0 0 0 8537 2787 8871 42271;42272;42273 42282;42283;42284;42285;42286 42282 5 FAHNVVTTR IEVYSTKVNCKVTSRFAHNVVTTRAVNHAN CKVTSRFAHNVVTTRAVNHANTAKEVSFDV R F A T R A 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 2 0 0 9 0 1043.5512 CON__Q0V8M9 CON__Q0V8M9 58 66 yes yes 2 0.027065 51.346 By MS/MS 1 0.077894 0.065733 NaN 1 Median NaN NaN NaN 0 0 Median 0.077894 0.065733 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 984590 952070 32527 0 0 0 984590 952070 32527 0 0 0 0 0 0 0 0 0 0 0 0 + 8538 770 8872 42274 42287 42287 1 FAHTNVESLVNEYDDNGEGIILFR SEFLKAASNLRDNYRFAHTNVESLVNEYDD VNEYDDNGEGIILFRPSHLTNKFEDKTVAY R F A F R P 1 1 3 2 0 0 3 2 1 2 2 0 0 2 0 1 1 0 1 2 0 0 24 0 2751.314 P30101 P30101 184 207 PDIA3 Protein disulfide-isomerase A3 yes yes 3 0.018387 14.408 By MS/MS 1 0.90322 0.94483 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90322 0.94483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3126900 1721200 1405700 0 0 0 0 0 0 3126900 1721200 1405700 0 0 0 0 0 0 0 0 0 8539 2189 8873 42275 42288;42289 42288 2 FAHTNVESLVNEYDDNGEGIILFRPSHLTNK SEFLKAASNLRDNYRFAHTNVESLVNEYDD GEGIILFRPSHLTNKFEDKTVAYTEQKMTS R F A N K F 1 1 4 2 0 0 3 2 2 2 3 1 0 2 1 2 2 0 1 2 0 0 31 1 3528.7274 P30101 P30101 184 214 PDIA3 Protein disulfide-isomerase A3 yes yes 5 0.053484 9.5444 By MS/MS By matching 2 1 0.92931 0.84796 21.232 3 Median NaN NaN NaN 0 0 Median 1.016 0.93306 13.526 2 0 Median 0.60412 0.67193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11820000 5777800 6042000 0 0 0 10045000 4806600 5238300 1774900 971250 803650 0 0 0 0 0 0 0 0 0 8540 2189 8874 42276;42277;42278 42290 42290 1 FAIETVK SAPNRKSFTKKKSNKFAIETVKNLLESLKG FTKKKSNKFAIETVKNLLESLKGNRTENFT K F A V K N 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 806.4538 Q9NVV4 Q9NVV4 549 555 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.032878 62.717 By MS/MS 1 2.6855 2.7157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6855 2.7157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4216900 1221500 2995400 0 0 0 0 0 0 4216900 1221500 2995400 0 0 0 0 0 0 0 0 0 8541 4141 8875 42279 42291 42291 1 FAIGSQVSEHSIIK DQEMLSRIEKQLKRRFAIGSQVSEHSIIKD RFAIGSQVSEHSIIKDFTKQKYPEHAIHKV R F A I K D 1 0 0 0 0 1 1 1 1 3 0 1 0 1 0 3 0 0 0 1 0 0 14 0 1514.8093 P33992;B1AHB1 P33992 683 696 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 1.1657E-05 89.171 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 1.0059 0.98087 14.481 13 Median 1.0059 0.9235 12.605 3 0 Median 1.207 1.0586 20.223 4 1 Median 0.83574 0.87422 6.7795 4 0 Median 1.2561 1.0907 15.01 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85589000 41748000 43841000 23317000 11527000 11790000 10380000 4108500 6271300 48742000 24787000 23955000 3150500 1326100 1824400 0 0 0 0 0 0 8542 2224 8876 42280;42281;42282;42283;42284;42285;42286;42287;42288;42289;42290;42291;42292 42292;42293;42294;42295;42296;42297;42298;42299;42300;42301 42298 10 FAIGSQVSEHSIIKDFTK DQEMLSRIEKQLKRRFAIGSQVSEHSIIKD GSQVSEHSIIKDFTKQKYPEHAIHKVLQLM R F A T K Q 1 0 0 1 0 1 1 1 1 3 0 2 0 2 0 3 1 0 0 1 0 0 18 1 2006.0473 P33992;B1AHB1 P33992 683 700 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.0028577 40.844 By MS/MS 2 1.6814 1.7783 21.08 2 Median 1.6814 1.7783 21.08 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23615000 7930000 15685000 23615000 7930000 15685000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8543 2224 8877 42293;42294 42302;42303 42303 2 FAIQDISVEETSAK NAKMTLGMIWTIILRFAIQDISVEETSAKE RFAIQDISVEETSAKEGLLLWCQRKTAPYK R F A A K E 2 0 0 1 0 1 2 0 0 2 0 1 0 1 0 2 1 0 0 1 0 0 14 0 1536.7672 O43707;P12814;H9KV75;P35609;A0A494C1A0;G3V2W4;G3V2N5;Q08043;A0A494C033;G3V2X9;A0A494C166;A0A087WSZ2;G3V5M4;G3V2E8 O43707 153 166 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 2 9.3617E-08 112.83 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.89848 0.86419 14.853 6 Median 0.89273 0.83873 27.206 2 1 Median 0.98485 0.8314 NaN 1 0 Median 0.82585 0.89827 NaN 1 0 Median 0.87898 0.73699 NaN 1 0 Median 0.91842 0.94907 NaN 1 0 Median NaN NaN NaN 0 0 Median 123830000 58618000 65215000 88491000 41210000 47281000 16754000 8170200 8583600 14715000 7441500 7273800 1148700 594900 553750 2724200 1201800 1522400 0 0 0 8544 1585;1983 8878 42295;42296;42297;42298;42299;42300 42304;42305;42306;42307;42308;42309;42310;42311 42305 8 FAIVMMGR QSLLDIQEKEFEKFKFAIVMMGRHQYINED KEFEKFKFAIVMMGRHQYINEDEYEVNLKD K F A G R H 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 1 0 0 8 0 923.47211 Q93009 Q93009 1040 1047 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.0034718 94.163 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2888 1.1297 8.3496 4 Median 1.3181 1.305 NaN 1 0 Median 1.2601 1.0805 NaN 1 0 Median 1.0094 1.1103 NaN 1 0 Median 1.3233 1.1494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8977800 4194100 4783700 1958900 794340 1164500 1997500 873650 1123900 4664700 2367500 2297200 356640 158560 198080 0 0 0 0 0 0 8545 3574 8879 42301;42302;42303;42304 42312;42313;42314;42315 42315 4 FAIYETVR LSASLCRQMTYSLTRFAIYETVRDRVAKGS MTYSLTRFAIYETVRDRVAKGSQGPLPFHE R F A V R D 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 8 0 997.52328 B4DLN1;I3L1E8 B4DLN1 234 241 SLC25A10 no no 2 0.0027345 105.39 By MS/MS By MS/MS 2 1 1.2572 1.1752 57.285 3 Median 0.81771 0.79193 55.823 2 0 Median 1.922 1.6254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33047000 16777000 16271000 24249000 13594000 10655000 8798400 3182900 5615500 0 0 0 0 0 0 0 0 0 0 0 0 8546 598 8880 42305;42306;42307 42316;42317;42318;42319 42317 4 FAIYETVRDR LSASLCRQMTYSLTRFAIYETVRDRVAKGS YSLTRFAIYETVRDRVAKGSQGPLPFHEKV R F A D R V 1 2 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 10 1 1268.6513 B4DLN1;I3L1E8 B4DLN1 234 243 SLC25A10 no no 3 0.0037286 42.336 By matching By MS/MS 1 1 1.5267 1.4546 19.143 2 Median 1.1885 1.2704 NaN 1 0 Median 1.961 1.6654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5376400 2326200 3050200 3692100 1847900 1844200 1684300 478290 1206000 0 0 0 0 0 0 0 0 0 0 0 0 8547 598 8881 42308;42309 42320 42320 1 FAKPVYPGQTLQTEMWK FADNDVSRFKAIKARFAKPVYPGQTLQTEM KPVYPGQTLQTEMWKEGNRIHFQTKVQETG R F A W K E 1 0 0 0 0 2 1 1 0 0 1 2 1 1 2 0 2 1 1 1 0 0 17 1 2023.0237 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 563 579 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 7.6479E-06 59.728 By MS/MS By matching By MS/MS By MS/MS 3 1 3 2 1.1003 1.0491 15.032 9 Median 1.1003 1.0459 6.9557 3 0 Median 1.4752 1.4265 NaN 1 0 Median 0.93963 1.0421 6.1059 3 0 Median 1.3969 1.2847 6.2284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58792000 29080000 29712000 19389000 8899900 10489000 1682800 562110 1120700 35835000 18868000 16968000 1884700 750550 1134100 0 0 0 0 0 0 8548 393 8882 42310;42311;42312;42313;42314;42315;42316;42317;42318 42321;42322;42323;42324;42325;42326;42327;42328 42324 8 FALDFGLVPAPPAGTR GYSSMCGHAVLALGRFALDFGLVPAPPAGT ALDFGLVPAPPAGTREARVNIHCPCGLVTA R F A T R E 3 1 0 1 0 0 0 2 0 0 2 0 0 2 3 0 1 0 0 1 0 0 16 0 1627.8722 Q96EM0 Q96EM0 114 129 L3HYPDH Trans-3-hydroxy-L-proline dehydratase yes yes 2 1.3882E-06 90.653 By MS/MS By MS/MS 1 1 0.75914 0.70086 16.348 2 Median 0.79017 0.78675 NaN 1 0 Median 0.72934 0.62435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5531100 3263700 2267400 3580100 2044000 1536000 1951000 1219700 731380 0 0 0 0 0 0 0 0 0 0 0 0 8549 3638 8883 42319;42320 42329;42330;42331 42331 3 FALDMAR HEGTNFVVDQSQAVKFALDMARGMAFLHTL VDQSQAVKFALDMARGMAFLHTLEPLIPRH K F A A R G 2 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 822.40581 Q13418;A0A0A0MTH3 Q13418 297 303 ILK Integrin-linked protein kinase yes no 2 0.013187 76.847 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1.155 0.99854 16.838 6 Median 1.2361 1.2317 NaN 1 0 Median 1.4584 1.2724 NaN 1 0 Median 0.89766 0.88404 NaN 1 0 Median 1.155 0.99854 4.7327 2 0 Median NaN NaN NaN 0 0 Median 0.99065 0.84831 NaN 1 0 Median 24695000 12045000 12650000 2035700 869260 1166500 780940 372580 408360 13105000 6580900 6523700 7617300 3655900 3961400 0 0 0 1156500 566360 590150 8550 190 8884 42321;42322;42323;42324;42325;42326 42332;42333;42334;42335;42336 42332 5 FALEVAAK CVRVYTPVGKAEQGKFALEVAAKTLPFYKD GKAEQGKFALEVAAKTLPFYKDYFNVPYPL K F A A K T 3 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 847.48035 E9PLK3;P55786;A6NEC2 E9PLK3 276 283 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0067369 69.998 By MS/MS By MS/MS By matching 3 2 2 1.3535 1.2136 14.27 7 Median 1.0273 0.98917 13.489 3 1 Median 1.371 1.1992 1.959 2 0 Median NaN NaN NaN 0 0 Median 1.5327 1.336 13.599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39876000 19225000 20650000 28988000 14646000 14342000 9761000 4098300 5662700 0 0 0 1126600 481060 645490 0 0 0 0 0 0 8551 960 8885 42327;42328;42329;42330;42331;42332;42333 42337;42338;42339;42340;42341;42342 42337 6 FALGLSGGSLVSMLAR VAQRAACCLAGARARFALGLSGGSLVSMLA ALGLSGGSLVSMLARELPAAVAPAGPASLA R F A A R E 2 1 0 0 0 0 0 3 0 0 4 0 1 1 0 3 0 0 0 1 0 0 16 0 1577.8599 O95336;M0R261;M0R0U3 O95336 41 56 PGLS 6-phosphogluconolactonase yes no 2 0.04107 23.226 By MS/MS By matching 2 1 0.95538 0.89867 14.614 3 Median 0.90146 0.86729 5.0264 2 0 Median 1.2968 1.1087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1959300 931170 1028100 1476500 725310 751180 482780 205870 276910 0 0 0 0 0 0 0 0 0 0 0 0 8552 1764 8886 42334;42335;42336 42343 42343 1 FALGSVVAVTK EMVLPGFPDADSFVKFALGSVVAVTKASGG SFVKFALGSVVAVTKASGGLPQFGDEYDFY K F A T K A 2 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 3 0 0 11 0 1090.6386 Q01780;K7EJ37 Q01780 38 48 EXOSC10 Exosome component 10 yes no 2 0.0074467 43.282 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.4946 1.4284 9.9076 5 Median 1.4946 1.4828 NaN 1 0 Median 1.4829 1.3095 NaN 1 0 Median 1.204 1.3119 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6082 1.6631 NaN 1 1 Median 1.7037 1.4284 NaN 1 0 Median 21001000 8951000 12050000 2499700 920290 1579400 2330000 936990 1393000 12527000 5667700 6858900 0 0 0 3331400 1312900 2018500 313230 113160 200070 8553 2691 8887 42337;42338;42339;42340;42341 42344;42345;42346 42345 3 FALNSLLQR SSLASPSLPLASTGKFALNSLLQRQLMQSF LASTGKFALNSLLQRQLMQSFYSKAMQEAG K F A Q R Q 1 1 1 0 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1060.6029 A0A2R8Y852 A0A2R8Y852 489 497 no no 2 0.00078953 97.798 By matching By MS/MS By matching 1 2 5 1.0928 1.0394 31.093 8 Median 1.075 1.0399 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0928 1.1893 1.6367 2 0 Median 1.101 0.94789 34.499 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10669000 5071700 5597000 410400 209730 200670 0 0 0 6677100 3160600 3516400 3581200 1701300 1879900 0 0 0 0 0 0 8554 388 8888 42342;42343;42344;42345;42346;42347;42348;42349 42347;42348 42348 2 FALNYLQLLVHPNPPSVLFGADK KRMYEKEQLREYVEKFALNYLQLLVHPNPP LVHPNPPSVLFGADKDTEVAAPWTEETVKQ K F A D K D 2 0 2 1 0 1 0 1 1 0 5 1 0 2 3 1 0 0 1 2 0 0 23 0 2552.3791 Q92797;A0A087WUE9 Q92797 752 774 SYMPK Symplekin yes no 3 0.026906 13.057 By matching By matching By MS/MS 1 1 1 0.69977 0.63567 24.832 3 Median 0.95021 0.96552 NaN 1 0 Median 0.69977 0.63567 NaN 1 0 Median 0.57843 0.62104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1998300 1271700 726570 195250 103160 92091 106520 60675 45847 1696500 1107900 588630 0 0 0 0 0 0 0 0 0 8555 3558 8889 42350;42351;42352 42349 42349 1 FALPSPQHILGLPVGQHIYLSAR LIDREIISHDTRRFRFALPSPQHILGLPVG ILGLPVGQHIYLSARIDGNLVVRPYTPISS R F A A R I 2 1 0 0 0 2 0 2 2 2 4 0 0 1 3 2 0 0 1 1 0 0 23 0 2513.3907 P00387;B1AHF3 P00387 62 84 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 4 0.040595 18.251 By MS/MS 1 1.2238 1.0178 NaN 1 Median NaN NaN NaN 0 0 Median 1.2238 1.0178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10690000 4548500 6141200 0 0 0 10690000 4548500 6141200 0 0 0 0 0 0 0 0 0 0 0 0 8556 1816 8890 42353 42350 42350 0 FALPTAHHTLGLPVGK LLDKTTVSHNTKRFRFALPTAHHTLGLPVG ALPTAHHTLGLPVGKHIYLSTRIDGSLVIR R F A G K H 2 0 0 0 0 0 0 2 2 0 3 1 0 1 2 0 2 0 0 1 0 0 16 0 1657.9304 Q9UHQ9 Q9UHQ9 66 81 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 3 0.040715 22.154 By MS/MS 1 1.2806 1.1808 NaN 1 Median 1.2806 1.1808 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11979000 5602000 6377400 11979000 5602000 6377400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8557 4280 8891 42354 42351 42351 1 FALPYIR FESHAGHLGPQLFNKFALPYIRDVAKQVKA LGPQLFNKFALPYIRDVAKQVKARLREAGL K F A I R D 1 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 7 0 878.50142 A0A494C0Q8;A0A494C085;P06132;A0A494C0S8;A0A1B0GVN9;H0Y5R6;Q5T446 A0A494C0Q8 197 203 UROD Uroporphyrinogen decarboxylase yes no 2 0.016999 66.994 By MS/MS By matching 1 1 1.2346 1.1472 16.27 2 Median 1.0309 1.0225 NaN 1 0 Median 1.4786 1.2871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12314000 5395000 6919300 6516100 3155000 3361100 5798200 2240000 3558200 0 0 0 0 0 0 0 0 0 0 0 0 8558 458 8892 42355;42356 42352;42353;42354;42355 42354 4 FALTFGLDQLK RSSSTFSGIKELARRFALTFGLDQLKTREA LARRFALTFGLDQLKTREAIAMLHKDGIEF R F A L K T 1 0 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 11 0 1251.6863 Q8N3U4 Q8N3U4 955 965 STAG2 Cohesin subunit SA-2 yes yes 2 0.036759 29.087 By matching By matching By MS/MS 1 1 1 0.95836 1.0357 16.775 3 Median 0.95836 0.97283 NaN 1 0 Median 1.535 1.3354 NaN 1 0 Median 0.95501 1.0357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8060000 3713800 4346200 584360 339030 245330 2990800 1115200 1875600 4484900 2259600 2225300 0 0 0 0 0 0 0 0 0 8559 3369 8893 42357;42358;42359 42356 42356 1 FALTVVR ______________________________ ______________________________ R F A V R H 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 7 0 804.48577 Q9NQ88 Q9NQ88 4 10 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 2 0.0081656 86.512 By MS/MS By MS/MS 2 1 1.2627 1.1289 9.2568 3 Plateau 1.2548 1.1796 6.2144 2 0 Median 1.2113 1.0244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27675000 12033000 15642000 18453000 7625200 10828000 9222600 4407900 4814800 0 0 0 0 0 0 0 0 0 0 0 0 8560 4061 8894 42360;42361;42362 42357;42358;42359;42360;42361 42358 5 FAMEPEEFDSDTLR GEDVNAAILDESGKKFAMEPEEFDSDTLRE KFAMEPEEFDSDTLREFVTAFKKGKLKPVI K F A L R E 1 1 0 2 0 0 3 0 0 0 1 0 1 2 1 1 1 0 0 0 0 0 14 0 1685.7243 P13667;A0A499FI48 P13667 486 499 PDIA4 Protein disulfide-isomerase A4 yes no 2 4.7613E-06 94.616 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.88706 0.84849 21.583 8 Median 0.67853 0.68643 18.446 3 0 Median 1.1226 1.0142 6.5827 3 0 Median 0.8581 0.90627 NaN 1 0 Median 0.91701 0.7944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22186000 11190000 10996000 13865000 7124800 6740400 4578700 2166500 2412200 3571000 1818100 1752900 170850 80181 90673 0 0 0 0 0 0 8561 1993 8895;8896 42363;42364;42365;42366;42367;42368;42369;42370 42362;42363;42364;42365;42366;42367;42368 42364 780 7 FAMEQSFSADTGGGGR TYQLNIHDIKLLFLRFAMEQSFSADTGGGG AMEQSFSADTGGGGRESNIHLIPYIIHTVL R F A G R E 2 1 0 1 0 1 1 4 0 0 0 0 1 2 0 2 1 0 0 0 0 0 16 0 1616.6889 Q5T4S7;X6R960 Q5T4S7 4968 4983 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 1.1594E-08 152.85 By MS/MS By MS/MS 2 2 1.0282 0.93757 28.962 4 Median 1.1902 1.1758 8.3504 2 0 Median 0.84187 0.7279 12.13 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18684000 8611900 10072000 14833000 6718800 8113800 3851300 1893100 1958200 0 0 0 0 0 0 0 0 0 0 0 0 8562 3089 8897 42371;42372;42373;42374 42369;42370 42369 2 FAMVAPDVQIEDGKGTILISSEEGETEANNHKK KVTVLTLQDKIVKEKFAMVAPDVQIEDGKG ISSEEGETEANNHKKLSEFGIRNGSRLQAD K F A K K L 3 0 2 2 0 1 5 3 1 3 1 3 1 1 1 2 2 0 0 2 0 0 33 2 3556.7355 Q9UBT2;K7ESK7 Q9UBT2 473 505 UBA2 SUMO-activating enzyme subunit 2 yes no 5 0.0071122 20.592 By MS/MS 1 0.78743 0.76937 NaN 1 Median 0.78743 0.76937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5484500 2715100 2769400 5484500 2715100 2769400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8563 4247 8898 42375 42371 42371 1 FANDGSFLQQFLK GEITNAHNSSCISNKFANDGSFLQQFLKLQ NKFANDGSFLQQFLKLQKAQTSTDAPTSAP K F A L K L 1 0 1 1 0 2 0 1 0 0 2 1 0 3 0 1 0 0 0 0 0 0 13 0 1513.7565 Q8IWZ8;V9GZ08;B4DVK3 Q8IWZ8 83 95 SUGP1 SURP and G-patch domain-containing protein 1 yes no 2 9.5748E-07 99.802 By matching By MS/MS 1 1 1.0256 1.0549 2.573 2 Median 1.0348 1.0359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0165 1.0743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5135400 2479700 2655700 225990 97934 128060 0 0 0 4909400 2381800 2527600 0 0 0 0 0 0 0 0 0 8564 3330 8899 42376;42377 42372 42372 1 FANSLVGVQQQLQAFNTYR LEWIEQTIIILNNRKFANSLVGVQQQLQAF LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE K F A Y R T 2 1 2 0 0 4 0 1 0 0 2 0 0 2 0 1 1 0 1 2 0 0 19 0 2183.1124 Q01082;A0A087WUZ3;F8W6C1 Q01082 330 348 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.1707E-18 127.76 By MS/MS By matching By MS/MS By MS/MS 3 2 2 1 1.1824 1.0115 20.501 8 Median 1.5608 1.5429 13.874 3 1 Median 1.1824 0.99524 4.1605 2 0 Median 0.91123 0.99321 0.72415 2 0 Median 1.1139 0.98218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66835000 32200000 34635000 17693000 7765800 9926900 7401500 3524000 3877500 40970000 20530000 20440000 770630 380300 390330 0 0 0 0 0 0 8565 2681 8900 42378;42379;42380;42381;42382;42383;42384;42385 42373;42374;42375;42376;42377;42378;42379;42380;42381 42380 9 FANYIDK TRTNEKVELQELNDRFANYIDKVRFLEQQN ELQELNDRFANYIDKVRFLEQQNKILLAEL R F A D K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 869.42832 P08670;B0YJC4;A0A1B0GTT5 P08670 114 120 VIM Vimentin yes no 2 0.010611 81.784 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 4 1.0823 0.98477 19.299 13 Median 0.95965 0.88605 NaN 1 0 Median 1.5982 1.3611 20.233 2 0 Median 1.0921 1.0671 3.5908 2 1 Median 1.1285 1.0116 4.849 3 0 Plateau 1.0823 1.0345 NaN 1 0 Median 0.96953 0.7889 5.2829 4 0 Median 201070000 91175000 109900000 21005000 10311000 10694000 44520000 18268000 26252000 19280000 9033600 10247000 33133000 14628000 18504000 26865000 11753000 15111000 56270000 27180000 29090000 8566 1907 8901 42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398 42382;42383;42384;42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401 42390 20 FANYIDKVR TRTNEKVELQELNDRFANYIDKVRFLEQQN QELNDRFANYIDKVRFLEQQNKILLAELEQ R F A V R F 1 1 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 9 1 1124.5978 P08670;B0YJC4;A0A1B0GTT5 P08670 114 122 VIM Vimentin yes no 2 8.799E-10 170.66 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 3 2 1.1324 1.1182 22.748 10 Median 0.94771 0.97828 0.55112 2 0 Median 1.1848 1.1124 NaN 1 0 Median 1.4809 1.6453 NaN 1 0 Median 1.2649 1.2096 NaN 1 0 Median 1.1971 1.2112 22.444 3 1 Median 1.0194 0.9076 8.8969 2 0 Median 190340000 88003000 102340000 36527000 18104000 18424000 4133600 1829900 2303700 1467100 629510 837630 11107000 4680900 6425800 91572000 40486000 51086000 45539000 22273000 23265000 8567 1907 8902 42399;42400;42401;42402;42403;42404;42405;42406;42407;42408 42402;42403;42404;42405;42406;42407;42408;42409;42410 42404 9 FAPPLVIKEDELR DNGLLAKPTHGDIIRFAPPLVIKEDELRES IRFAPPLVIKEDELRESIEIINKTILSF__ R F A L R E 1 1 0 1 0 0 2 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 13 1 1525.8504 P04181 P04181 414 426 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3 0.0002139 68.034 By MS/MS By matching By MS/MS By matching 2 1 2 2 0.95626 1.0237 12.589 7 Median 0.9815 1.0193 19.804 2 0 Median 1.0977 1.0302 NaN 1 0 Median 0.92747 0.99443 12.431 2 0 Median 0.99375 0.91517 15.843 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25947000 12459000 13488000 8687600 4563100 4124500 3752200 1680300 2071900 8908600 3990200 4918400 4598700 2225000 2373600 0 0 0 0 0 0 8568 1846 8903 42409;42410;42411;42412;42413;42414;42415 42411;42412 42411 2 FAQALGLTEAVK ITKLRKQVEEIFNLKFAQALGLTEAVKVPY NLKFAQALGLTEAVKVPYPVFESNPEFLYV K F A V K V 3 0 0 0 0 1 1 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1246.6921 P78347;A0A494C1K3 P78347 583 594 GTF2I General transcription factor II-I yes no 2 9.8435E-05 91.658 By MS/MS By MS/MS By MS/MS 3 4 1 1.0516 1.0847 31.319 8 Median 1.2453 1.1994 35.912 3 1 Median NaN NaN NaN 0 0 Median 0.86878 0.91887 34.276 4 1 Median NaN NaN NaN 0 0 Median 1.1544 1.1925 NaN 1 1 Median NaN NaN NaN 0 0 Median 127500000 67071000 60433000 17261000 8063200 9198100 0 0 0 105280000 56561000 48721000 0 0 0 4960800 2447100 2513700 0 0 0 8569 2642 8904 42416;42417;42418;42419;42420;42421;42422;42423 42413;42414;42415;42416;42417;42418;42419 42415 7 FAQDFLIRPIGEK VEVDEETAAILKNSRFAQDFLIRPIGEKLP SRFAQDFLIRPIGEKLPTSGAVLLWS____ R F A E K L 1 1 0 1 0 1 1 1 0 2 1 1 0 2 1 0 0 0 0 0 0 0 13 1 1532.8351 A0A087WVD4;Q9HBK9 A0A087WVD4 315 327 AS3MT Arsenite methyltransferase yes no 2;3 3.5562E-11 118.4 By MS/MS By matching 2 1 0.87168 0.87493 12.61 2 Median 0.74695 0.80029 NaN 1 0 Median 1.0172 0.95652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12809000 6521400 6288100 7249600 4173400 3076200 5559900 2348000 3211900 0 0 0 0 0 0 0 0 0 0 0 0 8570 41 8905 42424;42425;42426 42420;42421;42422 42422 3 FAQDVSQDDLIR TLEELHQQVLKGRGKFAQDVSQDDLIRAIK RGKFAQDVSQDDLIRAIKKLKALGTGFGII K F A I R A 1 1 0 3 0 2 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 12 0 1405.6838 Q96H20 Q96H20 135 146 SNF8 Vacuolar-sorting protein SNF8 yes yes 2 5.4573E-06 161.63 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2022 1.0616 33.308 4 Median 1.9336 1.833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0397 0.99874 NaN 1 0 Median 1.022 0.84459 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.39 1.1283 NaN 1 0 Median 31218000 14762000 16456000 10391000 4725100 5666300 0 0 0 18000000 8788000 9211900 1178100 547530 630530 0 0 0 1648200 701190 947030 8571 3664 8906 42427;42428;42429;42430 42423;42424 42424 2 FAQHGTFEYEYSQR QKNPMYQKERETPPRFAQHGTFEYEYSQRW RFAQHGTFEYEYSQRWKSLDEMEKQQREQV R F A Q R W 1 1 0 0 0 2 2 1 1 0 0 0 0 2 0 1 1 0 2 0 0 0 14 0 1761.7747 P23246;H0Y9K7 P23246 480 493 SFPQ Splicing factor, proline- and glutamine-rich yes no 2;3 7.3845E-69 250.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 13 16 10 8 1.3459 1.2182 15.513 53 Median 1.6035 1.5344 2.1894 3 0 Median 1.2604 1.0949 4.5008 3 0 Median 1.0795 1.1695 17.332 13 0 Median 1.4866 1.2697 13.136 16 1 Median 1.1735 1.1854 17.536 10 0 Median 1.4613 1.1905 13.279 8 0 Median 3277400000 1490100000 1787200000 30001000 12153000 17847000 25751000 11107000 14644000 1779400000 847350000 932070000 808050000 333460000 474590000 538900000 247820000 291080000 95230000 38222000 57009000 8572 2107 8907 42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444;42445;42446;42447;42448;42449;42450;42451;42452;42453;42454;42455;42456;42457;42458;42459;42460;42461;42462;42463;42464;42465;42466;42467;42468;42469;42470;42471;42472;42473;42474;42475;42476;42477;42478;42479;42480;42481;42482;42483 42425;42426;42427;42428;42429;42430;42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443;42444;42445;42446;42447;42448;42449;42450;42451;42452;42453;42454;42455;42456;42457;42458;42459;42460;42461;42462;42463;42464;42465;42466;42467;42468;42469;42470;42471;42472;42473;42474;42475;42476;42477;42478;42479;42480;42481;42482;42483;42484;42485;42486;42487;42488;42489;42490;42491;42492;42493;42494;42495;42496;42497;42498;42499;42500;42501;42502;42503;42504;42505;42506;42507;42508;42509;42510;42511;42512;42513;42514;42515;42516;42517;42518;42519;42520;42521;42522;42523;42524;42525;42526;42527;42528;42529;42530;42531;42532;42533;42534;42535;42536;42537 42472 111 FAQIVQK CVDRFIDTTLAITSRFAQIVQKGGQ_____ TTLAITSRFAQIVQKGGQ____________ R F A Q K G 1 0 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 832.48069 G3XAN8;Q9Y5J9 G3XAN8 89 95 TIMM8B Mitochondrial import inner membrane translocase subunit Tim8 B yes no 2 0.011252 80.555 By MS/MS By matching By matching By matching 1 1 2 1 1.2313 1.2514 16.066 5 Median 1.1578 1.0677 NaN 1 0 Median 1.7357 1.4427 NaN 1 0 Median 1.1052 1.1188 15.849 2 0 Median NaN NaN NaN 0 0 Median 1.3163 1.3913 NaN 1 0 Median NaN NaN NaN 0 0 Median 8085600 3789100 4296600 2921000 1441000 1480100 926660 332580 594080 3700400 1799100 1901300 0 0 0 537540 216450 321100 0 0 0 8573 1127 8908 42484;42485;42486;42487;42488 42538;42539 42539 2 FAQLALER PEDSDMPDHDLEPPRFAQLALERVLQDWNA HDLEPPRFAQLALERVLQDWNALKSMIMFG R F A E R V 2 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 946.52362 O95071;E7EMW7 O95071 1324 1331 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0062885 71.877 By matching By MS/MS 1 2 1.1707 1.0551 7.0935 3 Median 1.0442 1.0379 NaN 1 0 Median 1.2128 1.1168 8.0478 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13510000 6121300 7389000 6680900 3057100 3623700 6829400 3064100 3765300 0 0 0 0 0 0 0 0 0 0 0 0 8574 1744 8909 42489;42490;42491 42540 42540 1 FAQLEFQLGDAER LECLPSKEHVDVIAKFAQLEFQLGDAERAK AKFAQLEFQLGDAERAKAIFENTLSTYPKR K F A E R A 2 1 0 1 0 2 2 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 13 0 1522.7416 Q14690;A0A3B3IUD7 Q14690 1767 1779 PDCD11 Protein RRP5 homolog yes no 2 4.3287E-07 108.67 By MS/MS 1 1.1394 1.2565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1394 1.2565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4831200 2245700 2585500 0 0 0 0 0 0 4831200 2245700 2585500 0 0 0 0 0 0 0 0 0 8575 448 8910 42492 42541;42542 42541 2 FAQMLEK LEHRGKLDGNQDLIRFAQMLEKVCVETVES DGNQDLIRFAQMLEKVCVETVESGAMTKDL R F A E K V 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 7 0 865.43677 P48735 P48735 394 400 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 0.009874 91.906 By MS/MS 1 1.9411 1.6738 NaN 1 Median NaN NaN NaN 0 0 Median 1.9411 1.6738 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2519900 918480 1601400 0 0 0 2519900 918480 1601400 0 0 0 0 0 0 0 0 0 0 0 0 8576 2367 8911 42493 42543 42543 1 FAQPGSFEYEYAMR IKNQQFHKEREQPPRFAQPGSFEYEYAMRW RFAQPGSFEYEYAMRWKALIEMEKQQQDQV R F A M R W 2 1 0 0 0 1 2 1 0 0 0 0 1 2 1 1 0 0 2 0 0 0 14 0 1694.7399 Q15233;H7C367;C9JYS8 Q15233 257 270 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 1.8144E-19 155.15 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 3 13 14 8 4 1.1738 1.0317 32.702 46 Median 1.2697 1.2475 13.565 4 0 Median 1.1266 0.99416 2.4998 3 0 Median 0.99975 0.99436 18.161 13 3 Median 1.2832 1.0973 10.713 14 0 Median 0.9152 0.93388 66.509 8 0 Median 1.2987 1.0874 3.8837 4 0 Median 2811300000 1449100000 1362200000 34682000 15133000 19548000 8032900 3808500 4224500 2463400000 1285200000 1178200000 109900000 48434000 61470000 187760000 93286000 94476000 7475800 3228300 4247500 8577 2935 8912;8913 42494;42495;42496;42497;42498;42499;42500;42501;42502;42503;42504;42505;42506;42507;42508;42509;42510;42511;42512;42513;42514;42515;42516;42517;42518;42519;42520;42521;42522;42523;42524;42525;42526;42527;42528;42529;42530;42531;42532;42533;42534;42535;42536;42537;42538;42539 42544;42545;42546;42547;42548;42549;42550;42551;42552;42553;42554;42555;42556;42557;42558;42559;42560;42561;42562;42563;42564;42565;42566;42567;42568;42569;42570;42571;42572;42573;42574;42575;42576;42577;42578;42579;42580;42581;42582 42556 1612 39 FAQPGTFEFEYASR QKTQQYHKEREQPPRFAQPGTFEFEYASRW RFAQPGTFEFEYASRWKALDEMEKQQREQV R F A S R W 2 1 0 0 0 1 2 1 0 0 0 0 0 3 1 1 1 0 1 0 0 0 14 0 1648.7522 Q8WXF1 Q8WXF1 265 278 PSPC1 Paraspeckle component 1 yes yes 2 4.4548E-08 133.89 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 3 2 3 2 0.70143 0.71133 14.643 12 Median 0.61351 0.58153 NaN 1 1 Median 0.68135 0.59083 NaN 1 0 Median 0.70012 0.70417 14.553 3 0 Median 0.97372 0.83974 7.1071 2 0 Median 0.66936 0.70051 6.2323 3 0 Median 0.94687 0.80158 13.351 2 0 Median 258240000 152060000 106190000 13996000 9390900 4604700 2724000 1578900 1145100 217240000 127340000 89895000 3627200 1781600 1845600 19150000 11202000 7947300 1512700 763410 749300 8578 3520 8914 42540;42541;42542;42543;42544;42545;42546;42547;42548;42549;42550;42551 42583;42584;42585;42586;42587;42588;42589;42590;42591 42586 9 FAQSAPGSPLSSQPVLITVQR PGAAQPKLAVIQEARFAQSAPGSPLSSQPV GSPLSSQPVLITVQRQLPQAIKPVTYTVAT R F A Q R Q 2 1 0 0 0 3 0 1 0 1 2 0 0 1 3 4 1 0 0 2 0 0 21 0 2182.1746 Q01167 Q01167 421 441 FOXK2 Forkhead box protein K2 yes yes 2;3 1.5094E-22 114.74 By MS/MS By matching 2 2 0.66128 0.61827 4.9622 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59233 0.60899 1.8314 2 0 Median 0.76342 0.64622 5.9427 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14971000 8838800 6131800 0 0 0 0 0 0 14194000 8398600 5795600 776380 440180 336190 0 0 0 0 0 0 8579 2684 8915 42552;42553;42554;42555 42592;42593;42594;42595 42594 4 FAQSTNLK GDRPYVCPFDGCNKKFAQSTNLKSHILTHA FDGCNKKFAQSTNLKSHILTHAKAKNNQ__ K F A L K S 1 0 1 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 8 0 907.47633 P25490;H0YJV7;O15391 P25490 394 401 YY1;YY2 Transcriptional repressor protein YY1;Transcription factor YY2 no no 2 0.031031 38.792 By matching By MS/MS 2 3 1.0572 1.0291 6.3394 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98268 1.0037 3.5333 2 0 Median 1.2563 1.0529 8.5993 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4425600 2004400 2421200 0 0 0 0 0 0 1871800 897370 974460 2553800 1107100 1446700 0 0 0 0 0 0 8580 2133;1544 8916 42556;42557;42558;42559;42560 42596 42596 1 FAQVLEK MAAVASPTGNCDLERFAQVLEKELPLYARP TGNCDLERFAQVLEKELPLYARPIFLRLLP R F A E K E 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 833.4647 Q6P1M0 Q6P1M0 565 571 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 2 0.022334 73.616 By MS/MS 1 1.552 1.3613 NaN 1 Median NaN NaN NaN 0 0 Median 1.552 1.3613 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7286400 2773700 4512700 0 0 0 7286400 2773700 4512700 0 0 0 0 0 0 0 0 0 0 0 0 8581 3152 8917 42561 42597 42597 1 FASDDEHDEHDENGATGPVKR GSGKGKVQFQGKKTKFASDDEHDEHDENGA HDEHDENGATGPVKRAREETDKEEPASKQQ K F A K R A 2 1 1 4 0 0 3 2 2 0 0 1 0 1 1 1 1 0 0 1 0 0 21 1 2324.9894 P05455 P05455 364 384 SSB Lupus La protein yes yes 4 0.016473 15.006 By matching By MS/MS By matching By matching 1 1 1 1 0.85709 0.8066 19.975 4 Median 0.88361 0.89912 NaN 1 0 Median 0.84905 0.77545 NaN 1 0 Median 0.56242 0.5715 NaN 1 0 Median 0.8652 0.83901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2449100 1267000 1182200 854490 426250 428240 942840 467420 475420 181080 88745 92334 470710 284550 186160 0 0 0 0 0 0 8582 1867 8918 42562;42563;42564;42565 42598 42598 1 FASEAEDKIR VYLTNSLELEHIEVKFASEAEDKIREDCCP HIEVKFASEAEDKIREDCCPGKPLNVFRIE K F A I R E 2 1 0 1 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 10 1 1164.5775 Q9P2J5 Q9P2J5 1040 1049 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0017149 87.308 By matching By MS/MS 1 1 1.0539 1.0397 37.507 2 Median 0.77166 0.79748 NaN 1 0 Median 1.4393 1.3555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4185700 1938200 2247500 680090 403910 276180 3505600 1534300 1971300 0 0 0 0 0 0 0 0 0 0 0 0 8583 4224 8919 42566;42567 42599 42599 1 FASEIAGVDDLGTTGR KTIMTRCIQCTRCIRFASEIAGVDDLGTTG ASEIAGVDDLGTTGRGNDMQVGTYIEKMFM R F A G R G 2 1 0 2 0 0 1 3 0 1 1 0 0 1 0 1 2 0 0 1 0 0 16 0 1607.7791 P28331;B4DJ81 P28331 185 200 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 2.5976E-09 156.69 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.1487 1.0126 14.772 5 Median 0.93159 0.88109 NaN 1 0 Median 1.474 1.2958 NaN 1 0 Median 0.91353 0.93666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2029 1.0368 3.3401 2 0 Median 30660000 15446000 15214000 21656000 10663000 10993000 1477900 551270 926660 7210500 4099800 3110700 0 0 0 0 0 0 315050 132130 182910 8584 2165 8920 42568;42569;42570;42571;42572 42600;42601;42602 42601 3 FASENDLPEWK EDEEELFKMRAKLFRFASENDLPEWKERGT KLFRFASENDLPEWKERGTGDVKLLKHKEK R F A W K E 1 0 1 1 0 0 2 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 11 0 1334.6143 F6WQW2;P43487;C9JXG8;C9JJ34;C9JDM3;C9JGV6;C9JIC6 F6WQW2 135 145 RANBP1 Ran-specific GTPase-activating protein yes no 2 0.00014133 117.31 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1 1.0006 0.86796 13.311 7 Median 0.96787 0.89229 NaN 1 0 Median 1.0561 0.88739 6.4411 2 0 Median 0.92455 0.86796 NaN 1 0 Median 1.0636 0.88147 NaN 1 0 Median 0.60709 0.62381 NaN 1 0 Median 1.0403 0.86121 NaN 1 0 Median 254360000 129100000 125250000 86815000 44689000 42126000 23209000 10921000 12289000 134380000 68517000 65865000 4578100 2222200 2356000 1348400 815000 533410 4023400 1937500 2085800 8585 1052 8921 42573;42574;42575;42576;42577;42578;42579 42603;42604;42605;42606;42607;42608 42604 6 FASENDLPEWKER EDEEELFKMRAKLFRFASENDLPEWKERGT FRFASENDLPEWKERGTGDVKLLKHKEKGA R F A E R G 1 1 1 1 0 0 3 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 13 1 1619.758 F6WQW2;P43487;C9JXG8;C9JJ34;C9JDM3;C9JGV6;C9JIC6 F6WQW2 135 147 RANBP1 Ran-specific GTPase-activating protein yes no 2;3 1.4062E-09 176.95 By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 0.80466 0.79855 46.47 7 Median 0.90062 0.93959 34.47 2 0 Median 1.5134 1.3996 NaN 1 0 Median 0.7465 0.74136 10.508 2 0 Median 1.1365 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39844 0.34026 NaN 1 0 Median 131410000 63427000 67981000 46215000 20669000 25546000 8865600 3367800 5497800 69701000 36261000 33440000 5971600 2743100 3228500 0 0 0 655280 386050 269220 8586 1052 8922 42580;42581;42582;42583;42584;42585;42586 42609;42610;42611;42612 42611 4 FASFIDK VRTQEKEQIKTLNNKFASFIDKVRFLEQQN QIKTLNNKFASFIDKVRFLEQQNKMLETKW K F A D K V 1 0 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 P05787;CON__P05787;F8VUG2;F8W1U3;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;F8VS61;H0YHD9;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__P19013;P19013;CON__Q7Z794;Q7Z794;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q5XKE5;Q5XKE5;CON__Q9H552 P05787 102 108 KRT8;KRT7;KRT84;KRT77;KRT72;KRT6A;KRT5;KRT6C;KRT2;KRT4;KRT79 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 4;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 79 no no 2 0.0022499 114.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 10 13 6 8 0.089739 0.081613 163.09 52 Median 0.25778 0.24644 129.72 8 6 Median 0.064669 0.054332 182.64 8 5 Median 0.062299 0.067873 144.66 10 5 Median 0.021057 0.018045 173.52 12 7 Median 0.20629 0.21137 154.15 6 0 Median 0.43616 0.35303 123.88 8 0 Median 1360800000 929410000 431360000 167320000 119600000 47722000 180780000 138400000 42380000 344580000 209110000 135470000 240340000 182570000 57767000 202260000 123400000 78859000 225490000 156330000 69155000 + 8587 750;764;765;757;741;748;766;792;786;761;789;771 8923 42587;42588;42589;42590;42591;42592;42593;42594;42595;42596;42597;42598;42599;42600;42601;42602;42603;42604;42605;42606;42607;42608;42609;42610;42611;42612;42613;42614;42615;42616;42617;42618;42619;42620;42621;42622;42623;42624;42625;42626;42627;42628;42629;42630;42631;42632;42633;42634;42635;42636;42637;42638;42639 42613;42614;42615;42616;42617;42618;42619;42620;42621;42622;42623;42624;42625;42626;42627;42628;42629;42630;42631;42632;42633;42634;42635;42636;42637;42638;42639;42640;42641;42642;42643;42644;42645;42646;42647;42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658;42659;42660;42661;42662;42663;42664;42665;42666;42667;42668;42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680;42681;42682;42683;42684;42685;42686;42687;42688;42689;42690;42691 42638 79 FASFIDKVR VRTQEKEQIKTLNNKFASFIDKVRFLEQQN KTLNNKFASFIDKVRFLEQQNKMLETKWSL K F A V R F 1 1 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 1 0 0 9 1 1081.592 P05787;CON__P05787;F8VUG2;F8W1U3;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__Q7Z794;Q7Z794;CON__Q14CN4-1;CON__Q6IME9;Q14CN4;CON__Q5XKE5;Q5XKE5 P05787 102 110 KRT8;KRT7;KRT84;KRT6A;KRT5;KRT6C;KRT2;KRT77;KRT72;KRT79 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 79 no no 2 1.5558E-25 174.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 2 4 6 5 0.3367 0.30616 160.9 28 Median 0.10131 0.10031 140.75 7 6 Median 0.13357 0.12432 171.88 5 4 Median 0.090122 0.1029 349.56 2 0 Median 0.3186 0.2771 143.62 3 2 Median 0.4025 0.44155 80.078 6 2 Median 0.95498 0.85772 188.39 5 1 Median 827930000 579270000 248670000 205460000 177640000 27820000 27033000 17874000 9158900 87974000 84282000 3692000 37969000 24578000 13391000 369450000 221600000 147860000 100040000 53294000 46748000 + 8588 750;764;765;757;741;748;766;786;789;771 8924 42640;42641;42642;42643;42644;42645;42646;42647;42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658;42659;42660;42661;42662;42663;42664;42665;42666;42667;42668;42669 42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702;42703;42704;42705;42706;42707;42708;42709;42710;42711;42712;42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727 42695 36 FASFNAYENHLK ESKGSATYCTVCSKKFASFNAYENHLKSRR SKKFASFNAYENHLKSRRHVELEKKAVQAV K F A L K S 2 0 2 0 0 0 1 0 1 0 1 1 0 2 0 1 0 0 1 0 0 0 12 0 1439.6834 Q969S3 Q969S3 76 87 ZNF622 Zinc finger protein 622 yes yes 3 0.0046989 34 By matching By MS/MS By MS/MS 1 1 1 1.5981 1.4071 29.31 3 Median NaN NaN NaN 0 0 Median 1.5981 1.4071 NaN 1 0 Median 2.2013 2.2501 NaN 1 0 Median 1.527 1.3129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4833800 1473200 3360600 0 0 0 767280 307390 459890 3273800 879910 2393900 792750 285930 506820 0 0 0 0 0 0 8589 3586 8925 42670;42671;42672 42728;42729 42728 2 FASFPDYLVIQIK STALQAKSVAVKTTRFASFPDYLVIQIKKF TRFASFPDYLVIQIKKFTFGLDWVPKKLDV R F A I K K 1 0 0 1 0 1 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 13 0 1539.8337 P45974 P45974 562 574 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 1.9031E-05 94.692 By matching By MS/MS 2 3 1.0372 0.97043 60.492 5 Median 0.984 0.99289 8.2495 2 0 Median 1.0686 0.97043 79.977 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11714000 5750800 5963500 2155800 1151700 1004100 9558500 4599100 4959400 0 0 0 0 0 0 0 0 0 0 0 0 8590 2332 8926 42673;42674;42675;42676;42677 42730;42731 42731 2 FASTVFPSDHIPSR YLIKPEVQVRQVAVKFASTVFPSDHIPSRY KFASTVFPSDHIPSRYLLLLAAGDPREEVH K F A S R Y 1 1 0 1 0 0 0 0 1 1 0 0 0 2 2 3 1 0 0 1 0 0 14 0 1559.7732 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 503 516 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 5.7505E-05 77.527 By MS/MS By MS/MS By matching 1 2 1 0.85695 0.76706 19.818 4 Median 0.7832 0.73484 NaN 1 0 Median 0.97663 0.84905 8.2918 2 0 Median 0.50841 0.56468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45136000 23362000 21775000 35559000 18013000 17546000 7267200 3615000 3652200 2309800 1733800 576050 0 0 0 0 0 0 0 0 0 8591 3116 8927 42678;42679;42680;42681 42732;42733;42734 42733 3 FASWALESDNNTALLLSK WTMTKIQKHQEHILRFASWALESDNNTALL WALESDNNTALLLSKKLIYFQLHRALKMIV R F A S K K 3 0 2 1 0 0 1 0 0 0 4 1 0 1 0 3 1 1 0 0 0 0 18 0 1979 Q13263 Q13263 348 365 TRIM28 Transcription intermediary factor 1-beta yes yes 2 4.4933E-06 77.078 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 0.9712 1.0301 16.493 9 Median 0.97632 0.94908 11.585 2 0 Median 0.95281 0.83262 29.568 3 0 Median 0.97039 1.0467 2.0613 2 0 Median 1.1124 0.9731 NaN 1 0 Median 1.0966 1.134 NaN 1 0 Median NaN NaN NaN 0 0 Median 40589000 20410000 20179000 13432000 6553000 6878800 12541000 6617000 5924100 10426000 5248500 5177200 139430 63548 75877 4051100 1928200 2122800 0 0 0 8592 2802 8928 42682;42683;42684;42685;42686;42687;42688;42689;42690 42735;42736;42737;42738;42739;42740;42741 42736 7 FASWALESDNNTALLLSKK WTMTKIQKHQEHILRFASWALESDNNTALL ALESDNNTALLLSKKLIYFQLHRALKMIVD R F A K K L 3 0 2 1 0 0 1 0 0 0 4 2 0 1 0 3 1 1 0 0 0 0 19 1 2107.095 Q13263 Q13263 348 366 TRIM28 Transcription intermediary factor 1-beta yes yes 3 0.02678 22.435 By MS/MS 1 1.0877 1.1461 NaN 1 Median 1.0877 1.1461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007000 1900400 2106600 4007000 1900400 2106600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8593 2802 8929 42691 42742 42742 1 FASYLTFSPSEVK DMLRVEQVKIHAGPKFASYLTFSPSEVKSL PKFASYLTFSPSEVKSLRTEYGDLELCIEV K F A V K S 1 0 0 0 0 0 1 0 0 0 1 1 0 2 1 3 1 0 1 1 0 0 13 0 1474.7344 P54886 P54886 650 662 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 4.4682E-07 108.43 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 1 5 0.92706 0.82588 42.553 11 Median 0.92706 0.82588 NaN 1 0 Median 0.30554 0.31828 NaN 1 0 Median 1.1499 1.1073 5.8703 2 0 Median 1.0222 0.88589 NaN 1 0 Median 0.69207 0.7142 NaN 1 0 Median 0.90302 0.72422 42.331 5 0 Median 105860000 51102000 54757000 23393000 11877000 11517000 1167100 722900 444200 69422000 31707000 37715000 3985300 2005600 1979600 5264500 3318400 1946100 2626300 1470900 1155300 8594 2488 8930 42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702 42743;42744;42745;42746;42747;42748;42749;42750;42751;42752;42753 42748 11 FATASADGQIYIYDGK SRFVNCVRFSPDGNRFATASADGQIYIYDG ATASADGQIYIYDGKTGEKVCALGGSKAHD R F A G K T 3 0 0 2 0 1 0 2 0 2 0 1 0 1 0 1 1 0 2 0 0 0 16 0 1718.8152 O75083;D6RD66 O75083 204 219 WDR1 WD repeat-containing protein 1 yes no 2 9.4288E-05 72.652 By MS/MS By matching By MS/MS 1 1 1 1.0491 0.998 13.761 3 Median 1.0491 0.99339 NaN 1 0 Median 1.4581 1.2636 NaN 1 0 Median 1.0082 0.998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16605000 8202200 8402700 8390500 3996800 4393700 1147300 499160 648100 7067100 3706200 3360800 0 0 0 0 0 0 0 0 0 8595 1643 8931 42703;42704;42705 42754;42755;42756;42757;42758 42754 5 FATEAAITILR AGVFEPTIVKVKSLKFATEAAITILRIDDL KSLKFATEAAITILRIDDLIKLHPESKDDK K F A L R I 3 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1204.6816 P17987;E7EQR6;F5H282 P17987 516 526 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00013836 116.3 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.2395 1.148 8.4737 7 Median 1.2395 1.164 7.6405 3 0 Plateau 1.2475 1.0973 6.3925 2 0 Median 1.2953 1.2944 NaN 1 0 Median 1.3657 1.1892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125180000 56772000 68408000 55578000 25406000 30173000 56872000 25932000 30940000 12245000 5216100 7028700 484410 217580 266830 0 0 0 0 0 0 8596 2051 8932 42706;42707;42708;42709;42710;42711;42712 42759;42760;42761;42762;42763;42764 42763 5 FATHAAALSVR ELDDTPMRGRQLRVRFATHAAALSVRNLSP LRVRFATHAAALSVRNLSPYVSNELLEEAF R F A V R N 4 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1142.6196 P23246 P23246 366 376 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.00011882 135.55 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 4 4 1.345 1.1651 12.102 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0068 1.0624 15.258 4 0 Median 1.4556 1.2508 10.308 6 1 Median 1.1068 1.1023 13.291 4 0 Median 1.4138 1.1787 5.6786 4 0 Median 626840000 277130000 349710000 0 0 0 0 0 0 170770000 82303000 88464000 117570000 47443000 70131000 230460000 104380000 126070000 108040000 42997000 65047000 8597 2107 8933 42713;42714;42715;42716;42717;42718;42719;42720;42721;42722;42723;42724;42725;42726;42727;42728;42729;42730 42765;42766;42767;42768;42769;42770;42771;42772;42773;42774;42775;42776;42777;42778;42779;42780;42781;42782;42783;42784;42785;42786;42787;42788;42789;42790;42791;42792;42793;42794;42795 42781 31 FATHGAALTVK ELDGTILKSRPLRIRFATHGAALTVKNLSP LRIRFATHGAALTVKNLSPVVSNELLEQAF R F A V K N 3 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1114.6135 Q8WXF1;X6RDA4 Q8WXF1 151 161 PSPC1 Paraspeckle component 1 yes no 2 0.00014177 109.29 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1.1425 0.99532 16.588 8 Median NaN NaN NaN 0 0 Median 1.1813 1.0139 34.457 2 0 Median 0.82424 0.82919 1.9468 2 0 Median 1.1676 1.0427 5.738 3 1 Median NaN NaN NaN 0 0 Median 1.2848 1.0588 NaN 1 0 Median 39496000 19328000 20168000 0 0 0 10046000 4532600 5513200 16415000 9122400 7292500 9254800 4033600 5221300 0 0 0 3780500 1639000 2141400 8598 3520 8934 42731;42732;42733;42734;42735;42736;42737;42738 42796;42797;42798;42799;42800;42801;42802;42803;42804;42805;42806 42797 11 FATNEAIQR KLVLIGSNHSLPFLKFATNEAIQRTEAYEY SLPFLKFATNEAIQRTEAYEYAQSLGAETC K F A Q R T 2 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1048.5302 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1774 1782 SEC16A Protein transport protein Sec16A yes no 2 0.020027 75.738 By MS/MS By MS/MS 1 1 0.8094 0.74478 42.877 2 Median 0.54897 0.54999 NaN 1 1 Median 1.1934 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6697700 3093500 3604200 2044900 1154900 890000 4652900 1938700 2714200 0 0 0 0 0 0 0 0 0 0 0 0 8599 1513 8935 42739;42740 42807;42808 42807 1 FATSLVDNSVPLLR FIGECKILSPPDISRFATSLVDNSVPLLRA RFATSLVDNSVPLLRAGPSDSNLDGTVTEM R F A L R A 1 1 1 1 0 0 0 0 0 0 3 0 0 1 1 2 1 0 0 2 0 0 14 0 1530.8406 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4467 4480 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 8.645E-06 91.549 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0257 0.99312 22.925 4 Median 0.74133 0.7376 NaN 1 0 Median 1.2705 1.0588 NaN 1 0 Median 0.82806 0.93153 NaN 1 0 Median 1.4682 1.2729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14345000 7268400 7076100 6479300 3736100 2743200 6396200 2735800 3660300 1375000 756070 618920 94138 40475 53663 0 0 0 0 0 0 8600 189 8936 42741;42742;42743;42744 42809;42810;42811;42812;42813 42810 5 FATVEVTDKPVDEALR KEEVAYEERACEGGKFATVEVTDKPVDEAL ATVEVTDKPVDEALREAMPKVAKYAGGTND K F A L R E 2 1 0 2 0 0 2 0 0 0 1 1 0 1 1 0 2 0 0 3 0 0 16 1 1788.9258 Q9NRV9;A0A3B3IRV5;F5GWX2 Q9NRV9 41 56 HEBP1 Heme-binding protein 1 yes no 2;3 5.6243E-09 151.98 By MS/MS By MS/MS 2 2 0.85085 0.8393 20.127 4 Median 0.78098 0.81211 7.6809 2 0 Median 1.0734 0.99584 27.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118380000 61060000 57318000 93910000 50217000 43692000 24469000 10843000 13626000 0 0 0 0 0 0 0 0 0 0 0 0 8601 4088 8937 42745;42746;42747;42748 42814;42815;42816;42817;42818;42819 42816 6 FAVALDSEQNNIHVK VTVRHQAVTRKKDNRFAVALDSEQNNIHVK FAVALDSEQNNIHVKDIVKVIDGPHSGREG R F A V K D 2 0 2 1 0 1 1 0 1 1 1 1 0 1 0 1 0 0 0 2 0 0 15 0 1683.858 O00267 O00267 583 597 SUPT5H Transcription elongation factor SPT5 yes yes 2;3 1.0227E-07 129.16 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 3 2 1 1.0508 0.99459 16.33 10 Median 1.1302 1.0981 7.9318 2 0 Median 1.1841 1.0375 8.9575 2 0 Median 0.80058 0.85208 17.061 3 0 Median 1.2188 1.0542 23.671 2 0 Median 0.8467 0.87556 NaN 1 0 Median NaN NaN NaN 0 0 Median 82520000 41878000 40641000 15323000 6655900 8667000 5094100 2311300 2782800 53584000 28704000 24880000 4976000 2385500 2590500 3542500 1821600 1720900 0 0 0 8602 1452 8938 42749;42750;42751;42752;42753;42754;42755;42756;42757;42758 42820;42821;42822;42823;42824;42825 42823 6 FAVALLDDSVR SCCLRVFAWHPHTNKFAVALLDDSVRVYNA HTNKFAVALLDDSVRVYNASSTIVPSLKHR K F A V R V 2 1 0 2 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 2 0 0 11 0 1204.6452 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 166 176 AAAS Aladin yes no 2 0.00019975 96.331 By matching By matching By MS/MS By matching 1 1 1 1 1.0514 0.9756 50.25 4 Median 1.9793 1.8665 NaN 1 0 Median 0.4585 0.5499 NaN 1 0 Median 1.0501 1.0446 NaN 1 0 Median 1.0527 0.9112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21925000 10253000 11672000 572880 211470 361410 1574100 844880 729230 18986000 8844800 10141000 791860 351630 440220 0 0 0 0 0 0 8603 4082 8939 42759;42760;42761;42762 42826;42827 42827 2 FAVEEIIQK SMEDIPGRGHKYHLKFAVEEIIQKQVKVNC HKYHLKFAVEEIIQKQVKVNCTAEVLYPST K F A Q K Q 1 0 0 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 9 0 1075.5914 Q9BS40 Q9BS40 56 64 LXN Latexin yes yes 2 0.011828 70.919 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8604 3810 8940 42763 42828 42828 1 FAVFGLGNK YDWLQETDVDLSGVKFAVFGLGNKTYEHFN DLSGVKFAVFGLGNKTYEHFNAMGKYVDKR K F A N K T 1 0 1 0 0 0 0 2 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 0 951.5178 P16435 P16435 168 176 POR NADPH--cytochrome P450 reductase yes yes 2 0.0028478 69.176 By MS/MS By matching By matching 2 2 1 1.3111 1.1413 9.7241 5 Median 1.1011 1.038 13.412 2 0 Median 1.3627 1.1742 5.9513 2 0 Median NaN NaN NaN 0 0 Median 1.3111 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14402000 6295600 8106800 8732200 3991000 4741200 5627000 2283300 3343700 0 0 0 43268 21259 22009 0 0 0 0 0 0 8605 2030 8941 42764;42765;42766;42767;42768 42829;42830 42829 2 FAVGIVIGR SRIGGNEGIDVPIPRFAVGIVIGRNGEMIK DVPIPRFAVGIVIGRNGEMIKKIQNDAGVR R F A G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 2 0 0 9 0 930.56509 Q96AE4;E9PEB5;Q96I24 Q96AE4 285 293 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 no no 2 0.00053206 107.43 By MS/MS By matching By MS/MS By MS/MS 1 1 4 4 1.4562 1.3023 33.41 10 Median 1.4268 1.3805 NaN 1 0 Median 1.3706 1.2453 NaN 1 0 Median 1.4357 1.452 54.681 4 1 Median 1.5237 1.2998 16.013 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45377000 17104000 28273000 3680600 1397000 2283600 806610 362410 444210 37100000 13812000 23288000 3789400 1531600 2257800 0 0 0 0 0 0 8606 3599;3673 8942 42769;42770;42771;42772;42773;42774;42775;42776;42777;42778 42831;42832;42833;42834;42835;42836;42837;42838;42839 42836 9 FAVHGDAR AASPELSALEEAFRRFAVHGDARATGREMH LEEAFRRFAVHGDARATGREMHGKNWSKLC R F A A R A 2 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 871.43005 O94811 O94811 58 65 TPPP Tubulin polymerization-promoting protein yes yes 2 0.049624 34.824 By MS/MS 1 0.94695 0.8845 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94695 0.8845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 655560 361440 294120 0 0 0 0 0 0 655560 361440 294120 0 0 0 0 0 0 0 0 0 8607 1726 8943 42779 42840 42840 1 FAVLHGEAPR KETIIAFAWEPNGSKFAVLHGEAPRISVSF PNGSKFAVLHGEAPRISVSFYHVKNNGKIE K F A P R I 2 1 0 0 0 0 1 1 1 0 1 0 0 1 1 0 0 0 0 1 0 0 10 0 1095.5825 P55884 P55884 577 586 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.00069545 110.41 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.85588 0.86348 14.664 4 Median 0.84682 0.81886 NaN 1 0 Median 0.81356 0.67383 NaN 1 0 Median 0.86504 0.92767 NaN 1 0 Median 1.0681 0.91054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34678000 17912000 16766000 4247400 2398000 1849400 27875000 14223000 13653000 1370700 740110 630570 1184900 551280 633670 0 0 0 0 0 0 8608 2504 8944 42780;42781;42782;42783;42784 42841;42842;42843;42844;42845;42846 42844 6 FAVSQMSALLDSAHLLASSTQR AQMLDVAIRVKAIRKFAVSQMSALLDSAHL ALLDSAHLLASSTQRNGICEVLYAAAWICG K F A Q R N 4 1 0 1 0 2 0 0 1 0 4 0 1 1 0 5 1 0 0 1 0 0 22 0 2332.1845 O14617;A0A2R8Y611;A0A2R8Y4J3 O14617 454 475 AP3D1 AP-3 complex subunit delta-1 yes no 3 0.00020976 28.202 By MS/MS By MS/MS 1 2 1.1118 1.0336 50.585 3 Plateau 1.1206 1.1158 NaN 1 0 Median 0.72887 0.63161 54.396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3206800 1532100 1674800 1647600 795730 851890 1559200 736330 822880 0 0 0 0 0 0 0 0 0 0 0 0 8609 1485 8945 42785;42786;42787 42847;42848;42849;42850 42850 4 FAVYLPPK KVFEHDSVELNCKMKFAVYLPPKAETGKCP ELNCKMKFAVYLPPKAETGKCPALYWLSGL K F A P K A 1 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 8 0 933.53239 P10768;X6RA14 P10768 32 39 ESD S-formylglutathione hydrolase yes no 2 0.0068836 69.383 By MS/MS By matching 1 1 0.93201 0.81342 5.8062 2 Median 0.86019 0.7807 NaN 1 0 Median 1.0098 0.84751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33961000 16884000 17077000 28423000 14029000 14394000 5538000 2854800 2683200 0 0 0 0 0 0 0 0 0 0 0 0 8610 1946 8946 42788;42789 42851;42852;42853 42851 3 FAYTGTEMR CIGELNDDTSRSDSKFAYTGTEMRTVAEKV SRSDSKFAYTGTEMRTVAEKVDAVRIVHIH K F A M R T 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 2 0 1 0 0 0 9 0 1074.4804 A0A087WZR3;H9KVA9;A0A0D9SF50;P46736 A0A087WZR3 53 61 BRCC3 Lys-63-specific deubiquitinase BRCC36 yes no 2 0.0012806 83.265 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1831 1.0523 16.576 4 Median 1.1519 1.0798 NaN 1 0 Median 1.2152 1.0255 NaN 1 0 Median 1.0391 1.0092 NaN 1 0 Median 1.7142 1.4383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10739000 4610100 6128700 6406900 2713900 3693000 1746000 781800 964250 1928000 881820 1046200 657860 232600 425260 0 0 0 0 0 0 8611 97 8947 42790;42791;42792;42793 42854;42855;42856;42857 42854 4 FAYVPFGAGR NPDRYLQDNPASGEKFAYVPFGAGRHRCIG ASGEKFAYVPFGAGRHRCIGENFAYVQIKT K F A G R H 2 1 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 1 1 0 0 10 0 1083.5502 A0A0C4DFL7;Q16850;H7C0D0 A0A0C4DFL7 443 452 CYP51A1 Lanosterol 14-alpha demethylase yes no 2 0.0049989 66.682 By MS/MS 1 1.0703 1.0678 NaN 1 Median 1.0703 1.0678 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2842300 1491200 1351100 2842300 1491200 1351100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8612 227 8948 42794 42858 42858 1 FAYWSGYVK QSLKDTLKKFSIEKRFAYWSGYVKSLAVHV FSIEKRFAYWSGYVKSLAVHVAETEGSSCT R F A V K S 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 2 1 0 0 9 0 1119.5389 Q5SRE5 Q5SRE5 1072 1080 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.0061228 55.531 By matching By MS/MS By matching 1 2 1 1.1345 1.118 11.888 4 Median NaN NaN NaN 0 0 Median 1.1693 1.0189 NaN 1 0 Median 1.0087 1.1001 15.407 2 0 Median 1.372 1.2337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5932600 2597100 3335400 0 0 0 366980 184960 182010 5249300 2302300 2947000 316260 109870 206390 0 0 0 0 0 0 8613 3074 8949 42795;42796;42797;42798 42859;42860 42859 2 FCANTCVECR VQKDGHHCCLKCFDKFCANTCVECRKPIGA KCFDKFCANTCVECRKPIGADSKEVHYKNR K F C C R K 1 1 1 0 3 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1315.5108 Q5JXI8 Q5JXI8 35 44 FHL1 no no 2 2.7968E-10 171.73 By MS/MS 1 1.2031 1.0003 NaN 1 Median NaN NaN NaN 0 0 Median 1.2031 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32419000 14572000 17847000 0 0 0 32419000 14572000 17847000 0 0 0 0 0 0 0 0 0 0 0 0 8614 3060 8950 42799 42861;42862 42862 2 FCEVIPGLNDTAENLLR GLDKVIVLWTANTERFCEVIPGLNDTAENL EVIPGLNDTAENLLRTIELGLEVSPSTLFA R F C L R T 1 1 2 1 1 0 2 1 0 1 3 0 0 1 1 0 1 0 0 1 0 0 17 0 1959.9724 Q9NPH2;J3KRH4 Q9NPH2 234 250 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2 0.037534 22.879 By MS/MS 1 0.48319 0.48699 NaN 1 Median 0.48319 0.48699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2216200 1339200 876950 2216200 1339200 876950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8615 4052 8951 42800 42863 42863 1 FCFTPHTEEGCLSER APRRQQEQQVPILEKFCFTPHTEEGCLSER FCFTPHTEEGCLSERAALQEELQLCKGLVQ K F C E R A 0 1 0 0 2 0 3 1 1 0 1 0 0 2 1 1 2 0 0 0 0 0 15 0 1868.7822 P49327;A0A0U1RQF0 P49327 1117 1131 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 4.4076E-05 76.759 By MS/MS 2 1.5055 1.2554 6.6649 2 Median NaN NaN NaN 0 0 Median 1.5055 1.2554 6.6649 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14116000 4976600 9139200 0 0 0 14116000 4976600 9139200 0 0 0 0 0 0 0 0 0 0 0 0 8616 2377 8952 42801;42802 42864;42865;42866;42867 42865 4 FCIWTESAFR KLNILKLAPGGHVGRFCIWTESAFRKLDEL GHVGRFCIWTESAFRKLDELYGTWRKAASL R F C F R K 1 1 0 0 1 0 1 0 0 1 0 0 0 2 0 1 1 1 0 0 0 0 10 0 1315.6019 P36578;H3BM89 P36578 249 258 RPL4 60S ribosomal protein L4 yes no 2 0.00073339 99.442 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1855 1.1495 10.393 4 Median 1.1152 1.0965 NaN 1 0 Median 1.1605 0.97344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2109 1.2172 NaN 1 0 Median 1.3847 1.2051 NaN 1 0 Median 41999000 18866000 23132000 4852500 1911200 2941300 30255000 13764000 16491000 0 0 0 0 0 0 6441800 2950400 3491400 448950 240870 208080 8617 2260 8953 42803;42804;42805;42806 42868;42869;42870;42871;42872 42872 5 FCLDNGAK ITNNQRIKAAVPSIKFCLDNGAKSVVLMSH AAVPSIKFCLDNGAKSVVLMSHLGRPDGVP K F C A K S 1 0 1 1 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 923.4171 P00558 P00558 49 56 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.017569 48.561 By MS/MS 1 1.5359 1.3244 NaN 1 Median NaN NaN NaN 0 0 Median 1.5359 1.3244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2589100 1101400 1487700 0 0 0 2589100 1101400 1487700 0 0 0 0 0 0 0 0 0 0 0 0 8618 1824 8954 42807 42873 42873 1 FCLQYTR RVERLYHDIAQQAFKFCLQYTRKAEFRKLC DIAQQAFKFCLQYTRKAEFRKLCDNLRMHL K F C T R K 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 986.46439 Q14152 Q14152 184 190 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.025229 54.549 By MS/MS 2 1.4448 1.2457 10.779 2 Median NaN NaN NaN 0 0 Median 1.4448 1.2457 10.779 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3418400 1400200 2018200 0 0 0 3418400 1400200 2018200 0 0 0 0 0 0 0 0 0 0 0 0 8619 2860 8955 42808;42809 42874 42874 1 FDADYAEK AGDWKTTFTVAQNERFDADYAEKMAGCSLS TVAQNERFDADYAEKMAGCSLSFRSEL___ R F D E K M 2 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 8 0 957.40798 A0A0A6YYL2;P0DMN0;P0DMM9;P50225 P50225 276 283 SULT1A4;SULT1A3;SULT1A1 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1 no no 2 0.0064074 71.379 By MS/MS By matching By matching 1 1 1 1.2309 1.3142 30.219 3 Median 0.89578 0.84175 NaN 1 0 Median 1.7815 1.4981 NaN 1 0 Median 1.2309 1.3142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17014000 7012400 10002000 6612000 3098500 3513500 9085600 3173400 5912200 1316600 740480 576130 0 0 0 0 0 0 0 0 0 8620 2410;208 8956 42810;42811;42812 42875 42875 1 FDAEVSQWK EDEKVLYSQRVKLFRFDAEVSQWKERGLGN RVKLFRFDAEVSQWKERGLGNLKILKNEVN R F D W K E 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 9 0 1108.5189 P49792;J3KNE0;A6NKT7 P49792 2045 2053 RANBP2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3 no no 2 0.0005315 117.04 By matching By MS/MS By MS/MS By MS/MS 1 4 2 2 1.2696 1.1521 21.021 9 Median 2.0825 2.0662 NaN 1 0 Median 1.3481 1.1625 3.0044 4 1 Median 1.0621 1.1517 8.1865 2 1 Median 1.1188 1.0508 6.4462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67253000 32572000 34682000 2931100 1068800 1862300 11625000 4788000 6837000 48150000 24550000 23601000 4546900 2165200 2381700 0 0 0 0 0 0 8621 2401;525 8957 42813;42814;42815;42816;42817;42818;42819;42820;42821 42876;42877;42878;42879;42880;42881;42882;42883 42877 8 FDAEVSQWKER EDEKVLYSQRVKLFRFDAEVSQWKERGLGN KLFRFDAEVSQWKERGLGNLKILKNEVNGK R F D E R G 1 1 0 1 0 1 2 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 11 1 1393.6626 P49792;J3KNE0;A6NKT7 P49792 2045 2055 RANBP2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3 no no 2;3 0.00017618 110.53 By MS/MS 2 3.2364 3.7543 167.47 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.2364 3.7543 167.47 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33456000 8465000 24991000 0 0 0 0 0 0 33456000 8465000 24991000 0 0 0 0 0 0 0 0 0 8622 2401;525 8958 42822;42823 42884;42885;42886 42885 3 FDAGELITQR LPSITTEILKSVVARFDAGELITQRELVSR SVVARFDAGELITQRELVSRQVSDDLTERA R F D Q R E 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1148.5826 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2 P35232 134 143 PHB Prohibitin yes no 2 0.00036109 94.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 2 1.3989 1.2114 14.491 12 Median 1.0385 0.96791 13.798 3 1 Median 1.5061 1.258 10.537 3 1 Median 1.1421 1.1093 2.9585 2 0 Median 1.5566 1.2981 NaN 1 0 Median 1.3683 1.3776 NaN 1 0 Median 1.4988 1.3434 14.304 2 0 Median 457410000 199910000 257500000 312260000 140400000 171850000 68840000 25537000 43303000 46521000 21769000 24752000 2632100 1063900 1568200 15158000 6154200 9004000 11999000 4977600 7021500 8623 2233 8959 42824;42825;42826;42827;42828;42829;42830;42831;42832;42833;42834;42835 42887;42888;42889;42890;42891;42892;42893;42894;42895;42896;42897;42898;42899;42900;42901 42890 15 FDAMPFTLR KMKTSRAFFSEVERRFDAMPFTLRAFEDEK SEVERRFDAMPFTLRAFEDEKKARMGVVEC R F D L R A 1 1 0 1 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 9 0 1096.5376 Q9UQ80 Q9UQ80 273 281 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.00091857 90.657 By MS/MS By matching By MS/MS By MS/MS 4 6 5 6 0.99686 0.901 18.277 21 Median 0.97123 0.9494 20.496 4 1 Median 1.1577 0.99966 15.806 6 0 Median 0.81554 0.80344 13.161 5 2 Median 1.0322 0.89776 20.724 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133960000 67517000 66442000 19983000 9340100 10642000 9801600 4410900 5390700 49533000 26781000 22753000 54642000 26986000 27656000 0 0 0 0 0 0 8624 4360 8960;8961 42836;42837;42838;42839;42840;42841;42842;42843;42844;42845;42846;42847;42848;42849;42850;42851;42852;42853;42854;42855;42856 42902;42903;42904;42905;42906;42907;42908;42909;42910;42911;42912;42913 42905 1933 12 FDASFFGVHPK YGLPRRSGKLKDLSRFDASFFGVHPKQAHT DLSRFDASFFGVHPKQAHTMDPQLRLLLEV R F D P K Q 1 0 0 1 0 0 0 1 1 0 0 1 0 3 1 1 0 0 0 1 0 0 11 0 1250.6084 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 60 70 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 0.00013635 85.731 By MS/MS By MS/MS By matching By matching By matching 10 6 3 1 1 1.072 1.0709 30.261 21 Median 0.93496 0.89553 29.35 10 1 Median 1.2853 1.1308 12.759 6 0 Median 1.1241 1.2484 4.6564 3 0 Median NaN NaN NaN 0 0 Median 1.5607 1.6237 NaN 1 0 Median 1.5134 1.2273 NaN 1 0 Median 178370000 90101000 88265000 140310000 72998000 67314000 26856000 11802000 15054000 10317000 5005900 5310800 0 0 0 797320 257090 540230 83593 38022 45570 8625 2377 8962 42857;42858;42859;42860;42861;42862;42863;42864;42865;42866;42867;42868;42869;42870;42871;42872;42873;42874;42875;42876;42877 42914;42915;42916;42917;42918;42919;42920;42921;42922;42923;42924;42925;42926;42927;42928 42919 15 FDAVIGYK PERFLAVLKRKISVKFDAVIGYKMKAQ___ KRKISVKFDAVIGYKMKAQ___________ K F D Y K M 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 911.47527 D6RCD0;Q8NBQ5 D6RCD0 245 252 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 0.018519 47.849 By matching By MS/MS 1 1 1.6007 1.445 9.998 2 Median 1.6037 1.5509 NaN 1 0 Median 1.5977 1.3464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5837600 2233000 3604600 3690600 1370600 2320000 2147100 862420 1284600 0 0 0 0 0 0 0 0 0 0 0 0 8626 819 8963 42878;42879 42929 42929 1 FDCHYCR ______________________________ ______________________________ K F D C R D 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 1056.3906 Q5JXI8 Q5JXI8 5 11 FHL1 no no 2 0.019913 60.961 By MS/MS 1 1.4886 1.2598 NaN 1 Median NaN NaN NaN 0 0 Median 1.4886 1.2598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1436500 638760 797770 0 0 0 1436500 638760 797770 0 0 0 0 0 0 0 0 0 0 0 0 8627 3060 8964 42880 42930;42931 42930 2 FDCHYCRDPLQGK ______________________________ EKFDCHYCRDPLQGKKYVQKDGHHCCLKCF K F D G K K 0 1 0 2 2 1 0 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 13 1 1694.7293 Q5JXI8 Q5JXI8 5 17 FHL1 no no 3 0.00022454 67.252 By MS/MS 1 0.87178 0.77798 NaN 1 Median NaN NaN NaN 0 0 Median 0.87178 0.77798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8668800 4630500 4038300 0 0 0 8668800 4630500 4038300 0 0 0 0 0 0 0 0 0 0 0 0 8628 3060 8965 42881 42932;42933 42933 2 FDDAVVQSDMK PTNTVFDAKRLIGRRFDDAVVQSDMKHWPF IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R F D M K H 1 0 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 11 0 1253.5598 P11142;E9PKE3;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 78 88 HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0001135 136.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 3 1 3 1.1575 0.98984 4.7423 15 Median 1.1781 1.0675 4.2844 2 0 Median 1.1577 1.0026 2.9451 4 0 Median 0.98554 1.0032 7.0851 2 1 Median 1.1204 0.94834 4.9841 3 0 Median 0.95935 0.98144 NaN 1 0 Median 1.1789 0.95694 2.2219 3 0 Median 245600000 114560000 131040000 101010000 47046000 53964000 75298000 34074000 41224000 38058000 19275000 18783000 18654000 8497100 10157000 9594100 4370700 5223400 2986600 1298400 1688200 8629 1950 8966;8967 42882;42883;42884;42885;42886;42887;42888;42889;42890;42891;42892;42893;42894;42895;42896 42934;42935;42936;42937;42938;42939;42940;42941;42942;42943;42944;42945;42946;42947;42948 42934 726 15 FDDDKVSIVTPEDILR HYVSWVKRKQDEWIKFDDDKVSIVTPEDIL DDDKVSIVTPEDILRLSGGGDWHIAYVLLY K F D L R L 0 1 0 4 0 0 1 0 0 2 1 1 0 1 1 1 1 0 0 2 0 0 16 1 1860.9469 A6NJA2;P54578 A6NJA2 404 419 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 3 0.0011728 35.329 By MS/MS By MS/MS 1 2 1.2172 1.231 23.762 3 Median 1.2172 1.231 NaN 1 0 Median 1.1098 1.0201 29.899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5248000 2393100 2854800 2578700 1072200 1506500 2669200 1320900 1348300 0 0 0 0 0 0 0 0 0 0 0 0 8630 523 8968 42897;42898;42899 42949;42950 42950 2 FDDDVVSR YVVYLNPKGDGKWCKFDDDVVSRCTKEEAI GDGKWCKFDDDVVSRCTKEEAIEHNYGGHD K F D S R C 0 1 0 3 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 951.42977 Q93009;H3BND8;F5H2X1 Q93009 480 487 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0024268 119.29 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2347 1.135 7.1871 4 Median 1.2307 1.19 NaN 1 0 Median 1.2388 1.0351 NaN 1 0 Median 1.0889 1.1977 NaN 1 0 Median 1.2743 1.0825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26846000 11877000 14968000 4490200 1704600 2785600 11480000 5086100 6394400 6293000 3161000 3132000 4582200 1925800 2656400 0 0 0 0 0 0 8631 3574 8969 42900;42901;42902;42903 42951;42952;42953;42954;42955;42956 42951 6 FDDGAGGDNEVQR CLIFFDEIDAIGGARFDDGAGGDNEVQRTM ARFDDGAGGDNEVQRTMLELINQLDGFDPR R F D Q R T 1 1 1 3 0 1 1 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 13 0 1378.5749 P35998 P35998 285 297 PSMC2 26S protease regulatory subunit 7 yes yes 2 7.4862E-07 113.63 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.2281 1.1231 5.5817 5 Median 1.1965 1.1622 NaN 1 0 Median 1.2507 1.0783 5.7591 2 0 Median 1.0585 1.0348 NaN 1 0 Median 1.3142 1.1449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16894000 7386300 9507600 6682700 2834600 3848100 8119700 3672900 4446800 744990 338480 406510 1346600 540380 806190 0 0 0 0 0 0 8632 2253 8970 42904;42905;42906;42907;42908 42957;42958;42959;42960;42961;42962;42963 42957 7 FDDGDVTECK IQRNGGDGERNRWYKFDDGDVTECKMDDDE NRWYKFDDGDVTECKMDDDEEMKNQCFGGE K F D C K M 0 0 0 3 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 0 1184.4656 Q93008;O00507 Q93008 1900 1909 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0062678 64.04 By MS/MS 1 0.92564 0.8096 NaN 1 Median NaN NaN NaN 0 0 Median 0.92564 0.8096 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2210400 1014200 1196200 0 0 0 2210400 1014200 1196200 0 0 0 0 0 0 0 0 0 0 0 0 8633 3573 8971 42909 42964 42964 1 FDDKHIPGSPFTAK SYLPTAPGDYSIIVRFDDKHIPGSPFTAKI RFDDKHIPGSPFTAKITGDDSMRTSQLNVG R F D A K I 1 0 0 2 0 0 0 1 1 1 0 2 0 2 2 1 1 0 0 0 0 0 14 1 1558.778 Q14315 Q14315 1932 1945 FLNC Filamin-C yes yes 3 0.00033282 51.073 By MS/MS By MS/MS By matching By matching 3 1 2 1 1.0854 1.0476 22.15 7 Median 1.0854 1.0476 8.7018 3 0 Median 0.78417 0.75098 NaN 1 0 Median 0.94215 1.0233 15.876 2 0 Median 1.6972 1.5266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84011000 43555000 40456000 40937000 20320000 20616000 34742000 18932000 15810000 7342900 3923800 3419100 989740 378630 611110 0 0 0 0 0 0 8634 2871 8972 42910;42911;42912;42913;42914;42915;42916 42965;42966;42967;42968;42969 42969 5 FDDKPDYSYLR PSEFSTYLNFCRSLRFDDKPDYSYLRQLFR RSLRFDDKPDYSYLRQLFRNLFHRQGFSYD R F D L R Q 0 1 0 3 0 0 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 11 1 1417.6514 P49674;H0Y645;B0QY35;B0QY34;P48730;H7BYT1 P49674 260 270 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 3 0.00026194 62.466 By matching By matching By MS/MS By MS/MS By matching 1 1 3 2 1 0.97737 0.95327 13.057 8 Median 1.2531 1.273 NaN 1 0 Median 0.94884 0.88633 NaN 1 0 Median 0.85374 0.88873 4.0653 3 1 Median 1.111 1.0204 8.1386 2 0 Median NaN NaN NaN 0 0 Median 1.1581 1.0669 NaN 1 0 Median 28227000 14892000 13335000 1110400 504130 606280 253190 114050 139140 16691000 9272500 7418400 9799200 4845200 4954000 0 0 0 373820 156320 217500 8635 2390;1248 8973 42917;42918;42919;42920;42921;42922;42923;42924 42970;42971;42972;42973;42974 42971 5 FDDKYTLK MDPDDIWQLSSSLKRFDDKYTLKLTFISGR LSSSLKRFDDKYTLKLTFISGRTKQQREAE R F D L K L 0 0 0 2 0 0 0 0 0 0 1 2 0 1 0 0 1 0 1 0 0 0 8 1 1028.5179 A0A087WUC6;E9PI68;Q15005;E9PL01;E9PRB9 A0A087WUC6 167 174 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.058532 55.112 By MS/MS 1 1.1813 1.1786 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1813 1.1786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5818000 2375700 3442300 0 0 0 0 0 0 5818000 2375700 3442300 0 0 0 0 0 0 0 0 0 8636 29 8974 42925 42975 42975 1 FDDPGLMLMGFK RQIILEKEETEELKRFDDPGLMLMGFKPLV LKRFDDPGLMLMGFKPLVLLKKHHYLRPSL R F D F K P 0 0 0 2 0 0 0 2 0 0 2 1 2 2 1 0 0 0 0 0 0 0 12 0 1369.641 P12956;B1AHC9 P12956 340 351 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00087622 59.8 By MS/MS 1 1.1609 0.99546 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1609 0.99546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1158800 549710 609090 0 0 0 0 0 0 0 0 0 1158800 549710 609090 0 0 0 0 0 0 8637 1985 8975 42926 42976 42976 1 FDDPGLMLMGFKPLVLLK RQIILEKEETEELKRFDDPGLMLMGFKPLV PGLMLMGFKPLVLLKKHHYLRPSLFVYPEE R F D L K K 0 0 0 2 0 0 0 2 0 0 5 2 2 2 2 0 0 0 0 1 0 0 18 1 2033.1094 P12956;B1AHC9 P12956 340 357 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 2.4495E-05 66.262 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 0.81719 0.85434 21.372 8 Median 0.83082 0.82727 16.942 2 0 Median 0.88805 0.82137 15.41 2 0 Median 0.71904 0.82283 33.39 3 0 Median NaN NaN NaN 0 0 Median 0.82758 0.88705 NaN 1 0 Median NaN NaN NaN 0 0 Median 9449800 5139900 4310000 3364800 1735400 1629400 3012300 1537400 1474800 2949600 1809800 1139800 0 0 0 123140 57223 65920 0 0 0 8638 1985 8976 42927;42928;42929;42930;42931;42932;42933;42934 42977;42978;42979 42979 3 FDDPGLMLMGFKPLVLLKK RQIILEKEETEELKRFDDPGLMLMGFKPLV GLMLMGFKPLVLLKKHHYLRPSLFVYPEES R F D K K H 0 0 0 2 0 0 0 2 0 0 5 3 2 2 2 0 0 0 0 1 0 0 19 2 2161.2043 P12956;B1AHC9 P12956 340 358 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.00052652 33.308 By MS/MS By matching By matching 1 1 1 0.76779 0.78349 25.814 3 Median 0.76779 0.78349 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64707 0.74809 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0719 1.1951 NaN 1 0 Median NaN NaN NaN 0 0 Median 3259900 1745300 1514600 2710500 1423300 1287200 0 0 0 312460 185650 126820 0 0 0 236940 136370 100570 0 0 0 8639 1985 8977 42935;42936;42937 42980 42980 1 FDDPLLGPR MNRGIKDLSKVKLMRFDDPLLGPRRVPVLG KVKLMRFDDPLLGPRRVPVLGKEYTEKTPI R F D P R R 0 1 0 2 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 0 0 0 9 0 1028.5291 Q9P2J5 Q9P2J5 1118 1126 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00081745 96.253 By MS/MS By matching 1 1 0.86292 0.77888 1.4828 2 Median 0.81655 0.78709 NaN 1 0 Median 0.91191 0.77075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14047000 7118100 6929200 9423200 4789500 4633700 4624100 2328600 2295500 0 0 0 0 0 0 0 0 0 0 0 0 8640 4224 8978 42938;42939 42981;42982 42981 2 FDDTNPEK NQHYQVNFKGKLIMRFDDTNPEKEKEDFEK KGKLIMRFDDTNPEKEKEDFEKVILEDVAM R F D E K E 0 0 1 2 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 8 0 964.41379 P07814;V9GYZ6;P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQT0;A0A0U1RR66 P07814 236 243 EPRS;QARS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase;Glutamine--tRNA ligase no no 2 0.063982 31.76 By matching By MS/MS 2 1 1.1069 0.89486 5.0689 3 Plateau 0.90533 0.89279 0.32704 2 0 Median 1.108 0.97463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2788500 1289900 1498500 706610 393760 312850 2081900 896170 1185700 0 0 0 0 0 0 0 0 0 0 0 0 8641 1892;2356 8979 42940;42941;42942 42983 42983 1 FDDTNPEKEKEDFEK NQHYQVNFKGKLIMRFDDTNPEKEKEDFEK FDDTNPEKEKEDFEKVILEDVAMLHIKPDQ R F D E K V 0 0 1 3 0 0 4 0 0 0 0 3 0 2 1 0 1 0 0 0 0 0 15 2 1869.8269 P07814;V9GYZ6 P07814 236 250 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3;4 8.806E-07 91.812 By MS/MS By MS/MS By matching 2 2 1 0.93392 1.0479 13.012 4 Median 0.85342 0.93438 6.3125 2 0 Median 1.0051 1.1559 3.9505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29004000 13875000 15130000 19019000 9399200 9619900 8403500 4006800 4396600 1581900 468480 1113400 0 0 0 0 0 0 0 0 0 8642 1892 8980 42943;42944;42945;42946;42947 42984;42985;42986;42987;42988;42989;42990;42991 42988 8 FDDVTSEDTR EKRTELGKLVGYTVRFDDVTSEDTRIKFLT GYTVRFDDVTSEDTRIKFLTDGMLLREAIS R F D T R I 0 1 0 3 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 10 0 1183.4993 Q9H6R0;I3L1L6 Q9H6R0 157 166 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.00056005 93.111 By MS/MS By matching 1 1 1.1424 1.1976 11.029 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0377 1.1077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2577 1.2947 NaN 1 0 Median NaN NaN NaN 0 0 Median 4037500 1642900 2394600 0 0 0 0 0 0 2246100 950470 1295700 0 0 0 1791400 692390 1099000 0 0 0 8643 3975 8981 42948;42949 42992;42993 42992 2 FDEATQLR VQMTKEVQKAMDDKRFDEATQLRGGSFENN KAMDDKRFDEATQLRGGSFENNWNIYKLLA R F D L R G 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 978.47706 P17858 P17858 367 374 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.011566 75.109 By MS/MS 1 1.0475 0.91017 NaN 1 Median NaN NaN NaN 0 0 Median 1.0475 0.91017 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2127000 929050 1198000 0 0 0 2127000 929050 1198000 0 0 0 0 0 0 0 0 0 0 0 0 8644 2047 8982 42950 42994 42994 1 FDEHDGPVR VIQLWDYRMCTLIDKFDEHDGPVRGIDFHK CTLIDKFDEHDGPVRGIDFHKQQPLFVSGG K F D V R G 0 1 0 2 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 9 0 1070.4781 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IS23;A0A3B3ITX2 P53621 47 55 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0014358 81.548 By MS/MS 1 0.93682 0.79153 NaN 1 Median NaN NaN NaN 0 0 Median 0.93682 0.79153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4726300 2405000 2321300 0 0 0 4726300 2405000 2321300 0 0 0 0 0 0 0 0 0 0 0 0 8645 2473 8983 42951 42995;42996 42995 2 FDEIFSATR DSNWPLSEGKALKQKFDEIFSATRYIKALE KALKQKFDEIFSATRYIKALETLRQVRQTQ K F D T R Y 1 1 0 1 0 0 1 0 0 1 0 0 0 2 0 1 1 0 0 0 0 0 9 0 1084.5189 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7;C9JNH8 Q92878 176 184 RAD50 DNA repair protein RAD50 yes no 2 0.00097908 87.308 By matching By MS/MS By matching 2 1 1 1.3719 1.3279 50.977 4 Median NaN NaN NaN 0 0 Median 1.3719 1.2048 18.577 2 0 Median 1.1669 1.2834 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.1833 3.3278 NaN 1 0 Median NaN NaN NaN 0 0 Median 10492000 4364500 6127200 0 0 0 1743700 626350 1117300 7280400 3479000 3801300 0 0 0 1467700 259090 1208600 0 0 0 8646 3561 8984 42952;42953;42954;42955 42997 42997 1 FDEILEASDGIMVAR IKIISKIENHEGVRRFDEILEASDGIMVAR FDEILEASDGIMVARGDLGIEIPAEKVFLA R F D A R G 2 1 0 2 0 0 2 1 0 2 1 0 1 1 0 1 0 0 0 1 0 0 15 0 1664.808 H3BTN5;P14618;B4DNK4 P14618 280 294 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 3.1537E-06 90.685 By MS/MS By MS/MS By MS/MS 1 3 1 1.1289 1.0888 15.499 5 Median 1.129 1.0888 NaN 1 0 Median 1.0518 0.9117 18.377 3 0 Median 1.1289 1.1873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14218000 6369500 7848700 6379100 2908800 3470400 5722200 2580600 3141700 2116800 880150 1236600 0 0 0 0 0 0 0 0 0 8647 2005;1237 8985 42956;42957;42958;42959;42960 42998;42999;43000;43001;43002;43003;43004;43005;43006 42998 9 FDEISFVNFAR ERGFIYVHKPPVHIRFDEISFVNFARGTTT VHIRFDEISFVNFARGTTTTRSFDFEIETK R F D A R G 1 1 1 1 0 0 1 0 0 1 0 0 0 3 0 1 0 0 0 1 0 0 11 0 1343.651 Q08945 Q08945 371 381 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.00013531 118.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 4 4 1.2241 1.0443 14.302 15 Median 0.93384 0.90136 7.2693 2 0 Median 1.1891 1.0551 NaN 1 0 Median 1.3709 1.4391 NaN 1 0 Median 1.1732 1.0182 5.9196 3 0 Median 1.2819 1.2564 3.1221 4 0 Linear 1.2613 1.0279 5.7991 4 0 Median 64511000 28307000 36204000 10201000 5486700 4714600 1179100 510030 669080 4800600 1919000 2881600 891640 389970 501670 38288000 16312000 21976000 9150600 3689500 5461100 8648 2743 8986 42961;42962;42963;42964;42965;42966;42967;42968;42969;42970;42971;42972;42973;42974;42975 43007;43008;43009;43010;43011;43012;43013;43014;43015;43016;43017;43018;43019;43020;43021;43022;43023;43024 43015 18 FDENGLPTHDMEGK PPSEMFLSETDKYSKFDENGLPTHDMEGKE KFDENGLPTHDMEGKELSKGQAKKLKKLFE K F D G K E 0 0 1 2 0 0 2 2 1 0 1 1 1 1 1 0 1 0 0 0 0 0 14 0 1588.6828 P49589 P49589 701 714 CARS Cysteine--tRNA ligase, cytoplasmic yes yes 3 0.014878 23.831 By MS/MS 1 0.92123 0.79906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92123 0.79906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2300800 1208900 1091900 0 0 0 0 0 0 0 0 0 2300800 1208900 1091900 0 0 0 0 0 0 8649 2386 8987 42976 43025 43025 1 FDESTTGSNFSFK ASPLASSPVRKNLFRFDESTTGSNFSFKSA FRFDESTTGSNFSFKSALSLSKSPAKLNQS R F D F K S 0 0 1 1 0 0 1 1 0 0 0 1 0 3 0 3 2 0 0 0 0 0 13 0 1465.6361 Q99666;J3KQ37;O14715 Q99666 1284 1296 RGPD5;RGPD8 RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 2 0.033817 63.624 By matching By matching By MS/MS By matching 1 1 1 1 0.99192 0.86789 153.7 4 Median 0.048534 0.047421 NaN 1 0 Median 0.97582 0.83071 NaN 1 0 Median 1.1869 1.3227 NaN 1 0 Median 1.0083 0.90673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29210000 25671000 3538500 23863000 23185000 678320 1103900 584040 519880 4025800 1787300 2238500 217040 115200 101840 0 0 0 0 0 0 8650 3762 8988 42977;42978;42979;42980 43026 43026 0 FDETEQALANER KIIKKSSGFSGKGFKFDETEQALANERKKL GFKFDETEQALANERKKLQKAALGLQDSDD K F D E R K 2 1 1 1 0 1 3 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 12 0 1421.6423 Q7L014;A0A0C4DG89 Q7L014 780 791 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 5.3721E-11 140.3 By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 1.052 0.9217 10.47 7 Median 1.1329 1.1225 NaN 1 0 Median 1.0273 0.88495 1.005 2 0 Median 0.84001 0.92375 NaN 1 0 Median 1.0845 0.9217 9.1851 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25266000 12442000 12824000 1919900 907720 1012200 5774400 2753300 3021100 8959200 4435500 4523700 8612200 4345600 4266500 0 0 0 0 0 0 8651 3216 8989 42981;42982;42983;42984;42985;42986;42987 43027;43028;43029;43030;43031 43031 5 FDEVLIR YVRCIKPNDAKQPGRFDEVLIRHQVKYLGL NDAKQPGRFDEVLIRHQVKYLGLLENLRVR R F D I R H 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 890.48617 F5H6E2;O00159 F5H6E2 613 619 MYO1C Unconventional myosin-Ic yes no 2 0.040795 44.692 By MS/MS 1 0.90572 0.77801 NaN 1 Median NaN NaN NaN 0 0 Median 0.90572 0.77801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1839800 996140 843670 0 0 0 1839800 996140 843670 0 0 0 0 0 0 0 0 0 0 0 0 8652 1042 8990 42988 43032;43033 43033 2 FDFPVSYLPGPVK PMMKLVYKLQAEDYKFDFPVSYLPGPVKAS YKFDFPVSYLPGPVKASIQECILPDSPLYH K F D V K A 0 0 0 1 0 0 0 1 0 0 1 1 0 2 3 1 0 0 1 2 0 0 13 0 1464.7653 Q9NXE4;C9J647 Q9NXE4 146 158 SMPD4 Sphingomyelin phosphodiesterase 4 no no 2 0.033637 26.514 By MS/MS By matching 1 1 0.73158 0.70818 12.908 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73473 0.77586 NaN 1 0 Median 0.72844 0.64641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2013700 1070500 943220 0 0 0 0 0 0 1779700 938580 841170 233930 131880 102050 0 0 0 0 0 0 8653 4162;678 8991 42989;42990 43034 43034 1 FDGALNVDLTEFQTNLVPYPR RLISQIVSSITASLRFDGALNVDLTEFQTN VDLTEFQTNLVPYPRIHFPLATYAPVISAE R F D P R I 1 1 2 2 0 1 1 1 0 0 3 0 0 2 2 0 2 0 1 2 0 0 21 0 2408.2012 Q9BQE3;F5H5D3;F8VVB9;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 244 264 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 5.439E-67 223.72 By MS/MS By MS/MS By matching By matching 6 2 1 1 0.84788 0.77648 17.428 10 Median NaN NaN NaN 0 0 Median 0.84788 0.72846 11.859 6 0 Median 0.79234 0.77648 3.5031 2 0 Median 0.92759 0.8127 NaN 1 0 Median 1.2094 1.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median 77773000 41660000 36113000 0 0 0 36986000 19327000 17659000 40186000 22026000 18160000 282350 162040 120310 318720 144820 173900 0 0 0 8654 2633;3212;1034 8992 42991;42992;42993;42994;42995;42996;42997;42998;42999;43000 43035;43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047 43038 13 FDGILGMAYPR GEATKQPGITFIAAKFDGILGMAYPRISVN IAAKFDGILGMAYPRISVNNVLPVFDNLMQ K F D P R I 1 1 0 1 0 0 0 2 0 1 1 0 1 1 1 0 0 0 1 0 0 0 11 0 1238.6118 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;H7C469;F8WD96;C9JH19;F8W787 A0A1B0GW44 188 198 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.00018201 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 5 2 3 2 1 1.4668 1.3671 79.374 20 Median 1.3408 1.2765 93.279 7 0 Median 1.2684 1.0689 68.121 5 0 Median 1.5978 1.5337 3.7166 2 0 Median 0.47776 0.42937 99.518 3 1 Median 2.3469 2.3047 17.793 2 0 Median 2.2773 1.8655 NaN 1 0 Median 182210000 76019000 106190000 140430000 59197000 81231000 15896000 7390700 8505700 18904000 7025800 11878000 2499100 1220000 1279200 4127500 1104400 3023100 352860 80809 272050 8655 324 8993;8994 43001;43002;43003;43004;43005;43006;43007;43008;43009;43010;43011;43012;43013;43014;43015;43016;43017;43018;43019;43020 43048;43049;43050;43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064 43055 156 17 FDGILTEGEGPR LEKKWGHNITEFQQRFDGILTEGEGPRRLK QQRFDGILTEGEGPRRLKNLYFLYLIELRA R F D P R R 0 1 0 1 0 0 2 3 0 1 1 0 0 1 1 0 1 0 0 0 0 0 12 0 1289.6252 Q96HE7 Q96HE7 288 299 ERO1L ERO1-like protein alpha yes yes 2 0.030376 28.204 By MS/MS 1 1.3084 1.1066 NaN 1 Median NaN NaN NaN 0 0 Median 1.3084 1.1066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5979900 2297200 3682800 0 0 0 5979900 2297200 3682800 0 0 0 0 0 0 0 0 0 0 0 0 8656 3666 8995 43021 43065;43066 43066 2 FDGSENRPFSPSPLNNISSTVTVK PYPTSRRQTFITLEKFDGSENRPFSPSPLN SPSPLNNISSTVTVKNNQETMIKTDFLPKA K F D V K N 0 1 3 1 0 0 1 1 0 1 1 1 0 2 3 5 2 0 0 2 0 0 24 1 2592.282 Q5UIP0 Q5UIP0 1227 1250 RIF1 Telomere-associated protein RIF1 yes yes 3 6.1963E-06 54.235 By MS/MS 1 0.56752 0.68026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56752 0.68026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12052000 7798600 4253200 0 0 0 0 0 0 12052000 7798600 4253200 0 0 0 0 0 0 0 0 0 8657 3109 8996 43022 43067;43068 43067 2 FDGVQDPR PRLKRRDFTPAELRRFDGVQDPRILMAING TPAELRRFDGVQDPRILMAINGKVFDVTKG R F D P R I 0 1 0 2 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 8 0 932.43519 O00264 O00264 81 88 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.0076735 66.073 By MS/MS By matching By matching 1 1 1 0.95563 0.90181 3.2827 3 Median 0.95563 0.90181 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92607 0.86815 NaN 1 0 Median 1.1076 0.92679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7410900 3871800 3539000 4664600 2422900 2241700 0 0 0 1530000 854280 675680 1216300 594660 621660 0 0 0 0 0 0 8658 1451 8997 43023;43024;43025 43069 43069 1 FDHIFYTGNTAVGK INGGVEETTELLKQRFDHIFYTGNTAVGKI RFDHIFYTGNTAVGKIVMEAAAKHLTPVTL R F D G K I 1 0 1 1 0 0 0 2 1 1 0 1 0 2 0 0 2 0 1 1 0 0 14 0 1568.7623 P51648;J3QRD1;I3L1M4 P51648 178 191 ALDH3A2 Fatty aldehyde dehydrogenase yes no 3 0.017765 36.445 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8659 1349 8998 43026 43070 43070 1 FDHVPLATPNGDVLIR IPGAGEIIIADNIIKFDHVPLATPNGDVLI DHVPLATPNGDVLIRDLNFEVRSGANVLIC K F D I R D 1 1 1 2 0 0 0 1 1 1 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1762.9366 P28288 P28288 442 457 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 0.0036412 41.542 By MS/MS 2 0.80826 0.83522 3.56 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80826 0.83522 3.56 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9288800 5020800 4268000 0 0 0 0 0 0 9288800 5020800 4268000 0 0 0 0 0 0 0 0 0 8660 2163 8999 43027;43028 43071;43072 43071 2 FDHYLNPYYK LKAKQARNSQFDFLRFDHYLNPYYKFIQKA FDFLRFDHYLNPYYKFIQKAMKEGRYTVLA R F D Y K F 0 0 1 1 0 0 0 0 1 0 1 1 0 1 1 0 0 0 3 0 0 0 10 0 1358.6295 Q12872 Q12872 245 254 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 3 0.0050934 37.556 By MS/MS By matching 2 1 1.124 1.0096 15.222 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9849 1.0702 20.995 2 0 Median 1.2045 1.0096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11168000 5745700 5422300 0 0 0 0 0 0 10373000 5425400 4947900 794730 320320 474410 0 0 0 0 0 0 8661 2765 9000 43029;43030;43031 43073 43073 1 FDIEMSMR EVRAASTEADKRLSRFDIEMSMRGDIFERI ADKRLSRFDIEMSMRGDIFERIVHLQETCD R F D M R G 0 1 0 1 0 0 1 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 8 0 1027.4467 Q9BYT8;E9PCB6 Q9BYT8 132 139 NLN Neurolysin, mitochondrial yes no 2 0.025155 42.869 By MS/MS By matching 1 1 1.2701 1.1958 8.7289 2 Median 1.1538 1.1242 NaN 1 0 Median 1.3981 1.2719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3830400 1770800 2059600 3066400 1482200 1584200 764000 288590 475410 0 0 0 0 0 0 0 0 0 0 0 0 8662 3895 9001 43032;43033 43074 43074 1 FDILFNR QKPLRLLACGDVEGKFDILFNRVQAIQKKS ACGDVEGKFDILFNRVQAIQKKSGNFDLLL K F D N R V 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 7 0 923.4865 Q69YN2;A0A286YF56;A0A0S2Z5Q6;A0A286YEP9 Q69YN2 18 24 CWF19L1 CWF19-like protein 1 yes no 2 0.017766 64.776 By matching By matching By MS/MS By matching 1 1 1 1 1.2949 1.2127 1.7958 4 Median 1.2053 1.2224 NaN 1 0 Median 1.3911 1.203 NaN 1 0 Median 1.122 1.1809 NaN 1 0 Median 1.44 1.229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5267300 2439600 2827700 1094100 545430 548620 1922300 799190 1123100 1942000 962810 979230 308890 132130 176770 0 0 0 0 0 0 8663 3129 9002 43034;43035;43036;43037 43075;43076 43076 2 FDINDATGDLDANRPVPFR QIAQDTGKLNVAYFRFDINDATGDLDANRP DATGDLDANRPVPFRLTPNISEFLTTIGVS R F D F R L 2 2 2 4 0 0 0 1 0 1 1 0 0 2 2 0 1 0 0 1 0 0 19 1 2132.0287 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3701 3719 TRRAP Transformation/transcription domain-associated protein yes no 3 3.3243E-05 44.005 By MS/MS 2 0.9848 1.1604 44.543 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9848 1.1604 44.543 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4875700 2644100 2231600 0 0 0 0 0 0 4875700 2644100 2231600 0 0 0 0 0 0 0 0 0 8664 991 9003 43038;43039 43077;43078 43077 2 FDKDHDVMLFLK TVDPELAASGATLPKFDKDHDVMLFLKMYD LPKFDKDHDVMLFLKMYDPKTRSLNYCGHI K F D L K M 0 0 0 3 0 0 0 0 1 0 2 2 1 2 0 0 0 0 0 1 0 0 12 1 1506.7541 Q93009;H3BND8 Q93009 679 690 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.0088954 29.341 By matching By matching By MS/MS By matching 1 1 1 1 1.2163 1.2728 24.241 4 Median 1.39 1.4691 NaN 1 0 Median 1.3963 1.3191 NaN 1 0 Median 1.0642 1.228 NaN 1 0 Median 0.88313 0.84124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11839000 5220700 6618700 2353000 766210 1586700 612270 246980 365280 8716200 4118100 4598100 157940 89399 68543 0 0 0 0 0 0 8665 3574 9004 43040;43041;43042;43043 43079;43080 43079 2 FDLALAATEAR HRYFSYLSKVGDKMRFDLALAATEARQCSD DKMRFDLALAATEARQCSDLLSQAQYHVAR R F D A R Q 4 1 0 1 0 0 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1176.6139 Q6PD62 Q6PD62 805 815 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.00015742 90.108 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.161 1.0905 25.462 5 Median 1.0875 1.0731 NaN 1 0 Median 1.161 1.0028 NaN 1 0 Median 1.0233 1.1251 NaN 1 0 Median 1.6623 1.4316 38.491 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18235000 8358600 9876900 2148300 842700 1305600 1499600 655360 844270 13295000 6308400 6987000 1292200 552110 740080 0 0 0 0 0 0 8666 3168 9005 43044;43045;43046;43047;43048 43081;43082;43083 43082 3 FDLIGLEGR RATDVHPLQRIDMGRFDLIGLEGRVSRYEA RIDMGRFDLIGLEGRVSRYEADTFLPRHRL R F D G R V 0 1 0 1 0 0 1 2 0 1 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1018.5447 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 946 954 SRCAP Helicase SRCAP yes no 2 0.00073077 101.64 By MS/MS By matching 1 1 1.0771 1.0338 9.3309 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0397 1.1043 NaN 1 0 Median 1.1159 0.96775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7518900 3584400 3934400 0 0 0 0 0 0 7224500 3454300 3770200 294350 130100 164260 0 0 0 0 0 0 8667 3199 9006 43049;43050 43084;43085 43084 2 FDLIWNR FAAKDTVYAVIPAEKFDLIWNRAQSCPTNV YAVIPAEKFDLIWNRAQSCPTNVAEAQCIA K F D N R A 0 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 962.4974 H0YEW4;A8MRA7;I3L448;Q5TC12;H0YD21 H0YEW4 98 104 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 yes no 2 0.01526 72.021 By MS/MS By matching By matching 2 1 1 1.2205 1.1736 5.2428 4 Median 1.1918 1.1793 5.6943 2 0 Median 1.3209 1.1037 NaN 1 0 Median 1.2434 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8079900 3512300 4567600 4161800 1813900 2348000 3614600 1554500 2060000 303440 143870 159570 0 0 0 0 0 0 0 0 0 8668 540 9007 43051;43052;43053;43054 43086;43087 43087 2 FDLLASNFPPLPGSSSR RPHPSTAESKAPTPKFDLLASNFPPLPGSS LLASNFPPLPGSSSRMPGELVLENRMSDVV K F D S R M 1 1 1 1 0 0 0 1 0 0 3 0 0 2 3 4 0 0 0 0 0 0 17 0 1803.9155 Q71RC2;X6RLN4 Q71RC2 477 493 LARP4 La-related protein 4 yes no 2 2.9201E-05 54.7 By matching By MS/MS By matching By matching 2 1 1 1 0.75469 0.71064 21.177 5 Median 0.62863 0.62212 28.676 2 0 Median 0.6128 0.54625 NaN 1 0 Median 0.78043 0.82344 NaN 1 0 Median 0.8648 0.71064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3427900 2017700 1410200 1745300 1035100 710200 1118000 677720 440310 484060 259040 225020 80455 45813 34642 0 0 0 0 0 0 8669 3211 9008 43055;43056;43057;43058;43059 43088;43089 43089 2 FDLLWLIQDRPDR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN SRFDLLWLIQDRPDRDNDLRLAQHITYVHQ R F D D R D 0 2 0 3 0 1 0 0 0 1 3 0 0 1 1 0 0 1 0 0 0 0 13 1 1685.8889 P33993 P33993 515 527 MCM7 DNA replication licensing factor MCM7 yes yes 2 1.7691E-06 120.09 By MS/MS 1 1.0106 0.99986 NaN 1 Median NaN NaN NaN 0 0 Median 1.0106 0.99986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12786000 6402400 6383400 0 0 0 12786000 6402400 6383400 0 0 0 0 0 0 0 0 0 0 0 0 8670 2225 9009 43060 43090;43091 43091 2 FDLLWLIQDRPDRDNDLR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN LWLIQDRPDRDNDLRLAQHITYVHQHSRQP R F D L R L 0 3 1 5 0 1 0 0 0 1 4 0 0 1 1 0 0 1 0 0 0 0 18 2 2299.1709 P33993 P33993 515 532 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.00058988 34.909 By MS/MS 1 1.4491 1.4629 NaN 1 Median NaN NaN NaN 0 0 Median 1.4491 1.4629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3739700 1752200 1987500 0 0 0 3739700 1752200 1987500 0 0 0 0 0 0 0 0 0 0 0 0 8671 2225 9010 43061 43092 43092 1 FDLMYAK NTTAIAEAWARLDHKFDLMYAKRAFVHWYV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG K F D A K R 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 7 0 886.42588 Q9BQE3;F5H5D3;A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;V9GZ17 P68363 395 401 TUBA1C;TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA8 Tubulin alpha-1C chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 0.017757 64.803 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 9 3 6 3 6 1.2968 1.0927 19.62 33 Median 1.0943 1.0373 4.4309 6 0 Median 1.2108 1.0266 19.218 9 0 Median 1.2461 1.2021 11.022 3 0 Median 1.3186 1.1339 4.9922 6 0 Median 1.6328 1.7258 22.357 3 0 Median 1.3547 1.1223 7.6761 6 0 Median 389570000 172950000 216620000 126580000 58473000 68110000 108990000 47680000 61314000 84950000 38101000 46849000 53923000 22745000 31177000 4778900 1524700 3254100 10339000 4427500 5911800 8672 2633;3212;1034 9011;9012 43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073;43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090;43091;43092;43093;43094 43093;43094;43095;43096;43097;43098;43099;43100;43101;43102;43103;43104;43105;43106;43107;43108;43109;43110 43103 355 18 FDLNEPLHLSFLQNAAK SLFWQSPKRPPSPIKFDLNEPLHLSFLQNA LNEPLHLSFLQNAAKLYATVYCIPFAEEDL K F D A K L 2 0 2 1 0 1 1 0 1 0 4 1 0 2 1 1 0 0 0 0 0 0 17 0 1956.0105 A0AVT1;H0Y8S8 A0AVT1 747 763 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 3 0.0063446 24.793 By matching By MS/MS By matching 1 1 1 1.0092 0.84838 9.1253 3 Plateau 0.74701 0.74533 NaN 1 0 Median 1.0092 0.8538 NaN 1 0 Median 0.6209 0.71783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14388000 6848000 7539700 2021900 1100200 921670 11636000 5433000 6202700 730180 314780 415400 0 0 0 0 0 0 0 0 0 8673 489 9013 43095;43096;43097 43111;43112 43111 2 FDLNSPWEAFPVYR RVVAEPVELAQEFRKFDLNSPWEAFPVYRQ KFDLNSPWEAFPVYRQPPESLKLEAGDKKP K F D Y R Q 1 1 1 1 0 0 1 0 0 0 1 0 0 2 2 1 0 1 1 1 0 0 14 0 1739.8308 O75489 O75489 233 246 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.00097082 53.683 By MS/MS By matching By matching 1 1 1 0.95919 0.84324 15.677 3 Median 0.7471 0.70464 NaN 1 0 Median 0.98617 0.84324 NaN 1 0 Median 0.95919 0.963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4746900 2506700 2240200 2914600 1651400 1263200 351270 162700 188580 1481000 692570 788440 0 0 0 0 0 0 0 0 0 8674 1678 9014 43098;43099;43100 43113;43114 43114 2 FDLQVEHPYQFLLK EEVMVLERILLQTIKFDLQVEHPYQFLLKY KFDLQVEHPYQFLLKYAKQLKGDKNKIQKL K F D L K Y 0 0 0 1 0 2 1 0 1 0 3 1 0 2 1 0 0 0 1 1 0 0 14 0 1775.9247 O75909;G3V2Q3;G3V5E1 O75909 153 166 CCNK Cyclin-K yes no 3 0.060361 11.27 By matching By matching By MS/MS 1 1 1 0.8335 0.88447 13.717 3 Plateau 0.71323 0.68842 NaN 1 0 Median 0.99348 0.85811 NaN 1 0 Median 0.8335 0.88548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5097800 2746200 2351700 408230 208810 199420 2096200 1040900 1055300 2593400 1496500 1097000 0 0 0 0 0 0 0 0 0 8675 1704 9015 43101;43102;43103 43115 43115 1 FDLSQNHPLGMAIFLK VRCLATHGRFLEIGKFDLSQNHPLGMAIFL DLSQNHPLGMAIFLKNVTFHGVLLDAFFNE K F D L K N 1 0 1 1 0 1 0 1 1 1 3 1 1 2 1 1 0 0 0 0 0 0 16 0 1829.9498 P49327;A0A0U1RQF0 P49327 1772 1787 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 9.001E-07 93.345 By MS/MS By MS/MS By matching 4 6 1 1.0121 1.0283 16.915 11 Median 0.96826 0.96013 12.087 4 0 Median 1.1666 1.2064 21.625 6 0 Linear 0.85969 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46898000 22456000 24442000 19299000 9953600 9345700 26374000 11939000 14435000 1224200 563300 660920 0 0 0 0 0 0 0 0 0 8676 2377 9016 43104;43105;43106;43107;43108;43109;43110;43111;43112;43113;43114 43116;43117;43118;43119;43120;43121;43122 43119 7 FDMAENVVIVASQK EQPQTTKLKGKMQSRFDMAENVVIVASQKR RFDMAENVVIVASQKRPLGGRELQLPSMSM R F D Q K R 2 0 1 1 0 1 1 0 0 1 0 1 1 1 0 1 0 0 0 3 0 0 14 0 1549.781 Q7Z6Z7;H0Y659 Q7Z6Z7 3684 3697 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 6.8256E-05 79.693 By MS/MS 2 1.0603 1.0604 NaN 1 Median 1.0603 1.0604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7924200 3629500 4294700 7924200 3629500 4294700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8677 3253 9017 43115;43116 43123;43124 43124 2 FDNIGMNAMANKDNASLK AEEFGHLLDENMGSKFDNIGMNAMANKDNA IGMNAMANKDNASLKQLRWEAERDDWLHNR K F D L K Q 3 0 4 2 0 0 0 1 0 1 1 2 2 1 0 1 0 0 0 0 0 0 18 1 1952.9084 Q03701 Q03701 994 1011 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.01565 20.6 By MS/MS 1 1.0913 1.2627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0913 1.2627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11533000 5334800 6198100 0 0 0 0 0 0 11533000 5334800 6198100 0 0 0 0 0 0 0 0 0 8678 2710 9018 43117 43125 43125 1 FDNLYGCR KVPAINVNDSVTKSKFDNLYGCRESLIDGI DSVTKSKFDNLYGCRESLIDGIKRATDVMI K F D C R E 0 1 1 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1043.4495 P23526 P23526 189 196 AHCY Adenosylhomocysteinase yes yes 2 0.0074447 67.032 By MS/MS 3 1.5989 1.3779 12.964 3 Plateau NaN NaN NaN 0 0 Median 1.5989 1.3779 12.964 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4415600 1938400 2477100 0 0 0 4415600 1938400 2477100 0 0 0 0 0 0 0 0 0 0 0 0 8679 2116 9019 43118;43119;43120 43126 43126 1 FDNPAAVSPTPTR IRVQVIQSQLPVFTRFDNPAAVSPTPTRQL TRFDNPAAVSPTPTRQLTFNYLLPVNAWLL R F D T R Q 2 1 1 1 0 0 0 0 0 0 0 0 0 1 3 1 2 0 0 1 0 0 13 0 1371.6783 Q6ZXV5;F8VRY4 Q6ZXV5 267 279 TMTC3 Transmembrane and TPR repeat-containing protein 3 yes no 2 0.00024391 91.313 By MS/MS By MS/MS 3 1 0.6571 0.54009 14.516 4 Linear NaN NaN NaN 0 0 Median 0.65504 0.53348 3.5977 3 1 Plateau 0.65729 0.70383 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13631000 7248500 6382500 0 0 0 7919000 4035400 3883600 5712100 3213100 2499000 0 0 0 0 0 0 0 0 0 8680 3204 9020 43121;43122;43123;43124 43127;43128;43129 43128 3 FDNSYSLWR AGSHQYPGRGVYLLKFDNSYSLWRSKSVYY GVYLLKFDNSYSLWRSKSVYYRVYYTR___ K F D W R S 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 0 0 0 9 0 1186.5407 Q9H3P7 Q9H3P7 508 516 ACBD3 Golgi resident protein GCP60 yes yes 2 0.001536 80.438 By MS/MS By matching By matching 1 2 1 1.2596 1.0761 7.3866 4 Median 1.0782 1.0387 NaN 1 0 Median 1.2596 1.0761 4.8583 2 0 Median NaN NaN NaN 0 0 Median 1.3905 1.2142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8899100 4399000 4500100 6596400 3336000 3260500 2229900 1035000 1194800 0 0 0 72814 27999 44815 0 0 0 0 0 0 8681 3957 9021 43125;43126;43127;43128 43130 43130 1 FDPVRVDITSK PSGSYVVEVVSPAYRFDPVRVDITSKGKMR PAYRFDPVRVDITSKGKMRARYVNYIKTSE R F D S K G 0 1 0 2 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 2 0 0 11 1 1275.6823 Q9NPA0;H0YDX2 Q9NPA0 105 115 EMC7 ER membrane protein complex subunit 7 yes no 3 0.024508 24.254 By MS/MS By matching 1 2 1.0584 0.93455 21.896 3 Median 0.72226 0.75759 NaN 1 0 Median 1.1519 1.0473 16.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7270500 3941000 3329500 4962500 2946100 2016400 2308000 994920 1313000 0 0 0 0 0 0 0 0 0 0 0 0 8682 4044 9022 43129;43130;43131 43131 43131 1 FDPYEHEALFHTPVEGK FTKHGLLKLNPVGAKFDPYEHEALFHTPVE PYEHEALFHTPVEGKEPGTVALVSKVGYKL K F D G K E 1 0 0 1 0 0 3 1 2 0 1 1 0 2 2 0 1 0 1 1 0 0 17 0 2014.9425 Q9HAV7 Q9HAV7 170 186 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 3;4 0.00015448 40.724 By MS/MS By MS/MS 2 2 1.1333 1.0108 20.386 4 Median 1.0387 0.96814 3.5189 2 0 Median 1.4518 1.2328 25.503 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23570000 11549000 12021000 19224000 9669800 9554400 4346000 1879200 2466800 0 0 0 0 0 0 0 0 0 0 0 0 8683 4013 9023 43132;43133;43134;43135 43132;43133;43134 43133 3 FDQKQELGR KYKRIKKPEGKPDQKFDQKQELGRVIHLSN GKPDQKFDQKQELGRVIHLSNLPHSGYSDS K F D G R V 0 1 0 1 0 2 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1119.5673 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87;D6RBK5 P43243 488 496 MATR3 Matrin-3 yes no 2 0.047453 62.546 By MS/MS 1 0.44458 0.489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44458 0.489 NaN 1 1 Median NaN NaN NaN 0 0 Median 9977100 7553800 2423400 0 0 0 0 0 0 0 0 0 0 0 0 9977100 7553800 2423400 0 0 0 8684 297 9024 43136 43135 43135 1 FDQLFDDESDPFEVLK PGHLQEGFGCVVTNRFDQLFDDESDPFEVL DQLFDDESDPFEVLKAAENKKKEAGGGGVG R F D L K A 0 0 0 4 0 1 2 0 0 0 2 1 0 3 1 1 0 0 0 1 0 0 16 0 1942.8836 Q8NC51 Q8NC51 17 32 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.041958 23.118 By matching By MS/MS By MS/MS 1 1 1 0.89511 0.86441 7.6657 3 Plateau 0.82728 0.81019 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89511 0.92227 NaN 1 0 Median 0.92906 0.8052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4276300 2166200 2110200 1398000 760360 637600 0 0 0 2032900 950570 1082400 845430 455220 390200 0 0 0 0 0 0 8685 3414 9025 43137;43138;43139 43136;43137 43137 2 FDQLLAEEK HQRQSACNLEKKQKKFDQLLAEEKTISAKY EKKQKKFDQLLAEEKTISAKYAEERDRAEA K F D E K T 1 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 P35579;Q7Z406;A0A0C4DFM8;A1L2Z2;P35580 P35579 1446 1454 MYH9;MYH14;MYH10 Myosin-9;Myosin-14;Myosin-10 no no 2 0.0007337 93.598 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1.3525 1.2611 20.198 6 Median 1.6478 1.5767 NaN 1 1 Median 1.2603 1.1157 NaN 1 0 Median 0.74459 0.89249 NaN 1 0 Median 1.6109 1.457 NaN 1 0 Median 1.2217 1.2786 NaN 1 1 Median 1.4514 1.2438 NaN 1 0 Median 94223000 41305000 52918000 41440000 17161000 24279000 26644000 11790000 14853000 12315000 6623300 5692200 2467100 716800 1750300 9526500 4307200 5219300 1830600 706980 1123700 8686 2244;2245;3242 9026 43140;43141;43142;43143;43144;43145 43138;43139;43140;43141;43142;43143 43138 6 FDQLNIQR VKSLINKKDLQRLLKFDQLNIQRTQKKAFV DLQRLLKFDQLNIQRTQKKAFVDFNEGEIK K F D Q R T 0 1 1 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1032.5352 Q01968;A0A2R8YG38;A0A2R8YCN4 Q01968 450 457 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 2 0.064877 47.067 By MS/MS 1 1.1613 0.98892 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1613 0.98892 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 512140 214550 297590 0 0 0 0 0 0 0 0 0 512140 214550 297590 0 0 0 0 0 0 8687 2694 9027 43146 43144 43144 1 FDQPLEASTWLK KNCRDLLQSSYNKQRFDQPLEASTWLKNFK KQRFDQPLEASTWLKNFKTTNERFLNQIKV R F D L K N 1 0 0 1 0 1 1 0 0 0 2 1 0 1 1 1 1 1 0 0 0 0 12 0 1433.7191 P51398;V9GZ03;V9GYL9;V9GYJ9;V9GY11;V9GYJ3 P51398 178 189 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 0.0018171 50.284 By MS/MS By matching 1 1 0.88364 0.79188 6.4387 2 Median 0.88805 0.82877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87925 0.75664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4731600 2505100 2226400 4584700 2421300 2163400 0 0 0 0 0 0 146870 83841 63027 0 0 0 0 0 0 8688 2431 9028 43147;43148 43145 43145 1 FDSDAASPR RFISVGYVDDTQFVRFDSDAASPREEPRAP DTQFVRFDSDAASPREEPRAPWIEQEGPEY R F D P R E 2 1 0 2 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 9 0 964.42502 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A140T9L3;A0A140TA05;A0A140T942;A0A140T9E1;A0A140T9T1;A0A140TA12;F8W9Z8;A0A140T9Z7;A0A140TA03;A0A1W2PPR8;P01889;F6U0H7;A0A140TA21;A0A140T9D4 A0A1W2PPR8 60 68 HLA-C;HLA-B HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 2 0.0032081 66.692 By MS/MS 1 1.1318 0.96935 NaN 1 Median NaN NaN NaN 0 0 Median 1.1318 0.96935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1273900 609900 663960 0 0 0 1273900 609900 663960 0 0 0 0 0 0 0 0 0 0 0 0 8689 314;339 9029 43149 43146;43147 43147 2 FDSDAASQR RFIAVGYVDDTQFVRFDSDAASQRMEPRAP DTQFVRFDSDAASQRMEPRAPWIEQEGPEY R F D Q R M 2 1 0 2 0 1 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 9 0 995.43084 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24 P04439 60 68 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain no no 2 0.01801 56.729 By MS/MS 1 1.1355 0.97342 NaN 1 Median NaN NaN NaN 0 0 Median 1.1355 0.97342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1230600 469580 761050 0 0 0 1230600 469580 761050 0 0 0 0 0 0 0 0 0 0 0 0 8690 348 9030 43150 43148 43148 1 FDSEPSAVALELPTR HDDGNIDLESDSFLKFDSEPSAVALELPTR FDSEPSAVALELPTRAFGPSETNESPAVVL K F D T R A 2 1 0 1 0 0 2 0 0 0 2 0 0 1 2 2 1 0 0 1 0 0 15 0 1630.8203 P18583 P18583 158 172 SON Protein SON yes yes 2 3.167E-06 90.653 By MS/MS By MS/MS By matching 1 1 1 0.74731 0.85746 20.112 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84383 0.91728 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67324 0.71525 NaN 1 0 Median 0.74731 0.61602 NaN 1 0 Median 6314700 3728700 2585900 0 0 0 0 0 0 3753600 2089100 1664500 0 0 0 2138500 1416300 722250 422490 223300 199200 8691 2058 9031 43151;43152;43153 43149;43150 43149 2 FDSEYER RDDSFFGETSHNYHKFDSEYERMGRGPGPL ETSHNYHKFDSEYERMGRGPGPLQERSLFE K F D E R M 0 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 7 0 944.38758 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 246 252 MATR3 Matrin-3 yes no 2 0.0017134 110.63 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 4 3 1.1374 1.0582 8.6048 11 Median NaN NaN NaN 0 0 Median 1.2898 1.0774 NaN 1 0 Median 1.0457 1.1061 14.057 2 1 Median 1.2632 1.0744 NaN 1 0 Median 0.99621 1.037 10.186 4 0 Median 1.2022 0.97693 4.8179 3 0 Median 61099000 29027000 32072000 0 0 0 11814000 5172300 6641500 10547000 5150800 5395800 3086600 1378400 1708100 30616000 15155000 15461000 5036600 2170500 2866100 8692 297 9032 43154;43155;43156;43157;43158;43159;43160;43161;43162;43163;43164 43151;43152;43153;43154;43155;43156;43157;43158;43159;43160;43161 43156 11 FDSNNVVLIEDNGNPVGTR LIVGHCMPGPRMTPRFDSNNVVLIEDNGNP NVVLIEDNGNPVGTRIKTPIPTSLRKREGE R F D T R I 0 1 4 2 0 0 1 2 0 1 1 0 0 1 1 1 1 0 0 3 0 0 19 0 2058.997 Q6P1L8 Q6P1L8 100 118 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 2 3.8745E-08 82.55 By MS/MS By matching By MS/MS 1 1 1 0.87253 0.88548 15.718 3 Median 0.75754 0.75896 NaN 1 0 Median 1.2328 1.0393 NaN 1 0 Median 0.87253 0.88548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8495800 4474300 4021500 2926100 1555500 1370600 385340 164650 220690 5184400 2754200 2430200 0 0 0 0 0 0 0 0 0 8693 3151 9033 43165;43166;43167 43162;43163;43164;43165 43165 4 FDSSLDR RVFVHYTGWLLDGTKFDSSLDRKDKFSFDL GWLLDGTKFDSSLDRKDKFSFDLGKGEVIK K F D D R K 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 7 0 838.3821 Q02790;F5H1U3 Q02790 67 73 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0028859 119.57 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0507 0.98659 9.1773 4 Median 1.0476 1.0394 NaN 1 0 Median 1.0538 0.88726 NaN 1 0 Median 1.0379 1.0825 NaN 1 0 Median 1.0728 0.93644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11605000 5487800 6117400 1455500 715990 739490 9007200 4253400 4753800 755250 347850 407400 387230 170580 216650 0 0 0 0 0 0 8694 2701 9034 43168;43169;43170;43171 43166;43167;43168;43169 43169 4 FDSSLDRK RVFVHYTGWLLDGTKFDSSLDRKDKFSFDL WLLDGTKFDSSLDRKDKFSFDLGKGEVIKA K F D R K D 0 1 0 2 0 0 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 1 966.47706 Q02790;F5H1U3 Q02790 67 74 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0032866 109.86 By MS/MS By MS/MS By matching 1 1 1 1.1221 1.124 11.685 3 Median 1.1221 1.124 NaN 1 0 Median 1.0965 1.001 NaN 1 0 Median 1.1485 1.2646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8929800 4081100 4848700 3218900 1520300 1698600 5397000 2410100 2987000 313910 150820 163100 0 0 0 0 0 0 0 0 0 8695 2701 9035 43172;43173;43174 43170;43171;43172 43172 3 FDSSYDRDSTFNVFVGK FVRYHYVGTFPDGQKFDSSYDRDSTFNVFV SSYDRDSTFNVFVGKGQLITGMDQALVGMC K F D G K G 0 1 1 3 0 0 0 1 0 0 0 1 0 3 0 3 1 0 1 2 0 0 17 1 1982.901 O95302 O95302 71 87 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9 yes yes 3 0.052487 20.65 By MS/MS 1 0.86578 0.86935 NaN 1 Median 0.86578 0.86935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6460700 3192500 3268300 6460700 3192500 3268300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8696 1763 9036 43175 43173 43173 1 FDSVGGLSNHIAALK SLADVDPMQLDSSVRFDSVGGLSNHIAALK FDSVGGLSNHIAALKEMVVFPLLYPEVFEK R F D L K E 2 0 1 1 0 0 0 2 1 1 2 1 0 1 0 2 0 0 0 1 0 0 15 0 1527.8045 Q6PL18 Q6PL18 425 439 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.00035612 64.374 By MS/MS By matching 1 2 0.82812 0.86677 37.927 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82812 0.86677 NaN 1 0 Median 1.0893 0.92827 53.344 2 0 Median 10466000 5329900 5135900 0 0 0 0 0 0 0 0 0 0 0 0 9881500 5076700 4804800 584300 253110 331180 8697 3177 9037 43176;43177;43178 43174 43174 1 FDTEEEFK PIGDLQVFYKESKKRFDTEEEFKKRAYQCV YKESKKRFDTEEEFKKRAYQCVVLLQGKNP R F D F K K 0 0 0 1 0 0 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 8 0 1043.4448 P54136 P54136 280 287 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0055363 75.213 By MS/MS 1 1.2847 1.0924 NaN 1 Median NaN NaN NaN 0 0 Median 1.2847 1.0924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4672600 2123600 2549000 0 0 0 4672600 2123600 2549000 0 0 0 0 0 0 0 0 0 0 0 0 8698 2480 9038 43179 43175;43176 43176 2 FDTEEEFKKR PIGDLQVFYKESKKRFDTEEEFKKRAYQCV ESKKRFDTEEEFKKRAYQCVVLLQGKNPDI R F D K R A 0 1 0 1 0 0 3 0 0 0 0 2 0 2 0 0 1 0 0 0 0 0 10 2 1327.6408 P54136 P54136 280 289 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.00015353 74.162 By MS/MS 1 0.82698 0.89525 NaN 1 Median 0.82698 0.89525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4081400 2470600 1610700 4081400 2470600 1610700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8699 2480 9039 43180 43177;43178 43177 2 FDTGNLCMVTGGANLGR IQIDLETGKITDFIKFDTGNLCMVTGGANL TGNLCMVTGGANLGRIGVITNRERHPGSFD K F D G R I 1 1 2 1 1 0 0 4 0 0 2 0 1 1 0 0 2 0 0 1 0 0 17 0 1781.8189 P62701 P62701 175 191 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 7.9712E-12 131.69 By MS/MS By MS/MS By MS/MS 1 3 1 1.122 1.0133 6.9882 5 Median 1.0602 0.99188 NaN 1 0 Median 1.2143 1.0133 6.4581 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.122 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median 37818000 17273000 20545000 22368000 10231000 12137000 11795000 5400300 6395000 0 0 0 0 0 0 3654200 1641600 2012500 0 0 0 8700 2593 9040 43181;43182;43183;43184;43185 43179;43180;43181;43182;43183 43180 5 FDTQYPYGEK TFYKVIPKSKFVLVKFDTQYPYGEKQDEFK FVLVKFDTQYPYGEKQDEFKRLAENSASSD K F D E K Q 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 1 0 2 0 0 0 10 0 1246.5506 P30040;F8W1G0 P30040 60 69 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 0.0031947 57.598 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0053 0.91384 4.2744 4 Median 1.0083 0.93635 NaN 1 0 Median 1.0024 0.8497 NaN 1 1 Median 0.96406 0.90522 NaN 1 0 Median 1.1183 0.92255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31095000 20688000 10407000 19658000 14664000 4993800 2123900 1107700 1016200 8598100 4592800 4005300 715140 323590 391550 0 0 0 0 0 0 8701 2178 9041 43186;43187;43188;43189 43184;43185;43186;43187;43188;43189 43186 6 FDTQYPYGEKQDEFKR TFYKVIPKSKFVLVKFDTQYPYGEKQDEFK DTQYPYGEKQDEFKRLAENSASSDDLLVAE K F D K R L 0 1 0 2 0 2 2 1 0 0 0 2 0 2 1 0 1 0 2 0 0 0 16 2 2049.9432 P30040;F8W1G0 P30040 60 75 ERP29 Endoplasmic reticulum resident protein 29 yes no 3;4 1.8848E-07 93.424 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.2276 1.1026 17.754 7 Median 1.2509 1.3319 21.054 2 2 Median 1.2495 1.0833 2.4943 2 0 Median 0.93628 1.0483 NaN 1 0 Median 1.1898 0.98138 20.727 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75520000 31053000 44467000 48426000 18679000 29747000 18309000 8037600 10271000 4205100 1998200 2206900 4580200 2337800 2242400 0 0 0 0 0 0 8702 2178 9042 43190;43191;43192;43193;43194;43195;43196 43190;43191;43192;43193;43194;43195;43196;43197 43191 8 FDVINLAAEK PVVDEKGRVVDIYSKFDVINLAAEKTYNNL DIYSKFDVINLAAEKTYNNLDVSVTKALQH K F D E K T 2 0 1 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1118.5972 F8VYY9;P54619;H0YHF8;A0A494C068;E9PGP6;A0A494C123;A0A494C1K7;Q9UGJ0 F8VYY9 193 202 PRKAG1;PRKAG2 5-AMP-activated protein kinase subunit gamma-1;5-AMP-activated protein kinase subunit gamma-2 yes no 2 0.0014621 65.305 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0057 0.94574 8.68 4 Median 1.008 0.94157 NaN 1 0 Median 1.2545 1.0572 NaN 1 0 Median 0.8945 0.85496 NaN 1 0 Median 1.0035 0.94994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12745000 5838200 6907300 7903900 3548800 4355000 1908500 727930 1180500 2740000 1459600 1280300 193170 101820 91346 0 0 0 0 0 0 8703 1076 9043 43197;43198;43199;43200 43198;43199 43198 2 FDVNTSAVQVLIEHIGNLDR ISNELFEEAFAIFRKFDVNTSAVQVLIEHI SAVQVLIEHIGNLDRAYEFAERCNEPAVWS K F D D R A 1 1 2 2 0 1 1 1 1 2 2 0 0 1 0 1 1 0 0 3 0 0 20 0 2239.1597 A0A087WVQ6;Q00610 A0A087WVQ6 1079 1098 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.0094427 21.398 By MS/MS 1 1.2301 1.0499 NaN 1 Median NaN NaN NaN 0 0 Median 1.2301 1.0499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7272900 3204100 4068800 0 0 0 7272900 3204100 4068800 0 0 0 0 0 0 0 0 0 0 0 0 8704 44 9044 43201 43200 43200 1 FDVPGDENAEMDAR EALAKTEVSLTLTNKFDVPGDENAEMDART KFDVPGDENAEMDARTILLNTKRLIVDVIR K F D A R T 2 1 1 3 0 0 2 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 14 0 1564.6464 P46940;H0YLE8 P46940 1369 1382 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 1.1704E-06 97.452 By MS/MS By MS/MS 1 4 0.98677 0.89438 9.6698 5 Median 0.98677 0.92625 NaN 1 0 Median 0.98362 0.85012 10.365 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25814000 13345000 12468000 10652000 5691700 4960300 15162000 7653700 7508100 0 0 0 0 0 0 0 0 0 0 0 0 8705 2350 9045;9046 43202;43203;43204;43205;43206 43201;43202;43203;43204;43205 43201 1074 5 FDVQLKDLEK NLTGRLNKCGVISPRFDVQLKDLEKWQNNL VISPRFDVQLKDLEKWQNNLLPSRQFG___ R F D E K W 0 0 0 2 0 1 1 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 10 1 1233.6605 I3L3P7;P62244;H3BVC7 I3L3P7 79 88 RPS15A 40S ribosomal protein S15a yes no 2 0.0017229 123.86 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.0798 0.97435 24.513 5 Median 0.98593 0.97435 NaN 1 0 Median 1.107 0.95968 NaN 1 0 Median 0.75664 0.76129 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0798 1.0808 NaN 1 0 Median 1.7421 1.4945 NaN 1 0 Median 222530000 112800000 109730000 162660000 83170000 79493000 22751000 10941000 11810000 25686000 12627000 13059000 0 0 0 8986000 5090400 3895700 2443500 969170 1474300 8706 1289 9047 43207;43208;43209;43210;43211;43212 43206;43207;43208;43209;43210 43207 5 FDVSGYPTLK LAKVDATAETDLAKRFDVSGYPTLKIFRKG DLAKRFDVSGYPTLKIFRKGRPYDYNGPRE R F D L K I 0 0 0 1 0 0 0 1 0 0 1 1 0 1 1 1 1 0 1 1 0 0 10 0 1125.5706 P13667;A0A499FI48 P13667 247 256 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00034968 90.15 By MS/MS By MS/MS By MS/MS By matching 4 3 1 1 0.87071 0.77392 27.353 9 Median 0.80579 0.74817 12.078 4 0 Median 1.185 1.0357 42.441 3 0 Median 0.89905 0.90363 NaN 1 0 Median 1.3042 1.1328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91126000 46275000 44851000 60615000 31775000 28840000 12987000 6067400 6919700 16063000 7740800 8322600 1460600 692220 768420 0 0 0 0 0 0 8707 1993 9048 43213;43214;43215;43216;43217;43218;43219;43220;43221 43211;43212;43213;43214;43215;43216;43217;43218;43219 43214 9 FDYAFDDSAPNEMVYR QKVDLTRYLENQTFRFDYAFDDSAPNEMVY DYAFDDSAPNEMVYRFTARPLVETIFERGM R F D Y R F 2 1 1 3 0 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 16 0 1938.8094 O00139;D6R9M0 O00139 276 291 KIF2A Kinesin-like protein KIF2A no no 2 2.7209E-10 107.85 By MS/MS By MS/MS By matching 2 1 2 0.97708 0.88265 12.032 5 Median 0.90632 0.89514 22.487 2 0 Median NaN NaN NaN 0 0 Median 0.87263 0.93679 NaN 1 0 Median 0.99912 0.85673 4.2152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8976400 4419600 4556900 5412300 2725800 2686500 0 0 0 2880500 1392700 1487800 683680 301070 382610 0 0 0 0 0 0 8708 1440;804 9049 43222;43223;43224;43225;43226 43220;43221;43222;43223 43220 4 FDYSGVGSSDGNSEESTLGK AIEEFCKSLGHACIRFDYSGVGSSDGNSEE VGSSDGNSEESTLGKWRKDVLSIIDDLADG R F D G K W 0 0 1 2 0 0 2 4 0 0 1 1 0 1 0 5 1 0 1 1 0 0 20 0 2034.8654 Q9NUJ1 Q9NUJ1 110 129 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2 1.2916E-10 95.651 By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 1.228 1.1112 8.586 6 Median 1.0748 1.0222 10.202 2 0 Median 1.3369 1.1238 NaN 1 0 Median 1.0543 0.98837 NaN 1 0 Median 1.3858 1.1631 0.00021376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33176000 14870000 18306000 8227900 3819200 4408600 4982300 2055600 2926700 18622000 8458300 10164000 1344400 537190 807190 0 0 0 0 0 0 8709 4115 9050 43227;43228;43229;43230;43231;43232 43224;43225;43226;43227;43228 43225 5 FDYVMQFLNK VVTSLIKQGVNNAEKFDYVMQFLNKMAGNE NNAEKFDYVMQFLNKMAGNEYVGFSNATFQ K F D N K M 0 0 1 1 0 1 0 0 0 0 1 1 1 2 0 0 0 0 1 1 0 0 10 0 1303.6271 O94925 O94925 355 364 GLS Glutaminase kidney isoform, mitochondrial yes yes 2 0.0041692 54.157 By MS/MS 1 1.6512 1.4135 NaN 1 Median NaN NaN NaN 0 0 Median 1.6512 1.4135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2633900 1423900 1210000 0 0 0 2633900 1423900 1210000 0 0 0 0 0 0 0 0 0 0 0 0 8710 1738 9051 43233 43229 43229 1 FEAAETLEEAAMR TTLKNLGALYRRQGKFEAAETLEEAAMRSR GKFEAAETLEEAAMRSRKQGLDNVHKQRVA K F E M R S 4 1 0 0 0 0 4 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 13 0 1466.6711 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;H0YJU9;H0YJL0;H0YJT3;H0YG16 G5E9S8 478 490 KLC1 Kinesin light chain 1 yes no 2 2.7171E-05 93.058 By MS/MS 1 0.76041 0.74982 NaN 1 Median 0.76041 0.74982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3579400 1868300 1711100 3579400 1868300 1711100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8711 896 9052 43234 43230 43230 1 FEAGQFEPSETTAK KYFDKRRDYLKFKEKFEAGQFEPSETTAKS KFEAGQFEPSETTAKS______________ K F E A K S 2 0 0 0 0 1 3 1 0 0 0 1 0 2 1 1 2 0 0 0 0 0 14 0 1540.7046 Q5JTJ3 Q5JTJ3 111 124 COA6 Cytochrome c oxidase assembly factor 6 homolog yes yes 2 0.0013598 63.408 By MS/MS 1 0.87711 0.84765 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87711 0.84765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5164600 2711600 2452900 0 0 0 0 0 0 5164600 2711600 2452900 0 0 0 0 0 0 0 0 0 8712 3053 9053 43235 43231 43231 1 FEAHPNDLYVEGLPENIPFR EALGSTEAKAVPYQKFEAHPNDLYVEGLPE NDLYVEGLPENIPFRSPSWYGIPRLEKIIQ K F E F R S 1 1 2 1 0 0 3 1 1 1 2 0 0 2 3 0 0 0 1 1 0 0 20 0 2356.1488 P78347;A0A494C1K3;A0A494C0Q7 P78347 495 514 GTF2I General transcription factor II-I yes no 2;3 2.1947E-14 105.67 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 7 1 1 0.60268 0.58048 22.791 12 Median 0.83833 0.82589 NaN 1 0 Median 0.60657 0.55976 9.4319 2 0 Median 0.54334 0.64363 27.05 7 0 Median 0.65356 0.55839 NaN 1 0 Median 0.53186 0.56312 NaN 1 1 Median NaN NaN NaN 0 0 Median 74092000 49896000 24195000 2266900 1230300 1036500 1467100 726170 740950 66709000 45564000 21145000 809790 456340 353450 2839300 1919800 919550 0 0 0 8713 2642 9054 43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247 43232;43233;43234;43235;43236;43237;43238;43239;43240;43241 43235 10 FEALNLSFK GKLYGNDFSQTTISRFEALNLSFKNMCKLK QTTISRFEALNLSFKNMCKLKPLLEKWLND R F E F K N 1 0 1 0 0 0 1 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 9 0 1067.5651 P14859;A0A0C4DG88;A0A0A0MT46;Q9UKI9;H0YLC5;U3KQ96;U3KQN1;H0YNW1;H0YLL6;B5ME60;H0YKT2;P09086 P14859 329 337 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain protein;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2 yes no 2 0.0049967 58.981 By MS/MS By matching 3 2 1.1819 1.0772 15.908 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98081 1.0772 20.257 3 0 Median 1.2877 1.1327 13.826 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11778000 5921100 5857100 0 0 0 0 0 0 10356000 5321600 5034300 1422300 599460 822790 0 0 0 0 0 0 8714 2010 9055 43248;43249;43250;43251;43252 43242 43242 1 FEAPLFNAR VEEADVVLLVGTNPRFEAPLFNARIRKSWL VGTNPRFEAPLFNARIRKSWLHNDLKVALI R F E A R I 2 1 1 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 9 0 1063.5451 P28331;B4DJ81 P28331 409 417 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0005301 117.17 By MS/MS By MS/MS By matching By matching 2 1 1 2 0.75493 0.74249 25.676 6 Median 0.75493 0.72846 11.774 2 0 Median NaN NaN NaN 0 0 Median 0.66411 0.69633 NaN 1 0 Median 0.99856 0.84357 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67772 0.58524 46.39 2 0 Median 16562000 9402500 7159400 10415000 5875100 4539600 0 0 0 5078600 2997600 2081000 355760 161290 194470 0 0 0 712820 368510 344310 8715 2165 9056 43253;43254;43255;43256;43257;43258 43243;43244;43245 43243 3 FEDEDSDDVPR SVKRKKLPVDSVFNKFEDEDSDDVPRKRKL VFNKFEDEDSDDVPRKRKLVPLDYGEDDKN K F E P R K 0 1 0 4 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 11 0 1322.5263 P49756 P49756 698 708 RBM25 RNA-binding protein 25 yes yes 2 0.00011336 140.75 By MS/MS By MS/MS 2 1 0.88794 0.78337 15.226 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57459 0.62171 6.9348 2 0 Median 0.94004 0.79803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10552000 5478700 5073700 0 0 0 0 0 0 4973300 2968100 2005200 5579100 2510600 3068500 0 0 0 0 0 0 8716 2397 9057 43259;43260;43261 43246;43247;43248 43247 3 FEDENFILK TRHNGTGGKSIYGEKFEDENFILKHTGPGI SIYGEKFEDENFILKHTGPGILSMANAGPN K F E L K H 0 0 1 1 0 0 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 9 0 1153.5655 P62937;F8WE65;C9J5S7 P62937 83 91 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0005606 114.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 2 3 1.209 0.99405 18.583 11 Median 1.0636 0.99405 NaN 1 0 Median 1.2487 1.063 NaN 1 0 Median 1.0849 1.0127 31.187 4 0 Median 1.2324 1.0109 4.2961 2 0 Median NaN NaN NaN 0 0 Median 1.3081 0.98344 6.8629 3 0 Plateau 847050000 384590000 462470000 180980000 82750000 98229000 58219000 24527000 33692000 575950000 263330000 312620000 11917000 5157300 6759700 0 0 0 19987000 8825500 11161000 8717 2611 9058 43262;43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273 43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264;43265;43266;43267;43268 43268 20 FEDHEGLPTVVK SDALRDNILPELGVRFEDHEGLPTVVKLVD GVRFEDHEGLPTVVKLVDRNTLLKEREEKR R F E V K L 0 0 0 1 0 0 2 1 1 0 1 1 0 1 1 0 1 0 0 2 0 0 12 0 1369.6878 P49589;B4DKY1 P49589 629 640 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2;3 0.0047204 63.076 By MS/MS By matching By MS/MS 1 1 2 0.80172 0.69989 103.49 4 Median 1.0089 0.98478 NaN 1 0 Median 0.73566 0.64602 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.32099 0.27803 141.89 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28161000 23497000 4663600 2712100 1849300 862740 3378200 1890300 1487900 0 0 0 22070000 19758000 2313000 0 0 0 0 0 0 8718 2386 9059 43274;43275;43276;43277 43269;43270;43271 43271 3 FEDKTVAYTEQK GEGIILFRPSHLTNKFEDKTVAYTEQKMTS TNKFEDKTVAYTEQKMTSGKIKKFIQENIF K F E Q K M 1 0 0 1 0 1 2 0 0 0 0 2 0 1 0 0 2 0 1 1 0 0 12 1 1457.7038 P30101 P30101 215 226 PDIA3 Protein disulfide-isomerase A3 yes yes 3 0.0016023 42.095 By MS/MS 1 1.0319 0.99513 NaN 1 Median 1.0319 0.99513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2445800 1249300 1196500 2445800 1249300 1196500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8719 2189 9060 43278 43272 43272 1 FEDLEVSTFER VDMLVNCAGMAVSGKFEDLEVSTFERLMSI VSGKFEDLEVSTFERLMSINYLGSVYPSRA K F E E R L 0 1 0 1 0 0 3 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 11 0 1370.6354 K7ERC8;Q06136 K7ERC8 130 140 KDSR 3-ketodihydrosphingosine reductase yes no 2 0.011012 38.303 By MS/MS 1 1.4274 1.212 NaN 1 Median NaN NaN NaN 0 0 Median 1.4274 1.212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1289300 453710 835580 0 0 0 1289300 453710 835580 0 0 0 0 0 0 0 0 0 0 0 0 8720 1397 9061 43279 43273 43273 1 FEDLLSPAEYEALQSPSEAFR PPCYDDAAKPEDVYKFEDLLSPAEYEALQS PAEYEALQSPSEAFRNVTSEEILKMIEENS K F E F R N 3 1 0 1 0 1 4 0 0 0 3 0 0 2 2 3 0 0 1 0 0 0 21 0 2398.1329 Q9GZS1 Q9GZS1 216 236 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2;3 6.9032E-06 40.025 By MS/MS 2 0.62535 0.62867 4.79 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62535 0.62867 4.79 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6749600 3924700 2825000 0 0 0 0 0 0 6749600 3924700 2825000 0 0 0 0 0 0 0 0 0 8721 3913 9062 43280;43281 43274;43275;43276;43277 43275 4 FEDPRDAEDAIYGR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN RFEDPRDAEDAIYGRNGYDYGQCRLRVEFP R F E G R N 2 2 0 3 0 0 2 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 14 1 1652.7431 Q13242;H0YIB4;S4R3G0 Q13242 59 72 SRSF9 Serine/arginine-rich splicing factor 9 yes no 3 0.00042012 49.31 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.0803 1.0463 16.536 6 Median NaN NaN NaN 0 0 Median 1.5552 1.4403 NaN 1 0 Median 1.1634 1.2063 NaN 1 0 Median 1.1795 1.0561 NaN 1 0 Median 0.92653 1.0229 1.8769 2 0 Median 1.0032 0.89364 NaN 1 0 Median 14146000 6616600 7528900 0 0 0 903270 368260 535010 4378600 2033400 2345300 453280 178930 274340 6849000 3350400 3498600 1561300 685630 875690 8722 2799 9063 43282;43283;43284;43285;43286;43287 43278;43279;43280 43279 3 FEDSPSYVK ELLTESSKATNVCTRFEDSPSYVKWGKLRD TNVCTRFEDSPSYVKWGKLRDYQVRGLNWL R F E V K W 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 1 0 0 9 0 1070.492 O60264 O60264 168 176 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.001584 79.906 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1133 1.028 43.6 5 Median NaN NaN NaN 0 0 Median 2.6897 2.5209 NaN 1 0 Median 0.81024 0.87577 NaN 1 0 Median 1.5895 1.3644 NaN 1 0 Median 0.98047 1.028 NaN 1 1 Median 1.1133 0.91568 NaN 1 1 Median 24306000 11156000 13150000 0 0 0 6787600 2237000 4550700 5642500 3169500 2473000 3357900 794580 2563300 4958100 2737600 2220500 3559600 2217300 1342300 8723 1608 9064 43288;43289;43290;43291;43292 43281;43282;43283;43284;43285;43286 43282 6 FEDVVNQSSPK PAPKSTQENNTKQLRFEDVVNQSSPKNCTV KQLRFEDVVNQSSPKNCTVYCGGIASGLTD R F E P K N 0 0 1 1 0 1 1 0 0 0 0 1 0 1 1 2 0 0 0 2 0 0 11 0 1248.5986 Q01085 Q01085 193 203 TIAL1 Nucleolysin TIAR yes yes 2 0.00011283 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1 2 1.0359 0.92918 41.222 11 Median 1.7027 1.713 90.223 2 0 Median 0.84247 0.7265 NaN 1 0 Median 0.87867 0.90704 14.311 3 0 Median 1.099 0.95985 4.5934 2 0 Median 1.0359 1.0308 NaN 1 0 Median 1.0139 0.83742 28.365 2 0 Median 68187000 33308000 34879000 6897500 2380200 4517400 2350500 1278700 1071900 35511000 17583000 17929000 13649000 6956000 6693000 4510400 2486900 2023500 5268000 2623100 2644800 8724 2682 9065 43293;43294;43295;43296;43297;43298;43299;43300;43301;43302;43303 43287;43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301;43302;43303;43304 43297 18 FEDYLNAESR NSNCWQPVIDYIDSKFEDYLNAESRVNRRQ YIDSKFEDYLNAESRVNRRQMPDNRVQCCL K F E S R V 1 1 1 1 0 0 2 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1242.5517 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1 E7ES33 118 127 SEPT7 Septin-7 yes no 2 2.8657E-11 180.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 3 4 1 2 1.2027 1.0649 21.496 12 Median 0.97644 0.95755 NaN 1 0 Median 1.2089 1.0256 NaN 1 0 Median 0.9872 0.93968 13.72 3 1 Median 1.4757 1.286 22.425 4 1 Median 0.716 0.71758 NaN 1 0 Median 1.3557 1.1335 3.5082 2 0 Median 686170000 324230000 361950000 5161700 2922700 2238900 4767400 2577900 2189500 311430000 154820000 156610000 356930000 160230000 196700000 4482700 2316200 2166500 3400500 1355900 2044500 8725 870 9066 43304;43305;43306;43307;43308;43309;43310;43311;43312;43313;43314;43315 43305;43306;43307;43308;43309;43310;43311;43312;43313;43314;43315;43316 43307 12 FEEAPDYMYLR PAEFAMYLNYCRGLRFEEAPDYMYLRQLFR RGLRFEEAPDYMYLRQLFRILFRTLNHQYD R F E L R Q 1 1 0 1 0 0 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 11 0 1432.6333 U3KPX3;A0A590UJ43;P48729;D6REM4;E7ETM0;H0Y9X2;U3KQK7 U3KPX3 299 309 CSNK1A1 Casein kinase I isoform alpha yes no 2 0.012181 57.598 By MS/MS By MS/MS 1 1 0.83229 0.77398 19.938 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67985 0.6722 NaN 1 1 Median 1.0189 0.89116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4559200 2799000 1760100 0 0 0 0 0 0 3903700 2492500 1411200 655410 306490 348920 0 0 0 0 0 0 8726 481 9067;9068 43316;43317 43317;43318 43317 202 2 FEEAVEK IQRLQLCYQLTTVGKFEEAVEKFRSILLSV YQLTTVGKFEEAVEKFRSILLSVPLLVVDN K F E E K F 1 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 7 0 850.40725 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1022 1028 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0045446 100.19 By MS/MS 1 1.1358 0.95927 NaN 1 Median NaN NaN NaN 0 0 Median 1.1358 0.95927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15528000 6718400 8809300 0 0 0 15528000 6718400 8809300 0 0 0 0 0 0 0 0 0 0 0 0 8727 2473 9069 43318 43319;43320 43320 2 FEEEELQR MDLVGLGLHPLFSSRFEEEELQRLRLVDSI HPLFSSRFEEEELQRLRLVDSIKNYRSRAT R F E Q R L 0 1 0 0 0 1 4 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1078.4931 Q8TDD1;H0YHH7 Q8TDD1 552 559 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 1.4988E-09 177.65 By matching By MS/MS By MS/MS 1 1 1 1.0849 1.0566 9.385 3 Median NaN NaN NaN 0 0 Median 1.227 1.0566 NaN 1 0 Median 1.0849 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9461 0.9639 NaN 1 0 Median NaN NaN NaN 0 0 Median 16369000 7621300 8747900 0 0 0 1649800 847370 802430 3731000 1923900 1807100 0 0 0 10988000 4850000 6138400 0 0 0 8728 3470 9070 43319;43320;43321 43321;43322 43322 2 FEEEIKAEQEER SFFEAKVQAINVSSRFEEEIKAEQEERKKQ SSRFEEEIKAEQEERKKQAEEMKQRKAAFK R F E E R K 1 1 0 0 0 1 6 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1535.7104 Q96C19 Q96C19 207 218 EFHD2 EF-hand domain-containing protein D2 yes yes 2;3 0.00020429 77.379 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.94725 1.3062 21.066 6 Linear 1.0094 1.0028 NaN 1 0 Median 0.91009 0.83537 19.476 2 1 Median 1.0458 1.1379 22.85 2 0 Median 0.84507 0.7975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21084000 10677000 10407000 2974500 1335500 1639000 5513500 2794700 2718800 10345000 5217500 5127100 2251800 1329700 922100 0 0 0 0 0 0 8729 3613 9071 43322;43323;43324;43325;43326;43327 43323;43324;43325;43326;43327 43325 5 FEEFLQR EEKRTLLARLVRSTRFEEFLQRKWSSEKRF ARLVRSTRFEEFLQRKWSSEKRFGLEGCEV R F E Q R K 0 1 0 0 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 967.47633 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 275 281 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.030589 64.803 By MS/MS 1 0.59844 0.5026 NaN 1 Median NaN NaN NaN 0 0 Median 0.59844 0.5026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6881000 4146200 2734800 0 0 0 6881000 4146200 2734800 0 0 0 0 0 0 0 0 0 0 0 0 8730 912 9072 43328 43328 43328 1 FEEFQNTLSK QETHLKQQLALYTEKFEEFQNTLSKSSEVF LYTEKFEEFQNTLSKSSEVFTTFKQEMEKM K F E S K S 0 0 1 0 0 1 2 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 10 0 1241.5928 P40222 P40222 394 403 TXLNA Alpha-taxilin yes yes 2 0.00043466 74.464 By MS/MS 2 1.3024 1.1186 15.696 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3024 1.1186 15.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6827300 2748200 4079100 0 0 0 0 0 0 0 0 0 6827300 2748200 4079100 0 0 0 0 0 0 8731 2284 9073 43329;43330 43329;43330;43331;43332 43332 4 FEEFQTDMAAHEER ELGQDLEHVEVLQKKFEEFQTDMAAHEERV KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ K F E E R V 2 1 0 1 0 1 4 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 14 0 1738.7257 A0A0D9SF54;Q13813 Q13813 191 204 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00017289 65.092 By matching By MS/MS By MS/MS 1 1 2 1.0582 1.0297 21.81 4 Median NaN NaN NaN 0 0 Median 1.6408 1.3962 NaN 1 0 Median 0.94432 1.0366 NaN 1 0 Median 1.0582 0.91633 15.566 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11855000 5458200 6396500 0 0 0 2854400 1046200 1808200 6676800 3309500 3367300 2323400 1102500 1221000 0 0 0 0 0 0 8732 264;2838 9074 43331;43332;43333;43334 43333;43334;43335 43334 3 FEEHVQSVDIAAFNK DDKVGTDLLEEEITKFEEHVQSVDIAAFNK FEEHVQSVDIAAFNKI______________ K F E N K I 2 0 1 1 0 1 2 0 1 1 0 1 0 2 0 1 0 0 0 2 0 0 15 0 1732.842 E9PRY8;H0YE72;P29692;E9PQZ1 P29692 266 280 EEF1D Elongation factor 1-delta no no 3 5.6628E-05 73.887 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1713 0.98884 9.3071 4 Median NaN NaN NaN 0 0 Median 1.1801 1.0013 NaN 1 0 Median 1.1861 1.1434 NaN 1 0 Median 1.1626 0.97656 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0993 0.91646 NaN 1 0 Median 38316000 17099000 21216000 0 0 0 644140 300400 343740 30823000 13774000 17048000 6340200 2761400 3578800 0 0 0 508820 263540 245280 8733 985;2174 9075 43335;43336;43337;43338 43336;43337;43338;43339 43337 4 FEEHVQSVDIAAFNKI DDKVGTDLLEEEITKFEEHVQSVDIAAFNK EEHVQSVDIAAFNKI_______________ K F E K I - 2 0 1 1 0 1 2 0 1 2 0 1 0 2 0 1 0 0 0 2 0 0 16 1 1845.9261 E9PRY8;H0YE72;P29692;E9PQZ1 P29692 266 281 EEF1D Elongation factor 1-delta no no 3 0.011897 22.154 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1162 1.3323 18.016 4 Linear 0.96694 0.95022 NaN 1 0 Median 1.0411 0.88221 NaN 1 0 Median 1.384 1.3329 NaN 1 0 Median 1.1967 1.0088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22998000 9578400 13419000 1304100 548950 755160 1158600 533670 624890 17744000 7257000 10487000 2791600 1238700 1552900 0 0 0 0 0 0 8734 985;2174 9076 43339;43340;43341;43342 43340;43341 43340 2 FEELCSDLFR LFEGIDFYTSITRARFEELCSDLFRSTLEP ITRARFEELCSDLFRSTLEPVEKALRDAKL R F E F R S 0 1 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1314.5914 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;P48741 A0A0G2JIW1 303 312 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.00055052 116.52 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 3 1 2 2 1 1.2452 1.0894 15.474 10 Median 1.417 1.3549 NaN 1 0 Median 1.2332 1.0651 13.273 3 0 Median 0.83639 0.87937 NaN 1 0 Median 1.3593 1.1628 12.967 2 0 Median 1.0786 1.1146 18.734 2 0 Median 1.3612 1.1944 NaN 1 0 Median 45888000 20792000 25096000 8804200 3568700 5235500 30352000 14146000 16206000 1362100 798100 563990 703710 273910 429810 4336200 1847700 2488600 329770 156870 172900 8735 278;2035 9077 43343;43344;43345;43346;43347;43348;43349;43350;43351;43352 43342;43343;43344;43345 43344 4 FEELGVK HIGIAVPDVYSACKRFEELGVKFVKKPDDG DVYSACKRFEELGVKFVKKPDDGKMKGLAF R F E V K F 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 820.43307 Q04760 Q04760 142 148 GLO1 Lactoylglutathione lyase yes yes 2 0.0069988 90.986 By MS/MS By MS/MS By MS/MS 1 2 1 1.1119 1.0348 10.725 4 Median 1.0945 1.0114 NaN 1 0 Median 1.2132 1.0328 18.293 2 0 Median 1.1297 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66056000 32663000 33393000 43796000 22381000 21415000 10136000 4340700 5794900 12125000 5941400 6183200 0 0 0 0 0 0 0 0 0 8736 2712 9078 43353;43354;43355;43356 43346;43347;43348 43348 3 FEELNADLFR LYEGIDFYTSITRARFEELNADLFRGTLDP ITRARFEELNADLFRGTLDPVEKALRDAKL R F E F R G 1 1 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 10 0 1252.6088 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2;P54652 P11142 302 311 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 2.2306E-05 145.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 2 2 1 2 1.1629 1.0196 53.949 14 Median 1.1421 1.0745 6.4638 2 0 Median 1.151 0.99474 86.085 5 1 Median 1.1684 1.2587 20.491 2 0 Median 1.197 1.0197 2.5828 2 0 Median 1.0652 1.0845 NaN 1 0 Median 1.2074 1.0103 0.35428 2 0 Median 613180000 283380000 329800000 102140000 45373000 56767000 430650000 200270000 230380000 42986000 20660000 22326000 22729000 10191000 12538000 11489000 5464600 6024300 3188000 1424400 1763600 8737 1950;2483 9079 43357;43358;43359;43360;43361;43362;43363;43364;43365;43366;43367;43368;43369;43370 43349;43350;43351;43352;43353;43354;43355;43356;43357;43358;43359;43360;43361;43362;43363;43364 43364 16 FEELNMDLFR FYEGEDFSETLTRAKFEELNMDLFRSTMKP LTRAKFEELNMDLFRSTMKPVQKVLEDSDL K F E F R S 0 1 1 1 0 0 2 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 10 0 1312.6122 P11021 P11021 327 336 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.00041689 122.13 By MS/MS By MS/MS By matching 2 2 1 1.239 1.08 16.083 5 Median 1.3232 1.3054 23.91 2 0 Median 1.2315 1.0691 0.18132 2 0 Median NaN NaN NaN 0 0 Median 1.3153 1.08 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30906000 13616000 17290000 5864400 2794000 3070500 24967000 10789000 14178000 0 0 0 73801 32610 41191 0 0 0 0 0 0 8738 1948 9080 43371;43372;43373;43374;43375 43365;43366;43367;43368;43369;43370 43370 6 FEELTNLIR EEDTKRVVRSAKDKRFEELTNLIRTIRNAM SAKDKRFEELTNLIRTIRNAMKIRDVTKCL R F E I R T 0 1 1 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1133.6081 Q99613;B5ME19;H3BPE4 Q99613 57 65 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.00056821 94.302 By MS/MS By matching By MS/MS By matching By matching 2 1 3 1 1 1.24 1.1772 29.504 8 Median 1.033 0.9832 18.554 2 0 Median 1.2092 1.0088 NaN 1 0 Median 1.2717 1.2361 47.473 3 1 Median 1.4991 1.2637 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.811 1.4237 NaN 1 0 Median 45102000 20374000 24728000 25380000 11599000 13781000 13428000 6130600 7297700 5776500 2479900 3296600 168080 57116 110960 0 0 0 349220 107690 241530 8739 3757 9081 43376;43377;43378;43379;43380;43381;43382;43383 43371;43372 43372 2 FEEMIQQIK SVEDYKALQKYEKEKFEEMIQQIKETGANL KYEKEKFEEMIQQIKETGANLAICQWGFDD K F E I K E 0 0 0 0 0 2 2 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1164.5849 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 285 293 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0055515 57.281 By matching By MS/MS By matching 1 1 1 1.2508 0.99106 14.235 3 Plateau 1.3433 1.2607 NaN 1 0 Median 1.1646 0.97976 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1537 0.99106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20553000 8806400 11747000 11899000 5038400 6860900 7664800 3447600 4217100 0 0 0 989370 320390 668980 0 0 0 0 0 0 8740 2364 9082 43384;43385;43386 43373;43374 43373 2 FEENQKEFER GDEHMDEHLYVAFAKFEENQKEFERVRVIY VAFAKFEENQKEFERVRVIYKYALDRISKQ K F E E R V 0 1 1 0 0 1 4 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 10 1 1354.6153 Q5JY65;Q9BZJ0 Q5JY65 410 419 CRNKL1 Crooked neck-like protein 1 yes no 3 0.00026407 70.977 By MS/MS 1 0.79577 0.84463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79577 0.84463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3800000 1970400 1829600 0 0 0 0 0 0 3800000 1970400 1829600 0 0 0 0 0 0 0 0 0 8741 3061 9083 43387 43375 43375 1 FEEPAPLSYDSRPR RQHPEESSERGYFPRFEEPAPLSYDSRPRY RFEEPAPLSYDSRPRYEQAPRASALRHEEQ R F E P R Y 1 2 0 1 0 0 2 0 0 0 1 0 0 1 3 2 0 0 1 0 0 0 14 1 1662.8002 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 1040 1053 TJP1 Tight junction protein ZO-1 yes no 3 0.00025489 60.157 By MS/MS By matching By MS/MS 1 1 1 0.55034 0.69521 33.878 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55034 0.69521 NaN 1 0 Median 1.0434 1.0215 NaN 1 0 Median 0.48061 0.51991 NaN 1 0 Median NaN NaN NaN 0 0 Median 15984000 9002300 6982100 0 0 0 0 0 0 8230800 4557100 3673700 796680 351870 444810 6956900 4093300 2863600 0 0 0 8742 104 9084 43388;43389;43390 43376;43377 43376 2 FEEPDSASVK FLKKQEDFEQKYNFRFEEPDSASVKTYPRS KYNFRFEEPDSASVKTYPRSIASSVRRKDE R F E V K T 1 0 0 1 0 0 2 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 10 0 1107.5084 A0A494C108;Q8N9T8 A0A494C108 308 317 KRI1 Protein KRI1 homolog yes no 2 0.0014621 65.305 By MS/MS By matching By MS/MS 1 1 1 0.86331 0.92789 5.59 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84256 0.92789 NaN 1 0 Median 1.1478 0.99672 NaN 1 0 Median 0.86331 0.89274 NaN 1 0 Median NaN NaN NaN 0 0 Median 9679700 4909000 4770700 0 0 0 0 0 0 3960600 2198300 1762300 1561600 668680 892880 4157600 2042000 2115600 0 0 0 8743 463 9085 43391;43392;43393 43378;43379;43380 43378 3 FEEQGASDLAK LMGVCFVLEKWDLSKFEEQGASDLAKEGQE DLSKFEEQGASDLAKEGQEENETCSGGNEN K F E A K E 2 0 0 1 0 1 2 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1193.5564 Q7Z2Z2 Q7Z2Z2 902 912 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 2 0.00019688 105.52 By MS/MS 1 0.94741 0.81802 NaN 1 Median NaN NaN NaN 0 0 Median 0.94741 0.81802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3615300 1800400 1815000 0 0 0 3615300 1800400 1815000 0 0 0 0 0 0 0 0 0 0 0 0 8744 3238 9086 43394 43381 43381 1 FEFLGINR LKFQIGELANTLTSKFEFLGINRQSISNFH ANTLTSKFEFLGINRQSISNFHVLLLQTET K F E N R Q 0 1 1 0 0 0 1 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 8 0 994.52362 Q8N3X1 Q8N3X1 541 548 FNBP4 Formin-binding protein 4 yes yes 2 0.013618 52.683 By matching By MS/MS By matching 1 2 1 0.7828 0.76934 19.061 4 Median 0.58688 0.5889 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7828 0.84799 14.086 2 0 Median 0.87116 0.77108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7742300 4403200 3339100 1155400 775030 380320 0 0 0 6414900 3543800 2871100 172010 84340 87670 0 0 0 0 0 0 8745 3370 9087 43395;43396;43397;43398 43382;43383 43383 2 FEFTPGRDTAEGVSQELISAGLVDGR VLRLRNSKKELNDIRFEFTPGRDTAEGVSQ GVSQELISAGLVDGRDLVIVAANLQKIVEE R F E G R D 2 2 0 2 0 1 3 4 0 1 2 0 0 2 1 2 2 0 0 2 0 0 26 1 2750.3511 O95747 O95747 452 477 OXSR1 Serine/threonine-protein kinase OSR1 yes yes 3 0.012954 17.358 By MS/MS 1 1.0653 1.0496 NaN 1 Median 1.0653 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1096700 521400 575300 1096700 521400 575300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8746 1789 9088 43399 43384 43384 1 FEGAIYR ISALEEAKKGLAAIKFEGAIYRKDVGFRAI KKGLAAIKFEGAIYRKDVGFRAIAFLQQPR K F E Y R K 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 854.42865 P22102 P22102 412 418 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.014908 73.039 By MS/MS By MS/MS By matching 2 4 1 1.3236 1.1681 9.202 7 Median 1.1681 1.1551 15.318 2 0 Median 1.4088 1.1682 6.7289 4 0 Median NaN NaN NaN 0 0 Median 1.3035 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18680000 8219500 10461000 6663100 3134100 3529100 11769000 4980600 6788800 0 0 0 247610 104820 142790 0 0 0 0 0 0 8747 2098 9089 43400;43401;43402;43403;43404;43405;43406 43385;43386;43387 43387 3 FEGDTGLIVR KYFKMGDHVKVIAGRFEGDTGLIVRVEENF VIAGRFEGDTGLIVRVEENFVILFSDLTMH R F E V R V 0 1 0 1 0 0 1 2 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1105.5768 O00267 O00267 485 494 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.00039696 99.442 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 3 2 0.99783 0.91229 49.188 10 Median 1.1625 1.1199 NaN 1 0 Median 1.1876 1.0228 12.144 2 0 Median 0.80525 0.88531 NaN 1 0 Median 1.2349 1.0638 NaN 1 0 Median 0.82076 0.86688 3.7246 3 0 Median 0.64451 0.5123 120.45 2 0 Median 60152000 29880000 30272000 11916000 5305500 6610800 7342400 3128700 4213700 15928000 8483000 7444800 1373400 696970 676460 22015000 11192000 10823000 1577300 1073900 503400 8748 1452 9090 43407;43408;43409;43410;43411;43412;43413;43414;43415;43416 43388;43389;43390 43389 3 FEGDTLVNR FYKDDGNYKTRAEVKFEGDTLVNRIELKGI TRAEVKFEGDTLVNRIELKGIDFKEDGNIL K F E N R I 0 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1049.5142 CON__Q9U6Y5;P37840 P37840 254 262 SNCA Alpha-synuclein no no 2 7.9756E-09 157.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 9 6 7 7 8 1.3693 1.2523 73.523 40 Median 1.1069 1.0259 7.3324 5 0 Median 1.1619 0.9882 8.9531 8 0 Median 1.4086 1.4322 22.377 6 3 Linear 1.6844 1.3891 62.927 7 1 Median 15.379 15.939 85.369 6 3 Linear 3.9361 3.1406 12.713 8 1 Median 2952900000 1217600000 1735400000 727790000 333220000 394570000 1425800000 631310000 794530000 331450000 138260000 193190000 237560000 81391000 156160000 130110000 14675000 115430000 100200000 18703000 81493000 + 8749 2271;795 9091 43417;43418;43419;43420;43421;43422;43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433;43434;43435;43436;43437;43438;43439;43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451;43452;43453;43454;43455;43456;43457;43458 43391;43392;43393;43394;43395;43396;43397;43398;43399;43400;43401;43402;43403;43404;43405;43406;43407;43408;43409;43410;43411;43412;43413;43414;43415;43416;43417;43418;43419;43420;43421;43422;43423;43424;43425;43426;43427;43428;43429;43430;43431;43432;43433;43434;43435;43436;43437;43438;43439;43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451;43452 43418 62 FEGDTLVNRIELK FYKDDGNYKTRAEVKFEGDTLVNRIELKGI VKFEGDTLVNRIELKGIDFKEDGNILGHKM K F E L K G 0 1 1 1 0 0 2 1 0 1 2 1 0 1 0 0 1 0 0 1 0 0 13 1 1532.8199 CON__Q9U6Y5;P37840 P37840 254 266 SNCA Alpha-synuclein no no 2;3 0.00043131 130.56 By MS/MS By matching By matching By MS/MS 7 1 1 3 1.6503 1.5829 104.34 12 Median 1.3479 1.3702 31.986 7 1 Median 1.9078 1.6814 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.6296 3.5078 NaN 1 0 Median 16.2 17.528 78.976 3 2 Median NaN NaN NaN 0 0 Median 138050000 56584000 81464000 126270000 55282000 70992000 297590 119800 177800 0 0 0 884510 187950 696570 10592000 994490 9597700 0 0 0 + 8750 2271;795 9092 43459;43460;43461;43462;43463;43464;43465;43466;43467;43468;43469;43470 43453;43454;43455;43456;43457;43458;43459;43460;43461;43462;43463;43464;43465 43462 13 FEGEPATHTQPGVQLQSNTYDLQESNVR GLGKSTLMDTLFNTKFEGEPATHTQPGVQL QLQSNTYDLQESNVRLKLTIVSTVGFGDQI K F E V R L 1 1 2 1 0 4 3 2 1 0 2 0 0 1 2 2 3 0 1 2 0 0 28 0 3144.4748 B1AMS2;Q14141 B1AMS2 67 94 SEPT6 Septin-6 yes no 3 1.4449E-73 188.39 By MS/MS By MS/MS 2 2 0.82664 0.75515 26.695 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60777 0.59726 1.2971 2 0 Median 1.1017 0.94816 0.31339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90407000 51082000 39325000 0 0 0 0 0 0 74408000 43924000 30484000 15999000 7157400 8841400 0 0 0 0 0 0 8751 573 9093 43471;43472;43473;43474 43466;43467;43468;43469;43470;43471;43472;43473;43474;43475 43467 10 FEGGDRDLEHLSK TIYFAPSGDKKNPVKFEGGDRDLEHLSKFI VKFEGGDRDLEHLSKFIEEHATKLSRTKEE K F E S K F 0 1 0 2 0 0 2 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 13 1 1501.7161 P13667;A0A499FI48 P13667 617 629 PDIA4 Protein disulfide-isomerase A4 yes no 3 0.0019598 38.279 By MS/MS By MS/MS By MS/MS 2 2 1 0.79551 0.80525 30.082 5 Median 0.78448 0.79993 0.93716 2 0 Median 1.2429 1.1848 24.822 2 0 Median NaN NaN NaN 0 0 Median 0.67572 0.63505 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33062000 17241000 15821000 14609000 8469800 6139600 14229000 6080400 8149100 0 0 0 4223300 2690800 1532500 0 0 0 0 0 0 8752 1993 9094 43475;43476;43477;43478;43479 43476;43477;43478;43479;43480;43481 43479 6 FEGKPLLQR NRCSCSFRVLVVSAKFEGKPLLQRHRLVNA LVVSAKFEGKPLLQRHRLVNACLAEELPHI K F E Q R H 0 1 0 0 0 1 1 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 9 1 1086.6186 Q9H3K6;H3BV85;A0A087WZT3;H3BTW0;A0A0B4J295;H3BVE0 Q9H3K6 44 52 BOLA2;BOLA2B BolA-like protein 2 yes no 2 0.0027757 111.82 By MS/MS By MS/MS By matching 1 1 1 1.009 0.9846 11.041 3 Plateau 1.009 0.98939 NaN 1 0 Median 1.0921 0.96419 NaN 1 0 Median 0.77359 0.80775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25989000 12953000 13036000 12693000 6100400 6592300 11072000 5756900 5315100 2224200 1095400 1128800 0 0 0 0 0 0 0 0 0 8753 3955 9095 43480;43481;43482 43482;43483;43484 43483 3 FEGLSPLQR PGSETHFRVAVVSSRFEGLSPLQRHRLVHA AVVSSRFEGLSPLQRHRLVHAALAEELGGP R F E Q R H 0 1 0 0 0 1 1 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 9 0 1045.5556 Q9Y3E2 Q9Y3E2 77 85 BOLA1 BolA-like protein 1 yes yes 2 8.5976E-05 148.38 By MS/MS 1 0.86173 0.83882 NaN 1 Median 0.86173 0.83882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6908900 3675800 3233100 6908900 3675800 3233100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8754 4427 9096 43483 43485;43486 43486 2 FEGPQVQDGR RGVSVWPVGLVGGLRFEGPQVQDGRVVGFH VGGLRFEGPQVQDGRVVGFHTAWEPSRPFP R F E G R V 0 1 0 1 0 2 1 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1131.5309 O94766;G3V150 O94766 226 235 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes no 2 0.036655 46.158 By MS/MS 1 1.4844 1.2677 NaN 1 Median NaN NaN NaN 0 0 Median 1.4844 1.2677 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1432100 532160 899970 0 0 0 1432100 532160 899970 0 0 0 0 0 0 0 0 0 0 0 0 8755 1101 9097 43484 43487 43487 1 FEGQFSINK DNSMKIPLNNGAGCRFEGQFSINKVPGNFH NGAGCRFEGQFSINKVPGNFHVSTHSATAQ R F E N K V 0 0 1 0 0 1 1 1 0 1 0 1 0 2 0 1 0 0 0 0 0 0 9 0 1068.524 Q969X5;F2Z3Q5;F2Z2U2 Q969X5 117 125 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes no 2 0.0075386 51.193 By MS/MS By MS/MS 1 2 1.2303 1.0798 13.194 2 Median 1.0734 0.98358 NaN 1 0 Median 1.4101 1.1853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25147000 11220000 13926000 14733000 6895400 7837600 10414000 4325000 6088800 0 0 0 0 0 0 0 0 0 0 0 0 8756 3590 9098 43485;43486;43487 43488;43489;43490 43489 3 FEGQPSSLPLENETDSHPSSSNTVK VHQQHKHSFCDNLPKFEGQPSSLPLENETD ENETDSHPSSSNTVKKSQTSILGLSSKNNF K F E V K K 0 0 2 1 0 1 3 1 1 0 2 1 0 1 3 6 2 0 0 1 0 0 25 0 2686.2358 Q96JM2 Q96JM2 632 656 ZNF462 Zinc finger protein 462 yes yes 3 0.0081061 19.737 By MS/MS 1 0.52729 0.57194 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52729 0.57194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3250500 1882200 1368300 0 0 0 0 0 0 3250500 1882200 1368300 0 0 0 0 0 0 0 0 0 8757 3686 9099 43488 43491 43491 1 FEGTTSLGEVR VRKSMSHQAAIASQRFEGTTSLGEVRTPSQ ASQRFEGTTSLGEVRTPSQLSDNNCRQ___ R F E V R T 0 1 0 0 0 0 2 2 0 0 1 0 0 1 0 1 2 0 0 1 0 0 11 0 1194.5881 Q4G0F5 Q4G0F5 314 324 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 2 0.0098139 63.283 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8758 3019 9100 43489 43492 43492 1 FEHCNFNDVTTR LITKAGLQVYNKCWKFEHCNFNDVTTRLRE CWKFEHCNFNDVTTRLRENELTYYCCKKDL K F E T R L 0 1 2 1 1 0 1 0 1 0 0 0 0 2 0 0 2 0 0 1 0 0 12 0 1538.6572 E9PNW4;A0A2U3TZL5;P13987 E9PNW4 67 78 CD59 CD59 glycoprotein yes no 2;3 0.00017318 62.924 By MS/MS By MS/MS 3 1 1.1144 0.9333 31.907 4 Median NaN NaN NaN 0 0 Median 1.2243 1.0151 21.716 3 0 Plateau 1.3938 1.4132 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11947000 5514900 6432300 0 0 0 10148000 4763500 5384200 1799500 751390 1048100 0 0 0 0 0 0 0 0 0 8759 406 9101 43490;43491;43492;43493 43493;43494;43495;43496 43494 4 FEHQEWK LEAQAYTAYLSGMLRFEHQEWKAAIEAFNK AYLSGMLRFEHQEWKAAIEAFNKCKTIYEK R F E W K A 0 0 0 0 0 1 2 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 7 0 1002.4559 Q9UHB9 Q9UHB9 199 205 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.035027 60.76 By MS/MS 1 1.0832 0.93153 NaN 1 Median NaN NaN NaN 0 0 Median 1.0832 0.93153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3118600 1397000 1721700 0 0 0 3118600 1397000 1721700 0 0 0 0 0 0 0 0 0 0 0 0 8760 4274 9102 43494 43497 43497 1 FEHSLGVGYLAGCLVHALGEK LGGGYYVFPGASHNRFEHSLGVGYLAGCLV VGYLAGCLVHALGEKQPELQISERDVLCVQ R F E E K Q 2 0 0 0 1 0 2 4 2 0 4 1 0 1 0 1 0 0 1 2 0 0 21 0 2256.1361 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9 Q9Y3Z3 165 185 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 3 0.0088676 21.2 By MS/MS 1 1.1001 0.95067 NaN 1 Median NaN NaN NaN 0 0 Median 1.1001 0.95067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1228100 533640 694440 0 0 0 1228100 533640 694440 0 0 0 0 0 0 0 0 0 0 0 0 8761 4436 9103 43495 43498 43498 1 FEIGEGENLDLPYGLER EGYYKDKLFDQRELRFEIGEGENLDLPYGL IGEGENLDLPYGLERAIQRMEKGEHSIVYL R F E E R A 0 1 1 1 0 0 4 3 0 1 3 0 0 1 1 0 0 0 1 0 0 0 17 0 1949.9371 Q02790 Q02790 190 206 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 2.3364E-10 101.6 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.79665 0.73963 5.4876 4 Median 0.73121 0.73878 NaN 1 1 Median 0.85444 0.71895 NaN 1 0 Median 0.74276 0.74048 NaN 1 0 Median 0.92316 0.81495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28558000 16043000 12515000 2103000 1116800 986160 10962000 5751400 5210800 15360000 9110200 6250000 132710 64308 68404 0 0 0 0 0 0 8762 2701 9104 43496;43497;43498;43499 43499;43500;43501;43502;43503;43504;43505 43500 7 FEISAIR RNYDGKNNYPKACGKFEISAIRDLTTGYDD NYPKACGKFEISAIRDLTTGYDDSQPDKKA K F E I R D 1 1 0 0 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 7 0 834.45995 Q96G03 Q96G03 513 519 PGM2 Phosphoglucomutase-2 yes yes 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.1942 1.0951 2.9635 2 Median 1.1507 1.1183 NaN 1 0 Median 1.2392 1.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12006000 5998900 6007200 5109900 2688400 2421500 6896200 3310400 3585700 0 0 0 0 0 0 0 0 0 0 0 0 8763 3652 9105 43500;43501 43506;43507;43508;43509 43506 4 FEISETSVNR GGVGPYELGMEHCEKFEISETSVNRGPEKI EHCEKFEISETSVNRGPEKIRPECFELLRV K F E N R G 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 2 1 0 0 1 0 0 10 0 1180.5724 P23443;K7EIM2;K7ER06 P23443 72 81 RPS6KB1 Ribosomal protein S6 kinase beta-1 yes no 2 0.017044 38.086 By matching By MS/MS 1 2 0.4614 0.39572 158.71 2 Median NaN NaN NaN 0 0 Median 0.4614 0.39572 158.71 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35727000 30105000 5621400 29005000 25091000 3914500 6721700 5014700 1706900 0 0 0 0 0 0 0 0 0 0 0 0 8764 2113 9106 43502;43503;43504 43510 43510 1 FEIVYNLLSLR LVDLTAVDVPTRQNRFEIVYNLLSLRFNSR RQNRFEIVYNLLSLRFNSRIRVKTYTDELT R F E L R F 0 1 1 0 0 0 1 0 0 1 3 0 0 1 0 1 0 0 1 1 0 0 11 0 1365.7656 O75489 O75489 126 136 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.0054074 46.158 By MS/MS By MS/MS 1 1 1.3108 1.177 23.747 2 Median 1.0551 0.99507 NaN 1 0 Median 1.6285 1.3922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2492500 1172900 1319600 2014200 1001200 1013000 478310 171720 306590 0 0 0 0 0 0 0 0 0 0 0 0 8765 1678 9107 43505;43506 43511;43512;43513 43512 3 FEIWDTAGQER AFLTQTVCLDDTTVKFEIWDTAGQERYHSL TTVKFEIWDTAGQERYHSLAPMYYRGAQAA K F E E R Y 1 1 0 1 0 1 2 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 11 0 1350.6204 P51148;K7ERI8;K7ERQ8;F8VVK3;K7ENY4;F8VVZ0;F8VWU4;P20339;P61020;F8VUA5 P51148 72 82 RAB5C;RAB5B;RAB5A Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 2 2.1961E-06 161.63 By MS/MS By MS/MS By MS/MS 1 1 1 1.0641 1.0117 5.9958 3 Median 1.0641 1.0117 NaN 1 0 Median 1.2839 1.0858 NaN 1 0 Median 1.0045 0.96377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52684000 25312000 27372000 37670000 17940000 19730000 8929100 3956400 4972700 6084300 3415300 2669000 0 0 0 0 0 0 0 0 0 8766 2427;2078;2538 9108 43507;43508;43509 43514;43515;43516;43517;43518 43515 5 FEKEAAEMGK LIYKCGGIDKRTIEKFEKEAAEMGKGSFKY RTIEKFEKEAAEMGKGSFKYAWVLDKLKAE K F E G K G 2 0 0 0 0 0 3 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 10 1 1138.5329 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 42 51 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 0.001927 76.827 By MS/MS By MS/MS By matching By matching By matching 4 1 2 1 1 0.91076 0.97787 15.985 9 Median 0.93738 1.0038 17.571 4 0 Median 0.9495 0.89513 NaN 1 0 Median 0.85338 0.93678 14.09 2 0 Median 0.82901 0.78741 NaN 1 0 Median 1.0636 1.1355 NaN 1 0 Median NaN NaN NaN 0 0 Median 11159000 5342800 5816200 7222000 3366400 3855600 1030700 543440 487230 914830 467960 446880 790730 407450 383270 1200800 557520 643270 0 0 0 8767 2632;404 9109 43510;43511;43512;43513;43514;43515;43516;43517;43518 43519;43520;43521 43519 3 FELALQLGELK FKQQALTVSTDPEHRFELALQLGELKIAYQ PEHRFELALQLGELKIAYQLAVEAESEQKW R F E L K I 1 0 0 0 0 1 2 1 0 0 4 1 0 1 0 0 0 0 0 0 0 0 11 0 1259.7125 P35606 P35606 645 655 COPB2 Coatomer subunit beta yes yes 2 0.00018232 77.677 By MS/MS 2 1.1757 1.0262 20.333 2 Median NaN NaN NaN 0 0 Median 1.1757 1.0262 20.333 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17655000 8699000 8956200 0 0 0 17655000 8699000 8956200 0 0 0 0 0 0 0 0 0 0 0 0 8768 2246 9110 43519;43520 43522;43523 43523 2 FELDTSER EVVFVAEPDNKNVYKFELDTSERKIEFDSA DNKNVYKFELDTSERKIEFDSASGTYTLYL K F E E R K 0 1 0 1 0 0 2 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 995.45599 P04844 P04844 461 468 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 0.0023123 109.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.3605 1.2061 14.816 7 Median 1.1513 1.1166 24.13 2 0 Median 1.3947 1.2061 16.667 3 0 Median 1.1275 1.148 NaN 1 0 Median 1.5304 1.278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53179000 23227000 29952000 9607200 3516800 6090400 34484000 15848000 18636000 7092400 3113000 3979500 1994700 748330 1246400 0 0 0 0 0 0 8769 1854 9111 43521;43522;43523;43524;43525;43526;43527 43524;43525;43526;43527;43528;43529;43530 43525 7 FELGSSSIAHMVMGTTNQFSTR AWQFLRKNWNKLVQKFELGSSSIAHMVMGT IAHMVMGTTNQFSTRTRLEEVKGFFSSLKE K F E T R T 1 1 1 0 0 1 1 2 1 1 1 0 2 2 0 4 3 0 0 1 0 0 22 0 2400.1202 Q9NZ08;H0Y9X5 Q9NZ08 864 885 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 3 0.015034 16.096 By MS/MS By matching 1 2 1.3602 1.2848 11.956 3 Median 1.3602 1.3623 NaN 1 0 Median 1.3507 1.1792 12.127 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1982600 824770 1157800 1374700 582770 791960 607830 242000 365830 0 0 0 0 0 0 0 0 0 0 0 0 8770 4182 9112 43528;43529;43530 43531 43531 1 FELPMGTTEQPPLPQQTQPPAK GFCPEGPSCKFMHPRFELPMGTTEQPPLPQ TEQPPLPQQTQPPAKRTPQVIGVMQSQNSS R F E A K R 1 0 0 0 0 4 2 1 0 0 2 1 1 1 6 0 3 0 0 0 0 0 22 0 2434.2202 C9JEV9;O95639;B7Z7B0;H7C419 C9JEV9 137 158 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes no 2;3 6.6496E-07 41.912 By MS/MS By matching By matching 3 1 1 0.33373 0.3128 28.717 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33373 0.3128 13.302 3 0 Plateau 0.48023 0.42168 NaN 1 0 Median 0.46193 0.49065 NaN 1 0 Median NaN NaN NaN 0 0 Median 23402000 17257000 6144900 0 0 0 0 0 0 20144000 14910000 5234200 178060 116400 61664 3079900 2230800 849070 0 0 0 8771 693 9113 43531;43532;43533;43534;43535 43532;43533;43534 43532 3 FELQHGTEEQQEEVR KIDSDLGDAWAFFYKFELQHGTEEQQEEVR FELQHGTEEQQEEVRKRCESAEPRHGELWC K F E V R K 0 1 0 0 0 3 5 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 15 0 1857.8493 O94906 O94906 884 898 PRPF6 Pre-mRNA-processing factor 6 yes yes 2;3 2.4933E-27 200.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 2 4 1.1287 0.98566 27.326 17 Median 1.1385 1.1 14.127 2 0 Median 0.75196 0.64864 43.414 2 1 Median 0.97422 1.0316 15.178 4 0 Median 1.1742 1.012 16.593 3 0 Median 1.3942 1.4436 32.556 2 0 Median 1.1001 0.89897 5.6208 4 0 Median 160150000 75726000 84419000 11807000 5984800 5822300 7331800 3505100 3826700 69303000 34264000 35039000 46001000 20366000 25635000 17014000 7547700 9466300 8689300 4059400 4629800 8772 1735 9114 43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548;43549;43550;43551;43552 43535;43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546;43547;43548;43549;43550;43551;43552;43553;43554;43555 43548 21 FELQHGTEEQQEEVRK KIDSDLGDAWAFFYKFELQHGTEEQQEEVR ELQHGTEEQQEEVRKRCESAEPRHGELWCA K F E R K R 0 1 0 0 0 3 5 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 16 1 1985.9443 O94906 O94906 884 899 PRPF6 Pre-mRNA-processing factor 6 yes yes 3;4 0.00012165 45.864 By MS/MS 2 0.96873 1.1023 3.8748 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96873 1.1023 3.8748 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4040700 1968100 2072600 0 0 0 0 0 0 4040700 1968100 2072600 0 0 0 0 0 0 0 0 0 8773 1735 9115 43553;43554 43556;43557;43558 43558 3 FELSGIPPAPR EGERAMTKDNNLLGRFELSGIPPAPRGVPQ LLGRFELSGIPPAPRGVPQIEVTFDIDANG R F E P R G 1 1 0 0 0 0 1 1 0 1 1 0 0 1 3 1 0 0 0 0 0 0 11 0 1182.6397 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066 A0A0G2JIW1 460 470 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 0.040959 46.158 By MS/MS 1 0.88736 0.93479 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88736 0.93479 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4041000 2245300 1795800 0 0 0 0 0 0 4041000 2245300 1795800 0 0 0 0 0 0 0 0 0 8774 278;2035 9116 43555 43559 43559 1 FELTGIPPAPR EGERAMTKDNNLLGKFELTGIPPAPRGVPQ LLGKFELTGIPPAPRGVPQIEVTFDIDANG K F E P R G 1 1 0 0 0 0 1 1 0 1 1 0 0 1 3 0 1 0 0 0 0 0 11 0 1196.6554 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 459 469 HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0039963 48.794 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 3 0.81422 0.72138 33.481 15 Median 0.54819 0.52042 63.713 2 0 Median 0.84258 0.72663 1.0253 2 0 Median 0.81422 0.80757 8.103 3 0 Median 0.85059 0.71931 18.126 5 0 Median 0.76127 0.77608 57.197 3 0 Plateau NaN NaN NaN 0 0 Median 678570000 361010000 317570000 141220000 73936000 67286000 248220000 132230000 115990000 199880000 106240000 93637000 70085000 37159000 32926000 19170000 11440000 7729600 0 0 0 8775 1950 9117 43556;43557;43558;43559;43560;43561;43562;43563;43564;43565;43566;43567;43568;43569;43570 43560;43561;43562;43563;43564;43565;43566;43567;43568;43569;43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580 43561 21 FELYFQGPSSNKPR VRSPQNQYPAELMRRFELYFQGPSSNKPRV RFELYFQGPSSNKPRVIREVRADSVGKLVT R F E P R V 0 1 1 0 0 1 1 1 0 0 1 1 0 2 2 2 0 0 1 0 0 0 14 1 1668.826 P33993;C9J8M6 P33993 134 147 MCM7 DNA replication licensing factor MCM7 yes no 3 0.00018638 66.533 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.78059 0.77959 26.358 5 Median 0.61358 0.62966 NaN 1 0 Median 0.78059 0.77959 NaN 1 0 Median 0.55292 0.58735 NaN 1 0 Median 1.086 1.0139 11.888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20355000 12073000 8281900 6956600 4265600 2691000 2727200 1516000 1211200 10152000 6007100 4145400 518820 284550 234270 0 0 0 0 0 0 8776 2225 9118 43571;43572;43573;43574;43575 43581;43582;43583 43583 3 FEMEQNLR DIDNTRMTLDDFRIKFEMEQNLRQGVDADI LDDFRIKFEMEQNLRQGVDADINGLRQVLD K F E L R Q 0 1 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1065.4913 P35527;CON__P35527;K7EQQ3 P35527 243 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.3772E-19 160.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 4 2 0.085056 0.079993 112.5 16 Median 1.2174 1.193 115.34 3 3 Plateau 0.049438 0.03967 103.8 3 3 Median 0.14302 0.15239 89.529 2 2 Median 0.031553 0.022788 99.445 3 3 Median 0.050952 0.053929 87.048 3 3 Median 0.082861 0.068589 20.131 2 2 Median 76758000 71497000 5260600 7266600 5261300 2005300 21281000 20025000 1255800 9213900 8802000 411950 16667000 16193000 473130 20130000 19199000 931190 2199100 2015900 183190 + 8777 2242 9119 43576;43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588;43589;43590;43591;43592;43593 43584;43585;43586;43587;43588;43589;43590;43591;43592;43593;43594;43595;43596;43597;43598;43599;43600;43601 43587 18 FEMGHVR IFQNLDGALDEVVLKFEMGHVRARNLAYDT ALDEVVLKFEMGHVRARNLAYDTLPVLIHG K F E V R A 0 1 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 7 0 874.41196 Q02809 Q02809 221 227 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.046246 54.787 By MS/MS 1 1.2948 1.123 NaN 1 Median NaN NaN NaN 0 0 Median 1.2948 1.123 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2583700 1035500 1548200 0 0 0 2583700 1035500 1548200 0 0 0 0 0 0 0 0 0 0 0 0 8778 2702 9120 43594 43602 43602 1 FENAFLSHVVSQHQALLGTIR VRGYLDKLEPSKITKFENAFLSHVVSQHQA SHVVSQHQALLGTIRADGKISEQSDAKLKE K F E I R A 2 1 1 0 0 2 1 1 2 1 3 0 0 2 0 2 1 0 0 2 0 0 21 0 2366.2495 P25705 P25705 507 527 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 3;4 6.9155E-18 104.06 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 5 2 2 1 2 1.3271 1.1867 21.03 14 Median 1.1144 1.0502 2.8297 2 0 Median 1.3187 1.1067 19.93 5 0 Median 1.3827 1.3875 16.661 2 0 Median 1.5952 1.3777 3.023 2 0 Median 1.3914 1.3984 NaN 1 1 Median 1.7331 1.4455 10.618 2 0 Median 243570000 106080000 137490000 55954000 26402000 29552000 167160000 70300000 96861000 15844000 7638500 8205800 2324100 855520 1468500 780330 412650 367680 1504300 470090 1034200 8779 2135 9121 43595;43596;43597;43598;43599;43600;43601;43602;43603;43604;43605;43606;43607;43608 43603;43604;43605;43606;43607;43608;43609;43610;43611;43612;43613 43610 11 FENLGVSSLGER NEITGALLPCLDESRFENLGVSSLGERKKL ESRFENLGVSSLGERKKLLSYIQRLVQIHV R F E E R K 0 1 1 0 0 0 2 2 0 0 2 0 0 1 0 2 0 0 0 1 0 0 12 0 1306.6517 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9;A0A2R8Y586;A0A2R8YG48;A0A2R8Y7R5;A0A2R8Y755 Q9Y3Z3 86 97 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.00074852 61.353 By MS/MS 1 1.3277 1.1481 NaN 1 Median NaN NaN NaN 0 0 Median 1.3277 1.1481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14410000 6070500 8339200 0 0 0 14410000 6070500 8339200 0 0 0 0 0 0 0 0 0 0 0 0 8780 4436 9122 43609 43614;43615 43614 2 FEPIHGNFLLTGAYDNTAK VYTIPAHQNLVTGVKFEPIHGNFLLTGAYD HGNFLLTGAYDNTAKIWTHPGWSPLKTLAG K F E A K I 2 0 2 1 0 0 1 2 1 1 2 1 0 2 1 0 2 0 1 0 0 0 19 0 2107.0375 O43172 O43172 457 475 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 2.0949E-10 94.281 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1.0549 0.95552 16.341 6 Median 0.89453 0.85671 NaN 1 0 Median 1.2897 1.1412 3.0305 2 0 Median 0.77932 0.75178 NaN 1 0 Median 1.1015 0.94832 NaN 1 0 Median 1.0102 0.96277 NaN 1 1 Median NaN NaN NaN 0 0 Median 55405000 30652000 24752000 4880200 2498000 2382200 988180 344080 644100 43985000 24990000 18995000 1392100 739200 652890 4159200 2081500 2077700 0 0 0 8781 1557 9123 43610;43611;43612;43613;43614;43615 43616;43617;43618;43619;43620 43619 5 FEPPQSDSDGQR EERDERHKTKGRLSRFEPPQSDSDGQRRSM LSRFEPPQSDSDGQRRSMDAPSRRNRSSGV R F E Q R R 0 1 0 2 0 2 1 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 12 0 1361.5848 O15042;E7ET15;H0Y8D9;E7EW00 O15042 231 242 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.00090694 59.426 By MS/MS By matching By MS/MS 1 1 1 0.89285 0.76306 26.555 3 Median NaN NaN NaN 0 0 Median 0.89285 0.76306 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9584 0.81717 NaN 1 0 Median 0.47083 0.50044 NaN 1 1 Median NaN NaN NaN 0 0 Median 6114000 3949800 2164200 0 0 0 2909700 1643200 1266400 0 0 0 1145300 639590 505680 2059000 1666900 392110 0 0 0 8782 1515 9124 43616;43617;43618 43621;43622;43623 43622 3 FEPPQSDSDGQRR EERDERHKTKGRLSRFEPPQSDSDGQRRSM SRFEPPQSDSDGQRRSMDAPSRRNRSSGVL R F E R R S 0 2 0 2 0 2 1 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 13 1 1517.6859 O15042;E7ET15;H0Y8D9;E7EW00 O15042 231 243 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.032926 17.694 By matching By MS/MS 1 1 0.81701 0.93713 6.3976 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80619 0.9805 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82798 0.89568 NaN 1 0 Median NaN NaN NaN 0 0 Median 2371100 1270200 1100900 0 0 0 0 0 0 822450 383780 438680 0 0 0 1548700 886460 662200 0 0 0 8783 1515 9125 43619;43620 43624 43624 1 FEPQVDTEAEDMISAVK ENGLGKTDRKKEIVKFEPQVDTEAEDMISA PQVDTEAEDMISAVKSRRLLAIQAKKEREI K F E V K S 2 0 0 2 0 1 3 0 0 1 0 1 1 1 1 1 1 0 0 2 0 0 17 0 1907.8823 Q9UIG0 Q9UIG0 827 843 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.001731 36.847 By matching By MS/MS 1 1 0.69918 0.75488 5.5151 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65473 0.72601 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74665 0.7849 NaN 1 0 Median NaN NaN NaN 0 0 Median 4492000 2436700 2055300 0 0 0 0 0 0 832420 485960 346460 0 0 0 3659600 1950800 1708800 0 0 0 8784 4290 9126 43621;43622 43625;43626 43625 2 FEPVHFVASSSKDER PPKKQAGSKFHARPRFEPVHFVASSSKDER FEPVHFVASSSKDERQEDPYGPQTKEVNEQ R F E E R Q 1 1 0 1 0 0 2 0 1 0 0 1 0 2 1 3 0 0 0 2 0 0 15 1 1733.8373 O15226 O15226 57 71 NKRF NF-kappa-B-repressing factor yes yes 3 0.0036887 29.099 By MS/MS 1 0.79239 0.89916 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79239 0.89916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6302000 3346700 2955300 0 0 0 0 0 0 6302000 3346700 2955300 0 0 0 0 0 0 0 0 0 8785 1532 9127 43623 43627 43627 1 FEPYANPTKR NEKRKEKNIKRGGNRFEPYANPTKRYRAFI RGGNRFEPYANPTKRYRAFITNIPFDVKWQ R F E K R Y 1 1 1 0 0 0 1 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 10 1 1221.6142 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 61 70 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 8.7066E-05 82.261 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 3 3 4 0.86213 0.78471 22.052 17 Median 1.0299 1.0466 1.6715 2 0 Median 0.85533 0.78471 14.85 3 1 Median 0.61349 0.65147 2.0809 2 0 Median 0.86213 0.80901 28.206 3 0 Median 0.56414 0.62052 14.799 3 0 Median 0.97758 0.87071 18.578 4 0 Median 50906000 29936000 20970000 1669500 907780 761740 6636700 3437600 3199100 12701000 7674400 5026300 1260900 707800 553140 21411000 13619000 7791900 7227800 3589700 3638100 8786 116 9128 43624;43625;43626;43627;43628;43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639;43640 43628;43629;43630;43631;43632;43633;43634;43635;43636;43637;43638;43639;43640;43641;43642;43643 43638 16 FEQAQMLDPYLIK DLYFRAGDNKNSVLKFEQAQMLDPYLIKGM LKFEQAQMLDPYLIKGMDVYGYLLAREGRL K F E I K G 1 0 0 1 0 2 1 0 0 1 2 1 1 1 1 0 0 0 1 0 0 0 13 0 1594.8065 Q9UJX3 Q9UJX3 294 306 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.00021987 80.706 By MS/MS By MS/MS By matching 1 1 1 0.86945 0.85188 37.198 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86945 0.85188 NaN 1 0 Median 0.9975 0.85725 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52111 0.44869 NaN 1 0 Median 9789800 5168300 4621500 0 0 0 0 0 0 9056400 4794800 4261600 620600 300680 319930 0 0 0 112840 72808 40034 8787 4301 9129 43641;43642;43643 43644;43645;43646 43644 3 FEQIYLSKPTHWER HASGEVEEPPRYLLKFEQIYLSKPTHWERD KFEQIYLSKPTHWERDGAPSPMMPNEARLR K F E E R D 0 1 0 0 0 1 2 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 14 1 1832.921 C9J2Y9;P30876;A0A1W2PPT5 C9J2Y9 81 94 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3;4 6.6055E-05 77.776 By matching By MS/MS By matching 1 2 3 0.83602 0.9472 35.545 6 Median NaN NaN NaN 0 0 Median 1.5499 1.499 NaN 1 0 Median 0.83602 0.9472 5.4823 2 0 Median NaN NaN NaN 0 0 Median 0.72458 0.8137 38.472 3 0 Median NaN NaN NaN 0 0 Median 22009000 11187000 10822000 0 0 0 320450 127910 192540 15094000 7953300 7140500 0 0 0 6594900 3105800 3489100 0 0 0 8788 671 9130 43644;43645;43646;43647;43648;43649 43647;43648 43648 2 FEQLCLQQQEK TAAVLQGKLAEVSQRFEQLCLQQQEKESSL VSQRFEQLCLQQQEKESSLKKLLPQAEMFE R F E E K E 0 0 0 0 1 4 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1449.6922 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4197 4207 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00041058 93.598 By MS/MS 1 1.4046 1.2252 NaN 1 Median NaN NaN NaN 0 0 Median 1.4046 1.2252 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4939100 2031300 2907800 0 0 0 4939100 2031300 2907800 0 0 0 0 0 0 0 0 0 0 0 0 8789 1220 9131 43650 43649 43649 1 FERLETHMTPEMFR RVRPGFCFHLCSRARFERLETHMTPEMFRT RFERLETHMTPEMFRTPLHEIALSIKLLRL R F E F R T 0 2 0 0 0 0 3 0 1 0 1 0 2 2 1 0 2 0 0 0 0 0 14 1 1822.8495 Q08211 Q08211 782 795 DHX9 ATP-dependent RNA helicase A yes yes 3 0.0036406 33.265 By MS/MS By matching 1 1 1.1101 1.2761 18.828 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91844 1.117 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3417 1.4578 NaN 1 0 Median NaN NaN NaN 0 0 Median 9001200 3851400 5149700 0 0 0 0 0 0 6365300 2846800 3518500 0 0 0 2635900 1004600 1631300 0 0 0 8790 2736 9132 43651;43652 43650 43650 1 FESDPATHNEPGVR GIGKSTLMDTLFNTKFESDPATHNEPGVRL KFESDPATHNEPGVRLKARSYELQESNVRL K F E V R L 1 1 1 1 0 0 2 1 1 0 0 0 0 1 2 1 1 0 0 1 0 0 14 0 1554.7063 D6RGI3;D6RER5;Q9NVA2;D6RDU5;D6RDP1;D6R9Y6 D6RGI3 66 79 SEPT11 Septin-11 yes no 2;3 2.398E-08 99.011 By matching By MS/MS By MS/MS 1 3 5 0.9838 0.85782 7.3607 9 Median NaN NaN NaN 0 0 Median 0.95987 0.83339 NaN 1 0 Median 0.80674 0.78659 7.6238 3 0 Median 1.0294 0.86638 4.4991 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73425000 38897000 34527000 0 0 0 1559500 702750 856790 48085000 26392000 21693000 23780000 11803000 11977000 0 0 0 0 0 0 8791 822 9133 43653;43654;43655;43656;43657;43658;43659;43660;43661 43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661;43662;43663;43664;43665;43666;43667 43655 17 FESFPAGSTLIFYK SNGFKNGQNAAVVHRFESFPAGSTLIFYKY RFESFPAGSTLIFYKYCDHENAAFKDVALV R F E Y K Y 1 0 0 0 0 0 1 1 0 1 1 1 0 3 1 2 1 0 1 0 0 0 14 0 1605.8079 A0A0A0MSK5;Q5JTV8;H0Y4R4;J3KN66 J3KN66 497 510 TOR1AIP1 Torsin-1A-interacting protein 1 no no 2 0.00067863 68.893 By MS/MS 2 0.92647 0.90833 2.939 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92647 0.90833 2.939 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17878000 10640000 7237400 0 0 0 0 0 0 17878000 10640000 7237400 0 0 0 0 0 0 0 0 0 8792 182;1302 9134 43662;43663 43668;43669 43669 2 FESIAIAQEK LHSTERSCLLKELHRFESIAIAQEKLEAPP KELHRFESIAIAQEKLEAPPPTPGQLRYVF R F E E K L 2 0 0 0 0 1 2 0 0 2 0 1 0 1 0 1 0 0 0 0 0 0 10 0 1134.5921 Q6PI78 Q6PI78 94 103 TMEM65 Transmembrane protein 65 yes yes 2 0.0059454 64.711 By MS/MS 1 2.2794 2.1509 NaN 1 Median 2.2794 2.1509 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13257000 4360500 8896300 13257000 4360500 8896300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8793 3172 9135 43664 43670 43670 1 FESILPR ERGEEPGKSCGYSVRFESILPRPHASIMFC KSCGYSVRFESILPRPHASIMFCTVGVLLR R F E P R P 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 860.4756 Q08211 Q08211 475 481 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0046223 99.919 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 2 1.0339 1.0551 13.769 10 Median 0.94424 0.9389 31.542 2 0 Median 1.2673 1.0608 NaN 1 0 Median 1.0076 1.092 0.13516 2 0 Median 1.4201 1.2081 NaN 1 0 Median 0.98258 1.0043 1.2655 2 0 Median 1.1615 0.96981 11.141 2 0 Median 63394000 28750000 34644000 4514300 2140100 2374200 9583900 4428400 5155500 19875000 9047600 10828000 2861300 1036600 1824700 23586000 10845000 12741000 2973900 1253100 1720800 8794 2736 9136 43665;43666;43667;43668;43669;43670;43671;43672;43673;43674 43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683 43671 13 FESLEPEMNNQASR QIPEKLEDLEVIQHRFESLEPEMNNQASRV RFESLEPEMNNQASRVAVVNQIARQLMHSG R F E S R V 1 1 2 0 0 1 3 0 0 0 1 0 1 1 1 2 0 0 0 0 0 0 14 0 1650.7308 Q01082;A0A087WUZ3 Q01082 891 904 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.4011E-11 169.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 3 1 0.92057 0.83446 9.4552 13 Median 0.93537 0.90775 4.7799 2 0 Median 1.1129 0.92009 0.44696 2 1 Median 0.70533 0.77042 8.1624 5 1 Median 0.94516 0.83446 2.8996 3 0 Median NaN NaN NaN 0 0 Median 0.92057 0.76928 NaN 1 0 Median 205220000 112350000 92871000 28296000 13970000 14326000 29766000 14770000 14996000 126980000 73464000 53520000 18964000 9547300 9416400 0 0 0 1213400 601250 612140 8795 2681 9137;9138 43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685;43686;43687 43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702 43691 1368 18 FESPEVAER IKMENGKSKGCGVVKFESPEVAERACRMMN GCGVVKFESPEVAERACRMMNGMKLSGREI K F E E R A 1 1 0 0 0 0 3 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1062.4982 A0A087X0X3;P52272 A0A087X0X3 699 707 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.00042448 129.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 2 2 4 0.83376 0.74507 31.865 14 Median 1.1494 1.0878 NaN 1 0 Median 0.74298 0.62092 14.207 3 1 Median 1.0811 1.0288 31.658 3 0 Median 0.5757 0.49615 16.631 2 2 Median 0.63056 0.62464 6.3295 2 0 Median 1.2588 1.0219 8.7955 3 0 Median 234120000 136640000 97479000 8301700 3638800 4662800 11539000 5664800 5874700 63291000 35706000 27585000 12704000 8957900 3746100 119530000 73725000 45805000 18750000 8944500 9805000 8796 116 9139 43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702;43703 43703;43704;43705;43706;43707;43708;43709;43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720;43721;43722;43723;43724;43725;43726;43727;43728;43729;43730;43731;43732;43733;43734;43735 43709 33 FESVIHEFDPYFNYR AAVLSFSTRLFAVLRFESVIHEFDPYFNYR FESVIHEFDPYFNYRTTRFLAEEGFYKFHN R F E Y R T 0 1 1 1 0 0 2 0 1 1 0 0 0 3 1 1 0 0 2 1 0 0 15 0 1961.8948 P46977;A0A0C4DH80;E9PN73;E9PI32 P46977 41 55 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 3 0.02401 19.075 By MS/MS By MS/MS 2 2 0.92684 0.90439 7.0619 4 Median 0.89867 0.9072 2.5065 2 0 Median 1.0162 0.85331 10.287 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7598800 3921800 3677100 3772800 1987000 1785800 3826000 1934700 1891300 0 0 0 0 0 0 0 0 0 0 0 0 8797 2352 9140 43704;43705;43706;43707 43736;43737;43738 43738 3 FETEQALR QIDNARLAADDFRTKFETEQALRLSVEADI ADDFRTKFETEQALRLSVEADINGLRRVLD K F E L R L 1 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 992.49271 CON__Q04695;Q04695;F5GWP8;CON__P08727;P08727;C9JM50 CON__Q04695 173 180 KRT17;KRT19 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 0.0052175 77.058 By MS/MS 3 0.99875 0.85815 318.24 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99875 0.85815 318.24 3 0 Median 30291000 25377000 4913300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30291000 25377000 4913300 + 8798 768;752 9141 43708;43709;43710 43739;43740 43739 2 FETFQTITSYIK AFDQRHLDDINFDVRFETFQTITSYIKEMQ DVRFETFQTITSYIKEMQIVDVNYLIPVMH R F E I K E 0 0 0 0 0 1 1 0 0 2 0 1 0 2 0 1 3 0 1 0 0 0 12 0 1476.75 O75691 O75691 1450 1461 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00061097 68.657 By matching By matching By MS/MS By matching 1 1 2 1 1.2914 1.1979 61.133 5 Median 4.5016 4.6392 NaN 1 0 Median 1.2469 1.0866 NaN 1 0 Median 1.2088 1.3398 25.568 2 0 Median 1.2914 1.1979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9834700 2704100 7130600 5317700 721640 4596100 1135000 431830 703220 3219400 1475200 1744300 162560 75503 87054 0 0 0 0 0 0 8799 1691 9142 43711;43712;43713;43714;43715 43741;43742 43742 2 FEVAQVESLR ILRFIRREKEIAETRFEVAQVESLRYRQRV IAETRFEVAQVESLRYRQRVELLERELQEL R F E L R Y 1 1 0 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 10 0 1176.6139 P12270 P12270 1214 1223 TPR Nucleoprotein TPR yes yes 2 0.00041856 75.378 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1.1329 0.98664 24.005 7 Median 0.83813 0.80962 NaN 1 1 Median 1.3674 1.168 NaN 1 0 Median 0.89717 0.9465 NaN 1 0 Median 1.4852 1.3004 39.05 2 0 Median 0.8962 0.93848 NaN 1 1 Median 1.2742 1.0652 NaN 1 0 Median 32374000 15322000 17052000 4038300 1933900 2104400 6192700 2634200 3558400 11235000 6020100 5214900 7708000 3208400 4499600 2028700 1027500 1001200 1171000 497980 672990 8800 1978 9143 43716;43717;43718;43719;43720;43721;43722 43743;43744;43745;43746;43747;43748;43749;43750;43751;43752 43747 10 FEVGDIMLIR DTLVVTNAAGGLNPKFEVGDIMLIRDHINL GLNPKFEVGDIMLIRDHINLPGFSGQNPLR K F E I R D 0 1 0 1 0 0 1 1 0 2 1 0 1 1 0 0 0 0 0 1 0 0 10 0 1191.6322 P00491;G3V5M2;G3V393 P00491 124 133 PNP Purine nucleoside phosphorylase yes no 2 0.00038066 80.239 By MS/MS By MS/MS By MS/MS 1 2 1 1.2325 1.0717 9.5524 4 Median 1.1466 1.0808 NaN 1 0 Median 1.2325 1.0374 3.426 2 0 Median 1.3107 1.2627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38682000 16036000 22646000 5549200 2307700 3241500 32390000 13462000 18928000 742730 266430 476300 0 0 0 0 0 0 0 0 0 8801 1821 9144 43723;43724;43725;43726 43753;43754;43755 43753 3 FEVIPQSIR EDMEEDQEHTYRVVRFEVIPQSIRLEDLKA TYRVVRFEVIPQSIRLEDLKADEKSSCTLP R F E I R L 0 1 0 0 0 1 1 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1087.6026 A0A0C4DFM1;Q92544 A0A0C4DFM1 190 198 TM9SF4 Transmembrane 9 superfamily member 4 yes no 2 0.00088543 92.491 By MS/MS By MS/MS 1 2 0.92325 0.81399 6.7213 2 Median 0.79904 0.77621 NaN 1 0 Median 1.0668 0.85361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46902000 24802000 22100000 25103000 13916000 11186000 21799000 10885000 10914000 0 0 0 0 0 0 0 0 0 0 0 0 8802 229 9145 43727;43728;43729 43756;43757;43758;43759 43756 4 FEVIPQSIRLEDLK EDMEEDQEHTYRVVRFEVIPQSIRLEDLKA RFEVIPQSIRLEDLKADEKSSCTLPEGTNS R F E L K A 0 1 0 1 0 1 2 0 0 2 2 1 0 1 1 1 0 0 0 1 0 0 14 1 1685.9352 A0A0C4DFM1;Q92544 A0A0C4DFM1 190 203 TM9SF4 Transmembrane 9 superfamily member 4 yes no 3 0.070147 11.439 By MS/MS 1 0.79535 0.81766 NaN 1 Median 0.79535 0.81766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4087300 2279800 1807600 4087300 2279800 1807600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8803 229 9146 43730 43760 43760 1 FEVNPVWK LYGDADYLEERHRHRFEVNPVWKKCLEEQG EERHRHRFEVNPVWKKCLEEQGLKFVGQDV R F E W K K 0 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 2 0 0 8 0 1017.5284 P17812;A0A3B3IRI2;B4E1E0 P17812 482 489 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.017646 48.504 By MS/MS By MS/MS By matching 1 1 1 1.0693 0.99647 17.437 3 Median 1.3234 1.2676 NaN 1 0 Median 1.0693 0.90318 NaN 1 0 Median 0.93701 0.99647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14061000 6928100 7133100 4848900 2567600 2281300 6289600 2952500 3337200 2922700 1408000 1514700 0 0 0 0 0 0 0 0 0 8804 2046 9147 43731;43732;43733 43761;43762 43761 2 FEVQGLQPNGEEMTLK PRHQYYNQEWTLWDRFEVQGLQPNGEEMTL EVQGLQPNGEEMTLKQFLDYFKTEHKLEIT R F E L K Q 0 0 1 0 0 2 3 2 0 0 2 1 1 1 1 0 1 0 0 1 0 0 16 0 1818.8822 P22314;Q5JRR6 P22314 958 973 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 1.3882E-06 90.653 By MS/MS By matching 1 1 0.91474 0.82772 19.713 2 Median 0.74711 0.72003 NaN 1 0 Median 1.12 0.95152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27239000 13823000 13417000 21186000 11083000 10103000 6053100 2739200 3313900 0 0 0 0 0 0 0 0 0 0 0 0 8805 2100 9148 43734;43735 43763;43764 43763 2 FEVSPSYVK ELLSESRKTSNVCIRFEVSPSYVKGGPLRD SNVCIRFEVSPSYVKGGPLRDYQIRGLNWL R F E V K G 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 2 0 0 9 0 1054.5335 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 171 179 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.0062595 55.112 By MS/MS By MS/MS By MS/MS 1 1 2 1.0198 0.96977 14.982 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77693 0.83008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91631 0.94207 NaN 1 0 Median 1.28 1.0902 12.457 2 0 Median 20888000 12300000 8587800 0 0 0 0 0 0 11056000 6919400 4136400 0 0 0 6687700 4016800 2671000 3144000 1363600 1780500 8806 167;643 9149 43736;43737;43738;43739 43765;43766;43767 43765 3 FEWKPASSLR MKRIAFQFTPYSWVRFEWKPASSLRRWLAV YSWVRFEWKPASSLRRWLAVCGIILVFLLA R F E L R R 1 1 0 0 0 0 1 0 0 0 1 1 0 1 1 2 0 1 0 0 0 0 10 1 1219.635 Q9BVG9;A0A0J9YWQ2 Q9BVG9 303 312 PTDSS2 Phosphatidylserine synthase 2 yes no 3 0.0017473 50.353 By MS/MS By MS/MS 1 1 0.86073 0.84414 4.2563 2 Median 0.79375 0.81911 NaN 1 1 Median 0.93336 0.86993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11199000 4744500 6454100 6334000 2041600 4292400 4864600 2702900 2161700 0 0 0 0 0 0 0 0 0 0 0 0 8807 3853 9150 43740;43741 43768;43769 43769 2 FFADDTQAALTK SNLYNNIRLFEKGMKFFADDTQAALTKHLL GMKFFADDTQAALTKHLLKSVCTDITNLIF K F F T K H 3 0 0 2 0 1 0 0 0 0 1 1 0 2 0 0 2 0 0 0 0 0 12 0 1326.6456 O94874 O94874 560 571 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.01253 55.401 By MS/MS 1 1.1328 1.038 NaN 1 Median 1.1328 1.038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7968500 3143300 4825200 7968500 3143300 4825200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8808 1732 9151 43742 43770 43770 1 FFDANYDGK GKFQDNFEFVQWFKKFFDANYDGKDYDPVA VQWFKKFFDANYDGKDYDPVAARQGQETAV K F F G K D 1 0 1 2 0 0 0 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 9 0 1075.4611 Q15691;Q9UPY8;C9JB30 Q15691 114 122 MAPRE1;MAPRE3 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 3 no no 2 0.00091857 90.657 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1675 1.033 7.1299 5 Median 1.222 1.1424 NaN 1 0 Median 1.1877 0.9975 NaN 1 0 Median 1.126 1.0779 6.0107 2 0 Median 1.161 0.97418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45919000 20405000 25514000 7691800 3112000 4579800 6429100 3006600 3422500 23851000 10750000 13100000 7947400 3535900 4411500 0 0 0 0 0 0 8809 2963;686 9152 43743;43744;43745;43746;43747 43771;43772;43773;43774;43775 43774 5 FFDANYDGKDYDPVAAR GKFQDNFEFVQWFKKFFDANYDGKDYDPVA DANYDGKDYDPVAARQGQETAVAPSLVAPA K F F A R Q 3 1 1 4 0 0 0 1 0 0 0 1 0 2 1 0 0 0 2 1 0 0 17 1 1962.8748 Q15691 Q15691 114 130 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2;3 3.2571E-14 166.48 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 1.0414 0.99425 10.979 11 Median 1.0414 1.0507 8.4035 3 0 Median 1.106 1.0122 5.2346 2 0 Median 1.0705 1.1547 15.514 3 0 Median 0.99835 0.94216 4.2939 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 144360000 67346000 77019000 26236000 12109000 14127000 4986000 2387900 2598100 103340000 48165000 55177000 9800700 4684100 5116600 0 0 0 0 0 0 8810 2963 9153 43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758 43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786 43780 11 FFDDDLLVSTSR MPASVLTGNVIIETKFFDDDLLVSTSRVRL ETKFFDDDLLVSTSRVRLFYV_________ K F F S R V 0 1 0 3 0 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 0 0 12 0 1413.6776 O43924 O43924 133 144 PDE6D Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta yes yes 2 0.0027632 74.162 By MS/MS 2 1.0777 1.0906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0777 1.0906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2455600 1033800 1421900 0 0 0 0 0 0 2455600 1033800 1421900 0 0 0 0 0 0 0 0 0 8811 1601 9154 43759;43760 43787;43788 43788 2 FFDDPMLLELAK TRRRKGLSEDVSISKFFDDPMLLELAKQDV ISKFFDDPMLLELAKQDVVLNYPM______ K F F A K Q 1 0 0 2 0 0 1 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 12 0 1437.7214 Q15029;K7EP67 Q15029 952 963 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0021811 49.35 By matching By MS/MS By matching 1 3 1 1.2479 1.0482 18.587 5 Median 1.4587 1.4514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96756 1.0482 18.301 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2668 1.0375 NaN 1 0 Median 16987000 8579500 8408000 179750 62487 117260 0 0 0 14756000 7517300 7239100 0 0 0 0 0 0 2051300 999720 1051600 8812 2917 9155 43761;43762;43763;43764;43765 43789 43789 1 FFDEESYSLLR SLDHKSAHAGTYEVRFFDEESYSLLRKAQR YEVRFFDEESYSLLRKAQRNNEDISIIPPL R F F L R K 0 1 0 1 0 0 2 0 0 0 2 0 0 2 0 2 0 0 1 0 0 0 11 0 1404.6561 P51571;A6NLM8 P51571 106 116 SSR4 Translocon-associated protein subunit delta yes no 2 1.1952E-05 156.92 By MS/MS By MS/MS By matching By matching 2 1 1 2 1.3295 1.1363 20.718 6 Median NaN NaN NaN 0 0 Median 1.3591 1.1363 0.75156 2 0 Median 1.2513 1.2637 NaN 1 0 Median 1.3188 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2086 0.93536 37.885 2 0 Median 52167000 22529000 29637000 0 0 0 10692000 4368300 6323900 39203000 17216000 21987000 291570 123090 168480 0 0 0 1979900 822390 1157500 8813 2435 9156 43766;43767;43768;43769;43770;43771 43790;43791;43792;43793 43791 4 FFDEESYSLLRK SLDHKSAHAGTYEVRFFDEESYSLLRKAQR EVRFFDEESYSLLRKAQRNNEDISIIPPLF R F F R K A 0 1 0 1 0 0 2 0 0 0 2 1 0 2 0 2 0 0 1 0 0 0 12 1 1532.7511 P51571;A6NLM8 P51571 106 117 SSR4 Translocon-associated protein subunit delta yes no 3 0.019862 36.284 By MS/MS 2 1.124 1.1721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.124 1.1721 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3059800 1423100 1636700 0 0 0 0 0 0 3059800 1423100 1636700 0 0 0 0 0 0 0 0 0 8814 2435 9157 43772;43773 43794;43795 43794 2 FFDGELTK RVKTLAMDTILANARFFDGELTKVPTMALT TILANARFFDGELTKVPTMALTVGVGTVMD R F F T K V 0 0 0 1 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 955.4651 P46926;D6RFF8;D6RAY7;D6R9P4 P46926 173 180 GNPDA1 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase yes no 2 0.023904 43.808 By MS/MS By MS/MS 1 2 1.2705 1.0897 4.1205 3 Median 1.2705 1.1609 NaN 1 0 Median 1.2718 1.0821 0.99812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30831000 13237000 17594000 16193000 6875000 9318200 14637000 6361900 8275600 0 0 0 0 0 0 0 0 0 0 0 0 8815 2348 9158 43774;43775;43776 43796;43797;43798 43797 3 FFDHSGTLVMDAYEPEISR TKQQREAEFTKSIAKFFDHSGTLVMDAYEP SGTLVMDAYEPEISRLHDSLAIERKIK___ K F F S R L 1 1 0 2 0 0 2 1 1 1 1 0 1 2 1 2 1 0 1 1 0 0 19 0 2213.0099 A0A087WUC6;E9PI68;Q15005;E9PL01;E9PRB9 A0A087WUC6 197 215 SPCS2 Signal peptidase complex subunit 2 yes no 3 7.77E-05 53.554 By MS/MS By MS/MS 1 1 1.0838 0.97114 10.293 2 Median 1.1045 1.0445 NaN 1 1 Median 1.0635 0.90297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8755900 3820700 4935100 6792900 2962700 3830200 1962900 857990 1104900 0 0 0 0 0 0 0 0 0 0 0 0 8816 29 9159 43777;43778 43799;43800;43801 43799 3 FFDTELENLER QMHKRFEQEINAKKKFFDTELENLERQQKQ AKKKFFDTELENLERQQKQQVEKMEQDHAV K F F E R Q 0 1 1 1 0 0 3 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 11 0 1411.662 O94804 O94804 608 618 STK10 Serine/threonine-protein kinase 10 yes yes 2 0.00018924 76.465 By MS/MS By matching 1 1 1.055 1.0374 11.628 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.1263 NaN 1 0 Median 1.0766 0.95555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1923100 927690 995370 0 0 0 0 0 0 1770100 856940 913180 152940 70747 82196 0 0 0 0 0 0 8817 1725 9160 43779;43780 43802;43803 43803 2 FFDTNTSVLMK VIGCLDLILKWLTLRFFDTNTSVLMKALEY LTLRFFDTNTSVLMKALEYLKLLFTLLSEE R F F M K A 0 0 1 1 0 0 0 0 0 0 1 1 1 2 0 1 2 0 0 1 0 0 11 0 1301.6326 Q14008 Q14008 1253 1263 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0079286 41.448 By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1.1912 1.1323 27.34 6 Median 1.8247 1.7568 NaN 1 0 Median 1.3769 1.1959 NaN 1 0 Median 1.1937 1.3153 NaN 1 0 Median 1.0489 0.9214 21.425 2 0 Median NaN NaN NaN 0 0 Median 1.1556 0.96567 NaN 1 0 Median 28190000 12719000 15470000 3838700 1284000 2554700 823380 358340 465040 18351000 8730100 9621300 4735300 2150500 2584800 0 0 0 440900 196500 244400 8818 2850 9161 43781;43782;43783;43784;43785;43786 43804 43804 1 FFEDYGLFMR FFIDQSKKDAEKYAKFFEDYGLFMREGIVT EKYAKFFEDYGLFMREGIVTATEQEVKEDI K F F M R E 0 1 0 1 0 0 1 1 0 0 1 0 1 3 0 0 0 0 1 0 0 0 10 0 1323.5958 I3L0K7;Q12931 Q12931 440 449 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.00035707 106.04 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 2 1.3373 1.2174 33.471 12 Median 1.2136 1.1824 15.671 5 0 Median 1.3412 1.2021 7.0049 4 0 Median 1.2476 1.3153 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6467 2.7416 10.938 2 0 Median NaN NaN NaN 0 0 Median 37038000 16088000 20950000 23314000 10497000 12817000 10834000 4530000 6304500 1506000 698550 807440 0 0 0 1383500 362990 1020500 0 0 0 8819 2771;1269 9162 43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797;43798 43805;43806;43807;43808;43809;43810;43811;43812;43813;43814 43805 10 FFEHEVK EGAGSNPGDKTLEDRFFEHEVKLNKLAFLN GDKTLEDRFFEHEVKLNKLAFLNQFHFGVF R F F V K L 0 0 0 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 7 0 934.45487 F5GYQ1;P61421;J3QL14;R4GN72 F5GYQ1 335 341 ATP6V0D1 V-type proton ATPase subunit d 1 yes no 2 0.015644 70.912 By MS/MS 1 1.3133 1.1043 NaN 1 Median NaN NaN NaN 0 0 Median 1.3133 1.1043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3167700 1219500 1948300 0 0 0 3167700 1219500 1948300 0 0 0 0 0 0 0 0 0 0 0 0 8820 1012 9163 43799 43815;43816 43815 2 FFEHFIEGGR YLRLLTSGYLQRESKFFEHFIEGGRTVKEF QRESKFFEHFIEGGRTVKEFCQQEVEPMCK K F F G R T 0 1 0 0 0 0 2 2 1 1 0 0 0 3 0 0 0 0 0 0 0 0 10 0 1237.588 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8;F5H3F0 J3KR44 190 199 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2;3 0.00041856 96.948 By MS/MS By MS/MS By MS/MS 3 2 2 1.0529 0.97978 5.7403 7 Median 1.0243 0.95774 6.1218 3 0 Median 1.2092 1.0078 4.3467 2 0 Median 1.023 1.0104 4.3486 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68687000 32065000 36621000 49708000 23481000 26227000 11476000 5062800 6413600 7502800 3521600 3981200 0 0 0 0 0 0 0 0 0 8821 1322 9164 43800;43801;43802;43803;43804;43805;43806 43817;43818;43819;43820;43821;43822;43823;43824;43825;43826 43819 10 FFENYNQSLEK LALLSAVSASIKDEKFFENYNQSLEKWSLS KDEKFFENYNQSLEKWSLSQAVTGLIDTGR K F F E K W 0 0 2 0 0 1 2 0 0 0 1 1 0 2 0 1 0 0 1 0 0 0 11 0 1417.6514 Q6PGP7 Q6PGP7 1316 1326 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.00013415 143.7 By MS/MS By matching By matching 1 1 1 1.1775 1.0525 12.175 3 Median 0.88826 0.85903 NaN 1 0 Median 1.2271 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1775 1.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12942000 7116700 5825100 11379000 6418900 4960000 926440 450960 475480 0 0 0 636510 246870 389640 0 0 0 0 0 0 8822 3169 9165 43807;43808;43809 43827;43828 43828 2 FFESFGDLSSADAILGNPK EALGRLLVVYPWTQRFFESFGDLSSADAIL FGDLSSADAILGNPKVKAHGKKVLDSFCEG R F F P K V 2 0 1 2 0 0 1 2 0 1 2 1 0 3 1 3 0 0 0 0 0 0 19 0 2013.9684 CON__Q3SX09 CON__Q3SX09 96 114 yes yes 2 1.48E-46 132.47 By MS/MS By MS/MS 1 1 0.050449 0.050772 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.050449 0.050772 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292700 1238900 53810 0 0 0 0 0 0 1292700 1238900 53810 0 0 0 0 0 0 0 0 0 + 8823 777 9166 43810;43811 43829;43830 43830 2 FFETSAK PKGKGEQIAREHGIRFFETSAKANINIEKA IAREHGIRFFETSAKANINIEKAFLTLAED R F F A K A 1 0 0 0 0 0 1 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 7 0 828.40177 P61026;P51153;A0A087WWB9 P61026 148 154 RAB10;RAB13 Ras-related protein Rab-10;Ras-related protein Rab-13 no no 2 0.027519 51.787 By matching By MS/MS 1 1 1.3747 1.2964 18.594 2 Median 1.2156 1.1367 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5546 1.4785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7396700 2936100 4460600 3807600 1690000 2117600 0 0 0 3589100 1246100 2343000 0 0 0 0 0 0 0 0 0 8824 2540;2430 9167 43812;43813 43831 43831 1 FFEVILIDPFHK RVLNSYWVGEDSTYKFFEVILIDPFHKAIR TYKFFEVILIDPFHKAIRRNPDTQWITKPV K F F H K A 0 0 0 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 0 12 0 1503.8126 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 129 140 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 0.0027679 73.721 By matching By matching By matching By MS/MS 1 2 1 2 1.0574 0.89409 1.859 6 Median 0.96858 0.89485 NaN 1 0 Median 1.031 0.89273 0.094867 2 0 Median NaN NaN NaN 0 0 Median 1.1543 0.92157 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0734 0.89538 3.0995 2 1 Median 57272000 28311000 28961000 46799000 23441000 23358000 3018400 1423300 1595100 0 0 0 74502 38207 36295 0 0 0 7379900 3408300 3971700 8825 2555 9168 43814;43815;43816;43817;43818;43819 43832;43833 43833 2 FFFDPSAR TQTSQVLTAVDKDNKFFFDPSARDQVTYQQ AVDKDNKFFFDPSARDQVTYQQLRERCVCD K F F A R D 1 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 8 0 985.46577 P58107;A0A075B730 P58107 1402 1409 EPPK1 Epiplakin yes no 2 0.0030883 101.64 By MS/MS By matching By matching 2 3 1 1.2279 1.1029 14.301 6 Median 1.2869 1.2696 9.7798 2 0 Median 1.2132 1.0267 16.967 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2429 1.0199 NaN 1 0 Median 17422000 7226300 10195000 13026000 5253000 7772600 4263900 1903300 2360700 0 0 0 0 0 0 0 0 0 132270 69996 62273 8826 2520 9169 43820;43821;43822;43823;43824;43825 43834;43835 43835 2 FFFDVGSNK AELPEGTSLTVDNKRFFFDVGSNKYGVFMR TVDNKRFFFDVGSNKYGVFMRVSEVKPTYR R F F N K Y 0 0 1 1 0 0 0 1 0 0 0 1 0 3 0 1 0 0 0 1 0 0 9 0 1059.5025 Q00577 Q00577 231 239 PURA Transcriptional activator protein Pur-alpha yes yes 2 0.0025948 70.919 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 2 1.1218 0.93081 16.385 7 Median 0.99373 0.92857 NaN 1 0 Median 1.1289 0.9736 NaN 1 0 Median 1.1218 1.1908 NaN 1 0 Median 1.2299 1.0329 NaN 1 0 Median 0.67377 0.70122 NaN 1 0 Median 1.0627 0.89161 6.0849 2 0 Median 14353000 7141400 7211600 6592000 3453000 3139000 1964700 959930 1004700 4683500 2194400 2489100 424500 196240 228260 278370 138780 139600 410060 199140 210910 8827 2676 9170 43826;43827;43828;43829;43830;43831;43832 43836;43837;43838;43839 43836 4 FFGDSAASMAIKNPK RRKTPVIVTLKENERFFGDSAASMAIKNPK FFGDSAASMAIKNPKATLRYFQHLLGKQAD R F F P K A 3 0 1 1 0 0 0 1 0 1 0 2 1 2 1 2 0 0 0 0 0 0 15 1 1582.7814 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06;A0A087WW13 A0A087X054 80 94 HYOU1 Hypoxia up-regulated protein 1 yes no 3 0.0010582 37.156 By MS/MS 1 1.1573 1.2159 NaN 1 Median 1.1573 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6595900 2970800 3625100 6595900 2970800 3625100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8828 101 9171 43833 43840 43840 1 FFGEALEFNSHPSNSIGESK GQNTVEPHKDPDATRFFGEALEFNSHPSNS LEFNSHPSNSIGESKGLARELGTCSSVPPR R F F S K G 1 0 2 0 0 0 3 2 1 1 1 1 0 3 1 4 0 0 0 0 0 0 20 0 2196.0124 Q92610;H0YM74 Q92610 237 256 ZNF592 Zinc finger protein 592 yes no 3 1.3243E-10 88.264 By MS/MS By matching 1 1 0.36237 0.35576 119.42 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77277 0.8277 NaN 1 0 Median 0.16992 0.15291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8399700 4209200 4190500 0 0 0 0 0 0 8059800 3981700 4078100 339990 227560 112420 0 0 0 0 0 0 8829 3543 9172 43834;43835 43841 43841 1 FFGEDAEIAAR HKDAVLCVECGYKYRFFGEDAEIAARELNI YKYRFFGEDAEIAARELNIYCHLDHNFMTA R F F A R E 3 1 0 1 0 0 2 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 11 0 1224.5775 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 258 268 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.00054228 67.563 By matching By MS/MS By matching 2 2 1 0.91155 0.80546 25.23 5 Median NaN NaN NaN 0 0 Median 0.73234 0.70315 19.212 2 0 Median NaN NaN NaN 0 0 Median 1.1305 0.97073 22.647 2 0 Median NaN NaN NaN 0 0 Median 0.609 0.62481 NaN 1 0 Median 5596400 2480400 3116000 0 0 0 1786900 782300 1004600 0 0 0 3602700 1578800 2023900 0 0 0 206880 119290 87586 8830 2080 9173 43836;43837;43838;43839;43840 43842;43843 43843 2 FFGGYVPEMVLTPDDQR NLGNFINRAGMFVSKFFGGYVPEMVLTPDD GGYVPEMVLTPDDQRLLAHVTLELQHYHQL K F F Q R L 0 1 0 2 0 1 1 2 0 0 1 0 1 2 2 0 1 0 1 2 0 0 17 0 1969.9244 P56192;H0YIP0 P56192 664 680 MARS Methionine--tRNA ligase, cytoplasmic yes no 2;3 4.8056E-06 84.289 By MS/MS By matching By matching By matching 2 1 1 1 0.86229 0.8563 13.001 5 Median 0.92488 0.91326 9.1088 2 0 Median 0.86229 0.76538 NaN 1 0 Median 0.84888 0.91032 NaN 1 0 Median 0.79265 0.70583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10021000 5096500 4925000 8200100 4152000 4048100 165730 42938 122800 1540700 845220 695430 114970 56330 58645 0 0 0 0 0 0 8831 2508 9174 43841;43842;43843;43844;43845 43844;43845 43844 2 FFGNLMDASK SATKIALYETPTGWKFFGNLMDASKLSLCG PTGWKFFGNLMDASKLSLCGEESFGTGSDH K F F S K L 1 0 1 1 0 0 0 1 0 0 1 1 1 2 0 1 0 0 0 0 0 0 10 0 1128.5274 P36871;A0A3B3ITK7 P36871 361 370 PGM1 Phosphoglucomutase-1 yes no 2 0.001604 64.04 By MS/MS By matching By matching By matching 1 2 1 1 1.2255 1.0423 9.9114 5 Median 1.0499 0.97788 NaN 1 0 Median 1.2284 1.053 1.436 2 0 Median 1.3181 1.2661 NaN 1 0 Median 1.2255 1.0214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49063000 23133000 25929000 29158000 14199000 14959000 17437000 7767800 9669100 2373700 1121800 1251800 94131 44365 49766 0 0 0 0 0 0 8832 2262 9175 43846;43847;43848;43849;43850 43846;43847 43847 2 FFGNSWAETYR KYKYEDKDGKQPVGRFFGNSWAETYRNRFW PVGRFFGNSWAETYRNRFWKEHHFEAIALV R F F Y R N 1 1 1 0 0 0 1 1 0 0 0 0 0 2 0 1 1 1 1 0 0 0 11 0 1376.6149 H3BLU7;O43488 H3BLU7 206 216 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 2 0.00017515 107.15 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.0512 0.98672 11.74 5 Median 1.048 0.98137 0.76883 2 0 Median 1.4416 1.1992 NaN 1 0 Median 0.88235 0.86489 NaN 1 0 Median 1.2101 1.0192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57698000 27467000 30231000 48527000 23567000 24960000 6633700 2879000 3754700 2407800 962490 1445300 128840 58149 70691 0 0 0 0 0 0 8833 1206 9176 43851;43852;43853;43854;43855 43848;43849;43850 43848 3 FFGTEDHAWIK KDLKKPRGKKCFFVKFFGTEDHAWIKVEQL FFVKFFGTEDHAWIKVEQLKPYHAHKEEMI K F F I K V 1 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 1 1 0 0 0 0 11 0 1349.6404 Q49A26;K7EMM8;K7EQB2 Q49A26 46 56 GLYR1 Putative oxidoreductase GLYR1 yes no 3 0.036033 19.659 By MS/MS By matching 1 1 0.79626 0.77953 21.592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90521 0.90811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70043 0.66915 NaN 1 0 Median NaN NaN NaN 0 0 Median 7921900 4187500 3734400 0 0 0 0 0 0 5110500 2665000 2445400 0 0 0 2811400 1522400 1289000 0 0 0 8834 3018 9177 43856;43857 43851 43851 1 FFHETEAPRPK EETIKVWKQRTHVMRFFHETEAPRPKDFLS HVMRFFHETEAPRPKDFLSKFYVGHDP___ R F F P K D 1 1 0 0 0 0 2 0 1 0 0 1 0 2 2 0 1 0 0 0 0 0 11 1 1357.6779 P56556;A0A2Y9D025;R4GN43 P56556 106 116 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes no 2;3 5.0211E-05 93.258 By matching By MS/MS By MS/MS 3 2 2 0.7889 0.77359 24.239 7 Median 0.70336 0.68971 8.2976 3 0 Median 1.2291 1.0852 15.304 2 0 Median 0.79142 0.82457 30.434 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26681000 13848000 12833000 5290600 3115200 2175500 12802000 5700400 7101200 8588400 5032500 3555900 0 0 0 0 0 0 0 0 0 8835 408 9178 43858;43859;43860;43861;43862;43863;43864 43852;43853;43854;43855;43856;43857 43856 6 FFIDQSK LIRKLRDVLQQRLIKFFIDQSKKDAEKYAK VLQQRLIKFFIDQSKKDAEKYAKFFEDYGL K F F S K K 0 0 0 1 0 1 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 7 0 883.44397 I3L0K7;Q12931 Q12931 425 431 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.0021797 114.19 By MS/MS By MS/MS By MS/MS 1 2 2 1.2077 1.111 18.021 4 Median 1.1665 1.0952 NaN 1 0 Median 1.1384 0.97952 19.843 2 0 Median 1.2504 1.3153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37518000 15637000 21880000 11692000 5088900 6602900 19911000 8425300 11486000 5914900 2123100 3791800 0 0 0 0 0 0 0 0 0 8836 2771;1269 9179 43865;43866;43867;43868;43869 43858;43859;43860;43861;43862 43859 5 FFIDQSKK LIRKLRDVLQQRLIKFFIDQSKKDAEKYAK LQQRLIKFFIDQSKKDAEKYAKFFEDYGLF K F F K K D 0 0 0 1 0 1 0 0 0 1 0 2 0 2 0 1 0 0 0 0 0 0 8 1 1011.5389 I3L0K7;Q12931 Q12931 425 432 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.0040202 86.953 By MS/MS By MS/MS 1 1 0.96492 0.90591 7.0979 2 Median 0.9132 0.86156 NaN 1 1 Median 1.0196 0.95253 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14050000 7459300 6590200 5699600 3393000 2306600 8349900 4066300 4283600 0 0 0 0 0 0 0 0 0 0 0 0 8837 2771;1269 9180 43870;43871 43863;43864 43863 2 FFIFALTPQQVR PTSLVQSSIQRFQEKFFIFALTPQQVREIC QEKFFIFALTPQQVREICISRDFLPGGRRD K F F V R E 1 1 0 0 0 2 0 0 0 1 1 0 0 3 1 0 1 0 0 1 0 0 12 0 1465.8082 A0A087WUY7;O75928 A0A087WUY7 207 218 PIAS2 E3 SUMO-protein ligase PIAS2 yes no 2 0.00061626 67.563 By MS/MS 2 0.7027 0.71842 14.647 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7027 0.71842 14.647 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1239400 698560 540790 0 0 0 0 0 0 1239400 698560 540790 0 0 0 0 0 0 0 0 0 8838 37 9181 43872;43873 43865;43866 43865 2 FFIGQFSDDR TRAYGVCFVDTSLGKFFIGQFSDDRHCSRF TSLGKFFIGQFSDDRHCSRFRTLVAHYPPV K F F D R H 0 1 0 2 0 1 0 1 0 1 0 0 0 3 0 1 0 0 0 0 0 0 10 0 1230.5669 P52701;A0A494C0M1;A0A087WWJ1 P52701 568 577 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0061875 49.418 By matching By matching By MS/MS By matching 1 1 2 1 0.96958 0.92678 17.804 5 Median 0.96958 0.92678 NaN 1 0 Median 0.89418 0.7974 NaN 1 0 Median 0.92925 0.99525 24.436 2 0 Median 1.2984 1.1379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8759500 3991300 4768200 4952700 2257800 2694900 99439 51916 47523 3448800 1572500 1876300 258530 109050 149480 0 0 0 0 0 0 8839 2453 9182 43874;43875;43876;43877;43878 43867;43868 43867 2 FFLGNQFGDSQQLR AKRFQVEQIGENKYRFFLGNQFGDSQQLRL RFFLGNQFGDSQQLRLVRILRSTVMVRVGG R F F L R L 0 1 1 1 0 3 0 2 0 0 2 0 0 3 0 1 0 0 0 0 0 0 14 0 1655.8056 H3BPE1;H3BQK9;H0Y314;H0Y4F5;E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 H3BPE1 7252 7265 MACF1;DST Dystonin no no 2 1.5462E-38 155.11 By MS/MS By MS/MS 2 1 0.96491 0.97739 3.0739 2 Median 0.98439 0.95637 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.9458 0.99886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34538000 16753000 17785000 24740000 11938000 12802000 0 0 0 9798200 4814400 4983800 0 0 0 0 0 0 0 0 0 8840 1220;934 9183 43879;43880;43881 43869;43870;43871 43870 3 FFLIEEK KWIKILEAKTKQLPKFFLIEEKCRFLSNFS AKTKQLPKFFLIEEKCRFLSNFSAQTAEVE K F F E K C 0 0 0 0 0 0 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 7 0 924.49567 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3447 3453 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0083653 86.086 By MS/MS By matching 1 1 1.2535 1.2432 2.5283 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1418 1.2212 NaN 1 0 Median 1.3762 1.2656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10452000 4614600 5837100 0 0 0 0 0 0 10161000 4498500 5663000 290220 116110 174110 0 0 0 0 0 0 8841 991 9184 43882;43883 43872;43873 43872 2 FFLLENVR LVVSFLSYCDYYRPRFFLLENVRNFVSFKR CDYYRPRFFLLENVRNFVSFKRSMVLKLTL R F F V R N 0 1 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 1036.5706 P26358;K7ENW7 P26358 1262 1269 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.01208 55.676 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 5 3 2 1 1.0542 1.0037 27.143 13 Median 0.87436 0.87725 NaN 1 0 Median 0.88822 0.78379 NaN 1 0 Median 1.0542 1.1085 6.5065 5 0 Median 1.1066 0.96803 2.5155 3 0 Median 1.1371 1.155 72.003 2 0 Median 0.8177 0.67144 NaN 1 0 Median 38792000 19438000 19354000 1140300 631290 509000 462960 279940 183020 31254000 15642000 15612000 4718900 2218000 2500800 909400 462370 447030 306440 204380 102060 8842 2142 9185 43884;43885;43886;43887;43888;43889;43890;43891;43892;43893;43894;43895;43896 43874;43875;43876;43877;43878;43879;43880;43881 43875 8 FFLNQYSASVHSLDGFR VEPCRSDHWPLSDVRFFLNQYSASVHSLDG LNQYSASVHSLDGFRHQALWDRYMGTLRGC R F F F R H 1 1 1 1 0 1 0 1 1 0 2 0 0 3 0 3 0 0 1 1 0 0 17 0 1986.9588 O43427;H0YCE7 O43427 326 342 FIBP Acidic fibroblast growth factor intracellular-binding protein yes no 3 0.0054291 35.757 By MS/MS 2 0.78111 0.78885 9.1744 2 Median 0.78111 0.78885 9.1744 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3756500 1723700 2032800 3756500 1723700 2032800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8843 1572 9186 43897;43898 43882;43883 43882 2 FFLQGIQLNTILPDAR TVLLFQFGMNASSSRFFLQGIQLNTILPDA FLQGIQLNTILPDARDPAFKAANGSLRALQ R F F A R D 1 1 1 1 0 2 0 1 0 2 3 0 0 2 1 0 1 0 0 0 0 0 16 0 1845.0149 P11279 P11279 299 314 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 2 7.3218E-47 223.31 By MS/MS By MS/MS 3 3 1.0505 0.98125 6.5858 6 Median 1.0301 1.0299 5.8723 3 1 Median 1.073 0.91751 6.5563 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11751000 5667100 6083400 3851900 1881400 1970500 7898600 3785700 4112900 0 0 0 0 0 0 0 0 0 0 0 0 8844 1961 9187 43899;43900;43901;43902;43903;43904 43884;43885;43886;43887;43888 43887 5 FFLSHPAYR EGKKDIRAALAAERKFFLSHPAYRHMADRM LAAERKFFLSHPAYRHMADRMGTPHLQKTL K F F Y R H 1 1 0 0 0 0 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 0 9 0 1136.5767 P50570 P50570 258 266 DNM2 Dynamin-2 no no 2 0.00091162 91.041 By MS/MS 1 2.3687 2.5202 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3687 2.5202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7385600 3306700 4078800 0 0 0 0 0 0 7385600 3306700 4078800 0 0 0 0 0 0 0 0 0 8845 2417 9188 43905 43889;43890 43890 2 FFMGNQVLK FSVLGFCKSSQVQRRFFMGNQVLKVFAARD SQVQRRFFMGNQVLKVFAARDDEAAAVALS R F F L K V 0 0 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 9 0 1082.5583 P13010 P13010 355 363 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0025402 71.296 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 7 4 1 1.1889 1.1265 20.161 20 Median 1.2407 1.1012 16.9 4 0 Median 1.3415 1.1811 10.798 4 0 Median 1.0732 1.1092 10.949 7 1 Median 1.3611 1.1869 39.49 4 0 Median NaN NaN NaN 0 0 Median 1.1356 0.93927 NaN 1 0 Median 322710000 150880000 171830000 97198000 44821000 52376000 37791000 15367000 22424000 177590000 86426000 91163000 8750300 3612000 5138300 0 0 0 1386200 654250 731950 8846 1986 9189;9190 43906;43907;43908;43909;43910;43911;43912;43913;43914;43915;43916;43917;43918;43919;43920;43921;43922;43923;43924;43925 43891;43892;43893;43894;43895;43896;43897;43898;43899;43900;43901;43902;43903;43904;43905;43906 43901 768 16 FFNIPFLQLQR ESSMKNSFGLKYLHKFFNIPFLQLQRETLL YLHKFFNIPFLQLQRETLLRQLETNQLDMD K F F Q R E 0 1 1 0 0 2 0 0 0 1 2 0 0 3 1 0 0 0 0 0 0 0 11 0 1421.782 Q3YEC7;F2Z2T0;G3V154 Q3YEC7 226 236 RABL6 Rab-like protein 6 yes no 2 0.0081755 40.987 By MS/MS By MS/MS By MS/MS 4 2 1 0.91127 0.87955 30.209 7 Median 0.69272 0.6748 26.983 4 0 Median 1.068 0.93705 1.8692 2 0 Median 1.064 1.138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14342000 7360500 6981200 10650000 5698800 4950700 2502400 1148300 1354200 1189700 513450 676290 0 0 0 0 0 0 0 0 0 8847 3014 9191 43926;43927;43928;43929;43930;43931;43932 43907;43908;43909;43910;43911;43912;43913;43914;43915 43910 9 FFPASADR NEVEAVKVHSFPTLKFFPASADRTVIDYNG HSFPTLKFFPASADRTVIDYNGERTLDGFK K F F D R T 2 1 0 1 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 8 0 909.43447 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 445 452 P4HB Protein disulfide-isomerase yes no 2 0.0069954 68.915 By MS/MS By MS/MS 1 1 1.1758 1.0622 1.0383 2 Median 1.0878 1.0544 NaN 1 0 Median 1.271 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14643000 7425400 7218100 5516400 3228400 2287900 9127100 4197000 4930100 0 0 0 0 0 0 0 0 0 0 0 0 8848 1883 9192 43933;43934 43916;43917;43918;43919;43920;43921 43919 6 FFPASFPNR GILALSHTISPFMNKFFPASFPNRQYQLLF SPFMNKFFPASFPNRQYQLLFTQGSGENKE K F F N R Q 1 1 1 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 9 0 1081.5345 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72 A0A3B3IUB5 171 179 HM13 Minor histocompatibility antigen H13 yes no 2 0.0039055 79.469 By MS/MS By MS/MS By matching 3 3 1 1.2728 1.0443 30.47 7 Median 1.2728 1.2374 24.195 3 2 Plateau 1.4268 1.1064 8.0171 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.406 2.0584 NaN 1 0 Median 74097000 28563000 45534000 37491000 14653000 22839000 36357000 13849000 22508000 0 0 0 0 0 0 0 0 0 249130 62075 187050 8849 444 9193 43935;43936;43937;43938;43939;43940;43941 43922;43923;43924;43925;43926;43927;43928;43929;43930 43922 9 FFPLESWQIGK LTKELALGQDRILIRFFPLESWQIGKIGTV ILIRFFPLESWQIGKIGTVMTFL_______ R F F G K I 0 0 0 0 0 1 1 1 0 1 1 1 0 2 1 1 0 1 0 0 0 0 11 0 1350.6972 P30046;J3KQ18;H7C342 P30046 100 110 DDT D-dopachrome decarboxylase yes no 2 0.00013666 97.635 By MS/MS By MS/MS By MS/MS 1 3 1 1.1859 0.97533 9.1237 5 Median 0.93951 0.85066 NaN 1 0 Median 1.2611 1.0414 4.047 3 0 Median 0.93882 0.90297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69140000 32865000 36275000 25010000 12598000 12411000 37840000 17177000 20663000 6290500 3089300 3201200 0 0 0 0 0 0 0 0 0 8850 2182 9194 43942;43943;43944;43945;43946 43931;43932;43933;43934;43935;43936;43937;43938;43939;43940;43941;43942;43943;43944;43945;43946;43947 43942 17 FFPLIEVNK SGEIRATAFNEQVDKFFPLIEVNKVYYFSK NEQVDKFFPLIEVNKVYYFSKGTLKIANKQ K F F N K V 0 0 1 0 0 0 1 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 9 0 1105.6172 P27694;I3L4R8 P27694 245 253 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.024906 37.727 By MS/MS By matching 1 2 0.80421 0.84678 69.476 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80421 0.84678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54617 0.48385 86.981 2 0 Median 5757100 3536000 2221000 0 0 0 0 0 0 5210700 3144700 2066000 0 0 0 0 0 0 546360 391340 155020 8851 2156 9195 43947;43948;43949 43948 43948 1 FFQEENTEK DYIRTQIISKKINTKFFQEENTEKLKLKYY KKINTKFFQEENTEKLKLKYYNLMIQLDQH K F F E K L 0 0 1 0 0 1 3 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 0 1170.5193 O00232 O00232 213 221 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 2.5457E-05 126.52 By MS/MS By MS/MS By matching 2 1 1 1.1823 1.0464 14.762 4 Median 1.1008 1.0178 1.7177 2 2 Median 1.2546 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5504 1.3824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48359000 22542000 25817000 33321000 15940000 17381000 13492000 6053200 7439100 0 0 0 1545900 548880 996980 0 0 0 0 0 0 8852 1449 9196 43950;43951;43952;43953 43949;43950;43951;43952 43950 4 FFQEENTEKLK DYIRTQIISKKINTKFFQEENTEKLKLKYY INTKFFQEENTEKLKLKYYNLMIQLDQHEG K F F L K L 0 0 1 0 0 1 3 0 0 0 1 2 0 2 0 0 1 0 0 0 0 0 11 1 1411.6983 O00232 O00232 213 223 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2;3 0.00086307 77.662 By MS/MS 2 1.0643 1.0217 14.766 2 Median 1.0643 1.0217 14.766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10279000 4666900 5611900 10279000 4666900 5611900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8853 1449 9197 43954;43955 43953;43954;43955;43956 43953 4 FFQGMPEKPTTTVR ETLQLESAAEVGFVRFFQGMPEKPTTTVRL RFFQGMPEKPTTTVRLFDRGDFYTAHGEDA R F F V R L 0 1 0 0 0 1 1 1 0 0 0 1 1 2 2 0 3 0 0 1 0 0 14 1 1637.8236 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 22 35 MSH2 DNA mismatch repair protein Msh2 yes no 2;3 6.6611E-08 134.3 By MS/MS By matching By MS/MS By MS/MS 2 1 3 3 0.73521 0.83317 12.428 9 Median 0.6931 0.72289 3.4167 2 0 Median 0.96058 0.908 NaN 1 0 Median 0.68886 0.78063 4.5155 3 2 Median 0.97836 0.94022 9.604 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171540000 94841000 76695000 45667000 26584000 19083000 2577800 1262500 1315200 73647000 43083000 30564000 49645000 23912000 25733000 0 0 0 0 0 0 8854 2324 9198;9199 43956;43957;43958;43959;43960;43961;43962;43963;43964 43957;43958;43959;43960;43961;43962;43963;43964;43965;43966;43967;43968;43969;43970 43958 1058 14 FFQPTEMAAQDFFQR APQALTLKLPVTINKFFQPTEMAAQDFFQR FFQPTEMAAQDFFQRWKQLSLPQQEAQKIF K F F Q R W 2 1 0 1 0 3 1 0 0 0 0 0 1 4 1 0 1 0 0 0 0 0 15 0 1861.8458 O95782 O95782 864 878 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 3.0113E-06 91.03 By MS/MS By MS/MS By MS/MS 1 2 1 1.1073 1.1813 12.492 4 Median 0.99528 0.96052 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1073 1.1813 2.9942 2 0 Median NaN NaN NaN 0 0 Median 1.2096 1.2839 NaN 1 0 Median NaN NaN NaN 0 0 Median 17104000 8136400 8967800 7783700 3805200 3978500 0 0 0 8590200 3985200 4605000 0 0 0 730310 346060 384250 0 0 0 8855 1793 9200;9201 43965;43966;43967;43968 43971;43972;43973;43974;43975;43976;43977 43974 572 7 FFQPTEMASQDFFQR TFQNVSVQLPITLNKFFQPTEMASQDFFQR FFQPTEMASQDFFQRWKQLSNPQQEVQNIF K F F Q R W 1 1 0 1 0 3 1 0 0 0 0 0 1 4 1 1 1 0 0 0 0 0 15 0 1877.8407 O94973;A0A0G2JS82 O94973 826 840 AP2A2 AP-2 complex subunit alpha-2 yes no 2 2.354E-09 101.95 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.85503 0.89561 24.831 5 Median 0.67381 0.66149 31.118 2 0 Median 1.0745 0.97341 NaN 1 0 Median 0.84148 0.89561 NaN 1 0 Median 1.1394 0.94609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17353000 9424200 7929000 9685600 5240900 4444700 416190 257840 158350 7077300 3854100 3223200 174030 71369 102660 0 0 0 0 0 0 8856 1741 9202 43969;43970;43971;43972;43973 43978;43979;43980;43981 43981 4 FFQSHYFHR ENVPHNMTEKEFWTRFFQSHYFHRDRLNTG KEFWTRFFQSHYFHRDRLNTGSKDLFAECA R F F H R D 0 1 0 0 0 1 0 0 2 0 0 0 0 3 0 1 0 0 1 0 0 0 9 0 1267.5887 P32780;E9PI26 P32780 224 232 GTF2H1 General transcription factor IIH subunit 1 yes no 3 0.015327 47.198 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8857 2219 9203 43974 43982 43982 1 FFQSTGSLK AASSSAPARQAVLSRFFQSTGSLKSTSSST QAVLSRFFQSTGSLKSTSSSTGAADQVDPG R F F L K S 0 0 0 0 0 1 0 1 0 0 1 1 0 2 0 2 1 0 0 0 0 0 9 0 1013.5182 P20585;A0A590UKC9;A0A590UJN8 P20585 27 35 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.0030194 67.993 By MS/MS 1 0.54733 0.58874 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54733 0.58874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6821900 4317900 2503900 0 0 0 0 0 0 6821900 4317900 2503900 0 0 0 0 0 0 0 0 0 8858 2080 9204 43975 43983 43983 1 FFSEYEK HKLLSAEFLEQHYDRFFSEYEKLLHSENYV FLEQHYDRFFSEYEKLLHSENYVTKRQSLK R F F E K L 0 0 0 0 0 0 2 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 948.4229 Q9Y376 Q9Y376 210 216 CAB39 Calcium-binding protein 39 yes yes 2 0.038702 45.718 By MS/MS By matching 1 1 1.2732 1.0687 8.991 2 Median NaN NaN NaN 0 0 Median 1.3514 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1995 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349000 1022900 1326000 0 0 0 1819900 804560 1015300 0 0 0 529100 218350 310750 0 0 0 0 0 0 8859 4406 9205 43976;43977 43984 43984 1 FFSGYGR IGRLSYNVREKDIQRFFSGYGRLLEVDLKN VREKDIQRFFSGYGRLLEVDLKNGYGFVEF R F F G R L 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 1 0 0 1 0 0 0 7 0 832.38679 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 21 27 SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.011827 79.454 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 3 5 3 1.0997 1.0106 9.6111 16 Median 1.0984 1.0785 NaN 1 0 Median 1.2332 1.0399 13.698 3 0 Median 1.0119 0.99842 NaN 1 0 Median 1.1236 0.94782 7.2473 3 0 Median 1.022 1.0376 10.051 5 0 Median 1.1757 0.9803 5.7022 3 0 Plateau 65924000 31561000 34364000 5012500 2121900 2890600 9525100 4160800 5364300 11312000 5546900 5765400 16165000 8260100 7904600 20957000 10232000 10725000 2952500 1238800 1713700 8860 485 9206 43978;43979;43980;43981;43982;43983;43984;43985;43986;43987;43988;43989;43990;43991;43992;43993 43985;43986;43987;43988;43989;43990;43991;43992;43993 43990 9 FFSPLQK GTKILYQNTEALQSKFFSPLQKAMLPPNSF NTEALQSKFFSPLQKAMLPPNSFQGKVAFI K F F Q K A 0 0 0 0 0 1 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 7 0 865.46979 Q16698;E5RJG7;E5RFV2;E5RID6 Q16698 43 49 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.0065536 92.692 By MS/MS By matching 1 1 0.84951 0.79799 10.233 2 Median 0.92986 0.85787 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77609 0.74229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15165000 8433000 6732500 11764000 6278100 5485400 0 0 0 3401900 2154900 1247000 0 0 0 0 0 0 0 0 0 8861 2994 9207 43994;43995 43994;43995 43994 2 FFTEEVDSR DELNEINQFLGPVEKFFTEEVDSRKIDQEG LGPVEKFFTEEVDSRKIDQEGKIPDETLEK K F F S R K 0 1 0 1 0 0 2 0 0 0 0 0 0 2 0 1 1 0 0 1 0 0 9 0 1128.5088 Q9H845 Q9H845 77 85 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 2 0.00097308 87.639 By MS/MS By matching By matching By matching 1 2 1 1 1.1893 1.0545 18.021 5 Median 1.1063 1.0411 NaN 1 0 Median 1.4028 1.2288 21.629 2 0 Median 0.96203 0.9749 NaN 1 0 Median 1.6737 1.3973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55539000 25716000 29823000 37432000 16977000 20456000 8539000 3207600 5331400 8072300 4980900 3091400 1495500 550720 944770 0 0 0 0 0 0 8862 3988 9208 43996;43997;43998;43999;44000 43996 43996 1 FFTGQITAAGK AGYKAVVLAANHFGRFFTGQITAAGKVPPA HFGRFFTGQITAAGKVPPAKILIVGGGVAG R F F G K V 2 0 0 0 0 1 0 2 0 1 0 1 0 2 0 0 2 0 0 0 0 0 11 0 1139.5975 Q13423;E9PCX7;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 214 224 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.00013635 101.65 By MS/MS By MS/MS By matching 1 2 1 1.3398 1.1944 46.782 4 Median 0.82219 0.82525 NaN 1 0 Median 1.3398 1.1944 14.623 2 0 Median NaN NaN NaN 0 0 Median 2.8123 2.4747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94643000 40480000 54162000 32020000 16259000 15761000 62263000 24067000 38196000 0 0 0 359770 153790 205980 0 0 0 0 0 0 8863 2814 9209 44001;44002;44003;44004 43997;43998;43999;44000;44001;44002 43998 6 FFTPAIR LPCEVAVDGPAPVGRFFTPAIRQGPEGLEV DGPAPVGRFFTPAIRQGPEGLEVSFRGRCL R F F I R Q 1 1 0 0 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 7 0 850.47012 E9PN81;Q8TDP1 E9PN81 47 53 RNASEH2C Ribonuclease H2 subunit C yes no 2 0.0052745 97.596 By MS/MS By MS/MS By MS/MS 1 1 1 1.0383 0.96552 2.4039 3 Median 0.98947 0.96552 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0383 0.99673 NaN 1 0 Median 1.1483 0.95085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17211000 9160500 8050400 8327700 4495500 3832200 0 0 0 6638700 3588400 3050300 2244400 1076600 1167800 0 0 0 0 0 0 8864 972 9210 44005;44006;44007 44003;44004;44005;44006 44005 4 FFTPPASK SGNRGGRGAFHSQNRFFTPPASKGNYSRRE AFHSQNRFFTPPASKGNYSRREGTRGSSWS R F F S K G 1 0 0 0 0 0 0 0 0 0 0 1 0 2 2 1 1 0 0 0 0 0 8 0 893.4647 Q69YN4 Q69YN4 1706 1713 KIAA1429 Protein virilizer homolog yes yes 2 0.043946 60.76 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8865 3130 9211 44008 44007 44007 1 FFTQPDKNFSNTK TYSLESPKDPVLPARFFTQPDKNFSNTKNY ARFFTQPDKNFSNTKNYLPPEMKSFFTPGK R F F T K N 0 0 2 1 0 1 0 0 0 0 0 2 0 3 1 1 2 0 0 0 0 0 13 1 1572.7573 Q9NTI5;A9IYQ1 Q9NTI5 1097 1109 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2;3 0.00017949 89.827 By MS/MS By MS/MS By MS/MS 2 1 3 0.64697 0.74815 39.727 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75059 0.87349 20.565 2 0 Median 0.36754 0.34674 NaN 1 1 Median 0.63519 0.68756 11.943 2 0 Median NaN NaN NaN 0 0 Median 73652000 44428000 29224000 0 0 0 0 0 0 43458000 24983000 18475000 6320500 4844100 1476400 23874000 14601000 9273200 0 0 0 8866 4107 9212 44009;44010;44011;44012;44013;44014 44008;44009;44010;44011;44012;44013;44014;44015 44010 8 FFTSSTSLTLK GKSTVNCSTTPVAERFFTSSTSLTLKHAAW VAERFFTSSTSLTLKHAAWYPSEILDPHVV R F F L K H 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 3 3 0 0 0 0 0 11 0 1230.6496 Q99567;J3KMX1;I3L245 Q99567 164 174 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.0031605 73.985 By MS/MS 1 1.1149 1.1296 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1149 1.1296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11411000 5492700 5918200 0 0 0 0 0 0 11411000 5492700 5918200 0 0 0 0 0 0 0 0 0 8867 3753 9213 44015 44016 44016 1 FFTYGNFPLEQHLK LKQFHATHYHPSNARFFTYGNFPLEQHLKQ RFFTYGNFPLEQHLKQIHEEALSKFQKIEP R F F L K Q 0 0 1 0 0 1 1 1 1 0 2 1 0 3 1 0 1 0 1 0 0 0 14 0 1739.8671 Q5JRX3 Q5JRX3 265 278 PITRM1 Presequence protease, mitochondrial yes yes 3 0.027973 19.323 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.93733 1.0295 22.749 5 Median 0.83251 0.82387 13.23 2 0 Median NaN NaN NaN 0 0 Median 0.93733 1.0295 NaN 1 0 Median 1.2846 1.0779 NaN 1 0 Median 1.2522 1.3899 NaN 1 0 Median NaN NaN NaN 0 0 Median 21412000 11078000 10334000 11934000 6317900 5615600 0 0 0 6694600 3529800 3164800 1246500 529450 717070 1537000 700580 836420 0 0 0 8868 3050 9214 44016;44017;44018;44019;44020 44017;44018;44019 44017 3 FFVADTANEALEAAK QSKKLMSDNGVRVQRFFVADTANEALEAAK FFVADTANEALEAAKRLNAKEIVLKAQILA R F F A K R 5 0 1 1 0 0 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 15 0 1595.7831 Q96I99;E9PDQ8 Q96I99 59 73 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.00036772 63.624 By matching By MS/MS 1 1 0.29473 0.31235 167.51 2 Median 0.090246 0.095549 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96254 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13707000 10536000 3170400 8946100 8273100 673040 0 0 0 4760800 2263400 2497300 0 0 0 0 0 0 0 0 0 8869 3678 9215 44021;44022 44020;44021 44021 2 FFVADTANEALEAAKR QSKKLMSDNGVRVQRFFVADTANEALEAAK FVADTANEALEAAKRLNAKEIVLKAQILAG R F F K R L 5 1 1 1 0 0 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 16 1 1751.8842 Q96I99;E9PDQ8 Q96I99 59 74 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 3 3.1818E-05 60.918 By MS/MS By matching 1 1 1.288 1.2885 27.462 2 Median 0.99049 1.0611 NaN 1 0 Median 1.6748 1.5647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4432200 2197100 2235200 4203600 2092300 2111400 228610 104790 123830 0 0 0 0 0 0 0 0 0 0 0 0 8870 3678 9216 44023;44024 44022;44023 44022 2 FFVAPFPEVFGK HQGLPQEVLNENLLRFFVAPFPEVFGKEKV LLRFFVAPFPEVFGKEKVNELSKDIGSEST R F F G K E 1 0 0 0 0 0 1 1 0 0 0 1 0 4 2 0 0 0 0 2 0 0 12 0 1383.7227 CON__P02662 CON__P02662 23 34 yes yes 2 0.010069 56.729 By MS/MS By MS/MS By MS/MS 1 1 1 0.047266 0.045938 148.89 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.047266 0.045938 NaN 1 1 Median 0.0098244 0.0084041 NaN 1 1 Median 0.16963 0.16339 NaN 1 1 Median NaN NaN NaN 0 0 Median 5825400 5651100 174260 0 0 0 0 0 0 4187400 4100700 86721 451780 448540 3234.4 1186200 1101900 84303 0 0 0 + 8871 742 9217 44025;44026;44027 44024;44025;44026;44027 44026 4 FFVAVPGQVISPQSSSSGTDLTGDK AHAQLCFHGHRDAVKFFVAVPGQVISPQSS SPQSSSSGTDLTGDKAGPSAQEPGSQTPLK K F F D K A 1 0 0 2 0 2 0 3 0 1 1 1 0 2 2 5 2 0 0 3 0 0 25 0 2523.2493 A0A087X2D8;O60271 A0A087X2D8 1219 1243 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 6.8662E-10 59.429 By MS/MS 1 0.8742 0.87485 NaN 1 Median 0.8742 0.87485 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9198900 4778600 4420300 9198900 4778600 4420300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8872 134 9218 44028 44028 44028 1 FFVGGNWK DLQRLGSSAMAPSRKFFVGGNWKMNGRKQS AMAPSRKFFVGGNWKMNGRKQSLGELIGTL K F F W K M 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 0 1 0 1 0 0 8 0 953.47594 P60174 P60174 44 51 TPI1 Triosephosphate isomerase yes yes 2 0.0023286 114.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 5 2 1 1 1 1.1451 1.0379 14.432 15 Median 1.1102 1.0348 12.178 5 0 Median 1.1971 1.0126 6.2489 5 0 Median 1.0929 1.0318 5.0344 2 0 Median 1.2532 1.0379 NaN 1 0 Median 1.2833 1.306 NaN 1 0 Median 1.7734 1.4915 NaN 1 0 Median 735700000 333670000 402030000 575540000 262690000 312840000 74822000 32417000 42405000 73399000 33849000 39550000 2767000 1099700 1667300 8150800 3179500 4971300 1026600 429450 597140 8873 2523 9219 44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043 44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043;44044;44045 44029 17 FFVGPEDTEINPGNYR ______________________________ FVGPEDTEINPGNYRHFFHHADEDDEEEDD R F F Y R H 0 1 2 1 0 0 2 2 0 1 0 0 0 2 2 0 1 0 1 1 0 0 16 0 1853.8584 A0A087WZV0;O43314;D6RFG4 A0A087WZV0 7 22 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 yes no 2 9.2337E-10 116.23 By MS/MS 1 0.6879 0.75184 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6879 0.75184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2117100 1186900 930210 0 0 0 0 0 0 2117100 1186900 930210 0 0 0 0 0 0 0 0 0 8874 99 9220 44044 44046;44047 44046 2 FFVMTSLR LTATVLKQGSNQAIRFFVMTSLRNWYRGDN GSNQAIRFFVMTSLRNWYRGDNPNKPMNPL R F F L R N 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 P53007;B4DP62 P53007 199 206 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 2 0.0075282 67.032 By MS/MS By matching By matching By matching By MS/MS By matching 3 2 3 2 1 2 1.1319 1.069 39.009 13 Median 0.96803 0.90565 1.4806 3 0 Median 2.6298 2.2813 64.001 2 0 Median 0.89139 0.99664 11.963 3 0 Median 1.2209 1.0481 8.1402 2 0 Median 1.1468 1.1202 NaN 1 0 Median 1.8897 1.5415 1.3614 2 0 Median 50884000 22105000 28779000 36852000 17227000 19625000 8246900 2288500 5958500 3040200 1461900 1578400 542470 217060 325410 1279300 582900 696410 922870 327910 594960 8875 2464 9221;9222 44045;44046;44047;44048;44049;44050;44051;44052;44053;44054;44055;44056;44057 44048;44049;44050;44051;44052 44050 1153 5 FFVSSSQGR TDSEDKALMNGSESRFFVSSSQGRSELHIE NGSESRFFVSSSQGRSELHIENLNMEADPG R F F G R S 0 1 0 0 0 1 0 1 0 0 0 0 0 2 0 3 0 0 0 1 0 0 9 0 1013.493 P35613;A0A087WUV8;A0A087X2B5;I3L192;R4GMX5 P35613 274 282 BSG Basigin yes no 2 0.00060254 110.31 By MS/MS By MS/MS 1 3 1.0398 0.9463 28.199 4 Median 0.98544 0.9398 NaN 1 0 Median 1.2642 1.0618 33.691 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38875000 17872000 21002000 12280000 6247900 6032300 26594000 11624000 14970000 0 0 0 0 0 0 0 0 0 0 0 0 8876 2249 9223 44058;44059;44060;44061 44053;44054;44055;44056;44057;44058 44054 6 FFWGNAETLK MLFGSLARPGHPMGKFFWGNAETLKHEPRK HPMGKFFWGNAETLKHEPRKNNIDTHARLR K F F L K H 1 0 1 0 0 0 1 1 0 0 1 1 0 2 0 0 1 1 0 0 0 0 10 0 1211.5975 O43847;G3V1R5;F5H7V1 O43847 343 352 NRD1 Nardilysin yes no 2 0.042746 30.254 By MS/MS By matching 1 1 1.1379 1.0405 26.998 2 Median 0.8792 0.85965 NaN 1 0 Median 1.4727 1.2593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9473800 3673900 5799900 4583000 2061200 2521800 4890800 1612700 3278100 0 0 0 0 0 0 0 0 0 0 0 0 8877 1597 9224 44062;44063 44059 44059 1 FFYSDQNVDSR EQGVEEHETLLLRRKFFYSDQNVDSRDPVQ LRRKFFYSDQNVDSRDPVQLNLLYVQARDD K F F S R D 0 1 1 2 0 1 0 0 0 0 0 0 0 2 0 2 0 0 1 1 0 0 11 0 1376.5997 Q9Y490 Q9Y490 197 207 TLN1 Talin-1 no no 2 0.00013373 106.88 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1534 1.1009 22.554 5 Median 1.1534 1.1036 NaN 1 0 Median 1.2373 1.0252 10.073 2 2 Median 0.71854 0.72103 NaN 1 0 Median 1.5173 1.3207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20964000 9509000 11455000 4848900 1837600 3011300 9024800 3711000 5313800 5058800 3120900 1937800 2031300 839420 1191800 0 0 0 0 0 0 8878 4441 9225 44064;44065;44066;44067;44068 44060;44061;44062;44063 44060 4 FFYSDQNVDSRDPVQLNLLYVQAR EQGVEEHETLLLRRKFFYSDQNVDSRDPVQ SRDPVQLNLLYVQARDDILNGSHPVSFDKA K F F A R D 1 2 2 3 0 3 0 0 0 0 3 0 0 2 1 2 0 0 2 3 0 0 24 1 2886.4301 Q9Y490 Q9Y490 197 220 TLN1 Talin-1 no no 3 6.6551E-12 54.637 By matching By MS/MS 2 1 1.1961 1.121 47.039 3 Median NaN NaN NaN 0 0 Median 1.2615 1.2273 12.808 2 0 Median 0.50958 0.55173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4571500 2934800 1636700 0 0 0 1069800 549000 520820 3501700 2385800 1115900 0 0 0 0 0 0 0 0 0 8879 4441 9226 44069;44070;44071 44064 44064 1 FGALLSDQGFDLMNK KMTFSEHPYNNLRKRFGALLSDQGFDLMNK FGALLSDQGFDLMNKFLTYFPGRRISAEDG R F G N K F 1 0 1 2 0 1 0 2 0 0 3 1 1 2 0 1 0 0 0 0 0 0 15 0 1654.8025 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 639 653 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.030834 33.866 By MS/MS By matching By MS/MS 1 1 1 1.2583 1.2862 3.3199 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1547 1.272 NaN 1 1 Median 1.4212 1.2152 NaN 1 0 Median 1.2583 1.2962 NaN 1 0 Median NaN NaN NaN 0 0 Median 6284700 2806800 3477900 0 0 0 0 0 0 4022500 1762300 2260200 329750 152140 177600 1932500 892400 1040100 0 0 0 8880 259 9227 44072;44073;44074 44065;44066 44066 2 FGALTAEK ILQCHGELDPMVPVRFGALTAEKLRSVVTP DPMVPVRFGALTAEKLRSVVTPARVQFKTY R F G E K L 2 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 835.44397 O95372;Q5QPQ0 O95372 183 190 LYPLA2 Acyl-protein thioesterase 2 yes no 2 0.0059586 73.26 By MS/MS By MS/MS By MS/MS 2 1 1 1.0628 0.97912 5.1659 4 Median 1.0628 0.96511 1.343 2 0 Median 1.2583 1.0741 NaN 1 0 Median 1.0252 0.98395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10263000 4575900 5687000 6506500 2779100 3727400 1236100 577490 658560 2520400 1219300 1301100 0 0 0 0 0 0 0 0 0 8881 1767 9228 44075;44076;44077;44078 44067;44068;44069;44070;44071 44067 5 FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSAR SASASSSSSSFAQQRFGAMGGGGPSAAGGG TPTLNQLLTSPSSARGYQGYPGGDYSGGPQ R F G A R G 5 1 1 0 0 2 0 8 0 0 3 0 1 1 5 4 5 0 0 0 0 0 36 0 3311.6205 O14497 O14497 271 306 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 0.0032965 25.222 By MS/MS By MS/MS 1 1 0.44198 0.47092 17.413 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48984 0.53262 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.39879 0.41636 NaN 1 1 Median NaN NaN NaN 0 0 Median 2746000 2169000 577020 0 0 0 0 0 0 1585800 1258900 326820 0 0 0 1160300 910080 250210 0 0 0 8882 1480 9229 44079;44080 44072;44073 44072 2 FGANAILGVSLAVCK DKLMIEMDGTENKSKFGANAILGVSLAVCK FGANAILGVSLAVCKAGAVEKGVPLYRHIA K F G C K A 3 0 1 0 1 0 0 2 0 1 2 1 0 1 0 1 0 0 0 2 0 0 15 0 1518.8228 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;E5RI09;E5RG95;K7EPM1;K7EKN2;E5RGZ4;P09104 P06733 106 120 ENO1;ENO3;ENO2 Alpha-enolase;Enolase;Gamma-enolase no no 2 5.0464E-07 88.596 By MS/MS 5 1.1871 1.016 6.0557 4 Median NaN NaN NaN 0 0 Median 1.1871 1.016 6.0557 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17406000 7732400 9674100 0 0 0 17406000 7732400 9674100 0 0 0 0 0 0 0 0 0 0 0 0 8883 1873;1911 9230 44081;44082;44083;44084;44085 44074;44075;44076;44077;44078;44079 44076 6 FGAPPHAGGGIGLER GIDLEKIKAYIDSFRFGAPPHAGGGIGLER FGAPPHAGGGIGLERVTMLFLGLHNVRQTS R F G E R V 2 1 0 0 0 0 1 5 1 1 1 0 0 1 2 0 0 0 0 0 0 0 15 0 1434.7368 P14868;H7BZ35 P14868 461 475 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2;3 3.1175E-09 99.283 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 2 1 2 2 0.81922 0.75568 41.035 13 Median 0.85093 0.83175 41.201 6 1 Median 0.90305 0.74333 10.717 2 0 Median 0.7643 0.7637 NaN 1 0 Median 0.8498 0.72786 5.3044 2 0 Median 0.37044 0.39681 18.215 2 0 Median NaN NaN NaN 0 0 Median 136740000 72050000 64687000 73439000 37430000 36009000 27409000 13136000 14274000 12321000 6812200 5508800 16414000 9511700 6902700 7152900 5160300 1992700 0 0 0 8884 2012 9231 44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098 44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097 44082 18 FGAQQDTIEVPEK LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL NRFGAQQDTIEVPEKDLVDKARQINIHNLS R F G E K D 1 0 0 1 0 2 2 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 13 0 1460.7147 P49736;H0Y8E6 P49736 851 863 MCM2 DNA replication licensing factor MCM2 yes no 2 0.00039242 74.533 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.94123 0.89842 5.4579 3 Median 0.97416 0.94207 NaN 1 1 Median 0.94123 0.8449 NaN 1 0 Median 0.82288 0.89842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24040000 12334000 11706000 12618000 5951700 6666500 981780 283940 697840 10440000 6098100 4342000 0 0 0 0 0 0 0 0 0 8885 2393 9232 44099;44100;44101;44102 44098;44099;44100;44101 44100 4 FGAQQDTIEVPEKDLVDK LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL QQDTIEVPEKDLVDKARQINIHNLSAFYDS R F G D K A 1 0 0 3 0 2 2 1 0 1 1 2 0 1 1 0 1 0 0 2 0 0 18 1 2031.0161 P49736;H0Y8E6 P49736 851 868 MCM2 DNA replication licensing factor MCM2 yes no 3 3.8114E-12 94.845 By MS/MS By MS/MS By MS/MS 1 1 2 0.75839 0.82554 8.9215 4 Median 0.76658 0.79682 NaN 1 0 Median 0.9907 0.916 NaN 1 0 Median 0.69285 0.79821 9.7704 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109250000 62068000 47182000 43437000 25140000 18297000 17580000 8693100 8887100 48233000 28235000 19998000 0 0 0 0 0 0 0 0 0 8886 2393 9233 44103;44104;44105;44106 44102;44103;44104;44105;44106;44107 44106 6 FGAQQDTIEVPEKDLVDKAR LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL DTIEVPEKDLVDKARQINIHNLSAFYDSEL R F G A R Q 2 1 0 3 0 2 2 1 0 1 1 2 0 1 1 0 1 0 0 2 0 0 20 2 2258.1543 P49736;H0Y8E6 P49736 851 870 MCM2 DNA replication licensing factor MCM2 yes no 3;4 1.0685E-07 58.997 By MS/MS 2 0.72898 0.8286 17.49 2 Median 0.72898 0.8286 17.49 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19174000 11686000 7487900 19174000 11686000 7487900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8887 2393 9234 44107;44108 44108;44109 44108 2 FGATLEIVTDK ESMPLLEWFANNYKKFGATLEIVTDKSQEG NYKKFGATLEIVTDKSQEGSQFVKGFGGIG K F G D K S 1 0 0 1 0 0 1 1 0 1 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1192.634 B7Z7P8;P62495 B7Z7P8 371 381 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.006947 43.282 By MS/MS By matching By matching By MS/MS 1 2 1 1 1.0049 0.94439 16.035 5 Median 1.2251 1.1714 NaN 1 0 Median 1.0822 0.94173 24.21 2 0 Median 0.97304 0.94439 NaN 1 0 Median 1.0049 0.89613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15644000 7314700 8329000 3140200 1341700 1798500 1642000 806050 835940 9584600 4578600 5006000 1276900 588290 688560 0 0 0 0 0 0 8888 638 9235 44109;44110;44111;44112;44113 44110;44111 44111 2 FGATLEIVTDKSQEGSQFVK ESMPLLEWFANNYKKFGATLEIVTDKSQEG EIVTDKSQEGSQFVKGFGGIGGILRYRVDF K F G V K G 1 0 0 1 0 2 2 2 0 1 1 2 0 2 0 2 2 0 0 2 0 0 20 1 2183.111 B7Z7P8;P62495 B7Z7P8 371 390 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 3 1.3721E-07 58.123 By MS/MS By MS/MS By matching 1 1 1 1.2336 1.2323 9.299 3 Plateau 1.1973 1.1439 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.271 1.3274 NaN 1 0 Median 1.1779 1.1188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26061000 10898000 15163000 11139000 4762700 6376300 0 0 0 12364000 5109500 7254000 2558900 1026000 1532900 0 0 0 0 0 0 8889 638 9236 44114;44115;44116 44112;44113;44114;44115 44112 4 FGAVEGAVAK TEALASFDYIVREGKFGAVEGAVAKYMGAA VREGKFGAVEGAVAKYMGAAAMYLISKRLK K F G A K Y 3 0 0 0 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 0 947.50763 Q9H7Z7;A6NHH0;X6RJ95 Q9H7Z7 270 279 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes no 2 0.00039409 78.516 By MS/MS By MS/MS By MS/MS 1 1 1 1.4503 1.2182 11.665 3 Median 1.1686 1.0903 NaN 1 0 Median 1.4503 1.2182 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.622 1.3766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16103000 6869000 9234100 8221500 3983200 4238200 6565100 2461800 4103300 0 0 0 1316500 423980 892520 0 0 0 0 0 0 8890 3985 9237 44117;44118;44119 44116;44117;44118;44119;44120 44118 5 FGAVFLWDSGSSVGEITGHNK EDSKRIAVVGEGREKFGAVFLWDSGSSVGE WDSGSSVGEITGHNKVINSVDIKQSRPYRL K F G N K V 1 0 1 1 0 0 1 4 1 1 1 1 0 2 0 3 1 1 0 2 0 0 21 0 2207.0647 O75083;D6RD66 O75083 127 147 WDR1 WD repeat-containing protein 1 yes no 3 5.9681E-07 47.397 By MS/MS By MS/MS By matching 1 2 1 1.2239 1.1132 35.633 4 Median 1.0611 1.0169 NaN 1 1 Median 1.6562 1.4465 24.231 2 0 Median NaN NaN NaN 0 0 Median 0.81977 0.73102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6854500 2861200 3993300 4715400 2110800 2604600 2074100 712810 1361300 0 0 0 65033 37655 27378 0 0 0 0 0 0 8891 1643 9238 44120;44121;44122;44123 44121;44122 44122 2 FGAVWTGDNTAEWDHLK RPFVLARAFFAGSQRFGAVWTGDNTAEWDH AVWTGDNTAEWDHLKISIPMCLSLGLVGLS R F G L K I 2 0 1 2 0 0 1 2 1 0 1 1 0 1 0 0 2 2 0 1 0 0 17 0 1945.8959 E9PKU7;Q14697;F5H6X6 Q14697 611 627 GANAB Neutral alpha-glucosidase AB no no 2;3 6.8843E-08 93.51 By MS/MS By matching 6 2 1.0654 0.98226 19.029 8 Median 0.97672 0.93859 22.438 6 0 Median 1.1973 1.0396 1.6117 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96966000 45855000 51111000 82478000 39730000 42748000 14488000 6125000 8362700 0 0 0 0 0 0 0 0 0 0 0 0 8892 2896;951 9239 44124;44125;44126;44127;44128;44129;44130;44131 44123;44124;44125;44126 44124 4 FGAYIVDGLR GFSGGMKDMYDQVLKFGAYIVDGLRECCQP DQVLKFGAYIVDGLRECCQPVLVYIPPQAE K F G L R E 1 1 0 1 0 0 0 2 0 1 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1109.5869 Q13085;Q59FY4;O00763 Q13085 2063 2072 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.0043693 67.993 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.98715 1.0259 32.044 4 Median 0.66264 0.65328 NaN 1 1 Median 1.3889 1.1875 NaN 1 0 Median 1.2579 1.3373 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77468 0.8864 NaN 1 0 Median NaN NaN NaN 0 0 Median 11043000 5119500 5923800 2957800 1535900 1421900 5065700 2208300 2857400 1802200 830440 971770 0 0 0 1217600 544910 672650 0 0 0 8893 2784 9240 44132;44133;44134;44135 44127;44128 44127 2 FGDDYRPGLR RDPIERLVSYYYFLRFGDDYRPGLRRRKQG YYFLRFGDDYRPGLRRRKQGDKKTFDECVA R F G L R R 0 2 0 2 0 0 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 1 1194.5782 Q7LGA3 Q7LGA3 179 188 HS2ST1 Heparan sulfate 2-O-sulfotransferase 1 yes yes 3 0.060161 24.855 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1179900 0 1179900 0 0 0 0 0 0 1179900 0 1179900 0 0 0 0 0 0 0 0 0 8894 3232 9241 44136 44129 44129 1 FGDFVSDEVVAPVR EDLVIRLLCVFALDRFGDFVSDEVVAPVRE RFGDFVSDEVVAPVRETCAQTLGVVLKHMN R F G V R E 1 1 0 2 0 0 1 1 0 0 0 0 0 2 1 1 0 0 0 4 0 0 14 0 1535.762 A0A0A0MTH9;O14981 A0A0A0MTH9 355 368 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.00021536 77.379 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1381 1.0414 18.595 4 Median 1.4696 1.4766 NaN 1 1 Median 1.1449 1.0112 NaN 1 0 Median 0.97509 1.0726 NaN 1 0 Median 1.1313 0.99073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8154100 3803300 4350800 1426200 533580 892580 443720 178160 265570 5774800 2859200 2915600 509400 232380 277010 0 0 0 0 0 0 8895 191 9242 44137;44138;44139;44140 44130;44131;44132 44131 3 FGDLILK SELQLPFQACLKVEKFGDLILKATEPQMVL QACLKVEKFGDLILKATEPQMVLFNLYDDW K F G L K A 0 0 0 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 804.47454 Q6P2Q9 Q6P2Q9 1902 1908 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.015644 70.912 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 3 3 1.3449 1.1806 10.796 12 Median 1.3605 1.311 NaN 1 0 Median 1.3657 1.1951 NaN 1 0 Median 1.0362 1.14 12.388 2 0 Median 1.3751 1.2604 3.5632 2 0 Median 1.0579 1.107 17.958 3 0 Median 1.3578 1.149 7.7491 3 0 Median 34837000 15302000 19535000 3513800 1521500 1992400 2096700 930230 1166400 15406000 6527400 8878400 1269100 497180 771950 10758000 5119500 5638200 1794200 706160 1088100 8896 3157 9243 44141;44142;44143;44144;44145;44146;44147;44148;44149;44150;44151;44152 44133;44134;44135;44136;44137 44135 5 FGDPVVQSDMK PQNTVFDAKRLIGRKFGDPVVQSDMKHWPF IGRKFGDPVVQSDMKHWPFQVINDGDKPKV K F G M K H 0 0 0 2 0 1 0 1 0 0 0 1 1 1 1 1 0 0 0 2 0 0 11 0 1221.57 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 79 89 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.00014133 117.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 1 1.1501 1.0625 24.089 14 Median 1.3974 1.2764 5.6695 3 0 Median 1.1203 0.92359 6.8139 3 0 Median 1.132 1.1091 0.45155 2 0 Median 1.213 1.0212 20.196 3 0 Plateau 1.5309 1.508 33.147 2 0 Median 1.1022 0.9072 NaN 1 0 Median 909520000 409180000 500340000 362660000 157130000 205530000 266870000 123170000 143700000 182530000 85183000 97349000 65251000 28789000 36462000 29092000 13476000 15616000 3122800 1439000 1683800 8897 278 9244;9245 44153;44154;44155;44156;44157;44158;44159;44160;44161;44162;44163;44164;44165;44166 44138;44139;44140;44141;44142;44143;44144;44145;44146;44147;44148;44149;44150;44151;44152;44153;44154;44155;44156;44157 44149 135 20 FGDRFPAMSDAYDR GFSGQNPLRGPNDERFGDRFPAMSDAYDRT RFGDRFPAMSDAYDRTMRQRALSTWKQMGE R F G D R T 2 2 0 3 0 0 0 1 0 0 0 0 1 2 1 1 0 0 1 0 0 0 14 1 1646.7147 P00491;G3V5M2 P00491 155 168 PNP Purine nucleoside phosphorylase yes no 3 0.019922 23.138 By MS/MS By matching 1 2 1.0489 0.96072 20.021 3 Median 0.89239 0.96072 NaN 1 0 Median 1.2717 1.0763 26.751 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6198400 3291900 2906500 4212000 2411800 1800200 1986400 880140 1106300 0 0 0 0 0 0 0 0 0 0 0 0 8898 1821 9246 44167;44168;44169 44158 44158 1 FGDSNTVMR LYDAKRRQDSLESMKFGDSNTVMRFLNEQK SLESMKFGDSNTVMRFLNEQKNLHSEISGK K F G M R F 0 1 1 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1025.46 P15924 P15924 917 925 DSP Desmoplakin yes yes 2 0.00069962 103.74 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.93811 0.94176 18.759 5 Median 0.93811 0.94176 NaN 1 0 Median 0.90661 0.76211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81169 0.85025 NaN 1 0 Median 1.4054 1.1593 3.5077 2 0 Median 10596000 5355200 5241200 1311100 717800 593280 1843000 972290 870730 0 0 0 0 0 0 4448400 2431500 2016900 2993900 1233600 1760300 8899 2021 9247 44170;44171;44172;44173;44174 44159;44160;44161;44162 44161 4 FGEALKK WFQTECAQAYKAMNKFGEALKKCHEIERHF QAYKAMNKFGEALKKCHEIERHFIEITDDQ K F G K K C 1 0 0 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 0 0 0 0 7 1 791.45414 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 501 507 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.04247 53.554 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 801970 0 801970 0 0 0 801970 0 801970 0 0 0 0 0 0 0 0 0 0 0 0 8900 213 9248 44175 44163 44163 1 FGEEIAR NAEYHQSILAKQQKKFGEEIARLQHAAELI ILAKQQKKFGEEIARLQHAAELIKTVASRY K F G A R L 1 1 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 820.40792 Q8WUM4;F8WDK9 Q8WUM4 270 276 PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.031276 49.358 By MS/MS By matching 2 1 1.4011 1.2229 55.425 3 Median NaN NaN NaN 0 0 Median 1.2879 1.12 12.424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4793 2.8899 NaN 1 0 Median NaN NaN NaN 0 0 Median 11229000 3310300 7918500 0 0 0 4071500 1994700 2076800 0 0 0 0 0 0 7157300 1315600 5841700 0 0 0 8901 3493 9249 44176;44177;44178 44164;44165 44164 2 FGELVMTK IEQGSDAGYLCESQKFGELVMTKESKALMG YLCESQKFGELVMTKESKALMGLYHGQVLC K F G T K E 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 8 0 923.47864 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21 H0YFD6 327 334 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.008272 63.565 By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 2 1.1782 1.0623 29.239 7 Median 1.1782 1.0623 NaN 1 0 Median 1.1841 1.035 43.971 2 0 Median 1.2965 1.3106 NaN 1 0 Median 1.8934 1.6514 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0466 0.88845 15.47 2 0 Median 34933000 15539000 19394000 14751000 6827900 7923000 5418900 2191400 3227500 12020000 5285900 6733800 529400 190140 339260 0 0 0 2213600 1043500 1170100 8902 1180 9250 44179;44180;44181;44182;44183;44184;44185 44166;44167 44167 2 FGEMQLDFR PTLLNCLMYKMSYYRFGEMQLDFRTPPGFD KMSYYRFGEMQLDFRTPPGFDRTRNAEIGN R F G F R T 0 1 0 1 0 1 1 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 9 0 1141.5226 Q8TCJ2 Q8TCJ2 725 733 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1.2956 1.2825 9.4886 6 Median 1.2149 1.2023 9.5539 2 0 Median 1.3534 1.1506 NaN 1 0 Median 1.2471 1.3465 7.316 2 0 Median 1.6033 1.3885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35240000 14516000 20723000 12916000 5603400 7312800 3186700 1264100 1922600 18984000 7590300 11394000 152670 58397 94271 0 0 0 0 0 0 8903 3466 9251 44186;44187;44188;44189;44190;44191 44168;44169;44170;44171;44172;44173;44174 44168 7 FGEPVLAGFAR VAIEASNGASDYGNKFGEPVLAGFARSLGL YGNKFGEPVLAGFARSLGLQLPDGQRREWI K F G A R S 2 1 0 0 0 0 1 2 0 0 1 0 0 2 1 0 0 0 0 1 0 0 11 0 1162.6135 O15067 O15067 396 406 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.0018537 56.729 By MS/MS By matching 1 1 0.94199 0.85352 8.4848 2 Median 0.83569 0.80382 NaN 1 0 Median 1.0618 0.90629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7516500 3714200 3802300 4384900 2279400 2105500 3131600 1434700 1696800 0 0 0 0 0 0 0 0 0 0 0 0 8904 1518 9252 44192;44193 44175;44176 44176 2 FGESTTGFNFSFK ASPLASSPVRKNLFRFGESTTGFNFSFKSA FRFGESTTGFNFSFKSALSPSKSPAKLNQS R F G F K S 0 0 1 0 0 0 1 2 0 0 0 1 0 4 0 2 2 0 0 0 0 0 13 0 1467.667 P49792 P49792 2260 2272 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0031286 45.359 By MS/MS By MS/MS 1 2 1.029 1.1457 14.715 3 Median 0.93184 0.8966 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0494 1.1563 1.2976 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12348000 5759600 6588900 4122800 1904900 2217900 0 0 0 8225600 3854600 4371000 0 0 0 0 0 0 0 0 0 8905 2401 9253 44194;44195;44196 44177;44178;44179;44180 44177 4 FGEVISYQQLAALAGNPK SFTRQVLWKLLKVVKFGEVISYQQLAALAG VISYQQLAALAGNPKAARAVGGAMRGNPVP K F G P K A 3 0 1 0 0 2 1 2 0 1 2 1 0 1 1 1 0 0 1 1 0 0 18 0 1904.9996 B4DEE8;P16455 B4DEE8 139 156 MGMT Methylated-DNA--protein-cysteine methyltransferase yes no 2 7.291E-05 48.741 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0249 0.91114 23.567 4 Median 0.82286 0.77354 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72122 0.68698 NaN 1 0 Median 1.3333 1.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2765 1.0732 NaN 1 0 Median 6000700 3099000 2901600 3150900 1747500 1403400 0 0 0 1231500 659920 571600 776890 323530 453350 0 0 0 841350 368110 473240 8906 589 9254 44197;44198;44199;44200 44181;44182;44183 44182 3 FGEVVDCTIKTDPVTGR SWDTSKKDLTEYLSRFGEVVDCTIKTDPVT EVVDCTIKTDPVTGRSRGFGFVLFKDAASV R F G G R S 0 1 0 2 1 0 1 2 0 1 0 1 0 1 1 0 3 0 0 3 0 0 17 1 1892.9302 A0A087WUK2;O14979 A0A087WUK2 171 187 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 3 0.0074823 24.793 By MS/MS 1 0.81984 0.89051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81984 0.89051 NaN 1 0 Median NaN NaN NaN 0 0 Median 6770000 3239000 3531000 0 0 0 0 0 0 0 0 0 0 0 0 6770000 3239000 3531000 0 0 0 8907 32 9255 44201 44184;44185 44185 2 FGEVVDCTLK SWDTTKKDLKDYFSKFGEVVDCTLKLDPIT DYFSKFGEVVDCTLKLDPITGRSRGFGFVL K F G L K L 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 1 0 0 2 0 0 10 0 1166.5642 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RD83;D6RBQ9 Q14103 120 129 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 2 0.00037716 80.688 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 4 2 1.1534 1.0649 12.02 17 Median NaN NaN NaN 0 0 Median 1.3097 1.109 9.1803 4 0 Median 1.0453 0.99922 13.305 5 0 Median 1.2394 1.0499 16.861 2 0 Median 1.0488 1.0273 8.1036 4 1 Median 1.472 1.2176 20.157 2 0 Median 191500000 90860000 100640000 0 0 0 22172000 9767000 12405000 35364000 16362000 19003000 7031100 2947100 4084000 120380000 59059000 61323000 6550700 2725400 3825300 8908 2854;816 9256 44202;44203;44204;44205;44206;44207;44208;44209;44210;44211;44212;44213;44214;44215;44216;44217;44218 44186;44187;44188;44189;44190;44191;44192;44193;44194;44195;44196;44197;44198;44199 44191 14 FGEVVDCTLKLDPITGR SWDTTKKDLKDYFSKFGEVVDCTLKLDPIT EVVDCTLKLDPITGRSRGFGFVLFKESESV K F G G R S 0 1 0 2 1 0 1 2 0 1 2 1 0 1 1 0 2 0 0 2 0 0 17 1 1918.9822 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RD83;D6RBQ9 Q14103 120 136 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 3 0.0010823 33.624 By MS/MS 3 0.87103 0.89216 29.818 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87103 0.89216 29.818 3 0 Median NaN NaN NaN 0 0 Median 12242000 6459600 5782400 0 0 0 0 0 0 0 0 0 0 0 0 12242000 6459600 5782400 0 0 0 8909 2854;816 9257 44219;44220;44221 44200;44201 44200 2 FGEYHKDDPSSFR VLRWLDRQLIRLCQKFGEYHKDDPSSFRFS QKFGEYHKDDPSSFRFSETFSLYPQFMFHL K F G F R F 0 1 0 2 0 0 1 1 1 0 0 1 0 2 1 2 0 0 1 0 0 0 13 1 1583.7005 F5H365;Q15436 F5H365 528 540 SEC23A Protein transport protein Sec23A yes no 3;4 0.02416 33.685 By MS/MS 2 1.0373 1.0633 NaN 1 Median 1.0373 1.0633 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4912700 1789900 3122800 4912700 1789900 3122800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8910 1029 9258 44222;44223 44202;44203 44202 2 FGEYNSNMSPEEK EYKERDKSNVFRDKRFGEYNSNMSPEEKMM KRFGEYNSNMSPEEKMMKRFALEQQRHHEK R F G E K M 0 0 2 0 0 0 3 1 0 0 0 1 1 1 1 2 0 0 1 0 0 0 13 0 1530.6297 P78316;E9PFK5 P78316 88 100 NOP14 Nucleolar protein 14 yes no 2 0.00067675 79.974 By MS/MS 1 0.95221 0.9839 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95221 0.9839 NaN 1 1 Median NaN NaN NaN 0 0 Median 2699600 1254600 1445000 0 0 0 0 0 0 0 0 0 0 0 0 2699600 1254600 1445000 0 0 0 8911 2637 9259 44224 44204 44204 1 FGFAESIANQR KALENDQKVRKEGGKFGFAESIANQRITAF EGGKFGFAESIANQRITAFKMEKAPIDTSD K F G Q R I 2 1 1 0 0 1 1 1 0 1 0 0 0 2 0 1 0 0 0 0 0 0 11 0 1238.6044 D6RIY6;Q06265 D6RIY6 266 276 EXOSC9 Exosome complex component RRP45 yes no 2 1.171E-09 172.21 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1.3477 1.1414 18.57 4 Median 1.587 1.5164 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0428 1.025 NaN 1 0 Median 1.3477 1.1414 13.767 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72916000 34882000 38035000 9091500 3835100 5256500 0 0 0 59739000 29232000 30507000 4085300 1814200 2271100 0 0 0 0 0 0 8912 828 9260 44225;44226;44227;44228;44229;44230 44205;44206;44207;44208;44209;44210;44211;44212 44207 8 FGFAIGSQTTK EEAADLPTKPTKISKFGFAIGSQTTKKASA KISKFGFAIGSQTTKKASAISIKLGSSKPK K F G T K K 1 0 0 0 0 1 0 2 0 1 0 1 0 2 0 1 2 0 0 0 0 0 11 0 1155.5924 Q8WW12 Q8WW12 71 81 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2 0.00018754 109.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.2203 1.2874 22.059 5 Linear 1.3284 1.2297 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91731 0.89306 35.038 2 0 Median 1.2712 1.0528 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1539 0.97081 NaN 1 0 Median 52790000 22880000 29909000 26110000 10873000 15236000 0 0 0 22799000 10286000 12513000 2631300 1150300 1480900 0 0 0 1249200 570210 679000 8913 3505 9261 44231;44232;44233;44234;44235;44236 44213;44214;44215;44216;44217;44218 44214 6 FGFAIGSQTTKK EEAADLPTKPTKISKFGFAIGSQTTKKASA ISKFGFAIGSQTTKKASAISIKLGSSKPKE K F G K K A 1 0 0 0 0 1 0 2 0 1 0 2 0 2 0 1 2 0 0 0 0 0 12 1 1283.6874 Q8WW12 Q8WW12 71 82 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2;3 0.0037226 65.347 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1.428 1.3534 15.17 6 Median 1.0408 1.0589 NaN 1 0 Median 1.5793 1.4431 NaN 1 0 Median 1.2666 1.2651 18.251 2 1 Median 1.552 1.396 13.098 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22102000 8594900 13507000 6541200 3349600 3191600 5808400 1473400 4335000 7723500 3072600 4651000 2028700 699340 1329400 0 0 0 0 0 0 8914 3505 9262 44237;44238;44239;44240;44241;44242 44219;44220;44221;44222 44220 3 FGFEENKIDR WTDNIFAIKSWAKRKFGFEENKIDRTFGIP WAKRKFGFEENKIDRTFGIPEDFDYID___ K F G D R T 0 1 1 1 0 0 2 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 10 1 1253.6041 Q9BWT6 Q9BWT6 184 193 MND1 Meiotic nuclear division protein 1 homolog yes yes 3 0.0098688 33.875 By MS/MS 1 1.1071 1.1345 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1071 1.1345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1293100 501870 791210 0 0 0 0 0 0 1293100 501870 791210 0 0 0 0 0 0 0 0 0 8915 3875 9263 44243 44223 44223 1 FGFEIIETKK HVQISNESAIDFYRKFGFEIIETKKNYYKR DFYRKFGFEIIETKKNYYKRIEPADAHVLQ K F G K K N 0 0 0 0 0 0 2 1 0 2 0 2 0 2 0 0 1 0 0 0 0 0 10 1 1210.6598 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5 C9J5D1 87 96 NAA50 N-alpha-acetyltransferase 50 yes no 2;3 0.011216 46.462 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.3279 1.2721 13.379 7 Median 1.4296 1.4315 13.065 3 2 Median 1.7277 1.537 NaN 1 0 Median 1.1568 1.1745 11.29 2 0 Median 1.3279 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19550000 8642900 10908000 16325000 7190300 9135000 161720 55184 106540 2963800 1352800 1611000 99657 44649 55008 0 0 0 0 0 0 8916 677 9264 44244;44245;44246;44247;44248;44249;44250 44224;44225;44226;44227 44227 4 FGFGFGGTGK GWSTMQASLDLGTDKFGFGFGGTGKKSHNK LGTDKFGFGFGGTGKKSHNKQFDNYGEEFT K F G G K K 0 0 0 0 0 0 0 5 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 973.46577 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 82 91 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00048844 76.827 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 1.3626 1.1812 8.0531 5 Median 1.0946 1.0252 NaN 1 0 Median 1.2221 1.0836 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3626 1.1812 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4232 1.2226 3.3614 2 0 Median 10635000 4557800 6077200 5364900 2373000 2991900 1748300 734860 1013400 0 0 0 3297500 1373300 1924100 0 0 0 224390 76552 147830 8917 135 9265 44251;44252;44253;44254;44255;44256 44228;44229 44228 2 FGFPAFSGISR KGSLLFTAGPLEEERFGFPAFSGISRLTWL EEERFGFPAFSGISRLTWLVSLFGELSLVS R F G S R L 1 1 0 0 0 0 0 2 0 1 0 0 0 3 1 2 0 0 0 0 0 0 11 0 1184.5978 P53004 P53004 162 172 BLVRA Biliverdin reductase A yes yes 2 0.00076197 63.076 By MS/MS By matching By matching By matching 2 1 1 1 0.8884 0.86721 8.2079 5 Median 0.88127 0.84927 2.9577 2 0 Median 1.143 0.96543 NaN 1 0 Median 0.81077 0.77449 NaN 1 0 Median 1.0624 0.89446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23647000 12259000 11387000 20823000 10869000 9953400 1658700 780000 878680 1050300 555140 495170 115230 55012 60218 0 0 0 0 0 0 8918 2463 9266 44257;44258;44259;44260;44261 44230;44231;44232;44233;44234 44234 5 FGFPEGSVELYAEK KGRRIRELTAVVQKRFGFPEGSVELYAEKV RFGFPEGSVELYAEKVATRGLCAIAQAESL R F G E K V 1 0 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 14 0 1571.7508 P23396;E9PPU1;F2Z2S8;H0YCJ7;H0YF32 P23396 77 90 RPS3 40S ribosomal protein S3 yes no 2 0.00013919 82.171 By MS/MS 1 1.2311 1.1843 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2311 1.1843 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9364700 3866600 5498100 0 0 0 0 0 0 9364700 3866600 5498100 0 0 0 0 0 0 0 0 0 8919 2112 9267 44262 44235 44235 1 FGFVDAQKEDMPPEHVR KWQQLQAKRYAEKRKFGFVDAQKEDMPPEH FVDAQKEDMPPEHVRKIIRDHGDMTNRKFR K F G V R K 1 1 0 2 0 1 2 1 1 0 0 1 1 2 2 0 0 0 0 2 0 0 17 1 2000.9414 Q6P2Q9;I3L0J9 Q6P2Q9 51 67 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 4 5.9642E-06 76.391 By matching By MS/MS By matching 1 2 2 0.75209 0.776 5.9099 5 Median NaN NaN NaN 0 0 Median 0.75209 0.72185 NaN 1 0 Median 0.67027 0.80355 4.9334 2 0 Median 0.80327 0.77547 6.2229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22340000 13047000 9293400 0 0 0 1032000 499780 532210 18955000 11317000 7638000 2353100 1229900 1123200 0 0 0 0 0 0 8920 3157 9268;9269 44263;44264;44265;44266;44267 44236;44237 44237 1671 2 FGFYEVFK WAPTFLGYSMQGLCKFGFYEVFKVLYSNML SMQGLCKFGFYEVFKVLYSNMLGEENTYLW K F G F K V 0 0 0 0 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 1 0 0 8 0 1035.5066 Q00325;F8VVM2;F8VZL5;F8VWR4;F8VWQ0 Q00325 138 145 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.016506 49.358 By MS/MS By matching By matching By matching By matching 4 5 3 1 1 1.4262 1.3646 26.597 14 Median 1.0291 1.0149 20.508 4 0 Median 1.729 1.5067 4.4824 5 0 Median 1.1509 1.1212 25.781 3 0 Plateau NaN NaN NaN 0 0 Median 1.6255 1.6692 NaN 1 0 Median 1.8761 1.5634 NaN 1 0 Median 23558000 10128000 13430000 12339000 6073600 6265500 6902300 2401300 4501000 2977000 1167200 1809800 0 0 0 950790 355770 595030 389110 130260 258850 8921 2674 9270 44268;44269;44270;44271;44272;44273;44274;44275;44276;44277;44278;44279;44280;44281 44238 44238 1 FGGALDAAAK LVSSLTSGLLTIGDRFGGALDAAAKMFSKA TIGDRFGGALDAAAKMFSKAFDSGIIPMEF R F G A K M 4 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 10 0 919.47633 P53396 P53396 935 944 ACLY ATP-citrate synthase yes yes 2 0.00036818 87.476 By MS/MS By MS/MS 1 1 1.2224 1.1006 8.1726 2 Median 1.2052 1.1661 NaN 1 0 Median 1.2398 1.0388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70581000 29515000 41067000 11686000 5115000 6571500 58895000 24400000 34495000 0 0 0 0 0 0 0 0 0 0 0 0 8922 2467 9271 44282;44283 44239;44240;44241;44242 44240 4 FGGDFLVYPGDPLR RDLWERGFFLSAAGKFGGDFLVYPGDPLRF KFGGDFLVYPGDPLRFHAHYIAQCW_____ K F G L R F 0 1 0 2 0 0 0 3 0 0 2 0 0 2 2 0 0 0 1 1 0 0 14 0 1551.7722 A0A590UJ73;A0A590UJW4;E7EQB3;Q9BSV6 A0A590UJ73 233 246 TSEN34 tRNA-splicing endonuclease subunit Sen34 yes no 2 0.0026176 42.001 By MS/MS By MS/MS By matching 1 1 1 0.811 0.77576 21.798 3 Median 0.79926 0.77576 NaN 1 0 Median 0.811 0.69384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0162 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median 2914300 1705600 1208700 1503700 947850 555880 626040 385640 240400 0 0 0 0 0 0 784510 372110 412400 0 0 0 8923 482 9272 44284;44285;44286 44243;44244;44245 44243 3 FGGEHVPNSPFQVTALAGDQPSVQPPLR FYTAPQPGKYVICVRFGGEHVPNSPFQVTA TALAGDQPSVQPPLRSQQLAPQYTYAQGGQ R F G L R S 2 1 1 1 0 3 1 3 1 0 2 0 0 2 5 2 1 0 0 3 0 0 28 0 2944.4832 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1726 1753 FLNA Filamin-A no no 3;4 6.5988E-67 172.74 By MS/MS By MS/MS By matching By matching By matching 5 2 1 1 1 0.50963 0.47853 91.971 10 Median 0.50912 0.49054 5.348 5 2 Median 0.66437 0.58985 68.925 2 0 Median 0.026098 0.034479 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84152 0.87983 NaN 1 0 Median 0.55009 0.46682 NaN 1 0 Median 246590000 169180000 77417000 202340000 132470000 69869000 19164000 12985000 6179100 23367000 22719000 648010 0 0 0 1596600 932830 663770 125470 68684 56789 8924 2088;3120 9273 44287;44288;44289;44290;44291;44292;44293;44294;44295;44296 44246;44247;44248;44249;44250;44251;44252;44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263 44249 18 FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ R F G V K V 0 0 2 0 0 2 1 17 1 1 4 1 0 3 5 2 0 0 1 4 0 0 44 0 4091.0653 CON__P35908;CON__P35908v2;P35908 CON__P35908 129 172 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 4 0.026211 16.344 By MS/MS 2 0.062319 0.064108 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.062319 0.064108 NaN 1 1 Median NaN NaN NaN 0 0 Median 16572000 16552000 20073 0 0 0 0 0 0 0 0 0 0 0 0 16572000 16552000 20073 0 0 0 + 8925 764;765 9274 44297;44298 44264;44265 44265 2 FGGGNPELLTQMVSK AKHVAEDLGKVFGERFGGGNPELLTQMVSK FGGGNPELLTQMVSKGFLGRKSGKGFYIYQ R F G S K G 0 0 1 0 0 1 1 3 0 0 2 1 1 1 1 1 1 0 0 1 0 0 15 0 1576.7919 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 611 625 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00029316 68.44 By MS/MS By MS/MS By matching By matching 2 1 2 1 0.9575 0.8686 16.469 6 Median 1.003 0.90436 20.123 2 0 Median NaN NaN NaN 0 0 Median 0.86474 0.85208 NaN 1 0 Median 1.0889 0.95722 11.023 2 0 Median 0.68594 0.67922 NaN 1 0 Median NaN NaN NaN 0 0 Median 110870000 55718000 55151000 55430000 28081000 27349000 0 0 0 47663000 23783000 23880000 5275600 2413200 2862500 2500200 1441000 1059200 0 0 0 8926 1180 9275 44299;44300;44301;44302;44303;44304 44266;44267;44268;44269 44267 4 FGGLAAGEDNGQR KVLQHEKQVYDIAAKFGGLAAGEDNGQRGY AKFGGLAAGEDNGQRGYLLTYVIAYIRDLA K F G Q R G 2 1 1 1 0 1 1 4 0 0 1 0 0 1 0 0 0 0 0 0 0 0 13 0 1290.5953 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 491 503 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 4.1866E-05 90.108 By MS/MS By MS/MS 1 1 0.88009 0.83891 2.2206 2 Median NaN NaN NaN 0 0 Median 0.95428 0.82584 NaN 1 0 Median 0.81168 0.85219 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11118000 5568300 5549700 0 0 0 6357900 2977100 3380800 4760000 2591200 2168800 0 0 0 0 0 0 0 0 0 8927 1439 9276 44305;44306 44270;44271;44272 44272 3 FGGNPGGFGNQGGFGNSR EPKHNSNRQLERSGRFGGNPGGFGNQGGFG NPGGFGNQGGFGNSRGGGAGLGNNQGSNMG R F G S R G 0 1 3 0 0 1 0 8 0 0 0 0 0 3 1 1 0 0 0 0 0 0 18 0 1725.7608 Q13148;A0A087WX29 Q13148 276 293 TARDBP TAR DNA-binding protein 43 yes no 2;3 3.1952E-108 266.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 5 4 6 6 0.96456 0.86677 15.508 28 Median 0.89351 0.86877 20.624 4 3 Median 1.272 1.0851 14.609 3 0 Median 0.82926 0.82647 19.673 5 2 Median 1.0744 0.89257 4.6439 4 0 Median 0.79131 0.79497 15.9 6 0 Median 1.0595 0.86677 8.6809 6 0 Median 881980000 459450000 422530000 47661000 24836000 22825000 3441700 1678400 1763300 480900000 253340000 227560000 132550000 62625000 69921000 204420000 110670000 93750000 13015000 6302100 6712700 8928 2789 9277 44307;44308;44309;44310;44311;44312;44313;44314;44315;44316;44317;44318;44319;44320;44321;44322;44323;44324;44325;44326;44327;44328;44329;44330;44331;44332;44333;44334 44273;44274;44275;44276;44277;44278;44279;44280;44281;44282;44283;44284;44285;44286;44287;44288;44289;44290;44291;44292;44293;44294;44295;44296;44297;44298;44299;44300;44301;44302;44303;44304;44305;44306;44307;44308;44309;44310;44311;44312 44279 40 FGGPVHHQAQR NVALLSQLYHSPARRFGGPVHHQAQRFRFS PARRFGGPVHHQAQRFRFSPMGVDHMSGLS R F G Q R F 1 1 0 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 11 0 1232.6163 Q15717 Q15717 207 217 ELAVL1 ELAV-like protein 1 yes yes 3 0.00073744 51.927 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.0029 0.93538 7.0485 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90601 0.87087 NaN 1 0 Median 1.0186 0.85471 NaN 1 0 Median 0.99608 0.97986 3.2184 3 0 Median 1.0545 0.91041 NaN 1 0 Median 5336300 2747500 2588800 0 0 0 0 0 0 813940 400250 413690 630520 298600 331920 3117700 1679300 1438400 774190 369350 404850 8929 2964 9278 44335;44336;44337;44338;44339;44340 44313;44314;44315;44316;44317;44318;44319;44320 44315 8 FGGSGSQVDSAR KVPDDIYKTHLENNRFGGSGSQVDSARMNL NNRFGGSGSQVDSARMNLASSFVNGFVNAA R F G A R M 1 1 0 1 0 1 0 3 0 0 0 0 0 1 0 3 0 0 0 1 0 0 12 0 1166.5316 Q13200 Q13200 358 369 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 3.4837E-18 179.8 By MS/MS By MS/MS 1 2 1.1817 1.0957 10.177 2 Median 1.1834 1.1775 NaN 1 0 Median 1.18 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9128000 5497000 3631000 1683200 755820 927350 7444900 4741200 2703700 0 0 0 0 0 0 0 0 0 0 0 0 8930 2796 9279 44341;44342;44343 44321;44322;44323 44323 3 FGGSYIVQGLK EKKTRALQRGNRHSRFGGSYIVQGLKSIGE RHSRFGGSYIVQGLKSIGERDLIFHKGLHN R F G L K S 0 0 0 0 0 1 0 3 0 1 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1167.6288 Q9UNS1 Q9UNS1 278 288 TIMELESS Protein timeless homolog yes yes 2 0.00017207 79.474 By matching By MS/MS 1 1 0.83793 0.81569 16.911 2 Median NaN NaN NaN 0 0 Median 1.0489 0.9193 NaN 1 0 Median 0.66941 0.72376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7099300 3979800 3119500 0 0 0 1517800 758370 759460 5581500 3221500 2360000 0 0 0 0 0 0 0 0 0 8931 4349 9280 44344;44345 44324 44324 1 FGGVQELLNQQK DCRMGAGIAVLFKKKFGGVQELLNQQKKSG KKKFGGVQELLNQQKKSGEVAVLKRDGRYI K F G Q K K 0 0 1 0 0 3 1 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1359.7147 C9JNE2;Q9Y530;C9J5P1;C9JXC3;H7C5Q1 C9JNE2 52 63 OARD1 O-acetyl-ADP-ribose deacetylase 1 yes no 2 7.2178E-10 178.3 By MS/MS By matching By MS/MS 1 2 1 0.91486 0.86764 43.168 4 Median 0.82074 0.77559 NaN 1 0 Median 0.95383 0.79725 72.575 2 0 Median 1.0198 0.97062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33396000 16453000 16942000 8024100 4387700 3636300 1493400 587870 905480 23878000 11478000 12400000 0 0 0 0 0 0 0 0 0 8932 711 9281 44346;44347;44348;44349 44325;44326;44327 44327 3 FGGVVELR IPMAYVPVSRAVSQKFGGVVELRMAVNKAG SRAVSQKFGGVVELRMAVNKAGPVVTDNGN K F G L R M 0 1 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 2 0 0 8 0 875.4865 P49247 P49247 233 240 RPIA Ribose-5-phosphate isomerase yes yes 2 0.0040608 83.753 By MS/MS By MS/MS 1 1 1.0007 0.83631 24.479 2 Median NaN NaN NaN 0 0 Median 1.1876 0.99435 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84326 0.70339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8464900 4209100 4255800 0 0 0 3065300 1290700 1774600 0 0 0 5399600 2918400 2481200 0 0 0 0 0 0 8933 2374 9282 44350;44351 44328;44329 44329 2 FGHEFLEFEFRPDGK ASDFYLRYYVGHKGKFGHEFLEFEFRPDGK FGHEFLEFEFRPDGKLRYANNSNYKNDVMI K F G G K L 0 1 0 1 0 0 3 2 1 0 1 1 0 4 1 0 0 0 0 0 0 0 15 1 1853.8737 P61326;Q96A72;F5H6N1 Q96A72 19 33 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 4 0.00044099 39.005 By MS/MS By matching 1 1 1.0948 1.0392 4.7173 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89234 1.0051 NaN 1 0 Median 1.3433 1.0745 NaN 1 0 Median 4414700 2163200 2251400 0 0 0 0 0 0 0 0 0 0 0 0 3699500 1859400 1840100 715130 303850 411290 8934 2556;3596 9283 44352;44353 44330;44331 44331 2 FGHLGLAINLITYDDRFNLK KLAETYLHRIGRSGRFGHLGLAINLITYDD LAINLITYDDRFNLKSIEEQLGTEIKPIPS R F G L K S 1 1 2 2 0 0 0 2 1 2 4 1 0 2 0 0 1 0 1 0 0 0 20 1 2319.2376 P26196 P26196 428 447 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 9.0784E-09 63.337 By MS/MS 1 1.1979 1.0946 NaN 1 Median NaN NaN NaN 0 0 Median 1.1979 1.0946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1983000 873410 1109600 0 0 0 1983000 873410 1109600 0 0 0 0 0 0 0 0 0 0 0 0 8935 2140 9284 44354 44332;44333 44333 2 FGHVDQENSPSFMFQGSSNTEFK SEKASKFGNTEQGFKFGHVDQENSPSFMFQ SPSFMFQGSSNTEFKSTKEGFSIPVSADGF K F G F K S 0 0 2 1 0 2 2 2 1 0 0 1 1 4 1 4 1 0 0 1 0 0 23 0 2619.1336 P49792 P49792 1861 1883 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 1.5379E-23 100.64 By MS/MS By matching By MS/MS 2 2 3 0.90163 0.90935 6.0283 7 Median 0.92321 0.90228 1.1037 2 0 Median 0.98711 0.86233 10.988 2 0 Median 0.84585 0.93144 3.7886 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50533000 25481000 25052000 10200000 5168200 5031600 1590000 735120 854910 38743000 19578000 19166000 0 0 0 0 0 0 0 0 0 8936 2401 9285;9286 44355;44356;44357;44358;44359;44360;44361 44334;44335;44336;44337;44338;44339 44337 1111 6 FGHYQQAELALQEAIR SLRYAALNLAALHCRFGHYQQAELALQEAI GHYQQAELALQEAIRIAQESNDHVCLQHCL R F G I R I 3 1 0 0 0 3 2 1 1 1 2 0 0 1 0 0 0 0 1 0 0 0 16 0 1872.9482 F5H0F9;Q9UJX4;H0YFB5 F5H0F9 314 329 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 3.582E-06 70.529 By MS/MS 2 0.90011 0.92026 2.4218 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90011 0.92026 2.4218 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15947000 7840200 8106600 0 0 0 0 0 0 15947000 7840200 8106600 0 0 0 0 0 0 0 0 0 8937 1019 9287 44362;44363 44340;44341 44341 2 FGIDDQDYLVSLTR FKEYCPQVFRNLRDRFGIDDQDYLVSLTRN RFGIDDQDYLVSLTRNPPSESEGSDGRFLI R F G T R N 0 1 0 3 0 1 0 1 0 1 2 0 0 1 0 1 1 0 1 1 0 0 14 0 1640.8046 Q8TBX8;F8VNT5;F8VU68 Q8TBX8 115 128 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes no 2 0.00016414 79.693 By matching By MS/MS By matching By matching 1 1 1 1 1.1647 1.1167 7.3852 4 Median NaN NaN NaN 0 0 Median 0.95649 0.99404 NaN 1 0 Median 1.1023 1.105 NaN 1 0 Median 1.3483 1.1841 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2306 1.1286 NaN 1 0 Median 8822100 3962800 4859300 0 0 0 3056100 1231600 1824600 5576700 2653100 2923600 102220 42411 59807 0 0 0 87019 35782 51238 8938 3462 9288 44364;44365;44366;44367 44342 44342 1 FGIDDQDYQNSVTR FKEYCPMVFRNLRERFGIDDQDYQNSVTRS RFGIDDQDYQNSVTRSAPINSDSQGRCGTR R F G T R S 0 1 1 3 0 2 0 1 0 1 0 0 0 1 0 1 1 0 1 1 0 0 14 0 1656.738 P78356;A0A087WT35 P78356 110 123 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta yes no 2 1.1328E-05 152.07 By MS/MS By matching 1 1 1.1955 1.1136 23.573 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9459 0.9426 NaN 1 0 Median 1.5109 1.3156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8497600 4188400 4309200 0 0 0 0 0 0 6758500 3511500 3247000 1739100 676890 1062200 0 0 0 0 0 0 8939 2643 9289 44368;44369 44343;44344 44343 2 FGIEIIK KMSFDIIDKSDVFSRFGIEIIKWAGFHTIK DKSDVFSRFGIEIIKWAGFHTIKDDIKFSQ R F G I K W 0 0 0 0 0 0 1 1 0 3 0 1 0 1 0 0 0 0 0 0 0 0 7 0 818.49019 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 342 348 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.027697 51.572 By MS/MS 1 0.98104 1.0401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98104 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1956800 1021800 934960 0 0 0 0 0 0 0 0 0 0 0 0 1956800 1021800 934960 0 0 0 8940 1437 9290 44370 44345 44345 1 FGIGDGNLQYYLYNWK ALDLMENKTFLEKLKFGIGDGNLQYYLYNW GIGDGNLQYYLYNWKCPSMGAEKVGLVLQ_ K F G W K C 0 0 2 1 0 1 0 3 0 1 2 1 0 1 0 0 0 1 3 0 0 0 16 0 1949.9312 P30419 P30419 467 482 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 0.047594 33.961 By MS/MS 1 1.0951 1.0484 NaN 1 Median 1.0951 1.0484 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4970400 2563700 2406800 4970400 2563700 2406800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8941 2193 9291 44371 44346 44346 1 FGIHPVAGR ADLVKMLTEQGKKVRFGIHPVAGRMPGQLN QGKKVRFGIHPVAGRMPGQLNVLLAEAGVP R F G G R M 1 1 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 1 0 0 9 0 952.52428 Q13423;E9PCX7;A0A590UK15 Q13423 960 968 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0017857 77.674 By MS/MS By MS/MS By matching 1 1 1 1.1465 0.95411 39.83 3 Plateau 0.65678 0.6411 NaN 1 0 Median 1.3444 1.0732 NaN 1 0 Median 0.4391 0.49012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75358000 35522000 39836000 14337000 8256900 6079900 60413000 26878000 33536000 607880 386960 220920 0 0 0 0 0 0 0 0 0 8942 2814 9292 44372;44373;44374 44347;44348;44349;44350 44349 4 FGIQAQMVTTDFQK AMKGKNCVAIAADRRFGIQAQMVTTDFQKI RFGIQAQMVTTDFQKIFPMGDRLYIGLAGL R F G Q K I 1 0 0 1 0 3 0 1 0 1 0 1 1 2 0 0 2 0 0 1 0 0 14 0 1612.7919 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 28 41 PSMB3 Proteasome subunit beta type-3 yes no 2 2.2819E-07 113.69 By MS/MS By matching By matching By matching 3 2 1 1 1.26 1.0684 14.822 7 Median 1.1573 1.0684 16.537 3 0 Median 1.2193 1.0364 2.8914 2 0 Median NaN NaN NaN 0 0 Median 1.4002 1.121 NaN 1 0 Median 1.4082 1.4472 NaN 1 0 Median NaN NaN NaN 0 0 Median 96018000 46090000 49928000 88839000 42827000 46012000 6320000 2812300 3507700 0 0 0 89857 28815 61041 768940 421910 347030 0 0 0 8943 2391 9293;9294 44375;44376;44377;44378;44379;44380;44381 44351;44352;44353;44354 44354 1102 4 FGISEPGNQEK TKEGFSIPVSADGFKFGISEPGNQEKKSEK DGFKFGISEPGNQEKKSEKPLENGTGFQAQ K F G E K K 0 0 1 0 0 1 2 2 0 1 0 1 0 1 1 1 0 0 0 0 0 0 11 0 1204.5724 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 1900 1910 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.00019975 96.331 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 0.83377 0.87109 17 7 Median NaN NaN NaN 0 0 Median 0.83871 0.73837 23.378 2 0 Median 0.75424 0.81841 11.797 2 0 Median 0.96992 0.95304 NaN 1 1 Median 0.92522 0.97463 NaN 1 0 Median 0.80262 0.6876 NaN 1 0 Median 56540000 30522000 26019000 0 0 0 9442900 4756400 4686600 33733000 18864000 14869000 5889000 3123800 2765200 3056400 1407200 1649300 4419000 2370400 2048600 8944 2401;525;3762 9295 44382;44383;44384;44385;44386;44387;44388 44355;44356;44357;44358;44359;44360;44361;44362;44363 44355 9 FGISSVPTK VPVSLESKKAARAARFGISSVPTKGLSSDN AARAARFGISSVPTKGLSSDNKPMVNLDKL R F G T K G 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 2 1 0 0 1 0 0 9 0 934.51238 P82979;H0YHG0;F8VZQ9 P82979 127 135 SARNP SAP domain-containing ribonucleoprotein yes no 2 0.00073077 101.64 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 3 1 2 0.97438 0.898 24.77 10 Median NaN NaN NaN 0 0 Median 1.4724 1.2761 NaN 1 0 Median 0.86207 0.83201 14.617 3 0 Plateau 1.1285 0.90852 7.014 3 0 Median 0.88714 0.909 NaN 1 0 Median 1.1753 0.98362 51.822 2 0 Median 263720000 132610000 131110000 0 0 0 3284300 1236400 2047900 75461000 41029000 34432000 126800000 59431000 67364000 57287000 30514000 26773000 892620 399470 493150 8945 2661 9296 44389;44390;44391;44392;44393;44394;44395;44396;44397;44398 44364;44365;44366;44367;44368;44369;44370;44371;44372;44373;44374;44375 44373 12 FGIVTSSAGTGTTEDTEAK RKSEDDEKLKKRKERFGIVTSSAGTGTTED TSSAGTGTTEDTEAKKRKRAERFGIA____ R F G A K K 2 0 0 1 0 0 2 3 0 1 0 1 0 1 0 2 5 0 0 1 0 0 19 0 1870.8796 P82979;H0YHG0 P82979 181 199 SARNP SAP domain-containing ribonucleoprotein yes no 2 3.2293E-38 200.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 2 2 1.1811 0.98026 11.621 13 Median NaN NaN NaN 0 0 Median 1.1484 0.96449 NaN 1 0 Median 0.94896 0.91784 12.175 3 0 Median 1.2188 1.0106 7.4109 5 0 Median 1.0096 1.0221 7.1283 2 0 Median 1.3806 1.1248 9.8131 2 0 Median 415520000 200900000 214620000 0 0 0 6392400 2969100 3423200 242780000 122660000 120110000 107660000 47401000 60258000 54353000 25868000 28485000 4339600 1997000 2342600 8946 2661 9297 44399;44400;44401;44402;44403;44404;44405;44406;44407;44408;44409;44410;44411 44376;44377;44378;44379;44380;44381;44382;44383;44384;44385;44386;44387;44388;44389;44390;44391;44392;44393;44394;44395;44396;44397;44398;44399 44376 24 FGIVTSSAGTGTTEDTEAKK RKSEDDEKLKKRKERFGIVTSSAGTGTTED SSAGTGTTEDTEAKKRKRAERFGIA_____ R F G K K R 2 0 0 1 0 0 2 3 0 1 0 2 0 1 0 2 5 0 0 1 0 0 20 1 1998.9746 P82979;H0YHG0 P82979 181 200 SARNP SAP domain-containing ribonucleoprotein yes no 3 6.1518E-19 138.46 By MS/MS By MS/MS 1 2 1.1776 1.034 7.4549 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96295 1.0037 NaN 1 0 Median 1.2296 1.0934 7.8934 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49810000 22733000 27077000 0 0 0 0 0 0 21603000 10800000 10803000 28207000 11934000 16273000 0 0 0 0 0 0 8947 2661 9298 44412;44413;44414 44400;44401;44402 44402 3 FGIYDIDNK TLQLEYRFETVQKLRFGIYDIDNKTPELRD TVQKLRFGIYDIDNKTPELRDDDFLGGAEC R F G N K T 0 0 1 2 0 0 0 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 9 0 1083.5237 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX45;Q5JX56;Q5JX55;Q5JX61;Q5JX52;Q5JX54;Q5JX57;E7EV27 Q99829 76 84 CPNE1 Copine-1 yes no 2 0.0049104 59.245 By MS/MS By matching 1 1 1.3397 1.3216 5.7899 2 Median 1.4558 1.3769 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.233 1.2686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11385000 5027000 6357600 8767800 3855300 4912500 0 0 0 2616800 1171700 1445100 0 0 0 0 0 0 0 0 0 8948 559 9299 44415;44416 44403 44403 1 FGIYDIDNKTPELR TLQLEYRFETVQKLRFGIYDIDNKTPELRD RFGIYDIDNKTPELRDDDFLGGAECSLGQI R F G L R D 0 1 1 2 0 0 1 1 0 2 1 1 0 1 1 0 1 0 1 0 0 0 14 1 1679.8519 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX45;Q5JX56;Q5JX55;Q5JX61;Q5JX52;Q5JX54;Q5JX57;E7EV27 Q99829 76 89 CPNE1 Copine-1 yes no 3 0.048591 24.191 By MS/MS 1 0.91003 0.91558 NaN 1 Median 0.91003 0.91558 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4203800 2288000 1915800 4203800 2288000 1915800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8949 559 9300 44417 44404 44404 1 FGKEWAHATIIPK IREAATSNLKKLVEKFGKEWAHATIIPKVL EKFGKEWAHATIIPKVLAMSGDPNYLHRMT K F G P K V 2 0 0 0 0 0 1 1 1 2 0 2 0 1 1 0 1 1 0 0 0 0 13 1 1496.814 P30153;B3KQV6;E9PH38 P30153 473 485 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 9.2133E-06 117.98 By MS/MS 2 1.3158 1.2685 72.324 2 Median 1.3158 1.2685 72.324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27697000 14407000 13290000 27697000 14407000 13290000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8950 2190 9301 44418;44419 44405 44405 1 FGLFTPGSR GRYVEFNLLYDRGTKFGLFTPGSRIESILM YDRGTKFGLFTPGSRIESILMSLPLTARWE K F G S R I 0 1 0 0 0 0 0 2 0 0 1 0 0 2 1 1 1 0 0 0 0 0 9 0 980.50797 P36551;H0YA22 P36551 405 413 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes no 2 0.00058288 112.17 By MS/MS By matching By matching 1 2 1 1.2105 1.0354 7.8926 4 Median 0.94126 0.93962 NaN 1 0 Median 1.2685 1.0956 4.932 2 0 Median NaN NaN NaN 0 0 Median 1.196 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17347000 8698600 8648000 15979000 8121300 7858100 1195200 501120 694130 0 0 0 171880 76191 95690 0 0 0 0 0 0 8951 2259 9302 44420;44421;44422;44423 44406;44407 44406 2 FGLGPAPFSR ADWLGLFAPHHGPPRFGLGPAPFSRTAFPS HGPPRFGLGPAPFSRTAFPSLPDTDDHKTD R F G S R T 1 1 0 0 0 0 0 2 0 0 1 0 0 2 2 1 0 0 0 0 0 0 10 0 1047.5502 A8MXV4 A8MXV4 89 98 NUDT19 Nucleoside diphosphate-linked moiety X motif 19, mitochondrial yes yes 2 0.0013065 66.692 By MS/MS By matching By matching 2 1 1 1.0772 1.0744 25.952 4 Median 0.8739 0.87409 39.909 2 0 Median NaN NaN NaN 0 0 Median 1.0076 1.0638 NaN 1 0 Median 1.2484 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23036000 11657000 11378000 12247000 6500100 5747100 0 0 0 10159000 4898400 5260600 629490 258830 370660 0 0 0 0 0 0 8952 548 9303 44424;44425;44426;44427 44408;44409 44409 2 FGLIQSMK AMEILELYCDLLLARFGLIQSMKELDSGLA CDLLLARFGLIQSMKELDSGLAESVSTLIW R F G M K E 0 0 0 0 0 1 0 1 0 1 1 1 1 1 0 1 0 0 0 0 0 0 8 0 922.49462 P53990;H3BMU1;H3BUI0;H3BQF7;J3KR23;F5GXM3;H3BRE2 P53990 83 90 IST1 IST1 homolog yes no 2 0.0032257 100.19 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0145 1.0488 54.109 5 Median 0.38848 0.3694 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97371 0.9721 10.738 2 0 Median 1.3389 1.1991 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7815 1.5182 NaN 1 0 Median 33263000 16771000 16492000 3783000 2656400 1126600 0 0 0 24310000 11978000 12332000 4757200 2001700 2755400 0 0 0 413040 135290 277750 8953 2477 9304 44428;44429;44430;44431;44432 44410;44411;44412;44413 44411 4 FGLLDQDLSNIGPAYDNQK HPDPGSKDPEEDYPKFGLLDQDLSNIGPAY DQDLSNIGPAYDNQKQSSAVSTSGNLNGGI K F G Q K Q 1 0 2 3 0 2 0 2 0 1 3 1 0 1 1 1 0 0 1 0 0 0 19 0 2107.0222 F5H8F7;Q9UBL3 F5H8F7 115 133 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.0021361 31.228 By MS/MS 1 0.43892 0.46664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43892 0.46664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3812800 2616200 1196500 0 0 0 0 0 0 3812800 2616200 1196500 0 0 0 0 0 0 0 0 0 8954 1048 9305 44433 44414 44414 1 FGLNIDR ______________________________ PFLDIQKRFGLNIDRWLTIQSGEQPYKMAG R F G D R W 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 833.43955 O43920 O43920 10 16 NDUFS5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 yes yes 2 0.0022148 108.24 By MS/MS By MS/MS By MS/MS 1 1 1 1.345 1.2227 39.052 3 Plateau 0.93059 0.90421 NaN 1 0 Median 1.9438 1.6533 NaN 1 0 Median 0.78539 0.79583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28731000 12214000 16517000 12464000 6124700 6339400 12557000 4051900 8505300 3709900 2037300 1672600 0 0 0 0 0 0 0 0 0 8955 1600 9306 44434;44435;44436 44415;44416;44417;44418;44419;44420 44416 6 FGLNVSSISR KPMVNLDKLKERAQRFGLNVSSISRKSEDD ERAQRFGLNVSSISRKSEDDEKLKKRKERF R F G S R K 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 3 0 0 0 1 0 0 10 0 1078.5771 P82979;H0YHG0;F8VZQ9 P82979 157 166 SARNP SAP domain-containing ribonucleoprotein yes no 2 9.0093E-31 210.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 2 2 1.1678 1.0398 24.162 12 Median 0.99875 0.93389 NaN 1 0 Median 1.3055 1.0941 NaN 1 0 Median 1.0881 1.0521 44.989 3 1 Plateau 1.306 1.084 1.7681 3 0 Median 0.96563 0.97898 14.588 2 0 Median 1.2538 1.0173 1.4285 2 0 Median 430900000 209050000 221850000 28791000 14038000 14754000 2842700 1209600 1633100 152810000 80399000 72415000 94524000 40837000 53687000 139860000 67572000 72285000 12069000 4996700 7071800 8956 2661 9307 44437;44438;44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449 44421;44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441 44436 21 FGLSAAEDITPR STCFTPDSLAALKARFGLSAAEDITPRFRA KARFGLSAAEDITPRFRAACEQQAVALTLQ R F G P R F 2 1 0 1 0 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1275.6459 Q9BUH6 Q9BUH6 64 75 C9orf142 Protein PAXX yes yes 2 6.1703E-08 140.16 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.67992 0.65311 24.79 5 Median 0.59476 0.5645 0.73875 2 2 Median 1.1243 0.94322 NaN 1 0 Median 0.67992 0.65311 NaN 1 0 Median 1.0803 0.89399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50345000 29761000 20584000 30075000 18111000 11963000 432570 225790 206780 18000000 10567000 7433100 1837400 856760 980630 0 0 0 0 0 0 8957 3839 9308 44450;44451;44452;44453;44454 44442;44443;44444;44445;44446;44447 44442 6 FGLYLPLFKPSVSTSK GYKLAVATFAGIENKFGLYLPLFKPSVSTS GLYLPLFKPSVSTSKAIGGGP_________ K F G S K A 0 0 0 0 0 0 0 1 0 0 3 2 0 2 2 3 1 0 1 1 0 0 16 1 1782.992 Q9UJS0 Q9UJS0 654 669 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 3 0.0054672 26.148 By MS/MS 1 1.057 0.99022 NaN 1 Median NaN NaN NaN 0 0 Median 1.057 0.99022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259000 1573200 1685700 0 0 0 3259000 1573200 1685700 0 0 0 0 0 0 0 0 0 0 0 0 8958 4297 9309 44455 44448 44448 1 FGMAAALAGTMR GSGFKVAMHILNNGRFGMAAALAGTMRGII NGRFGMAAALAGTMRGIIAKAVDHATNRTQ R F G M R G 4 1 0 0 0 0 0 2 0 0 1 0 2 1 0 0 1 0 0 0 0 0 12 0 1195.5842 P49748;J3KSR4 P49748 342 353 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.00061547 67.726 By MS/MS By matching By matching 1 1 1 0.96604 0.97104 6.0951 3 Median 0.96254 0.91582 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96604 1.0345 NaN 1 0 Median 1.1197 0.97104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13734000 6678500 7055500 11098000 5182400 5915800 0 0 0 2471900 1415900 1056000 163900 80152 83747 0 0 0 0 0 0 8959 2394 9310 44456;44457;44458 44449;44450 44450 2 FGMFEFLSNHMR LSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ AVRFGMFEFLSNHMRDAQGRLDSTRGLLCG R F G M R D 0 1 1 0 0 0 1 1 1 0 1 0 2 3 0 1 0 0 0 0 0 0 12 0 1514.6799 P53007 P53007 102 113 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2;3 0.00051621 76.465 By MS/MS By MS/MS 2 2 0.99575 0.90209 25.242 4 Median 0.965 0.90209 4.9841 2 0 Median 1.2975 1.091 39.052 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20031000 10215000 9815200 14909000 7928900 6980200 5121500 2286500 2835000 0 0 0 0 0 0 0 0 0 0 0 0 8960 2464 9311 44459;44460;44461;44462 44451;44452;44453;44454;44455;44456 44456 6 FGMLDATDGPGTEDAALR LERERARRREERRKRFGMLDATDGPGTEDA LDATDGPGTEDAALRMEVDRSPGLPMSDLK R F G L R M 3 1 0 3 0 0 1 3 0 0 2 0 1 1 1 0 2 0 0 0 0 0 18 0 1835.836 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9 A0A494BZV2 714 731 MPRIP Myosin phosphatase Rho-interacting protein yes no 2 2.8992E-11 105.65 By MS/MS By matching 1 1 0.76841 0.74961 22.864 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57971 0.63771 NaN 1 0 Median 1.0185 0.88115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4928000 2771300 2156700 0 0 0 0 0 0 4515900 2597400 1918500 412100 173940 238170 0 0 0 0 0 0 8961 453 9312 44463;44464 44457;44458 44458 2 FGNAFLNR ALVVDPKKPFRKLSRFGNAFLNRFMCSQLP PFRKLSRFGNAFLNRFMCSQLPNQVLKSIS R F G N R F 1 1 2 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 937.477 Q9H223 Q9H223 131 138 EHD4 EH domain-containing protein 4 yes yes 2 4.159E-09 170.94 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1 1.1928 1.0419 33.906 6 Median 1.0855 1.0373 NaN 1 0 Median 1.1101 0.96244 NaN 1 0 Median 1.3027 1.3283 NaN 1 0 Median 1.2527 1.0465 NaN 1 0 Median 2.3037 2.3166 NaN 1 0 Median 1.1357 0.97398 NaN 1 0 Median 24619000 11629000 12991000 9102500 4728300 4374200 4098000 2023500 2074500 6815400 3160300 3655100 1315200 547900 767320 1945100 556230 1388900 1343100 612330 730770 8962 3939 9313 44465;44466;44467;44468;44469;44470 44459;44460;44461;44462;44463;44464 44460 6 FGNDGLHEPLDWAQEEGK GLVLERVHFEKYNQRFGNDGLHEPLDWAQE DGLHEPLDWAQEEGKVAAFKEEHIYPTIIG R F G G K V 1 0 1 2 0 1 3 3 1 0 2 1 0 1 1 0 0 1 0 0 0 0 18 0 2040.9177 Q9Y606;F5H1S9;G8JLB3 Q9Y606 347 364 PUS1 tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase yes no 3 7.8559E-05 41.348 By matching By MS/MS 1 1 0.82894 0.84821 6.3195 2 Median 0.92269 0.88698 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74472 0.81114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4461400 2253000 2208400 1644900 873820 771100 0 0 0 2816400 1379100 1437300 0 0 0 0 0 0 0 0 0 8963 4475 9314 44471;44472 44465;44466 44465 2 FGNDVQHFK RESESAPGDFSLSVKFGNDVQHFKVLRDGA FSLSVKFGNDVQHFKVLRDGAGKYFLWVVK K F G F K V 0 0 1 1 0 1 0 1 1 0 0 1 0 2 0 0 0 0 0 1 0 0 9 0 1090.5196 P62993;J3KT38 P62993 101 109 GRB2 Growth factor receptor-bound protein 2 yes no 2 0.039605 33.797 By MS/MS By matching 1 1 1.0612 1.0368 8.2494 2 Median 1.0525 0.97805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0699 1.0991 NaN 1 0 Median NaN NaN NaN 0 0 Median 7008400 3319900 3688500 5918300 2711700 3206600 0 0 0 0 0 0 0 0 0 1090200 608220 481940 0 0 0 8964 2613 9315 44473;44474 44467 44467 1 FGNEITQLAR SEQYVPDVFYKDVDKFGNEITQLARPLPVE KDVDKFGNEITQLARPLPVEYLIIDITTTF K F G A R P 1 1 1 0 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1147.5986 Q8TAT6 Q8TAT6 432 441 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.00036244 116.37 By matching By MS/MS By MS/MS 4 1 1 1.1519 1.0071 20.39 6 Median NaN NaN NaN 0 0 Median 1.0594 0.87486 17.22 4 0 Median 1.2392 1.2648 NaN 1 0 Median 1.3518 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28235000 12527000 15707000 0 0 0 15866000 7291100 8574800 9281400 3915300 5366100 3087200 1321000 1766200 0 0 0 0 0 0 8965 3456 9316 44475;44476;44477;44478;44479;44480 44468;44469;44470;44471 44470 4 FGNEVIPVTVTVK INSYTRSKAAWEAGKFGNEVIPVTVTVKGQ GKFGNEVIPVTVTVKGQPDVVVKEDEEYKR K F G V K G 0 0 1 0 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 4 0 0 13 0 1401.7868 P24752 P24752 231 243 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.00019702 81.525 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.1455 1.0535 16.681 6 Median 0.81238 0.74352 NaN 1 0 Median 1.2597 1.0721 NaN 1 0 Median 0.83964 0.8644 NaN 1 0 Median 1.3468 1.1456 NaN 1 0 Median 1.0416 1.0352 NaN 1 0 Median 1.3331 1.0918 NaN 1 0 Median 333690000 169040000 164660000 97167000 54080000 43087000 78720000 33445000 45275000 145860000 76268000 69594000 7675800 3269000 4406800 4017400 1879400 2137900 250170 94429 155740 8966 2126 9317 44481;44482;44483;44484;44485;44486 44472;44473;44474;44475;44476;44477;44478;44479 44473 8 FGNPLLVQDVESYDPVLNPVLNR FLDDAFRKNLESALRFGNPLLVQDVESYDP DVESYDPVLNPVLNREVRRTGGRVLITLGD R F G N R E 0 1 3 2 0 1 1 1 0 0 4 0 0 1 3 1 0 0 1 4 0 0 23 0 2597.349 Q14204;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3629 3651 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 6.065E-35 145.43 By MS/MS By MS/MS 2 3 0.61875 0.57363 18.386 5 Median 0.56219 0.56593 1.9094 2 0 Median 0.7129 0.59833 23.349 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9934000 5660400 4273700 3328800 1980900 1348000 6605200 3679500 2925700 0 0 0 0 0 0 0 0 0 0 0 0 8967 2865 9318 44487;44488;44489;44490;44491 44480;44481;44482;44483 44483 4 FGNTEQGFK VGTGFKSNFSEKASKFGNTEQGFKFGHVDQ SEKASKFGNTEQGFKFGHVDQENSPSFMFQ K F G F K F 0 0 1 0 0 1 1 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 9 0 1026.4771 P49792 P49792 1852 1860 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0036618 63.565 By MS/MS By MS/MS By matching 1 2 1 1.114 1.1351 42.043 4 Median NaN NaN NaN 0 0 Median 0.59069 0.51498 NaN 1 0 Median 1.1391 1.247 0.31981 2 0 Median 1.1068 1.0356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13365000 6370200 6995000 0 0 0 3969200 1969500 1999800 8608300 4034700 4573600 787640 366010 421630 0 0 0 0 0 0 8968 2401 9319 44492;44493;44494;44495 44484;44485 44485 2 FGNVYLAR TIDDFEIGRPLGKGKFGNVYLAREKKSHFI RPLGKGKFGNVYLAREKKSHFIVALKVLFK K F G A R E 1 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 8 0 938.4974 Q96GD4;J3QLN8;J3KT86;J3QR41;J3KTD6;J3KRJ2;B4DXA6;A3KFJ1;Q5QPD4;A0A0A0MSY3;Q5Y191;A3KFJ0;Q9UQB9;O14965 Q96GD4 88 95 AURKB;AURKC;AURKA Aurora kinase B;Aurora kinase C;Aurora kinase A yes no 2 0.0044267 81.635 By matching By MS/MS By MS/MS By matching 1 3 2 3 1.2663 1.1726 21.091 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6279 1.6511 NaN 1 0 Median 1.2663 1.109 13.616 3 0 Median 1.0824 1.1733 12.437 2 0 Median 1.4254 1.2693 27.464 3 0 Median 54511000 23565000 30947000 0 0 0 0 0 0 11634000 4667500 6966900 4131400 1774800 2356600 9187200 4277300 4909900 29558000 12845000 16713000 8969 3656 9320 44496;44497;44498;44499;44500;44501;44502;44503;44504 44486;44487;44488 44486 3 FGPALSVK GEDMDDERLKDLFGKFGPALSVKVMTDESG LKDLFGKFGPALSVKVMTDESGKSKGFGFV K F G V K V 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 817.46979 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YBN4;H0YAP2 P11940 214 221 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 0.0046696 80.229 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 0.97832 0.86181 6.3321 8 Median 0.97068 0.88859 3.0833 2 0 Median 0.98585 0.82392 7.5911 3 0 Plateau NaN NaN NaN 0 0 Median 1.0096 0.86903 2.8073 2 0 Median NaN NaN NaN 0 0 Median 1.0553 0.8711 NaN 1 0 Median 65864000 31963000 33901000 34755000 17161000 17595000 24387000 11535000 12852000 0 0 0 3209900 1569700 1640200 0 0 0 3511500 1697200 1814200 8970 1973 9321 44505;44506;44507;44508;44509;44510;44511;44512 44489;44490;44491;44492;44493;44494;44495;44496;44497;44498 44490 10 FGPGVAFR SATSSFGGLGGGSVRFGPGVAFRAPSIHGG LGGGSVRFGPGVAFRAPSIHGGSGGRGVSV R F G F R A 1 1 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 1 0 0 8 0 849.44972 CON__P08727;P08727;C9JM50 CON__P08727 25 32 KRT19 Keratin, type I cytoskeletal 19 yes no 2 0.0023516 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 4 6 1.1099 1.0455 19.85 18 Median 0.8244 0.79858 4.8167 2 0 Median 1.5978 1.3346 6.291 2 0 Median 0.76152 0.80377 37.07 2 1 Median 1.4046 1.1014 1.4757 2 0 Median 1.0329 1.03 6.4905 4 0 Median 1.2151 0.97482 14.988 6 0 Median 368190000 181760000 186440000 21793000 12069000 9724300 2819300 1095200 1724200 198180000 102290000 95888000 11208000 4429100 6779300 86530000 41002000 45528000 47666000 20873000 26793000 + 8971 752 9322 44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527;44528;44529;44530 44499;44500;44501;44502;44503;44504;44505;44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516 44500 18 FGPIPLGSLGWK GREDRFLNSFASMHRFGPIPLGSLGWKTVK MHRFGPIPLGSLGWKTVKQPVYVVDVSKGI R F G W K T 0 0 0 0 0 0 0 3 0 1 2 1 0 1 2 1 0 1 0 0 0 0 12 0 1270.7074 A0A3B3ISG8;Q16795 A0A3B3ISG8 223 234 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.0034893 45.997 By MS/MS By matching 1 1 0.79263 0.7201 NaN 1 Median 0.79263 0.7201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20126000 11390000 8736300 20023000 11346000 8676600 0 0 0 0 0 0 0 0 0 0 0 0 103060 43346 59710 8972 424 9323 44531;44532 44517 44517 1 FGPLASVK NPQMNEEMLCQEFGRFGPLASVKIMWPRTD LCQEFGRFGPLASVKIMWPRTDEERARERN R F G V K I 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 817.46979 O15042;E7ET15;H0Y8D9;E7EW00 O15042 297 304 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.010149 77.282 By MS/MS By MS/MS By MS/MS 1 3 1 1.0156 1.0537 11.618 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9947 1.0692 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0368 1.0728 4.5994 2 2 Median 1.0369 0.85466 NaN 1 1 Median 27166000 13779000 13388000 0 0 0 0 0 0 7017200 3532800 3484400 0 0 0 17711000 8941300 8769600 2438300 1304700 1133600 8973 1515 9324 44533;44534;44535;44536;44537 44518;44519;44520;44521;44522 44518 5 FGPLTPELMVPR SKIIPALQSRCTRFRFGPLTPELMVPRLEH RFRFGPLTPELMVPRLEHVVEEEKVDISED R F G P R L 0 1 0 0 0 0 1 1 0 0 2 0 1 1 3 0 1 0 0 1 0 0 12 0 1355.7271 P40937;F5H5S0 P40937 174 185 RFC5 Replication factor C subunit 5 yes no 2 0.0044584 43.512 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 0.68059 0.67557 23.393 7 Median 0.68059 0.67557 NaN 1 0 Median 0.97761 0.84301 NaN 1 0 Median 0.5875 0.58688 7.8797 2 0 Median 0.88073 0.75603 NaN 1 0 Median 0.89485 0.95157 NaN 1 0 Median 0.59934 0.48917 NaN 1 0 Median 21741000 12787000 8953800 7066400 4207400 2858900 2552000 1236900 1315100 9920700 6201700 3719100 463240 242720 220520 1321000 644760 676250 417700 253700 164000 8974 2293 9325 44538;44539;44540;44541;44542;44543;44544 44523;44524;44525 44524 3 FGPLVEQGQSR ASEGAERSLSAIRERFGPLVEQGQSRAATL IRERFGPLVEQGQSRAATLSTLAGQPLLER R F G S R A 0 1 0 0 0 2 1 2 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1216.62 CON__Q03247 CON__Q03247 198 208 yes yes 2 1.1742E-05 127.4 By MS/MS By MS/MS By MS/MS 2 2 2 0.090323 0.077092 120.52 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34207 0.33048 152.14 2 2 Median 0.090323 0.076078 22.089 2 2 Median 0.042257 0.042337 64.54 2 2 Median NaN NaN NaN 0 0 Median 114070000 107430000 6642600 0 0 0 0 0 0 11690000 9208000 2481700 26267000 24145000 2121500 76113000 74073000 2039400 0 0 0 + 8975 767 9326 44545;44546;44547;44548;44549;44550 44526;44527;44528;44529;44530;44531;44532 44526 7 FGPYESYDSR SYGMDNHSGGGGGSRFGPYESYDSRSSLGG GGGSRFGPYESYDSRSSLGGRDLYRSGYGF R F G S R S 0 1 0 1 0 0 1 1 0 0 0 0 0 1 1 2 0 0 2 0 0 0 10 0 1219.5146 Q5BKZ1 Q5BKZ1 71 80 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.0020106 61.78 By MS/MS By matching By MS/MS By MS/MS 1 1 5 2 1.005 0.98849 15.344 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73353 0.74911 NaN 1 0 Median 1.3678 1.1417 NaN 1 0 Median 0.95484 0.98849 10.931 5 0 Median 1.2246 1.0223 19.581 2 0 Median 72807000 35526000 37281000 0 0 0 0 0 0 8816500 4792100 4024500 1531300 729130 802200 59122000 28550000 30572000 3337800 1455400 1882300 8976 3042 9327 44551;44552;44553;44554;44555;44556;44557;44558;44559 44533;44534;44535;44536;44537 44534 5 FGPYYTEPVIAGLDPK YTLMSMVANLLYEKRFGPYYTEPVIAGLDP GPYYTEPVIAGLDPKTFKPFICSLDLIGCP R F G P K T 1 0 0 1 0 0 1 2 0 1 1 1 0 1 3 0 1 0 2 1 0 0 16 0 1765.8927 P49720;A0A087WUL2 P49720 100 115 PSMB3 Proteasome subunit beta type-3 yes no 2 0.00013275 61.641 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.72701 0.66006 17.902 6 Median 0.62241 0.58119 15.841 2 0 Median 0.77793 0.66615 2.4193 2 0 Median 0.69272 0.6653 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88356 0.9104 NaN 1 0 Median NaN NaN NaN 0 0 Median 39039000 22640000 16399000 31211000 18139000 13072000 4766700 2612900 2153800 2389700 1422500 967270 0 0 0 670920 465270 205650 0 0 0 8977 2391 9328 44560;44561;44562;44563;44564;44565 44538;44539;44540;44541;44542;44543 44539 6 FGQAATMEGIGAIGGTPPAFNR MPDGTLGLTPPTTERFGQAATMEGIGAIGG EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY R F G N R A 4 1 1 0 0 1 1 5 0 2 0 0 1 2 2 0 2 0 0 0 0 0 22 0 2162.0579 Q15233 Q15233 435 456 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 1.2105E-162 293.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 9 6 14 3 0.89098 0.83839 15.963 38 Median 0.97161 0.94476 14.324 3 0 Median 1.241 1.0802 9.8958 3 0 Plateau 0.77736 0.83182 18.154 9 1 Median 1.0427 0.89326 5.7352 6 0 Median 0.74845 0.77995 14.376 14 2 Median 1.0583 0.90849 6.9033 3 0 Plateau 854950000 478420000 376530000 10927000 5735800 5191600 1539600 543950 995640 710600000 401810000 308790000 27519000 12824000 14695000 102150000 56474000 45676000 2213100 1026000 1187100 8978 2935 9329;9330 44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603 44544;44545;44546;44547;44548;44549;44550;44551;44552;44553;44554;44555;44556;44557;44558;44559;44560;44561;44562;44563;44564;44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580;44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598;44599 44556 1613 56 FGQDIISPLLSVK NSTGEPVWKVLIYDRFGQDIISPLLSVKEL DRFGQDIISPLLSVKELRDMGITLHLLLHS R F G V K E 0 0 0 1 0 1 0 1 0 2 2 1 0 1 1 2 0 0 0 1 0 0 13 0 1415.8024 Q8WVM8;G3V4I1;G3V5F3;J3KNG4;G3V363;H0YJS6;G3V2M8 Q8WVM8 51 63 SCFD1 Sec1 family domain-containing protein 1 yes no 2 0.010317 54.471 By matching By MS/MS By MS/MS By matching 2 2 1 1 0.92812 0.92193 14.773 5 Median 0.85478 0.84114 25.228 2 0 Median 0.92812 0.78013 NaN 1 0 Median 0.88655 0.94254 NaN 1 0 Median 1.0421 0.92193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14041000 7351700 6689200 4102700 2182700 1920000 7996800 4184100 3812700 1867400 945250 922180 73955 39614 34342 0 0 0 0 0 0 8979 3503 9331 44604;44605;44606;44607;44608;44609 44600;44601 44601 2 FGQGAHHAAGQAGNEAGR GIHHAAGQVGKEAEKFGQGAHHAAGQAGNE GAHHAAGQAGNEAGRFGQGVHHGLSEGWKE K F G G R F 5 1 1 0 0 2 1 5 2 0 0 0 0 1 0 0 0 0 0 0 0 0 18 0 1734.7935 Q6UWP8 Q6UWP8 242 259 SBSN Suprabasin yes no 3 0.05107 19.036 By MS/MS 1 0.39593 0.35325 NaN 1 Median NaN NaN NaN 0 0 Median 0.39593 0.35325 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 346420 315210 31215 0 0 0 346420 315210 31215 0 0 0 0 0 0 0 0 0 0 0 0 8980 3188 9332 44610 44602 44602 1 FGQGDLPKPINSDFR ANKSGSSFVHQASFKFGQGDLPKPINSDFR FGQGDLPKPINSDFRSVFSTKEGQWDCSAC K F G F R S 0 1 1 2 0 1 0 2 0 1 1 1 0 2 2 1 0 0 0 0 0 0 15 1 1689.8475 P49792 P49792 1459 1473 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.00010341 51.643 By MS/MS By matching By MS/MS By MS/MS 1 2 3 1 0.8719 0.8571 21.978 7 Median 0.92541 0.95265 NaN 1 0 Median 0.98969 0.94473 17.735 2 0 Median 0.71528 0.8571 32.266 3 0 Median 0.79736 0.76976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83893000 46145000 37748000 4783900 2651700 2132200 4326300 2153400 2172900 74147000 41050000 33097000 635350 289450 345910 0 0 0 0 0 0 8981 2401 9333 44611;44612;44613;44614;44615;44616;44617 44603;44604;44605;44606;44607;44608;44609;44610;44611 44606 9 FGQGGAGPVGGQGPR TMSGSMMGSDMRTERFGQGGAGPVGGQGPR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE R F G P R G 1 1 0 0 0 2 0 7 0 0 0 0 0 1 2 0 0 0 0 1 0 0 15 0 1340.6585 P23246 P23246 667 681 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 2.0774E-19 188.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 11 10 8 4 0.95746 0.82835 24.234 37 Median 1.0499 1.0268 9.3805 2 0 Median 1.0364 0.89957 21.344 4 0 Median 0.76984 0.79614 34.097 10 1 Median 1.0557 0.88062 21.563 9 0 Median 0.78322 0.78912 20.508 8 1 Median 1.1111 0.87706 7.0985 4 0 Median 781430000 414300000 367130000 6675000 2961100 3713900 49017000 24718000 24299000 325670000 185130000 140540000 214530000 102660000 111870000 136910000 75561000 61345000 48634000 23266000 25368000 8982 2107 9334 44618;44619;44620;44621;44622;44623;44624;44625;44626;44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643;44644;44645;44646;44647;44648;44649;44650;44651;44652;44653;44654;44655;44656 44612;44613;44614;44615;44616;44617;44618;44619;44620;44621;44622;44623;44624;44625;44626;44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643;44644;44645;44646;44647;44648;44649;44650;44651;44652;44653;44654;44655;44656;44657;44658;44659;44660;44661;44662;44663;44664;44665;44666;44667;44668;44669;44670;44671;44672;44673;44674;44675;44676;44677;44678;44679 44618 68 FGQGVDNAAGQAGNEAGR GVHHGANQAGSEAGKFGQGVDNAAGQAGNE GVDNAAGQAGNEAGRFGQGVHHAAGQAGNE K F G G R F 4 1 2 1 0 2 1 5 0 0 0 0 0 1 0 0 0 0 0 1 0 0 18 0 1717.7768 Q6UWP8 Q6UWP8 152 169 SBSN Suprabasin yes yes 2 1.4555E-11 89.013 By MS/MS By MS/MS By MS/MS 1 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5900700 5900700 0 1341900 1341900 0 0 0 0 0 0 0 2943000 2943000 0 0 0 0 1615700 1615700 0 8983 3188 9335 44657;44658;44659;44660;44661;44662;44663 44680;44681;44682;44683;44684;44685;44686 44681 7 FGQGVHHAAGQAGNEAGR GVDNAAGQAGNEAGRFGQGVHHAAGQAGNE GVHHAAGQAGNEAGRFGQGVHHAAGQAGNE R F G G R F 4 1 1 0 0 2 1 5 2 0 0 0 0 1 0 0 0 0 0 1 0 0 18 0 1762.8248 Q6UWP8 Q6UWP8 170 187 SBSN Suprabasin yes no 4 0.046203 20.368 By MS/MS 1 0.10876 0.091396 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10876 0.091396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 382450 335040 47413 0 0 0 0 0 0 0 0 0 382450 335040 47413 0 0 0 0 0 0 8984 3188 9336 44664 44687 44687 1 FGQIMIENLR RAMFINYEQVNMGDRFGQIMIENLRRRQCD NMGDRFGQIMIENLRRRQCDLAGVETCKSL R F G L R R 0 1 1 0 0 1 1 1 0 2 1 0 1 1 0 0 0 0 0 0 0 0 10 0 1219.6383 I3L4A2;Q9UIC8;I3L2E3;I3L537 I3L4A2 127 136 LCMT1 Leucine carboxyl methyltransferase 1 yes no 2 0.0074197 47.823 By MS/MS By matching 1 1 1.2742 1.1679 7.8232 2 Median 1.2445 1.2343 NaN 1 0 Median 1.3046 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6270700 2574400 3696300 5098300 2073000 3025300 1172400 501430 670950 0 0 0 0 0 0 0 0 0 0 0 0 8985 1291 9337 44665;44666 44688 44688 1 FGQLTYVR SHPFVGLAFKLEVGRFGQLTYVRSYQGELK FKLEVGRFGQLTYVRSYQGELKKGDTIYNT R F G V R S 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 1 1 0 0 8 0 982.52362 Q96RP9;F8WAU4;C9IZ01 Q96RP9 365 372 GFM1 Elongation factor G, mitochondrial yes no 2 0.0027464 127.84 By MS/MS By MS/MS 1 1 1.0536 0.95281 14.585 2 Median 0.90824 0.85945 NaN 1 0 Median 1.2221 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19756000 9897300 9858800 9331600 5014900 4316700 10425000 4882400 5542100 0 0 0 0 0 0 0 0 0 0 0 0 8986 3728 9338 44667;44668 44689;44690 44689 2 FGQMLGSNMTEFHSQISK VNLKYDSWHKEVLSKFGQMLGSNMTEFHSQ MLGSNMTEFHSQISKSRQELEQHSVDTAST K F G S K S 0 0 1 0 0 2 1 2 1 1 1 1 2 2 0 3 1 0 0 0 0 0 18 0 2040.9397 Q14204 Q14204 1131 1148 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 1.0434E-13 143.91 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 6 3 7 5 1 1 1.0391 1.1069 24.215 23 Median 1.0566 1.0602 25.819 6 0 Median 1.3212 0.87965 21.836 3 0 Plateau 1.0228 1.0882 9.6008 7 0 Median 1.3268 1.284 37.088 5 0 Median 1.3805 1.4626 NaN 1 0 Median 0.96752 0.85095 NaN 1 0 Median 437290000 209680000 227610000 241290000 116100000 125200000 36992000 16174000 20817000 146610000 72005000 74609000 9745400 4230400 5515000 2046700 863670 1183000 600700 312480 288220 8987 2865 9339;9340;9341 44669;44670;44671;44672;44673;44674;44675;44676;44677;44678;44679;44680;44681;44682;44683;44684;44685;44686;44687;44688;44689;44690;44691 44691;44692;44693;44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704;44705;44706;44707;44708;44709;44710 44699 1550;1551 20 FGQSSVLAIHAR HAREKPFKCPECGKRFGQSSVLAIHARTHL GKRFGQSSVLAIHARTHLPGRTYSCPDCGK R F G A R T 2 1 0 0 0 1 0 1 1 1 1 0 0 1 0 2 0 0 0 1 0 0 12 0 1284.6939 H3BS42;Q9H5H4 H3BS42 407 418 ZNF768 Zinc finger protein 768 yes no 2;3 0.00010895 90.906 By matching By MS/MS 1 2 0.97134 0.98986 19.538 3 Median 1.1345 1.1344 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84453 0.87397 17.609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17862000 8128700 9733500 2626800 1135000 1491800 0 0 0 15235000 6993700 8241800 0 0 0 0 0 0 0 0 0 8988 1232 9342 44692;44693;44694 44711;44712 44712 2 FGQTKPVYVYR WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQ RVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ R F G Y R F 0 1 0 0 0 1 0 1 0 0 0 1 0 1 1 0 1 0 2 2 0 0 11 1 1356.719 P46100 P46100 2154 2164 ATRX Transcriptional regulator ATRX yes yes 3 0.00052893 57.836 By matching By MS/MS By matching 1 1 1 0.75088 0.85156 8.5279 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60981 0.73475 NaN 1 0 Median 0.75088 0.85185 NaN 1 0 Median 0.97601 0.85156 NaN 1 0 Median 14901000 8731400 6169500 0 0 0 0 0 0 0 0 0 3984800 2608200 1376600 9471600 5370800 4100800 1444500 752400 692100 8989 2339 9343 44695;44696;44697 44713 44713 1 FGQVYTEAK PVLLNCLMYKMCYYRFGQVYTEAKRPPGFD KMCYYRFGQVYTEAKRPPGFDRVRNAEIGN R F G A K R 1 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 1 1 0 0 9 0 1041.5131 P46977 P46977 647 655 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.0004404 127.46 By MS/MS By MS/MS 2 3 1.3191 1.1714 9.2083 5 Median 1.118 1.0822 15.709 2 0 Median 1.3229 1.2032 2.0373 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33522000 13666000 19856000 5439900 2255400 3184500 28082000 11410000 16672000 0 0 0 0 0 0 0 0 0 0 0 0 8990 2352 9344 44698;44699;44700;44701;44702 44714;44715;44716;44717;44718;44719 44716 6 FGQYAGHVVPTILEK AAKCLTGLAVGLRKKFGQYAGHVVPTILEK FGQYAGHVVPTILEKFKEKKPQVVQALQEA K F G E K F 1 0 0 0 0 1 1 2 1 1 1 1 0 1 1 0 1 0 1 2 0 0 15 0 1657.8828 Q14008 Q14008 355 369 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 3.0856E-09 130.56 By MS/MS By MS/MS By MS/MS By matching 2 4 4 2 0.94406 0.90163 23.087 12 Median 0.93195 0.90096 2.3853 2 0 Median NaN NaN NaN 0 0 Median 1.1147 1.2155 11.861 4 0 Linear 0.9224 0.82191 30.635 4 0 Median NaN NaN NaN 0 0 Median 1.009 0.8527 17.527 2 0 Median 96520000 48152000 48368000 23838000 12351000 11488000 0 0 0 60685000 29584000 31101000 11256000 5794700 5461600 0 0 0 740530 422800 317730 8991 2850 9345 44703;44704;44705;44706;44707;44708;44709;44710;44711;44712;44713;44714 44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732 44726 13 FGSALVPTGNLQLR GCDMFDCVFPTRTARFGSALVPTGNLQLRK RFGSALVPTGNLQLRKKVFEKDFGPIDPEC R F G L R K 1 1 1 0 0 1 0 2 0 0 3 0 0 1 1 1 1 0 0 1 0 0 14 0 1471.8147 Q9BXR0;K7EL95 Q9BXR0 289 302 QTRT1 Queuine tRNA-ribosyltransferase yes no 2 8.243E-06 91.867 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.73463 0.70939 20.518 4 Median 0.68902 0.68664 NaN 1 0 Median 0.78325 0.67626 NaN 1 0 Median 0.67561 0.73289 NaN 1 0 Median 1.2298 1.0461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17490000 9947600 7542900 11055000 6551400 4503300 3039100 1680400 1358700 3010400 1547200 1463100 386160 168470 217690 0 0 0 0 0 0 8992 3880 9346 44715;44716;44717;44718 44733;44734;44735 44735 3 FGSEFSPELQASFQK FRLLGNVLVVVLARRFGSEFSPELQASFQK FGSEFSPELQASFQKVVTGVANALAHRYH_ R F G Q K V 1 0 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 15 0 1700.8046 CON__Q3SX09 CON__Q3SX09 173 187 yes yes 2 4.6965E-07 89.266 By MS/MS By MS/MS 1 1 0.019055 0.018169 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.019055 0.018169 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21274000 21106000 168180 0 0 0 0 0 0 19026000 18858000 168180 0 0 0 2248000 2248000 0 0 0 0 + 8993 777 9347 44719;44720 44736;44737 44736 2 FGSGMNMGR GMEGPFGGGMENMGRFGSGMNMGRINEILS MENMGRFGSGMNMGRINEILSNALKRGEII R F G G R I 0 1 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 0 9 0 955.40041 A0A087X0X3;P52272;M0R019;M0QYL3;M0QZM1 A0A087X0X3 363 371 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 6.2019E-07 162.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 3 5 4 1.2102 1.0163 18.967 20 Median 1.3968 1.3848 8.7937 4 1 Median 1.1039 0.9545 9.6177 3 0 Median 0.93186 0.94145 NaN 1 0 Median 1.1559 0.99586 11.716 3 0 Median 0.89988 0.891 19.29 5 0 Median 1.417 1.2692 9.0245 4 1 Linear 178410000 87146000 91265000 13294000 5293000 8000900 21461000 9901900 11559000 25482000 13174000 12308000 8119800 3691200 4428600 89583000 47053000 42530000 20471000 8033400 12438000 8994 116;1423 9348;9349 44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739;44740 44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750 44741 42 13 FGSLLPIHPVTSG KAECLEKFPVIQHFKFGSLLPIHPVTSG__ FKFGSLLPIHPVTSG_______________ K F G S G - 0 0 0 0 0 0 0 2 1 1 2 0 0 1 2 2 1 0 0 1 0 0 13 0 1323.7187 A6PVN5;Q15257;F6WIT2;Q68CR8;B7ZBQ0 A6PVN5 317 329 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator yes no 2 0.0024177 65.305 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13943000 0 0 12016000 0 0 1383300 0 0 543350 0 0 0 0 0 0 0 0 0 0 0 8995 533 9350 44741;44742;44743 44751;44752;44753;44754 44751 4 FGSTADALVSDDETTR YKLLKKEMTLDLKTKFGSTADALVSDDETT GSTADALVSDDETTRLVTSLEDDFDEELDT K F G T R L 2 1 0 3 0 0 1 1 0 0 1 0 0 1 0 2 3 0 0 1 0 0 16 0 1683.7588 Q5JRA6 Q5JRA6 279 294 MIA3 Melanoma inhibitory activity protein 3 yes yes 2 0.00013392 54.7 By matching By MS/MS 1 1 1.0652 0.9493 17.038 2 Median 1.1369 1.0708 NaN 1 0 Median 0.99802 0.84155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10213000 4827400 5385100 8000900 3663100 4337800 2211600 1164300 1047300 0 0 0 0 0 0 0 0 0 0 0 0 8996 3049 9351 44744;44745 44755 44755 1 FGSVPHGGFGMGFER SGLTEVYQWYLDLRRFGSVPHGGFGMGFER FGSVPHGGFGMGFERYLQCILGVDNIKDVI R F G E R Y 0 1 0 0 0 0 1 5 1 0 0 0 1 3 1 1 0 0 0 1 0 0 15 0 1580.7194 Q96I59;H0YE96 Q96I59 437 451 NARS2 Probable asparagine--tRNA ligase, mitochondrial yes no 3 0.05157 11.901 By MS/MS By matching 1 1 0.94947 0.93715 12.109 2 Median 0.87198 0.86025 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0338 1.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5537900 3082300 2455600 4487300 2490600 1996800 0 0 0 1050600 591780 458810 0 0 0 0 0 0 0 0 0 8997 3676 9352 44746;44747 44756;44757 44756 2 FGTAIAAVK NSCTTENKNEPCGARFGTAIAAVKDLNLDG EPCGARFGTAIAAVKDLNLDGFNDIVIGAP R F G V K D 3 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 876.5069 P56199 P56199 571 579 ITGA1 Integrin alpha-1 yes yes 2 0.0036618 63.565 By MS/MS 1 1.08 0.95231 NaN 1 Median NaN NaN NaN 0 0 Median 1.08 0.95231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1810600 766080 1044500 0 0 0 1810600 766080 1044500 0 0 0 0 0 0 0 0 0 0 0 0 8998 2509 9353 44748 44758;44759 44758 2 FGTEELFKDEATDGGGDNK KTGSMSKQELDDILKFGTEELFKDEATDGG ELFKDEATDGGGDNKEGEDSSVIHYDDKAI K F G N K E 1 0 1 3 0 0 3 4 0 0 1 2 0 2 0 0 2 0 0 0 0 0 19 1 2028.8912 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9 Q14839 1221 1239 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 3.5884E-08 64.83 By MS/MS By matching By matching 1 2 1 0.98196 1.0537 16.516 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83951 0.97158 NaN 1 0 Median 1.1832 1.1548 1.4716 2 0 Median 0.7741 0.81831 NaN 1 0 Median NaN NaN NaN 0 0 Median 15330000 7133200 8196800 0 0 0 0 0 0 10698000 4903600 5794300 2597700 1159100 1438600 2034400 1070600 963850 0 0 0 8999 246 9354 44749;44750;44751;44752 44760;44761 44761 2 FGTEELFKDEATDGGGDNKEGEDSSVIHYDDK KTGSMSKQELDDILKFGTEELFKDEATDGG NKEGEDSSVIHYDDKAIERLLDRNQDETED K F G D K A 1 0 1 6 0 0 5 5 1 1 1 3 0 2 0 2 2 0 1 1 0 0 32 2 3503.5125 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9 Q14839 1221 1252 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 4;5 2.1265E-21 65.766 By MS/MS 2 0.8276 0.95884 0.39016 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8276 0.95884 0.39016 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59733000 27634000 32099000 0 0 0 0 0 0 59733000 27634000 32099000 0 0 0 0 0 0 0 0 0 9000 246 9355 44753;44754 44762;44763;44764;44765 44764 4 FGTFGGLGSK SLEGGKVKGKHGKLKFGTFGGLGSKSKGHY HGKLKFGTFGGLGSKSKGHYEVTGSDDETG K F G S K S 0 0 0 0 0 0 0 4 0 0 1 1 0 2 0 1 1 0 0 0 0 0 10 0 969.49198 Q09666 Q09666 5822 5831 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00048497 107.15 By MS/MS By matching By MS/MS By MS/MS 2 1 3 3 1.326 1.1902 26.314 8 Median 1.326 1.2467 NaN 1 0 Median 1.1172 0.97443 NaN 1 0 Median 1.426 1.5233 47.073 3 0 Median 1.3259 1.1776 4.2769 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31647000 13716000 17931000 1679600 695090 984480 3004300 1332200 1672100 19804000 8537800 11266000 7158600 3150800 4007800 0 0 0 0 0 0 9001 2749 9356 44755;44756;44757;44758;44759;44760;44761;44762;44763 44766;44767;44768;44769;44770;44771;44772;44773 44767 8 FGTINIVHPK VTGAWSAKAAEEAKKFGTINIVHPKLGSYT EEAKKFGTINIVHPKLGSYTKIPDPSTWNL K F G P K L 0 0 1 0 0 0 0 1 1 2 0 1 0 1 1 0 1 0 0 1 0 0 10 0 1124.6342 Q9Y617 Q9Y617 118 127 PSAT1 Phosphoserine aminotransferase yes yes 2 0.00066706 96.253 By MS/MS By MS/MS 1 2 1.0948 1.0079 26.577 3 Median 1.0948 1.0079 NaN 1 0 Median 1.2177 1.0341 37.527 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50052000 22644000 27408000 33421000 15397000 18024000 16631000 7246300 9384400 0 0 0 0 0 0 0 0 0 0 0 0 9002 4476 9357 44764;44765;44766 44774;44775 44774 2 FGTTAVPTYQVGR SLKEIGFINYYGMQRFGTTAVPTYQVGRAI QRFGTTAVPTYQVGRAILQNSWTEVMDLIL R F G G R A 1 1 0 0 0 1 0 2 0 0 0 0 0 1 1 0 3 0 1 2 0 0 13 0 1395.7147 Q96PZ0;E7EUH7 Q96PZ0 380 392 PUS7 Pseudouridylate synthase 7 homolog yes no 2 0.00012642 84.054 By MS/MS By matching 1 1 1.1324 1.0326 25.888 2 Median 0.90882 0.85986 NaN 1 0 Median 1.4109 1.24 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13555000 6722700 6832300 12068000 6102700 5965500 1486800 619960 866840 0 0 0 0 0 0 0 0 0 0 0 0 9003 3716 9358 44767;44768 44776 44776 1 FGTTINHNIGAVSITANELGSGTISK F G S K 2 0 3 0 0 0 1 4 1 4 1 1 0 1 0 3 4 0 0 1 0 0 26 0 2601.3398 REV__O75976 yes yes 3 0.063293 6.4334 By MS/MS 1 0.6976 0.69191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6976 0.69191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6735400 3777000 2958400 0 0 0 0 0 0 6735400 3777000 2958400 0 0 0 0 0 0 0 0 0 + 9004 4534 9359 44769 44777 44777 1 FGTVLTEHVAAAELGAR EDRTLYERIVSRLRRFGTVLTEHVAAAELG TVLTEHVAAAELGARGEALGPRDAGTRART R F G A R G 4 1 0 0 0 0 2 2 1 0 2 0 0 1 0 0 2 0 0 2 0 0 17 0 1740.9159 H0Y8X4;O43598 H0Y8X4 48 64 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 2;3 2.4932E-14 158.4 By MS/MS By MS/MS 3 1 0.93361 0.88742 24.1 4 Median 0.90665 0.85307 17.371 3 0 Median 1.4342 1.1884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111910000 55430000 56479000 95366000 48540000 46826000 16544000 6890200 9653900 0 0 0 0 0 0 0 0 0 0 0 0 9005 1164 9360 44770;44771;44772;44773 44778;44779;44780;44781;44782;44783 44778 6 FGVAPDHPEVK VDIYEKQPVPFGLVRFGVAPDHPEVKNVIN GLVRFGVAPDHPEVKNVINTFTQTAHSGRC R F G V K N 1 0 0 1 0 0 1 1 1 0 0 1 0 1 2 0 0 0 0 2 0 0 11 0 1194.6033 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3;J3QKZ8;J3QQW7 P22570 80 90 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2;3 0.00034395 71.614 By MS/MS By MS/MS 2 2 0.89263 0.84052 33.928 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66845 0.66124 NaN 1 0 Median 1.192 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15877000 4545200 11331000 0 0 0 0 0 0 9957400 2060100 7897300 5919200 2485100 3434100 0 0 0 0 0 0 9006 2102 9361 44774;44775;44776;44777 44784;44785;44786;44787;44788;44789 44789 6 FGVEQDR ELETGPKASHGYGGKFGVEQDRMDKSAVGH ASHGYGGKFGVEQDRMDKSAVGHEYQSKLS K F G D R M 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 849.39808 Q14247 Q14247 88 94 CTTN Src substrate cortactin yes yes 2 0.056644 38.133 By MS/MS 2 1.1048 0.94462 23.132 2 Median NaN NaN NaN 0 0 Median 1.1048 0.94462 23.132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828600 1418800 1409800 0 0 0 2828600 1418800 1409800 0 0 0 0 0 0 0 0 0 0 0 0 9007 2868 9362 44778;44779 44790 44790 1 FGVEQDVDMVFASFIR VDLPAVSEKDIQDLKFGVEQDVDMVFASFI GVEQDVDMVFASFIRKASDVHEVRKVLGEK K F G I R K 1 1 0 2 0 1 1 1 0 1 0 0 1 3 0 1 0 0 0 3 0 0 16 0 1858.8924 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 231 246 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00047727 48.741 By MS/MS By matching By matching 2 1 1 1.1685 1.1886 10.282 4 Median 1.1917 1.1964 3.9851 2 0 Median 1.1292 0.98457 NaN 1 0 Median 1.1678 1.2147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5617500 2533500 3084000 3855000 1714300 2140700 1051800 512870 538910 710750 306310 404440 0 0 0 0 0 0 0 0 0 9008 2005;1237 9363;9364 44780;44781;44782;44783 44791;44792 44791 413 2 FGVEQPEGDEDLTK KGKNICEGGEEMDNKFGVEQPEGDEDLTKE KFGVEQPEGDEDLTKEKGHGGCGRYQPRIR K F G T K E 0 0 0 2 0 1 3 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 14 0 1562.71 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 164 177 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.00099739 52.693 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.92983 0.91162 17.991 4 Median NaN NaN NaN 0 0 Median 0.99694 0.88352 NaN 1 0 Median 0.86724 0.96497 NaN 1 0 Median 1.0341 0.94061 NaN 1 0 Median 0.6215 0.65333 NaN 1 0 Median NaN NaN NaN 0 0 Median 13700000 7359000 6340700 0 0 0 2450000 1263100 1186900 6273500 3557700 2715900 1309000 609280 699680 3667200 1929000 1738200 0 0 0 9009 486 9365 44784;44785;44786;44787 44793;44794;44795;44796 44793 4 FGVFNYSPFR AMQEMEVYVENIRRKFGVFNYSPFRTPYTP NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP K F G F R T 0 1 1 0 0 0 0 1 0 0 0 0 0 3 1 1 0 0 1 1 0 0 10 0 1232.5978 Q9ULU4 Q9ULU4 357 366 ZMYND8 Protein kinase C-binding protein 1 no no 2 0.011936 41.979 By MS/MS By matching By MS/MS 2 2 3 1.1006 1.1337 11.843 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95246 1.014 3.0696 2 0 Median 1.3828 1.2193 5.8966 2 0 Median 1.1006 1.1337 14.348 3 0 Median NaN NaN NaN 0 0 Median 7498900 3799300 3699600 0 0 0 0 0 0 4771900 2367100 2404800 557510 221300 336200 2169500 1211000 958530 0 0 0 9010 4328 9366 44788;44789;44790;44791;44792;44793;44794 44797;44798 44797 2 FGVIFAGAQK DMSSNFLSKPVDVSKFGVIFAGAQKNVGSA VDVSKFGVIFAGAQKNVGSAGVTVVIVRDD K F G Q K N 2 0 0 0 0 1 0 2 0 1 0 1 0 2 0 0 0 0 0 1 0 0 10 0 1036.5706 Q9Y617 Q9Y617 191 200 PSAT1 Phosphoserine aminotransferase yes yes 2 0.0012062 86.472 By MS/MS By MS/MS 1 2 1.3039 1.1534 24.62 2 Median 1.4948 1.3727 NaN 1 1 Median 1.1374 0.96911 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68585000 25101000 43483000 52350000 18130000 34220000 16235000 6971200 9263400 0 0 0 0 0 0 0 0 0 0 0 0 9011 4476 9367 44795;44796;44797 44799;44800;44801 44799 3 FGVLSDNFK IQPNMRLRQLGVAKKFGVLSDNFKGKRIVL LGVAKKFGVLSDNFKGKRIVLVDDSIVRGN K F G F K G 0 0 1 1 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1025.5182 Q06203 Q06203 373 381 PPAT Amidophosphoribosyltransferase yes yes 2 0.0055515 57.281 By MS/MS By matching 2 1 1.2671 1.318 9.5147 3 Plateau 1.311 1.2554 9.5594 2 0 Median 1.2671 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6755900 2887200 3868600 6034800 2570800 3464000 721050 316490 404560 0 0 0 0 0 0 0 0 0 0 0 0 9012 2722 9368 44798;44799;44800 44802 44802 1 FGVQMDR KHCSQVDSVRGFGGKFGVQMDRVDQSAVGF SVRGFGGKFGVQMDRVDQSAVGFEYQGKTE K F G D R V 0 1 0 1 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 7 0 851.39597 Q14247 Q14247 125 131 CTTN Src substrate cortactin yes yes 2 0.016334 68.915 By matching By MS/MS 1 2 1.3049 1.1317 45.099 3 Median 2.3297 2.3046 NaN 1 0 Median 1.2272 1.0632 8.8327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10184000 4309300 5874700 2013600 592030 1421600 8170400 3717300 4453100 0 0 0 0 0 0 0 0 0 0 0 0 9013 2868 9369 44801;44802;44803 44803;44804 44804 2 FGVQTDR KHESQKDYVKGFGGKFGVQTDRQDKCALGW YVKGFGGKFGVQTDRQDKCALGWDHQEKLQ K F G D R Q 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 821.40317 Q14247 Q14247 236 242 CTTN Src substrate cortactin yes yes 2 0.016244 69.176 By MS/MS 2 1.4466 1.2544 24.784 2 Median NaN NaN NaN 0 0 Median 1.4466 1.2544 24.784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5536100 2275400 3260700 0 0 0 5536100 2275400 3260700 0 0 0 0 0 0 0 0 0 0 0 0 9014 2868 9370 44804;44805 44805 44805 1 FGVSSESKPEEVKK MSEGFKFSKPIGDFKFGVSSESKPEEVKKD KFGVSSESKPEEVKKDSKNDNFKFGLSSGL K F G K K D 0 0 0 0 0 0 3 1 0 0 0 3 0 1 1 3 0 0 0 2 0 0 14 2 1549.7988 P49790 P49790 961 974 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.033802 19.323 By matching By MS/MS By matching By MS/MS By matching By matching 1 3 2 3 1 2 0.82195 0.86314 13.261 12 Median 0.78154 0.85568 NaN 1 0 Median 0.82891 0.78724 8.0391 3 0 Plateau 0.80251 0.94689 12.19 2 0 Median 0.91781 0.93022 10.331 3 0 Median 0.56215 0.65805 NaN 1 0 Median 0.80208 0.84905 1.4216 2 0 Median 15677000 8174300 7502600 1052200 654570 397620 5556000 2948400 2607600 4061500 2194000 1867500 2490200 1217800 1272400 1578000 702390 875600 938890 457110 481780 9015 2400 9371 44806;44807;44808;44809;44810;44811;44812;44813;44814;44815;44816;44817 44806;44807;44808;44809 44809 4 FGVSSSSSGPSQTLTSTGNFK TSSSSSNSAASSSFKFGVSSSSSGPSQTLT SSGPSQTLTSTGNFKFGDQGGFKIGVSSDS K F G F K F 0 0 1 0 0 1 0 3 0 0 1 1 0 2 1 7 3 0 0 1 0 0 21 0 2074.9807 P49790 P49790 905 925 NUP153 Nuclear pore complex protein Nup153 yes yes 2 2.0436E-22 112.15 By matching By MS/MS By matching By matching 1 2 1 1 0.88651 0.95433 23.338 5 Median 0.77691 0.74608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0742 1.1668 28.429 2 0 Median 1.0708 0.97005 NaN 1 0 Median 0.88651 0.93946 NaN 1 0 Median NaN NaN NaN 0 0 Median 28451000 11471000 16980000 5093200 2969900 2123200 0 0 0 20886000 7166000 13720000 583450 252490 330960 1888200 1083000 805230 0 0 0 9016 2400 9372 44818;44819;44820;44821;44822 44810;44811 44810 2 FGVSSVAEAMALGR SAKVVYGDTDSVMCRFGVSSVAEAMALGRE RFGVSSVAEAMALGREAADWVSGHFPSPIR R F G G R E 3 1 0 0 0 0 1 2 0 0 1 0 1 1 0 2 0 0 0 2 0 0 14 0 1393.7024 M0R2B7;P28340;A0A087WYJ2;M0QZR8;M0QXE6;A0A2R8Y705 M0R2B7 789 802 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 3.4453E-08 105.86 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.88887 0.82796 28.047 6 Median 0.89375 0.86418 NaN 1 0 Median 0.97731 0.83278 14.709 2 0 Median 0.92062 0.98083 30.016 2 0 Median 0.52723 0.51616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11185000 5523200 5661600 5157600 2648300 2509300 2997600 1416700 1581000 2903300 1375600 1527600 126350 82662 43692 0 0 0 0 0 0 9017 1436 9373 44823;44824;44825;44826;44827;44828 44812;44813;44814;44815;44816 44813 5 FGVTSGSSELEK GQTLMINQLIDMEWKFGVTSGSSELEKVGS EWKFGVTSGSSELEKVGSIFLQLKLVVKKG K F G E K V 0 0 0 0 0 0 2 2 0 0 1 1 0 1 0 3 1 0 0 1 0 0 12 0 1239.5983 A0A2R8Y620;A0A2R8Y7U2;A0A2R8Y600;A0A2R8Y455;Q86VX2 A0A2R8Y620 141 152 COMMD7 COMM domain-containing protein 7 yes no 2 0.00059269 72.434 By MS/MS 1 1.0328 0.96053 NaN 1 Median 1.0328 0.96053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6583800 3391100 3192800 6583800 3391100 3192800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9018 359 9374 44829 44817;44818 44818 2 FGVVANNNR VAYISLYSYFSSRGRFGVVANNNRHVKDLY FSSRGRFGVVANNNRHVKDLYLIPLSAQDP R F G N R H 1 1 3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 989.50428 Q9BTC0 Q9BTC0 1146 1154 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00075421 100.07 By MS/MS 1 0.80969 0.89913 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80969 0.89913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2218800 1370500 848250 0 0 0 0 0 0 2218800 1370500 848250 0 0 0 0 0 0 0 0 0 9019 3824 9375 44830 44819;44820 44820 2 FGVVLDEIKPSSAPELQAVR ERDVFLYRAYLAQRKFGVVLDEIKPSSAPE DEIKPSSAPELQAVRMFADYLAHESRRDSI K F G V R M 2 1 0 1 0 1 2 1 0 1 2 1 0 1 2 2 0 0 0 3 0 0 20 1 2154.1685 O14579;M0QXB4;M0R061 O14579 66 85 COPE Coatomer subunit epsilon yes no 3 8.3411E-08 60.034 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0005 0.93842 15.254 4 Median 0.81259 0.81287 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0615 1.1594 NaN 1 0 Median 0.9431 0.89001 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0904 0.98946 NaN 1 0 Median 11617000 6724000 4893300 7067500 4221500 2846000 0 0 0 2640700 1543900 1096800 788650 408400 380250 0 0 0 1120500 550270 570230 9020 1409 9376 44831;44832;44833;44834 44821;44822;44823;44824;44825 44822 5 FGVVTEVVMIYDAEK PHNCGETELREYFKKFGVVTEVVMIYDAEK FGVVTEVVMIYDAEKQRPRGFGFITFEDEQ K F G E K Q 1 0 0 1 0 0 2 1 0 1 0 1 1 1 0 0 1 0 1 4 0 0 15 0 1698.8539 K7EQ55;K7EK33;Q96EP5;K7EQ02 K7EQ55 136 150 DAZAP1 DAZ-associated protein 1 yes no 2 0.00034863 58.676 By MS/MS By matching 3 2 0.98699 1.0679 9.364 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98692 0.97335 5.8783 3 0 Median 1.2835 1.1421 9.4945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8641600 4156600 4485100 0 0 0 0 0 0 8468000 4088200 4379800 173610 68324 105280 0 0 0 0 0 0 9021 1367 9377;9378 44835;44836;44837;44838;44839 44826;44827;44828;44829;44830 44830 448 5 FGVVVVGVGR ______________________________ EPERKFGVVVVGVGRAGSVRMRDLRNPHPS K F G G R A 0 1 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 5 0 0 10 0 987.58655 P53004;C9J1E1 P53004 9 18 BLVRA Biliverdin reductase A yes no 2 0.00034189 92.491 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1.2122 1.1225 4.0256 6 Median 1.1249 1.086 5.7893 2 1 Median 1.3821 1.1516 NaN 1 0 Median 1.125 1.1138 NaN 1 0 Median 1.3388 1.131 4.3804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52468000 24978000 27490000 41924000 20463000 21461000 5316700 2131700 3185000 4826700 2207900 2618800 401380 175810 225570 0 0 0 0 0 0 9022 2463 9379 44840;44841;44842;44843;44844;44845 44831;44832;44833;44834;44835;44836 44832 6 FGVYDIDNK TFIIDYYFEVVQKLKFGVYDIDNKTIELSD VVQKLKFGVYDIDNKTIELSDDDFLGECEC K F G N K T 0 0 1 2 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 1 0 0 9 0 1069.508 O75131;A0A087WYQ3;E5RHZ0;A0A087WXR6;A0A087WUS8 O75131 77 85 CPNE3 Copine-3 yes no 2 0.0078737 50.607 By MS/MS By matching By matching By matching 1 1 1 1 0.96211 0.83723 34.342 4 Median 1.051 0.98532 NaN 1 0 Median 1.0914 0.92932 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53051 0.46265 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88074 0.75427 NaN 1 0 Median 12796000 5933400 6862900 6958300 2994900 3963400 4705800 2188100 2517700 0 0 0 903280 625370 277910 0 0 0 228850 125060 103790 9023 1645 9380 44846;44847;44848;44849 44837;44838 44837 2 FGYHIIMVEGR GMDKPVFTDPPVKTKFGYHIIMVEGRK___ VKTKFGYHIIMVEGRK______________ K F G G R K 0 1 0 0 0 0 1 2 1 2 0 0 1 1 0 0 0 0 1 1 0 0 11 0 1320.6649 Q9Y237 Q9Y237 120 130 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 2;3 8.547E-05 143.04 By MS/MS By MS/MS By MS/MS 3 5 4 1.0978 1.052 91.019 12 Median 0.96431 0.96694 184.1 3 0 Median 1.2179 1.0273 33.456 5 0 Median 1.0978 1.1082 2.8721 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187810000 82453000 105360000 20547000 2766200 17781000 4537400 2072900 2464400 162730000 77614000 85115000 0 0 0 0 0 0 0 0 0 9024 4370 9381;9382 44850;44851;44852;44853;44854;44855;44856;44857;44858;44859;44860;44861 44839;44840;44841;44842;44843;44844;44845;44846;44847;44848;44849;44850;44851 44843 1951 13 FGYHIIMVEGRK GMDKPVFTDPPVKTKFGYHIIMVEGRK___ KTKFGYHIIMVEGRK_______________ K F G R K - 0 1 0 0 0 0 1 2 1 2 0 1 1 1 0 0 0 0 1 1 0 0 12 1 1448.7598 Q9Y237 Q9Y237 120 131 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 3 0.00030909 54.7 By MS/MS By MS/MS 1 1 1.9488 1.9668 56.433 2 Median 2.9738 2.9314 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2771 1.3197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41491000 16127000 25364000 13962000 3879900 10082000 0 0 0 27530000 12247000 15283000 0 0 0 0 0 0 0 0 0 9025 4370 9383 44862;44863 44852;44853 44853 2 FGYQFTQQGPR LEMAKMLEENTNILKFGYQFTQQGPRTRAA NILKFGYQFTQQGPRTRAANAITKNNDLVR K F G P R T 0 1 0 0 0 3 0 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 11 0 1327.6309 Q9NYL9;H0YKU1;H0YNJ8 Q9NYL9 318 328 TMOD3 Tropomodulin-3 yes no 2 5.8939E-10 176.79 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.0301 0.92971 9.6453 4 Median 1.0071 1.0041 NaN 1 0 Median 1.0827 0.92267 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0538 0.93681 NaN 1 0 Median 0.78316 0.79807 NaN 1 0 Median NaN NaN NaN 0 0 Median 25863000 13613000 12250000 12229000 5895300 6333800 3318600 1621600 1697000 0 0 0 1269700 650600 619080 9045600 5445100 3600500 0 0 0 9026 4178 9384 44864;44865;44866;44867 44854;44855;44856 44854 3 FGYSVNR ______________________________ KGKTRRQKFGYSVNRKRLNRNARRKAAPRI K F G N R K 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 7 0 841.40825 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1;D6RC60;A0A087WU10 D6RIC3 13 19 NOP16 Nucleolar protein 16 yes no 2 0.0046223 99.919 By MS/MS 1 1.2336 1.2313 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2336 1.2313 NaN 1 0 Median NaN NaN NaN 0 0 Median 5664700 2584700 3079900 0 0 0 0 0 0 0 0 0 0 0 0 5664700 2584700 3079900 0 0 0 9027 136 9385 44868 44857;44858 44857 2 FGYVDFESAEDLEK NDLAVVDVRIGMTRKFGYVDFESAEDLEKA KFGYVDFESAEDLEKALELTGLKVFGNEIK K F G E K A 1 0 0 2 0 0 3 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 14 0 1647.7304 P19338 P19338 349 362 NCL Nucleolin yes yes 2 6.5451E-08 101.93 By MS/MS By matching By MS/MS By MS/MS 4 2 2 2 1.1259 1.0666 11.904 10 Median 1.0334 0.99722 9.219 4 0 Median 1.1741 1.0356 3.4215 2 0 Median 1.1259 1.2118 1.1327 2 0 Median NaN NaN NaN 0 0 Median 1.2094 1.1981 15.687 2 0 Median NaN NaN NaN 0 0 Median 48081000 21941000 26140000 18320000 8797700 9522000 4801400 2174700 2626700 14920000 6735800 8183800 0 0 0 10041000 4232900 5807700 0 0 0 9028 2063 9386 44869;44870;44871;44872;44873;44874;44875;44876;44877;44878 44859;44860;44861;44862;44863;44864;44865;44866;44867 44864 9 FHALGPIYYR KRVNLAIWDTAGQERFHALGPIYYRDSNGA AGQERFHALGPIYYRDSNGAILVYDITDED R F H Y R D 1 1 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 2 0 0 0 10 0 1235.6451 Q9UL25 Q9UL25 81 90 RAB21 Ras-related protein Rab-21 yes yes 2;3 0.00010686 110.63 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.0463 0.92765 22.529 7 Median 1.0062 0.95666 5.4949 2 0 Median 0.99203 0.83876 14.246 2 1 Median 0.83695 0.80384 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2264 1.1988 NaN 1 0 Median 1.7682 1.4471 NaN 1 0 Median 98254000 48902000 49352000 79940000 39400000 40540000 9407400 4501000 4906500 7188600 4263200 2925300 0 0 0 1346400 602060 744340 371070 135400 235670 9029 4320 9387 44879;44880;44881;44882;44883;44884;44885;44886 44868;44869;44870;44871;44872;44873;44874;44875;44876 44871 9 FHATVSFDTDTGLK PEVLLTLDILKHGKRFHATVSFDTDTGLKQ RFHATVSFDTDTGLKQALETVNDYNPLMKD R F H L K Q 1 0 0 2 0 0 0 1 1 0 1 1 0 2 0 1 3 0 0 1 0 0 14 0 1537.7413 Q14204 Q14204 310 323 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00021956 66.004 By MS/MS 1 0.54331 0.48096 NaN 1 Median NaN NaN NaN 0 0 Median 0.54331 0.48096 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11413000 8742100 2670600 0 0 0 11413000 8742100 2670600 0 0 0 0 0 0 0 0 0 0 0 0 9030 2865 9388 44887 44877 44877 1 FHDFDHR ALDERYHSDFNRQDRFHDFDHRDRGRYPDH SDFNRQDRFHDFDHRDRGRYPDHSVDRREG R F H H R D 0 1 0 2 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 7 0 972.42021 Q15424;K7EII0;Q14151 Q15424 746 752 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 2 0.019913 60.961 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.97805 1.0212 3.4243 5 Median NaN NaN NaN 0 0 Median 1.2425 1.0928 NaN 1 0 Median 0.95555 1.0187 NaN 1 0 Median 1.1996 1.0256 NaN 1 0 Median 0.96753 1.0097 1.6022 2 0 Median NaN NaN NaN 0 0 Median 3225400 1556800 1668600 0 0 0 436980 168560 268420 392850 201360 191480 721020 326990 394030 1674600 859880 814720 0 0 0 9031 2951;2859 9389 44888;44889;44890;44891;44892 44878;44879;44880;44881 44879 4 FHDFDHRDR ALDERYHSDFNRQDRFHDFDHRDRGRYPDH FNRQDRFHDFDHRDRGRYPDHSVDRREGSR R F H D R G 0 2 0 3 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 9 1 1243.5483 Q15424;K7EII0;Q14151 Q15424 746 754 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3 0.042206 21.464 By MS/MS By MS/MS 1 4 0.98867 1.1906 8.5058 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98867 1.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0344 1.1133 9.1209 4 0 Median NaN NaN NaN 0 0 Median 7280800 3653600 3627200 0 0 0 0 0 0 1299400 655460 643980 0 0 0 5981300 2998200 2983200 0 0 0 9032 2951;2859 9390 44893;44894;44895;44896;44897 44882;44883 44882 2 FHDFLGDSWGILFSHPR VAPNFEANTTVGRIRFHDFLGDSWGILFSH DFLGDSWGILFSHPRDFTPVCTTELGRAAK R F H P R D 0 1 0 2 0 0 0 2 2 1 2 0 0 3 1 2 0 1 0 0 0 0 17 0 2029.9799 P30041 P30041 25 41 PRDX6 Peroxiredoxin-6 yes yes 2;3 0.00011733 43.297 By MS/MS By MS/MS 2 3 1.0012 0.93695 16.033 5 Median 1.1163 1.0505 16.182 2 0 Median 1.0012 0.85596 12.033 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15762000 7007700 8754400 3863500 1930800 1932700 11899000 5076900 6821700 0 0 0 0 0 0 0 0 0 0 0 0 9033 2179 9391 44898;44899;44900;44901;44902 44884;44885;44886;44887;44888 44884 5 FHDIDDVKK WKLIAINANDPEASKFHDIDDVKKFKPGYL DPEASKFHDIDDVKKFKPGYLEATLNWFRL K F H K K F 0 0 0 3 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 1 0 0 9 1 1115.5611 Q9H2U2;D6R967;H0Y9D8 Q9H2U2 217 225 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 2 0.010153 52.403 By MS/MS By MS/MS By matching 1 1 1 1.5822 1.569 27.204 3 Median 1.0443 1.0138 NaN 1 0 Median 1.7414 1.569 NaN 1 0 Median 1.5822 1.6705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5259100 2131200 3127900 2049500 961650 1087800 2639200 994870 1644400 570400 174680 395720 0 0 0 0 0 0 0 0 0 9034 3947 9392 44903;44904;44905 44889;44890;44891 44891 3 FHDLLSQLDDQYSR DWEHAANDVSFATIRFHDLLSQLDDQYSRF RFHDLLSQLDDQYSRFSLENNFLLQHNIRK R F H S R F 0 1 0 3 0 2 0 0 1 0 3 0 0 1 0 2 0 0 1 0 0 0 14 0 1735.8166 P42224;J3KPM9;E7EPD2;D2KFR9;E7ENM1 P42224 57 70 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2;3 1.4823E-05 101.95 By MS/MS By MS/MS 2 1 1.1997 1.1491 17.063 3 Median 1.2946 1.2349 10.189 2 1 Median 1.0902 0.94467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15004000 6204300 8799400 11685000 4645700 7039100 3318900 1558600 1760300 0 0 0 0 0 0 0 0 0 0 0 0 9035 2308 9393 44906;44907;44908 44892;44893;44894;44895 44894 3 FHDPDSAVVAQHLTNTVFVDR DDSPLPVSSRVCFVKFHDPDSAVVAQHLTN AVVAQHLTNTVFVDRALIVVPYAEGVIPDE K F H D R A 2 1 1 3 0 1 0 0 2 0 1 0 0 2 1 1 2 0 0 4 0 0 21 0 2367.1608 Q5T760;Q05519;B4DWT1 Q5T760 83 103 SRSF11 Serine/arginine-rich splicing factor 11 yes no 3;4 4.4483E-12 72.086 By MS/MS 2 1.0035 1.022 22.008 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0035 1.022 22.008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23052000 13238000 9814100 0 0 0 0 0 0 23052000 13238000 9814100 0 0 0 0 0 0 0 0 0 9036 2717 9394 44909;44910 44896;44897;44898;44899 44896 4 FHEICSNLVK RIFGSNKWTTEQQQRFHEICSNLVKTRRRA EQQQRFHEICSNLVKTRRRAVGWWKRLFTL R F H V K T 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1245.6176 H3BN98;H3BPJ2;Q15041 H3BN98 105 114 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 2;3 0.00011018 114.89 By MS/MS By matching 3 1 1.1341 1.0485 10.429 4 Median NaN NaN NaN 0 0 Median 1.1595 0.99549 8.1722 3 0 Median 1.1093 1.1867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19652000 8640400 11011000 0 0 0 17256000 7471100 9784900 2395800 1169300 1226500 0 0 0 0 0 0 0 0 0 9037 1213 9395 44911;44912;44913;44914 44900;44901;44902 44902 3 FHEQFIVR EASKQLESSRQLASRFHEQFIVREDLMGLA SRQLASRFHEQFIVREDLMGLAIGTHGANI R F H V R E 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 8 0 1074.5611 R9WNI0;A8MQB8;G3V0J0;Q06787;A0A087WY29;Q8IXW7;A0A087WXI3;A0A087WWR6 R9WNI0 219 226 FMR1 Fragile X mental retardation protein 1 yes no 2 0.015349 70.268 By MS/MS 1 1.1566 1.2204 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1566 1.2204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3735600 1425000 2310600 0 0 0 0 0 0 3735600 1425000 2310600 0 0 0 0 0 0 0 0 0 9038 539 9396 44915 44903 44903 1 FHFFEDQLR FGLGKVSYIGVCQSKFHFFEDQLRGAGFGP GVCQSKFHFFEDQLRGAGFGPQHNRHCLLT K F H L R G 0 1 0 1 0 1 1 0 1 0 1 0 0 3 0 0 0 0 0 0 0 0 9 0 1237.588 Q56VL3 Q56VL3 110 118 OCIAD2 OCIA domain-containing protein 2 yes yes 2;3 0.00078048 98.299 By MS/MS By MS/MS By MS/MS 2 2 2 1.2136 1.1761 7.5403 6 Median 1.2136 1.1761 0.011085 2 0 Median 1.5774 1.3119 4.1003 2 0 Median 1.1073 1.1219 3.1325 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36855000 16580000 20275000 27078000 12452000 14626000 5706100 2288900 3417200 4071000 1839100 2231900 0 0 0 0 0 0 0 0 0 9039 3037 9397 44916;44917;44918;44919;44920;44921 44904;44905;44906;44907;44908;44909;44910;44911;44912;44913 44907 10 FHFSDKPQPDSKPTYSR KSRICAQLARFSEEKFHFSDKPQPDSKPTY FSDKPQPDSKPTYSRGRSSNAYDPSQMCAE K F H S R G 0 1 0 2 0 1 0 0 1 0 0 2 0 2 3 3 1 0 1 0 0 0 17 2 2035.9752 Q9NRL2 Q9NRL2 941 957 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 4 6.6976E-06 67.605 By MS/MS By MS/MS 2 2 0.77975 0.94822 42.108 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53588 0.65751 44.497 2 1 Median 1.0068 1.1371 18.406 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21545000 11920000 9625300 0 0 0 0 0 0 16001000 9310500 6690900 5543800 2609400 2934400 0 0 0 0 0 0 9040 4084 9398 44922;44923;44924;44925 44914;44915;44916;44917;44918;44919;44920 44915 7 FHHTFSTEIAK QQYQDAANNLREDYKFHHTFSTEIAKFLKV EDYKFHHTFSTEIAKFLKVSQGQLVVMQPE K F H A K F 1 0 0 0 0 0 1 0 2 1 0 1 0 2 0 1 2 0 0 0 0 0 11 0 1316.6513 P13667;A0A499FI48 P13667 336 346 PDIA4 Protein disulfide-isomerase A4 yes no 2;3 3.6664E-05 118.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 1.3434 1.1297 15.808 11 Median 0.98977 0.91381 17.283 2 1 Median 1.3918 1.1952 6.5167 4 1 Median 0.88986 0.92241 13.439 2 1 Median 1.3434 1.1628 12.194 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137370000 62486000 74889000 26143000 13683000 12461000 80907000 33312000 47596000 17600000 10211000 7388600 12724000 5279800 7444200 0 0 0 0 0 0 9041 1993 9399 44926;44927;44928;44929;44930;44931;44932;44933;44934;44935;44936;44937 44921;44922;44923;44924;44925;44926;44927;44928;44929;44930;44931;44932;44933;44934;44935 44928 15 FHINQPALK PQDLDSAIMRRMPTRFHINQPALKQREAIL RRMPTRFHINQPALKQREAILKLILKNENV R F H L K Q 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 9 0 1066.5924 Q8NBU5 Q8NBU5 255 263 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 2 0.00071478 102.72 By MS/MS By MS/MS 1 1 1.009 0.90345 8.7603 2 Median 1.0288 0.96118 NaN 1 0 Median 0.98949 0.84918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10150000 4976800 5173400 6214500 3165300 3049300 3935700 1811600 2124100 0 0 0 0 0 0 0 0 0 0 0 0 9042 3412 9400 44938;44939 44936;44937 44937 2 FHKPEEANEPPLNPHGSAR EQLSGAKHCRNYKFRFHKPEEANEPPLNPH EEANEPPLNPHGSARAEVHLRKSAFDMFNF R F H A R A 2 1 2 0 0 0 3 1 2 0 1 1 0 1 4 1 0 0 0 0 0 0 19 1 2126.0293 Q03164 Q03164 3747 3765 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 4 0.00062891 31.233 By MS/MS By MS/MS 1 1 0.53668 0.56185 1.9368 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48816 0.5542 NaN 1 0 Median 0.59002 0.56959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4002200 2384500 1617700 0 0 0 0 0 0 3142500 1877600 1264900 859720 506920 352800 0 0 0 0 0 0 9043 2708 9401 44940;44941 44938;44939;44940 44939 3 FHLATAEWIAEPVR GGQNVNKVNSKAEVRFHLATAEWIAEPVRQ RFHLATAEWIAEPVRQKIAITHKNKINRLG R F H V R Q 3 1 0 0 0 0 2 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 14 0 1638.8518 Q14197;J3KS15 Q14197 103 116 ICT1 Peptidyl-tRNA hydrolase ICT1, mitochondrial yes no 3 0.00025711 54.524 By MS/MS By matching 1 1 0.83593 0.74987 1.2449 2 Median 0.80085 0.7565 NaN 1 0 Median 0.87254 0.74329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6888600 3670300 3218300 5873600 3111100 2762400 1015000 559130 455840 0 0 0 0 0 0 0 0 0 0 0 0 9044 1329 9402 44942;44943 44941;44942 44941 2 FHLISPLIQK YKKDNKFKIPKAYIRFHLISPLIQKSAANV KAYIRFHLISPLIQKSAANVVLFDIFVNIL R F H Q K S 0 0 0 0 0 1 0 0 1 2 2 1 0 1 1 1 0 0 0 0 0 0 10 0 1194.7125 O43847;G3V1R5;F5H7V1;H0Y5G9 O43847 708 717 NRD1 Nardilysin yes no 2 0.00040999 76.478 By MS/MS By matching 1 1 1.227 1.1244 3.8878 2 Median 1.1909 1.1557 NaN 1 0 Median 1.2642 1.0939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11208000 4995500 6212200 7783300 3585000 4198300 3424400 1410500 2014000 0 0 0 0 0 0 0 0 0 0 0 0 9045 1597 9403 44944;44945 44943;44944 44944 2 FHLQNTLYPQYDPVYR VYIEDVIERVIQYTKFHLQNTLYPQYDPVY HLQNTLYPQYDPVYRLDPHGGGLLSSKAKR K F H Y R L 0 1 1 1 0 2 0 0 1 0 2 0 0 1 2 0 1 0 3 1 0 0 16 0 2053.0058 A0A590UJS4;Q6KC79 A0A590UJS4 1342 1357 NIPBL Nipped-B-like protein yes no 3 6.4852E-11 116.96 By matching By MS/MS By MS/MS 1 2 2 0.68472 0.73531 6.3433 5 Median NaN NaN NaN 0 0 Median 0.93573 0.83224 NaN 1 0 Median 0.67108 0.7214 2.7013 2 0 Median NaN NaN NaN 0 0 Median 0.71524 0.74712 3.9437 2 0 Median NaN NaN NaN 0 0 Median 31076000 18084000 12992000 0 0 0 246140 135830 110310 18205000 10846000 7358700 0 0 0 12625000 7102300 5522700 0 0 0 9046 488 9404 44946;44947;44948;44949;44950 44945;44946;44947;44948;44949;44950 44949 6 FHMDSETHDPIDLQTK RIEKGALTLSSPEVRFHMDSETHDPIDLQT HMDSETHDPIDLQTKELRETNSMVEEFMLL R F H T K E 0 0 0 3 0 1 1 0 2 1 1 1 1 1 1 1 2 0 0 0 0 0 16 0 1912.8625 Q9Y2L1;G3V1J5 Q9Y2L1 639 654 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.0023307 28.58 By matching By matching By MS/MS By matching 1 1 2 1 0.96181 0.93187 12.944 5 Median 0.96181 0.93187 NaN 1 0 Median 0.93461 0.81506 NaN 1 0 Median 0.99449 1.0758 9.1141 2 0 Median 1.0341 0.89207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35991000 17951000 18040000 9508800 4605200 4903700 2812500 1417500 1395000 19176000 9759900 9415700 4494100 2168700 2325400 0 0 0 0 0 0 9047 4384 9405 44951;44952;44953;44954;44955 44951 44951 1 FHMGLYGETGR SAGSPPIRNVTVAYKFHMGLYGETGRLFTE VAYKFHMGLYGETGRLFTESCSISPKLRSI K F H G R L 0 1 0 0 0 0 1 3 1 0 1 0 1 1 0 0 1 0 1 0 0 0 11 0 1266.5815 C9JXQ7;C9JHH5;Q9Y6I9;C9JL43;C9JUC3;C9J7N0;A0A087WTU3 C9JXQ7 52 62 TEX264 Testis-expressed sequence 264 protein yes no 3 4.8784E-05 78.098 By MS/MS 1 1.2185 1.2112 NaN 1 Median 1.2185 1.2112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4165200 1747600 2417600 4165200 1747600 2417600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9048 698 9406 44956 44952;44953 44952 2 FHMVDGNVSGEFTDLVPEK FTHAPATLEADRGGKFHMVDGNVSGEFTDL DGNVSGEFTDLVPEKHIVMKWRFKSWPEGH K F H E K H 0 0 1 2 0 0 2 2 1 0 1 1 1 2 1 1 1 0 0 3 0 0 19 0 2119.9885 O95433;G3V438;H0YJ63 O95433 250 268 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 3 3.8781E-05 41.348 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.92764 0.79935 39.481 5 Median 0.70847 0.66595 NaN 1 0 Median 0.92764 0.79935 NaN 1 0 Median 1.2845 1.3829 27.56 2 0 Median 0.79414 0.67974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13300000 6387000 6913300 2784500 1370900 1413600 2896900 1617700 1279200 7425200 3284800 4140400 193730 113610 80119 0 0 0 0 0 0 9049 1773 9407 44957;44958;44959;44960;44961 44954;44955;44956;44957 44954 4 FHMYEGYPLWK FGFLNGRACVMMQGRFHMYEGYPLWKVTFP MQGRFHMYEGYPLWKVTFPVRVFHLLGVDT R F H W K V 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 0 0 1 2 0 0 0 11 0 1469.6802 P00491;G3V5M2;G3V393 P00491 85 95 PNP Purine nucleoside phosphorylase yes no 2 0.00015191 83.005 By MS/MS 1 0.90718 0.83072 NaN 1 Median 0.90718 0.83072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15075000 7683200 7391700 15075000 7683200 7391700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9050 1821 9408 44962 44958;44959 44959 2 FHNELNAHIK KLKEAKEQQASMEEKFHNELNAHIKLSNLY SMEEKFHNELNAHIKLSNLYKSAADDSEAK K F H I K L 1 0 2 0 0 0 1 0 2 1 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1221.6255 P12270 P12270 275 284 TPR Nucleoprotein TPR yes yes 2;3 0.0009404 60.436 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 2 1.0805 1.0558 55.941 15 Median 1.1123 1.0719 25.07 2 0 Median 1.403 1.2444 49.645 3 0 Median 0.99393 0.93589 11.313 4 0 Linear 1.2175 1.1333 9.973 4 0 Median NaN NaN NaN 0 0 Median 0.49392 0.43821 141.47 2 0 Median 64134000 28770000 35364000 3242600 1308800 1933900 21172000 9716100 11456000 24331000 11061000 13269000 12300000 5207800 7092300 0 0 0 3088300 1476000 1612300 9051 1978 9409 44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975;44976;44977 44960;44961;44962;44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975 44966 16 FHNELNLR RARSCWVLHAFSSLKFHNELNLRNAVELAK HAFSSLKFHNELNLRNAVELAKKSLIEDKE K F H L R N 0 1 2 0 0 0 1 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 1041.5356 O15397 O15397 489 496 IPO8 Importin-8 yes yes 2 0.059596 51.787 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9052 1545 9410 44978 44976 44976 1 FHNWFDDR NYRTTRFLAEEGFYKFHNWFDDRAWYPLGR AEEGFYKFHNWFDDRAWYPLGRIIGGTIYP K F H D R A 0 1 1 2 0 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 8 0 1135.4835 P46977;A0A0C4DH80;E9PN73;E9PI32 P46977 68 75 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 2 0.0023526 114.6 By MS/MS By MS/MS 2 2 1.0863 0.96781 5.5771 4 Median 0.97476 0.93837 6.2601 2 0 Median 1.2009 0.98979 5.0662 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34554000 17128000 17426000 23612000 12193000 11419000 10941000 4935100 6006300 0 0 0 0 0 0 0 0 0 0 0 0 9053 2352 9411 44979;44980;44981;44982 44977;44978;44979;44980 44978 4 FHPASVLSQPQYK RENLVLTGPKEKKVRFHPASVLSQPQYKKI VRFHPASVLSQPQYKKIPPANGQAAAIKAL R F H Y K K 1 0 0 0 0 2 0 0 1 0 1 1 0 1 2 2 0 0 1 1 0 0 13 0 1500.7725 Q9H6S0 Q9H6S0 1003 1015 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 3 0.00031762 58.172 By MS/MS 1 0.88671 0.85773 NaN 1 Median 0.88671 0.85773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8777500 4571600 4205900 8777500 4571600 4205900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9054 3977 9412 44983 44981 44981 1 FHPEPYGLEDDQR QPQVRVGGSSVDLHRFHPEPYGLEDDQRSM HRFHPEPYGLEDDQRSMGYDDLDYGMMSDY R F H Q R S 0 1 0 2 0 1 2 1 1 0 1 0 0 1 2 0 0 0 1 0 0 0 13 0 1601.711 C9JZR2;O60716;E9PRE2 C9JZR2 275 287 CTNND1 Catenin delta-1 yes no 2 0.032411 45.359 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9055 732 9413 44984 44982 44982 1 FHPGSMPVIDDRPADAGSGAGLR STKCKQRASANENSRFHPGSMPVIDDRPAD IDDRPADAGSGAGLRVNTSEGVVLLSYSGQ R F H L R V 3 2 0 3 0 0 0 4 1 1 1 0 1 1 3 2 0 0 0 1 0 0 23 1 2322.1175 Q96T58 Q96T58 2785 2807 SPEN Msx2-interacting protein yes yes 4 6.4211E-18 78.413 By MS/MS 1 0.68215 0.74968 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68215 0.74968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10692000 6141000 4550700 0 0 0 0 0 0 10692000 6141000 4550700 0 0 0 0 0 0 0 0 0 9056 3741 9414 44985 44983 44983 1 FHPIQGHR YFQNHDAADKAAVVKFHPIQGHRVEVKKAV DKAAVVKFHPIQGHRVEVKKAVPKEDIYSG K F H H R V 0 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 0 0 8 0 990.51478 Q13151 Q13151 160 167 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.018086 48.174 By MS/MS By MS/MS By MS/MS 2 1 2 0.85948 0.83236 9.2982 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85517 0.80965 3.9115 2 0 Median 1.1983 1.0054 NaN 1 0 Median 0.83649 0.84993 3.3677 2 0 Median NaN NaN NaN 0 0 Median 5734900 3013900 2721000 0 0 0 0 0 0 1646200 865140 781040 683470 298930 384540 3405300 1849900 1555400 0 0 0 9057 2790 9415 44986;44987;44988;44989;44990 44984;44985;44986;44987;44988 44985 5 FHPLQEHVVK FAQVCSSDEDILCLKFHPLQEHVVKEELLN ILCLKFHPLQEHVVKEELLNALYCEFINRV K F H V K E 0 0 0 0 0 1 1 0 2 0 1 1 0 1 1 0 0 0 0 2 0 0 10 0 1232.6666 Q7KZ85 Q7KZ85 942 951 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.0058692 36.684 By MS/MS By MS/MS 1 1 1.1318 1.0137 7.1468 2 Median NaN NaN NaN 0 0 Median 1.0853 0.96376 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1803 1.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6578200 3265600 3312600 0 0 0 3392700 1842400 1550300 0 0 0 3185500 1423200 1762300 0 0 0 0 0 0 9058 3213 9416 44991;44992 44989;44990;44991 44989 3 FHPNGSTLASAGFDR IMLLSGHEGEVYCCKFHPNGSTLASAGFDR FHPNGSTLASAGFDRLILLWNVYGDCDNYA K F H D R L 2 1 1 1 0 0 0 2 1 0 1 0 0 2 1 2 1 0 0 0 0 0 15 0 1575.743 Q96DI7 Q96DI7 74 88 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2;3 4.4296E-06 80.834 By MS/MS By MS/MS By MS/MS 3 1 1 0.90964 0.99316 16.228 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90102 0.98573 12.821 3 1 Median 1.4054 1.201 NaN 1 0 Median 1.1189 1.1447 NaN 1 0 Median NaN NaN NaN 0 0 Median 58685000 29873000 28812000 0 0 0 0 0 0 45663000 24588000 21075000 4917900 2000500 2917400 8103900 3284300 4819600 0 0 0 9059 3627 9417 44993;44994;44995;44996;44997 44992;44993;44994;44995 44993 3 FHPNSNYVATGSADR LRIFAGHLADVNCTRFHPNSNYVATGSADR FHPNSNYVATGSADRTVRLWDVLNGNCVRI R F H D R T 2 1 2 1 0 0 0 1 1 0 0 0 0 1 1 2 1 0 1 1 0 0 15 0 1634.7437 Q15542 Q15542 635 649 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 3 0.00032565 41.967 By MS/MS By MS/MS 1 1 0.91285 0.87712 5.2891 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84963 0.91055 NaN 1 0 Median 0.98077 0.84493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5242600 2720300 2522200 0 0 0 0 0 0 3786500 1989000 1797500 1456000 731340 724700 0 0 0 0 0 0 9060 2957 9418 44998;44999 44996;44997;44998;44999 44998 4 FHQFLVSETESGNISR NLSRKILRKSPHLEKFHQFLVSETESGNIS HQFLVSETESGNISRQEAVSMIPPLLLNVR K F H S R Q 0 1 1 0 0 1 2 1 1 1 1 0 0 2 0 3 1 0 0 1 0 0 16 0 1849.8959 Q08J23;A0A140T9Y7 Q08J23 145 160 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2;3 2.0799E-11 117.98 By MS/MS By MS/MS By MS/MS 5 1 1 1.2304 1.1298 26.996 7 Median 1.2406 1.1737 32.971 5 2 Median 1.2304 1.0663 NaN 1 0 Median 1.061 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48514000 22486000 26028000 38781000 17809000 20971000 3006400 1506800 1499600 6727000 3170200 3556700 0 0 0 0 0 0 0 0 0 9061 2745 9419 45000;45001;45002;45003;45004;45005;45006 45000;45001;45002;45003;45004;45005;45006;45007;45008;45009;45010;45011 45001 12 FHQLDIDDLQSIR QAAVQQLQAEGLSPRFHQLDIDDLQSIRAL PRFHQLDIDDLQSIRALRDFLRKEYGGLDV R F H I R A 0 1 0 3 0 2 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 0 13 0 1598.8053 O75828;P16152;E9PQ63;A8MTM1 P16152 59 71 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 no no 3 0.00030932 58.674 By MS/MS By matching 2 2 1.2005 1.0706 5.7978 4 Median 1.135 1.0682 1.4905 2 0 Median 1.3274 1.1266 8.3869 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10251000 4495300 5755200 7664200 3332700 4331500 2586400 1162600 1423800 0 0 0 0 0 0 0 0 0 0 0 0 9062 2025;1699 9420 45007;45008;45009;45010 45012;45013 45012 2 FHRPVSEQIVSFYR IQCFTVKPKLDLPPKFHRPVSEQIVSFYRV KFHRPVSEQIVSFYRVNEVQRFEYSRPIRK K F H Y R V 0 2 0 0 0 1 1 0 1 1 0 0 0 2 1 2 0 0 1 2 0 0 14 1 1763.9107 A0A096LNH6;Q14185 A0A096LNH6 1438 1451 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 5.3316E-06 99.669 By MS/MS By MS/MS 1 1 0.90336 0.96619 0.47327 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76742 0.96943 NaN 1 1 Median 1.0634 0.96297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14307000 6987200 7319500 0 0 0 0 0 0 12382000 6052400 6329900 1924500 934810 989640 0 0 0 0 0 0 9063 140 9421 45011;45012 45014;45015 45014 2 FHSEDYIDFLQR IVFKPYQASQHDMCRFHSEDYIDFLQRVSP MCRFHSEDYIDFLQRVSPTNMQGFTKSLNA R F H Q R V 0 1 0 2 0 1 1 0 1 1 1 0 0 2 0 1 0 0 1 0 0 0 12 0 1568.726 O15379 O15379 61 72 HDAC3 Histone deacetylase 3 yes yes 3 0.0032932 36.303 By MS/MS By matching 1 1 1.0127 0.95042 15.083 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85107 0.85427 NaN 1 0 Median 1.2049 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3931600 1799700 2131800 0 0 0 0 0 0 3791100 1744300 2046700 140490 55426 85069 0 0 0 0 0 0 9064 1541 9422 45013;45014 45016 45016 1 FHSFPNVYHELSK EETNSMLKSLGVTTKFHSFPNVYHELSKTE TKFHSFPNVYHELSKTELDILKLWILTKLP K F H S K T 0 0 1 0 0 0 1 0 2 0 1 1 0 2 1 2 0 0 1 1 0 0 13 0 1603.7783 Q5VWZ2 Q5VWZ2 203 215 LYPLAL1 Lysophospholipase-like protein 1 yes yes 3 0.0013061 39.267 By MS/MS 1 1.302 1.2147 NaN 1 Median 1.302 1.2147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10883000 4306200 6577100 10883000 4306200 6577100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9065 3115 9423 45015 45017 45017 1 FHSPFIVENYR PTDWVKVGSTKAVSRFHSPFIVENYRHLNQ AVSRFHSPFIVENYRHLNQLREQLVLDCSA R F H Y R H 0 1 1 0 0 0 1 0 1 1 0 0 0 2 1 1 0 0 1 1 0 0 11 0 1407.6935 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 780 790 MSH3 DNA mismatch repair protein Msh3 yes no 2;3 5.4766E-05 103.26 By matching By MS/MS By MS/MS 1 3 2 0.78083 0.84442 27.511 6 Median 0.55184 0.55664 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75793 0.80587 6.0445 3 0 Median 1.2385 1.1054 22.674 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21925000 11031000 10894000 1064400 655280 409080 0 0 0 19522000 9687200 9834800 1338300 688660 649680 0 0 0 0 0 0 9066 2080 9424 45016;45017;45018;45019;45020;45021 45018;45019;45020;45021;45022 45020 5 FHSPPDKDEAEAPSQK QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ HSPPDKDEAEAPSQKVTVTKLGQFRVKEED R F H Q K V 2 0 0 2 0 1 2 0 1 0 0 2 0 1 3 2 0 0 0 0 0 0 16 1 1781.822 F5H8D7;P18887;M0QYS5;M0R1U8;M0QZ96;M0R0D2 F5H8D7 118 133 XRCC1 DNA repair protein XRCC1 yes no 2;3;4 4.1906E-05 58.079 By MS/MS By MS/MS By matching 4 5 1 0.6565 0.64554 25.509 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51498 0.58593 19.088 4 0 Median 0.75817 0.72929 11.743 5 0 Median 0.96471 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median 25565000 15990000 9574800 0 0 0 0 0 0 21680000 13882000 7798500 3437900 1817400 1620600 446690 290940 155750 0 0 0 9067 1047 9425 45022;45023;45024;45025;45026;45027;45028;45029;45030;45031 45023;45024;45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035 45025 13 FHSQLMR VYKTDQAQDVKKIEKFHSQLMRLMVAKEAR QDVKKIEKFHSQLMRLMVAKEARNVTMETE K F H M R L 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 0 7 0 917.45416 P49458 P49458 65 71 SRP9 Signal recognition particle 9 kDa protein yes yes 2 1.5361E-09 170.72 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1.1841 1.0154 10.247 10 Median 1.0619 1.0288 NaN 1 0 Median 1.1893 0.98708 2.1508 2 0 Median 1.0845 1.0918 3.1084 2 0 Median 1.2157 0.91555 4.4077 2 0 Median 1.1436 1.1937 8.8327 2 0 Median 1.2662 0.98652 NaN 1 0 Median 84210000 39312000 44898000 32332000 15758000 16574000 25952000 11790000 14162000 13057000 6041700 7015400 7173100 3036900 4136200 4383900 2083700 2300200 1312600 602640 709970 9068 2384 9426 45032;45033;45034;45035;45036;45037;45038;45039;45040;45041 45036;45037;45038;45039;45040;45041;45042;45043;45044 45040 9 FHTEALTALLSDDSK PFKPINTSLYLCDNKFHTEALTALLSDDSK FHTEALTALLSDDSKFGFIVIDGSGALFGT K F H S K F 2 0 0 2 0 0 1 0 1 0 3 1 0 1 0 2 2 0 0 0 0 0 15 0 1646.8152 B7Z7P8;P62495;I3L492;D6RJE8 B7Z7P8 117 131 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 3 6.0231E-07 92.939 By MS/MS By MS/MS By MS/MS 2 1 1 1.1285 0.98474 12.24 4 Median NaN NaN NaN 0 0 Median 1.1285 0.96468 5.3939 2 0 Median 1.2578 1.2236 NaN 1 0 Median 1.0756 0.96759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44402000 20685000 23717000 0 0 0 22541000 10581000 11960000 8289900 3709800 4580000 13571000 6394100 7177200 0 0 0 0 0 0 9069 638 9427 45042;45043;45044;45045 45045;45046;45047;45048;45049 45047 5 FHTITTSYYR KKIKLQIWDTAGQERFHTITTSYYRGAMGI AGQERFHTITTSYYRGAMGIMLVYDITNGK R F H Y R G 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 3 0 2 0 0 0 10 0 1287.6248 P61026 P61026 71 80 RAB10 Ras-related protein Rab-10 yes yes 2;3 9.8884E-05 82.287 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 2 1.3448 1.2117 15.841 11 Median 1.2753 1.2117 7.0432 3 0 Median 1.4093 1.1918 19.274 3 0 Median 1.4374 1.3792 NaN 1 0 Median 1.5535 1.2849 20.509 2 0 Median NaN NaN NaN 0 0 Median 1.381 1.1212 25.331 2 1 Median 98012000 42615000 55397000 72955000 32243000 40712000 13868000 5942100 7925800 6142800 2508500 3634300 3120600 1084800 2035800 0 0 0 1925700 835950 1089800 9070 2540 9428 45046;45047;45048;45049;45050;45051;45052;45053;45054;45055;45056 45050;45051;45052;45053;45054;45055;45056;45057;45058;45059;45060 45050 11 FHVDISLTDFIQK IHQLKVNGEDPYPHKFHVDISLTDFIQKYS HKFHVDISLTDFIQKYSHLQPGDHLTDITL K F H Q K Y 0 0 0 2 0 1 0 0 1 2 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1561.814 Q15046;H3BVA8 Q15046 99 111 KARS Lysine--tRNA ligase yes no 2 3.8936E-09 129.7 By MS/MS 2 1.7453 1.4791 10.018 2 Median NaN NaN NaN 0 0 Median 1.7453 1.4791 10.018 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10688000 3741300 6946900 0 0 0 10688000 3741300 6946900 0 0 0 0 0 0 0 0 0 0 0 0 9071 2919 9429 45057;45058 45061;45062 45062 2 FHVEEEGK ANPAAGSVILLENLRFHVEEEGKGKDASGN ILLENLRFHVEEEGKGKDASGNKVKAEPAK R F H G K G 0 0 0 0 0 0 3 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 973.45051 P00558;P07205 P00558 124 131 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2 0.0022926 111.82 By matching By MS/MS By MS/MS 2 3 2 1.0821 1.119 10.027 7 Median 1.0895 1.073 1.2465 2 0 Median 1.3736 1.1702 16.537 3 0 Median 1.0725 1.1403 2.6715 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24134000 10372000 13762000 1373400 668230 705150 21335000 9034800 12300000 1425400 669080 756280 0 0 0 0 0 0 0 0 0 9072 1824 9430 45059;45060;45061;45062;45063;45064;45065 45063;45064;45065;45066;45067;45068 45067 6 FHWEQDQIAHMK YVKTRLELEENQMKRFHWEQDQIAHMKNYI MKRFHWEQDQIAHMKNYIARFGHGSAKLAR R F H M K N 1 0 0 1 0 2 1 0 2 1 0 1 1 1 0 0 0 1 0 0 0 0 12 0 1568.7194 Q9UG63 Q9UG63 328 339 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 3 0.0010433 45.077 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1912 1.1056 23.858 4 Median 1.4307 1.3426 NaN 1 0 Median 1.0159 0.86759 NaN 1 0 Median 1.3267 1.3416 NaN 1 0 Median 1.0695 0.91112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30958000 13708000 17249000 12104000 5335700 6768300 4055800 1828900 2226900 11919000 5164900 6754300 2878700 1378800 1499900 0 0 0 0 0 0 9073 4262 9431 45066;45067;45068;45069 45069;45070;45071 45071 3 FIADGGPEVETIALQNNR PEDEEVKNLAEKLARFIADGGPEVETIALQ DGGPEVETIALQNNRENQAFSFLYEPNSQG R F I N R E 2 1 2 1 0 1 2 2 0 2 1 0 0 1 1 0 1 0 0 1 0 0 18 0 1942.9749 Q8IWZ8 Q8IWZ8 273 290 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 2 8.5844E-06 64.55 By MS/MS 1 0.43914 0.45371 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43914 0.45371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6407900 4728500 1679300 0 0 0 0 0 0 6407900 4728500 1679300 0 0 0 0 0 0 0 0 0 9074 3330 9432 45070 45072 45072 1 FIADQLDHLNVTK EAIKAAATSKFPPHRFIADQLDHLNVTKKW HRFIADQLDHLNVTKKWS____________ R F I T K K 1 0 1 2 0 1 0 0 1 1 2 1 0 1 0 0 1 0 0 1 0 0 13 0 1512.7936 Q9BQC6 Q9BQC6 87 99 MRPL57 Ribosomal protein 63, mitochondrial yes yes 2;3 0.00058618 73.781 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.0691 0.93781 23.407 8 Median 0.8621 0.78938 12.573 3 2 Median 1.576 1.2996 14.743 2 0 Median 1.1376 1.0914 22.506 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0998 0.90468 NaN 1 0 Median 58422000 27387000 31035000 22113000 11293000 10820000 15000000 5706700 9293500 17313000 7913300 9399500 0 0 0 0 0 0 3995800 2473600 1522200 9075 3788 9433 45071;45072;45073;45074;45075;45076;45077;45078 45073;45074;45075;45076;45077;45078;45079;45080;45081 45081 9 FIADQLDHLNVTKK EAIKAAATSKFPPHRFIADQLDHLNVTKKW RFIADQLDHLNVTKKWS_____________ R F I K K W 1 0 1 2 0 1 0 0 1 1 2 2 0 1 0 0 1 0 0 1 0 0 14 1 1640.8886 Q9BQC6 Q9BQC6 87 100 MRPL57 Ribosomal protein 63, mitochondrial yes yes 3 0.0031362 45.992 By MS/MS 1 1.5589 1.3514 NaN 1 Median NaN NaN NaN 0 0 Median 1.5589 1.3514 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6141900 2542100 3599800 0 0 0 6141900 2542100 3599800 0 0 0 0 0 0 0 0 0 0 0 0 9076 3788 9434 45079 45082 45082 1 FIAGTGCLVR VGTNMDNRLPLENGRFIAGTGCLVRAVEMA LENGRFIAGTGCLVRAVEMAAQRQADIIGK R F I V R A 1 1 0 0 1 0 0 2 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1092.575 A6NDG6 A6NDG6 211 220 PGP Phosphoglycolate phosphatase yes yes 2 0.00038325 79.906 By MS/MS 2 1.0147 0.85443 21.564 2 Median NaN NaN NaN 0 0 Median 1.0147 0.85443 21.564 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16017000 7813700 8203000 0 0 0 16017000 7813700 8203000 0 0 0 0 0 0 0 0 0 0 0 0 9077 506 9435 45080;45081 45083;45084 45083 2 FIAHVPVPSQQEIEEALVR EEGSQEKGGDDSQQKFIAHVPVPSQQEIEE VPVPSQQEIEEALVRRKKMELLQKYASETL K F I V R R 2 1 0 0 0 2 3 0 1 2 1 0 0 1 2 1 0 0 0 3 0 0 19 0 2161.1532 Q9ULR0 Q9ULR0 239 257 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 3 6.1983E-07 56.215 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.78656 0.8252 19.122 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60837 0.61115 4.0074 2 0 Median 0.99679 0.8562 NaN 1 0 Median 0.78656 0.8252 NaN 1 0 Median 1.0353 0.90226 NaN 1 0 Median 5047700 3002100 2045600 0 0 0 0 0 0 3181300 2087800 1093500 469180 240620 228550 814750 397210 417540 582530 276520 306010 9078 4327 9436 45082;45083;45084;45085;45086 45085;45086 45085 2 FIALANVGNPEK RNHIILQENAQHATRFIALANVGNPEKKKY ATRFIALANVGNPEKKKYLYAFSIVPMKLM R F I E K K 2 0 2 0 0 0 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1271.6874 Q69YN2 Q69YN2 223 234 CWF19L1 CWF19-like protein 1 yes yes 2 0.00060398 70.1 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.02 0.91157 5.04 4 Median 1.0032 0.94858 NaN 1 0 Median 1.037 0.89392 NaN 1 0 Median 0.85633 0.84598 NaN 1 0 Median 1.0853 0.92957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20215000 10423000 9791900 8870700 4906100 3964600 2643400 1299300 1344100 7413500 3660500 3753000 1287600 557480 730130 0 0 0 0 0 0 9079 3129 9437 45087;45088;45089;45090 45087;45088;45089 45088 3 FIASTGMDR HSGLTTGVAFGHHAKFIASTGMDRSLKFYS FGHHAKFIASTGMDRSLKFYSL________ K F I D R S 1 1 0 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 9 0 996.46987 Q9UMS4;H0YGZ5 Q9UMS4 489 497 PRPF19 Pre-mRNA-processing factor 19 yes no 2 0.00011364 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 2 4 6 1.1741 1.072 21.356 22 Median 1.3833 1.3168 13.361 3 0 Plateau 1.2869 1.1008 4.3995 2 0 Median 1.1426 1.1469 12.633 5 0 Median 1.2215 1.0026 6.7147 2 0 Median 1.4987 1.474 23.734 4 0 Median 1.0457 0.84204 15.954 6 1 Median 173670000 77163000 96510000 18214000 7280700 10933000 19550000 8685400 10864000 63842000 31040000 32802000 43702000 18612000 25091000 21329000 8524200 12805000 7037000 3020900 4016100 9080 4334 9438;9439 45091;45092;45093;45094;45095;45096;45097;45098;45099;45100;45101;45102;45103;45104;45105;45106;45107;45108;45109;45110;45111;45112 45090;45091;45092;45093;45094;45095;45096;45097;45098;45099;45100;45101;45102;45103;45104;45105;45106 45097 1926 17 FIATLQYIVGR TADHDDRVVPLHSLKFIATLQYIVGRSRKQ HSLKFIATLQYIVGRSRKQSNPLLIHVDTK K F I G R S 1 1 0 0 0 1 0 1 0 2 1 0 0 1 0 0 1 0 1 1 0 0 11 0 1279.7289 A0A499FJL1;P48147 A0A499FJL1 586 596 PREP Prolyl endopeptidase yes no 2 0.00042523 69.954 By MS/MS By MS/MS 1 2 1.0187 0.87929 1.5204 3 Median 0.90232 0.86575 NaN 1 0 Median 1.0243 0.88586 1.0525 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9158000 4580600 4577400 4671200 2400400 2270800 4486800 2180200 2306600 0 0 0 0 0 0 0 0 0 0 0 0 9081 478 9440 45113;45114;45115 45107;45108;45109 45108 3 FIAVGYVDDTQFVR YFFTSVSRPGRGEPRFIAVGYVDDTQFVRF RFIAVGYVDDTQFVRFDSDAASQRMEPRAP R F I V R F 1 1 0 2 0 1 0 1 0 1 0 0 0 2 0 0 1 0 1 3 0 0 14 0 1628.8199 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0 P04439 46 59 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain no no 2 0.00016414 79.693 By MS/MS By MS/MS By matching 1 1 1 1.1396 0.98543 24.914 3 Plateau NaN NaN NaN 0 0 Median 1.1396 0.98543 NaN 1 0 Median 0.99451 1.0555 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66465 0.66516 NaN 1 0 Median 4747800 1998000 2749700 0 0 0 3378500 1412700 1965800 1237300 537110 700150 0 0 0 0 0 0 132040 48270 83773 9082 348 9441 45116;45117;45118 45110;45111;45112 45112 3 FICTTGK GEGEGDATYGKLTLKFICTTGKLPVPWPTL TYGKLTLKFICTTGKLPVPWPTLVTTFSYG K F I G K L 0 0 0 0 1 0 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 7 0 825.40547 CON__Q9U6Y5 CON__Q9U6Y5 46 52 yes yes 2 0.0024329 116.11 By matching By MS/MS By matching 1 4 1 1.3128 1.1589 12.778 6 Median 1.2171 1.1963 NaN 1 0 Median 1.3128 1.1132 12.058 4 0 Median 1.3725 1.4351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41381000 18063000 23318000 596950 252920 344030 40457000 17670000 22787000 327530 140930 186600 0 0 0 0 0 0 0 0 0 + 9083 795 9442 45119;45120;45121;45122;45123;45124 45113;45114;45115;45116;45117 45115 5 FICTTSAIQNR AKAISEQTGKELLYKFICTTSAIQNRFKYA LLYKFICTTSAIQNRFKYARVTPDTDWARL K F I N R F 1 1 1 0 1 1 0 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 11 0 1309.6449 P53396;K7ESG8 P53396 18 28 ACLY ATP-citrate synthase yes no 2 0.00039726 99.802 By MS/MS 1 1.2357 1.0322 NaN 1 Median NaN NaN NaN 0 0 Median 1.2357 1.0322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11928000 4943500 6984000 0 0 0 11928000 4943500 6984000 0 0 0 0 0 0 0 0 0 0 0 0 9084 2467 9443 45125 45118 45118 1 FIDDVVSAVLR HSVAESLLQVGVTQRFIDDVVSAVLRASYG VTQRFIDDVVSAVLRASYGQSAAMPAFAGA R F I L R A 1 1 0 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 3 0 0 11 0 1232.6765 Q8NBM8;E7EVZ5 Q8NBM8 204 214 PCYOX1L Prenylcysteine oxidase-like yes no 2 0.0020665 55.549 By MS/MS By matching By matching 1 1 1 0.97407 0.93427 35.611 3 Median 0.97407 0.93427 NaN 1 0 Median 0.76552 0.735 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7132 1.4811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13624000 6239600 7384600 7645200 3651600 3993600 5016400 2256600 2759800 0 0 0 962620 331410 631210 0 0 0 0 0 0 9085 3407 9444 45126;45127;45128 45119 45119 1 FIDEQQILHWQHYSR YEHFRKELVNAQCAKFIDEQQILHWQHYSR FIDEQQILHWQHYSRKRMRLQQALAEQQQQ K F I S R K 0 1 0 1 0 3 1 0 2 2 1 0 0 1 0 1 0 1 1 0 0 0 15 0 1998.97 Q9Y3C7;I3L2J1 Q9Y3C7 96 110 MED31 Mediator of RNA polymerase II transcription subunit 31 yes no 3;4 0.00023457 45.33 By MS/MS 2 0.85113 0.86301 10.883 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85113 0.86301 10.883 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12088000 6513100 5575000 0 0 0 0 0 0 12088000 6513100 5575000 0 0 0 0 0 0 0 0 0 9086 4419 9445 45129;45130 45120;45121 45120 1 FIDFFKR ______________________________ TASEIRQRFIDFFKRNEHTYVHSSATIPLD R F I K R N 0 1 0 1 0 0 0 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 7 1 971.52289 P49588 P49588 14 20 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.003164 114.54 By MS/MS 1 1.1651 1.2138 NaN 1 Median 1.1651 1.2138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10774000 4920200 5853700 10774000 4920200 5853700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9087 2385 9446 45131 45122;45123 45123 2 FIDPLAKEEENVGIDITEPLYMQR NVAACKENFQRFLQRFIDPLAKEEENVGID ENVGIDITEPLYMQRLGEINVIGEPFLNVN R F I Q R L 1 1 1 2 0 1 4 1 0 3 2 1 1 1 2 0 1 0 1 1 0 0 24 1 2819.4051 A0A3B3IU45;P33991;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 123 146 MCM4 DNA replication licensing factor MCM4 yes no 3 6.6236E-08 44.105 By MS/MS By MS/MS By matching 2 2 1 0.60074 0.62313 10.592 5 Median 0.57356 0.589 7.9647 2 0 Median 0.72069 0.69542 8.9651 2 0 Median 0.52567 0.60256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7036800 4015200 3021700 2786000 1703900 1082100 3883000 2057000 1826000 367780 254210 113570 0 0 0 0 0 0 0 0 0 9088 441 9447 45132;45133;45134;45135;45136 45124;45125;45126;45127 45124 4 FIDQVVEK NTSKCPVTIPEDQKKFIDQVVEKIEDLLQS IPEDQKKFIDQVVEKIEDLLQSEENKNLDL K F I E K I 0 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 976.52295 A0A494C1G3;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C0Q2;A0A494C1N1;A0A494C0K5;A0A494C0W0;O95453;A0A494C002;A0A494C156;A0A494C0Q6;F5H1Z4;H3BRK1 A0A494C1G3 82 89 PARN Poly(A)-specific ribonuclease PARN yes no 2 0.0034121 97.798 By MS/MS 1 1.0455 1.0596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0455 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11331000 4614600 6716700 0 0 0 0 0 0 11331000 4614600 6716700 0 0 0 0 0 0 0 0 0 9089 452 9448 45137 45128;45129 45129 2 FIDTSQFILNR LDSRAEACFVNCVERFIDTSQFILNRLEQT CVERFIDTSQFILNRLEQTQKSKPVFSESL R F I N R L 0 1 1 1 0 1 0 0 0 2 1 0 0 2 0 1 1 0 0 0 0 0 11 0 1352.7089 O60220 O60220 70 80 TIMM8A Mitochondrial import inner membrane translocase subunit Tim8 A yes yes 2 9.1196E-05 149.94 By MS/MS By MS/MS 1 1 1.0316 1.0232 4.5621 2 Median 1.0179 0.99067 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0456 1.0567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36017000 17081000 18936000 7183800 2669100 4514700 0 0 0 28833000 14412000 14421000 0 0 0 0 0 0 0 0 0 9090 1604 9449 45138;45139 45130;45131;45132 45132 3 FIDTTLAITSR LDSRTENCLSSCVDRFIDTTLAITSRFAQI CVDRFIDTTLAITSRFAQIVQKGGQ_____ R F I S R F 1 1 0 1 0 0 0 0 0 2 1 0 0 1 0 1 3 0 0 0 0 0 11 0 1236.6714 G3XAN8;Q9Y5J9 G3XAN8 78 88 TIMM8B Mitochondrial import inner membrane translocase subunit Tim8 B yes no 2 0.00013836 87.913 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.0794 1.0497 18.342 7 Median 1.0794 1.0497 NaN 1 0 Median 1.7385 1.4391 5.8231 2 1 Median 0.9371 0.94369 2.4188 2 0 Median NaN NaN NaN 0 0 Median 1.0094 1.0255 NaN 1 0 Median 1.5315 1.1696 NaN 1 0 Median 21898000 10470000 11428000 9303400 4590500 4712900 4167100 1550700 2616400 6499700 3446100 3053600 0 0 0 1126200 549300 576920 801310 333140 468160 9091 1127 9450 45140;45141;45142;45143;45144;45145;45146 45133;45134;45135;45136;45137;45138;45139;45140;45141;45142 45142 10 FIDTTSK LVQTKRRALEKIDLKFIDTTSKFGHGRFQT ALEKIDLKFIDTTSKFGHGRFQTMEEKKAF K F I S K F 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 0 0 7 0 810.41233 P39023;G5E9G0;Q92901 P39023 367 373 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 2 0.026222 53.351 By MS/MS 1 1.1998 1.0282 NaN 1 Median NaN NaN NaN 0 0 Median 1.1998 1.0282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4422200 1943200 2479000 0 0 0 4422200 1943200 2479000 0 0 0 0 0 0 0 0 0 0 0 0 9092 2281 9451 45147 45143 45143 1 FIDVGGYK LNILLQTRSPEILVKFIDVGGYKLLNNWLT SPEILVKFIDVGGYKLLNNWLTYSKTTNNI K F I Y K L 0 0 0 1 0 0 0 2 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 897.45962 Q96QC0 Q96QC0 66 73 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 0.011256 58.917 By MS/MS By MS/MS By matching By matching 4 1 2 1 0.98153 1.0133 31.278 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94355 1.0147 11.618 3 1 Median 1.1847 0.9952 NaN 1 0 Median 1.0121 1.0572 6.0073 2 0 Median 0.55377 0.469 NaN 1 0 Median 16178000 7980500 8197900 0 0 0 0 0 0 8506700 4015500 4491200 1418000 666980 751030 5209200 2742400 2466900 1044500 555650 488860 9093 3718 9452 45148;45149;45150;45151;45152;45153;45154;45155 45144;45145;45146;45147 45146 4 FIEAAQR HYKVCYARVLDYRRKFIEAAQRYNELSYKT RVLDYRRKFIEAAQRYNELSYKTIVHESER K F I Q R Y 2 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 833.43955 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 201 207 COPS4 COP9 signalosome complex subunit 4 yes no 2 0.044246 43 By MS/MS By matching 1 1 1.2058 1.1441 16.386 2 Median NaN NaN NaN 0 0 Median 1.1841 1.019 NaN 1 0 Median 1.2278 1.2847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3372600 1518200 1854400 0 0 0 2430200 1188900 1241300 942420 329310 613110 0 0 0 0 0 0 0 0 0 9094 813 9453 45156;45157 45148 45148 1 FIEAGQYNNHLYGTSVQSVR VTSREQMEKDIQEHKFIEAGQYNNHLYGTS QYNNHLYGTSVQSVREVAEKGKHCILDVSG K F I V R E 1 1 2 0 0 2 1 2 1 1 1 0 0 1 0 2 1 0 2 2 0 0 20 0 2282.108 Q12959;A0A590UK81;A0A0C4DFT3;A0A590UKA8;A0A590UJC5;A0A590UJR5;A0A590UJ08;A0A590UJ81;A0A590UJ18;A0A590UJ68;A0A590UJS9;A0A590UJX2;A0A590UK48;A0A590UJR4;A0A590UJ29;A0A590UJD9;C9JUA9 Q12959 778 797 DLG1 Disks large homolog 1 yes no 3 9.0789E-12 97.618 By MS/MS By MS/MS By MS/MS 1 1 2 1.1569 1.0975 17.074 4 Median 1.3134 1.267 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1337 1.2003 NaN 1 0 Median 1.1015 0.9357 9.8924 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35661000 17492000 18168000 8322000 4362300 3959700 0 0 0 21437000 9769400 11667000 5901900 3360700 2541200 0 0 0 0 0 0 9095 230 9454 45158;45159;45160;45161 45149;45150;45151;45152;45153 45151 5 FIEDELQIPVK RAFKELPVNAQNYVRFIEDELQIPVKWIGV NYVRFIEDELQIPVKWIGVGKSRESMIQLF R F I V K W 0 0 0 1 0 1 2 0 0 2 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1329.718 P30520 P30520 431 441 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.0085156 40.352 By MS/MS By matching By matching By matching 1 1 1 1 1.0371 0.9502 19.948 4 Median 1 0.94236 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2776 1.2792 NaN 1 0 Median 1.0755 0.9581 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84388 0.79014 NaN 1 0 Median 8316400 3680300 4636200 5491800 2502200 2989600 0 0 0 2219600 862280 1357300 248860 100310 148550 0 0 0 356190 215510 140680 9096 2195 9455 45162;45163;45164;45165 45154 45154 1 FIEEHATK VKFEGGDRDLEHLSKFIEEHATKLSRTKEE DLEHLSKFIEEHATKLSRTKEEL_______ K F I T K L 1 0 0 0 0 0 2 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 8 0 973.4869 P13667;A0A499FI48 P13667 630 637 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.0054254 75.854 By matching By MS/MS By matching 2 2 1 1.0917 1.0569 8.2881 5 Median 1.0743 1.0518 0.68247 2 0 Median 1.4067 1.2168 3.0771 2 0 Median 0.97988 1.0432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11615000 4815400 6799800 2349500 1090900 1258600 7656700 2895800 4760900 1608900 828750 780180 0 0 0 0 0 0 0 0 0 9097 1993 9456 45166;45167;45168;45169;45170 45155;45156;45157 45156 3 FIEFEDSQEQEKK QYEREKALRKHAEEKFIEFEDSQEQEKKDL EKFIEFEDSQEQEKKDLQTRVESLESQTRQ K F I K K D 0 0 0 1 0 2 4 0 0 1 0 2 0 2 0 1 0 0 0 0 0 0 13 1 1655.7679 A0A087X2D8;O60271 A0A087X2D8 103 115 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 2.6792E-06 117.67 By MS/MS By MS/MS By matching By matching By matching By matching 4 2 1 1 1 1 0.96115 0.98751 28.584 10 Median 1.0775 1.11 25.621 4 0 Median 1.4198 1.3544 19.451 2 0 Median 0.80904 0.87522 NaN 1 0 Median 0.94242 0.82651 NaN 1 0 Median 0.83266 0.91303 NaN 1 0 Median 0.66798 0.59885 NaN 1 0 Median 115650000 61239000 54411000 26457000 12647000 13810000 19244000 9593200 9650500 28591000 15919000 12672000 1375200 652280 722930 36968000 20807000 16161000 3014600 1620800 1393800 9098 134 9457 45171;45172;45173;45174;45175;45176;45177;45178;45179;45180 45158;45159;45160;45161 45159 3 FIEFNAK QVLELKPMEQKDFIKFIEFNAKKMWPQYCQ MEQKDFIKFIEFNAKKMWPQYCQHDNDTTQ K F I A K K 1 0 1 0 0 0 1 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 7 0 867.44905 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V5N1 Q8WXH0 4401 4407 SYNE2 Nesprin-2 yes no 2 0.046807 54.525 By MS/MS 1 0.87562 0.94391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87562 0.94391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4397200 2286200 2111100 0 0 0 0 0 0 4397200 2286200 2111100 0 0 0 0 0 0 0 0 0 9099 3521 9458 45181 45162 45162 1 FIEGISEK VDCCKTLDQAKAVLKFIEGISEKTLRSTVA QAKAVLKFIEGISEKTLRSTVALTAARGRG K F I E K T 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 1 0 0 0 0 0 0 8 0 921.48075 Q9H0A0;A0A087WV29 Q9H0A0 267 274 NAT10 N-acetyltransferase 10 yes no 2 0.0055363 75.213 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 0.98557 0.93675 47.208 8 Median NaN NaN NaN 0 0 Median 1.2843 1.0908 NaN 1 1 Median 1.0093 1.0871 76.994 3 0 Median 0.92536 0.80392 26.083 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61436000 30730000 30706000 0 0 0 6109500 2459200 3650300 17405000 9905200 7499500 37922000 18366000 19556000 0 0 0 0 0 0 9100 3921 9459 45182;45183;45184;45185;45186;45187;45188;45189;45190 45163;45164;45165;45166;45167;45168 45163 6 FIEIAAR KLNTLLQRAPQCLGKFIEIAARKKRNFILD RAPQCLGKFIEIAARKKRNFILDQTNVSAA K F I A R K 2 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 818.46504 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;A0A1W2PPE9 Q00839 566 572 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 1;2 0.0022261 118.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 8 8 11 8 1.1661 1.0727 21.929 42 Median 1.0538 1.013 48.44 3 1 Median 1.322 1.1272 14.792 4 0 Median 1.0079 1.0809 31.29 8 0 Median 1.4608 1.2236 9.961 8 0 Median 1.0831 1.0861 11.746 11 0 Median 1.2657 1.0396 6.6149 8 0 Median 1210500000 559340000 651190000 43277000 19912000 23364000 115950000 50840000 65115000 192000000 93834000 98164000 60096000 25417000 34678000 603250000 281880000 321370000 195960000 87452000 108500000 9101 2680 9460 45191;45192;45193;45194;45195;45196;45197;45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213;45214;45215;45216;45217;45218;45219;45220;45221;45222;45223;45224;45225;45226;45227;45228;45229;45230;45231;45232 45169;45170;45171;45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182;45183;45184;45185;45186;45187;45188;45189;45190;45191;45192;45193;45194;45195;45196;45197;45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211 45175 43 FIFDVGTR LDPATEARYRREGARFIFDVGTRLGLHYDT YRREGARFIFDVGTRLGLHYDTLATGIIYF R F I T R L 0 1 0 1 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 1 0 0 8 0 953.49707 O75909;G3V2Q3;G3V5E1;G3V235 O75909 56 63 CCNK Cyclin-K yes no 2 0.0035475 89.55 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.3102 1.3125 10.867 5 Median 1.2931 1.3125 NaN 1 0 Median 1.5887 1.3877 NaN 1 0 Median 1.1624 1.2051 NaN 1 0 Median 1.3102 1.1327 NaN 1 0 Median 1.4012 1.4875 NaN 1 0 Median NaN NaN NaN 0 0 Median 9047400 4210300 4837100 1248100 494420 753690 787960 274000 513960 6082600 3053500 3029100 185530 85574 99958 743200 302790 440420 0 0 0 9102 1704 9461 45233;45234;45235;45236;45237 45212;45213 45213 2 FIFMLSTR REEAIEAFNAPNSSKFIFMLSTRAGGLGIN NAPNSSKFIFMLSTRAGGLGINLASADVVI K F I T R A 0 1 0 0 0 0 0 0 0 1 1 0 1 2 0 1 1 0 0 0 0 0 8 0 1013.5368 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 556 563 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.012659 54.549 By MS/MS By MS/MS 1 1 1.1087 1.1925 6.7513 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1517 1.2509 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0673 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median 3201600 1456700 1744900 0 0 0 0 0 0 1495700 678390 817260 0 0 0 1706000 778330 927640 0 0 0 9103 167;643 9462 45238;45239 45214;45215;45216 45216 3 FIFNYVYHPK KLYSLLKHLKLCHSRFIFNYVYHPKGARID LCHSRFIFNYVYHPKGARIDVSINECYDGS R F I P K G 0 0 1 0 0 0 0 0 1 1 0 1 0 2 1 0 0 0 2 1 0 0 10 0 1326.6761 J3QQW9;Q15022 J3QQW9 451 460 SUZ12 Polycomb protein SUZ12 yes no 3 0.036698 20.304 By MS/MS By MS/MS 1 3 0.8837 0.90258 8.1161 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79139 0.871 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96921 0.93531 9.3354 3 0 Median NaN NaN NaN 0 0 Median 8363200 4233000 4130300 0 0 0 0 0 0 3824300 2086100 1738200 0 0 0 4538900 2146900 2392100 0 0 0 9104 1344 9463 45240;45241;45242;45243 45217;45218 45218 2 FIFQSER SVWGFLREHGPLPQKFIFQSERGRFIRDFS EHGPLPQKFIFQSERGRFIRDFSREGGGEG K F I E R G 0 1 0 0 0 1 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 7 0 925.46577 Q6P9B9 Q6P9B9 960 966 INTS5 Integrator complex subunit 5 yes yes 2 0.040285 57.559 By MS/MS 1 1.2863 1.3773 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2863 1.3773 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2476400 924360 1552100 0 0 0 0 0 0 2476400 924360 1552100 0 0 0 0 0 0 0 0 0 9105 3166 9464 45244 45219 45219 1 FIGATANFSR TDDQEEEPLERDFDRFIGATANFSRFTLWG RDFDRFIGATANFSRFTLWGLETIPGPDAK R F I S R F 2 1 1 0 0 0 0 1 0 1 0 0 0 2 0 1 1 0 0 0 0 0 10 0 1082.5509 E9PN81;Q8TDP1 E9PN81 119 128 RNASEH2C Ribonuclease H2 subunit C yes no 2 0.00040727 76.827 By matching By matching By matching By MS/MS By matching 1 2 1 1 1 1.1452 0.9863 5.555 6 Median 1.0092 0.97276 NaN 1 0 Median 1.1261 0.94327 8.2619 2 0 Median 1.0867 1.0441 NaN 1 0 Median 1.2228 1.0145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2241 0.95995 NaN 1 0 Median 53009000 24792000 28217000 17324000 8864700 8459300 19495000 8580400 10915000 11055000 5193100 5862000 4226000 1755900 2470100 0 0 0 908310 397720 510590 9106 972 9465 45245;45246;45247;45248;45249;45250 45220;45221 45221 2 FIGELFK EARDIARRRSLGNIKFIGELFKLKMLTEAI RRSLGNIKFIGELFKLKMLTEAIMHDCVVK K F I F K L 0 0 0 0 0 0 1 1 0 1 1 1 0 2 0 0 0 0 0 0 0 0 7 0 852.47454 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;A0A0U1RQK7;A0A0A0MSA7;O43432 E7EX73 738 744 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 no no 2 0.018479 62.714 By MS/MS By matching By matching By matching By matching 1 1 2 2 1 1.2688 1.1459 38.213 7 Median 1.1881 1.1494 NaN 1 0 Median 1.2688 1.1459 NaN 1 0 Median 1.2224 1.2926 31.197 2 0 Median 1.2486 1.0982 1.8108 2 0 Median 2.8461 2.9985 NaN 1 0 Median NaN NaN NaN 0 0 Median 16522000 6901800 9619900 10936000 4920800 6015400 340830 157680 183150 1346200 614040 732110 877920 395060 482860 3020600 814210 2206400 0 0 0 9107 894;300 9466 45251;45252;45253;45254;45255;45256;45257 45222 45222 1 FIGIPNQFK PFEEIRAKYYREMKRFIGIPNQFKGVGEAG YREMKRFIGIPNQFKGVGEAGDESIFSIMI R F I F K G 0 0 1 0 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 0 0 0 9 0 1062.5862 Q8NCM8;A0A3B3ISP9 Q8NCM8 806 814 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.00082888 95.62 By MS/MS By matching 1 1 0.69576 0.73005 6.7827 2 Median 0.697 0.69586 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69453 0.76591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7970700 4312000 3658700 6894000 3666600 3227500 0 0 0 1076700 645420 431290 0 0 0 0 0 0 0 0 0 9108 3418 9467 45258;45259 45223;45224 45224 2 FIGPSPEVVR ERADFAQACQDAGVRFIGPSPEVVRKMGDK DAGVRFIGPSPEVVRKMGDKVEARAIAIAA R F I V R K 0 1 0 0 0 0 1 1 0 1 0 0 0 1 2 1 0 0 0 2 0 0 10 0 1099.6026 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 138 147 PC Pyruvate carboxylase, mitochondrial yes no 2 0.010722 62.546 By MS/MS By MS/MS 1 1 0.89143 0.7532 NaN 1 Median NaN NaN NaN 0 0 Median 0.89143 0.7532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4718100 2544900 2173200 0 0 0 4718100 2544900 2173200 0 0 0 0 0 0 0 0 0 0 0 0 9109 1967 9468 45260;45261 45225;45226 45225 2 FIGSPPGYVGHEEGGQLTK RLDMSEFQERHEVAKFIGSPPGYVGHEEGG PPGYVGHEEGGQLTKKLKQCPNAVVLFDEV K F I T K K 0 0 0 0 0 1 2 5 1 1 1 1 0 1 2 1 1 0 1 1 0 0 19 0 1971.969 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 428 446 CLPB Caseinolytic peptidase B protein homolog no no 3 5.2168E-10 88.283 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1225 0.9589 14.499 6 Median 0.94778 0.8796 NaN 1 0 Median 1.3631 1.1554 1.1852 2 0 Median 0.84906 0.8204 NaN 1 0 Median 1.1225 0.9589 8.0852 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100370000 50771000 49599000 44467000 22391000 22076000 12486000 5757800 6728000 32583000 17237000 15346000 10834000 5385500 5449000 0 0 0 0 0 0 9110 1181 9469 45262;45263;45264;45265;45266;45267 45227;45228;45229;45230;45231;45232 45229 5 FIHDQTSPNPK EAVVVVCPMETIKVKFIHDQTSPNPKYRGF IKVKFIHDQTSPNPKYRGFFHGVREIVREQ K F I P K Y 0 0 1 1 0 1 0 0 1 1 0 1 0 1 2 1 1 0 0 0 0 0 11 0 1282.6306 P53007;B4DP62 P53007 150 160 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 3 0.052274 23.376 By MS/MS By MS/MS By matching 1 1 1 1.1231 0.92029 21.327 3 Median 0.67765 0.66378 NaN 1 1 Median 1.1695 0.99106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1231 0.92029 NaN 1 0 Median 3748400 2092200 1656200 2363000 1486500 876490 1191000 534310 656690 0 0 0 0 0 0 0 0 0 194440 71404 123030 9111 2464 9470 45268;45269;45270 45233;45234 45234 2 FIHGLIK ENYLEENLLYAPSLRFIHGLIKQFSENIYE LLYAPSLRFIHGLIKQFSENIYEAFLVGKP R F I I K Q 0 0 0 0 0 0 0 1 1 2 1 1 0 1 0 0 0 0 0 0 0 0 7 0 826.50651 H7BXY3;Q7L2E3 H7BXY3 946 952 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.029387 65.897 By MS/MS 1 1.6701 1.4354 NaN 1 Median NaN NaN NaN 0 0 Median 1.6701 1.4354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4138400 1636400 2502000 0 0 0 4138400 1636400 2502000 0 0 0 0 0 0 0 0 0 0 0 0 9112 1244 9471 45271 45235 45235 1 FIHQQPQSSSPVYGSSAK TILDPLDQWQPSSSRFIHQQPQSSSPVYGS QQPQSSSPVYGSSAKTSSVSNPQDSVGSPC R F I A K T 1 0 0 0 0 3 0 1 1 1 0 1 0 1 2 5 0 0 1 1 0 0 18 0 1946.9486 F5H836;F5GZ78;A0A1B0GU60;A0A1B0GTU4;P49023 F5H836 77 94 PXN Paxillin yes no 3 1.5239E-06 61.648 By MS/MS By MS/MS 2 1 1.1765 0.99701 3.5024 3 Plateau 1.0749 1.0268 4.3289 2 2 Median 1.1765 0.99701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16600000 7583900 9016600 11247000 5374300 5872600 5353700 2209600 3144000 0 0 0 0 0 0 0 0 0 0 0 0 9113 320 9472 45272;45273;45274 45236;45237;45238;45239 45239 4 FIHVSHLNANIK PQAIAQLSKEAGVEKFIHVSHLNANIKSSS VEKFIHVSHLNANIKSSSRYLRNKAVGEKV K F I I K S 1 0 2 0 0 0 0 0 2 2 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1391.7674 A0A3B3ISG8;Q16795 A0A3B3ISG8 164 175 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2;3 3.4624E-15 147.73 By MS/MS By MS/MS By MS/MS 2 2 2 1.0359 0.99643 22.003 5 Median 1.0374 0.94153 25.143 2 1 Median 1.5477 1.3014 NaN 1 1 Median 0.92216 0.88718 16.422 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87733000 40183000 47550000 57716000 26009000 31707000 10501000 3617600 6883800 19516000 10556000 8959800 0 0 0 0 0 0 0 0 0 9114 424 9473 45275;45276;45277;45278;45279;45280 45240;45241;45242;45243;45244;45245 45241 6 FIIDNTK QKNDLNPMFLDQVAKFIIDNTKGQMLGLGN MFLDQVAKFIIDNTKGQMLGLGNPSFSDPF K F I T K G 0 0 1 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 7 0 849.45962 Q9Y263;E5RIM3;H0YBW4 Q9Y263 450 456 PLAA Phospholipase A-2-activating protein yes no 2 0.0046223 99.919 By MS/MS By MS/MS By MS/MS 3 1 1 1.1609 0.91874 26.7 5 Linear 0.94936 0.91874 23.121 3 0 Plateau 1.2284 1.0749 NaN 1 0 Median 0.94863 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44390000 20878000 23512000 13488000 6939500 6548500 22402000 9463100 12938000 8500100 4475300 4024900 0 0 0 0 0 0 0 0 0 9115 4374 9474 45281;45282;45283;45284;45285 45246;45247;45248 45248 3 FIIENTDLAVANSIR QPTVRITELTDENVKFIIENTDLAVANSIR FIIENTDLAVANSIRRVFIAEVPIIAIDWV K F I I R R 2 1 2 1 0 0 1 0 0 3 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1674.8941 P19387;H3BRR2 P19387 21 35 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 4.5325E-07 97.214 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1989 1.0832 13.582 4 Median NaN NaN NaN 0 0 Median 1.5563 1.3171 NaN 1 0 Median 0.98677 0.97696 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0781 1.1565 NaN 1 1 Median 1.3333 1.0145 NaN 1 0 Median 9828500 4371800 5456700 0 0 0 1443900 484430 959460 4832900 2329000 2503900 0 0 0 2629900 1173800 1456000 921840 384510 537330 9116 2065 9475 45286;45287;45288;45289 45249;45250 45249 2 FIIGESQAGEQPTQTVMPGQVMR KDGYAVRAADGPGDRFIIGESQAGEQPTQT GEQPTQTVMPGQVMRVTTGAPIPCGADAVV R F I M R V 1 1 0 0 0 4 2 3 0 2 0 0 2 1 2 1 2 0 0 2 0 0 23 0 2503.2199 F5H039;Q9NQX3 F5H039 434 456 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 3 0.014428 15.699 By MS/MS 1 1.2357 1.2146 NaN 1 Median 1.2357 1.2146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2412700 1196800 1216000 2412700 1196800 1216000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9117 1017 9476 45290 45251 45251 1 FIIHAPPGEFNEVFNDVR EEQLSDEEKVRIAAKFIIHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 18 0 2100.0429 P47755;C9JUG7;F8W9N7;A0A0D9SET8 P47755 20 37 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 2.1406E-06 58.09 By MS/MS By MS/MS By matching 2 1 1 0.63768 0.61916 40.661 4 Median NaN NaN NaN 0 0 Median 0.46864 0.40932 54.271 2 1 Median 0.64412 0.63808 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63131 0.64429 NaN 1 0 Median NaN NaN NaN 0 0 Median 8286400 4938000 3348400 0 0 0 2733700 1715000 1018700 5308700 3084100 2224700 0 0 0 244010 138960 105050 0 0 0 9118 2354 9477 45291;45292;45293;45294 45252;45253;45254 45253 3 FIIPNVVK ESRLNLVQRNVNIFKFIIPNVVKYSPNCKL RNVNIFKFIIPNVVKYSPNCKLLIVSNPVD K F I V K Y 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 2 0 0 8 0 928.57459 P00338;F5GYU2;F5GXY2 P00338 119 126 LDHA L-lactate dehydrogenase A chain yes no 2 0.0044705 81.381 By MS/MS By MS/MS By MS/MS By matching By matching By matching 10 7 1 2 3 3 1.0123 0.92627 15.523 26 Median 1.0429 0.9681 8.9632 10 0 Median 0.93806 0.80786 6.9012 7 0 Median 1.1026 1.0631 NaN 1 0 Median 0.99601 0.8481 1.9097 2 0 Median 1.2199 1.2094 15.568 3 0 Median 1.1665 0.98002 9.8353 3 0 Plateau 993040000 481960000 511080000 602860000 283560000 319300000 343860000 176510000 167340000 35086000 16536000 18550000 5816800 2938000 2878800 4253300 1881800 2371500 1166200 529700 636490 9119 1813 9478 45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305;45306;45307;45308;45309;45310;45311;45312;45313;45314;45315;45316;45317;45318;45319;45320 45255;45256;45257;45258;45259;45260;45261;45262;45263;45264;45265;45266;45267;45268;45269;45270;45271 45255 17 FIIPQIVK ESRLNLVQRNVNVFKFIIPQIVKYSPDCII RNVNVFKFIIPQIVKYSPDCIIIVVSNPVD K F I V K Y 0 0 0 0 0 1 0 0 0 3 0 1 0 1 1 0 0 0 0 1 0 0 8 0 956.60589 P07195;A0A3B3IS95;A8MW50;C9J7H8 P07195 120 127 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2 0.0096746 60.358 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 13 6 5 2 5 1 1.0354 0.98413 12.412 32 Median 1.031 0.96954 4.406 13 0 Median 1.1338 0.97215 18.07 6 0 Median 1.0735 1.0883 13.486 5 0 Median 1.1576 0.97609 1.98 2 0 Median 1.014 1.008 17.67 5 0 Median 1.0198 0.8498 NaN 1 0 Median 1356400000 654320000 702050000 851460000 414730000 436730000 457160000 216950000 240210000 36201000 17403000 18798000 2839600 1278200 1561400 8119800 3682500 4437200 586480 272980 313500 9120 1880 9479 45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337;45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350;45351;45352 45272;45273;45274;45275;45276;45277;45278;45279;45280;45281;45282;45283;45284;45285;45286;45287;45288;45289;45290;45291;45292;45293;45294;45295;45296;45297 45281 26 FIIQSEKPPHYLESR VFSGPRRANGIQGLRFIIQSEKPPHYLESR FIIQSEKPPHYLESRVEAFLITMEKSIEDM R F I S R V 0 1 0 0 0 1 2 0 1 2 1 1 0 1 2 2 0 0 1 0 0 0 15 1 1842.9628 P14735;A0A3B3ISG5 P14735 848 862 IDE Insulin-degrading enzyme yes no 3;4 9.5703E-05 68.044 By MS/MS By matching 2 1 0.73579 0.76606 3.5702 3 Median 0.73353 0.76413 0.35815 2 0 Median 0.85655 0.81274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22923000 13694000 9229100 21040000 12438000 8601300 1883600 1255900 627770 0 0 0 0 0 0 0 0 0 0 0 0 9121 423 9480 45353;45354;45355 45298;45299;45300;45301 45300 4 FIKDNWEELYNR GVAGGSKHGRKAAWKFIKDNWEELYNRYQG AWKFIKDNWEELYNRYQGGFLISRLIKLSV K F I N R Y 0 1 2 1 0 0 2 0 0 1 1 1 0 1 0 0 0 1 1 0 0 0 12 1 1625.7838 E9PLK3;P55786;H0YDG0 E9PLK3 826 837 NPEPPS Puromycin-sensitive aminopeptidase yes no 2;3 0.00019733 73.067 By MS/MS 2 1.2679 1.3213 20.959 2 Median 1.2679 1.3213 20.959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26967000 11966000 15001000 26967000 11966000 15001000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9122 960 9481 45356;45357 45302;45303;45304 45303 3 FIKPIFTDESYLELYR LQVVWQRSRDICLKKFIKPIFTDESYLELY IKPIFTDESYLELYRKQKKHLNTQQLTAFQ K F I Y R K 0 1 0 1 0 0 2 0 0 2 2 1 0 2 1 1 1 0 2 0 0 0 16 1 2033.051 Q01780 Q01780 481 496 EXOSC10 Exosome component 10 yes yes 3 0.00086718 36.638 By MS/MS 1 0.85431 0.97137 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85431 0.97137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2196100 1057300 1138800 0 0 0 0 0 0 2196100 1057300 1138800 0 0 0 0 0 0 0 0 0 9123 2691 9482 45358 45305;45306 45305 2 FIKPLSNAYHELAQVYSTNNPSELR KVQQLPKYTSQIVGRFIKPLSNAYHELAQV ELAQVYSTNNPSELRNLVNKHSETFTRDNN R F I L R N 2 1 3 0 0 1 2 0 1 1 3 1 0 1 2 3 1 0 2 1 0 0 25 1 2890.4614 Q9UNS2 Q9UNS2 252 276 COPS3 COP9 signalosome complex subunit 3 yes yes 3;4 7.2443E-09 48.641 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.66392 0.62409 26.567 6 Median 0.65691 0.65799 36.077 2 0 Median 0.66392 0.62409 1.8617 2 0 Median 0.80919 0.92082 NaN 1 0 Median 0.54422 0.47563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33088000 18417000 14672000 7900700 4635100 3265600 13282000 7691800 5590500 9480500 4848800 4631700 2424700 1241100 1183600 0 0 0 0 0 0 9124 4350 9483 45359;45360;45361;45362;45363;45364 45307;45308;45309;45310;45311 45310 5 FILGVEGQQLVR CIFLMILLIPQVKEKFILGVEGQQLVRPKK KEKFILGVEGQQLVRPKKLPLIQKRDTGHT K F I V R P 0 1 0 0 0 2 1 2 0 1 2 0 0 1 0 0 0 0 0 2 0 0 12 0 1357.7718 C9JK28;Q9H2U9 C9JK28 20 31 ADAM7 Disintegrin and metalloproteinase domain-containing protein 7 yes no 2 0.0034893 45.997 By MS/MS By matching 3 1 1.1692 1.1414 18.529 4 Median 0.99408 1.0077 15.666 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6075 1.4128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6559900 3206500 3353400 6487800 3179500 3308400 0 0 0 0 0 0 72076 27068 45008 0 0 0 0 0 0 9125 705 9484 45365;45366;45367;45368 45312 45312 1 FILIQNR ______________________________ ______________________________ R F I N R A 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 902.53379 M0R0N4;M0QYZ2;P53680;X6R390 M0R0N4 6 12 AP2S1 AP-2 complex subunit sigma yes no 2 5.8684E-08 130.84 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 1.167 1.0809 18.882 9 Median 1.1316 1.1135 25.88 4 1 Median 1.3055 1.0887 19.004 2 2 Median 0.99893 1.0037 19.9 2 0 Median 1.3762 1.0769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145870000 63168000 82699000 24280000 10357000 13923000 56859000 24546000 32313000 38436000 17316000 21120000 26291000 10949000 15342000 0 0 0 0 0 0 9126 1421 9485 45369;45370;45371;45372;45373;45374;45375;45376;45377 45313;45314;45315;45316;45317;45318;45319;45320;45321;45322 45320 10 FILNLPTFSVR AVELLRKCLEELQKRFILNLPTFSVRIIDK LQKRFILNLPTFSVRIIDKNGIHDLDNISF R F I V R I 0 1 1 0 0 0 0 0 0 1 2 0 0 2 1 1 1 0 0 1 0 0 11 0 1305.7445 P49721;A0A087WVV1 P49721 171 181 PSMB2 Proteasome subunit beta type-2 yes no 2 0.00011219 124.23 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.0949 0.91559 16.413 7 Median 0.78266 0.75722 29.927 2 0 Median 1.1334 0.95148 6.5025 2 0 Median NaN NaN NaN 0 0 Median 1.1296 0.91559 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1414 0.92245 6.6924 2 0 Median 81941000 40060000 41882000 55584000 27756000 27828000 4310800 1987900 2322900 0 0 0 84356 40441 43915 0 0 0 21962000 10276000 11687000 9127 2392 9486 45378;45379;45380;45381;45382;45383;45384 45323;45324;45325;45326;45327;45328;45329;45330;45331 45331 9 FILPNVSTPVSDAFK EATSSTSNFSSLSSKFILPNVSTPVSDAFK FILPNVSTPVSDAFKTQMELLQAGLSRTPT K F I F K T 1 0 1 1 0 0 0 0 0 1 1 1 0 2 2 2 1 0 0 2 0 0 15 0 1633.8716 Q9P2D1 Q9P2D1 2465 2479 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.0097076 30.889 By MS/MS By matching 2 2 0.75069 0.76169 10.491 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69453 0.76169 7.4364 2 0 Median 0.88003 0.80337 15.701 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5031400 2896900 2134500 0 0 0 0 0 0 4661000 2681600 1979500 370350 215330 155020 0 0 0 0 0 0 9128 4220 9487 45385;45386;45387;45388 45332;45333 45332 2 FILPVNEGK LKEKMKIERAHMRLRFILPVNEGKKLKEKL AHMRLRFILPVNEGKKLKEKLKPLIKVIES R F I G K K 0 0 1 0 0 0 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 9 0 1015.5702 Q9Y3A5;A0A087X020 Q9Y3A5 176 184 SBDS Ribosome maturation protein SBDS yes no 2 0.00081314 96.492 By MS/MS By MS/MS 1 1 0.96558 0.8512 11.284 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98331 0.9219 NaN 1 0 Median 0.94816 0.78592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25427000 13414000 12013000 0 0 0 0 0 0 20280000 10819000 9461100 5146700 2595000 2551800 0 0 0 0 0 0 9129 100 9488 45389;45390 45334;45335;45336;45337;45338 45334 5 FILPVNEGKK LKEKMKIERAHMRLRFILPVNEGKKLKEKL HMRLRFILPVNEGKKLKEKLKPLIKVIESE R F I K K L 0 0 1 0 0 0 1 1 0 1 1 2 0 1 1 0 0 0 0 1 0 0 10 1 1143.6652 Q9Y3A5;A0A087X020 Q9Y3A5 176 185 SBDS Ribosome maturation protein SBDS yes no 2 0.064399 29.473 By MS/MS By matching 1 1 0.92586 0.87715 2.8646 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89779 0.8951 NaN 1 0 Median 0.95481 0.85956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10316000 5390900 4924900 0 0 0 0 0 0 7631500 3941400 3690000 2684300 1449400 1234900 0 0 0 0 0 0 9130 100 9489 45391;45392 45339 45339 1 FILQAIPSSQPMTVLK VIASTDPSAGTGSQKFILQAIPSSQPMTVL ILQAIPSSQPMTVLKENVMLQSQKAGSPPS K F I L K E 1 0 0 0 0 2 0 0 0 2 2 1 1 1 2 2 1 0 0 1 0 0 16 0 1771.9906 A0A0U1RRL5;P32519 A0A0U1RRL5 466 481 ELF1 ETS-related transcription factor Elf-1 yes no 2 0.0043619 34.378 By MS/MS 1 0.53231 0.56638 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53231 0.56638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1700800 1088700 612150 0 0 0 0 0 0 1700800 1088700 612150 0 0 0 0 0 0 0 0 0 9131 310 9490 45393 45340 45340 1 FILSIAYSPDGK VESGKKEYSLDTRGKFILSIAYSPDGKYLA RGKFILSIAYSPDGKYLASGAIDGIINIFD K F I G K Y 1 0 0 1 0 0 0 1 0 2 1 1 0 1 1 2 0 0 1 0 0 0 12 0 1309.6918 H0YL19;H0YN81;Q9GZS3;H3BQA8;H0YMF9 H0YL19 57 68 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.0006333 64.04 By MS/MS 1 0.86333 0.8271 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86333 0.8271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2429700 1403500 1026200 0 0 0 0 0 0 2429700 1403500 1026200 0 0 0 0 0 0 0 0 0 9132 1194 9491 45394 45341;45342 45341 2 FILVLNEK CVSAKEALETDLYKRFILVLNEKKTKIRSL ETDLYKRFILVLNEKKTKIRSLHNKLLNAA R F I E K K 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 8 0 974.58007 Q13426 Q13426 180 187 XRCC4 DNA repair protein XRCC4 yes yes 2 0.019541 47.082 By matching By MS/MS By matching 2 1 2 1.0908 0.95966 21.928 5 Median NaN NaN NaN 0 0 Median 1.2249 1.0816 20.824 2 0 Median 1.4913 1.494 NaN 1 0 Median 1.0598 0.93365 3.8861 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3225400 1248000 1977400 0 0 0 352910 107550 245360 2191400 816300 1375100 681050 324110 356930 0 0 0 0 0 0 9133 2815 9492 45395;45396;45397;45398;45399 45343 45343 1 FIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS ACYGVLRFIMESGAKGCEVVVSGKLRGQRA R F I A K G 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 8 0 881.43169 P23396;E9PL09;H0YEU2 P23396 125 132 RPS3 40S ribosomal protein S3 yes no 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 2 1 2 1.2791 1.0845 21.646 9 Median 1.1235 1.0179 NaN 1 0 Median 1.2911 1.0845 7.5547 3 1 Median 1.2888 1.2209 23.334 2 0 Median 1.2431 1.0469 NaN 1 0 Median 1.5437 1.6007 29.471 2 0 Median NaN NaN NaN 0 0 Median 93368000 42258000 51110000 52287000 24728000 27559000 18677000 7973900 10703000 11608000 5380400 6227400 3448800 1246300 2202400 7346500 2929100 4417400 0 0 0 9134 2112 9493 45400;45401;45402;45403;45404;45405;45406;45407;45408;45409 45344;45345;45346;45347;45348;45349;45350;45351;45352;45353;45354;45355;45356;45357 45353 14 FIMGDSSVQDQWK DQLRFSYLAVIEGAKFIMGDSSVQDQWKEL AKFIMGDSSVQDQWKELSHEDLEPPPEHIP K F I W K E 0 0 0 2 0 2 0 1 0 1 0 1 1 1 0 2 0 1 0 1 0 0 13 0 1539.7028 P18031;B4DSN5 P18031 280 292 PTPN1 Tyrosine-protein phosphatase non-receptor type 1;Tyrosine-protein phosphatase non-receptor type yes no 2 2.3822E-06 120.09 By MS/MS By matching 2 1 1.4927 1.3972 39.177 3 Median 1.328 1.2383 17.068 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.7514 2.3616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14655000 6246400 8408600 14484000 6189800 8294600 0 0 0 0 0 0 170580 56573 114010 0 0 0 0 0 0 9135 2052 9494 45410;45411;45412 45358;45359 45359 2 FINDQYEK GDHINNENCWQPIMKFINDQYEKYLQEEVN CWQPIMKFINDQYEKYLQEEVNINRKKRIP K F I E K Y 0 0 1 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 1055.4924 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9 Q9UHD8 382 389 SEPT9 Septin-9 yes no 2 0.0025485 123.69 By matching By MS/MS By MS/MS 2 4 5 1.414 1.2249 37.99 11 Median NaN NaN NaN 0 0 Median 2.6339 2.4333 70.245 2 0 Median 1.1326 1.1167 12.547 4 0 Median 1.4141 1.2249 13.501 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 208470000 91479000 116990000 0 0 0 7201300 1258400 5942900 169500000 77425000 92079000 31762000 12795000 18967000 0 0 0 0 0 0 9136 4276 9495 45413;45414;45415;45416;45417;45418;45419;45420;45421;45422;45423 45360;45361;45362;45363;45364;45365;45366;45367;45368;45369;45370 45368 11 FINEDRLPHLLLYGPPGTGK NDLISHQDILSTIQKFINEDRLPHLLLYGP RLPHLLLYGPPGTGKTSTILACAKQLYKDK K F I G K T 0 1 1 1 0 0 1 3 1 1 4 1 0 1 3 0 1 0 1 0 0 0 20 1 2236.2004 P40937;C9JH72;F5H304;F5H0U6 P40937 47 66 RFC5 Replication factor C subunit 5 yes no 3 0.0028249 25.888 By matching By MS/MS By matching 1 1 1 0.68913 0.67269 9.5483 3 Median 0.68913 0.73828 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5585 0.60995 NaN 1 0 Median 0.76162 0.67269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8193000 4565300 3627700 5128600 2730300 2398300 0 0 0 2661300 1600400 1061000 403030 234540 168490 0 0 0 0 0 0 9137 2293 9496 45424;45425;45426 45371 45371 1 FINFQLR VLASICVTQAFMMWKFINFQLRRWREHSAF TQAFMMWKFINFQLRRWREHSAFQAPAVKK K F I L R R 0 1 1 0 0 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 7 0 936.51814 G3XAN4;Q15629 G3XAN4 229 235 TRAM1 Translocating chain-associated membrane protein 1 yes no 2 0.0060381 94.669 By MS/MS By matching By MS/MS 2 2 1 1.2113 1.1193 17.532 5 Median 1.2594 1.2559 30.727 2 0 Median 1.2484 1.085 7.5706 2 0 Median 1.0179 1.1193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13713000 6814600 6898000 8154200 4142000 4012100 2665500 1220700 1444800 2892900 1451800 1441100 0 0 0 0 0 0 0 0 0 9138 1126 9497 45427;45428;45429;45430;45431 45372;45373;45374;45375 45373 4 FINLFPETK CSVATRALLLSTYIKFINLFPETKATIQGV LSTYIKFINLFPETKATIQGVLRAGSQLRN K F I T K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 1 0 1 0 0 0 0 0 9 0 1107.5964 O95782 O95782 548 556 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.046568 31.934 By MS/MS By matching 1 1 1.102 1.1439 14.011 2 Median 1.2658 1.263 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95929 1.036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4515900 2162700 2353100 2022100 1033400 988690 0 0 0 2493800 1129300 1364500 0 0 0 0 0 0 0 0 0 9139 1793 9498 45432;45433 45376 45376 1 FINLNEFTTYGSEESTKPASVR AAAAATGKLKSFARKFINLNEFTTYGSEES TTYGSEESTKPASVRALLFDISFLMLCHVA K F I V R A 1 1 2 0 0 0 3 1 0 1 1 1 0 2 1 3 3 0 1 1 0 0 22 1 2489.2074 F5GY88;A0A0B4J1W0;O75448;F5H5K2;B4DDR8 F5GY88 487 508 MED24 Mediator of RNA polymerase II transcription subunit 24 yes no 3 0.00011397 34.009 By MS/MS 1 0.90275 1.0254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90275 1.0254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3626300 1828700 1797600 0 0 0 0 0 0 3626300 1828700 1797600 0 0 0 0 0 0 0 0 0 9140 212 9499 45434 45377;45378 45378 2 FINLQPSTLTDK KTLIAKATAKEAGCRFINLQPSTLTDKWYG GCRFINLQPSTLTDKWYGESQKLAAAVFSL R F I D K W 0 0 1 1 0 1 0 0 0 1 2 1 0 1 1 1 2 0 0 0 0 0 12 0 1375.7347 Q8NBU5 Q8NBU5 154 165 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 2 0.001379 53.683 By MS/MS By matching 1 1 1.6225 1.4674 69.49 2 Median 0.96078 0.89772 NaN 1 0 Median 2.7401 2.3985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7158500 3565600 3593000 6469200 3377900 3091300 689340 187680 501650 0 0 0 0 0 0 0 0 0 0 0 0 9141 3412 9500 45435;45436 45379;45380 45380 2 FINLQPSTLTDKWYGESQK KTLIAKATAKEAGCRFINLQPSTLTDKWYG QPSTLTDKWYGESQKLAAAVFSLAIKLQPS R F I Q K L 0 0 1 1 0 2 1 1 0 1 2 2 0 1 1 2 2 1 1 0 0 0 19 1 2254.127 Q8NBU5 Q8NBU5 154 172 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 3 1.6619E-08 81.144 By MS/MS By matching By matching 2 1 1 0.99582 0.88607 23.649 4 Median 1.0123 0.95966 16.713 2 0 Median 0.67806 0.61568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0792 0.92075 NaN 1 0 Median 20064000 10017000 10047000 17858000 8845500 9013000 1183600 643420 540170 0 0 0 0 0 0 0 0 0 1022300 528340 493930 9142 3412 9501 45437;45438;45439;45440 45381;45382 45382 2 FINMFAVLDELK RKDFVSEAYLITLGKFINMFAVLDELKNMK LGKFINMFAVLDELKNMKCSVKNDHSAYKR K F I L K N 1 0 1 1 0 0 1 0 0 1 2 1 1 2 0 0 0 0 0 1 0 0 12 0 1438.753 E7EVJ5;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A087WVE1;A0A087WTQ3;A0A087WWZ1 Q7L576 164 175 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.0034893 45.997 By MS/MS By MS/MS By matching 1 2 1 1.0604 1.1451 10.687 4 Linear 1.1095 1.1119 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94657 0.97564 14.733 2 0 Median 1.221 1.0601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3468400 1684200 1784200 1778000 887790 890250 0 0 0 1511600 718500 793080 178750 77894 100860 0 0 0 0 0 0 9143 3224;897 9502 45441;45442;45443;45444 45383;45384;45385 45383 3 FINNEYYPADLQVAPTQDLR RVEPRSRELSPLFLRFINNEYYPADLQVAP YYPADLQVAPTQDLRRKGKGMVAEEIEEEP R F I L R R 2 1 2 2 0 2 1 0 0 1 2 0 0 1 2 0 1 0 2 1 0 0 20 0 2366.1543 O75691 O75691 849 868 UTP20 Small subunit processome component 20 homolog yes yes 2 2.1103E-06 50.563 By MS/MS 1 0.77096 0.85674 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77096 0.85674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2609600 1401800 1207900 0 0 0 0 0 0 2609600 1401800 1207900 0 0 0 0 0 0 0 0 0 9144 1691 9503 45445 45386;45387 45387 2 FINNEYYPADLQVAPTQDLRR RVEPRSRELSPLFLRFINNEYYPADLQVAP YPADLQVAPTQDLRRKGKGMVAEEIEEEPA R F I R R K 2 2 2 2 0 2 1 0 0 1 2 0 0 1 2 0 1 0 2 1 0 0 21 1 2522.2554 O75691 O75691 849 869 UTP20 Small subunit processome component 20 homolog yes yes 3 0.00022879 30.767 By MS/MS By MS/MS 2 1 0.86786 1.0758 25.017 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.087 1.2808 24.667 2 0 Median NaN NaN NaN 0 0 Median 0.86786 0.93883 NaN 1 0 Median NaN NaN NaN 0 0 Median 11667000 5905200 5761300 0 0 0 0 0 0 8797700 4349800 4447800 0 0 0 2868900 1555400 1313500 0 0 0 9145 1691 9504 45446;45447;45448 45388;45389;45390 45389 3 FINNNAVTK NDAGFVAALDKACGRFINNNAVTKMAQSSS DKACGRFINNNAVTKMAQSSSKSPELLARY R F I T K M 1 0 3 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1019.54 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 378 386 CUL1 Cullin-1 yes no 2 0.037899 34.253 By matching By MS/MS By MS/MS 1 2 1 1.322 1.0733 4.8626 4 Linear 1.0707 1.082 NaN 1 0 Median 1.2586 1.115 6.5249 2 0 Median NaN NaN NaN 0 0 Median 1.2046 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6206000 2683800 3522200 236240 127080 109160 4115800 1813300 2302400 0 0 0 1853900 743360 1110600 0 0 0 0 0 0 9146 256 9505 45449;45450;45451;45452 45391;45392;45393 45391 3 FINPAIVSPYEAGILDK PQNSIGAVGSAMFLRFINPAIVSPYEAGIL NPAIVSPYEAGILDKKPPPRIERGLKLMSK R F I D K K 2 0 1 1 0 0 1 1 0 3 1 1 0 1 2 1 0 0 1 1 0 0 17 0 1845.9877 P21359;H0Y465;J3KSB5 P21359 1413 1429 NF1 Neurofibromin;Neurofibromin truncated yes no 2 0.00032838 45.257 By MS/MS 1 0.60301 0.59611 NaN 1 Median 0.60301 0.59611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2229900 1332200 897720 2229900 1332200 897720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9147 1147 9506 45453 45394;45395 45395 2 FINQLLGVVPLSTPTEDK LKVFVDLLPATQCTKFINQLLGVVPLSTPT QLLGVVPLSTPTEDKLALPADIRALQQHLC K F I D K L 0 0 1 1 0 1 1 1 0 1 3 1 0 1 2 1 2 0 0 2 0 0 18 0 1970.0724 Q14CX7 Q14CX7 384 401 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.0039894 28.806 By matching By matching By MS/MS 1 1 1 0.81544 0.78474 30.729 3 Median 0.47295 0.48026 NaN 1 0 Median 0.86243 0.78474 NaN 1 0 Median 0.81544 0.84551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1870700 1052700 817930 610750 393100 217650 339240 187220 152020 920680 472430 448260 0 0 0 0 0 0 0 0 0 9148 2908 9507 45454;45455;45456 45396;45397 45397 2 FIPGKPVLETR MFIQTQDTPNPNSLKFIPGKPVLETRTMDF NSLKFIPGKPVLETRTMDFPTPAAAFRSPL K F I T R T 0 1 0 0 0 0 1 1 0 1 1 1 0 1 2 0 1 0 0 1 0 0 11 1 1255.7289 Q9UMS0 Q9UMS0 74 84 NFU1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial yes yes 2;3 0.0003214 61.435 By MS/MS By MS/MS 2 1 0.67718 0.70798 10.037 3 Median 0.63521 0.6653 8.794 2 0 Median 0.81664 0.76258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16546000 9215900 7330400 14446000 8245700 6200600 2100000 970240 1129800 0 0 0 0 0 0 0 0 0 0 0 0 9149 4333 9508 45457;45458;45459 45398;45399;45400 45399 3 FIPGSALNGMVEMMDR TDIKTAAKELLKKVKFIPGSALNGMVEMMD IPGSALNGMVEMMDRRPYWCISRQRVWGVP K F I D R R 1 1 1 1 0 0 1 2 0 1 1 0 3 1 1 1 0 0 0 1 0 0 16 0 1766.8154 Q9NSE4 Q9NSE4 501 516 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.00013785 59.57 By MS/MS By matching 1 1 1.0194 0.94581 12.432 2 Median 0.89579 0.86622 NaN 1 0 Median 1.16 1.0327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4195000 2024100 2170800 4086300 1978500 2107800 108620 45655 62965 0 0 0 0 0 0 0 0 0 0 0 0 9150 4103 9509 45460;45461 45401;45402 45401 2 FIPHENGVHSIDVK ECYVSELDSDKHTIRFIPHENGVHSIDVKF RFIPHENGVHSIDVKFNGAHIPGSPFKIRV R F I V K F 0 0 1 1 0 0 1 1 2 2 0 1 0 1 1 1 0 0 0 2 0 0 14 0 1590.8154 Q14315 Q14315 2468 2481 FLNC Filamin-C yes yes 3;4 9.1122E-05 73.022 By MS/MS By MS/MS By MS/MS 2 3 1 0.89208 0.84553 13.085 4 Median 0.92738 0.93011 NaN 1 0 Median 0.84234 0.74773 3.9013 2 0 Median NaN NaN NaN 0 0 Median 0.98434 0.93923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103250000 49624000 53622000 16311000 8634200 7676400 85508000 40217000 45291000 0 0 0 1426900 772570 654290 0 0 0 0 0 0 9151 2871 9510 45462;45463;45464;45465;45466;45467 45403;45404;45405;45406;45407;45408;45409 45406 7 FIPHENGVHTIDVK ECHVSELEPDKYAVRFIPHENGVHTIDVKF RFIPHENGVHTIDVKFNGSHVVGSPFKVRV R F I V K F 0 0 1 1 0 0 1 1 2 2 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1604.8311 O75369;E7EN95 O75369 2347 2360 FLNB Filamin-B yes no 2;3;4 0.00019955 79.659 By MS/MS By MS/MS 1 2 1.1101 0.98025 42.937 3 Median 1.9754 1.9702 NaN 1 1 Median 1.0573 0.93992 5.942 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62070000 29966000 32104000 6433200 2360500 4072700 55637000 27605000 28032000 0 0 0 0 0 0 0 0 0 0 0 0 9152 1664 9511 45468;45469;45470 45410;45411;45412;45413 45410 4 FIPHKDYTANR SFRLQMTIENMNHLKFIPHKDYTANRLVSG NHLKFIPHKDYTANRLVSGLLQLPSNTSLV K F I N R L 1 1 1 1 0 0 0 0 1 1 0 1 0 1 1 0 1 0 1 0 0 0 11 1 1360.6888 Q9BTE3 Q9BTE3 432 442 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 3 0.0027974 39.917 By MS/MS By MS/MS 1 1 0.73127 0.73688 NaN 1 Median 0.73127 0.73688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3633500 2088000 1545500 3633500 2088000 1545500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9153 3825 9512 45471;45472 45414;45415;45416 45414 3 FIPLAELK KWSMVDVQFVRMMKRFIPLAELKSYHQAHK FVRMMKRFIPLAELKSYHQAHKATGGPLKN R F I L K S 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 8 0 929.5586 Q9P016 Q9P016 172 179 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.014809 50.632 By matching By MS/MS By matching By matching 1 1 2 2 0.96023 0.80416 42.63 6 Median NaN NaN NaN 0 0 Median 1.2279 1.0658 NaN 1 0 Median 0.82212 0.77071 NaN 1 0 Median 1.1481 0.96643 20.147 2 0 Median NaN NaN NaN 0 0 Median 0.61584 0.51359 57.56 2 0 Median 23231000 12074000 11156000 0 0 0 134090 66842 67250 18260000 9633700 8625800 4569600 2237600 2332000 0 0 0 267350 136070 131280 9154 4198 9513 45473;45474;45475;45476;45477;45478 45417 45417 1 FIPLARPEVK HDLGHGPFSHMFDGRFIPLARPEVKWTHEQ MFDGRFIPLARPEVKWTHEQGSVMMFEHLI R F I V K W 1 1 0 0 0 0 1 0 0 1 1 1 0 1 2 0 0 0 0 1 0 0 10 1 1168.6968 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9 Q9Y3Z3 221 230 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.0018019 80.219 By MS/MS By matching By matching 1 1 1 0.85469 0.85745 42.165 3 Median 0.85469 0.85745 NaN 1 0 Median 0.46875 0.45007 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.085 0.99487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16275000 8734300 7540600 10412000 5732100 4679500 5464800 2781900 2682800 0 0 0 398480 220260 178220 0 0 0 0 0 0 9155 4436 9514 45479;45480;45481 45418 45418 1 FIPLSEPAPVPPIPNEQQLAR PRKPVAGALDVSFNKFIPLSEPAPVPPIPN PAPVPPIPNEQQLARLTDYVAFLEN_____ K F I A R L 2 1 1 0 0 2 2 0 0 2 2 0 0 1 6 1 0 0 0 1 0 0 21 0 2312.2529 Q99627;E9PGT6;H7C3S9 Q99627 179 199 COPS8 COP9 signalosome complex subunit 8 yes no 3 0.0099631 20.446 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.41258 0.38741 110.95 5 Median 0.40456 0.3907 19.139 2 0 Median 0.079936 0.081792 NaN 1 0 Median 0.41258 0.38741 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7621 1.8641 NaN 1 0 Median NaN NaN NaN 0 0 Median 13336000 8417400 4919000 8059300 5560200 2499100 1097700 997640 100070 1733900 1231800 502160 0 0 0 2445500 627760 1817700 0 0 0 9156 927 9515 45482;45483;45484;45485;45486 45419;45420;45421 45420 3 FIQDHLKPSPQFQEQVK MALDLSQIPTKELDRFIQDHLKPSPQFQEQ QDHLKPSPQFQEQVKKAIDIILRCLHENCV R F I V K K 0 0 0 1 0 4 1 0 1 1 1 2 0 2 2 1 0 0 0 1 0 0 17 1 2068.0742 Q9Y6K5 Q9Y6K5 419 435 OAS3 2-5-oligoadenylate synthase 3 yes yes 3 0.0010823 33.624 By MS/MS 1 1.1771 1.1212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1771 1.1212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1445900 622700 823220 0 0 0 0 0 0 0 0 0 1445900 622700 823220 0 0 0 0 0 0 9157 4495 9516 45487 45422 45422 1 FIQELSGSSPK QEKTRLLQQNTQLKRFIQELSGSSPKRRRA QLKRFIQELSGSSPKRRRAEDKDEGIGSPD R F I P K R 0 0 0 0 0 1 1 1 0 1 1 1 0 1 1 3 0 0 0 0 0 0 11 0 1191.6136 Q01664;I3L254 Q01664 116 126 TFAP4 Transcription factor AP-4 yes no 2 0.0037536 71.451 By MS/MS By MS/MS 1 1 0.50935 0.48232 12.631 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49597 0.52738 NaN 1 1 Median 0.5231 0.44111 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5583000 3674100 1908900 0 0 0 0 0 0 4517000 3033500 1483500 1066000 640640 425340 0 0 0 0 0 0 9158 2690 9517 45488;45489 45423;45424 45423 2 FIQEVHAHYLHQR WPELGLPDSPSNLLRFIQEVHAHYLHQRPL LRFIQEVHAHYLHQRPLHTPIIVHCSSGVG R F I Q R P 1 1 0 0 0 2 1 0 3 1 1 0 0 1 0 0 0 0 1 1 0 0 13 0 1676.8536 Q9H3S7 Q9H3S7 1370 1382 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 yes yes 4 0.00035477 55.452 By MS/MS 1 1.5053 1.2558 NaN 1 Median NaN NaN NaN 0 0 Median 1.5053 1.2558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1213900 503710 710160 0 0 0 1213900 503710 710160 0 0 0 0 0 0 0 0 0 0 0 0 9159 3958 9518 45490 45425 45425 1 FIQLLSDQSDQSVLIQK LVAAMQHFLPVLKDRFIQLLSDQSDQSVLI QLLSDQSDQSVLIQKQIFKIFYALVQYTLP R F I Q K Q 0 0 0 2 0 4 0 0 0 2 3 1 0 1 0 3 0 0 0 1 0 0 17 0 1961.047 O95373 O95373 185 201 IPO7 Importin-7 yes yes 2;3 0.00011042 49.35 By MS/MS By MS/MS By MS/MS 2 3 2 1.1394 0.99974 27.078 7 Median 1.0569 1.0443 23.878 2 0 Median 1.1394 0.99974 2.3072 3 0 Median 1.2902 1.3947 49.306 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14963000 7073600 7889000 6892900 3172200 3720700 4238000 1935300 2302700 3831700 1966100 1865500 0 0 0 0 0 0 0 0 0 9160 1768 9519 45491;45492;45493;45494;45495;45496;45497 45426;45427;45428;45429;45430 45427 5 FIQPNIGELPTALK KEGLDEVAGIINDAKFIQPNIGELPTALKG KFIQPNIGELPTALKGRLNDSNKILVQQTL K F I L K G 1 0 1 0 0 1 1 1 0 2 2 1 0 1 2 0 1 0 0 0 0 0 14 0 1539.8661 Q14008 Q14008 893 906 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00022535 76.927 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 1 2 0.84085 0.7818 14.008 11 Median 0.83231 0.82463 5.5809 2 0 Median 0.69351 0.6023 NaN 1 0 Median 0.783 0.84772 11.448 2 0 Median 0.85707 0.77003 14.673 3 0 Median 0.89018 0.93174 NaN 1 1 Median 0.84321 0.71202 2.5031 2 0 Median 95304000 50635000 44670000 13439000 7168800 6270100 815620 495300 320320 62025000 32987000 29038000 10101000 5284400 4816500 6775900 3575000 3200900 2147800 1123900 1023900 9161 2850 9520 45498;45499;45500;45501;45502;45503;45504;45505;45506;45507;45508;45509 45431;45432;45433;45434;45435;45436;45437;45438;45439;45440;45441;45442;45443;45444;45445 45432 15 FIQSEMSEAVER QSIEDKEDKPPPRQKFIQSEMSEAVERARK RQKFIQSEMSEAVERARKRREEEERRAREE K F I E R A 1 1 0 0 0 1 3 0 0 1 0 0 1 1 0 2 0 0 0 1 0 0 12 0 1424.6606 Q5JSZ5;Q5JT00 Q5JSZ5 494 505 PRRC2B Protein PRRC2B yes no 2 0.015576 53.756 By MS/MS 1 1.6571 1.4004 NaN 1 Median NaN NaN NaN 0 0 Median 1.6571 1.4004 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2529000 830920 1698100 0 0 0 2529000 830920 1698100 0 0 0 0 0 0 0 0 0 0 0 0 9162 3051 9521 45510 45446 45446 1 FIQTFGK LGDPKAPGLGAFRRKFIQTFGKEFDKHFGK GLGAFRRKFIQTFGKEFDKHFGKGGSKLLR K F I G K E 0 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 7 0 839.45414 P78527 P78527 3632 3638 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.014908 73.039 By matching By matching By MS/MS By MS/MS By MS/MS 1 4 2 1 2 1.2155 1.0816 18.637 10 Median 1.0519 1.0125 NaN 1 0 Median 1.2155 1.0538 18.652 4 0 Median 0.84209 0.91761 7.4693 2 0 Median 1.4503 1.4209 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5151 1.279 12.881 2 0 Median 79924000 37796000 42128000 2903700 1146300 1757400 30395000 13643000 16752000 38307000 19654000 18653000 5093700 1989700 3104000 0 0 0 3224000 1362500 1861500 9163 2647 9522 45511;45512;45513;45514;45515;45516;45517;45518;45519;45520 45447;45448;45449;45450;45451 45450 5 FIQTFGKEFDK LGDPKAPGLGAFRRKFIQTFGKEFDKHFGK FRRKFIQTFGKEFDKHFGKGGSKLLRMKLS K F I D K H 0 0 0 1 0 1 1 1 0 1 0 2 0 3 0 0 1 0 0 0 0 0 11 1 1358.6871 P78527 P78527 3632 3642 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00077499 53.569 By MS/MS 1 0.99051 1.1239 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99051 1.1239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7213500 3891200 3322300 0 0 0 0 0 0 7213500 3891200 3322300 0 0 0 0 0 0 0 0 0 9164 2647 9523 45521 45452;45453 45452 2 FIQTFGKEFDKHFGK LGDPKAPGLGAFRRKFIQTFGKEFDKHFGK FIQTFGKEFDKHFGKGGSKLLRMKLSDFND K F I G K G 0 0 0 1 0 1 1 2 1 1 0 3 0 4 0 0 1 0 0 0 0 0 15 2 1827.9308 P78527 P78527 3632 3646 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 4 0.00036439 47.037 By MS/MS By MS/MS 2 1 0.95949 1.1913 12.508 3 Plateau 0.83401 0.98514 8.5011 2 2 Median NaN NaN NaN 0 0 Median 0.95949 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27577000 13499000 14078000 21399000 10625000 10774000 0 0 0 6178500 2874100 3304400 0 0 0 0 0 0 0 0 0 9165 2647 9524 45522;45523;45524 45454;45455;45456 45456 3 FIQYLASR SLITTHHLMVYGNERFIQYLASRNTLFNLS MVYGNERFIQYLASRNTLFNLSNFLDKSGL R F I S R N 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 8 0 996.53927 Q13492;E9PI56;E9PKP6;E9PLJ8;E5RFU0;E5RHK9;E5RFC6;E5RK51;E5RIJ5;E5RGY9;E9PDG8;O60641 Q13492 93 100 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 2 0.0032009 100.45 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1.0516 0.94424 39.207 8 Median 0.99154 0.94495 NaN 1 0 Median 1.0903 0.94353 NaN 1 0 Median 0.59936 0.60123 84.36 2 0 Median 1.1623 0.984 14.987 2 0 Median NaN NaN NaN 0 0 Median 1.0765 0.93096 14.347 2 0 Median 43063000 20542000 22521000 10295000 5244800 5050200 6980400 3262900 3717500 21800000 10269000 11532000 2086400 918170 1168200 0 0 0 1900900 847580 1053300 9166 2820 9525 45525;45526;45527;45528;45529;45530;45531;45532 45457;45458;45459;45460;45461;45462;45463 45458 7 FIRPMGLR FVGDGFTRKPPKYERFIRPMGLRFKKAHVT KPPKYERFIRPMGLRFKKAHVTHPELKATF R F I L R F 0 2 0 0 0 0 0 1 0 1 1 0 1 1 1 0 0 0 0 0 0 0 8 1 988.56404 O95478 O95478 170 177 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 2 0.019174 83.801 By MS/MS By matching 1 1 0.97376 0.94348 5.2797 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91755 0.97936 NaN 1 0 Median 1.0334 0.9089 NaN 1 0 Median 9347500 4294100 5053400 0 0 0 0 0 0 0 0 0 0 0 0 5057800 2548500 2509200 4289700 1745600 2544100 9167 1775 9526 45533;45534 45464 45464 1 FISATDTIR LDSDMQTLVYENYNKFISATDTIRKMKNDF YENYNKFISATDTIRKMKNDFRKMEDEMDR K F I I R K 1 1 0 1 0 0 0 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 9 0 1022.5397 Q9UID3;E9PMB6;E9PQN6;E9PJ36;E9PKX7 Q9UID3 115 123 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes no 2 0.050756 44.447 By MS/MS 1 0.92502 0.90946 NaN 1 Median 0.92502 0.90946 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2395900 1289900 1106000 2395900 1289900 1106000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9168 4289 9527 45535 45465 45465 1 FISEFLQPNR MPALLYQTPAGDLDKFISEFLQPNRQFLAQ GDLDKFISEFLQPNRQFLAQVNKAVDTICS K F I N R Q 0 1 1 0 0 1 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 0 10 0 1249.6455 Q9Y6K5 Q9Y6K5 758 767 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 0.0015147 64.836 By matching By MS/MS By matching 1 1 2 1.1256 1.0453 17.695 4 Median 1.0096 0.99374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94998 1.0146 NaN 1 0 Median 1.48 1.2516 21.252 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5224800 2761900 2462900 2297200 1310200 986970 0 0 0 2120500 1086300 1034200 807150 365410 441730 0 0 0 0 0 0 9169 4495 9528 45536;45537;45538;45539 45466 45466 1 FISELAR NICEQMIQIREDHMRFISELARYSNSEVVT QIREDHMRFISELARYSNSEVVTGSGRQEA R F I A R Y 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 834.45995 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 359 365 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.020057 60.788 By MS/MS By MS/MS By MS/MS 1 1 1 1.1898 1.1727 14.603 3 Plateau NaN NaN NaN 0 0 Median 1.2526 1.051 NaN 1 0 Median 1.1898 1.3085 NaN 1 0 Median 1.1686 0.9921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21045000 9527900 11517000 0 0 0 7551300 3449000 4102300 8020700 3543600 4477100 5473300 2535200 2938100 0 0 0 0 0 0 9170 3224;897 9529 45540;45541;45542 45467;45468;45469;45470 45467 4 FISETLR THYSELTTLTSQYIKFISETLRRMEEEERL TLTSQYIKFISETLRRMEEEERLAEQQRAE K F I L R R 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 7 0 864.47052 Q15149;H0YDN1 Q15149 1473 1479 PLEC Plectin yes no 2 0.0069988 90.986 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1.4187 1.2535 12.37 6 Median 1.3715 1.3467 NaN 1 0 Median 1.4896 1.2298 11.763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4622 1.5235 NaN 1 0 Median 1.3854 1.142 4.1125 2 0 Median 54230000 22641000 31590000 10095000 4534700 5560300 27442000 11460000 15982000 0 0 0 0 0 0 5847200 2255500 3591700 10846000 4390800 6455500 9171 2933 9530 45543;45544;45545;45546;45547;45548 45471;45472;45473;45474;45475 45472 5 FISETLRR THYSELTTLTSQYIKFISETLRRMEEEERL LTSQYIKFISETLRRMEEEERLAEQQRAEE K F I R R M 0 2 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 8 1 1020.5716 Q15149;H0YDN1 Q15149 1473 1480 PLEC Plectin yes no 2 0.003728 125.25 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 0.80314 0.86881 10.405 5 Median 0.86858 0.94389 NaN 1 0 Median 0.76202 0.7142 NaN 1 0 Median 0.79751 0.87647 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80314 0.86881 NaN 1 0 Median 0.93674 0.82218 NaN 1 0 Median 31987000 16775000 15212000 5326200 2917100 2409100 5605800 3002500 2603400 3291400 1763200 1528200 0 0 0 2226600 1174200 1052400 15537000 7918000 7618700 9172 2933 9531 45549;45550;45551;45552;45553 45476;45477 45477 2 FISGHTSELGDFR KEVLLPEVGAKGQLKFISGHTSELGDFRFT LKFISGHTSELGDFRFTLLPPTSPGDTAPK K F I F R F 0 1 0 1 0 0 1 2 1 1 1 0 0 2 0 2 1 0 0 0 0 0 13 0 1464.6997 Q13724;A0A3B3IRK6;A0A3B3IS52;A0A3B3ITC1;C9JDQ1 Q13724 229 241 MOGS Mannosyl-oligosaccharide glucosidase yes no 2;3 0.0004217 70.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 2 1 1 1.244 1.204 25.051 10 Median 1.1159 1.0557 17.095 3 0 Plateau 1.2104 1.0482 21.262 2 0 Median 1.198 1.2718 NaN 1 0 Median 1.4554 1.2541 23.796 2 0 Median 1.8099 1.918 NaN 1 0 Median 1.7009 1.3984 NaN 1 0 Median 62241000 26786000 35455000 31750000 14075000 17675000 10897000 4725400 6171400 11126000 4795400 6330900 5315800 2085400 3230400 2626900 890570 1736300 525220 214710 310510 9173 2835 9532 45554;45555;45556;45557;45558;45559;45560;45561;45562;45563 45478;45479;45480;45481;45482;45483;45484;45485;45486;45487;45488 45479 11 FISLASLEYSDYSK DSSVAVSSGGELFLRFISLASLEYSDYSKC RFISLASLEYSDYSKCKKIMIERGELFLRR R F I S K C 1 0 0 1 0 0 1 0 0 1 2 1 0 1 0 4 0 0 2 0 0 0 14 0 1621.7876 Q14232;F5H0D0;H0YGG4 Q14232 75 88 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2 0.00048865 69.01 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3499 1.1433 8.8758 4 Median 1.1797 1.1061 NaN 1 0 Median 1.3657 1.1444 NaN 1 0 Median 1.4004 1.3467 NaN 1 0 Median 1.3342 1.1422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38278000 15707000 22571000 7039300 2815700 4223600 28698000 11799000 16899000 2014400 860670 1153800 526570 231840 294740 0 0 0 0 0 0 9174 2866 9533 45564;45565;45566;45567 45489;45490;45491;45492 45489 4 FISNPNSIILAVTAANTDMATSEALK QPKDIELQIRELILRFISNPNSIILAVTAA VTAANTDMATSEALKISREVDPDGRRTLAV R F I L K I 5 0 3 1 0 0 1 0 0 3 2 1 1 1 1 3 3 0 0 1 0 0 26 0 2691.3789 O00429;F8VZ52;B4DDQ3 O00429 173 198 DNM1L Dynamin-1-like protein yes no 3 0.064083 6.295 By MS/MS By matching By matching 2 1 1 0.73182 0.6824 69.469 4 Median 0.66119 0.64609 0 2 0 Median 0.80999 0.72075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6093 2.6783 NaN 1 0 Median NaN NaN NaN 0 0 Median 7502800 3745500 3757400 5241200 2686800 2554400 1413900 863160 550740 0 0 0 0 0 0 847750 195550 652200 0 0 0 9175 1463 9534 45568;45569;45570;45571 45493 45493 1 FISVACISHVAAIGDQK HLRYFDSNKDAYSKRFISVACISHVAAIGD SVACISHVAAIGDQKFEVITNNRTFAFRAE R F I Q K F 3 0 0 1 1 1 0 1 1 3 0 1 0 1 0 2 0 0 0 2 0 0 17 0 1814.9349 E7EU13;Q96P48 E7EU13 126 142 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 3 0.055864 9.6577 By MS/MS 1 34.771 33.551 NaN 1 Median 34.771 33.551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17674000 699600 16974000 17674000 699600 16974000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9176 893 9535 45572 45494 45494 1 FISVGYVDDTQFVR YFYTSVSRPGRGEPRFISVGYVDDTQFVRF RFISVGYVDDTQFVRFDSDAASPREEPRAP R F I V R F 0 1 0 2 0 1 0 1 0 1 0 0 0 2 0 1 1 0 1 3 0 0 14 0 1644.8148 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A140T9L3;A0A140TA05;A0A140T942;A0A140T9E1;A0A140TA12;F8W9Z8;A0A140T9Z7;A0A1W2PPR8;P01889;F6U0H7;A0A140TA21;A0A140T9D4 A0A1W2PPR8 46 59 HLA-C;HLA-B HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 2 1.1966E-07 115.18 By MS/MS By MS/MS By MS/MS 1 2 1 1.1798 1.1002 4.9757 4 Median 1.0955 1.092 NaN 1 0 Median 1.2977 1.1322 3.0065 2 2 Median 0.94667 1.0257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36513000 16750000 19763000 11862000 5459300 6402300 20719000 8952300 11767000 3932800 2338800 1594000 0 0 0 0 0 0 0 0 0 9177 314;339 9536 45573;45574;45575;45576 45495;45496;45497;45498;45499 45498 5 FITDNTVEER RAHRIGQTKTVRVFRFITDNTVEERIVERA VRVFRFITDNTVEERIVERAEMKLRLDSIV R F I E R I 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1222.583 O60264 O60264 607 616 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 2.4464E-15 183.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1.0387 0.94157 14.597 8 Median NaN NaN NaN 0 0 Median 1.0735 0.91093 NaN 1 0 Median 0.83807 0.92094 NaN 1 0 Median 1.1696 0.99075 NaN 1 0 Median 0.93266 0.94109 3.2043 2 0 Median 1.2629 1.0156 24.666 3 1 Median 151210000 73703000 77503000 0 0 0 3898300 1725200 2173100 48007000 25402000 22605000 11204000 5201800 6002000 64941000 31549000 33392000 23155000 9824700 13331000 9178 1608 9537 45577;45578;45579;45580;45581;45582;45583;45584 45500;45501;45502;45503;45504;45505;45506;45507;45508;45509;45510 45501 11 FITEIWHPNVDK LTFPKDYPLRPPKMKFITEIWHPNVDKNGD KMKFITEIWHPNVDKNGDVCISILHEPGED K F I D K N 0 0 1 1 0 0 1 0 1 2 0 1 0 1 1 0 1 1 0 1 0 0 12 0 1497.7616 P62253;K7EPR7;I3L2H7 P62253 74 85 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes no 2;3 0.00020862 85.355 By MS/MS By matching 2 1 0.87052 0.8033 3.9262 3 Plateau 0.84981 0.8033 3.6286 2 0 Median 0.87052 0.76299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11115000 5772600 5342700 10665000 5489700 5175700 449820 282860 166960 0 0 0 0 0 0 0 0 0 0 0 0 9179 2575 9538 45585;45586;45587 45511;45512;45513 45513 3 FITEPVSGAEMGTLR MAEPRGPVDHGVQIRFITEPVSGAEMGTLR FITEPVSGAEMGTLRRGGRRPAKDARASTY R F I L R R 1 1 0 0 0 0 2 2 0 1 1 0 1 1 1 1 2 0 0 1 0 0 15 0 1606.8025 Q9P2M7;A2A3M4;A6PVU7 Q9P2M7 16 30 CGN Cingulin yes no 2 5.6743E-14 126.67 By MS/MS 1 0.77327 0.8065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77327 0.8065 NaN 1 1 Median NaN NaN NaN 0 0 Median 5614600 3082700 2531900 0 0 0 0 0 0 0 0 0 0 0 0 5614600 3082700 2531900 0 0 0 9180 4226 9539 45588 45514 45514 1 FITHAPPGEFNEVFNDVR DDRVSDEEKVRIAAKFITHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 1 0 0 0 3 2 0 1 0 0 2 0 0 18 0 2088.0065 P52907 P52907 20 37 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 5.5695E-09 96.666 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.78138 0.75849 25.736 5 Median 0.98118 0.95594 44.276 2 0 Median NaN NaN NaN 0 0 Median 0.78138 0.75849 NaN 1 0 Median 1.0645 0.8877 NaN 1 0 Median 0.67266 0.72241 NaN 1 0 Median NaN NaN NaN 0 0 Median 57305000 30499000 26805000 17763000 9286800 8476300 0 0 0 35009000 18869000 16140000 2027500 974760 1052700 2505200 1369000 1136200 0 0 0 9181 2461 9540 45589;45590;45591;45592;45593 45515;45516;45517;45518;45519;45520;45521;45522 45518 8 FITIFGTR LFQAGELKWGTDEEKFITIFGTRSVSHLRK WGTDEEKFITIFGTRSVSHLRKVFDKYMTI K F I T R S 0 1 0 0 0 0 0 1 0 2 0 0 0 2 0 0 2 0 0 0 0 0 8 0 953.53345 P08758;D6RBL5;D6RBE9 P08758 194 201 ANXA5 Annexin A5;Annexin yes no 2 0.021359 45.718 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.1969 1.0397 5.5761 6 Median 1.021 1.0235 NaN 1 0 Median 1.234 1.0416 1.35 2 0 Median 1.1672 1.1564 NaN 1 0 Median 1.2475 1.0479 NaN 1 0 Median 1.0102 0.97611 NaN 1 0 Median NaN NaN NaN 0 0 Median 34778000 15399000 19380000 2075300 1018600 1056700 26362000 11543000 14819000 5431400 2414600 3016900 416620 191480 225140 492570 230650 261920 0 0 0 9182 1909 9541 45594;45595;45596;45597;45598;45599 45523;45524;45525 45523 3 FITLLLPGGAQTAVR DARPLRDVLAANPNRFITLLLPGGAQTAVR FITLLLPGGAQTAVRPGSPSTSTMRLDLQF R F I V R P 2 1 0 0 0 1 0 2 0 1 3 0 0 1 1 0 2 0 0 1 0 0 15 0 1555.9086 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1592 1606 TRRAP Transformation/transcription domain-associated protein yes no 2 2.5292E-08 98.249 By MS/MS By matching 1 1 0.89105 0.87099 8.1164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83822 0.92244 NaN 1 0 Median 0.9472 0.82241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3285000 1767500 1517500 0 0 0 0 0 0 2839200 1527000 1312200 445800 240500 205300 0 0 0 0 0 0 9183 991 9542 45600;45601 45526;45527 45527 2 FITLLLPGGAQTAVRPGSPSTSTMR DARPLRDVLAANPNRFITLLLPGGAQTAVR QTAVRPGSPSTSTMRLDLQFQAIKIISIIV R F I M R L 2 2 0 0 0 1 0 3 0 1 3 0 1 1 3 3 4 0 0 1 0 0 25 1 2557.3686 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1592 1616 TRRAP Transformation/transcription domain-associated protein yes no 3 4.102E-06 38.26 By MS/MS 1 0.58086 0.63837 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58086 0.63837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5637700 3382700 2255000 0 0 0 0 0 0 5637700 3382700 2255000 0 0 0 0 0 0 0 0 0 9184 991 9543 45602 45528;45529 45528 2 FITSSASDFSDPVYK TQQCKFDGQETKGSKFITSSASDFSDPVYK FITSSASDFSDPVYKEIAITNGCINRMSKE K F I Y K E 1 0 0 2 0 0 0 0 0 1 0 1 0 2 1 4 1 0 1 1 0 0 15 0 1662.7777 E5RIV7;Q8IV48 E5RIV7 53 67 ERI1 3-5 exoribonuclease 1 yes no 2 0.0014349 39.625 By MS/MS By MS/MS By matching 1 1 1 0.8995 0.82014 13.184 3 Median 0.78447 0.732 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8995 0.9521 NaN 1 0 Median 0.96527 0.82014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9653600 5040000 4613600 4400600 2511200 1889400 0 0 0 4997400 2403200 2594300 255580 125630 129950 0 0 0 0 0 0 9185 851 9544 45603;45604;45605 45530;45531;45532;45533 45532 4 FITYPFDQNR VKYCNSLPDIPFDPKFITYPFDQNRFVQYK PFDPKFITYPFDQNRFVQYKATSLEKQHKH K F I N R F 0 1 1 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 10 0 1299.6248 Q8N7H5 Q8N7H5 48 57 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.0083048 59.8 By MS/MS 1 0.66985 0.68367 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66985 0.68367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9309800 5086100 4223600 0 0 0 0 0 0 9309800 5086100 4223600 0 0 0 0 0 0 0 0 0 9186 3393 9545 45606 45534 45534 1 FIVCLNK VAKQLKQHQNTMEDKFIVCLNKVTKSFPPL HQNTMEDKFIVCLNKVTKSFPPLADRFMNA K F I N K V 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 892.48406 P78527 P78527 2360 2366 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.033294 62.338 By MS/MS 1 0.58403 0.62734 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58403 0.62734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6089200 3741200 2348000 0 0 0 0 0 0 6089200 3741200 2348000 0 0 0 0 0 0 0 0 0 9187 2647 9546 45607 45535 45535 1 FIVGSDR LWQGSLFNANYDVQRFIVGSDRAIFMLRDG NANYDVQRFIVGSDRAIFMLRDGSYAWEIK R F I D R A 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 7 0 792.413 Q14696 Q14696 150 156 MESDC2 LDLR chaperone MESD yes yes 2 0.047496 54.205 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9604000 0 9604000 2901300 0 2901300 0 0 0 6702700 0 6702700 0 0 0 0 0 0 0 0 0 9188 2895 9547 45608;45609 45536;45537 45537 2 FIVNTLK EEEQLSSNCVCQIHRFIVNTLKDGRRVVIL NCVCQIHRFIVNTLKDGRRVVILMELEVLK R F I L K D 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 7 0 833.50109 P27694;I3L2M5;I3L524 P27694 82 88 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.0034092 104.11 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 3 1.2151 1.1627 21.352 9 Median 0.9526 0.89256 NaN 1 0 Median 1.3736 1.1776 1.8109 2 0 Median 1.1829 1.2021 0.61809 2 0 Median 1.2597 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2151 1.0126 36.997 3 0 Median 40398000 19356000 21042000 14402000 7165700 7236700 7269000 3346200 3922800 13729000 6637500 7091500 2154200 961430 1192700 0 0 0 2843300 1245500 1597800 9189 2156 9548 45610;45611;45612;45613;45614;45615;45616;45617;45618 45538;45539;45540;45541;45542;45543 45540 6 FIVSPVPESR PTSSLTQVVHSAGRRFIVSPVPESRLRESK SAGRRFIVSPVPESRLRESKVFPSEITDTV R F I S R L 0 1 0 0 0 0 1 0 0 1 0 0 0 1 2 2 0 0 0 2 0 0 10 0 1129.6132 F5GWT4;Q9H4A3;H0YH68 F5GWT4 1011 1020 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 0.019982 37.191 By MS/MS 1 0.67568 0.56341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67568 0.56341 NaN 1 0 Median 1488100 834830 653240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1488100 834830 653240 9190 1001 9549 45619 45544 45544 1 FIVYSYK SPDELKDELPERQPRFIVYSYKYQHDDGRV ELPERQPRFIVYSYKYQHDDGRVSYPLCFI R F I Y K Y 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 2 1 0 0 7 0 918.48511 P60983 P60983 68 74 GMFB Glia maturation factor beta yes yes 2 0.021555 58.981 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.2498 1.093 172.31 6 Median 1.204 1.1335 18.508 2 0 Median 1.2851 1.1028 NaN 1 0 Median 1.1169 1.0833 NaN 1 0 Median 1.2155 0.98886 NaN 1 0 Median NaN NaN NaN 0 0 Median 82.489 73.519 NaN 1 0 Median 40130000 15764000 24366000 23590000 10799000 12792000 5079900 2202400 2877500 4524000 2082200 2441800 1443300 576410 866890 0 0 0 5492200 104410 5387800 9191 2534 9550 45620;45621;45622;45623;45624;45625 45545;45546;45547;45548;45549;45550 45547 6 FIYEAWQGVER SSSEIFTPAHEENVRFIYEAWQGVERDLRG ENVRFIYEAWQGVERDLRGQVPGGERGLVE R F I E R D 1 1 0 0 0 1 2 1 0 1 0 0 0 1 0 0 0 1 1 1 0 0 11 0 1396.6776 I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L2L5 34 44 FAM195B Protein FAM195B yes no 2 0.0022363 54.608 By MS/MS By matching By matching 1 1 1 1.2653 1.28 78.887 3 Median 0.8386 0.8189 NaN 1 0 Median 3.1182 3.7962 NaN 1 0 Median 1.2653 1.28 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6861300 3118000 3743400 2596800 1387500 1209300 1696600 585990 1110600 2567900 1144400 1423500 0 0 0 0 0 0 0 0 0 9192 708 9551 45626;45627;45628 45551 45551 1 FIYGNQDLFATSQSK QRSQLQGAMQQFNQRFIYGNQDLFATSQSK FIYGNQDLFATSQSKEFDPLGPLPPGWEKR R F I S K E 1 0 1 1 0 2 0 1 0 1 1 1 0 2 0 2 1 0 1 0 0 0 15 0 1717.8312 A0A590UK95;A0A590UK44;A0A590UJW8;A0A590UJQ1;Q96J02 A0A590UK95 377 391 ITCH E3 ubiquitin-protein ligase Itchy homolog yes no 2 0.00059806 48.004 By MS/MS 2 0.77678 0.86666 36.958 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77678 0.86666 36.958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7444000 3517900 3926100 0 0 0 0 0 0 7444000 3517900 3926100 0 0 0 0 0 0 0 0 0 9193 487 9552 45629;45630 45552;45553 45552 2 FKAEAPLPSPK KMYFPDVEFDIKSPKFKAEAPLPSPKLEGE KSPKFKAEAPLPSPKLEGELQAPDLELSLP K F K P K L 2 0 0 0 0 0 1 0 0 0 1 2 0 1 3 1 0 0 0 0 0 0 11 1 1183.6601 Q09666 Q09666 5102 5112 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00065076 87.184 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 4 1 0.73588 0.71762 18.316 7 Median 0.5805 0.63151 NaN 1 0 Median 0.73588 0.70183 NaN 1 0 Median 0.63292 0.71762 NaN 1 0 Median 0.79588 0.80857 25.388 3 1 Median NaN NaN NaN 0 0 Median 0.9577 0.85463 NaN 1 0 Median 39338000 20495000 18843000 5301700 3486100 1815600 7613500 4319300 3294200 10417000 5909000 4507600 13700000 5683500 8016300 0 0 0 2306100 1097000 1209100 9194 2749 9553 45631;45632;45633;45634;45635;45636;45637;45638 45554;45555;45556;45557;45558;45559;45560;45561;45562;45563 45559 10 FKASGVEGADVVK QSKIDEAILITWTKRFKASGVEGADVVKLL KRFKASGVEGADVVKLLNKAIKKRGDYDAN R F K V K L 2 0 0 1 0 0 1 2 0 0 0 2 0 1 0 1 0 0 0 3 0 0 13 1 1305.6929 P19367 P19367 175 187 HK1 Hexokinase-1 yes yes 2;3 0.0028742 79.693 By MS/MS 2 1.3729 1.448 9.2783 2 Median 1.3729 1.448 9.2783 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6813900 2979000 3834900 6813900 2979000 3834900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9195 2064 9554 45639;45640 45564;45565 45564 2 FKATISALEAK LKAKLQELEGAVKSKFKATISALEAKIGQL VKSKFKATISALEAKIGQLEEQLEQEAKER K F K A K I 3 0 0 0 0 0 1 0 0 1 1 2 0 1 0 1 1 0 0 0 0 0 11 1 1177.6707 P35580 P35580 1812 1822 MYH10 Myosin-10 yes yes 2 0.00083626 78.655 By MS/MS By matching By matching 1 1 1 1.0996 1.0572 24.788 3 Median 1.0996 1.0572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65183 0.69771 NaN 1 0 Median 1.2163 1.0854 NaN 1 0 Median 17840000 8457900 9382200 13160000 5820100 7339400 0 0 0 0 0 0 0 0 0 4092500 2401400 1691100 588020 236310 351710 9196 2245 9555 45641;45642;45643 45566;45567 45567 2 FKDDSNHTIGVEFGSK GTGKSCLLHQFIEKKFKDDSNHTIGVEFGS KDDSNHTIGVEFGSKIINVGGKYVKLQIWD K F K S K I 0 0 1 2 0 0 1 2 1 1 0 2 0 2 0 2 1 0 0 1 0 0 16 1 1779.8428 P20338 P20338 38 53 RAB4A Ras-related protein Rab-4A yes yes 3 4.2348E-05 54.281 By MS/MS By MS/MS 1 1 1.0426 1.0052 3.9188 2 Median 0.96222 0.97772 NaN 1 0 Median 1.1297 1.0334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18367000 8821100 9546200 15077000 7443900 7633400 3289900 1377100 1912800 0 0 0 0 0 0 0 0 0 0 0 0 9197 2077 9556 45644;45645 45568;45569;45570;45571 45571 4 FKDEQIDILVATDVAAR HGNLSQTQRLEALRRFKDEQIDILVATDVA DEQIDILVATDVAARGLDIEGVKTVINFTM R F K A R G 3 1 0 3 0 1 1 0 0 2 1 1 0 1 0 0 1 0 0 2 0 0 17 1 1903.0051 B7Z6D5;Q96GQ7 B7Z6D5 478 494 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.067514 9.4055 By MS/MS 1 0.83198 0.9218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83198 0.9218 NaN 1 0 Median NaN NaN NaN 0 0 Median 2113900 1111100 1002800 0 0 0 0 0 0 0 0 0 0 0 0 2113900 1111100 1002800 0 0 0 9198 635 9557 45646 45572 45572 1 FKDLGEEHFK GVFRRDTHKSEIAHRFKDLGEEHFKGLVLI EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP R F K F K G 0 0 0 1 0 0 2 1 1 0 1 2 0 2 0 0 0 0 0 0 0 0 10 1 1248.6139 CON__P02769 CON__P02769 35 44 yes yes 2;3 7.5573E-05 117.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 3 3 1 0.10184 0.10518 175.43 12 Median 0.082065 0.084777 234.96 3 3 Median 0.11952 0.11379 214.05 5 5 Median 0.056426 0.061082 65.741 2 2 Median 0.14667 0.12879 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.23078 0.2089 NaN 1 1 Median 416090000 413100000 2984500 171080000 170530000 558280 221340000 219530000 1806600 17011000 16584000 426240 5783200 5704100 79013 0 0 0 873120 758790 114340 + 9199 746 9558 45647;45648;45649;45650;45651;45652;45653;45654;45655;45656;45657;45658;45659;45660;45661;45662 45573;45574;45575;45576;45577;45578;45579;45580;45581;45582;45583;45584;45585;45586;45587;45588 45581 16 FKDPGLVDQLVK KGGDPALIRETQEKRFKDPGLVDQLVKADS EKRFKDPGLVDQLVKADSEWRRCRFRADNL R F K V K A 0 0 0 2 0 1 0 1 0 0 2 2 0 1 1 0 0 0 0 2 0 0 12 1 1357.7606 Q5T5C7;P49591 Q5T5C7 27 38 SARS Serine--tRNA ligase, cytoplasmic yes no 2;3 0.0010955 46.159 By MS/MS By matching By MS/MS By matching 1 1 2 3 1.1148 1.0644 6.746 7 Median 1.1148 1.05 NaN 1 0 Median 1.1452 1.087 NaN 1 0 Median 0.98827 1.0335 1.6038 2 0 Median 1.1289 1.1284 8.0307 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27215000 13191000 14024000 7134600 3246800 3887800 296330 123620 172710 14901000 7387800 7512900 4882900 2432700 2450200 0 0 0 0 0 0 9200 2387 9559 45663;45664;45665;45666;45667;45668;45669 45589;45590;45591 45590 3 FKDPNAPK EMKTYIPPKGETKKKFKDPNAPKRPPSAFF KGETKKKFKDPNAPKRPPSAFFLFCSEYRP K F K P K R 1 0 1 1 0 0 0 0 0 0 0 2 0 1 2 0 0 0 0 0 0 0 8 1 915.48142 P09429;Q5T7C4;B2RPK0;P23497 P09429 89 96 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 no no 2 0.01677 89.752 By matching By matching By MS/MS By MS/MS By matching 1 1 3 2 2 0.765 0.74385 6.8055 9 Median 0.73383 0.71084 NaN 1 0 Median 0.69022 0.63474 NaN 1 0 Median 0.765 0.76287 4.5276 3 0 Plateau 0.85414 0.75954 2.9523 2 0 Median NaN NaN NaN 0 0 Median 0.84405 0.72746 4.1412 2 0 Median 16871000 9047800 7822800 1381000 809750 571240 336570 198210 138370 7577300 4268900 3308400 6965800 3464600 3501200 0 0 0 609870 306340 303530 9201 1915;2114 9560 45670;45671;45672;45673;45674;45675;45676;45677;45678 45592;45593;45594;45595;45596 45596 5 FKEANNFLWPFK CMEDLIHEIYTVGKRFKEANNFLWPFKLSS GKRFKEANNFLWPFKLSSPRGGMKKKTTHF R F K F K L 1 0 2 0 0 0 1 0 0 0 1 2 0 3 1 0 0 1 0 0 0 0 12 1 1539.7874 P18124;A8MUD9 P18124 201 212 RPL7 60S ribosomal protein L7 yes no 2;3 0.00047068 91.584 By MS/MS By matching By matching By matching 3 2 2 2 0.97884 1.0044 28.501 9 Median 0.97551 0.94186 16.479 3 0 Median NaN NaN NaN 0 0 Median 0.86156 0.89687 16.019 2 0 Median 1.1584 1.028 2.3241 2 0 Median NaN NaN NaN 0 0 Median 1.6441 1.5039 38.203 2 0 Median 80360000 38775000 41585000 76015000 37156000 38859000 0 0 0 932960 494900 438060 733930 325000 408930 0 0 0 2677800 798970 1878800 9202 2056 9561 45679;45680;45681;45682;45683;45684;45685;45686;45687 45597;45598;45599;45600;45601 45600 5 FKEEFKPLSK QDQIGFQTFETVDVKFKEEFKPLSKELGEH TVDVKFKEEFKPLSKELGEHGKEILLSNSD K F K S K E 0 0 0 0 0 0 2 0 0 0 1 3 0 2 1 1 0 0 0 0 0 0 10 2 1251.6863 A0A0A0MRF6;Q99996;A0A0A0MRE9;A0A087WX84 A0A0A0MRF6 1521 1530 AKAP9 A-kinase anchor protein 9 yes no 3 0.01478 29.534 By MS/MS By matching 1 1 0.78736 0.87338 31.836 2 Median 0.59035 0.69733 NaN 1 0 Median 1.0501 1.0939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4457500 2334700 2122800 1883700 1142700 741050 2573800 1192000 1381700 0 0 0 0 0 0 0 0 0 0 0 0 9203 158 9562 45688;45689 45602 45602 1 FKEEGVRDVLK LYLINSPVVRAENLRFKEEGVRDVLKDVLL ENLRFKEEGVRDVLKDVLLPWYNAYRFLIQ R F K L K D 0 1 0 1 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 2 0 0 11 2 1318.7245 P41252;A0A0A0MSX9;J3KR24 P41252 640 650 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.0020016 44.847 By MS/MS By matching By matching By matching 1 2 1 2 1.5813 1.6802 72.82 6 Median 1.3195 1.4998 NaN 1 0 Median 0.96324 0.9896 83.989 2 0 Median 1.9824 2.6306 NaN 1 0 Median 2.5441 2.802 81.45 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44934000 22408000 22526000 6550000 2783800 3766200 32704000 18166000 14538000 1779400 668820 1110600 3900100 789160 3111000 0 0 0 0 0 0 9204 2302 9563 45690;45691;45692;45693;45694;45695 45603 45603 1 FKEEVNHYSNEINK HLGKDQRDFNMIDLKFKEEVNHYSNEINKA KFKEEVNHYSNEINKACMPFGLHRQFPENS K F K N K A 0 0 3 0 0 0 3 0 1 1 0 2 0 1 0 1 0 0 1 1 0 0 14 1 1749.8322 O95602;B9ZVN9 O95602 865 878 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3;4 0.00042078 49.298 By MS/MS By MS/MS By MS/MS 1 2 3 0.98536 1.0264 17.602 6 Median NaN NaN NaN 0 0 Median 0.80177 0.7755 NaN 1 0 Median 0.79473 0.91945 11.338 2 0 Median 1.2258 1.1522 7.2744 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30735000 15322000 15413000 0 0 0 3006200 1376100 1630100 22150000 11386000 10763000 5579200 2559200 3019900 0 0 0 0 0 0 9205 1781 9564 45696;45697;45698;45699;45700;45701 45604;45605;45606;45607;45608;45609;45610;45611 45610 8 FKEHVQNNLPR ILGIPTQLYSHHFQRFKEHVQNNLPRDLLT HFQRFKEHVQNNLPRDLLTGEQFIQLRREL R F K P R D 0 1 2 0 0 1 1 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 11 1 1380.7262 Q86UA1 Q86UA1 247 257 PRPF39 Pre-mRNA-processing factor 39 yes yes 3 0.049525 28.708 By MS/MS 1 1.0076 1.0109 NaN 1 Median NaN NaN NaN 0 0 Median 1.0076 1.0109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1037900 476460 561490 0 0 0 1037900 476460 561490 0 0 0 0 0 0 0 0 0 0 0 0 9206 3275 9565 45702 45612 45612 1 FKEIAEAYDVLSDPR RYHPDKNKEPGAEEKFKEIAEAYDVLSDPR FKEIAEAYDVLSDPRKREIFDRYGEEGLKG K F K P R K 2 1 0 2 0 0 2 0 0 1 1 1 0 1 1 1 0 0 1 1 0 0 15 1 1751.873 P25685 P25685 45 59 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2;3 8.3409E-05 71.555 By MS/MS By matching By MS/MS By matching By matching 1 1 3 1 1 0.93879 1.0057 14.36 7 Median 0.93879 1.0057 NaN 1 0 Median 1.0011 0.93444 NaN 1 0 Median 0.91281 1.0403 15.706 3 1 Plateau 1.0303 0.90834 NaN 1 0 Median 1.1701 1.2541 NaN 1 0 Median NaN NaN NaN 0 0 Median 29674000 15324000 14350000 4273900 2163700 2110100 456980 230810 226160 23720000 12343000 11377000 562790 285620 277170 659930 300470 359460 0 0 0 9207 2134 9566 45703;45704;45705;45706;45707;45708;45709 45613;45614;45615 45615 3 FKEIQNLIK EAVLLQLVADKDHPKFKEIQNLIKASAPES DKDHPKFKEIQNLIKASAPESGLLSKV___ K F K I K A 0 0 1 0 0 1 1 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 9 1 1131.6652 Q96CN7 Q96CN7 278 286 ISOC1 Isochorismatase domain-containing protein 1 yes yes 2 0.0038972 95.909 By MS/MS By matching By matching By matching 1 1 1 1 1.1007 1.0293 17.5 4 Median 1.0897 1.058 NaN 1 0 Median 1.1117 1.0013 NaN 1 0 Median 1.3242 1.3911 NaN 1 0 Median 1.0616 0.93215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23268000 11386000 11883000 15418000 7533100 7884800 5593300 2578400 3014900 1722900 986880 736010 534020 287100 246920 0 0 0 0 0 0 9208 3619 9567 45710;45711;45712;45713 45616;45617 45616 2 FKELSTLR DIQERRQQVLDRYHRFKELSTLRRQKLEDS VLDRYHRFKELSTLRRQKLEDSYRFQFFQR R F K L R R 0 1 0 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 1 992.56548 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 29 36 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.023495 78.516 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2057 1.1639 15.046 5 Median 1.4208 1.4508 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94683 1.1349 NaN 1 0 Median 1.1097 1.0523 14.254 2 0 Median NaN NaN NaN 0 0 Median 1.3492 1.1985 NaN 1 0 Median 23159000 11073000 12086000 2049000 819740 1229300 0 0 0 13292000 6887300 6404300 4817600 2080300 2737300 0 0 0 3000600 1285500 1715100 9209 264;2838 9568 45714;45715;45716;45717;45718 45618;45619;45620;45621 45619 4 FKEMELPAK SSFEEIEILWSQFLKFKEMELPAKEADKNR WSQFLKFKEMELPAKEADKNRSKGIYQSLE K F K A K E 1 0 0 0 0 0 2 0 0 0 1 2 1 1 1 0 0 0 0 0 0 0 9 1 1091.5685 Q15149;H0YDN1;E9PMV1 Q15149 461 469 PLEC Plectin yes no 2 0.0080894 78.516 By MS/MS 1 0.87027 0.94841 NaN 1 Median 0.87027 0.94841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8016300 4434100 3582200 8016300 4434100 3582200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9210 2933 9569 45719 45622;45623 45622 2 FKEPAHALAFQQK QSLQMLPQQRKAIAKFKEPAHALAFQQKFH AKFKEPAHALAFQQKFHRHMIDLSHINVAL K F K Q K F 3 0 0 0 0 2 1 0 1 0 1 2 0 2 1 0 0 0 0 0 0 0 13 1 1513.8041 Q96EV2;H0Y3K3;A0A0C4DFS3 Q96EV2 1140 1152 RBM33 RNA-binding protein 33 yes no 3 0.020003 34.898 By MS/MS 1 0.82244 0.94107 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82244 0.94107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349900 1163100 1186800 0 0 0 0 0 0 2349900 1163100 1186800 0 0 0 0 0 0 0 0 0 9211 3642 9570 45720 45624 45624 1 FKEQLTPSQIMSLEK AYRAEWQVYKEEISRFKEQLTPSQIMSLEK FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK R F K E K E 0 0 0 0 0 2 2 0 0 1 2 2 1 1 1 2 1 0 0 0 0 0 15 1 1777.9284 Q00059;H7BYN3 Q00059 117 131 TFAM Transcription factor A, mitochondrial yes no 2;3 4.0492E-09 111.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 3 0.93757 0.9494 14.806 11 Median 0.9474 0.96255 1.6792 2 0 Median NaN NaN NaN 0 0 Median 0.92163 0.91473 3.0783 2 0 Median 1.1765 1.0608 NaN 1 0 Median 0.92627 1.0005 5.8165 3 0 Plateau 1.05 0.88563 26.196 3 0 Median 247790000 125480000 122310000 46253000 23602000 22651000 0 0 0 92625000 46581000 46044000 16979000 7577900 9400900 78918000 40706000 38212000 13011000 7009800 6000700 9212 2673 9571;9572 45721;45722;45723;45724;45725;45726;45727;45728;45729;45730;45731 45625;45626;45627;45628;45629;45630;45631;45632;45633;45634;45635;45636;45637;45638;45639;45640 45636 1350 16 FKESFAEMNR SSLSMDEKVELYRIKFKESFAEMNRGSNEW LYRIKFKESFAEMNRGSNEWKTVVGGAMFF K F K N R G 1 1 1 0 0 0 2 0 0 0 0 1 1 2 0 1 0 0 0 0 0 0 10 1 1257.5812 P13073;H3BPG0;H3BN72;H3BNV9 P13073 86 95 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2;3 1.8952E-05 155.84 By MS/MS By MS/MS By MS/MS 2 3 2 1.1055 1.082 20.634 7 Median 0.96942 0.95015 18.38 2 1 Median 1.3546 1.1954 16.085 3 1 Median 0.89416 0.92932 11.919 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129380000 62696000 66680000 77130000 39974000 37156000 38083000 15306000 22777000 14163000 7416500 6746600 0 0 0 0 0 0 0 0 0 9213 1988 9573 45732;45733;45734;45735;45736;45737;45738 45641;45642;45643;45644;45645;45646;45647;45648 45648 8 FKETERPSIK DRDLLYSIDAYRSQRFKETERPSIKQVIVR YRSQRFKETERPSIKQVIVRKEDVTSKLDE R F K I K Q 0 1 0 0 0 0 2 0 0 1 0 2 0 1 1 1 1 0 0 0 0 0 10 2 1233.6717 Q9NQW6;H7C1K5 Q9NQW6 681 690 ANLN Actin-binding protein anillin yes no 3 0.067344 14.679 By matching By MS/MS By matching 1 2 1 0.78458 1.0338 14.316 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96292 1.0972 NaN 1 0 Median 0.74391 0.84782 0 2 0 Median NaN NaN NaN 0 0 Median 0.82747 0.79424 NaN 1 0 Median 3360400 1777100 1583300 0 0 0 0 0 0 1559100 848980 710120 1571400 817840 753610 0 0 0 229880 110320 119560 9214 4069 9574 45739;45740;45741;45742 45649 45649 1 FKETNDKAELDR FQYGIKMSEGRKTRRFKETNDKAELDRQWK TRRFKETNDKAELDRQWKKISAIIEKRKKM R F K D R Q 1 1 1 2 0 0 2 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 12 2 1464.7209 Q13123 Q13123 519 530 IK Protein Red yes yes 2;3 0.00020198 83 By matching By MS/MS By matching By MS/MS 1 2 1 1 1.0099 1.1517 12.233 5 Median 0.85179 0.93818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0449 1.1917 4.8233 2 0 Median 1.1942 1.2765 NaN 1 0 Median 0.91283 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median 11526000 5272800 6253100 339890 161760 178130 0 0 0 8340300 3667600 4672800 239050 99359 139690 2606600 1344100 1262500 0 0 0 9215 2787 9575 45743;45744;45745;45746;45747 45650;45651;45652;45653 45650 4 FKGFDPNQLSVATLLFEGDR FTSFLDGLKKFYITKFKGFDPNQLSVATLL PNQLSVATLLFEGDREKVLQHEKQVYDIAA K F K D R E 1 1 1 2 0 1 1 2 0 0 3 1 0 3 1 1 1 0 0 1 0 0 20 1 2253.143 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 455 474 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3;4 0.028113 21.803 By MS/MS 2 1.294 1.3063 44.496 2 Median 1.294 1.3063 44.496 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11550000 4386200 7163700 11550000 4386200 7163700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9216 1439 9576 45748;45749 45654;45655 45655 2 FKGPEFVR ELGKDKWLCPLSGKKFKGPEFVRKHIFNKH CPLSGKKFKGPEFVRKHIFNKHAEKIEEVK K F K V R K 0 1 0 0 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 1 0 0 8 1 978.5287 Q9BXP5;H7C3A1 Q9BXP5 722 729 SRRT Serrate RNA effector molecule homolog yes no 2 0.037235 65.252 By MS/MS By MS/MS 1 1 1.1293 1.1798 14.811 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93547 1.0625 NaN 1 0 Median 1.3632 1.3101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6378600 3040700 3337900 0 0 0 0 0 0 3808700 2023300 1785400 2569900 1017400 1552500 0 0 0 0 0 0 9217 3879 9577 45750;45751 45656;45657;45658 45656 3 FKGPFTDVVTTNLK KHEQILVLDPPTDLKFKGPFTDVVTTNLKL KFKGPFTDVVTTNLKLRNPSDRKVCFKVKT K F K L K L 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 0 3 0 0 2 0 0 14 1 1565.8453 Q9P0L0 Q9P0L0 25 38 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2;3 0.00019073 85.288 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 3 3 2 3 1.109 1.038 38.619 14 Median 1.0152 0.98524 7.1987 2 0 Median 1.1521 1.0381 NaN 1 0 Median 0.98372 0.98182 36.295 3 1 Median 1.3625 1.1964 32.63 3 0 Median 0.56975 0.63888 78.477 2 0 Median 1.2555 1.0729 6.3251 3 0 Median 54485000 27888000 26597000 34214000 17587000 16627000 690260 308130 382130 11791000 6543100 5247400 1154200 447220 706960 5700900 2640100 3060800 935230 362690 572540 9218 4205 9578 45752;45753;45754;45755;45756;45757;45758;45759;45760;45761;45762;45763;45764;45765 45659;45660;45661;45662;45663;45664;45665;45666;45667;45668;45669;45670 45664 12 FKGQILMPNIGYGSNK NWRKPRGIDNRVRRRFKGQILMPNIGYGSN KGQILMPNIGYGSNKKTKHMLPSGFRKFLV R F K N K K 0 0 2 0 0 1 0 3 0 2 1 2 1 1 1 1 0 0 1 0 0 0 16 1 1765.9185 D3YTB1;F8W727;P62910 D3YTB1 49 64 RPL32 60S ribosomal protein L32 yes no 2;3 4.2441E-06 87.001 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 1 1.0179 1.0316 17.995 8 Median 0.94706 0.94236 14.658 3 0 Median 0.9914 0.87655 8.806 2 0 Median NaN NaN NaN 0 0 Median 1.4208 1.277 NaN 1 0 Median 0.98216 1.1292 NaN 1 0 Median 1.5994 1.3491 NaN 1 0 Median 105770000 53239000 52532000 86598000 44393000 42205000 5573400 2643800 2929700 0 0 0 415140 190080 225060 10027000 4891700 5135100 3158600 1121000 2037600 9219 798 9579 45766;45767;45768;45769;45770;45771;45772;45773 45671;45672;45673;45674;45675;45676;45677;45678;45679;45680 45675 10 FKGQILMPNIGYGSNKK NWRKPRGIDNRVRRRFKGQILMPNIGYGSN GQILMPNIGYGSNKKTKHMLPSGFRKFLVH R F K K K T 0 0 2 0 0 1 0 3 0 2 1 3 1 1 1 1 0 0 1 0 0 0 17 2 1894.0135 D3YTB1;F8W727;P62910 D3YTB1 49 65 RPL32 60S ribosomal protein L32 yes no 2;3;4 2.0741E-11 128.54 By MS/MS By MS/MS By matching By MS/MS 5 3 1 3 0.96047 0.97982 17.288 12 Median 0.93929 1.0172 7.7075 5 2 Median 1.04 0.93843 4.5804 3 0 Plateau 0.96504 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88622 1.0016 31.544 3 1 Median NaN NaN NaN 0 0 Median 188890000 95612000 93276000 155210000 78745000 76467000 5264800 2509100 2755700 4855100 2090200 2764900 0 0 0 23557000 12268000 11289000 0 0 0 9220 798 9580;9581 45774;45775;45776;45777;45778;45779;45780;45781;45782;45783;45784;45785 45681;45682;45683;45684;45685;45686;45687;45688;45689;45690;45691;45692;45693;45694 45688 300 14 FKIPGSPPESMGR GESASITPLEDLYKRFKIPGSPPESMGRGR KRFKIPGSPPESMGRGRDWNVDLIPKFLMA R F K G R G 0 1 0 0 0 0 1 2 0 1 0 1 1 1 3 2 0 0 0 0 0 0 13 1 1401.7075 P50395;Q5SX87;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395 56 68 GDI2 Rab GDP dissociation inhibitor beta yes no 2;3 7.7725E-05 79.875 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 0.67313 0.62773 20.085 9 Median 0.65077 0.64834 17.892 3 0 Median 0.67985 0.62134 1.4475 2 0 Median 0.51694 0.52376 38.327 2 1 Median 0.66411 0.63606 8.5632 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62057000 36960000 25097000 26632000 15719000 10913000 3711500 2206700 1504800 17145000 10196000 6948600 14568000 8837700 5730500 0 0 0 0 0 0 9221 2411 9582 45786;45787;45788;45789;45790;45791;45792;45793;45794 45695;45696;45697;45698;45699;45700;45701;45702;45703 45703 9 FKKEDEIPETVSLEMLDAAK KPTDWQKKILIWSGRFKKEDEIPETVSLEM EIPETVSLEMLDAAKNKMRVKISYLMIALT R F K A K N 2 0 0 2 0 0 4 0 0 1 2 3 1 1 1 1 1 0 0 1 0 0 20 2 2292.1559 Q96A26;F8W7Q4;E9PH05 Q96A26 77 96 FAM162A Protein FAM162A yes no 3 0.00062886 28.202 By MS/MS By MS/MS 1 1 0.91483 1.0024 11.755 2 Median 1.0058 1.0893 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83205 0.92244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12983000 6787100 6195600 3506700 1869500 1637200 0 0 0 9476000 4917600 4558400 0 0 0 0 0 0 0 0 0 9222 1085 9583 45795;45796 45704;45705;45706 45705 3 FKLGLDFPNLPYLIDGTHK GDAPDYDRSQWLNEKFKLGLDFPNLPYLID LDFPNLPYLIDGTHKITQSNAILRYIARKH K F K H K I 0 0 1 2 0 0 0 2 1 1 4 2 0 2 2 0 1 0 1 0 0 0 19 1 2187.1728 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7 E9PHN7 51 69 GSTM2 Glutathione S-transferase Mu 2 yes no 3 0.007747 23.726 By MS/MS 1 0.97272 0.89301 NaN 1 Median NaN NaN NaN 0 0 Median 0.97272 0.89301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 642270 301370 340900 0 0 0 642270 301370 340900 0 0 0 0 0 0 0 0 0 0 0 0 9223 935 9584 45797 45707 45707 1 FKLQDVADSFK DFADGERKVEHLAVRFKLQDVADSFKKIFD LAVRFKLQDVADSFKKIFDEAKTAQEKDSL R F K F K K 1 0 0 2 0 1 0 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 11 1 1296.6714 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2423 2433 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2;3 0.0037735 38.021 By MS/MS 2 0.91972 1.0441 4.2678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91972 1.0441 4.2678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12735000 7198700 5536300 0 0 0 0 0 0 12735000 7198700 5536300 0 0 0 0 0 0 0 0 0 9224 2401;525;3762 9585 45798;45799 45708;45709 45709 2 FKLQDVADSFKK DFADGERKVEHLAVRFKLQDVADSFKKIFD AVRFKLQDVADSFKKIFDEAKTAQEKDSLI R F K K K I 1 0 0 2 0 1 0 0 0 0 1 3 0 2 0 1 0 0 0 1 0 0 12 2 1424.7664 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2423 2434 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 3 0.00020198 67.519 By MS/MS By matching 3 1 1.0033 1.2192 18.488 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0237 1.2208 0.53415 3 0 Median NaN NaN NaN 0 0 Median 0.72178 0.84491 NaN 1 0 Median NaN NaN NaN 0 0 Median 47079000 24019000 23060000 0 0 0 0 0 0 44542000 22500000 22043000 0 0 0 2536700 1519300 1017400 0 0 0 9225 2401;525;3762 9586 45800;45801;45802;45803 45710;45711;45712 45711 3 FKLWYTLDR LRPELEELRNKHSARFKLWYTLDRAPEAWD NKHSARFKLWYTLDRAPEAWDYGQGFVNEE R F K D R A 0 1 0 1 0 0 0 0 0 0 2 1 0 1 0 0 1 1 1 0 0 0 9 1 1240.6604 P00387 P00387 233 241 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes yes 2;3 0.019351 48.796 By MS/MS By matching 2 2 1.1846 1.1273 18.549 4 Median 1.0975 1.0975 15.078 2 0 Median 1.3481 1.2456 25.388 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20753000 10378000 10375000 19138000 9676300 9462100 1614700 702010 912740 0 0 0 0 0 0 0 0 0 0 0 0 9226 1816 9587 45804;45805;45806;45807 45713;45714;45715 45714 3 FKMPDMHFK DVELECPDAKLKGPKFKMPDMHFKAPKISM KLKGPKFKMPDMHFKAPKISMPDVDLHLKG K F K F K A 0 0 0 1 0 0 0 0 1 0 0 2 2 2 1 0 0 0 0 0 0 0 9 1 1179.5569 Q09666 Q09666 1910 1918 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.037255 50.607 By matching By MS/MS 1 1 1.1766 1.3085 11.685 2 Median 1.1064 1.2048 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2513 1.4213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23304000 10616000 12688000 19026000 8806400 10220000 0 0 0 4277800 1809900 2467900 0 0 0 0 0 0 0 0 0 9227 2749 9588 45808;45809 45716 45716 1 FKMPEMHFK DVSLEGPEGKLKGPKFKMPEMHFKTPKISM KLKGPKFKMPEMHFKTPKISMPDVDLHLKG K F K F K T 0 0 0 0 0 0 1 0 1 0 0 2 2 2 1 0 0 0 0 0 0 0 9 1 1193.5726 Q09666 Q09666 1183 1191 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 0.0046165 69.598 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 6 4 2 1 1.0398 1.046 17.858 13 Median 1.1084 1.2019 29.728 2 0 Median 1.0627 1.0147 19.293 5 0 Median 1.0398 1.1925 14.402 3 0 Median 1.0562 1.073 3.6098 2 0 Median NaN NaN NaN 0 0 Median 0.98254 0.87679 NaN 1 0 Median 143210000 56733000 86475000 59082000 23975000 35107000 35594000 12202000 23392000 32195000 12830000 19366000 15931000 7531200 8400000 0 0 0 405380 195760 209620 9228 2749 9589;9590;9591 45810;45811;45812;45813;45814;45815;45816;45817;45818;45819;45820;45821;45822;45823;45824;45825 45717;45718;45719;45720;45721;45722;45723;45724;45725;45726;45727 45727 1430;1431 11 FKMPEMHFR DLSLEGPEGKLKGPKFKMPEMHFRAPKMSL KLKGPKFKMPEMHFRAPKMSLPDVDLDLKG K F K F R A 0 1 0 0 0 0 1 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 9 1 1221.5787 Q09666 Q09666 1055 1063 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0017471 57.55 By MS/MS By MS/MS By matching 2 1 1 1.0433 1.0852 9.1842 4 Median 0.99287 1.0227 3.0744 2 0 Median NaN NaN NaN 0 0 Median 1.0657 1.2338 NaN 1 0 Median 1.2097 1.1268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16893000 8437500 8456000 11424000 5999300 5424800 0 0 0 5306400 2374000 2932400 162980 64190 98793 0 0 0 0 0 0 9229 2749 9592 45826;45827;45828;45829 45728;45729;45730 45728 3 FKMPEMNIK DVSIEEPEGKLKGPKFKMPEMNIKVPKISM KLKGPKFKMPEMNIKVPKISMPDVDLHLKG K F K I K V 0 0 1 0 0 0 1 0 0 1 0 2 2 1 1 0 0 0 0 0 0 0 9 1 1136.5722 Q09666 Q09666 806 814 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0020838 127.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 5 1 1 0.95575 1.001 26.324 16 Median 0.94293 1.0246 6.5246 3 0 Median 0.90981 0.8699 28.473 3 0 Median 1.0297 1.1705 10.041 3 0 Median 0.97834 0.99393 9.2097 5 0 Median 0.72357 0.78077 NaN 1 0 Median 0.48345 0.43142 NaN 1 0 Median 394440000 191800000 202640000 195420000 91663000 103760000 34632000 19587000 15044000 119610000 57789000 61816000 33162000 16631000 16531000 10644000 5569600 5074500 970990 554870 416120 9230 2749 9593;9594;9595 45830;45831;45832;45833;45834;45835;45836;45837;45838;45839;45840;45841;45842;45843;45844;45845 45731;45732;45733;45734;45735;45736;45737;45738;45739;45740;45741;45742;45743;45744;45745;45746;45747;45748 45739 1432;1433 18 FKMPEMSIKPQK DVNIEGPDAKLKGPKFKMPEMSIKPQKISI GPKFKMPEMSIKPQKISIPDVGLHLKGPKM K F K Q K I 0 0 0 0 0 1 1 0 0 1 0 3 2 1 2 1 0 0 0 0 0 0 12 2 1462.7676 Q09666 Q09666 1439 1450 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0013738 44.193 By MS/MS By MS/MS By matching 1 1 1 0.68634 0.81071 59.701 3 Median 0.68634 0.81071 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69601 0.86414 NaN 1 0 Median 0.31038 0.29805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27331000 16417000 10914000 14331000 8494900 5836000 0 0 0 9907900 5605300 4302500 3092200 2316700 775460 0 0 0 0 0 0 9231 2749 9596 45846;45847;45848 45749;45750;45751 45751 3 FKMPFLSISSPK NAPDVEVQGKVKGSKFKMPFLSISSPKVSM GSKFKMPFLSISSPKVSMPDVELNLKSPKV K F K P K V 0 0 0 0 0 0 0 0 0 1 1 2 1 2 2 3 0 0 0 0 0 0 12 1 1380.7475 Q09666 Q09666 3403 3414 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00050684 56.043 By MS/MS By MS/MS By matching 2 3 1 0.91434 1.0025 10.309 6 Median 0.86317 0.93572 13.965 2 0 Median NaN NaN NaN 0 0 Median 0.92977 1.0556 7.2963 3 0 Median 0.89917 0.9135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25506000 13197000 12310000 6897800 3487800 3410000 0 0 0 18007000 9463800 8543600 600890 245030 355860 0 0 0 0 0 0 9232 2749 9597;9598 45849;45850;45851;45852;45853;45854 45752;45753;45754;45755;45756 45756 1434 5 FKMPSMNIQTHK DVNLEAPEGKLKGPKFKMPSMNIQTHKISM GPKFKMPSMNIQTHKISMPDVGLNLKAPKL K F K H K I 0 0 1 0 0 1 0 0 1 1 0 2 2 1 1 1 1 0 0 0 0 0 12 1 1460.7268 Q09666 Q09666 1567 1578 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 1.7869E-06 98.407 By MS/MS By MS/MS 1 1 1.2347 1.3722 10.305 2 Median 1.1714 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3015 1.4759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24841000 8802500 16038000 15123000 6028800 9094200 0 0 0 9717700 2773700 6944000 0 0 0 0 0 0 0 0 0 9233 2749 9599 45855;45856 45757;45758 45758 2 FKNEEEVFAWNNEVK IAHTETFAPILYVFKFKNEEEVFAWNNEVK FKNEEEVFAWNNEVKQGLSSSIFTKDLGRI K F K V K Q 1 0 3 0 0 0 4 0 0 0 0 2 0 2 0 0 0 1 0 2 0 0 15 1 1881.8897 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49 P49419 438 452 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 3 0.037586 15.99 By MS/MS By matching By matching By matching 1 1 2 1 0.92007 0.96561 25.415 5 Median 0.78075 0.748 NaN 1 0 Median 1.2383 1.1666 NaN 1 0 Median 0.76744 0.8049 25.745 2 0 Median 1.1689 1.1684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17812000 9315600 8496000 7135200 3612900 3522300 1369000 649880 719080 8964200 4930200 4034100 343200 122650 220550 0 0 0 0 0 0 9234 318 9600 45857;45858;45859;45860;45861 45759 45759 1 FKNELER KSTVVKAISGVHTVRFKNELERNITIKLGY ISGVHTVRFKNELERNITIKLGYANAKIYK R F K E R N 0 1 1 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 934.48723 P41091;Q2VIR3;H7BZU1 P41091 69 75 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.055922 79.469 By matching By MS/MS By matching By matching 1 1 3 1 1.2245 1.2404 19.297 6 Median 1.1786 1.1973 NaN 1 0 Median 1.141 1.0415 NaN 1 0 Median 1.4203 1.4923 15.238 3 0 Median 1.1809 1.1081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13510000 5880900 7628900 1106600 426620 679930 6597200 2963900 3633300 5068500 2166000 2902500 737470 324290 413180 0 0 0 0 0 0 9235 2295 9601 45862;45863;45864;45865;45866;45867 45760 45760 1 FKNTEAIGNEVTR AWSISPYLAVQLPARFKNTEAIGNEVTRLV ARFKNTEAIGNEVTRLVRLDPGAVSDVPEA R F K T R L 1 1 2 0 0 0 2 1 0 1 0 1 0 1 0 0 2 0 0 1 0 0 13 1 1477.7525 P42356 P42356 1562 1574 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 3 0.022307 35.037 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9236 2311 9602 45868 45761 45761 1 FKPGVISEELQDALGVTDK QQRYHAEEVEERFGRFKPGVISEELQDALG VISEELQDALGVTDKSLPPFIYRMRQLGYP R F K D K S 1 0 0 2 0 1 2 2 0 1 2 2 0 1 1 1 1 0 0 2 0 0 19 1 2045.0681 F5H6J5;F5GX80;Q6NZY4 F5H6J5 48 66 ZCCHC8 Zinc finger CCHC domain-containing protein 8 yes no 3 0.06793 8.4943 By MS/MS By matching 1 1 1.0449 1.0592 27.891 2 Median 0.8192 0.86962 NaN 1 0 Median 1.3327 1.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6859600 3000200 3859400 680700 373970 306720 6178900 2626300 3552700 0 0 0 0 0 0 0 0 0 0 0 0 9237 1006 9603 45869;45870 45762 45762 1 FKPGYLEATLNWFR DPEASKFHDIDDVKKFKPGYLEATLNWFRL KFKPGYLEATLNWFRLYKVPDGKPENQFAF K F K F R L 1 1 1 0 0 0 1 1 0 0 2 1 0 2 1 0 1 1 1 0 0 0 14 1 1740.8988 Q9H2U2;D6R967;H0Y9D8 Q9H2U2 226 239 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 2 0.062509 32.008 By MS/MS 1 1.4576 1.3296 NaN 1 Median NaN NaN NaN 0 0 Median 1.4576 1.3296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1262500 485940 776570 0 0 0 1262500 485940 776570 0 0 0 0 0 0 0 0 0 0 0 0 9238 3947 9604 45871 45763 45763 1 FKPLSDKIQQQR SRIIEPLTSRCSKFRFKPLSDKIQQQRLLD KFRFKPLSDKIQQQRLLDIAKKENVKISDE R F K Q R L 0 1 0 1 0 3 0 0 0 1 1 2 0 1 1 1 0 0 0 0 0 0 12 2 1486.8256 P35249;C9JZI1;C9J8M3 P35249 199 210 RFC4 Replication factor C subunit 4 yes no 3 0.0031519 37.426 By MS/MS By MS/MS 1 1 1.0853 1.1169 22.594 2 Median 0.89918 0.95201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.31 1.3104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2379300 1142000 1237300 1173300 532220 641060 0 0 0 0 0 0 1206100 609830 596230 0 0 0 0 0 0 9239 2237 9605 45872;45873 45764;45765;45766;45767 45765 4 FKPPPPNSDIGWR DHFENIQSTNWQTMRFKPPPPNSDIGWRVE MRFKPPPPNSDIGWRVEFRPMEVQLTDFEN R F K W R V 0 1 1 1 0 0 0 1 0 1 0 1 0 1 4 1 0 1 0 0 0 0 13 1 1509.7728 B4E2I4;E1CEI4;A0A2R8YEL6;P48506;A0A2R8Y648 B4E2I4 358 370 GCLC Glutamate--cysteine ligase catalytic subunit yes no 2;3 0.0002911 72.705 By MS/MS 2 2.1914 2.1971 184.95 2 Median 2.1914 2.1971 184.95 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37698000 7509400 30189000 37698000 7509400 30189000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9240 399 9606 45874;45875 45768;45769 45769 2 FKPSSLPHPLEGSR PRCKFVWGPQDKLRRFKPSSLPHPLEGSRK RFKPSSLPHPLEGSRKVEEEGSPGDPDHEA R F K S R K 0 1 0 0 0 0 1 1 1 0 2 1 0 1 3 3 0 0 0 0 0 0 14 1 1550.8205 Q9NZT2;A0A0A0MRN5;A0A087X028 Q9NZT2 295 308 OGFR Opioid growth factor receptor yes no 3 0.037555 27.649 By MS/MS 1 0.48475 0.49372 NaN 1 Median 0.48475 0.49372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1390300 927580 462680 1390300 927580 462680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9241 166 9607 45876 45770 45770 1 FKQESTVATER RNRRIFGLLMGTLQKFKQESTVATERQKRR TLQKFKQESTVATERQKRRQEIEQKLEVQA K F K E R Q 1 1 0 0 0 1 2 0 0 0 0 1 0 1 0 1 2 0 0 1 0 0 11 1 1294.6517 Q9H307 Q9H307 156 166 PNN Pinin yes yes 2;3 0.00092477 75.378 By MS/MS By MS/MS 4 6 1.2434 1.2591 20.134 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1092 1.2591 8.269 4 0 Median 1.3855 1.2398 26.022 6 0 Median 20637000 9998200 10639000 0 0 0 0 0 0 0 0 0 0 0 0 15064000 7494200 7569700 5573200 2504100 3069200 9242 3950 9608 45877;45878;45879;45880;45881;45882;45883;45884;45885;45886 45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782 45774 12 FKSDQNLQTALELTR RARACWVLHYFCEVKFKSDQNLQTALELTR FKSDQNLQTALELTRRCLIDDREMPVKVEA K F K T R R 1 1 1 1 0 2 1 0 0 0 3 1 0 1 0 1 2 0 0 0 0 0 15 1 1762.9214 O95373 O95373 488 502 IPO7 Importin-7 yes yes 3 0.00078454 52.823 By MS/MS 1 0.67225 0.70032 NaN 1 Median 0.67225 0.70032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10198000 5638800 4559600 10198000 5638800 4559600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9243 1768 9609 45887 45783 45783 1 FKTHNEHLAGVLK PIQRRKKPASQKKRRFKTHNEHLAGVLKDY RRFKTHNEHLAGVLKDYSDITSSK______ R F K L K D 1 0 1 0 0 0 1 1 2 0 2 2 0 1 0 0 1 0 0 1 0 0 13 1 1492.815 P29084 P29084 270 282 GTF2E2 Transcription initiation factor IIE subunit beta yes yes 3 0.020448 34.768 By MS/MS 1 1.148 1.008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.148 1.008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1851600 677060 1174500 0 0 0 0 0 0 0 0 0 1851600 677060 1174500 0 0 0 0 0 0 9244 2168 9610 45888 45784 45784 1 FKTPEEAALFK DYADELPKPEQLAIRFKTPEEAALFKCKFE LAIRFKTPEEAALFKCKFEEAQSILKAPGT R F K F K C 2 0 0 0 0 0 2 0 0 0 1 2 0 2 1 0 1 0 0 0 0 0 11 1 1279.6812 P49792 P49792 1285 1295 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 4.2536E-05 97.734 By matching By MS/MS By matching 1 3 2 0.96754 0.97154 132.33 6 Median NaN NaN NaN 0 0 Median 1.0147 0.96387 NaN 1 0 Median 0.86524 0.99889 186.92 3 1 Median 0.98579 0.95806 3.0977 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 348340000 32092000 316240000 0 0 0 1243600 701510 542110 346490000 31088000 315400000 602020 302680 299340 0 0 0 0 0 0 9245 2401 9611 45889;45890;45891;45892;45893;45894 45785;45786;45787;45788;45789;45790;45791 45787 7 FKTPELAEEFK DFSDGDAKLEQLAAKFKTPELAEEFKQKFE LAAKFKTPELAEEFKQKFEECQRLLLDIPL K F K F K Q 1 0 0 0 0 0 3 0 0 0 1 2 0 2 1 0 1 0 0 0 0 0 11 1 1337.6867 P49792;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2126 2136 RANBP2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2;3 7.8389E-05 73.632 By MS/MS 3 0.92262 1.0468 12.586 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92262 1.0468 12.586 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18911000 9667600 9243400 0 0 0 0 0 0 18911000 9667600 9243400 0 0 0 0 0 0 0 0 0 9246 2401;525;3762 9612 45895;45896;45897 45792;45793;45794 45792 3 FKTPELAEEFKQK DFSDGDAKLEQLAAKFKTPELAEEFKQKFE AKFKTPELAEEFKQKFEECQRLLLDIPLQT K F K Q K F 1 0 0 0 0 1 3 0 0 0 1 3 0 2 1 0 1 0 0 0 0 0 13 2 1593.8403 P49792;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2126 2138 RANBP2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 3 0.0081805 28.297 By MS/MS 1 0.63182 0.78445 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63182 0.78445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7542400 4502300 3040100 0 0 0 0 0 0 7542400 4502300 3040100 0 0 0 0 0 0 0 0 0 9247 2401;525;3762 9613 45898 45795 45795 1 FKVESEQQYFEIEKR DQQSEIDGLKGRHEKFKVESEQQYFEIEKR FKVESEQQYFEIEKRLSHSQERLVNETREC K F K K R L 0 1 0 0 0 2 4 0 0 1 0 2 0 2 0 1 0 0 1 1 0 0 15 2 1958.9738 P12270;Q5SWX9 P12270 46 60 TPR Nucleoprotein TPR yes no 3 9.2821E-25 147.1 By MS/MS By MS/MS 1 2 0.81661 1.0308 12.408 3 Plateau 0.80765 0.85374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79646 1.0546 3.2209 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50281000 25321000 24960000 9034000 4680500 4353500 0 0 0 41247000 20641000 20606000 0 0 0 0 0 0 0 0 0 9248 1978 9614 45899;45900;45901 45796;45797;45798 45798 3 FKVEYHAGGSTQNSIK AEDKHKELFDELVKKFKVEYHAGGSTQNSI KVEYHAGGSTQNSIKVAQWMIQQPHKAATF K F K I K V 1 0 1 0 0 1 1 2 1 1 0 2 0 1 0 2 1 0 1 1 0 0 16 1 1764.8795 P55263 P55263 73 88 ADK Adenosine kinase yes yes 3 0.060493 19.819 By MS/MS 1 0.21543 0.19407 NaN 1 Median NaN NaN NaN 0 0 Median 0.21543 0.19407 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11854000 9897900 1955700 0 0 0 11854000 9897900 1955700 0 0 0 0 0 0 0 0 0 0 0 0 9249 2497 9615 45902 45799 45799 1 FKVNLDSEQAVKEEK GNMMSNFFGKAAMNKFKVNLDSEQAVKEEK FKVNLDSEQAVKEEKIVEQPTVSVTEPKLA K F K E K I 1 0 1 1 0 1 3 0 0 0 1 3 0 1 0 1 0 0 0 2 0 0 15 2 1762.9101 Q15054 Q15054 247 261 POLD3 DNA polymerase delta subunit 3 yes yes 3 0.0025363 32.815 By MS/MS 1 0.83404 0.8511 NaN 1 Median 0.83404 0.8511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4175800 2156900 2018900 4175800 2156900 2018900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9250 2921 9616 45903 45800 45800 1 FKYDDAER MATNFLAHEKIWFDKFKYDDAERRFYEQMN EKIWFDKFKYDDAERRFYEQMNGPVAGASR K F K E R R 1 1 0 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 8 1 1042.472 E9PL71;E9PN91;E9PKK3;E9PNW6;E9PJD0;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 16 23 EEF1D Elongation factor 1-delta no no 2 0.021016 81.548 By matching By MS/MS 1 1 1.2513 1.2752 21.086 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3451 1.4802 NaN 1 0 Median 1.1641 1.0985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12929000 5765000 7163500 0 0 0 0 0 0 1513200 642660 870550 11415000 5122400 6293000 0 0 0 0 0 0 9251 985;2174;957 9617 45904;45905 45801;45802 45802 2 FKYDDAERR MATNFLAHEKIWFDKFKYDDAERRFYEQMN KIWFDKFKYDDAERRFYEQMNGPVAGASRQ K F K R R F 1 2 0 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 9 2 1198.5731 E9PL71;E9PN91;E9PKK3;E9PNW6;E9PJD0;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 16 24 EEF1D Elongation factor 1-delta no no 3 0.00039153 84.213 By matching By matching By matching By MS/MS 1 1 1 1 1.4421 1.5991 14.886 4 Median 1.3972 1.4644 NaN 1 0 Median 1.4884 1.7462 NaN 1 0 Median 1.5359 1.8037 NaN 1 0 Median 1.2868 1.3163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16113000 6825200 9287500 917160 328820 588340 367690 157870 209830 2287000 893010 1394000 12541000 5445500 7095400 0 0 0 0 0 0 9252 985;2174;957 9618 45906;45907;45908;45909 45803 45803 1 FLAAGTHLGGTNLDFQMEQYIYK GALDVLQMKEEDVLKFLAAGTHLGGTNLDF GGTNLDFQMEQYIYKRKSDGIYIINLKRTW K F L Y K R 2 0 1 1 0 2 1 3 1 1 3 1 1 2 0 0 2 0 2 0 0 0 23 0 2616.2683 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 18 40 RPSA 40S ribosomal protein SA yes no 3 5.5241E-35 128.41 By MS/MS By MS/MS By matching By matching 2 5 1 1 1.177 1.0134 34.239 9 Median 0.9689 0.91222 14.871 2 0 Median 1.1958 1.0134 43.791 5 2 Median 1.2813 1.2252 NaN 1 0 Median 1.1752 0.99395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48209000 21715000 26494000 22094000 10551000 11543000 21027000 8827700 12199000 2665100 1221600 1443500 2423400 1114200 1309200 0 0 0 0 0 0 9253 232 9619;9620 45910;45911;45912;45913;45914;45915;45916;45917;45918 45804;45805;45806;45807;45808;45809 45808 95 6 FLADQQSEIDGLK ELNKLPKSVQNKLEKFLADQQSEIDGLKGR EKFLADQQSEIDGLKGRHEKFKVESEQQYF K F L L K G 1 0 0 2 0 2 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1462.7304 P12270;Q5SWX9 P12270 28 40 TPR Nucleoprotein TPR yes no 2 1.5449E-10 179.1 By MS/MS By MS/MS By MS/MS 2 2 2 1.0819 1.0492 13.852 6 Median NaN NaN NaN 0 0 Median 1.2211 1.0836 15.182 2 0 Median 0.91059 0.98588 11.626 2 0 Median 1.2511 1.1654 17.67 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97382000 45916000 51466000 0 0 0 21204000 9787500 11416000 69254000 33387000 35866000 6925000 2741000 4184000 0 0 0 0 0 0 9254 1978 9621 45919;45920;45921;45922;45923;45924 45810;45811;45812;45813;45814;45815;45816;45817;45818;45819 45811 10 FLADQQSEIDGLKGR ELNKLPKSVQNKLEKFLADQQSEIDGLKGR FLADQQSEIDGLKGRHEKFKVESEQQYFEI K F L G R H 1 1 0 2 0 2 1 2 0 1 2 1 0 1 0 1 0 0 0 0 0 0 15 1 1675.8529 P12270;Q5SWX9 P12270 28 42 TPR Nucleoprotein TPR yes no 3 8.1063E-10 101.32 By matching By MS/MS By matching 1 3 1 1.0302 1.1101 19.106 5 Median 1.0302 1.0383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9267 1.1101 25.81 3 0 Median NaN NaN NaN 0 0 Median 1.0714 1.2161 NaN 1 0 Median NaN NaN NaN 0 0 Median 60931000 30121000 30811000 6559500 3040000 3519500 0 0 0 52117000 26079000 26038000 0 0 0 2254600 1001400 1253300 0 0 0 9255 1978 9622 45925;45926;45927;45928;45929 45820;45821;45822;45823 45821 4 FLAEEGFYK VIHEFDPYFNYRTTRFLAEEGFYKFHNWFD NYRTTRFLAEEGFYKFHNWFDDRAWYPLGR R F L Y K F 1 0 0 0 0 0 2 1 0 0 1 1 0 2 0 0 0 0 1 0 0 0 9 0 1102.5335 P46977;A0A0C4DH80;E9PN73;E9PI32 P46977 59 67 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 2 0.00081745 96.253 By MS/MS By MS/MS 3 3 1.0178 1.0011 75.094 6 Median 0.98422 0.98873 15.051 3 1 Median 1.2436 1.1116 111.78 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143680000 69038000 74645000 87653000 43446000 44206000 56030000 25591000 30439000 0 0 0 0 0 0 0 0 0 0 0 0 9256 2352 9623 45930;45931;45932;45933;45934;45935 45824;45825;45826;45827;45828;45829;45830 45825 7 FLAENSASVYIK FLEMSAEFFQMESQKFLAENSASVYIKKVE SQKFLAENSASVYIKKVEARINEEIERVMH K F L I K K 2 0 1 0 0 0 1 0 0 1 1 1 0 1 0 2 0 0 1 1 0 0 12 0 1340.6976 Q13618 Q13618 224 235 CUL3 Cullin-3 yes yes 2 0.0036159 68.847 By MS/MS 1 1.1725 1.0865 NaN 1 Median 1.1725 1.0865 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6380300 2580700 3799600 6380300 2580700 3799600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9257 2831 9624 45936 45831 45831 1 FLAGSWGR F L G R 1 1 0 0 0 0 0 2 0 0 1 0 0 1 0 1 0 1 0 0 0 0 8 0 892.45554 REV__A8MQ27 yes yes 2 0.030021 39.218 By MS/MS 1 1.4977 1.4534 NaN 1 Median 1.4977 1.4534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6876700 2026500 4850200 6876700 2026500 4850200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 9258 4515 9625 45937 45832 45832 1 FLALEGNPLR DISSLPYSLGNLHLKFLALEGNPLRTIRRE NLHLKFLALEGNPLRTIRREIISKGTQEVL K F L L R T 1 1 1 0 0 0 1 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 10 0 1128.6291 Q9H9A6 Q9H9A6 338 347 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 2 0.0019589 61.962 By MS/MS By matching By matching By matching 1 1 1 1 0.90413 0.83461 15.341 4 Median 0.83667 0.81995 NaN 1 0 Median 1.0947 0.948 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97702 0.84953 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75267 0.65758 NaN 1 0 Median 5729600 3294500 2435100 4124300 2450100 1674200 1071300 559800 511510 0 0 0 146070 75186 70882 0 0 0 387920 209470 178450 9259 3996 9626 45938;45939;45940;45941 45833 45833 1 FLANVNDR PRVIYAMAEDGLLFKFLANVNDRTKTPIIA EDGLLFKFLANVNDRTKTPIIATLASGAVA K F L D R T 1 1 2 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 947.48248 P30825 P30825 374 381 SLC7A1 High affinity cationic amino acid transporter 1 yes yes 2 8.9252E-05 111.01 By MS/MS 2 1.2595 1.0133 NaN 1 Median NaN NaN NaN 0 0 Median 1.2595 1.0133 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14159000 6565300 7594000 0 0 0 14159000 6565300 7594000 0 0 0 0 0 0 0 0 0 0 0 0 9260 2198 9627 45942;45943 45834;45835 45834 2 FLANVSTVLTSK LPSDFTPAVHASLDKFLANVSTVLTSKYR_ LDKFLANVSTVLTSKYR_____________ K F L S K Y 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 2 2 0 0 2 0 0 12 0 1278.7184 CON__P01966 CON__P01966 129 140 yes yes 2 0.0010784 85.958 By MS/MS By MS/MS 1 1 0.02984 0.027214 NaN 1 Median 0.02984 0.027214 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12875000 12647000 228170 7953300 7725100 228170 0 0 0 4921500 4921500 0 0 0 0 0 0 0 0 0 0 + 9261 738 9628 45944;45945 45836;45837 45836 2 FLAPYTTFSR KSIHISCPKENASSKFLAPYTTFSRIHTKS NASSKFLAPYTTFSRIHTKSITCLDISSRG K F L S R I 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 1 2 0 1 0 0 0 10 0 1201.6132 Q9BRP4;F5H103;F5H3I1;F5H0C4;F5H5D4 Q9BRP4 80 89 PAAF1 Proteasomal ATPase-associated factor 1 yes no 2 0.0013144 66.621 By MS/MS By matching 1 1 0.88568 0.8305 11.09 2 Median 0.90308 0.89824 NaN 1 0 Median 0.86862 0.76786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9413700 4895100 4518600 8865400 4539800 4325500 548350 355250 193100 0 0 0 0 0 0 0 0 0 0 0 0 9262 3798 9629 45946;45947 45838;45839 45838 2 FLAQILTAFPALR KKMCSLAVVNLGTHKFLAQILTAFPALRFV HKFLAQILTAFPALRFVEEQGPNSSATFMV K F L L R F 3 1 0 0 0 1 0 0 0 1 3 0 0 2 1 0 1 0 0 0 0 0 13 0 1459.8551 I3L2C7;P57678 I3L2C7 566 578 GEMIN4 Gem-associated protein 4 yes no 2 0.0097997 36.334 By MS/MS By matching By matching 1 2 1 0.9414 0.93239 19.676 4 Median 1.0587 1.0696 NaN 1 0 Median 0.93545 0.83014 26.831 2 0 Median 0.8371 0.86625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1221100 616920 604140 686800 324330 362470 253180 131650 121530 281080 160940 120140 0 0 0 0 0 0 0 0 0 9263 1282 9630 45948;45949;45950;45951 45840;45841 45841 2 FLASVLHNGLGR ______________________________ PSRFLASVLHNGLGRYVQQLQRLSFSVSRD R F L G R Y 1 1 1 0 0 0 0 2 1 0 3 0 0 1 0 1 0 0 0 1 0 0 12 0 1282.7146 H0Y6Y8;B1AL05;Q8N983;M0R051 H0Y6Y8 7 18 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2;3 9.639E-05 155.07 By MS/MS By MS/MS By MS/MS 2 2 1 1.105 1.0801 7.3797 5 Median 1.0582 1.0285 6.9135 2 0 Median 1.3117 1.0898 10.883 2 0 Median 1.0966 1.1103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28834000 13315000 15519000 22550000 10581000 11969000 3142100 1351100 1791000 3141700 1382700 1759000 0 0 0 0 0 0 0 0 0 9264 570 9631 45952;45953;45954;45955;45956 45842;45843;45844;45845;45846;45847;45848;45849 45845 8 FLATGATDGR HKGPIHSLTFSPNGRFLATGATDGRVLLWD SPNGRFLATGATDGRVLLWDIGHGLMVGEL R F L G R V 2 1 0 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 0 0 0 10 0 1007.5036 Q15542 Q15542 683 692 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 2 0.022064 36.557 By MS/MS By matching 1 1 0.53435 0.50989 115.41 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0752 1.1532 NaN 1 0 Median 0.26556 0.22545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1966200 1145900 820230 0 0 0 0 0 0 1525600 886810 638830 440540 259140 181400 0 0 0 0 0 0 9265 2957 9632 45957;45958 45850 45850 1 FLAVGLVDNTVR CMSLANVPPGEQRSRFLAVGLVDNTVRIIS RSRFLAVGLVDNTVRIISLDPSDCLQPLSM R F L V R I 1 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 3 0 0 12 0 1302.7296 Q15393 Q15393 604 615 SF3B3 Splicing factor 3B subunit 3 yes yes 2 3.3934E-06 127.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 2 1.1056 1.05 8.9161 15 Median 0.98475 0.94353 12.98 2 0 Median 1.1145 0.91925 5.3027 2 0 Median 1.0473 1.0825 5.226 3 0 Median 1.2054 1.05 6.8031 3 0 Median 1.0465 1.0624 5.8975 3 0 Median 1.1794 1.0104 7.9151 2 0 Median 262060000 126340000 135720000 27143000 13258000 13885000 24619000 11475000 13143000 179220000 86857000 92368000 7750500 3566800 4183600 22364000 10726000 11637000 962190 461020 501170 9266 2946 9633 45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970;45971;45972;45973 45851;45852;45853;45854;45855;45856;45857;45858;45859;45860;45861;45862;45863;45864;45865;45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876;45877 45852 27 FLCADYAEQDELDYHR RTALHGVKWPQSNPKFLCADYAEQDELDYH LCADYAEQDELDYHRGLLVDRPSETKTEEQ K F L H R G 2 1 0 3 1 1 2 0 1 0 2 0 0 1 0 0 0 0 2 0 0 0 16 0 2043.8633 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 1023 1038 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 2.8224E-05 70.529 By MS/MS 2 1.1654 1.1995 18.242 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1654 1.1995 18.242 2 0 Median NaN NaN NaN 0 0 Median 5395600 2605600 2790000 0 0 0 0 0 0 0 0 0 0 0 0 5395600 2605600 2790000 0 0 0 9267 4560 9634 45974;45975 45878;45879 45878 2 FLDAYAEHK PGDIYHQTWARYFVKFLDAYAEHKLQFWAV ARYFVKFLDAYAEHKLQFWAVTAENEPSAG K F L H K L 2 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1092.524 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 168 176 GBA Glucosylceramidase yes no 2 0.0027536 69.825 By MS/MS 1 1.1178 0.95118 NaN 1 Median NaN NaN NaN 0 0 Median 1.1178 0.95118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4556100 2482300 2073800 0 0 0 4556100 2482300 2073800 0 0 0 0 0 0 0 0 0 0 0 0 9268 281 9635 45976 45880 45880 1 FLDDLGNAK SLKHATRIIDEVVNKFLDDLGNAKSHLMSL DEVVNKFLDDLGNAKSHLMSLYSACSSEVP K F L A K S 1 0 1 2 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 991.49746 O95816 O95816 124 132 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.00059728 110.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.2682 1.1158 22.707 6 Median 1.3741 1.2827 NaN 1 0 Median 0.94266 0.79603 NaN 1 0 Median 1.3934 1.3059 NaN 1 0 Median 1.6443 1.3631 NaN 1 0 Median 0.88217 0.89934 NaN 1 0 Median 1.1704 0.97066 NaN 1 0 Median 50920000 22999000 27920000 13003000 5715300 7287300 3020400 1457100 1563300 12202000 5722300 6480200 5645300 2062100 3583200 13330000 6463600 6866900 3718400 1578900 2139400 9269 1795 9636 45977;45978;45979;45980;45981;45982 45881;45882;45883;45884;45885;45886;45887;45888;45889 45882 9 FLDELEDEAK LAIYGYTFYSISQERFLDELEDEAKAARAR ISQERFLDELEDEAKAARARALARASGS__ R F L A K A 1 0 0 2 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1207.5608 Q9Y2R0 Q9Y2R0 84 93 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes yes 2 0.0015751 64.297 By matching By MS/MS By matching 1 1 1 1.5165 1.31 8.9346 3 Plateau 1.4042 1.31 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5165 1.4533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4851 1.2165 NaN 1 0 Median 13693000 4813700 8879500 1581700 660560 921190 0 0 0 10026000 3461000 6564800 0 0 0 0 0 0 2085800 692220 1393600 9270 4388 9637 45983;45984;45985 45890;45891 45890 2 FLDFFSK VTKGCCSQTDGLNSKFLDFFSKAIQCARQE QTDGLNSKFLDFFSKAIQCARQEKSSSGLN K F L S K A 0 0 0 1 0 0 0 0 0 0 1 1 0 3 0 1 0 0 0 0 0 0 7 0 902.4538 Q13315;E9PIN0 Q13315 209 215 ATM Serine-protein kinase ATM yes no 2 0.053242 38.792 By MS/MS 2 0.78163 0.85734 7.9361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78163 0.85734 7.9361 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1492700 859310 633410 0 0 0 0 0 0 1492700 859310 633410 0 0 0 0 0 0 0 0 0 9271 2805 9638 45986;45987 45892 45892 1 FLDGIYVSEK LIQQATTVKNKDIRKFLDGIYVSEKGT___ KDIRKFLDGIYVSEKGT_____________ K F L E K G 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1169.5968 D6RAN4;P32969;A0A2R8Y5Y7;H0Y9R4;H0Y9V9 D6RAN4 170 179 RPL9 60S ribosomal protein L9 yes no 2 0.00070717 97.431 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 3 2 1.1703 1.112 10.703 13 Median 1.109 1.028 8.0645 3 0 Median 1.1695 0.9821 1.7122 2 0 Median 1.2031 1.1294 NaN 1 0 Median 1.2121 1.0193 17.073 2 0 Median 1.1333 1.1538 11.45 3 0 Median 1.3278 1.1006 5.9576 2 0 Median 602260000 272920000 329330000 360400000 164830000 195570000 41654000 18593000 23061000 126970000 56019000 70947000 11642000 4633800 7007800 52144000 24671000 27473000 9453900 4178100 5275800 9272 812 9639 45988;45989;45990;45991;45992;45993;45994;45995;45996;45997;45998;45999;46000 45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904 45897 12 FLDLVPSLQLDPAQIYR KNLLCGFYGRHAELRFLDLVPSLQLDPAQI DLVPSLQLDPAQIYRVTWFISWSPCFSWGC R F L Y R V 1 1 0 2 0 2 0 0 0 1 4 0 0 1 2 1 0 0 1 1 0 0 17 0 1987.0779 B0QYD3;Q9UH17;P31941 B0QYD3 258 274 APOBEC3B;APOBEC3A DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3A yes no 2 0.0034952 33.409 By matching By MS/MS 1 2 0.90514 0.93221 4.2121 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90514 0.89015 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91996 0.95006 2.6824 2 0 Median NaN NaN NaN 0 0 Median 1724000 891530 832450 0 0 0 0 0 0 225520 100000 125520 0 0 0 1498500 791530 706930 0 0 0 9273 555 9640 46001;46002;46003 45905;45906 45906 2 FLDLWNK MAIAYWNLVLNGRFKFLDLWNKFLLEHHKR LVLNGRFKFLDLWNKFLLEHHKRSIPKDTW K F L N K F 0 0 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 0 7 0 934.49125 Q96GG9;C9JVE2 Q96GG9 192 198 DCUN1D1 DCN1-like protein 1;DCN1-like protein yes no 2 0.053104 38.818 By matching By matching By MS/MS By matching 1 1 1 1 1.0198 0.95388 2.2562 4 Median 1.0215 0.95012 NaN 1 0 Median 1.165 0.99621 NaN 1 0 Median 1.0181 0.95651 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91588 0.95125 NaN 1 0 Median NaN NaN NaN 0 0 Median 15733000 7368200 8365100 6632800 3037400 3595400 581790 302000 279800 8074700 3851700 4223000 0 0 0 444120 177180 266930 0 0 0 9274 3657 9641 46004;46005;46006;46007 45907;45908 45907 2 FLDNFSSGR TSGGTKVPLEARPVRFLDNFSSGRRGATSA EARPVRFLDNFSSGRRGATSAEAFLAAGYG R F L G R R 0 1 1 1 0 0 0 1 0 0 1 0 0 2 0 2 0 0 0 0 0 0 9 0 1041.488 Q9HAB8;Q5VVM3 Q9HAB8 56 64 PPCS Phosphopantothenate--cysteine ligase yes no 2 0.00073393 101.43 By MS/MS By MS/MS 1 1 1.1439 1.0104 2.4226 2 Median 1.0982 1.0278 NaN 1 0 Median 1.1915 0.99322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22959000 10703000 12256000 17959000 8600000 9358900 4999800 2103000 2896800 0 0 0 0 0 0 0 0 0 0 0 0 9275 4007 9642 46008;46009 45909;45910 45909 2 FLDPNTLER WHKLSELEPGTGDLRFLDPNTLERLTYHQL GTGDLRFLDPNTLERLTYHQLLERCVRAPG R F L E R L 0 1 1 1 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 9 0 1103.5611 P58107;A0A075B730 P58107 200 208 EPPK1 Epiplakin yes no 2 0.00043177 128.69 By MS/MS By MS/MS By matching 2 1 1 1.1495 1.073 5.1149 3 Median 1.1567 1.1078 6.7488 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1495 1.073 NaN 1 0 Median 32386000 15074000 17312000 32112000 14947000 17165000 0 0 0 0 0 0 0 0 0 0 0 0 273550 126650 146900 9276 2520 9643 46010;46011;46012;46013 45911;45912;45913;45914 45912 4 FLDQNLQK RLARDANSENCNKNKFLDQNLQKYQAECSQ ENCNKNKFLDQNLQKYQAECSQFKAKLASL K F L Q K Y 0 0 1 1 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5291 P15924 P15924 1057 1064 DSP Desmoplakin yes yes 2 0.0023729 116.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 0.88779 0.85438 28.024 6 Median 0.60472 0.60025 NaN 1 0 Median 0.91425 0.80885 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.62669 0.60457 NaN 1 0 Median 0.86209 0.90247 NaN 1 1 Median 1.3284 1.1163 6.2656 2 1 Median 52761000 25312000 27448000 3248100 1932400 1315800 11107000 5047800 6059200 0 0 0 2388200 1461600 926610 11344000 5641800 5702600 24673000 11229000 13444000 9277 2021 9644 46014;46015;46016;46017;46018;46019;46020 45915;45916;45917;45918;45919;45920;45921;45922;45923;45924 45917 10 FLDQSLGEQVVK MKSISLASCHQLHSKFLDQSLGEQVVKNLL HSKFLDQSLGEQVVKNLLFAAKVLYLLELY K F L V K N 0 0 0 1 0 2 1 1 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1361.7191 O75691 O75691 2544 2555 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00060797 69.276 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2341 1.1069 16.277 5 Median NaN NaN NaN 0 0 Median 1.2341 1.0757 NaN 1 0 Median 0.9452 1.0446 NaN 1 0 Median 1.4998 1.3835 16.785 2 0 Median 1.0519 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median 18390000 8588100 9801600 0 0 0 3648100 1552300 2095800 9977300 4930100 5047200 1396900 601990 794880 3367500 1503800 1863700 0 0 0 9278 1691 9645 46021;46022;46023;46024;46025 45925;45926;45927;45928 45925 4 FLDSTGSR QGLNEAGDDLEAVAKFLDSTGSRLDYRRYA DLEAVAKFLDSTGSRLDYRRYADTLFDILV K F L S R L 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 2 1 0 0 0 0 0 8 0 881.4243 E7ETZ4;Q9Y6E2;Q75MG1;E7EMS9;E9PFE3;C9JF98;F8WDX8 E7ETZ4 51 58 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.031031 38.792 By MS/MS 1 1.2507 1.0738 NaN 1 Median NaN NaN NaN 0 0 Median 1.2507 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1155400 519590 635820 0 0 0 1155400 519590 635820 0 0 0 0 0 0 0 0 0 0 0 0 9279 892 9646 46026 45929 45929 1 FLDTSHYSTAGSSSVR SVPLIDVTNLPTPRKFLDTSHYSTAGSSSV LDTSHYSTAGSSSVREINLQDIKEDLELDP K F L V R E 1 1 0 1 0 0 0 1 1 0 1 0 0 1 0 5 2 0 1 1 0 0 16 0 1713.7958 Q96A65 Q96A65 241 256 EXOC4 Exocyst complex component 4 yes yes 3 0.0023214 28.627 By matching By MS/MS By MS/MS 1 1 1 1.2614 1.0725 21.488 3 Median NaN NaN NaN 0 0 Median 1.5246 1.3018 NaN 1 0 Median 0.7914 0.8476 NaN 1 0 Median 1.2614 1.0725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10470000 4778700 5691100 0 0 0 3086700 1153600 1933100 3954000 2128900 1825100 3429100 1496200 1932900 0 0 0 0 0 0 9280 3595 9647 46027;46028;46029 45930;45931;45932 45932 3 FLDVENELSR IGDNVAKVNDSWKERFLDVENELSRIRSEK SWKERFLDVENELSRIRSEKASIEHEALYL R F L S R I 0 1 1 1 0 0 2 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1220.6037 P49454 P49454 1897 1906 CENPF Centromere protein F yes yes 2 1.2123E-05 151.44 By matching By matching By MS/MS By matching By matching 1 2 1 1 1 0.69529 0.7305 73.496 6 Median 0.2562 0.25629 NaN 1 0 Median 1.3268 1.1276 17.619 2 0 Median 0.88078 0.92643 NaN 1 0 Median 0.21529 0.22466 NaN 1 0 Median 0.54886 0.57601 NaN 1 0 Median NaN NaN NaN 0 0 Median 32206000 17569000 14637000 5369900 4185400 1184400 6105600 2512600 3593000 16542000 8185900 8356000 195620 158400 37217 3993100 2527000 1466100 0 0 0 9281 2383 9648 46030;46031;46032;46033;46034;46035 45933;45934 45933 2 FLDVLELAEK FWEDIKARAEEREIKFLDVLELAEKFWYDM EREIKFLDVLELAEKFWYDMAALLTTIKDT K F L E K F 1 0 0 1 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 10 0 1175.6438 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6100 6109 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.012784 40.882 By MS/MS By matching 1 2 1.166 1.0243 18.501 3 Median 0.90204 0.89538 NaN 1 0 Median 1.3143 1.1499 16.353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4935400 2453300 2482100 3259400 1724900 1534500 1676000 728350 947610 0 0 0 0 0 0 0 0 0 0 0 0 9282 1220 9649 46036;46037;46038 45935;45936 45936 2 FLEAPVSGNQQLSNDGMLVILAAGDR TVTELAQVIVSRGGRFLEAPVSGNQQLSND LSNDGMLVILAAGDRGLYEDCSSCFQAMGK R F L D R G 3 1 2 2 0 2 1 3 0 1 4 0 1 1 1 2 0 0 0 2 0 0 26 0 2714.3698 Q49A26;K7EMM8 Q49A26 382 407 GLYR1 Putative oxidoreductase GLYR1 yes no 3 0.065594 6.0301 By MS/MS 1 0.74168 0.78238 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74168 0.78238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1480300 820610 659670 0 0 0 0 0 0 1480300 820610 659670 0 0 0 0 0 0 0 0 0 9283 3018 9650 46039 45937;45938 45937 2 FLEEFITPIVK INFIHHNWPSLLRHRFLEEFITPIVKVSKN LRHRFLEEFITPIVKVSKNKQEMAFYSLPE R F L V K V 0 0 0 0 0 0 2 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1334.7486 P11388 P11388 569 579 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00013635 90.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 3 4 1.0743 1.0246 48.754 18 Median 0.3745 0.36828 120.37 2 1 Median 1.2484 1.0971 7.7241 2 0 Median 0.87824 0.93964 22.61 4 0 Median 1.6615 1.4526 9.172 3 0 Median 1.025 1.0746 7.5624 3 0 Plateau 1.2136 1.0111 3.9848 4 0 Median 111490000 54496000 56991000 1860000 1325100 534840 9267500 4302300 4965200 38782000 19974000 18808000 3082100 1237100 1845100 51270000 24537000 26733000 7225800 3120000 4105800 9284 1963 9651 46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057 45939;45940;45941;45942;45943;45944;45945;45946;45947;45948;45949;45950;45951;45952;45953;45954 45950 16 FLEEGNLEEAEIQK SLLPPTDTRFRPDQRFLEEGNLEEAEIQKQ RFLEEGNLEEAEIQKQRIEQLQRERRRVLE R F L Q K Q 1 0 1 0 0 1 5 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 14 0 1647.7992 Q9H4L5 Q9H4L5 816 829 OSBPL3 Oxysterol-binding protein-related protein 3 yes yes 2 0.00078971 60.434 By MS/MS 1 1.048 1.0272 NaN 1 Median 1.048 1.0272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4251400 1758500 2492800 4251400 1758500 2492800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9285 3967 9652 46058 45955;45956 45955 2 FLEEHPGGEEVLR STWLILHHKVYDLTKFLEEHPGGEEVLREQ TKFLEEHPGGEEVLREQAGGDATENFEDVG K F L L R E 0 1 0 0 0 0 4 2 1 0 2 0 0 1 1 0 0 0 0 1 0 0 13 0 1510.7416 P00167 P00167 40 52 CYB5A Cytochrome b5 yes yes 2;3 0.00013515 96.015 By MS/MS By MS/MS By MS/MS 2 1 1 1.9983 1.7801 187.48 4 Median 1.4291 1.3648 14.927 2 2 Median 2.5203 2.0891 NaN 1 1 Median 64.766 65.162 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246540000 25560000 220980000 60525000 20606000 39918000 10364000 2414800 7949400 175650000 2538500 173110000 0 0 0 0 0 0 0 0 0 9286 1812 9653 46059;46060;46061;46062 45957;45958;45959;45960 45958 4 FLEESVSMSPEER NKDKMHFESGSTLKKFLEESVSMSPEERAR KKFLEESVSMSPEERARYLENYDAIRVTHE K F L E R A 0 1 0 0 0 0 4 0 0 0 1 0 1 1 1 3 0 0 0 1 0 0 13 0 1538.6923 P15374;A0A087WTB8;Q5TBK7 P15374 122 134 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 2 1.3378E-05 105.86 By MS/MS 1 0.36349 0.30745 NaN 1 Median NaN NaN NaN 0 0 Median 0.36349 0.30745 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12592000 8609100 3983200 0 0 0 12592000 8609100 3983200 0 0 0 0 0 0 0 0 0 0 0 0 9287 2017 9654 46063 45961 45961 1 FLEETNR MLSDLQIYQDSFEQRFLEETNRLYAAEGQK YQDSFEQRFLEETNRLYAAEGQKLMQEREV R F L N R L 0 1 1 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 907.43995 Q13620;K4DI93;A6NE76 Q13620 389 395 CUL4B Cullin-4B yes no 2 0.012003 79.116 By MS/MS By MS/MS 1 1 1.3668 1.1499 16.183 2 Median NaN NaN NaN 0 0 Median 1.489 1.2893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2547 1.0255 NaN 1 0 Median 5601000 2219300 3381600 0 0 0 4751700 1835600 2916100 0 0 0 0 0 0 0 0 0 849230 383720 465510 9288 1358 9655 46064;46065 45962;45963;45964 45963 3 FLEEYLSSTPQR ______________________________ ISRFLEEYLSSTPQRLKLLDAYLLYILLTG R F L Q R L 0 1 0 0 0 1 2 0 0 0 2 0 0 1 1 2 1 0 1 0 0 0 12 0 1468.7198 F5GXX5;P61803;F5H895;A0A0B4J239 F5GXX5 12 23 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes no 2;3 6.3747E-79 223.08 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 3 0.89753 0.83454 100.22 15 Median 0.86968 0.83454 48.181 5 3 Median 0.92875 0.75456 62.048 4 1 Median 7.955 7.9918 144.58 3 2 Plateau 7.5288 5.7538 157.88 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 470480000 141670000 328810000 208240000 96435000 111810000 73518000 25235000 48283000 178260000 18485000 159770000 10463000 1512200 8950800 0 0 0 0 0 0 9289 1010 9656 46066;46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080 45965;45966;45967;45968;45969;45970;45971;45972;45973;45974;45975;45976 45971 12 FLEFQYLTGGLVDPEVHGR EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE QYLTGGLVDPEVHGRISTEEAIRKGFIDGR R F L G R I 0 1 0 1 0 1 2 3 1 0 3 0 0 2 1 0 1 0 1 2 0 0 19 0 2176.0953 P15924 P15924 2726 2744 DSP Desmoplakin yes yes 3 0.00053968 31.801 By MS/MS By MS/MS By matching 1 3 1 0.85574 0.87666 10.58 5 Median 1.0057 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82218 0.8472 5.2516 3 0 Median 1.1396 0.99303 NaN 1 0 Median 5685000 2850500 2834600 1584000 761650 822370 0 0 0 0 0 0 0 0 0 3517500 1794200 1723300 583530 294640 288900 9290 2021 9657 46081;46082;46083;46084;46085 45977;45978;45979 45977 3 FLEGNSMGMTNLER GDGFSRATKDSMIRKFLEGNSMGMTNLERD KFLEGNSMGMTNLERDQCHLGQEEDVYHTV K F L E R D 0 1 2 0 0 0 2 2 0 0 2 0 2 1 0 1 1 0 0 0 0 0 14 0 1597.7229 Q6ZUJ8 Q6ZUJ8 488 501 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 yes yes 2 0.024414 43.308 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3721100 0 3721100 0 0 0 0 0 0 0 0 0 3721100 0 3721100 0 0 0 0 0 0 9291 3201 9658 46086 45980 45980 1 FLEHLSGAGK MDADDSRAPKGSLRKFLEHLSGAGKAIGVL GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN K F L G K A 1 0 0 0 0 0 1 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1057.5556 Q01813 Q01813 16 25 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.00033827 85.676 By MS/MS By MS/MS 1 1 1.2002 1.1015 5.2996 2 Median 1.1859 1.1436 NaN 1 0 Median 1.2147 1.061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10203000 4600300 5602800 3357400 1413600 1943800 6845700 3186700 3659000 0 0 0 0 0 0 0 0 0 0 0 0 9292 2692 9659 46087;46088 45981;45982;45983 45983 3 FLELLPVSK VCLRFLPVFDIVIHRFLELLPVSKSLETLL DIVIHRFLELLPVSKSLETLLDHLGGLYKF R F L S K S 0 0 0 0 0 0 1 0 0 0 3 1 0 1 1 1 0 0 0 1 0 0 9 0 1044.6219 Q5JWT2;Q9ULK4 Q5JWT2 980 988 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 2 0.017009 42.109 By MS/MS By matching 1 1 0.92255 0.8844 11.615 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88693 0.96011 NaN 1 0 Median 0.95961 0.81467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3458500 1954900 1503600 0 0 0 0 0 0 3001600 1732700 1268900 456900 222190 234700 0 0 0 0 0 0 9293 3059 9660 46089;46090 45984;45985 45985 2 FLEMCNDLLAR FMNDVDVSGTMNRGKFLEMCNDLLARVEPP NRGKFLEMCNDLLARVEPPLRSVLEQTKLK K F L A R V 1 1 1 1 1 0 1 0 0 0 3 0 1 1 0 0 0 0 0 0 0 0 11 0 1380.653 P34932;A0A087WYC1;A0A087WTS8 P34932 306 316 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.0039952 49.813 By MS/MS 2 1.1553 1.0094 8.7668 2 Median NaN NaN NaN 0 0 Median 1.1553 1.0094 8.7668 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6150100 2917100 3233000 0 0 0 6150100 2917100 3233000 0 0 0 0 0 0 0 0 0 0 0 0 9294 2230 9661 46091;46092 45986;45987 45986 2 FLEMHQL VTIEDVQKLAAFMKKFLEMHQL________ KLAAFMKKFLEMHQL_______________ K F L Q L - 0 0 0 0 0 1 1 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 7 0 916.44767 Q9Y617 Q9Y617 364 370 PSAT1 Phosphoserine aminotransferase yes yes 2 0.011546 89.903 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10161000 0 0 10161000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9295 4476 9662 46093 45988 45988 1 FLENALAVSTK GLVLHGVMEYDLSLRFLENALAVSTKYHGP LSLRFLENALAVSTKYHGPKALKVALSHHL R F L T K Y 2 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 11 0 1191.6499 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 1126 1136 CLUH Clustered mitochondria protein homolog yes no 2 0.008052 59.426 By MS/MS 1 1.5304 1.4793 NaN 1 Median 1.5304 1.4793 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8381500 3076400 5305000 8381500 3076400 5305000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9296 1651 9663 46094 45989 45989 1 FLEPTLR EIQTVNKQFPCEPFKFLEPTLRLEYCEALA QFPCEPFKFLEPTLRLEYCEALAMLREAGV K F L L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 7 0 874.49125 P14868;H7BZ35 P14868 339 345 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0022322 114.59 By MS/MS By MS/MS By MS/MS 3 2 1 1.0288 0.93729 5.7372 6 Median 0.99986 0.97274 5.8715 3 0 Median 1.0955 0.92318 2.9581 2 0 Median 0.86599 0.89415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48162000 23506000 24656000 17463000 9080200 8383200 25945000 11852000 14092000 4754100 2573900 2180200 0 0 0 0 0 0 0 0 0 9297 2012 9664 46095;46096;46097;46098;46099;46100 45990;45991;45992;45993;45994;45995 45992 6 FLEQQNK KTLNNKFASFIDKVRFLEQQNKMLETKWSL ASFIDKVRFLEQQNKMLETKWSLLQQQKTA R F L N K M 0 0 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 905.46068 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;CON__Q9NSB2;CON__Q6ISB0;Q8IWY7;Q9NSB2;U3KPR1;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__Q5XKE5;Q5XKE5;CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4;P08670;B0YJC4;A0A1B0GTT5 P05787 111 117 KRT8;KRT7;KRT84;KRT86;KRT6A;KRT5;KRT6C;KRT79;KRT78;VIM Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 79;Keratin, type II cytoskeletal 78;Vimentin no no 2 0.0031639 121.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 6 6 3.7456 3.5062 71.887 25 Linear 1.0122 0.93449 78.278 3 0 Median 1.3306 1.123 115.18 3 0 Median 1.0366 0.98203 18.778 4 0 Median 0.94899 0.81432 104.98 3 0 Plateau 0.82417 0.83726 67.744 6 0 Median 1.0009 0.81868 73.373 6 1 Median 231250000 106630000 124620000 22685000 11127000 11559000 65118000 26699000 38419000 34729000 15818000 18911000 4523800 2305400 2218400 77436000 37184000 40252000 26754000 13498000 13256000 + 9298 750;1907;757;741;748;766;786;788 9665 46101;46102;46103;46104;46105;46106;46107;46108;46109;46110;46111;46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124;46125 45996;45997;45998;45999;46000;46001;46002;46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017;46018;46019;46020;46021;46022;46023 46018 28 FLEQQNQVLETK KALNNKFASFIDKVRFLEQQNQVLETKWNL KVRFLEQQNQVLETKWNLLQQLDLNNCRKN R F L T K W 0 0 1 0 0 3 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1475.762 CON__Q14CN4-1;CON__Q6IME9;Q14CN4;H0YIG3 CON__Q14CN4-1 145 156 KRT72 Keratin, type II cytoskeletal 72 no no 2 3.7259E-30 175.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 13 4 3 0.062551 0.053609 119.97 25 Median 0.17243 0.17291 67.696 5 5 Median 0.028562 0.023531 181.77 4 4 Median 0.098907 0.09946 13.514 3 3 Median 0.04402 0.039309 77.242 7 7 Median 0.18388 0.1825 110.26 4 4 Median 0.044434 0.038077 48.381 2 2 Median 233630000 206110000 27519000 82253000 73830000 8422300 16461000 15215000 1245700 25708000 23989000 1719500 43620000 42674000 946090 39977000 25006000 14971000 25610000 25395000 215130 + 9299 771 9666 46126;46127;46128;46129;46130;46131;46132;46133;46134;46135;46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146;46147;46148;46149;46150;46151;46152;46153;46154;46155;46156;46157 46024;46025;46026;46027;46028;46029;46030;46031;46032;46033;46034;46035;46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057;46058 46025 35 FLEQQNQVLQTK KSLNNQFASFIDKVRFLEQQNQVLQTKWEL KVRFLEQQNQVLQTKWELLQQVDTSTRTHN R F L T K W 0 0 1 0 0 4 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1474.778 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908;CON__ENSEMBL:ENSBTAP00000038253;CON__Q7Z794;Q7Z794 P04264 200 211 KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 2;3 3.0843E-110 241.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 11 13 11 12 8 0.012898 0.011018 202.3 52 Median 0.011238 0.0097961 217.94 12 12 Median 0.0059392 0.0049807 145.1 9 9 Median 0.009352 0.0093847 169.08 12 12 Median 0.015864 0.013829 207.14 6 6 Median 0.071664 0.071466 240.91 10 8 Median 0.0094177 0.0076207 173.53 3 3 Median 16135000000 15999000000 136300000 3827700000 3795000000 32684000 2451400000 2438400000 13003000 2798100000 2762900000 35197000 2390200000 2377200000 12971000 2513500000 2474700000 38797000 2154400000 2150700000 3649800 + 9300 1848;764;765;735;789 9667 46158;46159;46160;46161;46162;46163;46164;46165;46166;46167;46168;46169;46170;46171;46172;46173;46174;46175;46176;46177;46178;46179;46180;46181;46182;46183;46184;46185;46186;46187;46188;46189;46190;46191;46192;46193;46194;46195;46196;46197;46198;46199;46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212;46213;46214;46215;46216;46217;46218;46219;46220;46221;46222;46223;46224;46225 46059;46060;46061;46062;46063;46064;46065;46066;46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083;46084;46085;46086;46087;46088;46089;46090;46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103;46104;46105;46106;46107;46108;46109;46110;46111;46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129;46130;46131;46132;46133;46134;46135;46136;46137;46138;46139;46140;46141;46142;46143;46144;46145;46146;46147;46148;46149;46150;46151;46152;46153;46154;46155;46156;46157;46158;46159;46160;46161;46162;46163;46164;46165;46166;46167;46168;46169;46170;46171;46172;46173;46174;46175;46176 46157 118 FLEQQNQVLQTKWELLQQVDTSTR KSLNNQFASFIDKVRFLEQQNQVLQTKWEL QTKWELLQQVDTSTRTHNLEPYFESFINNL R F L T R T 0 1 1 1 0 6 2 0 0 0 4 1 0 1 0 1 3 1 0 2 0 0 24 1 2931.509 P04264;CON__P04264 P04264 200 223 KRT1 Keratin, type II cytoskeletal 1 yes no 3 4.054E-09 67.614 By MS/MS By MS/MS By MS/MS 1 1 2 0.046733 0.05328 33.68 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.046733 0.05328 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.042504 0.047435 46.676 2 2 Median NaN NaN NaN 0 0 Median 24106000 23755000 351510 0 0 0 5483800 5483800 0 1842100 1742900 99107 0 0 0 16781000 16528000 252400 0 0 0 + 9301 1848 9668 46226;46227;46228;46229 46177;46178;46179;46180 46179 4 FLEQVHQLYDDSFPMEIR ______________________________ QVHQLYDDSFPMEIRQYLAQWLEKQDWEHA K F L I R Q 0 1 0 2 0 2 2 0 1 1 2 0 1 2 1 1 0 0 1 1 0 0 18 0 2266.0729 P42224;J3KPM9;E7EPD2;D2KFR9;E7ENM1;E9PH66 P42224 14 31 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 3 1.4595E-06 69.737 By MS/MS By MS/MS 1 1 1.0192 0.93943 13.94 2 Median 1.0559 1.0368 NaN 1 0 Median 0.98376 0.85125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7881400 3855300 4026100 2488900 1143000 1345900 5392600 2712300 2680300 0 0 0 0 0 0 0 0 0 0 0 0 9302 2308 9669 46230;46231 46181;46182;46183;46184 46184 4 FLESLPEEEQQR KCDQKKKDYEVELLRFLESLPEEEQQRVLG LLRFLESLPEEEQQRVLGEEKMLNINKKQA R F L Q R V 0 1 0 0 0 2 4 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1503.7205 P17480;E9PKP7 P17480 361 372 UBTF Nucleolar transcription factor 1 yes no 2;3 4.8065E-06 150.61 By MS/MS By MS/MS By MS/MS 1 4 1 0.86606 0.8997 5.5403 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84439 0.89059 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86606 0.87802 6.9075 4 1 Median 1.142 0.9188 NaN 1 0 Median 160470000 82556000 77916000 0 0 0 0 0 0 55499000 28178000 27321000 0 0 0 93152000 49169000 43984000 11821000 5209400 6611700 9303 2040 9670 46232;46233;46234;46235;46236;46237 46185;46186;46187;46188;46189;46190;46191;46192;46193 46186 8 FLESPDFQPNIAK AAWPHLQLVYEFFLRFLESPDFQPNIAKKY LRFLESPDFQPNIAKKYIDQKFVLALLDLF R F L A K K 1 0 1 1 0 1 1 0 0 1 1 1 0 2 2 1 0 0 0 0 0 0 13 0 1504.7562 E9PFR3;Q14738;H0Y8C4;H0YJ35;H0YJ75;Q13362;Q96B13 E9PFR3 212 224 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform no no 2 0.0015803 69.276 By MS/MS By matching By MS/MS By matching By matching 4 1 1 3 2 0.70349 0.63943 15.897 10 Median 0.47791 0.65385 14.197 3 1 Plateau 0.9049 0.78167 NaN 1 0 Median 0.81475 0.80393 NaN 1 0 Median 0.78249 0.69809 5.5176 3 0 Plateau NaN NaN NaN 0 0 Median 0.68217 0.57072 2.5689 2 0 Median 26888000 15563000 11325000 18765000 11238000 7526900 2045500 1041700 1003800 4569800 2389900 2180000 1020600 600250 420340 0 0 0 487400 293300 194100 9304 920;1185 9671 46238;46239;46240;46241;46242;46243;46244;46245;46246;46247;46248 46194;46195;46196 46195 3 FLESQEFQPSIAK ASWPHLQLVYEFFIRFLESQEFQPSIAKKY IRFLESQEFQPSIAKKYIDQKFVLQLLELF R F L A K K 1 0 0 0 0 2 2 0 0 1 1 1 0 2 1 2 0 0 0 0 0 0 13 0 1522.7668 Q16537 Q16537 161 173 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes yes 2 4.3269E-05 89.827 By matching By matching By MS/MS 1 1 1 0.9639 0.8431 19.038 3 Median 1.1752 1.1037 NaN 1 0 Median 0.9639 0.8431 NaN 1 0 Median 0.78984 0.76404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24231000 11913000 12318000 6420900 2445100 3975800 6010900 2487300 3523600 11799000 6980200 4818800 0 0 0 0 0 0 0 0 0 9305 2986 9672 46249;46250;46251 46197;46198 46198 2 FLESTDSFNNELK ELLQIEERHQEKKRKFLESTDSFNNELKRL RKFLESTDSFNNELKRLCGLKVEVDMEKIA K F L L K R 0 0 2 1 0 0 2 0 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1542.7202 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61 Q969G3 259 271 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 8.0947E-06 106.29 By MS/MS 2 0.92083 0.89228 3.1508 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92083 0.89228 3.1508 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31256000 16127000 15129000 0 0 0 0 0 0 31256000 16127000 15129000 0 0 0 0 0 0 0 0 0 9306 389 9673 46252;46253 46199;46200;46201 46199 3 FLESTDSFNNELKR ELLQIEERHQEKKRKFLESTDSFNNELKRL KFLESTDSFNNELKRLCGLKVEVDMEKIAA K F L K R L 0 1 2 1 0 0 2 0 0 0 2 1 0 2 0 2 1 0 0 0 0 0 14 1 1698.8213 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61 Q969G3 259 272 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 1.0215E-38 162.22 By MS/MS By MS/MS By MS/MS By matching 7 3 1 1 0.96689 1.0553 42.436 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.926 1.028 17.31 6 3 Median 1.3216 1.2402 83.571 3 0 Median 1.0298 1.0553 NaN 1 0 Median 0.81017 0.74405 NaN 1 0 Median 130130000 67540000 62593000 0 0 0 0 0 0 105470000 54740000 50734000 14308000 7532100 6775700 9671300 4892000 4779200 679760 376240 303520 9307 389 9674 46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265 46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212;46213;46214 46209 12 FLESYATDNEK DTKVGTIDDDPEYRKFLESYATDNEKMTST EYRKFLESYATDNEKMTSTPETLLEEIEAK K F L E K M 1 0 1 1 0 0 2 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 0 1315.5932 A0A087WYC8;Q9BZI7 A0A087WYC8 163 173 UPF3B Regulator of nonsense transcripts 3B yes no 2 0.00017784 93.111 By MS/MS By MS/MS 1 1 1.2914 1.2077 29.485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4498 1.4877 NaN 1 0 Median 1.1503 0.98044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5520300 2372100 3148200 0 0 0 0 0 0 2991900 1009300 1982600 2528400 1362800 1165600 0 0 0 0 0 0 9308 80 9675 46266;46267 46215;46216 46216 2 FLEVDEYPEHIK YMLIYRLKDPARNAKFLEVDEYPEHIKNLV NAKFLEVDEYPEHIKNLVQKERELEEQEKR K F L I K N 0 0 0 1 0 0 3 0 1 1 1 1 0 1 1 0 0 0 1 1 0 0 12 0 1517.7402 Q96K76 Q96K76 572 583 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 3 0.0070794 46.378 By MS/MS By MS/MS 2 2 0.944 0.86887 6.4756 4 Median 0.91391 0.88481 7.2451 2 2 Median 0.97364 0.85095 7.6216 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21525000 11850000 9674900 19904000 11174000 8730500 1620800 676470 944380 0 0 0 0 0 0 0 0 0 0 0 0 9309 3690 9676 46268;46269;46270;46271 46217;46218;46219 46217 3 FLEVEFLGQR CRLDGQTPHEEREDKFLEVEFLGQREAIEA EREDKFLEVEFLGQREAIEAFNAPNSSKFI K F L Q R E 0 1 0 0 0 1 2 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 10 0 1236.6503 B7ZLQ5;P28370 B7ZLQ5 545 554 SMARCA1 Probable global transcription activator SNF2L1 yes no 2 0.034259 32.841 By matching By MS/MS 1 1 1.0993 1.1812 4.8669 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0544 1.1413 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1461 1.2226 NaN 1 0 Median NaN NaN NaN 0 0 Median 2350500 1012000 1338500 0 0 0 0 0 0 1242900 523520 719340 0 0 0 1107600 488450 619160 0 0 0 9310 643 9677 46272;46273 46220 46220 1 FLEYSISDEITK PSVLNKFRIYLTLLRFLEYSISDEITKAVE LLRFLEYSISDEITKAVEDDFVEMRKNDPQ R F L T K A 0 0 0 1 0 0 2 0 0 2 1 1 0 1 0 2 1 0 1 0 0 0 12 0 1443.7133 Q9BTE3 Q9BTE3 560 571 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 1.7424E-05 97.456 By MS/MS By matching By matching 1 2 1 1.0946 0.92695 28.747 4 Median 1.1911 1.1182 NaN 1 0 Median 1.0946 0.92695 8.6959 2 0 Median 0.54177 0.57633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20638000 10408000 10230000 11708000 5822900 5884600 7189600 3671000 3518600 1740400 913580 826830 0 0 0 0 0 0 0 0 0 9311 3825 9678 46274;46275;46276;46277 46221;46222 46221 2 FLFDSVSSQNVGLR LIDEDGNNQWPEGLKFLFDSVSSQNVGLRE KFLFDSVSSQNVGLREAALHIFWNFPGIFG K F L L R E 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 3 0 0 0 2 0 0 14 0 1567.7995 O00410;H0Y8C6;E7ETV3;H0Y3V4 O00410 135 148 IPO5 Importin-5 yes no 2 5.1659E-06 94.297 By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 1.2712 1.2334 47.196 6 Median 1.1857 1.141 20.863 3 2 Median NaN NaN NaN 0 0 Median 1.4664 1.5668 NaN 1 0 Median 1.0672 0.92125 NaN 1 0 Median 2.9959 3.1837 NaN 1 1 Median NaN NaN NaN 0 0 Median 34205000 15517000 18688000 29478000 14044000 15434000 0 0 0 2177400 913030 1264400 455440 206720 248720 2093700 353180 1740500 0 0 0 9312 1460 9679 46278;46279;46280;46281;46282;46283 46223;46224;46225;46226;46227;46228;46229 46223 7 FLFEGQR ESYCQRQGVPMNSLRFLFEGQRIADNHTPK GVPMNSLRFLFEGQRIADNHTPKEAQWPTP R F L Q R I 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 895.4552 B8ZZN6;P63165;B8ZZ67;G2XKQ0 B8ZZN6 64 70 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 2 0.0031639 122.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 1 2 1.2509 1.0836 16.969 12 Median 1.1119 1.0598 20.746 2 1 Median 1.2822 1.0642 10.946 3 0 Median 1.0734 1.0836 0.93223 2 0 Median 1.1983 0.98481 4.0648 2 0 Median 1.52 1.6065 NaN 1 0 Median 1.5403 1.3081 16.036 2 0 Median 146790000 69560000 77229000 30717000 15072000 15645000 24708000 11690000 13019000 73409000 35115000 38294000 13702000 5971400 7730200 3316200 1345900 1970200 937090 366030 571060 9313 649 9680 46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295 46230;46231;46232;46233;46234;46235;46236;46237;46238;46239;46240;46241;46242;46243 46232 14 FLFENQTPAHVYYR EAMIMNREINNPMFRFLFENQTPAHVYYRW RFLFENQTPAHVYYRWKLYSILQGDSPTKW R F L Y R W 1 1 1 0 0 1 1 0 1 0 1 0 0 2 1 0 1 0 2 1 0 0 14 0 1783.8682 O15042;E7ET15 O15042 461 474 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2;3 1.2363E-08 159.83 By MS/MS By matching By MS/MS By matching 4 2 5 2 0.94399 0.9273 16.799 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89229 0.97528 23.913 4 0 Median 1.111 0.96407 8.4058 2 0 Median 0.88181 0.89154 10.461 5 0 Median 0.9984 0.81392 0.44304 2 0 Median 101050000 53038000 48013000 0 0 0 0 0 0 50172000 25565000 24607000 640840 315540 325300 48089000 26218000 21872000 2149200 939960 1209300 9314 1515 9681 46296;46297;46298;46299;46300;46301;46302;46303;46304;46305;46306;46307;46308 46244;46245;46246;46247;46248;46249;46250;46251;46252;46253;46254;46255 46249 12 FLFTTGFHTK EAEEITMISIQLAARFLFTTGFHTKKVVRG QLAARFLFTTGFHTKKVVRGSASDWYDALC R F L T K K 0 0 0 0 0 0 0 1 1 0 1 1 0 3 0 0 3 0 0 0 0 0 10 0 1197.6182 Q93008;O00507 Q93008 2051 2060 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2;3 0.00032347 81.548 By MS/MS By MS/MS By matching 3 3 1 1.2893 1.2797 14.041 7 Median 1.2893 1.2797 16.146 3 2 Median 1.5172 1.3272 17.325 3 0 Median 1.0405 1.1542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26403000 11423000 14980000 15252000 6994000 8257600 10083000 3986500 6096900 1068200 442580 625600 0 0 0 0 0 0 0 0 0 9315 3573 9682 46309;46310;46311;46312;46313;46314;46315 46256;46257;46258;46259;46260;46261 46257 6 FLFVDADQIVR KILFLDVLFPLVVDKFLFVDADQIVRTDLK VVDKFLFVDADQIVRTDLKELRDFNLDGAP K F L V R T 1 1 0 2 0 1 0 0 0 1 1 0 0 2 0 0 0 0 0 2 0 0 11 0 1321.703 Q9NYU2 Q9NYU2 1354 1364 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.0001677 80.239 By MS/MS By MS/MS 1 1 1.2278 1.1011 26.156 2 Median 0.96243 0.91519 NaN 1 0 Median 1.5663 1.3248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8131400 3476600 4654900 5477300 2479400 2997900 2654100 997170 1657000 0 0 0 0 0 0 0 0 0 0 0 0 9316 4179 9683 46316;46317 46262;46263;46264 46262 3 FLGDEQDQITFVTR LVSCGMMEALLKVIKFLGDEQDQITFVTRA KFLGDEQDQITFVTRAVRVVDLITNLDMAA K F L T R A 0 1 0 2 0 2 1 1 0 1 1 0 0 2 0 0 2 0 0 1 0 0 14 0 1667.8155 Q7Z6Z7;A0A087X1S3 Q7Z6Z7 418 431 HUWE1 E3 ubiquitin-protein ligase HUWE1 no no 2 2.2174E-05 99.522 By MS/MS 1 2.0209 1.902 NaN 1 Median 2.0209 1.902 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8504300 3155300 5349100 8504300 3155300 5349100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9317 3253;123 9684 46318 46265 46265 1 FLGDIEVWDQAEK FGFSFKLNLSTRPEKFLGDIEVWDQAEKQL EKFLGDIEVWDQAEKQLENSLNEFGEKWEL K F L E K Q 1 0 0 2 0 1 2 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 13 0 1548.746 P26639 P26639 505 517 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 1.0093E-05 150.04 By MS/MS By MS/MS By MS/MS 2 2 2 1.1792 1.1562 12.324 6 Median 1.1792 1.0963 6.9834 2 0 Median 1.2398 1.0786 20.828 2 0 Median 1.1526 1.231 8.3145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50214000 23254000 26960000 22819000 10626000 12192000 21415000 10022000 11393000 5980600 2605200 3375400 0 0 0 0 0 0 0 0 0 9318 2147 9685 46319;46320;46321;46322;46323;46324 46266;46267;46268;46269;46270;46271;46272 46271 7 FLGDRDFNQLSSR ENDDKPEGLSPNVNRFLGDRDFNQLSSRDK NRFLGDRDFNQLSSRDKDLSMARFTYEYSR R F L S R D 0 2 1 2 0 1 0 1 0 0 2 0 0 2 0 2 0 0 0 0 0 0 13 1 1553.7587 CON__Q3SZ57 CON__Q3SZ57 334 346 yes yes 2;3 3.7738E-05 94.688 By MS/MS By MS/MS 3 1 0.04537 0.0447 125.81 3 Median 0.037981 0.038173 22.323 2 2 Median 0.36516 0.33164 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63290000 62698000 591680 60078000 59713000 364700 3211800 2984800 226980 0 0 0 0 0 0 0 0 0 0 0 0 + 9319 778 9686 46325;46326;46327;46328 46273;46274;46275;46276 46273 4 FLGDYVENLNK ______________________________ LLNRFLGDYVENLNKSQLKLGIWGGNVALD R F L N K S 0 0 2 1 0 0 1 1 0 0 2 1 0 1 0 0 0 0 1 1 0 0 11 0 1310.6507 Q709C8 Q709C8 14 24 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.00022848 83.948 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9320 3205 9687 46329 46277 46277 1 FLGELYNYR VNQPKFNQRRISSAKFLGELYNYRMVESAV RISSAKFLGELYNYRMVESAVIFRTLYSFT K F L Y R M 0 1 1 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 2 0 0 0 9 0 1173.5819 Q9HAU5 Q9HAU5 874 882 UPF2 Regulator of nonsense transcripts 2 yes yes 2 0.006443 54.549 By MS/MS By matching By matching 1 3 1 0.98024 0.88489 10.544 5 Median 0.98024 0.96985 NaN 1 0 Median 0.89073 0.78248 8.369 3 0 Median NaN NaN NaN 0 0 Median 1.0403 0.90954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4686900 2319400 2367600 2753900 1338700 1415200 1692400 865440 826960 0 0 0 240590 115250 125340 0 0 0 0 0 0 9321 4011 9688 46330;46331;46332;46333;46334 46278 46278 1 FLGGDMEHTHLVK KSAAEKRRQLIQESKFLGGDMEHTHLVKGL SKFLGGDMEHTHLVKGLDFALLQKVRAEIA K F L V K G 0 0 0 1 0 0 1 2 2 0 2 1 1 1 0 0 1 0 0 1 0 0 13 0 1482.7289 Q13123;E7EQZ7;D6REL4 Q13123 152 164 IK Protein Red yes no 3 0.0012713 39.73 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1.065 1.0744 16.963 7 Median 1.4149 1.4083 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.065 1.0744 NaN 1 0 Median 1.0773 0.9271 21.237 2 0 Median 0.98838 0.99192 3.9239 2 0 Median 1.3255 1.0956 NaN 1 0 Median 42518000 20978000 21540000 1617100 840590 776490 0 0 0 13101000 6438000 6662500 3932300 1889000 2043300 22388000 11074000 11314000 1479500 736270 743250 9322 2787 9689 46335;46336;46337;46338;46339;46340;46341 46279;46280;46281;46282;46283 46281 5 FLGLIKK IFQKIKDEKSPEWSKFLGLIKKFVTDSNAV EKSPEWSKFLGLIKKFVTDSNAVVQLKGLE K F L K K F 0 0 0 0 0 0 0 1 0 1 2 2 0 1 0 0 0 0 0 0 0 0 7 1 817.54256 Q14008;E9PQH5 Q14008 49 55 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.042247 50.12 By matching By MS/MS By matching By matching By matching 1 2 1 1 2 1.3263 1.3876 20.758 7 Median 1.069 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2738 1.4648 7.6563 2 0 Median 1.7999 1.6761 NaN 1 0 Median 1.5643 1.6342 NaN 1 0 Median 1.2082 1.0863 14.248 2 0 Median 14553000 5688400 8864900 1358200 642840 715330 0 0 0 9619900 3677900 5942100 526990 179290 347690 1063200 394710 668460 1985000 793710 1191300 9323 2850 9690 46342;46343;46344;46345;46346;46347;46348 46284;46285 46284 2 FLGLTER NFSTLTLLLGQRFGRFLGLTERDVELLYPV LLGQRFGRFLGLTERDVELLYPVKEKVFYS R F L E R D 0 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 834.45995 P07099 P07099 271 277 EPHX1 Epoxide hydrolase 1 yes yes 2 0.010865 81.297 By MS/MS 1 1.1207 1.0911 NaN 1 Median 1.1207 1.0911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6208500 3167400 3041100 6208500 3167400 3041100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9324 1879 9691 46349 46286;46287 46286 2 FLGNAPCGHYTFK ERTLATLSENNMEAKFLGNAPCGHYTFKFP AKFLGNAPCGHYTFKFPQAMRTESNLGAKV K F L F K F 1 0 1 0 1 0 0 2 1 0 1 1 0 2 1 0 1 0 1 0 0 0 13 0 1510.7027 Q9H2W6 Q9H2W6 204 216 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 3 0.0076602 26.969 By MS/MS 1 1.8329 1.5576 NaN 1 Median NaN NaN NaN 0 0 Median 1.8329 1.5576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1724000 781610 942380 0 0 0 1724000 781610 942380 0 0 0 0 0 0 0 0 0 0 0 0 9325 3948 9692 46350 46288 46288 1 FLGRPFPFKDK GSQTGGFAGIKKLQKFLGRPFPFKDKLVVE KLQKFLGRPFPFKDKLVVECFSQLKVLNKV K F L D K L 0 1 0 1 0 0 0 1 0 0 1 2 0 3 2 0 0 0 0 0 0 0 11 2 1350.7448 Q9NU22 Q9NU22 2801 2811 MDN1 Midasin yes yes 3 0.0029254 39.58 By MS/MS 1 0.93013 1.2343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93013 1.2343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8348100 4680200 3667900 0 0 0 0 0 0 8348100 4680200 3667900 0 0 0 0 0 0 0 0 0 9326 4112 9693 46351 46289;46290 46289 2 FLGSDEEDKDSLQELSTEQK GVHSVGLTWIHKLHKFLGSDEEDKDSLQEL EEDKDSLQELSTEQKCFVEHILCTKPLPCR K F L Q K C 0 0 0 3 0 2 4 1 0 0 3 2 0 1 0 3 1 0 0 0 0 0 20 1 2297.0547 Q99567;J3KMX1 Q99567 427 446 NUP88 Nuclear pore complex protein Nup88 yes no 3 4.3647E-14 102.58 By matching By MS/MS By matching By matching 1 2 1 1 1.0895 1.142 30.188 5 Median NaN NaN NaN 0 0 Median 0.96696 0.93244 NaN 1 0 Median 1.0074 1.1361 12.821 2 0 Median 1.169 1.142 NaN 1 0 Median 1.8158 2.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median 27923000 13172000 14751000 0 0 0 515180 272720 242450 22284000 10730000 11554000 1558600 607610 951020 3564600 1561200 2003400 0 0 0 9327 3753 9694 46352;46353;46354;46355;46356 46291;46292;46293 46293 3 FLGSGGFIGYAPNLSK RRLETKYPVVSDGKRFLGSGGFIGYAPNLS LGSGGFIGYAPNLSKLVAEWEGQDSDSDQL R F L S K L 1 0 1 0 0 0 0 4 0 1 2 1 0 2 1 2 0 0 1 0 0 0 16 0 1626.8406 Q02809;Q5JXB8;Q5JXB7 Q02809 151 166 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 2 9.7561E-05 66.267 By MS/MS 2 0.92336 0.84188 1.2458 2 Median 0.92336 0.84188 1.2458 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19300000 10038000 9261900 19300000 10038000 9261900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9328 2702 9695 46357;46358 46294;46295 46295 2 FLGSVIMR VPGLAGSYLCSPLERFLGSVIMRRHLQRII LCSPLERFLGSVIMRRHLQRIIQQETLQLI R F L M R R 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 8 0 921.51061 O60244;H7C3E5 O60244 1210 1217 MED14 Mediator of RNA polymerase II transcription subunit 14 yes no 2 0.0074447 67.032 By MS/MS By matching 2 1 1.1616 1.2603 12.384 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0367 1.1428 15.586 2 0 Median 1.4402 1.2603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6052900 3051100 3001800 0 0 0 0 0 0 5802400 2951000 2851400 250540 100050 150490 0 0 0 0 0 0 9329 1606 9696 46359;46360;46361 46296 46296 1 FLGTEVLLR SEEQAMKAERLNRRRFLGTEVLLRLISEAQ RLNRRRFLGTEVLLRLISEAQIQEFGVNFS R F L L R L 0 1 0 0 0 0 1 1 0 0 3 0 0 1 0 0 1 0 0 1 0 0 9 0 1046.6124 B9ZVT1;Q8IXT5 B9ZVT1 465 473 RBM12B RNA-binding protein 12B yes no 2 0.0012806 83.265 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1.0412 1.1183 14.908 5 Median 0.92008 0.92915 NaN 1 0 Median 1.4506 1.2839 NaN 1 0 Median 1.0295 1.1183 NaN 1 0 Median 1.5352 1.3551 NaN 1 0 Median 1.0412 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median 9187900 4176600 5011300 1021800 531840 489990 630280 256560 373720 1511200 901580 609600 193520 83765 109750 5831100 2402900 3428200 0 0 0 9330 658 9697 46362;46363;46364;46365;46366 46297;46298 46297 2 FLGTSGQNVSDIFR QLVTNPYQATIDGVRFLGTSGQNVSDIFRY RFLGTSGQNVSDIFRYSSMEDHLEILEWTL R F L F R Y 0 1 1 1 0 1 0 2 0 1 1 0 0 2 0 2 1 0 0 1 0 0 14 0 1539.7682 F8W8R3;A0A087WWF6;P49005;H7C1B3 F8W8R3 341 354 POLD2 DNA polymerase delta subunit 2 yes no 2 6.224E-16 141.93 By MS/MS By MS/MS By MS/MS 2 1 2 0.79859 0.76213 19.508 5 Median 0.78952 0.75369 1.5747 2 2 Median 0.68337 0.57913 NaN 1 1 Median 0.94025 0.92874 0.96136 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49022000 25695000 23327000 23074000 12637000 10437000 5172800 2677400 2495400 20775000 10380000 10394000 0 0 0 0 0 0 0 0 0 9331 58 9698 46367;46368;46369;46370;46371 46299;46300;46301;46302;46303 46301 5 FLGTVEK LPKGTVSFHSHSDHRFLGTVEKEATFSNPK FHSHSDHRFLGTVEKEATFSNPKTTSPNKG R F L E K E 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 792.43815 O75534;E9PLT0 O75534 428 434 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.057914 49.358 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 823330 0 823330 0 0 0 0 0 0 0 0 0 823330 0 823330 0 0 0 0 0 0 9332 1684 9699 46372 46304 46304 1 FLHDNMVEIPNR NDVSLMDRPLCERRKFLHDNMVEIPNRIMF RRKFLHDNMVEIPNRIMFSEMKRVTKALDL K F L N R I 0 1 2 1 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 12 0 1483.7242 P49916;K7EJR4 P49916 616 627 LIG3 DNA ligase 3 yes no 2;3 3.9843E-05 88.187 By MS/MS By MS/MS By matching 3 4 1 1.013 0.96133 28.938 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76475 0.80883 22.349 3 1 Median 1.1925 1.0179 25.521 4 0 Median 1.3647 1.4576 NaN 1 0 Median NaN NaN NaN 0 0 Median 61489000 32289000 29200000 0 0 0 0 0 0 53064000 28521000 24543000 7195500 3281500 3914000 1229300 486250 743060 0 0 0 9333 2406 9700;9701 46373;46374;46375;46376;46377;46378;46379;46380 46305;46306;46307;46308;46309;46310;46311;46312 46306 1120 8 FLHETNEIADQVSR AERCFSALGQVAKARFLHETNEIADQVSRE RFLHETNEIADQVSREYGGEGTDFYQVRAR R F L S R E 1 1 1 1 0 1 2 0 1 1 1 0 0 1 0 1 1 0 0 1 0 0 14 0 1657.806 Q9UG01 Q9UG01 659 672 IFT172 Intraflagellar transport protein 172 homolog yes yes 3 0.00020248 62.035 By MS/MS By matching By MS/MS 1 1 1 1.3541 1.1453 51.62 3 Median 0.76986 0.77155 NaN 1 0 Median 1.3541 1.1453 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4384 2.1473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7006500 3753500 3253000 4905600 2985100 1920500 954000 433200 520800 0 0 0 1146900 335140 811730 0 0 0 0 0 0 9334 4261 9702 46381;46382;46383 46313;46314 46313 2 FLHHLIIEEK RKPSDSVHITNDDERFLHHLIIEEKEKDSF NDDERFLHHLIIEEKEKDSFTAVVITGVQP R F L E K E 0 0 0 0 0 0 2 0 2 2 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1277.7132 A6NHR9 A6NHR9 305 314 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 9.8184E-05 107.21 By MS/MS By MS/MS By MS/MS 1 3 3 1.1509 1.1174 30.39 7 Median NaN NaN NaN 0 0 Median 1.1056 0.98026 NaN 1 0 Median 0.97714 1.0753 28.84 3 1 Median 1.3956 1.2538 30.351 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53689000 24962000 28727000 0 0 0 5375200 2445000 2930200 35375000 17131000 18244000 12938000 5385900 7552500 0 0 0 0 0 0 9335 518 9703 46384;46385;46386;46387;46388;46389;46390 46315;46316;46317;46318;46319;46320;46321;46322 46319 8 FLHHLIIEEKEK RKPSDSVHITNDDERFLHHLIIEEKEKDSF DERFLHHLIIEEKEKDSFTAVVITGVQPEH R F L E K D 0 0 0 0 0 0 3 0 2 2 2 2 0 1 0 0 0 0 0 0 0 0 12 1 1534.8508 A6NHR9 A6NHR9 305 316 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.00096379 67.214 By MS/MS 1 4.4668 5.1735 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.4668 5.1735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13378000 3233200 10145000 0 0 0 0 0 0 13378000 3233200 10145000 0 0 0 0 0 0 0 0 0 9336 518 9704 46391 46323 46323 1 FLHMLSNPVDLSNPAIISSTPK PPEMDNECVAQTWFRFLHMLSNPVDLSNPA PVDLSNPAIISSTPKFQEQFLNVSGMPQEL R F L P K F 1 0 2 1 0 0 0 0 1 2 3 1 1 1 3 4 1 0 0 1 0 0 22 0 2380.2461 Q86X10;A2A2F0 Q86X10 286 307 RALGAPB Ral GTPase-activating protein subunit beta yes no 3 0.0009595 37.672 By MS/MS 2 0.74028 0.80018 16.001 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74028 0.80018 16.001 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5267400 2801100 2466300 0 0 0 0 0 0 5267400 2801100 2466300 0 0 0 0 0 0 0 0 0 9337 3298 9705 46392;46393 46324;46325 46324 2 FLHPEVTETMEK LSRLTLDDIERLASRFLHPEVTETMEKGFS ASRFLHPEVTETMEKGFSK___________ R F L E K G 0 0 0 0 0 0 3 0 1 0 1 1 1 1 1 0 2 0 0 1 0 0 12 0 1459.7017 P11441 P11441 142 153 UBL4A Ubiquitin-like protein 4A yes yes 2;3 0.00024271 61.56 By MS/MS By MS/MS 2 1 0.82481 0.77947 13.95 3 Median 0.88618 0.83759 10.169 2 1 Median 0.79181 0.68094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15450000 8207300 7242400 12486000 6691500 5794600 2963600 1515800 1447900 0 0 0 0 0 0 0 0 0 0 0 0 9338 1965 9706 46394;46395;46396 46326;46327;46328;46329;46330 46326 5 FLHQDIDSGQGIR VRFVCNDDVYSGPLKFLHQDIDSGQGIRNT LKFLHQDIDSGQGIRNTYFEFETALACVPS K F L I R N 0 1 0 2 0 2 0 2 1 2 1 0 0 1 0 1 0 0 0 0 0 0 13 0 1484.7372 P11717 P11717 1053 1065 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2;3 1.2283E-08 128.01 By MS/MS By MS/MS 4 4 1.4798 1.3442 13.051 8 Median 1.3492 1.3151 10.863 4 0 Median 1.6158 1.3731 16.717 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202750000 88038000 114710000 58111000 25507000 32604000 144640000 62531000 82110000 0 0 0 0 0 0 0 0 0 0 0 0 9339 1969 9707 46397;46398;46399;46400;46401;46402;46403;46404 46331;46332;46333;46334;46335;46336;46337;46338;46339;46340;46341;46342;46343 46339 12 FLHSEALLAVAQNR LMCEINVMEAVRDIRFLHSEALLAVAQNRW RFLHSEALLAVAQNRWLHIYDNQGIELHCI R F L N R W 3 1 1 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 0 1 0 0 14 0 1567.8471 O15213;H0Y6G3 O15213 244 257 WDR46 WD repeat-containing protein 46 no no 3 3.2409E-05 81.709 By MS/MS By matching 3 2 1.0684 1.0126 48.437 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0684 1.0874 17.065 3 0 Median 0.71946 0.62927 66.108 2 0 Median 16547000 7422200 9125100 0 0 0 0 0 0 0 0 0 0 0 0 15722000 7030500 8691300 825470 391720 433750 9340 1531 9708 46405;46406;46407;46408;46409 46344;46345 46344 2 FLHSSIFEQDSK HKEEEQERQELFASRFLHSSIFEQDSKRLQ ASRFLHSSIFEQDSKRLQHLERKEEDSDFI R F L S K R 0 0 0 1 0 1 1 0 1 1 1 1 0 2 0 3 0 0 0 0 0 0 12 0 1436.6936 Q96T58 Q96T58 1530 1541 SPEN Msx2-interacting protein yes yes 3 0.00032033 56.087 By MS/MS By matching 1 1 0.98273 1.0486 17.775 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1045 1.189 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87437 0.92475 NaN 1 0 Median NaN NaN NaN 0 0 Median 7132700 3120000 4012700 0 0 0 0 0 0 4832600 1800000 3032600 0 0 0 2300200 1320100 980120 0 0 0 9341 3741 9709 46410;46411 46346 46346 1 FLHSSIFEQDSKR HKEEEQERQELFASRFLHSSIFEQDSKRLQ SRFLHSSIFEQDSKRLQHLERKEEDSDFIS R F L K R L 0 1 0 1 0 1 1 0 1 1 1 1 0 2 0 3 0 0 0 0 0 0 13 1 1592.7947 Q96T58 Q96T58 1530 1542 SPEN Msx2-interacting protein yes yes 3 1.8809E-07 102.66 By MS/MS 1 0.84164 0.97494 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84164 0.97494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6921900 3076800 3845200 0 0 0 0 0 0 6921900 3076800 3845200 0 0 0 0 0 0 0 0 0 9342 3741 9710 46412 46347 46347 1 FLHTEIR DHASLKILARLMTAKFLHTEIREKGGAYGG LARLMTAKFLHTEIREKGGAYGGGAKLSHN K F L I R E 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 7 0 914.4974 Q5JRX3;A0A0A0MRX9;B1APQ0 Q5JRX3 894 900 PITRM1 Presequence protease, mitochondrial yes no 2 0.024489 86.866 By MS/MS By MS/MS 1 1 1.7759 1.5132 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7759 1.5132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1436600 613120 823510 0 0 0 0 0 0 0 0 0 1436600 613120 823510 0 0 0 0 0 0 9343 3050 9711 46413;46414 46348;46349 46349 2 FLHTYSAATQDLQAK AQASALHLNAQQVSRFLHTYSAATQDLQAK FLHTYSAATQDLQAKELHQLQNLFSKASAD R F L A K E 3 0 0 1 0 2 0 0 1 0 2 1 0 1 0 1 2 0 1 0 0 0 15 0 1692.8471 Q8TEQ8 Q8TEQ8 377 391 PIGO GPI ethanolamine phosphate transferase 3 yes yes 3 0.0028842 29.979 By MS/MS 1 1.5886 1.586 NaN 1 Median 1.5886 1.586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6877400 2456600 4420800 6877400 2456600 4420800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9344 3479 9712 46415 46350 46350 1 FLHVFFSSPLPGEEPIGR KSEKDAVSREIRLKRFLHVFFSSPLPGEEP VFFSSPLPGEEPIGRVEPVGNAPLLALVHK R F L G R V 0 1 0 0 0 0 2 2 1 1 2 0 0 3 3 2 0 0 0 1 0 0 18 0 2028.0469 Q14669 Q14669 1189 1206 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.021952 15.942 By MS/MS 1 0.51876 0.57569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51876 0.57569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1914400 1225200 689200 0 0 0 0 0 0 1914400 1225200 689200 0 0 0 0 0 0 0 0 0 9345 2886 9713 46416 46351;46352 46351 2 FLIATGERPR ATNNKGKEKIYSAERFLIATGERPRYLGIP YSAERFLIATGERPRYLGIPGDKEYCISSD R F L P R Y 1 2 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 10 1 1158.6509 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3 E9PIR7 157 166 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.00027905 133.86 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.1189 1.1807 27.495 5 Median 1.1943 1.2329 6.1243 2 0 Median 0.87264 0.78696 NaN 1 0 Median 1.1771 1.2713 NaN 1 0 Median 0.79452 0.73101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28304000 13596000 14708000 13855000 5996000 7859200 9120000 4966800 4153200 1359700 481110 878590 3969500 2152200 1817300 0 0 0 0 0 0 9346 11 9714 46417;46418;46419;46420;46421 46353;46354;46355;46356;46357 46354 5 FLIDGFPR REMDQTMAANAQKNKFLIDGFPRNQDNLQG ANAQKNKFLIDGFPRNQDNLQGWNKTMDGK K F L P R N 0 1 0 1 0 0 0 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 8 0 963.5178 P30085;Q5T0D2;A0A494BXC7 P30085 89 96 CMPK1 UMP-CMP kinase yes no 2 0.0094683 60.76 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1 0.982 0.93272 14.868 9 Median 0.91126 0.87733 8.7811 2 0 Median 1.0238 0.87826 14.23 2 0 Median 0.90531 0.93241 0.047162 2 0 Median 1.3284 1.1518 NaN 1 0 Median 0.89475 0.91051 NaN 1 0 Median 1.5372 1.2719 NaN 1 0 Median 44259000 22055000 22204000 37203000 18431000 18772000 2725600 1369500 1356100 3643000 1938700 1704300 150350 65441 84909 484590 225330 259270 52483 25272 27211 9347 2187 9715 46422;46423;46424;46425;46426;46427;46428;46429;46430 46358;46359;46360;46361;46362;46363 46361 6 FLIDNPSEK SIILTYRTTPGTLARFLIDNPSEKITEIEL PGTLARFLIDNPSEKITEIELRKRVKLEGK R F L E K I 0 0 1 1 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 9 0 1061.5393 Q9P2I0 Q9P2I0 367 375 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.00091857 90.657 By matching By MS/MS By MS/MS 1 1 1 0.77256 0.83965 15.887 3 Plateau NaN NaN NaN 0 0 Median 0.70025 0.63129 NaN 1 0 Median 0.77256 0.83965 NaN 1 0 Median 0.94774 0.82194 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19129000 10370000 8759000 0 0 0 825180 473100 352090 15797000 8775300 7021700 2506600 1121400 1385200 0 0 0 0 0 0 9348 4223 9716 46431;46432;46433 46364;46365;46366 46365 3 FLILPDMLK VAQLEQVYIRGSKIRFLILPDMLKNAPMLK RGSKIRFLILPDMLKNAPMLKSMKNKNQGS R F L L K N 0 0 0 1 0 0 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 9 0 1088.6304 P62318 P62318 70 78 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 0.0039122 72.485 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 4 2 10 6 0.95155 0.89778 16.82 32 Median 0.99799 0.93692 6.9112 5 0 Median 1.1714 0.96966 21.194 5 0 Median 0.8923 0.87092 18.3 4 0 Median 1.0223 0.83338 0.80995 2 0 Median 0.9375 1.0148 15.257 10 0 Median 0.93932 0.7828 14.711 6 0 Median 548320000 276670000 271650000 130780000 65077000 65705000 35464000 16322000 19142000 171000000 88053000 82946000 5938000 2832500 3105500 194070000 98850000 95224000 11060000 5532200 5527800 9349 2587 9717;9718 46434;46435;46436;46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447;46448;46449;46450;46451;46452;46453;46454;46455;46456;46457;46458;46459;46460;46461;46462;46463;46464;46465 46367;46368;46369;46370;46371;46372;46373;46374;46375;46376;46377;46378;46379;46380;46381;46382;46383;46384;46385;46386 46369 1255 20 FLILQGEVEQIAMMKPK GNLLRSHGIDLDHNRFLILQGEVEQIAMMK ILQGEVEQIAMMKPKGQTEHDEGMLEYLED R F L P K G 1 0 0 0 0 2 2 1 0 2 2 2 2 1 1 0 0 0 0 1 0 0 17 1 1974.0682 Q9NTJ3;E9PD53;C9JR83;C9JVD8;C9J578 Q9NTJ3 225 241 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0017851 29.341 By MS/MS By matching By matching 1 1 1 0.91522 0.91023 12.002 3 Plateau 0.91522 0.91023 NaN 1 0 Median 0.91212 0.88463 NaN 1 0 Median 0.63815 0.72998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7269100 3712300 3556800 3750700 1870500 1880200 2092900 1013600 1079300 1425500 828200 597310 0 0 0 0 0 0 0 0 0 9350 4108 9719 46466;46467;46468 46387 46387 1 FLINLEGGDIR EPREMTADVIELKGKFLINLEGGDIREESS LKGKFLINLEGGDIREESSYKVIVMPTTKE K F L I R E 0 1 1 1 0 0 1 2 0 2 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1245.6717 Q9NSE4 Q9NSE4 960 970 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.0018837 56.563 By MS/MS 1 1.3901 1.2336 NaN 1 Median NaN NaN NaN 0 0 Median 1.3901 1.2336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1176300 471420 704880 0 0 0 1176300 471420 704880 0 0 0 0 0 0 0 0 0 0 0 0 9351 4103 9720 46469 46388 46388 1 FLINLEGGDIREESSYK EPREMTADVIELKGKFLINLEGGDIREESS INLEGGDIREESSYKVIVMPTTKEKCPRCW K F L Y K V 0 1 1 1 0 0 3 2 0 2 2 1 0 1 0 2 0 0 1 0 0 0 17 1 1968.9793 Q9NSE4 Q9NSE4 960 976 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3 0.032274 24.538 By MS/MS 1 1.2257 1.2773 NaN 1 Median 1.2257 1.2773 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12690000 4928900 7761500 12690000 4928900 7761500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9352 4103 9721 46470 46389 46389 1 FLINPELIISR GGGVTSAGLVQEEIRFLINPELIISRLFTE EEIRFLINPELIISRLFTEVLDHNECLIIT R F L S R L 0 1 1 0 0 0 1 0 0 3 2 0 0 1 1 1 0 0 0 0 0 0 11 0 1313.7707 Q86W56 Q86W56 759 769 PARG Poly(ADP-ribose) glycohydrolase yes yes 2 0.004516 47.823 By MS/MS By matching By matching 3 1 1 0.90656 0.8513 17.351 5 Median 0.77959 0.78274 6.9879 3 0 Median 1 0.88171 NaN 1 0 Median 1.1218 1.1603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2284700 1208900 1075900 1612700 877090 735620 479290 235690 243600 192740 96098 96640 0 0 0 0 0 0 0 0 0 9353 3291 9722 46471;46472;46473;46474;46475 46390;46391 46390 2 FLIPDYNDEIR EAYARMGHALEEIKKFLIPDYNDEIRQAQL EIKKFLIPDYNDEIRQAQLQELTYLNGGSE K F L I R Q 0 1 1 2 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1393.6878 O75525;E5RG12;E5RJZ9;H0YAQ1;H0YAQ3 O75525 154 164 KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 3 yes no 2 0.00015337 82.749 By matching By MS/MS 1 2 0.57465 0.62342 261.3 3 Median NaN NaN NaN 0 0 Median 55.402 51.926 NaN 1 0 Median 0.54514 0.56395 14.177 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21439000 8929200 12510000 0 0 0 6963100 69076 6894000 14476000 8860200 5615900 0 0 0 0 0 0 0 0 0 9354 1680 9723 46476;46477;46478 46392;46393;46394 46393 3 FLIPNASQAESK ELRDICNDVLSLLEKFLIPNASQAESKVFY LEKFLIPNASQAESKVFYLKMKGDYYRYLA K F L S K V 2 0 1 0 0 1 1 0 0 1 1 1 0 1 1 2 0 0 0 0 0 0 12 0 1303.6772 P63104;E7EX29;E7ESK7;B0AZS6 P63104 104 115 YWHAZ 14-3-3 protein zeta/delta yes no 2 3.1802E-06 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 1 3 1 0.98121 0.88865 26.07 15 Median 0.95095 0.88865 43.63 5 1 Median 1.026 0.8614 15.403 3 1 Median 0.91758 0.86956 5.9833 2 0 Median 1.0245 0.85151 NaN 1 0 Median 0.96609 0.99147 14.468 3 0 Plateau 1.0926 0.89971 NaN 1 0 Median 2530200000 1314700000 1215500000 1769700000 930160000 839590000 226550000 111830000 114710000 377220000 196380000 180840000 41742000 20270000 21472000 93318000 45810000 47509000 21646000 10300000 11346000 9355 2618 9724 46479;46480;46481;46482;46483;46484;46485;46486;46487;46488;46489;46490;46491;46492;46493;46494;46495 46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405;46406;46407;46408;46409;46410;46411;46412;46413;46414;46415;46416 46407 22 FLIQNVLR DVLKDVLLPWYNAYRFLIQNVLRLQKEEEI PWYNAYRFLIQNVLRLQKEEEIEFLYNENT R F L L R L 0 1 1 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1001.6022 P41252;A0A0A0MSX9;J3KR24 P41252 662 669 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0031659 100.82 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 2 1.1664 1.0952 12.828 9 Median 1.2268 1.185 2.8273 3 0 Median 1.1272 0.96493 17.903 2 0 Median 1.1434 1.2573 NaN 1 0 Median 1.1664 0.99303 NaN 1 0 Median 0.94897 1.0044 4.0562 2 0 Median NaN NaN NaN 0 0 Median 60074000 26784000 33290000 25794000 11238000 14555000 24115000 10436000 13679000 3882300 1733800 2148400 2269500 1087700 1181800 4013200 2288100 1725100 0 0 0 9356 2302 9725 46496;46497;46498;46499;46500;46501;46502;46503;46504 46417;46418;46419;46420;46421;46422;46423;46424;46425;46426;46427;46428 46420 12 FLISYDR LTRNPPSESEGSDGRFLISYDRTLVIKEVS ESEGSDGRFLISYDRTLVIKEVSSEDIADM R F L D R T 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 7 0 912.47052 Q8TBX8;F8VNT5;F8VU68 Q8TBX8 141 147 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes no 2 0.0057974 100.74 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1.1819 1.0994 5.3349 6 Median 1.1233 1.1086 NaN 1 0 Median 1.1835 1.0328 7.6572 2 0 Median 1.1213 1.1199 NaN 1 1 Median 1.2646 1.1033 3.8644 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16315000 7473600 8841100 4444100 2176300 2267700 2442300 1067100 1375200 6293600 2851700 3441900 3134800 1378500 1756200 0 0 0 0 0 0 9357 3462 9726 46505;46506;46507;46508;46509;46510 46429;46430;46431;46432 46431 4 FLITGADQNR CDNHKKQDPDVPFWRFLITGADQNRELKMW VPFWRFLITGADQNRELKMWCTVSWTCLQT R F L N R E 1 1 1 1 0 1 0 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1133.5829 Q6P2E9 Q6P2E9 369 378 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.00038325 97.431 By MS/MS By MS/MS 1 1 1.1269 1.0796 15.884 2 Median NaN NaN NaN 0 0 Median 1.447 1.2079 NaN 1 0 Median 0.87755 0.96491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24791000 11370000 13421000 0 0 0 12638000 5367700 7270600 12153000 6002100 6150400 0 0 0 0 0 0 0 0 0 9358 3155 9727 46511;46512 46433;46434;46435;46436 46434 4 FLITHNPTNATLNK MNRPAPVEISYENMRFLITHNPTNATLNKF RFLITHNPTNATLNKFTEELKKYGVTTLVR R F L N K F 1 0 3 0 0 0 0 0 1 1 2 1 0 1 1 0 3 0 0 0 0 0 14 0 1582.8467 Q12974;E9PMY3;E9PML8;E9PJC0;E9PRR9 Q12974 16 29 PTP4A2 Protein tyrosine phosphatase type IVA 2 no no 2;3 2.7363E-05 82.55 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 0.9715 0.94448 13.953 8 Plateau 0.98539 0.9264 NaN 1 0 Median 1.1781 1.0066 22.522 3 0 Plateau 0.97799 0.91661 6.3872 2 1 Median 0.97874 0.81115 3.3433 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85481000 43713000 41768000 36317000 17665000 18652000 13882000 7636800 6245300 25503000 13661000 11841000 9778700 4749900 5028800 0 0 0 0 0 0 9359 2776 9728 46513;46514;46515;46516;46517;46518;46519;46520 46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447 46441 11 FLIVAHDDGR GNVTCEREVPGPDCRFLIVAHDDGRWSLQS GPDCRFLIVAHDDGRWSLQSEAHRRYFGGT R F L G R W 1 1 0 2 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1141.588 Q16658 Q16658 91 100 FSCN1 Fascin yes yes 2 0.00035174 101.64 By MS/MS By MS/MS By MS/MS 2 1 1 1.127 1.0793 23.864 4 Median 1.3342 1.3195 27.238 2 0 Median 1.0891 0.91181 NaN 1 0 Median 1.0576 1.0702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118100000 54019000 64079000 53010000 23574000 29437000 56703000 26253000 30449000 8385800 4192700 4193200 0 0 0 0 0 0 0 0 0 9360 2993 9729 46521;46522;46523;46524 46448;46449;46450;46451;46452 46451 5 FLIWDTAGQER SFMTKTVPCGNELHKFLIWDTAGQERGGSP ELHKFLIWDTAGQERGGSPEGC________ K F L E R G 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 11 0 1334.6619 J3QR51;Q9UL26;Q13636 J3QR51 57 67 RAB31;RAB22A Ras-related protein Rab-22A;Ras-related protein Rab-31 yes no 2 0.00020977 99.802 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.3743 1.1742 95.992 6 Median 1.3329 1.2975 11.394 2 0 Median 0.46018 0.38745 154.08 2 0 Median 1.9323 1.8248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3687 1.0792 NaN 1 0 Median 17507000 7302700 10205000 13619000 5637000 7981800 1545500 990870 554600 2255200 640390 1614800 0 0 0 0 0 0 87793 34424 53369 9361 1348 9730 46525;46526;46527;46528;46529;46530 46453;46454;46455;46456;46457 46453 5 FLKEEVNIAR CWEPIEKYINEQYEKFLKEEVNIARKKRIP EQYEKFLKEEVNIARKKRIPDTRVHCCLYF K F L A R K 1 1 1 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1217.6768 B1AHR1;A0A2R8Y4H2;Q9UH03;B1AHR2 B1AHR1 89 98 SEPT3 Neuronal-specific septin-3 yes no 2;3 9.7684E-06 143.03 By MS/MS By MS/MS 2 1 0.83101 0.94585 30.567 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72151 0.82058 20.092 2 0 Median 1.4979 1.3113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17577000 10243000 7333600 0 0 0 0 0 0 15734000 9579900 6153800 1842900 663160 1179700 0 0 0 0 0 0 9362 363 9731 46531;46532;46533 46458;46459;46460;46461;46462;46463 46459 6 FLKPLLIGELAPEEPSQDHGK DAFRAFHPDLEFVGKFLKPLLIGELAPEEP IGELAPEEPSQDHGKNSKITEDFRALRKTA K F L G K N 1 0 0 1 0 1 3 2 1 1 4 2 0 1 3 1 0 0 0 0 0 0 21 1 2317.2318 O95864 O95864 85 105 FADS2 Fatty acid desaturase 2 yes yes 4 1.9667E-06 40.381 By MS/MS By matching 1 1 0.68493 0.69742 51.252 2 Median 0.44547 0.4854 NaN 1 0 Median 1.0531 1.002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12436000 7756600 4679500 9221700 6241800 2979900 3214400 1514700 1699600 0 0 0 0 0 0 0 0 0 0 0 0 9363 1800 9732 46534;46535 46464 46464 1 FLLDHQGELFPSPDPSGL AITLKAINPINTFTKFLLDHQGELFPSPDP DHQGELFPSPDPSGL_______________ K F L G L - 0 0 0 2 0 1 1 2 1 0 4 0 0 2 3 2 0 0 0 0 0 0 18 0 1967.9629 Q07960 Q07960 422 439 ARHGAP1 Rho GTPase-activating protein 1 yes yes 2 0.01208 40.577 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1691100 0 0 1691100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9364 2734 9733 46536 46465 46465 1 FLLDTNK QPNICRNPVCANRRRFLLDTNKSRFVDFQK PVCANRRRFLLDTNKSRFVDFQKVRIQETQ R F L N K S 0 0 1 1 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 849.45962 Q14566 Q14566 191 197 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0076099 88.643 By MS/MS By MS/MS By MS/MS 1 1 1 1.2111 1.0381 8.2426 3 Plateau 0.94936 0.91874 NaN 1 0 Median 1.2284 1.0749 NaN 1 0 Median 0.94863 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42231000 19664000 22567000 11329000 5725800 5603600 22402000 9463100 12938000 8500100 4475300 4024900 0 0 0 0 0 0 0 0 0 9365 2881 9734 46537;46538;46539 46466;46467;46468 46466 3 FLLEAGADQEHK ALTLACYKGHLEMVRFLLEAGADQEHKTDE MVRFLLEAGADQEHKTDEMHTALMEACMDG R F L H K T 2 0 0 1 0 1 2 1 1 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1356.6674 H0YM23;O75179;A0A1W2PQ15;Q8IWZ3;E9PDP5 H0YM23 304 315 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.046958 44.203 By MS/MS 1 0.67545 0.58999 NaN 1 Median NaN NaN NaN 0 0 Median 0.67545 0.58999 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1162700 798410 364280 0 0 0 1162700 798410 364280 0 0 0 0 0 0 0 0 0 0 0 0 9366 1197;3329 9735 46540 46469 46469 1 FLLEGQVFR VDFPEGIDRYKHFARFLLEGQVFRKLASYR YKHFARFLLEGQVFRKLASYRSCLLSSPGT R F L F R K 0 1 0 0 0 1 1 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1107.6077 Q8IY37;F5H3Y4 Q8IY37 1067 1075 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 2 0.014496 44.447 By matching By MS/MS By matching 1 1 1 1.1552 1.1262 10.068 3 Plateau NaN NaN NaN 0 0 Median 1.1552 1.0206 NaN 1 0 Median 0.94932 1.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.178 1.2238 NaN 1 0 Median NaN NaN NaN 0 0 Median 6113900 3047200 3066700 0 0 0 517320 256330 261000 1988000 1029800 958210 0 0 0 3608600 1761100 1847500 0 0 0 9367 3336 9736 46541;46542;46543 46470;46471 46470 2 FLLELQISNNR AACCSHFSSVLAQNRFLLELQISNNRLEDA AQNRFLLELQISNNRLEDAGVRELCQGLGQ R F L N R L 0 1 2 0 0 1 1 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 11 0 1345.7354 P13489;H0YCR7 P13489 342 352 RNH1 Ribonuclease inhibitor yes no 2 0.00017515 107.15 By MS/MS 1 1.0621 0.92169 NaN 1 Median NaN NaN NaN 0 0 Median 1.0621 0.92169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4398300 1860200 2538000 0 0 0 4398300 1860200 2538000 0 0 0 0 0 0 0 0 0 0 0 0 9368 1991 9737 46544 46472;46473;46474 46473 3 FLLESFNNDR DYIQGLLDLKSRFDRFLLESFNNDRLFKQT SRFDRFLLESFNNDRLFKQTIAGDFEYFLN R F L D R L 0 1 2 1 0 0 1 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1253.6041 Q13618 Q13618 355 364 CUL3 Cullin-3 yes yes 2 0.0022391 60.973 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0986 1.0098 26.191 5 Median 0.95414 0.90271 NaN 1 0 Median 0.99511 0.86038 NaN 1 0 Median 1.0986 1.1691 NaN 1 0 Median 1.1719 1.0098 NaN 1 0 Median 1.556 1.6506 NaN 1 1 Median NaN NaN NaN 0 0 Median 41424000 19087000 22337000 12724000 6070600 6653000 16490000 7661800 8827800 7215000 3341100 3873900 2583500 1118800 1464600 2412100 894250 1517800 0 0 0 9369 2831 9738 46545;46546;46547;46548;46549 46475;46476;46477;46478;46479;46480;46481;46482 46477 8 FLLEYIAPMTEK DIHMNQIGFEREWHKFLLEYIAPMTEKLYP WHKFLLEYIAPMTEKLYPGYYTRAQFDLAF K F L E K L 1 0 0 0 0 0 2 0 0 1 2 1 1 1 1 0 1 0 1 0 0 0 12 0 1453.7527 Q02809 Q02809 615 626 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.0026723 48.091 By MS/MS By matching By matching 1 1 1 1.1211 0.98112 26.915 3 Median 1.0063 0.96431 NaN 1 0 Median 1.1211 0.98112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5073 1.55 NaN 1 0 Median NaN NaN NaN 0 0 Median 8329000 3848800 4480200 3715200 1695900 2019300 4158100 2016300 2141700 0 0 0 0 0 0 455750 136640 319110 0 0 0 9370 2702 9739 46550;46551;46552 46483;46484 46484 2 FLLGSWLEQAR ELLPALDEVLASDSRFLLGSWLEQARAAAV SDSRFLLGSWLEQARAAAVSEAEADFYEQN R F L A R A 1 1 0 0 0 1 1 1 0 0 3 0 0 1 0 1 0 1 0 0 0 0 11 0 1318.7034 P54802 P54802 616 626 NAGLU Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form yes yes 2 0.001697 57.598 By MS/MS By MS/MS 1 1 1.7447 1.6568 1.9789 2 Median 1.6459 1.6338 NaN 1 0 Median 1.8494 1.6801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2120900 800900 1320000 1312100 485440 826670 808780 315460 493330 0 0 0 0 0 0 0 0 0 0 0 0 9371 2487 9740 46553;46554 46485;46486;46487 46486 3 FLLGYQPR FIPYFICACKELPGKFLLGYQPRGKPRIEY CKELPGKFLLGYQPRGKPRIEYVTVTPEGF K F L P R G 0 1 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 8 0 992.54435 Q7KZ85 Q7KZ85 1472 1479 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0047196 79.939 By MS/MS By MS/MS 1 1 0.84591 0.90669 9.0553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88231 0.96665 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81101 0.85046 NaN 1 0 Median NaN NaN NaN 0 0 Median 12056000 6391700 5664000 0 0 0 0 0 0 7877600 4017300 3860300 0 0 0 4178100 2374400 1803700 0 0 0 9372 3213 9741 46555;46556 46488;46489;46490 46488 3 FLLHEPIVNK GSTAARTFYLIKDIRFLLHEPIVNKFREYK IKDIRFLLHEPIVNKFREYKVFVRKLRKAY R F L N K F 0 0 1 0 0 0 1 0 1 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1208.6917 B5MCF9;O00541 B5MCF9 72 81 PES1 Pescadillo homolog yes no 2;3 0.00036621 66.299 By MS/MS By matching By MS/MS 2 1 1 1.0439 0.97701 13.929 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87567 0.90022 10.594 2 0 Median 1.1453 0.98382 NaN 1 0 Median 1.1538 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median 37010000 18783000 18227000 0 0 0 0 0 0 16531000 9230000 7301000 501690 265160 236520 19977000 9287400 10690000 0 0 0 9373 618 9742 46557;46558;46559;46560 46491;46492;46493;46494;46495 46491 5 FLLHQETLPEQLLAEK DMLQEKIEEMAEQERFLLHQETLPEQLLAE LLHQETLPEQLLAEKQLNLSAMPVLTAPQL R F L E K Q 1 0 0 0 0 2 3 0 1 0 5 1 0 1 1 0 1 0 0 0 0 0 16 0 1908.0357 Q8WUM0 Q8WUM0 1001 1016 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 0.00010219 70.942 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 2 2 2 1 1 0.96014 0.96811 54.728 11 Median 0.69274 0.69561 16.307 3 1 Median 1.1962 1.0656 9.103 2 0 Median 0.93335 0.99346 4.2441 2 0 Median 1.1566 0.98968 3.1166 2 0 Median 1.4273 1.4717 NaN 1 1 Median 0.20666 0.18409 NaN 1 0 Median 98960000 49509000 49451000 8467800 4938200 3529500 2877700 1294300 1583400 71041000 35803000 35238000 10638000 4921700 5716300 5556100 2235500 3320500 379370 316540 62833 9374 3492 9743 46561;46562;46563;46564;46565;46566;46567;46568;46569;46570;46571 46496;46497;46498;46499;46500;46501 46499 6 FLLLQGLVEK IYLPVIGQSPVVDKKFLLLQGLVEKEIDYQ VVDKKFLLLQGLVEKEIDYQRELLETLGMM K F L E K E 0 0 0 0 0 1 1 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 10 0 1158.7012 Q8TED0;H0Y8P4 Q8TED0 463 472 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.00037046 81.548 By MS/MS By MS/MS 1 3 1.6692 1.3837 45.536 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9987 1.7152 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.394 1.1162 54.42 3 0 Median 22842000 9724600 13118000 0 0 0 0 0 0 0 0 0 3325400 887120 2438300 0 0 0 19517000 8837400 10680000 9375 1163 9744 46572;46573;46574;46575 46502;46503;46504 46504 3 FLLQDTVELR MCSLMLSKELPARIRFLLQDTVELREHHWV PARIRFLLQDTVELREHHWVPRKAFLDNGP R F L L R E 0 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 1 0 0 1 0 0 10 0 1232.6765 P78344;D3DQV9;H0Y3P2;H0YCH5 P78344 296 305 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0057065 50.04 By MS/MS 1 0.87041 0.75042 NaN 1 Median NaN NaN NaN 0 0 Median 0.87041 0.75042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1592200 627710 964450 0 0 0 1592200 627710 964450 0 0 0 0 0 0 0 0 0 0 0 0 9376 2639 9745 46576 46505 46505 1 FLLQQHLISAR RILKRSFSSIVEVARFLLQQHLISARSAHA EVARFLLQQHLISARSAHAHVLKAMGLAEE R F L A R S 1 1 0 0 0 2 0 0 1 1 3 0 0 1 0 1 0 0 0 0 0 0 11 0 1324.7616 P48382;F8W689;H0Y4B4 P48382 229 239 RFX5 DNA-binding protein RFX5 yes no 3 0.0007 52.693 By MS/MS 1 0.97289 0.993 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97289 0.993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9275900 4695400 4580400 0 0 0 0 0 0 9275900 4695400 4580400 0 0 0 0 0 0 0 0 0 9377 2360 9746 46577 46506 46506 1 FLLSDQSLLLLPEYHQR LRERMQIQKEMERLRFLLSDQSLLLLPEYH LSDQSLLLLPEYHQRVEVLRTLGYVDEAGT R F L Q R V 0 1 0 1 0 2 1 0 1 0 6 0 0 1 1 2 0 0 1 0 0 0 17 0 2071.1102 Q15477;H7C4L3 Q15477 1042 1058 SKIV2L Helicase SKI2W yes no 3 0.00082693 34.277 By MS/MS By matching By matching By matching 1 1 1 1 1.01 0.92989 20.23 4 Median 0.92342 0.92555 NaN 1 0 Median 1.1048 0.93425 NaN 1 0 Median 1.2723 1.3604 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84818 0.87557 NaN 1 0 Median NaN NaN NaN 0 0 Median 6697300 3042300 3655000 1336900 673490 663370 4476400 1983000 2493400 559950 258640 301310 0 0 0 324080 127140 196940 0 0 0 9378 2955 9747 46578;46579;46580;46581 46507;46508 46508 2 FLLSESGSGK FHKTLRRLVPDSDVRFLLSESGSGKGAAMV DSDVRFLLSESGSGKGAAMVTAVAYRLAEQ R F L G K G 0 0 0 0 0 0 1 2 0 0 2 1 0 1 0 3 0 0 0 0 0 0 10 0 1023.5237 P19367 P19367 442 451 HK1 Hexokinase-1 yes yes 2 8.7128E-05 124.23 By MS/MS By MS/MS By MS/MS 1 1 1 1.3857 1.2107 38.083 3 Median 1.0958 1.0604 NaN 1 1 Median 1.3857 1.2107 NaN 1 0 Median 1.9646 2.1694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22695000 9539300 13156000 11477000 5282400 6194700 6423700 2767800 3655900 4794500 1489100 3305300 0 0 0 0 0 0 0 0 0 9379 2064 9748 46582;46583;46584 46509;46510;46511;46512 46509 4 FLLSLPEHR EGLPKNPDLRIAQLRFLLSLPEHRGDAAVR RIAQLRFLLSLPEHRGDAAVRDELMAAVRD R F L H R G 0 1 0 0 0 0 1 0 1 0 3 0 0 1 1 1 0 0 0 0 0 0 9 0 1110.6186 Q15008;C9J7B7 Q15008 24 32 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.0021293 74.127 By MS/MS By matching 1 1 1.0471 0.9747 17.725 2 Median 1.1029 1.1048 NaN 1 0 Median 0.9941 0.85988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37427000 18455000 18972000 33974000 16799000 17175000 3452700 1655400 1797400 0 0 0 0 0 0 0 0 0 0 0 0 9380 2911 9749 46585;46586 46513;46514 46514 2 FLLVGQTMPTLLDEDLTK ETRQGVYSICLQLARFLLVGQTMPTLLDED VGQTMPTLLDEDLTKDGIEALSSRPFRNVS R F L T K D 0 0 0 2 0 1 1 1 0 0 5 1 1 1 1 0 3 0 0 1 0 0 18 0 2033.0755 Q9UPU5 Q9UPU5 1245 1262 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 0.0026652 32.498 By MS/MS By matching 2 1 0.99607 0.88706 11.603 3 Median 0.93084 0.90426 16.334 2 0 Median 0.99607 0.88706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1456900 692390 764490 1068400 508080 560350 388450 184310 204140 0 0 0 0 0 0 0 0 0 0 0 0 9381 4357 9750 46587;46588;46589 46515 46515 1 FLLYDQTK TSTDQVPIQHELFERFLLYDQTKAPPFVAR QHELFERFLLYDQTKAPPFVARETLRAWQE R F L T K A 0 0 0 1 0 1 0 0 0 0 2 1 0 1 0 0 1 0 1 0 0 0 8 0 1026.5386 Q9Y2S7;B4DEM9 Q9Y2S7 200 207 POLDIP2 Polymerase delta-interacting protein 2 yes no 2 0.0040012 84.097 By MS/MS By matching By matching 1 1 1 1.1234 1.0741 16.302 3 Median 1.2037 1.1162 NaN 1 0 Median 0.9642 0.82726 NaN 1 0 Median 1.1234 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18850000 7610000 11240000 11735000 4370600 7364000 4017200 1713200 2304000 3097700 1526200 1571500 0 0 0 0 0 0 0 0 0 9382 4390 9751 46590;46591;46592 46516 46516 1 FLMANGQLVK SMGRGRDWNVDLIPKFLMANGQLVKMLLYT DLIPKFLMANGQLVKMLLYTEVTRYLDFKV K F L V K M 1 0 1 0 0 1 0 1 0 0 2 1 1 1 0 0 0 0 0 1 0 0 10 0 1119.6111 P31150;G5E9U5;P50395;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395 80 89 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2 0.00051883 91.9 By MS/MS By MS/MS By MS/MS 1 1 2 1.3267 1.2356 16.253 4 Median 1.0657 0.98253 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3457 1.3 NaN 1 0 Median 1.4659 1.2997 14.327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47492000 22255000 25237000 26650000 12861000 13789000 0 0 0 12848000 5873300 6974600 7993500 3520500 4472900 0 0 0 0 0 0 9383 2411;2201 9752 46593;46594;46595;46596 46517;46518;46519;46520 46519 4 FLMGTNSPDSR GNGQATSMVQLQGGRFLMGTNSPDSRDGDG QGGRFLMGTNSPDSRDGDGPVREATVKPFA R F L S R D 0 1 1 1 0 0 0 1 0 0 1 0 1 1 1 2 1 0 0 0 0 0 11 0 1223.5605 J3KQJ1;Q8NBJ7;E9PBT8;C9JL30;A8MXB9;A0A494C1B1;C9J660;J3QT17;H7C3B2;F8WA42;F8WEX5;E9PG02;F8WEV7;F8WES7 J3KQJ1 57 67 SUMF2 Sulfatase-modifying factor 2 yes no 2 0.00012526 138.98 By MS/MS By MS/MS By MS/MS 1 1 1 1.4032 1.1689 23.202 3 Median 0.85877 0.80385 NaN 1 0 Median 1.4032 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4729 1.2291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24150000 11353000 12798000 16823000 8316000 8507400 5481100 2327200 3153900 0 0 0 1845800 709310 1136400 0 0 0 0 0 0 9384 1319 9753 46597;46598;46599 46521;46522;46523;46524;46525 46522 5 FLMSLVNQVPK DVLSGKVSADNTVGRFLMSLVNQVPKIVPD TVGRFLMSLVNQVPKIVPDDFETMLNSNIN R F L P K I 0 0 1 0 0 1 0 0 0 0 2 1 1 1 1 1 0 0 0 2 0 0 11 0 1274.7057 O00303;H0YDT6 O00303 307 317 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.025094 33.263 By matching By MS/MS By matching By matching 1 1 1 3 1.1058 0.95472 69.612 6 Median 1.0253 0.94618 NaN 1 0 Median 1.0262 0.86879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7384 1.6581 NaN 1 0 Median 1.1917 0.96334 89.155 3 0 Median 44889000 19808000 25082000 22675000 10706000 11969000 16969000 7219100 9749900 0 0 0 0 0 0 3592900 1106200 2486700 1652500 776400 876080 9385 1457 9754 46600;46601;46602;46603;46604;46605 46526 46526 1 FLMYGSKPQIAEIIR VELSKAKYSRNIVKKFLMYGSKPQIAEIIR FLMYGSKPQIAEIIRSFKGHVRKMLRHAEA K F L I R S 1 1 0 0 0 1 1 1 0 3 1 1 1 1 1 1 0 0 1 0 0 0 15 1 1764.9597 Q15397 Q15397 222 236 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.031796 17.917 By matching By MS/MS By matching 1 3 1 0.98423 0.93793 22.269 5 Median NaN NaN NaN 0 0 Median 1.2636 1.2262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82598 0.78154 21.793 3 0 Plateau 1.0608 0.93793 NaN 1 0 Median 17965000 8715500 9249200 0 0 0 1937300 803760 1133500 0 0 0 0 0 0 15754000 7784300 7969600 273550 127430 146120 9386 2947 9755 46606;46607;46608;46609;46610 46527;46528 46527 2 FLNAENAQK DFADECPKPELLAIRFLNAENAQKFKTKFE ELLAIRFLNAENAQKFKTKFEECRKEIEER R F L Q K F 2 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1033.5193 F6WQW2;P43487;C9JXG8;C9JGV6 F6WQW2 219 227 RANBP1 Ran-specific GTPase-activating protein yes no 2 0.00034134 136.16 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 4 1.1192 1.033 44.348 9 Median 1.1192 1.0469 2.11 3 0 Median 1.2041 1.0134 2.7092 2 0 Median 1.1169 1.048 NaN 1 0 Median 1.1172 0.93947 75.764 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131750000 68391000 63358000 35285000 16705000 18580000 13724000 5772500 7951800 59834000 28104000 31730000 22906000 17809000 5096400 0 0 0 0 0 0 9387 1052 9756 46611;46612;46613;46614;46615;46616;46617;46618;46619;46620 46529;46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541 46532 13 FLNALTLNMIR EKKGCTGVITLNRPKFLNALTLNMIRQIYP NRPKFLNALTLNMIRQIYPQLKKWEQDPET K F L I R Q 1 1 2 0 0 0 0 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 11 0 1304.7275 Q6NVY1;B8ZZZ0 Q6NVY1 56 66 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 2 0.0042699 48.283 By matching By MS/MS By matching 1 2 1 1.7696 1.5055 37.53 4 Median 0.75338 0.80702 NaN 1 0 Median 1.7696 1.5055 4.9784 2 0 Median NaN NaN NaN 0 0 Median 2.2938 1.9434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10158000 4260200 5898100 3070900 1568000 1502900 6915000 2646000 4268900 0 0 0 172460 46209 126250 0 0 0 0 0 0 9388 3146 9757 46621;46622;46623;46624 46542;46543 46542 2 FLNDTTKPVGLLLSER CEKNCEKSMVEQLDKFLNDTTKPVGLLLSE LNDTTKPVGLLLSERFINVPPQIALPMYQQ K F L E R F 0 1 1 1 0 0 1 1 0 0 4 1 0 1 1 1 2 0 0 1 0 0 16 1 1801.9938 Q9P287 Q9P287 168 183 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 3 2.1121E-05 77.324 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.93369 0.96551 12.033 6 Median 0.9582 1.0173 10.648 2 0 Median 1.0132 0.92756 8.9303 2 0 Median 0.95097 1.082 NaN 1 0 Median 0.91318 0.80805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73307000 34879000 38428000 20388000 9538600 10850000 43633000 20735000 22898000 8995500 4462100 4533500 289640 143020 146620 0 0 0 0 0 0 9389 4218 9758 46625;46626;46627;46628;46629;46630 46544;46545;46546;46547;46548;46549 46549 6 FLNEMIAPVMR RTLLETLQKAGFSEKFLNEMIAPVMRVNYG FSEKFLNEMIAPVMRVNYGQSTDINAFVGA K F L M R V 1 1 1 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 0 1 0 0 11 0 1319.673 Q9UHG3;F8W8W4;C9JM55;C9K055 Q9UHG3 212 222 PCYOX1 Prenylcysteine oxidase 1 yes no 2 0.00014351 94.302 By MS/MS By MS/MS 3 2 0.89417 0.86034 15.891 5 Median 0.85016 0.82241 11.206 3 1 Median 1.1351 0.9768 14.668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21250000 10586000 10664000 16038000 8302000 7735500 5212300 2284200 2928100 0 0 0 0 0 0 0 0 0 0 0 0 9390 4279 9759 46631;46632;46633;46634;46635 46550;46551;46552;46553;46554 46554 5 FLNLPQHER PENRTLWENLCTIRRFLNLPQHERDVIYEE LCTIRRFLNLPQHERDVIYEEESRHHHSER R F L E R D 0 1 1 0 0 1 1 0 1 0 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1152.604 C9JR56;Q9UPW6 C9JR56 485 493 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 yes no 2 0.064451 42.109 By MS/MS 1 0.89864 0.77074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89864 0.77074 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 818090 496930 321160 0 0 0 0 0 0 0 0 0 818090 496930 321160 0 0 0 0 0 0 9391 719 9760 46636 46555 46555 1 FLNLSSSPSMAVR APQVMSLHVDTLVTKFLNLSSSPSMAVRIA TKFLNLSSSPSMAVRIAALQCMHALTRLPT K F L V R I 1 1 1 0 0 0 0 0 0 0 2 0 1 1 1 4 0 0 0 1 0 0 13 0 1407.718 Q96T76;H0Y746 Q96T76 959 971 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 3.4514E-05 127.4 By MS/MS By matching By matching 1 3 1 0.98046 0.84962 19.612 5 Median 0.85688 0.8266 NaN 1 0 Median 1.224 1.0465 12.599 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80868 0.6609 NaN 1 0 Median 28064000 12904000 15160000 8319300 4323600 3995700 18649000 7942700 10707000 0 0 0 0 0 0 0 0 0 1095100 637400 457740 9392 3742 9761 46637;46638;46639;46640;46641 46556;46557 46556 2 FLNNFDR RRQFHLTDDDLLRYKFLNNFDRDMNRLEER DDDLLRYKFLNNFDRDMNRLEERYGWLAAP K F L D R D 0 1 2 1 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 924.44537 Q04446;E9PGM4 Q04446 579 585 GBE1 1,4-alpha-glucan-branching enzyme yes no 2 0.047302 41.502 By matching By MS/MS By matching 1 1 1 1.1421 1.1277 18.098 3 Median 1.1421 1.1277 NaN 1 0 Median 1.061 0.91965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2565 1.3194 NaN 1 0 Median NaN NaN NaN 0 0 Median 8900200 3936600 4963500 2108000 963880 1144100 4274500 2120000 2154400 0 0 0 0 0 0 2517700 852700 1665000 0 0 0 9393 2711 9762 46642;46643;46644 46558 46558 1 FLNSFASMHR AIIVKPSDIFGREDRFLNSFASMHRFGPIP GREDRFLNSFASMHRFGPIPLGSLGWKTVK R F L H R F 1 1 1 0 0 0 0 0 1 0 1 0 1 2 0 2 0 0 0 0 0 0 10 0 1208.5761 A0A3B3ISG8;Q16795 A0A3B3ISG8 213 222 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2;3 0.00019248 107.21 By MS/MS By matching By matching By matching 3 2 1 1 1.0006 0.93411 21.788 7 Median 1.0006 0.93411 5.5512 3 1 Median 1.0471 0.92033 20.336 2 0 Median 0.78215 0.76024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6801 1.4664 NaN 1 0 Median 51849000 25148000 26701000 44269000 21636000 22633000 5065000 2250100 2815000 1960000 1049200 910790 0 0 0 0 0 0 555150 213000 342150 9394 424 9763;9764 46645;46646;46647;46648;46649;46650;46651 46559;46560;46561 46559 189 3 FLNVPMFR GYIFETKLISTLIYKFLNVPMFRNVSLKCL ISTLIYKFLNVPMFRNVSLKCLTEIAGVSV K F L F R N 0 1 1 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 8 0 1022.5372 O14980 O14980 254 261 XPO1 Exportin-1 yes yes 2 0.0035609 88.734 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.2241 1.1114 39.069 6 Median 0.91501 0.88067 NaN 1 0 Median 1.257 1.149 NaN 1 0 Median 1.0002 1.0749 NaN 1 0 Median 1.4876 1.3113 NaN 1 0 Median 2.4618 2.6277 NaN 1 0 Median 1.192 0.98536 NaN 1 0 Median 25106000 13040000 12066000 19849000 10624000 9225000 621130 309820 311310 3078200 1574800 1503500 205390 89131 116260 1163400 370900 792530 189550 72124 117430 9395 1510 9765 46652;46653;46654;46655;46656;46657 46562;46563;46564;46565 46563 4 FLNYVQSQHQR QLLDVAGGTGDIAFRFLNYVQSQHQRKQKR IAFRFLNYVQSQHQRKQKRQLRAQQNLSWE R F L Q R K 0 1 1 0 0 3 0 0 1 0 1 0 0 1 0 1 0 0 1 1 0 0 11 0 1418.7055 F8VVX6;Q5HYK3;F8VP53;F8VVW7 F8VVX6 43 53 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial yes no 2;3 4.2099E-05 130.75 By MS/MS By MS/MS 2 2 0.85741 0.75751 6.8762 4 Median 0.79161 0.74832 6.5131 2 0 Median 0.93491 0.7806 9.0327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20848000 11611000 9237500 12863000 7378200 5484700 7985400 4232600 3752800 0 0 0 0 0 0 0 0 0 0 0 0 9396 1068 9766 46658;46659;46660;46661 46566;46567;46568;46569;46570;46571;46572 46566 7 FLPAVSDENSK RKARKQKGAETELVRFLPAVSDENSKRLSS ELVRFLPAVSDENSKRLSSRARKRAAKRRL R F L S K R 1 0 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1205.5928 P46087;F5GWB7;F5H709;F5H5X6;F5H359;F5H8G6 P46087 31 41 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.013525 68.657 By MS/MS 2 0.93912 0.9689 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93912 0.9689 NaN 1 0 Median NaN NaN NaN 0 0 Median 5352700 3334000 2018700 0 0 0 0 0 0 0 0 0 0 0 0 5352700 3334000 2018700 0 0 0 9397 2338 9767 46662;46663 46573;46574 46573 1 FLPAVSDENSKR RKARKQKGAETELVRFLPAVSDENSKRLSS LVRFLPAVSDENSKRLSSRARKRAAKRRLG R F L K R L 1 1 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 12 1 1361.6939 P46087;F5GWB7;F5H709;F5H5X6;F5H359;F5H8G6 P46087 31 42 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2;3 6.2924E-10 179.51 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 7 4 0.9183 1.0124 19.316 13 Median NaN NaN NaN 0 0 Median 0.9183 0.86822 NaN 1 0 Median 1.0886 1.2367 NaN 1 0 Median 1.2115 1.2949 NaN 1 0 Median 0.9033 1.0077 14.709 6 0 Median 1.0157 0.90206 24.549 4 0 Median 67294000 31826000 35469000 0 0 0 2533300 1330100 1203200 3479500 1541200 1938300 767410 361410 406000 49599000 24476000 25123000 10915000 4117400 6797600 9398 2338 9768 46664;46665;46666;46667;46668;46669;46670;46671;46672;46673;46674;46675;46676;46677 46575;46576;46577;46578;46579;46580;46581;46582;46583;46584;46585;46586;46587 46582 13 FLPDEAR ______________________________ RRNPEPLRFLPDEARSLPPPKLTDPRLLYI R F L A R S 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 846.42357 O95298;E9PM14;A0A087WUM3;E9PQ53;E9PRJ5;E9PRQ4;A0A087WY27 O95298 12 18 NDUFC2;KCTD14;NDUFC2-KCTD14 NADH dehydrogenase [ubiquinone] 1 subunit C2;NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2 yes no 2 0.024489 55.441 By MS/MS By MS/MS By MS/MS 1 1 1 0.92244 0.89785 19.448 3 Median 0.92244 0.89785 NaN 1 0 Median 1.25 1.0607 NaN 1 0 Median 0.71056 0.71981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16574000 8479900 8094300 7084100 3953300 3130900 5991700 2540900 3450800 3498400 1985800 1512600 0 0 0 0 0 0 0 0 0 9399 1762 9769 46678;46679;46680 46588;46589;46590;46591 46588 4 FLPEEEKLTEQER YMKEVGSPPLDPTERFLPEEEKLTEQERSK ERFLPEEEKLTEQERSKRFEKVYTHNLYYL R F L E R S 0 1 0 0 0 1 5 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 13 1 1646.8152 A0A1B0GUA3;Q96EK5;A0A1B0GUH6;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GV79;A0A1B0GW21 A0A1B0GUA3 212 224 KIAA1279;KIF1BP KIF1-binding protein yes no 3 1.2903E-05 90.412 By MS/MS By MS/MS 1 1 1.1262 1.0903 14.603 2 Median 0.9565 0.98329 NaN 1 0 Median 1.326 1.2088 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29781000 13735000 16046000 19328000 9598900 9729000 10453000 4136000 6317200 0 0 0 0 0 0 0 0 0 0 0 0 9400 323 9770 46681;46682 46592;46593;46594 46593 3 FLPEILALQR LWHFLQKEAELRLVKFLPEILALQRDLVKQ LRLVKFLPEILALQRDLVKQFQNVQQVEYS K F L Q R D 1 1 0 0 0 1 1 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 10 0 1198.7074 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4832 4841 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.00035707 83.265 By MS/MS By MS/MS By matching 1 1 1 0.79779 0.85858 15.172 3 Median 0.79779 0.79489 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76674 0.85858 NaN 1 0 Median 1.2289 1.0652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7034200 3902400 3131800 6225700 3481500 2744200 0 0 0 750980 396270 354710 57514 24609 32905 0 0 0 0 0 0 9401 189 9771 46683;46684;46685 46595;46596 46595 2 FLPGMAIGYSSSK VQCEIDEDVIQVSKKFLPGMAIGYSSSKLT KKFLPGMAIGYSSSKLTLHVGDGFEFMKQN K F L S K L 1 0 0 0 0 0 0 2 0 1 1 1 1 1 1 3 0 0 1 0 0 0 13 0 1356.6748 P19623;K7EQ47 P19623 136 148 SRM Spermidine synthase yes no 2 0.025645 45.661 By MS/MS 1 1.5172 1.3747 NaN 1 Median 1.5172 1.3747 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51743000 22384000 29359000 51743000 22384000 29359000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9402 2068 9772 46686 46597 46597 1 FLPGYVGGIQEGAVTPAGVVNK FQVLLYTSLPDFCHKFLPGYVGGIQEGAVT GIQEGAVTPAGVVNKYQINGLQAWLLTHLL K F L N K Y 2 0 1 0 0 1 1 5 0 1 1 1 0 1 2 0 1 0 1 4 0 0 22 0 2172.1579 Q9UBM7;E9PM00;E9PJ54 Q9UBM7 121 142 DHCR7 7-dehydrocholesterol reductase yes no 2;3 1.494E-17 100.54 By MS/MS By matching By matching 3 3 2 0.87364 0.79566 23.774 8 Median 0.69675 0.69622 0.81961 3 0 Median 0.93393 0.82072 7.9227 3 0 Median 1.0378 1.1584 25.99 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60792000 35858000 24934000 46358000 28966000 17392000 11568000 5688600 5879500 2866000 1203500 1662600 0 0 0 0 0 0 0 0 0 9403 4241 9773 46687;46688;46689;46690;46691;46692;46693;46694 46598;46599;46600;46601;46602 46599 5 FLPLFDR ______________________________ MAGQAFRKFLPLFDRVLVERSAAETVTKGG K F L D R V 0 1 0 1 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 7 0 906.49634 S4R3N1;P61604;B8ZZL8 P61604 9 15 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2 0.0081656 86.512 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.1141 1.0379 8.9145 6 Median 1.0213 0.98266 NaN 1 0 Median 1.3236 1.1298 NaN 1 0 Median 1.097 1.1086 NaN 1 0 Median 1.1315 0.89316 NaN 1 0 Median 0.93417 0.99759 NaN 1 0 Median 1.3768 1.0798 NaN 1 0 Median 383120000 178820000 204290000 311730000 147500000 164230000 40194000 16822000 23372000 29589000 13693000 15896000 856700 457590 399110 578530 272990 305540 165710 78779 86929 9404 2560;4561 9774 46695;46696;46697;46698;46699;46700 46603;46604;46605;46606;46607;46608;46609 46606 7 FLPLNIR QPRPSANRENFSPERFLPLNIRNSPFTRGR RENFSPERFLPLNIRNSPFTRGRREDYVGG R F L I R N 0 1 1 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 871.52797 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 865 871 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 0.01617 69.39 By matching By MS/MS By matching 1 3 1 1.0404 1.0201 38.341 5 Median NaN NaN NaN 0 0 Median 1.0332 0.86093 NaN 1 0 Median 1.0404 1.0326 45.83 3 0 Median 1.2042 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11174000 4897200 6276800 0 0 0 5279000 2502700 2776400 5577800 2240700 3337100 317160 153870 163300 0 0 0 0 0 0 9405 3251 9775 46701;46702;46703;46704;46705 46610 46610 1 FLPMFLSDNPNPK TPEGKQRPQGGDFMRFLPMFLSDNPNPKCG MRFLPMFLSDNPNPKCGKGGHAAYSSAVNI R F L P K C 0 0 2 1 0 0 0 0 0 0 2 1 1 2 3 1 0 0 0 0 0 0 13 0 1518.7541 O15118;K7EQ23 O15118 998 1010 NPC1 Niemann-Pick C1 protein yes no 2 0.012844 34.721 By MS/MS By matching By matching 1 2 1 0.76396 0.74798 17.156 4 Median 0.60937 0.58648 NaN 1 0 Median 0.92635 0.808 13.471 2 0 Median 0.69295 0.76161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7194500 4076600 3117800 3290800 1999000 1291800 3356600 1831400 1525200 547070 246240 300830 0 0 0 0 0 0 0 0 0 9406 1520 9776 46706;46707;46708;46709 46611 46611 1 FLPPVLLK GHAETDEQLQNIISKFLPPVLLKLSSTQEG LQNIISKFLPPVLLKLSSTQEGVRKKVMEL K F L L K L 0 0 0 0 0 0 0 0 0 0 3 1 0 1 2 0 0 0 0 1 0 0 8 0 925.60008 Q5VYK3;J3KN16;R4GMY1;R4GMY3 Q5VYK3 39 46 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.026977 41.502 By MS/MS By matching 2 2 0.8822 0.80802 11.036 4 Median 0.82317 0.78396 4.0154 2 0 Median 0.99233 0.8912 13.598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8805500 4285400 4520100 5545000 2599800 2945200 3260500 1685600 1574900 0 0 0 0 0 0 0 0 0 0 0 0 9407 3116 9777 46710;46711;46712;46713 46612;46613 46612 2 FLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG LLPLQRFLPRPPGEKGPPRGGGRGGRGGGR R F L E K G 0 1 0 0 0 0 1 1 0 0 1 1 0 1 3 0 0 0 0 0 0 0 9 1 1039.5815 Q9NY12 Q9NY12 157 165 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.0029326 109.11 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74142 0.71894 10.507 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59855 0.62996 NaN 1 0 Median 0.83822 0.742 NaN 1 0 Median 0.6558 0.69659 NaN 1 0 Median 0.91417 0.8083 NaN 1 0 Median 65432000 37422000 28010000 0 0 0 0 0 0 22582000 13813000 8768300 3131400 1552700 1578600 35090000 19711000 15379000 4629000 2345100 2283900 9408 4171 9778 46714;46715;46716;46717 46614;46615;46616;46617;46618 46615 5 FLPRPVFTK DKGLEKISAYMKSSRFLPRPVFTKMAVWGN YMKSSRFLPRPVFTKMAVWGNK________ R F L T K M 0 1 0 0 0 0 0 0 0 0 1 1 0 2 2 0 1 0 0 1 0 0 9 1 1103.6492 E9PHN7;P28161;A0A0A0MR85 E9PHN7 166 174 GSTM2;GSTM4 Glutathione S-transferase Mu 2 yes no 2 0.0046042 87.639 By MS/MS By MS/MS 1 1 0.75262 0.73983 24.045 2 Median 0.5986 0.62415 NaN 1 0 Median 0.94627 0.87694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27346000 16061000 11286000 20808000 12732000 8075400 6538600 3328300 3210300 0 0 0 0 0 0 0 0 0 0 0 0 9409 935 9779 46718;46719 46619;46620;46621 46619 3 FLPSELRDEH EARKKLAQIRQQQYKFLPSELRDEH_____ QQQYKFLPSELRDEH_______________ K F L E H - 0 1 0 1 0 0 2 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 10 1 1241.6041 Q9Y490 Q9Y490 2532 2541 TLN1 Talin-1 yes yes 2;3 0.00011535 118.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 5 2 1 1 1.0076 0.85935 27.538 11 Median 0.81154 0.76171 17.684 3 0 Median 1.1006 0.91241 8.5631 4 0 Median 0.63986 0.69756 73.024 2 1 Median 0.97837 0.85935 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85166 0.6962 NaN 1 0 Median 128030000 66831000 61197000 37407000 19881000 17526000 53849000 24741000 29108000 33943000 20886000 13057000 2440000 1140600 1299400 0 0 0 390310 183140 207180 9410 4441 9780 46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731 46622;46623;46624;46625;46626;46627;46628;46629;46630;46631;46632;46633;46634;46635;46636;46637 46629 16 FLPSVFMDAMR ADKLIGPKVRITLMKFLPSVFMDAMRDNPE TLMKFLPSVFMDAMRDNPEAAVHIFEGTHE K F L M R D 1 1 0 1 0 0 0 0 0 0 1 0 2 2 1 1 0 0 0 1 0 0 11 0 1312.6308 O75165 O75165 1899 1909 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.0020633 55.567 By MS/MS 1 0.93779 0.92614 NaN 1 Median 0.93779 0.92614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2877600 1418600 1459000 2877600 1418600 1459000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9411 1653 9781 46732 46638;46639 46639 2 FLPSYQAVEYMR AGAAAATGNGDILMRFLPSYQAVEYMRRGE LMRFLPSYQAVEYMRRGEDPTIACQKVISR R F L M R R 1 1 0 0 0 1 1 0 0 0 1 0 1 1 1 1 0 0 2 1 0 0 12 0 1502.7228 H0Y9C7;P20933 H0Y9C7 123 134 AGA N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase;Glycosylasparaginase alpha chain;Glycosylasparaginase beta chain yes no 2 2.5339E-05 96.89 By MS/MS By MS/MS 2 2 1.204 1.0764 17.639 4 Median 0.96008 0.92658 10.811 2 0 Median 1.4676 1.2209 7.4471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38919000 18370000 20549000 35099000 16967000 18132000 3819800 1403200 2416600 0 0 0 0 0 0 0 0 0 0 0 0 9412 1167 9782;9783 46733;46734;46735;46736 46640;46641;46642;46643 46641 390 4 FLQALADGSSR TSQQWRLKVLVRLSKFLQALADGSSRLRES RLSKFLQALADGSSRLRESEGLQEQKENPH K F L S R L 2 1 0 1 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 11 0 1163.5935 Q9NXF1 Q9NXF1 234 244 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.00019688 105.52 By MS/MS By matching 1 1 1.3916 1.3306 22.256 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0699 1.1369 NaN 1 0 Median 1.81 1.5574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9992800 4497800 5495000 0 0 0 0 0 0 8886500 4024100 4862400 1106300 473690 632650 0 0 0 0 0 0 9413 4163 9784 46737;46738 46644;46645 46645 2 FLQDCQELSLWINEK SELLMRLKDNRDLQKFLQDCQELSLWINEK FLQDCQELSLWINEKMLTAQDMSYDEARNL K F L E K M 0 0 1 1 1 2 2 0 0 1 3 1 0 1 0 1 0 1 0 0 0 0 15 0 1921.9244 Q01082;A0A087WUZ3 Q01082 1280 1294 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.045984 23.605 By MS/MS 3 1.1392 1.1374 25.893 3 Plateau 1.1392 1.1374 25.893 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15706000 7858800 7847500 15706000 7858800 7847500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9414 2681 9785 46739;46740;46741 46646 46646 1 FLQDHKEFESWLER AELKQVQTLQDELQKFLQDHKEFESWLERS KFLQDHKEFESWLERSEKELENMHKGGSSP K F L E R S 0 1 0 1 0 1 3 0 1 0 2 1 0 2 0 1 0 1 0 0 0 0 14 1 1862.8951 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3882 3895 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00068871 44.601 By MS/MS 1 1.012 1.0444 NaN 1 Median 1.012 1.0444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6358800 3317100 3041600 6358800 3317100 3041600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9415 1220 9786 46742 46647 46647 1 FLQDTIEEMALK ERLKKELRVKLELAKFLQDTIEEMALKNKA LAKFLQDTIEEMALKNKAAKGSATKDFSVF K F L L K N 1 0 0 1 0 1 2 0 0 1 2 1 1 1 0 0 1 0 0 0 0 0 12 0 1436.7221 O95202 O95202 263 274 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 6.3504E-06 98.249 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.355 1.1933 9.638 5 Median 1.1661 1.0469 NaN 1 0 Median 1.3604 1.1886 0.56156 2 2 Median 1.1533 1.2254 NaN 1 0 Median 1.573 1.3716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37362000 15940000 21422000 17391000 7748300 9642700 16807000 6895500 9911900 2627600 1088900 1538700 535740 207340 328400 0 0 0 0 0 0 9416 1754 9787 46743;46744;46745;46746;46747 46648;46649;46650;46651;46652 46649 5 FLQDYFDGNLK VMQEEFSRDGKALERFLQDYFDGNLKRYLK ALERFLQDYFDGNLKRYLKSEPIPESNDGP R F L L K R 0 0 1 2 0 1 0 1 0 0 2 1 0 2 0 0 0 0 1 0 0 0 11 0 1358.6507 P30101 P30101 352 362 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0036623 49.418 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.275 1.1058 14.338 6 Median 1.1392 1.0853 23.321 2 0 Median 1.2292 1.0567 2.5472 2 0 Median 1.4046 1.3645 NaN 1 0 Median 1.3232 1.1365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57061000 25810000 31251000 10901000 4690500 6210800 31658000 14281000 17376000 12198000 5792300 6406100 2303700 1045600 1258100 0 0 0 0 0 0 9417 2189 9788 46748;46749;46750;46751;46752;46753 46653;46654;46655;46656 46654 4 FLQDYFDGNLKR VMQEEFSRDGKALERFLQDYFDGNLKRYLK LERFLQDYFDGNLKRYLKSEPIPESNDGPV R F L K R Y 0 1 1 2 0 1 0 1 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 1 1514.7518 P30101 P30101 352 363 PDIA3 Protein disulfide-isomerase A3 yes yes 2;3 4.3797E-15 144.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 4 2 2 2 1.1765 1.1834 14.726 21 Median 1.1189 1.1514 15.816 11 4 Median 1.3085 1.1948 8.7288 4 0 Median 0.96053 1.0754 14.124 2 0 Median 1.4503 1.361 6.3387 2 0 Median 1.2684 1.3165 21.348 2 0 Median NaN NaN NaN 0 0 Median 174190000 79668000 94523000 139330000 64318000 75008000 11048000 4632200 6415700 17310000 8279200 9030800 2692600 1105900 1586700 3814500 1333500 2481000 0 0 0 9418 2189 9789 46754;46755;46756;46757;46758;46759;46760;46761;46762;46763;46764;46765;46766;46767;46768;46769;46770;46771;46772;46773;46774 46657;46658;46659;46660;46661;46662;46663;46664;46665;46666;46667;46668;46669;46670;46671;46672;46673;46674;46675 46665 19 FLQEEAEK ENRALILRDKDNTQRFLQEEAEKMKQVAEE DKDNTQRFLQEEAEKMKQVAEEAARLSVAA R F L E K M 1 0 0 0 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 992.48148 Q15149 Q15149 2402 2409 PLEC Plectin yes yes 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.0906 1.0329 21.876 6 Median 0.71063 0.70317 NaN 1 0 Median 1.2568 1.118 NaN 1 0 Median 0.89871 0.9665 NaN 1 0 Median 1.3904 1.3547 NaN 1 0 Median 1.0546 1.1038 NaN 1 0 Median 1.1279 0.96615 NaN 1 0 Median 42657000 18644000 24013000 1572800 759910 812920 15441000 6598700 8841900 5374900 2725200 2649700 3892100 1584600 2307500 10172000 4229300 5943100 6204500 2746300 3458100 9419 2933 9790 46775;46776;46777;46778;46779;46780 46676;46677;46678;46679;46680;46681;46682;46683;46684;46685;46686;46687;46688 46683 13 FLQEEAEKMK ENRALILRDKDNTQRFLQEEAEKMKQVAEE DNTQRFLQEEAEKMKQVAEEAARLSVAAQE R F L M K Q 1 0 0 0 0 1 3 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 10 1 1251.6169 Q15149 Q15149 2402 2411 PLEC Plectin yes yes 2 0.038516 46.891 By MS/MS 1 1.0176 1.1088 NaN 1 Median 1.0176 1.1088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9110500 3976000 5134500 9110500 3976000 5134500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9420 2933 9791 46781 46689;46690 46690 2 FLQEFYQDDELGK MALKDYALEKEKVKKFLQEFYQDDELGKKQ KKFLQEFYQDDELGKKQFKYGNQLVRLAHR K F L G K K 0 0 0 2 0 2 2 1 0 0 2 1 0 2 0 0 0 0 1 0 0 0 13 0 1630.7515 P33993 P33993 16 28 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.015667 33.225 By MS/MS By matching 1 1 1.0028 0.92444 21.402 2 Median 0.82512 0.79461 NaN 1 0 Median 1.2189 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5898700 2903300 2995500 3429800 1864500 1565300 2468900 1038700 1430100 0 0 0 0 0 0 0 0 0 0 0 0 9421 2225 9792 46782;46783 46691;46692 46692 2 FLQEFYQDDELGKK MALKDYALEKEKVKKFLQEFYQDDELGKKQ KFLQEFYQDDELGKKQFKYGNQLVRLAHRE K F L K K Q 0 0 0 2 0 2 2 1 0 0 2 2 0 2 0 0 0 0 1 0 0 0 14 1 1758.8465 P33993 P33993 16 29 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 3.1761E-08 107.4 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 0.89856 0.98803 18.971 7 Median 0.8869 0.90881 1.7031 2 0 Median 1.1635 1.1132 1.3719 2 0 Median 0.73962 0.81851 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88249 0.98803 NaN 1 0 Median 1.691 1.4513 NaN 1 0 Median 81501000 43788000 37713000 49871000 26830000 23042000 8740400 3929400 4811000 20023000 11532000 8490600 0 0 0 2628600 1427600 1201000 237720 68526 169190 9422 2225 9793 46784;46785;46786;46787;46788;46789;46790 46693;46694;46695;46696;46697 46695 5 FLQEHGSDSFLAEHK EQLRSEQLPKKDIIKFLQEHGSDSFLAEHK FLQEHGSDSFLAEHKLLGNIKNVAKTANKD K F L H K L 1 0 0 1 0 1 2 1 2 0 2 1 0 2 0 2 0 0 0 0 0 0 15 0 1743.8216 Q00688 Q00688 28 42 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2;3;4 2.3889E-26 194.24 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 5 5 4 1 1 1.0721 0.9709 21.332 20 Median 1.0125 0.92782 4.6361 4 0 Median 1.2472 1.0372 40.08 5 0 Median 0.99751 0.93631 2.4171 5 0 Median 1.2493 1.0438 6.2772 4 0 Median 1.3565 1.3929 NaN 1 0 Median 0.97475 0.81203 NaN 1 0 Median 439210000 206460000 232750000 123880000 59058000 64817000 114260000 49985000 64277000 145050000 71837000 73214000 54804000 24997000 29807000 800550 389950 410600 419210 193970 225250 9423 2677 9794 46791;46792;46793;46794;46795;46796;46797;46798;46799;46800;46801;46802;46803;46804;46805;46806;46807;46808;46809;46810 46698;46699;46700;46701;46702;46703;46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719;46720 46707 23 FLQESNVLYQHNLR VFHNLLGEIDQQYSRFLQESNVLYQHNLRR RFLQESNVLYQHNLRRIKQFLQSRYLEKPM R F L L R R 0 1 2 0 0 2 1 0 1 0 3 0 0 1 0 1 0 0 1 1 0 0 14 0 1759.9006 P40763 P40763 71 84 STAT3 Signal transducer and activator of transcription 3 yes yes 3 8.6543E-05 73.466 By MS/MS By MS/MS 1 1 0.87003 0.78742 7.3692 2 Median 0.87676 0.82954 NaN 1 0 Median 0.86336 0.74744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16743000 8731400 8011200 11849000 5530100 6319100 4893400 3201300 1692100 0 0 0 0 0 0 0 0 0 0 0 0 9424 2289 9795 46811;46812 46721;46722;46723;46724 46721 4 FLQESNVLYQHNLRR VFHNLLGEIDQQYSRFLQESNVLYQHNLRR FLQESNVLYQHNLRRIKQFLQSRYLEKPME R F L R R I 0 2 2 0 0 2 1 0 1 0 3 0 0 1 0 1 0 0 1 1 0 0 15 1 1916.0017 P40763 P40763 71 85 STAT3 Signal transducer and activator of transcription 3 yes yes 3 0.072574 6.1628 By MS/MS 1 1.2719 1.3041 NaN 1 Median 1.2719 1.3041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5600100 2040700 3559400 5600100 2040700 3559400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9425 2289 9796 46813 46725 46725 1 FLQEVDFFQR RTTRGLDPLFGMCEKFLQEVDFFQRYFIAD GMCEKFLQEVDFFQRYFIADLPHLQDSFVD K F L Q R Y 0 1 0 1 0 2 1 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 10 0 1327.6561 Q96HW7 Q96HW7 754 763 INTS4 Integrator complex subunit 4 yes yes 2 0.00079825 71.223 By matching By MS/MS By matching 1 2 1 1.1634 1.0585 18.147 4 Median NaN NaN NaN 0 0 Median 1.0933 0.95908 NaN 1 0 Median 1.0449 1.1425 27.113 2 0 Median 1.3267 1.1682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3476500 1770100 1706300 0 0 0 292370 155600 136770 2969300 1510600 1458700 214770 103890 110870 0 0 0 0 0 0 9426 3671 9797 46814;46815;46816;46817 46726;46727 46726 2 FLQFVTGTSK FWRALRSFDQADRAKFLQFVTGTSKVPLQG ADRAKFLQFVTGTSKVPLQGFAALEGMNGI K F L S K V 0 0 0 0 0 1 0 1 0 0 1 1 0 2 0 1 2 0 0 1 0 0 10 0 1126.6023 Q7Z6Z7;H0Y659 Q7Z6Z7 4296 4305 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 8.3344E-12 147.51 By MS/MS 2 0.7978 0.78491 45.516 2 Median 0.7978 0.78491 45.516 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53755000 30367000 23388000 53755000 30367000 23388000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9427 3253 9798 46818;46819 46728;46729 46728 2 FLQGDSFLNEDLNQLIK FNPPVESSNPKIKGKFLQGDSFLNEDLNQL QGDSFLNEDLNQLIKRYSSEVATESPLDFT K F L I K R 0 0 2 2 0 2 1 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 17 0 1993.0157 Q8WTT2 Q8WTT2 761 777 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.0047968 30.872 By matching By MS/MS 1 1 1.0595 1.0987 2.5998 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0761 1.1191 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0431 1.0787 NaN 1 0 Median NaN NaN NaN 0 0 Median 5692900 2703600 2989300 0 0 0 0 0 0 1164800 568350 596490 0 0 0 4528100 2135200 2392800 0 0 0 9428 3484 9799 46820;46821 46730;46731 46731 2 FLQGDSFLNEDLNQLIKR FNPPVESSNPKIKGKFLQGDSFLNEDLNQL GDSFLNEDLNQLIKRYSSEVATESPLDFTK K F L K R Y 0 1 2 2 0 2 1 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 18 1 2149.1168 Q8WTT2 Q8WTT2 761 778 NOC3L Nucleolar complex protein 3 homolog yes yes 3 0.00049936 34.094 By MS/MS 1 1.1147 1.2304 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1147 1.2304 NaN 1 0 Median NaN NaN NaN 0 0 Median 3200000 1686300 1513700 0 0 0 0 0 0 0 0 0 0 0 0 3200000 1686300 1513700 0 0 0 9429 3484 9800 46822 46732 46732 1 FLQGFMAPK FGECVIALQASVIKKFLQGFMAPKQKRRKL ASVIKKFLQGFMAPKQKRRKLQSEDSAKTE K F L P K Q 1 0 0 0 0 1 0 1 0 0 1 1 1 2 1 0 0 0 0 0 0 0 9 0 1037.5368 Q9UIG0 Q9UIG0 1108 1116 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.010952 47.743 By MS/MS By matching 1 1 0.96803 0.92029 7.9648 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83096 0.86989 NaN 1 0 Median 1.1277 0.9736 NaN 1 0 Median 11863000 5704000 6158700 0 0 0 0 0 0 0 0 0 0 0 0 11528000 5547000 5981000 334800 157020 177770 9430 4290 9801 46823;46824 46733;46734 46733 2 FLQPVQK ATRGPQVQQPPPSNRFLQPVQKIDMNLTDL QQPPPSNRFLQPVQKIDMNLTDLLGELQRD R F L Q K I 0 0 0 0 0 2 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 7 0 858.49634 F5H365;Q15436 F5H365 200 206 SEC23A Protein transport protein Sec23A yes no 2 0.029724 50.12 By matching By MS/MS By matching 1 1 1 0.92643 0.81017 23.539 3 Plateau 0.895 0.87757 NaN 1 0 Median 0.92643 0.81017 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70717 0.5642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7369100 3659200 3709900 2355200 1210700 1144500 4731800 2268700 2463000 0 0 0 282150 179770 102380 0 0 0 0 0 0 9431 1029 9802 46825;46826;46827 46735 46735 1 FLQQALDR ASSSDKANMLQEYSKFLQQALDRTSQNDAY MLQEYSKFLQQALDRTSQNDAYLNSPSLNF K F L D R T 1 1 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 989.52943 Q9UQR1 Q9UQR1 608 615 ZNF148 Zinc finger protein 148 yes yes 2 0.0023142 125.25 By MS/MS By MS/MS 1 1 1.0413 0.99523 9.9366 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87515 0.9277 NaN 1 0 Median 1.2391 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18008000 9235400 8772300 0 0 0 0 0 0 15968000 8184300 7783600 2039800 1051100 988720 0 0 0 0 0 0 9432 4364 9803 46828;46829 46736;46737;46738 46737 3 FLQQEQSVFR RRRMKLRDLMEAAFKFLQQEQSVFRELWDW EAAFKFLQQEQSVFRELWDWSVCVPLLRSH K F L F R E 0 1 0 0 0 3 1 0 0 0 1 0 0 2 0 1 0 0 0 1 0 0 10 0 1280.6513 Q9NU22;Q5T795 Q9NU22 155 164 MDN1 Midasin yes no 2 2.7395E-05 144.12 By MS/MS 1 0.58153 0.60642 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58153 0.60642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50462000 26767000 23695000 0 0 0 0 0 0 50462000 26767000 23695000 0 0 0 0 0 0 0 0 0 9433 4112 9804 46830 46739 46739 1 FLQSSASVQNHEFLLVHHLQR LKLPFTDTEQECLVKFLQSSASVQNHEFLL SVQNHEFLLVHHLQRANYVPALKLNQTLKI K F L Q R A 1 1 1 0 0 3 1 0 3 0 4 0 0 2 0 3 0 0 0 2 0 0 21 0 2489.2928 Q8WYP5 Q8WYP5 941 961 AHCTF1 Protein ELYS yes yes 4;5 2.9971E-09 57.745 By MS/MS 2 1.0245 1.1225 12.74 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0245 1.1225 12.74 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15890000 7276400 8613900 0 0 0 0 0 0 15890000 7276400 8613900 0 0 0 0 0 0 0 0 0 9434 3524 9805 46831;46832 46740;46741;46742 46742 3 FLQVHASSGHK AVKTDNKLLLENRSKFLQVHASSGHKYSLK NRSKFLQVHASSGHKYSLKEALCDPTVASR K F L H K Y 1 0 0 0 0 1 0 1 2 0 1 1 0 1 0 2 0 0 0 1 0 0 11 0 1209.6255 Q9BRX2 Q9BRX2 240 250 PELO Protein pelota homolog yes yes 3 0.020782 24.254 By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1.2585 1.3515 41.987 6 Median 1.1523 1.1222 NaN 1 0 Median 1.1743 1.0027 NaN 1 0 Median 1.2585 1.3589 3.1008 2 0 Median NaN NaN NaN 0 0 Median 3.1513 3.2823 NaN 1 0 Median 1.6743 1.3739 NaN 1 0 Median 3310000 1490100 1819900 295690 139170 156520 1244100 568680 675410 1472500 635260 837280 0 0 0 177930 94829 83103 119780 52197 67587 9435 3805 9806 46833;46834;46835;46836;46837;46838 46743 46743 1 FLQVQPVSR LLQETLYMCVGIMDRFLQVQPVSRKKLQLV VGIMDRFLQVQPVSRKKLQLVGITALLLAS R F L S R K 0 1 0 0 0 2 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 9 0 1072.6029 O95067;H0YMP3;H1UBN3 O95067 197 205 CCNB2;CCNB2V G2/mitotic-specific cyclin-B2 yes no 2 0.0046342 75.696 By MS/MS 1 0.71472 0.61836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71472 0.61836 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5984600 3052900 2931700 0 0 0 0 0 0 0 0 0 5984600 3052900 2931700 0 0 0 0 0 0 9436 1743 9807 46839 46744 46744 1 FLRENPYYDSR ALAKIYIDSNNNPERFLRENPYYDSRVVGK NPERFLRENPYYDSRVVGKYCEKRDPHLAC R F L S R V 0 2 1 1 0 0 1 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 11 1 1458.6892 A0A087WVQ6;Q00610 A0A087WVQ6 897 907 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 3.0795E-07 130.98 By MS/MS By MS/MS 4 2 1.0997 1.2106 20.182 6 Median 1.2135 1.2977 16.022 4 1 Median NaN NaN NaN 0 0 Median 0.82721 1.0253 19.219 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86573000 37590000 48984000 75083000 31843000 43240000 0 0 0 11491000 5747300 5743300 0 0 0 0 0 0 0 0 0 9437 44 9808 46840;46841;46842;46843;46844;46845 46745;46746;46747;46748;46749;46750;46751;46752 46749 7 FLREPVVTPQDLEGPGR PACLLDGLVRLQHLRFLREPVVTPQDLEGP REPVVTPQDLEGPGRAESKESVGSRDSSKR R F L G R A 0 2 0 1 0 1 2 2 0 0 2 0 0 1 3 0 1 0 0 2 0 0 17 1 1909.0058 Q66K74 Q66K74 453 469 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 8.1782E-05 46.621 By MS/MS By MS/MS 2 1 0.64868 0.74128 17.532 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54345 0.66894 23.333 2 0 Median 0.75719 0.74128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18233000 11420000 6812800 0 0 0 0 0 0 16670000 10507000 6163500 1562600 913250 649310 0 0 0 0 0 0 9438 3121 9809 46846;46847;46848 46753;46754;46755 46754 3 FLRPEDPTRPSR KFCDNSSAIQGKEVRFLRPEDPTRPSRFQQ EVRFLRPEDPTRPSRFQQQQGLRHVVFTAE R F L S R F 0 3 0 1 0 0 1 0 0 0 1 0 0 1 3 1 1 0 0 0 0 0 12 2 1469.7739 O15067 O15067 283 294 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2;3 0.00042444 54.7 By matching By MS/MS 1 2 0.65799 0.65682 5.8001 3 Plateau 0.5893 0.65682 NaN 1 0 Median 0.62417 0.64093 7.9552 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15934000 9553300 6380400 2352200 1489000 863260 13581000 8064300 5517200 0 0 0 0 0 0 0 0 0 0 0 0 9439 1518 9810 46849;46850;46851 46756;46757;46758 46757 3 FLRPHYGK RSSTTSMTSVPKPLKFLRPHYGKLKEIYEN SVPKPLKFLRPHYGKLKEIYENMAPGENKR K F L G K L 0 1 0 0 0 0 0 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 8 1 1016.5556 Q13200;C9JPC0;H7C2Q3 Q13200 98 105 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.015731 99.139 By matching By MS/MS 2 1 0.97382 0.96964 36.132 3 Median 1.2721 1.3045 44.992 2 0 Median 0.97382 0.96964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7249500 3626200 3623300 2188200 1035800 1152400 5061400 2590400 2470900 0 0 0 0 0 0 0 0 0 0 0 0 9440 2796 9811 46852;46853;46854 46759;46760 46760 2 FLSAEEYQQK NAGAVVLTPLFKVGKFLSAEEYQQKIIPVV FKVGKFLSAEEYQQKIIPVVVKMFSSTDRA K F L Q K I 1 0 0 0 0 2 2 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 0 1241.5928 E9PPN3;E9PS17;E9PK59;Q96KG9 E9PPN3 197 206 SCYL1 N-terminal kinase-like protein yes no 2 0.011457 42.599 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0823 0.98893 27.584 5 Median 0.78063 0.76159 NaN 1 0 Median 1.3453 1.1944 NaN 1 0 Median 1.0823 1.1815 NaN 1 0 Median 1.1382 0.98893 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77245 0.63897 NaN 1 0 Median 12153000 5499000 6653700 4951500 2247500 2704000 1611300 576650 1034700 2873100 1274700 1598400 1340400 692360 648060 0 0 0 1376300 707780 668550 9441 945 9812 46855;46856;46857;46858;46859 46761;46762 46762 2 FLSAIVSSVDK RLDSSIRNMRAVTDKFLSAIVSSVDKIPYG VTDKFLSAIVSSVDKIPYGMRFIAKVLKDS K F L D K I 1 0 0 1 0 0 0 0 0 1 1 1 0 1 0 3 0 0 0 2 0 0 11 0 1164.639 P46940;A0A0J9YXZ5;H0YLE8 P46940 1145 1155 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0058304 50.108 By MS/MS By MS/MS 1 1 1.1986 1.1059 15.907 2 Median 1.2881 1.2375 NaN 1 1 Median 1.1154 0.98823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17030000 7864400 9165400 5686700 2334600 3352100 11343000 5529800 5813300 0 0 0 0 0 0 0 0 0 0 0 0 9442 2350 9813 46860;46861 46763;46764 46764 2 FLSAIVSSVDKIPYGMR RLDSSIRNMRAVTDKFLSAIVSSVDKIPYG SAIVSSVDKIPYGMRFIAKVLKDSLHEKFP K F L M R F 1 1 0 1 0 0 0 1 0 2 1 1 1 1 1 3 0 0 1 2 0 0 17 1 1882.0023 P46940;A0A0J9YXZ5;H0YLE8 P46940 1145 1161 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 1.9166E-06 90.653 By MS/MS By matching 2 2 0.89713 0.89178 10.278 4 Median 0.883 0.89178 1.0625 2 0 Median 0.98969 0.97062 15.621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12021000 6499000 5521700 9647800 5174100 4473600 2373000 1324900 1048100 0 0 0 0 0 0 0 0 0 0 0 0 9443 2350 9814 46862;46863;46864;46865 46765;46766;46767;46768;46769 46769 5 FLSAVLAAQK RERRFEIPDEEHCLKFLSAVLAAQKAQSQL EHCLKFLSAVLAAQKAQSQLLVPEQKDSSS K F L Q K A 3 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1046.6124 Q01968 Q01968 107 116 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes yes 2 0.01267 41.029 By matching By MS/MS 1 1 1.1716 1.2196 15.51 2 Median 1.1117 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2348 1.3609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9255400 4123300 5132100 3881400 1658200 2223200 0 0 0 5374000 2465100 2908900 0 0 0 0 0 0 0 0 0 9444 2694 9815 46866;46867 46770 46770 1 FLSDPQVHTVLVER EAALEEKSALEQMRKFLSDPQVHTVLVERS KFLSDPQVHTVLVERSTLKEDVGDEGEEEK K F L E R S 0 1 0 1 0 1 1 0 1 0 2 0 0 1 1 1 1 0 0 3 0 0 14 0 1638.873 Q14204 Q14204 68 81 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 7.8822E-09 134.98 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 0.89597 0.87573 15.971 11 Median 0.9214 0.88945 4.278 2 1 Median 1.0373 0.82927 16.795 3 0 Median 0.79695 0.87573 5.8083 3 0 Median 1.0228 0.89143 29.652 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 290990000 150190000 140810000 127180000 66741000 60441000 38284000 19133000 19151000 117700000 60374000 57326000 7827300 3938900 3888400 0 0 0 0 0 0 9445 2865 9816 46868;46869;46870;46871;46872;46873;46874;46875;46876;46877;46878 46771;46772;46773;46774;46775;46776;46777;46778;46779;46780;46781;46782;46783;46784;46785;46786 46772 15 FLSEMLK ARYIELLTRSGDYYRFLSEMLKSLEDLKLK TRSGDYYRFLSEMLKSLEDLKLKNTKIEVL R F L L K S 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 1 0 0 0 0 0 0 7 0 866.45718 P15924 P15924 1016 1022 DSP Desmoplakin yes yes 2 0.043995 43.124 By MS/MS 1 0.4873 0.48628 NaN 1 Median 0.4873 0.48628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6671000 4179100 2491900 6671000 4179100 2491900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9446 2021 9817 46879 46787 46787 1 FLSHLVDGVK ASVRRSLFNNAERAKFLSHLVDGVKRILEN AERAKFLSHLVDGVKRILENPQSLSDPNNY K F L V K R 0 0 0 1 0 0 0 1 1 0 2 1 0 1 0 1 0 0 0 2 0 0 10 0 1113.6182 E7ESC6;Q9UIA9 E7ESC6 304 313 XPO7 Exportin-7 yes no 2 0.032874 33.263 By matching By MS/MS By matching 1 1 1 1.1556 1.0649 47.175 3 Plateau 0.76027 0.75341 NaN 1 0 Median 1.3912 1.1952 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55448 0.4653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7521600 3298500 4223100 2709200 1225800 1483400 4189800 1784700 2405100 0 0 0 622620 287960 334650 0 0 0 0 0 0 9447 885 9818 46880;46881;46882 46788 46788 1 FLSHLVDGVKR ASVRRSLFNNAERAKFLSHLVDGVKRILEN ERAKFLSHLVDGVKRILENPQSLSDPNNYH K F L K R I 0 1 0 1 0 0 0 1 1 0 2 1 0 1 0 1 0 0 0 2 0 0 11 1 1269.7194 E7ESC6;Q9UIA9 E7ESC6 304 314 XPO7 Exportin-7 yes no 2;3 8.3113E-05 86.136 By MS/MS By MS/MS By matching 2 2 1 1.1486 1.1959 36.183 5 Median 1.04 1.0832 13.996 2 0 Median 1.2876 1.2086 43.792 2 0 Median NaN NaN NaN 0 0 Median 1.9754 2.1115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28402000 13407000 14995000 18452000 8502600 9949100 9223000 4616500 4606500 0 0 0 727320 287460 439860 0 0 0 0 0 0 9448 885 9819 46883;46884;46885;46886;46887 46789;46790;46791;46792 46789 3 FLSLDYIPQR DIGEQLDSEDLASLKFLSLDYIPQRKQEPI LASLKFLSLDYIPQRKQEPIKDALMLFQRL K F L Q R K 0 1 0 1 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 10 0 1250.6659 E7EQ01;E7EVN1;E7ETB7;E7EQ06;A0A0A0MS31;Q14790 E7EQ01 24 33 CASP8 Caspase-8;Caspase-8 subunit p18;Caspase-8 subunit p10 yes no 2 0.0015147 64.836 By MS/MS By matching By matching 1 1 2 0.98569 0.87353 66.812 4 Median 0.77038 0.76868 NaN 1 0 Median 3.1652 3.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98569 0.8511 21.762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520300 1696100 1824200 2499300 1362300 1137000 522630 100890 421740 0 0 0 498350 232880 265480 0 0 0 0 0 0 9449 174 9820 46888;46889;46890;46891 46793;46794 46793 2 FLSLPEVR FLRCTEPEDQLYYVKFLSLPEVRQAIHVGN DQLYYVKFLSLPEVRQAIHVGNQTFNDGTI K F L V R Q 0 1 0 0 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 8 0 959.54402 Q9H3G5;H7C0X5 Q9H3G5 332 339 CPVL Probable serine carboxypeptidase CPVL yes no 2 0.0025526 107.32 By MS/MS By MS/MS By matching By matching 1 2 2 1 1.2038 1.175 60.262 6 Median 1.6374 1.5691 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.61858 0.5962 55.033 2 0 Median 2.0223 1.7651 9.2278 2 0 Median 0.71702 0.70005 NaN 1 0 Median NaN NaN NaN 0 0 Median 20709000 9088900 11620000 10135000 3574300 6561200 0 0 0 8451000 4617000 3834000 889040 273070 615970 1233100 624620 608460 0 0 0 9450 3952 9821 46892;46893;46894;46895;46896;46897 46795;46796;46797 46797 3 FLSLQSEHK SDKEVQMHFAELQEKFLSLQSEHKILHDQH AELQEKFLSLQSEHKILHDQHCQMSSKMSE K F L H K I 0 0 0 0 0 1 1 0 1 0 2 1 0 1 0 2 0 0 0 0 0 0 9 0 1087.5662 P49454 P49454 1411 1419 CENPF Centromere protein F yes yes 2 0.0032979 66.073 By MS/MS 1 1.0376 1.1362 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0376 1.1362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1990700 928560 1062100 0 0 0 0 0 0 1990700 928560 1062100 0 0 0 0 0 0 0 0 0 9451 2383 9822 46898 46798 46798 1 FLSLYGDQIDMHR SSVPHGAGYELLIQKFLSLYGDQIDMHRKF QKFLSLYGDQIDMHRKFVVQLFAEEWGQYV K F L H R K 0 1 0 2 0 1 0 1 1 1 2 0 1 1 0 1 0 0 1 0 0 0 13 0 1593.761 Q96CN7;D6RGE2 Q96CN7 54 66 ISOC1 Isochorismatase domain-containing protein 1 yes no 3 0.00037791 54.524 By MS/MS By matching 1 1 1.1967 1.1407 4.0352 2 Median 1.1838 1.1086 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2097 1.1737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8461100 3844900 4616200 6570700 3149000 3421700 0 0 0 1890400 695920 1194400 0 0 0 0 0 0 0 0 0 9452 3619 9823 46899;46900 46799;46800 46799 2 FLSNGHVTIPGQQDK HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK FLSNGHVTIPGQQDKDMFQETMEAMRIMGI R F L D K D 0 0 1 1 0 2 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 0 15 0 1639.8318 P35579 P35579 302 316 MYH9 Myosin-9 yes yes 2;3 1.7569E-18 110.66 By MS/MS By MS/MS By matching 1 2 1 0.96967 0.86302 11.529 3 Plateau 0.92054 0.89149 NaN 1 0 Median 0.97447 0.86302 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79008 0.7198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28361000 13964000 14396000 9596000 4728100 4867800 17631000 8584000 9046800 0 0 0 1134100 652400 481710 0 0 0 0 0 0 9453 2244 9824 46901;46902;46903;46904 46801;46802;46803;46804;46805 46805 5 FLSNGHVTIPGQQDKDMFQETMEAMR HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK QQDKDMFQETMEAMRIMGIPEEEQMGLLRV R F L M R I 1 1 1 2 0 3 2 2 1 1 1 1 3 2 1 1 2 0 0 1 0 0 26 1 3009.3783 P35579 P35579 302 327 MYH9 Myosin-9 yes yes 3;4 6.395E-28 95.366 By MS/MS By matching 2 1 1.0071 1.0109 15.661 3 Plateau 1.0028 1.0058 6.8752 2 0 Median 0.81425 0.77718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31807000 14513000 17294000 30008000 13587000 16421000 1799300 926610 872650 0 0 0 0 0 0 0 0 0 0 0 0 9454 2244 9825 46905;46906;46907 46806;46807;46808 46808 3 FLSNGYIPIPGQQDK HLKSDLLLEGFNNYRFLSNGYIPIPGQQDK FLSNGYIPIPGQQDKDNFQETMEAMHIMGF R F L D K D 0 0 1 1 0 2 0 2 0 2 1 1 0 1 2 1 0 0 1 0 0 0 15 0 1675.857 P35580 P35580 309 323 MYH10 Myosin-10 yes yes 2 0.00016953 76.332 By MS/MS By matching By MS/MS 1 1 1 0.73156 0.70634 28.896 3 Median 0.73156 0.70634 NaN 1 0 Median 1.0264 0.91145 NaN 1 0 Median 0.45984 0.51204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22824000 12962000 9861900 13868000 7494800 6372800 3358000 1681700 1676300 5598000 3785200 1812800 0 0 0 0 0 0 0 0 0 9455 2245 9826 46908;46909;46910 46809;46810;46811 46809 3 FLSPEFIPR PVIVDKHRPVEPERRFLSPEFIPRRGRTDP VEPERRFLSPEFIPRRGRTDPLKFQIERKD R F L P R R 0 1 0 0 0 0 1 0 0 1 1 0 0 2 2 1 0 0 0 0 0 0 9 0 1104.5968 P49406;A0A0A0MRF4 P49406 75 83 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.0036618 63.565 By MS/MS By MS/MS By MS/MS 1 1 1 1.0257 1.0145 12.887 3 Median 0.88074 0.82444 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0257 1.0145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0479 1.0441 NaN 1 0 Median NaN NaN NaN 0 0 Median 21789000 10408000 11381000 12525000 6079800 6445500 0 0 0 4134000 1960100 2173900 0 0 0 5129600 2368000 2761600 0 0 0 9456 2380 9827 46911;46912;46913 46812;46813;46814;46815;46816 46812 5 FLSPPALQGYVAWLR NQGLPVTPTFWRVVRFLSPPALQGYVAWLR FLSPPALQGYVAWLRAMFLQPDLDSLVDFS R F L L R A 2 1 0 0 0 1 0 1 0 0 3 0 0 1 2 1 0 1 1 1 0 0 15 0 1716.9352 Q9BQG0;I3L1L3 Q9BQG0 397 411 MYBBP1A Myb-binding protein 1A yes no 2 2.2048E-10 109.42 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 0.90457 0.83402 25.477 9 Median 1.3829 1.3709 NaN 1 0 Median 0.79387 0.69903 29.72 2 0 Median 0.92686 0.99357 17.508 2 0 Median NaN NaN NaN 0 0 Median 0.74074 0.76504 12.209 2 0 Median 0.91873 0.79299 1.2272 2 0 Median 12115000 6608100 5506600 393910 145960 247950 1391900 711580 680370 7039800 3900800 3139000 0 0 0 2963700 1685200 1278500 325300 164550 160760 9457 3789 9828 46914;46915;46916;46917;46918;46919;46920;46921;46922 46817;46818;46819;46820;46821;46822;46823 46819 7 FLSPQDTFEALKR LKDHVGRNNGNGLVKFLSPQDTFEALKRNR VKFLSPQDTFEALKRNRMLMIQRYVEVSPA K F L K R N 1 1 0 1 0 1 1 0 0 0 2 1 0 2 1 1 1 0 0 0 0 0 13 1 1550.8093 Q9NTZ6 Q9NTZ6 350 362 RBM12 RNA-binding protein 12 yes yes 3 0.00023292 61.375 By MS/MS By MS/MS 1 1 0.84747 0.92134 6.3766 2 Median 0.92597 0.96383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77561 0.88072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10176000 5231400 4945000 5796000 2951400 2844500 0 0 0 4380500 2280000 2100500 0 0 0 0 0 0 0 0 0 9458 4111 9829 46923;46924 46824;46825;46826 46824 3 FLSPVVPNYDNVHPNYHK DPQVYEELFSYSCPKFLSPVVPNYDNVHPN PVVPNYDNVHPNYHKEPFLQQLKVFSDEVQ K F L H K E 0 0 3 1 0 0 0 0 2 0 1 1 0 1 3 1 0 0 2 3 0 0 18 0 2139.0538 B0QY89;Q9Y262;B0QY90 B0QY89 463 480 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 3 7.0335E-05 42.382 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.79732 0.68243 36.173 4 Median 1.221 1.1399 NaN 1 0 Median 0.80257 0.68499 NaN 1 0 Median 0.46977 0.47285 NaN 1 0 Median 0.7921 0.67988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31883000 13581000 18302000 21966000 7953900 14012000 4135000 2226600 1908400 4715900 2789700 1926200 1066000 610450 455530 0 0 0 0 0 0 9459 554 9830 46925;46926;46927;46928 46827;46828 46827 2 FLSQIESDR QISETLKTRGIFETKFLSQIESDRLALLQV GIFETKFLSQIESDRLALLQVRAILQQLGL K F L D R L 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 9 0 1093.5404 P19367;Q2TB90 P19367 786 794 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 2 0.00043177 128.69 By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1.4543 1.2459 19.261 6 Median 1.0831 1.0424 NaN 1 0 Median 1.3372 1.1561 NaN 1 0 Median 1.3032 1.3312 28.997 2 0 Median 1.7016 1.4553 11.396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54658000 23623000 31035000 20609000 9436500 11173000 15822000 6526600 9295600 10588000 4994500 5593100 7639300 2665600 4973800 0 0 0 0 0 0 9460 2064 9831 46929;46930;46931;46932;46933;46934 46829;46830;46831;46832;46833 46830 5 FLSQIESDRLALLQVR QISETLKTRGIFETKFLSQIESDRLALLQV LSQIESDRLALLQVRAILQQLGLNSTCDDS K F L V R A 1 2 0 1 0 2 1 0 0 1 4 0 0 1 0 2 0 0 0 1 0 0 16 1 1887.0578 P19367;Q2TB90 P19367 786 801 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 3 0.0031554 27.029 By MS/MS By matching 1 1 1.1298 1.1845 12.284 2 Median 0.97743 1.0859 NaN 1 0 Median 1.3058 1.292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10417000 4953600 5463700 10112000 4863600 5248000 305760 90017 215740 0 0 0 0 0 0 0 0 0 0 0 0 9461 2064 9832 46935;46936 46834;46835 46835 2 FLSQLIQK KMDPEAREQAYQERRFLSQLIQKFISVLKS QAYQERRFLSQLIQKFISVLKSVPLSEPVT R F L Q K F 0 0 0 0 0 2 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 975.57532 O60306;H0YH15 O60306 221 228 AQR Intron-binding protein aquarius yes no 2 0.028842 40.103 By MS/MS By matching 1 1 1.5504 1.4067 32.159 2 Median 1.1759 1.1206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0441 1.7659 NaN 1 0 Median 3000400 1284800 1715600 2698400 1166100 1532300 0 0 0 0 0 0 0 0 0 0 0 0 301930 118670 183260 9462 1611 9833 46937;46938 46836 46836 1 FLSQPFQVAEVFTGHMGK EEDKLTVSRARKIQRFLSQPFQVAEVFTGH QPFQVAEVFTGHMGKLVPLKETIKGFQQIL R F L G K L 1 0 0 0 0 2 1 2 1 0 1 1 1 3 1 1 1 0 0 2 0 0 18 0 2022.0033 P06576 P06576 463 480 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2;3 1.595E-06 83.314 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1.0106 0.9465 92.698 8 Median 0.95621 0.8853 46.761 4 0 Median 3.1893 2.7279 141.14 2 0 Median 0.59012 0.60394 79.175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67130000 32658000 34471000 47291000 24160000 23130000 15933000 6598800 9334400 3784600 1843800 1940800 0 0 0 0 0 0 121310 55489 65817 9463 1872 9834 46939;46940;46941;46942;46943;46944;46945;46946;46947 46837;46838;46839;46840;46841;46842;46843;46844;46845 46841 9 FLSSAAAVSK GAAMNVAYTDGDLERFLSSAAAVSKEHPVV GDLERFLSSAAAVSKEHPVVISKFIQEAKE R F L S K E 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 3 0 0 0 1 0 0 10 0 979.53385 F8VPD4;P27708 F8VPD4 1047 1056 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00077271 71.451 By MS/MS By MS/MS By MS/MS 3 1 1 1.2705 1.1523 18.199 4 Median 1.4024 1.369 8.8356 2 1 Median 1.1217 0.99351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2048 1.0325 NaN 1 0 Median 26003000 11745000 14259000 8825600 3926100 4899500 15332000 6922600 8409600 0 0 0 0 0 0 0 0 0 1845400 895940 949470 9464 1057 9835 46948;46949;46950;46951;46952 46846;46847;46848;46849;46850;46851;46852 46849 7 FLSSIGGTLYEVGKPEMQQK DQTCIHPESYDIAMRFLSSIGGTLYEVGKP GGTLYEVGKPEMQQKINSFLEKEGMEKIAE R F L Q K I 0 0 0 0 0 2 2 3 0 1 2 2 1 1 1 2 1 0 1 1 0 0 20 1 2211.1246 Q8N5C6 Q8N5C6 839 858 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 0.027486 22.221 By MS/MS 1 0.88769 1.0154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88769 1.0154 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3396600 1792400 1604200 0 0 0 0 0 0 3396600 1792400 1604200 0 0 0 0 0 0 0 0 0 9465 3377 9836 46953 46853 46853 1 FLSTEAISIMR EVFDSIVNDEVRYPRFLSTEAISIMRRLLR RYPRFLSTEAISIMRRLLRRNPERRLGASE R F L M R R 1 1 0 0 0 0 1 0 0 2 1 0 1 1 0 2 1 0 0 0 0 0 11 0 1266.6642 Q16513 Q16513 879 889 PKN2 Serine/threonine-protein kinase N2 yes yes 2 0.005015 46.891 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0412 1.121 17.307 5 Median 1.2144 1.1772 NaN 1 0 Median 0.991 0.86003 NaN 1 0 Median 1.0412 1.1434 NaN 1 0 Median 1.2897 1.121 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96371 0.81838 NaN 1 0 Median 8487100 3940200 4546900 3592800 1549800 2042900 1291700 649050 642690 3139700 1555500 1584200 347260 145160 202100 0 0 0 115580 40691 74890 9466 2982 9837 46954;46955;46956;46957;46958 46854 46854 1 FLSTLLDSFSSSR SINYVNERKSEQHLRFLSTLLDSFSSSRVF LRFLSTLLDSFSSSRVFKMLLGDEKQSIVQ R F L S R V 0 1 0 1 0 0 0 0 0 0 3 0 0 2 0 5 1 0 0 0 0 0 13 0 1458.7355 O94822;H7BYG8 O94822 616 628 LTN1 E3 ubiquitin-protein ligase listerin yes no 2 0.0014451 53.683 By MS/MS 1 0.94159 0.79584 NaN 1 Median NaN NaN NaN 0 0 Median 0.94159 0.79584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2542300 1346000 1196300 0 0 0 2542300 1346000 1196300 0 0 0 0 0 0 0 0 0 0 0 0 9467 1727 9838 46959 46855 46855 1 FLSVLER AAFEEPELLAQDIRKFLSVLERQ_______ LLAQDIRKFLSVLERQ______________ K F L E R Q 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 7 0 862.49125 P07099 P07099 448 454 EPHX1 Epoxide hydrolase 1 yes yes 2 0.016334 68.915 By MS/MS 1 1.0815 1.0587 NaN 1 Median 1.0815 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5373700 2174500 3199200 5373700 2174500 3199200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9468 1879 9839 46960 46856;46857 46856 2 FLTAISVVK KCTHLIASKVTRTVKFLTAISVVKHIVTPE VTRTVKFLTAISVVKHIVTPEWLEECFRCQ K F L V K H 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 2 0 0 9 0 976.59572 Q6ZW49 Q6ZW49 914 922 PAXIP1 PAX-interacting protein 1 yes yes 2 0.017009 42.109 By MS/MS 1 0.93484 1.0125 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93484 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305300 1615200 1690000 0 0 0 0 0 0 3305300 1615200 1690000 0 0 0 0 0 0 0 0 0 9469 3203 9840 46961 46858;46859 46859 2 FLTALAQDGVINEEALSVTELDR LENDLKSVNFDMTSKFLTALAQDGVINEEA GVINEEALSVTELDRVYGGLTTKVQESLKK K F L D R V 3 1 1 2 0 1 3 1 0 1 4 0 0 1 0 1 2 0 0 2 0 0 23 0 2503.2806 Q8WUM4 Q8WUM4 584 606 PDCD6IP Programmed cell death 6-interacting protein yes yes 3 0.0011947 26.204 By MS/MS 1 1.1823 1.0262 NaN 1 Median NaN NaN NaN 0 0 Median 1.1823 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2391000 1190600 1200500 0 0 0 2391000 1190600 1200500 0 0 0 0 0 0 0 0 0 0 0 0 9470 3493 9841 46962 46860;46861 46861 2 FLTAVNLEHPEMLEK FLSVMLEKGSLSAMRFLTAVNLEHPEMLEK FLTAVNLEHPEMLEKASRELWMRVWSRNED R F L E K A 1 0 1 0 0 0 3 0 1 0 3 1 1 1 1 0 1 0 0 1 0 0 15 0 1769.9022 Q9Y2Q3;E9PFN5;C9JNT3 Q9Y2Q3 102 116 GSTK1 Glutathione S-transferase kappa 1 yes no 3 0.025821 18.364 By MS/MS By matching By matching 1 1 1 1.0564 0.97322 11.358 3 Median 0.87935 0.8172 NaN 1 0 Median 1.1386 0.97322 NaN 1 0 Median 1.0564 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20845000 11339000 9505400 18579000 10204000 8374600 839530 399360 440170 1426600 735890 690670 0 0 0 0 0 0 0 0 0 9471 4386 9842 46963;46964;46965 46862 46862 1 FLTDGMLLR TVRFDDVTSEDTRIKFLTDGMLLREAISDS EDTRIKFLTDGMLLREAISDSLLRKYSCVI K F L L R E 0 1 0 1 0 0 0 1 0 0 3 0 1 1 0 0 1 0 0 0 0 0 9 0 1064.5689 Q9H6R0;I3L1L6 Q9H6R0 169 177 DHX33 Putative ATP-dependent RNA helicase DHX33 yes no 2 0.013814 45.081 By MS/MS By matching By matching By matching 1 1 1 1 1.2061 1.5148 35.172 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2489 1.3235 NaN 1 0 Median 1.4083 1.1763 NaN 1 0 Median 1.1648 1.2435 NaN 1 0 Median 0.66511 0.62089 NaN 1 0 Median 4938100 2254900 2683200 0 0 0 0 0 0 3248000 1310200 1937900 223860 109190 114660 1408700 810110 598580 57543 25457 32085 9472 3975 9843 46966;46967;46968;46969 46863 46863 1 FLTDTSHLLSAVK RQWQDFTTSVENLFRFLTDTSHLLSAVKGQ FRFLTDTSHLLSAVKGQERFSLYQTRSLIH R F L V K G 1 0 0 1 0 0 0 0 1 0 3 1 0 1 0 2 2 0 0 1 0 0 13 0 1430.7769 Q8WXH0;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5715 5727 SYNE2 Nesprin-2 yes no 3 0.00060029 48.659 By MS/MS By matching 1 1 0.85658 0.9114 15.831 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95213 1.0193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77062 0.81488 NaN 1 0 Median NaN NaN NaN 0 0 Median 10333000 5715400 4617300 0 0 0 0 0 0 8608100 4905900 3702200 0 0 0 1724500 809450 915090 0 0 0 9473 3521 9844 46970;46971 46864;46865 46865 2 FLTDYLNDLQGR GRTIMKMTHSELMEKFLTDYLNDLQGRNDD MEKFLTDYLNDLQGRNDDDASGTWDFYGSS K F L G R N 0 1 1 2 0 1 0 1 0 0 3 0 0 1 0 0 1 0 1 0 0 0 12 0 1453.7201 Q6W2J9;H7C2V9;A6NE70;H7BZ37 Q6W2J9 1578 1589 BCOR BCL-6 corepressor yes no 2 5.2871E-06 99.815 By MS/MS 2 1.2656 1.3809 50.348 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2656 1.3809 50.348 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5138900 2649500 2489400 0 0 0 0 0 0 5138900 2649500 2489400 0 0 0 0 0 0 0 0 0 9474 3191 9845 46972;46973 46866;46867 46866 2 FLTFAER MKTKPVSHKTENTYRFLTFAERLGNVNIDI HKTENTYRFLTFAERLGNVNIDIIHRIDRT R F L E R L 1 1 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 882.45995 O75691 O75691 16 22 UTP20 Small subunit processome component 20 homolog yes yes 2 0.016334 68.915 By MS/MS By matching By matching 2 2 1 1.201 1.1503 17.113 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1529 1.272 14.216 2 0 Median 1.1836 1.027 2.3565 2 0 Median 1.4044 1.4697 NaN 1 0 Median NaN NaN NaN 0 0 Median 9992200 4490700 5501500 0 0 0 0 0 0 7228700 3361900 3866800 828210 360740 467470 1935300 768020 1167200 0 0 0 9475 1691 9846 46974;46975;46976;46977;46978 46868;46869;46870 46869 3 FLTFDSPEGK PYDLERPLETDSDLRFLTFDSPEGKAVFWH DSDLRFLTFDSPEGKAVFWHSSTHVLGAAA R F L G K A 0 0 0 1 0 0 1 1 0 0 1 1 0 2 1 1 1 0 0 0 0 0 10 0 1139.5499 Q9BW92;U3KQG0;U3KQ50 Q9BW92 119 128 TARS2 Threonine--tRNA ligase, mitochondrial yes no 2 0.017044 38.086 By MS/MS By matching 1 1 0.68137 0.61372 96.777 2 Median 0.33499 0.30958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3859 1.2166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7058500 4414700 2643800 6661700 4243300 2418500 0 0 0 0 0 0 396780 171460 225320 0 0 0 0 0 0 9476 3867 9847 46979;46980 46871 46871 1 FLTGNQWSFINNNLHTQSLNR AAAAKKPLNGKDRERFLTGNQWSFINNNLH WSFINNNLHTQSLNRSSKGSSSLDRLYSRK R F L N R S 0 1 5 0 0 2 0 1 1 1 3 0 0 2 0 2 2 1 0 0 0 0 21 0 2503.2357 A0A3B3IUB9 A0A3B3IUB9 2124 2144 yes yes 3 4.7465E-09 56.055 By MS/MS By matching 1 1 1.1877 1.0808 17.878 2 Median 1.2449 1.2264 NaN 1 0 Median 1.1332 0.95244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10492000 4667400 5824500 8586100 3684300 4901800 1905800 983150 922690 0 0 0 0 0 0 0 0 0 0 0 0 9477 445 9848 46981;46982 46872 46872 1 FLTLPPVLHLQLMR DAGEHGLQEAEKGVKFLTLPPVLHLQLMRF KFLTLPPVLHLQLMRFMYDPQTDQNIKIND K F L M R F 0 1 0 0 0 1 0 0 1 0 5 0 1 1 2 0 1 0 0 1 0 0 14 0 1676.98 Q93009;H3BND8;F5H2X1 Q93009 395 408 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 0.00018094 78.934 By MS/MS By MS/MS By MS/MS 3 3 3 0.82317 0.81522 18.102 9 Median 0.84226 0.83854 22.464 3 0 Median 0.90394 0.79737 17.845 3 0 Median 0.72572 0.79406 10.146 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9498100 5199500 4298600 3212800 1734100 1478700 1564200 831680 732510 4721100 2633700 2087400 0 0 0 0 0 0 0 0 0 9478 3574 9849 46983;46984;46985;46986;46987;46988;46989;46990;46991 46873;46874;46875;46876;46877 46877 5 FLTNGPSSSPGQER QLKADLLLEPCSHYRFLTNGPSSSPGQERE RFLTNGPSSSPGQERELFQETLESLRVLGF R F L E R E 0 1 1 0 0 1 1 2 0 0 1 0 0 1 2 3 1 0 0 0 0 0 14 0 1475.7005 Q7Z406 Q7Z406 329 342 MYH14 Myosin-14 no no 2 1.895E-08 107.83 By MS/MS 1 0.90416 0.76223 NaN 1 Median NaN NaN NaN 0 0 Median 0.90416 0.76223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2183000 850540 1332400 0 0 0 2183000 850540 1332400 0 0 0 0 0 0 0 0 0 0 0 0 9479 3242 9850 46992 46878;46879 46879 2 FLTPIYHPNIDSAGR VIIPERYPFEPPQIRFLTPIYHPNIDSAGR FLTPIYHPNIDSAGRICLDVLKLPPKGAWR R F L G R I 1 1 1 1 0 0 0 1 1 2 1 0 0 1 2 1 1 0 1 0 0 0 15 0 1699.8682 Q9NPD8 Q9NPD8 70 84 UBE2T Ubiquitin-conjugating enzyme E2 T yes yes 2;3 0.00024873 62.408 By MS/MS By matching 3 2 0.88449 0.83935 70.388 4 Median 0.88449 0.83935 8.3031 2 1 Median 0.55858 0.47361 107.33 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34311000 18910000 15401000 31080000 16884000 14196000 3231100 2026000 1205200 0 0 0 0 0 0 0 0 0 0 0 0 9480 4047 9851 46993;46994;46995;46996;46997 46880;46881;46882 46880 3 FLTQPQVVAR AYGAAKAGGSFDLRRFLTQPQVVARAVCLL FDLRRFLTQPQVVARAVCLLSGPSCGLLVS R F L A R A 1 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 10 0 1157.6557 K7ELD9;K7ENG9;K7ELS8;O43760 K7ELD9 20 29 SYNGR2 Synaptogyrin-2 yes no 2 0.00054568 116.73 By MS/MS By MS/MS 1 3 1.081 0.97253 16.766 4 Median 1.0636 1.0114 NaN 1 0 Median 1.0988 0.93518 19.62 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71438000 33543000 37895000 42247000 20105000 22142000 29191000 13438000 15754000 0 0 0 0 0 0 0 0 0 0 0 0 9481 1376 9852 46998;46999;47000;47001 46883;46884;46885;46886 46884 4 FLTSQTK VVRGMDLQPGNALKRFLTSQTKLHEDLCEK QPGNALKRFLTSQTKLHEDLCEKRTAATLA R F L T K L 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 0 0 0 7 0 823.44397 Q8N1G4 Q8N1G4 355 361 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.053242 38.792 By matching By MS/MS By matching 1 1 1 1.1544 1.0008 14.51 3 Median 1.2787 1.2381 NaN 1 0 Median 1.093 0.93833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1544 1.0008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4897700 2353900 2543800 1310800 613320 697460 3420500 1668700 1751800 0 0 0 166390 71803 94587 0 0 0 0 0 0 9482 3359 9853 47002;47003;47004 46887 46887 1 FLTTYHELIPSR TLDSVLQTFDAKRPKFLTTYHELIPSRKDL RPKFLTTYHELIPSRKDLFMNTLYLKYSNI K F L S R K 0 1 0 0 0 0 1 0 1 1 2 0 0 1 1 1 2 0 1 0 0 0 12 0 1475.7773 Q9NZJ4 Q9NZJ4 3173 3184 SACS Sacsin yes yes 3 0.066203 21.301 By MS/MS 1 0.81982 0.91844 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81982 0.91844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1629300 958510 670780 0 0 0 0 0 0 1629300 958510 670780 0 0 0 0 0 0 0 0 0 9483 4189 9854 47005 46888 46888 1 FLTVMMK KRQVLIRPCSKVIVRFLTVMMKHGYIGEFE PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA R F L M K H 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 0 1 0 0 1 0 0 7 0 868.45507 H3BN98;I3L3P7;P62244;I3L246;H3BV27;H3BT37;I3L303 I3L3P7 37 43 RPS15A 40S ribosomal protein S15a no no 1;2 0.012756 75.311 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 9 10 4 4 6 4 1.2929 1.1753 27.512 37 Median 1.1553 1.0648 11.323 9 0 Median 1.2454 1.0353 46.912 10 0 Median 1.3365 1.2895 17.783 4 0 Median 1.4255 1.1518 3.295 4 0 Median 1.3389 1.4424 9.0472 6 0 Median 1.5519 1.2505 18.177 4 0 Median 763770000 344340000 419430000 240570000 110320000 130250000 452930000 204560000 248370000 28351000 11592000 16759000 15207000 6360600 8845900 20147000 8848900 11298000 6563000 2657600 3905300 9484 1289;1213 9855;9856;9857 47006;47007;47008;47009;47010;47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030;47031;47032;47033;47034;47035;47036;47037;47038;47039;47040;47041;47042 46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904;46905 46898 407;408 17 FLTWILNR YGTCPHGGYGLGLERFLTWILNRYHIRDVC YGLGLERFLTWILNRYHIRDVCLYPRFVQR R F L N R Y 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 0 1 1 0 0 0 0 8 0 1061.6022 O43776 O43776 523 530 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.001738 143.02 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.275 1.1595 4.8672 6 Median 1.2055 1.1449 NaN 1 0 Median 1.275 1.1069 5.5256 2 0 Median 1.2327 1.2313 NaN 1 0 Median 1.3215 1.168 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3459 1.1901 NaN 1 0 Median 64829000 28988000 35841000 12096000 5538200 6557600 39803000 17690000 22113000 12774000 5694800 7079600 89286 35752 53534 0 0 0 66555 29714 36841 9485 1589 9858 47043;47044;47045;47046;47047;47048 46906;46907;46908;46909;46910;46911;46912 46911 7 FLTYFPGR FGALLSDQGFDLMNKFLTYFPGRRISAEDG GFDLMNKFLTYFPGRRISAEDGLKHEYFRE K F L G R R 0 1 0 0 0 0 0 1 0 0 1 0 0 2 1 0 1 0 1 0 0 0 8 0 999.5178 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 654 661 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.008475 62.714 By matching By MS/MS By matching 1 1 2 1.1414 1.0759 14.561 4 Median 0.85976 0.85859 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99591 1.0659 NaN 1 0 Median 1.3394 1.1495 8.0498 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4239300 2067300 2172000 1502000 724050 777950 0 0 0 2410000 1185400 1224600 327360 157870 169490 0 0 0 0 0 0 9486 259 9859 47049;47050;47051;47052 46913;46914 46913 2 FLVDQGYSFK SQDTQEMAYSTKRQRFLVDQGYSFKVITKL TKRQRFLVDQGYSFKVITKLAGMEEEDLAF R F L F K V 0 0 0 1 0 1 0 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 10 0 1202.5972 A0A2R8Y6W8;P19447 A0A2R8Y6W8 704 713 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.0010092 88.948 By MS/MS 2 0.92153 1.0172 3.7564 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92153 1.0172 3.7564 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9044500 4599000 4445500 0 0 0 0 0 0 9044500 4599000 4445500 0 0 0 0 0 0 0 0 0 9487 378 9860 47053;47054 46915;46916 46916 2 FLVGFTNK LFVKGEDFPANNIVKFLVGFTNKGTEDFIV PANNIVKFLVGFTNKGTEDFIVESLDASFR K F L N K G 0 0 1 0 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 924.5069 C9J3L8;C9J5W0;A0A3B3IRT8;E9PAL7;C9IZQ1;P43307 C9J3L8 103 110 SSR1 Translocon-associated protein subunit alpha yes no 2 0.0025265 107.59 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.3438 1.1962 6.7215 4 Median 1.1755 1.0633 NaN 1 0 Median 1.4052 1.1798 NaN 1 0 Median 1.285 1.2364 NaN 1 0 Median 1.4407 1.2128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123290000 55287000 68007000 93974000 43289000 50684000 15176000 6050300 9125600 10378000 4465800 5912100 3766300 1481300 2285000 0 0 0 0 0 0 9488 417 9861 47055;47056;47057;47058 46917;46918;46919;46920;46921 46917 5 FLVGPDGVPLRR WSPVCRNDVAWNFEKFLVGPDGVPLRRYSR FEKFLVGPDGVPLRRYSRRFQTIDIEPDIE K F L R R Y 0 2 0 1 0 0 0 2 0 0 2 0 0 1 2 0 0 0 0 2 0 0 12 1 1324.7616 A0A087WUQ6;P07203;A0A2R8Y6B6 A0A087WUQ6 166 177 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 2;3 0.00029535 63.419 By MS/MS By matching 3 1 1.5824 1.6915 26.292 3 Median 1.3323 1.4242 24.332 2 1 Median 2.1967 2.0096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23765000 11471000 12295000 23298000 11336000 11962000 467220 134690 332530 0 0 0 0 0 0 0 0 0 0 0 0 9489 33 9862 47059;47060;47061;47062 46922;46923;46924 46922 3 FLVGPYQNTIGAAFVAK YVGKTSLVERYVHDRFLVGPYQNTIGAAFV VGPYQNTIGAAFVAKVMSVGDRTVTLGIWD R F L A K V 3 0 1 0 0 1 0 2 0 1 1 1 0 2 1 0 1 0 1 2 0 0 17 0 1794.9669 Q969Q5;D6RFW3 Q969Q5 32 48 RAB24 Ras-related protein Rab-24 yes no 2 0.0042988 31.843 By MS/MS By matching 1 1 0.81881 0.73255 32.709 2 Median 0.62382 0.58128 NaN 1 0 Median 1.0748 0.92317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4783500 2451400 2332200 4448400 2285800 2162600 335120 165610 169520 0 0 0 0 0 0 0 0 0 0 0 0 9490 3584 9863 47063;47064 46925 46925 1 FLVHNVK SNKKTKHMLPSGFRKFLVHNVKELEVLLMC MLPSGFRKFLVHNVKELEVLLMCNKSYCAE K F L V K E 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 7 0 855.49667 D3YTB1;F8W727;P62910 D3YTB1 77 83 RPL32 60S ribosomal protein L32 yes no 2 0.005702 95.957 By matching By MS/MS By MS/MS By MS/MS By matching By matching 4 4 1 3 3 2 1.2459 1.1137 22.377 17 Median 1.1158 1.0242 23.225 4 0 Median 1.2676 1.067 11.884 4 0 Median 1.1502 1.086 NaN 1 0 Median 1.3125 1.0826 23.527 3 0 Median 1.2459 1.3582 26.419 3 0 Median 1.495 1.2174 12.571 2 0 Median 65904000 29884000 36020000 14925000 6904000 8021100 39102000 17729000 21373000 5225500 2527900 2697600 1207100 461180 745900 3882900 1628700 2254200 1561900 633300 928630 9491 798 9864 47065;47066;47067;47068;47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079;47080;47081 46926;46927;46928;46929;46930;46931;46932 46928 7 FLVIGNAGTGK MSQTAMSETYDFLFKFLVIGNAGTGKSCLL FLFKFLVIGNAGTGKSCLLHQFIEKKFKDD K F L G K S 1 0 1 0 0 0 0 3 0 1 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1075.6026 P20338 P20338 16 26 RAB4A Ras-related protein Rab-4A yes yes 2 0.047152 45.161 By MS/MS 1 1.1961 1.0134 NaN 1 Median NaN NaN NaN 0 0 Median 1.1961 1.0134 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2213100 941950 1271100 0 0 0 2213100 941950 1271100 0 0 0 0 0 0 0 0 0 0 0 0 9492 2077 9865 47082 46933 46933 1 FLVLPSLGR IPTCMGFGVHQDKYRFLVLPSLGRSLQSAL HQDKYRFLVLPSLGRSLQSALDVSPKHVLS R F L G R S 0 1 0 0 0 0 0 1 0 0 3 0 0 1 1 1 0 0 0 1 0 0 9 0 1000.607 M0R073;M0QYA8;Q8IV63 M0R073 206 214 VRK3 Inactive serine/threonine-protein kinase VRK3 yes no 2 0.015787 43.246 By matching By matching By MS/MS 2 3 3 0.86952 0.87264 14.486 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74116 0.76437 8.2806 2 0 Median 1.2168 1.0415 4.5836 3 0 Median 0.86428 0.83504 9.3471 3 0 Median NaN NaN NaN 0 0 Median 17608000 9851300 7756400 0 0 0 0 0 0 3962700 2296500 1666200 1296800 533400 763440 12348000 7021300 5326800 0 0 0 9493 1415 9866 47083;47084;47085;47086;47087;47088;47089;47090 46934 46934 1 FLVMDEADR DHLRSSNTFSIKKIRFLVMDEADRLLEQGC SIKKIRFLVMDEADRLLEQGCTDFTVDLEA R F L D R L 1 1 0 2 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1094.5066 Q9Y6V7 Q9Y6V7 148 156 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 2 0.0032081 66.692 By MS/MS 1 0.95897 0.95313 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95897 0.95313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7352300 4023700 3328600 0 0 0 0 0 0 7352300 4023700 3328600 0 0 0 0 0 0 0 0 0 9494 4497 9867 47091 46935;46936 46935 2 FLVPDHVNMSELIK RYKGEKQLPVLDKTKFLVPDHVNMSELIKI KFLVPDHVNMSELIKIIRYSVTFVS_____ K F L I K I 0 0 1 1 0 0 1 0 1 1 2 1 1 1 1 1 0 0 0 2 0 0 14 0 1640.8596 H3BTL1;Q9GZQ8;A6NCE7 H3BTL1 52 65 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 2;3 0.032299 25.938 By MS/MS By matching By MS/MS 1 1 1 1.0508 1.008 66.462 3 Median 2.9143 2.7453 NaN 1 0 Median 0.90785 0.78075 NaN 1 0 Median 1.0508 1.008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10403000 5223000 5179700 1330000 595440 734510 208950 114050 94896 8863800 4513500 4350300 0 0 0 0 0 0 0 0 0 9495 505 9868 47092;47093;47094 46937;46938 46937 2 FLVQNIHTLAELK LYMWLSNSPHGPSAKFLVQNIHTLAELKMT AKFLVQNIHTLAELKMTGNCLKGSRPLLSF K F L L K M 1 0 1 0 0 1 1 0 1 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1524.8664 Q8TDN6 Q8TDN6 141 153 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 0.00034487 76.228 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 7 1 1.1994 1.18 16.081 12 Median 1.8403 1.7291 NaN 1 0 Median 1.2971 1.1246 NaN 1 0 Median 1.2299 1.2752 NaN 1 0 Median 1.5963 1.3536 NaN 1 0 Median 1.099 1.155 11.843 7 0 Median 1.32 1.1268 NaN 1 0 Median 58191000 26522000 31669000 2846700 1044100 1802600 779880 347920 431970 8966400 4056100 4910300 275230 98265 176960 44990000 20832000 24158000 332680 143880 188800 9496 3473 9869 47095;47096;47097;47098;47099;47100;47101;47102;47103;47104;47105;47106 46939;46940;46941;46942;46943;46944;46945;46946;46947;46948;46949;46950 46944 12 FLVSQNVDGLHVR THMALVQLERVGLLRFLVSQNVDGLHVRSG LRFLVSQNVDGLHVRSGFPRDKLAELHGNM R F L V R S 0 1 1 1 0 1 0 1 1 0 2 0 0 1 0 1 0 0 0 3 0 0 13 0 1482.7943 Q8N6T7;M0R1N9 Q8N6T7 109 121 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 2;3 8.722E-07 130.01 By MS/MS By matching By MS/MS 3 1 1 0.88136 0.86871 7.1854 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82167 0.91482 7.7605 3 1 Plateau 0.95848 0.85095 NaN 1 0 Median 0.91334 0.96507 NaN 1 0 Median NaN NaN NaN 0 0 Median 39639000 22815000 16825000 0 0 0 0 0 0 34644000 20135000 14508000 1113900 472570 641290 3881700 2206900 1674700 0 0 0 9497 3390 9870 47107;47108;47109;47110;47111 46951;46952;46953;46954;46955 46954 5 FLVTVIK IGSISGAMHEEDEKRFLVTVIKDLLGLCEQ MHEEDEKRFLVTVIKDLLGLCEQKRGKDNK R F L I K D 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 2 0 0 7 0 818.52658 O14980 O14980 516 522 XPO1 Exportin-1 yes yes 2 0.037371 46.37 By MS/MS By matching By MS/MS By matching By matching 1 3 1 1 1 1.2996 1.1271 14.677 7 Median 1.0041 0.99342 NaN 1 0 Median 1.3135 1.1271 14.489 3 0 Median 1.2996 1.39 NaN 1 0 Median 1.1712 0.98941 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3617 1.1721 NaN 1 0 Median 10710000 4783700 5926300 3053200 1348900 1704200 4729300 2219400 2509900 2197300 882920 1314400 570580 256950 313630 0 0 0 159630 75478 84152 9498 1510 9871 47112;47113;47114;47115;47116;47117;47118 46956;46957;46958 46957 3 FLVYVANFDEKDPR ASSLMGLFEKRRFRKFLVYVANFDEKDPRT KFLVYVANFDEKDPRTFEGIDPKKTTMRDV K F L P R T 1 1 1 2 0 0 1 0 0 0 1 1 0 2 1 0 0 0 1 2 0 0 14 1 1711.857 P50395;Q5SX87;Q5SX86 P50395 143 156 GDI2 Rab GDP dissociation inhibitor beta yes no 3 0.033262 19.244 By matching By matching By MS/MS By matching 1 1 1 1 0.91606 0.88181 16.738 4 Median 0.65866 0.65774 NaN 1 0 Median 0.94265 0.86174 NaN 1 0 Median 0.89022 0.90234 NaN 1 0 Median 0.98867 0.96229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15302000 8690200 6611600 5020200 3202000 1818100 1353000 774270 578780 8690800 4596400 4094400 237910 117550 120360 0 0 0 0 0 0 9499 2411 9872 47119;47120;47121;47122 46959;46960 46959 2 FLWESYR TQDRTDRLLLTPWVKFLWESYRQCLDLLRN LLLTPWVKFLWESYRQCLDLLRNNSRVERL K F L Y R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 7 0 999.48142 Q14152 Q14152 152 158 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.015867 70.268 By MS/MS By matching By matching 1 1 1 1.1688 1.0708 9.8392 3 Median 1.1688 1.0993 NaN 1 0 Median 1.0895 0.91636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2984 1.0708 NaN 1 0 Median 10082000 4677800 5403900 8957300 4151400 4806000 1048900 492210 556660 0 0 0 0 0 0 0 0 0 75464 34225 41239 9500 2860 9873 47123;47124;47125 46961;46962 46962 2 FLYDDNQR LARLLFPPKDDHTLKFLYDDNQRVEPEWYI KDDHTLKFLYDDNQRVEPEWYIPIIPMVLI K F L Q R V 0 1 1 2 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1069.4829 P11388;Q02880;E9PCY5 P11388 828 835 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0024054 117.93 By MS/MS By MS/MS By MS/MS 1 1 4 1.2574 1.1057 16.787 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2574 1.1079 NaN 1 0 Median 1.0887 1.1057 NaN 1 0 Median 1.318 1.0711 21.964 3 1 Median 51274000 22697000 28577000 0 0 0 0 0 0 0 0 0 6578200 2746400 3831800 34367000 15889000 18478000 10328000 4061200 6266900 9501 1963;2704 9874 47126;47127;47128;47129;47130;47131 46963;46964;46965;46966;46967;46968;46969;46970 46964 8 FLYFLPASEEK KRLEEVLAIRTIHEKFLYFLPASEEKIICL IHEKFLYFLPASEEKIICLTRVFEPFTGLN K F L E K I 1 0 0 0 0 0 2 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 11 0 1342.6809 Q8NCM8;A0A3B3ISP9;A0A3B3IT36 Q8NCM8 344 354 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.00068587 89.08 By MS/MS 1 0.69743 0.69369 NaN 1 Median 0.69743 0.69369 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5271300 3049000 2222300 5271300 3049000 2222300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9502 3418 9875 47132 46971 46971 1 FLYIWPNAR GAGNYGMCGRAYSPRFLYIWPNARISVMGG RAYSPRFLYIWPNARISVMGGEQAANVLAT R F L A R I 1 1 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 9 0 1178.6237 Q9HCC0;D6RD67 Q9HCC0 461 469 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 2 0.063058 27.525 By MS/MS 1 1.0216 0.99705 NaN 1 Median 1.0216 0.99705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4531700 2056300 2475400 4531700 2056300 2475400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9503 4027 9876 47133 46972;46973 46973 2 FLYQLHETEKEDLIR ERIMGKMEADPELSKFLYQLHETEKEDLIR FLYQLHETEKEDLIREERSRRERVRQSRMD K F L I R E 0 1 0 1 0 1 3 0 1 1 3 1 0 1 0 0 1 0 1 0 0 0 15 1 1932.9945 O75643;A0A494C1A5 O75643 359 373 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3;4 9.6377E-05 66.246 By matching By MS/MS By MS/MS By matching 2 1 2 1 1.1211 1.1193 43.964 6 Median 1.2676 1.292 12.108 2 0 Median 1.5201 1.4388 NaN 1 0 Median 0.57634 0.6792 62.458 2 0 Median 1.0907 1.0529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40757000 22131000 18625000 9627500 3967900 5659600 4384800 1750800 2633900 25237000 15708000 9529500 1507400 705040 802410 0 0 0 0 0 0 9504 1688 9877 47134;47135;47136;47137;47138;47139 46974;46975;46976 46974 3 FLYQLHETEKEDLIREER ERIMGKMEADPELSKFLYQLHETEKEDLIR QLHETEKEDLIREERSRRERVRQSRMDTDL K F L E R S 0 2 0 1 0 1 5 0 1 1 3 1 0 1 0 0 1 0 1 0 0 0 18 2 2347.1808 O75643;A0A494C1A5 O75643 359 376 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3;4 3.2037E-08 89.866 By MS/MS By matching By MS/MS By matching 3 2 2 1 0.99374 1.0939 19.171 8 Median 1.0213 1.1467 17.405 3 0 Plateau 1.3423 1.5229 16.909 2 0 Median 0.91032 1.0939 1.5102 2 0 Median NaN NaN NaN 0 0 Median 0.94532 1.0816 NaN 1 0 Median NaN NaN NaN 0 0 Median 109970000 53952000 56018000 44453000 20965000 23488000 3716700 1457300 2259300 60037000 30596000 29441000 0 0 0 1762500 932690 829770 0 0 0 9505 1688 9878 47140;47141;47142;47143;47144;47145;47146;47147 46977;46978;46979;46980;46981 46979 5 FLYSELMK NDCHAEIISRRGFIRFLYSELMKYNSQTAK SRRGFIRFLYSELMKYNSQTAKDSIFEPAK R F L M K Y 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 1 0 0 1 0 0 0 8 0 1029.5205 P55265;A0A3B3IRQ9;A0A3B3ISU1 P55265 922 929 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.0069954 68.915 By matching By matching By matching By MS/MS By matching 1 3 3 4 3 1.3373 1.1887 18.445 14 Median NaN NaN NaN 0 0 Median 1.7475 1.4918 NaN 1 0 Median 0.93096 1.0188 39.157 3 0 Median 1.6431 1.4008 12.415 3 0 Median 1.1692 1.1678 4.8795 4 0 Median 1.4006 1.1946 5.7114 3 0 Median 43476000 21558000 21918000 0 0 0 136030 62107 73922 10305000 5996100 4308600 934160 388660 545500 30846000 14561000 16285000 1254900 549430 705490 9506 2498 9879 47148;47149;47150;47151;47152;47153;47154;47155;47156;47157;47158;47159;47160;47161 46982;46983;46984;46985 46985 4 FMADCPHTIGVEFGTR GVGKSCLLHQFTEKKFMADCPHTIGVEFGT MADCPHTIGVEFGTRIIEVSGQKIKLQIWD K F M T R I 1 1 0 1 1 0 1 2 1 1 0 0 1 2 1 0 2 0 0 1 0 0 16 0 1836.8287 P61106;X6RFL8 P61106 36 51 RAB14 Ras-related protein Rab-14 yes no 3 0.0023307 28.58 By MS/MS 1 1.0132 0.85836 NaN 1 Median NaN NaN NaN 0 0 Median 1.0132 0.85836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2835300 1397100 1438200 0 0 0 2835300 1397100 1438200 0 0 0 0 0 0 0 0 0 0 0 0 9507 2545 9880 47162 46986 46986 1 FMATLGPEEEAEK LNRELTSRVTAHWEKFMATLGPEEEAEKAQ EKFMATLGPEEEAEKAQADFVKSAVRDVRY K F M E K A 2 0 0 0 0 0 4 1 0 0 1 1 1 1 1 0 1 0 0 0 0 0 13 0 1450.665 Q9UFC0;H7C5S6 Q9UFC0 152 164 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 9.7133E-07 99.568 By matching By matching By MS/MS By MS/MS 1 2 2 1 0.896 0.86325 15.74 5 Median 0.67002 0.66128 NaN 1 0 Median 0.99957 0.83407 NaN 1 0 Median 0.8501 0.91839 8.7557 2 0 Median 1.1286 0.96499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21183000 11150000 10033000 5539600 3122000 2417600 2784900 1557500 1227400 11362000 5841300 5520300 1497100 629580 867520 0 0 0 0 0 0 9508 4258 9881;9882 47163;47164;47165;47166;47167;47168 46987;46988;46989;46990 46988 1908 4 FMATNDLMTELQK SNLLEKMTSSDKDFRFMATNDLMTELQKDS FRFMATNDLMTELQKDSIKLDDDSERKVVK R F M Q K D 1 0 1 1 0 1 1 0 0 0 2 1 2 1 0 0 2 0 0 0 0 0 13 0 1540.7266 Q86VP6 Q86VP6 24 36 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 1.3462E-05 95.81 By MS/MS By matching By MS/MS By matching By matching 4 3 3 3 1 1.1177 1.0182 47.112 14 Median 0.64676 0.6277 73.93 4 0 Median 1.209 1.0253 1.2922 3 0 Plateau 1.0129 1.0788 3.8234 3 0 Median 1.2152 1.0593 3.8288 3 0 Plateau NaN NaN NaN 0 0 Median 1.195 1.0028 NaN 1 0 Median 101460000 50856000 50601000 37990000 20073000 17916000 9595900 4304300 5291600 48278000 24013000 24265000 4769900 2108000 2661900 0 0 0 823140 357030 466110 9509 3288 9883;9884 47169;47170;47171;47172;47173;47174;47175;47176;47177;47178;47179;47180;47181;47182 46991;46992;46993;46994;46995;46996;46997;46998 46998 1702;1703 8 FMATNDLMTELQKDSIK SNLLEKMTSSDKDFRFMATNDLMTELQKDS ATNDLMTELQKDSIKLDDDSERKVVKMILK R F M I K L 1 0 1 2 0 1 1 0 0 1 2 2 2 1 0 1 2 0 0 0 0 0 17 1 1983.9645 Q86VP6 Q86VP6 24 40 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 0.026623 16.685 By MS/MS By matching 1 1 1.2846 1.4119 18.352 2 Median 1.1714 1.2401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4087 1.6076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2568200 1058100 1510100 1561500 642550 918930 0 0 0 1006700 415540 591190 0 0 0 0 0 0 0 0 0 9510 3288 9885 47183;47184 46999 46999 1 FMDASALTGIPLPLIK KLYLVFEFLHQDLKKFMDASALTGIPLPLI MDASALTGIPLPLIKSYLFQLLQGLAFCHS K F M I K S 2 0 0 1 0 0 0 1 0 2 3 1 1 1 2 1 1 0 0 0 0 0 16 0 1685.9426 G3V5T9;P24941;E7ESI2 G3V5T9 90 105 CDK2 Cyclin-dependent kinase 2 yes no 2 0.022931 25.437 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 0.82973 0.71733 35.603 5 Median NaN NaN NaN 0 0 Median 0.82973 0.69924 NaN 1 0 Median 0.82601 0.80264 NaN 1 0 Median 0.65926 0.54686 NaN 1 0 Median 1.4422 1.4242 NaN 1 0 Median 0.87604 0.71733 NaN 1 0 Median 3781000 2038700 1742300 0 0 0 1953200 1093500 859770 1344200 731920 612230 67009 28785 38224 158310 51016 107290 258270 133510 124760 9511 1120 9886 47185;47186;47187;47188;47189 47000;47001 47000 2 FMDMFPDASLIR AVHDVLDLYLWLSYRFMDMFPDASLIRDLQ SYRFMDMFPDASLIRDLQKELDGIIQDGVH R F M I R D 1 1 0 2 0 0 0 0 0 1 1 0 2 2 1 1 0 0 0 0 0 0 12 0 1441.6734 Q8IYB8 Q8IYB8 645 656 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.00063696 63.283 By MS/MS By MS/MS 1 1 0.86415 0.88921 28.626 2 Median 1.0979 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68019 0.72627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3755000 1843300 1911700 1490100 587620 902520 0 0 0 2264900 1255700 1009200 0 0 0 0 0 0 0 0 0 9512 3342 9887 47190;47191 47002;47003;47004;47005 47004 4 FMDQHPEMDFSK LPTSDEQKKQEILKKFMDQHPEMDFSKAKF LKKFMDQHPEMDFSKAKFN___________ K F M S K A 0 0 0 2 0 1 1 0 1 0 0 1 2 2 1 1 0 0 0 0 0 0 12 0 1510.6221 Q9Y266 Q9Y266 316 327 NUDC Nuclear migration protein nudC yes yes 2;3 7.6989E-05 104.82 By MS/MS By matching By matching By matching 4 1 2 1 1.1062 1.0354 20.315 8 Median 1.3127 1.2346 20.205 4 2 Median 1.0949 0.94094 NaN 1 0 Median 1.0887 1.1014 19.992 2 0 Median 1.0379 0.87455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90540000 38992000 51547000 69175000 29585000 39590000 3552900 1619800 1933100 16870000 7243700 9626600 942070 544220 397850 0 0 0 0 0 0 9513 4376 9888 47192;47193;47194;47195;47196;47197;47198;47199 47006;47007;47008;47009 47008 4 FMELLEPLNER STDEVDSKRLTVQTKFMELLEPLNERKHNL VQTKFMELLEPLNERKHNLLASKEIHQFNR K F M E R K 0 1 1 0 0 0 3 0 0 0 3 0 1 1 1 0 0 0 0 0 0 0 11 0 1389.6962 Q01082;A0A087WUZ3 Q01082 1467 1477 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.4909E-27 155.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.0115 0.89644 7.9364 6 Median 1.0569 0.99391 NaN 1 0 Median 1.0641 0.89644 3.3387 2 0 Median 0.75566 0.82362 NaN 1 0 Median 0.97513 0.85942 NaN 1 0 Median 0.95216 1.0002 NaN 1 0 Median NaN NaN NaN 0 0 Median 41068000 21304000 19764000 9063500 4213900 4849600 9707000 4679300 5027700 18118000 9959500 8158700 1074000 520800 553200 3105200 1930800 1174400 0 0 0 9514 2681 9889;9890 47200;47201;47202;47203;47204;47205;47206 47010;47011;47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023 47023 1369 14 FMELLEPLNERK STDEVDSKRLTVQTKFMELLEPLNERKHNL QTKFMELLEPLNERKHNLLASKEIHQFNRD K F M R K H 0 1 1 0 0 0 3 0 0 0 3 1 1 1 1 0 0 0 0 0 0 0 12 1 1517.7912 Q01082;A0A087WUZ3 Q01082 1467 1478 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.026811 20.663 By MS/MS 1 0.75528 0.89883 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75528 0.89883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2207700 1304600 903130 0 0 0 0 0 0 2207700 1304600 903130 0 0 0 0 0 0 0 0 0 9515 2681 9891 47207 47024;47025 47025 2 FMELNLAQK DTVLKKLDEQYQKYKFMELNLAQKKRRLKG QYQKYKFMELNLAQKKRRLKGQIPEIKQTL K F M Q K K 1 0 1 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1092.5638 P61758 P61758 62 70 VBP1 Prefoldin subunit 3 yes yes 2 0.0020102 75.189 By MS/MS By matching 1 1 0.93787 0.96087 13.896 2 Median 1.1472 1.0601 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76673 0.87095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45510000 20303000 25207000 44415000 19765000 24650000 0 0 0 1095000 537990 557040 0 0 0 0 0 0 0 0 0 9516 2561 9892 47208;47209 47026;47027 47027 2 FMELNLAQKK DTVLKKLDEQYQKYKFMELNLAQKKRRLKG YQKYKFMELNLAQKKRRLKGQIPEIKQTLE K F M K K R 1 0 1 0 0 1 1 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 10 1 1220.6587 P61758 P61758 62 71 VBP1 Prefoldin subunit 3 yes yes 3 0.0010268 53.683 By MS/MS 1 1.2893 1.3118 NaN 1 Median 1.2893 1.3118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6570100 2886400 3683700 6570100 2886400 3683700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9517 2561 9893 47210 47028;47029 47029 2 FMEPVTMQESGTFAFR TVKGSSLHVGSDLLKFMEPVTMQESGTFAF MEPVTMQESGTFAFRTPKLSHDANETLPLH K F M F R T 1 1 0 0 0 1 2 1 0 0 0 0 2 3 1 1 2 0 0 1 0 0 16 0 1876.8488 O15031;H0Y7X5 O15031 709 724 PLXNB2 Plexin-B2 yes no 2 9.7142E-05 66.289 By MS/MS 1 0.67363 0.67599 NaN 1 Median 0.67363 0.67599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1927000 1150200 776820 1927000 1150200 776820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9518 1514 9894 47211 47030 47030 1 FMEPYIFGSR DARVHLGHKAGCRHRFMEPYIFGSRLDHDI GCRHRFMEPYIFGSRLDHDIIDLEQTATHL R F M S R L 0 1 0 0 0 0 1 1 0 1 0 0 1 2 1 1 0 0 1 0 0 0 10 0 1245.5852 Q9Y399 Q9Y399 101 110 MRPS2 28S ribosomal protein S2, mitochondrial no no 2 0.0079033 47.198 By MS/MS By MS/MS 2 1 0.89387 0.85204 9.71 3 Median 0.89313 0.84984 0.36606 2 0 Median 1.1869 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18191000 9238100 8952900 15294000 7981000 7313400 2896600 1257100 1639500 0 0 0 0 0 0 0 0 0 0 0 0 9519 4409 9895 47212;47213;47214 47031;47032;47033;47034;47035 47033 5 FMEQVIFK PIRHGIVEDWDLMERFMEQVIFKYLRAEPE DWDLMERFMEQVIFKYLRAEPEDHYFLLTE R F M F K Y 0 0 0 0 0 1 1 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 8 0 1040.5365 B4DXW1;P61158;F8WDR7 B4DXW1 41 48 ACTR3 Actin-related protein 3 yes no 2 0.011113 57.559 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.1926 1.0774 9.0975 6 Median 1.021 0.94062 NaN 1 0 Median 1.2662 1.0807 10.98 2 0 Median 1.0652 1.0243 NaN 1 0 Median 1.2671 1.1333 NaN 1 0 Median 1.2163 1.1656 NaN 1 0 Median NaN NaN NaN 0 0 Median 80330000 37047000 43283000 30200000 14824000 15376000 23451000 10207000 13244000 20967000 9684100 11283000 3739100 1646800 2092400 1971900 685350 1286500 0 0 0 9520 607 9896 47215;47216;47217;47218;47219;47220 47036;47037;47038 47037 3 FMERDPDELR SDETLLEDAIEVCKKFMERDPDELRFNAIA EVCKKFMERDPDELRFNAIALSAA______ K F M L R F 0 2 0 2 0 0 2 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 10 1 1306.5976 P15374;A0A087WTB8;Q5TBK7 P15374 212 221 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.001594 51.276 By matching By MS/MS 1 1 1.0252 0.9768 18.627 2 Median 1.0424 1.1143 NaN 1 0 Median 1.0082 0.85625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9314100 4403400 4910700 5000800 2371000 2629800 4313300 2032400 2280900 0 0 0 0 0 0 0 0 0 0 0 0 9521 2017 9897 47221;47222 47039 47039 1 FMETADSTTAAVLQGK RQKSSLEATREMVTRFMETADSTTAAVLQG METADSTTAAVLQGKLAEVSQRFEQLCLQQ R F M G K L 3 0 0 1 0 1 1 1 0 0 1 1 1 1 0 1 3 0 0 1 0 0 16 0 1668.8029 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4174 4189 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 9.0517E-10 129.84 By MS/MS By MS/MS 1 2 0.98767 0.99872 49.051 3 Median 0.98767 0.99136 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4478 1.5245 59.812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44796000 21938000 22858000 32038000 15895000 16143000 0 0 0 12758000 6043100 6715200 0 0 0 0 0 0 0 0 0 9522 1220 9898 47223;47224;47225 47040;47041;47042;47043 47042 4 FMETATESLAK PDCPSTSPYDLSNPRFMETATESLAKYNSE SNPRFMETATESLAKYNSESPSKQYSLVKI R F M A K Y 2 0 0 0 0 0 2 0 0 0 1 1 1 1 0 1 2 0 0 0 0 0 11 0 1226.5853 CON__Q58D62 CON__Q58D62 168 178 yes yes 2 0.0020908 78.556 By MS/MS By MS/MS 2 1 0.17769 0.16392 13.595 3 Plateau 0.15246 0.14315 19.161 2 2 Median 0.16463 0.14041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30943000 26547000 4395500 27258000 23048000 4209900 3684600 3499100 185530 0 0 0 0 0 0 0 0 0 0 0 0 + 9523 784 9899;9900 47226;47227;47228 47044;47045;47046 47045 294 3 FMETTDPSTASSLQAK GRQSSINAMNEKVKKFMETTDPSTASSLQA METTDPSTASSLQAKMKDLSARFSEASHKH K F M A K M 2 0 0 1 0 1 1 0 0 0 1 1 1 1 1 3 3 0 0 0 0 0 16 0 1712.7927 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7 E9PHM6 2138 2153 DST Dystonin yes no 2 8.5098E-05 74.611 By MS/MS By matching By MS/MS 1 1 1 1.0219 1.0164 9.603 3 Median 1.0795 1.0743 NaN 1 1 Median 1.0219 0.89109 NaN 1 0 Median 0.94501 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15103000 7064700 8038400 5479100 2897700 2581400 4304200 1895500 2408700 5319800 2271400 3048400 0 0 0 0 0 0 0 0 0 9524 934 9901 47229;47230;47231 47047;47048 47048 2 FMGTELNGK QATASMKDGKWERKKFMGTELNGKTLGILG KWERKKFMGTELNGKTLGILGLGRIGREVA K F M G K T 0 0 1 0 0 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 9 0 995.47462 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YF78;A0A286YFE1 A0A286YF22 138 146 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0005553 114.78 By MS/MS By MS/MS 2 2 1.4551 1.2987 4.1168 4 Median 1.3158 1.2726 3.0853 2 0 Median 1.5662 1.3359 4.2121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20754000 8965500 11789000 12195000 5416600 6777900 8559800 3548900 5010900 0 0 0 0 0 0 0 0 0 0 0 0 9525 351 9902 47232;47233;47234;47235 47049;47050;47051;47052 47049 4 FMKALSYASLDK TMKANSFESRLTPSRFMKALSYASLDKEDL PSRFMKALSYASLDKEDLLSPINQNTLQRS R F M D K E 2 0 0 1 0 0 0 0 0 0 2 2 1 1 0 2 0 0 1 0 0 0 12 1 1372.7061 Q6R327 Q6R327 1380 1391 RICTOR Rapamycin-insensitive companion of mTOR yes yes 2 0.021095 43.512 By MS/MS By matching 1 2 1.2434 1.2428 55.039 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9114 2 NaN 1 0 Median 0.87182 0.91074 43.967 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12085000 5610100 6475100 0 0 0 0 0 0 8826300 3613800 5212400 3258900 1996300 1262600 0 0 0 0 0 0 9526 3179 9903 47236;47237;47238 47053 47053 1 FMLFATQNPPGLYGGR LLVTETQEVVKAHPRFMLFATQNPPGLYGG MLFATQNPPGLYGGRKVLSRAFRNRFVELH R F M G R K 1 1 1 0 0 1 0 3 0 0 2 0 1 2 2 0 1 0 1 0 0 0 16 0 1767.8767 Q9NU22;Q5T795 Q9NU22 1189 1204 MDN1 Midasin yes no 2 6.9245E-05 80.763 By MS/MS By MS/MS 1 1 0.82489 0.8573 15.74 2 Median 0.75658 0.76701 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.89938 0.95823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9283700 4459800 4823900 2685000 1434100 1250900 0 0 0 6598700 3025700 3573000 0 0 0 0 0 0 0 0 0 9527 4112 9904;9905 47239;47240 47054;47055;47056 47055 1880 3 FMLGKQEVIR GKKFDSSRDRNKPFKFMLGKQEVIRGWEEG NKPFKFMLGKQEVIRGWEEGVAQMSVGQRA K F M I R G 0 1 0 0 0 1 1 1 0 1 1 1 1 1 0 0 0 0 0 1 0 0 10 1 1219.6747 P62942;Q5W0X3;A0A087WZM5;Q1JUQ5;Q5VVH2 P62942 49 58 FKBP1A;FKBP12-Exip2;FKBP1C Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase yes no 2;3 0.00012444 121.73 By MS/MS By MS/MS 4 4 1.3187 1.2254 29.569 8 Median 1.2575 1.2331 35.963 4 0 Median 1.3812 1.2195 25.493 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102850000 42622000 60232000 58765000 26549000 32216000 44088000 16073000 28016000 0 0 0 0 0 0 0 0 0 0 0 0 9528 2612 9906;9907 47241;47242;47243;47244;47245;47246;47247;47248 47057;47058;47059;47060;47061;47062;47063;47064;47065;47066;47067;47068;47069;47070 47062 1275 14 FMLLFSR ______________________________ ______________________________ R F M S R Q 0 1 0 0 0 0 0 0 0 0 2 0 1 2 0 1 0 0 0 0 0 0 7 0 912.48914 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 3 9 AP1S1 AP-1 complex subunit sigma-1A yes no 2 0.022813 57.463 By matching By MS/MS 1 1 1.3336 1.3368 28.975 2 Median 1.6565 1.6408 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0736 1.0892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2269100 1051700 1217500 606490 218160 388330 0 0 0 1662600 833500 829140 0 0 0 0 0 0 0 0 0 9529 403 9908 47249;47250 47071 47071 1 FMLQDVLDLR MEKIIKEKKTSSRIRFMLQDVLDLRGSNWV SSRIRFMLQDVLDLRGSNWVPRRGDQGPKT R F M L R G 0 1 0 2 0 1 0 0 0 0 3 0 1 1 0 0 0 0 0 1 0 0 10 0 1248.6536 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 814 823 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.01267 41.029 By matching By MS/MS By matching 1 5 1 1.5179 1.3043 35.501 7 Median 1.2263 1.2196 NaN 1 0 Median 1.5571 1.3492 42.558 5 0 Median NaN NaN NaN 0 0 Median 1.5179 1.3043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27018000 12586000 14432000 2434400 1112400 1322000 24110000 11331000 12780000 0 0 0 472940 142660 330280 0 0 0 0 0 0 9530 894 9909 47251;47252;47253;47254;47255;47256;47257 47072 47072 1 FMNAVFFLLPK CLNKVTKSFPPLADRFMNAVFFLLPKFHGV LADRFMNAVFFLLPKFHGVLKTLCLEVVLC R F M P K F 1 0 1 0 0 0 0 0 0 0 2 1 1 3 1 0 0 0 0 1 0 0 11 0 1325.7206 P78527 P78527 2378 2388 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00071305 69.825 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 0.81219 0.84663 21.147 11 Median 0.84567 0.84536 5.2383 3 0 Median 0.6687 0.65615 37.451 3 0 Median 0.79854 0.85758 2.7138 3 0 Plateau 1.1879 1.1102 NaN 1 0 Median 0.86387 0.89993 NaN 1 0 Median NaN NaN NaN 0 0 Median 28506000 15619000 12887000 15084000 8531500 6552300 4205700 1939500 2266200 8269900 4665500 3604400 89265 34193 55073 857140 448280 408860 0 0 0 9531 2647 9910;9911 47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268 47073;47074;47075;47076;47077 47076 1316 5 FMNLANHHAMWNSR CSLASDLSQPDLVYKFMNLANHHAMWNSRK KFMNLANHHAMWNSRKGAAFGFNVIATRAG K F M S R K 2 1 3 0 0 0 0 0 2 0 1 0 2 1 0 1 0 1 0 0 0 0 14 0 1727.7773 Q5VYK3;J3KN16 Q5VYK3 1085 1098 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3;4 1.014E-05 85.42 By MS/MS By MS/MS 2 2 1.1929 1.0649 6.1781 4 Median 1.0708 1.0068 5.9369 2 0 Median 1.3038 1.0974 2.2376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27951000 13158000 14792000 23512000 11203000 12309000 4438400 1954900 2483500 0 0 0 0 0 0 0 0 0 0 0 0 9532 3116 9912 47269;47270;47271;47272 47078;47079;47080;47081 47081 4 FMNPFNMPNLYQK KEGLQNMEARLAERKFMNPFNMPNLYQKLE RKFMNPFNMPNLYQKLESDPRTRTLLSDPT K F M Q K L 0 0 3 0 0 1 0 0 0 0 1 1 2 2 2 0 0 0 1 0 0 0 13 0 1642.7636 P31948;F5H783 P31948 124 136 STIP1 Stress-induced-phosphoprotein 1 yes no 2 7.9622E-05 85.731 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.93844 0.83965 26.615 6 Median 0.70746 0.68697 33.712 2 0 Median 0.88682 0.74672 NaN 1 0 Median 1.0376 1.0857 11.423 2 0 Median 0.94047 0.80859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43801000 21862000 21939000 30564000 15364000 15200000 7342400 3662700 3679600 5100000 2430800 2669200 794570 404850 389720 0 0 0 0 0 0 9533 2212 9913 47273;47274;47275;47276;47277;47278 47082;47083;47084;47085;47086 47082 5 FMQASEDLLK IKRFEQKGFRLVGLKFMQASEDLLKEHYVD LVGLKFMQASEDLLKEHYVDLKDRPFFAGL K F M L K E 1 0 0 1 0 1 1 0 0 0 2 1 1 1 0 1 0 0 0 0 0 0 10 0 1180.5798 P15531;Q32Q12;J3KPD9;E7ERL0;E5RHP0 Q32Q12 65 74 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase no no 2 0.00036244 113.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 1.2526 1.0996 4.2725 10 Median 1.2246 1.1471 2.8564 2 0 Median 1.2934 1.0912 3.5465 4 0 Median 1.1628 1.1074 4.559 2 0 Median 1.2931 1.0513 3.9962 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 527690000 225520000 302170000 284090000 121040000 163050000 195520000 83919000 111600000 44885000 19127000 25759000 3192900 1431600 1761200 0 0 0 0 0 0 9534 3008;2018 9914;9915 47279;47280;47281;47282;47283;47284;47285;47286;47287;47288 47087;47088;47089;47090;47091;47092;47093;47094;47095;47096;47097;47098;47099;47100 47098 803 14 FMQASEDLLKEHYVDLK IKRFEQKGFRLVGLKFMQASEDLLKEHYVD QASEDLLKEHYVDLKDRPFFAGLVKYMHSG K F M L K D 1 0 0 2 0 1 2 0 1 0 3 2 1 1 0 1 0 0 1 1 0 0 17 1 2065.019 P15531;Q32Q12;J3KPD9;E7ERL0;E5RHP0 Q32Q12 65 81 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase no no 3 1.0491E-05 51.265 By MS/MS By matching By MS/MS 1 1 1 1.1643 1.1781 10.277 3 Median 1.1398 1.1416 NaN 1 0 Median 1.564 1.3828 NaN 1 0 Median 1.1643 1.1781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18254000 7623700 10630000 4856700 2146000 2710700 1921300 704940 1216400 11476000 4772700 6703000 0 0 0 0 0 0 0 0 0 9535 3008;2018 9916 47289;47290;47291 47101;47102;47103;47104 47104 4 FMQDASDVMQLLLK IECISLIGLAVGKEKFMQDASDVMQLLLKT KFMQDASDVMQLLLKTQTDFNDMEDDDPQI K F M L K T 1 0 0 2 0 2 0 0 0 0 3 1 2 1 0 1 0 0 0 1 0 0 14 0 1637.8157 O00410;H0Y8C6 O00410 573 586 IPO5 Importin-5 yes no 2 0.00084507 58.37 By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 1.1923 1.1198 36.278 8 Median 1.1533 1.1198 1.7089 2 0 Median 0.91716 0.7983 1.2164 2 0 Median 1.4194 1.501 4.6957 2 0 Median 1.2231 1.0814 NaN 1 0 Median 2.3136 2.3756 NaN 1 0 Median NaN NaN NaN 0 0 Median 13891000 6334600 7556000 7085100 3161200 3923900 4851100 2448600 2402500 1106100 450240 655900 93567 40241 53326 754780 234320 520470 0 0 0 9536 1460 9917 47292;47293;47294;47295;47296;47297;47298;47299 47105;47106;47107 47107 3 FMQDPMEIFVDDETK FSATLSKEIRPVCRKFMQDPMEIFVDDETK FMQDPMEIFVDDETKLTLHGLQQYYVKLKD K F M T K L 0 0 0 3 0 1 2 0 0 1 0 1 2 2 1 0 1 0 0 1 0 0 15 0 1843.8008 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;H0YCC6 Q13838 242 256 DDX39B Spliceosome RNA helicase DDX39B yes no 2 6.8155E-06 88.338 By matching By matching By MS/MS By matching By matching 1 1 7 4 1 0.92629 0.8945 8.9961 14 Median 1.126 1.1187 NaN 1 0 Median 1.126 1.0007 NaN 1 0 Median 0.90083 0.87954 2.7713 7 0 Median 1.1153 0.99505 4.6395 4 0 Median 0.89654 0.86328 NaN 1 0 Median NaN NaN NaN 0 0 Median 106090000 54663000 51429000 245000 74005 171000 536600 197300 339310 100050000 51841000 48209000 4032900 1965600 2067200 1226800 584940 641870 0 0 0 9537 2842 9918;9919;9920 47300;47301;47302;47303;47304;47305;47306;47307;47308;47309;47310;47311;47312;47313 47108;47109;47110;47111;47112;47113;47114;47115;47116;47117;47118;47119;47120;47121 47112 1523;1524 14 FMQDPMEVFVDDETK FSATLSKDIRPVCRKFMQDPMEVFVDDETK FMQDPMEVFVDDETKLTLHGLQQYYVKLKD K F M T K L 0 0 0 3 0 1 2 0 0 0 0 1 2 2 1 0 1 0 0 2 0 0 15 0 1829.7852 O00148 O00148 241 255 DDX39A ATP-dependent RNA helicase DDX39A yes yes 2 0.00014075 78.096 By MS/MS By matching 5 2 0.83471 0.81271 19.907 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83471 0.81696 10.44 5 2 Median 0.7076 0.62984 26.985 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19836000 11132000 8703900 0 0 0 0 0 0 19591000 11022000 8569300 245380 110800 134570 0 0 0 0 0 0 9538 1441 9921;9922;9923 47314;47315;47316;47317;47318;47319;47320 47122;47123;47124;47125;47126;47127 47126 459;460 6 FMQTFVLAPEGSVANK QVMGLLSNNNQALRRFMQTFVLAPEGSVAN MQTFVLAPEGSVANKFYVHNDIFRYQDEVF R F M N K F 2 0 1 0 0 1 1 1 0 0 1 1 1 2 1 1 1 0 0 2 0 0 16 0 1737.876 Q13283;E5RIZ6 Q13283 108 123 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2 1.3954E-06 90.614 By MS/MS By matching By MS/MS By matching By MS/MS 8 2 4 4 1 0.95868 0.85344 13.588 19 Median 1.0055 0.95897 10.337 8 2 Median 0.91107 0.79044 9.6444 2 0 Median 0.90639 0.88688 6.2874 4 0 Median 0.97273 0.80563 10.263 4 0 Median 1.2516 1.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median 144180000 70996000 73181000 82598000 39738000 42860000 5659900 2937800 2722100 47556000 24415000 23141000 4451800 2156700 2295100 3911300 1749200 2162200 0 0 0 9539 2803 9924;9925 47321;47322;47323;47324;47325;47326;47327;47328;47329;47330;47331;47332;47333;47334;47335;47336;47337;47338;47339 47128;47129;47130;47131;47132;47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143 47137 1504 16 FMQTFVLAPEGSVPNK QVMGLLSNSGQPERKFMQTFVLAPEGSVPN MQTFVLAPEGSVPNKFYVHNDMFRYEDEVF K F M N K F 1 0 1 0 0 1 1 1 0 0 1 1 1 2 2 1 1 0 0 2 0 0 16 0 1763.8916 Q9UN86;D6RAC7;D6RB17;D6RGJ4 Q9UN86 108 123 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 2 0.0050634 47.559 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9540 4341 9926 47340 47144 47144 1 FMSAYEQR IDYPEIAEGIMPRHRFMSAYEQRIEPPDRR GIMPRHRFMSAYEQRIEPPDRRWQYLLMAA R F M Q R I 1 1 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 8 0 1030.4542 Q15428 Q15428 151 158 SF3A2 Splicing factor 3A subunit 2 yes yes 2 0.0023085 114.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 4 1 1.0971 1.0568 14.722 11 Median 1.0983 1.0516 NaN 1 0 Median 1.2198 1.0595 0.3627 2 0 Median 1.0591 1.0584 NaN 1 0 Median 1.4112 1.1936 33.699 2 0 Median 1.1506 1.2082 12.319 4 0 Linear 1.0745 0.9235 NaN 1 0 Median 65496000 31154000 34342000 8314900 4272600 4042300 13368000 6074900 7293400 12236000 5846100 6390200 5738200 2806500 2931600 20409000 9580700 10828000 5429600 2573700 2856000 9541 2953 9927 47341;47342;47343;47344;47345;47346;47347;47348;47349;47350;47351 47145;47146;47147;47148;47149;47150;47151;47152;47153;47154 47154 10 FMSVQRPGPYDR SSQEEVRSYSDPPLKFMSVQRPGPYDRPGT PLKFMSVQRPGPYDRPGTARRYIGIVKQAG K F M D R P 0 2 0 1 0 1 0 1 0 0 0 0 1 1 2 1 0 0 1 1 0 0 12 1 1451.698 P52597 P52597 201 212 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3 0.0014269 43.502 By MS/MS By matching 1 1 0.66788 0.67118 3.1131 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60641 0.65657 NaN 1 0 Median 0.73557 0.68612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13114000 7349100 5764800 0 0 0 0 0 0 7223600 4094500 3129100 5890300 3254500 2635700 0 0 0 0 0 0 9542 2452 9928 47352;47353 47155 47155 1 FMSVQRPGPYDRPGTAR SSQEEVRSYSDPPLKFMSVQRPGPYDRPGT SVQRPGPYDRPGTARRYIGIVKQAGLERMR K F M A R R 1 3 0 1 0 1 0 2 0 0 0 0 1 1 3 1 1 0 1 1 0 0 17 2 1933.9581 P52597 P52597 201 217 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3;4 3.1667E-14 112.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 8 8 9 14 11 0.72536 0.80121 14.672 60 Median 0.66122 0.80121 13.918 10 0 Median 0.80497 0.83785 11.581 8 1 Median 0.60493 0.71963 10.712 8 0 Median 0.82821 0.91958 14.248 9 0 Median 0.59588 0.76953 16.88 14 0 Median 0.79999 0.81778 8.7137 11 0 Median 1918800000 1145400000 773370000 120730000 71120000 49613000 37244000 19946000 17298000 397040000 245510000 151530000 384600000 212400000 172200000 901030000 553270000 347760000 78162000 43189000 34973000 9543 2452 9929;9930 47354;47355;47356;47357;47358;47359;47360;47361;47362;47363;47364;47365;47366;47367;47368;47369;47370;47371;47372;47373;47374;47375;47376;47377;47378;47379;47380;47381;47382;47383;47384;47385;47386;47387;47388;47389;47390;47391;47392;47393;47394;47395;47396;47397;47398;47399;47400;47401;47402;47403;47404;47405;47406;47407;47408;47409;47410;47411;47412;47413 47156;47157;47158;47159;47160;47161;47162;47163;47164;47165;47166;47167;47168;47169;47170;47171;47172;47173;47174;47175;47176;47177;47178;47179;47180;47181;47182;47183;47184;47185;47186;47187;47188;47189;47190;47191;47192;47193;47194;47195;47196;47197;47198;47199;47200;47201;47202;47203;47204;47205;47206;47207;47208;47209;47210;47211;47212;47213;47214;47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225;47226;47227;47228;47229;47230 47165 1145 73 FMTDPIR ISATLPHEILEMTNKFMTDPIRILVKRDEL EILEMTNKFMTDPIRILVKRDELTLEGIKQ K F M I R I 0 1 0 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 7 0 878.43202 P38919;I3L3H2 P38919 232 238 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0073411 89.673 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 4 4 1.0903 1.0312 12.588 18 Median 1.1963 1.1622 12.003 2 0 Median 1.1777 1.0123 4.7437 2 0 Median 1.0778 1.0815 7.4703 3 0 Median 1.0761 0.92393 14.881 3 0 Median 1.0862 1.0219 4.3135 4 0 Linear 1.2529 1.0782 15.692 4 0 Median 184840000 88312000 96529000 17654000 7964300 9690000 13786000 6199700 7586700 36478000 17345000 19133000 64415000 30959000 33456000 40973000 20669000 20304000 11535000 5175700 6358900 9544 2278 9931;9932 47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425;47426;47427;47428;47429;47430;47431 47231;47232;47233;47234;47235;47236;47237;47238;47239;47240;47241;47242;47243;47244;47245 47232 1033 15 FMTTAMYDAR SKPRKLVNTINPGARFMTTAMYDAREAIIP NPGARFMTTAMYDAREAIIPGSVYDRSSQG R F M A R E 2 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 2 0 1 0 0 0 10 0 1205.5209 Q92900 Q92900 940 949 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00057276 98.033 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.1147 1.1061 19.909 7 Median 1.2937 1.2449 NaN 1 0 Median 0.94965 0.82591 5.2583 2 0 Median 1.1265 1.2224 14.137 2 0 Median 1.1147 0.94729 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4034 1.182 NaN 1 0 Median 45139000 20290000 24848000 22214000 9598800 12616000 7202900 3680800 3522000 11437000 5132400 6304400 4061400 1769900 2291500 0 0 0 223120 108300 114820 9545 3564 9933 47432;47433;47434;47435;47436;47437;47438 47246;47247;47248;47249;47250;47251 47251 5 FMYDPQTDQNIK KFLTLPPVLHLQLMRFMYDPQTDQNIKIND LMRFMYDPQTDQNIKINDRFEFPEQLPLDE R F M I K I 0 0 1 2 0 2 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 0 12 0 1498.6762 Q93009;H3BND8;F5H2X1 Q93009 409 420 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 4.2017E-06 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 2 1.0909 1.0125 29.205 9 Median 1.2353 1.1935 NaN 1 0 Median 1.0909 0.9308 NaN 1 0 Median 0.9532 1.0125 25.043 3 0 Median 0.82347 0.71396 44.274 2 1 Median 1.0858 1.1347 15.375 2 0 Median NaN NaN NaN 0 0 Median 85607000 44325000 41282000 14514000 8183700 6330300 5260400 2468800 2791600 48279000 25213000 23066000 12346000 6299600 6046400 5207100 2159500 3047600 0 0 0 9546 3574 9934;9935 47439;47440;47441;47442;47443;47444;47445;47446;47447 47252;47253;47254;47255;47256;47257;47258 47254 1784 7 FNADEFEDMVAEK GRQKIHISKKWGFTKFNADEFEDMVAEKRL TKFNADEFEDMVAEKRLIPDGCGVKYIPSR K F N E K R 2 0 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 13 0 1543.6501 F8W7C6;A0A087WV22;P27635;X1WI28 F8W7C6 125 137 RPL10 60S ribosomal protein L10 yes no 2 0.00033634 76.533 By MS/MS By matching By matching By matching 2 1 2 1 1.1575 1.0853 24.835 6 Median 1.0462 0.97143 7.7401 2 1 Median 1.11 0.93325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.354 1.49 26.04 2 0 Median 1.3802 1.1479 NaN 1 0 Median 38802000 18144000 20658000 29016000 13921000 15094000 4814000 2211600 2602400 0 0 0 0 0 0 1644900 637750 1007200 3327800 1373500 1954300 9547 1084 9936;9937 47448;47449;47450;47451;47452;47453 47259;47260;47261 47260 366 3 FNADEFEDMVAEKR GRQKIHISKKWGFTKFNADEFEDMVAEKRL KFNADEFEDMVAEKRLIPDGCGVKYIPSRG K F N K R L 2 1 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 14 1 1699.7512 F8W7C6;A0A087WV22;P27635;X1WI28 F8W7C6 125 138 RPL10 60S ribosomal protein L10 yes no 2;3 1.3306E-07 98.353 By MS/MS By MS/MS 2 2 1.0618 1.0701 5.271 4 Median 1.0573 1.103 2.2446 2 0 Median 1.0873 1.0219 4.4804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39491000 17201000 22290000 37627000 16375000 21252000 1863600 825520 1038100 0 0 0 0 0 0 0 0 0 0 0 0 9548 1084 9938 47454;47455;47456;47457 47262;47263;47264;47265;47266 47264 5 FNAHGDANTIVCNSK LGKDSNNLCLHFNPRFNAHGDANTIVCNSK FNAHGDANTIVCNSKDGGAWGTEQREAVFP R F N S K D 2 0 3 1 1 0 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 0 15 0 1646.7471 P09382 P09382 50 64 LGALS1 Galectin-1 yes yes 2;3 1.7E-14 180.09 By MS/MS By matching 2 1 1.1076 0.91012 23.885 3 Plateau NaN NaN NaN 0 0 Median 1.0645 0.876 5.4038 2 0 Median 0.57894 0.58231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34849000 16415000 18434000 0 0 0 33513000 15663000 17851000 1336000 752410 583580 0 0 0 0 0 0 0 0 0 9549 1913 9939 47458;47459;47460 47267;47268;47269;47270 47269 4 FNALFAQGNYSEAAK VRNNLAGAEELFARKFNALFAQGNYSEAAK FNALFAQGNYSEAAKVAANAPKGILRTPDT K F N A K V 4 0 2 0 0 1 1 1 0 0 1 1 0 2 0 1 0 0 1 0 0 0 15 0 1629.7787 A0A087WVQ6;Q00610 A0A087WVQ6 372 386 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 2.7277E-10 109.24 By MS/MS By matching 2 2 1.2336 1.2444 18.304 4 Linear 1.2379 1.2174 2.6469 2 0 Median 1.0782 0.97024 21.983 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34030000 15504000 18526000 29823000 13584000 16239000 4206800 1920400 2286400 0 0 0 0 0 0 0 0 0 0 0 0 9550 44 9940 47461;47462;47463;47464 47271;47272 47272 2 FNALFVRPHIR GTAKNANEMFRIFSRFNALFVRPHIRGAIR IFSRFNALFVRPHIRGAIREYQTQLIQRVK R F N I R G 1 2 1 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 0 11 1 1368.7779 Q14204 Q14204 588 598 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 5.4407E-05 112.75 By MS/MS By MS/MS By MS/MS 2 1 1 0.93722 1.0185 53.866 3 Median 0.93722 1.0185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77143 0.8478 NaN 1 0 Median 2.5005 2.3302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83139000 43736000 39403000 44231000 22661000 21570000 0 0 0 37131000 20473000 16658000 1777200 602240 1174900 0 0 0 0 0 0 9551 2865 9941 47465;47466;47467;47468 47273;47274;47275;47276;47277;47278;47279;47280 47275 8 FNAPSLLYGALR AILPKGSARVTTSVKFNAPSLLYGALRDYQ SVKFNAPSLLYGALRDYQKIGLDWLAKLYR K F N L R D 2 1 1 0 0 0 0 1 0 0 3 0 0 1 1 1 0 0 1 0 0 0 12 0 1320.719 Q96L91 Q96L91 1081 1092 EP400 E1A-binding protein p400 yes yes 2 3.7171E-06 117.89 By MS/MS By matching 2 1 0.82306 0.86986 26.455 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81072 0.87927 1.5223 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67263 0.55627 NaN 1 0 Median 9955400 5435700 4519700 0 0 0 0 0 0 9899800 5405700 4494100 0 0 0 0 0 0 55602 29967 25635 9552 3700 9942 47469;47470;47471 47281;47282;47283;47284 47283 4 FNASQLITQR LPSIVNEVLKSVVAKFNASQLITQRAQVSL SVVAKFNASQLITQRAQVSLLIRRELTERA K F N Q R A 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1176.6251 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6 J3KPX7 148 157 PHB2 Prohibitin-2 yes no 2 2.4464E-15 183.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 2 1.2798 1.1422 13.498 10 Median 1.0912 1.0367 12.389 2 0 Median 1.5299 1.2734 6.5289 3 1 Plateau 1.0625 1.0315 NaN 1 0 Median 1.4303 1.2171 19.462 2 0 Median 1.2968 1.3036 17.383 2 0 Median NaN NaN NaN 0 0 Median 582270000 272040000 310240000 442320000 212680000 229650000 87011000 34469000 52542000 33782000 17218000 16564000 5390600 2184400 3206300 13770000 5491900 8278300 0 0 0 9553 1313 9943 47472;47473;47474;47475;47476;47477;47478;47479;47480;47481 47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300;47301;47302 47286 18 FNDEDIEK YIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ QSGEWYKFNDEDIEKMEGKKLQLGIEEDLA K F N E K M 0 0 1 2 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 0 1008.44 Q86UV5;H3BLX5 Q86UV5 369 376 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.025516 42.599 By MS/MS By matching 1 1 1.0478 1.0081 2.8592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94861 1.0287 NaN 1 0 Median 1.1574 0.98796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6923800 3369600 3554200 0 0 0 0 0 0 4428000 2189900 2238100 2495800 1179700 1316100 0 0 0 0 0 0 9554 3281 9944 47482;47483 47303 47303 1 FNDEHIPDSPFVVPVASLSDDAR SYVVQEPGDYEVSIKFNDEHIPDSPFVVPV SPFVVPVASLSDDARRLTVTSLQETGLKVN K F N A R R 2 1 1 4 0 0 1 0 1 1 1 0 0 2 3 3 0 0 0 3 0 0 23 0 2526.2027 Q14315 Q14315 2387 2409 FLNC Filamin-C yes yes 3 5.2837E-16 66.383 By MS/MS By MS/MS By MS/MS 1 2 1 0.69369 0.64657 17.417 4 Median 0.73996 0.7239 NaN 1 0 Median 0.6578 0.57047 1.7302 2 0 Median 0.72557 0.80544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18046000 10359000 7686400 12566000 7652600 4913700 3804200 1963600 1840600 1675100 743020 932110 0 0 0 0 0 0 0 0 0 9555 2871 9945 47484;47485;47486;47487 47304;47305;47306;47307;47308 47305 5 FNDEHIPESPYLVPVIAPSDDAR SYIAQEPGNYEVSIKFNDEHIPESPYLVPV SPYLVPVIAPSDDARRLTVMSLQESGLKVN K F N A R R 2 1 1 3 0 0 2 0 1 2 1 0 0 1 4 2 0 0 1 2 0 0 23 0 2580.2496 O75369;E7EN95 O75369 2266 2288 FLNB Filamin-B yes no 3 2.0169E-05 49.593 By MS/MS 1 0.50843 0.4772 NaN 1 Median 0.50843 0.4772 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13514000 8019800 5494500 13514000 8019800 5494500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9556 1664 9946 47488 47309 47309 1 FNDIHVPVR LATQNRPLWQCFLGRFNDIHVPVRLESVKF QCFLGRFNDIHVPVRLESVKFASHCLMNHP R F N V R L 0 1 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 1095.5825 Q29RF7 Q29RF7 332 340 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0011471 84.743 By MS/MS By matching 1 2 0.92614 1.0183 25.387 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92614 1.0183 NaN 1 0 Median 1.0444 0.90329 34.544 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18123000 9989000 8134200 0 0 0 0 0 0 12958000 7470100 5487700 5165500 2519000 2646600 0 0 0 0 0 0 9557 3003 9947 47489;47490;47491 47310 47310 1 FNDIHVPVRLESVK LATQNRPLWQCFLGRFNDIHVPVRLESVKF RFNDIHVPVRLESVKFASHCLMNHPDLAKD R F N V K F 0 1 1 1 0 0 1 0 1 1 1 1 0 1 1 1 0 0 0 3 0 0 14 1 1651.9046 Q29RF7 Q29RF7 332 345 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.0050142 30.308 By MS/MS By matching 1 1 0.84515 0.84543 32.29 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93658 1.0623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76264 0.67285 NaN 1 0 Median 24744000 12302000 12443000 0 0 0 0 0 0 24384000 12109000 12275000 0 0 0 0 0 0 360140 192850 167290 9558 3003 9948 47492;47493 47311 47311 1 FNDILGR LYDYIDKYNIELDPRFNDILGRHSRKRWER YNIELDPRFNDILGRHSRKRWERFVHSENQ R F N G R H 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 833.43955 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A087WY74 P68400 269 275 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.0017105 110.61 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0877 1.1976 11.618 4 Linear 1.1295 1.1231 NaN 1 0 Median 1.1405 0.99429 NaN 1 0 Median 1.0475 1.1441 NaN 1 0 Median 1.0394 0.8918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35883000 16238000 19645000 8626200 3939800 4686500 6648200 3091000 3557200 16566000 7414300 9151300 4043000 1793300 2249600 0 0 0 0 0 0 9559 394 9949 47494;47495;47496;47497 47312;47313;47314;47315;47316;47317 47314 6 FNDYFEFPR LKRFDYDWERECAIKFNDYFEFPRELDMEP RECAIKFNDYFEFPRELDMEPYTVAGVAKL K F N P R E 0 1 1 1 0 0 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 9 0 1233.5455 Q93008;O00507 Q93008 1812 1820 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0049104 59.245 By MS/MS By MS/MS By matching By matching 3 1 1 1 1.0027 0.97459 11.709 6 Median 0.88087 0.89152 16.702 3 0 Median 1.086 0.92146 NaN 1 0 Median 0.9258 1.0308 NaN 1 0 Median 1.2006 1.0459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12848000 6573800 6273900 8001400 4167600 3833800 3858200 1873600 1984600 923210 495890 427320 64861 36647 28214 0 0 0 0 0 0 9560 3573 9950 47498;47499;47500;47501;47502;47503 47318;47319;47320 47320 3 FNECGHVLYADIK RNLPFDFTWKMLKDKFNECGHVLYADIKME DKFNECGHVLYADIKMENGKSKGCGVVKFE K F N I K M 1 0 1 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 1 1 0 0 13 0 1564.7344 A0A087X0X3;P52272 A0A087X0X3 673 685 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 0.06066 12.146 By MS/MS 1 0.74697 0.76569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74697 0.76569 NaN 1 0 Median NaN NaN NaN 0 0 Median 8085500 4587700 3497800 0 0 0 0 0 0 0 0 0 0 0 0 8085500 4587700 3497800 0 0 0 9561 116 9951 47504 47321 47321 1 FNEEHIPDSPFVVPVASPSGDAR AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV SPFVVPVASPSGDARRLTVSSLQESGLKVN K F N A R R 2 1 1 2 0 0 2 1 1 1 0 0 0 2 4 3 0 0 0 3 0 0 23 0 2466.1816 P21333;H0Y5C6;Q60FE5;A0A087WWY3 P21333 2311 2333 FLNA Filamin-A no no 2;3 6.6131E-28 102.21 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 2 0.55736 0.53304 20.112 12 Median 0.57396 0.54583 3.8455 4 3 Median 0.55623 0.48952 15.879 3 1 Median 0.3076 0.36607 35.131 3 0 Median 0.57287 0.50116 18.25 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192020000 127100000 64916000 132990000 87093000 45896000 33996000 21902000 12094000 23942000 17461000 6480800 1091400 645920 445520 0 0 0 0 0 0 9562 2088;3120 9952 47505;47506;47507;47508;47509;47510;47511;47512;47513;47514;47515;47516 47322;47323;47324;47325;47326;47327;47328;47329;47330;47331;47332;47333;47334 47324 13 FNEENYGVK ESDMSNGWDPNEMFKFNEENYGVKTTYDSS PNEMFKFNEENYGVKTTYDSSLSSYTVPLE K F N V K T 0 0 2 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 9 0 1098.4982 Q8WWM7;H3BUF6;H3BSK9 Q8WWM7 259 267 ATXN2L Ataxin-2-like protein yes no 2 0.0059206 70.525 By MS/MS 1 0.86239 0.7335 NaN 1 Median NaN NaN NaN 0 0 Median 0.86239 0.7335 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5835500 2829200 3006200 0 0 0 5835500 2829200 3006200 0 0 0 0 0 0 0 0 0 0 0 0 9563 3511 9953 47517 47335 47335 1 FNEVAAQYSEDK GKIMEAMEKLKSGMRFNEVAAQYSEDKARQ GMRFNEVAAQYSEDKARQGGDLGWMTRGSM R F N D K A 2 0 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 12 0 1399.6256 Q9Y237;H0Y4T6;J3KMW3;H0Y610;H0Y8P6;A0A494C021 Q9Y237 64 75 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 2 3.9018E-06 147.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.2334 1.0107 17.424 6 Median 0.77152 0.72622 NaN 1 0 Median 1.3002 1.0926 3.9132 2 0 Median 1.0253 0.96129 NaN 1 0 Median 1.1782 0.94859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4822 1.1844 NaN 1 0 Median 213420000 103150000 110260000 26038000 11841000 14197000 18451000 8032600 10418000 161640000 79853000 81792000 6957400 3291600 3665800 0 0 0 325480 136490 188990 9564 4370 9954 47518;47519;47520;47521;47522;47523 47336;47337;47338;47339;47340;47341;47342;47343;47344;47345;47346 47344 11 FNEVAAQYSEDKAR GKIMEAMEKLKSGMRFNEVAAQYSEDKARQ RFNEVAAQYSEDKARQGGDLGWMTRGSMVG R F N A R Q 3 1 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 14 1 1626.7638 Q9Y237;H0Y4T6;J3KMW3;H0Y610;H0Y8P6;A0A494C021 Q9Y237 64 77 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 2;3 1.9621E-08 145.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 5 5 5 2 1 1.0235 1.0183 18.703 21 Median 1.0393 1.0525 8.6008 4 0 Median 1.1639 1.0267 4.8617 5 0 Median 0.9593 0.98499 17.182 4 1 Median 0.95683 0.83469 21.51 5 0 Median 0.88009 0.99064 44.934 2 0 Median 0.77865 0.70829 NaN 1 0 Median 481300000 231660000 249640000 104220000 49124000 55098000 51990000 23332000 28658000 286680000 140540000 146140000 33522000 16388000 17134000 3022600 1467800 1554800 1867300 808430 1058900 9565 4370 9955 47524;47525;47526;47527;47528;47529;47530;47531;47532;47533;47534;47535;47536;47537;47538;47539;47540;47541;47542;47543;47544;47545 47347;47348;47349;47350;47351;47352;47353;47354;47355;47356;47357;47358;47359;47360;47361;47362;47363;47364;47365;47366;47367;47368;47369;47370;47371 47348 25 FNEVVSVLK DGLVKVGTLKKRLDKFNEVVSVLKDGKPEM KKRLDKFNEVVSVLKDGKPEMNKQIKNLEI K F N L K D 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 3 0 0 9 0 1033.5808 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22 A0A0A0MRM8 853 861 MYO6 Unconventional myosin-VI yes no 2 0.0049967 58.981 By MS/MS 1 2.1159 1.794 NaN 1 Median NaN NaN NaN 0 0 Median 2.1159 1.794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8023300 3173700 4849600 0 0 0 8023300 3173700 4849600 0 0 0 0 0 0 0 0 0 0 0 0 9566 164 9956 47546 47372 47372 1 FNFLAPELPAVSEFSTSETMGHSADR AKSMGQRLSLISKFRFNFLAPELPAVSEFS SEFSTSETMGHSADRLAAAFAVSRLEQDEY R F N D R L 3 1 1 1 0 0 3 1 1 0 2 0 1 3 2 4 2 0 0 1 0 0 26 0 2839.3123 P55084;F5GZQ3 P55084 204 229 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 1.6791E-08 41.763 By MS/MS By matching 1 1 0.97605 0.91502 16.044 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81406 0.81688 NaN 1 0 Median 1.1703 1.0249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5312000 2879400 2432600 0 0 0 0 0 0 5004200 2737400 2266800 307800 141960 165840 0 0 0 0 0 0 9567 2496 9957 47547;47548 47373;47374 47373 2 FNFLNPNDPYHAYYR EFEARIRQNEINNPKFNFLNPNDPYHAYYR FNFLNPNDPYHAYYRHKVSEFKEGKAQEPS K F N Y R H 1 1 3 1 0 0 0 0 1 0 1 0 0 2 2 0 0 0 3 0 0 0 15 0 1929.8798 Q15459 Q15459 81 95 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 5.3276E-05 74.678 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 6 0.7401 0.72619 14.241 16 Median 0.78665 0.76086 5.5925 2 1 Median NaN NaN NaN 0 0 Median 0.73533 0.77681 13.789 3 0 Plateau 0.86235 0.7333 19.927 5 0 Median 0.68264 0.7015 13.103 6 1 Median NaN NaN NaN 0 0 Median 92755000 51250000 41505000 11271000 6277700 4993100 0 0 0 39732000 21376000 18356000 4988200 2638900 2349300 36764000 20958000 15806000 0 0 0 9568 2954 9958 47549;47550;47551;47552;47553;47554;47555;47556;47557;47558;47559;47560;47561;47562;47563;47564 47375;47376;47377;47378;47379;47380;47381;47382;47383;47384;47385;47386;47387;47388;47389 47379 15 FNGAHIPGSPFK RFIPHENGVHSIDVKFNGAHIPGSPFKIRV DVKFNGAHIPGSPFKIRVGEQSQAGDPGLV K F N F K I 1 0 1 0 0 0 0 2 1 1 0 1 0 2 2 1 0 0 0 0 0 0 12 0 1270.6459 Q14315 Q14315 2482 2493 FLNC Filamin-C yes yes 2 0.0047583 42.743 By MS/MS By matching 1 1 1.3454 1.2476 8.2987 2 Median 1.3281 1.3229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.363 1.1765 NaN 1 0 Median 6233600 2289700 3943900 5882500 2118600 3763900 0 0 0 0 0 0 0 0 0 0 0 0 351160 171120 180040 9569 2871 9959 47565;47566 47390 47390 1 FNGSHVVGSPFK RFIPHENGVHTIDVKFNGSHVVGSPFKVRV DVKFNGSHVVGSPFKVRVGEPGQAGNPALV K F N F K V 0 0 1 0 0 0 0 2 1 0 0 1 0 2 1 2 0 0 0 2 0 0 12 0 1274.6408 O75369;E7EN95 O75369 2361 2372 FLNB Filamin-B yes no 2;3 2.0155E-15 150.44 By MS/MS 3 1.2079 1.0768 5.5058 2 Median NaN NaN NaN 0 0 Median 1.2079 1.0768 5.5058 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48802000 20492000 28309000 0 0 0 48802000 20492000 28309000 0 0 0 0 0 0 0 0 0 0 0 0 9570 1664 9960 47567;47568;47569 47391;47392;47393 47391 3 FNGTHIPGSPFK RFIPRENGVYLIDVKFNGTHIPGSPFKIRV DVKFNGTHIPGSPFKIRVGEPGHGGDPGLV K F N F K I 0 0 1 0 0 0 0 2 1 1 0 1 0 2 2 1 1 0 0 0 0 0 12 0 1300.6564 P21333;Q60FE5;A0A087WWY3 P21333 2406 2417 FLNA Filamin-A no no 2;3 0.0017629 80.037 By MS/MS By MS/MS 1 2 1.5261 1.3667 91.951 3 Median 6.0023 6.0299 NaN 1 1 Median 1.3833 1.2379 14.009 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176060000 52447000 123610000 69099000 9490100 59609000 106960000 42957000 64000000 0 0 0 0 0 0 0 0 0 0 0 0 9571 2088;3120 9961 47570;47571;47572 47394;47395;47396;47397 47396 4 FNHHSAMVLAAGLR SKSIKENSNAAIIKRFNHHSAMVLAAGLRK RFNHHSAMVLAAGLRKQEAQNEQTSEPSNM R F N L R K 3 1 1 0 0 0 0 1 2 0 2 0 1 1 0 1 0 0 0 1 0 0 14 0 1522.7827 P32780;E9PI26 P32780 307 320 GTF2H1 General transcription factor IIH subunit 1 yes no 3 0.0024873 34.788 By MS/MS 1 0.71131 0.70783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71131 0.70783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18287000 12298000 5989300 0 0 0 0 0 0 18287000 12298000 5989300 0 0 0 0 0 0 0 0 0 9572 2219 9962 47573 47398 47398 1 FNHWELK RVRADLRDNYSPGWKFNHWELKGVPIRLEV DNYSPGWKFNHWELKGVPIRLEVGPRDMKS K F N L K G 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 1 0 0 0 0 7 0 972.48175 P07814 P07814 1355 1361 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.0044861 100.39 By MS/MS 1 1.116 0.98948 NaN 1 Median NaN NaN NaN 0 0 Median 1.116 0.98948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5388200 2462900 2925300 0 0 0 5388200 2462900 2925300 0 0 0 0 0 0 0 0 0 0 0 0 9573 1892 9963 47574 47399;47400 47400 2 FNIDGNNERPSPPPNVDYPLDGEK FVSDLKRGLKIQAAKFNIDGNNERPSPPPN PSPPPNVDYPLDGEKILHILGSIRDSVVEI K F N E K I 0 1 4 3 0 0 2 2 0 1 1 1 0 1 5 1 0 0 1 1 0 0 24 1 2683.2514 Q9NZ32;V9GYX7 Q9NZ32 231 254 ACTR10 Actin-related protein 10 yes no 3 0.039517 19.113 By MS/MS 1 1.1261 1.1411 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1261 1.1411 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7762300 3671200 4091000 0 0 0 0 0 0 7762300 3671200 4091000 0 0 0 0 0 0 0 0 0 9574 4183 9964 47575 47401 47401 1 FNIPDLK HAATSKNNNLAVTSKFNIPDLKVGTLDVLV NNLAVTSKFNIPDLKVGTLDVLVGLSDELA K F N L K V 0 0 1 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 7 0 845.4647 P21283 P21283 38 44 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 2 0.053242 38.792 By MS/MS By matching By matching By matching 1 1 1 1 0.99388 0.94649 14.989 4 Median 0.96447 0.90261 NaN 1 0 Median 1.014 0.92801 NaN 1 0 Median 1.1199 1.2509 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97412 0.96534 NaN 1 0 Median NaN NaN NaN 0 0 Median 6153400 2853000 3300400 3551500 1646700 1904800 99860 48083 51777 1892300 878950 1013300 0 0 0 609750 279310 330440 0 0 0 9575 2087 9965 47576;47577;47578;47579 47402;47403 47402 2 FNISNGGPAPEAITDK ASHNPGGPNGDFGIKFNISNGGPAPEAITD NISNGGPAPEAITDKIFQISKTIEEYAVCP K F N D K I 2 0 2 1 0 0 1 2 0 2 0 1 0 1 2 1 1 0 0 0 0 0 16 0 1629.7999 P36871;A0A3B3ITK7 P36871 131 146 PGM1 Phosphoglucomutase-1 yes no 2 2.2426E-07 83.204 By MS/MS By MS/MS 1 1 0.83355 0.74632 30.506 2 Median 0.64287 0.60151 NaN 1 1 Median 1.0808 0.92599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20624000 12593000 8031100 16973000 10653000 6319900 3651400 1940100 1711200 0 0 0 0 0 0 0 0 0 0 0 0 9576 2262 9966 47580;47581 47404;47405 47404 2 FNISNGGPAPEAITDKIFQISK ASHNPGGPNGDFGIKFNISNGGPAPEAITD PAPEAITDKIFQISKTIEEYAVCPDLKVDL K F N S K T 2 0 2 1 0 1 1 2 0 4 0 2 0 2 2 2 1 0 0 0 0 0 22 1 2346.222 P36871;A0A3B3ITK7 P36871 131 152 PGM1 Phosphoglucomutase-1 yes no 3 0.00025802 27.739 By MS/MS 1 0.67845 0.6422 NaN 1 Median 0.67845 0.6422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3796800 2378900 1417900 3796800 2378900 1417900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9577 2262 9967 47582 47406 47406 1 FNLLREENEGYAK KSVKIKTKLFYKQQKFNLLREENEGYAKLI QKFNLLREENEGYAKLIAELGQDLSGSITS K F N A K L 1 1 2 0 0 0 3 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 13 1 1581.7787 Q8NI27;A0A0C4DG98 Q8NI27 162 174 THOC2 THO complex subunit 2 yes no 2;3 3.935E-06 101.93 By matching By MS/MS By matching By matching 1 4 1 1 1.0076 1.0168 28.093 7 Median NaN NaN NaN 0 0 Median 1.1314 0.968 NaN 1 0 Median 0.97 1.116 8.3 4 0 Median 1.0533 1.0168 NaN 1 0 Median 0.46248 0.52534 NaN 1 0 Median NaN NaN NaN 0 0 Median 63173000 32174000 30998000 0 0 0 2978700 1572800 1405900 57736000 29050000 28686000 511560 213670 297890 1946500 1337400 609120 0 0 0 9578 3448 9968 47583;47584;47585;47586;47587;47588;47589 47407;47408;47409;47410;47411;47412 47409 6 FNLTGLNEQVPHYR NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ KFNLTGLNEQVPHYRQALDMILDLEPDEEL K F N Y R Q 0 1 2 0 0 1 1 1 1 0 2 0 0 1 1 0 1 0 1 1 0 0 14 0 1686.8478 Q5SRQ6;P67870;Q5SRQ3;N0E472;A0A0G2JM12;N0E644;A0A0G2JM58 Q5SRQ6 53 66 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-562 Casein kinase II subunit beta yes no 2;3 2.5581E-06 94.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1.0119 0.90675 13.44 10 Median 1.0399 0.98464 5.0951 2 0 Median 1.0749 0.91579 7.9643 2 0 Median 0.93289 0.89579 9.1753 2 0 Median 0.92823 0.7662 13.065 2 0 Median 1.1145 1.1061 NaN 1 0 Median 0.95215 0.78951 NaN 1 0 Median 70736000 34795000 35941000 34849000 16305000 18544000 2332100 1180900 1151200 27366000 14427000 12939000 1896500 888030 1008400 4155200 1930100 2225100 136570 63695 72870 9579 2628 9969 47590;47591;47592;47593;47594;47595;47596;47597;47598;47599 47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424 47416 12 FNLTYVSHDGDDK HQCATIQLDFQLPIRFNLTYVSHDGDDKKR IRFNLTYVSHDGDDKKRPVIVHRAILGSVE R F N D K K 0 0 1 3 0 0 0 1 1 0 1 1 0 1 0 1 1 0 1 1 0 0 13 0 1509.6736 P26639 P26639 571 583 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2;3 5.2998E-07 107.03 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.0795 0.98097 25.296 9 Median 0.79563 0.71997 56.665 2 0 Median 1.1081 0.96824 2.6678 2 0 Median 1.0759 1.0943 1.8634 2 0 Median 1.0614 0.92848 3.52 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84424000 41594000 42829000 26667000 15070000 11597000 18183000 8157100 10026000 22676000 10598000 12078000 16897000 7768900 9128300 0 0 0 0 0 0 9580 2147 9970 47600;47601;47602;47603;47604;47605;47606;47607;47608 47425;47426;47427;47428;47429;47430;47431;47432;47433 47427 9 FNLTYVSHDGDDKK HQCATIQLDFQLPIRFNLTYVSHDGDDKKR RFNLTYVSHDGDDKKRPVIVHRAILGSVER R F N K K R 0 0 1 3 0 0 0 1 1 0 1 2 0 1 0 1 1 0 1 1 0 0 14 1 1637.7686 P26639 P26639 571 584 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 3.1073E-06 88.092 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1374 1.1704 4.7018 4 Median 1.1638 1.1979 NaN 1 0 Median 1.1816 1.1436 NaN 1 1 Median 1.078 1.1992 NaN 1 0 Median 1.1116 1.086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40171000 18371000 21800000 7287300 3375900 3911400 4537100 2003200 2533800 13133000 5725700 7407700 15213000 7265700 7947200 0 0 0 0 0 0 9581 2147 9971 47609;47610;47611;47612 47434;47435;47436;47437;47438;47439;47440 47439 7 FNMVIPLVDGMIVSR NTGLFRIKIQGATGKFNMVIPLVDGMIVSR FNMVIPLVDGMIVSRRALGFLVRQTVINIC K F N S R R 0 1 1 1 0 0 0 1 0 2 1 0 2 1 1 1 0 0 0 3 0 0 15 0 1689.8946 Q86X10;A2A2F0;A0A0J9YW54 Q86X10 1413 1427 RALGAPB Ral GTPase-activating protein subunit beta yes no 2 0.0071352 33.409 By MS/MS 1 0.81062 0.81087 NaN 1 Median 0.81062 0.81087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 844000 454790 389210 844000 454790 389210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9582 3298 9972 47613 47441;47442 47441 2 FNNYVDCMK HFPMQSREFPPGTPRFNNYVDCMKKFLDAL PPGTPRFNNYVDCMKKFLDALELSQSPMLL R F N M K K 0 0 2 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 9 0 1189.4896 P78527 P78527 1736 1744 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00044702 126.52 By MS/MS By MS/MS By MS/MS 1 1 1 1.305 1.262 8.7351 3 Median NaN NaN NaN 0 0 Median 1.4874 1.3233 NaN 1 0 Median 1.0444 1.1172 NaN 1 0 Median 1.305 1.262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28265000 12654000 15611000 0 0 0 15686000 6089100 9596800 9883600 5375300 4508300 2695600 1189900 1505700 0 0 0 0 0 0 9583 2647 9973 47614;47615;47616 47443;47444;47445;47446;47447;47448 47445 6 FNNYVDCMKK HFPMQSREFPPGTPRFNNYVDCMKKFLDAL PGTPRFNNYVDCMKKFLDALELSQSPMLLE R F N K K F 0 0 2 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 1 1 0 0 10 1 1317.5846 P78527 P78527 1736 1745 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.007151 51.113 By MS/MS 2 1.1222 1.2735 24.01 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1222 1.2735 24.01 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13656000 6107100 7549000 0 0 0 0 0 0 13656000 6107100 7549000 0 0 0 0 0 0 0 0 0 9584 2647 9974 47617;47618 47449;47450;47451;47452 47452 4 FNPDFAEAHYLSYLNNLR LTPASLQKELNNLLKFNPDFAEAHYLSYLN DFAEAHYLSYLNNLRVQDVFSSTHSLLHYF K F N L R V 2 1 3 1 0 0 1 0 1 0 3 0 0 2 1 1 0 0 2 0 0 0 18 0 2183.0436 F5H0F9;Q9UJX4;F5GY68;H0YFB5 F5H0F9 246 263 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 0.023235 15.254 By MS/MS By matching 1 1 0.86238 0.9098 16.029 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77067 0.81232 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.965 1.019 NaN 1 0 Median NaN NaN NaN 0 0 Median 1973000 1083300 889710 0 0 0 0 0 0 1494000 804260 689770 0 0 0 478940 279000 199940 0 0 0 9585 1019 9975 47619;47620 47453 47453 1 FNPETDYLTGTDGKK SPEIVTALAIAGTLKFNPETDYLTGTDGKK FNPETDYLTGTDGKKFRLEAPDADELPKGE K F N K K F 0 0 1 2 0 0 1 2 0 0 1 2 0 1 1 0 3 0 1 0 0 0 15 1 1684.7944 A2A274;Q99798 A2A274 532 546 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 9.455E-07 88.73 By MS/MS By MS/MS By matching 2 2 1 0.94254 0.95399 27.046 5 Median 0.90995 0.93318 3.1186 2 0 Median 1.1978 1.1583 33.978 2 0 Median 1.3745 1.5545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47998000 23613000 24386000 40315000 20307000 20008000 4271100 1899600 2371500 3412200 1405800 2006400 0 0 0 0 0 0 0 0 0 9586 495 9976 47621;47622;47623;47624;47625 47454;47455;47456;47457;47458 47455 5 FNPFVTSDR ______________________________ ______________________________ K F N D R S 0 1 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1081.5193 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KSS0;E5RHH1 P61254 3 11 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.00042498 129.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1.1745 0.95932 11.903 9 Median 1.0606 1.0076 14.161 2 0 Median 1.0581 0.88557 4.1721 2 0 Median 0.99901 0.95932 NaN 1 0 Median 1.1989 0.99398 NaN 1 0 Median 1.2674 1.2723 NaN 1 0 Median 1.2285 0.97189 3.8133 2 0 Median 212960000 103240000 109720000 128470000 64149000 64323000 34478000 15805000 18673000 31529000 15104000 16426000 3334300 1317600 2016700 8902600 4257300 4645300 6243800 2608000 3635800 9587 2554 9977 47626;47627;47628;47629;47630;47631;47632;47633;47634 47459;47460;47461;47462;47463;47464;47465;47466;47467;47468;47469;47470;47471 47460 13 FNPGELR ______________________________ GDGGESERFNPGELRMAQQQALRFRGPAPP R F N L R M 0 1 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 831.4239 O14776;G3V220 O14776 14 20 TCERG1 Transcription elongation regulator 1 yes no 2 0.018274 76.035 By matching By matching By MS/MS By MS/MS 2 1 1 2 1.0035 0.90992 17.196 6 Median 1.1116 1.058 8.086 2 0 Median 1.1726 1.0019 NaN 1 0 Median 0.6921 0.76112 NaN 1 1 Median 0.90227 0.77883 8.7589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14355000 8010300 6344800 2852400 1363900 1488500 671120 301440 369680 8189100 5057900 3131200 2642500 1287100 1355400 0 0 0 0 0 0 9588 1494 9978 47635;47636;47637;47638;47639;47640 47472;47473 47473 2 FNPLNTNQFYASSMEGTTR FIKGIGAGGSITGLKFNPLNTNQFYASSME NTNQFYASSMEGTTRLQDFKGNILRVFASS K F N T R L 1 1 3 0 0 1 1 1 0 0 1 0 1 2 1 2 3 0 1 0 0 0 19 0 2176.9848 Q92466;A0A087X0X5;A0A087WYT8 Q92466 164 182 DDB2 DNA damage-binding protein 2 yes no 2;3 3.8701E-18 114.56 By MS/MS By matching 8 2 0.63376 0.6782 35.611 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62394 0.6469 13.501 8 5 Median 1.6627 1.4365 2.0402 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60696000 36452000 24245000 0 0 0 0 0 0 59762000 36053000 23709000 934240 398790 535440 0 0 0 0 0 0 9589 3527 9979;9980 47641;47642;47643;47644;47645;47646;47647;47648;47649;47650 47474;47475;47476;47477;47478;47479;47480;47481;47482;47483 47481 1756 10 FNPNFYR PPRVKLMTTGNNTVRFNPNFYRNGKVCLSI TTGNNTVRFNPNFYRNGKVCLSILGTWTGP R F N Y R N 0 1 2 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 7 0 956.45045 Q9H832;I3L4C5 Q9H832 177 183 UBE2Z Ubiquitin-conjugating enzyme E2 Z yes no 2 0.0029035 119.7 By MS/MS By matching By matching 1 1 2 0.96752 0.90081 14.523 4 Median 0.90863 0.90342 NaN 1 0 Median 0.88244 0.77009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1805 0.99299 14.186 2 0 Median 18804000 9947300 8857200 8487300 5019500 3467800 9209800 4503000 4706700 0 0 0 0 0 0 0 0 0 1107300 424720 682600 9590 3986 9981 47651;47652;47653;47654 47484 47484 1 FNPPTGTDTMVK GPSSFTAAPTGTTIKFNPPTGTDTMVKAGV TIKFNPPTGTDTMVKAGVSTNISTKHQCIT K F N V K A 0 0 1 1 0 0 0 1 0 0 0 1 1 1 2 0 3 0 0 1 0 0 12 0 1306.6227 P52948;A0A3B3ITD8 P52948 164 175 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 3.2995E-05 96.342 By MS/MS By MS/MS 1 1 0.86571 0.8379 9.5596 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72468 0.78314 NaN 1 0 Median 1.0342 0.8965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29887000 17935000 11952000 0 0 0 0 0 0 26513000 15777000 10736000 3374800 2158800 1216000 0 0 0 0 0 0 9591 2462 9982 47655;47656 47485;47486;47487;47488 47487 4 FNPSISMIK HNALIQEVISQSRARFNPSISMIKKCIEVL SQSRARFNPSISMIKKCIEVLIDKQYIERS R F N I K K 0 0 1 0 0 0 0 0 0 2 0 1 1 1 1 2 0 0 0 0 0 0 9 0 1035.5423 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 724 732 CUL2 Cullin-2 yes no 2 0.018328 40.882 By MS/MS 2 1.0269 1.0032 9.8901 2 Median 1.0269 1.0032 9.8901 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4270000 2138600 2131400 4270000 2138600 2131400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9592 196 9983 47657;47658 47489 47489 1 FNQAQSGNIQSTVMLDK SCLKEERKILENAQRFNQAQSGNIQSTVML QAQSGNIQSTVMLDKQKELDSKVRNVKDKV R F N D K Q 1 0 2 1 0 3 0 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 17 0 1879.9098 P42224;J3KPM9;E7EPD2;D2KFR9;E7ENM1 P42224 122 138 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 1.7143E-10 103.88 By MS/MS By matching 1 1 1.1066 0.99646 5.8748 2 Median 1.135 1.0387 NaN 1 0 Median 1.0789 0.95591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10194000 4484400 5709300 8355600 3599800 4755900 1838100 884640 953430 0 0 0 0 0 0 0 0 0 0 0 0 9593 2308 9984 47659;47660 47490;47491 47491 2 FNQAQSGNIQSTVMLDKQK SCLKEERKILENAQRFNQAQSGNIQSTVML QSGNIQSTVMLDKQKELDSKVRNVKDKVMC R F N Q K E 1 0 2 1 0 4 0 1 0 1 1 2 1 1 0 2 1 0 0 1 0 0 19 1 2136.0634 P42224;J3KPM9;E7EPD2;D2KFR9;E7ENM1 P42224 122 140 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 3 0.021912 24.893 By MS/MS 1 1.4317 1.4787 NaN 1 Median 1.4317 1.4787 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3012300 1100500 1911900 3012300 1100500 1911900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9594 2308 9985 47661 47492 47492 1 FNQLPVELK ALIGVATAADTLVTKFNQLPVELKKEVEMK DTLVTKFNQLPVELKKEVEMKGVWSMPSKY K F N L K K 0 0 1 0 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 9 0 1086.6073 Q9NUJ1 Q9NUJ1 186 194 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2 0.0034179 65.246 By MS/MS By matching By matching By matching 1 2 1 1 0.96227 0.86603 39.179 5 Median 0.96227 0.92225 NaN 1 0 Median 1.2333 1.0817 31.447 2 0 Median 0.58637 0.62956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57371 0.48259 NaN 1 0 Median 19073000 10041000 9031500 4775700 2457600 2318000 9812000 4985800 4826200 3350200 1922100 1428100 0 0 0 0 0 0 1134700 675530 459210 9595 4115 9986 47662;47663;47664;47665;47666 47493;47494 47494 2 FNQLPVELKK ALIGVATAADTLVTKFNQLPVELKKEVEMK TLVTKFNQLPVELKKEVEMKGVWSMPSKYS K F N K K E 0 0 1 0 0 1 1 0 0 0 2 2 0 1 1 0 0 0 0 1 0 0 10 1 1214.7023 Q9NUJ1 Q9NUJ1 186 195 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2;3 0.00014698 72.848 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 0.98206 1.0194 24.815 8 Median 0.85943 0.83376 12.723 3 1 Median 1.5013 1.3629 4.4978 2 0 Median 0.85428 0.85109 NaN 1 0 Median 1.4572 1.3112 NaN 1 0 Median 1.0439 1.1056 NaN 1 0 Median NaN NaN NaN 0 0 Median 62834000 33374000 29461000 45782000 25058000 20724000 3507000 1586900 1920100 10098000 5171000 4926600 1593100 741820 851230 1855100 816200 1038900 0 0 0 9596 4115 9987 47667;47668;47669;47670;47671;47672;47673;47674 47495;47496;47497;47498;47499;47500;47501;47502;47503;47504 47495 9 FNQTYQLAHGTAEEK PSTEAVALVLEEMWKFNQTYQLAHGTAEEK FNQTYQLAHGTAEEKMPVWYIMDEFGSRIQ K F N E K M 2 0 1 0 0 2 2 1 1 0 1 1 0 1 0 0 2 0 1 0 0 0 15 0 1735.8166 Q14166 Q14166 173 187 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2;3 2.1713E-08 130.56 By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 1.2187 1.058 21.948 10 Median 1.0918 1.0123 21.65 4 0 Median 1.2558 1.058 30.375 4 2 Median 1.0876 1.1173 NaN 1 0 Median 1.2756 1.0964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87406000 40553000 46853000 30179000 13908000 16271000 48301000 22544000 25757000 8240100 3849100 4391000 686250 251860 434390 0 0 0 0 0 0 9597 2861 9988 47675;47676;47677;47678;47679;47680;47681;47682;47683;47684 47505;47506;47507;47508;47509;47510;47511;47512;47513;47514;47515;47516;47517 47517 13 FNQVESDKLR GTMVRSGQDPYARNKFNQVESDKLRMDRAI YARNKFNQVESDKLRMDRAIPDTRHDQCQR K F N L R M 0 1 1 1 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1234.6306 Q10471 Q10471 104 113 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 3 0.00155 51.762 By MS/MS 1 1.3156 1.205 NaN 1 Median NaN NaN NaN 0 0 Median 1.3156 1.205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3689800 1704200 1985600 0 0 0 3689800 1704200 1985600 0 0 0 0 0 0 0 0 0 0 0 0 9598 2751 9989 47685 47518;47519 47519 2 FNQVLDQFGEK YFLLTQAVRTGNLAKFNQVLDQFGEKFQAD NLAKFNQVLDQFGEKFQADGTYTLIIRLRH K F N E K F 0 0 1 1 0 2 1 1 0 0 1 1 0 2 0 0 0 0 0 1 0 0 11 0 1323.6459 O43242 O43242 375 385 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.00015771 113.62 By MS/MS By MS/MS By MS/MS 1 1 1 1.1194 1.0379 14.747 3 Median 1.1194 1.0379 NaN 1 0 Median 1.0938 0.91494 NaN 1 0 Median 1.2531 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73301000 31635000 41666000 49499000 20671000 28827000 14719000 6878500 7840500 9083400 4085100 4998300 0 0 0 0 0 0 0 0 0 9599 1560 9990 47686;47687;47688 47520;47521;47522;47523 47522 4 FNQVLGDDEKLR KNLPDPGKAQDFVKKFNQVLGDDEKLRSQL VKKFNQVLGDDEKLRSQLELLISPTCSCKQ K F N L R S 0 1 1 2 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1432.731 Q29RF7 Q29RF7 559 570 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 1.4431E-06 104.22 By MS/MS By matching 2 1 0.93316 1.0585 11.629 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93052 1.0552 0.43743 2 1 Median 1.3429 1.2906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42902000 21178000 21724000 0 0 0 0 0 0 40652000 20314000 20338000 2250400 864320 1386100 0 0 0 0 0 0 9600 3003 9991 47689;47690;47691 47524;47525;47526 47524 3 FNRDVDETISWIK LQRQGKLFGAAEVQRFNRDVDETISWIKEK QRFNRDVDETISWIKEKEQLMASDDFGRDL R F N I K E 0 1 1 2 0 0 1 0 0 2 0 1 0 1 0 1 1 1 0 1 0 0 13 1 1621.81 A0A0D9SF54;Q13813 Q13813 260 272 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 7.518E-06 116.23 By MS/MS By matching By MS/MS By matching 4 1 3 1 0.97502 1.1086 48.411 9 Median 0.97137 0.94334 62.278 4 0 Median 1.612 1.5635 NaN 1 0 Median 0.97502 1.1686 32.985 3 0 Median 0.7765 0.64585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46056000 22059000 23996000 19967000 9550600 10416000 1375900 393450 982410 24631000 12068000 12564000 81214 47289 33924 0 0 0 0 0 0 9601 264;2838 9992 47692;47693;47694;47695;47696;47697;47698;47699;47700 47527;47528;47529;47530;47531 47531 5 FNSGTYNNQWMIVDYK RLASDGATWADIFKRFNSGTYNNQWMIVDY NSGTYNNQWMIVDYKAFIPGGPSPGSRVLT R F N Y K A 0 0 3 1 0 1 0 1 0 1 0 1 1 1 0 1 1 1 2 1 0 0 16 0 1978.8883 Q8NHP8 Q8NHP8 369 384 PLBD2 Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form yes yes 2 0.0010166 39.266 By MS/MS 1 1.2669 1.2319 NaN 1 Median 1.2669 1.2319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1272500 568440 704080 1272500 568440 704080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9602 3445 9993 47701 47532 47532 1 FNSHESAAHAIVSVNGTTIEGHVVK MEIRVFPDKGYSFVRFNSHESAAHAIVSVN IVSVNGTTIEGHVVKCYWGKETLDMINPVQ R F N V K C 3 0 2 0 0 0 2 2 3 2 0 1 0 1 0 3 2 0 0 4 0 0 25 0 2603.3092 F8W8I6;P31483;F8WE16 F8W8I6 256 280 TIA1 Nucleolysin TIA-1 isoform p40 yes no 4 0.0032389 24.096 By MS/MS 1 0.9553 0.98688 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9553 0.98688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15647000 9102300 6544600 0 0 0 0 0 0 15647000 9102300 6544600 0 0 0 0 0 0 0 0 0 9603 1086 9994 47702 47533;47534 47534 2 FNSLNELVDYHR VLRDGAGKYFLWVVKFNSLNELVDYHRSTS VVKFNSLNELVDYHRSTSVSRNQQIFLRDI K F N H R S 0 1 2 1 0 0 1 0 1 0 2 0 0 1 0 1 0 0 1 1 0 0 12 0 1505.7263 P62993 P62993 125 136 GRB2 Growth factor receptor-bound protein 2 yes yes 3 0.00013943 76.522 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 1.4243 1.2532 17.005 7 Median 1.3023 1.2733 8.7557 2 0 Median 1.9817 1.679 NaN 1 0 Median 1.0405 0.99937 NaN 1 0 Median 1.5158 1.2532 NaN 1 0 Median 0.99581 1.1936 NaN 1 0 Median 1.8491 1.5068 NaN 1 0 Median 82131000 35277000 46854000 52332000 21762000 30570000 2816900 1021800 1795100 22428000 10388000 12040000 1323500 520440 803110 2783000 1440800 1342200 447620 143850 303770 9604 2613 9995 47703;47704;47705;47706;47707;47708;47709 47535;47536;47537;47538;47539;47540;47541 47538 7 FNTANDDNVTQVR SALEHSIQYSGEVRRFNTANDDNVTQVRAF RRFNTANDDNVTQVRAFYVNVLNEEQRKRL R F N V R A 1 1 3 2 0 1 0 0 0 0 0 0 0 1 0 0 2 0 0 2 0 0 13 0 1492.6906 P04040 P04040 432 444 CAT Catalase yes yes 2 7.118E-11 180.36 By MS/MS By MS/MS By MS/MS 1 2 1 1.075 0.91544 9.5746 3 Median 0.8625 0.81627 NaN 1 0 Median 1.1077 0.95065 5.3383 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34551000 16694000 17858000 17266000 8910600 8355200 16321000 6818000 9502500 0 0 0 0 0 0 0 0 0 965030 965030 0 9605 1841 9996 47710;47711;47712;47713 47542;47543;47544;47545;47546;47547 47543 6 FNTGPVGK QIRMCKDLKHLIYYRFNTGPVGKGPGCGFW KHLIYYRFNTGPVGKGPGCGFWAAGWRVWL R F N G K G 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 8 0 818.42865 Q6P2Q9;I3L0J9 Q6P2Q9 616 623 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0067369 69.998 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1.0502 1.0439 13.221 4 Median NaN NaN NaN 0 0 Median 1.2031 1.0603 NaN 1 1 Median 0.92213 1.0278 NaN 1 0 Median 1.1704 1.0627 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94229 0.80758 NaN 1 0 Median 7454700 3522100 3932600 0 0 0 1764500 693540 1071000 3566900 1790600 1776200 681230 328900 352320 0 0 0 1442100 709030 733060 9606 3157 9997 47714;47715;47716;47717;47718 47548;47549;47550;47551;47552 47548 5 FNTPQQPK GRNYIVEDGDIIFFKFNTPQQPKKK_____ GDIIFFKFNTPQQPKKK_____________ K F N P K K 0 0 1 0 0 2 0 0 0 0 0 1 0 1 2 0 1 0 0 0 0 0 8 0 958.48723 J3KQ32;Q9NTK5 J3KQ32 407 414 OLA1 Obg-like ATPase 1 yes no 2 0.010415 58.917 By MS/MS 1 0.81596 0.70369 NaN 1 Median NaN NaN NaN 0 0 Median 0.81596 0.70369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1925500 1096900 828620 0 0 0 1925500 1096900 828620 0 0 0 0 0 0 0 0 0 0 0 0 9607 1315 9998 47719 47553 47553 1 FNTSDVSAIEK LFEGRITPELLTRGKFNTSDVSAIEKNKEG TRGKFNTSDVSAIEKNKEGLHNAKEILTRL K F N E K N 1 0 1 1 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1209.5877 P19367 P19367 334 344 HK1 Hexokinase-1 yes yes 2 0.0038792 70.977 By MS/MS 1 1.7614 1.5109 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7614 1.5109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3215000 1195100 2019900 0 0 0 0 0 0 0 0 0 3215000 1195100 2019900 0 0 0 0 0 0 9608 2064 9999 47720 47554 47554 1 FNTTSVIK EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN QIFRPLKFNTTSVIKIAVEPVNPSELPKML K F N I K I 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 908.49673 Q15029 Q15029 582 589 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0095084 60.682 By MS/MS By matching By matching 1 1 2 1.0908 1.1391 11.748 4 Median 1.1727 1.161 NaN 1 0 Median 1.5628 1.3239 NaN 1 0 Median 0.96674 1.0548 8.17 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20442000 8685000 11757000 2893500 1060500 1832900 9276100 3631300 5644800 8272300 3993200 4279100 0 0 0 0 0 0 0 0 0 9609 2917 10000 47721;47722;47723;47724 47555 47555 1 FNVEDGEIVQQVR WALGVVPFSHVNIVKFNVEDGEIVQQVRVS VKFNVEDGEIVQQVRVSTPWLQHLSGACGV K F N V R V 0 1 1 1 0 2 2 1 0 1 0 0 0 1 0 0 0 0 0 3 0 0 13 0 1531.7631 Q8N766 Q8N766 202 214 EMC1 ER membrane protein complex subunit 1 yes yes 2 1.2906E-06 163.38 By MS/MS By matching By MS/MS By MS/MS 2 3 1 1 1.1359 1.1212 19.23 7 Median 0.97287 0.93262 23.872 2 1 Median 1.4066 1.1999 22.737 3 0 Median 1.1359 1.2173 NaN 1 0 Median 1.3156 1.1212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32715000 15726000 16989000 23362000 11546000 11816000 4256000 1841800 2414100 3790600 1827100 1963600 1306700 511220 795440 0 0 0 0 0 0 9610 3392 10001 47725;47726;47727;47728;47729;47730;47731 47556;47557;47558;47559;47560;47561 47557 6 FNVIQPGPIK MSKSLAAEWGKYGMRFNVIQPGPIKTKGAF KYGMRFNVIQPGPIKTKGAFSRLDPTGTFE R F N I K T 0 0 1 0 0 1 0 1 0 2 0 1 0 1 2 0 0 0 0 1 0 0 10 0 1111.639 Q16698;H0YAW3 Q16698 235 244 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.0016573 63.565 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.87879 0.7667 32.491 4 Median 0.65013 0.58921 NaN 1 0 Median 1.1879 0.99764 NaN 1 0 Median 0.57606 0.55311 NaN 1 0 Median 1.192 1.0031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63896000 38233000 25664000 46973000 29614000 17359000 6418600 2868400 3550200 6399900 3940300 2459600 4104400 1809900 2294400 0 0 0 0 0 0 9611 2994 10002 47732;47733;47734;47735 47562;47563;47564;47565;47566;47567 47564 6 FNVLQYVVPEVK QAPPTRIGLINDMVRFNVLQYVVPEVKDLY MVRFNVLQYVVPEVKDLYNWLEVEFNPLKL R F N V K D 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 4 0 0 12 0 1433.7919 Q14152 Q14152 377 388 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 3.2326E-06 111.61 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.93528 0.89785 9.5678 6 Median 0.92732 0.89785 2.351 2 0 Median 1.0353 0.91649 NaN 1 0 Median 0.69497 0.75371 NaN 1 0 Median 1.0405 0.94205 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91835 0.77164 NaN 1 0 Median 70178000 35377000 34801000 38759000 19601000 19158000 26536000 12850000 13685000 4490100 2714000 1776100 103390 51221 52168 0 0 0 289490 160180 129310 9612 2860 10003 47736;47737;47738;47739;47740;47741 47568;47569;47570;47571;47572;47573;47574;47575;47576;47577 47571 10 FNVLYDR TITKTCNTMNQFVNKFNVLYDRQGIGRRMR TMNQFVNKFNVLYDRQGIGRRMRGLFF___ K F N D R Q 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 925.46577 Q7L5N1;E7EM64 Q7L5N1 309 315 COPS6 COP9 signalosome complex subunit 6 yes no 2 0.0081211 94.006 By MS/MS By MS/MS 1 1 1.284 1.2362 16.431 2 Median 1.1755 1.1006 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4024 1.3885 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19752000 8387200 11365000 14914000 6592500 8321300 0 0 0 4838200 1794700 3043500 0 0 0 0 0 0 0 0 0 9613 855 10004 47742;47743 47578;47579 47578 2 FNVPVSLESK SEIPQTERMQKRAERFNVPVSLESKKAARA KRAERFNVPVSLESKKAARAARFGISSVPT R F N S K K 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 2 0 0 10 0 1118.5972 P82979;H0YHG0;F8VZQ9 P82979 110 119 SARNP SAP domain-containing ribonucleoprotein yes no 2 0.00039409 99.688 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 4 2 2 0.96694 0.88583 17.081 13 Median 0.80597 0.74227 NaN 1 0 Median 0.96694 0.81804 NaN 1 0 Median 0.82347 0.79494 5.6946 3 1 Median 1.1371 0.93256 19.198 4 0 Median 0.96865 0.98062 14.376 2 0 Median 1.001 0.82238 12.162 2 0 Median 214980000 110110000 104870000 12470000 6578900 5891300 1402500 652920 749540 84423000 45070000 39353000 45969000 21808000 24161000 61334000 31377000 29957000 9376900 4623100 4753700 9614 2661 10005 47744;47745;47746;47747;47748;47749;47750;47751;47752;47753;47754;47755;47756 47580;47581;47582;47583;47584;47585;47586;47587;47588;47589;47590;47591 47590 12 FNVPVSLESKK SEIPQTERMQKRAERFNVPVSLESKKAARA RAERFNVPVSLESKKAARAARFGISSVPTK R F N K K A 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 2 0 0 0 2 0 0 11 1 1246.6921 P82979;H0YHG0;F8VZQ9 P82979 110 120 SARNP SAP domain-containing ribonucleoprotein yes no 2;3 0.00019007 86.624 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 0.93683 0.91403 6.598 8 Median 0.99048 0.96735 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87502 0.91403 1.7122 2 0 Median 1.046 0.91843 5.0993 2 0 Median 0.80085 0.85088 0.62761 2 0 Median 1.2053 1.0299 NaN 1 0 Median 59079000 29928000 29151000 4172700 2159400 2013200 0 0 0 21203000 10944000 10260000 15433000 7060800 8372600 17809000 9576800 8231800 461110 187410 273700 9615 2661 10006 47757;47758;47759;47760;47761;47762;47763;47764 47592;47593;47594;47595;47596;47597 47596 6 FNVTGTPEQYVPYSTTR TKPLTARKFIWTNHKFNVTGTPEQYVPYST VTGTPEQYVPYSTTRKKIQEWIPPSTPYK_ K F N T R K 0 1 1 0 0 1 1 1 0 0 0 0 0 1 2 1 4 0 2 2 0 0 17 0 1958.9374 Q9UI09 Q9UI09 115 131 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes yes 2 2.8525E-06 85.288 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.89371 0.70431 20.485 5 Median 0.68086 0.65563 NaN 1 0 Median 1.2738 1.06 NaN 1 0 Median 0.63297 0.64137 NaN 1 0 Median 0.9584 0.78342 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89371 0.70431 NaN 1 0 Median 29745000 17444000 12301000 18336000 10630000 7705400 1008000 408930 599110 9988400 6184100 3804200 296550 154520 142030 0 0 0 116240 66173 50069 9616 4286 10007 47765;47766;47767;47768;47769 47598;47599;47600;47601;47602;47603 47598 6 FNVWDTAGQEK EVHPLVFHTNRGPIKFNVWDTAGQEKFGGL GPIKFNVWDTAGQEKFGGLRDGYYIQEMGI K F N E K F 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 11 0 1293.599 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 61 71 RAN GTP-binding nuclear protein Ran yes no 2 6.6504E-05 152.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 7 2 5 5 1.1307 1.0036 16.904 29 Median 1.0162 0.95205 11.878 5 0 Median 1.1623 0.9907 8.6921 5 0 Median 1.1318 1.095 8.5399 7 1 Median 1.2535 1.054 3.5043 2 0 Median 1.0595 1.0521 22.245 5 0 Median 1.1792 0.96644 24.297 5 0 Median 2094300000 945750000 1148500000 797450000 358590000 438850000 98297000 42902000 55395000 967630000 439340000 528290000 78752000 34617000 44135000 78050000 35897000 42152000 74093000 34403000 39690000 9617 623 10008 47770;47771;47772;47773;47774;47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798 47604;47605;47606;47607;47608;47609;47610;47611;47612;47613;47614;47615;47616;47617;47618;47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631;47632;47633;47634;47635;47636;47637;47638;47639;47640 47610 37 FNVWDVGGQDK TVGFNVETVTYKNVKFNVWDVGGQDKIRPL KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL K F N D K I 0 0 1 2 0 1 0 2 0 0 0 1 0 1 0 0 0 1 0 2 0 0 11 0 1263.5884 P62330 P62330 59 69 ARF6 ADP-ribosylation factor 6 yes yes 2 0.0005343 67.726 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.2707 1.0256 13.074 6 Median 0.86767 0.81695 NaN 1 0 Median 1.2675 1.0986 NaN 1 0 Median 0.92598 0.86777 NaN 1 0 Median 1.2748 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2991 1.0682 7.9254 2 0 Median 37884000 19131000 18753000 24139000 12520000 11619000 1549400 781550 767880 10978000 5312400 5665100 269460 130420 139040 0 0 0 948070 385960 562110 9618 2588 10009 47799;47800;47801;47802;47803;47804 47641;47642;47643;47644;47645 47642 5 FNYGFEYLGVQDK TDVLQQLSIQMANAKFNYGFEYLGVQDKLV AKFNYGFEYLGVQDKLVQTPLTDRCYLTMT K F N D K L 0 0 1 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 2 1 0 0 13 0 1578.7355 Q14204 Q14204 1866 1878 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.3111E-07 113.69 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 2 1.095 1.1152 14.812 9 Median 1.1162 1.0964 7.5565 2 0 Median 1.1953 1.0434 9.4133 2 0 Median 1.0854 1.2062 NaN 1 0 Median 1.2697 1.204 NaN 1 0 Median 1.095 1.1606 NaN 1 0 Median 0.9709 0.83796 8.5922 2 0 Median 78894000 35623000 43271000 58892000 26285000 32607000 9667000 4215400 5451600 6826400 3547000 3279400 1180000 498630 681420 1990700 895550 1095100 337650 181370 156280 9619 2865 10010 47805;47806;47807;47808;47809;47810;47811;47812;47813 47646;47647;47648;47649;47650;47651 47646 6 FNYSGSGGR SPGGGGGSDYNYESKFNYSGSGGRSGGNSY YNYESKFNYSGSGGRSGGNSYGSGGASYNP K F N G R S 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 1 0 0 0 9 0 943.41479 Q12906 Q12906 807 815 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.00060254 110.31 By matching By MS/MS By MS/MS 1 2 1 1.187 1.0931 16.086 4 Median NaN NaN NaN 0 0 Median 1.0987 0.95091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2129 1.2663 4.4957 2 0 Median 1.1972 0.97401 NaN 1 0 Median 10640000 4671100 5969100 0 0 0 1410200 758050 652180 0 0 0 0 0 0 7137800 2995100 4142700 2092200 917980 1174200 9620 2769 10011 47814;47815;47816;47817 47652;47653;47654;47655;47656 47654 5 FPAAQAPDPSETPK AAQSKSSEDIIKFSKFPAAQAPDPSETPKI KFPAAQAPDPSETPKIETDHWPGPPSFAVV K F P P K I 3 0 0 1 0 1 1 0 0 0 0 1 0 1 4 1 1 0 0 0 0 0 14 0 1454.7042 J3QSX6;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639 J3QSX6 173 186 ABLIM1 Actin-binding LIM protein 1 yes no 2 0.039646 52.391 By MS/MS 1 0.71317 0.75877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71317 0.75877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3335800 2097200 1238600 0 0 0 0 0 0 3335800 2097200 1238600 0 0 0 0 0 0 0 0 0 9621 1356 10012 47818 47657 47657 0 FPAEDEFPDLSAHNNHMAK ______________________________ DEFPDLSAHNNHMAKVLTPELYAELRAKST R F P A K V 3 0 2 2 0 0 2 0 2 0 1 1 1 2 2 1 0 0 0 0 0 0 19 0 2168.9586 P12277;G3V4N7 P12277 14 32 CKB Creatine kinase B-type yes no 4 0.0085979 22.435 By MS/MS By matching By MS/MS 1 1 1 0.58757 0.56104 7.8612 3 Median 0.58757 0.54909 NaN 1 0 Median 0.73656 0.63518 NaN 1 0 Median 0.54302 0.56104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23947000 14061000 9886200 7280800 4577300 2703500 2281300 1343100 938150 14385000 8140700 6244600 0 0 0 0 0 0 0 0 0 9622 1980 10013 47819;47820;47821 47658;47659 47658 2 FPAEQYYR HFGTVKTHLTSLKTKFPAEQYYRFHEHWRF LTSLKTKFPAEQYYRFHEHWRFVLQRLVFL K F P Y R F 1 1 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 2 0 0 0 8 0 1072.4978 E9PGT1;Q15631;H7C1D4 E9PGT1 74 81 TSN Translin yes no 2 0.0025421 107.43 By MS/MS By MS/MS By matching 1 1 1 0.94484 0.82614 5.0702 3 Median 0.94484 0.89787 NaN 1 0 Median 0.9688 0.81915 NaN 1 0 Median 0.87309 0.82614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35805000 18435000 17370000 28207000 14637000 13570000 5136400 2521600 2614800 2462000 1276400 1185600 0 0 0 0 0 0 0 0 0 9623 925 10014 47822;47823;47824 47660;47661;47662 47661 3 FPAGHSVIQLAR LKGRKLDDTPSGAGKFPAGHSVIQLARRQD AGKFPAGHSVIQLARRQDSDLVQCGVTSPS K F P A R R 2 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 1 0 0 12 0 1294.7146 Q9HC52;C9J6K3 Q9HC52 241 252 CBX8 Chromobox protein homolog 8 yes no 3 0.00027385 58.172 By MS/MS By MS/MS 1 1 0.93064 0.92597 6.4931 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90048 0.88442 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96182 0.96948 NaN 1 0 Median NaN NaN NaN 0 0 Median 19217000 9584100 9633100 0 0 0 0 0 0 16244000 7946900 8296600 0 0 0 2973600 1637200 1336400 0 0 0 9624 4026 10015 47825;47826 47663;47664;47665;47666;47667 47664 5 FPAVGEPNIQQYAQNMGLPQNR NILKRVPNSVLWLLRFPAVGEPNIQQYAQN NIQQYAQNMGLPQNRIIFSPVAPKEEHVRR R F P N R I 2 1 3 0 0 4 1 2 0 1 1 0 1 1 3 0 0 0 1 1 0 0 22 0 2471.2016 O15294 O15294 878 899 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 3 0.00020386 28.505 By MS/MS By MS/MS By matching 1 2 1 0.8166 0.76565 30.379 4 Median 0.75536 0.75073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64938 0.69653 51.685 2 0 Median 0.8828 0.78086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6558100 3474000 3084100 1744400 945000 799410 0 0 0 4636700 2436300 2200500 177000 92763 84234 0 0 0 0 0 0 9625 1537 10016 47827;47828;47829;47830 47668;47669;47670 47669 3 FPAVNSLIQR MLKSIHSKMNTLANRFPAVNSLIQRINLRK TLANRFPAVNSLIQRINLRKRRDSLILGGV R F P Q R I 1 1 1 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1143.64 K7EJC8;E9PCW1;O95249;G5E9T8 K7EJC8 198 207 GOSR1 Golgi SNAP receptor complex member 1 yes no 2 0.0016815 81.296 By MS/MS 1 0.65615 0.62168 NaN 1 Median 0.65615 0.62168 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8875800 5443500 3432300 8875800 5443500 3432300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9626 913 10017 47831 47671 47671 1 FPDAGEDELLK MRFIAKVLKDSLHEKFPDAGEDELLKIIGN LHEKFPDAGEDELLKIIGNLLYYRYMNPAI K F P L K I 1 0 0 2 0 0 2 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 11 0 1232.5925 P46940;A0A0J9YXZ5;H0YLE8 P46940 1175 1185 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0003569 71.349 By MS/MS By MS/MS 1 3 0.9301 0.86124 20.972 4 Median 1.02 0.98661 NaN 1 0 Median 0.8481 0.7518 23.518 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18850000 10118000 8732600 11162000 6009800 5152100 7688500 4108000 3580500 0 0 0 0 0 0 0 0 0 0 0 0 9627 2350 10018 47832;47833;47834;47835 47672;47673;47674 47673 3 FPDENFK TRGDGTGGKSIYGERFPDENFKLKHYGPGW GKSIYGERFPDENFKLKHYGPGWVSMANAG R F P F K L 0 0 1 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 7 0 895.40758 P23284 P23284 123 129 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.0021797 114.19 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.187 1.0077 9.6667 6 Median NaN NaN NaN 0 0 Median 1.1808 1.0143 NaN 1 0 Median 0.90019 0.84435 NaN 1 0 Median 1.1932 0.98946 NaN 1 0 Median 0.95016 1.1215 NaN 1 0 Median 1.2679 1.0355 4.7578 2 0 Median 52897000 27263000 25633000 0 0 0 3842500 1799200 2043300 38924000 21117000 17808000 7133000 2943400 4189500 670230 331050 339180 2326600 1073000 1253600 9628 2109 10019 47836;47837;47838;47839;47840;47841 47675;47676;47677;47678;47679;47680;47681;47682;47683;47684;47685;47686 47676 12 FPDENFTLK TNHNGTGGKSIYGSRFPDENFTLKHVGPGV SIYGSRFPDENFTLKHVGPGVLSMANAGPN R F P L K H 0 0 1 1 0 0 1 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 9 0 1109.5393 P30405;R4GN99;H0Y548 P30405 125 133 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00079617 97.431 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 5 1 1 1.1756 0.96291 12.543 6 Median 0.93196 0.87737 NaN 1 0 Median 1.3123 1.1208 9.5879 2 0 Median 0.93863 0.88102 NaN 1 0 Median 1.2409 1.0308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1299 0.89945 NaN 1 0 Median 176330000 86602000 89724000 25003000 13038000 11964000 11229000 4646900 6582500 104870000 53916000 50952000 29158000 12596000 16563000 0 0 0 6067400 2404800 3662600 9629 2192 10020 47842;47843;47844;47845;47846;47847;47848;47849;47850;47851 47687;47688;47689;47690;47691;47692;47693;47694;47695;47696;47697;47698;47699;47700;47701;47702;47703;47704;47705;47706;47707;47708;47709;47710;47711;47712;47713 47696 27 FPDLTVELNR LKQVISLQTKNPEGRFPDLTVELNRWDTAF NPEGRFPDLTVELNRWDTAFDHEKARKTGL R F P N R W 0 1 1 1 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 10 0 1202.6295 P52701;A0A494C0M1;A0A087WWJ1 P52701 902 911 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00036244 95.502 By MS/MS By MS/MS By MS/MS 2 1 2 0.81418 0.81844 5.6451 5 Median 0.82166 0.77476 4.432 2 2 Median 0.97205 0.81844 NaN 1 0 Median 0.78934 0.85678 2.5282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29575000 15547000 14028000 14769000 7856500 6912800 5871500 2817300 3054200 8933700 4873000 4060700 0 0 0 0 0 0 0 0 0 9630 2453 10021 47852;47853;47854;47855;47856 47714;47715;47716;47717;47718;47719 47716 6 FPDREENAVHSTEPVVQENGDEAGEGR SRIQQITRDFSVQIKFPDREENAVHSTEPV EPVVQENGDEAGEGREAKDCDPGSPRRCDI K F P G R E 2 2 2 2 0 1 6 3 1 0 0 0 0 1 2 1 1 0 0 3 0 0 27 1 2967.3231 Q00341;A0A024R4E5;H0Y394 Q00341 909 935 HDLBP Vigilin yes no 4 1.2702E-19 65.275 By MS/MS 1 0.52559 0.56207 NaN 1 Median 0.52559 0.56207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8041800 4753500 3288300 8041800 4753500 3288300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9631 4 10022 47857 47720;47721 47720 2 FPDSVEELR ______________________________ ______________________________ K F P L R A 0 1 0 1 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1090.5295 Q15785 Q15785 5 13 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.0049104 59.245 By matching By matching By MS/MS 1 1 1 1.1309 0.91645 4.3185 3 Plateau 0.98212 0.86644 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90167 0.91645 NaN 1 0 Median 1.1309 0.94323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6205400 2626400 3579000 1362600 484390 878240 0 0 0 1345300 612420 732840 3497500 1529600 1967900 0 0 0 0 0 0 9632 2971 10023 47858;47859;47860 47722 47722 1 FPEEEAPSTVLSQNLFTPK LKNPILWNVADVVIKFPEEEAPSTVLSQNL EAPSTVLSQNLFTPKQEIQHLFREPEKRPP K F P P K Q 1 0 1 0 0 1 3 0 0 0 2 1 0 2 3 2 2 0 0 1 0 0 19 0 2133.063 P04844;Q5JYR3;H0Y5M1 P04844 505 523 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 1.1299E-07 69.03 By MS/MS By matching By matching 2 1 1 0.66636 0.66674 14.63 3 Median 0.63595 0.61782 10.777 2 0 Median 0.87039 0.76701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11834000 6820600 5013300 10867000 6369600 4496900 833220 399370 433850 0 0 0 134140 51627 82514 0 0 0 0 0 0 9633 1854 10024 47861;47862;47863;47864 47723;47724;47725;47726 47725 4 FPEELTQTFMSCNLITGMFQR HFDKDGWSLWYSEYRFPEELTQTFMSCNLI QTFMSCNLITGMFQRLDKLRKNAFASVILF R F P Q R L 0 1 1 0 1 2 2 1 0 1 2 0 2 3 1 1 3 0 0 0 0 0 21 0 2549.1753 P26641 P26641 328 348 EEF1G Elongation factor 1-gamma yes yes 3 0.058461 7.712 By matching By MS/MS 1 1 1.0673 0.99467 34.863 2 Median NaN NaN NaN 0 0 Median 0.87222 0.77735 NaN 1 0 Median 1.3061 1.2727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 951270 455100 496160 0 0 0 284150 133580 150580 667110 321530 345590 0 0 0 0 0 0 0 0 0 9634 2149 10025 47865;47866 47727 47727 1 FPEHELTFDPQR GKQADNPHVALYQARFPEHELTFDPQRQTV QARFPEHELTFDPQRQTVHFQISSQLQFSP R F P Q R Q 0 1 0 1 0 1 2 0 1 0 1 0 0 2 2 0 1 0 0 0 0 0 12 0 1514.7154 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06 A0A087X054 120 131 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 0.00017484 102.06 By MS/MS 3 0.93855 0.90644 35.406 3 Median 0.93855 0.90644 35.406 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39659000 24092000 15567000 39659000 24092000 15567000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9635 101 10026 47867;47868;47869 47728;47729;47730 47729 3 FPEILQK LDHEKEWKLGRCILRFPEILQKILDDLFLH KLGRCILRFPEILQKILDDLFLHTLCDYIY R F P Q K I 0 0 0 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 7 0 873.496 P54136 P54136 581 587 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0076099 88.643 By MS/MS By MS/MS By matching 1 1 1 0.89546 0.76828 7.9542 3 Median 0.74973 0.70271 NaN 1 0 Median 0.98541 0.82355 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89546 0.76828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31527000 16404000 15123000 13857000 7808700 6047900 17278000 8391100 8886800 0 0 0 392800 204130 188670 0 0 0 0 0 0 9636 2480 10027 47870;47871;47872 47731;47732 47731 2 FPELESLVPNALDYIR LNIIHKFIRDKYSKRFPELESLVPNALDYI PELESLVPNALDYIRTVKELGNSLDKCKNN R F P I R T 1 1 1 1 0 0 2 0 0 1 3 0 0 1 2 1 0 0 1 1 0 0 16 0 1874.9778 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 122 137 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.021004 39.917 By MS/MS 1 0.63912 0.67194 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63912 0.67194 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2196400 1475100 721380 0 0 0 0 0 0 2196400 1475100 721380 0 0 0 0 0 0 0 0 0 9637 3513 10028 47873 47733 47733 1 FPEPQEVVEELKK ELWTGIKKGPPRKLKFPEPQEVVEELKKYL LKFPEPQEVVEELKKYLS____________ K F P K K Y 0 0 0 0 0 1 4 0 0 0 1 2 0 1 2 0 0 0 0 2 0 0 13 1 1570.8243 A0A087WYP2;Q8IZQ5;H0YE28;H3BV83 A0A087WYP2 106 118 C11orf31;SELH Selenoprotein H yes no 3 0.00034376 53.754 By MS/MS 1 0.86464 0.87675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86464 0.87675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8392100 4466600 3925600 0 0 0 0 0 0 8392100 4466600 3925600 0 0 0 0 0 0 0 0 0 9638 85 10029 47874 47734;47735 47734 2 FPEVEDVVMVNVR ______________________________ HKFPEVEDVVMVNVRSIAEMGAYVSLLEYN K F P V R S 0 1 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 5 0 0 13 0 1531.7705 P05198;G3V4T5 P05198 13 25 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 9.0169E-05 99.653 By MS/MS 1 0.86946 0.85779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86946 0.85779 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3173300 1612700 1560700 0 0 0 0 0 0 3173300 1612700 1560700 0 0 0 0 0 0 0 0 0 9639 1862 10030 47875 47736 47736 1 FPFELVK ELSGGARINRIFHERFPFELVKMEFDEKDL INRIFHERFPFELVKMEFDEKDLRREISYA R F P V K M 0 0 0 0 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 7 0 878.49019 P50570 P50570 370 376 DNM2 Dynamin-2 no no 2 0.028199 50.966 By matching By matching By MS/MS By matching By matching By matching 1 2 2 3 3 3 1.0288 1.0312 34.859 14 Median 0.82259 0.81682 NaN 1 0 Median 1.2293 1.0782 31.998 2 0 Median 1.0049 1.0312 10.017 2 0 Median 1.0328 0.90382 22.936 3 0 Median 2.376 2.3778 28.229 3 0 Plateau 0.98945 0.86104 16.981 3 0 Median 26259000 11518000 14741000 2343300 1279800 1063500 9814700 3895200 5919500 8402200 4094500 4307700 891320 465130 426180 3916100 1332700 2583400 891860 451080 440780 9640 2417 10031 47876;47877;47878;47879;47880;47881;47882;47883;47884;47885;47886;47887;47888;47889 47737;47738;47739 47738 3 FPFGIQQAK LPEDANPGPQTESSKFPFGIQQAKSHRNIK QTESSKFPFGIQQAKSHRNIKLLEDEPRSR K F P A K S 1 0 0 0 0 2 0 1 0 1 0 1 0 2 1 0 0 0 0 0 0 0 9 0 1034.5549 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;A0A1B0GTI6 A0A3F2YNW7 1986 1994 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.020926 38.792 By MS/MS By matching 1 1 0.9354 0.93729 4.9856 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81233 0.90482 NaN 1 0 Median 1.0771 0.97092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5314700 2539900 2774800 0 0 0 0 0 0 4912600 2353800 2558700 402170 186050 216120 0 0 0 0 0 0 9641 449 10032 47890;47891 47740 47740 1 FPFGISPAQSHR EDGAKSSEAIKESSKFPFGISPAQSHRNIK SSKFPFGISPAQSHRNIKILEDEPHSKDET K F P H R N 1 1 0 0 0 1 0 1 1 1 0 0 0 2 2 2 0 0 0 0 0 0 12 0 1342.6782 O14497;H0Y488;A0A1B0GTU5 O14497 1939 1950 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 9.158E-07 110.93 By MS/MS By matching By matching 3 2 1 0.93897 0.90953 27.028 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85747 0.90298 23.755 3 0 Median 0.96297 0.82773 14.347 2 0 Median NaN NaN NaN 0 0 Median 1.7074 1.447 NaN 1 0 Median 15729000 8981400 6747600 0 0 0 0 0 0 14534000 8428600 6105700 1046500 498730 547750 0 0 0 148240 54047 94190 9642 1480 10033 47892;47893;47894;47895;47896;47897 47741;47742 47741 2 FPGALQHHVTTEHFK GSQPFRCLYCAATFRFPGALQHHVTTEHFK FPGALQHHVTTEHFKQSETTFPCELCGELF R F P F K Q 1 0 0 0 0 1 1 1 3 0 1 1 0 2 1 0 2 0 0 1 0 0 15 0 1747.8794 F8WAI8;Q9NUA8 F8WAI8 1003 1017 ZBTB40 Zinc finger and BTB domain-containing protein 40 yes no 3;4 0.0012836 35.659 By MS/MS By MS/MS By matching 2 1 1 0.94645 1.0288 10.673 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91675 0.99334 17.795 2 0 Median 1.2335 1.0551 NaN 1 0 Median 0.8606 1.0031 NaN 1 0 Median NaN NaN NaN 0 0 Median 18769000 9291200 9477800 0 0 0 0 0 0 10092000 5192000 4900100 2731800 1130900 1600900 5945100 2968300 2976800 0 0 0 9643 1091 10034 47898;47899;47900;47901 47743;47744;47745;47746;47747;47748 47743 6 FPGINYPVLTPNLK PQMGDHTEVLKGIQKFPGINYPVLTPNLKG KFPGINYPVLTPNLKGFEAAVAAGAKEVVI K F P L K G 0 0 2 0 0 0 0 1 0 1 2 1 0 1 3 0 1 0 1 1 0 0 14 0 1571.8712 P35914 P35914 98 111 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 2 0.0018318 46.406 By MS/MS By matching By matching By matching 1 1 1 1 0.87912 0.79229 33.363 4 Median 0.59984 0.55648 NaN 1 0 Median 1.2935 1.0979 NaN 1 0 Median 0.64745 0.63154 NaN 1 0 Median 1.1937 0.99397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10823000 6628200 4194700 9826600 6100800 3725800 389980 204700 185280 518230 281210 237020 88089 41485 46604 0 0 0 0 0 0 9644 2252 10035 47902;47903;47904;47905 47749;47750 47749 2 FPGQLNADLR HLVSATMSGVTTCLRFPGQLNADLRKLAVN TTCLRFPGQLNADLRKLAVNMVPFPRLHFF R F P L R K 1 1 1 1 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1129.588 A0A0B4J269;Q13509;G3V2A3;P04350;M0R2D3;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 242 251 TUBB3;TUBB4A;TUBB;TUBB8;TUBB1;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2 5.5773E-07 158.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 6 5 4 4 1.1574 1.0167 60.177 23 Median 0.92892 0.8537 12.545 4 1 Median 0.99221 0.83908 41.636 5 0 Median 1.7091 1.647 NaN 1 0 Median 1.3441 1.1233 22.779 5 0 Median 4.9364 4.944 61.802 4 2 Linear 1.1705 1.2402 72.716 4 0 Linear 1315600000 583090000 732510000 551330000 269770000 281560000 426950000 212030000 214920000 96119000 15289000 80831000 102500000 34167000 68332000 59503000 16984000 42519000 79194000 34845000 44348000 9645 2634;1887;3849;2844;1849;3838;216 10036 47906;47907;47908;47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920;47921;47922;47923;47924;47925;47926;47927;47928;47929;47930;47931;47932;47933;47934;47935;47936;47937 47751;47752;47753;47754;47755;47756;47757;47758;47759;47760;47761;47762;47763;47764;47765;47766;47767;47768;47769;47770;47771;47772;47773;47774;47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798;47799;47800;47801;47802;47803;47804;47805;47806;47807;47808;47809;47810;47811;47812;47813;47814;47815;47816;47817;47818;47819 47804 69 FPGQLNADLRK HLVSATMSGVTTCLRFPGQLNADLRKLAVN TCLRFPGQLNADLRKLAVNMVPFPRLHFFM R F P R K L 1 1 1 1 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 11 1 1257.683 A0A0B4J269;Q13509;G3V2A3;P04350;M0R2D3;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 242 252 TUBB3;TUBB4A;TUBB;TUBB8;TUBB1;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2;3 2.725E-05 137.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 9 7 7 7 7 1.1216 1.0798 25.692 44 Median 0.96638 0.96048 8.8501 8 1 Median 1.2163 1.1113 10.221 8 0 Median 1.0078 1.0852 23.475 7 1 Median 1.1481 1.0774 13.32 7 0 Median 1.775 1.8147 38.701 7 0 Median 1.0871 0.9761 19.98 7 0 Median 1280100000 614250000 665860000 736660000 368070000 368590000 135250000 62725000 72521000 83820000 37860000 45960000 171730000 76835000 94895000 77376000 31114000 46262000 75276000 37644000 37632000 9646 2634;1887;3849;2844;1849;3838;216 10037 47938;47939;47940;47941;47942;47943;47944;47945;47946;47947;47948;47949;47950;47951;47952;47953;47954;47955;47956;47957;47958;47959;47960;47961;47962;47963;47964;47965;47966;47967;47968;47969;47970;47971;47972;47973;47974;47975;47976;47977;47978;47979;47980;47981;47982;47983 47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838;47839;47840;47841;47842;47843;47844;47845;47846;47847;47848;47849;47850;47851;47852;47853;47854;47855;47856;47857;47858;47859;47860;47861;47862;47863;47864;47865;47866;47867;47868;47869;47870;47871;47872;47873;47874;47875;47876;47877;47878;47879;47880;47881;47882;47883;47884;47885;47886;47887;47888;47889;47890;47891;47892;47893;47894;47895;47896;47897;47898;47899;47900;47901;47902;47903;47904;47905;47906;47907;47908;47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920 47902 101 FPGYDSESK GAVDGGLSIPHSTKRFPGYDSESKEFNAEV PHSTKRFPGYDSESKEFNAEVHRKHIMGQN R F P S K E 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 9 0 1028.4451 A0A2R8Y6J3;P46777 A0A2R8Y6J3 130 138 RPL5 60S ribosomal protein L5 yes no 2 0.0016121 79.596 By MS/MS By MS/MS 2 3 0.9187 0.80913 12.347 5 Median 0.90137 0.88356 12.446 2 0 Median 0.97063 0.83263 11.064 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25165000 13201000 11964000 6382900 3855400 2527500 18782000 9345500 9436600 0 0 0 0 0 0 0 0 0 0 0 0 9647 375 10038 47984;47985;47986;47987;47988 47921;47922;47923;47924;47925;47926 47924 6 FPGYDSESKEFNAEVHRK GAVDGGLSIPHSTKRFPGYDSESKEFNAEV YDSESKEFNAEVHRKHIMGQNVADYMRYLM R F P R K H 1 1 1 1 0 0 3 1 1 0 0 2 0 2 1 2 0 0 1 1 0 0 18 2 2139.0021 A0A2R8Y6J3;P46777 A0A2R8Y6J3 130 147 RPL5 60S ribosomal protein L5 yes no 4 9.5315E-05 40.515 By MS/MS By matching 2 1 0.85799 0.93371 15.742 3 Plateau 0.86899 0.93203 0.25391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73086 0.70961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26354000 12380000 13973000 25756000 12013000 13743000 0 0 0 0 0 0 597150 367070 230090 0 0 0 0 0 0 9648 375 10039 47989;47990;47991 47927 47927 1 FPLDYYSIPFPTPTTPLTGR PQVYGYDDLQMLQTRFPLDYYSIPFPTPTT YSIPFPTPTTPLTGRDGSLASNPYSGDLTK R F P G R D 0 1 0 1 0 0 0 1 0 1 2 0 0 2 5 1 4 0 2 0 0 0 20 0 2282.1623 F8W726;Q14157;H0Y5H6;H7C2T8 F8W726 841 860 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.042303 20.106 By MS/MS 1 0.51127 0.50858 NaN 1 Median 0.51127 0.50858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1696700 1103900 592790 1696700 1103900 592790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9649 1083 10040 47992 47928 47928 1 FPLFGGWK LLILDDSVEMEIRPRFPLFGGWKTHYIVGY EMEIRPRFPLFGGWKTHYIVGYNLPSYEYL R F P W K T 0 0 0 0 0 0 0 2 0 0 1 1 0 2 1 0 0 1 0 0 0 0 8 0 950.50142 P04843;B7Z4L4 P04843 320 327 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.0079765 64.803 By MS/MS By matching By MS/MS By matching By matching 4 3 2 2 1 1.0866 1.0347 28.466 12 Median 1.0671 1.0296 14.994 4 0 Median 1.0181 0.92517 8.9689 3 0 Median 0.97556 1.0307 6.8662 2 0 Median NaN NaN NaN 0 0 Median 1.7926 1.8417 33.793 2 0 Median 1.3006 1.1111 NaN 1 0 Median 29480000 14808000 14672000 13702000 6825600 6876700 4606400 2331000 2275400 10574000 5391900 5182600 0 0 0 294460 114030 180430 302700 145580 157120 9650 1853 10041 47993;47994;47995;47996;47997;47998;47999;48000;48001;48002;48003;48004 47929;47930;47931;47932;47933;47934;47935 47931 7 FPLLKPSPK LEYNPEHVSRSIYVKFPLLKPSPKLASLID RSIYVKFPLLKPSPKLASLIDGSSPVSILV K F P P K L 0 0 0 0 0 0 0 0 0 0 2 2 0 1 3 1 0 0 0 0 0 0 9 1 1025.6274 Q9NSE4 Q9NSE4 273 281 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.012278 70.919 By MS/MS By MS/MS 1 2 0.8734 0.8085 26.374 3 Median 0.54554 0.5732 NaN 1 0 Median 0.93374 0.88216 12.331 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21187000 12117000 9070200 6570300 4148700 2421600 14617000 7968500 6648600 0 0 0 0 0 0 0 0 0 0 0 0 9651 4103 10042 48005;48006;48007 47936;47937 47937 2 FPLTTESAMK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN YAIIKFPLTTESAMKKIEDNNTLVFIVDVK K F P M K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 10 0 1123.5583 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 81 90 RPL23A 60S ribosomal protein L23a yes no 2 0.00033827 109.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 4 3 3 0.97277 0.93134 53.921 18 Median 0.9519 0.88207 32.308 4 0 Median 0.93752 0.80462 27.838 3 2 Median 0.92195 0.86454 NaN 1 0 Median 1.0949 0.90774 106.3 4 0 Median 0.96568 1.0814 14.731 3 0 Median 1.2592 1.0391 15.205 3 0 Plateau 266580000 135080000 131510000 126920000 65861000 61055000 40956000 19741000 21216000 27054000 15389000 11665000 18153000 8967800 9185100 36617000 16993000 19623000 16889000 8126200 8763000 9652 544 10043;10044 48008;48009;48010;48011;48012;48013;48014;48015;48016;48017;48018;48019;48020;48021;48022;48023;48024;48025 47938;47939;47940;47941;47942;47943;47944;47945;47946;47947;47948;47949;47950;47951;47952;47953;47954;47955;47956;47957;47958;47959;47960;47961;47962;47963;47964;47965;47966;47967;47968;47969;47970;47971;47972;47973;47974;47975 47950 214 38 FPLTTESAMKK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN AIIKFPLTTESAMKKIEDNNTLVFIVDVKA K F P K K I 1 0 0 0 0 0 1 0 0 0 1 2 1 1 1 1 2 0 0 0 0 0 11 1 1251.6533 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 81 91 RPL23A 60S ribosomal protein L23a yes no 3 0.0035286 36.952 By MS/MS 1 0.96865 0.98539 NaN 1 Median 0.96865 0.98539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7356500 4168100 3188400 7356500 4168100 3188400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9653 544 10045 48026 47976 47976 1 FPNMVVAQVTR LQIALIALFSEMLYRFPNMVVAQVTRESVQ MLYRFPNMVVAQVTRESVQQAIASGITAQQ R F P T R E 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 3 0 0 11 0 1260.6649 Q92759 Q92759 338 348 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.00018718 76.827 By MS/MS By MS/MS By matching 2 1 1 0.88753 0.87902 31.418 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88753 0.87902 12.204 2 0 Median 1.6227 1.4086 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78397 0.6751 NaN 1 0 Median 21259000 11697000 9561900 0 0 0 0 0 0 16821000 9387500 7433800 4326800 2237800 2089000 0 0 0 110520 71422 39097 9654 3553 10046;10047 48027;48028;48029;48030 47977;47978;47979;47980 47980 1768 4 FPPEASGYLHIGHAK FVELPGAEMGKVTVRFPPEASGYLHIGHAK FPPEASGYLHIGHAKAALLNQHYQVNFKGK R F P A K A 2 0 0 0 0 0 1 2 2 1 1 1 0 1 2 1 0 0 1 0 0 0 15 0 1622.8205 P07814;V9GYZ6 P07814 202 216 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3;4 1.2019E-13 122.42 By MS/MS By MS/MS 5 4 0.86375 0.80112 13.693 9 Median 0.82733 0.80112 13.227 5 1 Median 0.92384 0.81959 16.283 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80808000 44435000 36372000 69890000 39030000 30859000 10918000 5405000 5513100 0 0 0 0 0 0 0 0 0 0 0 0 9655 1892 10048 48031;48032;48033;48034;48035;48036;48037;48038;48039 47981;47982;47983;47984;47985;47986;47987;47988;47989;47990 47989 10 FPPFFTLQPNVDTR ______________________________ RFPPFFTLQPNVDTRQKQLAAWCSLVLSFC R F P T R Q 0 1 1 1 0 1 0 0 0 0 1 0 0 3 3 0 2 0 0 1 0 0 14 0 1677.8515 Q9BRG1;K7EKV4;K7EP45 Q9BRG1 13 26 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 2 0.031182 26.043 By matching By matching By MS/MS 1 1 1 0.64822 0.6386 23.088 3 Median 0.64822 0.6386 NaN 1 0 Median 0.8664 0.73519 NaN 1 0 Median 0.50124 0.46818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1632500 1068000 564510 604080 383040 221040 232430 124660 107780 795990 560300 235690 0 0 0 0 0 0 0 0 0 9656 3795 10049 48040;48041;48042 47991 47991 1 FPPIQSIHVSQDER QRRLRLKDFRDAYPRFPPIQSIHVSQDERE RFPPIQSIHVSQDERECTMDLSEFMNPSPY R F P E R E 0 1 0 1 0 2 1 0 1 2 0 0 0 1 2 2 0 0 0 1 0 0 14 0 1651.8318 P51798;H0Y2M6 P51798 718 731 CLCN7 H(+)/Cl(-) exchange transporter 7 yes no 3 0.000761 55.841 By MS/MS By MS/MS 1 2 0.50464 0.48671 121.77 2 Median 1.1533 1.1513 NaN 1 0 Median 0.2208 0.20575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10922000 6230700 4690800 5897000 2745100 3151900 5024600 3485700 1538900 0 0 0 0 0 0 0 0 0 0 0 0 9657 2442 10050 48043;48044;48045 47992;47993;47994 47993 3 FPPPQELSQDSFGSQASSAPSMTSSK PQSQQSQQTAYSQQRFPPPQELSQDSFGSQ FGSQASSAPSMTSSKGGQEDMNLSLQSRPS R F P S K G 2 0 0 1 0 3 1 1 0 0 1 1 1 2 4 8 1 0 0 0 0 0 26 0 2697.2228 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 597 622 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 4.1126E-30 97.542 By MS/MS 1 0.44236 0.49084 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44236 0.49084 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7593900 5367000 2226800 0 0 0 0 0 0 7593900 5367000 2226800 0 0 0 0 0 0 0 0 0 9658 1480 10051 48046 47995 47995 1 FPPVVFYTPK QTRIKIGLNSKMPSRFPPVVFYTPKELGGL KMPSRFPPVVFYTPKELGGLGMLSMGHVLI R F P P K E 0 0 0 0 0 0 0 0 0 0 0 1 0 2 3 0 1 0 1 2 0 0 10 0 1193.6485 Q6P2Q9;I3L3Z8 Q6P2Q9 1311 1320 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0046436 52.482 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.69045 0.63273 19.097 5 Median 0.66891 0.63273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56457 0.62501 NaN 1 0 Median 0.79127 0.72008 NaN 1 0 Median 0.93258 0.95785 NaN 1 0 Median 0.69045 0.59989 NaN 1 0 Median 12950000 8211900 4738600 2315800 1504800 811020 0 0 0 8887000 5796400 3090700 924670 521890 402780 690180 333730 356440 132760 55053 77703 9659 3157 10052 48047;48048;48049;48050;48051 47996;47997;47998 47997 3 FPQALTSNTPLKPSNK LVTVKYLRLDRYHHRFPQALTSNTPLKPSN PQALTSNTPLKPSNKHMNSMSHLRLRTGLT R F P N K H 1 0 2 0 0 1 0 0 0 0 2 2 0 1 3 2 2 0 0 0 0 0 16 1 1741.9363 Q9Y2U8 Q9Y2U8 875 890 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 3.6763E-05 68.173 By MS/MS By matching 1 1 0.57723 0.60176 23.163 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44775 0.51085 NaN 1 0 Median 0.74414 0.70885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22131000 12032000 10099000 0 0 0 0 0 0 15914000 8620300 7293800 6216800 3411300 2805600 0 0 0 0 0 0 9660 4392 10053 48052;48053 47999 47999 1 FPQGPPSQMGSPMGSR GTPMMPDNGAVHNDRFPQGPPSQMGSPMGS PQGPPSQMGSPMGSRTGSETPQAPMSGVGP R F P S R T 0 1 0 0 0 2 0 3 0 0 0 0 2 1 4 3 0 0 0 0 0 0 16 0 1659.7497 Q8WXF1 Q8WXF1 467 482 PSPC1 Paraspeckle component 1 yes yes 2 3.093E-08 99.531 By MS/MS By MS/MS 1 1 0.49586 0.46044 22.465 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52347 0.53971 NaN 1 1 Median 0.4697 0.39281 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6010200 3708500 2301700 0 0 0 0 0 0 4959900 2958900 2001000 1050300 749590 300730 0 0 0 0 0 0 9661 3520 10054 48054;48055 48000;48001 48000 2 FPQLDSTSFANSR TTVGSAEKRAYLQARFPQLDSTSFANSRDT ARFPQLDSTSFANSRDTSFEQHVLWHTGGK R F P S R D 1 1 1 1 0 1 0 0 0 0 1 0 0 2 1 3 1 0 0 0 0 0 13 0 1468.6947 P49327;A0A0U1RQF0 P49327 1712 1724 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 1.3175E-41 225.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1 1 1.1346 0.99203 18.556 12 Median 0.89397 0.85798 0.22459 3 0 Median 1.2316 1.0125 5.6059 4 0 Median 0.78235 0.86028 23.187 2 0 Median 1.2782 1.1216 NaN 1 0 Median 1.4684 1.5306 NaN 1 0 Median 1.2925 1.0842 NaN 1 0 Median 376610000 185340000 191270000 278050000 141520000 136530000 76209000 33366000 42843000 15178000 7454800 7723500 575540 268120 307420 5738600 2393000 3345600 849520 332310 517220 9662 2377 10055 48056;48057;48058;48059;48060;48061;48062;48063;48064;48065;48066;48067 48002;48003;48004;48005;48006;48007;48008;48009;48010;48011;48012;48013;48014;48015;48016;48017;48018;48019 48003 18 FPQPIPVSR TSANSVDLPACFFLKFPQPIPVSRAFVQKL ACFFLKFPQPIPVSRAFVQKLQNCTGIPLF K F P S R A 0 1 0 0 0 1 0 0 0 1 0 0 0 1 3 1 0 0 0 1 0 0 9 0 1039.5815 Q15648 Q15648 307 315 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 2 0.012642 60.91 By MS/MS 1 0.52671 0.57924 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52671 0.57924 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5865100 3800900 2064200 0 0 0 0 0 0 5865100 3800900 2064200 0 0 0 0 0 0 0 0 0 9663 2961 10056 48068 48020 48020 1 FPQVQAFVR YAGAILEVCGCKLGRFPQVQAFVRSDKPKL GCKLGRFPQVQAFVRSDKPKLFRGLQIKAG R F P V R S 1 1 0 0 0 2 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 0 9 0 1090.5924 A0A3B3IT39;A0A087X1G7;O60613 A0A3B3IT39 101 109 SEP15 15 kDa selenoprotein yes no 2 0.00084619 94.662 By MS/MS By MS/MS 1 1 1.2345 1.1202 11.704 2 Median 1.0628 1.0312 NaN 1 0 Median 1.4339 1.2168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26178000 11819000 14360000 20085000 9370400 10715000 6093100 2448300 3644800 0 0 0 0 0 0 0 0 0 0 0 0 9664 432 10057 48069;48070 48021;48022;48023;48024 48023 4 FPSHFSSDLKDLLR QPIQIYEKIVSGKVRFPSHFSSDLKDLLRN RFPSHFSSDLKDLLRNLLQVDLTKRFGNLK R F P L R N 0 1 0 2 0 0 0 0 1 0 3 1 0 2 1 3 0 0 0 0 0 0 14 1 1660.8573 A0A087WVC4;A0A0A0MS54;P22694;P17612 P17612 258 271 PRKACB;PRKACA cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha no no 3 0.0016502 37.55 By MS/MS By matching By matching 1 1 1 0.85601 0.87305 14.909 3 Plateau 0.92478 0.99063 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67697 0.76943 NaN 1 0 Median 0.85601 0.76121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3975300 1946800 2028500 3069800 1537400 1532400 0 0 0 785850 350550 435300 119600 58872 60729 0 0 0 0 0 0 9665 2044;40 10058 48071;48072;48073 48025 48025 1 FPSINHD RSGSSSPDSEITELKFPSINHD________ DSEITELKFPSINHD_______________ K F P H D - 0 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 828.37662 P17812;B4E1E0 P17812 585 591 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.034996 60.788 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4063200 0 0 0 0 0 4063200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9666 2046 10059 48074 48026 48026 1 FPSLLTHNENMVAK QIPRILGPGLNKAGKFPSLLTHNENMVAKV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K F P A K V 1 0 2 0 0 0 1 0 1 0 2 1 1 1 1 1 1 0 0 1 0 0 14 0 1599.8079 P62906 P62906 134 147 RPL10A 60S ribosomal protein L10a yes yes 2;3 6.2257E-11 171.67 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 5 3 3 5 5 0.91761 0.82055 44.849 24 Median 0.85734 0.79924 3.2781 3 0 Median 0.63451 0.55976 82.212 5 0 Median 0.97592 0.91527 14.061 3 0 Plateau 0.75876 0.62916 44.824 3 0 Median 0.92467 0.95801 5.4326 5 0 Median 0.97446 0.80356 24.592 5 0 Median 683510000 350800000 332720000 477880000 245050000 232830000 20073000 10695000 9378200 60477000 32417000 28059000 11122000 6216400 4905600 76568000 39193000 37375000 37392000 17219000 20173000 9667 2608 10060;10061 48075;48076;48077;48078;48079;48080;48081;48082;48083;48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095;48096;48097;48098 48027;48028;48029;48030;48031;48032;48033;48034;48035;48036;48037;48038;48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049 48038 1269 23 FPSSGPVTPQPTALTFAK ITKGTQSLPTASASKFPSSGPVTPQPTALT SGPVTPQPTALTFAKSSWARQESLQERKQA K F P A K S 2 0 0 0 0 1 0 1 0 0 1 1 0 2 4 2 3 0 0 1 0 0 18 0 1844.9672 Q9Y679 Q9Y679 360 377 AUP1 Ancient ubiquitous protein 1 yes yes 2 1.1932E-05 51.774 By MS/MS By matching By matching 1 1 1 0.70871 0.66251 25.511 3 Median 0.70871 0.66251 NaN 1 0 Median 0.85173 0.74703 NaN 1 0 Median 0.41024 0.45789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5515200 2980400 2534900 3778500 2128000 1650500 320810 169290 151520 1415900 683060 732880 0 0 0 0 0 0 0 0 0 9668 4482 10062 48099;48100;48101 48050;48051 48051 2 FPTLTNINENNPTLLNPIKR YSTRMILLTLTGQPRFPTLTNINENNPTLL NINENNPTLLNPIKRLAAGSLFAGFLITNN R F P K R L 0 1 5 0 0 0 1 0 0 2 3 1 0 1 3 0 3 0 0 0 0 0 20 1 2308.2539 P03915 P03915 437 456 MT-ND5 NADH-ubiquinone oxidoreductase chain 5 yes yes 3 3.0149E-19 111.77 By MS/MS By matching By MS/MS 2 1 1 0.65676 0.68313 25.032 4 Median 0.65676 0.67539 24.194 2 0 Median 1.0142 0.95058 NaN 1 0 Median 0.50393 0.58232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14192000 8492400 5699300 11052000 6725100 4327200 1092600 531790 560830 2046800 1235600 811260 0 0 0 0 0 0 0 0 0 9669 1840 10063 48102;48103;48104;48105 48052;48053 48052 2 FPTLWSGAR VSKDRYGGQPLFSEKFPTLWSGARSTYGVT PLFSEKFPTLWSGARSTYGVTKGKVCFEAK K F P A R S 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 1 0 0 0 0 9 0 1033.5345 Q1KMD3;H3BQZ7 Q1KMD3 274 282 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.00039714 133.6 By matching By MS/MS By MS/MS 1 4 4 1.0415 0.89177 13.783 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0989 0.92587 NaN 1 0 Median 0.82014 0.82407 17.846 4 0 Median 1.063 0.89391 13.621 4 0 Median 45600000 24425000 21175000 0 0 0 0 0 0 0 0 0 317600 158780 158810 42761000 22983000 19777000 2521400 1282900 1238500 9670 3002 10064 48106;48107;48108;48109;48110;48111;48112;48113;48114 48054;48055;48056;48057;48058;48059;48060;48061;48062;48063 48058 10 FPVAPLIPYPLITK PRKKKKEKKEDIFRRFPVAPLIPYPLITKE RFPVAPLIPYPLITKEDINAIEMEEDKRDL R F P T K E 1 0 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 14 0 1567.9378 P49756;H0YE46 P49756 248 261 RBM25 RNA-binding protein 25 yes no 2 0.0082641 35.414 By MS/MS By matching 2 2 0.52129 0.59564 9.1946 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53855 0.582 0.33755 2 0 Median NaN NaN NaN 0 0 Median 0.49238 0.50207 5.9394 2 0 Median NaN NaN NaN 0 0 Median 4846900 3172200 1674700 0 0 0 0 0 0 4318900 2844300 1474700 0 0 0 527990 327910 200080 0 0 0 9671 2397 10065 48115;48116;48117;48118 48064 48064 1 FPVLAQSSGTGKPLESWINK EQQLHASNRPALAAKFPVLAQSSGTGKPLE QSSGTGKPLESWINKTPNTEQQTPLFQVIS K F P N K T 1 0 1 0 0 1 1 2 0 1 2 2 0 1 2 3 1 1 0 1 0 0 20 1 2158.1423 Q8IZD4;F5GZK9 Q8IZD4 477 496 DCP1B mRNA-decapping enzyme 1B yes no 3 0.019737 16.752 By MS/MS 1 0.4342 0.49 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4342 0.49 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088300 2493600 1594700 0 0 0 0 0 0 4088300 2493600 1594700 0 0 0 0 0 0 0 0 0 9672 3349 10066 48119 48065 48065 1 FPVTDAVNK QACTGGIIDPSTGERFPVTDAVNKGLVDKI PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R F P N K G 1 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 9 0 989.5182 Q15149;H0YDN1 Q15149 4467 4475 PLEC Plectin yes no 2 0.0038584 79.713 By MS/MS 2 0.88431 0.78189 42.08 2 Median NaN NaN NaN 0 0 Median 0.88431 0.78189 42.08 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20125000 11725000 8400000 0 0 0 20125000 11725000 8400000 0 0 0 0 0 0 0 0 0 0 0 0 9673 2933 10067 48120;48121 48066;48067 48066 2 FPVVAMGVLK SELVAELSTLYQCIRFPVVAMGVLKWVDWT YQCIRFPVVAMGVLKWVDWTVSEPRYFQLQ R F P L K W 1 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 3 0 0 10 0 1059.6151 H0UI80;X6RLT1;Q8IXH7 H0UI80 429 438 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.00078485 71.342 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.95567 0.86389 25.075 5 Median 1.1055 1.0685 20.507 2 0 Median NaN NaN NaN 0 0 Median 0.61311 0.6172 NaN 1 0 Median 0.98217 0.86389 NaN 1 0 Median 0.82363 0.7995 NaN 1 0 Median NaN NaN NaN 0 0 Median 8450200 4728200 3722000 3288100 1500100 1788100 0 0 0 4703600 2995600 1707900 190290 97629 92663 268190 134880 133320 0 0 0 9674 1138 10068 48122;48123;48124;48125;48126 48068;48069;48070;48071 48070 4 FQADGTYTLIIR NLAKFNQVLDQFGEKFQADGTYTLIIRLRH GEKFQADGTYTLIIRLRHNVIKTGVRMISL K F Q I R L 1 1 0 1 0 1 0 1 0 2 1 0 0 1 0 0 2 0 1 0 0 0 12 0 1396.7351 O43242 O43242 386 397 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0049172 42.336 By MS/MS 1 0.98862 0.96783 NaN 1 Median 0.98862 0.96783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4226100 1840000 2386100 4226100 1840000 2386100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9675 1560 10069 48127 48072;48073;48074 48072 3 FQAFDWGSSAK VQNMLHWSQAVKFQKFQAFDWGSSAKNYFH KFQKFQAFDWGSSAKNYFHYNQSYPPTYNV K F Q A K N 2 0 0 1 0 1 0 1 0 0 0 1 0 2 0 2 0 1 0 0 0 0 11 0 1242.5669 A0A0A0MT32;P38571 A0A0A0MT32 189 199 LIPA Lysosomal acid lipase/cholesteryl ester hydrolase yes no 2 0.00047715 68.893 By MS/MS By matching 1 1 1.4769 1.3495 38.974 2 Median 1.9033 1.7777 NaN 1 0 Median 1.1461 1.0244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6210000 2053400 4156600 5792700 1853900 3938800 417240 199470 217760 0 0 0 0 0 0 0 0 0 0 0 0 9676 185 10070 48128;48129 48075 48075 1 FQASQGENLEGK HFRNPQRRIRRWLRRFQASQGENLEGKYLS LRRFQASQGENLEGKYLSFEAEEKLAEWVL R F Q G K Y 1 0 1 0 0 2 2 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 0 1306.6153 Q7Z3K3 Q7Z3K3 1010 1021 POGZ Pogo transposable element with ZNF domain yes yes 2 0.00048458 77.379 By MS/MS 1 1.0397 1.0926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0397 1.0926 NaN 1 0 Median NaN NaN NaN 0 0 Median 3745400 1758000 1987500 0 0 0 0 0 0 0 0 0 0 0 0 3745400 1758000 1987500 0 0 0 9677 3241 10071 48130 48076;48077 48077 2 FQDDNVEGDK LLSRFGGSDRLRQFKFQDDNVEGDKVSKKD LRQFKFQDDNVEGDKVSKKDEIELAMQQIC K F Q D K V 0 0 1 3 0 1 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 10 0 1165.4887 Q92621 Q92621 1733 1742 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0037998 55.461 By MS/MS By matching 1 1 0.99901 1.0062 4.2043 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93045 1.0366 NaN 1 0 Median 1.0726 0.97676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5520600 2660600 2860000 0 0 0 0 0 0 4498400 2201000 2297400 1022100 459570 562550 0 0 0 0 0 0 9678 3547 10072 48131;48132 48078;48079 48079 2 FQDDNVEGDKVSK LLSRFGGSDRLRQFKFQDDNVEGDKVSKKD FKFQDDNVEGDKVSKKDEIELAMQQICANV K F Q S K K 0 0 1 3 0 1 1 1 0 0 0 2 0 1 0 1 0 0 0 2 0 0 13 1 1479.6842 Q92621 Q92621 1733 1745 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 0.0021292 56.359 By MS/MS By MS/MS 2 2 1.0991 1.1402 15.925 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1542 1.3289 7.2952 2 0 Median 1.0937 1.0189 1.5334 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10500000 4804600 5695700 0 0 0 0 0 0 9316800 4187900 5129000 1183400 616680 566730 0 0 0 0 0 0 9679 3547 10073 48133;48134;48135;48136 48080;48081;48082;48083;48084;48085 48080 6 FQDELESGKRPK EKRAKLREIELKVMKFQDELESGKRPKKPG VMKFQDELESGKRPKKPGQSFQEQVEHYRD K F Q P K K 0 1 0 1 0 1 2 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 12 2 1432.731 O15042;E7ET15;H7C4V2 O15042 854 865 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.010539 27.409 By matching By MS/MS 1 1 0.88889 1.0275 20.02 2 Median 0.78467 0.89189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 1.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median 2034800 1140800 893950 357610 220280 137330 0 0 0 0 0 0 0 0 0 1677200 920530 756620 0 0 0 9680 1515 10074 48137;48138 48086 48086 1 FQDGDLTLYQSNTILR EGSLKASCLYGQLPKFQDGDLTLYQSNTIL QDGDLTLYQSNTILRHLGRTLGLYGKDQQE K F Q L R H 0 1 1 2 0 2 0 1 0 1 3 0 0 1 0 1 2 0 1 0 0 0 16 0 1882.9425 P09211;A8MX94;A0A087X2E9 P09211 56 71 GSTP1 Glutathione S-transferase P yes no 2;3 2.5136E-36 213.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 1 2 2 1.1521 1.0245 14.235 17 Median 1.0725 1.0217 7.1472 7 1 Median 1.2102 1.0245 14.487 5 0 Median 1.0554 1.0139 NaN 1 0 Median 1.2061 0.98734 8.8067 2 0 Median 1.3269 1.3675 13.893 2 0 Median NaN NaN NaN 0 0 Median 1627600000 721460000 906180000 1415200000 626950000 788280000 180390000 79976000 100420000 15564000 7321000 8243300 1471500 654180 817290 14981000 6555700 8424900 0 0 0 9681 1912 10075 48139;48140;48141;48142;48143;48144;48145;48146;48147;48148;48149;48150;48151;48152;48153;48154;48155 48087;48088;48089;48090;48091;48092;48093;48094;48095;48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106;48107;48108;48109;48110;48111 48105 25 FQDGVLEPDFPR CQGKTYLFKGSQYWRFQDGVLEPDFPRNIS YWRFQDGVLEPDFPRNISDGFGGIPDDAHL R F Q P R N 0 1 0 2 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 12 0 1418.683 CON__Q3ZBS7 CON__Q3ZBS7 226 237 yes yes 2 7.6475E-11 139.43 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 0.16148 0.15814 103.62 7 Median 0.16148 0.15814 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.078457 0.078195 NaN 1 1 Median 0.026788 0.022386 NaN 1 1 Median 0.27116 0.28578 70.753 4 4 Median NaN NaN NaN 0 0 Median 30627000 27376000 3251200 4193200 3764600 428550 0 0 0 15752000 14782000 969110 1219500 1171900 47524 9462600 7656600 1806000 0 0 0 + 9682 783 10076 48156;48157;48158;48159;48160;48161;48162 48112;48113;48114;48115;48116;48117;48118;48119;48120 48113 9 FQDLGAAYEVLSDSEK LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE QDLGAAYEVLSDSEKRKQYDTYGEEGLKDG K F Q E K R 2 0 0 2 0 1 2 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 16 0 1770.8312 Q9UBS4 Q9UBS4 67 82 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2 3.4417E-10 119.39 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.2872 1.086 37.031 5 Median NaN NaN NaN 0 0 Median 1.0126 0.86953 NaN 1 0 Median 1.052 1.086 NaN 1 0 Median 1.2872 1.0824 NaN 1 0 Median 1.4586 1.4388 NaN 1 0 Median 2.7768 2.2742 NaN 1 0 Median 28769000 13274000 15495000 0 0 0 1602500 824270 778220 24971000 11600000 13370000 830850 331290 499560 1118400 441420 676970 246240 76555 169680 9683 4246 10077 48163;48164;48165;48166;48167 48121;48122 48121 2 FQDLGAAYEVLSDSEKR LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE DLGAAYEVLSDSEKRKQYDTYGEEGLKDGH K F Q K R K 2 1 0 2 0 1 2 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 17 1 1926.9323 Q9UBS4 Q9UBS4 67 83 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2;3 1.9155E-07 72.089 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.2009 1.2378 68.21 6 Median 1.3407 1.4355 NaN 1 0 Median 1.0234 0.98941 32.887 2 0 Median 0.47518 0.54104 115.83 2 1 Median 1.4529 1.2773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30338000 18376000 11962000 2033800 1024700 1009100 2294200 1159200 1135000 25084000 15818000 9265400 925970 373670 552310 0 0 0 0 0 0 9684 4246 10078 48168;48169;48170;48171;48172;48173 48123;48124;48125 48124 3 FQDLGVK QTPLLRATVASSTQKFQDLGVKNSEPSARH TVASSTQKFQDLGVKNSEPSARHVDSLSQR K F Q V K N 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 805.4334 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 63 69 SEPT9 Septin-9 yes no 2 0.020057 60.788 By matching By matching By MS/MS 1 1 2 1.251 1.1146 10.408 4 Median NaN NaN NaN 0 0 Median 1.3401 1.1612 NaN 1 0 Median 1.0651 1.0698 NaN 1 0 Median 1.2824 1.0681 16.53 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21577000 10185000 11393000 0 0 0 1150900 404320 746540 16683000 8048300 8634400 3743700 1732100 2011700 0 0 0 0 0 0 9685 4276 10079 48174;48175;48176;48177 48126;48127;48128 48126 3 FQDSEFSSSQGEDEKTSQTSLTASINK HTRSGNLKRPKIGKRFQDSEFSSSQGEDEK DEKTSQTSLTASINKLESTARPSESSEEFL R F Q N K L 1 0 1 2 0 3 3 1 0 1 1 2 0 2 0 7 3 0 0 0 0 0 27 1 2950.3316 D6RB01;Q9Y6X4 D6RB01 282 308 FAM169A Soluble lamin-associated protein of 75 kDa yes no 3 8.9817E-28 89.565 By matching By MS/MS By matching By matching 1 2 2 1 0.94019 0.95513 35.148 6 Median 0.73449 0.77517 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82694 0.93973 9.5017 2 0 Median 1.6517 1.5934 35.68 2 0 Median NaN NaN NaN 0 0 Median 1.0022 0.90769 NaN 1 0 Median 43100000 22295000 20805000 3011500 1766900 1244600 0 0 0 37475000 19411000 18064000 1874100 747780 1126300 0 0 0 739220 369200 370020 9686 814 10080 48178;48179;48180;48181;48182;48183 48129;48130 48130 2 FQDVGPQAPVGSVYQK KASGANYSFHKESGRFQDVGPQAPVGSVYQ QDVGPQAPVGSVYQKTNAVSEIKRVGKDSF R F Q Q K T 1 0 0 1 0 3 0 2 0 0 0 1 0 1 2 1 0 0 1 3 0 0 16 0 1718.8628 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 149 164 DBNL Drebrin-like protein yes no 2 1.0141E-05 85.288 By MS/MS By matching By matching By matching 5 1 1 1 0.56446 0.61322 38.584 7 Median 0.71628 0.65386 25.878 4 0 Linear 1.005 0.88161 NaN 1 0 Median 0.56446 0.61322 NaN 1 0 Median 1.2608 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64457000 41015000 23442000 56232000 35638000 20594000 267520 146530 120990 7518300 4993700 2524600 439540 237700 201840 0 0 0 0 0 0 9687 4298 10081 48184;48185;48186;48187;48188;48189;48190;48191 48131;48132;48133;48134;48135;48136;48137 48132 7 FQDVSFAYPNRPDRPVLK SPGTLAPTTLQGVVKFQDVSFAYPNRPDRP VSFAYPNRPDRPVLKGLTFTLRPGEVTALV K F Q L K G 1 2 1 2 0 1 0 0 0 0 1 1 0 2 3 1 0 0 1 2 0 0 18 2 2148.1116 X5CMH5;A0A0G2JLV0;A0A087WYD6;Q03519;A0A140T9S0;E7ENX8 X5CMH5 470 487 TAP2 Antigen peptide transporter 2 yes no 3;4 2.8236E-06 56.959 By MS/MS By matching 2 1 0.59625 0.5752 22.376 3 Median 0.55043 0.531 11.309 2 0 Median 0.79082 0.76259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30004000 18826000 11178000 27281000 17606000 9675000 2723200 1220100 1503200 0 0 0 0 0 0 0 0 0 0 0 0 9688 4564 10082 48192;48193;48194 48138;48139 48138 1 FQEAKGDSPQEK PKRPRSAYNVYVAERFQEAKGDSPQEKLKT AERFQEAKGDSPQEKLKTVKENWKNLSDSE R F Q E K L 1 0 0 1 0 2 2 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 12 1 1362.6416 Q00059;H7BYN3 Q00059 170 181 TFAM Transcription factor A, mitochondrial yes no 2;3 0.0065249 53.683 By matching By MS/MS By MS/MS 1 1 2 0.85615 0.89109 11.044 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88993 0.90969 NaN 1 0 Median 1.1568 1.0406 NaN 1 0 Median 0.78979 0.8346 6.3402 2 0 Median NaN NaN NaN 0 0 Median 5061600 2601100 2460500 0 0 0 0 0 0 629180 346730 282440 1090500 514390 576060 3342000 1739900 1602000 0 0 0 9689 2673 10083 48195;48196;48197;48198 48140;48141;48142 48140 3 FQEDIISIWNK FMVGEEICGAVVSVRFQEDIISIWNKTASD VSVRFQEDIISIWNKTASDQATTARIRDTL R F Q N K T 0 0 1 1 0 1 1 0 0 3 0 1 0 1 0 1 0 1 0 0 0 0 11 0 1391.7085 O60573;C9JEL3;B9A044;B8ZZ50;B8ZZL3;B4E1E4;B9A023 O60573 175 185 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 2 0.008703 40.002 By MS/MS By matching 1 1 1.3731 1.2427 29.894 2 Median 1.0326 1.0059 NaN 1 0 Median 1.8258 1.5352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12266000 6026100 6240200 2765100 1410500 1354600 9501300 4615600 4885700 0 0 0 0 0 0 0 0 0 0 0 0 9690 1622 10084 48199;48200 48143;48144 48144 2 FQEEANIYAVK WFGNKRIRYKKNIGKFQEEANIYAVKTAVS NIGKFQEEANIYAVKTAVSVTQGGHSRTSS K F Q V K T 2 0 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 11 0 1310.6507 P40425 P40425 309 319 PBX2 Pre-B-cell leukemia transcription factor 2 yes yes 2 0.00022785 98.033 By MS/MS By MS/MS 2 1 0.9481 0.91294 38.107 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73156 0.72841 31.933 2 0 Median 1.3802 1.2396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27202000 12879000 14324000 0 0 0 0 0 0 19221000 9654100 9567100 7981200 3224400 4756800 0 0 0 0 0 0 9691 2286 10085 48201;48202;48203 48145;48146;48147 48146 3 FQEEANLYAAK WFGNKRIRYKKNIGKFQEEANLYAAKTAVT NIGKFQEEANLYAAKTAVTAAHAVAAAVQN K F Q A K T 3 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 11 0 1282.6194 Q5JS98;P40426 Q5JS98 321 331 PBX3 Pre-B-cell leukemia transcription factor 3 yes no 2 0.00045312 107.57 By MS/MS By MS/MS 2 1 0.79506 0.82048 36.725 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59664 0.65811 31.185 2 1 Median 1.2918 1.0945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37990000 20593000 17397000 0 0 0 0 0 0 34525000 19160000 15365000 3464800 1432900 2031900 0 0 0 0 0 0 9692 2287 10086 48204;48205;48206 48148;48149 48148 2 FQEFSNIVIPLIK ISCAADILKATKEDRFQEFSNIVIPLIKKN DRFQEFSNIVIPLIKKNSLESSGVRTTKNE R F Q I K K 0 0 1 0 0 1 1 0 0 3 1 1 0 2 1 1 0 0 0 1 0 0 13 0 1546.8759 Q5VYK3;J3KN16;F6XAQ5 Q5VYK3 1651 1663 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.020689 30.564 By MS/MS By matching 1 1 0.87014 0.89156 2.0883 2 Median 0.91255 0.87849 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82969 0.90482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4134400 2100200 2034200 3900600 1981500 1919100 0 0 0 233840 118700 115130 0 0 0 0 0 0 0 0 0 9693 3116 10087 48207;48208 48150 48150 1 FQEHIIQAPK VKTTEKKELCELKPKFQEHIIQAPKPVEAI ELKPKFQEHIIQAPKPVEAIKRPSPDEPMT K F Q P K P 1 0 0 0 0 2 1 0 1 2 0 1 0 1 1 0 0 0 0 0 0 0 10 0 1209.6506 Q9UHD1;E9PPQ5;E9PIZ4;E9PSD5 Q9UHD1 92 101 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 3 0.04915 16.53 By MS/MS 1 0.99513 0.86873 NaN 1 Median NaN NaN NaN 0 0 Median 0.99513 0.86873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5256300 1705500 3550800 0 0 0 5256300 1705500 3550800 0 0 0 0 0 0 0 0 0 0 0 0 9694 4275 10088 48209 48151 48151 1 FQEHIIQAPKPVEAIK VKTTEKKELCELKPKFQEHIIQAPKPVEAI QEHIIQAPKPVEAIKRPSPDEPMTNLELKI K F Q I K R 2 0 0 0 0 2 2 0 1 3 0 2 0 1 2 0 0 0 0 1 0 0 16 1 1847.0305 Q9UHD1;E9PPQ5;E9PIZ4;E9PSD5 Q9UHD1 92 107 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2;3;4 3.4992E-10 100.77 By MS/MS By MS/MS By matching By matching 7 5 2 1 0.74424 0.72456 21.831 14 Median 0.79245 0.8063 10.534 6 2 Median 0.61686 0.564 10.4 5 0 Median 0.79954 0.88985 7.5137 2 0 Median 0.67255 0.59888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 271750000 148090000 123650000 174900000 93878000 81023000 86726000 48444000 38282000 6122800 3260000 2862800 3995500 2510700 1484900 0 0 0 0 0 0 9695 4275 10089 48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224 48152;48153;48154;48155;48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167 48166 16 FQELIFEDFAR LLKKLAPTCKSELPRFQELIFEDFARFILV ELPRFQELIFEDFARFILVENTYEEVVLQT R F Q A R F 1 1 0 1 0 1 2 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 11 0 1413.6929 Q96TA1 Q96TA1 519 529 FAM129B Niban-like protein 1 yes yes 2 0.00029355 72.643 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.3171 1.1381 39.343 5 Median 1.1447 1.1217 NaN 1 0 Median 1.3171 1.1381 NaN 1 1 Median 1.3926 1.4906 NaN 1 0 Median 1.1122 0.91494 NaN 1 0 Median 2.3868 2.5301 NaN 1 1 Median NaN NaN NaN 0 0 Median 12055000 5417300 6637600 2625100 1187200 1437900 7443000 3454300 3988700 1240500 543460 697020 91566 43755 47811 654740 188560 466180 0 0 0 9696 3743 10090 48225;48226;48227;48228;48229 48168;48169;48170;48171;48172;48173 48169 6 FQELKDVQDELR LSGGARSQAASILTKFQELKDVQDELRIKE LTKFQELKDVQDELRIKENELRALEEELAG K F Q L R I 0 1 0 2 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1518.7678 O95347 O95347 678 689 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 8.5928E-05 141.95 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 1.1301 1.1776 28.594 7 Median 1.3476 1.4044 24.918 2 0 Median 0.79581 0.7634 NaN 1 0 Median 1.1523 1.3065 0.88375 2 0 Median 0.92315 0.88716 15.53 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64734000 28868000 35866000 26642000 10867000 15775000 701150 403510 297640 34978000 16452000 18526000 2413000 1145400 1267600 0 0 0 0 0 0 9697 1766 10091 48230;48231;48232;48233;48234;48235;48236 48174;48175;48176;48177;48178;48179;48180 48176 7 FQELLASPAYR SAAQRQQLLEEERTRFQELLASPAYRASPL ERTRFQELLASPAYRASPLVAIGQTLARQM R F Q Y R A 2 1 0 0 0 1 1 0 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1293.6717 Q9NSI2 Q9NSI2 197 207 FAM207A Protein FAM207A yes yes 2 0.00015601 82.287 By MS/MS By MS/MS 1 1 0.9126 0.91986 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9126 0.91986 NaN 1 0 Median NaN NaN NaN 0 0 Median 18568000 9824000 8744000 0 0 0 0 0 0 0 0 0 0 0 0 18568000 9824000 8744000 0 0 0 9698 4104 10092 48237;48238 48181;48182;48183 48183 3 FQELSQPR DAQKGGETPGSEQWKFQELSQPRSHTSLKD PGSEQWKFQELSQPRSHTSLKDELSDVSQG K F Q P R S 0 1 0 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 8 0 1003.5087 A0A087X2D8;O60271;D6RHI8 A0A087X2D8 234 241 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.0070958 89.752 By MS/MS By MS/MS 1 1 1.4853 1.501 NaN 1 Median 1.4853 1.501 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3193000 1511800 1681200 3193000 1511800 1681200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9699 134 10093 48239;48240 48184;48185 48185 2 FQESEERPK KLAELKNLGQPIKIRFQESEERPKLFEELG QPIKIRFQESEERPKLFEELGKQIQQYMKI R F Q P K L 0 1 0 0 0 1 3 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 1 1148.5462 P34932 P34932 689 697 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.033317 52.716 By matching By MS/MS By matching By matching 1 2 1 1 1.0664 1.0572 24.262 5 Median 1.2486 1.2902 NaN 1 0 Median 1.0779 1.0479 3.0307 2 0 Median 0.91922 1.0572 NaN 1 0 Median 0.69564 0.66852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5382900 2543300 2839600 617310 277420 339890 4430100 2086900 2343200 176280 89035 87247 159110 89904 69209 0 0 0 0 0 0 9700 2230 10094 48241;48242;48243;48244;48245 48186 48186 1 FQESNDKTQLIFGSVTNIPAK LCFLVESQLQLRCVKFQESNDKTQLIFGSV KTQLIFGSVTNIPAKDAAPVEKIDTMLVLE K F Q A K D 1 0 2 1 0 2 1 1 0 2 1 2 0 2 1 2 2 0 0 1 0 0 21 1 2336.2012 Q9H1A4 Q9H1A4 457 477 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 3 0.030085 13.731 By MS/MS 1 0.81561 0.93801 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81561 0.93801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2935700 1770500 1165200 0 0 0 0 0 0 2935700 1770500 1165200 0 0 0 0 0 0 0 0 0 9701 3933 10095 48246 48187 48187 1 FQETEFLSPPR PLDVENIQKRIDQSKFQETEFLSPPRKVPR DQSKFQETEFLSPPRKVPRLSEKSVEERDS K F Q P R K 0 1 0 0 0 1 2 0 0 0 1 0 0 2 2 1 1 0 0 0 0 0 11 0 1349.6616 P42166 P42166 417 427 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 5.5908E-05 153.05 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 0.85405 0.74141 18.959 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72425 0.75723 19.342 2 0 Median 1.0001 0.86515 21.827 2 0 Median 0.99545 1.0549 NaN 1 1 Median 0.82927 0.69924 0.29259 2 0 Median 55642000 30741000 24900000 0 0 0 0 0 0 40564000 23233000 17332000 11130000 5565900 5563800 2632500 1289100 1343400 1314900 653630 661240 9702 2306 10096 48247;48248;48249;48250;48251;48252;48253 48188;48189;48190;48191;48192;48193;48194;48195;48196 48191 9 FQETGFFK QMMLPESVAIVCSPKFQETGFFKLTDHGLE AIVCSPKFQETGFFKLTDHGLEEISSCRQK K F Q F K L 0 0 0 0 0 1 1 1 0 0 0 1 0 3 0 0 1 0 0 0 0 0 8 0 1002.4811 O95630 O95630 371 378 STAMBP STAM-binding protein yes yes 2 0.023052 44.447 By matching By matching By MS/MS By matching 1 1 1 2 1.4646 1.2872 8.74 5 Median 1.538 1.4663 NaN 1 0 Median 1.5514 1.3819 NaN 1 0 Median 1.1792 1.1623 NaN 1 0 Median 1.4542 1.2856 0.17632 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11482000 5160200 6321400 3467200 1359500 2107700 485710 205020 280690 5063200 2274000 2789100 2465400 1321600 1143800 0 0 0 0 0 0 9703 1784 10097 48254;48255;48256;48257;48258 48197 48197 1 FQETSDEFEAAR PNMKAMEKLESVRDKFQETSDEFEAARKRA RDKFQETSDEFEAARKRAKKAKQAFEQIKK K F Q A R K 2 1 0 1 0 1 3 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 12 0 1428.6157 Q14683;G8JLG1;V9GY57 Q14683 1038 1049 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00012009 90.108 By matching By MS/MS By MS/MS 1 1 1 1.1282 0.99049 16.93 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78174 0.85954 NaN 1 0 Median 1.1282 0.99049 NaN 1 0 Median 1.1556 1.2042 NaN 1 0 Median NaN NaN NaN 0 0 Median 11726000 5465800 6260600 0 0 0 0 0 0 3813700 2120800 1692900 2107100 901150 1205900 5805600 2443900 3361700 0 0 0 9704 2889 10098 48259;48260;48261 48198;48199;48200 48198 3 FQEYHIQQNEALAAK CLQKYLKMTQRISMRFQEYHIQQNEALAAK FQEYHIQQNEALAAKAGLLGQPR_______ R F Q A K A 3 0 1 0 0 3 2 0 1 1 1 1 0 1 0 0 0 0 1 0 0 0 15 0 1788.8795 Q9Y5J7 Q9Y5J7 67 81 TIMM9 Mitochondrial import inner membrane translocase subunit Tim9 yes yes 2;3 2.2049E-09 114.72 By MS/MS By MS/MS By matching 2 4 2 1.4613 1.2033 25.392 8 Median 1.5399 1.4101 50.881 2 0 Median 1.4751 1.2141 6.5161 4 2 Median 0.95972 0.95961 14.572 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62126000 25684000 36442000 15268000 7102500 8165400 43799000 17263000 26536000 3059200 1318800 1740400 0 0 0 0 0 0 0 0 0 9705 4459 10099 48262;48263;48264;48265;48266;48267;48268;48269 48201;48202;48203;48204;48205;48206 48203 6 FQFDGDKK DERIQASKKLKGPQKFQFDGDKKSFLEDIR KLKGPQKFQFDGDKKSFLEDIRKALYASKI K F Q K K S 0 0 0 2 0 1 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 8 1 983.47125 P52209;K7ELN9 P52209 310 317 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.017993 54.549 By MS/MS By MS/MS 1 1 1.2506 1.1847 7.9474 2 Median 1.1717 1.1199 NaN 1 0 Median 1.3349 1.2532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15040000 6773400 8266400 10332000 4846400 5485700 4707700 1926900 2780800 0 0 0 0 0 0 0 0 0 0 0 0 9706 2447 10100 48270;48271 48207;48208;48209;48210 48207 4 FQFLPHAYYQQEK CMEEKQNKFQVYQLRFQFLPHAYYQQEKCL LRFQFLPHAYYQQEKCLRPEDILRFMETRF R F Q E K C 1 0 0 0 0 3 1 0 1 0 1 1 0 2 1 0 0 0 2 0 0 0 13 0 1697.8202 O95602;B9ZVN9 O95602 1319 1331 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2;3 0.0004217 51.875 By matching By MS/MS By matching 1 4 1 1.0009 0.97936 48.264 6 Median NaN NaN NaN 0 0 Median 1.0634 0.92322 NaN 1 0 Median 0.87046 0.96497 60.772 4 2 Median 1.1624 1.0536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25016000 13651000 11365000 0 0 0 789270 382630 406640 23624000 12962000 10662000 602080 306210 295870 0 0 0 0 0 0 9707 1781 10101 48272;48273;48274;48275;48276;48277 48211;48212;48213;48214 48212 4 FQGASNLTLSETQNGDVSEETMGSR KIEKRNLKLRQRNLKFQGASNLTLSETQNG ETQNGDVSEETMGSRKVKKSKQKPMNVGLS K F Q S R K 1 1 2 1 0 2 3 3 0 0 2 0 1 1 0 4 3 0 0 1 0 0 25 0 2657.1875 Q9NVP1 Q9NVP1 27 51 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 9.2425E-09 47.807 By MS/MS 1 1.1168 1.1812 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1168 1.1812 NaN 1 0 Median NaN NaN NaN 0 0 Median 3120600 1354600 1766000 0 0 0 0 0 0 0 0 0 0 0 0 3120600 1354600 1766000 0 0 0 9708 4137 10102 48278 48215 48215 1 FQGEDTVVIASK LNESEVNRGDKYIAKFQGEDTVVIASKPYA IAKFQGEDTVVIASKPYAFDRVFQSSTSQE K F Q S K P 1 0 0 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 0 2 0 0 12 0 1292.6612 P33176 P33176 33 44 KIF5B Kinesin-1 heavy chain yes yes 2 0.032004 27.481 By MS/MS 1 1.1913 1.01 NaN 1 Median NaN NaN NaN 0 0 Median 1.1913 1.01 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8098400 3560800 4537600 0 0 0 8098400 3560800 4537600 0 0 0 0 0 0 0 0 0 0 0 0 9709 2221 10103 48279 48216 48216 1 FQGEDTVVIASKPYAFDR LNESEVNRGDKYIAKFQGEDTVVIASKPYA EDTVVIASKPYAFDRVFQSSTSQEQVYNDC K F Q D R V 2 1 0 2 0 1 1 1 0 1 0 1 0 2 1 1 1 0 1 2 0 0 18 1 2042.0109 P33176 P33176 33 50 KIF5B Kinesin-1 heavy chain yes yes 2;3 1.8206E-10 104.17 By MS/MS By matching 2 2 0.93367 1.0165 31.703 4 Median 0.79702 0.83104 11.963 2 0 Median NaN NaN NaN 0 0 Median 1.1865 1.3468 23.26 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47581000 24002000 23580000 40174000 21352000 18821000 0 0 0 7407800 2649100 4758700 0 0 0 0 0 0 0 0 0 9710 2221 10104 48280;48281;48282;48283 48217;48218;48219;48220 48219 4 FQGEYGSDPEERPPNLK EGDSKKKIIVSNKKRFQGEYGSDPEERPPN GEYGSDPEERPPNLKRPEDYEAVFVGNIDD R F Q L K R 0 1 1 1 0 1 3 2 0 0 1 1 0 1 3 1 0 0 1 0 0 0 17 1 1961.9119 Q68CQ4;H7C2R4 Q68CQ4 392 408 DIEXF Digestive organ expansion factor homolog yes no 3 7.0589E-06 67.646 By matching By MS/MS By MS/MS 1 1 1 0.49299 0.47374 35.477 3 Median NaN NaN NaN 0 0 Median 0.9333 0.86403 NaN 1 0 Median 0.41839 0.47374 NaN 1 0 Median 0.49299 0.46149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38450000 23326000 15125000 0 0 0 12373000 6881500 5491200 20094000 13271000 6823400 5983800 3173900 2809900 0 0 0 0 0 0 9711 3123 10105 48284;48285;48286 48221;48222;48223 48222 3 FQGGKKEELIGIAYNR WQSLPEFGITHFIARFQGGKKEELIGIAYN QGGKKEELIGIAYNRLIRMDASTGDAIKTW R F Q N R L 1 1 1 0 0 1 2 3 0 2 1 2 0 1 0 0 0 0 1 0 0 0 16 2 1821.9737 H0YJ34;Q96AC1;A0A0U1RRM8;H0YJB6 H0YJ34 537 552 FERMT2 Fermitin family homolog 2 yes no 3 0.047788 25.319 By MS/MS 1 0.73558 0.8005 NaN 1 Median 0.73558 0.8005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3272500 1713900 1558600 3272500 1713900 1558600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9712 1184 10106 48287 48224 48224 0 FQGMSDFQYLAVHTEAGGK TFDMEILGIISTIYKFQGMSDFQYLAVHTE SDFQYLAVHTEAGGKHTSMYDKVLMLRPEK K F Q G K H 2 0 0 1 0 2 1 3 1 0 1 1 1 2 0 1 1 0 1 1 0 0 19 0 2084.9626 Q9Y5Q8;Q5T7U1;Q5T7U4 Q9Y5Q8 123 141 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 5.1735E-07 57.338 By MS/MS 1 0.97215 0.94653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97215 0.94653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10546000 5696500 4849300 0 0 0 0 0 0 10546000 5696500 4849300 0 0 0 0 0 0 0 0 0 9713 4466 10107 48288 48225 48225 1 FQGQDTILDYTLR FPLLLQKKKFHGYFKFQGQDTILDYTLREV FKFQGQDTILDYTLREVDTV__________ K F Q L R E 0 1 0 2 0 2 0 1 0 1 2 0 0 1 0 0 2 0 1 0 0 0 13 0 1568.7835 P36639 P36639 180 192 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes yes 2 0.00054372 70.977 By MS/MS By MS/MS 1 1 1.1891 1.09 7.5921 2 Median NaN NaN NaN 0 0 Median 1.3862 1.1501 NaN 1 0 Median 1.02 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6683600 3177100 3506500 0 0 0 3349600 1379000 1970600 3334000 1798100 1536000 0 0 0 0 0 0 0 0 0 9714 2261 10108 48289;48290 48226;48227;48228;48229 48227 4 FQGQPDIYK EFNHAINYVNKIKNRFQGQPDIYKAFLEIL NKIKNRFQGQPDIYKAFLEILHTYQKEQRN R F Q Y K A 0 0 0 1 0 2 0 1 0 1 0 1 0 1 1 0 0 0 1 0 0 0 9 0 1094.5397 Q96ST3 Q96ST3 318 326 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.043285 32.812 By MS/MS 1 0.91374 0.97655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91374 0.97655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10135000 4903300 5231200 0 0 0 0 0 0 10135000 4903300 5231200 0 0 0 0 0 0 0 0 0 9715 3737 10109 48291 48230 48230 1 FQGQQNDYILLSLVR NPLIGRPNKVTTVDRFQGQQNDYILLSLVR FQGQQNDYILLSLVRTRAVGHLRDVRRLVV R F Q V R T 0 1 1 1 0 3 0 1 0 1 3 0 0 1 0 1 0 0 1 1 0 0 15 0 1792.9472 O60306 O60306 1263 1277 AQR Intron-binding protein aquarius yes yes 2 0.048135 23.376 By matching By MS/MS By matching 1 1 1 1.1674 1.0637 5.3088 3 Median NaN NaN NaN 0 0 Median 1.1674 0.97503 NaN 1 0 Median 0.98492 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.258 1.0637 NaN 1 0 Median 3467200 1617400 1849800 0 0 0 1591700 704050 887610 1803500 885990 917490 0 0 0 0 0 0 72021 27333 44688 9716 1611 10110 48292;48293;48294 48231 48231 1 FQGSGAATETAESR TPQTVPTGGKALSEKFQGSGAATETAESRR KFQGSGAATETAESRRRSSSDTAAYPAGTT K F Q S R R 3 1 0 0 0 1 2 2 0 0 0 0 0 1 0 2 2 0 0 0 0 0 14 0 1410.6375 O15047 O15047 204 217 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 2 0.00073675 62.408 By MS/MS 1 0.6763 0.75051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6763 0.75051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1907000 1165700 741280 0 0 0 0 0 0 1907000 1165700 741280 0 0 0 0 0 0 0 0 0 9717 1516 10111 48295 48232;48233 48232 2 FQHLSHYDQHQVTAQVSR NRPEAFPTAEDIFAKFQHLSHYDQHQVTAQ LSHYDQHQVTAQVSRNVLEQITSFALGMSY K F Q S R N 1 1 0 1 0 4 0 0 3 0 1 0 0 1 0 2 1 0 1 2 0 0 18 0 2180.0511 Q93074;Q7Z3Z5 Q93074 833 850 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 yes no 3;4 1.4312E-06 69.935 By MS/MS 2 0.85449 0.93993 38.387 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85449 0.93993 38.387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16524000 9527000 6996900 0 0 0 0 0 0 16524000 9527000 6996900 0 0 0 0 0 0 0 0 0 9718 3578 10112 48296;48297 48234;48235;48236 48235 3 FQHPSHELLK PTVGSYGCTPQSLPKFQHPSHELLKENGFT QSLPKFQHPSHELLKENGFTQHVYHKYRRR K F Q L K E 0 0 0 0 0 1 1 0 2 0 2 1 0 1 1 1 0 0 0 0 0 0 10 0 1234.6459 Q6PKG0;A0A3B3ISF0;Q659C4 Q6PKG0 872 881 LARP1;LARP1B La-related protein 1;La-related protein 1B yes no 2;3 0.00011341 75.416 By MS/MS By matching By matching 3 1 1 1.0796 1.0035 18.882 5 Median NaN NaN NaN 0 0 Median 1.0796 0.91475 25.16 3 0 Median 0.94129 1.0035 NaN 1 0 Median 1.2669 1.0635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18045000 9318400 8726800 0 0 0 16027000 8281400 7746000 716700 198740 517960 1301200 838290 462880 0 0 0 0 0 0 9719 3176 10113 48298;48299;48300;48301;48302 48237;48238;48239;48240 48237 4 FQIAQVVR WTKAHNLLCQQKIQKFQIAQVVRESNAMLR CQQKIQKFQIAQVVRESNAMLREGYKTFFN K F Q V R E 1 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 959.55525 Q969T7;U3KQB1;E5RH64 Q969T7 121 128 NT5C3B 7-methylguanosine phosphate-specific 5-nucleotidase yes no 2 0.0044267 81.635 By MS/MS 1 0.97942 0.91611 NaN 1 Median 0.97942 0.91611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10939000 5317400 5621800 10939000 5317400 5621800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9720 3588 10114 48303 48241;48242 48242 2 FQIATVTEK CMRVLYYRDARSYNRFQIATVTEKGVEIEG ARSYNRFQIATVTEKGVEIEGPLSTETNWD R F Q E K G 1 0 0 0 0 1 1 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 9 0 1035.5601 P28070 P28070 232 240 PSMB4 Proteasome subunit beta type-4 yes yes 2 0.00048867 121.09 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1031 0.96748 5.5641 4 Median 1.0355 0.9549 NaN 1 0 Median 1.1751 0.98024 NaN 1 0 Median 0.95882 0.89869 NaN 1 0 Median 1.2403 1.0269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110980000 52316000 58669000 80243000 38623000 41620000 17938000 7592400 10345000 10620000 5193500 5426700 2183800 907460 1276400 0 0 0 0 0 0 9721 2160 10115 48304;48305;48306;48307 48243;48244;48245;48246;48247;48248;48249 48248 7 FQIEANFPR VIHDFLFSLKESPEKFQIEANFPRRVLPCI KESPEKFQIEANFPRRVLPCIPSEEWPNPP K F Q P R R 1 1 1 0 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 9 0 1120.5665 Q96CS3 Q96CS3 401 409 FAF2 FAS-associated factor 2 yes yes 2 0.028146 50.703 By MS/MS By matching By MS/MS 1 2 1 1.3171 1.1233 29.697 4 Median 0.95689 0.9233 NaN 1 1 Median 1.3171 1.1233 3.4199 2 0 Median 1.8406 1.8478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14554000 6565800 7987900 8197600 3906500 4291200 2638900 1154000 1484900 3717300 1505400 2211900 0 0 0 0 0 0 0 0 0 9722 3620 10116 48308;48309;48310;48311 48250;48251 48250 2 FQIGDYLDIAITPPNR GRKGTDDSMTLQSQKFQIGDYLDIAITPPN QIGDYLDIAITPPNRAPPPSGRMRPY____ K F Q N R A 1 1 1 2 0 1 0 1 0 3 1 0 0 1 2 0 1 0 1 0 0 0 16 0 1831.9468 O00422;H7BZW6 O00422 127 142 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 0.03483 23.987 By MS/MS By matching 1 1 0.90492 0.82558 5.5781 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75075 0.79365 NaN 1 0 Median 1.0908 0.85879 NaN 1 0 Median 1453400 767000 686410 0 0 0 0 0 0 0 0 0 0 0 0 1251600 655100 596460 201840 111900 89942 9723 1253 10117 48312;48313 48252 48252 1 FQIGELANTLTSK KVQTTPKVEEEQDLKFQIGELANTLTSKFE LKFQIGELANTLTSKFEFLGINRQSISNFH K F Q S K F 1 0 1 0 0 1 1 1 0 1 2 1 0 1 0 1 2 0 0 0 0 0 13 0 1420.7562 Q8N3X1 Q8N3X1 528 540 FNBP4 Formin-binding protein 4 yes yes 2 0.00070641 67.153 By MS/MS By MS/MS By matching 1 2 1 1.1061 1.0079 10.414 4 Median NaN NaN NaN 0 0 Median 1.1389 0.97406 NaN 1 0 Median 0.98615 1.0314 17.224 2 0 Median 1.1609 1.043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8117800 3888600 4229200 0 0 0 1196700 503440 693260 6631200 3253400 3377800 289920 131780 158140 0 0 0 0 0 0 9724 3370 10118 48314;48315;48316;48317 48253;48254;48255 48254 3 FQIMNEIVYEK EQTYVGITEKKAIKRFQIMNEIVYEKIMEH AIKRFQIMNEIVYEKIMEHAGKNQVLVFVH R F Q E K I 0 0 1 0 0 1 2 0 0 2 0 1 1 1 0 0 0 0 1 1 0 0 11 0 1412.701 O75643;A0A494C1A5 O75643 701 711 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0015582 61.78 By matching By MS/MS By matching 1 3 1 0.95747 0.97117 56.883 5 Median NaN NaN NaN 0 0 Median 0.32752 0.27982 NaN 1 0 Median 0.95747 1.0544 24.4 3 1 Median 1.0671 0.97117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49929000 27822000 22107000 0 0 0 5903500 4511900 1391600 42780000 22717000 20063000 1245200 592520 652710 0 0 0 0 0 0 9725 1688 10119;10120 48318;48319;48320;48321;48322 48256;48257;48258;48259;48260 48256 549 5 FQIPPNAELK YLKPSYAFGSVGKEKFQIPPNAELKYELHL VGKEKFQIPPNAELKYELHLKSFEKAKESW K F Q L K Y 1 0 1 0 0 1 1 0 0 1 1 1 0 1 2 0 0 0 0 0 0 0 10 0 1155.6288 Q02790 Q02790 235 244 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.013194 58.433 By MS/MS By MS/MS By MS/MS 2 1 1 0.76213 0.70579 10.441 3 Median 0.76213 0.70579 NaN 1 1 Median 0.74206 0.63084 NaN 1 0 Median 0.78534 0.77718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26102000 14249000 11853000 12906000 6888900 6016900 6084800 3305500 2779300 7111400 4054200 3057200 0 0 0 0 0 0 0 0 0 9726 2701 10121 48323;48324;48325;48326 48261;48262;48263;48264;48265 48264 5 FQIQDISVETEDNK NHRLTLGLIWTIILRFQIQDISVETEDNKE RFQIQDISVETEDNKEKKSAKDALLLWCQM R F Q N K E 0 0 1 2 0 2 2 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 14 0 1664.7893 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 157 170 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 6.9668E-08 112.13 By MS/MS By matching By matching 1 1 1 0.79753 0.88014 29.299 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79753 0.88014 NaN 1 0 Median 0.52341 0.53601 NaN 1 0 Median 0.8526 0.90004 NaN 1 0 Median NaN NaN NaN 0 0 Median 13406000 6964400 6442100 0 0 0 0 0 0 11629000 6047500 5581600 171070 91050 80018 1606300 825850 780490 0 0 0 9727 2681;1512 10122 48327;48328;48329 48266;48267 48267 2 FQIQDISVETEDNKEK NHRLTLGLIWTIILRFQIQDISVETEDNKE QIQDISVETEDNKEKKSAKDALLLWCQMKT R F Q E K K 0 0 1 2 0 2 3 0 0 2 0 2 0 1 0 1 1 0 0 1 0 0 16 1 1921.9269 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 157 172 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2;3 4.2089E-09 116.01 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.0877 1.1569 8.1755 5 Median 1.2085 1.1569 NaN 1 0 Median 1.2369 1.183 NaN 1 1 Median 0.87218 1.0114 3.3903 2 0 Median NaN NaN NaN 0 0 Median 1.0877 1.1691 NaN 1 0 Median NaN NaN NaN 0 0 Median 106950000 56425000 50530000 15610000 6765100 8845100 21362000 8159100 13203000 63245000 38534000 24711000 0 0 0 6737200 2966600 3770600 0 0 0 9728 2681;1512 10123 48330;48331;48332;48333;48334 48268;48269;48270;48271;48272 48271 5 FQIQDISVETEDNKEKK NHRLTLGLIWTIILRFQIQDISVETEDNKE IQDISVETEDNKEKKSAKDALLLWCQMKTA R F Q K K S 0 0 1 2 0 2 3 0 0 2 0 3 0 1 0 1 1 0 0 1 0 0 17 2 2050.0219 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 157 173 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 3;4 1.3413E-06 84.653 By MS/MS By MS/MS 1 2 0.47568 0.55112 67.489 3 Median 0.39603 0.4336 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79629 0.92257 72.863 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56820000 29969000 26851000 7893800 4329700 3564100 0 0 0 48927000 25640000 23287000 0 0 0 0 0 0 0 0 0 9729 2681;1512 10124 48335;48336;48337 48273;48274;48275;48276 48275 4 FQIQQTENIIR ESQIRQLGKALDDSRFQIQQTENIIRSKTP DDSRFQIQQTENIIRSKTPTGPELDTSYKG R F Q I R S 0 1 1 0 0 3 1 0 0 3 0 0 0 1 0 0 1 0 0 0 0 0 11 0 1388.7412 A0A0C4DG40;Q8NF91;E7ENN3;Q5JV20;F8WAI0;H0Y326;H0Y325 A0A0C4DG40 8299 8309 SYNE1 Nesprin-1 yes no 2 0.035045 66.435 By MS/MS By matching 1 2 1.5135 1.3284 14.802 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0343 1.1376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5896 1.4253 9.9606 2 0 Median 4996200 2298900 2697300 0 0 0 0 0 0 2876300 1395600 1480800 0 0 0 0 0 0 2119900 903370 1216500 9730 233 10125 48338;48339;48340 48277 48277 0 FQLFQKPANFEQR QMDVLQRKLREVSTKFQLFQKPANFEQRML TKFQLFQKPANFEQRMLDCKRVLDGVKAEL K F Q Q R M 1 1 1 0 0 3 1 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 13 1 1651.8471 P46939 P46939 1431 1443 UTRN Utrophin yes yes 3 0.00027993 63.181 By MS/MS By matching 2 2 0.97193 0.97573 23.36 4 Median 0.77729 0.79692 20.943 2 0 Median 1.1475 1.1088 10.388 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18773000 9323500 9449400 16465000 8091300 8373200 2308400 1232200 1076200 0 0 0 0 0 0 0 0 0 0 0 0 9731 2349 10126 48341;48342;48343;48344 48278 48278 1 FQLKGEYDASK EDEIRGYKLHVEVAKFQLKGEYDASKKKKK EVAKFQLKGEYDASKKKKKCKDYKKKLSMQ K F Q S K K 1 0 0 1 0 1 1 1 0 0 1 2 0 1 0 1 0 0 1 0 0 0 11 1 1284.635 O43719;Q5H918 O43719 218 228 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.037638 41.399 By MS/MS 1 1.0222 1.0784 NaN 1 Median 1.0222 1.0784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3191900 1673500 1518300 3191900 1673500 1518300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9732 1586 10127 48345 48279 48279 1 FQLLEGPPESMGR GESSSITPLEELYKRFQLLEGPPESMGRGR KRFQLLEGPPESMGRGRDWNVDLIPKFLMA R F Q G R G 0 1 0 0 0 1 2 2 0 0 2 0 1 1 2 1 0 0 0 0 0 0 13 0 1459.7129 P31150;G5E9U5 P31150 56 68 GDI1 Rab GDP dissociation inhibitor alpha yes no 2 9.8952E-05 98.943 By MS/MS 1 1.9143 1.8115 NaN 1 Median 1.9143 1.8115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20171000 5332600 14839000 20171000 5332600 14839000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9733 2201 10128 48346 48280 48280 1 FQLQLLR EDDVFLTELMKLANRFQLQLLRERCEKGVM ELMKLANRFQLQLLRERCEKGVMSLVNVRN R F Q L R E 0 1 0 0 0 2 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 7 0 916.54944 Q9P2R3 Q9P2R3 145 151 ANKFY1 Rabankyrin-5 yes yes 2 0.041123 44.531 By MS/MS 1 1.0886 1.0695 NaN 1 Median 1.0886 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2414400 1104100 1310400 2414400 1104100 1310400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9734 4229 10129 48347 48281;48282 48282 2 FQLQSDLLR AVFGELPSGGGTVEKFQLQSDLLRVDIISW GGTVEKFQLQSDLLRVDIISWGCTITALEV K F Q L R V 0 1 0 1 0 2 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1118.6084 Q96C23;B8ZZ75 Q96C23 22 30 GALM Aldose 1-epimerase yes no 2 0.015183 43.808 By MS/MS By matching By MS/MS 1 1 1 1.1741 1.1086 10.516 3 Median 1.1113 1.1086 NaN 1 0 Median 1.1947 1.0362 NaN 1 0 Median 1.1741 1.2736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16589000 7796000 8792600 13784000 6394300 7389600 840790 409520 431280 1964000 992190 971770 0 0 0 0 0 0 0 0 0 9735 3614 10130 48348;48349;48350 48283;48284 48284 2 FQLTSDEMSLLR KLEIRAQVADAFLSKFQLTSDEMSLLRGTR LSKFQLTSDEMSLLRGTREGPITEFRNYGT K F Q L R G 0 1 0 1 0 1 1 0 0 0 3 0 1 1 0 2 1 0 0 0 0 0 12 0 1438.7126 H0YGX8;Q9Y2V7 H0YGX8 99 110 COG6 Conserved oligomeric Golgi complex subunit 6 yes no 2 0.001379 53.683 By MS/MS By MS/MS 1 1 0.84398 0.78471 5.6532 2 Median 0.75489 0.75396 NaN 1 0 Median 0.94359 0.81671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3783200 1985000 1798200 2689900 1412500 1277400 1093300 572490 520800 0 0 0 0 0 0 0 0 0 0 0 0 9736 1182 10131 48351;48352 48285;48286 48285 2 FQLVDSR LKTYEQVLENLESKRFQLVDSRSQGRFLGT LENLESKRFQLVDSRSQGRFLGTEPEPDAV R F Q S R S 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 7 0 863.45012 Q16762 Q16762 177 183 TST Thiosulfate sulfurtransferase yes yes 2 0.012003 79.116 By MS/MS By MS/MS 1 1 0.8893 0.79126 21.707 2 Median 0.71875 0.67867 NaN 1 0 Median 1.1003 0.92253 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8053100 4490100 3563000 5303700 3125600 2178100 2749400 1364500 1384800 0 0 0 0 0 0 0 0 0 0 0 0 9737 2996 10132 48353;48354 48287;48288 48287 2 FQMAYSNLLR KKKISTVVSSKEVNKFQMAYSNLLRANMDG KEVNKFQMAYSNLLRANMDGLKKRDKKNKT K F Q L R A 1 1 1 0 0 1 0 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 10 0 1241.6227 P37108 P37108 79 88 SRP14 Signal recognition particle 14 kDa protein yes yes 2 0.0004183 120.87 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 3 1 1 1.1621 1.0376 18.105 12 Median 1.1603 1.1222 14.724 2 1 Median 1.1256 0.96394 0.10406 2 0 Median 1.0815 1.0959 2.5273 3 0 Median 1.2561 1.0358 11.753 3 0 Plateau 1.6227 1.7166 NaN 1 0 Median 1.1615 0.90972 NaN 1 0 Median 120090000 55186000 64900000 44862000 20605000 24257000 14552000 6742300 7809700 50872000 23923000 26949000 3454600 1353600 2101000 2452200 801090 1651100 3894000 1761400 2132600 9738 2266 10133;10134 48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366 48289;48290;48291;48292;48293;48294;48295;48296;48297;48298;48299;48300 48292 1012 12 FQMELKDVER ESAKVCLTDVTIMERFQMELKDVERKIAQQ TIMERFQMELKDVERKIAQQAAKLQGIDLD R F Q E R K 0 1 0 1 0 1 2 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 10 1 1293.6387 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 798 807 RAD50 DNA repair protein RAD50 yes no 2;3 0.00010897 131.44 By matching By MS/MS By matching By matching 1 2 2 1 1.1523 1.2446 11.7 6 Median 1.0878 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0384 1.1773 12.009 2 0 Median NaN NaN NaN 0 0 Median 1.2357 1.3973 7.1546 2 0 Median 1.3604 1.2087 NaN 1 0 Median 42780000 19715000 23065000 4074800 1830200 2244600 0 0 0 30701000 14600000 16101000 0 0 0 7856000 3212100 4643900 148520 72736 75781 9739 3561 10135 48367;48368;48369;48370;48371;48372 48301;48302;48303;48304 48301 4 FQMPDQGMTSADDFFQGTK HSRMVIPGGIDVHTRFQMPDQGMTSADDFF DQGMTSADDFFQGTKAALAGGTTMIIDHVV R F Q T K A 1 0 0 3 0 3 0 2 0 0 0 1 2 3 1 1 2 0 0 0 0 0 19 0 2149.9085 Q16555;A0A1C7CYX9;E5RFU4 Q16555 76 94 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 6.1718E-05 46.88 By MS/MS By MS/MS By matching 1 1 1 0.69088 0.66273 34.233 3 Median 0.69088 0.66273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59938 0.61249 NaN 1 1 Median 1.3099 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6091000 3605300 2485800 4469400 2594800 1874600 0 0 0 1509400 946090 563310 112220 64393 47826 0 0 0 0 0 0 9740 328 10136 48373;48374;48375 48305;48306 48305 2 FQNALLVR IKQNCELFEQLGEYKFQNALLVRYTKKVPQ EQLGEYKFQNALLVRYTKKVPQVSTPTLVE K F Q V R Y 1 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 959.55525 A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;A0A087WWT3;C9JKR2;D6RHD5;B7WNR0 A0A0C4DGB6 427 434 ALB Serum albumin yes no 2 0.035374 57.559 By MS/MS 1 0.077418 0.060998 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.077418 0.060998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759300 1615600 143740 0 0 0 0 0 0 0 0 0 1759300 1615600 143740 0 0 0 0 0 0 + 9741 240 10137 48376 48307 48307 1 FQNVADLHLYLYSAK EIEHFVDPSEKDHPKFQNVADLHLYLYSAK FQNVADLHLYLYSAKAQVSGQSARKMRLGD K F Q A K A 2 0 1 1 0 1 0 0 1 0 3 1 0 1 0 1 0 0 2 1 0 0 15 0 1780.9148 P41250 P41250 365 379 GARS Glycine--tRNA ligase yes yes 2 0.00024495 71.555 By MS/MS 1 1.0802 1.0421 NaN 1 Median 1.0802 1.0421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3335900 1615800 1720200 3335900 1615800 1720200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9742 2301 10138 48377 48308 48308 1 FQPGETLTEILETPATSEQEAEHQR TILLNTKRLIVDVIRFQPGETLTEILETPA LETPATSEQEAEHQRAMQRRAIRDAKTPDK R F Q Q R A 2 1 0 0 0 3 6 1 1 1 2 0 0 1 2 1 4 0 0 0 0 0 25 0 2840.3464 P46940;H0YLE8 P46940 1398 1422 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 1.1098E-21 95.926 By MS/MS By MS/MS By MS/MS 2 2 2 0.73141 0.66754 17.358 6 Median 0.70386 0.67394 10.876 2 0 Median 0.74013 0.64282 7.534 2 0 Median 0.73448 0.80176 28.108 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47009000 25227000 21782000 37508000 19987000 17521000 5439200 3094700 2344500 4061400 2144900 1916500 0 0 0 0 0 0 0 0 0 9743 2350 10139 48378;48379;48380;48381;48382;48383 48309;48310;48311;48312;48313;48314;48315;48316 48311 8 FQPLFGDFAAEK LPKEKVPRGSGKKRKFQPLFGDFAAEKKNQ KRKFQPLFGDFAAEKKNQLELLRVMNSKKP K F Q E K K 2 0 0 1 0 1 1 1 0 0 1 1 0 3 1 0 0 0 0 0 0 0 12 0 1368.6714 Q15050 Q15050 254 265 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0010376 57.836 By MS/MS 2 0.93491 0.92518 13.501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93491 0.92518 13.501 2 0 Median NaN NaN NaN 0 0 Median 8923800 4926800 3997000 0 0 0 0 0 0 0 0 0 0 0 0 8923800 4926800 3997000 0 0 0 9744 2920 10140 48384;48385 48317 48317 1 FQPLFGDFAAEKK LPKEKVPRGSGKKRKFQPLFGDFAAEKKNQ RKFQPLFGDFAAEKKNQLELLRVMNSKKPQ K F Q K K N 2 0 0 1 0 1 1 1 0 0 1 2 0 3 1 0 0 0 0 0 0 0 13 1 1496.7664 Q15050 Q15050 254 266 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 0.046333 13.745 By MS/MS By matching 2 1 0.86578 0.92366 12.191 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84206 0.89246 4.8603 2 0 Median 1.2262 1.0929 NaN 1 0 Median 7189700 4095300 3094400 0 0 0 0 0 0 0 0 0 0 0 0 7028700 4007700 3021000 161040 87590 73454 9745 2920 10141 48386;48387;48388 48318 48318 1 FQPLLDGLK LEAMTERAEMDEVERFQPLLDGLKSGTTIA MDEVERFQPLLDGLKSGTTIALKVGCLQLI R F Q L K S 0 0 0 1 0 1 0 1 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 0 1029.5859 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 295 303 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.019254 40.021 By MS/MS By matching By matching 2 2 1 1.177 1.0601 15.341 5 Median 1.1222 1.1072 21.847 2 0 Median 1.2229 1.0604 21.014 2 0 Median NaN NaN NaN 0 0 Median 1.177 1.0601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18173000 8673600 9499600 9782600 4803200 4979400 8018500 3714400 4304100 0 0 0 372090 155970 216120 0 0 0 0 0 0 9746 274 10142 48389;48390;48391;48392;48393 48319 48319 1 FQPPPEYQLTAAELK SRIKKQVSPTEMVAKFQPPPEYQLTAAELK FQPPPEYQLTAAELKQIVDQSLSGGDLACR K F Q L K Q 2 0 0 0 0 2 2 0 0 0 2 1 0 1 3 0 1 0 1 0 0 0 15 0 1730.8879 Q5T5X7 Q5T5X7 240 254 BEND3 BEN domain-containing protein 3 yes yes 2 0.00034016 54.776 By MS/MS 1 0.66217 0.71911 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66217 0.71911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2683100 1721200 961920 0 0 0 0 0 0 2683100 1721200 961920 0 0 0 0 0 0 0 0 0 9747 3090 10143 48394 48320 48320 1 FQPQSPDFLDITNPK VQVESVNLQVATYSKFQPQSPDFLDITNPK FQPQSPDFLDITNPKAVLENALRNFACLTT K F Q P K A 0 0 1 2 0 2 0 0 0 1 1 1 0 2 3 1 1 0 0 0 0 0 15 0 1745.8625 Q92890;C9JNP9;C9J6N9;C9IZG3 Q92890 125 139 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 2 0.00066957 47.288 By MS/MS By matching 1 1 0.71823 0.64914 1.174 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67009 0.64377 NaN 1 0 Median 0.76983 0.65455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13921000 8039200 5882100 0 0 0 0 0 0 6885900 3975000 2910900 7035400 4064200 2971200 0 0 0 0 0 0 9748 3562 10144 48395;48396 48321 48321 1 FQQAQEELAEMK LLKSKEQEVNELLQKFQQAQEELAEMKRYA LQKFQQAQEELAEMKRYAESSSKLEEDKDK K F Q M K R 2 0 0 0 0 3 3 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 12 0 1450.6762 Q9P0K7 Q9P0K7 856 867 RAI14 Ankycorbin yes yes 2 3.2326E-06 115.78 By MS/MS 1 1.3192 1.1381 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3192 1.1381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4508900 1934000 2574900 0 0 0 0 0 0 0 0 0 4508900 1934000 2574900 0 0 0 0 0 0 9749 4204 10145 48397 48322;48323 48323 2 FQQAQEELAEMKR LLKSKEQEVNELLQKFQQAQEELAEMKRYA QKFQQAQEELAEMKRYAESSSKLEEDKDKK K F Q K R Y 2 1 0 0 0 3 3 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 13 1 1606.7773 Q9P0K7 Q9P0K7 856 868 RAI14 Ankycorbin yes yes 3 0.00015822 68.171 By MS/MS By MS/MS By matching 2 1 1 0.88231 0.98545 35.693 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8158 0.92581 10.749 2 0 Median 1.9747 1.8978 NaN 1 0 Median 0.88397 0.97216 NaN 1 0 Median NaN NaN NaN 0 0 Median 43842000 23096000 20746000 0 0 0 0 0 0 31268000 16578000 14690000 5546900 2157600 3389300 7026300 4360000 2666200 0 0 0 9750 4204 10146 48398;48399;48400;48401 48324;48325;48326 48326 1 FQQAVDAVEEFLR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD R F Q L R R 2 1 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 13 0 1550.7729 Q49A26;K7EMM8;K7EQB2 Q49A26 79 91 GLYR1 Putative oxidoreductase GLYR1 yes no 2 5.9879E-07 118.4 By MS/MS By MS/MS By matching 1 1 2 0.95016 0.90584 11.759 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88403 0.90862 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71249 0.7182 NaN 1 0 Median 1.0721 0.90835 0.82511 2 0 Median 9578700 4998500 4580200 0 0 0 0 0 0 5428300 2908200 2520100 0 0 0 2574800 1329800 1244900 1575600 760470 815160 9751 3018 10147 48402;48403;48404;48405 48327;48328;48329 48327 3 FQQEKEELINK DAKEQVSPLETTLEKFQQEKEELINKKNTS TLEKFQQEKEELINKKNTSNKIAQDKLNDI K F Q N K K 0 0 1 0 0 2 3 0 0 1 1 2 0 1 0 0 0 0 0 0 0 0 11 1 1404.7249 Q92878;A0A1W2PQ90 Q92878 922 932 RAD50 DNA repair protein RAD50 yes no 3 0.01491 26.707 By matching By matching By MS/MS 1 1 1 1.1846 1.3482 17.476 3 Plateau NaN NaN NaN 0 0 Median 1.0762 1.0069 NaN 1 0 Median 1.1869 1.3584 NaN 1 0 Median 1.068 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7122600 3231300 3891300 0 0 0 1998000 840620 1157400 3393700 1587000 1806700 1730800 803590 927200 0 0 0 0 0 0 9752 3561 10148 48406;48407;48408 48330 48330 1 FQQEKEELINKK DAKEQVSPLETTLEKFQQEKEELINKKNTS LEKFQQEKEELINKKNTSNKIAQDKLNDIK K F Q K K N 0 0 1 0 0 2 3 0 0 1 1 3 0 1 0 0 0 0 0 0 0 0 12 2 1532.8199 Q92878;A0A1W2PQ90 Q92878 922 933 RAD50 DNA repair protein RAD50 yes no 3 0.00041527 55.04 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1.0998 1.2081 8.3536 7 Median 1.0998 1.2041 NaN 1 0 Median 1.2632 1.1997 NaN 1 0 Median 1.0054 1.2081 NaN 1 0 Median 1.2184 1.2349 NaN 1 0 Median 1.0889 1.2747 NaN 1 0 Median 1.2205 1.292 18.741 2 0 Median 38491000 17723000 20769000 4131800 1984400 2147400 7882500 3022100 4860400 15705000 7835000 7870500 5461000 2379400 3081700 3495500 1715100 1780400 1815100 786830 1028300 9753 3561 10149 48409;48410;48411;48412;48413;48414;48415 48331;48332;48333;48334;48335;48336;48337 48335 7 FQQQLEQLNAMGFLNR LAGANAPQLPNPEVRFQQQLEQLNAMGFLN QQQLEQLNAMGFLNREANLQALIATGGDIN R F Q N R E 1 1 2 0 0 4 1 1 0 0 3 0 1 2 0 0 0 0 0 0 0 0 16 0 1935.9625 Q9UHD9 Q9UHD9 582 597 UBQLN2 Ubiquilin-2 yes yes 2 0.00063854 44.188 By matching By MS/MS 1 1 0.82761 0.7691 26.622 2 Median 0.63697 0.63713 NaN 1 0 Median 1.0753 0.9284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4218200 2176000 2042100 2606500 1452000 1154500 1611600 724010 887640 0 0 0 0 0 0 0 0 0 0 0 0 9754 4277 10150 48416;48417 48338 48338 1 FQQQLEQLSAMGFLNR ALAGVNPQLQNPEVRFQQQLEQLSAMGFLN QQQLEQLSAMGFLNREANLQALIATGGDIN R F Q N R E 1 1 1 0 0 4 1 1 0 0 3 0 1 2 0 1 0 0 0 0 0 0 16 0 1908.9516 Q9UMX0 Q9UMX0 547 562 UBQLN1 Ubiquilin-1 yes yes 2 0.058494 32.946 By MS/MS 1 1.0204 1.0334 NaN 1 Median 1.0204 1.0334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1752000 831790 920190 1752000 831790 920190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9755 4335 10151 48418 48339 48339 1 FQQQQGLR EVRFLRPEDPTRPSRFQQQQGLRHVVFTAE DPTRPSRFQQQQGLRHVVFTAETHNFPTGV R F Q L R H 0 1 0 0 0 4 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1003.5199 O15067 O15067 295 302 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 3.031E-06 122.79 By MS/MS 1 1.0689 0.896 NaN 1 Median NaN NaN NaN 0 0 Median 1.0689 0.896 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8354700 4100800 4253900 0 0 0 8354700 4100800 4253900 0 0 0 0 0 0 0 0 0 0 0 0 9756 1518 10152 48419 48340 48340 1 FQQTQYLALPER RTIYSSLQLQALNHRFQQTQYLALPERAEL NHRFQQTQYLALPERAELAASLGLTQTQVK R F Q E R A 1 1 0 0 0 3 1 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 12 0 1492.7674 G3V471;P56179;F8VXJ2;P56177;J3KP55 G3V471 58 69 DLX6;DLX1 Homeobox protein DLX-6;Homeobox protein DLX-1 yes no 2 6.1571E-05 94.297 By matching By MS/MS 1 1 1.1287 1.1747 7.3979 2 Median 1.1153 1.1148 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1423 1.2378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25745000 11202000 14543000 21285000 9016600 12269000 0 0 0 4459800 2185800 2274000 0 0 0 0 0 0 0 0 0 9757 1113 10153 48420;48421 48341 48341 1 FQQVPTDALANK PPVDPNQEVPPGPPRFQQVPTDALANKLFG PPRFQQVPTDALANKLFGAPEPSTIARSLP R F Q N K L 2 0 1 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 12 0 1330.6881 Q6PKG0;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 742 753 LARP1 La-related protein 1 yes no 2 3.7333E-06 107.08 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.91413 0.8602 21.708 4 Median 0.6842 0.6586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86497 0.73987 NaN 1 0 Median 0.96608 1.0146 NaN 1 0 Median 1.2104 1.0001 NaN 1 0 Median 33697000 17861000 15836000 25412000 14129000 11283000 0 0 0 0 0 0 2730400 1194700 1535700 3992400 1797100 2195300 1562300 740070 822260 9758 3176 10154 48422;48423;48424;48425 48342;48343;48344 48342 3 FQRPGDPQSAQDK CTKCGGAGHIASDCKFQRPGDPQSAQDKAR CKFQRPGDPQSAQDKARMDKEYLSLMAELG K F Q D K A 1 1 0 2 0 3 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1472.7008 Q15637;H7C561 Q15637 294 306 SF1 Splicing factor 1 yes no 2;3 5.1845E-05 82.774 By matching By MS/MS By MS/MS By MS/MS 2 1 3 3 0.86834 0.86382 9.2297 9 Median 0.85426 0.86835 0.73817 2 0 Median 0.86834 0.87072 NaN 1 0 Median 0.74879 0.79497 17.016 3 0 Median 0.91304 0.86195 6.9261 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27627000 14660000 12967000 974020 512460 461560 1202500 598010 604470 22602000 12203000 10400000 2848000 1347200 1500700 0 0 0 0 0 0 9759 2959 10155 48426;48427;48428;48429;48430;48431;48432;48433;48434 48345;48346;48347;48348;48349;48350;48351;48352;48353;48354;48355 48347 11 FQSDSSSYPTVDSNSLLGQSR ASPMLKSGMSPEQSRFQSDSSSYPTVDSNS SYPTVDSNSLLGQSRLETAESKEKMALPPQ R F Q S R L 0 1 1 2 0 2 0 1 0 0 2 0 0 1 1 7 1 0 1 1 0 0 21 0 2274.04 Q9UQ35 Q9UQ35 1138 1158 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 2.1072E-32 170.49 By MS/MS By matching By matching 4 1 2 0.89032 0.86712 14.889 7 Median 0.89081 0.86737 6.0919 4 0 Median 0.74527 0.62856 NaN 1 0 Median 0.81317 0.90091 16.25 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55082000 27888000 27194000 48672000 24334000 24338000 1585800 574880 1011000 4824300 2979000 1845300 0 0 0 0 0 0 0 0 0 9760 4359 10156 48435;48436;48437;48438;48439;48440;48441 48356;48357;48358;48359 48358 4 FQSEEQQQTEDELQDK SSEESITRINKKIEKFQSEEQQQTEDELQD QSEEQQQTEDELQDKIHPFAQTQSLVYPFP K F Q D K I 0 0 0 2 0 5 4 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 16 0 1980.8549 CON__P02666 CON__P02666 33 48 yes yes 2 0.028184 36.847 By MS/MS 1 0.075712 0.065809 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.075712 0.065809 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 618900 577730 41168 0 0 0 0 0 0 0 0 0 618900 577730 41168 0 0 0 0 0 0 + 9761 744 10157 48442 48360 48360 1 FQSGDFHVINGVLR FPQKWPDLLTEMVNRFQSGDFHVINGVLRT RFQSGDFHVINGVLRTAHSLFKRYRHEFKS R F Q L R T 0 1 1 1 0 1 0 2 1 1 1 0 0 2 0 1 0 0 0 2 0 0 14 0 1587.8158 P55060 P55060 138 151 CSE1L Exportin-2 yes yes 2;3 2.1428E-07 117.14 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 2 2 1 1.1505 1.1045 31.144 11 Median 1.1295 1.0863 12.382 4 0 Median 1.3808 1.1803 7.2429 2 0 Median 1.0215 1.0954 20.024 2 1 Median 1.0759 0.90036 12.12 2 0 Median 2.5639 2.7297 NaN 1 0 Median NaN NaN NaN 0 0 Median 89549000 39406000 50142000 71713000 31981000 39732000 10053000 3924000 6129000 4761000 2282900 2478100 1228800 579920 648890 1793200 638680 1154500 0 0 0 9762 2493 10158 48443;48444;48445;48446;48447;48448;48449;48450;48451;48452;48453 48361;48362;48363;48364;48365;48366;48367;48368 48364 8 FQSISTEFLALMK GSADIKHLLPVETQRFQSISTEFLALMKKV QRFQSISTEFLALMKKVSKSPLVMDVLNIQ R F Q M K K 1 0 0 0 0 1 1 0 0 1 2 1 1 2 0 2 1 0 0 0 0 0 13 0 1513.7851 Q14204 Q14204 1568 1580 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00024031 79.974 By MS/MS By MS/MS By matching By matching 3 3 2 1 1.1037 1.0816 19.516 9 Median 1.1037 1.0582 31.864 3 0 Median 1.2399 1.0816 14.227 3 0 Median 1.0755 1.1854 1.9398 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1422 1.0047 NaN 1 0 Median 20471000 9258200 11213000 13936000 6387100 7548600 5429400 2294900 3134600 1045600 545510 500120 0 0 0 0 0 0 60467 30735 29732 9763 2865 10159 48454;48455;48456;48457;48458;48459;48460;48461;48462 48369;48370;48371;48372 48372 4 FQSLGVAFYR RLVTMQIWDTAGQERFQSLGVAFYRGADCC AGQERFQSLGVAFYRGADCCVLVFDVTAPN R F Q Y R G 1 1 0 0 0 1 0 1 0 0 1 0 0 2 0 1 0 0 1 1 0 0 10 0 1186.6135 P51149;C9J592;C9J8S3;C9IZZ0 P51149 70 79 RAB7A Ras-related protein Rab-7a yes no 2 6.8568E-05 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 1 3 3 1.4208 1.2488 22.494 14 Median 1.3112 1.2629 5.7252 2 1 Median 1.4208 1.2054 9.0491 4 0 Median 1.5422 1.4819 NaN 1 0 Median 1.5841 1.3058 NaN 1 0 Median 1.5932 1.7033 29.04 3 0 Median 1.3219 1.0271 19.516 3 0 Median 164400000 72116000 92285000 140700000 62661000 78041000 8321500 3259100 5062400 8707400 3384000 5323300 704280 287320 416960 1675400 717340 958050 4289900 1806600 2483300 9764 2428 10160 48463;48464;48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476 48373;48374;48375;48376;48377;48378;48379 48374 7 FQSLNADINKR SKTFHFNTVEEVHSRFQSLNADINKRGASY VHSRFQSLNADINKRGASYILKLANRLYGE R F Q K R G 1 1 2 1 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 11 1 1304.6837 P30740 P30740 70 80 SERPINB1 Leukocyte elastase inhibitor yes yes 2;3 0.0001411 80.688 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.86541 0.92475 55.034 7 Median 0.79503 0.85178 0.0053839 2 0 Median 1.0847 1.0138 13.002 2 0 Median 0.86541 0.98196 NaN 1 0 Median 0.51669 0.43335 NaN 1 0 Median 2.5005 2.7877 NaN 1 0 Median NaN NaN NaN 0 0 Median 21524000 11204000 10319000 13216000 6778400 6438100 3530600 1630700 1899900 2730100 1437500 1292600 780140 588100 192040 1266200 769720 496530 0 0 0 9765 2197 10161 48477;48478;48479;48480;48481;48482;48483 48380;48381;48382;48383;48384;48385;48386;48387;48388 48381 9 FQSNHMDMVR DIFQRGKICFIPRYRFQSNHMDMVRIESPE IPRYRFQSNHMDMVRIESPEEISLLPKTSW R F Q V R I 0 1 1 1 0 1 0 0 1 0 0 0 2 1 0 1 0 0 0 1 0 0 10 0 1263.5489 A0A0A6YYL1;A0A0U1RQM3;P49914;A0A0U1RR23 A0A0A6YYL1 61 70 ST20-MTHFS;MTHFS 5-formyltetrahydrofolate cyclo-ligase yes no 3 0.0032318 42.001 By MS/MS By MS/MS By matching 1 1 1 0.98263 0.93016 4.1914 3 Median 0.98263 0.93016 NaN 1 0 Median 1.1685 0.9927 NaN 1 0 Median 0.97415 0.91794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11516000 5545800 5969800 7768100 3815500 3952600 1711200 806790 904450 2036300 923560 1112700 0 0 0 0 0 0 0 0 0 9766 207 10162 48484;48485;48486 48389;48390;48391 48390 3 FQSSHHPTDITSLDQYVER IEDHSNRTRLAKLLRFQSSHHPTDITSLDQ HHPTDITSLDQYVERMKEKQDKIYFMAGSS R F Q E R M 0 1 0 2 0 2 1 0 2 1 1 0 0 1 1 3 2 0 1 1 0 0 19 0 2259.0556 P14625 P14625 512 530 HSP90B1 Endoplasmin yes yes 2;3;4 6.8601E-19 148.72 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 5 2 2 1 1.0284 0.95475 24.02 17 Median 0.93827 0.88743 8.3072 7 0 Median 1.0859 0.95475 17.551 5 0 Median 1.0087 1.0701 8.2838 2 0 Median NaN NaN NaN 0 0 Median 1.6753 1.7238 12.426 2 1 Median 1.1604 0.94718 NaN 1 0 Median 811650000 396880000 414770000 679660000 338020000 341640000 86116000 38900000 47217000 27443000 13196000 14247000 0 0 0 17534000 6249000 11285000 899710 512780 386930 9767 2006 10163 48487;48488;48489;48490;48491;48492;48493;48494;48495;48496;48497;48498;48499;48500;48501;48502;48503 48392;48393;48394;48395;48396;48397;48398;48399;48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412 48392 20 FQSTYEELTGWLR KALRTLEQARQLATKFQSTYEELTGWLREV TKFQSTYEELTGWLREVEEELATSGGQSPT K F Q L R E 0 1 0 0 0 1 2 1 0 0 2 0 0 1 0 1 2 1 1 0 0 0 13 0 1628.7835 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5671 5683 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00069924 76.143 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9768 1220 10164 48504 48413 48413 1 FQSVESGANNVVFIR EVGDIKASTEMRLRRFQSVESGANNVVFIR FQSVESGANNVVFIRTLGIEPEKLVHHILQ R F Q I R T 1 1 2 0 0 1 1 1 0 1 0 0 0 2 0 2 0 0 0 3 0 0 15 0 1665.8475 Q9NXG2;H3BNW0 Q9NXG2 117 131 THUMPD1 THUMP domain-containing protein 1 yes no 2 1.5278E-06 94.616 By MS/MS By matching 1 1 1.199 1.1133 6.5071 2 Median 1.0955 1.0633 NaN 1 0 Median 1.3122 1.1658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7185700 3411200 3774500 6830400 3267600 3562800 355240 143600 211640 0 0 0 0 0 0 0 0 0 0 0 0 9769 4165 10165 48505;48506 48414;48415 48414 2 FQSVPAQPGQTSPLLQYFGILLDQGQLNK NAPKGILRTPDTIRRFQSVPAQPGQTSPLL LQYFGILLDQGQLNKYESLELCRPVLQQGR R F Q N K Y 1 0 1 1 0 6 0 3 0 1 5 1 0 2 3 2 1 0 1 1 0 0 29 0 3186.6713 A0A087WVQ6;Q00610 A0A087WVQ6 405 433 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.0053133 22.56 By MS/MS 3 0.85745 0.75591 1.8659 3 Median NaN NaN NaN 0 0 Median 0.85745 0.75591 1.8659 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1755300 878640 876610 0 0 0 1755300 878640 876610 0 0 0 0 0 0 0 0 0 0 0 0 9770 44 10166 48507;48508;48509 48416 48416 1 FQTEIQTVNK IADTMVQIFKGLQERFQTEIQTVNKQFPCE GLQERFQTEIQTVNKQFPCEPFKFLEPTLR R F Q N K Q 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 10 0 1206.6245 P14868;H7BZ35 P14868 321 330 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00039696 98.033 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1085 1.0142 28.281 7 Median 1.1728 1.1261 13.089 2 0 Median 1.1982 1.0142 46.175 3 1 Median 0.90177 0.92231 NaN 1 0 Median 1.0965 0.94009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59529000 28540000 30988000 18501000 8410000 10091000 28098000 14032000 14066000 3229900 1583000 1646900 9699500 4515300 5184200 0 0 0 0 0 0 9771 2012 10167 48510;48511;48512;48513;48514;48515;48516 48417;48418;48419;48420;48421;48422;48423;48424 48422 8 FQTGFEILK EWGYRFTVTAGHLGRFQTGFEILKQMLSEE AGHLGRFQTGFEILKQMLSEERVVPHLPLA R F Q L K Q 0 0 0 0 0 1 1 1 0 1 1 1 0 2 0 0 1 0 0 0 0 0 9 0 1081.5808 O43149 O43149 2802 2810 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 2 0.038513 34.089 By MS/MS By matching 1 1 1.1945 1.116 8.3496 2 Median 1.0596 1.052 NaN 1 0 Median 1.3465 1.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4857200 2116100 2741100 3806200 1677700 2128500 1051000 438420 612560 0 0 0 0 0 0 0 0 0 0 0 0 9772 1555 10168 48517;48518 48425 48425 1 FQTIDLSPFLFTR PGIGRAVAEMVLKGRFQTIDLSPFLFTRFY GRFQTIDLSPFLFTRFYLGEKIQENNII__ R F Q T R F 0 1 0 1 0 1 0 0 0 1 2 0 0 3 1 1 2 0 0 0 0 0 13 0 1583.8348 Q96CU9 Q96CU9 461 473 FOXRED1 FAD-dependent oxidoreductase domain-containing protein 1 yes yes 2 0.00091964 62.303 By MS/MS By MS/MS By matching 1 1 1 0.8413 0.84587 18.078 3 Median NaN NaN NaN 0 0 Median 1.2522 1.0872 NaN 1 0 Median 0.73092 0.7655 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8413 0.84587 NaN 1 0 Median NaN NaN NaN 0 0 Median 2617500 1321500 1296000 0 0 0 1557600 709650 847980 828750 456810 371930 0 0 0 231120 155000 76125 0 0 0 9773 3622 10169 48519;48520;48521 48426;48427 48427 2 FQTMEEK DLKFIDTTSKFGHGRFQTMEEKKAFMGPLK TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE R F Q E K K 0 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 7 0 911.40587 P39023;G5E9G0 P39023 379 385 RPL3 60S ribosomal protein L3 yes no 2 0.018478 62.717 By matching By MS/MS By matching By matching By matching 3 5 1 2 2 1.1565 1.0988 15.99 13 Median 0.90758 0.87489 14.228 3 0 Median 1.317 1.1228 9.6455 5 0 Median 1.0876 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94295 0.91554 31.281 2 0 Median 1.2371 1.0383 8.5149 2 0 Median 27547000 12020000 15527000 2407600 1068200 1339400 17560000 7334300 10226000 1794000 809070 984920 0 0 0 4534500 2171900 2362600 1251300 636720 614540 9774 2281 10170 48522;48523;48524;48525;48526;48527;48528;48529;48530;48531;48532;48533;48534 48428;48429;48430;48431;48432 48430 5 FQVATDALK AQVAHADQQLRDLGKFQVATDALKSREPQA LRDLGKFQVATDALKSREPQAKPQLDLSID K F Q L K S 2 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 991.53385 A0A087WY61;K4DIE0;Q14980 Q14980 1700 1708 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00091113 91.069 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 2 1.0658 1.0156 28.918 8 Median NaN NaN NaN 0 0 Median 1.1526 1.0213 48.625 3 0 Median 0.92203 1.0099 NaN 1 0 Median 1.1863 1.0663 NaN 1 0 Median 1.0363 1.0873 NaN 1 0 Median 0.97479 0.83608 16.381 2 0 Median 224070000 112110000 111960000 0 0 0 13849000 6607600 7241200 107200000 56203000 51001000 8919200 4149700 4769500 81365000 39218000 42147000 12734000 5933900 6800000 9775 2905;77 10171 48535;48536;48537;48538;48539;48540;48541;48542 48433;48434;48435;48436;48437;48438;48439;48440;48441;48442;48443 48436 11 FQVDLVSENAGR DGLGRPLGPTPSQSRFQVDLVSENAGRAAA QSRFQVDLVSENAGRAAAAAAAAAAAAAAA R F Q G R A 1 1 1 1 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 2 0 0 12 0 1333.6626 P55011;G3XAL9 P55011 81 92 SLC12A2 Solute carrier family 12 member 2 yes no 2 0.0014787 78.655 By MS/MS By MS/MS 1 1 0.68014 0.56008 NaN 1 Median NaN NaN NaN 0 0 Median 0.68014 0.56008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7889300 4986600 2902600 0 0 0 7889300 4986600 2902600 0 0 0 0 0 0 0 0 0 0 0 0 9776 2490 10172 48543;48544 48444;48445 48444 2 FQVDPSGEIVELAK WLPARALVEEALAQRFQVDPSGEIVELAKG RFQVDPSGEIVELAKGACPWKEHLYHLESG R F Q A K G 1 0 0 1 0 1 2 1 0 1 1 1 0 1 1 1 0 0 0 2 0 0 14 0 1530.793 Q9HB07;F8VQQ3;F8VR84 Q9HB07 254 267 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 0.0056987 37.18 By MS/MS By MS/MS 1 1 0.779 0.69141 14.296 2 Median 0.82755 0.76496 NaN 1 0 Median 0.7333 0.62493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28082000 16138000 11945000 15592000 9034300 6558100 12490000 7103400 5386500 0 0 0 0 0 0 0 0 0 0 0 0 9777 4014 10173 48545;48546 48446;48447;48448 48448 3 FQVENSNR AAQVTIQSSGTFSTKFQVENSNRLLLQQVS SGTFSTKFQVENSNRLLLQQVSLPEVPGEY K F Q N R L 0 1 2 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 8 0 992.46756 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1294 1301 yes yes 2 0.03951 56.011 By MS/MS 1 0.052808 0.04449 NaN 1 Median NaN NaN NaN 0 0 Median 0.052808 0.04449 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 721520 663950 57571 0 0 0 721520 663950 57571 0 0 0 0 0 0 0 0 0 0 0 0 + 9778 734 10174 48547 48449 48449 1 FQVEQIGENKYR DEVTRQVAQCKCAKRFQVEQIGENKYRFFL AKRFQVEQIGENKYRFFLGNQFGDSQQLRL R F Q Y R F 0 1 1 0 0 2 2 1 0 1 0 1 0 1 0 0 0 0 1 1 0 0 12 1 1509.7576 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314;H0Y4F5;H0Y7I1;H0Y6T5 H3BPE1 7240 7251 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.0004706 73.435 By MS/MS By MS/MS 1 1 1.179 1.2905 20.422 2 Median 1.0792 1.117 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.288 1.491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13258000 6098600 7159400 8264000 4058700 4205300 0 0 0 4994100 2039900 2954100 0 0 0 0 0 0 0 0 0 9779 1220 10175 48548;48549 48450;48451 48451 2 FQVSVAADGAQK VLATSSGAGVFKMGRFQVSVAADGAQKEGK MGRFQVSVAADGAQKEGKNKSEDAKSVHFE R F Q Q K E 3 0 0 1 0 2 0 1 0 0 0 1 0 1 0 1 0 0 0 2 0 0 12 0 1219.6197 F5GWT4;Q9H4A3 F5GWT4 1612 1623 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 0.0097649 59.426 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9780 1001 10176 48550 48452 48452 1 FQVSVAADGAQKEGK VLATSSGAGVFKMGRFQVSVAADGAQKEGK FQVSVAADGAQKEGKNKSEDAKSVHFESST R F Q G K N 3 0 0 1 0 2 1 2 0 0 0 2 0 1 0 1 0 0 0 2 0 0 15 1 1533.7787 F5GWT4;Q9H4A3 F5GWT4 1612 1626 WNK1 Serine/threonine-protein kinase WNK1 yes no 3 0.021155 21.458 By MS/MS 2 1.0039 1.0573 26.308 2 Median 1.0039 1.0573 26.308 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2634300 1355600 1278800 2634300 1355600 1278800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9781 1001 10177 48551;48552 48453 48453 1 FQVVDSR IKTYEDIKENLESRRFQVVDSRATGRFRGT KENLESRRFQVVDSRATGRFRGTEPEPRDG R F Q S R A 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 7 0 849.43447 P25325;B1AH49 P25325 178 184 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2 0.034356 47.849 By MS/MS By MS/MS 1 1 1.1867 1.0701 3.2212 2 Median 1.1401 1.0947 NaN 1 0 Median 1.2352 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4250700 2154600 2096100 2996600 1577300 1419200 1254100 577270 676850 0 0 0 0 0 0 0 0 0 0 0 0 9782 2131 10178 48553;48554 48454;48455 48454 2 FQVYQLR IDVQESFCMEEKQNKFQVYQLRFQFLPHAY CMEEKQNKFQVYQLRFQFLPHAYYQQEKCL K F Q L R F 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 952.51305 O95602;B9ZVN9 O95602 1312 1318 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.0031886 121.87 By MS/MS 1 1.0064 1.0968 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0064 1.0968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13166000 6887900 6277700 0 0 0 0 0 0 13166000 6887900 6277700 0 0 0 0 0 0 0 0 0 9783 1781 10179 48555 48456;48457 48456 2 FRDASLVFK INIFLDGYVPTENLRFRDASLVFKVAETAN PTENLRFRDASLVFKVAETANEEEVKKMCM R F R F K V 1 1 0 1 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 1 1081.592 P61221;D6R9I9 P61221 324 332 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.0076588 88.819 By MS/MS 1 0.81122 0.81322 NaN 1 Median 0.81122 0.81322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15622000 8144800 7477100 15622000 8144800 7477100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9784 2550 10180 48556 48458 48458 1 FRDGPPLR SRPGDRRTGPPMGSRFRDGPPLRGSNMDFR GPPMGSRFRDGPPLRGSNMDFREPTEEERA R F R L R G 0 2 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 0 0 0 8 1 956.5192 Q15056 Q15056 184 191 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.011124 114.5 By MS/MS By MS/MS 1 1 0.90621 0.95403 9.2979 2 Median 0.95316 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86158 0.89332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17247000 8566300 8681100 6488000 3008900 3479100 0 0 0 10759000 5557400 5202000 0 0 0 0 0 0 0 0 0 9785 2922 10181 48557;48558 48459;48460;48461 48460 3 FRDPSSVGVAQHLTNTVFIDR DNAPLAFSSKVCYVKFRDPSSVGVAQHLTN VGVAQHLTNTVFIDRALIVVPCAEDD____ K F R D R A 1 2 1 2 0 1 0 1 1 1 1 0 0 2 1 2 2 0 0 3 0 0 21 1 2358.208 A0A087WY03;E5RFV3 A0A087WY03 69 89 SREK1 yes no 3;4 1.5322E-12 81.356 By MS/MS By matching 2 1 0.88657 0.96952 7.6241 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82622 0.922 9.9706 2 0 Median 1.0941 0.96952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38628000 20657000 17971000 0 0 0 0 0 0 38206000 20457000 17749000 421680 200200 221470 0 0 0 0 0 0 9786 75 10182 48559;48560;48561 48462;48463;48464;48465 48464 4 FRDSILR TQWRGMGLSLMRLDRFRDSILRSDEAVKPF LSLMRLDRFRDSILRSDEAVKPFGLKVSQL R F R L R S 0 2 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 1 905.5083 P49327;A0A0U1RQF0 P49327 516 522 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.076825 69.198 By MS/MS By matching 2 1 0.75184 0.81703 29.489 3 Median 0.64857 0.69917 22.03 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2445 1.0788 NaN 1 0 Median 11460000 7299700 4160500 10936000 7075400 3860300 0 0 0 0 0 0 0 0 0 0 0 0 524500 224290 300210 9787 2377 10183 48562;48563;48564 48466 48466 1 FREALGDAQQSVR SYYGNRAATLMMLGRFREALGDAQQSVRLD GRFREALGDAQQSVRLDDSFVRGHLREGKC R F R V R L 2 2 0 1 0 2 1 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 13 1 1475.7481 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7EK03;K7ER44;K7ELJ8;K7EJE9 Q99615 78 90 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2;3 4.4398E-05 134.04 By MS/MS By MS/MS By matching 3 1 1 1.2193 1.2611 14.084 5 Median 1.2152 1.1972 13.264 3 0 Median NaN NaN NaN 0 0 Median 1.2193 1.3169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3336 1.4273 NaN 1 0 Median NaN NaN NaN 0 0 Median 55392000 24763000 30630000 49623000 21910000 27713000 0 0 0 2940200 1400700 1539400 0 0 0 2829300 1452300 1376900 0 0 0 9788 3759 10184 48565;48566;48567;48568;48569 48467;48468;48469;48470;48471 48468 5 FREDHPDLIQNAK DFQREKQEFERNLARFREDHPDLIQNAKKS ARFREDHPDLIQNAKKSDIPEKPKTPQQLW R F R A K K 1 1 1 2 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 13 1 1581.79 P17480;E9PKP7 P17480 179 191 UBTF Nucleolar transcription factor 1 yes no 2;3;4 2.5845E-07 127.71 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 3 5 1.1723 1.1001 24.253 13 Median 0.58264 0.59282 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2445 1.3777 22.304 3 0 Median 1.1581 1.1001 2.3139 3 0 Median 0.87935 0.96759 2.2085 2 0 Median 1.4566 1.2791 16.788 4 1 Median 136570000 63145000 73426000 1238500 854090 384410 0 0 0 27880000 14149000 13731000 9430100 4136500 5293600 65433000 29888000 35545000 32589000 14117000 18472000 9789 2040 10185 48570;48571;48572;48573;48574;48575;48576;48577;48578;48579;48580;48581;48582;48583;48584;48585 48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484;48485;48486;48487;48488;48489;48490;48491 48476 20 FREDHPDLIQNAKK DFQREKQEFERNLARFREDHPDLIQNAKKS RFREDHPDLIQNAKKSDIPEKPKTPQQLWY R F R K K S 1 1 1 2 0 1 1 0 1 1 1 2 0 1 1 0 0 0 0 0 0 0 14 2 1709.8849 P17480;E9PKP7 P17480 179 192 UBTF Nucleolar transcription factor 1 yes no 4 0.0051176 29.491 By MS/MS By matching 1 1 0.44927 0.46371 72.5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65703 0.77427 NaN 1 0 Median 0.30721 0.27772 NaN 1 0 Median 4752900 3076700 1676200 0 0 0 0 0 0 0 0 0 0 0 0 4249100 2675700 1573300 503800 400940 102860 9790 2040 10186 48586;48587 48492 48492 1 FREIQQELSSGR ATNIEQIFRSFVVSKFREIQQELSSGRNEG VSKFREIQQELSSGRNEGQLNGETNTPIEG K F R G R N 0 2 0 0 0 2 2 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 12 1 1448.7372 P18583;J3QSZ5 P18583 17 28 SON Protein SON yes no 2;3 1.0515E-06 134.75 By matching By MS/MS By MS/MS 1 3 2 0.99546 1.0769 71.512 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17434 0.19818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.03 1.1142 13.468 3 0 Median 1.0203 0.91043 35.22 2 0 Median 36926000 17771000 19155000 0 0 0 0 0 0 2865500 2549000 316570 0 0 0 26628000 12222000 14405000 7432400 2999200 4433100 9791 2058 10187 48588;48589;48590;48591;48592;48593 48493;48494;48495;48496;48497;48498 48495 6 FRELAEEAAR TSEKSKQRLEAEAGRFRELAEEAARLRALA AEAGRFRELAEEAARLRALAEEAKRQRQLA R F R A R L 3 2 0 0 0 0 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1190.6044 Q15149 Q15149 1933 1942 PLEC Plectin yes yes 2;3 0.00045972 120.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1.0416 0.94471 15.429 4 Median 1.0755 1.1687 NaN 1 0 Median 1.0241 0.95981 NaN 1 0 Median 0.73097 0.80334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0594 0.92984 NaN 1 0 Median 63496000 14541000 48955000 17980000 5609600 12371000 32975000 6644600 26330000 6325600 1531100 4794500 947630 0 947630 0 0 0 5267600 755870 4511700 9792 2933 10188 48594;48595;48596;48597;48598;48599;48600;48601;48602 48499;48500;48501;48502;48503;48504;48505;48506;48507;48508;48509;48510 48501 12 FRFDYTNER NLATLKPSNKAFEKKFRFDYTNERALRRTL KAFEKKFRFDYTNERALRRTLQEDLVKDVL K F R E R A 0 2 1 1 0 0 1 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 9 1 1246.5731 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 920 928 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.012803 44.203 By MS/MS 1 0.30122 0.32585 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30122 0.32585 NaN 1 1 Median NaN NaN NaN 0 0 Median 7626200 5674500 1951800 0 0 0 0 0 0 0 0 0 0 0 0 7626200 5674500 1951800 0 0 0 9793 486 10189 48603 48511 48511 1 FRGPFTDVVTTNLK KVEQVLSLEPQHELKFRGPFTDVVTTNLKL KFRGPFTDVVTTNLKLGNPTDRNVCFKVKT K F R L K L 0 1 1 1 0 0 0 1 0 0 1 1 0 2 1 0 3 0 0 2 0 0 14 1 1593.8515 O95292;E5RK64 O95292 18 31 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 2;3 1.5367E-06 115.18 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.0284 0.97666 4.8102 7 Median 0.96955 1.0113 9.5147 2 0 Median 1.07 1.0052 5.2704 2 0 Median 0.94066 0.97591 1.4939 2 0 Median 1.1033 0.97666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51582000 25642000 25940000 38586000 19259000 19327000 1941500 945640 995880 10951000 5380700 5570600 102940 56761 46177 0 0 0 0 0 0 9794 1760 10190 48604;48605;48606;48607;48608;48609;48610 48512;48513;48514;48515;48516;48517;48518 48518 7 FRHENIIGINDIIR TYCQRTLREIKILLRFRHENIIGINDIIRA RFRHENIIGINDIIRAPTIEQMKDVYIVQD R F R I R A 0 2 2 1 0 0 1 1 1 5 0 0 0 1 0 0 0 0 0 0 0 0 14 1 1708.9373 P28482 P28482 78 91 MAPK1 Mitogen-activated protein kinase 1 yes yes 3 3.5441E-05 82.102 By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 1.0223 1.0144 35.766 7 Median 1.0991 1.1564 NaN 1 0 Median 1.0798 1.0011 16.375 2 0 Median 1.0373 1.0729 7.9265 2 0 Median 1.0223 0.89995 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.37302 0.41818 NaN 1 0 Median 29792000 13261000 16531000 15073000 6203400 8869200 1672300 711820 960460 10465000 4688500 5776300 979850 549190 430660 0 0 0 1602200 1108300 493920 9795 2166 10191 48611;48612;48613;48614;48615;48616;48617 48519;48520;48521 48519 3 FRHENVIGIR TYCQRTLREIQILLRFRHENVIGIRDILRA QILLRFRHENVIGIRDILRASTLEAMRDVY R F R I R D 0 2 1 0 0 0 1 1 1 2 0 0 0 1 0 0 0 0 0 1 0 0 10 1 1239.6836 P27361;E9PJF0;E9PQW4;E9PBK7 P27361 95 104 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase yes no 3 0.00011267 90.108 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0396 1.0796 21.64 4 Median 1.0275 1.0812 NaN 1 0 Median 1.4255 1.3312 NaN 1 0 Median 1.0518 1.078 NaN 1 0 Median 0.89481 0.78768 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39397000 18684000 20713000 10282000 4906700 5375500 5807300 2277300 3530000 17534000 8577000 8956800 5773900 2923300 2850600 0 0 0 0 0 0 9796 2153 10192 48618;48619;48620;48621 48522;48523;48524;48525;48526;48527;48528 48527 7 FRIDELEPR LLVLELQGLQKNMTRFRIDELEPRRPRYRV QKNMTRFRIDELEPRRPRYRVPDVLVADPP R F R P R R 0 2 0 1 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 9 1 1173.6142 Q14697;F5H6X6 Q14697 101 109 GANAB Neutral alpha-glucosidase AB yes no 2 6.245E-05 156.35 By MS/MS By matching 1 2 1.5113 1.639 74.436 3 Median 0.82787 0.91979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2766 2.5697 63.596 2 0 Median NaN NaN NaN 0 0 Median 32454000 16607000 15847000 29863000 15807000 14056000 0 0 0 0 0 0 0 0 0 2591300 800060 1791200 0 0 0 9797 2896 10193 48622;48623;48624 48529;48530;48531 48531 3 FRLDNTLGGTSEVIHRK IQKKLSRLSAEEQAKFRLDNTLGGTSEVIH LDNTLGGTSEVIHRKALQRIYADKAADIID K F R R K A 0 2 1 1 0 0 1 2 1 1 2 1 0 1 0 1 2 0 0 1 0 0 17 2 1942.0385 Q96ST3 Q96ST3 651 667 SIN3A Paired amphipathic helix protein Sin3a yes yes 4 7.2564E-06 59.728 By MS/MS 1 0.8679 0.9784 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8679 0.9784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11530000 6053100 5476700 0 0 0 0 0 0 11530000 6053100 5476700 0 0 0 0 0 0 0 0 0 9798 3737 10194 48625 48532 48532 1 FRLNLYELK AGLATDVQTVAQRLKFRLNLYELKEGRQIK VAQRLKFRLNLYELKEGRQIKPYTLMSMVA K F R L K E 0 1 1 0 0 0 1 0 0 0 3 1 0 1 0 0 0 0 1 0 0 0 9 1 1194.6761 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 69 77 PSMB3 Proteasome subunit beta type-3 yes no 3 0.0021823 66.27 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5417900 0 5417900 5417900 0 5417900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9799 2391 10195 48626 48533 48533 1 FRLPPGEYVVVPSTFEPNKEGDFVLR ARSEQFINLREVSTRFRLPPGEYVVVPSTF PSTFEPNKEGDFVLRFFSEKSAGTVELDDQ R F R L R F 0 2 1 1 0 0 3 2 0 0 2 1 0 3 4 1 1 0 1 4 0 0 26 2 2991.5494 P07384 P07384 487 512 CAPN1 Calpain-1 catalytic subunit yes yes 3 2.2552E-08 40.756 By MS/MS 1 0.53075 0.53537 NaN 1 Median 0.53075 0.53537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3860100 2268300 1591700 3860100 2268300 1591700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9800 1886 10196 48627 48534;48535;48536 48536 3 FRPDMEEEEAK MGSGSLAAMAVFEDKFRPDMEEEEAKNLVS FEDKFRPDMEEEEAKNLVSEAIAAGIFNDL K F R A K N 1 1 0 1 0 0 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 11 1 1379.6027 Q99436 Q99436 185 195 PSMB7 Proteasome subunit beta type-7 yes yes 2;3 6.1691E-05 84.17 By MS/MS By MS/MS 2 4 1.0388 0.96379 11.933 6 Median 0.92132 0.96516 19.054 2 1 Median 1.0423 0.96379 10.468 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27726000 13480000 14246000 12606000 6283500 6322900 15119000 7196200 7923200 0 0 0 0 0 0 0 0 0 0 0 0 9801 3744 10197 48628;48629;48630;48631;48632;48633 48537;48538;48539;48540;48541;48542 48540 6 FRPLNESEVNR ______________________________ VMCRFRPLNESEVNRGDKYIAKFQGEDTVV R F R N R G 0 2 2 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 1 1359.6895 P33176 P33176 15 25 KIF5B Kinesin-1 heavy chain yes yes 2;3 3.5858E-05 124.1 By MS/MS By MS/MS By MS/MS 2 2 2 0.94246 0.98471 6.7601 6 Median 0.8945 0.99381 2.9715 2 0 Median 0.98493 0.94955 6.8118 2 0 Median NaN NaN NaN 0 0 Median 1.0277 1.0061 11.667 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65095000 33139000 31956000 12709000 6698400 6010300 48637000 24537000 24100000 0 0 0 3749600 1903500 1846100 0 0 0 0 0 0 9802 2221 10198 48634;48635;48636;48637;48638;48639 48543;48544;48545;48546;48547;48548;48549 48547 7 FRPLNESEVNRGDK ______________________________ RFRPLNESEVNRGDKYIAKFQGEDTVVIAS R F R D K Y 0 2 2 1 0 0 2 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 14 2 1659.8329 P33176 P33176 15 28 KIF5B Kinesin-1 heavy chain yes yes 3;4 2.6558E-06 124.81 By MS/MS By MS/MS By matching 2 2 1 0.86653 0.8707 11.27 5 Median 0.84992 0.91541 7.0815 2 0 Median 0.85444 0.92675 20.716 2 0 Median NaN NaN NaN 0 0 Median 0.86653 0.86885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32271000 17070000 15202000 11098000 6320400 4777400 20047000 10334000 9712800 0 0 0 1126500 415100 711430 0 0 0 0 0 0 9803 2221 10199 48640;48641;48642;48643;48644 48550;48551;48552;48553;48554;48555;48556 48556 7 FRPLQLETINVTMAGK GKVKDILQNVFKLEKFRPLQLETINVTMAG RPLQLETINVTMAGKEVFLVMPTGGGKSLC K F R G K E 1 1 1 0 0 1 1 1 0 1 2 1 1 1 1 0 2 0 0 1 0 0 16 1 1816.9869 P46063;F8WA66;F8WD97;F5H2L2 P46063 92 107 RECQL ATP-dependent DNA helicase Q1 yes no 3 3.2067E-05 71.354 By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 0.97646 0.94882 17.644 10 Median 0.93019 0.95432 8.238 3 0 Median NaN NaN NaN 0 0 Median 0.77854 0.82863 30.722 3 0 Median 1.1004 1.009 7.8724 3 0 Plateau NaN NaN NaN 0 0 Median 1.0454 0.94335 NaN 1 0 Median 65086000 32212000 32874000 11244000 6018900 5224700 0 0 0 48030000 23435000 24596000 5402900 2535300 2867700 0 0 0 408920 223190 185730 9804 2337 10200;10201 48645;48646;48647;48648;48649;48650;48651;48652;48653;48654 48557;48558;48559;48560;48561 48558 1064 5 FRPMDNLSGGEK YLDGINYNCVAPGKRFRPMDNLSGGEKTVA GKRFRPMDNLSGGEKTVAALALLFAIHSYK R F R E K T 0 1 1 1 0 0 1 2 0 0 1 1 1 1 1 1 0 0 0 0 0 0 12 1 1349.6398 Q14683;G8JLG1;V9GY57 Q14683 1122 1133 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.00016578 105.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 3 3 0.99452 0.99275 31.225 14 Median NaN NaN NaN 0 0 Median 1.0628 0.99467 35.596 3 1 Median 0.76987 0.87547 2.0929 2 0 Median 1.0819 1.0444 55.812 3 2 Median 0.76206 0.86393 19.694 3 0 Median 1.1192 0.99415 5.2253 3 0 Median 65925000 34235000 31690000 0 0 0 10005000 5074100 4930400 5840800 3288700 2552100 6917000 2507400 4409700 39870000 22015000 17854000 3292400 1349300 1943200 9805 2889 10202;10203 48655;48656;48657;48658;48659;48660;48661;48662;48663;48664;48665;48666;48667;48668 48562;48563;48564;48565;48566;48567;48568;48569;48570;48571 48568 1577 10 FRPPETTER LKQYVETHWCAQSEKFRPPETTERAKIVIR CAQSEKFRPPETTERAKIVIRELLPNGLRE K F R E R A 0 2 0 0 0 0 2 0 0 0 0 0 0 1 2 0 2 0 0 0 0 0 9 1 1131.5673 Q96P70 Q96P70 96 104 IPO9 Importin-9 yes yes 2 0.02579 57.59 By MS/MS 1 1.0425 1.0051 NaN 1 Median NaN NaN NaN 0 0 Median 1.0425 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5505500 2222900 3282500 0 0 0 5505500 2222900 3282500 0 0 0 0 0 0 0 0 0 0 0 0 9806 3711 10204 48669 48572 48572 1 FRPVPLGQTFLGIK LHVNPYIGLFFFDGRFRPVPLGQTFLGIKC RFRPVPLGQTFLGIKCANKMQQLNNMDEVC R F R I K C 0 1 0 0 0 1 0 2 0 1 2 1 0 2 2 0 1 0 0 1 0 0 14 1 1571.9188 Q8N3C0 Q8N3C0 676 689 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2;3 2.0251E-06 116.77 By MS/MS By matching By MS/MS 4 1 1 0.77982 0.81633 17.902 6 Median 0.73336 0.74504 21.276 4 0 Median 0.92983 0.89093 NaN 1 0 Median 0.82769 0.95576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23428000 12651000 10777000 19852000 10547000 9305800 2126500 1149100 977370 1449000 955060 493930 0 0 0 0 0 0 0 0 0 9807 3366 10205 48670;48671;48672;48673;48674;48675 48573;48574;48575;48576 48573 4 FRQDLMNIAGTTLSSK ALLSSAVDHGSDEVKFRQDLMNIAGTTLSS RQDLMNIAGTTLSSKLLTHHKDHFTKLAVE K F R S K L 1 1 1 1 0 1 0 1 0 1 2 1 1 1 0 2 2 0 0 0 0 0 16 1 1780.9142 P78371;F5GWF6;F8VQ14 P78371 155 170 CCT2 T-complex protein 1 subunit beta yes no 2;3 1.9457E-07 131.26 By MS/MS By matching By MS/MS By matching 5 3 1 1 1.2023 1.1297 15.778 10 Median 1.3029 1.2893 12.726 5 0 Linear 1.2114 1.1062 6.2263 3 0 Median 1.4882 1.6718 NaN 1 0 Median 1.1604 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92202000 38531000 53672000 70204000 29787000 40416000 5518200 2514000 3004200 15563000 5791100 9771600 917840 438120 479710 0 0 0 0 0 0 9808 2644 10206 48676;48677;48678;48679;48680;48681;48682;48683;48684;48685 48577;48578;48579;48580;48581;48582;48583;48584;48585 48583 9 FRQDWGPITSISFR QVIIHNIKFNETLMKFRQDWGPITSISFRT KFRQDWGPITSISFRTDGHPVMAAGSPCGH K F R F R T 0 2 0 1 0 1 0 1 0 2 0 0 0 2 1 2 1 1 0 0 0 0 14 1 1708.8685 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 229 242 WDR36 WD repeat-containing protein 36 yes no 3 0.0043085 31.827 By MS/MS By matching 1 1 0.9886 1.0003 5.22 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83435 0.96408 NaN 1 0 Median 1.1714 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1714600 768710 945900 0 0 0 0 0 0 1586200 701700 884490 128420 67017 61408 0 0 0 0 0 0 9809 188 10207 48686;48687 48586;48587 48587 2 FRQHLLGTSPER RFVSLRDGFVCALLRFRQHLLGTSPERVVQ LLRFRQHLLGTSPERVVQHLCQRRVEPPEL R F R E R V 0 2 0 0 0 1 1 1 1 0 2 0 0 1 1 1 1 0 0 0 0 0 12 1 1439.7633 Q8WUY1;H0YAR9 Q8WUY1 151 162 THEM6 Protein THEM6 yes no 3 0.033396 21.301 By MS/MS By matching By matching 1 1 1 0.75622 0.88522 17.782 3 Median 0.67625 0.70883 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86957 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75622 0.88522 NaN 1 0 Median NaN NaN NaN 0 0 Median 6590400 3569000 3021400 1266300 718050 548300 0 0 0 1661800 903350 758420 0 0 0 3662300 1947600 1714700 0 0 0 9810 3499 10208 48688;48689;48690 48588;48589 48589 2 FRQQRPLEFR EAAAFDDEWRRETSRFRQQRPLEFRRLESS RETSRFRQQRPLEFRRLESSGAGGRRAEGP R F R F R R 0 3 0 0 0 2 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 10 2 1375.7473 Q15773 Q15773 203 212 MLF2 Myeloid leukemia factor 2 yes yes 3 0.020838 60.518 By MS/MS 2 0.84047 1.0074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84047 1.0074 NaN 1 1 Median NaN NaN NaN 0 0 Median 2727600 1394300 1333300 0 0 0 0 0 0 0 0 0 0 0 0 2727600 1394300 1333300 0 0 0 9811 2969 10209 48691;48692 48590;48591 48590 2 FRSHEGETAYIR KEDMTYAVRKLDNTKFRSHEGETAYIRVKV NTKFRSHEGETAYIRVKVDGPRSPSYGRSR K F R I R V 1 2 0 0 0 0 2 1 1 1 0 0 0 1 0 1 1 0 1 0 0 0 12 1 1464.711 J3KTL2;Q07955;J3KSR8 J3KTL2 180 191 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3 0.00022004 62.088 By MS/MS 2 1.0332 1.1117 9.6541 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0332 1.1117 9.6541 2 0 Median NaN NaN NaN 0 0 Median 7266700 3942200 3324500 0 0 0 0 0 0 0 0 0 0 0 0 7266700 3942200 3324500 0 0 0 9812 1337 10210 48693;48694 48592;48593;48594;48595 48592 4 FRTDEADDVK IVLTDYEYVILNILRFRTDEADDVKFAVRE LNILRFRTDEADDVKFAVRERYPLDHARAA R F R V K F 1 1 0 3 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 1 1194.5517 G3V4D9;G3V5V3;O60524 G3V4D9 95 104 NEMF Nuclear export mediator factor NEMF yes no 2 0.0018956 77.677 By MS/MS 1 1.2757 1.2038 NaN 1 Median NaN NaN NaN 0 0 Median 1.2757 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2969800 1084200 1885600 0 0 0 2969800 1084200 1885600 0 0 0 0 0 0 0 0 0 0 0 0 9813 1115 10211 48695 48596 48596 1 FRTEAAAAAPQR QVHPFHVYPQPGMQRFRTEAAAAAPQRSQS MQRFRTEAAAAAPQRSQSPLRGMPETTQPD R F R Q R S 5 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 12 1 1287.6684 O95817;C9JFK9 O95817 122 133 BAG3 BAG family molecular chaperone regulator 3 yes no 3 0.036728 20.463 By MS/MS 1 0.93904 0.9628 NaN 1 Median 0.93904 0.9628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 476720 228600 248120 476720 228600 248120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9814 1796 10212 48696 48597 48597 1 FRVQVSESGVHRPHVAGIHGR HYGPIPGIPVGTMWRFRVQVSESGVHRPHV ESGVHRPHVAGIHGRSNDGAYSLVLAGGYE R F R G R S 1 3 0 0 0 1 1 3 3 1 0 0 0 1 1 2 0 0 0 4 0 0 21 2 2324.2363 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 445 465 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 5 0.018642 16.506 By MS/MS 2 0.74847 0.92375 0.99467 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74847 0.92375 0.99467 2 0 Median NaN NaN NaN 0 0 Median 10449000 5280500 5168500 0 0 0 0 0 0 0 0 0 0 0 0 10449000 5280500 5168500 0 0 0 9815 20 10213 48697;48698 48598 48598 1 FSAATYLMDK NGIALMMWNTFLVKRFSAATYLMDKVGKSP FLVKRFSAATYLMDKVGKSPKDRLCRRDVG R F S D K V 2 0 0 1 0 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 10 0 1145.5427 Q9H2M9 Q9H2M9 1066 1075 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.0047945 51.949 By MS/MS 1 1.1981 1.1521 NaN 1 Median 1.1981 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6036100 2597900 3438200 6036100 2597900 3438200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9816 3945 10214 48699 48599;48600 48600 2 FSADEFFIPR LQSLLFHFLDEWLYKFSADEFFIPRKLCAI EWLYKFSADEFFIPRKLCAIVF________ K F S P R K 1 1 0 1 0 0 1 0 0 1 0 0 0 3 1 1 0 0 0 0 0 0 10 0 1227.5924 A0A087WW18;D3DPQ2;H7C3R6;A0A087X0V4;A8K0B5;Q8IWT0 A0A087WW18 56 65 ZBTB8OS Protein archease yes no 2 0.0025713 59.8 By MS/MS By MS/MS By matching 2 1 1 0.98089 0.86711 18.455 4 Median 1.0472 1.0095 28.116 2 0 Median 1.0361 0.86741 NaN 1 0 Median 0.92861 0.86681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5347600 2623300 2724300 4438900 2200600 2238300 543070 246370 296710 365640 176330 189310 0 0 0 0 0 0 0 0 0 9817 50 10215 48700;48701;48702;48703 48601;48602 48601 2 FSAELIQHIPLSLR QVDGQYFVCNMDDFKFSAELIQHIPLSLRV KFSAELIQHIPLSLRVRYVFCTAPINKKQP K F S L R V 1 1 0 0 0 1 1 0 1 2 3 0 0 1 1 2 0 0 0 0 0 0 14 0 1622.9144 Q8IYB8 Q8IYB8 556 569 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 3 0.029399 18.833 By matching By MS/MS By matching 1 1 1 0.8229 0.87663 19.645 3 Median 0.65321 0.65298 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8229 0.87663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1694 0.94769 NaN 1 0 Median 4184100 2298700 1885400 495950 286070 209880 0 0 0 2846700 1701100 1145600 0 0 0 0 0 0 841510 311550 529960 9818 3342 10216 48704;48705;48706 48603;48604 48604 2 FSAFLDK DLSTLKCYPPGQPEKFSAFLDKVVGLQK__ YPPGQPEKFSAFLDKVVGLQK_________ K F S D K V 1 0 0 1 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 A0A096LP10;A0A087WT15 A0A096LP10 150 156 ALG13 yes no 1;2 0.0011292 104.45 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 3 2 4 3 6 0.55893 0.46337 135.08 21 Median 0.078114 0.07071 129.47 3 1 Median 0.94013 0.79651 154.17 3 0 Median 1.0547 1.0202 6.487 2 0 Median 0.41817 0.35644 188.61 4 0 Median 0.3761 0.38331 61.567 3 0 Median 0.45638 0.37837 143.66 6 0 Median 334550000 235580000 98966000 31604000 25582000 6021700 32127000 19133000 12994000 28929000 14283000 14646000 45505000 34552000 10952000 80538000 48222000 32316000 115840000 93808000 22035000 9819 142 10217 48707;48708;48709;48710;48711;48712;48713;48714;48715;48716;48717;48718;48719;48720;48721;48722;48723;48724;48725;48726;48727 48605;48606;48607;48608;48609;48610;48611;48612 48610 8 FSAGADIR DHTIKAIVICGAEGKFSAGADIRGFSAPRT ICGAEGKFSAGADIRGFSAPRTFGLTLGHV K F S I R G 2 1 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 835.41882 Q08426 Q08426 57 64 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.036811 37.558 By MS/MS 1 1.5092 1.2881 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5092 1.2881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 589890 254130 335770 0 0 0 0 0 0 0 0 0 589890 254130 335770 0 0 0 0 0 0 9820 2740 10218 48728 48613 48613 1 FSAHYDAVEAELK RIAEENIMKSNIDKKFSAHYDAVEAELKSS KKFSAHYDAVEAELKSSTVGLVTLNDMKAK K F S L K S 3 0 0 1 0 0 2 0 1 0 1 1 0 1 0 1 0 0 1 1 0 0 13 0 1478.7042 Q14320;B0S8I6;Q9Y247 Q14320 49 61 FAM50A;FAM50B Protein FAM50A;Protein FAM50B no no 2;3 8.299E-05 150.46 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 3 2 1.2722 1.0751 13.752 11 Median 1.1985 1.1159 9.0114 2 0 Median 1.4191 1.2636 11.789 2 0 Median 1.3015 1.3429 0.8687 2 0 Median 1.2487 1.0564 5.5365 3 0 Median NaN NaN NaN 0 0 Median 1.1414 0.96202 0.69591 2 0 Median 94018000 37541000 56477000 18266000 7732200 10533000 988610 438170 550440 67495000 26202000 41293000 5416700 2379100 3037600 0 0 0 1851600 789760 1061900 9821 2873;4373 10219 48729;48730;48731;48732;48733;48734;48735;48736;48737;48738;48739 48614;48615;48616;48617;48618;48619;48620;48621 48617 8 FSALQPPAPSGSTPSTPVEFDSRR SETDALRSSASSLNRFSALQPPAPSGSTPS SGSTPSTPVEFDSRRTLTSRGSMGREKNDK R F S R R T 2 2 0 1 0 1 1 1 0 0 1 0 0 2 5 5 2 0 0 1 0 0 24 1 2530.2452 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1290 1313 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 3 1.015E-20 95.5 By MS/MS 1 0.52621 0.56273 NaN 1 Median 0.52621 0.56273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19418000 10775000 8642700 19418000 10775000 8642700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9822 300 10220 48740 48622 48622 1 FSALQQAVPTESTDNR AASEAARPATSTLNRFSALQQAVPTESTDN SALQQAVPTESTDNRRVVQRSSLSRERGEK R F S N R R 2 1 1 1 0 2 1 0 0 0 1 0 0 1 1 2 2 0 0 1 0 0 16 0 1762.8486 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 960 975 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 1.094E-07 90.913 By MS/MS By MS/MS 1 1 0.92088 0.8209 12.105 2 Median 0.95271 0.89426 NaN 1 1 Median 0.89012 0.75355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53799000 28169000 25631000 11278000 5870000 5408000 42521000 22299000 20223000 0 0 0 0 0 0 0 0 0 0 0 0 9823 894 10221 48741;48742 48623;48624 48623 2 FSALQQAVPTESTDNRR AASEAARPATSTLNRFSALQQAVPTESTDN ALQQAVPTESTDNRRVVQRSSLSRERGEKA R F S R R V 2 2 1 1 0 2 1 0 0 0 1 0 0 1 1 2 2 0 0 1 0 0 17 1 1918.9497 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 960 976 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 1.6624E-12 139.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 3 3 2 1.0028 1.0339 38.06 21 Median 0.93032 0.99489 30.465 4 0 Median 1.0028 0.90434 14.504 5 0 Median 1.0454 1.3206 65.995 4 0 Median 0.96221 0.87134 43.995 3 0 Median 1.4657 1.5855 7.605 3 0 Plateau 0.87455 0.77901 1.885 2 0 Median 349640000 169580000 180060000 159060000 76571000 82487000 65284000 31821000 33463000 72351000 34999000 37351000 30978000 16371000 14607000 16301000 7035700 9265600 5665300 2778800 2886500 9824 894 10222 48743;48744;48745;48746;48747;48748;48749;48750;48751;48752;48753;48754;48755;48756;48757;48758;48759;48760;48761;48762;48763 48625;48626;48627;48628;48629;48630;48631;48632;48633;48634;48635;48636;48637;48638;48639;48640;48641;48642;48643;48644;48645;48646;48647 48638 23 FSAMHEFQNLHAQSK RKPDIVTPNGLNVKKFSAMHEFQNLHAQSK FSAMHEFQNLHAQSKARIQEFVRGHFYGHL K F S S K A 2 0 1 0 0 2 1 0 2 0 1 1 1 2 0 2 0 0 0 0 0 0 15 0 1773.8257 P13807 P13807 287 301 GYS1 Glycogen [starch] synthase, muscle yes yes 3 0.056183 11.044 By MS/MS 1 1.1339 1.0305 NaN 1 Median 1.1339 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10904000 5514100 5389700 10904000 5514100 5389700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9825 1997 10223 48764 48648 48648 1 FSASGELGNGNIK IGDAVVISCAKDGVKFSASGELGNGNIKLS VKFSASGELGNGNIKLSQTSNVDKEEEAVT K F S I K L 1 0 2 0 0 0 1 3 0 1 1 1 0 1 0 2 0 0 0 0 0 0 13 0 1292.6361 P12004 P12004 169 181 PCNA Proliferating cell nuclear antigen yes yes 2 9.5299E-54 237.44 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2807 1.1421 23.205 6 Median 1.2071 1.0864 NaN 1 1 Median 1.7078 1.4262 29.766 2 1 Median 1.0463 0.9956 20.892 2 0 Median 1.3589 1.1303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 870550000 360290000 510260000 541710000 225700000 316020000 184260000 70654000 113610000 84918000 39409000 45509000 59662000 24532000 35130000 0 0 0 0 0 0 9826 1974 10224 48765;48766;48767;48768;48769;48770 48649;48650;48651;48652;48653;48654;48655;48656;48657;48658 48657 10 FSATEVTNK KIHTLELKLEESHNRFSATEVTNKTLAAEM EESHNRFSATEVTNKTLAAEMQELRVRLAE R F S N K T 1 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 2 0 0 1 0 0 9 0 995.49238 Q8N163;H0YB24;G3V119 Q8N163 847 855 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.00082536 95.815 By matching By MS/MS By MS/MS 1 2 3 0.91934 0.87507 10.812 6 Median 1.026 1.0177 NaN 1 0 Median 1.0806 0.94429 7.8112 2 0 Median 0.81198 0.81566 4.8795 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20116000 9560900 10555000 2546100 1187300 1358800 13326000 6225700 7100000 4244000 2147900 2096100 0 0 0 0 0 0 0 0 0 9827 3354 10225 48771;48772;48773;48774;48775;48776 48659;48660;48661 48660 3 FSAVALCK KVCREFTEREQGEVRFSAVALCKAA_____ REQGEVRFSAVALCKAA_____________ R F S C K A 2 0 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 0 894.46332 P09936;D6RE83 P09936 214 221 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0048619 79.116 By MS/MS By MS/MS 1 2 1.362 1.2304 18.605 3 Plateau 1.1774 1.0956 NaN 1 0 Median 1.3124 1.0955 26.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17232000 7565900 9665900 7037200 3222200 3815100 10195000 4343700 5850800 0 0 0 0 0 0 0 0 0 0 0 0 9828 1923 10226 48777;48778;48779 48662;48663;48664 48664 3 FSAYNYR QVLSLYRAMLRESKRFSAYNYRTYAVRRIR AMLRESKRFSAYNYRTYAVRRIRDAFRENK R F S Y R T 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 7 0 919.41882 Q9HD34;C9JY28;C9JRX8;F5H189;C9J799 Q9HD34 23 29 LYRM4 LYR motif-containing protein 4 yes no 2 0.0005142 141.55 By MS/MS By MS/MS By MS/MS 1 1 1 1.2379 1.0102 13.252 3 Median 1.0393 1.0102 NaN 1 0 Median 1.4683 1.2471 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2379 0.97653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20285000 8830400 11455000 11193000 5140300 6052500 8022200 3253300 4768900 0 0 0 1070400 436810 633550 0 0 0 0 0 0 9829 4036 10227 48780;48781;48782 48665;48666;48667;48668;48669 48667 5 FSDDKDGVLPVK LLEKYKQENTRTNVRFSDDKDGVLPVKTFL NVRFSDDKDGVLPVKTFLEYLEYEKDVLNI R F S V K T 0 0 0 3 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 2 0 0 12 1 1318.6769 Q9H2M9 Q9H2M9 700 711 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 3 0.026171 23.118 By MS/MS 1 0.89387 0.88775 NaN 1 Median 0.89387 0.88775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3886300 1883800 2002600 3886300 1883800 2002600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9830 3945 10228 48783 48670 48670 1 FSDFLGLYEK SLPLFRSKQFAVKRRFSDFLGLYEKLSEKH AVKRRFSDFLGLYEKLSEKHSQNGFIVPPP R F S E K L 0 0 0 1 0 0 1 1 0 0 2 1 0 2 0 1 0 0 1 0 0 0 10 0 1217.5968 Q13596 Q13596 187 196 SNX1 Sorting nexin-1 yes yes 2 0.01267 41.029 By MS/MS By matching By matching 1 1 1 1.1227 1.1774 9.5161 3 Plateau 1.1227 1.0848 NaN 1 0 Median 1.0935 1.3115 NaN 1 0 Median 1.1124 1.1774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2684100 1162400 1521700 2005200 826660 1178600 279420 141130 138280 399410 194560 204850 0 0 0 0 0 0 0 0 0 9831 2829 10229 48784;48785;48786 48671;48672 48672 2 FSDFLLDPYK VVEDELVKKYSLPSKFSDFLLDPYKYMTLN SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS K F S Y K Y 0 0 0 2 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 10 0 1243.6125 Q9UIG0 Q9UIG0 288 297 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.013464 43.246 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.97367 0.84167 14.267 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6483 0.72264 NaN 1 1 Median 0.92463 0.81758 13.186 2 0 Median 0.99433 1.0258 NaN 1 0 Median 0.97367 0.84167 NaN 1 0 Median 5381200 2929500 2451600 0 0 0 0 0 0 2488200 1629800 858380 345240 169110 176120 2266100 987680 1278400 281650 142960 138690 9832 4290 10230 48787;48788;48789;48790;48791 48673;48674 48674 2 FSDHVALLSVFQAWDDAR GKRLGYIHRNFAGNRFSDHVALLSVFQAWD HVALLSVFQAWDDARMGGEEAEIRFCEHKR R F S A R M 3 1 0 3 0 1 0 0 1 0 2 0 0 2 0 2 0 1 0 2 0 0 18 0 2076.0065 Q08211 Q08211 912 929 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.1194E-05 52.928 By matching By MS/MS By MS/MS 1 2 1 1.1229 1.2109 5.0497 4 Median NaN NaN NaN 0 0 Median 1.3823 1.2312 NaN 1 0 Median 1.0773 1.1713 7.7407 2 0 Median NaN NaN NaN 0 0 Median 1.1205 1.1909 NaN 1 0 Median NaN NaN NaN 0 0 Median 6807100 3110300 3696800 0 0 0 101070 44714 56357 4646700 2163600 2483000 0 0 0 2059400 901920 1157400 0 0 0 9833 2736 10231 48792;48793;48794;48795 48675;48676;48677 48675 3 FSDIQIR ALFNRLVPSVNGVRRFSDIQIRRLKRLGIE PSVNGVRRFSDIQIRRLKRLGIEKTDPTTL R F S I R R 0 1 0 1 0 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 7 0 877.46577 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 489 495 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0054115 97.071 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.2428 1.055 12.923 6 Median 1.1213 1.0965 13.849 2 0 Median 1.2672 1.0563 NaN 1 0 Median 0.83714 0.89708 NaN 1 0 Median 1.5003 1.2786 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2818 1.0537 NaN 1 0 Median 31664000 14577000 17087000 11334000 5312500 6021700 14587000 6674100 7913100 3810800 1752300 2058600 1295600 574320 721260 0 0 0 636670 264160 372510 9834 1968 10232 48796;48797;48798;48799;48800;48801 48678;48679;48680;48681 48678 4 FSDQFPLPLKER LHGFKNQVGDENWRRFSDQFPLPLKERLAA WRRFSDQFPLPLKERLAAFYGV________ R F S E R L 0 1 0 1 0 1 1 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 12 1 1475.7773 Q92973;S4R398 Q92973 880 891 TNPO1 Transportin-1 yes no 3 0.073662 12.36 By MS/MS 1 0.83444 0.85323 NaN 1 Median 0.83444 0.85323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2180700 1246500 934150 2180700 1246500 934150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9835 3570 10233 48802 48682 48682 1 FSDSYASVIK LLETCSIALVGKYTKFSDSYASVIKALEHS GKYTKFSDSYASVIKALEHSALAINHKLEI K F S I K A 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 1 0 0 10 0 1115.5499 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 P17812 310 319 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.00064301 72.607 By MS/MS 2 1.4912 1.428 28.996 2 Median 1.4912 1.428 28.996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36452000 15532000 20920000 36452000 15532000 20920000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9836 2046 10234 48803;48804 48683 48683 1 FSDVLHTIK MPVIYHGHTLTTKIKFSDVLHTIKEHAFVA LTTKIKFSDVLHTIKEHAFVASEYPVILSI K F S I K E 0 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 9 0 1058.576 P19174 P19174 390 398 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.030308 49.418 By MS/MS 1 0.66451 0.56354 NaN 1 Median NaN NaN NaN 0 0 Median 0.66451 0.56354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7724400 4698900 3025500 0 0 0 7724400 4698900 3025500 0 0 0 0 0 0 0 0 0 0 0 0 9837 2062 10235 48805 48684 48684 1 FSEAEQR FATVRELVSGGRSVRFSEAEQRCVSRGFTP VSGGRSVRFSEAEQRCVSRGFTPAQFQAAL R F S Q R C 1 1 0 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 7 0 865.393 P33993 P33993 677 683 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.06116 47.849 By MS/MS 1 0.72016 0.75592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72016 0.75592 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1282000 752020 529970 0 0 0 0 0 0 1282000 752020 529970 0 0 0 0 0 0 0 0 0 9838 2225 10236 48806 48685 48685 1 FSEGEATLR MEESLLLFEAMRKGKFSEGEATLRMKLVME AMRKGKFSEGEATLRMKLVMEDGKMDPVAY K F S L R M 1 1 0 0 0 0 2 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1008.4876 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQQ5;A0A1B0GTT3 P47897 395 403 QARS Glutamine--tRNA ligase yes no 2 0.00013986 127.56 By MS/MS By MS/MS 1 1 1.0612 0.96462 3.1345 2 Median 0.98671 0.94348 NaN 1 0 Median 1.1413 0.98624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13237000 6359500 6877900 5288700 2516300 2772300 7948700 3843100 4105500 0 0 0 0 0 0 0 0 0 0 0 0 9839 2356 10237 48807;48808 48686;48687;48688 48688 3 FSEGNILELLHR VKQAMQKHLLQGWLRFSEGNILELLHRLDV WLRFSEGNILELLHRLDVENSSEVAVSVLN R F S H R L 0 1 1 0 0 0 2 1 1 1 3 0 0 1 0 1 0 0 0 0 0 0 12 0 1426.7569 Q9BPX3 Q9BPX3 276 287 NCAPG Condensin complex subunit 3 yes yes 3 0.02987 20.84 By MS/MS By matching By matching By matching By matching By matching 1 2 2 1 1 2 1.0498 1.0087 33.391 9 Median 1.0498 1.0486 NaN 1 0 Median 0.71059 0.62383 53.097 2 0 Median 1.0358 1.1014 12.43 2 0 Median 1.1877 1.0537 NaN 1 0 Median 1.083 1.1458 NaN 1 0 Median 0.86287 0.73063 23.483 2 0 Median 10072000 4944000 5128000 1493500 710510 783010 5642800 2695600 2947200 1119800 644500 475280 156040 66412 89626 551510 234890 316630 1108300 592130 516180 9840 3778 10238 48809;48810;48811;48812;48813;48814;48815;48816;48817 48689;48690 48689 2 FSEGTSADR CIIFMDEIDAIGGRRFSEGTSADREIQRTL AIGGRRFSEGTSADREIQRTLMELLNQMDG R F S D R E 1 1 0 1 0 0 1 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 9 0 968.41994 A0A087X2I1;P62333;H0YJX2 A0A087X2I1 257 265 PSMC6 26S protease regulatory subunit 10B yes no 2 0.0073226 51.854 By matching By MS/MS 1 1 1.1101 1.0294 5.8335 2 Median 1.0686 1.0728 NaN 1 0 Median 1.1532 0.98783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1395100 658890 736210 126420 58960 67460 1268700 599930 668750 0 0 0 0 0 0 0 0 0 0 0 0 9841 138 10239 48818;48819 48691 48691 1 FSEGTSADREIQR CIIFMDEIDAIGGRRFSEGTSADREIQRTL RRFSEGTSADREIQRTLMELLNQMDGFDTL R F S Q R T 1 2 0 1 0 1 2 1 0 1 0 0 0 1 0 2 1 0 0 0 0 0 13 1 1494.7063 A0A087X2I1;P62333;H0YJX2 A0A087X2I1 257 269 PSMC6 26S protease regulatory subunit 10B yes no 3 0.00048365 52.576 By MS/MS By matching 1 1 0.84489 0.79867 21.545 2 Median 0.88398 0.9301 NaN 1 0 Median 0.80753 0.68581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10562000 6776600 3785000 10109000 6569400 3539700 452490 207170 245310 0 0 0 0 0 0 0 0 0 0 0 0 9842 138 10240 48820;48821 48692;48693 48693 2 FSEILETSSTK SHERARYEDPTLRNRFSEILETSSTKLHPD LRNRFSEILETSSTKLHPDVPTDKNLKPNP R F S T K L 0 0 0 0 0 0 2 0 0 1 1 1 0 1 0 3 2 0 0 0 0 0 11 0 1240.6187 Q6W2J9;H7BYY2;A1A564 Q6W2J9 764 774 BCOR BCL-6 corepressor yes no 2 8.9619E-05 150.08 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.83413 0.69141 82.842 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85044 0.93829 NaN 1 0 Median 0.46336 0.43823 128.32 2 0 Median 0.22871 0.23605 NaN 1 0 Median 0.83413 0.69141 NaN 1 0 Median 22536000 13987000 8549300 0 0 0 0 0 0 12555000 6973300 5581600 3552400 2143400 1409000 5235500 4267800 967720 1193300 602310 591040 9843 3191 10241 48822;48823;48824;48825;48826 48694;48695;48696;48697 48695 4 FSEIPMK CNRYFRQIFSCGRLRFSEIPMKLAGLLQHP IFSCGRLRFSEIPMKLAGLLQHPDPIVINH R F S M K L 0 0 0 0 0 0 1 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 7 0 850.42588 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 295 301 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.054459 50.966 By MS/MS 1 0.79615 0.78512 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79615 0.78512 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7740100 3166000 4574100 0 0 0 0 0 0 7740100 3166000 4574100 0 0 0 0 0 0 0 0 0 9844 655 10242 48827 48698 48698 1 FSELTAEK IELIAIATGGRIVPRFSELTAEKLGFAGLV GGRIVPRFSELTAEKLGFAGLVQEISFGTT R F S E K L 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 8 0 923.46001 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 345 352 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.00098289 121.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1.1893 0.98738 13.259 5 Median 1.2474 1.1588 NaN 1 1 Median 1.1893 0.98627 NaN 1 0 Median 1.2778 1.3149 NaN 1 0 Median 1.1492 0.98738 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.18 0.97533 NaN 1 0 Median 119050000 54593000 64456000 39602000 17590000 22012000 72587000 33855000 38732000 2577900 1178700 1399200 975390 490890 484490 0 0 0 3305900 1478400 1827500 9845 2364 10243 48828;48829;48830;48831;48832;48833 48699;48700;48701;48702;48703;48704;48705;48706 48699 8 FSELVMK VLLQDSLLATASSPKFSELVMKCLWRMVRL LATASSPKFSELVMKCLWRMVRLLPDTINS K F S M K C 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 7 0 852.44153 Q14008 Q14008 1705 1711 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.020057 60.788 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2677 1.3395 18.355 4 Linear NaN NaN NaN 0 0 Median 1.0532 0.9133 NaN 1 0 Median 1.2586 1.4001 NaN 1 0 Median 1.1767 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1698 1.0039 NaN 1 0 Median 11201000 5135300 6065300 0 0 0 714210 386680 327530 6391700 2703300 3688400 3181200 1617400 1563800 0 0 0 913480 427880 485600 9846 2850 10244 48834;48835;48836;48837 48707;48708;48709;48710 48707 4 FSEPLQVER CLLEESQNNTGLGSKFSEPLQVERCRRNLV TGLGSKFSEPLQVERCRRNLVALKADKFSG K F S E R C 0 1 0 0 0 1 2 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1103.5611 Q5K651 Q5K651 1323 1331 SAMD9 Sterile alpha motif domain-containing protein 9 yes yes 2 0.033361 47.603 By MS/MS 1 1.3817 1.2123 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3817 1.2123 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1758500 560380 1198100 0 0 0 0 0 0 0 0 0 1758500 560380 1198100 0 0 0 0 0 0 9847 3063 10245 48838 48711 48711 1 FSEQGGTPQNVATSSSLTAHLR TLRRVKSEEENVVLKFSEQGGTPQNVATSS PQNVATSSSLTAHLRSLSKGDSPVTSPFQN K F S L R S 2 1 1 0 0 2 1 2 1 0 2 0 0 1 1 4 3 0 0 1 0 0 22 0 2287.1193 Q9H1A4 Q9H1A4 285 306 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 3 2.7777E-40 192.25 By matching By MS/MS By MS/MS 1 2 1 0.79406 0.80273 12.277 4 Median NaN NaN NaN 0 0 Median 0.78193 0.65507 NaN 1 0 Median 0.79092 0.849 0.55399 2 0 Median 0.86526 0.76196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70103000 38132000 31970000 0 0 0 1702000 958610 743360 62938000 34421000 28517000 5462600 2752600 2710000 0 0 0 0 0 0 9848 3933 10246 48839;48840;48841;48842 48712;48713;48714;48715;48716;48717 48714 6 FSEVLKR AGVHIKLPNLGKHEKFSEVLKRLRLQKRGT PNLGKHEKFSEVLKRLRLQKRGTGGVDTAA K F S K R L 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 7 1 877.50215 P12277;H0YJG0;H0YJK0 P12277 308 314 CKB Creatine kinase B-type yes no 2 2.2423E-09 170.43 By MS/MS By MS/MS By MS/MS By matching 5 1 1 1 0.82468 0.85289 30.36 8 Median 0.78323 0.78188 25.922 5 1 Median 1.0641 1.0058 NaN 1 0 Median 0.90463 1.0272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5461 0.48078 NaN 1 0 Median 29690000 15225000 14465000 11968000 6464100 5503900 15962000 7907800 8054100 1363800 652350 711420 0 0 0 0 0 0 396560 201130 195430 9849 1980 10247 48843;48844;48845;48846;48847;48848;48849;48850 48718;48719;48720;48721;48722;48723;48724;48725 48725 8 FSFDLGK LDGTKFDSSLDRKDKFSFDLGKGEVIKAWD SSLDRKDKFSFDLGKGEVIKAWDIAIATMK K F S G K G 0 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 7 0 812.40685 Q02790;F5H1U3 Q02790 77 83 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.027519 51.787 By MS/MS By matching 1 1 1.1408 1.0369 22.386 2 Median 1.2649 1.2147 NaN 1 0 Median 1.0289 0.88506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4612100 2242700 2369400 2707000 1278600 1428300 1905100 964020 941130 0 0 0 0 0 0 0 0 0 0 0 0 9850 2701 10248 48851;48852 48726;48727 48727 2 FSFGLLDLPFR SKAIKFSVKEGKPEKFSFGLLDLPFRVGVP KPEKFSFGLLDLPFRVGVPFNIPLEFQDEF K F S F R V 0 1 0 1 0 0 0 1 0 0 3 0 0 3 1 1 0 0 0 0 0 0 11 0 1310.7023 A6NHR9;J3KTL8 A6NHR9 826 836 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0021689 54.982 By MS/MS By matching By MS/MS 1 1 2 0.96797 0.95948 10.71 4 Median 1.1295 1.1282 NaN 1 0 Median 1.0714 0.95333 NaN 1 0 Median 0.86102 0.91753 7.2336 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5468800 2887400 2581400 726950 344160 382790 132730 61091 71642 4609100 2482100 2127000 0 0 0 0 0 0 0 0 0 9851 518 10249 48853;48854;48855;48856 48728;48729 48729 2 FSFSPEPTLEDIRR IRGDTGGEDTAAPGRFSFSPEPTLEDIRRL RFSFSPEPTLEDIRRLHAEFAAERDWEQFH R F S R R L 0 2 0 1 0 0 2 0 0 1 1 0 0 2 2 2 1 0 0 0 0 0 14 1 1692.8471 Q9H773 Q9H773 23 36 DCTPP1 dCTP pyrophosphatase 1 yes yes 2 0.0033373 43.512 By MS/MS 1 0.93883 0.98405 NaN 1 Median 0.93883 0.98405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3344600 1961900 1382600 3344600 1961900 1382600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9852 3979 10250 48857 48730 48730 1 FSFTLPYPVK VSVIQSIPIFNETGRFSFTLPYPVKIKVRF NETGRFSFTLPYPVKIKVRFSFFLQIYLIM R F S V K I 0 0 0 0 0 0 0 0 0 0 1 1 0 2 2 1 1 0 1 1 0 0 10 0 1197.6434 Q9P035;H3BS72;H3BPZ1;H3BRL8 Q9P035 310 319 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.0010001 69.423 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.91562 0.89998 18.033 6 Median 0.86852 0.85059 4.1586 2 0 Median 0.91525 0.79834 NaN 1 0 Median 0.93225 1.0165 13.395 2 0 Median 1.3904 1.2587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31404000 17286000 14118000 19108000 10284000 8823900 4834500 3507700 1326900 7355000 3447700 3907300 105860 45783 60081 0 0 0 0 0 0 9853 4200 10251 48858;48859;48860;48861;48862;48863 48731;48732;48733;48734;48735 48733 5 FSFWDKDAR HPVHGTLATVGSDGRFSFWDKDARTKLKTS VGSDGRFSFWDKDARTKLKTSEQLDQPISA R F S A R T 1 1 0 2 0 0 0 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 9 1 1170.5458 P78406;E9PQ57 P78406 297 305 RAE1 mRNA export factor yes no 2 0.0021554 125.31 By MS/MS By MS/MS 1 1 1.213 1.2085 6.2453 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1058 1.263 NaN 1 0 Median 1.3306 1.1563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52797000 24038000 28759000 0 0 0 0 0 0 46576000 21393000 25183000 6220700 2645200 3575600 0 0 0 0 0 0 9854 2645 10252 48864;48865 48736;48737;48738 48736 3 FSGDLDDQTCR AEMKSLEEKIGCLLKFSGDLDDQTCREDLH CLLKFSGDLDDQTCREDLHILFSNHGEIKW K F S C R E 0 1 0 3 1 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1312.5354 P05455 P05455 236 246 SSB Lupus La protein yes yes 2 0.00011368 128.27 By MS/MS 1 1.3249 1.1213 NaN 1 Median NaN NaN NaN 0 0 Median 1.3249 1.1213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5707800 2477800 3230000 0 0 0 5707800 2477800 3230000 0 0 0 0 0 0 0 0 0 0 0 0 9855 1867 10253 48866 48739;48740 48739 2 FSGEELDKLWR PRLEKLWHKAKTSGKFSGEELDKLWREFLH TSGKFSGEELDKLWREFLHHKEKVHEYNVL K F S W R E 0 1 0 1 0 0 2 1 0 0 2 1 0 1 0 1 0 1 0 0 0 0 11 1 1378.6881 P30533;A0A3B3IRQ7 P30533 164 174 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2;3 0.00084147 93.111 By MS/MS By matching By MS/MS By matching 2 1 1 2 1.3212 1.3966 14.076 6 Median 1.3582 1.455 0.044653 2 0 Median 1.1912 1.1129 NaN 1 0 Median 1.2856 1.4583 NaN 1 0 Median 1.3569 1.2016 15.515 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11318000 4605300 6712400 8180100 3235900 4944300 223870 112410 111470 2402600 1043500 1359100 511110 213550 297560 0 0 0 0 0 0 9856 2196 10254 48867;48868;48869;48870;48871;48872 48741;48742;48743;48744 48741 4 FSGFSAKPNNSGEAPSSPTPK PVKGASFVTSTNPRKFSGFSAKPNNSGEAP KPNNSGEAPSSPTPKRSLSSSKCDPRHKDC K F S P K R 2 0 2 0 0 0 1 2 0 0 0 2 0 2 4 5 1 0 0 0 0 0 21 1 2106.0018 P49916;K7ERZ5;K7ENR9 P49916 226 246 LIG3 DNA ligase 3 yes no 3 0.002057 36.246 By MS/MS 1 0.56335 0.64439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56335 0.64439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3318900 2094900 1224000 0 0 0 0 0 0 3318900 2094900 1224000 0 0 0 0 0 0 0 0 0 9857 2406 10255 48873 48745 48745 1 FSGHVSWVGK IDMCKKSLSPEQDIKFSGHVSWVGKTSMEV EQDIKFSGHVSWVGKTSMEVKMQMFQLHGD K F S G K T 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 2 0 1 0 2 0 0 10 0 1102.556 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 167 176 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.00036108 119.75 By MS/MS By MS/MS By MS/MS 1 1 1 1.4 1.3611 19.009 3 Median 1.1427 1.0557 NaN 1 0 Median 1.8084 1.5314 NaN 1 0 Median 1.4 1.3611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43210000 18878000 24332000 18962000 9520800 9441000 15618000 5804600 9813400 8630500 3552700 5077700 0 0 0 0 0 0 0 0 0 9858 4400 10256 48874;48875;48876 48746;48747;48748;48749;48750;48751 48747 6 FSGKHVVFIAQR FQKIQVRLVRELEKKFSGKHVVFIAQRRIL EKKFSGKHVVFIAQRRILPKPTRKSRTKNK K F S Q R R 1 1 0 0 0 1 0 1 1 1 0 1 0 2 0 1 0 0 0 2 0 0 12 1 1387.7725 P62081;A0A2R8Y623;B5MCP9 P62081 87 98 RPS7 40S ribosomal protein S7 yes no 3 0.04108 50.149 By MS/MS By matching 1 2 1.878 1.795 29.383 3 Plateau 1.2673 1.3344 NaN 1 0 Median 1.4297 1.338 41.553 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8087600 3039900 5047700 2370800 1116900 1253800 5716900 1923000 3793900 0 0 0 0 0 0 0 0 0 0 0 0 9859 2568 10257 48877;48878;48879 48752 48752 0 FSGLPSNDEPILSFSPK ATKFNFFIHNLAQLRFSGLPSNDEPILSFS GLPSNDEPILSFSPKTYSFRQDGRIKEVSV R F S P K T 0 0 1 1 0 0 1 1 0 1 2 1 0 2 3 4 0 0 0 0 0 0 17 0 1833.9149 O00443 O00443 1398 1414 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.001662 36.982 By MS/MS By matching 1 1 0.73615 0.73681 6.5637 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63107 0.70339 NaN 1 0 Median 0.85873 0.77181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3402500 2167600 1234900 0 0 0 0 0 0 3155100 2006400 1148700 247430 161220 86210 0 0 0 0 0 0 9860 1465 10258 48880;48881 48753 48753 1 FSGVNEQPPVVLAVK EVVNSITGERLSAYRFSGVNEQPPVVLAVK FSGVNEQPPVVLAVKEFSWQKRTGLLIGLE R F S V K E 1 0 1 0 0 1 1 1 0 0 1 1 0 1 2 1 0 0 0 4 0 0 15 0 1582.8719 Q8WYP5 Q8WYP5 70 84 AHCTF1 Protein ELYS yes yes 2 0.0016263 38.804 By MS/MS 1 0.71114 0.79176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71114 0.79176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5903300 3379900 2523400 0 0 0 0 0 0 5903300 3379900 2523400 0 0 0 0 0 0 0 0 0 9861 3524 10259 48882 48754 48754 1 FSGWYDADLSPAGHEEAK VLIRHGESAWNLENRFSGWYDADLSPAGHE WYDADLSPAGHEEAKRGGQALRDAGYEFDI R F S A K R 3 0 0 2 0 0 2 2 1 0 1 1 0 1 1 2 0 1 1 0 0 0 18 0 1978.8697 P18669 P18669 22 39 PGAM1 Phosphoglycerate mutase 1 yes yes 2;3 9.3987E-14 120.6 By MS/MS By MS/MS By MS/MS 3 2 2 1.0189 0.85063 28.674 7 Median 0.92177 0.85063 40.514 3 0 Median 1.0283 0.86234 1.9391 2 0 Median 0.85996 0.8112 23.526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 248470000 121100000 127380000 216900000 105430000 111470000 19455000 9356400 10098000 12123000 6310500 5812500 0 0 0 0 0 0 0 0 0 9862 2060 10260 48883;48884;48885;48886;48887;48888;48889 48755;48756;48757;48758;48759;48760;48761;48762;48763;48764;48765;48766 48760 12 FSGWYDADLSPAGHEEAKR VLIRHGESAWNLENRFSGWYDADLSPAGHE YDADLSPAGHEEAKRGGQALRDAGYEFDIC R F S K R G 3 1 0 2 0 0 2 2 1 0 1 1 0 1 1 2 0 1 1 0 0 0 19 1 2134.9708 P18669 P18669 22 40 PGAM1 Phosphoglycerate mutase 1 yes yes 2;3;4 1.0219E-18 121.76 By MS/MS By MS/MS By matching 3 3 2 0.94705 0.96063 7.4038 8 Median 0.93885 0.97378 11.345 3 0 Median 1.046 0.96027 4.3227 3 0 Median 0.9233 0.95137 1.4217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 253250000 123910000 129340000 195940000 96453000 99489000 51563000 25064000 26499000 5746600 2393100 3353500 0 0 0 0 0 0 0 0 0 9863 2060 10261 48890;48891;48892;48893;48894;48895;48896;48897 48767;48768;48769;48770;48771;48772;48773;48774;48775;48776;48777;48778 48769 12 FSHDADPEVSYNSIFAMGMVGSGTNNAR SVSNPRLNILDTLSKFSHDADPEVSYNSIF IFAMGMVGSGTNNARLAAMLRQLAQYHAKD K F S A R L 3 1 3 2 0 0 1 3 1 1 0 0 2 2 1 4 1 0 1 2 0 0 28 0 2973.3022 Q13200;H7C1H2 Q13200 713 740 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 1.3837E-21 73.676 By MS/MS 2 0.89779 0.87847 2.6505 2 Median 0.89779 0.87847 2.6505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10683000 5047400 5635400 10683000 5047400 5635400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9864 2796 10262 48898;48899 48779;48780 48780 2 FSHEEIAMATVTALR LKPNMVTPGHACTQKFSHEEIAMATVTALR FSHEEIAMATVTALRRTVPPAVTGITFLSG K F S L R R 3 1 0 0 0 0 2 0 1 1 1 0 1 1 0 1 2 0 0 1 0 0 15 0 1674.8399 J3KPS3;P04075;H3BQN4;H3BR68;H3BU78 J3KPS3 248 262 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 2.9598E-10 151.98 By MS/MS By MS/MS By MS/MS By matching 6 3 3 1 1.1938 1.1749 23.828 13 Median 1.2309 1.2159 16.373 6 1 Median 1.1882 1.03 30.782 3 0 Plateau 1.2611 1.2447 8.7583 3 0 Median 1.1938 1.0602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 788100000 352510000 435590000 257440000 112010000 145420000 420900000 191130000 229770000 108610000 48813000 59802000 1152500 554530 597990 0 0 0 0 0 0 9865 1310 10263;10264 48900;48901;48902;48903;48904;48905;48906;48907;48908;48909;48910;48911;48912 48781;48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792;48793;48794;48795;48796;48797;48798;48799 48790 432 19 FSHEEIAMATVTALRR LKPNMVTPGHACTQKFSHEEIAMATVTALR SHEEIAMATVTALRRTVPPAVTGITFLSGG K F S R R T 3 2 0 0 0 0 2 0 1 1 1 0 1 1 0 1 2 0 0 1 0 0 16 1 1830.9411 J3KPS3;P04075;H3BQN4;H3BR68;H3BU78 J3KPS3 248 263 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3;4 2.3171E-11 122.93 By MS/MS By matching By matching 4 1 2 1.3806 1.4526 13.436 7 Median 1.3268 1.396 11.016 4 0 Median 1.2877 1.2026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.879 1.6541 2.4229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 189140000 80370000 108770000 178250000 75611000 102640000 9946700 4393400 5553300 0 0 0 942840 366370 576480 0 0 0 0 0 0 9866 1310 10265 48913;48914;48915;48916;48917;48918;48919 48800;48801;48802;48803;48804;48805;48806 48800 7 FSHGTMPLR FHYIKRLLETLFVHRFSHGTMPLRNIFKNC TLFVHRFSHGTMPLRNIFKNCTYYWGFAAW R F S L R N 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 1 0 0 0 0 0 9 0 1044.5175 Q9NZ01;M0R2N5 Q9NZ01 151 159 TECR Very-long-chain enoyl-CoA reductase yes no 2 0.00040782 132.08 By MS/MS By MS/MS 1 2 1.0078 0.84378 1.4161 3 Median 0.86225 0.86468 NaN 1 0 Median 1.0306 0.84373 0.0080618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23859000 11910000 11949000 4755500 2843900 1911600 19103000 9065600 10038000 0 0 0 0 0 0 0 0 0 0 0 0 9867 4181 10266 48920;48921;48922 48807;48808;48809;48810;48811;48812 48809 6 FSHITPSTQQHLK MNIFDRKINFDALLKFSHITPSTQQHLKKV LKFSHITPSTQQHLKKVYASFALCMFVA__ K F S L K K 0 0 0 0 0 2 0 0 2 1 1 1 0 1 1 2 2 0 0 0 0 0 13 0 1522.7892 F8VQW0;F8VX73;F8VPI1;F8W201;F8W086;F8VR05;F8VQQ5;F8VSI7;F8VVJ4;P55061 F8VQW0 16 28 TMBIM6 Bax inhibitor 1 yes no 3 0.029677 20.106 By MS/MS 2 0.66945 0.65563 21.449 2 Median 0.66945 0.65563 21.449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1715800 983160 732690 1715800 983160 732690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9868 1058 10267 48923;48924 48813 48813 1 FSHLTSLPQQLPSQQLMSK PRPSPARPKKSEESRFSHLTSLPQQLPSQQ TSLPQQLPSQQLMSKDQDEQEELDFLFDEE R F S S K D 0 0 0 0 0 4 0 0 1 0 4 1 1 1 2 4 1 0 0 0 0 0 19 0 2169.1252 Q6PKG0;A0A0B4J210;E5RH50;H0YC73 Q6PKG0 579 597 LARP1 La-related protein 1 yes no 3 5.1332E-11 97.32 By MS/MS By matching 1 1 0.84643 0.86485 5.7522 2 Median 0.86184 0.83037 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8313 0.90075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25742000 13640000 12102000 22074000 11811000 10263000 0 0 0 3668300 1828900 1839400 0 0 0 0 0 0 0 0 0 9869 3176 10268 48925;48926 48814;48815 48815 2 FSHQGVQLIDFSPCER GIALWGGEKFKQIQRFSHQGVQLIDFSPCE SHQGVQLIDFSPCERYLVTFSPLMDTQDDP R F S E R Y 0 1 0 1 1 2 1 1 1 1 1 0 0 2 1 2 0 0 0 1 0 0 16 0 1918.8996 P55884;C9JQN7 P55884 371 386 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 3 0.057753 9.9222 By MS/MS 1 1.7117 1.4711 NaN 1 Median NaN NaN NaN 0 0 Median 1.7117 1.4711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1797800 818400 979400 0 0 0 1797800 818400 979400 0 0 0 0 0 0 0 0 0 0 0 0 9870 2504 10269 48927 48816 48816 1 FSIEDLK KSEPESRLEKGVDVKFSIEDLKAQPKQTTC LEKGVDVKFSIEDLKAQPKQTTCWDGVRNY K F S L K A 0 0 0 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 850.44363 Q9P016 Q9P016 75 81 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.031276 49.358 By MS/MS By matching 1 1 1.0009 0.89604 8.7448 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89659 0.84231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1173 0.9532 NaN 1 0 Median 8169200 4139500 4029600 0 0 0 0 0 0 8071500 4104000 3967500 0 0 0 0 0 0 97635 35519 62116 9871 4198 10270 48928;48929 48817;48818 48817 2 FSISAHGK RQAMLENASDIKLEKFSISAHGKELFVNAD SDIKLEKFSISAHGKELFVNADLYIVAGRR K F S G K E 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 845.43955 Q8NE71;H0YGW7;Q5STZ8 Q8NE71 309 316 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.036811 37.558 By matching By MS/MS 1 2 1.1766 0.99266 14.205 3 Median NaN NaN NaN 0 0 Median 0.92239 0.80667 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1932 1.0251 4.5497 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4671800 2055800 2616000 0 0 0 2563800 1173200 1390600 0 0 0 2108000 882610 1225400 0 0 0 0 0 0 9872 3427 10271 48930;48931;48932 48819 48819 1 FSISPDEDSSSYSSNSDFNYSYPTK ______________________________ SYSSNSDFNYSYPTKQAALKSHYADVDPEN R F S T K Q 0 0 2 3 0 0 1 0 0 1 0 1 0 2 2 9 1 0 3 0 0 0 25 0 2823.1671 Q96QD8;F8VUY8 Q96QD8 9 33 SLC38A2 Sodium-coupled neutral amino acid transporter 2 yes no 3 0.013033 15.26 By MS/MS By matching 2 1 1.0077 0.98244 42.734 3 Plateau 0.94335 0.91188 15.498 2 0 Median 0.50007 0.4459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5025600 2561500 2464100 4686800 2365600 2321100 338870 195870 143010 0 0 0 0 0 0 0 0 0 0 0 0 9873 3719 10272 48933;48934;48935 48820 48820 1 FSISSDYQLR NSLQPRHIDELSLPRFSISSDYQLRDILSQ LSLPRFSISSDYQLRDILSQLGIKKIFTSD R F S L R D 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 3 0 0 1 0 0 0 10 0 1214.5932 CON__REFSEQ:XP_001252647 CON__REFSEQ:XP_001252647 312 321 yes yes 2 0.010842 57.96 By MS/MS 1 0.43721 0.43362 NaN 1 Median 0.43721 0.43362 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3133800 1916900 1217000 3133800 1916900 1217000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 9874 796 10273 48936 48821 48821 1 FSISSHYQLK SSLQPRLIHRLRLPRFSISSHYQLKDILSQ LRLPRFSISSHYQLKDILSQLGIKKIFTSD R F S L K D 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 3 0 0 1 0 0 0 10 0 1208.619 CON__A2I7N3 CON__A2I7N3 312 321 yes yes 2;3 0.00064283 93.551 By MS/MS By MS/MS 2 2 0.45313 0.40625 269.07 2 Median 2.9285 2.7233 NaN 1 1 Median 0.070112 0.060603 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43161000 19177000 23984000 39410000 15497000 23913000 3750700 3679700 70948 0 0 0 0 0 0 0 0 0 0 0 0 + 9875 733 10274 48937;48938;48939;48940 48822;48823;48824;48825 48823 4 FSIYPPIPGEESSLR AKQKVEQNAAPSHTKFSIYPPIPGEESSLR FSIYPPIPGEESSLRWAGKKFEEIPIAHIK K F S L R W 0 1 0 0 0 0 2 1 0 2 1 0 0 1 3 3 0 0 1 0 0 0 15 0 1690.8566 P82912;H0YL99 P82912 60 74 MRPS11 28S ribosomal protein S11, mitochondrial yes no 2 0.0022051 38.238 By MS/MS By MS/MS By matching 1 1 1 0.62493 0.61023 25.67 3 Median 0.62493 0.61023 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55563 0.52302 NaN 1 0 Median 1.0589 0.86335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10303000 6703400 3599500 8118800 5368500 2750300 0 0 0 1940700 1217200 723510 243410 117730 125680 0 0 0 0 0 0 9876 2655 10275 48941;48942;48943 48826;48827;48828 48826 3 FSKEEPVSSGPEEAVGK PEEAGHRSGSKKKRKFSKEEPVSSGPEEAV KEEPVSSGPEEAVGKSSSKKKKKFHKASQE K F S G K S 1 0 0 0 0 0 4 2 0 0 0 2 0 1 2 3 0 0 0 2 0 0 17 1 1775.8578 O00567 O00567 562 578 NOP56 Nucleolar protein 56 yes yes 3 6.9941E-06 66.809 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.6807 0.75863 17.795 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6807 0.75863 NaN 1 0 Median 1.0776 0.99499 NaN 1 1 Median 0.59385 0.64941 6.4105 2 0 Median 0.87406 0.779 NaN 1 0 Median 29833000 18065000 11768000 0 0 0 0 0 0 11284000 6522900 4761400 883590 436560 447030 15639000 10076000 5563100 2026500 1030000 996520 9877 1472 10276 48944;48945;48946;48947;48948 48829;48830;48831;48832;48833;48834;48835;48836 48830 8 FSKEQLPIFK VLASCPKKPVSSYLRFSKEQLPIFKAQNPD SSYLRFSKEQLPIFKAQNPDAKTTELIRRI R F S F K A 0 0 0 0 0 1 1 0 0 1 1 2 0 2 1 1 0 0 0 0 0 0 10 1 1235.6914 Q00059;H7BYN3 Q00059 60 69 TFAM Transcription factor A, mitochondrial yes no 3 0.00092185 58.699 By matching By MS/MS 1 1 0.9571 0.99288 1.7446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.003 1.0052 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91333 0.9807 NaN 1 0 Median NaN NaN NaN 0 0 Median 23292000 10894000 12399000 0 0 0 0 0 0 3106000 1373000 1733000 0 0 0 20186000 9520600 10666000 0 0 0 9878 2673 10277 48949;48950 48837;48838;48839 48838 3 FSLAAFLR YFIISDLSKINNMYRFSLAAFLRLFQRALQ KINNMYRFSLAAFLRLFQRALQNKQDSENT R F S L R L 2 1 0 0 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 923.52289 Q8NCM8 Q8NCM8 3518 3525 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.016506 49.358 By MS/MS By matching 2 1 0.97825 0.98783 17.594 3 Median 0.86927 0.86664 18.51 2 0 Median 1.2251 1.0624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2681500 1331300 1350200 2059500 1048700 1010800 622030 282620 339400 0 0 0 0 0 0 0 0 0 0 0 0 9879 3418 10278 48951;48952;48953 48840;48841 48841 2 FSLAEMHFQK NAWYGLGMIYYKQEKFSLAEMHFQKALDIN YKQEKFSLAEMHFQKALDINPQSSVLLCHI K F S Q K A 1 0 0 0 0 1 1 0 1 0 1 1 1 2 0 1 0 0 0 0 0 0 10 0 1236.5961 G5EA36;I3L394 G5EA36 650 659 CDC27 no no 2;3 0.010762 49.418 By MS/MS 4 0.97258 1.0268 8.4401 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97258 1.0268 8.4401 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20942000 10013000 10928000 0 0 0 0 0 0 20942000 10013000 10928000 0 0 0 0 0 0 0 0 0 9880 1135 10279 48954;48955;48956;48957 48842;48843;48844 48842 3 FSLDFNLR GEKPFQCTFEGCGKRFSLDFNLRTHVRIHT FEGCGKRFSLDFNLRTHVRIHTGDRPYVCP R F S L R T 0 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1010.5185 P25490;H0YJV7;Q96MM3;O15391 P25490 364 371 YY1;ZFP42;YY2 Transcriptional repressor protein YY1;Zinc finger protein 42 homolog;Transcription factor YY2 no no 2 0.039331 37.021 By MS/MS By matching By matching By matching 3 2 1 1 1.1274 1.1 19.727 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1394 1.1836 4.7577 3 0 Median 1.0901 0.94624 1.7176 2 0 Median 0.68035 0.68508 NaN 1 0 Median 1.4371 1.1223 NaN 1 0 Median 7960600 3821900 4138700 0 0 0 0 0 0 5255200 2531700 2723500 2132900 981090 1151800 343070 204550 138520 229450 104600 124850 9881 2133;1544 10280 48958;48959;48960;48961;48962;48963;48964 48845;48846 48845 2 FSLENNFLLQHNIR RFHDLLSQLDDQYSRFSLENNFLLQHNIRK RFSLENNFLLQHNIRKSKRNLQDNFQEDPI R F S I R K 0 1 3 0 0 1 1 0 1 1 3 0 0 2 0 1 0 0 0 0 0 0 14 0 1743.9057 P42224;J3KPM9;E7EPD2;D2KFR9;E7ENM1 P42224 71 84 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2;3 0.00020085 62.258 By MS/MS By MS/MS By matching 2 2 1 1.1476 1.0233 10.055 5 Median 1.1162 1.0752 6.9918 2 0 Median 1.2154 1.0756 14.986 2 0 Median NaN NaN NaN 0 0 Median 1.1476 0.94625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12424000 6103300 6321100 8618200 4241300 4376900 3686800 1810000 1876800 0 0 0 119460 51987 67476 0 0 0 0 0 0 9882 2308 10281 48965;48966;48967;48968;48969 48847;48848;48849;48850 48847 4 FSLFAGGMLR TPGEHQICLHSNSTKFSLFAGGMLRVHLDI SNSTKFSLFAGGMLRVHLDIQVGEHANDYA K F S L R V 1 1 0 0 0 0 0 2 0 0 2 0 1 2 0 1 0 0 0 0 0 0 10 0 1097.5692 Q9BVK6 Q9BVK6 129 138 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 0.0067054 54.549 By MS/MS By matching 2 1 1.2291 1.164 3.8898 3 Median 1.2194 1.1557 1.0121 2 0 Median 1.448 1.2348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21252000 9816000 11436000 20367000 9421100 10946000 885050 394840 490210 0 0 0 0 0 0 0 0 0 0 0 0 9883 3856 10282;10283 48970;48971;48972 48851;48852;48853;48854 48851 1841 4 FSLFSAAVR LRTAYLRAEDSEREKFSLFSAAVRESHEKE DSEREKFSLFSAAVRESHEKERTRAERTKN K F S V R E 2 1 0 0 0 0 0 0 0 0 1 0 0 2 0 2 0 0 0 1 0 0 9 0 996.53927 Q96ER9 Q96ER9 179 187 CCDC51 Coiled-coil domain-containing protein 51 yes yes 2 0.01772 41.448 By MS/MS By matching 1 1 1.2939 1.2183 17.458 2 Median 1.0751 1.0768 NaN 1 0 Median 1.5571 1.3784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3150400 1478900 1671500 2643500 1281200 1362300 506860 197670 309190 0 0 0 0 0 0 0 0 0 0 0 0 9884 3640 10284 48973;48974 48855;48856 48856 2 FSLIDLAGNER VFQIILRRKGKLHGKFSLIDLAGNERGADT LHGKFSLIDLAGNERGADTSSADRQTRLEG K F S E R G 1 1 1 1 0 0 1 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1233.6354 O00139 O00139 453 463 KIF2A Kinesin-like protein KIF2A yes yes 2 0.00015337 99.802 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 2 3 2 1 1.1634 1.0554 18.774 12 Median 1.1154 1.0604 7.4992 3 0 Plateau 1.1431 0.99058 NaN 1 0 Median 1.3059 1.384 13.63 2 0 Median 1.1883 1.0233 9.4018 3 0 Median 1.3286 1.3731 7.3355 2 0 Median 0.95427 0.81373 NaN 1 0 Median 28846000 12884000 15962000 8571200 3991300 4579900 3017100 1366900 1650200 13151000 5607600 7543000 1888700 794480 1094200 1043900 475200 568710 1174900 648700 526150 9885 1440 10285 48975;48976;48977;48978;48979;48980;48981;48982;48983;48984;48985;48986 48857;48858;48859;48860;48861;48862 48858 6 FSLSGGYWNSVSDTAK DDTPEEILARIGSGKFSLSGGYWNSVSDTA SLSGGYWNSVSDTAKDLVSKMLHVDPHQRL K F S A K D 1 0 1 1 0 0 0 2 0 0 1 1 0 1 0 4 1 1 1 1 0 0 16 0 1717.7948 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 609 624 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 7.9007E-05 75.479 By MS/MS 1 0.93563 0.86135 NaN 1 Median 0.93563 0.86135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7087700 3468800 3618900 7087700 3468800 3618900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9886 581 10286 48987 48863 48863 1 FSLVDLAGNER CFQIILRAKGRMHGKFSLVDLAGNERGADT MHGKFSLVDLAGNERGADTSSADRQTRMEG K F S E R G 1 1 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1219.6197 Q99661;Q8N4N8 Q99661 488 498 KIF2C;KIF2B Kinesin-like protein KIF2C;Kinesin-like protein KIF2B yes no 2 0.0003569 71.349 By matching By matching By MS/MS By matching 1 1 3 3 1.1524 1.0517 17.462 8 Median 1.4578 1.4769 NaN 1 0 Median 1.144 1.0258 NaN 1 0 Median 1.2096 1.2715 10.333 3 0 Median 1.1174 0.93627 2.4096 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16863000 7452100 9411000 913870 354670 559200 247710 111730 135980 12977000 5695700 7281600 2724300 1290000 1434300 0 0 0 0 0 0 9887 3761 10287 48988;48989;48990;48991;48992;48993;48994;48995 48864;48865;48866 48865 3 FSLVPHNYGLVLYENK NLFQHQEDSKKWRNRFSLVPHNYGLVLYEN SLVPHNYGLVLYENKAAYERQVPPRAVINS R F S N K A 0 0 2 0 0 0 1 1 1 0 3 1 0 1 1 1 0 0 2 2 0 0 16 0 1891.9832 Q96TA1 Q96TA1 89 104 FAM129B Niban-like protein 1 yes yes 3 0.068986 16.399 By MS/MS 1 1.0337 1.1367 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0337 1.1367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3639000 1757200 1881800 0 0 0 0 0 0 3639000 1757200 1881800 0 0 0 0 0 0 0 0 0 9888 3743 10288 48996 48867 48867 1 FSLYQTR TDTSHLLSAVKGQERFSLYQTRSLIHELKN SAVKGQERFSLYQTRSLIHELKNKEIHFQR R F S T R S 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 7 0 913.46577 Q8WXH0;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5732 5738 SYNE2 Nesprin-2 yes no 2 0.034356 47.849 By matching By matching By MS/MS 1 1 1 1.6146 1.3537 22.85 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97302 1.0521 NaN 1 0 Median 1.9107 1.6603 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6146 1.3537 NaN 1 0 Median 5632300 2454200 3178100 0 0 0 0 0 0 4313400 1946600 2366800 569010 237100 331910 0 0 0 749900 270460 479440 9889 3521 10289 48997;48998;48999 48868;48869 48869 2 FSMGSVVAGLLK GDGFKVAMNILNSGRFSMGSVVAGLLKRLI SGRFSMGSVVAGLLKRLIEMTAEYACTRKQ R F S L K R 1 0 0 0 0 0 0 2 0 0 2 1 1 1 0 2 0 0 0 2 0 0 12 0 1207.6635 Q9H845;H0Y8Z9 Q9H845 305 316 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.030367 28.209 By MS/MS By matching 1 3 1.5646 1.3387 13.324 4 Median 1.0853 1.0429 NaN 1 0 Median 1.572 1.3598 2.7372 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14444000 5960700 8482900 3644100 1696500 1947600 10799000 4264200 6535300 0 0 0 0 0 0 0 0 0 0 0 0 9890 3988 10290 49000;49001;49002;49003 48870 48870 1 FSMNPFYEPNSPIR GIKNFFTDVYDLYIKFSMNPFYEPNSPIRS KFSMNPFYEPNSPIRSSAFDRKVQFLGKKH K F S I R S 0 1 2 0 0 0 1 0 0 1 0 0 1 2 3 2 0 0 1 0 0 0 14 0 1697.7872 P0DI82;P0DI81 P0DI82 109 122 TRAPPC2B;TRAPPC2 Trafficking protein particle complex subunit 2B;Trafficking protein particle complex subunit 2 yes no 2 0.0021246 44.765 By MS/MS By matching 1 1 1.4509 1.2644 97.705 2 Median 0.6479 0.63363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.2492 2.523 NaN 1 0 Median 1875400 947220 928190 1750000 898630 851340 0 0 0 0 0 0 0 0 0 0 0 0 125440 48590 76849 9891 1928 10291 49004;49005 48871 48871 1 FSMPGFK GPDWHLKMPKMKMPKFSMPGFKAEGPEVDV MPKMKMPKFSMPGFKAEGPEVDVNLPKADV K F S F K A 0 0 0 0 0 0 0 1 0 0 0 1 1 2 1 1 0 0 0 0 0 0 7 0 812.3891 Q09666 Q09666 885 891 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.003648 103.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 10 2 3 1.04 1.0331 12.825 28 Median 0.97561 0.95263 7.5336 4 0 Median 1.2615 1.1253 9.7713 5 0 Median 1.0465 1.1154 4.4628 4 1 Median 1.1133 1.0358 10.666 10 1 Median 0.92671 0.97595 17.562 2 0 Median 0.93721 0.80303 2.2672 3 0 Median 381330000 182790000 198540000 73073000 36660000 36413000 44459000 19597000 24862000 133780000 64785000 68999000 110490000 52097000 58395000 9848400 4757400 5091100 9673400 4888900 4784500 9892 2749 10292;10293 49006;49007;49008;49009;49010;49011;49012;49013;49014;49015;49016;49017;49018;49019;49020;49021;49022;49023;49024;49025;49026;49027;49028;49029;49030;49031;49032;49033 48872;48873;48874;48875;48876;48877;48878;48879;48880;48881;48882;48883;48884;48885;48886;48887;48888;48889;48890;48891;48892;48893;48894;48895;48896;48897;48898;48899;48900;48901;48902;48903;48904;48905;48906;48907 48893 1435 36 FSMPGFKAEGPEVDVNLPK GPDWHLKMPKMKMPKFSMPGFKAEGPEVDV GFKAEGPEVDVNLPKADVDISGPKVGVEVP K F S P K A 1 0 1 1 0 0 2 2 0 0 1 2 1 2 3 1 0 0 0 2 0 0 19 1 2061.0241 Q09666 Q09666 885 903 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 9.8627E-09 87.447 By MS/MS By MS/MS 4 1 0.65597 0.71409 16.387 5 Median 0.62403 0.67946 12.79 4 1 Median NaN NaN NaN 0 0 Median 0.77182 0.87406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113610000 64840000 48768000 94577000 54026000 40551000 0 0 0 19031000 10814000 8217200 0 0 0 0 0 0 0 0 0 9893 2749 10294;10295 49034;49035;49036;49037;49038 48908;48909;48910;48911;48912;48913;48914 48911 1435 7 FSMPGFKGEGPDGDVK GPDWHLKMPKVKMPKFSMPGFKGEGPDGDV SMPGFKGEGPDGDVKLPKADIDVSGPKVDI K F S V K L 0 0 0 2 0 0 1 4 0 0 0 2 1 2 2 1 0 0 0 1 0 0 16 1 1666.7661 Q09666 Q09666 2646 2661 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 4.3889E-05 58.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.87782 0.94204 12.821 4 Median 0.68207 0.74315 NaN 1 0 Median 1.0362 0.98673 NaN 1 0 Median 0.8281 0.93874 NaN 1 0 Median 0.93051 0.94535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26984000 14453000 12531000 10074000 5943900 4129700 4256300 1936300 2320000 11501000 6023300 5477700 1152700 549220 603490 0 0 0 0 0 0 9894 2749 10296 49039;49040;49041;49042 48915;48916;48917;48918;48919 48917 5 FSMPGFKGEGPDGDVKLPK GPDWHLKMPKVKMPKFSMPGFKGEGPDGDV GFKGEGPDGDVKLPKADIDVSGPKVDIEGP K F S P K A 0 0 0 2 0 0 1 4 0 0 1 3 1 2 3 1 0 0 0 1 0 0 19 2 2004.9979 Q09666 Q09666 2646 2664 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 4 0.059305 18.058 By MS/MS 1 1.5756 1.8611 NaN 1 Median 1.5756 1.8611 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27122000 8715100 18407000 27122000 8715100 18407000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9895 2749 10297 49043 48920 48920 1 FSMPGFKGEGPDVDVNLPK GPDWHLKMPKVKMPKFSMPGFKGEGPDVDV GFKGEGPDVDVNLPKADLDVSGPKVDIDVP K F S P K A 0 0 1 2 0 0 1 3 0 0 1 2 1 2 3 1 0 0 0 2 0 0 19 1 2032.9928 Q09666 Q09666 3030 3048 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 3.6093E-08 72.819 By MS/MS By MS/MS By MS/MS By matching 4 2 3 3 0.93667 0.97769 17.524 12 Median 0.84612 0.88374 11.029 4 0 Median 1.0047 0.9583 42.077 2 0 Median 0.88223 0.99729 17.402 3 1 Median 1.0409 0.98166 3.0166 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 281810000 152030000 129780000 195080000 105660000 89421000 19290000 9683600 9606100 63791000 34738000 29052000 3644400 1941500 1702900 0 0 0 0 0 0 9896 2749 10298;10299 49044;49045;49046;49047;49048;49049;49050;49051;49052;49053;49054;49055 48921;48922;48923;48924;48925;48926;48927;48928;48929;48930;48931;48932;48933 48926 1436 13 FSMPGFKGEGPDVDVSLPK GPDWHLKMPKVKMPKFSMPGFKGEGPDVDV GFKGEGPDVDVSLPKADIDVSGPKVDVDIP K F S P K A 0 0 0 2 0 0 1 3 0 0 1 2 1 2 3 2 0 0 0 2 0 0 19 1 2005.9819 Q09666 Q09666 4788 4806 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 2.571E-05 45.608 By MS/MS 2 1.0341 1.0836 4.5953 2 Median 1.0341 1.0836 4.5953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16542000 7867400 8674300 16542000 7867400 8674300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9897 2749 10300 49056;49057 48934;48935 48935 2 FSMPGFKGEGPEVDMNLPK GPDWHLKMPKVKMPKFSMPGFKGEGPEVDM GFKGEGPEVDMNLPKADLGVSGPKVDIDVP K F S P K A 0 0 1 1 0 0 2 3 0 0 1 2 2 2 3 1 0 0 0 1 0 0 19 1 2078.9805 Q09666 Q09666 1518 1536 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 1.8573E-05 47.397 By MS/MS 1 0.72544 0.82198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72544 0.82198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14528000 8237600 6290300 0 0 0 0 0 0 14528000 8237600 6290300 0 0 0 0 0 0 0 0 0 9898 2749 10301 49058 48936 48936 1437 1 FSMPGFKGEGPEVDVK GPDWHLKMPKVKMPKFSMPGFKGEGPEVDV SMPGFKGEGPEVDVKLPKADVDVSGPKMDA K F S V K L 0 0 0 1 0 0 2 3 0 0 0 2 1 2 2 1 0 0 0 2 0 0 16 1 1722.8287 Q09666 Q09666 1390 1405 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00030359 77.593 By MS/MS By matching By matching By matching 2 3 2 1 0.93485 1.0179 21.842 8 Median 0.93485 1.0179 1.1452 2 0 Median NaN NaN NaN 0 0 Median 0.81053 0.91843 31.278 3 0 Median 1.1661 1.1321 6.1571 2 0 Median 0.69802 0.72806 NaN 1 0 Median NaN NaN NaN 0 0 Median 62104000 32591000 29514000 41562000 22299000 19263000 0 0 0 19569000 9780600 9788000 312450 156580 155870 660940 354020 306920 0 0 0 9899 2749 10302 49059;49060;49061;49062;49063;49064;49065;49066 48937;48938;48939 48939 3 FSMPGFKGEGPEVDVNLPK GPDWHLKMPKMKMPKFSMPGFKGEGPEVDV GFKGEGPEVDVNLPKADVDVSGPKVDVEVP K F S P K A 0 0 1 1 0 0 2 3 0 0 1 2 1 2 3 1 0 0 0 2 0 0 19 1 2047.0085 Q09666 Q09666 2251 2269 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 3.8061E-05 54.288 By MS/MS By matching 2 1 0.69662 0.75771 3.4353 3 Median 0.70174 0.76364 1.1026 2 1 Median NaN NaN NaN 0 0 Median 0.65249 0.72065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87540000 52354000 35186000 85440000 50961000 34479000 0 0 0 2100200 1393200 707020 0 0 0 0 0 0 0 0 0 9900 2749 10303;10304 49067;49068;49069 48940;48941 48940 1438 2 FSMPGFKGEGPEVDVTLPK GPDWHLKMPKVKMPKFSMPGFKGEGPEVDV GFKGEGPEVDVTLPKADIDISGPNVDVDVP K F S P K A 0 0 0 1 0 0 2 3 0 0 1 2 1 2 3 1 1 0 0 2 0 0 19 1 2034.0132 Q09666 Q09666 3610 3628 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0249 15.254 By MS/MS By MS/MS 2 1 0.55497 0.59407 29.384 3 Median 0.45914 0.46656 36.575 2 0 Median 0.62512 0.59407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24793000 17104000 7688700 23120000 16063000 7057400 1672400 1041100 631340 0 0 0 0 0 0 0 0 0 0 0 0 9901 2749 10305 49070;49071;49072 48942;48943;48944 48943 3 FSMPGFKGEGR GPDWHLKMPKMKMPKFSMPGFKGEGREVDV KMPKFSMPGFKGEGREVDVNLPKADIDVSG K F S G R E 0 1 0 0 0 0 1 3 0 0 0 1 1 2 1 1 0 0 0 0 0 0 11 1 1211.5757 Q09666 Q09666 1262 1272 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 6.0756E-05 76.332 By MS/MS By MS/MS 1 2 1.1374 1.3195 14.024 3 Median 1.0392 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1804 1.368 5.1044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33209000 15014000 18195000 13806000 6160700 7645000 0 0 0 19403000 8853400 10550000 0 0 0 0 0 0 0 0 0 9902 2749 10306 49073;49074;49075 48945;48946;48947;48948;48949;48950 48945 6 FSMPSLK GPDWNLKMPKIKMPKFSMPSLKGEGPEFDV MPKIKMPKFSMPSLKGEGPEFDVNLSKANV K F S L K G 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 2 0 0 0 0 0 0 7 0 808.41531 Q09666 Q09666 1006 1012 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.013611 76.035 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.1247 1.0337 7.5832 5 Median 1.0191 1.012 NaN 1 0 Median 1.1559 1.0081 NaN 1 0 Median 1.1247 1.2096 NaN 1 0 Median 1.1085 1.0381 0.60027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17476000 8309000 9166900 4303900 2001600 2302200 4491900 2356100 2135900 5360100 2394500 2965600 3320000 1556800 1763300 0 0 0 0 0 0 9903 2749 10307 49076;49077;49078;49079;49080 48951;48952;48953;48954;48955 48951 5 FSMPSLKGEGPEFDVNLSK GPDWNLKMPKIKMPKFSMPSLKGEGPEFDV SLKGEGPEFDVNLSKANVDISAPKVDTNAP K F S S K A 0 0 1 1 0 0 2 2 0 0 2 2 1 2 2 3 0 0 0 1 0 0 19 1 2081.0139 Q09666 Q09666 1006 1024 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0026633 32.565 By MS/MS By matching 2 1 1.3143 1.4314 58.108 3 Median 2.2704 2.3231 68.487 2 1 Median NaN NaN NaN 0 0 Median 1.1618 1.332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30520000 10104000 20416000 29382000 9500400 19882000 0 0 0 1137600 603370 534250 0 0 0 0 0 0 0 0 0 9904 2749 10308 49081;49082;49083 48956;48957;48958 48957 3 FSMVVQDGIVK DDSLVSIFGNRRLKRFSMVVQDGIVKALNV RLKRFSMVVQDGIVKALNVEPDGTGLTCSL R F S V K A 0 0 0 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 0 3 0 0 11 0 1221.6427 P30044 P30044 181 191 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 0.00013548 89.08 By MS/MS By MS/MS By MS/MS By matching 3 5 1 1 1.344 1.1377 31.949 10 Median 0.96787 0.91151 32.594 3 0 Median 1.4309 1.1953 10.951 5 0 Median 0.98601 0.93767 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4078 2.5167 NaN 1 0 Median NaN NaN NaN 0 0 Median 249030000 124500000 124530000 181670000 94452000 87215000 39407000 15515000 23892000 26656000 13989000 12667000 0 0 0 1297300 539870 757410 0 0 0 9905 2181 10309;10310 49084;49085;49086;49087;49088;49089;49090;49091;49092;49093 48959;48960;48961;48962;48963;48964;48965;48966;48967;48968 48962 924 9 FSNAEPEPR ______________________________ ATDLERFSNAEPEPRSLSLGGHVGFDSLPD R F S P R S 1 1 1 0 0 0 2 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 9 0 1045.4829 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 9 17 SEPT8 Septin-8 yes no 2 0.0035686 64.207 By MS/MS 2 0.57707 0.58593 12.187 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57707 0.58593 12.187 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3426800 2015600 1411200 0 0 0 0 0 0 3426800 2015600 1411200 0 0 0 0 0 0 0 0 0 9906 118 10311 49094;49095 48969;48970 48969 2 FSNISAAK GKGAYQDRDKPAQIRFSNISAAKAVADAIR DKPAQIRFSNISAAKAVADAIRTSLGPKGM R F S A K A 2 0 1 0 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 836.43922 P50991 P50991 35 42 CCT4 T-complex protein 1 subunit delta yes yes 2 0.004322 82.241 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.1477 0.972 13.106 5 Median 0.97043 0.91449 NaN 1 0 Median 1.1477 0.972 NaN 1 0 Median 1.2404 1.2585 NaN 1 0 Median 1.1479 1.0005 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.097 0.91861 NaN 1 0 Median 28987000 13343000 15644000 10112000 4859200 5252900 15327000 7064700 8262200 1165100 485480 679640 576870 263580 313280 0 0 0 1805900 669860 1136000 9907 2424 10312 49096;49097;49098;49099;49100 48971 48971 1 FSNLLGTVYR ______________________________ KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS R F S Y R R 0 1 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 10 0 1168.6241 Q15269;A0A0B4J2E5;C9J544 Q15269 7 16 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00033827 85.676 By MS/MS By matching By MS/MS 3 2 2 1.192 1.1939 34.968 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.192 1.2509 45.667 3 0 Median 1.0776 0.93433 34.672 2 0 Median 1.293 1.3051 27.436 2 0 Median NaN NaN NaN 0 0 Median 37028000 16624000 20404000 0 0 0 0 0 0 31283000 14176000 17107000 1764200 662560 1101600 3980600 1785100 2195500 0 0 0 9908 223 10313 49101;49102;49103;49104;49105;49106;49107 48972;48973;48974;48975;48976 48974 5 FSNNIISTFQNLYR SRHQFGQEKDVFAPRFSNNIISTFQNLYRC RFSNNIISTFQNLYRCPGDDKSKIVRVLNL R F S Y R C 0 1 3 0 0 1 0 0 0 2 1 0 0 2 0 2 1 0 1 0 0 0 14 0 1715.8631 A0A0A0MT33;Q9UPN6 A0A0A0MT33 166 179 SCAF8 Protein SCAF8 yes no 2 0.013211 32.008 By matching By MS/MS 1 1 0.86469 0.90751 11.238 2 Median 0.83514 0.83818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89529 0.98256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4717000 2604500 2112500 1864200 1037300 826920 0 0 0 2852800 1567200 1285600 0 0 0 0 0 0 0 0 0 9909 186 10314 49108;49109 48977 48977 1 FSNQETCVEIGESVR ADRLGLELGKVVTKKFSNQETCVEIGESVR FSNQETCVEIGESVRGEDVYIVQSGCGEIN K F S V R G 0 1 1 0 1 1 3 1 0 1 0 0 0 1 0 2 1 0 0 2 0 0 15 0 1753.7941 B1ALA9;P60891;A0A2R8Y7H4;B1ALA7 B1ALA9 35 49 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.00073906 46.592 By MS/MS 1 1.221 1.0286 NaN 1 Median NaN NaN NaN 0 0 Median 1.221 1.0286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1939400 912620 1026800 0 0 0 1939400 912620 1026800 0 0 0 0 0 0 0 0 0 0 0 0 9910 571 10315 49110 48978;48979 48979 2 FSNQETSVEIGESVR ADRLGLELGKVVTKKFSNQETSVEIGESVR FSNQETSVEIGESVRGEDVYIIQSGCGEIN K F S V R G 0 1 1 0 0 1 3 1 0 1 0 0 0 1 0 3 1 0 0 2 0 0 15 0 1680.7955 P11908;A6NMS2;D3YTJ7 P11908 35 49 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 2 0.00032688 66.262 By matching By MS/MS 1 1 1.1169 0.99359 8.7312 2 Median 1.1139 1.0569 NaN 1 0 Median 1.1199 0.9341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9268000 3820400 5447600 4677700 1929200 2748500 4590300 1891200 2699100 0 0 0 0 0 0 0 0 0 0 0 0 9911 1972 10316 49111;49112 48980;48981 48981 2 FSNSIPQSQTGNSETATPTNVDLPQVIPK HTHNMDGFFIAKFKKFSNSIPQSQTGNSET TATPTNVDLPQVIPKSENSSQPAKKAKGAA K F S P K S 1 0 3 1 0 3 1 1 0 2 1 1 0 1 4 4 4 0 0 2 0 0 29 0 3069.5255 P46087 P46087 587 615 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 0.0022125 29.54 By MS/MS By MS/MS By matching 1 2 1 0.53618 0.57434 10.666 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50147 0.55126 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53618 0.55823 9.8249 2 1 Median 0.76629 0.66571 NaN 1 0 Median 13375000 9460500 3914200 0 0 0 0 0 0 3574900 2422300 1152600 0 0 0 9671900 6980600 2691200 127930 57612 70318 9912 2338 10317 49113;49114;49115;49116 48982;48983 48983 2 FSNSSSSNEFSK QSCSNGQHEYGSCGRFSNSSSSNEFSKCDQ CGRFSNSSSSNEFSKCDQYGSGSSQSTSFE R F S S K C 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 6 0 0 0 0 0 0 12 0 1319.563 CON__Q5D862;Q5D862 CON__Q5D862 404 415 FLG2 Filaggrin-2 yes no 2 0.0053966 59.542 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 558850 558850 0 0 0 0 0 0 0 0 0 0 558850 558850 0 0 0 0 0 0 0 + 9913 785 10318 49117 48984 48984 1 FSPAGPILSIR GDLHPDVTEAMLYEKFSPAGPILSIRVCRD LYEKFSPAGPILSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 11 0 1156.6604 P11940;E7ERJ7;A0A087WTT1;Q9H361;H0YBN4;Q4VXU2;E5RJB9;E5RH24;E5RHG7;E5RGC4;E5RFD8 P11940 31 41 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.00017831 111.46 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 1 1 3 2 3 0.84956 0.74917 16.892 13 Median 0.79227 0.74917 11.383 3 0 Median 0.85061 0.73504 NaN 1 0 Median 0.86032 0.87154 NaN 1 0 Median 0.91221 0.76126 18.174 3 0 Median 0.93269 0.96249 13.969 2 0 Median 0.84956 0.66967 8.933 3 0 Median 108140000 58033000 50110000 46163000 25413000 20750000 21404000 11180000 10224000 19105000 10195000 8909600 2799600 1458600 1341000 12772000 6576000 6195500 5899800 3210100 2689800 9914 1973 10319 49118;49119;49120;49121;49122;49123;49124;49125;49126;49127;49128;49129;49130 48985;48986;48987;48988;48989;48990;48991;48992;48993;48994;48995;48996;48997;48998;48999;49000;49001 48986 17 FSPAGPVLSIR GDLHSDVTEAMLYEKFSPAGPVLSIRVCRD LYEKFSPAGPVLSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 0 11 0 1142.6448 B1ANR0;Q13310;B1ANR1 B1ANR0 31 41 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 yes no 2 0.00013559 86.898 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 1 2 3 1 1.0238 0.86236 33.809 15 Median 0.82538 0.81291 3.1452 4 0 Median 1.0582 0.93107 15.226 4 0 Median 1.0238 1.0424 NaN 1 0 Median 1.2772 1.0948 55.936 2 0 Median 2.0547 1.8449 29.197 3 0 Plateau 1.0319 0.84263 NaN 1 0 Median 76220000 38212000 38008000 48233000 25074000 23160000 10374000 5274200 5100000 11536000 5687100 5849400 1064000 499730 564240 4126600 1355200 2771400 885370 322710 562660 9915 576 10320 49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145 49002;49003;49004;49005;49006;49007;49008;49009;49010 49002 9 FSPDGELYASGSEDGTLR LESYKGHFGPIHCVRFSPDGELYASGSEDG DGELYASGSEDGTLRLWQTVVGKTYGLWKC R F S L R L 1 1 0 2 0 0 2 3 0 0 2 0 0 1 1 3 1 0 1 0 0 0 18 0 1899.8487 Q9Y3F4;H0YH33 Q9Y3F4 273 290 STRAP Serine-threonine kinase receptor-associated protein yes no 2 9.4621E-09 97.551 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 0.99727 0.97797 10.426 5 Median 0.98176 0.97797 NaN 1 0 Median 0.96499 0.82642 NaN 1 0 Median 0.99737 1.0378 6.9876 2 0 Median 1.0274 0.90141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40052000 19148000 20904000 10471000 4951500 5519600 1279600 645860 633740 26400000 12639000 13761000 1901400 911940 989460 0 0 0 0 0 0 9916 4429 10321 49146;49147;49148;49149;49150 49011;49012;49013;49014;49015;49016;49017;49018;49019 49013 9 FSPEVPGQK LDQELKLFVSRHSARFSPEVPGQKILHHRS SRHSARFSPEVPGQKILHHRSDVLETVVLI R F S Q K I 0 0 0 0 0 1 1 1 0 0 0 1 0 1 2 1 0 0 0 1 0 0 9 0 987.50255 P46821;D6RA32;D6RGJ3 P46821 90 98 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.019275 40.002 By MS/MS 1 0.72232 0.69338 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72232 0.69338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1871500 1134900 736630 0 0 0 0 0 0 0 0 0 1871500 1134900 736630 0 0 0 0 0 0 9917 2347 10322 49151 49020;49021 49020 2 FSPFGDIQDIWVVR LVISKYTPESVLRERFSPFGDIQDIWVVRD RFSPFGDIQDIWVVRDKHTKESKGIAFVKF R F S V R D 0 1 0 2 0 1 0 1 0 2 0 0 0 2 1 1 0 1 0 2 0 0 14 0 1677.8515 Q8IUH3 Q8IUH3 45 58 RBM45 RNA-binding protein 45 yes yes 2 0.0011401 50.284 By MS/MS By matching By MS/MS 2 1 1 0.89786 0.92489 20.799 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80637 0.82548 22.083 2 0 Median 1.3216 1.1661 NaN 1 0 Median 0.87672 0.88645 NaN 1 0 Median NaN NaN NaN 0 0 Median 5403300 2767600 2635700 0 0 0 0 0 0 4053200 2074900 1978300 154250 64654 89594 1195900 628020 567830 0 0 0 9918 3314 10323 49152;49153;49154;49155 49022;49023;49024;49025 49023 4 FSPFPVQDRPESSLVFK PQEDATASPPRQKDKFSPFPVQDRPESSLV PFPVQDRPESSLVFKDTLRTPPRERSGAGS K F S F K D 0 1 0 1 0 1 1 0 0 0 1 1 0 3 3 3 0 0 0 2 0 0 17 1 1979.0153 Q9UQ35 Q9UQ35 1187 1203 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.0071888 24.918 By MS/MS 2 0.67713 0.69527 3.7046 2 Median 0.67713 0.69527 3.7046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12186000 6279900 5906200 12186000 6279900 5906200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9919 4359 10324 49156;49157 49026;49027 49027 2 FSPIPFPPLSYK VAVYTTTVHWLESRRFSPIPFPPLSYKHDT SRRFSPIPFPPLSYKHDTKLLILALERLKE R F S Y K H 0 0 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 12 0 1391.7489 Q6P2Q9;I3L0J9 Q6P2Q9 822 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00063627 63.426 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 0.66514 0.61826 18.901 8 Median 0.5988 0.57995 8.0422 2 0 Median 0.94393 0.83989 10.021 2 0 Median 0.53973 0.59566 NaN 1 0 Median 0.88217 0.81268 NaN 1 0 Median 0.53226 0.55823 NaN 1 0 Median 0.71684 0.62266 NaN 1 0 Median 23304000 14736000 8568300 2917600 2023000 894550 3851700 1903700 1948000 11463000 7527700 3934800 260020 150600 109420 4659300 3044700 1614600 153160 86227 66937 9920 3157 10325 49158;49159;49160;49161;49162;49163;49164;49165 49028;49029;49030;49031;49032;49033 49029 6 FSPLMTAAVLGTR GLTVMDLEAEGTCLRFSPLMTAAVLGTRGE LRFSPLMTAAVLGTRGEDVDQLVACIESKL R F S T R G 2 1 0 0 0 0 0 1 0 0 2 0 1 1 1 1 2 0 0 1 0 0 13 0 1362.733 Q6P996;H3BND4 Q6P996 459 471 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 3.3165E-05 91.855 By MS/MS By MS/MS By matching 1 1 2 1.0983 0.98944 44.271 4 Median 1.0383 0.99451 NaN 1 0 Median 1.6657 1.4434 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79113 0.70078 48.059 2 0 Median 8780100 4147800 4632300 4977500 2544100 2433400 3516000 1448600 2067400 0 0 0 0 0 0 0 0 0 286610 155170 131430 9921 3164 10326 49166;49167;49168;49169 49034;49035;49036 49034 3 FSPNGEWLASSSADK KFTLAGHTKAVSSVKFSPNGEWLASSSADK FSPNGEWLASSSADKLIKIWGAYDGKFEKT K F S D K L 2 0 1 1 0 0 1 1 0 0 1 1 0 1 1 4 0 1 0 0 0 0 15 0 1594.7264 P61964;V9GZ59 P61964 53 67 WDR5 WD repeat-containing protein 5 yes no 2 4.7722E-06 86.772 By MS/MS By matching By MS/MS 1 1 3 0.91987 0.80867 19.196 5 Median 1.1227 1.0492 NaN 1 0 Median 0.95376 0.80867 NaN 1 0 Median 0.79723 0.79518 16.64 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42931000 22029000 20901000 6885200 3388100 3497100 349320 144670 204660 35696000 18496000 17200000 0 0 0 0 0 0 0 0 0 9922 2564 10327 49170;49171;49172;49173;49174 49037;49038;49039;49040;49041 49040 5 FSPNLDSYGWLVSGGQSGLVR LCLDRLQLEAIHKVRFSPNLDSYGWLVSGG SYGWLVSGGQSGLVRIHFVRGLASPLGHRM R F S V R I 0 1 1 1 0 1 0 4 0 0 3 0 0 1 1 4 0 1 1 2 0 0 21 0 2238.1069 Q8WUA4;H0Y4Q6 Q8WUA4 842 862 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 6.5668E-06 40.552 By MS/MS 1 0.80889 0.86576 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80889 0.86576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2410800 1310100 1100700 0 0 0 0 0 0 2410800 1310100 1100700 0 0 0 0 0 0 0 0 0 9923 3487 10328 49175 49042 49042 1 FSPNSSNPIIVSCGWDK TVQDESHSEWVSCVRFSPNSSNPIIVSCGW PNSSNPIIVSCGWDKLVKVWNLANCKLKTN R F S D K L 0 0 2 1 1 0 0 1 0 2 0 1 0 1 2 4 0 1 0 1 0 0 17 0 1906.8883 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;D6RBD0;H0Y8R5 P63244 156 172 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 3.0722E-05 53.252 By MS/MS By matching By matching 1 1 1 0.78064 0.72843 7.3683 3 Median 0.78064 0.72843 NaN 1 0 Median 0.87304 0.73252 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7749 0.64301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12060000 6152400 5907400 8180400 4108100 4072300 3810700 2006000 1804600 0 0 0 68737 38187 30550 0 0 0 0 0 0 9924 2624 10329 49176;49177;49178 49043 49043 1 FSPNTSQFLLVSSWDTSVR FKLNQPPEDGISSVKFSPNTSQFLLVSSWD TSQFLLVSSWDTSVRLYDVPANSMRLKYQH K F S V R L 0 1 1 1 0 1 0 0 0 0 2 0 0 2 1 5 2 1 0 2 0 0 19 0 2170.0695 O43684;J3QT28;J3QSX4 O43684 22 40 BUB3 Mitotic checkpoint protein BUB3 yes no 2;3 4.6237E-07 68.809 By MS/MS 3 1.0847 1.1612 43.554 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0847 1.1612 43.554 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13428000 8482700 4945500 0 0 0 0 0 0 13428000 8482700 4945500 0 0 0 0 0 0 0 0 0 9925 1357 10330 49179;49180;49181 49044;49045;49046 49044 3 FSPSPLSIK LLKQPVPKQIERYSRFSPSPLSIKQFLDFG IERYSRFSPSPLSIKQFLDFGRDNACEKTS R F S I K Q 0 0 0 0 0 0 0 0 0 1 1 1 0 1 2 3 0 0 0 0 0 0 9 0 974.54368 Q15120 Q15120 22 30 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.0061752 55.37 By MS/MS 1 0.93289 0.85328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93289 0.85328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3973100000 2026700000 1946400000 0 0 0 0 0 0 0 0 0 3973100000 2026700000 1946400000 0 0 0 0 0 0 9926 2929 10331 49182 49047 49047 1 FSPTDFLAK HYNALLKVYLQNEYKFSPTDFLAKMEEANI LQNEYKFSPTDFLAKMEEANIQPNRVTYQR K F S A K M 1 0 0 1 0 0 0 0 0 0 1 1 0 2 1 1 1 0 0 0 0 0 9 0 1024.5229 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 179 187 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0022569 73.248 By MS/MS By MS/MS 2 1 1.1317 1.0228 6.345 2 Median 1.0143 0.97797 NaN 1 0 Median 1.2627 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29135000 14091000 15045000 19950000 10015000 9934800 9185600 4075700 5109800 0 0 0 0 0 0 0 0 0 0 0 0 9927 2315 10332 49183;49184;49185 49048;49049;49050;49051;49052 49051 5 FSPVATASYR LLMHCVKGIGKDHAKFSPVATASYRLLPDI KDHAKFSPVATASYRLLPDITLLEPVEGEA K F S Y R L 2 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 1 0 0 10 0 1097.5506 O15160;A0A2R8YEZ4;A0A2R8Y5D3;A0A2R8YEY5 O15160 225 234 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 0.00064148 105.52 By MS/MS By MS/MS By matching 2 1 1 0.95628 0.89119 20.281 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8012 0.82309 4.1573 2 0 Median 1.1002 0.93698 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5539 1.2615 NaN 1 0 Median 56839000 31580000 25259000 0 0 0 0 0 0 49754000 28081000 21672000 5843200 2741100 3102100 0 0 0 1242100 757240 484820 9928 1528 10333 49186;49187;49188;49189 49053;49054;49055;49056 49053 4 FSQELLSNGELNHLPLKER FQGEPKKPPMNGYQKFSQELLSNGELNHLP LLSNGELNHLPLKERMVEIGSRWQRISQSQ K F S E R M 0 1 2 0 0 1 3 1 1 0 5 1 0 1 1 2 0 0 0 0 0 0 19 1 2223.1648 P17480;E9PKP7;E9PLT2 P17480 578 596 UBTF Nucleolar transcription factor 1 yes no 3;4 5.5814E-05 39.523 By MS/MS By MS/MS 1 2 0.96029 1.0896 68.235 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96029 1.0896 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.59601 0.65555 87.125 2 1 Median NaN NaN NaN 0 0 Median 28738000 17602000 11136000 0 0 0 0 0 0 6501000 3193500 3307400 0 0 0 22237000 14408000 7828700 0 0 0 9929 2040 10334 49190;49191;49192 49057;49058;49059 49058 3 FSQEVQITEAR FAASDGIVNENLVERFSQEVQITEARCFYG LVERFSQEVQITEARCFYGFQIAMENIHSE R F S A R C 1 1 0 0 0 2 2 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 11 0 1306.6517 P31350;A0A286YFD6;C9JXC1 P31350 149 159 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 1.0299E-09 173.32 By MS/MS By MS/MS 1 1 0.97266 1.0185 16.688 2 Median 0.90058 0.90509 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0505 1.146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80818000 40646000 40172000 67922000 34936000 32986000 0 0 0 12897000 5710800 7185700 0 0 0 0 0 0 0 0 0 9930 2203 10335 49193;49194 49060;49061;49062;49063 49063 4 FSQEVQVPEAR FAASDGIVNENLVERFSQEVQVPEARCFYG LVERFSQEVQVPEARCFYGFQILIENVHSE R F S A R C 1 1 0 0 0 2 2 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 11 0 1288.6412 Q7LG56;H0YAV1;A0A0C4DGZ6 Q7LG56 111 121 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B yes no 2 0.00091675 85.29 By MS/MS 1 0.81106 0.80525 NaN 1 Median 0.81106 0.80525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7237500 3861400 3376200 7237500 3861400 3376200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9931 1168 10336 49195 49064 49064 1 FSQFLETEYK FLRELAKVKQENKLKFSQFLETEYKVKINP ENKLKFSQFLETEYKVKINPSSMFDVQVKR K F S Y K V 0 0 0 0 0 1 2 0 0 0 1 1 0 2 0 1 1 0 1 0 0 0 10 0 1290.6132 P06737;E9PK47 P06737 546 555 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.00041689 122.13 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.193 1.108 9.4105 6 Median 1.0969 1.0522 4.9859 2 0 Median 1.245 1.0879 NaN 1 0 Median 1.2054 1.2733 4.6447 2 1 Median 1.2959 1.1264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38907000 17144000 21763000 21472000 9694800 11777000 8964300 3752200 5212100 7772200 3392200 4380100 698350 304800 393550 0 0 0 0 0 0 9932 1874 10337 49196;49197;49198;49199;49200;49201 49065;49066;49067;49068;49069 49065 5 FSQIVNLK LDDVDAAFDKIQQLKFSQIVNLKGKGHGLS DKIQQLKFSQIVNLKGKGHGLSITPLPAGH K F S L K G 0 0 1 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 8 0 947.54402 Q9P2I0 Q9P2I0 131 138 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.029872 69.176 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9933 4223 10338 49202 49070 49070 1 FSQLAEAYEVLSDEVK YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV SQLAEAYEVLSDEVKRKQYDAYGSAGFDPG K F S V K R 2 0 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 16 0 1826.8938 Q96EY1 Q96EY1 135 150 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 8.4051E-05 74.76 By matching By MS/MS By matching 1 1 1 1.3757 1.1864 17.172 3 Median 1.5842 1.5444 NaN 1 0 Median 1.3757 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2902 1.1188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2482500 1037200 1445300 316590 132920 183670 2070900 865940 1205000 0 0 0 94955 38342 56614 0 0 0 0 0 0 9934 3643 10339 49203;49204;49205 49071 49071 1 FSQLAEAYEVLSDEVKR YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV QLAEAYEVLSDEVKRKQYDAYGSAGFDPGA K F S K R K 2 1 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 17 1 1982.9949 Q96EY1 Q96EY1 135 151 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 3 0.0015578 27.496 By MS/MS By MS/MS 1 1 1.2496 1.2885 1.3306 2 Median NaN NaN NaN 0 0 Median 1.3891 1.3007 NaN 1 0 Median 1.1241 1.2765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3716600 1535800 2180700 0 0 0 2382700 939410 1443300 1333800 596420 737400 0 0 0 0 0 0 0 0 0 9935 3643 10340 49206;49207 49072;49073 49073 2 FSQMLHPIFEEASDVIKEEFPNENQVVFAR NADVALVNFYADWCRFSQMLHPIFEEASDV IKEEFPNENQVVFARVDCDQHSDIAQRYRI R F S A R V 2 1 2 1 0 2 5 0 1 2 1 1 1 4 2 2 0 0 0 3 0 0 30 1 3549.7239 Q9BS26 Q9BS26 60 89 ERP44 Endoplasmic reticulum resident protein 44 yes yes 4 6.2036E-37 89.181 By MS/MS 1 0.80447 0.75527 NaN 1 Median NaN NaN NaN 0 0 Median 0.80447 0.75527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4068200 2140900 1927400 0 0 0 4068200 2140900 1927400 0 0 0 0 0 0 0 0 0 0 0 0 9936 3809 10341 49208 49074;49075 49075 2 FSQMLQDKPLR KPKSGRVWKDRSKKRFSQMLQDKPLRTSWQ SKKRFSQMLQDKPLRTSWQRKMKERQERKL R F S L R T 0 1 0 1 0 2 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 11 1 1361.7126 Q9H6F5 Q9H6F5 254 264 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2;3 4.8299E-05 93.258 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 5 5 0.94246 0.92983 52.871 13 Median NaN NaN NaN 0 0 Median 4.9778 5.9701 NaN 1 0 Median 0.77151 0.86136 NaN 1 0 Median 1.1399 1.0696 NaN 1 0 Median 0.92169 0.95865 13.79 5 0 Median 0.94246 0.85014 18.967 5 0 Median 112380000 58221000 54162000 0 0 0 3642700 594030 3048700 3728000 2170500 1557500 1455500 696220 759290 88039000 47072000 40967000 15517000 7688000 7829100 9937 3974 10342;10343 49209;49210;49211;49212;49213;49214;49215;49216;49217;49218;49219;49220;49221 49076;49077;49078;49079;49080;49081;49082;49083;49084 49079 1860 8 FSQSTGDIDKVTDTKPR LSDDEITMMAPVESKFSQSTGDIDKVTDTK QSTGDIDKVTDTKPRVAEWRYGPARLWYDM K F S P R V 0 1 0 3 0 1 0 1 0 1 0 2 0 1 1 2 3 0 0 1 0 0 17 2 1893.9432 P21675 P21675 321 337 TAF1 Transcription initiation factor TFIID subunit 1 yes yes 4 0.0038307 40.515 By MS/MS 1 0.55616 0.73478 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55616 0.73478 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7005600 4198800 2806900 0 0 0 0 0 0 7005600 4198800 2806900 0 0 0 0 0 0 0 0 0 9938 2091 10344 49222 49085 49085 1 FSQYFYEAPIFTIPGR DMKLIVTSATLDAVKFSQYFYEAPIFTIPG SQYFYEAPIFTIPGRTYPVEILYTKEPETD K F S G R T 1 1 0 0 0 1 1 1 0 2 0 0 0 3 2 1 1 0 2 0 0 0 16 0 1934.9567 F5H658;Q14562 F5H658 725 740 DHX8 ATP-dependent RNA helicase DHX8 yes no 2 0.014833 42.556 By MS/MS 1 0.88857 0.96912 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88857 0.96912 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1880000 1085800 794270 0 0 0 0 0 0 1880000 1085800 794270 0 0 0 0 0 0 0 0 0 9939 1040 10345 49223 49086 49086 1 FSREEFPTLQAAGDQDK GAHGDGGRASSLLSRFSREEFPTLQAAGDQ REEFPTLQAAGDQDKAAKERESAEQSSGPG R F S D K A 2 1 0 2 0 2 2 1 0 0 1 1 0 2 1 1 1 0 0 0 0 0 17 1 1937.9119 P48634 P48634 165 181 PRRC2A Protein PRRC2A yes yes 3 8.3967E-06 57.499 By MS/MS 1 0.83824 0.84258 NaN 1 Median 0.83824 0.84258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10339000 5318100 5021200 10339000 5318100 5021200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9940 2363 10346 49224 49087;49088 49087 2 FSSCGGGGGSFGAGGGFGSR TTSSSTRRSGGGGGRFSSCGGGGGSFGAGG GGGGSFGAGGGFGSRSLVNLGGSKSISISV R F S S R S 1 1 0 0 1 0 0 10 0 0 0 0 0 3 0 4 0 0 0 0 0 0 20 0 1764.7274 P04264;CON__P04264 P04264 46 65 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 3.2659E-69 184.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 12 7 8 7 4 0.064766 0.063216 171.11 11 Median 0.064766 0.063216 NaN 1 1 Median 0.0023186 0.0019627 113.98 3 3 Median 0.11569 0.1229 135.32 2 2 Median 0.085615 0.074549 22.697 3 3 Median 0.073023 0.074167 NaN 1 1 Median 0.13468 0.11014 NaN 1 1 Median 341350000 338240000 3107900 48728000 47970000 758440 115900000 115420000 471270 66814000 66272000 541620 13449000 13162000 286280 82172000 81204000 968050 14287000 14205000 82231 + 9941 1848 10347 49225;49226;49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254;49255;49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270 49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101;49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119;49120;49121;49122;49123;49124;49125;49126;49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149 49105 61 FSSELEQIELHNSIR SKKDACELIERYLNRFSSELEQIELHNSIR FSSELEQIELHNSIRDRQGRRHCSRETVIK R F S I R D 0 1 1 0 0 1 3 0 1 2 2 0 0 1 0 3 0 0 0 0 0 0 15 0 1800.9006 D6RA57;H0Y9X1;Q96EY4 D6RA57 85 99 TMA16 Translation machinery-associated protein 16 yes no 2;3 9.1447E-05 67.776 By MS/MS By MS/MS By matching By matching 2 2 2 1 1.1088 1.0536 37.34 7 Median 1.0244 0.96984 11.718 2 0 Median NaN NaN NaN 0 0 Median 1.0311 0.98866 10.552 2 0 Median 0.86345 0.70671 69.01 2 0 Median 1.46 1.4122 NaN 1 0 Median NaN NaN NaN 0 0 Median 41775000 18995000 22780000 28692000 12997000 15695000 0 0 0 11792000 5421800 6370000 738760 360930 377830 552130 215110 337020 0 0 0 9942 811 10348 49271;49272;49273;49274;49275;49276;49277 49150;49151;49152;49153;49154 49151 5 FSSETWQNLGTLHR SGQARFSVLLLHGIRFSSETWQNLGTLHRL RFSSETWQNLGTLHRLAQAGYRAVAIDLPG R F S H R L 0 1 1 0 0 1 1 1 1 0 2 0 0 1 0 2 2 1 0 0 0 0 14 0 1674.8114 Q96IU4;B4DQI4;F8W9U3 Q96IU4 43 56 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 2;3 3.1402E-06 89.231 By MS/MS By MS/MS 2 1 1.3481 1.2106 36.984 2 Median 0.97999 0.93204 NaN 1 0 Median 1.8545 1.5725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51414000 25081000 26333000 48942000 24355000 24587000 2472600 726280 1746300 0 0 0 0 0 0 0 0 0 0 0 0 9943 3679 10349 49278;49279;49280 49155;49156;49157;49158 49155 4 FSSIQMQLK SPKEIERMVSIIHRKFSSIQMQLKQSTCEA SIIHRKFSSIQMQLKQSTCEAVMILRSRFL K F S L K Q 0 0 0 0 0 2 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 0 9 0 1080.5638 H0YKH1;A0A087X0P4;H0YLF5;A0A0A0MTI0;P40424;H0YLD4;H0YLT4;H0YLB0;Q5JS98;P40426;U3KQA2;H0Y5D0 H0YKH1 136 144 PBX1;PBX3 Pre-B-cell leukemia transcription factor 1;Pre-B-cell leukemia transcription factor 3 no no 2 0.0011181 85.064 By MS/MS 1 0.77851 0.81158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77851 0.81158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7671900 4222400 3449400 0 0 0 0 0 0 7671900 4222400 3449400 0 0 0 0 0 0 0 0 0 9944 108;2287 10350 49281 49159 49159 1 FSSPDEIDLPR ELKEELVLKTQNQPRFSSPDEIDLPRELED NQPRFSSPDEIDLPRELEDEVPILGRNLPW R F S P R E 0 1 0 2 0 0 1 0 0 1 1 0 0 1 2 2 0 0 0 0 0 0 11 0 1274.6143 Q5JRA6;A0A0A0MRH6 Q5JRA6 632 642 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.042268 27.115 By MS/MS 1 1.0735 0.90456 NaN 1 Median NaN NaN NaN 0 0 Median 1.0735 0.90456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2124700 1111800 1012900 0 0 0 2124700 1111800 1012900 0 0 0 0 0 0 0 0 0 0 0 0 9945 3049 10351 49282 49160 49160 1 FSSQELILR NWQTAFNRQAHHTDKFSSQELILRRGQNFQ AHHTDKFSSQELILRRGQNFQVLMIMNKGL K F S L R R 0 1 0 0 0 1 1 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 9 0 1091.5975 A0A494C0J7;Q08188 A0A494C0J7 44 52 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 2 0.025154 52.482 By MS/MS 1 0.21013 0.15176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21013 0.15176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 311100 242530 68564 0 0 0 0 0 0 0 0 0 311100 242530 68564 0 0 0 0 0 0 9946 459 10352 49283 49161 49161 1 FSSSGDFLVAGVGQEHR LLCDIPLVGFINSLKFSSSGDFLVAGVGQE SSGDFLVAGVGQEHRLGRWWRIKEARNSVC K F S H R L 1 1 0 1 0 1 1 3 1 0 1 0 0 2 0 3 0 0 0 2 0 0 17 0 1791.854 O43818 O43818 429 445 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2;3 6.3478E-06 60.209 By matching By matching By matching By MS/MS By matching 2 1 1 3 4 1.1852 1.1027 28.627 11 Median 0.98716 0.97125 5.41 2 0 Median NaN NaN NaN 0 0 Median 1.4851 1.5498 NaN 1 0 Median 1.7589 1.5288 NaN 1 0 Median 1.0708 1.0659 34.777 3 0 Plateau 1.4505 1.1147 17.938 4 0 Median 62985000 28688000 34297000 32051000 14556000 17495000 0 0 0 3388400 1730500 1657900 564380 208930 355450 23589000 10812000 12778000 3392300 1381300 2011000 9947 1594 10353 49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294 49162;49163;49164 49163 3 FSSSGGGGGGGRFSSSSGYGGGSSR GGLGSGGSIRSSYSRFSSSGGGGGGGRFSS GRFSSSSGYGGGSSRVCGRGGGGSFGYSYG R F S S R V 0 2 0 0 0 0 0 11 0 0 0 0 0 2 0 9 0 0 1 0 0 0 25 1 2197.9373 P35527 P35527 35 59 KRT9 Keratin, type I cytoskeletal 9 yes yes 3 4.4277E-21 86.856 By MS/MS By MS/MS 6 1 0.074131 0.063205 NaN 1 Median NaN NaN NaN 0 0 Median 0.074131 0.063205 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12600000 12531000 68338 0 0 0 11191000 11122000 68338 0 0 0 1409100 1409100 0 0 0 0 0 0 0 + 9948 2242 10354 49295;49296;49297;49298;49299;49300;49301 49165;49166;49167;49168;49169;49170;49171 49165 7 FSSSSGYGGGSSR YSRFSSSGGGGGGGRFSSSSGYGGGSSRVC GRFSSSSGYGGGSSRVCGRGGGGSFGYSYG R F S S R V 0 1 0 0 0 0 0 4 0 0 0 0 0 1 0 6 0 0 1 0 0 0 13 0 1234.5214 P35527;CON__P35527 P35527 47 59 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.892E-08 124.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 9 3 11 2 5 0.048102 0.042082 115.93 14 Median 0.029255 0.02878 3.3697 2 2 Median 0.068803 0.058877 104.93 3 3 Median 0.14622 0.16029 146.08 2 2 Median 0.050145 0.04455 44.397 5 5 Median NaN NaN NaN 0 0 Median 0.0068618 0.0055206 45.053 2 2 Median 67474000 66774000 700300 7695300 7583400 111930 22331000 22069000 261720 2640400 2531000 109450 13401000 13247000 153830 7240900 7240900 0 14166000 14102000 63374 + 9949 2242 10355 49302;49303;49304;49305;49306;49307;49308;49309;49310;49311;49312;49313;49314;49315;49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335;49336 49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186;49187;49188;49189;49190;49191;49192;49193;49194;49195;49196;49197;49198;49199;49200;49201;49202;49203;49204;49205;49206 49198 35 FSSYYLSLPPEMR AAHGLELRVPFLDHRFSSYYLSLPPEMRIP HRFSSYYLSLPPEMRIPKNGIEKHLLRETF R F S M R I 0 1 0 0 0 0 1 0 0 0 2 0 1 1 2 3 0 0 2 0 0 0 13 0 1588.7596 P08243 P08243 425 437 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2 0.001095 59.426 By MS/MS By MS/MS 1 1 0.92325 0.85606 46.949 2 Median 1.1978 1.1931 NaN 1 0 Median 0.71163 0.61422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4406700 2149500 2257200 2849100 1245400 1603700 1557600 904090 653480 0 0 0 0 0 0 0 0 0 0 0 0 9950 1901 10356 49337;49338 49207;49208;49209 49207 3 FSTELER EEKKRLQTQVELQARFSTELEREKLIRQQM TQVELQARFSTELEREKLIRQQMEEQVAQK R F S E R E 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 7 0 880.42905 Q9UH65;E7EMB1 Q9UH65 387 393 SWAP70 Switch-associated protein 70 yes no 2 0.012003 79.116 By MS/MS 1 1.1901 1.0298 NaN 1 Median NaN NaN NaN 0 0 Median 1.1901 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9303700 3946600 5357100 0 0 0 9303700 3946600 5357100 0 0 0 0 0 0 0 0 0 0 0 0 9951 4270 10357 49339 49210 49210 1 FSTFFDDAPVFR ELKVLVASATMDTARFSTFFDDAPVFRIPG TARFSTFFDDAPVFRIPGRRFPVDIFYTKA R F S F R I 1 1 0 2 0 0 0 0 0 0 0 0 0 4 1 1 1 0 0 1 0 0 12 0 1447.6772 O60231;A0A140T947;Q5SQH5;A0A140T9T4 O60231 560 571 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.00042336 79.148 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 2 2 1 1.006 1.0056 17.948 10 Median 1.0206 0.98686 28.711 3 0 Median 1.0836 0.97094 14.672 2 0 Median 0.95634 1.0331 1.1579 2 0 Median 1.0027 0.84294 6.3754 2 0 Median 1.0996 1.1639 NaN 1 0 Median NaN NaN NaN 0 0 Median 14825000 7206700 7618200 6537300 3092300 3445000 1680800 755810 924970 5274000 2756100 2517900 756470 370970 385510 576400 231560 344840 0 0 0 9952 1605 10358 49340;49341;49342;49343;49344;49345;49346;49347;49348;49349 49211;49212;49213;49214;49215 49212 5 FSTHESAAHAIVSVNGTTIEGHVVK MEIRVFPEKGYSFVRFSTHESAAHAIVSVN IVSVNGTTIEGHVVKCYWGKESPDMTKNFQ R F S V K C 3 0 1 0 0 0 2 2 3 2 0 1 0 1 0 3 3 0 0 4 0 0 25 0 2590.314 Q01085 Q01085 247 271 TIAL1 Nucleolysin TIAR yes yes 4 3.4983E-05 32.04 By MS/MS By matching 2 2 0.95923 0.87401 11.932 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98035 0.98747 10.481 2 0 Median 0.95151 0.82664 1.0989 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32179000 14633000 17546000 0 0 0 0 0 0 27188000 12255000 14933000 4991100 2377900 2613200 0 0 0 0 0 0 9953 2682 10359 49350;49351;49352;49353 49216;49217 49217 2 FSTLTDDPSPR KEKQEKDKDDLGPDRFSTLTDDPSPRLSAQ GPDRFSTLTDDPSPRLSAQAQVAEDILDKY R F S P R L 0 1 0 2 0 0 0 0 0 0 1 0 0 1 2 2 2 0 0 0 0 0 11 0 1234.583 Q14C86 Q14C86 1011 1021 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes yes 2 0.00053536 67.704 By matching By MS/MS 1 1 0.79593 0.72176 33.101 2 Median 0.94216 0.91211 NaN 1 0 Median 0.6724 0.57114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7176600 4052100 3124500 3905800 1989900 1915900 3270800 2062100 1208600 0 0 0 0 0 0 0 0 0 0 0 0 9954 2907 10360 49354;49355 49218 49218 1 FSTPEQAAK GSCSYKDFSESRNNRFSTPEQAAKNRIQHP ESRNNRFSTPEQAAKNRIQHPSNVLHFFNA R F S A K N 2 0 0 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 9 0 977.48181 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0 P14866 485 493 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.00052246 107.66 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 4 3 0.88117 0.90063 8.5337 9 Median NaN NaN NaN 0 0 Median 1.1888 0.99695 NaN 1 1 Median 0.84032 0.81921 NaN 1 0 Median 0.88117 0.74523 NaN 1 0 Median 0.87196 0.91603 3.1499 3 0 Plateau 1.1043 0.90063 2.0614 3 1 Median 37642000 17992000 19649000 0 0 0 9108200 3571900 5536300 10229000 5443100 4785400 86019 49697 36322 2702900 1443500 1259400 15516000 7484000 8032000 9955 2011;436;1419 10361 49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366 49219;49220;49221;49222;49223;49224;49225;49226 49226 8 FSTSSLLLR FRPKDPYCHPVCANRFSTSSLLLRIRKRTR PVCANRFSTSSLLLRIRKRTRRQKGVLGTE R F S L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 3 1 0 0 0 0 0 9 0 1022.576 Q9Y5Q8;Q5T7U1;Q5T7U4 Q9Y5Q8 79 87 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0006654 106.04 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.337 1.1576 20.297 5 Median 1.1054 1.1065 38.117 2 0 Median 1.337 1.1576 NaN 1 0 Median 0.99088 0.987 NaN 1 0 Median 1.3761 1.1824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22270000 10636000 11634000 4301700 1917600 2384000 1081100 471690 609380 16653000 8149900 8502700 235060 97141 137920 0 0 0 0 0 0 9956 4466 10362 49367;49368;49369;49370;49371 49227;49228;49229 49229 3 FSTVAGESGSADTVRDPR KVFEHIGKKTPIAVRFSTVAGESGSADTVR VAGESGSADTVRDPRGFAVKFYTEDGNWDL R F S P R G 2 2 0 2 0 0 1 2 0 0 0 0 0 1 1 3 2 0 0 2 0 0 18 1 1850.8759 P04040 P04040 113 130 CAT Catalase yes yes 2;3 0.0042488 37.426 By MS/MS 3 0.69398 0.68373 20.123 3 Median 0.69398 0.68373 20.123 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32257000 19265000 12992000 32257000 19265000 12992000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9957 1841 10363 49372;49373;49374 49230;49231 49231 2 FSTWTNTEFR LNDSPVGLAAYILEKFSTWTNTEFRYLEDG YILEKFSTWTNTEFRYLEDGGLERKFSLDD K F S F R Y 0 1 1 0 0 0 1 0 0 0 0 0 0 2 0 1 3 1 0 0 0 0 10 0 1287.5884 P07099 P07099 329 338 EPHX1 Epoxide hydrolase 1 yes yes 2 0.00039083 78.934 By MS/MS By matching 1 2 1.2924 1.1277 2.5024 3 Median 1.1655 1.1045 NaN 1 0 Median 1.315 1.1442 2.0526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20795000 9125900 11669000 18451000 8100800 10350000 2344200 1025100 1319000 0 0 0 0 0 0 0 0 0 0 0 0 9958 1879 10364 49375;49376;49377 49232;49233 49233 2 FSTYTSDKDENKLSEASGGR RDVDETGITVASLERFSTYTSDKDENKLSE SDKDENKLSEASGGRAENGERSDLEEDNER R F S G R A 1 1 1 2 0 0 2 2 0 0 1 2 0 1 0 4 2 0 1 0 0 0 20 2 2191.0029 Q8WU90 Q8WU90 355 374 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 3;4 0.0074496 23.172 By MS/MS 4 1.0723 1.1794 15.505 4 Median 1.0723 1.1794 15.505 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15470000 7777400 7692300 15470000 7777400 7692300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9959 3485 10365 49378;49379;49380;49381 49234;49235;49236;49237 49236 4 FSVASSGLSENASQAPARPLSTNLYR PTAPTSACSPSFFDRFSVASSGLSENASQA ASQAPARPLSTNLYRSVSVDIRRTPEEEFS R F S Y R S 4 2 2 0 0 1 1 1 0 0 3 0 0 1 2 6 1 0 1 1 0 0 26 1 2722.3675 Q6UB99 Q6UB99 1764 1789 ANKRD11 Ankyrin repeat domain-containing protein 11 yes yes 3 9.8627E-22 84.762 By MS/MS 1 0.43736 0.48066 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43736 0.48066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9068700 6289000 2779700 0 0 0 0 0 0 9068700 6289000 2779700 0 0 0 0 0 0 0 0 0 9960 3184 10366 49382 49238 49238 1 FSVCVLGDQQHCDEAK RFSGTVRLKSTPRPKFSVCVLGDQQHCDEA SVCVLGDQQHCDEAKAVDIPHMDIEALKKL K F S A K A 1 0 0 2 2 2 1 1 1 0 1 1 0 1 0 1 0 0 0 2 0 0 16 0 1891.8193 P62906 P62906 63 78 RPL10A 60S ribosomal protein L10a yes yes 3 8.379E-06 69.331 By MS/MS 1 1.2314 1.0297 NaN 1 Median NaN NaN NaN 0 0 Median 1.2314 1.0297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11880000 4973300 6907100 0 0 0 11880000 4973300 6907100 0 0 0 0 0 0 0 0 0 0 0 0 9961 2608 10367 49383 49239 49239 1 FSVGGMTDVAEIK IARSIARALNREYFRFSVGGMTDVAEIKGH FRFSVGGMTDVAEIKGHRRTYVGAMPGKII R F S I K G 1 0 0 1 0 0 1 2 0 1 0 1 1 1 0 1 1 0 0 2 0 0 13 0 1352.6646 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 433 445 LONP1 Lon protease homolog, mitochondrial yes no 2 0.00013179 83.862 By MS/MS By matching By MS/MS 2 1 1 1.0608 1.0085 22.144 4 Median 0.84738 0.8402 24.299 2 0 Median 1.1287 1.0194 NaN 1 0 Median 1.0933 1.1978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18626000 9282600 9343100 10462000 5426500 5035300 344900 149520 195390 7819000 3706500 4112500 0 0 0 0 0 0 0 0 0 9962 1370 10368 49384;49385;49386;49387 49240;49241;49242;49243 49242 4 FSVLMQMR YAANPGQLFGRIPMRFSVLMQMRFDGLLGF FGRIPMRFSVLMQMRFDGLLGFPGGFVDRR R F S M R F 0 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 0 0 1 0 0 8 0 1010.5041 Q9BRJ7;K7ENA3;W4VSQ8 Q9BRJ7 48 55 NUDT16L1 Protein syndesmos yes no 2 0.0047788 79.597 By matching By MS/MS By matching By MS/MS 1 2 2 2 1.2296 1.1775 15.415 7 Median NaN NaN NaN 0 0 Median 1.0119 0.86302 NaN 1 0 Median 1.2406 1.1881 1.2605 2 0 Median 1.2259 1.0102 2.6225 2 0 Median 1.2677 1.2943 6.5046 2 0 Median NaN NaN NaN 0 0 Median 14450000 6096200 8353300 0 0 0 280620 156620 124000 9059000 3783500 5275600 1325400 615010 710380 3784500 1541200 2243300 0 0 0 9963 3796 10369;10370 49388;49389;49390;49391;49392;49393;49394 49244;49245;49246;49247;49248;49249 49247 1830 6 FSVPGFKAEGPEVDVNLPK GPDWHLKMPKMKMPKFSVPGFKAEGPEVDV GFKAEGPEVDVNLPKADVDISGPKIDVTAP K F S P K A 1 0 1 1 0 0 2 2 0 0 1 2 0 2 3 1 0 0 0 3 0 0 19 1 2029.052 Q09666 Q09666 757 775 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 1.047E-06 53.278 By MS/MS By matching 2 1 0.70976 0.77293 32.984 3 Median 0.76677 0.80193 5.2083 2 0 Median 0.49749 0.45454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22780000 12461000 10319000 20409000 10932000 9476300 2371700 1528800 842850 0 0 0 0 0 0 0 0 0 0 0 0 9964 2749 10371 49395;49396;49397 49250 49250 1 FSVSGEGEGDATYGK VPVLVELDGDVNGQKFSVSGEGEGDATYGK FSVSGEGEGDATYGKLTLNFICTTGKLPVP K F S G K L 1 0 0 1 0 0 2 4 0 0 0 1 0 1 0 2 1 0 1 1 0 0 15 0 1502.6525 CON__Q9U6Y5;P37840 P37840 167 181 SNCA Alpha-synuclein no no 2 1.6136E-35 210.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 19 16 9 9 10 1.4349 1.3721 74.53 56 Median 1.1416 1.0375 26.337 14 0 Median 1.1916 1.011 10.865 10 1 Median 1.4587 1.4725 35.849 10 1 Median 1.8042 1.5827 81.677 9 2 Median 10.836 10.893 46.543 5 1 Median 4.4386 3.6716 20.499 8 2 Median 3916100000 1579100000 2337000000 2035700000 924680000 1111000000 712340000 322500000 389840000 518200000 199790000 318410000 279060000 86769000 192290000 225510000 19989000 205530000 145320000 25407000 119920000 + 9965 2271;795 10372 49398;49399;49400;49401;49402;49403;49404;49405;49406;49407;49408;49409;49410;49411;49412;49413;49414;49415;49416;49417;49418;49419;49420;49421;49422;49423;49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435;49436;49437;49438;49439;49440;49441;49442;49443;49444;49445;49446;49447;49448;49449;49450;49451;49452;49453;49454;49455;49456;49457;49458;49459;49460;49461;49462;49463;49464;49465;49466;49467;49468;49469;49470;49471;49472;49473;49474 49251;49252;49253;49254;49255;49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282;49283;49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298;49299;49300;49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311;49312;49313;49314;49315;49316;49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335;49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348;49349;49350;49351;49352;49353;49354;49355;49356;49357;49358;49359;49360;49361;49362;49363;49364;49365;49366;49367;49368;49369;49370;49371;49372;49373;49374;49375;49376;49377;49378;49379;49380;49381;49382;49383;49384;49385;49386;49387;49388;49389;49390;49391;49392;49393;49394;49395;49396;49397;49398;49399;49400;49401;49402;49403;49404;49405;49406;49407;49408;49409;49410;49411;49412;49413;49414;49415;49416;49417;49418;49419;49420;49421;49422;49423;49424;49425;49426;49427;49428;49429;49430;49431;49432;49433;49434;49435;49436;49437;49438;49439;49440;49441;49442;49443;49444;49445;49446;49447;49448;49449;49450;49451;49452;49453;49454;49455;49456;49457;49458;49459;49460;49461;49462;49463;49464;49465;49466;49467;49468;49469;49470;49471;49472;49473;49474;49475;49476;49477;49478;49479;49480;49481;49482;49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505;49506;49507;49508;49509;49510;49511;49512;49513;49514;49515;49516;49517;49518;49519;49520;49521 49466 270 FSVSGEGEGDATYGKLTLK VPILVELDGDVNGHKFSVSGEGEGDATYGK GEGEGDATYGKLTLKFICTTGKLPVPWPTL K F S L K F 1 0 0 1 0 0 2 4 0 0 2 2 0 1 0 2 2 0 1 1 0 0 19 1 1957.9633 CON__Q9U6Y5 CON__Q9U6Y5 27 45 yes yes 2;3 3.7612E-07 75.669 By MS/MS 2 1.1548 1.0746 3.457 2 Median 1.1548 1.0746 3.457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22519000 10309000 12210000 22519000 10309000 12210000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 9966 795 10373 49475;49476 49522;49523;49524 49523 3 FSVSGLKAEGPDVAVDLPK GPDWNLKMPKMKMPKFSVSGLKAEGPDVAV GLKAEGPDVAVDLPKGDINIEGPSMNIEGP K F S P K G 2 0 0 2 0 0 1 2 0 0 2 2 0 1 2 2 0 0 0 3 0 0 19 1 1928.0255 Q09666 Q09666 3482 3500 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.2548E-06 51.348 By MS/MS By MS/MS By matching 2 2 1 0.80466 0.91197 25.819 5 Median 0.71817 0.78191 12.309 2 0 Median NaN NaN NaN 0 0 Median 0.98667 1.1291 30.204 2 0 Median NaN NaN NaN 0 0 Median 1.0692 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median 61307000 34810000 26496000 45499000 26421000 19078000 0 0 0 14290000 7707000 6582800 0 0 0 1517700 681930 835810 0 0 0 9967 2749 10374 49477;49478;49479;49480;49481 49525;49526;49527;49528;49529 49526 5 FSVSPVVR TITTFEHAHNMRVMKFSVSPVVRVAVEAKN HNMRVMKFSVSPVVRVAVEAKNPADLPKLV K F S V R V 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 3 0 0 8 0 889.50215 P13639 P13639 499 506 EEF2 Elongation factor 2 yes yes 2 0.0012131 146.94 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 5 3 3 4 0.88858 0.78141 43.09 20 Median 1.016 0.96505 5.0938 4 0 Median 0.87704 0.75546 8.2369 5 0 Median 1.0905 1.1447 16.009 3 2 Median 0.89649 0.77273 11.472 3 0 Plateau 0.72104 0.68953 82.561 3 0 Median 0.49618 0.42243 88.567 2 1 Median 894740000 462150000 432590000 315020000 152770000 162250000 479940000 258750000 221200000 62131000 30373000 31758000 22057000 11655000 10402000 9993800 4701600 5292200 5590000 3903600 1686400 9968 1992 10375 49482;49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497;49498;49499;49500;49501;49502;49503;49504;49505 49530;49531;49532;49533;49534;49535;49536;49537;49538;49539;49540;49541;49542;49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553;49554;49555;49556;49557;49558 49530 29 FSVYVTESQPDLSGKK VVLRVLEAAVAAKKRFSVYVTESQPDLSGK SVYVTESQPDLSGKKMAKALCHLNVPVTVV R F S K K M 0 0 0 1 0 1 1 1 0 0 1 2 0 1 1 3 1 0 1 2 0 0 16 1 1783.8992 Q14232;F5H0D0 Q14232 148 163 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2;3 8.023E-05 78.692 By MS/MS By matching By matching 2 2 1 1.0921 1.0447 10.655 5 Median 1.0843 1.0545 1.3173 2 0 Median 1.035 0.93255 9.8393 2 0 Median NaN NaN NaN 0 0 Median 1.3251 1.1636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28857000 14049000 14807000 24133000 11977000 12157000 3287200 1477000 1810200 0 0 0 1436200 595640 840580 0 0 0 0 0 0 9969 2866 10376 49506;49507;49508;49509;49510 49559;49560 49560 2 FSWFAGEK ELPGQLKQFSMFLGKFSWFAGEKLTFVDFL FSMFLGKFSWFAGEKLTFVDFLTYDILDQN K F S E K L 1 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 0 1 0 0 0 0 8 0 970.45487 A0A0A0MTN3;P21266 A0A0A0MTN3 149 156 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.0074119 67.169 By MS/MS By matching By matching 1 1 1 1.225 1.1185 3.9447 3 Median 1.225 1.1359 NaN 1 0 Median 1.2433 1.0541 NaN 1 0 Median 1.171 1.1185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25587000 10538000 15048000 22174000 9018800 13156000 2078300 905120 1173200 1334000 614360 719610 0 0 0 0 0 0 0 0 0 9970 197 10377 49511;49512;49513 49561;49562 49561 2 FSWNVWPSSR YLEFIQQNEERDGVRFSWNVWPSSRLEATR RDGVRFSWNVWPSSRLEATRMVVPVAALFT R F S S R L 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 3 0 2 0 1 0 0 10 0 1264.5989 F5H365;Q15436;G3V5X8;G3V4Q2;G3V4V1;G3V1W4;G3V3G5;G3V2R6;G3V5K1;A0A2R8YFH5;Q15437;Q5QPE2;A0A2R8YF30;A0A2R8Y633;A0A2R8Y7S7 F5H365 19 28 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B no no 2 0.0059578 49.715 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.9407 0.90008 11.606 4 Median 0.84371 0.79934 NaN 1 0 Median 0.98724 0.85811 NaN 1 0 Median 0.89635 0.9441 NaN 1 0 Median 1.2455 1.0439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13771000 7097600 6673000 7391300 3819800 3571400 2047600 1088400 959200 4075000 2079600 1995400 256720 109780 146950 0 0 0 0 0 0 9971 1029;401 10378 49514;49515;49516;49517 49563;49564;49565;49566;49567 49564 5 FSWSSNLMQHQR HTGEKPYACLECGKRFSWSSNLMQHQRIHT GKRFSWSSNLMQHQRIHTGEKPYTCPDCGR R F S Q R I 0 1 1 0 0 2 0 0 1 0 1 0 1 1 0 3 0 1 0 0 0 0 12 0 1519.699 Q6DD87 Q6DD87 131 142 ZNF787 Zinc finger protein 787 yes yes 3 0.00040375 52.344 By MS/MS By MS/MS 1 3 1.3714 1.1607 13.781 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3714 1.3726 NaN 1 0 Median 1.2876 1.101 7.4709 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8593400 3765500 4827900 0 0 0 0 0 0 5871900 2540100 3331700 2721500 1225400 1496100 0 0 0 0 0 0 9972 3131 10379 49518;49519;49520;49521 49568;49569;49570 49568 3 FSYAFPK NTRLIAAATSVLKTRFSYAFPKEFPYRMNH ATSVLKTRFSYAFPKEFPYRMNHILECEFY R F S P K E 1 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 7 0 858.42759 E5RFX8;E5RI39;G5E954;H0YBQ5;J3KP90;E5RFK5;P24863 E5RFX8 35 41 CCNC Cyclin-C yes no 2 0.062015 37.094 By matching By MS/MS By matching 1 1 1 0.96766 0.83827 1.1336 3 Median NaN NaN NaN 0 0 Median 0.96766 0.83866 NaN 1 0 Median 0.8635 0.82216 NaN 1 0 Median 1.0314 0.83827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4150100 2095100 2054900 0 0 0 501290 271430 229860 3438400 1732600 1705800 210380 91150 119230 0 0 0 0 0 0 9973 835 10380 49522;49523;49524 49571 49571 1 FSYEQLETDLQASR EGIIRQQEADIQNSKFSYEQLETDLQASRE KFSYEQLETDLQASRELTSRLHEEINMKEQ K F S S R E 1 1 0 1 0 2 2 0 0 0 2 0 0 1 0 2 1 0 1 0 0 0 14 0 1685.7897 Q14789 Q14789 2354 2367 GOLGB1 Golgin subfamily B member 1 yes yes 2 9.3617E-08 144.1 By MS/MS By MS/MS 1 1 1.2016 1.0909 17.063 2 Median 1.2644 1.2308 NaN 1 0 Median 1.142 0.96688 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23023000 10058000 12965000 18872000 8168600 10703000 4151200 1888900 2262300 0 0 0 0 0 0 0 0 0 0 0 0 9974 2900 10381 49525;49526 49572;49573;49574 49572 3 FSYRENLEDEYEPR EQYQSKLESELRKLKFSYRENLEDEYEPRR KFSYRENLEDEYEPRRRDHISHFILRLAYC K F S P R R 0 2 1 1 0 0 4 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 14 1 1845.817 P49643 P49643 83 96 PRIM2 DNA primase large subunit yes yes 3 0.0087596 40.025 By MS/MS 1 0.69925 0.68892 NaN 1 Median 0.69925 0.68892 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5832100 3568400 2263700 5832100 3568400 2263700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9975 2389 10382 49527 49575 49575 1 FTADEAR RLFCRYIDRIHIFFRFTADEARDLIQRYLT DRIHIFFRFTADEARDLIQRYLTEHPDPNN R F T A R D 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 7 0 808.37153 Q6P2Q9 Q6P2Q9 1101 1107 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.073743 34.824 By MS/MS 1 0.91626 1.0207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91626 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 848700 433360 415330 0 0 0 0 0 0 848700 433360 415330 0 0 0 0 0 0 0 0 0 9976 3157 10383 49528 49576 49576 1 FTAFKEEYEGK NIGDLASILKVEKRRFTAFKEEYEGKETAL EKRRFTAFKEEYEGKETALLVDRYKFMDLY R F T G K E 1 0 0 0 0 0 3 1 0 0 0 2 0 2 0 0 1 0 1 0 0 0 11 1 1347.6347 Q12996;E9PLP8 Q12996 509 519 CSTF3 Cleavage stimulation factor subunit 3 yes no 2;3 5.1522E-05 116.52 By MS/MS By MS/MS 2 1 1.0898 1.1987 9.1294 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 1.1109 10.76 2 0 Median 1.241 1.2123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58729000 26715000 32014000 0 0 0 0 0 0 53382000 24419000 28963000 5347200 2295900 3051300 0 0 0 0 0 0 9977 2777 10384 49529;49530;49531 49577;49578;49579;49580 49580 4 FTAFYASR CTFALPSELERSYQRFTAFYASRHSGRKLT LERSYQRFTAFYASRHSGRKLTWLYQLSKG R F T S R H 2 1 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 1 0 0 0 8 0 961.46577 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 542 549 CUL1 Cullin-1 yes no 2 0.0059586 73.26 By MS/MS By MS/MS By MS/MS 1 1 1 1.1254 0.96947 14.463 3 Median 0.96039 0.92129 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1382 1.2094 NaN 1 0 Median 1.1254 0.96947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14921000 6616000 8305400 4703000 2097800 2605200 0 0 0 8947700 3873800 5074000 1270700 644380 626300 0 0 0 0 0 0 9978 256 10385 49532;49533;49534 49581;49582;49583 49581 3 FTAGAFSDHMALLR TQASQKRAAMLCRKRFTAGAFSDHMALLRA RFTAGAFSDHMALLRAFQAWQKARSDGWER R F T L R A 3 1 0 1 0 0 0 1 1 0 2 0 1 2 0 1 1 0 0 0 0 0 14 0 1535.7555 Q9H6S0 Q9H6S0 889 902 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 3 0.010968 25.178 By MS/MS 1 1.1575 1.1311 NaN 1 Median 1.1575 1.1311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3385100 1446800 1938300 3385100 1446800 1938300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9979 3977 10386 49535 49584 49584 1 FTAGDFSTTVIQNVNK GEVMREAAFSLAEAKFTAGDFSTTVIQNVN TAGDFSTTVIQNVNKAQVKIRAKKDNVAGV K F T N K A 1 0 2 1 0 1 0 1 0 1 0 1 0 2 0 1 3 0 0 2 0 0 16 0 1740.8683 G3V2S6;Q9Y5K8;H0YJS0;G3V559;H0YJ55 G3V2S6 19 34 ATP6V1D V-type proton ATPase subunit D yes no 2 6.6965E-07 94.616 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2117 1.1811 9.4153 4 Median 1.0938 0.99246 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2765 1.2214 NaN 1 0 Median 1.4738 1.1902 NaN 1 0 Median 1.1501 1.1721 NaN 1 0 Median NaN NaN NaN 0 0 Median 40658000 18624000 22035000 31338000 14654000 16684000 0 0 0 2831800 1200900 1630900 154870 58000 96865 6333500 2710700 3622800 0 0 0 9980 1108 10387 49536;49537;49538;49539 49585;49586;49587;49588;49589 49586 5 FTAIIGPNGSGK FKSYKGRQIIGPFQRFTAIIGPNGSGKSNL FQRFTAIIGPNGSGKSNLMDAISFVLGEKT R F T G K S 1 0 1 0 0 0 0 3 0 2 0 1 0 1 1 1 1 0 0 0 0 0 12 0 1160.619 Q14683 Q14683 27 38 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.4386E-08 140.17 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 0.77143 0.81732 88.571 6 Median NaN NaN NaN 0 0 Median 1.3099 1.1211 NaN 1 0 Median 0.74085 0.79404 NaN 1 1 Median 1.0285 0.93279 NaN 1 1 Median 0.80327 0.84127 NaN 1 0 Median 0.24252 0.21709 104.76 2 0 Median 29968000 16978000 12991000 0 0 0 1120200 595560 524660 7850500 4481000 3369500 1708800 724350 984410 16914000 9170400 7743400 2375200 2006400 368790 9981 2889 10388 49540;49541;49542;49543;49544;49545 49590;49591;49592;49593 49590 4 FTAPQAELYEAVLEIQR CYVSDITRTWPVNGRFTAPQAELYEAVLEI APQAELYEAVLEIQRDCLALCFPGTSLENI R F T Q R D 3 1 0 0 0 2 3 0 0 1 2 0 0 1 1 0 1 0 1 1 0 0 17 0 1977.0207 Q9NQH7 Q9NQH7 353 369 XPNPEP3 Probable Xaa-Pro aminopeptidase 3 yes yes 3 0.055864 9.6577 By MS/MS By matching 1 1 1.2102 1.105 39.062 2 Median 1.493 1.4565 NaN 1 0 Median 0.98101 0.83829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15656000 6843800 8812500 14844000 6527000 8316700 812640 316830 495800 0 0 0 0 0 0 0 0 0 0 0 0 9982 4063 10389 49546;49547 49594 49594 1 FTASAGIQVVGDDLTVTNPK IEDPFDQDDWGAWQKFTASAGIQVVGDDLT GIQVVGDDLTVTNPKRIAKAVNEKSCNCLL K F T P K R 2 0 1 2 0 1 0 2 0 1 1 1 0 1 1 1 3 0 0 3 0 0 20 0 2032.0477 P06733;A0A2R8Y6G6 P06733 307 326 ENO1 Alpha-enolase yes no 2;3 1.9963E-21 164.81 By MS/MS By MS/MS By MS/MS By matching 2 5 3 2 0.99606 0.90017 17.008 12 Median 0.77129 0.71971 36.188 2 0 Median 0.98766 0.84941 6.2501 5 0 Median 0.98569 0.94169 8.51 3 1 Median 1.1799 1.0524 4.0933 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138120000 68035000 70086000 20442000 10469000 9973300 40753000 20019000 20734000 76098000 37173000 38924000 828480 373790 454690 0 0 0 0 0 0 9983 1873 10390 49548;49549;49550;49551;49552;49553;49554;49555;49556;49557;49558;49559 49595;49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607;49608;49609;49610;49611;49612 49603 18 FTASAGIQVVGDDLTVTNPKR IEDPFDQDDWGAWQKFTASAGIQVVGDDLT IQVVGDDLTVTNPKRIAKAVNEKSCNCLLL K F T K R I 2 1 1 2 0 1 0 2 0 1 1 1 0 1 1 1 3 0 0 3 0 0 21 1 2188.1488 P06733;A0A2R8Y6G6 P06733 307 327 ENO1 Alpha-enolase yes no 2;3 2.3437E-13 87.18 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 1 1.1266 1.1426 28.639 7 Median 1.5691 1.5622 53.045 2 0 Median 1.2774 1.1674 NaN 1 0 Median 1.2255 1.2396 NaN 1 0 Median 1.1266 1.0896 NaN 1 0 Median 1.0999 1.1426 NaN 1 0 Median 1.0874 0.93763 NaN 1 0 Median 72647000 33868000 38779000 64142000 30205000 33937000 1956200 735460 1220800 3419400 1508000 1911400 766780 372760 394030 2274500 1009200 1265300 88506 37287 51219 9984 1873 10391 49560;49561;49562;49563;49564;49565;49566 49613;49614;49615;49616;49617;49618;49619 49617 7 FTASIQR KLRHSEREMRNTLEKFTASIQRLIEQEEYL EMRNTLEKFTASIQRLIEQEEYLNVQVKEL K F T Q R L 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 7 0 821.43955 Q9NTJ3;E9PD53 Q9NTJ3 821 827 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.018478 86.866 By MS/MS By MS/MS By matching 1 1 1 1.0024 0.85474 16.819 2 Median NaN NaN NaN 0 0 Median 1.1388 0.96269 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88238 0.7589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2793200 1334300 1458900 0 0 0 2566400 1195600 1370800 0 0 0 226850 138690 88161 0 0 0 0 0 0 9985 4108 10392 49567;49568;49569 49620;49621 49621 2 FTATASLGVIHK RDNLEWLARATNWAKFTATASLGVIHKGHE WAKFTATASLGVIHKGHEKEALQLMATYLP K F T H K G 2 0 0 0 0 0 0 1 1 1 1 1 0 1 0 1 2 0 0 1 0 0 12 0 1243.6925 A0A087WW66;Q99460 A0A087WW66 402 413 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2;3 0.00033447 63.283 By MS/MS By MS/MS By matching By matching 4 1 1 1 1.2069 1.1233 21.335 7 Median 1.2097 1.1595 8.272 4 1 Median 1.2292 1.042 NaN 1 0 Median 1.2069 1.2869 NaN 1 0 Median 0.67824 0.69456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66831000 31001000 35830000 55447000 25643000 29804000 8309800 3772000 4537800 2110000 1075100 1034900 964320 511270 453050 0 0 0 0 0 0 9986 54 10393 49570;49571;49572;49573;49574;49575;49576 49622;49623;49624;49625;49626;49627;49628 49625 7 FTDADKETEIVK EENFIDANDDEDMEKFTDADKETEIVKKLE MEKFTDADKETEIVKKLETEETVPETDVET K F T V K K 1 0 0 2 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1394.6929 Q03701 Q03701 647 658 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.0016447 81.338 By MS/MS By matching 1 1 0.84179 0.92649 2.5468 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79502 0.90995 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89131 0.94333 NaN 1 0 Median NaN NaN NaN 0 0 Median 5907300 3452300 2455000 0 0 0 0 0 0 3771400 2341900 1429500 0 0 0 2135800 1110300 1025500 0 0 0 9987 2710 10394 49577;49578 49629 49629 1 FTDEEVDELYR QEDYLRELLTTMGDRFTDEEVDELYREAPI MGDRFTDEEVDELYREAPIDKKGNFNYIEF R F T Y R E 0 1 0 2 0 0 3 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 11 0 1414.6252 J3QRS3;P19105;O14950 J3QRS3 139 149 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2 0.00011205 140.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0916 1.0382 7.2526 4 Linear 1.0824 1.0497 NaN 1 0 Median 1.1008 0.91326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93666 0.99118 NaN 1 0 Median 1.1476 0.89904 NaN 1 0 Median 26078000 12890000 13187000 12082000 5926600 6154900 3873500 1850800 2022700 0 0 0 0 0 0 8037000 4160300 3876700 2085900 952720 1133200 9988 1352 10395 49579;49580;49581;49582 49630;49631;49632;49633;49634;49635;49636 49635 7 FTDELMEQGLTYK WTLELSPELASMTTRFTDELMEQGLTYKVL TRFTDELMEQGLTYKVLTLVSQIDVNNEFE R F T Y K V 0 0 0 1 0 1 2 1 0 0 2 1 1 1 0 0 2 0 1 0 0 0 13 0 1573.7334 Q92621 Q92621 173 185 NUP205 Nuclear pore complex protein Nup205 yes yes 2 1.6984E-06 140.49 By MS/MS By MS/MS By matching 2 4 1 1.0559 1.1591 20.9 7 Median 1.2066 1.1527 44.154 2 0 Median NaN NaN NaN 0 0 Median 1.0555 1.1579 14.023 4 0 Median 1.2896 1.1676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79194000 37725000 41469000 5868800 2600800 3268000 0 0 0 71337000 34309000 37028000 1988100 815330 1172700 0 0 0 0 0 0 9989 3547 10396;10397 49583;49584;49585;49586;49587;49588;49589 49637;49638;49639;49640;49641;49642;49643 49639 1763 7 FTDEYQLFEELGK ______________________________ TRFTDEYQLFEELGKGAFSVVRRCMKIPTG R F T G K G 0 0 0 1 0 1 3 1 0 0 2 1 0 2 0 0 1 0 1 0 0 0 13 0 1617.7563 Q13557;E9PF82;E9PBG7;D6R938 Q13557 10 22 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 2 0.0011393 58.699 By MS/MS By matching 1 1 1.1266 1.0508 29.197 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86333 0.85476 NaN 1 0 Median 1.4702 1.2917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3693100 2407000 1286100 0 0 0 0 0 0 3364400 2292500 1071900 328660 114460 214200 0 0 0 0 0 0 9990 799 10398 49590;49591 49644 49644 1 FTDFDEVR SKTEHAEFLHCKSKKFTDFDEVRQEIEAET LHCKSKKFTDFDEVRQEIEAETDRVTGTNK K F T V R Q 0 1 0 2 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 8 0 1027.4611 P50570 P50570 91 98 DNM2 Dynamin-2 no no 2 0.0063783 71.501 By matching By MS/MS By matching 1 1 1 0.99252 1.042 18.694 3 Median NaN NaN NaN 0 0 Median 1.4117 1.2306 NaN 1 0 Median 0.97747 1.042 NaN 1 0 Median 0.99252 0.84734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8668600 4294200 4374400 0 0 0 1878500 671780 1206800 5866500 3166200 2700300 923560 456180 467380 0 0 0 0 0 0 9991 2417 10399 49592;49593;49594 49645;49646 49646 2 FTDILVR LKKRLQLPVWEYKDRFTDILVRHQSFVLVG PVWEYKDRFTDILVRHQSFVLVGETGSGKT R F T V R H 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 O43143 O43143 146 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0057448 95.793 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 4 1 1.1806 1.15 24.586 14 Median 1.0799 1.0572 36.168 4 0 Median 1.185 1.0244 10.248 3 0 Median 1.2168 1.292 6.8892 2 0 Median NaN NaN NaN 0 0 Median 1.2062 1.2322 24.884 4 0 Median 1.1763 1.0138 NaN 1 0 Median 89100000 40223000 48877000 21404000 9587500 11816000 14421000 6550600 7870100 13280000 5587100 7692900 0 0 0 36737000 16898000 19838000 3259500 1599500 1660000 9992 1553 10400 49595;49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607;49608 49647;49648;49649;49650;49651;49652;49653;49654;49655;49656 49648 10 FTDLFEK TLVKSTPVNVPISQKFTDLFEKMVPVSVQQ VNVPISQKFTDLFEKMVPVSVQQSLAAYNQ K F T E K M 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 7 0 898.44363 Q8WUM4 Q8WUM4 351 357 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.024295 55.676 By MS/MS By matching By matching 1 1 1 1.2571 1.2188 9.9041 3 Median 1.2571 1.2188 NaN 1 0 Median 1.2144 1.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5539 1.2969 NaN 1 0 Median 11274000 5004700 6269700 8589100 3709400 4879600 2075600 1021100 1054400 0 0 0 0 0 0 0 0 0 609780 274100 335680 9993 3493 10401 49609;49610;49611 49657 49657 1 FTDTRKDEQER CKAGIIASARAGETRFTDTRKDEQERCITI GETRFTDTRKDEQERCITIKSTAISLFYEL R F T E R C 0 2 0 2 0 1 2 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 11 2 1423.6692 P13639 P13639 56 66 EEF2 Elongation factor 2 yes yes 3 0.001526 47.559 By MS/MS By matching By matching 4 1 1 1.1691 1.1761 30.436 6 Median 1.1691 1.1761 12.238 4 0 Median 0.88496 0.81957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7253 2.0183 NaN 1 0 Median NaN NaN NaN 0 0 Median 3407800 1549000 1858800 3068100 1371100 1697000 227040 138050 88991 0 0 0 0 0 0 112660 39885 72774 0 0 0 9994 1992 10402 49612;49613;49614;49615;49616;49617 49658;49659;49660;49661 49659 4 FTDYQLR PKQEYWGSKRSSRTRFTDYQLRVLQDFFDA SKRSSRTRFTDYQLRVLQDFFDANAYPKDD R F T L R V 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 941.46068 Q15911;E7EVZ1;Q86UP3 Q15911 2249 2255 ZFHX3;ZFHX4 Zinc finger homeobox protein 3;Zinc finger homeobox protein 4 no no 2 0.051299 39.542 By matching By matching By MS/MS 1 1 1 1.3154 1.1433 28.01 3 Median 1.482 1.4761 NaN 1 0 Median 1.3154 1.1433 NaN 1 0 Median 0.77854 0.84357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12828000 6099700 6728100 3476600 1618200 1858400 5056000 2240800 2815200 4295200 2240600 2054500 0 0 0 0 0 0 0 0 0 9995 2977;898 10403 49618;49619;49620 49662 49662 1 FTEDLVGSVVHVLSHR ISATEGPVKAREVQKFTEDLVGSVVHVLSH TEDLVGSVVHVLSHRQELRGWTGKEAPGPN K F T H R Q 0 1 0 1 0 0 1 1 2 0 2 0 0 1 0 2 1 0 0 4 0 0 16 0 1793.9424 Q6P9B6;H3BM75;H3BUB0 Q6P9B6 129 144 TLDC1 TLD domain-containing protein 1 yes no 3 0.05106 20.048 By MS/MS 1 2.1971 2.2074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1971 2.2074 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3508300 956670 2551600 0 0 0 0 0 0 3508300 956670 2551600 0 0 0 0 0 0 0 0 0 9996 3165 10404 49621 49663 49663 1 FTEDSLLR KIETTVPPSGLNLNRFTEDSLLRHAQFVVE SGLNLNRFTEDSLLRHAQFVVEQVESYDEA R F T L R H 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 8 0 979.49746 P26358 P26358 545 552 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00061095 104.21 By MS/MS By MS/MS 4 4 1.0319 0.9981 12.778 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98834 1.0774 6.459 3 1 Median 1.0859 0.95125 15.837 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86828000 41627000 45201000 0 0 0 0 0 0 69161000 33436000 35726000 17666000 8191400 9475100 0 0 0 0 0 0 9997 2142 10405 49622;49623;49624;49625;49626;49627;49628;49629 49664;49665;49666;49667;49668;49669;49670;49671;49672;49673 49665 10 FTENDSEKVDR LRNLRGQQRTRLLNKFTENDSEKVDRLMEL LLNKFTENDSEKVDRLMELHFKYLGAMQVA K F T D R L 0 1 1 2 0 0 2 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 11 1 1338.6052 Q8WYA6;A0A087WUB9 Q8WYA6 430 440 CTNNBL1 Beta-catenin-like protein 1 yes no 2;3 3.9637E-05 120.06 By MS/MS 3 0.96656 1.0266 0.66829 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96656 1.0266 0.66829 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47144000 23452000 23692000 0 0 0 0 0 0 47144000 23452000 23692000 0 0 0 0 0 0 0 0 0 9998 28 10406 49630;49631;49632 49674;49675;49676;49677 49677 4 FTEYETQVK KDLKTGHSKGFGFVRFTEYETQVKVMSQRH GFGFVRFTEYETQVKVMSQRHMIDGRWCDC R F T V K V 0 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 2 0 1 1 0 0 9 0 1143.5448 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;A0A087WX29;K7EN94;A0A0A0N0M3;K7EJM5;A0A087WV68;A0A087WXQ5;A0A087WXV3;A0A087WX67;A0A087WW61 Q13148 152 160 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 0.00082669 95.741 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 4 5 1.2961 1.1059 26.258 20 Median 2.0515 1.9233 NaN 1 1 Median 1.104 0.93703 4.514 2 1 Median 1.1783 1.173 14.159 4 0 Median 1.266 1.0757 41.507 4 0 Median 1.1487 1.2455 18.81 4 1 Median 1.3645 1.1162 10.321 5 0 Median 321150000 148090000 173050000 6966800 2197700 4769100 7641200 3542000 4099300 141310000 68669000 72637000 88445000 37659000 50785000 50606000 24585000 26020000 26185000 11441000 14744000 9999 2789 10407 49633;49634;49635;49636;49637;49638;49639;49640;49641;49642;49643;49644;49645;49646;49647;49648;49649;49650;49651;49652 49678;49679;49680;49681;49682;49683;49684;49685;49686;49687;49688;49689;49690;49691;49692;49693;49694;49695;49696;49697;49698;49699;49700;49701;49702;49703;49704;49705 49694 28 FTEYSSLYK GEKPYVCTVPGCDKRFTEYSSLYKHHVVHT PGCDKRFTEYSSLYKHHVVHTHSKPYNCNH R F T Y K H 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 1 0 2 0 0 0 9 0 1136.539 E7EN86;P52747;E7EX64;P36508 E7EN86 370 378 ZNF143;ZNF76 Zinc finger protein 143;Zinc finger protein 76 yes no 2 0.0025948 70.919 By matching By MS/MS By matching By matching 1 1 3 1 1.2674 1.1682 16.542 6 Median 1.0545 0.97451 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.176 1.1994 NaN 1 0 Median 1.3659 1.1514 22.475 3 0 Median NaN NaN NaN 0 0 Median 1.4286 1.1852 NaN 1 0 Median 16050000 7288400 8761700 2570500 1233000 1337600 0 0 0 9758700 4373300 5385400 2596300 1203100 1393200 0 0 0 1124700 479120 645540 10000 861 10408 49653;49654;49655;49656;49657;49658 49706 49706 1 FTFYDGPPFATGLPHYGHILAGTIK NCFQECLKQSKHKPKFTFYDGPPFATGLPH TGLPHYGHILAGTIKDIVTRYAHQSGFHVD K F T I K D 2 0 0 1 0 0 0 4 2 2 2 1 0 3 3 0 3 0 2 0 0 0 25 0 2719.3799 P41252;A0A0A0MSX9;Q5TCD1 P41252 41 65 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.0095745 18.403 By MS/MS 1 0.6793 0.67105 NaN 1 Median 0.6793 0.67105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3342400 2061200 1281200 3342400 2061200 1281200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10001 2302 10409 49659 49707 49707 1 FTGEEVHGTSGSFR KLASGGDPTYAFNIRFTGEEVHGTSGSFRH RFTGEEVHGTSGSFRHFLWQVCKELQSSSL R F T F R H 0 1 0 0 0 0 2 3 1 0 0 0 0 2 0 2 2 0 0 1 0 0 14 0 1509.6848 F8VWT9;J3KPF0;Q9Y4D8 F8VWT9 3927 3940 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 yes no 3 0.063225 18.833 By MS/MS 1 0.478 0.53561 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.478 0.53561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 784060 492190 291870 0 0 0 0 0 0 784060 492190 291870 0 0 0 0 0 0 0 0 0 10002 1070 10410 49660 49708 49708 1 FTGLSKEELLK IKVAEDEAEAAAAAKFTGLSKEELLKVAGS AAAKFTGLSKEELLKVAGSPGWVRTRWALL K F T L K V 0 0 0 0 0 0 2 1 0 0 3 2 0 1 0 1 1 0 0 0 0 0 11 1 1263.7075 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2;F5H867;F5GZR9 F5GZS6 130 140 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.0018532 45.433 By MS/MS By matching 1 2 1.5863 1.3752 39.168 3 Median 1.6745 1.7251 NaN 1 0 Median 1.1487 1.0519 37.902 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10014000 3941700 6072600 5851800 2098000 3753800 4162400 1843600 2318800 0 0 0 0 0 0 0 0 0 0 0 0 10003 1016 10411 49661;49662;49663 49709 49709 1 FTGSEIR WTYAEDAVPTLTPCRFTGSEIRHRDDALPF VPTLTPCRFTGSEIRHRDDALPFAHVAIAV R F T I R H 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 7 0 808.40792 P31930;O75439;G3V0E4 P31930 270 276 UQCRC1;PMPCB Cytochrome b-c1 complex subunit 1, mitochondrial;Mitochondrial-processing peptidase subunit beta no no 2 0.00617 94.163 By MS/MS By MS/MS 1 2 1.6957 1.428 18.245 3 Median 1.0737 1.0708 NaN 1 0 Median 1.7268 1.4643 3.5482 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13166000 5528100 7637500 3489200 1690000 1799200 9676400 3838100 5838300 0 0 0 0 0 0 0 0 0 0 0 0 10004 2205;1673 10412 49664;49665;49666 49710;49711 49711 2 FTHAFSSDLMR FKQAAAAGIFLNNVKFTHAFSSDLMRTKQT NNVKFTHAFSSDLMRTKQTMHGILERSKFC K F T M R T 1 1 0 1 0 0 0 0 1 0 1 0 1 2 0 2 1 0 0 0 0 0 11 0 1310.6078 Q9NQ88 Q9NQ88 51 61 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 2;3 2.0131E-05 92.866 By MS/MS By MS/MS By MS/MS By matching By matching 5 2 1 1 1 1.2913 1.1487 64.358 8 Median 1.5063 1.407 22.963 3 0 Plateau 1.2011 1.0172 4.7109 2 0 Median 1.0973 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9512 1.8991 NaN 1 0 Median 8.1977 6.4619 NaN 1 0 Median 67405000 27758000 39647000 56746000 23478000 33268000 6183600 2850300 3333300 2474400 1033600 1440900 0 0 0 978910 312430 666480 1022500 84180 938330 10005 4061 10413 49667;49668;49669;49670;49671;49672;49673;49674;49675;49676 49712;49713;49714;49715;49716;49717;49718;49719;49720 49716 9 FTIENVTR SRAIGRIAGKGGKTKFTIENVTRTRIVLAD GKGGKTKFTIENVTRTRIVLADVKVHILGS K F T T R T 0 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 8 0 978.51345 Q9NRX1 Q9NRX1 192 199 PNO1 RNA-binding protein PNO1 yes yes 2 0.0041451 83.265 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1.0836 1.0066 10.614 7 Median 1.0362 0.96985 NaN 1 0 Median 1.27 1.0597 NaN 1 0 Median 1.045 1.0161 1.326 2 0 Median 1.1449 0.95752 NaN 1 0 Median 1.2716 1.2761 NaN 1 0 Median 1.0836 0.92536 NaN 1 0 Median 40844000 19159000 21685000 17813000 8862000 8951300 4391900 1726900 2665000 7788600 3497800 4290800 1319700 680390 639300 8411800 3858100 4553700 1118800 533820 585010 10006 4091 10414 49677;49678;49679;49680;49681;49682;49683 49721;49722;49723;49724;49725;49726;49727 49721 7 FTIEQIDLLQR VVLLETMSHYTDEPRFTIEQIDLLQRLRRT DEPRFTIEQIDLLQRLRRTGMTKHEILHAL R F T Q R L 0 1 0 1 0 2 1 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1374.7507 H0YLF2;E5RGZ2;H0YKJ1;Q6NT76;E5RHH9 H0YLF2 22 32 HMBOX1 Homeobox-containing protein 1 yes no 2 0.0055202 66.435 By MS/MS 1 0.83987 0.88624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83987 0.88624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1275200 673920 601270 0 0 0 0 0 0 1275200 673920 601270 0 0 0 0 0 0 0 0 0 10007 844 10415 49684 49728 49728 1 FTISDHPQPIDPLLK SGSSYARSSVVTAVKFTISDHPQPIDPLLK FTISDHPQPIDPLLKNCIGDFLKTLEDPDL K F T L K N 0 0 0 2 0 1 0 0 1 2 2 1 0 1 3 1 1 0 0 0 0 0 15 0 1719.9196 Q86VP6;A0A0C4DGH5 Q86VP6 991 1005 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 1.3519E-09 105.46 By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 0.79306 0.76467 30.719 7 Median 0.76089 0.73395 5.7986 2 2 Median 1.0268 0.8676 NaN 1 1 Median 0.69841 0.74549 14.955 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9316 1.6144 NaN 1 0 Median 106100000 62626000 43474000 37158000 22260000 14898000 14334000 7636500 6697000 54209000 32598000 21611000 0 0 0 0 0 0 400510 131470 269040 10008 3288 10416 49685;49686;49687;49688;49689;49690;49691 49729;49730;49731;49732;49733;49734 49733 6 FTITPPTAQVVGVLK QPKNFWNGRWRSEWKFTITPPTAQVVGVLK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS K F T L K I 1 0 0 0 0 1 0 1 0 1 1 1 0 1 2 0 3 0 0 3 0 0 15 0 1569.913 P52907 P52907 179 193 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2 3.4163E-06 90.05 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 0.88538 0.82765 7.0085 9 Median 0.88538 0.80168 3.1598 3 0 Plateau 1.0434 0.87709 3.5912 3 0 Plateau 0.84283 0.81073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84831 0.84239 NaN 1 0 Median 1.1422 0.95477 NaN 1 0 Median 99052000 52156000 46896000 74754000 39404000 35351000 10365000 5280000 5084700 8856500 4821200 4035300 0 0 0 3742800 2038500 1704200 1334000 612920 721070 10009 2461 10417 49692;49693;49694;49695;49696;49697;49698;49699;49700 49735;49736;49737;49738;49739;49740;49741;49742;49743;49744 49739 10 FTITPSTTQVVGILK QAKNFWNGRWRSEWKFTITPSTTQVVGILK FTITPSTTQVVGILKIQVHYYEDGNVQLVS K F T L K I 0 0 0 0 0 1 0 1 0 2 1 1 0 1 1 1 4 0 0 2 0 0 15 0 1603.9185 P47755 P47755 179 193 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 2 0.00011527 79.659 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.86103 0.80164 11.731 4 Median 0.90589 0.82062 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81838 0.78311 NaN 1 0 Median 0.97988 0.83329 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76982 0.64611 NaN 1 0 Median 61665000 32159000 29507000 55750000 28989000 26761000 0 0 0 3957500 2148000 1809400 1122200 534740 587470 0 0 0 835620 487100 348520 10010 2354 10418 49701;49702;49703;49704 49745;49746;49747;49748;49749 49745 5 FTLAGHTK TQSKPTPVKPNYALKFTLAGHTKAVSSVKF KPNYALKFTLAGHTKAVSSVKFSPNGEWLA K F T T K A 1 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 873.47085 P61964;V9GZ59;V9GYQ5 P61964 39 46 WDR5 WD repeat-containing protein 5 yes no 2 0.0072183 67.981 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.2002 1.1927 27.787 6 Median 1.4276 1.3913 56.627 2 0 Median NaN NaN NaN 0 0 Median 1.1314 1.1705 12.467 2 0 Median 1.3191 1.1128 NaN 1 0 Median 1.2582 1.3418 NaN 1 0 Median NaN NaN NaN 0 0 Median 8808800 3737200 5071600 1178100 471210 706880 0 0 0 4063800 1771700 2292000 1204600 494240 710330 2362400 1000100 1362300 0 0 0 10011 2564 10419 49705;49706;49707;49708;49709;49710 49750;49751;49752;49753;49754 49754 5 FTLLPPTSPGDTAPK LKFISGHTSELGDFRFTLLPPTSPGDTAPK FTLLPPTSPGDTAPKYGSYNVFWTSNPGLP R F T P K Y 1 0 0 1 0 0 0 1 0 0 2 1 0 1 4 1 3 0 0 0 0 0 15 0 1540.8137 Q13724;A0A3B3IRK6;A0A3B3IS52;A0A3B3ITC1;C9JDQ1 Q13724 242 256 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 2.67E-06 91.855 By MS/MS By matching 1 1 0.59756 0.54282 15.886 2 Median 0.52494 0.48514 NaN 1 0 Median 0.68024 0.60735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7844100 4944100 2900100 6656900 4325800 2331100 1187200 618310 568930 0 0 0 0 0 0 0 0 0 0 0 0 10012 2835 10420 49711;49712 49755;49756 49756 2 FTLNPNPTGVQNPHIER LKLNFANPPFKSTARFTLNPNPTGVQNPHI LNPNPTGVQNPHIERLRTHSIESSGKLKIS R F T E R L 0 1 3 0 0 1 1 1 1 1 1 0 0 1 3 0 2 0 0 1 0 0 17 0 1932.9806 P45985 P45985 59 75 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes yes 3 0.024561 26.146 By MS/MS 1 0.63506 0.63371 NaN 1 Median 0.63506 0.63371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14725000 8895100 5830100 14725000 8895100 5830100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10013 2334 10421 49713 49757 49757 1 FTLRDEGK TICLETFKDFPQMGRFTLRDEGKTIAIGKV DFPQMGRFTLRDEGKTIAIGKVLKLVPEKD R F T G K T 0 1 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 8 1 964.49779 P15170;H3BR35;Q8IYD1 P15170 477 484 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 2 0.027737 73.665 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1978 1.2317 35.203 4 Median 1.5491 1.5873 NaN 1 0 Median 1.132 1.1271 NaN 1 0 Median 1.2675 1.3461 NaN 1 0 Median 0.76609 0.70242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11033000 4605300 6427700 2826800 1136800 1690000 5043100 2205100 2837900 2894600 1137200 1757400 268420 126110 142310 0 0 0 0 0 0 10014 2016 10422 49714;49715;49716;49717 49758;49759;49760 49760 3 FTLSGGNWNTVSETAK SDTPEEILTRIGSGKFTLSGGNWNTVSETA TLSGGNWNTVSETAKDLVSKMLHVDPHQRL K F T A K D 1 0 2 0 0 0 1 2 0 0 1 1 0 1 0 2 3 1 0 1 0 0 16 0 1710.8213 E9PGT3;Q15418 E9PGT3 623 638 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 2 7.505E-05 67.456 By MS/MS 2 0.99334 0.93084 1.4992 2 Median 0.99334 0.93084 1.4992 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10671000 6097000 4573700 10671000 6097000 4573700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10015 926 10423 49718;49719 49761;49762 49761 2 FTLSHSQLR AQPETPVTLQFQGSKFTLSHSQLRQLTAGQ QFQGSKFTLSHSQLRQLTAGQPLQLQGSVL K F T L R Q 0 1 0 0 0 1 0 0 1 0 2 0 0 1 0 2 1 0 0 0 0 0 9 0 1087.5774 Q96L91 Q96L91 1635 1643 EP400 E1A-binding protein p400 yes yes 2 0.0054678 71.379 By MS/MS 1 1.041 1.16 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.041 1.16 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2026400 1074300 952120 0 0 0 0 0 0 2026400 1074300 952120 0 0 0 0 0 0 0 0 0 10016 3700 10424 49720 49763 49763 1 FTLWGLETIPGPDAK RDFDRFIGATANFSRFTLWGLETIPGPDAK FTLWGLETIPGPDAKVRGALTWPSLAAAVS R F T A K V 1 0 0 1 0 0 1 2 0 1 2 1 0 1 2 0 2 1 0 0 0 0 15 0 1643.8559 E9PN81;Q8TDP1 E9PN81 129 143 RNASEH2C Ribonuclease H2 subunit C yes no 2 0.00016426 76.655 By matching By matching By MS/MS 1 1 1 1.5911 1.263 38.464 3 Plateau 0.62705 0.59172 NaN 1 0 Median 0.88052 0.77234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5911 1.263 NaN 1 0 Median 2509200 1205900 1303300 234340 153650 80691 299140 162770 136370 0 0 0 0 0 0 0 0 0 1975700 889500 1086200 10017 972 10425 49721;49722;49723 49764;49765 49764 2 FTLWWSPTINR TNAQRSGLNQIPNRRFTLWWSPTINRANVY PNRRFTLWWSPTINRANVYVGFQVQLDLTG R F T N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 2 2 0 0 0 0 11 0 1419.7299 Q6P2Q9;I3L3Z8 Q6P2Q9 1534 1544 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00065676 65.224 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.0692 0.9531 8.3317 7 Median 1.0692 1.0036 NaN 1 0 Median 1.1223 0.95903 NaN 1 0 Median 0.83295 0.90906 NaN 1 0 Median 1.2212 1.072 NaN 1 0 Median 0.82967 0.87479 9.1972 2 0 Median 1.1526 0.9531 NaN 1 0 Median 33479000 16313000 17165000 11209000 5231600 5977000 5645300 2371600 3273700 11082000 5928400 5153700 1477800 648050 829750 3687100 1962200 1724900 377590 171290 206290 10018 3157 10426 49724;49725;49726;49727;49728;49729;49730 49766;49767;49768;49769;49770;49771;49772;49773;49774 49771 9 FTMELAK PKNYTDNELEKITRRFTMELAKKGFIGPGI ELEKITRRFTMELAKKGFIGPGIDVPAPDM R F T A K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 7 0 838.42588 P00367;P49448 P00367 205 211 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.021555 58.981 By MS/MS By MS/MS 1 1 1.2396 1.1045 18.757 2 Median 1.0373 0.96729 NaN 1 0 Median 1.4814 1.2611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13918000 6036700 7881000 9073900 4120400 4953500 4843800 1916300 2927400 0 0 0 0 0 0 0 0 0 0 0 0 10019 1814 10427 49731;49732 49775;49776 49775 2 FTMVQVWPVR SDVVLELEFEGVKEKFTMVQVWPVRQVRPV GVKEKFTMVQVWPVRQVRPVTEKLPANHPL K F T V R Q 0 1 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 3 0 0 10 0 1261.6641 P38606;C9JA17;C9JVW8 P38606 203 212 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2 0.00034494 89.298 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.99339 1.0399 16.885 5 Median 1.0976 1.0509 19.641 2 0 Median 1.2101 1.0472 NaN 1 1 Median 0.99339 1.0399 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76633 0.77042 NaN 1 0 Median NaN NaN NaN 0 0 Median 20877000 10185000 10692000 9546400 4739600 4806800 5463600 2578400 2885200 5228600 2546600 2681900 0 0 0 638070 320240 317830 0 0 0 10020 2276 10428 49733;49734;49735;49736;49737 49777;49778;49779;49780;49781 49778 5 FTNAVVLQQHIR PPLRVQHSCPICQKKFTNAVVLQQHIRMHM QKKFTNAVVLQQHIRMHMGGQIPNTPLPEG K F T I R M 1 1 1 0 0 2 0 0 1 1 1 0 0 1 0 0 1 0 0 2 0 0 12 0 1424.7888 A0A140TA74;A0A140TA70;Q9BXA9;A9JR48;A0A087WXW6;H3BSM9;Q9NSC2 A0A140TA74 744 755 SALL3;SALL1 Sal-like protein 3;Sal-like protein 1 yes no 3 0.0038885 52.247 By MS/MS 1 0.80273 0.88281 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80273 0.88281 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7728700 4101300 3627300 0 0 0 0 0 0 7728700 4101300 3627300 0 0 0 0 0 0 0 0 0 10021 315 10429 49738 49782 49782 1 FTNKEWETIR GRGSIPEFFHIMKRKFTNKEWETIRSFKDE IMKRKFTNKEWETIRSFKDEWTQLDMFYRN K F T I R S 0 1 1 0 0 0 2 0 0 1 0 1 0 1 0 0 2 1 0 0 0 0 10 1 1322.6619 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 152 161 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 2 0.019123 54.608 By MS/MS 1 1.0445 1.0538 NaN 1 Median 1.0445 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20617000 9879300 10738000 20617000 9879300 10738000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10022 4085 10430 49739 49783 49783 1 FTNMLGQPGSTALDLFK SSWMELYPTISSDIRFTNMLGQPGSTALDL NMLGQPGSTALDLFKFYVEDLKARYHDEKK R F T F K F 1 0 1 1 0 1 0 2 0 0 3 1 1 2 1 1 2 0 0 0 0 0 17 0 1838.9237 O75400;A0A3F2YNY6 O75400 646 662 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 2.2038E-05 72.29 By matching By matching By MS/MS By matching By matching 1 1 3 1 1 1.0147 1.0506 17.92 6 Median 1.0834 1.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88388 0.942 20.745 3 0 Median NaN NaN NaN 0 0 Median 1.0846 1.1319 NaN 1 0 Median 1.2624 1.0655 NaN 1 0 Median 37630000 18827000 18803000 1561600 690450 871160 78823 22571 56252 34819000 17541000 17278000 0 0 0 941850 482420 459430 228070 90389 137690 10023 1670 10431 49740;49741;49742;49743;49744;49745;49746 49784;49785;49786;49787;49788 49786 5 FTNMMMIGGNK AGKTSSVFEDPVISKFTNMMMIGGNKVLAR VISKFTNMMMIGGNKVLARSLMIQTLEAVK K F T N K V 0 0 2 0 0 0 0 2 0 1 0 1 3 1 0 0 1 0 0 0 0 0 11 0 1242.5559 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 J3QLS3 123 133 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 0.00014063 87.639 By MS/MS By matching 1 1 1.3196 1.2814 50.291 2 Median 0.9699 0.89793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7955 1.8286 NaN 1 0 Median NaN NaN NaN 0 0 Median 27759000 13852000 13907000 25661000 12993000 12668000 0 0 0 0 0 0 0 0 0 2097600 859090 1238500 0 0 0 10024 1341 10432 49747;49748 49789 49789 1 FTPDIPTMLYHGTQEER GPLSTLPNWMAEFKRFTPDIPTMLYHGTQE PDIPTMLYHGTQEERQKLVRNIYKRKGTLQ R F T E R Q 0 1 0 1 0 1 2 1 1 1 1 0 1 1 2 0 3 0 1 0 0 0 17 0 2033.9517 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 169 185 HELLS Lymphoid-specific helicase yes no 3 0.0001575 40.515 By MS/MS By matching 1 1 0.76193 0.72241 10.055 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72837 0.77564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79704 0.67283 NaN 1 0 Median 6846700 3904800 2941900 0 0 0 0 0 0 6651900 3795200 2856700 0 0 0 0 0 0 194780 109550 85229 10025 211 10433 49749;49750 49790;49791;49792;49793 49791 4 FTPELQPK HASQIQKVEPAGRSRFTPELQPKASQSRKR EPAGRSRFTPELQPKASQSRKRSLATMDSP R F T P K A 0 0 0 0 0 1 1 0 0 0 1 1 0 1 2 0 1 0 0 0 0 0 8 0 958.51238 Q14676 Q14676 1799 1806 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0069332 69.176 By MS/MS By MS/MS By MS/MS 1 1 1 0.77947 0.75084 20.251 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77947 0.86198 NaN 1 0 Median 0.82634 0.75084 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67534 0.57851 NaN 1 0 Median 16479000 8633400 7845400 0 0 0 0 0 0 9571400 5038700 4532700 1438800 724170 714580 0 0 0 5468700 2870600 2598100 10026 2887 10434 49751;49752;49753 49794;49795;49796;49797 49794 4 FTPGAVMLR KHPKEPREPGAALLKFTPGAVMLRVGISKK GAALLKFTPGAVMLRVGISKKLAGSELFAK K F T L R V 1 1 0 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 0 1 0 0 9 0 990.53207 Q5T200 Q5T200 1521 1529 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2 0.00054754 105.39 By MS/MS By MS/MS By matching 1 1 1 0.84037 0.91789 11.255 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84037 0.91789 NaN 1 1 Median 0.96582 0.85163 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78806 0.73567 NaN 1 0 Median 11709000 6453700 5255300 0 0 0 0 0 0 10324000 5740000 4583500 1033500 511360 522090 0 0 0 351980 202320 149660 10027 3082 10435 49754;49755;49756 49798;49799 49798 2 FTPGTFTNQIQAAFR LKFAAATGATPIAGRFTPGTFTNQIQAAFR FTPGTFTNQIQAAFREPRLLVVTDPRADHQ R F T F R E 2 1 1 0 0 2 0 1 0 1 0 0 0 3 1 0 3 0 0 0 0 0 15 0 1697.8526 C9J9K3;A0A0C4DG17;P08865 C9J9K3 103 117 RPSA 40S ribosomal protein SA yes no 2 1.5145E-58 221.52 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.99398 0.96537 10.764 7 Median 0.98585 0.96254 1.3035 2 0 Median 0.99956 0.84982 5.1645 2 0 Median 1.0281 1.0574 12.876 2 0 Median NaN NaN NaN 0 0 Median 0.93236 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median 290840000 143520000 147320000 145720000 72388000 73332000 102470000 50321000 52150000 40041000 19471000 20570000 0 0 0 2605400 1335300 1270100 0 0 0 10028 232 10436 49757;49758;49759;49760;49761;49762;49763 49800;49801;49802;49803;49804;49805;49806;49807;49808;49809;49810;49811;49812;49813;49814;49815 49811 16 FTPGTFTNQIQAAFREPR LKFAAATGATPIAGRFTPGTFTNQIQAAFR GTFTNQIQAAFREPRLLVVTDPRADHQPLT R F T P R L 2 2 1 0 0 2 1 1 0 1 0 0 0 3 2 0 3 0 0 0 0 0 18 1 2080.049 C9J9K3;A0A0C4DG17;P08865 C9J9K3 103 120 RPSA 40S ribosomal protein SA yes no 3 2.213E-19 170.09 By MS/MS By MS/MS By matching By MS/MS By matching 4 1 1 1 1 0.94304 0.89398 83.611 8 Median 0.83124 0.88469 114.38 4 0 Median 0.96153 0.88504 NaN 1 0 Median 1.4102 1.4454 NaN 1 0 Median 0.9249 0.81417 NaN 1 0 Median 1.0245 1.0935 NaN 1 0 Median NaN NaN NaN 0 0 Median 173760000 92290000 81467000 134870000 73169000 61705000 11259000 5361100 5898400 1680000 720180 959850 18077000 9234300 8842700 7866000 3804800 4061300 0 0 0 10029 232 10437 49764;49765;49766;49767;49768;49769;49770;49771 49816;49817;49818;49819;49820;49821;49822 49818 7 FTPPIYQPK VTQSAAIVPVRTKKRFTPPIYQPKFKTEKE VRTKKRFTPPIYQPKFKTEKEFMQHARKAG R F T P K F 0 0 0 0 0 1 0 0 0 1 0 1 0 1 3 0 1 0 1 0 0 0 9 0 1089.5859 A0A0G2JMS5;A0A087WU62;A0A087X2D5;Q9BRJ2 A0A0G2JMS5 41 49 MRPL45 39S ribosomal protein L45, mitochondrial yes no 2 0.011758 46.994 By MS/MS By matching By MS/MS 1 1 1 0.95669 0.80335 15.396 3 Median 0.68738 0.62391 NaN 1 0 Median 0.95669 0.80335 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98144 0.82443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39949000 23385000 16564000 27546000 17094000 10452000 6197700 3122900 3074800 0 0 0 6205600 3168800 3036800 0 0 0 0 0 0 10030 25 10438 49772;49773;49774 49823;49824;49825;49826 49823 4 FTPVDESVTFIGR DWQSMYQSTHIPIPKFTPVDESVTFIGRLC PKFTPVDESVTFIGRLCREILRITDPKMTC K F T G R L 0 1 0 1 0 0 1 1 0 1 0 0 0 2 1 1 2 0 0 2 0 0 13 0 1466.7405 Q12768;E7EQI7 Q12768 811 823 KIAA0196 WASH complex subunit strumpellin yes no 2 0.014235 50.284 By MS/MS 1 2.3694 2.2831 NaN 1 Median 2.3694 2.2831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10761000 2280100 8480800 10761000 2280100 8480800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10031 878 10439 49775 49827 49827 1 FTQAGSEVSALLGR QEGQDVLLFIDNIFRFTQAGSEVSALLGRI RFTQAGSEVSALLGRIPSAVGYQPTLATDM R F T G R I 2 1 0 0 0 1 1 2 0 0 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1434.7467 P06576;H0YH81;F8W0P7 P06576 311 324 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 1.213E-08 158.41 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 1 2 3 1.321 1.1984 42.002 16 Median 1.117 1.0237 8.1982 5 0 Median 1.5058 1.2888 59.436 5 0 Median 1.2227 1.192 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5853 1.6308 16.894 2 0 Median 1.2629 1.0883 34.95 3 0 Median 484270000 214960000 269320000 208360000 97495000 110860000 216910000 92263000 124640000 32606000 14176000 18430000 0 0 0 20648000 8520100 12128000 5756600 2505600 3251100 10032 1872 10440 49776;49777;49778;49779;49780;49781;49782;49783;49784;49785;49786;49787;49788;49789;49790;49791 49828;49829;49830;49831;49832;49833;49834;49835;49836;49837;49838;49839;49840;49841;49842;49843 49834 16 FTQDTQPHYIYSPR LTAAMVEFYTMSQERFTQDTQPHYIYSPRE RFTQDTQPHYIYSPREMTRWVRGIFEALRP R F T P R E 0 1 0 1 0 2 0 0 1 1 0 0 0 1 2 1 2 0 2 0 0 0 14 0 1751.8267 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2784 2797 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 3.9466E-32 206.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 2 0.78653 0.73978 23.801 15 Median 0.76577 0.73978 3.5808 3 0 Median 0.8946 0.70816 11.651 3 0 Plateau 0.73442 0.75928 2.8318 3 0 Plateau 0.89794 0.78362 3.5453 3 0 Plateau 0.75484 0.77639 NaN 1 0 Median 1.35 1.1187 61.288 2 0 Median 583550000 319940000 263610000 145650000 80528000 65119000 167670000 89147000 78526000 212170000 119810000 92359000 34803000 18194000 16609000 9994400 5585600 4408800 13262000 6673700 6588300 10033 2865 10441 49792;49793;49794;49795;49796;49797;49798;49799;49800;49801;49802;49803;49804;49805;49806 49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860;49861;49862;49863;49864;49865;49866;49867;49868;49869;49870;49871;49872;49873;49874;49875;49876;49877 49865 34 FTQISPVWLQLK WNSHGYDVTKVFGSKFTQISPVWLQLKRRG GSKFTQISPVWLQLKRRGREMFEVTGLHDV K F T L K R 0 0 0 0 0 2 0 0 0 1 2 1 0 1 1 1 1 1 0 1 0 0 12 0 1458.8235 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0 Q9BWS9 103 114 CHID1 Chitinase domain-containing protein 1 yes no 2 0.00060419 70.056 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.93133 0.91535 23.235 4 Median 0.94673 0.88473 NaN 1 0 Median 1.6468 1.4179 NaN 1 0 Median 0.91617 0.94702 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87198 0.86149 NaN 1 0 Median NaN NaN NaN 0 0 Median 19892000 9877200 10014000 6755200 3308800 3446300 1768900 605060 1163900 10577000 5529700 5046800 0 0 0 791020 433590 357430 0 0 0 10034 3874 10442 49807;49808;49809;49810;49811 49878;49879;49880;49881;49882 49881 5 FTQLDLEDVQVR KLNKITKFIEENKEKFTQLDLEDVQVREKL KEKFTQLDLEDVQVREKLKHATSKAKKLEK K F T V R E 0 1 0 2 0 2 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1461.7464 Q9NTJ3;E9PD53;C9JR83 Q9NTJ3 390 401 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 8.4481E-05 155.42 By MS/MS By MS/MS By MS/MS 1 1 1 1.0879 1.0208 9.0026 3 Median 1.0879 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0585 1.1639 NaN 1 0 Median 1.1144 0.97959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44789000 21191000 23599000 29462000 14036000 15426000 0 0 0 12243000 5759400 6483400 3084900 1395500 1689400 0 0 0 0 0 0 10035 4108 10443 49812;49813;49814 49883;49884;49885;49886;49887;49888 49883 6 FTQNLSAFR MEGIERNLLTKNRDRFTQNLSAFRREVNDS TKNRDRFTQNLSAFRREVNDSMKNSTYGVN R F T F R R 1 1 1 0 0 1 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 9 0 1082.5509 E7ESC6;Q9UIA9 E7ESC6 1059 1067 XPO7 Exportin-7 yes no 2 0.010372 48.283 By MS/MS By matching 1 1 1.6011 1.3594 32.273 2 Median NaN NaN NaN 0 0 Median 1.281 1.0821 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0013 1.7079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5775100 2409900 3365200 0 0 0 4793400 1942300 2851100 0 0 0 981730 467570 514160 0 0 0 0 0 0 10036 885 10444 49815;49816 49889 49889 1 FTQQDIDEAK LQSFGKAVDWAKSGKFTQQDIDEAKLSVFS AKSGKFTQQDIDEAKLSVFSTVDAPVAPSD K F T A K L 1 0 0 2 0 2 1 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 10 0 1193.5564 Q5JRX3;A0A0A0MRX9;B1APQ0 Q5JRX3 947 956 PITRM1 Presequence protease, mitochondrial yes no 2 0.0012373 105.4 By MS/MS By MS/MS By MS/MS 1 1 1 1.5207 1.2722 21.731 3 Median 0.88983 0.8819 NaN 1 0 Median 1.531 1.2968 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5207 1.2722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13046000 4763500 8282800 2687600 1289100 1398600 9464200 3171600 6292600 0 0 0 894380 302820 591560 0 0 0 0 0 0 10037 3050 10445 49817;49818;49819 49890;49891;49892;49893 49892 4 FTQTSGETTDADKEPAGEDK RVQKVQVKEEPSAVKFTQTSGETTDADKEP GETTDADKEPAGEDKGIKALKESAKQTPAP K F T D K G 2 0 0 3 0 1 3 2 0 0 0 2 0 1 1 1 4 0 0 0 0 0 20 1 2125.9288 P46013 P46013 2742 2761 MKI67 Antigen KI-67 yes yes 3 1.7165E-07 56.9 By MS/MS By MS/MS By MS/MS By matching 3 5 2 2 0.87028 0.95007 23.428 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90825 1.0506 5.7458 3 0 Median 1.0329 0.98387 31.562 5 0 Median 0.85191 0.9284 3.1035 2 0 Median 0.81399 0.7335 2.9499 2 0 Median 33445000 16468000 16977000 0 0 0 0 0 0 18967000 9775400 9191600 8760500 4049600 4711000 4552700 2048300 2504500 1164800 595080 569700 10038 2335 10446 49820;49821;49822;49823;49824;49825;49826;49827;49828;49829;49830;49831 49894;49895;49896;49897;49898;49899;49900;49901;49902;49903;49904 49896 11 FTQTSGETTDADKEPAGEDKGIK RVQKVQVKEEPSAVKFTQTSGETTDADKEP TDADKEPAGEDKGIKALKESAKQTPAPAAS K F T I K A 2 0 0 3 0 1 3 3 0 1 0 3 0 1 1 1 4 0 0 0 0 0 23 2 2424.1292 P46013 P46013 2742 2764 MKI67 Antigen KI-67 yes yes 4 0.010718 19.549 By MS/MS 2 0.93862 1.1257 24.837 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93862 1.1257 24.837 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6608400 3166200 3442300 0 0 0 0 0 0 6608400 3166200 3442300 0 0 0 0 0 0 0 0 0 10039 2335 10447 49832;49833 49905;49906 49906 2 FTQVLEDDEK RNLPDPGKAQDFMKKFTQVLEDDEKIRKQL DFMKKFTQVLEDDEKIRKQLEVLVSPTCSC K F T E K I 0 0 0 2 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1222.5717 Q9NTI5 Q9NTI5 549 558 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00083354 70.908 By matching By MS/MS 1 1 1.083 1.0987 4.3861 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99361 1.1333 NaN 1 0 Median 1.1805 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5205300 2507200 2698100 0 0 0 0 0 0 1101700 703360 398320 4103600 1803900 2299700 0 0 0 0 0 0 10040 4107 10448 49834;49835 49907 49907 1 FTQVLEDDEKIR RNLPDPGKAQDFMKKFTQVLEDDEKIRKQL MKKFTQVLEDDEKIRKQLEVLVSPTCSCKQ K F T I R K 0 1 0 2 0 1 2 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 12 1 1491.7569 Q9NTI5 Q9NTI5 549 560 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 1.9972E-06 117.98 By MS/MS By matching 2 1 1.0335 0.98921 16.086 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88018 0.99704 22.74 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1267 0.98921 NaN 1 0 Median 13104000 6913200 6190700 0 0 0 0 0 0 12435000 6562200 5872900 0 0 0 0 0 0 668840 350980 317860 10041 4107 10449 49836;49837;49838 49908;49909;49910 49908 3 FTQVLEDDEKIRK RNLPDPGKAQDFMKKFTQVLEDDEKIRKQL KKFTQVLEDDEKIRKQLEVLVSPTCSCKQA K F T R K Q 0 1 0 2 0 1 2 0 0 1 1 2 0 1 0 0 1 0 0 1 0 0 13 2 1619.8519 Q9NTI5 Q9NTI5 549 561 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3;4 0.00028384 71.548 By MS/MS 2 0.72682 0.82819 17.394 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72682 0.82819 17.394 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9702900 5651700 4051100 0 0 0 0 0 0 9702900 5651700 4051100 0 0 0 0 0 0 0 0 0 10042 4107 10450 49839;49840 49911;49912;49913 49912 3 FTRNEFNLESK LIGDSGVGKSNLLSRFTRNEFNLESKSTIG LLSRFTRNEFNLESKSTIGVEFATRSIQVD R F T S K S 0 1 2 0 0 0 2 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 11 1 1383.6783 H3BSC1;P62491;H3BMH2;Q15907 Q15907 31 41 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 3 0.0036985 55.98 By MS/MS By MS/MS 1 1 0.9998 0.98414 11.373 2 Median 1.0192 1.0666 NaN 1 1 Median 0.98081 0.9081 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14872000 7526400 7345200 7357000 3223300 4133600 7514700 4303100 3211600 0 0 0 0 0 0 0 0 0 0 0 0 10043 1233;2976 10451 49841;49842 49914;49915 49915 2 FTRPLFK IPLALKMATEQGRMKFTRPLFKDLAAFDKS ATEQGRMKFTRPLFKDLAAFDKSHDQAVRT K F T F K D 0 1 0 0 0 0 0 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 7 1 907.52797 P09960 P09960 567 573 LTA4H Leukotriene A-4 hydrolase yes yes 1;2 0.063743 76.035 By MS/MS By matching 2 1 0.93682 0.94991 12.225 3 Median 0.9421 0.95024 0.050284 2 0 Median 0.84076 0.76891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21104000 11167000 9937000 15940000 8360400 7579200 5164900 2807100 2357900 0 0 0 0 0 0 0 0 0 0 0 0 10044 1924 10452 49843;49844;49845 49916;49917 49917 1 FTRPLTMAELSR PGDLLTLPGTTEHLRFTRPLTMAELSRLRR HLRFTRPLTMAELSRLRRQFISYTKMHPNN R F T S R L 1 2 0 0 0 0 1 0 0 0 2 0 1 1 1 1 2 0 0 0 0 0 12 1 1420.7497 A0A3B3IU88;Q96EK9 A0A3B3IU88 172 183 KTI12 Protein KTI12 homolog yes no 3 0.00031907 58.32 By MS/MS By matching By matching 1 1 1 1.1184 1.1346 27.452 3 Median 1.1184 1.1768 NaN 1 0 Median 1.2149 1.1346 NaN 1 0 Median 0.70149 0.71898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9007800 5059800 3948000 4122800 1929000 2193800 88764 44568 44196 4796300 3086200 1710100 0 0 0 0 0 0 0 0 0 10045 442 10453 49846;49847;49848 49918 49918 1 FTSDMSNTEWGYR KWKDFELPGDTLYYRFTSDMSNTEWGYRFT YRFTSDMSNTEWGYRFTVTAGHLGRFQTGF R F T Y R F 0 1 1 1 0 0 1 1 0 0 0 0 1 1 0 2 2 1 1 0 0 0 13 0 1592.6566 O43149 O43149 2779 2791 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 2 3.8838E-07 109.42 By MS/MS By matching 1 1 1.1487 1.0688 24.581 2 Median 1.2577 1.2716 NaN 1 0 Median 1.049 0.89824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4008800 1838400 2170400 3114200 1417600 1696500 894600 420750 473850 0 0 0 0 0 0 0 0 0 0 0 0 10046 1555 10454 49849;49850 49919 49919 1 FTSDTKPIINK KLENDGSRKPGVIDKFTSDTKPIINKVASV VIDKFTSDTKPIINKVASVAENKGLFEEAA K F T N K V 0 0 1 1 0 0 0 0 0 2 0 2 0 1 1 1 2 0 0 0 0 0 11 1 1262.6871 Q8N1F7;H3BVG0 Q8N1F7 601 611 NUP93 Nuclear pore complex protein Nup93 yes no 2;3 0.00093715 74.92 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.0609 1.053 19.615 5 Median NaN NaN NaN 0 0 Median 0.77604 0.75062 NaN 1 0 Median 0.92178 1.053 NaN 1 0 Median 1.125 1.099 8.2936 2 0 Median NaN NaN NaN 0 0 Median 1.4654 1.2523 NaN 1 0 Median 16853000 8033300 8819800 0 0 0 2290200 1109500 1180600 7345900 3514200 3831800 6777500 3233800 3543800 0 0 0 439420 175750 263660 10047 3356 10455 49851;49852;49853;49854;49855 49920;49921;49922;49923;49924 49924 5 FTSLRPLLGGIPESGGPDAR ASFILAFGTGVEFVRFTSLRPLLGGIPESG PLLGGIPESGGPDARQGWLAALQDRSILAP R F T A R Q 1 2 0 1 0 0 1 4 0 1 3 0 0 1 3 2 1 0 0 0 0 0 20 1 2039.08 Q8IXM6 Q8IXM6 28 47 NRM Nurim yes yes 3 0.00050842 30.094 By MS/MS By MS/MS By matching 1 1 1 0.69227 0.59293 19.786 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51057 0.52938 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69227 0.778 NaN 1 0 Median 0.70045 0.59293 NaN 1 0 Median 9132700 5506300 3626400 0 0 0 0 0 0 4225800 2836700 1389100 0 0 0 4756900 2597000 2159900 149990 72598 77388 10048 3335 10456 49856;49857;49858 49925;49926 49926 2 FTTGDAMSK IQQCTDDVRLFAFVRFTTGDAMSKRSKFAL LFAFVRFTTGDAMSKRSKFALITWIGENVS R F T S K R 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 9 0 956.42733 Q14019 Q14019 64 72 COTL1 Coactosin-like protein yes yes 2 0.012407 46.39 By MS/MS By MS/MS By matching 1 1 2 1.2435 1.1899 21.61 4 Median 1.1096 1.0222 NaN 1 0 Median 1.1896 0.9883 NaN 1 0 Median 1.3999 1.4516 6.6358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7640600 3675900 3964700 3138500 1487900 1650600 3196900 1592000 1604900 1305200 596010 709190 0 0 0 0 0 0 0 0 0 10049 2853 10457 49859;49860;49861;49862 49927;49928;49929 49927 3 FTTGDAMSKR IQQCTDDVRLFAFVRFTTGDAMSKRSKFAL FAFVRFTTGDAMSKRSKFALITWIGENVSG R F T K R S 1 1 0 1 0 0 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 10 1 1112.5284 Q14019 Q14019 64 73 COTL1 Coactosin-like protein yes yes 2 0.00081407 73.233 By MS/MS By MS/MS 1 1 1.1239 1.0457 9.1243 2 Median 1.1375 1.1154 NaN 1 0 Median 1.1104 0.9804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5229300 2301000 2928300 2917100 1347100 1570000 2312200 953880 1358400 0 0 0 0 0 0 0 0 0 0 0 0 10050 2853 10458 49863;49864 49930;49931;49932 49932 3 FTTYEIR IDVSNPQTVGVGRGRFTTYEIRVKTNLPIF TVGVGRGRFTTYEIRVKTNLPIFKLKESTV R F T I R V 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 2 0 1 0 0 0 7 0 928.46543 O60493 O60493 46 52 SNX3 Sorting nexin-3 yes yes 2 0.0055578 96.51 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 1.1094 1.0001 15.199 6 Median 1.0371 1.0019 14.569 3 0 Median 1.0785 0.89391 NaN 1 0 Median 1.3074 1.2527 NaN 1 1 Median 1.1411 0.94004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44038000 19663000 24375000 26838000 12324000 14514000 11633000 5054100 6578500 4953400 2008600 2944800 614390 276930 337460 0 0 0 0 0 0 10051 1616 10459 49865;49866;49867;49868;49869;49870 49933;49934;49935 49933 3 FTTYEVR IDIFNPQTVGVGRARFTTYEVRMRTNLPIF TVGVGRARFTTYEVRMRTNLPIFKLKESCV R F T V R M 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 7 0 914.44978 A0A087X0R6;Q9UMY4 A0A087X0R6 47 53 SNX12 Sorting nexin-12 yes no 2 0.02008 60.76 By matching By MS/MS 1 1 1.3113 1.189 3.3411 2 Median 1.1712 1.1613 NaN 1 0 Median 1.4682 1.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11390000 5033400 6356900 4698900 2162900 2536000 6691500 2870500 3820900 0 0 0 0 0 0 0 0 0 0 0 0 10052 112 10460 49871;49872 49936 49936 1 FTVAELK EAPKLSKKKLRRMNRFTVAELKQLVARPDV KKLRRMNRFTVAELKQLVARPDVVEMHDVT R F T L K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 806.4538 Q13435;E9PPJ0 Q13435 460 466 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.016334 68.915 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 2 2 1.2664 1.1934 11.154 12 Median 1.2012 1.1871 NaN 1 0 Median 1.4403 1.242 2.8855 3 0 Median 1.055 1.1109 15.365 2 0 Median 1.3682 1.1702 11.675 3 0 Median 1.072 1.1063 13.82 2 0 Median 1.1638 0.96327 NaN 1 0 Median 53937000 25078000 28859000 3289600 1483400 1806200 5845400 2649800 3195600 11781000 5289800 6491100 4413100 1878400 2534700 27284000 13175000 14109000 1323800 601660 722110 10053 2817 10461 49873;49874;49875;49876;49877;49878;49879;49880;49881;49882;49883;49884;49885 49937;49938;49939;49940;49941;49942;49943;49944;49945;49946 49940 10 FTVDEKNYTK EKGDMVTLPAGIYHRFTVDEKNYTKAMRLF GIYHRFTVDEKNYTKAMRLFVGEPVWTAYN R F T T K A 0 0 1 1 0 0 1 0 0 0 0 2 0 1 0 0 2 0 1 1 0 0 10 1 1243.6085 Q9BV57;A0A0G2JQN5 Q9BV57 135 144 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 3 0.01372 30.205 By MS/MS 1 1.0394 1.0435 NaN 1 Median 1.0394 1.0435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3139500 1336700 1802800 3139500 1336700 1802800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10054 3846 10462 49886 49947;49948 49947 2 FTVDLPK LFGTLQGNTREVLHKFTVDLPKKHGRGGQS NTREVLHKFTVDLPKKHGRGGQSALRFARL K F T P K K 0 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 7 0 818.4538 B7Z7P8;P62495;I3L492 B7Z7P8 158 164 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.023925 56.122 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.95787 0.89313 11.358 4 Median 1.0616 1.0086 NaN 1 0 Median 0.90447 0.79063 NaN 1 0 Median 0.98019 0.95526 NaN 1 0 Median 0.93605 0.83504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15019000 7066600 7952200 3891700 1669700 2222000 1088600 599580 488980 7672600 3609200 4063400 2365900 1188000 1177900 0 0 0 0 0 0 10055 638 10463 49887;49888;49889;49890 49949;49950;49951;49952 49952 4 FTVETASR RNGYGAKLCNIFSTKFTVETASREYKKMFK CNIFSTKFTVETASREYKKMFKQTWMDNMG K F T S R E 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 8 0 909.4556 P11388 P11388 177 184 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0027953 104.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1.1241 0.96809 19.14 6 Median NaN NaN NaN 0 0 Median 0.9761 0.81336 16.105 2 0 Median 0.88779 0.97909 NaN 1 0 Median 1.3047 1.1456 NaN 1 0 Median 1.2318 1.2592 NaN 1 0 Median 1.156 0.95722 NaN 1 1 Median 34359000 15704000 18655000 0 0 0 3022500 1428400 1594100 4822500 2479400 2343100 1443700 600530 843190 18290000 8133300 10157000 6779900 3061900 3718000 10056 1963 10464 49891;49892;49893;49894;49895;49896;49897;49898 49953;49954;49955;49956;49957;49958;49959;49960;49961 49955 9 FTVLFPSGTPLPAR RDILVKGVDESGASRFTVLFPSGTPLPARR RFTVLFPSGTPLPARRQHTLQAPGSISSVC R F T A R R 1 1 0 0 0 0 0 1 0 0 2 0 0 2 3 1 2 0 0 1 0 0 14 0 1501.8293 Q0VDF9 Q0VDF9 412 425 HSPA14 Heat shock 70 kDa protein 14 yes yes 2 3.8342E-05 85.377 By MS/MS 1 0.72803 0.76345 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72803 0.76345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2818600 1761800 1056800 0 0 0 0 0 0 2818600 1761800 1056800 0 0 0 0 0 0 0 0 0 10057 2750 10465 49899 49962 49962 1 FTVLLMPNGPMR NVLYEKEGEFVAQFKFTVLLMPNGPMRITS QFKFTVLLMPNGPMRITSGPFEPDLYKSEM K F T M R I 0 1 1 0 0 0 0 1 0 0 2 0 2 1 2 0 1 0 0 1 0 0 12 0 1374.7152 Q9UQ80 Q9UQ80 321 332 PA2G4 Proliferation-associated protein 2G4 yes yes 2 2.5828E-09 170.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 6 3 2 1 0.85133 0.7775 89.344 19 Median 0.92917 0.928 47.523 4 0 Median 0.89301 0.7958 31.393 3 0 Median 0.81834 0.84012 66.738 6 0 Median 0.86775 0.7475 7.6357 3 0 Median 3.7843 4.1293 254.19 2 0 Median 0.76297 0.67187 NaN 1 0 Median 197820000 104410000 93413000 36988000 19932000 17056000 20911000 11301000 9610100 76754000 42745000 34009000 58024000 29158000 28867000 4856100 1121200 3734900 286970 150370 136600 10058 4360 10466;10467;10468 49900;49901;49902;49903;49904;49905;49906;49907;49908;49909;49910;49911;49912;49913;49914;49915;49916;49917;49918 49963;49964;49965;49966;49967;49968;49969;49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981 49966 1934;1935 18 FTVNETVLSTK RYRATVIQAFRDMNRFTVNETVLSTKDVLV DMNRFTVNETVLSTKDVLVLLHKWSLIERD R F T T K D 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 3 0 0 2 0 0 11 0 1237.6554 O60287 O60287 1966 1976 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.02377 51.927 By MS/MS 1 2.2058 2.4347 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2058 2.4347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11079000 2990500 8088600 0 0 0 0 0 0 11079000 2990500 8088600 0 0 0 0 0 0 0 0 0 10059 1610 10469 49919 49982 49982 1 FTVPMLK EEELKTHISKGTLGKFTVPMLKEACRAYGL ISKGTLGKFTVPMLKEACRAYGLKSGLKKQ K F T L K E 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 1 0 0 7 0 834.46735 P12956;B1AHC9 P12956 576 582 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.020466 60.294 By MS/MS By matching By MS/MS By MS/MS By matching By matching 4 2 2 5 2 2 1.1269 0.97679 35.376 17 Median 0.99118 0.96439 39.951 4 0 Median 1.1842 0.99824 4.7383 2 0 Median 0.9409 0.94752 12.249 2 0 Median 1.0982 0.91884 26.354 5 0 Median 1.6643 1.8267 60.329 2 0 Median 1.1323 0.96917 1.354 2 0 Median 96810000 48040000 48770000 20904000 10716000 10188000 16280000 7148300 9131400 49341000 25829000 23513000 7090700 3233300 3857500 2858000 964630 1893400 336090 149190 186910 10060 1985 10470;10471 49920;49921;49922;49923;49924;49925;49926;49927;49928;49929;49930;49931;49932;49933;49934;49935;49936 49983;49984;49985;49986;49987;49988;49989;49990;49991;49992 49989 765 10 FTYEYSR FNQLSSRDKDLSMARFTYEYSRRHTKLAVP DKDLSMARFTYEYSRRHTKLAVPIILRVAK R F T S R R 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 2 0 0 0 7 0 964.42905 CON__Q3SZ57 CON__Q3SZ57 355 361 yes yes 2 0.010596 91.041 By MS/MS By MS/MS 2 1 0.021839 0.020032 46.854 2 Median 0.02876 0.0279 NaN 1 1 Median 0.016584 0.014382 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13062000 12823000 239130 9130700 8995000 135630 3931500 3828000 103500 0 0 0 0 0 0 0 0 0 0 0 0 + 10061 778 10472 49937;49938;49939 49993;49994;49995 49994 3 FVAASHQVAELVK QRGEFVVSLDDGWIRFVAASHQVAELVKEL IRFVAASHQVAELVKELRCELDQLLQDKIK R F V V K E 3 0 0 0 0 1 1 0 1 0 1 1 0 1 0 1 0 0 0 3 0 0 13 0 1397.7667 Q6P158;H7C109 Q6P158 1333 1345 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2;3 0.0011594 58.37 By MS/MS By matching 2 1 0.99606 0.96322 13.836 3 Median 1.0746 1.0362 10.324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93716 0.84532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14984000 6732300 8251400 14554000 6542200 8012000 0 0 0 0 0 0 429510 190150 239360 0 0 0 0 0 0 10062 3148 10473 49940;49941;49942 49996;49997 49996 2 FVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG K F V F K A 1 0 0 1 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 895.48035 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 11 18 RPS3 40S ribosomal protein S3 yes no 1;2 0.0083939 63.054 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 7 4 3 2 5 1.2897 1.171 19.48 27 Median 1.1129 1.0397 11.368 6 0 Median 1.2757 1.0843 4.9022 7 0 Median 1.5359 1.4465 45.191 4 0 Median 1.4278 1.1822 2.339 3 0 Median 1.2713 1.2994 13.109 2 0 Median 1.5176 1.2679 4.5923 5 0 Median 455820000 203530000 252290000 312480000 143610000 168870000 76780000 32784000 43996000 26869000 10977000 15892000 5647600 2402200 3245400 23018000 9590900 13427000 11029000 4170200 6859100 10063 2112 10474 49943;49944;49945;49946;49947;49948;49949;49950;49951;49952;49953;49954;49955;49956;49957;49958;49959;49960;49961;49962;49963;49964;49965;49966;49967;49968;49969 49998;49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010 49999 12 FVAEGGPELEK PEGAETRKVIEKLARFVAEGGPELEKVAME KLARFVAEGGPELEKVAMEDYKDNPAFAFL R F V E K V 1 0 0 0 0 0 3 2 0 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1174.587 Q8IWZ8;V9GZ08;K7EM86 Q8IWZ8 198 208 SUGP1 SURP and G-patch domain-containing protein 1 yes no 2 0.0047173 68.657 By MS/MS 1 0.73536 0.74116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73536 0.74116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13800000 7709200 6090500 0 0 0 0 0 0 13800000 7709200 6090500 0 0 0 0 0 0 0 0 0 10064 3330 10475 49970 50011 50011 1 FVAELWK LNDNVATLLHQSSDRFVAELWKDVDRIVGL LLHQSSDRFVAELWKDVDRIVGLDQVTGMT R F V W K D 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 7 0 891.48544 P35580 P35580 614 620 MYH10 Myosin-10 yes yes 2 0.027697 51.572 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.83632 0.8671 27.545 4 Median 1.067 1.0295 NaN 1 0 Median 1.326 1.1755 NaN 1 0 Median 0.65552 0.73031 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62492 0.65781 NaN 1 0 Median NaN NaN NaN 0 0 Median 22136000 10959000 11177000 7469500 3489800 3979700 6917300 3000800 3916500 4492000 2543600 1948500 0 0 0 3257300 1924700 1332600 0 0 0 10065 2245 10476 49971;49972;49973;49974 50012;50013;50014;50015;50016 50012 5 FVAELWKDVDR LNDNVATLLHQSSDRFVAELWKDVDRIVGL SSDRFVAELWKDVDRIVGLDQVTGMTETAF R F V D R I 1 1 0 2 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 2 0 0 11 1 1376.7089 P35580 P35580 614 624 MYH10 Myosin-10 yes yes 2 0.00083783 111.65 By MS/MS 1 1.0848 1.0974 NaN 1 Median 1.0848 1.0974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3972300 1374900 2597400 3972300 1374900 2597400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10066 2245 10477 49975 50017 50017 1 FVAFSGEGQSLR RPLVKKVEEDEAGGRFVAFSGEGQSLRKKG GGRFVAFSGEGQSLRKKGRKP_________ R F V L R K 1 1 0 0 0 1 1 2 0 0 1 0 0 2 0 2 0 0 0 1 0 0 12 0 1296.6463 Q92890 Q92890 290 301 UFD1L Ubiquitin fusion degradation protein 1 homolog yes yes 2 2.4282E-05 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1.3598 1.1432 29.628 5 Median 0.94745 0.94968 NaN 1 0 Median 1.1726 1.0192 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3598 1.1432 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0792 1.7045 18.486 2 0 Median 58420000 27732000 30688000 38479000 19792000 18687000 5052300 2336000 2716300 0 0 0 11074000 4637600 6436000 0 0 0 3815400 966350 2849100 10067 3562 10478 49976;49977;49978;49979;49980;49981 50018;50019;50020;50021;50022;50023 50020 6 FVAFSGEGQSLRK RPLVKKVEEDEAGGRFVAFSGEGQSLRKKG GRFVAFSGEGQSLRKKGRKP__________ R F V R K K 1 1 0 0 0 1 1 2 0 0 1 1 0 2 0 2 0 0 0 1 0 0 13 1 1424.7412 Q92890 Q92890 290 302 UFD1L Ubiquitin fusion degradation protein 1 homolog yes yes 3 0.0005467 64.121 By MS/MS 1 0.92624 0.81047 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92624 0.81047 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1994000 994000 999950 0 0 0 0 0 0 0 0 0 1994000 994000 999950 0 0 0 0 0 0 10068 3562 10479 49982 50024 50024 1 FVAGALGPTNK RKAAEEVTLQTGIKRFVAGALGPTNKTLSV GIKRFVAGALGPTNKTLSVSPSVERPDYRN R F V N K T 2 0 1 0 0 0 0 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 11 0 1073.5869 Q99707;A0A494C064;A0A494C1A2 Q99707 141 151 MTR Methionine synthase yes no 2 0.013692 37.344 By MS/MS 1 1.0296 0.87725 NaN 1 Median NaN NaN NaN 0 0 Median 1.0296 0.87725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5499500 2755600 2744000 0 0 0 5499500 2755600 2744000 0 0 0 0 0 0 0 0 0 0 0 0 10069 3763 10480 49983 50025 50025 1 FVAGVGANSK RMTLKQLKDRYPRKRFVAGVGANSKISALK YPRKRFVAGVGANSKISALKGSKGKDCEIP R F V S K I 2 0 1 0 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 2 0 0 10 0 948.50288 C9J8R7;C9JNI1;A4D1E9;F8WBY0;F8WCN4;F8WBB5;C9JEQ8 C9J8R7 58 67 GTPBP10 GTP-binding protein 10 yes no 2 0.042746 30.254 By matching By MS/MS By matching 3 1 1 0.95668 0.93308 25.441 5 Median 0.86377 0.86205 8.011 3 0 Median 1.6811 1.491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3193 1.1593 NaN 1 0 Median 2331300 1036900 1294400 1147700 572070 575660 582720 237690 345030 0 0 0 0 0 0 0 0 0 600850 227160 373680 10070 502 10481 49984;49985;49986;49987;49988 50026 50026 1 FVAKENEVQSLHSK RTAEHEAAQQDLQSKFVAKENEVQSLHSKL KFVAKENEVQSLHSKLTDTLVSKQQLEQRL K F V S K L 1 0 1 0 0 1 2 0 1 0 1 2 0 1 0 2 0 0 0 2 0 0 14 1 1614.8366 Q86UP2 Q86UP2 522 535 KTN1 Kinectin yes yes 3;4 0.0044485 31.526 By MS/MS By matching By matching 3 1 1 0.90158 0.80454 25.535 5 Median 1.1706 1.1585 31.588 3 0 Median NaN NaN NaN 0 0 Median 0.74225 0.78745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90158 0.80454 NaN 1 0 Median 10380000 5033000 5346600 7513000 3495100 4017900 0 0 0 1869700 1036700 833040 0 0 0 0 0 0 996950 501270 495680 10071 3280 10482 49989;49990;49991;49992;49993 50027;50028;50029;50030 50029 4 FVALASNEK VDDDDYFLCLPSNTKFVALASNEKWAYNNS LPSNTKFVALASNEKWAYNNSDGGTAWISQ K F V E K W 2 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 9 0 977.5182 O00273;K7ERT1 O00273 85 93 DFFA DNA fragmentation factor subunit alpha yes no 2 0.0022552 73.665 By MS/MS By MS/MS By matching 2 2 1 1.133 1.0439 7.2607 5 Median 1.1337 1.0823 2.1776 2 1 Median 1.1535 0.98335 8.451 2 0 Median 0.85972 0.95881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11612000 5082000 6529800 6046300 2672900 3373400 4513700 1858300 2655400 1051800 550810 500970 0 0 0 0 0 0 0 0 0 10072 1454 10483 49994;49995;49996;49997;49998 50031;50032;50033;50034;50035 50032 5 FVASYLEYAFR AGIYDTKYAAEFHARFVASYLEYAFRKCER FHARFVASYLEYAFRKCERENGKQRAAGSP R F V F R K 2 1 0 0 0 0 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 11 0 1364.6765 Q96GM8 Q96GM8 239 249 TOE1 Target of EGR1 protein 1 yes yes 2 0.00054228 67.563 By MS/MS By matching 1 1 1.1954 1.1352 3.9502 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1261 1.1673 NaN 1 0 Median 1.2689 1.1039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4762500 2333200 2429300 0 0 0 0 0 0 4238100 2030200 2207900 524370 303030 221340 0 0 0 0 0 0 10073 3660 10484 49999;50000 50036;50037 50037 2 FVAVTSSNAAK IWERGVVGGKMDENRFVAVTSSNAAKLLNL DENRFVAVTSSNAAKLLNLYPRKGRIIPGA R F V A K L 3 0 1 0 0 0 0 0 0 0 0 1 0 1 0 2 1 0 0 2 0 0 11 0 1093.5768 Q9BPU6 Q9BPU6 373 383 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2 0.00014653 91.867 By matching By MS/MS By matching 1 1 1 1.5262 0.8327 31.812 3 Plateau 0.85559 0.82292 NaN 1 0 Median 1.7047 1.4361 NaN 1 0 Median 0.81629 0.8327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11804000 5362400 6441400 3225500 1654700 1570700 7159700 2862900 4296700 1418600 844700 573890 0 0 0 0 0 0 0 0 0 10074 3776 10485 50001;50002;50003 50038;50039 50039 2 FVCNDDVYSGPLK GPLSAKGTADAFIVRFVCNDDVYSGPLKFL VRFVCNDDVYSGPLKFLHQDIDSGQGIRNT R F V L K F 0 0 1 2 1 0 0 1 0 0 1 1 0 1 1 1 0 0 1 2 0 0 13 0 1512.6919 P11717 P11717 1040 1052 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 5.2437E-07 111.06 By MS/MS 1 1.2454 1.0997 NaN 1 Median NaN NaN NaN 0 0 Median 1.2454 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10153000 4546400 5606800 0 0 0 10153000 4546400 5606800 0 0 0 0 0 0 0 0 0 0 0 0 10075 1969 10486 50004 50040;50041 50041 2 FVDEGSLYGLSIATSR EVYVWDVNSRKCLNRFVDEGSLYGLSIATS VDEGSLYGLSIATSRNGQYVACGSNCGVVN R F V S R N 1 1 0 1 0 0 1 2 0 1 2 0 0 1 0 3 1 0 1 1 0 0 16 0 1713.8574 Q9Y5J1;J3KSR7;J3QLD6;J3QRG0;J3QR85 Q9Y5J1 420 435 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 1.7155E-05 84.289 By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 1.0892 1.0791 33.36 8 Median NaN NaN NaN 0 0 Median 1.4893 1.2981 NaN 1 0 Median 0.99475 1.0485 6.8867 2 0 Median NaN NaN NaN 0 0 Median 1.1713 1.1741 31.804 3 0 Median 0.90914 0.74778 36.159 2 0 Median 24242000 10902000 13340000 0 0 0 847270 384440 462840 6282600 2883400 3399200 0 0 0 15481000 6879000 8601600 1631400 755260 876190 10076 4458 10487 50005;50006;50007;50008;50009;50010;50011;50012 50042;50043;50044;50045;50046;50047;50048;50049;50050;50051;50052;50053 50048 12 FVDFNDPNFGDELK PKNYSIAQKRALFFRFVDFNDPNFGDELKA RFVDFNDPNFGDELKAKVLQHILNPAFLYS R F V L K A 0 0 2 3 0 0 1 1 0 0 1 1 0 3 1 0 0 0 0 1 0 0 14 0 1655.7468 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1737 1750 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00086863 57.492 By MS/MS 1 0.75965 0.81216 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75965 0.81216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11489000 6272300 5216300 0 0 0 0 0 0 11489000 6272300 5216300 0 0 0 0 0 0 0 0 0 10077 991 10488 50013 50054;50055 50055 2 FVDFNDPNFGDELKAK PKNYSIAQKRALFFRFVDFNDPNFGDELKA VDFNDPNFGDELKAKVLQHILNPAFLYSFE R F V A K V 1 0 2 3 0 0 1 1 0 0 1 2 0 3 1 0 0 0 0 1 0 0 16 1 1854.8788 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1737 1752 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00015186 46.319 By MS/MS By matching By matching By matching 1 1 2 1 0.6326 0.67374 30.162 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49956 0.56632 NaN 1 0 Median 0.42885 0.45646 NaN 1 0 Median 0.64905 0.69078 3.5323 2 0 Median 1.1698 1.0312 NaN 1 0 Median 15055000 8870400 6184300 0 0 0 0 0 0 11370000 6733100 4636700 105420 68519 36899 3347000 1925900 1421100 232460 142850 89606 10078 991 10489 50014;50015;50016;50017;50018 50056 50056 1 FVDGEWYR EGSYAPRRGEFCIAKFVDGEWYRARVEKVE GEFCIAKFVDGEWYRARVEKVESPAKIHVF K F V Y R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 8 0 1070.4821 Q7KZF4 Q7KZF4 740 747 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS 1 1 1 1.2506 1.0643 2.9069 3 Median 1.0596 1.0203 NaN 1 0 Median 1.2916 1.0787 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2506 1.0643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30066000 13772000 16295000 15506000 7453100 8053200 12021000 5136600 6884200 0 0 0 2538900 1181800 1357100 0 0 0 0 0 0 10079 3214 10490 50019;50020;50021 50057;50058;50059;50060 50057 4 FVDGLMIHSGDPVNYYVDTAVR VVSGKLRGQRAKSMKFVDGLMIHSGDPVNY HSGDPVNYYVDTAVRHVLLRQGVLGIKVKI K F V V R H 1 1 1 3 0 0 0 2 1 1 1 0 1 1 1 1 1 0 2 4 0 0 22 0 2467.1842 P23396;E9PL09;H0YEU2;E9PSF4 P23396 152 173 RPS3 40S ribosomal protein S3 yes no 3 3.3054E-12 64.723 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 1 2 1.0118 0.89116 30.366 11 Median 0.94953 0.90001 42.816 3 0 Median 1.0368 0.89116 5.8738 3 0 Median 0.95612 0.9365 17.657 2 0 Median NaN NaN NaN 0 0 Median 0.48747 0.49045 NaN 1 0 Median 1.0805 0.87713 16.305 2 0 Median 55816000 27237000 28578000 8996700 4759900 4236700 24624000 11467000 13157000 18589000 9459700 9129100 0 0 0 566010 355110 210900 3040000 1195400 1844600 10080 2112 10491;10492 50022;50023;50024;50025;50026;50027;50028;50029;50030;50031;50032 50061;50062;50063;50064;50065;50066;50067;50068;50069 50067 880 9 FVDGVSTVAR KEGMFNNANVLFKTKFVDGVSTVARFTQCQ LFKTKFVDGVSTVARFTQCQNGKISKEAKS K F V A R F 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 10 0 1049.5506 O95347 O95347 1161 1170 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00033682 98.033 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.265 1.1846 19.833 6 Median 1.2701 1.2281 NaN 1 0 Median 1.2599 1.0447 NaN 1 0 Median 1.2268 1.3419 22.696 2 0 Median 1.4498 1.2279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0638 0.8662 NaN 1 0 Median 62867000 26201000 36666000 5483700 2354300 3129400 24905000 9212900 15692000 18981000 8877100 10104000 11841000 5000200 6840600 0 0 0 1656800 756900 899920 10081 1766 10493 50033;50034;50035;50036;50037;50038 50070;50071;50072;50073;50074;50075;50076;50077 50073 8 FVDHVFDEQVIDSLTVK EYLYNLGDQYALKMRFVDHVFDEQVIDSLT DHVFDEQVIDSLTVKIILPEGAKNIEIDSP R F V V K I 0 0 0 3 0 1 1 0 1 1 1 1 0 2 0 1 1 0 0 4 0 0 17 0 1990.0048 P04843;B7Z4L4 P04843 355 371 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 6.3474E-06 74.772 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.0814 1.0186 14.06 7 Median 1.0639 1.003 0.84256 2 0 Median 1.1941 1.0155 8.9569 2 0 Median 1.0548 1.1209 NaN 1 0 Median 1.6574 1.451 NaN 1 0 Median 1.0122 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median 47323000 20956000 26367000 30088000 13514000 16574000 12183000 5065700 7117800 4082200 1949000 2133200 118370 66226 52145 850960 361320 489640 0 0 0 10082 1853 10494 50039;50040;50041;50042;50043;50044;50045 50078;50079;50080;50081;50082;50083;50084;50085;50086;50087 50079 10 FVDIFQQTPLGR VQAQYITDAEGLPKKFVDIFQQTPLGRFLA PKKFVDIFQQTPLGRFLAQLHGEPQQELLQ K F V G R F 0 1 0 1 0 2 0 1 0 1 1 0 0 2 1 0 1 0 0 1 0 0 12 0 1419.751 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 3788 3799 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 6.328E-06 118.18 By MS/MS By matching 1 1 1.0318 0.95507 14.027 2 Median 0.85701 0.86489 NaN 1 0 Median 1.2422 1.0547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4737900 2362800 2375100 3445000 1790800 1654200 1292900 571970 720930 0 0 0 0 0 0 0 0 0 0 0 0 10083 189 10495 50046;50047 50088;50089 50088 2 FVDILGLR DHAMIGPEGTDNCHKFVDILGLRTIFPLFM GTDNCHKFVDILGLRTIFPLFMKSPRKIKK K F V L R T 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 931.5491 Q8WYA6;A0A087WUB9 Q8WYA6 373 380 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.0066726 70.268 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.2182 1.1201 14.988 7 Median 1.2389 1.2389 NaN 1 0 Median 1.2182 1.0534 NaN 1 0 Median 1.1206 1.1485 3.5341 2 0 Median 1.3204 1.1111 NaN 1 0 Median 1.2614 1.267 NaN 1 0 Median 0.94971 0.80992 NaN 1 0 Median 44760000 20519000 24241000 2618900 1097800 1521100 14074000 6338800 7735300 25565000 11898000 13668000 600080 271620 328470 729950 334400 395560 1172200 578900 593320 10084 28 10496 50048;50049;50050;50051;50052;50053;50054 50090;50091;50092;50093;50094 50092 5 FVDKTEWIK LLEAVSVYPEKLATKFVDKTEWIKSLMNNS EKLATKFVDKTEWIKSLMNNSKEEMRELAA K F V I K S 0 0 0 1 0 0 1 0 0 1 0 2 0 1 0 0 1 1 0 1 0 0 9 1 1164.6179 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 691 699 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0038323 96.668 By MS/MS By matching 1 1 0.91329 0.88475 29.731 2 Median 1.1295 1.0917 NaN 1 0 Median 0.73846 0.717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12448000 5488300 6959200 10643000 4714500 5928800 1804200 773770 1030500 0 0 0 0 0 0 0 0 0 0 0 0 10085 3116 10497 50055;50056 50095 50095 1 FVDLYGAQK VSFNEVLFLYSGPFRFVDLYGAQKIVDRLK YSGPFRFVDLYGAQKIVDRLKKYEAAYGKQ R F V Q K I 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1039.5338 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 749 757 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1.1644 1.1134 20.248 9 Median 1.1079 0.97853 7.8987 2 0 Median 1.3682 1.1873 2.181 2 2 Median 1.1024 1.1062 0.90992 2 0 Median 1.4945 1.2964 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0853 0.89383 42.473 2 0 Median 106160000 48039000 58117000 41515000 19513000 22002000 25638000 10611000 15027000 35713000 16675000 19038000 2265400 818660 1446700 0 0 0 1024600 421220 603370 10086 1180 10498 50057;50058;50059;50060;50061;50062;50063;50064;50065 50096;50097;50098;50099;50100;50101;50102 50096 7 FVDPNTQEK DIYALISDQKHMRKRFVDPNTQEKVSYREL KHMRKRFVDPNTQEKVSYRELQERCRPQED R F V E K V 0 0 1 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1076.5138 P58107;A0A075B730 P58107 2054 2062 EPPK1 Epiplakin yes no 2 0.0068944 53.166 By matching By MS/MS 1 1 0.96716 0.90126 10.48 2 Median 0.97593 0.97058 NaN 1 0 Median 0.95848 0.83689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3582500 2068100 1514400 916050 467070 448980 2666500 1601000 1065500 0 0 0 0 0 0 0 0 0 0 0 0 10087 2520 10499 50066;50067 50103;50104 50104 2 FVDSGEMAESFPYR ASDKTVEVKPGMKARFVDSGEMAESFPYRT RFVDSGEMAESFPYRTKALFAFEEIDGVDL R F V Y R T 1 1 0 1 0 0 2 1 0 0 0 0 1 2 1 2 0 0 1 1 0 0 14 0 1633.7083 Q09472 Q09472 1343 1356 EP300 Histone acetyltransferase p300 yes yes 2 4.287E-08 104.79 By MS/MS By matching 1 1 0.93712 0.9174 12.414 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9125 1.0016 NaN 1 0 Median 0.96241 0.84031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6929000 3643300 3285700 0 0 0 0 0 0 6703700 3528000 3175700 225300 115280 110030 0 0 0 0 0 0 10088 2748 10500 50068;50069 50105;50106 50105 2 FVDSGEMSESFPYR SSDKTVEVKPGMKSRFVDSGEMSESFPYRT RFVDSGEMSESFPYRTKALFAFEEIDGVDV R F V Y R T 0 1 0 1 0 0 2 1 0 0 0 0 1 2 1 3 0 0 1 1 0 0 14 0 1649.7032 Q92793;I3L466;I3L3I5 Q92793 1379 1392 CREBBP CREB-binding protein yes no 2 8.0342E-08 166.55 By matching By matching By MS/MS By matching 1 2 2 2 0.83009 0.81354 18.279 7 Median 0.74957 0.75296 NaN 1 0 Median 0.79258 0.69452 22.369 2 0 Median 0.88206 0.96853 7.7349 2 0 Median 0.8746 0.76526 15.531 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18432000 9645100 8787300 1494100 834900 659180 650970 345110 305860 15320000 7959700 7360400 967230 505400 461830 0 0 0 0 0 0 10089 3557 10501;10502 50070;50071;50072;50073;50074;50075;50076 50107;50108;50109 50109 1772 3 FVEDEKDEEDNETR EAWNERAVNRVSAIRFVEDEKDEEDNETRT RFVEDEKDEEDNETRTLLRRATPHPGELKH R F V T R T 0 1 1 3 0 0 5 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 14 1 1753.7279 Q9BTT6 Q9BTT6 460 473 LRRC1 Leucine-rich repeat-containing protein 1 yes yes 3 0.0018334 37.156 By MS/MS 1 1.0888 1.1051 NaN 1 Median 1.0888 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1510300 653110 857190 1510300 653110 857190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10090 3829 10503 50077 50110;50111 50111 2 FVEDTKNEVHER SETLTEGDLVDLMKKFVEDTKNEVHEREGW MKKFVEDTKNEVHEREGWPNSPYGVSKLGV K F V E R E 0 1 1 1 0 0 3 0 1 0 0 1 0 1 0 0 1 0 0 2 0 0 12 1 1501.7161 O75828 O75828 175 186 CBR3 Carbonyl reductase [NADPH] 3 yes yes 3 0.066204 13.679 By MS/MS 1 0.77837 0.76653 NaN 1 Median 0.77837 0.76653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 721970 393660 328310 721970 393660 328310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10091 1699 10504 50078 50112 50112 1 FVEFFGPGVAQLSIADR LTITKHLRQVGVVGKFVEFFGPGVAQLSIA EFFGPGVAQLSIADRATIANMCPEYGATAA K F V D R A 2 1 0 1 0 1 1 2 0 1 1 0 0 3 1 1 0 0 0 2 0 0 17 0 1851.9519 P21399 P21399 277 293 ACO1 Cytoplasmic aconitate hydratase yes yes 2 2.5905E-05 57.836 By MS/MS By MS/MS 1 1 0.87036 0.80512 0.49816 2 Median 0.82128 0.80229 NaN 1 0 Median 0.92238 0.80796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456300 2175500 2280800 2825100 1475000 1350100 1631200 700490 930760 0 0 0 0 0 0 0 0 0 0 0 0 10092 2090 10505 50079;50080 50113;50114;50115 50114 3 FVEFLKR PPIDEVISTPGVVARFVEFLKRKENCTLQF STPGVVARFVEFLKRKENCTLQFESAWVLT R F V K R K 0 1 0 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 7 1 937.53854 P52294;C9JYI4;C9J352;C9JWD9;F2Z3G4;C9J4U1;O60684;Q5TFJ7;S4R3E5 P52294 131 137 KPNA1;KPNA6 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7 no no 2 0.024141 67.035 By MS/MS By matching 1 1 0.9637 0.90768 40.231 2 Median 1.2023 1.2064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77247 0.68295 NaN 1 0 Median 10757000 4839000 5918100 9390200 4298000 5092200 0 0 0 0 0 0 0 0 0 0 0 0 1366900 541000 825880 10093 2449;1626 10506 50081;50082 50116 50116 1 FVEGLIVTLSPR LLDSDNDGIRTHAIKFVEGLIVTLSPRMAD AIKFVEGLIVTLSPRMADSEIPRRQEHDIS K F V P R M 0 1 0 0 0 0 1 1 0 1 2 0 0 1 1 1 1 0 0 2 0 0 12 0 1329.7656 Q92797;A0A087WUE9;M0R3C7 Q92797 186 197 SYMPK Symplekin yes no 2 0.00063919 62.823 By MS/MS By matching 1 1 1.1002 1.0849 29.051 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81071 0.88347 NaN 1 0 Median 1.493 1.3323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1842600 919390 923240 0 0 0 0 0 0 1793700 901500 892240 48905 17896 31009 0 0 0 0 0 0 10094 3558 10507 50083;50084 50117;50118 50118 2 FVEGLPINDFSR LLYSFPVVIKNKTWKFVEGLPINDFSREKM TWKFVEGLPINDFSREKMDLTAKELTEEKE K F V S R E 0 1 1 1 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 1 0 0 12 0 1392.7038 P40925;B9A041;B8ZZ51 P40925 299 310 MDH1 Malate dehydrogenase, cytoplasmic yes no 2 4.1172E-06 134.68 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.9323 0.90683 3.0087 5 Median 0.91006 0.8774 2.4527 2 0 Median 1.1024 0.91643 NaN 1 0 Median 0.9323 0.90683 NaN 1 0 Median 1.1198 0.93393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 274630000 135910000 138720000 189340000 95698000 93642000 63372000 29400000 33972000 19029000 9466600 9561900 2884400 1341500 1542900 0 0 0 0 0 0 10095 2291 10508 50085;50086;50087;50088;50089;50090 50119;50120;50121;50122;50123;50124;50125;50126;50127;50128;50129;50130 50119 12 FVEKPQVFVSNK YGVVVCEADTGRIHRFVEKPQVFVSNKINA IHRFVEKPQVFVSNKINAGMYILSPAVLQR R F V N K I 0 0 1 0 0 1 1 0 0 0 0 2 0 2 1 1 0 0 0 3 0 0 12 1 1420.7715 Q9Y5P6 Q9Y5P6 159 170 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 2;3 0.00059839 75.788 By MS/MS 2 1.7294 1.6068 14.297 2 Median 1.7294 1.6068 14.297 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25482000 8833200 16649000 25482000 8833200 16649000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10096 4465 10509 50091;50092 50131;50132;50133 50133 3 FVELPGAEMGK TKARVAPEKKQDVGKFVELPGAEMGKVTVR DVGKFVELPGAEMGKVTVRFPPEASGYLHI K F V G K V 1 0 0 0 0 0 2 2 0 0 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1176.5849 P07814;V9GYZ6 P07814 187 197 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00018859 94.692 By MS/MS By MS/MS By MS/MS 1 1 1 0.9757 0.93053 4.1615 3 Median 0.9757 0.93053 NaN 1 0 Median 1.0535 0.93293 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95539 0.86696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82609000 41272000 41337000 62406000 31338000 31068000 18583000 9143400 9439300 0 0 0 1620600 790570 830050 0 0 0 0 0 0 10097 1892 10510 50093;50094;50095 50134;50135;50136;50137 50135 4 FVELVHQQK PRCIFSAIDAVYCARFVELVHQQKTPNFST AVYCARFVELVHQQKTPNFSTLLCYDRVFS R F V Q K T 0 0 0 0 0 2 1 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 9 0 1126.6135 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 999 1007 THOC2 THO complex subunit 2 yes no 2 0.0007524 100.19 By MS/MS By MS/MS By MS/MS 1 2 1 0.90645 0.88554 13.524 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79381 0.88409 NaN 1 0 Median 0.9163 0.80144 21.191 2 1 Median NaN NaN NaN 0 0 Median 1.0351 0.88699 NaN 1 0 Median 12283000 6102000 6180800 0 0 0 0 0 0 5162600 2643700 2518900 5129500 2562300 2567200 0 0 0 1990600 895880 1094700 10098 3448 10511 50096;50097;50098;50099 50138;50139;50140;50141;50142 50138 5 FVEQLGSYDPLPNSHGEK YRIVAAHNKCPRDGRFVEQLGSYDPLPNSH QLGSYDPLPNSHGEKLVALNLDRIRHWIGC R F V E K L 0 0 1 1 0 1 2 2 1 0 2 1 0 1 2 2 0 0 1 1 0 0 18 0 2015.9589 Q9Y3D3;A6ND22 Q9Y3D3 47 64 MRPS16 28S ribosomal protein S16, mitochondrial yes no 2;3;4 1.8636E-05 48.883 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.92864 0.8336 23.682 6 Median 0.72509 0.68538 19.071 2 0 Median 1.0696 0.88598 NaN 1 0 Median 0.85426 0.87172 36.517 2 0 Median 1.1601 0.98333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32846000 18210000 14636000 13789000 8394600 5394600 4162400 2218500 1944000 12948000 6703000 6245300 1945800 893920 1051900 0 0 0 0 0 0 10099 4422 10512 50100;50101;50102;50103;50104;50105 50143;50144;50145;50146;50147;50148;50149;50150 50144 8 FVEQQSYKR PLSGNSNSSGSESFKFVEQQSYKRKSEQEF GSESFKFVEQQSYKRKSEQEFSFDTPADRS K F V K R K 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 9 1 1183.5986 F8VXG7;Q99590 F8VXG7 925 933 SCAF11 Protein SCAF11 yes no 3 0.019264 37.191 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 566770 0 566770 0 0 0 0 0 0 0 0 0 0 0 0 566770 0 566770 0 0 0 10100 1072 10513 50106 50151 50151 1 FVESILSNNTTDDHCQEFVNQK RIPIPLMDYILNVMKFVESILSNNTTDDHC NNTTDDHCQEFVNQKGLLPLVTILGLPNLP K F V Q K G 0 0 3 2 1 2 2 0 1 1 1 1 0 2 0 2 2 0 0 2 0 0 22 0 2624.1813 Q7Z6Z7 Q7Z6Z7 776 797 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 4.8477E-05 36.481 By MS/MS 2 1.2774 1.1135 0.82692 2 Median NaN NaN NaN 0 0 Median 1.2774 1.1135 0.82692 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501600 2366500 3135100 0 0 0 5501600 2366500 3135100 0 0 0 0 0 0 0 0 0 0 0 0 10101 3253 10514 50107;50108 50152;50153 50152 2 FVESVDEYQFVER LRLLSQTQGPPDYPRFVESVDEYQFVERLL PRFVESVDEYQFVERLLPATRIPDPPKHEH R F V E R L 0 1 0 1 0 1 3 0 0 0 0 0 0 2 0 1 0 0 1 3 0 0 13 0 1645.7624 Q13405;E9PI78;E9PNF1 Q13405 38 50 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.00054206 71.016 By MS/MS By MS/MS By matching 1 1 1 1.0157 1.0185 13.104 3 Median 1.0157 1.0185 NaN 1 0 Median 1.5139 1.2636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9428 0.99716 NaN 1 0 Median NaN NaN NaN 0 0 Median 5073100 2186100 2887100 2790200 1196800 1593400 742640 306560 436080 0 0 0 0 0 0 1540300 682690 857640 0 0 0 10102 2810 10515 50109;50110;50111 50154;50155;50156 50154 3 FVETPGQK GSIFVVFDSIESAKKFVETPGQKYKETDLL SIESAKKFVETPGQKYKETDLLILFKDDYF K F V Q K Y 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 8 0 904.46543 P05455;E7ERC4 P05455 167 174 SSB Lupus La protein yes no 2 0.026977 41.502 By MS/MS By MS/MS 1 1 0.94009 0.94092 4.1103 2 Median 1.0022 0.96867 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88184 0.91397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3048200 1669800 1378400 2126900 1118500 1008500 0 0 0 921240 551320 369920 0 0 0 0 0 0 0 0 0 10103 1867 10516 50112;50113 50157;50158 50157 2 FVFDRPLPVSR RLLCNFMRQECLDSRFVFDRPLPVSRLVSL LDSRFVFDRPLPVSRLVSLIGSKTQIPTQR R F V S R L 0 2 0 1 0 0 0 0 0 0 1 0 0 2 2 1 0 0 0 2 0 0 11 1 1331.735 P25786;F5GX11;B4DEV8 P25786 97 107 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2;3 5.7087E-05 148.91 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 4 4 2 1 1 0.87474 0.87996 38.279 17 Median 0.83831 0.9025 29.657 5 0 Median 1.0329 0.889 10.519 4 0 Median 0.80265 0.83222 48.26 4 0 Median 0.96547 0.8645 8.8147 2 0 Median 0.73829 0.80069 NaN 1 0 Median 2.3954 2.4711 NaN 1 0 Median 316960000 166450000 150500000 256440000 133580000 122860000 19068000 9409100 9659000 34848000 20192000 14656000 1353400 634850 718510 4447400 2452100 1995300 803850 186070 617790 10104 2136 10517 50114;50115;50116;50117;50118;50119;50120;50121;50122;50123;50124;50125;50126;50127;50128;50129;50130 50159;50160;50161;50162;50163;50164;50165;50166;50167;50168;50169;50170;50171 50161 13 FVFGQNMSER SLENSTNSADASSNKFVFGQNMSERVLSPP ASSNKFVFGQNMSERVLSPPKLNEVSSDAN K F V E R V 0 1 1 0 0 1 1 1 0 0 0 0 1 2 0 1 0 0 0 1 0 0 10 0 1213.555 B7Z7F3;Q9H6Z4;K7EMH9;K7ESQ0 B7Z7F3 248 257 RANBP3 Ran-binding protein 3 yes no 2 0.01267 41.029 By matching By MS/MS 1 1 1.1132 1.0068 1.5282 2 Median 1.0559 0.99602 NaN 1 0 Median 1.1736 1.0178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30783000 14461000 16322000 26821000 12756000 14065000 3962100 1704500 2257600 0 0 0 0 0 0 0 0 0 0 0 0 10105 636 10518 50131;50132 50172 50172 1 FVFGSESVK STSETTPKAVVSPPKFVFGSESVKSIFSSE VVSPPKFVFGSESVKSIFSSEKSKPFAFGN K F V V K S 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 2 0 0 0 2 0 0 9 0 998.5073 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 2514 2522 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2 0.00089695 91.853 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0926 1.0881 23.234 6 Median NaN NaN NaN 0 0 Median 1.8139 1.5956 11.071 2 0 Median 1.0046 1.0881 0.91822 2 1 Median 1.0046 0.9815 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1592 0.99351 NaN 1 0 Median 87352000 44300000 43052000 0 0 0 6731400 2788900 3942400 74829000 38526000 36303000 4448600 2351100 2097500 0 0 0 1342500 633320 709200 10106 2401;525 10519 50133;50134;50135;50136;50137;50138;50139 50173;50174;50175;50176;50177;50178;50179;50180;50181 50174 9 FVFMLSTR RQDSINAYNEPNSTKFVFMLSTRAGGLGIN NEPNSTKFVFMLSTRAGGLGINLATADVVI K F V T R A 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 O60264 O60264 553 560 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.012659 54.549 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2755 1.3174 17.795 5 Median NaN NaN NaN 0 0 Median 1.9047 1.6885 NaN 1 0 Median 1.1977 1.3174 NaN 1 0 Median 1.6228 1.4197 NaN 1 0 Median 1.0663 1.0915 NaN 1 0 Median 1.2755 1.1276 NaN 1 0 Median 16012000 7274700 8737200 0 0 0 181080 57490 123590 6151200 2779800 3371400 275230 115440 159790 9223300 4246300 4977000 181140 75730 105410 10107 1608 10520 50140;50141;50142;50143;50144 50182;50183;50184;50185 50183 4 FVFSLVDAMNGK GAGSATLSMAYAGARFVFSLVDAMNGKEGV GARFVFSLVDAMNGKEGVVECSFVKSQETE R F V G K E 1 0 1 1 0 0 0 1 0 0 1 1 1 2 0 1 0 0 0 2 0 0 12 0 1326.6642 P40926;G3XAL0 P40926 258 269 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 9.9551E-15 186.25 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 1.4135 1.2295 15.378 12 Median 1.1496 1.041 10.146 3 0 Median 1.5753 1.3275 8.6897 5 0 Median 1.0172 0.97663 15.886 2 0 Median 1.6041 1.3621 0.96233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202440000 85372000 117070000 83743000 38334000 45410000 103440000 39858000 63586000 12697000 6184600 6512800 2555600 995260 1560300 0 0 0 0 0 0 10108 2292 10521;10522 50145;50146;50147;50148;50149;50150;50151;50152;50153;50154;50155;50156 50186;50187;50188;50189;50190;50191;50192;50193;50194;50195 50189 1045 10 FVGGGVTSAGLVQEEIR EENGQGMLQVDFANRFVGGGVTSAGLVQEE GGGVTSAGLVQEEIRFLINPELIISRLFTE R F V I R F 1 1 0 0 0 1 2 4 0 1 1 0 0 1 0 1 1 0 0 3 0 0 17 0 1717.8999 Q86W56 Q86W56 742 758 PARG Poly(ADP-ribose) glycohydrolase yes yes 2 0.0018561 49.423 By MS/MS 1 0.76367 0.73845 NaN 1 Median 0.76367 0.73845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4262800 2466800 1796100 4262800 2466800 1796100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10109 3291 10523 50157 50196 50196 1 FVGNIYTLK VPSLVPRPPQTSLVKFVGNIYTLKCRFCEV QTSLVKFVGNIYTLKCRFCEVEFQGPLSIQ K F V L K C 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 1 0 1 1 0 0 9 0 1053.5859 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 770 778 WIZ Protein Wiz yes no 2 0.030848 49.097 By MS/MS 1 1.0129 1.0823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0129 1.0823 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10748000 5489300 5258300 0 0 0 0 0 0 10748000 5489300 5258300 0 0 0 0 0 0 0 0 0 10110 656 10524 50158 50197 50197 1 FVGPGGYNLK PVVETVQVPLSKRAKFVGPGGYNLKKLQAE SKRAKFVGPGGYNLKKLQAETGVTISQVDE K F V L K K 0 0 1 0 0 0 0 3 0 0 1 1 0 1 1 0 0 0 1 1 0 0 10 0 1050.5498 Q8TCS8 Q8TCS8 620 629 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.013258 40.268 By MS/MS By MS/MS By matching 1 1 1 1.0395 0.97643 23.145 3 Median 1.0395 0.97643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1623 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73599 0.66533 NaN 1 0 Median 7085600 3735900 3349700 5123300 2799600 2323700 0 0 0 0 0 0 1777700 845880 931850 0 0 0 184590 90409 94182 10111 3467 10525 50159;50160;50161 50198;50199 50199 2 FVGQDVEGER VNPVWKKCLEEQGLKFVGQDVEGERMEIVE EQGLKFVGQDVEGERMEIVELEDHPFFVGV K F V E R M 0 1 0 1 0 1 2 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1134.5306 P17812;A0A3B3IRI2;B4E1E0 P17812 499 508 CTPS1 CTP synthase 1;CTP synthase yes no 2 4.2317E-05 138.98 By MS/MS By MS/MS By MS/MS 1 1 1 1.2085 1.0901 3.5523 2 Median 1.185 1.1178 NaN 1 0 Median 1.2325 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95074000 42176000 52898000 27038000 12622000 14416000 68036000 29554000 38482000 0 0 0 0 0 0 0 0 0 0 0 0 10112 2046 10526 50162;50163;50164 50200;50201;50202;50203;50204 50202 5 FVGVNASDINYSAGR PVPLPGDGDLLVRNRFVGVNASDINYSAGR FVGVNASDINYSAGRYDPSVKPPFDIGFEG R F V G R Y 2 1 2 1 0 0 0 2 0 1 0 0 0 1 0 2 0 0 1 2 0 0 15 0 1568.7583 Q8N4Q0 Q8N4Q0 71 85 ZADH2 Zinc-binding alcohol dehydrogenase domain-containing protein 2 yes yes 2 0.00034031 65.395 By MS/MS 1 0.80757 0.80351 NaN 1 Median 0.80757 0.80351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9197600 4337900 4859700 9197600 4337900 4859700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10113 3374 10527 50165 50205 50205 1 FVHFIDAPSLALIMPIVQR SRKTQKCLQTLLDTKFVHFIDAPSLALIMP IDAPSLALIMPIVQRAFQDRSTDTRKMAAQ K F V Q R A 2 1 0 1 0 1 0 0 1 3 2 0 1 2 2 1 0 0 0 2 0 0 19 0 2166.2024 Q92616 Q92616 1604 1622 GCN1L1 Translational activator GCN1 yes yes 3 2.5043E-08 76.85 By MS/MS By MS/MS 2 2 0.86019 0.78958 9.6516 4 Median 0.72832 0.72387 11.431 2 0 Median 0.95824 0.8138 3.4163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8469000 4316000 4153000 2774500 1475300 1299300 5694500 2840800 2853700 0 0 0 0 0 0 0 0 0 0 0 0 10114 3544 10528 50166;50167;50168;50169 50206;50207;50208;50209 50208 4 FVHLLDQSDQDFQEELDLMK TLINAEDPPMVVVRKFVHLLDQSDQDFQEE DQSDQDFQEELDLMKMREEVITLIRSNQQL K F V M K M 0 0 0 4 0 3 2 0 1 0 4 1 1 2 0 1 0 0 0 1 0 0 20 0 2449.1471 P46940;A0A0J9YXZ5;H0YLE8 P46940 872 891 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 3.5881E-19 111.18 By MS/MS 2 1.1824 1.0464 27.475 2 Median NaN NaN NaN 0 0 Median 1.1824 1.0464 27.475 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16636000 7491300 9144400 0 0 0 16636000 7491300 9144400 0 0 0 0 0 0 0 0 0 0 0 0 10115 2350 10529 50170;50171 50210;50211;50212 50211 3 FVHSENQHLVSPEALDFLDK FNDILGRHSRKRWERFVHSENQHLVSPEAL NQHLVSPEALDFLDKLLRYDHQSRLTAREA R F V D K L 1 0 1 2 0 1 2 0 2 0 3 1 0 2 1 2 0 0 0 2 0 0 20 0 2324.1437 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A087WY74 P68400 284 303 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 4 9.3437E-08 58.997 By matching By MS/MS By matching 1 1 1 1.14 0.96707 3.5231 3 Median NaN NaN NaN 0 0 Median 1.14 0.97679 NaN 1 0 Median 0.88667 0.91495 NaN 1 0 Median 1.1541 0.96707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33962000 17201000 16761000 0 0 0 936350 466500 469860 32361000 16476000 15885000 664530 258050 406480 0 0 0 0 0 0 10116 394 10530 50172;50173;50174 50213;50214;50215 50214 3 FVHTSVHGVGHSFVQSAFK KYCFHRSVNRETKVKFVHTSVHGVGHSFVQ SVHGVGHSFVQSAFKAFDLVPPEAVPEQKD K F V F K A 1 0 0 0 0 1 0 2 3 0 0 1 0 3 0 3 1 0 0 4 0 0 19 0 2070.0435 Q96G03 Q96G03 250 268 PGM2 Phosphoglucomutase-2 yes yes 3;4 1.2398E-07 61.648 By MS/MS By MS/MS 2 2 1.2349 1.153 9.0969 4 Median 1.2349 1.153 3.557 2 0 Median 1.2879 1.0778 13.792 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74150000 29898000 44251000 45113000 19309000 25804000 29037000 10590000 18447000 0 0 0 0 0 0 0 0 0 0 0 0 10117 3652 10531 50175;50176;50177;50178 50216;50217;50218;50219;50220 50216 5 FVIATSTK PLVLNRVPLRRTHQKFVIATSTKIDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA K F V T K I 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 865.49092 Q02878 Q02878 193 200 RPL6 60S ribosomal protein L6 yes yes 2 0.00054798 101.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 1.192 1.0767 16.151 6 Median 1.1415 1.0515 NaN 1 0 Median 1.0403 0.89829 23.016 2 0 Median 1.1633 1.1173 NaN 1 0 Median 1.2949 1.0968 NaN 1 0 Median 1.2214 1.2237 NaN 1 1 Median NaN NaN NaN 0 0 Median 89207000 41456000 47751000 29669000 14365000 15304000 32332000 14850000 17481000 6643600 3155100 3488500 3232200 1475100 1757100 17331000 7610100 9720600 0 0 0 10118 2703 10532 50179;50180;50181;50182;50183;50184;50185;50186;50187 50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231 50226 11 FVIFPIQYPDIWK IKSNEEPLLRKSSRRFVIFPIQYPDIWKMY RRFVIFPIQYPDIWKMYKQAQASFWTAEEV R F V W K M 0 0 0 1 0 1 0 0 0 3 0 1 0 2 2 0 0 1 1 1 0 0 13 0 1664.8967 Q7LG56;H0YAV1 Q7LG56 42 54 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B yes no 2 0.0024097 65.347 By MS/MS 1 1.1144 0.961 NaN 1 Median NaN NaN NaN 0 0 Median 1.1144 0.961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2315000 1115100 1199800 0 0 0 2315000 1115100 1199800 0 0 0 0 0 0 0 0 0 0 0 0 10119 1168 10533 50188 50232 50232 1 FVIGGPQGDAGLTGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR FVIGGPQGDAGLTGRKIIVDTYGGWGAHGG R F V G R K 1 1 0 1 0 1 0 5 0 1 1 0 0 1 1 0 1 0 0 1 0 0 15 0 1443.747 P31153 P31153 250 264 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 5.196E-10 144.65 By MS/MS By matching 2 3 0.94633 0.85056 6.6852 5 Median 0.93493 0.91289 2.8769 2 0 Median 0.94633 0.82561 4.0307 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 168090000 86068000 82024000 154600000 79522000 75081000 13489000 6546000 6942600 0 0 0 0 0 0 0 0 0 0 0 0 10120 2202 10534 50189;50190;50191;50192;50193 50233;50234;50235;50236 50233 4 FVIGGPQGDAGLTGRK YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR VIGGPQGDAGLTGRKIIVDTYGGWGAHGGG R F V R K I 1 1 0 1 0 1 0 5 0 1 1 1 0 1 1 0 1 0 0 1 0 0 16 1 1571.842 P31153 P31153 250 265 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 3 3.1669E-06 84.842 By MS/MS 1 0.91308 0.97855 NaN 1 Median 0.91308 0.97855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24787000 11565000 13222000 24787000 11565000 13222000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10121 2202 10535 50194 50237;50238 50237 2 FVIHHSMSK ATVAFGMGIDKPDVRFVIHHSMSKSMENYY DKPDVRFVIHHSMSKSMENYYQESGRAGRD R F V S K S 0 0 0 0 0 0 0 0 2 1 0 1 1 1 0 2 0 0 0 1 0 0 9 0 1084.5488 P46063 P46063 385 393 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.0074886 51.346 By MS/MS By MS/MS By MS/MS 1 1 1 1.1311 0.97644 9.376 3 Median NaN NaN NaN 0 0 Median 1.1311 0.97644 NaN 1 0 Median 0.80987 0.85466 NaN 1 0 Median 1.194 1.0241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8536900 3870300 4666600 0 0 0 2382300 695030 1687300 5025500 2693100 2332300 1129200 482100 647050 0 0 0 0 0 0 10122 2337 10536 50195;50196;50197 50239;50240;50241;50242 50240 4 FVIKPIDK FPWSEIRNISFNDKKFVIKPIDKKAPDFVF ISFNDKKFVIKPIDKKAPDFVFYAPRLRIN K F V D K K 0 0 0 1 0 0 0 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 8 1 958.58515 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 255 262 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.016199 97.093 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.0386 1.0146 2.0028 7 Median 0.99211 1.0165 NaN 1 0 Median 1.0811 1.0255 2.8929 2 0 Median 0.90389 0.99267 NaN 1 0 Median 1.0521 0.99927 2.1528 2 0 Median NaN NaN NaN 0 0 Median 1.1269 1.0191 NaN 1 0 Median 155400000 78899000 76498000 25055000 12953000 12102000 54828000 27517000 27311000 37350000 19215000 18135000 37035000 18735000 18300000 0 0 0 1128400 478780 649650 10123 2139;879;2235 10537 50198;50199;50200;50201;50202;50203;50204 50243;50244;50245;50246;50247;50248;50249;50250;50251;50252;50253 50245 11 FVIKPIDKK FPWSEIRNISFNDKKFVIKPIDKKAPDFVF SFNDKKFVIKPIDKKAPDFVFYAPRLRINK K F V K K A 0 0 0 1 0 0 0 0 0 2 0 3 0 1 1 0 0 0 0 1 0 0 9 2 1086.6801 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 255 263 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.0022883 109.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1.0307 0.99754 15.473 8 Median 0.83784 0.83661 12.471 2 0 Median 1.0307 0.99754 0.85746 2 0 Median 0.99231 1.1472 NaN 1 0 Median 1.0928 1.0544 8.8298 2 0 Median 1.141 1.272 NaN 1 0 Median NaN NaN NaN 0 0 Median 82854000 40437000 42416000 27710000 14186000 13524000 23651000 11279000 12373000 14870000 7217900 7651700 14229000 6615400 7614000 2393000 1139500 1253500 0 0 0 10124 2139;879;2235 10538 50205;50206;50207;50208;50209;50210;50211;50212;50213 50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266 50261 13 FVINYDYPNSSEDYIHR ATDVASRGLDVEDVKFVINYDYPNSSEDYI INYDYPNSSEDYIHRIGRTARSTKTGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 2 0 0 0 1 1 2 0 0 3 1 0 0 17 0 2130.9647 J3KTA4;P17844 J3KTA4 412 428 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 3.7038E-19 176.23 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 3 3 1.0915 0.99168 14.022 13 Median 1.1556 1.0883 NaN 1 0 Median 1.0756 0.93082 NaN 1 0 Median 1.002 1.0498 13.072 3 0 Median 1.1164 0.94823 4.7717 2 0 Median 1.0372 1.0858 5.5314 3 1 Median 1.1675 1.0005 19.335 3 0 Plateau 249530000 118140000 131390000 33481000 14406000 19074000 8596500 4015000 4581600 154140000 74200000 79936000 3721100 1677100 2044000 47515000 22847000 24668000 2083300 994260 1089000 10125 1334 10539 50214;50215;50216;50217;50218;50219;50220;50221;50222;50223;50224;50225;50226 50267;50268;50269;50270;50271;50272;50273;50274;50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285;50286;50287;50288;50289 50272 23 FVINYDYPNSSEDYVHR ATDVASRGLDVEDVKFVINYDYPNSSEDYV INYDYPNSSEDYVHRIGRTARSTNKGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 1 0 0 0 1 1 2 0 0 3 2 0 0 17 0 2116.949 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 489 505 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 2.5187E-14 153.63 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 4 5 2 4 0.97692 0.86902 13.672 19 Median 1.0786 1.0307 21.906 2 0 Median 1.0052 0.8804 1.8409 2 0 Median 0.78603 0.81459 8.502 4 0 Median 1.0048 0.85483 18.83 5 0 Median 0.80516 0.80568 5.2471 2 0 Median 1.0102 0.92206 5.0804 4 0 Linear 368020000 197520000 170500000 17928000 8077400 9850100 5876000 2971000 2904900 280540000 152980000 127570000 15717000 7547700 8169600 44864000 24493000 20371000 3095500 1455700 1639800 10126 343 10540 50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237;50238;50239;50240;50241;50242;50243;50244;50245 50290;50291;50292;50293;50294;50295;50296;50297;50298;50299;50300;50301;50302;50303;50304;50305;50306;50307;50308;50309;50310;50311;50312;50313;50314 50297 25 FVIQGAGAK MEDPGVRDTMLQALRFVIQGAGAKVDAVIR MLQALRFVIQGAGAKVDAVIRKNIVSLLLS R F V A K V 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 0 0 0 1 0 0 9 0 889.50215 Q92616 Q92616 2410 2418 GCN1L1 Translational activator GCN1 yes yes 2 0.017083 57.281 By MS/MS 1 0.38123 0.33794 NaN 1 Median NaN NaN NaN 0 0 Median 0.38123 0.33794 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6758700 4869600 1889100 0 0 0 6758700 4869600 1889100 0 0 0 0 0 0 0 0 0 0 0 0 10127 3544 10541 50246 50315 50315 1 FVITTTSR RACVCQTLGISPEEKFVITTTSRKEITCDN GISPEEKFVITTTSRKEITCDNFDETVKDG K F V S R K 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 3 0 0 1 0 0 8 0 923.50763 A6NHR9 A6NHR9 72 79 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0031222 101.28 By matching By MS/MS By MS/MS 1 1 2 1.3335 1.307 19.918 2 Median NaN NaN NaN 0 0 Median 1.7071 1.5047 NaN 1 0 Median 1.0417 1.1353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13722000 6568100 7154200 0 0 0 326970 116660 210310 13395000 6451500 6943900 0 0 0 0 0 0 0 0 0 10128 518 10542 50247;50248;50249;50250 50316;50317;50318;50319 50317 4 FVKEPAFEDITLESER PPIELDAVWEDIRERFVKEPAFEDITLESE VKEPAFEDITLESERKRIFKDFMHVLEHEC R F V E R K 1 1 0 1 0 0 4 0 0 1 1 1 0 2 1 1 1 0 0 1 0 0 16 1 1908.9469 O75400;A0A3F2YNY6 O75400 774 789 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2;3 3.5582E-11 169.23 By MS/MS By matching By MS/MS By matching 3 1 3 1 1.0031 1.0112 18.342 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84381 0.95733 12.618 3 0 Median 1.1115 1.0681 NaN 1 0 Median 0.9945 1.0938 31.237 3 0 Median 1.0867 0.9512 NaN 1 0 Median 128810000 68242000 60566000 0 0 0 0 0 0 114910000 61429000 53481000 568910 260510 308400 12364000 6109000 6254500 965470 443290 522180 10129 1670 10543 50251;50252;50253;50254;50255;50256;50257;50258 50320;50321;50322;50323;50324;50325;50326;50327 50322 8 FVLAPSATPAEAFIQHDETR EVFVDIDPQVSDKLRFVLAPSATPAEAFIQ SATPAEAFIQHDETRDHVEVCPDAGVIIEE R F V T R D 4 1 0 1 0 1 2 0 1 1 1 0 0 2 2 1 2 0 0 1 0 0 20 0 2199.096 C9JS27;Q7L592;C9J236 C9JS27 208 227 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 3 1.0761E-07 58.49 By matching By MS/MS 1 1 0.66874 0.70296 9.736 2 Median 0.74231 0.75306 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60247 0.6562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11636000 6898900 4736700 1551100 755700 795400 0 0 0 10084000 6143200 3941300 0 0 0 0 0 0 0 0 0 10130 721 10544 50259;50260 50328;50329 50328 2 FVLDHEDGLNLNEDLENFLQK QFEYKIQAELAVILKFVLDHEDGLNLNEDL DGLNLNEDLENFLQKAPVPSTCSSTFPEEL K F V Q K A 0 0 3 3 0 1 3 1 1 0 5 1 0 2 0 0 0 0 0 1 0 0 21 0 2501.2074 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;Q14980 Q14980 133 153 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 8.2854E-26 129.46 By MS/MS 1 1.0207 0.90434 NaN 1 Median NaN NaN NaN 0 0 Median 1.0207 0.90434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11126000 5120700 6005700 0 0 0 11126000 5120700 6005700 0 0 0 0 0 0 0 0 0 0 0 0 10131 2905;77 10545 50261 50330 50330 1 FVLINWTGEGVNDVRK YAFCRVKDPNSGLPKFVLINWTGEGVNDVR VLINWTGEGVNDVRKGACASHVSTMASFLK K F V R K G 0 1 2 1 0 0 1 2 0 1 1 1 0 1 0 0 1 1 0 3 0 0 16 1 1845.9737 Q9UJU6;F8WBG8 Q9UJU6 79 94 DBNL Drebrin-like protein yes no 3 0.0099721 23.138 By MS/MS By MS/MS 1 1 1.077 1.0332 24.198 2 Median 1.2167 1.226 NaN 1 0 Median 0.95324 0.87073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5290000 2157000 3133000 2232900 961050 1271800 3057100 1195900 1861200 0 0 0 0 0 0 0 0 0 0 0 0 10132 4298 10546 50262;50263 50331;50332 50331 2 FVLNLIK QIIEEDAALVEIGPRFVLNLIKIFQGSFGG ALVEIGPRFVLNLIKIFQGSFGGPTLYENP R F V I K I 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 845.53747 Q8TDN6 Q8TDN6 236 242 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.019054 61.997 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 2 6 4 1.2468 1.197 12.142 16 Median 1.11 1.0649 36.8 2 0 Median 1.3016 1.1108 NaN 1 0 Median 1.2117 1.2638 NaN 1 0 Median 1.3916 1.1479 3.5879 2 0 Median 1.2102 1.2432 6.2193 6 0 Median 1.3764 1.1696 7.2811 4 0 Median 73346000 32172000 41173000 2796000 1336200 1459800 1203900 481220 722660 7554400 3262600 4291800 1115200 505120 610040 56929000 25030000 31899000 3746800 1556900 2189900 10133 3473 10547 50264;50265;50266;50267;50268;50269;50270;50271;50272;50273;50274;50275;50276;50277;50278;50279 50333;50334;50335;50336;50337 50336 5 FVLRPHTLNSTSTSK GCARSEPKMSAHVKRFVLRPHTLNSTSTSK FVLRPHTLNSTSTSKSFQSTVTGELNAPYS R F V S K S 0 1 1 0 0 0 0 0 1 0 2 1 0 1 1 3 3 0 0 1 0 0 15 1 1686.9053 Q8NEZ4 Q8NEZ4 4722 4736 KMT2C Histone-lysine N-methyltransferase 2C yes yes 3 0.04604 14.228 By MS/MS 1 0.7975 0.92147 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7975 0.92147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1961600 1123600 837950 0 0 0 0 0 0 1961600 1123600 837950 0 0 0 0 0 0 0 0 0 10134 3431 10548 50280 50338 50338 1 FVLSGANIMCPGLTSPGAK PFILPHQQVDKGAIKFVLSGANIMCPGLTS GANIMCPGLTSPGAKLYPAAVDTIVAIMAE K F V A K L 2 0 1 0 1 0 0 3 0 1 2 1 1 1 2 2 1 0 0 1 0 0 19 0 1918.9645 Q9ULC4;A0A3B3IRV3 Q9ULC4 104 122 MCTS1 Malignant T-cell-amplified sequence 1 yes no 2 0.0027522 28.806 By matching By MS/MS By matching 1 1 1 0.9043 0.80856 14.592 3 Median 0.68593 0.64599 NaN 1 0 Median 0.92968 0.80856 NaN 1 0 Median 0.9043 0.84942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3022500 1478800 1543700 1116100 596030 520080 1081400 490190 591200 825030 392620 432410 0 0 0 0 0 0 0 0 0 10135 4323 10549 50281;50282;50283 50339 50339 1 FVLSGNLHGGSVVASYPFDDSPEHK VPEVRALIEWIRRNKFVLSGNLHGGSVVAS SVVASYPFDDSPEHKATGIYSKTSDDEVFK K F V H K A 1 0 1 2 0 0 1 3 2 0 2 1 0 2 2 4 0 0 1 3 0 0 25 0 2658.2714 O75976 O75976 250 274 CPD Carboxypeptidase D yes yes 4 0.0020269 25.221 By MS/MS By matching 1 1 0.81532 0.7452 30.278 2 Median 0.62572 0.60158 NaN 1 0 Median 1.0624 0.92311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5347000 3094000 2253000 4496200 2642200 1854000 850790 451770 399020 0 0 0 0 0 0 0 0 0 0 0 0 10136 1714 10550 50284;50285 50340 50340 1 FVLSQAK VSEHSGGRDLDSLHRFVLSQAKDEL_____ RDLDSLHRFVLSQAKDEL____________ R F V A K D 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 7 0 791.45414 Q8NBS9 Q8NBS9 423 429 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.030589 64.803 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 988130 0 988130 0 0 0 988130 0 988130 0 0 0 0 0 0 0 0 0 0 0 0 10137 3410 10551 50286 50341 50341 1 FVLSQAKDEL VSEHSGGRDLDSLHRFVLSQAKDEL_____ DSLHRFVLSQAKDEL_______________ R F V E L - 1 0 0 1 0 1 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1148.6077 Q8NBS9 Q8NBS9 423 432 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.056002 42.109 By MS/MS 1 1.1811 1.1383 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1811 1.1383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15074000 7060800 8013500 0 0 0 0 0 0 15074000 7060800 8013500 0 0 0 0 0 0 0 0 0 10138 3410 10552 50287 50342 50342 1 FVMEVEVDGQK KYELISETGGSHDKRFVMEVEVDGQKFQGA HDKRFVMEVEVDGQKFQGAGSNKKVAKAYA R F V Q K F 0 0 0 1 0 1 2 1 0 0 0 1 1 1 0 0 0 0 0 3 0 0 11 0 1279.6118 Q12906;Q96SI9 Q12906 555 565 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2 0.00014929 141.2 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 4 1.0373 0.98017 14.264 13 Median 0.7685 0.69127 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0307 1.1116 8.5516 3 0 Median 1.1904 1.0312 8.2736 3 0 Plateau 0.94954 0.96507 3.3209 2 0 Median 1.115 0.91507 9.4242 4 1 Median 145920000 73271000 72646000 16175000 9814600 6360500 0 0 0 49036000 24465000 24571000 10009000 4936600 5072100 51840000 24668000 27172000 18857000 9386900 9470400 10139 2769;3734 10553;10554 50288;50289;50290;50291;50292;50293;50294;50295;50296;50297;50298;50299;50300 50343;50344;50345;50346;50347;50348;50349;50350;50351;50352;50353;50354;50355;50356;50357;50358;50359;50360;50361;50362;50363;50364;50365;50366 50362 1485 24 FVMEVEVDGQKFQGAGSNKK KYELISETGGSHDKRFVMEVEVDGQKFQGA EVDGQKFQGAGSNKKVAKAYAALAALEKLF R F V K K V 1 0 1 1 0 2 2 3 0 0 0 3 1 2 0 1 0 0 0 3 0 0 20 2 2197.0838 Q12906 Q12906 555 574 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 4.14E-19 111.77 By matching By MS/MS 2 3 1.0234 1.0391 13.239 5 Median 1.0433 1.0194 2.7152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99155 1.1054 15.82 3 0 Median NaN NaN NaN 0 0 Median 35632000 15899000 19733000 6189400 2433500 3755900 0 0 0 0 0 0 0 0 0 29443000 13465000 15978000 0 0 0 10140 2769 10555 50301;50302;50303;50304;50305 50367;50368;50369 50367 3 FVMKPPQVVR MREKNPDMVAGEKRKFVMKPPQVVRVGTKK GEKRKFVMKPPQVVRVGTKKTSFVNFTDIC K F V V R V 0 1 0 0 0 1 0 0 0 0 0 1 1 1 2 0 0 0 0 3 0 0 10 1 1199.6849 P20042 P20042 202 211 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 0.00013457 88.177 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 4 6 1 0.91612 0.89681 23.093 10 Median 0.94272 0.94124 NaN 1 0 Median 0.80433 0.73514 NaN 1 0 Median 0.91289 0.92571 4.3407 2 1 Median 0.94599 0.8959 27.962 5 0 Median NaN NaN NaN 0 0 Median 0.64945 0.59273 NaN 1 0 Median 117480000 63380000 54101000 5445500 2806600 2638900 1678400 909700 768720 25983000 12900000 13084000 83019000 45927000 37091000 0 0 0 1355100 836820 518310 10141 2072 10556;10557 50306;50307;50308;50309;50310;50311;50312;50313;50314;50315;50316;50317;50318 50370;50371;50372;50373;50374;50375;50376;50377;50378;50379;50380;50381;50382;50383;50384 50382 834 15 FVMQEEFSR GEIPVVAIRTAKGEKFVMQEEFSRDGKALE TAKGEKFVMQEEFSRDGKALERFLQDYFDG K F V S R D 0 1 0 0 0 1 2 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 9 0 1171.5332 P30101 P30101 336 344 PDIA3 Protein disulfide-isomerase A3 yes yes 2 1.7692E-07 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 3 3 1 2 1.1874 1.0963 15.818 17 Median 1.1139 1.0636 6.3585 5 0 Median 1.3087 1.0963 3.7909 3 0 Median 1.1117 1.0948 17.134 3 1 Plateau 1.3773 1.1786 15.76 3 0 Median 1.5985 1.6042 NaN 1 0 Median 1.6007 1.392 4.9701 2 0 Median 339190000 154850000 184340000 198170000 91969000 106200000 58886000 25194000 33692000 56550000 26959000 29591000 19195000 7996400 11199000 5278500 2298900 2979500 1108600 430790 677820 10142 2189 10558;10559 50319;50320;50321;50322;50323;50324;50325;50326;50327;50328;50329;50330;50331;50332;50333;50334;50335 50385;50386;50387;50388;50389;50390;50391;50392;50393;50394;50395;50396;50397;50398 50389 928 14 FVMVVDSSNTALR EDYKVYGYVTNSKVKFVMVVDSSNTALRDN VKFVMVVDSSNTALRDNEIRSMFRKLHNSY K F V L R D 1 1 1 1 0 0 0 0 0 0 1 0 1 1 0 2 1 0 0 3 0 0 13 0 1437.7286 A0A0B4J294;H3BP13;Q9UL33;H3BUK6;H3BQQ8 A0A0B4J294 80 92 TRAPPC2L Trafficking protein particle complex subunit 2-like protein yes no 2 0.0010843 74.162 By MS/MS By MS/MS 1 1 1.0604 0.96408 11.886 2 Median 0.90926 0.88636 NaN 1 1 Median 1.2367 1.0486 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8982700 4331000 4651700 4312200 2181600 2130500 4670500 2149300 2521200 0 0 0 0 0 0 0 0 0 0 0 0 10143 218 10560 50336;50337 50399;50400 50399 2 FVNDTLR KNCAKGVDDQKKDKRFVNDTLRSEFHKKFM DDQKKDKRFVNDTLRSEFHKKFMEKYIK__ R F V L R S 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 863.45012 Q9P013 Q9P013 210 216 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2 0.0080733 86.866 By matching By MS/MS By MS/MS By matching 1 3 2 1 1.0361 1.037 24.072 7 Median 1.3057 1.2485 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0118 0.9927 10.142 3 0 Median 1.1539 0.89565 25.43 2 0 Median 1.5886 1.5602 NaN 1 0 Median NaN NaN NaN 0 0 Median 23782000 10680000 13103000 3539500 1353400 2186100 0 0 0 9500900 4448900 5051900 8749900 3972500 4777400 1992000 904720 1087300 0 0 0 10144 4196 10561 50338;50339;50340;50341;50342;50343;50344 50401;50402;50403;50404 50401 4 FVNDYDKDNDGR TANEDPEWILVEKDRFVNDYDKDNDGRLDP KDRFVNDYDKDNDGRLDPQELLPWVVPNNQ R F V G R L 0 1 2 4 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 12 1 1456.6219 Q14257;A8MXP8 Q14257 235 246 RCN2 Reticulocalbin-2 yes no 3 0.00026205 60.49 By MS/MS By MS/MS 1 1 1.0856 1.087 5.3236 2 Median 0.97764 1.0469 NaN 1 0 Median 1.2055 1.1287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4452800 2032600 2420200 2102200 989170 1113000 2350600 1043400 1307200 0 0 0 0 0 0 0 0 0 0 0 0 10145 2869 10562 50345;50346 50405;50406;50407;50408 50408 4 FVNLFPEVKPTIQDVLR CSVPTRALLLSTYIKFVNLFPEVKPTIQDV NLFPEVKPTIQDVLRSDSQLRNADVELQQR K F V L R S 0 1 1 1 0 1 1 0 0 1 2 1 0 2 2 0 1 0 0 3 0 0 17 1 2014.1251 O94973;A0A0G2JS82;A0A0G2JQM1 O94973 547 563 AP2A2 AP-2 complex subunit alpha-2 yes no 3 0.00031649 52.522 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.86759 0.98769 27.06 5 Median 0.7231 0.74298 12.882 2 0 Median 0.99937 0.99362 NaN 1 1 Median 0.86759 0.98769 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2621 1.403 NaN 1 0 Median NaN NaN NaN 0 0 Median 11949000 5737300 6211400 2504800 1191800 1313000 6833500 3181700 3651900 1672300 879810 792460 0 0 0 938050 484000 454050 0 0 0 10146 1741 10563 50347;50348;50349;50350;50351;50352 50409;50410;50411;50412;50413;50414;50415 50414 7 FVNLGIEPPK KLREVVETPLLHPERFVNLGIEPPKGVLLF LHPERFVNLGIEPPKGVLLFGPPGTGKTLC R F V P K G 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 0 1 0 0 10 0 1112.623 P35998 P35998 201 210 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.003598 69.598 By MS/MS 2 1.2336 1.1412 32.986 2 Median 1.2336 1.1412 32.986 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30471000 12910000 17561000 30471000 12910000 17561000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10147 2253 10564 50353;50354 50416;50417 50417 2 FVNLGIEPPKGVLLFGPPGTGK KLREVVETPLLHPERFVNLGIEPPKGVLLF PPKGVLLFGPPGTGKTLCARAVANRTDACF R F V G K T 0 0 1 0 0 0 1 5 0 1 3 2 0 2 4 0 1 0 0 2 0 0 22 1 2236.262 P35998 P35998 201 222 PSMC2 26S protease regulatory subunit 7 yes yes 3 9.5112E-07 40.012 By MS/MS By matching 1 1 0.76011 0.77132 36.409 2 Median 0.61863 0.59624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93395 0.9978 NaN 1 0 Median NaN NaN NaN 0 0 Median 3516400 2350300 1166100 2703400 1798400 905030 0 0 0 0 0 0 0 0 0 812970 551880 261090 0 0 0 10148 2253 10565 50355;50356 50418;50419 50418 2 FVNLISER GTDELRLLYGMALVRFVNLISERKTKFAKV YGMALVRFVNLISERKTKFAKVPLKCLAQE R F V E R K 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 8 0 976.53418 Q9Y4W2 Q9Y4W2 122 129 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.0026718 126.28 By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.4289 1.4569 32.601 6 Median 1.4144 1.3844 NaN 1 0 Median 1.2721 1.1045 NaN 1 0 Median 1.3142 1.3886 14.003 2 0 Median NaN NaN NaN 0 0 Median 1.8637 1.9217 NaN 1 0 Median 3.328 2.7185 NaN 1 0 Median 27893000 11960000 15933000 2711500 1263300 1448200 2295200 1067100 1228100 14668000 6702300 7965900 0 0 0 7346700 2698900 4647900 871560 228570 642990 10149 4448 10566 50357;50358;50359;50360;50361;50362 50420;50421;50422;50423 50420 4 FVNPEDVAR NGKLRYEIDTGEETKFVNPEDVARLIFSKM TGEETKFVNPEDVARLIFSKMKETAHSVLG K F V A R L 1 1 1 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 9 0 1045.5193 Q0VDF9;H7C2A1 Q0VDF9 110 118 HSPA14 Heat shock 70 kDa protein 14 yes no 2 0.0035603 64.265 By matching By matching By MS/MS 1 1 1 1.0034 0.89275 18.933 3 Plateau NaN NaN NaN 0 0 Median 0.73258 0.63807 NaN 1 0 Median 0.83547 0.87816 NaN 1 0 Median 1.0409 0.89275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6704400 3351500 3352900 0 0 0 1204600 680440 524170 2249100 1132300 1116800 3250700 1538700 1711900 0 0 0 0 0 0 10150 2750 10567 50363;50364;50365 50424 50424 1 FVNQLKGESR ASYCIEHGDLELAAKFVNQLKGESRRVAQD ELAAKFVNQLKGESRRVAQDWLKEARMTLE K F V S R R 0 1 1 0 0 1 1 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1176.6251 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 709 718 IMMT MICOS complex subunit MIC60 yes no 2 0.035914 47.603 By MS/MS 1 0.97627 1.0005 NaN 1 Median 0.97627 1.0005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3207000 1611100 1595900 3207000 1611100 1595900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10151 3001 10568 50366 50425;50426 50425 2 FVNVVPTFGK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN QYNRRFVNVVPTFGKKKGPNANS_______ R F V G K K 0 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 10 0 1106.6124 E9PR30;P62861 E9PR30 81 90 FAU 40S ribosomal protein S30 yes no 2 0.00036244 105.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 0.93612 0.85931 27.644 8 Median 0.82461 0.75859 12.488 2 0 Median 0.72846 0.5986 48.851 2 1 Median 0.94705 0.90073 NaN 1 0 Median 1.08 0.87327 NaN 1 0 Median 0.90193 0.96609 12.348 2 1 Median NaN NaN NaN 0 0 Median 249180000 129140000 120050000 151700000 80230000 71471000 32813000 16754000 16059000 26221000 13121000 13100000 3619900 1736400 1883500 34829000 17296000 17534000 0 0 0 10152 983 10569 50367;50368;50369;50370;50371;50372;50373;50374 50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439;50440;50441;50442;50443 50439 17 FVNVVPTFGKK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN YNRRFVNVVPTFGKKKGPNANS________ R F V K K K 0 0 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 11 1 1234.7074 E9PR30;P62861 E9PR30 81 91 FAU 40S ribosomal protein S30 yes no 2;3 4.0803E-05 108.98 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 0.99052 0.93681 6.1068 11 Median 0.9554 0.9261 5.3665 4 0 Median 1.0803 0.9365 5.8337 3 0 Median 0.92796 0.9412 13.383 2 0 Median NaN NaN NaN 0 0 Median 0.96282 0.96377 4.0114 2 0 Median NaN NaN NaN 0 0 Median 176720000 89633000 87086000 106900000 54542000 52356000 37534000 18004000 19530000 16196000 8428900 7766900 0 0 0 16091000 8658500 7432800 0 0 0 10153 983 10570 50375;50376;50377;50378;50379;50380;50381;50382;50383;50384;50385 50444;50445;50446;50447;50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464 50450 21 FVNWQVDGEYR PGLRSKMAIQTQQSKFVNWQVDGEYRGSDF QQSKFVNWQVDGEYRGSDFTAAVTLGNPDV K F V Y R G 0 1 1 1 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 11 0 1411.6521 O96008;K7EKG4;K7EJ57 O96008 185 195 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 3.2277E-06 157.91 By MS/MS By matching By MS/MS By MS/MS By matching 2 3 1 1 1 1.215 1.1178 10.82 8 Median 1.1639 1.1499 6.2641 2 0 Median 1.3174 1.1358 13.562 3 0 Median 1.1922 1.2987 NaN 1 0 Median 1.1713 1.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.244 1.0141 NaN 1 0 Median 94087000 44191000 49896000 77838000 36772000 41066000 3974900 2011700 1963200 10305000 4541900 5762700 1528700 653570 875150 0 0 0 440660 212110 228550 10154 1806 10571 50386;50387;50388;50389;50390;50391;50392;50393 50465;50466;50467;50468;50469;50470 50467 6 FVPAEMGTHTVSVK EAEIVEGENHTYCIRFVPAEMGTHTVSVKY RFVPAEMGTHTVSVKYKGQHVPGSPFQFTV R F V V K Y 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 2 0 0 3 0 0 14 0 1501.7599 P21333;H0Y5C6;Q60FE5 P21333 2202 2215 FLNA Filamin-A no no 2;3 6.3109E-08 128.01 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 9 1 4 1 2 0.96801 0.92064 25.793 24 Median 1.0053 1.0101 28.986 7 0 Median 0.89068 0.78837 15.246 9 2 Median 1.6852 1.8544 NaN 1 1 Median 0.86943 0.83625 14.378 4 0 Median 1.1472 1.2019 NaN 1 0 Median 0.91463 0.86991 19.71 2 0 Median 837380000 432740000 404640000 241320000 117910000 123410000 550520000 297040000 253490000 27354000 8710700 18644000 10207000 5490800 4716200 5646000 2597500 3048600 2325900 996970 1328900 10155 2088;3120 10572;10573 50394;50395;50396;50397;50398;50399;50400;50401;50402;50403;50404;50405;50406;50407;50408;50409;50410;50411;50412;50413;50414;50415;50416;50417 50471;50472;50473;50474;50475;50476;50477;50478;50479;50480;50481;50482;50483;50484;50485;50486;50487;50488;50489;50490;50491;50492;50493;50494 50480 852 24 FVPDKEFSGSDR DMYGDDLEARIKTNRFVPDKEFSGSDRRQR TNRFVPDKEFSGSDRRQRGREGPVQFEEDP R F V D R R 0 1 0 2 0 0 1 1 0 0 0 1 0 2 1 2 0 0 0 1 0 0 12 1 1382.6466 Q13573;G3V4X8 Q13573 472 483 SNW1 SNW domain-containing protein 1 yes no 3 0.010403 43.991 By MS/MS By MS/MS 1 2 0.98668 1.0172 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98668 1.0172 NaN 1 1 Median NaN NaN NaN 0 0 Median 5607700 2557500 3050200 0 0 0 0 0 0 0 0 0 0 0 0 5607700 2557500 3050200 0 0 0 10156 2826 10574 50418;50419;50420 50495;50496;50497 50495 3 FVPDKEFSGSDRR DMYGDDLEARIKTNRFVPDKEFSGSDRRQR NRFVPDKEFSGSDRRQRGREGPVQFEEDPF R F V R R Q 0 2 0 2 0 0 1 1 0 0 0 1 0 2 1 2 0 0 0 1 0 0 13 2 1538.7478 Q13573;G3V4X8 Q13573 472 484 SNW1 SNW domain-containing protein 1 yes no 3 0.00040072 70.089 By MS/MS By MS/MS 1 1 0.96136 1.0785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96136 1.0785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5477500 2865500 2612000 0 0 0 0 0 0 5477500 2865500 2612000 0 0 0 0 0 0 0 0 0 10157 2826 10575 50421;50422 50498;50499 50499 2 FVPFSFSLLSSK WVEFQNKFYVGAGTKFVPFSFSLLSSKFNN GTKFVPFSFSLLSSKFNNDDSVA_______ K F V S K F 0 0 0 0 0 0 0 0 0 0 2 1 0 3 1 4 0 0 0 1 0 0 12 0 1357.7282 Q9Y487;F5H847;F5GX48 Q9Y487 837 848 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2;V-type proton ATPase subunit a yes no 2 0.032347 27.329 By MS/MS By matching 1 1 0.8382 0.78487 38.933 2 Median 1.0389 1.0336 NaN 1 0 Median 0.67628 0.59599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1872600 1017100 855480 1043400 538690 504730 829210 478460 350750 0 0 0 0 0 0 0 0 0 0 0 0 10158 4440 10576 50423;50424 50500 50500 1 FVPLILAR QIIQELSVNMDAQMRFVPLILARLLLIFDY NMDAQMRFVPLILARLLLIFDYLLHQYSKA R F V A R L 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 8 0 927.59057 Q5T4S7 Q5T4S7 850 857 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.043245 36.185 By MS/MS By matching 1 1 0.89573 0.82565 3.4692 2 Median 0.83825 0.84616 NaN 1 0 Median 0.95715 0.80565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3489800 1804000 1685700 1802800 985050 817790 1686900 819000 867950 0 0 0 0 0 0 0 0 0 0 0 0 10159 3089 10577 50425;50426 50501 50501 1 FVPLLPGNR PQTECRHKSIELFYKFVPLLPGNRSPNLWL IELFYKFVPLLPGNRSPNLWLKDVLKEEGV K F V N R S 0 1 1 0 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 9 0 1011.5866 P78527 P78527 1194 1202 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0008508 94.407 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 1 3 1.0809 0.8887 16.52 14 Median 0.69408 0.66062 0.94431 2 0 Median 1.1497 0.94495 5.8973 2 0 Median 0.69306 0.73213 5.4448 3 0 Median 1.171 1.0209 4.7083 3 0 Plateau 0.66585 0.6821 NaN 1 0 Median 1.1118 0.91849 4.5099 3 0 Median 374770000 210240000 164530000 94998000 55193000 39805000 42948000 19460000 23488000 205880000 119210000 86677000 11184000 5264600 5919300 14826000 8765800 6060200 4932500 2349100 2583500 10160 2647 10578 50427;50428;50429;50430;50431;50432;50433;50434;50435;50436;50437;50438;50439;50440 50502;50503;50504;50505;50506;50507;50508;50509;50510;50511;50512;50513;50514;50515;50516;50517;50518;50519;50520;50521 50503 20 FVPNLPK VYSNMGNYKSFGDTKFVPNLPKEKLERVIL YKSFGDTKFVPNLPKEKLERVILGSEAAQQ K F V P K E 0 0 1 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 7 0 813.47487 G3V1D3;G3V180;Q9NY33;E9PQ14;E9PPK9;E9PNX5 G3V1D3 133 139 DPP3 Dipeptidyl peptidase 3 yes no 2 0.040961 44.611 By MS/MS By matching 1 1 0.72036 0.71296 10.292 2 Median 0.71885 0.66292 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72187 0.76678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9447900 5510600 3937300 6893100 3938000 2955100 0 0 0 2554800 1572600 982190 0 0 0 0 0 0 0 0 0 10161 1102 10579 50441;50442 50522;50523 50523 2 FVPPALEK SATQFTGRYHYLGGRFVPPALEKKYQLNLP YHYLGGRFVPPALEKKYQLNLPPYPDTECV R F V E K K 1 0 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 8 0 899.51165 Q8NCW5 Q8NCW5 262 269 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 0.012861 54.157 By matching By MS/MS 1 1 0.89478 0.78708 19.942 2 Median 0.74094 0.68356 NaN 1 0 Median 1.0806 0.90627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78137000 43468000 34669000 70877000 40094000 30784000 7259500 3373700 3885800 0 0 0 0 0 0 0 0 0 0 0 0 10162 3420 10580 50443;50444 50524;50525 50525 2 FVPPALEKK SATQFTGRYHYLGGRFVPPALEKKYQLNLP HYLGGRFVPPALEKKYQLNLPPYPDTECVY R F V K K Y 1 0 0 0 0 0 1 0 0 0 1 2 0 1 2 0 0 0 0 1 0 0 9 1 1027.6066 Q8NCW5 Q8NCW5 262 270 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 0.027396 40.002 By MS/MS By matching 1 1 0.86723 0.83833 14.689 2 Median 0.74233 0.75562 NaN 1 0 Median 1.0131 0.93008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4865000 2696300 2168700 4210900 2436700 1774200 654120 259670 394440 0 0 0 0 0 0 0 0 0 0 0 0 10163 3420 10581 50445;50446 50526 50526 1 FVPPQTSSGNR SNYQQTTISHSPSSRFVPPQTSSGNRFMPQ PSSRFVPPQTSSGNRFMPQQNSPVPSPYAP R F V N R F 0 1 1 0 0 1 0 1 0 0 0 0 0 1 2 2 1 0 0 1 0 0 11 0 1188.5887 A0A590UJS4;Q6KC79 A0A590UJS4 155 165 NIPBL Nipped-B-like protein yes no 2 0.0020823 55.461 By MS/MS 1 0.83748 0.87784 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83748 0.87784 NaN 1 0 Median NaN NaN NaN 0 0 Median 2191200 908650 1282600 0 0 0 0 0 0 0 0 0 0 0 0 2191200 908650 1282600 0 0 0 10164 488 10582 50447 50527;50528 50528 2 FVPQEMGPHTVAVK AAEIVEGEDSAYSVRFVPQEMGPHTVAVKY RFVPQEMGPHTVAVKYRGQHVPGSPFQFTV R F V V K Y 1 0 0 0 0 1 1 1 1 0 0 1 1 1 2 0 1 0 0 3 0 0 14 0 1538.7915 Q14315 Q14315 2278 2291 FLNC Filamin-C yes yes 2;3 6.8436E-09 118.4 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 1 0.92381 0.82396 23.02 11 Median 0.93601 0.92002 6.7285 4 1 Median 0.73515 0.65632 18.097 4 1 Median 0.85754 0.97135 34.81 2 0 Median 0.92381 0.89798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 346550000 180760000 165780000 115860000 57461000 58401000 212460000 113590000 98873000 14760000 7945600 6814500 3463400 1767100 1696300 0 0 0 0 0 0 10165 2871 10583 50448;50449;50450;50451;50452;50453;50454;50455;50456;50457;50458 50529;50530;50531;50532;50533;50534;50535;50536;50537;50538;50539;50540;50541 50531 13 FVPQEMGVHTVSVK EAEIVPMGKNSHCVRFVPQEMGVHTVSVKY RFVPQEMGVHTVSVKYRGQHVTGSPFQFTV R F V V K Y 0 0 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 0 0 4 0 0 14 0 1556.8021 O75369;E7EN95;H7C5L4 O75369 2157 2170 FLNB Filamin-B yes no 2;3 6.9668E-08 101.39 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 2 1 0.9888 0.96202 19.671 14 Median 1.0053 0.98384 5.6546 4 1 Median 1.0831 0.96027 29.706 5 2 Median 0.74038 0.82057 17.676 2 0 Median 0.99305 0.93603 21.329 2 0 Median 0.96085 1.0094 NaN 1 0 Median NaN NaN NaN 0 0 Median 303180000 144700000 158480000 117600000 55400000 62201000 159700000 75964000 83735000 19630000 10268000 9361700 2393700 1110100 1283600 3861600 1962500 1899100 0 0 0 10166 1664 10584;10585 50459;50460;50461;50462;50463;50464;50465;50466;50467;50468;50469;50470;50471;50472 50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557 50551 529 16 FVPYLIAGIQHSCQDIGAK QGVSGAVQDKGSIHKFVPYLIAGIQHSCQD LIAGIQHSCQDIGAKSLTQVRAMMYSGELK K F V A K S 2 0 0 1 1 2 0 2 1 3 1 1 0 1 1 1 0 0 1 1 0 0 19 0 2116.0775 P12268;H0Y4R1 P12268 456 474 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 0.033902 12.848 By MS/MS By matching 1 1 1.0687 0.96068 17.305 2 Median 1.1452 1.0857 NaN 1 0 Median 0.99742 0.85003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8284000 3968400 4315700 4172400 1871800 2300600 4111600 2096500 2015100 0 0 0 0 0 0 0 0 0 0 0 0 10167 1148 10586 50473;50474 50558;50559 50559 2 FVPYYDLFMPSLK VVTSIASVADTAEEKFVPYYDLFMPSLKHI EKFVPYYDLFMPSLKHIVENAVQKELRLLR K F V L K H 0 0 0 1 0 0 0 0 0 0 2 1 1 2 2 1 0 0 2 1 0 0 13 0 1618.8105 O00410;H0Y8C6 O00410 527 539 IPO5 Importin-5 yes no 2 0.00049168 72.2 By MS/MS By MS/MS By matching By matching By matching 3 1 1 1 1 0.86734 0.87511 29.865 7 Median 0.86015 0.82977 3.2419 3 0 Median 1.1466 1.0343 NaN 1 0 Median 1.1711 1.2296 NaN 1 0 Median 0.82178 0.73037 NaN 1 0 Median 1.7566 1.7344 NaN 1 0 Median NaN NaN NaN 0 0 Median 22242000 11597000 10645000 20893000 11054000 9838200 794110 308180 485930 307570 120700 186880 60202 34289 25912 187930 79449 108490 0 0 0 10168 1460 10587 50475;50476;50477;50478;50479;50480;50481 50560;50561;50562;50563 50561 4 FVQCPDGELQK FTRARDYDAMGSQTKFVQCPDGELQKRKEV SQTKFVQCPDGELQKRKEVVHTVSLHEIDV K F V Q K R 0 0 0 1 1 2 1 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1319.618 Q9Y230;M0R0Y3 Q9Y230 224 234 RUVBL2 RuvB-like 2 yes no 2 0.041059 47.198 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10169 4368 10588 50482 50564 50564 1 FVQDLVR NRYEALAKQVASEMRFVQDLVRALEQEKLQ KQVASEMRFVQDLVRALEQEKLQGVECGLR R F V V R A 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 7 0 875.4865 O43293 O43293 433 439 DAPK3 Death-associated protein kinase 3 yes yes 2 0.022813 57.463 By MS/MS By matching 1 1 0.97094 1.0013 35.846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2836 1.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73445 0.77708 NaN 1 0 Median NaN NaN NaN 0 0 Median 6812700 3048800 3763900 0 0 0 0 0 0 3409900 929210 2480600 0 0 0 3402900 2119600 1283300 0 0 0 10170 1564 10589 50483;50484 50565 50565 1 FVQDTLKGDGVTEIR LRGALEMVQMAVEAKFVQDTLKGDGVTEIR FVQDTLKGDGVTEIRMRFIRRIEDNLPAGE K F V I R M 0 1 0 2 0 1 1 2 0 1 1 1 0 1 0 0 2 0 0 2 0 0 15 1 1676.8733 O43617;A0A087WWM0;A0A087WYS5 O43617 150 164 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 2;3 5.3852E-07 138.45 By MS/MS By MS/MS By MS/MS By matching 2 2 4 1 1.247 1.1997 9.6264 8 Median 1.2214 1.1975 0.29078 2 0 Median 1.247 1.1005 1.5972 2 0 Median 1.335 1.3963 8.9975 3 1 Median 1.4767 1.3072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107360000 46904000 60454000 78306000 34447000 43859000 12537000 5330500 7206400 13394000 5742200 7652300 3120300 1384700 1735600 0 0 0 0 0 0 10171 1578 10590 50485;50486;50487;50488;50489;50490;50491;50492;50493 50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576 50568 11 FVQETELSQR LVRRNVELFIATSQKFVQETELSQRIRDWE ATSQKFVQETELSQRIRDWEDTVQPLLQEQ K F V Q R I 0 1 0 0 0 2 2 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 0 1235.6146 H0YC55;A0A0A6YYG7;Q6IBW4 H0YC55 42 51 NCAPH2 Condensin-2 complex subunit H2 yes no 2 0.00095656 69.812 By MS/MS 1 1.2102 1.2466 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2102 1.2466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6713100 2993900 3719200 0 0 0 0 0 0 6713100 2993900 3719200 0 0 0 0 0 0 0 0 0 10172 203 10591 50494 50577 50577 1 FVQLEGAHPLEK PSFQVKELALSALLKFVQLEGAHPLEKSKW LLKFVQLEGAHPLEKSKWEGNYLFPRELFK K F V E K S 1 0 0 0 0 1 2 1 1 0 2 1 0 1 1 0 0 0 0 1 0 0 12 0 1366.7245 Q9BVI4;F5H303 Q9BVI4 125 136 NOC4L Nucleolar complex protein 4 homolog yes no 3 0.00081999 47.189 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1.0549 1.0077 20.145 7 Median 1.1345 1.0966 NaN 1 0 Median 1.1833 0.99159 34.086 2 0 Median 0.71046 0.69985 NaN 1 1 Median 1.1748 1.0105 NaN 1 0 Median 0.97952 0.95493 7.6036 2 0 Median NaN NaN NaN 0 0 Median 47453000 23827000 23626000 4001000 1691100 2309900 11058000 4564500 6493300 7951600 5311500 2640200 1701500 799870 901590 22741000 11460000 11281000 0 0 0 10173 3854 10592 50495;50496;50497;50498;50499;50500;50501 50578;50579;50580;50581;50582 50579 5 FVQLINTVLNGDQHFMSALDK MPTLFVESVLEVHGKFVQLINTVLNGDQHF TVLNGDQHFMSALDKALTSVVNYREPKSVC K F V D K A 1 0 2 2 0 2 0 1 1 1 3 1 1 2 0 1 1 0 0 2 0 0 21 0 2389.21 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 363 383 CUL2 Cullin-2 yes no 3 0.0056054 23.447 By MS/MS 2 1.4356 1.269 11.86 2 Median NaN NaN NaN 0 0 Median 1.4356 1.269 11.86 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3016100 1250900 1765200 0 0 0 3016100 1250900 1765200 0 0 0 0 0 0 0 0 0 0 0 0 10174 196 10593 50502;50503 50583;50584 50584 2 FVQLKPGEKPVPVDQTK VDALLLDLRQKFPPKFVQLKPGEKPVPVDQ QLKPGEKPVPVDQTKKEAEPIPETVKPEEK K F V T K K 0 0 0 1 0 2 1 1 0 0 1 3 0 1 3 0 1 0 0 3 0 0 17 2 1909.0673 A0A087WYL7;G3V4A5;O75586 A0A087WYL7 192 208 MED6 Mediator of RNA polymerase II transcription subunit 6 yes no 3;4 0.00013304 43.798 By MS/MS 3 0.64684 0.66762 15.24 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64684 0.66762 15.24 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13371000 7812400 5558200 0 0 0 0 0 0 13371000 7812400 5558200 0 0 0 0 0 0 0 0 0 10175 82 10594 50504;50505;50506 50585;50586;50587 50585 3 FVQSDDVDYVPEDTVYKK YYYIAAEEISWDYSKFVQSDDVDYVPEDTV SDDVDYVPEDTVYKKVVFRKYLDSTFTKLD K F V K K V 0 0 0 4 0 1 1 0 0 0 0 2 0 1 1 1 1 0 2 4 0 0 18 1 2146.0106 CON__Q28107 CON__Q28107 1587 1604 yes yes 3 0.0018077 42.633 By MS/MS 1 0.21307 0.22318 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21307 0.22318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4247100 3968600 278510 0 0 0 0 0 0 4247100 3968600 278510 0 0 0 0 0 0 0 0 0 + 10176 772 10595 50507 50588 50588 1 FVSAIEGMHPNQEDHETFVDINPLTGIILK PIIMSFPHFYQADERFVSAIEGMHPNQEDH ETFVDINPLTGIILKAAKRFQINIYVKKLD R F V L K A 1 0 2 2 0 1 3 2 2 4 2 1 1 2 2 1 2 0 0 2 0 0 30 0 3363.6809 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PRF6 A0A1W2PPU6 309 338 SCARB2 Lysosome membrane protein 2 yes no 3;4 0.0054263 22.239 By MS/MS By MS/MS 2 3 0.86779 0.81088 19.058 5 Median 0.74285 0.70911 18.966 2 0 Median 0.93531 0.83365 17.79 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21534000 10361000 11174000 8363000 4115300 4247600 13171000 6245200 6926100 0 0 0 0 0 0 0 0 0 0 0 0 10177 340 10596 50508;50509;50510;50511;50512 50589;50590;50591;50592;50593 50592 5 FVSATFR TIQNKELERVIGDCRFVSATFRLFKHSKTG ERVIGDCRFVSATFRLFKHSKTGPTKRCQV R F V F R L 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 1 0 0 7 0 826.43374 A0A087WVD4;Q9HBK9 A0A087WVD4 252 258 AS3MT Arsenite methyltransferase yes no 2 0.032878 62.717 By MS/MS By MS/MS 1 2 1.1306 0.97144 33.725 3 Plateau 0.62204 0.6274 NaN 1 1 Median 0.79352 0.69721 46.91 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5273400 2752200 2521200 1969600 1059300 910280 3303800 1692900 1611000 0 0 0 0 0 0 0 0 0 0 0 0 10178 41 10597 50513;50514;50515 50594;50595 50594 2 FVSEDDR YVYEMRDKLSGEYEKFVSEDDRNSFTLKLE KLSGEYEKFVSEDDRNSFTLKLEDTENWLY K F V D R N 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 7 0 866.37701 P34932;A0A087WYC1 P34932 639 645 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.0061063 94.407 By matching By MS/MS 1 2 1.208 1.0957 7.0185 3 Median 1.1007 1.0957 NaN 1 0 Median 1.2578 1.1056 9.8989 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3736000 1646700 2089300 171820 80560 91256 3564200 1566200 1998000 0 0 0 0 0 0 0 0 0 0 0 0 10179 2230 10598 50516;50517;50518 50596;50597 50597 2 FVSEDDRNSFTLK YVYEMRDKLSGEYEKFVSEDDRNSFTLKLE EKFVSEDDRNSFTLKLEDTENWLYEDGEDQ K F V L K L 0 1 1 2 0 0 1 0 0 0 1 1 0 2 0 2 1 0 0 1 0 0 13 1 1556.7471 P34932;A0A087WYC1 P34932 639 651 HSPA4 Heat shock 70 kDa protein 4 yes no 2;3 4.7711E-06 98.943 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 3 1.1833 1.1867 22.24 15 Median 1.1669 1.2198 32.001 5 0 Median 1.1643 1.0823 4.868 4 0 Median 1.3468 1.5253 13.366 3 0 Median 1.2348 1.1867 9.1057 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 311430000 138740000 172690000 187420000 84438000 102980000 68707000 30996000 37711000 44527000 18484000 26042000 10772000 4820100 5951600 0 0 0 0 0 0 10180 2230 10599 50519;50520;50521;50522;50523;50524;50525;50526;50527;50528;50529;50530;50531;50532;50533 50598;50599;50600;50601;50602;50603;50604;50605;50606;50607;50608;50609;50610;50611 50601 14 FVSEEIER KEWEMWCEELKQEWKFVSEEIEREAIILDN ELKQEWKFVSEEIEREAIILDNLQEELPEI K F V E R E 0 1 0 0 0 0 3 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 1007.4924 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3473 3480 SYNE2 Nesprin-2 yes no 2 0.0024695 121.99 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.0774 1.0052 6.9088 6 Median 0.96323 0.97661 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90882 0.96625 NaN 1 0 Median 1.3073 1.1387 NaN 1 0 Median 0.9765 1.0208 NaN 1 0 Median 1.2576 1.0469 7.9286 2 2 Median 20284000 9864700 10419000 868750 377120 491630 0 0 0 7012100 3494000 3518000 3265000 1383700 1881300 5002900 2806000 2196900 4135400 1803900 2331500 10181 3521 10600 50534;50535;50536;50537;50538;50539 50612;50613;50614;50615;50616;50617 50613 6 FVSELWK LNDNIATLLHQSSDKFVSELWKDVDRIIGL LLHQSSDKFVSELWKDVDRIIGLDQVAGMS K F V W K D 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 7 0 907.48035 P35579 P35579 607 613 MYH9 Myosin-9 yes yes 2 0.048894 53.554 By MS/MS By MS/MS 1 1 1.2468 1.2941 8.8512 2 Median 1.4254 1.3777 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0906 1.2156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15839000 6437800 9401600 12262000 4696700 7565700 0 0 0 3576900 1741000 1835900 0 0 0 0 0 0 0 0 0 10182 2244 10601 50540;50541 50618;50619 50618 2 FVSELWKDVDR LNDNIATLLHQSSDKFVSELWKDVDRIIGL SSDKFVSELWKDVDRIIGLDQVAGMSETAL K F V D R I 0 1 0 2 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 2 0 0 11 1 1392.7038 P35579 P35579 607 617 MYH9 Myosin-9 yes yes 3 0.0078968 48.004 By MS/MS 1 0.15244 0.15341 NaN 1 Median 0.15244 0.15341 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8385900 6519300 1866600 8385900 6519300 1866600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10183 2244 10602 50542 50620 50620 1 FVSFLGR QPPIDNIIRAGLIPKFVSFLGRTDCSPIQF IRAGLIPKFVSFLGRTDCSPIQFESAWALT K F V G R T 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 7 0 824.45447 P52292;J3QLL0;J3KS65 P52292 124 130 KPNA2 Importin subunit alpha-1 yes no 2 0.012912 77.374 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 3 1 2 3 1.5689 1.4646 18.979 13 Median 1.833 1.7962 10.456 3 0 Plateau 1.3054 1.1362 NaN 1 0 Median 1.4067 1.3139 16.664 3 0 Median 1.5689 1.3755 NaN 1 0 Median 1.7667 1.7596 15.315 2 0 Median 1.3272 1.142 19.618 3 0 Median 50341000 18632000 31709000 9541900 3388300 6153500 1321500 512650 808810 24757000 9223500 15534000 214830 79345 135480 8884900 3143200 5741700 5620700 2285300 3335400 10184 2448 10603 50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555 50621;50622;50623;50624;50625;50626 50625 6 FVSFPTQVLAK LSNVLSSWCQYEALKFVSFPTQVLAKASKV EALKFVSFPTQVLAKASKVIPVMLMGKLVS K F V A K A 1 0 0 0 0 1 0 0 0 0 1 1 0 2 1 1 1 0 0 2 0 0 11 0 1235.6914 Q8TB61 Q8TB61 206 216 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.018998 35.445 By MS/MS 2 0.86628 0.77171 1.653 2 Median NaN NaN NaN 0 0 Median 0.86628 0.77171 1.653 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4991400 3157700 1833700 0 0 0 4991400 3157700 1833700 0 0 0 0 0 0 0 0 0 0 0 0 10185 3458 10604 50556;50557 50627 50627 1 FVSNITR APRACQLSVVVDDKKFVSNITRLSSGPFRT SVVVDDKKFVSNITRLSSGPFRTITVRDTM K F V T R L 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 7 0 835.4552 P26358;K7ENW7 P26358 1350 1356 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0061063 94.407 By matching By MS/MS By MS/MS By matching 1 1 3 1 1.0173 0.91799 15.15 6 Median NaN NaN NaN 0 0 Median 1.0678 0.93435 NaN 1 0 Median 1.0049 1.0998 NaN 1 0 Median 1.0654 0.93736 10.681 3 0 Plateau NaN NaN NaN 0 0 Median 0.87182 0.72411 NaN 1 0 Median 14180000 7163600 7016500 0 0 0 295330 163830 131500 8673700 4382200 4291500 4770800 2375900 2395000 0 0 0 440250 241670 198580 10186 2142 10605 50558;50559;50560;50561;50562;50563 50628;50629;50630 50629 3 FVSSSSSGGYGGGYGGVLTASDGLLAGNEK HGGSGGRGVSVSSARFVSSSSSGGYGGGYG GVLTASDGLLAGNEKLTMQNLNDRLASYLD R F V E K L 2 0 1 1 0 0 1 9 0 0 3 1 0 1 0 6 1 0 2 2 0 0 30 0 2793.3093 CON__P08727 CON__P08727 52 81 yes yes 2;3 3.2728E-58 133.93 By MS/MS By MS/MS By matching By MS/MS 2 3 2 6 1.0542 1.0371 20.809 13 Median 0.94135 0.88886 8.9272 2 0 Median NaN NaN NaN 0 0 Median 1.0058 1.0371 31.374 3 1 Plateau 1.431 1.2115 7.9115 2 0 Median 1.189 1.1867 10.575 6 1 Median NaN NaN NaN 0 0 Median 107030000 51748000 55282000 8522700 3998300 4524400 0 0 0 74104000 37142000 36962000 718380 309690 408690 23685000 10298000 13386000 0 0 0 + 10187 752 10606 50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576 50631;50632;50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643;50644 50635 14 FVSTTSQNTQLVRPPIR TVKSNRSSNMTATTKFVSTTSQNTQLVRPP STTSQNTQLVRPPIRSHHSNTRDTVKQGIS K F V I R S 0 2 1 0 0 2 0 0 0 1 1 0 0 1 2 2 3 0 0 2 0 0 17 1 1943.0589 Q8WWK9 Q8WWK9 242 258 CKAP2 Cytoskeleton-associated protein 2 yes yes 3 9.5742E-06 53.995 By MS/MS By MS/MS By matching By matching 3 5 2 1 0.8535 0.80509 51.183 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72146 0.80509 35.415 3 0 Median 3.3415 3.1025 70.345 5 2 Linear 0.81345 0.87756 55.676 2 0 Median 1.0501 0.92841 NaN 1 0 Median 41970000 19699000 22271000 0 0 0 0 0 0 19067000 9986500 9080300 9117200 3206500 5910600 10196000 5352000 4844500 3589400 1153600 2435900 10188 3510 10607 50577;50578;50579;50580;50581;50582;50583;50584;50585;50586;50587 50645;50646;50647 50645 3 FVSTTYSGVTR SSGGVKSSGGSSSVKFVSTTYSGVTR____ SSVKFVSTTYSGVTR_______________ K F V T R - 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 2 3 0 1 2 0 0 11 0 1216.6088 P04264;CON__P04264 P04264 634 644 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.0031605 73.985 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2424800 2424800 0 2424800 2424800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10189 1848 10608 50588 50648 50648 1 FVTDSNAVVQLK EKSPEWSKFLGLIKKFVTDSNAVVQLKGLE IKKFVTDSNAVVQLKGLEAALVYVENAHVA K F V L K G 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 3 0 0 12 0 1319.7085 Q14008;E9PQH5 Q14008 56 67 CKAP5 Cytoskeleton-associated protein 5 yes no 2 4.0665E-06 105.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 4 1 3 1.1927 1.0244 25.03 15 Median 0.88885 0.8562 NaN 1 0 Median 1.0034 0.88994 31.558 3 0 Median 1.2418 1.3636 28.444 3 0 Plateau 1.2175 1.0693 21.732 4 0 Median 1.624 1.7074 NaN 1 1 Median 1.1947 1.0096 8.284 3 0 Plateau 136040000 61768000 74268000 18464000 9316400 9147600 5136700 2337000 2799700 77295000 34674000 42621000 28876000 12789000 16087000 3617700 1457100 2160600 2646600 1194600 1452000 10190 2850 10609 50589;50590;50591;50592;50593;50594;50595;50596;50597;50598;50599;50600;50601;50602;50603;50604 50649;50650;50651;50652;50653;50654;50655;50656;50657;50658;50659;50660;50661;50662;50663;50664 50651 16 FVTETLEDGSR STLQKDCSWIEMIRKFVTETLEDGSRLNSK MIRKFVTETLEDGSRLNSKQLNRLLGVSWR K F V S R L 0 1 0 1 0 0 2 1 0 0 1 0 0 1 0 1 2 0 0 1 0 0 11 0 1252.5935 Q9NXF1;A0A0A0MSR3 Q9NXF1 463 473 TEX10 Testis-expressed sequence 10 protein yes no 2 3.6058E-05 120.99 By MS/MS By MS/MS 1 1 1.4394 1.3763 28.099 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0634 1.1283 NaN 1 1 Median 1.9485 1.6788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14426000 7737000 6688800 0 0 0 0 0 0 12600000 7228000 5372000 1825900 509030 1316800 0 0 0 0 0 0 10191 4163 10610 50605;50606 50665;50666 50665 2 FVTHVSDWGALATISTLEAVR LPPLPPREDAARVARFVTHVSDWGALATIS DWGALATISTLEAVRGRPFADVLSLSDGPP R F V V R G 3 1 0 1 0 0 1 1 1 1 2 0 0 1 0 2 3 1 0 3 0 0 21 0 2272.1852 A0A3B3IRL2;O75629 A0A3B3IRL2 61 81 CREG1 Protein CREG1 yes no 3 0.058461 7.712 By MS/MS 1 1.4726 1.2588 NaN 1 Median NaN NaN NaN 0 0 Median 1.4726 1.2588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 526320 210490 315830 0 0 0 526320 210490 315830 0 0 0 0 0 0 0 0 0 0 0 0 10192 412 10611 50607 50667 50667 1 FVTISGQK GSFSEDVISHKGDLRFVTISGQKVLDMENS SHKGDLRFVTISGQKVLDMENSFKEGKEPS R F V Q K V 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 8 0 878.48617 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 3936 3943 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.022207 45.081 By MS/MS By MS/MS By matching 1 1 1 1.0911 0.95105 46.476 3 Median 0.59811 0.59119 NaN 1 0 Median 1.0911 0.95105 NaN 1 0 Median 1.3609 1.4975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6764400 3014200 3750200 1706200 1020600 685580 3670800 1327400 2343400 1387400 666170 721280 0 0 0 0 0 0 0 0 0 10193 1220 10612 50608;50609;50610 50668;50669 50669 2 FVTLLYR VNLVVMPPTRARSLRFVTLLYRHGDRSPVK PTRARSLRFVTLLYRHGDRSPVKTYPKDPY R F V Y R H 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 7 0 910.52764 E9PHY0;P11117 E9PHY0 35 41 ACP2 Lysosomal acid phosphatase yes no 2 0.053242 38.792 By MS/MS 1 1.2054 1.1837 NaN 1 Median 1.2054 1.1837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936600 1646100 2290500 3936600 1646100 2290500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10194 938 10613 50611 50670 50670 1 FVTLSATNAK LAHIIASNSKKHSIRFVTLSATNAKTNDVR KHSIRFVTLSATNAKTNDVRDVIKQAQNEK R F V A K T 2 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1050.571 Q96S55 Q96S55 292 301 WRNIP1 ATPase WRNIP1 yes yes 2 0.023211 51.066 By MS/MS 1 0.9353 0.91455 NaN 1 Median 0.9353 0.91455 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2566100 1352500 1213700 2566100 1352500 1213700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10195 3730 10614 50612 50671 50671 1 FVTSNTQELGK AQKMGRKDPEQEVEKFVTSNTQELGKDKWL EVEKFVTSNTQELGKDKWLCPLSGKKFKGP K F V G K D 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1222.6194 Q9BXP5;H7C3A1 Q9BXP5 700 710 SRRT Serrate RNA effector molecule homolog yes no 2 0.00015337 109.44 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1548 1.0964 11.642 4 Median 1.2217 1.2194 NaN 1 0 Median 1.0915 0.92252 NaN 1 0 Median 0.99275 1.0769 NaN 1 0 Median 1.2855 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27098000 12863000 14235000 2001500 1007000 994480 13751000 6943600 6807600 4757000 2254500 2502500 6588200 2657600 3930500 0 0 0 0 0 0 10196 3879 10615 50613;50614;50615;50616 50672;50673;50674;50675;50676 50676 5 FVTSNTQELGKDK AQKMGRKDPEQEVEKFVTSNTQELGKDKWL EKFVTSNTQELGKDKWLCPLSGKKFKGPEF K F V D K W 0 0 1 1 0 1 1 1 0 0 1 2 0 1 0 1 2 0 0 1 0 0 13 1 1465.7413 Q9BXP5;H7C3A1 Q9BXP5 700 712 SRRT Serrate RNA effector molecule homolog yes no 3 0.020866 23.842 By MS/MS 2 1.3872 1.656 36.472 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3872 1.656 36.472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4170400 2043600 2126800 0 0 0 0 0 0 4170400 2043600 2126800 0 0 0 0 0 0 0 0 0 10197 3879 10616 50617;50618 50677 50677 1 FVTSTSDHFVEGQTVAAK SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV STSDHFVEGQTVAAKVTNVDEEKQRMLLSL K F V A K V 2 0 0 1 0 1 1 1 1 0 0 1 0 2 0 2 3 0 0 3 0 0 18 0 1922.9374 Q14690;A0A3B3IUD7 Q14690 765 782 PDCD11 Protein RRP5 homolog yes no 3 1.3998E-06 73.464 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2143 1.0799 12.186 6 Median NaN NaN NaN 0 0 Median 1.5384 1.3641 NaN 1 0 Median 0.93836 1.0185 0.37741 2 0 Median 1.2854 1.1536 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.259 1.0595 10.587 2 1 Median 76428000 35715000 40712000 0 0 0 5397800 2346100 3051700 55670000 27067000 28603000 12220000 5175600 7044500 0 0 0 3140100 1126600 2013500 10198 448 10617 50619;50620;50621;50622;50623;50624 50678;50679;50680;50681;50682;50683;50684;50685 50680 8 FVTVQTISGTGALR ELALGENSEVLKSGRFVTVQTISGTGALRI RFVTVQTISGTGALRIGASFLQRFFKFSRD R F V L R I 1 1 0 0 0 1 0 2 0 1 1 0 0 1 0 1 3 0 0 2 0 0 14 0 1448.7987 P00505 P00505 126 139 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2;3 7.2188E-43 221.23 By MS/MS By MS/MS By MS/MS 5 5 3 1.1109 1.1058 14.327 12 Median 1.082 1.095 20.828 5 3 Median 1.3796 1.1904 8.3245 4 1 Median 1.0885 1.1051 5.1242 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 475070000 222510000 252560000 350760000 164160000 186600000 17545000 7191300 10354000 106760000 51155000 55610000 0 0 0 0 0 0 0 0 0 10199 1823 10618 50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637 50686;50687;50688;50689;50690;50691;50692;50693;50694;50695;50696;50697;50698;50699;50700;50701;50702 50688 16 FVVDLSDQVAPTDIEEGMR SEDPKYIINVKQFAKFVVDLSDQVAPTDIE LSDQVAPTDIEEGMRVGVDRNKYQIHIPLP K F V M R V 1 1 0 3 0 1 2 1 0 1 1 0 1 1 1 1 1 0 0 3 0 0 19 0 2120.0096 P35998 P35998 121 139 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.039902 21.251 By MS/MS By matching 1 1 0.89894 0.84245 13.131 2 Median NaN NaN NaN 0 0 Median 0.88142 0.76775 NaN 1 0 Median 0.91681 0.92442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673800 1801400 1872400 0 0 0 1195600 626460 569120 2478200 1174900 1303300 0 0 0 0 0 0 0 0 0 10200 2253 10619 50638;50639 50703 50703 1 FVVDVDK MDKKKVLVKVHPEGKFVVDVDKNIDINDVT VKVHPEGKFVVDVDKNIDINDVTPNCRVAL K F V D K N 0 0 0 2 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 3 0 0 7 0 820.43307 P62195;J3QSA9;J3KRP2;J3QLH6;J3QRW1 P62195 95 101 PSMC5 26S protease regulatory subunit 8 yes no 2 0.029709 50.127 By MS/MS 1 1.0371 0.89332 NaN 1 Median NaN NaN NaN 0 0 Median 1.0371 0.89332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2987300 1569700 1417600 0 0 0 2987300 1569700 1417600 0 0 0 0 0 0 0 0 0 0 0 0 10201 2572 10620 50640 50704 50704 1 FVVEKAEQQKK VEAKQVAQQEAERARFVVEKAEQQKKAAII ERARFVVEKAEQQKKAAIISAEGDSKAAEL R F V K K A 1 0 0 0 0 2 2 0 0 0 0 3 0 1 0 0 0 0 0 2 0 0 11 2 1332.7402 P35232;C9JW96;E9PCW0 P35232 198 208 PHB Prohibitin yes no 3 0.024755 24.343 By matching By MS/MS By matching 1 1 1 1.3923 1.3742 14.679 3 Median 1.0917 1.1403 NaN 1 0 Median 1.4043 1.3742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3923 1.5234 NaN 1 0 Median NaN NaN NaN 0 0 Median 1399000 530510 868510 468940 209110 259830 697630 237000 460630 0 0 0 0 0 0 232440 84390 148050 0 0 0 10202 2233 10621 50641;50642;50643 50705 50705 1 FVVELQQR QTMGLSIRTPEDLSRFVVELQQRELALKDK TPEDLSRFVVELQQRELALKDKNSAVTSSA R F V Q R E 0 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 8 0 1017.5607 Q9Y6D9 Q9Y6D9 337 344 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes yes 2 0.0027345 105.39 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2464 1.1428 16.473 4 Median 1.1301 1.0815 NaN 1 0 Median 1.0135 0.87945 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4941 1.2774 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3747 1.2075 NaN 1 0 Median 8554500 3476500 5077900 5134600 1909800 3224700 2452300 1209200 1243000 0 0 0 651550 234470 417080 0 0 0 316070 123000 193060 10203 4490 10622 50644;50645;50646;50647 50706;50707;50708 50707 3 FVVGSHVR VRDTVDPVQDEMLARFVVGSHVRHHPSNKE QDEMLARFVVGSHVRHHPSNKEEEGLANGS R F V V R H 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 3 0 0 8 0 899.49774 P49736;H0Y8E6 P49736 678 685 MCM2 DNA replication licensing factor MCM2 yes no 2 0.0024054 117.93 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0728 1.0957 13.219 5 Median 0.99627 0.96117 NaN 1 0 Median 1.4238 1.2009 12.965 2 0 Median 0.88392 0.94962 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0728 1.1034 NaN 1 0 Median NaN NaN NaN 0 0 Median 81090000 36270000 44820000 8181400 4079800 4101600 68109000 29599000 38511000 3210700 1600100 1610600 0 0 0 1588700 991540 597170 0 0 0 10204 2393 10623 50648;50649;50650;50651;50652 50709;50710;50711;50712;50713;50714 50712 6 FVVLETGGEAGITR EPQLCEVLQVAGPDRFVVLETGGEAGITRS RFVVLETGGEAGITRSVVATTRARVCRRKY R F V T R S 1 1 0 0 0 0 2 3 0 1 1 0 0 1 0 0 2 0 0 2 0 0 14 0 1447.7671 Q7Z2W4;C9J6P4 Q7Z2W4 49 62 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 2 6.5451E-08 101.93 By MS/MS By matching By matching 1 1 1 1.0435 0.97913 17.339 3 Median 1.0435 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7473 0.73809 NaN 1 0 Median 1.1636 0.97913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6389800 3374200 3015600 3567700 1686300 1881400 0 0 0 2522200 1569700 952460 299940 118220 181720 0 0 0 0 0 0 10205 3236 10624 50653;50654;50655 50715 50715 1 FVVPKPR MKFACFERTVEALYKFVVPKPRSECSKPEQ RTVEALYKFVVPKPRSECSKPEQLVVTFVA K F V P R S 0 1 0 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 7 1 841.51741 Q00325;F8VVM2 Q00325 248 254 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.0082304 109.88 By matching By MS/MS By matching By matching 2 3 3 1 0.96123 1.0624 23.246 9 Median 0.7924 0.81374 3.3218 2 0 Median 1.2451 1.1793 21.809 3 0 Median 0.85354 0.87469 11.762 3 0 Median 1.2053 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65354000 30619000 34735000 10344000 5708000 4636100 51075000 22889000 28186000 2967000 1552900 1414100 968210 469000 499210 0 0 0 0 0 0 10206 2674 10625 50656;50657;50658;50659;50660;50661;50662;50663;50664 50716 50716 1 FVVQNVSAQK SDPQGVPYPEAKIGRFVVQNVSAQKDGEKS AKIGRFVVQNVSAQKDGEKSRVKVKVRVNT R F V Q K D 1 0 1 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 3 0 0 10 0 1118.6084 Q92598;A0A0A0MSM0 Q92598 462 471 HSPH1 Heat shock protein 105 kDa yes no 2 0.00072409 102.51 By matching By MS/MS By matching 1 1 1 1.148 1.1102 37.238 3 Median 1.148 1.1102 NaN 1 0 Median 0.94083 0.82183 NaN 1 0 Median 1.5973 1.7233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11433000 5562600 5870100 1824200 787700 1036500 7147700 3839300 3308400 2460800 935600 1525200 0 0 0 0 0 0 0 0 0 10207 3541 10626 50665;50666;50667 50717;50718 50718 2 FVVTAPPAR ______________________________ ______________________________ R F V A R N 2 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 2 0 0 9 0 956.54435 Q9UFW8;C9JUJ0 Q9UFW8 4 12 CGGBP1 CGG triplet repeat-binding protein 1 yes no 2 0.00094593 89.142 By MS/MS By MS/MS By matching 2 2 1 0.87085 0.68567 46.49 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0874 1.1256 71.243 2 0 Median 0.82695 0.66902 3.4777 2 0 Median 1.1374 1.2025 NaN 1 0 Median NaN NaN NaN 0 0 Median 56171000 31050000 25121000 0 0 0 0 0 0 44577000 24991000 19587000 10320000 5524500 4795500 1274100 535010 739080 0 0 0 10208 4260 10627 50668;50669;50670;50671;50672 50719;50720;50721;50722;50723 50719 5 FVYKEEHPFEK ______________________________ ______________________________ K F V E K R 0 0 0 0 0 0 3 0 1 0 0 2 0 2 1 0 0 0 1 1 0 0 11 1 1451.7085 H6UMI1;O95166;I3L3J4 H6UMI1 3 13 GABARAP Gamma-aminobutyric acid receptor-associated protein yes no 3 4.5504E-05 89.805 By matching By MS/MS By MS/MS 1 1 1 1.0458 0.97939 11.087 3 Median 1.0458 0.97939 NaN 1 0 Median 1.0067 0.87272 NaN 1 0 Median 1.0772 1.0893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23454000 10984000 12471000 871900 448410 423500 10091000 4848000 5243200 12491000 5687300 6804200 0 0 0 0 0 0 0 0 0 10209 1241 10628 50673;50674;50675 50724;50725;50726 50724 3 FVYVWDTTSR WSPDGSKIAAGSADRFVYVWDTTSRRILYK GSADRFVYVWDTTSRRILYKLPGHAGSINE R F V S R R 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 2 1 1 2 0 0 10 0 1272.6139 Q96DI7;Q9NSS8 Q96DI7 308 317 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2 0.00037046 103.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 4 3 1.169 1.0931 11.119 14 Median 1.0822 1.075 NaN 1 0 Median 1.3939 1.2206 NaN 1 0 Median 1.043 1.0718 7.383 3 0 Plateau 1.3725 1.1764 1.6122 2 0 Median 1.1434 1.1842 11.36 4 0 Median 1.2994 0.97851 11.021 3 0 Plateau 74316000 35264000 39053000 7663600 3647000 4016600 671850 291480 380370 47643000 22890000 24753000 2458600 1038500 1420200 13465000 6392800 7072500 2414600 1003900 1410700 10210 3627 10629 50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689 50727;50728;50729;50730;50731;50732;50733;50734;50735;50736;50737 50730 11 FVYVWDTTSRR WSPDGSKIAAGSADRFVYVWDTTSRRILYK SADRFVYVWDTTSRRILYKLPGHAGSINEV R F V R R I 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 1 2 1 1 2 0 0 11 1 1428.715 Q96DI7;Q9NSS8 Q96DI7 308 318 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2;3 0.0001106 91.549 By matching By MS/MS By matching 1 3 1 1.2085 1.2927 23.822 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72172 0.75315 NaN 1 0 Median 1.2085 1.2927 6.9161 3 1 Median 1.4768 1.2989 NaN 1 0 Median 25198000 12014000 13184000 0 0 0 0 0 0 0 0 0 215260 121600 93659 24528000 11704000 12824000 454530 188210 266320 10211 3627 10630 50690;50691;50692;50693;50694 50738;50739;50740 50740 3 FWAYEQYKK NGTNVIKIAPETAVKFWAYEQYKKLLTEEG PETAVKFWAYEQYKKLLTEEGQKIGTFERF K F W K K L 1 0 0 0 0 1 1 0 0 0 0 2 0 1 0 0 0 1 2 0 0 0 9 1 1261.6132 Q6NUK1 Q6NUK1 269 277 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.025826 41.029 By MS/MS 1 0.90906 0.87282 NaN 1 Median 0.90906 0.87282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5023600 2538900 2484700 5023600 2538900 2484700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10212 3143 10631 50695 50741 50741 1 FWDASGVALRPLYK QRGLLLTGHEDGTVRFWDASGVALRPLYKL RFWDASGVALRPLYKLSTAGLFQTDCEHAD R F W Y K L 2 1 0 1 0 0 0 1 0 0 2 1 0 1 1 1 0 1 1 1 0 0 14 1 1621.8617 A0A087WW77;Q15334 A0A087WW77 459 472 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 3 0.0012715 38.366 By MS/MS 1 0.69775 0.71981 NaN 1 Median 0.69775 0.71981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6132500 3359000 2773500 6132500 3359000 2773500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10213 55 10632 50696 50742 50742 1 FWDFAGMDASFK SGARLVTGGYDYDVKFWDFAGMDASFKAFR DVKFWDFAGMDASFKAFRSLQPCECHQIKS K F W F K A 2 0 0 2 0 0 0 1 0 0 0 1 1 3 0 1 0 1 0 0 0 0 12 0 1420.6122 Q9NW82;D6RIW8 Q9NW82 208 219 WDR70 WD repeat-containing protein 70 yes no 2 0.046772 25.938 By MS/MS By matching 2 2 1.1378 1.1216 18.969 4 Median 1.1378 1.1216 10.702 2 0 Median 1.1966 1.07 30.706 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1742300 825400 916880 1397500 664200 733260 344820 161200 183620 0 0 0 0 0 0 0 0 0 0 0 0 10214 4147 10633 50697;50698;50699;50700 50743 50743 1 FWEGDFHR GCDVTDNSIFSKLPKFWEGDFHRDMEALNV IFSKLPKFWEGDFHRDMEALNVLPPDVLTR K F W H R D 0 1 0 1 0 0 1 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 8 0 1092.4777 P49589;B4DKY1 P49589 218 225 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.0071131 68.422 By MS/MS By MS/MS By MS/MS 1 1 1 1.091 1.0508 8.1102 3 Plateau 1.091 1.0508 NaN 1 0 Median 1.0219 0.89968 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1753 1.0126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7461000 3463100 3997900 4144000 1857200 2286700 1422900 749490 673420 0 0 0 1894200 856390 1037800 0 0 0 0 0 0 10215 2386 10634 50701;50702;50703 50744;50745;50746;50747 50747 4 FWEQSVR PNTMLFASEACVGSKFWEQSVRLGSWDRGM SEACVGSKFWEQSVRLGSWDRGMQYSHSII K F W V R L 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 7 0 950.46102 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 299 305 GBA Glucosylceramidase yes no 2 0.021555 60.788 By MS/MS By MS/MS 1 1 0.91051 0.8384 10.557 2 Median 0.92277 0.90339 NaN 1 1 Median 0.89842 0.77809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8998300 4196400 4801900 4224300 1997700 2226600 4774000 2198700 2575300 0 0 0 0 0 0 0 0 0 0 0 0 10216 281 10635 50704;50705 50748;50749 50749 2 FWESPETVSQLDSVR GLAVYRRKDGGPATKFWESPETVSQLDSVR FWESPETVSQLDSVRVWLGKHYKKYVHADA K F W V R V 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 1 1 0 2 0 0 15 0 1778.8475 Q92922;F8WE13 Q92922 42 56 SMARCC1 SWI/SNF complex subunit SMARCC1 yes no 2 1.6487E-07 97.911 By MS/MS By MS/MS 1 3 1.1126 1.1546 25.67 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8862 0.97417 NaN 1 0 Median 1.2803 1.3685 29.579 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24093000 12702000 11391000 0 0 0 0 0 0 21907000 11607000 10300000 2185600 1094900 1090700 0 0 0 0 0 0 10217 3567 10636 50706;50707;50708;50709 50750;50751;50752;50753;50754 50752 5 FWETLDR LSYHKRHLDRPVFLRFWETLDRYMVKHKSH LDRPVFLRFWETLDRYMVKHKSHLRF____ R F W D R Y 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 7 0 965.46068 Q6P1J9;A0A1B0GUB2 Q6P1J9 514 520 CDC73 Parafibromin yes no 2 0.009327 84.244 By matching By MS/MS By MS/MS 2 1 1 1.1478 1.0593 28.002 4 Median NaN NaN NaN 0 0 Median 1.4102 1.2459 45.624 2 0 Median 1.0233 1.0389 NaN 1 0 Median 1.2866 1.08 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9352800 4323300 5029600 0 0 0 966460 392990 573470 7677100 3616100 4061000 709330 314220 395110 0 0 0 0 0 0 10218 3150 10637 50710;50711;50712;50713 50755;50756;50757 50756 3 FWEVISDEHGIDPAGGYVGDSALQLER VHIQAGQCGNQIGTKFWEVISDEHGIDPAG PAGGYVGDSALQLERINVYYNESSSQKYVP K F W E R I 2 1 0 3 0 1 3 4 1 2 2 0 0 1 1 2 0 1 1 2 0 0 27 0 2959.3988 Q9BUF5;K7ESM5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 20 46 TUBB6 Tubulin beta-6 chain yes no 3 0.0052564 24.096 By MS/MS 1 0.89101 0.89805 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89101 0.89805 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2274200 872080 1402100 0 0 0 0 0 0 2274200 872080 1402100 0 0 0 0 0 0 0 0 0 10219 3838 10638 50714 50758 50758 1 FWEVISDEHGIDPTGTYHGDSDLQLDR ______________________________ PTGTYHGDSDLQLDRISVYYNEATGGKYVP M F W D R I 0 1 0 5 0 1 2 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3101.4003 Q5JP53;P07437 Q5JP53 2 28 TUBB Tubulin beta chain yes no 4 2.5765E-09 48.685 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1033 1.0077 21.571 4 Median NaN NaN NaN 0 0 Median 0.96593 0.81066 NaN 1 0 Median 0.9045 0.87604 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2602 1.2688 NaN 1 1 Median 1.3176 1.1591 NaN 1 0 Median 88737000 42765000 45973000 0 0 0 25333000 11513000 13820000 59907000 30119000 29788000 0 0 0 3197700 1009900 2187800 299120 122950 176170 10220 1887 10639 50715;50716;50717;50718 50759;50760;50761 50759 3 FWEVISDEHGIDPTGTYHGDSDLQLER VHLQAGQCGNQIGAKFWEVISDEHGIDPTG PTGTYHGDSDLQLERINVYYNEATGGKYVP K F W E R I 0 1 0 4 0 1 3 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3115.4159 P04350;M0R2D3;M0QY85;M0R278;M0R0X0;M0QY37;M0QX14;M0QZL7;M0QYM7;P68371 P68371 20 46 TUBB4A;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 3;4 1.0533E-20 73.696 By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 0.6599 0.59657 24.399 8 Median 0.51079 0.50852 NaN 1 0 Median 0.81062 0.69107 0.13702 2 0 Median 0.60638 0.5911 28.628 2 0 Median 0.58652 0.51196 0.97534 2 0 Median 0.95545 0.96311 NaN 1 0 Median NaN NaN NaN 0 0 Median 96480000 49414000 47066000 1903800 1164000 739850 20027000 8043800 11983000 69006000 37166000 31840000 2966600 1959200 1007500 2576600 1081500 1495100 0 0 0 10221 2634;1849 10640 50719;50720;50721;50722;50723;50724;50725;50726 50762;50763;50764;50765;50766;50767;50768 50767 7 FWFAHNVLFNVSNR YDALCILLRHSKNVRFWFAHNVLFNVSNRF RFWFAHNVLFNVSNRFSEYLLECPSAEVRG R F W N R F 1 1 3 0 0 0 0 0 1 0 1 0 0 3 0 1 0 1 0 2 0 0 14 0 1749.874 Q93008 Q93008 2086 2099 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 0.0004518 69.979 By MS/MS By matching By matching 4 2 1 1.2561 1.2588 20.603 7 Median 1.4228 1.4101 14.452 4 0 Median 1.3605 1.1826 17.32 2 0 Median NaN NaN NaN 0 0 Median 1.0523 0.91868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7374800 3288800 4086000 4452800 1953700 2499100 2846600 1303200 1543400 0 0 0 75378 31822 43556 0 0 0 0 0 0 10222 3573 10641 50727;50728;50729;50730;50731;50732;50733 50769;50770 50770 2 FWHDTCFR KPIGADSKEVHYKNRFWHDTCFRCAKCLHP EVHYKNRFWHDTCFRCAKCLHPLANETFVA R F W F R C 0 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 8 0 1167.492 Q5JXI8 Q5JXI8 60 67 FHL1 no no 2 0.005683 74.415 By MS/MS By MS/MS 1 1 1.3029 1.1495 10.473 2 Median 1.3222 1.2379 NaN 1 0 Median 1.2838 1.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43804000 19473000 24330000 15424000 6558800 8865200 28380000 12914000 15465000 0 0 0 0 0 0 0 0 0 0 0 0 10223 3060 10642 50734;50735 50771;50772;50773 50773 3 FWKEVVEQGLLK LDLLRLALKEDKFPRFWKEVVEQGLLKMQF FPRFWKEVVEQGLLKMQFWPASYLCFRLLG R F W L K M 0 0 0 0 0 1 2 1 0 0 2 2 0 1 0 0 0 1 0 2 0 0 12 1 1474.8184 Q9BQG0;I3L1L3 Q9BQG0 284 295 MYBBP1A Myb-binding protein 1A yes no 2 0.0021751 78.098 By MS/MS By matching 1 1 1.5283 1.6733 25.456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7454 2.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3382 1.3976 NaN 1 0 Median NaN NaN NaN 0 0 Median 6037200 2066000 3971300 0 0 0 0 0 0 5040500 1712400 3328100 0 0 0 996720 353530 643200 0 0 0 10224 3789 10643 50736;50737 50774 50774 1 FWNSIVMQR ERCSTYFLRYKNCRRFWNSIVMQRRKNGVK YKNCRRFWNSIVMQRRKNGVKPFMPTAAER R F W Q R R 0 1 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 9 0 1179.5859 J3KPV1;Q9BUK0 J3KPV1 59 67 CHCHD7 Coiled-coil-helix-coiled-coil-helix domain-containing protein 7 yes no 2 0.0017857 77.674 By MS/MS By matching By matching 1 1 1 1.2913 1.3087 38.257 3 Median 0.86008 0.84057 NaN 1 0 Median 2.1354 1.8006 NaN 1 0 Median 1.2913 1.3087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4100700 1884700 2216100 2088300 996560 1091800 79213 29136 50077 1933200 858960 1074200 0 0 0 0 0 0 0 0 0 10225 1312 10644 50738;50739;50740 50775 50775 1 FWSLEDGLNR FDGLLGFPGGFVDRRFWSLEDGLNRVLGLG FVDRRFWSLEDGLNRVLGLGLGCLRLTEAD R F W N R V 0 1 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 10 0 1235.5935 Q9BRJ7;K7EIN2;K7ENA3;W4VSQ8 Q9BRJ7 71 80 NUDT16L1 Protein syndesmos yes no 2 0.0070645 48.283 By MS/MS By matching 1 1 1.1836 1.1931 7.1649 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3065 1.2551 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0723 1.1342 NaN 1 0 Median NaN NaN NaN 0 0 Median 15900000 6464000 9436100 0 0 0 0 0 0 14269000 5739400 8529800 0 0 0 1630900 724600 906300 0 0 0 10226 3796 10645 50741;50742 50776;50777 50777 2 FWTVADTVK ASANEILGSLRWRDRFWTVADTVKVDAPGL LRWRDRFWTVADTVKVDAPGLALLALHWHW R F W V K V 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 2 0 0 9 0 1065.5495 Q9NU22 Q9NU22 2727 2735 MDN1 Midasin yes yes 2 0.0027865 69.598 By MS/MS By matching 1 1 1.1383 1.1268 0.16947 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0557 1.1281 NaN 1 0 Median 1.2275 1.1254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13643000 6664500 6978700 0 0 0 0 0 0 13288000 6521300 6767100 354910 143280 211630 0 0 0 0 0 0 10227 4112 10646 50743;50744 50778;50779 50778 2 FWYFVSQLKK ______________________________ VAKSRFWYFVSQLKKMKKSSGEIVYCGQVF R F W K K M 0 0 0 0 0 1 0 0 0 0 1 2 0 2 0 1 0 1 1 1 0 0 10 1 1344.723 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 15 24 RPL18A 60S ribosomal protein L18a yes no 3 0.0027822 42.336 By MS/MS By matching By matching 2 1 1 1.3324 1.29 27.282 4 Median 1.0956 1.0695 32.132 2 0 Median 1.3459 1.2397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4219 1.6348 NaN 1 0 Median NaN NaN NaN 0 0 Median 7581500 3196400 4385000 5704300 2466800 3237500 179740 73532 106200 0 0 0 0 0 0 1697400 656140 1041300 0 0 0 10228 1433 10647 50745;50746;50747;50748 50780;50781 50780 2 FYAGGSER IHDQDEDEEEEEGQRFYAGGSERSGQQIVG EEEEGQRFYAGGSERSGQQIVGPPRKKSPN R F Y E R S 1 1 0 0 0 0 1 2 0 0 0 0 0 1 0 1 0 0 1 0 0 0 8 0 885.39808 Q9UNZ2;F2Z2K0 Q9UNZ2 94 101 NSFL1C NSFL1 cofactor p47 yes no 2 0.011256 57.281 By matching By MS/MS 1 1 1.1663 1.0863 15.664 2 Median 0.96745 0.97238 NaN 1 0 Median 1.4061 1.2135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3100800 1419500 1681300 142660 72564 70094 2958100 1346900 1611200 0 0 0 0 0 0 0 0 0 0 0 0 10229 4353 10648 50749;50750 50782;50783 50782 2 FYAKPLAALVTYK TANSMYGCLGFSYSRFYAKPLAALVTYKGR SRFYAKPLAALVTYKGREILMHTKEMVQKM R F Y Y K G 3 0 0 0 0 0 0 0 0 0 2 2 0 1 1 0 1 0 2 1 0 0 13 1 1483.8439 A0A087WU64;A6NMQ1;P09884 A0A087WU64 966 978 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2;3 0.0005954 74.944 By MS/MS By matching By matching 2 2 1 0.98162 1.0855 13.446 5 Median 0.89742 0.87468 0.60845 2 1 Median 1.1512 1.111 3.2794 2 0 Median 0.98162 1.1253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17676000 8885500 8790200 15546000 7888600 7657000 801370 410550 390810 1328800 586420 742360 0 0 0 0 0 0 0 0 0 10230 26 10649 50751;50752;50753;50754;50755 50784;50785;50786 50784 3 FYALSASFEPFSNK DEEKDKGLQTSQDARFYALSASFEPFSNKG RFYALSASFEPFSNKGQTLVVQFTVKHEQN R F Y N K G 2 0 1 0 0 0 1 0 0 0 1 1 0 3 1 3 0 0 1 0 0 0 14 0 1606.7668 P27797 P27797 74 87 CALR Calreticulin yes yes 2 0.00066788 64.297 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 2 1 1 1.0387 0.89664 28.723 9 Median 0.94319 0.86594 NaN 1 0 Median 0.99288 0.84772 28.072 4 1 Median 0.93263 0.93157 17.185 2 0 Median 1.0905 0.95488 NaN 1 0 Median 1.5916 1.5352 NaN 1 0 Median NaN NaN NaN 0 0 Median 84442000 41250000 43192000 52718000 25595000 27123000 21120000 10091000 11029000 9275300 5036300 4239000 421180 209890 211300 907280 317870 589400 0 0 0 10231 2157 10650 50756;50757;50758;50759;50760;50761;50762;50763;50764 50787;50788;50789;50790;50791;50792;50793 50787 7 FYAYNPLAGGLLTGK VETELFPCLRHFGLRFYAYNPLAGGLLTGK FYAYNPLAGGLLTGKYKYEDKDGKQPVGRF R F Y G K Y 2 0 1 0 0 0 0 3 0 0 3 1 0 1 1 0 1 0 2 0 0 0 15 0 1583.8348 H3BLU7;O43488;A0A499FJT0;Q8NHP1 H3BLU7 177 191 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 2 4.6488E-10 108.56 By MS/MS By MS/MS By matching 3 2 1 0.86494 0.783 26.742 5 Median 0.86494 0.783 8.9503 3 0 Median 0.58363 0.48902 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1624 0.98867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102930000 61562000 41367000 73105000 39056000 34049000 29566000 22374000 7191600 0 0 0 258140 131460 126680 0 0 0 0 0 0 10232 1206 10651 50765;50766;50767;50768;50769;50770 50794;50795;50796;50797;50798;50799;50800 50799 7 FYDANYDGKEYDPVEAR GRFQDNLDFIQWFKKFYDANYDGKEYDPVE DANYDGKEYDPVEARQGQDAIPPPDPGEQI K F Y A R Q 2 1 1 3 0 0 2 1 0 0 0 1 0 1 1 0 0 0 3 1 0 0 17 1 2050.8909 K7EL66;K7ERD8;Q15555 K7EL66 63 79 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 3 8.3967E-06 57.499 By matching By MS/MS By MS/MS 1 1 2 1.1858 1.2811 24.59 4 Linear NaN NaN NaN 0 0 Median 0.87274 0.81617 NaN 1 0 Median 1.2351 1.4046 NaN 1 0 Median 0.97995 0.89025 0.15118 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10171000 4552000 5618600 0 0 0 103280 64013 39271 7235000 2996200 4238800 2832300 1491800 1340500 0 0 0 0 0 0 10233 1373 10652 50771;50772;50773;50774 50801;50802;50803 50801 3 FYDDAIVSQK PRDIDAFWLQRQLSRFYDDAIVSQKKADEV RQLSRFYDDAIVSQKKADEVLEILKTASDD R F Y Q K K 1 0 0 2 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1184.5714 O75643;A0A494C1A5 O75643 275 284 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 7.8138E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 3 1.204 1.0339 38.708 11 Median 1.204 1.203 NaN 1 0 Median 1.3506 1.1872 24.529 2 0 Median 1.0654 1.1567 15.862 2 0 Median 0.76155 0.74406 77.706 2 0 Median 0.97858 1.0246 NaN 1 1 Median 1.4521 1.2443 46.471 3 0 Plateau 122740000 57761000 64981000 7261800 2851200 4410600 15140000 6505700 8634100 68178000 33117000 35061000 14950000 6493800 8456300 13071000 6951200 6120000 4141200 1842300 2298800 10234 1688 10653 50775;50776;50777;50778;50779;50780;50781;50782;50783;50784;50785 50804;50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815 50813 12 FYDDAIVSQKK PRDIDAFWLQRQLSRFYDDAIVSQKKADEV QLSRFYDDAIVSQKKADEVLEILKTASDDR R F Y K K A 1 0 0 2 0 1 0 0 0 1 0 2 0 1 0 1 0 0 1 1 0 0 11 1 1312.6663 O75643;A0A494C1A5 O75643 275 285 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.015912 25.068 By MS/MS 1 1.0728 1.2366 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0728 1.2366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3925700 1878800 2046900 0 0 0 0 0 0 3925700 1878800 2046900 0 0 0 0 0 0 0 0 0 10235 1688 10654 50786 50816 50816 1 FYDLSSK EMLNNLPGVTSVHSRFYDLSSKYYQTIGNH GVTSVHSRFYDLSSKYYQTIGNHASYYKDA R F Y S K Y 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 7 0 858.41233 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 155 161 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.013611 76.035 By matching By MS/MS 1 1 1.0767 0.9776 24.652 2 Median 0.84923 0.82122 NaN 1 0 Median 1.3652 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9200200 3989300 5211000 979120 482040 497070 8221100 3507200 4713900 0 0 0 0 0 0 0 0 0 0 0 0 10236 4345 10655 50787;50788 50817;50818 50818 2 FYDSNTVK LEQKKNPQAVLDVLKFYDSNTVKQKYLSFT AVLDVLKFYDSNTVKQKYLSFTPPEKDGFP K F Y V K Q 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 1 0 0 8 0 972.45526 Q13177 Q13177 129 136 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 2 0.0051787 77.282 By MS/MS By MS/MS 1 1 1.269 1.1532 0.27542 2 Median 1.193 1.1509 NaN 1 0 Median 1.3499 1.1554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6112900 2742700 3370300 2339800 1106500 1233300 3773100 1636200 2136900 0 0 0 0 0 0 0 0 0 0 0 0 10237 2794 10656 50789;50790 50819;50820 50820 2 FYEAFSK ELFSELAEDKENYKKFYEAFSKNLKLGIHE EDKENYKKFYEAFSKNLKLGIHEDSTNRRR K F Y S K N 1 0 0 0 0 0 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 890.41742 P08238 P08238 429 435 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.0087447 85.359 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 2 1 3 3 1.3133 1.1343 29.249 16 Median 1.2207 1.1227 16.506 4 0 Median 1.3257 1.1186 11.963 3 0 Median 1.1041 1.1891 10.986 2 0 Median 1.1935 1.0353 NaN 1 0 Median 2.174 2.2803 17.177 3 0 Median 1.3628 1.1247 17.833 3 0 Median 509410000 226250000 283150000 175770000 77379000 98392000 304510000 136430000 168080000 14778000 6746400 8032000 2196500 968540 1228000 6799300 2382000 4417300 5351400 2350200 3001200 10238 1899 10657 50791;50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806 50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838 50822 18 FYEAGEELTGPGAVAAAR PTWLAAPPRLARPPRFYEAGEELTGPGAVA AGEELTGPGAVAAARLYGLEPAHPLLYSRL R F Y A R L 5 1 0 0 0 0 3 3 0 0 1 0 0 1 1 0 1 0 1 1 0 0 18 0 1807.8741 J3KNZ9;Q9HAH7 J3KNZ9 897 914 FBRS Probable fibrosin-1 yes no 2 5.2945E-14 116.01 By MS/MS 1 0.56549 0.62195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56549 0.62195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6579700 3903400 2676200 0 0 0 0 0 0 6579700 3903400 2676200 0 0 0 0 0 0 0 0 0 10239 1306 10658 50807 50839;50840 50839 2 FYEDNGQLDDAR KATGKPHTLWVAFAKFYEDNGQLDDARVIL FAKFYEDNGQLDDARVILEKATKVNFKQVD K F Y A R V 1 1 1 3 0 1 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 12 0 1441.611 Q9HCS7 Q9HCS7 404 415 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.00039411 140.16 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.95292 1.004 16.179 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90105 0.95911 NaN 1 0 Median 0.87212 0.75062 NaN 1 0 Median 1.0078 1.0637 NaN 1 0 Median 1.275 1.051 NaN 1 0 Median 12305000 6177000 6127800 0 0 0 0 0 0 6989900 3687300 3302500 1137800 592660 545120 3755000 1683800 2071100 422200 213150 209040 10240 4032 10659 50808;50809;50810;50811 50841;50842 50841 2 FYEEFDAHGR VRAQYQHDTSLPHCRFYEEFDAHGREVPLP LPHCRFYEEFDAHGREVPLPAGIYNLDDLK R F Y G R E 1 1 0 1 0 0 2 1 1 0 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1269.5415 P18074;A8MX75;K7EIT8 P18074 157 166 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 0.0030817 42.718 By matching By MS/MS 1 1 1.1667 1.1873 23.193 2 Median 1.4069 1.3989 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96744 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6692800 3372100 3320700 1040600 380330 660250 0 0 0 5652300 2991800 2660500 0 0 0 0 0 0 0 0 0 10241 2053 10660 50812;50813 50843;50844 50844 2 FYEEVHDLER ALKQLQVRCAHIEAKFYEEVHDLERKYAAL HIEAKFYEEVHDLERKYAALYQPLFDKRRE K F Y E R K 0 1 0 1 0 0 3 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1335.6095 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8;F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543;F8VRJ2;F8VVB5 Q99733 84 93 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 no no 2;3 1.3887E-11 145.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 7 5 1 3 1.0367 0.96539 23.284 22 Median 1.5829 1.4711 44.388 3 0 Plateau 1.3801 1.1684 27.674 3 1 Median 0.94258 0.93843 15.521 7 2 Median 1.0348 0.88536 22.226 5 2 Median 1.2163 1.2192 NaN 1 1 Median 1.2603 1.0944 10.593 3 1 Plateau 387110000 181480000 205630000 121300000 51866000 69433000 30132000 10951000 19181000 92284000 46625000 45659000 131750000 66638000 65109000 4577200 1938000 2639200 7067300 3463100 3604200 10242 3766;1033 10661 50814;50815;50816;50817;50818;50819;50820;50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835 50845;50846;50847;50848;50849;50850;50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862;50863;50864;50865;50866 50864 22 FYEEVHDLERK ALKQLQVRCAHIEAKFYEEVHDLERKYAAL IEAKFYEEVHDLERKYAALYQPLFDKRREF K F Y R K Y 0 1 0 1 0 0 3 0 1 0 1 1 0 1 0 0 0 0 1 1 0 0 11 1 1463.7045 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8;F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543;F8VRJ2;F8VVB5 Q99733 84 94 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 no no 2;3 4.1623E-05 128.27 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 1 1.1489 1.1455 13.679 7 Median 1.1489 1.1455 11.23 3 0 Median 1.0907 0.99615 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3178 1.2586 NaN 1 0 Median 0.97707 1.005 NaN 1 0 Median 1.5312 1.3873 NaN 1 0 Median 68977000 30390000 38587000 39962000 17197000 22765000 3443600 1483400 1960200 0 0 0 16172000 7515300 8656800 6401300 2825000 3576300 2998700 1369700 1629100 10243 3766;1033 10662 50836;50837;50838;50839;50840;50841;50842 50867;50868;50869;50870;50871 50868 5 FYEFSLSDLR ACQERRNYIPQGWTKFYEFSLSDLRAGYNI QGWTKFYEFSLSDLRAGYNIIDRLFDGAKD K F Y L R A 0 1 0 1 0 0 1 0 0 0 2 0 0 2 0 2 0 0 1 0 0 0 10 0 1275.6136 Q8NCM8;H0YDE0 Q8NCM8 3888 3897 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.0025713 59.8 By MS/MS 1 1.0029 1.009 NaN 1 Median 1.0029 1.009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4066200 2213900 1852300 4066200 2213900 1852300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10244 3418 10663 50843 50872 50872 1 FYEFSQR KAWGAVVPLVGKLKKFYEFSQRLEAALRGL PLVGKLKKFYEFSQRLEAALRGLLGALTST K F Y Q R L 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 7 0 975.44503 Q9NUQ9;E5RI16;E5RJL8 Q9NUQ9 93 99 FAM49B Protein FAM49B yes no 2 0.0030738 122.79 By MS/MS By matching By matching 1 1 1 1.3424 1.131 14.752 3 Median 1.0692 1.0002 NaN 1 0 Median 1.3424 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5933 1.3416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13211000 6192900 7017900 11019000 5323800 5695400 1932100 790410 1141700 0 0 0 259600 78763 180840 0 0 0 0 0 0 10245 4120 10664 50844;50845;50846 50873;50874 50874 2 FYELELNIQGHK TVCNQCGRESKLLSKFYELELNIQGHKQLT LSKFYELELNIQGHKQLTDCISEFLKEEKL K F Y H K Q 0 0 1 0 0 1 2 1 1 1 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1489.7565 Q86UV5 Q86UV5 236 247 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2;3 0.00020872 101.11 By MS/MS By matching 2 1 0.947 1.0161 19.531 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99759 1.0737 7.7926 2 1 Median 0.90714 0.77611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13766000 6756200 7009600 0 0 0 0 0 0 13445000 6603600 6840900 321250 152610 168640 0 0 0 0 0 0 10246 3281 10665 50847;50848;50849 50875;50876;50877 50877 3 FYEQFSK ELFTELAEDKENYKKFYEQFSKNIKLGIHE EDKENYKKFYEQFSKNIKLGIHEDSQNRKK K F Y S K N 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 947.43888 P07900 P07900 437 443 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.0023826 117.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 2 1 1 1.1909 1.0541 17.552 13 Median 1.2336 1.1488 7.9081 6 2 Median 1.1909 1.0451 20.201 3 0 Plateau 1.247 1.3402 5.9661 2 0 Median 1.1 0.95318 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1371 0.9383 NaN 1 0 Median 480600000 215660000 264930000 284350000 126230000 158120000 173560000 78627000 94929000 16398000 7855600 8542800 4307200 2045600 2261600 0 0 0 1989600 910920 1078700 10247 1894 10666 50850;50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862 50878;50879;50880;50881;50882;50883;50884;50885;50886;50887;50888;50889;50890;50891;50892;50893;50894;50895;50896 50893 19 FYEQMNGPVAGASR KIWFDKFKYDDAERRFYEQMNGPVAGASRQ RFYEQMNGPVAGASRQENGASVILRDIARA R F Y S R Q 2 1 1 0 0 1 1 2 0 0 0 0 1 1 1 1 0 0 1 1 0 0 14 0 1525.6984 E9PL71;E9PN91;E9PKK3;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 25 38 EEF1D Elongation factor 1-delta no no 2;3 5.4227E-43 223.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 10 2 2 1.0708 0.90589 24.205 25 Median 0.91697 0.86984 4.5306 4 0 Median 1.0567 0.87633 6.2065 3 0 Plateau 1.2319 1.2389 21.146 4 0 Median 1.0637 0.91505 26.097 10 0 Median 1.1675 1.2128 6.5227 2 0 Median 1.0353 0.85636 2.6242 2 0 Median 874340000 412910000 461430000 176290000 87042000 89249000 16538000 7579600 8958500 197120000 87962000 109150000 457160000 217580000 239580000 20665000 9562100 11103000 6562500 3182300 3380100 10248 985;2174;957 10667;10668 50863;50864;50865;50866;50867;50868;50869;50870;50871;50872;50873;50874;50875;50876;50877;50878;50879;50880;50881;50882;50883;50884;50885;50886;50887 50897;50898;50899;50900;50901;50902;50903;50904;50905;50906;50907;50908;50909;50910;50911;50912;50913;50914;50915;50916;50917;50918;50919;50920;50921;50922;50923;50924;50925;50926;50927;50928;50929;50930;50931;50932;50933;50934;50935;50936 50918 338 40 FYEQVVQAIQR KRKGNCSQHDRALERFYEQVVQAIQRHIHF ALERFYEQVVQAIQRHIHFDVVKCILVASP R F Y Q R H 1 1 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 11 0 1379.7197 Q9BRX2 Q9BRX2 185 195 PELO Protein pelota homolog yes yes 2 0.00011299 145.17 By MS/MS By MS/MS 1 2 1.0706 1.1164 28.383 3 Median 1.1247 1.1164 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87023 0.90492 36.291 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33772000 17146000 16626000 7087600 4083900 3003700 0 0 0 26684000 13062000 13623000 0 0 0 0 0 0 0 0 0 10249 3805 10669 50888;50889;50890 50937;50938;50939;50940 50937 4 FYFHDGVR EYTEQVVKLMVPLLKFYFHDGVRVAAAESM LMVPLLKFYFHDGVRVAAAESMPLLLECAR K F Y V R V 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 0 1 1 0 0 8 0 1039.4876 O00410;H0Y8C6 O00410 713 720 IPO5 Importin-5 yes no 2 0.0074447 67.032 By MS/MS By MS/MS 1 1 1.1216 1.009 17.795 2 Median 1.1875 1.1443 NaN 1 0 Median 1.0594 0.88974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16912000 7947800 8963900 10052000 4517200 5534900 6859500 3430600 3428900 0 0 0 0 0 0 0 0 0 0 0 0 10250 1460 10670 50891;50892 50941;50942;50943 50941 3 FYFLEAYNAK LPECVQVYSMGGPNRFYFLEAYNAKSKSFE GGPNRFYFLEAYNAKSKSFEDPPNHARSPG R F Y A K S 2 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 2 0 0 0 10 0 1264.6128 P26358 P26358 1083 1092 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.0015788 64.265 By matching By MS/MS By MS/MS 1 3 4 1.0574 0.94526 10.751 8 Median NaN NaN NaN 0 0 Median 1.0938 0.92861 NaN 1 0 Median 0.97359 1.0726 11.416 3 0 Median 1.0631 0.93693 8.9768 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26837000 13176000 13661000 0 0 0 397290 160070 237230 23785000 11766000 12019000 2654900 1250000 1404900 0 0 0 0 0 0 10251 2142 10671 50893;50894;50895;50896;50897;50898;50899;50900 50944;50945;50946 50944 3 FYGDEEK KHKSDFGKFVLSSGKFYGDEEKDKGLQTSQ KFVLSSGKFYGDEEKDKGLQTSQDARFYAL K F Y E K D 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 7 0 886.37086 P27797;K7EJB9 P27797 56 62 CALR Calreticulin yes no 2 0.029709 50.127 By matching By MS/MS 1 1 1.1752 1.0615 5.4968 2 Median 1.1514 1.1036 NaN 1 0 Median 1.1994 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7777500 3497800 4279700 2904800 1323100 1581700 4872700 2174700 2698000 0 0 0 0 0 0 0 0 0 0 0 0 10252 2157 10672 50901;50902 50947 50947 1 FYGDEEKDK KHKSDFGKFVLSSGKFYGDEEKDKGLQTSQ VLSSGKFYGDEEKDKGLQTSQDARFYALSA K F Y D K G 0 0 0 2 0 0 2 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 9 1 1129.4928 P27797;K7EJB9 P27797 56 64 CALR Calreticulin yes no 2 0.013038 69.812 By matching By MS/MS 3 4 1.0816 1.0157 17.679 7 Median 1.0816 1.0157 6.7414 3 0 Median 1.0957 1.0165 24.043 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46353000 21861000 24491000 23960000 11278000 12682000 22393000 10584000 11809000 0 0 0 0 0 0 0 0 0 0 0 0 10253 2157 10673 50903;50904;50905;50906;50907;50908;50909 50948;50949 50949 2 FYGDEEKDKGLQTSQDAR KHKSDFGKFVLSSGKFYGDEEKDKGLQTSQ DEEKDKGLQTSQDARFYALSASFEPFSNKG K F Y A R F 1 1 0 3 0 2 2 2 0 0 1 2 0 1 0 1 1 0 1 0 0 0 18 2 2085.9603 P27797 P27797 56 73 CALR Calreticulin yes yes 3;4 2.2667E-11 98.507 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 1.0343 1.1444 17.838 11 Median 1.0324 1.1013 9.2786 5 0 Median 1.2958 1.3278 20.609 3 1 Plateau 0.87665 1.0171 22.503 2 0 Median NaN NaN NaN 0 0 Median 1.4099 1.6128 NaN 1 0 Median NaN NaN NaN 0 0 Median 134760000 61223000 73538000 100880000 46606000 54274000 25879000 11051000 14828000 4281300 2025000 2256300 0 0 0 3721900 1541700 2180100 0 0 0 10254 2157 10674 50910;50911;50912;50913;50914;50915;50916;50917;50918;50919;50920 50950;50951;50952;50953;50954;50955;50956;50957;50958;50959;50960;50961;50962;50963 50953 14 FYGDLMEK IAGIDLKQQKREQSRFYGDLMEKRRTLEEK QKREQSRFYGDLMEKRRTLEEKEQEEARLR R F Y E K R 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 8 0 1001.4528 Q9BUQ8 Q9BUQ8 319 326 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.014044 51.854 By matching By MS/MS By matching By matching 1 2 1 1 1.1588 1.0958 34.273 5 Median NaN NaN NaN 0 0 Median 2.4824 2.237 NaN 1 0 Median 0.99206 1.0707 7.4083 2 0 Median 1.2602 1.0958 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1588 0.97296 NaN 1 0 Median 17213000 8282400 8930500 0 0 0 849770 237880 611880 15212000 7529700 7682000 853910 371600 482310 0 0 0 297480 143220 154260 10255 3842 10675 50921;50922;50923;50924;50925 50964;50965 50964 2 FYGELALK SRLMDEFKIGELFSKFYGELALKKKIPDTV IGELFSKFYGELALKKKIPDTVLEKVYELL K F Y L K K 1 0 0 0 0 0 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 P78527;F5GX40 P78527 156 163 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.01208 55.676 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2205 1.0273 16.585 5 Median 0.98411 0.98784 NaN 1 0 Median 1.4516 1.2933 NaN 1 0 Median 0.91878 0.97726 NaN 1 0 Median 1.424 1.3929 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2205 1.0273 NaN 1 0 Median 120840000 59700000 61142000 34086000 17099000 16987000 21446000 9199900 12246000 58814000 30652000 28162000 4710500 1979700 2730800 0 0 0 1786000 770080 1015900 10256 2647 10676 50926;50927;50928;50929;50930 50966;50967;50968;50969;50970;50971;50972 50967 7 FYGELALKK SRLMDEFKIGELFSKFYGELALKKKIPDTV GELFSKFYGELALKKKIPDTVLEKVYELLG K F Y K K K 1 0 0 0 0 0 1 1 0 0 2 2 0 1 0 0 0 0 1 0 0 0 9 1 1067.6015 P78527;F5GX40 P78527 156 164 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0044613 67.169 By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 1.3284 1.3966 38.576 6 Median 1.2203 1.3275 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96807 1.0926 NaN 1 0 Median 1.4462 1.4692 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.7767 2.4747 57.364 3 0 Plateau 173400000 87618000 85786000 52239000 25388000 26851000 0 0 0 102900000 55192000 47712000 12237000 4838300 7398200 0 0 0 6023900 2199300 3824700 10257 2647 10677 50931;50932;50933;50934;50935;50936 50973;50974;50975;50976;50977;50978;50979 50975 7 FYGLPYVPNTAWQLR LRNSTTDILKETQEKFYGLPYVPNTAWQLR FYGLPYVPNTAWQLRFSHLVGYGARYYSYL K F Y L R F 1 1 1 0 0 1 0 1 0 0 2 0 0 1 2 0 1 1 2 1 0 0 15 0 1823.9359 Q99797 Q99797 607 621 MIPEP Mitochondrial intermediate peptidase yes yes 2 0.036005 35.414 By MS/MS 1 1.494 1.4841 NaN 1 Median 1.494 1.4841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1179100 471290 707770 1179100 471290 707770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10258 3769 10678 50937 50980 50980 1 FYGPAGPYGIFAGR LAVNGKVFDVTKGSKFYGPAGPYGIFAGRD KFYGPAGPYGIFAGRDASRGLATFCLDKDA K F Y G R D 2 1 0 0 0 0 0 4 0 1 0 0 0 2 2 0 0 0 2 0 0 0 14 0 1471.7248 O15173 O15173 136 149 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 2 1.6106E-07 98.249 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.011 0.91429 10.918 6 Median 0.84257 0.81109 8.4938 2 0 Median 1.1332 0.95549 8.2737 2 0 Median 0.97125 0.92758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0523 1.024 NaN 1 1 Median NaN NaN NaN 0 0 Median 55699000 29413000 26286000 49229000 26247000 22982000 1676800 790310 886500 3827300 1915300 1912000 0 0 0 965670 460960 504710 0 0 0 10259 1529 10679 50938;50939;50940;50941;50942;50943 50981;50982;50983;50984;50985;50986;50987;50988;50989;50990;50991;50992;50993 50983 13 FYGPEGPYGVFAGR MAINGKVFDVTKGRKFYGPEGPYGVFAGRD KFYGPEGPYGVFAGRDASRGLATFCLDKEA K F Y G R D 1 1 0 0 0 0 1 4 0 0 0 0 0 2 2 0 0 0 2 1 0 0 14 0 1515.7147 O00264 O00264 106 119 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 2.3579E-08 110.53 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.95555 0.89707 14.195 4 Median 0.85061 0.81014 NaN 1 0 Median 1.1746 0.99332 NaN 1 0 Median 0.84229 0.8093 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0734 1.0678 NaN 1 0 Median NaN NaN NaN 0 0 Median 148620000 75502000 73120000 124620000 64073000 60549000 8548200 3789600 4758600 10757000 5352300 5404600 0 0 0 4695100 2287100 2408100 0 0 0 10260 1451 10680 50944;50945;50946;50947 50994;50995;50996;50997;50998;50999;51000;51001;51002;51003 50997 10 FYGPQGTPYEGGVWK HEVTILGGLNEFVVKFYGPQGTPYEGGVWK FYGPQGTPYEGGVWKVRVDLPDKYPFKSPS K F Y W K V 0 0 0 0 0 1 1 4 0 0 0 1 0 1 2 0 1 1 2 1 0 0 15 0 1684.7886 H7C4M9;C9JZG9;C9JZY6;P62256 H7C4M9 30 44 UBE2H Ubiquitin-conjugating enzyme E2 H yes no 2 0.00035511 64.439 By MS/MS By matching 1 1 0.87358 0.78876 1.1771 2 Median 0.84234 0.79535 NaN 1 0 Median 0.90599 0.78222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13304000 7232000 6071800 11167000 6100200 5067000 2136700 1131800 1004800 0 0 0 0 0 0 0 0 0 0 0 0 10261 731 10681 50948;50949 51004;51005 51005 2 FYGRDYEYNR GYRNFYDRYRGDYDRFYGRDYEYNRYRDYY GDYDRFYGRDYEYNRYRDYYRQYNRDWQSY R F Y N R Y 0 2 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 10 1 1381.6051 Q1KMD3;H3BQZ7 Q1KMD3 701 710 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.002328 48.004 By MS/MS By matching 2 1 0.76331 0.82935 45.579 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0474 1.128 43.491 2 0 Median 0.69675 0.62985 NaN 1 0 Median 7167800 3668700 3499100 0 0 0 0 0 0 0 0 0 0 0 0 6606700 3365200 3241500 561140 303510 257630 10262 3002 10682 50950;50951;50952 51006;51007 51006 2 FYHDAKEIFGR DTRTQILAASYELHKFYHDAKEIFGRIQDK ELHKFYHDAKEIFGRIQDKHKKLPEELGRD K F Y G R I 1 1 0 1 0 0 1 1 1 1 0 1 0 2 0 0 0 0 1 0 0 0 11 1 1381.6779 Q01082;A0A087WUZ3 Q01082 1810 1820 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00025234 62.633 By MS/MS 1 0.8994 1.0783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8994 1.0783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8509300 4032200 4477100 0 0 0 0 0 0 8509300 4032200 4477100 0 0 0 0 0 0 0 0 0 10263 2681 10683 50953 51008 51008 1 FYHDWNDKEIEVLNK CKVKSWVIDQKKPVRFYHDWNDKEIEVLNK FYHDWNDKEIEVLNKHLFLTSKPMVYLVNL R F Y N K H 0 0 2 2 0 0 2 0 1 1 1 2 0 1 0 0 0 1 1 1 0 0 15 1 1948.9319 J3KQ32;Q9NTK5;C9JCJ9 J3KQ32 222 236 OLA1 Obg-like ATPase 1 yes no 3;4 0.013874 23.881 By matching By matching By MS/MS By MS/MS 1 2 3 2 1.1109 1.0722 20.281 8 Median 1.0609 1.0188 NaN 1 0 Median 1.0716 0.9728 4.3821 2 0 Median 1.248 1.3087 16.521 3 0 Plateau 1.4662 1.3927 29.749 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24102000 11073000 13029000 4834800 2204300 2630500 2988900 1475300 1513600 12407000 5855900 6550900 3871300 1537300 2334000 0 0 0 0 0 0 10264 1315 10684 50954;50955;50956;50957;50958;50959;50960;50961 51009;51010 51010 2 FYHEELNAPIRR FVPTNMAVNYVQHNRFYHEELNAPIRRNKE HNRFYHEELNAPIRRNKEEPKARPLRVGDT R F Y R R N 1 2 1 0 0 0 2 0 1 1 1 0 0 1 1 0 0 0 1 0 0 0 12 1 1543.7896 Q9NZ63 Q9NZ63 227 238 C9orf78 Uncharacterized protein C9orf78 yes yes 3 0.00016954 61.815 By MS/MS By MS/MS 1 2 0.87619 0.88931 16.475 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89144 0.93044 NaN 1 1 Median 0.7903 0.71628 9.3095 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12645000 6613500 6032000 0 0 0 0 0 0 7035500 3812000 3223500 5610000 2801500 2808500 0 0 0 0 0 0 10265 4185 10685 50962;50963;50964 51011;51012 51012 2 FYIDPYK LSENMKASSFKKLQKFYIDPYKLLPLQRFL SSFKKLQKFYIDPYKLLPLQRFLPRPPGEK K F Y Y K L 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 2 0 0 0 7 0 944.46437 Q9NY12 Q9NY12 144 150 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.013187 76.847 By MS/MS By MS/MS By MS/MS 1 2 2 1.1503 1.0108 19.719 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85383 0.80113 NaN 1 0 Median 1.3846 1.1515 18.429 2 0 Median NaN NaN NaN 0 0 Median 1.1348 1.0745 17.501 2 0 Median 76099000 38620000 37479000 0 0 0 0 0 0 61776000 32315000 29460000 3778500 1603000 2175500 0 0 0 10545000 4701700 5842900 10266 4171 10686 50965;50966;50967;50968;50969 51013;51014;51015;51016 51013 4 FYKENLGQGWMTQK VMLYWTTGTIISSQRFYKENLGQGWMTQKH RFYKENLGQGWMTQKHERMKVYVPTGFSAF R F Y Q K H 0 0 1 0 0 2 1 2 0 0 1 2 1 1 0 0 1 1 1 0 0 0 14 1 1728.8294 P07099 P07099 373 386 EPHX1 Epoxide hydrolase 1 yes yes 3 0.0063948 27.335 By MS/MS 1 1.116 1.0684 NaN 1 Median 1.116 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8040700 4269800 3770900 8040700 4269800 3770900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10267 1879 10687 50970 51017 51017 1 FYLDLYPR LYTARDAASGEVVGKFYLDLYPREGKYGHA SGEVVGKFYLDLYPREGKYGHAACFGLQPG K F Y P R E 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 0 0 0 2 0 0 0 8 0 1085.5546 P52888;K7EP46;K7EMU4 P52888 411 418 THOP1 Thimet oligopeptidase yes no 2 0.010382 58.981 By MS/MS By matching 1 2 1.0306 0.94408 7.8102 3 Median 0.98677 0.94408 NaN 1 0 Median 1.106 0.96465 10.904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8935100 4522200 4412900 5181500 2606200 2575300 3753600 1916000 1837600 0 0 0 0 0 0 0 0 0 0 0 0 10268 2460 10688 50971;50972;50973 51018;51019;51020 51020 3 FYLNNSVMEYHPR MPRSVVGTACMYFKRFYLNNSVMEYHPRII KRFYLNNSVMEYHPRIIMLTCAFLACKVDE R F Y P R I 0 1 2 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 2 1 0 0 13 0 1668.7719 D6RHI7;D6RG18;A0A2R8YEM2;P51946 D6RHI7 16 28 CCNH Cyclin-H yes no 3 0.00027703 60.628 By matching By matching By MS/MS 1 1 1 1.0363 0.88412 21.335 3 Median 1.2239 1.1743 NaN 1 0 Median 1.0363 0.88412 NaN 1 0 Median 0.78537 0.77326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10851000 5516500 5334300 3083400 1361800 1721700 719890 360070 359820 7047400 3794600 3252800 0 0 0 0 0 0 0 0 0 10269 400 10689 50974;50975;50976 51021 51021 1 FYLPGTSRPPIIVSEFR HNHADERVLQALMKRFYLPGTSRPPIIVSE LPGTSRPPIIVSEFRNEIYDVRHRAAYHPD R F Y F R N 0 2 0 0 0 0 1 1 0 2 1 0 0 2 3 2 1 0 1 1 0 0 17 1 1978.0676 Q96SB8;C9JMN1 Q96SB8 552 568 SMC6 Structural maintenance of chromosomes protein 6 yes no 3 0.0027897 26.781 By MS/MS By matching By MS/MS 1 1 1 0.72625 0.88327 29.845 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72625 0.88327 NaN 1 0 Median 0.93061 0.91106 NaN 1 0 Median 0.49271 0.53533 NaN 1 0 Median NaN NaN NaN 0 0 Median 3182600 1851400 1331200 0 0 0 0 0 0 1284700 715980 568770 230270 110940 119340 1667600 1024500 643110 0 0 0 10270 3733 10690 50977;50978;50979 51022;51023;51024;51025 51024 4 FYNELTEILVR DNFVELVANLKEGTKFYNELTEILVRFQNK EGTKFYNELTEILVRFQNKCSDIVFARKTE K F Y V R F 0 1 1 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 1 1 0 0 11 0 1395.7398 Q8WUM4 Q8WUM4 676 686 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0004849 68.735 By MS/MS By MS/MS By matching By MS/MS 2 3 4 1 1.1809 1.029 40.026 10 Median 0.92806 0.90781 13.762 2 0 Median 1.219 1.0541 4.9342 3 0 Plateau NaN NaN NaN 0 0 Median 1.2307 1.0536 33.796 4 0 Median 2.784 2.9728 NaN 1 0 Median NaN NaN NaN 0 0 Median 34031000 16565000 17466000 7272600 3377300 3895300 24668000 12626000 12041000 0 0 0 709170 311410 397760 1381500 249770 1131700 0 0 0 10271 3493 10691 50980;50981;50982;50983;50984;50985;50986;50987;50988;50989 51026;51027;51028;51029;51030;51031;51032;51033 51027 8 FYNLVLLPR TRIFASNLKERMAQRFYNLVLLPRVRDDVA ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL R F Y P R V 0 1 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 1 1 0 0 9 0 1133.6597 Q13895;H7BY94 Q13895 249 257 BYSL Bystin yes no 2 0.0016236 79.469 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 2 1.0006 0.98947 14.152 8 Median 1.0019 0.9901 NaN 1 0 Median 0.99922 0.87056 NaN 1 0 Median 1.2904 1.2953 NaN 1 0 Median 0.96984 0.84551 NaN 1 0 Median 0.98844 1.0146 3.6337 2 0 Median 1.0846 0.91812 12.003 2 0 Median 11608000 5637300 5971000 1218200 601830 616380 1160900 565690 595170 1656800 706640 950190 1032600 520480 512080 5680900 2842800 2838100 858900 399850 459040 10272 2845 10692 50990;50991;50992;50993;50994;50995;50996;50997 51034;51035;51036;51037 51037 4 FYNNVQGLVPK HGFIIRVKDYGCIVKFYNNVQGLVPKHELS CIVKFYNNVQGLVPKHELSTEYIPDPERVF K F Y P K H 0 0 2 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1277.6768 Q14690;A0A3B3IUD7 Q14690 561 571 PDCD11 Protein RRP5 homolog yes no 2 0.03474 29.81 By MS/MS By matching By matching By matching 1 1 1 1 1.1232 1.082 19.242 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0299 1.1358 NaN 1 0 Median 1.4375 1.3081 NaN 1 0 Median 0.78774 0.82754 NaN 1 0 Median 1.2249 1.0308 NaN 1 0 Median 19551000 9167900 10383000 0 0 0 0 0 0 14138000 6396600 7741900 1259100 524550 734500 3879100 2123900 1755200 274680 122940 151740 10273 448 10693 50998;50999;51000;51001 51038 51038 1 FYNQVSTPLLR QRIYGNQDTSVQLKKFYNQVSTPLLRNVQF QLKKFYNQVSTPLLRNVQFNYPQPSVTDVT K F Y L R N 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1336.7139 CON__Q9TRI1;Q5T985;P19823 CON__Q9TRI1 489 499 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 yes no 2 2.3759E-05 124.23 By MS/MS 1 0.14938 0.14592 NaN 1 Median 0.14938 0.14592 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2832900 2380100 452810 2832900 2380100 452810 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10274 793 10694 51002 51039 51039 1 FYPEDVSEELIQDITQR DVRKESPLLFKFRAKFYPEDVSEELIQDIT PEDVSEELIQDITQRLFFLQVKEGILNDDI K F Y Q R L 0 1 0 2 0 2 3 0 0 2 1 0 0 1 1 1 1 0 1 1 0 0 17 0 2080.9953 P26038;V9GZ54 P26038 84 100 MSN Moesin yes no 3 0.05808 9.254 By MS/MS 1 0.86793 0.86759 NaN 1 Median 0.86793 0.86759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 508290 274550 233740 508290 274550 233740 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10275 2139 10695 51003 51040 51040 1 FYPIPSLHSTGS ESECLNPSTQSRISKFYPIPSLHSTGS___ ISKFYPIPSLHSTGS_______________ K F Y G S - 0 0 0 0 0 0 0 1 1 1 1 0 0 1 2 3 1 0 1 0 0 0 12 0 1304.6401 Q9H2G2 Q9H2G2 1224 1235 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.023063 49.715 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8387300 0 0 8387300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10276 3942 10696 51004 51041 51041 1 FYPLEIDYGQDEEAVK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K F Y V K K 1 0 0 2 0 1 3 1 0 1 1 1 0 1 1 0 0 0 2 1 0 0 16 0 1914.8887 P09874 P09874 638 653 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00013392 54.7 By MS/MS By matching 2 1 0.84127 0.878 4.9158 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79459 0.85727 6.6728 2 0 Median 1.0197 0.878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28056000 14921000 13135000 0 0 0 0 0 0 24052000 13119000 10933000 4003800 1802100 2201600 0 0 0 0 0 0 10277 1922 10697 51005;51006;51007 51042;51043;51044;51045 51043 4 FYPLEIDYGQDEEAVKK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K F Y K K L 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 P09874 P09874 638 654 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 6.259E-06 57.525 By MS/MS By MS/MS By MS/MS 1 2 1 0.84423 1.0063 5.5282 4 Linear 0.83171 0.87542 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84423 0.97998 1.5584 2 0 Median 1.015 0.96689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 190170000 99176000 90998000 4827100 2494300 2332800 0 0 0 166290000 87792000 78501000 19055000 8890200 10165000 0 0 0 0 0 0 10278 1922 10698 51008;51009;51010;51011 51046;51047;51048;51049;51050;51051;51052 51047 7 FYPPDPSQLTEDITR RQLRNLPWLFTFNVKFYPPDPSQLTEDITR FYPPDPSQLTEDITRYFLCLQLRQDIASGR K F Y T R Y 0 1 0 2 0 1 1 0 0 1 1 0 0 1 3 1 2 0 1 0 0 0 15 0 1777.8523 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 296 310 EPB41L2 Band 4.1-like protein 2 yes no 2 0.0014708 39.266 By MS/MS By matching 1 1 0.71902 0.66835 10.49 2 Median 0.73664 0.71981 NaN 1 0 Median 0.70182 0.62057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3333800 1879400 1454400 2799700 1605600 1194200 534090 273890 260200 0 0 0 0 0 0 0 0 0 0 0 0 10279 1573 10699 51012;51013 51053;51054;51055 51053 3 FYPVSEDPHR GGTPFPGQGPPQRPRFYPVSEDPHRLAPEG PQRPRFYPVSEDPHRLAPEGLRGLAVSGLP R F Y H R L 0 1 0 1 0 0 1 0 1 0 0 0 0 1 2 1 0 0 1 1 0 0 10 0 1245.5778 O14686 O14686 2906 2915 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.02168 24.855 By MS/MS 1 0.61381 0.69023 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61381 0.69023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1398000 790000 608030 0 0 0 0 0 0 1398000 790000 608030 0 0 0 0 0 0 0 0 0 10280 1490 10700 51014 51056;51057;51058 51057 3 FYQASTSELYGK LLDAVKTCGLINSVKFYQASTSELYGKVQE SVKFYQASTSELYGKVQEIPQKETTPFYPR K F Y G K V 1 0 0 0 0 1 1 1 0 0 1 1 0 1 0 2 1 0 2 0 0 0 12 0 1392.6561 O60547 O60547 150 161 GMDS GDP-mannose 4,6 dehydratase yes yes 2 3.0793E-06 110.14 By MS/MS By matching 1 1 1.1279 0.99022 19.794 2 Median 1.235 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0301 0.86088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24384000 10743000 13641000 23820000 10459000 13361000 0 0 0 0 0 0 563920 284260 279650 0 0 0 0 0 0 10281 1620 10701 51015;51016 51059;51060 51059 2 FYQDLKDR LRPGDCEVCISYLGRFYQDLKDRDVTFSPA CISYLGRFYQDLKDRDVTFSPATIENELIK R F Y D R D 0 1 0 2 0 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 8 1 1083.5349 P55145;A8K878;H7C2D6 P55145 40 47 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2 0.018021 85.212 By matching By MS/MS By MS/MS 1 1 1 1.2532 1.105 5.467 3 Median NaN NaN NaN 0 0 Median 1.2532 1.105 NaN 1 0 Median 1.0001 1.0396 NaN 1 0 Median 1.3098 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8895900 4196700 4699100 0 0 0 483860 213430 270430 6633500 3228200 3405400 1778500 755130 1023400 0 0 0 0 0 0 10282 538 10702 51017;51018;51019 51061;51062;51063;51064 51061 4 FYQEPNGETPSSLYR CEPQTLCHILGFKFKFYQEPNGETPSSLYR FYQEPNGETPSSLYRVAAVLLQFNLIDLDD K F Y Y R V 0 1 1 0 0 1 2 1 0 0 1 0 0 1 2 2 1 0 2 0 0 0 15 0 1786.8162 Q8NI27;A0A0C4DG98 Q8NI27 254 268 THOC2 THO complex subunit 2 yes no 2 8.685E-08 146.16 By MS/MS By MS/MS 2 2 0.74591 0.73302 20.027 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66949 0.73302 1.1784 2 0 Median 1.0231 0.88505 29.098 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26896000 15195000 11701000 0 0 0 0 0 0 23168000 13318000 9850500 3727200 1876800 1850400 0 0 0 0 0 0 10283 3448 10703 51020;51021;51022;51023 51065;51066;51067;51068 51065 4 FYQGFLFSEKPEK NCAISVICCVFNELKFYQGFLFSEKPEKNL LKFYQGFLFSEKPEKNLLIFENLIDLKRRY K F Y E K N 0 0 0 0 0 1 2 1 0 0 1 2 0 3 1 1 0 0 1 0 0 0 13 1 1618.8031 P78527 P78527 1961 1973 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00016597 94.363 By MS/MS By MS/MS By MS/MS 2 3 2 0.93021 0.98231 23.416 7 Median 0.91619 0.95402 4.133 2 0 Median NaN NaN NaN 0 0 Median 0.80638 0.91089 34.351 3 1 Median 1.3105 1.2744 8.1438 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141080000 73111000 67970000 30453000 15201000 15252000 0 0 0 108750000 57098000 51655000 1875000 810880 1064100 0 0 0 0 0 0 10284 2647 10704 51024;51025;51026;51027;51028;51029;51030 51069;51070;51071;51072;51073;51074;51075;51076 51071 8 FYQNNKDFIDSLGLLHEQNMAK LLTIFVSAKLASYVKFYQNNKDFIDSLGLL FIDSLGLLHEQNMAKMRLLTFMGMAVENKE K F Y A K M 1 0 3 2 0 2 1 1 1 1 3 2 1 2 0 1 0 0 1 0 0 0 22 1 2624.2693 Q7L2H7;H0YCQ8 Q7L2H7 255 276 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 4 3.8959E-07 46.027 By MS/MS By MS/MS 1 1 1.0834 0.99176 1.0716 2 Median 1.0589 0.98427 NaN 1 0 Median 1.1084 0.9993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20956000 9772400 11183000 11482000 5572200 5910100 9473400 4200200 5273100 0 0 0 0 0 0 0 0 0 0 0 0 10285 3221 10705 51031;51032 51077;51078;51079 51079 3 FYQPYSEDTQQQIIR AILIFNNHGKPRLSKFYQPYSEDTQQQIIR FYQPYSEDTQQQIIRETFHLVSKRDENVCN K F Y I R E 0 1 0 1 0 4 1 0 0 2 0 0 0 1 1 1 1 0 2 0 0 0 15 0 1914.9112 Q92572;F5H459 Q92572 19 33 AP3S1 AP-3 complex subunit sigma-1 yes no 2 2.3613E-09 129.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2357 1.024 65.723 5 Median 1.9045 1.8069 105.98 2 1 Median 1.0842 0.89906 NaN 1 0 Median 2.2466 2.1586 NaN 1 0 Median 1.2357 1.024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82766000 35635000 47131000 62453000 27874000 34579000 6343000 3085300 3257700 11103000 3393100 7710400 2866700 1283000 1583700 0 0 0 0 0 0 10286 3537 10706 51033;51034;51035;51036;51037 51080;51081;51082;51083;51084;51085;51086;51087;51088 51081 9 FYQVPVPLPDR CEPMIGLVPILKGGRFYQVPVPLPDRRRRF KGGRFYQVPVPLPDRRRRFLAMKWMITECR R F Y D R R 0 1 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 0 1 2 0 0 11 0 1329.7081 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1 J3QLS3 196 206 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 0.0001941 98.033 By MS/MS 1 0.68801 0.65041 NaN 1 Median 0.68801 0.65041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6513300 3776900 2736500 6513300 3776900 2736500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10287 1341 10707 51038 51089;51090 51089 2 FYQVPVPLPDRR CEPMIGLVPILKGGRFYQVPVPLPDRRRRF GGRFYQVPVPLPDRRRRFLAMKWMITECRD R F Y R R R 0 2 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 0 1 2 0 0 12 1 1485.8092 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1 J3QLS3 196 207 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 0.00014314 70.942 By MS/MS 1 0.54544 0.58304 NaN 1 Median 0.54544 0.58304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15058000 10243000 4815100 15058000 10243000 4815100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10288 1341 10708 51039 51091 51091 1 FYSFALDK RERDERLSSSLERNKFYSFALDKTITPDTK SSLERNKFYSFALDKTITPDTKALLERAKS K F Y D K T 1 0 0 1 0 0 0 0 0 0 1 1 0 2 0 1 0 0 1 0 0 0 8 0 989.48583 Q96T58 Q96T58 1431 1438 SPEN Msx2-interacting protein yes yes 2 0.0063783 71.501 By MS/MS By matching By MS/MS 1 2 1 1.1603 1.1583 12.997 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0481 1.1245 NaN 1 0 Median 1.1849 1.0823 13.774 2 0 Median 1.267 1.3421 NaN 1 0 Median NaN NaN NaN 0 0 Median 9317000 4182500 5134400 0 0 0 0 0 0 6898600 3210800 3687800 353780 159360 194430 2064600 812330 1252200 0 0 0 10289 3741 10709 51040;51041;51042;51043 51092;51093;51094;51095 51092 4 FYSGTGFK FLHALRLHWVEFQNKFYSGTGFKFLPFSFE WVEFQNKFYSGTGFKFLPFSFEHIREGKFE K F Y F K F 0 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 1 0 0 0 8 0 905.42832 Q93050;B7Z641;B7Z2A9;F5H1T6 Q93050 814 821 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.0078694 65.252 By MS/MS 2 1.5373 1.3514 8.1143 2 Median NaN NaN NaN 0 0 Median 1.5373 1.3514 8.1143 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12319000 5402100 6917200 0 0 0 12319000 5402100 6917200 0 0 0 0 0 0 0 0 0 0 0 0 10290 3576 10710 51044;51045 51096 51096 1 FYSLLDPSYAK ALLMLTGKISPWTGRFYSLLDPSYAKNNIP WTGRFYSLLDPSYAKNNIPIIASVSEHQPT R F Y A K N 1 0 0 1 0 0 0 0 0 0 2 1 0 1 1 2 0 0 2 0 0 0 11 0 1302.6496 P46977 P46977 330 340 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.00018859 94.692 By MS/MS By MS/MS By MS/MS 3 2 1 1.0285 0.96481 18.555 6 Median 0.85978 0.84676 6.9285 3 0 Median 1.1605 1.0254 5.6917 2 0 Median 1.2803 1.3783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58203000 30035000 28168000 35749000 18806000 16944000 17656000 8490700 9164800 4797700 2738100 2059600 0 0 0 0 0 0 0 0 0 10291 2352 10711 51046;51047;51048;51049;51050;51051 51097;51098;51099;51100;51101 51101 5 FYSLPQSPQQFK GGAKEFLVPSREPGKFYSLPQSPQQFKQLL PGKFYSLPQSPQQFKQLLMVGGLDRYFQVA K F Y F K Q 0 0 0 0 0 3 0 0 0 0 1 1 0 2 2 2 0 0 1 0 0 0 12 0 1468.7351 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 236 247 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 7.3488E-33 164.96 By MS/MS By MS/MS By MS/MS 2 1 1 1.3194 1.2248 30.864 3 Median 1.3194 1.2482 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71957 0.72464 NaN 1 0 Median 1.4349 1.2248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22258000 11603000 10655000 6054500 2549700 3504700 0 0 0 14448000 8322000 6126400 1754900 731130 1023800 0 0 0 0 0 0 10292 3171 10712 51052;51053;51054;51055 51102;51103;51104;51105;51106;51107 51102 6 FYSLWDTGYAK IYLTYTGYIAPWSGRFYSLWDTGYAKIHIP WSGRFYSLWDTGYAKIHIPIIASVSEHQPT R F Y A K I 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 1 1 2 0 0 0 11 0 1349.6292 Q8TCJ2 Q8TCJ2 384 394 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 0.00013635 93.178 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1.3553 1.3485 17.854 8 Median 0.91335 0.87335 NaN 1 0 Median 1.3966 1.2236 NaN 1 0 Median 1.2985 1.384 5.4734 3 0 Median 1.6102 1.4157 9 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29197000 12477000 16720000 2889500 1473900 1415600 1853100 775930 1077100 23168000 9718500 13449000 1286800 508430 778420 0 0 0 0 0 0 10293 3466 10713 51056;51057;51058;51059;51060;51061;51062;51063 51108;51109;51110;51111;51112;51113;51114;51115;51116;51117 51108 10 FYSQAIELNPSNAIYYGNR ANDYFKAKDYENAIKFYSQAIELNPSNAIY AIELNPSNAIYYGNRSLAYLRTECYGYALG K F Y N R S 2 1 3 0 0 1 1 1 0 2 1 0 0 1 1 2 0 0 3 0 0 0 19 0 2219.0647 P53041;H0YDU8 P53041 50 68 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 3 0.00043572 33.308 By MS/MS By matching 1 1 1.2536 1.1798 8.3608 2 Median 1.1168 1.1121 NaN 1 0 Median 1.4071 1.2517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2259200 1235900 1023300 1935000 1108400 826680 324190 127540 196650 0 0 0 0 0 0 0 0 0 0 0 0 10294 1177 10714 51064;51065 51118 51118 1 FYSVNVDYSK NPEPWNKLGPNDQYKFYSVNVDYSKLKKER NDQYKFYSVNVDYSKLKKERPDF_______ K F Y S K L 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 2 0 0 2 2 0 0 10 0 1220.5714 O00483 O00483 64 73 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 2 0.00035409 83.647 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 2 0.41326 0.34053 26.275 8 Median 0.22589 0.2021 NaN 1 0 Median 0.43115 0.35275 1.5007 2 0 Median 0.21657 0.20668 NaN 1 0 Median 0.41609 0.34356 NaN 1 0 Median 0.23274 0.246 NaN 1 0 Median 0.44224 0.36189 9.8579 2 0 Median 323960000 246950000 77008000 167820000 135080000 32741000 123150000 86135000 37020000 16999000 14053000 2945800 461290 333210 128070 7515100 5849400 1665700 8009500 5501900 2507600 10295 1467 10715 51066;51067;51068;51069;51070;51071;51072;51073 51119;51120;51121;51122;51123;51124;51125 51119 7 FYTAPTAIR VNRLWSIVDKYKVTKFYTAPTAIRLLMKFG KYKVTKFYTAPTAIRLLMKFGDEPVTKHSR K F Y I R L 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 9 0 1038.5498 Q9NR19 Q9NR19 406 414 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic yes yes 2 0.013814 45.081 By matching By MS/MS 1 1 0.61207 0.57932 113.68 2 Median 0.25083 0.25931 NaN 1 0 Median 1.4936 1.2943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5212500 2690400 2522100 2330800 1570300 760430 2881700 1120100 1761600 0 0 0 0 0 0 0 0 0 0 0 0 10296 4074 10716 51074;51075 51126;51127 51126 2 FYTEDSPGLK SAGRTTSAGTGGMWRFYTEDSPGLKVGPVP GGMWRFYTEDSPGLKVGPVPVLVMSLLFIA R F Y L K V 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1155.5448 P60468;S4R3B5 P60468 58 67 SEC61B Protein transport protein Sec61 subunit beta yes no 2 1.997E-05 147.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 2 1.0875 0.94546 21.446 11 Median 0.99355 0.88552 6.6997 2 0 Median 1.519 1.2458 47.447 2 0 Median 0.99145 0.94098 NaN 1 0 Median 1.4636 1.1341 25.733 2 0 Median 1.0134 1.0835 0.44464 2 0 Median 1.1965 0.97922 10.983 2 0 Median 233240000 111810000 121440000 55454000 27986000 27468000 102760000 49485000 53278000 34326000 16530000 17795000 11415000 4866800 6548300 13500000 6378200 7122200 15786000 6562900 9223100 10297 2525 10717 51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086 51128;51129;51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143 51130 16 FYTLIPHDFGMK SQGSSDSQILDLSNRFYTLIPHDFGMKKPP SNRFYTLIPHDFGMKKPPLLNNADSVQAKV R F Y M K K 0 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 1 0 1 0 0 0 12 0 1467.7221 P09874 P09874 736 747 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.0661E-10 114.51 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 13 5 4 1 1.0765 1.022 22.784 23 Median 0.95269 0.92359 4.0315 2 0 Median 1.2854 1.1234 NaN 1 0 Median 0.93282 0.99073 24.639 11 0 Median 1.3252 1.1638 21.388 4 0 Median 0.96906 1.014 24.621 4 0 Median 1.0788 0.89457 NaN 1 0 Median 439630000 225090000 214540000 23011000 11449000 11563000 1481500 727420 754070 371530000 192770000 178760000 30082000 13552000 16530000 12364000 6086100 6278200 1159800 511240 648580 10298 1922 10718;10719 51087;51088;51089;51090;51091;51092;51093;51094;51095;51096;51097;51098;51099;51100;51101;51102;51103;51104;51105;51106;51107;51108;51109;51110;51111;51112 51144;51145;51146;51147;51148;51149;51150;51151;51152;51153;51154;51155;51156;51157;51158;51159;51160;51161;51162;51163;51164;51165;51166;51167;51168;51169;51170 51166 699 27 FYTQQWEDYR LLKDGEDLMDESVLKFYTQQWEDYRFSSKV ESVLKFYTQQWEDYRFSSKVLNGICAYLNR K F Y Y R F 0 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 1 1 2 0 0 0 10 0 1434.6204 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4;A0A590UJA0;A0A590UJM8 A0A0C4DGX4 94 103 CUL1 Cullin-1 yes no 2 4.4862E-05 138.1 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1.0656 0.98018 13.597 6 Median 1.0149 0.96374 NaN 1 0 Median 1.1501 0.9969 NaN 1 0 Median 1.0395 1.1009 NaN 1 0 Median 1.2153 1.0473 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99932 0.80972 8.7356 2 0 Median 32522000 16002000 16520000 6797000 2996900 3800100 2765800 1402600 1363200 19843000 10161000 9681300 2725300 1243800 1481500 0 0 0 391350 197490 193860 10299 256 10720 51113;51114;51115;51116;51117;51118 51171;51172;51173;51174;51175 51172 5 FYVEDLK NMLGQPGSTALDLFKFYVEDLKARYHDEKK STALDLFKFYVEDLKARYHDEKKIIKDILK K F Y L K A 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 7 0 912.45928 O75400;A0A3F2YNY6 O75400 663 669 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.015644 70.912 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 3 1 1 1.143 1.1066 12.372 9 Median 1.143 1.1573 NaN 1 0 Median 1.1141 0.96192 NaN 1 0 Median 1.0915 1.1764 8.6549 2 0 Median 1.2957 1.0021 8.2471 3 0 Plateau 1.3387 1.3843 NaN 1 0 Median 1.2057 0.9994 NaN 1 0 Median 50939000 23754000 27185000 956740 464670 492060 2282300 1046700 1235500 32480000 15684000 16796000 9450100 4072800 5377300 4573900 1958300 2615600 1196500 527430 669080 10300 1670 10721 51119;51120;51121;51122;51123;51124;51125;51126;51127 51176;51177;51178;51179;51180 51176 5 FYVEDLKAR NMLGQPGSTALDLFKFYVEDLKARYHDEKK ALDLFKFYVEDLKARYHDEKKIIKDILKDK K F Y A R Y 1 1 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 1 1139.5975 O75400;A0A3F2YNY6 O75400 663 671 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.0067934 81.548 By MS/MS 1 0.85776 0.97247 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85776 0.97247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15458000 8004100 7454100 0 0 0 0 0 0 15458000 8004100 7454100 0 0 0 0 0 0 0 0 0 10301 1670 10722 51128 51181 51181 1 FYVGHDP FHETEAPRPKDFLSKFYVGHDP________ RPKDFLSKFYVGHDP_______________ K F Y D P - 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 7 0 833.3708 P56556;A0A2Y9D025;R4GN43 P56556 122 128 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes no 2 0.033294 62.338 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304500 0 0 0 0 0 5304500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10302 408 10723 51129 51182 51182 1 FYVHNDIFR MQTFVLAPEGSVANKFYVHNDIFRYQDEVF GSVANKFYVHNDIFRYQDEVFGGFVTEPQE K F Y F R Y 0 1 1 1 0 0 0 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 9 0 1209.5931 Q13283;E5RIZ6 Q13283 124 132 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 2;3 0.00021588 97.431 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 6 2 4 1 3 1.1797 1.0458 19.633 20 Median 1.1051 1.0385 20.071 5 0 Median 1.2091 1.0492 19.778 6 0 Median 1.172 1.1638 NaN 1 0 Median 1.1795 1.0204 8.1463 4 0 Median 1.4614 1.4716 NaN 1 0 Median 1.3836 1.1932 33.418 3 0 Median 156630000 71842000 84784000 91982000 42871000 49110000 28223000 13307000 14916000 22379000 9385800 12993000 6699500 3099400 3600100 2279900 973760 1306200 5062800 2204300 2858500 10303 2803 10724 51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148;51149;51150 51183;51184;51185;51186;51187;51188;51189;51190;51191;51192;51193;51194;51195;51196 51183 14 FYVHNDMFR MQTFVLAPEGSVPNKFYVHNDMFRYEDEVF GSVPNKFYVHNDMFRYEDEVFGDSEPELDE K F Y F R Y 0 1 1 1 0 0 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 0 9 0 1227.5495 Q9UN86;D6RAC7;D6RB17 Q9UN86 124 132 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 3 0.00086986 66.692 By MS/MS By matching By MS/MS By matching 2 2 1 2 1.1051 0.9607 25.138 7 Median 0.86892 0.8447 40.896 2 0 Median 1.0789 0.92348 5.5869 2 0 Median 1.2125 1.2625 NaN 1 0 Median 1.0208 0.88367 30.258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13227000 5943900 7283600 6273700 2647600 3626100 2739000 1470500 1268500 3665500 1557300 2108200 549190 268480 280710 0 0 0 0 0 0 10304 4341 10725 51151;51152;51153;51154;51155;51156;51157 51197;51198;51199;51200 51197 4 FYVPPTQEDGVDPVEAFAQNVLSK FHQNDDAEVSLMEVRFYVPPTQEDGVDPVE GVDPVEAFAQNVLSKADVIQATGDAICIFR R F Y S K A 2 0 1 2 0 2 2 1 0 0 1 1 0 2 3 1 1 0 1 4 0 0 24 0 2649.2962 Q08945;E9PMD4 Q08945 165 188 SSRP1 FACT complex subunit SSRP1 yes no 3 1.8854E-13 75.539 By MS/MS 1 0.74215 0.75697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74215 0.75697 NaN 1 1 Median NaN NaN NaN 0 0 Median 14322000 9052600 5269200 0 0 0 0 0 0 0 0 0 0 0 0 14322000 9052600 5269200 0 0 0 10305 2743 10726 51158 51201 51201 1 GAAAAAAASGAAGGGGGGAGAGAPGGGR ______________________________ GGGGGAGAGAPGGGRLLLSTSLDAKDELEE K G A G R L 12 1 0 0 0 0 0 13 0 0 0 0 0 0 1 1 0 0 0 0 0 0 28 0 1951.9209 Q68E01 Q68E01 8 35 INTS3 Integrator complex subunit 3 yes yes 2;3 1.482E-05 36.193 By MS/MS By MS/MS 1 2 1.0103 0.86076 33.764 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75427 0.80684 NaN 1 0 Median 1.3251 1.1331 38.876 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3989900 1844500 2145400 0 0 0 0 0 0 1834500 872830 961640 2155400 971620 1183800 0 0 0 0 0 0 10306 3126 10727 51159;51160;51161 51202;51203;51204;51205;51206 51205 4 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK PGSTTEDYNLIVIERGAAAAATGQPGTAPA GTPGAPPLAGMAIVKEEETEAAIGAPPTAT R G A V K E 10 0 0 0 0 1 0 6 0 1 1 1 1 0 5 0 3 0 0 1 0 0 30 0 2571.3479 Q13263;M0R0K9 Q13263 525 554 TRIM28 Transcription intermediary factor 1-beta yes no 3 4.23E-06 39.371 By MS/MS By matching By MS/MS By matching 1 2 2 1 0.41418 0.42786 12.425 6 Median 0.34394 0.33327 NaN 1 0 Median 0.48745 0.42827 3.0175 2 0 Median 0.41032 0.44064 1.2805 2 2 Median 0.41732 0.35409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33371000 24530000 8840800 9338800 6861500 2477300 1637600 1003600 633960 21926000 16376000 5549400 469020 288880 180140 0 0 0 0 0 0 10307 2802 10728 51162;51163;51164;51165;51166;51167 51207;51208;51209;51210 51209 4 GAADVEKVEEK EVKERTEEPMETEPKGAADVEKVEEKSAID TEPKGAADVEKVEEKSAIDLTPIVVEDKEE K G A E K S 2 0 0 1 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 2 0 0 11 1 1173.5877 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1637 1647 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00062686 118.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 0.96689 1.0517 10.059 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93685 1.075 3.0991 2 0 Median 1.1001 1.073 3.0807 2 0 Median 0.86747 0.92633 11.413 3 0 Median 1.1097 0.99848 19.498 2 0 Median 28010000 13564000 14447000 0 0 0 0 0 0 15125000 7474500 7650600 2205400 996530 1208900 9440800 4540900 4899900 1239200 551930 687220 10308 246 10729 51168;51169;51170;51171;51172;51173;51174;51175;51176 51211;51212;51213;51214;51215;51216;51217;51218;51219 51212 9 GAAFGFNVIATR FMNLANHHAMWNSRKGAAFGFNVIATRAGE SRKGAAFGFNVIATRAGEQLAPFLPQLVPR K G A T R A 3 1 1 0 0 0 0 2 0 1 0 0 0 2 0 0 1 0 0 1 0 0 12 0 1222.6459 Q5VYK3;J3KN16 Q5VYK3 1100 1111 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0014524 52.79 By MS/MS By matching 1 1 1.0993 1.1205 15.892 2 Median 1.0454 1.0014 NaN 1 0 Median 1.156 1.2538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5048100 2308800 2739200 4748700 2220200 2528500 299410 88654 210760 0 0 0 0 0 0 0 0 0 0 0 0 10309 3116 10730 51177;51178 51220 51220 1 GAAGALLVYDITR AGQESFRSITRSYYRGAAGALLVYDITRRD YRGAAGALLVYDITRRDTFNHLTTWLEDAR R G A T R R 3 1 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 1 1 0 0 13 0 1318.7245 P61019;E9PKL7;Q6PIK3;Q8WUD1;A0A3B3ITL1 P61019 78 90 RAB2A;RAB4B;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 2 5.9218E-07 128.17 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.2435 1.0103 26.739 5 Median 1.0399 0.98734 NaN 1 0 Median 1.2613 1.0843 NaN 1 0 Median 1.052 0.9852 NaN 1 0 Median 1.2435 1.0103 NaN 1 0 Median 1.8849 1.8357 NaN 1 1 Median NaN NaN NaN 0 0 Median 19606000 9734900 9871500 16947000 8579800 8366900 88282 45061 43221 1399000 687860 711130 145240 54106 91136 1027100 368010 659080 0 0 0 10310 2537;3489 10731 51179;51180;51181;51182;51183 51221;51222;51223;51224;51225;51226 51223 6 GAAGALLVYDITRR AGQESFRSITRSYYRGAAGALLVYDITRRD RGAAGALLVYDITRRDTFNHLTTWLEDARQ R G A R R D 3 2 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 1 1 0 0 14 1 1474.8256 P61019;E9PKL7;Q8WUD1;A0A3B3ITL1 P61019 78 91 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 2;3 2.2913E-06 90.793 By MS/MS By matching 2 2 1.1269 1.0311 10.002 4 Median 0.94805 1.0134 16.961 2 0 Median 1.2141 1.0311 3.0766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20198000 10439000 9759400 18593000 9676300 8916400 1605400 762480 842950 0 0 0 0 0 0 0 0 0 0 0 0 10311 2537;3489 10732 51184;51185;51186;51187 51227;51228;51229 51228 3 GAAGALMVYDITR AGQERFRAVTRSYYRGAAGALMVYDITRRS YRGAAGALMVYDITRRSTYNHLSSWLTDAR R G A T R R 3 1 0 1 0 0 0 2 0 1 1 0 1 0 0 0 1 0 1 1 0 0 13 0 1336.6809 P61106;X6RFL8 P61106 83 95 RAB14 Ras-related protein Rab-14 yes no 2 1.3134E-06 133.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 3 1.1463 1.0056 16.32 12 Median 1.0732 1.0218 20.649 3 1 Plateau 1.1912 1.0162 0.85612 3 0 Plateau 1.0477 1.0068 2.9932 2 2 Median 1.1041 0.91231 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3566 1.1459 20.165 3 0 Median 148870000 70405000 78468000 114580000 54467000 60110000 8809900 4071100 4738800 16506000 8077400 8428500 1149300 500520 648800 0 0 0 7830700 3288700 4542000 10312 2545 10733;10734 51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199 51230;51231;51232;51233;51234;51235;51236;51237;51238 51232 1220 9 GAAGALMVYDITRR AGQERFRAVTRSYYRGAAGALMVYDITRRS RGAAGALMVYDITRRSTYNHLSSWLTDARN R G A R R S 3 2 0 1 0 0 0 2 0 1 1 0 1 0 0 0 1 0 1 1 0 0 14 1 1492.782 P61106;X6RFL8 P61106 83 96 RAB14 Ras-related protein Rab-14 yes no 2 2.7639E-05 96.331 By MS/MS 1 6.0202 6.4352 NaN 1 Median 6.0202 6.4352 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202910000 15602000 187310000 202910000 15602000 187310000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10313 2545 10735 51200 51239 51239 1 GAAGAVTQSLSR AVPPPAPGTPTGLPKGAAGAVTQSLSRTPT LPKGAAGAVTQSLSRTPTATTSGIRATLTP K G A S R T 3 1 0 0 0 1 0 2 0 0 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1116.5887 O00268 O00268 403 414 TAF4 Transcription initiation factor TFIID subunit 4 yes yes 2 0.00077584 90.108 By MS/MS 1 1.0304 1.1292 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0304 1.1292 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470600 1316300 1154400 0 0 0 0 0 0 2470600 1316300 1154400 0 0 0 0 0 0 0 0 0 10314 1453 10736 51201 51240 51240 1 GAAGDWGER EVDSRVADNSFDAKRGAAGDWGERANQVLK SFDAKRGAAGDWGERANQVLKFTKGKSFRH R G A E R A 2 1 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 9 0 917.39914 A0A0A0MRM9;Q14978 A0A0A0MRM9 658 666 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0074886 61.962 By MS/MS By MS/MS By MS/MS 1 1 1 1.2331 1.2707 11.323 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1837 1.2707 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2331 1.3098 NaN 1 1 Median 1.2978 1.0622 NaN 1 0 Median 4408000 1963400 2444500 0 0 0 0 0 0 1439100 674100 765030 0 0 0 2167800 934490 1233300 801000 354860 446140 10315 165 10737 51202;51203;51204 51241;51242;51243 51241 3 GAAGRPLELSDFR STPTGISASCRRPIKGAAGRPLELSDFRME IKGAAGRPLELSDFRMEESFSSKYVPKYVP K G A F R M 2 2 0 1 0 0 1 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 13 1 1387.7208 P42167;G5E972;H0YJH7 P42167 369 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2;3 2.2822E-06 107.83 By MS/MS By MS/MS By MS/MS By MS/MS 8 5 9 8 1.0303 1.0473 23.791 30 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83299 0.89358 16.337 8 0 Median 1.1371 1.0462 28.833 5 0 Median 0.93284 1.0131 19.129 9 1 Median 1.6237 1.3914 15.116 8 0 Median 485480000 245330000 240140000 0 0 0 0 0 0 237580000 124720000 112860000 11002000 5078700 5923100 149520000 78735000 70782000 87379000 36802000 50577000 10316 2307 10738 51205;51206;51207;51208;51209;51210;51211;51212;51213;51214;51215;51216;51217;51218;51219;51220;51221;51222;51223;51224;51225;51226;51227;51228;51229;51230;51231;51232;51233;51234 51244;51245;51246;51247;51248;51249;51250;51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274 51262 31 GAALDVHESEPFSFAQGPLK DEKALAQALKEGRIRGAALDVHESEPFSFA VHESEPFSFAQGPLKDAPNLICTPHTAWYS R G A L K D 3 0 0 1 0 1 2 2 1 0 2 1 0 2 2 2 0 0 0 1 0 0 20 0 2099.0324 P56545 P56545 292 311 CTBP2 C-terminal-binding protein 2 yes yes 2;3 3.0912E-25 123.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 0.74061 0.71418 49.18 7 Median 0.6877 0.66009 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74061 0.78363 73.633 3 1 Median 1.0442 0.93821 NaN 1 0 Median 0.66023 0.63271 NaN 1 1 Median 0.85663 0.71418 NaN 1 0 Median 98654000 52276000 46378000 2755800 1559700 1196100 0 0 0 84602000 44947000 39655000 8953600 4329500 4624100 1988700 1180400 808300 353910 259510 94397 10317 2514 10739 51235;51236;51237;51238;51239;51240;51241 51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285 51280 11 GAALDVHESEPFSFSQGPLK DEKALAQALKEGRIRGAALDVHESEPFSFS VHESEPFSFSQGPLKDAPNLICTPHAAWYS R G A L K D 2 0 0 1 0 1 2 2 1 0 2 1 0 2 2 3 0 0 0 1 0 0 20 0 2115.0273 Q13363;H0Y8W7;H0Y8U5 Q13363 286 305 CTBP1 C-terminal-binding protein 1 yes no 2;3 5.2423E-14 99.413 By matching By MS/MS By MS/MS By matching 2 3 2 1 0.75929 0.71099 16.585 8 Median NaN NaN NaN 0 0 Median 0.83811 0.75141 25.48 2 0 Median 0.68299 0.68068 6.6039 3 1 Median 1.0553 0.91903 4.9693 2 0 Median NaN NaN NaN 0 0 Median 0.81976 0.69537 NaN 1 0 Median 61879000 35832000 26047000 0 0 0 644940 348630 296310 58445000 34140000 24305000 2627300 1309500 1317800 0 0 0 161670 34386 127280 10318 2808 10740 51242;51243;51244;51245;51246;51247;51248;51249 51286;51287;51288;51289;51290;51291;51292 51287 7 GAALITAVGVR KCNVSFLLSEDGSGKGAALITAVGVRLRTE GSGKGAALITAVGVRLRTEASS________ K G A V R L 3 1 0 0 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1026.6186 P19367 P19367 900 910 HK1 Hexokinase-1 yes yes 2 0.00017207 97.431 By MS/MS By MS/MS By MS/MS 2 3 2 1.4638 1.2659 22.356 7 Median 0.97734 0.95545 16.513 2 1 Median 1.4638 1.2659 7.5826 3 0 Median NaN NaN NaN 0 0 Median 1.8396 1.5741 9.8474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37588000 15688000 21901000 21973000 9585800 12387000 11712000 4768100 6944200 0 0 0 3902900 1333700 2569200 0 0 0 0 0 0 10319 2064 10741 51250;51251;51252;51253;51254;51255;51256 51293;51294;51295;51296;51297;51298 51294 6 GAAMVTAVAYR DSDVRFLLSESGSGKGAAMVTAVAYRLAEQ GSGKGAAMVTAVAYRLAEQHRQIEETLAHF K G A Y R L 4 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 2 0 0 11 0 1108.5699 P19367;E9PB90;P52789 P19367 452 462 HK1;HK2 Hexokinase-1;Hexokinase;Hexokinase-2 no no 2 2.0842E-05 126.41 By MS/MS By MS/MS By matching By MS/MS By matching 2 4 1 2 1 1.3107 1.1998 19.503 8 Median 1.2444 1.1998 1.1005 2 0 Median 1.3988 1.1853 13.862 3 1 Plateau 1.7839 1.8742 NaN 1 0 Median 1.379 1.1881 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3219 1.2688 NaN 1 0 Median 110940000 49412000 61526000 43511000 18230000 25281000 45122000 20354000 24768000 19274000 9766000 9508500 1643300 654060 989280 0 0 0 1386500 407900 978640 10320 2064;908 10742;10743 51257;51258;51259;51260;51261;51262;51263;51264;51265;51266 51299;51300;51301;51302;51303;51304;51305 51303 329 7 GAAPNVVYTYTGK YMDTLPPTVGDDVGKGAAPNVVYTYTGKRI GKGAAPNVVYTYTGKRIALYIGNLTWWTTD K G A G K R 2 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 2 0 2 2 0 0 13 0 1339.6772 F8WJN3;Q16630;F8W084;A0A3B3ISW1 F8WJN3 67 79 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 6.9595E-07 104.22 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 0.87785 0.81774 32.95 7 Median 1.053 1.1699 NaN 1 0 Median 1.1702 1.0727 53.471 2 0 Median 0.72456 0.70453 21.073 2 1 Median 0.81303 0.68561 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0407 0.85915 NaN 1 0 Median 270310000 143490000 126820000 4597500 1909200 2688200 13327000 8307800 5019500 215190000 114990000 100200000 35373000 17540000 17833000 0 0 0 1821000 745190 1075800 10321 1099 10744 51267;51268;51269;51270;51271;51272;51273;51274 51306;51307;51308;51309;51310;51311;51312;51313;51314;51315 51306 10 GAAPNVVYTYTGKR YMDTLPPTVGDDVGKGAAPNVVYTYTGKRI KGAAPNVVYTYTGKRIALYIGNLTWWTTDE K G A K R I 2 1 1 0 0 0 0 2 0 0 0 1 0 0 1 0 2 0 2 2 0 0 14 1 1495.7783 F8WJN3;Q16630;F8W084;A0A3B3ISW1 F8WJN3 67 80 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2;3 0.00019372 68.069 By MS/MS By matching By MS/MS 2 2 2 1.2418 1.1583 18.041 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98566 1.0471 0.086328 2 1 Median 1.2644 1.3091 30.703 2 0 Median NaN NaN NaN 0 0 Median 1.4456 1.3105 4.0532 2 1 Median 22543000 10664000 11878000 0 0 0 0 0 0 13480000 6841300 6638700 3442300 1457200 1985000 0 0 0 5620300 2365600 3254600 10322 1099 10745 51275;51276;51277;51278;51279;51280 51316;51317;51318;51319;51320 51319 5 GAASTLVPGVSETSASPGSPSVR VVEEKELVRRRRQQRGAASTLVPGVSETSA GVSETSASPGSPSVRSMSGPESSPPIGGPC R G A V R S 3 1 0 0 0 0 1 3 0 0 1 0 0 0 3 6 2 0 0 3 0 0 23 0 2113.0651 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 2772 2794 SRCAP Helicase SRCAP yes no 2 3.148E-19 87.519 By MS/MS By matching 1 1 0.61394 0.58957 2.4438 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56572 0.59984 NaN 1 0 Median 0.66626 0.57947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8331800 4912100 3419700 0 0 0 0 0 0 7580200 4500700 3079400 751650 411370 340280 0 0 0 0 0 0 10323 3199 10746 51281;51282 51321;51322 51321 2 GAAVDEYFR WYQPSFHGVDLSALRGAAVDEYFRQPVVDT DLSALRGAAVDEYFRQPVVDTFDIRILMAK R G A F R Q 2 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 9 0 1026.4771 Q86X55;K7EQA8 Q86X55 328 336 CARM1 Histone-arginine methyltransferase CARM1 yes no 2 0.000446 126.67 By MS/MS By MS/MS 1 2 1.059 0.90105 13.052 3 Median 0.89096 0.88603 NaN 1 0 Median 1.1687 1.0044 15.358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12756000 6266900 6489300 6574300 3300100 3274300 6181900 2966900 3215000 0 0 0 0 0 0 0 0 0 0 0 0 10324 3299 10747 51283;51284;51285 51323;51324;51325 51323 3 GAAVNLTLVTPEK LIKTVRSEGYFGMYRGAAVNLTLVTPEKAI YRGAAVNLTLVTPEKAIKLAANDFFRHQLS R G A E K A 2 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 2 0 0 2 0 0 13 0 1311.7398 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;K4DIA8;K4DIB8;K4DIB3;K4DIB6;E9PQ36;E9PI74;A0A0D9SG84;K4DIA2;K4DIB0;A0A0D9SFA8;Q9H1K4 Q9H936 68 80 SLC25A22;SLC25A18 Mitochondrial glutamate carrier 1;Mitochondrial glutamate carrier 2 yes no 2 0.00034725 76.143 By MS/MS By matching By matching 1 1 1 0.89493 0.81547 24.074 3 Median 0.89493 0.81547 NaN 1 0 Median 1.23 1.0338 NaN 1 0 Median 0.66189 0.63874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22796000 12062000 10734000 17761000 9444300 8316300 3312500 1572700 1739800 1722900 1044700 678240 0 0 0 0 0 0 0 0 0 10325 943 10748 51286;51287;51288 51326 51326 1 GAAYGLAGLVK LMQQLLESDKYAERKGAAYGLAGLVKGLGI AERKGAAYGLAGLVKGLGILSLKQQEMMAA K G A V K G 3 0 0 0 0 0 0 3 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1018.5811 Q92616 Q92616 1396 1406 GCN1L1 Translational activator GCN1 yes yes 2 0.077861 24.155 By MS/MS By matching By matching 1 3 2 1.1039 1.0536 15.294 6 Median NaN NaN NaN 0 0 Median 1.1107 0.98652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0391 1.146 22.202 3 0 Median 1.1982 1.042 10.874 2 0 Median 11340000 5206600 6133700 0 0 0 3211400 1464800 1746600 0 0 0 0 0 0 6916800 3222500 3694300 1212100 519300 692790 10326 3544 10749 51289;51290;51291;51292;51293;51294 51327 51327 1 GADDAADADTAIINAEGGQNNSEEKK YFARHKGTYFTHEAKGADDAADADTAIINA IINAEGGQNNSEEKKEYFI___________ K G A K K E 6 0 3 4 0 1 3 3 0 2 0 2 0 0 0 1 1 0 0 0 0 0 26 1 2603.1583 A0A087X1W8;A0A0A0MTJ8;X5DQS5;Q9BY67 A0A087X1W8 383 408 CADM1 Cell adhesion molecule 1 yes no 3 0.023806 12.787 By MS/MS By matching 1 1 1.0228 1.0218 22.758 2 Median 1.1626 1.2002 NaN 1 0 Median 0.89972 0.86988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4839500 2188100 2651400 3436000 1538100 1897900 1403500 650040 753480 0 0 0 0 0 0 0 0 0 0 0 0 10327 124 10750 51295;51296 51328 51328 1 GADFLVTEVENGGSLGSK IYVDDGLISLQVKQKGADFLVTEVENGGSL FLVTEVENGGSLGSKKGVNLPGAAVDLPAV K G A S K K 1 0 1 1 0 0 2 4 0 0 2 1 0 1 0 2 1 0 0 2 0 0 18 0 1778.8687 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 189 206 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 3.7532E-15 162.32 By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 1.1396 1.0281 10.873 9 Median 1.1551 1.0614 NaN 1 0 Median 1.1031 0.94181 11.921 4 1 Median 1.157 1.1938 3.2463 2 0 Median 1.1679 1.0035 3.4321 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 233650000 104530000 129120000 144100000 64288000 79808000 54224000 24982000 29242000 32439000 14019000 18421000 2889400 1238700 1650700 0 0 0 0 0 0 10328 2005;1237 10751 51297;51298;51299;51300;51301;51302;51303;51304;51305 51329;51330;51331;51332;51333;51334;51335;51336;51337 51329 9 GADFLVTEVENGGSLGSKK IYVDDGLISLQVKQKGADFLVTEVENGGSL LVTEVENGGSLGSKKGVNLPGAAVDLPAVS K G A K K G 1 0 1 1 0 0 2 4 0 0 2 2 0 1 0 2 1 0 0 2 0 0 19 1 1906.9636 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 189 207 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3 9.7606E-05 38.017 By MS/MS By matching 4 3 1.212 1.1521 66.666 7 Median 1.1461 1.1294 86.475 4 1 Median 1.2212 1.1521 21.221 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54287000 27545000 26742000 50465000 26114000 24351000 3822100 1431400 2390700 0 0 0 0 0 0 0 0 0 0 0 0 10329 2005;1237 10752 51306;51307;51308;51309;51310;51311;51312 51338;51339 51339 2 GADILAYPPVVAGGNR EAFLYAKFEFECRARGADILAYPPVVAGGN ADILAYPPVVAGGNRSNTLHYVKNNQLIKD R G A N R S 3 1 1 1 0 0 0 3 0 1 1 0 0 0 2 0 0 0 1 2 0 0 16 0 1568.8311 Q9NQH7 Q9NQH7 294 309 XPNPEP3 Probable Xaa-Pro aminopeptidase 3 yes yes 2 9.7273E-05 72.006 By MS/MS 1 0.94458 0.94232 NaN 1 Median 0.94458 0.94232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3196500 1955300 1241200 3196500 1955300 1241200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10330 4063 10753 51313 51340;51341 51340 2 GADIMYTGTVDCWR FDTVRRRMMMQSGRKGADIMYTGTVDCWRK KGADIMYTGTVDCWRKIFRDEGGKAFFKGA K G A W R K 1 1 0 2 1 0 0 2 0 1 0 0 1 0 0 0 2 1 1 1 0 0 14 0 1643.7072 P12235;P12236 P12236 246 259 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.0097685 34.378 By matching By MS/MS 1 3 1.3381 1.1929 18.635 4 Median 1.1981 1.2126 NaN 1 0 Median 1.388 1.1735 22.501 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7383000 3121600 4261400 2138600 1016900 1121700 5244400 2104700 3139800 0 0 0 0 0 0 0 0 0 0 0 0 10331 1977;1976 10754 51314;51315;51316;51317 51342;51343 51342 2 GADKIEGAIDIR TFQVKLETRQITWSRGADKIEGAIDIREIK WSRGADKIEGAIDIREIKEIRPGKTSRDFD R G A I R E 2 1 0 2 0 0 1 2 0 3 0 1 0 0 0 0 0 0 0 0 0 0 12 1 1256.6725 P19174 P19174 65 76 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2;3 9.7813E-05 82.543 By MS/MS 2 1.1759 1.1878 6.3381 2 Median 1.1759 1.1878 6.3381 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8946200 3913100 5033100 8946200 3913100 5033100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10332 2062 10755 51318;51319 51344;51345;51346 51344 3 GADSELSTVPSVTK HPKKASFQKLNGISKGADSELSTVPSVTKT KGADSELSTVPSVTKTQASSSFQDSSQPAG K G A T K T 1 0 0 1 0 0 1 1 0 0 1 1 0 0 1 3 2 0 0 2 0 0 14 0 1389.6987 P46087 P46087 656 669 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00022236 77.062 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 0.97943 0.9423 13.374 8 Median NaN NaN NaN 0 0 Median 1.12 0.96259 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87834 0.74297 NaN 1 0 Median 0.909 0.92244 3.5871 3 1 Median 1.256 1.0313 17.752 3 0 Median 63414000 30589000 32825000 0 0 0 4136000 1868000 2268000 0 0 0 1810100 1034200 775910 46210000 23182000 23028000 11258000 4505400 6752600 10333 2338 10756 51320;51321;51322;51323;51324;51325;51326;51327 51347;51348;51349;51350;51351;51352;51353;51354;51355;51356;51357;51358;51359;51360 51355 14 GADTAPTLAPEALPSQGEVER GLLLEVEEPGTEEERGADTAPTLAPEALPS TLAPEALPSQGEVEREGESPAAGPPPQELV R G A E R E 4 1 0 1 0 1 3 2 0 0 2 0 0 0 3 1 2 0 0 1 0 0 21 0 2108.0386 Q8IZL8;C9JFV4 Q8IZL8 1019 1039 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 2.3436E-26 154.72 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.635 0.62289 9.8811 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57318 0.63014 NaN 1 0 Median 0.73693 0.63285 19.264 2 0 Median 0.58445 0.61383 10.25 2 1 Median 0.73616 0.61573 NaN 1 0 Median 28232000 17631000 10601000 0 0 0 0 0 0 17564000 11105000 6459000 1574500 860750 713740 8822600 5506800 3315800 270950 158760 112190 10334 3351 10757 51328;51329;51330;51331;51332;51333 51361;51362;51363;51364;51365 51361 5 GADVFLEALAR TLYFFIAGRYEFSNKGADVFLEALARLNYL FSNKGADVFLEALARLNYLLRVNGSEQTVV K G A A R L 3 1 0 1 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1160.619 P13807 P13807 338 348 GYS1 Glycogen [starch] synthase, muscle yes yes 2 0.0019387 56.258 By MS/MS By MS/MS By matching 1 1 1 0.90493 0.88523 5.0353 3 Plateau 0.90493 0.88819 NaN 1 0 Median 1.0084 0.87582 NaN 1 0 Median 0.69278 0.80901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5295500 2504100 2791400 2511500 1182700 1328800 2232700 1095800 1136900 551400 225660 325740 0 0 0 0 0 0 0 0 0 10335 1997 10758 51334;51335;51336 51366;51367;51368 51366 3 GADVNAPPVPSSR ASGGYAEVGRVLLDKGADVNAPPVPSSRDT DKGADVNAPPVPSSRDTALTIAADKGHYKF K G A S R D 2 1 1 1 0 0 0 1 0 0 0 0 0 0 3 2 0 0 0 2 0 0 13 0 1265.6364 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1192 1204 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.0022747 48.44 By matching By MS/MS 1 1 0.77012 0.70463 3.2076 2 Median 0.6867 0.68883 NaN 1 0 Median 0.86367 0.7208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2680800 1261500 1419300 1116700 522170 594510 1564100 739360 824760 0 0 0 0 0 0 0 0 0 0 0 0 10336 1197;3329 10759 51337;51338 51369;51370 51369 2 GAEAANVTGPDGVPVEGSR GDGETVEFDVVEGEKGAEAANVTGPDGVPV ANVTGPDGVPVEGSRYAADRRRYRRGYYGR K G A S R Y 3 1 1 1 0 0 2 4 0 0 0 0 0 0 2 1 1 0 0 3 0 0 19 0 1781.8544 P16989;A0A0D9SEI8 P16989 151 169 YBX3 Y-box-binding protein 3 yes no 2 1.3869E-20 161.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1 3 0.84025 0.72397 18.788 13 Median 0.49924 0.48686 17.465 2 0 Median 0.94688 0.79949 11.63 2 0 Median 0.62527 0.63634 5.3525 2 0 Median 0.86125 0.73791 12.284 3 0 Median 0.76129 0.7627 NaN 1 0 Median 0.84314 0.72397 4.8241 3 0 Median 62439000 35127000 27312000 12206000 7527200 4678700 10743000 5774800 4968500 9283700 5308300 3975400 15248000 8328700 6919600 8452200 4904200 3548000 6505600 3283300 3222300 10337 2033 10760 51339;51340;51341;51342;51343;51344;51345;51346;51347;51348;51349;51350;51351 51371;51372;51373;51374;51375;51376;51377;51378;51379;51380;51381;51382;51383;51384;51385;51386;51387;51388;51389 51384 19 GAEAANVTGPGGVPVQGSK GDGETVEFDVVEGEKGAEAANVTGPGGVPV ANVTGPGGVPVQGSKYAADRNHYRRYPRRR K G A S K Y 3 0 1 0 0 1 1 5 0 0 0 1 0 0 2 1 1 0 0 3 0 0 19 0 1694.8588 P67809;H0Y449 P67809 119 137 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 1.7461E-24 169.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 3 1 4 0.84629 0.7115 20.9 14 Median 0.85213 0.78547 NaN 1 0 Median 0.81572 0.69368 4.7501 4 2 Median 1.0815 1.0422 NaN 1 0 Median 1.1362 0.98093 8.8711 3 0 Median 0.64194 0.61318 NaN 1 1 Median 0.80605 0.65557 14.407 4 0 Median 163780000 87064000 76713000 27556000 13853000 13703000 39073000 20601000 18472000 15365000 7715400 7649300 26114000 12132000 13982000 18243000 11033000 7209800 37427000 21730000 15697000 10338 2627 10761 51352;51353;51354;51355;51356;51357;51358;51359;51360;51361;51362;51363;51364;51365 51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415 51402 26 GAEADQIIEYLK ______________________________ EQKGAEADQIIEYLKQQVSLLKEKAILQAT K G A L K Q 2 0 0 1 0 1 2 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1348.6874 Q12904;D6R937 Q12904 15 26 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes no 2 3.2995E-05 125.56 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.0538 0.89262 22.87 5 Median 1.3318 1.2345 NaN 1 0 Median 1.1585 0.98723 NaN 1 0 Median 0.84874 0.8123 NaN 1 0 Median 1.0538 0.89262 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84573 0.66652 NaN 1 0 Median 32682000 13653000 19030000 12048000 4245500 7802500 13075000 5963800 7111200 4172500 1868700 2303800 3273200 1514900 1758300 0 0 0 113530 59835 53694 10339 2768 10762 51366;51367;51368;51369;51370 51416;51417;51418;51419 51419 3 GAEEMETVIPVDVMR ______________________________ GAEEMETVIPVDVMRRAGIKVTVAGLAGKD K G A M R R 1 1 0 1 0 0 3 1 0 1 0 0 2 0 1 0 1 0 0 3 0 0 15 0 1674.7957 Q99497;K7ELW0 Q99497 13 27 PARK7 Protein deglycase DJ-1 yes no 2;3 5.196E-10 114.86 By MS/MS By MS/MS By MS/MS By matching 4 5 3 1 0.98116 0.89939 9.4586 13 Median 0.96237 0.92406 4.1743 4 0 Median 1.1051 0.92533 13.243 5 0 Median 0.90775 0.87215 7.7544 3 0 Median 1.051 0.86153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 250500000 122930000 127570000 202760000 100430000 102330000 26619000 12291000 14328000 20753000 10047000 10706000 369260 158000 211260 0 0 0 0 0 0 10340 3749 10763;10764 51371;51372;51373;51374;51375;51376;51377;51378;51379;51380;51381;51382;51383 51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437 51434 1820 18 GAEEWILTGSYDK PEQCMFHDDWISSIKGAEEWILTGSYDKTS IKGAEEWILTGSYDKTSRIWSLEGKSIMTI K G A D K T 1 0 0 1 0 0 2 2 0 1 1 1 0 0 0 1 1 1 1 0 0 0 13 0 1467.6882 Q9GZL7 Q9GZL7 109 121 WDR12 Ribosome biogenesis protein WDR12 yes yes 2 0.00077673 65.5 By MS/MS 1 1.1103 1.0588 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1103 1.0588 NaN 1 0 Median NaN NaN NaN 0 0 Median 8381200 3724500 4656700 0 0 0 0 0 0 0 0 0 0 0 0 8381200 3724500 4656700 0 0 0 10341 3908 10765 51384 51438;51439 51439 2 GAEGILAPQPPPPQQHQERPGAAAIGSAR PCLGPVAAAGSGLRRGAEGILAPQPPPPQQ QHQERPGAAAIGSARGQSTGKGPPQSPVFE R G A A R G 6 2 0 0 0 4 2 4 1 2 1 0 0 0 6 1 0 0 0 0 0 0 29 1 2900.5005 Q8WWM7;H3BUF6 Q8WWM7 72 100 ATXN2L Ataxin-2-like protein yes no 4 0.0089857 20.043 By MS/MS 1 0.29921 0.29292 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29921 0.29292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3810200 2635600 1174600 0 0 0 0 0 0 0 0 0 3810200 2635600 1174600 0 0 0 0 0 0 10342 3511 10766 51385 51440 51440 1 GAEHITTYTFNTHK NRHFIVPASRFKLLKGAEHITTYTFNTHKA KGAEHITTYTFNTHKAQHTFCKRCGVQSFY K G A H K A 1 0 1 0 0 0 1 1 2 1 0 1 0 1 0 0 4 0 1 0 0 0 14 0 1618.774 Q7Z7K6 Q7Z7K6 197 210 CENPV Centromere protein V yes yes 3;4 0.00013435 68.83 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 3 2 0.9876 0.96128 34.074 11 Median NaN NaN NaN 0 0 Median 1.5393 1.3013 13.956 2 0 Median 0.75853 0.73177 NaN 1 0 Median 1.9583 1.6519 6.1408 3 0 Plateau 0.88094 0.8836 11.007 3 0 Median 0.87836 0.72215 14.722 2 0 Median 70415000 34437000 35979000 0 0 0 3231400 1391400 1839900 1743600 824300 919280 9602900 3452200 6150700 46253000 24208000 22045000 9584200 4560800 5023400 10343 3261 10767 51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396 51441;51442;51443;51444;51445;51446;51447;51448;51449 51445 9 GAEIEYAMAYSK GKSYLYFTQFKAEVRGAEIEYAMAYSKAAF EVRGAEIEYAMAYSKAAFERESDVPLKTEE R G A S K A 3 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 2 0 0 0 12 0 1331.6068 Q969H8;M0QXF7;M0QYN0 Q969H8 114 125 MYDGF Myeloid-derived growth factor yes no 2 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By matching 1 4 1 1 1.1858 1.044 41.768 7 Median 1.1326 1.0633 NaN 1 0 Median 1.2357 1.0294 38.823 4 1 Median 1.1826 1.1309 NaN 1 0 Median 0.62687 0.52495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97181000 43436000 53745000 53372000 24832000 28540000 29802000 12093000 17709000 13163000 5985600 7177800 843420 524890 318540 0 0 0 0 0 0 10344 3583 10768;10769 51397;51398;51399;51400;51401;51402;51403 51450;51451;51452;51453;51454;51455;51456;51457;51458;51459;51460;51461 51454 1785 12 GAEILADTFKDYAVSTVPVADGLHLK GREFFVGLSKRTNQRGAEILADTFKDYAVS YAVSTVPVADGLHLKSFCSMAGPNLIAIGS R G A L K S 4 0 0 3 0 0 1 2 1 1 3 2 0 1 1 1 2 0 1 3 0 0 26 1 2729.4276 O94760;B4DYP1 O94760 150 175 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 4 5.8884E-06 40.142 By MS/MS 1 0.89998 0.81068 NaN 1 Median NaN NaN NaN 0 0 Median 0.89998 0.81068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4663300 2291800 2371400 0 0 0 4663300 2291800 2371400 0 0 0 0 0 0 0 0 0 0 0 0 10345 1722 10770 51404 51462 51462 0 GAEILEVLHSLPAVR MIALERPDLREKVIKGAEILEVLHSLPAVR GAEILEVLHSLPAVRQYLFSLYECRYSVFF K G A V R Q 2 1 0 0 0 0 2 1 1 1 3 0 0 0 1 1 0 0 0 2 0 0 15 0 1602.9093 Q15008;H7C531 Q15008 243 257 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2;3 1.2493E-208 292.06 By MS/MS By MS/MS By MS/MS 3 7 2 1.095 0.98508 24.168 12 Median 1.0027 0.99749 41.809 3 1 Median 1.0996 0.95721 16.487 7 1 Median 1.1134 1.1975 3.162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87522000 41868000 45654000 9237600 3675000 5562600 75012000 36595000 38418000 3271600 1598100 1673500 0 0 0 0 0 0 0 0 0 10346 2911 10771 51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415;51416 51463;51464;51465;51466;51467;51468 51468 6 GAENFDKFFTR NREIQPPFKPKVCGKGAENFDKFFTRGQPV VCGKGAENFDKFFTRGQPVLTPPDQLVIAN K G A T R G 1 1 1 1 0 0 1 1 0 0 0 1 0 3 0 0 1 0 0 0 0 0 11 1 1330.6306 P17252 P17252 622 632 PRKCA Protein kinase C alpha type yes yes 3 0.0037735 38.021 By MS/MS By matching 1 1 0.9778 1.0221 19.714 2 Median 1.1485 1.175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83247 0.88909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4356700 2336500 2020100 2306900 1204400 1102500 0 0 0 2049800 1132100 917630 0 0 0 0 0 0 0 0 0 10347 2039 10772 51417;51418 51469 51469 1 GAEQDNPNQYSWGENYAGSSGLMSASPELGPAQR LRHEGYLGAIGAFLKGAEQDNPNQYSWGEN SGLMSASPELGPAQRARSGTFDLLEMDRLE K G A Q R A 4 1 3 1 0 3 3 5 0 0 2 0 1 0 3 5 0 1 2 0 0 0 34 0 3567.5597 E9PHT6;A0A494C169;Q9NVE7;H0YA26;H0YA31 E9PHT6 329 362 PANK4 Pantothenate kinase 4 yes no 3 0.044291 9.0863 By MS/MS 1 0.46834 0.46468 NaN 1 Median 0.46834 0.46468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1397800 748430 649330 1397800 748430 649330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10348 466 10773 51419 51470 51470 1 GAEQLAEGGR NSLQLHGLQLRIATRGAEQLAEGGRMVYST RIATRGAEQLAEGGRMVYSTCSLNPIEDEA R G A G R M 2 1 0 0 0 1 2 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 986.47812 Q08J23 Q08J23 306 315 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.00070879 107.57 By MS/MS By MS/MS 1 1 1.3058 1.2065 20.689 2 Median 1.4139 1.3966 NaN 1 0 Median 1.206 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8978900 3887100 5091800 2108500 902870 1205600 6870400 2984200 3886200 0 0 0 0 0 0 0 0 0 0 0 0 10349 2745 10774 51420;51421 51471;51472;51473;51474 51473 4 GAESPFEEK AYESFLSADDKASGRGAESPFEEKSGKQGS DKASGRGAESPFEEKSGKQGSPDQVSPVSE R G A E K S 1 0 0 0 0 0 3 1 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 0 992.44509 P46821 P46821 1424 1432 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.003683 63.419 By matching By MS/MS 1 1 0.90499 0.91757 18.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9486 1.0477 NaN 1 0 Median 0.86338 0.80362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1539900 641280 898580 0 0 0 0 0 0 877030 300940 576090 662830 340340 322490 0 0 0 0 0 0 10350 2347 10775 51422;51423 51475 51475 1 GAESSGDMDVLLTHPSFTSESTK VDSEYIATVCGSFRRGAESSGDMDVLLTHP DVLLTHPSFTSESTKQPKLLHQVVEQLQKV R G A T K Q 1 0 0 2 0 0 2 2 1 0 2 1 1 1 1 5 3 0 0 1 0 0 23 0 2395.0849 P06746;E7EW18;H0YBJ0;H0YBX1 P06746 184 206 POLB DNA polymerase beta yes no 3 0.010214 19.044 By MS/MS 1 0.6802 0.71696 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6802 0.71696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5578400 2962200 2616200 0 0 0 0 0 0 5578400 2962200 2616200 0 0 0 0 0 0 0 0 0 10351 1876 10776 51424 51476;51477 51476 2 GAETLVTR MNSPELLLLVENCPKGAETLVTRCLHSLTD LVENCPKGAETLVTRCLHSLTDKVPPSPEL K G A T R C 1 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 8 0 845.46068 Q92797;A0A087WUE9 Q92797 851 858 SYMPK Symplekin yes no 2 0.0078694 65.252 By MS/MS 1 0.94874 1.0326 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94874 1.0326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1676000 883550 792420 0 0 0 0 0 0 1676000 883550 792420 0 0 0 0 0 0 0 0 0 10352 3558 10777 51425 51478 51478 1 GAEWHSHLGSMK CPNKSDENIPGGVMRGAEWHSHLGSMKDYS VMRGAEWHSHLGSMKDYSVTYGHCPEITVY R G A M K D 1 0 0 0 0 0 1 2 2 0 1 1 1 0 0 2 0 1 0 0 0 0 12 0 1338.6139 O75976 O75976 1155 1166 CPD Carboxypeptidase D yes yes 3 0.00015939 73.435 By MS/MS By MS/MS 1 1 1.2656 1.1618 1.1721 2 Median 1.2148 1.1522 NaN 1 0 Median 1.3185 1.1715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5379900 2374800 3005200 2455500 1118300 1337200 2924500 1256500 1668000 0 0 0 0 0 0 0 0 0 0 0 0 10353 1714 10778 51426;51427 51479;51480;51481;51482 51482 4 GAEYVSAR VQENCIDLVGRIADRGAEYVSAREWMRICF VGRIADRGAEYVSAREWMRICFELLELLKA R G A A R E 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 8 0 851.41373 O75533;H7C341 O75533 1046 1053 SF3B1 Splicing factor 3B subunit 1 yes no 2 0.010415 58.917 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1.109 1.0272 13.914 7 Median NaN NaN NaN 0 0 Median 1.367 1.18 NaN 1 0 Median 0.87444 0.88539 15.473 2 0 Median 1.2017 1.056 NaN 1 0 Median 1.0405 1.0937 8.8667 2 0 Median 1.109 0.91015 NaN 1 0 Median 4498500 1952600 2545900 0 0 0 1533800 536390 997450 767710 361080 406630 233900 110150 123750 1719000 816350 902670 244010 128600 115400 10354 1683 10779 51428;51429;51430;51431;51432;51433;51434 51483;51484;51485;51486 51485 4 GAFFMDEDEEVYKR AVKGKYKFLQKYYHRGAFFMDEDEEVYKRD RGAFFMDEDEEVYKRDFSAPTLEDHFNKTI R G A K R D 1 1 0 2 0 0 3 1 0 0 0 1 1 2 0 0 0 0 1 1 0 0 14 1 1734.7559 P55081 P55081 345 358 MFAP1 Microfibrillar-associated protein 1 yes yes 3 0.056403 17.8 By matching By MS/MS 1 2 0.94842 1.0492 18.369 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2255 1.3663 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93848 1.0035 6.2996 2 0 Median NaN NaN NaN 0 0 Median 10117000 4591800 5524700 0 0 0 0 0 0 2730900 1061000 1669900 0 0 0 7385600 3530800 3854800 0 0 0 10355 2495 10780 51435;51436;51437 51487 51487 0 GAFGEVQLVR QMKAEDYDVVKVIGRGAFGEVQLVRHKASQ KVIGRGAFGEVQLVRHKASQKVYAMKLLSK R G A V R H 1 1 0 0 0 1 1 2 0 0 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1074.5822 O75116;D6REE7;C9JFJ0;A0A0U1RQV4;Q13464 O75116 101 110 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 no no 2 0.00060064 95.909 By MS/MS By MS/MS By MS/MS 1 2 1 1.3744 1.2072 21.817 4 Median 1.1052 1.0374 NaN 1 0 Median 1.3954 1.2072 16.642 2 0 Median 1.5028 1.6529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24531000 9648000 14883000 10583000 4579800 6003000 7801000 3294600 4506400 6147300 1773600 4373700 0 0 0 0 0 0 0 0 0 10356 1644;305 10781 51438;51439;51440;51441 51488;51489;51490;51491;51492 51489 4 GAFGKPQGTVAR MLSCAGADRLQTGMRGAFGKPQGTVARVHI GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ R G A A R V 2 1 0 0 0 1 0 3 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 1 1187.6411 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5;Q96L21 F8W7C6 66 77 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2;3 0.00045198 91.867 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 4 1.0718 1.0953 28.518 7 Median 0.86665 0.86927 NaN 1 0 Median 1.2419 1.1232 17.274 2 0 Median 1.0533 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1387 1.2651 36.016 3 0 Median NaN NaN NaN 0 0 Median 55261000 13496000 41765000 10235000 97084 10138000 12200000 3242100 8957900 10052000 3251400 6800300 0 0 0 22775000 6905100 15869000 0 0 0 10357 1084 10782 51442;51443;51444;51445;51446;51447;51448;51449;51450;51451;51452 51493;51494;51495;51496;51497;51498;51499;51500 51496 8 GAFHRPVLGGFR KLQGQDSERVRAWQRGAFHRPVLGGFRESR WQRGAFHRPVLGGFRESRAAEDGFRKAQKP R G A F R E 1 2 0 0 0 0 0 3 1 0 1 0 0 2 1 0 0 0 0 1 0 0 12 1 1312.7153 A0A0C4DGG1;Q9UKS6;E9PIY1;E9PJ75;E9PNM9 A0A0C4DGG1 116 127 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2;3 2.3299E-06 93.843 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 1 1.1447 1.1033 17.546 8 Median 1.0511 1.0615 NaN 1 0 Median 1.3875 1.2512 NaN 1 0 Median 0.8787 0.95022 3.4196 2 0 Median 1.3146 1.2095 4.6892 3 1 Median 0.70227 0.76122 NaN 1 0 Median NaN NaN NaN 0 0 Median 77382000 36324000 41058000 7862700 4062700 3800000 3561100 1360000 2201000 21144000 10756000 10388000 31985000 12580000 19405000 12830000 7564800 5265200 0 0 0 10358 244 10783 51453;51454;51455;51456;51457;51458;51459;51460;51461 51501;51502;51503;51504;51505;51506;51507;51508;51509;51510;51511;51512 51512 12 GAFIDQSQSLNIHIAEPNYGK WEISQKTVLKMAAERGAFIDQSQSLNIHIA SQSLNIHIAEPNYGKLTSMHFYGWKQGLKT R G A G K L 2 0 2 1 0 2 1 2 1 3 1 1 0 1 1 2 0 0 1 0 0 0 21 0 2301.139 P23921;E9PL69 P23921 699 719 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 3 0.0073522 29.136 By MS/MS 1 1.2256 1.0924 NaN 1 Median 1.2256 1.0924 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22942000 11067000 11875000 22942000 11067000 11875000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10359 2121 10784 51462 51513 51513 1 GAFIQLLR PTLAFHASLTNPFGKGAFIQLLRQFGKLHT LTNPFGKGAFIQLLRQFGKLHTDKKQISVG K G A L R Q 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 916.54944 Q13823;H0YG10 Q13823 292 299 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.003118 101.33 By matching By matching By MS/MS By matching 2 2 4 1 0.95682 0.97026 12.494 9 Median NaN NaN NaN 0 0 Median 1.2164 1.0838 17.591 2 0 Median 0.84332 0.91797 7.8353 2 0 Median NaN NaN NaN 0 0 Median 0.94214 0.96669 2.2874 4 0 Median 1.4632 1.2695 NaN 1 0 Median 16416000 8045000 8370500 0 0 0 1787100 809050 978090 1663700 822980 840700 0 0 0 12463000 6203600 6259000 502110 209370 292740 10360 2839 10785 51463;51464;51465;51466;51467;51468;51469;51470;51471 51514;51515;51516;51517 51517 4 GAFSEEYKR KMVSADAYKITPGARGAFSEEYKRLDEDLA ITPGARGAFSEEYKRLDEDLAAYCRRRDIR R G A K R L 1 1 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 9 1 1085.5142 P09543;K7ERC4;K7EN66;C9K0L8;K7ERZ0 P09543 94 102 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2 0.018719 45.68 By MS/MS 1 1.1816 1.1018 NaN 1 Median NaN NaN NaN 0 0 Median 1.1816 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1026600 438020 588580 0 0 0 1026600 438020 588580 0 0 0 0 0 0 0 0 0 0 0 0 10361 1918 10786 51472 51518;51519 51518 2 GAFTDNER QTPLVFKGVVFNEMKGAFTDNERIFSQHLQ VVFNEMKGAFTDNERIFSQHLQNRLLPDHT K G A E R I 1 1 1 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 8 0 908.39881 Q5JRX3 Q5JRX3 208 215 PITRM1 Presequence protease, mitochondrial yes yes 2 0.042262 36.395 By matching By MS/MS 1 1 1.1958 1.1061 12.371 2 Median 1.0166 1.0135 NaN 1 0 Median 1.4067 1.2072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2158500 855690 1302800 240300 101120 139180 1918200 754560 1163600 0 0 0 0 0 0 0 0 0 0 0 0 10362 3050 10787 51473;51474 51520 51520 1 GAGAFGYFEVTHDITK HFDRERIPERVVHAKGAGAFGYFEVTHDIT AGAFGYFEVTHDITKYSKAKVFEHIGKKTP K G A T K Y 2 0 0 1 0 0 1 3 1 1 0 1 0 2 0 0 2 0 1 1 0 0 16 0 1711.8206 P04040 P04040 78 93 CAT Catalase yes yes 2;3 0.00019738 43.024 By MS/MS By matching 2 1 1.1522 1.0458 26.166 3 Median 1.2538 1.1949 35.369 2 1 Median 1.1522 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12960000 6037200 6922600 12687000 5901700 6785100 273040 135470 137570 0 0 0 0 0 0 0 0 0 0 0 0 10363 1841 10788 51475;51476;51477 51521;51522 51521 2 GAGALLQHGLVNFTFNK KRLSHVSGHRSYYLRGAGALLQHGLVNFTF GALLQHGLVNFTFNKLLRRGFTPMTVPDLL R G A N K L 2 0 2 0 0 1 0 3 1 0 3 1 0 2 0 0 1 0 0 1 0 0 17 0 1785.9526 M0QWZ7;M0R2C6;Q9NP81;M0R259 M0QWZ7 233 249 SARS2 Serine--tRNA ligase, mitochondrial yes no 2 5.7917E-07 87.363 By MS/MS 1 1.1435 0.98389 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1435 0.98389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1576400 647100 929330 0 0 0 0 0 0 0 0 0 1576400 647100 929330 0 0 0 0 0 0 10364 1407 10789 51478 51523;51524 51524 2 GAGGQGQLDVR KVAVGQEQAFSVNTRGAGGQGQLDVRMTSP VNTRGAGGQGQLDVRMTSPSRRPIPCKLEP R G A V R M 1 1 0 1 0 2 0 4 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1056.5312 Q14315 Q14315 992 1002 FLNC Filamin-C yes yes 2 0.00012997 141.48 By MS/MS By MS/MS By matching 1 3 1 1.0328 1.0355 27.317 5 Median 1.0328 1.0368 NaN 1 0 Median 0.96272 0.80733 23.441 3 0 Median 1.1895 1.3257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16876000 9049600 7826600 1741000 918030 822970 14350000 7790600 6559800 784760 340910 443850 0 0 0 0 0 0 0 0 0 10365 2871 10790 51479;51480;51481;51482;51483 51525;51526;51527;51528;51529;51530;51531;51532 51527 8 GAGGSPVGVEEGLVNVGTGQK NPLSPSLSDKDRGLKGAGGSPVGVEEGLVN VGVEEGLVNVGTGQKLPTSGADPLCRNPTN K G A Q K L 1 0 1 0 0 1 2 7 0 0 1 1 0 0 1 1 1 0 0 4 0 0 21 0 1910.9698 A0A1W2PQJ7;Q7Z5J4 A0A1W2PQJ7 1323 1343 RAI1 Retinoic acid-induced protein 1 yes no 2 0.00801 36.77 By MS/MS 1 0.67567 0.71456 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67567 0.71456 NaN 1 1 Median NaN NaN NaN 0 0 Median 2308900 1327600 981290 0 0 0 0 0 0 0 0 0 0 0 0 2308900 1327600 981290 0 0 0 10366 344 10791 51484 51533 51533 1 GAGGTIITNFER YKNGWIVMIAIGWARGAGGTIITNFERLVK WARGAGGTIITNFERLVKGDWKPEGDEWLK R G A E R L 1 1 1 0 0 0 1 3 0 2 0 0 0 1 0 0 2 0 0 0 0 0 12 0 1234.6306 A0A0A0MRS4;Q9NVV0;H7C3B3;H7C4C1 A0A0A0MRS4 98 109 TMEM38B Trimeric intracellular cation channel type B yes no 2 0.002872 73.067 By MS/MS 1 0.18377 0.14697 NaN 1 Median NaN NaN NaN 0 0 Median 0.18377 0.14697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27402000 22775000 4626600 0 0 0 27402000 22775000 4626600 0 0 0 0 0 0 0 0 0 0 0 0 10367 170 10792 51485 51534 51534 1 GAGHMVPTDKPLAAFTMFSR GFVKEFSHIAFLTIKGAGHMVPTDKPLAAF VPTDKPLAAFTMFSRFLNKQPY________ K G A S R F 3 1 0 1 0 0 0 2 1 0 1 1 2 2 2 1 2 0 0 1 0 0 20 1 2133.05 X6R8A1;X6R5C5;P10619 X6R8A1 472 491 CTSA Carboxypeptidase;Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 3 0.0057645 30.767 By MS/MS By MS/MS 2 1 0.80581 0.79953 11.859 3 Median 0.79014 0.78397 2.779 2 2 Median 1.0885 0.96 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8471100 4975400 3495700 7818400 4676700 3141700 652640 298650 353990 0 0 0 0 0 0 0 0 0 0 0 0 10368 1944 10793 51486;51487;51488 51535;51536;51537 51537 3 GAGHTNMPNLLNTMMELR YYRAILEKNFSFLSKGAGHTNMPNLLNTMM HTNMPNLLNTMMELRKCCNHPYLINGAEEK K G A L R K 1 1 3 0 0 0 1 2 1 0 3 0 3 0 1 0 2 0 0 0 0 0 18 0 1998.9438 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;H0YJG4 Q9HCK8 1075 1092 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 3 0.056817 9.0466 By MS/MS 1 0.90594 1.0099 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90594 1.0099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 761570 417170 344400 0 0 0 0 0 0 761570 417170 344400 0 0 0 0 0 0 0 0 0 10369 4030 10794 51489 51538 51538 1 GAGIGGLGITVEGPSESK EAFTNKPNVFTVVTRGAGIGGLGITVEGPS IGGLGITVEGPSESKINCRDNKDGSCSAEY R G A S K I 1 0 0 0 0 0 2 6 0 2 1 1 0 0 1 2 1 0 0 1 0 0 18 0 1627.8417 O75369;E7EN95 O75369 1355 1372 FLNB Filamin-B yes no 2 7.193E-11 98.942 By MS/MS By MS/MS By MS/MS 2 3 1 1.2032 1.1218 8.2107 4 Median 1.1615 1.112 NaN 1 0 Median 1.2464 1.1318 9.9837 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82251000 38487000 43764000 39222000 18463000 20759000 43029000 20024000 23005000 0 0 0 0 0 0 0 0 0 0 0 0 10370 1664 10795 51490;51491;51492;51493;51494;51495 51539;51540;51541;51542;51543;51544;51545 51541 7 GAGNGVVPAGVILER QPLVKERDNDTKVKRGAGNGVVPAGVILER GAGNGVVPAGVILERSQPPGEDSDTDVDDD R G A E R S 2 1 1 0 0 0 1 4 0 1 1 0 0 0 1 0 0 0 0 3 0 0 15 0 1407.7834 Q14676 Q14676 277 291 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.00032446 51.841 By MS/MS By matching 2 2 0.89641 0.87902 36.341 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90703 1.0047 24.81 2 0 Median 0.77898 0.67861 42.501 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8758400 4709000 4049400 0 0 0 0 0 0 8061700 4353700 3708100 696630 355290 341340 0 0 0 0 0 0 10371 2887 10796 51496;51497;51498;51499 51546 51546 1 GAGNTSSLNPLAVGFVQTPPVISSAHIQDER ELSFLDAHKNFAQNRGAGNTSSLNPLAVGF QTPPVISSAHIQDERVLEQAEGKVEEPENP R G A E R V 3 1 2 1 0 2 1 3 1 2 2 0 0 1 3 4 2 0 0 3 0 0 31 0 3161.6105 Q9P2D1 Q9P2D1 2136 2166 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.0090649 18.965 By MS/MS 1 0.57455 0.63856 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57455 0.63856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2693200 1593500 1099600 0 0 0 0 0 0 2693200 1593500 1099600 0 0 0 0 0 0 0 0 0 10372 4220 10797 51500 51547 51547 1 GAGSGELKVTVK GVRVKETADFKVYTKGAGSGELKVTVKGPK YTKGAGSGELKVTVKGPKGEERVKQKDLGD K G A V K G 1 0 0 0 0 0 1 3 0 0 1 2 0 0 0 1 1 0 0 2 0 0 12 1 1144.6452 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315 P21333 509 520 FLNA;FLNC Filamin-A;Filamin-C no no 2 0.0022464 77.662 By MS/MS 2 1.1427 1.1834 15.061 2 Median 1.1427 1.1834 15.061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10412000 4711200 5701200 10412000 4711200 5701200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10373 2088;3120;2871 10798 51501;51502 51548;51549;51550 51549 3 GAGSIAGASASPK KSVEEVASEIQPFLRGAGSIAGASASPKEK LRGAGSIAGASASPKEKYSLVEAKRKKLIS R G A P K E 4 0 0 0 0 0 0 3 0 1 0 1 0 0 1 3 0 0 0 0 0 0 13 0 1072.5513 P15924 P15924 2014 2026 DSP Desmoplakin yes yes 2 0.0046315 39.937 By matching By matching By matching By MS/MS 1 2 1 2 0.91474 0.92526 11.378 6 Median 0.9876 0.9735 NaN 1 0 Median 0.84014 0.76185 1.6595 2 0 Median 0.8179 0.90536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1227 0.95036 0.71027 2 0 Median 3965200 2020600 1944600 843160 397670 445490 870940 503150 367790 625500 304730 320770 0 0 0 0 0 0 1625600 815090 810510 10374 2021 10799 51503;51504;51505;51506;51507;51508 51551;51552 51552 2 GAGTDDHTLIR SIPAYLAETLYYAMKGAGTDDHTLIRVMVS YAMKGAGTDDHTLIRVMVSRSEIDLFNIRK K G A I R V 1 1 0 2 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 0 0 0 11 0 1154.568 P08758;D6RBL5;D6RBE9 P08758 261 271 ANXA5 Annexin A5;Annexin yes no 2 2.1186E-07 168.8 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1464 0.98829 12.457 4 Median 1.0692 1.001 NaN 1 0 Median 1.1732 0.97576 NaN 1 0 Median 1.2672 1.2375 NaN 1 0 Median 1.1202 0.93607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26945000 12679000 14266000 15199000 7277000 7921600 8101500 3653700 4447800 2154000 1095500 1058500 1490900 653270 837660 0 0 0 0 0 0 10375 1909 10800 51509;51510;51511;51512 51553;51554;51555;51556;51557;51558;51559;51560 51557 8 GAGTDDSTLVR NRPAFFAERLYYAMKGAGTDDSTLVRIVVT YAMKGAGTDDSTLVRIVVTRSEIDLVQIKQ K G A V R I 1 1 0 2 0 0 0 2 0 0 1 0 0 0 0 1 2 0 0 1 0 0 11 0 1090.5255 P20073 P20073 431 441 ANXA7 Annexin A7 yes yes 2 0.00014501 84.213 By MS/MS By matching By matching By matching By MS/MS 3 1 1 1 1 1.2176 1.0789 50.942 7 Median 0.91518 0.89067 31.375 3 0 Median 1.2521 1.0704 NaN 1 0 Median 1.2176 1.2031 NaN 1 0 Median 1.2362 1.0789 NaN 1 0 Median 3.2044 3.2312 NaN 1 1 Median NaN NaN NaN 0 0 Median 15030000 6814100 8215800 7485100 3897800 3587300 3109000 1417900 1691200 1072800 453310 619490 683380 324180 359190 2679600 720950 1958700 0 0 0 10376 2073 10801 51513;51514;51515;51516;51517;51518;51519 51561;51562 51561 2 GAGTDEGCLIEILASR PTVLYDVQELRRAMKGAGTDEGCLIEILAS AGTDEGCLIEILASRTPEEIRRISQTYQQQ K G A S R T 2 1 0 1 1 0 2 3 0 2 2 0 0 0 0 1 1 0 0 0 0 0 16 0 1660.809 P09525 P09525 101 116 ANXA4 Annexin A4 yes yes 2 0.0001317 64.55 By MS/MS 1 1.2135 1.02 NaN 1 Median NaN NaN NaN 0 0 Median 1.2135 1.02 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2244000 990930 1253000 0 0 0 2244000 990930 1253000 0 0 0 0 0 0 0 0 0 0 0 0 10377 1917 10802 51520 51563 51563 1 GAGTGGLGLAIEGPSEAK GGLVNKANRFTVETRGAGTGGLGLAIEGPS TGGLGLAIEGPSEAKMSCKDNKDGSCTVEY R G A A K M 3 0 0 0 0 0 2 6 0 1 2 1 0 0 1 1 1 0 0 0 0 0 18 0 1583.8155 Q14315 Q14315 1377 1394 FLNC Filamin-C yes yes 2 4.7673E-11 102.73 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1 0.93083 0.86917 20.874 10 Median 0.89925 0.88294 0.027655 2 0 Median 0.892 0.7937 7.184 2 0 Median 1.1399 1.2453 23.648 2 1 Median 0.87994 0.82333 5.4671 2 0 Median 1.1345 1.1939 NaN 1 0 Median 0.97706 0.84001 NaN 1 0 Median 132700000 68251000 64447000 68393000 34791000 33602000 43366000 23365000 20001000 13845000 6211100 7634400 3063500 1551600 1511900 3340200 1998100 1342100 690330 334890 355440 10378 2871 10803 51521;51522;51523;51524;51525;51526;51527;51528;51529;51530 51564;51565;51566;51567;51568;51569;51570;51571;51572;51573;51574;51575;51576;51577;51578 51565 15 GAGTGGLGLAVEGPSEAK SGTTNKPNKFTVETRGAGTGGLGLAVEGPS TGGLGLAVEGPSEAKMSCMDNKDGSCSVEY R G A A K M 3 0 0 0 0 0 2 6 0 0 2 1 0 0 1 1 1 0 0 1 0 0 18 0 1569.7999 P21333;Q60FE5;A0A087WWY3 P21333 1382 1399 FLNA Filamin-A no no 2 2.1003E-14 142.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 1 0.86096 0.81249 18.669 11 Median 0.96133 0.93737 2.427 2 0 Median 0.85731 0.773 12.02 3 0 Plateau 0.82527 0.89403 13.524 2 0 Median 0.83077 0.78505 13.294 2 0 Median 1.1743 1.2301 NaN 1 0 Median 0.86096 0.73771 NaN 1 0 Median 700860000 360660000 340200000 292080000 147010000 145070000 297580000 157630000 139950000 71539000 37044000 34495000 16803000 8568000 8235300 20242000 9101500 11141000 2614100 1303900 1310200 10379 2088;3120 10804 51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541 51579;51580;51581;51582;51583;51584;51585;51586;51587;51588;51589;51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610;51611;51612 51586 34 GAGTGGLGLTVEGPCEAK GGLVGKPAEFTIDTKGAGTGGLGLTVEGPC TGGLGLTVEGPCEAKIECSDNGDGTCSVSY K G A A K I 2 0 0 0 1 0 2 6 0 0 2 1 0 0 1 0 2 0 0 1 0 0 18 0 1672.809 Q14315;O75369;E7EN95 O75369 1067 1084 FLNC;FLNB Filamin-C;Filamin-B no no 2 5.3689E-06 62.042 By MS/MS 2 0.93867 0.83559 2.5357 2 Median NaN NaN NaN 0 0 Median 0.93867 0.83559 2.5357 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31601000 15670000 15930000 0 0 0 31601000 15670000 15930000 0 0 0 0 0 0 0 0 0 0 0 0 10380 1664;2871 10805 51542;51543 51613;51614;51615;51616;51617 51615 5 GAGTLAAQALR ______________________________ RLLRGAGTLAAQALRARGPSGAAAMRSMAS R G A L R A 4 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1027.5774 P10606 P10606 8 18 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2 0.028804 31.934 By MS/MS 1 1.3449 1.0634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3449 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 646540 285000 361540 0 0 0 0 0 0 0 0 0 646540 285000 361540 0 0 0 0 0 0 10381 1943 10806 51544 51618 51618 1 GAGTVFDAFPDQVAIQLNDTHPALAIPELMR DIIRRFKASKFGSTRGAGTVFDAFPDQVAI LNDTHPALAIPELMRIFVDIEKLPWSKAWE R G A M R I 5 1 1 3 0 2 1 2 1 2 3 0 1 2 3 0 2 0 0 2 0 0 31 0 3306.6707 P06737;E9PK47 P06737 322 352 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 3 8.1528E-30 76.51 By MS/MS 1 0.73559 0.6518 NaN 1 Median NaN NaN NaN 0 0 Median 0.73559 0.6518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1203000 653500 549510 0 0 0 1203000 653500 549510 0 0 0 0 0 0 0 0 0 0 0 0 10382 1874 10807 51545 51619;51620 51620 2 GAGWLFGAK WSDPEDVDTWAISPRGAGWLFGAKVTNEFV WAISPRGAGWLFGAKVTNEFVHINNLKLIC R G A A K V 2 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 0 1 0 0 0 0 9 0 905.47594 O00743 O00743 211 219 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes yes 2 0.004416 60.76 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1.2982 1.1117 28.993 7 Median 0.98509 0.91178 10.282 2 0 Median 1.2999 1.1039 0.99719 2 0 Median 2.1745 2.1183 NaN 1 0 Median 1.482 1.2394 NaN 1 0 Median 1.2982 1.2889 NaN 1 0 Median NaN NaN NaN 0 0 Median 23354000 9954100 13399000 18045000 7844000 10201000 3454700 1437100 2017600 1216000 343130 872890 120160 46313 73846 517970 283530 234440 0 0 0 10383 1476 10808 51546;51547;51548;51549;51550;51551;51552 51621;51622;51623 51622 3 GAGWTGHVAGTR SGIASAAAAAVEAARGAGWTGHVAGTRKTT AARGAGWTGHVAGTRKTTPGFRLVEKYGLL R G A T R K 2 1 0 0 0 0 0 4 1 0 0 0 0 0 0 0 2 1 0 1 0 0 12 0 1168.5738 Q15274;C9JCJ5 Q15274 127 138 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes no 2 0.020655 32.523 By MS/MS 1 0.87853 0.85051 NaN 1 Median 0.87853 0.85051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2104400 1180400 924090 2104400 1180400 924090 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10384 2936 10809 51553 51624;51625 51625 2 GAGYTFGQDISETFNHANGLTLVSR WSDPDDRGGWGISPRGAGYTFGQDISETFN SETFNHANGLTLVSRAHQLVMEGYNWCHDR R G A S R A 2 1 2 1 0 1 1 4 1 1 2 0 0 2 0 2 3 0 1 1 0 0 25 0 2654.2725 P67775;P62714;H0YC23 P67775 215 239 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 3 0.0059502 23.913 By MS/MS By MS/MS By MS/MS 1 1 1 0.94199 0.90323 6.7379 3 Median 0.85581 0.81962 NaN 1 0 Median 1.0861 0.90323 NaN 1 0 Median 0.94199 0.93289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21316000 10597000 10719000 3323900 1682900 1641000 12344000 5717100 6626500 5648700 3197400 2451300 0 0 0 0 0 0 0 0 0 10385 2594 10810 51554;51555;51556 51626;51627;51628;51629 51627 4 GAHGIIVVYDVTDQESFNNVK AGQERFRTITSSYYRGAHGIIVVYDVTDQE VVYDVTDQESFNNVKQWLQEIDRYASENVN R G A V K Q 1 0 2 2 0 1 1 2 1 2 0 1 0 1 0 1 1 0 1 4 0 0 21 0 2304.1386 E7END7;P62820 E7END7 51 71 RAB1A Ras-related protein Rab-1A yes no 3 2.3061E-12 78.021 By MS/MS By MS/MS 1 1 1.1467 1.0212 0.59884 2 Median 1.1003 1.0255 NaN 1 0 Median 1.1951 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10622000 4403300 6218300 9045200 3804100 5241100 1576400 599230 977180 0 0 0 0 0 0 0 0 0 0 0 0 10386 863 10811 51557;51558 51630;51631;51632 51631 3 GAHGIIVVYDVTDQESYANVK AGQERFRTITSSYYRGAHGIIVVYDVTDQE VVYDVTDQESYANVKQWLQEIDRYASENVN R G A V K Q 2 0 1 2 0 1 1 2 1 2 0 1 0 0 0 1 1 0 2 4 0 0 21 0 2277.1277 Q9H0U4 Q9H0U4 80 100 RAB1B Ras-related protein Rab-1B yes yes 3 1.5659E-18 87.85 By MS/MS By MS/MS By MS/MS 1 1 1 1.3415 1.1291 24.587 3 Median 1.1569 1.0738 NaN 1 1 Median 1.3415 1.1291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4668 1.6819 NaN 1 0 Median NaN NaN NaN 0 0 Median 26494000 12970000 13524000 20425000 10362000 10063000 4100200 1676600 2423600 0 0 0 0 0 0 1968700 931870 1036900 0 0 0 10387 3929 10812 51559;51560;51561 51633;51634;51635 51633 3 GAHSVGLMWWMLAR SPLRYVDIAIPCNNKGAHSVGLMWWMLARE KGAHSVGLMWWMLAREVLRMRGTISREHPW K G A A R E 2 1 0 0 0 0 0 2 1 0 2 0 2 0 0 1 0 2 0 1 0 0 14 0 1613.7959 C9J9K3;A0A0C4DG17;P08865 C9J9K3 167 180 RPSA 40S ribosomal protein SA yes no 2;3 0.00015793 79.974 By MS/MS By MS/MS By matching By matching By matching 2 4 1 1 1 1.175 1.1447 7.0465 9 Median 1.1632 1.1584 1.4081 2 0 Median 1.2162 1.0345 7.6429 4 0 Median 1.1366 1.0959 NaN 1 0 Median 1.3879 1.1823 NaN 1 0 Median 1.1239 1.1447 NaN 1 0 Median NaN NaN NaN 0 0 Median 20241000 9086200 11155000 7028800 3075900 3952800 12205000 5545500 6659800 718260 349720 368550 74553 31540 43013 214470 83561 130910 0 0 0 10388 232 10813 51562;51563;51564;51565;51566;51567;51568;51569;51570 51636;51637;51638;51639;51640 51638 5 GAHTTMADALWR KEQESRLPSHWLKSKGAHTTMADALWRLRD KSKGAHTTMADALWRLRDLMLRDTLNIRQA K G A W R L 3 1 0 1 0 0 0 1 1 0 1 0 1 0 0 0 2 1 0 0 0 0 12 0 1328.6296 Q86U86 Q86U86 1657 1668 PBRM1 Protein polybromo-1 yes yes 3 9.7612E-05 80.979 By MS/MS By matching By matching 1 1 1 0.52583 0.99276 40.663 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90198 0.99276 NaN 1 0 Median 0.52583 0.46312 NaN 1 0 Median 0.47608 0.53076 NaN 1 0 Median NaN NaN NaN 0 0 Median 7989600 4389000 3600600 0 0 0 0 0 0 5532600 2769000 2763500 1133100 721130 411980 1323900 898810 425060 0 0 0 10389 3273 10814 51571;51572;51573 51641;51642 51641 2 GAIDHYVTPVK PITRKSVGHRMGGGKGAIDHYVTPVKAGRL GGGKGAIDHYVTPVKAGRLVVEMGGRCEFE K G A V K A 1 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 2 0 0 11 0 1198.6346 Q9NX20;E9PI14 Q9NX20 145 155 MRPL16 39S ribosomal protein L16, mitochondrial yes no 2;3 0.00060556 66.27 By MS/MS By MS/MS By MS/MS 1 2 1 1.242 1.1224 31.836 4 Median 0.91449 0.85174 NaN 1 0 Median 1.7517 1.492 25.101 2 0 Median 1.0495 1.0083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9783400 4697500 5085900 4541300 2321700 2219600 2937900 1295600 1642300 2304100 1080100 1224000 0 0 0 0 0 0 0 0 0 10390 4155 10815 51574;51575;51576;51577 51643;51644;51645;51646 51646 4 GAIEVLIR EALDEETKRRDQMIKGAIEVLIREYSSELN RRDQMIKGAIEVLIREYSSELNAPSQESDS K G A I R E 1 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 869.53345 P49756;E9PQU5 P49756 209 216 RBM25 RNA-binding protein 25 yes no 2 0.0024657 108.24 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1 2 1.1842 1.1739 32.729 11 Median 1.4639 1.4208 NaN 1 0 Median 1.8008 1.5791 NaN 1 0 Median 1.0679 1.1739 4.0119 3 0 Median 1.2217 1.0295 9.0728 3 0 Median 1.1694 1.228 NaN 1 0 Median 0.82613 0.70864 67.06 2 0 Median 52143000 23614000 28528000 1430900 615000 815940 1071100 441120 630010 37969000 17378000 20592000 4543500 2021500 2522000 4385100 1943200 2441900 2743000 1216100 1526900 10391 2397 10816 51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588 51647;51648;51649;51650;51651;51652;51653;51654 51648 8 GAILLSVAR SVALEKYQEACENGRGAILLSVARGKVSEG ACENGRGAILLSVARGKVSEGIDFVHHYGR R G A A R G 2 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 898.56 P18074;E7EVE9;A8MX75 P18074 593 601 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.0031588 67.032 By MS/MS By matching 1 1 1.3851 1.2917 21.084 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0672 1.1128 NaN 1 0 Median 1.7978 1.4993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5769000 2913000 2856100 0 0 0 0 0 0 5558500 2836000 2722500 210520 76973 133540 0 0 0 0 0 0 10392 2053 10817 51589;51590 51655 51655 1 GAILSEEELAAMSPTAAAVAK ELENANDLLSATKRKGAILSEEELAAMSPT EELAAMSPTAAAVAKIVKPGMKLTELYNAY K G A A K I 7 0 0 0 0 0 3 1 0 1 2 1 1 0 1 2 1 0 0 1 0 0 21 0 2029.0402 P12270 P12270 367 387 TPR Nucleoprotein TPR yes yes 2;3 9.3252E-05 41.092 By MS/MS By matching By MS/MS 3 1 3 0.77423 0.84815 13.948 6 Median 1.0509 1.0424 18.978 3 0 Median NaN NaN NaN 0 0 Median 0.75828 0.82927 4.4469 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14352000 7387800 6963900 7873500 3997000 3876600 499460 123890 375570 5978700 3267000 2711700 0 0 0 0 0 0 0 0 0 10393 1978 10818 51591;51592;51593;51594;51595;51596;51597 51656;51657;51658;51659;51660;51661 51657 6 GAINMGDAFSPAPAGNQGPPPMMGMNMNNR ENREQEMRMGDMGPRGAINMGDAFSPAPAG NQGPPPMMGMNMNNRATIPGPPMGPGPAMG R G A N R A 4 1 5 1 0 1 0 5 0 1 0 0 5 1 5 1 0 0 0 0 0 0 30 0 3044.3184 Q8WXF1 Q8WXF1 400 429 PSPC1 Paraspeckle component 1 yes yes 3 0.012965 16.106 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 0.52495 0.43993 19.088 5 Median 0.5472 0.55408 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34828 0.35551 NaN 1 1 Median 0.52495 0.43993 NaN 1 0 Median 0.46263 0.47592 20.216 2 1 Median NaN NaN NaN 0 0 Median 34535000 28676000 5859600 1775100 1173200 601880 0 0 0 30466000 25868000 4597100 799900 509970 289940 1494900 1124200 370730 0 0 0 10394 3520 10819 51598;51599;51600;51601;51602;51603 51662;51663;51664;51665 51662 4 GAIQFVTQYQHSSGQR EVVNQHNAPIPQGGRGAIQFVTQYQHSSGQ AIQFVTQYQHSSGQRRIRVTTIARNWADAQ R G A Q R R 1 1 0 0 0 4 0 2 1 1 0 0 0 1 0 2 1 0 1 1 0 0 16 0 1805.8809 F5H365;Q15436 F5H365 448 463 SEC23A Protein transport protein Sec23A yes no 2;3 3.5439E-10 147.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.2657 1.1483 18.17 7 Median 0.95946 0.90885 12.197 2 0 Median 1.3492 1.1773 3.528 2 0 Median 1.0238 1.0536 32.372 2 1 Median 1.3439 1.158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68939000 35673000 33265000 33680000 17632000 16047000 6529000 3051600 3477500 26492000 14094000 12398000 2027900 838500 1189400 0 0 0 210020 56460 153560 10395 1029 10820 51604;51605;51606;51607;51608;51609;51610;51611 51666;51667;51668;51669;51670;51671;51672;51673 51667 8 GAIREYQTQLIQR IFSRFNALFVRPHIRGAIREYQTQLIQRVK IRGAIREYQTQLIQRVKDDIESLHDKFKVQ R G A Q R V 1 2 0 0 0 3 1 1 0 2 1 0 0 0 0 0 1 0 1 0 0 0 13 1 1574.8529 Q14204 Q14204 599 611 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0001532 72.496 By MS/MS By MS/MS 1 1 1.0495 1.147 11.539 2 Median 1.1452 1.2445 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96187 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10944000 4913000 6031200 6950900 3024500 3926400 0 0 0 3993300 1888500 2104800 0 0 0 0 0 0 0 0 0 10396 2865 10821 51612;51613 51674;51675;51676 51675 3 GAIVHYTILNNHVYR QQMLKEVPKRFGDERGAIVHYTILNNHVYR GAIVHYTILNNHVYRRSLGKYTDFKMFSDE R G A Y R R 1 1 2 0 0 0 0 1 2 2 1 0 0 0 0 0 1 0 2 2 0 0 15 0 1768.9373 Q7Z4H8 Q7Z4H8 191 205 KDELC2 KDEL motif-containing protein 2 yes yes 3;4 4.4512E-07 82.202 By MS/MS 2 0.92348 0.8786 27.283 2 Median 0.92348 0.8786 27.283 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37181000 18418000 18763000 37181000 18418000 18763000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10397 3246 10822 51614;51615 51677;51678 51678 2 GAKAEEILEK GIRRNEKIAVHCTVRGAKAEEILEKGLKVR HCTVRGAKAEEILEKGLKVREYELRKNNFS R G A E K G 2 0 0 0 0 0 3 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1086.5921 P62913;Q5VVC8 P62913 76 85 RPL11 60S ribosomal protein L11 yes no 2 0.0020348 121.6 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.1999 1.2095 6.093 7 Median 1.1293 1.1471 8.172 2 0 Median 1.2234 1.0994 1.201 2 0 Median 1.1999 1.2095 NaN 1 0 Median 1.3682 1.2318 NaN 1 0 Median 1.0772 1.2385 NaN 1 0 Median NaN NaN NaN 0 0 Median 35577000 16352000 19225000 19799000 9351400 10448000 9753800 4230200 5523700 2279600 1106200 1173400 3028600 1317000 1711600 716180 347680 368500 0 0 0 10398 2609 10823 51616;51617;51618;51619;51620;51621;51622 51679;51680;51681;51682;51683 51681 5 GAKPVVVLQK KDKVEKIGLVEDLNKGAKPVVVLQKLSLDD EDLNKGAKPVVVLQKLSLDDVQKLIKDRED K G A Q K L 1 0 0 0 0 1 0 1 0 0 1 2 0 0 1 0 0 0 0 3 0 0 10 1 1037.6597 A0A590UJS4;Q6KC79 A0A590UJS4 998 1007 NIPBL Nipped-B-like protein yes no 2 0.021565 52.786 By matching By MS/MS By matching 1 1 1 0.80267 0.84253 2.0956 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74122 0.84253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80267 0.85924 NaN 1 0 Median 0.92338 0.824 NaN 1 0 Median 7220300 3692300 3528000 0 0 0 0 0 0 1135300 744030 391280 0 0 0 4139900 1901300 2238500 1945100 1046900 898160 10399 488 10824 51623;51624;51625 51684;51685 51684 2 GALALAQAVQR AFDAVKCTHWAEGGKGALALAQAVQRAAQA EGGKGALALAQAVQRAAQAPSSFQLLYDLK K G A Q R A 4 1 0 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1096.6353 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 794 804 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 9.728E-05 149.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1 1 1.1801 1.023 23.899 11 Median 1.0564 1.0129 23.933 3 0 Plateau 1.2343 1.023 2.419 3 1 Plateau 0.89291 0.9427 30.445 2 0 Median 1.241 1.0531 NaN 1 0 Median 1.5483 1.6096 NaN 1 0 Median 1.2689 1.0318 NaN 1 0 Median 280800000 129110000 151680000 157480000 73168000 84314000 71420000 31776000 39644000 37705000 18107000 19597000 6206000 2807000 3399000 5734000 2249900 3484100 2249800 1005400 1244400 10400 1968 10825 51626;51627;51628;51629;51630;51631;51632;51633;51634;51635;51636;51637 51686;51687;51688;51689;51690;51691;51692;51693;51694;51695;51696;51697;51698;51699;51700 51687 15 GALALEEK ERDELADEIANSSGKGALALEEKRRLEARI IANSSGKGALALEEKRRLEARIAQLEEELE K G A E K R 2 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 829.45453 P35579 P35579 1717 1724 MYH9 Myosin-9 yes no 2 0.00013038 107.32 By MS/MS By MS/MS 1 3 1.0858 0.95153 0.059964 2 Median NaN NaN NaN 0 0 Median 1.0858 0.95153 0.059964 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29088000 13485000 15603000 0 0 0 29088000 13485000 15603000 0 0 0 0 0 0 0 0 0 0 0 0 10401 2244 10826 51638;51639;51640;51641 51701;51702;51703;51704 51702 4 GALALEEKR ERDELADEIANSSGKGALALEEKRRLEARI ANSSGKGALALEEKRRLEARIAQLEEELEE K G A K R R 2 1 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 985.55564 P35579 P35579 1717 1725 MYH9 Myosin-9 yes yes 2 0.0016528 84.568 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0393 1.0335 16.176 4 Median 1.1544 1.1643 NaN 1 0 Median 0.97266 0.91742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0786 1.2207 NaN 1 0 Median 1.0016 0.88968 NaN 1 0 Median 17508000 8180600 9327200 5780800 2598400 3182300 6398500 3001700 3396800 0 0 0 0 0 0 3210000 1583400 1626600 2118600 997070 1121500 10402 2244 10827 51642;51643;51644;51645 51705;51706;51707;51708;51709;51710;51711 51707 7 GALDMLTK SQRAVTNHSVYCSTKGALDMLTKVMALELG SVYCSTKGALDMLTKVMALELGPHKIRVNA K G A T K V 1 0 0 1 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 8 0 847.44734 J3KS22;Q7Z4W1;J3QS36;J3KRZ4;J3QS45;J3KSZ5;J3QL34 J3KS22 152 159 DCXR L-xylulose reductase yes no 2 0.004801 79.469 By MS/MS 1 1.0919 1.0161 NaN 1 Median 1.0919 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16652000 7960500 8691500 16652000 7960500 8691500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10403 1330 10828 51646 51712;51713 51713 2 GALEGLPRPPPPVK NLIAEVGAAAALGVRGALEGLPRPPPPVKV RGALEGLPRPPPPVKVVVLGTPAEEDGGGK R G A V K V 1 1 0 0 0 0 1 2 0 0 2 1 0 0 5 0 0 0 0 1 0 0 14 1 1426.8296 Q8IYS1 Q8IYS1 142 155 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 2;3 0.0055219 53.683 By matching By MS/MS By matching 1 2 1 0.29298 0.29583 45.031 4 Median 0.38923 0.39189 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.31556 0.31943 50.619 2 1 Median 0.18517 0.17718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21443000 16505000 4938500 2351000 1726800 624180 0 0 0 9797200 7524100 2273100 9295000 7253800 2041300 0 0 0 0 0 0 10404 3345 10829 51647;51648;51649;51650 51714;51715 51714 2 GALEGSSCPFR GDMRKCPFYAAEQDKGALEGSSCPFRTAMA EQDKGALEGSSCPFRTAMAVLRKPSLQFIL K G A F R T 1 1 0 0 1 0 1 2 0 0 1 0 0 1 1 2 0 0 0 0 0 0 11 0 1179.5343 P30519;A0A087WT44 P30519 275 285 HMOX2 Heme oxygenase 2 yes no 2 0.019478 56.258 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10405 2194 10830 51651 51716 51716 1 GALFGANANR SRLDLIAQQMMPEVRGALFGANANRKFLD_ MPEVRGALFGANANRKFLD___________ R G A N R K 3 1 2 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 0 989.50428 P36543 P36543 213 222 ATP6V1E1 V-type proton ATPase subunit E 1 yes yes 2 0.001468 65.252 By MS/MS By matching 1 1 0.83208 0.79725 5.5061 2 Median 0.88176 0.8289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7852 0.76681 NaN 1 0 Median NaN NaN NaN 0 0 Median 7209100 4128000 3081100 5952900 3456700 2496200 0 0 0 0 0 0 0 0 0 1256200 671380 584840 0 0 0 10406 2258 10831 51652;51653 51717 51717 1 GALFGANANRK SRLDLIAQQMMPEVRGALFGANANRKFLD_ PEVRGALFGANANRKFLD____________ R G A R K F 3 1 2 0 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 11 1 1117.5992 P36543 P36543 213 223 ATP6V1E1 V-type proton ATPase subunit E 1 yes yes 2 0.027595 35.295 By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 1 1.1722 1.0571 39.105 8 Median 1.0741 1.0377 2.0812 2 0 Median 1.224 1.0611 23.994 3 0 Median 1.4606 1.5077 NaN 1 0 Median 0.98402 0.92863 NaN 1 0 Median 3.0667 3.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 15581000 7022600 8558300 6772100 3393100 3379000 6441200 2846900 3594300 305080 107580 197510 619830 296520 323310 1442600 378480 1064100 0 0 0 10407 2258 10832 51654;51655;51656;51657;51658;51659;51660;51661 51718;51719;51720 51720 3 GALHTVSHEDIR PPSSPRALRLDRLHKGALHTVSHEDIRDIR LHKGALHTVSHEDIRDIRNSTGSQDGPVSN K G A I R D 1 1 0 1 0 0 1 1 2 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1333.6739 A0A2R8Y7R9;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 749 760 PPFIA1 Liprin-alpha-1 yes no 2;3 0.00013212 89.247 By MS/MS 2 1.0068 0.85333 18.409 2 Median NaN NaN NaN 0 0 Median 1.0068 0.85333 18.409 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9297500 4210800 5086700 0 0 0 9297500 4210800 5086700 0 0 0 0 0 0 0 0 0 0 0 0 10408 382 10833 51662;51663 51721;51722;51723 51721 3 GALINVPPPFLGLPR GQRHGLEAISIMDSRGALINVPPPFLGLPR GALINVPPPFLGLPRFEARKAVLVALKERG R G A P R F 1 1 1 0 0 0 0 2 0 1 3 0 0 1 4 0 0 0 0 1 0 0 15 0 1559.9188 P26640;A0A140T936 P26640 619 633 VARS Valine--tRNA ligase yes no 2 0.0010467 43.512 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.69302 0.6757 8.3291 6 Median 0.63145 0.621 5.2354 2 0 Median 0.76287 0.67519 NaN 1 0 Median 0.69302 0.7409 2.7607 2 0 Median 0.79344 0.67622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9260700 5316000 3944700 4485800 2662400 1823400 625520 339030 286490 2860600 1633700 1226900 1288800 680870 607890 0 0 0 0 0 0 10409 2148 10834 51664;51665;51666;51667;51668;51669 51724;51725;51726;51727 51724 4 GALIVLEGVDR ______________________________ AARRGALIVLEGVDRAGKSTQSRKLVEALC R G A D R A 1 1 0 1 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 11 0 1140.6503 P23919;G5E9E9 P23919 6 16 DTYMK Thymidylate kinase yes no 2 0.00019975 96.331 By MS/MS 2 1.1113 1.0537 NaN 1 Median 1.1113 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10864000 3880300 6984000 10864000 3880300 6984000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10410 2120 10835 51670;51671 51728;51729 51728 2 GALKEPIHIPK KHIREVIQERTIHLKGALKEPIHIPKTAPA IHLKGALKEPIHIPKTAPATRQKGRRDGED K G A P K T 1 0 0 0 0 0 1 1 1 2 1 2 0 0 2 0 0 0 0 0 0 0 11 1 1201.7183 E7EWP2;O75962;E7EPJ7 E7EWP2 1540 1550 TRIO Triple functional domain protein yes no 3 0.063342 14.561 By MS/MS By matching By matching 1 1 2 0.78466 0.8873 12.357 4 Median 0.90128 0.97517 NaN 1 0 Median 0.76757 0.73028 NaN 1 0 Median 0.7772 0.8873 3.8509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7683300 3618000 4065300 2414500 947100 1467400 3120100 1425900 1694200 2148700 1245000 903640 0 0 0 0 0 0 0 0 0 10411 903 10836 51672;51673;51674;51675 51730 51730 1 GALLLSSIELEELKAENEK IASLQKRVVELENEKGALLLSSIELEELKA LSSIELEELKAENEKLSSQITLLEAQNRTG K G A E K L 2 0 1 0 0 0 5 1 0 1 5 2 0 0 0 2 0 0 0 0 0 0 19 1 2085.1205 Q14789;E7EU81;H0Y867 Q14789 485 503 GOLGB1 Golgin subfamily B member 1 yes no 3 0.00070746 45.704 By MS/MS 1 1.2758 1.2171 NaN 1 Median NaN NaN NaN 0 0 Median 1.2758 1.2171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8481800 3483800 4998000 0 0 0 8481800 3483800 4998000 0 0 0 0 0 0 0 0 0 0 0 0 10412 2900 10837 51676 51731 51731 0 GALLSVGWSTGR GAQPQLITFHPSFNKGALLSVGWSTGRIAH FNKGALLSVGWSTGRIAHIPLYFVNAQFPR K G A G R I 1 1 0 0 0 0 0 3 0 0 2 0 0 0 0 2 1 1 0 1 0 0 12 0 1202.6408 Q9NRG9;F8VZ44 Q9NRG9 467 478 AAAS Aladin yes no 2 0.00067049 62.303 By MS/MS By matching 1 1 1.254 1.172 0.35541 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1641 1.1749 NaN 1 0 Median 1.3508 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9828100 4258700 5569400 0 0 0 0 0 0 9024500 3922300 5102100 803580 336370 467220 0 0 0 0 0 0 10413 4082 10838 51677;51678 51732 51732 1 GALMLENLQK LAKSGQKSALVKRLKGALMLENLQKHSTPH VKRLKGALMLENLQKHSTPHAAFQPNSQIG K G A Q K H 1 0 1 0 0 1 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 10 0 1115.6009 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 46 55 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.00034627 86.833 By matching By MS/MS 1 1 0.99245 0.96493 13.419 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97153 0.87758 NaN 1 0 Median 1.0138 1.061 NaN 1 0 Median NaN NaN NaN 0 0 Median 8742700 3786600 4956100 0 0 0 0 0 0 0 0 0 136770 54654 82118 8605900 3731900 4873900 0 0 0 10414 4560 10839 51679;51680 51733 51733 1 GALPLDTVTFYK LLLSAPHGGSGLHTKGALPLDTVTFYKVIP HTKGALPLDTVTFYKVIPKSKFVLVKFDTQ K G A Y K V 1 0 0 1 0 0 0 1 0 0 2 1 0 1 1 0 2 0 1 1 0 0 12 0 1323.7075 P30040 P30040 37 48 ERP29 Endoplasmic reticulum resident protein 29 yes yes 2 0.00016877 86.624 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1 1.0749 0.98595 12.482 8 Median 0.99726 0.92668 4.7669 2 0 Median 1.1145 0.92957 12.328 2 0 Median 0.96954 0.90979 NaN 1 0 Median 1.2799 1.0617 NaN 1 0 Median 1.1305 1.1501 NaN 1 0 Median 1.4411 1.2128 NaN 1 0 Median 250980000 121610000 129370000 133350000 67524000 65822000 27951000 12266000 15685000 71687000 34512000 37175000 9427500 4131400 5296100 6989300 2537400 4451900 1581100 637860 943240 10415 2178 10840 51681;51682;51683;51684;51685;51686;51687;51688 51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744;51745;51746 51734 13 GALQAVDQLSLFR ILLLGGAASTLLQNRGALQAVDQLSLFRPL NRGALQAVDQLSLFRPLCKFCVSVRRVRDI R G A F R P 2 1 0 1 0 2 0 1 0 0 3 0 0 1 0 1 0 0 0 1 0 0 13 0 1416.7725 M0R026;A1L0T0;M0R1B5;E9PJS0 M0R026 51 63 ILVBL Acetolactate synthase-like protein yes no 2 0.0015521 51.927 By MS/MS 1 1.2778 1.1057 NaN 1 Median NaN NaN NaN 0 0 Median 1.2778 1.1057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9509800 4142100 5367700 0 0 0 9509800 4142100 5367700 0 0 0 0 0 0 0 0 0 0 0 0 10416 492 10841 51689 51747 51747 1 GALQGSAWQVSSEDVR ESPTAENARLLAQKRGALQGSAWQVSSEDV ALQGSAWQVSSEDVRWDTFPLGRMPGQTED R G A V R W 2 1 0 1 0 2 1 2 0 0 1 0 0 0 0 3 0 1 0 2 0 0 16 0 1688.8118 Q9Y4W2 Q9Y4W2 631 646 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 4.1593E-08 131.37 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.0154 1.0377 14.55 5 Median NaN NaN NaN 0 0 Median 0.98761 0.89951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3054 1.1246 NaN 1 0 Median 0.87388 0.9472 12.9 2 0 Median 1.5497 1.2189 NaN 1 0 Median 16567000 8652800 7914000 0 0 0 731080 359780 371290 0 0 0 1421100 610610 810490 14115000 7524700 6589900 300000 157680 142330 10417 4448 10842 51690;51691;51692;51693;51694 51748;51749;51750 51748 3 GALQNIIPASTGAAK KTVDGPSGKLWRDGRGALQNIIPASTGAAK GALQNIIPASTGAAKAVGKVIPELNGKLTG R G A A K A 4 0 1 0 0 1 0 2 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1410.7831 P04406;E7EUT5 P04406 201 215 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 3.3282E-10 113.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 9 5 3 5 1 0.94782 0.86796 91.175 34 Plateau 0.74429 0.69517 24.672 11 1 Median 0.94535 0.81212 102.85 9 1 Median 0.73165 0.76349 55.81 5 0 Median 1.032 0.88597 185.22 3 1 Plateau 0.9677 0.52909 53.387 5 0 Plateau 0.051615 0.045396 NaN 1 0 Median 4487300000 2229900000 2257400000 3245500000 1590800000 1654700000 795170000 403150000 392030000 327490000 172540000 154950000 56804000 29381000 27423000 59649000 31489000 28160000 2699100 2550900 148230 10418 1850 10843 51695;51696;51697;51698;51699;51700;51701;51702;51703;51704;51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715;51716;51717;51718;51719;51720;51721;51722;51723;51724;51725;51726;51727;51728 51751;51752;51753;51754;51755;51756;51757;51758;51759;51760;51761;51762;51763;51764;51765;51766;51767;51768;51769;51770;51771;51772;51773;51774;51775;51776;51777;51778;51779;51780;51781;51782;51783;51784;51785;51786;51787;51788;51789;51790;51791;51792;51793;51794;51795;51796;51797;51798;51799;51800;51801;51802;51803;51804;51805;51806;51807;51808;51809;51810;51811;51812;51813;51814;51815;51816;51817;51818;51819;51820;51821;51822 51776 72 GALQNIIPASTGAAKAVGK KTVDGPSGKLWRDGRGALQNIIPASTGAAK NIIPASTGAAKAVGKVIPELNGKLTGMAFR R G A G K V 5 0 1 0 0 1 0 3 0 2 1 2 0 0 1 1 1 0 0 1 0 0 19 1 1766.005 P04406;E7EUT5 P04406 201 219 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 0.00063502 31.818 By MS/MS By matching By matching 1 2 1 0.76184 0.72949 17.061 4 Median 1.016 0.9454 NaN 1 0 Median 0.76184 0.68755 12.42 2 0 Median 0.67312 0.70891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17904000 8595100 9308800 9170400 3994100 5176300 7744200 4029500 3714700 989260 571540 417720 0 0 0 0 0 0 0 0 0 10419 1850 10844 51729;51730;51731;51732 51823 51823 1 GALQYLVPILTQTLTK EQGRPPEHTSKFYAKGALQYLVPILTQTLT ALQYLVPILTQTLTKQDENDDDDDWNPCKA K G A T K Q 1 0 0 0 0 2 0 1 0 1 4 1 0 0 1 0 3 0 1 1 0 0 16 0 1758.0291 Q14974 Q14974 317 332 KPNB1 Importin subunit beta-1 yes yes 2;3 1.5782E-07 97.439 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 3 5 2 1 1.0026 1.018 13.5 17 Median 0.99864 0.94857 6.9039 6 0 Median 1.1205 1.018 28.756 3 0 Median 0.97575 1.0493 3.807 5 0 Median 1.2053 1.054 4.019 2 0 Median NaN NaN NaN 0 0 Median 1.2204 1.0467 NaN 1 0 Median 135030000 66281000 68747000 70316000 34685000 35631000 30959000 14525000 16434000 31951000 16236000 15715000 1606200 734240 871930 0 0 0 195790 100360 95439 10420 2904 10845 51733;51734;51735;51736;51737;51738;51739;51740;51741;51742;51743;51744;51745;51746;51747;51748;51749 51824;51825;51826;51827;51828;51829;51830;51831;51832;51833;51834;51835;51836 51828 13 GALSALREEHR YEGLQDKLAQIRDARGALSALREEHREKLR RDARGALSALREEHREKLRRAAEEAERQRQ R G A H R E 2 2 0 0 0 0 2 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 11 1 1237.6527 O14964;I3L1E3 O14964 482 492 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 3 0.0051419 53.237 By MS/MS By MS/MS 2 1 1.2304 1.2173 9.0715 3 Median NaN NaN NaN 0 0 Median 1.2253 1.2122 0.59166 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5689 1.4183 NaN 1 1 Median 6700100 2872500 3827600 0 0 0 6186400 2695100 3491300 0 0 0 0 0 0 0 0 0 513700 177440 336260 10421 1506 10846 51750;51751;51752 51837;51838;51839 51837 3 GALTGGYYDTR TMDCITLEGDQVSHRGALTGGYYDTRKSRL VSHRGALTGGYYDTRKSRLELQKDVRKAEE R G A T R K 1 1 0 1 0 0 0 3 0 0 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1172.5462 Q9UQE7 Q9UQE7 662 672 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.1022E-05 119.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 3 1.077 0.96056 31.11 9 Median NaN NaN NaN 0 0 Median 1.3229 1.111 NaN 1 0 Median 0.58098 0.62955 62.592 2 0 Median 1.1329 0.96056 NaN 1 1 Median 0.91778 0.93211 22.672 2 0 Median 1.2074 0.98728 10.096 3 0 Plateau 104790000 49650000 55140000 0 0 0 6929400 2170500 4758900 26325000 13900000 12425000 8301900 3654000 4647800 47163000 22659000 24504000 16071000 7266400 8804100 10422 4362 10847 51753;51754;51755;51756;51757;51758;51759;51760;51761 51840;51841;51842;51843;51844;51845;51846;51847;51848 51845 9 GALTGGYYDTRK TMDCITLEGDQVSHRGALTGGYYDTRKSRL SHRGALTGGYYDTRKSRLELQKDVRKAEEE R G A R K S 1 1 0 1 0 0 0 3 0 0 1 1 0 0 0 0 2 0 2 0 0 0 12 1 1300.6412 Q9UQE7 Q9UQE7 662 673 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.00035116 70.1 By MS/MS By MS/MS By MS/MS 2 2 4 1.0187 1.0726 22.786 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70377 0.80124 29.104 2 1 Median NaN NaN NaN 0 0 Median 1.0187 1.1523 2.0433 2 0 Median 1.2152 1.0726 21.405 4 0 Median 19646000 9622500 10024000 0 0 0 0 0 0 4421800 2555300 1866600 0 0 0 8641800 4152200 4489600 6582500 2915000 3667500 10423 4362 10848 51762;51763;51764;51765;51766;51767;51768;51769 51849;51850;51851;51852;51853;51854;51855 51852 7 GALTLSSPEVR LNKLAKILKKRRIEKGALTLSSPEVRFHMD RIEKGALTLSSPEVRFHMDSETHDPIDLQT K G A V R F 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 2 1 0 0 1 0 0 11 0 1128.6139 Q9Y2L1;G3V1J5 Q9Y2L1 628 638 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.0029417 74.92 By MS/MS 1 1.0539 0.89627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0539 0.89627 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3195000 1252700 1942300 0 0 0 0 0 0 0 0 0 3195000 1252700 1942300 0 0 0 0 0 0 10424 4384 10849 51770 51856 51856 1 GALTTVEGLITR RIPELDFEIPAFSQKGALTTVEGLITRAIS SQKGALTTVEGLITRAISGLEQDQPARRAN K G A T R A 1 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 3 0 0 1 0 0 12 0 1229.698 H7C0E5;H7BZM7;O75312 H7C0E5 84 95 ZPR1 Zinc finger protein ZPR1 yes no 2 0.053644 25.386 By MS/MS 2 1.2327 1.0787 14.607 2 Median NaN NaN NaN 0 0 Median 1.2327 1.0787 14.607 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3033300 1418600 1614700 0 0 0 3033300 1418600 1614700 0 0 0 0 0 0 0 0 0 0 0 0 10425 1252 10850 51771;51772 51857;51858 51857 2 GALTVGITNTVGSSISR ETADTLMGLRYCKERGALTVGITNTVGSSI LTVGITNTVGSSISRETDCGVHINAGPEIG R G A S R E 1 1 1 0 0 0 0 3 0 2 1 0 0 0 0 3 3 0 0 2 0 0 17 0 1631.8842 Q06210 Q06210 458 474 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 2.2879E-12 103.88 By MS/MS 1 1.2207 1.155 NaN 1 Median 1.2207 1.155 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11578000 6061200 5516900 11578000 6061200 5516900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10426 2723 10851 51773 51859 51859 1 GALVLCAHNTIHK G A H K 2 0 1 0 1 0 0 1 2 1 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1432.7609 REV__Q96LW7 yes yes 2 0.00078848 65.224 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.96039 0.84868 26.574 8 Median 0.9325 0.85073 32.258 3 0 Plateau 1.0091 0.84663 7.3502 3 0 Median 0.9891 0.95429 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1706 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median 334050000 165010000 169050000 258830000 128280000 130550000 20372000 9978900 10393000 50216000 24612000 25605000 0 0 0 4631600 2131300 2500300 0 0 0 + 10427 4555 10852 51774;51775;51776;51777;51778;51779;51780;51781 51860;51861;51862;51863;51864;51865 51860 6 GALVLGSSLK DQAFVTLTTNDAYAKGALVLGSSLKQHRTT DAYAKGALVLGSSLKQHRTTRRLVVLATPQ K G A L K Q 1 0 0 0 0 0 0 2 0 0 3 1 0 0 0 2 0 0 0 1 0 0 10 0 943.57023 P46976;C9JQ42;G5E9W8 P46976 18 27 GYG1 Glycogenin-1 yes no 2 0.0007343 99.139 By MS/MS By MS/MS By matching 2 3 1 1.0931 0.95961 41.877 6 Median 1.1731 1.1632 45.584 2 0 Median 1.1369 1.0129 8.3738 3 0 Plateau 2.142 2.3546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32950000 13853000 19098000 9143400 3344800 5798600 22250000 9949200 12301000 1557000 558710 998320 0 0 0 0 0 0 0 0 0 10428 2351 10853 51782;51783;51784;51785;51786;51787 51866;51867;51868;51869 51869 4 GALVVVNDLGGDFK GAGLGRAYALAFAERGALVVVNDLGGDFKG RGALVVVNDLGGDFKGVGKGSLAADKVVEE R G A F K G 1 0 1 2 0 0 0 3 0 0 2 1 0 1 0 0 0 0 0 3 0 0 14 0 1402.7456 A0A2R8YD50;P51659;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 33 46 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.00014046 80.763 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.99781 0.9714 101.92 6 Median 0.76688 0.69541 130.82 3 0 Median NaN NaN NaN 0 0 Median 0.99351 0.95573 NaN 1 0 Median 1.3888 1.1716 NaN 1 0 Median 1.2733 1.331 NaN 1 0 Median NaN NaN NaN 0 0 Median 33134000 18386000 14748000 20322000 12293000 8029200 0 0 0 9165500 4566200 4599300 2298200 896720 1401400 1347900 629790 718110 0 0 0 10429 393 10854 51788;51789;51790;51791;51792;51793 51870;51871;51872;51873 51872 4 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER MGQMAMGGAMGINNRGAMPPAPVPAGTPAP MPDGTLGLTPPTTERFGQAATMEGIGAIGG R G A E R F 5 1 0 1 0 0 1 5 0 0 2 0 3 0 11 0 6 0 0 1 0 0 36 0 3450.6986 Q15233 Q15233 399 434 NONO Non-POU domain-containing octamer-binding protein yes yes 3 2.2202E-20 78.531 By MS/MS 2 0.14543 0.14442 1.0493 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.14543 0.14442 1.0493 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44682000 41435000 3246900 0 0 0 0 0 0 44682000 41435000 3246900 0 0 0 0 0 0 0 0 0 10430 2935 10855 51794;51795 51874;51875;51876 51875 1614;1615 3 GANAVGYTNYPDNVVFK LRELIPNIPFQMLLRGANAVGYTNYPDNVV NAVGYTNYPDNVVFKFCEVAKENGMDVFRV R G A F K F 2 0 3 1 0 0 0 2 0 0 0 1 0 1 1 0 1 0 2 3 0 0 17 0 1827.8792 P11498 P11498 645 661 PC Pyruvate carboxylase, mitochondrial yes yes 2 2.9971E-05 53.967 By MS/MS By matching 1 1 0.91604 0.83846 8.4395 2 Median 0.81568 0.78989 NaN 1 0 Median 1.0287 0.89002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11628000 6096500 5531600 10271000 5476300 4794300 1357500 620150 737320 0 0 0 0 0 0 0 0 0 0 0 0 10431 1967 10856 51796;51797 51877;51878 51878 2 GANFLTQILLRPGASDLTGSFR GSSDPAILASWDYSRGANFLTQILLRPGAS ILLRPGASDLTGSFRLYRKEVLEKLIEKCV R G A F R L 2 2 1 1 0 1 0 3 0 1 4 0 0 2 1 2 2 0 0 0 0 0 22 1 2333.2492 Q5QPK2;H0Y368;O60762;Q5QPJ9 Q5QPK2 194 215 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 3 0.0073048 22.636 By MS/MS By MS/MS By matching 1 1 1 1.3783 1.1706 20.118 3 Median 0.87068 0.9307 NaN 1 0 Median 1.3783 1.1706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5602 1.3898 NaN 1 0 Median 4632400 2109900 2522600 3163500 1496300 1667100 645280 284010 361270 0 0 0 0 0 0 0 0 0 823700 329510 494190 10432 1142 10857 51798;51799;51800 51879;51880 51879 2 GANIQLLDLPGIIEGAAQGK EFTTLTCIPGVIEYKGANIQLLDLPGIIEG LLDLPGIIEGAAQGKGRGRQVIAVARTADV K G A G K G 3 0 1 1 0 2 1 4 0 3 3 1 0 0 1 0 0 0 0 0 0 0 20 0 1977.0895 P55039;A8MZF9;J3QKW7;J3QR71;J3QRI9 P55039 108 127 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 3.6178E-05 42.789 By MS/MS By MS/MS By MS/MS 1 1 1 1.0093 0.93044 27.389 3 Median 0.95024 0.93044 NaN 1 0 Median 1.0093 0.86505 NaN 1 0 Median 1.2861 1.4357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6880300 3291200 3589100 987700 488070 499630 4370900 2095200 2275700 1521700 707870 813830 0 0 0 0 0 0 0 0 0 10433 2492 10858 51801;51802;51803 51881;51882;51883;51884;51885 51885 5 GANLEEVNDEGYTPLMEAAR ACGGHVELAALLIERGANLEEVNDEGYTPL EVNDEGYTPLMEAAREGHEEMVALLLAQGA R G A A R E 3 1 2 1 0 0 4 2 0 0 2 0 1 0 1 0 1 0 1 1 0 0 20 0 2177.9899 Q8IWZ3;E9PDP5 Q8IWZ3 461 480 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 yes no 2 8.4296E-06 49.12 By MS/MS 1 0.86524 0.86824 NaN 1 Median 0.86524 0.86824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1946000 985650 960320 1946000 985650 960320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10434 3329 10859 51804 51886 51886 1 GANLKDYYSR VGASGYGVPGPTWDRGANLKDYYSRKEEQE PTWDRGANLKDYYSRKEEQEVQATLESEEV R G A S R K 1 1 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 2 0 0 0 10 1 1185.5778 Q08211 Q08211 142 151 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0.00072024 105.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 3 1.0481 1.0674 39.225 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0568 1.1984 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0481 1.1919 49.743 3 0 Plateau 1.2345 1.0674 NaN 1 0 Median 78279000 26673000 51606000 1276000 0 1276000 0 0 0 27930000 8936100 18993000 0 0 0 40678000 15650000 25028000 8394900 2086300 6308600 10435 2736 10860 51805;51806;51807;51808;51809;51810;51811;51812;51813;51814;51815 51887;51888;51889;51890;51891;51892;51893;51894;51895;51896;51897;51898 51892 12 GANPVEIR LARSIAKEGFEKISKGANPVEIRRGVMLAV GFEKISKGANPVEIRRGVMLAVDAVIAELK K G A I R R 1 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 8 0 854.46102 P10809;E7ESH4;E7EXB4 P10809 134 141 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0024483 134.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1966 1.0081 8.2522 5 Median 1.012 0.95348 NaN 1 0 Median 1.2036 1.0255 2.4066 2 0 Median 0.90778 0.93938 NaN 1 0 Median 1.3798 1.1544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 174600000 80010000 94589000 31668000 16088000 15580000 137510000 61277000 76234000 4458300 2229500 2228800 962120 415500 546620 0 0 0 0 0 0 10436 1947 10861 51816;51817;51818;51819;51820 51899;51900;51901;51902;51903;51904;51905;51906;51907;51908 51903 10 GANQWIK LGYHIYSSDPPFEVRGANQWIKFKSVS___ SDPPFEVRGANQWIKFKSVS__________ R G A I K F 1 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 7 0 815.42899 P08559;Q5JPU3 P08559 379 385 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 0.0030756 109.88 By MS/MS 1 0.81263 0.69437 NaN 1 Median NaN NaN NaN 0 0 Median 0.81263 0.69437 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6236900 3720000 2516900 0 0 0 6236900 3720000 2516900 0 0 0 0 0 0 0 0 0 0 0 0 10437 1902 10862 51821 51909 51909 1 GANRTETVTSFR MSGKHDVGAYMLMYKGANRTETVTSFRKRE MYKGANRTETVTSFRKRESKVPADLLKRAF K G A F R K 1 2 1 0 0 0 1 1 0 0 0 0 0 1 0 1 3 0 0 1 0 0 12 1 1337.6688 P78527 P78527 3861 3872 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.0001694 76.073 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 3 2 1 0.8844 0.99091 29.81 10 Median 0.80915 0.87931 20.34 3 0 Median 0.68858 0.58479 NaN 1 0 Median 0.88878 1.0053 6.7946 3 0 Median NaN NaN NaN 0 0 Median 0.72236 0.78314 42.804 2 1 Median 1.6926 1.4856 NaN 1 0 Median 37473000 18868000 18605000 7371100 3907800 3463300 481590 320200 161390 21685000 11166000 10520000 0 0 0 6133700 2981300 3152400 1801400 493450 1308000 10438 2647 10863 51822;51823;51824;51825;51826;51827;51828;51829;51830;51831 51910;51911;51912;51913;51914;51915 51910 6 GAPAAATAPAPTAHK FKLNRKKLEGGGERRGAPAAATAPAPTAHK GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R G A H K A 7 0 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 15 0 1330.6993 Q92522 Q92522 129 143 H1FX Histone H1x yes yes 2;3 0.00040157 42.001 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 3 3 1 3 3 0.715 0.64426 17.43 14 Median 0.70236 0.69451 NaN 1 0 Median 0.76265 0.64662 12.026 3 0 Median 0.51918 0.49152 4.589 3 0 Median 0.88417 0.71242 NaN 1 0 Median 0.49783 0.51169 18.832 3 0 Median 0.86589 0.70921 6.9826 3 0 Median 14559000 9142700 5416700 1032700 613450 419230 964510 548570 415940 3123500 1991500 1131900 138100 76685 61416 8683700 5603400 3080300 616950 309100 307850 10439 3531 10864 51832;51833;51834;51835;51836;51837;51838;51839;51840;51841;51842;51843;51844;51845 51916;51917;51918;51919;51920 51920 5 GAPANVSSSDLTGR SRVDRERKVSMRLHRGAPANVSSSDLTGRQ RGAPANVSSSDLTGRQEVSRIPASQTSVPF R G A G R Q 2 1 1 1 0 0 0 2 0 0 1 0 0 0 1 3 1 0 0 1 0 0 14 0 1330.6477 P49674;H0Y5S9;H0Y682 P49674 383 396 CSNK1E Casein kinase I isoform epsilon yes no 2 0.040486 38.634 By MS/MS 1 0.90087 0.9076 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90087 0.9076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2077000 1135100 941830 0 0 0 0 0 0 2077000 1135100 941830 0 0 0 0 0 0 0 0 0 10440 2390 10865 51846 51921 51921 1 GAPEGVIDR PNKPSRTSMSKMFVKGAPEGVIDRCTHIRV SKMFVKGAPEGVIDRCTHIRVGSTKVPMTS K G A D R C 1 1 0 1 0 0 1 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 912.46649 P16615;H7C5W9;O14983 P16615 515 523 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.014167 44.753 By MS/MS 4 1.1478 0.98333 6.6291 4 Median NaN NaN NaN 0 0 Median 1.1478 0.98333 6.6291 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11066000 4947800 6118000 0 0 0 11066000 4947800 6118000 0 0 0 0 0 0 0 0 0 0 0 0 10441 2031 10866 51847;51848;51849;51850 51922;51923;51924;51925;51926;51927 51922 6 GAPGQPGTILR ATGHGQQGVTQVVLKGAPGQPGTILRTVPM VVLKGAPGQPGTILRTVPMGGVRLVTPVTV K G A L R T 1 1 0 0 0 1 0 3 0 1 1 0 0 0 2 0 1 0 0 0 0 0 11 0 1065.5931 A6NEM2;P51610 A6NEM2 837 847 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.000145 116.73 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 2 1 2 0.8435 0.73207 21.878 8 Median NaN NaN NaN 0 0 Median 1.0628 0.90208 NaN 1 0 Median 0.65419 0.71032 5.752 2 0 Median 1.0526 0.90928 38.445 2 0 Median 0.54793 0.57336 NaN 1 0 Median 0.907 0.74552 4.0612 2 0 Median 45141000 25200000 19941000 0 0 0 3864100 1909900 1954200 23646000 14099000 9546600 7278400 3327900 3950500 4721000 2995700 1725300 5631300 2867000 2764300 10442 509;2438 10867 51851;51852;51853;51854;51855;51856;51857;51858 51928;51929;51930;51931;51932;51933;51934 51929 7 GAPIETLGYHSASNR VSSSCLDLPDSTEEKGAPIETLGYHSASNR GAPIETLGYHSASNRRMSGEPIQTVESIRV K G A N R R 2 1 1 0 0 0 1 2 1 1 1 0 0 0 1 2 1 0 1 0 0 0 15 0 1571.7692 Q5VT52 Q5VT52 1082 1096 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.00024118 66.267 By MS/MS 2 0.46055 0.51105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46055 0.51105 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3151300 2401200 750060 0 0 0 0 0 0 3151300 2401200 750060 0 0 0 0 0 0 0 0 0 10443 3110 10868 51859;51860 51935;51936 51935 2 GAPLNTPVTEDR DPGAFKELFPDWKEKGAPLNTPVTEDRFGI KEKGAPLNTPVTEDRFGILTEKYRIPVPIL K G A D R F 1 1 1 1 0 0 1 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 12 0 1268.6361 Q16134 Q16134 135 146 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes yes 2 0.013999 54.608 By MS/MS 1 11.947 10.329 NaN 1 Median NaN NaN NaN 0 0 Median 11.947 10.329 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15946000 1395400 14551000 0 0 0 15946000 1395400 14551000 0 0 0 0 0 0 0 0 0 0 0 0 10444 2979 10869 51861 51937 51937 1 GAPLVKPLPVNPTDPAVTGPDIFAK YHEAVPALDTLQPVKGAPLVKPLPVNPTDP NPTDPAVTGPDIFAKLVPMAAHEASSLYSE K G A A K L 3 0 1 2 0 0 0 2 0 1 2 2 0 1 6 0 2 0 0 3 0 0 25 1 2513.3894 Q9H3S7 Q9H3S7 335 359 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 yes yes 3 1.2427E-05 36.9 By MS/MS By matching 1 1 0.28526 0.30249 22.145 2 Median 0.2637 0.25865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.30858 0.35377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7110600 5263100 1847500 5941500 4363600 1577900 0 0 0 1169100 899520 269560 0 0 0 0 0 0 0 0 0 10445 3958 10870 51862;51863 51938 51938 1 GAPPSSNIEDFHGLLPK GPGPLQERSLFEKKRGAPPSSNIEDFHGLL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS R G A P K G 1 0 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 17 0 1777.8999 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 271 287 MATR3 Matrin-3 yes no 2;3 0.0010963 33.409 By MS/MS By MS/MS By MS/MS 2 3 4 0.67416 0.67514 20.687 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64913 0.69446 5.4929 2 0 Median 0.85724 0.73086 33.215 3 0 Median 0.62302 0.64053 10.186 4 0 Median NaN NaN NaN 0 0 Median 157860000 94482000 63378000 0 0 0 0 0 0 68344000 40891000 27453000 3088300 1707900 1380400 86428000 51883000 34544000 0 0 0 10446 297 10871 51864;51865;51866;51867;51868;51869;51870;51871;51872 51939;51940;51941;51942;51943;51944;51945;51946;51947;51948;51949;51950;51951;51952;51953;51954;51955;51956;51957;51958;51959;51960 51945 22 GAPQSLLLSESGK DLKSLRHDRVRLVERGAPQSLLLSESGKIL ERGAPQSLLLSESGKILPGVKVVIVNPETK R G A G K I 1 0 0 0 0 1 1 2 0 0 3 1 0 0 1 3 0 0 0 0 0 0 13 0 1285.6878 Q9P265 Q9P265 1355 1367 DIP2B Disco-interacting protein 2 homolog B yes yes 2 0.019053 31.431 By MS/MS 1 0.39144 0.41882 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39144 0.41882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9175900 7176300 1999600 0 0 0 0 0 0 9175900 7176300 1999600 0 0 0 0 0 0 0 0 0 10447 4215 10872 51873 51961 51961 1 GAPTTSLISVAVTK NNAIAMICGNVCLWKGAPTTSLISVAVTKI KGAPTTSLISVAVTKIIAKVLEDNKLPGAI K G A T K I 2 0 0 0 0 0 0 1 0 1 1 1 0 0 1 2 3 0 0 2 0 0 14 0 1343.766 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0;H0YHM6;A0A1B0GVU0 P49419 219 232 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.00025262 75.695 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.88216 0.7912 22.189 4 Median 0.70095 0.64429 NaN 1 0 Median 1.2624 1.0721 NaN 1 0 Median 0.7192 0.72429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0821 0.8643 NaN 1 0 Median 60474000 34945000 25528000 43678000 25780000 17899000 7178000 3345800 3832100 4656300 3144300 1512000 0 0 0 0 0 0 4961000 2675500 2285400 10448 318 10873 51874;51875;51876;51877 51962;51963;51964 51962 3 GAPVNISSSDLTGR SGMERERKVSMRLHRGAPVNISSSDLTGRQ RGAPVNISSSDLTGRQDTSRMSTSQIPGRV R G A G R Q 1 1 1 1 0 0 0 2 0 1 1 0 0 0 1 3 1 0 0 1 0 0 14 0 1372.6947 P48730;H7BYT1;J3KRM8 P48730 376 389 CSNK1D Casein kinase I isoform delta yes no 2 1.7496E-06 122.42 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0864 0.93314 27.914 4 Median 1.2444 1.4699 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77944 0.76747 NaN 1 0 Median 1.0266 0.88405 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1496 0.98495 NaN 1 0 Median 44378000 19514000 24864000 16499000 5162500 11337000 0 0 0 13293000 7274900 6018300 13575000 6557600 7017300 0 0 0 1010800 519440 491400 10449 1248 10874 51878;51879;51880;51881 51965;51966;51967 51967 3 GAQAAIVVYDITNQETFAR AGQERYHSLAPMYYRGAQAAIVVYDITNQE AIVVYDITNQETFARAKTWVKELQRQASPS R G A A R A 4 1 1 1 0 2 1 1 0 2 0 0 0 1 0 0 2 0 1 2 0 0 19 0 2066.0433 P61020;F8VUA5 P61020 92 110 RAB5B Ras-related protein Rab-5B yes no 2 1.0463E-06 59.898 By MS/MS 1 0.87067 0.82127 NaN 1 Median 0.87067 0.82127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3646200 2218700 1427500 3646200 2218700 1427500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10450 2538 10875 51882 51968 51968 1 GAQAAIVVYDITNTDTFAR AGQERYHSLAPMYYRGAQAAIVVYDITNTD AIVVYDITNTDTFARAKNWVKELQRQASPN R G A A R A 4 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 3 0 1 2 0 0 19 0 2025.0167 P51148;K7ERI8;K7ERQ8;F8VVK3;K7ENY4 P51148 93 111 RAB5C Ras-related protein Rab-5C yes no 2;3 1.1324E-07 72.496 By MS/MS By matching By matching 3 2 1 1.3074 1.1713 33.333 6 Median 1.2552 1.1843 27.684 3 0 Median 1.4611 1.2425 9.9135 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7021 0.65739 NaN 1 0 Median 15215000 6395700 8819100 12078000 4943500 7134800 2672300 1169100 1503200 0 0 0 0 0 0 0 0 0 464280 283190 181090 10451 2427 10876 51883;51884;51885;51886;51887;51888 51969;51970;51971 51970 3 GAQATLSSTTK FVFLLDRGLDIYVWRGAQATLSSTTKARLF YVWRGAQATLSSTTKARLFAEKINKNERKG R G A T K A 2 0 0 0 0 1 0 1 0 0 1 1 0 0 0 2 3 0 0 0 0 0 11 0 1063.551 Q13045 Q13045 661 671 FLII Protein flightless-1 homolog yes yes 2 0.06433 42.395 By MS/MS 1 1.2467 1.0761 NaN 1 Median NaN NaN NaN 0 0 Median 1.2467 1.0761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1330900 527910 802940 0 0 0 1330900 527910 802940 0 0 0 0 0 0 0 0 0 0 0 0 10452 2781 10877 51889 51972 51972 1 GAQEEEPTDPQLMR NVLCEIKEKTVLSIRGAQEEEPTDPQLMRL RGAQEEEPTDPQLMRLDNMLLAEGVAGPEK R G A M R L 1 1 0 1 0 2 3 1 0 0 1 0 1 0 2 0 1 0 0 0 0 0 14 0 1599.7199 H0YKH1;A0A087X0P4;H0YLF5;A0A0A0MTI0;P40424;F8WA05 H0YKH1 22 35 PBX1 Pre-B-cell leukemia transcription factor 1 yes no 2 0.0018943 59.198 By MS/MS By MS/MS 1 1 0.45233 0.43859 28.295 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49078 0.53574 NaN 1 1 Median 0.41688 0.35906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18090000 11639000 6451200 0 0 0 0 0 0 14753000 9535200 5218300 3336300 2103300 1232900 0 0 0 0 0 0 10453 108 10878 51890;51891 51973;51974 51973 2 GAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTR PFNTYPRADTDHPSRGAQGEPHDVAPNGPS AIPQSSSSSSRPPTRARGAPSPGVLGPHAS R G A T R A 4 2 1 1 0 2 1 5 1 1 1 0 0 0 6 7 1 0 0 1 0 0 34 1 3268.5821 O96013 O96013 219 252 PAK4 Serine/threonine-protein kinase PAK 4 yes yes 4 1.898E-08 50.583 By MS/MS 1 0.75491 0.84242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75491 0.84242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10176000 7033800 3142500 0 0 0 0 0 0 10176000 7033800 3142500 0 0 0 0 0 0 0 0 0 10454 1807 10879 51892 51975 51975 1 GAQGVILVYDVTRR AGQERFRTLTPSYYRGAQGVILVYDVTRRD RGAQGVILVYDVTRRDTFVKLDNWLNELET R G A R R D 1 2 0 1 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 3 0 0 14 1 1545.8627 Q9NP72;A0A087X163;H0Y6T8 Q9NP72 80 93 RAB18 Ras-related protein Rab-18 yes no 2 0.013107 34.755 By MS/MS 1 2.665 2.8487 NaN 1 Median 2.665 2.8487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7060400 1989000 5071400 7060400 1989000 5071400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10455 4041 10880 51893 51976 51976 1 GAQYQPILR SYNGEPQSWFQRQLRGAQYQPILRDHICKD FQRQLRGAQYQPILRDHICKDMSALVAARM R G A L R D 1 1 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1044.5716 P26358;K7ENW7 P26358 1402 1410 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 4.4388E-12 162.51 By MS/MS By MS/MS By matching 2 1 1 0.88634 0.86917 12.626 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72796 0.81301 9.3858 2 1 Median 0.98564 0.86955 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2347 1.0351 NaN 1 0 Median 43277000 23759000 19518000 0 0 0 0 0 0 32735000 18462000 14273000 9641000 4862800 4778300 0 0 0 900400 434050 466350 10456 2142 10881 51894;51895;51896;51897 51977;51978;51979 51977 3 GASDVGAGEPGPER PKPPQPPRASQSPLRGASDVGAGEPGPERA RGASDVGAGEPGPERAPLSPGRKGAAGRKG R G A E R A 2 1 0 1 0 0 2 4 0 0 0 0 0 0 2 1 0 0 0 1 0 0 14 0 1297.5899 A0A1B0GW05 A0A1B0GW05 29 42 yes yes 2 0.038049 42.001 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10457 326 10882 51898 51980 51980 1 GASGPQVGNALGSLEPLR LQFRAVCARGRGGARGASGPQVGNALGSLE GPQVGNALGSLEPLRWMLRSPFDRNVPVNL R G A L R W 2 1 1 0 0 1 1 4 0 0 3 0 0 0 2 2 0 0 0 1 0 0 18 0 1721.906 Q9H9F9 Q9H9F9 74 91 ACTR5 Actin-related protein 5 yes yes 2 0.00071597 51.726 By MS/MS 1 0.77789 0.81662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77789 0.81662 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4788200 2621500 2166700 0 0 0 0 0 0 4788200 2621500 2166700 0 0 0 0 0 0 0 0 0 10458 3999 10883 51899 51981 51981 1 GASGSFVVVQK KRELNRGVIKQVKGKGASGSFVVVQKSRKT VKGKGASGSFVVVQKSRKTPQKSRNRKNRS K G A Q K S 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 2 0 0 0 3 0 0 11 0 1077.5819 Q5SSJ5;X6RGJ2;Q5SWC8 Q5SSJ5 223 233 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.029153 49.418 By MS/MS By MS/MS 1 1 1.0682 0.99876 22.937 2 Median NaN NaN NaN 0 0 Median 1.365 1.1746 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83589 0.84922 NaN 1 1 Median NaN NaN NaN 0 0 Median 27323000 14590000 12733000 0 0 0 2989600 1272100 1717600 0 0 0 0 0 0 24333000 13318000 11016000 0 0 0 10459 3075 10884 51900;51901 51982;51983 51982 2 GASGTFQLK QRAVERGQLEQITGKGASGTFQLKKSGEKP EQITGKGASGTFQLKKSGEKPLLGGSLMEY K G A L K K 1 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 907.47633 Q5SSJ5;B0QZK4 Q5SSJ5 321 329 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0011629 84.568 By matching By MS/MS 1 1 0.73192 0.7121 10.224 2 Median NaN NaN NaN 0 0 Median 0.84032 0.76549 NaN 1 0 Median 0.6375 0.66244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6933200 4392300 2541000 0 0 0 485380 271170 214210 6447900 4121100 2326700 0 0 0 0 0 0 0 0 0 10460 3075 10885 51902;51903 51984;51985 51985 2 GASGTFQLKK QRAVERGQLEQITGKGASGTFQLKKSGEKP QITGKGASGTFQLKKSGEKPLLGGSLMEYA K G A K K S 1 0 0 0 0 1 0 2 0 0 1 2 0 1 0 1 1 0 0 0 0 0 10 1 1035.5713 Q5SSJ5;B0QZK4 Q5SSJ5 321 330 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0013889 69.628 By MS/MS 1 0.67863 0.7605 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67863 0.7605 NaN 1 0 Median NaN NaN NaN 0 0 Median 4169500 2230800 1938700 0 0 0 0 0 0 0 0 0 0 0 0 4169500 2230800 1938700 0 0 0 10461 3075 10886 51904 51986;51987 51987 2 GASGTREDPNLVPSISNK AAKKGLDPYNVLAPKGASGTREDPNLVPSI GTREDPNLVPSISNKRIVGCICEEDNTSVV K G A N K R 1 1 2 1 0 0 1 2 0 1 1 1 0 0 2 3 1 0 0 1 0 0 18 1 1840.9279 P10606 P10606 69 86 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 3 3.8642E-06 51.535 By MS/MS By MS/MS 1 1 0.81959 0.76259 30.996 2 Median 0.62463 0.6125 NaN 1 0 Median 1.0754 0.94947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11119000 5199500 5919200 3951000 2385200 1565800 7167700 2814200 4353500 0 0 0 0 0 0 0 0 0 0 0 0 10462 1943 10887 51905;51906 51988;51989;51990;51991 51990 4 GASGTREDPNLVPSISNKR AAKKGLDPYNVLAPKGASGTREDPNLVPSI TREDPNLVPSISNKRIVGCICEEDNTSVVW K G A K R I 1 2 2 1 0 0 1 2 0 1 1 1 0 0 2 3 1 0 0 1 0 0 19 2 1997.029 P10606 P10606 69 87 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 3;4 5.8023E-07 57.745 By MS/MS By MS/MS 2 2 0.88224 0.95181 32.369 4 Median 0.66797 0.75391 4.3151 2 0 Median 1.2538 1.2929 14.669 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51826000 26190000 25636000 19243000 11310000 7932800 32583000 14880000 17703000 0 0 0 0 0 0 0 0 0 0 0 0 10463 1943 10888 51907;51908;51909;51910 51992;51993;51994;51995;51996;51997;51998;51999 51995 8 GASIVEDK DDPNFFKMVEGFFDRGASIVEDKLVEDLRT VEGFFDRGASIVEDKLVEDLRTRESEEQKR R G A D K L 1 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 8 0 817.41815 P00367;P49448 P00367 77 84 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.020415 46.426 By MS/MS By matching By matching 1 1 1 1.2266 1.1412 8.5195 3 Median NaN NaN NaN 0 0 Median 1.4748 1.2938 NaN 1 0 Median 1.0044 1.0997 NaN 1 0 Median 1.2266 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1394400 608590 785770 0 0 0 920360 375880 544480 346230 168830 177400 127760 63878 63885 0 0 0 0 0 0 10464 1814 10889 51911;51912;51913 52000;52001 52000 2 GASIVEDKLVEDLR DDPNFFKMVEGFFDRGASIVEDKLVEDLRT RGASIVEDKLVEDLRTRESEEQKRNRVRGI R G A L R T 1 1 0 2 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 14 1 1542.8253 P00367 P00367 77 90 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2;3 7.8642E-05 100.55 By MS/MS By matching 2 1 1.0072 1.0046 15.827 3 Median 0.98567 0.98353 3.0035 2 1 Median 1.4182 1.2905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14778000 6458500 8319200 14372000 6307300 8064900 405550 151250 254300 0 0 0 0 0 0 0 0 0 0 0 0 10465 1814 10890 51914;51915;51916 52002;52003;52004 52004 3 GASKEILSEVER ITDCKDPKACTILLRGASKEILSEVERNLQ LLRGASKEILSEVERNLQDAMQVCRNVLLD R G A E R N 1 1 0 0 0 0 3 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 12 1 1316.6936 P49368;B4DUR8 P49368 378 389 CCT3 T-complex protein 1 subunit gamma yes no 2;3 0.0019196 79.659 By MS/MS 2 1.4367 1.4429 3.8793 2 Median 1.4367 1.4429 3.8793 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11739000 4961200 6777400 11739000 4961200 6777400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10466 2379 10891 51917;51918 52005;52006 52005 2 GASLEEVNDEGYTPLMEAAR ACGGHVELAALLIERGASLEEVNDEGYTPL EVNDEGYTPLMEAAREGHEEMVALLLGQGA R G A A R E 3 1 1 1 0 0 4 2 0 0 2 0 1 0 1 1 1 0 1 1 0 0 20 0 2150.979 H0YM23;O75179;A0A1W2PQ15 H0YM23 375 394 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 2.8566E-08 71.607 By MS/MS 1 0.96856 0.97157 NaN 1 Median 0.96856 0.97157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1985500 1075300 910240 1985500 1075300 910240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10467 1197 10892 51919 52007;52008 52007 2 GASQAGMLAPGTR PFDQTTISLQMGTNKGASQAGMLAPGTRRD NKGASQAGMLAPGTRRDIYDQKLTLQPVDN K G A T R R 3 1 0 0 0 1 0 3 0 0 1 0 1 0 1 1 1 0 0 0 0 0 13 0 1215.603 Q15417;E9PDU6 Q15417 213 225 CNN3 Calponin-3;Calponin yes no 2 0.00073014 66.595 By MS/MS By MS/MS 1 3 0.95105 0.80627 34.655 4 Median 1.4408 1.4539 NaN 1 0 Median 0.86686 0.72445 14.871 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5643300 3024900 2618300 1933000 976850 956130 3710300 2048100 1662200 0 0 0 0 0 0 0 0 0 0 0 0 10468 2950 10893 51920;51921;51922;51923 52009;52010;52011;52012;52013 52012 5 GASQAGMTGYGMPR QEGKNVIGLQMGTNRGASQAGMTGYGMPRQ RGASQAGMTGYGMPRQIL____________ R G A P R Q 2 1 0 0 0 1 0 4 0 0 0 0 2 0 1 1 1 0 1 0 0 0 14 0 1382.6071 P37802;C9J5W6;Q9UI15 P37802 183 196 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 yes no 2 8.3296E-24 201.75 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 3 3 1.0643 0.97313 15.348 17 Median 1.0404 0.98475 13.697 6 1 Median 1.1185 0.85928 5.8851 5 0 Plateau 1.1141 1.0691 2.9674 3 0 Median 1.2413 1.0226 28.205 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 449130000 217070000 232070000 330690000 160160000 170520000 51752000 25501000 26251000 61476000 29058000 32418000 5218200 2341900 2876200 0 0 0 0 0 0 10469 2269 10894;10895 51924;51925;51926;51927;51928;51929;51930;51931;51932;51933;51934;51935;51936;51937;51938;51939;51940 52014;52015;52016;52017;52018;52019;52020;52021;52022;52023;52024;52025;52026;52027;52028;52029;52030;52031;52032;52033;52034;52035;52036;52037;52038;52039;52040;52041 52030 1014;1015 28 GASSPYGAPGTPR VATSPGLNPMTPVHKGASSPYGAPGTPRMN HKGASSPYGAPGTPRMNLSSNLGGMATIPS K G A P R M 2 1 0 0 0 0 0 3 0 0 0 0 0 0 3 2 1 0 1 0 0 0 13 0 1216.5836 Q5UIP0;H7BZN3 Q5UIP0 399 411 RIF1 Telomere-associated protein RIF1 yes no 2 0.039973 25.979 By MS/MS 2 0.63539 0.70964 0.12201 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63539 0.70964 0.12201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2393700 1417300 976450 0 0 0 0 0 0 2393700 1417300 976450 0 0 0 0 0 0 0 0 0 10470 3109 10896 51941;51942 52042 52042 1 GASSSTNDASDPTTKEFETLIK VRSSTDSNNESKKGKGASSSTNDASDPTTK DASDPTTKEFETLIKDLSAENGLESLMLRS K G A I K D 2 0 1 2 0 0 2 1 0 1 1 2 0 1 1 4 4 0 0 0 0 0 22 1 2298.0863 O75976 O75976 886 907 CPD Carboxypeptidase D no no 3 0.043735 18.772 By MS/MS 1 0.92515 0.90655 NaN 1 Median 0.92515 0.90655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6174600 3217900 2956700 6174600 3217900 2956700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10471 1714 10897 51943 52043 52043 1 GASWIDTADGSANHR ASPYQAAEQDMRVLRGASWIDTADGSANHR GASWIDTADGSANHRARVTTRMGNTPDSAS R G A H R A 3 1 1 2 0 0 0 2 1 1 0 0 0 0 0 2 1 1 0 0 0 0 15 0 1556.6968 J3KQJ1;Q8NBJ7;E9PBT8;C9JL30;A8MXB9;A0A494C1B1;C9J660;J3QT17;H7C3B2 J3KQJ1 273 287 SUMF2 Sulfatase-modifying factor 2 yes no 2;3 0.0014708 39.266 By matching By MS/MS By MS/MS 2 2 2 1.2185 1.0532 24.666 6 Median 0.84078 0.79238 24.202 2 0 Median 1.5169 1.2843 1.4095 2 0 Median NaN NaN NaN 0 0 Median 1.2185 1.0532 9.8885 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16028000 7265800 8761800 11227000 5351300 5876100 2610300 1058400 1551900 0 0 0 2190000 856120 1333800 0 0 0 0 0 0 10472 1319 10898 51944;51945;51946;51947;51948;51949 52044;52045 52044 2 GATALEMGMPLLLQK VIPLVVHSAQKVHLRGATALEMGMPLLLQK GATALEMGMPLLLQKQQEIASITEQLMTTK R G A Q K Q 2 0 0 0 0 1 1 2 0 0 4 1 2 0 1 0 1 0 0 0 0 0 15 0 1571.8415 Q5UIP0;H7BZN3 Q5UIP0 203 217 RIF1 Telomere-associated protein RIF1 yes no 2 0.060386 35.414 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10473 3109 10899 51950 52046 52046 1 GATEITTTITK AKIQEEGTEVELTGKGATEITTTITKLSFV LTGKGATEITTTITKLSFVTVDSNLRRGIP K G A T K L 1 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 5 0 0 0 0 0 11 0 1134.6132 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 339 349 yes yes 2 0.0035681 72.243 By MS/MS By MS/MS 1 3 0.19209 0.080054 64.111 4 Linear 0.1352 0.13003 NaN 1 1 Median 0.15148 0.12681 64.028 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20625000 18973000 1652300 4355700 4026000 329700 16269000 14947000 1322600 0 0 0 0 0 0 0 0 0 0 0 0 + 10474 734 10900 51951;51952;51953;51954 52047;52048;52049;52050 52050 4 GATGEPEVMEPALEGTGK ______________________________ GEPEVMEPALEGTGKEGKKASSRKRTLAEP R G A G K E 2 0 0 0 0 0 4 4 0 0 1 1 1 0 2 0 2 0 0 1 0 0 18 0 1771.8298 Q9H6R4;A0A0A0MRW6 Q9H6R4 12 29 NOL6 Nucleolar protein 6 yes no 2 1.2727E-05 61.375 By MS/MS 1 0.88783 0.91809 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88783 0.91809 NaN 1 1 Median NaN NaN NaN 0 0 Median 3387700 1862400 1525200 0 0 0 0 0 0 0 0 0 0 0 0 3387700 1862400 1525200 0 0 0 10475 3976 10901 51955 52051 52051 1 GATLALTQVTPQDER SEPGEYEQRLSLQDRGATLALTQVTPQDER GATLALTQVTPQDERIFLCQGKRPRSQEYR R G A E R I 2 1 0 1 0 2 1 1 0 0 2 0 0 0 1 0 3 0 0 1 0 0 15 0 1598.8264 P43121 P43121 98 112 MCAM Cell surface glycoprotein MUC18 yes yes 2 7.7852E-08 147.37 By MS/MS 1 0.9662 0.93223 NaN 1 Median 0.9662 0.93223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8083400 4206200 3877300 8083400 4206200 3877300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10476 2322 10902 51956 52052;52053 52053 2 GATLSHYNIVNNSNILGER PINIQFTSGTTGSPKGATLSHYNIVNNSNI SHYNIVNNSNILGERLKLHEKTPEQLRMIL K G A E R L 1 1 4 0 0 0 1 2 1 2 2 0 0 0 0 2 1 0 1 1 0 0 19 0 2071.0447 Q96CM8;E9PF16 Q96CM8 272 290 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial yes no 3 1.2103E-13 103.88 By MS/MS By matching By matching 1 1 1 1.161 1.1175 38.44 3 Median 0.66088 0.62585 NaN 1 0 Median 1.2969 1.1175 NaN 1 0 Median 1.161 1.295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20138000 11242000 8896200 15841000 9198300 6642800 1297200 469060 828180 2999500 1574300 1425200 0 0 0 0 0 0 0 0 0 10477 916 10903 51957;51958;51959 52054;52055 52054 2 GATPEGIFLR GLVRENYVWNVLLHRGATPEGIFLRVPTAS VLLHRGATPEGIFLRVPTASYDLDLFTMTW R G A L R V 1 1 0 0 0 0 1 2 0 1 1 0 0 1 1 0 1 0 0 0 0 0 10 0 1059.5713 Q92538 Q92538 907 916 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.037233 31.934 By MS/MS 1 1.1068 0.9364 NaN 1 Median NaN NaN NaN 0 0 Median 1.1068 0.9364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2690800 1208900 1481900 0 0 0 2690800 1208900 1481900 0 0 0 0 0 0 0 0 0 0 0 0 10478 3533 10904 51960 52056 52056 1 GATQQILDEAER FSGVALGEACTIVLRGATQQILDEAERSLH VLRGATQQILDEAERSLHDALCVLAQTVKD R G A E R S 2 1 0 1 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 12 0 1329.6525 P78371;F5GWF6;F8VQ14 P78371 377 388 CCT2 T-complex protein 1 subunit beta yes no 2 7.3144E-31 215.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1.0255 0.85635 59.306 7 Median 1.1013 1.0206 1.103 2 0 Median 1.0255 0.85635 NaN 1 0 Median 1.2255 1.2046 NaN 1 0 Median 0.73955 0.63194 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.47622 0.39543 91.483 2 2 Median 494130000 231660000 262460000 255250000 114870000 140380000 130280000 62043000 68238000 59435000 25209000 34225000 29299000 16793000 12506000 0 0 0 19863000 12750000 7113900 10479 2644 10905 51961;51962;51963;51964;51965;51966;51967 52057;52058;52059;52060;52061;52062;52063;52064;52065;52066;52067 52057 11 GATVLPANTPGNVGSGK EQLAKQHNHLERAFRGATVLPANTPGNVGS TVLPANTPGNVGSGKDQCCSGKGDMSDEDD R G A G K D 2 0 2 0 0 0 0 4 0 0 1 1 0 0 2 1 2 0 0 2 0 0 17 0 1538.8053 P22059 P22059 324 340 OSBP Oxysterol-binding protein 1 yes yes 2 0.00083016 55.04 By MS/MS 1 0.71874 0.62952 NaN 1 Median NaN NaN NaN 0 0 Median 0.71874 0.62952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3949800 2211900 1737900 0 0 0 3949800 2211900 1737900 0 0 0 0 0 0 0 0 0 0 0 0 10480 2096 10906 51968 52068 52068 1 GATYGKPVHHGVNQLK RIRVRRGGRKRPVPKGATYGKPVHHGVNQL ATYGKPVHHGVNQLKFARSLQSVAEERAGR K G A L K F 1 0 1 0 0 1 0 3 2 0 1 2 0 0 1 0 1 0 1 2 0 0 16 1 1704.906 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738 P61313 78 93 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 3;4 4.1108E-05 65.092 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 10 3 4 13 4 0.98396 0.95283 16.027 41 Median 0.88909 0.90731 9.234 7 0 Median 0.99814 0.91266 8.8052 10 0 Median 0.98486 0.98788 2.9009 3 0 Plateau 1.1566 1.086 6.8954 4 0 Median 0.95915 1.0565 20.957 13 0 Median 1.1505 0.99854 27.634 4 0 Median 104500000 50509000 53993000 17575000 8938700 8636500 21138000 10184000 10954000 5774500 2576800 3197700 6042600 2662700 3379900 49081000 23955000 25126000 4890700 2192300 2698400 10481 2555 10907 51969;51970;51971;51972;51973;51974;51975;51976;51977;51978;51979;51980;51981;51982;51983;51984;51985;51986;51987;51988;51989;51990;51991;51992;51993;51994;51995;51996;51997;51998;51999;52000;52001;52002;52003;52004;52005;52006;52007;52008;52009 52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081;52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098 52090 30 GAVAEDGDELR ______________________________ RGKKGAVAEDGDELRTEPEAKKSKTAAKKN K G A L R T 2 1 0 2 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1130.5204 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V2D9 G3V3M6 8 18 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.00065281 65.305 By matching By MS/MS By MS/MS 1 1 1 0.88996 0.80864 11.824 3 Median 0.78941 0.80864 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97198 0.96033 NaN 1 0 Median 0.88996 0.76563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7712400 3961200 3751200 718960 380750 338210 0 0 0 3458100 1723800 1734300 3535300 1856600 1678700 0 0 0 0 0 0 10482 1112 10908 52010;52011;52012 52099;52100;52101;52102 52099 4 GAVAEDGDELRTEPEAK ______________________________ VAEDGDELRTEPEAKKSKTAAKKNDKEAAG K G A A K K 3 1 0 2 0 0 4 2 0 0 1 1 0 0 1 0 1 0 0 1 0 0 17 1 1785.8381 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9 G3V3M6 8 24 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2;3 1.4524E-09 98.902 By matching By MS/MS By MS/MS By MS/MS 2 2 3 4 0.99269 0.86887 19.228 11 Median 0.69956 0.71855 18.224 2 0 Median 1.0956 1.014 13.15 2 0 Median 0.80416 0.86887 14.292 3 0 Median 1.0148 0.92055 19.724 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118280000 58028000 60256000 3930900 2295000 1635900 2087400 1042200 1045200 51180000 25928000 25252000 61086000 28763000 32324000 0 0 0 0 0 0 10483 1112 10909 52013;52014;52015;52016;52017;52018;52019;52020;52021;52022;52023 52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117 52105 15 GAVAEDGDELRTEPEAKK ______________________________ AEDGDELRTEPEAKKSKTAAKKNDKEAAGE K G A K K S 3 1 0 2 0 0 4 2 0 0 1 2 0 0 1 0 1 0 0 1 0 0 18 2 1913.933 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9 G3V3M6 8 25 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3;4 0.00010289 40.52 By matching By matching By matching By MS/MS 1 1 1 3 0.83391 0.87444 10.509 6 Median 0.76123 0.80595 NaN 1 0 Median 0.69734 0.83354 NaN 1 0 Median 0.76943 0.87137 NaN 1 0 Median 1.0105 1.0109 9.2419 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30102000 14728000 15374000 1093600 609040 484550 442600 243210 199390 11030000 5841900 5188100 17535000 8033400 9502000 0 0 0 0 0 0 10484 1112 10910 52024;52025;52026;52027;52028;52029 52118;52119;52120;52121;52122 52118 5 GAVAIADAIR QVEVINFGDCLVRSKGAVAIADAIRGGLPK LVRSKGAVAIADAIRGGLPKLKELNLSFCE K G A I R G 4 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 955.54508 P46060;H0Y4Q3 P46060 280 289 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.00038123 114.5 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 1.0295 0.90408 35.224 6 Median NaN NaN NaN 0 0 Median 1.0044 0.86856 NaN 1 0 Median 0.67768 0.6742 62.949 2 1 Median 1.1215 0.94081 15.706 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136990000 74423000 62565000 0 0 0 21040000 10465000 10575000 102410000 57572000 44841000 13535000 6386300 7148400 0 0 0 0 0 0 10485 2336 10911 52030;52031;52032;52033;52034;52035;52036 52123;52124;52125;52126;52127;52128;52129;52130;52131 52130 9 GAVAMAETLK LLRVINLNDNTFTEKGAVAMAETLKTLRQV TFTEKGAVAMAETLKTLRQVEVINFGDCLV K G A L K T 3 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 10 0 989.52157 P46060;H0Y4Q3 P46060 252 261 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.00038082 90.709 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 2 1.0554 0.93417 14.247 10 Median 1.2306 1.1158 NaN 1 0 Median 1.0516 0.90889 15.099 3 0 Median 1.1466 1.1237 13.554 2 1 Median 1.0592 0.9228 6.6792 3 1 Median NaN NaN NaN 0 0 Median 0.9879 0.82153 NaN 1 0 Median 114220000 51190000 63030000 11936000 4910200 7026100 28643000 13135000 15507000 57480000 25210000 32270000 12813000 6246000 6567000 0 0 0 3347200 1688400 1658800 10486 2336 10912 52037;52038;52039;52040;52041;52042;52043;52044;52045;52046;52047;52048;52049 52132;52133;52134;52135;52136;52137;52138;52139;52140;52141;52142;52143 52139 12 GAVDAAVPTNIIAAK ______________________________ GAVDAAVPTNIIAAKAAEVRANKVNWQSYL R G A A K A 5 0 1 1 0 0 0 1 0 2 0 1 0 0 1 0 1 0 0 2 0 0 15 0 1409.7878 Q9UI12;E5RK31;E5RJG1;E5RG49;E5RHH0 Q9UI12 8 22 ATP6V1H V-type proton ATPase subunit H yes no 2 0.00033399 50.648 By MS/MS By matching By matching By matching 1 2 1 1 0.82833 0.8185 46.137 5 Median 0.79914 0.73827 NaN 1 0 Median 0.87399 0.75671 13.502 2 0 Median 0.82833 0.8185 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1992 2.1202 NaN 1 0 Median NaN NaN NaN 0 0 Median 28736000 14948000 13788000 19165000 10216000 8948800 4580200 2278300 2301900 3962700 2148700 1814000 0 0 0 1028100 304750 723330 0 0 0 10487 4287 10913 52050;52051;52052;52053;52054 52144;52145 52144 2 GAVDALAAALAHISGASSFEPR VDFFRPSAQRLIEEKGAVDALAAALAHISG AALAHISGASSFEPRSLITSDKGFVTMTLE K G A P R S 7 1 0 1 0 0 1 2 1 1 2 0 0 1 1 3 0 0 0 1 0 0 22 0 2110.0807 Q9BQ39;A0A087WVC1 Q9BQ39 557 578 DDX50 ATP-dependent RNA helicase DDX50 yes no 2;3 2.9623E-14 92.935 By matching By MS/MS By MS/MS By MS/MS 1 3 3 2 0.93223 0.97993 11.78 9 Median 1.2624 1.2628 NaN 1 0 Median 1.185 1.0519 5.2796 3 0 Median 0.93223 0.9823 6.1701 3 0 Plateau NaN NaN NaN 0 0 Median 0.83186 0.87688 0.79415 2 0 Median NaN NaN NaN 0 0 Median 19481000 9289300 10191000 347180 138430 208750 9902800 4339800 5563000 2519000 1359500 1159500 0 0 0 6711600 3451600 3260100 0 0 0 10488 3781 10914 52055;52056;52057;52058;52059;52060;52061;52062;52063 52146;52147;52148;52149;52150;52151;52152;52153 52152 8 GAVDGGLSIPHSTK LARTTTGNKVFGALKGAVDGGLSIPHSTKR KGAVDGGLSIPHSTKRFPGYDSESKEFNAE K G A T K R 1 0 0 1 0 0 0 3 1 1 1 1 0 0 1 2 1 0 0 1 0 0 14 0 1337.6939 A0A2R8Y6J3;P46777;Q5T7N0 A0A2R8Y6J3 115 128 RPL5 60S ribosomal protein L5 yes no 2;3 7.4562E-26 154.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 2 6 2 2 0.97817 0.83504 25.921 20 Median 0.81089 0.81473 5.1165 5 4 Median 0.99692 0.84013 48.216 5 2 Median 0.97939 0.94386 1.1974 2 0 Median 1.125 0.93584 10.849 4 3 Linear 0.74666 0.74953 9.8659 2 2 Median 0.99405 0.81091 26.41 2 0 Median 870700000 448560000 422140000 378560000 200680000 177880000 200220000 101360000 98853000 52467000 25475000 26992000 145610000 70256000 75353000 85292000 46302000 38990000 8557000 4480600 4076400 10489 375 10915 52064;52065;52066;52067;52068;52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081;52082;52083;52084;52085 52154;52155;52156;52157;52158;52159;52160;52161;52162;52163;52164;52165;52166;52167;52168;52169;52170;52171;52172;52173;52174;52175;52176;52177;52178;52179;52180;52181;52182;52183;52184;52185;52186 52158 33 GAVDGGLSIPHSTKR LARTTTGNKVFGALKGAVDGGLSIPHSTKR GAVDGGLSIPHSTKRFPGYDSESKEFNAEV K G A K R F 1 1 0 1 0 0 0 3 1 1 1 1 0 0 1 2 1 0 0 1 0 0 15 1 1493.795 A0A2R8Y6J3;P46777;Q5T7N0 A0A2R8Y6J3 115 129 RPL5 60S ribosomal protein L5 yes no 2;3 2.9059E-09 96.103 By MS/MS By MS/MS By MS/MS 5 4 1 0.99321 0.93731 15.615 7 Median 0.98881 1.0091 8.8865 4 0 Median 0.88608 0.79725 21.417 2 1 Median NaN NaN NaN 0 0 Median 0.99321 0.93731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57598000 28624000 28975000 38632000 19695000 18937000 11897000 6041200 5855800 0 0 0 7069900 2887600 4182300 0 0 0 0 0 0 10490 375 10916 52086;52087;52088;52089;52090;52091;52092;52093;52094;52095 52187;52188;52189;52190;52191;52192;52193;52194;52195;52196;52197;52198;52199 52194 13 GAVEAAHQAFPGWAGQSPGAR NLHGYVAEGGAKDIRGAVEAAHQAFPGWAG HQAFPGWAGQSPGARAALLWALAAALERRK R G A A R A 6 1 0 0 0 2 1 4 1 0 0 0 0 1 2 1 0 1 0 1 0 0 21 0 2063.9926 Q8IZ83;F5H4B6 Q8IZ83 568 588 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 3 3.1989E-12 74.698 By MS/MS By matching 1 1 0.75903 0.6878 1.9455 2 Median 0.71718 0.6784 NaN 1 0 Median 0.80333 0.69733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18984000 10954000 8029800 16623000 9519700 7103200 2361000 1434300 926630 0 0 0 0 0 0 0 0 0 0 0 0 10491 3348 10917 52096;52097 52200;52201 52200 2 GAVEAELDPVEYTLR ______________________________ GAVEAELDPVEYTLRKRLPSRLPRRPNDIY R G A L R K 2 1 0 1 0 0 3 1 0 0 2 0 0 0 1 0 1 0 1 2 0 0 15 0 1660.8308 C9JYM0;O75817 C9JYM0 9 23 POP7 Ribonuclease P protein subunit p20 yes no 2 0.00014819 77.64 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0784 0.9241 5.0442 5 Median 0.9218 0.9252 NaN 1 0 Median 1.1014 0.9241 NaN 1 0 Median 0.88525 0.89811 NaN 1 0 Median 1.2026 0.9766 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0784 0.85034 NaN 1 0 Median 7682200 3985800 3696400 2207200 1053200 1153900 427990 200250 227740 4835300 2628900 2206300 127590 58624 68964 0 0 0 84178 44725 39453 10492 729 10918 52098;52099;52100;52101;52102 52202;52203;52204 52204 3 GAVEALAAALAHISGATSVDQR ISHFKQSAEKLIEEKGAVEALAAALAHISG AALAHISGATSVDQRSLINSNVGFVTMILQ K G A Q R S 7 1 0 1 0 1 1 2 1 1 2 0 0 0 0 2 1 0 0 2 0 0 22 0 2107.1022 Q9NR30 Q9NR30 606 627 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 5.0714E-27 155.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 5 4 1 1.2045 1.1638 18.02 18 Median 1.0093 1.0018 18.624 2 0 Median 1.1168 0.96965 16.819 6 0 Median 1.2563 1.3462 12.033 5 0 Median NaN NaN NaN 0 0 Median 1.243 1.2758 8.7801 4 0 Median 1.0463 0.88727 NaN 1 0 Median 62758000 27234000 35524000 2718800 1098300 1620400 24041000 11002000 13039000 23594000 9853400 13741000 0 0 0 12266000 5220900 7045400 137940 59581 78360 10493 4076 10919 52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120 52205;52206;52207;52208;52209;52210;52211;52212;52213;52214;52215;52216;52217;52218;52219;52220;52221;52222;52223 52222 19 GAVEDVISR TLKKTQPTVINNLKKGAVEDVISRNEIQGR INNLKKGAVEDVISRNEIQGRSAEEAYKQQ K G A S R N 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 9 0 944.49271 O15226 O15226 525 533 NKRF NF-kappa-B-repressing factor yes yes 2 0.0056277 57.047 By MS/MS 1 0.81918 0.87463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81918 0.87463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4908300 2794100 2114300 0 0 0 0 0 0 4908300 2794100 2114300 0 0 0 0 0 0 0 0 0 10494 1532 10920 52121 52224 52224 1 GAVGALLVYDIAK AGQERYRAITSAYYRGAVGALLVYDIAKHL YRGAVGALLVYDIAKHLTYENVERWLKELR R G A A K H 3 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1288.7391 H3BSC1;P62491;H3BMH2;Q15907 Q15907 83 95 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.0010336 60.434 By MS/MS By matching By matching By matching 1 2 1 1 1.2722 1.056 3.9722 5 Median 1.1417 1.0544 NaN 1 0 Median 1.279 1.1145 4.2673 2 0 Median 1.08 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2768 1.056 NaN 1 0 Median 62353000 29382000 32970000 52562000 25149000 27412000 2855900 1284300 1571600 1632400 751220 881150 0 0 0 0 0 0 5302900 2197700 3105200 10495 1233;2976 10921 52122;52123;52124;52125;52126 52225;52226;52227 52226 3 GAVGGTFDR PVAGSPKQPVRGYYRGAVGGTFDRLHNAHK VRGYYRGAVGGTFDRLHNAHKVLLSVACIL R G A D R L 1 1 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 878.42463 Q13057;K7EN91 Q13057 194 202 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.045126 32.32 By MS/MS 1 1.2087 1.0486 NaN 1 Median NaN NaN NaN 0 0 Median 1.2087 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3756400 1584200 2172100 0 0 0 3756400 1584200 2172100 0 0 0 0 0 0 0 0 0 0 0 0 10496 2783 10922 52127 52228 52228 1 GAVHDVKDVLDSVL KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ KGAVHDVKDVLDSVL_______________ K G A V L - 1 0 0 3 0 0 0 1 1 0 2 1 0 0 0 1 0 0 0 4 0 0 14 1 1465.7777 P81605 P81605 97 110 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 7.9604E-05 100.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 3 0.01617 0.013454 132.67 9 Median 0.034636 0.033974 6.225 2 2 Median 0.01617 0.013454 145.51 5 5 Median NaN NaN NaN 0 0 Median 0.0037692 0.0033024 40.371 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 409840000 404680000 5166700 18366000 17369000 997450 265920000 261910000 4014500 0 0 0 41659000 41505000 154780 83896000 83896000 0 0 0 0 10497 2650 10923 52128;52129;52130;52131;52132;52133;52134;52135;52136;52137;52138;52139 52229;52230;52231;52232;52233;52234;52235;52236;52237;52238;52239;52240;52241 52237 13 GAVIATELK HCNGVDWRQKLDSQRGAVIATELKNNSYKL KLDSQRGAVIATELKNNSYKLARWTCCALL R G A L K N 2 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 900.52803 O15371 O15371 418 426 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2 0.00086947 93.374 By MS/MS By MS/MS By matching By matching 1 2 2 2 1.2006 1.1026 7.2125 7 Median 1.0505 0.98488 NaN 1 0 Median 1.3701 1.1628 7.3081 2 0 Median 1.0676 1.1153 1.6183 2 0 Median 1.2037 1.0319 1.0601 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45947000 20046000 25901000 13419000 6202500 7216100 22002000 9680100 12322000 4377800 1669400 2708400 6149100 2493900 3655200 0 0 0 0 0 0 10498 1540 10924 52140;52141;52142;52143;52144;52145;52146 52242;52243;52244 52244 3 GAVIATELKNNSYK HCNGVDWRQKLDSQRGAVIATELKNNSYKL RGAVIATELKNNSYKLARWTCCALLAGSEY R G A Y K L 2 0 2 0 0 0 1 1 0 1 1 2 0 0 0 1 1 0 1 1 0 0 14 1 1506.8042 O15371 O15371 418 431 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2;3 3.4884E-07 112.83 By MS/MS By matching 2 1 1.1884 1.1156 34.052 3 Plateau 1.1492 1.0807 4.5048 2 0 Median 0.72853 0.60071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24344000 12301000 12043000 18077000 8636100 9441300 6266400 3665200 2601200 0 0 0 0 0 0 0 0 0 0 0 0 10499 1540 10925 52147;52148;52149 52245;52246;52247 52245 3 GAVIVVSHDAR IESIDALGEAINEYKGAVIVVSHDARLITE NEYKGAVIVVSHDARLITETNCQLWVVEEQ K G A A R L 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1122.6146 Q8NE71;H0YGW7;A0A0G2JIC2 Q8NE71 790 800 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.5963E-05 126.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 4 2 1.346 1.2245 22.521 10 Median 1.2417 1.2114 NaN 1 0 Median 1.7869 1.5185 0.4546 2 1 Median 1.4016 1.5014 NaN 1 0 Median 1.3206 1.1031 24.88 4 0 Median NaN NaN NaN 0 0 Median 1.204 0.98282 10.816 2 1 Median 40069000 16162000 23907000 2942200 1305200 1637000 18176000 6327300 11848000 2534600 1196100 1338400 14390000 6444500 7945100 0 0 0 2027300 889300 1138000 10500 3427 10926 52150;52151;52152;52153;52154;52155;52156;52157;52158;52159;52160 52248;52249;52250;52251;52252;52253;52254;52255;52256;52257;52258;52259;52260;52261 52252 14 GAVLAAVSSHK TVEQLRKFNARRKLKGAVLAAVSSHKFNSF RKLKGAVLAAVSSHKFNSFYGDPPEELPDF K G A H K F 3 0 0 0 0 0 0 1 1 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1038.5822 A0A2R8YEJ7;A0A2R8Y3B3;A0A2U3TZN6;A0A2U3TZM4;A0A2R8Y6F8;A0A2R8YFN5;A0A2U3TZM1;A0A2R8YE77;A0A2R8YEK3;O14936 A0A2R8YEJ7 121 131 CASK Peripheral plasma membrane protein CASK yes no 2 0.0024672 53.327 By MS/MS 1 0.86401 0.89827 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86401 0.89827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1136700 620550 516120 0 0 0 0 0 0 1136700 620550 516120 0 0 0 0 0 0 0 0 0 10501 356 10927 52161 52262 52262 1 GAVLAQGQGDGTVSK AGGAERPGPMGEAEKGAVLAQGQGDGTVSK GAVLAQGQGDGTVSKGGRGPGSQHTKEAED K G A S K G 2 0 0 1 0 2 0 4 0 0 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1386.7103 P48382;F8W689 P48382 527 541 RFX5 DNA-binding protein RFX5 yes no 2 0.00033583 55.401 By MS/MS By matching 1 1 1.0359 0.98918 5.6843 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96855 1.0297 NaN 1 0 Median 1.108 0.95021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4156000 2063400 2092600 0 0 0 0 0 0 3798400 1916700 1881600 357640 146660 210980 0 0 0 0 0 0 10502 2360 10928 52162;52163 52263;52264 52263 2 GAVSAEQVIAGFNR NSGRAGKSSGSGAGKGAVSAEQVIAGFNRL KGAVSAEQVIAGFNRLRQEQRGLASKAAEL K G A N R L 3 1 1 0 0 1 1 2 0 1 0 0 0 1 0 1 0 0 0 2 0 0 14 0 1417.7314 Q9UHV9 Q9UHV9 19 32 PFDN2 Prefoldin subunit 2 yes yes 2;3 4.7388E-08 159.4 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.2411 1.1332 8.8097 8 Median 1.2175 1.1428 4.1711 3 0 Median 1.2962 1.084 0.66312 2 0 Median 1.268 1.2857 4.4545 2 0 Median 1.2258 1.0105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109130000 47837000 61290000 95919000 42191000 53728000 6881300 2867100 4014200 5612000 2426600 3185400 713990 352070 361920 0 0 0 0 0 0 10503 4284 10929 52164;52165;52166;52167;52168;52169;52170;52171 52265;52266;52267;52268;52269;52270;52271;52272;52273 52270 9 GAVTDDEVIR ______________________________ ______________________________ M G A I R K 1 1 0 2 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 10 0 1073.5353 Q6I9Y2 Q6I9Y2 2 11 THOC7 THO complex subunit 7 homolog yes yes 2 0.00039592 79.474 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.98534 0.90139 14.244 4 Median 1.0521 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90076 0.86461 NaN 1 0 Median 1.1352 0.93975 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92285 0.74343 NaN 1 0 Median 81918000 35914000 46004000 6694700 3152200 3542500 0 0 0 68905000 30036000 38870000 2053400 578460 1474900 0 0 0 4265000 2147800 2117300 10504 3136 10930 52172;52173;52174;52175 52274;52275;52276 52275 3 GAVTDDEVIRK ______________________________ ______________________________ M G A R K R 1 1 0 2 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 1 1201.6303 Q6I9Y2 Q6I9Y2 2 12 THOC7 THO complex subunit 7 homolog yes yes 2 0.0001144 93.551 By MS/MS 1 0.84083 0.88132 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84083 0.88132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15039000 8532400 6507000 0 0 0 0 0 0 15039000 8532400 6507000 0 0 0 0 0 0 0 0 0 10505 3136 10931 52176 52277;52278 52277 2 GAVVDQLGGDLNSTPLHWAIR AINNRLDLVKFYISKGAVVDQLGGDLNSTP LGGDLNSTPLHWAIRQGHLPMVILLLQHGA K G A I R Q 2 1 1 2 0 1 0 3 1 1 3 0 0 0 1 1 1 1 0 2 0 0 21 0 2218.1495 Q8IUH4 Q8IUH4 105 125 ZDHHC13 Palmitoyltransferase ZDHHC13 yes yes 3 4.9554E-09 55.763 By MS/MS 1 1.1604 0.96318 NaN 1 Median NaN NaN NaN 0 0 Median 1.1604 0.96318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6864200 2923300 3940900 0 0 0 6864200 2923300 3940900 0 0 0 0 0 0 0 0 0 0 0 0 10506 3315 10932 52177 52279;52280 52279 2 GAVVPPVHDIYR AVKRPNEDSDEDEEKGAVVPPVHDIYRARQ EEKGAVVPPVHDIYRARQQKRIR_______ K G A Y R A 1 1 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 0 1 3 0 0 12 0 1321.7143 Q12996;E9PLP8;H0YE74 Q12996 698 709 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.00016879 66.267 By MS/MS By MS/MS 1 2 0.82212 0.76716 0.31591 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76088 0.76887 NaN 1 0 Median 0.88828 0.76545 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27610000 14970000 12640000 0 0 0 0 0 0 24925000 13492000 11433000 2685600 1478400 1207200 0 0 0 0 0 0 10507 2777 10933 52178;52179;52180 52281;52282;52283;52284 52282 4 GAVVVLNMVEASR LQALLLSSNQELQHRGAVVVLNMVEASREI HRGAVVVLNMVEASREIASTLMESEMMEIL R G A S R E 2 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 4 0 0 13 0 1343.7231 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 1022 1034 UNC45A Protein unc-45 homolog A yes no 2 0.00018752 81.865 By MS/MS By MS/MS 1 1 1.127 1.0396 7.6022 2 Median 1.1184 1.097 NaN 1 0 Median 1.1357 0.98518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5051200 2235000 2816200 2523100 1075700 1447400 2528100 1159300 1368800 0 0 0 0 0 0 0 0 0 0 0 0 10508 335 10934 52181;52182 52285;52286;52287 52285 3 GAVWGATLNK QGDTGDWIGTFLGHKGAVWGATLNKDATKA FLGHKGAVWGATLNKDATKAATAAADFTAK K G A N K D 2 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 1 0 0 10 0 1015.5451 Q9Y3F4 Q9Y3F4 60 69 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 0.0010001 69.423 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2539 1.0638 14.64 5 Median 1.2946 1.1961 NaN 1 0 Median 1.2357 1.0525 NaN 1 0 Median 1.1132 1.1083 27.502 2 0 Median 1.2539 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60931000 25846000 35085000 17178000 7107900 10070000 26538000 11419000 15119000 12739000 5391000 7348300 4475500 1928000 2547500 0 0 0 0 0 0 10509 4429 10935 52183;52184;52185;52186;52187 52288;52289;52290;52291;52292 52290 5 GAVYSFDPVGSYQR YYVYNIIGGLDEEGKGAVYSFDPVGSYQRD KGAVYSFDPVGSYQRDSFKAGGSASAMLQP K G A Q R D 1 1 0 1 0 1 0 2 0 0 0 0 0 1 1 2 0 0 2 2 0 0 14 0 1544.726 P20618 P20618 147 160 PSMB1 Proteasome subunit beta type-1 yes yes 2 3.2026E-05 133.81 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 0.87684 0.86595 21.972 8 Plateau 0.9075 0.88533 6.4893 2 0 Median 0.94404 0.79815 20.094 2 0 Median 0.90862 0.87288 NaN 1 0 Median 0.96793 0.80188 NaN 1 0 Median 0.75386 0.75544 NaN 1 0 Median 0.60338 0.47464 NaN 1 0 Median 156680000 78873000 77806000 121350000 61501000 59849000 10325000 4987000 5337900 15081000 7473900 7607400 2625200 1264000 1361200 7003300 3472800 3530500 295000 174780 120220 10510 2081 10936 52188;52189;52190;52191;52192;52193;52194;52195 52293;52294;52295;52296;52297;52298;52299;52300;52301;52302 52293 10 GAVYSMVEFNGK YSDGKLQTVAEKEVKGAVYSMVEFNGKLLA EVKGAVYSMVEFNGKLLASINSTVRLYEWT K G A G K L 1 0 1 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 1 2 0 0 12 0 1300.6122 Q16531;F5GY55 Q16531 868 879 DDB1 DNA damage-binding protein 1 yes no 2 5.325E-06 115.71 By matching By matching By MS/MS By MS/MS 1 1 3 2 1.1136 1.1161 36.447 7 Median 1.1197 1.1161 NaN 1 0 Median 0.69928 0.60708 NaN 1 0 Median 0.90336 0.98427 12.049 3 1 Median 2.0109 1.7282 4.4717 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40304000 19769000 20535000 6146400 3863600 2282800 789840 425200 364640 26091000 13093000 12999000 7276300 2387300 4889000 0 0 0 0 0 0 10511 2985 10937;10938 52196;52197;52198;52199;52200;52201;52202 52303;52304;52305;52306;52307 52307 1637 5 GAWSNVLR WRKIFRDEGGKAFFKGAWSNVLRGMGGAFV GGKAFFKGAWSNVLRGMGGAFVLVLYDELK K G A L R G 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 8 0 901.477 P05141;P12235;P12236 P12236 273 280 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00086645 132.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 8 3 1 1 2 1.4713 1.2387 16.059 20 Median 1.229 1.1438 9.1526 6 1 Linear 1.5329 1.2966 13.982 7 1 Median 1.2137 1.1826 14.14 3 0 Median 1.5366 1.2817 NaN 1 0 Median 1.4598 1.4717 NaN 1 0 Median 1.5424 1.2487 0.69247 2 0 Median 560920000 243860000 317050000 343640000 157330000 186310000 169980000 67465000 102520000 23334000 9442900 13891000 1978800 789340 1189400 19313000 7853300 11460000 2672000 983010 1689000 10512 1977;1861;1976 10939 52203;52204;52205;52206;52207;52208;52209;52210;52211;52212;52213;52214;52215;52216;52217;52218;52219;52220;52221;52222;52223;52224 52308;52309;52310;52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322;52323;52324;52325;52326;52327;52328;52329;52330;52331;52332 52310 25 GAYDIFLNAK FQKDILIACRLNQKKGAYDIFLNAKEQNIV LNQKKGAYDIFLNAKEQNIVFNAETYSNLI K G A A K E 2 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1110.571 P42704 P42704 1050 1059 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00066494 96.19 By MS/MS By matching By MS/MS 1 1 1 1.3071 1.2636 11.098 3 Median 1.1755 1.1337 NaN 1 0 Median 1.4887 1.2636 NaN 1 0 Median 1.3071 1.4154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28976000 12537000 16439000 19153000 8806700 10347000 6652700 2598200 4054500 3170200 1132200 2038000 0 0 0 0 0 0 0 0 0 10513 2315 10940 52225;52226;52227 52333;52334;52335 52334 3 GAYGGGYGGYDDYGGYNDGYGFGSDR YNSIGRGAGFERMRRGAYGGGYGGYDDYGG DYGGYNDGYGFGSDRFGRDLNYCFSGMSDH R G A D R F 1 1 1 4 0 0 0 11 0 0 0 0 0 1 0 1 0 0 6 0 0 0 26 0 2659.016 P55795 P55795 234 259 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2;3 1.8685E-36 114.91 By MS/MS By MS/MS 2 2 0.88081 0.87679 13.776 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88081 0.87679 4.2498 2 0 Median NaN NaN NaN 0 0 Median 0.9385 0.94499 22.252 2 0 Median NaN NaN NaN 0 0 Median 17838000 9264300 8573400 0 0 0 0 0 0 14968000 7893200 7074600 0 0 0 2869900 1371100 1498800 0 0 0 10514 2502 10941 52228;52229;52230;52231 52336;52337;52338;52339 52337 4 GAYGGGYGGYDDYNGYNDGYGFGSDR YNSIGRGAGFERMRRGAYGGGYGGYDDYNG DYNGYNDGYGFGSDRFGRDLNYCFSGMSDH R G A D R F 1 1 2 4 0 0 0 10 0 0 0 0 0 1 0 1 0 0 6 0 0 0 26 0 2716.0375 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 234 259 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 7.9713E-47 154.82 By MS/MS By matching By MS/MS 2 1 2 1.0039 1.0086 17.564 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90631 0.89077 6.0218 2 0 Median 1.5605 1.3603 NaN 1 0 Median 1.0062 1.0117 0.43401 2 0 Median NaN NaN NaN 0 0 Median 45673000 22346000 23327000 0 0 0 0 0 0 34964000 16956000 18009000 441730 207110 234620 10267000 5183600 5083200 0 0 0 10515 1136 10942 52232;52233;52234;52235;52236 52340;52341;52342;52343;52344;52345 52342 6 GAYIYNALIEFIR FFHELSPGSCFFLPKGAYIYNALIEFIRSE PKGAYIYNALIEFIRSEYRKRGFQEVVTPN K G A I R S 2 1 1 0 0 0 1 1 0 3 1 0 0 1 0 0 0 0 2 0 0 0 13 0 1541.8242 P26639 P26639 349 361 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0014451 53.683 By MS/MS By matching By matching 1 3 1 1.1911 1.1658 4.8465 5 Median 1.1911 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.205 1.2169 6.1025 3 0 Median NaN NaN NaN 0 0 Median 1.1175 1.1658 NaN 1 0 Median NaN NaN NaN 0 0 Median 8019900 3624900 4395000 6648600 2974000 3674600 0 0 0 1115900 534990 580930 0 0 0 255370 115920 139450 0 0 0 10516 2147 10943 52237;52238;52239;52240;52241 52346;52347 52346 2 GAYLNALK TRNNFLPNADMETRRGAYLNALKIAKLLLT ADMETRRGAYLNALKIAKLLLTAIGYGHVR R G A L K I 2 0 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 848.4756 Q93008;O00507 Q93008 1146 1153 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0062714 71.949 By MS/MS 1 1.0415 0.91212 NaN 1 Median NaN NaN NaN 0 0 Median 1.0415 0.91212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6540300 3448200 3092000 0 0 0 6540300 3448200 3092000 0 0 0 0 0 0 0 0 0 0 0 0 10517 3573 10944 52242 52348 52348 1 GAYQDRDKPAQIR PRSGATAGAAGGRGKGAYQDRDKPAQIRFS GKGAYQDRDKPAQIRFSNISAAKAVADAIR K G A I R F 2 2 0 2 0 2 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 13 2 1516.7746 P50991 P50991 22 34 CCT4 T-complex protein 1 subunit delta yes yes 3 0.059945 14.353 By MS/MS 2 0.92757 0.9832 2.3966 2 Median 0.92757 0.9832 2.3966 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4429300 2065800 2363500 4429300 2065800 2363500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10518 2424 10945 52243;52244 52349 52349 1 GCDVVVIPAGVPR VKGYLGPEQLPDCLKGCDVVVIPAGVPRKP LKGCDVVVIPAGVPRKPGMTRDDLFNTNAT K G C P R K 1 1 0 1 1 0 0 2 0 1 0 0 0 0 2 0 0 0 0 4 0 0 13 0 1337.7126 P40926 P40926 92 104 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 0.00026336 79.148 By MS/MS By matching 1 1 0.63394 0.60701 15.931 2 Median 0.58055 0.54234 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69224 0.67939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11265000 6177200 5087900 8726600 4569100 4157500 0 0 0 2538400 1608000 930400 0 0 0 0 0 0 0 0 0 10519 2292 10946 52245;52246 52350 52350 1 GCEVVVSGK ACYGVLRFIMESGAKGCEVVVSGKLRGQRA MESGAKGCEVVVSGKLRGQRAKSMKFVDGL K G C G K L 0 0 0 0 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 3 0 0 9 0 933.45897 P23396;E9PL09;H0YEU2;E9PSF4 P23396 133 141 RPS3 40S ribosomal protein S3 no no 2 0.018899 40.352 By MS/MS 1 1.2982 1.0972 NaN 1 Median NaN NaN NaN 0 0 Median 1.2982 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1488800 685550 803260 0 0 0 1488800 685550 803260 0 0 0 0 0 0 0 0 0 0 0 0 10520 2112 10947 52247 52351;52352 52351 2 GCGTVLLSGPR GKILTFDQLALDSPKGCGTVLLSGPRKGRE DSPKGCGTVLLSGPRKGREVYRHFGKAPGT K G C P R K 0 1 0 0 1 0 0 3 0 0 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1115.5757 J3QQ67;Q07020;G3V203;H0YHA7;F8VUA6 J3QQ67 135 145 RPL18 60S ribosomal protein L18 yes no 2 0.0011096 82.749 By MS/MS 1 0.44151 0.37352 NaN 1 Median NaN NaN NaN 0 0 Median 0.44151 0.37352 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23609000 16121000 7488500 0 0 0 23609000 16121000 7488500 0 0 0 0 0 0 0 0 0 0 0 0 10521 1342 10948 52248 52353 52353 1 GCGVVKFESPEVAER HVLYADIKMENGKSKGCGVVKFESPEVAER GCGVVKFESPEVAERACRMMNGMKLSGREI K G C E R A 1 1 0 0 1 0 3 2 0 0 0 1 0 1 1 1 0 0 0 3 0 0 15 1 1662.8036 A0A087X0X3;P52272 A0A087X0X3 693 707 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 0.00011067 68.355 By MS/MS 3 0.6771 0.73291 5.2139 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6771 0.73291 5.2139 3 0 Median NaN NaN NaN 0 0 Median 20745000 11666000 9079500 0 0 0 0 0 0 0 0 0 0 0 0 20745000 11666000 9079500 0 0 0 10522 116 10949 52249;52250;52251 52354;52355 52354 2 GCTATLGNFAK LLMMAGIDDCYTSARGCTATLGNFAKATFD TSARGCTATLGNFAKATFDAISKTYSYLTP R G C A K A 2 0 1 0 1 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 11 0 1138.5441 P15880;H0YEN5;E9PQD7 P15880 228 238 RPS2 40S ribosomal protein S2 yes no 2 0.00018493 110.41 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1205 0.92851 22.775 5 Median 0.99193 0.90515 NaN 1 0 Median 1.1717 0.97579 7.0241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3976 1.4772 NaN 1 0 Median 1.007 0.81961 NaN 1 0 Median 60947000 27296000 33651000 16934000 8667400 8266500 42660000 18067000 24593000 0 0 0 0 0 0 1033100 413830 619230 320020 147360 172660 10523 2020 10950 52252;52253;52254;52255;52256 52356;52357;52358;52359 52358 4 GCTDNLTLTVAR NTSNMTHLEAQNRIKGCTDNLTLTVARSEH RIKGCTDNLTLTVARSEHKVWSPLVTEEGK K G C A R S 1 1 1 1 1 0 0 1 0 0 2 0 0 0 0 0 3 0 0 1 0 0 12 0 1319.6503 O00151 O00151 72 83 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 0.053644 25.386 By MS/MS 2 0.94203 0.95516 28.928 2 Median NaN NaN NaN 0 0 Median 0.94203 0.95516 28.928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1739700 810450 929280 0 0 0 1739700 810450 929280 0 0 0 0 0 0 0 0 0 0 0 0 10524 1442 10951 52257;52258 52360 52360 1 GCVTIAIHAKPGSK ERPLPPLGPVAVDPKGCVTIAIHAKPGSKQ KGCVTIAIHAKPGSKQNAVTDLTAEAVNVA K G C S K Q 2 0 0 0 1 0 0 2 1 2 0 2 0 0 1 1 1 0 0 1 0 0 14 1 1437.7762 Q8WUR7;H0Y996;H3BMR1 Q8WUR7 61 74 C15orf40 UPF0235 protein C15orf40 yes no 3 0.037194 18.096 By MS/MS 1 0.81196 0.83343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81196 0.83343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1149800 713210 436560 0 0 0 0 0 0 1149800 713210 436560 0 0 0 0 0 0 0 0 0 10525 3495 10952 52259 52361 52361 1 GDAALQAQPGVAGAPPVLHSIK AQELRTLATCAAGSRGDAALQAQPGVAGAP QPGVAGAPPVLHSIKQEPVAEGHEKRLDIL R G D I K Q 5 0 0 1 0 2 0 3 1 1 2 1 0 0 3 1 0 0 0 2 0 0 22 0 2096.1378 Q92618;A0A087WUJ4 Q92618 1022 1043 ZNF516 Zinc finger protein 516 yes no 3 0.00012209 32.702 By MS/MS 1 0.68032 0.7369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68032 0.7369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3399800 1805100 1594800 0 0 0 0 0 0 3399800 1805100 1594800 0 0 0 0 0 0 0 0 0 10526 3545 10953 52260 52362 52362 1 GDAAVRDELMAAVR RIAQLRFLLSLPEHRGDAAVRDELMAAVRD RGDAAVRDELMAAVRDNNMAPYYEALCKSL R G D V R D 4 2 0 2 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 14 1 1472.7406 Q15008;C9J7B7 Q15008 33 46 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2;3 1.9477E-08 148.52 By MS/MS By matching By MS/MS By matching 5 2 2 2 1.0974 1.1547 13.337 11 Median 1.0734 1.1547 9.7054 5 0 Median 1.0913 1.021 15.077 2 0 Median 1.2407 1.2717 12.589 2 0 Median 1.2653 1.1138 22.62 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105320000 47634000 57690000 88660000 40883000 47776000 4376800 2117500 2259400 11628000 4335600 7292900 658980 297750 361230 0 0 0 0 0 0 10527 2911 10954 52261;52262;52263;52264;52265;52266;52267;52268;52269;52270;52271 52363;52364;52365;52366;52367;52368;52369;52370 52365 8 GDADQASNILASFGLSAR NIGSRGPLPLSSQHRGDADQASNILASFGL DQASNILASFGLSARDLDELSRYPEDKITP R G D A R D 4 1 1 2 0 1 0 2 0 1 2 0 0 1 0 3 0 0 0 0 0 0 18 0 1791.8751 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 103 120 MATR3 Matrin-3 yes no 2;3 3.7072E-108 265.13 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 10 4 7 10 1.1346 1.0295 16.19 33 Median 1.5113 1.5076 7.9468 2 0 Median 1.1666 1.0234 NaN 1 0 Median 1.1618 0.99587 16.987 10 0 Linear 1.3575 1.1445 4.0059 4 0 Median 1.029 1.0454 13.39 6 1 Median 1.1879 1.0052 8.0746 10 0 Median 131760000 64454000 67304000 1935700 765090 1170600 280270 130140 150140 53647000 26495000 27152000 2818400 1229700 1588700 57227000 28382000 28845000 15850000 7453000 8397500 10528 297 10955 52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283;52284;52285;52286;52287;52288;52289;52290;52291;52292;52293;52294;52295;52296;52297;52298;52299;52300;52301;52302;52303;52304;52305 52371;52372;52373;52374;52375;52376;52377;52378;52379;52380;52381;52382;52383;52384;52385;52386;52387;52388;52389;52390;52391;52392;52393;52394;52395;52396;52397;52398 52381 28 GDAHLRPTSLVQR DLTRTFPSGGEEEAKGDAHLRPTSLVQRRF AKGDAHLRPTSLVQRRFSEGVLQSPSQDQE K G D Q R R 1 2 0 1 0 1 0 1 1 0 2 0 0 0 1 1 1 0 0 1 0 0 13 1 1448.7848 Q9C0C2 Q9C0C2 414 426 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 3 0.03709 29.912 By MS/MS 1 0.67791 0.68458 NaN 1 Median NaN NaN NaN 0 0 Median 0.67791 0.68458 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2289500 1483000 806440 0 0 0 2289500 1483000 806440 0 0 0 0 0 0 0 0 0 0 0 0 10529 3903 10956 52306 52399 52399 1 GDAMIMEETGK EASSSGVSVLSLCEKGDAMIMEETGKIFKK LCEKGDAMIMEETGKIFKKEKEMKKGIAFP K G D G K I 1 0 0 1 0 0 2 2 0 1 0 1 2 0 0 0 1 0 0 0 0 0 11 0 1180.5104 Q9UQ80;F8VR77;H0YIN7;F8W0A3 Q9UQ80 52 62 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00015911 114.5 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 1.0532 0.99771 8.8138 14 Median 1.0064 0.99027 4.3415 3 0 Median 1.1567 0.9823 15.668 4 0 Median 1.0188 1.0198 4.4588 4 1 Median 1.0773 0.97423 6.7066 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 193870000 88765000 105100000 15838000 8027400 7810400 36154000 15538000 20616000 49496000 21394000 28102000 92381000 43807000 48574000 0 0 0 0 0 0 10530 4360 10957;10958 52307;52308;52309;52310;52311;52312;52313;52314;52315;52316;52317;52318;52319;52320 52400;52401;52402;52403;52404;52405;52406;52407;52408;52409;52410;52411;52412 52406 1936;1937 13 GDANSEVTVYYQSGTR LPSGHHLCKVKALNKGDANSEVTVYYQSGT DANSEVTVYYQSGTRSLREYTLMELLVMHM K G D T R S 1 1 1 1 0 1 1 2 0 0 0 0 0 0 0 2 2 0 2 2 0 0 16 0 1745.7857 O43847;G3V1R5;H0Y5G9 O43847 914 929 NRD1 Nardilysin yes no 2 6.2338E-06 85.845 By MS/MS By matching 1 1 1.1674 1.0615 23.959 2 Median 1.3005 1.2575 NaN 1 0 Median 1.048 0.89611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7274000 2826600 4447500 4715000 1874500 2840500 2559000 952020 1607000 0 0 0 0 0 0 0 0 0 0 0 0 10531 1597 10959 52321;52322 52413 52413 1 GDASKEDIDTAMK LLVPYLMEAIRLYERGDASKEDIDTAMKLG ERGDASKEDIDTAMKLGAGYPMGPFELLDY R G D M K L 2 0 0 3 0 0 1 1 0 1 0 2 1 0 0 1 1 0 0 0 0 0 13 1 1379.6239 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A1W2PQ78 A0A0D9SFP2 241 253 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2;3 0.00039535 80.706 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.3955 1.3091 21.111 6 Median 1.2134 1.1851 7.7886 2 0 Median 1.5799 1.4235 5.5754 2 0 Median 0.83197 0.87836 NaN 1 0 Median 1.7793 1.5624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15303000 6453600 8849300 8760300 3984300 4776000 5068200 1801700 3266500 575180 319000 256180 899200 348570 550630 0 0 0 0 0 0 10532 269 10960 52323;52324;52325;52326;52327;52328 52414;52415;52416;52417;52418;52419;52420;52421 52417 8 GDATVSYEDPPTAK PMIHIYLDKETGKPKGDATVSYEDPPTAKA KGDATVSYEDPPTAKAAVEWFDGKDFQGSK K G D A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 0 2 1 2 0 1 1 0 0 14 0 1449.6624 B0QYK0;Q01844;H7BY36;A0A0D9SFL3;C9JGE3 B0QYK0 373 386 EWSR1 RNA-binding protein EWS yes no 2 8.2179E-05 83.397 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 4 1 1 0.91999 0.7836 25.632 13 Median 0.76852 0.71573 30.541 2 0 Median 0.90743 0.77059 11.656 3 0 Median 0.87428 0.90644 59.871 2 0 Median 0.92638 0.81799 15.874 4 0 Median 1.1044 1.1347 NaN 1 1 Median 1.1657 0.96857 NaN 1 0 Median 66464000 34146000 32318000 13176000 7565000 5610700 10185000 5210000 4974800 17849000 9857300 7992100 17271000 8190200 9080900 6973300 2938300 4035000 1010000 385730 624310 10533 557 10961 52329;52330;52331;52332;52333;52334;52335;52336;52337;52338;52339;52340;52341 52422;52423;52424;52425;52426;52427;52428;52429;52430;52431;52432;52433;52434 52431 13 GDAVRDVDIIDHHDNTYTVK AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY K G D V K Y 1 1 1 5 0 0 0 1 2 2 0 1 0 0 0 0 2 0 1 3 0 0 20 1 2282.0927 P21333;Q60FE5;A0A087WWY3 P21333 917 936 FLNA Filamin-A no no 3;4 1.0052E-09 85.35 By MS/MS 4 1.1906 1.2322 5.3678 4 Linear 1.1906 1.2322 5.3678 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107690000 47241000 60453000 107690000 47241000 60453000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10534 2088;3120 10962 52342;52343;52344;52345 52435;52436;52437;52438;52439;52440;52441;52442;52443 52437 9 GDDLLPAGTEDYIHIR IQNLHSFDPFADASKGDDLLPAGTEDYIHI DDLLPAGTEDYIHIRIQQRNGRKTLTTVQG K G D I R I 1 1 0 3 0 0 1 2 1 2 2 0 0 0 1 0 1 0 1 0 0 0 16 0 1783.8741 K7EM18;P41567;O60739 K7EM18 19 34 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 3 3.6543E-05 55.755 By MS/MS 1 0.72183 0.72989 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72183 0.72989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23213000 11819000 11394000 0 0 0 0 0 0 23213000 11819000 11394000 0 0 0 0 0 0 0 0 0 10535 1380 10963 52346 52444;52445 52444 2 GDDLQAIKK SKSGQRGSSKSGKLKGDDLQAIKKELTQIK KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K G D K K E 1 0 0 2 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 9 1 986.53966 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7 B2R5W2 177 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 0.010008 52.716 By matching By matching By MS/MS 1 1 1 1.0598 1.1157 15.425 3 Median 1.2455 1.2866 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82049 0.94534 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0598 1.1157 NaN 1 0 Median NaN NaN NaN 0 0 Median 4385600 2005500 2380200 498790 250300 248490 0 0 0 489380 276410 212970 0 0 0 3397500 1478800 1918700 0 0 0 10536 582 10964 52347;52348;52349 52446 52446 1 GDDLSTAILK ______________________________ GADSKGDDLSTAILKQKNRPNRLIVDEAIN K G D L K Q 1 0 0 2 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1031.5499 P55072 P55072 9 18 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0065663 63.419 By MS/MS By MS/MS By matching 1 2 1 1.3683 1.2494 86.307 4 Median 1.1554 1.1013 NaN 1 0 Median 1.6946 1.502 8.2046 2 1 Median 0.2165 0.2478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23637000 9336900 14300000 4044300 1772000 2272200 17329000 5957200 11372000 2263500 1607700 655780 0 0 0 0 0 0 0 0 0 10537 2494 10965 52350;52351;52352;52353 52447;52448 52448 2 GDDQLELIKDDEK AEEGDLLDDDDNEDRGDDQLELIKDDEKEA DRGDDQLELIKDDEKEAEEGEDDRDSANGG R G D E K E 0 0 0 4 0 1 2 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 13 1 1516.7257 B2R5W2;G3V4C1;P07910;G3V2Q1;G3V2D6;G3V5V7 B2R5W2 263 275 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 0.0081815 27.969 By MS/MS By matching 1 1 1.1242 1.0631 30.036 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.255 1.3147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0071 0.85971 NaN 1 0 Median 4941900 2009200 2932800 0 0 0 0 0 0 4153000 1637900 2515100 0 0 0 0 0 0 788980 371320 417660 10538 582 10966 52354;52355 52449 52449 1 GDDQLSGAQQWMTK KRNRGREEINFVEIKGDDQLSGAQQWMTKS KGDDQLSGAQQWMTKSLTEEKTMKSFSKKK K G D T K S 1 0 0 2 0 3 0 2 0 0 1 1 1 0 0 1 1 1 0 0 0 0 14 0 1563.6988 Q92733;H0YE12;H0Y679 Q92733 415 428 PRCC Proline-rich protein PRCC yes no 2 0.00031289 73.632 By MS/MS By matching 1 1 1.0945 1.0084 7.649 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96768 0.95527 NaN 1 0 Median 1.2378 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8409800 4099600 4310100 0 0 0 0 0 0 7549100 3711100 3838000 860710 388570 472150 0 0 0 0 0 0 10539 3550 10967 52356;52357 52450;52451 52451 2 GDDSEWLKLPVDQK ______________________________ MGDDSEWLKLPVDQKCEHKLWKARLSGYEE M G D Q K C 0 0 0 3 0 1 1 1 0 0 2 2 0 0 1 1 0 1 0 1 0 0 14 1 1628.8046 Q14008;E9PQH5 Q14008 2 15 CKAP5 Cytoskeleton-associated protein 5 yes no 2 1.139E-07 113.93 By MS/MS By MS/MS By matching By matching 2 1 1 2 1.0103 1.0241 28.429 6 Median 0.72871 0.7142 28.915 2 0 Median NaN NaN NaN 0 0 Median 0.94047 1.0867 NaN 1 0 Median 1.1392 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3118 1.1591 22.251 2 0 Median 12810000 6628100 6182400 5276300 2904600 2371700 0 0 0 6820600 3408800 3411700 268920 145070 123850 0 0 0 444700 169610 275090 10540 2850 10968 52358;52359;52360;52361;52362;52363 52452;52453;52454;52455 52454 4 GDDTPLHLAASHGHR EMLIMRGARINVMNRGDDTPLHLAASHGHR GDDTPLHLAASHGHRDIVQKLLQYKADINA R G D H R D 2 1 0 2 0 0 0 2 3 0 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1582.7601 Q13418;A0A0A0MTH3;A0A087WWY6 Q13418 66 80 ILK Integrin-linked protein kinase yes no 3 0.00022887 45.54 By matching By MS/MS By MS/MS 1 1 2 0.9504 0.83502 3.2348 4 Median NaN NaN NaN 0 0 Median 0.99509 0.86807 NaN 1 0 Median 0.83246 0.82466 NaN 1 0 Median 0.9504 0.8251 3.4539 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12381000 6570300 5810400 0 0 0 825370 333140 492230 8262700 4511000 3751700 3292700 1726200 1566500 0 0 0 0 0 0 10541 190 10969 52364;52365;52366;52367 52456;52457;52458;52459;52460 52459 5 GDDYFNYNVQQTSTNPPLPEPGYFTKPPIAAHASR ALRFESPATGILSPRGDDYFNYNVQQTSTN PGYFTKPPIAAHASRSAESKTIEFGKTNFV R G D S R S 3 1 3 2 0 2 1 2 1 1 1 1 0 2 6 2 3 0 3 1 0 0 35 1 3891.8493 P49792 P49792 958 992 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 4 4.4357E-05 36.978 By MS/MS 2 0.38258 0.4459 25.838 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38258 0.4459 25.838 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20737000 17143000 3593200 0 0 0 0 0 0 20737000 17143000 3593200 0 0 0 0 0 0 0 0 0 10542 2401 10970 52368;52369 52461;52462 52461 2 GDECGLALGR AKRIVVKLGSAVVTRGDECGLALGRLASIV AVVTRGDECGLALGRLASIVEQVSVLQNQG R G D G R L 1 1 0 1 1 0 1 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1046.4815 P54886 P54886 85 94 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.002391 60.436 By MS/MS By matching 1 1 0.94627 0.91064 3.2663 2 Median NaN NaN NaN 0 0 Median 1.0748 0.93191 NaN 1 0 Median 0.83312 0.88984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4955500 2028200 2927300 0 0 0 2668700 1045000 1623800 2286800 983250 1303500 0 0 0 0 0 0 0 0 0 10543 2488 10971 52370;52371 52463;52464 52463 2 GDEELDSLIK KVKRITPRHLQLAIRGDEELDSLIKATIAG QLAIRGDEELDSLIKATIAGGGVIPHIHKS R G D I K A 0 0 0 2 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1117.5503 Q71UI9;P0C0S5;C9J0D1;A0A494C189;C9J386 Q71UI9 93 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 2 0.00039724 99.136 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 3 1.1451 1.0219 29.847 8 Median NaN NaN NaN 0 0 Median 0.54173 0.46635 NaN 1 1 Median 1.105 1.0518 NaN 1 0 Median 1.1867 0.98752 NaN 1 0 Median 0.90223 0.97526 2.5232 2 0 Median 1.4271 1.1336 2.7276 3 0 Plateau 421940000 188530000 233410000 0 0 0 2724200 1993100 731110 23658000 10010000 13648000 300480 133270 167210 167670000 85351000 82321000 227590000 91043000 136540000 10544 1925 10972 52372;52373;52374;52375;52376;52377;52378;52379 52465;52466;52467;52468;52469;52470;52471;52472;52473;52474;52475;52476;52477;52478 52467 14 GDEMDAMIPER ______________________________ ______________________________ M G D E R E 1 1 0 2 0 0 2 1 0 1 0 0 2 0 1 0 0 0 0 0 0 0 11 0 1262.5271 A0A494C1F2;P35658 A0A494C1F2 2 12 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.031014 56.729 By MS/MS 1 0.89217 0.99087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89217 0.99087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1494700 829790 664880 0 0 0 0 0 0 1494700 829790 664880 0 0 0 0 0 0 0 0 0 10545 467 10973 52380 52479 52479 0 GDEVDGVDEVAK LKKQLPGVKSEGKRKGDEVDGVDEVAKKKS KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K G D A K K 1 0 0 3 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 3 0 0 12 0 1231.5568 P09874 P09874 210 221 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 2.2292E-10 111.06 By matching By MS/MS By MS/MS 1 2 2 1.0538 1.0452 8.0877 4 Median 1.0368 1.0083 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98702 1.0767 12.712 2 1 Median 1.2469 1.0834 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18381000 8597100 9784400 5007300 2221500 2785800 0 0 0 6554000 3532200 3021800 6820100 2843400 3976700 0 0 0 0 0 0 10546 1922 10974 52381;52382;52383;52384;52385 52480;52481;52482;52483 52483 4 GDEVIFGEFSWPK VLRQYNIQKKEIVVKGDEVIFGEFSWPKNV VKGDEVIFGEFSWPKNVKTNYVVWGTGKEG K G D P K N 0 0 0 1 0 0 2 2 0 1 0 1 0 2 1 1 0 1 0 1 0 0 13 0 1509.714 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640;A0A3B3ISN2 Q6P1J9 22 34 CDC73 Parafibromin yes no 2 0.040448 25.938 By MS/MS 1 0.83141 0.85523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83141 0.85523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1911400 1049100 862330 0 0 0 0 0 0 1911400 1049100 862330 0 0 0 0 0 0 0 0 0 10547 3150 10975 52386 52484 52484 1 GDFCIQVGR LGETNPADSKPGTIRGDFCIQVGRTMANLE KPGTIRGDFCIQVGRTMANLERTFIAIKPD R G D G R T 0 1 0 1 1 1 0 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 9 0 1050.4917 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;O60361 Q32Q12 131 139 NME1;NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 2 0.00055902 114.43 By MS/MS By MS/MS By MS/MS 1 2 1 1.3339 1.1539 8.5796 4 Median 1.2163 1.1575 NaN 1 0 Median 1.3574 1.1407 1.2 2 0 Median 1.343 1.3593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192450000 80956000 111490000 37109000 16518000 20591000 139920000 57669000 82254000 15414000 6769900 8643800 0 0 0 0 0 0 0 0 0 10548 3008;2018 10976 52387;52388;52389;52390 52485;52486;52487;52488;52489;52490;52491;52492 52489 8 GDFDENLNYPEQK YDYLKTLAGDVHIVRGDFDENLNYPEQKVV VRGDFDENLNYPEQKVVTVGQFKIGLIHGH R G D Q K V 0 0 2 2 0 1 2 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 13 0 1567.6791 F8VXU5;Q9UBQ0 F8VXU5 93 105 VPS29 Vacuolar protein sorting-associated protein 29 yes no 2 0.0039666 42.336 By MS/MS By MS/MS By MS/MS 2 2 1 0.89002 0.78045 8.766 5 Median 0.81292 0.76285 3.2258 2 0 Median 0.97242 0.83626 13.399 2 0 Median 0.89791 0.85171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24179000 12807000 11371000 17290000 9294600 7995200 2827800 1330200 1497600 4061000 2182600 1878400 0 0 0 0 0 0 0 0 0 10549 1073 10977 52391;52392;52393;52394;52395 52493;52494;52495;52496;52497 52494 5 GDFDVSVPK SIPDVDLDLKGPKVKGDFDVSVPKVEGTLK KGPKVKGDFDVSVPKVEGTLKGPEVDLKGP K G D P K V 0 0 0 2 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 2 0 0 9 0 962.47091 Q09666 Q09666 4865 4873 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.017046 42.075 By MS/MS By MS/MS 1 2 1.0727 1.143 9.4386 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0957 1.1717 NaN 1 0 Median 1.0656 1.0058 4.7807 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18507000 8200600 10307000 0 0 0 0 0 0 10769000 4667400 6101200 7738900 3533300 4205600 0 0 0 0 0 0 10550 2749 10978 52396;52397;52398 52498;52499;52500;52501 52499 4 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK DRPMHVKMDERALPKGDFFPPERPQQLPHG LGPGGQPIDANHLNKGIGMGNIGPAGMGME K G D N K G 1 1 2 2 0 3 1 9 2 2 4 1 1 2 6 0 0 0 0 0 0 0 37 1 3817.9111 A0A087X0X3;P52272;M0R019;M0R0N3;M0QZM1 A0A087X0X3 286 322 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 4;5 6.5869E-10 39.687 By matching By matching By MS/MS By MS/MS 2 1 2 3 0.34126 0.37546 35.24 8 Median 0.5926 0.60573 46.375 2 0 Median 0.32634 0.30518 NaN 1 0 Median 0.28775 0.31333 4.4644 2 1 Median NaN NaN NaN 0 0 Median 0.34522 0.37981 23.463 3 0 Median NaN NaN NaN 0 0 Median 61279000 44869000 16409000 4903000 2851500 2051500 203300 129780 73521 14878000 12019000 2858100 0 0 0 41295000 29869000 11426000 0 0 0 10551 116;1423 10979 52399;52400;52401;52402;52403;52404;52405;52406 52502;52503;52504 52503 3 GDFIALDLGGSSFR MLPTFVRSIPDGSEKGDFIALDLGGSSFRI KGDFIALDLGGSSFRILRVQVNHEKNQNVH K G D F R I 1 1 0 2 0 0 0 3 0 1 2 0 0 2 0 2 0 0 0 0 0 0 14 0 1453.7201 P19367;B1AR62 P19367 78 91 HK1 Hexokinase-1 yes no 2 0.0004518 69.979 By MS/MS By MS/MS 1 2 1.5778 1.3637 21.976 3 Plateau 0.92811 0.89748 NaN 1 0 Median 1.3544 1.1586 23.044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15060000 6834300 8225800 4005300 1956800 2048500 11055000 4877500 6177200 0 0 0 0 0 0 0 0 0 0 0 0 10552 2064 10980 52407;52408;52409 52505;52506;52507;52508;52509 52507 5 GDFILVGDLMR CNHYNNIMALYLKTKGDFILVGDLMRSVLL LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K G D M R S 0 1 0 2 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 1 0 0 11 0 1234.638 Q16531;F5GY55 Q16531 918 928 DDB1 DNA damage-binding protein 1 yes no 2 0.042268 27.115 By matching By matching By MS/MS 2 2 1 1.0757 1.0432 19.761 5 Median 0.96857 0.97342 9.7876 2 0 Median 1.1936 1.0286 13.561 2 0 Median NaN NaN NaN 0 0 Median 1.7303 1.4862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6591100 2863900 3727200 2678000 1245100 1432900 3332800 1396900 1935900 0 0 0 580310 221920 358400 0 0 0 0 0 0 10553 2985 10981 52410;52411;52412;52413;52414 52510 52510 1 GDFIPGLR TSVERAAASTDYYKRGDFIPGLRVDGMDIL STDYYKRGDFIPGLRVDGMDILCVREATRF R G D L R V 0 1 0 1 0 0 0 2 0 1 1 0 0 1 1 0 0 0 0 0 0 0 8 0 873.47085 P08559 P08559 246 253 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes yes 2 0.026977 41.502 By MS/MS By matching By matching By matching 1 1 1 1 1.0735 1.0242 12.792 4 Median 0.86835 0.86348 NaN 1 0 Median 1.2396 1.0904 NaN 1 0 Median 0.92969 0.96205 NaN 1 0 Median 1.3617 1.1475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10230000 5427000 4802800 8609400 4646100 3963300 610360 296220 314140 754070 392520 361550 255920 92120 163800 0 0 0 0 0 0 10554 1902 10982 52415;52416;52417;52418 52511 52511 1 GDFITIGSR EDFLNICIEPDTISKGDFITIGSRKVRNPK PDTISKGDFITIGSRKVRNPKLHVEGTECL K G D S R K 0 1 0 1 0 0 0 2 0 2 0 0 0 1 0 1 1 0 0 0 0 0 9 0 964.49779 E9PC15;A0A3B3ITD0;Q53H12;A0A3B3ISY9;A0A0G2JLG5 E9PC15 315 323 AGK Acylglycerol kinase, mitochondrial yes no 2 0.0017261 78.334 By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 1.1291 0.99765 34.229 7 Median 1.0306 0.99765 NaN 1 0 Median 1.1292 0.96879 1.3032 2 0 Median 1.1847 1.2669 3.0394 2 1 Median NaN NaN NaN 0 0 Median 1.3218 1.331 NaN 1 0 Median 0.46396 0.49092 NaN 1 0 Median 23854000 11816000 12038000 7412800 3715600 3697100 9077900 4552100 4525800 5308200 2532900 2775300 0 0 0 1645600 716220 929380 409330 299110 110220 10555 435 10983 52419;52420;52421;52422;52423;52424;52425 52512;52513 52512 2 GDFLALDLGGTNFR MLPTYVCATPDGTEKGDFLALDLGGTNFRV KGDFLALDLGGTNFRVLLVRVRNGKWGGVE K G D F R V 1 1 1 2 0 0 0 3 0 0 3 0 0 2 0 0 1 0 0 0 0 0 14 0 1494.7467 E9PB90;P52789;P52790 E9PB90 498 511 HK2;HK3 Hexokinase;Hexokinase-2;Hexokinase-3 yes no 2 0.00085939 57.836 By MS/MS 1 1.4545 1.259 NaN 1 Median NaN NaN NaN 0 0 Median 1.4545 1.259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5066300 2160600 2905800 0 0 0 5066300 2160600 2905800 0 0 0 0 0 0 0 0 0 0 0 0 10556 908 10984 52426 52514 52514 1 GDFSVHISR IGHTDSAEAAPGTIRGDFSVHISRNVIHAS APGTIRGDFSVHISRNVIHASDSVEGAQRE R G D S R N 0 1 0 1 0 0 0 1 1 1 0 0 0 1 0 2 0 0 0 1 0 0 9 0 1016.5039 Q4TT34;F2Z2X0;O00746;A0A087WVT9 Q4TT34 147 155 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2 0.00073077 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99008 0.90772 35.695 4 Median 0.61453 0.59817 NaN 1 0 Median 1.5738 1.3054 NaN 1 0 Median 0.73589 0.74597 NaN 1 0 Median 1.3321 1.1045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26583000 14208000 12376000 9659800 5882800 3777000 4986900 1923300 3063700 8425400 4801900 3623500 3511300 1599600 1911600 0 0 0 0 0 0 10557 992 10985 52427;52428;52429;52430 52515;52516;52517;52518;52519;52520;52521;52522 52518 8 GDFSYIGNLMTK LSYIQSIPVVNEEHRGDFSYIGNLMTKEFI EHRGDFSYIGNLMTKEFIGQQLILIIKSLD R G D T K E 0 0 1 1 0 0 0 2 0 1 1 1 1 1 0 1 1 0 1 0 0 0 12 0 1344.6384 Q9BPX3 Q9BPX3 387 398 NCAPG Condensin complex subunit 3 yes yes 2 0.017419 33.961 By MS/MS By MS/MS 2 1 1.1479 0.9673 10.625 3 Plateau 1.0449 1.0473 11.244 2 0 Median 1.0828 0.92698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5390100 2494200 2895900 4149800 1858400 2291400 1240300 635840 604470 0 0 0 0 0 0 0 0 0 0 0 0 10558 3778 10986 52431;52432;52433 52523;52524;52525 52524 3 GDFYTAHGEDALLAAR GMPEKPTTTVRLFDRGDFYTAHGEDALLAA DFYTAHGEDALLAAREVFKTQGVIKYMGPA R G D A R E 4 1 0 2 0 0 1 2 1 0 2 0 0 1 0 0 1 0 1 0 0 0 16 0 1705.806 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 40 55 MSH2 DNA mismatch repair protein Msh2 yes no 2;3 2.8535E-05 70.281 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1.1802 1.0605 17.187 7 Median 1.1802 1.1379 NaN 1 0 Median 1.2461 1.0605 NaN 1 0 Median 0.90793 0.95856 NaN 1 0 Median 1.3019 1.1048 2.3576 2 0 Median NaN NaN NaN 0 0 Median 0.95407 0.76782 0.87084 2 0 Median 69859000 34193000 35666000 9058700 4547500 4511200 3492000 1516100 1975900 43389000 22100000 21289000 13109000 5704100 7405000 0 0 0 810490 325560 484940 10559 2324 10987 52434;52435;52436;52437;52438;52439;52440 52526;52527;52528;52529;52530;52531;52532;52533;52534;52535 52529 10 GDGEVLEEIVTK RKVVDPETGRTRLIKGDGEVLEEIVTKERH LIKGDGEVLEEIVTKERHREINK_______ K G D T K E 0 0 0 1 0 0 3 2 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1287.6558 F5GYV5;H7BZV4;A0A0C4DG62;F8WCT1;Q66PJ3;F8WEP2;A0A0C4DH18 F5GYV5 192 203 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes no 2 0.0058604 39.918 By MS/MS By matching 1 2 1.2997 1.2423 34.98 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2997 1.2423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83216 0.78833 32.68 2 0 Median 4022300 1775300 2247000 0 0 0 0 0 0 2797000 1187700 1609400 0 0 0 0 0 0 1225300 587600 637660 10560 235 10988 52441;52442;52443 52536 52536 1 GDGNVLIAVDTAGR QRDEQLLTNVLETLRGDGNVLIAVDTAGRV RGDGNVLIAVDTAGRVLELAQLLDQIWRTK R G D G R V 2 1 1 2 0 0 0 3 0 1 1 0 0 0 0 0 1 0 0 2 0 0 14 0 1356.6997 Q9P2I0 Q9P2I0 229 242 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.00083691 58.674 By MS/MS By matching 1 1 1.0565 1.0412 24.371 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4353 1.237 NaN 1 0 Median 0.77766 0.87635 NaN 1 0 Median NaN NaN NaN 0 0 Median 10442000 4723500 5718900 0 0 0 0 0 0 0 0 0 5969700 2468000 3501600 4472800 2255500 2217300 0 0 0 10561 4223 10989 52444;52445 52537;52538 52538 2 GDGPICLVLAPTR LPAIVHINHQPFLERGDGPICLVLAPTREL ERGDGPICLVLAPTRELAQQVQQVAAEYCR R G D T R E 1 1 0 1 1 0 0 2 0 1 2 0 0 0 2 0 1 0 0 1 0 0 13 0 1367.7231 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3KRZ1;J3QRQ7 J3KTA4 165 177 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00043641 73.499 By matching By matching By MS/MS By MS/MS By matching 2 1 1 2 2 0.78359 0.78166 13.789 8 Median 0.76283 0.75846 1.4409 2 0 Median 0.92632 0.80206 NaN 1 0 Median 0.72177 0.73289 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80183 0.81233 2.6224 2 1 Median 0.84095 0.71445 33.396 2 0 Median 38817000 20354000 18463000 2227000 1164900 1062100 2195200 1014000 1181300 14920000 7854400 7065400 0 0 0 18001000 9700900 8299800 1474100 619510 854580 10562 1334;343 10990 52446;52447;52448;52449;52450;52451;52452;52453 52539;52540;52541;52542;52543;52544 52541 6 GDGPVQGIINFEQK ______________________________ KGDGPVQGIINFEQKESNGPVKVWGSIKGL K G D Q K E 0 0 1 1 0 2 1 3 0 2 0 1 0 1 1 0 0 0 0 1 0 0 14 0 1500.7573 P00441 P00441 11 24 SOD1 Superoxide dismutase [Cu-Zn] yes yes 2;3 2.2446E-07 122.69 By MS/MS By MS/MS By MS/MS 2 1 2 0.93957 0.88053 14.876 5 Median 1.0742 1.0091 24.03 2 0 Median 1.0345 0.88432 NaN 1 0 Median 0.90496 0.85572 4.042 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 241040000 117830000 123210000 195720000 96579000 99142000 16232000 7676800 8555100 29085000 13574000 15512000 0 0 0 0 0 0 0 0 0 10563 1820 10991 52454;52455;52456;52457;52458 52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556 52547 12 GDGSPSPEYTLFR AGWVREGDTVQLLCRGDGSPSPEYTLFRLQ CRGDGSPSPEYTLFRLQDEQEEVLNVNLEG R G D F R L 0 1 0 1 0 0 1 2 0 0 1 0 0 1 2 2 1 0 1 0 0 0 13 0 1424.6572 P50895;A0A087WXM8;K7ENU8 P50895 293 305 BCAM Basal cell adhesion molecule yes no 2 0.016072 48.741 By MS/MS 1 0.62582 0.60775 NaN 1 Median 0.62582 0.60775 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3344600 1833700 1510900 3344600 1833700 1510900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10564 68 10992 52459 52557 52557 1 GDGVTPPAGTAAPAPPPLSQDVPGR CGEDASEAQEVTIPRGDGVTPPAGTAAPAP AAPAPPPLSQDVPGRADTSQPSARMRGHGE R G D G R A 4 1 0 2 0 1 0 4 0 0 1 0 0 0 7 1 2 0 0 2 0 0 25 0 2324.1761 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 517 541 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.014096 29.733 By MS/MS 1 0.24645 0.26997 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24645 0.26997 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2405700 1999100 406620 0 0 0 0 0 0 2405700 1999100 406620 0 0 0 0 0 0 0 0 0 10565 277 10993 52460 52558 52558 1 GDGVVLVAPPLR IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ FVRGDGVVLVAPPLRVG_____________ R G D L R V 1 1 0 1 0 0 0 2 0 0 2 0 0 0 2 0 0 0 0 3 0 0 12 0 1191.6976 P62310 P62310 89 100 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 5.367E-06 99.442 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1 0.85636 0.77026 9.5979 11 Median 0.84769 0.82345 8.5485 2 0 Median 0.96876 0.80468 14.809 2 0 Median 0.72108 0.72819 7.9432 2 0 Median 0.95679 0.75298 1.8963 2 0 Median 0.74998 0.79169 0.95619 2 0 Median 0.85636 0.6389 NaN 1 0 Median 279860000 154750000 125110000 83144000 45746000 37397000 32454000 16316000 16138000 94033000 53858000 40175000 10065000 5090500 4974500 44676000 24761000 19915000 15492000 8980300 6511600 10566 2583 10994 52461;52462;52463;52464;52465;52466;52467;52468;52469;52470;52471 52559;52560;52561;52562;52563;52564;52565;52566;52567;52568;52569;52570;52571;52572;52573;52574;52575;52576;52577;52578;52579;52580;52581;52582 52566 24 GDGVVLVAPPLRVG IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ RGDGVVLVAPPLRVG_______________ R G D V G - 1 1 0 1 0 0 0 3 0 0 2 0 0 0 2 0 0 0 0 4 0 0 14 1 1347.7874 P62310 P62310 89 102 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 0.0043543 55.567 By MS/MS By MS/MS 1 1 0.89295 0.9092 12.722 2 Median 0.85178 0.83098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93612 0.99478 NaN 1 0 Median NaN NaN NaN 0 0 Median 5059600 2633200 2426400 3328700 1695400 1633300 0 0 0 0 0 0 0 0 0 1730900 937830 793080 0 0 0 10567 2583 10995 52472;52473 52583;52584;52585 52583 3 GDHAWSFLK ______________________________ ______________________________ M G D L K D 1 0 0 1 0 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 9 0 1059.5138 P12235;V9GYG0 P12235 2 10 SLC25A4 ADP/ATP translocase 1 yes no 2 0.0016401 79.713 By MS/MS By matching By matching 2 3 1 1.1235 1.0832 24.503 6 Median 1.1235 1.0832 7.59 2 0 Median 1.5643 1.3686 37.233 3 0 Plateau 0.96279 0.93676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33796000 15576000 18220000 25623000 12118000 13505000 6889500 2883300 4006100 1283600 574690 708880 0 0 0 0 0 0 0 0 0 10568 1976 10996 52474;52475;52476;52477;52478;52479 52586;52587;52588;52589 52587 4 GDHEFTDYMIR TDSDVNLVVPLEVIKGDHEFTDYMIRSNES EVIKGDHEFTDYMIRSNESHCSLQIKALAK K G D I R S 0 1 0 2 0 0 1 1 1 1 0 0 1 1 0 0 1 0 1 0 0 0 11 0 1382.5925 Q8N1G2 Q8N1G2 488 498 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2;3 0.00059752 66.435 By matching By matching By MS/MS By matching 1 1 2 1 1.1665 1.2262 21.082 5 Median 0.78886 0.79198 NaN 1 0 Median 1.4265 1.2959 NaN 1 0 Median 1.0262 1.0973 17.869 2 0 Median 1.4843 1.2262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11213000 5611700 5601300 1260200 698190 561980 810070 327660 482410 9004400 4534900 4469500 138360 50932 87429 0 0 0 0 0 0 10569 3358 10997 52480;52481;52482;52483;52484 52590;52591;52592 52590 3 GDHVIGIVTAK VYWVDSQQKRYVPVKGDHVIGIVTAKSGDI VPVKGDHVIGIVTAKSGDIFKVDVGGSEPA K G D A K S 1 0 0 1 0 0 0 2 1 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1108.6241 Q9NQT5 Q9NQT5 114 124 EXOSC3 Exosome complex component RRP40 yes yes 2 0.00015771 93.111 By MS/MS By MS/MS 1 1 1.1974 1.0781 10.443 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0424 1.0013 NaN 1 0 Median 1.3754 1.1607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8925100 4113100 4812000 0 0 0 0 0 0 6747800 3178100 3569600 2177300 934920 1242400 0 0 0 0 0 0 10570 4067 10998 52485;52486 52593;52594;52595;52596 52596 4 GDIIGVQGNPGK KSEEEFIHINNKLRRGDIIGVQGNPGKTKK LRRGDIIGVQGNPGKTKKGELSIIPYEITL R G D G K T 0 0 1 1 0 1 0 4 0 2 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1153.6091 Q15046;H3BVA8;J3KRL2;H3BPV7 Q15046 179 190 KARS Lysine--tRNA ligase yes no 2 0.0060743 66.299 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10571 2919 10999 52487 52597 52597 1 GDIIQLQR EELMLGDPCLKDLKKGDIIQLQRRGFFICD CLKDLKKGDIIQLQRRGFFICDQPYEPVSP K G D Q R R 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 941.52943 P07814;V9GYZ6 P07814 667 674 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0071131 68.422 By matching By MS/MS 1 2 1.2704 1.1453 40.805 3 Plateau 1.1865 1.1535 NaN 1 0 Median 0.94421 0.8058 49.724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9762200 4745700 5016500 3663500 1811000 1852500 6098700 2934700 3164000 0 0 0 0 0 0 0 0 0 0 0 0 10572 1892 11000 52488;52489;52490 52598 52598 1 GDINILLIGDPSVAK LGGVERDLENGSHIRGDINILLIGDPSVAK GDINILLIGDPSVAKSQLLRYVLCTAPRAI R G D A K S 1 0 1 2 0 0 0 2 0 3 2 1 0 0 1 1 0 0 0 1 0 0 15 0 1523.8559 P25205;J3KQ69;A0A499FHX9 P25205 337 351 MCM3 DNA replication licensing factor MCM3 yes no 2 0.00018344 75.479 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.83267 0.84316 16.126 7 Median 0.77958 0.77364 12.17 2 0 Median 1.1439 0.99705 12.461 2 0 Median 0.758 0.83304 NaN 1 0 Median 1.0767 0.95483 NaN 1 0 Median 0.67228 0.69054 NaN 1 0 Median NaN NaN NaN 0 0 Median 29361000 14930000 14431000 7494800 4388800 3106100 14505000 6405800 8099100 6437100 3601700 2835400 249900 128510 121380 674450 405270 269180 0 0 0 10573 2129 11001 52491;52492;52493;52494;52495;52496;52497 52599;52600;52601;52602;52603;52604;52605 52603 7 GDINLLMLGDPGTAK FGGSRKRLPDGLTRRGDINLLMLGDPGTAK GDINLLMLGDPGTAKSQLLKFVEKCSPIGV R G D A K S 1 0 1 2 0 0 0 3 0 1 3 1 1 0 1 0 1 0 0 0 0 0 15 0 1513.781 P33992;B1AHB1 P33992 373 387 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.027983 38.402 By MS/MS 1 0.68114 0.67217 NaN 1 Median 0.68114 0.67217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1930400 1151700 778700 1930400 1151700 778700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10574 2224 11002 52498 52606 52606 1 GDIQPWLHSGSNSLLSK DLVKCFTLIIQSLQRGDIQPWLHSGSNSLL IQPWLHSGSNSLLSKLIHQSYHGTMDTVSL R G D S K L 0 0 1 1 0 1 0 2 1 1 3 1 0 0 1 4 0 1 0 0 0 0 17 0 1837.9323 Q9H900 Q9H900 380 396 ZWILCH Protein zwilch homolog yes yes 3 0.014637 20.65 By MS/MS By matching 1 1 0.87413 0.80929 43.166 2 Median 0.62023 0.59641 NaN 1 0 Median 1.232 1.0982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718500 2109800 1608800 3330200 1912700 1417400 388390 197010 191380 0 0 0 0 0 0 0 0 0 0 0 0 10575 3992 11003 52499;52500 52607 52607 1 GDISISGPK GAKGEGPDVHMTLPKGDISISGPKVNVEAP HMTLPKGDISISGPKVNVEAPDVNLEGLGG K G D P K V 0 0 0 1 0 0 0 2 0 2 0 1 0 0 1 2 0 0 0 0 0 0 9 0 872.46035 Q09666 Q09666 655 663 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.015962 43.083 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.94336 0.90659 13.418 4 Median 1.0557 1.0456 NaN 1 0 Median 1.005 0.87615 NaN 1 0 Median 0.85534 0.93808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88548 0.75889 NaN 1 0 Median 8563200 4356200 4207000 1462900 785820 677120 3853400 1837800 2015600 1826000 952300 873730 0 0 0 0 0 0 1420800 780350 640470 10576 2749 11004 52501;52502;52503;52504 52608;52609 52608 2 GDKDGSLEVTGQLGEVMK FVETSLRRPQDKDAKGDKDGSLEVTGQLGE DGSLEVTGQLGEVMKESARIAYTFARAFLM K G D M K E 0 0 0 2 0 1 2 4 0 0 2 2 1 0 0 1 1 0 0 2 0 0 18 1 1861.9091 K7EKE6;P36776;K7EJE8;K7ERR6 K7EKE6 680 697 LONP1 Lon protease homolog, mitochondrial yes no 3 0.068468 8.8192 By matching By MS/MS By matching 1 2 1 1.3819 1.3907 38.522 4 Median NaN NaN NaN 0 0 Median 1.466 1.3749 NaN 1 0 Median 1.7818 2.0094 50.434 2 0 Median 1.3026 1.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10466000 4284300 6181700 0 0 0 1265200 450010 815240 8260300 3473600 4786700 940370 360640 579730 0 0 0 0 0 0 10577 1370 11005 52505;52506;52507;52508 52610 52610 1 GDKEEVAYEER LFGSVETWPWQVLSKGDKEEVAYEERACEG VLSKGDKEEVAYEERACEGGKFATVEVTDK K G D E R A 1 1 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 11 1 1323.5943 Q9NRV9;F5GWX2 Q9NRV9 24 34 HEBP1 Heme-binding protein 1 yes no 3 0.011111 29.807 By MS/MS 1 0.85227 0.89666 NaN 1 Median 0.85227 0.89666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 907710 418790 488920 907710 418790 488920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10578 4088 11006 52509 52611;52612 52612 2 GDKVDILYNNIK SLEAHVNGFRFTSVRGDKVDILYNNIKHAL SVRGDKVDILYNNIKHALFQPCDGEMIIVL R G D I K H 0 0 2 2 0 0 0 1 0 2 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1390.7456 Q9Y5B9 Q9Y5B9 694 705 SUPT16H FACT complex subunit SPT16 yes yes 2;3 2.4237E-05 100.58 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 4 4 1.1719 1.1283 18.668 12 Median 0.80528 0.83681 24.334 2 1 Median 1.1107 0.98066 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4434 1.375 NaN 1 0 Median 1.1055 1.1853 12.745 4 0 Median 1.2547 1.1283 5.3007 4 0 Median 36618000 17381000 19237000 8163900 4650000 3513800 2925300 1805200 1120100 0 0 0 1682000 685390 996560 19020000 8184700 10835000 4826700 2055400 2771400 10579 4456 11007 52510;52511;52512;52513;52514;52515;52516;52517;52518;52519;52520;52521 52613;52614;52615;52616;52617;52618;52619 52615 7 GDLAYNYR SEFGVRGYPTIKLLKGDLAYNYRGPRTKDD PTIKLLKGDLAYNYRGPRTKDDIIEFAHRV K G D Y R G 1 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 8 0 970.45084 Q96JJ7 Q96JJ7 107 114 TMX3 Protein disulfide-isomerase TMX3 yes yes 2 0.031575 58.981 By MS/MS 1 1.8274 1.5625 NaN 1 Median NaN NaN NaN 0 0 Median 1.8274 1.5625 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3072400 1121300 1951100 0 0 0 3072400 1121300 1951100 0 0 0 0 0 0 0 0 0 0 0 0 10580 3685 11008 52522 52620 52620 1 GDLDASVPSMK SGPDLDLNLKGPSLKGDLDASVPSMKVHAP PSLKGDLDASVPSMKVHAPGLNLSGVGGKM K G D M K V 1 0 0 2 0 0 0 1 0 0 1 1 1 0 1 2 0 0 0 1 0 0 11 0 1118.5278 Q09666 Q09666 5313 5323 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00016143 109.66 By matching By MS/MS By MS/MS 1 1 2 0.89924 0.89505 23.466 4 Median 0.76603 0.75923 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0465 1.1188 NaN 1 0 Median 0.90488 0.85856 29.16 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28372000 14073000 14299000 2707400 1407700 1299700 0 0 0 11636000 5685300 5950600 14028000 6979900 7048600 0 0 0 0 0 0 10581 2749 11009 52523;52524;52525;52526 52621;52622;52623;52624;52625;52626;52627 52626 7 GDLGAFSR SLASQFSDCSSAKARGDLGAFSRGQMQKPF CSSAKARGDLGAFSRGQMQKPFEDASFALR R G D S R G 1 1 0 1 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 821.40317 Q13526;K7EMU7;K7EN45 Q13526 120 127 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 2 0.0038087 85.212 By MS/MS By matching By MS/MS 2 2 1 1.1361 1.0109 9.322 5 Median NaN NaN NaN 0 0 Median 1.1504 0.96298 0.50083 2 0 Median 1.0358 1.0217 1.508 2 0 Median 1.4602 1.2077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31289000 13750000 17539000 0 0 0 5270300 2156800 3113500 24477000 11051000 13426000 1541500 542380 999160 0 0 0 0 0 0 10582 2822 11010 52527;52528;52529;52530;52531 52628;52629 52628 2 GDLGIEIPAEK FDEILEASDGIMVARGDLGIEIPAEKVFLA MVARGDLGIEIPAEKVFLAQKMMIGRCNRA R G D E K V 1 0 0 1 0 0 2 2 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1140.6027 H3BTN5;P14618;B4DNK4 P14618 295 305 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00013591 88.496 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 1 1 0.98497 0.78894 56.196 14 Plateau 0.83536 0.81008 18.106 5 2 Median 0.99637 0.83458 22.04 5 0 Median 0.85389 0.82585 24.897 2 0 Median 0.87182 0.74807 NaN 1 0 Median 0.10291 0.1111 NaN 1 0 Median NaN NaN NaN 0 0 Median 857870000 428550000 429310000 600080000 290750000 309330000 184780000 100150000 84631000 66892000 33489000 33403000 3823600 2047200 1776400 2293500 2118700 174790 0 0 0 10583 2005;1237 11011 52532;52533;52534;52535;52536;52537;52538;52539;52540;52541;52542;52543;52544;52545 52630;52631;52632;52633;52634;52635;52636;52637;52638;52639;52640;52641;52642;52643;52644;52645;52646;52647;52648 52639 19 GDLLEGANAYHCEK RNHQNLLDSLEQYVKGDLLEGANAYHCEKC KGDLLEGANAYHCEKCNKKVDTVKRLLIKK K G D E K C 2 0 1 1 1 0 2 2 1 0 2 1 0 0 0 0 0 0 1 0 0 0 14 0 1575.6988 Q93008;O00507 Q93008 1760 1773 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3 0.00014245 68.044 By MS/MS 1 1.1023 0.97405 NaN 1 Median NaN NaN NaN 0 0 Median 1.1023 0.97405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10507000 4754400 5752500 0 0 0 10507000 4754400 5752500 0 0 0 0 0 0 0 0 0 0 0 0 10584 3573 11012 52546 52649 52649 1 GDLLFLTNR IVVVLSGSMEPAFHRGDLLFLTNRVEDPIR EPAFHRGDLLFLTNRVEDPIRVGEIVVFRI R G D N R V 0 1 1 1 0 0 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 9 0 1047.5713 H0YNX5;H0YNA5;H0YNG3;P67812 H0YNX5 38 46 SEC11A Signal peptidase complex catalytic subunit SEC11;Signal peptidase I;Signal peptidase complex catalytic subunit SEC11A yes no 2 0.00098766 86.833 By MS/MS By MS/MS By MS/MS 1 1 2 1.3413 1.2533 6.6757 4 Median 1.2579 1.1973 NaN 1 0 Median 1.3878 1.1512 NaN 1 0 Median 1.3503 1.3134 0.16675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59521000 24499000 35022000 36643000 15026000 21618000 4839300 1660800 3178500 18039000 7812300 10226000 0 0 0 0 0 0 0 0 0 10585 1202 11013 52547;52548;52549;52550 52650;52651;52652;52653;52654;52655 52654 6 GDLPFVVPR AMNREVSSLKNKLRRGDLPFVVPRRMARKG KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R G D P R R 0 1 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 998.55492 P35579 P35579 1924 1932 MYH9 Myosin-9 yes yes 2 0.007492 51.335 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.77103 0.69817 30.155 5 Median 0.89679 0.8452 NaN 1 0 Median 0.8169 0.69817 NaN 1 0 Median 0.73988 0.82169 NaN 1 0 Median 0.77103 0.66983 NaN 1 0 Median 0.36953 0.39975 NaN 1 0 Median NaN NaN NaN 0 0 Median 15229000 8419400 6810000 7641400 3981800 3659600 4419500 2336300 2083200 1512900 841750 671150 91078 43192 47886 1564600 1216400 348150 0 0 0 10586 2244 11014 52551;52552;52553;52554;52555 52656;52657;52658 52657 3 GDMDISVPK SMSDIDLNLKGPKIKGDMDISVPKLEGDLK KGPKIKGDMDISVPKLEGDLKGPKVDVKGP K G D P K L 0 0 0 2 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 9 0 960.45863 Q09666 Q09666 4535 4543 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.049787 31.074 By matching By MS/MS 1 2 1.2095 1.1721 35.105 3 Median NaN NaN NaN 0 0 Median 1.3535 1.442 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97198 0.92327 33.754 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5403900 2598000 2805900 0 0 0 1930700 893440 1037300 0 0 0 3473100 1704500 1768600 0 0 0 0 0 0 10587 2749 11015 52556;52557;52558 52659 52659 1 GDMDVSLPK SMPDIDLNLKGPKVKGDMDVSLPKVEGDMK KGPKVKGDMDVSLPKVEGDMKVPDVDIKGP K G D P K V 0 0 0 2 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 9 0 960.45863 Q09666 Q09666 3107 3115 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.01772 41.448 By MS/MS 1 1.0442 1.0144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0442 1.0144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3373500 1668200 1705300 0 0 0 0 0 0 0 0 0 3373500 1668200 1705300 0 0 0 0 0 0 10588 2749 11016 52559 52660;52661 52661 2 GDMDVSVPK SMPDVDLHLKGPKVKGDMDVSVPKVEGEMK KGPKVKGDMDVSVPKVEGEMKVPDVDIKGP K G D P K V 0 0 0 2 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 9 0 946.44298 Q09666 Q09666 1669 1677 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0041476 61.582 By MS/MS 1 1.0181 1.0051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0181 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7404300 3549300 3855000 0 0 0 0 0 0 0 0 0 7404300 3549300 3855000 0 0 0 0 0 0 10589 2749 11017 52560 52662 52662 1 GDMVTLPAGIYHR VRDKEDQWIRIFMEKGDMVTLPAGIYHRFT EKGDMVTLPAGIYHRFTVDEKNYTKAMRLF K G D H R F 1 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 1 0 1 1 0 0 13 0 1428.7184 Q9BV57;A0A0G2JQN5 Q9BV57 122 134 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes no 2;3 1.9031E-05 94.692 By MS/MS By MS/MS By matching 4 3 1 0.89819 0.84843 21.988 8 Median 0.88511 0.85814 23.622 4 0 Median 1.0254 0.85135 6.1505 3 0 Median 0.56678 0.53267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62861000 33342000 29520000 57450000 30521000 26929000 3604600 1776500 1828000 1806400 1043700 762710 0 0 0 0 0 0 0 0 0 10590 3846 11018;11019 52561;52562;52563;52564;52565;52566;52567;52568 52663;52664;52665;52666;52667;52668;52669;52670;52671 52665 1840 9 GDNITLLQSVSN SKTKSRKQLGRIMLKGDNITLLQSVSN___ MLKGDNITLLQSVSN_______________ K G D S N - 0 0 2 1 0 1 0 1 0 1 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1259.6357 P62304;A6NHK2 P62304 81 92 SNRPE Small nuclear ribonucleoprotein E yes no 2 0.00018348 101.82 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 197200000 0 0 0 0 0 13911000 0 0 126860000 0 0 50079000 0 0 6349100 0 0 0 0 0 10591 2581 11020 52569;52570;52571;52572 52672;52673;52674;52675 52672 4 GDNIYEWR ______________________________ ______________________________ K G D W R S 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 8 0 1051.4723 A0A087X283;C9J2P0;H7C061;B7Z306;R4GND1;A0A1B0GX65;P51965;Q96LR5;Q969T4;R4GN77;C9J180 A0A087X283 6 13 UBE2E2;UBE2E1;UBE2E3 Ubiquitin-conjugating enzyme E2 E1;Ubiquitin-conjugating enzyme E2 E2;Ubiquitin-conjugating enzyme E2 E3 yes no 2 0.0024799 108.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 2 1.1141 0.94588 18.185 11 Median 1.1141 1.0815 8.4889 3 0 Median 1.2273 1.0185 30.048 3 0 Plateau 0.95173 0.93882 1.0582 2 0 Median 1.1315 0.93303 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.078 0.84279 11.335 2 0 Median 49186000 23874000 25313000 16174000 7819300 8354400 4393000 2116900 2276100 25679000 12606000 13072000 745080 366910 378170 0 0 0 2196100 964720 1231400 10592 131 11021 52573;52574;52575;52576;52577;52578;52579;52580;52581;52582;52583 52676;52677;52678;52679;52680;52681;52682;52683;52684;52685;52686;52687 52682 12 GDNLETLVLLNPSDK TFSSIVKGQRSLHHRGDNLETLVLLNPSDK GDNLETLVLLNPSDKSLYDELRNLLLDPAS R G D D K S 0 0 2 2 0 0 1 1 0 0 4 1 0 0 1 1 1 0 0 1 0 0 15 0 1626.8465 Q66K74;M0QXQ9;M0QY41;M0R1J2 Q66K74 82 96 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 2 0.00035654 57.836 By MS/MS By matching 1 2 0.86101 0.92576 20.936 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86101 0.92576 NaN 1 0 Median 0.80267 0.69411 17.991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2431200 1187200 1244000 0 0 0 0 0 0 1806000 873840 932200 625120 313350 311770 0 0 0 0 0 0 10593 3121 11022 52584;52585;52586 52688;52689 52689 2 GDNQPLHIFDK ASEKSTGKIFIYDGRGDNQPLHIFDKLHTS YDGRGDNQPLHIFDKLHTSPLTQIRLNPVY R G D D K L 0 0 1 2 0 1 0 1 1 1 1 1 0 1 1 0 0 0 0 0 0 0 11 0 1282.6306 Q96BP3;F5H7P7;D6R9Q1 Q96BP3 210 220 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2;3 0.051565 42.718 By MS/MS By matching 2 1 1.0691 1.0321 11.657 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.0866 15.942 2 1 Median 1.0691 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10557000 4973300 5584100 0 0 0 0 0 0 10231000 4821900 5409300 326240 151410 174830 0 0 0 0 0 0 10594 3609 11023 52587;52588;52589 52690;52691;52692 52690 3 GDNRLDLLK NGSEQGGVLLLENPKGDNRLDLLKLKSVVT LLENPKGDNRLDLLKLKSVVTSIFGVKNTE K G D L K L 0 1 1 2 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 1 1042.5771 P41252;A0A0A0MSX9;J3KR24 P41252 1105 1113 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.035433 51.346 By MS/MS 1 1.0517 1.0956 NaN 1 Median 1.0517 1.0956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10012000 4996100 5016200 10012000 4996100 5016200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10595 2302 11024 52590 52693 52693 1 GDPLLDQR LRSPTLYGISHDDLKGDPLLDQRRLDLVHT ISHDDLKGDPLLDQRRLDLVHTAALMLDKN K G D Q R R 0 1 0 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 0 912.46649 O75643;A0A494C1A5 O75643 945 952 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.023956 43.769 By matching By MS/MS 1 1 0.8407 0.72436 21.517 2 Median NaN NaN NaN 0 0 Median 0.73604 0.62212 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96024 0.8434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3957700 2174900 1782800 0 0 0 2545800 1551300 994440 0 0 0 1411900 623540 788360 0 0 0 0 0 0 10596 1688 11025 52591;52592 52694 52694 1 GDPTGAGPEASLEPGADSVSMQAFSR GYLKGTKGPGITGTKGDPTGAGPEASLEPG LEPGADSVSMQAFSRAQPGAAPGIYQQSAE K G D S R A 4 1 0 2 0 1 2 4 0 0 1 0 1 1 3 4 1 0 0 1 0 0 26 0 2533.1391 P98175 P98175 473 498 RBM10 RNA-binding protein 10 yes yes 2;3 3.6692E-06 46.307 By MS/MS By MS/MS 3 1 0.53754 0.59096 19.893 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54262 0.59622 20.276 3 2 Median NaN NaN NaN 0 0 Median 0.50291 0.53277 NaN 1 1 Median NaN NaN NaN 0 0 Median 11817000 7816900 4000200 0 0 0 0 0 0 9116500 5887700 3228800 0 0 0 2700600 1929200 771430 0 0 0 10597 2671 11026 52593;52594;52595;52596 52695;52696;52697;52698 52696 4 GDQENVHPDVMLVQPR ESCLEAYTGIVQGLKGDQENVHPDVMLVQP DQENVHPDVMLVQPRVEFILSFIDHIAGDE K G D P R V 0 1 1 2 0 2 1 1 1 0 1 0 1 0 2 0 0 0 0 3 0 0 16 0 1832.8839 Q14974;J3KTM9 Q14974 778 793 KPNB1 Importin subunit beta-1 yes no 2;3 1.7888E-08 144.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 2 6 5 1 3 0.84864 0.7899 15.857 22 Median 0.7543 0.71987 10.094 5 1 Median 1.0231 0.88455 12.342 2 0 Median 0.73292 0.7719 12.108 6 0 Median 0.98121 0.84574 13.56 5 1 Median 0.97035 0.98853 NaN 1 0 Median 1.2475 1.0814 33.029 3 0 Plateau 334600000 182250000 152350000 70399000 39726000 30672000 37787000 18612000 19175000 171640000 95841000 75797000 42441000 21705000 20735000 11038000 5762300 5275800 1294600 600600 694000 10598 2904 11027;11028 52597;52598;52599;52600;52601;52602;52603;52604;52605;52606;52607;52608;52609;52610;52611;52612;52613;52614;52615;52616;52617;52618 52699;52700;52701;52702;52703;52704;52705;52706;52707;52708;52709;52710;52711;52712;52713;52714;52715;52716;52717;52718;52719;52720;52721;52722;52723;52724 52709 1587 26 GDQPAASGDSDDDEPPPLPR LLLGLCIFLLYKIVRGDQPAASGDSDDDEP ASGDSDDDEPPPLPRLKRRDFTPAELRRFD R G D P R L 2 1 0 5 0 1 1 2 0 0 1 0 0 0 5 2 0 0 0 0 0 0 20 0 2034.8767 O00264 O00264 48 67 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 1.0794E-13 104.17 By MS/MS 1 0.5069 0.43036 NaN 1 Median NaN NaN NaN 0 0 Median 0.5069 0.43036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1994000 1288900 705050 0 0 0 1994000 1288900 705050 0 0 0 0 0 0 0 0 0 0 0 0 10599 1451 11029 52619 52725 52725 1 GDQTVLILHAK KRLTREAMRNYLKERGDQTVLILHAKVAQK LKERGDQTVLILHAKVAQKSYGNEKRFFCP R G D A K V 1 0 0 1 0 1 0 1 1 1 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1193.6768 Q06330;D6R927;D6RB37;D6RBQ8;D6R946;D6RA45;D6RCM1;D6REP3;D6RIV8;D6RAT2;D6RIZ8;D6R9X3;D6R9K5;D6REC2;D6RF98 Q06330 44 54 RBPJ Recombining binding protein suppressor of hairless yes no 2;3 0.0012764 65.347 By MS/MS By MS/MS 2 2 1.3098 1.2267 20.791 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3902 1.4209 NaN 1 1 Median 1.2341 1.059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11113000 3232700 7880400 0 0 0 0 0 0 5959400 1649400 4310000 5153600 1583200 3570400 0 0 0 0 0 0 10600 2725 11030 52620;52621;52622;52623 52726;52727;52728;52729 52728 4 GDREQLLQR ______________________________ ______________________________ M G D Q R A 0 2 0 1 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1113.5891 Q04917;F8WEB6;A2IDB1 Q04917 2 10 YWHAH 14-3-3 protein eta yes no 2 3.983E-32 206.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.1266 1.0361 4.6004 7 Median 0.96431 1.0308 NaN 1 0 Median 1.2315 1.0458 NaN 1 0 Median 1.0136 1.0642 3.7908 2 0 Median 1.129 1.0109 0.30113 2 2 Median NaN NaN NaN 0 0 Median 1.2868 1.1463 NaN 1 1 Median 128680000 60999000 67684000 42735000 19385000 23350000 30715000 13689000 17026000 36406000 18790000 17616000 15953000 7935700 8017500 0 0 0 2874100 1199700 1674400 10601 2714 11031 52624;52625;52626;52627;52628;52629;52630 52730;52731;52732;52733;52734;52735;52736;52737;52738 52735 9 GDRSEDFGVNEDLADSDAR DTSGDFRNALLSLAKGDRSEDFGVNEDLAD EDFGVNEDLADSDARALYEAGERRKGTDVN K G D A R A 2 2 1 5 0 0 2 2 0 0 1 0 0 1 0 2 0 0 0 1 0 0 19 1 2066.8777 P04083 P04083 186 204 ANXA1 Annexin A1 yes yes 2;3 3.2826E-24 176.33 By MS/MS By MS/MS By MS/MS 3 4 2 1.1863 1.092 12.795 9 Median 1.3046 1.3727 21.688 3 0 Plateau 1.1696 1.0766 7.8158 4 0 Median NaN NaN NaN 0 0 Median 1.1984 1.0861 3.0028 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151720000 59158000 92558000 132050000 50723000 81326000 13182000 5812200 7369400 0 0 0 6485000 2622300 3862700 0 0 0 0 0 0 10602 1844 11032 52631;52632;52633;52634;52635;52636;52637;52638;52639 52739;52740;52741;52742;52743;52744;52745;52746;52747 52741 9 GDSEPLSEAAQAHTR LQRRVEELCQRVYSRGDSEPLSEAAQAHTR GDSEPLSEAAQAHTRELGRENRRLQDLATQ R G D T R E 3 1 0 1 0 1 2 1 1 0 1 0 0 0 1 2 1 0 0 0 0 0 15 0 1567.7227 O75150;H3BP71;H3BS50 O75150 217 231 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 8.6968E-05 58.814 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.97235 0.91336 4.3965 3 Median 0.97235 0.97363 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81358 0.89496 NaN 1 0 Median 1.0728 0.91336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8418900 4323400 4095500 1381600 782350 599290 0 0 0 4756800 2315500 2441300 2280400 1225500 1054900 0 0 0 0 0 0 10603 1648 11033 52640;52641;52642;52643 52748;52749;52750;52751;52752;52753 52750 6 GDSGAAPDVDDK ESMVETHDPILGSGKGDSGAAPDVDDKLCL SGKGDSGAAPDVDDKLCLRMKLVSPETEAS K G D D K L 2 0 0 4 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 0 0 12 0 1145.4837 A6NNK5;Q12888;C9JXV0 A6NNK5 978 989 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0049172 42.336 By matching By MS/MS 1 3 1.0247 0.93897 15.621 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.645 0.71455 NaN 1 0 Median 1.0545 0.95875 5.2016 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1766300 868240 898050 0 0 0 0 0 0 572720 304610 268110 1193600 563640 629940 0 0 0 0 0 0 10604 530 11034 52644;52645;52646;52647 52754;52755 52755 2 GDSKKDDEENYLDLFSHK HAMQLLTAEIEKIQKGDSKKDDEENYLDLF KKDDEENYLDLFSHKNMKLKERVLIPVKQY K G D H K N 0 0 1 4 0 0 2 1 1 0 2 3 0 1 0 2 0 0 1 0 0 0 18 2 2138.9756 Q07666 Q07666 135 152 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 4 3.9154E-06 50.787 By MS/MS By matching By MS/MS By matching 2 4 1 1 1.1452 1.2068 20.584 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87733 1.0329 10.529 2 0 Median 1.4274 1.4296 6.2651 4 0 Median 0.88451 0.96349 NaN 1 0 Median 0.92882 0.90976 NaN 1 0 Median 106100000 54306000 51790000 0 0 0 0 0 0 88989000 45986000 43003000 5552600 2025900 3526700 11117000 6118800 4998300 437300 175790 261510 10605 2731 11035 52648;52649;52650;52651;52652;52653;52654;52655 52756;52757;52758;52759;52760;52761 52756 6 GDSPVTSPFQNYSSIHSQSR ATSSSLTAHLRSLSKGDSPVTSPFQNYSSI TSPFQNYSSIHSQSRSTSSPSLHSRSPSIS K G D S R S 0 1 1 1 0 2 0 1 1 1 0 0 0 1 2 6 1 0 1 1 0 0 20 0 2193.0087 Q9H1A4 Q9H1A4 311 330 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 3 7.7599E-09 68.49 By MS/MS By MS/MS 1 1 0.8043 0.78685 5.409 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69487 0.75732 NaN 1 0 Median 0.93097 0.81753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15350000 8887000 6462800 0 0 0 0 0 0 13073000 7519100 5553900 2276800 1367900 908960 0 0 0 0 0 0 10606 3933 11036 52656;52657 52762;52763;52764;52765 52763 4 GDSVIVVLR KPVNKDRYISKMFLRGDSVIVVLRNPLIAG SKMFLRGDSVIVVLRNPLIAGK________ R G D L R N 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 3 0 0 9 0 956.56548 P62316;K7EJB5 P62316 103 111 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0004577 125.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 1.406 1.1487 15.911 10 Median 1.1001 1.0598 2.5872 2 0 Median 1.4951 1.2399 11.945 3 0 Median 1.053 1.063 2.5336 2 1 Median 1.4295 1.1487 4.291 2 0 Median 1.6337 1.6816 NaN 1 0 Median NaN NaN NaN 0 0 Median 473600000 216420000 257180000 40526000 18173000 22353000 58806000 24420000 34385000 324590000 154040000 170540000 34416000 13532000 20884000 15259000 6245200 9013400 0 0 0 10607 2586 11037 52658;52659;52660;52661;52662;52663;52664;52665;52666;52667 52766;52767;52768;52769;52770;52771;52772;52773;52774;52775;52776;52777 52769 12 GDSVIVVLRNPLIAGK KPVNKDRYISKMFLRGDSVIVVLRNPLIAG DSVIVVLRNPLIAGK_______________ R G D G K - 1 1 1 1 0 0 0 2 0 2 2 1 0 0 1 1 0 0 0 3 0 0 16 1 1649.9828 P62316;K7EJB5 P62316 103 118 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0010907 49.5 By MS/MS By matching 1 1 0.80643 0.87312 22.608 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9821 1.0245 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66218 0.74413 NaN 1 0 Median NaN NaN NaN 0 0 Median 3804400 1792800 2011600 0 0 0 0 0 0 2846300 1202500 1643800 0 0 0 958130 590270 367860 0 0 0 10608 2586 11038 52668;52669 52778 52778 1 GDTALDMR SDKRRNYNYRVVMLKGDTALDMRGRCSAGQ YRVVMLKGDTALDMRGRCSAGQKVLASLII K G D M R G 1 1 0 2 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 8 0 877.39637 Q92878;A0A1W2PQ90;A0A494BZX8;H7C0V2 Q92878 1191 1198 RAD50 DNA repair protein RAD50 yes no 2 0.013601 52.716 By MS/MS By matching 1 1 1.2663 1.226 3.7196 2 Median NaN NaN NaN 0 0 Median 1.3969 1.1942 NaN 1 0 Median 1.1479 1.2587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5261400 2262500 2999000 0 0 0 2718600 1180100 1538500 2542800 1082400 1460500 0 0 0 0 0 0 0 0 0 10609 3561 11039 52670;52671 52779;52780 52779 2 GDTNIKPILQVINIRPITTGNSPPR VGQLSEGAIAAIMQKGDTNIKPILQVINIR VINIRPITTGNSPPRYRLLMSDGLNTLSSF K G D P R Y 0 2 3 1 0 1 0 2 0 5 1 1 0 0 4 1 3 0 0 1 0 0 25 2 2713.5239 P27694;I3L2M5;I3L524 P27694 17 41 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3;4 2.2728E-05 35.016 By matching By matching By MS/MS By matching By matching 1 1 2 1 2 0.62906 0.70571 26.554 7 Median 0.44095 0.44514 NaN 1 0 Median 0.65422 0.72367 NaN 1 0 Median 0.59584 0.66845 7.671 2 0 Median 0.77471 0.70661 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6806 0.59155 50.069 2 0 Median 11502000 7545900 3955800 2046800 1745500 301360 797800 322390 475410 6120400 4005200 2115200 260660 157210 103440 0 0 0 2276000 1315500 960410 10610 2156 11040 52672;52673;52674;52675;52676;52677;52678 52781;52782 52781 2 GDTPGHATPGHGGATSSAR PTPSHTPAGAATPGRGDTPGHATPGHGGAT GHATPGHGGATSSARKNRWDETPKTERDTP R G D A R K 3 1 0 1 0 0 0 5 2 0 0 0 0 0 2 2 3 0 0 0 0 0 19 0 1732.7877 O75533 O75533 271 289 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.023445 14.77 By MS/MS By matching By matching By matching 1 1 1 1 0.84733 0.82095 8.4138 4 Median NaN NaN NaN 0 0 Median 0.93504 0.82758 NaN 1 0 Median 0.76784 0.81437 NaN 1 0 Median 0.97685 0.85562 NaN 1 0 Median 0.70864 0.70704 NaN 1 0 Median NaN NaN NaN 0 0 Median 1134200 564720 569510 0 0 0 586290 270890 315400 105550 53333 52214 263150 127040 136110 179250 113460 65784 0 0 0 10611 1683 11041 52679;52680;52681;52682 52783 52783 1 GDTVATLSER DAGQIILQEAVPVKRGDTVATLSERVKLAE VPVKRGDTVATLSERVKLAEHKIFPAALQL R G D E R V 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 10 0 1047.5197 P22102 P22102 966 975 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.013895 56.258 By MS/MS 1 1.4229 1.3937 NaN 1 Median 1.4229 1.3937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2619000 1212400 1406600 2619000 1212400 1406600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10612 2098 11042 52683 52784 52784 1 GDVAEGDLIEHFSQFGTVEK GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF GDLIEHFSQFGTVEKAEIIADKQSGKKRGF K G D E K A 1 0 0 2 0 1 3 3 1 1 1 1 0 2 0 1 1 0 0 2 0 0 20 0 2177.0277 Q13151 Q13151 107 126 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 2.8635E-08 68.83 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 6 2 1.0892 1.0104 11.841 17 Median 1.122 1.1018 NaN 1 0 Median 1.2915 1.1218 NaN 1 0 Median 0.95113 0.91955 4.9678 3 1 Plateau 1.2302 1.0365 17.419 4 0 Median 1.0231 1.0466 13.631 6 0 Median 1.2102 1.0188 1.1789 2 0 Median 221220000 116670000 104550000 1333700 652740 680970 122360 56254 66107 178780000 96739000 82045000 6608100 2763400 3844700 30614000 14840000 15774000 3754400 1618000 2136400 10613 2790 11043 52684;52685;52686;52687;52688;52689;52690;52691;52692;52693;52694;52695;52696;52697;52698;52699;52700 52785;52786;52787;52788;52789;52790;52791;52792;52793;52794;52795;52796 52785 12 GDVAFVKDQTVIQNTDGNNNEAWAK RYYGYTGAFRCLVEKGDVAFVKDQTVIQNT VIQNTDGNNNEAWAKNLKKENFEVLCKDGT K G D A K N 3 0 4 3 0 2 1 2 0 1 0 2 0 1 0 0 2 1 0 3 0 0 25 1 2733.2994 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 554 578 yes no 3 2.3651E-29 100.08 By MS/MS 2 0.20546 0.19355 NaN 1 Median 0.20546 0.19355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29999000 29690000 308160 29999000 29690000 308160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10614 769 11044 52701;52702 52797;52798 52797 2 GDVDISLPK PMPDFDLHLKGPKVKGDVDISLPKVEGDLK KGPKVKGDVDISLPKVEGDLKGPEVDIRGP K G D P K V 0 0 0 2 0 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 942.50221 Q09666 Q09666 2979 2987 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0048762 59.35 By matching By matching By MS/MS 1 1 2 0.96748 0.95213 16.871 4 Median 0.90978 0.90303 NaN 1 0 Median 0.87295 0.76131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1357 1.0667 8.5787 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12365000 6176900 6187700 3185500 1610400 1575100 4493600 2337600 2155900 0 0 0 4685600 2228900 2456600 0 0 0 0 0 0 10615 2749 11045 52703;52704;52705;52706 52799;52800 52800 2 GDVDVSLPK SMPDVDLHLKGPKVKGDVDVSLPKLEGDLT KGPKVKGDVDVSLPKLEGDLTGPSVDVEVP K G D P K L 0 0 0 2 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 9 0 928.48656 Q09666 Q09666 2133 2141 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00069962 103.74 By MS/MS By MS/MS By matching 1 2 1 0.98211 0.97493 12.268 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89596 0.95667 NaN 1 0 Median 1.1103 1.0601 9.1663 2 0 Median NaN NaN NaN 0 0 Median 0.9796 0.83947 NaN 1 0 Median 44029000 21504000 22525000 0 0 0 0 0 0 17193000 8548800 8643900 24944000 12006000 12938000 0 0 0 1892400 949670 942700 10616 2749 11046 52707;52708;52709;52710 52801;52802;52803;52804;52805;52806;52807 52804 7 GDVDVSVPK SMPDVDLHLKGPKVKGDVDVSVPKVEGEMK KGPKVKGDVDVSVPKVEGEMKVPDVEIKGP K G D P K V 0 0 0 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 3 0 0 9 0 914.47091 Q09666 Q09666 1211 1219 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.029808 49.715 By MS/MS 1 0.89203 0.86946 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89203 0.86946 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3962300 2058500 1903900 0 0 0 0 0 0 0 0 0 3962300 2058500 1903900 0 0 0 0 0 0 10617 2749 11047 52711 52808 52808 1 GDVEAFAK CQFGLPAEAVEAANKGDVEAFAKAMQNNAK AVEAANKGDVEAFAKAMQNNAKPEQKEGDT K G D A K A 2 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 835.40758 A0A087WX59;Q16186 A0A087WX59 333 340 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 2 0.040404 55.676 By MS/MS 1 1.1048 0.95275 NaN 1 Median NaN NaN NaN 0 0 Median 1.1048 0.95275 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1985500 940190 1045400 0 0 0 1985500 940190 1045400 0 0 0 0 0 0 0 0 0 0 0 0 10618 65 11048 52712 52809 52809 1 GDVEEDETIPDSEQDIRPR VNGMKYSDIDIILLKGDVEEDETIPDSEQD EDETIPDSEQDIRPRFHRSRTVAQQHDEDG K G D P R F 0 2 0 4 0 1 4 1 0 2 0 0 0 0 2 1 1 0 0 1 0 0 19 1 2198.9927 Q92973 Q92973 328 346 TNPO1 Transportin-1 yes yes 3 9.7789E-09 83.418 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.73357 0.81501 6.9744 5 Median 0.71394 0.76199 9.5135 2 0 Median 0.86034 0.8512 NaN 1 0 Median 0.72038 0.83238 NaN 1 0 Median 0.88803 0.78689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23815000 12971000 10844000 7407300 3969900 3437400 4181100 2065100 2116000 10722000 6177900 4543600 1505300 758200 747130 0 0 0 0 0 0 10619 3570 11049 52713;52714;52715;52716;52717 52810;52811;52812;52813;52814;52815 52812 6 GDVENIEVVQK SRLAVTRVIQALAMKGDVENIEVVQKMLNG LAMKGDVENIEVVQKMLNGLEDSIGLSKMV K G D Q K M 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1228.6299 P42704 P42704 1153 1163 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00019133 76.1 By MS/MS By MS/MS By MS/MS 1 2 1 1.1771 1.071 18.445 4 Median 1.0101 0.97233 NaN 1 0 Median 1.1227 0.97788 27.404 2 0 Median NaN NaN NaN 0 0 Median 1.3716 1.1797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62928000 27283000 35645000 25462000 12171000 13292000 33695000 13459000 20236000 0 0 0 3770300 1653200 2117100 0 0 0 0 0 0 10620 2315 11050 52718;52719;52720;52721 52816;52817;52818;52819;52820 52818 5 GDVGLGLVK SAGCPHVTLQFADSKGDVGLGLVKEGLVMV QFADSKGDVGLGLVKEGLVMVEVRKEKQFQ K G D V K E 0 0 0 1 0 0 0 3 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 856.50182 Q7KZF4 Q7KZF4 849 857 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0071437 52.403 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 1.0801 1.076 17.248 8 Median 1.1053 1.0748 NaN 1 0 Median 1.2176 1.0545 22.091 3 0 Median 1.0555 1.1647 NaN 1 0 Median 0.85022 1.1415 5.9235 2 0 Median NaN NaN NaN 0 0 Median 0.95258 0.83353 NaN 1 0 Median 20894000 9970200 10924000 6562900 3223100 3339900 6935600 3205000 3730600 4446900 2178900 2268100 2852500 1305100 1547400 0 0 0 96391 58147 38244 10621 3214 11051 52722;52723;52724;52725;52726;52727;52728;52729 52821;52822;52823;52824;52825;52826;52827;52828 52827 8 GDVGLVAENSR TGRQLESVRAEAAEKGDVGLVAENSRSTQR AAEKGDVGLVAENSRSTQRLMLPPPPLTAS K G D S R S 1 1 1 1 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1115.5571 F5GZ28;P18858;M0R0Q7 F5GZ28 309 319 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.0013674 59.426 By MS/MS 1 1.0744 0.90811 NaN 1 Median NaN NaN NaN 0 0 Median 1.0744 0.90811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4605200 1969000 2636200 0 0 0 4605200 1969000 2636200 0 0 0 0 0 0 0 0 0 0 0 0 10622 1014 11052 52730 52829 52829 1 GDVGMAGVAIDTVEDTK LATHRGYDSDNPRVRGDVGMAGVAIDTVED VGMAGVAIDTVEDTKILFDGIPLEKMSVSM R G D T K I 2 0 0 3 0 0 1 3 0 1 0 1 1 0 0 0 2 0 0 3 0 0 17 0 1676.7927 P22033 P22033 155 171 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 0.00022551 47.189 By MS/MS 1 0.89744 0.84051 NaN 1 Median 0.89744 0.84051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5369600 2785800 2583800 5369600 2785800 2583800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10623 2095 11053 52731 52830 52830 1 GDVGSADIQDLEK PLKVEFLECSAKGGRGDVGSADIQDLEKWL GRGDVGSADIQDLEKWLAKIA_________ R G D E K W 1 0 0 3 0 1 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1345.6361 Q9Y5M8;H7C4H2 Q9Y5M8 253 265 SRPRB Signal recognition particle receptor subunit beta yes no 2 7.1705E-05 86.014 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.061 0.94242 23.795 4 Median 1.5057 1.4045 NaN 1 0 Median 1.1571 0.97319 NaN 1 0 Median 0.97222 0.91261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97294 0.80807 NaN 1 0 Median 21217000 10692000 10525000 4252500 1820900 2431600 4551500 2276400 2275100 8898300 4775500 4122900 0 0 0 0 0 0 3514700 1819500 1695200 10624 4463 11054 52732;52733;52734;52735 52831;52832;52833;52834 52832 4 GDVLTIVAVTK YNFHGTAEQDLPFCKGDVLTIVAVTKDPNW PFCKGDVLTIVAVTKDPNWYKAKNKVGREG K G D T K D 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 2 0 0 3 0 0 11 0 1114.6598 P41240;H3BUM9;H3BN15 P41240 33 43 CSK Tyrosine-protein kinase CSK yes no 2 0.023382 33.875 By matching By MS/MS 1 1 1.081 1.0085 23.761 2 Median NaN NaN NaN 0 0 Median 0.96745 0.85251 NaN 1 0 Median 1.2079 1.193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4933200 1602000 3331200 0 0 0 759740 360040 399700 4173500 1241900 2931500 0 0 0 0 0 0 0 0 0 10625 2300 11055 52736;52737 52835 52835 1 GDVPTKRPPVLR KQRLLARAEKKAAGKGDVPTKRPPVLRAGV AGKGDVPTKRPPVLRAGVNTVTTLVENKKA K G D L R A 0 2 0 1 0 0 0 1 0 0 1 1 0 0 3 0 1 0 0 2 0 0 12 2 1333.783 P62424;Q5T8U2;Q5T8U3 P62424 126 137 RPL7A 60S ribosomal protein L7a yes no 3 0.00024551 61.344 By MS/MS By MS/MS By MS/MS 2 2 1 0.82905 0.84759 12.888 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89887 0.84653 0.26006 2 0 Median 0.71987 0.79571 8.9334 2 0 Median 0.99891 1.0658 NaN 1 0 Median 25109000 14276000 10833000 0 0 0 0 0 0 0 0 0 3485200 2004400 1480800 20992000 11907000 9084800 632090 365100 266990 10626 2589 11056 52738;52739;52740;52741;52742 52836;52837;52838;52839;52840;52841;52842 52837 7 GDVQAQVGLGQLHLHGGR LEEDLIQYYQFLAEKGDVQAQVGLGQLHLH QAQVGLGQLHLHGGRGVEQNHQRAFDYFNL K G D G R G 1 1 0 1 0 3 0 5 2 0 3 0 0 0 0 0 0 0 0 2 0 0 18 0 1840.9656 Q9UBV2 Q9UBV2 371 388 SEL1L Protein sel-1 homolog 1 yes yes 3 7.0686E-05 42.338 By matching By MS/MS 1 1 0.95185 0.88146 6.5358 2 Median 0.93409 0.92315 NaN 1 0 Median 0.96995 0.84165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4536400 2174700 2361700 2077700 921880 1155800 2458700 1252900 1205900 0 0 0 0 0 0 0 0 0 0 0 0 10627 4250 11057 52743;52744 52843 52843 1 GDVREPFHSILSVLK LYELVVDAIFGFSFKGDVREPFHSILSVLK GDVREPFHSILSVLKGLTVPIASIDIPSGW K G D L K G 0 1 0 1 0 0 1 1 1 1 2 1 0 1 1 2 0 0 0 2 0 0 15 1 1695.9308 Q8NCW5;Q5T3I4 Q8NCW5 194 208 APOA1BP NAD(P)H-hydrate epimerase yes no 2;3 0.0028298 48.004 By MS/MS By matching 2 1 0.84641 0.88544 12.426 3 Median 0.77699 0.81178 12.283 2 0 Median 1.0236 0.94687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33596000 17374000 16222000 25067000 13008000 12060000 8528200 4365600 4162600 0 0 0 0 0 0 0 0 0 0 0 0 10628 3420 11058 52745;52746;52747 52844;52845;52846 52845 3 GDVTAEEAAGASPAK ______________________________ GDVTAEEAAGASPAKANGQENGHVKSNGDL R G D A K A 5 0 0 1 0 0 2 2 0 0 0 1 0 0 1 1 1 0 0 1 0 0 15 0 1372.647 P49006 P49006 11 25 MARCKSL1 MARCKS-related protein yes yes 2 0.00066957 47.288 By MS/MS By MS/MS By MS/MS 1 1 1 0.83323 0.80921 30.644 3 Median 0.59535 0.56677 NaN 1 0 Median 1.229 1.0431 NaN 1 0 Median 0.83323 0.80921 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4015800 2146500 1869300 2049900 1082500 967360 594460 305680 288780 1371400 758300 613120 0 0 0 0 0 0 0 0 0 10629 2370 11059 52748;52749;52750 52847;52848;52849 52847 3 GDVTAQIALQPALK NLNVTEEKYQEALAKGDVTAQIALQPALKF KGDVTAQIALQPALKFNGGGHINHSIFWTN K G D L K F 3 0 0 1 0 2 0 1 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1423.8035 P04179;F5H3C5;F5H4R2;F5GYZ5 P04179 76 89 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 2 2.8072E-07 121.61 By MS/MS By MS/MS By matching 1 2 1 1.5472 1.3247 54.531 4 Median 0.91055 0.8385 NaN 1 0 Median 1.5472 1.3247 26.97 2 0 Median NaN NaN NaN 0 0 Median 3.5777 2.9473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133890000 67041000 66846000 120190000 61174000 59021000 13236000 5769100 7466800 0 0 0 456400 98310 358090 0 0 0 0 0 0 10630 1845 11060 52751;52752;52753;52754 52850;52851;52852;52853;52854 52853 5 GDVTITNDGATILK SLGPKGMDKMIQDGKGDVTITNDGATILKQ KGDVTITNDGATILKQMQVLHPAARMLVEL K G D L K Q 1 0 1 2 0 0 0 2 0 2 1 1 0 0 0 0 3 0 0 1 0 0 14 0 1416.746 P50991 P50991 66 79 CCT4 T-complex protein 1 subunit delta yes yes 2 0.00013568 80.979 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.0113 0.8934 6.3417 5 Median 1.0078 0.94542 9.6941 2 0 Median 1.1148 0.9474 NaN 1 0 Median 0.9223 0.8934 NaN 1 1 Median 1.0113 0.86725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57911000 29060000 28851000 23681000 11994000 11687000 6437100 2987000 3450100 20608000 10566000 10042000 7184900 3512400 3672500 0 0 0 0 0 0 10631 2424 11061 52755;52756;52757;52758;52759 52855;52856;52857;52858;52859;52860 52855 6 GDVVIVLTGWRPGSGFTNTMR NFAMNVGKARGFFKKGDVVIVLTGWRPGSG LTGWRPGSGFTNTMRVVPVP__________ K G D M R V 0 2 1 1 0 0 0 4 0 1 1 0 1 1 1 1 3 1 0 3 0 0 21 1 2262.1579 P14618;B4DNK4 P14618 506 526 PKM Pyruvate kinase PKM;Pyruvate kinase no no 3 8.455E-07 46.702 By MS/MS 2 0.87378 0.79077 16.677 2 Median NaN NaN NaN 0 0 Median 0.87378 0.79077 16.677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7567800 4020700 3547100 0 0 0 7567800 4020700 3547100 0 0 0 0 0 0 0 0 0 0 0 0 10632 2005 11062 52760;52761 52861;52862 52862 2 GDVVNQDDLYQALASGK FQKMKETAVFINISRGDVVNQDDLYQALAS VVNQDDLYQALASGKIAAAGLDVTSPEPLP R G D G K I 2 0 1 3 0 2 0 2 0 0 2 1 0 0 0 1 0 0 1 2 0 0 17 0 1791.8639 Q9UBQ7;U3KQ56 Q9UBQ7 246 262 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 2 0.00089236 54.7 By MS/MS 1 1.1867 1.1256 NaN 1 Median 1.1867 1.1256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5664100 2571600 3092500 5664100 2571600 3092500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10633 4243 11063 52762 52863 52863 1 GDVVVSLPK SMPDFDLNLKGPKMKGDVVVSLPKVEGDLK KGPKMKGDVVVSLPKVEGDLKGPEVDIKGP K G D P K V 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 3 0 0 9 0 912.52803 Q09666 Q09666 3687 3695 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.061938 27.824 By matching By MS/MS 1 1 0.95064 0.91323 9.5004 2 Median 1.0176 0.97669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88807 0.8539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6349000 3238700 3110300 4319300 2108500 2210900 0 0 0 0 0 0 2029700 1130200 899490 0 0 0 0 0 0 10634 2749 11064 52763;52764 52864 52864 1 GDWKPEGDEWLK GAGGTIITNFERLVKGDWKPEGDEWLKMSY LVKGDWKPEGDEWLKMSYPAKVTLLGSVIF K G D L K M 0 0 0 2 0 0 2 2 0 0 1 2 0 0 1 0 0 2 0 0 0 0 12 1 1458.6779 A0A0A0MRS4;Q9NVV0;H7C3B3;H7C4C1 A0A0A0MRS4 113 124 TMEM38B Trimeric intracellular cation channel type B yes no 3 0.0049887 34.768 By MS/MS By matching 2 2 0.94949 0.98029 17.766 4 Median 0.90012 0.95535 19.547 2 0 Median 1.0646 1.0279 22.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10783000 5054100 5729000 6573900 3019900 3554000 4209200 2034300 2174900 0 0 0 0 0 0 0 0 0 0 0 0 10635 170 11065 52765;52766;52767;52768 52865;52866 52865 2 GDWPGVVLSMER TPDLLFAEGTAAYARGDWPGVVLSMERALR YARGDWPGVVLSMERALRSRAALRALRLRC R G D E R A 0 1 0 1 0 0 1 2 0 0 1 0 1 0 1 1 0 1 0 2 0 0 12 0 1344.6496 Q32P28;E2QRI1 Q32P28 49 60 LEPRE1;P3H1 Prolyl 3-hydroxylase 1 yes no 2 0.0050479 42.001 By matching By MS/MS 1 1 0.72606 0.7612 42.986 2 Median 0.54782 0.56168 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96228 1.0316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378100 1179000 1199100 1032900 576140 456720 0 0 0 1345300 602840 742420 0 0 0 0 0 0 0 0 0 10636 3007 11066 52769;52770 52867;52868 52867 2 GDWSVGAPGGVQEITYTVPADK GFGGLAAARGRGRGRGDWSVGAPGGVQEIT PGGVQEITYTVPADKCGLVIGKGGENIKSI R G D D K C 2 0 0 2 0 1 1 4 0 1 0 1 0 0 2 1 2 1 1 3 0 0 22 0 2246.0855 Q96I24 Q96I24 344 365 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 0.0004073 33.301 By matching By MS/MS By matching 1 2 2 0.78803 0.76371 46.703 5 Median 0.55802 0.5376 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74035 0.7203 8.2752 2 0 Median 1.5588 1.3566 40.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32374000 18324000 14051000 2663300 1785400 877990 0 0 0 28646000 16027000 12619000 1064800 510970 553870 0 0 0 0 0 0 10637 3673 11067 52771;52772;52773;52774;52775 52869;52870;52871 52870 3 GDYAPILQK LKSYEFRGSPFQVTRGDYAPILQKVVEQLE PFQVTRGDYAPILQKVVEQLEKAKAYAANS R G D Q K V 1 0 0 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 9 0 1003.5338 G3V1D3;G3V180;Q9NY33;E9PQ14 G3V1D3 268 276 DPP3 Dipeptidyl peptidase 3 yes no 2 0.0060753 55.676 By MS/MS 1 0.94962 0.86443 NaN 1 Median 0.94962 0.86443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10257000 5198100 5059100 10257000 5198100 5059100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10638 1102 11068 52776 52872;52873 52872 2 GDYDAFFEAR GYPLPPQIFNESQYRGDYDAFFEARENNAV ESQYRGDYDAFFEARENNAVYAFLGLTAPP R G D A R E 2 1 0 2 0 0 1 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1189.504 O75368 O75368 77 86 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 2 0.0034408 56.729 By matching By matching By MS/MS 1 1 1 1.3721 1.2311 30.959 3 Median 1.3721 1.3358 NaN 1 0 Median 1.4608 1.2311 NaN 1 0 Median 0.74309 0.75364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8706200 4770800 3935400 1029800 374270 655530 756050 301860 454190 6920400 4094600 2825700 0 0 0 0 0 0 0 0 0 10639 1663 11069 52777;52778;52779 52874;52875 52875 2 GDYDLNAVR QTNNNPFQVPIEEQRGDYDLNAVRLCFQVT PIEEQRGDYDLNAVRLCFQVTVRDPSGRPL R G D V R L 1 1 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1021.4829 Q2TAM5;E9PKH5;A0A087X0W8;Q04206;E9PI38;E9PQS6;E9PKV4;A0A087WVP0 Q2TAM5 150 158 RELA Transcription factor p65 yes no 2 0.014601 44.349 By matching By MS/MS 1 1 1.2512 1.1566 5.3672 2 Median 1.22 1.2013 NaN 1 0 Median 1.2832 1.1135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6775400 2529700 4245700 3694000 1319800 2374100 3081400 1209800 1871600 0 0 0 0 0 0 0 0 0 0 0 0 10640 114 11070 52780;52781 52876 52876 1 GDYGPPGR PPPTDPYGRPPPYDRGDYGPPGREMDTART RPPPYDRGDYGPPGREMDTARTPLSEAEFE R G D G R E 0 1 0 1 0 0 0 3 0 0 0 0 0 0 2 0 0 0 1 0 0 0 8 0 817.37187 F8WJN3;Q16630 F8WJN3 320 327 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 0.012201 55.441 By matching By MS/MS By matching By matching 1 1 1 1 0.93754 0.8441 15.367 4 Median NaN NaN NaN 0 0 Median 0.84542 0.73828 NaN 1 0 Median 0.75184 0.8041 NaN 1 0 Median 1.0397 0.88609 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2687 1.0561 NaN 1 0 Median 4000800 2128900 1871900 0 0 0 794440 408180 386260 2575000 1444200 1130800 326880 141150 185730 0 0 0 304470 135400 169070 10641 1099 11071 52782;52783;52784;52785 52877 52877 1 GDYPLEAVR LDGADCIMLSGETAKGDYPLEAVRMQHLIA SGETAKGDYPLEAVRMQHLIAREAEAAIYH K G D V R M 1 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 1 1 0 0 9 0 1018.5084 H3BTN5;P14618;B4DNK4 P14618 368 376 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00053085 117.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 0.98484 0.88944 93.892 12 Median 0.96812 2.564 87.138 4 0 Linear 0.99894 0.82183 5.4057 4 0 Median 3.1963 3.3374 182.94 2 0 Median 1.0304 0.87339 8.0436 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 428440000 204910000 223530000 210390000 104870000 105530000 176670000 85496000 91179000 37702000 12654000 25048000 3671500 1893000 1778500 0 0 0 0 0 0 10642 2005;1237 11072 52786;52787;52788;52789;52790;52791;52792;52793;52794;52795;52796;52797 52878;52879;52880;52881;52882;52883;52884;52885;52886;52887;52888;52889;52890;52891;52892;52893;52894;52895;52896;52897;52898;52899;52900;52901;52902 52882 25 GDYPQAMK LALEEKNKGNECFQKGDYPQAMKHYTEAIK GNECFQKGDYPQAMKHYTEAIKRNPKDAKL K G D M K H 1 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 8 0 908.4062 P31948 P31948 374 381 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.013171 53.554 By MS/MS By MS/MS 1 1 0.97402 0.8732 10.288 2 Median 0.97745 0.93909 NaN 1 0 Median 0.9706 0.81193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18297000 9184000 9113200 3752800 1776400 1976400 14544000 7407700 7136700 0 0 0 0 0 0 0 0 0 0 0 0 10643 2212 11073 52798;52799 52903;52904;52905 52904 3 GDYYEAHQMYR GVQRVEGKLRASVEKGDYYEAHQMYRTLFF SVEKGDYYEAHQMYRTLFFRYMSQSKHTEA K G D Y R T 1 1 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 3 0 0 0 11 0 1431.5877 Q7L5D6 Q7L5D6 37 47 GET4 Golgi to ER traffic protein 4 homolog yes yes 2;3 0.00017857 78.334 By MS/MS By MS/MS 2 2 1.0746 1.027 15.719 4 Median 1.0694 1.027 13.375 2 0 Median 1.1556 0.96853 22.977 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11623000 5495200 6127600 5944700 2521100 3423600 5678100 2974000 2704100 0 0 0 0 0 0 0 0 0 0 0 0 10644 3225 11074 52800;52801;52802;52803 52906;52907;52908;52909;52910;52911 52910 6 GEAAAERPGEAAVASSPSK ______________________________ AERPGEAAVASSPSKANGQENGHVKVNGDA K G E S K A 6 1 0 0 0 0 3 2 0 0 0 1 0 0 2 3 0 0 0 1 0 0 19 1 1783.8701 P29966 P29966 12 30 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 2;3 3.5811E-08 68.034 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.67764 0.71899 6.6109 5 Median 0.67379 0.67596 NaN 1 0 Median 0.73219 0.66783 10.438 2 1 Median 0.64797 0.71933 NaN 1 0 Median 0.78952 0.72391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38295000 20346000 17950000 10435000 5938500 4496100 25209000 12890000 12319000 1281800 702600 579180 1369700 814620 555080 0 0 0 0 0 0 10645 2175 11075 52804;52805;52806;52807;52808 52912;52913;52914;52915;52916;52917;52918;52919 52915 8 GEADAMSLDGGYLYIAGK ETAENTEECIAKIMKGEADAMSLDGGYLYI DAMSLDGGYLYIAGKCGLVPVLAENYKTEG K G E G K C 3 0 0 2 0 0 1 4 0 1 2 1 1 0 0 1 0 0 2 0 0 0 18 0 1829.8506 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 406 423 yes no 2 6.6676E-06 66.262 By MS/MS 2 0.041297 0.039292 154.44 2 Median 0.041297 0.039292 154.44 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9057200 8786800 270450 9057200 8786800 270450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 10646 769 11076;11077 52809;52810 52920;52921 52920 292 2 GEADLFDSGDIFSTGTGSQSVER GVDRSPFAKSLGHSRGEADLFDSGDIFSTG GDIFSTGTGSQSVERTKPKAKIAENPANPP R G E E R T 1 1 0 3 0 1 2 4 0 1 1 0 0 2 0 4 2 0 0 1 0 0 23 0 2374.0561 F8W7U3;J3KP36;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1;Q641Q2;A0A087WYF6;Q5SRD0 F8W7U3 1037 1059 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21C;WASH complex subunit FAM21A;Putative WASH complex subunit FAM21 yes no 2 8.8705E-05 36.77 By MS/MS 1 1.1449 1.1505 NaN 1 Median 1.1449 1.1505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1363100 663850 699270 1363100 663850 699270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10647 143 11078 52811 52922;52923 52923 2 GEADRDTYRR RPKGLEGERPARLTRGEADRDTYRRSAVPP ARLTRGEADRDTYRRSAVPPGADKKAEAGA R G E R R S 1 3 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 10 2 1237.58 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A1W2PQS6;S4R435 P46783 120 129 RPS10;RPS10-NUDT3 40S ribosomal protein S10 no no 3 0.0037238 42.718 By MS/MS By MS/MS 1 1 1.1537 1.1794 20.503 2 Median NaN NaN NaN 0 0 Median 1.1192 1.3634 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1892 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3012300 1402800 1609500 0 0 0 2367100 1115400 1251700 0 0 0 645200 287340 357860 0 0 0 0 0 0 10648 2346;345 11079 52812;52813 52924;52925;52926;52927;52928;52929;52930;52931;52932;52933 52930 10 GEAGQNLLEMMACDR LIAFQVPRPKIKLIKGEAGQNLLEMMACDR GEAGQNLLEMMACDRLSQSGHMLLNLSRGK K G E D R L 2 1 1 1 1 1 2 2 0 0 2 0 2 0 0 0 0 0 0 0 0 0 15 0 1693.7222 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 336 350 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2 0.00035654 57.836 By matching By MS/MS 1 1 1.1311 1.1029 0.79631 2 Median NaN NaN NaN 0 0 Median 1.2651 1.0967 NaN 1 0 Median 1.0112 1.1091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3403000 1643900 1759000 0 0 0 340310 147850 192460 3062600 1496100 1566600 0 0 0 0 0 0 0 0 0 10649 2401;525 11080 52814;52815 52934;52935 52935 2 GEAGVPAEFSIWTR GGAHKVRAGGPGLERGEAGVPAEFSIWTRE RGEAGVPAEFSIWTREAGAGGLSIAVEGPS R G E T R E 2 1 0 0 0 0 2 2 0 1 0 0 0 1 1 1 1 1 0 1 0 0 14 0 1518.7467 O75369;E7EN95 O75369 2206 2219 FLNB Filamin-B yes no 2 1.2687E-07 112.13 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 4 1 1 1.0307 0.96285 42.38 10 Median 1.0288 0.96908 3.8553 3 0 Median 1.0457 0.85939 NaN 1 0 Median 0.80552 0.87181 71.27 4 0 Median 1.2227 1.0713 NaN 1 0 Median 1.1866 1.2411 NaN 1 0 Median NaN NaN NaN 0 0 Median 70083000 33800000 36283000 50051000 24042000 26009000 8177800 3782500 4395300 9484300 5027900 4456400 526770 248740 278030 1843500 698870 1144600 0 0 0 10650 1664 11081 52816;52817;52818;52819;52820;52821;52822;52823;52824;52825 52936;52937;52938;52939;52940;52941;52942;52943;52944;52945;52946 52939 11 GEALSALDSK VQRIMVANIEEVLQRGEALSALDSKANNLS EVLQRGEALSALDSKANNLSSLSKKYRQDA R G E S K A 2 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 989.50294 O75396 O75396 160 169 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.0026978 72.643 By MS/MS By MS/MS 1 1 2.5015 2.083 15.119 2 Median NaN NaN NaN 0 0 Median 2.2353 1.8718 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.7994 2.318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11825000 3718300 8107000 0 0 0 9473800 3092500 6381300 0 0 0 2351500 625780 1725700 0 0 0 0 0 0 10651 1669 11082 52826;52827 52947;52948 52947 2 GEATVSFDDPPSAK PMINLYTDRETGKLKGEATVSFDDPPSAKA KGEATVSFDDPPSAKAAIDWFDGKEFSGNP K G E A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 1 2 2 1 0 0 1 0 0 14 0 1419.6518 H3BPE7;P35637;Q92804;A0A075B7D9 H3BPE7 336 349 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 2 5.0227E-09 122.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 5 3 0.8962 0.77701 32.094 18 Median 1.6337 1.516 86.618 2 0 Median 0.97257 0.83269 NaN 1 0 Median 0.74075 0.74636 12.632 3 0 Median 0.92225 0.79931 13.736 5 0 Median 0.70975 0.69577 6.2472 4 1 Median 0.99047 0.80779 4.984 3 0 Plateau 431120000 233990000 197130000 22948000 11998000 10950000 2613100 1313800 1299300 119050000 66948000 52106000 45021000 22167000 22854000 205810000 114450000 91365000 35671000 17118000 18552000 10652 1221;3559 11083 52828;52829;52830;52831;52832;52833;52834;52835;52836;52837;52838;52839;52840;52841;52842;52843;52844;52845;52846;52847 52949;52950;52951;52952;52953;52954;52955;52956;52957;52958;52959;52960;52961;52962;52963;52964;52965;52966;52967;52968;52969;52970;52971;52972;52973;52974;52975;52976;52977;52978;52979;52980;52981;52982 52953 34 GEAVGSITQPLPSSYLIIR FHPLEQSIWAVKGPKGEAVGSITQPLPSSY GSITQPLPSSYLIIRATSESDGRCWMDALE K G E I R A 1 1 0 0 0 1 1 2 0 3 2 0 0 0 2 3 1 0 1 1 0 0 19 0 2000.0942 F8VUA7;F8VQX7;Q9BZF1 F8VUA7 203 221 OSBPL8 Oxysterol-binding protein;Oxysterol-binding protein-related protein 8 yes no 2 0.00015436 40.577 By MS/MS By matching 1 1 0.83535 0.77723 17.47 2 Median 0.69929 0.68691 NaN 1 0 Median 0.99788 0.87943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2894900 1604700 1290200 2423400 1437800 985600 471500 166920 304580 0 0 0 0 0 0 0 0 0 0 0 0 10653 1061 11084 52848;52849 52983;52984 52983 2 GEAVLRPGLDAEPELSPEEQR LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL PGLDAEPELSPEEQRVLERKLKKERKKEER K G E Q R V 2 2 0 1 0 1 5 2 0 0 3 0 0 0 3 1 0 0 0 1 0 0 21 1 2291.1394 C9JQV0;Q9BRJ6 C9JQV0 44 64 C7orf50 Uncharacterized protein C7orf50 yes no 3 1.0332E-07 62.19 By MS/MS By MS/MS By MS/MS 1 1 2 0.69956 0.60847 10.498 4 Median 0.51996 0.5558 NaN 1 1 Median 0.65849 0.55923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76964 0.66833 1.3346 2 0 Median 14167000 9984400 4183000 8431300 6670700 1760600 2336700 1382300 954460 0 0 0 0 0 0 0 0 0 3399400 1931500 1467900 10654 718 11085 52850;52851;52852;52853 52985;52986;52987 52985 3 GEAVQEELLK ELGIEICLMYIEIEKGEAVQEELLKGLDNK IEIEKGEAVQEELLKGLDNKNPKIIVACIE K G E L K G 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1114.587 Q14008;E9PQH5 Q14008 122 131 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00047594 110.87 By matching By MS/MS By MS/MS 1 2 1 0.99548 0.94575 22.841 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0065 1.12 NaN 1 0 Median 1.0769 0.94575 9.6198 2 1 Median NaN NaN NaN 0 0 Median 0.77221 0.66177 NaN 1 0 Median 21488000 9574100 11913000 0 0 0 0 0 0 6240100 2128800 4111200 13515000 6405300 7109700 0 0 0 1732400 1039900 692500 10655 2850 11086 52854;52855;52856;52857 52988;52989;52990;52991 52989 4 GEDEEENNLEVR PELEARLAHLGVQVKGEDEEENNLEVRETK QVKGEDEEENNLEVRETKIKGKSGRFFTVK K G E V R E 0 1 2 1 0 0 5 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1431.6114 P04843;F8WF32 P04843 90 101 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 1.589E-40 217.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.2296 1.0397 5.3251 6 Median 1.0757 1.0127 NaN 1 0 Median 1.2296 1.0397 0.56292 2 0 Median 0.97387 0.991 NaN 1 0 Median 1.2953 1.0888 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4154 1.1483 NaN 1 1 Median 109290000 48222000 61070000 35377000 16542000 18834000 49375000 21248000 28127000 12171000 5396200 6774500 11828000 4825000 7003100 0 0 0 540740 210040 330700 10656 1853 11087 52858;52859;52860;52861;52862;52863 52992;52993;52994;52995;52996;52997;52998;52999;53000;53001;53002 52996 11 GEDFPANNIVK PEASPSADTTILFVKGEDFPANNIVKFLVG LFVKGEDFPANNIVKFLVGFTNKGTEDFIV K G E V K F 1 0 2 1 0 0 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1202.5932 C9J3L8;C9J5W0;A0A3B3IRT8;E9PAL7;C9IZQ1;P43307 C9J3L8 92 102 SSR1 Translocon-associated protein subunit alpha yes no 2 0.0025774 52.716 By matching By MS/MS By MS/MS 1 1 1 1.0712 1.0073 9.8384 3 Median 1.0712 0.97203 NaN 1 0 Median 1.3914 1.1701 NaN 1 0 Median 1.0487 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45740000 20722000 25019000 29965000 13659000 16306000 9047700 3938700 5109100 6727900 3124300 3603600 0 0 0 0 0 0 0 0 0 10657 417 11088 52864;52865;52866 53003;53004;53005 53005 3 GEDFYCVTCHETK SNCKQVIGTGSFFPKGEDFYCVTCHETKFA PKGEDFYCVTCHETKFAKHCVKCNKAITSG K G E T K F 0 0 0 1 2 0 2 1 1 0 0 1 0 1 0 0 2 0 1 1 0 0 13 0 1644.6548 Q5JXI8 Q5JXI8 145 157 FHL1 no no 2;3 1.0211E-06 113.47 By MS/MS 3 1.2557 1.0531 22.352 3 Plateau NaN NaN NaN 0 0 Median 1.2557 1.0531 22.352 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42954000 19268000 23687000 0 0 0 42954000 19268000 23687000 0 0 0 0 0 0 0 0 0 0 0 0 10658 3060 11089 52867;52868;52869 53006;53007;53008;53009 53007 4 GEDLTEEEDGGIIR PNATLVFEVELFEFKGEDLTEEEDGGIIRR KGEDLTEEEDGGIIRRIQTRGEGYAKPNEG K G E I R R 0 1 0 2 0 0 4 3 0 2 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1531.7002 Q02790 Q02790 139 152 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.00041981 70.977 By MS/MS By MS/MS 1 1 0.94527 0.80605 0.7883 2 Median NaN NaN NaN 0 0 Median 0.94591 0.80157 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94462 0.81055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7893700 3969100 3924600 0 0 0 5198200 2650800 2547300 0 0 0 2695600 1318300 1377200 0 0 0 0 0 0 10659 2701 11090 52870;52871 53010;53011;53012 53012 3 GEDNIDFMPTILSR LAAANSVFGRWDETKGEDNIDFMPTILSRF KGEDNIDFMPTILSRFDMIFIVKDEHNEER K G E S R F 0 1 1 2 0 0 1 1 0 2 1 0 1 1 1 1 1 0 0 0 0 0 14 0 1606.7661 P33992;B1AHB1 P33992 500 513 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.0010403 51.092 By MS/MS By matching By MS/MS 6 2 2 0.7873 0.7476 33.427 10 Median 0.77708 0.73692 11.657 6 0 Median 0.91809 0.78493 5.3378 2 0 Median 0.53651 0.58316 89.455 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19520000 10822000 8698100 13104000 7030100 6073500 445910 193630 252280 5970700 3598400 2372300 0 0 0 0 0 0 0 0 0 10660 2224 11091 52872;52873;52874;52875;52876;52877;52878;52879;52880;52881 53013;53014;53015;53016;53017;53018 53018 6 GEDQSELVTTVDK TWILSSNKDVGIWLKGEDQSELVTTVDKVV LKGEDQSELVTTVDKVVCLESAHPRMGVGC K G E D K V 0 0 0 2 0 1 2 1 0 0 1 1 0 0 0 1 2 0 0 2 0 0 13 0 1419.6729 Q8NC56;H7C2Z0;D6R958 Q8NC56 340 352 LEMD2 LEM domain-containing protein 2 yes no 2 0.00010955 84.658 By MS/MS By matching 1 1 1.1005 0.98377 6.4294 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0799 1.0295 NaN 1 0 Median 1.1215 0.94005 NaN 1 0 Median 5654500 2451300 3203200 0 0 0 0 0 0 0 0 0 0 0 0 3932000 1778200 2153800 1722500 673120 1049400 10661 3415 11092 52882;52883 53019 53019 1 GEDSVPDTVHHVVVPVNPK LSEKIMHFPTWVDLKGEDSVPDTVHHVVVP VPDTVHHVVVPVNPKTDRLWERLGKSHIRT K G E P K T 0 0 1 2 0 0 1 1 2 0 0 1 0 0 3 1 1 0 0 6 0 0 19 0 2024.0327 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 352 370 DDX1 ATP-dependent RNA helicase DDX1 yes no 3;4 1.513E-18 99.451 By MS/MS By MS/MS By MS/MS 1 2 2 0.65907 0.593 63.944 5 Median 0.56759 0.55111 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1562 1.2124 101.13 2 1 Median 0.73525 0.63642 15.356 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49115000 25102000 24012000 3006900 1769400 1237500 0 0 0 26300000 12879000 13421000 19808000 10454000 9353800 0 0 0 0 0 0 10662 135 11093 52884;52885;52886;52887;52888 53020;53021;53022;53023;53024;53025;53026 53026 7 GEEELEK EKCSQSENPSECQDKGEEELEKYIQESQAL NPSECQDKGEEELEKYIQESQALAKRSCGL K G E E K Y 0 0 0 0 0 0 4 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 7 0 832.38143 CON__Q3SZ57 CON__Q3SZ57 398 404 yes yes 2 0.0096554 83.614 By matching By MS/MS 1 1 0.94092 0.93306 9.6842 2 Median NaN NaN NaN 0 0 Median 0.98311 0.87131 NaN 1 0 Median 0.90053 0.9992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2072000 1060700 1011300 0 0 0 536970 267700 269270 1535000 793010 742040 0 0 0 0 0 0 0 0 0 + 10663 778 11094 52889;52890 53027;53028;53029;53030;53031 53030 5 GEEGHDPKEPEQLR PGRPQPDSGRRRRRRGEEGHDPKEPEQLRK RGEEGHDPKEPEQLRKLFIGGLSFETTDDS R G E L R K 0 1 0 1 0 1 4 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 14 1 1619.754 P51991 P51991 22 35 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 0.00046477 48.527 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 4 1 0.87411 0.86085 8.6094 10 Median NaN NaN NaN 0 0 Median 0.93148 0.86866 NaN 1 0 Median 0.72909 0.82777 3.1976 2 0 Median 1.038 0.91599 3.012 2 0 Median 0.80658 0.83742 10.889 4 0 Median 1.0921 1.0014 NaN 1 0 Median 21132000 11790000 9342000 0 0 0 945350 433790 511550 3937600 2121900 1815700 970300 496690 473610 14898000 8542700 6354800 380830 194540 186290 10664 2446 11095 52891;52892;52893;52894;52895;52896;52897;52898;52899;52900 53032;53033;53034;53035;53036;53037;53038;53039;53040 53035 9 GEEGHDPKEPEQLRK PGRPQPDSGRRRRRRGEEGHDPKEPEQLRK GEEGHDPKEPEQLRKLFIGGLSFETTDDSL R G E R K L 0 1 0 1 0 1 4 2 1 0 1 2 0 0 2 0 0 0 0 0 0 0 15 2 1747.8489 P51991 P51991 22 36 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 0.00021073 47.037 By matching By matching By MS/MS By matching 2 2 5 2 0.79836 0.89506 14.604 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78375 0.87868 2.6121 2 0 Median 0.97087 0.97117 2.4447 2 0 Median 0.66934 0.76567 17.691 5 0 Median 1.0687 0.98142 9.3553 2 0 Median 14474000 8525500 5948600 0 0 0 0 0 0 721310 410190 311120 759950 376420 383530 12591000 7534800 5056200 401770 204040 197730 10665 2446 11096 52901;52902;52903;52904;52905;52906;52907;52908;52909;52910;52911 53041;53042;53043;53044 53043 4 GEEILSGAQR PRNPKQSNSYDMFMRGEEILSGAQRIHDPQ DMFMRGEEILSGAQRIHDPQLLTERALHHG R G E Q R I 1 1 0 0 0 1 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1058.5356 P14868;H7BZ35 P14868 422 431 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00011095 122.52 By MS/MS By MS/MS By MS/MS 1 1 1 1.0175 0.85613 24.959 3 Median 0.78772 0.77778 NaN 1 1 Median 1.0175 0.85613 NaN 1 1 Median 1.1819 1.2472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16573000 8384100 8188800 4400000 2327100 2072900 10959000 5487700 5471500 1213700 569340 644330 0 0 0 0 0 0 0 0 0 10666 2012 11097 52912;52913;52914 53045;53046;53047 53047 3 GEELFTGVVPILVELDGDVNGHK ______________________________ VPILVELDGDVNGHKFSVSGEGEGDATYGK K G E H K F 0 0 1 2 0 0 3 4 1 1 3 1 0 1 1 0 1 0 0 4 0 0 23 0 2436.2537 CON__Q9U6Y5 CON__Q9U6Y5 4 26 yes yes 2;3 7.8116E-105 190.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 3 2 1 0.94489 0.87328 63.21 14 Median 0.92336 0.89628 2.0082 2 0 Median 0.92178 0.78347 8.5761 6 2 Median 1.1241 1.0942 5.6595 3 0 Median NaN NaN NaN 0 0 Median 2.4483 2.5309 169.22 2 1 Median 1.8168 1.4898 NaN 1 0 Median 1181000000 583320000 597660000 1239900 596280 643630 1077900000 540100000 537830000 98817000 42235000 56582000 0 0 0 2810200 313070 2497100 180000 77707 102290 + 10667 795 11098 52915;52916;52917;52918;52919;52920;52921;52922;52923;52924;52925;52926;52927;52928 53048;53049;53050;53051;53052;53053;53054;53055;53056;53057;53058;53059 53058 12 GEELGGGQDPVQLLSGFPR REQLAAVRLYVELHRGEELGGGQDPVQLLS GGGQDPVQLLSGFPRRAFSEADMERPLQEL R G E P R R 0 1 0 1 0 2 2 5 0 0 3 0 0 1 2 1 0 0 0 1 0 0 19 0 1954.9749 E9PJ81;E9PRQ7;Q04323;A0A087WTZ5 E9PJ81 248 266 UBXN1 UBX domain-containing protein 1 yes no 2 0.0036949 26.969 By matching By MS/MS 1 1 0.48501 0.43395 64.804 2 Median 0.2932 0.27443 NaN 1 0 Median 0.8023 0.6862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2857400 1826800 1030600 978980 769890 209090 1878400 1056900 821530 0 0 0 0 0 0 0 0 0 0 0 0 10668 942 11099 52929;52930 53060;53061 53060 2 GEELLSPLNLEQAAYAR STLREALTHRKIIAKGEELLSPLNLEQAAY ELLSPLNLEQAAYARDALAKAVYSRTFTWL K G E A R D 3 1 1 0 0 1 3 1 0 0 4 0 0 0 1 1 0 0 1 0 0 0 17 0 1872.9581 F5H6E2;O00159 F5H6E2 338 354 MYO1C Unconventional myosin-Ic yes no 2 0.00025729 46.592 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.80376 0.78445 6.1297 4 Median 0.83955 0.81957 NaN 1 0 Median 0.84834 0.75083 NaN 1 0 Median 0.67789 0.72757 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7695 0.82034 NaN 1 0 Median NaN NaN NaN 0 0 Median 6003600 3332300 2671400 2886300 1584200 1302200 632920 295860 337060 1429900 880010 549850 0 0 0 1054500 572230 482270 0 0 0 10669 1042 11100 52931;52932;52933;52934 53062;53063;53064 53063 3 GEENLMDAQVK TVLIKTAEELMNFSKGEENLMDAQVKAIAD NFSKGEENLMDAQVKAIADTGANVVVTGGK K G E V K A 1 0 1 1 0 1 2 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1232.5707 P50990;H7C4C8 P50990 271 281 CCT8 T-complex protein 1 subunit theta yes no 2 0.00013849 88.496 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2575 1.2087 10.97 5 Median 1.1812 1.1024 NaN 1 0 Median 1.301 1.1006 13.243 2 2 Median 1.2575 1.24 NaN 1 0 Median 1.5485 1.3289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67306000 29785000 37521000 22831000 10372000 12458000 33520000 14422000 19098000 7749300 3652700 4096600 3206800 1337700 1869100 0 0 0 0 0 0 10670 2423 11101 52935;52936;52937;52938;52939 53065;53066;53067;53068;53069;53070 53065 6 GEEVDVAR ALPESLGQHALRSAKGEEVDVARAERQHQL HALRSAKGEEVDVARAERQHQLYVGVLGSK K G E A R A 1 1 0 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 8 0 873.41921 O94760 O94760 35 42 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 2 0.0078694 65.252 By MS/MS By MS/MS 1 1 1.0818 0.97897 16.939 2 Median 1.1417 1.1035 NaN 1 0 Median 1.0251 0.86847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2104400 1008800 1095600 977740 487350 490390 1126600 521440 605200 0 0 0 0 0 0 0 0 0 0 0 0 10671 1722 11102 52940;52941 53071;53072;53073 53072 3 GEEVGELSR LDLLEILRQEKGGSRGEEVGELSRGKLYSL EKGGSRGEEVGELSRGKLYSLGNGRWMLTL R G E S R G 0 1 0 0 0 0 3 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 974.46689 P09543 P09543 361 369 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.0058853 56.258 By MS/MS 2 1.5174 1.5152 104.02 2 Median 1.5174 1.5152 104.02 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4082300 1917500 2164800 4082300 1917500 2164800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10672 1918 11103 52942;52943 53074 53074 1 GEEVTLSNPK LVSQELQRADLGLWRGEEVTLSNPKGSQEG LGLWRGEEVTLSNPKGSQEGTKYIQNLQGL R G E P K G 0 0 1 0 0 0 2 1 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1072.5401 Q14669 Q14669 1652 1661 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0070645 48.283 By MS/MS 1 0.74878 0.8308 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74878 0.8308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1503800 707990 795780 0 0 0 0 0 0 1503800 707990 795780 0 0 0 0 0 0 0 0 0 10673 2886 11104 52944 53075 53075 1 GEFDPGQDTYQHPPK KKFRLEAPDADELPKGEFDPGQDTYQHPPK GEFDPGQDTYQHPPKDSSGQHVDVSPTSQR K G E P K D 0 0 0 2 0 2 1 2 1 0 0 1 0 1 3 0 1 0 1 0 0 0 15 0 1714.7587 A2A274;Q99798 A2A274 560 574 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 0.00022012 45.864 By MS/MS By matching 2 1 1.1009 0.98286 5.438 3 Median NaN NaN NaN 0 0 Median 1.0884 0.96255 2.9534 2 0 Median NaN NaN NaN 0 0 Median 1.2072 1.05 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6087000 2833100 3253900 0 0 0 5089600 2390200 2699400 0 0 0 997370 442900 554470 0 0 0 0 0 0 10674 495 11105 52945;52946;52947 53076;53077;53078;53079 53076 4 GEFEAGFETGGQTR AAQADVAVLVVDASRGEFEAGFETGGQTRE RGEFEAGFETGGQTREHGLLVRSLGVTQLA R G E T R E 1 1 0 0 0 1 3 4 0 0 0 0 0 2 0 0 2 0 0 0 0 0 14 0 1484.6532 B7Z524;H0YDX7;J3QT46;Q9Y450;E9PHZ9 B7Z524 210 223 HBS1L HBS1-like protein yes no 2 5.7388E-05 91.855 By MS/MS By MS/MS 3 1 1.1017 1.079 11.85 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3028 1.0645 14.207 3 2 Plateau 1.2669 1.0936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11703000 5591300 6111500 0 0 0 0 0 0 10458000 5076100 5381700 1244900 515140 729760 0 0 0 0 0 0 10675 632 11106 52948;52949;52950;52951 53080;53081;53082;53083 53081 4 GEFEGFVAVVNK YIGFIESYRDPFGSRGEFEGFVAVVNKAMS GSRGEFEGFVAVVNKAMSAKFERLVASAEQ R G E N K A 1 0 1 0 0 0 2 2 0 0 0 1 0 2 0 0 0 0 0 3 0 0 12 0 1294.6558 G3V1D3;G3V180;Q9NY33 G3V1D3 345 356 DPP3 Dipeptidyl peptidase 3 yes no 2 0.0011286 56.729 By MS/MS 1 1.1219 1.0179 NaN 1 Median 1.1219 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11646000 5233500 6412400 11646000 5233500 6412400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10676 1102 11107 52952 53084;53085 53084 2 GEFGDVMLGDYR ALNMKELKLLQTIGKGEFGDVMLGDYRGNK IGKGEFGDVMLGDYRGNKVAVKCIKNDATA K G E Y R G 0 1 0 2 0 0 1 3 0 0 1 0 1 1 0 0 0 0 1 1 0 0 12 0 1357.5973 P41240 P41240 204 215 CSK Tyrosine-protein kinase CSK yes yes 2 0.00082411 60.434 By matching By matching By MS/MS By matching 1 1 1 2 1.094 1.0737 8.9643 5 Median 1.0806 1.0737 NaN 1 0 Median 1.094 0.93465 NaN 1 0 Median 1.0672 1.0635 NaN 1 0 Median 1.3218 1.1612 2.3412 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12274000 5846500 6427300 1637900 784380 853530 3208300 1576400 1631900 6743400 3212800 3530600 684150 272880 411270 0 0 0 0 0 0 10677 2300 11108 52953;52954;52955;52956;52957 53086 53086 1 GEFGGFGSVSGK NDDAQFDASHYDSEKGEFGGFGSVSGKIEI SEKGEFGGFGSVSGKIEIEIKINHEGEVNR K G E G K I 0 0 0 0 0 0 1 5 0 0 0 1 0 2 0 2 0 0 0 1 0 0 12 0 1127.5247 Q09028;C9JPP3 Q09028 103 114 RBBP4 Histone-binding protein RBBP4 yes no 2 0.00062624 65.5 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 3 3 3 1.1628 1.1763 22.099 11 Median 1.3129 1.2305 NaN 1 0 Median 0.86323 0.75566 NaN 1 0 Median 1.0758 1.0747 8.8683 3 0 Median 1.4464 1.2405 15.815 3 0 Median 1.1843 1.1763 28.464 3 0 Median NaN NaN NaN 0 0 Median 167420000 79145000 88273000 7067800 2920400 4147400 213980 101960 112020 89410000 42991000 46419000 45038000 20935000 24103000 25688000 12196000 13492000 0 0 0 10678 2746 11109 52958;52959;52960;52961;52962;52963;52964;52965;52966;52967;52968 53087;53088;53089;53090;53091;53092;53093;53094 53087 8 GEFGGFGSVTGK NDDAQFDASHCDSDKGEFGGFGSVTGKIEC SDKGEFGGFGSVTGKIECEIKINHEGEVNR K G E G K I 0 0 0 0 0 0 1 5 0 0 0 1 0 2 0 1 1 0 0 1 0 0 12 0 1141.5404 Q16576;Q5JP01 Q16576 102 113 RBBP7 Histone-binding protein RBBP7 yes no 2 0.00062624 65.5 By MS/MS 1 1.0013 0.96877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0013 0.96877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11643000 5906300 5736800 0 0 0 0 0 0 11643000 5906300 5736800 0 0 0 0 0 0 0 0 0 10679 2990 11110 52969 53095 53095 1 GEFGVYLVSDGSSRPYR QVPPGATYTAIEAPKGEFGVYLVSDGSSRP FGVYLVSDGSSRPYRCKIKAPGFAHLAGLD K G E Y R C 0 2 0 1 0 0 1 3 0 0 1 0 0 1 1 3 0 0 2 2 0 0 17 1 1887.9115 O75306 O75306 405 421 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2;3 0.0030631 39.266 By MS/MS By matching 4 1 1.081 1.0916 40.812 5 Median 1.23 1.2679 45.8 4 0 Median NaN NaN NaN 0 0 Median 0.979 1.06 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23124000 11391000 11733000 18831000 9085800 9744700 0 0 0 4293100 2305200 1987900 0 0 0 0 0 0 0 0 0 10680 1657 11111 52970;52971;52972;52973;52974 53096;53097;53098 53096 3 GEFKDEEETVTTK DSDEEKKARRGRSPKGEFKDEEETVTTKHI PKGEFKDEEETVTTKHIHITQATETTTTRH K G E T K H 0 0 0 1 0 0 4 1 0 0 0 2 0 1 0 0 3 0 0 1 0 0 13 1 1511.6991 Q14677 Q14677 248 260 CLINT1 Clathrin interactor 1 yes yes 2;3 0.013769 42.21 By MS/MS By MS/MS By matching By matching 4 2 1 2 0.95126 0.89799 11.273 9 Median 0.94746 0.90154 17.122 4 0 Median 0.99404 0.93103 8.0513 2 0 Median 0.86919 0.98862 NaN 1 0 Median 0.99485 0.89579 0.34702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17612000 8584500 9027300 6812600 3282700 3529900 6969300 3481200 3488100 2318400 1124800 1193600 1511500 695850 815660 0 0 0 0 0 0 10681 2888 11112 52975;52976;52977;52978;52979;52980;52981;52982;52983 53099;53100;53101 53099 3 GEFTIETEGK DECYITEMEMLLNEKGEFTIETEGKTFQLT LLNEKGEFTIETEGKTFQLTKDMINVKRFQ K G E G K T 0 0 0 0 0 0 3 2 0 1 0 1 0 1 0 0 2 0 0 0 0 0 10 0 1109.5241 P41250;H7C443 P41250 538 547 GARS Glycine--tRNA ligase yes no 2 0.00036244 122.13 By MS/MS By MS/MS By matching 1 1 1 1.0838 0.94694 25.701 3 Median 1.1397 1.0445 NaN 1 0 Median 1.0838 0.94694 NaN 1 0 Median 0.63755 0.64247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18543000 8602100 9941400 7903000 3704900 4198100 8456300 3925100 4531200 2184100 972120 1212000 0 0 0 0 0 0 0 0 0 10682 2301 11113 52984;52985;52986 53102;53103;53104;53105 53102 4 GEFVTTVQQR EVGVYEALKDDSWLKGEFVTTVQQRGAAVI DSWLKGEFVTTVQQRGAAVIKARKLSSAMS K G E Q R G 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 2 0 0 2 0 0 10 0 1163.5935 P40925;B9A041;B8ZZ51 P40925 221 230 MDH1 Malate dehydrogenase, cytoplasmic yes no 2 5.3706E-06 155.1 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1833 1.0696 11.311 6 Median 1.0941 1.0525 3.7479 2 0 Median 1.4282 1.2112 19.051 2 0 Median 1.0655 1.0363 NaN 1 0 Median 1.3684 1.1417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 321050000 143390000 177650000 135660000 63195000 72467000 152430000 64807000 87622000 19580000 9456500 10124000 13377000 5934800 7441800 0 0 0 0 0 0 10683 2291 11114 52987;52988;52989;52990;52991;52992 53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118 53114 13 GEGAEPQYVDK LREKLKEEENTVGRRGEGAEPQYVDKFGFH VGRRGEGAEPQYVDKFGFHTVTCCGFIPQV R G E D K F 1 0 0 1 0 1 2 2 0 0 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1191.5408 Q9H479 Q9H479 132 142 FN3K Fructosamine-3-kinase yes yes 2 0.041741 27.303 By matching By MS/MS 1 1 1.0643 0.93488 4.3138 2 Median NaN NaN NaN 0 0 Median 1.0063 0.90679 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1256 0.96383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1316700 585470 731190 0 0 0 802940 403450 399490 0 0 0 513710 182020 331700 0 0 0 0 0 0 10684 3962 11115 52993;52994 53119 53119 1 GEGAGQPSTSAQGQPAAPAPQKR ______________________________ TSAQGQPAAPAPQKRGRGRPRKQQQEPTGE R G E K R G 5 1 0 0 0 4 1 4 0 0 0 1 0 0 4 2 1 0 0 0 0 0 23 1 2190.0778 F5H2U8;F5H2A4;P52926;F5H6H0 F5H2U8 5 27 HMGA2 High mobility group protein HMGI-C yes no 3 0.0078454 20.075 By MS/MS By MS/MS By matching 2 1 2 0.46321 0.48687 17.118 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45353 0.4728 4.1474 2 0 Median 0.76518 0.67734 NaN 1 0 Median 0.49855 0.54094 17.048 2 0 Median NaN NaN NaN 0 0 Median 6033700 3795700 2238000 0 0 0 0 0 0 4273700 2780600 1493200 460750 238780 221960 1299200 776390 522840 0 0 0 10685 1025 11116 52995;52996;52997;52998;52999 53120;53121;53122;53123;53124 53121 5 GEGGEFSVDR RPPRERRFEKPLEEKGEGGEFSVDRPIIDR PLEEKGEGGEFSVDRPIIDRPIRGRGGLGR K G E D R P 0 1 0 1 0 0 2 3 0 0 0 0 0 1 0 1 0 0 0 1 0 0 10 0 1051.4571 Q8NC51 Q8NC51 146 155 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0034092 72.643 By MS/MS 2 0.44219 0.37905 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44219 0.37905 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4419100 3401800 1017200 0 0 0 0 0 0 0 0 0 4419100 3401800 1017200 0 0 0 0 0 0 10686 3414 11117 53000;53001 53125;53126 53126 2 GEGGEFSVDRPIIDR RPPRERRFEKPLEEKGEGGEFSVDRPIIDR GEGGEFSVDRPIIDRPIRGRGGLGRGRGGR K G E D R P 0 2 0 2 0 0 2 3 0 2 0 0 0 1 1 1 0 0 0 1 0 0 15 1 1645.806 Q8NC51 Q8NC51 146 160 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.0076361 37.156 By MS/MS 2 0.74558 0.68598 5.5068 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74558 0.68598 5.5068 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3760100 2159500 1600600 0 0 0 0 0 0 0 0 0 3760100 2159500 1600600 0 0 0 0 0 0 10687 3414 11118 53002;53003 53127;53128 53128 2 GEGGILINSQGER TGIYGAGCLITEGCRGEGGILINSQGERFM CRGEGGILINSQGERFMERYAPVAKDLASR R G E E R F 0 1 1 0 0 1 2 4 0 2 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1328.6684 P31040;D6RFM5;A0A087X1I3;A0A494C1T6 P31040 313 325 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 7.8068E-10 169.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.4791 1.3848 25.819 5 Median 1.0507 0.99018 NaN 1 0 Median 1.6245 1.3931 12.4 2 1 Median 1.3535 1.3848 NaN 1 0 Median 2.4089 2.011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98519000 41193000 57326000 30684000 14682000 16002000 58872000 22725000 36148000 7462300 3331400 4130900 1500200 454250 1045900 0 0 0 0 0 0 10688 2200 11119 53004;53005;53006;53007;53008 53129;53130;53131;53132;53133;53134;53135;53136;53137 53134 9 GEGGTTNPHIFPEGSEPK AQALSVSIQVEYMDRGEGGTTNPHIFPEGS GTTNPHIFPEGSEPKVYLLYRPGHYDILYK R G E P K V 0 0 1 0 0 0 3 4 1 1 0 1 0 1 3 1 2 0 0 0 0 0 18 0 1852.8592 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5H3F0 J3KR44 240 257 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2;3 2.5816E-06 61.641 By MS/MS By MS/MS By MS/MS 1 3 1 0.75526 0.63595 16.077 5 Median 0.66446 0.62296 NaN 1 0 Median 0.75526 0.63595 5.806 3 2 Median 0.91243 0.87689 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33256000 18315000 14941000 7044600 3680000 3364600 19017000 11017000 7999900 7194700 3618500 3576200 0 0 0 0 0 0 0 0 0 10689 1322 11120 53009;53010;53011;53012;53013 53138;53139;53140;53141;53142;53143;53144 53142 7 GEGLPNFDNNNIK SRDKITRPGAKLWKKGEGLPNFDNNNIKGS KKGEGLPNFDNNNIKGSLIITFDVDFPKEQ K G E I K G 0 0 4 1 0 0 1 2 0 1 1 1 0 1 1 0 0 0 0 0 0 0 13 0 1430.679 Q9UBS4;H7C2Y5 Q9UBS4 303 315 DNAJB11 DnaJ homolog subfamily B member 11 yes no 2 5.3333E-05 87.806 By matching By MS/MS By matching 1 1 1 1.2156 1.0266 5.6315 3 Median NaN NaN NaN 0 0 Median 1.3078 1.1192 NaN 1 0 Median 0.97447 1.0068 NaN 1 0 Median 1.2156 1.0266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17190000 7896400 9293900 0 0 0 955400 569050 386350 14487000 6651800 7835600 1747400 675510 1071900 0 0 0 0 0 0 10690 4246 11121 53014;53015;53016 53145;53146 53146 2 GEGLQLMNLMLR CSCLMLSSNRERFLKGEGLQLMNLMLREKK FLKGEGLQLMNLMLREKKISRSSALKVLDH K G E L R E 0 1 1 0 0 1 1 2 0 0 4 0 2 0 0 0 0 0 0 0 0 0 12 0 1373.7159 Q8WYA6;A0A087WUB9 Q8WYA6 333 344 CTNNBL1 Beta-catenin-like protein 1 yes no 2 5.2899E-06 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 3 3 1.1603 1.0983 11.401 14 Median 1.2237 1.175 NaN 1 0 Median 1.3051 1.1417 14.702 2 0 Median 1.1112 1.1473 12.215 4 0 Median 1.3293 1.1199 NaN 1 0 Median 1.1149 1.1349 14.436 3 0 Median 1.1574 1.0111 6.104 3 0 Median 39334000 18152000 21182000 7266800 3184500 4082300 6695300 2893300 3802000 22865000 10864000 12001000 546700 232640 314060 1580100 806720 773360 380030 170570 209460 10691 28 11122;11123 53017;53018;53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030 53147;53148;53149;53150;53151;53152;53153;53154;53155;53156 53150 10 10 GEGLVGDGPVDMR GLLRATEATAMAMGRGEGLVGDGPVDMRTS GRGEGLVGDGPVDMRTSHSDMKSERRPPSP R G E M R T 0 1 0 2 0 0 1 4 0 0 1 0 1 0 1 0 0 0 0 2 0 0 13 0 1300.6082 Q86YP4;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4 74 86 GATAD2A Transcriptional repressor p66-alpha yes no 2 0.0069186 51.927 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 0.74747 0.72164 16.685 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70487 0.72842 1.6591 2 1 Median 0.78968 0.66971 17.666 4 2 Median 0.90275 0.92672 NaN 1 1 Median 0.75233 0.61845 NaN 1 0 Median 31904000 17469000 14435000 0 0 0 0 0 0 16607000 9374100 7233100 6252200 3525400 2726800 8449700 4252900 4196800 595260 316830 278430 10692 3309 11124;11125 53031;53032;53033;53034;53035;53036;53037;53038 53157;53158;53159;53160;53161;53162 53157 1708 6 GEGPDVDVNLPK MPKIKMPKISMPGFKGEGPDVDVNLPKADI GFKGEGPDVDVNLPKADIDVSGPKVDVECP K G E P K A 0 0 1 2 0 0 1 2 0 0 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1238.6143 Q09666 Q09666 2781 2792 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 4.277E-05 95.642 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 0.92059 0.86231 22.647 8 Median 0.77302 0.77628 NaN 1 0 Median 0.96145 0.86174 NaN 1 0 Median 1.0842 1.1784 39.896 2 1 Median 0.92215 0.86155 7.4091 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 273950000 141200000 132750000 49210000 25874000 23336000 73617000 36310000 37307000 67492000 36109000 31383000 83630000 42911000 40719000 0 0 0 0 0 0 10693 2749 11126 53039;53040;53041;53042;53043;53044;53045;53046 53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182 53175 20 GEGPDVDVSLPK MPKVKMPKFSMPGFKGEGPDVDVSLPKADI GFKGEGPDVDVSLPKADIDVSGPKVDVDIP K G E P K A 0 0 0 2 0 0 1 2 0 0 1 1 0 0 2 1 0 0 0 2 0 0 12 0 1211.6034 Q09666 Q09666 4795 4806 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00048458 77.379 By matching By MS/MS 1 2 0.6884 0.63023 18.374 2 Median NaN NaN NaN 0 0 Median 0.59468 0.55344 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79689 0.71767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12015000 5545200 6469900 0 0 0 5976500 2992800 2983700 0 0 0 6038600 2552300 3486300 0 0 0 0 0 0 10694 2749 11127 53047;53048;53049 53183;53184;53185 53184 3 GEGPDVDVTLPK MPKVKMPKFSMPGFKGEGPDVDVTLPKADI GFKGEGPDVDVTLPKADIEISGPKVDIDAP K G E P K A 0 0 0 2 0 0 1 2 0 0 1 1 0 0 2 0 1 0 0 2 0 0 12 0 1225.619 Q09666 Q09666 4331 4342 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00032936 81.865 By matching By MS/MS By MS/MS 1 2 1 1.0129 0.89729 51.378 4 Median 2.4588 2.4572 NaN 1 0 Median 1.0129 0.88667 5.8664 2 2 Median NaN NaN NaN 0 0 Median 0.89138 0.87115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24615000 11954000 12661000 7393300 3188200 4205100 12704000 6536600 6167400 0 0 0 4517900 2229600 2288300 0 0 0 0 0 0 10695 2749 11128 53050;53051;53052;53053 53186;53187;53188;53189;53190 53190 5 GEGPDVHMTLPK MPKMKMPTFSTPGAKGEGPDVHMTLPKGDI GAKGEGPDVHMTLPKGDISISGPKVNVEAP K G E P K G 0 0 0 1 0 0 1 2 1 0 1 1 1 0 2 0 1 0 0 1 0 0 12 0 1279.6231 Q09666 Q09666 643 654 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00027385 65.056 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 4 1 0.88097 0.89679 25.021 10 Median 0.90041 0.90148 0.56307 2 0 Median 1.1756 1.0346 NaN 1 1 Median 0.90484 0.96647 10.758 2 0 Median 0.84359 0.8618 7.4189 4 0 Linear 1.6678 1.7472 NaN 1 0 Median NaN NaN NaN 0 0 Median 74818000 38559000 36259000 20882000 10277000 10604000 8667600 3930300 4737300 30985000 16895000 14090000 13133000 6810800 6322500 1150900 645540 505310 0 0 0 10696 2749 11129 53054;53055;53056;53057;53058;53059;53060;53061;53062;53063 53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206 53202 16 GEGPEFDVNLSK MPKIKMPKFSMPSLKGEGPEFDVNLSKANV SLKGEGPEFDVNLSKANVDISAPKVDTNAP K G E S K A 0 0 1 1 0 0 2 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 12 0 1290.6092 Q09666 Q09666 1013 1024 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 4.7077E-06 125.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.0062 0.97479 11.182 7 Median 0.85814 0.86058 NaN 1 0 Median 1.1355 1.0069 12.546 2 0 Median 1.0234 1.1157 0.68589 2 0 Median 0.98317 0.93386 6.066 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80032000 39901000 40130000 14735000 7452800 7282000 17168000 8282400 8885100 28242000 14389000 13852000 19888000 9777200 10111000 0 0 0 0 0 0 10697 2749 11130 53064;53065;53066;53067;53068;53069;53070 53207;53208;53209;53210;53211;53212;53213;53214;53215;53216 53210 10 GEGPEVDMNLPK MPKVKMPKFSMPGFKGEGPEVDMNLPKADL GFKGEGPEVDMNLPKADLGVSGPKVDIDVP K G E P K A 0 0 1 1 0 0 2 2 0 0 1 1 1 0 2 0 0 0 0 1 0 0 12 0 1284.602 Q09666 Q09666 1525 1536 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00039479 79.974 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 0.85924 0.83938 35.681 6 Median 0.72015 0.71999 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80479 0.8602 NaN 1 0 Median 0.89072 0.88993 12.435 3 0 Plateau 1.74 1.8401 NaN 1 0 Median NaN NaN NaN 0 0 Median 39955000 21017000 18938000 7623700 4414100 3209600 0 0 0 12452000 6728600 5723300 18148000 9410200 8737900 1730900 463740 1267200 0 0 0 10698 2749 11131 53071;53072;53073;53074;53075;53076 53217;53218;53219;53220;53221;53222 53222 6 GEGPEVDVK MPKVKMPKFSMPGFKGEGPEVDVKLPKADV SMPGFKGEGPEVDVKLPKADVDVSGPKMDA K G E V K L 0 0 0 1 0 0 2 2 0 0 0 1 0 0 1 0 0 0 0 2 0 0 9 0 928.45018 Q09666 Q09666 1397 1405 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0054507 57.59 By MS/MS 1 0.9516 0.92425 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9516 0.92425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3330500 1581400 1749200 0 0 0 0 0 0 0 0 0 3330500 1581400 1749200 0 0 0 0 0 0 10699 2749 11132 53077 53223;53224 53224 2 GEGPEVDVNLPK IPKMKMPKFSMPSLKGEGPEVDVNLPKADV SLKGEGPEVDVNLPKADVVVSGPKVDIEAP K G E P K A 0 0 1 1 0 0 2 2 0 0 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1252.6299 Q09666 Q09666 1141 1152 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 3.2995E-05 96.342 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 5 1 1 0.95326 0.85741 17.329 11 Median 0.7449 0.74809 NaN 1 0 Median 0.98517 0.87827 11.687 2 0 Median 0.80677 0.85741 NaN 1 0 Median 1.0239 0.91594 15.908 5 2 Median 1.2439 1.3018 NaN 1 1 Median 0.95326 0.8168 NaN 1 0 Median 392720000 204510000 188210000 51664000 28776000 22888000 90338000 45646000 44692000 76557000 41143000 35414000 162720000 84060000 78664000 8814700 3582700 5232000 2623800 1305500 1318300 10700 2749 11133 53078;53079;53080;53081;53082;53083;53084;53085;53086;53087;53088 53225;53226;53227;53228;53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241;53242;53243 53236 19 GEGPEVDVTLPK MPKVKMPKFSMPGFKGEGPEVDVTLPKADI GFKGEGPEVDVTLPKADIDISGPNVDVDVP K G E P K A 0 0 0 1 0 0 2 2 0 0 1 1 0 0 2 0 1 0 0 2 0 0 12 0 1239.6347 Q09666 Q09666 3617 3628 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00015936 87.298 By MS/MS By MS/MS 1 1 0.71754 0.675 21.073 2 Median NaN NaN NaN 0 0 Median 0.65401 0.58156 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.78724 0.78347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25305000 14928000 10378000 0 0 0 14283000 9282900 5000500 0 0 0 11022000 5645000 5377100 0 0 0 0 0 0 10701 2749 11134 53089;53090 53244;53245;53246;53247;53248 53247 5 GEGQLGPAER LKQFAEMYVAKFAAKGEGQLGPAERAKKVE KFAAKGEGQLGPAERAKKVEDMMKKLWGDR K G E E R A 1 1 0 0 0 1 2 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1012.4938 P13639 P13639 240 249 EEF2 Elongation factor 2 yes yes 2 7.5481E-05 133.32 By MS/MS By MS/MS By MS/MS 5 4 1 0.77517 0.69392 24.892 10 Median 0.90985 0.90197 32.948 5 0 Median 0.72725 0.62675 12.712 4 0 Median NaN NaN NaN 0 0 Median 0.83568 0.72013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93318000 50986000 42332000 18118000 9323700 8794000 72370000 40206000 32164000 0 0 0 2829800 1456500 1373300 0 0 0 0 0 0 10702 1992 11135 53091;53092;53093;53094;53095;53096;53097;53098;53099;53100 53249;53250;53251;53252;53253;53254;53255;53256;53257;53258;53259;53260;53261;53262;53263;53264 53252 16 GEGYAKPNEGAIVEVALEGYYK TEEEDGGIIRRIQTRGEGYAKPNEGAIVEV NEGAIVEVALEGYYKDKLFDQRELRFEIGE R G E Y K D 3 0 1 0 0 0 4 4 0 1 1 2 0 0 1 0 0 0 3 2 0 0 22 1 2356.1587 Q02790 Q02790 158 179 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3 0.025988 21.37 By MS/MS By MS/MS By matching 1 1 1 0.97497 0.97456 46.437 3 Median NaN NaN NaN 0 0 Median 0.78224 0.73464 NaN 1 0 Median 1.7379 1.8205 NaN 1 1 Median 0.97497 0.97456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9345700 4131400 5214200 0 0 0 4111900 2348600 1763400 4522200 1410600 3111600 711480 372220 339260 0 0 0 0 0 0 10703 2701 11136 53101;53102;53103 53265;53266 53265 2 GEHGFIGCR LFLMKLINRPIIVFRGEHGFIGCRKVTGTL PIIVFRGEHGFIGCRKVTGTLDANRSSYDV R G E C R K 0 1 0 0 1 0 1 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.4607 Q16658;C9JFC0;A0A0A0MSB2;C9JPH9 Q16658 390 398 FSCN1 Fascin yes no 2 0.00089599 91.906 By MS/MS 1 1.266 1.0715 NaN 1 Median NaN NaN NaN 0 0 Median 1.266 1.0715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5671500 2501000 3170500 0 0 0 5671500 2501000 3170500 0 0 0 0 0 0 0 0 0 0 0 0 10704 2993 11137 53104 53267 53267 1 GEHPGLSIGDVAK SAFFLFCSEYRPKIKGEHPGLSIGDVAKKL IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K G E A K K 1 0 0 1 0 0 1 3 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1278.6568 P09429;Q5T7C4;B2RPK0 P09429 115 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3 7.4492E-07 136.5 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 4 2 4 0.99761 0.85579 16.898 20 Median 0.89991 0.82651 5.5703 2 0 Median 0.82218 0.69215 14.548 3 0 Median 0.92279 0.86646 10.591 5 1 Median 1.0172 0.84954 1.6788 4 0 Median 1.0577 1.083 35.081 2 0 Median 1.0803 0.88606 8.0231 4 0 Median 526700000 260550000 266140000 27650000 13474000 14175000 7120000 4042800 3077300 293400000 147620000 145780000 158930000 75839000 83087000 9702700 4922000 4780700 29900000 14660000 15240000 10705 1915 11138 53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116;53117;53118;53119;53120;53121;53122;53123;53124;53125 53268;53269;53270;53271;53272;53273;53274;53275;53276;53277;53278;53279;53280;53281;53282;53283;53284;53285;53286;53287;53288;53289;53290;53291;53292;53293;53294;53295;53296 53286 29 GEHPGLSIGDVAKK SAFFLFCSEYRPKIKGEHPGLSIGDVAKKL KGEHPGLSIGDVAKKLGEMWNNTAADDKQP K G E K K L 1 0 0 1 0 0 1 3 1 1 1 2 0 0 1 1 0 0 0 1 0 0 14 1 1406.7518 P09429;Q5T7C4;B2RPK0 P09429 115 128 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3 9.0564E-05 71.879 By MS/MS By MS/MS By MS/MS 1 1 3 0.84037 0.79722 10.991 4 Median 0.88313 0.85805 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7425 0.74071 NaN 1 0 Median 0.88326 0.78561 15.878 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18742000 9422300 9319900 2248600 1329500 919090 0 0 0 6115300 3005000 3110300 10378000 5087800 5290500 0 0 0 0 0 0 10706 1915 11139 53126;53127;53128;53129;53130 53297;53298;53299;53300;53301;53302;53303;53304;53305 53303 9 GEHSIVYLKPSYAFGSVGK DLPYGLERAIQRMEKGEHSIVYLKPSYAFG IVYLKPSYAFGSVGKEKFQIPPNAELKYEL K G E G K E 1 0 0 0 0 0 1 3 1 1 1 2 0 1 1 3 0 0 2 2 0 0 19 1 2038.0524 Q02790 Q02790 214 232 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2;3;4 4.1664E-10 91.518 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 0.8996 0.91304 12.509 11 Median 0.8996 0.85357 9.0859 5 0 Median 0.8399 0.78776 12.73 3 0 Median 0.9502 0.99204 8.2781 2 0 Median 1.1143 1.1138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109050000 55175000 53871000 69579000 34499000 35080000 13310000 7442000 5867600 23586000 12051000 11535000 2571200 1182900 1388200 0 0 0 0 0 0 10707 2701 11140 53131;53132;53133;53134;53135;53136;53137;53138;53139;53140;53141 53306;53307;53308;53309;53310;53311;53312;53313;53314;53315;53316 53307 11 GEIAGPPDTPYEGGR QIKVDLVDENFTELRGEIAGPPDTPYEGGR GEIAGPPDTPYEGGRYQLEIKIPETYPFNP R G E G R Y 1 1 0 1 0 0 2 4 0 1 0 0 0 0 3 0 1 0 1 0 0 0 15 0 1514.7001 P61086;D6RDM7 P61086 41 55 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 2 8.0728E-06 78.692 By MS/MS By MS/MS By MS/MS 1 2 1 0.7184 0.6249 31.763 4 Median NaN NaN NaN 0 0 Median 0.70213 0.59365 NaN 1 0 Median 0.50667 0.49581 49.381 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81245 0.6578 NaN 1 0 Median 14455000 8418100 6036800 0 0 0 4515700 2729900 1785800 7375200 4618200 2757100 0 0 0 0 0 0 2564000 1070000 1494000 10708 2543 11141 53142;53143;53144;53145 53317;53318;53319 53317 3 GEIDAHEDSFK VAGAEALLDRHQEHKGEIDAHEDSFKSADE QEHKGEIDAHEDSFKSADESGQALLAAGHY K G E F K S 1 0 0 2 0 0 2 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1246.5466 A0A0D9SF54;Q13813 Q13813 408 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.00011201 123.75 By MS/MS By MS/MS By MS/MS 3 2 6 0.98455 0.95795 17.769 11 Median NaN NaN NaN 0 0 Median 1.2277 1.0755 23.874 3 0 Median 0.93214 1.0386 1.6985 2 0 Median 0.96691 0.87881 10.25 6 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32692000 15632000 17060000 0 0 0 12590000 5820300 6770000 8480200 4081200 4399100 11621000 5730300 5891000 0 0 0 0 0 0 10709 264;2838 11142 53146;53147;53148;53149;53150;53151;53152;53153;53154;53155;53156 53320;53321;53322;53323;53324;53325;53326;53327;53328;53329;53330;53331;53332;53333 53331 14 GEIEHHCSGLHR MEDFSLSPEIILSCRGEIEHHCSGLHRKGR SCRGEIEHHCSGLHRKGRTLHCLMKVVRGE R G E H R K 0 1 0 0 1 0 2 2 3 1 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1430.6473 Q92896;H3BM42 Q92896 446 457 GLG1 Golgi apparatus protein 1 yes no 3 0.0081616 28.327 By MS/MS 1 1.2515 1.0979 NaN 1 Median NaN NaN NaN 0 0 Median 1.2515 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 329380 141370 188010 0 0 0 329380 141370 188010 0 0 0 0 0 0 0 0 0 0 0 0 10710 3563 11143 53157 53334 53334 1 GEIGDATPFNDAVNVQK GHLIECLQGKVSANKGEIGDATPFNDAVNV IGDATPFNDAVNVQKISNLLSDYGYHLRGN K G E Q K I 2 0 2 2 0 1 1 2 0 1 0 1 0 1 1 0 1 0 0 2 0 0 17 0 1773.8533 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 987 1003 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.00050016 42.031 By MS/MS By MS/MS By MS/MS 1 1 1 0.46106 0.47678 29.882 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36405 0.39087 NaN 1 0 Median 0.82564 0.70335 NaN 1 0 Median 0.46106 0.47678 NaN 1 0 Median NaN NaN NaN 0 0 Median 13487000 8370100 5116600 0 0 0 0 0 0 7331800 4912300 2419500 2322700 1110600 1212000 3832200 2347200 1485000 0 0 0 10711 671 11144 53158;53159;53160 53335;53336;53337;53338 53335 4 GEILIGGQSVTMGYYK WEEGGYFNTDKPHPRGEILIGGQSVTMGYY EILIGGQSVTMGYYKNEAKTKADFFEDENG R G E Y K N 0 0 0 0 0 1 1 4 0 2 1 1 1 0 0 1 1 0 2 1 0 0 16 0 1714.86 O95573 O95573 526 541 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.00013297 53.528 By MS/MS 1 0.84925 0.81348 NaN 1 Median 0.84925 0.81348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3737200 2046700 1690500 3737200 2046700 1690500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10712 1780 11145 53161 53339;53340 53339 2 GEILQIVNR DNLIPCKEAGLKFSKGEILQIVNREDPNWW GLKFSKGEILQIVNREDPNWWQASHVKEGG K G E N R E 0 1 1 0 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1040.5978 Q9NZW5;B8ZZG1;C9J4Q3 Q9NZW5 246 254 MPP6 MAGUK p55 subfamily member 6 yes no 2 0.0018414 77.058 By MS/MS By MS/MS 1 1 0.92769 0.93762 31.77 2 Median 1.1953 1.1738 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71998 0.74897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7711000 4374700 3336300 3936800 1831600 2105300 0 0 0 3774200 2543100 1231100 0 0 0 0 0 0 0 0 0 10713 647 11146 53162;53163 53341;53342;53343 53341 3 GEISSHELNNVQDNEMLR LLVNVSGKFYEYMLKGEISSHELNNVQDNE SSHELNNVQDNEMLRKVTFDPEVFFNILLP K G E L R K 0 1 3 1 0 1 3 1 1 1 2 0 1 0 0 2 0 0 0 1 0 0 18 0 2083.9593 A0A0D9SGH0;A0A0D9SFM4 A0A0D9SGH0 105 122 SLC9A6 yes no 3 0.014464 32.181 By MS/MS By matching 1 1 1.1302 1.0184 4.9771 2 Median 1.0629 1.0548 NaN 1 0 Median 1.2018 0.98314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15841000 6243800 9597500 6979300 3085100 3894200 8862000 3158700 5703300 0 0 0 0 0 0 0 0 0 0 0 0 10714 273 11147 53164;53165 53344 53344 0 GEIVIGGQNISMGYFK WQEGGYTINDKPNPRGEIVIGGQNISMGYF EIVIGGQNISMGYFKNEEKTAEDYSVDENG R G E F K N 0 0 1 0 0 1 1 4 0 3 0 1 1 1 0 1 0 0 1 1 0 0 16 0 1711.8603 O60488;H0Y9A0 O60488 517 532 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 2 0.00068154 43.628 By MS/MS 1 0.97615 0.96145 NaN 1 Median 0.97615 0.96145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2048500 1052800 995690 2048500 1052800 995690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10715 1615 11148 53166 53345;53346 53346 2 GEIVVIGATNR IVSTLLALMDGLDSRGEIVVIGATNRLDSI LDSRGEIVVIGATNRLDSIDPALRRPGRFD R G E N R L 1 1 1 0 0 0 1 2 0 2 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1127.6299 Q6PL18 Q6PL18 566 576 ATAD2 ATPase family AAA domain-containing protein 2 no no 2 0.0059412 45.161 By MS/MS 1 1.2176 0.99141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2176 0.99141 NaN 1 0 Median 1631500 699260 932280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1631500 699260 932280 10716 3177 11149 53167 53347 53347 1 GELAIKDANAK QRASLEAAIADAEQRGELAIKDANAKLSEL AEQRGELAIKDANAKLSELEAALQRAKQDM R G E A K L 3 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 11 1 1128.6139 P05787;CON__P05787;CON__H-INV:HIT000292931;Q8IWY7;CON__REFSEQ:XP_092267 P05787 342 352 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.001389 72.643 By matching By matching By matching By MS/MS By MS/MS 1 1 1 2 2 1.1266 1.1006 39.575 7 Median 1.1412 1.1006 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1266 1.1957 NaN 1 0 Median 0.6831 0.64882 NaN 1 0 Median 1.3565 1.4816 24.066 2 0 Median 0.82098 0.71683 35.058 2 0 Median 15099000 6958700 8140400 2418000 1151200 1266800 0 0 0 211360 93696 117670 427160 238570 188590 4907700 2231600 2676100 7134800 3243600 3891200 + 10717 750 11150 53168;53169;53170;53171;53172;53173;53174 53348;53349;53350;53351;53352 53348 5 GELANEVK KANLEKAKQTLENERGELANEVKVLLQGKG QTLENERGELANEVKVLLQGKGDSEHKRKK R G E V K V 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 858.4447 P35579 P35579 1227 1234 MYH9 Myosin-9 yes yes 2 0.010468 58.815 By MS/MS 1 0.99222 0.87971 NaN 1 Median NaN NaN NaN 0 0 Median 0.99222 0.87971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5638600 2828500 2810000 0 0 0 5638600 2828500 2810000 0 0 0 0 0 0 0 0 0 0 0 0 10718 2244 11151 53175 53353 53353 1 GELASYDMR KVAIIGKIHTPMEYKGELASYDMRLRRKLD TPMEYKGELASYDMRLRRKLDLFANVVHVK K G E M R L 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 1 0 0 0 9 0 1040.4597 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 123 131 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.00054934 105.57 By MS/MS 1 1.0465 0.91287 NaN 1 Median NaN NaN NaN 0 0 Median 1.0465 0.91287 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11714000 4481100 7232900 0 0 0 11714000 4481100 7232900 0 0 0 0 0 0 0 0 0 0 0 0 10719 96 11152 53176 53354 53354 1 GELEASQQQVEVYK KQAETDHLILQASLKGELEASQQQVEVYKI KGELEASQQQVEVYKIQLAEITSEKHKIHE K G E Y K I 1 0 0 0 0 3 3 1 0 0 1 1 0 0 0 1 0 0 1 2 0 0 14 0 1606.7839 Q8IWJ2;H7BYJ9 Q8IWJ2 1251 1264 GCC2 GRIP and coiled-coil domain-containing protein 2 yes no 2 0.0011 65.5 By MS/MS 1 1.3428 1.1876 NaN 1 Median NaN NaN NaN 0 0 Median 1.3428 1.1876 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2155600 812350 1343200 0 0 0 2155600 812350 1343200 0 0 0 0 0 0 0 0 0 0 0 0 10720 3326 11153 53177 53355 53355 1 GELFLRR EYSDYSKCKKIMIERGELFLRRISLSRNKI CKKIMIERGELFLRRISLSRNKIADLCHTF R G E R R I 0 2 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 1 889.51339 Q14232;F5H0D0;H0YGG4 Q14232 97 103 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2 0.058132 46.766 By MS/MS 1 2.3098 2.4867 NaN 1 Median 2.3098 2.4867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7750200 1460900 6289300 7750200 1460900 6289300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10721 2866 11154 53178 53356 53356 1 GELLEAIKR IFWTNLSPNGGGEPKGELLEAIKRDFGSFD GGGEPKGELLEAIKRDFGSFDKFKEKLTAA K G E K R D 1 1 0 0 0 0 2 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1027.6026 P04179;F5H3C5;F5H4R2;F5GYZ5;G8JLJ2 P04179 115 123 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 2 9.0319E-05 150.84 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2035 1.1769 14.12 4 Median 1.0285 1.0677 NaN 1 0 Median 1.396 1.2833 NaN 1 0 Median 1.0375 1.0793 NaN 1 0 Median 1.6143 1.429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102740000 47809000 54931000 72809000 35402000 37406000 21756000 8802200 12954000 7130200 3262800 3867400 1044700 341520 703150 0 0 0 0 0 0 10722 1845 11155 53179;53180;53181;53182 53357;53358;53359;53360;53361;53362;53363 53361 7 GELPDFQDGTK LREDGIQKRVIQEGRGELPDFQDGTKATFH QEGRGELPDFQDGTKATFHYRTLHSDDEGT R G E T K A 0 0 0 2 0 1 1 2 0 0 1 1 0 1 1 0 1 0 0 0 0 0 11 0 1205.5564 O00170;E9PMH2 O00170 23 33 AIP AH receptor-interacting protein yes no 2 0.0020633 60.518 By matching By MS/MS By MS/MS By matching 2 2 2 1 1.0821 0.96032 18.232 7 Median 0.86249 0.82441 5.232 2 0 Median 1.2219 1.0553 13.339 2 0 Median 1.1404 1.0956 7.4825 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70582 0.72812 NaN 1 0 Median 25697000 11711000 13985000 6555200 3432800 3122500 4928300 1991200 2937100 13708000 6065700 7642800 0 0 0 0 0 0 504500 221720 282770 10723 1445 11156 53183;53184;53185;53186;53187;53188;53189 53364;53365;53366 53366 3 GELPPELVQQMEGR YALHSFASRQLKQWRGELPPELVQQMEGRR RGELPPELVQQMEGRRDSMLETAKHCFTSA R G E G R R 0 1 0 0 0 2 3 2 0 0 2 0 1 0 2 0 0 0 0 1 0 0 14 0 1581.7821 A0A087WWW8;Q9Y6J0 A0A087WWW8 1116 1129 CABIN1 Calcineurin-binding protein cabin-1 yes no 2 0.01312 46.592 By MS/MS 1 0.71659 0.79549 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71659 0.79549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1669000 711050 957930 0 0 0 0 0 0 1669000 711050 957930 0 0 0 0 0 0 0 0 0 10724 64 11157 53190 53367 53367 1 GELQNWPDLLPK IRATVGILITTIASKGELQNWPDLLPKLCS ASKGELQNWPDLLPKLCSLLDSEDYNTCEG K G E P K L 0 0 1 1 0 1 1 1 0 0 3 1 0 0 2 0 0 1 0 0 0 0 12 0 1408.7351 Q92973 Q92973 129 140 TNPO1 Transportin-1 yes yes 2 0.032829 27.115 By matching By MS/MS By matching By matching 2 1 1 2 0.79241 0.79913 31.899 6 Median 0.88633 0.86211 12.503 2 0 Median NaN NaN NaN 0 0 Median 0.76929 0.80923 NaN 1 0 Median 0.78693 0.69207 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0369 0.86217 67.395 2 0 Median 7768200 3923700 3844500 4925100 2564900 2360200 0 0 0 1659700 903750 756000 99468 45290 54178 0 0 0 1083800 409790 674060 10725 3570 11158 53191;53192;53193;53194;53195;53196 53368 53368 1 GELQSSDLFHHSK PYISNIYLIKGSALRGELQSSDLFHHSKLD LRGELQSSDLFHHSKLDPDMAFCANIRQQD R G E S K L 0 0 0 1 0 1 1 1 2 0 2 1 0 1 0 3 0 0 0 0 0 0 13 0 1483.7056 Q02809 Q02809 464 476 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 3 0.00049293 50.088 By matching By MS/MS By MS/MS 1 1 1 1.272 1.1016 4.8577 3 Plateau 1.0243 1 NaN 1 0 Median 1.2069 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.272 1.1016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12748000 6639900 6107800 2694800 1235300 1459500 3874300 1716900 2157400 0 0 0 6178600 3687800 2490900 0 0 0 0 0 0 10726 2702 11159 53197;53198;53199 53369;53370;53371 53371 3 GELSGDFEK EYLKTTGKPIEASIRGELSGDFEKLMLAVV IEASIRGELSGDFEKLMLAVVKCIRSTPEY R G E E K L 0 0 0 1 0 0 2 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 9 0 980.44509 P08133 P08133 232 240 ANXA6 Annexin A6 yes yes 2 0.0015606 80.165 By MS/MS By MS/MS By matching 2 1 1 0.86624 0.86981 15.329 4 Median 0.82341 0.78285 5.1662 2 0 Median 1.2792 1.0673 NaN 1 0 Median 0.87601 0.93176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38821000 17718000 21103000 12041000 6158600 5882700 23266000 9915300 13350000 3514000 1644000 1870000 0 0 0 0 0 0 0 0 0 10727 1898 11160 53200;53201;53202;53203 53372;53373;53374;53375 53375 4 GELSTLLYNTHPYR FLHAQRYVSGYGLQKGELSTLLYNTHPYRA KGELSTLLYNTHPYRAFPVLLLDTVPWYLR K G E Y R A 0 1 1 0 0 0 1 1 1 0 3 0 0 0 1 1 2 0 2 0 0 0 14 0 1662.8366 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPR6;A0A1W2PPK4;A0A1W2PPQ7;A0A1W2PSC5;A0A1W2PQ52;A0A1W2PRZ8;A0A1W2PP13 Q969N2 366 379 PIGT GPI transamidase component PIG-T yes no 3 0.00020242 62.042 By MS/MS By matching By matching 1 1 1 0.91984 0.88657 10.222 3 Median 0.91984 0.88657 NaN 1 0 Median 1.2196 1.0515 NaN 1 0 Median 0.83363 0.87584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10222000 5220600 5001100 6492800 3611500 2881300 1381500 584160 797340 2347400 1024900 1322500 0 0 0 0 0 0 0 0 0 10728 331 11161 53204;53205;53206 53376;53377 53376 2 GELTGEVR MLRPFNLVIPFAVQKGELTGEVRMPSGKTA IPFAVQKGELTGEVRMPSGKTARPNITDNK K G E V R M 0 1 0 0 0 0 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 859.43995 Q14315 Q14315 1796 1803 FLNC Filamin-C yes yes 2 0.0074447 67.032 By MS/MS By matching 1 2 1.0636 0.88613 3.159 3 Plateau NaN NaN NaN 0 0 Median 1.0636 0.88613 NaN 1 0 Median 0.91681 0.89975 4.2904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2842000 1355300 1486600 0 0 0 1506900 691630 815290 1335100 663700 671350 0 0 0 0 0 0 0 0 0 10729 2871 11162 53207;53208;53209 53378;53379 53378 2 GELTTLIHQLQEK EKSGVIQDALKKSSKGELTTLIHQLQEKDK SKGELTTLIHQLQEKDKLLAAVKEDAAATK K G E E K D 0 0 0 0 0 2 2 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1508.8199 Q86UP2 Q86UP2 325 337 KTN1 Kinectin yes yes 2 0.00019841 81.475 By matching By MS/MS By matching 1 2 1 1.1327 0.99488 31.528 4 Median 0.59117 0.55801 NaN 1 0 Median 1.1327 0.99488 6.4368 2 1 Median NaN NaN NaN 0 0 Median 1.324 1.1164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7009400 3245700 3763700 1121000 737590 383430 4270500 1761500 2509000 0 0 0 1617900 746650 871260 0 0 0 0 0 0 10730 3280 11163 53210;53211;53212;53213 53380;53381 53381 2 GELVGGLDIVK KAYSNWPTYPQLYVKGELVGGLDIVKELKE LYVKGELVGGLDIVKELKENGELLPILRGE K G E V K E 0 0 0 1 0 0 1 3 0 1 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1098.6285 O76003 O76003 309 319 GLRX3 Glutaredoxin-3 yes yes 2 0.00075509 63.216 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2906 1.2084 16.867 4 Median 1.2039 1.1032 NaN 1 0 Median 1.1077 0.94351 NaN 1 0 Median 1.3834 1.3237 NaN 1 0 Median 1.5126 1.3496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109380000 50147000 59236000 77466000 35738000 41728000 27426000 12669000 14758000 3847100 1553900 2293200 643010 186330 456680 0 0 0 0 0 0 10731 1715 11164 53214;53215;53216;53217 53382;53383;53384;53385 53382 4 GEMDSFSLISDSAYVAQNAAR SYGKINILLQTYISRGEMDSFSLISDSAYV SLISDSAYVAQNAARIVRALFEIALRKRWP R G E A R I 4 1 1 2 0 1 1 1 0 1 1 0 1 1 0 4 0 0 1 1 0 0 21 0 2231.0165 Q8N3C0 Q8N3C0 1068 1088 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0085145 25.718 By MS/MS 1 1.2056 1.2134 NaN 1 Median 1.2056 1.2134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1506200 626210 879980 1506200 626210 879980 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10732 3366 11165 53218 53386 53386 1 GEMMDLQHGSLFLQTPK ADELALVDVLEDKLKGEMMDLQHGSLFLQT MMDLQHGSLFLQTPKIVADKDYSVTANSKI K G E P K I 0 0 0 1 0 2 1 2 1 0 3 1 2 1 1 1 1 0 0 0 0 0 17 0 1930.9281 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 61 77 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2;3 7.6387E-11 107.37 By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 1.0253 0.92612 9.4173 10 Median 1.0066 0.93174 3.6633 4 0 Median 1.0537 0.8898 15.051 4 0 Median 0.9707 0.93463 NaN 1 0 Median 1.2071 1.0323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 351300000 173420000 177880000 133590000 65624000 67964000 201780000 99628000 102150000 15493000 7990300 7502600 440330 175050 265280 0 0 0 0 0 0 10733 1880 11166 53219;53220;53221;53222;53223;53224;53225;53226;53227;53228 53387;53388;53389;53390;53391;53392;53393;53394;53395;53396 53393 10 GEMMDLQHGSLFLR ADELALVDVIEDKLKGEMMDLQHGSLFLRT KGEMMDLQHGSLFLRTPKIVSGKDYNVTAN K G E L R T 0 1 0 1 0 1 1 2 1 0 3 0 2 1 0 1 0 0 0 0 0 0 14 0 1632.7752 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8 P00338 60 73 LDHA L-lactate dehydrogenase A chain yes no 2;3 7.0835E-08 158.41 By MS/MS By MS/MS By MS/MS By matching By matching 9 3 4 4 1 1.1882 1.1288 19.253 20 Median 1.2156 1.1937 5.408 8 0 Median 1.0637 0.8842 5.3863 3 0 Median 1.3149 1.3012 7.4193 4 2 Median 1.2967 1.087 20.34 4 0 Linear NaN NaN NaN 0 0 Median 1.2681 1.1179 NaN 1 0 Median 356880000 162950000 193940000 196400000 86829000 109570000 133080000 63882000 69193000 25292000 11250000 14041000 1789800 814240 975580 0 0 0 324400 170360 154040 10734 1813 11167;11168;11169 53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245;53246;53247;53248;53249 53397;53398;53399;53400;53401;53402;53403;53404;53405;53406;53407;53408;53409;53410;53411;53412;53413;53414 53412 581;582 18 GEMNVTLGIPR PSTQMTLNTFHFAGRGEMNVTLGIPRLREI FAGRGEMNVTLGIPRLREILMVASANIKTP R G E P R L 0 1 1 0 0 0 1 2 0 1 1 0 1 0 1 0 1 0 0 1 0 0 11 0 1185.6176 O95602;B9ZVN9 O95602 1237 1247 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.00013248 118.71 By matching By MS/MS By matching 1 2 1 1.2388 1.1865 40.765 4 Median NaN NaN NaN 0 0 Median 1.1251 0.94702 NaN 1 0 Median 1.0339 1.1269 39.168 2 1 Median NaN NaN NaN 0 0 Median 1.9379 2.0539 NaN 1 0 Median NaN NaN NaN 0 0 Median 41333000 21418000 19915000 0 0 0 1987600 872140 1115400 37348000 19759000 17589000 0 0 0 1998300 787110 1211200 0 0 0 10735 1781 11170;11171 53250;53251;53252;53253 53415;53416;53417 53416 569 3 GEMTALREELK FSLLSDVFPGVQYHRGEMTALREELKKVCQ QYHRGEMTALREELKKVCQEMYLTYGDGEE R G E L K K 1 1 0 0 0 0 3 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1275.6493 Q14204;A0A2R8YFZ7 Q14204 2173 2183 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 9.5618E-09 142 By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1.0106 1.0559 83.633 8 Median 1.2187 1.2666 46.093 2 1 Median 0.35969 0.33565 151.24 2 0 Median 1.0106 1.1715 3.8436 2 1 Median 0.97553 0.90867 38.151 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65128000 32422000 32707000 27344000 10662000 16683000 14648000 9430900 5216900 19182000 9908000 9274100 3954200 2421300 1532900 0 0 0 0 0 0 10736 2865 11172 53254;53255;53256;53257;53258;53259;53260;53261 53418;53419;53420;53421;53422;53423;53424 53420 7 GEMTALREELKK FSLLSDVFPGVQYHRGEMTALREELKKVCQ YHRGEMTALREELKKVCQEMYLTYGDGEEV R G E K K V 1 1 0 0 0 0 3 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 12 2 1403.7442 Q14204;A0A2R8YFZ7 Q14204 2173 2184 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.00020946 92.866 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 1 0.92982 1.0119 27.727 9 Median 0.85593 0.93146 11.709 2 0 Median 1.0639 1.1335 NaN 1 0 Median 0.95235 1.2638 38.517 3 0 Median 0.92066 1.0049 18.853 2 0 Median NaN NaN NaN 0 0 Median 0.58764 0.60289 NaN 1 0 Median 155130000 77857000 77270000 43105000 23981000 19123000 66134000 30657000 35478000 35331000 18409000 16922000 9700300 4425300 5275000 0 0 0 857390 385260 472130 10737 2865 11173 53262;53263;53264;53265;53266;53267;53268;53269;53270;53271;53272 53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435;53436;53437;53438 53429 14 GENHLTVTWK ETMDQGDVIIRPSSKGENHLTVTWKVSDGI RPSSKGENHLTVTWKVSDGIYQHVDVREEG K G E W K V 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 2 1 0 1 0 0 10 0 1183.5986 Q7KZ85 Q7KZ85 1363 1372 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.053082 43.282 By MS/MS 1 1.0212 0.89709 NaN 1 Median NaN NaN NaN 0 0 Median 1.0212 0.89709 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1514600 841200 673400 0 0 0 1514600 841200 673400 0 0 0 0 0 0 0 0 0 0 0 0 10738 3213 11174 53273 53439 53439 1 GENLEHLR VKNIMTQNVERILARGENLEHLRNKTEDLE VERILARGENLEHLRNKTEDLEATSEHFKT R G E L R N 0 1 1 0 0 0 2 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 966.48829 Q9BV40;B8ZZT4;C9JXZ5 Q9BV40 38 45 VAMP8 Vesicle-associated membrane protein 8 yes no 2 0.0032009 100.45 By MS/MS By MS/MS 1 1 0.97713 0.88916 15.977 2 Median 0.81359 0.79417 NaN 1 1 Median 1.1735 0.9955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8216900 3756100 4460900 2874000 1537200 1336800 5342900 2218900 3124000 0 0 0 0 0 0 0 0 0 0 0 0 10739 3845 11175 53274;53275 53440;53441;53442 53442 3 GENLVSMTVEGPPPK AEREEKRVLGLVLLRGENLVSMTVEGPPPK GENLVSMTVEGPPPKDTGIARVPLAGAAGG R G E P K D 0 0 1 0 0 0 2 2 0 0 1 1 1 0 3 1 1 0 0 2 0 0 15 0 1553.7759 P14678;J3QLE5;P63162 P14678 74 88 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 5.3492E-11 129.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 5 2 3 0.74517 0.66514 16.941 18 Median 0.60165 0.57007 1.5412 2 0 Median 0.78165 0.65695 NaN 1 0 Median 0.61016 0.57234 12.135 5 0 Median 0.80538 0.68758 7.4315 5 2 Median 0.81021 0.82705 29.059 2 0 Median 0.85196 0.70316 15.051 3 0 Median 236870000 137950000 98923000 22203000 14888000 7315200 5134200 2874900 2259300 139020000 82799000 56216000 16142000 8539600 7602000 40911000 22082000 18828000 13467000 6764400 6702500 10740 2009 11176;11177 53276;53277;53278;53279;53280;53281;53282;53283;53284;53285;53286;53287;53288;53289;53290;53291;53292;53293 53443;53444;53445;53446;53447;53448;53449;53450;53451;53452;53453;53454;53455;53456;53457;53458;53459;53460;53461;53462;53463;53464;53465;53466;53467;53468;53469;53470;53471;53472;53473;53474;53475;53476;53477;53478;53479;53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490 53476 798 48 GENLVSMTVEGPPPKDTGIAR AEREEKRVLGLVLLRGENLVSMTVEGPPPK MTVEGPPPKDTGIARVPLAGAAGGPGIGRA R G E A R V 1 1 1 1 0 0 2 3 0 1 1 1 1 0 3 1 2 0 0 2 0 0 21 1 2167.0943 P14678;J3QLE5;P63162 P14678 74 94 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2;3 1.6612E-24 130.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 5 5 4 3 0.73095 0.68922 12.703 21 Median 0.68656 0.71497 NaN 1 0 Median 0.73166 0.68922 6.7079 3 0 Median 0.60511 0.63953 5.4781 5 0 Median 0.79584 0.72107 20.954 5 0 Median 0.66267 0.71037 11.087 4 0 Median 0.76838 0.65678 9.9632 3 0 Median 248620000 148800000 99822000 29697000 18873000 10824000 16551000 9295000 7256400 130720000 79588000 51137000 17574000 9282700 8291000 50029000 29435000 20594000 4045500 2325200 1720300 10741 2009 11178;11179 53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308;53309;53310;53311;53312;53313;53314 53491;53492;53493;53494;53495;53496;53497;53498;53499;53500;53501;53502;53503;53504;53505;53506;53507;53508;53509;53510;53511;53512;53513;53514;53515;53516;53517;53518;53519;53520 53498 798 30 GENSWFSTQVDTVATK KKSIRVILDLTPNYRGENSWFSTQVDTVAT ENSWFSTQVDTVATKVKDALEFWLQAGVDG R G E T K V 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 2 3 1 0 2 0 0 16 0 1768.8268 F5GZS6;J3KPF3;P08195 F5GZS6 283 298 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 2.9413E-05 82.543 By MS/MS By matching 3 1 1.3295 1.3072 39.026 4 Median 1.609 1.4586 47.291 3 0 Median NaN NaN NaN 0 0 Median 1.0986 1.1715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20275000 8053900 12221000 18840000 7613300 11227000 0 0 0 1434700 440620 994120 0 0 0 0 0 0 0 0 0 10742 1016 11180 53315;53316;53317;53318 53521;53522;53523;53524 53521 4 GEPAAAAAPEAGASPVEK AAAGSGAASPSAAEKGEPAAAAAPEAGASP AAAAAPEAGASPVEKEAPAEGEAAEPGSPT K G E E K E 7 0 0 0 0 0 3 2 0 0 0 1 0 0 3 1 0 0 0 1 0 0 18 0 1621.7948 P29966 P29966 88 105 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 2 5.2042E-14 115.91 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.5853 0.55457 14.462 5 Median 0.5853 0.55457 NaN 1 0 Median 0.60498 0.51791 23.17 2 0 Median 0.52906 0.54375 NaN 1 0 Median 0.75073 0.63943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35867000 20766000 15101000 8169200 5199900 2969300 21815000 12175000 9639700 2883300 1750900 1132400 2999100 1639400 1359700 0 0 0 0 0 0 10743 2175 11181 53319;53320;53321;53322;53323 53525;53526;53527;53528;53529;53530;53531;53532;53533;53534 53531 10 GEPEKLGQALTEVYAK EIPPSDSISETVILRGEPEKLGQALTEVYA EPEKLGQALTEVYAKANSFTVSSVAAPSWL R G E A K A 2 0 0 0 0 1 3 2 0 0 2 2 0 0 1 0 1 0 1 1 0 0 16 1 1731.9043 Q00341;A0A024R4E5;H7C0A4 Q00341 345 360 HDLBP Vigilin yes no 2;3 4.2355E-05 83.087 By MS/MS By MS/MS 3 1 0.90391 0.90034 31.921 4 Median 0.92579 0.95675 7.8116 3 0 Median NaN NaN NaN 0 0 Median 0.43075 0.49549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36372000 19780000 16592000 30059000 15313000 14746000 0 0 0 6312700 4467100 1845500 0 0 0 0 0 0 0 0 0 10744 4 11182 53324;53325;53326;53327 53535;53536;53537;53538 53536 4 GEPETFLPLDYLEVKPTDEK EKTGRDCIQYIKEQRGEPETFLPLDYLEVK FLPLDYLEVKPTDEKLRELKGAKLVIDVIR R G E E K L 0 0 0 2 0 0 4 1 0 0 3 2 0 1 3 0 2 0 1 1 0 0 20 1 2319.1522 Q14683;G8JLG1 Q14683 565 584 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 8.6815E-07 50.425 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 2 0.61777 0.65632 10.839 6 Median 0.62816 0.63372 NaN 1 0 Median 0.80964 0.76134 NaN 1 0 Median 0.52771 0.6099 NaN 1 0 Median 0.7591 0.70719 NaN 1 0 Median 0.56582 0.61885 13.271 2 0 Median NaN NaN NaN 0 0 Median 20022000 12334000 7688200 2613000 1674500 938560 974650 547880 426770 10233000 6393100 3839700 621560 341830 279730 5580000 3376600 2203400 0 0 0 10745 2889 11183 53328;53329;53330;53331;53332;53333 53539;53540;53541;53542 53541 4 GEPETFLPLDYLEVKPTDEKLR EKTGRDCIQYIKEQRGEPETFLPLDYLEVK PLDYLEVKPTDEKLRELKGAKLVIDVIRYE R G E L R E 0 1 0 2 0 0 4 1 0 0 4 2 0 1 3 0 2 0 1 1 0 0 22 2 2588.3374 Q14683;G8JLG1 Q14683 565 586 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 8.9351E-05 35.174 By MS/MS 1 0.43914 0.50039 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43914 0.50039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11087000 7170100 3917100 0 0 0 0 0 0 11087000 7170100 3917100 0 0 0 0 0 0 0 0 0 10746 2889 11184 53334 53543;53544 53544 2 GEPGRPALYFCGSIR ______________________________ GEPGRPALYFCGSIRGGREDRTLYERIVSR R G E I R G 1 2 0 0 1 0 1 3 0 1 1 0 0 1 2 1 0 0 1 0 0 0 15 1 1678.825 H0Y8X4;O43598 H0Y8X4 15 29 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 3 0.033082 17.489 By MS/MS 1 0.97427 0.89129 NaN 1 Median NaN NaN NaN 0 0 Median 0.97427 0.89129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221600 1563700 1657900 0 0 0 3221600 1563700 1657900 0 0 0 0 0 0 0 0 0 0 0 0 10747 1164 11185 53335 53545;53546 53545 2 GEPMPSELKL TMSLLAANNLLAGLRGEPMPSELKL_____ LAGLRGEPMPSELKL_______________ R G E K L - 0 0 0 0 0 0 2 1 0 0 2 1 1 0 2 1 0 0 0 0 0 0 10 1 1099.5583 Q9UBQ7 Q9UBQ7 319 328 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 2 0.041482 34.387 By MS/MS By matching 1 1 0.84462 0.74583 28.083 2 Median 0.66089 0.61151 NaN 1 0 Median 1.0794 0.90966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12674000 7025100 5649300 10678000 6107800 4569700 1996900 917280 1079600 0 0 0 0 0 0 0 0 0 0 0 0 10748 4243 11186 53336;53337 53547 53547 1 GEPPLPEEDLSK YQQRRQQENMQRQSRGEPPLPEEDLSKLFK QSRGEPPLPEEDLSKLFKPPQPPARMDSLL R G E S K L 0 0 0 1 0 0 3 1 0 0 2 1 0 0 3 1 0 0 0 0 0 0 12 0 1309.6402 B3KS98;O15372;A0A087WZK9 B3KS98 306 317 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.00063636 63.408 By matching By MS/MS By MS/MS 1 1 1 0.77707 0.71005 22.144 3 Plateau NaN NaN NaN 0 0 Median 0.83355 0.71005 NaN 1 0 Median 0.63656 0.65759 NaN 1 0 Median 0.55127 0.46835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44901000 25499000 19402000 0 0 0 23057000 12529000 10528000 15842000 8887000 6955000 6002100 4082900 1919100 0 0 0 0 0 0 10749 584 11187 53338;53339;53340 53548;53549;53550 53549 3 GEPVLLVGETGTGK PSSVLIEQLAVCVSKGEPVLLVGETGTGKT KGEPVLLVGETGTGKTSTIQYLAHITGHRL K G E G K T 0 0 0 0 0 0 2 4 0 0 2 1 0 0 1 0 2 0 0 2 0 0 14 0 1355.7296 Q9NU22;Q5T795 Q9NU22 670 683 MDN1 Midasin yes no 2 1.1044E-14 134.98 By MS/MS By MS/MS 1 1 0.74 0.74597 17.777 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61669 0.65785 NaN 1 1 Median 0.88797 0.84589 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24654000 14453000 10201000 0 0 0 0 0 0 23296000 13697000 9598800 1357900 755680 602190 0 0 0 0 0 0 10750 4112 11188 53341;53342 53551;53552 53551 2 GEQGYGFHLHGEK AAPEPLRPRLCRLVRGEQGYGFHLHGEKGR VRGEQGYGFHLHGEKGRRGQFIRRVEPGSP R G E E K G 0 0 0 0 0 1 2 4 2 0 1 1 0 1 0 0 0 0 1 0 0 0 13 0 1457.6688 Q15599 Q15599 17 29 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes yes 3 0.011633 25.731 By matching By MS/MS By MS/MS 1 1 1 1.1507 1.2499 14.913 3 Plateau NaN NaN NaN 0 0 Median 1.1128 0.95538 NaN 1 0 Median 1.1507 1.2499 NaN 1 0 Median 1.4481 1.2224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5323900 2452600 2871300 0 0 0 908750 446000 462750 2925800 1409800 1516000 1489300 596720 892550 0 0 0 0 0 0 10751 2958 11189 53343;53344;53345 53553;53554;53555;53556 53555 4 GEQLFLEPELVIPHR AKVFAQPNLAEMIQKGEQLFLEPELVIPHR GEQLFLEPELVIPHRQHRLFTAPTFTGSFL K G E H R Q 0 1 0 0 0 1 3 1 1 1 3 0 0 1 2 0 0 0 0 1 0 0 15 0 1775.957 Q9NXE4;H7C1Q6;H7C0W5;H7C2J2;H7C235 Q9NXE4 524 538 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 3 0.0023725 31.827 By matching By matching By MS/MS By matching 1 1 2 1 0.81742 0.85812 17.317 5 Median 1.1355 1.1549 NaN 1 0 Median 0.87999 0.8047 NaN 1 0 Median 0.74395 0.79767 13.568 2 1 Median NaN NaN NaN 0 0 Median 0.80873 0.85812 NaN 1 0 Median NaN NaN NaN 0 0 Median 7425200 4252900 3172300 605540 363380 242160 610210 324610 285600 5495900 3147900 2348000 0 0 0 713540 417020 296520 0 0 0 10752 4162 11190 53346;53347;53348;53349;53350 53557;53558;53559 53558 3 GEQQPISSPWDVVFGTSGSEVQR AGIGIQGTDKEGGAKGEQQPISSPWDVVFG PWDVVFGTSGSEVQRGDILWIAMAGTHQIW K G E Q R G 0 1 0 1 0 3 2 3 0 1 0 0 0 1 2 4 1 1 0 3 0 0 23 0 2489.1823 Q8NBF2 Q8NBF2 330 352 NHLRC2 NHL repeat-containing protein 2 yes yes 2;3 0.0046671 26.148 By MS/MS 2 0.49855 0.49592 32.089 2 Median 0.49855 0.49592 32.089 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1983700 1265800 717840 1983700 1265800 717840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10753 3402 11191 53351;53352 53560;53561;53562 53561 3 GEQYVVIIQNK KNIKQNAHIVEWSPRGEQYVVIIQNKIDIY WSPRGEQYVVIIQNKIDIYQLDTASISGTI R G E N K I 0 0 1 0 0 2 1 1 0 2 0 1 0 0 0 0 0 0 1 2 0 0 11 0 1289.698 Q9NWT1 Q9NWT1 176 186 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 2 0.0019074 56.432 By matching By MS/MS By matching 1 1 2 1.2753 1.1902 18.79 4 Median NaN NaN NaN 0 0 Median 1.2757 1.0903 NaN 1 0 Median 1.1861 1.2449 NaN 1 0 Median 1.5847 1.3725 26.51 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9429000 4102400 5326600 0 0 0 152430 62963 89465 6299600 2550800 3748800 2976900 1488600 1488300 0 0 0 0 0 0 10754 4150 11192 53353;53354;53355;53356 53563 53563 1 GESDPAYQQYQDAANNLR FLKDGDDVIIIGVFKGESDPAYQQYQDAAN DPAYQQYQDAANNLREDYKFHHTFSTEIAK K G E L R E 3 1 2 2 0 3 1 1 0 0 1 0 0 0 1 1 0 0 2 0 0 0 18 0 2038.8981 P13667;A0A499FI48 P13667 314 331 PDIA4 Protein disulfide-isomerase A4 yes no 2 4.1413E-14 114.72 By MS/MS By matching By matching By matching 1 2 1 2 1.085 0.95654 11.243 6 Median 0.88916 0.84149 NaN 1 0 Median 1.1755 1.0518 4.8026 2 0 Median 0.76766 0.82031 NaN 1 0 Median 1.1109 0.95654 6.5094 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12764000 6679200 6085300 7794000 4188100 3605900 1345700 670500 675180 2631900 1380900 1251000 992970 439760 553200 0 0 0 0 0 0 10755 1993 11193 53357;53358;53359;53360;53361;53362 53564;53565 53565 2 GESDPAYQQYQDAANNLREDYK FLKDGDDVIIIGVFKGESDPAYQQYQDAAN QQYQDAANNLREDYKFHHTFSTEIAKFLKV K G E Y K F 3 1 2 3 0 3 2 1 0 0 1 1 0 0 1 1 0 0 3 0 0 0 22 1 2574.1259 P13667;A0A499FI48 P13667 314 335 PDIA4 Protein disulfide-isomerase A4 yes no 3 3.539E-12 64.723 By MS/MS By matching By matching 1 1 1 1.5028 1.5122 46.079 3 Median 0.86634 0.8888 NaN 1 0 Median 1.5028 1.5122 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2843 2.2252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6352800 3201500 3151400 5909100 3032600 2876500 266620 107560 159060 0 0 0 177070 61289 115780 0 0 0 0 0 0 10756 1993 11194 53363;53364;53365 53566;53567 53567 2 GESFYQDR LNKIYDALDVSLIERGESFYQDRMNDIVKE DVSLIERGESFYQDRMNDIVKEFEDRGFVQ R G E D R M 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 8 0 1000.425 P54136 P54136 334 341 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0081051 64.265 By MS/MS By MS/MS 1 1 1.1942 1.0968 4.3896 2 Median 1.1604 1.1314 NaN 1 0 Median 1.229 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15186000 6788500 8397200 4656300 2064900 2591400 10529000 4723500 5805800 0 0 0 0 0 0 0 0 0 0 0 0 10757 2480 11195 53366;53367 53568;53569 53568 2 GESGQSWPR KHKRTDRSILCCLRKGESGQSWPRLTKERA LCCLRKGESGQSWPRLTKERAKLNWLSVDF K G E P R L 0 1 0 0 0 1 1 2 0 0 0 0 0 0 1 2 0 1 0 0 0 0 9 0 1002.4519 Q15185;A0A087WYT3;B4DDC6 Q15185 80 88 PTGES3 Prostaglandin E synthase 3 yes no 2 0.0061228 55.531 By MS/MS By MS/MS By MS/MS 1 1 1 0.88653 0.74487 13.281 3 Median 0.93124 0.93173 NaN 1 0 Median 0.88653 0.73603 NaN 1 0 Median 0.79746 0.74487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4914900 2616500 2298400 1887600 1000600 887020 2016300 1003400 1012900 1011000 612500 398490 0 0 0 0 0 0 0 0 0 10758 87 11196 53368;53369;53370 53570;53571;53572;53573 53570 4 GESKDLLFILTAK GMYGKIAVMELFRPKGESKDLLFILTAKYN PKGESKDLLFILTAKYNACILEYKQSGESI K G E A K Y 1 0 0 1 0 0 1 1 0 1 3 2 0 1 0 1 1 0 0 0 0 0 13 1 1433.813 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 71 83 DDB1 DNA damage-binding protein 1 yes no 3 0.015813 25.178 By matching By MS/MS 1 2 0.82761 0.94079 19.257 3 Median NaN NaN NaN 0 0 Median 1.2865 1.2204 NaN 1 0 Median 0.77861 0.88788 8.1859 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3594600 1967700 1626900 0 0 0 476710 255350 221350 3117900 1712400 1405500 0 0 0 0 0 0 0 0 0 10759 2985 11197 53371;53372;53373 53574;53575;53576 53575 3 GESPVDYDGGR RYGIRGFPTIKIFQKGESPVDYDGGRTRSD IFQKGESPVDYDGGRTRSDIVSRALDLFSD K G E G R T 0 1 0 2 0 0 1 3 0 0 0 0 0 0 1 1 0 0 1 1 0 0 11 0 1150.4891 Q15084 Q15084 246 256 PDIA6 Protein disulfide-isomerase A6 yes yes 2 0.00020877 100.25 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 1 1.0451 0.96844 14.53 10 Median 0.88441 0.85665 1.3567 2 0 Median 1.128 0.95481 17.822 5 0 Median 1.0451 1.0952 4.0714 2 0 Median 1.1365 0.98227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65680000 30803000 34877000 25043000 12522000 12521000 29799000 13012000 16787000 4207600 2094300 2113300 6631000 3175600 3455400 0 0 0 0 0 0 10760 2927 11198 53374;53375;53376;53377;53378;53379;53380;53381;53382;53383 53577;53578;53579;53580;53581;53582;53583;53584;53585;53586;53587;53588;53589;53590 53580 14 GESQTDIEITR NPRIVLLDSSLEYKKGESQTDIEITREEDF EYKKGESQTDIEITREEDFTRILQMEEEYI K G E T R E 0 1 0 1 0 1 2 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 11 0 1247.5994 P49368;B4DUR8 P49368 250 260 CCT3 T-complex protein 1 subunit gamma yes no 2 2.5164E-05 123.86 By MS/MS 1 0.69632 0.60229 NaN 1 Median NaN NaN NaN 0 0 Median 0.69632 0.60229 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11877000 7410200 4466900 0 0 0 11877000 7410200 4466900 0 0 0 0 0 0 0 0 0 0 0 0 10761 2379 11199 53384 53591 53591 1 GETAVPGAPEALR DVDTLLFDCDGVLWRGETAVPGAPEALRAL WRGETAVPGAPEALRALRARGKRLGFITNN R G E L R A 3 1 0 0 0 0 2 2 0 0 1 0 0 0 2 0 1 0 0 1 0 0 13 0 1266.6568 A6NDG6 A6NDG6 42 54 PGP Phosphoglycolate phosphatase yes yes 2 6.9595E-07 104.22 By MS/MS By MS/MS By MS/MS 1 1 1 0.79108 0.67838 5.1251 3 Median 0.77772 0.72703 NaN 1 0 Median 0.79108 0.6578 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81231 0.67838 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57609000 30194000 27414000 32952000 17420000 15532000 23021000 11967000 11054000 0 0 0 1636300 807880 828400 0 0 0 0 0 0 10762 506 11200 53385;53386;53387 53592;53593;53594;53595 53593 4 GETDLIQK VLPRIHDVLCKLVEKGETDLIQKAMDFVSQ LCKLVEKGETDLIQKAMDFVSQEQGEMVML K G E Q K A 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 902.47091 P42704 P42704 869 876 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.017258 68.915 By MS/MS 2 1.4758 1.25 0.72318 2 Median NaN NaN NaN 0 0 Median 1.4758 1.25 0.72318 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19006000 7180000 11826000 0 0 0 19006000 7180000 11826000 0 0 0 0 0 0 0 0 0 0 0 0 10763 2315 11201 53388;53389 53596;53597 53596 2 GETESEEFEK QVEAGKRLEELRRRRGETESEEFEKLKQKQ LRRRRGETESEEFEKLKQKQQEAALELEEL R G E E K L 0 0 0 0 0 0 5 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1183.4881 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 283 292 CALD1 Caldesmon yes no 2 0.012906 40.724 By MS/MS 1 0.79538 0.6915 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79538 0.6915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 777220 434870 342340 0 0 0 0 0 0 0 0 0 777220 434870 342340 0 0 0 0 0 0 10764 928 11202 53390 53598 53598 1 GETLGIIGLGR VEQIREVASGAARIRGETLGIIGLGRVGQA ARIRGETLGIIGLGRVGQAVALRAKAFGFN R G E G R V 0 1 0 0 0 0 1 4 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1084.6241 Q13363;D6RAX2 Q13363 174 184 CTBP1 C-terminal-binding protein 1 yes no 2 0.00011472 131.06 By matching By MS/MS By matching 1 2 1 1.0854 1.0487 10.682 4 Median NaN NaN NaN 0 0 Median 1.238 1.1086 NaN 1 0 Median 0.94275 0.96749 3.5551 2 0 Median 1.3664 1.195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9921900 4813600 5108400 0 0 0 252910 116260 136650 9236400 4499700 4736700 432620 197640 234990 0 0 0 0 0 0 10765 2808 11203 53391;53392;53393;53394 53599;53600;53601 53600 3 GETLGLIGFGR VEQIREVASGAARIRGETLGLIGFGRTGQA ARIRGETLGLIGFGRTGQAVAVRAKAFGFS R G E G R T 0 1 0 0 0 0 1 4 0 1 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1118.6084 P56545 P56545 180 190 CTBP2 C-terminal-binding protein 2 yes yes 2 0.00017521 111.95 By matching By MS/MS By matching 1 1 1 1.6171 1.4098 16.425 3 Median NaN NaN NaN 0 0 Median 1.7713 1.5352 NaN 1 0 Median 1.1444 1.1177 NaN 1 0 Median 1.6171 1.4098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30038000 14114000 15924000 0 0 0 1709600 559730 1149900 27303000 13197000 14106000 1026000 357180 668790 0 0 0 0 0 0 10766 2514 11204 53395;53396;53397 53602;53603 53603 2 GETPRVEEVGPYTYR QFYFFNVTNPEEILRGETPRVEEVGPYTYR GETPRVEEVGPYTYRELRNKANIQFGDNGT R G E Y R E 0 2 0 0 0 0 3 2 0 0 0 0 0 0 2 0 2 0 2 2 0 0 15 1 1751.8479 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PSE4;A0A1W2PS70;A0A1W2PNX7;D6RDG0 A0A1W2PPU6 78 92 SCARB2 Lysosome membrane protein 2 yes no 3 9.5703E-05 68.044 By MS/MS 1 0.97301 0.99763 NaN 1 Median 0.97301 0.99763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5365400 2619900 2745500 5365400 2619900 2745500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10767 340 11205 53398 53604 53604 1 GETVPLDVLQIK NKVQHITDATLAIVKGETVPLDVLQIKGEK IVKGETVPLDVLQIKGEKEQPVFAMTGLRW K G E I K G 0 0 0 1 0 1 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 12 0 1310.7446 E9PC15;A0A3B3ITD0;Q53H12;E9PG39;A0A3B3ISY9;A0A3B3ISZ0;A0A3B3ITX7;A0A3B3IUC9;A0A3B3ITV0 E9PC15 157 168 AGK Acylglycerol kinase, mitochondrial yes no 2 0.0011286 56.729 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0746 0.91579 27.777 5 Median 0.76346 0.7258 NaN 1 0 Median 1.2079 1.0301 11.955 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57459 0.5473 NaN 1 0 Median 1.0746 0.91579 NaN 1 0 Median 22201000 11504000 10697000 3810200 2224700 1585500 11401000 4993300 6407800 0 0 0 0 0 0 6409700 4034100 2375600 580260 252190 328070 10768 435 11206 53399;53400;53401;53402;53403 53605;53606;53607 53607 3 GEVAQMAAYYEHR GLLSELLHNCDGQLKGEVAQMAAYYEHRLQ LKGEVAQMAAYYEHRLQLGSKAIYHLEAFV K G E H R L 3 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 2 1 0 0 13 0 1523.6827 P40938 P40938 309 321 RFC3 Replication factor C subunit 3 yes yes 2 6.6099E-09 129.16 By MS/MS By matching 3 1 1.1471 1.1135 57.135 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0957 1.1954 69.591 3 1 Median 1.2008 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26748000 14585000 12163000 0 0 0 0 0 0 26225000 14340000 11885000 522680 245080 277600 0 0 0 0 0 0 10769 2294 11207 53404;53405;53406;53407 53608;53609 53608 2 GEVAYIDGQVLVPPGYGQDVR EGQKVKGTVRRVVLRGEVAYIDGQVLVPPG DGQVLVPPGYGQDVRKWPQGAVPQLPPSAP R G E V R K 1 1 0 2 0 2 1 4 0 1 1 0 0 0 2 0 0 0 2 4 0 0 21 0 2231.1222 F8VPD4;P27708;H7BZB3 F8VPD4 1727 1747 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 8.0446E-12 78.486 By MS/MS By matching 1 1 0.6097 0.55978 53.302 2 Median 0.84718 0.81603 NaN 1 0 Median 0.43879 0.384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4846300 2783200 2063100 4264700 2394000 1870700 581560 389220 192340 0 0 0 0 0 0 0 0 0 0 0 0 10770 1057 11208 53408;53409 53610;53611 53611 2 GEVDVDVPK SMPDLDLHLKSPKAKGEVDVDVPKLEGDLK KSPKAKGEVDVDVPKLEGDLKGPHVDVSGP K G E P K L 0 0 0 2 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 3 0 0 9 0 956.48148 Q09666 Q09666 2402 2410 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.015941 57.96 By MS/MS 1 0.90268 0.87908 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90268 0.87908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3798200 2026900 1771300 0 0 0 0 0 0 0 0 0 3798200 2026900 1771300 0 0 0 0 0 0 10771 2749 11209 53410 53612 53612 1 GEVFNELVGK TSPFSYKNVLSLTNKGEVFNELVGKQRISG SLTNKGEVFNELVGKQRISGNLDSPEGGFD K G E G K Q 0 0 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 0 0 2 0 0 10 0 1090.5659 P05556 P05556 229 238 ITGB1 Integrin beta-1 yes yes 2 0.0085712 59.245 By MS/MS 1 1.1498 1.1189 NaN 1 Median 1.1498 1.1189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6132100 2746500 3385600 6132100 2746500 3385600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10772 1868 11210 53411 53613 53613 1 GEVGLLFTNR DEYKDNLHQVSKRLRGEVGLLFTNRTKEEV SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R G E N R T 0 1 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1104.5928 Q9UKD2 Q9UKD2 98 107 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.042746 30.254 By MS/MS 1 1.6401 1.5756 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6401 1.5756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7520600 2928300 4592400 0 0 0 0 0 0 7520600 2928300 4592400 0 0 0 0 0 0 0 0 0 10773 4308 11211 53412 53614 53614 1 GEVITTYCPANNEPIAR REENEGVYNGSWGGRGEVITTYCPANNEPI VITTYCPANNEPIARVRQASVADYEETVKK R G E A R V 2 1 2 0 1 0 2 1 0 2 0 0 0 0 2 0 2 0 1 1 0 0 17 0 1903.9098 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A0J9YWF7;H0YHM6;F8VVF2;F8WDY6 P49419 63 79 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 2.3433E-05 74.76 By MS/MS By matching 1 1 0.77355 0.7163 30.305 2 Median 0.58464 0.57813 NaN 1 0 Median 1.0235 0.88748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5915300 3333700 2581500 4248200 2591400 1656800 1667100 742350 924770 0 0 0 0 0 0 0 0 0 0 0 0 10774 318 11212 53413;53414 53615 53615 1 GEVLGDVLQLETLK EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ KGEVLGDVLQLETLKQEAATLAANNTQLQA K G E L K Q 0 0 0 1 0 1 2 2 0 0 4 1 0 0 0 0 1 0 0 2 0 0 14 0 1512.8399 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 406 419 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 9.3617E-08 98.353 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.0057 1.0116 35.203 6 Median NaN NaN NaN 0 0 Median 0.77482 0.67515 62.574 2 0 Median 0.91864 1.0215 NaN 1 0 Median 1.1667 1.0469 6.2186 2 0 Median 0.85934 0.91112 NaN 1 0 Median NaN NaN NaN 0 0 Median 113540000 53884000 59654000 0 0 0 104050000 49090000 54961000 6556800 3340200 3216500 1002000 476420 525560 1928400 976730 951670 0 0 0 10775 2905;77 11213 53415;53416;53417;53418;53419;53420 53616;53617;53618;53619;53620;53621 53617 6 GEVQVSDKER GTDDQTEICKQILTKGEVQVSDKERHTQLE QILTKGEVQVSDKERHTQLEQMFRDIATIV K G E E R H 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 0 2 0 0 10 1 1145.5677 Q9Y3A5;A0A087X020 Q9Y3A5 91 100 SBDS Ribosome maturation protein SBDS yes no 2 0.037395 47.198 By matching By matching By matching By MS/MS 1 1 1 1 1.0303 0.96549 8.2288 4 Median 1.0144 0.99542 NaN 1 0 Median 0.97725 0.93646 NaN 1 0 Median 1.0837 1.1085 NaN 1 0 Median 1.0465 0.92633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1816600 826340 990210 407260 188180 219080 98013 49557 48455 925940 402230 523710 385340 186370 198970 0 0 0 0 0 0 10776 100 11214 53421;53422;53423;53424 53622 53622 1 GEVTAADLFNSR ETETQNQGIKVAAIRGEVTAADLFNSRVID AIRGEVTAADLFNSRVIDQKTLHTLRVGRT R G E S R V 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 12 0 1278.6204 P58107;A0A075B730 P58107 1852 1863 EPPK1 Epiplakin yes no 2 4.3735E-05 95.573 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0487 1.0161 79.127 6 Median 0.4318 0.41223 133.76 2 0 Median 1.2509 1.0233 2.6499 2 0 Median NaN NaN NaN 0 0 Median 0.43129 0.37398 NaN 1 0 Median 0.97895 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median 50924000 30376000 20548000 27386000 20112000 7274100 20821000 9096000 11725000 0 0 0 178260 136100 42163 2539200 1032100 1507100 0 0 0 10777 2520 11215 53425;53426;53427;53428;53429;53430 53623;53624 53624 2 GEVTEMFSYEESNPK VPACIGFPVLVALAKGEVTEMFSYEESNPK GEVTEMFSYEESNPKDPAAVTESKEGTEAS K G E P K D 0 0 1 0 0 0 4 1 0 0 0 1 1 1 1 2 1 0 1 1 0 0 15 0 1745.7454 A0A3B3IUB5;Q8TCT9 A0A3B3IUB5 381 395 HM13 Minor histocompatibility antigen H13 yes no 2 2.7542E-09 118.48 By MS/MS By MS/MS 2 3 1.129 0.99241 3.0614 5 Median 0.98846 0.96998 4.1616 2 0 Median 1.1379 1.0245 1.8527 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31031000 14416000 16615000 19441000 9027700 10414000 11590000 5388800 6201200 0 0 0 0 0 0 0 0 0 0 0 0 10778 444 11216;11217 53431;53432;53433;53434;53435 53625;53626;53627;53628;53629;53630;53631 53627 198 7 GEVTEMFSYEESNPKDPAAVTESK VPACIGFPVLVALAKGEVTEMFSYEESNPK EESNPKDPAAVTESKEGTEASASKGLEKKE K G E S K E 2 0 1 1 0 0 5 1 0 0 0 2 1 1 2 3 2 0 1 2 0 0 24 1 2644.185 A0A3B3IUB5;Q8TCT9 A0A3B3IUB5 381 404 HM13 Minor histocompatibility antigen H13 yes no 3 1.6037E-21 97.974 By MS/MS By MS/MS 4 3 1.0175 1.0698 17.037 7 Median 0.94926 1.0152 19.943 4 0 Median 1.1627 1.1243 15.211 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122130000 60731000 61398000 104200000 52410000 51787000 17932000 8320400 9611600 0 0 0 0 0 0 0 0 0 0 0 0 10779 444 11218 53436;53437;53438;53439;53440;53441;53442 53632;53633;53634;53635;53636;53637;53638;53639;53640;53641 53632 10 GEVVDAVVTQVNK LYPVKYKAIVFRPFKGEVVDAVVTQVNKVG FKGEVVDAVVTQVNKVGLFTEIGPMSCFIS K G E N K V 1 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 5 0 0 13 0 1356.7249 P62487 P62487 82 94 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes yes 2 2.0352E-06 118.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1733 1.0328 22.414 6 Median NaN NaN NaN 0 0 Median 1.695 1.4591 NaN 1 0 Median 1.0924 1.0237 NaN 1 0 Median 1.3268 1.0969 7.2564 2 2 Median 0.75311 0.84765 NaN 1 1 Median 0.98076 0.77803 NaN 1 1 Median 23564000 11007000 12557000 0 0 0 2735000 1086700 1648300 11112000 4702700 6409300 2708000 1229100 1478900 5524100 3203800 2320300 1484400 784550 699890 10780 2590 11219 53443;53444;53445;53446;53447;53448 53642;53643;53644;53645;53646;53647;53648 53642 7 GEVVEGDPDK ITFQAQLVMVVRNPKGEVVEGDPDKVLRML VRNPKGEVVEGDPDKVLRMLYVWALCRDQD K G E D K V 0 0 0 2 0 0 2 2 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 0 1043.4771 O43615;M0QXM9 O43615 406 415 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.013464 40.002 By MS/MS By MS/MS 1 1 1.3505 1.2525 11.787 2 Median 1.1755 1.1523 NaN 1 0 Median 1.5514 1.3613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1575000 668830 906200 907230 425980 481250 667790 242850 424940 0 0 0 0 0 0 0 0 0 0 0 0 10781 1577 11220 53449;53450 53649;53650;53651 53650 3 GEVVRDFEIIDNHDYSYTVK AGKAKLDVQFAGTAKGEVVRDFEIIDNHDY DFEIIDNHDYSYTVKYTAVQQGNMAVTVTY K G E V K Y 0 1 1 3 0 0 2 1 1 2 0 1 0 1 0 1 1 0 2 3 0 0 20 1 2398.1441 Q14315 Q14315 912 931 FLNC Filamin-C yes yes 3 8.0153E-05 53.201 By MS/MS 1 1.1888 1.1954 NaN 1 Median 1.1888 1.1954 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9705100 4594900 5110200 9705100 4594900 5110200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10782 2871 11221 53451 53652 53652 1 GEYDVTMPK SMPDVDLHLKGPNVKGEYDVTMPKVESEIK KGPNVKGEYDVTMPKVESEIKVPDVELKSA K G E P K V 0 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 1 1 0 0 9 0 1038.4692 Q09666 Q09666 834 842 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0049104 59.245 By matching By matching By MS/MS 1 1 2 1.0309 1.0504 15.92 4 Median NaN NaN NaN 0 0 Median 1.2871 1.1219 NaN 1 0 Median 1.0554 1.1368 NaN 1 0 Median 0.94467 0.89071 14.008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13541000 6608000 6933000 0 0 0 3608600 1687700 1920900 4592300 2176000 2416300 5340200 2744300 2595900 0 0 0 0 0 0 10783 2749 11222 53452;53453;53454;53455 53653 53653 1 GEYNVYSTFQSHEPEFDYLK IFQQEQENKIQSHSRGEYNVYSTFQSHEPE YSTFQSHEPEFDYLKSLEIEEKINKIRWLP R G E L K S 0 0 1 1 0 1 3 1 1 0 1 1 0 2 1 2 1 0 3 1 0 0 20 0 2452.0859 P63151;E5RIY1;Q66LE6;H0YB06;Q00005 P63151 69 88 PPP2R2A;PPP2R2D;PPP2R2B Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform yes no 3 0.025501 14.015 By MS/MS By matching By matching By matching By matching 1 1 2 1 1 0.9337 0.87024 11.959 6 Median 0.93366 0.88458 NaN 1 0 Median 1.0797 0.92928 NaN 1 0 Median 0.83277 0.82749 4.8103 2 0 Median 0.93373 0.82002 NaN 1 0 Median 1.1523 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median 15949000 8578800 7370200 4274500 2200000 2074500 1831000 986780 844220 8884100 4954800 3929400 339030 173080 165950 620370 264190 356180 0 0 0 10784 2619 11223 53456;53457;53458;53459;53460;53461 53654;53655 53655 2 GFAAFLTELAER QKCPQELSRDPSGTKGFAAFLTELAERVPA GTKGFAAFLTELAERVPAILMSSMCILLDH K G F E R V 3 1 0 0 0 0 2 1 0 0 2 0 0 2 0 0 1 0 0 0 0 0 12 0 1323.6823 Q15021;E7EN77 Q15021 299 310 NCAPD2 Condensin complex subunit 1 yes no 2 0.0011423 56.563 By MS/MS By matching 1 1 1.4515 1.3676 33.248 2 Median 1.7336 1.7301 NaN 1 0 Median 1.2152 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 786310 333410 452900 666140 276800 389330 120170 56606 63563 0 0 0 0 0 0 0 0 0 0 0 0 10785 2915 11224 53462;53463 53656 53656 1 GFAFISFHR SRIYLAKDKTTGQSKGFAFISFHRREDAAR TTGQSKGFAFISFHRREDAARAIAGVSGFG K G F H R R 1 1 0 0 0 0 0 1 1 1 0 0 0 3 0 1 0 0 0 0 0 0 9 0 1080.5505 O75821;K7EP16;K7ENA8 O75821 281 289 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 0.00077011 98.997 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.1633 1.1555 14.542 7 Median 1.205 1.1925 4.4666 2 0 Median 1.1415 0.97829 2.2111 2 0 Median 1.2659 1.3292 11.698 2 1 Median 1.1633 1.0183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61928000 27952000 33976000 30361000 14074000 16288000 21949000 9844000 12105000 8951100 3726500 5224600 666260 307500 358760 0 0 0 0 0 0 10786 1697 11225 53464;53465;53466;53467;53468;53469;53470 53657;53658;53659;53660;53661;53662;53663;53664 53657 8 GFAFVEFSHLQDATR REVRLMRNKSSGQSRGFAFVEFSHLQDATR GFAFVEFSHLQDATRWMEANQHSLNILGQK R G F T R W 2 1 0 1 0 1 1 1 1 0 1 0 0 3 0 1 1 0 0 1 0 0 15 0 1723.8318 P98175 P98175 172 186 RBM10 RNA-binding protein 10 yes yes 2;3 3.6242E-06 89.548 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 2 1 1.2037 1.1958 14.863 9 Median 1.7438 1.761 NaN 1 0 Median 1.2134 1.077 NaN 1 0 Median 1.0859 1.1615 7.8288 3 0 Median 1.4695 1.3098 NaN 1 0 Median 1.1585 1.1913 0.53434 2 0 Median 1.694 1.4315 NaN 1 0 Median 19308000 9021500 10286000 556090 202530 353560 166470 83745 82724 13184000 6325300 6859000 78791 32315 46477 5139800 2295500 2844300 182420 82119 100300 10787 2671 11226 53471;53472;53473;53474;53475;53476;53477;53478;53479 53665;53666;53667;53668;53669;53670;53671;53672 53668 8 GFAFVQYVNER IFSKYGKIVGCSVHKGFAFVQYVNERNARA SVHKGFAFVQYVNERNARAAVAGEDGRMIA K G F E R N 1 1 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1328.6513 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;G3V4M8 B2R5W2 51 61 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 9.412E-10 174.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 3 6 6 1.1466 1.0613 66.764 23 Median 1.2989 1.2903 0.25922 2 2 Median 1.1559 0.98899 29.959 4 2 Median 1.0404 1.0724 12.387 2 0 Median 1.2919 1.0824 28.982 3 0 Median 1.0927 1.0983 4.654 6 0 Median 1.2372 0.96479 121.09 6 0 Median 1073300000 499020000 574320000 15280000 7004000 8276200 8279900 3878000 4401800 103670000 48724000 54947000 14400000 6223100 8177400 800720000 373090000 427630000 130980000 60097000 70882000 10788 582 11227 53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490;53491;53492;53493;53494;53495;53496;53497;53498;53499;53500;53501;53502 53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684;53685;53686;53687;53688;53689;53690;53691;53692;53693;53694;53695;53696;53697;53698;53699;53700;53701;53702;53703;53704;53705;53706 53678 34 GFAFVTFDDHDSVDK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 15 0 1698.7526 H0YH80;P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2 P09651 147 161 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2;3 6.6985E-10 122.51 By matching By MS/MS By MS/MS By MS/MS By matching 3 7 5 8 8 1.1094 1.0279 14.002 31 Median NaN NaN NaN 0 0 Median 1.1769 1.0052 3.921 3 0 Median 1.0688 1.0279 12.818 7 0 Median 1.2365 1.0396 4.6487 5 0 Median 1.0238 1.028 20.838 8 0 Median 1.1507 0.95725 12.097 8 0 Median 796030000 375800000 420230000 0 0 0 2741900 1165000 1576900 734270000 346190000 388080000 5829700 2553100 3276600 44285000 21867000 22417000 8899300 4025800 4873500 10789 1919;365;1183 11228 53503;53504;53505;53506;53507;53508;53509;53510;53511;53512;53513;53514;53515;53516;53517;53518;53519;53520;53521;53522;53523;53524;53525;53526;53527;53528;53529;53530;53531;53532;53533 53707;53708;53709;53710;53711;53712;53713;53714;53715;53716;53717;53718;53719;53720;53721;53722;53723;53724;53725;53726;53727;53728;53729;53730 53719 24 GFAFVTFDDHDSVDKIVIQK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL R G F Q K Y 1 0 0 4 0 1 0 1 1 2 0 2 0 3 0 1 1 0 0 3 0 0 20 1 2280.1426 H0YH80;P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2 P09651 147 166 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2;3;4 9.1839E-09 70.783 By MS/MS By matching By MS/MS By MS/MS 4 2 10 4 1.0131 1.0093 46.97 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0961 1.1671 42.258 4 0 Median 0.56709 0.50496 96.371 2 0 Median 0.95902 1.0193 30.811 10 0 Median 1.2247 1.0381 36.39 4 0 Linear 414140000 201330000 212810000 0 0 0 0 0 0 63091000 30231000 32859000 37586000 16712000 20875000 300250000 148690000 151560000 13209000 5691300 7518100 10790 1919;365;1183 11229 53534;53535;53536;53537;53538;53539;53540;53541;53542;53543;53544;53545;53546;53547;53548;53549;53550;53551;53552;53553 53731;53732;53733;53734;53735;53736;53737;53738;53739;53740;53741;53742;53743;53744;53745;53746;53747;53748;53749;53750;53751 53747 21 GFAFVTFDDHDTVDK ETIEVMEDRQSGKKRGFAFVTFDDHDTVDK GFAFVTFDDHDTVDKIVVQKYHTINGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 0 2 0 0 2 0 0 15 0 1712.7682 P51991 P51991 168 182 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 3.049E-09 135.66 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 8 4 8 6 1.0774 1.0639 19.866 28 Median 1.8529 1.8231 NaN 1 0 Median 1.379 1.1792 NaN 1 0 Median 1.0622 1.0484 11.607 8 0 Plateau 1.2512 1.0695 12.362 4 0 Median 1.0474 1.0441 26.293 8 0 Median 1.2617 1.0607 7.3301 6 0 Median 321390000 152610000 168780000 650120 226460 423660 966370 225450 740920 289260000 137830000 151420000 2258700 930970 1327700 26049000 12446000 13603000 2207900 948110 1259800 10791 2446 11230 53554;53555;53556;53557;53558;53559;53560;53561;53562;53563;53564;53565;53566;53567;53568;53569;53570;53571;53572;53573;53574;53575;53576;53577;53578;53579;53580;53581 53752;53753;53754;53755;53756;53757;53758;53759;53760;53761;53762;53763;53764;53765;53766;53767;53768;53769;53770;53771;53772 53766 21 GFAFVTFDDHDTVDKIVVQK ETIEVMEDRQSGKKRGFAFVTFDDHDTVDK TFDDHDTVDKIVVQKYHTINGHNCEVKKAL R G F Q K Y 1 0 0 4 0 1 0 1 1 1 0 2 0 3 0 0 2 0 0 4 0 0 20 1 2280.1426 P51991 P51991 168 187 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 5.5402E-06 47.09 By matching By MS/MS By matching By MS/MS By matching 1 2 2 5 1 1.0483 1.1062 12.002 11 Median NaN NaN NaN 0 0 Median 1.1326 1.0303 NaN 1 0 Median 1.0937 1.1919 4.4487 2 0 Median 1.3933 1.2407 8.3896 2 0 Median 1.0019 1.0664 6.2313 5 0 Median 1.0066 0.85268 NaN 1 0 Median 156440000 75584000 80858000 0 0 0 657220 289590 367630 37220000 17449000 19771000 2500800 902780 1598000 105590000 51677000 53912000 10476000 5265800 5210400 10792 2446 11231 53582;53583;53584;53585;53586;53587;53588;53589;53590;53591;53592 53773;53774;53775;53776;53777;53778;53779 53777 7 GFAFVTFESPADAK VEVLLMKDRETNKSRGFAFVTFESPADAKD RGFAFVTFESPADAKDAARDMNGKSLDGKA R G F A K D 3 0 0 1 0 0 1 1 0 0 0 1 0 3 1 1 1 0 0 1 0 0 14 0 1485.714 P38159;H3BT71;H0Y6E7;H3BR27;O75526;Q8N7X1;Q96E39;A0A1B0GUK8 P38159 50 63 RBMX;RBMXL2;RBMXL3;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1 no no 2 5.5273E-08 140.3 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 6 4 1.087 1.0059 18.448 18 Median NaN NaN NaN 0 0 Median 2.1262 1.8753 NaN 1 0 Median 0.87536 0.88422 15.968 3 0 Median 1.2209 1.0642 7.1925 4 0 Median 0.89726 0.91173 6.7898 6 0 Median 1.2694 1.0242 10.431 4 0 Median 189230000 97440000 91787000 0 0 0 730230 248050 482170 32264000 16987000 15278000 10284000 5068400 5215500 129760000 67617000 62146000 16187000 7520100 8666400 10793 2273;3632 11232 53593;53594;53595;53596;53597;53598;53599;53600;53601;53602;53603;53604;53605;53606;53607;53608;53609;53610 53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806;53807;53808;53809;53810;53811;53812;53813 53796 34 GFAFVTFESPADAKDAAR VEVLLMKDRETNKSRGFAFVTFESPADAKD FVTFESPADAKDAARDMNGKSLDGKAIKVE R G F A R D 5 1 0 2 0 0 1 1 0 0 0 1 0 3 1 1 1 0 0 1 0 0 18 1 1898.9163 P38159;H3BT71;H0Y6E7;H3BR27;Q96E39;A0A1B0GUK8 P38159 50 67 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 3.0357E-06 72.958 By matching By matching By MS/MS By matching 1 1 5 2 0.9334 0.97003 24.916 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72093 0.75475 NaN 1 0 Median 0.79925 0.7018 NaN 1 0 Median 0.9334 0.97003 28.032 5 0 Median 1.1955 1.0958 5.337 2 0 Median 34092000 17579000 16514000 0 0 0 0 0 0 5045700 2737100 2308700 167940 86101 81837 27129000 13953000 13176000 1750100 802550 947570 10794 2273;3632 11233 53611;53612;53613;53614;53615;53616;53617;53618;53619 53814;53815;53816;53817;53818 53815 5 GFAFVYFENVDDAK ADVSIVYDQQSRRSRGFAFVYFENVDDAKE RGFAFVYFENVDDAKEAKERANGMELDGRR R G F A K E 2 0 1 2 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 2 0 0 14 0 1620.746 P62995;H7BXF3 P62995 160 173 TRA2B Transformer-2 protein homolog beta yes no 2 0.00014046 80.763 By MS/MS By MS/MS By matching 2 2 1 0.87716 0.73042 23.985 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76081 0.77066 34.988 2 1 Median NaN NaN NaN 0 0 Median 0.82008 0.80241 31.891 2 0 Median 0.87716 0.73042 NaN 1 0 Median 11691000 6000800 5690100 0 0 0 0 0 0 6328600 3372200 2956400 0 0 0 4903200 2384700 2518500 459120 243940 215180 10795 2614 11234 53620;53621;53622;53623;53624 53819;53820;53821 53819 3 GFAFVYFENVDDAKEAK ADVSIVYDQQSRRSRGFAFVYFENVDDAKE AFVYFENVDDAKEAKERANGMELDGRRIRV R G F A K E 3 0 1 2 0 0 2 1 0 0 0 2 0 3 0 0 0 0 1 2 0 0 17 1 1948.9207 P62995;H7BXF3 P62995 160 176 TRA2B Transformer-2 protein homolog beta yes no 3 0.015886 21.233 By MS/MS 2 1.0209 1.1241 5.4269 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0209 1.1241 5.4269 2 0 Median NaN NaN NaN 0 0 Median 9290400 4372700 4917700 0 0 0 0 0 0 0 0 0 0 0 0 9290400 4372700 4917700 0 0 0 10796 2614 11235 53625;53626 53822;53823 53822 2 GFAFVYFER SGVNVVYDQRTGRSRGFAFVYFERIDDSKE RTGRSRGFAFVYFERIDDSKEAMERANGME R G F E R I 1 1 0 0 0 0 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 9 0 1134.5498 Q13595 Q13595 161 169 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.0036742 63.48 By MS/MS By matching By MS/MS By matching 2 1 4 3 1.1616 1.1662 12.827 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1189 1.1457 9.1476 2 1 Median 1.2917 1.0905 NaN 1 0 Median 1.1423 1.1959 15.989 4 0 Median 1.3411 1.1412 17.237 3 0 Median 18379000 8930500 9448500 0 0 0 0 0 0 3732400 1819400 1913100 331780 181870 149910 12132000 5973400 6158700 2182700 955800 1226900 10797 2828 11236 53627;53628;53629;53630;53631;53632;53633;53634;53635;53636 53824;53825;53826;53827;53828;53829 53825 6 GFALVGVGSEASSK LEIKFFENRANGQSKGFALVGVGSEASSKK KGFALVGVGSEASSKKLMDLLPKRELHGQN K G F S K K 2 0 0 0 0 0 1 3 0 0 1 1 0 1 0 3 0 0 0 2 0 0 14 0 1307.6721 F8WJN3;Q16630 F8WJN3 125 138 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 2.5062E-08 160.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1.2033 1.0015 47.42 7 Median 0.92774 0.8694 NaN 1 1 Median 0.80822 0.68602 NaN 1 1 Median 1.4262 1.3692 NaN 1 0 Median 1.691 1.4743 54.682 2 1 Median 2.0594 2.4298 NaN 1 0 Median 1.2033 0.98742 NaN 1 0 Median 266040000 128680000 137360000 14163000 7459100 6704000 4955800 3010900 1944900 198670000 99354000 99320000 39083000 14657000 24427000 748120 172810 575310 8416200 4026500 4389700 10798 1099 11237 53637;53638;53639;53640;53641;53642;53643;53644 53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841;53842 53832 13 GFALVGVGSEASSKK LEIKFFENRANGQSKGFALVGVGSEASSKK GFALVGVGSEASSKKLMDLLPKRELHGQNP K G F K K L 2 0 0 0 0 0 1 3 0 0 1 2 0 1 0 3 0 0 0 2 0 0 15 1 1435.7671 F8WJN3;Q16630 F8WJN3 125 139 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2;3 4.6013E-11 120.96 By MS/MS By matching 2 2 1.1547 1.1593 6.4823 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0273 1.1422 0.61032 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3779 1.238 7.8001 2 0 Median 30394000 13568000 16826000 0 0 0 0 0 0 27363000 12376000 14987000 0 0 0 0 0 0 3031000 1192400 1838600 10799 1099 11238 53645;53646;53647;53648 53843;53844;53845;53846 53846 4 GFASQVEQLISMGANVHSK HSETSATALMVAAGRGFASQVEQLISMGAN QVEQLISMGANVHSKASNGWMALDWAKHFG R G F S K A 2 0 1 0 0 2 1 2 1 1 1 1 1 1 0 3 0 0 0 2 0 0 19 0 2001.9942 Q9H6S0;D6RA70 Q9H6S0 518 536 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 3 0.0084122 22.653 By MS/MS By MS/MS 1 1 1.0213 1.0338 6.6605 2 Median 1.0255 0.98629 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0171 1.0837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4165100 2063400 2101700 3244800 1585800 1659000 0 0 0 920300 477540 442760 0 0 0 0 0 0 0 0 0 10800 3977 11239 53649;53650 53847;53848;53849 53847 3 GFAYIEFSDKESVR NRVTILCDKFSGHPKGFAYIEFSDKESVRT KGFAYIEFSDKESVRTSLALDESLFRGRQI K G F V R T 1 1 0 1 0 0 2 1 0 1 0 1 0 2 0 2 0 0 1 1 0 0 14 1 1646.794 Q86U42;B4DEH8;G3V4T2;H0YJH9 Q86U42 214 227 PABPN1 Polyadenylate-binding protein 2 yes no 2;3 0.00013109 65.805 By MS/MS By MS/MS By matching 2 1 1 0.94032 0.86365 113.62 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98657 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.12745 0.13934 NaN 1 1 Median 0.94032 0.86365 NaN 1 0 Median 28116000 22636000 5480500 0 0 0 0 0 0 6049100 2437400 3611700 0 0 0 21748000 19993000 1755200 318900 205320 113580 10801 3270 11240 53651;53652;53653;53654 53850;53851;53852 53851 3 GFAYVQFEDVR VDVYVPLDFYTRRPRGFAYVQFEDVRDAED RRPRGFAYVQFEDVRDAEDALHNLDRKWIC R G F V R D 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1329.6354 Q5JRI1;O75494;Q8WXF0 Q5JRI1 52 62 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 2 0.00011372 133.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 1.1487 1.0778 14.398 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98737 1.0232 6.5983 3 1 Median 1.4862 1.316 24.237 3 0 Plateau 1.099 1.1144 9.1343 4 0 Median 1.212 0.9887 10.586 4 0 Median 66961000 30911000 36050000 0 0 0 0 0 0 5740300 2757500 2982800 1319200 549760 769440 36653000 16536000 20116000 23249000 11068000 12181000 10802 1679;3519 11241 53655;53656;53657;53658;53659;53660;53661;53662;53663;53664;53665;53666;53667;53668 53853;53854;53855;53856;53857;53858;53859;53860;53861;53862 53859 10 GFAYVQFEDVRDAEDALHNLDRK VDVYVPLDFYTRRPRGFAYVQFEDVRDAED DVRDAEDALHNLDRKWICGRQIEIQFAQGD R G F R K W 3 2 1 4 0 1 2 1 1 0 2 1 0 2 0 0 0 0 1 2 0 0 23 2 2707.299 Q5JRI1;O75494 Q5JRI1 52 74 SRSF10 Serine/arginine-rich splicing factor 10 yes no 5 0.031114 13.188 By MS/MS 1 1.1567 1.3871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1567 1.3871 NaN 1 0 Median NaN NaN NaN 0 0 Median 3595200 1476700 2118500 0 0 0 0 0 0 0 0 0 0 0 0 3595200 1476700 2118500 0 0 0 10803 1679 11242 53669 53863 53863 1 GFCFITFKEEEPVKK ESIELPMDNKTNKRRGFCFITFKEEEPVKK GFCFITFKEEEPVKKIMEKKYHNVGLSKCE R G F K K I 0 0 0 0 1 0 3 1 0 1 0 3 0 3 1 0 1 0 0 1 0 0 15 2 1857.9335 Q14103;H0Y8G5;H0YA96 Q14103 224 238 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 3;4 0.0051163 55.841 By matching By MS/MS By matching 1 2 1 1.0595 1.0944 17.472 4 Median NaN NaN NaN 0 0 Median 1.3731 1.3598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89013 0.96961 11.697 2 1 Median 1.161 1.1371 NaN 1 0 Median 32865000 16921000 15944000 0 0 0 1143400 565500 577900 0 0 0 0 0 0 31493000 16248000 15246000 228130 108010 120120 10804 2854 11243 53670;53671;53672;53673 53864;53865 53865 2 GFCFLEYEDHK DVILYHQPDDKKKNRGFCFLEYEDHKSAAQ KKNRGFCFLEYEDHKSAAQARRRLMSGKVK R G F H K S 0 0 0 1 1 0 2 1 1 0 1 1 0 2 0 0 0 0 1 0 0 0 11 0 1443.6129 B7Z645;O43390;B4DT28;O60506 O43390 290 300 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2;3 0.00014063 87.639 By matching By matching By matching By MS/MS 1 3 2 3 1.0987 1.0956 12.669 9 Median NaN NaN NaN 0 0 Median 1.3773 1.1731 NaN 1 0 Median 1.1967 1.2719 10.898 3 0 Median 1.302 1.1294 23.671 2 0 Median 1.038 1.049 2.8031 3 0 Median NaN NaN NaN 0 0 Median 40730000 19355000 21375000 0 0 0 4422600 1775000 2647600 6251400 2849300 3402000 326580 162290 164280 29729000 14568000 15161000 0 0 0 10805 1568;1619;634 11244 53674;53675;53676;53677;53678;53679;53680;53681;53682 53866;53867;53868;53869;53870;53871 53869 6 GFDALQESSLDSGMSGR NLQKVSRRGKELRPKGFDALQESSLDSGMS DALQESSLDSGMSGRKRKASISLTDDEVDD K G F G R K 1 1 0 2 0 1 1 3 0 0 2 0 1 1 0 4 0 0 0 0 0 0 17 0 1755.7734 Q96L91;A0A0A0MR80 Q96L91 920 936 EP400 E1A-binding protein p400 yes no 2 7.682E-24 131.13 By MS/MS By matching 3 1 1.0846 1.1512 26.571 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93612 0.98741 18.307 3 2 Median 1.9411 1.6864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30152000 15278000 14874000 0 0 0 0 0 0 29612000 15115000 14498000 539800 163920 375880 0 0 0 0 0 0 10806 3700 11245;11246 53683;53684;53685;53686 53872;53873;53874;53875 53875 1813 4 GFDEYMK TVQQLEGRWRLVDSKGFDEYMKELGVGIAL RWRLVDSKGFDEYMKELGVGIALRKMGAMA K G F M K E 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 7 0 888.36875 Q01469 Q01469 18 24 FABP5 Fatty acid-binding protein, epidermal yes yes 2 0.007586 88.734 By matching By MS/MS By matching By matching 2 2 1 1 1.1097 0.99405 29.071 6 Median 1.186 1.1052 8.2223 2 0 Median 1.0917 0.92471 3.4561 2 0 Median 1.1164 1.1035 NaN 1 0 Median 0.64262 0.52524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32847000 14792000 18055000 8400400 3655200 4745200 21202000 9565600 11636000 2477200 1123000 1354300 767850 448180 319660 0 0 0 0 0 0 10807 2685 11247 53687;53688;53689;53690;53691;53692 53876 53876 1 GFDILGIKPVQR WRMLLCEAVAAVMAKGFDILGIKPVQRM__ MAKGFDILGIKPVQRM______________ K G F Q R M 0 1 0 1 0 1 0 2 0 2 1 1 0 1 1 0 0 0 0 1 0 0 12 1 1341.7769 P54136 P54136 648 659 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2;3 0.00062516 128.69 By MS/MS By matching By matching By matching 2 2 2 1 1.1209 1.0816 10.495 7 Median 1.0926 1.0963 4.8528 2 0 Median 1.0707 0.98932 12.607 2 0 Median 1.1388 1.2096 6.3398 2 0 Median 1.1209 1.0278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27289000 13071000 14218000 19809000 9942000 9867200 2015300 748470 1266800 5385800 2344800 3041000 78650 35699 42951 0 0 0 0 0 0 10808 2480 11248 53693;53694;53695;53696;53697;53698;53699 53877;53878;53879;53880 53877 4 GFDPNQLSVATLLFEGDR SFLDGLKKFYITKFKGFDPNQLSVATLLFE PNQLSVATLLFEGDREKVLQHEKQVYDIAA K G F D R E 1 1 1 2 0 1 1 2 0 0 3 0 0 2 1 1 1 0 0 1 0 0 18 0 1977.9796 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 457 474 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 1.2292E-05 51.211 By matching By MS/MS 1 1 1.0254 0.95291 8.3833 2 Median 1.0096 1.0111 NaN 1 0 Median 1.0414 0.89807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080600 1030100 1050500 665470 345980 319490 1415200 684120 731030 0 0 0 0 0 0 0 0 0 0 0 0 10809 1439 11249 53700;53701 53881;53882 53882 2 GFDQDMANK IGLDVTVMVRSILLRGFDQDMANKIGEHME RSILLRGFDQDMANKIGEHMEEHGIKFIRQ R G F N K I 1 0 1 2 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1024.4284 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9 E9PIR7 227 235 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.0032979 66.073 By MS/MS By MS/MS 1 1 1.2425 1.1227 55.335 2 Median 1.7293 1.6604 NaN 1 0 Median 0.89266 0.75919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8393900 3771300 4622600 2728400 891450 1836900 5665500 2879900 2785600 0 0 0 0 0 0 0 0 0 0 0 0 10810 11 11250 53702;53703 53883;53884 53884 2 GFDQQGLNPTTLK PQINIPLPPRPNLNRGFDQQGLNPTTLKAI NRGFDQQGLNPTTLKAIGQAPSNLTMNPSN R G F L K A 0 0 1 1 0 2 0 2 0 0 2 1 0 1 1 0 2 0 0 0 0 0 13 0 1417.7201 Q14686 Q14686 1269 1281 NCOA6 Nuclear receptor coactivator 6 yes yes 2 0.00054412 81.865 By MS/MS 1 1.2574 1.3873 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2574 1.3873 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12551000 5735300 6815800 0 0 0 0 0 0 12551000 5735300 6815800 0 0 0 0 0 0 0 0 0 10811 2891 11251 53704 53885 53885 1 GFDQTINLILDESHER AVITSDGRMIVGTLKGFDQTINLILDESHE FDQTINLILDESHERVFSSSQGVEQVVLGL K G F E R V 0 1 1 2 0 1 2 1 1 2 2 0 0 1 0 1 1 0 0 0 0 0 16 0 1885.917 O95777;F2Z2Y6;C9JIZ0;C9JNV3 O95777 29 44 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes no 3 0.012807 22.475 By MS/MS By matching 1 1 1.0892 0.94703 9.0792 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99748 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1893 0.88814 NaN 1 0 Median 8689600 3961800 4727800 0 0 0 0 0 0 3040500 1473300 1567100 0 0 0 0 0 0 5649200 2488500 3160700 10812 1792 11252 53705;53706 53886 53886 1 GFDTSSSSSNSAASSSFK LACESAKPGTKSGFKGFDTSSSSSNSAASS TSSSSSNSAASSSFKFGVSSSSSGPSQTLT K G F F K F 2 0 1 1 0 0 0 1 0 0 0 1 0 2 0 9 1 0 0 0 0 0 18 0 1752.7439 P49790 P49790 887 904 NUP153 Nuclear pore complex protein Nup153 yes yes 2 5.1617E-06 74.678 By MS/MS By MS/MS 1 1 1.3286 1.3384 31.241 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96333 1.0731 NaN 1 0 Median 1.8323 1.6692 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5850700 2751000 3099700 0 0 0 0 0 0 4762000 2476400 2285700 1088700 274630 814040 0 0 0 0 0 0 10813 2400 11253 53707;53708 53887;53888;53889 53888 3 GFDVFNALDLMENK LLDLMSDALVLAKMKGFDVFNALDLMENKT KGFDVFNALDLMENKTFLEKLKFGIGDGNL K G F N K T 1 0 2 2 0 0 1 1 0 0 2 1 1 2 0 0 0 0 0 1 0 0 14 0 1611.7603 P30419;Q5VUC6;O60551 P30419 446 459 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase;Glycylpeptide N-tetradecanoyltransferase 2 yes no 2 0.0013066 49.35 By MS/MS By matching By MS/MS By MS/MS 2 3 2 1 1.2323 1.1411 13.437 8 Median 1.1672 1.1265 7.1377 2 0 Median 1.3471 1.1493 12.387 3 0 Median 0.95733 0.93587 2.3675 2 0 Median 1.3164 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37242000 17608000 19634000 9398000 4308500 5089600 4106600 1740700 2365900 23089000 11269000 11819000 649200 290000 359200 0 0 0 0 0 0 10814 2193 11254;11255 53709;53710;53711;53712;53713;53714;53715;53716 53890;53891;53892;53893;53894;53895;53896 53893 934 7 GFEAAVAAGAK KFPGINYPVLTPNLKGFEAAVAAGAKEVVI PNLKGFEAAVAAGAKEVVIFGAASELFTKK K G F A K E 5 0 0 0 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 11 0 990.51345 P35914 P35914 112 122 HMGCL Hydroxymethylglutaryl-CoA lyase, mitochondrial yes yes 2 0.00014063 90.657 By MS/MS By MS/MS 1 2 2.249 1.8904 66.218 3 Median 0.89123 0.82034 NaN 1 0 Median 2.3666 2.3947 33.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23935000 10208000 13727000 12697000 6563300 6133500 11238000 3645100 7593100 0 0 0 0 0 0 0 0 0 0 0 0 10815 2252 11256 53717;53718;53719 53897;53898;53899;53900 53897 4 GFEDGIVQLK IRPTVQEDGGDVIYKGFEDGIVQLKLQGSC DVIYKGFEDGIVQLKLQGSCTSCPSSIITL K G F L K L 0 0 0 1 0 1 1 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1104.5815 Q9UMS0;C9J8Q1;F8W9P7;H7C537 Q9UMS0 196 205 NFU1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial yes no 2 0.0015788 64.265 By MS/MS By matching By matching 1 1 1 1.062 0.93969 7.6245 3 Median 1.062 0.98832 NaN 1 0 Median 1.0873 0.93969 NaN 1 0 Median 0.80864 0.85078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14118000 7479300 6638600 7151800 3381800 3770000 1689600 857840 831800 5276400 3239600 2036800 0 0 0 0 0 0 0 0 0 10816 4333 11257 53720;53721;53722 53901 53901 1 GFEKPTENSSAVLLQWHEK LDRNGVDLLMKYIYKGFEKPTENSSAVLLQ PTENSSAVLLQWHEKALAVGGLGSIIRVLT K G F E K A 1 0 1 0 0 1 3 1 1 0 2 2 0 1 1 2 1 1 0 1 0 0 19 1 2199.096 Q9BPX5 Q9BPX5 115 133 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 3;4 0.0049609 24.893 By matching By MS/MS 1 2 0.97597 0.98645 8.5787 3 Median 0.98333 0.98645 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90636 0.9214 10.778 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15548000 7797400 7750700 3323800 1634700 1689100 0 0 0 12224000 6162800 6061600 0 0 0 0 0 0 0 0 0 10817 3779 11258 53723;53724;53725 53902;53903 53902 2 GFELTFK VRETHSLFFRSLKDRGFELTFKTADDPSLS FFRSLKDRGFELTFKTADDPSLSLIKYGEF R G F F K T 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 7 0 840.43815 P39656;A0A0C4DGS1;U3KQ84 P39656 71 77 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 0.013989 75.311 By MS/MS By matching By MS/MS By matching By matching 3 2 2 1 1 1.2058 1.1598 11.998 9 Median 1.1692 1.0857 4.7181 3 0 Median 1.2859 1.1041 7.7095 2 0 Median 1.1594 1.1753 2.3453 2 1 Median 1.5751 1.3226 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8673 1.531 NaN 1 0 Median 32691000 14675000 18015000 18181000 8487600 9693400 1791000 659690 1131300 12131000 5293900 6837100 428650 168800 259840 0 0 0 159280 65454 93824 10818 253 11259 53726;53727;53728;53729;53730;53731;53732;53733;53734 53904;53905;53906 53904 3 GFESPSDNSSAMLLQWHEK LDKNGVDLLMKYIYKGFESPSDNSSAMLLQ PSDNSSAMLLQWHEKALAAGGVGSIVRVLT K G F E K A 1 0 1 1 0 1 2 1 1 0 2 1 1 1 1 4 0 1 0 0 0 0 19 0 2161.9739 O15511;B1ALC0 O15511 113 131 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 3 3.0613E-08 69.737 By MS/MS By matching By MS/MS 1 1 2 0.91966 0.86306 6.9183 4 Median 0.89057 0.84019 NaN 1 0 Median 1.0108 0.88655 NaN 1 0 Median 0.87697 0.83878 11.001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40790000 21590000 19200000 14042000 7434000 6607500 324150 134470 189680 26424000 14021000 12403000 0 0 0 0 0 0 0 0 0 10819 1551 11260;11261 53735;53736;53737;53738 53907;53908;53909;53910;53911;53912 53911 501 6 GFEVVYMTEPIDEYCVQQLK EQVANSAFVERVRKRGFEVVYMTEPIDEYC YMTEPIDEYCVQQLKEFDGKSLVSVTKEGL R G F L K E 0 0 0 1 1 2 3 1 0 1 1 1 1 1 1 0 1 0 2 3 0 0 20 0 2447.1389 P08238 P08238 507 526 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.00041455 36.847 By MS/MS By matching 1 1 0.97236 0.91704 7.9065 2 Median 0.97783 0.96977 NaN 1 0 Median 0.96692 0.86718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2744100 1274700 1469400 1733200 807020 926210 1010900 467670 543210 0 0 0 0 0 0 0 0 0 0 0 0 10820 1899 11262 53739;53740 53913;53914 53913 2 GFFDPNTEENLTYLQLK EELSEILSDPSDDTKGFFDPNTEENLTYLQ FDPNTEENLTYLQLKERCIKDEETGLCLLP K G F L K E 0 0 2 1 0 1 2 1 0 0 3 1 0 2 1 0 2 0 1 0 0 0 17 0 2027.984 P15924 P15924 2414 2430 DSP Desmoplakin yes yes 2 1.4576E-07 75.78 By MS/MS By matching By matching By matching By matching 2 1 1 2 1 0.62772 0.65651 23.779 7 Median 0.56823 0.55393 11.492 2 1 Median 0.95963 0.83013 NaN 1 0 Median 0.72521 0.80595 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65922 0.68658 6.332 2 0 Median 0.52133 0.43453 NaN 1 0 Median 13061000 7909800 5151400 6742500 4085700 2656800 563420 280240 283180 1820700 976340 844380 0 0 0 3560900 2343800 1217100 373720 223790 149930 10821 2021 11263 53741;53742;53743;53744;53745;53746;53747 53915;53916 53915 2 GFFDPNTHENLTYLQLLER EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLERCVEDPETGLCLLPLT K G F E R C 0 1 2 1 0 1 2 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2306.1331 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2989 3007 EPPK1;PLEC Epiplakin;Plectin no no 2;3 3.0664E-08 69.605 By MS/MS By MS/MS By matching By MS/MS By matching 3 4 1 1 3 1.0967 1.0674 39.832 12 Median 1.0743 1.0793 5.9685 3 0 Median 1.176 0.9711 14.96 4 0 Median 1.0042 1.1201 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4289 1.5206 NaN 1 0 Median 1.195 1.0082 77.062 3 0 Median 72138000 33074000 39064000 10968000 4931800 6036100 58340000 26733000 31606000 260360 128410 131940 0 0 0 1867400 850040 1017400 702670 430290 272380 10822 2933;2520 11264 53748;53749;53750;53751;53752;53753;53754;53755;53756;53757;53758;53759 53917;53918;53919;53920;53921;53922;53923;53924;53925;53926;53927 53919 11 GFFDPNTHENLTYLQLLQR EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLQRATLDPETGLLFLSLS K G F Q R A 0 1 2 1 0 2 1 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2305.1491 P58107;A0A075B730 P58107 5053 5071 EPPK1 Epiplakin yes no 3 8.2921E-09 83.418 By MS/MS By matching 4 1 1.1012 1.0273 24.986 5 Median 1.1262 1.1164 24.104 4 0 Median 1.1012 0.89257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20276000 9361300 10915000 9133900 4009900 5124000 11143000 5351400 5791100 0 0 0 0 0 0 0 0 0 0 0 0 10823 2520 11265 53760;53761;53762;53763;53764 53928;53929;53930 53929 3 GFFDPNTHENLTYR EEMNRVLADPSDDTKGFFDPNTHENLTYRQ KGFFDPNTHENLTYRQLLERCVEDPETGLR K G F Y R Q 0 1 2 1 0 0 1 1 1 0 1 0 0 2 1 0 2 0 1 0 0 0 14 0 1709.7798 Q15149;H0YDN1 Q15149 3648 3661 PLEC Plectin yes no 2;3 2.4126E-08 108.7 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 3 2 3 3 1.0826 0.98431 22.266 15 Median 0.96507 0.9351 10.635 3 1 Median 1.1687 0.98431 NaN 1 0 Median 0.96688 1.015 18.446 3 0 Median 1.0026 0.87111 16.531 2 0 Median 1.2678 1.3241 12.023 3 0 Median 1.4403 1.1867 26.268 3 0 Plateau 104600000 54387000 50209000 61411000 33063000 28349000 2059000 877890 1181100 26936000 13954000 12982000 1549800 699060 850730 11674000 5345400 6328600 966570 447630 518940 10824 2933 11266 53765;53766;53767;53768;53769;53770;53771;53772;53773;53774;53775;53776;53777;53778;53779 53931;53932;53933;53934;53935;53936;53937;53938;53939;53940 53932 9 GFFDPNTHENLTYVQLLR EEMNRVLADPSDDTKGFFDPNTHENLTYVQ DPNTHENLTYVQLLRRCVPDPDTGLYMLQL K G F L R R 0 1 2 1 0 1 1 1 1 0 3 0 0 2 1 0 2 0 1 1 0 0 18 0 2163.0749 P58107;A0A075B730 P58107 2385 2402 EPPK1 Epiplakin yes no 2;3 7.1778E-16 137.19 By MS/MS By MS/MS By matching By MS/MS By MS/MS 8 9 2 3 3 1.1175 1.0099 30.091 25 Median 1.1096 1.0537 19.311 8 1 Median 1.1392 1.002 25.942 9 2 Median 0.69143 0.7473 28.689 2 0 Median NaN NaN NaN 0 0 Median 1.0955 1.156 53.688 3 0 Plateau 1.7811 1.529 27.753 3 0 Plateau 298720000 136550000 162170000 199180000 91314000 107860000 76306000 34515000 41791000 1919100 1188000 731100 0 0 0 6565400 2963500 3602000 14752000 6572600 8179800 10825 2520 11267 53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804 53941;53942;53943;53944;53945;53946;53947;53948;53949;53950;53951;53952;53953;53954;53955;53956;53957;53958;53959;53960;53961;53962;53963;53964 53944 24 GFFDPNTHENLTYVQLLRR EEMNRVLADPSDDTKGFFDPNTHENLTYVQ PNTHENLTYVQLLRRCVPDPDTGLYMLQLA K G F R R C 0 2 2 1 0 1 1 1 1 0 3 0 0 2 1 0 2 0 1 1 0 0 19 1 2319.176 P58107;A0A075B730 P58107 2385 2403 EPPK1 Epiplakin yes no 4 0.064172 5.8142 By MS/MS 1 1.1489 1.2486 NaN 1 Median 1.1489 1.2486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4037400 1733600 2303800 4037400 1733600 2303800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10826 2520 11268 53805 53965;53966 53965 2 GFFEGTIASK IMPLDTNWPLLTVSKGFFEGTIASKGKGGA LTVSKGFFEGTIASKGKGGALAADIDIDTV K G F S K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 0 0 0 10 0 1055.5288 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITI7 P53621 816 825 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00033827 85.676 By MS/MS By MS/MS By matching By matching 1 1 1 2 0.9273 0.87283 11.037 5 Median 0.87029 0.87283 NaN 1 0 Median 1.0113 0.85574 NaN 1 0 Median 0.9273 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95426 0.81714 14.221 2 0 Median 31323000 15594000 15729000 15901000 7980700 7920000 11287000 5594100 5692600 2899200 1376200 1523000 0 0 0 0 0 0 1236700 643260 593440 10827 2473 11269 53806;53807;53808;53809;53810 53967;53968;53969 53968 3 GFFGFPGPR ______________________________ LFDLFRGFFGFPGPRSHRDPFFGGMTRDED R G F P R S 0 1 0 0 0 0 0 3 0 0 0 0 0 3 2 0 0 0 0 0 0 0 9 0 980.48684 O00165;Q5VYD6 O00165 9 17 HAX1 HCLS1-associated protein X-1 yes no 2 0.0076126 50.966 By MS/MS By matching 1 1 1.1191 1.0249 1.3458 2 Median 1.0457 1.0152 NaN 1 0 Median 1.1976 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2051900 1041400 1010400 1807700 925970 881710 244170 115470 128700 0 0 0 0 0 0 0 0 0 0 0 0 10828 1444 11270 53811;53812 53970 53970 1 GFFHGVR VKFIHDQTSPNPKYRGFFHGVREIVREQGL TSPNPKYRGFFHGVREIVREQGLKGTYQGL R G F V R E 0 1 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 1 0 0 7 0 818.41876 P53007;B4DP62 P53007 163 169 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 2 0.015415 71.575 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0125 0.89727 32.082 4 Median 0.95108 0.88954 NaN 1 0 Median 1.4855 1.2378 NaN 1 0 Median 0.60292 0.56755 NaN 1 0 Median 1.0778 0.90507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33138000 15338000 17800000 25446000 12143000 13303000 5277300 1862500 3414800 1943700 1130100 813600 470450 202130 268320 0 0 0 0 0 0 10829 2464 11271 53813;53814;53815;53816 53971;53972;53973;53974 53972 4 GFFIKPTVFGGVQDDMR EGAKLLCGGERFGERGFFIKPTVFGGVQDD FIKPTVFGGVQDDMRIAKEEIFGPVQPLFK R G F M R I 0 1 0 2 0 1 0 3 0 1 0 1 1 3 1 0 1 0 0 2 0 0 17 1 1912.9506 P30837 P30837 395 411 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 3 0.00066083 36.193 By MS/MS By matching 1 1 1.135 1.0886 14.682 2 Median 0.97506 0.98126 NaN 1 0 Median 1.3211 1.2077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3578100 1572900 2005200 2417900 1105600 1312300 1160200 467310 692910 0 0 0 0 0 0 0 0 0 0 0 0 10830 2199 11272 53817;53818 53975 53975 1 GFFNGLR VPLSIGYCASKHALRGFFNGLRTELATYPG CASKHALRGFFNGLRTELATYPGIIVSNIC R G F L R T 0 1 1 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 809.41842 Q9Y394;H0YJ66;H0YJR8;H0YJE4 Q9Y394 212 218 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 2 0.02182 58.661 By MS/MS By matching 1 1 1.3617 1.2367 22.671 2 Median 1.1026 1.0535 NaN 1 0 Median 1.6817 1.4517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3954900 1864700 2090200 3644400 1750200 1894200 310450 114420 196030 0 0 0 0 0 0 0 0 0 0 0 0 10831 4408 11273 53819;53820 53976 53976 1 GFFNIYHPLDPVAYR GVDRIDENYSLPTCKGFFNIYHPLDPVAYR GFFNIYHPLDPVAYRLEPMIVPDLDLKAVL K G F Y R L 1 1 1 1 0 0 0 1 1 1 1 0 0 2 2 0 0 0 2 1 0 0 15 0 1807.9046 Q9Y6Y8 Q9Y6Y8 816 830 SEC23IP SEC23-interacting protein yes yes 3 0.024628 18.833 By MS/MS By matching 1 1 0.82464 0.762 20.357 2 Median 0.88595 0.87997 NaN 1 0 Median 0.76757 0.65984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3554300 1930100 1624300 1777900 889670 888260 1776400 1040400 736000 0 0 0 0 0 0 0 0 0 0 0 0 10832 4502 11274 53821;53822 53977;53978 53978 2 GFGDGYNGYGGGPGGGNFGGSPGYGGGR GSNFRGGSDGYGSGRGFGDGYNGYGGGPGG GGGNFGGSPGYGGGRGGYGGGGPGYGNQGG R G F G R G 0 1 2 1 0 0 0 16 0 0 0 0 0 2 2 1 0 0 3 0 0 0 28 0 2494.0323 P22626 P22626 239 266 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 5.8113E-76 193.3 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 2 12 4 0.70117 0.71149 11.357 25 Median 1.0379 1.0336 NaN 1 0 Median 0.95223 0.83373 1.8507 2 0 Median 0.68598 0.68965 4.1662 4 0 Median 0.91929 0.76155 9.6167 2 0 Median 0.67569 0.68273 8.0957 12 1 Median 0.87921 0.76814 5.7019 4 0 Median 341580000 197370000 144200000 3502000 1390300 2111700 744220 334950 409270 72002000 41746000 30256000 1137700 592000 545680 261960000 152120000 109840000 2228800 1188200 1040600 10833 2103 11275 53823;53824;53825;53826;53827;53828;53829;53830;53831;53832;53833;53834;53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847 53979;53980;53981;53982;53983;53984;53985;53986;53987;53988;53989;53990;53991;53992;53993;53994;53995;53996;53997;53998;53999;54000;54001;54002;54003;54004;54005;54006;54007;54008 54000 30 GFGDHIHWR LLLVISSDGHNGLGKGFGDHIHWRTLEDGK HNGLGKGFGDHIHWRTLEDGKKEAAASGLP K G F W R T 0 1 0 1 0 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 0 0 9 0 1123.5312 O95881;V9GY50;V9GYV4 O95881 33 41 TXNDC12 Thioredoxin domain-containing protein 12 yes no 2 0.006443 91.041 By MS/MS By MS/MS 1 1 1.6008 1.3286 NaN 1 Median NaN NaN NaN 0 0 Median 1.6008 1.3286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2467700 1274000 1193700 0 0 0 2467700 1274000 1193700 0 0 0 0 0 0 0 0 0 0 0 0 10834 1802 11276 53848;53849 54009;54010 54010 2 GFGDSFGR SMERDFGRGDIGINRGFGDSFGRLGGGMGS GDIGINRGFGDSFGRLGGGMGSMNSVTGGM R G F G R L 0 1 0 1 0 0 0 3 0 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 841.37187 A0A0A0MQW0;A0A0A0MR39;A0A0C4DGV1;H0YN19;A0A087WUT0 A0A0A0MQW0 427 434 MYEF2 yes no 2 0.015483 50.127 By matching By matching By MS/MS By matching 1 2 2 1 0.81145 0.84507 18.272 6 Median NaN NaN NaN 0 0 Median 1.3727 1.1844 NaN 1 0 Median 0.73653 0.77297 1.9675 2 0 Median NaN NaN NaN 0 0 Median 0.81145 0.83823 11.792 2 0 Median 1.2129 1.0401 NaN 1 0 Median 15221000 8443800 6777300 0 0 0 1229200 516560 712600 6969600 4122800 2846800 0 0 0 5693100 3263400 2429600 1329300 540990 788290 10835 149 11277 53850;53851;53852;53853;53854;53855 54011 54011 1 GFGFGGFAISAGK ______________________________ KRGFGFGGFAISAGKKEEPKLPQQSHSAFG R G F G K K 2 0 0 0 0 0 0 5 0 1 0 1 0 3 0 1 0 0 0 0 0 0 13 0 1214.6084 Q86XP3;J3QRI2;J3KTK9 Q86XP3 13 25 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.0034173 44.318 By matching By MS/MS By matching 1 3 1 0.96198 1.0417 26.081 5 Median NaN NaN NaN 0 0 Median 0.61964 0.59113 NaN 1 0 Median 0.96198 1.0417 1.9878 3 0 Median 1.3016 1.1135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7583300 3662400 3920900 0 0 0 230980 155350 75631 7029900 3369500 3660400 322420 137530 184890 0 0 0 0 0 0 10836 3302 11278 53856;53857;53858;53859;53860 54012;54013;54014 54013 3 GFGFGLVK SYADLGKAARDIFNKGFGFGLVKLDVKTKS ARDIFNKGFGFGLVKLDVKTKSCSGVEFST K G F V K L 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 823.45922 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 32 39 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.0077692 65.672 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 2 5 1.4184 1.2327 17.681 17 Median 1.0651 0.98815 7.6806 4 0 Median 1.5603 1.3254 7.9925 4 0 Median 1.3717 1.3147 NaN 1 0 Median 1.4152 1.2041 NaN 1 0 Median 1.5951 1.6086 20.394 2 0 Median 1.4206 1.2229 9.0498 5 0 Median 95495000 42468000 53028000 74988000 34399000 40589000 4344000 1715700 2628400 5058400 1972900 3085500 1076400 411340 665070 5713500 2230600 3482900 4315400 1738400 2577000 10837 151 11279 53861;53862;53863;53864;53865;53866;53867;53868;53869;53870;53871;53872;53873;53874;53875;53876;53877 54015;54016;54017;54018;54019;54020;54021;54022;54023;54024;54025;54026;54027;54028;54029;54030;54031;54032 54016 18 GFGFGQGAGALVHSE EIYCKGCYAKNFGPKGFGFGQGAGALVHSE GFGFGQGAGALVHSE_______________ K G F S E - 2 0 0 0 0 1 1 5 1 0 1 0 0 2 0 1 0 0 0 1 0 0 15 0 1432.6735 E9PP21;P21291 E9PP21 146 160 CSRP1 Cysteine and glycine-rich protein 1 yes no 2 7.4526E-14 125.48 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159660000 0 0 97463000 0 0 5639100 0 0 52537000 0 0 4023700 0 0 0 0 0 0 0 0 10838 977 11280 53878;53879;53880;53881;53882;53883 54033;54034;54035;54036;54037;54038 54034 6 GFGFILFK VDCTIKMDPNTGRSRGFGFILFKDAASVEK PNTGRSRGFGFILFKDAASVEKVLDQKEHR R G F F K D 0 0 0 0 0 0 0 2 0 1 1 1 0 3 0 0 0 0 0 0 0 0 8 0 927.52182 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 112 119 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 1;2 0.0011809 94.669 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 3 4 6 2 1.172 1.1123 14.388 20 Median 1.4167 1.3782 5.9349 3 0 Plateau 1.2655 1.0778 1.0721 2 0 Median 1.1127 1.1007 1.6682 3 0 Plateau 1.4235 1.1915 8.2232 4 0 Median 1.0771 1.1017 7.9734 6 0 Median 1.0276 0.83029 16.659 2 0 Median 309930000 142490000 167450000 4496200 1814100 2682200 57996000 25259000 32737000 80504000 36807000 43696000 8368400 3330200 5038300 154360000 73368000 80995000 4207400 1907300 2300100 10839 805 11281 53884;53885;53886;53887;53888;53889;53890;53891;53892;53893;53894;53895;53896;53897;53898;53899;53900;53901;53902;53903 54039;54040;54041;54042;54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056 54048 18 GFGFITFEDEQSVDQAVNMHFHDIMGK TEVVMIYDAEKQRPRGFGFITFEDEQSVDQ VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ R G F G K K 1 0 1 3 0 2 2 3 2 2 0 1 2 4 0 1 1 0 0 2 0 0 27 0 3098.3902 K7EQ55;K7EK33;Q96EP5;K7EQ02 K7EQ55 155 181 DAZAP1 DAZ-associated protein 1 yes no 4 0.0095169 18.776 By matching By MS/MS 1 1 1.31 1.224 38.167 2 Median NaN NaN NaN 0 0 Median 1.776 1.6032 NaN 1 0 Median 0.9663 0.93447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12328000 6052900 6274700 0 0 0 316480 140720 175760 12011000 5912100 6098900 0 0 0 0 0 0 0 0 0 10840 1367 11282 53904;53905 54057 54057 1 GFGFITFTNPEHASVAMR SEVVVVKDRETQRSRGFGFITFTNPEHASV FITFTNPEHASVAMRAMNGESLDGRQIRVD R G F M R A 2 1 1 0 0 0 1 2 1 1 0 0 1 3 1 1 2 0 0 1 0 0 18 0 1980.9516 P98179 P98179 48 65 RBM3 RNA-binding protein 3 yes yes 2;3 1.2848E-11 102.78 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 5 4 1.1645 1.1641 33.487 19 Median 0.93712 0.93569 32.735 2 0 Median 1.4575 1.2103 1.1699 2 0 Median 1.1041 1.1138 3.5639 4 0 Median 1.5375 1.2601 10.922 2 0 Median 1.1645 1.2322 11.825 5 0 Median 1.0768 0.83111 58.847 4 0 Median 359140000 166280000 192860000 4523200 2233800 2289400 4962800 1920300 3042500 274310000 127390000 146920000 1146600 459530 687110 66096000 30630000 35466000 8101300 3648600 4452700 10841 2672 11283;11284 53906;53907;53908;53909;53910;53911;53912;53913;53914;53915;53916;53917;53918;53919;53920;53921;53922;53923;53924 54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079 54065 1349 22 GFGFVCFSSPEEATK TITSAKVMMEGGRSKGFGFVCFSSPEEATK GFGFVCFSSPEEATKAVTEMNGRIVATKPL K G F T K A 1 0 0 0 1 0 2 2 0 0 0 1 0 3 1 2 1 0 0 1 0 0 15 0 1661.7396 B1ANR0;Q13310;H0Y5F5;H0YEU6;P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;Q4VXU2;H0YB86 P11940 334 348 PABPC4;PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.00059806 48.004 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.982 0.9582 34.976 5 Median 1.6121 1.6416 NaN 1 0 Median 0.982 0.87077 NaN 1 0 Median 0.90084 0.9582 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2171 1.2575 NaN 1 0 Median 0.7544 0.65939 NaN 1 0 Median 4542000 2111400 2430600 631290 239050 392240 612980 281310 331670 526720 314300 212420 0 0 0 2664500 1227800 1436700 106520 48923 57598 10842 1973;576;1151 11285 53925;53926;53927;53928;53929 54080;54081 54081 2 GFGFVDFNSEEDAK VRARIVTDRETGSSKGFGFVDFNSEEDAKA KGFGFVDFNSEEDAKAAKEAMEDGEIDGNK K G F A K A 1 0 1 2 0 0 2 2 0 0 0 1 0 3 0 1 0 0 0 1 0 0 14 0 1560.6733 P19338;H7BY16 P19338 611 624 NCL Nucleolin yes no 2 5.5273E-08 118.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 4 3 4 1 1.1827 1.073 26.484 22 Median 1.0676 1.015 46.86 5 0 Median 1.2129 1.0486 14.501 6 0 Median 1.1509 1.2323 19.34 3 0 Median 1.2451 1.0482 6.4307 3 0 Median 1.1978 1.1765 16.059 4 0 Median 1.285 1.0519 NaN 1 0 Median 241370000 108930000 132440000 86895000 39799000 47096000 29629000 14075000 15554000 71586000 31887000 39699000 3092600 1317100 1775500 49861000 21713000 28148000 310260 142360 167890 10843 2063 11286 53930;53931;53932;53933;53934;53935;53936;53937;53938;53939;53940;53941;53942;53943;53944;53945;53946;53947;53948;53949;53950;53951;53952 54082;54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106;54107 54089 26 GFGFVEFEDPR FFKGYGRIRDIDLKRGFGFVEFEDPRDADD DLKRGFGFVEFEDPRDADDAVYELDGKELC R G F P R D 0 1 0 1 0 0 2 2 0 0 0 0 0 3 1 0 0 0 0 1 0 0 11 0 1298.5932 Q13243;B4DJK0;B4DUA4;G3V5K8 Q13243 38 48 SRSF5 Serine/arginine-rich splicing factor 5 yes no 2 0.0056633 45.68 By MS/MS By MS/MS 1 2 0.93307 0.89346 10.875 3 Median NaN NaN NaN 0 0 Median 1.0367 0.89346 NaN 1 0 Median 0.85289 0.93963 14.818 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4563200 2689800 1873400 0 0 0 1020700 478750 541920 3542500 2211000 1331500 0 0 0 0 0 0 0 0 0 10844 2800 11287 53953;53954;53955 54108;54109;54110 54108 3 GFGFVLFK VDCTLKLDPITGRSRGFGFVLFKESESVDK PITGRSRGFGFVLFKESESVDKVMDQKEHK R G F F K E 0 0 0 0 0 0 0 2 0 0 1 1 0 3 0 0 0 0 0 1 0 0 8 0 913.50617 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RBQ9;A0A087WUK2;O14979 Q14103 139 146 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like no no 1;2 0.00081814 117.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 6 5 8 3 8 5 1.1651 1.1038 14.71 35 Median 1.2326 1.1827 14.473 6 0 Median 1.289 1.0978 26.705 5 0 Median 1.151 1.1142 7.7496 8 0 Median 1.5015 1.2849 5.5093 3 0 Plateau 1.1016 1.0987 8.3188 8 0 Median 1.3671 1.0964 5.7728 5 0 Linear 822520000 368320000 454200000 78953000 34723000 44230000 80800000 33601000 47200000 247880000 113860000 134020000 31158000 12717000 18440000 270560000 125220000 145350000 113160000 48200000 64959000 10845 2854;32;816 11288 53956;53957;53958;53959;53960;53961;53962;53963;53964;53965;53966;53967;53968;53969;53970;53971;53972;53973;53974;53975;53976;53977;53978;53979;53980;53981;53982;53983;53984;53985;53986;53987;53988;53989;53990 54111;54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138;54139;54140 54114 27 GFGFVQFK VLEVNIPRKPDGKMRGFGFVQFKNLLEAGK KPDGKMRGFGFVQFKNLLEAGKALKGMNMK R G F F K N 0 0 0 0 0 1 0 2 0 0 0 1 0 3 0 0 0 0 0 1 0 0 8 0 928.48069 Q9NW13;C9JE21 Q9NW13 155 162 RBM28 RNA-binding protein 28 yes no 2 0.011348 57.102 By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 5 3 1.2711 1.1927 13.908 13 Median 0.92882 0.94056 NaN 1 0 Median 1.5325 1.3857 NaN 1 0 Median 0.99464 1.0335 NaN 1 0 Median 1.495 1.2726 17.351 2 0 Median 1.2612 1.2958 11.642 5 0 Median 1.4083 1.1216 8.7314 3 0 Plateau 17989000 8401300 9587200 433240 225030 208210 391790 149140 242650 1087600 633140 454490 127960 42813 85151 14920000 6861000 8059500 1027500 490220 537260 10846 4145 11289 53991;53992;53993;53994;53995;53996;53997;53998;53999;54000;54001;54002;54003 54141;54142;54143 54143 3 GFGFVSFER ALSVKVMTDESGKSKGFGFVSFERHEDAQK ESGKSKGFGFVSFERHEDAQKAVDEMNGKE K G F E R H 0 1 0 0 0 0 1 2 0 0 0 0 0 3 0 1 0 0 0 1 0 0 9 0 1044.5029 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YAP2 P11940 232 240 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 0.00034134 136.16 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 3 3 1.3749 1.3845 20.673 13 Median 1.1042 1.0455 4.4641 2 0 Median 1.6053 1.3845 NaN 1 0 Median 1.4251 1.4758 7.722 2 0 Median 1.5046 1.2646 33.143 2 0 Median 1.6577 1.7052 5.9074 3 0 Plateau 1.2926 1.0705 3.7143 3 0 Median 69123000 29308000 39815000 36617000 17188000 19429000 2119300 597020 1522300 14857000 5648500 9208400 1661800 708890 952890 10440000 3627100 6812900 3427600 1537800 1889900 10847 1973 11290 54004;54005;54006;54007;54008;54009;54010;54011;54012;54013;54014;54015;54016 54144;54145;54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156 54145 13 GFGFVSYEK TLSVKVMRDPNGKSKGFGFVSYEKHEDANK PNGKSKGFGFVSYEKHEDANKAVEEMNGKE K G F E K H 0 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 0 0 1 1 0 0 9 0 1032.4916 B1ANR0;Q13310;H0YCC8;H0Y5F5 B1ANR0 232 240 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.0027536 69.825 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1.1613 1.0018 66.908 7 Median 1.0559 0.96251 NaN 1 0 Median 1.0744 0.93267 10.118 2 0 Median 1.3694 1.425 NaN 1 0 Median 0.22978 0.20361 NaN 1 0 Median 1.435 1.4782 NaN 1 0 Median 1.2089 1.0107 NaN 1 0 Median 28441000 13530000 14910000 9720800 5049600 4671100 9838600 4730600 5108000 6295800 2521400 3774500 296620 249020 47593 1936900 804910 1132000 351970 174740 177230 10848 576;1151 11291 54017;54018;54019;54020;54021;54022;54023 54157;54158;54159;54160 54158 4 GFGFVSYEKHEDANK TLSVKVMRDPNGKSKGFGFVSYEKHEDANK GFGFVSYEKHEDANKAVEEMNGKEISGKII K G F N K A 1 0 1 1 0 0 2 2 1 0 0 2 0 2 0 1 0 0 1 1 0 0 15 1 1726.7951 B1ANR0;Q13310;H0YCC8;H0Y5F5 B1ANR0 232 246 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 3 9.5703E-05 68.044 By MS/MS By matching By matching By matching 2 1 1 1 1.3079 1.2205 25.344 5 Median 1.016 1.0023 27.851 2 0 Median 1.5528 1.4599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4157 1.5863 NaN 1 0 Median 1.3079 1.1816 NaN 1 0 Median 31068000 13722000 17346000 23554000 10970000 12584000 1249400 475070 774310 0 0 0 0 0 0 4727000 1688400 3038600 1538000 588390 949580 10849 576;1151 11292 54024;54025;54026;54027;54028 54161;54162 54162 2 GFGFVTFADPASVDK RECMVMRDPTTKRSRGFGFVTFADPASVDK GFGFVTFADPASVDKVLGQPHHELDSKTID R G F D K V 2 0 0 2 0 0 0 2 0 0 0 1 0 3 1 1 1 0 0 2 0 0 15 0 1556.7511 J3KTC1;B4DHE8;Q96DH6;J3QKT5 J3KTC1 59 73 MSI2 RNA-binding protein Musashi homolog 2 yes no 2 0.0074625 39.918 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.87354 0.86849 20.211 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8473 0.86849 1.0128 2 1 Median 1.0996 0.93055 7.1261 2 0 Median 0.83394 0.82285 NaN 1 0 Median 0.66533 0.54925 NaN 1 0 Median 8947300 4839900 4107400 0 0 0 0 0 0 5399700 2862700 2537100 370450 172850 197600 1184900 620930 564020 1992200 1183500 808740 10850 590 11293 54029;54030;54031;54032;54033;54034 54163;54164;54165;54166 54164 4 GFGFVTFDDHDPVDK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK GFGFVTFDDHDPVDKIVLQKYHTINGHNAE R G F D K I 0 0 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 15 0 1694.7577 P22626;A0A087WUI2 P22626 154 168 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 4.5279E-06 87.363 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 5 8 5 13 13 0.95514 0.89207 10.864 45 Median 1.2238 1.1491 NaN 1 0 Median 1.0776 0.9184 7.4309 5 0 Median 0.85993 0.85365 4.2798 8 2 Median 1.1591 0.9851 3.593 5 0 Median 0.89102 0.8897 14.953 13 0 Median 1.0911 0.89992 7.5376 13 0 Median 1311400000 680130000 631310000 2957600 1338900 1618700 15769000 7038800 8730100 1112000000 581950000 530070000 20853000 9307600 11545000 132920000 68044000 64875000 26913000 12449000 14463000 10851 2103 11294 54035;54036;54037;54038;54039;54040;54041;54042;54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056;54057;54058;54059;54060;54061;54062;54063;54064;54065;54066;54067;54068;54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079 54167;54168;54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198;54199;54200;54201 54174 35 GFGFVTFDDHDPVDKIVLQK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK TFDDHDPVDKIVLQKYHTINGHNAEVRKAL R G F Q K Y 0 0 0 4 0 1 0 2 1 1 1 2 0 3 1 0 1 0 0 3 0 0 20 1 2276.1477 P22626;A0A087WUI2 P22626 154 173 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3;4 6.6859E-10 95.401 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 6 3 9 6 0.97021 0.97208 25.13 27 Median 1.0758 1.0251 36.735 2 0 Median 0.9806 0.88296 NaN 1 0 Median 0.89256 0.96662 24.708 6 1 Median 1.1434 1.0182 5.9398 3 0 Median 0.9013 0.97208 4.8485 9 0 Median 1.1324 0.98539 43.887 6 0 Median 428360000 213040000 215320000 3074100 1059000 2015100 356750 213630 143110 81082000 41901000 39181000 7339700 3309800 4029900 313820000 156090000 157730000 22694000 10464000 12230000 10852 2103 11295 54080;54081;54082;54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106 54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217;54218;54219;54220;54221;54222;54223;54224;54225;54226 54218 25 GFGFVTFENSADADR KILDVEIIFNERGSKGFGFVTFENSADADR GFGFVTFENSADADRAREKLHGTVVEGRKI K G F D R A 2 1 1 2 0 0 1 2 0 0 0 0 0 3 0 1 1 0 0 1 0 0 15 0 1631.7216 Q9NWB1;A0A087X2B1;A0A0G2JRA5;B0QYV1;F8VZY7;F8VR27;S4R469;J3KNW3;B7Z1U7;I3L1D4;A0A286YEU2;F8VZG9;O43251;B0QYY4;B0QYY7;A0A0G2JSB3;S4R3K7;A0A0G2JRD1 Q9NWB1 157 171 RBFOX1;RBFOX2 RNA binding protein fox-1 homolog 1;RNA binding protein fox-1 homolog;RNA binding protein fox-1 homolog 2 yes no 2 6.5001E-07 89.548 By MS/MS By matching By matching By matching 3 1 1 2 0.79657 0.70799 29.42 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45575 0.49589 41.673 3 2 Median 0.80716 0.70799 NaN 1 0 Median 0.76304 0.76571 NaN 1 0 Median 0.87591 0.77336 13.648 2 0 Median 30673000 17593000 13081000 0 0 0 0 0 0 24952000 14427000 10525000 249280 146440 102840 5256000 2907900 2348100 216430 111300 105140 10853 133 11296 54107;54108;54109;54110;54111;54112;54113 54227;54228;54229;54230 54227 4 GFGFVTFMDQAGVDK KECLVMRDPLTKRSRGFGFVTFMDQAGVDK GFGFVTFMDQAGVDKVLAQSRHELDSKTID R G F D K V 1 0 0 2 0 1 0 3 0 0 0 1 1 3 0 0 1 0 0 2 0 0 15 0 1617.7497 O43347 O43347 62 76 MSI1 RNA-binding protein Musashi homolog 1 yes yes 2 0.007319 33.229 By matching By matching By MS/MS 1 1 1 1.1035 1.2139 13.35 3 Median 1.2478 1.2232 NaN 1 0 Median 1.1035 0.96704 NaN 1 0 Median 1.0935 1.2139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962800 1340400 1622400 484980 149830 335150 316070 150510 165570 2161700 1040100 1121700 0 0 0 0 0 0 0 0 0 10854 1567 11297 54114;54115;54116 54231 54231 1 GFGFVTFSSMAEVDAAMAARPHSIDGR TDCVVMRDPASKRSRGFGFVTFSSMAEVDA VDAAMAARPHSIDGRVVEPKRAVAREESGK R G F G R V 5 2 0 2 0 0 1 3 1 1 0 0 2 3 1 3 1 0 0 2 0 0 27 1 2826.3218 P22626;A0A087WUI2 P22626 63 89 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 4 3.9012E-05 30.249 By MS/MS By matching 3 2 0.90155 0.95305 14.199 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84804 0.95305 6.6361 3 0 Median 1.066 0.91982 26.405 2 0 Median 12737000 6168700 6568600 0 0 0 0 0 0 0 0 0 0 0 0 10380000 5159000 5220600 2357700 1009800 1347900 10855 2103 11298 54117;54118;54119;54120;54121 54232 54232 1 GFGFVTYATVEEVDAAMNAR TDCVVMRDPNTKRSRGFGFVTYATVEEVDA TYATVEEVDAAMNARPHKVDGRVVEPKRAV R G F A R P 4 1 1 1 0 0 2 2 0 0 0 0 1 2 0 0 2 0 1 3 0 0 20 0 2146.9994 P09651;F8W6I7;F8VZ49;F8W646;F8VYN5;A0A2R8Y4L2 P09651 56 75 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 2;3 1.7288E-13 100.55 By matching By MS/MS By matching By MS/MS By MS/MS 5 16 1 7 11 1.0386 1.0182 16.01 39 Median NaN NaN NaN 0 0 Median 1.2584 1.0865 5.4859 5 0 Median 0.98524 0.95871 19.022 16 0 Median 1.2195 1.0356 NaN 1 0 Median 1.0253 1.0858 4.1867 6 1 Median 1.1894 0.96777 17.945 11 0 Median 124240000 58877000 65359000 0 0 0 3077600 1225900 1851600 96456000 46476000 49981000 120840 60813 60025 9168300 4354400 4813800 15413000 6760600 8652600 10856 1919;365 11299;11300 54122;54123;54124;54125;54126;54127;54128;54129;54130;54131;54132;54133;54134;54135;54136;54137;54138;54139;54140;54141;54142;54143;54144;54145;54146;54147;54148;54149;54150;54151;54152;54153;54154;54155;54156;54157;54158;54159;54160;54161 54233;54234;54235;54236;54237;54238;54239;54240;54241;54242;54243;54244;54245;54246;54247;54248;54249;54250;54251 54248 169 19 GFGFVTYATVEEVDAAMNARPHK TDCVVMRDPNTKRSRGFGFVTYATVEEVDA TVEEVDAAMNARPHKVDGRVVEPKRAVSRE R G F H K V 4 1 1 1 0 0 2 2 1 0 0 1 1 2 1 0 2 0 1 3 0 0 23 1 2509.206 P09651;F8W6I7;F8VZ49;F8W646;F8VYN5;A0A2R8Y4L2 P09651 56 78 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 2;3;4 3.1666E-26 107.33 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 5 7 4 8 8 0.90216 0.89617 103.15 33 Median 1.4292 1.5278 NaN 1 0 Median 0.99561 0.89884 17.81 5 0 Median 0.86721 0.95401 162.17 7 0 Median 1.0302 0.89831 0.96532 4 0 Median 0.82934 0.875 143.35 8 1 Median 0.98464 0.8226 47.647 8 0 Median 380240000 221390000 158860000 954660 330810 623850 6609800 3313100 3296700 131010000 78575000 52436000 25252000 12129000 13123000 192750000 115560000 77187000 23663000 11474000 12189000 10857 1919;365 11301;11302 54162;54163;54164;54165;54166;54167;54168;54169;54170;54171;54172;54173;54174;54175;54176;54177;54178;54179;54180;54181;54182;54183;54184;54185;54186;54187;54188;54189;54190;54191;54192;54193;54194 54252;54253;54254;54255;54256;54257;54258;54259;54260;54261;54262;54263;54264;54265;54266;54267;54268;54269;54270 54269 169 19 GFGFVYFQNHDAADK EKAEIIADKQSGKKRGFGFVYFQNHDAADK GFGFVYFQNHDAADKAAVVKFHPIQGHRVE R G F D K A 2 0 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 15 0 1714.774 Q13151 Q13151 140 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 2.2517E-06 92.866 By matching By matching By MS/MS By matching By MS/MS By matching 2 5 3 3 7 3 1.2394 1.068 28.328 23 Median 1.395 1.3215 33.959 2 0 Median 1.5035 1.2741 23.758 5 0 Median 0.99213 0.95954 4.2226 3 0 Plateau 1.3991 1.176 2.476 3 0 Median 0.94391 0.96736 15.354 7 2 Median 1.4175 1.202 51.974 3 0 Median 362740000 174970000 187780000 8043000 3559700 4483300 12318000 5412100 6905700 247350000 118960000 128400000 9773100 3994900 5778200 84342000 42718000 41624000 913830 325170 588660 10858 2790 11303 54195;54196;54197;54198;54199;54200;54201;54202;54203;54204;54205;54206;54207;54208;54209;54210;54211;54212;54213;54214;54215;54216;54217 54271;54272;54273;54274;54275;54276;54277;54278;54279;54280;54281;54282;54283 54275 13 GFGFVYFQNHDAADKAAVVK EKAEIIADKQSGKKRGFGFVYFQNHDAADK YFQNHDAADKAAVVKFHPIQGHRVEVKKAV R G F V K F 4 0 1 2 0 1 0 2 1 0 0 2 0 3 0 0 0 0 1 3 0 0 20 1 2183.08 Q13151 Q13151 140 159 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 4 0.015957 18.058 By MS/MS 2 0.84809 0.89586 18.425 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84809 0.89586 18.425 2 0 Median NaN NaN NaN 0 0 Median 16062000 7510800 8551200 0 0 0 0 0 0 0 0 0 0 0 0 16062000 7510800 8551200 0 0 0 10859 2790 11304 54218;54219 54284;54285 54285 2 GFGGIGGILR EIVTDKSQEGSQFVKGFGGIGGILRYRVDF SQFVKGFGGIGGILRYRVDFQGMEYQGGDD K G F L R Y 0 1 0 0 0 0 0 5 0 2 1 0 0 1 0 0 0 0 0 0 0 0 10 0 945.5396 B7Z7P8;P62495 B7Z7P8 391 400 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.00051704 117.93 By MS/MS By matching By MS/MS By matching By matching By matching 4 3 2 1 2 2 1.3952 1.2978 18.174 14 Median 1.2835 1.2465 11.52 4 0 Median 1.5557 1.2997 23.634 3 0 Median 1.1476 1.1152 8.9886 2 0 Median 1.4207 1.1934 NaN 1 0 Median 1.6473 1.6368 27.766 2 0 Median 1.572 1.3402 1.9537 2 0 Median 41822000 17988000 23834000 12927000 5796000 7131200 5337300 2087700 3249700 19315000 8514000 10801000 57568 25277 32291 3870300 1469700 2400700 314730 95397 219330 10860 638 11305 54220;54221;54222;54223;54224;54225;54226;54227;54228;54229;54230;54231;54232;54233 54286;54287;54288;54289 54289 4 GFGGITHGPPEK TGAVKEKITAFVVERGFGGITHGPPEKKMG VERGFGGITHGPPEKKMGIKASNTAEVFFD R G F E K K 0 0 0 0 0 0 1 4 1 1 0 1 0 1 2 0 1 0 0 0 0 0 12 0 1195.5986 P49748 P49748 287 298 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.0045381 43.308 By MS/MS 1 1.1221 0.95091 NaN 1 Median NaN NaN NaN 0 0 Median 1.1221 0.95091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5363400 2440200 2923200 0 0 0 5363400 2440200 2923200 0 0 0 0 0 0 0 0 0 0 0 0 10861 2394 11306 54234 54290 54290 1 GFGGITHGPPEKK TGAVKEKITAFVVERGFGGITHGPPEKKMG ERGFGGITHGPPEKKMGIKASNTAEVFFDG R G F K K M 0 0 0 0 0 0 1 4 1 1 0 2 0 1 2 0 1 0 0 0 0 0 13 1 1323.6935 P49748 P49748 287 299 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 3 0.010274 25.718 By MS/MS 1 0.57508 0.54615 NaN 1 Median 0.57508 0.54615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2660700 1819300 841400 2660700 1819300 841400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10862 2394 11307 54235 54291;54292 54292 2 GFGHGAGLLAHQR RAPAPKPYVCLECGKGFGHGAGLLAHQRAQ GKGFGHGAGLLAHQRAQHGDGLGAAGGEEP K G F Q R A 2 1 0 0 0 1 0 4 2 0 2 0 0 1 0 0 0 0 0 0 0 0 13 0 1319.6847 Q6DD87 Q6DD87 288 300 ZNF787 Zinc finger protein 787 yes yes 3 1.9371E-07 103.91 By MS/MS By MS/MS 1 1 1.1374 1.056 14.951 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1736 1.1737 NaN 1 0 Median 1.1023 0.95005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15285000 7106700 8177900 0 0 0 0 0 0 6011200 2658500 3352700 9273400 4448100 4825200 0 0 0 0 0 0 10863 3131 11308 54236;54237 54293;54294 54294 2 GFGHIGIAVPDVYSACK DDETQSYHNGNSDPRGFGHIGIAVPDVYSA GHIGIAVPDVYSACKRFEELGVKFVKKPDD R G F C K R 2 0 0 1 1 0 0 3 1 2 0 1 0 1 1 1 0 0 1 2 0 0 17 0 1789.8821 Q04760 Q04760 124 140 GLO1 Lactoylglutathione lyase yes yes 3 0.0011657 45.723 By MS/MS 1 0.20745 0.19186 NaN 1 Median 0.20745 0.19186 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34419000 27144000 7274900 34419000 27144000 7274900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10864 2712 11309 54238 54295 54295 1 GFGLLGSIFGK PWVKCSAALASRWGRGFGLLGSIFGKDGVL RWGRGFGLLGSIFGKDGVLNQPNSVFGLIF R G F G K D 0 0 0 0 0 0 0 4 0 1 2 1 0 2 0 1 0 0 0 0 0 0 11 0 1094.6124 A0A3B3ISV4;Q8N0U8 A0A3B3ISV4 116 126 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes no 2 0.003026 50.607 By MS/MS By matching By matching 5 1 2 1.1522 1.1792 8.9418 8 Median 1.0752 1.0676 9.8647 5 0 Median 1.3485 1.1818 NaN 1 0 Median 1.16 1.2135 4.3684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7755100 3692000 4063200 5709100 2811300 2897800 1797400 764090 1033300 248580 116540 132040 0 0 0 0 0 0 0 0 0 10865 428 11310 54239;54240;54241;54242;54243;54244;54245;54246 54296;54297;54298 54297 3 GFGSDKEAILDIITSR FDPNQDAEALYTAMKGFGSDKEAILDIITS FGSDKEAILDIITSRSNRQRQEVCQSYKSL K G F S R S 1 1 0 2 0 0 1 2 0 3 1 1 0 1 0 2 1 0 0 0 0 0 16 1 1720.8996 E5RK69;E5RFF0;E5RIU8;E5RJR0;P08133;E7EMC6;E5RK63;E5RI05;E5RJF5 P08133 35 50 ANXA6 Annexin;Annexin A6 no no 2;3 0.0015709 45.077 By MS/MS By MS/MS By MS/MS 4 3 1 1.1137 1.0692 18.297 8 Median 0.99822 1.0496 9.0387 4 0 Median 1.3685 1.2497 23.622 3 0 Median 0.9433 1.0031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40913000 18569000 22345000 29871000 13914000 15957000 9450000 3930200 5519800 1592500 724810 867650 0 0 0 0 0 0 0 0 0 10866 1898;854 11311 54247;54248;54249;54250;54251;54252;54253;54254 54299;54300;54301;54302;54303;54304;54305;54306;54307 54301 9 GFGSEEGSR SIHKLKEKAKKRKGRGFGSEEGSRARMRED KKRKGRGFGSEEGSRARMREDYDSVEQDGD R G F S R A 0 1 0 0 0 0 2 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 9 0 924.39372 Q9Y5S9 Q9Y5S9 39 47 RBM8A RNA-binding protein 8A yes yes 2 0.014601 44.349 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1.2334 1.0663 6.8903 8 Median 1.2421 1.164 NaN 1 0 Median 1.4435 1.2087 NaN 1 0 Median 1.1492 1.0734 NaN 1 0 Median 1.2247 1.0059 NaN 1 0 Median 1.07 1.0838 7.3721 2 0 Median 1.2967 1.0356 3.1939 2 0 Median 4540400 1990600 2549700 380120 181810 198310 532740 210910 321830 933830 420780 513050 430450 172720 257730 1414700 649740 764990 848490 354660 493830 10867 4469 11312 54255;54256;54257;54258;54259;54260;54261;54262 54308;54309;54310;54311;54312;54313 54312 6 GFGTDEQAIIDCLGSR FDPLRDAEVLRKAMKGFGTDEQAIIDCLGS FGTDEQAIIDCLGSRSNKQRQQILLSFKTA K G F S R S 1 1 0 2 1 1 1 3 0 2 1 0 0 1 0 1 1 0 0 0 0 0 16 0 1737.7992 P50995 P50995 215 230 ANXA11 Annexin A11 yes yes 2 0.054155 21.631 By MS/MS 1 4.3922 4.415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.3922 4.415 NaN 1 0 Median NaN NaN NaN 0 0 Median 653310 184940 468370 0 0 0 0 0 0 0 0 0 0 0 0 653310 184940 468370 0 0 0 10868 2425 11313 54263 54314 54314 1 GFGTDEQAIVDVVANR FDAIRDAEILRKAMKGFGTDEQAIVDVVAN FGTDEQAIVDVVANRSNDQRQKIKAAFKTS K G F N R S 2 1 1 2 0 1 1 2 0 1 0 0 0 1 0 0 1 0 0 3 0 0 16 0 1689.8322 P20073 P20073 200 215 ANXA7 Annexin A7 yes yes 2 1.5886E-06 89.548 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1603 1.0052 24.879 5 Median 0.97528 0.97073 NaN 1 0 Median 1.5431 1.3242 38.98 2 0 Median 1.1603 1.1645 NaN 1 0 Median 1.1184 0.9749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12111000 5461600 6649200 3649600 1773900 1875600 3127800 1366500 1761300 4259200 1843500 2415600 1074200 477700 596540 0 0 0 0 0 0 10869 2073 11314 54264;54265;54266;54267;54268 54315;54316;54317;54318;54319;54320;54321 54318 7 GFGYGQGAGALVHAQ EIYCKGCYAKNFGPKGFGYGQGAGALVHAQ GFGYGQGAGALVHAQ_______________ K G F A Q - 3 0 0 0 0 2 0 5 1 0 1 0 0 1 0 0 0 0 1 1 0 0 15 0 1431.6895 Q16527;F8VW96 Q16527 179 193 CSRP2 Cysteine and glycine-rich protein 2 yes no 2 0.00012137 68.893 By MS/MS By MS/MS By MS/MS 2 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88267000 0 0 0 0 0 3687300 0 0 83652000 0 0 927740 0 0 0 0 0 0 0 0 10870 2984 11315 54269;54270;54271;54272 54322;54323;54324;54325 54322 4 GFGYKGSCFHR PKTAENFRALSTGEKGFGYKGSCFHRIIPG TGEKGFGYKGSCFHRIIPGFMCQGGDFTRH K G F H R I 0 1 0 0 1 0 0 3 1 0 0 1 0 2 0 1 0 0 1 0 0 0 11 1 1314.5928 P62937;F8WE65;C9J5S7 P62937 45 55 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 3 0.00077508 53.567 By MS/MS 1 1.2982 1.1454 NaN 1 Median NaN NaN NaN 0 0 Median 1.2982 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2328600 907110 1421500 0 0 0 2328600 907110 1421500 0 0 0 0 0 0 0 0 0 0 0 0 10871 2611 11316 54273 54326 54326 1 GFHQVPFAPIVFIER SLDIQVPNFPADETKGFHQVPFAPIVFIER GFHQVPFAPIVFIERTDFKEEPEPGFKRLA K G F E R T 1 1 0 0 0 1 1 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 15 0 1755.9461 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 P47897 602 616 QARS Glutamine--tRNA ligase yes no 2;3 0.00037036 50.284 By MS/MS By matching By matching By matching 2 1 1 2 0.82002 0.78548 7.2702 6 Median 0.82002 0.77832 3.0541 2 0 Median 0.94914 0.82158 NaN 1 0 Median 0.69711 0.77578 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77068 0.80899 14.935 2 0 Median NaN NaN NaN 0 0 Median 26498000 14312000 12186000 13854000 7385000 6469400 5032800 2479300 2553500 6211500 3657600 2553800 0 0 0 1399000 789810 609190 0 0 0 10872 2356 11317 54274;54275;54276;54277;54278;54279 54327;54328;54329 54327 3 GFHSGEDSGLITTAAAR IQGSKLRLPGYLSGKGFHSGEDSGLITTAA HSGEDSGLITTAAARVRTQFADSKKTPSRP K G F A R V 3 1 0 1 0 0 1 3 1 1 1 0 0 1 0 2 2 0 0 0 0 0 17 0 1688.8118 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073;A0A494C1U5;H0YC65 E9PHM6 5388 5404 DST Dystonin yes no 3 6.1116E-06 69.431 By MS/MS By matching 1 1 1.3598 1.2764 14.396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0901 1.1529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6963 1.4132 NaN 1 0 Median 8680300 3623100 5057100 0 0 0 0 0 0 8160200 3432700 4727500 0 0 0 0 0 0 520070 190420 329640 10873 934 11318 54280;54281 54330;54331 54330 2 GFIAGIDLK NPLYKERHQVQLLGRGFIAGIDLKQQKREQ VQLLGRGFIAGIDLKQQKREQSRFYGDLME R G F L K Q 1 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 9 0 932.53312 Q9BUQ8 Q9BUQ8 302 310 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0068944 53.166 By matching By MS/MS By matching By matching By matching 1 2 2 1 1 1.1952 1.0442 14.061 7 Median NaN NaN NaN 0 0 Median 1.1952 1.0442 NaN 1 0 Median 0.87819 0.94935 12.413 2 0 Median 1.3782 1.1764 2.7672 2 0 Median 1.2818 1.3159 NaN 1 0 Median 1.1088 0.95672 NaN 1 0 Median 21797000 10727000 11070000 0 0 0 6524100 3165700 3358400 10971000 5731200 5239700 2954400 1227400 1727000 1267500 566910 700580 79660 35447 44213 10874 3842 11319 54282;54283;54284;54285;54286;54287;54288 54332;54333 54332 2 GFIGPGIDVPAPDMSTGER LEKITRRFTMELAKKGFIGPGIDVPAPDMS PGIDVPAPDMSTGEREMSWIADTYASTIGH K G F E R E 1 1 0 2 0 0 1 4 0 2 0 0 1 1 3 1 1 0 0 1 0 0 19 0 1914.9146 P00367 P00367 213 231 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2 3.9676E-06 51.218 By MS/MS By matching 1 1 1.1047 1.0368 23.915 2 Median 1.2307 1.2278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99162 0.87547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305400 1407700 1897700 3176600 1343400 1833200 0 0 0 0 0 0 128740 64234 64507 0 0 0 0 0 0 10875 1814 11320 54289;54290 54334 54334 1 GFIMAEVMK KAPQAAGKIHTDFEKGFIMAEVMKYEDFKE HTDFEKGFIMAEVMKYEDFKEEGSENAVKA K G F M K Y 1 0 0 0 0 0 1 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 9 0 1024.5086 J3KQ32;Q9NTK5 J3KQ32 361 369 OLA1 Obg-like ATPase 1 yes no 2 0.006571 63.48 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.0971 1.0984 19.807 7 Median 1.0799 1.0081 24.984 3 0 Median 1.0971 0.93987 NaN 1 0 Median 1.1167 1.1763 1.4213 2 1 Median 1.3465 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19791000 9334400 10457000 10948000 5475100 5473000 4579400 2109400 2470000 4032500 1682500 2350000 231480 67348 164130 0 0 0 0 0 0 10876 1315 11321 54291;54292;54293;54294;54295;54296;54297 54335;54336;54337;54338;54339;54340 54335 6 GFINMPSVAK EVESTFLARLNFIWKGFINMPSVAKFVTKA NFIWKGFINMPSVAKFVTKAYPVSGSPEYL K G F A K F 1 0 1 0 0 0 0 1 0 1 0 1 1 1 1 1 0 0 0 1 0 0 10 0 1062.5532 Q92576;E7ER40;E7EVH3 Q92576 1211 1220 PHF3 PHD finger protein 3 yes no 2 0.0075153 66.692 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10877 3539 11322 54298 54341 54341 1 GFINMQSVAK GDTTLFLSRLSTIWKGFINMQSVAKFVTKA STIWKGFINMQSVAKFVTKAYPVSGCFDYL K G F A K F 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 10 0 1093.559 Q9BTC0 Q9BTC0 1059 1068 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00039551 103.56 By matching By matching By MS/MS By matching 1 1 2 1 1.2773 1.4033 34.738 4 Median NaN NaN NaN 0 0 Median 1.9817 1.7335 NaN 1 0 Median 0.91189 0.99122 19.29 2 1 Median 1.5825 1.7712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29281000 15604000 13677000 1764000 1390300 373680 1242200 567020 675220 25362000 13307000 12055000 913330 339970 573360 0 0 0 0 0 0 10878 3824 11323 54299;54300;54301;54302;54303 54342;54343 54342 2 GFITIVDVQR DRYKKRFHKFDADQKGFITIVDVQRVLESI DADQKGFITIVDVQRVLESINVQMDENTLH K G F Q R V 0 1 0 1 0 1 0 1 0 2 0 0 0 1 0 0 1 0 0 2 0 0 10 0 1146.6397 P43304 P43304 641 650 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.025052 50.04 By MS/MS 1 4.3245 4.1082 NaN 1 Median 4.3245 4.1082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6695500 1312200 5383300 6695500 1312200 5383300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10879 2325 11324 54304 54344 54344 1 GFIWDLISPAENGK LVYCLLHYRGDENIKGFIWDLISPAENGKT KGFIWDLISPAENGKTKELQNHSGLSIPVP K G F G K T 1 0 1 1 0 0 1 2 0 2 1 1 0 1 1 1 0 1 0 0 0 0 14 0 1545.7827 Q9HCK8;A0A2R8Y840;H0YJG4 Q9HCK8 1502 1515 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 3 0.035949 26.359 By MS/MS 1 2.5513 2.5553 NaN 1 Median 2.5513 2.5553 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11040000 2910800 8129600 11040000 2910800 8129600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10880 4030 11325 54305 54345 54345 1 GFIYVHKPPVHIR CSYKASSGLLYPLERGFIYVHKPPVHIRFD ERGFIYVHKPPVHIRFDEISFVNFARGTTT R G F I R F 0 1 0 0 0 0 0 1 2 2 0 1 0 1 2 0 0 0 1 2 0 0 13 1 1561.8882 Q08945 Q08945 358 370 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 2.9292E-06 105.52 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 4 3 0.95658 0.97233 10.31 11 Median 0.94088 0.96517 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0503 1.1157 NaN 1 0 Median 0.98455 0.92228 7.4743 2 0 Median 0.93045 0.99336 7.04 4 0 Median 0.96084 0.82952 6.94 3 0 Median 145000000 73115000 71887000 5556900 2670000 2886900 0 0 0 2615300 1077000 1538200 13017000 6582900 6434400 107360000 54576000 52783000 16453000 8208600 8244700 10881 2743 11326 54306;54307;54308;54309;54310;54311;54312;54313;54314;54315;54316 54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357 54348 12 GFKDQIYDIFQK IKMFVLDEADEMLSRGFKDQIYDIFQKLNS LSRGFKDQIYDIFQKLNSNTQVVLLSATMP R G F Q K L 0 0 0 2 0 2 0 1 0 2 0 2 0 2 0 0 0 0 1 0 0 0 12 1 1500.7613 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3KTN0;J3QR64 P60842 191 202 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 7.965E-06 167.12 By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 7 3 2 2 1.279 1.1938 15.965 25 Median 1.2182 1.1938 10.752 11 3 Median 1.0853 0.98755 23.063 7 0 Median 1.3234 1.3727 6.4283 3 0 Median 1.2307 1.1689 15.962 2 0 Median NaN NaN NaN 0 0 Median 1.2699 1.093 6.3861 2 0 Median 479500000 217660000 261840000 168660000 76767000 91888000 202250000 99509000 102740000 89136000 31781000 57355000 17239000 8605900 8632700 0 0 0 2222600 998040 1224500 10882 2529 11327 54317;54318;54319;54320;54321;54322;54323;54324;54325;54326;54327;54328;54329;54330;54331;54332;54333;54334;54335;54336;54337;54338;54339;54340;54341 54358;54359;54360;54361;54362;54363;54364;54365;54366;54367;54368;54369;54370;54371;54372 54367 15 GFKDQIYEIFQK IKMFVLDEADEMLSRGFKDQIYEIFQKLNT LSRGFKDQIYEIFQKLNTSIQVVLLSATMP R G F Q K L 0 0 0 1 0 2 1 1 0 2 0 2 0 2 0 0 0 0 1 0 0 0 12 1 1514.7769 Q14240;E7EQG2 Q14240 192 203 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 2 0.0071992 51.949 By MS/MS By matching 2 1 0.91273 0.88173 6.6651 3 Median 0.97037 0.92046 6.0789 2 0 Median NaN NaN NaN 0 0 Median 0.80068 0.84273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12458000 6385400 6072300 9392300 4671600 4720800 0 0 0 3065400 1713800 1351600 0 0 0 0 0 0 0 0 0 10883 2867 11328 54342;54343;54344 54373 54373 1 GFKEQIYDVYR IKMLVLDEADEMLNKGFKEQIYDVYRYLPP MLNKGFKEQIYDVYRYLPPATQVVLISATL K G F Y R Y 0 1 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 0 2 1 0 0 11 1 1416.7038 P38919;I3L3H2 P38919 196 206 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 2.0368E-07 169.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 8 2 1.2695 1.2648 26.323 19 Median 1.4699 1.4888 24.704 4 0 Median NaN NaN NaN 0 0 Median 1.3445 1.3647 29.984 3 1 Median 1.3392 1.2766 31.792 3 0 Median 1.1067 1.1859 23.43 7 1 Median 1.3175 1.1898 12.12 2 0 Median 276760000 122820000 153940000 35487000 13887000 21600000 0 0 0 31820000 13793000 18028000 52508000 22713000 29794000 147120000 68238000 78879000 9831500 4193000 5638500 10884 2278 11329 54345;54346;54347;54348;54349;54350;54351;54352;54353;54354;54355;54356;54357;54358;54359;54360;54361;54362;54363;54364 54374;54375;54376;54377;54378;54379;54380;54381;54382;54383;54384;54385;54386;54387;54388;54389;54390;54391;54392;54393;54394 54391 21 GFKFDETEQALANER AEGKIIKKSSGFSGKGFKFDETEQALANER GFKFDETEQALANERKKLQKAALGLQDSDD K G F E R K 2 1 1 1 0 1 3 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 15 1 1753.8271 Q7L014;A0A0C4DG89 Q7L014 777 791 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2;3 1.4485E-45 221.55 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 0.99893 1.0948 27.591 7 Median 0.93794 0.97632 1.0186 2 0 Median 2.1939 2.0836 NaN 1 0 Median 0.98207 1.1138 2.4412 2 0 Median 1.376 1.3224 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0889 0.96282 NaN 1 0 Median 62752000 30884000 31868000 12061000 5595400 6465300 913950 267370 646580 49189000 24761000 24428000 316290 128720 187570 0 0 0 271710 131540 140170 10885 3216 11330 54365;54366;54367;54368;54369;54370;54371 54395;54396;54397;54398;54399 54399 5 GFKFDETEQALANERK AEGKIIKKSSGFSGKGFKFDETEQALANER FKFDETEQALANERKKLQKAALGLQDSDDE K G F R K K 2 1 1 1 0 1 3 1 0 0 1 2 0 2 0 0 1 0 0 0 0 0 16 2 1881.9221 Q7L014;A0A0C4DG89 Q7L014 777 792 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.0014006 34.498 By MS/MS By matching 1 1 1.1874 1.299 15.605 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0209 1.1633 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3811 1.4505 NaN 1 0 Median NaN NaN NaN 0 0 Median 10168000 4351900 5816000 0 0 0 0 0 0 8613400 3915700 4697600 0 0 0 1554600 436190 1118400 0 0 0 10886 3216 11331 54372;54373 54400;54401 54400 2 GFLAGYVVAK GVGQDGSLLSSPFLKGFLAGYVVAKLRASA SPFLKGFLAGYVVAKLRASAVLGFAVGTCT K G F A K L 2 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 0 0 1 2 0 0 10 0 1023.5753 L0R6Q1 L0R6Q1 50 59 SLC35A4 yes yes 2 0.0010254 69.198 By MS/MS By MS/MS 1 2 1.2874 1.0693 15.423 3 Median 1.094 0.99215 NaN 1 0 Median 1.4348 1.1947 15.675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22534000 10087000 12447000 19276000 8785500 10491000 3257800 1301700 1956100 0 0 0 0 0 0 0 0 0 0 0 0 10887 1404 11332 54374;54375;54376 54402;54403;54404;54405 54402 4 GFLEDLAPPER LASDAIINENYDYLKGFLEDLAPPERSSLI DYLKGFLEDLAPPERSSLIQDWETSGLVYL K G F E R S 1 1 0 1 0 0 2 1 0 0 2 0 0 1 2 0 0 0 0 0 0 0 11 0 1242.6245 P52948;H7C3P6;H0YCT1 P52948 1669 1679 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00058491 66.692 By matching By MS/MS By MS/MS 1 1 1 0.73311 0.77717 13.7 3 Median 0.65024 0.6534 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73311 0.77717 NaN 1 0 Median 1.0047 0.8563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18301000 10254000 8047800 1220300 674270 545990 0 0 0 15831000 8951300 6879900 1249800 627960 621850 0 0 0 0 0 0 10888 2462 11333 54377;54378;54379 54406;54407;54408;54409 54407 4 GFLIDGYPR DMLRDAMVAKVNTSKGFLIDGYPREVQQGE KVNTSKGFLIDGYPREVQQGEEFERRIGQP K G F P R E 0 1 0 1 0 0 0 2 0 1 1 0 0 1 1 0 0 0 1 0 0 0 9 0 1036.5342 Q5T9B7;P00568;H0YID2;Q9Y6K8 Q5T9B7 105 113 AK1;AK5 Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5 yes no 2 0.0019502 75.854 By MS/MS By MS/MS By MS/MS 1 2 1 1.0351 0.9283 8.8361 4 Median 0.99079 0.94097 NaN 1 0 Median 1.1047 0.93651 3.1638 2 0 Median 0.83536 0.7891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26511000 12612000 13899000 19087000 9067300 10020000 5144600 2340900 2803800 2279000 1203400 1075600 0 0 0 0 0 0 0 0 0 10889 1825 11334 54380;54381;54382;54383 54410;54411;54412;54413;54414;54415;54416;54417;54418;54419 54413 10 GFLNSSELSGLPAGPDR MHCQTLKDQPSAYSKGFLNSSELSGLPAGP LNSSELSGLPAGPDREGSLKDQLALAIGKL K G F D R E 1 1 1 1 0 0 1 3 0 0 3 0 0 1 2 3 0 0 0 0 0 0 17 0 1715.8479 P43897;C9JT21;C9JG32;F8VPA7;F8VS27 P43897 162 178 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 1.1907E-10 85.288 By MS/MS By MS/MS By MS/MS 1 1 1 0.65389 0.62225 19.417 3 Median 0.65389 0.61147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63935 0.62225 NaN 1 1 Median 1.0348 0.86314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31582000 18607000 12975000 10460000 6283400 4176800 0 0 0 15925000 9828100 6096900 5197200 2495900 2701300 0 0 0 0 0 0 10890 2328 11335 54384;54385;54386 54420;54421;54422;54423;54424;54425;54426;54427 54423 8 GFLSGPMGSGMR PGIGAILERSIDMDRGFLSGPMGSGMRERI MDRGFLSGPMGSGMRERIGSKGNQIFVRNL R G F M R E 0 1 0 0 0 0 0 4 0 0 1 0 2 1 1 2 0 0 0 0 0 0 12 0 1195.5478 A0A0A0MQW0;A0A0A0MR39;A0A0C4DGV1;Q9P2K5;H0YN19;A0A087WUT0;H0YKS1 A0A0A0MQW0 480 491 MYEF2 Myelin expression factor 2 yes no 2 3.3145E-05 96.331 By MS/MS 2 0.67835 0.7015 18.172 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67835 0.7015 18.172 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10920000 6378900 4540900 0 0 0 0 0 0 10920000 6378900 4540900 0 0 0 0 0 0 0 0 0 10891 149 11336 54387;54388 54428;54429;54430;54431 54430 4 GFLTSSFWR FLEKCLQHKDIPVPKGFLTSSFWRS_____ DIPVPKGFLTSSFWRS______________ K G F W R S 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 2 1 1 0 0 0 0 9 0 1099.5451 Q53GS7 Q53GS7 689 697 GLE1 Nucleoporin GLE1 yes yes 2 0.056984 29.149 By MS/MS By matching 1 1 1.165 1.2422 4.0125 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1296 1.2074 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2016 1.2779 NaN 1 0 Median NaN NaN NaN 0 0 Median 3118700 1302000 1816700 0 0 0 0 0 0 1157700 486750 670990 0 0 0 1960900 815260 1145700 0 0 0 10892 3031 11337 54389;54390 54432 54432 1 GFLWDEGFHQLVVQR VPLFTAVPSRSFFPRGFLWDEGFHQLVVQR GFLWDEGFHQLVVQRWDPSLTREALGHWLG R G F Q R W 0 1 0 1 0 2 1 2 1 0 2 0 0 2 0 0 0 1 0 2 0 0 15 0 1829.9213 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 447 461 MOGS Mannosyl-oligosaccharide glucosidase yes no 2;3 0.00010058 69.349 By MS/MS By matching By matching 2 1 1 1.1016 1.1206 14.31 4 Median 1.0765 1.0481 5.91 2 1 Median NaN NaN NaN 0 0 Median 1.3126 1.4073 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0842 1.149 NaN 1 0 Median NaN NaN NaN 0 0 Median 8466600 4062400 4404200 6264200 3075400 3188800 0 0 0 1561500 714410 847070 0 0 0 640850 272580 368270 0 0 0 10893 2835 11338 54391;54392;54393;54394 54433;54434;54435 54435 3 GFLYFNR PVDSFAPFHNVNCPRGFLYFNRQGELRISV FHNVNCPRGFLYFNRQGELRISVLPAYLSY R G F N R Q 0 1 1 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 0 0 0 7 0 915.46029 Q10570 Q10570 986 992 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0076141 88.627 By MS/MS By MS/MS 2 3 1.1841 1.0834 4.6263 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0224 1.105 2.7961 2 0 Median 1.2516 1.0552 5.9447 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19480000 9342300 10137000 0 0 0 0 0 0 18716000 8996800 9719500 763450 345490 417950 0 0 0 0 0 0 10894 2753 11339 54395;54396;54397;54398;54399 54436;54437;54438;54439;54440 54437 5 GFMVQTGDPTGTGR ASNYYNGCIFHRNIKGFMVQTGDPTGTGRG KGFMVQTGDPTGTGRGGNSIWGKKFEDEYS K G F G R G 0 1 0 1 0 1 0 4 0 0 0 0 1 1 1 0 3 0 0 1 0 0 14 0 1422.6562 H7BZ14;Q9H2H8;C9K058 H7BZ14 67 80 PPIL3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase-like 3 yes no 2 8.0342E-08 166.55 By MS/MS By MS/MS By MS/MS 1 1 1 0.898 0.87251 16.321 3 Median 0.898 0.87251 NaN 1 0 Median 1.2224 1.0143 NaN 1 0 Median 0.72254 0.73205 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17729000 9672600 8056000 10755000 5678900 5075700 3371300 1506200 1865100 3602700 2487500 1115200 0 0 0 0 0 0 0 0 0 10895 1250 11340 54400;54401;54402 54441;54442;54443 54441 3 GFNAVMIR LRELIRDEGVTSLYKGFNAVMIRAFPANAA GVTSLYKGFNAVMIRAFPANAACFLGFEVA K G F I R A 1 1 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 8 0 906.47456 O43772;C9JPE1 O43772 268 275 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes no 2 0.0036575 86.086 By MS/MS By matching 1 1 1.3846 1.249 24.239 2 Median 1.1114 1.0523 NaN 1 0 Median 1.7248 1.4825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5429500 2412000 3017500 4943800 2216900 2726900 485730 195130 290600 0 0 0 0 0 0 0 0 0 0 0 0 10896 715 11341 54403;54404 54444;54445 54444 2 GFNEGLWEIDNNPK YSENKEKYGKPNKRKGFNEGLWEIDNNPKV KGFNEGLWEIDNNPKVKFSSQQAATKQSNA K G F P K V 0 0 3 1 0 0 2 2 0 1 1 1 0 1 1 0 0 1 0 0 0 0 14 0 1631.758 O75475 O75475 76 89 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 6.525E-08 117.67 By MS/MS By MS/MS By MS/MS 5 2 2 0.95627 0.97074 17.044 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92883 0.88912 13.254 5 1 Median 1.4691 1.2784 6.0475 2 0 Median 0.95929 0.95276 2.6436 2 1 Median NaN NaN NaN 0 0 Median 69525000 36431000 33094000 0 0 0 0 0 0 59155000 31411000 27745000 3786600 1462600 2324000 6582900 3557700 3025200 0 0 0 10897 1674 11342 54405;54406;54407;54408;54409;54410;54411;54412;54413 54446;54447;54448;54449;54450;54451;54452;54453;54454;54455;54456;54457 54449 12 GFNEGLWEIENNPGVK YKEYKDKFGKSNKRKGFNEGLWEIENNPGV FNEGLWEIENNPGVKFTGYQAIQQQSSSET K G F V K F 0 0 3 0 0 0 3 3 0 1 1 1 0 1 1 0 0 1 0 1 0 0 16 0 1801.8635 Q9Y3E1;H3BPM9 Q9Y3E1 80 95 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes no 2 0.00013398 54.776 By MS/MS By matching By matching 3 2 1 1.0745 0.8872 29.481 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71884 0.68897 45.248 3 0 Median 1.1417 0.95108 10.393 2 0 Median NaN NaN NaN 0 0 Median 1.0595 0.89071 NaN 1 0 Median 16445000 9456900 6987800 0 0 0 0 0 0 14894000 8656600 6237000 740980 333900 407080 0 0 0 810200 466430 343770 10898 4426 11343 54414;54415;54416;54417;54418;54419 54458;54459;54460 54458 3 GFNKVVLK KNNWEVSALSRAAQKGFNKVVLKHLKKTKN LSRAAQKGFNKVVLKHLKKTKNLSSNEAIS K G F L K H 0 0 1 0 0 0 0 1 0 0 1 2 0 1 0 0 0 0 0 2 0 0 8 1 903.55419 P78527 P78527 825 832 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.02486 76.847 By MS/MS By MS/MS 1 1 1.1045 1.0386 5.7343 2 Median NaN NaN NaN 0 0 Median 1.2228 1.0816 NaN 1 0 Median 0.9977 0.99733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14751000 6260500 8490100 0 0 0 11181000 4628700 6552000 3569900 1631800 1938100 0 0 0 0 0 0 0 0 0 10899 2647 11344 54420;54421 54461;54462 54461 2 GFNLPYQDAR EQLRMEETPTEYLQRGFNLPYQDARKCLGR EYLQRGFNLPYQDARKCLGRFGLESHAHTI R G F A R K 1 1 1 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1179.5673 Q8NE71;H0YGW7;A0A0G2JIC2 Q8NE71 714 723 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.00070414 109.11 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 1 4 1 1.0914 0.95358 52.3 10 Median 2.3503 2.2535 110.27 2 1 Median 1.1079 0.97032 13.533 2 0 Median 0.98358 1.045 NaN 1 0 Median 1.0843 0.9161 4.6386 4 0 Median NaN NaN NaN 0 0 Median 1.114 0.91281 NaN 1 0 Median 32270000 14375000 17895000 10742000 3987400 6755100 3852500 1814900 2037600 9225500 4618900 4606600 8291300 3880100 4411200 0 0 0 158070 73762 84309 10900 3427 11345 54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432 54463;54464;54465;54466;54467;54468;54469 54465 7 GFNPAQPLNIR LIREMDYETEVEMEKGFNPAQPLNIRMNLT EMEKGFNPAQPLNIRMNLTQLYGSNTAGYI K G F I R M 1 1 2 0 0 1 0 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 11 0 1225.6568 Q12769;G3V198;E9PR16 Q12769 690 700 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.0001144 130.22 By matching By MS/MS 1 2 0.7299 0.80697 27.211 3 Plateau 0.48358 0.48628 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61526 0.66518 28.752 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33243000 19169000 14075000 4153600 2192800 1960800 0 0 0 29090000 16976000 12114000 0 0 0 0 0 0 0 0 0 10901 2756 11346 54433;54434;54435 54470;54471;54472;54473;54474 54473 5 GFNPEVEK FLLCEDLLYGRMSFRGFNPEVEKLMLQMNA YGRMSFRGFNPEVEKLMLQMNAKHKAEEVE R G F E K L 0 0 1 0 0 0 2 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 8 0 918.4447 H3BSB3;H3BNT4;Q99547 H3BSB3 50 57 MPHOSPH6 M-phase phosphoprotein 6 yes no 2 0.023904 43.808 By matching By MS/MS By matching 1 1 1 1.0631 0.93062 7.3497 3 Median NaN NaN NaN 0 0 Median 1.0631 0.93062 NaN 1 0 Median 0.92743 0.87178 NaN 1 0 Median 1.2246 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8564300 4502500 4061800 0 0 0 511560 251760 259800 7558100 4005800 3552400 494610 244990 249620 0 0 0 0 0 0 10902 1215 11347 54436;54437;54438 54475;54476 54475 2 GFNSVATAR PSIPGYGFSEASSKKGFNSVATARIFYKLM EASSKKGFNSVATARIFYKLMLRLGFQEFY K G F A R I 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 9 0 921.46683 P07099 P07099 198 206 EPHX1 Epoxide hydrolase 1 yes yes 2 0.011906 61.962 By MS/MS 1 0.9842 0.83995 NaN 1 Median NaN NaN NaN 0 0 Median 0.9842 0.83995 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1472700 817780 654880 0 0 0 1472700 817780 654880 0 0 0 0 0 0 0 0 0 0 0 0 10903 1879 11348 54439 54477 54477 1 GFPSVDSR PPLLGDHPAEYGEGRGFPSVDSRGSCAPAR AEYGEGRGFPSVDSRGSCAPARRPPCKFSP R G F S R G 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 2 0 0 0 1 0 0 8 0 863.41373 A0A3B3ITJ4 A0A3B3ITJ4 233 240 yes yes 2 0.0095084 60.682 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.90789 0.87042 8.6534 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9294 0.94718 NaN 1 0 Median 1.0178 0.85172 NaN 1 0 Median 0.79642 0.82813 10.114 2 0 Median NaN NaN NaN 0 0 Median 22611000 12157000 10455000 0 0 0 0 0 0 10628000 5572800 5055300 923480 365400 558090 9948500 5713300 4235300 1111400 505350 606080 10904 436 11349 54440;54441;54442;54443;54444 54478;54479 54478 2 GFPTIYFSPANK MDATANDVPSPYEVRGFPTIYFSPANKKLN EVRGFPTIYFSPANKKLNPKKYEGGRELSD R G F N K K 1 0 1 0 0 0 0 1 0 1 0 1 0 2 2 1 1 0 1 0 0 0 12 0 1340.6765 P30101 P30101 449 460 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.00036777 80.755 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.78759 0.74801 5.5896 6 Median 0.7783 0.73867 1.515 3 0 Median 0.90054 0.76203 NaN 1 0 Median 0.72042 0.69885 NaN 1 0 Median 0.96233 0.82817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61149000 32669000 28480000 23317000 12520000 10796000 20479000 10165000 10314000 15842000 9194100 6648200 1510700 789140 721600 0 0 0 0 0 0 10905 2189 11350 54445;54446;54447;54448;54449;54450 54480;54481;54482;54483;54484;54485;54486;54487;54488 54486 9 GFPTIYFSPANKK MDATANDVPSPYEVRGFPTIYFSPANKKLN VRGFPTIYFSPANKKLNPKKYEGGRELSDF R G F K K L 1 0 1 0 0 0 0 1 0 1 0 2 0 2 2 1 1 0 1 0 0 0 13 1 1468.7715 P30101 P30101 449 461 PDIA3 Protein disulfide-isomerase A3 yes yes 2;3 0.001822 56.359 By MS/MS By matching 3 2 1.0542 0.99364 19.062 5 Median 0.83647 0.79999 25.789 3 0 Median 1.0585 0.99725 0.51364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27606000 14173000 13434000 24913000 12933000 11979000 2693500 1239300 1454200 0 0 0 0 0 0 0 0 0 0 0 0 10906 2189 11351 54451;54452;54453;54454;54455 54489;54490;54491;54492 54492 4 GFPTWLK LREVWYFGLHYVDNKGFPTWLKLDKKVSAQ GLHYVDNKGFPTWLKLDKKVSAQEVRKENP K G F L K L 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 0 0 0 0 7 0 847.45922 P15311;E7EQR4 P15311 54 60 EZR Ezrin yes no 2 0.045318 42.474 By MS/MS By matching By MS/MS By matching By matching 1 2 1 2 1 1.0645 1.0023 15.25 7 Median 1.0645 1.0058 NaN 1 0 Median 1.0282 0.89554 4.1886 2 0 Median 1.2346 1.2456 NaN 1 0 Median 1.0936 0.94441 8.4141 2 0 Median NaN NaN NaN 0 0 Median 1.4373 1.2607 NaN 1 0 Median 25303000 11825000 13477000 4655800 2048300 2607500 5040800 2435000 2605800 13052000 6151600 6900700 2476300 1158500 1317800 0 0 0 77530 31970 45560 10907 879 11352 54456;54457;54458;54459;54460;54461;54462 54493;54494;54495;54496;54497 54495 5 GFQEVVTPNIFNSR YNALIEFIRSEYRKRGFQEVVTPNIFNSRL RGFQEVVTPNIFNSRLWMTSGHWQHYSENM R G F S R L 0 1 2 0 0 1 1 1 0 1 0 0 0 2 1 1 1 0 0 2 0 0 14 0 1606.8104 P26639 P26639 368 381 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 2.9559E-12 180.97 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 2 3 2 2 1 1.0286 0.90311 39.382 13 Median 0.88618 0.87017 18.456 3 1 Median 0.81065 0.70681 6.9565 2 0 Median 1.0192 1.0246 31.029 3 0 Median 1.1643 1.0203 17.254 2 0 Median 1.765 1.9022 59.752 2 0 Median 1.0766 0.90079 NaN 1 0 Median 120820000 58227000 62593000 47263000 23571000 23692000 2753400 1596200 1157200 52349000 25581000 26767000 11769000 5697900 6071500 6416900 1670300 4746600 268520 110790 157730 10908 2147 11353 54463;54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475 54498;54499;54500;54501;54502;54503;54504;54505;54506;54507;54508;54509 54499 12 GFQQISFVNSIATSK QVNHRWEVCLTMSEKGFQQISFVNSIATSK GFQQISFVNSIATSKGGRHVDYVADQIVTK K G F S K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 3 1 0 0 1 0 0 15 0 1625.8413 P11388 P11388 307 321 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.6464E-09 117.79 By matching By MS/MS By matching By MS/MS By MS/MS 1 4 2 6 2 1.1625 1.1618 13.072 15 Median NaN NaN NaN 0 0 Median 1.3569 1.1829 NaN 1 0 Median 1.0045 1.1118 6.4107 4 0 Median 1.6957 1.5303 6.5156 2 0 Median 1.1444 1.1751 9.2256 6 0 Median 1.3084 1.1151 8.4107 2 0 Median 118080000 56096000 61981000 0 0 0 1066600 450420 616210 48386000 23861000 24525000 2410200 838500 1571700 64732000 30313000 34419000 1482800 633440 849330 10909 1963 11354 54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490 54510;54511;54512;54513;54514;54515;54516;54517;54518;54519;54520;54521;54522;54523 54516 14 GFQQISFVNSIATTK LANERWDVCLTLSEKGFQQISFVNSIATTK GFQQISFVNSIATTKGGRHVDYVVDQVVGK K G F T K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 2 2 0 0 1 0 0 15 0 1639.857 Q02880;E9PCY5 Q02880 328 342 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 3.9928E-07 90.614 By matching By MS/MS By matching By MS/MS By matching 1 3 2 4 1 0.86425 0.93737 24.271 11 Median 1.2057 1.3439 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85058 0.93737 2.7237 3 2 Median 1.5853 1.4385 9.9251 2 0 Median 0.78436 0.81787 12.055 4 0 Median 1.2929 1.0805 NaN 1 0 Median 55915000 28842000 27074000 3614700 1272500 2342300 0 0 0 38049000 20235000 17814000 844150 355210 488940 12977000 6793400 6183100 430560 185860 244700 10910 2704 11355 54491;54492;54493;54494;54495;54496;54497;54498;54499;54500;54501 54524;54525;54526;54527;54528 54526 5 GFQVAPEHHNDHK KKDFESCLGAKQGFKGFQVAPEHHNDHKTF FKGFQVAPEHHNDHKTFIYDNTEFTLAHGS K G F H K T 1 0 1 1 0 1 1 1 3 0 0 1 0 1 1 0 0 0 0 1 0 0 13 0 1514.7015 P21399 P21399 401 413 ACO1 Cytoplasmic aconitate hydratase yes yes 3 0.059613 12.355 By matching By MS/MS 1 1 0.95565 0.9155 9.8931 2 Median 0.84008 0.85365 NaN 1 0 Median 1.0871 0.98184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 920900 456420 464480 191580 103370 88211 729320 353050 376270 0 0 0 0 0 0 0 0 0 0 0 0 10911 2090 11356 54502;54503 54529 54529 1 GFSAEQIAR KGKPKRGDTYELQVRGFSAEQIARWIADRT YELQVRGFSAEQIARWIADRTDVNIRVIRP R G F A R W 2 1 0 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 9 0 977.49304 A0A087WU53;Q9H0U3 A0A087WU53 192 200 MAGT1 Magnesium transporter protein 1 yes no 2 0.00022533 140.98 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1.0641 0.96821 29.007 6 Median 0.85958 0.85535 18.069 2 0 Median 1.2065 0.96451 NaN 1 0 Median 1.394 1.4027 31.374 2 0 Median 1.062 0.87772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71805000 31939000 39866000 12619000 5883600 6735800 32267000 14139000 18128000 25723000 11287000 14435000 1195600 629280 566300 0 0 0 0 0 0 10912 24 11357 54504;54505;54506;54507;54508;54509;54510;54511 54530;54531;54532;54533;54534;54535;54536 54530 7 GFSAHLMK TPAKEMGMGNVERCRGFSAHLMKMLVRQRR GNVERCRGFSAHLMKMLVRQRRSLTTLSEQ R G F M K M 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 1 0 0 0 0 0 0 8 0 889.44801 Q9NU22 Q9NU22 4227 4234 MDN1 Midasin yes yes 2 0.054363 33.813 By MS/MS 1 1.2021 1.3151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2021 1.3151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2089000 796800 1292200 0 0 0 0 0 0 2089000 796800 1292200 0 0 0 0 0 0 0 0 0 10913 4112 11358 54512 54537;54538 54538 2 GFSEEHNTWEPEK RRVVKGQVEYLLKWKGFSEEHNTWEPEKNL WKGFSEEHNTWEPEKNLDCPELISEFMKKY K G F E K N 0 0 1 0 0 0 4 1 1 0 0 1 0 1 1 1 1 1 0 0 0 0 13 0 1588.6794 P45973;F8VNY3 P45973 43 55 CBX5 Chromobox protein homolog 5 yes no 2;3 4.8978E-05 88.681 By MS/MS 3 1.2978 1.0702 8.5642 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2978 1.0702 8.5642 3 0 Median 23506000 9486200 14019000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23506000 9486200 14019000 10914 2331 11359 54513;54514;54515 54539;54540;54541;54542 54542 4 GFSEGLWEIENNPTVK YEESKEKFGKPNKRKGFSEGLWEIENNPTV FSEGLWEIENNPTVKASGYQSSQKKSCVEE K G F V K A 0 0 2 0 0 0 3 2 0 1 1 1 0 1 1 1 1 1 0 1 0 0 16 0 1818.8788 P51858 P51858 81 96 HDGF Hepatoma-derived growth factor yes yes 2;3 7.2165E-08 97.911 By matching By MS/MS By MS/MS By matching 1 6 3 2 0.85647 0.81187 17.993 12 Median NaN NaN NaN 0 0 Median 0.94246 0.79572 NaN 1 0 Median 0.83365 0.80253 11.113 6 0 Median 0.80944 0.68443 26.594 3 0 Median NaN NaN NaN 0 0 Median 1.052 0.88659 6.0617 2 0 Median 84049000 43445000 40604000 0 0 0 1585000 898910 686110 76755000 39518000 37238000 4262200 2367300 1894900 0 0 0 1446300 661210 785100 10915 2444 11360 54516;54517;54518;54519;54520;54521;54522;54523;54524;54525;54526;54527 54543;54544;54545;54546;54547;54548;54549 54546 7 GFSFVAITSDDESQAMQTVGVHSIVQQLHR SPGIPPSANAHQLFRGFSFVAITSDDESQA MQTVGVHSIVQQLHRNSIQFTDGYEVKEDI R G F H R N 2 1 0 2 0 4 1 2 2 2 1 0 1 2 0 4 2 0 0 4 0 0 30 0 3286.6041 B1AXG1;B7ZB17;P51812 B1AXG1 355 384 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 4 2.1389E-05 31.896 By MS/MS 1 1.1624 1.0072 NaN 1 Median NaN NaN NaN 0 0 Median 1.1624 1.0072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4109100 1582300 2526800 0 0 0 4109100 1582300 2526800 0 0 0 0 0 0 0 0 0 0 0 0 10916 581 11361 54528 54550 54550 1 GFSIGIGDVTPGQGLLK MSRLARLAPVYLSNRGFSIGIGDVTPGQGL SIGIGDVTPGQGLLKAKYELLNAGYKKCDE R G F L K A 0 0 0 1 0 1 0 5 0 2 2 1 0 1 1 1 1 0 0 1 0 0 17 0 1657.9039 O14802 O14802 695 711 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 2 0.0050743 30.331 By MS/MS By matching 1 1 1.0374 0.95517 14.873 2 Median 0.913 0.85982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1787 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2014900 999200 1015700 1837600 934380 903260 0 0 0 0 0 0 177270 64829 112440 0 0 0 0 0 0 10917 1496 11362 54529;54530 54551 54551 1 GFSLEELR RCPTVRYHTKVRAGRGFSLEELRVAGIHKK TKVRAGRGFSLEELRVAGIHKKVARTIGIS R G F L R V 0 1 0 0 0 0 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 949.4869 P26373;J3QSB4 P26373 75 82 RPL13 60S ribosomal protein L13 yes no 2 1.0448E-05 162.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 2 4 5 1.1935 1.1301 7.8429 21 Median 1.1495 1.0912 7.8009 5 0 Median 1.2152 1.0283 9.6656 5 0 Median 1.1604 1.1144 NaN 1 0 Median 1.3292 1.1082 2.7707 2 0 Median 1.1733 1.2201 6.6597 4 0 Median 1.4505 1.1751 7.2303 4 0 Median 344200000 154390000 189810000 163920000 75197000 88720000 55650000 24407000 31243000 27008000 12859000 14149000 1294300 555290 739060 75105000 33169000 41936000 21229000 8202100 13027000 10918 2144 11363 54531;54532;54533;54534;54535;54536;54537;54538;54539;54540;54541;54542;54543;54544;54545;54546;54547;54548;54549;54550;54551;54552 54552;54553;54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568;54569;54570;54571;54572;54573;54574;54575 54568 24 GFSLESFR QFSIQKLEPFLRDTKGFSLESFRAKASSLS PFLRDTKGFSLESFRAKASSLSEELKHFAD K G F F R A 0 1 0 0 0 0 1 1 0 0 1 0 0 2 0 2 0 0 0 0 0 0 8 0 941.46068 Q9H410;Q5JW53;Q5JW54;Q5JW57 Q9H410 158 165 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 0.0025526 107.32 By MS/MS By matching By MS/MS 1 1 2 1.0021 1.0226 18.664 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82613 0.89845 NaN 1 0 Median 1.5524 1.3181 NaN 1 0 Median 1.0021 1.0226 16.489 2 0 Median NaN NaN NaN 0 0 Median 5455000 2822600 2632400 0 0 0 0 0 0 2336700 1282900 1053800 124930 54823 70106 2993400 1484900 1508500 0 0 0 10919 3960 11364 54553;54554;54555;54556 54576;54577;54578;54579 54577 4 GFSLLATEDK EELGFRPEYSASQLKGFSLLATEDKEALKK ASQLKGFSLLATEDKEALKKQLPGVKSEGK K G F D K E 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1079.5499 P09874 P09874 183 192 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00039551 110.87 By MS/MS By MS/MS By matching 1 2 1 1.2002 1.142 23.215 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1687 1.2787 NaN 1 0 Median 1.3138 1.142 7.4891 2 0 Median NaN NaN NaN 0 0 Median 0.91045 0.76102 NaN 1 0 Median 23031000 10540000 12492000 0 0 0 0 0 0 8653100 4066600 4586500 13986000 6281300 7704900 0 0 0 392060 191950 200110 10920 1922 11365 54557;54558;54559;54560 54580;54581;54582;54583 54582 4 GFSLLATEDKEALK EELGFRPEYSASQLKGFSLLATEDKEALKK KGFSLLATEDKEALKKQLPGVKSEGKRKGD K G F L K K 2 0 0 1 0 0 2 1 0 0 3 2 0 1 0 1 1 0 0 0 0 0 14 1 1520.8086 P09874 P09874 183 196 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.1764E-10 113.63 By MS/MS By MS/MS By matching 5 3 2 1.0063 1.1497 16.467 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98972 1.1491 12.273 5 2 Median 1.3385 1.2751 8.2626 3 0 Median NaN NaN NaN 0 0 Median 1.1517 1.0471 34.765 2 0 Median 99184000 45787000 53397000 0 0 0 0 0 0 77717000 36478000 41239000 20598000 8909200 11689000 0 0 0 868920 400200 468720 10921 1922 11366 54561;54562;54563;54564;54565;54566;54567;54568;54569;54570 54584;54585;54586;54587;54588;54589;54590;54591;54592;54593;54594 54584 11 GFSLLATEDKEALKK EELGFRPEYSASQLKGFSLLATEDKEALKK GFSLLATEDKEALKKQLPGVKSEGKRKGDE K G F K K Q 2 0 0 1 0 0 2 1 0 0 3 3 0 1 0 1 1 0 0 0 0 0 15 2 1648.9036 P09874 P09874 183 197 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 1.7471E-12 134.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 20 21 9 9 1.129 1.1873 19.548 66 Median 1.0879 1.1168 9.2491 5 0 Median 1.0762 1.0221 26.869 4 0 Median 1.0219 1.1891 16.657 20 0 Median 1.2085 1.3156 16.861 19 0 Plateau 1.1333 1.2345 15.136 9 0 Median 1.1424 1.1643 32.224 9 0 Median 2942200000 1363400000 1578800000 86237000 43625000 42613000 5961300 2583600 3377700 1815500000 871210000 944320000 833150000 357030000 476110000 127640000 56139000 71504000 73668000 32815000 40852000 10922 1922 11367 54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591;54592;54593;54594;54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638 54595;54596;54597;54598;54599;54600;54601;54602;54603;54604;54605;54606;54607;54608;54609;54610;54611;54612;54613;54614;54615;54616;54617;54618;54619;54620;54621;54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659;54660;54661;54662;54663;54664;54665;54666;54667;54668;54669;54670;54671;54672;54673;54674;54675;54676 54668 82 GFSSGSAVVSGGSR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G F S R R 1 1 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 14 0 1253.6 CON__P35908;CON__P35908v2;P35908 CON__P35908 21 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.2744E-69 206.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 9 9 11 7 8 0.038957 0.033024 133.94 23 Median 0.055252 0.05235 69.128 4 4 Median 0.042487 0.035368 169.53 5 5 Median 0.059483 0.059785 131.17 4 4 Median 0.015175 0.013007 125.3 6 6 Median 0.005352 0.0055293 105.49 2 2 Median 0.017046 0.013887 181.53 2 2 Median 1102900000 1095100000 7894000 180000000 178550000 1445600 233720000 231700000 2019100 66155000 64248000 1906900 245600000 244320000 1282400 156730000 156010000 722620 220740000 220230000 517380 + 10923 764;765 11368 54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650;54651;54652;54653;54654;54655;54656;54657;54658;54659;54660;54661;54662;54663;54664;54665;54666;54667;54668;54669;54670;54671;54672;54673;54674;54675;54676;54677;54678;54679;54680;54681;54682;54683;54684;54685;54686;54687;54688;54689;54690;54691 54677;54678;54679;54680;54681;54682;54683;54684;54685;54686;54687;54688;54689;54690;54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704;54705;54706;54707;54708;54709;54710;54711;54712;54713;54714;54715;54716;54717;54718;54719;54720;54721;54722;54723;54724;54725;54726;54727;54728;54729;54730;54731;54732;54733;54734;54735;54736;54737;54738;54739;54740;54741;54742;54743 54677 67 GFSSGSAVVSGGSRR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG R G F R R S 1 2 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 15 1 1409.7011 CON__P35908;CON__P35908v2;P35908 CON__P35908 21 35 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 8.3746E-15 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 7 2 0.092937 0.089327 125.79 12 Median NaN NaN NaN 0 0 Median 0.097139 0.089792 45.571 3 3 Median NaN NaN NaN 0 0 Median 0.051297 0.044898 56.052 4 4 Median 0.31694 0.34131 153.2 4 4 Median 0.032083 0.028159 NaN 1 1 Median 39414000 36840000 2574300 3000600 3000600 0 4962600 4465800 496760 0 0 0 6888900 6591400 297490 21223000 19543000 1680900 3338300 3239200 99155 + 10924 764;765 11369 54692;54693;54694;54695;54696;54697;54698;54699;54700;54701;54702;54703;54704;54705;54706;54707;54708;54709;54710;54711 54744;54745;54746;54747;54748;54749;54750;54751;54752;54753;54754;54755;54756;54757;54758;54759;54760;54761;54762;54763 54757 20 GFSSTFTGER KTPRIPKIYTKTGDKGFSSTFTGERRPKDD KTGDKGFSSTFTGERRPKDDQVFEAVGTTD K G F E R R 0 1 0 0 0 0 1 2 0 0 0 0 0 2 0 2 2 0 0 0 0 0 10 0 1087.4934 Q96EY8;F5H4Z7;A0A087X114;S4R3Z1 Q96EY8 66 75 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 2 4.3566E-05 138.54 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.531 1.2994 30.384 5 Median 0.98378 0.92907 NaN 1 0 Median 1.531 1.2994 NaN 1 0 Median 1.2157 1.168 NaN 1 0 Median 1.6631 1.3773 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6283 2.1304 NaN 1 0 Median 22018000 9222700 12795000 5693700 2835900 2857800 2107500 647170 1460300 11014000 4636100 6377600 2314100 829660 1484500 0 0 0 888890 273870 615020 10925 3645 11370 54712;54713;54714;54715;54716 54764;54765;54766;54767;54768 54766 5 GFSTWLK LREVWFFGLQYQDTKGFSTWLKLNKKVTAQ GLQYQDTKGFSTWLKLNKKVTAQDVRKESP K G F L K L 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 1 0 0 0 0 7 0 837.43849 P26038;V9GZ54 P26038 54 60 MSN Moesin yes no 2 0.026776 52.683 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 3 1 2 1 1 1.3861 1.231 12.114 11 Median 1.2027 1.157 9.1047 3 0 Median 1.3216 1.126 5.7344 3 0 Median 1.2957 1.2948 NaN 1 0 Median 1.441 1.242 3.2461 2 0 Median 1.643 1.6875 NaN 1 0 Median 1.4973 1.2843 NaN 1 0 Median 61369000 26977000 34392000 19276000 8994200 10282000 15869000 6678800 9189900 22093000 9519100 12574000 3267800 1433500 1834200 692030 269870 422160 171690 81810 89884 10926 2139 11371 54717;54718;54719;54720;54721;54722;54723;54724;54725;54726;54727 54769;54770;54771;54772;54773 54770 5 GFSVVADTPELQR SQVRYKEEFEKNKGKGFSVVADTPELQRIK GKGFSVVADTPELQRIKKTQDQISNIKYHE K G F Q R I 1 1 0 1 0 1 1 1 0 0 1 0 0 1 1 1 1 0 0 2 0 0 13 0 1417.7201 Q14847;C9J9W2 Q14847 97 109 LASP1 LIM and SH3 domain protein 1 yes no 2 2.4217E-10 177.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 3 1 0.88847 0.75691 44.886 14 Median 1.1032 1.0665 19.208 4 0 Linear 0.87724 0.7293 1.5423 3 0 Median 1.1101 0.76568 21.915 3 0 Plateau 1.004 0.8417 1.9031 3 0 Median NaN NaN NaN 0 0 Median 0.1961 0.16785 NaN 1 0 Median 150020000 78758000 71264000 84988000 46035000 38953000 26469000 13816000 12653000 34300000 16632000 17668000 4075900 2123400 1952500 0 0 0 189130 151820 37310 10927 2901 11372 54728;54729;54730;54731;54732;54733;54734;54735;54736;54737;54738;54739;54740;54741 54774;54775;54776;54777;54778;54779;54780;54781;54782;54783;54784;54785;54786;54787;54788;54789;54790;54791 54778 18 GFSYLLAGR TRHPAATAQLETAVRGFSYLLAGRFADSHE LETAVRGFSYLLAGRFADSHELSELGRSSV R G F G R F 1 1 0 0 0 0 0 2 0 0 2 0 0 1 0 1 0 0 1 0 0 0 9 0 982.52362 E9PQW0;E9PMM3;Q9Y5Y5 E9PQW0 31 39 PEX16 Peroxisomal membrane protein PEX16 yes no 2 0.0014144 81.784 By MS/MS By matching By matching 1 1 1 1.1539 1.1143 9.7228 3 Median 1.1177 1.0478 NaN 1 0 Median 1.4895 1.2677 NaN 1 0 Median 1.1539 1.1143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7861100 3547900 4313200 6395300 2890000 3505300 807190 335910 471280 658630 322010 336620 0 0 0 0 0 0 0 0 0 10928 968 11373 54742;54743;54744 54792;54793 54792 2 GFTAAGILSAHK VGFIGAGQLAYALARGFTAAGILSAHKIIA LARGFTAAGILSAHKIIASSPEMNLPTVSA R G F H K I 3 0 0 0 0 0 0 2 1 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1171.635 Q96C36;A0A087WTV6;J3KR12 Q96C36 18 29 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 2 4.7903E-06 114.4 By MS/MS By matching By MS/MS 2 1 1 1.3119 1.1451 40.706 4 Median 0.81633 0.76545 42.263 2 0 Median 1.5119 1.2706 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6846 1.4116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65486000 27224000 38262000 43379000 18776000 24603000 11137000 4412300 6725100 0 0 0 10969000 4035500 6933800 0 0 0 0 0 0 10929 3615 11374 54745;54746;54747;54748 54794;54795;54796 54794 3 GFTAAGVLAAHK VGFIGAGQLAFALAKGFTAAGVLAAHKIMA LAKGFTAAGVLAAHKIMASSPDMDLATVSA K G F H K I 4 0 0 0 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1141.6244 P32322;E2QRB3;J3KQ22;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32;J3KTA8;J3QKT3;J3QRZ0 P32322 18 29 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 2 0.00013631 88.948 By MS/MS By MS/MS By MS/MS 1 1 1 1.238 1.1606 26.273 3 Median NaN NaN NaN 0 0 Median 1.238 1.0396 NaN 1 1 Median 1.2134 1.1606 NaN 1 0 Median 2.0287 1.714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8875300 3596500 5278800 0 0 0 3550300 1680400 1869900 3418900 1300700 2118200 1906100 615380 1290700 0 0 0 0 0 0 10930 2218 11375 54749;54750;54751 54797;54798;54799;54800 54799 4 GFTESFGAANISQAAR LSGQAQPPEGSEDPRGFTESFGAANISQAA FTESFGAANISQAARERDCESVCFIGRPWR R G F A R E 4 1 1 0 0 1 1 2 0 1 0 0 0 2 0 2 1 0 0 0 0 0 16 0 1625.7798 Q12789;H3BU37 Q12789 1958 1973 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 6.1853E-10 153.34 By MS/MS 1 0.94885 1.0342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94885 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20019000 9536400 10483000 0 0 0 0 0 0 20019000 9536400 10483000 0 0 0 0 0 0 0 0 0 10931 2758 11376 54752 54801;54802 54801 2 GFTGIDSDYEKPETPER DVKGLYKRARAGEIKGFTGIDSDYEKPETP TGIDSDYEKPETPERVLKTNLSTVSDCVHQ K G F E R V 0 1 0 2 0 0 3 2 0 1 0 1 0 1 2 1 2 0 1 0 0 0 17 1 1939.88 O95340 O95340 174 190 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 1.0377E-05 51.606 By MS/MS By MS/MS 1 1 0.97983 0.93854 2.4505 2 Median 0.95293 0.95494 NaN 1 0 Median 1.0075 0.92242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22814000 12596000 10218000 18787000 10677000 8110700 4026300 1919300 2107000 0 0 0 0 0 0 0 0 0 0 0 0 10932 1765 11377 54753;54754 54803;54804;54805 54803 3 GFTGIDSEYEKPEAPELVLK DVKGLYKKARAGEIKGFTGIDSEYEKPEAP DSEYEKPEAPELVLKTDSCDVNDCVQQVVE K G F L K T 1 0 0 1 0 0 4 2 0 1 2 2 0 1 2 1 1 0 1 1 0 0 20 1 2221.1154 O43252 O43252 184 203 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 8.6648E-05 37.672 By MS/MS 1 0.92911 0.8713 NaN 1 Median 0.92911 0.8713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12827000 6817800 6009200 12827000 6817800 6009200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10933 1561 11378 54755 54806 54806 1 GFTINEYTIRPLGVTGVAGEPLPVDSEK SDIFNKNMRAHALEKGFTINEYTIRPLGVT VTGVAGEPLPVDSEKDIFDYIQWKYREPKD K G F E K D 1 1 1 1 0 0 3 4 0 2 2 1 0 1 3 1 3 0 1 3 0 0 28 1 2958.5339 P06746;H0YBJ0;E5RHZ4 P06746 290 317 POLB DNA polymerase beta yes no 3 3.6555E-05 30.749 By MS/MS By matching 1 1 0.66398 0.66574 31.467 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46895 0.53293 NaN 1 0 Median 0.94013 0.83164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5645700 3525200 2120500 0 0 0 0 0 0 5340000 3346300 1993700 305690 178890 126800 0 0 0 0 0 0 10934 1876 11379 54756;54757 54807;54808 54807 2 GFTIPEAFR LPKLHIVQVVCKKYRGFTIPEAFRGVHRYL VCKKYRGFTIPEAFRGVHRYLSNAYAREEF R G F F R G 1 1 0 0 0 0 1 1 0 1 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1036.5342 O00299 O00299 196 204 CLIC1 Chloride intracellular channel protein 1 yes yes 2 0.00047799 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1 0.97864 0.88823 11.685 12 Median 0.95627 0.91244 4.6013 4 0 Median 1.0202 0.84835 2.7664 3 0 Median 0.93614 0.91146 1.3747 2 0 Median 1.0663 0.8767 NaN 1 0 Median 1.2055 1.1874 NaN 1 0 Median 0.87994 0.71669 NaN 1 0 Median 178230000 89302000 88924000 93708000 47431000 46276000 61686000 30671000 31015000 19423000 9543000 9880000 464810 220240 244570 2488000 1204600 1283300 457020 232350 224670 10935 1456 11380 54758;54759;54760;54761;54762;54763;54764;54765;54766;54767;54768;54769 54809;54810;54811;54812;54813;54814;54815;54816;54817;54818;54819;54820;54821;54822;54823;54824;54825 54810 17 GFTLGVEDILVKPK TCLARLFTAYLQLYRGFTLGVEDILVKPKA RGFTLGVEDILVKPKADVKRQRIIEESTHC R G F P K A 0 0 0 1 0 0 1 2 0 1 2 2 0 1 1 0 1 0 0 2 0 0 14 1 1514.8708 O95602;B9ZVN9 O95602 794 807 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2;3 6.6377E-05 87.298 By MS/MS By MS/MS By matching 1 2 2 1.0012 1.1035 18.41 5 Median NaN NaN NaN 0 0 Median 1.0089 0.97177 NaN 1 0 Median 0.98078 1.1288 3.2033 2 1 Median 1.0564 0.9792 33.074 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12090000 5981500 6108100 0 0 0 5264700 2717200 2547500 6652600 3184200 3468400 172250 80048 92203 0 0 0 0 0 0 10936 1781 11381 54770;54771;54772;54773;54774 54826;54827;54828;54829 54829 4 GFTLNDAANSR TQAMEVKAFAETHIKGFTLNDAANSRLIIT THIKGFTLNDAANSRLIITQVRRDYLKEAV K G F S R L 2 1 2 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1164.5523 P42704 P42704 1099 1109 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 5.1707E-10 177.36 By MS/MS By MS/MS 1 1 1.1935 1.0645 14.16 2 Median 1.0009 0.96308 NaN 1 0 Median 1.4231 1.1766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56327000 25061000 31265000 23038000 11669000 11369000 33289000 13393000 19897000 0 0 0 0 0 0 0 0 0 0 0 0 10937 2315 11382 54775;54776 54830;54831 54830 2 GFTPIPGTIEMLHPWNNEGAPPEDK VPLLLLMCHCGKGAKGFTPIPGTIEMLHPW MLHPWNNEGAPPEDKVVPSFLPVDQGGSLV K G F D K V 1 0 2 1 0 0 3 3 1 2 1 1 1 1 5 0 2 1 0 0 0 0 25 0 2746.3061 Q14126 Q14126 643 667 DSG2 Desmoglein-2 yes yes 3 0.066674 5.7053 By MS/MS 1 0.51016 0.52526 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51016 0.52526 NaN 1 0 Median NaN NaN NaN 0 0 Median 1819500 1182700 636760 0 0 0 0 0 0 0 0 0 0 0 0 1819500 1182700 636760 0 0 0 10938 2855 11383 54777 54832 54832 1 GFTPYYAR LFKVVRYEGFFSLWKGFTPYYARLGPHTVL GFFSLWKGFTPYYARLGPHTVLTFIFLEQM K G F A R L 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 2 0 0 0 8 0 973.46577 I3L1P8;Q02978 I3L1P8 270 277 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.039953 63.148 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10939 1277 11384 54778 54833 54833 1 GFTTAAYLR VHSQGPHHVCELCNKGFTTAAYLRIHAVKD CELCNKGFTTAAYLRIHAVKDHGLQAPRAD K G F L R I 2 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 9 0 998.51853 I3L4Y2;I3L0M3 I3L4Y2 28 36 MAZ yes no 2 0.00056678 113.7 By MS/MS By MS/MS By matching 3 3 1 1.0467 0.86667 33.668 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0561 1.0811 66.226 2 0 Median 1.0674 0.87756 15.891 3 0 Median NaN NaN NaN 0 0 Median 0.94892 0.76909 NaN 1 0 Median 17765000 9856000 7908700 0 0 0 0 0 0 13623000 7867700 5755300 3267900 1560400 1707500 0 0 0 873790 427920 445870 10940 1270 11385 54779;54780;54781;54782;54783;54784;54785 54834;54835;54836;54837 54836 4 GFTVMNENER LIVGVCSDELTHNFKGFTVMNENERYDAVQ THNFKGFTVMNENERYDAVQHCRYVDEVVR K G F E R Y 0 1 2 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1195.5292 C9J050;C9JEJ2;P49585;H7C1T3;C9J2E1;C9JPY0 C9J050 123 132 PCYT1A Choline-phosphate cytidylyltransferase A yes no 2 0.014222 39.022 By MS/MS By matching 1 1 0.85836 0.74667 84.461 2 Median NaN NaN NaN 0 0 Median 1.5806 1.3568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46613 0.41092 NaN 1 0 Median 1453700 663970 789750 0 0 0 1166800 517290 649510 0 0 0 0 0 0 0 0 0 286930 146690 140240 10941 666 11386 54786;54787 54838 54838 1 GFVDLVIK LVVRPYTPISSDDDKGFVDLVIKVYFKDTH ISSDDDKGFVDLVIKVYFKDTHPKFPAGGK K G F I K V 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 2 0 0 8 0 889.5273 P00387;B1AHF3 P00387 104 111 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 0.024816 43.124 By MS/MS By matching By matching 1 1 1 1.0921 1.0528 21.34 3 Median 1.0921 1.0528 NaN 1 0 Median 1.4711 1.2397 NaN 1 0 Median 0.86231 0.81199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7630800 3467700 4163100 4306400 2122200 2184100 2438500 915110 1523400 885870 430350 455520 0 0 0 0 0 0 0 0 0 10942 1816 11387 54788;54789;54790 54839 54839 1 GFVEFAAKPPAR KAVVVVDDRGRATGKGFVEFAAKPPARKAL TGKGFVEFAAKPPARKALERCGDGAFLLTT K G F A R K 3 1 0 0 0 0 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 12 1 1288.6928 Q8WXF1;X6RDA4 Q8WXF1 199 210 PSPC1 Paraspeckle component 1 yes no 2;3 1.5865E-05 132.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 7 6 4 3 0.73834 0.74738 23.289 23 Median 0.73834 0.74024 NaN 1 1 Median 0.81785 0.74809 23.831 2 0 Median 0.59585 0.67318 13.802 7 1 Median 0.94092 0.87278 9.4446 6 0 Median 0.65058 0.66718 41.008 4 0 Median 0.92068 0.83553 30.523 3 0 Median 323890000 187020000 136870000 14699000 7788400 6910300 9942900 5177300 4765500 207310000 127810000 79499000 58476000 29311000 29164000 27122000 13865000 13257000 6344800 3067500 3277300 10943 3520 11388 54791;54792;54793;54794;54795;54796;54797;54798;54799;54800;54801;54802;54803;54804;54805;54806;54807;54808;54809;54810;54811;54812;54813 54840;54841;54842;54843;54844;54845;54846;54847;54848;54849;54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864;54865;54866;54867;54868;54869;54870 54844 31 GFVEIQTPK QSGICHLFRETLINKGFVEIQTPKIISAAS ETLINKGFVEIQTPKIISAASEGGANVFTV K G F P K I 0 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 9 0 1017.5495 P14868 P14868 214 222 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 0.0036618 63.565 By MS/MS By MS/MS By MS/MS 1 1 1 1.0187 0.87495 33.999 3 Median 1.6594 1.5396 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8337 0.83651 NaN 1 0 Median 1.0187 0.87495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19042000 8101300 10940000 11644000 4095900 7547800 0 0 0 5091300 2901400 2189800 2306900 1104000 1202900 0 0 0 0 0 0 10944 2012 11389 54814;54815;54816 54871;54872;54873;54874 54874 4 GFVEPDHYVVVGAQR VLKEIKILNIFGVIKGFVEPDHYVVVGAQR GFVEPDHYVVVGAQRDAWGPGAAKSGVGTA K G F Q R D 1 1 0 1 0 1 1 2 1 0 0 0 0 1 1 0 0 0 1 4 0 0 15 0 1671.8369 P02786;G3V0E5 P02786 395 409 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2;3 3.3924E-06 90.108 By MS/MS By matching By matching 4 1 1 1.0156 1.0066 13.483 6 Median 1.058 1.0111 15.902 4 1 Median 1.0323 0.90309 NaN 1 0 Median 0.99911 1.072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41662000 18542000 23120000 37183000 16174000 21009000 1691000 811590 879400 2788200 1556900 1231200 0 0 0 0 0 0 0 0 0 10945 1836 11390 54817;54818;54819;54820;54821;54822 54875;54876;54877;54878;54879;54880 54880 6 GFVFITFK EAIELPMDPKLNKRRGFVFITFKEEEPVKK PKLNKRRGFVFITFKEEEPVKKVLEKKFHT R G F F K E 0 0 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 1 0 0 8 0 957.53239 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 196 203 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 0.019561 47.067 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 3 2 1.258 1.1496 7.3716 10 Median 1.3175 1.2923 NaN 1 0 Median 1.4026 1.1983 NaN 1 0 Median 1.1326 1.1516 0.041597 2 0 Median 1.3189 1.1044 NaN 1 0 Median 1.1091 1.1478 9.2799 3 0 Median 1.258 1.0565 1.8918 2 0 Median 16625000 7612000 9013000 507340 204730 302600 1280600 551820 728820 8406700 3987200 4419500 488480 210620 277860 2861300 1317700 1543600 3080600 1340000 1740600 10946 805 11391 54823;54824;54825;54826;54827;54828;54829;54830;54831;54832 54881;54882;54883;54884;54885 54882 5 GFVFITFKEEEPVKK EAIELPMDPKLNKRRGFVFITFKEEEPVKK GFVFITFKEEEPVKKVLEKKFHTVSGSKCE R G F K K V 0 0 0 0 0 0 3 1 0 1 0 3 0 3 1 0 1 0 0 2 0 0 15 2 1796.9713 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 196 210 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2;3;4 6.4379E-05 74.678 By MS/MS By MS/MS By matching By MS/MS By matching 1 6 4 5 4 0.95969 1.0031 15.773 20 Median 0.92908 0.95269 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94899 1.0132 13.78 6 0 Median 1.1675 1.0989 8.0161 4 0 Median 0.84092 0.92007 6.5332 5 0 Median 1.1285 0.9685 29.727 4 0 Median 263960000 135770000 128180000 7687400 3584100 4103300 0 0 0 138930000 70757000 68173000 5604600 2528300 3076200 95136000 49949000 45186000 16600000 8954200 7645600 10947 805 11392 54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848;54849;54850;54851;54852 54886;54887;54888;54889;54890;54891;54892;54893;54894;54895;54896;54897;54898;54899;54900 54894 15 GFVLDATDGR RSLIQFMKQVHQGVRGFVLDATDGRGILNA HQGVRGFVLDATDGRGILNATISVAEINHP R G F G R G 1 1 0 2 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1049.5142 O75976 O75976 798 807 CPD Carboxypeptidase D no no 2 0.0004183 111.74 By MS/MS By MS/MS 1 1 1.0599 0.94843 7.5726 2 Median 0.95774 0.89898 NaN 1 0 Median 1.1729 1.0006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19456000 9862800 9592700 11269000 5955200 5314000 8186300 3907600 4278700 0 0 0 0 0 0 0 0 0 0 0 0 10948 1714 11393 54853;54854 54901;54902 54902 2 GFVLQDTVEQLR QTKITQDIFQQLLKRGFVLQDTVEQLRCEH LKRGFVLQDTVEQLRCEHCARFLADRFVEG R G F L R C 0 1 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1403.7409 P56192;H0YHV5;H0YIC2 P56192 377 388 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 3.9932E-06 105.86 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0103 1.0004 24.185 6 Median 0.85854 0.83626 37.01 2 0 Median 1.0854 0.92698 24.967 2 0 Median 0.96044 1.2133 NaN 1 0 Median 1.0627 0.92116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48894000 22600000 26294000 22020000 10727000 11294000 24388000 10674000 13714000 2102000 1029100 1072800 383870 169730 214140 0 0 0 0 0 0 10949 2508 11394 54855;54856;54857;54858;54859;54860;54861 54903;54904;54905;54906;54907 54904 5 GFVPSPTSQPGGHESLVDR KLWNATKFALRGLGKGFVPSPTSQPGGHES SPTSQPGGHESLVDRWIRSRLTEAVRLSNQ K G F D R W 0 1 0 1 0 1 1 3 1 0 1 0 0 1 3 3 1 0 0 2 0 0 19 0 1965.9545 P26640;A0A140T936 P26640 967 985 VARS Valine--tRNA ligase yes no 2;3 1.9966E-20 106.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 0.82653 0.77122 12.616 8 Median 0.65859 0.6332 NaN 1 0 Median 0.91424 0.76864 NaN 1 0 Median 0.71843 0.78982 2.898 2 2 Median 0.84405 0.71238 15.797 3 1 Median NaN NaN NaN 0 0 Median 1.0829 0.89041 NaN 1 0 Median 124570000 67265000 57308000 34974000 20442000 14532000 6431700 3366700 3064900 45551000 25433000 20117000 37136000 17797000 19338000 0 0 0 481320 226380 254940 10950 2148 11395 54862;54863;54864;54865;54866;54867;54868;54869 54908;54909;54910;54911;54912;54913;54914;54915 54914 8 GFVQVDDGRK YQDRMNDIVKEFEDRGFVQVDDGRKIVFVP EFEDRGFVQVDDGRKIVFVPGCSIPLTIVK R G F R K I 0 1 0 2 0 1 0 2 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 1 1119.5673 P54136 P54136 353 362 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.00070925 93.374 By MS/MS By MS/MS 1 1 1.2574 1.2017 0.85399 2 Median 1.1898 1.1945 NaN 1 0 Median 1.3289 1.209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23640000 10452000 13188000 7184600 3490600 3694000 16456000 6961400 9494200 0 0 0 0 0 0 0 0 0 0 0 0 10951 2480 11396 54870;54871 54916;54917;54918;54919 54917 4 GFVTADMIR WFTLDHPPKDWAYSKGFVTADMIREHLPAP DWAYSKGFVTADMIREHLPAPGDDVLVLLC K G F I R E 1 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 1 0 0 9 0 1008.5063 Q9UHQ9 Q9UHQ9 255 263 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 2 0.00045597 125.25 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.2362 1.1042 30.352 6 Median 1.0804 1.0109 NaN 1 0 Median 0.97415 0.81523 37.542 2 0 Median 1.1997 1.1587 NaN 1 0 Median 1.3653 1.147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8483 1.592 NaN 1 0 Median 28011000 12656000 15356000 20368000 9423600 10944000 4680900 2046800 2634200 1724100 788220 935860 400280 143570 256710 0 0 0 837670 253360 584310 10952 4280 11397 54872;54873;54874;54875;54876;54877 54920;54921;54922;54923;54924 54920 5 GFVVINQK KIIELKRKVCGDSDKGFVVINQKGIDPFSL VCGDSDKGFVVINQKGIDPFSLDALSKEGI K G F Q K G 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 903.5178 P40227;Q92526 P40227 288 295 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 no no 2 0.0034154 97.596 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.1569 1.002 17.945 5 Median 1.2402 1.1757 22.612 2 0 Median 1.2475 1.0572 10.502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0872 0.85701 NaN 1 0 Median 36123000 16062000 20061000 13137000 5025900 8111500 22885000 10996000 11889000 0 0 0 0 0 0 0 0 0 100210 39896 60310 10953 2285;3532 11398 54878;54879;54880;54881;54882;54883 54925;54926 54926 2 GFWYDAEISR QVVMLNYNPDNPKERGFWYDAEISRKRETR NPKERGFWYDAEISRKRETRTARELYANVV R G F S R K 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 10 0 1242.5669 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 249 258 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.0015287 64.711 By MS/MS By matching By MS/MS 1 1 2 0.85686 0.84638 5.4687 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79515 0.84422 NaN 1 0 Median 0.985 0.84855 NaN 1 0 Median 0.85686 0.87676 8.784 2 0 Median NaN NaN NaN 0 0 Median 19655000 10400000 9255100 0 0 0 0 0 0 10847000 6180900 4666300 1409200 715200 694020 7398800 3503900 3894800 0 0 0 10954 20 11399 54884;54885;54886;54887 54927;54928;54929;54930;54931 54928 5 GFYDKDSSGWSSSK RRYIPPHLRNREATKGFYDKDSSGWSSSKD KGFYDKDSSGWSSSKDKDAYSSFGSRSDSR K G F S K D 0 0 0 2 0 0 0 2 0 0 0 2 0 1 0 5 0 1 1 0 0 0 14 1 1549.6685 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09 A0A2U3TZJ9 50 63 DDX3X ATP-dependent RNA helicase DDX3X yes no 2;3 1.0399E-05 96.64 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.2056 1.3499 21.426 7 Median 1.1124 1.0481 26.684 3 0 Median NaN NaN NaN 0 0 Median 1.2458 1.3895 4.09 2 0 Median NaN NaN NaN 0 0 Median 1.3226 1.4821 NaN 1 0 Median 1.1565 1.045 NaN 1 0 Median 46795000 22056000 24739000 18938000 9653100 9285300 0 0 0 22315000 9895100 12420000 0 0 0 4070900 1842400 2228500 1471100 665540 805600 10955 263 11400 54888;54889;54890;54891;54892;54893;54894 54932;54933;54934;54935;54936;54937 54937 6 GFYDPPR HRYIEIFRSSRSEIKGFYDPPRRLLGQRPG RSSRSEIKGFYDPPRRLLGQRPGPYDRPIG K G F P R R 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 7 0 850.39735 P31942 P31942 98 104 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.026776 64.776 By MS/MS By MS/MS 1 1 0.75021 0.68208 17.114 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59034 0.60434 NaN 1 1 Median 0.95337 0.76982 NaN 1 0 Median 16899000 9195600 7702900 0 0 0 0 0 0 0 0 0 0 0 0 7962700 4617800 3344900 8935900 4577800 4358100 10956 2208 11401 54895;54896 54938;54939 54939 2 GFYDPPRR HRYIEIFRSSRSEIKGFYDPPRRLLGQRPG SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG K G F R R L 0 2 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 8 1 1006.4985 P31942 P31942 98 105 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.022171 50.039 By MS/MS By matching 1 1 0.76323 0.73949 0.37719 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69098 0.73752 NaN 1 0 Median 0.84304 0.74147 NaN 1 0 Median 21582000 12153000 9428800 0 0 0 0 0 0 0 0 0 0 0 0 15122000 8949500 6172300 6459900 3203500 3256500 10957 2208 11402 54897;54898 54940 54940 1 GFYEGIMLVDGFK DREKLAEAKEKIYLKGFYEGIMLVDGFKGQ LKGFYEGIMLVDGFKGQKVQDVKKTIQKKM K G F F K G 0 0 0 1 0 0 1 3 0 1 1 1 1 2 0 0 0 0 1 1 0 0 13 0 1474.7166 Q9P2J5 Q9P2J5 471 483 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.048985 25.217 By MS/MS By matching By matching 1 1 1 1.1677 1.1677 14.761 3 Plateau 1.1677 1.1677 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1595 1.2428 NaN 1 0 Median 1.0539 0.93831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2459000 1314900 1144100 1888900 1043200 845720 0 0 0 499900 236120 263780 70192 35576 34616 0 0 0 0 0 0 10958 4224 11403 54899;54900;54901 54941 54941 1 GFYIYQEGVK TQMVSKGFLGRKSGKGFYIYQEGVKRKDLN RKSGKGFYIYQEGVKRKDLNSDMDSILASL K G F V K R 0 0 0 0 0 1 1 2 0 1 0 1 0 1 0 0 0 0 2 1 0 0 10 0 1202.5972 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 635 644 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00098255 101.54 By MS/MS By matching By MS/MS 2 1 1 1.3244 1.1943 22.683 4 Median 1.3244 1.178 4.9997 2 2 Median 2.1071 1.8424 NaN 1 0 Median 1.1718 1.1687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79264000 34333000 44931000 49710000 20760000 28951000 4998800 1693200 3305500 24555000 11880000 12674000 0 0 0 0 0 0 0 0 0 10959 1180 11404 54902;54903;54904;54905 54942;54943;54944;54945 54943 4 GFYLNQSTAYHFNPK ITAEDRQVSITASTRGFYLNQSTAYHFNPK GFYLNQSTAYHFNPKPASPRFLSHSLVELL R G F P K P 1 0 2 0 0 1 0 1 1 0 1 1 0 2 1 1 1 0 2 0 0 0 15 0 1785.8475 O75153;K7EIG1;I3L2B0;A0A494C0R8;I3L4B5 O75153 257 271 CLUH Clustered mitochondria protein homolog yes no 3 0.0027446 30.483 By MS/MS 1 1.0009 0.96246 NaN 1 Median 1.0009 0.96246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4386200 2526200 1860000 4386200 2526200 1860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10960 1651 11405 54906 54946;54947 54947 2 GGAAPEGPNEAEVTSGKPEQEVPDAEEEK DLTLDWLTETSEEAKGGAAPEGPNEAEVTS SGKPEQEVPDAEEEKSVSGTDVQEECREKG K G G E K S 4 0 1 1 0 1 8 4 0 0 0 2 0 0 4 1 1 0 0 2 0 0 29 1 2950.3316 P49321;E9PPR5 P49321 215 243 NASP Nuclear autoantigenic sperm protein yes no 3 7.4642E-14 59.893 By MS/MS By MS/MS 1 2 0.80267 0.74245 30.039 3 Median 0.46842 0.4894 NaN 1 1 Median 0.85327 0.80684 11.762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35133000 22952000 12182000 17709000 13931000 3778500 17424000 9020900 8403200 0 0 0 0 0 0 0 0 0 0 0 0 10961 2376 11406 54907;54908;54909 54948;54949;54950;54951 54948 4 GGAAVDPDSGLEHSAHVLEK EGINKSEKRMKLTLKGGAAVDPDSGLEHSA DPDSGLEHSAHVLEKGGKVFSATLGLVDIV K G G E K G 3 0 0 2 0 0 2 3 2 0 2 1 0 0 1 2 0 0 0 2 0 0 20 0 1987.9599 P09874 P09874 529 548 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 9.7835E-22 128.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 15 14 4 4 0.93574 0.87975 16.274 42 Median 0.75326 0.72426 18.353 3 0 Median 0.93013 0.79063 17.877 2 0 Median 0.83433 0.87198 16.853 15 1 Median 1.0884 0.96108 12.625 14 1 Median 0.87234 0.88261 24.111 4 0 Median 1.0164 0.83532 14.403 4 0 Median 3198200000 1599800000 1598400000 50432000 28005000 22427000 13955000 7049000 6905600 2103800000 1086700000 1017100000 901840000 413050000 488790000 101370000 52489000 48878000 26887000 12525000 14361000 10962 1922 11407 54910;54911;54912;54913;54914;54915;54916;54917;54918;54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937;54938;54939;54940;54941;54942;54943;54944;54945;54946;54947;54948;54949;54950;54951 54952;54953;54954;54955;54956;54957;54958;54959;54960;54961;54962;54963;54964;54965;54966;54967;54968;54969;54970;54971;54972;54973;54974;54975;54976;54977;54978;54979;54980;54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991;54992;54993;54994;54995;54996;54997;54998;54999;55000;55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015;55016;55017;55018 55000 67 GGADVNIR WRPRRLGGGLGGTRRGGADVNIRHSGRDDT GLGGTRRGGADVNIRHSGRDDTSRYDERPG R G G I R H 1 1 1 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 800.41407 P08621 P08621 202 209 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0056774 74.439 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.0974 1.0693 7.8137 4 Median NaN NaN NaN 0 0 Median 1.0931 0.95908 NaN 1 0 Median 1.0868 1.1422 NaN 1 0 Median 1.1759 1.0315 NaN 1 0 Median 1.1017 1.1084 NaN 1 0 Median NaN NaN NaN 0 0 Median 5211700 2298900 2912800 0 0 0 624610 268030 356570 2264600 1063700 1200800 247910 106820 141090 2074600 860330 1214300 0 0 0 10963 1905 11408 54952;54953;54954;54955 55019;55020;55021;55022;55023 55021 5 GGAEGELQALR IRVVRLQLEATERQRGGAEGELQALRARAE ERQRGGAEGELQALRARAEEAEAQKRQAQE R G G L R A 2 1 0 0 0 1 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1099.5622 Q15149 Q15149 1606 1616 PLEC Plectin yes yes 2 2.7905E-08 138.1 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.4131 1.1287 NaN 1 Median NaN NaN NaN 0 0 Median 1.4131 1.1287 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47273000 20205000 27068000 0 0 0 47273000 20205000 27068000 0 0 0 0 0 0 0 0 0 0 0 0 10964 2933 11409 54956;54957;54958;54959;54960 55024;55025;55026;55027;55028 55026 5 GGAEQFMEETER FTGCPKAKTCTFILRGGAEQFMEETERSLH ILRGGAEQFMEETERSLHDAIMIVRRAIKN R G G E R S 1 1 0 0 0 1 4 2 0 0 0 0 1 1 0 0 1 0 0 0 0 0 12 0 1382.5772 Q99832 Q99832 376 387 CCT7 T-complex protein 1 subunit eta yes yes 2 3.2286E-30 208.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 2 1.1884 1.0448 23.829 11 Median 1.166 1.0957 2.4504 2 0 Median 1.1691 0.93131 5.8876 3 0 Plateau 1.206 1.1947 NaN 1 0 Median 1.2518 1.0602 2.0646 2 0 Median 2.0937 2.1002 NaN 1 0 Median 1.0968 0.91011 7.1728 2 0 Median 373690000 165560000 208130000 253810000 112240000 141570000 77134000 34802000 42332000 28077000 12445000 15632000 7410400 3358700 4051700 5024600 1770500 3254100 2238600 940280 1298400 10965 3771 11410;11411 54961;54962;54963;54964;54965;54966;54967;54968;54969;54970;54971 55029;55030;55031;55032;55033;55034;55035;55036;55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047 55038 1823 19 GGAEVQIFAPDVPQMHVIDHTK HLDDLSKLILVHLSRGGAEVQIFAPDVPQM FAPDVPQMHVIDHTKGQPSEGESRNVLTES R G G T K G 2 0 0 2 0 2 1 2 2 2 0 1 1 1 2 0 1 0 0 3 0 0 22 0 2388.1896 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LP73;A0A2R8YDR7;F2Z2Q0;A0A096LP12;A0A096LNJ1;A0A2R8Y6K9 A0A096LPI6 84 105 C21orf33 yes no 3 2.9986E-09 51.469 By MS/MS By matching 1 1 0.62094 0.55389 32.605 2 Median 0.47208 0.43984 NaN 1 0 Median 0.81675 0.69751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9779300 5478000 4301400 8588900 4946900 3642000 1190400 531040 659380 0 0 0 0 0 0 0 0 0 0 0 0 10966 144 11412 54972;54973 55048 55048 1 GGAGVGSMTK FYTRAASTARHLYLRGGAGVGSMTKIYGGR HLYLRGGAGVGSMTKIYGGRQRNGVMPSHF R G G T K I 1 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 1 0 0 1 0 0 10 0 863.4171 P39019 P39019 68 77 RPS19 40S ribosomal protein S19 yes yes 2 0.038915 31.422 By MS/MS By matching By matching 1 1 1 1.236 1.0889 2.653 3 Median 1.2006 1.1316 NaN 1 0 Median 1.236 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3063 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1994200 894030 1100200 712680 312340 400350 1017900 461810 556120 0 0 0 263620 119890 143740 0 0 0 0 0 0 10967 2280 11413 54974;54975;54976 55049 55049 1 GGAHDYYNVLPNK FRAAALASGCTVEIKGGAHDYYNVLPNKSL IKGGAHDYYNVLPNKSLWKAYMENGRKLGI K G G N K S 1 0 2 1 0 0 0 2 1 0 1 1 0 0 1 0 0 0 2 1 0 0 13 0 1446.6892 Q8IYS1 Q8IYS1 309 321 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 3 0.00064111 62.14 By MS/MS By MS/MS By MS/MS 2 2 1 0.66897 0.62853 15.198 5 Median 0.73333 0.68899 12.99 2 2 Median NaN NaN NaN 0 0 Median 0.54037 0.5304 0.5769 2 2 Median 0.74065 0.66402 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30253000 17650000 12603000 12588000 6430000 6157600 0 0 0 11896000 7905800 3989800 5769400 3314200 2455200 0 0 0 0 0 0 10968 3345 11414 54977;54978;54979;54980;54981 55050;55051;55052;55053;55054 55054 5 GGALLTSPSGPGYHIMLPFITTFR SIHKIEEGHLAVYYRGGALLTSPSGPGYHI GPGYHIMLPFITTFRSVQTTLQTDEVKNVP R G G F R S 1 1 0 0 0 0 0 4 1 2 3 0 1 2 3 2 3 0 1 0 0 0 24 0 2532.3199 O75477;B0QZ43 O75477 39 62 ERLIN1 Erlin-1 yes no 3 0.028807 12.554 By MS/MS 1 0.66484 0.67601 NaN 1 Median 0.66484 0.67601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1412500 883820 528700 1412500 883820 528700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10969 1675 11415 54982 55055;55056 55055 2 GGALLTSTSGPGFHLMLPFITSYK AVHKIEEGHIGVYYRGGALLTSTSGPGFHL GPGFHLMLPFITSYKSVQTTLQTDEVKNVP R G G Y K S 1 0 0 0 0 0 0 4 1 1 4 1 1 2 2 3 3 0 1 0 0 0 24 0 2494.293 O94905;E5RHW4 O94905 37 60 ERLIN2 Erlin-2 yes no 3 0.060738 6.8749 By MS/MS By matching 1 1 0.88101 0.80518 24.247 2 Median 0.69864 0.67831 NaN 1 0 Median 1.111 0.95576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4594200 2344700 2249600 1315300 811480 503840 3278900 1533200 1745700 0 0 0 0 0 0 0 0 0 0 0 0 10970 848 11416 54983;54984 55057;55058 55058 2 GGAPFQFGGQR AQFEGTEQAPFLGSRGGAPFQFGGQRRPLL LGSRGGAPFQFGGQRRPLLSQLKGPRGGPP R G G Q R R 1 1 0 0 0 2 0 4 0 0 0 0 0 2 1 0 0 0 0 0 0 0 11 0 1120.5414 Q9BTC0 Q9BTC0 1883 1893 DIDO1 Death-inducer obliterator 1 yes yes 2 0.003026 50.607 By MS/MS 1 0.69667 0.76437 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69667 0.76437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6928800 4064300 2864500 0 0 0 0 0 0 6928800 4064300 2864500 0 0 0 0 0 0 0 0 0 10971 3824 11417 54985 55059 55059 1 GGATPPALLLLLSR MCQTAQSFCDSPGEKGGATPPALLLLLSRL KGGATPPALLLLLSRLCLDYETATISYILT K G G S R L 2 1 0 0 0 0 0 2 0 0 5 0 0 0 2 1 1 0 0 0 0 0 14 0 1377.8344 Q9UID3;H0YDX9;H0YEE1 Q9UID3 516 529 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes no 2 0.013211 32.008 By MS/MS By matching By matching By matching 1 1 1 1 0.77103 0.77588 26.778 4 Median 0.70553 0.70188 NaN 1 0 Median 0.73052 0.64684 NaN 1 0 Median 0.81379 0.85769 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1322 1.1804 NaN 1 0 Median NaN NaN NaN 0 0 Median 2880400 1603000 1277400 967110 567770 399330 1225400 670020 555360 469310 268720 200590 0 0 0 218570 96467 122100 0 0 0 10972 4289 11418 54986;54987;54988;54989 55060;55061 55060 2 GGDDLGTEIANTLYR FVDCSASATPEFEGRGGDDLGTEIANTLYR GGDDLGTEIANTLYRIFNNKSSVDLKTLCI R G G Y R I 1 1 1 2 0 0 1 3 0 1 2 0 0 0 0 0 2 0 1 0 0 0 15 0 1593.7635 Q15024 Q15024 97 111 EXOSC7 Exosome complex component RRP42 yes yes 2 0.00032647 66.289 By MS/MS By MS/MS 1 1 1.2027 1.0862 2.768 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1337 1.1077 NaN 1 0 Median 1.2758 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11148000 5015000 6133100 0 0 0 0 0 0 9446000 4277200 5168700 1702100 737770 964350 0 0 0 0 0 0 10973 2916 11419 54990;54991 55062;55063;55064;55065 55063 4 GGDGGESERFNPGELR ______________________________ GDGGESERFNPGELRMAQQQALRFRGPAPP R G G L R M 0 2 1 1 0 0 3 5 0 0 1 0 0 1 1 1 0 0 0 0 0 0 16 1 1675.755 O14776;G3V220 O14776 5 20 TCERG1 Transcription elongation regulator 1 yes no 3 4.4245E-05 60.209 By MS/MS 1 0.89844 1.0927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89844 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6821300 3271700 3549600 0 0 0 0 0 0 6821300 3271700 3549600 0 0 0 0 0 0 0 0 0 10974 1494 11420 54992 55066 55066 1 GGDGIKPPPIIGR RDLVEGPQYLMPPKKGGDGIKPPPIIGRFG KKGGDGIKPPPIIGRFGTSLKIGIVGLPNV K G G G R F 0 1 0 1 0 0 0 4 0 3 0 1 0 0 3 0 0 0 0 0 0 0 13 1 1275.7299 J3KQ32;Q9NTK5;C9JTK6 J3KQ32 26 38 OLA1 Obg-like ATPase 1 yes no 3 0.049789 26.206 By MS/MS 1 0.43724 0.46844 NaN 1 Median 0.43724 0.46844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5545300 4273400 1271900 5545300 4273400 1271900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10975 1315 11421 54993 55067 55067 1 GGDIMLWNFGIK AWHPTHPSTVAVGSKGGDIMLWNFGIKDKP GSKGGDIMLWNFGIKDKPTFIKGIGAGGSI K G G I K D 0 0 1 1 0 0 0 3 0 2 1 1 1 1 0 0 0 1 0 0 0 0 12 0 1349.6802 Q92466;A0A087X0X5;A0A087WW71;A0A087WYT8 Q92466 133 144 DDB2 DNA damage-binding protein 2 yes no 2 0.0042918 48.283 By MS/MS By MS/MS By matching 5 1 1 0.80829 0.80875 32.737 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80829 0.80875 14.683 5 0 Median 1.8979 1.6956 NaN 1 0 Median 0.68122 0.67287 NaN 1 0 Median NaN NaN NaN 0 0 Median 19084000 10044000 9040600 0 0 0 0 0 0 15862000 8952600 6908900 3097500 1024100 2073500 125440 67186 58252 0 0 0 10976 3527 11422;11423 54994;54995;54996;54997;54998;54999;55000 55068;55069;55070;55071;55072;55073 55068 1757 6 GGDLMAYDR SRARNLPLPPPPPPRGGDLMAYDRRGRPGD PPPPPRGGDLMAYDRRGRPGDRYDGMVGFS R G G D R R 1 1 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 0 996.43348 P61978;Q5T6W2 P61978 317 325 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 5 6 1.1787 1.0555 14.242 22 Median 1.061 1.0407 17.463 2 0 Median 0.98158 0.8672 12.414 3 0 Median 1.0895 1.0713 14.186 4 0 Median 1.2978 1.1105 4.9886 2 0 Median 1.0885 1.0916 13.848 5 0 Median 1.3276 1.0555 15.33 6 0 Median 194660000 92401000 102260000 8399000 3815200 4583800 16190000 6947900 9242500 99610000 48764000 50846000 30705000 13319000 17386000 32011000 16443000 15568000 7742000 3112300 4629700 10977 2565;3093 11424;11425 55001;55002;55003;55004;55005;55006;55007;55008;55009;55010;55011;55012;55013;55014;55015;55016;55017;55018;55019;55020;55021;55022 55074;55075;55076;55077;55078;55079;55080;55081;55082;55083;55084;55085;55086;55087;55088 55076 1238 15 GGDLMAYDRR SRARNLPLPPPPPPRGGDLMAYDRRGRPGD PPPPRGGDLMAYDRRGRPGDRYDGMVGFSA R G G R R G 1 2 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 1 1152.5346 P61978;Q5T6W2 P61978 317 326 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 2.4226E-07 166.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 1.0832 1.1206 10.989 12 Median 1.1581 1.1551 3.722 2 1 Median NaN NaN NaN 0 0 Median 1.0542 1.1161 3.6409 3 0 Median 1.093 0.98369 24.146 2 0 Median 0.93151 1.0066 5.4888 2 0 Median 1.337 1.182 12.138 3 0 Plateau 149760000 69817000 79938000 12631000 5067000 7563700 0 0 0 34011000 16548000 17464000 19440000 8391800 11049000 52817000 26375000 26443000 30856000 13435000 17420000 10978 2565;3093 11426 55023;55024;55025;55026;55027;55028;55029;55030;55031;55032;55033;55034 55089;55090;55091;55092;55093;55094;55095;55096;55097;55098;55099;55100;55101;55102;55103 55098 15 GGDPFWDGPGDPMR GPVGPRLLGPPPPPRGGDPFWDGPGDPMRG RGGDPFWDGPGDPMRGGPMRGGPGPGPGPY R G G M R G 0 1 0 3 0 0 0 4 0 0 0 0 1 1 3 0 0 1 0 0 0 0 14 0 1502.6249 Q96QC0 Q96QC0 675 688 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 0.0026176 42.001 By MS/MS By matching 1 2 0.67056 0.63557 7.5151 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59414 0.63557 NaN 1 0 Median 0.74169 0.63077 10.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2795500 1657900 1137600 0 0 0 0 0 0 2334600 1410700 923850 460930 247140 213790 0 0 0 0 0 0 10979 3718 11427 55035;55036;55037 55104 55104 1 GGDRIPADLR INAEEVVVGDLVEVKGGDRIPADLRIISAN LVEVKGGDRIPADLRIISANGCKVDNSSLT K G G L R I 1 2 0 2 0 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 10 1 1068.5676 P05023 P05023 195 204 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.053854 56.729 By MS/MS 1 1.4098 1.532 NaN 1 Median 1.4098 1.532 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2468900 837680 1631200 2468900 837680 1631200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10980 1857 11428 55038 55105 55105 1 GGDSIGETPTPGASK PGHGSGWAETPRTDRGGDSIGETPTPGASK GGDSIGETPTPGASKRKSRWDETPASQMGG R G G S K R 1 0 0 1 0 0 1 4 0 1 0 1 0 0 2 2 2 0 0 0 0 0 15 0 1372.647 O75533 O75533 319 333 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00024495 71.555 By MS/MS By MS/MS 1 1 1.0372 0.88367 1.2955 2 Median NaN NaN NaN 0 0 Median 1.032 0.8918 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0424 0.87561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4957800 2549600 2408200 0 0 0 3544200 1799000 1745200 0 0 0 1413600 750540 663080 0 0 0 0 0 0 10981 1683 11429 55039;55040 55106;55107;55108 55106 3 GGEDGPAIAIDLSGINETNDLKR DSRAYFHLLNQIAPKGGEDGPAIAIDLSGI AIDLSGINETNDLKRAGLMLQEADKLGCKQ K G G K R A 2 1 2 3 0 0 2 4 0 3 2 1 0 0 1 1 1 0 0 0 0 0 23 1 2354.1714 Q14651;C9JAM8 Q14651 312 334 PLS1 Plastin-1 yes no 3 5.4569E-05 33.348 By MS/MS By matching 1 1 0.76064 0.73606 20.869 2 Median 0.843 0.8531 NaN 1 0 Median 0.68632 0.63507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3172400 1663600 1508800 2433200 1250100 1183100 739200 413470 325730 0 0 0 0 0 0 0 0 0 0 0 0 10982 2884 11430 55041;55042 55109;55110 55110 2 GGEIQPVSVK LQATVVAVGSGSKGKGGEIQPVSVKVGDKV GSKGKGGEIQPVSVKVGDKVLLPEYGGTKV K G G V K V 0 0 0 0 0 1 1 2 0 1 0 1 0 0 1 1 0 0 0 2 0 0 10 0 1012.5553 P61604;B8ZZL8;B8ZZ54 P61604 57 66 HSPE1 10 kDa heat shock protein, mitochondrial yes no 2 0.00037374 108.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 0.99585 0.95369 8.1556 9 Median 0.96002 0.85653 6.1144 2 0 Median 1.2329 1.0111 4.2029 2 0 Median 0.93248 0.9421 4.8645 3 0 Median 1.1822 0.95369 NaN 1 0 Median 1.0091 1.0666 NaN 1 0 Median NaN NaN NaN 0 0 Median 219000000 102230000 116770000 91590000 45244000 46346000 108850000 48068000 60784000 12921000 6446400 6474200 5140300 2243000 2897400 500190 232120 268070 0 0 0 10983 2560 11431 55043;55044;55045;55046;55047;55048;55049;55050;55051 55111;55112;55113;55114;55115;55116;55117;55118;55119;55120;55121 55115 11 GGELLVHTGFLGSSQDR KPLSCCFVYHMYRERGGELLVHTGFLGSSQ ELLVHTGFLGSSQDRSAYQTIDSAEAPADP R G G D R S 0 1 0 1 0 1 1 4 1 0 3 0 0 1 0 2 1 0 0 1 0 0 17 0 1771.8853 Q6RW13 Q6RW13 114 130 AGTRAP Type-1 angiotensin II receptor-associated protein yes yes 2;3 1.821E-13 114.82 By MS/MS By MS/MS 4 2 1.5634 1.3187 15.356 5 Median 1.375 1.3187 13.732 3 1 Median 1.7825 1.4674 21.262 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50649000 21538000 29110000 36347000 16151000 20196000 14302000 5386900 8914700 0 0 0 0 0 0 0 0 0 0 0 0 10984 3180 11432 55052;55053;55054;55055;55056;55057 55122;55123;55124;55125;55126;55127;55128;55129 55124 8 GGELVYTDSEAR ETGLCLLPLTDKAAKGGELVYTDSEARDVF AAKGGELVYTDSEARDVFEKATVSAPFGKF K G G A R D 1 1 0 1 0 0 2 2 0 0 1 0 0 0 0 1 1 0 1 1 0 0 12 0 1295.5994 Q15149;H0YDN1 Q15149 3028 3039 PLEC Plectin yes no 2 0.0002496 84.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.2466 1.1337 18.634 5 Median 1.5123 1.5035 NaN 1 0 Median 1.4162 1.1337 NaN 1 0 Median 1.2302 1.3227 NaN 1 1 Median 1.2466 1.0859 NaN 1 0 Median 0.88156 0.9262 NaN 1 1 Median NaN NaN NaN 0 0 Median 36869000 15770000 21099000 6624600 2663100 3961600 17962000 6925500 11037000 5078700 2693000 2385700 3732200 1567800 2164400 3471300 1920300 1551000 0 0 0 10985 2933 11433 55058;55059;55060;55061;55062;55063 55130;55131;55132;55133;55134;55135;55136;55137;55138;55139 55135 10 GGELVYTDSEARDVFEK ETGLCLLPLTDKAAKGGELVYTDSEARDVF ELVYTDSEARDVFEKATVSAPFGKFQGKTV K G G E K A 1 1 0 2 0 0 3 2 0 0 1 1 0 1 0 1 1 0 1 2 0 0 17 1 1913.9007 Q15149;H0YDN1 Q15149 3028 3044 PLEC Plectin yes no 2;3 1.1593E-07 91.457 By MS/MS By MS/MS 2 1 1.1168 1.1676 30.961 3 Plateau 1.0959 1.1415 3.2056 2 0 Median NaN NaN NaN 0 0 Median 0.57728 0.66863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37169000 19354000 17815000 30638000 15253000 15385000 0 0 0 6531000 4100800 2430300 0 0 0 0 0 0 0 0 0 10986 2933 11434 55064;55065;55066 55140;55141;55142;55143;55144;55145 55141 6 GGEPQGPPFIK PETGLAFLPLSGGPRGGEPQGPPFIKYSTR GGPRGGEPQGPPFIKYSTRQALSTATATVS R G G I K Y 0 0 0 0 0 1 1 3 0 1 0 1 0 1 3 0 0 0 0 0 0 0 11 0 1125.5819 P58107;A0A075B730 P58107 474 484 EPPK1 Epiplakin yes no 2 0.011618 38.086 By MS/MS 1 1.4612 1.4614 NaN 1 Median 1.4612 1.4614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7986200 2776400 5209900 7986200 2776400 5209900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10987 2520 11435 55067 55146 55146 1 GGEVLDSSHDDIKLEK SMQQQVNQQIPQEKRGGEVLDSSHDDIKLE GEVLDSSHDDIKLEKSNILLLGPTGSGKTL R G G E K S 0 0 0 3 0 0 2 2 1 1 2 2 0 0 0 2 0 0 0 1 0 0 16 1 1740.853 O76031 O76031 271 286 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 3 0.0028347 28.212 By MS/MS By matching 1 1 0.88321 0.83187 7.7613 2 Median 0.92933 0.8788 NaN 1 0 Median 0.83937 0.78745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6200200 3231200 2969000 4222600 2278400 1944200 1977700 952840 1024800 0 0 0 0 0 0 0 0 0 0 0 0 10988 1718 11436 55068;55069 55147 55147 1 GGFCNFMHLKPISR REACCRQYEMGECTRGGFCNFMHLKPISRE RGGFCNFMHLKPISRELRRELYGRRRKKHR R G G S R E 0 1 1 0 1 0 0 2 1 1 1 1 1 2 1 1 0 0 0 0 0 0 14 1 1662.8123 P0DN76;Q01081 P0DN76 166 179 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 3;4 0.00091966 40.552 By MS/MS 2 0.90183 0.98279 4.0986 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90183 0.98279 4.0986 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8326400 4790300 3536100 0 0 0 0 0 0 8326400 4790300 3536100 0 0 0 0 0 0 0 0 0 10989 1930 11437 55070;55071 55148;55149 55148 2 GGFLPPEEIKER AAVEKQRVREEILAKGGFLPPEEIKERFDS LAKGGFLPPEEIKERFDSNCITPGTEFMDN K G G E R F 0 1 0 0 0 0 3 2 0 1 1 1 0 1 2 0 0 0 0 0 0 0 12 1 1370.7194 Q9H0D6 Q9H0D6 143 154 XRN2 5-3 exoribonuclease 2 yes yes 3 0.036242 20.585 By MS/MS By matching 1 1 0.94633 0.94593 12.704 2 Median 0.83326 0.86466 NaN 1 0 Median 1.0748 1.0348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828900 1523200 1305800 2338000 1281800 1056200 490970 241400 249570 0 0 0 0 0 0 0 0 0 0 0 0 10990 3924 11438 55072;55073 55150 55150 1 GGFLYLNR PITAVSLMEALSADKGGFLYLNRVLVILLQ EALSADKGGFLYLNRVLVILLQTLLQDEIA K G G N R V 0 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 0 0 8 0 938.4974 Q9UIG0 Q9UIG0 646 653 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.017646 48.504 By matching By MS/MS By MS/MS 1 2 1 1.039 1.0621 5.839 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93226 1.0365 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.039 1.0934 9.0555 2 0 Median 1.2998 1.0882 NaN 1 0 Median 10471000 5147600 5323600 0 0 0 0 0 0 1159700 571510 588190 0 0 0 8297900 4123300 4174600 1013600 452770 560820 10991 4290 11439 55074;55075;55076;55077 55151;55152 55151 2 GGGAFVQNSQPVAVR GQHPAASPTHPSAIRGGGAFVQNSQPVAVR GGGAFVQNSQPVAVRGGGGKQV________ R G G V R G 2 1 1 0 0 2 0 3 0 0 0 0 0 1 1 1 0 0 0 3 0 0 15 0 1485.7688 P33176 P33176 942 956 KIF5B Kinesin-1 heavy chain yes yes 2 6.743E-10 150.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1353 1.0539 20.874 6 Median 0.93057 0.89458 NaN 1 0 Median 1.0505 0.86787 NaN 1 0 Median 1.2339 1.3398 7.5439 2 0 Median 1.0877 0.92364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4774 1.2026 NaN 1 0 Median 90082000 42833000 47249000 37540000 18318000 19222000 36010000 17365000 18645000 10081000 4443000 5637600 5170200 2249200 2920900 0 0 0 1281100 457970 823150 10992 2221 11440 55078;55079;55080;55081;55082;55083 55153;55154;55155;55156;55157;55158;55159;55160;55161;55162;55163;55164 55161 12 GGGALSAVAATK DVASVIVTKLDGHAKGGGALSAVAATKSPI HAKGGGALSAVAATKSPIIFIGTGEHIDDF K G G T K S 4 0 0 0 0 0 0 3 0 0 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1001.5506 G3V4F7;P61011 G3V4F7 192 203 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.0021811 49.35 By MS/MS By MS/MS By MS/MS 1 2 1 1.0958 1.0229 25.45 4 Median 1.0093 0.95891 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3087 1.3251 31.287 2 0 Median 1.1472 0.9852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9277100 3823600 5453600 3892000 1631400 2260600 0 0 0 3007300 1186100 1821100 2377900 1006000 1371900 0 0 0 0 0 0 10993 1116 11441 55084;55085;55086;55087 55165;55166;55167;55168 55168 4 GGGDLPNSQEALQK LRPGLPGVPPFLLHRGGGDLPNSQEALQKL RGGGDLPNSQEALQKLSDVTLVPVSCSELE R G G Q K L 1 0 1 1 0 2 1 3 0 0 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1412.6896 O95865 O95865 238 251 DDAH2 N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 yes yes 2 0.047531 36.585 By MS/MS 1 0.86919 0.84958 NaN 1 Median 0.86919 0.84958 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2510200 1282200 1227900 2510200 1282200 1227900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10994 1801 11442 55088 55169 55169 1 GGGFFSGLGGKPSQDAANK SSSSGSVFGSGNTGRGGGFFSGLGGKPSQD FSGLGGKPSQDAANKNPFSSASGGFGSTAT R G G N K N 2 0 1 1 0 1 0 6 0 0 1 2 0 2 1 2 0 0 0 0 0 0 19 1 1793.8697 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;B7ZAV2;A0A494C0Y1 A0A494C1F2 1870 1888 NUP214 Nuclear pore complex protein Nup214 yes no 3 0.018056 18.635 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.87949 0.9198 16.908 4 Median NaN NaN NaN 0 0 Median 0.91759 0.89147 NaN 1 0 Median 0.81941 0.94902 NaN 1 0 Median 1.207 1.1328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84298 0.75225 NaN 1 0 Median 18002000 9147100 8855000 0 0 0 1659800 879320 780520 13283000 6944100 6338700 2435800 964090 1471700 0 0 0 623580 359510 264060 10995 467 11443 55089;55090;55091;55092 55170;55171;55172 55170 3 GGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAK SSSSGSVFGSGNTGRGGGFFSGLGGKPSQD ATSNTSNLFGNSGAKTFGGFASSSFGEQKP R G G A K T 5 0 5 1 0 1 0 11 0 0 2 3 0 5 2 9 3 0 0 0 0 0 47 2 4440.0643 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;B7ZAV2;A0A494C0Y1 A0A494C1F2 1870 1916 NUP214 Nuclear pore complex protein Nup214 yes no 4 0.00031787 24.884 By MS/MS 1 0.56937 0.65966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56937 0.65966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4643000 2636400 2006700 0 0 0 0 0 0 4643000 2636400 2006700 0 0 0 0 0 0 0 0 0 10996 467 11444 55093 55173 55173 1 GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG R G G G R F 0 1 0 0 0 0 0 25 0 0 0 0 0 6 0 4 0 0 0 0 0 0 36 0 2830.1869 CON__P35908 CON__P35908 93 128 yes yes 2;3 3.2439E-110 162.49 By MS/MS By MS/MS By MS/MS 4 5 3 0.044223 0.045172 125.67 6 Median 0.052537 0.052164 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.036517 0.039249 161.77 4 4 Median NaN NaN NaN 0 0 Median 0.037224 0.039117 NaN 1 1 Median NaN NaN NaN 0 0 Median 39517000 39088000 429200 9421200 9391500 29745 0 0 0 9106300 8797400 308870 0 0 0 20990000 20899000 90584 0 0 0 + 10997 764 11445 55094;55095;55096;55097;55098;55099;55100;55101;55102;55103;55104;55105 55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184;55185 55176 12 GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR GGGGGFGAAGGFGGRGGGFGGGSSFGGGSG FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG R G G G R F 0 1 0 0 0 0 0 20 0 0 0 0 0 5 0 4 0 0 0 0 0 0 30 0 2398.0111 CON__P35908v2;P35908 CON__P35908v2 93 122 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 1.3344E-91 157.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 1 9 3 10 0.10348 0.11411 101.41 17 Median 0.048292 0.046784 86.775 7 7 Median NaN NaN NaN 0 0 Median 0.20139 0.21513 57.612 4 4 Median 1.2978 1.1158 NaN 1 1 Median 0.15835 0.16612 63.502 5 5 Median NaN NaN NaN 0 0 Median 247570000 236760000 10811000 145840000 142280000 3562300 755180 755180 0 36199000 33938000 2261000 4100600 2813900 1286700 60670000 56969000 3700700 0 0 0 + 10998 765 11446 55106;55107;55108;55109;55110;55111;55112;55113;55114;55115;55116;55117;55118;55119;55120;55121;55122;55123;55124;55125;55126;55127;55128;55129;55130;55131;55132;55133;55134;55135;55136;55137;55138;55139;55140;55141;55142;55143 55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223 55186 38 GGGFGGNDNFGR SQRGRSGSGNFGGGRGGGFGGNDNFGRGGN GGRGGGFGGNDNFGRGGNFSGRGGFGGSRG R G G G R G 0 1 2 1 0 0 0 6 0 0 0 0 0 2 0 0 0 0 0 0 0 0 12 0 1153.4901 H0YH80;P09651;F8W6I7;A0A2R8Y4L2 P09651 207 218 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 2 0.0055495 40.715 By MS/MS By MS/MS By matching 1 1 1 0.76786 0.62586 48.932 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38559 0.37987 NaN 1 0 Median 1.2084 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76786 0.62586 NaN 1 0 Median 12951000 8939600 4010900 0 0 0 0 0 0 6897000 5583200 1313900 1298200 572100 726100 0 0 0 4755300 2784300 1970900 10999 1919;365;1183 11447 55144;55145;55146 55224;55225 55225 2 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK RERARRERERKEELRGGGGDMAEPSEAGDA PGELGPDGPDGPEEKGRDRDRERRRSHRSE R G G E K G 3 0 0 6 0 0 5 10 0 0 1 1 1 0 8 1 0 0 0 0 0 0 36 0 3372.3848 P08621 P08621 311 346 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 3 1.7464E-08 50.627 By MS/MS 1 0.2412 0.23506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2412 0.23506 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10310000 8788200 1522000 0 0 0 0 0 0 10310000 8788200 1522000 0 0 0 0 0 0 0 0 0 11000 1905 11448 55147 55226 55226 1 GGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDK GGNPGGPNPAAQAARGGGGGAGEQQQQAGS GQPGAPATPGTAGDKGQGPPGSGQSQQHIE R G G D K G 6 0 0 1 0 6 1 12 1 0 0 1 0 0 6 1 4 0 0 0 0 0 39 0 3479.605 P10589 P10589 32 70 NR2F1 COUP transcription factor 1 yes yes 4 0.049538 11.891 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1428500 1428500 0 0 0 0 0 0 0 1428500 1428500 0 0 0 0 0 0 0 0 0 0 11001 1941 11449 55148 55227 55227 1 GGGGGGFRGFSSGSAVVSGGSR ______________________________ RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G G S R R 1 2 0 0 0 0 0 10 0 0 0 0 0 2 0 5 0 0 0 2 0 0 22 1 1898.8983 CON__P35908;CON__P35908v2;P35908 CON__P35908 13 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 9.7739E-19 85.805 By MS/MS 1 0.068086 0.068756 NaN 1 Median NaN NaN NaN 0 0 Median 0.068086 0.068756 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5172100 4761000 411030 0 0 0 5172100 4761000 411030 0 0 0 0 0 0 0 0 0 0 0 0 + 11002 764;765 11450 55149 55228 55228 1 GGGGGGFRGFSSGSAVVSGGSRR ______________________________ GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG R G G R R S 1 3 0 0 0 0 0 10 0 0 0 0 0 2 0 5 0 0 0 2 0 0 23 2 2054.9994 CON__P35908;CON__P35908v2;P35908 CON__P35908 13 35 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 0.0002848 48.229 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2722500 2722500 0 0 0 0 2722500 2722500 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11003 764;765 11451 55150 55229 55229 1 GGGGGGPGEGFDVAK KARLAKLRRELITPKGGGGGGPGEGFDVAK GGGGGGPGEGFDVAKTGDARIGFVGFPSVG K G G A K T 1 0 0 1 0 0 1 8 0 0 0 1 0 1 1 0 0 0 0 1 0 0 15 0 1260.5735 Q9Y295 Q9Y295 47 61 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.0014794 39.179 By MS/MS 1 0.91488 0.77324 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91488 0.77324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2112800 1034700 1078100 0 0 0 0 0 0 0 0 0 2112800 1034700 1078100 0 0 0 0 0 0 11004 4382 11452 55151 55230 55230 1 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR SVSTSHTTISGGGSRGGGGGGYGSGGSSYG GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG R G G G R G 0 1 0 0 0 0 0 21 0 0 0 0 0 0 0 6 0 0 3 0 0 0 31 0 2382.9446 P04264;CON__P04264 P04264 519 549 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 1.5139E-179 223.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 16 6 14 10 8 0.0097323 0.0097305 NaN 1 Median 0.0097323 0.0097305 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 285360000 285320000 35174 54932000 54897000 35174 55392000 55392000 0 15870000 15870000 0 42394000 42394000 0 55402000 55402000 0 61367000 61367000 0 + 11005 1848 11453 55152;55153;55154;55155;55156;55157;55158;55159;55160;55161;55162;55163;55164;55165;55166;55167;55168;55169;55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184;55185;55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198;55199;55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222 55231;55232;55233;55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244;55245;55246;55247;55248;55249;55250;55251;55252;55253;55254;55255;55256;55257;55258;55259;55260;55261;55262;55263;55264;55265;55266;55267;55268;55269;55270;55271;55272;55273;55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284;55285;55286;55287;55288;55289;55290;55291;55292;55293;55294;55295;55296;55297;55298;55299;55300;55301;55302;55303;55304 55264 74 GGGGGPAYGPPPSLHAR TVSIASRSREVSGFRGGGGGPAYGPPPSLH GGGPAYGPPPSLHAREGRYERRLDGASDNR R G G A R E 2 1 0 0 0 0 0 6 1 0 1 0 0 0 4 1 0 0 1 0 0 0 17 0 1546.7641 Q96T58 Q96T58 109 125 SPEN Msx2-interacting protein yes yes 3 0.045278 20.65 By MS/MS 1 5.1816 5.4703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.1816 5.4703 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10274000 1213600 9060300 0 0 0 0 0 0 10274000 1213600 9060300 0 0 0 0 0 0 0 0 0 11006 3741 11454 55223 55305 55305 1 GGGGGQDNGLEGLGNDSR KRGERGSERGRDEARGGGGGQDNGLEGLGN GGQDNGLEGLGNDSRDMYMESEGGDGYLAP R G G S R D 0 1 2 2 0 1 1 8 0 0 2 0 0 0 0 1 0 0 0 0 0 0 18 0 1658.7245 P08621 P08621 394 411 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 5.5977E-32 196.02 By MS/MS By MS/MS By MS/MS 1 1 1 1.0003 0.97618 20.519 3 Median 1.0003 0.97618 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92749 0.92458 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3564 1.3512 NaN 1 0 Median NaN NaN NaN 0 0 Median 36083000 17189000 18894000 4542300 2203600 2338700 0 0 0 15450000 7769400 7680200 0 0 0 16091000 7216100 8874800 0 0 0 11007 1905 11455 55224;55225;55226 55306;55307;55308;55309 55309 4 GGGGNFGPGPGSNFR SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR GGGGNFGPGPGSNFRGGSDGYGSGRGFGDG R G G F R G 0 1 2 0 0 0 0 7 0 0 0 0 0 2 2 1 0 0 0 0 0 0 15 0 1376.6222 P22626 P22626 214 228 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 3.4848E-40 190.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 4 9 6 0.91612 0.77823 13.709 27 Median 0.82952 0.80433 17.479 2 1 Median 0.89716 0.76284 7.3833 2 0 Median 0.78729 0.81144 11.543 4 0 Median 1.0345 0.86212 11.953 4 0 Median 0.75842 0.77593 19.406 9 0 Median 0.96599 0.77573 4.7541 6 0 Median 5503900000 3041700000 2462200000 85169000 47479000 37690000 116650000 61740000 54905000 839750000 476830000 362920000 493750000 247660000 246090000 3366100000 1904200000 1461900000 602420000 303770000 298650000 11008 2103 11456 55227;55228;55229;55230;55231;55232;55233;55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244;55245;55246;55247;55248;55249;55250;55251;55252;55253;55254 55310;55311;55312;55313;55314;55315;55316;55317;55318;55319;55320;55321;55322;55323;55324;55325;55326;55327;55328;55329;55330;55331;55332;55333;55334;55335;55336;55337;55338;55339;55340;55341;55342;55343;55344;55345;55346;55347;55348;55349;55350;55351;55352;55353;55354;55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370 55310 61 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR AGGGPPPGPPGAGDRGGGGPGGGGPGGGSA GGPSQPPGGGGPGIRKDAFADAVQRARQIA R G G I R K 1 1 0 0 0 1 0 18 0 1 0 0 0 0 6 2 0 0 0 0 0 0 30 0 2269.0584 Q92945;A0A087WTP3 Q92945 41 70 KHSRP Far upstream element-binding protein 2 yes no 2;3 2.4416E-129 241.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 1 1 0.35671 0.36326 13.031 9 Median 0.29395 0.28497 NaN 1 0 Median 0.45282 0.39236 NaN 1 0 Median 0.34197 0.36042 8.9578 5 1 Median 0.44934 0.38728 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5273 0.42933 NaN 1 0 Median 205670000 149420000 56252000 3498500 2858100 640450 3952100 2834200 1117900 184340000 134470000 49870000 12351000 8362100 3989100 0 0 0 1531600 897270 634290 11009 3568 11457 55255;55256;55257;55258;55259;55260;55261;55262;55263 55371;55372;55373;55374;55375;55376;55377;55378;55379;55380;55381;55382;55383;55384 55382 14 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK AGGGPPPGPPGAGDRGGGGPGGGGPGGGSA GPSQPPGGGGPGIRKDAFADAVQRARQIAA R G G R K D 1 1 0 0 0 1 0 18 0 1 0 1 0 0 6 2 0 0 0 0 0 0 31 1 2397.1534 Q92945;A0A087WTP3 Q92945 41 71 KHSRP Far upstream element-binding protein 2 yes no 3 4.2874E-15 60.419 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 0.39557 0.41306 23.101 7 Median 0.34836 0.35713 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.3766 0.4127 11.474 2 0 Median 0.73507 0.70419 NaN 1 0 Median 0.3746 0.41306 NaN 1 0 Median 0.48652 0.4346 17.357 2 0 Median 46419000 31114000 15304000 3874500 2529100 1345400 0 0 0 35653000 24236000 11416000 785430 369990 415440 3599100 2351300 1247800 2506800 1627600 879160 11010 3568 11458 55264;55265;55266;55267;55268;55269;55270 55385;55386;55387;55388;55389;55390;55391;55392;55393;55394;55395 55388 11 GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR SSSGYGGGSSRVCGRGGGGSFGYSYGGGSG FSASSLGGGFGGGSRGFGGASGGGYSSSGG R G G S R G 1 1 0 0 0 0 0 17 0 0 1 0 0 3 0 7 0 0 2 0 0 0 32 0 2704.1538 P35527;CON__P35527 P35527 64 95 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 1.2984E-132 186.3 By MS/MS By MS/MS By MS/MS 12 3 7 0.023863 0.025158 87.964 7 Median 0.017975 0.017089 41.889 2 2 Median NaN NaN NaN 0 0 Median 0.074579 0.079938 22.722 2 2 Median NaN NaN NaN 0 0 Median 0.02377 0.025158 80.312 3 3 Median NaN NaN NaN 0 0 Median 159250000 157430000 1819600 82325000 81673000 651830 0 0 0 7695600 7407400 288200 0 0 0 69234000 68354000 879540 0 0 0 + 11011 2242 11459 55271;55272;55273;55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284;55285;55286;55287;55288;55289;55290;55291;55292 55396;55397;55398;55399;55400;55401;55402;55403;55404;55405;55406;55407;55408;55409;55410;55411;55412;55413;55414;55415;55416;55417 55398 22 GGGGSGGYYGQGGMSGGGWR SGGYGTPDGLGGYGRGGGGSGGYYGQGGMS GGYYGQGGMSGGGWRGMY____________ R G G W R G 0 1 0 0 0 1 0 12 0 0 0 0 1 0 0 2 0 1 2 0 0 0 20 0 1803.7383 P31942 P31942 324 343 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 4.9159E-19 147.26 By matching By matching By MS/MS By matching 1 1 3 2 1.1202 1.0405 11.626 7 Median NaN NaN NaN 0 0 Median 1.206 1.023 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4861 1.2758 NaN 1 0 Median 1.0508 1.0645 3.6724 3 0 Median 1.1221 0.92379 7.4472 2 0 Median 60948000 29701000 31247000 0 0 0 946530 522740 423790 0 0 0 463740 167020 296720 56807000 27731000 29076000 2730800 1280300 1450500 11012 2208 11460;11461 55293;55294;55295;55296;55297;55298;55299 55418;55419;55420;55421;55422 55421 943 5 GGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSR RGGNFSGRGGFGGSRGGGGYGGSGDGYNGF GGYGGGGPGYSGGSRGYGSGGQGYGNQGSG R G G S R G 0 1 2 2 0 0 0 19 0 0 0 0 0 1 1 3 0 0 4 0 0 0 33 0 2873.1298 P09651 P09651 233 265 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 3 1.9934E-09 39.113 By matching By MS/MS 1 1 0.83182 0.7843 14.876 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99755 0.87129 NaN 1 0 Median 0.69363 0.70599 NaN 1 0 Median NaN NaN NaN 0 0 Median 9993200 5479500 4513700 0 0 0 0 0 0 0 0 0 639610 338200 301420 9353600 5141300 4212300 0 0 0 11013 1919 11462 55300;55301 55423 55423 1 GGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMK RGGNFSGRGGFGGSRGGGGYGGSGDGYNGF FGNYNNQSSNFGPMKGGNFEGRSSGPHGGG R G G M K G 0 0 8 3 0 1 0 17 0 0 0 1 1 4 1 5 0 0 4 0 0 0 45 0 4404.7336 H0YH80;A0A2R8Y4L2 A0A2R8Y4L2 188 232 HNRNPA1 no no 3;4 8.1528E-11 47.049 By MS/MS By matching By MS/MS 2 2 2 0.82697 0.76892 8.2054 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77022 0.74084 2.2813 2 0 Median 0.891 0.76599 4.3213 2 0 Median 0.85658 0.84754 10.788 2 0 Median NaN NaN NaN 0 0 Median 21701000 11059000 10642000 0 0 0 0 0 0 17106000 8570500 8535200 314770 155300 159470 4280200 2333200 1946900 0 0 0 11014 365;1183 11463 55302;55303;55304;55305;55306;55307 55424;55425;55426;55427;55428 55424 5 GGGHILPYDQPLR GYIRQAGDFHQVIIRGGGHILPYDQPLRAF IRGGGHILPYDQPLRAFDMINRFIYGKGWD R G G L R A 0 1 0 1 0 1 0 3 1 1 2 0 0 0 2 0 0 0 1 0 0 0 13 0 1421.7415 Q9H3G5;H7C0X5;H7C218 Q9H3G5 445 457 CPVL Probable serine carboxypeptidase CPVL yes no 2;3 2.6903E-07 99.215 By MS/MS By MS/MS By MS/MS 2 4 3 1.6059 1.3824 58.65 9 Median 2.4589 2.3244 27.025 2 2 Median NaN NaN NaN 0 0 Median 0.82229 0.83341 59.182 4 1 Median 1.6059 1.3824 38.731 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109400000 46972000 62429000 46948000 12067000 34880000 0 0 0 43805000 26235000 17570000 18648000 8669600 9978300 0 0 0 0 0 0 11015 3952 11464 55308;55309;55310;55311;55312;55313;55314;55315;55316 55429;55430;55431;55432;55433;55434;55435 55435 7 GGGHVAQIYAIR GKERFAGVDIRVRVKGGGHVAQIYAIRQSI RVKGGGHVAQIYAIRQSISKALVAYYQKYV K G G I R Q 2 1 0 0 0 1 0 3 1 2 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1240.6677 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 74 85 RPS16 40S ribosomal protein S16 yes no 2;3 5.8348E-15 161.79 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 3 1 1 4 1.235 1.1234 10.753 18 Median 1.1305 1.0532 12.23 4 0 Median 1.2296 1.0173 12.459 5 2 Median 1.2167 1.2279 7.5882 3 0 Median 1.4859 1.2327 NaN 1 0 Median 1.0421 1.0227 NaN 1 0 Median 1.5385 1.2049 8.2452 4 0 Median 658710000 287820000 370890000 289890000 132000000 157890000 221460000 94376000 127090000 99461000 44489000 54971000 4128200 1668800 2459300 1861200 872770 988390 41899000 14408000 27491000 11016 2574 11465 55317;55318;55319;55320;55321;55322;55323;55324;55325;55326;55327;55328;55329;55330;55331;55332;55333;55334 55436;55437;55438;55439;55440;55441;55442;55443;55444;55445;55446;55447;55448;55449;55450;55451;55452;55453;55454;55455;55456;55457;55458;55459;55460;55461;55462;55463;55464 55455 28 GGGKIRK DIRAKPEYHKFLIGKGGGKIRKVRDSTGAR YHKFLIGKGGGKIRKVRDSTGARVIFPAAE K G G R K V 0 1 0 0 0 0 0 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 7 2 714.45006 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 746 752 HDLBP Vigilin yes no 1 0.05857 16.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4327800 0 4327800 4327800 0 4327800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11017 4 11466 55335 55465 55465 1 GGGNQVSLLNVVMDLKK YKYILTRNFEALNARGGGNQVSLLNVVMDL GNQVSLLNVVMDLKKCCNHPYLFPVAAMEA R G G K K C 0 0 2 1 0 1 0 3 0 0 3 2 1 0 0 1 0 0 0 3 0 0 17 1 1770.9662 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 1001 1017 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.007334 23.799 By matching By matching By MS/MS By matching By matching 1 2 2 1 2 1.1185 1.1888 34.289 8 Median 1.3153 1.3907 NaN 1 0 Median 0.82052 0.78529 54.93 2 0 Median 1.1544 1.3241 11.544 2 0 Median 1.4695 1.3662 NaN 1 0 Median 0.83206 0.89948 19.285 2 0 Median NaN NaN NaN 0 0 Median 11532000 5587500 5944400 311680 130470 181210 988470 509640 478830 8158000 3893800 4264200 276950 95606 181340 1796800 957990 838810 0 0 0 11018 246 11467 55336;55337;55338;55339;55340;55341;55342;55343 55466;55467 55467 2 GGGPAGAGGEAPAALR LCAVSGPRQAEGGERGGGPAGAGGEAPAAL GGPAGAGGEAPAALRGRLLCDFRRAPFAGR R G G L R G 5 1 0 0 0 0 1 6 0 0 1 0 0 0 2 0 0 0 0 0 0 0 16 0 1307.6582 Q5RKV6 Q5RKV6 78 93 EXOSC6 Exosome complex component MTR3 yes yes 2 1.5886E-06 89.548 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 0.96462 0.86688 10.27 7 Median 0.79083 0.74162 NaN 1 0 Median 1.0684 0.90564 NaN 1 0 Median 0.85225 0.83048 19.595 2 0 Median 1.0297 0.85609 1.7718 2 0 Median 0.88123 0.88262 NaN 1 0 Median NaN NaN NaN 0 0 Median 58208000 32272000 25937000 6341900 3178700 3163100 2598700 1282300 1316400 37093000 21245000 15848000 5365500 2571300 2794200 6808900 3994000 2814900 0 0 0 11019 3072 11468 55344;55345;55346;55347;55348;55349;55350 55468;55469;55470;55471;55472;55473;55474;55475;55476;55477;55478;55479;55480;55481 55479 14 GGGQEERPFVAR KLGEMRLKEAGTVGRGGGQEERPFVARFGF VGRGGGQEERPFVARFGFDVVTCCGYLPQV R G G A R F 1 2 0 0 0 1 2 3 0 0 0 0 0 1 1 0 0 0 0 1 0 0 12 1 1301.6476 Q9HA64;I3L2G3 Q9HA64 131 142 FN3KRP Ketosamine-3-kinase yes no 3 0.00026821 60.255 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.87474 0.85739 27.514 4 Median 0.51662 0.55617 NaN 1 0 Median 1.0164 0.93552 NaN 1 0 Median 0.75285 0.78579 NaN 1 0 Median 1.1181 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8475500 4355700 4119800 2022900 1174900 848020 2566200 1193200 1373000 1537300 885050 652230 2349100 1102600 1246500 0 0 0 0 0 0 11020 4005 11469 55351;55352;55353;55354 55482;55483;55484 55484 3 GGGQIIPTAR FDVHDVTLHADAIHRGGGQIIPTARRCLYA DAIHRGGGQIIPTARRCLYASVLTAQPRLM R G G A R R 1 1 0 0 0 1 0 3 0 2 0 0 0 0 1 0 1 0 0 0 0 0 10 0 968.54033 P13639;Q15029;K7EP67;K7EJ74 P13639 717 726 EEF2;EFTUD2 Elongation factor 2;116 kDa U5 small nuclear ribonucleoprotein component no no 2 0.00034745 114.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 2 2 2 2 0.94614 0.89009 18.949 19 Median 1.0228 0.97568 33.449 4 0 Median 0.88959 0.76437 6.8237 7 0 Median 0.86944 0.93837 7.47 2 0 Median 1.0087 0.86403 14.158 2 0 Median 1.0928 1.1138 9.5805 2 0 Median 1.1622 0.94408 3.7673 2 0 Median 262250000 133590000 128670000 56908000 27751000 29157000 158170000 83301000 74869000 15107000 7044400 8062200 12993000 6343600 6648900 10451000 4881400 5569200 8626600 4264400 4362100 11021 1992;2917 11470 55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373 55485;55486;55487;55488;55489;55490;55491;55492;55493;55494;55495;55496;55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509;55510 55493 26 GGGSAAAAAAAAASGGAGSDNSVEHSDYR LDNMLLAEGVAGPEKGGGSAAAAAAAAASG GGAGSDNSVEHSDYRAKLSQIRQIYHTELE K G G Y R A 10 1 1 2 0 0 1 6 1 0 0 0 0 0 0 5 0 0 1 1 0 0 29 0 2534.1018 H0YKH1;A0A087X0P4;H0YLF5;A0A0A0MTI0;P40424;H0YLD4;H0YLT4;H0YLB0;F8WA05;H0YLM3 H0YKH1 51 79 PBX1 Pre-B-cell leukemia transcription factor 1 yes no 3 1.2982E-59 146.25 By MS/MS By MS/MS 2 2 0.91286 0.88872 17.225 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77932 0.81277 10.494 2 0 Median 1.1857 1.016 16.79 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68360000 37671000 30689000 0 0 0 0 0 0 60925000 34595000 26329000 7435700 3075600 4360100 0 0 0 0 0 0 11022 108 11471 55374;55375;55376;55377 55511;55512;55513;55514;55515;55516 55514 6 GGGSAAAAAAAAASGGGVSPDNSIEHSDYR LDNMLLAEGVAGPEKGGGSAAAAAAAAASG GGVSPDNSIEHSDYRSKLAQIRHIYHSELE K G G Y R S 9 1 1 2 0 0 1 6 1 1 0 0 0 0 1 5 0 0 1 1 0 0 30 0 2673.2015 P40425 P40425 133 162 PBX2 Pre-B-cell leukemia transcription factor 2 yes yes 3 2.6896E-37 94.006 By MS/MS By matching 1 2 0.76243 0.65881 6.5871 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62162 0.61029 NaN 1 0 Median 0.7818 0.67705 3.8622 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22286000 11920000 10366000 0 0 0 0 0 0 16865000 9484500 7380400 5421200 2435600 2985700 0 0 0 0 0 0 11023 2286 11472 55378;55379;55380 55517;55518 55518 2 GGGSAAAAAAAAASGGSSDNSIEHSDYR LDNMLLAEGVSGPEKGGGSAAAAAAAAASG SGGSSDNSIEHSDYRAKLTQIRQIYHTELE K G G Y R A 9 1 1 2 0 0 1 5 1 1 0 0 0 0 0 6 0 0 1 0 0 0 28 0 2507.0909 Q5JS98;P40426;U3KQA2;H0Y5D0 Q5JS98 126 153 PBX3 Pre-B-cell leukemia transcription factor 3 yes no 3 3.2869E-21 72.474 By MS/MS By matching 1 1 1.1904 1.1682 13.46 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97677 1.0621 NaN 1 0 Median 1.4506 1.2848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9228700 4164000 5064700 0 0 0 0 0 0 8346000 3779900 4566100 882690 384110 498580 0 0 0 0 0 0 11024 2287 11473 55381;55382 55519 55519 1 GGGVGGFLPAMK ALEKLMFEELRNACRGGGVGGFLPAMKQIG ACRGGGVGGFLPAMKQIGNVAALPGIVHRS R G G M K Q 1 0 0 0 0 0 0 5 0 0 1 1 1 1 1 0 0 0 0 1 0 0 12 0 1089.5641 Q9Y3I0 Q9Y3I0 56 67 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0044858 43.442 By MS/MS By MS/MS 1 2 1.2068 1.0367 62.26 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0379 1.008 NaN 1 0 Median 2.0755 1.7648 75.243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15170000 7399600 7770500 0 0 0 0 0 0 12801000 6325900 6475300 2368900 1073700 1295200 0 0 0 0 0 0 11025 4430 11474 55383;55384;55385 55520;55521;55522 55520 3 GGGVTNLLWSPDGSK WDVSTETCVPLPWFRGGGVTNLLWSPDGSK GGGVTNLLWSPDGSKILATTPSAVFRVWEA R G G S K I 0 0 1 1 0 0 0 4 0 0 2 1 0 0 1 2 1 1 0 1 0 0 15 0 1486.7416 Q9NRG9;F8VZ44;H3BU82;F8VUB6 Q9NRG9 287 301 AAAS Aladin yes no 2 6.9994E-13 98.353 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11026 4082 11475 55386 55523 55523 1 GGHDILVR DNKNTHTLLLAGVFRGGHDILVRSRLLLLD LLAGVFRGGHDILVRSRLLLLDTVTMQVTA R G G V R S 0 1 0 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 865.477 Q9Y678;H0Y8X7 Q9Y678 836 843 COPG1 Coatomer subunit gamma-1 yes no 2 0.026777 41.652 By matching By MS/MS By matching By matching 1 1 1 1 1.0569 0.98875 50.271 4 Median 1.0584 1.069 NaN 1 0 Median 1.0554 0.91455 NaN 1 0 Median 2.2228 2.3715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89089 0.75549 NaN 1 0 Median 4772600 2165500 2607100 397910 168040 229870 3809800 1802600 2007200 428060 127070 300990 0 0 0 0 0 0 136910 67813 69099 11027 4481 11476 55387;55388;55389;55390 55524 55524 1 GGHFAAFEEPELLAQDIR RFKYPKLISYSYMVRGGHFAAFEEPELLAQ FAAFEEPELLAQDIRKFLSVLERQ______ R G G I R K 3 1 0 1 0 1 3 2 1 1 2 0 0 2 1 0 0 0 0 0 0 0 18 0 1998.9799 P07099 P07099 429 446 EPHX1 Epoxide hydrolase 1 yes yes 3 1.3352E-06 76.151 By MS/MS By MS/MS By matching 1 2 1 0.94768 0.86898 8.8737 4 Median 0.84488 0.84299 NaN 1 0 Median 0.97711 0.84256 8.6609 2 0 Median 0.97296 0.97577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8201300 4129400 4071800 2603400 1239600 1363800 3981900 2027300 1954600 1615900 862550 753390 0 0 0 0 0 0 0 0 0 11028 1879 11477 55391;55392;55393;55394 55525;55526;55527;55528 55527 4 GGHFYSAKPEILR LLKPYTGSKSKEAQKGGHFYSAKPEILRAM QKGGHFYSAKPEILRAMQRADEALNKDKIK K G G L R A 1 1 0 0 0 0 1 2 1 1 1 1 0 1 1 1 0 0 1 0 0 0 13 1 1473.7728 P52701;A0A494C0M1;A0A087WWJ1;C9JH55;C9J8Y8;C9J7Y7 P52701 162 174 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 2.5283E-07 155.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 6 0.87241 0.90972 24.901 12 Median 0.96183 0.9633 6.8267 2 0 Median 1.1468 1.0824 14.161 2 1 Median 0.75233 0.85328 7.791 2 0 Median 0.7473 0.71911 26.508 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116820000 61509000 55311000 39332000 19169000 20163000 8011100 3700000 4311000 48710000 29169000 19541000 20767000 9470400 11297000 0 0 0 0 0 0 11029 2453 11478 55395;55396;55397;55398;55399;55400;55401;55402;55403;55404;55405;55406 55529;55530;55531;55532;55533;55534;55535;55536;55537;55538;55539 55530 11 GGHMDDGGYSMNFNMSSSR GGRGGSGGTRGPPSRGGHMDDGGYSMNFNM DDGGYSMNFNMSSSRGPLPVKRGPPPRSGG R G G S R G 0 1 2 2 0 0 0 4 1 0 0 0 3 1 0 4 0 0 1 0 0 0 19 0 2048.7775 P38159;H3BT71;H0Y6E7;Q96E39;A0A1B0GUK8 P38159 126 144 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 1.4233E-99 262.64 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 7 7 21 11 1.0918 1.0841 17.959 48 Median 1.0607 1.0539 NaN 1 0 Median 1.2132 1.0614 29.433 2 0 Median 0.97029 0.99563 24.873 6 0 Median 1.4253 1.2276 12.073 7 1 Median 1.0161 1.0078 13.29 21 1 Median 1.367 1.1791 20.244 11 0 Median 504300000 238250000 266050000 1623100 733890 889180 602950 250060 352890 55277000 27935000 27342000 54633000 22643000 31991000 378830000 181450000 197380000 13334000 5234200 8100200 11030 2273;3632 11479;11480;11481;11482 55407;55408;55409;55410;55411;55412;55413;55414;55415;55416;55417;55418;55419;55420;55421;55422;55423;55424;55425;55426;55427;55428;55429;55430;55431;55432;55433;55434;55435;55436;55437;55438;55439;55440;55441;55442;55443;55444;55445;55446;55447;55448;55449;55450;55451;55452;55453;55454;55455 55540;55541;55542;55543;55544;55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555;55556;55557;55558;55559;55560;55561;55562;55563;55564;55565;55566;55567;55568;55569;55570;55571;55572;55573 55562 1022;1023;1024 34 GGIDNPAITSDQELDDKK GSEEDPLLSPVETWKGGIDNPAITSDQELD DNPAITSDQELDDKKMKKKTHKVKEDKKQK K G G K K M 1 0 1 4 0 1 1 2 0 2 1 2 0 0 1 1 1 0 0 0 0 0 18 1 1914.9171 Q13017;A0A0A0MSK6;H0YK04 Q13017 1209 1226 ARHGAP5 Rho GTPase-activating protein 5 yes no 3 0.0068194 23.562 By MS/MS 1 0.79202 0.74288 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79202 0.74288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2199000 1227800 971140 0 0 0 0 0 0 0 0 0 2199000 1227800 971140 0 0 0 0 0 0 11031 183 11483 55456 55574 55574 1 GGIGASENLENPPK QQSRNPSSAAPVQSRGGIGASENLENPPKM RGGIGASENLENPPKMGEEEALQSQASSGY R G G P K M 1 0 2 0 0 0 2 3 0 1 1 1 0 0 2 1 0 0 0 0 0 0 14 0 1381.6838 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 783 796 SEC16A Protein transport protein Sec16A yes no 2 0.00073518 62.466 By MS/MS 1 0.85088 0.75115 NaN 1 Median NaN NaN NaN 0 0 Median 0.85088 0.75115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1919000 886110 1032900 0 0 0 1919000 886110 1032900 0 0 0 0 0 0 0 0 0 0 0 0 11032 1513 11484 55457 55575 55575 1 GGILDTAIVDR SAEDASCVVTFKGHKGGILDTAIVDRGRNV KGHKGGILDTAIVDRGRNVVSASRDGTARL K G G D R G 1 1 0 2 0 0 0 2 0 2 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1128.6139 Q9BRP4;F5H103;F5H3I1;F5H0C4;F5H3E9;H0YGB1;F5H0F7 Q9BRP4 177 187 PAAF1 Proteasomal ATPase-associated factor 1 yes no 2 0.0034745 72.643 By MS/MS 2 1.2218 1.2125 NaN 1 Median 1.2218 1.2125 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4846800 2230200 2616700 4846800 2230200 2616700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11033 3798 11485 55458;55459 55576;55577 55576 2 GGILITER ETAGDMGKLRQIIQRGGILITERKKADFST LRQIIQRGGILITERKKADFSTKDIYQDLN R G G E R K 0 1 0 0 0 0 1 2 0 2 1 0 0 0 0 0 1 0 0 0 0 0 8 0 857.49707 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 220 227 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0062263 72.138 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0349 0.98286 139.49 4 Median 0.092981 0.06437 NaN 1 0 Median 1.2922 1.1725 NaN 1 0 Median 0.94032 0.99933 NaN 1 0 Median 1.1389 0.96666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17372000 9096400 8275900 2029200 1787100 242140 847740 372050 475690 8508100 4168000 4340100 5987200 2769300 3218000 0 0 0 0 0 0 11034 2324 11486 55460;55461;55462;55463 55578;55579;55580 55580 3 GGILTSTGFYK EMYSEYLSTCSKLARGGILTSTGFYKCLRT KLARGGILTSTGFYKCLRTVFPNHTVKRVE R G G Y K C 0 0 0 0 0 0 0 3 0 1 1 1 0 1 0 1 2 0 1 0 0 0 11 0 1142.5972 Q68CP9;F8WCU9;F8W108 Q68CP9 559 569 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.0021689 54.982 By MS/MS By matching By matching 1 2 1 1.1079 1.1075 23.34 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97298 1.0731 NaN 1 0 Median 1.2986 1.1507 0.95266 2 0 Median NaN NaN NaN 0 0 Median 0.8208 0.70829 NaN 1 0 Median 14964000 7731000 7233400 0 0 0 0 0 0 13846000 7195600 6650800 754090 338290 415790 0 0 0 363830 197060 166770 11035 3122 11487 55464;55465;55466;55467 55581 55581 1 GGIMLPEK DRVLVERSAAETVTKGGIMLPEKSQGKVLQ AAETVTKGGIMLPEKSQGKVLQATVVAVGS K G G E K S 0 0 0 0 0 0 1 2 0 1 1 1 1 0 1 0 0 0 0 0 0 0 8 0 843.45242 S4R3N1;P61604;B8ZZL8 P61604 29 36 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2 0.0079875 69.176 By MS/MS By MS/MS By MS/MS 2 3 1 1.1584 0.95656 9.7791 5 Median 0.9786 0.88348 13.798 2 0 Median 1.2133 0.99965 6.2318 2 0 Median NaN NaN NaN 0 0 Median 1.1724 0.94851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118670000 55044000 63624000 90828000 43210000 47617000 24509000 10415000 14095000 0 0 0 3330700 1418400 1912300 0 0 0 0 0 0 11036 2560;4561 11488;11489 55468;55469;55470;55471;55472;55473 55582;55583;55584;55585;55586;55587;55588;55589;55590 55586 1236 9 GGIMLPEKSQGK DRVLVERSAAETVTKGGIMLPEKSQGKVLQ VTKGGIMLPEKSQGKVLQATVVAVGSGSKG K G G G K V 0 0 0 0 0 1 1 3 0 1 1 2 1 0 1 1 0 0 0 0 0 0 12 1 1243.6595 S4R3N1;P61604;B8ZZL8 P61604 29 40 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 3 0.00996 27.862 By MS/MS By matching 1 1 0.64106 0.5829 75.127 2 Median 1.0588 0.99153 NaN 1 0 Median 0.38813 0.34268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5164900 2570700 2594200 4348300 2089900 2258400 816610 480790 335820 0 0 0 0 0 0 0 0 0 0 0 0 11037 2560;4561 11490 55474;55475 55591 55591 1 GGITQPNINDSLEITK PPKIPNRKTKSKTNKGGITQPNINDSLEIT GITQPNINDSLEITKLDSSIISEGKISTIT K G G T K L 0 0 2 1 0 1 1 2 0 3 1 1 0 0 1 1 2 0 0 0 0 0 16 0 1698.8788 G5EA36;I3L328 G5EA36 416 431 CDC27 no no 2 2.8373E-07 96.745 By MS/MS By matching 2 2 0.91542 0.91067 17.085 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86093 0.91067 0.024565 2 0 Median 1.1569 1.0032 27.966 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20527000 9125800 11401000 0 0 0 0 0 0 18861000 8338000 10523000 1666300 787820 878530 0 0 0 0 0 0 11038 1135 11491 55476;55477;55478;55479 55592;55593 55592 2 GGIVDEGALLR FAQCKKGVRVVNCARGGIVDEGALLRALQS NCARGGIVDEGALLRALQSGQCAGAALDVF R G G L R A 1 1 0 1 0 0 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1098.6033 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YF78 A0A286YF22 237 247 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.00016115 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 1 1 1.0254 1.0192 16.724 9 Median 0.99737 0.92356 NaN 1 0 Median 1.166 0.98709 18.695 4 0 Median 0.94288 1.0192 9.1336 3 1 Median 1.5833 1.3597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123370000 58409000 64964000 80285000 38974000 41310000 25213000 10730000 14483000 15440000 7716700 7722900 2434900 987870 1447000 0 0 0 0 0 0 11039 351 11492 55480;55481;55482;55483;55484;55485;55486;55487;55488;55489 55594;55595;55596;55597;55598;55599;55600;55601 55595 8 GGIVGMTLPIAR AFEGQVGQAAYSASKGGIVGMTLPIARDLA ASKGGIVGMTLPIARDLAPIGIRVMTIAPG K G G A R D 1 1 0 0 0 0 0 3 0 2 1 0 1 0 1 0 1 0 0 1 0 0 12 0 1183.6747 Q99714 Q99714 173 184 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 0.0006333 64.04 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 2 1 1.1811 1.1292 32.568 11 Median 1.115 1.0609 23.552 2 1 Median 1.2337 1.0296 25.805 4 0 Median 1.0845 1.042 12.094 2 0 Median 0.83583 0.7145 64.774 2 0 Median 1.4696 1.4454 NaN 1 0 Median NaN NaN NaN 0 0 Median 167650000 78815000 88835000 137040000 63865000 73175000 3899800 1995800 1904000 22707000 11210000 11497000 1773800 761580 1012200 2229400 982200 1247200 0 0 0 11040 3764 11493;11494 55490;55491;55492;55493;55494;55495;55496;55497;55498;55499;55500 55602;55603;55604;55605;55606;55607;55608 55603 1822 7 GGKDVAIEIEER ELQRLMAEIQDLKSRGGKDVAIEIEERRIQ KSRGGKDVAIEIEERRIQSCVHFMTLKKLN R G G E R R 1 1 0 1 0 0 3 2 0 2 0 1 0 0 0 0 0 0 0 1 0 0 12 1 1314.6779 Q13769;F8WCP5;C9JXG5;H7C441;C9JXU6;F5GZF3;C9JCL9 Q13769 76 87 THOC5 THO complex subunit 5 homolog yes no 2;3 0.00078364 63.408 By matching By MS/MS 1 2 1.0239 1.0869 93.773 3 Median NaN NaN NaN 0 0 Median 0.98285 0.92107 NaN 1 0 Median 2.2033 2.3416 108.55 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32947000 4073700 28873000 0 0 0 1239500 496040 743450 31707000 3577600 28130000 0 0 0 0 0 0 0 0 0 11041 2837 11495 55501;55502;55503 55609;55610 55609 2 GGKPEPPAMPQPVPTA PKDEILPTTPISEQKGGKPEPPAMPQPVPT GKPEPPAMPQPVPTA_______________ K G G T A - 2 0 0 0 0 1 1 2 0 0 0 1 1 0 6 0 1 0 0 1 0 0 16 1 1572.797 P23396;E9PL09;E9PPU1;H0YEU2 P23396 228 243 RPS3 40S ribosomal protein S3 yes no 2 5.0909E-09 100.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 6 2 2 2 1 0.51898 0.45908 27.117 16 Median 0.44432 0.40315 8.8866 3 0 Median 0.57592 0.48765 41.614 6 0 Median 0.4952 0.47076 14.073 2 0 Median 0.56797 0.47691 14.148 2 0 Median 0.48175 0.4912 11.734 2 0 Median 0.58682 0.49344 NaN 1 0 Median 545280000 365880000 179400000 348360000 241540000 106810000 95131000 59913000 35218000 55310000 34346000 20964000 13742000 8220600 5521500 31822000 21322000 10500000 915170 532820 382350 11042 2112 11496;11497 55504;55505;55506;55507;55508;55509;55510;55511;55512;55513;55514;55515;55516;55517;55518;55519 55611;55612;55613;55614;55615;55616;55617;55618;55619;55620;55621;55622;55623;55624;55625;55626;55627;55628;55629;55630;55631;55632;55633;55634;55635;55636;55637;55638;55639;55640;55641;55642;55643;55644;55645;55646;55647 55616 881 37 GGKPGLTIQAPQLEVSVPSANIEGLEGK AGLRVSAPEVSVGHKGGKPGLTIQAPQLEV EVSVPSANIEGLEGKLKGPQITGPSLEGDL K G G G K L 2 0 1 0 0 2 3 5 0 2 3 2 0 0 3 2 1 0 0 2 0 0 28 1 2788.4971 Q09666 Q09666 342 369 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00060493 26.659 By matching By MS/MS By matching 2 4 2 0.68611 0.70526 19.806 8 Median 0.70991 0.76136 18.297 2 0 Median 0.77873 0.74915 22.42 4 0 Median 0.52773 0.60171 18.057 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16868000 9316500 7551700 4431100 2564500 1866600 10501000 5572400 4929000 1935700 1179500 756130 0 0 0 0 0 0 0 0 0 11043 2749 11498 55520;55521;55522;55523;55524;55525;55526;55527 55648;55649 55648 2 GGLFTALEK ALIVHCVDDSGHWGRGGLFTALEKRSAEPR SGHWGRGGLFTALEKRSAEPRKIYELAGKM R G G E K R 1 0 0 0 0 0 1 2 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 0 934.51238 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 749 757 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.0022552 73.26 By MS/MS By matching By matching 1 1 1 1.3431 1.1247 35.148 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91201 1.0043 NaN 1 0 Median 1.3431 1.1247 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2277 1.9381 NaN 1 0 Median 6808200 3436300 3371900 0 0 0 0 0 0 5693000 3026600 2666300 991650 370150 621500 0 0 0 123580 39524 84060 11044 3293 11499 55528;55529;55530 55650;55651 55651 2 GGLGLILKR YIENKEEKTPLQVAKGGLGLILKRMVEG__ PLQVAKGGLGLILKRMVEG___________ K G G K R M 0 1 0 0 0 0 0 3 0 1 3 1 0 0 0 0 0 0 0 0 0 0 9 1 925.60729 B1AJY5;B1AJY7;O75832 B1AJY5 173 181 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 2 0.00089935 108.24 By MS/MS By MS/MS By matching 2 1 1 1.2553 1.2993 17.823 4 Median 1.0944 1.1071 23.553 2 0 Median 1.5075 1.3941 NaN 1 0 Median 1.2576 1.2909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27202000 11044000 16159000 16496000 6948800 9547000 8964000 3501900 5462100 1742700 593110 1149600 0 0 0 0 0 0 0 0 0 11045 564 11500 55531;55532;55533;55534 55652;55653;55654 55654 3 GGLGVSSSTDGTMK RIHTKSITCLDISSRGGLGVSSSTDGTMKI RGGLGVSSSTDGTMKIWQASNGELRRVLEG R G G M K I 0 0 0 1 0 0 0 4 0 0 1 1 1 0 0 3 2 0 0 1 0 0 14 0 1295.6027 Q9BRP4;F5H103;F5H3I1;F5H0C4;F5H5D4 Q9BRP4 104 117 PAAF1 Proteasomal ATPase-associated factor 1 yes no 2 0.00081363 59.542 By MS/MS By MS/MS 1 1 1.4584 1.3116 7.7268 2 Median 1.324 1.2419 NaN 1 0 Median 1.6065 1.3853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5681300 2328300 3353000 3125400 1242800 1882500 2555900 1085400 1470500 0 0 0 0 0 0 0 0 0 0 0 0 11046 3798 11501 55535;55536 55655;55656;55657 55656 3 GGLGYVEETSEFEAR FLRSDLIEVATRLQKGGLGYVEETSEFEAR GGLGYVEETSEFEARVISLEKLKDFGECVI K G G A R V 1 1 0 0 0 0 4 3 0 0 1 0 0 1 0 1 1 0 1 1 0 0 15 0 1642.7475 Q9UIG0 Q9UIG0 1069 1083 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 3.3282E-10 110.86 By matching By MS/MS By matching 2 2 2 0.97145 0.9609 16.508 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0219 1.1394 30.583 2 0 Median NaN NaN NaN 0 0 Median 0.88868 0.93386 2.188 2 1 Median 1.1119 0.99531 3.1269 2 0 Median 15420000 8025300 7394600 0 0 0 0 0 0 5947600 2851500 3096100 0 0 0 8502000 4720700 3781200 970290 453060 517230 11047 4290 11502 55537;55538;55539;55540;55541;55542 55658;55659;55660 55658 3 GGLKGSEVGFHGAAPDISVK NVKLPTGQISGPEIKGGLKGSEVGFHGAAP SEVGFHGAAPDISVKGPAFNMASPESDFGI K G G V K G 2 0 0 1 0 0 1 5 1 1 1 2 0 1 1 2 0 0 0 2 0 0 20 1 1925.0007 Q09666 Q09666 5525 5544 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 4 6.1683E-05 54.223 By MS/MS 1 2.5569 2.7841 NaN 1 Median 2.5569 2.7841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20545000 5267700 15277000 20545000 5267700 15277000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11048 2749 11503 55543 55661 55661 1 GGLLTSEEDSGFSTSPK CHENHDKKLNRCAIKGGLLTSEEDSGFSTS LLTSEEDSGFSTSPKDNSLPKKKRQKTEKK K G G P K D 0 0 0 1 0 0 2 3 0 0 2 1 0 1 1 4 2 0 0 0 0 0 17 0 1710.7948 Q9UQR1 Q9UQR1 292 308 ZNF148 Zinc finger protein 148 yes yes 2 8.4098E-11 107.09 By MS/MS 1 0.79527 0.87254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79527 0.87254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7138500 4452100 2686400 0 0 0 0 0 0 7138500 4452100 2686400 0 0 0 0 0 0 0 0 0 11049 4364 11504 55544 55662 55662 1 GGLMVSEMESHPPSQGPGDGER ______________________________ MESHPPSQGPGDGERRLSGSSLCSGSWVSA R G G E R R 0 1 0 1 0 1 3 5 1 0 1 0 2 0 3 3 0 0 0 1 0 0 22 0 2252.979 O75400;F5H578;H0YG38 O75400 10 31 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 1.8815E-07 48.315 By MS/MS By matching 1 1 0.45663 0.44201 32.543 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50584 0.55637 NaN 1 0 Median 0.4122 0.35115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7769500 5288500 2481000 0 0 0 0 0 0 6112800 4171800 1941000 1656700 1116800 539970 0 0 0 0 0 0 11050 1670 11505 55545;55546 55663 55663 1 GGLNTPLHESDFSGVTPQR AQNLMALTNVDTPLKGGLNTPLHESDFSGV TPLHESDFSGVTPQRQVVQTPNTVLSTPFR K G G Q R Q 0 1 1 1 0 1 1 3 1 0 2 0 0 1 2 2 2 0 0 1 0 0 19 0 2010.9759 Q99459 Q99459 381 399 CDC5L Cell division cycle 5-like protein yes yes 2;3 1.9772E-13 99.891 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 1 0.66916 0.68383 32.307 12 Median 0.80069 0.7746 26.03 2 0 Median NaN NaN NaN 0 0 Median 0.65996 0.87793 39 4 1 Linear 0.90055 0.76392 14.761 3 0 Median 0.72187 0.74127 32.593 2 0 Median 0.45199 0.38722 NaN 1 0 Median 217300000 125120000 92185000 13703000 6459900 7243500 0 0 0 163750000 98201000 65548000 17551000 8810400 8740600 21275000 10924000 10352000 1022300 720990 301350 11051 3745 11506 55547;55548;55549;55550;55551;55552;55553;55554;55555;55556;55557;55558 55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680 55671 17 GGLSTFFEAQDALSAIHQK RQANKKSEGSLAYVKGGLSTFFEAQDALSA TFFEAQDALSAIHQKLEADGTEKVEGSMTQ K G G Q K L 3 0 0 1 0 2 1 2 1 1 2 1 0 2 0 2 1 0 0 0 0 0 19 0 2019.0062 Q96KP1 Q96KP1 207 225 EXOC2 Exocyst complex component 2 yes yes 3 0.021702 15.09 By MS/MS 1 0.85804 0.94321 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85804 0.94321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3567900 1988300 1579600 0 0 0 0 0 0 3567900 1988300 1579600 0 0 0 0 0 0 0 0 0 11052 3695 11507 55559 55681;55682 55682 2 GGLSVAVPGEIR LAFASMFNSSEQSQKGGLSVAVPGEIRGYE SQKGGLSVAVPGEIRGYELAHQRHGRLPWA K G G I R G 1 1 0 0 0 0 1 3 0 1 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1153.6455 B5MCK8;A6NGU5;P36268;P19440;E7ETR7;E7ET76 B5MCK8 128 139 GGT2;GGT3P;GGT1 Putative gamma-glutamyltranspeptidase 3;Putative gamma-glutamyltranspeptidase 3 heavy chain;Putative gamma-glutamyltranspeptidase 3 light chain;Inactive gamma-glutamyltranspeptidase 2;Gamma-glutamyltranspeptidase 1;Gamma-glutamyltranspeptidase 1 heavy chain;Gamma-glutamyltranspeptidase 1 light chain yes no 2 0.0048942 42.395 By MS/MS 1 0.74959 0.75184 NaN 1 Median 0.74959 0.75184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2457400 1257100 1200400 2457400 1257100 1200400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11053 515 11508 55560 55683 55683 1 GGLVGTPAPFSIDTK PPDPSKVCAYGPGLKGGLVGTPAPFSIDTK GGLVGTPAPFSIDTKGAGTGGLGLTVEGPC K G G T K G 1 0 0 1 0 0 0 3 0 1 1 1 0 1 2 1 2 0 0 1 0 0 15 0 1458.7718 Q14315 Q14315 1074 1088 FLNC Filamin-C yes yes 2 3.1368E-09 99.215 By MS/MS By matching By matching By MS/MS By matching 2 2 2 2 1 0.92771 0.89504 23.645 9 Median 0.93645 0.92163 4.14 2 1 Median 0.81882 0.72372 0.92772 2 0 Median 1.0108 1.1104 9.6204 2 0 Median 0.78168 0.71886 8.4793 2 0 Median 1.2421 1.3149 NaN 1 0 Median NaN NaN NaN 0 0 Median 77859000 38153000 39706000 53757000 25597000 28160000 13300000 7253900 6046400 7516400 3901700 3614700 1128100 598160 529940 2157200 802620 1354600 0 0 0 11054 2871 11509 55561;55562;55563;55564;55565;55566;55567;55568;55569 55684;55685;55686;55687 55685 4 GGLVSDAYGEDDFSR GEAGIEAVGSAAEEKGGLVSDAYGEDDFSR GGLVSDAYGEDDFSRLGGDEDGYEEEEDEN K G G S R L 1 1 0 3 0 0 1 3 0 0 1 0 0 1 0 2 0 0 1 1 0 0 15 0 1586.6849 J3QQJ0;Q9UHR5;J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3 J3QQJ0 22 36 SAP30BP SAP30-binding protein yes no 2 1.1744E-05 76.533 By MS/MS By matching 2 2 1.1483 1.1342 14.77 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1483 1.1896 1.7524 2 1 Median 1.1254 0.97651 16.183 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15653000 7148600 8504500 0 0 0 0 0 0 13335000 5960500 7374200 2318400 1188100 1130300 0 0 0 0 0 0 11055 1343 11510 55570;55571;55572;55573 55688;55689;55690 55690 3 GGLYIVTEYMAK HSNLVQLLGVIVEEKGGLYIVTEYMAKGSL EEKGGLYIVTEYMAKGSLVDYLRSRGRSVL K G G A K G 1 0 0 0 0 0 1 2 0 1 1 1 1 0 0 0 1 0 2 1 0 0 12 0 1343.6795 P41240 P41240 260 271 CSK Tyrosine-protein kinase CSK yes yes 2 0.06236 41.724 By MS/MS 1 0.95136 0.94 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95136 0.94 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3992900 1958300 2034700 0 0 0 0 0 0 3992900 1958300 2034700 0 0 0 0 0 0 0 0 0 11056 2300 11511 55574 55691 55691 1 GGMALALAVTK GRALRKAIADWYNEKGGMALALAVTKYKQR YNEKGGMALALAVTKYKQRNGWSHKDLLRL K G G T K Y 3 0 0 0 0 0 0 2 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1030.5845 P10155;H0Y9N5 P10155 160 170 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes no 2 0.058821 43.282 By MS/MS 1 0.60269 0.56204 NaN 1 Median 0.60269 0.56204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9054100 6415800 2638300 9054100 6415800 2638300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11057 1934 11512 55575 55692 55692 1 GGMGSGGLATGIAGGLAGMGGIQNEK GSGSRISVSRSTSFRGGMGSGGLATGIAGG IAGGLAGMGGIQNEKETMQSLNDRLASYLD R G G E K E 3 0 1 0 0 1 1 11 0 2 2 1 2 0 0 1 1 0 0 0 0 0 26 0 2260.094 P05783;F8VZY9 P05783 56 81 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 2.7833E-49 166.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 3 11 9 15 8 1.2594 1.2055 20.485 55 Median 1.2317 1.1739 19.757 9 0 Median 1.2778 1.0915 22.141 3 0 Median 1.2569 1.2101 18.599 11 0 Median 1.1905 1.0572 8.7452 9 0 Median 1.3401 1.3324 14.298 15 0 Median 1.1959 1.0022 27.154 8 0 Median 474140000 200920000 273220000 46828000 19297000 27531000 5509000 2289500 3219500 336510000 143470000 193040000 26715000 11706000 15009000 52509000 21424000 31085000 6069500 2734100 3335400 11058 1869 11513;11514;11515 55576;55577;55578;55579;55580;55581;55582;55583;55584;55585;55586;55587;55588;55589;55590;55591;55592;55593;55594;55595;55596;55597;55598;55599;55600;55601;55602;55603;55604;55605;55606;55607;55608;55609;55610;55611;55612;55613;55614;55615;55616;55617;55618;55619;55620;55621;55622;55623;55624;55625;55626;55627;55628;55629;55630 55693;55694;55695;55696;55697;55698;55699;55700;55701;55702;55703;55704;55705;55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716;55717;55718;55719;55720;55721;55722;55723;55724;55725;55726;55727;55728 55699 621;622 36 GGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR GSGSRISVSRSTSFRGGMGSGGLATGIAGG GIQNEKETMQSLNDRLASYLDRVRSLETEN R G G D R L 3 1 2 1 0 2 2 11 0 2 3 1 3 0 0 2 2 0 0 0 0 0 35 1 3334.5704 P05783;F8VZY9 P05783 56 90 KRT18 Keratin, type I cytoskeletal 18 yes no 3;4 1.4525E-78 131.03 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 5 9 1 1.158 1.164 13.187 25 Median 1.0564 1.0545 8.9774 4 0 Median NaN NaN NaN 0 0 Median 1.1223 1.1611 4.7482 6 0 Median 1.2064 1.0988 7.3812 5 0 Median 1.282 1.3124 17.054 9 1 Median 1.1954 1.106 NaN 1 0 Median 267830000 115580000 152240000 35076000 15668000 19407000 0 0 0 126010000 56093000 69913000 11205000 4820200 6384900 95380000 38922000 56459000 161190 81114 80073 11059 1869 11516;11517;11518 55631;55632;55633;55634;55635;55636;55637;55638;55639;55640;55641;55642;55643;55644;55645;55646;55647;55648;55649;55650;55651;55652;55653;55654;55655 55729;55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740;55741;55742;55743;55744;55745;55746;55747;55748;55749;55750;55751;55752 55741 620;621;622 24 GGMIVDPLR FVVGGEDLDPFGPRRGGMIVDPLRSGFPRA PFGPRRGGMIVDPLRSGFPRALIDPSSGLP R G G L R S 0 1 0 1 0 0 0 2 0 1 1 0 1 0 1 0 0 0 0 1 0 0 9 0 956.51134 Q5QPM7;Q92530;H0Y555;F5H4Z3 Q5QPM7 206 214 PSMF1 Proteasome inhibitor PI31 subunit yes no 2 0.031814 35.88 By MS/MS By matching 1 1 0.83214 0.75542 17.302 2 Median 0.69633 0.66842 NaN 1 0 Median 0.99443 0.85373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3552000 2161300 1390600 3033300 1947000 1086300 518650 214280 304370 0 0 0 0 0 0 0 0 0 0 0 0 11060 3069 11519 55656;55657 55753;55754 55754 2 GGNFGFGDSR SRQEMQEVQSSRSGRGGNFGFGDSRGGGGN SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR R G G S R G 0 1 1 1 0 0 0 4 0 0 0 0 0 2 0 1 0 0 0 0 0 0 10 0 1012.4363 P22626 P22626 204 213 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 2.4396E-05 145.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 11 12 1.2332 1.0636 10.393 36 Median 1.3847 1.3515 22.33 2 0 Median 1.3346 1.1099 3.6245 3 0 Median 1.042 1.0217 6.265 4 1 Median 1.3672 1.1724 6.2166 4 0 Median 1.0207 1.04 8.1702 11 0 Median 1.2919 1.0368 8.1957 12 0 Median 2075500000 955770000 1119700000 18787000 7139300 11648000 53510000 23086000 30424000 233330000 107990000 125340000 103130000 43450000 59682000 1482000000 695800000 786210000 184710000 78302000 106410000 11061 2103 11520 55658;55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680;55681;55682;55683;55684;55685;55686;55687;55688;55689;55690;55691;55692;55693 55755;55756;55757;55758;55759;55760;55761;55762;55763;55764;55765;55766;55767;55768;55769;55770;55771;55772;55773;55774;55775;55776;55777;55778;55779;55780;55781;55782;55783;55784;55785;55786;55787;55788;55789;55790;55791;55792;55793;55794;55795;55796;55797;55798;55799;55800;55801;55802;55803;55804;55805;55806;55807 55757 53 GGNFGFGDSRGGGGNFGPGPGSNFR SRQEMQEVQSSRSGRGGNFGFGDSRGGGGN GGGGNFGPGPGSNFRGGSDGYGSGRGFGDG R G G F R G 0 2 3 1 0 0 0 11 0 0 0 0 0 4 2 2 0 0 0 0 0 0 25 1 2371.0479 P22626 P22626 204 228 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 3 2.5461E-07 56.766 By MS/MS 1 0.77557 0.82782 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77557 0.82782 NaN 1 1 Median NaN NaN NaN 0 0 Median 16044000 9460700 6583400 0 0 0 0 0 0 0 0 0 0 0 0 16044000 9460700 6583400 0 0 0 11062 2103 11521 55694 55808 55808 1 GGNIGDGGGAADR CVLFFDELDSIAKARGGNIGDGGGAADRVI ARGGNIGDGGGAADRVINQILTEMDGMSTK R G G D R V 2 1 1 2 0 0 0 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 13 0 1115.4956 P55072 P55072 587 599 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0010284 60.518 By MS/MS By MS/MS 2 1 1.2037 1.0574 2.238 3 Plateau 1.0708 1.0727 2.9393 2 0 Median 1.2108 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2865500 1265300 1600200 1085400 524390 561030 1780000 740860 1039200 0 0 0 0 0 0 0 0 0 0 0 0 11063 2494 11522 55695;55696;55697 55809;55810;55811 55810 3 GGNRFEPYANPTK RPAQNEKRKEKNIKRGGNRFEPYANPTKRY KRGGNRFEPYANPTKRYRAFITNIPFDVKW R G G T K R 1 1 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 13 1 1449.7001 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 57 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 8.7701E-06 117.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 3 1 0.73554 0.67905 27.424 15 Median NaN NaN NaN 0 0 Median 0.73816 0.67572 0.69484 2 2 Median 0.58236 0.61868 30.921 4 0 Median 0.91873 0.84976 26.6 5 0 Median 0.63554 0.69925 36.919 3 0 Median 1.2041 1.0427 NaN 1 0 Median 71821000 41677000 30144000 0 0 0 4263200 2431700 1831600 22121000 13499000 8621800 4738800 2282600 2456200 37058000 21757000 15300000 3640400 1706600 1933700 11064 116 11523 55698;55699;55700;55701;55702;55703;55704;55705;55706;55707;55708;55709;55710;55711;55712 55812;55813;55814;55815;55816;55817;55818;55819;55820;55821;55822;55823;55824;55825;55826;55827 55818 16 GGNRFEPYANPTKR RPAQNEKRKEKNIKRGGNRFEPYANPTKRY RGGNRFEPYANPTKRYRAFITNIPFDVKWQ R G G K R Y 1 2 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 14 2 1605.8012 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 57 70 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3;4 3.9188E-05 90.146 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 7 10 5 0.75783 0.85907 27.549 30 Median 0.99137 1 16.356 3 0 Median 0.95899 1.1588 42.895 2 0 Median 0.62785 0.70436 13.882 3 1 Median 0.85192 0.88494 28.429 7 0 Median 0.59013 0.69418 18 10 2 Median 1.0551 0.91541 12.702 5 1 Median 223420000 136840000 86579000 5632700 2625600 3007100 1762900 1012400 750530 20102000 11285000 8817600 9038000 4710800 4327100 166900000 107740000 59154000 19982000 9459300 10523000 11065 116 11524 55713;55714;55715;55716;55717;55718;55719;55720;55721;55722;55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734;55735;55736;55737;55738;55739;55740;55741;55742 55828;55829;55830;55831;55832;55833;55834;55835;55836;55837;55838;55839;55840;55841;55842;55843;55844;55845;55846;55847;55848;55849;55850;55851;55852 55836 25 GGPASVPSSSPGTSVK SPARGPSGSPRTQGRGGPASVPSSSPGTSV GPASVPSSSPGTSVKKPDPNIKNNAASEGV R G G V K K 1 0 0 0 0 0 0 3 0 0 0 1 0 0 3 5 1 0 0 2 0 0 16 0 1413.71 O43237;J3KRI4;J3KRZ2 O43237 398 413 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 2 0.032329 24.291 By MS/MS By matching By matching 1 1 1 0.68756 0.60323 5.0389 3 Median NaN NaN NaN 0 0 Median 0.68756 0.60323 NaN 1 0 Median 0.57664 0.58106 NaN 1 0 Median 0.7408 0.64201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2664500 1626800 1037700 0 0 0 917310 574540 342770 898590 554830 343760 848560 497420 351140 0 0 0 0 0 0 11066 1559 11525 55743;55744;55745 55853;55854 55854 2 GGPDFSNLEK GFDFSGAEISGNYTKGGPDFSNLEK_____ GNYTKGGPDFSNLEK_______________ K G G E K - 0 0 1 1 0 0 1 2 0 0 1 1 0 1 1 1 0 0 0 0 0 0 10 0 1062.4982 E5RFP0;Q8WVJ2 E5RFP0 123 132 NUDCD2 NudC domain-containing protein 2 yes no 2 0.00043466 74.464 By MS/MS By MS/MS 1 1 0.9318 0.83843 13.336 2 Median 0.8089 0.76298 NaN 1 0 Median 1.0734 0.92134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19587000 10258000 9329000 14848000 8011700 6836000 4739200 2246200 2493000 0 0 0 0 0 0 0 0 0 0 0 0 11067 836 11526 55746;55747 55855;55856;55857;55858 55856 4 GGPEPTPLVQTFLR PLPPELQPLLEGEVKGGPEPTPLVQTFLRR KGGPEPTPLVQTFLRRQQRLQEIERRRNTP K G G L R R 0 1 0 0 0 1 1 2 0 0 2 0 0 1 3 0 2 0 0 1 0 0 14 0 1510.8144 P38435 P38435 648 661 GGCX Vitamin K-dependent gamma-carboxylase yes yes 2 0.00092705 55.314 By MS/MS By matching 1 1 0.55183 0.50591 41.529 2 Median 0.37682 0.37718 NaN 1 0 Median 0.80814 0.67859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7072300 5112900 1959500 5209700 4156700 1053100 1862600 956180 906410 0 0 0 0 0 0 0 0 0 0 0 0 11068 2275 11527 55748;55749 55859;55860 55860 2 GGPEVQQVPAGER TAMPFRGYAVLGGERGGPEVQQVPAGERPL ERGGPEVQQVPAGERPLWFICSGMGTQWRG R G G E R P 1 1 0 0 0 2 2 3 0 0 0 0 0 0 2 0 0 0 0 2 0 0 13 0 1322.6579 P49327;A0A0U1RQF0 P49327 478 490 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00026336 79.148 By MS/MS 1 0.96206 0.79775 NaN 1 Median NaN NaN NaN 0 0 Median 0.96206 0.79775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1353300 685090 668170 0 0 0 1353300 685090 668170 0 0 0 0 0 0 0 0 0 0 0 0 11069 2377 11528 55750 55861 55861 1 GGPGGELPR ANLGRTTLSTRGPPRGGPGGELPRGPQAGL TRGPPRGGPGGELPRGPQAGLGPRRSQQGP R G G P R G 0 1 0 0 0 0 1 4 0 0 1 0 0 0 2 0 0 0 0 0 0 0 9 0 838.42972 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 522 530 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0035603 64.265 By MS/MS By MS/MS 1 1 0.9411 0.86643 38.529 2 Median 1.1363 1.1378 NaN 1 0 Median 0.77943 0.65981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3702000 1868100 1834000 931870 394840 537030 2770100 1473200 1296900 0 0 0 0 0 0 0 0 0 0 0 0 11070 894 11529 55751;55752 55862;55863;55864;55865 55865 4 GGPGGPGGPGGPMGR GLPPREGRGMPPPLRGGPGGPGGPGGPMGR GGPGGPGGPGGPMGRMGGRGGDRGGFPPRG R G G G R M 0 1 0 0 0 0 0 9 0 0 0 0 1 0 4 0 0 0 0 0 0 0 15 0 1206.5564 B0QYK0;Q01844;H7BY36;A0A0D9SFL3;C9JGE3 B0QYK0 434 448 EWSR1 RNA-binding protein EWS yes no 2 0.024293 42.743 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11071 557 11530 55753 55866 55866 1 GGPGSAVSPYPTFNPSSDVAALHK ENEEQEYVQTVKSSKGGPGSAVSPYPTFNP YPTFNPSSDVAALHKAIMVKGVDEATIIDI K G G H K A 3 0 1 1 0 0 0 3 1 0 1 1 0 1 4 4 1 0 1 2 0 0 24 0 2355.1495 P04083;Q5T3N1;Q5T3N0 P04083 30 53 ANXA1 Annexin A1;Annexin yes no 2;3 1.6085E-48 188.12 By MS/MS By matching By MS/MS By matching By MS/MS 6 2 2 1 1 0.67508 0.62683 18.568 12 Median 0.63143 0.62683 21.545 6 2 Median 0.64609 0.54623 4.6599 2 0 Median 0.6833 0.69039 4.173 2 0 Median 0.69973 0.5964 NaN 1 0 Median 0.84239 0.83817 NaN 1 0 Median NaN NaN NaN 0 0 Median 251950000 152120000 99829000 160480000 100140000 60343000 36723000 21617000 15106000 49339000 27548000 21791000 918070 516570 401500 4483500 2296800 2186700 0 0 0 11072 1844 11531 55754;55755;55756;55757;55758;55759;55760;55761;55762;55763;55764;55765 55867;55868;55869;55870;55871;55872;55873;55874;55875 55867 9 GGPGSTLSFVGK DQSAAAAGPGDPKRKGGPGSTLSFVGKRRG KRKGGPGSTLSFVGKRRGGNKLALKTGIVA K G G G K R 0 0 0 0 0 0 0 4 0 0 1 1 0 1 1 2 1 0 0 1 0 0 12 0 1105.5768 Q9BQ61 Q9BQ61 107 118 C19orf43 Uncharacterized protein C19orf43 yes yes 2 0.00059794 71.349 By MS/MS By MS/MS 1 1 0.91004 0.80179 6.2095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81857 0.76735 NaN 1 0 Median 1.0117 0.83778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19383000 10138000 9244800 0 0 0 0 0 0 16967000 8831600 8135500 2416100 1306800 1109300 0 0 0 0 0 0 11073 3783 11532 55766;55767 55876;55877;55878 55876 3 GGPGSTLSFVGKR DQSAAAAGPGDPKRKGGPGSTLSFVGKRRG RKGGPGSTLSFVGKRRGGNKLALKTGIVAK K G G K R R 0 1 0 0 0 0 0 4 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 1 1261.6779 Q9BQ61 Q9BQ61 107 119 C19orf43 Uncharacterized protein C19orf43 yes yes 2 0.048885 39.148 By MS/MS 1 0.94693 0.98112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94693 0.98112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4796400 2645900 2150500 0 0 0 0 0 0 4796400 2645900 2150500 0 0 0 0 0 0 0 0 0 11074 3783 11533 55768 55879 55879 1 GGPISFSSSR GLSREVSTLKNRLRRGGPISFSSSRSGRRQ NRLRRGGPISFSSSRSGRRQLHLEGASLEL R G G S R S 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 4 0 0 0 0 0 0 10 0 993.48796 P35580 P35580 1931 1940 MYH10 Myosin-10 yes yes 2 0.028949 49.418 By MS/MS By MS/MS 1 1 1.5563 1.7076 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5563 1.7076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6909100 1559800 5349300 0 0 0 0 0 0 6909100 1559800 5349300 0 0 0 0 0 0 0 0 0 11075 2245 11534 55769;55770 55880;55881 55880 2 GGPLQALTR QAGITETEWTSGSSKGGPLQALTRESTRGS TSGSSKGGPLQALTRESTRGSRRTPRKRVE K G G T R E 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 911.51886 P42167 P42167 240 248 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 0.00060254 110.31 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 1.2383 1.1417 23.968 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98735 0.97809 16.273 4 0 Median 1.5609 1.278 23.131 5 0 Median 0.82546 0.82095 NaN 1 0 Median 1.3601 1.1448 3.9104 2 0 Median 105130000 51383000 53747000 0 0 0 0 0 0 44105000 24287000 19818000 15696000 5213300 10483000 27255000 14588000 12667000 18074000 7295000 10779000 11076 2307 11535 55771;55772;55773;55774;55775;55776;55777;55778;55779;55780;55781;55782 55882;55883;55884;55885;55886;55887;55888;55889;55890;55891;55892;55893;55894;55895;55896 55884 13 GGPNIITLADIVK KKKIKREIKILENLRGGPNIITLADIVKDP LRGGPNIITLADIVKDPVSRTPALVFEHVN R G G V K D 1 0 1 1 0 0 0 2 0 3 1 1 0 0 1 0 1 0 0 1 0 0 13 0 1309.7606 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1;A0A2R8YCK2 P68400 90 102 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 3.3165E-05 91.855 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 2 1.0146 0.86564 11.364 7 Median NaN NaN NaN 0 0 Median 1.0161 0.86564 NaN 1 0 Median 0.93513 0.96606 NaN 1 0 Median 1.0312 0.89499 4.864 2 0 Median 0.8873 0.8781 NaN 1 0 Median 0.91066 0.75581 15.732 2 0 Median 40023000 20106000 19917000 0 0 0 20002000 9939400 10063000 15356000 7854700 7501000 2112000 1039100 1072900 294440 167440 127000 2258300 1105000 1153300 11077 394 11536 55783;55784;55785;55786;55787;55788;55789 55897;55898;55899;55900 55897 4 GGPNIITLADIVKDPVSR KKKIKREIKILENLRGGPNIITLADIVKDP NIITLADIVKDPVSRTPALVFEHVNNTDFK R G G S R T 1 1 1 2 0 0 0 2 0 3 1 1 0 0 2 1 1 0 0 2 0 0 18 1 1864.0418 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1 P68400 90 107 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 4.9826E-05 53.967 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 3 2 2 2 0.85192 0.85237 11.442 12 Median 0.86352 0.92513 5.2853 2 0 Median 0.74425 0.69412 NaN 1 0 Median 0.78828 0.89671 7.6488 3 0 Median 0.86631 0.75629 2.0968 2 0 Median 0.88182 0.93322 1.0703 2 0 Median 0.84075 0.76561 8.8807 2 0 Median 50534000 27030000 23504000 11410000 5945000 5465100 877170 473900 403270 11282000 6336300 4945700 23196000 12170000 11026000 1419200 746870 672350 2349500 1358000 991440 11078 394 11537 55790;55791;55792;55793;55794;55795;55796;55797;55798;55799;55800;55801 55901;55902;55903;55904;55905;55906;55907 55907 7 GGPNYQEGLR QGPLKEHEVTIFVRRGGPNYQEGLRVMGEV IFVRRGGPNYQEGLRVMGEVGKTTGIPIHV R G G L R V 0 1 1 0 0 1 1 3 0 0 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1089.5203 P53396;K7EIE7 P53396 380 389 ACLY ATP-citrate synthase yes no 2 0.007999 60.436 By MS/MS 1 0.25472 0.21118 NaN 1 Median NaN NaN NaN 0 0 Median 0.25472 0.21118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25193000 18223000 6970100 0 0 0 25193000 18223000 6970100 0 0 0 0 0 0 0 0 0 0 0 0 11079 2467 11538 55802 55908 55908 1 GGPPFAFVEFEDPR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD R G G P R D 1 1 0 1 0 0 2 2 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1563.7358 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 52 65 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 5.1659E-06 94.297 By matching By MS/MS By matching By matching 1 1 1 3 0.84368 0.70868 27.37 6 Median NaN NaN NaN 0 0 Median 1.5637 1.3381 NaN 1 0 Median 0.63864 0.62208 NaN 1 0 Median 0.82657 0.69421 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86115 0.70884 6.3091 3 0 Median 14763000 8633100 6130100 0 0 0 617060 248760 368290 12415000 7473200 4942000 436980 224050 212930 0 0 0 1293800 687000 606830 11080 1337 11539 55803;55804;55805;55806;55807;55808 55909;55910;55911;55912 55912 4 GGPPGPPISR IKVQQLMAKGSDKRRGGPPGPPISRGLPLV SDKRRGGPPGPPISRGLPLVDDGGWNTVPI R G G S R G 0 1 0 0 0 0 0 3 0 1 0 0 0 0 4 1 0 0 0 0 0 0 10 0 933.50321 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 870 879 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.00039409 78.516 By MS/MS 3 1.762 1.5289 65.028 3 Plateau NaN NaN NaN 0 0 Median 1.762 1.5289 65.028 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7456600 3614800 3841800 0 0 0 7456600 3614800 3841800 0 0 0 0 0 0 0 0 0 0 0 0 11081 894 11540 55809;55810;55811 55913;55914;55915 55914 3 GGPPGQFHDNANGGQNGTVQEIMIPAGK QKAKMMLDDIVSRGRGGPPGQFHDNANGGQ GQNGTVQEIMIPAGKAGLVIGKGGETIKQL R G G G K A 2 0 3 1 0 3 1 7 1 2 0 1 1 1 3 0 1 0 0 1 0 0 28 0 2790.3144 Q92945;A0A087WTP3;M0R0I5;M0QYH3;M0QXW7 Q92945 217 244 KHSRP Far upstream element-binding protein 2 yes no 3 1.6103E-20 64.377 By MS/MS By MS/MS 2 2 0.63699 0.61594 13.146 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54415 0.57538 13.511 2 1 Median 0.76032 0.65604 12.798 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42081000 25812000 16269000 0 0 0 0 0 0 36971000 22898000 14072000 5110200 2913500 2196700 0 0 0 0 0 0 11082 3568 11541 55812;55813;55814;55815 55916;55917;55918;55919;55920 55918 5 GGPSPGDVEAIK KTFNPGAGLPTDKKKGGPSPGDVEAIKNAI KKKGGPSPGDVEAIKNAIANASTLAEVERL K G G I K N 1 0 0 1 0 0 1 3 0 1 0 1 0 0 2 1 0 0 0 1 0 0 12 0 1125.5666 P09661;H0YMA0;H0YLR3 P09661 194 205 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.0033295 46.406 By MS/MS By matching By MS/MS 1 1 1 0.85304 0.80001 68.31 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85304 0.80001 NaN 1 0 Median 0.24739 0.22278 NaN 1 0 Median 0.62824 0.64075 NaN 1 0 Median NaN NaN NaN 0 0 Median 51077000 25192000 25885000 0 0 0 0 0 0 32109000 12892000 19217000 3876300 3188600 687740 15092000 9111200 5980600 0 0 0 11083 1920 11542 55816;55817;55818 55921;55922;55923;55924;55925 55925 5 GGPTPQEAIQR VFGKLFGAGGGKAGKGGPTPQEAIQRLRDT KAGKGGPTPQEAIQRLRDTEEMLSKKQEFL K G G Q R L 1 1 0 0 0 2 1 2 0 1 0 0 0 0 2 0 1 0 0 0 0 0 11 0 1152.5887 Q9H444 Q9H444 18 28 CHMP4B Charged multivesicular body protein 4b yes yes 2 0.00013669 85.67 By matching By matching By MS/MS By matching 1 1 1 1 1.0675 0.92377 44.668 4 Linear NaN NaN NaN 0 0 Median 1.3541 1.1477 NaN 1 0 Median 0.65038 0.63786 NaN 1 0 Median 0.89809 0.74902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44436 0.38928 NaN 1 0 Median 10169000 5146500 5022500 0 0 0 3824900 1585100 2239800 2464800 1651400 813450 3398800 1638500 1760300 0 0 0 480500 271490 209010 11084 3961 11543 55819;55820;55821;55822 55926;55927;55928 55927 3 GGPTVDPEELFR GFDPGASGSQHSYWKGGPTVDPEELFRKIF YWKGGPTVDPEELFRKIFGEFSSSSFGDFQ K G G F R K 0 1 0 1 0 0 2 2 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1315.6408 Q96EY1 Q96EY1 176 187 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 0.00061844 67.113 By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 1 1 1.0648 0.93557 42.588 7 Median 2.648 2.8676 NaN 1 0 Median 1.0831 0.93557 NaN 1 0 Median 0.93136 1.0109 NaN 1 0 Median 1.0553 0.9309 2.2428 2 0 Median 0.83503 0.8961 NaN 1 0 Median 1.0783 0.90374 NaN 1 0 Median 15817000 8076100 7740500 946040 280250 665790 3128800 1594900 1534000 6766200 3607300 3158800 1452300 713750 738560 1771600 1084800 686870 1751600 795120 956500 11085 3643 11544 55823;55824;55825;55826;55827;55828;55829 55929;55930 55930 2 GGPWEFNLR QIDHEVTVEKKWGQKGGPWEFNLRDLFRWC KKWGQKGGPWEFNLRDLFRWCQLMLVDQSP K G G L R D 0 1 1 0 0 0 1 2 0 0 1 0 0 1 1 0 0 1 0 0 0 0 9 0 1074.5247 Q9NU22 Q9NU22 1941 1949 MDN1 Midasin yes yes 2 0.00085343 94.262 By MS/MS By matching 1 1 1.0432 1.001 7.7833 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99613 1.0576 NaN 1 0 Median 1.0924 0.9474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7595900 3746100 3849800 0 0 0 0 0 0 7290900 3605300 3685700 304980 140840 164140 0 0 0 0 0 0 11086 4112 11545 55830;55831 55931;55932 55931 2 GGQAPGFLLR ______________________________ GATSRGGQAPGFLLRLHTEGRAEAARVQEQ R G G L R L 1 1 0 0 0 1 0 3 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1014.5611 Q86WJ1;A0A0A0MRH8;A0A494C1P7;A0A494C179;A0A087WTM4;A0A494C0J6;A0A494C111;A0A494C1H0;A0A494C0M4;A0A494C1I3;A0A494C0B8;A0A494C0Q0;A0A494C1S1;A0A087WWW4;A0A494C1H1;A0A087WZM7;A0A494C1F3 Q86WJ1 10 19 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00041485 75.854 By MS/MS 1 0.74983 0.79924 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74983 0.79924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5968900 3409200 2559700 0 0 0 0 0 0 5968900 3409200 2559700 0 0 0 0 0 0 0 0 0 11087 3293 11546 55832 55933;55934 55933 2 GGQEDMNLSLQSR FGSQASSAPSMTSSKGGQEDMNLSLQSRPS SKGGQEDMNLSLQSRPSSLPDLSGSIDDLP K G G S R P 0 1 1 1 0 2 1 2 0 0 2 0 1 0 0 2 0 0 0 0 0 0 13 0 1433.6569 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 623 635 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 7.4281E-23 164.64 By MS/MS 1 1.0117 1.1036 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0117 1.1036 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11586000 5603100 5982900 0 0 0 0 0 0 11586000 5603100 5982900 0 0 0 0 0 0 0 0 0 11088 1480 11547 55833 55935 55935 1 GGQIGLQAPGLSVSGPQGHLESGSGK GGLHFSGPKVEGGVKGGQIGLQAPGLSVSG SVSGPQGHLESGSGKVTFPKMKIPKFTFSG K G G G K V 1 0 0 0 0 3 1 8 1 1 3 1 0 0 2 4 0 0 0 1 0 0 26 0 2417.2299 Q09666 Q09666 5630 5655 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 2.3109E-46 143.29 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 5 8 1.0064 0.94853 26.237 21 Median 0.89758 0.86645 45.953 5 0 Median 1.138 1.0016 37.253 3 0 Median 0.96272 1.0289 13.061 5 1 Median 1.019 0.90514 6.7185 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 234290000 121130000 113170000 91216000 49528000 41687000 13789000 6790800 6998100 99018000 50078000 48940000 30272000 14730000 15542000 0 0 0 0 0 0 11089 2749 11548 55834;55835;55836;55837;55838;55839;55840;55841;55842;55843;55844;55845;55846;55847;55848;55849;55850;55851;55852;55853;55854 55936;55937;55938;55939;55940;55941;55942;55943;55944;55945;55946;55947;55948;55949;55950;55951;55952;55953;55954;55955;55956;55957 55937 22 GGQLLVSLK VSAGGRYVKVWDMLKGGQLLVSLKNHHKTV VWDMLKGGQLLVSLKNHHKTVTCLCLSSSG K G G L K N 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 913.55967 Q8TED0;H0Y8P4 Q8TED0 237 245 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.051585 30.593 By matching By MS/MS By matching 1 1 1 1.3686 1.2702 8.5539 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4614 1.2702 NaN 1 0 Median 1.3686 1.3069 NaN 1 0 Median 1.3144 1.1133 NaN 1 0 Median 4702800 2062800 2639900 0 0 0 0 0 0 0 0 0 697530 304910 392620 2968900 1319700 1649200 1036400 438260 598150 11090 1163 11549 55855;55856;55857 55958 55958 1 GGQTHLGLPVFNTVK LEYGTKLVGGTTPGKGGQTHLGLPVFNTVK GGQTHLGLPVFNTVKEAKEQTGATASVIYV K G G V K E 0 0 1 0 0 1 0 3 1 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1566.8518 P53597;A0A494C0D1 P53597 91 105 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 2 0.00026764 70.089 By MS/MS By matching By matching 1 1 1 1.3657 1.1472 21.768 3 Median 0.88237 0.79878 NaN 1 0 Median 1.3657 1.1472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3928 1.1803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74190000 36687000 37503000 70519000 35161000 35357000 3451800 1404500 2047300 0 0 0 219460 121690 97775 0 0 0 0 0 0 11091 2469 11550 55858;55859;55860 55959;55960;55961 55961 3 GGQVSLTVHGTQQVHSPPEQSPVQANSSSSK PTQRLVVQSAAPGSKGGQVSLTVHGTQQVH PPEQSPVQANSSSSKTAGAPTGTVPQQLQV K G G S K T 1 0 1 0 0 5 1 3 2 0 1 1 0 0 3 7 2 0 0 4 0 0 31 0 3157.5388 P22670 P22670 189 219 RFX1 MHC class II regulatory factor RFX1 yes yes 4 0.021528 20.878 By MS/MS 1 0.65888 0.56102 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65888 0.56102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2284400 1580600 703880 0 0 0 0 0 0 0 0 0 2284400 1580600 703880 0 0 0 0 0 0 11092 2104 11551 55861 55962 55962 1 GGREDMDISK AKPETDKEQDSEMEKGGREDMDISKSAEEP SEMEKGGREDMDISKSAEEPQEKVDLTLDW K G G S K S 0 1 0 2 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1106.5026 P49321;E9PPR5;E9PNB5 P49321 181 190 NASP Nuclear autoantigenic sperm protein yes no 2 0.002872 72.928 By MS/MS 1 1.616 1.5124 NaN 1 Median NaN NaN NaN 0 0 Median 1.616 1.5124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5877900 2199400 3678600 0 0 0 5877900 2199400 3678600 0 0 0 0 0 0 0 0 0 0 0 0 11093 2376 11552 55862 55963;55964 55963 2 GGRGDVGSADIQDLEK SQLPLKVEFLECSAKGGRGDVGSADIQDLE GRGDVGSADIQDLEKWLAKIA_________ K G G E K W 1 1 0 3 0 1 1 4 0 1 1 1 0 0 0 1 0 0 0 1 0 0 16 1 1615.7802 Q9Y5M8;H7C4H2 Q9Y5M8 250 265 SRPRB Signal recognition particle receptor subunit beta yes no 3 2.3327E-05 76.341 By MS/MS 1 1.0758 1.0012 NaN 1 Median NaN NaN NaN 0 0 Median 1.0758 1.0012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3478500 1775400 1703100 0 0 0 3478500 1775400 1703100 0 0 0 0 0 0 0 0 0 0 0 0 11094 4463 11553 55863 55965;55966 55965 2 GGRPNEIEPPPPEMPPWQK ACAINKVLMGRVPDRGGRPNEIEPPPPEMP NEIEPPPPEMPPWQKRQEGGGGRGGWGGGG R G G Q K R 0 1 1 0 0 1 3 2 0 1 0 1 1 0 7 0 0 1 0 0 0 0 19 1 2155.0521 Q8NCA5;Q52LJ0 Q52LJ0 309 327 FAM98A;FAM98B Protein FAM98A;Protein FAM98B no no 3 2.0792E-06 85.362 By MS/MS 2 0.50074 0.47951 25.733 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50074 0.47951 25.733 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14990000 11703000 3287100 0 0 0 0 0 0 0 0 0 14990000 11703000 3287100 0 0 0 0 0 0 11095 3025;3417 11554;11555 55864;55865 55967;55968 55968 1652 1 GGSDDSSKDPIDVNYEK LDNLLDIEVAYSLLRGGSDDSSKDPIDVNY SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA R G G E K L 0 0 1 4 0 0 1 2 0 1 0 2 0 0 1 3 0 0 1 1 0 0 17 1 1824.8014 P09874 P09874 780 796 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 8.3825E-64 237.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 9 11 3 6 1.0597 1.0369 14.47 32 Median 0.802 0.84411 5.7951 2 0 Median 1.3589 1.2646 NaN 1 0 Median 0.86063 0.97714 8.6191 9 0 Median 1.1206 1.1233 11.672 11 0 Median 0.9524 1.0659 18.032 3 0 Median 1.152 1.0315 19.446 6 0 Median 551980000 270630000 281350000 11001000 5963000 5038300 5347700 2575900 2771800 271850000 139260000 132600000 215410000 99258000 116160000 30244000 15150000 15095000 18122000 8429800 9692200 11096 1922 11556 55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883;55884;55885;55886;55887;55888;55889;55890;55891;55892;55893;55894;55895;55896;55897 55969;55970;55971;55972;55973;55974;55975;55976;55977;55978;55979;55980;55981;55982;55983;55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001;56002;56003;56004;56005;56006;56007;56008;56009;56010 55977 42 GGSFENNWNIYK KAMDDKRFDEATQLRGGSFENNWNIYKLLA QLRGGSFENNWNIYKLLAHQKPPKEKSNFS R G G Y K L 0 0 3 0 0 0 1 2 0 1 0 1 0 1 0 1 0 1 1 0 0 0 12 0 1427.647 P17858 P17858 375 386 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.001095 85.731 By MS/MS By matching By matching 3 2 1 1.1776 1.216 23.853 6 Median 1.0574 1.0192 14.887 3 1 Median 1.7397 1.534 27.177 2 0 Median 1.1147 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30190000 13362000 16828000 24977000 11327000 13650000 3418700 1121400 2297300 1793600 912700 880870 0 0 0 0 0 0 0 0 0 11097 2047 11557 55898;55899;55900;55901;55902;55903 56011;56012;56013 56011 3 GGSGGGGGGSSGGRGSGGGSSGGSIGGR GHGSYGSGSSSGGYRGGSGGGGGGSSGGRG RGSGGGSSGGSIGGRGSSSGGVKSSGGSSS R G G G R G 0 2 0 0 0 0 0 18 0 1 0 0 0 0 0 7 0 0 0 0 0 0 28 1 2078.9074 P04264;CON__P04264 P04264 589 616 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.0061218 23.566 By MS/MS 2 0.10342 0.095771 22.264 2 Median NaN NaN NaN 0 0 Median 0.10342 0.095771 22.264 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1764900 1701700 63171 0 0 0 1764900 1701700 63171 0 0 0 0 0 0 0 0 0 0 0 0 + 11098 1848 11558 55904;55905 56014;56015 56014 2 GGSGGGGSISGGGYGSGGGSGGR GSSSYGSGGRQSGSRGGSGGGGSISGGGYG ISGGGYGSGGGSGGRYGSGGGSKGGSISGG R G G G R Y 0 1 0 0 0 0 0 15 0 1 0 0 0 0 0 5 0 0 1 0 0 0 23 0 1740.7412 CON__P35908;CON__P35908v2;P35908 CON__P35908 556 578 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.7965E-56 148.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 12 2 9 4 5 0.053802 0.044218 62.881 2 Median NaN NaN NaN 0 0 Median 0.035046 0.028346 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.082596 0.068976 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157370000 157250000 115720 14568000 14568000 0 55300000 55247000 53096 1678900 1678900 0 20317000 20254000 62627 19817000 19817000 0 45688000 45688000 0 + 11099 764;765 11559 55906;55907;55908;55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923;55924;55925;55926;55927;55928;55929;55930;55931;55932;55933;55934;55935;55936;55937;55938;55939;55940;55941;55942 56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051;56052;56053;56054;56055;56056;56057 56051 42 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG EASGSGGGYGGGSGKSSHS___________ R G G G K S 1 0 0 0 0 0 3 23 1 0 0 1 0 1 0 8 0 0 2 0 0 0 40 0 3222.2743 P35527;CON__P35527;K7EQQ3 P35527 580 619 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 1.6612E-199 211.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 11 11 14 6 7 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1067800000 1067800000 0 136990000 136990000 0 200520000 200520000 0 87690000 87690000 0 378370000 378370000 0 114340000 114340000 0 149930000 149930000 0 + 11100 2242 11560 55943;55944;55945;55946;55947;55948;55949;55950;55951;55952;55953;55954;55955;55956;55957;55958;55959;55960;55961;55962;55963;55964;55965;55966;55967;55968;55969;55970;55971;55972;55973;55974;55975;55976;55977;55978;55979;55980;55981;55982;55983;55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001;56002;56003 56058;56059;56060;56061;56062;56063;56064;56065;56066;56067;56068;56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088;56089;56090;56091;56092;56093;56094;56095;56096;56097;56098;56099;56100;56101;56102;56103;56104;56105;56106;56107;56108;56109;56110;56111;56112;56113;56114;56115;56116;56117;56118;56119;56120;56121;56122;56123;56124;56125;56126;56127;56128;56129;56130;56131;56132;56133;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149;56150;56151;56152;56153;56154;56155;56156;56157;56158;56159;56160;56161;56162;56163;56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177 56134 120 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSHS GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG SGGGYGGGSGKSSHS_______________ R G G H S - 1 0 0 0 0 0 3 23 2 0 0 1 0 1 0 11 0 0 2 0 0 0 44 1 3620.4293 P35527;CON__P35527;K7EQQ3 P35527 580 623 KRT9 Keratin, type I cytoskeletal 9 yes no 4 7.6374E-05 34.046 By MS/MS By MS/MS 4 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5789500 5789500 0 0 0 0 3730500 3730500 0 0 0 0 2059000 2059000 0 0 0 0 0 0 0 + 11101 2242 11561 56004;56005;56006;56007;56008;56009 56178;56179;56180;56181;56182;56183 56178 6 GGSGGSYGGGGSGGGYGGGSGSR GGRGGSGGSYGRGSRGGSGGSYGGGGSGGG GGGSGGGYGGGSGSRGGSGGSYGGGSGSGG R G G S R G 0 1 0 0 0 0 0 15 0 0 0 0 0 0 0 5 0 0 2 0 0 0 23 0 1790.7204 P35527;CON__P35527;K7EQQ3 P35527 491 513 KRT9 Keratin, type I cytoskeletal 9 yes no 2 9.2267E-28 105.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 11 1 10 3 4 0.041718 0.036321 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.041718 0.036321 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55269000 55223000 45922 4712900 4712900 0 22015000 22015000 0 536030 536030 0 9676700 9630800 45922 6800500 6800500 0 11528000 11528000 0 + 11102 2242 11562 56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042 56184;56185;56186;56187;56188;56189;56190;56191;56192;56193;56194;56195;56196;56197;56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208;56209;56210;56211;56212;56213;56214;56215;56216 56192 33 GGSGSGPTIEEVD AGGPGPGGFGAQGPKGGSGSGPTIEEVD__ PKGGSGSGPTIEEVD_______________ K G G V D - 0 0 0 1 0 0 2 4 0 1 0 0 0 0 1 2 1 0 0 1 0 0 13 0 1203.5255 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 630 642 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.0017552 68.735 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 231940000 0 0 160760000 0 0 71179000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11103 278 11563 56043;56044 56217;56218 56218 2 GGSGSHNWGTVKDELTESPK SSFSHYSGLKHEDKRGGSGSHNWGTVKDEL HNWGTVKDELTESPKYIQKQISYNYSDLDQ R G G P K Y 0 0 1 1 0 0 2 4 1 0 1 2 0 0 1 3 2 1 0 1 0 0 20 1 2084.9763 Q8NC51 Q8NC51 217 236 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3;4 9.1847E-09 70.837 By MS/MS By MS/MS 2 2 1.0496 1.0492 22.81 4 Median 1.1695 1.1162 39.002 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0496 1.0492 1.1665 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40393000 16284000 24109000 28589000 10616000 17974000 0 0 0 0 0 0 11804000 5668400 6135100 0 0 0 0 0 0 11104 3414 11564 56045;56046;56047;56048 56219;56220;56221;56222;56223 56222 5 GGSISGGGYGSGGGK GGGSGGRYGSGGGSKGGSISGGGYGSGGGK GGSISGGGYGSGGGKHSSGGGSRGGSSSGG K G G G K H 0 0 0 0 0 0 0 9 0 1 0 1 0 0 0 3 0 0 1 0 0 0 15 0 1196.5422 CON__P35908;CON__P35908v2;P35908 CON__P35908 587 601 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.0021357 55.401 By MS/MS By MS/MS By MS/MS 4 2 1 0.056932 0.046877 154.56 3 Median NaN NaN NaN 0 0 Median 0.6255 0.534 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.056932 0.046877 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.035396 0.030338 NaN 1 1 Median 6587800 6334600 253190 0 0 0 4158100 3959600 198520 0 0 0 1260300 1238600 21653 0 0 0 1169400 1136400 33011 + 11105 764;765 11565 56049;56050;56051;56052;56053;56054;56055 56224;56225;56226;56227;56228;56229;56230 56227 7 GGSISVQVNSIK SFRHEKTKKKRGSYRGGSISVQVNSIKFDS SYRGGSISVQVNSIKFDSE___________ R G G I K F 0 0 1 0 0 1 0 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 12 0 1187.651 A0A0A0MRM9;Q14978 A0A0A0MRM9 693 704 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 3.1253E-10 107.79 By MS/MS By MS/MS By MS/MS 1 1 2 0.75383 0.63457 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75383 0.63457 NaN 1 1 Median 1918000 1021700 896270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1918000 1021700 896270 11106 165 11566 56056;56057;56058;56059 56231;56232;56233;56234 56231 4 GGSPFAIVITQQHQIHR NTEVSLSQALEDVSRGGSPFAIVITQQHQI SPFAIVITQQHQIHRSCTVNIMFGTPQEHR R G G H R S 1 1 0 0 0 3 0 2 2 3 0 0 0 1 1 1 1 0 0 1 0 0 17 0 1888.0068 Q9HCD5 Q9HCD5 248 264 NCOA5 Nuclear receptor coactivator 5 yes yes 3 0.00013118 42.338 By MS/MS By matching By matching 1 1 1 0.88079 0.89501 15.006 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88079 0.89501 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90138 0.93348 NaN 1 0 Median 0.82143 0.70665 NaN 1 0 Median 22126000 12236000 9890400 0 0 0 0 0 0 13841000 7632300 6208800 0 0 0 6419000 3562700 2856400 1865900 1040800 825140 11107 4028 11567 56060;56061;56062 56235 56235 1 GGSRGEEVGELSR VQTGLDLLEILRQEKGGSRGEEVGELSRGK EKGGSRGEEVGELSRGKLYSLGNGRWMLTL K G G S R G 0 2 0 0 0 0 3 4 0 0 1 0 0 0 0 2 0 0 0 1 0 0 13 1 1331.643 P09543 P09543 357 369 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 3 0.0010804 44.457 By MS/MS 1 0.90487 0.95209 NaN 1 Median 0.90487 0.95209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3498200 1809000 1689200 3498200 1809000 1689200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11108 1918 11568 56063 56236;56237 56237 2 GGSSPETLPSLLKR SWLERSEKELENMHKGGSSPETLPSLLKRQ KGGSSPETLPSLLKRQGSFSEDVISHKGDL K G G K R Q 0 1 0 0 0 0 1 2 0 0 3 1 0 0 2 3 1 0 0 0 0 0 14 1 1440.7936 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3906 3919 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.017523 33.147 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11109 1220 11569 56064 56238 56238 1 GGSSSGGGYGSGGGGSSSVK YGSGGGKHSSGGGSRGGSSSGGGYGSGGGG GGGYGSGGGGSSSVKGSSGEAFGSSVTFSF R G G V K G 0 0 0 0 0 0 0 10 0 0 0 1 0 0 0 7 0 0 1 1 0 0 20 0 1587.6761 CON__P35908;CON__P35908v2;P35908 CON__P35908 610 629 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.066879 24.935 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 371430 371430 0 0 0 0 371430 371430 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11110 764;765 11570 56065 56239 56239 1 GGSTTGSQFLEQFK VSMLGKGFGDVGEAKGGSTTGSQFLEQFKT KGGSTTGSQFLEQFKTAQALAQLAAQHSQS K G G F K T 0 0 0 0 0 2 1 3 0 0 1 1 0 2 0 2 2 0 0 0 0 0 14 0 1485.71 F8W726;Q14157 F8W726 365 378 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.00017301 80.763 By MS/MS By matching By matching 5 1 2 1.3065 1.1989 22.674 8 Median 1.4484 1.3744 26.268 5 2 Median NaN NaN NaN 0 0 Median 0.91023 0.96819 NaN 1 0 Median 1.2867 1.1123 4.7108 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30484000 13512000 16972000 26024000 11039000 14985000 0 0 0 3492100 2056800 1435400 967800 416250 551550 0 0 0 0 0 0 11111 1083 11571 56066;56067;56068;56069;56070;56071;56072;56073 56240;56241;56242;56243 56243 4 GGSWIQEINVAEK PSFDWKNFEQKMLKKGGSWIQEINVAEKNW KKGGSWIQEINVAEKNWYPRQKICYAKRKL K G G E K N 1 0 1 0 0 1 2 2 0 2 0 1 0 0 0 1 0 1 0 1 0 0 13 0 1429.7201 P78527 P78527 4024 4036 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.5866E-05 87.298 By MS/MS By matching By MS/MS By matching By MS/MS 3 2 2 2 1 0.81563 0.80304 65.658 10 Median 0.83009 0.82108 7.5843 3 0 Median 0.56202 0.49229 49.078 2 0 Median 0.85498 0.92779 9.6571 2 1 Median 0.90151 0.80642 176.82 2 0 Median 0.71727 0.75056 NaN 1 0 Median NaN NaN NaN 0 0 Median 169570000 90852000 78716000 44109000 23137000 20972000 4095300 2379700 1715600 113020000 60298000 52725000 1228900 776060 452850 7111600 4260400 2851100 0 0 0 11112 2647 11572 56074;56075;56076;56077;56078;56079;56080;56081;56082;56083 56244;56245;56246;56247;56248;56249;56250;56251;56252 56248 9 GGSYVYELSAVLIHR GFSEILDMEPYVEHKGGSYVYELSAVLIHR GGSYVYELSAVLIHRGVSAYSGHYIAHVKD K G G H R G 1 1 0 0 0 0 1 2 1 1 2 0 0 0 0 2 0 0 2 2 0 0 15 0 1662.873 Q86UV5;H3BLX5 Q86UV5 331 345 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2;3 0.00017494 64.439 By MS/MS By matching 2 2 1.1714 1.1546 5.0732 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0202 1.1116 4.1831 2 0 Median 1.3409 1.192 3.3066 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3979300 1805700 2173600 0 0 0 0 0 0 3710100 1686500 2023600 269190 119160 150030 0 0 0 0 0 0 11113 3281 11573 56084;56085;56086;56087 56253;56254 56254 2 GGTFQMGGSSSHNRPSGSNVDTLLR SGNRGVQYTRLAVQRGGTFQMGGSSSHNRP SHNRPSGSNVDTLLRLRGRLLLDHEALSCL R G G L R L 0 2 2 1 0 1 0 5 1 0 2 0 1 1 1 5 2 0 0 1 0 0 25 1 2561.2041 Q7Z6Z7 Q7Z6Z7 3150 3174 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3;4 4.6882E-18 73.546 By MS/MS By MS/MS 4 4 0.94873 0.96977 10.237 8 Median 0.89959 0.96977 10.657 4 0 Median 1.0048 0.97758 10.754 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172550000 88123000 84426000 133180000 69715000 63464000 39371000 18408000 20962000 0 0 0 0 0 0 0 0 0 0 0 0 11114 3253 11574 56088;56089;56090;56091;56092;56093;56094;56095 56255;56256;56257;56258;56259;56260;56261;56262;56263;56264;56265;56266 56263 12 GGTGFAGSGVK TGDKLTDRDIIVLQRGGTGFAGSGVKLQAE VLQRGGTGFAGSGVKLQAEKSRPVMQA___ R G G V K L 1 0 0 0 0 0 0 5 0 0 0 1 0 1 0 1 1 0 0 1 0 0 11 0 936.46649 Q9Y314;A0A075B6F9 Q9Y314 279 289 NOSIP Nitric oxide synthase-interacting protein yes no 2 0.013066 56.916 By MS/MS 1 0.5797 0.48949 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5797 0.48949 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1999900 1238900 760960 0 0 0 0 0 0 0 0 0 1999900 1238900 760960 0 0 0 0 0 0 11115 4401 11575 56096 56267 56267 1 GGTGLFELK LRSPSACLVVGKVVRGGTGLFELKQPLR__ VGKVVRGGTGLFELKQPLR___________ R G G L K Q 0 0 0 0 0 0 1 3 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 0 920.49673 O95602;B9ZVN9 O95602 1708 1716 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.011134 47.574 By MS/MS By matching 1 1 1.1105 1.1115 15.939 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89102 0.99301 NaN 1 0 Median 1.3841 1.2441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4143300 2286500 1856900 0 0 0 0 0 0 3901400 2196100 1705300 241950 90418 151530 0 0 0 0 0 0 11116 1781 11576 56097;56098 56268 56268 1 GGTILAPTVSAK ESQDVMQQATNAILRGGTILAPTVSAKTIA ILRGGTILAPTVSAKTIAEQLAEKINAKLN R G G A K T 2 0 0 0 0 0 0 2 0 1 1 1 0 0 1 1 2 0 0 1 0 0 12 0 1113.6394 Q7L014;A0A0C4DG89 Q7L014 883 894 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.001185 56.043 By MS/MS 1 1.4701 1.2583 NaN 1 Median NaN NaN NaN 0 0 Median 1.4701 1.2583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4740000 2430000 2310000 0 0 0 4740000 2430000 2310000 0 0 0 0 0 0 0 0 0 0 0 0 11117 3216 11577 56099 56269;56270 56269 2 GGTLLSVTGEVEPR LPPRGLLGDAPNDPRGGTLLSVTGEVEPRG RGGTLLSVTGEVEPRGYLGPPHQGPPMHHA R G G P R G 0 1 0 0 0 0 2 3 0 0 2 0 0 0 1 1 2 0 0 2 0 0 14 0 1413.7464 P33240;E7EWR4;E9PID8;Q9H0L4 Q9H0L4 339 352 CSTF2;CSTF2T Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant no no 2 1.0543E-15 150.94 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.0487 0.88245 11.907 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79162 0.7913 1.3662 3 0 Median 1.1614 0.97251 9.5788 3 0 Median NaN NaN NaN 0 0 Median 1.1234 0.93131 NaN 1 0 Median 113650000 62038000 51614000 0 0 0 0 0 0 107280000 59099000 48186000 6022200 2771800 3250400 0 0 0 345040 166750 178290 11118 2222;3927 11578 56100;56101;56102;56103;56104;56105;56106;56107 56271;56272;56273;56274;56275;56276;56277;56278;56279 56276 9 GGTLTQYEGK EFVMEVTNKTRADVKGGTLTQYEGKLRLVE RADVKGGTLTQYEGKLRLVEIAQVPKAHVD K G G G K L 0 0 0 0 0 1 1 3 0 0 1 1 0 0 0 0 2 0 1 0 0 0 10 0 1052.5138 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 292 301 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.00047649 90.657 By matching By MS/MS 1 1 1.399 1.2726 8.9052 2 Median 1.3982 1.3553 NaN 1 0 Median 1.3998 1.195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5115900 2073300 3042600 1908800 829700 1079100 3207100 1243600 1963500 0 0 0 0 0 0 0 0 0 0 0 0 11119 86 11579 56108;56109 56280;56281 56280 2 GGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTK KTVNTKKDSESAPVKGGTMTDLDEQEDESM DEDENSTGNKGEQTKNPDLHEDNVTEQTHH K G G T K N 0 0 2 5 0 2 7 5 0 0 1 3 2 0 0 2 6 0 0 0 0 0 35 2 3805.5538 Q8TAQ2;F8VXC8 Q8TAQ2 374 408 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 4 2.8445E-06 37.274 By MS/MS By matching 1 1 0.61244 0.67588 8.1488 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53097 0.63803 NaN 1 0 Median 0.70641 0.71596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17532000 10826000 6705200 0 0 0 0 0 0 16569000 10401000 6168600 962060 425490 536580 0 0 0 0 0 0 11120 3455 11580 56110;56111 56282;56283 56282 2 GGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQR AYPPPAPAYALSSPRGGTPGSGAAAAAGSK SASASSSSSSFAQQRFGAMGGGGPSAAGGG R G G Q R F 8 1 0 0 0 2 0 5 0 0 0 1 0 1 4 12 1 0 0 0 0 0 35 1 3092.4395 O14497 O14497 236 270 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 0.032427 11.995 By MS/MS 1 0.38754 0.46471 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38754 0.46471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6052100 4330000 1722000 0 0 0 0 0 0 6052100 4330000 1722000 0 0 0 0 0 0 0 0 0 11121 1480 11581 56112 56284 56284 1 GGTPSAFDR LGYDTRVTILGHVQRGGTPSAFDRILASRM LGHVQRGGTPSAFDRILASRMGVEAVIALL R G G D R I 1 1 0 1 0 0 0 2 0 0 0 0 0 1 1 1 1 0 0 0 0 0 9 0 906.41954 A0A2R8Y891;P08237;Q01813;B1APP6;V9GY25;P17858 Q01813 311 319 PFKM;PFKP;PFKL ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type no no 2 0.00081314 96.492 By MS/MS By MS/MS 1 1 1.0531 0.95755 3.1749 2 Median 1.0239 0.97929 NaN 1 0 Median 1.083 0.93629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19329000 9192700 10136000 5244600 2585300 2659300 14085000 6607500 7477100 0 0 0 0 0 0 0 0 0 0 0 0 11122 2692;2047;390 11582 56113;56114 56285;56286;56287 56287 3 GGTVADLDEQDEETVTAGGK KNVNLKKDSENTPVKGGTVADLDEQDEETV DLDEQDEETVTAGGKEDEDPAKGDQSRSVD K G G G K E 2 0 0 3 0 1 3 4 0 0 1 1 0 0 0 0 3 0 0 2 0 0 20 0 1990.8967 Q92922 Q92922 402 421 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 7.5E-19 148.91 By MS/MS 1 1.1265 0.96425 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1265 0.96425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2845900 1194700 1651300 0 0 0 0 0 0 0 0 0 2845900 1194700 1651300 0 0 0 0 0 0 11123 3567 11583 56115 56288;56289 56288 2 GGVADALLYR LRNLLEDDEIPLYLKGGVADALLYRATMIL PLYLKGGVADALLYRATMILTVGGTAYAIY K G G Y R A 2 1 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 1 0 0 10 0 1033.5556 D6R9C3;D6RIE3;D6RGV5;H0UI06;P14406 D6R9C3 17 26 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes no 2 0.00034304 104.37 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.49708 0.40975 43.273 5 Median 0.62974 0.61234 34.97 2 0 Median NaN NaN NaN 0 0 Median 0.40988 0.40975 NaN 1 0 Median 0.49708 0.35899 NaN 1 0 Median 0.23395 0.23914 NaN 1 0 Median NaN NaN NaN 0 0 Median 84900000 55513000 29388000 69163000 44527000 24636000 0 0 0 10029000 6931200 3097700 1851800 1170700 681080 3856600 2884100 972480 0 0 0 11124 802 11584 56116;56117;56118;56119;56120 56290;56291;56292;56293 56292 4 GGVAGGSILK SFDVNKPGCEVDDLKGGVAGGSILKGVLKV VDDLKGGVAGGSILKGVLKVGQEIEVRPGI K G G L K G 1 0 0 0 0 0 0 4 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 857.49707 P41091;Q2VIR3 P41091 276 285 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.012347 41.448 By MS/MS By MS/MS 1 1 1.1915 1.0197 8.2609 2 Median NaN NaN NaN 0 0 Median 1.1267 0.96181 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.26 1.081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7724400 3464800 4259600 0 0 0 3221200 1455100 1766000 0 0 0 4503200 2009700 2493500 0 0 0 0 0 0 11125 2295 11585 56121;56122 56294;56295 56294 2 GGVDTAAAPAGGAPPAHAPGPGR GGADGGDGRGGHSCRGGVDTAAAPAGGAPP PAGGAPPAHAPGPGRDAASAARGSRMRPHI R G G G R D 7 1 0 1 0 0 0 6 1 0 0 0 0 0 5 0 1 0 0 1 0 0 23 0 1950.966 Q14657 Q14657 25 47 LAGE3 EKC/KEOPS complex subunit LAGE3 yes yes 3 0.00010496 29.476 By matching By MS/MS 1 1 0.50003 0.45658 7.2518 2 Median 0.43186 0.43376 NaN 1 0 Median 0.57896 0.48061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4401500 2886900 1514600 2286000 1668500 617510 2115500 1218400 897050 0 0 0 0 0 0 0 0 0 0 0 0 11126 2885 11586 56123;56124 56296;56297;56298 56297 3 GGVDVTLPR SMSEVDLNVAAPKVKGGVDVTLPRVEGKVK AAPKVKGGVDVTLPRVEGKVKVPEVDVRGP K G G P R V 0 1 0 1 0 0 0 2 0 0 1 0 0 0 1 0 1 0 0 2 0 0 9 0 912.50288 Q09666 Q09666 585 593 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0070186 52.786 By MS/MS By MS/MS 1 3 0.8906 0.81384 16.42 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90732 0.9693 NaN 1 1 Median 0.87419 0.76189 13.527 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15178000 8796600 6381600 0 0 0 0 0 0 6107500 3177100 2930400 9070700 5619600 3451100 0 0 0 0 0 0 11127 2749 11587 56125;56126;56127;56128 56299;56300;56301;56302;56303;56304 56303 6 GGVILVSHDER METIEALGRALNNFRGGVILVSHDERFIRL NNFRGGVILVSHDERFIRLVCRELWVCEGG R G G E R F 0 1 0 1 0 0 1 2 1 1 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1180.62 Q9NUQ8 Q9NUQ8 658 668 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 2 0.0063851 64.04 By MS/MS 1 1.491 1.3079 NaN 1 Median NaN NaN NaN 0 0 Median 1.491 1.3079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1565800 651950 913850 0 0 0 1565800 651950 913850 0 0 0 0 0 0 0 0 0 0 0 0 11128 4119 11588 56129 56305 56305 1 GGVKRISGLIYEETR IQGITKPAIRRLARRGGVKRISGLIYEETR GGVKRISGLIYEETRGVLKVFLENVIRDAV R G G T R G 0 2 0 0 0 0 2 3 0 2 1 1 0 0 0 1 1 0 1 1 0 0 15 2 1676.921 P62805 P62805 42 56 HIST1H4A Histone H4 yes yes 3 0.00031735 44.294 By MS/MS 1 1.1465 1.0502 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1465 1.0502 NaN 1 0 Median 5272400 2291300 2981100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5272400 2291300 2981100 11129 2597 11589 56130 56306;56307 56307 2 GGVQVPAVDISSSLGGR SGVNVNAKGLDLGGRGGVQVPAVDISSSLG VQVPAVDISSSLGGRAVEVQGPSLESGDHG R G G G R A 1 1 0 1 0 1 0 4 0 1 1 0 0 0 1 3 0 0 0 3 0 0 17 0 1597.8424 Q09666 Q09666 271 287 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.1268E-10 85.845 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 4 1 1 1.0838 0.92627 28.85 13 Median 0.97781 0.93273 4.1894 2 0 Median 1.2344 1.0899 12.813 3 0 Median 0.612 0.65411 78.464 2 1 Median 1.0347 0.90487 4.0224 4 0 Median 1.1307 1.1812 NaN 1 0 Median 1.0838 0.90091 NaN 1 0 Median 134010000 70229000 63777000 66458000 32709000 33749000 11968000 5285100 6682600 43480000 26533000 16946000 6433600 3168900 3264600 5210800 2307700 2903100 456430 224840 231590 11130 2749 11590 56131;56132;56133;56134;56135;56136;56137;56138;56139;56140;56141;56142;56143 56308;56309;56310;56311;56312;56313;56314;56315;56316;56317;56318;56319;56320;56321 56315 14 GGVSGFGVPPASMR LSTPQFLYRWLPSRRGGVSGFGVPPASMRR RGGVSGFGVPPASMRRAADQNGGGGRHNWG R G G M R R 1 1 0 0 0 0 0 4 0 0 0 0 1 1 2 2 0 0 0 2 0 0 14 0 1317.65 B4E1G1;E5RGY0;Q9BUN8 B4E1G1 115 128 DERL1 Derlin-1 yes no 2 0.00022373 78.653 By MS/MS By MS/MS 1 1 1.2697 1.0228 NaN 1 Median NaN NaN NaN 0 0 Median 1.2697 1.0228 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13557000 5916000 7640900 0 0 0 13557000 5916000 7640900 0 0 0 0 0 0 0 0 0 0 0 0 11131 613 11591 56144;56145 56322;56323;56324 56323 3 GGVTEISAADKAEEFRR ALCELFNWLEKEVPKGGVTEISAADKAEEF VTEISAADKAEEFRRQQADFVDLSFPTISS K G G R R Q 3 2 0 1 0 0 3 2 0 1 0 1 0 1 0 1 1 0 0 1 0 0 17 2 1834.9173 Q9NQW7;Q5T6H7 Q9NQW7 355 371 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 3;4 4.7689E-07 73.983 By MS/MS By MS/MS 4 1 1.0177 1.0274 16.389 5 Median 1.01 1.0192 12.985 4 1 Median 1.2291 1.3596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30857000 15464000 15392000 28208000 14532000 13676000 2648700 932550 1716200 0 0 0 0 0 0 0 0 0 0 0 0 11132 4070 11592 56146;56147;56148;56149;56150 56325;56326;56327;56328;56329;56330 56328 6 GGVTGSPEASISGSK KIKMPKFNFSKPKGKGGVTGSPEASISGSK GGVTGSPEASISGSKGDLKSSKASLGSLEG K G G S K G 1 0 0 0 0 0 1 4 0 1 0 1 0 0 1 4 1 0 0 1 0 0 15 0 1332.6521 Q09666 Q09666 5726 5740 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.056608 22.474 By MS/MS 1 0.99425 0.93894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99425 0.93894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1043900 561770 482110 0 0 0 0 0 0 0 0 0 1043900 561770 482110 0 0 0 0 0 0 11133 2749 11593 56151 56331 56331 1 GGVVAGNVAHILDSNHGK LLSRVVAQYAQRNAKGGVVAGNVAHILDSN VAGNVAHILDSNHGKKALLYTAVNQLAMGS K G G G K K 2 0 2 1 0 0 0 4 2 1 1 1 0 0 0 1 0 0 0 3 0 0 18 0 1743.9016 Q6PGP7 Q6PGP7 1213 1230 TTC37 Tetratricopeptide repeat protein 37 yes yes 3 0.010924 31.818 By MS/MS By MS/MS 1 1 1.3702 1.2684 17.223 2 Median 1.1621 1.123 NaN 1 1 Median 1.6155 1.4327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10805000 6237600 4567400 8241600 5285400 2956100 2563400 952200 1611200 0 0 0 0 0 0 0 0 0 0 0 0 11134 3169 11594 56152;56153 56332;56333 56332 2 GGVVAGNVAHILDSNHGKK LLSRVVAQYAQRNAKGGVVAGNVAHILDSN AGNVAHILDSNHGKKALLYTAVNQLAMGSS K G G K K A 2 0 2 1 0 0 0 4 2 1 1 2 0 0 0 1 0 0 0 3 0 0 19 1 1871.9966 Q6PGP7 Q6PGP7 1213 1231 TTC37 Tetratricopeptide repeat protein 37 yes yes 3;4 0.0021118 39.863 By MS/MS 2 1.0141 0.98032 22.756 2 Median 1.0141 0.98032 22.756 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21349000 10169000 11180000 21349000 10169000 11180000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11135 3169 11595 56154;56155 56334;56335 56334 1 GGVVLKEDALPGQK LNDSATEVTGHRWLKGGVVLKEDALPGQKT KGGVVLKEDALPGQKTEFKVDSDDQWGEYS K G G Q K T 1 0 0 1 0 1 1 3 0 0 2 2 0 0 1 0 0 0 0 2 0 0 14 1 1409.7878 P35613;A0A087X2B5;I3L192;A0A2R8YDZ0 P35613 174 187 BSG Basigin yes no 2;3 3.6381E-07 100.48 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 0.90467 0.85922 18.047 9 Median 0.90467 0.85922 12.489 3 0 Median 1.094 1.0276 30.189 3 0 Plateau 0.78222 0.82408 2.888 2 1 Median 1.0884 1.0338 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71893000 36277000 35616000 51348000 25518000 25830000 11068000 5183900 5883800 5236200 3602900 1633300 4240800 1971500 2269400 0 0 0 0 0 0 11136 2249 11596 56156;56157;56158;56159;56160;56161;56162;56163;56164 56336;56337;56338;56339;56340;56341;56342;56343;56344;56345 56337 10 GGVVNAAKEEHETDEK AFEGSDGNKVKTFVRGGVVNAAKEEHETDE GVVNAAKEEHETDEKRGKIYKPSSRFADQK R G G E K R 2 0 1 1 0 0 4 2 1 0 0 2 0 0 0 0 1 0 0 2 0 0 16 1 1711.8013 O15042;E7ET15;H0Y8D9;E7EW00;C9JDJ7;C9J5L1 O15042 138 153 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.028184 17.489 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 0.88618 0.97479 11.193 6 Median 0.95148 1.0146 NaN 1 0 Median 0.82515 0.77689 NaN 1 0 Median 0.88156 1.0062 NaN 1 0 Median 1.0013 0.95381 NaN 1 0 Median 0.84499 0.91285 12.362 2 0 Median NaN NaN NaN 0 0 Median 4666200 2299100 2367100 171530 88286 83240 861170 340350 520820 1032600 540150 492430 131000 61453 69551 2469900 1268800 1201000 0 0 0 11137 1515 11597 56165;56166;56167;56168;56169;56170 56346;56347;56348 56347 3 GGVVNAAKEEHETDEKR AFEGSDGNKVKTFVRGGVVNAAKEEHETDE VVNAAKEEHETDEKRGKIYKPSSRFADQKN R G G K R G 2 1 1 1 0 0 4 2 1 0 0 2 0 0 0 0 1 0 0 2 0 0 17 2 1867.9024 O15042;E7ET15;H0Y8D9;E7EW00;C9JDJ7;C9J5L1 O15042 138 154 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 4 9.5757E-06 52.453 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 3 0.89802 1.0468 13.811 7 Median 1.2142 1.3801 NaN 1 0 Median 1.1973 1.1862 NaN 1 0 Median 0.89802 1.0233 NaN 1 0 Median 1.3253 1.0931 NaN 1 0 Median 0.88834 1.0468 7.4635 3 0 Plateau NaN NaN NaN 0 0 Median 7369000 3637600 3731400 179650 87594 92057 1110100 509480 600580 1506100 850360 655710 102370 37581 64793 4470800 2152600 2318300 0 0 0 11138 1515 11598 56171;56172;56173;56174;56175;56176;56177 56349;56350;56351;56352;56353 56351 5 GGWGISPR EGPMCDLLWSDPDDRGGWGISPRGAGYTFG WSDPDDRGGWGISPRGAGYTFGQDISETFN R G G P R G 0 1 0 0 0 0 0 3 0 1 0 0 0 0 1 1 0 1 0 0 0 0 8 0 828.42424 P67775;P62714;H0YC23;E5RHC1 P67775 207 214 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase yes no 2 0.0077379 65.803 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.077 0.92481 10.453 5 Median 0.87593 0.84777 NaN 1 0 Median 1.2115 1.0152 13.189 2 0 Median 0.99762 0.986 NaN 1 1 Median 1.077 0.89814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21234000 9999000 11235000 553590 256230 297360 14323000 6554800 7768200 3656300 1981400 1674900 2701400 1206600 1494700 0 0 0 0 0 0 11139 2594 11599 56178;56179;56180;56181;56182 56354;56355;56356;56357 56356 4 GGYDLLVR ENKNSHSLYLAGIFRGGYDLLVRSRLALAD YLAGIFRGGYDLLVRSRLALADGVTMQVTV R G G V R S 0 1 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 891.48142 Q9UBF2 Q9UBF2 833 840 COPG2 Coatomer subunit gamma-2 yes yes 2 0.0068836 69.383 By MS/MS By matching By matching By matching 1 2 1 1 1.1479 1.0674 6.391 5 Median 1.0167 0.98211 NaN 1 0 Median 1.2192 1.0455 6.7403 2 0 Median 1.143 1.1426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3534 1.0674 NaN 1 0 Median 8785500 4196800 4588700 3839400 1889200 1950200 4565200 2144500 2420600 308160 137860 170300 0 0 0 0 0 0 72737 25243 47494 11140 4238 11600 56183;56184;56185;56186;56187 56358;56359 56358 2 GGYIGSTYFER NNRRLFEQNVQRSMRGGYIGSTYFERCLK_ RSMRGGYIGSTYFERCLK____________ R G G E R C 0 1 0 0 0 0 1 3 0 1 0 0 0 1 0 1 1 0 2 0 0 0 11 0 1248.5775 P61081 P61081 170 180 UBE2M NEDD8-conjugating enzyme Ubc12 yes yes 2 0.00018909 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 3 3 1.1647 1.0458 51.458 14 Median 1.0951 1.0458 2.3005 2 0 Median 1.1483 0.95215 22.1 3 0 Median 1.1861 1.1619 2.0436 2 0 Median 1.1813 0.98012 NaN 1 0 Median 3.4008 3.5988 16.725 3 1 Plateau 1.1314 0.91828 14.112 3 0 Median 216780000 96697000 120080000 103830000 49576000 54256000 12865000 6074100 6790600 71908000 31668000 40240000 4357500 2075000 2282500 14895000 3450000 11445000 8921400 3854100 5067300 11141 2542 11601 56188;56189;56190;56191;56192;56193;56194;56195;56196;56197;56198;56199;56200;56201 56360;56361;56362;56363;56364;56365;56366;56367;56368;56369;56370;56371 56363 12 GGYTSGTFR RVQVVGTYRCLPGKKGGYTSGTFRTVLIAC CLPGKKGGYTSGTFRTVLIACNVKQMSKDA K G G F R T 0 1 0 0 0 0 0 3 0 0 0 0 0 1 0 1 2 0 1 0 0 0 9 0 944.43519 P25205;J3KQ69;A0A499FHX9 P25205 249 257 MCM3 DNA replication licensing factor MCM3 yes no 2 0.006571 54.157 By MS/MS By matching 1 1 1.2488 1.203 9.5206 2 Median NaN NaN NaN 0 0 Median 1.3004 1.1246 NaN 1 0 Median 1.1993 1.2867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7456400 3321800 4134600 0 0 0 5969100 2581700 3387400 1487200 740070 747180 0 0 0 0 0 0 0 0 0 11142 2129 11602 56202;56203 56372 56372 1 GGYVLHIGTIYGDLK SEDKTEFTVKNAQVRGGYVLHIGTIYGDLK GGYVLHIGTIYGDLKVGDQVWLFIDEPRRR R G G L K V 0 0 0 1 0 0 0 4 1 2 2 1 0 0 0 0 1 0 2 1 0 0 15 0 1604.8562 P49588;H3BPK7 P49588 570 584 AARS Alanine--tRNA ligase, cytoplasmic yes no 2;3 3.1368E-09 99.215 By MS/MS 4 1.1119 1.1001 33.155 4 Median 1.1119 1.1001 33.155 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10763000 5117000 5645600 10763000 5117000 5645600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11143 2385 11603 56204;56205;56206;56207 56373;56374;56375 56375 3 GHAAFTSDPKPTIEVSGK IYQNNLTKSHIEIIRGHAAFTSDPKPTIEV AFTSDPKPTIEVSGKKYTAPHILIATGGMP R G H G K K 2 0 0 1 0 0 1 2 1 1 0 2 0 1 2 2 2 0 0 1 0 0 18 1 1840.9319 P00390 P00390 172 189 GSR Glutathione reductase, mitochondrial yes yes 3 1.6359E-06 65.231 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.94334 0.91283 18.093 4 Median 0.76517 0.72599 NaN 1 0 Median 0.90894 0.85147 NaN 1 0 Median 1.0495 1.1048 NaN 1 0 Median 0.97904 0.97862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48066000 26370000 21695000 34430000 19397000 15032000 10080000 5024400 5055300 1304000 655320 648690 2252400 1293000 959340 0 0 0 0 0 0 11144 1817 11604 56208;56209;56210;56211 56376;56377;56378;56379 56377 4 GHAAFTSDPKPTIEVSGKK IYQNNLTKSHIEIIRGHAAFTSDPKPTIEV FTSDPKPTIEVSGKKYTAPHILIATGGMPS R G H K K Y 2 0 0 1 0 0 1 2 1 1 0 3 0 1 2 2 2 0 0 1 0 0 19 2 1969.0269 P00390 P00390 172 190 GSR Glutathione reductase, mitochondrial yes yes 4 0.00010793 38.227 By MS/MS 1 0.6908 0.67192 NaN 1 Median 0.6908 0.67192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3086700 1779400 1307300 3086700 1779400 1307300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11145 1817 11605 56212 56380 56380 1 GHADSVTGLSLSSEGSYLLSNAMDNTVR KVWDLRQNKLTYTMRGHADSVTGLSLSSEG EGSYLLSNAMDNTVRVWDVRPFAPKERCVK R G H V R V 2 1 2 2 0 0 1 3 1 0 4 0 1 0 0 6 2 0 1 2 0 0 28 0 2880.356 Q96DI7 Q96DI7 233 260 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 3 2.1832E-40 102.21 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 1.1769 1.0347 10.707 11 Median NaN NaN NaN 0 0 Median 1.2942 1.1134 10.373 2 1 Median 0.91697 0.9079 9.2127 3 0 Median 1.2627 1.103 0.47538 2 0 Median 0.90867 0.93437 13.715 2 0 Median 1.1987 1.0133 8.5419 2 0 Median 73467000 37505000 35962000 0 0 0 1531700 459180 1072500 58202000 30893000 27309000 4472100 2060800 2411300 8066900 3580600 4486300 1193800 511480 682340 11146 3627 11606;11607 56213;56214;56215;56216;56217;56218;56219;56220;56221;56222;56223 56381;56382;56383;56384;56385;56386;56387;56388;56389;56390 56382 1792 10 GHALLILRPEELGFLR YIHRVGRTARGLNGRGHALLILRPEELGFL HALLILRPEELGFLRYLKQSKVPLSEFDFS R G H L R Y 1 2 0 0 0 0 2 2 1 1 5 0 0 1 1 0 0 0 0 0 0 0 16 1 1833.0625 Q9NVP1;H7C452 Q9NVP1 524 539 DDX18 ATP-dependent RNA helicase DDX18 yes no 2;3 0.00046025 72.006 By MS/MS By MS/MS By MS/MS 5 3 6 1.1017 1.0751 14.307 14 Median NaN NaN NaN 0 0 Median 1.1557 1.1434 19.134 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99145 1.0772 4.7017 3 0 Median 1.1221 0.97443 10.384 6 0 Median 101340000 49920000 51416000 0 0 0 21047000 9483400 11563000 0 0 0 0 0 0 30715000 15737000 14978000 49574000 24699000 24875000 11147 4137 11608 56224;56225;56226;56227;56228;56229;56230;56231;56232;56233;56234;56235;56236;56237 56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402 56401 12 GHASAPYFGKEEPSVAPSSTGK TSEELLPPPVQTQIKGHASAPYFGKEEPSV FGKEEPSVAPSSTGKTFQPGSWMPRDGKSH K G H G K T 3 0 0 0 0 0 2 3 1 0 0 2 0 1 3 4 1 0 1 1 0 0 22 1 2203.0546 Q8N183 Q8N183 131 152 NDUFAF2 Mimitin, mitochondrial yes yes 3;4 4.1412E-15 95.957 By MS/MS By MS/MS By matching By MS/MS 2 4 1 2 0.76527 0.67654 12.794 9 Median 0.60429 0.61398 1.7832 2 0 Median 0.79436 0.71375 15.332 4 0 Median 0.67364 0.67235 NaN 1 0 Median 0.81539 0.73434 4.1877 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61054000 36366000 24687000 31905000 20748000 11158000 14478000 7593400 6884300 5076300 2884100 2192200 9594700 5141300 4453300 0 0 0 0 0 0 11148 3355 11609 56238;56239;56240;56241;56242;56243;56244;56245;56246 56403;56404;56405;56406;56407;56408;56409;56410;56411;56412;56413;56414;56415 56404 13 GHASLVQELK GWENVPPFDHPLIWKGHASLVQELKAVLRT PLIWKGHASLVQELKAVLRTPPGALVLAVG K G H L K A 1 0 0 0 0 1 1 1 1 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1080.5928 Q96GA7;F8VYZ3;H0YID3 Q96GA7 150 159 SDSL Serine dehydratase-like yes no 2 0.0034179 56.81 By matching By MS/MS 1 1 1.3895 1.2574 35.681 2 Median 1.0068 0.97704 NaN 1 0 Median 1.9177 1.6183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4747300 1971800 2775400 3112500 1456900 1655700 1634700 514980 1119700 0 0 0 0 0 0 0 0 0 0 0 0 11149 3654 11610 56247;56248 56416 56416 1 GHAVGDIPGVR IEENDEVLVAGFGRKGHAVGDIPGVRFKVV FGRKGHAVGDIPGVRFKVVKVANVSLLALY K G H V R F 1 1 0 1 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 2 0 0 11 0 1076.5727 P62266;D6RD47 P62266 109 119 RPS23 40S ribosomal protein S23 yes no 2 0.00041925 101.54 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1164 0.95136 17.382 6 Median 0.98874 0.95495 NaN 1 1 Median 1.0737 0.89872 7.5179 2 1 Median 1.2803 1.2985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2856 1.0048 22.853 2 0 Median 30766000 14399000 16367000 15345000 7505100 7839700 8548800 3999700 4549100 4545600 1895200 2650400 0 0 0 0 0 0 2327100 999200 1327900 11150 2577 11611 56249;56250;56251;56252;56253;56254 56417;56418;56419;56420;56421;56422;56423 56418 7 GHAVNLLDVPVPVAR EKSKPIPIMPASPQKGHAVNLLDVPVPVAR GHAVNLLDVPVPVARKLSAREQRDCEVIER K G H A R K 2 1 1 1 0 0 0 1 1 0 2 0 0 0 2 0 0 0 0 4 0 0 15 0 1555.8835 O00429 O00429 620 634 DNM1L Dynamin-1-like protein yes yes 2;3 2.354E-09 101.95 By MS/MS By matching By matching By matching 2 1 1 3 0.81483 0.71428 14.834 7 Median 0.60998 0.58064 7.8004 2 0 Median 0.81483 0.7042 NaN 1 0 Median 0.72858 0.77787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96346 0.81097 7.4941 3 0 Median 27482000 16238000 11244000 14867000 9335400 5531600 9102900 5031700 4071100 2691300 1421900 1269400 0 0 0 0 0 0 820830 449260 371570 11151 1463 11612 56255;56256;56257;56258;56259;56260;56261 56424;56425;56426;56427 56424 4 GHDASQITLALGTAASYPR VRRIAQEVQRFAQEKGHDASQITLALGTAA SQITLALGTAASYPRACQALGAMLSKGALN K G H P R A 4 1 0 1 0 1 0 2 1 1 2 0 0 0 1 2 2 0 1 0 0 0 19 0 1927.9752 H0UI80;X6RLT1;Q8IXH7 H0UI80 282 300 TH1L;NELFCD Negative elongation factor C/D yes no 3 2.1765E-10 71.592 By MS/MS 1 0.86672 0.89814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86672 0.89814 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4280100 2023300 2256700 0 0 0 0 0 0 4280100 2023300 2256700 0 0 0 0 0 0 0 0 0 11152 1138 11613 56262 56428 56428 1 GHDEREHPFLVK TVMASLRRPKRIIIRGHDEREHPFLVKGGE IIRGHDEREHPFLVKGGEDLRQDQRVEQLF R G H V K G 0 1 0 1 0 0 2 1 2 0 1 1 0 1 1 0 0 0 0 1 0 0 12 1 1462.7317 P78527 P78527 3742 3753 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00039947 61.815 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 2 2 2 0.9287 1.0121 23.752 14 Median 0.7517 0.76926 2.2437 3 0 Median 1.2636 1.1808 17.821 2 0 Median 0.77625 0.90004 6.2294 3 0 Median 1.1448 1.0855 0.66081 2 0 Median 0.9287 1.0082 7.4321 2 0 Median 1.7083 1.5303 11.215 2 0 Median 60471000 30500000 29971000 9154300 5291200 3863100 24494000 10886000 13608000 16356000 8884200 7471300 3566800 1650500 1916200 5086600 3099400 1987100 1813800 688850 1124900 11153 2647 11614 56263;56264;56265;56266;56267;56268;56269;56270;56271;56272;56273;56274;56275;56276;56277 56429;56430;56431;56432;56433;56434;56435;56436;56437;56438;56439;56440;56441;56442;56443;56444;56445 56437 17 GHEFYNPQKK NGNIFAYASSYDWSKGHEFYNPQKKNYIFL YDWSKGHEFYNPQKKNYIFLRNAAEELKPR K G H K K N 0 0 1 0 0 1 1 1 1 0 0 2 0 1 1 0 0 0 1 0 0 0 10 1 1246.6095 P78406 P78406 341 350 RAE1 mRNA export factor yes yes 3 0.0068497 34.532 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 0.9211 0.92868 10.523 6 Median 0.85434 0.79827 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9211 0.99206 9.4726 2 0 Median 1.1645 1.0369 NaN 1 0 Median 0.83764 0.88025 NaN 1 0 Median 1.0853 0.92958 NaN 1 0 Median 2325500 1213800 1111700 86482 45273 41209 0 0 0 750580 389770 360800 538550 227870 310680 813760 478500 335260 136140 72409 63731 11154 2645 11615 56278;56279;56280;56281;56282;56283 56446;56447;56448;56449;56450;56451 56448 6 GHFDYQSLLMR HLQGQTMQDPFGEKRGHFDYQSLLMRLGLI GEKRGHFDYQSLLMRLGLIRQKVLERLHNE R G H M R L 0 1 0 1 0 1 0 1 1 0 2 0 1 1 0 1 0 0 1 0 0 0 11 0 1365.65 Q9H832 Q9H832 306 316 UBE2Z Ubiquitin-conjugating enzyme E2 Z yes yes 2 0.00021132 98.033 By MS/MS By matching 1 1 1.2103 1.1267 6.7285 2 Median 1.1884 1.1816 NaN 1 0 Median 1.2326 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9578200 4085400 5492800 8480200 3635000 4845200 1098000 450370 647600 0 0 0 0 0 0 0 0 0 0 0 0 11155 3986 11616 56284;56285 56452 56452 1 GHFEAFGTLTDCVVVVNPQTK FIGGLNVQTSESGLRGHFEAFGTLTDCVVV GTLTDCVVVVNPQTKRSRCFGFVTYSNVEE R G H T K R 1 0 1 1 1 1 1 2 1 0 1 1 0 2 1 0 3 0 0 4 0 0 21 0 2318.1365 Q13151 Q13151 25 45 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 1.3365E-06 43.12 By matching By MS/MS 1 1 0.97464 0.87816 25.638 2 Median NaN NaN NaN 0 0 Median 1.24 1.0527 NaN 1 0 Median 0.76604 0.73256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3619900 1990500 1629400 0 0 0 393950 150370 243580 3226000 1840100 1385800 0 0 0 0 0 0 0 0 0 11156 2790 11617 56286;56287 56453 56453 1 GHFGPINSVAFHPDGK RFFHLAFEEEFGRVKGHFGPINSVAFHPDG HFGPINSVAFHPDGKSYSSGGEDGYVRIHY K G H G K S 1 0 1 1 0 0 0 3 2 1 0 1 0 2 2 1 0 0 0 1 0 0 16 0 1678.8216 Q13347 Q13347 283 298 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 3 3.2338E-10 99.927 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 0.94158 0.8463 28.527 7 Median 0.79944 0.72429 NaN 1 0 Median 0.78886 0.66053 46.859 3 0 Median 0.94158 0.90759 NaN 1 0 Median 0.99696 0.8463 NaN 1 0 Median 0.98367 0.9776 NaN 1 0 Median NaN NaN NaN 0 0 Median 132440000 71469000 60967000 52741000 29706000 23036000 41333000 21429000 19904000 29248000 15608000 13640000 5083500 2301700 2781800 4030000 2424200 1605700 0 0 0 11157 2806 11618 56288;56289;56290;56291;56292;56293;56294 56454;56455;56456;56457;56458;56459 56454 6 GHFNIQPNKK VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP TYTGKGHFNIQPNKKSPPEPRVAKKLGMIA K G H K K S 0 0 2 0 0 1 0 1 1 1 0 2 0 1 1 0 0 0 0 0 0 0 10 1 1181.6305 Q9UHQ9;H7C0R7 Q9UHQ9 159 168 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 3 0.060138 21.993 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 535400 0 535400 535400 0 535400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11158 4280 11619 56295 56460 56460 1 GHFTSLELVPPSTLTTTHLK ELVTLRLECTNLYRKGHFTSLELVPPSTLT LELVPPSTLTTTHLKAEPLTKATHSSSTSW K G H L K A 0 0 0 0 0 0 1 1 2 0 4 1 0 1 2 2 5 0 0 1 0 0 20 0 2178.1685 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 525 544 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.5491E-21 108.49 By MS/MS By MS/MS 1 1 0.64653 0.67258 28.227 2 Median 0.81969 0.82116 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.50996 0.55089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15611000 9076200 6534700 11642000 6460800 5181500 0 0 0 3968500 2615400 1353100 0 0 0 0 0 0 0 0 0 11159 1220 11620 56296;56297 56461;56462 56461 2 GHFYMHAGSLLLK LGGNDELSATFLEMKGHFYMHAGSLLLKMG MKGHFYMHAGSLLLKMGQHSSNVQWRALSE K G H L K M 1 0 0 0 0 0 0 2 2 0 3 1 1 1 0 1 0 0 1 0 0 0 13 0 1472.7598 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 287 299 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 3 1.3622E-05 126.19 By MS/MS By matching 3 2 0.96613 1.2655 35.762 5 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1038 1.1772 13.166 3 1 Plateau 0.73331 0.65008 41.628 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67691000 34155000 33535000 0 0 0 0 0 0 63331000 31680000 31651000 4360000 2475100 1884900 0 0 0 0 0 0 11160 2401;525 11621;11622 56298;56299;56300;56301;56302 56463;56464;56465;56466;56467 56465 209 5 GHGDTAASTAAPLSEEGEVTSGLQALAVEDTGGPSASAGK ______________________________ LAVEDTGGPSASAGKAEDEGEGGREETERE R G H G K A 8 0 0 2 0 1 4 7 1 0 3 1 0 0 2 5 4 0 0 2 0 0 40 0 3695.7398 Q9BTK6 Q9BTK6 6 45 PAGR1 PAXIP1-associated glutamate-rich protein 1 yes yes 3 2.3141E-16 55.608 By MS/MS 1 0.4949 0.52249 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4949 0.52249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5325700 3278300 2047400 0 0 0 0 0 0 5325700 3278300 2047400 0 0 0 0 0 0 0 0 0 11161 3827 11623 56303 56468;56469 56469 2 GHGEPQEPGDDFFNMLIK LPGLRITHSNAGHLRGHGEPQEPGDDFFNM EPQEPGDDFFNMLIKYQSSRIDDQRCPPPD R G H I K Y 0 0 1 2 0 1 2 3 1 1 1 1 1 2 2 0 0 0 0 0 0 0 18 0 2029.9204 A0A0A0MSK4;A0A0A0MRC4;Q86YR5 A0A0A0MSK4 588 605 GPSM1 G-protein-signaling modulator 1 yes no 4 0.054968 9.1638 By MS/MS By matching By matching By matching 2 1 1 1 0.9723 0.93358 22.481 5 Median 0.78459 0.74863 0 2 0 Median NaN NaN NaN 0 0 Median 0.9723 0.93358 NaN 1 0 Median 1.4442 1.1916 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3842 1.1546 NaN 1 0 Median 7822700 4239000 3583700 4232100 2411300 1820900 0 0 0 2444800 1406600 1038200 802710 271720 530990 0 0 0 343040 149420 193620 11162 157 11624 56304;56305;56306;56307;56308 56470 56470 1 GHGLSITPLPAGHMIGGTIWK IQQLKFSQIVNLKGKGHGLSITPLPAGHMI TPLPAGHMIGGTIWKIVKDGEEEIVYAVDF K G H W K I 1 0 0 0 0 0 0 5 2 3 2 1 1 0 2 1 2 1 0 0 0 0 21 0 2142.1408 Q9P2I0 Q9P2I0 141 161 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 3 0.0010628 40.952 By MS/MS 2 0.70936 0.78317 1.5402 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70936 0.78317 1.5402 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9154300 5498900 3655400 0 0 0 0 0 0 9154300 5498900 3655400 0 0 0 0 0 0 0 0 0 11163 4223 11625 56309;56310 56471;56472 56472 2 GHIDFIYLALR LQTVQKFAEHSVRKRGHIDFIYLALRKMRE VRKRGHIDFIYLALRKMREYGVERDLAVYN R G H L R K 1 1 0 1 0 0 0 1 1 2 2 0 0 1 0 0 0 0 1 0 0 0 11 0 1316.7241 K7EPL5;Q9BQ95 K7EPL5 105 115 ECSIT Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial yes no 2 0.0029089 50.878 By MS/MS 1 1.4511 1.2668 NaN 1 Median NaN NaN NaN 0 0 Median 1.4511 1.2668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 717490 264880 452610 0 0 0 717490 264880 452610 0 0 0 0 0 0 0 0 0 0 0 0 11164 1393 11626 56311 56473 56473 1 GHILELLTEVTR SCFIQTLVDVFTKRKGHILELLTEVTRRMA KRKGHILELLTEVTRRMAEAELVQEGKARK K G H T R R 0 1 0 0 0 0 2 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1379.7773 P31944 P31944 200 211 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 0.00028532 98.943 By MS/MS 2 0.43495 0.38515 158.49 2 Median NaN NaN NaN 0 0 Median 0.43495 0.38515 158.49 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6159600 2607900 3551700 0 0 0 6159600 2607900 3551700 0 0 0 0 0 0 0 0 0 0 0 0 11165 2209 11627 56312;56313 56474;56475 56474 2 GHLAFLSGQ YKCGEKGHYANRCTKGHLAFLSGQ______ ANRCTKGHLAFLSGQ_______________ K G H G Q - 1 0 0 0 0 1 0 2 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 928.47667 C9JEV9;O95639;B7Z7B0 C9JEV9 203 211 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes no 2 0.0083892 66.994 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 663260 0 0 0 0 0 0 0 0 0 0 0 663260 0 0 0 0 0 0 0 0 11166 693 11628 56314 56476 56476 1 GHLDALTADVK EHKEKKYEMDFGIWKGHLDALTADVKEKMY GIWKGHLDALTADVKEKMYNVLLFVDGGWM K G H V K E 2 0 0 2 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1138.5982 P57740 P57740 804 814 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.00011196 123.63 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 2 1.01 0.93837 20.289 9 Median NaN NaN NaN 0 0 Median 0.99665 0.86855 5.6516 2 0 Median 1.074 1.1203 7.5312 2 0 Median 1.3007 1.1388 NaN 1 0 Median 0.97391 1.0232 12.245 2 0 Median 0.88126 0.73252 23.688 2 1 Median 51400000 24284000 27116000 0 0 0 8111200 4240200 3871000 25033000 12324000 12709000 10657000 4501100 6156200 3198600 1054100 2144500 4399500 2164600 2234900 11167 2518 11629 56315;56316;56317;56318;56319;56320;56321;56322;56323 56477;56478;56479;56480;56481 56480 4 GHLDALTADVKEK EHKEKKYEMDFGIWKGHLDALTADVKEKMY WKGHLDALTADVKEKMYNVLLFVDGGWMVD K G H E K M 2 0 0 2 0 0 1 1 1 0 2 2 0 0 0 0 1 0 0 1 0 0 13 1 1395.7358 P57740 P57740 804 816 NUP107 Nuclear pore complex protein Nup107 yes yes 3 0.001022 45.115 By matching By MS/MS 1 2 0.9355 1.0702 19.664 3 Plateau 0.97693 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80222 0.89568 25.17 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5153800 2210100 2943800 1159300 535740 623580 0 0 0 3994500 1674300 2320200 0 0 0 0 0 0 0 0 0 11168 2518 11630 56324;56325;56326 56482 56482 1 GHLDNISNNLLIGAINIENGK TTDHISAAGPWLKFRGHLDNISNNLLIGAI SNNLLIGAINIENGKANSVRNAVTQEFGPV R G H G K A 1 0 5 1 0 0 1 3 1 4 3 1 0 0 0 1 0 0 0 0 0 0 21 0 2218.1706 A2A274;Q99798 A2A274 633 653 ACO2 Aconitate hydratase, mitochondrial yes no 3 1.2053E-17 99.508 By MS/MS By MS/MS 1 1 1.3007 1.2007 8.4178 2 Median 1.1604 1.1313 NaN 1 0 Median 1.4579 1.2743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8350300 3252700 5097600 2815500 1306900 1508600 5534900 1945800 3589100 0 0 0 0 0 0 0 0 0 0 0 0 11169 495 11631 56327;56328 56483;56484;56485;56486 56485 4 GHLEMVR SNEFKESALTLACYKGHLEMVRFLLEAGAD ALTLACYKGHLEMVRFLLEAGADQEHKTDE K G H V R F 0 1 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 840.42761 H0YM23;O75179;A0A1W2PQ15 H0YM23 297 303 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 0.060461 48.174 By MS/MS 1 1.4882 1.3193 NaN 1 Median NaN NaN NaN 0 0 Median 1.4882 1.3193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 359480 152590 206890 0 0 0 359480 152590 206890 0 0 0 0 0 0 0 0 0 0 0 0 11170 1197 11632 56329 56487 56487 1 GHLENNPALEK VVLMGKNTMMRKAIRGHLENNPALEKLLPH KAIRGHLENNPALEKLLPHIRGNVGFVFTK R G H E K L 1 0 2 0 0 0 2 1 1 0 2 1 0 0 1 0 0 0 0 0 0 0 11 0 1220.6149 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;Q8NHW5;F8VWV4;F8VS58;F8VZS0 P05388 67 77 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 8.8523E-22 199.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 4 2 3 1.0821 0.933 14.738 20 Median 1.0643 0.99485 16.014 4 0 Median 0.95339 0.80088 12.041 5 0 Median 0.94486 0.90867 5.9648 2 0 Median 1.1114 0.93431 4.9227 4 0 Median 1.0933 1.0889 0.28534 2 0 Median 1.1687 0.97086 4.6436 3 0 Median 131380000 63138000 68244000 33116000 16484000 16632000 40182000 19687000 20495000 12740000 6267500 6472300 18492000 8533700 9958000 17193000 7839200 9353800 9658700 4326300 5332400 11171 1865 11633 56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341;56342;56343;56344;56345;56346;56347;56348;56349 56488;56489;56490;56491;56492;56493;56494;56495;56496;56497;56498;56499;56500;56501;56502;56503;56504;56505;56506;56507;56508;56509;56510;56511;56512;56513;56514;56515;56516 56503 29 GHLESSLLSHLVDPK LLDKPNAQFDSTAPRGHLESSLLSHLVDPK GHLESSLLSHLVDPKDLEPRAANCTRVLVW R G H P K D 0 0 0 1 0 0 1 1 2 0 4 1 0 0 1 3 0 0 0 1 0 0 15 0 1630.8679 O94766;G3V150 O94766 278 292 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes no 3 0.053871 11.474 By matching By MS/MS 1 1 1.1713 1.133 12.377 2 Median NaN NaN NaN 0 0 Median 1.4364 1.2367 NaN 1 0 Median 0.95514 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135500 1357000 1778500 0 0 0 233700 98052 135650 2901800 1258900 1642900 0 0 0 0 0 0 0 0 0 11172 1101 11634 56350;56351 56517 56517 1 GHLLDSFAR GHIAVSAAVFPTGTKGHLLDSFARSALWDS FPTGTKGHLLDSFARSALWDSGLDYLHGTG K G H A R S 1 1 0 1 0 0 0 1 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1014.5247 Q9NQW7;Q5T6H7 Q9NQW7 465 473 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 0.00047579 98.299 By MS/MS By MS/MS 2 1 1.019 0.9247 9.3026 3 Plateau 0.88134 0.84452 3.8826 2 1 Median 1.1383 0.98508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21093000 9988600 11104000 14974000 6955200 8019100 6118600 3033400 3085200 0 0 0 0 0 0 0 0 0 0 0 0 11173 4070 11635 56352;56353;56354 56518;56519;56520 56519 3 GHLLYVALSPGQHR ITATVTPDLKHPEGRGHLLYVALSPGQHRL RGHLLYVALSPGQHRLGGTALAQCFSQLGE R G H H R L 1 1 0 0 0 1 0 2 2 0 3 0 0 0 1 1 0 0 1 1 0 0 14 0 1546.8368 O15067 O15067 849 862 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2;3 5.3516E-26 157.66 By MS/MS By MS/MS By matching 3 3 1 0.90955 0.84006 21.051 7 Median 0.90955 0.8536 8.1224 3 1 Median 1.0075 0.84006 30.997 3 0 Median 0.69673 0.70511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58298000 29922000 28377000 38052000 19853000 18199000 18403000 9117400 9285800 1843300 951000 892260 0 0 0 0 0 0 0 0 0 11174 1518 11636 56355;56356;56357;56358;56359;56360;56361 56521;56522;56523;56524;56525;56526;56527;56528;56529 56525 9 GHLMAITR NYRHLALLCDTMTCRGHLMAITRHGVNRQD CDTMTCRGHLMAITRHGVNRQDTGPLMKCS R G H T R H 1 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 0 0 8 0 897.48546 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1409 1416 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.016506 49.358 By MS/MS By MS/MS 1 1 1.1896 0.99827 23.213 2 Median NaN NaN NaN 0 0 Median 1.3919 1.1763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0167 0.84715 NaN 1 0 Median 4207300 1922100 2285200 0 0 0 2533000 1027000 1506000 0 0 0 0 0 0 0 0 0 1674300 895070 779240 11175 486 11637 56362;56363 56530;56531;56532 56532 3 GHLSRPEAQSLSPYTTSANR QLEGATRGTTEPHSRGHLSRPEAQSLSPYT PEAQSLSPYTTSANRAKLLAKNRQTFLLQT R G H N R A 2 2 1 0 0 1 1 1 1 0 2 0 0 0 2 4 2 0 1 0 0 0 20 1 2171.0719 O94776 O94776 424 443 MTA2 Metastasis-associated protein MTA2 yes yes 2;3;4 7.8494E-20 121.82 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 5 6 6 0.7133 0.71612 22.694 23 Median 0.59689 0.61199 NaN 1 0 Median 0.80361 0.76176 6.5115 2 0 Median 0.69107 0.77118 8.1269 3 0 Median 0.72208 0.66463 6.7281 5 0 Median 0.7116 0.77317 19.833 6 0 Median 0.72085 0.63565 32.019 6 0 Median 215080000 121360000 93714000 2443900 1404400 1039500 3856600 1727000 2129600 98757000 56290000 42467000 25396000 13662000 11734000 69990000 40043000 29947000 14634000 8235400 6398400 11176 1723 11638 56364;56365;56366;56367;56368;56369;56370;56371;56372;56373;56374;56375;56376;56377;56378;56379;56380;56381;56382;56383;56384;56385;56386 56533;56534;56535;56536;56537;56538;56539;56540;56541;56542;56543;56544;56545;56546;56547;56548;56549;56550;56551;56552;56553;56554 56544 21 GHNGWVTQIATTPQFPDMILSASR ______________________________ ATTPQFPDMILSASRDKTIIMWKLTRDETN K G H S R D 2 1 1 1 0 2 0 2 1 2 1 0 1 1 2 2 3 1 0 1 0 0 24 0 2626.2962 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;D6RFZ9;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909;D6RHJ5;D6RDI0 P63244 13 36 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 7.5839E-08 41.76 By MS/MS By MS/MS 2 1 0.8236 0.72732 4.1631 3 Median 0.79238 0.74126 5.6796 2 0 Median 0.87453 0.72732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19266000 10548000 8718100 9131300 5363800 3767500 10135000 5184400 4950600 0 0 0 0 0 0 0 0 0 0 0 0 11177 2624 11639 56387;56388;56389 56555;56556;56557;56558 56556 4 GHNTNVGAIVFHPK KLWSVPDCNLLHTLRGHNTNVGAIVFHPKS RGHNTNVGAIVFHPKSTVSLDPKDVNLASC R G H P K S 1 0 2 0 0 0 0 2 2 1 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1489.779 O43172 O43172 271 284 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2;3 1.1124E-08 105.03 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 4 2 3 1.1507 0.96854 46.422 13 Median 1.7092 1.6181 NaN 1 1 Median 0.81629 0.80206 36.683 2 0 Median 0.84849 0.82144 NaN 1 0 Median 1.179 1.0078 50.353 4 0 Median 0.80932 0.80038 53.23 2 0 Median 1.1679 0.96854 52.841 3 0 Plateau 76602000 39272000 37330000 8444900 3512000 4932900 4944500 2869700 2074800 22872000 12434000 10438000 28142000 13073000 15069000 5756000 3704000 2052100 6442600 3679900 2762700 11178 1557 11640 56390;56391;56392;56393;56394;56395;56396;56397;56398;56399;56400;56401;56402 56559;56560;56561;56562;56563;56564;56565;56566;56567 56563 9 GHPDLIMGFNTFLPPGYK IDTPGVISRVSQLFKGHPDLIMGFNTFLPP DLIMGFNTFLPPGYKIEVQTNDMVNVTTPG K G H Y K I 0 0 1 1 0 0 0 3 1 1 2 1 1 2 3 0 1 0 1 0 0 0 18 0 2002.9975 Q96ST3 Q96ST3 174 191 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.02956 14.041 By matching By MS/MS By matching 1 1 2 0.70766 0.65501 10.677 4 Median 0.67352 0.63956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51791 0.56071 NaN 1 0 Median 0.77936 0.69634 5.2778 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4127000 2603200 1523900 840240 394430 445810 0 0 0 3046500 2068500 978020 240270 140230 100040 0 0 0 0 0 0 11179 3737 11641 56403;56404;56405;56406 56568;56569 56568 2 GHPDLQGQPAEEIFESVGDR HFQQELDKKKEEFQKGHPDLQGQPAEEIFE QGQPAEEIFESVGDRELRQVFEGQNRIHLE K G H D R E 1 1 0 2 0 2 3 3 1 1 1 0 0 1 2 1 0 0 0 1 0 0 20 0 2180.0134 P49257 P49257 310 329 LMAN1 Protein ERGIC-53 yes yes 3 7.8031E-09 72.086 By MS/MS By matching 1 1 0.84596 0.77807 3.2333 2 Median 0.80524 0.79607 NaN 1 0 Median 0.88874 0.76048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7226400 3951000 3275400 4274300 2632800 1641600 2952100 1318200 1633800 0 0 0 0 0 0 0 0 0 0 0 0 11180 2375 11642 56407;56408 56570;56571;56572 56571 3 GHPEFSTNR QDGIAPRMFKALIGKGHPEFSTNRQQDAQE KALIGKGHPEFSTNRQQDAQEFFLHLINMV K G H N R Q 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 9 0 1043.4785 P45974 P45974 424 432 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0073226 51.854 By matching By MS/MS 1 2 1.0057 0.89844 8.332 3 Plateau 0.88961 0.89844 NaN 1 0 Median 1.0057 0.86964 11.479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4630000 2283700 2346300 435110 240180 194930 4194900 2043500 2151400 0 0 0 0 0 0 0 0 0 0 0 0 11181 2332 11643 56409;56410;56411 56573;56574;56575 56573 3 GHQAFDVGQPR QLRACPPGTAACLVRGHQAFDVGQPRDGLK CLVRGHQAFDVGQPRDGLKLVRKDRLVLSY R G H P R D 1 1 0 1 0 2 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 11 0 1210.5843 P11717 P11717 239 249 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2;3 0.00012782 69.01 By MS/MS 4 1.1166 0.94863 29.049 4 Median NaN NaN NaN 0 0 Median 1.1166 0.94863 29.049 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13962000 6969800 6992400 0 0 0 13962000 6969800 6992400 0 0 0 0 0 0 0 0 0 0 0 0 11182 1969 11644 56412;56413;56414;56415 56576;56577;56578 56576 3 GHQLLSADVDIK KGRLQILHIHTARMRGHQLLSADVDIKELA RMRGHQLLSADVDIKELAVETKNFSGAELE R G H I K E 1 0 0 2 0 1 0 1 1 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1294.6881 I3L0N3;P46459 I3L0N3 411 422 NSF Vesicle-fusing ATPase yes no 2;3 0.0001168 103.7 By MS/MS 2 1.247 1.0898 1.0008 2 Median NaN NaN NaN 0 0 Median 1.247 1.0898 1.0008 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18627000 7870800 10757000 0 0 0 18627000 7870800 10757000 0 0 0 0 0 0 0 0 0 0 0 0 11183 1272 11645 56416;56417 56579;56580 56580 2 GHQQLYWSHPR ______________________________ ______________________________ M G H P R K 0 1 0 0 0 2 0 1 2 0 1 0 0 0 1 1 0 1 1 0 0 0 11 0 1407.6796 P62273;A0A2R8Y851 P62273 2 12 RPS29 40S ribosomal protein S29 yes no 2;3 2.8973E-05 148.56 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1 1.0436 0.99491 13.872 8 Median 1.0026 0.97091 4.5808 2 0 Median 1.0228 0.82728 18.695 3 1 Median 1.0542 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1091 1.1827 NaN 1 0 Median 1.2664 0.98701 NaN 1 0 Median 130060000 64207000 65852000 98197000 48584000 49613000 22855000 11537000 11318000 1452600 624340 828300 0 0 0 907760 409250 498510 6646900 3052500 3594500 11184 2579 11646 56418;56419;56420;56421;56422;56423;56424;56425;56426 56581;56582;56583;56584;56585;56586;56587;56588;56589;56590;56591;56592;56593;56594 56583 14 GHREEEQEDLTK NAKKGPSTPYTKSKRGHREEEQEDLTKDMD SKRGHREEEQEDLTKDMDEPSPVPNVEEVT R G H T K D 0 1 0 1 0 1 4 1 1 0 1 1 0 0 0 0 1 0 0 0 0 0 12 1 1469.6746 Q8TAQ2;F8VXC8 Q8TAQ2 330 341 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 0.0096568 28.283 By MS/MS By matching By MS/MS By matching 1 3 3 2 0.90105 1.0097 17.174 9 Median NaN NaN NaN 0 0 Median 1.0801 1.0321 NaN 1 0 Median 0.80311 0.91182 2.3793 3 0 Median 1.3893 1.3352 8.0994 3 0 Median 0.88339 0.9878 3.1009 2 0 Median NaN NaN NaN 0 0 Median 4845200 2474100 2371000 0 0 0 1014700 492880 521850 2300000 1275300 1024700 1058100 473090 585020 472370 232880 239490 0 0 0 11185 3455 11647 56427;56428;56429;56430;56431;56432;56433;56434;56435 56595;56596;56597 56595 3 GHREEEQEDLTKDMDEPSPVPNVEEVTLPK NAKKGPSTPYTKSKRGHREEEQEDLTKDMD EPSPVPNVEEVTLPKTVNTKKDSESAPVKG R G H P K T 0 1 1 3 0 1 7 1 1 0 2 2 1 0 4 1 2 0 0 3 0 0 30 2 3446.6148 Q8TAQ2;F8VXC8 Q8TAQ2 330 359 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 4 1.1955E-09 50.413 By MS/MS 1 0.35627 0.40596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35627 0.40596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5236900 4059500 1177400 0 0 0 0 0 0 5236900 4059500 1177400 0 0 0 0 0 0 0 0 0 11186 3455 11648 56436 56598 56598 1 GHSAAVHSFAFSNDSR KKGEFQEVVRAFELKGHSAAVHSFAFSNDS HSAAVHSFAFSNDSRRMASVSKDGTWKLWD K G H S R R 3 1 1 1 0 0 0 1 2 0 0 0 0 2 0 4 0 0 0 1 0 0 16 0 1688.7655 E9PF19;Q9Y4P3;Q96E41 E9PF19 241 256 TBL2 Transducin beta-like protein 2 yes no 3 0.00040199 53.403 By MS/MS By matching By MS/MS 1 1 1 1.455 1.4344 30.758 3 Median 1.2636 1.2501 NaN 1 1 Median 2.613 2.2507 NaN 1 0 Median 1.455 1.4344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6945300 2530800 4414400 4207300 1293300 2914000 1744100 887900 856190 993880 349600 644280 0 0 0 0 0 0 0 0 0 11187 917 11649 56437;56438;56439 56599;56600 56599 2 GHSAQIAKPIRPGQHPAASPTHPSAIR DRIKEAVRSKNMARRGHSAQIAKPIRPGQH GQHPAASPTHPSAIRGGGAFVQNSQPVAVR R G H I R G 5 2 0 0 0 2 0 2 3 3 0 1 0 0 5 3 1 0 0 0 0 0 27 2 2781.4899 P33176 P33176 915 941 KIF5B Kinesin-1 heavy chain yes yes 4;5 2.1368E-09 49.266 By MS/MS 2 0.58222 0.63149 8.6762 2 Median NaN NaN NaN 0 0 Median 0.58222 0.63149 8.6762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7006700 4473200 2533400 0 0 0 7006700 4473200 2533400 0 0 0 0 0 0 0 0 0 0 0 0 11188 2221 11650 56440;56441 56601;56602 56601 2 GHSLSDGLEEVQK VVSELGPIVQFVKAKGHSLSDGLEEVQKAE AKGHSLSDGLEEVQKAEMKAYMELVNNMLL K G H Q K A 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1397.6787 C9JNK6;O75431;C9JAZ1 C9JNK6 40 52 MTX2 Metaxin-2 yes no 2 0.0002112 92.538 By MS/MS 1 0.82174 0.76366 NaN 1 Median 0.82174 0.76366 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5016100 2850500 2165600 5016100 2850500 2165600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11189 712 11651 56442 56603 56603 1 GHSLSDGLEEVQKAEMK VVSELGPIVQFVKAKGHSLSDGLEEVQKAE SLSDGLEEVQKAEMKAYMELVNNMLLTAEL K G H M K A 1 0 0 1 0 1 3 2 1 0 2 2 1 0 0 2 0 0 0 1 0 0 17 1 1856.8938 C9JNK6;O75431;C9JAZ1 C9JNK6 40 56 MTX2 Metaxin-2 yes no 3 0.0008714 34.909 By MS/MS By matching 1 1 1.1741 1.1334 21.131 2 Median 0.96012 0.97613 NaN 1 0 Median 1.4358 1.3161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11788000 5823800 5964000 10623000 5342100 5281300 1164500 481770 682710 0 0 0 0 0 0 0 0 0 0 0 0 11190 712 11652 56443;56444 56604;56605 56605 2 GHSSFVNEATFTQDGHYIISASSDGTVK RIHGLKSGKTLKEFRGHSSFVNEATFTQDG DGHYIISASSDGTVKIWNMKTTECSNTFKS R G H V K I 2 0 1 2 0 1 1 3 2 2 0 1 0 2 0 5 3 0 1 2 0 0 28 0 2954.3682 Q2TAY7 Q2TAY7 347 374 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3;4 1.6645E-20 63.803 By MS/MS By matching 3 2 1.2299 1.1982 15.934 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2074 1.1982 20.954 3 0 Median 1.339 1.1659 11.485 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14146000 6415300 7730300 0 0 0 0 0 0 12868000 5902600 6964900 1278000 512680 765320 0 0 0 0 0 0 11191 3005 11653 56445;56446;56447;56448;56449 56606;56607 56606 2 GHSVEEALR AQAATGFIIDPKANKGHSVEEALRAAVIGP DPKANKGHSVEEALRAAVIGPDVFAKLLSA K G H L R A 1 1 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 996.49886 P58107;A0A075B730 P58107 661 669 EPPK1 Epiplakin yes no 2 0.0047275 75.213 By MS/MS 3 1.2213 1.0351 0.84569 2 Median NaN NaN NaN 0 0 Median 1.2213 1.0351 0.84569 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3465100 1492400 1972700 0 0 0 3465100 1492400 1972700 0 0 0 0 0 0 0 0 0 0 0 0 11192 2520 11654 56450;56451;56452 56608;56609;56610 56608 3 GHTDSVQDISFDHSGK KVWDYETGDFERTLKGHTDSVQDISFDHSG HTDSVQDISFDHSGKLLASCSADMTIKLWD K G H G K L 0 0 0 3 0 1 0 2 2 1 0 1 0 1 0 3 1 0 0 1 0 0 16 0 1728.7703 P43034 P43034 148 163 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 3 3.7051E-05 60.474 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.138 0.99399 11.671 7 Median 1.152 1.0843 18.913 3 0 Median 1.1681 1.0173 5.0867 2 0 Median 0.96255 0.95093 NaN 1 1 Median 1.1116 0.99399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27817000 13814000 14003000 9632400 4955600 4676800 10514000 4920300 5593700 4046900 2090500 1956400 3624000 1847700 1776300 0 0 0 0 0 0 11193 2321 11655 56453;56454;56455;56456;56457;56458;56459 56611;56612;56613 56613 3 GHTEVIVPHLTESYNSHR ANLRPLLDSGTMGTKGHTEVIVPHLTESYN EVIVPHLTESYNSHRDPPEEEIPFCTLKSF K G H H R D 0 1 1 0 0 0 2 1 3 1 1 0 0 0 1 2 2 0 1 2 0 0 18 0 2075.0185 A0AVT1;H0Y8S8 A0AVT1 598 615 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes no 4 1.3463E-06 64.537 By MS/MS 1 0.86834 0.83892 NaN 1 Median 0.86834 0.83892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6544900 4612200 1932700 6544900 4612200 1932700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11194 489 11656 56460 56614 56614 1 GHTFAEELQK LSSAIGFALELVTEKGHTFAEELQKIQCTL LVTEKGHTFAEELQKIQCTLQDVGSALATP K G H Q K I 1 0 0 0 0 1 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1158.5669 Q96EY8;F5H4Z7;S4R3P5 Q96EY8 107 116 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 2 0.0004468 115.71 By MS/MS 1 1.0232 0.95898 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0232 0.95898 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10693000 4943200 5750000 0 0 0 0 0 0 10693000 4943200 5750000 0 0 0 0 0 0 0 0 0 11195 3645 11657 56461 56615 56615 1 GHTVTEPIQPLEPELPGEGQPEAR AAPTSTKKKKKKKERGHTVTEPIQPLEPEL PLEPELPGEGQPEARATPGSTKKRKKQSQE R G H A R A 1 1 0 0 0 2 5 3 1 1 2 0 0 0 5 0 2 0 0 1 0 0 24 0 2580.282 O15446 O15446 431 454 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 3 1.8019E-08 59.212 By MS/MS By MS/MS 2 2 0.4197 0.42584 18.256 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4197 0.43618 12.09 2 1 Median 0.41376 0.37815 25.492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33013000 22247000 10767000 0 0 0 0 0 0 31414000 21182000 10232000 1599800 1065100 534710 0 0 0 0 0 0 11196 1548 11658 56462;56463;56464;56465 56616;56617;56618 56616 3 GHVDILAPTVQELAALEK VTYGQKRAAGGGSYKGHVDILAPTVQELAA DILAPTVQELAALEKEAQTSFLHLGYLPNQ K G H E K E 3 0 0 1 0 1 2 1 1 1 3 1 0 0 1 0 1 0 0 2 0 0 18 0 1903.0415 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 622 639 DDX1 ATP-dependent RNA helicase DDX1 yes no 2;3 5.9725E-07 82.007 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 5 3 1 4 0.94623 0.8806 27.069 15 Median 0.84113 0.79805 7.601 2 0 Median 0.99948 0.87308 18.369 5 0 Median 0.94623 0.9554 2.7127 3 0 Median 1.0482 0.91128 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96449 0.79658 53.045 4 0 Median 156040000 78506000 77533000 8710200 4831500 3878700 31598000 15547000 16052000 107300000 54100000 53199000 612280 290730 321550 0 0 0 7818300 3736900 4081400 11197 135 11659 56466;56467;56468;56469;56470;56471;56472;56473;56474;56475;56476;56477;56478;56479;56480 56619;56620;56621;56622;56623;56624;56625;56626;56627;56628;56629;56630;56631 56627 13 GHVFEESQVAGTPMFVVK EQVVGGIYGVLNRKRGHVFEESQVAGTPMF FEESQVAGTPMFVVKAYLPVNESFGFTADL R G H V K A 1 0 0 0 0 1 2 2 1 0 0 1 1 2 1 1 1 0 0 4 0 0 18 0 1960.9717 P13639 P13639 768 785 EEF2 Elongation factor 2 yes yes 2;3 6.4088E-33 204.13 By MS/MS By matching By MS/MS By MS/MS By matching 14 8 5 3 1 1.0011 0.8748 22.838 30 Median 1.0197 0.90927 24.986 14 0 Median 0.91595 0.80612 13.313 8 0 Median 1.0363 1.1362 14.786 5 0 Median 0.79982 0.69387 13.703 2 1 Median NaN NaN NaN 0 0 Median 0.99375 0.81336 NaN 1 0 Median 611690000 298080000 313620000 463750000 225450000 238300000 14588000 7860100 6728300 116430000 55249000 61177000 16592000 9351600 7240200 0 0 0 336460 166890 169560 11198 1992 11660;11661 56481;56482;56483;56484;56485;56486;56487;56488;56489;56490;56491;56492;56493;56494;56495;56496;56497;56498;56499;56500;56501;56502;56503;56504;56505;56506;56507;56508;56509;56510;56511 56632;56633;56634;56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648;56649;56650;56651;56652;56653;56654 56642 773 23 GHVHYLIK WMMIHRILNHSVDKKGHVHYLIKWRDLPYD NHSVDKKGHVHYLIKWRDLPYDQASWESED K G H I K W 0 0 0 0 0 0 0 1 2 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 965.54469 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 636 643 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0068821 69.39 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.373 1.2526 2.8297 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1238 1.2526 NaN 1 0 Median 1.3915 1.2729 2.7519 2 0 Median 1.2549 1.3261 NaN 1 0 Median 1.4523 1.2445 NaN 1 0 Median 8517200 3883200 4634100 0 0 0 0 0 0 3038900 1413800 1625100 1086200 466390 619830 2431400 1273400 1158000 1960700 729560 1231200 11199 246 11662 56512;56513;56514;56515;56516 56655;56656;56657;56658;56659;56660 56658 6 GHVSELEADLAEQQHLR ENMKTESQRVVLQLKGHVSELEADLAEQQH VSELEADLAEQQHLRQQAADDCEFLRAELD K G H L R Q 2 1 0 1 0 2 3 1 2 0 3 0 0 0 0 1 0 0 0 1 0 0 17 0 1930.9497 O00291 O00291 407 423 HIP1 Huntingtin-interacting protein 1 yes yes 3 5.7572E-11 102.38 By matching By MS/MS By matching 1 3 1 0.83209 0.88894 34.476 5 Median NaN NaN NaN 0 0 Median 1.9848 1.7567 NaN 1 0 Median 0.8175 0.87208 12.962 3 2 Median 1.2268 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21711000 12736000 8974900 0 0 0 600680 201570 399110 19962000 12002000 7960400 1148200 532820 615360 0 0 0 0 0 0 11200 1455 11663 56517;56518;56519;56520;56521 56661;56662;56663;56664 56661 4 GHVSLAAELSK KTFEECQQNLMKLQKGHVSLAAELSKETNP KLQKGHVSLAAELSKETNPVVFFDVCADGE K G H S K E 2 0 0 0 0 0 1 1 1 0 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1110.6033 P49792 P49792 3050 3060 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00011634 134.23 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 3 0.99679 0.90843 17.775 12 Median NaN NaN NaN 0 0 Median 1.2535 1.1113 NaN 1 0 Median 1.0042 1.0697 12.52 3 0 Median 0.98964 0.88762 17.038 5 1 Median NaN NaN NaN 0 0 Median 0.91847 0.78696 5.2521 3 0 Median 77209000 37706000 39502000 0 0 0 5866500 2408700 3457800 51558000 25514000 26044000 13841000 6712000 7129100 0 0 0 5943500 3072200 2871300 11201 2401 11664 56522;56523;56524;56525;56526;56527;56528;56529;56530;56531;56532;56533 56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676;56677;56678 56666 14 GHVTQDAPIPGSPLYTIK ADCVSAVYTVLARRRGHVTQDAPIPGSPLY TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R G H I K A 1 0 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 18 0 1892.9996 Q15029 Q15029 855 872 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 6.3945E-19 170.95 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 5 4 9 7 0.66285 0.63015 17.437 27 Median 0.6618 0.64183 NaN 1 0 Median 0.82758 0.709 NaN 1 0 Median 0.55521 0.5971 25.597 5 1 Median 0.78716 0.76485 8.9998 4 0 Linear 0.63562 0.64524 11.859 9 1 Median 0.71062 0.57023 17.91 7 0 Median 198680000 120890000 77790000 8241200 5071800 3169400 1012300 466060 546230 91156000 57891000 33265000 14896000 7894200 7001700 76172000 45262000 30910000 7200400 4303200 2897200 11202 2917 11665 56534;56535;56536;56537;56538;56539;56540;56541;56542;56543;56544;56545;56546;56547;56548;56549;56550;56551;56552;56553;56554;56555;56556;56557;56558;56559;56560 56679;56680;56681;56682;56683;56684;56685;56686;56687;56688;56689;56690;56691;56692;56693;56694;56695;56696;56697;56698;56699;56700 56689 22 GHYEVTGSDDETGK KLKFGTFGGLGSKSKGHYEVTGSDDETGKL KGHYEVTGSDDETGKLQGSGVSLASKKSRL K G H G K L 0 0 0 2 0 0 2 3 1 0 0 1 0 0 0 1 2 0 1 1 0 0 14 0 1493.627 Q09666 Q09666 5834 5847 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0049117 28.632 By MS/MS 2 1.1337 1.0322 11.041 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1337 1.0322 11.041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 593830 293930 299890 0 0 0 0 0 0 0 0 0 593830 293930 299890 0 0 0 0 0 0 11203 2749 11666 56561;56562 56701 56701 1 GHYEVTGSDDETGKLQGSGVSLASK KLKFGTFGGLGSKSKGHYEVTGSDDETGKL ETGKLQGSGVSLASKKSRLSSSSSNDSGNK K G H S K K 1 0 0 2 0 1 2 5 1 0 2 2 0 0 0 4 2 0 1 2 0 0 25 1 2521.1932 Q09666 Q09666 5834 5858 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 4 3.5013E-05 32.72 By matching By MS/MS 1 1 1.213 1.3469 3.801 2 Median 1.2748 1.3836 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1543 1.3112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8122600 3379700 4742900 4005300 1243800 2761500 0 0 0 4117300 2135900 1981400 0 0 0 0 0 0 0 0 0 11204 2749 11667 56563;56564 56702 56702 1 GHYNNVSCAVFHPR WRMNESKAWEVDTCRGHYNNVSCAVFHPRQ RGHYNNVSCAVFHPRQELILSNSEDKSIRV R G H P R Q 1 1 2 0 1 0 0 1 2 0 0 0 0 1 1 1 0 0 1 2 0 0 14 0 1656.7579 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 247 260 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 1.8422E-06 93.011 By MS/MS 2 1.0258 0.86101 16.014 2 Median NaN NaN NaN 0 0 Median 1.0258 0.86101 16.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14444000 7121200 7323100 0 0 0 14444000 7121200 7323100 0 0 0 0 0 0 0 0 0 0 0 0 11205 2473 11668 56565;56566 56703;56704;56705 56705 3 GHYTEGAELVDAVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDAVLD TEGAELVDAVLDVVRKEAESCDCLQGFQLT K G H V R K 2 1 0 2 0 0 2 2 1 0 2 0 0 0 0 0 1 0 1 4 0 0 18 0 1941.9796 P04350;M0R278;M0R1I1;Q9BUF5;K7ESM5;K7EL29;K7ES63 P04350 104 121 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 2;3 0.0047928 45.077 By matching By MS/MS 1 2 1.1997 1.0143 8.7423 3 Plateau NaN NaN NaN 0 0 Median 1.1997 1.0143 NaN 1 0 Median 1.01 1.0125 12.363 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9760300 4522200 5238100 0 0 0 6151000 2748200 3402800 3609300 1774000 1835300 0 0 0 0 0 0 0 0 0 11206 1849;3838 11669 56567;56568;56569 56706;56707 56707 2 GHYTEGAELVDSVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDSVLD TEGAELVDSVLDVVRKEAESCDCLQGFQLT K G H V R K 1 1 0 2 0 0 2 2 1 0 2 0 0 0 0 1 1 0 1 4 0 0 18 0 1957.9745 A0A0B4J269;Q13509;G3V2A3;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 104 121 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 0 442.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 17 7 5 3 16 1.1673 1.0304 29.291 55 Median 1.0035 0.97185 20.517 7 1 Median 1.1336 0.96407 18.716 17 1 Median 1.062 1.0499 7.861 7 0 Median 1.3461 1.1722 59.569 5 0 Median 2.1815 2.2412 9.716 3 0 Median 1.3128 1.1132 9.9016 16 0 Median 2364400000 1111900000 1252500000 62272000 30763000 31508000 1534400000 740810000 793610000 601940000 269070000 332870000 5451500 2658700 2792800 5248000 1908400 3339600 155080000 66734000 88343000 11207 2634;1887;3849;2844;216 11670 56570;56571;56572;56573;56574;56575;56576;56577;56578;56579;56580;56581;56582;56583;56584;56585;56586;56587;56588;56589;56590;56591;56592;56593;56594;56595;56596;56597;56598;56599;56600;56601;56602;56603;56604;56605;56606;56607;56608;56609;56610;56611;56612;56613;56614;56615;56616;56617;56618;56619;56620;56621;56622;56623;56624 56708;56709;56710;56711;56712;56713;56714;56715;56716;56717;56718;56719;56720;56721;56722;56723;56724;56725;56726;56727;56728;56729;56730;56731;56732;56733;56734;56735;56736;56737;56738;56739;56740;56741;56742;56743;56744;56745;56746;56747;56748;56749;56750;56751;56752;56753;56754 56738 47 GHYTEGAELVDSVLDVVRK NFVFGQSGAGNNWAKGHYTEGAELVDSVLD EGAELVDSVLDVVRKEAESCDCLQGFQLTH K G H R K E 1 1 0 2 0 0 2 2 1 0 2 1 0 0 0 1 1 0 1 4 0 0 19 1 2086.0695 A0A0B4J269;Q13509;G3V2A3;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 104 122 TUBB3;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3;4 2.0967E-30 166.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 3 3 5 1.3921 1.3729 25.492 22 Median 1.2123 1.2043 10.923 5 1 Median 1.5038 1.4097 13.797 5 1 Median 1.3368 1.3579 NaN 1 0 Median 1.4505 1.388 5.3578 3 1 Median 1.8453 1.8842 24.686 3 1 Median 1.4277 1.2808 42.184 5 0 Median 315270000 127730000 187540000 73612000 32732000 40880000 62021000 25298000 36724000 22104000 9703800 12400000 66660000 24628000 42032000 22655000 7123300 15532000 68213000 28244000 39969000 11208 2634;1887;3849;2844;216 11671 56625;56626;56627;56628;56629;56630;56631;56632;56633;56634;56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646 56755;56756;56757;56758;56759;56760;56761;56762;56763;56764;56765;56766;56767;56768;56769;56770;56771;56772;56773;56774;56775 56760 19 GIAADGANALLPANR FKEGKYERAIECYTRGIAADGANALLPANR GIAADGANALLPANRAMAYLKIQKYEEAEK R G I N R A 5 1 2 1 0 0 0 2 0 1 2 0 0 0 1 0 0 0 0 0 0 0 15 0 1422.7579 Q9H6T3 Q9H6T3 308 322 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 4.1149E-09 157.24 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.91616 0.83059 13.132 4 Median 0.94013 0.88954 NaN 1 0 Median 0.8928 0.77554 NaN 1 0 Median 0.94347 0.98675 NaN 1 0 Median 0.86647 0.73967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19064000 9726000 9338400 10974000 5662700 5311200 2190200 1188400 1001900 5306000 2542200 2763800 594340 332740 261600 0 0 0 0 0 0 11209 3978 11672 56647;56648;56649;56650 56776;56777;56778 56777 3 GIAEQTVVTLR ALHAAVIAINEAVEKGIAEQTVVTLRNPNA AVEKGIAEQTVVTLRNPNAVLTLVDDNLAP K G I L R N 1 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1185.6717 E7EWC2;F5H7S7;Q13576;D6R939 E7EWC2 178 188 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 0.0001236 120.12 By MS/MS 1 0.76203 0.71525 NaN 1 Median 0.76203 0.71525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12653000 7066200 5586800 12653000 7066200 5586800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11210 901 11673 56651 56779;56780 56779 2 GIAFAFNAK QEAKRTLVGLVRDLRGIAFAFNAKTSFMML LVRDLRGIAFAFNAKTSFMMLFEWIYPSYM R G I A K T 3 0 1 0 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 9 0 937.50215 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 729 737 XPO7 Exportin-7 yes no 2 0.0092157 49.358 By MS/MS 1 1.2172 1.1918 NaN 1 Median 1.2172 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4393100 1916100 2477000 4393100 1916100 2477000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11211 885 11674 56652 56781 56781 1 GIALWGGEK RWSPKGTYLATFHQRGIALWGGEKFKQIQR ATFHQRGIALWGGEKFKQIQRFSHQGVQLI R G I E K F 1 0 0 0 0 0 1 3 0 1 1 1 0 0 0 0 0 1 0 0 0 0 9 0 929.49707 P55884;C9JQN7 P55884 356 364 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0040114 61.999 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2305 1.2359 22.246 5 Median 1.3075 1.2709 3.9554 2 0 Median 1.026 0.86847 NaN 1 0 Median 1.2305 1.3551 NaN 1 1 Median 1.0266 0.86926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27721000 12232000 15490000 12660000 5379200 7281100 10578000 5084600 5492900 3967600 1489300 2478300 515780 278440 237340 0 0 0 0 0 0 11212 2504 11675 56653;56654;56655;56656;56657 56782;56783;56784;56785 56785 4 GIAPGDER LHHSVGTELLSLVYKGIAPGDERQCLPSLD LLSLVYKGIAPGDERQCLPSLDLSCKQLAS K G I E R Q 1 1 0 1 0 0 1 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 8 0 813.39808 P78527 P78527 1490 1497 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.016506 57.281 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.2187 1.0233 10.921 5 Median NaN NaN NaN 0 0 Median 0.98487 0.85484 NaN 1 0 Median 0.7692 0.86299 NaN 1 0 Median 1.2194 1.0585 0.17868 2 0 Median NaN NaN NaN 0 0 Median 1.2353 1.0233 NaN 1 0 Median 2136700 1121800 1014900 0 0 0 461380 268780 192600 851800 468780 383020 432110 188880 243230 0 0 0 391390 195360 196030 11213 2647 11676 56658;56659;56660;56661;56662;56663 56786;56787;56788;56789;56790;56791 56786 6 GIAQMLEK MLYGLIHARYILTNRGIAQMLEKYQQGDFG RYILTNRGIAQMLEKYQQGDFGYCPRVYCE R G I E K Y 1 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 888.47389 Q5SRQ6;P67870;Q5SRQ3;N0E472;A0A0G2JM12 Q5SRQ6 112 119 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta yes no 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 4 1 1 1.1754 1.0758 13.493 13 Median 1.1026 1.0282 32.09 2 0 Median 1.348 1.1625 10.422 2 0 Median 1.1947 1.1208 1.9201 3 0 Plateau 1.3299 1.1029 10.309 4 0 Linear 0.92687 0.94469 NaN 1 0 Median 1.1573 0.95721 NaN 1 0 Median 136670000 62165000 74508000 39471000 17100000 22371000 7913400 3417200 4496200 60945000 27687000 33259000 10506000 4717900 5787900 12456000 6888400 5567200 5382400 2354600 3027700 11214 2628 11677;11678 56664;56665;56666;56667;56668;56669;56670;56671;56672;56673;56674;56675;56676 56792;56793;56794;56795;56796;56797;56798;56799;56800;56801;56802;56803 56799 1294 12 GIASTSDPPTANIKPTPVVSTPSK QRQITLKTTPASGERGIASTSDPPTANIKP TANIKPTPVVSTPSKVTAAAMAGNKSTPRA R G I S K V 2 0 1 1 0 0 0 1 0 2 0 2 0 0 5 4 4 0 0 2 0 0 24 1 2364.2537 P12270 P12270 1657 1680 TPR Nucleoprotein TPR yes yes 3 8.0548E-28 97.253 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 0.52985 0.52223 20.794 10 Median 0.52286 0.5321 16.228 2 0 Median 0.63891 0.61172 23.234 2 1 Median 0.41101 0.47195 5.6066 2 1 Median 0.68017 0.66687 33.711 2 0 Median 0.41451 0.44447 NaN 1 0 Median 0.59956 0.53503 NaN 1 0 Median 208940000 141240000 67705000 46435000 30422000 16013000 29408000 18042000 11366000 108680000 77876000 30802000 18260000 10896000 7363900 5042000 3452100 1589900 1118600 548470 570170 11215 1978 11679 56677;56678;56679;56680;56681;56682;56683;56684;56685;56686 56804;56805;56806;56807;56808;56809;56810;56811;56812;56813;56814;56815;56816;56817;56818 56810 15 GIATNDVGIQK YAAAEVLFHDDGSVKGIATNDVGIQKDGAP GSVKGIATNDVGIQKDGAPKATFERGLELH K G I Q K D 1 0 1 1 0 1 0 2 0 2 0 1 0 0 0 0 1 0 0 1 0 0 11 0 1114.5982 Q16134;D6RAD5 Q16134 213 223 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes no 2 0.00018718 109.71 By MS/MS By MS/MS 2 1 0.82763 0.79572 35.271 3 Median 0.65037 0.67988 22.25 2 0 Median 1.3651 1.1746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6922200 3518400 3403800 3912900 2147600 1765300 3009300 1370800 1638500 0 0 0 0 0 0 0 0 0 0 0 0 11216 2979 11680 56687;56688;56689 56819;56820;56821 56820 3 GIAVMDKEGNVLGHSR SGMNVYMSRSLESIKGIAVMDKEGNVLGHS IAVMDKEGNVLGHSRIAGTKAVRETLASRI K G I S R I 1 1 1 1 0 0 1 3 1 1 1 1 1 0 0 1 0 0 0 2 0 0 16 1 1681.857 Q6P4A7;B1AMV7 Q6P4A7 224 239 SFXN4 Sideroflexin-4 yes no 3 0.0070347 36.638 By MS/MS 1 0.96212 0.95552 NaN 1 Median 0.96212 0.95552 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2858900 1362500 1496400 2858900 1362500 1496400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11217 3158 11681 56690 56822 56822 1 GIAYIEFK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT K G I F K T 1 0 0 0 0 0 1 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 P19338;H7BY16 P19338 430 437 NCL Nucleolin yes no 2 0.0035231 91.041 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 3 4 1.2262 1.1337 12.467 18 Median 1.1311 1.0638 1.9797 4 0 Median 1.2668 1.0858 9.4727 4 1 Median 1.2734 1.2806 7.0028 3 0 Median 1.3383 1.1576 10.923 3 0 Median 1.2262 1.2081 19.204 4 0 Median NaN NaN NaN 0 0 Median 256660000 115770000 140900000 67982000 31487000 36495000 64777000 28972000 35805000 70959000 32808000 38151000 17495000 7449200 10046000 35448000 15050000 20398000 0 0 0 11218 2063 11682 56691;56692;56693;56694;56695;56696;56697;56698;56699;56700;56701;56702;56703;56704;56705;56706;56707;56708 56823;56824;56825;56826;56827;56828;56829;56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844 56826 22 GIAYIEFKTEADAEK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK GIAYIEFKTEADAEKTFEEKQGTEIDGRSI K G I E K T 3 0 0 1 0 0 3 1 0 2 0 2 0 1 0 0 1 0 1 0 0 0 15 1 1683.8356 P19338;H7BY16 P19338 430 444 NCL Nucleolin yes no 2 5.1209E-05 76.143 By MS/MS 1 0.33491 0.34978 NaN 1 Median 0.33491 0.34978 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18869000 14457000 4412100 18869000 14457000 4412100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11219 2063 11683 56709 56845 56845 1 GIAYIEFKTEADAEKTFEEK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK EFKTEADAEKTFEEKQGTEIDGRSISLYYT K G I E K Q 3 0 0 1 0 0 5 1 0 2 0 3 0 2 0 0 2 0 1 0 0 0 20 2 2318.1318 P19338;H7BY16 P19338 430 449 NCL Nucleolin yes no 3 0.0059066 24.3 By MS/MS By matching 1 1 1.0979 1.1717 0.86523 2 Median 1.1109 1.1645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.085 1.1788 NaN 1 0 Median 6664300 3371000 3293300 6395700 3252400 3143300 0 0 0 0 0 0 0 0 0 0 0 0 268590 118650 149940 11220 2063 11684 56710;56711 56846;56847 56847 2 GIDASDYQTVQIFYPSK KEELEPRVFREVTVKGIDASDYQTVQIFYP DASDYQTVQIFYPSKDGTKIPMFIVHKKGI K G I S K D 1 0 0 2 0 2 0 1 0 2 0 1 0 1 1 2 1 0 2 1 0 0 17 0 1930.9313 A0A499FJL1;P48147 A0A499FJL1 363 379 PREP Prolyl endopeptidase yes no 2 0.024122 24.696 By MS/MS 1 0.76669 0.74141 NaN 1 Median 0.76669 0.74141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3208900 1718200 1490700 3208900 1718200 1490700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11221 478 11685 56712 56848 56848 1 GIDFKEDGNILGHK VKFEGDTLVNRIELKGIDFKEDGNILGHKM KGIDFKEDGNILGHKMEYNYNSHNVYIMGD K G I H K M 0 0 1 2 0 0 1 3 1 2 1 2 0 1 0 0 0 0 0 0 0 0 14 1 1541.7838 CON__Q9U6Y5;P37840 P37840 267 280 SNCA Alpha-synuclein no no 2;3 4.041E-23 201.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 11 11 8 10 3 1.2812 1.3085 83.904 55 Median 1.1229 1.046 10.231 14 3 Median 1.1063 1.0083 36.143 10 1 Median 1.3643 1.4264 35.216 11 4 Median 1.8334 1.6792 56.38 8 1 Median 7.1825 7.6714 140.64 9 4 Median 4.2109 3.725 45.76 3 0 Plateau 4129600000 1698300000 2431300000 2045300000 912980000 1132300000 734130000 332890000 401240000 731150000 294140000 437010000 360800000 127090000 233710000 242510000 28084000 214430000 15730000 3122100 12608000 + 11222 2271;795 11686 56713;56714;56715;56716;56717;56718;56719;56720;56721;56722;56723;56724;56725;56726;56727;56728;56729;56730;56731;56732;56733;56734;56735;56736;56737;56738;56739;56740;56741;56742;56743;56744;56745;56746;56747;56748;56749;56750;56751;56752;56753;56754;56755;56756;56757;56758;56759;56760;56761;56762;56763;56764;56765;56766;56767;56768;56769 56849;56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881;56882;56883;56884;56885;56886;56887;56888;56889;56890;56891;56892;56893;56894;56895;56896;56897;56898;56899;56900;56901;56902;56903;56904;56905;56906;56907;56908;56909;56910;56911;56912;56913;56914;56915;56916;56917;56918;56919;56920;56921;56922;56923;56924;56925;56926;56927;56928;56929;56930;56931;56932;56933;56934;56935;56936;56937;56938 56866 90 GIDGVSVTSFSAR VNYTQDLDKVMSAVKGIDGVSVTSFSARTG VKGIDGVSVTSFSARTGNEEQTRINLNCTQ K G I A R T 1 1 0 1 0 0 0 2 0 1 0 0 0 1 0 3 1 0 0 2 0 0 13 0 1294.6517 Q9GZT8;E7EXA3;Q6X734 Q9GZT8 188 200 NIF3L1 NIF3-like protein 1 yes no 2 2.3763E-06 120.06 By MS/MS By MS/MS 1 1 1.087 0.99527 10.1 2 Median 1.0691 1.0689 NaN 1 0 Median 1.1051 0.92667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25263000 12406000 12857000 22539000 10917000 11622000 2724100 1488700 1235400 0 0 0 0 0 0 0 0 0 0 0 0 11223 3916 11687 56770;56771 56939;56940;56941 56940 3 GIDIHGVPYVINVTLPDEK KGDVRFLICTDVAARGIDIHGVPYVINVTL HGVPYVINVTLPDEKQNYVHRIGRVGRAER R G I E K Q 0 0 1 2 0 0 1 2 1 3 1 1 0 0 2 0 1 0 1 3 0 0 19 0 2078.1048 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 497 515 DDX1 ATP-dependent RNA helicase DDX1 yes no 2;3 3.1223E-10 92.307 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 3 2 2 1 1 0.80725 0.77048 19.069 10 Median 0.76999 0.72393 NaN 1 0 Median 0.87695 0.76746 21.559 3 0 Median 0.75894 0.80662 4.269 2 0 Median 0.87136 0.75388 5.0953 2 0 Median 1.0827 1.1111 NaN 1 0 Median 0.70938 0.6219 NaN 1 0 Median 74669000 39614000 35054000 5046100 3003100 2042900 34144000 17514000 16630000 7346100 4089100 3257000 27150000 14479000 12671000 901150 487700 413440 81287 41056 40231 11224 135 11688 56772;56773;56774;56775;56776;56777;56778;56779;56780;56781 56942;56943;56944;56945;56946;56947;56948;56949;56950;56951;56952;56953;56954 56948 13 GIDLLKK LSEKYKKLVLRIPNRGIDLLKKDKSRKRSY LVLRIPNRGIDLLKKDKSRKRSYSPDGKES R G I K K D 0 0 0 1 0 0 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 7 1 785.50109 P43243;A8MXP9;A0A0R4J2E8;D6REM6;B3KM87 P43243 583 589 MATR3 Matrin-3 yes no 2 0.010876 88.734 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20826000 0 20826000 0 0 0 1367900 0 1367900 0 0 0 0 0 0 13504000 0 13504000 5953700 0 5953700 11225 297 11689 56782;56783;56784 56955;56956;56957 56957 3 GIDLTQVK RVFVSPLAKKLAVEKGIDLTQVKGTGPDGR KKLAVEKGIDLTQVKGTGPDGRITKKDIDS K G I V K G 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 0 872.49673 P10515;H0YDD4;E9PEJ4 P10515 369 376 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.011633 56.547 By MS/MS 1 1.6434 1.3761 NaN 1 Median NaN NaN NaN 0 0 Median 1.6434 1.3761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12228000 4021200 8206600 0 0 0 12228000 4021200 8206600 0 0 0 0 0 0 0 0 0 0 0 0 11226 1938 11690 56785 56958 56958 1 GIDPFSLDALSK VCGDSDKGFVVINQKGIDPFSLDALSKEGI NQKGIDPFSLDALSKEGIVALRRAKRRNME K G I S K E 1 0 0 2 0 0 0 1 0 1 2 1 0 1 1 2 0 0 0 0 0 0 12 0 1261.6554 P40227 P40227 296 307 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.00089741 59.542 By MS/MS By MS/MS By matching By matching By matching 2 3 1 2 4 1.1093 1.0327 15.985 12 Median 1.0725 0.9953 6.4113 2 0 Median 1.0874 0.91486 3.0131 3 0 Median 0.91878 1.024 NaN 1 0 Median 1.169 0.99603 15.143 2 0 Median 1.2461 1.2325 12.041 4 0 Median NaN NaN NaN 0 0 Median 114180000 53325000 60854000 65502000 30436000 35066000 39336000 18702000 20634000 828100 423150 404950 802120 348440 453680 7710600 3415900 4294700 0 0 0 11227 2285 11691 56786;56787;56788;56789;56790;56791;56792;56793;56794;56795;56796;56797 56959;56960;56961;56962;56963 56962 5 GIDPFSLDSLAK VCAQSNKGFVVINQKGIDPFSLDSLAKHGI NQKGIDPFSLDSLAKHGIVALRRAKRRNME K G I A K H 1 0 0 2 0 0 0 1 0 1 2 1 0 1 1 2 0 0 0 0 0 0 12 0 1261.6554 Q92526 Q92526 296 307 CCT6B T-complex protein 1 subunit zeta-2 yes yes 2 0.001379 53.683 By MS/MS By MS/MS 1 1 1.0781 0.97453 8.9348 2 Median NaN NaN NaN 0 0 Median 1.0874 0.91486 NaN 1 0 Median 1.0689 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20492000 9237700 11254000 0 0 0 7634900 3651500 3983400 12857000 5586200 7270800 0 0 0 0 0 0 0 0 0 11228 3532 11692 56798;56799 56964;56965 56965 2 GIDRYNPENLATLER AMFEQMRANVGKLLKGIDRYNPENLATLER GIDRYNPENLATLERYVETQAKENAYDLEA K G I E R Y 1 2 2 1 0 0 2 1 0 1 2 0 0 0 1 0 1 0 1 0 0 0 15 1 1759.8853 K7ES31;K7ERF1;Q9UBQ5 K7ES31 17 31 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 2;3 2.4761E-09 162.32 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 1 1 1 1.0188 0.99033 26.212 10 Median 1.1345 1.2127 21.274 2 0 Median 0.96367 0.8432 19.63 5 0 Median 1.0662 1.1055 NaN 1 0 Median 1.1452 1.0254 NaN 1 0 Median 1.1058 1.2427 NaN 1 0 Median NaN NaN NaN 0 0 Median 103410000 51044000 52366000 85687000 42434000 43253000 8105600 4029500 4076100 4452800 2325400 2127400 756490 347920 408570 4407900 1907100 2500800 0 0 0 11229 1399 11693 56800;56801;56802;56803;56804;56805;56806;56807;56808;56809 56966;56967;56968;56969;56970;56971;56972;56973;56974 56969 9 GIDSDDVQDNSQLK RSGRISSTPTTETIRGIDSDDVQDNSQLKA RGIDSDDVQDNSQLKASTQKAANLSEKHSL R G I L K A 0 0 1 4 0 2 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 14 0 1532.6954 A0A075B754;Q96QE3 A0A075B754 611 624 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.00058048 66.595 By MS/MS By MS/MS 1 1 1.0971 1.1047 7.0331 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94358 1.0511 NaN 1 0 Median 1.2756 1.161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5725600 3042000 2683600 0 0 0 0 0 0 4776100 2619300 2156800 949550 422740 526810 0 0 0 0 0 0 11230 10 11694 56810;56811 56975;56976 56975 2 GIDVQQVSLVINYDLPTNR SGSSRVLITTDLLARGIDVQQVSLVINYDL QQVSLVINYDLPTNRENYIHRIGRGGRFGR R G I N R E 0 1 2 2 0 2 0 1 0 2 2 0 0 0 1 1 1 0 1 3 0 0 19 0 2143.1273 P60842;Q14240;E7EQG2 P60842 335 353 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2;3 9.723E-18 130.07 By matching By MS/MS By MS/MS 1 6 2 0.87793 0.76455 19.756 9 Median 0.72697 0.72331 NaN 1 0 Median 0.86981 0.7567 19.079 6 0 Median 1.0243 1.0216 16.008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63797000 32837000 30960000 496010 251810 244190 49641000 25944000 23698000 13660000 6641900 7018000 0 0 0 0 0 0 0 0 0 11231 2529;2867 11695 56812;56813;56814;56815;56816;56817;56818;56819;56820 56977;56978;56979;56980;56981;56982;56983;56984;56985;56986;56987 56983 11 GIDYDFPSLILQK FKKKERLLRKKLAKKGIDYDFPSLILQKTE KKGIDYDFPSLILQKTESISKTNRQTSTKG K G I Q K T 0 0 0 2 0 1 0 1 0 2 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1507.7922 Q9BYG3;C9J808;C9J6C5 Q9BYG3 180 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.0091208 36.693 By MS/MS By matching 3 2 0.97091 0.9127 22.366 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97091 0.97158 28.255 3 0 Plateau 1.1422 0.94171 9.4166 2 0 Median 15460000 7766100 7693800 0 0 0 0 0 0 0 0 0 0 0 0 11536000 6047600 5488100 3924300 1718500 2205800 11232 3891 11696 56821;56822;56823;56824;56825 56988 56988 1 GIDYDKLIVR EDFVDPWTVQTSSAKGIDYDKLIVRFGSSK TSSAKGIDYDKLIVRFGSSKIDKELINRIE K G I V R F 0 1 0 2 0 0 0 1 0 2 1 1 0 0 0 0 0 0 1 1 0 0 10 1 1190.6659 P23381;G3V3Y5;G3V3H8;G3V277;G3V3P2;G3V456;G3V5U1;G3V227;G3V423;G3V3X0;G3V2Y7;G3V3S7;G3V5W1 P23381 97 106 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2;3 0.0061168 83.005 By MS/MS 2 1.3845 1.38 NaN 1 Median 1.3845 1.38 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13663000 4781100 8881500 13663000 4781100 8881500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11233 2111 11697 56826;56827 56989;56990 56989 2 GIEDIIVSK FKNYTIFEKKFGDRRGIEDIIVSKRRFQYE KFGDRRGIEDIIVSKRRFQYEEEVKANPHN R G I S K R 0 0 0 1 0 0 1 1 0 3 0 1 0 0 0 1 0 0 0 1 0 0 9 0 972.54916 Q5JY65;Q9BZJ0 Q5JY65 455 463 CRNKL1 Crooked neck-like protein 1 yes no 2 0.024906 37.727 By MS/MS By matching 1 1 0.99596 0.94951 0.34272 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91959 0.95182 NaN 1 0 Median 1.0787 0.94722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7309400 3508600 3800800 0 0 0 0 0 0 6917500 3332100 3585400 391890 176510 215380 0 0 0 0 0 0 11234 3061 11698 56828;56829 56991;56992 56992 2 GIEFEDESSDR SESSEEFLEEEPEQRGIEFEDESSDRDARP PEQRGIEFEDESSDRDARPALETQPQQEKQ R G I D R D 0 1 0 2 0 0 3 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 11 0 1282.5313 D6RB01;Q9Y6X4 D6RB01 331 341 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 0.0001932 107.15 By MS/MS 1 0.93816 1.0054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93816 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3793600 2016500 1777100 0 0 0 0 0 0 3793600 2016500 1777100 0 0 0 0 0 0 0 0 0 11235 814 11699 56830 56993 56993 1 GIEFEDESSDRDARPALETQPQQEK SESSEEFLEEEPEQRGIEFEDESSDRDARP RDARPALETQPQQEKQDGEKESELEPMNGE R G I E K Q 2 2 0 3 0 3 5 1 0 1 1 1 0 1 2 2 1 0 0 0 0 0 25 2 2874.3268 D6RB01;Q9Y6X4 D6RB01 331 355 FAM169A Soluble lamin-associated protein of 75 kDa yes no 4 0.01121 18 By MS/MS 1 0.69 0.81187 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69 0.81187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18526000 10019000 8506800 0 0 0 0 0 0 18526000 10019000 8506800 0 0 0 0 0 0 0 0 0 11236 814 11700 56831 56994;56995 56994 2 GIEGTVPYVTTDYNFK VGAIAIPHCVLKCQRGIEGTVPYVTTDYNF IEGTVPYVTTDYNFKLPGASEKIGAREPEE R G I F K L 0 0 1 1 0 0 1 2 0 1 0 1 0 1 1 0 3 0 2 2 0 0 16 0 1802.8727 Q5SY16 Q5SY16 655 670 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 1.2685E-06 91.313 By MS/MS By matching By MS/MS By matching 2 1 3 1 1.013 1.0106 8.9674 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9262 0.96833 6.0399 2 0 Median 1.1375 0.98865 NaN 1 0 Median 1.0216 1.0564 2.8287 3 0 Plateau 1.48 1.2378 NaN 1 0 Median 29913000 14782000 15131000 0 0 0 0 0 0 23341000 11688000 11654000 653310 310270 343040 5605500 2566600 3038900 312850 217740 95114 11237 3077 11701 56832;56833;56834;56835;56836;56837;56838 56996;56997;56998;56999;57000 56998 5 GIEILLEK KSLIPTLEKTKSTSKGIEILLEKLST____ KTKSTSKGIEILLEKLST____________ K G I E K L 0 0 0 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 913.54843 Q15397;S4R3K8 Q15397 638 645 KIAA0020 Pumilio domain-containing protein KIAA0020 yes no 2 0.0078694 65.252 By matching By MS/MS By matching 1 1 2 1.1287 1.0521 54.828 4 Median NaN NaN NaN 0 0 Median 0.3844 0.36453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0638 1.095 NaN 1 0 Median 1.2686 1.0806 9.4331 2 0 Median 6902600 3131100 3771500 0 0 0 339140 222300 116840 0 0 0 0 0 0 6184300 2743300 3441000 379220 165540 213680 11238 2947 11702 56839;56840;56841;56842 57001 57001 1 GIEILTDMSR HPTIISESFQKALEKGIEILTDMSRPVELS KALEKGIEILTDMSRPVELSDRETLLNSAT K G I S R P 0 1 0 1 0 0 1 1 0 2 1 0 1 0 0 1 1 0 0 0 0 0 10 0 1133.5751 P50991 P50991 144 153 CCT4 T-complex protein 1 subunit delta yes yes 2 0.0031972 57.59 By matching By matching By MS/MS By matching 1 1 1 1 1.3073 1.3492 33.336 4 Median 1.3572 1.3769 NaN 1 0 Median 1.3838 1.7067 NaN 1 0 Median 1.2593 1.3222 NaN 1 0 Median 0.89254 0.77876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4120600 1704400 2416200 1139900 498170 641720 80415 31714 48701 2495500 1006700 1488900 404760 167820 236940 0 0 0 0 0 0 11239 2424 11703 56843;56844;56845;56846 57002 57002 1 GIEILTDMSRPVELSDR HPTIISESFQKALEKGIEILTDMSRPVELS EILTDMSRPVELSDRETLLNSATTSLNSKV K G I D R E 0 2 0 2 0 0 2 1 0 2 2 0 1 0 1 2 1 0 0 1 0 0 17 1 1929.983 P50991 P50991 144 160 CCT4 T-complex protein 1 subunit delta yes yes 3 6.7766E-06 64.136 By MS/MS By MS/MS By MS/MS 3 2 1 0.99077 0.97613 21.985 5 Median 0.82653 0.82519 23.756 2 0 Median 1.0495 0.92806 17.264 2 0 Median 1.14 1.2313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90177000 44236000 45941000 20771000 9900300 10870000 53006000 26941000 26065000 16400000 7394300 9005900 0 0 0 0 0 0 0 0 0 11240 2424 11704 56847;56848;56849;56850;56851;56852 57003;57004;57005;57006;57007;57008 57007 6 GIEILTDMSRPVELSDRETLLNSATTSLNSK HPTIISESFQKALEKGIEILTDMSRPVELS RETLLNSATTSLNSKVVSQYSSLLSPMSVN K G I S K V 1 2 2 2 0 0 3 1 0 2 5 1 1 0 1 5 4 0 0 1 0 0 31 2 3389.7348 P50991 P50991 144 174 CCT4 T-complex protein 1 subunit delta yes yes 4 0.0017006 29.859 By MS/MS By MS/MS By MS/MS 1 2 2 0.87596 1.0371 9.6927 5 Median 0.87227 0.88058 NaN 1 0 Median 0.85927 0.98971 8.4389 2 0 Median 1.0135 1.0775 5.4074 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35567000 17308000 18259000 15833000 8274200 7558600 10264000 4580100 5684000 9470100 4454000 5016100 0 0 0 0 0 0 0 0 0 11241 2424 11705 56853;56854;56855;56856;56857 57009;57010;57011;57012;57013 57010 5 GIEKPPFELPDFIKR PRHWCFKRKYLQGKRGIEKPPFELPDFIKR GIEKPPFELPDFIKRTGIQEMREALQEKEE R G I K R T 0 1 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 15 2 1784.9825 Q13435;E9PPJ0 Q13435 516 530 SF3B2 Splicing factor 3B subunit 2 yes no 4 0.029537 18.138 By matching By matching By MS/MS 1 1 2 0.67704 0.78454 12.211 4 Median 0.85713 0.97425 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70942 0.80836 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63962 0.75284 1.6031 2 0 Median NaN NaN NaN 0 0 Median 5606200 3387400 2218800 486550 204860 281690 0 0 0 1994600 1233100 761460 0 0 0 3125100 1949400 1175700 0 0 0 11242 2817 11706 56858;56859;56860;56861 57014 57014 1 GIEMSEVR SHYYHMAHGKDFASRGIEMSEVRLNLDKMM GKDFASRGIEMSEVRLNLDKMMEQKSTAVK R G I V R L 0 1 0 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 8 0 919.44332 E9PEX6;P09622 E9PEX6 87 94 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.0028236 104.45 By MS/MS 1 0.86376 0.84974 NaN 1 Median 0.86376 0.84974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4793100 2373700 2419300 4793100 2373700 2419300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11243 915 11707 56862 57015;57016 57015 2 GIEPTGNMVK LKPKLNPKKARAYGRGIEPTGNMVKQPAKF RAYGRGIEPTGNMVKQPAKFTVDTISAGQG R G I V K Q 0 0 1 0 0 0 1 2 0 1 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1044.5274 O75369;E7EN95 O75369 263 272 FLNB Filamin-B yes no 2 0.025713 35.445 By MS/MS By matching By matching 2 1 1 0.98718 0.9847 14.675 4 Median 0.97169 0.94687 25.107 2 0 Median 1.0981 0.98021 NaN 1 0 Median 0.88746 0.98921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42509000 20045000 22463000 8430800 3911600 4519100 31562000 14826000 16736000 2515800 1308000 1207800 0 0 0 0 0 0 0 0 0 11244 1664 11708 56863;56864;56865;56866 57017 57017 1 GIEQAVQSHAVAEEEAR DNFTLDINTAYARLRGIEQAVQSHAVAEEE EQAVQSHAVAEEEARKAHQLWLSVEALKYS R G I A R K 4 1 0 0 0 2 4 1 1 1 0 0 0 0 0 1 0 0 0 2 0 0 17 0 1822.881 Q16891;B9A067;C9J406;H7C463 Q16891 548 564 IMMT MICOS complex subunit MIC60 yes no 2;3 3.633E-48 169.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 4 1.1313 0.94805 35.411 10 Median 0.69598 0.65817 NaN 1 1 Median 1.1313 0.97906 0.91768 2 0 Median NaN NaN NaN 0 0 Median 1.2739 1.0974 0.24748 2 0 Median 0.33472 0.33563 NaN 1 1 Median 1.1094 0.89466 7.1465 4 1 Median 102650000 58337000 44314000 26403000 13415000 12988000 14922000 7997900 6924000 0 0 0 6483100 2696600 3786400 31670000 23234000 8435500 23173000 10993000 12180000 11245 3001 11709 56867;56868;56869;56870;56871;56872;56873;56874;56875;56876 57018;57019;57020;57021;57022;57023;57024;57025;57026;57027;57028;57029 57018 11 GIEQAVQSHAVAEEEARK DNFTLDINTAYARLRGIEQAVQSHAVAEEE QAVQSHAVAEEEARKAHQLWLSVEALKYSM R G I R K A 4 1 0 0 0 2 4 1 1 1 0 1 0 0 0 1 0 0 0 2 0 0 18 1 1950.9759 Q16891;B9A067;C9J406;H7C463 Q16891 548 565 IMMT MICOS complex subunit MIC60 yes no 4 0.013964 19.292 By MS/MS 1 1.2663 1.2976 NaN 1 Median 1.2663 1.2976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2998000 1440900 1557000 2998000 1440900 1557000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11246 3001 11710 56877 57030 57030 1 GIETDGSNLSGVSAK TIFEIDPHLQERVDKGIETDGSNLSGVSAK GIETDGSNLSGVSAKCAWDDLSRPPEDDED K G I A K C 1 0 1 1 0 0 1 3 0 1 1 1 0 0 0 3 1 0 0 1 0 0 15 0 1433.6998 Q9UMX1 Q9UMX1 258 272 SUFU Suppressor of fused homolog yes yes 2 1.43E-07 97.214 By MS/MS By MS/MS 1 1 1.382 1.2999 15.534 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1325 1.1647 NaN 1 0 Median 1.6864 1.4508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516000 1336600 2179400 0 0 0 0 0 0 1897800 744200 1153600 1618100 592410 1025700 0 0 0 0 0 0 11247 4336 11711 56878;56879 57031;57032 57032 2 GIFEPFGR YVGSLHFNITEDMLRGIFEPFGRIESIQLM ITEDMLRGIFEPFGRIESIQLMMDSETGRS R G I G R I 0 1 0 0 0 0 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 8 0 921.47085 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;A0A0U1RQW2 Q14498 268 275 RBM39 RNA-binding protein 39 yes no 2 0.0040847 83.614 By MS/MS By MS/MS By MS/MS By matching 2 2 4 4 0.9289 0.9103 9.1674 12 Median 0.92723 0.98238 6.498 2 0 Median NaN NaN NaN 0 0 Median 0.84847 0.8544 12.077 2 0 Median NaN NaN NaN 0 0 Median 0.88595 0.9103 10.628 4 0 Median 1.0487 0.88578 6.9739 4 0 Median 61416000 31235000 30181000 2783400 1427900 1355500 0 0 0 39446000 19845000 19601000 0 0 0 17684000 9233700 8449800 1503400 728370 775050 11248 2879 11712 56880;56881;56882;56883;56884;56885;56886;56887;56888;56889;56890;56891 57033;57034;57035;57036;57037;57038;57039;57040;57041;57042;57043 57036 11 GIFFSHR IERATGQRPHHFLRRGIFFSHRDMNQVLDA RPHHFLRRGIFFSHRDMNQVLDAYENKKPF R G I H R D 0 1 0 0 0 0 0 1 1 1 0 0 0 2 0 1 0 0 0 0 0 0 7 0 862.44497 P23381;G3V3Y5;G3V3H8;G3V277;G3V3P2;G3V456;G3V5U1;G3V227;G3V423;G3V2Y7 P23381 135 141 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 0.007586 88.734 By MS/MS 1 1.5851 1.3346 NaN 1 Median NaN NaN NaN 0 0 Median 1.5851 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8979500 3352700 5626800 0 0 0 8979500 3352700 5626800 0 0 0 0 0 0 0 0 0 0 0 0 11249 2111 11713 56892 57044 57044 1 GIFGSSAVPQPK ISDDVIVGRCLAILKGIFGSSAVPQPKETV ILKGIFGSSAVPQPKETVVSRWRADPWARG K G I P K E 1 0 0 0 0 1 0 2 0 1 0 1 0 1 2 2 0 0 0 1 0 0 12 0 1186.6346 O60341;R4GMQ1;R4GMP9 O60341 733 744 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.00058883 73.233 By matching By MS/MS By matching 1 1 1 0.93867 0.9879 7.2357 3 Median 0.93867 0.9879 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8157 0.88842 NaN 1 0 Median 1.2029 1.0202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19924000 11263000 8660300 4922500 2633200 2289400 0 0 0 13019000 7635500 5383900 1981800 994700 987050 0 0 0 0 0 0 11250 1613 11714 56893;56894;56895 57045;57046 57046 2 GIFNGFSVTLK DLVKCRMQVDPQKYKGIFNGFSVTLKEDGV QKYKGIFNGFSVTLKEDGVRGLAKGWAPTF K G I L K E 0 0 1 0 0 0 0 2 0 1 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1181.6445 Q00325;F8VVM2;F8VZL5;F8VWR4;F8VWQ0 Q00325 102 112 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.0015464 58.433 By MS/MS By MS/MS By matching 2 1 1 1.0798 1.0718 18.628 4 Median 0.97784 0.98426 0.6386 2 0 Median 1.6338 1.4586 NaN 1 0 Median 1.1909 1.1618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42945000 19612000 23333000 9868100 6707300 3160900 32554000 12663000 19891000 522950 241990 280960 0 0 0 0 0 0 0 0 0 11251 2674 11715 56896;56897;56898;56899 57047;57048;57049 57048 3 GIFNGFSVTLKEDGVR DLVKCRMQVDPQKYKGIFNGFSVTLKEDGV IFNGFSVTLKEDGVRGLAKGWAPTFLGYSM K G I V R G 0 1 1 1 0 0 1 3 0 1 1 1 0 2 0 1 1 0 0 2 0 0 16 1 1737.905 Q00325;F8VVM2;F8VZL5;F8VWR4;F8VWQ0 Q00325 102 117 SLC25A3 Phosphate carrier protein, mitochondrial yes no 3 0.0028347 28.212 By MS/MS 1 1.2726 1.3084 NaN 1 Median 1.2726 1.3084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4123400 1962900 2160500 4123400 1962900 2160500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11252 2674 11716 56900 57050 57050 1 GIFPVLCKDPVQEAWAEDVDLR VTRNPQTARQAHLYRGIFPVLCKDPVQEAW KDPVQEAWAEDVDLRVNFAMNVGKARGFFK R G I L R V 2 1 0 3 1 1 2 1 0 1 2 1 0 1 2 0 0 1 0 3 0 0 22 1 2556.2683 P14618;B4DNK4 P14618 468 489 PKM Pyruvate kinase PKM;Pyruvate kinase no no 3 0.00025847 27.72 By MS/MS By MS/MS 1 1 0.84731 0.81801 13.927 2 Median 0.89015 0.90267 NaN 1 0 Median 0.80654 0.7413 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3704300 1878800 1825500 2003600 1101300 902340 1700600 777450 923160 0 0 0 0 0 0 0 0 0 0 0 0 11253 2005 11717 56901;56902 57051;57052 57051 2 GIFTSEIGTK LAKLYRSIGEYDVLRGIFTSEIGTKQITQS YDVLRGIFTSEIGTKQITQSALLAEARSDY R G I T K Q 0 0 0 0 0 0 1 2 0 2 0 1 0 1 0 1 2 0 0 0 0 0 10 0 1051.555 P78527 P78527 2941 2950 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.1436E-05 135.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 2 1.3876 1.2793 13.652 14 Median 1.0829 1.0669 2.0022 2 1 Median 1.458 1.3048 4.3689 3 0 Median 0.97894 1.0537 19.41 3 0 Median 1.5439 1.4749 0.12993 2 0 Median 1.1284 1.1688 11.231 2 1 Median 1.6242 1.3637 7.4956 2 0 Median 562510000 270240000 292270000 141420000 66318000 75107000 63916000 25388000 38528000 282830000 144840000 137990000 28671000 11564000 17107000 36730000 18559000 18171000 8938600 3568800 5369700 11254 2647 11718 56903;56904;56905;56906;56907;56908;56909;56910;56911;56912;56913;56914;56915;56916 57053;57054;57055;57056;57057;57058;57059;57060;57061;57062;57063;57064;57065;57066;57067;57068;57069;57070;57071;57072;57073 57053 21 GIGAGGSITGLK MLWNFGIKDKPTFIKGIGAGGSITGLKFNP FIKGIGAGGSITGLKFNPLNTNQFYASSME K G I L K F 1 0 0 0 0 0 0 5 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1029.5819 Q92466;A0A087X0X5;A0A087WYT8 Q92466 152 163 DDB2 DNA damage-binding protein 2 yes no 2 3.5815E-06 107.79 By matching By matching By MS/MS By MS/MS 1 1 4 3 0.84305 0.82411 39.998 7 Median 0.61002 0.60541 NaN 1 0 Median 1.1851 1.0784 NaN 1 0 Median 0.77059 0.80478 32.817 3 0 Median 1.3453 1.1775 44.908 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 195280000 88429000 106850000 1349600 762810 586790 758130 447800 310340 94333000 53360000 40972000 98837000 33858000 64980000 0 0 0 0 0 0 11255 3527 11719 56917;56918;56919;56920;56921;56922;56923;56924;56925 57074;57075;57076;57077;57078;57079;57080 57078 7 GIGEFFR GGNPVCVRPTPKWQKGIGEFFRLSPKDSEK RPTPKWQKGIGEFFRLSPKDSEKENQIPEE K G I F R L 0 1 0 0 0 0 1 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 7 0 824.41809 H0YMA4;A0A0U1RQM0;Q15004;H0YKX3 H0YMA4 64 70 KIAA0101 PCNA-associated factor yes no 2 0.012717 77.748 By matching By matching By MS/MS 1 1 1 1.0212 1.0202 3.8751 3 Median 1.0212 1.0202 NaN 1 0 Median 1.2144 1.0444 NaN 1 0 Median 0.95477 0.96826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8933700 4652700 4280900 1754600 723110 1031500 84241 32869 51372 7094800 3896800 3198100 0 0 0 0 0 0 0 0 0 11256 302 11720 56926;56927;56928 57081;57082 57082 2 GIGFLTSGWR RGPRSFRGRKGRGAKGIGFLTSGWRFVQIK GRGAKGIGFLTSGWRFVQIKEMVPEFVVPD K G I W R F 0 1 0 0 0 0 0 3 0 1 1 0 0 1 0 1 1 1 0 0 0 0 10 0 1092.5716 Q8IXM3 Q8IXM3 40 49 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 2.8076E-05 143.89 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3377 1.2119 23.604 4 Median 1.1356 1.0993 NaN 1 0 Median 1.5758 1.3359 NaN 1 0 Median 1.039 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.654 1.7682 NaN 1 0 Median NaN NaN NaN 0 0 Median 52988000 24874000 28114000 41438000 19637000 21801000 4207300 1640200 2567100 6957100 3462900 3494300 0 0 0 385860 134710 251150 0 0 0 11257 3334 11721 56929;56930;56931;56932 57083;57084;57085;57086;57087 57084 5 GIGGIFFDDLDSPSKEEVFR WCDDYFFIAHRGERRGIGGIFFDDLDSPSK FFDDLDSPSKEEVFRFVQSCARAVVPSYIP R G I F R F 0 1 0 3 0 0 2 3 0 2 1 1 0 3 1 2 0 0 0 1 0 0 20 1 2227.0797 P36551 P36551 333 352 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 3 0.018176 17.595 By MS/MS By MS/MS By matching 1 1 1 0.90726 1.0127 10.373 3 Median 0.79813 0.8541 NaN 1 0 Median 1.0802 1.0127 NaN 1 0 Median 0.90726 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5773900 2906000 2867900 1577000 850990 725970 3047300 1465200 1582000 1149700 589770 559910 0 0 0 0 0 0 0 0 0 11258 2259 11722 56933;56934;56935 57088;57089;57090 57089 3 GIGHTTGKPLHFK PKTAENFRALCTGEKGIGHTTGKPLHFKGC EKGIGHTTGKPLHFKGCPFHRIIKKFMIQG K G I F K G 0 0 0 0 0 0 0 3 2 1 1 2 0 1 1 0 2 0 0 0 0 0 13 1 1391.7674 Q08752 Q08752 57 69 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 3 0.010331 26.627 By MS/MS By matching 1 1 1.1631 1.1565 20.58 2 Median NaN NaN NaN 0 0 Median 1.102 0.99989 NaN 1 0 Median 1.2276 1.3377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2443300 1132800 1310600 0 0 0 1461400 689030 772390 981910 443730 538190 0 0 0 0 0 0 0 0 0 11259 2742 11723 56936;56937 57091;57092 57092 2 GIGIHHGGLLPILK KKLPQVEHVLPLLKRGIGIHHGGLLPILKE RGIGIHHGGLLPILKETIEILFSEGLIKAL R G I L K E 0 0 0 0 0 0 0 4 2 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1423.8664 P42285 P42285 451 464 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.00023057 58.172 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 0.99273 0.91864 13.412 5 Median 1.1931 1.179 NaN 1 0 Median 0.99803 0.86056 NaN 1 0 Median 0.87953 0.95436 5.3943 2 0 Median 0.99273 0.84899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25778000 13193000 12585000 3311300 1653100 1658200 3740200 1835500 1904700 16026000 8398900 7627000 2700200 1305200 1395000 0 0 0 0 0 0 11260 2309 11724 56938;56939;56940;56941;56942 57093;57094;57095;57096;57097 57093 5 GIGLAIVR MSSGIHVALVTGGNKGIGLAIVRDLCRLFS LVTGGNKGIGLAIVRDLCRLFSGDVVLTAR K G I V R D 1 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 797.51232 P16152;E9PQ63;A8MTM1 P16152 16 23 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.013626 71.949 By MS/MS By MS/MS 1 2 1.5217 1.4243 10.354 3 Median 1.5217 1.4243 NaN 1 1 Median 1.5965 1.3203 13.269 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24445000 4833500 19612000 17670000 3548500 14122000 6774700 1285000 5489700 0 0 0 0 0 0 0 0 0 0 0 0 11261 2025 11725 56943;56944;56945 57098;57099;57100 57098 3 GIGMGNIGPAGMGMEGIGFGINK LGPGGQPIDANHLNKGIGMGNIGPAGMGME PAGMGMEGIGFGINKMGGMEGPFGGGMENM K G I N K M 1 0 2 0 0 0 1 9 0 4 0 1 3 1 1 0 0 0 0 0 0 0 23 0 2177.0432 A0A087X0X3;P52272;M0QYL3;M0QZM1 A0A087X0X3 323 345 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2;3 1.1533E-22 98.439 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 10 6 13 7 0.86231 0.80264 23.555 40 Median 1.2356 1.2019 12.745 3 0 Median 0.85959 0.76565 NaN 1 0 Median 0.76918 0.82262 23.091 10 0 Median 1.0362 0.89666 10.672 6 0 Median 0.71483 0.7529 15.827 13 1 Median 1.204 1.0261 11.064 7 0 Median 248230000 142690000 105540000 4636800 2207600 2429200 501720 237030 264690 99531000 54410000 45121000 1151300 541510 609830 139240000 83886000 55352000 3170600 1408400 1762100 11262 116;1423 11726;11727 56946;56947;56948;56949;56950;56951;56952;56953;56954;56955;56956;56957;56958;56959;56960;56961;56962;56963;56964;56965;56966;56967;56968;56969;56970;56971;56972;56973;56974;56975;56976;56977;56978;56979;56980;56981;56982;56983;56984;56985 57101;57102;57103;57104;57105;57106;57107;57108;57109;57110;57111;57112;57113;57114;57115;57116;57117;57118;57119;57120;57121;57122 57120 43;44;45 22 GIGTDEFTLNR NTPAFLAERLHRALKGIGTDEFTLNRIMVS RALKGIGTDEFTLNRIMVSRSEIDLLDIRT K G I N R I 0 1 1 1 0 0 1 2 0 1 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1221.599 P12429;D6RA82 P12429 264 274 ANXA3 Annexin A3;Annexin yes no 2 0.00016096 90.629 By MS/MS 1 0.90106 0.74936 NaN 1 Median NaN NaN NaN 0 0 Median 0.90106 0.74936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11666000 7015400 4650800 0 0 0 11666000 7015400 4650800 0 0 0 0 0 0 0 0 0 0 0 0 11263 1981 11728 56986 57123;57124 57124 2 GIGTLHLKPTANQK KCKLFYKKDNEFKEKGIGTLHLKPTANQKT KGIGTLHLKPTANQKTQLLVRADTNLGNIL K G I Q K T 1 0 1 0 0 1 0 2 1 1 2 2 0 0 1 0 2 0 0 0 0 0 14 1 1476.8413 Q9UKX7;B0QY21 Q9UKX7 377 390 NUP50 Nuclear pore complex protein Nup50 yes no 3 0.0016502 37.55 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 0.91435 0.88288 19.422 7 Median 0.91435 0.87113 NaN 1 0 Median 1.2046 1.1354 NaN 1 0 Median 0.84312 0.88288 NaN 1 0 Median 1.2455 1.2449 NaN 1 0 Median 0.72741 0.77069 4.0568 2 0 Median 1.2254 1.0921 NaN 1 0 Median 20502000 9297200 11204000 1889500 1243500 646040 1172300 557550 614730 4971300 2189600 2781700 2361400 812310 1549100 7856600 3649300 4207300 2250500 844950 1405600 11264 4317 11729 56987;56988;56989;56990;56991;56992;56993 57125;57126;57127 57127 2 GIGTPPNTTPIK GAHDAKLRFESQEMKGIGTPPNTTPIKNGS EMKGIGTPPNTTPIKNGSPEIKLKITKTYM K G I I K N 0 0 1 0 0 0 0 2 0 2 0 1 0 0 3 0 3 0 0 0 0 0 12 0 1194.6608 O96028;D6RIS1;D6R9V2 O96028 107 118 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.012255 55.549 By MS/MS 1 0.053855 0.05577 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.053855 0.05577 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6837000 6255700 581290 0 0 0 0 0 0 6837000 6255700 581290 0 0 0 0 0 0 0 0 0 11265 1810 11730 56994 57128 57128 1 GIHDAFVK TGQTCVCSNQFLVQRGIHDAFVKAFAEAMK NQFLVQRGIHDAFVKAFAEAMKKNLRVGNG R G I V K A 1 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 885.47085 P51649;C9J8Q5 P51649 351 358 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 2 0.011633 56.547 By matching By MS/MS 1 1 1.1825 1.0886 48.368 2 Median 0.7852 0.77328 NaN 1 0 Median 1.7808 1.5325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2706600 1092200 1614400 857960 511720 346240 1848600 580450 1268200 0 0 0 0 0 0 0 0 0 0 0 0 11266 2439 11731 56995;56996 57129 57129 1 GIHHGPSVAQPIHLDSTQLSR SKIEWDYECEPGMVKGIHHGPSVAQPIHLD SVAQPIHLDSTQLSRKFISDYLWSLVDTEW K G I S R K 1 1 0 1 0 2 0 2 3 2 2 0 0 0 2 3 1 0 0 1 0 0 21 0 2249.1665 Q8NBT2 Q8NBT2 162 182 SPC24 Kinetochore protein Spc24 yes yes 3;4 5.7005E-23 111.65 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.84667 0.68699 11.185 5 Median 0.78736 0.74764 19.957 2 0 Median 0.88817 0.75101 NaN 1 0 Median 0.70707 0.67909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84667 0.68699 NaN 1 0 Median 65478000 37915000 27563000 51484000 29820000 21664000 5721600 3090600 2631000 7158200 4379300 2778900 0 0 0 0 0 0 1114000 625050 488980 11267 3411 11732 56997;56998;56999;57000;57001 57130;57131;57132;57133;57134 57131 5 GIHPTIISESFQK IAGSLLDSCTKLLQKGIHPTIISESFQKAL QKGIHPTIISESFQKALEKGIEILTDMSRP K G I Q K A 0 0 0 0 0 1 1 1 1 3 0 1 0 1 1 2 1 0 0 0 0 0 13 0 1455.7722 P50991 P50991 127 139 CCT4 T-complex protein 1 subunit delta yes yes 2;3 3.8547E-07 136.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 2 2 4 1.0981 0.9773 27.596 20 Median 1.0337 0.96062 16.018 6 0 Median 1.2517 1.0268 21.569 4 0 Linear 1.291 1.2444 1.974 2 0 Median 1.1012 0.94416 17.578 2 0 Median 1.4707 1.581 56.129 2 0 Median 1.1731 0.95019 26.685 4 0 Median 389680000 197050000 192640000 217920000 121260000 96662000 33159000 14716000 18443000 104860000 44714000 60146000 19145000 9462700 9682000 4366300 1585600 2780800 10230000 5308200 4922000 11268 2424 11733 57002;57003;57004;57005;57006;57007;57008;57009;57010;57011;57012;57013;57014;57015;57016;57017;57018;57019;57020;57021 57135;57136;57137;57138;57139;57140;57141;57142;57143;57144;57145;57146;57147;57148;57149;57150;57151;57152;57153 57138 19 GIHQSTIDLK PVYIPEVELNHKLIKGIHQSTIDLKNELKQ HKLIKGIHQSTIDLKNELKQCIGRLQEPTP K G I L K N 0 0 0 1 0 1 0 1 1 2 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1110.6033 Q14258;A0A3B3IUA7 Q14258 336 345 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.0090097 58.981 By MS/MS By matching By MS/MS 2 1 1 1.3166 1.2531 15.083 4 Median NaN NaN NaN 0 0 Median 1.5622 1.359 8.6604 2 2 Median 1.1482 1.2284 NaN 1 0 Median 1.169 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6000200 2434500 3565600 0 0 0 4129800 1555500 2574300 1144700 543590 601120 725670 335500 390170 0 0 0 0 0 0 11269 2870 11734 57022;57023;57024;57025 57154;57155;57156 57155 3 GIHQSTIDLKNELK PVYIPEVELNHKLIKGIHQSTIDLKNELKQ KGIHQSTIDLKNELKQCIGRLQEPTPSSGD K G I L K Q 0 0 1 1 0 1 1 1 1 2 2 2 0 0 0 1 1 0 0 0 0 0 14 1 1594.8679 Q14258;A0A3B3IUA7 Q14258 336 349 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 3 0.0012756 38.357 By MS/MS By matching 1 1 1.0961 1.1172 14.959 2 Median 1.1399 1.2419 NaN 1 0 Median 1.054 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18321000 8723800 9597400 11117000 5085500 6031600 7204100 3638300 3565700 0 0 0 0 0 0 0 0 0 0 0 0 11270 2870 11735 57026;57027 57157 57157 1 GIHSSSTVLASVEAAR SDHLAKHIKTHQNKKGIHSSSTVLASVEAA IHSSSTVLASVEAARDDTLITAGGTTLILA K G I A R D 3 1 0 0 0 0 1 1 1 1 1 0 0 0 0 4 1 0 0 2 0 0 16 0 1583.8267 H0Y6K5;A0A494C070;H0Y7L6;Q02447 H0Y6K5 640 655 SP3 Transcription factor Sp3 yes no 3 0.00011612 46.926 By matching By MS/MS 2 2 1.2351 1.1844 5.0059 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0862 1.1434 6.1397 2 0 Median 1.4188 1.2032 3.3843 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11432000 5324200 6107700 0 0 0 0 0 0 8893400 4437900 4455400 2538600 886240 1652300 0 0 0 0 0 0 11271 457 11736 57028;57029;57030;57031 57158 57158 1 GIHVEVPPAEAER CQETIRTALAMGADRGIHVEVPPAEAERLG DRGIHVEVPPAEAERLGPLQVARVLAKLAE R G I E R L 2 1 0 0 0 0 3 1 1 1 0 0 0 0 2 0 0 0 0 2 0 0 13 0 1402.7205 P38117 P38117 86 98 ETFB Electron transfer flavoprotein subunit beta yes yes 2;3 3.4597E-07 110.14 By MS/MS By MS/MS By MS/MS By MS/MS 3 6 2 1 0.93045 0.8213 23.131 11 Median 0.67072 0.63562 14.744 3 0 Median 1.0349 0.87557 14.021 5 2 Median 0.93645 0.89985 12.091 2 1 Median 0.77585 0.64422 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157070000 92936000 64134000 77414000 50324000 27090000 55761000 27936000 27825000 18320000 10679000 7641000 5576200 3997400 1578800 0 0 0 0 0 0 11272 2272 11737 57032;57033;57034;57035;57036;57037;57038;57039;57040;57041;57042;57043 57159;57160;57161;57162;57163;57164;57165;57166;57167;57168;57169;57170;57171;57172;57173;57174;57175 57159 15 GIIASSVGTILK KYILVTGGVISGIGKGIIASSVGTILKSCG IGKGIIASSVGTILKSCGLHVTSIKIDPYI K G I L K S 1 0 0 0 0 0 0 2 0 3 1 1 0 0 0 2 1 0 0 1 0 0 12 0 1157.702 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ITH9 P17812 17 28 CTPS1 CTP synthase 1 yes no 2 0.00059168 72.643 By MS/MS By matching By MS/MS By matching By matching By matching 3 3 1 1 1 2 1.2605 1.1036 21.286 11 Median 1.2537 1.1651 33.743 3 0 Median 1.2605 1.1036 18.198 3 0 Median 1.3612 1.4091 NaN 1 0 Median 1.1705 1.004 NaN 1 0 Median 1.3857 1.4225 NaN 1 0 Median 1.2377 1.0512 4.8163 2 0 Median 76091000 34026000 42064000 38478000 17502000 20976000 29118000 12979000 16139000 6897500 2924000 3973500 374450 156070 218380 826150 309580 516570 397210 155600 241610 11273 2046 11738 57044;57045;57046;57047;57048;57049;57050;57051;57052;57053;57054 57176;57177;57178;57179 57177 4 GIIDPTK GYDAMAGDFVNMVEKGIIDPTKVVRTALLD DFVNMVEKGIIDPTKVVRTALLDAAGVASL K G I T K V 0 0 0 1 0 0 0 1 0 2 0 1 0 0 1 0 1 0 0 0 0 0 7 0 742.4225 P10809 P10809 517 523 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 1 0.0060544 64.803 By matching By MS/MS 1 2 1.1554 0.98718 3.6778 3 Median 0.97802 0.93615 NaN 1 0 Median 1.1679 0.99588 1.2421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22218000 10030000 12188000 5029500 2423300 2606200 17188000 7606700 9581500 0 0 0 0 0 0 0 0 0 0 0 0 11274 1947 11739 57055;57056;57057 57180 57180 1 GIIDSTVSDQR VLARSSPTDKHTLVKGIIDSTVSDQRQVVA TLVKGIIDSTVSDQRQVVAVTGDGTNDGPA K G I Q R Q 0 1 0 2 0 1 0 1 0 2 0 0 0 0 0 2 1 0 0 1 0 0 11 0 1189.5939 P20020;E7ERY9 P20020 779 789 ATP2B1 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase yes no 2 0.00011287 135.71 By MS/MS By MS/MS 5 3 1.3427 1.2065 15.061 8 Median 1.0265 1.022 15.527 5 2 Median 1.5571 1.3089 3.8956 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53059000 22210000 30849000 29263000 13275000 15989000 23796000 8935200 14860000 0 0 0 0 0 0 0 0 0 0 0 0 11275 2071 11740 57058;57059;57060;57061;57062;57063;57064;57065 57181;57182;57183;57184;57185;57186;57187;57188;57189;57190 57187 9 GIILAGTEEQK SITVTLAAHQAIGLKGIILAGTEEQKAKYL IGLKGIILAGTEEQKAKYLPKLASGEHIAA K G I Q K A 1 0 0 0 0 1 2 2 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 0 1157.6292 Q9H845 Q9H845 152 162 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 2 0.0001236 120.12 By MS/MS By MS/MS By matching 1 1 1 1.2216 1.05 11.309 3 Median 1.0351 0.97038 NaN 1 0 Median 1.4507 1.2128 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2216 1.05 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30528000 12962000 17566000 13597000 6323800 7273500 16262000 6398200 9863700 0 0 0 668860 240190 428670 0 0 0 0 0 0 11276 3988 11741 57066;57067;57068 57191;57192;57193;57194 57192 4 GIIPQLFSR YLEHGLETTPTAPWRGIIPQLFSRLNHPEV PTAPWRGIIPQLFSRLNHPEVYVRQSICNL R G I S R L 0 1 0 0 0 1 0 1 0 2 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1029.5971 J3KRA9;Q96Q15 J3KRA9 1711 1719 SMG1 Serine/threonine-protein kinase SMG1 yes no 2 0.037899 34.253 By MS/MS By matching By matching 1 1 1 1.1596 1.0068 4.6059 3 Median 1.0247 1.0368 NaN 1 0 Median 1.1596 1.0068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2324 0.94728 NaN 1 0 Median 4103000 1946000 2157000 2996600 1457300 1539300 489490 195120 294370 0 0 0 0 0 0 0 0 0 616930 293640 323290 11277 1325 11742 57069;57070;57071 57195 57195 1 GIISAADR EVIGKRGSDIIIVGRGIISAADRLEAAEMY DIIIVGRGIISAADRLEAAEMYRKAAWEAY R G I D R L 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 8 0 801.43447 P11172 P11172 452 459 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 2 0.012861 54.157 By MS/MS By matching By matching 1 2 1 1.2517 1.1638 8.6896 4 Median NaN NaN NaN 0 0 Median 1.4292 1.2416 NaN 1 0 Median 1.0496 1.0858 10.147 2 0 Median 1.3217 1.161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5525300 2696100 2829300 0 0 0 1512100 581310 930770 3304300 1732500 1571800 708900 382200 326700 0 0 0 0 0 0 11278 1953 11743 57072;57073;57074;57075 57196 57196 1 GIISAADRLEAAEMYR EVIGKRGSDIIIVGRGIISAADRLEAAEMY IISAADRLEAAEMYRKAAWEAYLSRLGV__ R G I Y R K 4 2 0 1 0 0 2 1 0 2 1 0 1 0 0 1 0 0 1 0 0 0 16 1 1764.8829 P11172 P11172 452 467 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 3 4.3196E-05 56.147 By MS/MS By matching By matching 1 1 1 1.25 1.1273 34.27 3 Median 1.0267 1.0368 NaN 1 0 Median 1.25 1.1273 NaN 1 0 Median 1.7997 1.9486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10520000 5005600 5513900 7213900 3699300 3514600 1247700 561090 686640 2058000 745300 1312700 0 0 0 0 0 0 0 0 0 11279 1953 11744 57076;57077;57078 57197;57198 57198 2 GIITAVEPSTPTVLR ALQQRPSVLHNTGMKGIITAVEPSTPTVLR GIITAVEPSTPTVLRSTSTSSPVRPAATFP K G I L R S 1 1 0 0 0 0 1 1 0 2 1 0 0 0 2 1 3 0 0 2 0 0 15 0 1552.8825 C9J7T7;A0A384DVL6;C9JE98;C9J0Q5;Q9Y618;H7C0P3 C9J7T7 1430 1444 NCOR2 Nuclear receptor corepressor 2 yes no 2 2.2048E-10 109.42 By MS/MS By matching 2 1 0.63249 0.67989 11.154 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59812 0.65373 5.5477 2 0 Median 0.90266 0.78334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6512000 3921900 2590200 0 0 0 0 0 0 6407700 3874000 2533700 104330 47887 56446 0 0 0 0 0 0 11280 409 11745 57079;57080;57081 57199;57200 57200 2 GIKEEVQLTSK QIIELELKEEIKKKKGIKEEVQLTSKQKEM KKKKGIKEEVQLTSKQKEMLQAQLDREAQV K G I S K Q 0 0 0 0 0 1 2 1 0 1 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1230.682 Q92616 Q92616 819 829 GCN1L1 Translational activator GCN1 yes yes 2;3 0.00022567 110.14 By MS/MS By MS/MS By matching By matching By MS/MS 2 3 1 1 1 1.1379 1.0955 17.254 8 Median 1.0633 1.062 2.6178 2 0 Median 1.2544 1.2102 18.417 3 0 Median 1.2937 1.483 NaN 1 0 Median 1.1914 1.1093 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99052 0.88391 NaN 1 0 Median 29750000 13033000 16717000 6753800 3610800 3143000 19722000 7989000 11733000 1401700 634840 766830 503470 175470 328000 0 0 0 1368800 623130 745660 11281 3544 11746 57082;57083;57084;57085;57086;57087;57088;57089 57201;57202;57203;57204;57205;57206;57207;57208;57209 57207 9 GIKGEEIVQQLIENSTTFR SQKLTQDDIKALKDKGIKGEEIVQQLIENS EEIVQQLIENSTTFRDKTEFAQDKYIKKKK K G I F R D 0 1 1 0 0 2 3 2 0 3 1 1 0 1 0 1 2 0 0 1 0 0 19 1 2161.1379 Q9UJA5 Q9UJA5 118 136 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 3 0.025594 15.09 By MS/MS By matching By matching 1 1 1 1.233 1.2511 15.292 3 Median 1.233 1.2511 NaN 1 0 Median 1.1468 1.0467 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5122 1.419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2621000 1120300 1500700 1750300 757920 992360 804210 333880 470330 0 0 0 66523 28502 38020 0 0 0 0 0 0 11282 4294 11747 57090;57091;57092 57210;57211 57210 2 GIKPVTLELGGK GSVPTGMKIMEMSAKGIKPVTLELGGKSPL SAKGIKPVTLELGGKSPLIIFSDCDMNNAV K G I G K S 0 0 0 0 0 0 1 3 0 1 2 2 0 0 1 0 1 0 0 1 0 0 12 1 1210.7285 P49189 P49189 247 258 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2;3 0.00020459 67.334 By MS/MS By MS/MS 2 3 1.1174 1.0451 18.797 5 Median 0.92269 0.87913 1.9821 2 0 Median 1.2119 1.0916 15.159 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63952000 29503000 34449000 36018000 17818000 18200000 27934000 11685000 16248000 0 0 0 0 0 0 0 0 0 0 0 0 11283 2372 11748 57093;57094;57095;57096;57097 57212;57213;57214;57215;57216;57217 57215 6 GIKQDLIHR AELKQECLARGLETKGIKQDLIHRLQAYLE RGLETKGIKQDLIHRLQAYLEEHAEEEANE K G I H R L 0 1 0 1 0 1 0 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1078.6247 P82979;H0YHG0;F8VZQ9;F8VS12 P82979 29 37 SARNP SAP domain-containing ribonucleoprotein yes no 2 0.0026365 114.6 By MS/MS By MS/MS 1 2 1.1908 1.1238 19.436 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1908 1.1238 NaN 1 0 Median 0.75633 0.80604 4.3984 2 0 Median NaN NaN NaN 0 0 Median 14851000 7038800 7812000 0 0 0 0 0 0 0 0 0 11612000 5315700 6296100 3239000 1723100 1515900 0 0 0 11284 2661 11749 57098;57099;57100 57218;57219;57220;57221 57219 4 GILAADESTGSIAK KELSDIAHRIVAPGKGILAADESTGSIAKR KGILAADESTGSIAKRLQSIGTENTEENRR K G I A K R 3 0 0 1 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 0 0 0 14 0 1331.6933 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8 J3KPS3 29 42 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 1.213E-08 149.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 2 2 1 1.2245 1.121 19.142 15 Median 1.2402 1.1572 3.5978 5 1 Median 1.1436 0.95594 15.242 5 0 Median 1.2652 1.2586 5.035 2 0 Median 0.96506 0.81579 24.246 2 0 Median 1.4236 1.4253 NaN 1 0 Median NaN NaN NaN 0 0 Median 1906200000 838650000 1067500000 1002400000 428650000 573730000 538810000 246910000 291910000 319880000 142350000 177530000 32177000 15150000 17028000 12941000 5592400 7348900 0 0 0 11285 1310 11750 57101;57102;57103;57104;57105;57106;57107;57108;57109;57110;57111;57112;57113;57114;57115;57116;57117 57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253 57236 31 GILAADESTGSIAKR KELSDIAHRIVAPGKGILAADESTGSIAKR GILAADESTGSIAKRLQSIGTENTEENRRF K G I K R L 3 1 0 1 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 0 0 0 15 1 1487.7944 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8 J3KPS3 29 43 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 1.8909E-26 199.09 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.256 1.1435 33.338 7 Median 1.2573 1.3479 0.1539 2 0 Median 0.87538 0.7944 51.518 2 1 Median 1.3382 1.5188 NaN 1 0 Median 1.232 1.075 4.4444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 240390000 103670000 136710000 227700000 97054000 130640000 4263700 2763500 1500300 1792600 991200 801420 6634300 2864000 3770300 0 0 0 0 0 0 11286 1310 11751 57118;57119;57120;57121;57122;57123;57124 57254;57255;57256;57257;57258;57259;57260;57261;57262 57256 8 GILAADESVGSMAK KELSDIALRIVAPGKGILAADESVGSMAKR KGILAADESVGSMAKRLSQIGVENTEENRR K G I A K R 3 0 0 1 0 0 1 2 0 1 1 1 1 0 0 2 0 0 0 1 0 0 14 0 1347.6704 J3KSV6;J3QKP5;A8MVZ9;P09972;C9J8F3;J3QKK1 J3KSV6 29 42 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 2 4.7499E-05 93.258 By MS/MS 2 1.2283 1.1354 2.7779 2 Median 1.2283 1.1354 2.7779 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31366000 13308000 18058000 31366000 13308000 18058000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11287 546 11752 57125;57126 57263;57264 57264 2 GILADEDSSRPVWLK LPVDDTSFRWVESLKGILADEDSSRPVWLK GILADEDSSRPVWLKAINCATSGVVGLVNC K G I L K A 1 1 0 2 0 0 1 1 0 1 2 1 0 0 1 2 0 1 0 1 0 0 15 1 1684.8784 P49327;A0A0U1RQF0 P49327 1430 1444 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 2.5001E-08 122.51 By MS/MS By MS/MS 4 5 0.93347 0.90207 71 9 Median 0.80947 0.82254 94.517 4 0 Median 1.238 1.1661 12.487 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 227330000 119820000 107500000 177100000 98474000 78626000 50227000 21348000 28879000 0 0 0 0 0 0 0 0 0 0 0 0 11288 2377 11753 57127;57128;57129;57130;57131;57132;57133;57134;57135 57265;57266;57267;57268;57269;57270 57268 6 GILDVQSVQEK LAEAAERRQKEAASRGILDVQSVQEKRKKK AASRGILDVQSVQEKRKKKEKIEKQIATSG R G I E K R 0 0 0 1 0 2 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1214.6507 Q8NHG7 Q8NHG7 40 50 SVIP Small VCP/p97-interacting protein yes yes 2 3.79E-05 116.3 By MS/MS By MS/MS 1 2 1.0171 0.88424 14.89 2 Median 0.87235 0.79587 NaN 1 0 Median 1.1859 0.98241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8960300 4378900 4581400 7479400 3703200 3776200 1480900 675710 805190 0 0 0 0 0 0 0 0 0 0 0 0 11289 3442 11754 57136;57137;57138 57271;57272;57273 57273 3 GILDVQSVQEKR LAEAAERRQKEAASRGILDVQSVQEKRKKK ASRGILDVQSVQEKRKKKEKIEKQIATSGP R G I K R K 0 1 0 1 0 2 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 1 1370.7518 Q8NHG7 Q8NHG7 40 51 SVIP Small VCP/p97-interacting protein yes yes 3 0.0003814 51.013 By MS/MS 1 1.1615 1.1389 NaN 1 Median 1.1615 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2972800 1353800 1618900 2972800 1353800 1618900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11290 3442 11755 57139 57274;57275 57274 2 GILEQGWQADSTTR DFAAFVGLPVEEAVKGILEQGWQADSTTRM KGILEQGWQADSTTRMVLPRKPVAGALDVS K G I T R M 1 1 0 1 0 2 1 2 0 1 1 0 0 0 0 1 2 1 0 0 0 0 14 0 1560.7532 Q99627;E9PGT6;H7C3S9 Q99627 147 160 COPS8 COP9 signalosome complex subunit 8 yes no 2 5.4999E-11 172.8 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 1.0692 0.97509 37.123 7 Median 1.0249 0.97509 11.392 3 0 Median 1.1747 0.98461 11.705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6674 1.7643 NaN 1 0 Median 0.61888 0.50386 NaN 1 0 Median 101810000 47988000 53822000 80290000 38689000 41600000 16767000 7536600 9230700 0 0 0 0 0 0 3988400 1359300 2629100 764640 402370 362270 11291 927 11756 57140;57141;57142;57143;57144;57145;57146;57147 57276;57277;57278;57279;57280;57281;57282;57283;57284;57285 57278 10 GILEVWSTQQGPR PSRVAQFLVIYAPRRGILEVWSTQQGPRVG RRGILEVWSTQQGPRVGAFNVGKHCRLLYP R G I P R V 0 1 0 0 0 2 1 2 0 1 1 0 0 0 1 1 1 1 0 1 0 0 13 0 1469.7627 Q9H2M9 Q9H2M9 473 485 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.0017613 50.292 By MS/MS 1 0.96386 0.96031 NaN 1 Median 0.96386 0.96031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2333600 1082300 1251300 2333600 1082300 1251300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11292 3945 11757 57148 57286 57286 1 GILFVGSGVSGGEEGAR EYRDTTRRCRDLKAKGILFVGSGVSGGEEG LFVGSGVSGGEEGARYGPSLMPGGNKEAWP K G I A R Y 1 1 0 0 0 0 2 6 0 1 1 0 0 1 0 2 0 0 0 2 0 0 17 0 1590.8002 P52209;K7EMN2;K7EM49;K7EPF6 P52209 120 136 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 2.9671E-13 138.94 By MS/MS By matching By MS/MS By MS/MS 3 1 1 2 1.1255 1.0886 44.011 7 Median 0.95319 0.94581 55.789 3 0 Median 1.2932 1.0886 NaN 1 0 Median 1.1255 1.1002 NaN 1 0 Median 1.5117 1.3247 11.671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150750000 72693000 78056000 112910000 54980000 57927000 9474400 4153800 5320600 25389000 12309000 13080000 2979000 1250400 1728600 0 0 0 0 0 0 11293 2447 11758 57149;57150;57151;57152;57153;57154;57155 57287;57288;57289;57290;57291;57292;57293;57294 57293 8 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK DIKKVVKQASEGPLKGILGYTEHQVVSSDF FDAGAGIALNDHFVKLISWYDNEFGYSNRV K G I V K L 3 0 2 4 0 1 1 4 3 2 2 1 0 3 0 5 3 0 1 3 0 0 38 0 4035.8875 P04406;E7EUT5 P04406 272 309 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 4;5 1.0119E-05 30.047 By MS/MS 4 1.0772 0.90912 6.1368 4 Median NaN NaN NaN 0 0 Median 1.0772 0.90912 6.1368 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24655000 10620000 14035000 0 0 0 24655000 10620000 14035000 0 0 0 0 0 0 0 0 0 0 0 0 11294 1850 11759 57156;57157;57158;57159 57295;57296;57297;57298 57298 4 GILIPLCESGTCTLR MALKKALFKPGAWFKGILIPLCESGTCTLR GILIPLCESGTCTLREAIIVGSIITKCSIP K G I L R E 0 1 0 0 2 0 1 2 0 2 3 0 0 0 1 1 2 0 0 0 0 0 15 0 1688.859 Q13895 Q13895 289 303 BYSL Bystin yes yes 2 0.0056256 34.887 By MS/MS 1 0.83472 0.84203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83472 0.84203 NaN 1 0 Median NaN NaN NaN 0 0 Median 1446400 769110 677340 0 0 0 0 0 0 0 0 0 0 0 0 1446400 769110 677340 0 0 0 11295 2845 11760 57160 57299;57300 57299 2 GILLFGPPGTGK IKFPHLFTGKRTPWRGILLFGPPGTGKSYL PWRGILLFGPPGTGKSYLAKAVATEANNST R G I G K S 0 0 0 0 0 0 0 4 0 1 2 1 0 1 2 0 1 0 0 0 0 0 12 0 1155.6652 Q9UN37;I3L4J1;Q6PIW4;O75351 O75351 169 180 VPS4A;FIGNL1;VPS4B Vacuolar protein sorting-associated protein 4A;Fidgetin-like protein 1;Vacuolar protein sorting-associated protein 4B no no 2 0.00061418 67.993 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 2 1 0.88838 0.80494 18.023 8 Median 0.85903 0.80765 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71939 0.71853 10.999 2 0 Median 0.92095 0.8129 1.8675 2 0 Median 1.0878 1.0544 6.0469 2 0 Median 0.77481 0.65629 NaN 1 0 Median 22941000 12715000 10226000 6096100 3171200 2924900 0 0 0 9732900 5734900 3998000 971910 524710 447200 5105500 2688000 2417500 1035100 596190 438890 11296 1661;4339 11761 57161;57162;57163;57164;57165;57166;57167;57168 57301;57302;57303;57304;57305;57306;57307;57308 57308 8 GILLFGTK GVGITLGAHQSIGFKGILLFGTKAQKEKYL HQSIGFKGILLFGTKAQKEKYLPKLASGET K G I T K A 0 0 0 0 0 0 0 2 0 1 2 1 0 1 0 0 1 0 0 0 0 0 8 0 847.51674 P49748;K7EQP4;J3QKU9 P49748 188 195 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.011256 57.281 By MS/MS By matching 1 1 1.1626 1.063 12.483 2 Median 1.0119 0.97324 NaN 1 0 Median 1.3357 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4300100 1819700 2480400 3234500 1400400 1834000 1065700 419320 646370 0 0 0 0 0 0 0 0 0 0 0 0 11297 2394 11762 57169;57170 57309;57310 57310 2 GILLITGR GIFRCWGRDTFIALRGILLITGRYVEARNI DTFIALRGILLITGRYVEARNIILAFAGTL R G I G R Y 0 1 0 0 0 0 0 2 0 2 2 0 0 0 0 0 1 0 0 0 0 0 8 0 841.53854 P35573 P35573 1109 1116 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.011256 57.281 By MS/MS By matching 1 1 1.7697 1.6356 2.4895 2 Median 1.6008 1.6071 NaN 1 0 Median 1.9564 1.6647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080000 703450 1376600 1211200 459680 751480 868860 243770 625090 0 0 0 0 0 0 0 0 0 0 0 0 11298 2243 11763 57171;57172 57311;57312 57312 2 GILLQLFGGTR SALAPSIYEHEDIKKGILLQLFGGTRKDFS DIKKGILLQLFGGTRKDFSHTGRGKFRAEI K G I T R K 0 1 0 0 0 1 0 3 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1173.687 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 429 439 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00052123 67.993 By MS/MS By matching By MS/MS By matching 2 3 3 1 1.0618 1.0238 16.484 9 Median 1.0094 0.98437 5.5587 2 0 Median 1.4091 1.2298 18.294 3 0 Median 0.92057 0.98172 8.8485 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1374 0.88605 NaN 1 0 Median 21820000 10656000 11164000 11082000 5416100 5665900 3524200 1568500 1955700 6937700 3557800 3379900 0 0 0 0 0 0 276560 113980 162580 11299 441 11764 57173;57174;57175;57176;57177;57178;57179;57180;57181 57313;57314;57315 57313 3 GILLQLFGGTRK SALAPSIYEHEDIKKGILLQLFGGTRKDFS IKKGILLQLFGGTRKDFSHTGRGKFRAEIN K G I R K D 0 1 0 0 0 1 0 3 0 1 3 1 0 1 0 0 1 0 0 0 0 0 12 1 1301.782 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 429 440 MCM4 DNA replication licensing factor MCM4 yes no 2;3 0.011559 38.086 By MS/MS By MS/MS 3 2 1.073 1.1153 19.695 5 Median 1.073 1.1153 8.5351 3 0 Median NaN NaN NaN 0 0 Median 1.1418 1.3016 30.55 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7246000 3182900 4063000 4727800 2074100 2653700 0 0 0 2518200 1108800 1409400 0 0 0 0 0 0 0 0 0 11300 441 11765 57182;57183;57184;57185;57186 57316;57317;57318;57319 57316 4 GILLTDGSEK MSALQKILYRHMQAKGILLTDGSEKDKKGK HMQAKGILLTDGSEKDKKGKGGAKTLMNTI K G I E K D 0 0 0 1 0 0 1 2 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1031.5499 P51531;F6VDE0;A0A0U1RQZ9 P51531 985 994 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00045749 109.11 By MS/MS By MS/MS 1 1 0.77177 0.6995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77177 0.6995 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1803800 902090 901760 0 0 0 0 0 0 0 0 0 1803800 902090 901760 0 0 0 0 0 0 11301 2433 11766 57187;57188 57320;57321 57320 2 GILLTDGSEKDKK MSALQKILYRHMQAKGILLTDGSEKDKKGK AKGILLTDGSEKDKKGKGGAKTLMNTIMQL K G I K K G 0 0 0 2 0 0 1 2 0 1 2 3 0 0 0 1 1 0 0 0 0 0 13 2 1402.7668 P51531;F6VDE0;A0A0U1RQZ9 P51531 985 997 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 0.0045435 34.179 By matching By MS/MS By matching 1 1 1 0.70595 0.8179 19.645 3 Median NaN NaN NaN 0 0 Median 0.5943 0.59714 NaN 1 0 Median 0.70595 0.8179 NaN 1 0 Median 0.84545 0.85688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5243800 3557500 1686400 0 0 0 526800 326320 200480 4466500 3107300 1359100 250580 123840 126740 0 0 0 0 0 0 11302 2433 11767 57189;57190;57191 57322 57322 1 GILLVGPPGTGK KNPQKFTILGGKLPKGILLVGPPGTGKTLL LPKGILLVGPPGTGKTLLARAVAGEADVPF K G I G K T 0 0 0 0 0 0 0 4 0 1 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1107.6652 Q96I63;Q96TA2;R4GNA5 Q96I63 374 385 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 0.00063439 63.816 By MS/MS 1 0.69263 0.66399 NaN 1 Median 0.69263 0.66399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4623500 2755300 1868200 4623500 2755300 1868200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11303 3677 11768 57192 57323 57323 1 GILRPLSTR LNSSEEDDTEGFSERGILRPLSTRHGVEDD EGFSERGILRPLSTRHGVEDDEEDEEEGEE R G I T R H 0 2 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 9 1 1011.6189 Q9Y3T9 Q9Y3T9 685 693 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.0087128 77.058 By MS/MS By MS/MS By matching 2 1 1 1.1066 1.0253 16.118 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.042 1.1673 21.192 2 0 Median 1.058 0.93751 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1574 1.0463 NaN 1 0 Median 46729000 21361000 25369000 0 0 0 0 0 0 37741000 17260000 20481000 5788200 2742600 3045600 0 0 0 3200500 1358100 1842400 11304 4433 11769 57193;57194;57195;57196 57324;57325;57326 57324 3 GILSGTSDLLLTFDEAEVRK PYSVPARDYLIDGSRGILSGTSDLLLTFDE TSDLLLTFDEAEVRKIIRVCKGILEYLTVA R G I R K I 1 1 0 2 0 0 2 2 0 1 4 1 0 1 0 2 2 0 0 1 0 0 20 1 2163.1423 P18206 P18206 114 133 VCL Vinculin yes yes 3 2.2968E-06 48.848 By MS/MS By MS/MS 1 1 1.0564 1.0514 6.251 2 Median 1.0586 1.0989 NaN 1 0 Median 1.0543 1.0059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3677500 1713900 1963500 2509600 1197800 1311800 1167900 516160 651700 0 0 0 0 0 0 0 0 0 0 0 0 11305 2057 11770 57197;57198 57327;57328;57329 57327 3 GILSLIQSSTR PHMLPEDGANLSSARGILSLIQSSTRRAYQ SSARGILSLIQSSTRRAYQQILDVLDENRR R G I T R R 0 1 0 0 0 1 0 1 0 2 2 0 0 0 0 3 1 0 0 0 0 0 11 0 1173.6717 H7C433;A0A0A0MS29;Q9GZY8;E9PQX8 H7C433 58 68 MFF Mitochondrial fission factor yes no 2 0.0052448 46.462 By MS/MS By matching 1 1 1.5019 1.3485 47.107 2 Median 1.0109 0.9665 NaN 1 0 Median 2.2312 1.8816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3691100 1650200 2041000 3561500 1614000 1947600 129620 36207 93410 0 0 0 0 0 0 0 0 0 0 0 0 11306 173 11771 57199;57200 57330;57331 57330 2 GILSSHPK ______________________________ TQGLISKGILSSHPKYGSIPKLILACIMGY K G I P K Y 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 2 0 0 0 0 0 0 8 0 837.47085 D6RDK6;D6RBN5;Q9NX40;D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6R918;D6RBC5;D6RDI5;D6RA54;D6RC55 D6RDK6 11 18 OCIAD1 OCIA domain-containing protein 1 yes no 2 0.066188 31.289 By matching By MS/MS By matching 1 1 1 1.0794 0.921 9.9714 3 Median 0.86934 0.85966 NaN 1 0 Median 1.0857 0.921 NaN 1 0 Median 1.0794 1.0464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1868800 927200 941590 1024600 546300 478300 689180 307990 381190 155010 72906 82105 0 0 0 0 0 0 0 0 0 11307 815 11772 57201;57202;57203 57332;57333 57332 2 GILTVDELLAIR YNTGDNTTFPDAEDKGILTVDELLAIRIPL EDKGILTVDELLAIRIPLNDLFRCNSLSTL K G I I R I 1 1 0 1 0 0 1 1 0 2 3 0 0 0 0 0 1 0 0 1 0 0 12 0 1311.7762 P13473 P13473 133 144 LAMP2 Lysosome-associated membrane glycoprotein 2 yes yes 2 0.00043077 78.934 By MS/MS By MS/MS 1 5 1.2607 1.0842 15.773 6 Median 1.0696 1.0802 NaN 1 0 Median 1.2857 1.0883 17.446 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27896000 11750000 16146000 487960 241420 246540 27408000 11508000 15900000 0 0 0 0 0 0 0 0 0 0 0 0 11308 1990 11773 57204;57205;57206;57207;57208;57209 57334;57335;57336;57337 57335 4 GIMGEDTYPYQGK GGLPSQAFEYILYNKGIMGEDTYPYQGKDG NKGIMGEDTYPYQGKDGYCKFQPGKAIGFV K G I G K D 0 0 0 1 0 1 1 3 0 1 0 1 1 0 1 0 1 0 2 0 0 0 13 0 1457.6497 P09668;A0A087X0D5;E9PKT6 P09668 198 210 CTSH Pro-cathepsin H;Cathepsin H mini chain;Cathepsin H;Cathepsin H heavy chain;Cathepsin H light chain yes no 2 0.0031413 61.56 By MS/MS 1 0.65862 0.61238 NaN 1 Median 0.65862 0.61238 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363500 4119800 2243700 6363500 4119800 2243700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11309 103 11774 57210 57338 57338 1 GINAIFER FLKECGLKLTQVSPRGINAIFERLRNILHE LTQVSPRGINAIFERLRNILHESEIDKRVQ R G I E R L 1 1 1 0 0 0 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 918.49232 B7WP74;Q9HCG8 B7WP74 311 318 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes no 2 0.0059586 73.26 By matching By matching By MS/MS By matching 1 1 2 2 1.4523 1.3075 18.766 6 Median 0.95818 0.93458 NaN 1 0 Median 1.7045 1.4366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3185 1.3855 18.15 2 0 Median 1.556 1.2735 13.684 2 0 Median 12534000 5191800 7342200 4603100 2090000 2513100 2035300 911950 1123400 0 0 0 0 0 0 4890600 1836000 3054600 1005000 353870 651150 11310 627 11775 57211;57212;57213;57214;57215;57216 57339 57339 1 GINSSNVENQLQATQAAR NNQGTVNWSVDDIVKGINSSNVENQLQATQ SSNVENQLQATQAARKLLSREKQPPIDNII K G I A R K 3 1 3 0 0 3 1 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 18 0 1899.9399 P52292;J3QLL0;J3KS65 P52292 84 101 KPNA2 Importin subunit alpha-1 yes no 2;3 2.7598E-66 240.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 6 8 5 1.2743 1.2207 26.59 28 Median 1.3379 1.2619 15.914 4 2 Median 1.0474 0.89371 3.2485 2 0 Median 1.4168 1.4038 8.9833 4 1 Median 1.1742 0.9947 8.1202 6 2 Median 1.6455 1.6428 13.478 7 0 Median 1.07 0.91144 8.0626 5 0 Median 379240000 153170000 226070000 90323000 36288000 54035000 10922000 5487700 5434300 149860000 58578000 91282000 53325000 23951000 29374000 66327000 24550000 41776000 8483200 4319000 4164200 11311 2448 11776 57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241;57242;57243;57244;57245 57340;57341;57342;57343;57344;57345;57346;57347;57348;57349;57350;57351;57352;57353;57354;57355;57356;57357;57358;57359;57360;57361;57362;57363;57364;57365;57366;57367;57368;57369;57370;57371;57372;57373 57344 33 GINTLVTYDMVPEPK TYFNKPDIDAWELRKGINTLVTYDMVPEPK GINTLVTYDMVPEPKIIDAALRACRRLNDF K G I P K I 0 0 1 1 0 0 1 1 0 1 1 1 1 0 2 0 2 0 1 2 0 0 15 0 1675.8491 P20674;H3BNX8 P20674 73 87 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 1.4237E-09 121.08 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 0.72011 0.66199 23.243 8 Median 0.73362 0.66199 0.29176 2 0 Median 1.0618 0.87436 0.28123 2 0 Median 0.67141 0.64592 7.7411 2 0 Median 0.58797 0.49409 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55954 0.45945 NaN 1 0 Median 126980000 69621000 57357000 89390000 49929000 39461000 22142000 10601000 11540000 12559000 7292200 5266500 140890 80559 60334 0 0 0 2746500 1717400 1029100 11312 2083 11777;11778 57246;57247;57248;57249;57250;57251;57252;57253 57374;57375;57376;57377;57378;57379;57380;57381;57382;57383;57384;57385;57386;57387;57388;57389;57390;57391 57376 840 18 GIPALIENDHHMNSIR WRFSCDVAEGKYKEKGIPALIENDHHMNSI IPALIENDHHMNSIRKIIWEDIFPKLKLWE K G I I R K 1 1 2 1 0 0 1 1 2 3 1 0 1 0 1 1 0 0 0 0 0 0 16 0 1815.905 P35573 P35573 270 285 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 0.00019738 43.024 By MS/MS By matching 1 1 0.77837 0.68973 14.982 2 Median 0.65908 0.6204 NaN 1 0 Median 0.91926 0.76681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9958800 4871700 5087000 8411900 4114000 4297900 1546900 757720 789160 0 0 0 0 0 0 0 0 0 0 0 0 11313 2243 11779 57254;57255 57392 57392 1 GIPAPEEER FIDKNGETELCMEGRGIPAPEEERTRQGWQ LCMEGRGIPAPEEERTRQGWQRYYFEGIKQ R G I E R T 1 1 0 0 0 0 3 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 9 0 996.48762 O95433;G3V438;H0YJU2 O95433 306 314 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.068322 41.448 By MS/MS 1 0.72807 0.63025 NaN 1 Median NaN NaN NaN 0 0 Median 0.72807 0.63025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3636700 2055100 1581600 0 0 0 3636700 2055100 1581600 0 0 0 0 0 0 0 0 0 0 0 0 11314 1773 11780 57256 57393 57393 1 GIPDDRDGLFDTIQR IEDSWQTHRIHNALKGIPDDRDGLFDTIQR GIPDDRDGLFDTIQRSKNHYQKRAYQCIKC K G I Q R S 0 2 0 4 0 1 0 2 0 2 1 0 0 1 1 0 1 0 0 0 0 0 15 1 1716.8431 Q93008;O00507;H7C2M9 Q93008 2361 2375 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3 5.7665E-05 75.669 By MS/MS By MS/MS 1 1 2.1388 2.1413 59.716 2 Median 1.3126 1.4037 NaN 1 0 Median 3.485 3.2663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12113000 5565400 6547300 7029200 3821100 3208100 5083500 1744300 3339200 0 0 0 0 0 0 0 0 0 0 0 0 11315 3573 11781 57257;57258 57394;57395;57396 57394 3 GIPEFWLTVFK KIEDEKKDEEKEDPKGIPEFWLTVFKNVDL EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP K G I F K N 0 0 0 0 0 0 1 1 0 1 1 1 0 2 1 0 1 1 0 1 0 0 11 0 1335.7227 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543 F8W020 173 183 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 0.0054939 45.997 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 3 2 1 1.0061 0.90023 8.5275 11 Median 0.90997 0.86805 11.552 4 0 Median 1.0188 0.86017 NaN 1 0 Median 0.97954 0.96767 9.1056 3 0 Plateau 1.0719 0.94374 6.1316 2 0 Median NaN NaN NaN 0 0 Median 1.095 0.90023 NaN 1 0 Median 25441000 12882000 12559000 12263000 6228800 6034700 186280 102840 83444 11640000 5882900 5756900 1289600 638020 651630 0 0 0 61460 29573 31887 11316 1033 11782 57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269 57397;57398;57399;57400;57401 57398 5 GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSR QGHNSPDSPVTSAAKGIPGFGNTGNISGAP GAQGVNNTASGNNSREGTGGSNGKRERYTE K G I S R E 4 1 6 0 0 1 0 8 0 2 0 0 0 1 3 4 3 0 1 2 0 0 36 0 3403.6141 Q86XP3;A0A0A0MSJ0 Q86XP3 762 797 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 1.5071E-28 89.694 By MS/MS By matching 2 1 0.47351 0.50311 7.1731 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46473 0.50236 0.20985 2 1 Median NaN NaN NaN 0 0 Median 0.53761 0.5688 NaN 1 0 Median NaN NaN NaN 0 0 Median 19724000 13901000 5823200 0 0 0 0 0 0 16700000 12210000 4490200 0 0 0 3023500 1690500 1333000 0 0 0 11317 3302 11783 57270;57271;57272 57402;57403 57402 2 GIPHLVTHDAR KYKLCKVRKIFVGTKGIPHLVTHDARTIRY VGTKGIPHLVTHDARTIRYPDPLIKVNDTI K G I A R T 1 1 0 1 0 0 0 1 2 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1214.652 P62701;Q8TD47 P62701 135 145 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2;3 4.9332E-05 94.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 3 4 6 8 1.1078 0.99291 21.222 33 Median 0.94071 0.8929 14.935 5 0 Median 1.0473 0.8864 26.342 7 1 Median 1.0319 0.99087 15.834 3 0 Median 1.4365 1.1963 18.607 4 1 Median 1.0323 1.0524 10.197 6 3 Median 1.2804 1.0283 14.67 8 0 Median 469650000 223070000 246580000 119150000 59178000 59974000 122450000 56056000 66392000 54450000 26676000 27774000 15580000 6685100 8895200 127580000 61379000 66205000 30433000 13094000 17339000 11318 2593 11784 57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288;57289;57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301;57302;57303;57304;57305 57404;57405;57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419;57420;57421;57422;57423;57424;57425;57426;57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437;57438;57439;57440;57441;57442;57443;57444;57445;57446;57447;57448;57449;57450;57451;57452;57453;57454;57455;57456;57457;57458 57407 55 GIPIEVIPMAYVPVSR DFRKDSKNLGDQWHKGIPIEVIPMAYVPVS IPIEVIPMAYVPVSRAVSQKFGGVVELRMA K G I S R A 1 1 0 0 0 0 1 1 0 3 0 0 1 0 3 1 0 0 1 3 0 0 16 0 1739.9644 P49247 P49247 212 227 RPIA Ribose-5-phosphate isomerase yes yes 2 0.0029561 36.303 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.81042 0.72765 24.296 4 Median 0.89742 0.847 NaN 1 0 Median 0.74675 0.6451 NaN 1 0 Median 0.87952 0.82077 NaN 1 0 Median 0.59889 0.5026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6098600 3462300 2636300 5010800 2836600 2174200 280200 148730 131470 202960 117100 85863 604690 359920 244760 0 0 0 0 0 0 11319 2374 11785 57306;57307;57308;57309 57459;57460 57459 2 GIPILSLDWLHQSR DRIRRTVKFLCALGRGIPILSLDWLHQSRK RGIPILSLDWLHQSRKAGFFLPPDEYVVTD R G I S R K 0 1 0 1 0 1 0 1 1 2 3 0 0 0 1 2 0 1 0 0 0 0 14 0 1633.894 Q14676 Q14676 1944 1957 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.057 11.915 By MS/MS By matching By matching 4 2 1 0.97552 1.0841 32.009 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95823 1.0022 19.557 4 0 Median 1.3393 1.1712 3.3717 2 0 Median NaN NaN NaN 0 0 Median 0.60825 0.50349 NaN 1 0 Median 3707500 1777000 1930500 0 0 0 0 0 0 3400200 1666100 1734200 143460 61247 82217 0 0 0 163770 49626 114150 11320 2887 11786 57310;57311;57312;57313;57314;57315;57316 57461;57462 57461 2 GIPLESTDGER DKVWRLDLVMVILFKGIPLESTDGERLVKA ILFKGIPLESTDGERLVKAAQCGHPVLCVQ K G I E R L 0 1 0 1 0 0 2 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1172.5673 A0A286YEX4;P08651;S4R308;K7ESG9;K7EKH0;K7EJB0;C9JWJ8;K7EN08;Q14938;A0A590UJ82;A0A590UK73;B1AKN6;B1AKN7;B1AKN5;A0A590UK09;B1AKN8;Q12857;S4R3K4;U3KPY9;A0A087WXP2;Q5W0Y9 A0A286YEX4 162 172 NFIC;NFIA;NFIX;NFIB Nuclear factor 1 C-type;Nuclear factor 1;Nuclear factor 1 X-type;Nuclear factor 1 A-type no no 2 0.0024672 56.916 By MS/MS By MS/MS 4 2 0.97517 0.83628 34.237 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73858 0.7358 34.433 3 1 Median 1.2385 1.0475 31.849 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19020000 8960700 10059000 0 0 0 0 0 0 10619000 5477500 5141700 8400800 3483300 4917500 0 0 0 0 0 0 11321 350;483 11787 57317;57318;57319;57320;57321;57322 57463;57464;57465;57466;57467 57467 5 GIPNVLRR LSPFEQRAYPHVFTKGIPNVLRRIRESFFR YPHVFTKGIPNVLRRIRESFFRVVPQFVVF K G I R R I 0 2 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 8 1 923.56648 O14949 O14949 34 41 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 0.026521 47.743 By matching By MS/MS 1 1 1.2899 1.1897 9.4111 2 Median 1.1157 1.1131 NaN 1 0 Median 1.4914 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55671000 23595000 32076000 20690000 9729000 10961000 34982000 13866000 21116000 0 0 0 0 0 0 0 0 0 0 0 0 11322 1505 11788 57323;57324 57468 57468 1 GIPTYIYYFPR WYGTERLIRKHLAARGIPTYIYYFPRSKSA LAARGIPTYIYYFPRSKSAVLHSQSSSSSS R G I P R S 0 1 0 0 0 0 0 1 0 2 0 0 0 1 2 0 1 0 3 0 0 0 11 0 1388.7129 Q86WJ1;A0A0A0MRH8;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 867 877 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00015996 81.594 By MS/MS By matching 1 1 0.88942 0.85164 18.5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70379 0.74721 NaN 1 0 Median 1.124 0.97066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11323000 6446000 4877200 0 0 0 0 0 0 10875000 6238500 4636100 448570 207500 241070 0 0 0 0 0 0 11323 3293 11789 57325;57326 57469;57470 57469 2 GIPVELWAHYVEELNSTQR VEIPSEWHIELMLDRGIPVELWAHYVEELN ELWAHYVEELNSTQRVAVEDSVFLVFSLKK R G I Q R V 1 1 1 0 0 1 3 1 1 1 2 0 0 0 1 1 1 1 1 2 0 0 19 0 2240.1226 Q9H583;Q5T3Q7 Q9H583 762 780 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.057601 8.4943 By MS/MS 1 0.96114 1.0191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96114 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median 670830 363720 307110 0 0 0 0 0 0 0 0 0 0 0 0 670830 363720 307110 0 0 0 11324 3086 11790 57327 57471 57471 1 GIPVVEHK IDPENNLISIWNNGKGIPVVEHKVEKMYVP SIWNNGKGIPVVEHKVEKMYVPALIFGQLL K G I H K V 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 0 2 0 0 8 0 877.50215 P11388;J3KTB7;Q02880;E9PCY5 P11388 124 131 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0074447 67.032 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.0618 0.9626 13.088 6 Median NaN NaN NaN 0 0 Median 0.99688 0.86446 NaN 1 0 Median 0.77339 0.85844 NaN 1 0 Median 1.3361 1.1493 3.1092 2 0 Median 0.9138 0.95614 NaN 1 0 Median 1.131 0.9691 NaN 1 0 Median 13760000 7009600 6750000 0 0 0 714480 400150 314330 1603200 916000 687220 1255200 502440 752780 7430700 3848300 3582400 2756000 1342700 1413300 11325 1963;2704 11791 57328;57329;57330;57331;57332;57333 57472;57473;57474;57475 57472 4 GIPVVEHKVEK IDPENNLISIWNNGKGIPVVEHKVEKMYVP NNGKGIPVVEHKVEKMYVPALIFGQLLTSS K G I E K M 0 0 0 0 0 0 2 1 1 1 0 2 0 0 1 0 0 0 0 3 0 0 11 1 1233.7081 P11388;J3KTB7;Q02880;E9PCY5 P11388 124 134 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2;3 4.3434E-05 85.821 By matching By MS/MS By MS/MS By MS/MS 1 4 8 4 0.99306 1.018 15.613 17 Median 1.0995 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81793 0.94029 25.42 4 0 Median NaN NaN NaN 0 0 Median 0.94246 1.006 15.969 8 0 Median 1.1486 1.0275 5.5583 4 0 Median 65591000 32205000 33386000 357960 171690 186270 0 0 0 9005800 4875000 4130800 0 0 0 42241000 20813000 21428000 13987000 6346100 7640600 11326 1963;2704 11792 57334;57335;57336;57337;57338;57339;57340;57341;57342;57343;57344;57345;57346;57347;57348;57349;57350 57476;57477;57478;57479;57480;57481;57482;57483;57484;57485 57480 10 GIQEAQVELQK ENSRLLENMTEVVRKGIQEAQVELQKASEE VVRKGIQEAQVELQKASEERLLEEGVLRQI K G I Q K A 1 0 0 0 0 3 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1241.6616 Q6P996;H3BND4 Q6P996 616 626 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.0026022 52.579 By MS/MS By MS/MS 1 1 0.97791 0.90338 11.645 2 Median 1.0172 0.98092 NaN 1 0 Median 0.94011 0.83198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5342600 2909100 2433500 3357500 1884000 1473500 1985100 1025100 959980 0 0 0 0 0 0 0 0 0 0 0 0 11327 3164 11793 57351;57352 57486;57487 57486 2 GIQEEMEALVK CCDYSLHVDISEWHKGIQEEMEALVKDHGV EWHKGIQEEMEALVKDHGVNSFLVYMAFKD K G I V K D 1 0 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1245.6275 Q16555;A0A1C7CYX9 Q16555 147 157 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.0046341 47.603 By MS/MS By matching By matching By matching 1 1 1 1 0.90858 0.8524 22.436 4 Median 0.78059 0.73859 NaN 1 0 Median 1.32 1.1383 NaN 1 0 Median 1.0105 0.98376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81693 0.71752 NaN 1 0 Median 26287000 13270000 13017000 8625300 5006300 3619000 2572700 1072300 1500500 14655000 6961400 7693300 0 0 0 0 0 0 434540 230210 204340 11328 328 11794 57353;57354;57355;57356 57488 57488 1 GIRDDIEEEDDQEAYFR MKRLEEKDKERKNVKGIRDDIEEEDDQEAY RDDIEEEDDQEAYFRYMAENPTAGVVQEEE K G I F R Y 1 2 0 4 0 1 4 1 0 2 0 0 0 1 0 0 0 0 1 0 0 0 17 1 2098.908 Q86XP3;A0A0A0MSJ0;J3KRE3 Q86XP3 146 162 DDX42 ATP-dependent RNA helicase DDX42 yes no 2;3 2.8165E-33 153.72 By matching By MS/MS By matching 2 3 1 0.82482 0.94524 35.909 6 Median 1.2382 1.3418 66.195 2 0 Median NaN NaN NaN 0 0 Median 0.80944 0.98445 9.9475 3 2 Median 0.84048 0.82283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21682000 11074000 10608000 3726700 1308200 2418500 0 0 0 17151000 9400400 7750500 804680 365680 439010 0 0 0 0 0 0 11329 3302 11795 57357;57358;57359;57360;57361;57362 57489;57490;57491;57492 57489 4 GIRHEVININLK FCPFAERTRLVLKAKGIRHEVININLKNKP KAKGIRHEVININLKNKPEWFFKKNPFGLV K G I L K N 0 1 2 0 0 0 1 1 1 3 1 1 0 0 0 0 0 0 0 1 0 0 12 1 1404.8201 P78417;Q5TA02;Q5TA01 P78417 46 57 GSTO1 Glutathione S-transferase omega-1 yes no 2;3 1.4414E-05 164.97 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.0741 1.0611 17.847 8 Median 1.031 1.0536 22.194 3 0 Median 1.1883 1.0902 17.383 3 1 Median 1.2022 1.2449 NaN 1 0 Median 1.0898 0.96474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 181850000 82083000 99769000 140190000 63966000 76228000 35542000 15814000 19728000 4522700 1737300 2785400 1593800 566310 1027500 0 0 0 0 0 0 11330 2646 11796 57363;57364;57365;57366;57367;57368;57369;57370 57493;57494;57495;57496;57497;57498;57499;57500 57493 7 GIRPAINVGLSVSR ITDGQIFLETELFYKGIRPAINVGLSVSRV KGIRPAINVGLSVSRVGSAAQTRAMKQVAG K G I S R V 1 2 1 0 0 0 0 2 0 2 1 0 0 0 1 2 0 0 0 2 0 0 14 1 1437.8416 P25705 P25705 403 416 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2;3 2.0004E-42 224.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 1 3 1 1 1 1.0231 1.0462 25.231 11 Median 0.88703 0.89576 14.12 4 0 Median 1.2046 1.0863 NaN 1 0 Median 1.0231 1.105 6.7152 3 0 Median 1.0869 1 NaN 1 0 Median 1.8442 1.9895 NaN 1 0 Median 1.5438 1.3069 NaN 1 0 Median 329260000 176760000 152500000 288660000 158970000 129680000 13141000 5343400 7797400 18669000 9396400 9272500 1303500 538520 764940 7242200 2436000 4806200 246000 69940 176060 11331 2135 11797 57371;57372;57373;57374;57375;57376;57377;57378;57379;57380;57381 57501;57502;57503;57504;57505;57506;57507;57508;57509;57510;57511;57512;57513;57514 57505 14 GIRPGLTTVLAR RCFVTTNCALQFSSRGIRPGLTTVLARNLD SSRGIRPGLTTVLARNLDKNTVGYLQWRWG R G I A R N 1 2 0 0 0 0 0 2 0 1 2 0 0 0 1 0 2 0 0 1 0 0 12 1 1252.7616 Q9NVH1;Q5TH61;B1AK20 Q9NVH1 249 260 DNAJC11 DnaJ homolog subfamily C member 11 yes no 2;3 0.00048936 66.92 By MS/MS By matching 3 2 1.0559 1.0403 21.114 5 Median 1.0559 1.0403 16.196 3 0 Plateau 1.3913 1.2636 5.5005 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42998000 18973000 24025000 37348000 16455000 20892000 5649800 2517300 3132600 0 0 0 0 0 0 0 0 0 0 0 0 11332 4130 11798 57382;57383;57384;57385;57386 57515;57516 57516 2 GISAFLVPMPTPGLTLGK AAVVFASTDRALQNKGISAFLVPMPTPGLT AFLVPMPTPGLTLGKKEDKLGIRGSSTANL K G I G K K 1 0 0 0 0 0 0 3 0 1 3 1 1 1 3 1 2 0 0 1 0 0 18 0 1798.0063 P16219 P16219 209 226 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.044468 21.251 By MS/MS By matching 1 1 0.52088 0.53151 1.7812 2 Median 0.54372 0.52485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49901 0.53824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1713800 1019200 694530 1498000 880840 617150 0 0 0 215780 138400 77380 0 0 0 0 0 0 0 0 0 11333 2026 11799 57387;57388 57517 57517 1 GISAGAVQTAGK NKSPEAKPLPGKLPKGISAGAVQTAGKKGP LPKGISAGAVQTAGKKGPQSLFNAPRGKKR K G I G K K 3 0 0 0 0 1 0 3 0 1 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1058.572 P46087;F5GWB7;F5H709 P46087 80 91 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.0049662 42.21 By matching By MS/MS By matching By matching 1 1 1 1 1.1331 1.1684 25.795 4 Median 1.1258 1.1414 NaN 1 0 Median 0.89508 0.76628 NaN 1 0 Median 1.3506 1.4069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1405 1.196 NaN 1 0 Median NaN NaN NaN 0 0 Median 4992000 2495500 2496500 2041000 997610 1043400 1086300 628890 457430 649150 238930 410220 0 0 0 1215600 630040 585540 0 0 0 11334 2338 11800 57389;57390;57391;57392 57518 57518 1 GISATLHVTSNPVHAADSPAK LTQDLFGTGGNTTGKGISATLHVTSNPVHA HVTSNPVHAADSPAKASSASAPSSTPTGTT K G I A K A 4 0 1 1 0 0 0 1 2 1 1 1 0 0 2 3 2 0 0 2 0 0 21 0 2072.0651 Q6P4R8 Q6P4R8 1005 1025 NFRKB Nuclear factor related to kappa-B-binding protein yes yes 4 0.011865 18.956 By MS/MS 1 0.73203 0.79212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73203 0.79212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5401600 2568700 2833000 0 0 0 0 0 0 5401600 2568700 2833000 0 0 0 0 0 0 0 0 0 11335 3159 11801 57393 57519 57519 1 GISCMNTTLSESPFK HDHWKALVTKKTNGKGISCMNTTLSESPFK GISCMNTTLSESPFKCDPDAARAIVDALPP K G I F K C 0 0 1 0 1 0 1 1 0 1 1 1 1 1 1 3 2 0 0 0 0 0 15 0 1670.7644 Q15181 Q15181 239 253 PPA1 Inorganic pyrophosphatase yes yes 2 0.00034863 56.359 By MS/MS By matching 1 1 1.0044 0.90322 11.151 2 Median 1.0179 0.97733 NaN 1 0 Median 0.99101 0.83474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7377000 3237900 4139100 4638400 1884200 2754300 2738600 1353800 1384900 0 0 0 0 0 0 0 0 0 0 0 0 11336 2934 11802 57394;57395 57520 57520 1 GISDLAQHYLMR EDIIQLKPDVVITEKGISDLAQHYLMRANI TEKGISDLAQHYLMRANITAIRRVRKTDNN K G I M R A 1 1 0 1 0 1 0 1 1 1 2 0 1 0 0 1 0 0 1 0 0 0 12 0 1402.7027 P49368;B4DUR8 P49368 295 306 CCT3 T-complex protein 1 subunit gamma yes no 2;3 3.327E-06 138.4 By MS/MS By matching By MS/MS By matching By MS/MS 7 3 2 2 3 1.2841 1.1234 24.289 17 Median 1.1587 1.0855 12.407 7 1 Median 1.2883 1.1144 4.6113 3 0 Median 1.1154 1.1166 19.747 2 0 Median 1.3532 1.1453 2.7357 2 0 Median 2.0868 2.1713 20.272 3 0 Plateau NaN NaN NaN 0 0 Median 218200000 95902000 122300000 136850000 62037000 74815000 53825000 22832000 30993000 22541000 9503600 13037000 868940 422140 446810 4113700 1107800 3005900 0 0 0 11337 2379 11803;11804 57396;57397;57398;57399;57400;57401;57402;57403;57404;57405;57406;57407;57408;57409;57410;57411;57412 57521;57522;57523;57524;57525;57526;57527;57528;57529;57530;57531;57532;57533;57534 57533 1095 14 GISDPLTVFEQTEAAAR DAGACIYFYFAFNYRGISDPLTVFEQTEAA SDPLTVFEQTEAAAREEILANGGSLSHHHG R G I A R E 3 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 2 0 0 1 0 0 17 0 1803.9003 O00116;A0A1B0GWA2;A0A2R8YEL0;B8ZZ81 O00116 587 603 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 3.0432E-05 53.528 By matching By MS/MS 1 1 0.93441 0.89918 9.9209 2 Median NaN NaN NaN 0 0 Median 1.1039 0.96453 NaN 1 0 Median 0.79091 0.83827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4021700 2242100 1779500 0 0 0 780740 338890 441850 3240900 1903200 1337700 0 0 0 0 0 0 0 0 0 11338 1439 11805 57413;57414 57535;57536 57535 2 GISEDSHLESLQDVGQSAAPTFMISPETVTGTGK TPVPIKDMEIAQTQKGISEDSHLESLQDVG PTFMISPETVTGTGKKCSLPAEEDSVLEKL K G I G K K 2 0 0 2 0 2 3 4 1 2 2 1 1 1 2 5 4 0 0 2 0 0 34 0 3488.6617 E7EVA0;P27816 E7EVA0 617 650 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 1.5407E-10 49.199 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.58711 0.56424 37.329 5 Median 0.56547 0.55083 3.4027 2 0 Median 0.50529 0.45848 NaN 1 0 Median 1.1203 1.1963 NaN 1 0 Median 0.84726 0.70881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22270000 11354000 10916000 8082700 4872800 3210000 371850 260760 111090 12918000 5795700 7121800 897780 424850 472940 0 0 0 0 0 0 11339 895 11806 57415;57416;57417;57418;57419 57537;57538;57539;57540;57541;57542;57543;57544 57538 8 GISEDSHLESLQDVGQSAAPTFMISPETVTGTGKK TPVPIKDMEIAQTQKGISEDSHLESLQDVG TFMISPETVTGTGKKCSLPAEEDSVLEKLG K G I K K C 2 0 0 2 0 2 3 4 1 2 2 2 1 1 2 5 4 0 0 2 0 0 35 1 3616.7567 E7EVA0;P27816 E7EVA0 617 651 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3;4 2.1349E-23 65.134 By matching By MS/MS 1 2 1.2738 1.4665 43.787 3 Median 0.69935 0.69942 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2972 1.4923 2.4621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15985000 7037200 8947700 3257900 1794400 1463500 0 0 0 12727000 5242800 7484200 0 0 0 0 0 0 0 0 0 11340 895 11807 57420;57421;57422 57545;57546;57547;57548 57547 4 GISEETTTGVHNLYK NLIHTKYPQLLPGIRGISEETTTGVHNLYK GISEETTTGVHNLYKMMANGILKVPAINVN R G I Y K M 0 0 1 0 0 0 2 2 1 1 1 1 0 0 0 1 3 0 1 1 0 0 15 0 1647.8104 P23526 P23526 152 166 AHCY Adenosylhomocysteinase yes yes 2;3 4.7665E-36 215.08 By MS/MS By MS/MS By MS/MS By MS/MS 14 10 4 3 1.3125 1.1832 29.209 31 Median 1.2345 1.1332 14.154 14 1 Median 1.3888 1.1792 48.366 10 2 Median 1.3071 1.3019 9.7609 4 0 Median 1.4311 1.249 3.939 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1291700000 541990000 749680000 796140000 344400000 451740000 327640000 127460000 200180000 97954000 41768000 56186000 69941000 28357000 41584000 0 0 0 0 0 0 11341 2116 11808 57423;57424;57425;57426;57427;57428;57429;57430;57431;57432;57433;57434;57435;57436;57437;57438;57439;57440;57441;57442;57443;57444;57445;57446;57447;57448;57449;57450;57451;57452;57453 57549;57550;57551;57552;57553;57554;57555;57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567;57568;57569;57570;57571;57572;57573;57574;57575;57576;57577;57578;57579;57580;57581;57582;57583;57584;57585;57586;57587;57588;57589;57590;57591;57592 57591 44 GISEVLAR EEQVLDVKGYLSKVRGISEVLARRHMKVAF GYLSKVRGISEVLARRHMKVAFFGRTSNGK R G I A R R 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 843.48142 O95140;Q5JXC5 O95140 87 94 MFN2 Mitofusin-2 yes no 2 0.016506 49.358 By MS/MS By matching By matching 1 1 1 0.99027 1.0894 34.167 3 Median 1.5611 1.5469 NaN 1 0 Median 0.92337 0.78114 NaN 1 0 Median 0.99027 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10184000 4751700 5432100 1638700 583690 1055000 4376400 2053500 2322900 4168700 2114500 2054200 0 0 0 0 0 0 0 0 0 11342 1747 11809 57454;57455;57456 57593 57593 1 GISHVIVDEIHER CTVGVLLRKLEAGIRGISHVIVDEIHERDI IRGISHVIVDEIHERDINTDFLLVVLRDVV R G I E R D 0 1 0 1 0 0 2 1 2 3 0 0 0 0 0 1 0 0 0 2 0 0 13 0 1502.7841 Q08211 Q08211 504 516 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.9721E-53 233.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 7 4 9 9 1.3138 1.1941 18.852 38 Median 1.3485 1.2855 11.635 6 2 Median 1.3725 1.156 16.559 4 0 Median 1.1683 1.2824 24.159 7 2 Median 1.4689 1.2736 7.6618 4 0 Median 1.1698 1.1618 16.969 8 1 Median 1.4688 1.189 24.54 9 0 Median 1604900000 703970000 900980000 105250000 44081000 61172000 104030000 43120000 60914000 861560000 386600000 474950000 59229000 22119000 37110000 385120000 172910000 212210000 89756000 35128000 54628000 11343 2736 11810 57457;57458;57459;57460;57461;57462;57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473;57474;57475;57476;57477;57478;57479;57480;57481;57482;57483;57484;57485;57486;57487;57488;57489;57490;57491;57492;57493;57494;57495;57496 57594;57595;57596;57597;57598;57599;57600;57601;57602;57603;57604;57605;57606;57607;57608;57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619;57620;57621;57622;57623;57624;57625;57626;57627;57628;57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648 57609 54 GISLNPEQWSQLK EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ RKGISLNPEQWSQLKEQISDIDDAVRKL__ K G I L K E 0 0 1 0 0 2 1 1 0 1 2 1 0 0 1 2 0 1 0 0 0 0 13 0 1498.778 P53999 P53999 102 114 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 6.0699E-10 172.27 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1 1.0312 0.90218 16.866 7 Median 0.89727 0.84289 NaN 1 0 Median 1.0793 0.91851 15.1 3 0 Plateau 1.0312 0.97126 NaN 1 0 Median 0.99293 0.82206 NaN 1 0 Median 1.083 1.2176 NaN 1 0 Median NaN NaN NaN 0 0 Median 155660000 75517000 80139000 45010000 22283000 22727000 12230000 5747000 6482600 90385000 43516000 46869000 2073200 1041100 1032200 5958100 2930600 3027500 0 0 0 11344 2478 11811 57497;57498;57499;57500;57501;57502;57503 57649;57650;57651;57652;57653;57654;57655;57656;57657;57658;57659;57660;57661 57650 13 GISLNPEQWSQLKEQISDIDDAVR EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ SQLKEQISDIDDAVRKL_____________ K G I V R K 1 1 1 3 0 3 2 1 0 3 2 1 0 0 1 3 0 1 0 1 0 0 24 1 2740.3668 P53999 P53999 102 125 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 3 4.163E-29 110.44 By MS/MS 1 0.87874 0.99402 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87874 0.99402 NaN 1 0 Median NaN NaN NaN 0 0 Median 23760000 11259000 12501000 0 0 0 0 0 0 0 0 0 0 0 0 23760000 11259000 12501000 0 0 0 11345 2478 11812 57504 57662;57663;57664;57665 57665 4 GISPVPINLR QEIEAETDRVTGTNKGISPVPINLRVYSPH TGTNKGISPVPINLRVYSPHVLNLTLIDLP K G I L R V 0 1 1 0 0 0 0 1 0 2 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1064.6342 P50570;A0A1B0GUX5 P50570 114 123 DNM2 Dynamin-2 no no 2 0.00034189 86.794 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 1 3 0.74607 0.64582 25.313 10 Median 0.55727 0.53709 NaN 1 0 Median 0.61502 0.53227 NaN 1 0 Median 0.79418 0.78944 0.55134 2 0 Median 0.72793 0.6182 3.6211 2 0 Median 1.1939 1.2512 NaN 1 0 Median 0.79687 0.65865 6.8894 3 0 Plateau 63821000 36491000 27331000 9619900 5838300 3781600 5208400 3059700 2148700 37933000 21605000 16328000 3656500 2027000 1629600 4638300 2402900 2235400 2765400 1558600 1206800 11346 2417 11813 57505;57506;57507;57508;57509;57510;57511;57512;57513;57514 57666;57667;57668;57669;57670;57671;57672;57673 57667 8 GISQEQMNEFR TINEVENQILTRDAKGISQEQMNEFRASFN RDAKGISQEQMNEFRASFNHFDRDHSGTLG K G I F R A 0 1 1 0 0 2 2 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1337.6034 P12814;H9KV75;H7C5W8;H0YJW3;H0YJ11 P12814 742 752 ACTN1 Alpha-actinin-1 yes no 2 7.6528E-23 204.7 By MS/MS By MS/MS 2 4 1.0855 0.94395 12.808 4 Median 1.2086 1.1619 NaN 1 0 Median 1.0557 0.92373 5.7352 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53725000 25441000 28284000 36888000 17444000 19445000 16837000 7997100 8839700 0 0 0 0 0 0 0 0 0 0 0 0 11347 1983 11814;11815 57515;57516;57517;57518;57519;57520 57674;57675;57676;57677;57678;57679;57680;57681;57682 57674 763 9 GISQEQMQEFR TINEVENQILTRDAKGISQEQMQEFRASFN RDAKGISQEQMQEFRASFNHFDKDHGGALG K G I F R A 0 1 0 0 0 3 2 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1351.619 O43707;F5GXS2;H7C144 O43707 761 771 ACTN4 Alpha-actinin-4 yes no 2 7.6528E-23 204.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1.1126 1.0038 23.301 10 Median 1.133 1.0955 2.9358 3 0 Median 0.96692 0.8221 11.667 4 0 Median 1.3706 1.4521 NaN 1 0 Median 1.1052 0.9381 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.584 1.2891 NaN 1 0 Median 228230000 106880000 121360000 143720000 65495000 78223000 59173000 29166000 30007000 18369000 9288100 9081400 5905900 2601700 3304200 0 0 0 1063600 323860 739720 11348 1585 11816;11817 57521;57522;57523;57524;57525;57526;57527;57528;57529;57530 57683;57684;57685;57686;57687;57688;57689;57690;57691;57692;57693;57694;57695;57696;57697;57698;57699;57700 57693 512 18 GISQTNLITTVTPEK MSAAEVGTGQYATTKGISQTNLITTVTPEK GISQTNLITTVTPEKKAEEERDEEEDKRRK K G I E K K 0 0 1 0 0 1 1 1 0 2 1 1 0 0 1 1 4 0 0 1 0 0 15 0 1600.8672 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A1B0GTF8;A0A0J9YW26;J3KT37 A0A0A0MRA8 476 490 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 0.014815 43.628 By MS/MS 1 0.96376 0.94682 NaN 1 Median 0.96376 0.94682 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3959200 1825200 2134000 3959200 1825200 2134000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11349 156 11818 57531 57701 57701 1 GISSSNEGVEEPSK TYTTRDELVAKVKKRGISSSNEGVEEPSKK RGISSSNEGVEEPSKKRVIEGKNSSAVEQD R G I S K K 0 0 1 0 0 0 3 2 0 1 0 1 0 0 1 4 0 0 0 1 0 0 14 0 1418.6525 Q9NXV6 Q9NXV6 129 142 CDKN2AIP CDKN2A-interacting protein yes yes 2 5.5273E-08 112.13 By MS/MS 2 0.81515 0.88217 12.444 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81515 0.88217 12.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4480800 2537100 1943700 0 0 0 0 0 0 4480800 2537100 1943700 0 0 0 0 0 0 0 0 0 11350 4169 11819 57532;57533 57702;57703 57702 2 GISTKPVYIPEVELNHK KRDEFEFLEKASKLRGISTKPVYIPEVELN STKPVYIPEVELNHKLIKGIHQSTIDLKNE R G I H K L 0 0 1 0 0 0 2 1 1 2 1 2 0 0 2 1 1 0 1 2 0 0 17 1 1923.0466 Q14258;A0A3B3IUA7 Q14258 316 332 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 3;4 5.9538E-06 77.222 By MS/MS By matching By matching By MS/MS 4 1 1 2 0.72391 0.77593 23.411 8 Median 0.70471 0.74086 14.164 4 0 Median 1.1541 1.0978 NaN 1 0 Median 0.46634 0.52338 NaN 1 0 Median 0.93014 0.85884 0.92904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43436000 24141000 19295000 32797000 17733000 15064000 2954800 1382200 1572500 6396400 4471800 1924600 1288200 554570 733660 0 0 0 0 0 0 11351 2870 11820 57534;57535;57536;57537;57538;57539;57540;57541 57704;57705;57706;57707 57704 4 GISVHISNAEPK DQIAQSLCGEDLIIKGISVHISNAEPKHNS IIKGISVHISNAEPKHNSNRQLERSGRFGG K G I P K H 1 0 1 0 0 0 1 1 1 2 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1250.6619 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;A0A087WX29;A0A1W2PNU8;A0A087WV68;A0A087WXQ5;A0A087WXV3;A0A087WX67;A0A087WW61;A0A087WZC9;A0A087WYE7;K7EL26;A0A087WTZ4 Q13148 252 263 TARDBP TAR DNA-binding protein 43 yes no 2;3 1.3324E-09 175.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 8 7 6 7 1.0056 0.89116 11.604 37 Median 1.0069 0.94456 12.535 3 1 Median 1.0516 0.90192 8.2265 6 0 Median 0.86289 0.86155 17.624 8 0 Median 1.0607 0.93914 9.1043 7 0 Median 0.83852 0.8475 8.4101 6 1 Median 1.0631 0.86618 5.218 7 0 Median 641640000 324510000 317130000 13665000 6499300 7165400 19702000 9193600 10508000 232220000 123900000 108320000 177730000 84511000 93222000 112890000 59398000 53492000 85438000 41011000 44427000 11352 2789 11821 57542;57543;57544;57545;57546;57547;57548;57549;57550;57551;57552;57553;57554;57555;57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567;57568;57569;57570;57571;57572;57573;57574;57575;57576;57577;57578 57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770;57771;57772;57773 57759 66 GISVNAEQVR CKNSHCAQTVSSVFKGISVNAEQVRIELEP SSVFKGISVNAEQVRIELEPPDKAKPLGTV K G I V R I 1 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1071.5673 Q9H583;Q5T3Q7 Q9H583 1153 1162 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00072673 101.64 By MS/MS 1 0.94944 1.0528 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94944 1.0528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3320500 1857400 1463100 0 0 0 0 0 0 3320500 1857400 1463100 0 0 0 0 0 0 0 0 0 11353 3086 11822 57579 57774 57774 1 GITAFIVEK IVYAKTDLAAVPASRGITAFIVEKGMPGFS AVPASRGITAFIVEKGMPGFSTSKKLDKLG R G I E K G 1 0 0 0 0 0 1 1 0 2 0 1 0 1 0 0 1 0 0 1 0 0 9 0 976.55933 A0A0S2Z4K7;A0A0A0MT83;P26440;H0YLC3;H7C4G6;H0YKV0 A0A0S2Z4K7 191 199 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2 0.014224 58.981 By MS/MS 1 1.3809 1.2855 NaN 1 Median 1.3809 1.2855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9213100 4038400 5174700 9213100 4038400 5174700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11354 187 11823 57580 57775 57775 1 GITALQADIK DYNGDMDFKIAGTNKGITALQADIKLPGIP AGTNKGITALQADIKLPGIPIKIVMEAIQQ K G I I K L 2 0 0 1 0 1 0 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1028.5866 Q8TCS8 Q8TCS8 553 562 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.0070645 48.283 By matching By matching By MS/MS By matching By matching 1 2 1 2 1 1.1423 1.0191 29.002 7 Median NaN NaN NaN 0 0 Median 1.5646 1.3718 NaN 1 0 Median 0.98233 1.0213 20.583 2 0 Median 1.3183 1.1429 NaN 1 0 Median 0.63521 0.70961 33.517 2 0 Median 1.1976 1.0191 NaN 1 0 Median 37291000 18119000 19173000 0 0 0 3712200 1451600 2260600 15689000 7940800 7748100 3196600 1315000 1881600 12263000 6271000 5992400 2430300 1140400 1289900 11355 3467 11824 57581;57582;57583;57584;57585;57586;57587 57776 57776 1 GITEPPFGIFVFNK AEERGLKITYKYTGKGITEPPFGIFVFNKD KGITEPPFGIFVFNKDTGELNVTSILDREE K G I N K D 0 0 1 0 0 0 1 2 0 2 0 1 0 3 2 0 1 0 0 1 0 0 14 0 1564.829 Q14126;J3KSI6 Q14126 93 106 DSG2 Desmoglein-2 yes no 2 0.026131 26.514 By MS/MS By matching 2 1 0.66959 0.69502 9.723 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64842 0.66969 5.2506 2 0 Median 0.89009 0.78247 NaN 1 0 Median 2216400 1300700 915780 0 0 0 0 0 0 0 0 0 0 0 0 2153000 1267200 885760 63465 33448 30017 11356 2855 11825 57588;57589;57590 57777 57777 1 GITEQQKEGLEIVK GPFRLGGHGPSFPLKGITEQQKEGLEIVKM KGITEQQKEGLEIVKMVMISLEGEDGLDEI K G I V K M 0 0 0 0 0 2 3 2 0 2 1 2 0 0 0 0 1 0 0 1 0 0 14 1 1570.8566 P13010 P13010 196 209 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 6.2656E-11 179.35 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 4 2 2 2 1.0905 1.1631 42.434 12 Median 1.1876 1.2138 0.92727 2 0 Median NaN NaN NaN 0 0 Median 1.0091 1.1356 2.5686 4 0 Median 1.6223 1.5849 24.287 2 0 Median 0.54577 0.62102 98.082 2 1 Median 1.1417 1.0321 9.0982 2 0 Median 163490000 75898000 87591000 95096000 42314000 52782000 0 0 0 50875000 23800000 27076000 2170600 794110 1376500 12634000 7613600 5020100 2713400 1376400 1337000 11357 1986 11826 57591;57592;57593;57594;57595;57596;57597;57598;57599;57600;57601;57602 57778;57779;57780;57781;57782;57783;57784;57785;57786;57787;57788;57789 57781 12 GITFDSGGISIK GSPNANEPPLVFVGKGITFDSGGISIKASA VGKGITFDSGGISIKASANMDLMRADMGGA K G I I K A 0 0 0 1 0 0 0 3 0 3 0 1 0 1 0 2 1 0 0 0 0 0 12 0 1193.6292 P28838;H0Y9Q1 P28838 283 294 LAP3 Cytosol aminopeptidase yes no 2 0.0040165 70.552 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11358 2167 11827 57603 57790 57790 1 GITGVDLFGTTDAVVK RKKNLSPGAVESDVRGITGVDLFGTTDAVV ITGVDLFGTTDAVVKHVLEGHDRGVNWAAF R G I V K H 1 0 0 2 0 0 0 3 0 1 1 1 0 1 0 0 3 0 0 3 0 0 16 0 1591.8457 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 183 198 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 1.71E-10 126.76 By MS/MS By MS/MS 3 1 1.1828 1.0737 14.202 4 Median 1.098 1.0684 16.67 3 1 Median 1.2742 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40868000 18496000 22372000 30894000 14060000 16834000 9973300 4436000 5537400 0 0 0 0 0 0 0 0 0 0 0 0 11359 2473 11828 57604;57605;57606;57607 57791;57792;57793;57794;57795;57796 57792 6 GITGVEDK KHQPTAIIAKTFKGRGITGVEDKESWHGKP AKTFKGRGITGVEDKESWHGKPLPKNMAEQ R G I D K E 0 0 0 1 0 0 1 2 0 1 0 1 0 0 0 0 1 0 0 1 0 0 8 0 817.41815 P29401;A0A0B4J1R6;E9PFF2 P29401 247 254 TKT Transketolase yes no 2 0.061824 47.657 By MS/MS 1 0.99145 0.83727 NaN 1 Median NaN NaN NaN 0 0 Median 0.99145 0.83727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6360500 2947900 3412600 0 0 0 6360500 2947900 3412600 0 0 0 0 0 0 0 0 0 0 0 0 11360 2173 11829 57608 57797 57797 1 GITGVEDKESWHGKPLPK KHQPTAIIAKTFKGRGITGVEDKESWHGKP GVEDKESWHGKPLPKNMAEQIIQEIYSQIQ R G I P K N 0 0 0 1 0 0 2 3 1 1 1 3 0 0 2 1 1 1 0 1 0 0 18 2 1977.032 P29401;A0A0B4J1R6;E9PFF2 P29401 247 264 TKT Transketolase yes no 3;4;5 5.4918E-12 91.616 By MS/MS By MS/MS By MS/MS By MS/MS 6 2 1 2 0.72824 0.73748 25.496 10 Median 0.71694 0.7434 34.84 5 0 Median 0.84486 0.81118 8.3997 2 1 Median 0.61373 0.70955 NaN 1 0 Median 0.74506 0.65383 12.14 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 323640000 182640000 141010000 241950000 137200000 104750000 47737000 25449000 22288000 24592000 14523000 10069000 9367000 5466100 3900900 0 0 0 0 0 0 11361 2173 11830 57609;57610;57611;57612;57613;57614;57615;57616;57617;57618;57619 57798;57799;57800;57801;57802;57803;57804;57805;57806;57807;57808;57809;57810;57811;57812;57813;57814;57815 57812 17 GITHIGYTDLPSR GNFETTKPGELYIHKGITHIGYTDLPSRMA HKGITHIGYTDLPSRMATQASTLYSNNITK K G I S R M 0 1 0 1 0 0 0 2 1 2 1 0 0 0 1 1 2 0 1 0 0 0 13 0 1428.7361 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 367 379 NNT NAD(P) transhydrogenase, mitochondrial yes no 2;3 1.0439E-07 146.16 By MS/MS By MS/MS 5 4 0.88148 0.82729 29.098 9 Median 0.69461 0.65183 15.271 5 2 Median 1.354 1.1189 10.301 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 282840000 143090000 139750000 152290000 87462000 64827000 130550000 55632000 74919000 0 0 0 0 0 0 0 0 0 0 0 0 11362 2814 11831 57620;57621;57622;57623;57624;57625;57626;57627;57628 57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826 57817 11 GITINAAHVEYSTAAR KKYEEIDNAPEERARGITINAAHVEYSTAA ITINAAHVEYSTAARHYAHTDCPGHADYVK R G I A R H 4 1 1 0 0 0 1 1 1 2 0 0 0 0 0 1 2 0 1 1 0 0 16 0 1672.8533 P49411 P49411 105 120 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 5.5323E-21 192.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 6 3 2 1 1 1.0847 1.0405 25.831 20 Median 1.0236 0.96286 7.5311 7 1 Median 1.2714 1.0986 20.2 6 0 Median 1.0392 1.0091 18.752 3 0 Median 1.4269 1.2282 5.3055 2 0 Median 2.0723 2.2044 NaN 1 0 Median 2.4208 1.849 NaN 1 0 Median 302920000 143600000 159320000 120670000 60783000 59891000 82837000 39017000 43820000 57058000 26654000 30404000 40076000 16166000 23910000 1479700 771920 707750 797400 212230 585170 11363 2382 11832 57629;57630;57631;57632;57633;57634;57635;57636;57637;57638;57639;57640;57641;57642;57643;57644;57645;57646;57647;57648 57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841;57842;57843;57844;57845;57846;57847;57848 57827 22 GITLHPELFSIDNGLLTPTMK RLGKDSGLKPFEQVKGITLHPELFSIDNGL ELFSIDNGLLTPTMKAKRPELRNYFRSQID K G I M K A 0 0 1 1 0 0 1 2 1 2 4 1 1 1 2 1 3 0 0 0 0 0 21 0 2296.2137 E7EPM6;P33121;B7Z3Z9;H0Y9U7 E7EPM6 621 641 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 3 0.058955 7.6218 By matching By MS/MS 1 1 0.72007 0.67171 56.309 2 Median 0.4475 0.45109 NaN 1 0 Median 1.1586 1.0002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635600 1909100 1726400 1246800 874340 372470 2388800 1034800 1354000 0 0 0 0 0 0 0 0 0 0 0 0 11364 871 11833 57649;57650 57849 57849 1 GITNLCVIGGDGSLTGANLFR TREGRLKAACNLLQRGITNLCVIGGDGSLT VIGGDGSLTGANLFRKEWSGLLEELARNGQ R G I F R K 1 1 2 1 1 0 0 5 0 2 3 0 0 1 0 1 2 0 0 1 0 0 21 0 2134.0841 Q01813;Q5VSR5;V9GYV7 Q01813 118 138 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0012851 27.969 By MS/MS 1 1.3374 1.1611 NaN 1 Median NaN NaN NaN 0 0 Median 1.3374 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2328500 885630 1442900 0 0 0 2328500 885630 1442900 0 0 0 0 0 0 0 0 0 0 0 0 11365 2692 11834 57651 57850 57850 1 GITPLLER GFWAAGWRVWLFFMRGITPLLERWLGNLLA VWLFFMRGITPLLERWLGNLLARQFEGRHS R G I E R W 0 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 Q6P2Q9;I3L0J9 Q6P2Q9 643 650 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0023383 113.7 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1.1294 0.98777 6.6325 7 Median 0.992 0.98777 NaN 1 0 Median 1.2341 1.0493 NaN 1 0 Median 0.79522 0.86674 NaN 1 0 Median 1.1406 0.99742 2.2498 2 0 Median 1.0215 1.0474 NaN 1 0 Median 1.1403 0.94807 NaN 1 0 Median 44655000 22025000 22630000 2365900 1172000 1194000 3432000 1561100 1870900 17788000 9181300 8607000 4769300 2183200 2586100 13561000 6597600 6963900 2737800 1330000 1407800 11366 3157 11835 57652;57653;57654;57655;57656;57657;57658 57851;57852;57853;57854;57855;57856;57857;57858;57859;57860 57851 10 GITPNFMK FRRIISKEGIPGLYRGITPNFMKVLPAVGI GIPGLYRGITPNFMKVLPAVGISYVVYENM R G I M K V 0 0 1 0 0 0 0 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 8 0 906.46332 Q6NUK1 Q6NUK1 446 453 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.007454 66.993 By MS/MS By MS/MS 1 1 1.0142 0.90269 31.575 2 Median 0.77504 0.72206 NaN 1 0 Median 1.3271 1.1285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15307000 6802000 8505100 9500600 4566100 4934500 5806500 2235900 3570600 0 0 0 0 0 0 0 0 0 0 0 0 11367 3143 11836 57659;57660 57861;57862 57861 2 GITQNALDYMK NNSNGHQLKDLILQKGITQNALDYMKKHIP ILQKGITQNALDYMKKHIPSAKNLDADIWK K G I M K K 1 0 1 1 0 1 0 1 0 1 1 1 1 0 0 0 1 0 1 0 0 0 11 0 1252.6122 Q5T4S7;X6R960 Q5T4S7 4686 4696 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0016318 73.985 By MS/MS By MS/MS 1 1 1.1158 1.0487 0.99124 2 Median 1.0399 1.0414 NaN 1 1 Median 1.1973 1.0561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20328000 9347500 10980000 10655000 5093200 5561800 9672700 4254400 5418300 0 0 0 0 0 0 0 0 0 0 0 0 11368 3089 11837 57661;57662 57863;57864;57865 57865 3 GITSFLVDR LFLVMANVDPTIGYKGITSFLVDRDTPGLH PTIGYKGITSFLVDRDTPGLHIGKPENKLG K G I D R D 0 1 0 1 0 0 0 1 0 1 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1006.5447 P45954 P45954 231 239 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.0054507 57.59 By MS/MS By matching By MS/MS 1 2 1 1.3727 1.2354 17.383 4 Median 1.2108 1.2026 NaN 1 0 Median 1.3727 1.1799 10.312 2 0 Median 1.5239 1.6453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13196000 5504600 7691700 7594300 3370000 4224300 3825400 1460200 2365200 1776600 674440 1102200 0 0 0 0 0 0 0 0 0 11369 2330 11838 57663;57664;57665;57666 57866;57867 57866 2 GITYDDPIK VAEGRALMSVKEMAKGITYDDPIKTSWTPP VKEMAKGITYDDPIKTSWTPPRYVLSMSEE K G I I K T 0 0 0 2 0 0 0 1 0 2 0 1 0 0 1 0 1 0 1 0 0 0 9 0 1020.5128 Q9UJV9;A0A499FJW5;H0YA06;D6RGI7 Q9UJV9 135 143 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 2 0.049787 31.074 By MS/MS 1 1.3055 1.3401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3055 1.3401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8410900 3682900 4728000 0 0 0 0 0 0 8410900 3682900 4728000 0 0 0 0 0 0 0 0 0 11370 4299 11839 57667 57868 57868 1 GIVDLIEER AAFMQIPMGLEGNFKGIVDLIEERAIYFDG LEGNFKGIVDLIEERAIYFDGDFGQIVRYG K G I E R A 0 1 0 1 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1042.5659 Q96RP9;F8WAU4;C9IZ01 Q96RP9 213 221 GFM1 Elongation factor G, mitochondrial yes no 2 0.0028118 71.379 By MS/MS By MS/MS By matching By matching By matching 2 3 1 2 2 1.2113 1.0418 34.699 10 Median 1.3056 1.2421 41.251 2 1 Median 1.3273 1.1471 58.651 3 0 Median 0.75119 0.7745 NaN 1 0 Median 1.1926 1.0064 1.262 2 0 Median NaN NaN NaN 0 0 Median 1.2992 1.0984 3.8522 2 0 Median 21277000 9541200 11736000 10694000 4743900 5950300 8937200 3970600 4966500 541300 343680 197630 666600 276850 389750 0 0 0 438080 206170 231900 11371 3728 11840 57668;57669;57670;57671;57672;57673;57674;57675;57676;57677 57869;57870 57870 2 GIVDQSQQAYQEAFEISK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE DQSQQAYQEAFEISKKEMQPTHPIRLGLAL K G I S K K 2 0 0 1 0 4 2 1 0 2 0 1 0 1 0 2 0 0 1 1 0 0 18 0 2039.98 P63104;B0AZS6;B7Z2E6;H0YB80 P63104 140 157 YWHAZ 14-3-3 protein zeta/delta yes no 2;3 2.8927E-06 80.522 By MS/MS By matching By MS/MS By matching By matching 3 1 2 1 1 1.1727 1.0428 10.538 8 Median 1.2408 1.1414 5.8138 3 0 Plateau 1.1248 0.95497 NaN 1 0 Median 1.1004 1.0428 1.1807 2 0 Median 1.2267 1.0135 NaN 1 0 Median 1.3146 1.3452 NaN 1 0 Median NaN NaN NaN 0 0 Median 200590000 93031000 107560000 190860000 88280000 102580000 554780 276720 278060 6360300 3116700 3243600 1165300 499730 665580 1658200 857960 800220 0 0 0 11372 2618 11841 57678;57679;57680;57681;57682;57683;57684;57685 57871;57872;57873;57874;57875;57876;57877;57878 57874 8 GIVDQSQQAYQEAFEISKK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE QSQQAYQEAFEISKKEMQPTHPIRLGLALN K G I K K E 2 0 0 1 0 4 2 1 0 2 0 2 0 1 0 2 0 0 1 1 0 0 19 1 2168.075 P63104;B0AZS6;B7Z2E6;H0YB80 P63104 140 158 YWHAZ 14-3-3 protein zeta/delta yes no 2;3 1.1202E-20 164.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 1 1 1 1 1 1.144 1.0832 11.268 10 Median 1.0656 1.0765 9.5536 5 0 Median 1.1688 1.0633 NaN 1 0 Median 1.1188 1.1126 NaN 1 0 Median 1.1646 1.0488 NaN 1 0 Median 1.2711 1.3549 NaN 1 0 Median 1.5444 1.3404 NaN 1 0 Median 803870000 381450000 422420000 719900000 343380000 376520000 53635000 23850000 29785000 20676000 9753200 10923000 3754800 1644200 2110600 5662800 2746400 2916400 235720 73009 162710 11373 2618 11842 57686;57687;57688;57689;57690;57691;57692;57693;57694;57695 57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893;57894;57895 57888 17 GIVDSITGQR TENLEKISITEGIERGIVDSITGQRLLEAQ EGIERGIVDSITGQRLLEAQACTGGIIHPT R G I Q R L 0 1 0 1 0 1 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1044.5564 P15924 P15924 2640 2649 DSP Desmoplakin yes yes 2 2.7139E-07 133.55 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 1.2237 1.0344 16.317 10 Median 0.84204 0.84067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4124 1.1957 6.7821 2 0 Median 0.90481 0.94112 6.3277 3 1 Median 1.2956 1.0651 14.934 4 1 Median 47441000 24156000 23285000 5878300 3904000 1974300 0 0 0 0 0 0 3046000 1289900 1756100 27049000 14027000 13021000 11468000 4934800 6533300 11374 2021 11843 57696;57697;57698;57699;57700;57701;57702;57703;57704;57705 57896;57897;57898;57899;57900;57901;57902;57903;57904 57897 9 GIVEESVTGVHR HWIYKKYPNMFKKIKGIVEESVTGVHRLYQ KIKGIVEESVTGVHRLYQLSKAGKLCVPAM K G I H R L 0 1 0 0 0 0 2 2 1 1 0 0 0 0 0 1 1 0 0 3 0 0 12 0 1281.6677 H0Y8B3;O43865;Q96HN2 H0Y8B3 238 249 AHCYL2;AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 2;3 3.4681E-66 191.85 By MS/MS By MS/MS By MS/MS By matching By matching 5 7 2 1 1 1.1341 1.038 48.129 14 Median 1.1161 1.1054 5.2482 4 1 Median 0.92397 0.81096 26.142 6 2 Median 1.1525 1.2109 6.5055 2 0 Median 1.1383 0.9825 NaN 1 0 Median NaN NaN NaN 0 0 Median 5.3292 4.6194 NaN 1 0 Median 100360000 46875000 53489000 38034000 18662000 19372000 49819000 24097000 25722000 4667900 1938800 2729200 1275800 634270 641520 0 0 0 6567900 1543900 5024000 11375 1160 11844 57706;57707;57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721 57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915;57916 57908 12 GIVEFASK RAVVIVDDRGRSTGKGIVEFASKPAARKAF RGRSTGKGIVEFASKPAARKAFERCSEGVF K G I S K P 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 849.45962 P23246 P23246 414 421 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.0035134 91.626 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 2 1.2783 1.117 8.4443 9 Median NaN NaN NaN 0 0 Median 1.2783 1.117 NaN 1 0 Median 1.1063 1.1481 4.4432 2 0 Median 1.4124 1.219 13.911 3 0 Median 1.0142 1.0348 NaN 1 1 Median 1.4133 1.1561 8.2526 2 0 Median 178290000 80041000 98247000 0 0 0 8579500 3864000 4715500 93517000 44089000 49427000 58324000 23914000 34410000 13764000 6501200 7263000 4103700 1672200 2431400 11376 2107 11845 57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732 57917;57918;57919;57920;57921;57922;57923;57924;57925;57926;57927;57928;57929;57930;57931;57932;57933 57918 17 GIVEFASKPAAR RAVVIVDDRGRSTGKGIVEFASKPAARKAF TGKGIVEFASKPAARKAFERCSEGVFLLTT K G I A R K 3 1 0 0 0 0 1 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1244.6877 P23246 P23246 414 425 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 1.0826E-09 180.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 6 6 9 7 1.0702 1.08 13.98 31 Median 1.18 1.227 3.957 2 0 Median 1.0049 1.0054 NaN 1 0 Median 0.91765 1.0073 6.7475 6 1 Median 1.4151 1.3178 17.447 6 1 Median 0.95083 1.0321 5.6399 9 1 Median 1.2135 1.0907 6.9317 7 0 Median 1002800000 498210000 504610000 10589000 4894400 5694900 1920000 934960 985010 379960000 194360000 185600000 50041000 21009000 29032000 415770000 211350000 204420000 144550000 65671000 78882000 11377 2107 11846 57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756;57757;57758;57759;57760;57761;57762;57763 57934;57935;57936;57937;57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968;57969;57970;57971 57950 38 GIVEFSGK RAVVIVDDRGRPSGKGIVEFSGKPAARKAL RGRPSGKGIVEFSGKPAARKALDRCSEGSF K G I G K P 0 0 0 0 0 0 1 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 835.44397 Q15233;H7C367;C9IZL7 Q15233 191 198 NONO Non-POU domain-containing octamer-binding protein yes no 1;2 0.0035088 91.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 1 2 1.3609 1.166 77.986 12 Median NaN NaN NaN 0 0 Median 1.6551 1.404 16.107 3 0 Plateau 1.0442 1.0056 112.59 3 1 Median 1.3609 1.166 84.825 4 1 Median 1.5324 1.46 NaN 1 0 Median 0.47821 0.42621 NaN 1 0 Median 220500000 70395000 150100000 0 0 0 14116000 5914200 8201600 92331000 34780000 57551000 105260000 25120000 80143000 6855800 3092600 3763200 1933800 1488100 445720 11378 2935 11847 57764;57765;57766;57767;57768;57769;57770;57771;57772;57773;57774;57775;57776 57972;57973;57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986 57972 14 GIVEFSGKPAAR RAVVIVDDRGRPSGKGIVEFSGKPAARKAL SGKGIVEFSGKPAARKALDRCSEGSFLLTT K G I A R K 2 1 0 0 0 0 1 2 0 1 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1230.6721 Q15233;H7C367;C9IZL7 Q15233 191 202 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 2.1373E-11 180.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 9 11 11 11 1.1343 1.1301 19.05 47 Median 1.2442 1.2472 17.513 4 1 Median 1.0687 0.97513 12.093 5 1 Median 1.0069 1.0663 28.984 9 1 Median 1.2434 1.1593 5.4459 11 1 Median 0.93872 1.0106 12.696 8 2 Median 1.384 1.2117 17.928 10 5 Median 989110000 478090000 511020000 37302000 17189000 20113000 25549000 11426000 14124000 280650000 147030000 133610000 255240000 112630000 142620000 268050000 136820000 131230000 122310000 52994000 69318000 11379 2935 11848 57777;57778;57779;57780;57781;57782;57783;57784;57785;57786;57787;57788;57789;57790;57791;57792;57793;57794;57795;57796;57797;57798;57799;57800;57801;57802;57803;57804;57805;57806;57807;57808;57809;57810;57811;57812;57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827 57987;57988;57989;57990;57991;57992;57993;57994;57995;57996;57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048;58049;58050;58051;58052;58053;58054;58055;58056;58057;58058;58059;58060;58061;58062;58063;58064;58065 58013 79 GIVESSVTSAVSGK TEKGSKDTDICSSAKGIVESSVTSAVSGKD KGIVESSVTSAVSGKDEVTPVPGGCEGPMT K G I G K D 1 0 0 0 0 0 1 2 0 1 0 1 0 0 0 4 1 0 0 3 0 0 14 0 1319.6933 Q8NFC6 Q8NFC6 1952 1965 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.011642 33.088 By matching By MS/MS 1 1 1.011 1.0121 1.0904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94792 1.0199 NaN 1 0 Median 1.0783 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5786800 2925200 2861600 0 0 0 0 0 0 5107000 2595200 2511800 679880 330020 349850 0 0 0 0 0 0 11380 3434 11849 57828;57829 58066 58066 1 GIVGVENVAELK KPLTDQEKRRQISIRGIVGVENVAELKKSF SIRGIVGVENVAELKKSFNRHLHFTLVKDR R G I L K K 1 0 1 0 0 0 2 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 12 0 1226.6871 P06737;E9PK47 P06737 18 29 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.0016487 80.755 By MS/MS 1 1.0134 0.99038 NaN 1 Median 1.0134 0.99038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4656900 2609100 2047800 4656900 2609100 2047800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11381 1874 11850 57830 58067 58067 1 GIVGVENVAELKK KPLTDQEKRRQISIRGIVGVENVAELKKSF IRGIVGVENVAELKKSFNRHLHFTLVKDRN R G I K K S 1 0 1 0 0 0 2 2 0 1 1 2 0 0 0 0 0 0 0 3 0 0 13 1 1354.782 P06737;E9PK47 P06737 18 30 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 7.3494E-07 107.24 By MS/MS By MS/MS By MS/MS By matching 5 2 2 1 1.0784 1.1614 13.628 10 Median 1.0833 1.1284 15.188 5 0 Median 1.3584 1.3156 11.478 2 0 Median 0.9612 1.099 11.899 2 0 Median 1.0735 1.0487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96668000 43414000 53254000 66094000 29088000 37006000 21088000 9225900 11862000 8754400 4679900 4074500 731530 420130 311400 0 0 0 0 0 0 11382 1874 11851 57831;57832;57833;57834;57835;57836;57837;57838;57839;57840 58068;58069;58070;58071;58072;58073;58074;58075 58071 8 GIVHITSESLAK EIKKWFSDHRYRCQRGIVHITSESLAKDQL CQRGIVHITSESLAKDQLAIAASRHGRTYH R G I A K D 1 0 0 0 0 0 1 1 1 2 1 1 0 0 0 2 1 0 0 1 0 0 12 0 1253.698 Q9Y6X8 Q9Y6X8 497 508 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 3 0.027336 33.542 By MS/MS By MS/MS 1 1 2.5633 2.4477 72.622 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3879 1.4647 NaN 1 0 Median 4.7343 4.0905 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6672400 1368700 5303700 0 0 0 0 0 0 1759300 868720 890580 4913100 499950 4413100 0 0 0 0 0 0 11383 4500 11852 57841;57842 58076;58077 58077 2 GIVISFAR PVSSVGVVGLGTMGRGIVISFARARIPVIA GLGTMGRGIVISFARARIPVIAVDSDKNQL R G I A R A 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 1 0 0 8 0 861.50724 Q08426 Q08426 311 318 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.066188 31.289 By MS/MS By matching By matching 2 3 1 1.2967 1.1458 14.972 6 Median 1.1237 1.1221 1.228 2 0 Median 1.5423 1.3001 20.651 3 0 Median NaN NaN NaN 0 0 Median 1.3872 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5685300 2551100 3134200 2796100 1360600 1435500 2656500 1073700 1582800 0 0 0 232690 116810 115870 0 0 0 0 0 0 11384 2740 11853 57843;57844;57845;57846;57847;57848 58078 58078 1 GIVISFDAR FCRYLEKQFSDLKQKGIVISFDARAHPSSG SDLKQKGIVISFDARAHPSSGGSSRRFARL K G I A R A 1 1 0 1 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 1 0 0 9 0 976.53418 Q96G03;E7ENQ8 Q96G03 100 108 PGM2 Phosphoglucomutase-2 yes no 2 0.0061228 55.531 By MS/MS By MS/MS 1 1 1.1491 1.0594 12.862 2 Median 1.185 1.1603 NaN 1 0 Median 1.1143 0.96734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7510200 3873400 3636800 4209500 2235600 1973800 3300800 1637800 1663000 0 0 0 0 0 0 0 0 0 0 0 0 11385 3652 11854 57849;57850 58079;58080;58081 58080 3 GIVKDIIHDPGR RLRAVDFAERHGYIKGIVKDIIHDPGRGAP YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K G I G R G 0 1 0 2 0 0 0 2 1 3 0 1 0 0 1 0 0 0 0 1 0 0 12 1 1318.7357 P62917;E9PKU4;E9PKZ0;G3V1A1 P62917 43 54 RPL8 60S ribosomal protein L8 yes no 2;3 1.3489E-05 114.86 By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 3 1 2 4 0.94357 0.95197 11.521 14 Median 0.90903 0.93563 4.2434 4 2 Median 0.91671 0.84957 12.583 3 0 Median 0.94553 0.98173 NaN 1 0 Median 0.93102 0.85094 14.145 2 0 Median 0.96009 1.03 1.8791 4 1 Median NaN NaN NaN 0 0 Median 268520000 127740000 140780000 140830000 67024000 73804000 34140000 16532000 17608000 5901300 2888900 3012400 12377000 6235700 6140800 75272000 35058000 40215000 0 0 0 11386 2610 11855 57851;57852;57853;57854;57855;57856;57857;57858;57859;57860;57861;57862;57863;57864 58082;58083;58084;58085;58086;58087;58088;58089;58090;58091;58092;58093 58084 10 GIVLEKVGVEAK TALKANPFGGASHAKGIVLEKVGVEAKQPN HAKGIVLEKVGVEAKQPNSAIRKCVRVQLI K G I A K Q 1 0 0 0 0 0 2 2 0 1 1 2 0 0 0 0 0 0 0 3 0 0 12 1 1240.7391 P62266;D6RD47;D6RIX0;D6R9I7 P62266 49 60 RPS23 40S ribosomal protein S23 yes no 3 0.01009 27.681 By MS/MS 1 1.6201 1.432 NaN 1 Median NaN NaN NaN 0 0 Median 1.6201 1.432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792150 217490 574650 0 0 0 792150 217490 574650 0 0 0 0 0 0 0 0 0 0 0 0 11387 2577 11856 57865 58094 58094 1 GIVNAVKDPDANGK WKTVKQPVYVVDVSKGIVNAVKDPDANGKS KGIVNAVKDPDANGKSFAFVGPSRYLLFHL K G I G K S 2 0 2 2 0 0 0 2 0 1 0 2 0 0 1 0 0 0 0 2 0 0 14 1 1396.731 A0A3B3ISG8;Q16795;H3BRM9 A0A3B3ISG8 248 261 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2;3 0.0013537 44.318 By MS/MS 2 0.85906 0.83561 23.957 2 Median 0.85906 0.83561 23.957 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5204800 2585200 2619600 5204800 2585200 2619600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11388 424 11857 57866;57867 58095;58096;58097 58096 3 GIVNEQFLLQR QFATVVEAKLIKHKKGIVNEQFLLQRLADG KHKKGIVNEQFLLQRLADGAIDLYAMVVVL K G I Q R L 0 1 1 0 0 2 1 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1315.7248 P49748;J3QRJ8 P49748 557 567 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.00011384 143.01 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0746 1.0173 14.817 4 Median 0.88482 0.83639 NaN 1 0 Median 1.2598 1.089 NaN 1 0 Median 0.91668 0.95022 NaN 1 0 Median 1.3718 1.1679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43972000 21040000 22931000 20313000 10359000 9954700 17227000 7426900 9800300 6090000 3116200 2973800 341100 138630 202470 0 0 0 0 0 0 11389 2394 11858 57868;57869;57870;57871 58098;58099;58100;58101 58100 4 GIVNGAAPELPVPTGGPAVGAR ______________________________ PELPVPTGGPAVGAREQALAVSRNYLSQPR R G I A R E 4 1 1 0 0 0 1 5 0 1 1 0 0 0 4 0 1 0 0 3 0 0 22 0 1999.0851 P21281;H0YAT8;E5RGH6 P21281 8 29 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 2 0.040597 19.075 By MS/MS By matching 1 1 0.68909 0.64994 9.9971 2 Median 0.60699 0.60558 NaN 1 0 Median 0.7823 0.69755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3055700 1854700 1201000 2918300 1782400 1135900 137390 72275 65118 0 0 0 0 0 0 0 0 0 0 0 0 11390 2086 11859 57872;57873 58102 58102 1 GIVQNLHSMLPIQQLQEWGVER SSDLSLGHVTRALCRGIVQNLHSMLPIQQL SMLPIQQLQEWGVERVMGSGSALSRNDVLK R G I E R V 0 1 1 0 0 4 2 2 1 2 3 0 1 0 1 1 0 1 0 2 0 0 22 0 2574.3377 A0A0B4J2A0 A0A0B4J2A0 405 426 TRPV1 yes yes 3 0.00022354 27.495 By MS/MS 1 0.94977 0.82522 NaN 1 Median NaN NaN NaN 0 0 Median 0.94977 0.82522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1501800 735470 766290 0 0 0 1501800 735470 766290 0 0 0 0 0 0 0 0 0 0 0 0 11391 219 11860 57874 58103 58103 1 GIVVTAYSPLGSPDRPWAK PYLTQEKLIQYCQSKGIVVTAYSPLGSPDR TAYSPLGSPDRPWAKPEDPSLLEDPRIKAI K G I A K P 2 1 0 1 0 0 0 2 0 1 1 1 0 0 3 2 1 1 1 2 0 0 19 1 2013.0684 P15121;E9PCX2 P15121 204 222 AKR1B1 Aldose reductase yes no 3 5.278E-05 39.849 By MS/MS 1 0.56248 0.55969 NaN 1 Median 0.56248 0.55969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3639900 2186200 1453700 3639900 2186200 1453700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11392 2015 11861 57875 58104 58104 1 GIVVYTGDR NIAFFSTNCVEGTARGIVVYTGDRTVMGRI VEGTARGIVVYTGDRTVMGRIATLASGLEG R G I D R T 0 1 0 1 0 0 0 2 0 1 0 0 0 0 0 0 1 0 1 2 0 0 9 0 978.51345 P05023 P05023 256 264 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.00058288 112.17 By MS/MS By MS/MS 2 5 1.183 1.0265 33.32 7 Median 1.2057 1.1705 0.21209 2 0 Median 1.183 1.0223 37.192 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83784000 38085000 45699000 13819000 5877200 7941800 69965000 32208000 37757000 0 0 0 0 0 0 0 0 0 0 0 0 11393 1857 11862 57876;57877;57878;57879;57880;57881;57882 58105;58106;58107;58108;58109;58110;58111;58112;58113 58106 9 GIWHNDNK LLLASGMARDWPDARGIWHNDNKTFLVWVN RDWPDARGIWHNDNKTFLVWVNEEDHLRVI R G I N K T 0 0 2 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 8 0 982.46208 P12277;H0YJG0;P06732 P12277 216 223 CKB;CKM Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed yes no 2 0.0033025 99.375 By matching By MS/MS By matching 1 1 1 0.96977 1.0495 13.401 3 Median 0.85908 0.83226 NaN 1 0 Median 1.2265 1.0495 NaN 1 0 Median 0.96977 1.0499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6940200 3439000 3501200 1381700 749580 632150 5305400 2562200 2743100 253140 127200 125940 0 0 0 0 0 0 0 0 0 11394 1980 11863 57883;57884;57885 58114;58115 58115 2 GIWLEAGK PSDFGLFLSDDDPKKGIWLEAGKALDYYML SDDDPKKGIWLEAGKALDYYMLRNGDTMEY K G I G K A 1 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 1 0 0 0 0 8 0 872.4756 Q9Y490 Q9Y490 59 66 TLN1 Talin-1 yes yes 2 0.015483 50.127 By matching By MS/MS By matching By matching 1 2 1 1 1.2483 1.082 21.818 5 Median 1.2996 1.231 NaN 1 0 Median 1.1659 1.0132 9.2853 2 0 Median 0.72266 0.73064 NaN 1 0 Median 1.3803 1.2305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10146000 4669500 5476600 2390800 829930 1560900 4012900 1926000 2086900 1802800 1085800 716940 1939600 827700 1111900 0 0 0 0 0 0 11395 4441 11864 57886;57887;57888;57889;57890 58116;58117 58116 2 GIYALAAR TMGGDFSGKNQDCSKGIYALAARDVFLMLK KNQDCSKGIYALAARDVFLMLKKPNYKKLE K G I A R D 3 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 833.47594 O00139 O00139 337 344 KIF2A Kinesin-like protein KIF2A yes yes 2 0.012672 54.525 By matching By MS/MS 1 1 1.1705 1.1248 0.3666 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.052 1.1277 NaN 1 0 Median 1.3023 1.1219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5112100 2218400 2893700 0 0 0 0 0 0 3734000 1537100 2196900 1378100 681360 696790 0 0 0 0 0 0 11396 1440 11865 57891;57892 58118;58119 58119 2 GIYAYGFEKPSAIQQR VDSFDDMNLSESLLRGIYAYGFEKPSAIQQ IYAYGFEKPSAIQQRAILPCIKGYDVIAQA R G I Q R A 2 1 0 0 0 2 1 2 0 2 0 1 0 1 1 1 0 0 2 0 0 0 16 1 1826.9315 P38919;I3L3H2;J3QQP0;E9PBH4;F8WE11;P60842;J3KT12;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25;J3KT04;J3KS93;E7EMV8;Q14240;E7EQG2;J3KSN7 P60842 46 61 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2;3 1.5101E-71 240.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 9 5 3 9 6 1.0079 1.0232 24.051 45 Median 1.0145 1.04 16.211 13 1 Median 0.93825 0.87438 11.228 9 0 Median 1.0043 1.0881 8.5147 5 0 Median 1.0256 0.97059 6.5874 3 0 Plateau 1.1815 1.2741 9.1687 9 1 Median 0.98424 0.87258 40.592 6 0 Median 3003800000 1452500000 1551300000 1106400000 539820000 566550000 109330000 55566000 53761000 925730000 450380000 475360000 345120000 165500000 179620000 440930000 202630000 238300000 76331000 38573000 37758000 11397 2278;2529;2867 11866 57893;57894;57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915;57916;57917;57918;57919;57920;57921;57922;57923;57924;57925;57926;57927;57928;57929;57930;57931;57932;57933;57934;57935;57936;57937 58120;58121;58122;58123;58124;58125;58126;58127;58128;58129;58130;58131;58132;58133;58134;58135;58136;58137;58138;58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149;58150;58151;58152;58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166;58167;58168;58169;58170;58171;58172;58173;58174;58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185 58181 66 GIYFADMVSK IAPPEAPVTGYMFGKGIYFADMVSKSANYC YMFGKGIYFADMVSKSANYCHTSQGDPIGL K G I S K S 1 0 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 1 0 0 10 0 1129.5478 P09874 P09874 894 903 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0037749 59.153 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 9 5 2 2 1.307 1.1961 15.872 22 Median 1.0442 0.99105 10.023 2 0 Median 1.3471 1.186 3.3804 2 0 Median 1.193 1.2211 18.619 9 1 Median 1.3667 1.1848 16.019 5 0 Median 1.1174 1.1553 2.5653 2 0 Median 1.5619 1.316 12.162 2 0 Median 571600000 267710000 303890000 22849000 10907000 11942000 2296500 761720 1534800 401420000 193100000 208320000 123010000 52709000 70301000 19393000 9146300 10247000 2636400 1086000 1550500 11398 1922 11867;11868 57938;57939;57940;57941;57942;57943;57944;57945;57946;57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959 58186;58187;58188;58189;58190;58191;58192;58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205 58189 700 20 GIYKDDIAQVDYVEPSQNTISLK EVANLKPKSWVRLKRGIYKDDIAQVDYVEP QVDYVEPSQNTISLKMIPRIDYDRIKARMS R G I L K M 1 0 1 3 0 2 1 1 0 3 1 2 0 0 1 2 1 0 2 2 0 0 23 1 2595.3068 O00267 O00267 284 306 SUPT5H Transcription elongation factor SPT5 yes yes 3 8.8554E-18 76.21 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 0.9982 0.97781 37.453 6 Median 0.98686 1.0352 NaN 1 0 Median 1.074 1.0177 NaN 1 0 Median 0.66729 0.7814 NaN 1 0 Median 1.0136 0.97781 1.2289 2 0 Median 0.37231 0.39432 NaN 1 0 Median NaN NaN NaN 0 0 Median 52496000 24953000 27542000 8838200 4213900 4624300 454050 217270 236780 39001000 18153000 20849000 2003000 874270 1128700 2199300 1495300 704000 0 0 0 11399 1452 11869 57960;57961;57962;57963;57964;57965 58206;58207;58208;58209 58209 4 GIYLWDVEGR AHNYHPLPVALERGKGIYLWDVEGRKYFDF LERGKGIYLWDVEGRKYFDFLSSYSAVNQG K G I G R K 0 1 0 1 0 0 1 2 0 1 1 0 0 0 0 0 0 1 1 1 0 0 10 0 1206.6033 P04181 P04181 67 76 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.00036818 87.476 By MS/MS By MS/MS By MS/MS 3 3 2 1.2794 1.2609 15.704 8 Median 1.1425 1.1365 16.589 3 0 Median 1.3872 1.2082 18.118 3 0 Median 1.3109 1.3703 2.4532 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46059000 18937000 27122000 11726000 5070700 6655800 28465000 11596000 16869000 5867800 2270000 3597900 0 0 0 0 0 0 0 0 0 11400 1846 11870 57966;57967;57968;57969;57970;57971;57972;57973 58210;58211;58212;58213;58214;58215 58215 6 GIYLWDVEGRK AHNYHPLPVALERGKGIYLWDVEGRKYFDF ERGKGIYLWDVEGRKYFDFLSSYSAVNQGH K G I R K Y 0 1 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 1 1 1 0 0 11 1 1334.6983 P04181 P04181 67 77 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3 0.02129 23.226 By MS/MS 2 1.3091 1.368 42.987 2 Median 1.3091 1.368 42.987 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2457500 949690 1507800 2457500 949690 1507800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11401 1846 11871 57974;57975 58216 58216 1 GIYPSETFTR AEFFSFGINSILYQRGIYPSETFTRVQKYG ILYQRGIYPSETFTRVQKYGLTLLVTTDLE R G I T R V 0 1 0 0 0 0 1 1 0 1 0 0 0 1 1 1 2 0 1 0 0 0 10 0 1169.5717 Q13257 Q13257 36 45 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 2 0.00040021 97.431 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.0768 0.92946 24.852 6 Median 1.1037 1.0497 NaN 1 0 Median 1.0507 0.88847 NaN 1 0 Median 0.96149 0.92356 NaN 1 0 Median 1.1282 0.9354 NaN 1 0 Median 1.5227 1.5183 NaN 1 0 Median 0.88625 0.71758 NaN 1 0 Median 87237000 40060000 47177000 50647000 23229000 27418000 6830400 3075100 3755300 18400000 8945000 9455300 3455400 1521500 1933900 5345200 1940600 3404600 2558600 1348900 1209700 11402 2801 11872 57976;57977;57978;57979;57980;57981 58217;58218;58219;58220;58221;58222;58223;58224 58222 8 GIYQSLEGAVQAGQLK EMELPAKEADKNRSKGIYQSLEGAVQAGQL IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG K G I L K V 2 0 0 0 0 3 1 3 0 1 2 1 0 0 0 1 0 0 1 1 0 0 16 0 1660.8784 Q15149;H0YDN1;E9PMV1 Q15149 478 493 PLEC Plectin yes no 2;3 2.9842E-10 112.13 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 3 1 1.275 1.2302 13.706 12 Median 1.2011 1.2022 2.8292 2 0 Median 1.292 1.1391 8.2808 2 0 Median 1.2974 1.4116 15.442 3 0 Plateau 1.6565 1.527 NaN 1 0 Median 1.4198 1.5037 10.435 3 2 Median 1.4479 1.2339 NaN 1 0 Median 60341000 26154000 34187000 24147000 10872000 13276000 25296000 10548000 14749000 4660900 2234700 2426200 248940 101120 147820 5441200 2163300 3277900 546300 235520 310790 11403 2933 11873 57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993 58225;58226;58227;58228;58229;58230;58231;58232;58233 58233 9 GIYTGLSAGLLR SFHALTSILKAEGLRGIYTGLSAGLLRQAT GLRGIYTGLSAGLLRQATYTTTRLGIYTVL R G I L R Q 1 1 0 0 0 0 0 3 0 1 3 0 0 0 0 1 1 0 1 0 0 0 12 0 1219.6925 I3L1P8;Q02978 I3L1P8 68 79 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 1.4998E-05 122.28 By MS/MS By MS/MS By matching By matching By matching 3 4 1 1 1 1.6592 1.3991 25.482 9 Median 1.1134 1.0452 16.579 2 0 Median 1.7011 1.4848 9.0656 4 0 Median 1.2703 1.1906 NaN 1 0 Median 2.2862 1.9241 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0009 0.9229 NaN 1 0 Median 80012000 25998000 54014000 50386000 15176000 35210000 27814000 10016000 17797000 1501100 639400 861670 102010 38701 63312 0 0 0 209090 127850 81242 11404 1277 11874 57994;57995;57996;57997;57998;57999;58000;58001;58002;58003 58234;58235;58236;58237 58234 4 GKATISNDGATILK TLGPRGMDKLIVDGRGKATISNDGATILKL RGKATISNDGATILKLLDVVHPAAKTLVDI R G K L K L 2 0 1 1 0 0 0 2 0 2 1 2 0 0 0 1 2 0 0 0 0 0 14 1 1387.7671 Q99832;F8WAM2 Q99832 54 67 CCT7 T-complex protein 1 subunit eta yes no 2 4.6511E-05 90.614 By MS/MS By matching 1 1 1.2734 1.1955 19.942 2 Median 1.1074 1.0383 NaN 1 0 Median 1.4642 1.3766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14459000 8050300 6408800 13204000 7564700 5639300 1255100 485660 769460 0 0 0 0 0 0 0 0 0 0 0 0 11405 3771 11875 58004;58005 58238 58238 1 GKAVVLMGK NVGSKQMQQIRMSLRGKAVVLMGKNTMMRK IRMSLRGKAVVLMGKNTMMRKAIRGHLENN R G K G K N 1 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 2 0 0 9 1 901.54191 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;F8VWV4;F8VS58;F8VZS0 P05388 49 57 RPLP0 60S acidic ribosomal protein P0 yes no 2 0.031091 54.157 By MS/MS 1 0.9176 0.89468 NaN 1 Median 0.9176 0.89468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3418700 1778700 1640000 3418700 1778700 1640000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11406 1865 11876 58006 58239;58240 58239 2 GKDAFPVAGQK EETVKALKEKIESEKGKDAFPVAGQKLIYA ESEKGKDAFPVAGQKLIYAGKILNDDTALK K G K Q K L 2 0 0 1 0 1 0 2 0 0 0 2 0 1 1 0 0 0 0 1 0 0 11 1 1116.5928 P54727;Q5W0S5;Q5W0S4 P54727 35 45 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.0032263 64.711 By MS/MS 1 1.0378 0.97485 NaN 1 Median NaN NaN NaN 0 0 Median 1.0378 0.97485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3873900 1690700 2183200 0 0 0 3873900 1690700 2183200 0 0 0 0 0 0 0 0 0 0 0 0 11407 2486 11877 58007 58241;58242 58241 2 GKDEAMAIGGHWSPSLDGPDPEKDPSVLIK FQHPARLVKFLVGMKGKDEAMAIGGHWSPS LDGPDPEKDPSVLIKTAIRCCKALTGIDLS K G K I K T 2 0 0 4 0 0 2 4 1 2 2 3 1 0 4 3 0 1 0 1 0 0 30 2 3145.539 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 493 522 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 4 3.0172E-09 44.721 By MS/MS 1 0.40008 0.48075 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40008 0.48075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9982800 6301900 3680800 0 0 0 0 0 0 9982800 6301900 3680800 0 0 0 0 0 0 0 0 0 11408 3331 11878 58008 58243 58243 1 GKDHVVSDFSEHGSLK PVGLEGLLTTKWLLRGKDHVVSDFSEHGSL KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ R G K L K Y 0 0 0 2 0 0 1 2 2 0 1 2 0 1 0 3 0 0 0 2 0 0 16 1 1740.8431 P54886 P54886 766 781 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3;4 3.605E-10 118.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 5 4 1.3233 1.3587 21.437 18 Median 1.2538 1.2886 27.11 2 0 Median 1.343 1.3011 29.758 3 0 Plateau 1.3089 1.431 3.8022 4 0 Linear 1.3444 1.3133 6.6065 5 0 Median NaN NaN NaN 0 0 Median 1.9155 1.696 23.743 4 1 Median 204090000 86096000 118000000 22529000 8472100 14057000 29845000 12525000 17321000 97200000 42043000 55157000 44694000 19616000 25079000 0 0 0 9822500 3440200 6382400 11409 2488 11879 58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026 58244;58245;58246;58247;58248;58249;58250;58251;58252;58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267;58268;58269;58270;58271;58272;58273;58274;58275 58259 32 GKDISTILDEERK GVGRGKDISTITGHRGKDISTILDEERKEN HRGKDISTILDEERKENKRPQRAAAARRKK R G K R K E 0 1 0 2 0 0 2 1 0 2 1 2 0 0 0 1 1 0 0 0 0 0 13 2 1502.794 Q96T23;H0YDG9 Q96T23 1060 1072 RSF1 Remodeling and spacing factor 1 yes no 3 0.047926 31.914 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11410 3740 11880 58027 58276 58276 1 GKDISTITGHR IEDDIKEADGGGVGRGKDISTITGHRGKDI GVGRGKDISTITGHRGKDISTILDEERKEN R G K H R G 0 1 0 1 0 0 0 2 1 2 0 1 0 0 0 1 2 0 0 0 0 0 11 1 1183.6309 Q96T23;H0YDG9 Q96T23 1049 1059 RSF1 Remodeling and spacing factor 1 yes no 2;3 0.0045725 61.65 By MS/MS 2 0.97813 1.1083 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97813 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median 3124800 547360 2577500 0 0 0 0 0 0 0 0 0 0 0 0 3124800 547360 2577500 0 0 0 11411 3740 11881 58028;58029 58277;58278;58279 58278 3 GKDKEYAEIIR NVDASVMFRKWRDSKGKDKEYAEIIRKQVS RDSKGKDKEYAEIIRKQVSATKAEAEKDGV K G K I R K 1 1 0 1 0 0 2 1 0 2 0 2 0 0 0 0 0 0 1 0 0 0 11 2 1320.7038 Q712K3 Q712K3 156 166 UBE2R2 Ubiquitin-conjugating enzyme E2 R2 yes yes 3 0.0054561 36.284 By MS/MS 1 1.2041 1.044 NaN 1 Median NaN NaN NaN 0 0 Median 1.2041 1.044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1139500 462090 677390 0 0 0 1139500 462090 677390 0 0 0 0 0 0 0 0 0 0 0 0 11412 3210 11882 58030 58280 58280 1 GKDLIGVQNLLK TWIREKEPIAASTNRGKDLIGVQNLLKKHQ TNRGKDLIGVQNLLKKHQALQAEIAGHEPR R G K L K K 0 0 1 1 0 1 0 2 0 1 3 2 0 0 0 0 0 0 0 1 0 0 12 1 1296.7765 A0A0D9SF54;Q13813 Q13813 813 824 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.7122E-06 137.46 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 2 3 4 2 3 1.0998 1.142 24.257 18 Median 1.4541 1.5211 2.8899 4 0 Median 1.2297 1.1868 9.4153 2 0 Median 0.98844 1.1516 41.136 3 0 Plateau 1.0728 1.0484 9.723 4 0 Median 0.99524 1.0727 14.614 2 0 Median 1.0938 0.97607 17.549 3 0 Median 184560000 90365000 94190000 33110000 13658000 19453000 8647300 3848000 4799200 113110000 57868000 55240000 7246900 3487100 3759800 19084000 9876000 9207900 3359600 1628900 1730700 11413 264;2838 11883 58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046;58047;58048 58281;58282;58283;58284;58285;58286;58287;58288;58289;58290;58291 58287 10 GKDLIGVQNLLKK TWIREKEPIAASTNRGKDLIGVQNLLKKHQ NRGKDLIGVQNLLKKHQALQAEIAGHEPRI R G K K K H 0 0 1 1 0 1 0 2 0 1 3 3 0 0 0 0 0 0 0 1 0 0 13 2 1424.8715 A0A0D9SF54;Q13813 Q13813 813 825 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 4.9199E-05 83.204 By MS/MS 2 0.79691 0.94028 48.617 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79691 0.94028 48.617 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24731000 12225000 12505000 0 0 0 0 0 0 24731000 12225000 12505000 0 0 0 0 0 0 0 0 0 11414 264;2838 11884 58049;58050 58292;58293 58292 2 GKDMVVDIQR ELDLAVPFCVNFRLKGKDMVVDIQRRHLRV NFRLKGKDMVVDIQRRHLRVGLKGQPAIID K G K Q R R 0 1 0 2 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 2 0 0 10 1 1159.6019 Q9Y266 Q9Y266 195 204 NUDC Nuclear migration protein nudC yes yes 2 0.0022947 103.7 By MS/MS By MS/MS 1 2 1.4165 1.3307 5.3492 3 Median 1.1763 1.2603 NaN 1 0 Median 1.4543 1.3662 3.7223 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18574000 8113600 10460000 9337500 4163000 5174500 9236500 3950600 5286000 0 0 0 0 0 0 0 0 0 0 0 0 11415 4376 11885 58051;58052;58053 58294;58295;58296;58297 58294 4 GKDQVVILHHMLSK VAERQRSLFVVVGDRGKDQVVILHHMLSKA RGKDQVVILHHMLSKATVKARPSVLWCYKK R G K S K A 0 0 0 1 0 1 0 1 2 1 2 2 1 0 0 1 0 0 0 2 0 0 14 1 1603.8868 Q9H0A0;E9PMU0;E9PJN6 Q9H0A0 33 46 NAT10 N-acetyltransferase 10 yes no 3;4 0.00019214 66.059 By matching By MS/MS By MS/MS By matching 1 4 2 2 1.117 1.2518 23.098 9 Median 1.1871 1.2571 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0987 1.2638 3.5693 4 0 Median 1.3293 1.2663 19.126 2 0 Median 0.77106 0.86354 40.748 2 0 Median NaN NaN NaN 0 0 Median 50662000 23154000 27509000 1420100 727730 692360 0 0 0 35067000 15738000 19329000 8237000 3101200 5135800 5937900 3586100 2351800 0 0 0 11416 3921 11886 58054;58055;58056;58057;58058;58059;58060;58061;58062 58298;58299;58300;58301;58302;58303;58304;58305;58306;58307;58308 58304 11 GKDYYQTLGLAR ______________________________ ______________________________ M G K A R G 1 1 0 1 0 1 0 2 0 0 2 1 0 0 0 0 1 0 2 0 0 0 12 1 1383.7147 P25685 P25685 2 13 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2;3 1.6056E-05 147.95 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 3 3 1 1.1173 1.0812 35.084 10 Median 1.2238 1.3116 11.287 3 0 Median 0.42351 0.44823 NaN 1 0 Median 0.96368 1.0981 23.828 3 0 Median 1.1409 0.99247 2.4964 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101730000 47859000 53870000 47130000 21619000 25511000 1130400 617320 513110 38223000 18626000 19597000 15246000 6996200 8249500 0 0 0 0 0 0 11417 2134 11887 58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073 58309;58310;58311;58312;58313;58314;58315;58316;58317 58311 9 GKEAVVQEPER QSEAQINTAKRLLEKGKEAVVQEPERSWFQ LLEKGKEAVVQEPERSWFQTKEERKKEKIA K G K E R S 1 1 0 0 0 1 3 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 11 1 1240.6412 B7Z6D5;Q96GQ7 B7Z6D5 609 619 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.00022231 64.439 By matching By MS/MS By matching 1 2 1 0.99954 0.96938 7.7706 4 Median NaN NaN NaN 0 0 Median 1.0813 0.98916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90829 1.0167 9.601 2 0 Median 1.0207 0.90633 NaN 1 0 Median 1973400 937520 1035900 0 0 0 371880 166160 205730 0 0 0 0 0 0 1441900 701430 740480 159660 69929 89729 11418 635 11888 58074;58075;58076;58077 58318 58318 1 GKEDALVTK VMVEPHRHEGVFICRGKEDALVTKNLVPGE GVFICRGKEDALVTKNLVPGESVYGEKRVS R G K T K N 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 9 1 959.52876 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 101 109 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.0029802 108.43 By matching By matching By MS/MS By MS/MS 2 2 2 2 1.2457 1.1577 10.408 8 Median 1.2672 1.2076 8.828 2 0 Median 1.4245 1.289 2.4928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0317 1.0817 12.449 2 0 Median 1.24 1.0676 5.3974 2 0 Median 12583000 6500400 6082700 173000 68302 104700 854900 336640 518260 0 0 0 0 0 0 10781000 5743600 5037000 774500 351790 422700 11419 2097 11889 58078;58079;58080;58081;58082;58083;58084;58085 58319;58320;58321 58320 3 GKEDEGEEAASPMLQIQR IPLDEGEDEAQRRRKGKEDEGEEAASPMLQ DEGEEAASPMLQIQRDAATIMQPYFTSNGL K G K Q R D 2 1 0 1 0 2 4 2 0 1 1 1 1 0 1 1 0 0 0 0 0 0 18 1 1986.9317 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2400 2417 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 3.5314E-146 299.25 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.86621 0.85938 13.197 8 Median 0.81407 0.84889 18.985 3 0 Median 0.94564 0.87744 12.205 3 1 Median 0.74099 0.86022 NaN 1 0 Median 0.9217 0.85853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149330000 77159000 72166000 69356000 35626000 33730000 57033000 30618000 26415000 20565000 9890100 10675000 2370900 1024400 1346600 0 0 0 0 0 0 11420 2865 11890;11891 58086;58087;58088;58089;58090;58091;58092;58093 58322;58323;58324;58325;58326;58327;58328;58329;58330;58331;58332;58333 58324 1552 12 GKEGSALTEGAKEEGGEEVAK DSGDAAAQPAFTGIKGKEGSALTEGAKEEG LTEGAKEEGGEEVAKAVLEQEETAAASRER K G K A K A 3 0 0 0 0 0 6 5 0 0 1 3 0 0 0 1 1 0 0 1 0 0 21 2 2075.0019 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 722 742 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3;4 0.026892 14.326 By MS/MS By MS/MS 2 1 1.0137 1.0626 8.931 3 Median 0.98337 1.0308 4.2922 2 0 Median 1.2553 1.1922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9919600 4839100 5080500 7705700 3741600 3964100 2213900 1097500 1116400 0 0 0 0 0 0 0 0 0 0 0 0 11421 156 11892 58094;58095;58096 58334;58335;58336 58335 3 GKEHDDIFDK ETLQEEFSRFMTEPKGKEHDDIFDKLKEAV MTEPKGKEHDDIFDKLKEAVKEESIKRHKW K G K D K L 0 0 0 3 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 0 0 0 10 1 1202.5568 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1 A0A2R8Y3X5 584 593 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.0701 13.809 By MS/MS 1 1.7921 1.7289 NaN 1 Median NaN NaN NaN 0 0 Median 1.7921 1.7289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 597990 221620 376370 0 0 0 597990 221620 376370 0 0 0 0 0 0 0 0 0 0 0 0 11422 357 11893 58097 58337 58337 1 GKELNEFREK IQKIIETLTQQLQAKGKELNEFREKHNIRL QLQAKGKELNEFREKHNIRLMGEDEKPAAK K G K E K H 0 1 1 0 0 0 3 1 0 0 1 2 0 1 0 0 0 0 0 0 0 0 10 2 1248.6463 Q9UHV9 Q9UHV9 112 121 PFDN2 Prefoldin subunit 2 yes yes 3 0.0302 23.851 By matching By MS/MS 1 1 1.2018 1.2463 16.262 2 Median 1.3301 1.3982 NaN 1 0 Median 1.0858 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1997400 874920 1122500 1517500 604590 912950 479870 270330 209540 0 0 0 0 0 0 0 0 0 0 0 0 11423 4284 11894 58098;58099 58338 58338 1 GKENKPSYIHYQPAQDR WYLRLYVHTLTITSKGKENKPSYIHYQPAQ ENKPSYIHYQPAQDRLQPHLLEMLIQLPAN K G K D R L 1 1 1 1 0 2 1 1 1 1 0 2 0 0 2 1 0 0 2 0 0 0 17 2 2029.997 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPK4;A0A1W2PPQ7 Q969N2 406 422 PIGT GPI transamidase component PIG-T yes no 4 0.0014395 30.974 By MS/MS By MS/MS 1 1 0.97147 0.98584 19.277 2 Median 0.79462 0.86022 NaN 1 0 Median 1.1877 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7325800 3656300 3669500 3221100 1718800 1502300 4104600 1937500 2167200 0 0 0 0 0 0 0 0 0 0 0 0 11424 331 11895 58100;58101 58339;58340;58341 58340 3 GKESEKELALVK SWQTEEKTCDLVGEKGKESEKELALVKRLK GEKGKESEKELALVKRLKPLFNKSFESTVG K G K V K R 1 0 0 0 0 0 3 1 0 0 2 3 0 0 0 1 0 0 0 1 0 0 12 2 1329.7504 P20645;F5GX30;F5GXE0;F5GXU0;F5H883 P20645 39 50 M6PR Cation-dependent mannose-6-phosphate receptor yes no 3 0.0087707 29.807 By MS/MS By matching 2 1 0.93688 0.92783 18.036 3 Median 1.0628 1.0614 23.02 2 0 Median 0.93688 0.92783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3374400 1366500 2008000 3117300 1231200 1886100 257140 135300 121840 0 0 0 0 0 0 0 0 0 0 0 0 11425 2082 11896 58102;58103;58104 58342;58343 58343 2 GKEVDNFVDKLK ARPSGPSKALKLGAKGKEVDNFVDKLKSEG GAKGKEVDNFVDKLKSEGETIMSSSMGKRT K G K L K S 0 0 1 2 0 0 1 1 0 0 1 3 0 1 0 0 0 0 0 2 0 0 12 2 1390.7456 B0YIW6;P48444 B0YIW6 273 284 ARCN1 Coatomer subunit delta yes no 3 1.8337E-06 98.368 By MS/MS 1 0.93253 0.9516 NaN 1 Median 0.93253 0.9516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12785000 6139500 6645200 12785000 6139500 6645200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11426 561 11897 58105 58344;58345 58344 2 GKFEDMAK KKCSERWKTMSAKEKGKFEDMAKADKARYE TMSAKEKGKFEDMAKADKARYEREMKTYIP K G K A K A 1 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 8 1 924.4375 P09429;Q5T7C4;B2RPK0;P23497 P09429 58 65 HMGB1;HMGB1P1;SP100 High mobility group protein B1;Putative high mobility group protein B1-like 1;Nuclear autoantigen Sp-100 no no 2 0.016667 91.069 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 3 1 2 1.0725 1.0276 10.875 10 Median 1.0584 1.0531 4.5204 2 0 Median 1.2049 1.1023 NaN 1 0 Median 1.0724 1.0625 NaN 1 0 Median 1.2266 1.0352 4.687 3 0 Median 0.7884 0.83616 NaN 1 0 Median 1.0237 0.87589 8.6203 2 0 Median 140270000 66917000 73348000 14497000 6621700 7875200 3058800 1423800 1635000 83998000 40422000 43576000 33508000 15676000 17832000 2370200 1460700 909590 2833400 1313400 1520000 11427 1915;2114 11898 58106;58107;58108;58109;58110;58111;58112;58113;58114;58115 58346;58347;58348;58349;58350;58351;58352;58353 58350 8 GKFGHEFLEFEFRPDGK AVASDFYLRYYVGHKGKFGHEFLEFEFRPD FGHEFLEFEFRPDGKLRYANNSNYKNDVMI K G K G K L 0 1 0 1 0 0 3 3 1 0 1 2 0 4 1 0 0 0 0 0 0 0 17 2 2038.9901 P61326;Q96A72;F5H6N1 Q96A72 17 33 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 4 0.00063963 36.112 By MS/MS By matching 1 1 0.80405 0.77914 8.3223 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63768 0.73461 NaN 1 0 Median 1.0138 0.82636 NaN 1 0 Median 18937000 11045000 7892100 0 0 0 0 0 0 0 0 0 0 0 0 18753000 10974000 7778900 183950 70752 113200 11428 2556;3596 11899 58116;58117 58354;58355 58355 2 GKFNTSDVSAIEK GLLFEGRITPELLTRGKFNTSDVSAIEKNK TRGKFNTSDVSAIEKNKEGLHNAKEILTRL R G K E K N 1 0 1 1 0 0 1 1 0 1 0 2 0 1 0 2 1 0 0 1 0 0 13 1 1394.7042 P19367 P19367 332 344 HK1 Hexokinase-1 yes yes 2;3 6.8297E-06 111.63 By MS/MS By MS/MS 2 2 1.2759 1.2815 22.807 4 Median 1.0244 1.0685 9.6853 2 2 Median 1.5969 1.5447 10.389 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52902000 26472000 26430000 47835000 24393000 23441000 5067600 2078700 2988900 0 0 0 0 0 0 0 0 0 0 0 0 11429 2064 11900 58118;58119;58120;58121 58356;58357;58358;58359 58356 4 GKFSEGEATLR RPMEESLLLFEAMRKGKFSEGEATLRMKLV AMRKGKFSEGEATLRMKLVMEDGKMDPVAY K G K L R M 1 1 0 0 0 0 2 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 1 1193.6041 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQQ5;A0A1B0GTT3 P47897 393 403 QARS Glutamine--tRNA ligase yes no 2 0.001389 72.643 By MS/MS By MS/MS By matching 1 1 1 1.1564 1.1571 16.385 3 Median 1.2729 1.3024 NaN 1 0 Median 1.1564 1.1571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89493 0.94217 NaN 1 0 Median NaN NaN NaN 0 0 Median 7247300 3528300 3719000 2340500 984940 1355500 1836900 761510 1075400 0 0 0 0 0 0 3069900 1781800 1288100 0 0 0 11430 2356 11901 58122;58123;58124 58360;58361 58361 2 GKGAAAAAAASGAAGGGGGGAGAGAPGGGR ______________________________ GGGGGAGAGAPGGGRLLLSTSLDAKDELEE K G K G R L 12 1 0 0 0 0 0 14 0 0 0 1 0 0 1 1 0 0 0 0 0 0 30 1 2137.0373 Q68E01 Q68E01 6 35 INTS3 Integrator complex subunit 3 yes yes 3 3.5837E-05 29.154 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 0.82192 0.8586 20.832 6 Median 0.6152 0.6363 NaN 1 0 Median 0.89893 0.85153 NaN 1 0 Median 0.77385 0.88178 2.5991 2 0 Median 1.2429 1.1945 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85516 0.7551 NaN 1 0 Median 8003100 4351100 3651900 1141100 630630 510430 2164700 1259200 905570 3634600 1958200 1676400 738690 311670 427020 0 0 0 323990 191450 132540 11431 3126 11902 58125;58126;58127;58128;58129;58130 58362;58363;58364;58365;58366;58367;58368 58366 7 GKGASGSFVVVQK ALKRELNRGVIKQVKGKGASGSFVVVQKSR VKGKGASGSFVVVQKSRKTPQKSRNRKNRS K G K Q K S 1 0 0 0 0 1 0 3 0 0 0 2 0 1 0 2 0 0 0 3 0 0 13 1 1262.6983 Q5SSJ5;X6RGJ2;Q5SWC8 Q5SSJ5 221 233 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2;3 0.00025993 72.887 By MS/MS By MS/MS By MS/MS 2 3 5 1.1424 1.1561 32.951 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81655 0.93038 13.792 2 0 Median NaN NaN NaN 0 0 Median 0.80143 0.89718 25.322 3 0 Median 1.6804 1.4534 9.8673 5 2 Median 37843000 19967000 17876000 0 0 0 0 0 0 4487300 2592900 1894400 0 0 0 24051000 14129000 9922000 9304700 3245200 6059500 11432 3075 11903 58131;58132;58133;58134;58135;58136;58137;58138;58139;58140 58369;58370;58371;58372;58373;58374;58375;58376;58377;58378 58373 10 GKGEGDLSQLSK TTAARPTFEPARGGRGKGEGDLSQLSKQYS GGRGKGEGDLSQLSKQYSSRDLPSHTKIKY R G K S K Q 0 0 0 1 0 1 1 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1217.6252 Q9P013 Q9P013 17 28 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2;3 0.024735 41.54 By MS/MS 2 1.3633 1.1971 13.061 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3633 1.1971 13.061 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3628600 1616000 2012600 0 0 0 0 0 0 0 0 0 3628600 1616000 2012600 0 0 0 0 0 0 11433 4196 11904 58141;58142 58379;58380 58379 2 GKGEKEPPSPGMER KTKKQKRLLRLQQERGKGEKEPPSPGMERK RGKGEKEPPSPGMERKRSRRRGVGADPEAR R G K E R K 0 1 0 0 0 0 3 3 0 0 0 2 1 0 3 1 0 0 0 0 0 0 14 2 1497.7246 P56182 P56182 375 388 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 3 0.01921 23.481 By MS/MS By matching 1 1 0.75187 0.77613 5.0642 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65461 0.74883 NaN 1 0 Median 0.86358 0.80443 NaN 1 0 Median 1223800 726220 497580 0 0 0 0 0 0 0 0 0 0 0 0 1045200 640030 405190 178580 86192 92387 11434 2507 11905 58143;58144 58381 58381 1 GKGFGFIK LFAKYGEPGEVFINKGKGFGFIKLESRALA GEVFINKGKGFGFIKLESRALAEIAKAELD K G K I K L 0 0 0 0 0 0 0 3 0 1 0 2 0 2 0 0 0 0 0 0 0 0 8 1 852.48577 P23246 P23246 331 338 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.035269 66.993 By MS/MS By MS/MS 1 1 1.1615 1.3137 3.4186 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1222 1.2823 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2023 1.3458 NaN 1 0 Median NaN NaN NaN 0 0 Median 19908000 9531000 10377000 0 0 0 0 0 0 6045400 3189900 2855500 0 0 0 13862000 6341100 7521200 0 0 0 11435 2107 11906 58145;58146 58382;58383 58382 2 GKGGEIQPVSVK KVLQATVVAVGSGSKGKGGEIQPVSVKVGD GSKGKGGEIQPVSVKVGDKVLLPEYGGTKV K G K V K V 0 0 0 0 0 1 1 3 0 1 0 2 0 0 1 1 0 0 0 2 0 0 12 1 1197.6717 P61604;B8ZZL8 P61604 55 66 HSPE1 10 kDa heat shock protein, mitochondrial yes no 2;3 0.0055648 43.308 By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 1.1985 1.0372 22.65 9 Median 1.0836 1.0148 14.248 2 0 Median 1.2927 1.0372 18.674 3 0 Median 1.0689 0.92777 33.963 2 0 Median 1.519 1.274 31.229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53682000 24300000 29382000 21516000 10428000 11088000 30654000 13221000 17433000 664940 310650 354290 846660 340400 506260 0 0 0 0 0 0 11436 2560 11907 58147;58148;58149;58150;58151;58152;58153;58154;58155 58384;58385;58386;58387;58388;58389 58384 6 GKGGVTGSPEASISGSKGDLK KSKIKMPKFNFSKPKGKGGVTGSPEASISG GSPEASISGSKGDLKSSKASLGSLEGEAEA K G K L K S 1 0 0 1 0 0 1 6 0 1 1 3 0 0 1 4 1 0 0 1 0 0 21 2 1930.996 Q09666 Q09666 5724 5744 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.070037 7.8038 By MS/MS 1 0.98184 1.219 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98184 1.219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1221500 716240 505230 0 0 0 0 0 0 1221500 716240 505230 0 0 0 0 0 0 0 0 0 11437 2749 11908 58156 58390 58390 1 GKGLAAFLK DSVLKPLWKGIRQHRGKGLAAFLKAIGYLI GIRQHRGKGLAAFLKAIGYLIPLMDAEYAN R G K L K A 2 0 0 0 0 0 0 2 0 0 2 2 0 1 0 0 0 0 0 0 0 0 9 1 903.55419 O75533 O75533 740 748 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0060845 83.206 By matching By MS/MS By MS/MS By matching 1 1 2 2 1.1236 1.1223 13.474 6 Median 0.94372 0.99845 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1938 1.3811 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1101 1.2231 2.1739 2 0 Median 1.1365 1.0198 3.5683 2 0 Median 46336000 21643000 24693000 1896300 1018300 878010 0 0 0 11369000 4751600 6617200 0 0 0 30287000 14525000 15762000 2783400 1347300 1436100 11438 1683 11909 58157;58158;58159;58160;58161;58162 58391;58392;58393;58394;58395;58396 58393 6 GKGSLGSQGAKDEPEEELQK KAKRDKASGDVKEKKGKGSLGSQGAKDEPE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K G K Q K G 1 0 0 1 0 2 4 4 0 0 2 3 0 0 1 2 0 0 0 0 0 0 20 2 2086.0178 E7ETY2;A0A3B3IS06;Q13428 Q13428 1404 1423 TCOF1 Treacle protein no no 3;4 1.8113E-07 56.719 By matching By MS/MS By matching 1 2 1 0.75247 0.8718 32.321 4 Median 0.52032 0.56968 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75247 0.8718 6.4507 2 0 Median 1.2323 1.249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23310000 13387000 9923300 820510 440560 379950 0 0 0 21494000 12423000 9070200 996020 522850 473170 0 0 0 0 0 0 11439 2816;891 11910 58163;58164;58165;58166 58397;58398;58399;58400;58401;58402 58398 6 GKGYYDAYLKR MPGLGFDKHGNRLGRGKGYYDAYLKRCLQH RLGRGKGYYDAYLKRCLQHQEVKPYTLALA R G K K R C 1 1 0 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 3 0 0 0 11 2 1332.6826 A0A0A6YYL1;A0A0U1RQM3;P49914 A0A0A6YYL1 125 135 ST20-MTHFS;MTHFS 5-formyltetrahydrofolate cyclo-ligase yes no 3 0.0044115 37.426 By MS/MS By MS/MS 1 1 0.79488 0.78317 20.199 2 Median NaN NaN NaN 0 0 Median 1.042 0.90342 NaN 1 0 Median 0.60639 0.67894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4518900 2387500 2131400 0 0 0 2351800 1127500 1224300 2167000 1259900 907110 0 0 0 0 0 0 0 0 0 11440 207 11911 58167;58168 58403;58404 58404 2 GKIEEVHLPVEK IIRLNKLEDTITLIKGKIEEVHLPVEKVDV LIKGKIEEVHLPVEKVDVIISEWMGYFLLF K G K E K V 0 0 0 0 0 0 3 1 1 1 1 2 0 0 1 0 0 0 0 2 0 0 12 1 1376.7664 O60678 O60678 311 322 PRMT3 Protein arginine N-methyltransferase 3 yes yes 3 0.0096008 28.361 By MS/MS 1 0.94647 0.87393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94647 0.87393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1270400 581340 689020 0 0 0 0 0 0 0 0 0 1270400 581340 689020 0 0 0 0 0 0 11441 1625 11912 58169 58405;58406 58406 2 GKIELEETIK AHVTDPRVVDLLVIKGKIELEETIKVWKQR LLVIKGKIELEETIKVWKQRTHVMRFFHET K G K I K V 0 0 0 0 0 0 3 1 0 2 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1158.6496 P56556;A0A2Y9D025;R4GN43 P56556 86 95 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes no 2 0.0022782 110.53 By MS/MS By MS/MS By MS/MS 1 1 1 1.177 1.1043 35.015 2 Median NaN NaN NaN 0 0 Median 1.6317 1.4146 NaN 1 0 Median 0.84905 0.86211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27653000 8774100 18879000 0 0 0 14714000 4833600 9880000 6900700 3940500 2960100 0 0 0 0 0 0 6039100 0 6039100 11442 408 11913 58170;58171;58172 58407;58408;58409;58410 58410 4 GKIIKPLQYQSTVASGTVAR RRLNMYRQKERRNSRGKIIKPLQYQSTVAS PLQYQSTVASGTVARVEPNIKWFGNTRVIK R G K A R V 2 1 0 0 0 2 0 2 0 2 1 2 0 0 1 2 2 0 1 2 0 0 20 2 2116.2004 Q13823 Q13823 54 73 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 0.00062886 28.202 By MS/MS 1 0.74785 0.88129 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74785 0.88129 NaN 1 0 Median NaN NaN NaN 0 0 Median 5328300 2918800 2409500 0 0 0 0 0 0 0 0 0 0 0 0 5328300 2918800 2409500 0 0 0 11443 2839 11914 58173 58411 58411 1 GKITDLANLSAANHDAAIFPGGFGAAK GESRNVLTESARIARGKITDLANLSAANHD NHDAAIFPGGFGAAKNLSTFAVDGKDCKVN R G K A K N 7 0 2 2 0 0 0 4 1 2 2 2 0 2 1 1 1 0 0 0 0 0 27 1 2626.3503 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3;A0A096LP73;A0A2R8YDR7;F2Z2Q0;A0A096LP12;A0A096LNJ1;A0A2R8Y6K9 A0A096LPI6 126 152 C21orf33 yes no 3 4.7125E-05 29.269 By MS/MS 1 0.68156 0.69304 NaN 1 Median 0.68156 0.69304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9605900 6029400 3576500 9605900 6029400 3576500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11444 144 11915 58174 58412;58413 58412 2 GKKPDIDITGPK NFSGSKVQTPEVDVKGKKPDIDITGPKVDI DVKGKKPDIDITGPKVDINAPDVEVQGKVK K G K P K V 0 0 0 2 0 0 0 2 0 2 0 3 0 0 2 0 1 0 0 0 0 0 12 2 1267.7136 Q09666 Q09666 3373 3384 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.0783E-06 131.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 5 1 0.82995 0.92517 20.562 11 Median 0.70784 0.80496 11.946 2 0 Median 0.81479 0.84876 NaN 1 0 Median 0.93837 1.165 18.386 2 0 Median 0.84431 0.94133 22.758 5 0 Median NaN NaN NaN 0 0 Median 0.8971 0.92517 NaN 1 0 Median 43275000 22795000 20480000 6231300 3451500 2779800 6801800 3636900 3165000 9501900 5089700 4412300 19909000 10161000 9748100 0 0 0 831090 456320 374760 11445 2749 11916 58175;58176;58177;58178;58179;58180;58181;58182;58183;58184;58185 58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432;58433;58434 58427 21 GKLDDYQER LGVIDKKLRNLEKKKGKLDDYQERMNKGER NLEKKKGKLDDYQERMNKGERLNQDQLDAV K G K E R M 0 1 0 2 0 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 1 1122.5306 Q14444;E9PLA9 Q14444 73 81 CAPRIN1 Caprin-1 yes no 2 0.043302 49.418 By matching By MS/MS By matching By matching 1 1 1 1 1.1473 1.1664 5.8422 4 Median 1.1123 1.1304 NaN 1 0 Median 1.2004 1.1991 NaN 1 0 Median 1.1178 1.2803 NaN 1 0 Median 1.1776 1.1346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4401700 1995600 2406100 893780 420250 473530 2600700 1151000 1449700 433540 192430 241110 473710 231970 241740 0 0 0 0 0 0 11446 2878 11917 58186;58187;58188;58189 58435;58436 58436 2 GKLDGNQDLIR PIASIFAWTRGLEHRGKLDGNQDLIRFAQM LEHRGKLDGNQDLIRFAQMLEKVCVETVES R G K I R F 0 1 1 2 0 1 0 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1227.6571 P48735 P48735 383 393 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2;3 0.00065468 113.22 By MS/MS By MS/MS By MS/MS 2 2 1 1.1134 1.0714 26.273 5 Median 0.90565 0.90343 18.221 2 0 Median 1.5842 1.467 6.135 2 0 Median NaN NaN NaN 0 0 Median 1.1134 1.0714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25081000 12088000 12993000 16330000 8920600 7408900 6793300 2503400 4289900 0 0 0 1958200 664210 1294000 0 0 0 0 0 0 11447 2367 11918 58190;58191;58192;58193;58194 58437;58438;58439;58440;58441;58442;58443;58444 58442 8 GKLDVQFSGLTK GKPTHFTVNAKAAGKGKLDVQFSGLTKGDA AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K G K T K G 0 0 0 1 0 1 0 2 0 0 2 2 0 1 0 1 1 0 0 1 0 0 12 1 1291.7136 P21333;Q60FE5;A0A087WWY3 P21333 905 916 FLNA Filamin-A no no 2;3 4.9313E-07 129.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 3 5 1 1 0.98482 0.9237 35.802 19 Median 0.98482 0.90911 42.592 5 1 Median 0.97679 0.93807 47.943 4 1 Median 0.98187 1.1396 37.08 3 0 Median 0.98808 0.9237 29.245 5 0 Median 0.79335 0.85247 NaN 1 0 Median 1.3711 1.2633 NaN 1 0 Median 614000000 312190000 301810000 327570000 164280000 163290000 226470000 117770000 108700000 42636000 21134000 21501000 10505000 5831300 4673200 6464400 2998100 3466300 357820 172740 185080 11448 2088;3120 11919 58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209;58210;58211;58212;58213 58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456;58457;58458;58459;58460;58461;58462;58463;58464;58465;58466;58467;58468;58469;58470;58471 58467 26 GKLDVQFSGLTKGDAVR GKPTHFTVNAKAAGKGKLDVQFSGLTKGDA LDVQFSGLTKGDAVRDVDIIDHHDNTYTVK K G K V R D 1 1 0 2 0 1 0 3 0 0 2 2 0 1 0 1 1 0 0 2 0 0 17 2 1789.9686 P21333;Q60FE5;A0A087WWY3 P21333 905 921 FLNA Filamin-A no no 3 0.036425 26.474 By MS/MS 2 1.2021 1.2894 21.441 2 Median 1.2021 1.2894 21.441 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8930200 3858800 5071400 8930200 3858800 5071400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11449 2088;3120 11920 58214;58215 58472 58472 0 GKLEAIITPPPAK PNIHPELLAKKRGSKGKLEAIITPPPAKKA SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K G K A K K 2 0 0 0 0 0 1 1 0 2 1 2 0 0 3 0 1 0 0 0 0 0 13 1 1333.7969 O75367;D6RCF2 O75367 122 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 1.0586E-05 130.56 By MS/MS By MS/MS 10 9 0.73932 0.71773 14.764 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58912 0.63215 10.264 10 0 Median 0.89154 0.80951 8.6601 9 0 Median 452730000 259570000 193150000 0 0 0 0 0 0 0 0 0 0 0 0 316270000 191260000 125010000 136460000 68313000 68144000 11450 1662 11921 58216;58217;58218;58219;58220;58221;58222;58223;58224;58225;58226;58227;58228;58229;58230;58231;58232;58233;58234 58473;58474;58475;58476;58477;58478;58479;58480;58481;58482;58483;58484;58485;58486;58487;58488;58489;58490;58491;58492;58493;58494;58495;58496;58497;58498;58499;58500;58501;58502;58503;58504;58505;58506;58507;58508 58476 36 GKLEAIITPPPAKK PNIHPELLAKKRGSKGKLEAIITPPPAKKA KGKLEAIITPPPAKKAKSPSQKKPVSKKAG K G K K K A 2 0 0 0 0 0 1 1 0 2 1 3 0 0 3 0 1 0 0 0 0 0 14 2 1461.8919 O75367;D6RCF2 O75367 122 135 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 4.9545E-08 108.56 By MS/MS By MS/MS 6 3 0.62196 0.6805 29.708 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57424 0.6283 19.458 6 1 Median 1.0331 1.0119 22.075 3 0 Median 273960000 160870000 113090000 0 0 0 0 0 0 0 0 0 0 0 0 264500000 156690000 107800000 9461500 4175400 5286100 11451 1662 11922 58235;58236;58237;58238;58239;58240;58241;58242;58243 58509;58510;58511;58512;58513;58514;58515;58516;58517;58518;58519;58520;58521;58522;58523 58520 14 GKLEEQRPER EAYKKYIKDYMKSIKGKLEEQRPERVKPFM MKSIKGKLEEQRPERVKPFMTGAAEQIKHI K G K E R V 0 2 0 0 0 1 3 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 10 2 1240.6524 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7 Q5W0H4 101 110 TPT1 Translationally-controlled tumor protein yes no 3 0.00097513 58.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.86343 0.86791 16.503 5 Median 0.86503 0.86791 NaN 1 0 Median 0.83985 0.92959 NaN 1 0 Median 0.98972 1.1357 NaN 1 0 Median 0.86343 0.74863 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81025 0.77998 NaN 1 0 Median 8420800 4517200 3903600 781300 368810 412490 2614900 1503400 1111400 1948900 955770 993110 3040400 1670100 1370300 0 0 0 35326 19036 16290 11452 222 11923 58244;58245;58246;58247;58248 58524;58525;58526;58527;58528;58529;58530;58531 58530 8 GKLNITSLQFK VFRLDSDAAGVFCIRGKLNITSLQFKRSEV FCIRGKLNITSLQFKRSEVSEEVTENGTEE R G K F K R 0 0 1 0 0 1 0 1 0 1 2 2 0 1 0 1 1 0 0 0 0 0 11 1 1247.7238 Q3B726 Q3B726 196 206 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 0.011674 53.327 By MS/MS By matching 1 1 1.2648 1.2459 3.1632 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1181 1.2184 NaN 1 0 Median 1.4309 1.2741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9999300 4861000 5138300 0 0 0 0 0 0 8841500 4375500 4466100 1157800 485550 672270 0 0 0 0 0 0 11453 3009 11924 58249;58250 58532 58532 1 GKLPIVNEDDELVAIIAR ITLKEANEILQRSKKGKLPIVNEDDELVAI PIVNEDDELVAIIARTDLKKNRDYPLASKD K G K A R T 2 1 1 2 0 0 2 1 0 3 2 1 0 0 1 0 0 0 0 2 0 0 18 1 1964.0942 P12268;H0Y4R1;E7ETK5 P12268 207 224 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 0.064922 9.3701 By MS/MS 1 0.90636 0.82792 NaN 1 Median NaN NaN NaN 0 0 Median 0.90636 0.82792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3002800 1504200 1498500 0 0 0 3002800 1504200 1498500 0 0 0 0 0 0 0 0 0 0 0 0 11454 1148 11925 58251 58533 58533 1 GKLSAEENPDDSEVPSSSGINSTK REERKTREKKSLQEKGKLSAEENPDDSEVP DDSEVPSSSGINSTKSQDKDVNEGETSDGV K G K T K S 1 0 2 2 0 0 3 2 0 1 1 2 0 0 2 6 1 0 0 1 0 0 24 1 2447.13 Q9Y5Q9;A0A494C1S7 Q9Y5Q9 40 63 GTF3C3 General transcription factor 3C polypeptide 3 yes no 3 1.1501E-08 49.638 By MS/MS 1 0.50244 0.57406 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50244 0.57406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6687800 4495400 2192400 0 0 0 0 0 0 6687800 4495400 2192400 0 0 0 0 0 0 0 0 0 11455 4467 11926 58252 58534;58535 58535 2 GKNASDMPETITSR LPIFFGALRSVRCARGKNASDMPETITSRD RGKNASDMPETITSRDAARFPIIASCTLLG R G K S R D 1 1 1 1 0 0 1 1 0 1 0 1 1 0 1 2 2 0 0 0 0 0 14 1 1505.7144 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72;A0A0C4DGU3 A0A3B3IUB5 60 73 HM13 Minor histocompatibility antigen H13 yes no 3 0.051033 23.481 By MS/MS 1 0.91767 0.931 NaN 1 Median 0.91767 0.931 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1145700 676690 469050 1145700 676690 469050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11456 444 11927 58253 58536 58536 1 GKNEESLESTEGFR AGATGKDLQGATEERGKNEESLESTEGFRA RGKNEESLESTEGFRAAEQGVQKPAAETPA R G K F R A 0 1 1 0 0 0 4 2 0 0 1 1 0 1 0 2 1 0 0 0 0 0 14 1 1581.7271 A0A087WWW8;Q9Y6J0 A0A087WWW8 1384 1397 CABIN1 Calcineurin-binding protein cabin-1 yes no 3 0.0065923 27.029 By matching By MS/MS 1 1 0.97089 1.0447 0.50082 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87419 1.0484 NaN 1 0 Median 1.0783 1.041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6327500 3147200 3180300 0 0 0 0 0 0 5391100 2662100 2729000 936410 485070 451340 0 0 0 0 0 0 11457 64 11928 58254;58255 58537 58537 1 GKNNTVGLIQLNRPK FASGANFEYIIAEKRGKNNTVGLIQLNRPK GKNNTVGLIQLNRPKALNALCDGLIDELNQ R G K P K A 0 1 3 0 0 1 0 2 0 1 2 2 0 0 1 0 1 0 0 1 0 0 15 2 1650.9529 P30084 P30084 42 56 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3;4 5.4132E-10 152.07 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 1.286 1.115 22.238 11 Median 0.91137 0.97042 6.7517 3 0 Median 1.2912 1.1195 24.147 3 0 Median 0.99426 1.1132 34.129 2 0 Median 1.603 1.3222 16.615 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128700000 61430000 67273000 57358000 29003000 28355000 44498000 19928000 24570000 17647000 8754900 8892000 9199900 3743800 5456000 0 0 0 0 0 0 11458 2186 11929 58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267 58538;58539;58540;58541;58542;58543;58544;58545;58546;58547;58548;58549;58550;58551 58538 14 GKNQAFIEMNTEEAANTMVNYYTSVTPVLR LGLPFGKVTNLLMLKGKNQAFIEMNTEEAA NTMVNYYTSVTPVLRGQPIYIQFSNHKELK K G K L R G 3 1 4 0 0 1 3 1 0 1 1 1 2 1 1 1 4 0 2 3 0 0 30 1 3390.6224 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59 A0A0U1RRM4 93 122 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 3.5314E-09 44.05 By MS/MS By MS/MS By MS/MS 1 1 1 0.82413 0.85588 1.2956 3 Median 0.85855 0.86978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7558 0.84777 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82413 0.85588 NaN 1 0 Median NaN NaN NaN 0 0 Median 15231000 7540400 7690500 2195800 1005100 1190700 0 0 0 10926000 5441600 5483900 0 0 0 2109500 1093700 1015800 0 0 0 11459 312 11930 58268;58269;58270 58552;58553;58554;58555;58556 58554 5 GKNVIHPFLSR AVAVHPKDTRYQHLKGKNVIHPFLSRSLPI QHLKGKNVIHPFLSRSLPIVFDEFVDMDFG K G K S R S 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 11 1 1266.7197 P26640;A0A140T936 P26640 561 571 VARS Valine--tRNA ligase yes no 3 0.010755 30.205 By MS/MS By MS/MS 1 1 0.95102 1.0318 46.086 2 Median 0.72017 0.74488 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2559 1.4293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3443200 1837000 1606200 1151300 752750 398540 0 0 0 2291900 1084200 1207700 0 0 0 0 0 0 0 0 0 11460 2148 11931 58271;58272 58557;58558 58557 2 GKPAVAALGDLTDLPTYEHIQTALSSK VKPEDVKRVASKMLRGKPAVAALGDLTDLP DLPTYEHIQTALSSKDGRLPRTYRLFR___ R G K S K D 4 0 0 2 0 1 1 2 1 1 4 2 0 0 2 2 3 0 1 1 0 0 27 1 2795.4705 Q10713 Q10713 487 513 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 4 1.5803E-08 39.122 By MS/MS 1 1.238 1.158 NaN 1 Median NaN NaN NaN 0 0 Median 1.238 1.158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17037000 6770700 10266000 0 0 0 17037000 6770700 10266000 0 0 0 0 0 0 0 0 0 0 0 0 11461 2754 11932 58273 58559;58560;58561 58561 3 GKPDLNTALPVR KSRQRVRYDSSNQVKGKPDLNTALPVRQTA QVKGKPDLNTALPVRQTASIFKQPVTKITN K G K V R Q 1 1 1 1 0 0 0 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 1 1279.7248 O95983;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 91 102 MBD3 Methyl-CpG-binding domain protein 3 yes no 2;3 1.9367E-05 113.22 By MS/MS By MS/MS By MS/MS 2 2 4 0.7102 0.74931 9.4779 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68455 0.74283 4.387 2 0 Median 0.82813 0.78151 7.1484 2 0 Median 0.67579 0.72501 12.041 4 1 Median NaN NaN NaN 0 0 Median 55201000 31960000 23241000 0 0 0 0 0 0 22836000 13038000 9798700 9321200 5094500 4226800 23043000 13828000 9215100 0 0 0 11462 1804 11933 58274;58275;58276;58277;58278;58279;58280;58281 58562;58563;58564;58565;58566;58567;58568;58569;58570;58571 58562 10 GKPLALVEEIR STPGTIILGTIPVPKGKPLALVEEIRNRKD PVPKGKPLALVEEIRNRKDVKVFNSPYCVI K G K I R N 1 1 0 0 0 0 2 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1223.7238 Q5TDF0;Q9BSD7 Q5TDF0 149 159 NTPCR Cancer-related nucleoside-triphosphatase yes no 2;3 4.9933E-05 82.261 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 3 1 1.0016 0.98231 19.139 13 Median 0.91673 0.9096 9.191 3 0 Median 1.2771 1.162 20.388 4 0 Median 0.89263 0.93415 5.3771 2 0 Median NaN NaN NaN 0 0 Median 0.87075 0.98231 29.496 3 0 Median 1.3935 1.1145 NaN 1 0 Median 91954000 45776000 46178000 40335000 20833000 19502000 6147900 2966700 3181200 28567000 14216000 14351000 0 0 0 15797000 7239500 8557300 1106700 520210 586470 11463 3102 11934 58282;58283;58284;58285;58286;58287;58288;58289;58290;58291;58292;58293;58294 58572;58573;58574;58575;58576;58577;58578;58579;58580;58581;58582;58583 58573 12 GKPLPEYHVR FLRNELEIPGQYDGRGKPLPEYHVRIAGFD QYDGRGKPLPEYHVRIAGFDERVTVMASLR R G K V R I 0 1 0 0 0 0 1 1 1 0 1 1 0 0 2 0 0 0 1 1 0 0 10 1 1194.6509 P78527 P78527 3709 3718 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0008236 70.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26842000 0 26842000 3315600 0 3315600 10692000 0 10692000 5090600 0 5090600 3182800 0 3182800 2290400 0 2290400 2269900 0 2269900 11464 2647 11935 58295;58296;58297;58298;58299;58300;58301;58302;58303;58304;58305 58584;58585;58586;58587;58588;58589;58590;58591;58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602 58593 19 GKPMELIIGK HSDDEGTVLDDSRARGKPMELIIGKKFKLP DSRARGKPMELIIGKKFKLPVWETIVCTMR R G K G K K 0 0 0 0 0 0 1 2 0 2 1 2 1 0 1 0 0 0 0 0 0 0 10 1 1084.6315 O00170;E9PMH2 O00170 57 66 AIP AH receptor-interacting protein yes no 2 0.031557 48.794 By MS/MS By MS/MS By MS/MS 2 2 1 0.97877 0.88174 16.704 5 Median 0.85454 0.81471 5.6144 2 0 Median 1.1136 1.0073 18.828 2 0 Median 1.0417 1.0922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21539000 11256000 10283000 13582000 7462600 6119400 4869000 2304900 2564100 3088500 1488400 1600000 0 0 0 0 0 0 0 0 0 11465 1445 11936 58306;58307;58308;58309;58310 58603;58604;58605 58605 3 GKPMELIIGKK HSDDEGTVLDDSRARGKPMELIIGKKFKLP SRARGKPMELIIGKKFKLPVWETIVCTMRE R G K K K F 0 0 0 0 0 0 1 2 0 2 1 3 1 0 1 0 0 0 0 0 0 0 11 2 1212.7264 O00170;E9PMH2 O00170 57 67 AIP AH receptor-interacting protein yes no 3 0.011812 29.341 By MS/MS By matching 2 1 0.93639 0.97815 13.471 3 Median 0.92062 0.9528 3.7127 2 0 Median 1.2059 1.1978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6337100 2970400 3366700 5043700 2370300 2673400 1293400 600120 693330 0 0 0 0 0 0 0 0 0 0 0 0 11466 1445 11937 58311;58312;58313 58606;58607 58607 2 GKPPDVSTEAFLTNLSIQSK SSSISAGSLTSLSLRGKPPDVSTEAFLTNL VSTEAFLTNLSIQSKQEETVESKEKTLKRQ R G K S K Q 1 0 1 1 0 1 1 1 0 1 2 2 0 1 2 3 2 0 0 1 0 0 20 1 2131.1161 Q92576;E7ER40 Q92576 1562 1581 PHF3 PHD finger protein 3 yes no 3 1.41E-07 57.989 By MS/MS By matching 2 2 0.66517 0.69077 7.9704 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55663 0.64089 5.9964 2 0 Median 0.76935 0.72442 2.1266 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17761000 10968000 6793600 0 0 0 0 0 0 16950000 10500000 6449900 811370 467740 343630 0 0 0 0 0 0 11467 3539 11938 58314;58315;58316;58317 58608;58609 58609 2 GKPPPLLPSVLGPAGGDR LPAGGGLPPELPPRRGKPPPLLPSVLGPAG PPLLPSVLGPAGGDREALGLGPPAAQLTPP R G K D R E 1 1 0 1 0 0 0 4 0 0 3 1 0 0 5 1 0 0 0 1 0 0 18 1 1726.973 A0A087WZ13;E9PAU2;Q8IY67 A0A087WZ13 433 450 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 3 3.2566E-05 47.754 By MS/MS 1 0.27035 0.28695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27035 0.28695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6161300 4914600 1246700 0 0 0 0 0 0 6161300 4914600 1246700 0 0 0 0 0 0 0 0 0 11468 90 11939 58318 58610 58610 1 GKPVGLVGVTELSDAQKK SPLSVQDLKGLGYEKGKPVGLVGVTELSDA VGLVGVTELSDAQKKQLKEQQEMQQMYDMI K G K K K Q 1 0 0 1 0 1 1 3 0 0 2 3 0 0 1 1 1 0 0 3 0 0 18 2 1825.0309 Q8IWZ8 Q8IWZ8 426 443 SUGP1 SURP and G-patch domain-containing protein 1 yes yes 3 5.3068E-05 45.704 By MS/MS By matching 1 1 0.90942 1.0325 8.3692 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84173 0.97314 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98256 1.0954 NaN 1 0 Median NaN NaN NaN 0 0 Median 10642000 5977300 4664200 0 0 0 0 0 0 6719900 3696800 3023100 0 0 0 3921700 2280500 1641200 0 0 0 11469 3330 11940 58319;58320 58611 58611 1 GKSETILSPPPEKR PRIHPELLAKKRGTKGKSETILSPPPEKRG KGKSETILSPPPEKRGRKATSGKKGGKKSK K G K K R G 0 1 0 0 0 0 2 1 0 1 1 2 0 0 3 2 1 0 0 0 0 0 14 2 1537.8464 Q9P0M6 Q9P0M6 122 135 H2AFY2 Core histone macro-H2A.2 yes yes 3 0.00011884 72.321 By MS/MS By MS/MS 1 2 0.95878 0.8931 29.917 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48973 0.57082 NaN 1 0 Median 1.0327 0.94834 8.4865 2 0 Median 12012000 7214600 4797500 0 0 0 0 0 0 0 0 0 0 0 0 9725900 6164900 3561000 2286200 1049700 1236500 11470 4206 11941 58321;58322;58323 58612;58613;58614;58615;58616 58614 5 GKVCFEMK AFLWAGGRASYGVSKGKVCFEMKVTEKIPV ASYGVSKGKVCFEMKVTEKIPVRHLYTKDI K G K M K V 0 0 0 0 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 8 1 997.47251 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74 Q00839 332 339 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.064186 52.786 By MS/MS By matching 2 1 1.107 1.1939 4.6764 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0829 1.1834 6.5739 2 0 Median 1.3395 1.1939 NaN 1 0 Median 12536000 5427100 7109200 0 0 0 0 0 0 0 0 0 0 0 0 11582000 4987200 6594900 954080 439860 514230 11471 2680 11942 58324;58325;58326 58617 58617 1 GKVEEVELPVEK IVKANKLDHVVTIIKGKVEEVELPVEKVDI IIKGKVEEVELPVEKVDIIISEWMGYCLFY K G K E K V 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 0 3 0 0 12 1 1354.7344 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4;Q9NR22 E9PKG1 98 109 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 2;3 8.6259E-10 134.38 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 0.87405 0.81385 13.76 9 Median 0.87244 0.81182 6.4774 2 1 Median 0.93704 0.84511 9.9954 2 0 Median 0.73735 0.8035 23.861 3 0 Median 0.94645 0.84277 4.9379 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83074000 42096000 40978000 18811000 9387100 9424300 17751000 8352100 9399000 38321000 20134000 18187000 8190800 4222800 3968000 0 0 0 0 0 0 11472 947 11943 58327;58328;58329;58330;58331;58332;58333;58334;58335;58336 58618;58619;58620;58621;58622;58623;58624;58625;58626;58627;58628;58629;58630;58631;58632;58633 58619 16 GKVEIDQQQLTQQQLNGN DERDEEDEERESKSRGKVEIDQQQLTQQQL EIDQQQLTQQQLNGN_______________ R G K G N - 0 0 2 1 0 6 1 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 18 1 2040.0236 Q8IWS0;A0A0D9SGE8 Q8IWS0 348 365 PHF6 PHD finger protein 6 yes no 2;3 4.0607E-13 119.69 By matching By MS/MS By MS/MS 1 3 2 1.1121 1.0711 18.846 6 Median 0.76996 0.7422 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0249 1.0594 19.651 3 1 Median 1.2483 1.0876 0.6087 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38600000 18079000 20521000 2351600 1284500 1067100 0 0 0 26807000 12713000 14094000 9441200 4081300 5359900 0 0 0 0 0 0 11473 3327 11944 58337;58338;58339;58340;58341;58342 58634;58635;58636;58637;58638;58639 58639 6 GKVEYLLK EEYVVEKVLDRRVVKGKVEYLLKWKGFSDE LDRRVVKGKVEYLLKWKGFSDEDNTWEPEE K G K L K W 0 0 0 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 1 1 0 0 8 1 948.56442 P83916;B5MD17;J3KS05;K7ELA4;C9JWS9 P83916 34 41 CBX1 Chromobox protein homolog 1 yes no 2 0.014613 101.64 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 3 3 1.2855 1.2265 20.92 10 Median 1.085 1.1026 NaN 1 0 Median 1.2939 1.1828 NaN 1 0 Median 1.0514 1.0465 NaN 1 0 Median 1.413 1.2719 NaN 1 0 Median 1.2213 1.3267 33.748 3 0 Plateau 1.6487 1.4309 14.174 3 0 Plateau 227330000 103080000 124250000 14630000 6868400 7761600 4633500 1937700 2695700 14754000 7213400 7540300 2376200 1049600 1326600 163070000 74931000 88140000 27862000 11078000 16784000 11474 2663 11945 58343;58344;58345;58346;58347;58348;58349;58350;58351;58352 58640;58641;58642;58643;58644;58645 58645 6 GKVLDAIIQEK KVEEAKSSLAMNRSRGKVLDAIIQEKKSGR NRSRGKVLDAIIQEKKSGRIPGIYGRLGDL R G K E K K 1 0 0 1 0 1 1 1 0 2 1 2 0 0 0 0 0 0 0 1 0 0 11 1 1212.7078 Q9NTJ3;E9PD53 Q9NTJ3 597 607 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00070542 83.499 By MS/MS By matching 1 1 1.1424 1.2113 6.114 2 Median 1.1854 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.101 1.2648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12048000 5420800 6626700 6498800 2770000 3728800 0 0 0 5548800 2650800 2898000 0 0 0 0 0 0 0 0 0 11475 4108 11946 58353;58354 58646 58646 1 GKVPMVVLQDILAVRPPQIK KEQDSWSEAGGILFKGKVPMVVLQDILAVR VVLQDILAVRPPQIKSLPATPQGKNMTPES K G K I K S 1 1 0 1 0 2 0 1 0 2 2 2 1 0 3 0 0 0 0 4 0 0 20 2 2200.313 Q13111;K7EPA1 Q13111 235 254 CHAF1A Chromatin assembly factor 1 subunit A yes no 3 0.038481 12.848 By matching By MS/MS 1 1 0.63006 0.73011 3.6356 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62448 0.71158 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63569 0.74912 NaN 1 0 Median NaN NaN NaN 0 0 Median 2343500 1416300 927250 0 0 0 0 0 0 849320 525570 323750 0 0 0 1494200 890690 603500 0 0 0 11476 2785 11947 58355;58356 58647 58647 1 GKWEKPFEMK DPNTVFALVNYISFKGKWEKPFEMKHTTER YISFKGKWEKPFEMKHTTERDFHVDEQTTV K G K M K H 0 0 0 0 0 0 2 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 10 2 1278.6431 CON__P34955 CON__P34955 214 223 yes yes 3 0.0031846 86.344 By MS/MS By MS/MS 2 1 0.046176 0.044623 174.07 2 Median 0.15709 0.15279 NaN 1 1 Median 0.013573 0.013032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81068000 79714000 1353600 60676000 59475000 1200500 20392000 20239000 153180 0 0 0 0 0 0 0 0 0 0 0 0 + 11477 763 11948 58357;58358;58359 58648;58649;58650 58650 3 GKYKEETIEK ILERKAKSRQVGKEKGKYKEETIEKMQE__ VGKEKGKYKEETIEKMQE____________ K G K E K M 0 0 0 0 0 0 3 1 0 1 0 3 0 0 0 0 1 0 1 0 0 0 10 2 1223.6398 P61254 P61254 133 142 RPL26 60S ribosomal protein L26 yes yes 3 0.048575 19.243 By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1.064 1.0193 15.205 7 Median 0.92106 0.985 16.052 2 0 Median 0.95681 0.8991 10.428 2 0 Median 1.064 1.2005 NaN 1 0 Median 1.1086 1.0193 NaN 1 0 Median 1.143 1.2505 NaN 1 0 Median NaN NaN NaN 0 0 Median 5848700 2969700 2879000 2853000 1455500 1397500 1888700 956780 931960 372780 182750 190030 542570 284770 257800 191620 89872 101750 0 0 0 11478 2554 11949 58360;58361;58362;58363;58364;58365;58366 58651;58652 58652 2 GLAAEDSGGDSK GNSPPSSGEACREEKGLAAEDSGGDSKDLS EEKGLAAEDSGGDSKDLSEVSETTESTDVK K G L S K D 2 0 0 2 0 0 1 3 0 0 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1105.4887 P41227 P41227 199 210 NAA10 N-alpha-acetyltransferase 10 yes yes 2 0.0081325 38.086 By MS/MS By matching By matching By matching 1 1 1 1 1.2468 1.1026 20.517 4 Median 1.3081 1.294 NaN 1 0 Median 0.96513 0.81558 NaN 1 0 Median 1.3327 1.2015 NaN 1 0 Median 1.1884 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1566900 625880 940980 928570 396470 532100 231930 74685 157240 120660 33301 87354 285710 121420 164280 0 0 0 0 0 0 11479 2298 11950 58367;58368;58369;58370 58653;58654 58654 2 GLAAGSAETLPANFR RAPSWRKKFRPKDIRGLAAGSAETLPANFR GLAAGSAETLPANFRVTSSMSSPSMQPKKM R G L F R V 4 1 1 0 0 0 1 2 0 0 2 0 0 1 1 1 1 0 0 0 0 0 15 0 1473.7576 A0A2R8Y7R9;Q13136 A0A2R8Y7R9 1173 1187 PPFIA1 Liprin-alpha-1 yes no 2 0.0045311 35.959 By matching By matching By matching By matching By MS/MS 1 1 1 1 2 0.71649 0.68929 91.553 6 Median 1.4082 1.2974 NaN 1 0 Median 5.7698 5.1665 NaN 1 0 Median 0.63075 0.69381 NaN 1 0 Median 0.81388 0.68481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55993 0.46695 10.814 2 0 Median 9842300 4809700 5032600 3112000 1027400 2084600 391020 55895 335130 5244100 3058300 2185800 285360 192480 92880 0 0 0 809840 475640 334200 11480 382 11951 58371;58372;58373;58374;58375;58376 58655 58655 1 GLAAHYFFPR VPTKTHVLLHRMSGKGLAAHYFFPRQPCIF RMSGKGLAAHYFFPRQPCIFGDKMVSIQIT K G L P R Q 2 1 0 0 0 0 0 1 1 0 1 0 0 2 1 0 0 0 1 0 0 0 10 0 1177.6033 O00203 O00203 881 890 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.024897 50.127 By MS/MS 1 0.91073 0.87919 NaN 1 Median 0.91073 0.87919 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7409400 3913200 3496200 7409400 3913200 3496200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11481 1447 11952 58377 58656 58656 1 GLAAITMDKEYQQK GAAGVVSRITGSVGKGLAAITMDKEYQQKR KGLAAITMDKEYQQKRREELSRQPRDFGDS K G L Q K R 2 0 0 1 0 2 1 1 0 1 1 2 1 0 0 0 1 0 1 0 0 0 14 1 1594.8025 Q709C8;A0A3B3IU50 Q709C8 3488 3501 VPS13C Vacuolar protein sorting-associated protein 13C yes no 2 0.024419 53.683 By MS/MS 1 1.5262 1.6585 NaN 1 Median 1.5262 1.6585 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4630500 1635100 2995400 4630500 1635100 2995400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11482 3205 11953 58378 58657 58657 1 GLAFLDELR MANSTGKAPPDERRKGLAFLDELRQFHHSR PDERRKGLAFLDELRQFHHSRGSPFKKIPA K G L L R Q 1 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5604 Q68CP9 Q68CP9 16 24 ARID2 AT-rich interactive domain-containing protein 2 yes yes 2 0.0025948 70.919 By MS/MS By matching By matching 3 2 1 1.2462 1.1535 18.501 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2841 1.3332 16.675 3 0 Median 1.32 1.1535 15.061 2 0 Median 0.86133 0.86652 NaN 1 0 Median NaN NaN NaN 0 0 Median 6096700 2901800 3195000 0 0 0 0 0 0 4904800 2377600 2527100 906830 343100 563730 285120 181050 104080 0 0 0 11483 3122 11954 58379;58380;58381;58382;58383;58384 58658;58659 58658 2 GLAGAVSELLR EDEGGSGRPLLQAAKGLAGAVSELLRSAQP QAAKGLAGAVSELLRSAQPASAEPRQNLLQ K G L L R S 2 1 0 0 0 0 1 2 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1084.6241 Q9Y490 Q9Y490 614 624 TLN1 Talin-1 yes yes 2 0.0019387 56.258 By MS/MS By MS/MS By MS/MS 2 2 1 1.1024 1.0344 6.1653 5 Median 1.058 1.0263 1.1107 2 0 Median 1.2866 1.0624 5.784 2 0 Median 1.0744 1.1712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140100000 62883000 77217000 30416000 14282000 16133000 76040000 32078000 43962000 33644000 16522000 17122000 0 0 0 0 0 0 0 0 0 11484 4441 11955 58385;58386;58387;58388;58389 58660;58661;58662;58663;58664;58665;58666;58667;58668 58668 9 GLAGLGDVAEVR KPLTDSEKRKQISVRGLAGLGDVAEVRKSF SVRGLAGLGDVAEVRKSFNRHLHFTLVKDR R G L V R K 2 1 0 1 0 0 1 3 0 0 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1155.6248 P11216 P11216 18 29 PYGB Glycogen phosphorylase, brain form yes yes 2 0.00014263 88.496 By MS/MS By MS/MS By MS/MS 2 1 1 1.3292 1.2138 23.971 4 Median 1.5513 1.5085 11.19 2 2 Median 1.2231 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.14 0.97547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21220000 8775800 12444000 10684000 4125100 6558900 9847300 4322700 5524500 0 0 0 688250 327940 360310 0 0 0 0 0 0 11485 1956 11956 58390;58391;58392;58393 58669;58670;58671;58672;58673 58671 5 GLAGLGDVAEVRK KPLTDSEKRKQISVRGLAGLGDVAEVRKSF VRGLAGLGDVAEVRKSFNRHLHFTLVKDRN R G L R K S 2 1 0 1 0 0 1 3 0 0 2 1 0 0 0 0 0 0 0 2 0 0 13 1 1283.7197 P11216 P11216 18 30 PYGB Glycogen phosphorylase, brain form yes yes 3 0.00040238 50.563 By MS/MS 1 1.3429 1.3969 NaN 1 Median 1.3429 1.3969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3749400 1742400 2007000 3749400 1742400 2007000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11486 1956 11957 58394 58674 58674 1 GLAITFVSDENDAK TYLHRVARAGRFGTKGLAITFVSDENDAKI KGLAITFVSDENDAKILNDVQDRFEVNISE K G L A K I 2 0 1 2 0 0 1 1 0 1 1 1 0 1 0 1 1 0 0 1 0 0 14 0 1478.7253 H0Y400;O00148;Q13838;A0A0G2JJZ9 Q13838 385 398 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 1.2713E-07 138.25 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 5 2 6 2 1.0571 0.99265 33.313 16 Median 1.3598 1.2654 NaN 1 0 Median 1.1771 0.99769 NaN 1 0 Median 1.2042 1.2002 36.088 5 1 Median 1.2603 1.1433 NaN 1 0 Median 0.97226 0.94726 40.262 6 1 Median 0.80933 0.7499 16.205 2 0 Median 1201600000 550570000 651010000 10068000 4027300 6040400 11397000 5250300 6146400 836810000 390480000 446330000 240400000 102020000 138380000 100920000 47820000 53097000 1994200 972520 1021700 11487 2842;1441;1146 11958 58395;58396;58397;58398;58399;58400;58401;58402;58403;58404;58405;58406;58407;58408;58409;58410;58411 58675;58676;58677;58678;58679;58680;58681;58682;58683;58684;58685;58686;58687;58688;58689;58690;58691;58692;58693;58694;58695;58696;58697 58687 23 GLALALFGGEPK ASIAPSIYGHEDIKRGLALALFGGEPKNPG IKRGLALALFGGEPKNPGGKHKVRGDINVL R G L P K N 2 0 0 0 0 0 1 3 0 0 3 1 0 1 1 0 0 0 0 0 0 0 12 0 1171.6601 P49736;H0Y8E6 P49736 494 505 MCM2 DNA replication licensing factor MCM2 yes no 2 0.028356 47.198 By MS/MS 1 0.93122 0.81897 NaN 1 Median NaN NaN NaN 0 0 Median 0.93122 0.81897 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091800 1152500 1939400 0 0 0 3091800 1152500 1939400 0 0 0 0 0 0 0 0 0 0 0 0 11488 2393 11959 58412 58698 58698 1 GLALDLEDGNFLK ELLNVTPEDWDFCCKGLALDLEDGNFLKLA CKGLALDLEDGNFLKLANNGTVLRASHGTK K G L L K L 1 0 1 2 0 0 1 2 0 0 4 1 0 1 0 0 0 0 0 0 0 0 13 0 1403.7296 Q5TFE4;Q5QPD0 Q5TFE4 65 77 NT5DC1 5-nucleotidase domain-containing protein 1 yes no 2;3 1.0083E-06 125.97 By MS/MS By MS/MS 1 1 0.48921 0.41678 112.02 2 Median NaN NaN NaN 0 0 Median 1.0851 0.92028 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.22057 0.18875 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11854000 6622300 5231400 0 0 0 9052900 4304200 4748700 0 0 0 2800800 2318100 482700 0 0 0 0 0 0 11489 3105 11960 58413;58414 58699;58700;58701 58699 3 GLALLNGEYLLAAQLGK GANLLTYRGGQAGPRGLALLNGEYLLAAQL ALLNGEYLLAAQLGKNYISAWELQRKVSTG R G L G K N 3 0 1 0 0 1 1 3 0 0 6 1 0 0 0 0 0 0 1 0 0 0 17 0 1742.9931 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0;K7EML4;A0A087X237;K7EKX5 U3KQC1 42 58 WDR18 WD repeat-containing protein 18 yes no 2 2.3465E-05 73.067 By MS/MS By MS/MS By matching 1 1 1 1.0958 1.0755 18.09 3 Plateau NaN NaN NaN 0 0 Median 0.90369 0.7741 NaN 1 1 Median 1.0958 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0794 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median 8593900 4289200 4304700 0 0 0 1460100 954700 505360 5952900 2774100 3178800 0 0 0 1180900 560340 620530 0 0 0 11490 147 11961 58415;58416;58417 58702;58703;58704 58703 3 GLALSNSDVIR SEFKEFSQSFDAAMKGLALSNSDVIRQVHN AAMKGLALSNSDVIRQVHNSFARQQMFEFD K G L I R Q 1 1 1 1 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1143.6248 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0;H0Y6Y4 Q5LJA5 127 137 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.00011928 135.79 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.27 1.0905 19.605 7 Median 1.2714 1.2332 21.152 2 1 Median 1.2904 1.0902 0.044375 2 0 Median 1.1143 1.0975 NaN 1 0 Median 1.233 1.0858 NaN 1 0 Median 1.6647 1.7641 NaN 1 0 Median NaN NaN NaN 0 0 Median 48856000 21533000 27324000 28302000 12903000 15399000 8182200 3429900 4752300 6960400 3110800 3849600 1729600 793330 936270 3681900 1295200 2386700 0 0 0 11491 3064 11962 58418;58419;58420;58421;58422;58423;58424 58705;58706;58707;58708;58709;58710;58711;58712;58713 58706 9 GLALWEAYR VFERALSSVGLHMTKGLALWEAYREFESAI GLHMTKGLALWEAYREFESAIVEAARPVAG K G L Y R E 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 0 1077.5607 A0A499FI31;Q15020;A0A494C0L2;F8W667;F8VVK9;F8VZM2 A0A499FI31 224 232 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.035824 34.808 By MS/MS 1 1.3521 1.1559 NaN 1 Median NaN NaN NaN 0 0 Median 1.3521 1.1559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2692600 1060400 1632200 0 0 0 2692600 1060400 1632200 0 0 0 0 0 0 0 0 0 0 0 0 11492 473 11963 58425 58714;58715 58714 2 GLANPEPAPEPK QLPDGTGREGPAAARGLANPEPAPEPKVLS AARGLANPEPAPEPKVLSSAASLPGSELPS R G L P K V 2 0 1 0 0 0 2 1 0 0 1 1 0 0 4 0 0 0 0 0 0 0 12 0 1218.6245 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09;Q8N9G1 O15027 2253 2264 SEC16A Protein transport protein Sec16A yes no 2 0.0011423 56.563 By MS/MS By MS/MS 1 2 0.67257 0.58879 9.7944 2 Median NaN NaN NaN 0 0 Median 0.67257 0.58879 9.7944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3346000 1652900 1693100 0 0 0 3346000 1652900 1693100 0 0 0 0 0 0 0 0 0 0 0 0 11493 1513 11964 58426;58427;58428 58716;58717;58718;58719 58717 4 GLAPDLPEDLYHLIK RFVTGNKILRILKSKGLAPDLPEDLYHLIK GLAPDLPEDLYHLIKKAVAVRKHLERNRKD K G L I K K 1 0 0 2 0 0 1 1 1 1 4 1 0 0 2 0 0 0 1 0 0 0 15 0 1692.9087 P62277;J3KMX5 P62277 79 93 RPS13 40S ribosomal protein S13 yes no 2 0.0029188 55.401 By MS/MS 2 0.72757 0.81887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72757 0.81887 NaN 1 1 Median NaN NaN NaN 0 0 Median 5537200 3187300 2349900 0 0 0 0 0 0 0 0 0 0 0 0 5537200 3187300 2349900 0 0 0 11494 2580 11965 58429;58430 58720;58721 58721 2 GLAPDLPEDLYHLIKK RFVTGNKILRILKSKGLAPDLPEDLYHLIK LAPDLPEDLYHLIKKAVAVRKHLERNRKDK K G L K K A 1 0 0 2 0 0 1 1 1 1 4 2 0 0 2 0 0 0 1 0 0 0 16 1 1821.0036 P62277;J3KMX5 P62277 79 94 RPS13 40S ribosomal protein S13 yes no 3 0.049503 10.196 By matching By MS/MS By matching By matching 1 1 1 1 0.95391 0.95465 9.3776 4 Median 0.8925 0.90133 NaN 1 0 Median 0.99126 0.87618 NaN 1 0 Median 0.97951 1.0111 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92897 1.068 NaN 1 0 Median NaN NaN NaN 0 0 Median 6042500 2878100 3164400 2047600 1140500 907130 698440 367780 330650 304230 174530 129700 0 0 0 2992200 1195200 1796900 0 0 0 11495 2580 11966 58431;58432;58433;58434 58722 58722 1 GLAPEVADR KVSWEEVKNEMVGEKGLAPEVADRIGDYVQ EMVGEKGLAPEVADRIGDYVQQHGGVSLVE K G L D R I 2 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 926.48214 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2;P49590;A0A2R8Y5P7;A0A2R8Y3N3;A0A2R8Y6I1;D6RJE6;D6RB22;B4DQ67 P12081 258 266 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS 1 1 2 1.4441 1.2259 13.221 4 Linear 1.2606 1.2404 NaN 1 0 Median 1.4461 1.2171 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2769 1.0803 18.893 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24830000 11726000 13105000 4766600 2227500 2539100 10042000 4740200 5302300 0 0 0 10021000 4758000 5263300 0 0 0 0 0 0 11496 1975 11967 58435;58436;58437;58438 58723;58724;58725;58726;58727;58728;58729 58728 7 GLATSLQNDLQEVPK ETLQNVRTRLEILEKGLATSLQNDLQEVPK GLATSLQNDLQEVPKLYPEFPPKDMCEKLP K G L P K L 1 0 1 1 0 2 1 1 0 0 3 1 0 0 1 1 1 0 0 1 0 0 15 0 1611.8468 Q8N0X7 Q8N0X7 98 112 SPG20 Spartin yes yes 2 0.0011235 42.743 By MS/MS By MS/MS 1 1 0.95198 0.9564 4.2358 2 Median 0.97788 0.92818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92675 0.98548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7218100 3530100 3687900 4326300 2148500 2177900 0 0 0 2891800 1381700 1510100 0 0 0 0 0 0 0 0 0 11497 3352 11968 58439;58440 58730;58731;58732 58731 3 GLAVFISDIR ______________________________ GDGMRGLAVFISDIRNCKSKEAEIKRINKE R G L I R N 1 1 0 1 0 0 0 1 0 2 1 0 0 1 0 1 0 0 0 1 0 0 10 0 1089.6182 O94973;E9PR62;M0R2D9;O95782 O95782 12 21 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 0.0027284 59.245 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 1 2 1 1 1.33 1.1943 18.558 8 Median 1.1957 1.1677 NaN 1 0 Median 1.5145 1.3249 26.226 2 0 Median 0.92513 0.99187 NaN 1 0 Median 1.2511 1.0704 18.674 2 0 Median 1.4274 1.5145 NaN 1 0 Median 1.4499 1.2269 NaN 1 0 Median 13605000 6008500 7596900 2858900 1266700 1592200 6862200 2871500 3990700 2668100 1331100 1337000 431640 200620 231020 707530 301320 406210 77017 37316 39701 11498 1793;1741 11969 58441;58442;58443;58444;58445;58446;58447;58448;58449 58733;58734;58735;58736;58737 58733 5 GLAVNMVDSK TYLHRIGRTGRFGKRGLAVNMVDSKHSMNI RFGKRGLAVNMVDSKHSMNILNRIQEHFNK R G L S K H 1 0 1 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 2 0 0 10 0 1032.5274 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 436 445 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 0.00036244 93.649 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1177 0.95399 41.607 4 Median 1.2261 1.1366 NaN 1 0 Median 1.184 1.005 NaN 1 0 Median 0.46311 0.44939 NaN 1 1 Median 1.0552 0.90561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37893000 19205000 18688000 12152000 5178600 6973200 7918700 3009100 4909600 14993000 9795300 5197600 2829600 1221800 1607700 0 0 0 0 0 0 11499 4121;1225 11970 58450;58451;58452;58453 58738;58739;58740;58741;58742;58743 58738 6 GLAYGLYLR GCRCAAEREEPPEQRGLAYGLYLRIDLERL EPPEQRGLAYGLYLRIDLERLQCLNESREG R G L L R I 1 1 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 0 2 0 0 0 9 0 1024.5706 Q9GZP4 Q9GZP4 26 34 PITHD1 PITH domain-containing protein 1 yes yes 2 0.0014584 81.297 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2791 1.1745 16.023 4 Median 1.386 1.3153 NaN 1 0 Median 1.5458 1.3142 NaN 1 0 Median 1.1189 1.0496 NaN 1 0 Median 1.1803 0.9594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17675000 7657800 10017000 14447000 6258200 8188800 1443700 547340 896360 1625500 772100 853390 158370 80218 78151 0 0 0 0 0 0 11500 3910 11971 58454;58455;58456;58457 58744;58745;58746;58747 58744 4 GLAYPARPAQLR YGDIRPSAASWVGSRGLAYPARPAQLRRRA GSRGLAYPARPAQLRRRASVRGSSEEDEDA R G L L R R 3 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 0 0 1 0 0 0 12 1 1311.7412 Q8NC56;H7C2Z0 Q8NC56 119 130 LEMD2 LEM domain-containing protein 2 yes no 3 0.0030838 56.359 By MS/MS By MS/MS 2 1 0.49667 0.48634 1.6201 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45361 0.49194 NaN 1 1 Median 0.54383 0.4808 NaN 1 1 Median 4328900 2706800 1622100 0 0 0 0 0 0 0 0 0 0 0 0 2196900 1320200 876760 2132000 1386600 745350 11501 3415 11972 58458;58459;58460 58748;58749;58750 58748 3 GLAYVEYENESQASQAVMK VKDLRLVTNRAGKPKGLAYVEYENESQASQ VEYENESQASQAVMKMDGMTIKENIIKVAI K G L M K M 3 0 1 0 0 2 3 1 0 0 1 1 1 0 0 2 0 0 2 2 0 0 19 0 2115.9783 A0A499FI31;Q15020;H0YHU8 A0A499FI31 860 878 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.002337 30.438 By MS/MS By matching By MS/MS 1 1 1 0.99237 0.96441 20.099 3 Median 0.98197 0.96441 NaN 1 0 Median 0.99237 0.90344 NaN 1 0 Median 1.2166 1.316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6991700 3446100 3545600 3997000 2151700 1845300 186650 114580 72073 2808100 1179800 1628200 0 0 0 0 0 0 0 0 0 11502 473 11973 58461;58462;58463 58751;58752 58751 2 GLCAIAQAESLR PEGSVELYAEKVATRGLCAIAQAESLRYKL ATRGLCAIAQAESLRYKLLGGLAVRRACYG R G L L R Y 3 1 0 0 1 1 1 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1287.6605 P23396;F2Z2S8;H0YCJ7;H0YF32 P23396 95 106 RPS3 40S ribosomal protein S3 yes no 2 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1.1192 0.98559 21.256 7 Median 1.1353 1.0612 NaN 1 0 Median 1.1648 0.98559 30.896 3 1 Median 0.9272 0.89295 1.0532 2 1 Median NaN NaN NaN 0 0 Median 1.1192 1.0991 NaN 1 0 Median NaN NaN NaN 0 0 Median 112110000 51056000 61053000 33652000 16088000 17564000 67548000 30402000 37146000 8944900 3662200 5282700 0 0 0 1964900 904570 1060300 0 0 0 11503 2112 11974 58464;58465;58466;58467;58468;58469;58470 58753;58754;58755;58756;58757;58758;58759;58760 58753 8 GLCGAIHSSIAK EDKKKHLLIGVSSDRGLCGAIHSSIAKQMK SDRGLCGAIHSSIAKQMKSEVATLTAAGKE R G L A K Q 2 0 0 0 1 0 0 2 1 2 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1212.6285 P36542 P36542 101 112 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2;3 4.8065E-06 102.06 By MS/MS By MS/MS 2 3 1.2486 1.0571 15.518 4 Median 0.95586 0.93017 NaN 1 0 Median 1.4051 1.1784 15.098 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34458000 13818000 20640000 2844400 1152500 1691900 31614000 12666000 18948000 0 0 0 0 0 0 0 0 0 0 0 0 11504 2257 11975 58471;58472;58473;58474;58475 58761;58762;58763;58764;58765 58764 5 GLCLLEQIDSFKPPQR LITRSQSSELTKWYKGLCLLEQIDSFKPPQ LCLLEQIDSFKPPQRSIDKPFRLCVSDVFK K G L Q R S 0 1 0 1 1 2 1 1 0 1 3 1 0 1 2 1 0 0 0 0 0 0 16 1 1899.9877 B7Z524;H0YDX7;J3QT46;Q9Y450;H0YES5 B7Z524 303 318 HBS1L HBS1-like protein yes no 3 0.0024795 29.733 By MS/MS 1 1.0847 1.0313 NaN 1 Median NaN NaN NaN 0 0 Median 1.0847 1.0313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2645300 1116400 1528900 0 0 0 2645300 1116400 1528900 0 0 0 0 0 0 0 0 0 0 0 0 11505 632 11976 58476 58766;58767 58766 2 GLDDSTGGTPLTPAAR RGPSSSLNTPGSFRRGLDDSTGGTPLTPAA LDDSTGGTPLTPAARISALNIVGDLLRKVG R G L A R I 2 1 0 2 0 0 0 3 0 0 2 0 0 0 2 1 3 0 0 0 0 0 16 0 1527.7529 I3L522;Q9NXR1;I3L2R3;I3L2T8;I3L533;I3L2R9 I3L522 115 130 NDE1 Nuclear distribution protein nudE homolog 1 yes no 2 0.00013936 61.435 By MS/MS By MS/MS 1 1 0.83814 0.82281 2.4165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7461 0.80887 NaN 1 0 Median 0.94155 0.83699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7301200 4191900 3109200 0 0 0 0 0 0 5941800 3470000 2471800 1359400 721940 637470 0 0 0 0 0 0 11506 1295 11977 58477;58478 58768;58769 58768 2 GLDDTVSIASR RTDYNEPGTIPSAARGLDDTVSIASRSREV SAARGLDDTVSIASRSREVSGFRGGGGGPA R G L S R S 1 1 0 2 0 0 0 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1132.5724 Q96T58 Q96T58 90 100 SPEN Msx2-interacting protein yes yes 2 0.00015337 114.5 By MS/MS By MS/MS 2 1 0.99445 0.88943 22.282 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0264 1.0412 NaN 1 1 Median 0.9635 0.75978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7549000 3233300 4315700 0 0 0 0 0 0 6287300 2568400 3719000 1261600 664920 596720 0 0 0 0 0 0 11507 3741 11978 58479;58480;58481 58770;58771;58772;58773 58773 4 GLDEDRGSWR RGNWRHADDDRPPRRGLDEDRGSWRTADED RPPRRGLDEDRGSWRTADEDRGPRRGMDDD R G L W R T 0 2 0 2 0 0 1 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 10 1 1189.5476 Q14152 Q14152 1021 1030 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.00036374 83 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2803600 0 2803600 2803600 0 2803600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11508 2860 11979 58482 58774 58774 1 GLDFALLQK SKFLGGDMEHTHLVKGLDFALLQKVRAEIA HTHLVKGLDFALLQKVRAEIASKEKEEEEL K G L Q K V 1 0 0 1 0 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1003.5702 Q13123;E7EQZ7;D6REL4 Q13123 165 173 IK Protein Red yes no 2 0.00093857 89.55 By matching By MS/MS By matching By MS/MS By matching 1 1 3 3 1 1.1242 1.0969 14.527 9 Median 1.3775 1.3958 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1119 1.1314 NaN 1 0 Median 1.2593 1.0969 12.404 3 0 Median 0.99504 1.0158 14.175 3 0 Median 1.1547 0.95593 NaN 1 0 Median 31246000 15406000 15840000 993290 407330 585960 0 0 0 10310000 5126800 5183100 1591200 802540 788650 16608000 8229800 8378600 1743400 839800 903610 11509 2787 11980 58483;58484;58485;58486;58487;58488;58489;58490;58491 58775;58776;58777;58778;58779 58778 5 GLDFSDR NAAYDKFKDKRVGTKGLDFSDRIGKTKRTG KDKRVGTKGLDFSDRIGKTKRTGYESGEYE K G L D R I 0 1 0 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 7 0 808.37153 Q13561;F8W1I6;F8VW18;F8VX93;F8VRV7;H0YHL1 Q13561 66 72 DCTN2 Dynactin subunit 2 yes no 2 0.016999 66.993 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.19 1.0357 20.233 4 Median 1.5425 1.526 NaN 1 0 Median 1.1614 0.99381 NaN 1 0 Median 1.0059 1.0141 NaN 1 0 Median 1.2193 1.0578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14122000 6162700 7959000 4203900 1590900 2613000 2948900 1345000 1603900 2409800 1274200 1135500 4559200 1952600 2606600 0 0 0 0 0 0 11510 2824 11981 58492;58493;58494;58495 58780;58781;58782;58783 58783 4 GLDGAVDMGAR MRRLQERMGRLRSGRGLDGAVDMGARGAAA RSGRGLDGAVDMGARGAAACDLVQRFVREA R G L A R G 2 1 0 2 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1060.4971 Q8IZ83;F5H4B6 Q8IZ83 335 345 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 2 0.00058837 82.287 By MS/MS By MS/MS 2 1 2.1264 1.8426 89.858 3 Median 2.5345 2.4158 125.14 2 1 Median 2.1264 1.8426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14991000 5385600 9605500 11432000 4033000 7398800 3559400 1352700 2206700 0 0 0 0 0 0 0 0 0 0 0 0 11511 3348 11982 58496;58497;58498 58784;58785 58785 2 GLDGIKELEIGQAGSQR IIDEFEQKLRACHTRGLDGIKELEIGQAGS DGIKELEIGQAGSQRAPSAKKPSTGSRYQP R G L Q R A 1 1 0 1 0 2 2 4 0 2 2 1 0 0 0 1 0 0 0 0 0 0 17 1 1769.9272 Q15021 Q15021 1296 1312 NCAPD2 Condensin complex subunit 1 yes yes 3 0.021725 18.76 By MS/MS 1 1.3193 1.3237 NaN 1 Median 1.3193 1.3237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14164000 6263900 7900200 14164000 6263900 7900200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11512 2915 11983 58499 58786 58786 1 GLDIEGVK DEQIDILVATDVAARGLDIEGVKTVINFTM ATDVAARGLDIEGVKTVINFTMPNTIKHYV R G L V K T 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 B7Z6D5;Q96GQ7 B7Z6D5 495 502 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.019915 67.032 By MS/MS 1 0.26257 0.26732 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26257 0.26732 NaN 1 1 Median NaN NaN NaN 0 0 Median 18352000 15054000 3298000 0 0 0 0 0 0 0 0 0 0 0 0 18352000 15054000 3298000 0 0 0 11513 635 11984 58500 58787 58787 1 GLDIPSIK KKDIPVLVATDVAARGLDIPSIKTVINYDV ATDVAARGLDIPSIKTVINYDVARDIDTHT R G L I K T 0 0 0 1 0 0 0 1 0 2 1 1 0 0 1 1 0 0 0 0 0 0 8 0 841.49092 Q86XP3;A0A0A0MSJ0 Q86XP3 561 568 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.023122 50.127 By matching By MS/MS By matching By matching 1 3 1 1 0.98538 0.84037 20.591 6 Median NaN NaN NaN 0 0 Median 0.99191 0.85368 NaN 1 0 Median 0.66256 0.7167 31.215 3 1 Median 0.97888 0.82728 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0367 0.88992 NaN 1 0 Median 9491100 5469500 4021600 0 0 0 753150 420400 332750 7998000 4694900 3303200 560900 251590 309310 0 0 0 179000 102660 76337 11514 3302 11985 58501;58502;58503;58504;58505;58506 58788;58789 58788 2 GLDIPTVQVVINHNTPGLPK SSIYRILIATDVASRGLDIPTVQVVINHNT TVQVVINHNTPGLPKIYIHRVGRTARAGRQ R G L P K I 0 0 2 1 0 1 0 2 1 2 2 1 0 0 3 0 2 0 0 3 0 0 20 0 2111.1739 Q9Y6V7 Q9Y6V7 311 330 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 3 0.03384 12.481 By matching By MS/MS 1 2 0.83147 0.81987 28.308 3 Median 1.0347 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69451 0.68956 24.479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510100 2959700 2550400 140820 74891 65930 0 0 0 5369200 2884800 2484400 0 0 0 0 0 0 0 0 0 11515 4497 11986 58507;58508;58509 58790 58790 1 GLDISHISQR QETADVKASVLLGSRGLDISHISQRLESLS LLGSRGLDISHISQRLESLSAATTFEPLEP R G L Q R L 0 1 0 1 0 1 0 1 1 2 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1124.5938 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 68 77 NUP93 Nuclear pore complex protein Nup93 yes no 2 2.8608E-05 143.7 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1701 1.0999 5.1833 4 Linear NaN NaN NaN 0 0 Median 1.1644 1.0109 NaN 1 0 Median 1.05 1.1129 NaN 1 0 Median 1.1758 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2174 0.99139 NaN 1 0 Median 27508000 12625000 14883000 0 0 0 2320100 981490 1338600 16692000 7641000 9051200 6762700 3207100 3555600 0 0 0 1732500 795170 937330 11516 3356 11987 58510;58511;58512;58513 58791;58792;58793;58794;58795;58796;58797 58796 7 GLDISNVK SGKSPILVATAVAARGLDISNVKHVINFDL ATAVAARGLDISNVKHVINFDLPSDIEEYV R G L V K H 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 844.46543 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 503 510 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.0035505 89.369 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.0911 0.98315 78.235 4 Linear NaN NaN NaN 0 0 Median 0.91212 0.76384 NaN 1 0 Median 1.1682 1.1788 NaN 1 0 Median 0.22191 0.19074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.816 0.66945 NaN 1 0 Median 35612000 17855000 17758000 0 0 0 11890000 5701800 6188600 12935000 5348800 7586000 1980200 1618300 361910 0 0 0 8807000 5185600 3621400 11517 263 11988 58514;58515;58516;58517 58798;58799;58800 58799 3 GLDKLEENLPILQQPTEK KLEPQIASASEYAHRGLDKLEENLPILQQP KLEENLPILQQPTEKVLADTKELVSSKVSG R G L E K V 0 0 1 1 0 2 3 1 0 1 4 2 0 0 2 0 1 0 0 0 0 0 18 1 2064.1103 O60664;K7EL96;K7ER39 O60664 99 116 PLIN3 Perilipin-3 yes no 3 1.6121E-14 115.73 By matching By MS/MS 1 2 0.70089 0.63408 25.921 3 Median 0.85656 0.82826 NaN 1 0 Median 0.60651 0.55924 17.761 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8354300 4688800 3665500 1673600 774770 898860 6680700 3914000 2766600 0 0 0 0 0 0 0 0 0 0 0 0 11518 1624 11989 58518;58519;58520 58801;58802;58803;58804 58804 4 GLDLEQITSATLMK AKTVNAVVEFFQSNKGLDLEQITSATLMKL KGLDLEQITSATLMKLEEIKERTATGLTHI K G L M K L 1 0 0 1 0 1 1 1 0 1 3 1 1 0 0 1 2 0 0 0 0 0 14 0 1518.7963 Q709C8 Q709C8 653 666 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.0010403 61.353 By MS/MS By MS/MS 1 2 1.011 0.99956 59.753 3 Median 1.011 0.99956 NaN 1 0 Median 0.82236 0.74846 81.135 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4263600 2196400 2067200 2253500 1115600 1137900 2010100 1080800 929300 0 0 0 0 0 0 0 0 0 0 0 0 11519 3205 11990 58521;58522;58523 58805;58806;58807 58805 3 GLDMETDRER LREAGQCFESFLVVRGLDMETDRERLRTIY FLVVRGLDMETDRERLRTIYNRDFKISFGT R G L E R L 0 2 0 2 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 10 1 1220.5455 Q9HCE1 Q9HCE1 25 34 MOV10 Putative helicase MOV-10 yes yes 2;3 0.0097793 72.547 By MS/MS 2 1.6677 1.6078 13.655 2 Median NaN NaN NaN 0 0 Median 1.6677 1.6078 13.655 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3375500 970940 2404600 0 0 0 3375500 970940 2404600 0 0 0 0 0 0 0 0 0 0 0 0 11520 4029 11991 58524;58525 58808;58809 58808 2 GLDNTEFQGK FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ VEAIRGLDNTEFQGKRMHVQLSTSRLRTAP R G L G K R 0 0 1 1 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1107.5197 Q9BQ04;Q9BWF3;E9PB51 Q9BWF3 130 139 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.00053832 117.04 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.2215 1.1065 31.321 6 Median NaN NaN NaN 0 0 Median 1.0191 0.86698 22.635 2 0 Median 1.4664 1.4488 32.98 2 0 Median 1.2639 1.0669 NaN 1 0 Median 1.4255 1.467 NaN 1 0 Median NaN NaN NaN 0 0 Median 22440000 10983000 11457000 0 0 0 6420600 3152500 3268200 10983000 5497400 5485800 1484600 697950 786600 3551100 1634700 1916400 0 0 0 11521 3870;3780 11992 58526;58527;58528;58529;58530;58531 58810;58811;58812 58810 3 GLDNTEFQGKR FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ EAIRGLDNTEFQGKRMHVQLSTSRLRTAPG R G L K R M 0 1 1 1 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1263.6208 Q9BQ04;Q9BWF3;E9PB51 Q9BWF3 130 140 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 3 0.00086332 49.5 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.9986 0.9992 15.979 4 Median 1.2547 1.3383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91455 1.0398 NaN 1 1 Median 1.0904 0.96022 NaN 1 0 Median 0.87959 0.94951 NaN 1 0 Median NaN NaN NaN 0 0 Median 3955900 1786800 2169100 337370 138520 198850 0 0 0 666700 313890 352810 683900 275160 408740 2267900 1059300 1208700 0 0 0 11522 3870;3780 11993 58532;58533;58534;58535 58813;58814;58815;58816 58814 4 GLDPALGSETLASR LEKFRDNCLAILESKGLDPALGSETLASRQ KGLDPALGSETLASRQESTTDHMDSMLLLE K G L S R Q 2 1 0 1 0 0 1 2 0 0 3 0 0 0 1 2 1 0 0 0 0 0 14 0 1385.7151 V9GY01;Q9Y448 V9GY01 147 160 KNSTRN Small kinetochore-associated protein yes no 2 0.00026194 77.062 By MS/MS By MS/MS 1 1 0.65064 0.57937 24.017 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50935 0.48888 NaN 1 1 Median 0.83113 0.68661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7572000 4663900 2908100 0 0 0 0 0 0 6476200 4062500 2413700 1095900 601440 494420 0 0 0 0 0 0 11523 4438 11994 58536;58537 58817;58818 58817 2 GLDPVEILQER LHQKQSRITPIQKPRGLDPVEILQEREYRL QKPRGLDPVEILQEREYRLQARIAHRIQEL R G L E R E 0 1 0 1 0 1 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1267.6772 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8YGP5 P51532 360 370 SMARCA4 Transcription activator BRG1 yes no 2 0.00011336 127.4 By matching By MS/MS By MS/MS By matching By matching 1 4 1 2 1 0.78344 0.85559 17.43 9 Median NaN NaN NaN 0 0 Median 0.62137 0.60975 NaN 1 0 Median 0.78537 0.87015 14.856 4 1 Median 1.1591 1.0172 NaN 1 0 Median 0.68924 0.72836 15.211 2 0 Median 1.0289 0.85559 NaN 1 0 Median 58236000 31359000 26877000 0 0 0 622030 385020 237010 50372000 27335000 23037000 1908600 840910 1067700 4865400 2587400 2278000 467470 210570 256900 11524 366 11995 58538;58539;58540;58541;58542;58543;58544;58545;58546 58819;58820;58821;58822;58823;58824 58821 6 GLDPYNVLAPK QATGLEREIMLAAKKGLDPYNVLAPKGASG AAKKGLDPYNVLAPKGASGTREDPNLVPSI K G L P K G 1 0 1 1 0 0 0 1 0 0 2 1 0 0 2 0 0 0 1 1 0 0 11 0 1185.6394 P10606 P10606 58 68 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2 0.00017753 78.516 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0031 0.82438 38.967 5 Median 0.61084 0.54887 NaN 1 0 Median 1.3455 1.127 44.215 2 0 Median 0.68458 0.65876 NaN 1 0 Median 1.0361 0.84621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116030000 68081000 47949000 84237000 51925000 32312000 24941000 12367000 12574000 6050700 3421300 2629300 799940 366970 432960 0 0 0 0 0 0 11525 1943 11996 58547;58548;58549;58550;58551 58825;58826;58827;58828;58829;58830;58831;58832;58833;58834;58835 58828 11 GLDSFLNR ______________________________ DPKELLKGLDSFLNRDGEVKSVDGISKIFS K G L N R D 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 920.47158 Q96QC0 Q96QC0 14 21 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 0.011256 57.281 By MS/MS By MS/MS 2 4 1.108 0.94504 14.491 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88791 0.88798 3.0784 2 0 Median 1.2451 1.0465 14.831 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7297700 3782800 3515000 0 0 0 0 0 0 5386100 2899800 2486200 1911700 882950 1028700 0 0 0 0 0 0 11526 3718 11997 58552;58553;58554;58555;58556;58557 58836;58837 58836 2 GLDVDSLVIEHIQVNK LLHMLKNAESNAELKGLDVDSLVIEHIQVN LDVDSLVIEHIQVNKAPKMRRRTYRAHGRI K G L N K A 0 0 1 2 0 1 1 1 1 2 2 1 0 0 0 1 0 0 0 3 0 0 16 0 1777.9574 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 106 121 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 3.7408E-05 59.709 By MS/MS By MS/MS By matching By MS/MS 2 2 1 4 1.1166 1.0627 7.5467 9 Median 1.0978 1.0327 4.0524 2 0 Median 1.1117 0.93199 1.1203 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0214 1.1544 NaN 1 0 Median 1.343 1.0861 4.0257 4 0 Median 172170000 74149000 98018000 8367400 3817400 4550000 18343000 8542500 9801000 0 0 0 0 0 0 4215100 2044200 2170900 141240000 59745000 81497000 11527 67 11998 58558;58559;58560;58561;58562;58563;58564;58565;58566 58838;58839;58840;58841;58842 58842 5 GLDVEDVK HGKAPILIATDVASRGLDVEDVKFVINYDY ATDVASRGLDVEDVKFVINYDYPNSSEDYI R G L V K F 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 873.44436 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844 J3KTA4 404 411 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.0029873 102.71 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 3 2 1.2768 1.0966 10.959 13 Median 1.4172 1.3473 NaN 1 0 Median 1.2505 1.0752 6.0868 2 0 Median 1.1032 1.0911 18.213 2 0 Median 1.2918 1.0966 3.128 3 0 Plateau 1.1685 1.116 15.651 3 0 Median 1.2983 1.0634 2.4513 2 0 Median 292820000 136610000 156210000 7163000 2703000 4459900 19669000 7865800 11803000 182710000 88369000 94340000 15365000 6692000 8672800 45379000 21081000 24298000 22534000 9898200 12636000 11528 1334;343 11999 58567;58568;58569;58570;58571;58572;58573;58574;58575;58576;58577;58578;58579 58843;58844;58845;58846;58847;58848;58849;58850;58851;58852;58853;58854 58843 12 GLDVPQVSLIINYDLPNNR SGASRVLISTDVWARGLDVPQVSLIINYDL PQVSLIINYDLPNNRELYIHRIGRSGRYGR R G L N R E 0 1 3 2 0 1 0 1 0 2 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2139.1324 P38919;I3L3H2 P38919 340 358 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 1.137E-07 72.937 By matching By MS/MS 1 1 0.83609 0.78998 0.43845 2 Median NaN NaN NaN 0 0 Median 0.88964 0.78753 NaN 1 0 Median 0.78577 0.79243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3171600 1640500 1531100 0 0 0 506040 266340 239700 2665500 1374100 1291400 0 0 0 0 0 0 0 0 0 11529 2278 12000 58580;58581 58855;58856 58856 2 GLDYFKPWLSSDTK NGLTLPVIQTPDMQRGLDYFKPWLSSDTKQ RGLDYFKPWLSSDTKQPFILVGPEGCGKGM R G L T K Q 0 0 0 2 0 0 0 1 0 0 2 2 0 1 1 2 1 1 1 0 0 0 14 1 1655.8195 Q8NCM8 Q8NCM8 2271 2284 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.0062493 27.649 By MS/MS 1 0.76141 0.82357 NaN 1 Median 0.76141 0.82357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2096500 1310100 786450 2096500 1310100 786450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11530 3418 12001 58582 58857 58857 1 GLEAALVYVENAHVAGK IKKFVTDSNAVVQLKGLEAALVYVENAHVA EAALVYVENAHVAGKTTGEVVSGVVSKVFN K G L G K T 4 0 1 0 0 0 2 2 1 0 2 1 0 0 0 0 0 0 1 3 0 0 17 0 1739.9206 Q14008;E9PQH5 Q14008 68 84 CKAP5 Cytoskeleton-associated protein 5 yes no 2;3 2.0981E-08 97.911 By MS/MS By matching By MS/MS By matching By matching 1 1 4 1 3 1.0224 1.0117 25.94 10 Median 0.97588 0.93866 NaN 1 0 Median 0.62354 0.56863 NaN 1 0 Median 1.0224 1.1196 11.535 4 0 Median 1.1387 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1428 0.97796 30.286 3 0 Median 23860000 11584000 12276000 3251900 1495000 1756800 315580 155880 159700 17523000 8664700 8857900 1917900 902980 1014900 0 0 0 852090 365870 486220 11531 2850 12002 58583;58584;58585;58586;58587;58588;58589;58590;58591;58592 58858;58859;58860;58861;58862;58863;58864;58865 58861 8 GLEAAQIK LTEKEGKDQELAKLRGLEAAQIKELEELRQ QELAKLRGLEAAQIKELEELRQTVKQLKEQ R G L I K E 2 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 828.47052 A0A087WY61;Q14980 Q14980 1071 1078 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.007454 74.415 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.9643 0.99772 8.6235 5 Median NaN NaN NaN 0 0 Median 1.1248 0.99772 NaN 1 1 Median 0.9032 1.0056 NaN 1 0 Median 1.1185 1.0189 NaN 1 0 Median 0.92259 0.96546 NaN 1 0 Median 0.9643 0.82619 NaN 1 0 Median 23235000 12383000 10852000 0 0 0 4594100 2708900 1885300 5889900 3043100 2846800 1145700 510710 634970 8280700 4417600 3863100 3324300 1702800 1621500 11532 2905;77 12003 58593;58594;58595;58596;58597;58598 58866;58867;58868;58869;58870;58871;58872;58873 58868 8 GLEAAQIKELEELR LTEKEGKDQELAKLRGLEAAQIKELEELRQ RGLEAAQIKELEELRQTVKQLKEQLAKKEK R G L L R Q 2 1 0 0 0 1 4 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1597.8675 A0A087WY61;Q14980 Q14980 1071 1084 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 9.4033E-06 135.66 By MS/MS By MS/MS 2 2 0.8622 1.004 12.002 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92704 1.1113 0.56277 2 0 Median NaN NaN NaN 0 0 Median 0.79855 0.90311 1.1684 2 0 Median NaN NaN NaN 0 0 Median 30812000 15695000 15117000 0 0 0 0 0 0 21607000 10836000 10771000 0 0 0 9205600 4859300 4346300 0 0 0 11533 2905;77 12004 58599;58600;58601;58602 58874;58875;58876;58877;58878;58879;58880 58877 7 GLEAAQIKELEELRQTVK LTEKEGKDQELAKLRGLEAAQIKELEELRQ AAQIKELEELRQTVKQLKEQLAKKEKEHAS R G L V K Q 2 1 0 0 0 2 4 1 0 1 3 2 0 0 0 0 1 0 0 1 0 0 18 2 2054.1372 A0A087WY61;Q14980 Q14980 1071 1088 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 3.4598E-08 89.866 By MS/MS By matching 1 1 0.88278 1.1002 10.539 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77293 1.0212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0082 1.1853 NaN 1 0 Median NaN NaN NaN 0 0 Median 10087000 5229300 4858100 0 0 0 0 0 0 7301200 3881500 3419800 0 0 0 2786200 1347800 1438300 0 0 0 11534 2905;77 12005 58603;58604 58881;58882 58881 2 GLEAEVLR EEIFSQNRESEKRLKGLEAEVLRLQEELAA ESEKRLKGLEAEVLRLQEELAASDRARRQA K G L L R L 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 885.49198 Q7Z406;A1L2Z2 Q7Z406 1701 1708 MYH14 Myosin-14 yes no 2 0.0035088 91.906 By matching By MS/MS 1 1 1.1254 1.0842 0.62504 2 Median 0.98005 1.0795 NaN 1 0 Median 1.2922 1.089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2611400 1098500 1512900 466000 214130 251870 2145400 884390 1261000 0 0 0 0 0 0 0 0 0 0 0 0 11535 3242 12006 58605;58606 58883;58884 58884 2 GLEALLADPQQK QGTEPLVLFKEGAVRGLEALLADPQQKIET AVRGLEALLADPQQKIETVISDEEVIKWTK R G L Q K I 2 0 0 1 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 0 1281.6929 Q9H8H0;J3QLQ6;J3QR28 Q9H8H0 131 142 NOL11 Nucleolar protein 11 yes no 2 0.00055381 76.827 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.89321 0.86483 27.257 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78194 0.83124 NaN 1 0 Median 1.7375 1.4649 NaN 1 0 Median 0.89321 0.9227 NaN 1 1 Median 0.9327 0.78362 13.945 2 0 Median 9897500 4939800 4957700 0 0 0 0 0 0 3892100 2044800 1847300 350070 128630 221440 4937800 2391700 2546100 717570 374670 342910 11536 3990 12007 58607;58608;58609;58610;58611 58885;58886;58887 58886 3 GLEDNQGGQYESWNYYR KDEDLRKKYDKYGEKGLEDNQGGQYESWNY EDNQGGQYESWNYYRYDFGIYDDDPEIITL K G L Y R Y 0 1 2 1 0 2 2 3 0 0 1 0 0 0 0 1 0 1 3 0 0 0 17 0 2077.8766 E7EP04;A0A494C1G5;Q8IXB1;Q71S60;A0A087WXH7 E7EP04 103 119 DNAJC10 DnaJ homolog subfamily C member 10 yes no 2 3.1062E-05 52.928 By MS/MS By matching 1 1 1.1154 1.0525 0.3023 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98413 1.0547 NaN 1 0 Median 1.2642 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1784900 816930 967920 0 0 0 0 0 0 1606900 736170 870750 177930 80761 97168 0 0 0 0 0 0 11537 468 12008 58612;58613 58888 58888 1 GLEDTDGDGDSGK GLHQPRLFSTGLAHRGLEDTDGDGDSGKYA HRGLEDTDGDGDSGKYAFPVGLTHHYVPCS R G L G K Y 0 0 0 4 0 0 1 4 0 0 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1264.5055 Q8N8A6 Q8N8A6 460 472 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.033637 26.514 By MS/MS By matching By matching 1 1 1 0.95395 0.98048 8.0374 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91876 0.9789 NaN 1 0 Median 1.2688 1.126 NaN 1 0 Median 0.95395 0.98048 NaN 1 0 Median NaN NaN NaN 0 0 Median 2299200 1145900 1153300 0 0 0 0 0 0 1523400 774030 749380 232050 115360 116700 543710 256540 287170 0 0 0 11538 3394 12009 58614;58615;58616 58889;58890 58889 2 GLEEIPVFDISEK KKALRIYHEQQVKTRGLEEIPVFDISEKTV TRGLEEIPVFDISEKTVNGIENKSLSPDEE R G L E K T 0 0 0 1 0 0 3 1 0 2 1 1 0 1 1 1 0 0 0 1 0 0 13 0 1474.7555 Q5UIP0;H7C2B5 Q5UIP0 2370 2382 RIF1 Telomere-associated protein RIF1 yes no 2 0.00087106 63.283 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.84062 0.86637 5.8493 5 Median 0.87499 0.86637 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78323 0.86415 10.056 2 0 Median 0.90755 0.81647 NaN 1 0 Median 0.84062 0.88444 NaN 1 0 Median NaN NaN NaN 0 0 Median 8413900 4518700 3895300 721690 449190 272490 0 0 0 6097700 3224600 2873000 196870 111750 85118 1397700 733100 664610 0 0 0 11539 3109 12010 58617;58618;58619;58620;58621 58891;58892;58893;58894 58893 4 GLEEPEMDPK NVLGAETVLNQMRMKGLEEPEMDPKSRDLL QMRMKGLEEPEMDPKSRDLLVQQASQCLSK K G L P K S 0 0 0 1 0 0 3 1 0 0 1 1 1 0 2 0 0 0 0 0 0 0 10 0 1143.5118 Q1KMD3;H3BQZ7 Q1KMD3 497 506 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0013144 66.621 By matching By MS/MS By matching 2 3 2 0.80859 0.75227 19.012 7 Median NaN NaN NaN 0 0 Median 0.92814 0.87021 29.957 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65436 0.67073 10.756 3 0 Median 1.0119 0.84857 4.6807 2 0 Median 29751000 16867000 12884000 0 0 0 4107200 1899000 2208200 0 0 0 0 0 0 24157000 14211000 9945600 1486700 756550 730170 11540 3002 12011;12012 58622;58623;58624;58625;58626;58627;58628 58895;58896;58897 58897 1644 3 GLEETVAK TVMQDRREQARQDLKGLEETVAKELQTLHN QARQDLKGLEETVAKELQTLHNLRKLFVQD K G L A K E 1 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 845.44945 P33176 P33176 784 791 KIF5B Kinesin-1 heavy chain yes yes 2 0.0044851 81.297 By MS/MS By MS/MS 1 1 1.1166 1.0262 16.382 2 Median 1.1505 1.1523 NaN 1 0 Median 1.0836 0.91399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21227000 8699100 12528000 1808400 851100 957280 19419000 7848000 11571000 0 0 0 0 0 0 0 0 0 0 0 0 11541 2221 12013 58629;58630 58898;58899;58900;58901 58900 4 GLEEYLEK WPFSLSEQQLDARRRGLEEYLEKVCSIRVI QLDARRRGLEEYLEKVCSIRVIGESDIMQE R G L E K V 0 0 0 0 0 0 3 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 0 979.48623 Q96L92;A0A2R8Y8A7;A0A2R8Y3S6 Q96L92 238 245 SNX27 Sorting nexin-27 yes no 2 0.055593 33.55 By MS/MS By matching By matching 1 1 1 1.4098 1.3613 22.351 3 Median 1.4098 1.3613 NaN 1 0 Median 1.1835 1.06 NaN 1 0 Median 1.6403 1.6557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3512300 1351600 2160700 2153500 839140 1314400 390580 162720 227870 968140 349710 618430 0 0 0 0 0 0 0 0 0 11542 391 12014 58631;58632;58633 58902 58902 1 GLEGERPAR TLRRSRPETGRPRPKGLEGERPARLTRGEA GRPRPKGLEGERPARLTRGEADRDTYRRSA K G L A R L 1 2 0 0 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 9 1 983.51484 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;A0A1W2PQS6;S4R435 P46783 108 116 RPS10;RPS10-NUDT3 40S ribosomal protein S10 no no 2 0.0087128 77.058 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 0.94851 0.94992 12.703 5 Median 0.90626 0.94992 NaN 1 0 Median 0.98515 0.90124 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1113 0.99511 NaN 1 0 Median 0.94851 1.066 NaN 1 0 Median 0.89969 0.76158 NaN 1 0 Median 10293000 5062900 5230600 2304800 1189400 1115400 6918600 3359800 3558800 0 0 0 742930 362600 380330 216680 102520 114160 110470 48584 61888 11543 2346;345 12015 58634;58635;58636;58637;58638 58903;58904 58904 2 GLEGNANSPAHLR GTAGGSSTASYSAGRGLEGNANSPAHLRGP GRGLEGNANSPAHLRGPEQTSGQTAKDPSV R G L L R G 2 1 2 0 0 0 1 2 1 0 2 0 0 0 1 1 0 0 0 0 0 0 13 0 1334.6691 Q8NFC6 Q8NFC6 2494 2506 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2;3 0.0011458 55.567 By MS/MS By MS/MS 2 2 0.77496 0.77902 6.7483 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70363 0.78687 6.3934 2 0 Median 0.87131 0.75718 8.997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4752000 2469200 2282900 0 0 0 0 0 0 3534300 1859300 1675000 1217700 609930 607820 0 0 0 0 0 0 11544 3434 12016 58639;58640;58641;58642 58905;58906;58907;58908 58908 4 GLEGWEK PGLFEEAEKNVQKGKGLEGWEKRLIISDRA EKNVQKGKGLEGWEKRLIISDRAHIVFDFH K G L E K R 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 7 0 817.39702 P30520 P30520 119 125 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.026776 52.683 By MS/MS 1 1.0882 0.93293 NaN 1 Median NaN NaN NaN 0 0 Median 1.0882 0.93293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390400 929900 1460500 0 0 0 2390400 929900 1460500 0 0 0 0 0 0 0 0 0 0 0 0 11545 2195 12017 58643 58909 58909 1 GLEINSKPVLPPINPQR LSGKDTEQIRETLRRGLEINSKPVLPPINP EINSKPVLPPINPQRQNGLAHDRAPSRKDS R G L Q R Q 0 1 2 0 0 1 1 1 0 2 2 1 0 0 4 1 0 0 0 1 0 0 17 1 1871.0629 Q9UMX1 Q9UMX1 315 331 SUFU Suppressor of fused homolog yes yes 3 6.7419E-06 63.709 By MS/MS 1 0.58277 0.6513 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58277 0.6513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4715900 3014200 1701700 0 0 0 0 0 0 4715900 3014200 1701700 0 0 0 0 0 0 0 0 0 11546 4336 12018 58644 58910 58910 1 GLEISGTFTHR YVAPKAVWLPAVKAKGLEISGTFTHRQGHI VKAKGLEISGTFTHRQGHIYMEMNFTNKAL K G L H R Q 0 1 0 0 0 0 1 2 1 1 1 0 0 1 0 1 2 0 0 0 0 0 11 0 1216.62 A0A087X253;P63010 A0A087X253 698 708 AP2B1 AP-2 complex subunit beta yes no 2;3 4.2577E-05 113.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 5 1 1.2174 1.1622 23.907 14 Median 1.1724 1.1306 9.9268 2 0 Median 1.2525 1.0728 15.033 4 2 Median 1.2462 1.3267 8.0654 2 0 Median 1.3279 1.1443 23.682 5 0 Median NaN NaN NaN 0 0 Median 0.67788 0.59987 NaN 1 0 Median 73503000 32170000 41333000 24794000 11787000 13007000 18165000 7034200 11131000 16334000 6661800 9672100 13965000 6551500 7413100 0 0 0 245500 135660 109840 11547 128 12019 58645;58646;58647;58648;58649;58650;58651;58652;58653;58654;58655;58656;58657;58658 58911;58912;58913;58914;58915;58916;58917;58918;58919;58920;58921;58922 58911 12 GLEISGTFTR YVAPKAVWLPAMKAKGLEISGTFTRQVGSI AMKAKGLEISGTFTRQVGSISMDLQLTNKA K G L T R Q 0 1 0 0 0 0 1 2 0 1 1 0 0 1 0 1 2 0 0 0 0 0 10 0 1079.5611 Q10567 Q10567 731 740 AP1B1 AP-1 complex subunit beta-1 yes yes 2 0.0027284 59.245 By MS/MS By MS/MS 3 1 1.7112 1.4571 13.119 3 Median NaN NaN NaN 0 0 Median 1.6259 1.391 18.162 2 2 Median NaN NaN NaN 0 0 Median 1.7112 1.4571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18717000 5399500 13318000 0 0 0 16574000 4553500 12021000 0 0 0 2143200 846000 1297200 0 0 0 0 0 0 11548 2752 12020 58659;58660;58661;58662 58923;58924;58925;58926;58927 58926 5 GLELLAASEAPRDPPGQAKPR ______________________________ ASEAPRDPPGQAKPRGAPVKRPRKTKAIQA R G L P R G 4 2 0 1 0 1 2 2 0 0 3 1 0 0 4 1 0 0 0 0 0 0 21 2 2172.1651 Q86WX3;F8WFE7 Q86WX3 9 29 RPS19BP1 Active regulator of SIRT1 yes no 3 0.0003524 29.766 By MS/MS By matching 1 1 0.46082 0.47088 7.3918 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41376 0.49615 NaN 1 0 Median 0.51323 0.4469 NaN 1 0 Median 10085000 7108600 2976100 0 0 0 0 0 0 0 0 0 0 0 0 9865500 6974800 2890700 219230 133850 85378 11549 3297 12021 58663;58664 58928;58929 58928 2 GLELLENSLLR IEVFLQRTEESVISKGLELLENSLLRIEDN VISKGLELLENSLLRIEDNSLLYQYLEIKS K G L L R I 0 1 1 0 0 0 2 1 0 0 5 0 0 0 0 1 0 0 0 0 0 0 11 0 1255.7136 Q92990;M0QX84;M0QXG8 Q92990 335 345 GLMN Glomulin yes no 2 0.001697 57.598 By MS/MS 1 1.0186 0.99026 NaN 1 Median 1.0186 0.99026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5059200 2401300 2657800 5059200 2401300 2657800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11550 3572 12022 58665 58930;58931 58931 2 GLEPSPAAVAALPPEVR ______________________________ EPSPAAVAALPPEVRAQLAELELELSEGDI R G L V R A 4 1 0 0 0 0 2 1 0 0 2 0 0 0 4 1 0 0 0 2 0 0 17 0 1672.9148 Q9P265 Q9P265 5 21 DIP2B Disco-interacting protein 2 homolog B yes yes 2 1.9562E-11 93.959 By MS/MS 1 0.50234 0.54289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50234 0.54289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4380400 2209400 2171000 0 0 0 0 0 0 4380400 2209400 2171000 0 0 0 0 0 0 0 0 0 11551 4215 12023 58666 58932 58932 1 GLESDVAELR HRSEVELAAALSDKRGLESDVAELRAQLAK LSDKRGLESDVAELRAQLAKAEDGHAVAKK R G L L R A 1 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.551 Q03252 Q03252 172 181 LMNB2 Lamin-B2 yes yes 2 0.00033784 120.15 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 4 2 1.0688 1.0718 58.506 13 Median 1.1404 1.1574 NaN 1 0 Median 0.82337 0.73434 NaN 1 0 Median 1.0138 1.0188 7.6679 2 0 Median 1.5053 1.2717 14.772 3 0 Median 0.8336 0.83996 87.464 4 1 Median 1.3937 1.1593 11.098 2 0 Median 304520000 170360000 134160000 1223200 472880 750320 179040 62458 116590 43600000 20127000 23473000 18874000 6931500 11943000 217530000 133600000 83928000 23115000 9170400 13945000 11552 2709 12024 58667;58668;58669;58670;58671;58672;58673;58674;58675;58676;58677;58678;58679 58933;58934;58935;58936;58937;58938;58939;58940;58941;58942;58943;58944;58945;58946;58947;58948;58949 58937 17 GLESLPPLRPQQNPVLPVAGER LSEEEIAMAVTAWEKGLESLPPLRPQQNPV LRPQQNPVLPVAGERNVLITSALPYVNNVP K G L E R N 1 2 1 0 0 2 2 2 0 0 4 0 0 0 5 1 0 0 0 2 0 0 22 1 2366.307 P56192 P56192 243 264 MARS Methionine--tRNA ligase, cytoplasmic yes yes 3 1.9524E-12 72.086 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 2 1 0.45689 0.48522 15.307 7 Median 0.44478 0.47472 9.4777 2 0 Median 0.57681 0.57068 NaN 1 0 Median 0.44008 0.5085 NaN 1 0 Median 0.48603 0.45269 9.814 2 0 Median 0.32862 0.35705 NaN 1 0 Median NaN NaN NaN 0 0 Median 43229000 28407000 14822000 28342000 18656000 9685700 1919000 1143200 775850 8568100 5678000 2890100 1746600 1158200 588440 2653400 1771200 882170 0 0 0 11553 2508 12025 58680;58681;58682;58683;58684;58685;58686 58950;58951;58952;58953;58954;58955 58951 6 GLESTTLADKDGEIYCK KSWHKACFRCAKCGKGLESTTLADKDGEIY ESTTLADKDGEIYCKGCYAKNFGPKGFGFG K G L C K G 1 0 0 2 1 0 2 2 0 1 2 2 0 0 0 1 2 0 1 0 0 0 17 1 1898.8932 E9PP21;P21291;E9PND2 E9PP21 119 135 CSRP1 Cysteine and glycine-rich protein 1 yes no 3 2.4955E-06 69.331 By MS/MS 2 1.0339 0.9448 3.5632 2 Median NaN NaN NaN 0 0 Median 1.0339 0.9448 3.5632 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10998000 5425100 5572700 0 0 0 10998000 5425100 5572700 0 0 0 0 0 0 0 0 0 0 0 0 11554 977 12026 58687;58688 58956;58957 58956 2 GLETFSQLVWK DQCLLLSETVWGALRGLETFSQLVWKSAEG GALRGLETFSQLVWKSAEGTFFINKTEIED R G L W K S 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 1 1 0 1 0 0 11 0 1306.6921 H3BS10;H3BP20;P06865;H3BU85;H3BTD4 H3BS10 138 148 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.00017515 78.934 By matching By MS/MS 1 1 1.2843 1.1534 29.083 2 Median 0.993 0.93898 NaN 1 0 Median 1.661 1.4167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8301800 3509600 4792200 4676600 2271300 2405300 3625200 1238300 2386800 0 0 0 0 0 0 0 0 0 0 0 0 11555 1218 12027 58689;58690 58958 58958 1 GLETHLIALK TGLQTLISNVVDHIKGLETHLIALKLEELI VDHIKGLETHLIALKLEELILEDTSLSPEE K G L L K L 1 0 0 0 0 0 1 1 1 1 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1093.6495 Q14CX7 Q14CX7 910 919 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.00047826 91.069 By matching By MS/MS 1 1 1.6635 1.4254 15.276 2 Median NaN NaN NaN 0 0 Median 1.8517 1.5879 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4945 1.2794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3802400 1623400 2178900 0 0 0 932040 385340 546700 0 0 0 2870300 1238100 1632200 0 0 0 0 0 0 11556 2908 12028 58691;58692 58959;58960 58960 2 GLEVTAYSPLGSSDR PYLAQNELIAHCQARGLEVTAYSPLGSSDR GLEVTAYSPLGSSDRAWRDPDEPVLLEEPV R G L D R A 1 1 0 1 0 0 1 2 0 0 2 0 0 0 1 3 1 0 1 1 0 0 15 0 1550.7577 P14550 P14550 204 218 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 2 0.00488 48.741 By MS/MS 1 1.4384 1.3681 NaN 1 Median 1.4384 1.3681 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4363700 1582300 2781400 4363700 1582300 2781400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11557 2004 12029 58693 58961 58961 1 GLEVTDDSPK LIMLDIYAIEELRARGLEVTDDSPKYNYHL ELRARGLEVTDDSPKYNYHLDSSGSYVFEN R G L P K Y 0 0 0 2 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 P49588 P49588 477 486 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.00035174 122.52 By MS/MS By MS/MS 1 2 1.0438 0.87856 13.506 3 Median 0.79036 0.76575 NaN 1 0 Median 1.0868 0.93882 9.3819 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39065000 19745000 19320000 9528600 5101600 4427100 29536000 14643000 14893000 0 0 0 0 0 0 0 0 0 0 0 0 11558 2385 12030 58694;58695;58696 58962;58963;58964;58965;58966 58963 5 GLEWLWSPQIVGLYNR AADALTFAEVSKDPKGLEWLWSPQIVGLYN LEWLWSPQIVGLYNRLLQRCELNRHTTEAA K G L N R L 0 1 1 0 0 1 1 2 0 1 3 0 0 0 1 1 0 2 1 1 0 0 16 0 1930.0101 Q9Y446 Q9Y446 598 613 PKP3 Plakophilin-3 yes yes 2 0.021004 39.917 By MS/MS 1 0.6673 0.70416 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6673 0.70416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1183800 731340 452480 0 0 0 0 0 0 1183800 731340 452480 0 0 0 0 0 0 0 0 0 11559 4437 12031 58697 58967 58967 1 GLEYLHFMR LTEDEIATILQSTLKGLEYLHFMRKIHRDI LQSTLKGLEYLHFMRKIHRDIKAGNILLNT K G L M R K 0 1 0 0 0 0 1 1 1 0 2 0 1 1 0 0 0 0 1 0 0 0 9 0 1164.575 Q13043;A0A087WVN8;Q13188 Q13043 136 144 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit yes no 2 0.008607 66.682 By MS/MS 1 1.1943 1.1836 NaN 1 Median 1.1943 1.1836 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036100 1768200 2267900 4036100 1768200 2267900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11560 2780 12032 58698 58968 58968 1 GLFAQLIR ARLVFREEGYLAFYRGLFAQLIRQIPNTAI GYLAFYRGLFAQLIRQIPNTAIVLSTYELI R G L I R Q 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 916.54944 Q9BSK2 Q9BSK2 290 297 SLC25A33 Solute carrier family 25 member 33 yes yes 2 0.024981 43 By MS/MS By matching 1 1 1.2288 1.1135 18.671 2 Median 1.3089 1.2707 NaN 1 0 Median 1.1537 0.9758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3309400 1292200 2017300 1789200 592100 1197100 1520200 700060 820150 0 0 0 0 0 0 0 0 0 0 0 0 11561 3817 12033 58699;58700 58969 58969 1 GLFDEYGSK VTFKSILFVPTSAPRGLFDEYGSKKSDYIK PTSAPRGLFDEYGSKKSDYIKLYVRRVFIT R G L S K K 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1014.4658 P14625;Q58FF3 P14625 396 404 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.00063785 107.9 By MS/MS By MS/MS By matching By matching By MS/MS 4 4 1 1 1 1.3208 1.1727 22.738 11 Median 1.058 1.0145 8.2652 4 0 Median 1.391 1.219 6.1699 4 0 Median 1.0748 1.1814 NaN 1 0 Median 1.5357 1.3628 NaN 1 0 Median 2.0925 2.1568 NaN 1 0 Median NaN NaN NaN 0 0 Median 117480000 53123000 64353000 76576000 35740000 40836000 35060000 14930000 20130000 3559100 1614200 1944900 233170 88962 144210 2049200 750650 1298600 0 0 0 11562 2006 12034 58701;58702;58703;58704;58705;58706;58707;58708;58709;58710;58711 58970;58971;58972;58973;58974;58975;58976 58971 7 GLFDEYGSKK VTFKSILFVPTSAPRGLFDEYGSKKSDYIK TSAPRGLFDEYGSKKSDYIKLYVRRVFITD R G L K K S 0 0 0 1 0 0 1 2 0 0 1 2 0 1 0 1 0 0 1 0 0 0 10 1 1142.5608 P14625;Q58FF3 P14625 396 405 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.00057885 76.827 By MS/MS By MS/MS 1 1 1.0935 1.0993 26.696 2 Median 0.87109 0.91018 NaN 1 0 Median 1.3726 1.3277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19733000 10972000 8761400 17413000 9918200 7494600 2320400 1053600 1266800 0 0 0 0 0 0 0 0 0 0 0 0 11563 2006 12035 58712;58713 58977;58978 58977 2 GLFEEAAK TKPIINKVASVAENKGLFEEAAKLYDLAKN ASVAENKGLFEEAAKLYDLAKNADKVLELM K G L A K L 2 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 863.43888 Q8N1F7;H3BVG0;H3BVE2 Q8N1F7 620 627 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0062263 72.138 By MS/MS By MS/MS By matching 1 2 1 1.0923 0.99897 10.111 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98563 1.0746 NaN 1 1 Median 1.1799 1.0136 12.378 2 0 Median NaN NaN NaN 0 0 Median 1.0929 0.90574 NaN 1 0 Median 14592000 7136200 7455700 0 0 0 0 0 0 11856000 5945900 5910300 2294200 989190 1305000 0 0 0 441360 201040 240320 11564 3356 12036 58714;58715;58716;58717 58979;58980 58980 2 GLFEVNPWKR RAGPNGTLFVADAYKGLFEVNPWKREVKLL ADAYKGLFEVNPWKREVKLLLSSETPIEGK K G L K R E 0 1 1 0 0 0 1 1 0 0 1 1 0 1 1 0 0 1 0 1 0 0 10 1 1244.6666 Q9HDC9;H0Y512 Q9HDC9 171 180 APMAP Adipocyte plasma membrane-associated protein yes no 3 0.0024183 44.309 By MS/MS 1 1.1656 1.1736 NaN 1 Median 1.1656 1.1736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2341400 948130 1393300 2341400 948130 1393300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11565 4039 12037 58718 58981;58982 58981 2 GLFIIDDK QDYGVLKADEGISFRGLFIIDDKGILRQIT DEGISFRGLFIIDDKGILRQITVNDLPVGR R G L D K G 0 0 0 2 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 919.50148 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830 129 136 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 1;2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 8 1 1 4 1.2395 1.0965 15.231 17 Median 1.1965 1.1262 11.794 3 0 Median 1.2034 1.0107 19.078 8 0 Median 1.4819 1.3903 NaN 1 0 Median 1.3474 1.1131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3099 1.1044 7.9387 4 0 Median 487590000 210540000 277050000 321540000 140950000 180590000 105150000 44959000 60191000 53335000 21420000 31915000 1118300 496460 621870 0 0 0 6440100 2713900 3726200 11566 2728;2793 12038 58719;58720;58721;58722;58723;58724;58725;58726;58727;58728;58729;58730;58731;58732;58733;58734;58735 58983;58984;58985;58986;58987;58988;58989;58990;58991;58992;58993;58994;58995;58996;58997 58985 15 GLFIIDDKGILR QDYGVLKADEGISFRGLFIIDDKGILRQIT SFRGLFIIDDKGILRQITVNDLPVGRSVDE R G L L R Q 0 1 0 2 0 0 0 2 0 3 2 1 0 1 0 0 0 0 0 0 0 0 12 1 1358.7922 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830 129 140 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 2;3 1.1571E-05 159.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 4 1 4 2 1.4034 1.3842 27.269 22 Median 1.3935 1.3842 3.4435 6 0 Median 1.2547 1.1386 30.055 5 0 Median 1.4549 1.5256 17.221 4 0 Median 1.4007 1.2399 NaN 1 0 Median 1.7806 1.9411 11.078 4 0 Median 1.6265 1.3975 11.729 2 0 Median 1354500000 574210000 780260000 996390000 424110000 572270000 318970000 134960000 184010000 25031000 9893700 15137000 1165800 479280 686470 12696000 4668900 8026800 218400 89378 129020 11567 2728;2793 12039 58736;58737;58738;58739;58740;58741;58742;58743;58744;58745;58746;58747;58748;58749;58750;58751;58752;58753;58754;58755;58756;58757 58998;58999;59000;59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029;59030;59031;59032;59033;59034 59006 37 GLFIIDGK EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT DEGIAYRGLFIIDGKGVLRQITVNDLPVGR R G L G K G 0 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 861.496 P32119 P32119 128 135 PRDX2 Peroxiredoxin-2 yes yes 2 0.0034744 94.006 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 2 2 1 1.1077 0.97896 18.486 13 Median 0.94911 0.93023 24.448 5 0 Median 1.3011 1.0821 5.5673 3 0 Plateau 1.0967 1.0864 17.322 2 0 Median 1.1567 0.98622 0.5114 2 0 Median 0.77813 0.91518 NaN 1 0 Median NaN NaN NaN 0 0 Median 272270000 129530000 142740000 208100000 101080000 107020000 34319000 14330000 19989000 28160000 13289000 14870000 899400 396310 503090 792970 433100 359870 0 0 0 11568 2215 12040 58758;58759;58760;58761;58762;58763;58764;58765;58766;58767;58768;58769;58770 59035;59036;59037;59038;59039;59040;59041;59042;59043;59044;59045;59046;59047;59048;59049 59036 15 GLFIIDGKGVLR EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT AYRGLFIIDGKGVLRQITVNDLPVGRSVDE R G L L R Q 0 1 0 1 0 0 0 3 0 2 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1286.7711 P32119 P32119 128 139 PRDX2 Peroxiredoxin-2 yes yes 2 0.0029417 66.435 By MS/MS By matching 1 1 1.1355 1.1306 15.494 2 Median 0.96913 1.0132 NaN 1 0 Median 1.3305 1.2615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9950700 4967200 4983500 9622300 4809100 4813200 328370 158060 170310 0 0 0 0 0 0 0 0 0 0 0 0 11569 2215 12041 58771;58772 59050 59050 1 GLFIIDPNGVIK RDYGVLLEGSGLALRGLFIIDPNGVIKHLS ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE R G L I K H 0 0 1 1 0 0 0 2 0 3 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1284.7442 P30048 P30048 185 196 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 4.5074E-06 113.71 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 3 1 1 1 1 1.276 1.0949 26.053 9 Median 0.86508 0.80608 1.8126 2 0 Median 1.276 1.0949 4.4395 3 0 Median 0.94004 0.95224 NaN 1 0 Median 1.487 1.2295 NaN 1 0 Median 1.4985 1.5374 NaN 1 0 Median 2.1478 1.7232 NaN 1 0 Median 65545000 29222000 36322000 15553000 7924800 7628500 37541000 15628000 21913000 6593100 3355200 3237900 1380000 517140 862890 4239800 1725500 2514300 236900 71278 165620 11570 2183 12042 58773;58774;58775;58776;58777;58778;58779;58780;58781 59051;59052;59053;59054;59055 59053 5 GLFITIHDR GLACQQYSLVFRKPRGLFITIHDRGHIASV VFRKPRGLFITIHDRGHIASVLNAWPEDVI R G L D R G 0 1 0 1 0 0 0 1 1 2 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1070.5873 P48163 P48163 122 130 ME1 NADP-dependent malic enzyme yes yes 2 0.0008527 94.302 By MS/MS By MS/MS 1 1 1.3291 1.2102 13.529 2 Median 1.3922 1.3317 NaN 1 0 Median 1.269 1.0998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11144000 4555200 6588800 8647400 3417600 5229800 2496500 1137600 1358900 0 0 0 0 0 0 0 0 0 0 0 0 11571 2359 12043 58782;58783 59056;59057;59058;59059 59056 4 GLFMNSEFLPVVK SSRSHQERLQNHPKRGLFMNSEFLPVVKCT KRGLFMNSEFLPVVKCTIDNTLDQWLQVGG R G L V K C 0 0 1 0 0 0 1 1 0 0 2 1 1 2 1 1 0 0 0 2 0 0 13 0 1479.7796 Q9H1A4;H0Y564;A0A2R8YF63 Q9H1A4 1837 1849 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.064144 37.476 By MS/MS 1 1.0454 1.165 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0454 1.165 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2440300 1184500 1255800 0 0 0 0 0 0 2440300 1184500 1255800 0 0 0 0 0 0 0 0 0 11572 3933 12044 58784 59060 59060 1 GLFPFTHVK MNINGQWEGEVNGRKGLFPFTHVKIFDPQN EVNGRKGLFPFTHVKIFDPQNPDENE____ K G L V K I 0 0 0 0 0 0 0 1 1 0 1 1 0 2 1 0 1 0 0 1 0 0 9 0 1044.5757 P46109 P46109 284 292 CRKL Crk-like protein yes yes 2 0.072823 26.384 By MS/MS By matching 2 1 0.69886 0.6561 36.493 3 Median 0.80482 0.76261 21.274 2 0 Median 0.51564 0.42874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11565000 5872000 5692600 8597200 3909800 4687400 2967400 1962200 1005100 0 0 0 0 0 0 0 0 0 0 0 0 11573 2341 12045 58785;58786;58787 59061 59061 1 GLFSFFQGR PVSSHCLRAAAFYVRGLFSFFQGRYNEAKR AAFYVRGLFSFFQGRYNEAKRFLRETLKMS R G L G R Y 0 1 0 0 0 1 0 2 0 0 1 0 0 3 0 1 0 0 0 0 0 0 9 0 1057.5345 Q9Y6X3 Q9Y6X3 466 474 MAU2 MAU2 chromatid cohesion factor homolog yes yes 2 0.006571 54.157 By matching By MS/MS By matching By matching 1 1 1 4 1.1578 1.0757 41.799 7 Median NaN NaN NaN 0 0 Median 1.2062 1.0757 NaN 1 0 Median 1.812 1.9083 NaN 1 0 Median 1.6156 1.4283 NaN 1 0 Median 0.98927 1.0135 39.911 4 0 Median NaN NaN NaN 0 0 Median 4874300 2251900 2622500 0 0 0 174320 78710 95611 1803800 746010 1057800 80639 28522 52117 2815500 1398600 1416900 0 0 0 11574 4499 12046 58788;58789;58790;58791;58792;58793;58794 59062;59063 59062 2 GLFTGLTPR LFSYAQHIASIDGRRGLFTGLTPRLCSGVL SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL R G L P R L 0 1 0 0 0 0 0 2 0 0 2 0 0 1 1 0 2 0 0 0 0 0 9 0 960.53927 Q9Y6C9;E9PIE4 Q9Y6C9 69 77 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.00046698 123.69 By MS/MS By matching By matching By matching By MS/MS By matching 2 1 1 1 1 2 1.121 0.97162 18.83 8 Median 0.99207 0.93177 4.0511 2 0 Median 1.2141 1.0326 NaN 1 0 Median 1.0955 1.0232 NaN 1 0 Median 1.161 0.97484 NaN 1 0 Median 1.6269 1.601 NaN 1 0 Median 1.1153 0.92251 6.8683 2 0 Median 58678000 27812000 30866000 51261000 24703000 26558000 1298000 567370 730660 1037100 524270 512850 492790 230520 262270 2325000 759250 1565700 2264500 1028200 1236400 11575 4488 12047 58795;58796;58797;58798;58799;58800;58801;58802 59064;59065;59066;59067;59068 59065 5 GLGAFVIDSDHLGHR GISGSGKSSIAQRLKGLGAFVIDSDHLGHR GLGAFVIDSDHLGHRAYAPGGPAYQPVVEA K G L H R A 1 1 0 2 0 0 0 3 2 1 2 0 0 1 0 1 0 0 0 1 0 0 15 0 1592.8059 Q13057;K7EQ60 Q13057 380 394 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 3 4.6275E-05 76.262 By MS/MS 1 1.3874 1.3297 NaN 1 Median 1.3874 1.3297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7907400 2927000 4980400 7907400 2927000 4980400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11576 2783 12048 58803 59069;59070 59069 2 GLGAGAGAGEESPATSLPR VLLGAYRLWVRWGRRGLGAGAGAGEESPAT GAGAGEESPATSLPRMKKRDFSLEQLRQYD R G L P R M 4 1 0 0 0 0 2 5 0 0 2 0 0 0 2 2 1 0 0 0 0 0 19 0 1696.838 O15173 O15173 79 97 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 2 3.5199E-18 147.26 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.96153 0.87064 42.187 6 Median 0.78668 0.75535 14.93 2 0 Median 1.1047 0.92524 3.4415 2 0 Median 0.76689 0.73332 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.247 2.1847 NaN 1 0 Median NaN NaN NaN 0 0 Median 74169000 39950000 34219000 55970000 31499000 24471000 13235000 6096100 7139000 4062500 2040100 2022400 0 0 0 901600 315420 586180 0 0 0 11577 1529 12049 58804;58805;58806;58807;58808;58809 59071;59072;59073;59074;59075;59076;59077;59078;59079;59080;59081 59071 11 GLGATFILR KISQFLGICIQRSGRGLGATFILRNVIEGQ IQRSGRGLGATFILRNVIEGQGVEICFELY R G L L R N 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 946.56 P49406;S4R3W9;A0A0A0MRF4 P49406 144 152 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.00097881 87.323 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1.3704 1.2439 10.358 6 Median 1.1429 1.0675 NaN 1 0 Median 1.5264 1.2983 3.7761 2 0 Median 1.27 1.224 NaN 1 0 Median 1.7501 1.4188 NaN 1 0 Median 1.1673 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median 13207000 5924000 7283000 8416100 3812700 4603400 1914400 735720 1178600 1651100 702840 948280 88268 28780 59488 1137200 643960 493190 0 0 0 11578 2380 12050 58810;58811;58812;58813;58814;58815 59082;59083;59084;59085 59082 4 GLGATLLR TRDLLRSRGIAGLYKGLGATLLRDVPFSVV GIAGLYKGLGATLLRDVPFSVVYFPLFANL K G L L R D 1 1 0 0 0 0 0 2 0 0 3 0 0 0 0 0 1 0 0 0 0 0 8 0 799.49159 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;E9PS95;Q9H1K4 Q9H936 189 196 SLC25A22;SLC25A18 Mitochondrial glutamate carrier 1;Mitochondrial glutamate carrier 2 yes no 2 0.0021811 139.92 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.7167 1.6143 19.666 4 Median 1.3243 1.24 NaN 1 0 Median 1.8126 1.518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6259 1.7167 NaN 1 0 Median 2.2361 1.9713 NaN 1 0 Median 18628000 7408900 11219000 14296000 5855200 8441300 3010800 1037400 1973400 0 0 0 0 0 0 1024900 421430 603470 295800 94905 200900 11579 943 12051 58816;58817;58818;58819 59086;59087;59088 59086 3 GLGATTHPTAAVK TLLEISKRFRKEMEKGLGATTHPTAAVKML EKGLGATTHPTAAVKMLPTFVRSTPDGTEH K G L V K M 3 0 0 0 0 0 0 2 1 0 1 1 0 0 1 0 3 0 0 1 0 0 13 0 1222.667 E9PB90;P52789 E9PB90 22 34 HK2 Hexokinase;Hexokinase-2 yes no 2 0.02218 29.774 By MS/MS 1 0.82337 0.73485 NaN 1 Median NaN NaN NaN 0 0 Median 0.82337 0.73485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1212300 656840 555480 0 0 0 1212300 656840 555480 0 0 0 0 0 0 0 0 0 0 0 0 11580 908 12052 58820 59089 59089 1 GLGDCLVK LAADVGKSGTEREFRGLGDCLVKITKSDGI GTEREFRGLGDCLVKITKSDGIRGLYQGFS R G L V K I 0 0 0 1 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 860.44259 P05141;P12236 P12236 156 163 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.010382 58.981 By MS/MS By matching By matching 4 1 1 1.5451 1.3398 46.798 6 Median NaN NaN NaN 0 0 Median 1.5451 1.3398 54.543 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2073 1.2877 NaN 1 0 Median 1.8402 1.6643 NaN 1 0 Median 97965000 38534000 59430000 0 0 0 94748000 37406000 57342000 0 0 0 0 0 0 2090200 715130 1375000 1126500 412880 713660 11581 1977;1861 12053 58821;58822;58823;58824;58825;58826 59090;59091;59092;59093 59091 4 GLGEISAASEFK PETTYAVRLAALNGKGLGEISAASEFKTQP NGKGLGEISAASEFKTQPVREPSAPKLEGQ K G L F K T 2 0 0 0 0 0 2 2 0 1 1 1 0 1 0 2 0 0 0 0 0 0 12 0 1207.6085 A0A0D9SF98;A0A087WWJ5;A0A087WTF6;A0A087WX77;A0A087WWD4;A0A087WV75;P13591;A0A087X1V2;A0A087WVU1;H7BYX6;A0A087WTE4;A0A0C4DGS4 A0A0D9SF98 93 104 NCAM1 Neural cell adhesion molecule 1 yes no 2 7.8145E-05 93.111 By MS/MS By matching 1 1 1.1987 1.096 16.37 2 Median 1.0091 0.97619 NaN 1 0 Median 1.4239 1.2305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15514000 7640900 7872700 11974000 6114300 5859400 3539900 1526600 2013300 0 0 0 0 0 0 0 0 0 0 0 0 11582 17 12054 58827;58828 59094 59094 1 GLGGEVPGSHQGPDPYR TTAAMWALQTVEKERGLGGEVPGSHQGPDP GGEVPGSHQGPDPYRQLREKDPKYSALRQN R G L Y R Q 0 1 0 1 0 1 1 5 1 0 1 0 0 0 3 1 0 0 1 1 0 0 17 0 1721.8121 K7ELQ9;Q6UW68;K7EM09;K7EPR0 K7ELQ9 125 141 TMEM205 Transmembrane protein 205 yes no 2;3 3.6976E-13 143.42 By MS/MS By MS/MS By MS/MS 4 3 2 0.60035 0.58311 16.94 9 Median 0.55693 0.53041 7.9536 4 0 Median 0.82229 0.65804 5.6309 3 0 Median 0.6372 0.67924 29.039 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 262490000 152870000 109620000 92307000 57575000 34733000 152910000 83977000 68932000 17273000 11314000 5959400 0 0 0 0 0 0 0 0 0 11583 1379 12055 58829;58830;58831;58832;58833;58834;58835;58836;58837 59095;59096;59097;59098;59099;59100;59101;59102;59103;59104;59105;59106;59107;59108;59109;59110 59108 16 GLGGLIVVSK EAADLSLGYMKSRVKGLGGLIVVSKTGDWV KSRVKGLGGLIVVSKTGDWVAKWTSTSMPW K G L S K T 0 0 0 0 0 0 0 3 0 1 2 1 0 0 0 1 0 0 0 2 0 0 10 0 941.59097 Q7L266 Q7L266 261 270 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes yes 2 0.0066695 48.794 By MS/MS By MS/MS 1 1 1.1521 1.064 NaN 1 Median 1.1521 1.064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2664300 1200100 1464100 2664300 1200100 1464100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11584 3220 12056 58838;58839 59111;59112;59113 59112 3 GLGGQLMR LKQIHQQLYDRQLYRGLGGQLMRQAVCVLI YDRQLYRGLGGQLMRQAVCVLIEKLSLSKM R G L M R Q 0 1 0 0 0 1 0 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 830.44326 Q9BTW9;J3KR97;I3L439;I3L0V3;I3L163;I3L143;I3L131;I3L500;I3L3H4;I3L1S3 Q9BTW9 670 677 TBCD Tubulin-specific chaperone D yes no 2 0.054712 33.738 By MS/MS 1 0.79164 0.78588 NaN 1 Median 0.79164 0.78588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807700 999860 807880 1807700 999860 807880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11585 1324 12057 58840 59114 59114 1 GLGGSGGAGGPPGTPYELAK ADGLVGEDGAADASKGLGGSGGAGGPPGTP GGAGGPPGTPYELAKEDPQRYHLQSVIRTS K G L A K E 2 0 0 0 0 0 1 8 0 0 2 1 0 0 3 1 1 0 1 0 0 0 20 0 1741.8635 Q9ULL5 Q9ULL5 673 692 PRR12 Proline-rich protein 12 yes yes 2 1.6894E-05 47.189 By MS/MS By matching 1 1 0.69686 0.69871 4.6604 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65433 0.72212 NaN 1 0 Median 0.74217 0.67606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12627000 7207700 5419500 0 0 0 0 0 0 11551000 6607300 4944000 1076000 600420 475570 0 0 0 0 0 0 11586 4325 12058 58841;58842 59115;59116 59116 2 GLGGSGGAGGPPGTPYELAKEDPQR ADGLVGEDGAADASKGLGGSGGAGGPPGTP PPGTPYELAKEDPQRYHLQSVIRTSASLDE K G L Q R Y 2 1 0 1 0 1 2 8 0 0 2 1 0 0 4 1 1 0 1 0 0 0 25 1 2367.1455 Q9ULL5 Q9ULL5 673 697 PRR12 Proline-rich protein 12 yes yes 3 3.0396E-08 42.454 By MS/MS 1 0.36562 0.4384 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36562 0.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6869300 4444900 2424400 0 0 0 0 0 0 6869300 4444900 2424400 0 0 0 0 0 0 0 0 0 11587 4325 12059 58843 59117 59117 1 GLGHPPSSPLLK AVNKAIKSPPGFSAKGLGHPPSSPLLKKTP SAKGLGHPPSSPLLKKTPLALAGSPTPKNP K G L L K K 0 0 0 0 0 0 0 2 1 0 3 1 0 0 3 2 0 0 0 0 0 0 12 0 1201.6819 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 157 168 WIZ Protein Wiz yes no 2;3 0.0046989 45.137 By MS/MS By matching 3 1 0.65447 0.5504 18.09 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60469 0.64212 22.274 2 0 Median 0.65447 0.5504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10167000 7798000 2369300 0 0 0 0 0 0 8692500 7090100 1602400 1474700 707900 766840 0 0 0 0 0 0 11588 656 12060 58844;58845;58846;58847 59118;59119;59120 59118 3 GLGHQVATDALVAMEK DHKGQVCVMIHSGSRGLGHQVATDALVAME LGHQVATDALVAMEKAMKRDKIIVNDRQLA R G L E K A 3 0 0 1 0 1 1 2 1 0 2 1 1 0 0 0 1 0 0 2 0 0 16 0 1638.8399 Q9Y3I0 Q9Y3I0 264 279 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 2.4613E-10 123.64 By MS/MS By matching By MS/MS By MS/MS 2 2 5 4 1.1434 1.0246 27.825 13 Median 1.0231 0.94649 9.4259 2 0 Median 1.1528 1.001 3.2929 2 0 Median 1.0615 1.0343 44.636 5 0 Median 1.2901 1.1134 6.8969 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161540000 73725000 87819000 31011000 13875000 17136000 3280800 1863900 1416900 100720000 46334000 54391000 26528000 11653000 14875000 0 0 0 0 0 0 11589 4430 12061;12062 58848;58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860 59121;59122;59123;59124;59125;59126;59127;59128;59129;59130;59131;59132;59133 59127 1977 13 GLGILSLK AERKGAAYGLAGLVKGLGILSLKQQEMMAA GLAGLVKGLGILSLKQQEMMAALTDAIQDK K G L L K Q 0 0 0 0 0 0 0 2 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 799.51674 Q92616 Q92616 1407 1414 GCN1L1 Translational activator GCN1 yes yes 2 0.010382 58.981 By MS/MS By matching By matching 1 1 1 1.3559 1.2125 14.137 3 Median 1.2647 1.2125 NaN 1 0 Median 1.3559 1.1918 NaN 1 0 Median 1.3859 1.535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4690000 1984500 2705600 3049000 1356800 1692100 1119000 450720 668280 522070 176910 345160 0 0 0 0 0 0 0 0 0 11590 3544 12063 58861;58862;58863 59134;59135 59134 2 GLGLDDALEPR DVTRIERIGAHSHIRGLGLDDALEPRQASQ SHIRGLGLDDALEPRQASQGMVGQLAARRA R G L P R Q 1 1 0 2 0 0 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1154.5932 Q9Y230;X6R2L4;M0R0Z0;A0A1W2PS48 Q9Y230 30 40 RUVBL2 RuvB-like 2 yes no 2 0.00018718 107.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 1 2 0.95381 0.88944 14.996 11 Median 0.95381 0.91246 NaN 1 0 Median 1.1116 0.94757 3.0722 2 0 Median 0.82371 0.80633 5.4377 3 0 Median 1.0397 0.89712 1.2153 2 1 Median 0.88866 0.89143 NaN 1 0 Median 0.83948 0.70226 32.006 2 0 Median 97690000 49747000 47943000 10698000 5570400 5128000 4720400 2088400 2632000 62880000 32500000 30380000 7805000 3707700 4097300 7756500 3883200 3873300 3830100 1997400 1832700 11591 4368 12064 58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874 59136;59137;59138;59139;59140;59141;59142;59143;59144;59145;59146;59147;59148 59139 13 GLGLDESGLAK STTKTQRIASHSHVKGLGLDESGLAKQAAS SHVKGLGLDESGLAKQAASGLVGQENAREA K G L A K Q 1 0 0 1 0 0 1 3 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1058.5608 Q9Y265 Q9Y265 23 33 RUVBL1 RuvB-like 1 yes yes 2 3.1709E-05 138.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.2621 1.1266 14.675 7 Median 1.2281 1.1266 NaN 1 0 Median 1.5436 1.303 NaN 1 0 Median 1.3166 1.2665 26.279 2 1 Median 1.4427 1.2365 NaN 1 0 Median 1.0685 1.0202 NaN 1 1 Median 1.2621 1.0444 NaN 1 0 Median 217020000 93034000 123990000 59905000 24648000 35256000 48679000 19580000 29099000 75929000 34393000 41536000 14934000 6223600 8710500 14447000 6824300 7622700 3125500 1364500 1761000 11592 4375 12065 58875;58876;58877;58878;58879;58880;58881 59149;59150;59151;59152;59153;59154;59155;59156;59157;59158 59151 9 GLGLEPTALAR CDVALLRGQLAEWRRGLGLEPTALARRERA EWRRGLGLEPTALARRERALGLASGELAAR R G L A R R 2 1 0 0 0 0 1 2 0 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1096.6241 Q8WZA9 Q8WZA9 519 529 IRGQ Immunity-related GTPase family Q protein yes yes 2 0.00018013 111.17 By MS/MS By matching 1 1 0.72141 0.66183 26.557 2 Median 0.82289 0.79854 NaN 1 0 Median 0.63245 0.54852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8126700 4282800 3843900 5333100 2624000 2709100 2793600 1658800 1134800 0 0 0 0 0 0 0 0 0 0 0 0 11593 3526 12066 58882;58883 59159 59159 1 GLGLGANLTEAQALTPTGPSR FNQVVKPRVNSLRPKGLGLGANLTEAQALT NLTEAQALTPTGPSRMPRPDEEQEKDKEDQ K G L S R M 3 1 1 0 0 1 1 4 0 0 4 0 0 0 2 1 3 0 0 0 0 0 21 0 2023.0698 Q92917 Q92917 202 222 GPKOW G patch domain and KOW motifs-containing protein yes yes 2 1.0769E-22 116.84 By MS/MS By MS/MS By matching 1 1 1 0.78414 0.76175 1.5605 3 Median 0.78414 0.78234 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74136 0.76175 NaN 1 0 Median 0.87368 0.76122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8714500 4798300 3916200 2774100 1514900 1259200 0 0 0 5477400 3047600 2429800 462880 235780 227100 0 0 0 0 0 0 11594 3566 12067 58884;58885;58886 59160;59161;59162;59163 59163 4 GLGLGIVAGSLLVK WDLLHVPCLKILLSKGLGLGIVAGSLLVKL KGLGLGIVAGSLLVKLPQVFKILGAKSAEG K G L V K L 1 0 0 0 0 0 0 4 0 1 4 1 0 0 0 1 0 0 0 2 0 0 14 0 1295.8177 J3QS48;I3L295;J3KT75;J3QW43;J3QRD5;O75352;J3KTK8;J3QQZ4 J3QS48 45 58 MPDU1 Mannose-P-dolichol utilization defect 1 protein yes no 2 0.0001649 79.659 By MS/MS 2 1.3079 1.1499 9.6001 2 Median NaN NaN NaN 0 0 Median 1.3079 1.1499 9.6001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14396000 5953500 8442400 0 0 0 14396000 5953500 8442400 0 0 0 0 0 0 0 0 0 0 0 0 11595 1281 12068 58887;58888 59164 59164 1 GLGLKPEKLEK LPADTCLLEFARLVRGLGLKPEKLEKDLDR RLVRGLGLKPEKLEKDLDRYSERARMKGGE R G L E K D 0 0 0 0 0 0 2 2 0 0 3 3 0 0 1 0 0 0 0 0 0 0 11 2 1210.7285 Q8NF37;A0A0G2JQ62;A0A0G2JRI7 Q8NF37 340 350 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes no 3 0.041355 20.204 By MS/MS 1 0.70681 0.68751 NaN 1 Median 0.70681 0.68751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2082100 959840 1122300 2082100 959840 1122300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11596 3433 12069 58889 59165 59165 1 GLGPNLVGVAPSR LKSILEKEGPKSLFRGLGPNLVGVAPSRAV FRGLGPNLVGVAPSRAVYFACYSKAKEQFN R G L S R A 1 1 1 0 0 0 0 3 0 0 2 0 0 0 2 1 0 0 0 2 0 0 13 0 1235.6986 Q9BSK2;D6RB26;D6RCF5;F6SDC8;A0A3B3ISS3;Q96CQ1 Q9BSK2 93 105 SLC25A33;SLC25A36 Solute carrier family 25 member 33;Solute carrier family 25 member 36 yes no 2 0.0012704 56.548 By MS/MS By matching 1 1 0.95009 0.84287 0.88634 2 Median 0.89621 0.8376 NaN 1 0 Median 1.0072 0.84817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11447000 6083200 5364100 9459900 5131300 4328500 1987400 951810 1035600 0 0 0 0 0 0 0 0 0 0 0 0 11597 3817 12070 58890;58891 59166 59166 1 GLGSTVQEIDLTGVK RILGIPVIVTEQYPKGLGSTVQEIDLTGVK GLGSTVQEIDLTGVKLVLPKTKFSMVLPEV K G L V K L 0 0 0 1 0 1 1 3 0 1 2 1 0 0 0 1 2 0 0 2 0 0 15 0 1515.8144 Q96CN7;D6RGE2 Q96CN7 163 177 ISOC1 Isochorismatase domain-containing protein 1 yes no 2 1.992E-09 124.42 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.162 1.0156 5.5206 4 Median 1.131 1.0266 NaN 1 0 Median 1.198 1.0047 NaN 1 0 Median 1.1692 1.119 NaN 1 0 Median 1.1548 0.98858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54534000 24897000 29638000 27934000 13055000 14879000 21815000 9720900 12095000 4255400 1893800 2361600 530070 227280 302790 0 0 0 0 0 0 11598 3619 12071 58892;58893;58894;58895 59167;59168;59169;59170;59171;59172 59169 6 GLGTDDNTLIR NKSAYFAEKLYKSMKGLGTDDNTLIRVMVS KSMKGLGTDDNTLIRVMVSRAEIDMLDIRA K G L I R V 0 1 1 2 0 0 0 2 0 1 2 0 0 0 0 0 2 0 0 0 0 0 11 0 1173.599 P09525;Q6P452 P09525 260 270 ANXA4 Annexin A4;Annexin yes no 2 2.1182E-06 161.92 By MS/MS By MS/MS 1 1 0.96471 0.90285 NaN 1 Median 0.96471 0.90285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18466000 10432000 8034600 18466000 10432000 8034600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11599 1917 12072 58896;58897 59173;59174;59175 59173 3 GLGTDEDAIISVLAYR FNAMEDAQTLRKAMKGLGTDEDAIISVLAY LGTDEDAIISVLAYRNTAQRQEIRTAYKST K G L Y R N 2 1 0 2 0 0 1 2 0 2 2 0 0 0 0 1 1 0 1 1 0 0 16 0 1691.873 P09525;Q6P452;B4E1S2 P09525 29 44 ANXA4 Annexin A4;Annexin yes no 2 1.7794E-07 86.313 By MS/MS 1 1.2755 1.0607 NaN 1 Median NaN NaN NaN 0 0 Median 1.2755 1.0607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14566000 5792400 8773600 0 0 0 14566000 5792400 8773600 0 0 0 0 0 0 0 0 0 0 0 0 11600 1917 12073 58898 59176 59176 1 GLGTDEDSLIEIICSR TPAQYDASELKASMKGLGTDEDSLIEIICS LGTDEDSLIEIICSRTNQELQEINRVYKEM K G L S R T 0 1 0 2 1 0 2 2 0 3 2 0 0 0 0 2 1 0 0 0 0 0 16 0 1776.8564 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 120 135 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 1.9188E-10 112.86 By MS/MS By MS/MS 3 1 1.2305 1.1417 22.641 4 Median NaN NaN NaN 0 0 Median 1.2065 1.0522 27.729 3 2 Median 1.2551 1.2386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28782000 12458000 16325000 0 0 0 25563000 11116000 14447000 3218800 1341600 1877100 0 0 0 0 0 0 0 0 0 11601 1885 12074 58899;58900;58901;58902 59177;59178;59179;59180 59179 4 GLGTDEDTIIDIITHR FNPDADAKALRKAMKGLGTDEDTIIDIITH LGTDEDTIIDIITHRSNVQRQQIRQTFKSH K G L H R S 0 1 0 3 0 0 1 2 1 4 1 0 0 0 0 0 3 0 0 0 0 0 16 0 1767.9003 E5RK69;P08133 P08133 378 393 ANXA6 Annexin;Annexin A6 no no 2;3 5.5694E-10 116.01 By MS/MS By MS/MS By matching 6 3 1 1.217 1.1668 28.953 10 Median 1.0638 1.032 27.484 6 0 Median 1.4582 1.2619 18.821 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9945 2.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median 23475000 10272000 13203000 15509000 7097900 8411500 7714300 3095400 4619000 0 0 0 0 0 0 251800 78947 172850 0 0 0 11602 1898;854 12075 58903;58904;58905;58906;58907;58908;58909;58910;58911;58912 59181;59182;59183;59184;59185;59186;59187;59188;59189 59189 9 GLGTDEDTLIEILASR TPAQFDADELRAAMKGLGTDEDTLIEILAS LGTDEDTLIEILASRTNKEIRDINRVYREE K G L S R T 1 1 0 2 0 0 2 2 0 2 3 0 0 0 0 1 2 0 0 0 0 0 16 0 1701.8785 P04083;Q5T3N1 P04083 129 144 ANXA1 Annexin A1;Annexin yes no 2 4.0148E-106 231.83 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.2289 1.1322 33.897 6 Median 1.1805 1.1529 35.422 2 0 Median 1.1191 0.97125 1.2299 2 2 Median 1.3378 1.3084 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1128 2.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median 415370000 189910000 225460000 9009800 3548600 5461200 396880000 182540000 214340000 9071300 3694700 5376600 0 0 0 404870 122140 282730 0 0 0 11603 1844 12076 58913;58914;58915;58916;58917;58918 59190;59191;59192;59193;59194;59195;59196 59194 7 GLGTDEESILTLLTSR FDERADAETLRKAMKGLGTDEESILTLLTS LGTDEESILTLLTSRSNAQRQEISAAFKTL K G L S R S 0 1 0 1 0 0 2 2 0 1 4 0 0 0 0 2 3 0 0 0 0 0 16 0 1703.8941 P08758;E9PHT9 P08758 30 45 ANXA5 Annexin A5;Annexin yes no 2 6.6184E-05 77.305 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 1.1624 1.0511 17.125 7 Median 1.0953 1.0511 NaN 1 0 Median 1.2063 1.0033 10.478 3 0 Median 1.1044 1.0938 NaN 1 0 Median 1.0407 0.87442 NaN 1 0 Median 1.4683 1.4989 NaN 1 0 Median NaN NaN NaN 0 0 Median 17935000 8141500 9793500 3075700 1436600 1639100 9455100 4135200 5319900 5094700 2433400 2661200 61555 25384 36171 248000 110880 137120 0 0 0 11604 1909 12077 58919;58920;58921;58922;58923;58924;58925 59197;59198;59199;59200;59201;59202;59203 59199 7 GLGTETAEFAELK SHQQAMEELKVSFSKGLGTETAEFAELKTQ SKGLGTETAEFAELKTQIEKMRLDYQHEIE K G L L K T 2 0 0 0 0 0 3 2 0 0 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1364.6824 J3KP58;P30622;F5H0N7;F5H6A0 J3KP58 602 614 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 0.00066746 68.069 By MS/MS By MS/MS 1 1 0.98597 0.91285 5.4289 2 Median 0.98006 0.94857 NaN 1 0 Median 0.99192 0.87847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12662000 5673600 6988500 10315000 4511500 5803600 2347000 1162100 1184900 0 0 0 0 0 0 0 0 0 0 0 0 11605 1308 12078 58926;58927 59204;59205;59206 59204 3 GLGTGQGAVSGPPR KPEEPPPPKKPALDKGLGTGQGAVSGPPRK KGLGTGQGAVSGPPRKPPGTVAGTARGPEG K G L P R K 1 1 0 0 0 1 0 5 0 0 1 0 0 0 2 1 1 0 0 1 0 0 14 0 1252.6524 E7EN32;O00255 E7EN32 448 461 MEN1 Menin yes no 2 1.895E-08 115.18 By matching By MS/MS By MS/MS By matching 1 1 2 2 0.8112 0.74866 31.95 6 Median 0.76016 0.75619 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63502 0.64826 NaN 1 0 Median 0.98609 0.83432 16.734 2 0 Median NaN NaN NaN 0 0 Median 0.73694 0.61895 61.682 2 0 Median 13387000 7616300 5770400 974460 464970 509490 0 0 0 9131700 5515100 3616500 1827900 718390 1109500 0 0 0 1452700 917860 534820 11606 860 12079 58928;58929;58930;58931;58932;58933 59207;59208 59208 2 GLGTGTLYIAESR LLRQQPDTEAVLNGKGLGTGTLYIAESRLS GKGLGTGTLYIAESRLSWLDGSGLGFSLEY K G L S R L 1 1 0 0 0 0 1 3 0 1 2 0 0 0 0 1 2 0 1 0 0 0 13 0 1336.6987 E9PMI6;J3KN38;P54105;E9PJF4 E9PMI6 31 43 CLNS1A Methylosome subunit pICln yes no 2 6.0635E-07 166.66 By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1.1172 0.98085 53.749 10 Median 1.0415 1.0374 17.045 3 0 Median 1.1691 0.98085 32.838 4 1 Median NaN NaN NaN 0 0 Median 0.67973 0.59962 57.787 2 1 Median 2.5949 3.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median 153850000 67190000 86661000 122370000 52578000 69792000 22539000 11533000 11006000 0 0 0 3488700 1975900 1512800 5454300 1104100 4350200 0 0 0 11607 967 12080 58934;58935;58936;58937;58938;58939;58940;58941;58942;58943 59209;59210;59211;59212;59213;59214;59215;59216;59217 59210 9 GLGVGFGSGGGSSSSVK GLSVGGSGFSASSGRGLGVGFGSGGGSSSS GVGFGSGGGSSSSVKFVSTTSSSRKSFKS_ R G L V K F 0 0 0 0 0 0 0 7 0 0 1 1 0 1 0 5 0 0 0 2 0 0 17 0 1438.7052 CON__P13647;P13647 CON__P13647 560 576 KRT5 Keratin, type II cytoskeletal 5 yes no 2 5.1957E-12 100.19 By MS/MS 2 1.5986 1.6655 65.032 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5986 1.6655 65.032 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17203000 5935500 11268000 0 0 0 0 0 0 17203000 5935500 11268000 0 0 0 0 0 0 0 0 0 + 11608 757 12081 58944;58945 59218;59219 59218 2 GLHEAHQLYGR ETKPGLLVGVPGMVKGLHEAHQLYGRLPWS GMVKGLHEAHQLYGRLPWSQVLAFAAAVAQ K G L G R L 1 1 0 0 0 1 1 2 2 0 2 0 0 0 0 0 0 0 1 0 0 0 11 0 1279.6422 Q9UJ14 Q9UJ14 238 248 GGT7 Gamma-glutamyltransferase 7;Gamma-glutamyltransferase 7 heavy chain;Gamma-glutamyltransferase 7 light chain yes yes 3 0.00086738 50.284 By MS/MS By MS/MS 1 1 1.8492 1.7329 20.717 2 Median 1.5024 1.4968 NaN 1 1 Median 2.276 2.0063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2188000 661760 1526200 812290 323710 488580 1375700 338060 1037600 0 0 0 0 0 0 0 0 0 0 0 0 11609 4293 12082 58946;58947 59220;59221 59221 2 GLHEDLQGVPER AASSEHFEKLHEIFRGLHEDLQGVPERLLG IFRGLHEDLQGVPERLLGTAGTEEKKKLIR R G L E R L 0 1 0 1 0 1 2 2 1 0 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1348.6735 Q9UEU0;J3KMW2;G3V5I2 Q9UEU0 20 31 VTI1B Vesicle transport through interaction with t-SNAREs homolog 1B yes no 2 0.019577 52.79 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11610 4256 12083 58948 59222 59222 1 GLHIVPR DVDQGWMRAVRKHAKGLHIVPRLLFEDWTY RAVRKHAKGLHIVPRLLFEDWTYDDFRNVL K G L P R L 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 7 0 790.48136 Q9BWS9 Q9BWS9 143 149 CHID1 Chitinase domain-containing protein 1 yes yes 2 0.056278 50.12 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3146200 0 3146200 0 0 0 0 0 0 1868500 0 1868500 1277600 0 1277600 0 0 0 0 0 0 11611 3874 12084 58949;58950 59223;59224 59223 2 GLHNVVYGIQR TYELDHPGFQIRDSKGLHNVVYGIQRGLGM RDSKGLHNVVYGIQRGLGMEVFPVDLIYRP K G L Q R G 0 1 1 0 0 1 0 2 1 1 1 0 0 0 0 0 0 0 1 2 0 0 11 0 1254.6833 A5YKK6 A5YKK6 373 383 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2;3 0.00013475 103.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 0.89936 0.81099 13.982 6 Median 0.89936 0.85691 16.904 2 1 Median 1.0553 0.89882 5.4275 2 1 Median 0.66957 0.7367 NaN 1 1 Median 0.7771 0.68175 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28700000 14747000 13953000 12321000 6239400 6081900 9026800 4354500 4672300 5669700 3263600 2406100 1682300 889570 792680 0 0 0 0 0 0 11612 503 12085 58951;58952;58953;58954;58955;58956;58957 59225;59226;59227;59228;59229;59230;59231;59232 59229 8 GLHQSIEEFR GVDLPSVEAQLGSHRGLHQSIEEFRAKIER LGSHRGLHQSIEEFRAKIERARSDEGQLSP R G L F R A 0 1 0 0 0 1 2 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1214.6044 Q15149;H0YDN1;E9PMV1 Q15149 697 706 PLEC Plectin yes no 2;3 9.8939E-05 126.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 4 1.2105 1.1636 32.844 17 Median 1.2234 1.1855 7.076 3 0 Median 1.1903 0.99059 47.783 3 0 Median 0.83622 0.87744 52.467 2 0 Median 0.83069 0.72714 33.241 3 0 Median 1.0342 1.0829 12.578 2 0 Median 1.5677 1.2891 8.4389 4 0 Median 271070000 131790000 139280000 71092000 31626000 39466000 124180000 63075000 61105000 45654000 23617000 22038000 5923900 2897800 3026100 10224000 5247200 4977000 14000000 5326400 8673600 11613 2933 12086 58958;58959;58960;58961;58962;58963;58964;58965;58966;58967;58968;58969;58970;58971;58972;58973;58974 59233;59234;59235;59236;59237;59238;59239;59240;59241;59242;59243;59244;59245;59246;59247;59248;59249;59250;59251;59252;59253;59254 59244 22 GLHSQNFTQALLER LVPKPFSQFWQPLLRGLHSQNFTQALLERM RGLHSQNFTQALLERMLSELPALGISGIRP R G L E R M 1 1 1 0 0 2 1 1 1 0 3 0 0 1 0 1 1 0 0 0 0 0 14 0 1612.8322 Q9Y4W2 Q9Y4W2 388 401 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2;3 5.4319E-08 116.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 3 3 1.191 1.1781 14.952 10 Median 1.5702 1.5204 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0704 1.1341 1.3057 2 0 Median 1.3328 1.1481 NaN 1 0 Median 1.1479 1.1957 3.3711 3 0 Median 1.5369 1.2508 25.707 3 0 Median 72856000 34292000 38564000 3611500 1474600 2136900 0 0 0 36398000 17235000 19163000 1308600 546480 762090 26684000 13019000 13665000 4853500 2016800 2836700 11614 4448 12087 58975;58976;58977;58978;58979;58980;58981;58982;58983;58984;58985 59255;59256;59257;59258;59259;59260;59261;59262;59263;59264;59265 59258 11 GLHVVEVTYDDVPIPNSPFK NADGTYQVEYTPFEKGLHVVEVTYDDVPIP EVTYDDVPIPNSPFKVAVTEGCQPSRVQAQ K G L F K V 0 0 1 2 0 0 1 1 1 1 1 1 0 1 3 1 1 0 1 4 0 0 20 0 2225.1368 O75369;E7EN95 O75369 1300 1319 FLNB Filamin-B yes no 3 7.7968E-09 71.558 By MS/MS By MS/MS By MS/MS 1 1 1 0.83973 0.81192 16.705 3 Median 0.83973 0.81192 NaN 1 0 Median 0.78102 0.69033 NaN 1 0 Median 0.86498 0.96413 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13415000 7033500 6381700 8529300 4577400 3951900 2074000 1108600 965340 2811900 1347400 1464400 0 0 0 0 0 0 0 0 0 11615 1664 12088 58986;58987;58988 59266;59267;59268 59266 3 GLIDRDLYR PVNSVFLPKDVALARGLIDRDLYRSLNDPR DVALARGLIDRDLYRSLNDPRDSQKNFVDP R G L Y R S 0 2 0 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 9 1 1119.6037 P15924 P15924 2152 2160 DSP Desmoplakin yes yes 2 0.0022669 107.01 By MS/MS By MS/MS 1 1 0.76408 0.8932 0.84969 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71133 0.89858 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82074 0.88785 NaN 1 1 Median NaN NaN NaN 0 0 Median 14002000 7611900 6390300 0 0 0 0 0 0 3776800 2283600 1493200 0 0 0 10225000 5328300 4897100 0 0 0 11616 2021 12089 58989;58990 59269;59270 59270 2 GLIDVKPLGVIWGK MLDSAAMITVHTPRRGLIDVKPLGVIWGKF RGLIDVKPLGVIWGKFSEFYSKKNTIMFDD R G L G K F 0 0 0 1 0 0 0 3 0 2 2 2 0 0 1 0 0 1 0 2 0 0 14 1 1493.897 Q8WVY7 Q8WVY7 225 238 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 2 0.0001838 85.355 By MS/MS By MS/MS 1 1 1.0803 0.9679 0.77526 2 Median NaN NaN NaN 0 0 Median 1.0678 0.96261 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0929 0.97322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12278000 5777700 6500000 0 0 0 9611100 4472600 5138400 0 0 0 2666700 1305100 1361600 0 0 0 0 0 0 11617 3504 12090 58991;58992 59271;59272;59273;59274 59272 4 GLIENPALLR LKREYLLQYNDPNRRGLIENPALLRWAYAR DPNRRGLIENPALLRWAYARTINVYPNFRP R G L L R W 1 1 1 0 0 0 1 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1094.6448 O95168 O95168 58 67 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes yes 2 0.00034304 121.99 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 0.94603 0.84116 76.307 8 Median 0.96046 0.93529 25.095 2 0 Median 1.5777 1.3102 2.9664 2 0 Median 0.79254 0.80286 NaN 1 0 Median 1.1052 0.88129 NaN 1 0 Median 0.30079 0.3032 127.33 2 0 Median NaN NaN NaN 0 0 Median 108680000 54753000 53930000 67741000 35989000 31752000 27403000 10454000 16949000 11059000 6337000 4722100 339150 151930 187220 2141400 1820900 320500 0 0 0 11618 1751 12091 58993;58994;58995;58996;58997;58998;58999;59000 59275;59276;59277;59278;59279;59280;59281;59282;59283 59279 9 GLIETLR G L L R 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 REV__J3QLU9 yes no 2 0.007586 88.734 By matching By MS/MS By MS/MS By MS/MS 2 2 2 3 1.2202 1.0967 20.958 9 Median NaN NaN NaN 0 0 Median 1.5608 1.3446 28.822 2 0 Median 0.82182 0.89843 0 2 0 Median NaN NaN NaN 0 0 Median 1.2202 1.2813 0 2 0 Median 1.114 0.92693 11.29 3 0 Median 19444000 8460000 10984000 0 0 0 2152600 911640 1241000 4292500 2049100 2243300 0 0 0 7716300 3029700 4686600 5282700 2469500 2813200 + 11619 4530 12092 59001;59002;59003;59004;59005;59006;59007;59008;59009 59284;59285;59286;59287 59287 4 GLIMHEEENLDR LSQFKDFGVRLESLKGLIMHEEENLDRLHQ SLKGLIMHEEENLDRLHQQEKENPDSFLNH K G L D R L 0 1 1 1 0 0 3 1 1 1 2 0 1 0 0 0 0 0 0 0 0 0 12 0 1454.6824 Q8WXH0;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5511 5522 SYNE2 Nesprin-2 yes no 2;3 9.8329E-05 104.22 By MS/MS 2 0.82795 0.88617 32.537 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82795 0.88617 32.537 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11894000 6121300 5773000 0 0 0 0 0 0 11894000 6121300 5773000 0 0 0 0 0 0 0 0 0 11620 3521 12093 59010;59011 59288;59289 59289 2 GLIPVFALGR RFCNTVHDIVNRGGRGLIPVFALGRAQELL NRGGRGLIPVFALGRAQELLLILDEYWQNH R G L G R A 1 1 0 0 0 0 0 2 0 1 2 0 0 1 1 0 0 0 0 1 0 0 10 0 1041.6335 Q9UKF6;G5E9W3 Q9UKF6 236 245 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.00068057 111.04 By matching By matching By MS/MS By matching By matching 1 2 3 3 1 0.98977 0.97779 13.023 10 Median 1.1116 1.1034 NaN 1 0 Median 1.0442 0.93367 6.5902 2 0 Median 0.87696 0.98657 21.445 3 0 Median NaN NaN NaN 0 0 Median 0.94116 1.003 9.8895 3 0 Plateau 1.1093 0.97032 NaN 1 0 Median 36298000 19287000 17011000 1314700 620060 694650 1406900 697070 709870 31640000 17027000 14612000 0 0 0 1565600 742820 822750 370490 199250 171240 11621 4309 12094 59012;59013;59014;59015;59016;59017;59018;59019;59020;59021 59290;59291 59291 2 GLIPWEQAAR PFSGKQVSVFQAMKKGLIPWEQAARLLEAQ QAMKKGLIPWEQAARLLEAQVATGGIIDPT K G L A R L 2 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 10 0 1139.6087 P58107;A0A075B730 P58107 1029 1038 EPPK1 Epiplakin yes no 2 0.00057108 73.248 By MS/MS By MS/MS 2 1 1.0838 1.014 3.5475 3 Median 1.067 1.0336 2.6956 2 0 Median 1.174 0.98136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33311000 15670000 17640000 27251000 13001000 14250000 6059500 2669300 3390200 0 0 0 0 0 0 0 0 0 0 0 0 11622 2520 12095 59022;59023;59024 59292;59293;59294;59295;59296 59293 5 GLIVYQLENQPSEFRR ADVIYPMAVVATAERGLIVYQLENQPSEFR LIVYQLENQPSEFRRIESPLKHQHRCVAIF R G L R R I 0 2 1 0 0 2 2 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 16 1 1948.0167 P78406;E9PQ57;E9PPG9 P78406 191 206 RAE1 mRNA export factor yes no 3 0.052518 9.5697 By matching By MS/MS By matching 1 3 1 0.96033 1.025 14.477 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3205 1.3691 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90131 0.97749 3.3548 3 0 Median 1.1675 1.0268 NaN 1 0 Median 20080000 9796900 10283000 0 0 0 0 0 0 666850 330170 336680 0 0 0 18846000 9221800 9624500 566510 244950 321560 11623 2645 12096 59025;59026;59027;59028;59029 59297;59298 59297 2 GLKAELMER SELKEELKKRRLSDKGLKAELMERLQAALD RRLSDKGLKAELMERLQAALDDEEAGGRPA K G L E R L 1 1 0 0 0 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 1 1045.559 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 29 37 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.0033037 103.83 By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 4 2 1.0233 1.0884 12.368 10 Median 0.94487 0.98484 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.096 1.2163 12.879 2 0 Median 1.4819 1.3486 NaN 1 0 Median 1.0591 1.0201 9.2349 4 0 Linear 1.1912 1.0528 8.5974 2 0 Median 123350000 60329000 63018000 14468000 7455900 7012500 0 0 0 4526900 2037100 2489800 925910 184120 741790 94308000 46839000 47469000 9118400 3812700 5305700 11624 2680 12097 59030;59031;59032;59033;59034;59035;59036;59037;59038;59039 59299;59300;59301;59302;59303;59304;59305;59306;59307;59308;59309;59310 59300 12 GLKPSCTIIPLMK LEIAPHALLQAVLKRGLKPSCTIIPLMKKD KRGLKPSCTIIPLMKKDHRDNLEFFLAGIG R G L M K K 0 0 0 0 1 0 0 1 0 2 2 2 1 0 2 1 1 0 0 0 0 0 13 1 1456.8146 P49327;A0A0U1RQF0 P49327 774 786 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.012209 26.13 By MS/MS 2 1.1843 1.1349 11.731 2 Median NaN NaN NaN 0 0 Median 1.1843 1.1349 11.731 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11849000 5415300 6433300 0 0 0 11849000 5415300 6433300 0 0 0 0 0 0 0 0 0 0 0 0 11625 2377 12098 59040;59041 59311;59312;59313 59311 3 GLKVDLAQR TELRSELQRRGLDSRGLKVDLAQRLQEALD RGLDSRGLKVDLAQRLQEALDAEMLEDEAG R G L Q R L 1 1 0 1 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 998.58728 Q1KMD3;H3BQZ7 Q1KMD3 24 32 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.02897 55.531 By MS/MS By MS/MS 1 1 1.1526 1.1285 8.9715 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0931 1.2024 NaN 1 0 Median 1.2153 1.0591 NaN 1 0 Median 12800000 6535000 6264600 0 0 0 0 0 0 0 0 0 0 0 0 11124000 5813900 5310400 1675200 721060 954160 11626 3002 12099 59042;59043 59314;59315 59314 2 GLKYELISETGGSHDKR KHGKNPVMELNEKRRGLKYELISETGGSHD KYELISETGGSHDKRFVMEVEVDGQKFQGA R G L K R F 0 1 0 1 0 0 2 3 1 1 2 2 0 0 0 2 1 0 1 0 0 0 17 2 1888.9643 Q12906;Q96SI9 Q12906 538 554 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2;3;4 4.953E-14 119.25 By MS/MS By MS/MS By MS/MS By MS/MS 1 5 8 5 0.97268 1.1258 15.341 19 Median 1.2369 1.3624 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90707 1.13 17.436 5 0 Median NaN NaN NaN 0 0 Median 0.94966 1.1153 4.0489 8 0 Median 1.1651 1.1954 21.973 5 0 Median 397250000 193070000 204170000 5808300 2414300 3393900 0 0 0 61264000 30985000 30278000 0 0 0 270980000 133470000 137510000 59194000 26203000 32990000 11627 2769;3734 12100 59044;59045;59046;59047;59048;59049;59050;59051;59052;59053;59054;59055;59056;59057;59058;59059;59060;59061;59062 59316;59317;59318;59319;59320;59321;59322;59323;59324;59325;59326;59327;59328;59329;59330;59331;59332;59333;59334;59335;59336;59337;59338;59339;59340;59341 59338 26 GLLAAAPGLGPR CLQGFVGREVLSFHRGLLAAAPGLGPRAVC FHRGLLAAAPGLGPRAVCRGGSRCSPRARQ R G L P R A 3 1 0 0 0 0 0 3 0 0 3 0 0 0 2 0 0 0 0 0 0 0 12 0 1091.6451 Q8TB03 Q8TB03 46 57 CXorf38 Uncharacterized protein CXorf38 yes yes 2 8.7523E-05 92.439 By MS/MS By MS/MS By matching 1 3 1 0.85652 0.66595 13.526 5 Linear 0.84932 0.84319 NaN 1 0 Median 0.7741 0.66128 4.6104 3 0 Plateau 0.81579 0.79506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11094000 5943800 5150000 7185200 3705400 3479900 1840200 1056400 783820 2068400 1182100 886300 0 0 0 0 0 0 0 0 0 11628 3457 12101 59063;59064;59065;59066;59067 59342;59343;59344;59345 59343 4 GLLAGNVFDWGAK LDALGWEERQLALVKGLLAGNVFDWGAKAV VKGLLAGNVFDWGAKAVSAVLESDPYFGFE K G L A K A 2 0 1 1 0 0 0 3 0 0 2 1 0 1 0 0 0 1 0 1 0 0 13 0 1346.6983 E9PHT6;A0A494C169;Q9NVE7;H0YA26;H0Y9E4 E9PHT6 521 533 PANK4 Pantothenate kinase 4 yes no 2 0.00012318 84.17 By matching By MS/MS 2 1 1.6076 1.4644 35.494 3 Plateau 0.99677 0.97236 28.163 2 0 Median 1.8488 1.6175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7532500 2973200 4559300 3313100 1419000 1894100 4219400 1554200 2665100 0 0 0 0 0 0 0 0 0 0 0 0 11629 466 12102 59068;59069;59070 59346;59347 59347 2 GLLASDLNTDGDMR PTEDDVESKKIKMERGLLASDLNTDGDMRV RGLLASDLNTDGDMRVTPEPGAGPTQGLLR R G L M R V 1 1 1 3 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 0 0 0 14 0 1476.6879 Q86YP4;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5 Q86YP4 34 47 GATAD2A Transcriptional repressor p66-alpha yes no 2 6.9776E-06 92.866 By matching By MS/MS 1 1 1.2662 1.2944 16.901 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1315 1.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4169 1.4587 NaN 1 0 Median NaN NaN NaN 0 0 Median 23206000 9689800 13517000 0 0 0 0 0 0 15474000 6435900 9038600 0 0 0 7732000 3253900 4478100 0 0 0 11630 3309 12103 59071;59072 59348 59348 1 GLLDDLRNDLDR SVKIETNENNLESAKGLLDDLRNDLDRLFV SAKGLLDDLRNDLDRLFVKVEKIHEKV___ K G L D R L 0 2 1 4 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 12 1 1413.7212 Q07065 Q07065 579 590 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 0.00056823 90.108 By MS/MS By MS/MS By matching 2 6 1 1.1921 1.1794 70.869 9 Median 1.1516 1.1345 1.5747 2 0 Median 1.4722 1.3371 32.68 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19541 0.1914 NaN 1 0 Median 109880000 45068000 64816000 32141000 14677000 17464000 76412000 29500000 46911000 0 0 0 0 0 0 0 0 0 1330900 890320 440530 11631 2730 12104 59073;59074;59075;59076;59077;59078;59079;59080;59081 59349;59350;59351;59352 59352 4 GLLDVTCK KTTVSLQAANYLDIKGLLDVTCKTVANMIK ANYLDIKGLLDVTCKTVANMIKGKTPEEIR K G L C K T 0 0 0 1 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 904.4688 E5RJR5;P63208;E7ERH2;F8W8N3 E5RJR5 114 121 SKP1 S-phase kinase-associated protein 1 yes no 2 0.0074447 67.032 By MS/MS 1 1.1882 1.0179 NaN 1 Median NaN NaN NaN 0 0 Median 1.1882 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8445600 3628400 4817100 0 0 0 8445600 3628400 4817100 0 0 0 0 0 0 0 0 0 0 0 0 11632 853 12105 59082 59353;59354 59353 2 GLLEDVQEGR WDLLSSCHFTEEQRRGLLEDVQEGRTTVPQ EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ R G L G R T 0 1 0 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1114.5619 P58107;A0A075B730 P58107 1160 1169 EPPK1 Epiplakin yes no 2 0.00038325 80.219 By MS/MS By MS/MS 2 1 1.9373 1.6375 35.545 3 Median NaN NaN NaN 0 0 Median 1.5991 1.3147 31.051 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0415 2.1336 NaN 1 0 Median NaN NaN NaN 0 0 Median 35228000 13784000 21444000 0 0 0 30147000 12135000 18012000 0 0 0 0 0 0 5081100 1648600 3432400 0 0 0 11633 2520 12106 59083;59084;59085 59355;59356;59357;59358 59355 4 GLLEESSFATLFPK DGWKEPAFSKEDNPRGLLEESSFATLFPKY RGLLEESSFATLFPKYREAYLKECWPLVQK R G L P K Y 1 0 0 0 0 0 2 1 0 0 3 1 0 2 1 2 1 0 0 0 0 0 14 0 1537.8028 Q13601 Q13601 53 66 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.022117 26.889 By MS/MS By MS/MS 1 1 1.0227 0.99232 0.67855 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99861 0.98757 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0474 0.99709 NaN 1 0 Median NaN NaN NaN 0 0 Median 8871200 4043200 4828000 0 0 0 0 0 0 3653900 1666800 1987100 0 0 0 5217300 2376400 2840900 0 0 0 11634 2830 12107 59086;59087 59359;59360;59361;59362;59363;59364 59363 6 GLLEFEHQR DLLEDRSLLLSVNARGLLEFEHQRAPRVSQ LSVNARGLLEFEHQRAPRVSQGSKDPAEGD R G L Q R A 0 1 0 0 0 1 2 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1127.5724 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 174 182 GANAB Neutral alpha-glucosidase AB no no 2 0.00045597 125.25 By MS/MS By MS/MS By matching 4 2 1 1.0586 1.0158 33.755 7 Median 0.98386 0.94862 37.331 4 1 Median 1.2188 1.0251 1.3003 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7185 1.3993 NaN 1 0 Median 233870000 112470000 121400000 103340000 52898000 50441000 128950000 58958000 69995000 0 0 0 0 0 0 0 0 0 1577700 617120 960580 11635 2896;951 12108 59088;59089;59090;59091;59092;59093;59094 59365;59366;59367;59368;59369;59370;59371 59366 7 GLLELNQMR TGSGVTARIALQYHKGLLELNQMRAFKSSA ALQYHKGLLELNQMRAFKSSATGSVFTGKA K G L M R A 0 1 1 0 0 1 1 1 0 0 3 0 1 0 0 0 0 0 0 0 0 0 9 0 1072.5699 Q96EM0;D6RC46;E9PKK7 Q96EM0 288 296 L3HYPDH Trans-3-hydroxy-L-proline dehydratase yes no 2 0.0043711 77.058 By MS/MS 1 0.80341 0.79597 NaN 1 Median 0.80341 0.79597 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5632900 3102100 2530800 5632900 3102100 2530800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11636 3638 12109 59095 59372 59372 1 GLLETTVQK VNRGLAAALLLCQNKGLLETTVQKVARVKA LLCQNKGLLETTVQKVARVKAPNKSLPSAV K G L Q K V 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 987.56006 O43290 O43290 649 657 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.0011181 85.064 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.204 1.1242 29.134 4 Median NaN NaN NaN 0 0 Median 2.1654 1.865 NaN 1 1 Median 1.075 1.1737 NaN 1 0 Median 1.2524 1.0768 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1575 0.95984 NaN 1 1 Median 19138000 8557000 10581000 0 0 0 3860700 1108000 2752700 10427000 5235500 5191900 3686000 1694000 1992000 0 0 0 1163800 519550 644280 11637 1563 12110 59096;59097;59098;59099 59373;59374;59375;59376 59373 4 GLLGALTSTPYSPTQHLER KKFYEFSQRLEAALRGLLGALTSTPYSPTQ ALTSTPYSPTQHLEREQALAKQFAEILHFT R G L E R E 1 1 0 0 0 1 1 2 1 0 4 0 0 0 2 2 3 0 1 0 0 0 19 0 2040.064 Q9NUQ9;E5RI16 Q9NUQ9 106 124 FAM49B Protein FAM49B yes no 2;3 6.6184E-08 79.633 By MS/MS 2 0.75031 0.70099 1.2786 2 Median 0.75031 0.70099 1.2786 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42603000 23025000 19578000 42603000 23025000 19578000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11638 4120 12111 59100;59101 59377;59378;59379 59378 3 GLLGDAPNDPR PIPRGPVTPGGLPPRGLLGDAPNDPRGGTL LPPRGLLGDAPNDPRGGTLLSVTGEVEPRG R G L P R G 1 1 1 2 0 0 0 2 0 0 2 0 0 0 2 0 0 0 0 0 0 0 11 0 1123.5622 P33240;E7EWR4;E9PID8;Q9H0L4 Q9H0L4 328 338 CSTF2;CSTF2T Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant no no 2 0.00018718 76.827 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 0.56363 0.5387 67.389 7 Median 0.56363 0.5387 NaN 1 0 Median 0.73865 0.63879 NaN 1 1 Median 0.53347 0.53384 25.623 2 1 Median 0.21046 0.18112 28.314 2 1 Median NaN NaN NaN 0 0 Median 1.2812 1.0454 NaN 1 0 Median 137690000 84552000 53134000 8998600 5888200 3110500 13265000 7596500 5668500 107970000 65211000 42759000 6539900 5549800 990140 0 0 0 912610 306790 605820 11639 2222;3927 12112 59102;59103;59104;59105;59106;59107;59108;59109 59380;59381;59382;59383;59384;59385;59386;59387;59388 59383 9 GLLGLPEEETELDNLTEFNTAHNKR VKGDEKMGGEDDELKGLLGLPEEETELDNL ELDNLTEFNTAHNKRISTLTIEEGNLDIQR K G L K R I 1 1 3 1 0 0 5 2 1 0 5 1 0 1 1 0 3 0 0 0 0 0 25 1 2839.3988 Q12972;A0A0A0MT09 Q12972 152 176 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 3;4 2.558E-08 41.482 By matching By MS/MS 1 2 0.76189 0.77201 20.107 3 Median NaN NaN NaN 0 0 Median 1.1542 1.0837 NaN 1 0 Median 0.75598 0.76526 1.2414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14422000 7094500 7327700 0 0 0 4129300 1757200 2372200 10293000 5337300 4955500 0 0 0 0 0 0 0 0 0 11640 2775 12113 59110;59111;59112 59389;59390;59391 59390 3 GLLHPQQLHLLSR MKPVNQTAASNKGLRGLLHPQQLHLLSRQL LRGLLHPQQLHLLSRQLEDPNGSFSNAEMS R G L S R Q 0 1 0 0 0 2 0 1 2 0 5 0 0 0 1 1 0 0 0 0 0 0 13 0 1510.8732 Q6PJT7;H0YJA2;G3V411 Q6PJT7 559 571 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 3 0.00055227 49.298 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0187 0.95399 29.638 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54435 0.58083 NaN 1 0 Median 1.0494 0.89771 NaN 1 0 Median 0.98896 1.0138 NaN 1 0 Median 1.4101 1.1476 NaN 1 0 Median 15810000 9350200 6459800 0 0 0 0 0 0 5287000 3586800 1700200 677470 364440 313040 8827400 4937600 3889800 1018100 461420 556680 11641 3175 12114 59113;59114;59115;59116 59392;59393 59393 2 GLLKPGLNVVLEGPK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE R G L P K K 0 0 1 0 0 0 1 3 0 0 4 2 0 0 2 0 0 0 0 2 0 0 15 1 1532.929 H7C2Q8;Q99848 H7C2Q8 85 99 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 4.0652E-05 78.932 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 3 1 0.80908 0.82041 12.172 10 Median 0.78857 0.73807 NaN 1 0 Median 0.65442 0.59456 NaN 1 0 Median 0.78231 0.8525 7.713 2 0 Median 0.8685 0.77336 6.7749 2 0 Median 0.79235 0.84494 3.227 3 0 Median 0.95715 0.85307 NaN 1 0 Median 38727000 20978000 17749000 957270 539060 418210 1004400 560560 443870 5549700 2918600 2631100 400840 205580 195260 30581000 16647000 13934000 232820 106540 126280 11642 1262 12115 59117;59118;59119;59120;59121;59122;59123;59124;59125;59126 59394;59395;59396;59397;59398;59399;59400;59401;59402 59399 9 GLLKPGLNVVLEGPKK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK LLKPGLNVVLEGPKKAVNDVNGLKQCLAEF R G L K K A 0 0 1 0 0 0 1 3 0 0 4 3 0 0 2 0 0 0 0 2 0 0 16 2 1661.024 H7C2Q8;Q99848 H7C2Q8 85 100 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.00033617 39.143 By MS/MS 1 0.8195 0.89664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8195 0.89664 NaN 1 0 Median NaN NaN NaN 0 0 Median 6509600 3084100 3425500 0 0 0 0 0 0 0 0 0 0 0 0 6509600 3084100 3425500 0 0 0 11643 1262 12116 59127 59403;59404 59403 2 GLLLDTSR INKTEIEDFPRFPHRGLLLDTSRHYLPLSS FPRFPHRGLLLDTSRHYLPLSSILDTLDVM R G L S R H 0 1 0 1 0 0 0 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 8 0 873.49198 H3BS10;H3BP20;P06865;H3BU85;H3BTD4 H3BS10 171 178 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.0023833 117.93 By MS/MS By MS/MS By matching 1 2 1 1.2623 1.255 21.171 4 Median 1.1099 1.0543 NaN 1 0 Median 1.4662 1.255 1.2634 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9942 1.7489 NaN 1 0 Median 29721000 13720000 16001000 21081000 10460000 10621000 8136700 3031400 5105300 0 0 0 0 0 0 0 0 0 503320 228570 274750 11644 1218 12117 59128;59129;59130;59131 59405;59406;59407;59408 59405 4 GLLLTGHEDGTVR PITGGRNLAQEPSQRGLLLTGHEDGTVRFW QRGLLLTGHEDGTVRFWDASGVALRPLYKL R G L V R F 0 1 0 1 0 0 1 3 1 0 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1366.7205 A0A087WW77;Q15334 A0A087WW77 446 458 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 2;3 4.1866E-05 90.108 By MS/MS By MS/MS 2 1 1.1121 1.0116 8.6025 3 Median 1.0882 1.0664 7.4565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1121 0.94797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14720000 6843200 7877000 13524000 6397500 7126100 0 0 0 0 0 0 1196500 445660 750860 0 0 0 0 0 0 11645 55 12118 59132;59133;59134 59409;59410;59411 59410 2 GLLLYGPPGTGK ______________________________ PWKGLLLYGPPGTGKTLLAKAVATECKTTF K G L G K T 0 0 0 0 0 0 0 4 0 0 3 1 0 0 2 0 1 0 1 0 0 0 12 0 1171.6601 K7EM02;K7EIJ8;Q8IYT4 K7EM02 13 24 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 yes no 2 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS By MS/MS 6 1 1 1 0.92226 0.84257 8.8785 7 Median 0.90168 0.82948 11.321 4 0 Median 0.96996 0.84948 NaN 1 0 Median 0.84377 0.91817 NaN 1 0 Median 0.92529 0.80434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166380000 82450000 83927000 109970000 53934000 56040000 41068000 20284000 20784000 14131000 7612600 6518500 1203300 618740 584600 0 0 0 0 0 0 11646 1360 12119 59135;59136;59137;59138;59139;59140;59141;59142;59143 59412;59413;59414;59415;59416;59417;59418;59419;59420;59421;59422 59413 11 GLLNAIVIK LMKLPSDVVTAVRGKGLLNAIVIKETKDWD TAVRGKGLLNAIVIKETKDWDAWKVCLRLR K G L I K E 1 0 1 0 0 0 0 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 9 0 939.6117 P04181 P04181 375 383 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.0014584 81.297 By MS/MS By matching By MS/MS By matching 4 5 2 2 1.3094 1.1734 12.273 13 Median 1.2263 1.1355 5.389 4 0 Median 1.4544 1.239 18.891 5 0 Median 1.1891 1.2418 8.0104 2 0 Median 1.4588 1.2624 11.084 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71807000 31201000 40606000 34347000 15649000 18698000 29085000 11893000 17192000 5951400 2677100 3274300 2423600 981180 1442400 0 0 0 0 0 0 11647 1846 12120 59144;59145;59146;59147;59148;59149;59150;59151;59152;59153;59154;59155;59156 59423;59424;59425;59426;59427;59428;59429;59430;59431;59432;59433;59434 59433 12 GLLPEELTPLILATQK AGIAKVLVAQHDVYKGLLPEELTPLILATQ LLPEELTPLILATQKQFNYTHICAGASAFG K G L Q K Q 1 0 0 0 0 1 2 1 0 1 5 1 0 0 2 0 2 0 0 0 0 0 16 0 1735.0131 P13804;H0YL12;H0YLU7;H0YKF0 P13804 86 101 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2;3 1.4148E-05 84.718 By MS/MS By matching By matching By matching By matching 4 2 2 2 1 0.69663 0.65735 18.729 11 Median 0.68364 0.64094 4.7611 4 0 Median 1.0489 0.89557 0.6791 2 0 Median 0.59269 0.5859 9.0937 2 0 Median 1.026 0.86326 2.6983 2 0 Median NaN NaN NaN 0 0 Median 0.72326 0.59426 NaN 1 0 Median 44254000 24757000 19497000 39021000 21963000 17058000 3051500 1526200 1525300 1536100 960000 576130 538410 257640 280760 0 0 0 106950 50604 56348 11648 1996 12121 59157;59158;59159;59160;59161;59162;59163;59164;59165;59166;59167 59435;59436;59437 59436 3 GLLPGLLPAPADK SLTMSSSGSLQASPRGLLPGLLPAPADKLT PRGLLPGLLPAPADKLTPKGPGQVPTATSA R G L D K L 2 0 0 1 0 0 0 2 0 0 4 1 0 0 3 0 0 0 0 0 0 0 13 0 1260.7442 Q6P2E9 Q6P2E9 679 691 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.059321 24.343 By matching By matching By MS/MS By matching 1 2 1 2 0.68891 0.62915 35.015 6 Median 0.69615 0.65744 NaN 1 0 Median 0.64475 0.57214 7.215 2 0 Median 0.45205 0.48396 NaN 1 0 Median 0.97767 0.95867 44.228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4921000 2960600 1960400 1086000 608140 477900 1877100 1102900 774200 1496800 997950 498830 461060 251570 209490 0 0 0 0 0 0 11649 3155 12122 59168;59169;59170;59171;59172;59173 59438 59438 1 GLLPGLLPAPADKLTPK SLTMSSSGSLQASPRGLLPGLLPAPADKLT LPGLLPAPADKLTPKGPGQVPTATSALSLE R G L P K G 2 0 0 1 0 0 0 2 0 0 5 2 0 0 4 0 1 0 0 0 0 0 17 1 1700.0236 Q6P2E9 Q6P2E9 679 695 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.063935 9.9585 By MS/MS 1 0.40282 0.46089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40282 0.46089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2034200 1385200 649010 0 0 0 0 0 0 2034200 1385200 649010 0 0 0 0 0 0 0 0 0 11650 3155 12123 59174 59439 59439 1 GLLPQLLGVAPEK FKKVLRYEGFFGLYRGLLPQLLGVAPEKAI YRGLLPQLLGVAPEKAIKLTVNDFVRDKFM R G L E K A 1 0 0 0 0 1 1 2 0 0 4 1 0 0 2 0 0 0 0 1 0 0 13 0 1333.7969 Q9UJS0 Q9UJS0 393 405 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 0.00049996 72.006 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.90547 0.79635 22.446 8 Median 0.64093 0.6015 26.698 3 0 Median 0.94931 0.80093 0.76671 3 0 Plateau 0.50175 0.53671 NaN 1 0 Median 1.0984 0.9785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42305000 23108000 19196000 14073000 8722700 5350000 27334000 13802000 13533000 843260 558430 284830 54181 25387 28794 0 0 0 0 0 0 11651 4297 12124 59175;59176;59177;59178;59179;59180;59181;59182 59440;59441;59442;59443;59444;59445;59446 59444 7 GLLPTPDEFPR DLRGRGRGTPRGGRKGLLPTPDEFPRFEGG GGRKGLLPTPDEFPRFEGGRKPDSWDGNRE K G L P R F 0 1 0 1 0 0 1 1 0 0 2 0 0 1 3 0 1 0 0 0 0 0 11 0 1240.6452 Q9C0J8 Q9C0J8 1162 1172 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2 0.00017515 78.934 By MS/MS By matching By matching 1 1 1 0.87856 0.8336 13.131 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64406 0.70831 NaN 1 0 Median 0.95119 0.8336 NaN 1 0 Median 0.87856 0.91849 NaN 1 0 Median NaN NaN NaN 0 0 Median 9741400 6052600 3688900 0 0 0 0 0 0 7679700 4872900 2806800 532550 259870 272690 1529200 919820 609390 0 0 0 11652 3907 12125 59183;59184;59185 59447;59448;59449 59449 3 GLLPYDKDLFEPQTALLR NSWKLDPATLRFPLKGLLPYDKDLFEPQTA PYDKDLFEPQTALLRYVLEQPYSRDMVCNM K G L L R Y 1 1 0 2 0 1 1 1 0 0 5 1 0 1 2 0 1 0 1 0 0 0 18 1 2088.1255 Q5JWT2;Q9ULK4 Q5JWT2 254 271 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 3 0.025888 15.942 By MS/MS 1 0.71396 0.81111 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71396 0.81111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2880800 1632400 1248400 0 0 0 0 0 0 2880800 1632400 1248400 0 0 0 0 0 0 0 0 0 11653 3059 12126 59186 59450;59451 59450 2 GLLQLQWK CIDLEPDNATTYVHKGLLQLQWKQDLDRGL ATTYVHKGLLQLQWKQDLDRGLELISKAIE K G L W K Q 0 0 0 0 0 2 0 1 0 0 3 1 0 0 0 0 0 1 0 0 0 0 8 0 984.57565 O94826 O94826 517 524 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 0.0084445 62.842 By MS/MS By matching By matching By matching By matching 2 1 1 1 3 1.2941 1.2386 21.532 8 Median 1.2194 1.2017 5.445 2 0 Median 1.4267 1.2285 NaN 1 0 Median 1.3654 1.4503 NaN 1 0 Median 1.4976 1.2849 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2198 1.0752 31.181 3 0 Median 14774000 6411200 8363200 6627700 3030100 3597500 2864600 1158100 1706500 4521400 1870600 2650800 390320 179680 210650 0 0 0 370440 172730 197700 11654 1728 12127 59187;59188;59189;59190;59191;59192;59193;59194 59452;59453 59452 2 GLLQQIGDALSSQR IRLAQDAEVELERQRGLLQQIGDALSSQRG RGLLQQIGDALSSQRGRVPTAAPPAQP___ R G L Q R G 1 1 0 1 0 3 0 2 0 1 3 0 0 0 0 2 0 0 0 0 0 0 14 0 1484.7947 D6RA48;D6RBS3;D6RAK2;D6R9U2;D6RD15;D6RB69;D6RHZ8;D6RF69;P26572 D6RA48 70 83 MGAT1 Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase yes no 2 0.00076503 61.353 By MS/MS By MS/MS 1 1 1.2696 1.1525 71.856 2 Median NaN NaN NaN 0 0 Median 0.82334 0.69337 NaN 1 0 Median 1.9577 1.9156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9072700 4920700 4152000 0 0 0 8305200 4685900 3619300 767520 234850 532670 0 0 0 0 0 0 0 0 0 11655 808 12128 59195;59196 59454;59455 59455 2 GLLQQVQGPR SSNNQDVVTCDMACKGLLQQVQGPRLPWTR DMACKGLLQQVQGPRLPWTRLLLLLLVFAV K G L P R L 0 1 0 0 0 3 0 2 0 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1094.6196 Q6NUQ4;H7C008;H7BZI0 Q6NUQ4 470 479 TMEM214 Transmembrane protein 214 yes no 2 0.0025617 75.854 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11656 3145 12129 59197 59456 59456 1 GLLQSGQIPGR AIANASTLAEVERLKGLLQSGQIPGRERRS ERLKGLLQSGQIPGRERRSGPTDDGEEEME K G L G R E 0 1 0 0 0 2 0 3 0 1 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1124.6302 P09661;H0YMA0;H0YLR3 P09661 222 232 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 6.4251E-07 167.24 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 0.96982 0.92294 10.987 9 Median 0.96982 0.92228 NaN 1 0 Median 1.1582 0.97961 NaN 1 0 Median 1.0023 0.98831 18.663 2 0 Median 1.1047 0.92294 NaN 1 0 Median 0.90903 0.94347 2.8514 2 0 Median 1.0139 0.80113 8.4711 2 0 Median 470180000 239970000 230210000 45775000 23004000 22771000 11810000 5353300 6457000 122700000 63240000 59461000 42228000 19727000 22500000 227480000 118330000 109140000 20190000 10315000 9875300 11657 1920 12130 59198;59199;59200;59201;59202;59203;59204;59205;59206 59457;59458;59459;59460;59461;59462;59463;59464;59465;59466;59467;59468;59469;59470;59471;59472;59473;59474 59458 18 GLLQSGQIPGRER AIANASTLAEVERLKGLLQSGQIPGRERRS LKGLLQSGQIPGRERRSGPTDDGEEEMEED K G L E R R 0 2 0 0 0 2 1 3 0 1 2 0 0 0 1 1 0 0 0 0 0 0 13 1 1409.7739 P09661;H0YMA0;H0YLR3 P09661 222 234 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 1.287E-05 126.71 By matching By MS/MS 1 2 0.78983 0.85658 29.73 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5445 1.383 NaN 1 0 Median 0.76438 0.82898 4.6316 2 0 Median NaN NaN NaN 0 0 Median 34877000 18533000 16345000 0 0 0 0 0 0 0 0 0 2972300 1143400 1828900 31905000 17389000 14516000 0 0 0 11658 1920 12131 59207;59208;59209 59475;59476;59477;59478 59476 4 GLLQTEPQNNQAK NYRLKEYEKALKYVRGLLQTEPQNNQAKEL VRGLLQTEPQNNQAKELERLIDKAMKKDGL R G L A K E 1 0 2 0 0 3 1 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 13 0 1439.7369 Q9Y3D6 Q9Y3D6 96 108 FIS1 Mitochondrial fission 1 protein yes yes 2 3.9271E-05 90.629 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.1927 1.0209 11.965 5 Median 0.83858 0.79264 NaN 1 0 Median 1.2153 1.0269 0.83795 2 0 Median 1.0724 1.0718 NaN 1 0 Median 1.1927 0.97313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14886000 7309800 7575900 5661100 3237900 2423200 6402900 2862400 3540400 1889800 842290 1047500 931980 367170 564820 0 0 0 0 0 0 11659 4423 12132 59210;59211;59212;59213;59214 59479;59480;59481;59482;59483;59484 59482 6 GLLRPHVPPAAITTLAR ISENFYFDLNSEQMKGLLRPHVPPAAITTL LRPHVPPAAITTLARSAIFSITYPSQDVFL K G L A R S 3 2 0 0 0 0 0 1 1 1 3 0 0 0 3 0 2 0 0 1 0 0 17 1 1782.0628 Q96N67;A0A1B0GUE9;A0A1B0GVW2;A0A0C4DGY6 Q96N67 311 327 DOCK7 Dedicator of cytokinesis protein 7 yes no 3 0.00014491 42.913 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.54051 0.56309 18.537 4 Median 0.49665 0.53112 NaN 1 0 Median 0.78009 0.78776 NaN 1 0 Median 0.47119 0.59522 NaN 1 0 Median 0.58825 0.5327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18985000 12271000 6714200 9735700 6656900 3078900 2367900 1383400 984480 6600500 4069500 2531100 280920 161110 119800 0 0 0 0 0 0 11660 3707 12133 59215;59216;59217;59218 59485;59486;59487 59486 3 GLLSAEVAR PGSRQTLSIYQALKKGLLSAEVARLLLEAQ YQALKKGLLSAEVARLLLEAQAATGFLLDP K G L A R L 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 Q15149;H0YDN1 Q15149 3850 3858 PLEC Plectin yes no 2 0.00078953 97.798 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 5 1 1 1 6 1.272 1.2179 34.557 15 Median 1.2119 1.1993 5.7729 2 0 Median 1.3377 1.2631 9.1781 5 0 Median 1.2436 1.3101 NaN 1 0 Median 1.4004 1.2196 NaN 1 1 Median 1.1193 1.188 NaN 1 0 Median 1.3085 1.0823 58.177 5 1 Median 94949000 41227000 53721000 15627000 6943300 8684100 51765000 22703000 29062000 13577000 5251400 8325800 2916500 1142900 1773700 2298000 1102600 1195500 8764700 4084300 4680400 11661 2933 12134 59219;59220;59221;59222;59223;59224;59225;59226;59227;59228;59229;59230;59231;59232;59233;59234 59488;59489;59490;59491;59492;59493;59494;59495;59496 59490 9 GLLSDSMTDVPVDTGVAAR MDSAGQDINLNSPNKGLLSDSMTDVPVDTG DSMTDVPVDTGVAARTPAVEGLTEAEEEEL K G L A R T 2 1 0 3 0 0 0 2 0 0 2 0 1 0 1 2 2 0 0 3 0 0 19 0 1902.9357 O43399;A0A087WYR3;A0A087WZ51 O43399 16 34 TPD52L2 Tumor protein D54 yes no 2 1.1842E-18 121.28 By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 1.0479 0.89015 25.208 7 Median 0.87282 0.83015 28.082 3 0 Median 1.0479 0.88616 NaN 1 0 Median 1.1608 1.1014 5.267 2 0 Median 1.2381 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79570000 42185000 37386000 65264000 35662000 29602000 8392800 3862100 4530700 5714300 2578400 3135900 198690 81946 116740 0 0 0 0 0 0 11662 1571 12135;12136 59235;59236;59237;59238;59239;59240;59241 59497;59498;59499;59500;59501;59502 59500 507 6 GLLSNHTGSPR GSKVIIREFQEHCRRGLLSNHTGSPRSPST HCRRGLLSNHTGSPRSPSTTYLHTPTPSED R G L P R S 0 1 1 0 0 0 0 2 1 0 2 0 0 0 1 2 1 0 0 0 0 0 11 0 1137.5891 Q13111 Q13111 764 774 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 0.0089061 39.622 By matching By MS/MS By matching 1 1 1 1.3313 1.1445 27.176 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87131 0.93666 NaN 1 0 Median 1.3313 1.1445 NaN 1 0 Median 1.5008 1.6037 NaN 1 0 Median NaN NaN NaN 0 0 Median 2660800 1311000 1349800 0 0 0 0 0 0 831450 386620 444830 555360 242400 312960 1274000 682020 591980 0 0 0 11663 2785 12137 59242;59243;59244 59503;59504 59504 2 GLLSSLDHTSIR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF SHRGLLSSLDHTSIRRGFQVYKQVCASCHS R G L I R R 0 1 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1297.699 P08574 P08574 100 111 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 2;3 9.9099E-07 127.87 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 1 1.2853 1.1843 13.588 9 Median 1.2379 1.1647 10.267 4 2 Median 1.5307 1.295 12.64 2 0 Median 1.1193 1.0643 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4711 1.441 NaN 1 0 Median 1.2319 0.99834 NaN 1 0 Median 139480000 60909000 78568000 125140000 55117000 70025000 9001800 3478000 5523800 3098500 1584800 1513700 0 0 0 1599200 440130 1159100 634810 289250 345560 11664 1903 12138 59245;59246;59247;59248;59249;59250;59251;59252;59253 59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515 59507 11 GLLSSLDHTSIRR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF HRGLLSSLDHTSIRRGFQVYKQVCASCHSM R G L R R G 0 2 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 13 1 1453.8001 P08574 P08574 100 112 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 3 1.2274E-05 88.187 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.4535 1.4485 15.181 5 Median 1.3984 1.5002 4.9573 2 0 Median 1.5622 1.3267 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4021 1.2555 NaN 1 0 Median 1.7083 1.8527 NaN 1 0 Median NaN NaN NaN 0 0 Median 109780000 44909000 64870000 88269000 36282000 51988000 16569000 6525300 10044000 0 0 0 2677200 1186400 1490900 2262800 915240 1347500 0 0 0 11665 1903 12139 59254;59255;59256;59257;59258 59516;59517;59518;59519;59520 59516 5 GLLTILKK ______________________________ ______________________________ M G L K K M 0 0 0 0 0 0 0 1 0 1 3 2 0 0 0 0 1 0 0 0 0 0 8 1 884.60589 P36404;V9GYD0 P36404 2 9 ARL2;ARL2-SNX15 ADP-ribosylation factor-like protein 2 yes no 2 0.044105 38.792 By MS/MS 1 1.5249 1.348 NaN 1 Median NaN NaN NaN 0 0 Median 1.5249 1.348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1151300 374010 777260 0 0 0 1151300 374010 777260 0 0 0 0 0 0 0 0 0 0 0 0 11666 2254 12140 59259 59521 59521 1 GLLTYTSWEDALSR LKRQRLTEPMVRNEKGLLTYTSWEDALSRV KGLLTYTSWEDALSRVAGMLQSFQGKDVAA K G L S R V 1 1 0 1 0 0 1 1 0 0 3 0 0 0 0 2 2 1 1 0 0 0 14 0 1610.794 P28331;B4DJ81 P28331 312 325 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.00039186 71.555 By MS/MS 2 1.3087 1.2732 51.047 2 Median 1.3087 1.2732 51.047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7028100 3412200 3615800 7028100 3412200 3615800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11667 2165 12141 59260;59261 59522;59523 59523 2 GLLVAGMGDVVNIWAGQGK RTLPHGAGHLAFSQRGLLVAGMGDVVNIWA AGMGDVVNIWAGQGKASPPSLEQPYLTHRL R G L G K A 2 0 1 1 0 1 0 5 0 1 2 1 1 0 0 0 0 1 0 3 0 0 19 0 1883.9928 O15213 O15213 413 431 WDR46 WD repeat-containing protein 46 yes yes 2 0.0019238 32.062 By MS/MS 1 0.97252 0.99837 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97252 0.99837 NaN 1 0 Median NaN NaN NaN 0 0 Median 813060 373900 439160 0 0 0 0 0 0 0 0 0 0 0 0 813060 373900 439160 0 0 0 11668 1531 12142 59262 59524 59524 1 GLLVDRPSETK LCADYAEQDELDYHRGLLVDRPSETKTEEQ DYHRGLLVDRPSETKTEEQGIPRPLHPPPP R G L T K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 1 1213.6667 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 1039 1049 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2;3 0.00061148 109.66 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 6 8 0.83601 0.85027 11.381 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73725 0.82889 1.5045 2 0 Median 0.92929 0.89446 21.491 3 1 Plateau 0.80511 0.88564 10.906 6 0 Median 0.96032 0.8552 9.7274 8 0 Median 103450000 55215000 48237000 0 0 0 0 0 0 7496000 4148400 3347500 1691500 963030 728470 64532000 35359000 29173000 29732000 14744000 14988000 11669 4560 12143 59263;59264;59265;59266;59267;59268;59269;59270;59271;59272;59273;59274;59275;59276;59277;59278;59279;59280;59281;59282 59525;59526;59527;59528;59529;59530;59531;59532;59533;59534;59535;59536;59537;59538;59539;59540;59541;59542;59543;59544;59545;59546;59547 59534 23 GLLVDRPSETKTEEQGIPR LCADYAEQDELDYHRGLLVDRPSETKTEEQ DRPSETKTEEQGIPRPLHPPPPPPVQPPQH R G L P R P 0 2 0 1 0 1 3 2 0 1 2 1 0 0 2 1 2 0 0 1 0 0 19 2 2124.1175 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 1039 1057 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 0.0016911 49.224 By MS/MS 1 0.584 0.68317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.584 0.68317 NaN 1 1 Median NaN NaN NaN 0 0 Median 6674800 4461300 2213500 0 0 0 0 0 0 0 0 0 0 0 0 6674800 4461300 2213500 0 0 0 11670 4560 12144 59283 59548 59548 1 GLLYDSDEEDEERPAR QRDREAGRGLGRMRRGLLYDSDEEDEERPA LLYDSDEEDEERPARKRRQVERATEDGEED R G L A R K 1 2 0 3 0 0 4 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 16 1 1892.8388 P49736 P49736 134 149 MCM2 DNA replication licensing factor MCM2 yes yes 3 0.063363 10.658 By MS/MS By matching 1 2 0.88294 0.98097 99.096 3 Median 0.88294 0.98097 NaN 1 0 Median 1.9632 1.788 131.29 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6215700 2285100 3930600 3403100 1580700 1822300 2812600 704360 2108300 0 0 0 0 0 0 0 0 0 0 0 0 11671 2393 12145 59284;59285;59286 59549 59549 1 GLMLVHNK DATLELKVKTVKYFKGLMLVHNKLVDPLYS KTVKYFKGLMLVHNKLVDPLYSIKEKETEK K G L N K L 0 0 1 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 1 0 0 8 0 910.50586 P46926;D6RFF8;D6RAY7 P46926 257 264 GNPDA1 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase yes no 2 0.0055194 75.311 By MS/MS By MS/MS 1 1 1.3005 1.1564 2.1051 2 Median 1.2459 1.1738 NaN 1 0 Median 1.3576 1.1394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10064000 4212300 5851500 6334200 2704800 3629400 3729600 1507500 2222100 0 0 0 0 0 0 0 0 0 0 0 0 11672 2348 12146 59287;59288 59550;59551 59550 2 GLMPDGTSR PKTNLCQKIRVTQGKGLMPDGTSRFTCKGK RVTQGKGLMPDGTSRFTCKGKTILHYMGTS K G L S R F 0 1 0 1 0 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 0 0 9 0 932.43857 P11766;H0YAG8 P11766 121 129 ADH5 Alcohol dehydrogenase class-3 yes no 2 0.015183 43.808 By matching By MS/MS 1 1 1.2656 1.144 12.719 2 Median 1.0814 1.0456 NaN 1 0 Median 1.4812 1.2517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3833200 1756100 2077100 2224300 991070 1233300 1608900 765060 843840 0 0 0 0 0 0 0 0 0 0 0 0 11673 1970 12147 59289;59290 59552;59553 59553 2 GLMPGLTFSNELISR FFSGSFASIFWLKKRGLMPGLTFSNELISR GLMPGLTFSNELISRDEGLHCDFACLMFKH R G L S R D 0 1 1 0 0 0 1 2 0 1 3 0 1 1 1 2 1 0 0 0 0 0 15 0 1633.8498 P31350;A0A286YFD6;C9JXC1;Q7LG56;H0YAV1;A0A0C4DGZ6 P31350 250 264 RRM2;RRM2B Ribonucleoside-diphosphate reductase subunit M2;Ribonucleoside-diphosphate reductase subunit M2 B no no 2 0.00028952 68.676 By MS/MS 1 1.082 0.93906 NaN 1 Median NaN NaN NaN 0 0 Median 1.082 0.93906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4440700 1975100 2465600 0 0 0 4440700 1975100 2465600 0 0 0 0 0 0 0 0 0 0 0 0 11674 2203;1168 12148 59291 59554;59555 59555 2 GLMVLELPK LLSPTQHHVALIGIKGLMVLELPKRWGKNS ALIGIKGLMVLELPKRWGKNSEFEGGKSTV K G L P K R 0 0 0 0 0 0 1 1 0 0 3 1 1 0 1 0 0 0 0 1 0 0 9 0 998.58344 Q99567;J3KMX1 Q99567 130 138 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.015787 43.246 By matching By matching By MS/MS By matching 1 2 2 1 0.89236 0.89267 17.046 6 Median 0.85793 0.87187 NaN 1 0 Median 0.84064 0.74515 27.175 2 0 Median 0.88128 0.91989 5.878 2 0 Median 1.1297 0.98216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12773000 6492800 6280400 473540 228190 245350 2185200 1124500 1060700 8958600 4586000 4372600 1155900 554100 601780 0 0 0 0 0 0 11675 3753 12149 59292;59293;59294;59295;59296;59297 59556;59557 59557 2 GLMVSLSTDDPLQFHFTK FLSYHRNPLPEYLSRGLMVSLSTDDPLQFH VSLSTDDPLQFHFTKVRAQQAARRAGEPLM R G L T K V 0 0 0 2 0 1 0 1 1 0 3 1 1 2 1 2 2 0 0 1 0 0 18 0 2035.0085 H0Y360;Q01433;H0YF16 H0Y360 702 719 AMPD2 AMP deaminase 2 yes no 3 0.052937 9.7575 By MS/MS By matching 1 1 1.1238 1.0622 30.259 2 Median NaN NaN NaN 0 0 Median 1.4848 1.3156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85063 0.85759 NaN 1 0 Median NaN NaN NaN 0 0 Median 2806500 1355300 1451100 0 0 0 1833700 687450 1146300 0 0 0 0 0 0 972780 667900 304880 0 0 0 11676 1141 12150 59298;59299 59558 59558 1 GLNIILISR TDGIGKAYAEELASRGLNIILISRNEEKLQ EELASRGLNIILISRNEEKLQVVAKDIADT R G L S R N 0 1 1 0 0 0 0 1 0 3 2 0 0 0 0 1 0 0 0 0 0 0 9 0 997.62842 Q3SXM5;H3BQI7;H3BT52 Q3SXM5 91 99 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes no 2 0.057789 43.246 By MS/MS 1 1.7509 1.457 NaN 1 Median NaN NaN NaN 0 0 Median 1.7509 1.457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6328100 2116700 4211500 0 0 0 6328100 2116700 4211500 0 0 0 0 0 0 0 0 0 0 0 0 11677 3013 12151 59300 59559 59559 1 GLNISAVR LPYDVTEESIKEFFRGLNISAVRLPREPSN SIKEFFRGLNISAVRLPREPSNPERLKGFG R G L V R L 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 828.48175 E7EX17;P23588;F8W0K0;F8VSC7;F8VP89;F8VX11;F8VRU1;F8VYE9 E7EX17 118 125 EIF4B Eukaryotic translation initiation factor 4B yes no 2 0.00023756 105.39 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 5 0.95815 0.83501 80.451 13 Median 1.0597 1.0027 20.478 3 0 Plateau 0.88683 0.76033 12.379 3 0 Median 0.43229 0.44965 134.59 2 1 Median 0.96915 0.83501 111.68 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75589000 51318000 24271000 16377000 8335700 8040900 14800000 7756700 7043500 33305000 27594000 5710600 11108000 7631300 3476400 0 0 0 0 0 0 11678 904 12152 59301;59302;59303;59304;59305;59306;59307;59308;59309;59310;59311;59312;59313 59560;59561;59562;59563;59564;59565;59566;59567;59568;59569;59570;59571;59572 59562 13 GLNLPTSITSAAFTLR LVEVINKKLWREITKGLNLPTSITSAAFTL LNLPTSITSAAFTLRTQYMKYLYPYECEKR K G L L R T 2 1 1 0 0 0 0 1 0 1 3 0 0 1 1 2 3 0 0 0 0 0 16 0 1660.9148 Q99856;K7EJ04;Q8IVW6;H3BQ92 Q99856 300 315 ARID3A;ARID3B AT-rich interactive domain-containing protein 3A;AT-rich interactive domain-containing protein 3B no no 2 0.00011968 67.153 By matching By MS/MS 1 1 0.95629 0.95126 0.37609 2 Median NaN NaN NaN 0 0 Median 1.0075 0.9538 NaN 1 0 Median 0.90764 0.94874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10974000 5184100 5789400 0 0 0 5621300 2411700 3209700 5352200 2772400 2579800 0 0 0 0 0 0 0 0 0 11679 3772;3320 12153 59314;59315 59573 59573 1 GLNVDQLNMLGEK LSEVLSWQFSSVTKRGLNVDQLNMLGEKLL KRGLNVDQLNMLGEKLLGPNASPDGLIPWT R G L E K L 0 0 2 1 0 1 1 2 0 0 3 1 1 0 0 0 0 0 0 1 0 0 13 0 1429.7235 P42224;J3KPM9 P42224 513 525 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.065591 50.284 By MS/MS 1 1.3248 1.4558 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3248 1.4558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3509500 1334000 2175500 0 0 0 0 0 0 3509500 1334000 2175500 0 0 0 0 0 0 0 0 0 11680 2308 12154 59316 59574 59574 0 GLPDAHLGLPPGLAK SGAPIDLLYELVKQKGLPDAHLGLPPGLAK GLPDAHLGLPPGLAKKSSSLKEVVAGAPRP K G L A K K 2 0 0 1 0 0 0 3 1 0 4 1 0 0 3 0 0 0 0 0 0 0 15 0 1454.8245 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 100 114 WIZ Protein Wiz yes no 3 0.0022485 32.275 By MS/MS By matching 1 1 0.70608 0.75128 28.658 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56656 0.61348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87995 0.92005 NaN 1 0 Median NaN NaN NaN 0 0 Median 4192600 2628600 1564000 0 0 0 0 0 0 3154000 2028300 1125700 0 0 0 1038600 600300 438320 0 0 0 11681 656 12155 59317;59318 59575 59575 1 GLPDNISSVLNK PPEDSIQPYEKIKARGLPDNISSVLNKLVV KARGLPDNISSVLNKLVVVKLNGGLGTSMG R G L N K L 0 0 2 1 0 0 0 1 0 1 2 1 0 0 1 2 0 0 0 1 0 0 12 0 1255.6772 A0A087WYS1;E7EUC7;Q16851;C9JNZ1;C9JTZ5;C9JUW1;C9JWG0;C9JVG3;C9JQU9 A0A087WYS1 96 107 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.012955 35.944 By MS/MS By matching 2 1 0.51185 0.54416 41.247 3 Median 0.61065 0.61094 57.561 2 0 Median NaN NaN NaN 0 0 Median 0.51185 0.54416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19516000 9820300 9696100 18186000 9139300 9046700 0 0 0 1330400 681010 649400 0 0 0 0 0 0 0 0 0 11682 86 12156 59319;59320;59321 59576 59576 1 GLPDQMLYR KFFQKADGVPVYLKRGLPDQMLYRTTMALT PVYLKRGLPDQMLYRTTMALTVGGTIYCLI R G L Y R T 0 1 0 1 0 1 0 1 0 0 2 0 1 0 1 0 0 0 1 0 0 0 9 0 1091.5434 O14548 O14548 80 88 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes yes 2 0.00071478 102.72 By MS/MS By MS/MS 2 2 0.83978 0.74374 18.339 4 Median 0.82573 0.80248 20.699 2 0 Median 0.83978 0.69565 19.401 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38337000 21014000 17323000 32337000 17503000 14834000 5999700 3511200 2488500 0 0 0 0 0 0 0 0 0 0 0 0 11683 1483 12157;12158 59322;59323;59324;59325 59577;59578;59579 59579 478 3 GLPFQANAQDIINFFAPLKPVR ADFGTTSSLHFVHMRGLPFQANAQDIINFF AQDIINFFAPLKPVRITMEYSSSGKATGEA R G L V R I 3 1 2 1 0 2 0 1 0 2 2 1 0 3 3 0 0 0 0 1 0 0 22 1 2455.3376 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 344 365 GRSF1 G-rich sequence factor 1 yes no 3 0.009904 21.006 By MS/MS 1 0.71424 0.7223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71424 0.7223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2808700 1531100 1277600 0 0 0 0 0 0 2808700 1531100 1277600 0 0 0 0 0 0 0 0 0 11684 1035 12159 59326 59580 59580 1 GLPFYAGLSPAGK TDALDSVRERLHGGKGLPFYAGLSPAGKLV GKGLPFYAGLSPAGKLVAYKRKPSSSTSGL K G L G K L 2 0 0 0 0 0 0 3 0 0 2 1 0 1 2 1 0 0 1 0 0 0 13 0 1276.6816 Q8IWI9 Q8IWI9 1449 1461 MGA MAX gene-associated protein yes yes 2 0.0036405 43.512 By MS/MS By matching 2 1 0.80511 0.87144 46.373 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76223 0.83515 6.016 2 0 Median NaN NaN NaN 0 0 Median 0.36048 0.37533 NaN 1 0 Median NaN NaN NaN 0 0 Median 5416300 2962100 2454200 0 0 0 0 0 0 4583000 2416400 2166600 0 0 0 833250 545630 287620 0 0 0 11685 3325 12160 59327;59328;59329 59581;59582 59581 2 GLPITITESDIR HDISDERESKTIMLRGLPITITESDIREMM MLRGLPITITESDIREMMESFEGPQPADVR R G L I R E 0 1 0 1 0 0 1 1 0 3 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1313.7191 P52756;C9J9P7;C9JFQ5 P52756 104 115 RBM5 RNA-binding protein 5 yes no 2 0.0041475 44.309 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.73393 0.70916 17.342 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67702 0.72289 NaN 1 1 Median 0.79564 0.69568 NaN 1 0 Median 0.47968 0.50624 NaN 1 0 Median 0.8605 0.72566 NaN 1 0 Median 6367100 3930000 2437200 0 0 0 0 0 0 2095500 1263700 831770 280320 154650 125670 3784300 2406700 1377600 207080 104940 102140 11686 2457 12161 59330;59331;59332;59333 59583;59584 59584 2 GLPLGSAVSSPVLFSPVGR AGLGPGSTPRTASRKGLPLGSAVSSPVLFS GSAVSSPVLFSPVGRRSSLSSRGTPTRMFP K G L G R R 1 1 0 0 0 0 0 3 0 0 3 0 0 1 3 4 0 0 0 3 0 0 19 0 1839.0254 Q8WUM0 Q8WUM0 36 54 NUP133 Nuclear pore complex protein Nup133 yes yes 2 2.8549E-06 54.524 By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 2 0.67232 0.71913 25.713 7 Median 0.45084 0.45338 NaN 1 0 Median 0.5693 0.50245 NaN 1 0 Median 0.68595 0.75852 3.6122 2 0 Median 0.84394 0.71913 NaN 1 0 Median 0.73532 0.75952 30.739 2 0 Median NaN NaN NaN 0 0 Median 12217000 7295200 4922100 1187500 916400 271100 497860 331190 166670 8199200 4799100 3400100 1438500 738530 699970 894180 509960 384220 0 0 0 11687 3492 12162 59334;59335;59336;59337;59338;59339;59340 59585;59586;59587;59588;59589 59585 5 GLPLTGEYYVENADGK RLCKTKHLIPQESRRGLPLTGEYYVENADG LPLTGEYYVENADGKVTVRRFRKRPEPSSD R G L G K V 1 0 1 1 0 0 2 3 0 0 2 1 0 0 1 0 1 0 2 1 0 0 16 0 1724.8257 Q6W2J9;H7C2V9;A6NE70;H7BZ37;H7C231 Q6W2J9 1376 1391 BCOR BCL-6 corepressor yes no 2 0.00013275 53.252 By MS/MS By matching 2 3 0.94678 0.85165 7.7655 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75618 0.82602 12.236 2 0 Median 1.0143 0.88844 5.276 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14020000 7689900 6329900 0 0 0 0 0 0 13198000 7315000 5883400 821360 374860 446490 0 0 0 0 0 0 11688 3191 12163 59341;59342;59343;59344;59345 59590;59591 59590 2 GLPLVDDGGWNTVPISK SDKRRGGPPGPPISRGLPLVDDGGWNTVPI PLVDDGGWNTVPISKGSRPIDTSRLTKITK R G L S K G 0 0 1 2 0 0 0 3 0 1 2 1 0 0 2 1 1 1 0 2 0 0 17 0 1766.9203 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 880 896 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 5.6031E-07 87.719 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.84658 0.83001 15.159 7 Median 0.84252 0.82312 3.1587 2 0 Median 0.83337 0.72735 18.671 2 0 Median 0.86458 0.92362 NaN 1 0 Median 0.81673 0.74215 NaN 1 0 Median 0.99734 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median 41975000 22315000 19660000 30233000 15900000 14333000 8040500 4477200 3563400 1362500 697030 665420 1434000 788660 645350 905700 452990 452710 0 0 0 11689 894 12164 59346;59347;59348;59349;59350;59351;59352 59592;59593;59594;59595 59593 4 GLPPHLFGPLGPR DDSEMGRLQALLEARGLPPHLFGPLGPRMS ARGLPPHLFGPLGPRMSQLFHRTIGSGASS R G L P R M 0 1 0 0 0 0 0 3 1 0 3 0 0 1 4 0 0 0 0 0 0 0 13 0 1356.7666 Q14669 Q14669 410 422 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.00037501 54.7 By MS/MS 1 0.51372 0.57018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51372 0.57018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1743600 989940 753630 0 0 0 0 0 0 1743600 989940 753630 0 0 0 0 0 0 0 0 0 11690 2886 12165 59353 59596 59596 1 GLPPSMER DLYSSGRDRVGRQERGLPPSMERGYPPPRD RVGRQERGLPPSMERGYPPPRDSYSSSSRG R G L E R G 0 1 0 0 0 0 1 1 0 0 1 0 1 0 2 1 0 0 0 0 0 0 8 0 885.43784 P38159;H3BUY5 P38159 348 355 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 0.0080453 84.244 By matching By MS/MS By MS/MS 1 4 1 0.71573 0.76121 6.1533 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9385 0.81621 NaN 1 0 Median 0.68997 0.74298 5.2618 3 1 Median 0.89044 0.76524 NaN 1 0 Median 21252000 12138000 9113700 0 0 0 0 0 0 0 0 0 2967500 1464600 1502900 12616000 7793600 4822500 5668000 2879600 2788400 11691 2273 12166 59354;59355;59356;59357;59358;59359 59597;59598;59599;59600;59601;59602 59599 6 GLPSPYNMSSAPGSR ITGLRLLEAASVSSKGLPSPYNMSSAPGSR GLPSPYNMSSAPGSRSGSRSGSRSGSRSGS K G L S R S 1 1 1 0 0 0 0 2 0 0 1 0 1 0 3 4 0 0 1 0 0 0 15 0 1519.7089 P15924 P15924 2812 2826 DSP Desmoplakin yes yes 2 1.3392E-09 107.18 By MS/MS By matching By matching By MS/MS By matching 1 1 1 4 1 0.94047 0.92722 54.097 8 Median 1.2557 1.2219 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.133 1.3484 NaN 1 0 Median 2.6693 2.4838 NaN 1 0 Median 0.60716 0.62289 26.782 4 0 Median 1.1907 1.028 NaN 1 0 Median 35479000 16817000 18662000 19701000 8098500 11603000 0 0 0 2226800 1085800 1141000 392400 107040 285360 12560000 7261100 5299200 598230 264220 334010 11692 2021 12167 59360;59361;59362;59363;59364;59365;59366;59367 59603;59604;59605 59603 3 GLPTGDSPLGPMTHR QGQTNRLHDRIVFRRGLPTGDSPLGPMTHR GLPTGDSPLGPMTHRGEEDWLYERLAP___ R G L H R G 0 1 0 1 0 0 0 3 1 0 2 0 1 0 3 1 2 0 0 0 0 0 15 0 1534.7562 J3QQZ9;Q9NVS9 J3QQZ9 212 226 PNPO Pyridoxine-5-phosphate oxidase yes no 3 0.051518 20.389 By MS/MS 1 0.61696 0.58488 NaN 1 Median 0.61696 0.58488 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10549000 6552100 3996700 10549000 6552100 3996700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11693 1346 12168 59368 59606 59606 1 GLPTTTQR TLRHLAPTGNAPASRGLPTTTQRVGSECPD GNAPASRGLPTTTQRVGSECPDRLAMDFGG R G L Q R V 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 8 0 872.47158 H0Y5F5;H0YEU6;H0Y6X6 H0Y5F5 378 385 PABPC4 Polyadenylate-binding protein yes no 2 0.020415 46.426 By MS/MS By MS/MS 1 1 1.0651 0.98707 6.4375 2 Median 0.94958 0.94314 NaN 1 0 Median 1.1948 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7487400 3536500 3951000 1211900 637900 574040 6275500 2898600 3376900 0 0 0 0 0 0 0 0 0 0 0 0 11694 1151 12169 59369;59370 59607;59608 59608 2 GLPWSCSADEVMR MLSTEGREGFVVKVRGLPWSCSADEVMRFF VRGLPWSCSADEVMRFFSDCKIQNGTSGIR R G L M R F 1 1 0 1 1 0 1 1 0 0 1 0 1 0 1 2 0 1 0 1 0 0 13 0 1506.6595 P55795 P55795 17 29 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.00054524 70.942 By MS/MS 1 0.94659 0.94485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94659 0.94485 NaN 1 0 Median NaN NaN NaN 0 0 Median 10878000 5593900 5283900 0 0 0 0 0 0 0 0 0 0 0 0 10878000 5593900 5283900 0 0 0 11695 2502 12170 59371 59609;59610 59609 2 GLPWSCSADEVQR MLGTEGGEGFVVKVRGLPWSCSADEVQRFF VRGLPWSCSADEVQRFFSDCKIQNGAQGIR R G L Q R F 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 2 0 1 0 1 0 0 13 0 1503.6776 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;D6RDL0;D6RF17;D6R9D3 P31943 17 29 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 1.2439E-05 96.015 By matching By MS/MS By MS/MS By matching 2 1 5 2 1.1425 1.0639 60.361 10 Median NaN NaN NaN 0 0 Median 0.44787 0.38759 105.71 2 0 Median 1.1304 1.1202 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1547 1.1859 20.85 5 1 Median 1.3474 1.1577 19.25 2 0 Median 173160000 89983000 83178000 0 0 0 6044400 3389900 2654500 8077500 3905700 4171800 0 0 0 153020000 80097000 72921000 6020300 2589600 3430700 11696 1136 12171 59372;59373;59374;59375;59376;59377;59378;59379;59380;59381 59611;59612;59613;59614;59615;59616;59617 59615 7 GLPWTLAK LDMTARDVQDECKKKGLPWTLAKSFTASCP QDECKKKGLPWTLAKSFTASCPVSAFVPKE K G L A K S 1 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 1 0 0 0 0 8 0 884.51199 Q6P587 Q6P587 116 123 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 1;2 0.0044851 81.297 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0322 0.92115 17.941 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91092 0.85976 5.7787 2 0 Median 1.3686 1.1271 0.74617 2 0 Median 0.69357 0.71245 NaN 1 0 Median 1.1152 0.94742 NaN 1 0 Median 24127000 12067000 12060000 0 0 0 0 0 0 19414000 9833700 9580000 3496400 1491300 2005100 1075700 675150 400590 141200 66487 74717 11697 3160 12172 59382;59383;59384;59385;59386;59387 59618;59619;59620;59621;59622;59623;59624;59625;59626;59627 59620 9 GLQAQIASSGLTVEVDAPK EELLFMKKNHEEEVKGLQAQIASSGLTVEV QIASSGLTVEVDAPKSQDLAKIMADIRAQY K G L P K S 3 0 0 1 0 2 1 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 1883 P05783;F8VZY9 P05783 223 241 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 5.2718E-21 166.38 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 3 2 2 1.0767 1.0272 17.46 14 Median 0.84727 0.82848 NaN 1 0 Median 1.5094 1.2957 8.1619 2 0 Median 1.0385 1.0069 2.828 4 0 Median 1.0682 0.96124 29.234 3 1 Median 1.2457 1.1867 3.8069 2 2 Median 1.1563 0.97072 9.6144 2 0 Median 203960000 95928000 108030000 1465700 833390 632290 8942400 3446400 5496000 158370000 76374000 82001000 23188000 9926600 13262000 9113000 4043400 5069600 2876800 1304600 1572200 11698 1869 12173 59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398;59399;59400;59401 59628;59629;59630;59631;59632;59633;59634;59635;59636;59637;59638;59639;59640;59641;59642;59643;59644 59631 17 GLQDVLR ARAQAALAVNISAARGLQDVLRTNLGPKGT AVNISAARGLQDVLRTNLGPKGTMKMLVSG R G L L R T 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 P40227;Q92526 P40227 29 35 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 no no 2 0.0068426 91.584 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 1.4001 1.2354 46.364 8 Median 1.3749 1.3223 5.5986 2 0 Median 1.4218 1.1974 10.824 3 1 Median 0.6465 0.65459 NaN 1 1 Median 1.3961 1.2009 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.1164 3.5328 NaN 1 0 Median 62355000 27076000 35279000 29372000 12244000 17128000 21311000 9123800 12187000 8264000 4761400 3502600 1971600 721400 1250200 0 0 0 1436400 224770 1211600 11699 2285;3532 12174 59402;59403;59404;59405;59406;59407;59408;59409 59645;59646;59647;59648;59649;59650;59651;59652;59653;59654 59645 10 GLQEAQLDDTKVQEGSQEEELR SSLQEAWGKPEEEQRGLQEAQLDDTKVQEG DDTKVQEGSQEEELRQANRELEKELQNVVG R G L L R Q 1 1 0 2 0 4 5 2 0 0 3 1 0 0 0 1 1 0 0 1 0 0 22 1 2501.1882 Q9BQS8 Q9BQS8 594 615 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 3 4.9826E-15 95.48 By MS/MS By matching 1 1 0.95162 0.93328 11.732 2 Median 0.8542 0.85898 NaN 1 0 Median 1.0602 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11070000 5521800 5548700 9631100 5024100 4607000 1439400 497660 941710 0 0 0 0 0 0 0 0 0 0 0 0 11700 3791 12175 59410;59411 59655;59656 59655 2 GLQEFLDR SVPCQLLESVLQELKGLQEFLDRNSQFAGG SVLQELKGLQEFLDRNSQFAGGPLGNPNTT K G L D R N 0 1 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 O75694;E9PF10 O75694 716 723 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0014789 144.83 By MS/MS By matching By MS/MS By matching By matching 1 1 3 1 1 1.6045 1.6813 29.364 7 Median 1.1005 1.0709 NaN 1 0 Median 2.3171 2.0768 NaN 1 0 Median 1.045 1.1489 25.628 3 0 Median 2.2913 1.9353 NaN 1 0 Median 1.6309 1.6841 NaN 1 0 Median NaN NaN NaN 0 0 Median 22686000 10386000 12300000 3182700 1313100 1869500 170510 62369 108140 18137000 8581600 9555300 353250 149890 203370 842570 279040 563530 0 0 0 11701 1692 12176 59412;59413;59414;59415;59416;59417;59418 59657;59658 59658 2 GLQEGYENSR VNEPYYNEAGFDSDRGLQEGYENSRCYNEM FDSDRGLQEGYENSRCYNEMALIRVVQSMT R G L S R C 0 1 1 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1151.5207 Q9C0C9;K7ES11 Q9C0C9 1089 1098 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.003121 57.859 By MS/MS 1 1.288 1.0842 NaN 1 Median NaN NaN NaN 0 0 Median 1.288 1.0842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1033900 490980 542920 0 0 0 1033900 490980 542920 0 0 0 0 0 0 0 0 0 0 0 0 11702 3904 12177 59419 59659 59659 1 GLQEIEESLR IRHTHQGIEQVQQSRGLQEIEESLRSHGVL VQQSRGLQEIEESLRSHGVLLEVQYSSSIH R G L L R S 0 1 0 0 0 1 3 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1172.6037 B8ZZL5;Q8WV92;H7C3Q6 B8ZZL5 140 149 MITD1 MIT domain-containing protein 1 yes no 2 0.001604 64.04 By matching By MS/MS 1 1 1.2864 1.1597 7.4884 2 Median NaN NaN NaN 0 0 Median 1.2924 1.0998 NaN 1 0 Median 1.2805 1.2227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007300 1670200 2337100 0 0 0 208700 90302 118400 3798600 1579900 2218700 0 0 0 0 0 0 0 0 0 11703 648 12178 59420;59421 59660;59661 59660 2 GLQEVGLPLHR DLVNAHVVPGSGVVKGLQEVGLPLHRGCLL GVVKGLQEVGLPLHRGCLLIAEMSSTGSLA K G L H R G 0 1 0 0 0 1 1 2 1 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1217.6881 P11172 P11172 353 363 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 2;3 5.943E-05 126.52 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.94853 0.88275 31.043 6 Median 0.92889 0.88275 3.4483 2 0 Median 0.83923 0.72001 16.53 2 0 Median 1.2771 1.2858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7002 1.4817 NaN 1 0 Median 44130000 21966000 22163000 34691000 17516000 17174000 6006300 3049300 2957000 3006300 1254300 1752000 0 0 0 0 0 0 426590 146550 280040 11704 1953 12179 59422;59423;59424;59425;59426;59427 59662;59663;59664;59665;59666;59667 59664 6 GLQKEEVVLLTHGDSVDK GVFNISVDNTCSLFRGLQKEEVVLLTHGDS KEEVVLLTHGDSVDKVADGFKVVARSGNIV R G L D K V 0 0 0 2 0 1 2 2 1 0 3 2 0 0 0 1 1 0 0 3 0 0 18 1 1966.0371 P49915 P49915 142 159 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3;4 1.7466E-06 72.421 By MS/MS By MS/MS By matching 3 1 2 1.0891 1.0765 10.061 6 Median 1.0596 0.99785 14.527 3 1 Median NaN NaN NaN 0 0 Median 1.0717 1.1945 NaN 1 0 Median 1.1335 1.0765 0.63233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39873000 18143000 21729000 26992000 12000000 14992000 0 0 0 11220000 5321200 5898900 1660400 821810 838600 0 0 0 0 0 0 11705 2405 12180 59428;59429;59430;59431;59432;59433 59668;59669;59670;59671;59672;59673 59669 6 GLQLGQTSTATIQPSQQAQIVTR GGMVTVIPATVVTSRGLQLGQTSTATIQPS TATIQPSQQAQIVTRSVLQAAAAAAAAASM R G L T R S 2 1 0 0 0 6 0 2 0 2 2 0 0 0 1 2 4 0 0 1 0 0 23 0 2425.2925 O94842 O94842 399 421 TOX4 TOX high mobility group box family member 4 yes yes 2;3 2.4806E-35 123.53 By MS/MS By matching 5 2 0.87762 0.89481 11.73 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84478 0.89481 12.371 5 0 Median 1.0651 0.92557 13.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40381000 21176000 19205000 0 0 0 0 0 0 38428000 20265000 18163000 1952300 910380 1041900 0 0 0 0 0 0 11706 1730 12181 59434;59435;59436;59437;59438;59439;59440 59674;59675;59676;59677;59678 59675 5 GLQQITGHGGLR ______________________________ LKRGLQQITGHGGLRGYLRVFFRTNDAKVG R G L L R G 0 1 0 0 0 2 0 4 1 1 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1235.6735 Q9UI09;F8VRD8;F8VXI1;H0YID5 Q9UI09 10 21 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 2;3 9.279E-05 147.51 By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 1.1163 1.1315 35.479 5 Median 1.2483 1.2075 35.335 2 0 Median NaN NaN NaN 0 0 Median 1.0262 1.0407 11.821 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.7462 2.1568 NaN 1 0 Median 43511000 20526000 22986000 28228000 14318000 13910000 0 0 0 13745000 5514300 8230600 0 0 0 0 0 0 1538500 693190 845360 11707 4286 12182 59441;59442;59443;59444;59445;59446;59447;59448 59679;59680;59681;59682;59683;59684;59685 59680 7 GLQQQNSDWYLK LALFRALQSPALGLRGLQQQNSDWYLKQLL GLRGLQQQNSDWYLKQLLSDKQQKRQSGQT R G L L K Q 0 0 1 1 0 3 0 1 0 0 2 1 0 0 0 1 0 1 1 0 0 0 12 0 1478.7154 P46940;A0A0J9YXZ5 P46940 337 348 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.0212E-06 123.86 By MS/MS By MS/MS 1 2 1.2999 1.2325 11.771 3 Plateau 1.2999 1.2471 NaN 1 0 Median 1.0914 1.0322 6.2233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44403000 18578000 25825000 30156000 12720000 17436000 14247000 5857400 8389600 0 0 0 0 0 0 0 0 0 0 0 0 11708 2350 12183 59449;59450;59451 59686;59687;59688;59689 59686 4 GLQSFVQCQPFER GSLPNVFSALCLNARGLQSFVQCQPFERLF ARGLQSFVQCQPFERLFKVLLSPDYLPAMR R G L E R L 0 1 0 0 1 3 1 1 0 0 1 0 0 2 1 1 0 0 0 1 0 0 13 0 1594.7562 Q7Z6Z7 Q7Z6Z7 617 629 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.016991 32.523 By MS/MS 1 1.1639 0.98325 NaN 1 Median NaN NaN NaN 0 0 Median 1.1639 0.98325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2152900 755440 1397400 0 0 0 2152900 755440 1397400 0 0 0 0 0 0 0 0 0 0 0 0 11709 3253 12184 59452 59690 59690 1 GLQSYYAVAHAVTER QDVDDEYGVSQALARGLQSYYAVAHAVTER GLQSYYAVAHAVTERVDKQSALMVNGVLKQ R G L E R V 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 2 2 0 0 15 0 1663.8318 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3 P51532 727 741 SMARCA4 Transcription activator BRG1 yes no 2;3 1.2365E-08 156.14 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 3 2 1 1.2391 1.1369 8.5635 10 Median NaN NaN NaN 0 0 Median 1.2229 1.085 NaN 1 0 Median 0.98635 1.0752 1.2066 3 1 Median 1.3753 1.2136 3.3093 3 0 Median 1.1272 1.192 16.475 2 0 Median 1.4488 1.191 NaN 1 0 Median 139830000 68601000 71228000 0 0 0 325580 122650 202930 131220000 64829000 66388000 2361900 1011200 1350800 5374100 2444800 2929300 548880 192750 356130 11710 366 12185 59453;59454;59455;59456;59457;59458;59459;59460;59461;59462;59463 59691;59692;59693;59694;59695;59696;59697;59698;59699;59700;59701 59692 11 GLQTSQDAR VLSSGKFYGDEEKDKGLQTSQDARFYALSA DEEKDKGLQTSQDARFYALSASFEPFSNKG K G L A R F 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 9 0 974.47812 P27797 P27797 65 73 CALR Calreticulin yes yes 2 0.0011629 84.568 By MS/MS By MS/MS By matching 2 1 1 1.1037 1.0666 11.254 4 Median 1.1037 1.084 0.68974 2 0 Median 1.2208 1.0546 NaN 1 0 Median 0.79537 0.85905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3336200 1540100 1796100 1218100 573990 644090 1991500 890990 1100500 126620 75104 51518 0 0 0 0 0 0 0 0 0 11711 2157 12186 59464;59465;59466;59467 59702;59703;59704;59705;59706 59706 5 GLQTVHINENFAK GYTIPLDKRLAADGRGLQTVHINENFAKLA GRGLQTVHINENFAKLAEALYIADRKAREA R G L A K L 1 0 2 0 0 1 1 1 1 1 1 1 0 1 0 0 1 0 0 1 0 0 13 0 1469.7627 Q13573;G3V3A4;G3V4X8 Q13573 274 286 SNW1 SNW domain-containing protein 1 yes no 2;3 0.0013098 51.531 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 3 1 1.2513 1.2273 13.02 9 Median 1.4148 1.3403 NaN 1 0 Median 1.8184 1.5702 NaN 1 0 Median 1.2033 1.2287 3.1371 2 1 Median 1.4381 1.2273 NaN 1 0 Median 1.1083 1.06 1.9531 3 0 Plateau 1.527 1.2612 NaN 1 0 Median 102030000 44926000 57108000 8234000 2170700 6063300 1448600 549890 898710 23574000 10867000 12707000 1850100 802770 1047300 65252000 29896000 35355000 1676200 639800 1036400 11712 2826 12187 59468;59469;59470;59471;59472;59473;59474;59475;59476 59707;59708;59709;59710;59711;59712 59711 6 GLQVDTFSR IFILPDEGKLKHLEKGLQVDTFSRWKTLLS LKHLEKGLQVDTFSRWKTLLSRRVVDVSVP K G L S R W 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1021.5193 Q8IW75 Q8IW75 286 294 SERPINA12 Serpin A12 yes yes 2 0.0039044 79.474 By MS/MS 1 0.09088 0.065634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.09088 0.065634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 952240 836060 116170 0 0 0 0 0 0 0 0 0 952240 836060 116170 0 0 0 0 0 0 11713 3321 12188 59477 59713 59713 1 GLQVLMGR SEEKFALVEVIAMIKGLQVLMGRMESVFNH EVIAMIKGLQVLMGRMESVFNHAIRHTVYA K G L G R M 0 1 0 0 0 1 0 2 0 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 872.49021 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JQH3;A0A087WVZ5 Q7L576 460 467 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.0077277 86.086 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11714 3224;897 12189 59478;59479 59714;59715 59714 2 GLQVYIR EKLKDFKIRLQYFARGLQVYIRQLRLALQG IRLQYFARGLQVYIRQLRLALQGKTGEALK R G L I R Q 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 847.49159 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 383 389 API5 Apoptosis inhibitor 5 yes no 2 0.0017395 109.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 1 5 1.2367 1.128 19.469 14 Median 1.1309 1.0846 NaN 1 0 Median 1.2672 1.0989 8.4025 2 0 Median 1.1572 1.1347 3.0956 3 0 Median 1.336 1.1321 1.3447 2 0 Median 1.4821 1.4903 NaN 1 0 Median 1.2714 1.0704 31.912 5 0 Median 126560000 56947000 69612000 7693700 3784400 3909300 6552100 2776500 3775600 79428000 36550000 42878000 17839000 7640800 10199000 3482200 1445500 2036700 11564000 4749400 6814200 11715 1103 12190 59480;59481;59482;59483;59484;59485;59486;59487;59488;59489;59490;59491;59492;59493 59716;59717;59718;59719;59720;59721;59722;59723;59724;59725;59726 59716 11 GLRKPEVGGVIR ______________________________ AARGLRKPEVGGVIRAIVRAGLAMPGPPLG R G L I R A 0 2 0 0 0 0 1 3 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 2 1279.7725 Q9Y3B7;E9PQB6 Q9Y3B7 10 21 MRPL11 39S ribosomal protein L11, mitochondrial yes no 3 0.0004549 53.569 By MS/MS 1 0.97048 0.97372 NaN 1 Median 0.97048 0.97372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1683200 717440 965770 1683200 717440 965770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11716 4416 12191 59494 59727 59727 1 GLSEAAGQTAQMLER EKNQSLVEENEKLSRGLSEAAGQTAQMLER GLSEAAGQTAQMLERIILTEQANEKMNAKL R G L E R I 3 1 0 0 0 2 2 2 0 0 2 0 1 0 0 1 1 0 0 0 0 0 15 0 1560.7566 O95239 O95239 405 419 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 4.7665E-36 215.08 By MS/MS By matching By matching 3 1 2 1.1017 1.0755 67.863 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.155 1.2697 6.7352 2 1 Median NaN NaN NaN 0 0 Median 0.23973 0.25312 NaN 1 0 Median 1.1489 0.94509 18.274 2 0 Median 59863000 28836000 31027000 0 0 0 0 0 0 56119000 26081000 30038000 0 0 0 2571500 2172400 399100 1172900 583040 589850 11717 1757 12192;12193 59495;59496;59497;59498;59499;59500 59728;59729;59730 59729 565 3 GLSEDTTEETLK SPNARSQPSKTLFVKGLSEDTTEETLKESF FVKGLSEDTTEETLKESFDGSVRARIVTDR K G L L K E 0 0 0 1 0 0 3 1 0 0 2 1 0 0 0 1 3 0 0 0 0 0 12 0 1321.6249 P19338;H7BY16 P19338 578 589 NCL Nucleolin yes no 2 3.6978E-06 137.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 4 3 4 1.1484 1.0534 30.234 20 Median 0.96206 0.93412 36.763 3 0 Median 1.1429 0.97907 11.387 4 0 Median 1.0607 1.1196 2.2366 2 0 Median 1.1985 1.0319 24.99 4 0 Median 1.7416 1.6578 19.47 3 2 Plateau 1.2201 1.005 47.475 4 1 Median 168930000 78129000 90800000 12063000 5909800 6153400 59509000 27641000 31867000 31618000 15160000 16459000 33003000 15177000 17826000 21008000 9108500 11899000 11728000 5132700 6595600 11718 2063 12194 59501;59502;59503;59504;59505;59506;59507;59508;59509;59510;59511;59512;59513;59514;59515;59516;59517;59518;59519;59520 59731;59732;59733;59734;59735;59736;59737;59738;59739;59740;59741;59742;59743;59744;59745;59746;59747;59748;59749;59750;59751;59752;59753;59754;59755;59756 59740 26 GLSEDTTEETLKESFDGSVR SPNARSQPSKTLFVKGLSEDTTEETLKESF TTEETLKESFDGSVRARIVTDRETGSSKGF K G L V R A 0 1 0 2 0 0 4 2 0 0 2 1 0 1 0 3 3 0 0 1 0 0 20 1 2199.0179 P19338;H7BY16 P19338 578 597 NCL Nucleolin yes no 2;3 1.0756E-19 135.09 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 9 4 4 5 10 8 1.1055 1.115 22.526 40 Median 1.0436 1.0499 16.41 9 0 Median 1.0983 1.0725 8.9951 4 0 Median 1.1414 1.2806 1.2314 4 0 Median 1.2228 1.1602 24.731 5 0 Median 1.0923 1.197 22.2 10 1 Median 1.1369 1.0173 30.251 8 0 Median 407110000 185900000 221200000 152830000 69839000 82987000 13774000 6335300 7438600 115910000 52587000 63322000 4708800 1938300 2770600 109010000 50262000 58751000 10877000 4941300 5935500 11719 2063 12195 59521;59522;59523;59524;59525;59526;59527;59528;59529;59530;59531;59532;59533;59534;59535;59536;59537;59538;59539;59540;59541;59542;59543;59544;59545;59546;59547;59548;59549;59550;59551;59552;59553;59554;59555;59556;59557;59558;59559;59560 59757;59758;59759;59760;59761;59762;59763;59764;59765;59766;59767;59768;59769;59770;59771;59772;59773;59774;59775;59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791;59792 59759 36 GLSEDVSISK PHLAREFMIKTRRRKGLSEDVSISKFFDDP TRRRKGLSEDVSISKFFDDPMLLELAKQDV K G L S K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 3 0 0 0 1 0 0 10 0 1033.5292 Q15029;K7EP67 Q15029 942 951 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00033784 85.731 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1 4 1.206 1.0666 8.0311 11 Median 1.1033 1.0666 NaN 1 0 Median 1.2881 1.0912 NaN 1 0 Median 0.98036 1.0638 6.5711 2 1 Median 1.2885 1.1256 9.9426 2 0 Median 1.1212 1.1485 NaN 1 0 Median 1.2543 1.0434 10.955 4 1 Median 76166000 33188000 42979000 13352000 5644000 7707600 9294700 3616000 5678700 17638000 9055700 8582700 12425000 3397500 9027700 8462200 4048400 4413700 14994000 7426000 7568200 11720 2917 12196 59561;59562;59563;59564;59565;59566;59567;59568;59569;59570;59571 59793;59794;59795;59796;59797;59798;59799;59800;59801;59802;59803 59800 11 GLSEGHTFQVAEFIVDTR PSEIGDASKVRVWGKGLSEGHTFQVAEFIV EGHTFQVAEFIVDTRNAGYGGLGLSIEGPS K G L T R N 1 1 0 1 0 1 2 2 1 1 1 0 0 2 0 1 2 0 0 2 0 0 18 0 2004.9905 Q14315 Q14315 2050 2067 FLNC Filamin-C yes yes 3 6.8411E-07 81.317 By MS/MS By matching 2 2 1.211 1.1163 30.729 4 Median 1.5021 1.4882 11.308 2 0 Median 1.0417 0.88566 3.3677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19339000 8802100 10537000 9527800 4083500 5444300 9811300 4718500 5092700 0 0 0 0 0 0 0 0 0 0 0 0 11721 2871 12197 59572;59573;59574;59575 59804;59805;59806 59804 3 GLSEKLPEKWESVK MQIEHIIENIVAVTKGLSEKLPEKWESVKL KGLSEKLPEKWESVKLLFVKTEKSAALPIF K G L V K L 0 0 0 0 0 0 3 1 0 0 2 3 0 0 1 2 0 1 0 1 0 0 14 2 1628.8774 O76021;I3L3U9 O76021 236 249 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3;4 6.0725E-18 143.89 By MS/MS By MS/MS 10 5 1.0017 1.0085 15.332 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98291 1.0715 12.885 10 2 Median 1.0242 0.97186 18.016 5 0 Median 200530000 100080000 100440000 0 0 0 0 0 0 0 0 0 0 0 0 185160000 92282000 92876000 15368000 7801900 7565600 11722 1716 12198 59576;59577;59578;59579;59580;59581;59582;59583;59584;59585;59586;59587;59588;59589;59590 59807;59808;59809;59810;59811;59812;59813;59814;59815;59816;59817;59818;59819 59809 13 GLSFLFPLLK IDQNKDRMLEILEGKGLSFLFPLLKLEKEL ILEGKGLSFLFPLLKLEKELLKQIKLDPSP K G L L K L 0 0 0 0 0 0 0 1 0 0 4 1 0 2 1 1 0 0 0 0 0 0 10 0 1133.6849 P78344;D3DQV9;H0Y3P2 P78344 723 732 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.069222 25.737 By matching By matching By MS/MS By matching By matching 1 2 2 1 1 1.0288 1.0253 33.786 7 Median 1.0288 0.98702 NaN 1 0 Median 1.0514 0.94386 11.712 2 0 Median 1.0794 1.124 8.2255 2 0 Median NaN NaN NaN 0 0 Median 2.3342 2.27 NaN 1 0 Median 0.94463 0.828 NaN 1 0 Median 3024800 1433000 1591800 131640 68543 63095 927830 434740 493090 1701100 834460 866600 0 0 0 181780 52637 129150 82520 42639 39880 11723 2639 12199 59591;59592;59593;59594;59595;59596;59597 59820 59820 1 GLSFSEATASNLVK VRISKEQDHIIIIPRGLSFSEATASNLVKV RGLSFSEATASNLVKVNIIGEVVDQGSTNL R G L V K V 2 0 1 0 0 0 1 1 0 0 2 1 0 1 0 3 1 0 0 1 0 0 14 0 1422.7355 Q9UEY8 Q9UEY8 178 191 ADD3 Gamma-adducin yes yes 2 0.00016693 81.017 By MS/MS By MS/MS By matching 2 2 2 0.95476 0.98427 20.386 6 Median 0.91832 0.88328 2.4085 2 0 Median NaN NaN NaN 0 0 Median 1.1035 1.1501 15.961 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1672 1.1599 29.282 2 0 Median 61764000 23350000 38414000 4897000 2554400 2342600 0 0 0 56440000 20630000 35810000 0 0 0 0 0 0 426800 165570 261230 11724 4257 12200 59598;59599;59600;59601;59602;59603 59821;59822;59823;59824;59825 59825 5 GLSGTAVLDLR LRAEFGPPGPGAGSRGLSGTAVLDLRCLEP AGSRGLSGTAVLDLRCLEPEGAAELRLDSH R G L L R C 1 1 0 1 0 0 0 2 0 0 3 0 0 0 0 1 1 0 0 1 0 0 11 0 1100.619 Q9H4A4;A6NKB8;A0A087WU27;A0A087WUS4 Q9H4A4 58 68 RNPEP Aminopeptidase B yes no 2 9.3649E-05 149.72 By MS/MS By MS/MS By matching 2 1 1 1.1865 1.0913 21.471 4 Median 0.98616 0.9478 29.08 2 0 Median 1.1833 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4667 1.2581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44371000 20442000 23930000 27066000 12976000 14090000 16476000 7143900 9332400 0 0 0 828860 321720 507140 0 0 0 0 0 0 11725 3964 12201 59604;59605;59606;59607 59826;59827;59828 59827 3 GLSHVLNR GFHAAPQDVKPNYLKGLSHVLNRLPKPVLL VKPNYLKGLSHVLNRLPKPVLLPELPTLLS K G L N R L 0 1 1 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 1 0 0 8 0 894.50355 Q96T76;H0Y746;H0Y7V3 Q96T76 894 901 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.0034678 94.407 By MS/MS By matching 1 1 1.2766 1.1866 4.0162 2 Median NaN NaN NaN 0 0 Median 1.3528 1.1534 NaN 1 0 Median 1.2047 1.2208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3953700 1590900 2362800 0 0 0 3265600 1280700 1984900 688110 310210 377900 0 0 0 0 0 0 0 0 0 11726 3742 12202 59608;59609 59829;59830 59830 2 GLSIEQLTTLAEK VAEVLSWQFSSTTKRGLSIEQLTTLAEKLL KRGLSIEQLTTLAEKLLGPGVNYSGCQITW R G L E K L 1 0 0 0 0 1 2 1 0 1 3 1 0 0 0 1 2 0 0 0 0 0 13 0 1401.7715 P40763;G8JLH9 P40763 519 531 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription yes no 2 0.00054372 70.977 By MS/MS By MS/MS By matching 1 1 1 1.1497 1.0051 23.663 3 Plateau 1.1195 1.0696 NaN 1 0 Median 1.1497 1.0051 NaN 1 0 Median 0.64661 0.69068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16709000 7811300 8897300 3894700 1978100 1916600 12139000 5444900 6694100 674860 388260 286590 0 0 0 0 0 0 0 0 0 11727 2289 12203 59610;59611;59612 59831;59832 59832 2 GLSLGFLEK LKNFVHAQCLELKAKGLSLGFLEKKHDEAS LELKAKGLSLGFLEKKHDEASSLSHPDLTS K G L E K K 0 0 0 0 0 0 1 2 0 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 962.54368 Q9NU22 Q9NU22 2897 2905 MDN1 Midasin yes yes 2 0.001584 79.906 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2233 1.2464 15.801 4 Median 1.3407 1.3294 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1162 1.1915 NaN 1 0 Median 1.4052 1.3039 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0835 0.94225 NaN 1 0 Median 20852000 9447600 11404000 1342500 671970 670490 0 0 0 18853000 8491200 10362000 583230 253140 330090 0 0 0 72474 31336 41137 11728 4112 12204 59613;59614;59615;59616 59833;59834;59835 59834 3 GLSLQIKPK WFRSTLMLEHQAFEKGLSLQIKPKQTTEFY HQAFEKGLSLQIKPKQTTEFYEQESITPPQ K G L P K Q 0 0 0 0 0 1 0 1 0 1 2 2 0 0 1 1 0 0 0 0 0 0 9 1 982.61752 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2700 2708 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0046629 86.953 By MS/MS By MS/MS 1 1 0.86495 0.929 6.5554 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78109 0.88692 NaN 1 0 Median 0.9578 0.97307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6359300 3266700 3092600 0 0 0 0 0 0 5039900 2500500 2539500 1319300 766240 553100 0 0 0 0 0 0 11729 991 12205 59617;59618 59836;59837;59838 59837 3 GLSLVDKENTPPALSGTR APITDPQQLQLSPLKGLSLVDKENTPPALS LVDKENTPPALSGTRVLASKTARRIFQEPT K G L T R V 1 1 1 1 0 0 1 2 0 0 3 1 0 0 2 2 2 0 0 1 0 0 18 1 1853.9847 P31350;A0A286YFD6 P31350 24 41 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2;3 3.682E-16 110.22 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.74595 0.74016 9.2344 6 Median 0.7279 0.78002 4.1379 2 0 Median 0.74966 0.70099 4.4103 2 0 Median 0.74252 0.84582 NaN 1 0 Median 0.76247 0.67003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59640000 32244000 27396000 41456000 22743000 18713000 2461800 1299600 1162100 14732000 7674700 7057200 990440 526290 464150 0 0 0 0 0 0 11730 2203 12206 59619;59620;59621;59622;59623;59624 59839;59840;59841;59842;59843;59844;59845;59846 59839 8 GLSLVLSEGSLR RLGSSQVASRVLAMKGLSLVLSEGSLRDGE AMKGLSLVLSEGSLRDGEEKEPPMEEDVGD K G L L R D 0 1 0 0 0 0 1 2 0 0 4 0 0 0 0 3 0 0 0 1 0 0 12 0 1229.698 Q8N201 Q8N201 993 1004 INTS1 Integrator complex subunit 1 yes yes 2 0.0012722 54.982 By matching By MS/MS 1 1 1.2561 1.2474 27.795 2 Median NaN NaN NaN 0 0 Median 1.1545 1.0248 NaN 1 0 Median 1.3666 1.5183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2750300 1127200 1623100 0 0 0 308300 179330 128960 2442000 947820 1494200 0 0 0 0 0 0 0 0 0 11731 3360 12207 59625;59626 59847 59847 1 GLSNLFLSCPIPK IELAKTEKYWDGWFRGLSNLFLSCPIPKLL FRGLSNLFLSCPIPKLLLLAGVDRLDKDLT R G L P K L 0 0 1 0 1 0 0 1 0 1 3 1 0 1 2 2 0 0 0 0 0 0 13 0 1444.7748 Q9Y570 Q9Y570 304 316 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.01125 52.79 By MS/MS 1 0.91696 0.78426 NaN 1 Median NaN NaN NaN 0 0 Median 0.91696 0.78426 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1374900 697880 677060 0 0 0 1374900 697880 677060 0 0 0 0 0 0 0 0 0 0 0 0 11732 4453 12208 59627 59848 59848 1 GLSNPNELQAAIDSNR TQYMKYLYPYECEKRGLSNPNELQAAIDSN LSNPNELQAAIDSNRREGRRQSFGGSLFAY R G L N R R 2 1 3 1 0 1 1 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 16 0 1697.8333 Q99856;K7EJ04 Q99856 331 346 ARID3A AT-rich interactive domain-containing protein 3A yes no 2 1.1887E-09 132.32 By MS/MS By matching 1 1 0.8206 0.75945 6.8336 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77933 0.79704 NaN 1 0 Median 0.86405 0.72362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8580500 5053000 3527500 0 0 0 0 0 0 7741200 4599100 3142100 839260 453850 385410 0 0 0 0 0 0 11733 3772 12209 59628;59629 59849;59850 59849 2 GLSNPNELQAAIDSNRR TQYMKYLYPYECEKRGLSNPNELQAAIDSN SNPNELQAAIDSNRREGRRQSFGGSLFAYS R G L R R E 2 2 3 1 0 1 1 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 17 1 1853.9344 Q99856;K7EJ04 Q99856 331 347 ARID3A AT-rich interactive domain-containing protein 3A yes no 3 3.7434E-11 104.41 By MS/MS By matching By matching 2 2 1 0.7918 0.88359 31.209 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73015 0.80258 13.599 2 0 Median 1.3669 1.231 2.0678 2 0 Median NaN NaN NaN 0 0 Median 0.69262 0.61235 NaN 1 0 Median 41678000 21946000 19731000 0 0 0 0 0 0 39465000 20994000 18471000 1475600 505660 969960 0 0 0 736890 446830 290060 11734 3772 12210 59630;59631;59632;59633;59634 59851;59852 59852 2 GLSNPSEVEVLR LGCLRAIILFNPDAKGLSNPSEVEVLREKV DAKGLSNPSEVEVLREKVYASLETYCKQKY K G L L R E 0 1 1 0 0 0 2 1 0 0 2 0 0 0 1 2 0 0 0 2 0 0 12 0 1298.683 P28702;A0A0G2JKR7 P28702 453 464 RXRB Retinoic acid receptor RXR-beta yes no 2 0.0012241 64.297 By matching By matching By MS/MS By matching 1 1 3 1 1.0408 0.90993 50.538 6 Median NaN NaN NaN 0 0 Median 1.3517 1.1254 NaN 1 0 Median 0.84013 0.87973 NaN 1 0 Median 1.0938 0.94118 16.57 3 1 Median NaN NaN NaN 0 0 Median 0.34625 0.29552 NaN 1 0 Median 20021000 9585500 10436000 0 0 0 5925000 2328700 3596300 5207000 3109800 2097200 7999600 3531300 4468300 0 0 0 889480 615710 273770 11735 280 12211 59635;59636;59637;59638;59639;59640 59853;59854 59853 2 GLSPAQADSQFLENAK KELEEKVAELHKTHRGLSPAQADSQFLENA LSPAQADSQFLENAKRLSMYGVDLHHAKDS R G L A K R 3 0 1 1 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 16 0 1674.8213 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 384 399 EPB41L2 Band 4.1-like protein 2 yes no 2 3.379E-05 81.92 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.93109 0.7929 21.106 5 Median 1.1984 1.1614 NaN 1 1 Median 0.97027 0.8421 NaN 1 0 Median 0.70829 0.75716 NaN 1 0 Median 0.85361 0.72171 13.303 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23455000 11799000 11656000 9155100 4171100 4984000 3174700 1569200 1605500 9482200 5264500 4217800 1642600 793870 848680 0 0 0 0 0 0 11736 1573 12212 59641;59642;59643;59644;59645 59855;59856;59857 59856 3 GLSPAQADSQFLENAKR KELEEKVAELHKTHRGLSPAQADSQFLENA SPAQADSQFLENAKRLSMYGVDLHHAKDSE R G L K R L 3 1 1 1 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 17 1 1830.9224 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 384 400 EPB41L2 Band 4.1-like protein 2 yes no 3 6.9676E-11 99.451 By MS/MS By matching By MS/MS 1 1 1 0.78789 0.77694 16.361 3 Median 0.97521 1.0164 NaN 1 0 Median 0.78789 0.75589 NaN 1 0 Median 0.68516 0.77694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33746000 17927000 15819000 13778000 7252300 6525900 693450 227310 466140 19274000 10447000 8827300 0 0 0 0 0 0 0 0 0 11737 1573 12213 59646;59647;59648 59858;59859;59860;59861 59859 4 GLSQNQQIPQNSVTPR KEISEASENIYSDVRGLSQNQQIPQNSVTP LSQNQQIPQNSVTPRRGRRKKEVNQDILEN R G L P R R 0 1 2 0 0 4 0 1 0 1 1 0 0 0 2 2 1 0 0 1 0 0 16 0 1765.9071 Q8WYP5 Q8WYP5 1795 1810 AHCTF1 Protein ELYS yes yes 2 1.151E-06 91.961 By MS/MS 1 0.65631 0.71532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65631 0.71532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16667000 8712100 7954400 0 0 0 0 0 0 16667000 8712100 7954400 0 0 0 0 0 0 0 0 0 11738 3524 12214 59649 59862;59863 59862 2 GLSQSALPYR ______________________________ HAPGKGLSQSALPYRRSVPTWLKLTSDDVK K G L Y R R 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 10 0 1090.5771 P62277;J3KMX5;E9PS50 P62277 10 19 RPS13 40S ribosomal protein S13 yes no 2 2.065E-10 174.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 3 3 0.97073 0.90399 34.037 13 Median 0.83554 0.78668 60.032 4 1 Median 0.88595 0.72477 22.283 2 1 Median 0.95208 0.91464 NaN 1 0 Median 1.297 1.0745 NaN 1 0 Median 0.9688 1.0055 3.0291 2 0 Median 1.537 1.2029 22.405 3 0 Plateau 260980000 123280000 137700000 115140000 56496000 58641000 84616000 40763000 43853000 16519000 8027900 8490800 2616600 1174200 1442400 16307000 7354300 8952400 25783000 9461700 16321000 11739 2580 12215 59650;59651;59652;59653;59654;59655;59656;59657;59658;59659;59660;59661;59662;59663;59664 59864;59865;59866;59867;59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879;59880;59881;59882;59883;59884;59885;59886;59887 59878 24 GLSQSALPYRR ______________________________ APGKGLSQSALPYRRSVPTWLKLTSDDVKE K G L R R S 1 2 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 11 1 1246.6782 P62277;J3KMX5;E9PS50 P62277 10 20 RPS13 40S ribosomal protein S13 yes no 2;3 3.9299E-05 99.139 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 2 0.90203 0.84326 33.204 12 Median 0.56878 0.59618 51.269 3 2 Median 0.76852 0.70306 23.331 3 2 Median 0.77892 0.80762 28.345 2 1 Median 1.0881 0.97426 26.033 2 0 Median 0.93614 1.0521 5.7324 2 1 Median NaN NaN NaN 0 0 Median 535530000 337560000 197970000 378630000 253220000 125420000 107840000 59121000 48720000 22653000 12580000 10072000 9562400 4215600 5346800 16841000 8426200 8414700 0 0 0 11740 2580 12216 59665;59666;59667;59668;59669;59670;59671;59672;59673;59674;59675;59676;59677 59888;59889;59890;59891;59892;59893;59894;59895;59896;59897;59898;59899;59900;59901;59902;59903;59904 59903 17 GLSSDNKPMVNLDK AARAARFGISSVPTKGLSSDNKPMVNLDKL KGLSSDNKPMVNLDKLKERAQRFGLNVSSI K G L D K L 0 0 2 2 0 0 0 1 0 0 2 2 1 0 1 2 0 0 0 1 0 0 14 1 1516.7555 P82979;H0YHG0;F8VZQ9 P82979 136 149 SARNP SAP domain-containing ribonucleoprotein yes no 2;3 3.1677E-68 250.69 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 6 6 3 4 0.94913 0.89191 14.233 20 Median 0.91514 0.89086 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76892 0.78302 11.618 6 0 Median 1.0295 0.89716 4.8767 6 0 Median 0.86734 0.93139 22.456 3 0 Median 0.97738 0.83915 9.6467 4 1 Median 425330000 217830000 207500000 2828400 1617300 1211100 0 0 0 144670000 80183000 64490000 227410000 110300000 117110000 41957000 21952000 20005000 8458300 3778300 4680000 11741 2661 12217;12218 59678;59679;59680;59681;59682;59683;59684;59685;59686;59687;59688;59689;59690;59691;59692;59693;59694;59695;59696;59697 59905;59906;59907;59908;59909;59910;59911;59912;59913;59914;59915;59916;59917;59918;59919;59920;59921;59922;59923;59924;59925;59926;59927 59923 1345 23 GLSSDNKPMVNLDKLK AARAARFGISSVPTKGLSSDNKPMVNLDKL LSSDNKPMVNLDKLKERAQRFGLNVSSISR K G L L K E 0 0 2 2 0 0 0 1 0 0 3 3 1 0 1 2 0 0 0 1 0 0 16 2 1757.9346 P82979;H0YHG0;F8VZQ9 P82979 136 151 SARNP SAP domain-containing ribonucleoprotein yes no 3 0.029437 17.281 By MS/MS By MS/MS 2 1 0.93275 0.9914 10.477 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91784 0.85632 3.7817 2 0 Median 0.93275 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median 12103000 6206800 5896500 0 0 0 0 0 0 0 0 0 3816100 2093700 1722300 8287200 4113000 4174100 0 0 0 11742 2661 12219 59698;59699;59700 59928;59929;59930 59929 3 GLSSHVEVVEK LSKLESVRMKVPKEKGLSSHVEVVEKEGRL PKEKGLSSHVEVVEKEGRLKARKHLKPEQP K G L E K E 0 0 0 0 0 0 2 1 1 0 1 1 0 0 0 2 0 0 0 3 0 0 11 0 1182.6245 Q96T58 Q96T58 944 954 SPEN Msx2-interacting protein yes yes 2 0.0018201 56.916 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.92014 0.90962 27.083 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0703 1.1726 NaN 1 0 Median 0.98007 0.91212 NaN 1 0 Median 0.86388 0.90712 NaN 1 0 Median 0.71086 0.60902 NaN 1 0 Median 10312000 5296000 5016300 0 0 0 0 0 0 1928200 985810 942350 659320 296630 362690 4034100 2067900 1966200 3690800 1945700 1745100 11743 3741 12220 59701;59702;59703;59704 59931;59932;59933 59932 3 GLSSHVEVVEKEGR LSKLESVRMKVPKEKGLSSHVEVVEKEGRL KGLSSHVEVVEKEGRLKARKHLKPEQPADG K G L G R L 0 1 0 0 0 0 3 2 1 0 1 1 0 0 0 2 0 0 0 3 0 0 14 1 1524.7896 Q96T58 Q96T58 944 957 SPEN Msx2-interacting protein yes yes 3 0.00019523 65.805 By MS/MS By matching By matching 1 1 1 1.0849 1.2276 32.75 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0695 1.2352 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0849 1.2276 NaN 1 0 Median 0.79764 0.6983 NaN 1 0 Median 5842900 2762100 3080900 0 0 0 0 0 0 1577800 751770 825990 0 0 0 3317100 1513100 1804000 948000 497140 450860 11744 3741 12221 59705;59706;59707 59934;59935 59934 2 GLSSILDAAR VMGNRRSDEPAKTKKGLSSILDAARWNRGE AKTKKGLSSILDAARWNRGEPQVPDFRHLK K G L A R W 2 1 0 1 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1001.5506 M0QZR4;Q92888;M0QZH8 M0QZR4 264 273 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 2 0.0011606 67.993 By MS/MS By matching 1 1 1.3249 1.2238 34.733 2 Median 0.95792 0.9573 NaN 1 0 Median 1.8326 1.5645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1789100 857760 931360 1468600 722180 746440 320500 135580 184910 0 0 0 0 0 0 0 0 0 0 0 0 11745 1424 12222 59708;59709 59936 59936 1 GLSSLLCNFTK AVREPKLPVLAGCLKGLSSLLCNFTKSMEE GCLKGLSSLLCNFTKSMEEDPQTSREIFNF K G L T K S 0 0 1 0 1 0 0 1 0 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6329 P78527 P78527 226 236 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00027281 73.067 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.99069 1.0589 27.907 5 Median 0.80014 0.78036 NaN 1 0 Median 1.4929 1.3159 NaN 1 0 Median 0.99033 1.0589 NaN 1 0 Median 1.7421 1.6349 NaN 1 0 Median 0.99069 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median 21757000 10021000 11736000 160700 76329 84374 9346800 3757700 5589000 10973000 5678700 5294700 863340 303210 560140 413280 205180 208090 0 0 0 11746 2647 12223 59710;59711;59712;59713;59714 59937;59938;59939 59938 3 GLSSLLYGSIPK VRQTVRSHGVLGLYRGLSSLLYGSIPKAAV LYRGLSSLLYGSIPKAAVRFGMFEFLSNHM R G L P K A 0 0 0 0 0 0 0 2 0 1 3 1 0 0 1 3 0 0 1 0 0 0 12 0 1233.6969 P53007 P53007 86 97 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.00060007 70.908 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 2 1.1909 1.092 23.203 8 Median 0.79528 0.74337 2.7793 2 0 Median 1.4767 1.2415 NaN 1 0 Median 0.7647 0.74685 NaN 1 0 Median 1.4363 1.2043 NaN 1 0 Median 1.0472 1.0769 NaN 1 0 Median 1.3699 1.1314 3.0404 2 0 Median 64192000 33280000 30911000 45142000 25232000 19910000 7939600 3117900 4821700 1067700 540240 527460 144060 62532 81533 3707000 1735500 1971500 6191300 2591600 3599800 11747 2464 12224 59715;59716;59717;59718;59719;59720;59721;59722 59940;59941;59942 59941 3 GLSTEDATSAYISK DLKGKAKWEAWNLKKGLSTEDATSAYISKA KGLSTEDATSAYISKAKELIEKYGI_____ K G L S K A 2 0 0 1 0 0 1 1 0 1 1 1 0 0 0 3 2 0 1 0 0 0 14 0 1441.6937 Q8N6N7 Q8N6N7 65 78 ACBD7 Acyl-CoA-binding domain-containing protein 7 yes yes 2 7.4957E-08 100.72 By MS/MS By MS/MS By matching 2 1 1 1.0427 0.83334 10.179 4 Linear 0.96649 0.86528 17.005 2 0 Median 0.99667 0.81737 NaN 1 0 Median 0.83593 0.84963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17937000 8630900 9306100 11268000 5386700 5880800 6056600 2916500 3140000 612950 327680 285270 0 0 0 0 0 0 0 0 0 11748 3387 12225 59723;59724;59725;59726 59943;59944;59945;59946 59943 4 GLSVDSAQEVK SSGEGVNSVSSSIKRGLSVDSAQEVKRFRT SIKRGLSVDSAQEVKRFRTATGAISAVFGR R G L V K R 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1131.5772 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2030 2040 TRRAP Transformation/transcription domain-associated protein yes no 2 0.036378 48.283 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11749 991 12226 59727 59947 59947 1 GLSVDSAQEVKR SSGEGVNSVSSSIKRGLSVDSAQEVKRFRT IKRGLSVDSAQEVKRFRTATGAISAVFGRS R G L K R F 1 1 0 1 0 1 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 12 1 1287.6783 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2030 2041 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00096107 57.175 By matching By MS/MS By MS/MS 1 2 1 0.98688 1.024 38.205 4 Median NaN NaN NaN 0 0 Median 0.7778 0.75513 NaN 1 0 Median 1.2111 1.4179 39.111 2 1 Median 1.0469 0.97514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5103500 2530500 2573000 0 0 0 1288200 624670 663540 3028200 1453000 1575200 787120 452880 334240 0 0 0 0 0 0 11750 991 12227 59728;59729;59730;59731 59948;59949;59950 59950 3 GLSWQPPPYTPTPR AARSTASALTKLLTKGLSWQPPPYTPTPRF KGLSWQPPPYTPTPRFRLTFFICSVGFTSP K G L P R F 0 1 0 0 0 1 0 1 0 0 1 0 0 0 5 1 2 1 1 0 0 0 14 0 1595.8096 Q7Z6Z7 Q7Z6Z7 1112 1125 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00016414 79.693 By MS/MS By matching 1 1 0.47969 0.43663 14.187 2 Median 0.40537 0.39495 NaN 1 0 Median 0.56763 0.4827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19165000 13039000 6126600 16643000 11434000 5208800 2522400 1604600 917750 0 0 0 0 0 0 0 0 0 0 0 0 11751 3253 12228 59732;59733 59951;59952 59952 2 GLSYLQLK KWVTALEEIPSLIIKGLSYLQLKNTKQDSL IPSLIIKGLSYLQLKNTKQDSLGQLVDWTM K G L L K N 0 0 0 0 0 1 0 1 0 0 3 1 0 0 0 1 0 0 1 0 0 0 8 0 920.53312 Q69YN4 Q69YN4 414 421 KIAA1429 Protein virilizer homolog yes yes 2 0.0084743 62.717 By MS/MS 1 1.0428 1.1524 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0428 1.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10029000 5124900 4904500 0 0 0 0 0 0 10029000 5124900 4904500 0 0 0 0 0 0 0 0 0 11752 3130 12229 59734 59953;59954 59954 2 GLTAQIQSFGR VEMEQKLLMVTKENKGLTAQIQSFGRSMSS KENKGLTAQIQSFGRSMSSLQNSRDHANEE K G L G R S 1 1 0 0 0 2 0 2 0 1 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1176.6251 Q14789 Q14789 2728 2738 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.00013691 145.17 By MS/MS 1 1.2291 0.98857 NaN 1 Median NaN NaN NaN 0 0 Median 1.2291 0.98857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14271000 6620000 7650900 0 0 0 14271000 6620000 7650900 0 0 0 0 0 0 0 0 0 0 0 0 11753 2900 12230 59735 59955 59955 1 GLTAVSNNAGVDNFGLGLLLR IPENLIDALLKTGVKGLTAVSNNAGVDNFG NNAGVDNFGLGLLLRSKQIKRMVSSYVGEN K G L L R S 2 1 3 1 0 0 0 4 0 0 5 0 0 1 0 1 1 0 0 2 0 0 21 0 2100.1328 P55809 P55809 84 104 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 2;3 6.5941E-18 108.59 By matching By MS/MS 1 3 1.5446 1.3083 31.516 3 Median NaN NaN NaN 0 0 Median 1.5446 1.3083 31.516 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7948500 3097400 4851100 90751 56440 34311 7857700 3040900 4816800 0 0 0 0 0 0 0 0 0 0 0 0 11754 2503 12231 59736;59737;59738;59739 59956;59957;59958 59957 3 GLTEQEVETILDK YLSLFIDDKLKKGVKGLTEQEVETILDKAM VKGLTEQEVETILDKAMVLFRFMQEKDVFE K G L D K A 0 0 0 1 0 1 3 1 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1473.7563 Q13618 Q13618 402 414 CUL3 Cullin-3 yes yes 2 0.00067675 79.974 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 1.2497 1.0948 19.032 7 Median 1.1743 1.0948 NaN 1 1 Median 1.3945 1.2197 15.568 2 0 Median 1.3889 1.5166 NaN 1 0 Median 1.1689 1.0139 NaN 1 0 Median 1.5317 1.5782 NaN 1 1 Median 1.2155 1.016 NaN 1 0 Median 34309000 14571000 19738000 5780100 2655800 3124300 13457000 6021000 7436200 10322000 3934400 6387500 2367600 1051700 1316000 1984600 733900 1250700 397650 174550 223100 11755 2831 12232 59740;59741;59742;59743;59744;59745;59746;59747 59959;59960;59961;59962;59963;59964 59959 6 GLTMLDHEQVTPEDPGAQFLIR LGAEIAKNLILAGVKGLTMLDHEQVTPEDP EQVTPEDPGAQFLIRTGSVGRNRAEASLER K G L I R T 1 1 0 2 0 2 2 2 1 1 3 0 1 1 2 0 2 0 0 1 0 0 22 0 2466.2213 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65;A0A590UKA0 Q9UBE0 62 83 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 3 2.8441E-18 103.41 By matching By MS/MS By MS/MS By matching 2 2 2 1 0.6496 0.68182 44.747 7 Median 0.55761 0.55442 21.72 2 0 Median 0.42931 0.3824 81.783 2 0 Median 0.66985 0.72876 6.9446 2 0 Median 0.82962 0.70135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43873000 24761000 19112000 13793000 8371100 5422100 10534000 6088900 4444600 19344000 10205000 9139300 202430 96074 106350 0 0 0 0 0 0 11756 4237 12233;12234 59748;59749;59750;59751;59752;59753;59754 59965;59966;59967;59968;59969;59970 59968 1905 6 GLTPSQIGVILR TSDDVKEQIYKLAKKGLTPSQIGVILRDSH AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K G L L R D 0 1 0 0 0 1 0 2 0 2 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1252.7503 P62277;J3KMX5 P62277 44 55 RPS13 40S ribosomal protein S13 yes no 2 3.353E-06 161.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 3 1 1.0509 0.95912 21.731 14 Median 1.0096 0.9548 4.5361 3 0 Median 1.1428 0.96346 9.2616 3 0 Median 0.9659 0.92803 33.408 3 0 Plateau 1.2736 1.05 NaN 1 0 Median 1.0801 1.1041 11.003 3 0 Median 1.1965 0.93633 NaN 1 0 Median 209160000 105000000 104160000 122800000 63658000 59137000 17925000 8542600 9382700 14223000 7356200 6866900 715560 316870 398690 26205000 12697000 13508000 27294000 12428000 14866000 11757 2580 12235 59755;59756;59757;59758;59759;59760;59761;59762;59763;59764;59765;59766;59767;59768 59971;59972;59973;59974;59975;59976;59977;59978;59979;59980;59981;59982;59983;59984;59985;59986;59987;59988;59989;59990 59972 20 GLTPTGMLPSGVLSGGK FSVLREESESVLTLKGLTPTGMLPSGVLSG TPTGMLPSGVLSGGKQTLQSATVEAIEADE K G L G K Q 0 0 0 0 0 0 0 5 0 0 3 1 1 0 2 2 2 0 0 1 0 0 17 0 1570.8389 Q08209;E7ETC2 Q08209 425 441 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase yes no 2 0.0004598 42.789 By MS/MS 1 0.91168 0.85418 NaN 1 Median 0.91168 0.85418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7175600 3744700 3430800 7175600 3744700 3430800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11758 2735 12236 59769 59991 59991 1 GLTSVINQK ENEVFLSLPCILNARGLTSVINQKLKDDEV CILNARGLTSVINQKLKDDEVAQLKKSADT R G L Q K L 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 958.54475 P07195 P07195 300 308 LDHB L-lactate dehydrogenase B chain yes yes 2 0.00012778 145.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 8 1 2 1 1 1.3234 1.1396 16.561 20 Median 1.348 1.2194 13.788 7 2 Median 1.2938 1.0773 9.522 8 2 Median 1.1307 1.0911 NaN 1 0 Median 1.4377 1.2063 24.718 2 0 Median 1.4493 1.4494 NaN 1 0 Median 0.96501 0.78106 NaN 1 0 Median 1352800000 605380000 747420000 701130000 316660000 384470000 515060000 225090000 289980000 56070000 25799000 30271000 61092000 28141000 32951000 7852300 3653000 4199300 11594000 6037700 5555900 11759 1880 12237 59770;59771;59772;59773;59774;59775;59776;59777;59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791 59992;59993;59994;59995;59996;59997;59998;59999;60000;60001;60002;60003;60004;60005;60006;60007;60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019 60012 28 GLTTTGNSSLNSTSNTK NCTVNTSSVATSSMKGLTTTGNSSLNSTSN TTTGNSSLNSTSNTKVSAVPTNMAAKKTST K G L T K V 0 0 3 0 0 0 0 2 0 0 2 1 0 0 0 4 5 0 0 0 0 0 17 0 1681.8119 Q96KR1 Q96KR1 468 484 ZFR Zinc finger RNA-binding protein yes yes 2 1.3631E-10 105.17 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1172 1.0623 19.986 4 Median NaN NaN NaN 0 0 Median 0.98287 0.86466 NaN 1 0 Median 1.1076 1.2 NaN 1 0 Median 1.5671 1.3219 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1268 0.94039 NaN 1 0 Median 6777400 3436200 3341300 0 0 0 1996700 981120 1015600 3558000 1871800 1686200 608180 270300 337880 0 0 0 614520 312930 301590 11760 3697 12238 59792;59793;59794;59795 60020;60021;60022 60021 3 GLTVDSILQTDDATLGK KDQVTAGAMQRLRARGLTVDSILQTDDATL TVDSILQTDDATLGKLIYPVGFWRSKVKYI R G L G K L 1 0 0 3 0 1 0 2 0 1 3 1 0 0 0 1 3 0 0 1 0 0 17 0 1745.9047 A0A494BZZ6;P78549;H3BRL9 A0A494BZZ6 53 69 NTHL1 Endonuclease III-like protein 1 yes no 2 1.9988E-05 76.522 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.91395 0.86319 13.65 5 Median 0.87612 0.86319 NaN 1 0 Median 0.91395 0.77583 NaN 1 0 Median 0.85342 0.81976 NaN 1 0 Median 1.1083 0.94365 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3109 1.0994 NaN 1 0 Median 9414200 4986800 4427400 778010 564150 213860 391730 206350 185390 6742100 3567000 3175100 285920 134280 151640 0 0 0 1216400 515040 701400 11761 454 12239 59796;59797;59798;59799;59800 60023;60024 60024 2 GLTVPIASIDIPSGWDVEK GDVREPFHSILSVLKGLTVPIASIDIPSGW PIASIDIPSGWDVEKGNAGGIQPDLLISLT K G L E K G 1 0 0 2 0 0 1 2 0 3 1 1 0 0 2 2 1 1 0 2 0 0 19 0 1996.0517 Q8NCW5 Q8NCW5 209 227 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 0.0007068 36.847 By MS/MS 1 0.71551 0.667 NaN 1 Median 0.71551 0.667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9455300 5363200 4092100 9455300 5363200 4092100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11762 3420 12240 59801 60025;60026 60026 2 GLTVQQWDALYTDLPNR AISDMLVIEAILALKGLTVQQWDALYTDLP TVQQWDALYTDLPNRQLKVQVADRRVISTT K G L N R Q 1 1 1 2 0 2 0 1 0 0 3 0 0 0 1 0 2 1 1 1 0 0 17 0 1988.9956 H0Y987;O95394;A0A494C1Q4;J3KN95;A0A494C1E2;H0Y8I3 H0Y987 434 450 PGM3 Phosphoacetylglucosamine mutase yes no 2;3 0.0039626 32.498 By MS/MS By matching 2 1 0.84664 0.69951 9.6725 3 Plateau 0.7642 0.75456 10.713 2 0 Median 0.78719 0.67991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9739700 5293700 4446000 8061300 4341100 3720100 1678400 952550 725850 0 0 0 0 0 0 0 0 0 0 0 0 11763 1165 12241 59802;59803;59804 60027;60028 60027 2 GLTWIAHSR LVFNPSHRSSSILPRGLTWIAHSRHGQTRD SSILPRGLTWIAHSRHGQTRDRVHDRNVKN R G L S R H 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1039.5563 Q7Z3K3;H0YCT3 Q7Z3K3 849 857 POGZ Pogo transposable element with ZNF domain yes no 2 0.010372 48.283 By MS/MS 1 0.77767 0.64721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77767 0.64721 NaN 1 0 Median 2185000 1241100 943950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2185000 1241100 943950 11764 3241 12242 59805 60029 60029 1 GLVAEGHR NPTVDDRGVGQAAIRGLVAEGHRLANVMMG VGQAAIRGLVAEGHRLANVMMGPYRQDLLA R G L H R L 1 1 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 837.4457 P18206 P18206 521 528 VCL Vinculin yes yes 2 0.010382 58.981 By MS/MS 1 1.0219 0.90353 NaN 1 Median NaN NaN NaN 0 0 Median 1.0219 0.90353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 783710 360700 423010 0 0 0 783710 360700 423010 0 0 0 0 0 0 0 0 0 0 0 0 11765 2057 12243 59806 60030;60031;60032;60033 60032 4 GLVASLISVK AYKDPEKNWNRNCVKGLVASLISVKDTSAT RNCVKGLVASLISVKDTSATTALELVAGER K G L V K D 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 2 0 0 10 0 985.61718 O95347 O95347 524 533 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0034408 56.729 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 3 2 2 1.1822 1.0572 13.813 10 Median 1.0902 1.07 NaN 1 0 Median 1.187 1.0371 NaN 1 0 Median 1.2084 1.2978 NaN 1 0 Median 1.1773 1.0445 16.188 3 0 Median 1.2154 1.2655 13.594 2 0 Median 1.1439 0.97381 4.5676 2 0 Median 20533000 9077300 11456000 4072800 1910500 2162300 2656100 1204000 1452100 7245000 3104300 4140700 2890800 1287800 1603000 2965600 1250900 1714700 703280 319770 383510 11766 1766 12244 59807;59808;59809;59810;59811;59812;59813;59814;59815;59816 60034;60035;60036;60037;60038 60034 5 GLVAVITGGASGLGLATAER ______________________________ ITGGASGLGLATAERLVGQGASAVLLDLPN K G L E R L 4 1 0 0 0 0 1 5 0 1 3 0 0 0 0 1 2 0 0 2 0 0 20 0 1812.0105 Q99714;Q5H928 Q99714 10 29 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 2.8857E-08 73.848 By MS/MS By MS/MS By matching By matching By MS/MS 1 3 1 1 2 1.478 1.2379 17.879 8 Median 1.1 1.0419 NaN 1 0 Median 1.3965 1.181 4.5682 3 0 Median NaN NaN NaN 0 0 Median 1.7496 1.4223 NaN 1 0 Median 1.9489 1.8877 NaN 1 0 Median 1.5256 1.2385 3.114 2 0 Median 22690000 9830700 12859000 8375600 3806100 4569500 10734000 4615500 6118800 0 0 0 163320 56818 106500 631120 264450 366670 2785700 1087800 1697900 11767 3764 12245 59817;59818;59819;59820;59821;59822;59823;59824 60039;60040;60041;60042;60043 60040 5 GLVDGGEAVEAR RRRILGLEQQLKETRGLVDGGEAVEARLRD ETRGLVDGGEAVEARLRDKLQRLEAEKQQL R G L A R L 2 1 0 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 2 0 0 12 0 1171.5833 Q9P2M7 Q9P2M7 745 756 CGN Cingulin yes yes 2 0.0017625 77.662 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11768 4226 12246 59825 60044 60044 1 GLVDKLQALTGNEGR VAVVWDKSSPVEALKGLVDKLQALTGNEGR GLVDKLQALTGNEGRVSVENIKQLLQSAHK K G L G R V 1 1 1 1 0 1 1 3 0 0 3 1 0 0 0 0 1 0 0 1 0 0 15 1 1569.8475 H3BUG4;H3BPG7;H3BV90;H3BT65;Q6FI81;H3BQ23 H3BUG4 27 41 CIAPIN1 Anamorsin yes no 3 0.0032172 30.543 By MS/MS By matching 1 1 1.3601 1.3492 11.366 2 Median 1.3647 1.4621 NaN 1 0 Median 1.3555 1.245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7000000 2955600 4044400 6133200 2593000 3540100 866830 362550 504280 0 0 0 0 0 0 0 0 0 0 0 0 11769 1222 12247 59826;59827 60045;60046 60046 2 GLVDRPLALR PFSGSQIPLFQAMKKGLVDRPLALRLLDAQ QAMKKGLVDRPLALRLLDAQLATGGLVCPA K G L L R L 1 2 0 1 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 1 1108.6717 P58107;A0A075B730 P58107 384 393 EPPK1 Epiplakin yes no 2 0.041196 46.158 By matching By MS/MS By matching 2 3 1 1.1778 1.2219 13.271 6 Median 1.1334 1.2219 2.8752 2 0 Median 1.1898 1.1471 17.782 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3105 1.4176 NaN 1 0 Median NaN NaN NaN 0 0 Median 37316000 16383000 20933000 18074000 8127800 9946400 17184000 7525400 9658600 0 0 0 0 0 0 2058200 729850 1328300 0 0 0 11770 2520 12248 59828;59829;59830;59831;59832;59833 60047 60047 1 GLVEDTLR AQLRKASDSELERQKGLVEDTLRQRRQVEE SELERQKGLVEDTLRQRRQVEEEILALKAS K G L L R Q 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 901.4869 Q15149 Q15149 2048 2055 PLEC Plectin yes yes 2 9.8244E-06 162.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.3909 1.2359 51.547 6 Median 1.3323 1.2983 NaN 1 0 Median 1.3331 1.0857 20.97 2 0 Median 1.4521 1.5348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36292 0.37111 NaN 1 1 Median 1.4671 1.2131 NaN 1 0 Median 90696000 43124000 47572000 16344000 6582800 9761600 38455000 15502000 22954000 8849600 3691700 5157900 0 0 0 17716000 13731000 3985400 9329900 3616600 5713300 11771 2933 12249 59834;59835;59836;59837;59838;59839 60048;60049;60050;60051;60052;60053;60054;60055;60056;60057 60053 10 GLVEPVDVVDNADGTQTVNYVPSR KAGVAPLQVKVQGPKGLVEPVDVVDNADGT DNADGTQTVNYVPSREGPYSISVLYGDEEV K G L S R E 1 1 2 3 0 1 1 2 0 0 1 0 0 0 2 1 2 0 1 6 0 0 24 0 2543.2504 P21333;Q60FE5;A0A087WWY3 P21333 1492 1515 FLNA Filamin-A no no 2;3 9.3617E-154 280.4 By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 4 4 3 2 0.77247 0.74289 18.286 19 Median 0.81051 0.73751 5.709 6 0 Linear 0.71469 0.60701 14.919 4 0 Median 0.78063 0.85079 6.707 4 0 Median 0.72601 0.64126 10.96 3 0 Median 0.99294 1.0367 7.7537 2 0 Median NaN NaN NaN 0 0 Median 444260000 247580000 196680000 342510000 190370000 152140000 38538000 22706000 15832000 54972000 30322000 24650000 1413500 781810 631660 6828100 3404100 3424000 0 0 0 11772 2088;3120 12250 59840;59841;59842;59843;59844;59845;59846;59847;59848;59849;59850;59851;59852;59853;59854;59855;59856;59857;59858 60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070;60071;60072;60073;60074;60075;60076;60077;60078;60079;60080;60081;60082;60083;60084;60085;60086;60087 60068 30 GLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK KAGLAPLEVRVLGPRGLVEPVNVVDNGDGT TYTPSQEGPYMVSVKYADEEIPRSPFKVKV R G L V K Y 0 0 2 2 0 1 2 4 1 0 1 1 1 0 3 2 4 0 2 7 0 0 33 0 3488.677 O75369;E7EN95 O75369 1464 1496 FLNB Filamin-B yes no 3 3.9416E-09 56.435 By MS/MS By matching By MS/MS 2 2 1 0.55771 0.55459 17.45 5 Median 0.58793 0.57605 5.3687 2 1 Median 0.53583 0.46794 23.428 2 0 Median 0.54766 0.61009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25772000 17733000 8039300 19279000 13575000 5703900 1846900 1080900 765970 4646100 3076700 1569400 0 0 0 0 0 0 0 0 0 11773 1664 12251 59859;59860;59861;59862;59863 60088;60089;60090 60088 3 GLVFDTLYGNLLK QELLSFAYDSTFPTRGLVFDTLYGNLLKVD TRGLVFDTLYGNLLKVDAYGNLLVCAHGFN R G L L K V 0 0 1 1 0 0 0 2 0 0 4 1 0 1 0 0 1 0 1 1 0 0 13 0 1451.8024 P49902;Q5JUV4;H0YHR8;Q5JUV3 P49902 99 111 NT5C2 Cytosolic purine 5-nucleotidase yes no 2 0.0021996 66.435 By MS/MS 1 0.86049 0.72053 NaN 1 Median NaN NaN NaN 0 0 Median 0.86049 0.72053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12114000 6205100 5909000 0 0 0 12114000 6205100 5909000 0 0 0 0 0 0 0 0 0 0 0 0 11774 2403 12252 59864 60091 60091 1 GLVFLNGK QKLEDAEARERQLEKGLVFLNGKLGRII__ RERQLEKGLVFLNGKLGRII__________ K G L G K L 0 0 1 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 846.49634 L0R8F8 L0R8F8 58 65 SMCR7L yes yes 2 0.0079829 64.776 By MS/MS By MS/MS By matching By matching 2 1 2 2 1.4791 1.2315 22.794 7 Median 1.1213 1.0088 9.2211 2 0 Median 1.4959 1.2315 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8262 1.4482 22.032 2 0 Median 1.1597 1.2192 35.166 2 0 Median NaN NaN NaN 0 0 Median 11744000 5273200 6471100 5460000 2554000 2906000 3551000 1331600 2219400 0 0 0 565230 213330 351890 2168100 1174300 993740 0 0 0 11775 1406 12253 59865;59866;59867;59868;59869;59870;59871 60092;60093;60094;60095 60095 4 GLVGEIIK CERTFIAIKPDGVQRGLVGEIIKRFEQKGF KPDGVQRGLVGEIIKRFEQKGFRLVGLKFM R G L I K R 0 0 0 0 0 0 1 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 827.51165 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028 Q32Q12 44 51 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B no no 2 0.0044851 81.297 By MS/MS By MS/MS By MS/MS By matching By matching 5 5 2 2 1 1.318 1.1678 9.22 15 Median 1.2939 1.1974 6.8666 5 0 Median 1.3717 1.164 15.075 5 0 Median 1.2495 1.1877 5.0232 2 0 Median 1.3687 1.1178 0.73157 2 0 Median NaN NaN NaN 0 0 Median 1.4943 1.1878 NaN 1 0 Median 896000000 378830000 517170000 533670000 225530000 308140000 295930000 125130000 170800000 52907000 22593000 30314000 10121000 4384000 5737500 0 0 0 3376500 1191800 2184700 11776 3008;2018 12254 59872;59873;59874;59875;59876;59877;59878;59879;59880;59881;59882;59883;59884;59885;59886 60096;60097;60098;60099;60100;60101;60102;60103;60104 60100 9 GLVGEIIKR CERTFIAIKPDGVQRGLVGEIIKRFEQKGF PDGVQRGLVGEIIKRFEQKGFRLVGLKFMQ R G L K R F 0 1 0 0 0 0 1 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 1 983.61277 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028 Q32Q12 44 52 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B no no 2 0.00060656 129.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1 1.2195 1.1799 51.244 9 Median 1.2231 1.1799 87.342 3 1 Plateau 1.2028 1.0619 24.532 3 0 Median 1.2336 1.2712 NaN 1 0 Median 1.2814 1.1343 NaN 1 0 Median 1.1377 1.2781 NaN 1 1 Median NaN NaN NaN 0 0 Median 1108400000 482060000 626360000 627880000 275490000 352390000 423080000 181090000 241990000 53405000 23828000 29577000 2871100 1119800 1751400 1191600 542280 649350 0 0 0 11777 3008;2018 12255 59887;59888;59889;59890;59891;59892;59893;59894;59895 60105;60106;60107;60108;60109;60110;60111;60112;60113;60114;60115;60116;60117;60118;60119;60120;60121;60122 60111 18 GLVGIEFK PVSNLRLPVEEAYKRGLVGIEFKEKLLSAE VEEAYKRGLVGIEFKEKLLSAERAVTGYND R G L F K E 0 0 0 0 0 0 1 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 861.496 P15924 P15924 2319 2326 DSP Desmoplakin yes yes 2 0.0067369 69.998 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 3 2 3 1 3 0.90892 0.90652 22.083 15 Median 0.76755 0.76359 9.686 3 0 Median 1.0887 0.93474 4.166 3 0 Median 0.58373 0.64026 56.511 2 0 Median 0.82569 0.74226 21.389 3 0 Median 0.90892 0.95308 NaN 1 1 Median 1.1046 0.9497 9.7734 3 0 Plateau 33032000 17995000 15037000 8794400 5056700 3737700 9990500 4700200 5290300 6230100 3898500 2331600 2022400 1133500 888920 4828100 2638000 2190100 1166600 567820 598780 11778 2021 12256 59896;59897;59898;59899;59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910 60123;60124;60125;60126;60127 60124 5 GLVGNPLPSVR VNALLPTETFIPVIRGLVGNPLPSVRRKAL PVIRGLVGNPLPSVRRKALDLLNNKLQQNI R G L V R R 0 1 1 0 0 0 0 2 0 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1107.64 Q9H583;Q5T3Q7 Q9H583 1606 1616 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00015601 82.287 By matching By matching By matching By MS/MS By matching 1 1 1 2 1 0.9301 0.90079 8.9519 6 Median NaN NaN NaN 0 0 Median 0.92389 0.78967 NaN 1 0 Median 0.93635 1.0268 NaN 1 0 Median 1.0481 0.92578 NaN 1 0 Median 0.866 0.90079 1.6007 2 0 Median 1.0332 0.83986 NaN 1 0 Median 31029000 15815000 15214000 0 0 0 809770 365870 443900 7277200 3892000 3385200 900400 392460 507950 19669000 9954000 9714800 2372800 1211000 1161800 11779 3086 12257 59911;59912;59913;59914;59915;59916 60128;60129 60128 2 GLVHAAGPGQDSGSQAGSPPTR SRQQRDLHNLMVDLRGLVHAAGPGQDSGSQ PGQDSGSQAGSPPTRDRDVDVLSAALKEQL R G L T R D 3 1 0 1 0 2 0 5 1 0 1 0 0 0 3 3 1 0 0 1 0 0 22 0 2045.9879 Q96ER9 Q96ER9 271 292 CCDC51 Coiled-coil domain-containing protein 51 yes yes 3 4.9743E-08 61.181 By MS/MS By MS/MS 1 2 0.89154 0.77157 21.145 3 Median 0.63236 0.62988 NaN 1 0 Median 0.99571 0.86123 15.548 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10334000 5201600 5132500 3449500 1841900 1607600 6884700 3359800 3524900 0 0 0 0 0 0 0 0 0 0 0 0 11780 3640 12258 59917;59918;59919 60130;60131;60132;60133;60134 60133 5 GLVLDHGAR MEMKHKSETDTSLIRGLVLDHGARHPDMKK DTSLIRGLVLDHGARHPDMKKRVEDAYILT R G L A R H 1 1 0 1 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 936.51411 P40227 P40227 209 217 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.00093857 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.2186 1.0809 23.97 7 Median 1.0942 1.0639 2.2367 2 0 Median 1.1041 0.93985 15.839 2 0 Median 1.2186 1.2859 NaN 1 0 Median 1.3546 1.1778 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1259 1.824 NaN 1 1 Median 75797000 33913000 41885000 17538000 7970800 9567200 55623000 24955000 30668000 1241100 549010 692070 549240 218600 330640 0 0 0 845970 219700 626260 11781 2285 12259 59920;59921;59922;59923;59924;59925;59926 60135;60136;60137;60138;60139;60140;60141;60142;60143;60144;60145 60141 11 GLVLGIYSK RRFGSRSLSTADMTKGLVLGIYSKEKEDDV TADMTKGLVLGIYSKEKEDDVPQFTSAGEN K G L S K E 0 0 0 0 0 0 0 2 0 1 2 1 0 0 0 1 0 0 1 1 0 0 9 0 948.56442 P28838;H0Y983 P28838 35 43 LAP3 Cytosol aminopeptidase yes no 2 0.0044715 60.59 By MS/MS By matching By matching By matching By matching 3 3 3 2 1 1.2953 1.1734 19.39 12 Median 1.2347 1.1472 10.748 3 0 Plateau 1.4714 1.2156 15.991 3 0 Median 1.3175 1.3391 39.363 3 0 Median 1.4211 1.1165 4.0369 2 0 Median 1.184 1.2807 NaN 1 0 Median NaN NaN NaN 0 0 Median 70682000 32441000 38241000 13291000 6298100 6993300 35868000 16550000 19318000 4425800 1945000 2480900 3798600 1669700 2128900 13298000 5977900 7320300 0 0 0 11782 2167 12260 59927;59928;59929;59930;59931;59932;59933;59934;59935;59936;59937;59938 60146 60146 1 GLVLGPIHK GLKGRLDYLSSLKVKGLVLGPIHKNQKDDV SSLKVKGLVLGPIHKNQKDDVAQTDLLQID K G L H K N 0 0 0 0 0 0 0 2 1 1 2 1 0 0 1 0 0 0 0 1 0 0 9 0 932.58074 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2 F5GZS6 227 235 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.0029572 68.422 By MS/MS By MS/MS 2 2 0.90523 0.8334 36.736 4 Median 1.2087 1.136 35.729 2 0 Median 0.80631 0.69279 18.051 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23189000 11400000 11789000 10439000 4242300 6196400 12751000 7158100 5592400 0 0 0 0 0 0 0 0 0 0 0 0 11783 1016 12261 59939;59940;59941;59942 60147;60148;60149;60150;60151;60152 60152 6 GLVLLRPPASLQYR TGLLDMLSSQPAAQRGLVLLRPPASLQYRF RGLVLLRPPASLQYRFARIAIEV_______ R G L Y R F 1 2 0 0 0 1 0 1 0 0 4 0 0 0 2 1 0 0 1 1 0 0 14 1 1581.9355 Q99575 Q99575 1003 1016 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 3 0.071184 11.27 By matching By matching By MS/MS 1 1 1 0.8274 1.0385 13.355 3 Plateau 0.79023 0.87796 NaN 1 0 Median 0.8274 0.79769 NaN 1 0 Median 0.85391 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3927200 1997300 1929900 993370 441860 551510 645670 387460 258210 2288100 1168000 1120200 0 0 0 0 0 0 0 0 0 11784 3754 12262 59943;59944;59945 60153 60153 1 GLVLPVGGGSAPGPLQSK PTDVSQDPRHMVLVRGLVLPVGGGSAPGPL LPVGGGSAPGPLQSKQPVPLPPAAPSGATL R G L S K Q 1 0 0 0 0 1 0 5 0 0 3 1 0 0 3 2 0 0 0 2 0 0 18 0 1632.9199 B9TX33;M0QZQ2;Q71SY5 B9TX33 225 242 MED25 Mediator of RNA polymerase II transcription subunit 25 yes no 2 4.9607E-06 76.073 By MS/MS By MS/MS By matching 1 1 1 0.51065 0.56226 20.965 3 Median 0.40736 0.40102 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51065 0.56226 NaN 1 0 Median 0.66213 0.5887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6191100 3785100 2406000 2081000 1236900 844180 0 0 0 3918200 2442900 1475300 191920 105360 86563 0 0 0 0 0 0 11785 657 12263 59946;59947;59948 60154;60155;60156 60155 3 GLVLQLIQSYQR LEDIFQQEFSTPSRKGLVLQLIQSYQRMPG SRKGLVLQLIQSYQRMPGNAMVRGFRVAYK K G L Q R M 0 1 0 0 0 3 0 1 0 1 3 0 0 0 0 1 0 0 1 1 0 0 12 0 1416.8089 Q9H4L4;A0A087X0R7;J3QL36 Q9H4L4 358 369 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 yes no 2 0.00051621 76.465 By MS/MS By MS/MS By matching 1 2 2 1.2467 1.189 6.2478 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0275 1.1003 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2146 1.2338 4.7253 2 0 Median 1.3507 1.1441 5.4439 2 0 Median 6924300 3202000 3722300 0 0 0 0 0 0 2495000 1238200 1256900 0 0 0 3175200 1511800 1663400 1254100 452080 801980 11786 3966 12264 59949;59950;59951;59952;59953 60157;60158;60159;60160 60158 4 GLVLVPTK LHRKATGPVVEQAVRGLVLVPTKELARQAQ VVEQAVRGLVLVPTKELARQAQSMIQQLAT R G L T K E 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 0 0 2 0 0 8 0 825.53239 Q9NY93;G3V0G3;H7C3E9;F8WDT8 Q9NY93 85 92 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.022427 65.252 By MS/MS 1 1.1122 1.0602 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1122 1.0602 NaN 1 1 Median NaN NaN NaN 0 0 Median 3982200 1645700 2336500 0 0 0 0 0 0 0 0 0 0 0 0 3982200 1645700 2336500 0 0 0 11787 4173 12265 59954 60161 60161 1 GLVMVKPGSIKPHQK LGALVRGLKREDLRRGLVMVKPGSIKPHQK GLVMVKPGSIKPHQKVEAQVYILSKEEGGR R G L Q K V 0 0 0 0 0 1 0 2 1 1 1 3 1 0 2 1 0 0 0 2 0 0 15 2 1617.9389 P49411 P49411 337 351 TUFM Elongation factor Tu, mitochondrial yes yes 2;3;4 1.5566E-13 106.29 By MS/MS By MS/MS By MS/MS By MS/MS 7 4 2 2 0.81991 0.89933 29.044 14 Median 0.799 0.78229 22.042 6 0 Median 1.0732 1.0391 33.283 4 0 Median 0.76957 0.90267 8.2684 2 0 Median 0.95917 0.92198 21.493 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60138000 31066000 29072000 31228000 17123000 14105000 15342000 6621500 8720600 5794300 3215900 2578300 7774000 4105500 3668500 0 0 0 0 0 0 11788 2382 12266 59955;59956;59957;59958;59959;59960;59961;59962;59963;59964;59965;59966;59967;59968;59969 60162;60163;60164;60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175;60176;60177;60178;60179;60180;60181;60182 60169 21 GLVNDLAR QHNGMNNIIRLFLKKGLVNDLARVPHSLDL IRLFLKKGLVNDLARVPHSLDLSSPNMANT K G L A R V 1 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 856.47667 Q7Z6Z7 Q7Z6Z7 2220 2227 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 3.031E-06 122.79 By MS/MS By MS/MS 1 2 1.1737 0.93908 23.504 3 Median 0.78132 0.76217 NaN 1 1 Median 1.3036 1.0697 18.413 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39295000 18888000 20407000 14889000 8433500 6455400 24406000 10454000 13952000 0 0 0 0 0 0 0 0 0 0 0 0 11789 3253 12267 59970;59971;59972 60183;60184;60185;60186 60184 4 GLVNLQSGAPKPEENPSLNIQFK WDVGKITPQKLPSLKGLVNLQSGAPKPEEN APKPEENPSLNIQFKIQQLAISGLKVNRLD K G L F K I 1 0 3 0 0 2 2 2 0 1 3 2 0 1 3 2 0 0 0 1 0 0 23 1 2479.3071 Q9Y2T2 Q9Y2T2 356 378 AP3M1 AP-3 complex subunit mu-1 yes yes 3 0.00012847 29.118 By matching By MS/MS By matching 1 1 1 0.85787 0.81482 40.741 3 Median 0.57055 0.54685 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.177 1.2351 NaN 1 0 Median 0.85787 0.81482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13922000 7379600 6542900 6655800 4173200 2482600 0 0 0 5214700 2138400 3076300 2051900 1067900 983990 0 0 0 0 0 0 11790 4391 12268 59973;59974;59975 60187;60188 60187 2 GLVPEDDTK NITLQEQIEAIHKAKGLVPEDDTKEKIGPS AIHKAKGLVPEDDTKEKIGPSKPNEIPQQP K G L T K E 0 0 0 2 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 972.47639 Q15459;H7C1L2 Q15459 534 542 SF3A1 Splicing factor 3A subunit 1 yes no 2 0.0074886 51.346 By MS/MS By MS/MS By matching 1 2 2 0.99037 1.0549 23.405 5 Median NaN NaN NaN 0 0 Median 0.86413 0.74141 NaN 1 0 Median 1.0066 1.0761 1.4316 2 0 Median 0.974 0.83708 32.713 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13165000 6660900 6504500 0 0 0 4379100 2446800 1932300 4990300 2390000 2600300 3796000 1824100 1971900 0 0 0 0 0 0 11791 2954 12269 59976;59977;59978;59979;59980 60189;60190 60189 2 GLVPEDDTKEK NITLQEQIEAIHKAKGLVPEDDTKEKIGPS HKAKGLVPEDDTKEKIGPSKPNEIPQQPPP K G L E K I 0 0 0 2 0 0 2 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1229.6139 Q15459;H7C1L2 Q15459 534 544 SF3A1 Splicing factor 3A subunit 1 yes no 2;3 0.00084293 56.729 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 6 3 0.86761 0.96672 17.412 15 Median 0.91715 0.97169 NaN 1 0 Median 0.59113 0.56142 NaN 1 0 Median 0.85027 0.97263 0.86138 2 0 Median 0.88683 0.84477 22.385 2 0 Median 0.86269 0.9598 13.241 6 0 Median 1.0218 0.91068 12.147 3 0 Median 46306000 23998000 22308000 1240500 650980 589550 6155500 2986900 3168600 6499900 3324600 3175200 2763900 1375900 1388000 27363000 14641000 12722000 2283400 1018900 1264400 11792 2954 12270 59981;59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992;59993;59994;59995 60191;60192;60193;60194;60195;60196;60197;60198;60199;60200;60201 60198 11 GLVQALGLSNFNSR HYKETWKALEALVAKGLVQALGLSNFNSRQ KGLVQALGLSNFNSRQIDDILSVASVRPAV K G L S R Q 1 1 2 0 0 1 0 2 0 0 3 0 0 1 0 2 0 0 0 1 0 0 14 0 1474.7892 P14550 P14550 154 167 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 2 2.5062E-08 107.06 By MS/MS By MS/MS 2 2 0.88599 0.80857 17.753 4 Median 0.75016 0.73075 4.9265 2 0 Median 1.1228 0.95548 14.222 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27455000 15102000 12353000 19007000 10982000 8025500 8447800 4120600 4327200 0 0 0 0 0 0 0 0 0 0 0 0 11793 2004 12271 59996;59997;59998;59999 60202;60203;60204;60205;60206;60207;60208 60206 7 GLVQALQTK LSERAALQEELQLCKGLVQALQTKVTQQGL ELQLCKGLVQALQTKVTQQGLKMVVPGLDG K G L T K V 1 0 0 0 0 2 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 956.56548 P49327;A0A0U1RQF0 P49327 1143 1151 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00056457 113.91 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1.4913 1.3074 33.343 8 Median 1.1111 1.0591 17.185 3 0 Median 1.5216 1.3456 7.9232 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6038 2.742 NaN 1 0 Median 1.9315 1.6552 NaN 1 1 Median 229610000 96552000 133060000 81531000 39015000 42516000 142870000 55913000 86959000 0 0 0 0 0 0 3138900 847350 2291600 2070600 776610 1294000 11794 2377 12272 60000;60001;60002;60003;60004;60005;60006;60007 60209;60210;60211;60212;60213;60214;60215;60216;60217;60218;60219 60210 11 GLVSSDELAK LSDFRDLMSWINGIRGLVSSDELAKDVTGA INGIRGLVSSDELAKDVTGAEALLERHQEH R G L A K D 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1017.5342 A0A0D9SF54;Q13813 Q13813 1360 1369 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00038123 89.355 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1 1 1.1803 1.0883 20.397 9 Median 1.2406 1.195 NaN 1 0 Median 1.3354 1.1959 26.235 3 0 Median 0.88753 0.97509 NaN 1 0 Median 1.0453 0.98895 5.3092 2 0 Median 1.0398 1.0883 NaN 1 0 Median 1.1803 1.0105 NaN 1 0 Median 184790000 83322000 101470000 6679800 2839800 3840000 70011000 28560000 41451000 43734000 22376000 21358000 28954000 13707000 15246000 9389600 4598100 4791600 26020000 11241000 14779000 11795 264;2838 12273 60008;60009;60010;60011;60012;60013;60014;60015;60016 60220;60221;60222;60223;60224;60225;60226;60227;60228;60229;60230;60231;60232;60233 60222 14 GLVSSDELAKDVTGAEALLER LSDFRDLMSWINGIRGLVSSDELAKDVTGA ELAKDVTGAEALLERHQEHRTEIDARAGTF R G L E R H 3 1 0 2 0 0 3 2 0 0 4 1 0 0 0 2 1 0 0 2 0 0 21 1 2172.1274 A0A0D9SF54;Q13813 Q13813 1360 1380 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.030085 13.731 By matching By matching By MS/MS 1 1 1 1.0022 1.0829 16.879 3 Plateau 0.83991 0.83127 NaN 1 0 Median 1.193 1.1645 NaN 1 0 Median 0.84182 0.99912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2119300 1065800 1053500 354430 202680 151750 892090 399850 492240 872790 463240 409560 0 0 0 0 0 0 0 0 0 11796 264;2838 12274 60017;60018;60019 60234;60235 60234 2 GLVTTAIIQR PVEGTVIESFTDKGRGLVTTAIIQRGTLRK TDKGRGLVTTAIIQRGTLRKGSVLVAGKCW R G L Q R G 1 1 0 0 0 1 0 1 0 2 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1070.6448 P46199;H7C213 P46199 369 378 MTIF2 Translation initiation factor IF-2, mitochondrial yes no 2 0.0028462 71.379 By MS/MS By matching By MS/MS 1 1 3 1.5474 1.4807 19.182 5 Median 1.5408 1.4807 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3386 1.4043 NaN 1 0 Median 2.3501 2.0366 24.839 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11520000 4688900 6831500 4411600 2035800 2375800 0 0 0 4940900 1941600 2999300 2167900 711520 1456400 0 0 0 0 0 0 11797 2342 12275 60020;60021;60022;60023;60024 60236;60237 60236 1 GLVVDMDGFEEER YGFPVDLTGLIAEEKGLVVDMDGFEEERKL EKGLVVDMDGFEEERKLAQLKSQGKGAGGE K G L E R K 0 1 0 2 0 0 3 2 0 0 1 0 1 1 0 0 0 0 0 2 0 0 13 0 1494.6661 P49588 P49588 433 445 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 2.0999E-05 94.297 By MS/MS By matching 1 1 0.98404 0.92572 12.507 2 Median 1.0458 1.0113 NaN 1 0 Median 0.9259 0.84737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4565100 2165800 2399400 4013600 1830200 2183400 551560 335530 216030 0 0 0 0 0 0 0 0 0 0 0 0 11798 2385 12276 60025;60026 60238;60239 60239 2 GLVVPSGGGR VGFESDTGGAFKGFKGLVVPSGGGRFSGFG FKGFKGLVVPSGGGRFSGFGSGAGGKPLEG K G L G R F 0 1 0 0 0 0 0 4 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 897.50321 Q9UKX7;B0QY21 Q9UKX7 63 72 NUP50 Nuclear pore complex protein Nup50 yes no 2 0.015201 55.531 By MS/MS By MS/MS 1 1 0.86451 0.82025 13.899 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86444 0.90496 NaN 1 1 Median 0.86459 0.74347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5113600 2670300 2443300 0 0 0 0 0 0 3046000 1405400 1640600 2067600 1264900 802720 0 0 0 0 0 0 11799 4317 12277 60027;60028 60240;60241 60240 2 GLVVPVIR YRDYIDISVAVATPRGLVVPVIRNVEAMNF VAVATPRGLVVPVIRNVEAMNFADIERTIT R G L I R N 0 1 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 8 0 851.55927 P36957 P36957 326 333 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 0.0029621 102.98 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1.1191 1.0372 18.859 7 Median 0.88189 0.85089 NaN 1 0 Median 1.1814 0.99945 NaN 1 0 Median 0.98688 0.94683 13.941 2 0 Median 1.4467 1.2461 NaN 1 0 Median 1.0309 1.0372 NaN 1 0 Median 1.664 1.4324 NaN 1 0 Median 41636000 20541000 21096000 8211200 4636800 3574400 5877500 2774200 3103300 12608000 6948400 5659500 12203000 4896800 7306300 2072900 998240 1074700 663520 286050 377480 11800 2265 12278 60029;60030;60031;60032;60033;60034;60035 60242;60243;60244;60245 60242 4 GLVVTDLK LLEKSQFSDKPVQDRGLVVTDLKAESVVLE DKPVQDRGLVVTDLKAESVVLEHRSYCSAK R G L L K A 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 8 0 843.50657 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0;E9PKF1 Q9BWS9 49 56 CHID1 Chitinase domain-containing protein 1 yes no 2 0.0044009 81.784 By matching By MS/MS By MS/MS 2 1 1 1.2286 1.1504 42.235 4 Median NaN NaN NaN 0 0 Median 0.9755 0.82778 65.317 2 0 Median 1.1031 1.1398 NaN 1 0 Median 1.3683 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25851000 10807000 15044000 0 0 0 7550200 2100000 5450200 13570000 6582200 6987300 4731300 2124500 2606800 0 0 0 0 0 0 11801 3874 12279 60036;60037;60038;60039 60246;60247;60248;60249 60246 4 GLVVTDLKAESVVLEHR LLEKSQFSDKPVQDRGLVVTDLKAESVVLE VVTDLKAESVVLEHRSYCSAKARDRHFAGD R G L H R S 1 1 0 1 0 0 2 1 1 0 3 1 0 0 0 1 1 0 0 4 0 0 17 1 1864.0418 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0;E9PKF1 Q9BWS9 49 65 CHID1 Chitinase domain-containing protein 1 yes no 3 1.3895E-05 50.608 By MS/MS By matching 1 1 1.4892 1.4862 4.2778 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.269 1.4419 NaN 1 0 Median 1.7476 1.5318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6458900 2788500 3670400 0 0 0 0 0 0 4962200 2191300 2771000 1496600 597220 899410 0 0 0 0 0 0 11802 3874 12280 60040;60041 60250;60251 60251 2 GLVYETSVLDPDEGIR QITVDMMYGGMRGMKGLVYETSVLDPDEGI LVYETSVLDPDEGIRFRGFSIPECQKLLPK K G L I R F 0 1 0 2 0 0 2 2 0 1 2 0 0 0 1 1 1 0 1 2 0 0 16 0 1761.8785 O75390;B4DJV2;A0A0C4DGI3;H0YH82;F8VPA1;F8W4S1;F8W1S4;F8VTT8;F8VPF9;F8VX68;F8VRP1;F8VX07;F8VZK9;F8W642 O75390 77 92 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 4.8589E-10 120.96 By MS/MS By MS/MS By MS/MS 1 2 1 0.99071 0.90954 6.9644 4 Median 0.87476 0.82217 NaN 1 0 Median 1.1083 0.9492 1.036 2 0 Median 0.90913 0.87794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134310000 67613000 66696000 31088000 16156000 14932000 24365000 10792000 13573000 78856000 40665000 38191000 0 0 0 0 0 0 0 0 0 11803 594 12281 60042;60043;60044;60045 60252;60253;60254;60255;60256;60257;60258;60259;60260 60254 9 GLWHEEMK FQIVNPHLLKDLTERGLWHEEMKNQIIACN LKDLTERGLWHEEMKNQIIACNGSIQSIPE R G L M K N 0 0 0 0 0 0 2 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 8 0 1028.475 P23921;E9PL69 P23921 649 656 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 0.031031 38.792 By MS/MS 1 1.1823 1.1231 NaN 1 Median 1.1823 1.1231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4272800 1929400 2343400 4272800 1929400 2343400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11804 2121 12282 60046 60261;60262 60261 2 GLYCYELDEK DAFTDLKNGSLFAFRGLYCYELDEKAVRPG LFAFRGLYCYELDEKAVRPGYPKLIRDVWG R G L E K A 0 0 0 1 1 0 2 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1288.5646 CON__Q3ZBS7 CON__Q3ZBS7 173 182 yes yes 2 0.0040128 68.735 By MS/MS 2 0.20882 0.20726 123.74 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20882 0.20726 123.74 2 2 Median NaN NaN NaN 0 0 Median 16870000 13390000 3480000 0 0 0 0 0 0 0 0 0 0 0 0 16870000 13390000 3480000 0 0 0 + 11805 783 12283 60047;60048 60263;60264 60263 2 GLYNEHTVDR KIEARIDEVVSRAEKGLYNEHTVDRAPLRN SRAEKGLYNEHTVDRAPLRNKYFFGEGYTY K G L D R A 0 1 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1202.568 Q6P6C2 Q6P6C2 117 126 ALKBH5 RNA demethylase ALKBH5 yes yes 3 0.00011169 76.228 By MS/MS By MS/MS 2 2 0.97437 0.86655 10.751 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85121 0.86146 17.463 2 0 Median 1.0098 0.86655 6.4387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4316300 2116100 2200100 0 0 0 0 0 0 2017300 1042500 974790 2299000 1073600 1225400 0 0 0 0 0 0 11806 3163 12284 60049;60050;60051;60052 60265;60266;60267 60266 3 GLYNEHTVDRAPLR KIEARIDEVVSRAEKGLYNEHTVDRAPLRN KGLYNEHTVDRAPLRNKYFFGEGYTYGAQL K G L L R N 1 2 1 1 0 0 1 1 1 0 2 0 0 0 1 0 1 0 1 1 0 0 14 1 1639.8431 Q6P6C2 Q6P6C2 117 130 ALKBH5 RNA demethylase ALKBH5 yes yes 3;4 0.0050151 49.929 By matching By MS/MS 1 3 1.0917 0.98925 42.568 4 Median NaN NaN NaN 0 0 Median 1.7198 1.6143 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0503 0.92453 32.096 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10834000 5130200 5704000 0 0 0 1628600 542340 1086300 0 0 0 9205600 4587900 4617700 0 0 0 0 0 0 11807 3163 12285 60053;60054;60055;60056 60268;60269 60269 0 GLYPAPLK QVYKKVEEKVRKQTKGLYPAPLKIIDVVKT KVRKQTKGLYPAPLKIIDVVKTGIEQGSDA K G L L K I 1 0 0 0 0 0 0 1 0 0 2 1 0 0 2 0 0 0 1 0 0 0 8 0 857.50109 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 296 303 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.052986 50.966 By MS/MS 1 0.64068 0.59213 NaN 1 Median 0.64068 0.59213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6652400 4360900 2291600 6652400 4360900 2291600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11808 1180 12286 60057 60270 60270 1 GMAAAGNYAWVNR ACARIASPEGQDYLKGMAAAGNYAWVNRSS LKGMAAAGNYAWVNRSSMTFLTRQAFAKVF K G M N R S 4 1 2 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 1 1 0 0 13 0 1379.6405 Q9Y3I0 Q9Y3I0 309 321 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 8.2971E-12 172.21 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.1324 1.0157 5.3473 7 Median 1.0913 1.0572 6.783 2 0 Median 1.1611 0.98927 3.7217 2 0 Median 1.0706 1.0548 NaN 1 0 Median 1.2221 1.0463 7.4819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101310000 48576000 52738000 29497000 13571000 15926000 4725200 2139800 2585400 47681000 24447000 23234000 19412000 8418800 10993000 0 0 0 0 0 0 11809 4430 12287;12288 60058;60059;60060;60061;60062;60063;60064;60065;60066 60271;60272;60273;60274;60275;60276;60277;60278;60279;60280;60281;60282 60279 1978 12 GMAFLHTLEPLIPR VDQSQAVKFALDMARGMAFLHTLEPLIPRH RGMAFLHTLEPLIPRHALNSRSVMIDEDMT R G M P R H 1 1 0 0 0 0 1 1 1 1 3 0 1 1 2 0 1 0 0 0 0 0 14 0 1593.8701 Q13418;A0A0A0MTH3 Q13418 304 317 ILK Integrin-linked protein kinase yes no 2;3 0.0017292 60.434 By MS/MS By matching By matching 2 1 3 0.61473 0.56924 55.759 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53297 0.5338 26.103 2 1 Median 0.41728 0.35755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0985 0.90312 59.544 3 0 Median 18682000 11246000 7436300 0 0 0 0 0 0 11103000 6867700 4235700 5623100 3256900 2366200 0 0 0 1955300 1120900 834360 11810 190 12289 60067;60068;60069;60070;60071;60072 60283;60284 60284 2 GMAFTLQER KEKGKPLMLNPRTNKGMAFTLQERQMLGLQ NPRTNKGMAFTLQERQMLGLQGLLPPKIET K G M E R Q 1 1 0 0 0 1 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 9 0 1051.5121 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PRS2;A0A1W2PRY9;A0A1W2PQH4;A0A1W2PRH1 A0A1W2PPH1 37 45 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.00063785 107.9 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 3 1 1 1.11 1.0696 39.963 8 Median 1.1461 1.0843 NaN 1 0 Median 1.7435 1.5105 NaN 1 0 Median 1.075 1.0747 NaN 1 0 Median 1.434 1.1299 57.272 3 0 Plateau 1.0411 1.0645 NaN 1 0 Median 1.0192 0.79409 NaN 1 0 Median 41653000 19567000 22086000 18232000 9101000 9131200 4528900 1611100 2917800 9644200 4490900 5153300 3775900 1717000 2059000 4041700 2006400 2035300 1430400 640680 789770 11811 337 12290 60073;60074;60075;60076;60077;60078;60079;60080 60285;60286;60287;60288 60285 4 GMDADPYNPVLPTNR FKQGKYDEAIDCYTKGMDADPYNPVLPTNR GMDADPYNPVLPTNRASAYFRLKKFAVAES K G M N R A 1 1 2 2 0 0 0 1 0 0 1 0 1 0 3 0 1 0 1 1 0 0 15 0 1658.7723 Q9H6T3 Q9H6T3 159 173 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 0.00011264 79.82 By MS/MS By matching 1 1 0.68271 0.61356 1.1875 2 Median 0.65327 0.61874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71348 0.60843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8027400 4495400 3532000 7469800 4154000 3315900 0 0 0 0 0 0 557570 341450 216120 0 0 0 0 0 0 11812 3978 12291 60081;60082 60289;60290 60290 2 GMDHFLYGLSDEMK SVFSTVDAPVAPSDKGMDHFLYGLSDEMKQ KGMDHFLYGLSDEMKQAHREQLFAVSHDKL K G M M K Q 0 0 0 2 0 0 1 2 1 0 2 1 2 1 0 1 0 0 1 0 0 0 14 0 1641.7167 Q5JRX3;A0A0A0MRX9 Q5JRX3 973 986 PITRM1 Presequence protease, mitochondrial yes no 3 0.059478 11.44 By MS/MS By matching By matching 1 1 1 0.96676 0.97781 11.417 3 Median 0.96676 0.96011 NaN 1 0 Median 1.3367 1.18 NaN 1 0 Median 0.94037 0.97781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4075900 1996200 2079700 2319900 1146800 1173100 605490 258640 346850 1150500 590770 559770 0 0 0 0 0 0 0 0 0 11813 3050 12292 60083;60084;60085 60291;60292 60291 2 GMDKLIVDGR CQVIAEAVRTTLGPRGMDKLIVDGRGKATI TLGPRGMDKLIVDGRGKATISNDGATILKL R G M G R G 0 1 0 2 0 0 0 2 0 1 1 1 1 0 0 0 0 0 0 1 0 0 10 1 1102.5805 Q99832;F8WBP8;A0A0D9SG95 Q99832 44 53 CCT7 T-complex protein 1 subunit eta yes no 2 0.0033636 106.88 By MS/MS 1 1.1099 1.1118 NaN 1 Median 1.1099 1.1118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22985000 9453900 13531000 22985000 9453900 13531000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11814 3771 12293 60086 60293 60293 1 GMDLQPGNALKR EVRDVRPYIVGAVVRGMDLQPGNALKRFLT VVRGMDLQPGNALKRFLTSQTKLHEDLCEK R G M K R F 1 1 1 1 0 1 0 2 0 0 2 1 1 0 1 0 0 0 0 0 0 0 12 1 1298.6765 Q8N1G4 Q8N1G4 343 354 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 0.0025884 55.401 By MS/MS 1 2.4129 2.419 NaN 1 Median 2.4129 2.419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14987000 3833200 11154000 14987000 3833200 11154000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11815 3359 12294 60087 60294 60294 1 GMDVYGYLLAR LKFEQAQMLDPYLIKGMDVYGYLLAREGRL YLIKGMDVYGYLLAREGRLEDVENLGCRLF K G M A R E 1 1 0 1 0 0 0 2 0 0 2 0 1 0 0 0 0 0 2 1 0 0 11 0 1256.6223 Q9UJX3 Q9UJX3 307 317 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.0075749 42.109 By MS/MS By matching By matching 2 1 1 0.98044 0.98507 17.697 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98044 0.98586 17.207 2 0 Median NaN NaN NaN 0 0 Median 1.1048 1.1116 NaN 1 0 Median 0.88654 0.78319 NaN 1 0 Median 5675600 2810700 2864900 0 0 0 0 0 0 5196100 2587000 2609000 0 0 0 282910 144080 138830 196680 79622 117060 11816 4301 12295 60088;60089;60090;60091 60295;60296 60295 2 GMEELIPLVNK ______________________________ MGNRGMEELIPLVNKLQDAFSSIGQSCHLD R G M N K L 0 0 1 0 0 0 2 1 0 1 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1241.669 P50570 P50570 5 15 DNM2 Dynamin-2 yes yes 2 0.00037796 70.919 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.87746 0.85392 23.761 4 Median 0.75253 0.74448 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85548 0.93416 NaN 1 0 Median 0.9 0.78058 NaN 1 0 Median 1.222 1.258 NaN 1 0 Median NaN NaN NaN 0 0 Median 15325000 7650200 7674800 3055700 1727200 1328500 0 0 0 10293000 5177600 5115000 185400 97864 87534 1791300 647570 1143700 0 0 0 11817 2417 12296 60092;60093;60094;60095 60297;60298;60299;60300 60299 4 GMELSVLDSLNAR TVAIVLENRSSSILKGMELSVLDSLNARMA LKGMELSVLDSLNARMARPQGSSVHDGVPV K G M A R M 1 1 1 1 0 0 1 1 0 0 3 0 1 0 0 2 0 0 0 1 0 0 13 0 1403.7079 O14617;A0A2R8Y611;K7ERW8 O14617 963 975 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.00012318 84.17 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.2665 1.1667 44.476 6 Median 1.1031 1.1072 17.095 2 0 Median 1.1543 0.97805 15.241 2 1 Median 2.4156 2.9466 NaN 1 0 Median 1.6162 1.6551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9370100 4271800 5098200 2440400 1203500 1236900 6223600 2770700 3452900 465060 183030 282040 241030 114580 126460 0 0 0 0 0 0 11818 1485 12297 60096;60097;60098;60099;60100;60101 60301;60302;60303 60303 3 GMESLEDTFVSQANALQR IDSGKMKEKRYDASKGMESLEDTFVSQANA SLEDTFVSQANALQRKGRAGRVASGVCFHL K G M Q R K 2 1 1 1 0 2 2 1 0 0 2 0 1 1 0 2 1 0 0 1 0 0 18 0 1994.9368 Q6P158;H7C109 Q6P158 944 961 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 2 0.00031234 40.577 By MS/MS 1 0.95772 0.96173 NaN 1 Median 0.95772 0.96173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1627000 749890 877150 1627000 749890 877150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11819 3148 12298 60102 60304;60305 60305 2 GMFNSALEVAK TGFPYKIFKNTSFIKGMFNSALEVAKFEGA SFIKGMFNSALEVAKFEGAVIRTVSGIRGQ K G M A K F 2 0 1 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 11 0 1165.5801 Q14692 Q14692 1045 1055 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.006947 43.282 By matching By matching By MS/MS By matching 1 1 2 2 1.4175 1.3998 28.24 6 Median 2.3493 2.3147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4815 1.5999 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2163 1.2667 16.397 2 0 Median 1.423 1.2016 19.327 2 0 Median 13457000 5335500 8121400 1080100 217930 862200 0 0 0 2407400 885940 1521500 0 0 0 9226300 3921000 5305400 743030 310690 432340 11820 2893 12299 60103;60104;60105;60106;60107;60108 60306;60307 60307 2 GMFTAEDLR HPYDAAKDSILRRARGMFTAEDLR______ ILRRARGMFTAEDLR_______________ R G M L R - 1 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 9 0 1038.4804 Q16864 Q16864 111 119 ATP6V1F V-type proton ATPase subunit F yes yes 2 0.0049104 59.245 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2013 1.1118 19.205 4 Median 0.94669 0.92325 NaN 1 0 Median 1.1201 0.94864 NaN 1 0 Median 1.2883 1.3059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6856 1.3031 NaN 1 0 Median 8435900 3792900 4643000 3739100 1799800 1939300 2355000 1025200 1329800 1894900 837460 1057500 0 0 0 0 0 0 446880 130400 316480 11821 3000 12300 60109;60110;60111;60112 60308;60309;60310;60311 60309 4 GMFTLFSYHPVPTEPLPIPK LLQLCQRTMALPVGRGMFTLFSYHPVPTEP FSYHPVPTEPLPIPKLNLTGRAPPRNTTVD R G M P K L 0 0 0 0 0 0 1 1 1 1 2 1 1 2 5 1 2 0 1 1 0 0 20 0 2270.1809 Q9H1A4;H0Y564 Q9H1A4 1085 1104 ANAPC1 Anaphase-promoting complex subunit 1 yes no 3 0.05718 8.1875 By MS/MS 1 0.4048 0.45121 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4048 0.45121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2481200 1696800 784420 0 0 0 0 0 0 2481200 1696800 784420 0 0 0 0 0 0 0 0 0 11822 3933 12301 60113 60312 60312 1 GMGFLMR SATADRIPIAVSGVRGMGFLMRHHIETGGG PIAVSGVRGMGFLMRHHIETGGGQLPAKLS R G M M R H 0 1 0 0 0 0 0 2 0 0 1 0 2 1 0 0 0 0 0 0 0 0 7 0 810.38805 Q92616 Q92616 2531 2537 GCN1L1 Translational activator GCN1 yes yes 2 0.023603 56.51 By MS/MS By matching 1 1 1.4749 1.3518 10.888 2 Median 1.264 1.2517 NaN 1 0 Median 1.7209 1.46 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4019600 1968300 2051300 2696800 1381800 1314900 1322800 586420 736340 0 0 0 0 0 0 0 0 0 0 0 0 11823 3544 12302 60114;60115 60313 60313 1 GMGGAFVLVLYDELKK GGKAFFKGAWSNVLRGMGGAFVLVLYDELK MGGAFVLVLYDELKKVI_____________ R G M K K V 1 0 0 1 0 0 1 3 0 0 3 2 1 1 0 0 0 0 1 2 0 0 16 1 1738.9328 P12236 P12236 281 296 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 2;3 3.2045E-05 70.488 By MS/MS 5 1.1694 1.1096 17.919 5 Median NaN NaN NaN 0 0 Median 1.1694 1.1096 17.919 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23764000 9457000 14307000 0 0 0 23764000 9457000 14307000 0 0 0 0 0 0 0 0 0 0 0 0 11824 1977 12303 60116;60117;60118;60119;60120 60314;60315;60316;60317;60318 60314 5 GMGGAMDLVSSAK YGDLANWMIPGKMVKGMGGAMDLVSSAKTK VKGMGGAMDLVSSAKTKVVVTMEHSAKGNA K G M A K T 2 0 0 1 0 0 0 3 0 0 1 1 2 0 0 2 0 0 0 1 0 0 13 0 1222.5686 P55809;E9PDW2 P55809 422 434 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 0.0003807 74.944 By MS/MS By matching 2 2 1.0033 0.90346 39.701 4 Median 0.71653 0.67014 29.406 2 0 Median 1.3655 1.1827 25.241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22709000 11614000 11094000 19543000 10471000 9071200 3166000 1143000 2023000 0 0 0 0 0 0 0 0 0 0 0 0 11825 2503 12304 60121;60122;60123;60124 60319;60320 60320 2 GMGGHGYGGAGDASSGFHGGHFVHMR GYGNDGFDDRMRDGRGMGGHGYGGAGDASS DASSGFHGGHFVHMRGLPFRATENDIANFF R G M M R G 2 1 0 1 0 0 0 10 4 0 0 0 2 2 0 2 0 0 1 1 0 0 26 0 2542.0767 P31942 P31942 175 200 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3;4;5;6 8.7301E-47 146.06 By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 4 6 14 11 1.1071 0.99383 24.791 38 Median NaN NaN NaN 0 0 Median 1.3598 1.131 9.4257 3 0 Median 1.0033 0.97401 4.6169 4 0 Linear 1.194 1.0167 20.017 6 0 Median 1.054 1.0559 13.474 14 0 Median 1.2279 0.96373 40.28 11 1 Median 1204400000 565390000 639000000 0 0 0 9913500 4817100 5096500 65608000 28945000 36663000 26551000 12501000 14050000 978550000 469680000 508870000 123770000 49451000 74318000 11826 2208 12305;12306 60125;60126;60127;60128;60129;60130;60131;60132;60133;60134;60135;60136;60137;60138;60139;60140;60141;60142;60143;60144;60145;60146;60147;60148;60149;60150;60151;60152;60153;60154;60155;60156;60157;60158;60159;60160;60161;60162 60321;60322;60323;60324;60325;60326;60327;60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338;60339;60340;60341;60342;60343;60344;60345;60346;60347;60348;60349;60350;60351;60352;60353 60343 944;945 32 GMGGLFSVGETTAK YTIRRGPAGIGRTGRGMGGLFSVGETTAKV RGMGGLFSVGETTAKVLKDEIDVKFKDVAG R G M A K V 1 0 0 0 0 0 1 4 0 0 1 1 1 1 0 1 2 0 0 1 0 0 14 0 1353.6599 Q9Y4W6;K7EP56 Q9Y4W6 284 297 AFG3L2 AFG3-like protein 2 yes no 2 0.00024556 77.744 By MS/MS 1 0.96126 0.86973 NaN 1 Median 0.96126 0.86973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12934000 6293700 6640400 12934000 6293700 6640400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11827 4449 12307 60163 60354 60354 1 GMGLGFTSSMR DAQYEMARSQTHTQRGMGLGFTSSMRGMDA HTQRGMGLGFTSSMRGMDAV__________ R G M M R G 0 1 0 0 0 0 0 3 0 0 1 0 2 1 0 2 1 0 0 0 0 0 11 0 1142.5212 Q7L4I2 Q7L4I2 419 429 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes yes 2 0.00020466 102.07 By MS/MS 1 0.95515 0.98203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95515 0.98203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5378500 2895100 2483400 0 0 0 0 0 0 5378500 2895100 2483400 0 0 0 0 0 0 0 0 0 11828 3222 12308 60164 60355;60356 60356 2 GMGLSLMR RPLWFICSGMGTQWRGMGLSLMRLDRFRDS GMGTQWRGMGLSLMRLDRFRDSILRSDEAV R G M M R L 0 1 0 0 0 0 0 2 0 0 2 0 2 0 0 1 0 0 0 0 0 0 8 0 863.43573 P49327;A0A0U1RQF0 P49327 505 512 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0024442 138.07 By MS/MS By MS/MS By matching By matching 6 7 1 1 1.4562 1.2546 17.752 13 Median 1.0688 1.0178 6.2894 5 1 Median 1.6442 1.3991 10.804 6 0 Median NaN NaN NaN 0 0 Median 1.6513 1.4332 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2 0.99459 NaN 1 0 Median 67598000 30239000 37359000 41283000 19832000 21451000 25866000 10223000 15643000 0 0 0 102290 38213 64073 0 0 0 347260 146500 200760 11829 2377 12309;12310 60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175;60176;60177;60178;60179 60357;60358;60359;60360;60361;60362;60363;60364;60365;60366;60367;60368 60360 1087 12 GMGPGTPAGYGR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE GPRGMGPGTPAGYGRGREEYEGPNKKPRF_ R G M G R G 1 1 0 0 0 0 0 5 0 0 0 0 1 0 2 0 1 0 1 0 0 0 12 0 1119.5131 P23246 P23246 682 693 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 9.2945E-05 92.051 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1 0.87524 0.75653 20.574 9 Median NaN NaN NaN 0 0 Median 1.0962 1.003 39.883 2 1 Median 0.74556 0.79086 13.956 2 0 Median 0.91632 0.78988 14.932 3 0 Median 0.71662 0.72544 NaN 1 1 Median 0.88972 0.71801 NaN 1 0 Median 130940000 70543000 60393000 0 0 0 23033000 12139000 10894000 47656000 26887000 20769000 36091000 18073000 18018000 16815000 9702000 7113200 7340800 3741700 3599000 11830 2107 12311;12312 60180;60181;60182;60183;60184;60185;60186;60187;60188 60369;60370;60371;60372;60373;60374;60375;60376;60377;60378;60379;60380;60381 60377 869 13 GMGSLDAMDK GEYFFSDGIRLKKYRGMGSLDAMDKHLSSQ LKKYRGMGSLDAMDKHLSSQNRYFSEADKI R G M D K H 1 0 0 2 0 0 0 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 10 0 1023.4365 P12268;H0Y4R1 P12268 413 422 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0015287 64.711 By MS/MS By MS/MS By matching 1 1 1 1.3164 1.2351 28.077 3 Median 1.3164 1.2351 NaN 1 0 Median 1.2947 1.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1319 1.8758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13756000 5794600 7961600 6721000 2695100 4025900 6740500 3003700 3736800 0 0 0 294680 95822 198860 0 0 0 0 0 0 11831 1148 12313 60189;60190;60191 60382;60383 60383 2 GMGSLDAMDKHLSSQNR GEYFFSDGIRLKKYRGMGSLDAMDKHLSSQ GSLDAMDKHLSSQNRYFSEADKIKVAQGVS R G M N R Y 1 1 1 2 0 1 0 2 1 0 2 1 2 0 0 3 0 0 0 0 0 0 17 1 1845.8462 P12268;H0Y4R1 P12268 413 429 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 1.0092E-05 52.453 By MS/MS 1 1.0414 1.0375 NaN 1 Median 1.0414 1.0375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14285000 5958400 8326400 14285000 5958400 8326400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11832 1148 12314 60192 60384;60385 60385 2 GMIDGSTPTITPNPNFR NALLEPGGVLTISERGMIDGSTPTITPNPN IDGSTPTITPNPNFRLFLSMDPVHGDISRA R G M F R L 0 1 2 1 0 0 0 2 0 2 0 0 1 1 3 1 3 0 0 0 0 0 17 0 1816.8778 Q9NU22 Q9NU22 2271 2287 MDN1 Midasin yes yes 2 3.5809E-13 126.76 By MS/MS By MS/MS By MS/MS 2 2 2 0.68526 0.65564 32.561 6 Median 0.93528 0.91813 62.419 2 1 Median NaN NaN NaN 0 0 Median 0.6252 0.65564 0.73186 2 0 Median 0.7894 0.68688 8.5217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73176000 43178000 29998000 11062000 6473500 4588800 0 0 0 60050000 35623000 24426000 2064000 1080700 983250 0 0 0 0 0 0 11833 4112 12315;12316 60193;60194;60195;60196;60197;60198 60386;60387;60388;60389;60390;60391;60392;60393 60387 1881 8 GMIPVPYVEK PEEQWWNAEDSEGKRGMIPVPYVEKYRPAS SEGKRGMIPVPYVEKYRPASASVSALIGGN R G M E K Y 0 0 0 0 0 0 1 1 0 1 0 1 1 0 2 0 0 0 1 2 0 0 10 0 1131.5998 P46108 P46108 180 189 CRK Adapter molecule crk yes yes 2 0.026674 35.152 By MS/MS By matching 1 1 1.053 1.0141 4.7914 2 Median 1.0894 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0177 0.98035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6252000 2742900 3509000 4417200 1877000 2540200 0 0 0 1834800 865940 968860 0 0 0 0 0 0 0 0 0 11834 2340 12317 60199;60200 60394 60394 1 GMLHEEKPGEQILEGGSESESAQK DTENDLKGAAIHISKGMLHEEKPGEQILEG EQILEGGSESESAQKAAGNQMNDRKIQQES K G M Q K A 1 0 0 0 0 2 6 4 1 1 2 2 1 0 1 3 0 0 0 0 0 0 24 1 2569.1966 Q5JRA6;A0A0A0MRH6 Q5JRA6 538 561 MIA3 Melanoma inhibitory activity protein 3 yes no 4 3.2979E-05 35.179 By MS/MS By MS/MS 1 1 0.9013 0.87063 12.191 2 Median 0.98269 0.94901 NaN 1 0 Median 0.82666 0.79872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14483000 6792700 7690500 11019000 5049200 5970100 3463900 1743400 1720400 0 0 0 0 0 0 0 0 0 0 0 0 11835 3049 12318 60201;60202 60395;60396;60397 60395 3 GMLKDNAMLEYLK DQWEDRIQVWHAEHRGMLKDNAMLEYLKIA HRGMLKDNAMLEYLKIAQDLEMYGINYFEI R G M L K I 1 0 1 1 0 0 1 1 0 0 3 2 2 0 0 0 0 0 1 0 0 0 13 1 1524.768 P15311;E7EQR4 P15311 181 193 EZR Ezrin yes no 2;3 2.1718E-13 127.87 By MS/MS By matching 3 1 1.0947 1.1203 11.675 3 Plateau 1.0802 1.1108 5.4204 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78442 0.91763 NaN 1 0 Median NaN NaN NaN 0 0 Median 21450000 9546100 11904000 20541000 9059500 11481000 0 0 0 0 0 0 0 0 0 909590 486590 423000 0 0 0 11836 879 12319 60203;60204;60205;60206 60398;60399;60400;60401 60401 4 GMLLLMER VVGSEYTRALFLLSKGMLLLMERKLQEVHP ALFLLSKGMLLLMERKLQEVHPLLTLCGQI K G M E R K 0 1 0 0 0 0 1 1 0 0 3 0 2 0 0 0 0 0 0 0 0 0 8 0 961.50889 Q9Y6X3;V9GYS3;V9GZ52 Q9Y6X3 192 199 MAU2 MAU2 chromatid cohesion factor homolog yes no 2 0.020409 66.682 By MS/MS 1 0.52646 0.54685 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52646 0.54685 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3967900 2612700 1355300 0 0 0 0 0 0 3967900 2612700 1355300 0 0 0 0 0 0 0 0 0 11837 4499 12320 60207 60402 60402 1 GMLREDAVLEYLK DQWEERIQVWHEEHRGMLREDAVLEYLKIA HRGMLREDAVLEYLKIAQDLEMYGVNYFSI R G M L K I 1 1 0 1 0 0 2 1 0 0 3 1 1 0 0 0 0 0 1 1 0 0 13 1 1535.8018 P26038 P26038 181 193 MSN Moesin yes yes 2;3 0.00043029 72.006 By MS/MS By matching By MS/MS By matching 3 2 3 2 1.1286 1.109 21.079 10 Median 1.0996 1.1064 4.7317 3 0 Median 1.2014 1.0819 3.8194 2 0 Median 0.96078 1.0207 20.871 3 0 Median 1.5183 1.4388 30.883 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66673000 31446000 35227000 45987000 21771000 24216000 3387800 1438900 1948900 16996000 8110800 8885500 301520 125190 176330 0 0 0 0 0 0 11838 2139 12321 60208;60209;60210;60211;60212;60213;60214;60215;60216;60217 60403;60404;60405;60406;60407;60408;60409;60410 60408 8 GMLREDSMMEYLK EQWEERIQNWHEEHRGMLREDSMMEYLKIA HRGMLREDSMMEYLKIAQDLEMYGVNYFEI R G M L K I 0 1 0 1 0 0 2 1 0 0 2 1 3 0 0 1 0 0 1 0 0 0 13 1 1601.7252 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 181 193 RDX Radixin yes no 2;3 0.0014695 45.973 By MS/MS By matching By matching 2 1 1 0.94064 1.032 12.197 4 Linear 0.95811 0.98341 13.301 2 0 Median 1.0143 0.86181 NaN 1 0 Median 0.75065 0.81573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18989000 9126100 9862800 15803000 7516100 8287300 1648500 694640 953860 1537000 915360 621610 0 0 0 0 0 0 0 0 0 11839 2235 12322 60218;60219;60220;60221 60411;60412;60413;60414 60412 4 GMMSTVTEVR GQRTIAALLPCLLDKGMMSTVTEVRALSIN CLLDKGMMSTVTEVRALSINTLVKISKSAG K G M V R A 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 1 2 0 0 2 0 0 10 0 1109.5209 Q5VYK3;J3KN16 Q5VYK3 1262 1271 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.00032996 124.98 By MS/MS By MS/MS 1 1 0.98918 0.88499 10.861 2 Median 0.87327 0.81957 NaN 1 0 Median 1.1205 0.95563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25554000 11713000 13841000 16967000 8010200 8956500 8587200 3702500 4884700 0 0 0 0 0 0 0 0 0 0 0 0 11840 3116 12323 60222;60223 60415;60416;60417;60418 60415 4 GMNMYLTK IRMLHDYIGDKDFKKGMNMYLTKFQQKNAA GDKDFKKGMNMYLTKFQQKNAATEDLWESL K G M T K F 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 0 1 0 1 0 0 0 8 0 956.44596 E9PLK3;P55786;A6NEC2;E9PJ74;E9PRQ5 E9PLK3 456 463 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0057517 74.127 By MS/MS By MS/MS 1 2 1.08 0.99357 34.75 3 Plateau 0.82444 0.79789 NaN 1 0 Median 0.95612 0.87793 48.52 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27479000 12198000 15281000 11249000 5171800 6076700 16230000 7026000 9204100 0 0 0 0 0 0 0 0 0 0 0 0 11841 960 12324 60224;60225;60226 60419;60420;60421;60422 60420 4 GMNVPFK ISELVSTACGFRLHRGMNVPFKRLSGVSLL ACGFRLHRGMNVPFKRLSGVSLLQWSLENT R G M F K R 0 0 1 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 7 0 791.4 A0A087WV46;C9JXA7;Q0VGL1;A0A087WT92 A0A087WV46 58 64 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes no 2 0.028184 66.994 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2426900 0 2426900 0 0 0 2426900 0 2426900 0 0 0 0 0 0 0 0 0 0 0 0 11842 39 12325 60227 60423 60423 1 GMNVPFKR ISELVSTACGFRLHRGMNVPFKRLSGVSLL CGFRLHRGMNVPFKRLSGVSLLQWSLENTH R G M K R L 0 1 1 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 8 1 947.50111 A0A087WV46;C9JXA7;Q0VGL1;A0A087WT92 A0A087WV46 58 65 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes no 2 0.0033158 88.734 By MS/MS By MS/MS 1 1 0.95951 0.89279 15.176 2 Median 0.81782 0.80195 NaN 1 0 Median 1.1258 0.99392 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24086000 12078000 12009000 11121000 5840500 5280100 12966000 6237300 6728500 0 0 0 0 0 0 0 0 0 0 0 0 11843 39 12326 60228;60229 60424;60425;60426 60426 3 GMPQEER QLLVEQNFPAIAIHRGMPQEERLSRYQQFK FPAIAIHRGMPQEERLSRYQQFKDFQRRIL R G M E R L 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 7 0 845.37015 H0Y400;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3 Q13838 320 326 DDX39B Spliceosome RNA helicase DDX39B no no 2 0.031276 49.358 By matching By MS/MS By MS/MS 1 1 2 0.91577 0.91856 5.8466 4 Median NaN NaN NaN 0 0 Median 1.1448 1.0029 NaN 1 0 Median 0.90328 0.90668 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91577 0.90153 4.485 2 0 Median NaN NaN NaN 0 0 Median 6575700 3353700 3222000 0 0 0 660920 302770 358150 3761900 1907200 1854700 0 0 0 2152900 1143700 1009200 0 0 0 11844 2842;1146 12327 60230;60231;60232;60233 60427;60428;60429;60430;60431 60428 5 GMPTGEAMVAFESR YQVIPGSVCLKYNEKGMPTGEAMVAFESRD KGMPTGEAMVAFESRDEATAAVIDLNDRPI K G M S R D 2 1 0 0 0 0 2 2 0 0 0 0 2 1 1 1 1 0 0 1 0 0 14 0 1481.6643 Q9NTZ6 Q9NTZ6 894 907 RBM12 RNA-binding protein 12 yes yes 2 0.034255 76.655 By MS/MS By matching By matching By matching 2 3 2 1 0.92836 0.86722 10.328 8 Median 0.9117 0.88838 0.52668 2 0 Median 1.0049 0.84972 17.827 3 0 Median 0.85569 0.86059 8.2716 2 0 Median 1.0544 0.83253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38472000 19636000 18836000 16150000 8372400 7777400 2929000 1422800 1506200 18633000 9508000 9125200 759680 332290 427390 0 0 0 0 0 0 11845 4111 12328 60234;60235;60236;60237;60238;60239;60240;60241 60432 60432 0 GMQGPPPQGSMLGPPQELR LGHGPQEMRGPQEIRGMQGPPPQGSMLGPP PPPQGSMLGPPQELRGPPGSQSQQGPPQGS R G M L R G 0 1 0 0 0 3 1 4 0 0 2 0 2 0 5 1 0 0 0 0 0 0 19 0 1975.9608 Q9C0J8 Q9C0J8 835 853 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2 1.4231E-13 108.17 By MS/MS By matching 1 1 0.43712 0.42926 10.986 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42185 0.46394 NaN 1 0 Median 0.45295 0.39718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8202100 6378300 1823800 0 0 0 0 0 0 7650800 5974600 1676200 551260 403690 147570 0 0 0 0 0 0 11846 3907 12329 60242;60243 60433;60434;60435 60433 3 GMQLHGVLR IDVEVKKYFCKAGVKGMQLHGVLRVILEPL CKAGVKGMQLHGVLRVILEPLIGDLPFVGA K G M L R V 0 1 0 0 0 1 0 2 1 0 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1009.5491 Q9BSJ8 Q9BSJ8 236 244 ESYT1 Extended synaptotagmin-1 yes yes 2 0.0005553 114.78 By MS/MS By MS/MS 2 2 1.2816 1.2303 28.121 4 Median 1.0968 1.0857 37.35 2 0 Median 1.2816 1.2881 26.172 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31859000 15007000 16852000 7314500 3465000 3849400 24545000 11542000 13003000 0 0 0 0 0 0 0 0 0 0 0 0 11847 3816 12330 60244;60245;60246;60247 60436;60437 60437 2 GMQLMHANAQR GLSPDTIMECAMGDRGMQLMHANAQRTDAL MGDRGMQLMHANAQRTDALQPPHEYVPWVT R G M Q R T 2 1 1 0 0 2 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 11 0 1255.5914 P13284 P13284 184 194 IFI30 Gamma-interferon-inducible lysosomal thiol reductase yes yes 3 0.0022562 40.715 By MS/MS By MS/MS By matching 2 1 1 1.0577 0.94901 38.462 4 Median 1.3373 1.275 48.348 2 0 Median 1.1649 0.99428 NaN 1 0 Median 0.7792 0.73022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7914900 3694400 4220500 5639100 2378500 3260600 792250 433290 358950 1483500 882630 600890 0 0 0 0 0 0 0 0 0 11848 1989 12331 60248;60249;60250;60251 60438;60439 60438 2 GMSLNLEPDNVGVVVFGNDK NVQAEEMVEFSSGLKGMSLNLEPDNVGVVV LEPDNVGVVVFGNDKLIKEGDIVKRTGAIV K G M D K L 0 0 3 2 0 0 1 3 0 0 2 1 1 1 1 1 0 0 0 4 0 0 20 0 2103.0307 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 104 123 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.042303 20.106 By MS/MS By MS/MS 1 2 1.1813 1.002 29.023 3 Plateau NaN NaN NaN 0 0 Median 1.1813 1.002 NaN 1 0 Median 0.83947 0.86003 39.103 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13473000 6530600 6942400 0 0 0 8879200 4002800 4876400 4593800 2527800 2066000 0 0 0 0 0 0 0 0 0 11849 2135 12332 60252;60253;60254 60440;60441;60442 60440 3 GMSVSDLADK RELDSITPEVLPGWKGMSVSDLADKLSTDD LPGWKGMSVSDLADKLSTDDLNSLIAHAHR K G M D K L 1 0 0 2 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 1 0 0 10 0 1021.475 Q16891;B9A067;C9J406;H7C463 Q16891 386 395 IMMT MICOS complex subunit MIC60 yes no 2 0.010217 44.203 By MS/MS 1 1.3042 1.1537 NaN 1 Median NaN NaN NaN 0 0 Median 1.3042 1.1537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2039400 859130 1180300 0 0 0 2039400 859130 1180300 0 0 0 0 0 0 0 0 0 0 0 0 11850 3001 12333 60255 60443;60444 60444 2 GMSVSDLADKLSTDDLNSLIAHAHR RELDSITPEVLPGWKGMSVSDLADKLSTDD LSTDDLNSLIAHAHRRIDQLNRELAEQKAT K G M H R R 3 1 1 4 0 0 0 1 2 1 4 1 1 0 0 4 1 0 0 1 0 0 25 1 2665.313 Q16891;B9A067;C9J406;H7C463 Q16891 386 410 IMMT MICOS complex subunit MIC60 yes no 4 4.1712E-13 59.814 By MS/MS By MS/MS By matching 1 2 1 1.1771 1.1908 13.222 4 Median 0.94854 0.9733 NaN 1 0 Median 1.318 1.2578 8.6955 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.08 1.1989 NaN 1 0 Median NaN NaN NaN 0 0 Median 34483000 14546000 19936000 6530100 3090000 3440100 26490000 10788000 15702000 0 0 0 0 0 0 1462700 668790 793870 0 0 0 11851 3001 12334 60256;60257;60258;60259 60445;60446;60447;60448;60449;60450;60451 60446 7 GMSVYGLGR TISLQMGTNKVASQKGMSVYGLGRQVYDPK KVASQKGMSVYGLGRQVYDPKYCAAPTEPV K G M G R Q 0 1 0 0 0 0 0 3 0 0 1 0 1 0 0 1 0 0 1 1 0 0 9 0 938.46439 Q15417 Q15417 257 265 CNN3 Calponin-3 yes yes 2 0.0060753 55.676 By MS/MS By matching 1 1 1.4122 1.3261 33.727 2 Median 1.6978 1.6832 NaN 1 0 Median 1.1747 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6559200 2474000 4085200 6172400 2291200 3881200 386790 182810 203980 0 0 0 0 0 0 0 0 0 0 0 0 11852 2950 12335 60260;60261 60452 60452 1 GMTENEVEDR LLAKYCDNLLKKSAKGMTENEVEDRLTSFI KKSAKGMTENEVEDRLTSFITVFKYIDDKD K G M D R L 0 1 1 1 0 0 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1178.4874 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 418 427 CUL2 Cullin-2 yes no 2 0.00041856 120.15 By MS/MS By MS/MS By MS/MS 1 1 1 1.152 1.0604 13.346 2 Median 1.1948 1.1653 NaN 1 0 Median 1.1108 0.96486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5190000 2498200 2691800 2990300 1397700 1592600 2199600 1100500 1099100 0 0 0 0 0 0 0 0 0 0 0 0 11853 196 12336 60262;60263;60264 60453;60454;60455;60456;60457 60454 5 GMTLVTPLQLLLFASK FVFGEKIRTRAISAKGMTLVTPLQLLLFAS MTLVTPLQLLLFASKKVQSDGQIVLVDDWI K G M S K K 1 0 0 0 0 1 0 1 0 0 5 1 1 1 1 1 2 0 0 1 0 0 16 0 1731.0005 Q08211 Q08211 1058 1073 DHX9 ATP-dependent RNA helicase A yes yes 2 7.8872E-07 93.959 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 1 6 3 2 5 1.2487 1.1666 10.643 22 Median 1.2632 1.2231 4.8945 5 0 Median 1.3495 1.1871 NaN 1 0 Median 1.0213 1.0625 7.1029 6 0 Median 1.4424 1.215 4.8258 3 0 Median 0.85908 0.94639 17.457 2 0 Median 1.3596 1.1394 7.1675 5 0 Median 133170000 63867000 69305000 11646000 5020600 6625800 71219 29624 41594 78101000 38431000 39670000 3768800 1603300 2165500 37428000 17846000 19582000 2157100 936690 1220400 11854 2736 12337;12338 60265;60266;60267;60268;60269;60270;60271;60272;60273;60274;60275;60276;60277;60278;60279;60280;60281;60282;60283;60284;60285;60286 60458;60459;60460;60461;60462;60463;60464 60458 1418 7 GMTSESDSIGLTPGEK KLSDGIGVMLPQVLKGMTSESDSIGLTPGE MTSESDSIGLTPGEKSELALSALGGCVFYL K G M E K S 0 0 0 1 0 0 2 3 0 1 1 1 1 0 1 3 2 0 0 0 0 0 16 0 1607.7349 P52701;A0A494C0M1;A0A087WWJ1 P52701 661 676 MSH6 DNA mismatch repair protein Msh6 yes no 2 3.6023E-10 126.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 2 1.026 0.90666 12.351 9 Median 0.80677 0.7763 NaN 1 0 Median 1.1299 0.98857 12.232 2 0 Median 0.82087 0.87523 NaN 1 0 Median 1.1036 0.94449 8.1958 3 2 Median NaN NaN NaN 0 0 Median 1.0292 0.87131 19.737 2 0 Median 61176000 32652000 28525000 21027000 11773000 9253500 5388100 2466800 2921300 19649000 11248000 8400500 13708000 6527200 7180500 0 0 0 1404800 636150 768680 11855 2453 12339 60287;60288;60289;60290;60291;60292;60293;60294;60295 60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476 60468 12 GMTTVDDFFQGTK PGGIDVHTHFQMPYKGMTTVDDFFQGTKAA YKGMTTVDDFFQGTKAALAGGTTMIIDHVV K G M T K A 0 0 0 2 0 1 0 2 0 0 0 1 1 2 0 0 3 0 0 1 0 0 13 0 1445.6497 Q14195 Q14195 82 94 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 2 0.00049168 72.2 By MS/MS By matching 2 1 1.1136 1.0442 9.3289 3 Median 1.028 0.97525 9.6639 2 1 Median NaN NaN NaN 0 0 Median 1.1301 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11380000 5556800 5823100 9550000 4745800 4804100 0 0 0 1830000 810980 1019000 0 0 0 0 0 0 0 0 0 11856 2864 12340 60296;60297;60298 60477;60478;60479 60477 3 GMTVEGLK WDDPRFPTVRGVLRRGMTVEGLKQFIAAQG VRGVLRRGMTVEGLKQFIAAQGSSRSVVNM R G M L K Q 0 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 1 0 0 8 0 833.43169 P07814;V9GYZ6 P07814 465 472 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0048619 79.116 By MS/MS 1 1.266 1.1242 NaN 1 Median NaN NaN NaN 0 0 Median 1.266 1.1242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3382300 1811400 1570800 0 0 0 3382300 1811400 1570800 0 0 0 0 0 0 0 0 0 0 0 0 11857 1892 12341 60299 60480 60480 1 GMVFGAPVPK FGGLQNKAPPMDKLRGMVFGAPVPKQCLIL MDKLRGMVFGAPVPKQCLILGEQIDLLQQY R G M P K Q 1 0 0 0 0 0 0 2 0 0 0 1 1 1 2 0 0 0 0 2 0 0 10 0 1001.5368 A6NHR9;J3KTL8;A0A2R8YCU7 A6NHR9 1888 1897 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.001468 65.252 By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 1 0.78095 0.81504 22.672 6 Median NaN NaN NaN 0 0 Median 0.73254 0.63654 NaN 1 0 Median 0.77182 0.85445 11.194 2 0 Median 0.92436 0.8415 NaN 1 0 Median 0.49123 0.51525 NaN 1 0 Median 0.90894 0.89029 NaN 1 0 Median 24586000 13393000 11193000 0 0 0 854370 474840 379530 19552000 10617000 8934800 1214600 711470 503110 1226800 811720 415040 1737900 777440 960450 11858 518 12342;12343 60300;60301;60302;60303;60304;60305 60481;60482;60483;60484;60485 60482 205 5 GMVSAYPR LIEAYVDMRKIGSSRGMVSAYPRQLESLIR RKIGSSRGMVSAYPRQLESLIRLAEAHAKV R G M P R Q 1 1 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 1 0 0 8 0 879.42727 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 675 682 MCM4 DNA replication licensing factor MCM4 yes no 2 0.0027921 90.986 By MS/MS By MS/MS By MS/MS 1 2 1 0.99078 0.88857 9.6504 4 Median 0.81991 0.80159 NaN 1 0 Median 1.0423 0.88857 2.7478 2 1 Median 0.94573 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17249000 8329500 8919600 2754900 1445000 1309900 12205000 5652800 6552700 2288800 1231700 1057000 0 0 0 0 0 0 0 0 0 11859 441 12344 60306;60307;60308;60309 60486;60487;60488;60489;60490;60491;60492 60490 7 GNAAVLDYCR AKREGPPFISEAAVRGNAAVLDYCRTSVSA EAAVRGNAAVLDYCRTSVSALSGATAGILG R G N C R T 2 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1137.5237 Q9BV81 Q9BV81 21 30 EMC6 ER membrane protein complex subunit 6 yes yes 2 0.00070454 108.98 By MS/MS 1 1.3989 1.1873 NaN 1 Median NaN NaN NaN 0 0 Median 1.3989 1.1873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6356300 2533900 3822500 0 0 0 6356300 2533900 3822500 0 0 0 0 0 0 0 0 0 0 0 0 11860 3847 12345 60310 60493 60493 1 GNAAWQEQLK NSLSLADLCVWATLKGNAAWQEQLKQKKAP WATLKGNAAWQEQLKQKKAPVHVKRWFGFL K G N L K Q 2 0 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1143.5673 P07814;V9GYZ6;V9GZ76 P07814 130 139 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 8.6829E-11 131.22 By MS/MS By MS/MS 2 2 1.0577 1.0018 2.4021 3 Median 1.0324 0.9958 3.3618 2 2 Median 1.1304 1.0018 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40424000 18909000 21515000 31568000 14724000 16845000 8855500 4185200 4670300 0 0 0 0 0 0 0 0 0 0 0 0 11861 1892 12346 60311;60312;60313;60314 60494;60495;60496;60497 60497 4 GNAEGSSDEEGKLVIDEPAK PEPEPEAAEGDGDKKGNAEGSSDEEGKLVI SSDEEGKLVIDEPAKEKNEKGALKRRAGDL K G N A K E 2 0 1 2 0 0 4 3 0 1 1 2 0 0 1 2 0 0 0 1 0 0 20 1 2043.9597 P51858 P51858 127 146 HDGF Hepatoma-derived growth factor yes yes 3 1.8455E-10 86.44 By MS/MS By MS/MS 1 1 0.76576 0.73772 1.3729 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70095 0.73059 NaN 1 0 Median 0.83655 0.74491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25308000 13357000 11951000 0 0 0 0 0 0 21607000 11354000 10253000 3701700 2003200 1698500 0 0 0 0 0 0 11862 2444 12347 60315;60316 60498;60499;60500;60501 60499 4 GNAEGSSDEEGKLVIDEPAKEK PEPEPEAAEGDGDKKGNAEGSSDEEGKLVI DEEGKLVIDEPAKEKNEKGALKRRAGDLLE K G N E K N 2 0 1 2 0 0 5 3 0 1 1 3 0 0 1 2 0 0 0 1 0 0 22 2 2301.0972 P51858 P51858 127 148 HDGF Hepatoma-derived growth factor yes yes 3;4 3.179E-10 61.703 By MS/MS By MS/MS 3 2 0.64879 0.69366 20.262 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62805 0.66964 20.014 3 0 Median 0.81462 0.76681 13.776 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36285000 20175000 16111000 0 0 0 0 0 0 31078000 17572000 13506000 5207500 2602900 2604600 0 0 0 0 0 0 11863 2444 12348 60317;60318;60319;60320;60321 60502;60503;60504;60505;60506;60507;60508 60504 7 GNAGGIQPDLLISLTAPK PIASIDIPSGWDVEKGNAGGIQPDLLISLT GGIQPDLLISLTAPKKSATQFTGRYHYLGG K G N P K K 2 0 1 1 0 1 0 3 0 2 3 1 0 0 2 1 1 0 0 0 0 0 18 0 1763.9781 Q8NCW5 Q8NCW5 228 245 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 1.6956E-11 107.53 By MS/MS By matching By matching 1 1 1 0.94059 0.77545 8.4299 3 Median 0.73448 0.67958 NaN 1 0 Median 0.9486 0.795 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94059 0.77545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39119000 22013000 17107000 30379000 17599000 12780000 8227300 4142500 4084800 0 0 0 512830 271160 241670 0 0 0 0 0 0 11864 3420 12349 60322;60323;60324 60509;60510 60509 2 GNAGQSNYGFANSAMER ELDYFVVFSSVSCGRGNAGQSNYGFANSAM AGQSNYGFANSAMERICEKRRHEGLPGLAV R G N E R I 3 1 3 0 0 1 1 3 0 0 0 0 1 1 0 2 0 0 1 0 0 0 17 0 1772.7536 P49327;A0A0U1RQF0 P49327 2027 2043 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 7.6043E-32 202.29 By MS/MS By MS/MS By MS/MS By matching By matching 6 5 1 1 1 1.2965 1.1132 22.726 14 Median 1.0165 0.98078 7.9005 6 0 Median 1.3967 1.1953 12.445 5 0 Median 1.2849 1.4132 NaN 1 0 Median 1.3126 1.1511 NaN 1 0 Median 1.995 2.0858 NaN 1 0 Median NaN NaN NaN 0 0 Median 171480000 77253000 94231000 113550000 54019000 59528000 49940000 20092000 29849000 5833500 2403000 3430500 552180 214800 337380 1611000 524110 1086900 0 0 0 11865 2377 12350;12351 60325;60326;60327;60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338 60511;60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526 60520 1088 16 GNAIYNLLPDIISR IAALAKNFFNELSHKGNAIYNLLPDIISRL KGNAIYNLLPDIISRLSDPELGVEEEPFHT K G N S R L 1 1 2 1 0 0 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 0 14 0 1557.8515 Q15021 Q15021 1160 1173 NCAPD2 Condensin complex subunit 1 yes yes 2 7.6282E-08 100.55 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 3 1 1 0.91307 0.88337 13.913 8 Median 0.89857 0.884 0.9799 3 0 Median 0.97959 0.88796 NaN 1 0 Median 0.73369 0.77745 13.027 2 1 Median 0.9375 0.82154 NaN 1 0 Median 1.1226 1.1729 NaN 1 0 Median NaN NaN NaN 0 0 Median 9349200 4831400 4517700 5993300 3015500 2977800 423630 219710 203920 2120600 1185500 935100 530220 264670 265550 281370 146050 135320 0 0 0 11866 2915 12352 60339;60340;60341;60342;60343;60344;60345;60346;60347 60527;60528;60529;60530;60531;60532;60533 60530 7 GNAMVEEGHFAAEDVK EIAGHEPRIKAVTQKGNAMVEEGHFAAEDV NAMVEEGHFAAEDVKAKLHELNQKWEALKA K G N V K A 3 0 1 1 0 0 3 2 1 0 0 1 1 1 0 0 0 0 0 2 0 0 16 0 1702.7621 A0A0D9SF54;Q13813 Q13813 847 862 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 8.6588E-63 191.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 8 9 4 3 1.065 1.012 17.018 32 Median 1.2629 1.2393 20.449 4 0 Median 1.2826 1.143 4.5727 4 1 Median 0.86948 0.95481 19.829 8 0 Median 1.064 0.95222 11.694 9 0 Median 1.0552 1.0978 6.4477 4 0 Median 1.1358 0.93752 10.123 3 0 Plateau 521630000 249910000 271720000 52419000 22294000 30125000 114450000 48765000 65687000 267260000 138290000 128980000 59125000 27146000 31979000 25422000 11917000 13504000 2954300 1505300 1449000 11867 264;2838 12353;12354 60348;60349;60350;60351;60352;60353;60354;60355;60356;60357;60358;60359;60360;60361;60362;60363;60364;60365;60366;60367;60368;60369;60370;60371;60372;60373;60374;60375;60376;60377;60378;60379 60534;60535;60536;60537;60538;60539;60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554;60555;60556;60557;60558;60559;60560;60561;60562;60563;60564;60565;60566;60567;60568;60569;60570;60571;60572;60573;60574 60550 122 41 GNAMVEEGHFAAEDVKAK EIAGHEPRIKAVTQKGNAMVEEGHFAAEDV MVEEGHFAAEDVKAKLHELNQKWEALKAKA K G N A K L 4 0 1 1 0 0 3 2 1 0 0 2 1 1 0 0 0 0 0 2 0 0 18 1 1901.8942 A0A0D9SF54;Q13813 Q13813 847 864 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.017951 19.553 By MS/MS By MS/MS 1 1 1.06 1.1324 16.36 2 Median 1.0203 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1012 1.2713 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9674600 4061300 5613200 4363700 1700200 2663500 0 0 0 5310800 2361100 2949700 0 0 0 0 0 0 0 0 0 11868 264;2838 12355 60380;60381 60575;60576 60575 2 GNAPEGLPQLMEVVR FHTIETLMRINAHSRGNAPEGLPQLMEVVR GNAPEGLPQLMEVVRSNYEAMIDRAHGGPN R G N V R S 1 1 1 0 0 1 2 2 0 0 2 0 1 0 2 0 0 0 0 2 0 0 15 0 1608.8294 A5YKK6;H3BMZ2 A5YKK6 1800 1814 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.00032682 66.267 By MS/MS By matching 1 1 0.76654 0.69642 31.349 2 Median 0.59193 0.55795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99266 0.86924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7832100 4525100 3307000 7561000 4400900 3160200 0 0 0 0 0 0 271030 124200 146830 0 0 0 0 0 0 11869 503 12356 60382;60383 60577;60578 60578 2 GNDIIAAAK AAQSLHREATKWSSKGNDIIAAAKRMALLM TKWSSKGNDIIAAAKRMALLMAEMSRLVRG K G N A K R 3 0 1 1 0 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 9 0 871.47633 P18206 P18206 984 992 VCL Vinculin yes yes 2 0.0017633 77.923 By MS/MS By MS/MS By matching 2 1 1 1.0312 0.94986 76.106 4 Median 0.49051 0.48507 112.5 2 0 Median 1.0156 0.85875 NaN 1 0 Median 1.0471 1.0506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19240000 10851000 8389000 4814700 3580100 1234700 12788000 6480000 6307700 1637300 790750 846550 0 0 0 0 0 0 0 0 0 11870 2057 12357 60384;60385;60386;60387 60579;60580;60581 60580 3 GNDISSGTVLSDYVGSGPPK PKYREWHHFLVVNMKGNDISSGTVLSDYVG SGTVLSDYVGSGPPKGTGLHRYVWLVYEQD K G N P K G 0 0 1 2 0 0 0 4 0 1 1 1 0 0 2 4 1 0 1 2 0 0 20 0 1948.9378 P30086 P30086 94 113 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3 1.1538E-38 198.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 3 1 1 0.87824 0.7912 14.769 14 Median 0.7696 0.71471 10.677 5 0 Median 0.9978 0.85549 9.6954 4 0 Median 0.77131 0.72347 24.655 3 0 Median 0.97162 0.80307 NaN 1 0 Median 0.85719 0.87973 NaN 1 0 Median NaN NaN NaN 0 0 Median 406460000 223400000 183070000 344150000 189790000 154360000 12563000 6342000 6221000 47046000 25937000 21109000 1271900 634300 637590 1431500 689930 741610 0 0 0 11871 2188 12358 60388;60389;60390;60391;60392;60393;60394;60395;60396;60397;60398;60399;60400;60401 60582;60583;60584;60585;60586;60587;60588;60589;60590;60591;60592;60593;60594;60595;60596;60597;60598;60599;60600;60601;60602;60603;60604;60605;60606 60585 25 GNDMQVGTYIEK ASEIAGVDDLGTTGRGNDMQVGTYIEKMFM TGRGNDMQVGTYIEKMFMSELSGNIIDICP R G N E K M 0 0 1 1 0 1 1 2 0 1 0 1 1 0 0 0 1 0 1 1 0 0 12 0 1353.6235 P28331;B4DJ81 P28331 201 212 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.001313 54.486 By MS/MS By matching 1 1 1.6285 1.4616 61.818 2 Median 1.0361 0.94404 NaN 1 0 Median 2.5595 2.2629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12038000 5048200 6990200 9910900 4534000 5376800 2127500 514150 1613400 0 0 0 0 0 0 0 0 0 0 0 0 11872 2165 12359 60402;60403 60607;60608 60608 2 GNDTFVTLDEILR ATDIHLGFMEKDAVRGNDTFVTLDEILRLA VRGNDTFVTLDEILRLAQENEVDFILLGGD R G N L R L 0 1 1 2 0 0 1 1 0 1 2 0 0 1 0 0 2 0 0 1 0 0 13 0 1491.7569 P49959;F8W7U8;F5GXT0;F5H742;F5H256 P49959 33 45 MRE11A Double-strand break repair protein MRE11A yes no 2 0.00055091 70.808 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 3 1.1178 0.99649 11.679 10 Median 1.0314 1.0087 12.601 2 0 Median 1.1646 1.0098 NaN 1 0 Median 1.0449 1.0897 14.526 2 0 Median 1.2517 1.0905 5.339 2 0 Median NaN NaN NaN 0 0 Median 1.0986 0.88588 5.5084 3 0 Median 13730000 6630400 7099800 2774700 1225800 1548900 2706400 1494400 1212100 4498300 2187400 2310900 967560 425370 542190 0 0 0 2783100 1297400 1485700 11873 2407 12360 60404;60405;60406;60407;60408;60409;60410;60411;60412;60413 60609;60610;60611;60612;60613 60611 5 GNDTPLALESTNTEK LEESKEMDIKRKENKGNDTPLALESTNTEK GNDTPLALESTNTEKETSLEETKIGEILIQ K G N E K E 1 0 2 1 0 0 2 1 0 0 2 1 0 0 1 1 3 0 0 0 0 0 15 0 1588.758 Q7Z6Z7 Q7Z6Z7 1719 1733 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 3.8404E-25 146.5 By MS/MS 1 0.8342 0.7363 NaN 1 Median NaN NaN NaN 0 0 Median 0.8342 0.7363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9958300 5500700 4457600 0 0 0 9958300 5500700 4457600 0 0 0 0 0 0 0 0 0 0 0 0 11874 3253 12361 60414 60614 60614 1 GNDTPLALESTNTEKETSLEETK LEESKEMDIKRKENKGNDTPLALESTNTEK ESTNTEKETSLEETKIGEILIQGLTEDMVT K G N T K I 1 0 2 1 0 0 5 1 0 0 3 2 0 0 1 2 5 0 0 0 0 0 23 1 2506.1922 Q7Z6Z7 Q7Z6Z7 1719 1741 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 4.938E-43 179.03 By MS/MS By MS/MS By matching 2 2 1 0.87435 0.86618 10.35 5 Median 0.7811 0.80269 10.766 2 0 Median 0.90555 0.87334 2.4072 2 0 Median 0.87435 0.99401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55942000 28852000 27089000 40226000 21496000 18730000 13020000 5982200 7037500 2695700 1373500 1322100 0 0 0 0 0 0 0 0 0 11875 3253 12362 60415;60416;60417;60418;60419 60615;60616;60617;60618;60619 60616 5 GNDVAFHFNPR TVKPNANRIALDFQRGNDVAFHFNPRFNEN DFQRGNDVAFHFNPRFNENNRRVIVCNTKL R G N P R F 1 1 2 1 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 1 0 0 11 0 1272.6 P17931;G3V3R6 P17931 152 162 LGALS3 Galectin-3;Galectin yes no 3 0.0010262 49.189 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 0.88591 0.77349 29.449 8 Median 1.1088 1.0369 NaN 1 0 Median 0.92159 0.77349 5.0459 2 0 Median 0.9655 0.93923 33.399 2 0 Median 0.63317 0.52471 9.9908 2 0 Median 0.89088 0.89359 NaN 1 0 Median NaN NaN NaN 0 0 Median 84322000 42942000 41380000 28014000 13577000 14437000 35700000 18790000 16910000 9827100 4828200 4998900 3081400 1564700 1516700 7699600 4182100 3517500 0 0 0 11876 2049 12363 60420;60421;60422;60423;60424;60425;60426;60427 60620;60621;60622;60623;60624;60625;60626;60627;60628;60629;60630 60621 11 GNEEAQIFRPLK VDQPIVKTATITEPRGNEEAQIFRPLKFNT EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN R G N L K F 1 1 1 0 0 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 12 1 1400.7412 Q15029 Q15029 570 581 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 3.9942E-10 166.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 3 5 1 0.91453 0.96137 10.894 19 Median 0.97326 1.014 8.5816 2 0 Median 1.1691 1.1056 11.603 3 0 Median 0.77919 0.88341 7.0205 5 2 Median 1.1268 1.0829 4.4695 3 0 Plateau 0.87383 0.9504 5.0349 5 1 Median 0.98037 0.85131 NaN 1 0 Median 210140000 110520000 99615000 23102000 11430000 11672000 8457800 3734800 4723000 93780000 49425000 44354000 15754000 7462800 8291500 66440000 37240000 29200000 2602900 1228800 1374100 11877 2917 12364 60428;60429;60430;60431;60432;60433;60434;60435;60436;60437;60438;60439;60440;60441;60442;60443;60444;60445;60446 60631;60632;60633;60634;60635;60636;60637;60638;60639;60640;60641;60642;60643;60644;60645;60646;60647;60648;60649;60650;60651;60652;60653;60654;60655;60656 60649 26 GNEIEPNFSATR YIRPSHIHRRKFDAKGNEIEPNFSATRKVN DAKGNEIEPNFSATRKVNTGFLMSSYKVEA K G N T R K 1 1 2 0 0 0 2 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 12 0 1333.6262 A0A0A6YYH1;Q7Z6K5 A0A0A6YYH1 78 89 C15orf38-AP3S2;ARPIN Arpin yes no 2 7.8353E-05 93.096 By MS/MS 1 1.3876 1.3173 NaN 1 Median 1.3876 1.3173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16257000 8176500 8080100 16257000 8176500 8080100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11878 204 12365 60447 60657 60657 1 GNEIVLSAGSTPR VGEPTYDAEFQHFLRGNEIVLSAGSTPRIQ LRGNEIVLSAGSTPRIQGLTVEQAEAVVRL R G N P R I 1 1 1 0 0 0 1 2 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1299.6783 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 3911 3923 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.1684E-24 162.26 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 3 2 1 3 0.93863 0.84714 57.594 10 Median 0.85632 0.82862 NaN 1 0 Median 1.0844 0.86608 NaN 1 0 Median 0.95266 1.0149 19.644 2 1 Median 1.059 0.92638 16.75 2 0 Median 0.83689 0.88988 NaN 1 0 Median 0.93361 0.77476 95.363 3 2 Median 212990000 111890000 101100000 43210000 23635000 19575000 48909000 23564000 25345000 94835000 49963000 44872000 14291000 8391000 5900200 2592700 1560700 1032000 9149600 4778000 4371600 11879 2865 12366 60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458 60658;60659;60660;60661;60662;60663;60664;60665;60666;60667;60668 60661 11 GNEMSEVLR YSNSDVIIYVGCGERGNEMSEVLRDFPELT VGCGERGNEMSEVLRDFPELTMEVDGKVES R G N L R D 0 1 1 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 9 0 1033.4862 P38606 P38606 281 289 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.2467 1.078 30.768 7 Median 0.96601 0.91384 NaN 1 0 Median 1.4876 1.2858 24.929 2 0 Median 1.3879 1.4418 NaN 1 0 Median 1.0882 1.0143 32.606 2 1 Median NaN NaN NaN 0 0 Median 0.73885 0.67442 NaN 1 0 Median 41237000 18599000 22638000 18287000 8939900 9347000 16099000 6970800 9128400 5890800 2311700 3579100 849670 327960 521720 0 0 0 109900 48522 61373 11880 2276 12367;12368 60459;60460;60461;60462;60463;60464;60465 60669;60670;60671;60672;60673;60674;60675 60673 1027 7 GNENANGAPAITLLIR SKKKVEFLKQIANTKGNENANGAPAITLLI NENANGAPAITLLIREKNESNKSSFDKMIE K G N I R E 3 1 3 0 0 0 1 2 0 2 2 0 0 0 1 0 1 0 0 0 0 0 16 0 1622.874 Q9Y5B9 Q9Y5B9 93 108 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0054076 32.946 By matching By MS/MS By matching 1 1 1 1.0794 1.0438 9.1095 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90127 0.96462 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0794 1.1295 NaN 1 0 Median 1.174 0.96462 NaN 1 0 Median 2633600 1324200 1309400 0 0 0 0 0 0 601310 340600 260710 0 0 0 1917800 938330 979440 114490 45223 69271 11881 4456 12369 60466;60467;60468 60676 60676 1 GNEVLYNGFTGR QKISNLLSDYGYHLRGNEVLYNGFTGRKIT HLRGNEVLYNGFTGRKITSQIFIGPTYYQR R G N G R K 0 1 2 0 0 0 1 3 0 0 1 0 0 1 0 0 1 0 1 1 0 0 12 0 1325.6364 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 1017 1028 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0042563 65.5 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3376 1.241 14.184 4 Median 1.3688 1.3557 NaN 1 0 Median 1.3284 1.136 NaN 1 0 Median 1.3468 1.4793 NaN 1 1 Median 1.2884 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8693100 3964400 4728600 1941200 928530 1012700 2536700 1231800 1304900 3256600 1354100 1902500 958500 449980 508520 0 0 0 0 0 0 11882 671 12370 60469;60470;60471;60472 60677;60678 60677 2 GNFGGSFAGSFGGAGGHAPGVAR GGGGASFDRAIEMERGNFGGSFAGSFGGAG GSFGGAGGHAPGVARKACQIFVRNLPFDFT R G N A R K 4 1 1 0 0 0 0 9 1 0 0 0 0 3 1 2 0 0 0 1 0 0 23 0 2033.9456 A0A087X0X3;P52272;M0R2I7;M0QY96 A0A087X0X3 628 650 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 7.0236E-42 170.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 8 7 10 7 0.99819 0.91219 31.447 45 Median 1.2169 1.1552 66.052 8 1 Median 0.99386 0.84401 10.487 5 0 Median 0.90846 0.99225 26.833 8 0 Median 1.1092 0.956 12.491 7 0 Median 0.73359 0.7446 10.437 10 0 Median 1.4243 1.126 13.207 7 0 Linear 1915600000 1036100000 879530000 166160000 73211000 92952000 108290000 53443000 54843000 655120000 358720000 296400000 22660000 10879000 11780000 885830000 506300000 379530000 77525000 33494000 44031000 11883 116 12371 60473;60474;60475;60476;60477;60478;60479;60480;60481;60482;60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497;60498;60499;60500;60501;60502;60503;60504;60505;60506;60507;60508;60509;60510;60511;60512;60513;60514;60515;60516;60517 60679;60680;60681;60682;60683;60684;60685;60686;60687;60688;60689;60690;60691;60692;60693;60694;60695;60696;60697;60698;60699;60700;60701;60702;60703;60704;60705;60706;60707;60708;60709;60710;60711;60712;60713;60714;60715;60716;60717;60718;60719;60720;60721;60722;60723;60724;60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735;60736;60737;60738;60739;60740;60741 60691 63 GNFLEIK RYAILNEPFKGEMNRGNFLEIKNKFLARRF PFKGEMNRGNFLEIKNKFLARRFKLLEQAL R G N I K N 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 819.44905 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1772 1778 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.045318 42.474 By MS/MS By MS/MS By MS/MS 2 2 3 1.2395 1.1792 14.008 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.022 1.1252 6.9559 2 0 Median 1.4028 1.2943 13.165 2 0 Median NaN NaN NaN 0 0 Median 1.2395 1.0632 14.249 3 0 Median 20932000 9476500 11455000 0 0 0 0 0 0 17050000 7855400 9194200 2005500 835680 1169900 0 0 0 1876900 785480 1091400 11884 246 12372 60518;60519;60520;60521;60522;60523;60524 60742;60743;60744;60745 60745 4 GNFNYIEFTR EEVDELYREAPIDKKGNFNYIEFTRILKHG PIDKKGNFNYIEFTRILKHGAKDKDD____ K G N T R I 0 1 2 0 0 0 1 1 0 1 0 0 0 2 0 0 1 0 1 0 0 0 10 0 1259.5935 J3QRS3;P19105;O14950 J3QRS3 157 166 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2 0.00033784 108.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 2 2 1.2084 1.0177 17.465 11 Median 1.251 1.1875 8.8076 2 0 Median 1.3551 1.1316 21.763 2 0 Median 0.78248 0.77132 1.38 2 0 Median 1.2277 1.0177 NaN 1 0 Median 0.9335 0.99072 8.0067 2 0 Median 1.3836 1.0585 12.233 2 0 Median 339010000 151680000 187340000 225650000 96943000 128710000 56018000 25773000 30244000 27398000 14661000 12736000 3256600 1401900 1854700 20621000 10415000 10206000 6071000 2482100 3588900 11885 1352 12373 60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535 60746;60747;60748;60749;60750;60751;60752;60753;60754;60755 60755 10 GNFNYVEFTR EEVDEMYREAPIDKKGNFNYVEFTRILKHG PIDKKGNFNYVEFTRILKHGAKDKDD____ K G N T R I 0 1 2 0 0 0 1 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 10 0 1245.5778 P24844 P24844 152 161 MYL9 Myosin regulatory light polypeptide 9 yes yes 2 0.001604 64.04 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1234 0.99784 14.556 4 Median 1.0462 1.019 NaN 1 0 Median 1.1733 0.97708 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0757 0.87337 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5706 1.2384 NaN 1 0 Median 10398000 4561100 5836900 9250600 4014400 5236200 936330 469330 466990 0 0 0 123880 43715 80168 0 0 0 87214 33709 53505 11886 2127 12374 60536;60537;60538;60539 60756;60757;60758 60757 3 GNGQPVQLQVVWQR LLYIYDKMRLEMWERGNGQPVQLQVVWQRS RGNGQPVQLQVVWQRSRDICLKKFIKPIFT R G N Q R S 0 1 1 0 0 4 0 2 0 0 1 0 0 0 1 0 0 1 0 3 0 0 14 0 1607.8532 Q01780 Q01780 459 472 EXOSC10 Exosome component 10 yes yes 2 7.1939E-08 101.11 By MS/MS By matching By matching 1 1 1 0.96482 1.0329 27.2 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96482 1.0329 NaN 1 0 Median 1.581 1.3095 NaN 1 0 Median 0.65022 0.76114 NaN 1 0 Median NaN NaN NaN 0 0 Median 6386900 3491100 2895800 0 0 0 0 0 0 2449100 1196200 1252900 155410 59676 95738 3782400 2235300 1547100 0 0 0 11887 2691 12375 60540;60541;60542 60759;60760 60759 2 GNHAAFQADVSEAR VRLLGGPGSKEGPPRGNHAAFQADVSEARA RGNHAAFQADVSEARAARCLLEQVQACFSR R G N A R A 4 1 1 1 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 14 0 1471.6804 Q92506 Q92506 67 80 HSD17B8 Estradiol 17-beta-dehydrogenase 8 yes yes 3 0.0003568 49.298 By MS/MS By MS/MS 1 2 0.91688 0.82102 70.964 2 Median 0.52703 0.49708 NaN 1 0 Median 1.5951 1.3561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4334000 2460500 1873600 2886500 1872200 1014400 1447500 588290 859190 0 0 0 0 0 0 0 0 0 0 0 0 11888 3528 12376 60543;60544;60545 60761;60762;60763 60761 3 GNHETDNMNQIYGFEGEVK FGFKLLYPDHFHLLRGNHETDNMNQIYGFE TDNMNQIYGFEGEVKAKYTAQMYELFSEVF R G N V K A 0 0 3 1 0 1 3 3 1 1 0 1 1 1 0 0 1 0 1 1 0 0 19 0 2180.9433 P53041;H0YDU8;A8MU39 P53041 302 320 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 3 3.0399E-08 64.249 By matching By MS/MS By matching 1 1 1 1.2385 1.0654 12.895 3 Median NaN NaN NaN 0 0 Median 1.5132 1.2976 NaN 1 0 Median 1.0318 1.0182 NaN 1 0 Median 1.2385 1.0654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11614000 5199100 6414600 0 0 0 2352000 1036200 1315700 7625000 3474200 4150800 1636600 688640 948010 0 0 0 0 0 0 11889 1177 12377 60546;60547;60548 60764;60765 60764 2 GNHVIRDEEVSSADISSSSEVISQHLVSYR SQQIRVLLMELEEARGNHVIRDEEVSSADI SSSSEVISQHLVSYRNIEELQQQNQRLLVA R G N Y R N 1 2 1 2 0 1 3 1 2 3 1 0 0 0 0 8 0 0 1 4 0 0 30 1 3299.6018 P12270 P12270 512 541 TPR Nucleoprotein TPR yes yes 4;5 2.6696E-06 42.659 By MS/MS By MS/MS 2 2 1.0083 0.89256 18.148 4 Linear 0.80177 0.86433 2.3028 2 1 Median NaN NaN NaN 0 0 Median 0.84542 1.068 23.133 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24301000 10474000 13827000 10430000 4499800 5930500 0 0 0 13870000 5974300 7896100 0 0 0 0 0 0 0 0 0 11890 1978 12378 60549;60550;60551;60552 60766;60767;60768 60766 2 GNIAQMYHAPGK SVSFSPDGRKFVVTKGNIAQMYHAPGKKRE VTKGNIAQMYHAPGKKREFNAFVLDKTYFG K G N G K K 2 0 1 0 0 1 0 2 1 1 0 1 1 0 1 0 0 0 1 0 0 0 12 0 1285.6237 Q15269;A0A0B4J2E5 Q15269 116 127 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.02101 23.468 By MS/MS 1 1.1369 1.2332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1369 1.2332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3254200 1479200 1775100 0 0 0 0 0 0 3254200 1479200 1775100 0 0 0 0 0 0 0 0 0 11891 223 12379 60553 60769;60770 60769 2 GNIETTSEDGQVFSPK KPIKKKKEDDVGIERGNIETTSEDGQVFSP NIETTSEDGQVFSPKKGQKKKSIEKKRKKS R G N P K K 0 0 1 1 0 1 2 2 0 1 0 1 0 1 1 2 2 0 0 1 0 0 16 0 1707.7952 Q5T200 Q5T200 980 995 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2 0.00040045 47.288 By matching By MS/MS 1 1 0.79971 0.8034 27.901 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59394 0.65955 NaN 1 0 Median 1.0768 0.97861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8605000 4928400 3676600 0 0 0 0 0 0 7195200 4292100 2903100 1409800 636240 773520 0 0 0 0 0 0 11892 3082 12380 60554;60555 60771 60771 1 GNIIISTPEK LLTGETSTDLKLLGKGNIIISTPEKWDILS KLLGKGNIIISTPEKWDILSRRWKQRKNVQ K G N E K W 0 0 1 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 0 0 0 10 0 1070.5972 O75643 O75643 1422 1431 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0015352 64.654 By MS/MS 1 1.2358 1.1139 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2358 1.1139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5111200 2002100 3109100 0 0 0 0 0 0 0 0 0 5111200 2002100 3109100 0 0 0 0 0 0 11893 1688 12381 60556 60772;60773 60772 2 GNIIISTPEKWDILSR LLTGETSTDLKLLGKGNIIISTPEKWDILS NIIISTPEKWDILSRRWKQRKNVQNINLFV K G N S R R 0 1 1 1 0 0 1 1 0 4 1 1 0 0 1 2 1 1 0 0 0 0 16 1 1841.0047 O75643 O75643 1422 1437 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 4.2469E-05 74.76 By MS/MS By MS/MS 1 2 0.83823 1.0049 15.555 3 Median 1.2476 1.2803 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82155 0.9811 3.3942 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14223000 7258500 6964300 3323200 1519700 1803500 0 0 0 10899000 5738700 5160700 0 0 0 0 0 0 0 0 0 11894 1688 12382 60557;60558;60559 60774;60775;60776;60777;60778 60776 5 GNILIPGINEAVAAVTEEEHK MTDLILLMGSLVDKRGNILIPGINEAVAAV GINEAVAAVTEEEHKLYDDIDFDIEEFAKD R G N H K L 3 0 2 0 0 0 4 2 1 3 1 1 0 0 1 0 1 0 0 2 0 0 21 0 2203.1485 Q96KP4 Q96KP4 255 275 CNDP2 Cytosolic non-specific dipeptidase yes yes 3 0.007138 29.384 By MS/MS By matching By MS/MS 1 1 1 1.1893 1.1618 14.963 3 Median 1.1893 1.1618 NaN 1 1 Median 1.6168 1.3625 NaN 1 0 Median 1.0256 1.0103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6853300 3407200 3446200 1509000 744590 764460 119120 48129 70992 5225200 2614400 2610700 0 0 0 0 0 0 0 0 0 11895 3696 12383 60560;60561;60562 60779;60780;60781 60779 3 GNILIPGLSQKPISSFADFER LDPASGDLVIREDCRGNILIPGLSQKPISS GLSQKPISSFADFERHFLPASRNRTVGATR R G N E R H 1 1 1 1 0 1 1 2 0 3 2 1 0 2 2 3 0 0 0 0 0 0 21 1 2288.2165 Q14807;H3BRB3;H3BTH5 Q14807 203 223 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 0.00037656 28.891 By MS/MS 1 0.59699 0.63383 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59699 0.63383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3311100 1996500 1314600 0 0 0 0 0 0 3311100 1996500 1314600 0 0 0 0 0 0 0 0 0 11896 1228 12384 60563 60782;60783;60784 60784 3 GNIQLSYSDGDDCGHGKK SKNLGKFISSPMKEKGNIQLSYSDGDDCGH QLSYSDGDDCGHGKKIKTNITLVCKPGDLE K G N K K I 0 0 1 3 1 1 0 4 1 1 1 2 0 0 0 2 0 0 1 0 0 0 18 1 1949.8538 P11717 P11717 560 577 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3 1.8225E-05 48.623 By MS/MS 1 1.1047 1.05 NaN 1 Median NaN NaN NaN 0 0 Median 1.1047 1.05 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1909800 989330 920470 0 0 0 1909800 989330 920470 0 0 0 0 0 0 0 0 0 0 0 0 11897 1969 12385 60564 60785;60786 60786 2 GNKEPNPMVQLSIQDVTQESK LVVYLDRAQDLPLKKGNKEPNPMVQLSIQD PMVQLSIQDVTQESKAVYSTNCPVWEEAFR K G N S K A 0 0 2 1 0 3 2 1 0 1 1 2 1 0 2 2 1 0 0 2 0 0 21 1 2341.1584 Q9BSJ8 Q9BSJ8 495 515 ESYT1 Extended synaptotagmin-1 yes yes 3 2.826E-09 59.339 By MS/MS By matching 1 1 0.86457 0.85673 3.3515 2 Median 0.83758 0.87727 NaN 1 0 Median 0.89244 0.83666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12813000 6119000 6693900 11444000 5409700 6034700 1368400 709210 659220 0 0 0 0 0 0 0 0 0 0 0 0 11898 3816 12386 60565;60566 60787 60787 1 GNKPWISLPR NSFATRLSNIFVIGKGNKPWISLPRGKGIR FVIGKGNKPWISLPRGKGIRLTIAEERDKR K G N P R G 0 1 1 0 0 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 10 1 1166.656 P62701 P62701 231 240 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.003352 107.69 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 0.80275 0.78793 12.118 7 Median 0.80185 0.80562 3.5938 2 0 Median 0.80718 0.72722 11.34 2 0 Median 0.90133 0.95098 NaN 1 0 Median 0.90917 0.83098 15.374 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 321130000 170000000 151120000 258310000 138030000 120270000 27719000 14749000 12970000 28818000 14240000 14579000 6283000 2981700 3301400 0 0 0 0 0 0 11899 2593 12387 60567;60568;60569;60570;60571;60572;60573 60788;60789;60790;60791;60792 60790 5 GNLANVIR IVRIPKEQGVLSFWRGNLANVIRYFPTQAL GVLSFWRGNLANVIRYFPTQALNFAFKDKY R G N I R Y 1 1 2 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 855.49265 P05141;Q9H0C2;P12235;V9GYG0;P12236 P12236 73 80 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 1;2 0.0022975 128.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 14 2 1 1 2 1.4227 1.2041 14.777 26 Median 1.1292 1.0763 15.898 10 1 Median 1.5338 1.2876 7.9964 12 0 Median 1.2619 1.227 NaN 1 0 Median 1.4444 1.2053 NaN 1 0 Median 1.4499 1.4629 NaN 1 0 Median 1.4609 1.1745 NaN 1 0 Median 1368400000 561610000 806810000 407080000 188120000 218960000 886930000 341380000 545540000 21138000 10516000 10622000 23596000 9817900 13778000 22265000 9208700 13057000 7414400 2563400 4850900 11900 1977;1861;1976 12388 60574;60575;60576;60577;60578;60579;60580;60581;60582;60583;60584;60585;60586;60587;60588;60589;60590;60591;60592;60593;60594;60595;60596;60597;60598;60599;60600;60601;60602;60603 60793;60794;60795;60796;60797;60798;60799;60800;60801;60802;60803;60804;60805;60806;60807;60808;60809;60810;60811;60812;60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823;60824 60805 31 GNLEGIIR LTDLSNSLEKCKEQKGNLEGIIRQQEADIQ EKCKEQKGNLEGIIRQQEADIQNSKFSYEQ K G N I R Q 0 1 1 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 870.49232 Q14789 Q14789 2336 2343 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.0072153 81.784 By MS/MS 1 1.2405 1.0406 NaN 1 Median NaN NaN NaN 0 0 Median 1.2405 1.0406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5681300 2192700 3488500 0 0 0 5681300 2192700 3488500 0 0 0 0 0 0 0 0 0 0 0 0 11901 2900 12389 60604 60825 60825 1 GNLEMTLASR VKDLLTLVPPLVGLKGNLEMTLASRLSTAA LVGLKGNLEMTLASRLSTAANTGQIDDPQE K G N S R L 1 1 1 0 0 0 1 1 0 0 2 0 1 0 0 1 1 0 0 0 0 0 10 0 1090.5441 D6R9S7;D6RHE3;D6RDB0;Q96GZ6;D6RF72;D6R9M9;D6R9X6;Q8IVJ1;Q96JW4 D6R9S7 114 123 SLC41A3;SLC41A1;SLC41A2 Solute carrier family 41 member 3;Solute carrier family 41 member 1;Solute carrier family 41 member 2 yes no 2 0.00067788 93.111 By MS/MS 1 0.99595 0.83059 NaN 1 Median NaN NaN NaN 0 0 Median 0.99595 0.83059 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6314200 3142500 3171600 0 0 0 6314200 3142500 3171600 0 0 0 0 0 0 0 0 0 0 0 0 11902 806 12390 60605 60826 60826 1 GNLEVLLFTIQSK NTYRTVEKPPKFTEKGNLEVLLFTIQSKMR EKGNLEVLLFTIQSKMRANNQKVYMPREGK K G N S K M 0 0 1 0 0 1 1 1 0 1 3 1 0 1 0 1 1 0 0 1 0 0 13 0 1460.8239 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 360 372 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.031759 26.673 By matching By MS/MS By matching By matching 1 1 1 1 1.2107 1.1561 9.7287 4 Median NaN NaN NaN 0 0 Median 1.3314 1.1632 NaN 1 0 Median 1.0098 1.1207 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.101 1.149 NaN 1 0 Median 1.5764 1.3865 NaN 1 0 Median 7376700 3238400 4138200 0 0 0 5536200 2348400 3187800 1572900 780360 792560 0 0 0 206930 80532 126400 60627 29145 31482 11903 2681;1512 12391 60606;60607;60608;60609 60827 60827 1 GNLEVVHHR TVVPQDTKLVLQMPRGNLEVVHHRALVLAQ VLQMPRGNLEVVHHRALVLAQIRKWLDKLM R G N H R A 0 1 1 0 0 0 1 1 2 0 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1059.5574 O95163;F5H2T0 O95163 714 722 IKBKAP Elongator complex protein 1 yes no 2 0.0068944 53.166 By MS/MS 1 1.2301 1.0837 NaN 1 Median NaN NaN NaN 0 0 Median 1.2301 1.0837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 465200 193510 271690 0 0 0 465200 193510 271690 0 0 0 0 0 0 0 0 0 0 0 0 11904 1749 12392 60610 60828 60828 1 GNLGAGNGNLQGPR PPPSFHLGGPAVGPRGNLGAGNGNLQGPRH RGNLGAGNGNLQGPRHMQKGRVETSRVVHI R G N P R H 1 1 3 0 0 1 0 5 0 0 2 0 0 0 1 0 0 0 0 0 0 0 14 0 1323.6644 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;B3KM87;D6RE02;D6RIA2;D6RBI2;D6RAY2;D6RAM9 P43243 374 387 MATR3 Matrin-3 yes no 2 3.0527E-16 182.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 3 0.95525 0.9467 24.021 9 Median NaN NaN NaN 0 0 Median 1.7338 1.462 NaN 1 0 Median 0.88559 0.94595 31.774 3 0 Median 1.4013 1.1927 NaN 1 1 Median 0.90709 0.93533 1.709 2 0 Median 1.0663 0.87705 13.482 2 0 Median 36413000 17096000 19317000 0 0 0 5356600 1516400 3840100 7263900 4063600 3200300 2471500 1029200 1442400 16272000 8235100 8036700 5049500 2251500 2797900 11905 297 12393 60611;60612;60613;60614;60615;60616;60617;60618;60619;60620 60829;60830;60831;60832;60833;60834;60835;60836;60837;60838;60839;60840;60841 60835 13 GNLGVYQETR RLDRLSGLADQMVARGNLGVYQETRERLAM QMVARGNLGVYQETRERLAMRLKGLGCQTL R G N T R E 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1135.5622 O95400 O95400 213 222 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 2 0.00072596 101.9 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1026 1.0537 13.825 4 Median 1.1257 1.1232 NaN 1 0 Median 0.96543 0.82506 NaN 1 0 Median 1.08 1.0839 NaN 1 0 Median 1.1869 1.0245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16025000 7905800 8119100 2510200 1243300 1266900 1393600 923050 470510 4583000 2102300 2480700 7538100 3637100 3901000 0 0 0 0 0 0 11906 1771 12394 60621;60622;60623;60624 60842;60843;60844;60845;60846 60845 5 GNLLHFPSSQGEEEKEKLEGDHTIR ENEARSEDPPTTPIRGNLLHFPSSQGEEEK GEEEKEKLEGDHTIRQSQQPMKPISPVKDP R G N I R Q 0 1 1 1 0 1 5 3 2 1 3 2 0 1 1 2 1 0 0 0 0 0 25 2 2849.3944 A6NNK5;Q12888 A6NNK5 1065 1089 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 6 0.052025 13.248 By MS/MS 1 0.57384 0.75814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57384 0.75814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4650000 2629000 2021100 0 0 0 0 0 0 4650000 2629000 2021100 0 0 0 0 0 0 0 0 0 11907 530 12395 60625 60847 60847 0 GNLMAAGQNLQSSER NVPPVPGNILPPEVRGNLMAAGQNLQSSER GNLMAAGQNLQSSERSEMIATWSPAVRTLR R G N E R S 2 1 2 0 0 2 1 2 0 0 2 0 1 0 0 2 0 0 0 0 0 0 15 0 1574.7471 Q6ZW49 Q6ZW49 310 324 PAXIP1 PAX-interacting protein 1 yes yes 2 1.5012E-07 136.53 By MS/MS 1 1.3312 1.4635 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3312 1.4635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15962000 7563100 8399300 0 0 0 0 0 0 15962000 7563100 8399300 0 0 0 0 0 0 0 0 0 11908 3203 12396 60626 60848 60848 1 GNLPTSGNISGFIR MAQVLCELFQTSPQRGNLPTSGNISGFIRR RGNLPTSGNISGFIRRLFLQLMLEDEKVTM R G N I R R 0 1 2 0 0 0 0 3 0 2 1 0 0 1 1 2 1 0 0 0 0 0 14 0 1431.747 A0A3B3IUB9;Q9NR09 Q9NR09 3796 3809 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.054664 23.851 By MS/MS 1 0.74251 0.63197 NaN 1 Median NaN NaN NaN 0 0 Median 0.74251 0.63197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2576800 1654900 921890 0 0 0 2576800 1654900 921890 0 0 0 0 0 0 0 0 0 0 0 0 11909 4073;445 12397 60627 60849 60849 1 GNLQNLER DNDLKSRASAYNNLKGNLQNLERKNAGSLL SAYNNLKGNLQNLERKNAGSLLTRSLAEIV K G N E R K 0 1 2 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 942.48829 P21283;E7EV59 P21283 148 155 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 0.0054884 98.299 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11910 2087 12398 60628 60850 60850 1 GNLVYIIDFGLAK RDVKPDNFLMGLGKKGNLVYIIDFGLAKKY KKGNLVYIIDFGLAKKYRDARTHQHIPYRE K G N A K K 1 0 1 1 0 0 0 2 0 2 2 1 0 1 0 0 0 0 1 1 0 0 13 0 1421.7919 P49674;H0Y645;B0QY35;B0QY34;J3QQI9;B0QY36;H0Y2N6;P48730;H7BYT1 P49674 142 154 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 2 0.016991 32.523 By MS/MS By matching 1 1 1.731 1.6053 34.025 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2411 1.2621 NaN 1 0 Median 2.4142 2.042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1874800 901180 973580 0 0 0 0 0 0 1572000 814420 757610 302740 86761 215980 0 0 0 0 0 0 11911 2390;1248 12399 60629;60630 60851 60851 1 GNNNVMSNYEAYKPSTGAMGDR GYRERPGLGSENMDRGNNNVMSNYEAYKPS NYEAYKPSTGAMGDRLTAMKAAFQSQYKSH R G N D R L 2 1 4 1 0 0 1 3 0 0 0 1 2 0 1 2 1 0 2 1 0 0 22 1 2375.027 Q86XP3;A0A0A0MSJ0 Q86XP3 674 695 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 3.2168E-09 52.483 By MS/MS By MS/MS 2 1 0.74181 0.82431 7.2195 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72298 0.8193 3.5979 2 0 Median 0.75839 0.72882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29977000 16211000 13766000 0 0 0 0 0 0 27553000 14893000 12660000 2423800 1318200 1105700 0 0 0 0 0 0 11912 3302 12400 60631;60632;60633 60852;60853;60854 60853 3 GNNVLYISTQK VNGQLKNKYGDAFIRGNNVLYISTQKRRM_ AFIRGNNVLYISTQKRRM____________ R G N Q K R 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1235.651 P62312 P62312 67 77 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2;3 0.00011336 130.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 2 1.193 1.0138 13.462 10 Median 1.193 1.0588 1.8557 2 0 Median 1.1591 0.94865 9.6035 2 1 Median 0.96824 0.98411 NaN 1 0 Median 1.2329 0.95976 7.5333 2 0 Median 0.98723 1.0435 NaN 1 0 Median 1.3546 1.1072 33.475 2 0 Median 313340000 137620000 175720000 70452000 22235000 48216000 55123000 23694000 31429000 108360000 53670000 54690000 27623000 13014000 14609000 42140000 20642000 21498000 9643200 4360500 5282700 11913 2584 12401 60634;60635;60636;60637;60638;60639;60640;60641;60642;60643 60855;60856;60857;60858;60859;60860;60861;60862;60863;60864;60865;60866;60867;60868;60869;60870;60871;60872 60866 18 GNNVLYISTQKR VNGQLKNKYGDAFIRGNNVLYISTQKRRM_ FIRGNNVLYISTQKRRM_____________ R G N K R R 0 1 2 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 12 1 1391.7521 P62312 P62312 67 78 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2;3 0.00014444 87.258 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 2 1.1839 1.1874 5.5214 11 Median 1.2463 1.1955 9.012 4 0 Median 1.3409 1.16 4.4563 2 0 Median 0.98324 1.2149 3.2685 2 0 Median 1.2102 1.1874 NaN 1 0 Median 0.99568 1.1748 2.1826 2 0 Median NaN NaN NaN 0 0 Median 63025000 28670000 34355000 18526000 7840100 10686000 16293000 6956700 9336100 12701000 6311000 6389900 3529000 1559400 1969500 11976000 6002800 5973400 0 0 0 11914 2584 12402 60644;60645;60646;60647;60648;60649;60650;60651;60652;60653;60654 60873;60874;60875;60876;60877;60878;60879;60880;60881;60882;60883;60884;60885 60874 13 GNPFQFYLTR ETSGEGQDIWDMLDKGNPFQFYLTRVSGVK DMLDKGNPFQFYLTRVSGVKPKYNSGALHI K G N T R V 0 1 1 0 0 1 0 1 0 0 1 0 0 2 1 0 1 0 1 0 0 0 10 0 1241.6193 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;G3V4W8;G3V5H9 G3V2F4 161 170 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 2 0.0035742 56.258 By MS/MS 1 0.97107 1.0177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97107 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5140300 2681600 2458700 0 0 0 0 0 0 5140300 2681600 2458700 0 0 0 0 0 0 0 0 0 11915 869 12403 60655 60886 60886 1 GNPGFSGLNLNIPILSSLGSSAPSESHPSDFQR STSPSLEMKIHNFLKGNPGFSGLNLNIPIL GSSAPSESHPSDFQRGPTSTSIDNIDGTPV K G N Q R G 1 1 3 1 0 1 1 4 1 2 4 0 0 2 4 8 0 0 0 0 0 0 33 0 3381.6589 Q5VT52 Q5VT52 678 710 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 0.060216 14.374 By MS/MS 1 0.48261 0.51531 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48261 0.51531 NaN 1 1 Median NaN NaN NaN 0 0 Median 1387700 1046600 341100 0 0 0 0 0 0 0 0 0 0 0 0 1387700 1046600 341100 0 0 0 11916 3110 12404 60656 60887 60887 1 GNPTVEVDLFTSK MSILKIHAREIFDSRGNPTVEVDLFTSKGL SRGNPTVEVDLFTSKGLFRAAVPSGASTGI R G N S K G 0 0 1 1 0 0 1 1 0 0 1 1 0 1 1 1 2 0 0 2 0 0 13 0 1405.7089 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y798;A0A2R8YEG5 P06733 16 28 ENO1 Alpha-enolase;Enolase yes no 2 6.603E-07 132.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 9 4 3 2 4 0.9978 0.88694 26.302 27 Median 1.0082 0.9145 8.2882 7 0 Median 0.9978 0.84571 4.9743 9 0 Median 0.89918 0.96995 24.212 3 0 Median 1.0109 0.91269 14.93 3 0 Median 1.0236 1.0108 0.57228 2 0 Median 0.90096 0.73912 82.127 3 0 Median 985130000 475470000 509660000 533550000 253650000 279900000 189650000 93134000 96520000 201010000 98291000 102720000 48900000 24535000 24365000 11521000 5641800 5879200 487300 214160 273140 11917 1873 12405 60657;60658;60659;60660;60661;60662;60663;60664;60665;60666;60667;60668;60669;60670;60671;60672;60673;60674;60675;60676;60677;60678;60679;60680;60681;60682;60683;60684;60685;60686 60888;60889;60890;60891;60892;60893;60894;60895;60896;60897;60898;60899;60900;60901;60902;60903;60904;60905;60906;60907;60908;60909;60910;60911;60912;60913;60914;60915;60916;60917;60918;60919;60920;60921 60892 34 GNPTVEVDLYTAK MSIEKIWAREILDSRGNPTVEVDLYTAKGL SRGNPTVEVDLYTAKGLFRAAVPSGASTGI R G N A K G 1 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 2 0 1 2 0 0 13 0 1405.7089 P09104;F5H0C8;F5H1C3 P09104 16 28 ENO2 Gamma-enolase;Enolase yes no 2 0.00031646 88.596 By MS/MS 1 0.80717 0.74754 NaN 1 Median 0.80717 0.74754 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12784000 7837100 4946500 12784000 7837100 4946500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11918 1911 12406 60687 60922 60922 1 GNQLQEFAAMLMPHQK AYGILEKMYLDRIIRGNQLQEFAAMLMPHQ NQLQEFAAMLMPHQKATTADGSSILDRAVI R G N Q K A 2 0 1 0 0 3 1 1 1 0 2 1 2 1 1 0 0 0 0 0 0 0 16 0 1841.8917 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 275 290 COPS4 COP9 signalosome complex subunit 4 yes no 3 0.056253 10.196 By matching By matching By MS/MS By matching 1 1 1 1 0.95989 0.87106 22.001 4 Median 0.90538 0.8676 NaN 1 0 Median 1.0177 0.87453 NaN 1 0 Median 1.0467 1.168 NaN 1 0 Median 0.81206 0.6822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4147400 2282300 1865100 434260 190090 244160 1646300 912750 733560 1286500 629640 656870 780340 549850 230490 0 0 0 0 0 0 11919 813 12407 60688;60689;60690;60691 60923 60923 1 GNRPVILTYHDIGLNHK TTHGVVHVTIRGLPKGNRPVILTYHDIGLN RPVILTYHDIGLNHKSCFNAFFNFEDMQEI K G N H K S 0 1 2 1 0 0 0 2 2 2 2 1 0 0 1 0 1 0 1 1 0 0 17 1 1946.0486 Q9UGV2;Q5TH30;Q5TH29 Q9UGV2 52 68 NDRG3 Protein NDRG3 yes no 3;4 1.4893E-07 89.506 By MS/MS By MS/MS 2 1 0.77452 0.83006 31.918 3 Median 0.66183 0.70931 22.233 2 0 Median NaN NaN NaN 0 0 Median 1.0095 1.1476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62936000 35824000 27112000 56936000 32966000 23970000 0 0 0 5999800 2858500 3141300 0 0 0 0 0 0 0 0 0 11920 4267 12408 60692;60693;60694 60924;60925;60926;60927 60924 4 GNRPVILTYHDIGMNHK TLHGSVHVTLCGTPKGNRPVILTYHDIGMN RPVILTYHDIGMNHKTCYNPLFNYEDMQEI K G N H K T 0 1 2 1 0 0 0 2 2 2 1 1 1 0 1 0 1 0 1 1 0 0 17 1 1964.005 Q92597;E5RIR1;E5RGM5;E5RIV1;E5RIM2;E5RI76;E5RH82;E5RK17 Q92597 54 70 NDRG1 Protein NDRG1 yes no 3;4 4.1684E-14 113.47 By MS/MS By matching 3 1 0.94766 1.0696 13.415 4 Linear 0.99665 1.0681 13.349 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97089 0.85693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62993000 32822000 30170000 62536000 32592000 29944000 0 0 0 0 0 0 456570 229970 226600 0 0 0 0 0 0 11921 3540 12409 60695;60696;60697;60698 60928;60929;60930;60931 60929 4 GNSEGNTWLTAFVLK YKHFDGSYSTFGEHRGNSEGNTWLTAFVLK GNSEGNTWLTAFVLKSFAQARGYIFIDEAH R G N L K S 1 0 2 0 0 0 1 2 0 0 2 1 0 1 0 1 2 1 0 1 0 0 15 0 1635.8257 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1037 1051 yes yes 2 0.054186 33.886 By MS/MS 1 0.11212 0.1079 NaN 1 Median 0.11212 0.1079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4073900 3642800 431150 4073900 3642800 431150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 11922 734 12410 60699 60932 60932 1 GNSIIMLEALER ATSGQQNNIGMVVIRGNSIIMLEALERV__ VIRGNSIIMLEALERV______________ R G N E R V 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 0 0 0 12 0 1344.7071 Q49AN9;F5H013;P62308;A8MWD9 Q49AN9 52 63 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.0046806 63.283 By MS/MS 2 1.4455 1.4123 14.503 2 Median 1.4455 1.4123 14.503 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4492700 1730100 2762600 4492700 1730100 2762600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11923 547 12411 60700;60701 60933;60934 60933 2 GNSIIMLEALERV ATSGQQNNIGMVVIRGNSIIMLEALERV__ IRGNSIIMLEALERV_______________ R G N R V - 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 1 0 0 13 1 1443.7755 Q49AN9;F5H013;P62308;A8MWD9 Q49AN9 52 64 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.0007728 70.977 By matching By matching By MS/MS 1 1 1 1.1373 1.0609 14.456 3 Median 1.1571 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1373 1.0609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1369 0.84844 NaN 1 0 Median 11650000 5178200 6471600 201370 89026 112350 0 0 0 91120 38752 52368 0 0 0 0 0 0 11357000 5050400 6306800 11924 547 12412 60702;60703;60704 60935;60936 60936 2 GNSLFFR IDCWCMLQKEGNMSRGNSLFFRKVPFGKTY QKEGNMSRGNSLFFRKVPFGKTYCCDLKML R G N F R K 0 1 1 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 7 0 839.42899 Q9Y6C9 Q9Y6C9 281 287 MTCH2 Mitochondrial carrier homolog 2 yes yes 2 0.0073411 89.673 By MS/MS By matching By matching 1 1 1 1.1514 1.0764 31.046 3 Plateau 1.1514 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57196 0.59304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1455 0.9286 NaN 1 0 Median 32829000 14985000 17844000 31251000 14197000 17054000 0 0 0 663400 384440 278960 0 0 0 0 0 0 914040 403610 510430 11925 4488 12413 60705;60706;60707 60937;60938 60938 2 GNSLQEILER VEVKKSQHKYVIGPKGNSLQEILERTGVSV VIGPKGNSLQEILERTGVSVEIPPSDSISE K G N E R T 0 1 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1157.6041 Q00341;A0A024R4E5;H7C0A4 Q00341 315 324 HDLBP Vigilin yes no 2 0.013584 56.432 By MS/MS 1 1.2935 1.2507 NaN 1 Median 1.2935 1.2507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5188500 1631700 3556800 5188500 1631700 3556800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11926 4 12414 60708 60939 60939 1 GNSLTLIDLPGHESLR SITDSCAVYRVNNNRGNSLTLIDLPGHESL NSLTLIDLPGHESLRLQFLERFKSSARAIV R G N L R L 0 1 1 1 0 0 1 2 1 1 4 0 0 0 1 2 1 0 0 0 0 0 16 0 1720.9108 Q9Y5M8 Q9Y5M8 110 125 SRPRB Signal recognition particle receptor subunit beta yes yes 3 0.00064712 37.083 By MS/MS By MS/MS 1 1 1.1359 1.077 3.3205 2 Median 1.1246 1.052 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1473 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14728000 6607800 8120200 6760900 3205700 3555100 0 0 0 7967100 3402100 4565100 0 0 0 0 0 0 0 0 0 11927 4463 12415 60709;60710 60940;60941;60942;60943 60943 4 GNTAAQMAQILSFNK MSMSCALAMVYMGAKGNTAAQMAQILSFNK GNTAAQMAQILSFNKSGGGGDIHQGFQSLL K G N N K S 3 0 2 0 0 2 0 1 0 1 1 1 1 1 0 1 1 0 0 0 0 0 15 0 1592.7981 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YDD0;A0A2R8Y517 A0A024QZX5 51 65 SERPINB6 Serpin B6 yes no 2 1.2334E-07 140.63 By MS/MS By matching 5 4 0.99091 0.93064 26.652 9 Median 0.99091 0.93064 8.5657 5 0 Median 0.91242 0.85296 42.138 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39161000 19524000 19637000 37202000 18566000 18636000 1958600 957350 1001200 0 0 0 0 0 0 0 0 0 0 0 0 11928 1 12416;12417 60711;60712;60713;60714;60715;60716;60717;60718;60719 60944;60945;60946;60947 60945 0 4 GNTAAYLLYAFTR LNDYIFSFDKMLDDRGNTAAYLLYAFTRIR DRGNTAAYLLYAFTRIRSIARLANIDEEML R G N T R I 3 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 2 0 2 0 0 0 13 0 1459.746 P54136 P54136 528 540 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.00091964 62.303 By MS/MS By matching By matching 2 1 1 1.1313 1.0075 15.42 4 Median 1.057 1.0297 21.626 2 0 Median 1.2983 1.1243 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0556 0.90275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8772700 3875800 4897000 3657800 1653500 2004300 4830900 2089400 2741500 0 0 0 284030 132870 151160 0 0 0 0 0 0 11929 2480 12418 60720;60721;60722;60723 60948;60949 60949 2 GNTDNKEYAVNEVVAGIK VDSILEDYANYKKSRGNTDNKEYAVNEVVA DNKEYAVNEVVAGIKEYFNVMLGTQLLYKF R G N I K E 2 0 3 1 0 0 2 2 0 1 0 2 0 0 0 0 1 0 1 3 0 0 18 1 1919.9589 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21 B3KTM8 230 247 MORF4L1 Mortality factor 4-like protein 1 yes no 3 1.4156E-06 77.221 By MS/MS By matching 2 1 0.96605 1.0173 4.5056 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94965 1.0135 0.53487 2 0 Median 1.053 0.93763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41731000 19823000 21908000 0 0 0 0 0 0 39433000 18653000 20779000 2298600 1170100 1128400 0 0 0 0 0 0 11930 585 12419 60724;60725;60726 60950;60951;60952;60953 60950 4 GNTHTEILK VSIASAFAMLSLGAKGNTHTEILKGLGFNL LSLGAKGNTHTEILKGLGFNLTELAEAEIH K G N L K G 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1011.5349 CON__P34955 CON__P34955 92 100 yes yes 2 0.0020935 87.806 By MS/MS 2 0.030956 0.026333 36.22 2 Median NaN NaN NaN 0 0 Median 0.030956 0.026333 36.22 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10302000 9793000 508690 0 0 0 10302000 9793000 508690 0 0 0 0 0 0 0 0 0 0 0 0 + 11931 763 12420 60727;60728 60954;60955 60954 2 GNTISPIIK FKGKRIVLVDDSIVRGNTISPIIKLLKESG DDSIVRGNTISPIIKLLKESGAKEVHIRVA R G N I K L 0 0 1 0 0 0 0 1 0 3 0 1 0 0 1 1 1 0 0 0 0 0 9 0 941.55458 Q06203 Q06203 395 403 PPAT Amidophosphoribosyltransferase yes yes 2 0.034001 35.295 By MS/MS By matching By matching 1 1 1 0.93192 0.86134 7.7506 3 Median NaN NaN NaN 0 0 Median 1.1402 0.96894 NaN 1 0 Median 0.86132 0.86134 NaN 1 0 Median 0.93192 0.83715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17160000 8825500 8334900 0 0 0 6423200 2915800 3507500 2277200 1297800 979320 8460000 4611900 3848100 0 0 0 0 0 0 11932 2722 12421 60729;60730;60731 60956;60957 60956 2 GNTSGSHIVNHLVR VVYCNTSKKWFCNGRGNTSGSHIVNHLVRA RGNTSGSHIVNHLVRAKCKEVTLHKDGPLG R G N V R A 0 1 2 0 0 0 0 2 2 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1489.775 Q92900 Q92900 149 162 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 5.5345E-09 146.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 2 2 2 1.091 0.98693 37.884 12 Median 1.1099 1.0713 NaN 1 0 Median 1.0081 0.84009 15.65 4 0 Median 1.1745 1.2901 NaN 1 0 Median 1.0554 0.89772 1.8033 2 0 Median 1.7371 1.828 7.7231 2 0 Median 1.5718 1.4566 73.366 2 0 Median 73555000 35882000 37673000 7652400 3616100 4036300 48627000 23973000 24654000 3281200 1461700 1819500 9147100 4274700 4872400 3271000 1665400 1605500 1576500 890970 685500 11933 3564 12422 60732;60733;60734;60735;60736;60737;60738;60739;60740;60741;60742;60743 60958;60959;60960;60961;60962;60963;60964;60965;60966;60967;60968;60969;60970;60971;60972 60964 15 GNVAYATSTGGIVNK QKNLGTVGAVALDCKGNVAYATSTGGIVNK GNVAYATSTGGIVNKMVGRVGDSPCLGAGG K G N N K M 2 0 2 0 0 0 0 3 0 1 0 1 0 0 0 1 2 0 1 2 0 0 15 0 1450.7416 Q7L266 Q7L266 178 192 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes yes 2 1.1821E-19 139.31 By MS/MS 2 1.187 0.9752 NaN 1 Median NaN NaN NaN 0 0 Median 1.187 0.9752 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27936000 12319000 15617000 0 0 0 27936000 12319000 15617000 0 0 0 0 0 0 0 0 0 0 0 0 11934 3220 12423 60744;60745 60973;60974 60973 2 GNVFSSPTAAGTPNK VPAEGVRNIKSMWEKGNVFSSPTAAGTPNK GNVFSSPTAAGTPNKETAGLKVGVSSRINE K G N N K E 2 0 2 0 0 0 0 2 0 0 0 1 0 1 2 2 2 0 0 1 0 0 15 0 1446.7103 E9PGZ1;E7EX44;Q05682 E9PGZ1 458 472 CALD1 Caldesmon yes no 2 6.6985E-10 107.85 By MS/MS By MS/MS 1 1 0.74743 0.70608 7.8744 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72455 0.74651 NaN 1 0 Median 0.77104 0.66784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13390000 7734300 5655300 0 0 0 0 0 0 7701100 4675500 3025700 5688400 3058800 2629600 0 0 0 0 0 0 11935 928 12424 60746;60747 60975;60976;60977 60975 3 GNVFSSPTAAGTPNKETAGLK VPAEGVRNIKSMWEKGNVFSSPTAAGTPNK PTAAGTPNKETAGLKVGVSSRINEWLTKTP K G N L K V 3 0 2 0 0 0 1 3 0 0 1 2 0 1 2 2 3 0 0 1 0 0 21 1 2046.0382 E9PGZ1;E7EX44;Q05682 E9PGZ1 458 478 CALD1 Caldesmon yes no 3 2.3361E-08 69.081 By MS/MS By MS/MS 1 1 0.63257 0.67252 2.3392 2 Median 0.64338 0.66149 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.62194 0.68374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44255000 26719000 17536000 9918700 6472600 3446100 0 0 0 34336000 20247000 14089000 0 0 0 0 0 0 0 0 0 11936 928 12425 60748;60749 60978;60979 60979 2 GNVGFVFTK LENNPALEKLLPHIRGNVGFVFTKEDLTEI LLPHIRGNVGFVFTKEDLTEIRDMLLANKV R G N T K E 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 2 0 0 9 0 967.51272 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;F8VWV4;F8VS58;F8VZS0 P05388 84 92 RPLP0 60S acidic ribosomal protein P0 yes no 2 0.0024827 71.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1.2259 1.0788 8.635 7 Median 1.0809 0.97696 NaN 1 0 Median 1.2079 1.013 5.6567 2 0 Median 1.2119 1.1672 NaN 1 0 Median 1.3061 1.097 2.3598 2 0 Median 1.2259 1.2266 NaN 1 0 Median NaN NaN NaN 0 0 Median 224310000 103680000 120640000 122450000 57629000 64825000 67412000 30619000 36793000 18543000 8288400 10254000 5886200 2437100 3449100 10020000 4703700 5316100 0 0 0 11937 1865 12426 60750;60751;60752;60753;60754;60755;60756 60980;60981;60982;60983;60984;60985;60986;60987;60988 60980 9 GNVGFVFTKEDLTEIR LENNPALEKLLPHIRGNVGFVFTKEDLTEI NVGFVFTKEDLTEIRDMLLANKVPAAARAG R G N I R D 0 1 1 1 0 0 2 2 0 1 1 1 0 2 0 0 2 0 0 2 0 0 16 1 1823.9418 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VQY6;F8VRK7;F8VW21;F8VWV4;F8VS58;F8VZS0 P05388 84 99 RPLP0 60S acidic ribosomal protein P0 yes no 3 4.2355E-05 53.777 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0427 1.069 19.916 4 Median 0.97217 0.97687 NaN 1 0 Median 0.87785 0.78718 NaN 1 0 Median 1.1183 1.2172 NaN 1 0 Median 1.2397 1.1699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23067000 11477000 11590000 12370000 6051600 6318100 5672700 3353800 2318900 4640700 1919800 2720900 384030 151480 232560 0 0 0 0 0 0 11938 1865 12427 60757;60758;60759;60760 60989;60990;60991;60992 60989 4 GNVGIGGSAVPPPPIK IARKPAKPQPKLKPKGNVGIGGSAVPPPPI NVGIGGSAVPPPPIKHNMNIGTWDEKGSVV K G N I K H 1 0 1 0 0 0 0 4 0 2 0 1 0 0 4 1 0 0 0 2 0 0 16 0 1458.8195 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 A0A024R7W5 205 220 YTHDF3 YTH domain-containing family protein 3 yes no 2 0.0012542 38.634 By MS/MS By matching 1 1 0.58431 0.53512 28.806 2 Median 0.4548 0.43651 NaN 1 0 Median 0.7507 0.65601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5259600 3691300 1568300 4320100 3166300 1153800 939570 525010 414560 0 0 0 0 0 0 0 0 0 0 0 0 11939 6 12428 60761;60762 60993 60993 1 GNVLVLSQHK HGRPEDKSKIVAEIRGNVLVLSQHKFASNV VAEIRGNVLVLSQHKFASNVVEKCVTHASR R G N H K F 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 1 0 0 0 2 0 0 10 0 1093.6244 Q5T1Z4;Q5T1Z8;H0YDK8;E9PR38;H0YEH2;Q14671;H0YC97;H0YDC5 Q5T1Z4 1070 1079 PUM1 Pumilio homolog 1 yes no 2 0.01948 37.344 By MS/MS 1 1.9544 1.6534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9544 1.6534 NaN 1 0 Median 1113400 350230 763210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1113400 350230 763210 11940 3081 12429 60763 60994 60994 1 GNVQVVIPFLTESYSSSQDPPEK YYRKPLLESGTLGTKGNVQVVIPFLTESYS FLTESYSSSQDPPEKSIPICTLKNFPNAIE K G N E K S 0 0 1 1 0 2 2 1 0 1 1 1 0 1 3 4 1 0 1 3 0 0 23 0 2520.2384 P22314 P22314 605 627 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 6.5909E-16 71.879 By MS/MS 4 0.63085 0.61086 14.212 4 Median 0.63085 0.61086 14.212 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23346000 13602000 9744300 23346000 13602000 9744300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11941 2100 12430 60764;60765;60766;60767 60995;60996;60997;60998;60999;61000;61001 60999 7 GNVVPSPLPTR LDTPRSRERSPSPLRGNVVPSPLPTRRTRT SPLRGNVVPSPLPTRRTRTFSATVRASQGP R G N T R R 0 1 1 0 0 0 0 1 0 0 1 0 0 0 3 1 1 0 0 2 0 0 11 0 1135.635 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 36 46 CARHSP1 Calcium-regulated heat stable protein 1 yes no 2 0.00018718 76.827 By MS/MS By MS/MS 1 1 0.60104 0.54315 24.32 2 Median 0.46465 0.45733 NaN 1 0 Median 0.77747 0.64506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9605700 6378900 3226800 6113600 4338000 1775600 3492100 2040900 1451200 0 0 0 0 0 0 0 0 0 0 0 0 11942 4393 12431 60768;60769 61002;61003;61004;61005 61004 4 GNVVPSPLPTRR LDTPRSRERSPSPLRGNVVPSPLPTRRTRT PLRGNVVPSPLPTRRTRTFSATVRASQGPV R G N R R T 0 2 1 0 0 0 0 1 0 0 1 0 0 0 3 1 1 0 0 2 0 0 12 1 1291.7361 Q9Y2V2;H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9 Q9Y2V2 36 47 CARHSP1 Calcium-regulated heat stable protein 1 yes no 2;3 0.00012952 75.695 By MS/MS By MS/MS 2 2 0.64153 0.62821 25.683 4 Median 0.4759 0.49882 14.404 2 0 Median 0.8543 0.75449 7.6925 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12637000 7594700 5041800 7851200 5056300 2794900 4785400 2538500 2246900 0 0 0 0 0 0 0 0 0 0 0 0 11943 4393 12432 60770;60771;60772;60773 61006;61007;61008;61009;61010;61011 61010 6 GNVYIHPTAK PERLAKHTPGGPWIRGNVYIHPTAKVAPSA GPWIRGNVYIHPTAKVAPSAVLGPNVSIGK R G N A K V 1 0 1 0 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 1 0 0 10 0 1098.5822 A0A087WUI8;Q96IJ6 A0A087WUI8 285 294 GMPPA Mannose-1-phosphate guanyltransferase alpha yes no 2 0.014222 39.022 By MS/MS 1 1.0516 0.91857 NaN 1 Median NaN NaN NaN 0 0 Median 1.0516 0.91857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 708060 356800 351260 0 0 0 708060 356800 351260 0 0 0 0 0 0 0 0 0 0 0 0 11944 31 12433 60774 61012 61012 1 GNWAHSGFPEIAFGR DALIGVSELGLVFMKGNWAHSGFPEIAFGR GNWAHSGFPEIAFGRYSDSLVQKGYKVARV K G N G R Y 2 1 1 0 0 0 1 3 1 1 0 0 0 2 1 1 0 1 0 0 0 0 15 0 1644.7797 P52701;A0A494C0M1;A0A087WWJ1 P52701 454 468 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 0.0015068 53.569 By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 0.98384 0.8787 11.862 6 Median 0.8585 0.80941 NaN 1 0 Median 0.98384 0.87307 4.3737 2 0 Median 0.77964 0.85744 NaN 1 0 Median 1.1903 1.044 10.032 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16113000 8337300 7775800 7427200 3781400 3645800 751690 332590 419100 7254800 3914700 3340100 679450 308630 370820 0 0 0 0 0 0 11945 2453 12434 60775;60776;60777;60778;60779;60780;60781 61013;61014;61015;61016;61017;61018 61014 6 GNWDEQFDKENTEER DPLTRLVLVNAVYFRGNWDEQFDKENTEER GNWDEQFDKENTEERLFKVSKNEEKPVQMM R G N E R L 0 1 2 2 0 1 4 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 15 1 1895.7922 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 175 189 SERPINB6 Serpin B6 yes no 3 0.0042218 44.196 By MS/MS By MS/MS By matching 1 2 1 1.2615 1.1832 11.315 3 Median NaN NaN NaN 0 0 Median 1.2868 1.1906 0.88344 2 0 Median 0.86207 0.97898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8453000 3650600 4802400 0 0 0 4554400 1842700 2711700 3898600 1807900 2090700 0 0 0 0 0 0 0 0 0 11946 1 12435 60782;60783;60784;60785 61019;61020 61019 2 GNYDEGFGHRPHK RIYCKPHFNQLFKSKGNYDEGFGHRPHKDL SKGNYDEGFGHRPHKDLWASKNENEEILER K G N H K D 0 1 1 1 0 0 1 3 2 0 0 1 0 1 1 0 0 0 1 0 0 0 13 1 1512.6858 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 450 462 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.067214 12.878 By MS/MS By matching 1 1 0.83347 0.81946 11.094 2 Median NaN NaN NaN 0 0 Median 0.75513 0.75764 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91995 0.88634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504000 816810 687160 0 0 0 1030200 557250 472970 0 0 0 473760 259570 214190 0 0 0 0 0 0 11947 4273 12436 60786;60787 61021 61021 1 GPAAAQGSAAAPAEPK MAENGESSGPPRPSRGPAAAQGSAAAPAEP PAAAQGSAAAPAEPKIIKVTVKTPKEKEEF R G P P K I 7 0 0 0 0 1 1 2 0 0 0 1 0 0 3 1 0 0 0 0 0 0 16 0 1392.6997 Q9UHD9 Q9UHD9 16 31 UBQLN2 Ubiquilin-2 yes yes 2 7.4344E-05 76.143 By MS/MS By MS/MS 1 1 0.6238 0.57071 1.4887 2 Median 0.58306 0.56474 NaN 1 1 Median 0.66739 0.57675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3034500 1651200 1383300 1188200 627810 560420 1846300 1023400 822840 0 0 0 0 0 0 0 0 0 0 0 0 11948 4277 12437 60788;60789 61022;61023;61024 61024 3 GPADSLSTAAGAAELSAEGAGK EAAAKEKQPPPPAHRGPADSLSTAAGAAEL TAAGAAELSAEGAGKSRGSGEQDWVNRPKT R G P G K S 7 0 0 1 0 0 2 4 0 0 2 1 0 0 1 3 1 0 0 0 0 0 22 0 1929.928 Q7Z5L9 Q7Z5L9 268 289 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 2 0.041434 24.415 By MS/MS 1 0.41148 0.39354 NaN 1 Median 0.41148 0.39354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5261300 3788100 1473200 5261300 3788100 1473200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11949 3250 12438 60790 61025 61025 1 GPAEESSSWR EDRFRRPRDEGGWRRGPAEESSSWRDSSRR GGWRRGPAEESSSWRDSSRRDDRDRDDRRR R G P W R D 1 1 0 0 0 0 2 1 0 0 0 0 0 0 1 3 0 1 0 0 0 0 10 0 1104.4836 Q14152 Q14152 1251 1260 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0020294 78.334 By MS/MS 1 0.59143 0.49878 NaN 1 Median NaN NaN NaN 0 0 Median 0.59143 0.49878 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2231800 1433200 798550 0 0 0 2231800 1433200 798550 0 0 0 0 0 0 0 0 0 0 0 0 11950 2860 12439 60791 61026 61026 1 GPAEGEEAEPADR PQAAREHRKVGKEWRGPAEGEEAEPADRSQ WRGPAEGEEAEPADRSQESSTLEGGPSARR R G P D R S 3 1 0 1 0 0 4 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 13 0 1326.5688 Q9BZL4;K7EL81 Q9BZL4 634 646 PPP1R12C Protein phosphatase 1 regulatory subunit 12C yes no 2 0.00020224 81.338 By MS/MS By MS/MS 1 1 0.67093 0.63902 14.184 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54232 0.57804 NaN 1 0 Median 0.83003 0.70644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1492800 954040 538710 0 0 0 0 0 0 998570 677170 321400 494180 276870 217310 0 0 0 0 0 0 11951 1374 12440 60792;60793 61027;61028;61029 61029 3 GPAFNMASPESDFGINLK SEVGFHGAAPDISVKGPAFNMASPESDFGI FNMASPESDFGINLKGPKIKGGADVSGGVS K G P L K G 2 0 2 1 0 0 1 2 0 1 1 1 1 2 2 2 0 0 0 0 0 0 18 0 1893.8931 Q09666 Q09666 5545 5562 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 8.8664E-06 69.451 By MS/MS By MS/MS By matching 1 1 3 0.77322 0.75135 15.392 5 Median 0.7537 0.75135 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77322 0.8267 NaN 1 0 Median 0.78928 0.69941 18.284 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19136000 10041000 9095600 6197700 3054400 3143200 0 0 0 11296000 6138900 5157500 1642100 847230 794850 0 0 0 0 0 0 11952 2749 12441 60794;60795;60796;60797;60798 61030;61031;61032 61030 1439 3 GPAFNMASPESDFGINLKGPK SEVGFHGAAPDISVKGPAFNMASPESDFGI ASPESDFGINLKGPKIKGGADVSGGVSAPD K G P P K I 2 0 2 1 0 0 1 3 0 1 1 2 1 2 3 2 0 0 0 0 0 0 21 1 2176.0623 Q09666 Q09666 5545 5565 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 3.2609E-05 55.763 By MS/MS 1 0.55867 0.60718 NaN 1 Median 0.55867 0.60718 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4715800 3294500 1421300 4715800 3294500 1421300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11953 2749 12442 60799 61033 61033 1 GPAGDATVASEK PVPTEEGNPLLKHYRGPAGDATVASEKESV HYRGPAGDATVASEKESVM___________ R G P E K E 3 0 0 1 0 0 1 2 0 0 0 1 0 0 1 1 1 0 0 1 0 0 12 0 1101.5302 Q15758;M0QXM4 Q15758 526 537 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 8.9505E-06 107.79 By matching By MS/MS 1 6 0.84357 0.77312 25.026 6 Median 0.87846 0.85106 NaN 1 0 Median 0.81006 0.70232 27.26 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15373000 7497700 7874800 1100200 559050 541140 14272000 6938600 7333700 0 0 0 0 0 0 0 0 0 0 0 0 11954 2968 12443 60800;60801;60802;60803;60804;60805;60806 61034;61035;61036;61037 61037 4 GPAGDATVASEKESVM PVPTEEGNPLLKHYRGPAGDATVASEKESV PAGDATVASEKESVM_______________ R G P V M - 3 0 0 1 0 0 2 2 0 0 0 1 1 0 1 2 1 0 0 2 0 0 16 1 1547.7137 Q15758;M0QXM4 Q15758 526 541 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 1.587E-09 107.09 By MS/MS By MS/MS 2 2 0.88387 0.79888 39.845 4 Median 1.145 1.0859 7.8647 2 0 Median 0.6382 0.55684 15.493 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31034000 16341000 14693000 20898000 10348000 10550000 10137000 5993700 4142800 0 0 0 0 0 0 0 0 0 0 0 0 11955 2968 12444 60807;60808;60809;60810 61038;61039;61040;61041;61042 61042 5 GPAGNWGPPGDYPDR PGPPAPKPPLPPPHRGPAGNWGPPGDYPDR GPAGNWGPPGDYPDRGGPPCKPPAPEDEDE R G P D R G 1 1 1 2 0 0 0 4 0 0 0 0 0 0 4 0 0 1 1 0 0 0 15 0 1554.6852 P48634 P48634 418 432 PRRC2A Protein PRRC2A yes yes 2 0.0024263 38.021 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.68028 0.60069 31.314 5 Median 0.36966 0.35691 NaN 1 0 Median 0.61231 0.52731 25.759 2 0 Median 0.71002 0.78718 NaN 1 0 Median 0.68028 0.60069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10627000 6994100 3632700 4073500 2982500 1091100 2280000 1444300 835710 3349000 2192000 1157000 924160 375310 548850 0 0 0 0 0 0 11956 2363 12445 60811;60812;60813;60814;60815 61043;61044 61044 1 GPAHCLLLGER EGSKLVPVARVAEVRGPAHCLLLGERVALN AEVRGPAHCLLLGERVALNTLARCSGIASA R G P E R V 1 1 0 0 1 0 1 2 1 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1221.6288 Q15274;C9JCJ5 Q15274 92 102 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes no 3 0.03909 29.936 By MS/MS 1 3.0158 2.5499 NaN 1 Median NaN NaN NaN 0 0 Median 3.0158 2.5499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1555300 418940 1136300 0 0 0 1555300 418940 1136300 0 0 0 0 0 0 0 0 0 0 0 0 11957 2936 12446 60816 61045 61045 1 GPAPQDQAGPGGAPR FRIFIIWAISSWFRRGPAPQDQAGPGGAPR GPAPQDQAGPGGAPRVASRNLFPKDTLMNL R G P P R V 3 1 0 1 0 2 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 15 0 1374.664 O96005;K7EQQ1 O96005 76 90 CLPTM1 Cleft lip and palate transmembrane protein 1 yes no 2 1.4784E-07 96.89 By MS/MS 1 0.61338 0.52591 NaN 1 Median NaN NaN NaN 0 0 Median 0.61338 0.52591 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 851560 504860 346700 0 0 0 851560 504860 346700 0 0 0 0 0 0 0 0 0 0 0 0 11958 1805 12447 60817 61046 61046 1 GPASQFYITPSTSLSPR HPAEGTKSKWGMIPRGPASQFYITPSTSLS ASQFYITPSTSLSPRQSGPQWKGPKPAFGQ R G P P R Q 1 1 0 0 0 1 0 1 0 1 1 0 0 1 3 4 2 0 1 0 0 0 17 0 1807.9105 P49750;H0YIQ2 P49750 815 831 YLPM1 YLP motif-containing protein 1 yes no 2 1.9376E-12 123.95 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 0.67567 0.63485 52.236 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73186 0.8003 NaN 1 1 Median 0.406 0.36657 53.294 2 0 Median 0.62379 0.63949 NaN 1 0 Median 1.0494 0.87821 46.919 2 0 Median 24717000 14196000 10521000 0 0 0 0 0 0 9315100 5231800 4083300 477270 345290 131980 13803000 8040100 5763000 1121500 578800 542700 11959 2395 12448 60818;60819;60820;60821;60822;60823 61047;61048;61049;61050;61051 61048 5 GPASTPTYSPAPTQPAPR AIDEADIPPPVAIGKGPASTPTYSPAPTQP STPTYSPAPTQPAPRIASAPEPRVTLEGPS K G P P R I 3 1 0 0 0 1 0 1 0 0 0 0 0 0 6 2 3 0 1 0 0 0 18 0 1794.8901 Q6P1N0;K7EJY5 Q6P1N0 200 217 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 2 8.4799E-06 57.175 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.39273 0.62583 31.707 4 Linear 0.31752 0.31249 NaN 1 1 Median 0.41357 0.35345 NaN 1 0 Median 0.559 0.63356 NaN 1 0 Median 0.37294 0.35526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19328000 13169000 6158900 2302800 2045100 257710 2901300 1925500 975760 10749000 6946600 3802700 3374800 2252000 1122800 0 0 0 0 0 0 11960 3153 12449 60824;60825;60826;60827 61052;61053 61053 2 GPASVPSVGK KPPVRNPQNSTVLARGPASVPSVGKAVATA TVLARGPASVPSVGKAVATAAQAQTGPEED R G P G K A 1 0 0 0 0 0 0 2 0 0 0 1 0 0 2 2 0 0 0 2 0 0 10 0 897.49198 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 843 852 TCOF1 Treacle protein no no 2 0.014782 38.776 By MS/MS By MS/MS 1 1 0.94567 0.95097 24.213 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71894 0.80133 NaN 1 0 Median 1.2439 1.1286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3880400 1983000 1897400 0 0 0 0 0 0 3235600 1695900 1539700 644830 287120 357710 0 0 0 0 0 0 11961 2816;891 12450 60828;60829 61054;61055 61054 2 GPATVEDLPSAFEEK PQLGTGRGTLRLRSRGPATVEDLPSAFEEK GPATVEDLPSAFEEKAIEKVDDLLESYMGI R G P E K A 2 0 0 1 0 0 3 1 0 0 1 1 0 1 2 1 1 0 0 1 0 0 15 0 1588.7621 O14908;K7EM11 O14908 249 263 GIPC1 PDZ domain-containing protein GIPC1 yes no 2 2.7277E-10 109.24 By MS/MS By matching 3 1 0.56989 0.55876 6.388 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55978 0.55956 2.2806 3 2 Plateau 0.73856 0.62316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23418000 14503000 8914400 0 0 0 0 0 0 22139000 13832000 8306600 1278900 671120 607760 0 0 0 0 0 0 11962 1502 12451 60830;60831;60832;60833 61056;61057;61058;61059 61057 4 GPAVGIDLGTTYSCVGVFQHGK ______________________________ LGTTYSCVGVFQHGKVEIIANDQGNRTTPS K G P G K V 1 0 0 1 1 1 0 5 1 1 1 1 0 1 1 1 2 0 1 3 0 0 22 0 2262.1103 P11142;E9PKE3;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 4 25 HSPA8 Heat shock cognate 71 kDa protein yes no 3 2.7081E-12 66.325 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.87485 0.83226 8.1729 4 Median 0.98648 0.92679 NaN 1 0 Median 1.024 0.85734 NaN 1 0 Median 0.77585 0.80792 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74882 0.76612 NaN 1 0 Median NaN NaN NaN 0 0 Median 39514000 20414000 19101000 11386000 5827700 5558100 12397000 6136800 6260700 6230100 3492300 2737800 0 0 0 9501100 4956800 4544300 0 0 0 11963 1950 12452 60834;60835;60836;60837 61060;61061;61062;61063;61064;61065 61064 6 GPAWVGSHGVLQHTQGLPADR PSEQCYQAPGGPEDRGPAWVGSHGVLQHTQ SHGVLQHTQGLPADRGGLRPGSLDAEIDLL R G P D R G 2 1 0 1 0 2 0 4 2 0 2 0 0 0 2 1 1 1 0 2 0 0 21 0 2182.1032 Q15654 Q15654 65 85 TRIP6 Thyroid receptor-interacting protein 6 yes yes 3 6.7334E-12 67.43 By MS/MS 1 0.73941 0.7363 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73941 0.7363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6917300 3613200 3304000 0 0 0 0 0 0 6917300 3613200 3304000 0 0 0 0 0 0 0 0 0 11964 2962 12453 60838 61066 61066 1 GPAYGLSR ______________________________ ______________________________ R G P S R E 1 1 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 819.4239 P37802;X6RJP6 P37802 5 12 TAGLN2 Transgelin-2 yes no 2 0.0024463 120.52 By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 0.9956 0.89856 20.341 7 Median 0.97803 0.94213 26.028 4 1 Median 1.0838 0.89856 NaN 1 0 Median 0.90148 0.86591 NaN 1 0 Median 1.0618 0.84678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64903000 32725000 32178000 37211000 19262000 17948000 8336800 3796300 4540500 19029000 9499200 9529500 326710 167050 159650 0 0 0 0 0 0 11965 2269 12454 60839;60840;60841;60842;60843;60844;60845;60846 61067;61068;61069;61070;61071;61072;61073;61074;61075;61076 61068 10 GPDALTLLEYTETR TVLEAGTQAPEGVARGPDALTLLEYTETRN RGPDALTLLEYTETRNQFLDELMELEIFLA R G P T R N 1 1 0 1 0 0 2 1 0 0 3 0 0 0 1 0 3 0 1 0 0 0 14 0 1577.7937 Q96JB5;J3QRM1 Q96JB5 337 350 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 2 0.00062212 65.5 By MS/MS By matching By MS/MS 1 2 1 0.91022 0.87797 79.83 4 Median 0.69543 0.6846 NaN 1 0 Median 2.0138 2.0267 87.609 2 0 Median 0.67979 0.70665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11830000 4786400 7043400 3719800 2237800 1482000 4242900 609190 3633800 3867100 1939400 1927600 0 0 0 0 0 0 0 0 0 11966 3684 12455 60847;60848;60849;60850 61077;61078 61078 2 GPDFTPAFADFGR PKLPMRTLDPRILPRGPDFTPAFADFGRQT PRGPDFTPAFADFGRQTPGGRGVPLLNVGS R G P G R Q 2 1 0 2 0 0 0 2 0 0 0 0 0 3 2 0 1 0 0 0 0 0 13 0 1396.6412 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 863 875 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.00017212 82.417 By MS/MS By matching By matching 1 2 1 0.73512 0.67053 18.308 4 Median 0.69364 0.66274 NaN 1 0 Median 0.73512 0.64745 6.6059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1032 0.93287 NaN 1 0 Median 5874700 3212300 2662400 4994000 2719300 2274700 808440 444510 363920 0 0 0 0 0 0 0 0 0 72252 48456 23796 11967 300 12456 60851;60852;60853;60854 61079;61080 61079 2 GPDGLTAFEATDNQAIK EVKDYVAKGADKTVKGPDGLTAFEATDNQA DGLTAFEATDNQAIKALLQ___________ K G P I K A 3 0 1 2 0 1 1 2 0 1 1 1 0 1 1 0 2 0 0 0 0 0 17 0 1746.8424 C9JL85;P58546 C9JL85 32 48 MTPN Myotrophin yes no 2 1.821E-13 116.24 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 0.91381 0.81672 17.476 6 Median 0.79494 0.72242 NaN 1 0 Median 0.98993 0.82259 4.5323 2 0 Median 0.87977 0.83729 NaN 1 0 Median 1.3809 1.1511 NaN 1 0 Median 0.66378 0.71028 NaN 1 0 Median NaN NaN NaN 0 0 Median 55550000 29503000 26047000 13943000 7870500 6072800 16213000 7660500 8553000 24133000 13253000 10880000 262930 90079 172850 996990 628750 368240 0 0 0 11968 706 12457 60855;60856;60857;60858;60859;60860 61081;61082;61083;61084;61085 61084 5 GPDNSMGFGAER DDASAPRLMVLRQPRGPDNSMGFGAERKIR QPRGPDNSMGFGAERKIRQAGVID______ R G P E R K 1 1 1 1 0 0 1 3 0 0 0 0 1 1 1 1 0 0 0 0 0 0 12 0 1236.5193 O75534;E9PLT0 O75534 778 789 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.00024881 99.973 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.94551 0.90117 11.356 4 Median 1.032 0.98983 NaN 1 1 Median 0.94679 0.82045 NaN 1 1 Median 0.93557 0.99898 NaN 1 0 Median 0.94422 0.81355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11846000 6043400 5802700 4736600 2309200 2427500 3151000 1602800 1548200 2081300 1066500 1014800 1877200 1064900 812320 0 0 0 0 0 0 11969 1684 12458 60861;60862;60863;60864 61086;61087;61088 61087 3 GPDWILGEIK LSRGDWYKTKEILLKGPDWILGEIKTSGLR EILLKGPDWILGEIKTSGLRGRGGAGFPTG K G P I K T 0 0 0 1 0 0 1 2 0 2 1 1 0 0 1 0 0 1 0 0 0 0 10 0 1126.6023 G3V0I5;P49821;E9PPS5;E9PQP1;E9PMX3;E9PPR0 G3V0I5 65 74 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 2 0.0013065 66.692 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 0.78376 0.72319 31.563 6 Median 0.6442 0.60616 NaN 1 0 Median 1.4903 1.2631 NaN 1 0 Median 0.66951 0.65246 NaN 1 0 Median 0.91752 0.8185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75806 0.63875 32.113 2 0 Median 27698000 13810000 13888000 5870600 3624300 2246200 11608000 4750800 6857500 7679900 4298100 3381800 807770 417750 390010 0 0 0 1731300 719140 1012200 11970 1100 12459 60865;60866;60867;60868;60869;60870 61089;61090;61091;61092;61093 61091 5 GPELLNMYVGESER KAVANESGLNFISVKGPELLNMYVGESERA KGPELLNMYVGESERAVRQVFQRAKNSAPC K G P E R A 0 1 1 0 0 0 3 2 0 0 2 0 1 0 1 1 0 0 1 1 0 0 14 0 1592.7505 O15381 O15381 648 661 NVL Nuclear valosin-containing protein-like yes yes 2 0.00016414 79.693 By MS/MS By matching 1 1 0.90795 0.85973 1.1248 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80635 0.85292 NaN 1 0 Median 1.0223 0.86659 NaN 1 0 Median 3238200 1921000 1317200 0 0 0 0 0 0 0 0 0 0 0 0 3094000 1839500 1254500 144270 81565 62709 11971 1542 12460 60871;60872 61094 61094 1 GPELLTMWFGESEANVR KAIANECQANFISIKGPELLTMWFGESEAN ELLTMWFGESEANVREIFDKARQAAPCVLF K G P V R E 1 1 1 0 0 0 3 2 0 0 2 0 1 1 1 1 1 1 0 1 0 0 17 0 1934.9196 P55072 P55072 544 560 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.00073373 43.084 By MS/MS By matching By matching 2 1 1 0.9473 0.95037 12.579 4 Median 0.9473 0.90444 4.2665 2 0 Median 1.3038 1.1741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9083 0.96896 NaN 1 0 Median NaN NaN NaN 0 0 Median 23810000 11898000 11912000 22563000 11228000 11336000 132990 51051 81939 0 0 0 0 0 0 1113900 619600 494300 0 0 0 11972 2494 12461 60873;60874;60875;60876 61095;61096;61097;61098 61098 1176 4 GPEQTSGQTAKDPSVSIR GRGLEGNANSPAHLRGPEQTSGQTAKDPSV QTSGQTAKDPSVSIRYLAAVNTGAIKADDM R G P I R Y 1 1 0 1 0 2 1 2 0 1 0 1 0 0 2 3 2 0 0 1 0 0 18 1 1856.9228 Q8NFC6 Q8NFC6 2507 2524 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 0.026658 15.592 By MS/MS 2 0.6045 0.70819 0.61336 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6045 0.70819 0.61336 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3444300 2014000 1430200 0 0 0 0 0 0 3444300 2014000 1430200 0 0 0 0 0 0 0 0 0 11973 3434 12462 60877;60878 61099 61099 1 GPEVDLK GDVDVTGPKVEGDLKGPEVDLKGPKVDIDV PKVEGDLKGPEVDLKGPKVDIDVPDVNVQG K G P L K G 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 7 0 756.40177 Q09666 Q09666 2866 2872 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 1 0.0073495 58.981 By matching By MS/MS 1 1 1.0699 1.0405 19.653 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1841 1.1956 NaN 1 0 Median 0.96671 0.90551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1359100 631900 727200 0 0 0 0 0 0 544000 229380 314620 815110 402520 412580 0 0 0 0 0 0 11974 2749 12463 60879;60880 61100;61101 61101 2 GPEVDLKGPK GDVDVTGPKVEGDLKGPEVDLKGPKVDIDV EGDLKGPEVDLKGPKVDIDVPDVNVQGPDW K G P P K V 0 0 0 1 0 0 1 2 0 0 1 2 0 0 2 0 0 0 0 1 0 0 10 1 1038.571 Q09666 Q09666 2866 2875 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.016546 70.919 By MS/MS By MS/MS 1 1 0.81843 0.90688 41.705 2 Median 0.62513 0.67527 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0715 1.2179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2212000 900690 1311300 1161100 600500 560650 0 0 0 1050800 300190 750640 0 0 0 0 0 0 0 0 0 11975 2749 12464 60881;60882 61102;61103 61103 1 GPEVDVSGPK PKLEGDIKAPSLDIKGPEVDVSGPKLNIEG SLDIKGPEVDVSGPKLNIEGKSKKSRFKLP K G P P K L 0 0 0 1 0 0 1 2 0 0 0 1 0 0 2 1 0 0 0 2 0 0 10 0 983.49238 Q09666 Q09666 3331 3340 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0078415 66.27 By MS/MS 2 0.80563 0.75741 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80563 0.75741 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 911150 528850 382300 0 0 0 0 0 0 0 0 0 911150 528850 382300 0 0 0 0 0 0 11976 2749 12465 60883;60884 61104;61105 61105 2 GPFADENFK DFVNGDGTGVASIYRGPFADENFKLRHSAP VASIYRGPFADENFKLRHSAPGLLSMANSG R G P F K L 1 0 1 1 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 9 0 1023.4662 C9JQD4;O43447;H0YEL5 C9JQD4 67 75 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 2 0.00045891 124.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 0.99424 0.87622 12.764 6 Median 1.0659 1.0038 NaN 1 0 Median 1.1044 0.94511 NaN 1 0 Median 0.82291 0.79524 9.9515 2 0 Median 1.0866 0.89985 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92744 0.7354 NaN 1 0 Median 83417000 41038000 42379000 22608000 11222000 11386000 11656000 5380200 6275900 45610000 22745000 22864000 2596700 1202900 1393900 0 0 0 946410 487640 458770 11977 717 12466 60885;60886;60887;60888;60889;60890 61106;61107;61108;61109;61110;61111;61112;61113;61114 61109 9 GPFADENFKLR DFVNGDGTGVASIYRGPFADENFKLRHSAP SIYRGPFADENFKLRHSAPGLLSMANSGPS R G P L R H 1 1 1 1 0 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 11 1 1292.6513 C9JQD4;O43447;H0YEL5 C9JQD4 67 77 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 3 3.8648E-05 136.63 By MS/MS By MS/MS By matching 1 1 1 0.95736 1.0097 11.007 3 Plateau 1.0567 1.0428 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85657 0.88195 NaN 1 0 Median 0.95736 0.84746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14305000 6099700 8205400 11419000 4735500 6684000 0 0 0 2581400 1231400 1350000 304120 132730 171390 0 0 0 0 0 0 11978 717 12467 60891;60892;60893 61115;61116;61117 61116 3 GPFLLGIK GKEYGAGSSRDWAAKGPFLLGIKAVLAESY SRDWAAKGPFLLGIKAVLAESYERIHRSNL K G P I K A 0 0 0 0 0 0 0 2 0 1 2 1 0 1 1 0 0 0 0 0 0 0 8 0 843.52182 P21399 P21399 786 793 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.008475 62.714 By MS/MS By matching 2 1 1.0398 1.0356 16.783 3 Median 0.93088 0.93095 15.068 2 0 Median 1.2902 1.1654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2811100 1283400 1527700 2390500 1100200 1290300 420670 183230 237440 0 0 0 0 0 0 0 0 0 0 0 0 11979 2090 12468 60894;60895;60896 61118;61119 61119 2 GPFLVALGK GKRTPMCAHCNQVIRGPFLVALGKSWHPEE CNQVIRGPFLVALGKSWHPEEFNCAHCKNT R G P G K S 1 0 0 0 0 0 0 2 0 0 2 1 0 1 1 0 0 0 0 1 0 0 9 0 900.54329 Q96HC4;H0Y8Y3;A0A0A0MSP3 Q96HC4 429 437 PDLIM5 PDZ and LIM domain protein 5 yes no 2 0.019166 40.103 By MS/MS By matching By matching By matching 3 4 1 1 0.98976 0.88185 24.24 9 Median 0.97668 0.94994 12.356 3 0 Median 1.0079 0.85962 29.869 4 0 Median 1.2967 1.3795 NaN 1 0 Median 0.99364 0.83187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16073000 7766700 8306400 7704300 3895400 3808900 6510100 3099800 3410300 1729300 713180 1016100 129450 58432 71022 0 0 0 0 0 0 11980 3665 12469 60897;60898;60899;60900;60901;60902;60903;60904;60905 61120;61121 61120 2 GPFLVSAPLSTIINWER TAVFLYSLYKEGHSKGPFLVSAPLSTIINW FLVSAPLSTIINWEREFEMWAPDMYVVTYV K G P E R E 1 1 1 0 0 0 1 1 0 2 2 0 0 1 2 2 1 1 0 1 0 0 17 0 1899.0254 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q12873 Q14839 776 792 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.00044406 43.084 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.73716 0.80315 4.8377 5 Median NaN NaN NaN 0 0 Median 0.90677 0.78688 NaN 1 0 Median 0.73257 0.80483 0.29687 2 0 Median 1.0128 0.87895 NaN 1 0 Median 0.72886 0.77674 NaN 1 0 Median NaN NaN NaN 0 0 Median 8891700 5045900 3845900 0 0 0 181840 86509 95333 6960800 3936800 3024000 103440 50840 52603 1645600 971710 673890 0 0 0 11981 246;2766 12470 60906;60907;60908;60909;60910 61122;61123;61124;61125;61126;61127 61126 6 GPFSEISAFK TAYKFRVAGINACGRGPFSEISAFKTCLPG NACGRGPFSEISAFKTCLPGFPGAPCAIKI R G P F K T 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 2 0 0 0 0 0 0 10 0 1081.5444 A6NEM2;P51610;H7C1C4 A6NEM2 1920 1929 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.0028032 58.981 By matching By MS/MS By matching By matching 1 3 2 1 0.95411 0.89484 8.383 7 Median NaN NaN NaN 0 0 Median 0.98028 0.89484 NaN 1 0 Median 0.8166 0.90028 13.786 3 0 Median 1.0059 0.88411 3.9152 2 0 Median NaN NaN NaN 0 0 Median 0.97669 0.85715 NaN 1 0 Median 15607000 7844200 7763000 0 0 0 222100 127240 94866 14851000 7459400 7391600 460170 217070 243100 0 0 0 73957 40455 33501 11982 509;2438 12471 60911;60912;60913;60914;60915;60916;60917 61128;61129;61130;61131;61132 61130 5 GPFTDVVTTNLK EQVLSLEPQHELKFRGPFTDVVTTNLKLGN KFRGPFTDVVTTNLKLGNPTDRNVCFKVKT R G P L K L 0 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 3 0 0 2 0 0 12 0 1290.682 Q9P0L0;O95292;E5RK64 O95292 20 31 VAPA;VAPB Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C no no 2 4.7903E-06 138.08 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 1 1 2 0.9178 0.87737 10.834 11 Median 0.89885 0.81588 16.808 3 0 Median 1.1374 0.95536 4.4552 2 0 Median 0.89976 0.85223 4.255 2 0 Median 1.1316 0.93354 NaN 1 0 Median 0.86114 0.87737 NaN 1 0 Median 0.92145 0.77331 6.2939 2 0 Median 107560000 55919000 51644000 60140000 31157000 28984000 8719000 4143200 4575800 23669000 12495000 11174000 738020 352020 386000 11198000 6107100 5090900 3099200 1665400 1433700 11983 4205;1760 12472 60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928 61133;61134;61135;61136;61137;61138;61139;61140;61141;61142;61143;61144;61145;61146;61147;61148;61149;61150 61143 18 GPFVEAEVPDVDLECPDAK PELEGDLRGPQVDVKGPFVEAEVPDVDLEC EAEVPDVDLECPDAKLKGPKFKMPEMHFKA K G P A K L 2 0 0 3 1 0 3 1 0 0 1 1 0 1 3 0 0 0 0 3 0 0 19 0 2085.9565 Q09666 Q09666 1819 1837 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00014737 41.052 By matching By MS/MS 1 1 0.89454 0.87653 3.6543 2 Median NaN NaN NaN 0 0 Median 1.021 0.89948 NaN 1 0 Median 0.78377 0.85417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3423700 1931400 1492400 0 0 0 851650 408830 442820 2572100 1522600 1049500 0 0 0 0 0 0 0 0 0 11984 2749 12473 60929;60930 61151;61152 61151 2 GPFVTWQVVR VLCRIASNVLNTKVKGPFVTWQVVRDILHA NTKVKGPFVTWQVVRDILHATFEESLDKTS K G P V R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 3 0 0 10 0 1187.6451 Q12789;H3BRD0 Q12789 1289 1298 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0010001 69.423 By matching By MS/MS 1 2 0.76156 0.83001 11.705 3 Median NaN NaN NaN 0 0 Median 1.0966 0.97467 NaN 1 0 Median 0.7426 0.80261 4.7469 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14527000 7855800 6671200 0 0 0 266480 116210 150270 14261000 7739600 6521000 0 0 0 0 0 0 0 0 0 11985 2758 12474 60931;60932;60933 61153;61154 61154 2 GPGAPGLAHLQESQAGSDTDVEEGK IPMKKRKIFHGVGTRGPGAPGLAHLQESQA QESQAGSDTDVEEGKAPQAVPLEKSQASMV R G P G K A 3 0 0 2 0 2 3 5 1 0 2 1 0 0 2 2 1 0 0 1 0 0 25 0 2449.1357 Q14676 Q14676 360 384 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.01257 15.68 By matching By MS/MS 1 1 0.66425 0.66809 22.23 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51221 0.57091 NaN 1 0 Median 0.86141 0.78181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4788800 2587800 2201000 0 0 0 0 0 0 3191500 1771200 1420300 1597400 816690 780660 0 0 0 0 0 0 11986 2887 12475 60934;60935 61155 61155 1 GPGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEK IPMKKRKIFHGVGTRGPGAPGLAHLQESQA DVEEGKAPQAVPLEKSQASMVINSDTDDEE R G P E K S 5 0 0 2 0 3 4 5 1 0 3 2 0 0 4 2 1 0 0 2 0 0 34 1 3382.6641 Q14676 Q14676 360 393 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 4 3.0812E-05 38.988 By MS/MS 1 0.42813 0.49801 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42813 0.49801 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46870000 37558000 9312300 0 0 0 0 0 0 46870000 37558000 9312300 0 0 0 0 0 0 0 0 0 11987 2887 12476 60936 61156 61156 1 GPGASGEQPEPGEAAAGGAAEEAR LPPPLPPPSPPGSGRGPGASGEQPEPGEAA EPGEAAAGGAAEEARRLEQRWGFGLEELYG R G P A R R 7 1 0 0 0 1 5 6 0 0 0 0 0 0 3 1 0 0 0 0 0 0 24 0 2164.9621 Q9H3P7 Q9H3P7 50 73 ACBD3 Golgi resident protein GCP60 yes yes 2;3 1.3455E-20 97.417 By MS/MS By MS/MS 2 2 0.66471 0.60233 16.346 4 Median 0.58601 0.55764 5.4366 2 0 Median 0.80859 0.70045 15.878 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34314000 19900000 14414000 24690000 14144000 10546000 9624100 5756000 3868100 0 0 0 0 0 0 0 0 0 0 0 0 11988 3957 12477 60937;60938;60939;60940 61157;61158;61159;61160;61161;61162 61160 6 GPGDLEAPSNLVISERTHR RIVDDLTINLCNSVKGPGDLEAPSNLVISE LEAPSNLVISERTHRSFRVSWTPPSDSVDR K G P H R S 1 2 1 1 0 0 2 2 1 1 2 0 0 0 2 2 1 0 0 1 0 0 19 1 2047.0447 A0A087X0A8;D6RGG3;Q99715;H0Y4P7 A0A087X0A8 192 210 COL12A1 Collagen alpha-1(XII) chain yes no 3 0.06793 8.4943 By MS/MS By matching 2 1 1.0434 1.3181 21.177 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0434 1.3181 0 2 0 Median NaN NaN NaN 0 0 Median 0.84434 0.91339 NaN 1 0 Median NaN NaN NaN 0 0 Median 9894300 4203500 5690800 0 0 0 0 0 0 6405300 2525800 3879600 0 0 0 3489000 1677700 1811200 0 0 0 11989 102 12478 60941;60942;60943 61163 61163 1 GPGDSTRPSKPGPVSWK RPLSTARPPPPWSQKGPGDSTRPSKPGPVS GDSTRPSKPGPVSWKSLAITFAIGGALLAG K G P W K S 0 1 0 1 0 0 0 3 0 0 0 2 0 0 4 3 1 1 0 1 0 0 17 2 1751.8955 J3QL56;O75880 J3QL56 80 96 SCO1 Protein SCO1 homolog, mitochondrial yes no 4 0.0014395 30.974 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.67 0.6279 17.123 4 Median 0.53471 0.56935 NaN 1 0 Median 0.91174 0.79051 NaN 1 0 Median 0.4903 0.54895 NaN 1 0 Median 0.83952 0.69248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7284600 4096700 3187900 2856300 1701500 1154800 1693500 865720 827820 1727800 1013200 714550 1007100 516360 490700 0 0 0 0 0 0 11990 1339 12479 60944;60945;60946;60947 61164;61165 61164 2 GPGGSSLLIEALSNSSHK KMEKSKDTYLLYEGRGPGGSSLLIEALSNS GSSLLIEALSNSSHKCQADIRHILNKNGGV R G P H K C 1 0 1 0 0 0 1 3 1 1 3 1 0 0 1 5 0 0 0 0 0 0 18 0 1752.9006 Q9BSH4 Q9BSH4 142 159 TACO1 Translational activator of cytochrome c oxidase 1 yes yes 3 2.0678E-08 92.211 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1264 1.0399 18.591 5 Median 0.99913 0.93784 18.983 2 0 Median 1.2166 1.0399 NaN 1 0 Median 1.0105 0.95121 NaN 1 0 Median 1.6614 1.3626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42546000 22512000 20033000 35042000 18552000 16491000 773870 402350 371530 6383800 3415200 2968600 345440 142940 202500 0 0 0 0 0 0 11991 3813 12480 60948;60949;60950;60951;60952 61166;61167;61168;61169;61170 61168 5 GPGLASGQLYSYPAR VAQSNCYIWMEKRHRGPGLASGQLYSYPAR GPGLASGQLYSYPARRWRKKRRAHPPEDPR R G P A R R 2 1 0 0 0 1 0 3 0 0 2 0 0 0 2 2 0 0 2 0 0 0 15 0 1535.7732 Q92785;J3KMZ8;E9PN04 Q92785 63 77 DPF2 Zinc finger protein ubi-d4 yes no 2 4.243E-19 181.68 By MS/MS By MS/MS By matching 2 1 1 0.83884 0.77065 45.902 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66334 0.68301 2.681 2 1 Median 0.98794 0.8532 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2878 1.797 NaN 1 0 Median 39743000 22546000 17197000 0 0 0 0 0 0 32140000 18934000 13206000 7157500 3473500 3684000 0 0 0 445530 138150 307380 11992 1299 12481 60953;60954;60955;60956 61171;61172;61173;61174;61175;61176;61177;61178;61179 61175 9 GPGLAVQSGDK GKRINVELSTKGQKKGPGLAVQSGDKTKKP GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG K G P D K T 1 0 0 1 0 1 0 3 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1027.5298 Q96PK6 Q96PK6 154 164 RBM14 RNA-binding protein 14 yes yes 2 0.034503 47.198 By MS/MS 1 0.31946 0.34043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31946 0.34043 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1507600 975900 531670 0 0 0 0 0 0 1507600 975900 531670 0 0 0 0 0 0 0 0 0 11993 3712 12482 60957 61180 61180 1 GPGLGSTQGQTIALPAQGLIEFR NQRGRFLRIRQTVNRGPGLGSTQGQTIALP GQTIALPAQGLIEFRDALAKLIDDYGVEEE R G P F R D 2 1 0 0 0 3 1 5 0 2 3 0 0 1 2 1 2 0 0 0 0 0 23 0 2310.2332 Q00577 Q00577 177 199 PURA Transcriptional activator protein Pur-alpha yes yes 2;3 1.507E-11 51.029 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 0.84628 0.85878 63.605 7 Median 0.70156 0.69838 0.59297 2 0 Median 0.84628 0.74247 NaN 1 0 Median 0.79672 0.85879 NaN 1 0 Median 1.0059 0.85878 NaN 1 0 Median 0.86556 0.92631 NaN 1 0 Median 4.6989 4.1552 NaN 1 0 Median 11439000 6656200 4782500 7322700 4475700 2847000 645870 360660 285220 1714500 871700 842850 53346 25392 27953 1622300 906750 715510 80015 15974 64041 11994 2676 12483 60958;60959;60960;60961;60962;60963;60964 61181;61182;61183;61184;61185;61186;61187 61184 7 GPGLSQAFVGQK SIPKFSSDASKVVTRGPGLSQAFVGQKNSF VTRGPGLSQAFVGQKNSFTVDCSKAGTNMM R G P Q K N 1 0 0 0 0 2 0 3 0 0 1 1 0 1 1 1 0 0 0 1 0 0 12 0 1187.6299 Q14315 Q14315 2642 2653 FLNC Filamin-C yes yes 2 8.3703E-07 164.96 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 1 3 1 1.057 1.0413 27.89 11 Median 1.0426 1.0458 16.234 3 0 Median 0.96817 0.85925 1.5166 3 1 Median 1.5486 1.7243 NaN 1 0 Median 1.2834 1.2487 28.696 3 0 Median NaN NaN NaN 0 0 Median 1.057 0.90597 NaN 1 0 Median 91385000 43590000 47796000 28385000 13237000 15149000 50849000 25264000 25585000 5769200 2306400 3462800 5130100 2171300 2958900 0 0 0 1252100 611640 640490 11995 2871 12484 60965;60966;60967;60968;60969;60970;60971;60972;60973;60974;60975 61188;61189;61190;61191;61192;61193;61194;61195;61196;61197;61198 61194 11 GPGLYYVDSEGNR MGLSMGTMICGWDKRGPGLYYVDSEGNRIS KRGPGLYYVDSEGNRISGATFSVGSGSVYA R G P N R I 0 1 1 1 0 0 1 3 0 0 1 0 0 0 1 1 0 0 2 1 0 0 13 0 1425.6525 P28074 P28074 167 179 PSMB5 Proteasome subunit beta type-5 yes yes 2 2.5454E-15 186.78 By MS/MS By MS/MS By MS/MS 2 3 1 0.89355 0.84185 26.874 6 Median 0.61967 0.60562 46.543 2 0 Median 1.0158 0.84205 10.993 3 0 Plateau 0.9026 0.86681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92182000 46472000 45710000 65598000 33069000 32530000 19502000 9706200 9795900 7081900 3697200 3384700 0 0 0 0 0 0 0 0 0 11996 2162 12485 60976;60977;60978;60979;60980;60981 61199;61200;61201;61202;61203;61204;61205 61200 7 GPGNLNRPIFSK QQREAPKSVLDSTLKGPGNLNRPIFSKCCF TLKGPGNLNRPIFSKCCFEVLTSSWRASPW K G P S K C 0 1 2 0 0 0 0 2 0 1 1 1 0 1 2 1 0 0 0 0 0 0 12 1 1298.7095 Q9NU22 Q9NU22 3057 3068 MDN1 Midasin yes yes 2;3 2.2831E-05 101.97 By MS/MS By MS/MS By MS/MS 1 2 1 0.90706 0.98498 11.58 4 Median NaN NaN NaN 0 0 Median 1.0207 0.94636 NaN 1 0 Median 0.75672 0.9378 18.606 2 0 Median 1.1006 1.0252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33517000 17891000 15625000 0 0 0 10057000 4454600 5602300 20586000 12106000 8479600 2873800 1330300 1543500 0 0 0 0 0 0 11997 4112 12486 60982;60983;60984;60985 61206;61207;61208 61206 3 GPGNPVPGPLAPLPDYMSEEK ______________________________ PGPLAPLPDYMSEEKLQEKARKWQQLQAKR R G P E K L 1 0 1 1 0 0 2 3 0 0 2 1 1 0 6 1 0 0 1 1 0 0 21 0 2164.0511 Q6P2Q9;I3L0J9 Q6P2Q9 9 29 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 1.4593E-08 57.159 By matching By MS/MS By matching 1 1 1 0.48109 0.43508 42.889 3 Median NaN NaN NaN 0 0 Median 0.96289 0.83671 NaN 1 0 Median 0.33472 0.37307 NaN 1 0 Median 0.48109 0.43508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4587700 3172100 1415500 0 0 0 426310 144730 281590 3641200 2673200 967970 520190 354200 165990 0 0 0 0 0 0 11998 3157 12487 60986;60987;60988 61209 61209 1 GPGNPVPGPLAPLPDYMSEEKLQEK ______________________________ APLPDYMSEEKLQEKARKWQQLQAKRYAEK R G P E K A 1 0 1 1 0 1 3 3 0 0 3 2 1 0 6 1 0 0 1 1 0 0 25 1 2662.3313 Q6P2Q9;I3L0J9 Q6P2Q9 9 33 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 6.7362E-13 58.418 By matching By MS/MS By matching 1 1 1 0.48569 0.45173 19.383 3 Median 0.52981 0.58007 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34131 0.39606 NaN 1 0 Median 0.48569 0.45173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29997000 23102000 6895700 6407300 4869100 1538200 0 0 0 23265000 18017000 5247400 325230 215140 110090 0 0 0 0 0 0 11999 3157 12488 60989;60990;60991 61210;61211;61212 61210 3 GPGPLQER HNYHKFDSEYERMGRGPGPLQERSLFEKKR EYERMGRGPGPLQERSLFEKKRGAPPSSNI R G P E R S 0 1 0 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 0 852.44537 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 256 263 MATR3 Matrin-3 yes no 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS 1 1 1 0.78624 0.74932 5.8757 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67773 0.72405 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78624 0.81188 NaN 1 0 Median 0.9202 0.74932 NaN 1 0 Median 10724000 6021000 4702900 0 0 0 0 0 0 2005600 1229400 776120 0 0 0 7030900 3983300 3047600 1687500 808250 879210 12000 297 12489 60992;60993;60994 61213;61214;61215;61216;61217;61218;61219;61220;61221;61222;61223;61224 61218 12 GPGTSAEFSEFPLVNVNDNR IATQFSTANGQVNLRGPGTSAEFSEFPLVN AEFSEFPLVNVNDNRAGMTSSPDATTGQTF R G P N R A 1 1 3 1 0 0 2 2 0 0 1 0 0 2 2 2 1 0 0 2 0 0 20 0 2149.0076 Q9UQR1;G5E9X2 Q9UQR1 759 778 ZNF148 Zinc finger protein 148 yes no 3 0.0091274 21.599 By MS/MS 1 0.74728 0.80178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74728 0.80178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1485700 728810 756900 0 0 0 0 0 0 1485700 728810 756900 0 0 0 0 0 0 0 0 0 12001 4364 12490 60995 61225;61226 61226 2 GPGVDLPSVNLSMPK RGPDVKLEGPDVSLKGPGVDLPSVNLSMPK GPGVDLPSVNLSMPKVSGPDLDLNLKGPSL K G P P K V 0 0 1 1 0 0 0 2 0 0 2 1 1 0 3 2 0 0 0 2 0 0 15 0 1509.7861 Q09666 Q09666 5282 5296 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00032492 51.927 By MS/MS By matching By matching By MS/MS 1 1 1 4 0.6625 0.6047 24.903 6 Median NaN NaN NaN 0 0 Median 0.57836 0.53317 NaN 1 0 Median 0.39928 0.40432 NaN 1 0 Median 0.74225 0.69452 18.141 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27401000 19173000 8228000 0 0 0 1170700 639260 531400 19970000 14937000 5033000 6259900 3596300 2663600 0 0 0 0 0 0 12002 2749 12491;12492 60996;60997;60998;60999;61000;61001;61002 61227;61228;61229;61230 61228 1440 4 GPGVDVNLK LHVNAKGPQVSGELKGPGVDVNLKGPRISA VSGELKGPGVDVNLKGPRISAPNVDFNLEG K G P L K G 0 0 1 1 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 2 0 0 9 0 897.49198 Q09666 Q09666 5435 5443 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0060753 55.676 By MS/MS 1 0.93592 0.9093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93592 0.9093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3381700 1665900 1715700 0 0 0 0 0 0 0 0 0 3381700 1665900 1715700 0 0 0 0 0 0 12003 2749 12493 61003 61231 61231 1 GPHGVWTMEER TGAGISTASGIPDFRGPHGVWTMEERGLAP PDFRGPHGVWTMEERGLAPKFDTTFESARP R G P E R G 0 1 0 0 0 0 2 2 1 0 0 0 1 0 1 0 1 1 0 1 0 0 11 0 1297.5874 Q8N6T7 Q8N6T7 66 76 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes yes 3 0.0063438 33.87 By MS/MS 1 1.036 1.1236 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.036 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3068800 1630300 1438500 0 0 0 0 0 0 3068800 1630300 1438500 0 0 0 0 0 0 0 0 0 12004 3390 12494 61004 61232 61232 1 GPHHLDNSSPGPGSEAR SSRGGRPGLSSLPPRGPHHLDNSSPGPGSE HHLDNSSPGPGSEARGINGGPSRMSPKAQR R G P A R G 1 1 1 1 0 0 1 3 2 0 1 0 0 0 3 3 0 0 0 0 0 0 17 0 1713.7819 Q8WWM7;H3BUF6 Q8WWM7 383 399 ATXN2L Ataxin-2-like protein yes no 3 0.0017703 27.496 By matching By MS/MS By matching 1 1 1 0.53716 0.54097 6.2673 3 Plateau 0.5141 0.51252 NaN 1 0 Median 0.62361 0.54097 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53716 0.47742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1693900 1046100 647770 240380 150560 89819 1309200 796400 512820 0 0 0 144320 99191 45128 0 0 0 0 0 0 12005 3511 12495 61005;61006;61007 61233;61234 61234 2 GPHPPGGLLGHGPQEMR APQGMIMGHPPQEMRGPHPPGGLLGHGPQE HPPGGLLGHGPQEMRGPQEIRGMQGPPPQG R G P M R G 0 1 0 0 0 1 1 5 2 0 2 0 1 0 4 0 0 0 0 0 0 0 17 0 1735.8577 Q9C0J8 Q9C0J8 812 828 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 4.0262E-07 85.988 By MS/MS 1 0.6281 0.69036 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6281 0.69036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29266000 17128000 12139000 0 0 0 0 0 0 29266000 17128000 12139000 0 0 0 0 0 0 0 0 0 12006 3907 12496 61008 61235;61236;61237 61236 3 GPHPSQGPIPFQQQK MQGPPGPQGQQNPARGPHPSQGPIPFQQQK GPHPSQGPIPFQQQKTPLLGDGPRAPFNQE R G P Q K T 0 0 0 0 0 4 0 2 1 1 0 1 0 1 4 1 0 0 0 0 0 0 15 0 1644.8372 Q9C0J8 Q9C0J8 892 906 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2;3 6.6415E-38 147.62 By matching By MS/MS By MS/MS 1 3 1 0.54067 0.63443 7.1963 3 Median 0.53476 0.6644 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54067 0.57694 NaN 1 1 Median 0.70439 0.63443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22956000 14209000 8747100 1355300 851840 503460 0 0 0 15682000 9940500 5741900 5918100 3416400 2501700 0 0 0 0 0 0 12007 3907 12497 61009;61010;61011;61012;61013 61238;61239;61240;61241;61242 61240 5 GPIAAGTSDHFTKPSPR LGLSRSPVVSEQTAKGPIAAGTSDHFTKPS IAAGTSDHFTKPSPRADVFQRQRIPDSYAR K G P P R A 2 1 0 1 0 0 0 2 1 1 0 1 0 1 3 2 2 0 0 0 0 0 17 1 1737.8798 Q8NEZ4 Q8NEZ4 1997 2013 KMT2C Histone-lysine N-methyltransferase 2C yes yes 3;4 6.1864E-06 76.85 By MS/MS By MS/MS 2 3 0.63683 0.62885 50.35 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5399 0.6251 0.84576 2 0 Median 0.69049 0.66659 64.871 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14268000 9204900 5063100 0 0 0 0 0 0 11645000 7792200 3852400 2623400 1412700 1210700 0 0 0 0 0 0 12008 3431 12498 61014;61015;61016;61017;61018 61243;61244;61245;61246;61247;61248;61249 61244 7 GPIAFWAR VSKALMASMARRASRGPIAFWARRASRTRL MARRASRGPIAFWARRASRTRLAAWARRAL R G P A R R 2 1 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 8 0 916.49192 Q9UNF1;Q5H909 Q9UNF1 220 227 MAGED2 Melanoma-associated antigen D2 yes no 2 0.0034154 97.596 By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 1.276 1.2269 58.311 6 Median 0.87235 0.84118 3.1846 2 0 Median NaN NaN NaN 0 0 Median 1.1773 1.2476 NaN 1 0 Median 1.3831 1.2065 NaN 1 0 Median 2.877 2.9775 11.946 2 0 Median NaN NaN NaN 0 0 Median 23003000 11175000 11828000 17167000 8832100 8334800 0 0 0 3248400 1609100 1639200 85928 37571 48357 2501700 696320 1805400 0 0 0 12009 4343 12499 61019;61020;61021;61022;61023;61024 61250;61251;61252;61253;61254;61255 61250 6 GPIKFNVWDTAGQEK TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK GPIKFNVWDTAGQEKFGGLRDGYYIQEMGI R G P E K F 1 0 1 1 0 1 1 2 0 1 0 2 0 1 1 0 1 1 0 1 0 0 15 1 1688.8522 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 57 71 RAN GTP-binding nuclear protein Ran yes no 2;3 1.8102E-85 257.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 2 3 2 3 1.0641 1.0139 16.79 17 Median 1.014 1.0265 19.42 7 0 Median 1.1013 1.0047 1.7035 2 0 Median 1.0641 1.0534 22.389 3 1 Median 1.0933 0.98521 0.7292 2 0 Median 0.92029 0.98914 16.663 3 0 Median NaN NaN NaN 0 0 Median 734490000 354950000 379540000 408080000 196020000 212050000 29068000 13071000 15997000 247150000 119740000 127410000 17227000 7999100 9227500 32970000 18114000 14857000 0 0 0 12010 623 12500 61025;61026;61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038;61039;61040;61041 61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272;61273;61274;61275;61276;61277;61278;61279;61280;61281 61266 26 GPILLPYQFR FHLGKIEELLSGENRGPILLPYQFRMEEIE SGENRGPILLPYQFRMEEIEGFRYRCRDAM R G P F R M 0 1 0 0 0 1 0 1 0 1 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1202.6812 Q9NY93;H7C3E9;H7BZN7 Q9NY93 410 419 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0036443 56.011 By MS/MS 1 0.51677 0.51174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51677 0.51174 NaN 1 0 Median NaN NaN NaN 0 0 Median 3676000 2276400 1399600 0 0 0 0 0 0 0 0 0 0 0 0 3676000 2276400 1399600 0 0 0 12011 4173 12501 61042 61282;61283 61282 2 GPILMELQTYR REATRFAAAYCRSGKGPILMELQTYRYHGH RSGKGPILMELQTYRYHGHSMSDPGVSYRT K G P Y R Y 0 1 0 0 0 1 1 1 0 1 2 0 1 0 1 0 1 0 1 0 0 0 11 0 1319.6908 P08559;P29803 P08559 278 288 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial yes no 2 0.0001236 120.12 By MS/MS By MS/MS 1 2 1.1084 0.96593 11.827 3 Median 0.83853 0.84013 NaN 1 0 Median 1.1776 1.0133 6.7645 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58393000 29437000 28956000 35001000 19099000 15902000 23392000 10338000 13054000 0 0 0 0 0 0 0 0 0 0 0 0 12012 1902 12502 61043;61044;61045 61284;61285;61286;61287;61288;61289;61290;61291 61285 8 GPILSFASTR LELNASDDRGIDIIRGPILSFASTRTIFKK IDIIRGPILSFASTRTIFKKGFKLVILDEA R G P T R T 1 1 0 0 0 0 0 1 0 1 1 0 0 1 1 2 1 0 0 0 0 0 10 0 1047.5713 P40937;F5H5S0;C9JH72;E9PEP3 P40937 103 112 RFC5 Replication factor C subunit 5 yes no 2 0.00033784 90.657 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1.1721 1.0053 12.088 7 Median 0.98841 0.98459 NaN 1 0 Median 1.1721 1.0053 NaN 1 0 Median 1.0176 1.0474 12.759 2 0 Median 1.2351 1.0704 NaN 1 0 Median 1.3182 1.3537 NaN 1 0 Median 1.226 1.0013 NaN 1 0 Median 41722000 19373000 22349000 10468000 5019300 5449100 1207500 558470 649000 16022000 7436400 8586000 2600600 1156800 1443900 7283100 3407600 3875500 4140000 1794700 2345300 12013 2293 12503 61046;61047;61048;61049;61050;61051;61052 61292;61293;61294;61295;61296;61297;61298 61295 7 GPIPSGMQGPSPINMGAVVPQGSR EARGMDTRGPVPGPRGPIPSGMQGPSPINM PSPINMGAVVPQGSRQVPVMQGTGMQGASI R G P S R Q 1 1 1 0 0 2 0 5 0 2 0 0 2 0 5 3 0 0 0 2 0 0 24 0 2333.162 P33240;E7EWR4 P33240 476 499 CSTF2 Cleavage stimulation factor subunit 2 yes no 3 4.8341E-05 32.952 By MS/MS By matching 1 1 0.57645 0.56951 4.5581 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55639 0.58817 NaN 1 0 Median 0.59723 0.55145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3609200 2373400 1235700 0 0 0 0 0 0 3462300 2298300 1164100 146830 75178 71652 0 0 0 0 0 0 12014 2222 12504 61053;61054 61299;61300 61299 2 GPIPSLFSGQHGPPPYGDSR DGPRGPPPARFGAQKGPIPSLFSGQHGPPP LFSGQHGPPPYGDSRGPSPSYLGGPRGVAP K G P S R G 0 1 0 1 0 1 0 4 1 1 1 0 0 1 5 3 0 0 1 0 0 0 20 0 2065.0017 Q9BTC0 Q9BTC0 1805 1824 DIDO1 Death-inducer obliterator 1 yes yes 3 3.5379E-05 56.149 By MS/MS 2 0.44802 0.49045 2.1458 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44802 0.49045 2.1458 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16932000 11553000 5378500 0 0 0 0 0 0 16932000 11553000 5378500 0 0 0 0 0 0 0 0 0 12015 3824 12505 61055;61056 61301;61302;61303 61301 3 GPIQILNR RLKHMVDDKIHSRARGPIQILNRQPMEGRS KIHSRARGPIQILNRQPMEGRSRDGGLRFG R G P N R Q 0 1 1 0 0 1 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 909.5396 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 1058 1065 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0026052 106.76 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 0.89322 0.94529 26.673 5 Median 0.87994 0.87198 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5024 1.6402 NaN 1 0 Median 1.2334 1.0525 NaN 1 0 Median 0.8552 0.90092 6.7991 2 0 Median NaN NaN NaN 0 0 Median 10124000 5158000 4965600 1911300 877310 1034000 0 0 0 1984700 861580 1123100 1002500 499590 502920 5225200 2919500 2305600 0 0 0 12016 671 12506 61057;61058;61059;61060;61061;61062 61304;61305;61306;61307 61305 4 GPISDALAHHLR DVGKTLCPLCFSILKGPISDALAHHLRERH ILKGPISDALAHHLRERHQVIQTVHPVEKK K G P L R E 2 1 0 1 0 0 0 1 2 1 2 0 0 0 1 1 0 0 0 0 0 0 12 0 1285.6891 Q9H2P0;A0A2R8Y6X0 Q9H2P0 633 644 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 3.4685E-05 89.548 By MS/MS By matching By MS/MS By matching 1 1 3 1 0.90139 0.90612 16.253 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72856 0.80121 NaN 1 0 Median 1.1013 0.93857 NaN 1 0 Median 0.86339 0.87479 21.809 3 0 Median 1.1789 0.95955 NaN 1 0 Median 34816000 18473000 16343000 0 0 0 0 0 0 8572500 4440700 4131800 1343200 420800 922410 23887000 13131000 10756000 1012700 479890 532800 12017 3946 12507 61063;61064;61065;61066;61067;61068 61308;61309;61310;61311;61312 61312 5 GPIVESYIGFIESYR IEAHKRGSRFWIQDKGPIVESYIGFIESYR GPIVESYIGFIESYRDPFGSRGEFEGFVAV K G P Y R D 0 1 0 0 0 0 2 2 0 3 0 0 0 1 1 2 0 0 2 1 0 0 15 0 1728.8723 G3V1D3;G3V180;Q9NY33 G3V1D3 324 338 DPP3 Dipeptidyl peptidase 3 yes no 2 0.017518 42.556 By MS/MS 1 1.1643 1.0222 NaN 1 Median NaN NaN NaN 0 0 Median 1.1643 1.0222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1529700 826150 703510 0 0 0 1529700 826150 703510 0 0 0 0 0 0 0 0 0 0 0 0 12018 1102 12508 61069 61313 61313 1 GPIWSSNNCGDRPSDSPGVVTDMFTAINSFGAPLEDWEDK G P D K 2 1 3 5 1 0 2 4 0 2 1 1 1 2 4 5 2 2 0 2 0 0 40 1 4367.9376 REV__H7C2N5 yes no 6 0.066188 0.011219 By MS/MS 1 1.3807 1.5683 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3807 1.5683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3730000 2852300 877690 0 0 0 0 0 0 3730000 2852300 877690 0 0 0 0 0 0 0 0 0 + 12019 4528 12509 61070 61314 61314 1 GPLATGGIK EQKKLEVLKAKVVGKGPLATGGIKKSGKK_ AKVVGKGPLATGGIKKSGKK__________ K G P I K K 1 0 0 0 0 0 0 3 0 1 1 1 0 0 1 0 1 0 0 0 0 0 9 0 812.4756 A0A024R1R8;Q9Y2S6 A0A024R1R8 51 59 hCG_2014768;TMA7 Translation machinery-associated protein 7 yes no 2 0.010073 48.561 By MS/MS By MS/MS 1 2 1.0203 0.95442 20.811 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0203 0.9957 NaN 1 0 Median 0.95973 0.74671 17.724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6367400 3250100 3117300 0 0 0 0 0 0 3596500 1915000 1681500 2771000 1335100 1435800 0 0 0 0 0 0 12020 2 12510 61071;61072;61073 61315;61316;61317 61317 3 GPLATGGIKK EQKKLEVLKAKVVGKGPLATGGIKKSGKK_ KVVGKGPLATGGIKKSGKK___________ K G P K K S 1 0 0 0 0 0 0 3 0 1 1 2 0 0 1 0 1 0 0 0 0 0 10 1 940.57057 A0A024R1R8;Q9Y2S6 A0A024R1R8 51 60 hCG_2014768;TMA7 Translation machinery-associated protein 7 yes no 2 0.0074885 50.607 By MS/MS By MS/MS 1 1 0.93521 0.86644 2.8458 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86387 0.88405 NaN 1 0 Median 1.0124 0.84918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108800 1601600 1507300 0 0 0 0 0 0 2235100 1168500 1066600 873790 433070 440720 0 0 0 0 0 0 12021 2 12511 61074;61075 61318;61319;61320 61320 3 GPLDKWR RLIPDGCGVKYIPSRGPLDKWRALHS____ GVKYIPSRGPLDKWRALHS___________ R G P W R A 0 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 0 0 7 1 870.47119 F8W7C6;A0A087WV22;P27635 F8W7C6 153 159 RPL10 60S ribosomal protein L10 yes no 2 0.011473 126.24 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.92965 0.85938 26.124 5 Median 0.81631 0.85013 NaN 1 0 Median 0.99863 0.9443 13.326 2 0 Median 0.57793 0.60038 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1352 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median 63993000 31218000 32775000 29264000 14346000 14918000 11869000 5977300 5891400 6229900 3482900 2747000 0 0 0 16631000 7411900 9218600 0 0 0 12022 1084 12512 61076;61077;61078;61079;61080 61321;61322 61322 2 GPLDNFLR VGSDIDFRPKLVNGKGPLDNFLRNRIETSI PKLVNGKGPLDNFLRNRIETSIGQSTVIID K G P L R N 0 1 1 1 0 0 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 930.49232 Q13111;K7EJF1 Q13111 96 103 CHAF1A Chromatin assembly factor 1 subunit A yes no 2 0.028842 40.103 By matching By MS/MS 1 2 0.99284 0.99443 8.9918 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99739 0.88886 NaN 1 0 Median 0.94478 0.99443 8.8164 2 0 Median NaN NaN NaN 0 0 Median 2696500 1406800 1289700 0 0 0 0 0 0 0 0 0 83623 39124 44499 2612900 1367700 1245200 0 0 0 12023 2785 12513 61081;61082;61083 61323;61324;61325 61323 3 GPLEPSEPAVVAAAR DQRDLAQDEAVWLERGPLEPSEPAVVAAAR GPLEPSEPAVVAAARVGVGHAGEWARKPLR R G P A R V 4 1 0 0 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 15 0 1462.778 P29372;A2IDA3 P29372 247 261 MPG DNA-3-methyladenine glycosylase yes no 2 7.9454E-14 175.15 By MS/MS By MS/MS By MS/MS 1 3 2 0.59146 0.56006 9.6649 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55098 0.53432 NaN 1 0 Median 0.70319 0.58671 11.996 3 0 Median 0.53728 0.55934 8.2658 2 2 Median NaN NaN NaN 0 0 Median 73877000 45844000 28033000 0 0 0 0 0 0 46624000 28998000 17626000 17044000 9973500 7070900 10209000 6872600 3336000 0 0 0 12024 2170 12514 61084;61085;61086;61087;61088;61089 61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337 61328 12 GPLGPNWK ADEDPALFQSVKTKRGPLGPNWKKELANSP QSVKTKRGPLGPNWKKELANSPDCPQMCAY R G P W K K 0 0 1 0 0 0 0 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 8 0 867.46029 F5GWE5;Q00169;I3L4H1;I3L4C0;I3L459;P48739;A0A0A0MSW4;B3KYB6 P48739 171 178 PITPNA;PITPNB Phosphatidylinositol transfer protein alpha isoform;Phosphatidylinositol transfer protein beta isoform no no 2 0.0074539 66.994 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.99431 0.8704 29.597 4 Median 0.70807 0.64314 NaN 1 0 Median 0.83741 0.70296 NaN 1 0 Median 1.1806 1.155 NaN 1 0 Median 1.2644 1.0777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27116000 15561000 11555000 21560000 12791000 8769600 3660000 1856600 1803400 980370 524340 456030 915660 389820 525840 0 0 0 0 0 0 12025 2368;997 12515 61090;61091;61092;61093 61338;61339;61340 61339 3 GPLLEEQALTK MEGDVLDTLEALGYKGPLLEEQALTKAAEG LGYKGPLLEEQALTKAAEGGLSSPEFSELC K G P T K A 1 0 0 0 0 1 2 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1197.6605 Q52LJ0 Q52LJ0 27 37 FAM98B Protein FAM98B yes yes 2 0.00012334 137.95 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 0.87391 0.82023 30.929 11 Median 0.669 0.60928 42.046 2 0 Median 1.1689 0.98037 50.607 2 0 Median 0.75685 0.74396 23.487 4 0 Median 1.0027 0.90778 15.593 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 270430000 134010000 136430000 9234500 5067000 4167500 8208000 4297600 3910500 130370000 67104000 63262000 122630000 57539000 65087000 0 0 0 0 0 0 12026 3025 12516 61094;61095;61096;61097;61098;61099;61100;61101;61102;61103;61104 61341;61342;61343;61344;61345;61346;61347;61348;61349;61350;61351 61349 11 GPLLVQDVVFTDEMAHFDR NPVGDKLNVITVGPRGPLLVQDVVFTDEMA VQDVVFTDEMAHFDRERIPERVVHAKGAGA R G P D R E 1 1 0 3 0 1 1 1 1 0 2 0 1 2 1 0 1 0 0 3 0 0 19 0 2188.0623 P04040 P04040 48 66 CAT Catalase yes yes 3 0.020236 15.766 By MS/MS By MS/MS 1 2 0.94996 0.83308 10.569 3 Median 0.80764 0.8191 NaN 1 0 Median 1.0438 0.90881 12.305 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3547400 1780100 1767300 1093300 572120 521170 2454100 1208000 1246100 0 0 0 0 0 0 0 0 0 0 0 0 12027 1841 12517 61105;61106;61107 61352;61353;61354 61352 3 GPLLVSTESHPVK VFQKPSGVSAALALKGPLLVSTESHPVKSG LKGPLLVSTESHPVKSGIHKWISDYADSVP K G P V K S 0 0 0 0 0 0 1 1 1 0 2 1 0 0 2 2 1 0 0 2 0 0 13 0 1362.7507 Q9Y3A4 Q9Y3A4 137 149 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2;3 8.5133E-05 85.533 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 2 2 0.87975 0.84313 23.618 11 Median NaN NaN NaN 0 0 Median 0.7491 0.63599 NaN 1 0 Median 0.81548 0.78219 10.61 2 0 Median 0.94926 0.80214 38.684 4 1 Median 0.87203 0.86926 12.279 2 0 Median 1.0494 0.87042 3.2876 2 1 Median 29452000 15168000 14284000 0 0 0 552270 305480 246800 11310000 6155300 5155000 3074000 1484100 1589900 10697000 5353800 5343600 3818100 1869800 1948300 12028 4412 12518 61108;61109;61110;61111;61112;61113;61114;61115;61116;61117;61118 61355;61356;61357;61358;61359;61360;61361;61362;61363;61364;61365 61360 11 GPLMMYISK PDDEAAMGIKSCDPKGPLMMYISKMVPTSD KSCDPKGPLMMYISKMVPTSDKGRFYAFGR K G P S K M 0 0 0 0 0 0 0 1 0 1 1 1 2 0 1 1 0 0 1 0 0 0 9 0 1038.5242 P13639 P13639 392 400 EEF2 Elongation factor 2 yes yes 2 0.0032576 69.423 By MS/MS By MS/MS By MS/MS By matching 6 4 4 1 0.99734 0.93121 26.737 15 Median 1.0578 0.97285 5.518 6 0 Median 0.87732 0.75186 23.968 4 0 Median 1.0694 1.1457 21.03 4 0 Median 0.6436 0.55207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 428910000 211300000 217610000 242310000 114210000 128100000 140980000 74551000 66432000 45332000 22371000 22961000 282910 168310 114600 0 0 0 0 0 0 12029 1992 12519;12520 61119;61120;61121;61122;61123;61124;61125;61126;61127;61128;61129;61130;61131;61132;61133 61366;61367;61368;61369;61370;61371;61372;61373;61374;61375;61376;61377;61378;61379;61380;61381;61382;61383;61384;61385;61386;61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397 61381 774 32 GPLPAAPPVAPER PLMDFGNDFVPPAPRGPLPAAPPVAPERQP PRGPLPAAPPVAPERQPSWDPSPVSSTVPA R G P E R Q 3 1 0 0 0 0 1 1 0 0 1 0 0 0 5 0 0 0 0 1 0 0 13 0 1270.7034 F8W914;Q9NQC3 F8W914 64 76 RTN4 Reticulon;Reticulon-4 yes no 2 9.7258E-16 146.11 By MS/MS By MS/MS 4 5 0.48122 0.4665 35.526 9 Median 0.43289 0.40871 36.474 4 1 Median 0.5578 0.47644 29.094 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127060000 74141000 52923000 64059000 31870000 32188000 63005000 42270000 20735000 0 0 0 0 0 0 0 0 0 0 0 0 12030 1087 12521 61134;61135;61136;61137;61138;61139;61140;61141;61142 61398;61399;61400;61401;61402;61403;61404;61405;61406;61407;61408;61409 61399 12 GPLPAGTILK GQASTGPVTQIIQTKGPLPAGTILKLVTSA IIQTKGPLPAGTILKLVTSADGKPTTIITT K G P L K L 1 0 0 0 0 0 0 2 0 1 2 1 0 0 2 0 1 0 0 0 0 0 10 0 965.59097 A6NEM2;P51610 A6NEM2 714 723 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.00095511 69.825 By matching By MS/MS By MS/MS By matching 1 2 1 2 0.84105 0.71748 5.6731 6 Median NaN NaN NaN 0 0 Median 0.85723 0.75359 NaN 1 0 Median 0.63731 0.6888 6.0682 2 0 Median 0.90634 0.77847 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84105 0.71177 0.83168 2 0 Median 43520000 25057000 18462000 0 0 0 2135300 1097000 1038300 36311000 21397000 14914000 3477400 1700900 1776400 0 0 0 1596500 862800 733660 12031 509;2438 12522 61143;61144;61145;61146;61147;61148 61410;61411;61412;61413 61413 4 GPLPLSSQHR TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ NIGSRGPLPLSSQHRGDADQASNILASFGL R G P H R G 0 1 0 0 0 1 0 1 1 0 2 0 0 0 2 2 0 0 0 0 0 0 10 0 1090.5883 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;D6R8Z5 P43243 93 102 MATR3 Matrin-3 yes no 2 0.00049901 113.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 3 0.80465 0.74148 10.134 10 Median NaN NaN NaN 0 0 Median 0.96883 0.82123 NaN 1 0 Median 0.81331 0.86923 NaN 1 0 Median 0.97633 0.83148 NaN 1 0 Median 0.70585 0.7231 8.2424 4 0 Median 0.81683 0.69663 4.6974 3 0 Plateau 32702000 17542000 15160000 0 0 0 4061500 2037800 2023700 4555400 2279500 2275900 1968300 1025300 943080 17640000 9789500 7850500 4476500 2409700 2066800 12032 297 12523 61149;61150;61151;61152;61153;61154;61155;61156;61157;61158 61414;61415;61416;61417;61418;61419;61420;61421;61422;61423;61424;61425;61426;61427;61428 61418 15 GPLPLSSQHRGDADQASNILASFGLSAR TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ DQASNILASFGLSARDLDELSRYPEDKITP R G P A R D 4 2 1 2 0 2 0 3 1 1 4 0 0 1 2 5 0 0 0 0 0 0 28 1 2864.4529 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 93 120 MATR3 Matrin-3 yes no 3;4 0.0065322 22.096 By MS/MS By matching 2 1 0.67788 0.73654 16.201 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6735 0.73178 0.91667 2 0 Median 1.0715 0.96861 NaN 1 0 Median 8429100 4231400 4197700 0 0 0 0 0 0 0 0 0 0 0 0 8316900 4189700 4127200 112170 41640 70529 12033 297 12524 61159;61160;61161 61429;61430;61431 61430 3 GPLQSVQVFGR ______________________________ MPSKGPLQSVQVFGRKKTATAVAHCKRGNG K G P G R K 0 1 0 0 0 2 0 2 0 0 1 0 0 1 1 1 0 0 0 2 0 0 11 0 1186.6459 P62249;M0R210;M0R3H0;Q6IPX4 P62249 5 15 RPS16 40S ribosomal protein S16 yes no 2 3.0515E-15 190.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1 1.0631 0.93258 10.4 11 Median 0.95179 0.90774 1.8008 3 0 Median 1.0659 0.88001 3.7499 4 2 Median 1.0375 1.0459 NaN 1 0 Median 1.3221 1.094 NaN 1 1 Median 1.1291 1.1949 NaN 1 0 Median 1.2317 0.96469 NaN 1 0 Median 556360000 275780000 280580000 401010000 200880000 200130000 60480000 29173000 31307000 78135000 38692000 39443000 1751200 703660 1047500 10954000 4510500 6443800 4026100 1821200 2204900 12034 2574 12525 61162;61163;61164;61165;61166;61167;61168;61169;61170;61171;61172 61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443;61444;61445;61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456;61457;61458;61459;61460 61452 29 GPLTQVTDR PIFLPSDGQALVLGRGPLTQVTDRKCSRTQ ALVLGRGPLTQVTDRKCSRTQVELVADPET R G P D R K 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 2 0 0 1 0 0 9 0 985.51926 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1;A0A0D9SEV0;M0R000;A0A1B0GU66;M0QX49 M0QYH2 36 44 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.0083383 75.213 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12035 1418 12526 61173 61461 61461 1 GPLTVEETPR CQYHRLDVSLPFVSRGPLTVEETPRVQGET PFVSRGPLTVEETPRVQGETQPQRLLLAED R G P P R V 0 1 0 0 0 0 2 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 10 0 1097.5717 Q14676;A2AB05 Q14676 143 152 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 5.8976E-05 133.86 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.76088 0.81427 23.65 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76456 0.8207 7.8059 2 1 Median 0.63929 0.554 6.2556 2 1 Median 0.81251 0.85373 NaN 1 1 Median 1.1379 0.94583 NaN 1 0 Median 38585000 21052000 17533000 0 0 0 0 0 0 28771000 15969000 12802000 3217700 1970300 1247400 3687600 1767500 1920100 2908700 1344600 1564100 12036 2887 12527 61174;61175;61176;61177;61178;61179;61180 61462;61463;61464;61465;61466;61467;61468;61469 61464 8 GPLVNASLR KDTNVQVLMVLGAGRGPLVNASLRAAKQAD VLGAGRGPLVNASLRAAKQADRRIKLYAVE R G P L R A 1 1 1 0 0 0 0 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 9 0 925.53451 O14744;H0YJX6;H0YJ77 O14744 369 377 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0008727 93.195 By MS/MS By MS/MS 1 1 0.82033 0.74682 17.375 2 Median 0.68884 0.66048 NaN 1 0 Median 0.97693 0.84445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25512000 13747000 11766000 7765300 4747800 3017500 17747000 8998900 8748200 0 0 0 0 0 0 0 0 0 0 0 0 12037 1492 12528 61181;61182 61470;61471;61472 61471 3 GPMLDQR GGPLPEPRPLMAEPRGPMLDQRGPPLDGRG RPLMAEPRGPMLDQRGPPLDGRGGRDPRGI R G P Q R G 0 1 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 7 0 815.39597 P33240;E7EWR4;E9PID8 P33240 389 395 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.018479 62.714 By MS/MS 1 0.83444 0.87557 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83444 0.87557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1265200 662970 602230 0 0 0 0 0 0 1265200 662970 602230 0 0 0 0 0 0 0 0 0 12038 2222 12529 61183 61473;61474 61473 2 GPMTGGIQGPGPINIGAGGPPQGPR DARGLEMRGPVPSSRGPMTGGIQGPGPINI GPINIGAGGPPQGPRQVPGISGVGNPGAGM R G P P R Q 1 1 1 0 0 2 0 9 0 3 0 0 1 0 6 0 1 0 0 0 0 0 25 0 2282.159 Q9H0L4 Q9H0L4 469 493 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2;3 1.8517E-39 114.73 By MS/MS By matching 3 1 0.32953 0.33398 11.297 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34356 0.34698 8.2748 3 1 Plateau 0.41552 0.38367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42998000 32241000 10757000 0 0 0 0 0 0 42377000 31783000 10594000 620630 457240 163400 0 0 0 0 0 0 12039 3927 12530;12531 61184;61185;61186;61187 61475;61476;61477;61478;61479 61479 1854 5 GPNKHTLTQIK IEKCNNPRSVTLLIKGPNKHTLTQIKDAVR LLIKGPNKHTLTQIKDAVRDGLRAVKNAID K G P I K D 0 0 1 0 0 1 0 1 1 1 1 2 0 0 1 0 2 0 0 0 0 0 11 1 1235.6986 P40227 P40227 378 388 CCT6A T-complex protein 1 subunit zeta yes yes 3 0.034275 21.759 By MS/MS By matching 2 1 1.0278 1.003 27.643 3 Median 1.0277 0.98613 2.4045 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5729 1.5903 NaN 1 0 Median NaN NaN NaN 0 0 Median 6167000 3046400 3120600 6100600 3021800 3078700 0 0 0 0 0 0 0 0 0 66445 24608 41837 0 0 0 12040 2285 12532 61188;61189;61190 61480 61480 1 GPPDFSSDEEREPTPVLGSGAAAAGR TARNRPPLPAGTNSKGPPDFSSDEEREPTP EPTPVLGSGAAAAGRSRAAVGRKATKKTDK K G P G R S 4 2 0 2 0 0 3 4 0 0 1 0 0 1 4 3 1 0 0 1 0 0 26 1 2569.2045 P42166;P42167;G5E972 P42166 61 86 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3 8.2243E-46 135.01 By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 0.59363 0.57427 31.522 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41589 0.44478 25.086 4 1 Median 0.75343 0.6932 23.388 5 1 Median 0.37647 0.41072 6.7644 2 0 Median 0.64595 0.58394 NaN 1 0 Median 236030000 159460000 76563000 0 0 0 0 0 0 139520000 97010000 42507000 35151000 20541000 14610000 60249000 41298000 18951000 1110200 614930 495250 12041 2306;2307 12533 61191;61192;61193;61194;61195;61196;61197;61198;61199;61200;61201;61202 61481;61482;61483;61484;61485;61486;61487;61488;61489;61490;61491;61492;61493;61494;61495;61496;61497;61498;61499 61493 19 GPPIEDAIASSDVLETASK VSSEENGHSFHTPQKGPPIEDAIASSDVLE EDAIASSDVLETASKSANPPHTIQASEEQS K G P S K S 3 0 0 2 0 0 2 1 0 2 1 1 0 0 2 3 1 0 0 1 0 0 19 0 1898.9473 B7Z524;H0YDX7;J3QT46;Q9Y450;E9PHZ9;E9PS53 B7Z524 32 50 HBS1L HBS1-like protein yes no 2 1.1324E-07 70.412 By MS/MS By MS/MS 1 2 0.75956 0.75432 10.705 3 Median 0.75956 0.75432 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73372 0.80605 14.137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8116500 4461400 3655200 4480800 2366800 2114000 0 0 0 3635700 2094600 1541100 0 0 0 0 0 0 0 0 0 12042 632 12534 61203;61204;61205 61500;61501;61502 61500 3 GPPNHHMGPMSER LNPGQGPGPNKGDSRGPPNHHMGPMSERRH SRGPPNHHMGPMSERRHEQSGGPEHGPERG R G P E R R 0 1 1 0 0 0 1 2 2 0 0 0 2 0 3 1 0 0 0 0 0 0 13 0 1445.6292 Q9C0J8 Q9C0J8 961 973 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 0.031961 19.394 By MS/MS 1 0.54845 0.58823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54845 0.58823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 701970 444700 257270 0 0 0 0 0 0 701970 444700 257270 0 0 0 0 0 0 0 0 0 12043 3907 12535 61206 61503 61503 1 GPPPPPGDENREMDDPSVGPK TPTVLPMGAPVPRPRGPPPPPGDENREMDD GDENREMDDPSVGPKIPQALEKILQLKESR R G P P K I 0 1 1 3 0 0 2 3 0 0 0 1 1 0 7 1 0 0 0 1 0 0 21 1 2186.9902 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 248 268 SF3B2 Splicing factor 3B subunit 2 yes no 3 1.1687E-05 57.989 By matching By MS/MS By MS/MS 1 2 1 0.36919 0.37035 16.171 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31321 0.3569 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36407 0.40318 26.173 2 1 Median 0.44123 0.3843 NaN 1 0 Median 57615000 41836000 15779000 0 0 0 0 0 0 27194000 20273000 6920300 0 0 0 28626000 20255000 8370800 1795600 1307500 488070 12044 2817 12536 61207;61208;61209;61210 61504;61505 61504 2 GPPPPPTASEPTR RRKLIVAYVDDLDRRGPPPPPTASEPTRRS RRGPPPPPTASEPTRRSTK___________ R G P T R R 1 1 0 0 0 0 1 1 0 0 0 0 0 0 6 1 2 0 0 0 0 0 13 0 1302.6568 O14776 O14776 1082 1094 TCERG1 Transcription elongation regulator 1 yes yes 2 0.0010843 74.162 By MS/MS By MS/MS 1 2 0.47491 0.40459 38.096 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68014 0.74692 NaN 1 1 Median 0.4551 0.38771 6.0272 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6406000 3931700 2474300 0 0 0 0 0 0 3155700 1761000 1394700 3250300 2170600 1079700 0 0 0 0 0 0 12045 1494 12537 61211;61212;61213 61506;61507;61508 61506 3 GPPPPPTASEPTRR RRKLIVAYVDDLDRRGPPPPPTASEPTRRS RGPPPPPTASEPTRRSTK____________ R G P R R S 1 2 0 0 0 0 1 1 0 0 0 0 0 0 6 1 2 0 0 0 0 0 14 1 1458.7579 O14776 O14776 1082 1095 TCERG1 Transcription elongation regulator 1 yes yes 3 0.00011641 69.03 By MS/MS By MS/MS 1 1 0.41615 0.45409 3.1234 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36521 0.44417 NaN 1 0 Median 0.47419 0.46423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3953600 2830700 1122900 0 0 0 0 0 0 2703200 2006900 696310 1250400 823760 426630 0 0 0 0 0 0 12046 1494 12538 61214;61215 61509;61510;61511;61512 61509 4 GPPPSWGR VRVELSNGEKRSRNRGPPPSWGRRPRDDYR EKRSRNRGPPPSWGRRPRDDYRRRSPPPRR R G P G R R 0 1 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 8 0 852.42424 P84103 P84103 91 98 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.0022895 110.61 By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1 0.67919 0.66335 8.5689 7 Median NaN NaN NaN 0 0 Median 0.71754 0.66922 14.561 2 0 Median 0.63728 0.61134 NaN 1 0 Median 0.89313 0.73582 NaN 1 0 Median 0.62328 0.64139 4.759 2 0 Median 0.84255 0.68178 NaN 1 0 Median 18389000 10944000 7444300 0 0 0 816010 474170 341840 5944600 3659600 2285000 625160 305140 320020 8309100 4968900 3340100 2693700 1536400 1157300 12047 2668 12539 61216;61217;61218;61219;61220;61221;61222 61513;61514;61515;61516;61517;61518;61519;61520;61521;61522 61517 10 GPPPSYGGSSR SYESYGNSRSAPPTRGPPPSYGGSSRYDDY PPTRGPPPSYGGSSRYDDYSSSRDGYGGSR R G P S R Y 0 1 0 0 0 0 0 3 0 0 0 0 0 0 3 3 0 0 1 0 0 0 11 0 1060.4938 P38159;H3BUY5;Q96E39 P38159 299 309 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.00044263 69.598 By matching By MS/MS By MS/MS 1 1 2 0.74148 0.67879 13.455 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62776 0.60913 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59723 0.6023 NaN 1 0 Median 0.87864 0.76421 1.4481 2 0 Median 4964200 2847000 2117200 0 0 0 0 0 0 545530 362300 183220 0 0 0 2721400 1564500 1157000 1697300 920240 777040 12048 2273;3632 12540 61223;61224;61225;61226 61523;61524;61525;61526 61524 4 GPPPTDPYGRPPPYDR FPPPTNSGMPTSDSRGPPPTDPYGRPPPYD PPPTDPYGRPPPYDRGDYGPPGREMDTART R G P D R G 0 2 0 2 0 0 0 2 0 0 0 0 0 0 7 0 1 0 2 0 0 0 16 1 1780.8533 F8WJN3;Q16630 F8WJN3 304 319 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2;3 1.1644E-06 90.827 By MS/MS By MS/MS By MS/MS 1 3 3 0.38451 0.37504 32.668 7 Median NaN NaN NaN 0 0 Median 0.47348 0.43001 NaN 1 0 Median 0.32106 0.36023 24.118 3 0 Plateau 0.44777 0.41722 29.897 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120310000 91026000 29287000 0 0 0 4367500 3026600 1340900 91298000 70820000 20478000 24647000 17179000 7468100 0 0 0 0 0 0 12049 1099 12541 61227;61228;61229;61230;61231;61232;61233 61527;61528;61529;61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547 61541 21 GPPQEEEEEEDEEEEATKEDAEAPGIR EVEKNSTPSEPGSGRGPPQEEEEEEDEEEE EEEATKEDAEAPGIRDHESL__________ R G P I R D 3 1 0 2 0 1 12 2 0 1 0 1 0 0 3 0 1 0 0 0 0 0 27 1 3041.2745 P51858 P51858 209 235 HDGF Hepatoma-derived growth factor yes yes 3 2.811E-52 123.68 By matching By MS/MS By MS/MS 1 2 2 0.61154 0.57308 10.387 5 Median NaN NaN NaN 0 0 Median 0.74013 0.69092 NaN 1 0 Median 0.50095 0.55707 4.0078 2 1 Median 0.62425 0.56669 8.3991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60694000 41761000 18933000 0 0 0 423080 224920 198160 57232000 39737000 17496000 3038600 1799900 1238700 0 0 0 0 0 0 12050 2444 12542 61234;61235;61236;61237;61238 61548;61549;61550;61551;61552;61553 61548 6 GPPQEEEEEEDEEEEATKEDAEAPGIRDHESL EVEKNSTPSEPGSGRGPPQEEEEEEDEEEE KEDAEAPGIRDHESL_______________ R G P S L - 3 1 0 3 0 1 13 2 1 1 1 1 0 0 3 1 1 0 0 0 0 0 32 2 3622.5191 P51858 P51858 209 240 HDGF Hepatoma-derived growth factor yes yes 4 2.3452E-09 42.319 By MS/MS 2 0.53402 0.59517 4.0838 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53402 0.59517 4.0838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42525000 26629000 15896000 0 0 0 0 0 0 42525000 26629000 15896000 0 0 0 0 0 0 0 0 0 12051 2444 12543 61239;61240 61554 61554 1 GPPQSPVFEGVYNNSR GAAAIGSARGQSTGKGPPQSPVFEGVYNNS PPQSPVFEGVYNNSRMLHFLTAVVGSTCDV K G P S R M 0 1 2 0 0 1 1 2 0 0 0 0 0 1 3 2 0 0 1 2 0 0 16 0 1746.8325 Q8WWM7;H3BUF6;H3BSK9 Q8WWM7 107 122 ATXN2L Ataxin-2-like protein yes no 2 3.4248E-06 76.655 By MS/MS 1 1.223 1.1816 NaN 1 Median 1.223 1.1816 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6466000 2530700 3935300 6466000 2530700 3935300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12052 3511 12544 61241 61555 61555 1 GPPVFTQEER LIVGVHTDEEIAKHKGPPVFTQEERYKMVQ IAKHKGPPVFTQEERYKMVQAIKWVDEVVP K G P E R Y 0 1 0 0 0 1 2 1 0 0 0 0 0 1 2 0 1 0 0 1 0 0 10 0 1158.5669 I3L2Q1;I3L1R7;Q99447 I3L2Q1 67 76 PCYT2 Ethanolamine-phosphate cytidylyltransferase yes no 2 0.034259 32.841 By MS/MS 1 1.0702 0.92424 NaN 1 Median NaN NaN NaN 0 0 Median 1.0702 0.92424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 958160 438120 520040 0 0 0 958160 438120 520040 0 0 0 0 0 0 0 0 0 0 0 0 12053 1279 12545 61242 61556 61556 1 GPQAGLGPR TRGPPRGGPGGELPRGPQAGLGPRRSQQGP GGELPRGPQAGLGPRRSQQGPRKEPRKIIA R G P P R R 1 1 0 0 0 1 0 3 0 0 1 0 0 0 2 0 0 0 0 0 0 0 9 0 851.46135 E7EX73;E9PGM1;E7EUU4;C9K073;C9J2Z7 E7EX73 531 539 EIF4G1 yes no 2 0.0014144 81.784 By MS/MS 1 0.8426 0.72275 NaN 1 Median NaN NaN NaN 0 0 Median 0.8426 0.72275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1965900 1056900 909010 0 0 0 1965900 1056900 909010 0 0 0 0 0 0 0 0 0 0 0 0 12054 894 12546 61243 61557 61557 1 GPQEVAVYVQELQK SSEATISQLRSELAKGPQEVAVYVQELQKL KGPQEVAVYVQELQKLKSSVNELTQKNQTL K G P Q K L 1 0 0 0 0 3 2 1 0 0 1 1 0 0 1 0 0 0 1 3 0 0 14 0 1586.8304 Q15075 Q15075 279 292 EEA1 Early endosome antigen 1 yes yes 2 0.034081 40.496 By MS/MS 2 0.82997 0.79814 8.1508 2 Median 0.82997 0.79814 8.1508 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8763300 4479300 4284000 8763300 4479300 4284000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12055 2926 12547 61244;61245 61558;61559 61558 2 GPQGVEDGDRPQPSSK CFGAARLLYPRFQSRGPQGVEDGDRPQPSS PQGVEDGDRPQPSSKTPRIPKIYTKTGDKG R G P S K T 0 1 0 2 0 2 1 3 0 0 0 1 0 0 3 2 0 0 0 1 0 0 16 1 1652.7754 Q96EY8;F5H4Z7;A0A087X114;S4R3Z1;F5H079 Q96EY8 36 51 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 3 0.060874 11.044 By matching By matching By MS/MS 1 1 1 0.95674 0.90179 33.521 3 Median NaN NaN NaN 0 0 Median 0.95674 0.91312 NaN 1 0 Median 0.49976 0.50782 NaN 1 0 Median 1.0187 0.90179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 847510 459630 387880 0 0 0 154910 85761 69148 284560 169390 115170 408040 204480 203560 0 0 0 0 0 0 12056 3645 12548 61246;61247;61248 61560 61560 1 GPQITGPSLEGDLGLK SVPSANIEGLEGKLKGPQITGPSLEGDLGL PQITGPSLEGDLGLKGAKPQGHIGVDASAP K G P L K G 0 0 0 1 0 1 1 4 0 1 3 1 0 0 2 1 1 0 0 0 0 0 16 0 1580.841 Q09666 Q09666 372 387 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.5009E-10 107.18 By MS/MS By matching By MS/MS By MS/MS 2 1 1 3 0.86839 0.82137 39.928 7 Median 0.78649 0.8237 50.399 2 1 Median 1.0693 0.93559 NaN 1 0 Median 1.0823 1.1594 NaN 1 0 Median 0.86839 0.82137 41.098 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25550000 12008000 13542000 13709000 6709300 6999500 2132700 737330 1395400 8105400 3699400 4406100 1602900 861570 741340 0 0 0 0 0 0 12057 2749 12549 61249;61250;61251;61252;61253;61254;61255 61561;61562;61563;61564 61562 4 GPQLFHMDPSGTFVQCDAR RPFGVALLFGGVDEKGPQLFHMDPSGTFVQ FHMDPSGTFVQCDARAIGSASEGAQSSLQE K G P A R A 1 1 0 2 1 2 0 2 1 0 1 0 1 2 2 1 1 0 0 1 0 0 19 0 2161.9673 P28066 P28066 150 168 PSMA5 Proteasome subunit alpha type-5 yes yes 3 0.059086 8.2215 By MS/MS By matching 1 1 1.0753 0.93004 27.831 2 Median NaN NaN NaN 0 0 Median 0.89538 0.76389 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2914 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1223700 544940 678750 0 0 0 840960 373010 467950 0 0 0 382730 171920 210800 0 0 0 0 0 0 12058 2159 12550 61256;61257 61565 61565 1 GPQNAFFLVK KFPEKKGGLKELFGKGPQNAFFLVKFWADL ELFGKGPQNAFFLVKFWADLNCNIQDDAGA K G P V K F 1 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 10 0 1119.6077 H0YE88;P28347;E9PKB7 H0YE88 280 289 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 0.0061692 49.442 By MS/MS By matching By matching 1 1 1 0.77861 0.75383 13.168 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77861 0.75383 NaN 1 0 Median 0.852 0.75988 NaN 1 0 Median 0.55317 0.60256 NaN 1 0 Median NaN NaN NaN 0 0 Median 14641000 8084300 6556300 0 0 0 0 0 0 11173000 6044900 5128500 1110000 636000 474030 2357300 1403400 953850 0 0 0 12059 1178 12551 61258;61259;61260 61566 61566 1 GPQPPTVSPIR PFEKAAFQKQNDTPKGPQPPTVSPIRSSRP DTPKGPQPPTVSPIRSSRPPPAKRKKSQSR K G P I R S 0 1 0 0 0 1 0 1 0 1 0 0 0 0 4 1 1 0 0 1 0 0 11 0 1147.635 P46087 P46087 779 789 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00014726 116.37 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 3 0.65069 0.61818 19.258 8 Median NaN NaN NaN 0 0 Median 0.86353 0.72481 NaN 1 0 Median 0.57563 0.61389 NaN 1 0 Median 0.45644 0.38908 NaN 1 0 Median 0.5671 0.58415 18.291 2 0 Median 0.74714 0.6225 5.5856 3 0 Median 41608000 24558000 17050000 0 0 0 7296000 4538400 2757600 5602400 3389900 2212500 1193300 602480 590860 19088000 11275000 7813100 8428200 4752400 3675800 12060 2338 12552 61261;61262;61263;61264;61265;61266;61267;61268 61567;61568;61569;61570;61571;61572;61573;61574;61575 61570 9 GPQVSGELKGPGVDVNLK FGISTPGSDLHVNAKGPQVSGELKGPGVDV VSGELKGPGVDVNLKGPRISAPNVDFNLEG K G P L K G 0 0 1 1 0 1 1 4 0 0 2 2 0 0 2 1 0 0 0 3 0 0 18 1 1792.9683 Q09666 Q09666 5426 5443 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.021666 17.863 By MS/MS 1 0.87852 0.8234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87852 0.8234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1918300 1092500 825840 0 0 0 0 0 0 0 0 0 1918300 1092500 825840 0 0 0 0 0 0 12061 2749 12553 61269 61576 61576 1 GPQVSGELKGPGVDVNLKGPR FGISTPGSDLHVNAKGPQVSGELKGPGVDV ELKGPGVDVNLKGPRISAPNVDFNLEGPKV K G P P R I 0 1 1 1 0 1 1 5 0 0 2 2 0 0 3 1 0 0 0 3 0 0 21 2 2103.1437 Q09666 Q09666 5426 5446 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 2.1325E-12 79.511 By MS/MS By matching 2 1 0.70796 0.77043 8.1989 3 Plateau 0.70175 0.76368 1.2449 2 0 Median NaN NaN NaN 0 0 Median 0.66275 0.87948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29800000 18675000 11125000 26132000 16552000 9580100 0 0 0 3668700 2123800 1544900 0 0 0 0 0 0 0 0 0 12062 2749 12554 61270;61271;61272 61577;61578 61577 2 GPQVSSALNLDTSK GEGHLSVKGSGGEWKGPQVSSALNLDTSKF KGPQVSSALNLDTSKFAGGLHFSGPKVEGG K G P S K F 1 0 1 1 0 1 0 1 0 0 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1415.7256 Q09666 Q09666 5599 5612 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.9317E-15 152.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 4 8 1 1 1.0276 0.9682 15.204 17 Median 0.96483 0.9682 17.028 3 0 Plateau 0.98174 0.87341 NaN 1 1 Median 1.0239 1.0905 11.815 3 1 Plateau 1.1444 1.0165 11.523 8 0 Median 1.0285 1.0791 NaN 1 0 Median 0.92065 0.78901 NaN 1 0 Median 174590000 84553000 90033000 35218000 16379000 18839000 15811000 8833900 6976800 51137000 24901000 26236000 66559000 31603000 34956000 4329400 2076900 2252500 1531400 759380 771980 12063 2749 12555 61273;61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288;61289;61290 61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589;61590;61591;61592;61593;61594;61595;61596;61597;61598;61599;61600;61601;61602;61603;61604 61586 26 GPSAAFAPAAAEPK ASQTPSKPASADGHRGPSAAFAPAAAEPKL RGPSAAFAPAAAEPKLFGGFNSSDTVTSPQ R G P P K L 6 0 0 0 0 0 1 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 14 0 1283.651 P12931 P12931 49 62 SRC Proto-oncogene tyrosine-protein kinase Src yes yes 2 0.016501 29.743 By matching By matching By MS/MS 1 1 1 1.4263 1.5441 43.401 3 Plateau 1.4263 1.5441 NaN 1 0 Median 1.0508 0.9948 NaN 1 0 Median 0.63013 0.64821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13496000 5670500 7825900 7659900 2583700 5076100 3105700 1576800 1528900 2730800 1509900 1220800 0 0 0 0 0 0 0 0 0 12064 1984 12556 61291;61292;61293 61605 61605 1 GPSAAGEQEPDKESGASVDEVAR EEAAKKKRRKKKKSKGPSAAGEQEPDKESG EPDKESGASVDEVARQLERSALEDKERDED K G P A R Q 4 1 0 2 0 1 4 3 0 0 0 1 0 0 2 3 0 0 0 2 0 0 23 1 2285.0408 P50579;G3V1U3;F8VSC4 P50579 47 69 METAP2 Methionine aminopeptidase 2 yes no 3 1.4244E-11 53.342 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.70489 0.64423 29.523 5 Median 0.75185 0.76193 NaN 1 0 Median 0.68258 0.62578 4.1091 2 1 Median 1.0421 1.1544 NaN 1 0 Median 0.57636 0.54085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11500000 6934200 4566100 2130400 1217500 912830 3331900 2005100 1326700 888600 484360 404240 5149400 3227100 1922300 0 0 0 0 0 0 12065 2418 12557 61294;61295;61296;61297;61298 61606;61607;61608;61609 61608 4 GPSAGGGPGSGTSPQVEWTAR GPVPEAAQPFLFTPRGPSAGGGPGSGTSPQ GPGSGTSPQVEWTARRLVWVPSELHGFEAA R G P A R R 2 1 0 0 0 1 1 6 0 0 0 0 0 0 3 3 2 1 0 1 0 0 21 0 1954.9133 Q7Z406 Q7Z406 33 53 MYH14 Myosin-14 no no 2 6.771E-12 79.771 By matching By MS/MS 1 1 0.67204 0.60412 19.013 2 Median 0.72205 0.69105 NaN 1 0 Median 0.62549 0.52812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7224100 4109100 3115000 4831800 2706400 2125400 2392300 1402700 989600 0 0 0 0 0 0 0 0 0 0 0 0 12066 3242 12558 61299;61300 61610;61611 61610 2 GPSFDVQVGLHELLGHGSGK TFLEEDDKDLYILWKGPSFDVQVGLHELLG VQVGLHELLGHGSGKLFVQDEKGAFNFDQE K G P G K L 0 0 0 1 0 1 1 5 2 0 3 1 0 1 1 2 0 0 0 2 0 0 20 0 2033.033 G3V1D3;G3V180;Q9NY33 G3V1D3 459 478 DPP3 Dipeptidyl peptidase 3 yes no 3 1.3652E-11 97.271 By MS/MS By MS/MS 1 1 0.9186 0.83098 7.1964 2 Median 0.93441 0.87436 NaN 1 0 Median 0.90306 0.78975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21046000 9936500 11110000 5446600 2916000 2530600 15599000 7020500 8578900 0 0 0 0 0 0 0 0 0 0 0 0 12067 1102 12559 61301;61302 61612;61613;61614 61614 3 GPSGGGEEPALSQYQR LWDGEDSSFLVVRLRGPSGGGEEPALSQYQ PSGGGEEPALSQYQRLLCINPPLFEIYQVL R G P Q R L 1 1 0 0 0 2 2 4 0 0 1 0 0 0 2 2 0 0 1 0 0 0 16 0 1631.754 Q99567;J3KMX1 Q99567 85 100 NUP88 Nuclear pore complex protein Nup88 yes no 2 7.9239E-36 206.58 By matching By MS/MS By MS/MS 1 1 1 1.0058 0.90058 2.7112 3 Median NaN NaN NaN 0 0 Median 1.0157 0.90058 NaN 1 0 Median 0.87517 0.91335 NaN 1 0 Median 1.0058 0.86673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10050000 4773100 5277400 0 0 0 1188900 628100 560790 5484700 2476700 3008000 3376800 1668200 1708500 0 0 0 0 0 0 12068 3753 12560 61303;61304;61305 61615;61616;61617 61616 3 GPSGLLTYTGK QYLDSLKVGDVVEFRGPSGLLTYTGKGHFN VEFRGPSGLLTYTGKGHFNIQPNKKSPPEP R G P G K G 0 0 0 0 0 0 0 3 0 0 2 1 0 0 1 1 2 0 1 0 0 0 11 0 1092.5815 Q9UHQ9;H7C0R7 Q9UHQ9 148 158 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 6.7082E-05 152.06 By MS/MS By matching By MS/MS 1 1 1 1.112 0.9958 19.666 3 Median 0.81179 0.73614 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.112 1.0649 NaN 1 0 Median 1.1851 0.9958 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48837000 23058000 25779000 38544000 18557000 19987000 0 0 0 4534500 2239400 2295100 5759000 2261700 3497400 0 0 0 0 0 0 12069 4280 12561 61306;61307;61308 61618;61619;61620 61619 3 GPSGLLVYQGK QYLESMQIGDTIEFRGPSGLLVYQGKGKFA IEFRGPSGLLVYQGKGKFAIRPDKKSNPII R G P G K G 0 0 0 0 0 1 0 3 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1117.6132 P00387;B1AHF3 P00387 144 154 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 0.00014953 112.84 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1503 0.99887 17.972 4 Median 0.97814 0.8824 NaN 1 0 Median 1.3528 1.1307 NaN 1 0 Median 0.91944 0.88241 NaN 1 1 Median 1.4995 1.2593 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 320870000 153350000 167520000 241150000 120420000 120730000 67130000 27001000 40128000 6038500 3136100 2902400 6551900 2790900 3761000 0 0 0 0 0 0 12070 1816 12562 61309;61310;61311;61312 61621;61622;61623;61624;61625;61626;61627 61626 7 GPSGQGQGQFLIQQVTLK ERYLGLPGSLKWEDRGPSGQGQGQFLIQQV GQGQGQFLIQQVTLKIPISIEFVFESGSAQ R G P L K I 0 0 0 0 0 5 0 4 0 1 2 1 0 1 1 1 1 0 0 1 0 0 18 0 1885.0058 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 310 327 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0013073 36.284 By MS/MS By matching By matching By matching 1 1 2 1 0.95187 1.007 9.777 5 Median 0.92781 0.87845 NaN 1 0 Median 1.1157 1.007 NaN 1 0 Median 0.90398 0.97652 5.6379 2 0 Median 1.3115 1.1409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10129000 5077900 5050900 4504600 2291700 2212900 757660 365700 391960 4269700 2151200 2118500 596830 269320 327510 0 0 0 0 0 0 12071 2835 12563 61313;61314;61315;61316;61317 61628;61629 61628 2 GPSGSASSRPGVSATPPK APLSRKSSTPKTATRGPSGSASSRPGVSAT GSASSRPGVSATPPKSPVYLDLAYLPSGSS R G P P K S 2 1 0 0 0 0 0 3 0 0 0 1 0 0 4 5 1 0 0 1 0 0 18 1 1638.8325 Q66K74 Q66K74 927 944 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 0.062429 9.7575 By MS/MS 2 0.7741 0.6974 12.582 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7741 0.6974 12.582 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 634990 381700 253290 0 0 0 0 0 0 0 0 0 634990 381700 253290 0 0 0 0 0 0 12072 3121 12564 61318;61319 61630 61630 1 GPSLDIDTPDVNIEGPEGK PKVEGDLKGPEIDIKGPSLDIDTPDVNIEG DIDTPDVNIEGPEGKLKGPKFKMPEMNIKA K G P G K L 0 0 1 3 0 0 2 3 0 2 1 1 0 0 3 1 1 0 0 1 0 0 19 0 1951.9375 Q09666 Q09666 4423 4441 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.1415E-17 136.99 By MS/MS By matching By matching 1 1 3 0.72112 0.66498 17.235 5 Median 0.64002 0.64065 NaN 1 0 Median 0.83052 0.72261 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8612 0.77857 23.008 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11051000 6414400 4636900 9722100 5703800 4018300 397180 221860 175320 0 0 0 932120 488810 443310 0 0 0 0 0 0 12073 2749 12565 61320;61321;61322;61323;61324 61631;61632 61631 2 GPSLKGDLDASVPSMK SMPKVSGPDLDLNLKGPSLKGDLDASVPSM PSLKGDLDASVPSMKVHAPGLNLSGVGGKM K G P M K V 1 0 0 2 0 0 0 2 0 0 2 2 1 0 2 3 0 0 0 1 0 0 16 1 1600.8131 Q09666 Q09666 5308 5323 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 4.3041E-05 55.546 By MS/MS By MS/MS 2 1 1.0361 1.1755 13.894 3 Median 1.0243 1.0651 17.92 2 0 Median NaN NaN NaN 0 0 Median 1.0361 1.1755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15196000 6356700 8839300 7617800 3207600 4410200 0 0 0 7578200 3149100 4429100 0 0 0 0 0 0 0 0 0 12074 2749 12566 61325;61326;61327 61633;61634;61635;61636 61633 4 GPSLNPVLDYDHGSR WEEKRHFRRDSFDDRGPSLNPVLDYDHGSR GPSLNPVLDYDHGSRSQESGYYDRMDYEDD R G P S R S 0 1 1 2 0 0 0 2 1 0 2 0 0 0 2 2 0 0 1 1 0 0 15 0 1625.7798 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 193 207 MATR3 Matrin-3 yes no 2;3 1.2884E-08 135.99 By MS/MS By MS/MS By MS/MS By matching 2 4 2 3 0.73638 0.69412 42.941 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64814 0.68343 1.0962 2 1 Median 0.91702 0.78273 59.286 4 1 Median 0.71852 0.72467 2.8469 2 0 Median 0.77141 0.63521 52.907 3 0 Median 203950000 121260000 82682000 0 0 0 0 0 0 127710000 77886000 49823000 26365000 14306000 12059000 44931000 25976000 18955000 4940100 3094800 1845300 12075 297 12567 61328;61329;61330;61331;61332;61333;61334;61335;61336;61337;61338 61637;61638;61639;61640;61641;61642;61643 61638 7 GPSLQGDLAVSGDIK ATTKLNVGAPDVTLRGPSLQGDLAVSGDIK GPSLQGDLAVSGDIKCPKVSVGAPDLSLEA R G P I K C 1 0 0 2 0 1 0 3 0 1 2 1 0 0 1 2 0 0 0 1 0 0 15 0 1455.7569 Q09666 Q09666 5367 5381 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 9.9901E-10 110.08 By MS/MS By MS/MS 1 1 1.4913 1.3923 134.54 2 Median 0.53587 0.53776 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.1502 3.6049 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33718000 19569000 14150000 27018000 18276000 8741700 0 0 0 0 0 0 6700900 1292900 5407900 0 0 0 0 0 0 12076 2749 12568 61339;61340 61644;61645 61644 2 GPSPFSPVQLHQLR ALIPGDPQAMSQPNRGPSPFSPVQLHQLRA RGPSPFSPVQLHQLRAQILAYKMLARGQPL R G P L R A 0 1 0 0 0 2 0 1 1 0 2 0 0 1 3 2 0 0 0 1 0 0 14 0 1561.8365 P51531;F6VDE0;A0A0U1RQZ9;A0A0A0MT03;A0A1B0GWA8;A0A1B0GU54;F6RS74 P51531 170 183 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 3.6591E-06 87.719 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.74246 0.71233 20.016 4 Median NaN NaN NaN 0 0 Median 0.98548 1.0098 NaN 1 0 Median 0.59561 0.64923 NaN 1 0 Median 0.85708 0.75316 NaN 1 0 Median 0.64317 0.67371 NaN 1 0 Median NaN NaN NaN 0 0 Median 32930000 20039000 12891000 0 0 0 734060 405680 328370 28760000 17660000 11100000 1356900 734120 622800 2078400 1238700 839750 0 0 0 12077 2433 12569 61341;61342;61343;61344 61646;61647;61648;61649;61650 61646 5 GPSPSPVGSPASVAQSR SPFSPHTSPHLPGIRGPSPSPVGSPASVAQ SPSPVGSPASVAQSRSGPLSPAAVPGNQMP R G P S R S 2 1 0 0 0 1 0 2 0 0 0 0 0 0 4 5 0 0 0 2 0 0 17 0 1579.7954 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 694 710 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 4.6453E-05 62.891 By MS/MS 1 0.6442 0.71564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6442 0.71564 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2420300 1391100 1029100 0 0 0 0 0 0 2420300 1391100 1029100 0 0 0 0 0 0 0 0 0 12078 1480 12570 61345 61651 61651 1 GPSSVEDIK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS TPKTPKGPSSVEDIKAKMQASIEKGGSLPK K G P I K A 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 9 0 930.46583 P06748 P06748 240 248 NPM1 Nucleophosmin yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 4 2 3 0.99497 0.87038 14.394 19 Median 0.99276 0.93065 14.228 4 0 Median 0.7963 0.66748 22.814 3 1 Median 0.91236 0.87038 11.003 3 0 Median 1.0845 0.90275 7.8321 4 0 Median 0.93742 0.97095 9.0675 2 0 Median 1.0178 0.82182 10.514 3 0 Median 424330000 215340000 209000000 23655000 12196000 11459000 32201000 17234000 14967000 177880000 92883000 84992000 149810000 72380000 77433000 22787000 11746000 11041000 18004000 8897500 9106200 12079 1877 12571 61346;61347;61348;61349;61350;61351;61352;61353;61354;61355;61356;61357;61358;61359;61360;61361;61362;61363;61364 61652;61653;61654;61655;61656;61657;61658;61659;61660;61661;61662;61663;61664;61665;61666;61667;61668;61669;61670;61671;61672;61673;61674;61675;61676;61677;61678;61679;61680 61672 29 GPSSVEDIKAK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS KTPKGPSSVEDIKAKMQASIEKGGSLPKVE K G P A K M 1 0 0 1 0 0 1 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 11 1 1129.5979 P06748 P06748 240 250 NPM1 Nucleophosmin yes yes 2 0.019848 48.423 By MS/MS By matching By matching By MS/MS By MS/MS 4 2 3 4 2 0.9672 0.97778 13.741 15 Median 1.0723 1.0207 12.588 4 0 Median 0.94379 0.87193 27.09 2 0 Median 0.89123 0.91562 10.178 3 0 Median 1.1113 0.98268 7.1832 4 0 Median 0.87383 0.89722 17.954 2 0 Median NaN NaN NaN 0 0 Median 14322000 7126100 7195600 2699400 1330100 1369200 637590 292150 345440 2130800 1114500 1016300 4295400 1981200 2314200 4558700 2408200 2150500 0 0 0 12080 1877 12572 61365;61366;61367;61368;61369;61370;61371;61372;61373;61374;61375;61376;61377;61378;61379 61681;61682;61683;61684;61685;61686 61683 6 GPSWDPFR ______________________________ VPFSLLRGPSWDPFRDWYPHSRLFDQAFGL R G P F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 1 0 1 0 0 0 0 8 0 960.44537 P04792;F8WE04 P04792 13 20 HSPB1 Heat shock protein beta-1 yes no 2 0.0027345 105.39 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.59524 0.56248 36.47 4 Median 0.67167 0.63595 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5275 0.49749 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45982 0.448 NaN 1 0 Median 1.2286 1.0166 NaN 1 0 Median 11350000 6988000 4361700 8005100 4790800 3214300 0 0 0 2119300 1405900 713410 0 0 0 1054200 717660 336570 170950 73556 97390 12081 1851 12573 61380;61381;61382;61383 61687;61688;61689 61688 3 GPSWDPFRDWYPHSR ______________________________ GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW R G P S R L 0 2 0 2 0 0 0 1 1 0 0 0 0 1 3 2 0 2 1 0 0 0 15 1 1901.8598 P04792;F8WE04 P04792 13 27 HSPB1 Heat shock protein beta-1 yes no 3;4 0.029294 17.917 By MS/MS By matching 2 1 0.66081 0.70636 9.8025 3 Median 0.64304 0.68736 3.8549 2 0 Median 0.95273 0.80912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40466000 23839000 16627000 38979000 23125000 15854000 1487200 714130 773070 0 0 0 0 0 0 0 0 0 0 0 0 12082 1851 12574 61384;61385;61386 61690;61691;61692 61691 3 GPSYGLSAEVK ______________________________ HFNKGPSYGLSAEVKNKIASKYDHQAEEDL K G P V K N 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 2 0 0 1 1 0 0 11 0 1106.5608 Q15417;K7ES69 Q15417 7 17 CNN3;CNN2 Calponin-3 no no 2 0.00016143 101.65 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 1.0133 0.8652 60.63 11 Median 1.0423 0.96305 13.107 3 0 Median 1.0133 0.8652 105.12 3 0 Plateau 0.96147 0.92053 14.055 2 0 Median 1.0968 0.90906 20.704 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119860000 61031000 58827000 59345000 29220000 30125000 37616000 20590000 17026000 15448000 7825700 7622200 7448600 3394900 4053700 0 0 0 0 0 0 12083 2950 12575 61387;61388;61389;61390;61391;61392;61393;61394;61395;61396;61397;61398 61693;61694;61695;61696;61697;61698;61699;61700;61701;61702;61703 61694 11 GPTEQLVSPEPEVHDIER SRALGDFDYKCVHGKGPTEQLVSPEPEVHD EQLVSPEPEVHDIERSEEDDQFIILACDGI K G P E R S 0 1 0 1 0 1 4 1 1 1 1 0 0 0 3 1 1 0 0 2 0 0 18 0 2030.9909 P35813 P35813 209 226 PPM1A Protein phosphatase 1A yes yes 3 1.0164E-06 67.449 By MS/MS 1 0.48849 0.52938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48849 0.52938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5118800 3494300 1624500 0 0 0 0 0 0 5118800 3494300 1624500 0 0 0 0 0 0 0 0 0 12084 2251 12576 61399 61704 61704 1 GPTMPDEDFFSLIQR RIDDQRCPPPDVLPRGPTMPDEDFFSLIQR GPTMPDEDFFSLIQRVQAKRMDEQRVDLAG R G P Q R V 0 1 0 2 0 1 1 1 0 1 1 0 1 2 2 1 1 0 0 0 0 0 15 0 1751.8189 A0A0A0MSK4;A0A0A0MRC4;Q86YR5 A0A0A0MSK4 625 639 GPSM1 G-protein-signaling modulator 1 yes no 2 0.00032492 51.927 By MS/MS 1 0.6093 0.59863 NaN 1 Median 0.6093 0.59863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2443200 1472300 970910 2443200 1472300 970910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12085 157 12577 61400 61705;61706 61705 2 GPTPFNQNQLHQLR PLDGADPQALGQQNRGPTPFNQNQLHQLRA RGPTPFNQNQLHQLRAQIMAYKMLARGQPL R G P L R A 0 1 2 0 0 3 0 1 1 0 2 0 0 1 2 0 1 0 0 0 0 0 14 0 1648.8434 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGP5 P51532 168 181 SMARCA4 Transcription activator BRG1 yes no 2;3 1.3853E-08 162.88 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 0.81028 0.79613 13.884 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70239 0.7691 7.4118 4 2 Median 0.99921 0.87222 19.415 4 0 Median 0.79063 0.81284 19.777 2 0 Median 1.0267 0.84371 8.4652 2 0 Median 272980000 157230000 115750000 0 0 0 0 0 0 217790000 127490000 90301000 26418000 13006000 13413000 23261000 13964000 9297000 5511800 2776700 2735100 12086 366 12578 61401;61402;61403;61404;61405;61406;61407;61408;61409;61410;61411;61412 61707;61708;61709;61710;61711;61712;61713;61714;61715;61716;61717;61718;61719;61720;61721;61722 61717 16 GPTQPPPPHVSIK PLTAFLEPQNGFLHRGPTQPPPPHVSIKLE HRGPTQPPPPHVSIKLEPASSFAVDFNEPL R G P I K L 0 0 0 0 0 1 0 1 1 1 0 1 0 0 5 1 1 0 0 1 0 0 13 0 1353.7405 Q92766 Q92766 873 885 RREB1 Ras-responsive element-binding protein 1 yes yes 3 0.013056 37.998 By MS/MS 1 0.41252 0.45863 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41252 0.45863 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1899500 1295800 603680 0 0 0 0 0 0 1899500 1295800 603680 0 0 0 0 0 0 0 0 0 12087 3554 12579 61413 61723 61723 1 GPTSTSIDNIDGTPVRDER GSSAPSESHPSDFQRGPTSTSIDNIDGTPV TSIDNIDGTPVRDERSGTPTQDEMMDKPTS R G P E R S 0 2 1 3 0 0 1 2 0 2 0 0 0 0 2 2 3 0 0 1 0 0 19 1 2028.9712 Q5VT52 Q5VT52 711 729 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 9.0345E-19 117.18 By matching By MS/MS By MS/MS 1 4 1 0.74679 0.84528 13.499 6 Median NaN NaN NaN 0 0 Median 0.74717 0.75452 NaN 1 0 Median 0.70877 0.84528 14.236 4 2 Median 1.0618 0.96148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41416000 24662000 16754000 0 0 0 1188500 818050 370480 38170000 22768000 15402000 2057400 1076200 981190 0 0 0 0 0 0 12088 3110 12580 61414;61415;61416;61417;61418;61419 61724;61725;61726;61727;61728;61729 61724 6 GPTSYYYMLPMK RSPLWRGGGVAHGPRGPTSYYYMLPMKVRA GPRGPTSYYYMLPMKVRALGLKVALTVKLA R G P M K V 0 0 0 0 0 0 0 1 0 0 1 1 2 0 2 1 1 0 3 0 0 0 12 0 1449.6672 K7ES61;Q9BYD3;K7ELQ0;X6RAY8;K7EJ73 K7ES61 157 168 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2 0.021112 32.32 By MS/MS By matching By matching 1 1 1 0.84382 0.82058 11.71 3 Median 0.79729 0.74234 NaN 1 0 Median 1.1047 0.93751 NaN 1 0 Median 0.84382 0.82058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10680000 5880800 4799600 8763900 4886400 3877500 609010 261810 347190 1307400 732560 574890 0 0 0 0 0 0 0 0 0 12089 1401 12581 61420;61421;61422 61730;61731 61730 2 GPTVSNIR EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV LLIDFFRGPTVSNIRLAGLEYVLHFTALNG R G P I R L 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 8 0 842.46102 Q9H7B2;Q5VXN0 Q9H7B2 169 176 RPF2 Ribosome production factor 2 homolog yes no 2 0.012836 54.205 By matching By MS/MS By MS/MS 1 2 2 0.95512 0.87445 42.409 5 Median NaN NaN NaN 0 0 Median 1.3171 1.1398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54183 0.58051 57.94 2 0 Median 1.0829 0.90262 15.491 2 0 Median 13424000 6477600 6946800 0 0 0 7932300 3286400 4645900 0 0 0 0 0 0 3794100 2308200 1485900 1698000 882950 815090 12090 3980 12582 61423;61424;61425;61426;61427 61732;61733;61734 61733 3 GPVEGYEENEEFLR FLEAADNLRLIQVPKGPVEGYEENEEFLRT KGPVEGYEENEEFLRTMHHLLLEVEVIEGT K G P L R T 0 1 1 0 0 0 5 2 0 0 1 0 0 1 1 0 0 0 1 1 0 0 14 0 1666.7475 Q9UI30;F5GX77;F5GYQ2 Q9UI30 69 82 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 7.5077E-11 169.65 By MS/MS By MS/MS By MS/MS 2 1 1 0.87608 0.87043 10.225 4 Median 0.91481 0.89485 6.7388 2 2 Median 0.87411 0.73887 NaN 1 0 Median 0.87805 0.88799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26457000 13176000 13281000 3299600 1672000 1627600 1354000 681240 672760 21804000 10823000 10981000 0 0 0 0 0 0 0 0 0 12091 1005 12583 61428;61429;61430;61431 61735;61736;61737;61738;61739 61738 5 GPVFAPPYEPLPENVK ERYPEGIKWKFLEHKGPVFAPPYEPLPENV PVFAPPYEPLPENVKFYYDGKVMKLSPKAE K G P V K F 1 0 1 0 0 0 2 1 0 0 1 1 0 1 5 0 0 0 1 2 0 0 16 0 1752.9087 P11387 P11387 224 239 TOP1 DNA topoisomerase 1 yes yes 2;3 8.1067E-10 116.55 By matching By MS/MS By MS/MS By MS/MS By matching 1 6 3 1 1 0.58913 0.55324 25.653 12 Median NaN NaN NaN 0 0 Median 0.71435 0.64488 NaN 1 0 Median 0.53659 0.56648 33.899 6 1 Median 0.64385 0.5571 15.89 3 0 Median 0.44397 0.45566 NaN 1 0 Median 0.66575 0.54941 NaN 1 0 Median 234960000 158660000 76297000 0 0 0 434070 242940 191130 210120000 143540000 66582000 14976000 8886300 6089500 7478200 4830300 2647900 1950800 1164000 786750 12092 1962 12584 61432;61433;61434;61435;61436;61437;61438;61439;61440;61441;61442;61443 61740;61741;61742;61743;61744;61745;61746;61747;61748;61749;61750;61751;61752;61753;61754;61755 61744 16 GPVGLAIDFPESK NMDGSNRTLLFSGQKGPVGLAIDFPESKLY QKGPVGLAIDFPESKLYWISSGNHTINRCN K G P S K L 1 0 0 1 0 0 1 2 0 1 1 1 0 1 2 1 0 0 0 1 0 0 13 0 1328.6976 Q07954 Q07954 1743 1755 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 6.7811E-07 104.52 By MS/MS By matching 1 1 0.75448 0.71064 47.794 2 Median 0.50641 0.50685 NaN 1 0 Median 1.1241 0.99637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9976400 5923500 4052800 9444700 5613800 3830900 531640 309700 221940 0 0 0 0 0 0 0 0 0 0 0 0 12093 2733 12585 61444;61445 61756;61757;61758 61758 3 GPVGLEGLLTTK LGAEVGISTSRIHARGPVGLEGLLTTKWLL HARGPVGLEGLLTTKWLLRGKDHVVSDFSE R G P T K W 0 0 0 0 0 0 1 3 0 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1183.6812 P54886 P54886 750 761 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 5.6046E-05 94.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 8 4 4 2 1.1839 1.0688 19.84 28 Median 0.94552 0.85939 10.741 5 1 Median 1.1896 1.0409 14.175 5 0 Median 1.2475 1.2454 16.378 8 0 Median 1.1087 0.97034 3.0696 4 0 Median 1.287 1.3448 9.9795 4 1 Median 1.2078 1.0288 3.1309 2 0 Median 197440000 91667000 105770000 37164000 18039000 19125000 24373000 10837000 13536000 120440000 55805000 64635000 7172100 3414500 3757600 6437400 2739900 3697500 1854100 831100 1023000 12094 2488 12586 61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456;61457;61458;61459;61460;61461;61462;61463;61464;61465;61466;61467;61468;61469;61470;61471;61472;61473 61759;61760;61761;61762;61763;61764;61765;61766;61767;61768;61769;61770 61763 12 GPVGTVSEAQLAR DEDRLDNAVRGPGPKGPVGTVSEAQLARRL PKGPVGTVSEAQLARRLTKVKNSRRMLSNK K G P A R R 2 1 0 0 0 1 1 2 0 0 1 0 0 0 1 1 1 0 0 2 0 0 13 0 1283.6834 Q9NZM1 Q9NZM1 168 180 MYOF Myoferlin yes yes 2 0.031533 66.595 By MS/MS 1 0.73468 0.62778 NaN 1 Median NaN NaN NaN 0 0 Median 0.73468 0.62778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4376900 2627900 1749000 0 0 0 4376900 2627900 1749000 0 0 0 0 0 0 0 0 0 0 0 0 12095 4192 12587 61474 61771 61771 0 GPVKPTGGPGGGGTQTQQQMNQLK NPVIMGLSSQNGQLRGPVKPTGGPGGGGTQ GGGGTQTQQQMNQLKNTNTINNGTQQQAQS R G P L K N 0 0 1 0 0 5 0 7 0 0 1 2 1 0 3 0 3 0 0 1 0 0 24 1 2365.1808 P26196;Q8IV96 P26196 23 46 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 3 6.0487E-24 104.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 0.75063 0.71106 20.677 7 Median 0.75063 0.71106 NaN 1 0 Median 0.76602 0.71644 NaN 1 0 Median 0.52418 0.54963 2.64 2 0 Median 0.81904 0.81868 NaN 1 0 Median 0.80144 0.85506 NaN 1 1 Median 0.576 0.51337 NaN 1 0 Median 101860000 44838000 57026000 44618000 12870000 31748000 17686000 9419800 8266600 14755000 9231100 5523900 17242000 9441200 7801200 5509200 2578400 2930800 2053200 1297600 755620 12096 2140 12588 61475;61476;61477;61478;61479;61480;61481 61772;61773;61774;61775;61776;61777;61778;61779 61777 8 GPVLEALVAR RLIILDEIHLLHDDRGPVLEALVARAIRNI LHDDRGPVLEALVARAIRNIEMTQEDVRLI R G P A R A 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1023.6077 O75643;A0A494C1A5 O75643 625 634 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00037046 81.548 By matching By matching By MS/MS By MS/MS 2 1 2 1 0.93892 0.90937 16.496 6 Median 1.0096 1.0074 33.582 2 0 Median 1.1223 0.96787 NaN 1 0 Median 0.79999 0.86813 1.4377 2 0 Median 1.0712 0.94292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16012000 8252500 7759400 6987100 3516300 3470800 2812300 1308800 1503400 5516000 3142400 2373700 696500 284930 411570 0 0 0 0 0 0 12097 1688 12589 61482;61483;61484;61485;61486;61487 61780;61781;61782 61780 3 GPVLQLHDLKR EFQWLREETGQVLERGPVLQLHDLKREAGG VLERGPVLQLHDLKREAGGGYRCVASVPSI R G P K R E 0 1 0 1 0 1 0 1 1 0 3 1 0 0 1 0 0 0 0 1 0 0 11 1 1274.7459 P43121 P43121 389 399 MCAM Cell surface glycoprotein MUC18 yes yes 3 3.3994E-05 110.38 By MS/MS By MS/MS 1 2 1.1587 1.0884 13.406 3 Median 0.99965 1.0406 NaN 1 0 Median 1.2956 1.2068 14.595 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11184000 4943100 6240900 5934600 2726700 3207900 5249400 2216400 3033000 0 0 0 0 0 0 0 0 0 0 0 0 12098 2322 12590 61488;61489;61490 61783;61784;61785 61783 2 GPVLWEAR LALQLVMRYWEPIPKGPVLWEARAEPWATW YWEPIPKGPVLWEARAEPWATWVPLLCFVL K G P A R A 1 1 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 8 0 926.4974 Q8IXM6;H0Y6T6 Q8IXM6 122 129 NRM Nurim yes no 2 0.0048619 79.116 By MS/MS 1 0.70232 0.67486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70232 0.67486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9566600 4901500 4665200 0 0 0 0 0 0 9566600 4901500 4665200 0 0 0 0 0 0 0 0 0 12099 3335 12591 61491 61786;61787 61787 2 GPVPAKPTVLFEK SLLAQLGITPLPLSRGPVPAKPTVLFEKMG SRGPVPAKPTVLFEKMGVGRLDMYVLHPPS R G P E K M 1 0 0 0 0 0 1 1 0 0 1 2 0 1 3 0 1 0 0 2 0 0 13 1 1381.7969 Q66K74 Q66K74 375 387 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 0.00029681 62.162 By matching By MS/MS By MS/MS By matching 1 2 5 2 0.7659 0.75724 27.107 10 Median NaN NaN NaN 0 0 Median 0.79076 0.74654 NaN 1 0 Median 0.79197 0.91111 21.677 2 0 Median 0.76338 0.70487 26.046 5 0 Median NaN NaN NaN 0 0 Median 0.85377 0.7684 42.75 2 0 Median 25784000 15934000 9849600 0 0 0 656440 376890 279550 12990000 8062700 4927500 10940000 6875500 4064200 0 0 0 1197700 619280 578400 12100 3121 12592 61492;61493;61494;61495;61496;61497;61498;61499;61500;61501 61788;61789;61790;61791 61790 4 GPVSGTEPEPVYSMEAADYR VYEDAASFKAELSYRGPVSGTEPEPVYSME TEPEPVYSMEAADYREASSQQGLAYATEAV R G P Y R E 2 1 0 1 0 0 3 2 0 0 0 0 1 0 3 2 1 0 2 2 0 0 20 0 2153.9575 Q14247;H0YEV2;H0YCD9 Q14247 435 454 CTTN Src substrate cortactin yes no 2 1.0601E-05 48.625 By MS/MS By matching 2 1 0.95064 0.9282 29.557 3 Plateau 0.92784 0.90357 15.911 2 0 Median 0.62459 0.56281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8235200 4013100 4222000 7943500 3824200 4119300 291700 188950 102750 0 0 0 0 0 0 0 0 0 0 0 0 12101 2868 12593 61502;61503;61504 61792 61792 1 GPVSLQEAIR VRLQELKALLLEAQKGPVSLQEAIREQASS LEAQKGPVSLQEAIREQASSYSRQQRDLHN K G P I R E 1 1 0 0 0 1 1 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 10 0 1068.5928 Q96ER9 Q96ER9 240 249 CCDC51 Coiled-coil domain-containing protein 51 yes yes 2 0.0014432 103.56 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12102 3640 12594 61505 61793 61793 1 GPVSPLVR PVVPTRIPAIVSLSRGPVSPLVRFQLPNVL AIVSLSRGPVSPLVRFQLPNVLFAYAHTLA R G P V R F 0 1 0 0 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 2 0 0 8 0 823.49159 Q9UHR6 Q9UHR6 205 212 ZNHIT2 Zinc finger HIT domain-containing protein 2 yes yes 2 0.047859 35.201 By MS/MS By matching By matching 1 1 1 0.74977 0.59945 140.17 3 Median 0.13387 0.12968 NaN 1 0 Median 0.74977 0.59945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.283 2.1312 NaN 1 0 Median 69880000 55169000 14711000 37098000 33613000 3484800 31103000 21247000 9855300 0 0 0 0 0 0 0 0 0 1679400 308690 1370700 12103 4282 12595 61506;61507;61508 61794 61794 1 GPVSPSVSFQPLAR STHTAGATSSLTPSRGPVSPSVSFQPLARS RGPVSPSVSFQPLARSTPRASRLPGPTGSV R G P A R S 1 1 0 0 0 1 0 1 0 0 1 0 0 1 3 3 0 0 0 2 0 0 14 0 1440.7725 Q7Z434 Q7Z434 219 232 MAVS Mitochondrial antiviral-signaling protein yes yes 2 6.0764E-08 157.95 By MS/MS By matching By matching 2 2 1 0.5848 0.5309 11.46 4 Median 0.539 0.52475 10.21 2 0 Median 0.63889 0.55884 15.816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15827000 10239000 5588300 12781000 8579400 4201700 1685000 1068000 617000 1360900 591320 769580 0 0 0 0 0 0 0 0 0 12104 3244 12596 61509;61510;61511;61512;61513 61795;61796;61797 61795 3 GPVTPGGLPPR RGQVQMSDPRAPIPRGPVTPGGLPPRGLLG PIPRGPVTPGGLPPRGLLGDAPNDPRGGTL R G P P R G 0 1 0 0 0 0 0 3 0 0 1 0 0 0 4 0 1 0 0 1 0 0 11 0 1046.5873 Q9H0L4 Q9H0L4 317 327 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 7.4096E-08 131.06 By MS/MS 1 0.47543 0.50439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47543 0.50439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3160400 1983400 1176900 0 0 0 0 0 0 3160400 1983400 1176900 0 0 0 0 0 0 0 0 0 12105 3927 12597 61514 61798 61798 1 GPVYGMNR SQYLLRPAANVTPTKGPVYGMNRLPPQQHI ANVTPTKGPVYGMNRLPPQQHIYAYPQQMH K G P N R L 0 1 1 0 0 0 0 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 8 0 892.42252 P49792 P49792 900 907 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.017303 48.761 By matching By MS/MS 1 2 0.76972 0.85792 22.761 3 Median NaN NaN NaN 0 0 Median 1.4207 1.2433 NaN 1 0 Median 0.75093 0.83971 3.0339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3054600 1643300 1411400 0 0 0 737110 328110 409000 2317500 1315200 1002300 0 0 0 0 0 0 0 0 0 12106 2401 12598 61515;61516;61517 61799 61799 1 GPVYIGELPQDFLR ______________________________ RGPVYIGELPQDFLRITPTQQQRQVQLDAQ R G P L R I 0 1 0 1 0 1 1 2 0 1 2 0 0 1 2 0 0 0 1 1 0 0 14 0 1602.8406 Q9H0E2;F2Z2Y8;E9PNS3 Q9H0E2 10 23 TOLLIP Toll-interacting protein yes no 2 1.127E-05 85.377 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.0034 0.84529 49.261 7 Median 0.83207 0.78113 6.184 2 0 Median 1.0156 0.86312 73.181 3 2 Median 0.85575 0.84529 NaN 1 1 Median 1.0116 0.84874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18163000 8854400 9309000 7251600 4022200 3229500 6903000 2693100 4209900 3344000 1861100 1482800 664830 278050 386780 0 0 0 0 0 0 12107 3925 12599 61518;61519;61520;61521;61522;61523;61524;61525 61800;61801;61802;61803;61804;61805;61806;61807 61804 8 GPYESGSGHSSGLGHR SYGPYRSGSGWSSSRGPYESGSGHSSGLGH PYESGSGHSSGLGHRESRSGQSSGYGQHGS R G P H R E 0 1 0 0 0 0 1 5 2 0 1 0 0 0 1 4 0 0 1 0 0 0 16 0 1583.7077 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1038 1053 HRNR Hornerin yes no 3 0.00042643 53.001 By MS/MS By MS/MS By MS/MS 5 4 2 0.042138 0.036673 55.411 7 Median NaN NaN NaN 0 0 Median 0.053882 0.047359 80.186 3 3 Median NaN NaN NaN 0 0 Median 0.045737 0.038787 12.179 2 2 Median NaN NaN NaN 0 0 Median 0.028813 0.02456 56.698 2 2 Median 9508200 9323200 184970 0 0 0 3438300 3333100 105260 0 0 0 2741000 2709600 31351 0 0 0 3328800 3280500 48363 + 12108 790 12600 61526;61527;61528;61529;61530;61531;61532;61533;61534;61535;61536 61808;61809;61810;61811;61812;61813;61814;61815;61816;61817;61818 61817 11 GQAAVQQLQAEGLSPR LFSGDVVLTARDVTRGQAAVQQLQAEGLSP QAAVQQLQAEGLSPRFHQLDIDDLQSIRAL R G Q P R F 3 1 0 0 0 4 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 16 0 1651.8642 O75828;P16152;E9PQ63;A8MTM1 P16152 43 58 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 no no 2;3 6.1303E-36 208.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 5 3 1 1.0244 0.90041 13.186 20 Median 0.89425 0.83549 19.069 5 0 Median 1.1452 0.95313 8.5494 6 0 Median 0.93528 0.88653 6.8382 5 2 Median 1.0722 0.88796 1.1255 3 0 Median 0.90552 0.89638 NaN 1 0 Median NaN NaN NaN 0 0 Median 238400000 121100000 117290000 171170000 88013000 83160000 26642000 12124000 14518000 34665000 17988000 16677000 2335900 1103400 1232500 3582200 1874000 1708200 0 0 0 12109 2025;1699 12601 61537;61538;61539;61540;61541;61542;61543;61544;61545;61546;61547;61548;61549;61550;61551;61552;61553;61554;61555;61556 61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839;61840;61841;61842;61843;61844;61845;61846 61821 28 GQAFVIFK GQILDILVSRSLKMRGQAFVIFKEVSSATN SRSLKMRGQAFVIFKEVSSATNALRSMQGF R G Q F K E 1 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 908.51199 P09012;M0R268;M0R221;M0R2B8;M0QZG7;M0QXK2;M0R0G9;P08579 P09012 53 60 SNRPA;SNRPB2 U1 small nuclear ribonucleoprotein A;U2 small nuclear ribonucleoprotein B no no 2 0.0094539 60.788 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 5 3 2 4 1 1.1849 1.1242 15.195 18 Median 1.1835 1.1149 7.7489 3 0 Median 1.4367 1.2141 14.809 5 0 Median 1.1414 1.0818 3.3628 3 0 Median 1.3534 1.1165 5.2856 2 0 Median 1.0148 1.0056 23.904 4 0 Median 1.432 1.2345 NaN 1 0 Median 184080000 85605000 98475000 16363000 7517600 8845700 4115600 1801500 2314200 104650000 49813000 54836000 14488000 6228700 8259200 44371000 20207000 24165000 92452 37362 55090 12110 1910;1904 12602 61557;61558;61559;61560;61561;61562;61563;61564;61565;61566;61567;61568;61569;61570;61571;61572;61573;61574 61847;61848;61849;61850;61851;61852;61853;61854;61855;61856;61857;61858;61859;61860 61856 14 GQAGFFSTPGGASR GEEGVGGAGGRDHLRGQAGFFSTPGGASRD RGQAGFFSTPGGASRDGSGPGEEGKQRTLT R G Q S R D 2 1 0 0 0 1 0 4 0 0 0 0 0 2 1 2 1 0 0 0 0 0 14 0 1338.6317 Q8IYI6 Q8IYI6 135 148 EXOC8 Exocyst complex component 8 yes yes 2 0.0003072 73.781 By MS/MS By matching 1 1 0.95039 0.87614 17.099 2 Median 0.80866 0.77636 NaN 1 0 Median 1.117 0.98874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5801800 3426700 2375100 4567600 2891400 1676100 1234200 535260 698990 0 0 0 0 0 0 0 0 0 0 0 0 12111 3343 12603 61575;61576 61861;61862 61861 2 GQATDIAIQAEEIMK PNSRIMIHQPSGGARGQATDIAIQAEEIMK GQATDIAIQAEEIMKLKKQLYNIYAKHTKQ R G Q M K L 3 0 0 1 0 2 2 1 0 3 0 1 1 0 0 0 1 0 0 0 0 0 15 0 1616.808 Q16740;M0R208 Q16740 186 200 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial;ATP-dependent Clp protease proteolytic subunit yes no 2 1.0674E-07 143.17 By MS/MS By matching By matching By matching 1 1 1 1 0.9736 0.84538 16.926 4 Median 1.0151 0.93795 NaN 1 0 Median 1.2813 1.0742 NaN 1 0 Median 0.67528 0.76194 NaN 1 0 Median 0.93379 0.75979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54225000 25548000 28677000 45294000 21680000 23613000 7819600 3250900 4568700 890140 490330 399810 221510 126330 95181 0 0 0 0 0 0 12112 2995 12604 61577;61578;61579;61580 61863;61864 61864 2 GQAVDYEGSR RFDVSGYPTIKILKKGQAVDYEGSRTQEEI KILKKGQAVDYEGSRTQEEIVAKVREVSQP K G Q S R T 1 1 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 0 1 1 0 0 10 0 1080.4836 P13667;A0A499FI48 P13667 146 155 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00041856 75.378 By MS/MS By MS/MS 1 2 1.5089 1.3016 19.938 3 Median 0.97972 0.97519 NaN 1 0 Median 1.563 1.3641 6.6325 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3448900 1404100 2044800 894870 424680 470200 2554100 979450 1574600 0 0 0 0 0 0 0 0 0 0 0 0 12113 1993 12605 61581;61582;61583 61865;61866;61867 61866 3 GQAVTLLPFFTSLTGGSLEELRR YISLLADTKLDLHLKGQAVTLLPFFTSLTG FFTSLTGGSLEELRRVLEQLIVAHFPMQSR K G Q R R V 1 2 0 0 0 1 2 3 0 0 5 0 0 2 1 2 3 0 0 1 0 0 23 1 2491.3435 P78527 P78527 1690 1712 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.052507 7.1933 By MS/MS By MS/MS By matching 1 2 1 0.91442 0.91548 36.188 4 Median 0.66013 0.70595 NaN 1 0 Median 1.295 1.2599 8.4041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6005 0.65245 NaN 1 0 Median NaN NaN NaN 0 0 Median 13694000 5985300 7708700 588640 347960 240680 12474000 5261000 7212700 0 0 0 0 0 0 631680 376370 255320 0 0 0 12114 2647 12606 61584;61585;61586;61587 61868;61869;61870 61870 3 GQDEASAGGIWGFIK AITFPEEQEDPRITRGQDEASAGGIWGFIK GQDEASAGGIWGFIKGVAGNPMVKSVLDKT R G Q I K G 2 0 0 1 0 1 1 4 0 2 0 1 0 1 0 1 0 1 0 0 0 0 15 0 1534.7416 Q96M27 Q96M27 204 218 PRRC1 Protein PRRC1 yes yes 2 0.00034921 64.82 By MS/MS By MS/MS 1 2 1.2091 1.0569 7.6249 3 Median 1.1322 1.0569 NaN 1 0 Median 1.285 1.107 10.099 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12932000 6094100 6838100 8636500 4038900 4597600 4295700 2055200 2240500 0 0 0 0 0 0 0 0 0 0 0 0 12115 3703 12607 61588;61589;61590 61871;61872;61873 61871 3 GQDIEYIEIR EINKIIRDLWRSTYRGQDIEYIEIRSDADE RSTYRGQDIEYIEIRSDADENVSASDKRRN R G Q I R S 0 1 0 1 0 1 2 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1234.6194 Q92878;A0A1W2PQ90;A0A494BZX8;H7C0V2 Q92878 1157 1166 RAD50 DNA repair protein RAD50 yes no 2 0.00034968 122.13 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 2 1.0965 1.0102 10.966 7 Median 0.92485 0.86806 NaN 1 0 Median 1.0965 0.93979 NaN 1 0 Median 0.91926 1.0102 NaN 1 0 Median 1.2991 1.1342 6.9191 2 0 Median NaN NaN NaN 0 0 Median 1.1545 1.0215 11.059 2 0 Median 66528000 32752000 33776000 13365000 6727000 6638100 2036200 978290 1057900 44557000 22319000 22237000 5207600 2076500 3131100 0 0 0 1362500 651260 711230 12116 3561 12608 61591;61592;61593;61594;61595;61596;61597 61874;61875;61876;61877;61878;61879 61878 6 GQDLLALIVAQHR GVLLFPVDDKESRNKGQDLLALIVAQHRDR NKGQDLLALIVAQHRDRSNVLSGIKMAALE K G Q H R D 2 1 0 1 0 2 0 1 1 1 3 0 0 0 0 0 0 0 0 1 0 0 13 0 1432.815 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 794 806 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.0033425 60.518 By MS/MS 1 0.82541 0.88284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82541 0.88284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2316000 1434700 881270 0 0 0 0 0 0 2316000 1434700 881270 0 0 0 0 0 0 0 0 0 12117 3293 12609 61598 61880 61880 1 GQDSEQPQAQLQPEAQLHAPAQPQPQLQLQLQSHK KPGSMQPRHLKSPVRGQDSEQPQAQLQPEA AQPQPQLQLQLQSHKGFLEQEGSPLSLGQS R G Q H K G 4 0 0 1 0 12 2 1 2 0 5 1 0 0 5 2 0 0 0 0 0 0 35 0 3895.9565 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1181 1215 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 4 0.0018834 24.62 By MS/MS 1 0.31497 0.35097 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31497 0.35097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4183200 3351700 831510 0 0 0 0 0 0 4183200 3351700 831510 0 0 0 0 0 0 0 0 0 12118 1065 12610 61599 61881 61881 1 GQEDAILSYEPVTR KGVTSNTSDSESSSKGQEDAILSYEPVTRQ KGQEDAILSYEPVTRQEIHYARPVIILGPM K G Q T R Q 1 1 0 1 0 1 2 1 0 1 1 0 0 0 1 1 1 0 1 1 0 0 14 0 1576.7733 Q5JUW8;Q92796 Q5JUW8 640 653 DLG3 Disks large homolog 3 yes no 2 0.00027173 76.655 By MS/MS By MS/MS 1 1 0.93154 0.86256 43.036 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64527 0.63625 NaN 1 1 Median 1.3448 1.1694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15167000 9107000 6059900 0 0 0 0 0 0 11910000 7910200 3999800 3256900 1196900 2060100 0 0 0 0 0 0 12119 3056 12611 61600;61601 61882;61883 61882 2 GQELAFPLSPDWQVDYESYTWR GTNNSSSISGVWVFRGQELAFPLSPDWQVD LSPDWQVDYESYTWRKLDPGSEETQTLVRE R G Q W R K 1 1 0 2 0 2 2 1 0 0 2 0 0 1 2 2 1 2 2 1 0 0 22 0 2686.234 P26641 P26641 379 400 EEF1G Elongation factor 1-gamma yes yes 2;3 2.6979E-26 136.96 By MS/MS By MS/MS 2 2 0.95166 0.93411 10.121 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93221 0.91059 3.4185 2 0 Median 0.88277 0.76896 3.1386 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63345000 32000000 31344000 0 0 0 0 0 0 60047000 30390000 29657000 3298100 1610500 1687500 0 0 0 0 0 0 12120 2149 12612 61602;61603;61604;61605 61884;61885;61886;61887;61888;61889;61890;61891 61886 8 GQELIYAGMPITEVFK IRKPASFMTSICDERGQELIYAGMPITEVF QELIYAGMPITEVFKEEMGIGGVLGLLWFQ R G Q F K E 1 0 0 0 0 1 2 2 0 2 1 1 1 1 1 0 1 0 1 1 0 0 16 0 1794.9226 P53396 P53396 849 864 ACLY ATP-citrate synthase yes yes 2 0.00044515 46.706 By MS/MS By MS/MS 1 1 1.0815 0.99979 6.8103 2 Median 1.05 1.0491 NaN 1 0 Median 1.1139 0.95279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3128000 1429000 1699000 1940400 870400 1070000 1187600 558620 628960 0 0 0 0 0 0 0 0 0 0 0 0 12121 2467 12613 61606;61607 61892;61893 61892 2 GQESAGIVTSDGSSVPTFK VPHVITLGLVGLQHRGQESAGIVTSDGSSV AGIVTSDGSSVPTFKSHKGMGLVNHVFTED R G Q F K S 1 0 0 1 0 1 1 3 0 1 0 1 0 1 1 4 2 0 0 2 0 0 19 0 1865.9007 Q06203;D6RCC8;D6RE15 Q06203 44 62 PPAT Amidophosphoribosyltransferase yes no 2 9.6246E-10 79.466 By MS/MS By matching 2 1 1.0786 0.94282 5.3225 3 Median 1.0488 0.97978 6.8407 2 1 Median 1.0786 0.94282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30337000 14768000 15570000 29247000 14239000 15008000 1090600 529180 561440 0 0 0 0 0 0 0 0 0 0 0 0 12122 2722 12614 61608;61609;61610 61894;61895;61896 61894 3 GQETSTNPIASIFAWTR AAHGTVTRHYRMYQKGQETSTNPIASIFAW ETSTNPIASIFAWTRGLAHRAKLDNNKELA K G Q T R G 2 1 1 0 0 1 1 1 0 2 0 0 0 1 1 2 3 1 0 0 0 0 17 0 1877.9272 O75874 O75874 322 338 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 2 4.6453E-05 62.891 By MS/MS 1 1.0131 0.87033 NaN 1 Median NaN NaN NaN 0 0 Median 1.0131 0.87033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2265700 1216200 1049500 0 0 0 2265700 1216200 1049500 0 0 0 0 0 0 0 0 0 0 0 0 12123 1701 12615 61611 61897 61897 1 GQEVETSVTYYR ______________________________ DGKGQEVETSVTYYRLEEVAKRNSLKELWL K G Q Y R L 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 1 2 0 2 2 0 0 12 0 1430.6678 H3BUX2;A0A499FJ32;O43169;D6RFH4 H3BUX2 13 24 CYB5B Cytochrome b5 type B yes no 2 1.0404E-21 190.24 By MS/MS By MS/MS 2 1 1.2605 1.0969 8.0596 3 Median 1.1541 1.1025 11.39 2 1 Median 1.3241 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49988000 23011000 26978000 29351000 13994000 15357000 20637000 9016500 11621000 0 0 0 0 0 0 0 0 0 0 0 0 12124 476 12616 61612;61613;61614 61898;61899;61900;61901;61902 61898 5 GQFETYLR LNKLTVYTTLIDVTKGQFETYLRDCPDPCI TLIDVTKGQFETYLRDCPDPCIGW______ K G Q L R D 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 1012.4978 Q13510;A0A1B0GTP7;A0A1B0GUH5;A0A1B0GTZ5;A0A1B0GTM3;A0A1B0GUA4;A0A1B0GW68;E7EMM4;A0A1B0GUW4;A0A1B0GUG1;A0A1B0GUE3;A0A1B0GV06 Q13510 379 386 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 2 0.0089543 79.116 By MS/MS 1 0.65795 0.65236 NaN 1 Median 0.65795 0.65236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6234400 3653900 2580500 6234400 3653900 2580500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12125 319 12617 61615 61903 61903 1 GQFSEVYR YNTLANFRIEKKIGRGQFSEVYRAACLLDG IEKKIGRGQFSEVYRAACLLDGVPVALKKV R G Q Y R A 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 8 0 984.46649 Q8TDX7;F5H3U7;F8WAG2 Q8TDX7 43 50 NEK7 Serine/threonine-protein kinase Nek7 yes no 2 0.01208 55.676 By matching By matching By MS/MS 1 1 1 1.0317 0.98712 13.176 3 Median 1.0317 0.98712 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72037 0.79548 NaN 1 0 Median 1.2064 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7182900 3576700 3606200 3447800 1483900 1963900 0 0 0 2625800 1582000 1043900 1109200 510840 598370 0 0 0 0 0 0 12126 3474 12618 61616;61617;61618 61904 61904 1 GQFSTDELVAEVEK DCSEDVIKNLILVVRGQFSTDELVAEVEKR RGQFSTDELVAEVEKRNRLKLLLPWLEARI R G Q E K R 1 0 0 1 0 1 3 1 0 0 1 1 0 1 0 1 1 0 0 2 0 0 14 0 1550.7464 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 842 855 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 1.8827E-08 119.45 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 1 1 1.311 1.2291 15.411 11 Median 1.311 1.3157 8.2737 3 0 Median 1.4458 1.2608 6.5115 3 1 Median 0.87337 0.94736 9.0758 3 2 Median 1.3547 1.2291 NaN 1 0 Median 1.3771 1.4526 NaN 1 0 Median NaN NaN NaN 0 0 Median 128010000 54474000 73535000 67832000 28595000 39237000 38667000 16710000 21957000 17120000 7246300 9873900 1642000 690950 951070 2747500 1231400 1516100 0 0 0 12127 44 12619 61619;61620;61621;61622;61623;61624;61625;61626;61627;61628;61629 61905;61906;61907;61908;61909;61910;61911;61912;61913 61907 9 GQFSTDELVAEVEKR DCSEDVIKNLILVVRGQFSTDELVAEVEKR GQFSTDELVAEVEKRNRLKLLLPWLEARIH R G Q K R N 1 1 0 1 0 1 3 1 0 0 1 1 0 1 0 1 1 0 0 2 0 0 15 1 1706.8475 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 842 856 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 3.9664E-10 165.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 3 2 1.2143 1.1801 13.826 21 Median 1.2201 1.2187 14.476 6 0 Median 1.2564 1.1871 16.46 5 0 Median 0.95636 1.1264 10.973 5 2 Median 1.5691 1.3518 6.6121 3 0 Plateau 0.99081 1.1211 7.2122 2 0 Median NaN NaN NaN 0 0 Median 249950000 109530000 140420000 157400000 67123000 90277000 33220000 13624000 19596000 50107000 25039000 25068000 2439600 961830 1477800 6781800 2785000 3996800 0 0 0 12128 44 12620 61630;61631;61632;61633;61634;61635;61636;61637;61638;61639;61640;61641;61642;61643;61644;61645;61646;61647;61648;61649;61650 61914;61915;61916;61917;61918;61919;61920;61921;61922;61923;61924;61925;61926;61927;61928;61929;61930;61931;61932;61933;61934;61935 61916 22 GQGATAAQQGGYEIPAR FPNEEEEDPSNGLSRGQGATAAQQGGYEIP GATAAQQGGYEIPARLRTLHNLVIQYAAQG R G Q A R L 4 1 0 0 0 3 1 4 0 1 0 0 0 0 1 0 1 0 1 0 0 0 17 0 1673.8121 Q9NSK0;C9J8T5;C9JZE5 Q9NSK0 194 210 KLC4 Kinesin light chain 4 yes no 2 8.6688E-12 132.59 By MS/MS By MS/MS 1 1 0.83732 0.76808 16.926 2 Median 0.70263 0.68144 NaN 1 0 Median 0.99783 0.86573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8399900 4356900 4043000 5424600 3046600 2378100 2975300 1310400 1664900 0 0 0 0 0 0 0 0 0 0 0 0 12129 4105 12621 61651;61652 61936;61937 61936 2 GQGLWVTLK TVINKVIAAKEVNHKGQGLWVTLKLLPGDI KEVNHKGQGLWVTLKLLPGDIHQIRKEFPH K G Q L K L 0 0 0 0 0 1 0 2 0 0 2 1 0 0 0 0 1 1 0 1 0 0 9 0 1000.5706 A0A096LNH6;Q14185 A0A096LNH6 399 407 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.051048 30.736 By matching By MS/MS By matching 1 1 1 1.1608 1.1188 0.37289 3 Median 1.1608 1.1188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0091 1.1195 NaN 1 0 Median 1.2338 1.112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885100 1991700 1893400 2364800 1133900 1230900 0 0 0 1358200 793340 564880 162140 64477 97662 0 0 0 0 0 0 12130 140 12622 61653;61654;61655 61938 61938 1 GQGNWGPPGGEMTFSIPTHK PGGPGMPPGGRGRGRGQGNWGPPGGEMTFS GPPGGEMTFSIPTHKCGLVIGRGGENVKAI R G Q H K C 0 0 1 0 0 1 1 5 1 1 0 1 1 1 3 1 2 1 0 0 0 0 20 0 2096.9738 Q92945;A0A087WTP3 Q92945 416 435 KHSRP Far upstream element-binding protein 2 yes no 3 7.716E-09 64.83 By matching By MS/MS By matching By matching 1 3 1 1 0.6544 0.65593 22.48 6 Median 0.77076 0.76555 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63904 0.69403 8.5322 3 1 Median 0.68117 0.59735 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47588 0.41226 NaN 1 0 Median 31580000 19085000 12494000 1684100 1030700 653400 0 0 0 29344000 17746000 11598000 414410 225250 189160 0 0 0 136790 83408 53380 12131 3568 12623;12624 61656;61657;61658;61659;61660;61661 61939;61940;61941;61942 61939 1777 4 GQGSMDEGTADER LGVFFGLVFTWLACKGQGSMDEGTADERAP CKGQGSMDEGTADERAPLIRT_________ K G Q E R A 1 1 0 2 0 1 2 3 0 0 0 0 1 0 0 1 1 0 0 0 0 0 13 0 1351.531 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PRF6;A0A1W2PQL5 A0A1W2PPU6 420 432 SCARB2 Lysosome membrane protein 2 yes no 2 0.039215 26.043 By MS/MS 1 1.113 1.107 NaN 1 Median 1.113 1.107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 988870 474320 514550 988870 474320 514550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12132 340 12625 61662 61943 61943 1 GQGSSPVAMQK MLGQMTDQVADLRARGQGSSPVAMQKAQQV LRARGQGSSPVAMQKAQQVSQGLDVLTAKV R G Q Q K A 1 0 0 0 0 2 0 2 0 0 0 1 1 0 1 2 0 0 0 1 0 0 11 0 1088.5284 P18206 P18206 342 352 VCL Vinculin yes yes 2 0.00050272 68.371 By matching By MS/MS 1 1 0.92136 0.85558 14.963 2 Median 0.93631 0.95106 NaN 1 0 Median 0.90664 0.76968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7121300 3757300 3364000 631520 370500 261030 6489800 3386800 3103000 0 0 0 0 0 0 0 0 0 0 0 0 12133 2057 12626 61663;61664 61944;61945 61944 2 GQGSVSASVTEGQQNEQ ESVDGQWVCISDVNKGQGSVSASVTEGQQN GSVSASVTEGQQNEQ_______________ K G Q E Q - 1 0 1 0 0 4 2 3 0 0 0 0 0 0 0 3 1 0 0 2 0 0 17 0 1704.7551 P55735 P55735 306 322 SEC13 Protein SEC13 homolog yes yes 2 0.0030185 46.955 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17406000 0 0 0 0 0 14513000 0 0 0 0 0 0 0 0 2892500 0 0 0 0 0 12134 2500 12627 61665;61666;61667 61946;61947;61948;61949 61949 4 GQHEPSKPPPAGETVTGGFGAK QPLLELTPRAPGSPRGQHEPSKPPPAGETV PPPAGETVTGGFGAKKRKGSSSQAPASKKL R G Q A K K 2 0 0 0 0 1 2 5 1 0 0 2 0 1 4 1 2 0 0 1 0 0 22 1 2148.06 Q9H6F5 Q9H6F5 191 212 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3;4 1.3621E-09 58.366 By MS/MS By MS/MS 2 2 0.58401 0.57521 20.175 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58401 0.62342 15.858 2 0 Median 0.5665 0.5049 22.912 2 0 Median 36924000 23677000 13248000 0 0 0 0 0 0 0 0 0 0 0 0 24722000 16239000 8483100 12203000 7438000 4764600 12135 3974 12628 61668;61669;61670;61671 61950;61951;61952;61953;61954;61955;61956 61954 7 GQHETVIPGDLPLIQEVTTTLR PASYIHLKEAIVEGKGQHETVIPGDLPLIQ PGDLPLIQEVTTTLREWSTIWRQLYVQDNR K G Q L R E 0 1 0 1 0 2 2 2 1 2 3 0 0 0 2 0 4 0 0 2 0 0 22 0 2416.2962 A0A096LNH6;Q14185 A0A096LNH6 76 97 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 0.0088695 20.657 By matching By MS/MS 1 1 0.41627 0.4022 63.193 2 Median NaN NaN NaN 0 0 Median 0.30641 0.25726 NaN 1 0 Median 0.56552 0.62879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2234500 1454700 779830 0 0 0 1082000 743120 338930 1152500 711600 440900 0 0 0 0 0 0 0 0 0 12136 140 12629 61672;61673 61957;61958 61958 2 GQHTETLLAGSLAK IVEEIKDLMTKSDIKGQHTETLLAGSLAKA KGQHTETLLAGSLAKALCYIHRMNKEVKDN K G Q A K A 2 0 0 0 0 1 1 2 1 0 3 1 0 0 0 1 2 0 0 0 0 0 14 0 1424.7623 F5H6X0;F5GXG6;F5GX35;F5H4K7;F5GWD3;Q13889;H0YFF7 F5H6X0 85 98 GTF2H3 General transcription factor IIH subunit 3 yes no 3 0.00046969 46.964 By matching By MS/MS 1 1 1.32 1.1865 23.49 2 Median NaN NaN NaN 0 0 Median 1.6676 1.4009 NaN 1 0 Median 1.0448 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9405000 4304600 5100500 0 0 0 1071300 577510 493840 8333700 3727000 4606600 0 0 0 0 0 0 0 0 0 12137 996 12630 61674;61675 61959 61959 1 GQHVPGSPFQFTVGPLGEGGAHK VPAEMGTHTVSVKYKGQHVPGSPFQFTVGP FQFTVGPLGEGGAHKVRAGGPGLERAEAGV K G Q H K V 1 0 0 0 0 2 1 6 2 0 1 1 0 2 3 1 1 0 0 2 0 0 23 0 2303.1447 P21333;H0Y5C6;Q60FE5;Q14315 P21333 2218 2240 FLNA;FLNC Filamin-A;Filamin-C no no 3;4 5.6338E-16 65.833 By MS/MS By MS/MS By matching 4 2 1 0.76817 0.8147 17.998 7 Median 0.84252 0.82925 7.5792 4 0 Median 0.66688 0.59241 6.4192 2 0 Median 0.76817 0.85621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112010000 62809000 49197000 72454000 40600000 31853000 36579000 20746000 15832000 2974400 1462500 1511900 0 0 0 0 0 0 0 0 0 12138 2088;3120;2871 12631 61676;61677;61678;61679;61680;61681;61682 61960;61961;61962;61963;61964;61965;61966;61967;61968;61969 61962 10 GQHVTGSPFQFTVGPLGEGGAHK VPQEMGVHTVSVKYRGQHVTGSPFQFTVGP FQFTVGPLGEGGAHKVRAGGPGLERGEAGV R G Q H K V 1 0 0 0 0 2 1 6 2 0 1 1 0 2 2 1 2 0 0 2 0 0 23 0 2307.1396 O75369;E7EN95;H7C5L4 O75369 2173 2195 FLNB Filamin-B yes no 3;4 1.6888E-16 72.033 By MS/MS By MS/MS 4 1 0.8522 0.83931 15.936 5 Median 0.85574 0.85809 18.273 4 2 Median 0.8522 0.75914 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65587000 36956000 28631000 44952000 25158000 19794000 20635000 11798000 8836700 0 0 0 0 0 0 0 0 0 0 0 0 12139 1664 12632 61683;61684;61685;61686;61687 61970;61971;61972;61973;61974;61975 61972 6 GQHWLLDGFPR HVITRLMMSELENRRGQHWLLDGFPRTLGQ ENRRGQHWLLDGFPRTLGQAEALDKICEVD R G Q P R T 0 1 0 1 0 1 0 2 1 0 2 0 0 1 1 0 0 1 0 0 0 0 11 0 1324.6677 P27144;D3DQ64 P27144 82 92 AK4 Adenylate kinase 4, mitochondrial yes no 3 0.037781 19.132 By MS/MS 1 0.91517 0.86111 NaN 1 Median 0.91517 0.86111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1321600 609210 712350 1321600 609210 712350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12140 2151 12633 61688 61976;61977 61977 2 GQIEEAGWSYVGGWTGQGGSK NRVLVVHDGFEGLAKGQIEEAGWSYVGGWT GWSYVGGWTGQGGSKLGTKRTLPKKSFEQI K G Q S K L 1 0 0 0 0 2 2 7 0 1 0 1 0 0 0 2 1 2 1 1 0 0 21 0 2152.9814 A0A2R8Y891;P08237;F8VZI0;F8VP00 A0A2R8Y891 549 569 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 2.9066E-11 65.092 By MS/MS By matching 2 1 1.0776 1.0342 27.127 3 Median 1.2296 1.1986 20.866 2 0 Median NaN NaN NaN 0 0 Median 0.75502 0.80808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6155200 3167600 2987600 5117100 2612300 2504800 0 0 0 1038100 555320 482810 0 0 0 0 0 0 0 0 0 12141 390 12634 61689;61690;61691 61978;61979 61978 2 GQIEEQKEMMEK ALRHYEDFPKLWMMKGQIEEQKEMMEKARE MMKGQIEEQKEMMEKAREAYNQGLKKCPHS K G Q E K A 0 0 0 0 0 2 4 1 0 1 0 2 2 0 0 0 0 0 0 0 0 0 12 1 1478.6745 O94906 O94906 716 727 PRPF6 Pre-mRNA-processing factor 6 yes yes 2;3 0.0031725 62.303 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1157 1.1029 20.065 5 Median 1.6228 1.7107 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.9352 1.0693 3.4558 2 0 Median 1.1578 1.1029 NaN 1 0 Median 1.1157 1.2502 NaN 1 0 Median NaN NaN NaN 0 0 Median 18774000 8787000 9987400 3683200 1381800 2301400 0 0 0 9219600 5006000 4213600 1351600 485140 866450 4519900 1914000 2605900 0 0 0 12142 1735 12635 61692;61693;61694;61695;61696 61980;61981;61982;61983;61984 61984 5 GQIELTGK NGWGYNDSKFIFNKKGQIELTGKRYPLSGM KFIFNKKGQIELTGKRYPLSGMGLPTFKEW K G Q G K R 0 0 0 0 0 1 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 844.46543 O00116;A0A1B0GWA2;B8ZZ81 O00116 109 116 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.012861 54.157 By MS/MS 1 1.0171 0.87909 NaN 1 Median NaN NaN NaN 0 0 Median 1.0171 0.87909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1691900 805840 886050 0 0 0 1691900 805840 886050 0 0 0 0 0 0 0 0 0 0 0 0 12143 1439 12636 61697 61985 61985 1 GQIFPTVNGLFR RIEYVTVTPEGFRYRGQIFPTVNGLFRWFK RYRGQIFPTVNGLFRWFKDHYQDPVPGITP R G Q F R W 0 1 1 0 0 1 0 2 0 1 1 0 0 2 1 0 1 0 0 1 0 0 12 0 1347.7299 Q7KZ85 Q7KZ85 1498 1509 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.010377 56.563 By MS/MS By MS/MS 1 1 0.9183 0.76906 NaN 1 Median NaN NaN NaN 0 0 Median 0.9183 0.76906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1689600 805330 884230 0 0 0 1689600 805330 884230 0 0 0 0 0 0 0 0 0 0 0 0 12144 3213 12637 61698;61699 61986;61987 61987 2 GQIIGNFQAFDEDTGLPAHAR VISIYVSESMDRSSKGQIIGNFQAFDEDTG FQAFDEDTGLPAHARYVKLEDRDNWISVDS K G Q A R Y 3 1 1 2 0 2 1 3 1 2 1 0 0 2 1 0 1 0 0 0 0 0 21 0 2256.0923 Q14126 Q14126 407 427 DSG2 Desmoglein-2 yes yes 3 7.4021E-13 83.849 By MS/MS 1 0.91464 0.945 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91464 0.945 NaN 1 0 Median NaN NaN NaN 0 0 Median 6905600 3834300 3071300 0 0 0 0 0 0 0 0 0 0 0 0 6905600 3834300 3071300 0 0 0 12145 2855 12638 61700 61988;61989 61989 2 GQILMPNIGYGSNK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK KGQILMPNIGYGSNKKTKHMLPSGFRKFLV K G Q N K K 0 0 2 0 0 1 0 3 0 2 1 1 1 0 1 1 0 0 1 0 0 0 14 0 1490.7551 D3YTB1;F8W727;P62910 D3YTB1 51 64 RPL32 60S ribosomal protein L32 yes no 2 1.1362E-05 89.403 By MS/MS By MS/MS By matching 1 2 1 0.93712 0.86109 71.743 4 Median 1.0256 0.96541 NaN 1 0 Median 0.93921 0.86109 4.2806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26766 0.21408 NaN 1 0 Median 29875000 13156000 16718000 26069000 11236000 14833000 2879000 1357300 1521800 0 0 0 0 0 0 0 0 0 926700 563450 363260 12146 798 12639 61701;61702;61703;61704 61990;61991;61992;61993;61994;61995;61996;61997 61991 8 GQILMPNIGYGSNKK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK GQILMPNIGYGSNKKTKHMLPSGFRKFLVH K G Q K K T 0 0 2 0 0 1 0 3 0 2 1 2 1 0 1 1 0 0 1 0 0 0 15 1 1618.8501 D3YTB1;F8W727;P62910 D3YTB1 51 65 RPL32 60S ribosomal protein L32 yes no 2;3 8.6744E-05 63.894 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1066 1.0126 12.287 5 Median 0.93715 0.93493 11.282 2 0 Median 1.1313 1.0004 NaN 1 0 Median 1.1066 1.1056 NaN 1 0 Median 1.3336 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54533000 26516000 28017000 45902000 22347000 23555000 4456100 1972500 2483600 3671900 1962100 1709800 503160 234430 268720 0 0 0 0 0 0 12147 798 12640;12641 61705;61706;61707;61708;61709 61998;61999;62000;62001;62002;62003 62000 300 6 GQIPQILYYR FSTCSLSSNGTNQTRGQIPQILYYRSEFDG TNQTRGQIPQILYYRSEFDGDLQSQLLSKA R G Q Y R S 0 1 0 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 0 10 0 1249.6819 O75592;A0A499FJI4 O75592 1875 1884 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 yes no 2 0.0056857 65.252 By MS/MS 1 0.74643 0.75624 NaN 1 Median 0.74643 0.75624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2288800 1262000 1026900 2288800 1262000 1026900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12148 477 12642 61710 62004 62004 1 GQIQVILGPMFSGK INLPTVLPGSPSKTRGQIQVILGPMFSGKS RGQIQVILGPMFSGKSTELMRRVRRFQIAQ R G Q G K S 0 0 0 0 0 2 0 3 0 2 1 1 1 1 1 1 0 0 0 1 0 0 14 0 1473.8014 P04183;K7ES52;K7ERJ1;K7ERV3;K7ENW5 P04183 19 32 TK1 Thymidine kinase, cytosolic;Thymidine kinase yes no 2 0.043764 37.681 By MS/MS 1 0.12832 0.11963 NaN 1 Median 0.12832 0.11963 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9604800 8235900 1368900 9604800 8235900 1368900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12149 1847 12643 61711 62005 62005 1 GQISETLK RNILIDFTKKGFLFRGQISETLKTRGIFET KKGFLFRGQISETLKTRGIFETKFLSQIES R G Q L K T 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 874.476 P19367 P19367 770 777 HK1 Hexokinase-1 yes yes 2 0.0078694 65.252 By matching By MS/MS 1 1 1.2493 1.1733 11.758 2 Median 1.267 1.275 NaN 1 0 Median 1.2318 1.0797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5345100 2273600 3071400 1554700 654870 899800 3790400 1618800 2171600 0 0 0 0 0 0 0 0 0 0 0 0 12150 2064 12644 61712;61713 62006;62007 62006 2 GQKPTLWALLNSEYVTEEK ALEAEQVEITVGRFRGQKPTLWALLNSEYV TLWALLNSEYVTEEKKLQLVRMYRTHTRRA R G Q E K K 1 0 1 0 0 1 3 1 0 0 3 2 0 0 1 1 2 1 1 1 0 0 19 1 2205.1317 P58107;A0A075B730 P58107 2117 2135 EPPK1 Epiplakin yes no 3 2.5259E-05 45.704 By MS/MS By MS/MS 1 2 1.0742 1.0233 7.4228 3 Median 0.85551 0.92874 NaN 1 0 Median 1.0895 1.0486 3.4588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10467000 5054300 5412400 4097900 2206600 1891300 6368700 2847700 3521100 0 0 0 0 0 0 0 0 0 0 0 0 12151 2520 12645 61714;61715;61716 62008;62009;62010;62011 62011 4 GQLCELSCSTDYR KNNRDLDFTIDLDFKGQLCELSCSTDYRMR FKGQLCELSCSTDYRMR_____________ K G Q Y R M 0 1 0 1 2 1 1 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 13 0 1587.6657 E9PKG1;Q99873 E9PKG1 311 323 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 7.4802E-07 103.34 By MS/MS 1 0.96039 0.81415 NaN 1 Median NaN NaN NaN 0 0 Median 0.96039 0.81415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3980700 2180100 1800600 0 0 0 3980700 2180100 1800600 0 0 0 0 0 0 0 0 0 0 0 0 12152 947 12646 61717 62012 62012 1 GQLENAEQLFK ITYTYDLMANLAFIRGQLENAEQLFKATMS AFIRGQLENAEQLFKATMSYLLGGGMKQED R G Q F K A 1 0 1 0 0 2 2 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1275.6459 Q6DKK2 Q6DKK2 150 160 TTC19 Tetratricopeptide repeat protein 19, mitochondrial yes yes 2 0.00018718 76.827 By MS/MS By matching 1 1 2.2481 2.1314 33.06 2 Median 1.8189 1.6871 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.7785 2.6927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11359000 3555600 7802900 9879000 3260800 6618300 0 0 0 1479500 294820 1184600 0 0 0 0 0 0 0 0 0 12153 3134 12647 61718;61719 62013;62014 62014 2 GQLEQITGK RPQLLKNALQRAVERGQLEQITGKGASGTF QRAVERGQLEQITGKGASGTFQLKKSGEKP R G Q G K G 0 0 0 0 0 2 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 972.52401 Q5SSJ5;X6RGJ2;B0QZK4 Q5SSJ5 312 320 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00088636 92.439 By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 0.79906 0.81149 23.61 7 Median NaN NaN NaN 0 0 Median 1.3938 1.2385 NaN 1 0 Median 0.58347 0.58803 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79253 0.74584 6.7509 3 1 Plateau 1.1142 0.91483 2.0481 2 0 Median 64523000 33750000 30773000 0 0 0 1522800 599060 923760 13856000 8343400 5512400 0 0 0 37276000 19418000 17858000 11868000 5389500 6478700 12154 3075 12648 61720;61721;61722;61723;61724;61725;61726 62015;62016;62017;62018;62019;62020 62017 6 GQLESIVENIR GRGGSMLGTKRTLPKGQLESIVENIRIYGI TLPKGQLESIVENIRIYGIHALLVVGGFEA K G Q I R I 0 1 1 0 0 1 2 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1256.6725 P17858 P17858 475 485 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.00075693 87.913 By MS/MS 1 0.87741 0.83034 NaN 1 Median 0.87741 0.83034 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8251200 4418400 3832800 8251200 4418400 3832800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12155 2047 12649 61727 62021 62021 1 GQLGDVGALDTVWR PERLRQLQQELEAFRGQLGDVGALDTVWRE RGQLGDVGALDTVWRELQDAQEHDARGRSI R G Q W R E 1 1 0 2 0 1 0 3 0 0 2 0 0 0 0 0 1 1 0 2 0 0 14 0 1485.7576 Q9H3S7 Q9H3S7 1183 1196 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 yes yes 2 0.00018717 78.653 By MS/MS 1 1.1199 1.0838 NaN 1 Median 1.1199 1.0838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3928600 2102600 1826000 3928600 2102600 1826000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12156 3958 12650 61728 62022;62023 62022 2 GQLLALTIQHEKPDLEEQK IVTEVNFTTTRSGLRGQLLALTIQHEKPDL ALTIQHEKPDLEEQKTKLLQQEEDKKIQLA R G Q Q K T 1 0 0 1 0 3 3 1 1 1 4 2 0 0 1 0 1 0 0 0 0 0 19 1 2189.1692 Q8NCM8 Q8NCM8 3401 3419 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.002117 41.257 By MS/MS 1 0.68684 0.74795 NaN 1 Median 0.68684 0.74795 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17903000 8726100 9177200 17903000 8726100 9177200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12157 3418 12651 61729 62024 62024 1 GQLLIFGATNWDLIGR EHTKERVKLEGSKCKGQLLIFGATNWDLIG QLLIFGATNWDLIGRKEVPKQQAAYRNLGQ K G Q G R K 1 1 1 1 0 1 0 3 0 2 3 0 0 1 0 0 1 1 0 0 0 0 16 0 1772.9574 Q9P258 Q9P258 104 119 RCC2 Protein RCC2 yes yes 2 0.00059425 44.765 By matching By MS/MS 2 2 0.99819 0.95702 21.123 4 Median NaN NaN NaN 0 0 Median 0.901 0.7967 14.872 2 0 Median 1.0932 1.1003 8.6683 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2922800 1465600 1457200 0 0 0 1399200 681920 717290 1523600 783680 739920 0 0 0 0 0 0 0 0 0 12158 4214 12652 61730;61731;61732;61733 62025 62025 1 GQLLPVSK LEAQAATGGLVDLARGQLLPVSKALQQGLV GLVDLARGQLLPVSKALQQGLVGLELKEKL R G Q S K A 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 8 0 840.5069 P58107;A0A075B730 P58107 90 97 EPPK1 Epiplakin yes no 2 0.012771 73.26 By MS/MS 1 0.30822 0.27498 NaN 1 Median NaN NaN NaN 0 0 Median 0.30822 0.27498 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28256000 22966000 5290100 0 0 0 28256000 22966000 5290100 0 0 0 0 0 0 0 0 0 0 0 0 12159 2520 12653 61734 62026 62026 1 GQLNADEISLRPAQSFLMNK LQGQSKDMPPRFSKKGQLNADEISLRPAQS DEISLRPAQSFLMNKNQVPKLQPQITMIPP K G Q N K N 2 1 2 1 0 2 1 1 0 1 3 1 1 1 1 2 0 0 0 0 0 0 20 1 2231.1369 P78344;D3DQV9 P78344 465 484 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.068677 7.9934 By MS/MS By matching 1 1 0.64489 0.65864 31.407 2 Median 0.79181 0.82242 NaN 1 0 Median 0.52523 0.52747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3406900 1958600 1448300 2737000 1512100 1224900 669910 446500 223410 0 0 0 0 0 0 0 0 0 0 0 0 12160 2639 12654 61735;61736 62027 62027 1 GQLPDYTSPVVLPYSR IWDYLKLVRIYTKPKGQLPDYTSPVVLPYS QLPDYTSPVVLPYSRTTVEDFCMKIHKNLI K G Q S R T 0 1 0 1 0 1 0 1 0 0 2 0 0 0 3 2 1 0 2 2 0 0 16 0 1790.9203 Q9Y295;H0YI06 Q9Y295 300 315 DRG1 Developmentally-regulated GTP-binding protein 1 yes no 2 7.9429E-08 92.925 By MS/MS By MS/MS 1 1 0.78083 0.7325 7.6411 2 Median 0.77331 0.77316 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78842 0.69397 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24051000 14184000 9867000 22301000 13054000 9247100 0 0 0 0 0 0 1749500 1129600 619910 0 0 0 0 0 0 12161 4382 12655 61737;61738 62028;62029 62028 2 GQLQDELEKGER DDQAAWENELQKMTRGQLQDELEKGERDNA MTRGQLQDELEKGERDNAELQEFANAILQQ R G Q E R D 0 1 0 1 0 2 3 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1400.6896 X6RLX0;Q8IUD2 X6RLX0 1074 1085 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 9.9819E-05 82.362 By MS/MS 1 1.4006 1.346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4006 1.346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3541200 1391100 2150100 0 0 0 0 0 0 0 0 0 3541200 1391100 2150100 0 0 0 0 0 0 12162 3311 12656 61739 62030 62030 1 GQLQEAIEHYR LAEAYSNLGNVYKERGQLQEAIEHYRHALR YKERGQLQEAIEHYRHALRLKPDFIDGYIN R G Q Y R H 1 1 0 0 0 2 2 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1342.663 O15294;C9JZL3 O15294 103 113 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 2;3 4.4658E-05 145.17 By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 0.98571 0.9907 34.903 7 Median 0.6188 0.59885 50.753 2 1 Median 1.1294 0.96608 NaN 1 0 Median 1.0657 1.1153 9.2833 3 1 Plateau 1.2506 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45450000 24121000 21329000 15115000 10046000 5069500 2371500 1058200 1313300 24185000 11246000 12938000 3779000 1770700 2008300 0 0 0 0 0 0 12163 1537 12657 61740;61741;61742;61743;61744;61745;61746 62031;62032;62033;62034;62035;62036;62037 62037 7 GQLVPLETVLDMLR SGSARGKKLSEIMEKGQLVPLETVLDMLRD KGQLVPLETVLDMLRDAMVAKVNTSKGFLI K G Q L R D 0 1 0 1 0 1 1 1 0 0 4 0 1 0 1 0 1 0 0 2 0 0 14 0 1582.8753 Q5T9B7;P00568;H0YID2 Q5T9B7 80 93 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.00082876 58.978 By MS/MS By MS/MS 1 1 1.0435 0.93352 1.0815 2 Median 0.9837 0.92641 NaN 1 0 Median 1.107 0.94069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3151500 1498900 1652500 1548400 754770 793650 1603000 744160 858880 0 0 0 0 0 0 0 0 0 0 0 0 12164 1825 12658 61747;61748 62038;62039;62040 62039 3 GQMDQPANMPDSILLEAK ILADGTVLPTLVFYRGQMDQPANMPDSILL DQPANMPDSILLEAKESGYSDDEIMELWST R G Q A K E 2 0 1 2 0 2 1 1 0 1 2 1 2 0 2 1 0 0 0 0 0 0 18 0 1956.9285 Q7Z3K3 Q7Z3K3 1178 1195 POGZ Pogo transposable element with ZNF domain yes yes 2 0.00032731 40.066 By MS/MS 1 0.73099 0.76562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73099 0.76562 NaN 1 0 Median NaN NaN NaN 0 0 Median 6005900 3348500 2657400 0 0 0 0 0 0 0 0 0 0 0 0 6005900 3348500 2657400 0 0 0 12165 3241 12659 61749 62041 62041 1 GQMLGLGNPSFSDPFTGGGR MFLDQVAKFIIDNTKGQMLGLGNPSFSDPF LGNPSFSDPFTGGGRYVPGSSGSSNTLPTA K G Q G R Y 0 1 1 1 0 1 0 6 0 0 2 0 1 2 2 2 1 0 0 0 0 0 20 0 1993.9316 Q9Y263;E5RIM3;H0YBW4 Q9Y263 457 476 PLAA Phospholipase A-2-activating protein yes no 2 4.4474E-08 70.622 By MS/MS By matching 3 1 0.77515 0.77075 7.8538 4 Median 0.78097 0.77754 3.6618 3 1 Plateau NaN NaN NaN 0 0 Median 0.84703 0.87314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9213700 5424700 3789000 8603900 5045100 3558700 0 0 0 609840 379540 230300 0 0 0 0 0 0 0 0 0 12166 4374 12660 61750;61751;61752;61753 62042;62043;62044 62042 3 GQMQKPFEDASFALR CSSAKARGDLGAFSRGQMQKPFEDASFALR GQMQKPFEDASFALRTGEMSGPVFTDSGIH R G Q L R T 2 1 0 1 0 2 1 1 0 0 1 1 1 2 1 1 0 0 0 0 0 0 15 1 1723.8352 Q13526;K7EN45 Q13526 128 142 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 2;3 1.0535E-08 125.97 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 8 3 0.93101 0.90827 12.041 22 Median 0.88055 0.86277 19.204 6 0 Median 1.0138 0.89478 11.849 5 0 Median 0.89168 0.92651 4.2535 8 0 Median 1.0769 0.95331 5.4905 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 504420000 257100000 247330000 192740000 95411000 97332000 22878000 11380000 11498000 278980000 145380000 133600000 9819700 4924300 4895300 0 0 0 0 0 0 12167 2822 12661;12662 61754;61755;61756;61757;61758;61759;61760;61761;61762;61763;61764;61765;61766;61767;61768;61769;61770;61771;61772;61773;61774;61775 62045;62046;62047;62048;62049;62050;62051;62052;62053;62054;62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068;62069 62057 1515 25 GQMSSFLLSTANQQEISALDSK TACYDIDVEVEEPLKGQMSSFLLSTANQQE LSTANQQEISALDSKIHETIESINQLKIQR K G Q S K I 2 0 1 1 0 3 1 1 0 1 3 1 1 1 0 5 1 0 0 0 0 0 22 0 2354.1424 Q6STE5 Q6STE5 370 391 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 3 0.015831 15.506 By MS/MS By matching 1 1 1.0123 0.9616 23.999 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79042 0.81151 NaN 1 0 Median 1.2965 1.1394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1947600 874430 1073100 0 0 0 0 0 0 1784400 789640 994800 163130 84788 78338 0 0 0 0 0 0 12168 3183 12663 61776;61777 62070;62071 62071 2 GQNALVELQTQRPIALELYK STGEVTKKKPKFLTKGQNALVELQTQRPIA VELQTQRPIALELYKDFKELGRFMLRYGGS K G Q Y K D 2 1 1 0 0 3 2 1 0 1 4 1 0 0 1 0 1 0 1 1 0 0 20 1 2283.2587 B7Z524;H0YDX7;J3QT46;Q9Y450 B7Z524 474 493 HBS1L HBS1-like protein yes no 3 4.5149E-05 38.417 By matching By MS/MS By matching By matching 1 3 1 1 1.2577 1.2434 37.314 6 Median 2.1816 2.2313 NaN 1 0 Median 1.0917 1.1024 28.367 3 0 Median 0.75242 0.89357 NaN 1 0 Median 1.5546 1.4254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6290100 2784800 3505300 2381400 624570 1756800 2655000 1472900 1182100 1079200 619370 459780 174560 67888 106670 0 0 0 0 0 0 12169 632 12664 61778;61779;61780;61781;61782;61783 62072 62072 1 GQNHNVQGFHPYR PGSGGPPAGGSGFGRGQNHNVQGFHPYRR_ GRGQNHNVQGFHPYRR______________ R G Q Y R R 0 1 2 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 1 1 0 0 13 0 1552.7284 K7EQ55;K7EK33;Q96EP5 K7EQ55 393 405 DAZAP1 DAZ-associated protein 1 yes no 3 0.061507 11.976 By MS/MS By matching 1 1 0.82341 0.77136 0.94903 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77082 0.77656 NaN 1 0 Median 0.87958 0.7662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3491000 1950900 1540200 0 0 0 0 0 0 2063500 1259700 803810 1427500 691160 736360 0 0 0 0 0 0 12170 1367 12665 61784;61785 62073 62073 1 GQNLLLTNLQTIQGILER VRLSQQRESLLAEQRGQNLLLTNLQTIQGI LLLTNLQTIQGILERSETETKQRLSSQIEK R G Q E R S 0 1 2 0 0 3 1 2 0 2 5 0 0 0 0 0 2 0 0 0 0 0 18 0 2023.1426 P12270 P12270 811 828 TPR Nucleoprotein TPR yes yes 3 0.0307 13.832 By MS/MS By matching By matching By matching 2 2 1 1 1.0849 1.1025 16.034 6 Median 1.0849 1.0701 11.765 2 0 Median 1.4242 1.2522 20.517 2 0 Median 1.0055 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87171 0.90694 NaN 1 0 Median NaN NaN NaN 0 0 Median 1468700 671180 797510 648940 284790 364150 203520 90000 113520 477880 222280 255600 0 0 0 138350 74114 64238 0 0 0 12171 1978 12666 61786;61787;61788;61789;61790;61791 62074 62074 1 GQNLLQTQDHAK LKSLPDTELMKDTARGQNLLQTQDHAKAPK TARGQNLLQTQDHAKAPKSEKGKITKMPCQ R G Q A K A 1 0 1 1 0 3 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.6844 P46013 P46013 982 993 MKI67 Antigen KI-67 yes yes 3 0.04501 16.35 By MS/MS 1 1.3041 1.4332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3041 1.4332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1609400 659350 950070 0 0 0 0 0 0 1609400 659350 950070 0 0 0 0 0 0 0 0 0 12172 2335 12667 61792 62075 62075 1 GQNPNATFGEVSK SAYALFFRDTQAAIKGQNPNATFGEVSKIV IKGQNPNATFGEVSKIVASMWDSLGEEQKQ K G Q S K I 1 0 2 0 0 1 1 2 0 0 0 1 0 1 1 1 1 0 0 1 0 0 13 0 1347.6419 O94842;O15405;O94900 O94842 243 255 TOX4;TOX3;TOX TOX high mobility group box family member 4;TOX high mobility group box family member 3;Thymocyte selection-associated high mobility group box protein TOX yes no 2 3.8991E-05 90.685 By MS/MS 1 0.62531 0.68596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62531 0.68596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3169700 1728700 1441000 0 0 0 0 0 0 3169700 1728700 1441000 0 0 0 0 0 0 0 0 0 12173 1730 12668 61793 62076 62076 1 GQPAIIDGELYNEVK MVVDIQRRHLRVGLKGQPAIIDGELYNEVK GQPAIIDGELYNEVKVEESSWLIEDGKVVT K G Q V K V 1 0 1 1 0 1 2 2 0 2 1 1 0 0 1 0 0 0 1 1 0 0 15 0 1644.8359 Q9Y266 Q9Y266 213 227 NUDC Nuclear migration protein nudC yes yes 2 2.626E-06 91.961 By matching By matching By MS/MS 1 1 2 0.96599 0.85994 25.759 4 Median 0.97621 0.90216 NaN 1 0 Median 0.95587 0.81969 NaN 1 0 Median 0.7998 0.80616 43.623 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36715000 18966000 17749000 16297000 7901800 8395000 4173900 2083300 2090600 16244000 8981200 7263000 0 0 0 0 0 0 0 0 0 12174 4376 12669 61794;61795;61796;61797 62077;62078;62079;62080 62079 4 GQPDVVVKEDEEYK GKFGNEVIPVTVTVKGQPDVVVKEDEEYKR KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ K G Q Y K R 0 0 0 2 0 1 3 1 0 0 0 2 0 0 1 0 0 0 1 3 0 0 14 1 1633.7835 P24752 P24752 244 257 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 3 0.040198 17.219 By MS/MS 1 1.3933 1.265 NaN 1 Median NaN NaN NaN 0 0 Median 1.3933 1.265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1205100 542370 662740 0 0 0 1205100 542370 662740 0 0 0 0 0 0 0 0 0 0 0 0 12175 2126 12670 61798 62081 62081 1 GQPDVVVKEDEEYKR GKFGNEVIPVTVTVKGQPDVVVKEDEEYKR GQPDVVVKEDEEYKRVDFSKVPKLKTVFQK K G Q K R V 0 1 0 2 0 1 3 1 0 0 0 2 0 0 1 0 0 0 1 3 0 0 15 2 1789.8846 P24752 P24752 244 258 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2;3;4 5.8578E-05 75.764 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 0.95644 1.0129 27.088 8 Median 0.74864 0.79262 7.5093 2 0 Median 1.2502 1.4944 4.9156 2 0 Median 0.78211 0.87685 2.1876 2 0 Median 1.1888 1.1892 4.4832 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120230000 61648000 58584000 7001000 3883500 3117500 15178000 6459200 8718400 83804000 45282000 38522000 14250000 6022900 8226800 0 0 0 0 0 0 12176 2126 12671 61799;61800;61801;61802;61803;61804;61805;61806;61807 62082;62083;62084;62085;62086;62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101 62089 20 GQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYER SYAAQQHPQAAASYRGQPGNAYDGAGQPSA GAVANANSTPPPYERTRLSPPRASYDDPYK R G Q E R T 7 1 3 1 0 3 1 5 0 0 1 0 1 0 5 4 1 0 3 1 0 0 37 0 3693.6754 Q96PK6 Q96PK6 542 578 RBM14 RNA-binding protein 14 yes yes 3 1.788E-14 70.217 By MS/MS By MS/MS 1 1 0.36939 0.38641 0.52675 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36916 0.38785 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.36962 0.38497 NaN 1 1 Median NaN NaN NaN 0 0 Median 10057000 8131600 1925700 0 0 0 0 0 0 4601100 3801800 799360 0 0 0 5456200 4329800 1126400 0 0 0 12177 3712 12672 61808;61809 62102;62103;62104 62102 3 GQPIYIQFSNHK NTMVNYYTSVTPVLRGQPIYIQFSNHKELK VLRGQPIYIQFSNHKELKTDSSPNQAVRGP R G Q H K E 0 0 1 0 0 2 0 1 1 2 0 1 0 1 1 1 0 0 1 0 0 0 12 0 1430.7306 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59 A0A0U1RRM4 123 134 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2;3 1.78E-39 192.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 11 10 12 8 0.90372 0.85588 19.485 45 Median 0.89746 0.83113 15.147 3 1 Median 0.96675 0.8265 21.029 2 0 Median 0.86117 0.8072 19.942 11 0 Median 1.0106 0.85757 10.469 10 0 Median 0.8648 0.85588 21.455 11 0 Median 1.1137 0.92789 28.099 8 0 Median 1397300000 746130000 651140000 44922000 19522000 25400000 9012900 4438300 4574700 967930000 531990000 435950000 149930000 71967000 77965000 185510000 98775000 86733000 39960000 19445000 20515000 12178 312 12673 61810;61811;61812;61813;61814;61815;61816;61817;61818;61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839;61840;61841;61842;61843;61844;61845;61846;61847;61848;61849;61850;61851;61852;61853;61854;61855;61856 62105;62106;62107;62108;62109;62110;62111;62112;62113;62114;62115;62116;62117;62118;62119;62120;62121;62122;62123;62124;62125;62126;62127;62128;62129;62130;62131;62132;62133;62134;62135;62136;62137;62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150;62151;62152;62153;62154;62155 62105 51 GQPLGPAGVQVSLR FVFTGFSVNGKVLSKGQPLGPAGVQVSLRN KGQPLGPAGVQVSLRNTGTEAKIQSTVTQP K G Q L R N 1 1 0 0 0 2 0 3 0 0 2 0 0 0 2 1 0 0 0 2 0 0 14 0 1377.7728 A0A0G2JN29;A0A087X117;Q15155;J3KN36;P69849;Q5JPE7 J3KN36 139 152 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 2.7043E-05 97.911 By MS/MS By MS/MS By matching 3 1 1 0.90894 0.87715 20.958 5 Median 0.89846 0.87742 27.302 3 3 Median 1.032 0.87715 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90894 0.77943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28709000 12538000 16171000 25590000 10807000 14783000 2491400 1395600 1095800 0 0 0 627420 335470 291950 0 0 0 0 0 0 12179 117;1301 12674 61857;61858;61859;61860;61861 62156;62157;62158;62159 62158 4 GQPLPDHLQMAVQGK HQLRAQIMAYKMLARGQPLPDHLQMAVQGK GQPLPDHLQMAVQGKRPMPGMQQQMPTLPP R G Q G K R 1 0 0 1 0 3 0 2 1 0 2 1 1 0 2 0 0 0 0 1 0 0 15 0 1617.8297 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGP5 P51532 193 207 SMARCA4 Transcription activator BRG1 yes no 2;3 6.4227E-10 160.67 By MS/MS By MS/MS By matching 3 2 1 0.65942 0.72476 14.099 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66638 0.73065 6.3403 3 0 Plateau 0.98527 0.88791 2.3032 2 0 Median 0.62465 0.65359 NaN 1 0 Median NaN NaN NaN 0 0 Median 135750000 79105000 56650000 0 0 0 0 0 0 115920000 68797000 47124000 12396000 6021100 6375300 7436700 4286200 3150600 0 0 0 12180 366 12675;12676 61862;61863;61864;61865;61866;61867 62160;62161;62162;62163;62164;62165;62166;62167;62168 62166 171 9 GQPLPETLQLAVQGK HQLRAQILAYKMLARGQPLPETLQLAVQGK GQPLPETLQLAVQGKRTLPGLQQQQQQQQQ R G Q G K R 1 0 0 0 0 3 1 2 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 0 1577.8777 P51531;F6VDE0;A0A0U1RQZ9;A0A0A0MT03;A0A1B0GWA8;A0A1B0GU54 P51531 195 209 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 1.6176E-07 134.75 By MS/MS By matching By matching 1 1 1 0.88109 0.76596 9.6562 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6451 0.71096 NaN 1 0 Median 0.95185 0.86107 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88109 0.76596 NaN 1 0 Median 17955000 10724000 7230600 0 0 0 0 0 0 17333000 10394000 6939400 530010 279050 250960 0 0 0 92013 51746 40267 12181 2433 12677 61868;61869;61870 62169;62170 62170 2 GQPLPPDLLQQAK MKRIIAHAQLLEQHRGQPLPPDLLQQAKCL HRGQPLPPDLLQQAKCLGFSDKQIALAVLS R G Q A K C 1 0 0 1 0 3 0 1 0 0 3 1 0 0 3 0 0 0 0 0 0 0 13 0 1403.7773 F8VPD4;P27708 F8VPD4 792 804 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 6.8399E-07 104.42 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.69974 0.62886 7.6529 5 Median 0.67235 0.6617 12.908 2 0 Median 0.70565 0.62544 NaN 1 0 Median 0.62243 0.69061 NaN 1 0 Median 0.69974 0.62886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32405000 18037000 14369000 22903000 12581000 10322000 7741600 4362300 3379300 1508600 953360 555240 252330 140680 111640 0 0 0 0 0 0 12182 1057 12678 61871;61872;61873;61874;61875 62171;62172;62173;62174 62172 4 GQPSNKEDVDDLVSQLR MEVQVASQSSQRTGKGQPSNKEDVDDLVSQ PSNKEDVDDLVSQLRQTEEQVNDLKERLKT K G Q L R Q 0 1 1 3 0 2 1 1 0 0 2 1 0 0 1 2 0 0 0 2 0 0 17 1 1898.9334 P12270 P12270 926 942 TPR Nucleoprotein TPR yes yes 2;3 1.2392E-07 81.494 By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 0.88048 0.98801 20.61 7 Median 0.94035 0.96222 7.2628 2 0 Median 1.1172 1.0526 NaN 1 0 Median 1.2912 1.5397 28.264 3 1 Plateau 0.86584 0.80649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85392000 39692000 45700000 16559000 8561900 7997100 3393300 1700700 1692600 65000000 29257000 35743000 439460 172450 267010 0 0 0 0 0 0 12183 1978 12679 61876;61877;61878;61879;61880;61881;61882 62175;62176;62177;62178;62179;62180;62181;62182 62181 8 GQPVSTAVSAPNTVSSTPGQK VQPGAPQQVMTQIIRGQPVSTAVSAPNTVS AVSAPNTVSSTPGQKSLTSATSTSNIQSSA R G Q Q K S 2 0 1 0 0 2 0 2 0 0 0 1 0 0 3 4 3 0 0 3 0 0 21 0 2012.0174 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;J3QQK4 Q12830 2225 2245 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 4.9399E-12 81.619 By MS/MS By MS/MS 1 1 0.50132 0.50653 30.717 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37883 0.40764 NaN 1 0 Median 0.66341 0.62942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6263000 4297400 1965600 0 0 0 0 0 0 5061700 3536300 1525400 1201300 761070 440230 0 0 0 0 0 0 12184 2762 12680 61883;61884 62183;62184 62183 2 GQQELLYVVPFVAK TDLDVKSLLLEAYVKGQQELLYVVPFVAKV KGQQELLYVVPFVAKVLESSIRSVVFRPPN K G Q A K V 1 0 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 0 1 3 0 0 14 0 1589.8817 A5YKK6;H3BVC9 A5YKK6 1228 1241 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0010311 51.436 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1015 0.96453 15.428 4 Median 0.90783 0.87361 NaN 1 0 Median 1.1515 1.0183 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3668 1.2353 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0538 0.91358 NaN 1 0 Median 6909100 3295700 3613400 4065400 2045100 2020300 2141700 965330 1176400 0 0 0 498690 180590 318090 0 0 0 203270 104680 98593 12185 503 12681 61885;61886;61887;61888 62185;62186 62186 2 GQQLVMMPNK GTVVLGKLESGSICKGQQLVMMPNKHNVEV GSICKGQQLVMMPNKHNVEVLGILSDDVET K G Q N K H 0 0 1 0 0 2 0 1 0 0 1 1 2 0 1 0 0 0 0 1 0 0 10 0 1144.5733 P15170;H3BR35;Q8IYD1 P15170 329 338 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 2 0.00034189 85.212 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.9263 0.865 49.126 6 Median 1.2071 1.1466 42.157 2 0 Median 0.94692 0.81935 9.9626 2 0 Median 0.9505 0.97913 NaN 1 0 Median 0.38638 0.34237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26669000 13089000 13580000 9889900 4661600 5228300 8253500 4088100 4165300 7733600 3798400 3935200 792350 541190 251160 0 0 0 0 0 0 12186 2016 12682 61889;61890;61891;61892;61893;61894 62187;62188;62189;62190;62191;62192 62192 6 GQQYESMDHIQAELSAR ASAGFRRLITVALHRGQQYESMDHIQAELS QYESMDHIQAELSARVMELAPAGMPTQQQV R G Q A R V 2 1 0 1 0 3 2 1 1 1 1 0 1 0 0 2 0 0 1 0 0 0 17 0 1961.8901 Q8N6R0 Q8N6R0 341 357 METTL13 Methyltransferase-like protein 13 yes yes 3 0.071038 15.766 By MS/MS 1 0.79563 0.78354 NaN 1 Median 0.79563 0.78354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2289500 1489400 800130 2289500 1489400 800130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12187 3388 12683 61895 62193 62193 1 GQRPETLHER STFLFEDFSKASGFKGQRPETLHERLTLVS ASGFKGQRPETLHERLTLVSVYAPYLLIPF K G Q E R L 0 2 0 0 0 1 2 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 10 1 1221.6214 Q5BJF2;Q86XC5;J3KTD1 Q5BJF2 131 140 TMEM97 Transmembrane protein 97 yes no 3 0.066057 23.226 By MS/MS 1 1.2749 1.1663 NaN 1 Median NaN NaN NaN 0 0 Median 1.2749 1.1663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 551450 227950 323500 0 0 0 551450 227950 323500 0 0 0 0 0 0 0 0 0 0 0 0 12188 3041 12684 61896 62194 62194 1 GQSDIAITK KTPALKYQQLFEDIRGQSDIAITKDMFEEA LFEDIRGQSDIAITKDMFEEALRALADDDF R G Q T K D 1 0 0 1 0 1 0 1 0 2 0 1 0 0 0 1 1 0 0 0 0 0 9 0 931.49746 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 779 787 MCM4 DNA replication licensing factor MCM4 yes no 2 0.0058287 56.432 By MS/MS 1 1.2543 1.0742 NaN 1 Median NaN NaN NaN 0 0 Median 1.2543 1.0742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4651100 1950000 2701100 0 0 0 4651100 1950000 2701100 0 0 0 0 0 0 0 0 0 0 0 0 12189 441 12685 61897 62195;62196 62196 2 GQSEDPGSLLSLFR FPDIPGAVSANMTVKGQSEDPGSLLSLFRR KGQSEDPGSLLSLFRRLSDQRSKERSLLHG K G Q F R R 0 1 0 1 0 1 1 2 0 0 3 0 0 1 1 3 0 0 0 0 0 0 14 0 1504.7522 F5GZS6;J3KPF3;P08195;F5GZI0 F5GZS6 480 493 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 6.5451E-08 121.08 By MS/MS By MS/MS By matching By matching 2 4 1 2 0.78315 0.6809 74.824 9 Median 1.0715 1.0287 42.282 2 0 Median 0.73091 0.62347 89.109 4 1 Median 1.4175 1.4782 NaN 1 0 Median 0.7257 0.61422 14.575 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133170000 81486000 51686000 14449000 6759700 7689000 117400000 74211000 43190000 1054700 386590 668070 268530 129190 139340 0 0 0 0 0 0 12190 1016 12686 61898;61899;61900;61901;61902;61903;61904;61905;61906 62197;62198;62199;62200;62201;62202;62203 62198 7 GQSFFIDAPDSPATLAYR GRVPLDPLIGKNCDKGQSFFIDAPDSPATL FFIDAPDSPATLAYRSIIQRIQEFCNLHQS K G Q Y R S 3 1 0 2 0 1 0 1 0 1 1 0 0 2 2 2 1 0 1 0 0 0 18 0 1954.9425 P53384 P53384 280 297 NUBP1 Cytosolic Fe-S cluster assembly factor NUBP1 yes yes 2 0.044468 21.251 By MS/MS By matching 1 1 0.80211 0.73242 10.935 2 Median 0.81737 0.7913 NaN 1 0 Median 0.78714 0.67792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1499300 873690 625560 1064600 562870 501700 434680 310820 123860 0 0 0 0 0 0 0 0 0 0 0 0 12191 2466 12687 61907;61908 62204 62204 1 GQSLGYAFAEFQEHEHALK CRVMRDLKGVHGNMKGQSLGYAFAEFQEHE GYAFAEFQEHEHALKALRLINNNPEIFGPL K G Q L K A 3 0 0 0 0 2 3 2 2 0 2 1 0 2 0 1 0 0 1 0 0 0 19 0 2161.0229 Q9NW13 Q9NW13 537 555 RBM28 RNA-binding protein 28 yes yes 3 8.8783E-07 53.278 By matching By MS/MS 1 1 1.7266 1.665 7.9495 2 Median NaN NaN NaN 0 0 Median 1.9502 1.7613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5287 1.574 NaN 1 0 Median NaN NaN NaN 0 0 Median 6293900 2768100 3525800 0 0 0 198520 99023 99500 0 0 0 0 0 0 6095300 2669100 3426300 0 0 0 12192 4145 12688 61909;61910 62205;62206 62205 2 GQSPAGDGSPEPPTPR RLLPTKNNVRSAWYRGQSPAGDGSPEPPTP QSPAGDGSPEPPTPRYNTWVLQDTVLESHL R G Q P R Y 1 1 0 1 0 1 1 3 0 0 0 0 0 0 5 2 1 0 0 0 0 0 16 0 1548.7168 Q9H6R4;A0A0A0MRW6 Q9H6R4 281 296 NOL6 Nucleolar protein 6 yes no 2 8.0788E-05 67.153 By MS/MS 1 0.47823 0.5181 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47823 0.5181 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1307000 923450 383570 0 0 0 0 0 0 1307000 923450 383570 0 0 0 0 0 0 0 0 0 12193 3976 12689 61911 62207 62207 1 GQSSWGTGESFR GAGVAHSPPSTLVWKGQSSWGTGESFRTVL VWKGQSSWGTGESFRTVLVNADGEEVAMRT K G Q F R T 0 1 0 0 0 1 1 3 0 0 0 0 0 1 0 3 1 1 0 0 0 0 12 0 1297.5687 Q03252 Q03252 550 561 LMNB2 Lamin-B2 yes yes 2 4.1161E-30 205.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 2 1.082 0.93447 19.352 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1035 1.1114 NaN 1 0 Median 1.5641 1.2473 5.6325 3 0 Median 0.89078 0.9265 10.554 5 0 Median 1.2348 1.0157 16.211 2 0 Median 119870000 57802000 62071000 0 0 0 0 0 0 35208000 16343000 18865000 4805600 1738700 3066900 73421000 37046000 36375000 6437600 2673700 3763800 12194 2709 12690 61912;61913;61914;61915;61916;61917;61918;61919;61920;61921;61922 62208;62209;62210;62211;62212;62213;62214;62215;62216;62217;62218;62219;62220 62212 13 GQSVHQLLPPTYR AQHLGATLALYRLVKGQSVHQLLPPTYRDV VKGQSVHQLLPPTYRDVWLEWSDAEKKREE K G Q Y R D 0 1 0 0 0 2 0 1 1 0 2 0 0 0 2 1 1 0 1 1 0 0 13 0 1494.7943 A0A087WYN9;Q7Z478 A0A087WYN9 451 463 DHX29 ATP-dependent RNA helicase DHX29 yes no 3 0.020476 38.028 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12195 84 12691 61923 62221 62221 1 GQSVQQVGPQGLLYVQQR VRAHPPLEERARLLRGQSVQQVGPQGLLYV VQQVGPQGLLYVQQRELAVTSPKDGSISIL R G Q Q R E 0 1 0 0 0 6 0 3 0 0 2 0 0 0 1 1 0 0 1 3 0 0 18 0 1984.049 Q96AB6 Q96AB6 35 52 NTAN1 Protein N-terminal asparagine amidohydrolase yes yes 2 6.1202E-12 92.866 By MS/MS 2 0.87818 0.82618 16.326 2 Median 0.87818 0.82618 16.326 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11669000 6060600 5608900 11669000 6060600 5608900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12196 3598 12692 61924;61925 62222;62223 62223 2 GQTCVVHYTGMLEDGKK VETISPGDGRTFPKRGQTCVVHYTGMLEDG TCVVHYTGMLEDGKKFDSSRDRNKPFKFML R G Q K K F 0 0 0 1 1 1 1 3 1 0 1 2 1 0 0 0 2 0 1 2 0 0 17 1 1921.9026 P62942;Q5W0X3;A0A087WZM5 P62942 20 36 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase yes no 3;4 0.00012667 41.554 By matching By MS/MS 1 2 1.3725 1.1899 38.071 3 Median 0.71514 0.6697 NaN 1 0 Median 1.4758 1.2794 10.261 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7356000 3342600 4013400 635620 315180 320440 6720400 3027400 3693000 0 0 0 0 0 0 0 0 0 0 0 0 12197 2612 12693;12694 61926;61927;61928 62224;62225 62225 1276 2 GQTGGDVNVEMDAAPGVDLSR AYLRKNHEEEMLALRGQTGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEQMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 1 0 0 3 0 0 21 0 2086.9589 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P08779 264 284 KRT16 Keratin, type I cytoskeletal 16 yes no 2 1.8936E-38 133.66 By MS/MS By MS/MS By MS/MS 2 2 2 0.33042 0.32482 58.03 3 Median 0.33042 0.32482 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.11782 0.12815 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.36972 0.37221 NaN 1 1 Median NaN NaN NaN 0 0 Median 28196000 26578000 1617300 12432000 11755000 676930 0 0 0 11841000 11296000 544220 0 0 0 3923300 3527200 396120 0 0 0 + 12198 754 12695;12696 61929;61930;61931;61932;61933;61934 62226;62227;62228;62229;62230;62231 62228 279 6 GQTHTLEDFQR CAGIAVASKTYNLKKGQTHTLEDFQRVLDV NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K G Q Q R V 0 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1330.6266 Q99714;Q5H928 Q99714 106 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2;3 7.9473E-05 123.79 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 3 1.1995 1.1258 8.6889 10 Median 1.1367 1.0796 6.3608 2 0 Median 1.4629 1.2371 NaN 1 0 Median 1.1281 1.1116 6.6189 4 2 Median 1.5784 1.3148 13.056 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70382000 32024000 38358000 41765000 19624000 22141000 7206700 3046100 4160600 18129000 8069500 10059000 3281900 1284700 1997300 0 0 0 0 0 0 12199 3764 12697 61935;61936;61937;61938;61939;61940;61941;61942;61943;61944 62232;62233;62234;62235;62236;62237;62238;62239;62240;62241;62242 62232 11 GQTLTLTQQQR AYEQVIKYCTTYQSKGQTLTLTQQQRDVYQ YQSKGQTLTLTQQQRDVYQQEKARMGSAGL K G Q Q R D 0 1 0 0 0 4 0 1 0 0 2 0 0 0 0 0 3 0 0 0 0 0 11 0 1272.6786 H0Y9V7;B4E2Q0;P98194;H0Y8X9;H0Y9S7 H0Y9V7 451 461 ATP2C1 Calcium-transporting ATPase;Calcium-transporting ATPase type 2C member 1 yes no 2 0.011795 60.102 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12200 614 12698 61945 62243 62243 1 GQTLVVQFTVK RFYALSASFEPFSNKGQTLVVQFTVKHEQN FSNKGQTLVVQFTVKHEQNIDCGGGYVKLF K G Q V K H 0 0 0 0 0 2 0 1 0 0 1 1 0 1 0 0 2 0 0 3 0 0 11 0 1218.6972 P27797 P27797 88 98 CALR Calreticulin yes yes 2 0.0044939 69.276 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0053 0.93814 25.262 4 Median 0.71593 0.66025 NaN 1 1 Median 0.94284 0.79932 NaN 1 0 Median 1.0719 1.1011 NaN 1 0 Median 1.2568 1.1017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38152000 22176000 15976000 25426000 15109000 10317000 10520000 5976500 4543600 1816600 916160 900420 389040 174390 214650 0 0 0 0 0 0 12201 2157 12699 61946;61947;61948;61949 62244;62245 62244 2 GQTQDEISR EINDVPLTCRNLLTRGQTQDEISRLSGAAV RNLLTRGQTQDEISRLSGAAVSTRGRFMTT R G Q S R L 0 1 0 1 0 2 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1032.4836 Q7Z7F0 Q7Z7F0 123 131 KIAA0907 UPF0469 protein KIAA0907 yes yes 2 0.0078737 50.607 By MS/MS 1 1.0927 1.1264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0927 1.1264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 614890 277740 337140 0 0 0 0 0 0 614890 277740 337140 0 0 0 0 0 0 0 0 0 12202 3256 12700 61950 62246 62246 1 GQTSTYGFLK RFGVITEVDIKRPSRGQTSTYGFLKFENLD KRPSRGQTSTYGFLKFENLDMSHRAKLAMS R G Q L K F 0 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 2 0 1 0 0 0 10 0 1100.5502 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 367 376 RBM15 Putative RNA-binding protein 15 yes no 2 0.00040727 76.827 By MS/MS 1 1.0241 1.1251 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0241 1.1251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6550400 3094200 3456200 0 0 0 0 0 0 6550400 3094200 3456200 0 0 0 0 0 0 0 0 0 12203 60 12701 61951 62247;62248 62247 2 GQTTLPFRPVTQEEDDDQR SSKLIRILRMSDPERGQTTLPFRPVTQEED LPFRPVTQEEDDDQR_______________ R G Q Q R - 0 2 0 3 0 3 2 1 0 0 1 0 0 1 2 0 3 0 0 1 0 0 19 1 2231.0455 Q96SB8 Q96SB8 1073 1091 SMC6 Structural maintenance of chromosomes protein 6 yes yes 3 0.00010495 52.612 By MS/MS 1 0.54466 0.66242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54466 0.66242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6228200 4245800 1982500 0 0 0 0 0 0 6228200 4245800 1982500 0 0 0 0 0 0 0 0 0 12204 3733 12702 61952 62249 62249 1 GQTVNEDSMDVK ______________________________ ______________________________ M G Q V K K 0 0 1 2 0 1 1 1 0 0 0 1 1 0 0 1 1 0 0 2 0 0 12 0 1321.582 Q9UQR0 Q9UQR0 2 13 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.00014876 88.056 By MS/MS 1 0.79659 0.82232 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79659 0.82232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7359300 4196900 3162400 0 0 0 0 0 0 7359300 4196900 3162400 0 0 0 0 0 0 0 0 0 12205 4363 12703 61953 62250;62251 62250 2 GQTVNEDSMDVKK ______________________________ ______________________________ M G Q K K E 0 0 1 2 0 1 1 1 0 0 0 2 1 0 0 1 1 0 0 2 0 0 13 1 1449.677 Q9UQR0 Q9UQR0 2 14 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.030895 18.413 By MS/MS By matching 1 1 0.49876 0.56725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49876 0.56725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2968200 1734000 1234200 0 0 0 0 0 0 2327700 1492400 835250 0 0 0 640470 241570 398910 0 0 0 12206 4363 12704 61954;61955 62252 62252 1 GQVCVMIHSGSR IFNEYAAKKMGIDHKGQVCVMIHSGSRGLG DHKGQVCVMIHSGSRGLGHQVATDALVAME K G Q S R G 0 1 0 0 1 1 0 2 1 1 0 0 1 0 0 2 0 0 0 2 0 0 12 0 1329.6282 Q9Y3I0 Q9Y3I0 252 263 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00044042 78.655 By MS/MS By MS/MS 1 1 1.2 1.1098 9.0449 2 Median 1.1905 1.1831 NaN 1 0 Median 1.2097 1.041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961800 1775400 2186500 1654000 680910 973110 2307800 1094500 1213300 0 0 0 0 0 0 0 0 0 0 0 0 12207 4430 12705 61956;61957 62253;62254 62254 2 GQVEVFALR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV GVWSEKGQVEVFALRRLLQVVEEPQALAAF K G Q L R R 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1017.5607 Q9BQ67;M0QX71 Q9BQ67 173 181 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.00078048 98.299 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 1.2667 1.206 27.444 8 Median 1.0408 0.99952 NaN 1 0 Median 1.2513 1.0589 NaN 1 0 Median 1.2055 1.2086 11.461 2 0 Median 1.2117 1.0386 NaN 1 0 Median 1.5936 1.6012 27.429 3 2 Median NaN NaN NaN 0 0 Median 54883000 23361000 31522000 9483300 4418300 5065000 5738900 2363700 3375200 20922000 9026000 11896000 4778200 2009500 2768700 13961000 5543200 8417500 0 0 0 12208 3784 12706 61958;61959;61960;61961;61962;61963;61964;61965 62255;62256;62257;62258;62259;62260;62261;62262;62263 62258 9 GQVEVFALRR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV VWSEKGQVEVFALRRLLQVVEEPQALAAFL K G Q R R L 1 2 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 10 1 1173.6618 Q9BQ67;M0QX71 Q9BQ67 173 182 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.0010051 97.431 By matching By MS/MS 1 1 1.4071 1.4678 2.4068 2 Median 1.429 1.4431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3855 1.493 NaN 1 0 Median NaN NaN NaN 0 0 Median 11406000 4706600 6699300 5034000 1906000 3128000 0 0 0 0 0 0 0 0 0 6371900 2800700 3571300 0 0 0 12209 3784 12707 61966;61967 62264 62264 1 GQVEYLLK EEYVVEKVLDRRVVKGQVEYLLKWKGFSEE LDRRVVKGQVEYLLKWKGFSEEHNTWEPEK K G Q L K W 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 8 0 948.52803 P45973;F8VNY3 P45973 33 40 CBX5 Chromobox protein homolog 5 yes no 2 0.0048619 79.116 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1.2299 1.0998 23.698 8 Median 0.94289 0.87 NaN 1 0 Median 1.7877 1.485 NaN 1 1 Median 1.0029 0.9738 NaN 1 0 Median 1.8234 1.4735 NaN 1 0 Median 0.85736 0.89419 2.366 2 0 Median 1.5916 1.3073 7.2342 2 0 Median 249980000 131250000 118730000 2833600 1525900 1307700 3226900 1425800 1801100 4335600 2289500 2046100 3965900 1392600 2573400 212040000 115430000 96610000 23573000 9181000 14392000 12210 2331 12708 61968;61969;61970;61971;61972;61973;61974;61975 62265;62266;62267;62268;62269;62270;62271;62272;62273;62274 62271 10 GQVFDVGPR MAAAAAAGAGPEMVRGQVFDVGPRYTNLSY GPEMVRGQVFDVGPRYTNLSYIGEGAYGMV R G Q P R Y 0 1 0 1 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 2 0 0 9 0 973.49813 P28482 P28482 16 24 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 0.0038329 98.523 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.5967 1.6466 40.373 5 Median NaN NaN NaN 0 0 Median 0.82284 0.68912 NaN 1 0 Median 1.7329 1.7921 4.3839 2 1 Median 1.9067 1.6466 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5826 1.3952 NaN 1 0 Median 15584000 5884000 9699700 0 0 0 521220 287200 234020 11770000 4391900 7377900 2925400 1091900 1833500 0 0 0 367250 112930 254320 12211 2166 12709 61976;61977;61978;61979;61980;61981;61982;61983 62275;62276;62277;62278;62279;62280;62281 62278 7 GQVGGDVNVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 0 0 0 4 0 0 21 0 2084.9797 P02533;CON__P02533;CON__Q6IFX2 P02533 262 282 KRT14 Keratin, type I cytoskeletal 14 no no 2 4.61E-28 109.84 By MS/MS By MS/MS 1 3 0.20717 0.21837 154.11 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20717 0.21837 154.11 2 2 Median NaN NaN NaN 0 0 Median 11761000 11054000 707000 4253200 4253200 0 0 0 0 0 0 0 0 0 0 7508200 6801200 707000 0 0 0 + 12212 739;787 12710;12711 61984;61985;61986;61987 62282;62283;62284;62285 62282 260 4 GQVGGEINVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGEINVEMDAAP INVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 2 0 1 2 4 0 1 1 0 1 0 1 1 0 0 0 3 0 0 21 0 2113.011 CON__Q04695;Q04695;F5GWP8;K7EPJ9;K7ESE1 CON__Q04695 231 251 KRT17 Keratin, type I cytoskeletal 17 no no 2 2.8032E-14 96.414 By MS/MS By matching By matching 2 1 1 0.97229 0.90912 55.274 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2456 1.2317 3.1237 2 0 Median 0.44598 0.38908 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77578 0.68603 NaN 1 0 Median 20021000 9338000 10683000 0 0 0 0 0 0 19110000 8644200 10466000 774080 610530 163550 0 0 0 137090 83282 53804 + 12213 768 12712;12713 61988;61989;61990;61991 62286;62287;62288;62289 62289 291 4 GQVGGQVSVEVDSAPGTDLAK AYLKKNHEEEISTLRGQVGGQVSVEVDSAP VSVEVDSAPGTDLAKILSDMRSQYEVMAEQ R G Q A K I 2 0 0 2 0 2 1 4 0 0 1 1 0 0 1 2 1 0 0 4 0 0 21 0 2013.0015 CON__P08727;P08727;K7EMS3 CON__P08727 227 247 KRT19 Keratin, type I cytoskeletal 19 yes no 2 3.1569E-28 158.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 0.85966 0.86685 14.29 6 Median 0.89369 0.83075 24.799 2 2 Median NaN NaN NaN 0 0 Median 0.82263 0.84746 NaN 1 0 Median 1.213 1.0258 NaN 1 0 Median 0.85966 0.83927 7.7725 2 0 Median NaN NaN NaN 0 0 Median 133120000 68613000 64508000 18822000 7288100 11534000 0 0 0 94239000 50905000 43334000 2367600 1292400 1075200 17692000 9127100 8565300 0 0 0 + 12214 752 12714 61992;61993;61994;61995;61996;61997 62290;62291;62292;62293;62294;62295;62296;62297;62298;62299;62300;62301;62302;62303;62304;62305;62306;62307;62308;62309;62310;62311;62312;62313;62314 62295 25 GQVGGTFAR DVLGCVCVNPGRLTKGQVGGTFARLYLRRP PGRLTKGQVGGTFARLYLRRPAADGAERQS K G Q A R L 1 1 0 0 0 1 0 3 0 0 0 0 0 1 0 0 1 0 0 1 0 0 9 0 891.45626 Q14181 Q14181 565 573 POLA2 DNA polymerase alpha subunit B yes yes 2 0.0113 71.379 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12215 2862 12715 61998 62315 62315 1 GQVKPSTSSQPILSAPGPTK SESRSEFLEKLQRARGQVKPSTSSQPILSA STSSQPILSAPGPTKLTVGNWSLTCLKEGE R G Q T K L 1 0 0 0 0 2 0 2 0 1 1 2 0 0 4 4 2 0 0 1 0 0 20 1 1979.0688 A0A087X2H1;Q9ULT8;G3V4V5;H0YJP0 A0A087X2H1 733 752 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 9.2094E-09 72.585 By MS/MS By MS/MS 2 3 0.62962 0.62132 24.04 5 Median 0.71708 0.7411 24.931 2 0 Median 0.53968 0.52247 19.354 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26145000 16699000 9446200 7505700 4636300 2869300 18639000 12062000 6576900 0 0 0 0 0 0 0 0 0 0 0 0 12216 137 12716 61999;62000;62001;62002;62003 62316;62317;62318;62319;62320 62319 5 GQVLAAAYELQR LNEAWADLLELLDTRGQVLAAAYELQRFLH DTRGQVLAAAYELQRFLHGARQALARVQHK R G Q Q R F 3 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 1 1 0 0 12 0 1317.7041 O15020 O15020 1794 1805 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 1.7424E-05 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3553 1.2198 15.882 4 Median 1.1705 1.1376 NaN 1 0 Median 1.5693 1.3079 NaN 1 0 Median 0.92732 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7338 1.453 NaN 1 0 Median 20908000 9334500 11574000 3680100 1362900 2317200 1517500 351040 1166400 14783000 7346300 7437000 0 0 0 0 0 0 927220 274180 653040 12217 1512 12717 62004;62005;62006;62007 62321;62322;62323;62324;62325;62326 62324 6 GQVLNIQMR TDATLDDIKEWLEDKGQVLNIQMRRTLHKA EWLEDKGQVLNIQMRRTLHKAFKGSIFVVF K G Q M R R 0 1 1 0 0 2 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1057.5702 P05455;E7ERC4;E9PGX9 P05455 135 143 SSB Lupus La protein yes no 2 0.0005301 117.17 By MS/MS By matching By matching 1 1 2 0.75275 1.3481 67.846 4 Linear 1.104 1.0484 NaN 1 0 Median 0.29843 0.255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77396 0.66204 56.608 2 0 Median 19159000 7882800 11276000 16087000 6371500 9715200 147940 118250 29690 0 0 0 0 0 0 0 0 0 2924200 1393100 1531100 12218 1867 12718 62008;62009;62010;62011 62327 62327 1 GQVLNSDELQELYEGLR NSVQFSNHTGYAHWKGQVLNSDELQELYEG VLNSDELQELYEGLRLNNMNKYDYVLTGYT K G Q L R L 0 1 1 1 0 2 3 2 0 0 4 0 0 0 0 1 0 0 1 1 0 0 17 0 1961.9694 O00764;F2Z2Y4 O00764 54 70 PDXK Pyridoxal kinase yes no 2 0.00047221 42.556 By MS/MS By matching 1 1 1.1031 1.0695 12.552 2 Median 1.2045 1.1688 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0103 0.97869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748800 666050 1082700 1218100 418900 799230 0 0 0 530640 247150 283490 0 0 0 0 0 0 0 0 0 12219 1478 12719 62012;62013 62328 62328 1 GQVPMQDPR AQVGMPGSGPVSMERGQVPMQDPRAAMQRG PVSMERGQVPMQDPRAAMQRGSLPANVPTP R G Q P R A 0 1 0 1 0 2 0 1 0 0 0 0 1 0 2 0 0 0 0 1 0 0 9 0 1026.4917 P33240;E9PID8 P33240 295 303 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.0025948 70.919 By MS/MS 1 0.73067 0.75486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73067 0.75486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6415200 3921600 2493600 0 0 0 0 0 0 6415200 3921600 2493600 0 0 0 0 0 0 0 0 0 12220 2222 12720 62014 62329;62330 62330 2 GQVPPLVTTNFLVK DRNNRGTEPFVTGVRGQVPPLVTTNFLVKD RGQVPPLVTTNFLVKDQGNASPRYIRCTSY R G Q V K D 0 0 1 0 0 1 0 1 0 0 2 1 0 1 2 0 2 0 0 3 0 0 14 0 1511.8712 P53992;G5EA31 P53992 351 364 SEC24C Protein transport protein Sec24C yes no 2 0.0029892 39.918 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 0.8367 0.76154 14.846 6 Median 0.70875 0.69523 NaN 1 0 Median 0.82425 0.72531 NaN 1 0 Median 0.75075 0.81773 16.006 2 0 Median NaN NaN NaN 0 0 Median 0.98253 1.0102 NaN 1 0 Median 0.915 0.79419 NaN 1 0 Median 14611000 8317900 6293200 4150700 2449300 1701400 1816000 993100 822940 8032000 4576700 3455300 0 0 0 481790 231070 250730 130670 67760 62905 12221 1134 12721 62015;62016;62017;62018;62019;62020 62331;62332;62333;62334;62335 62333 5 GQVQEVGWHDVAGWLGR HTVYVVHDGFEGLAKGQVQEVGWHDVAGWL VQEVGWHDVAGWLGRGGSMLGTKRTLPKGQ K G Q G R G 1 1 0 1 0 2 1 4 1 0 1 0 0 0 0 0 0 2 0 3 0 0 17 0 1892.9282 P17858 P17858 445 461 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2;3 0.00089236 54.7 By MS/MS By matching 3 1 1.4008 1.3306 18.982 4 Median 1.4707 1.5249 19.372 3 1 Median 1.3342 1.161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13821000 5294300 8526800 11846000 4475400 7370800 1975000 818960 1156000 0 0 0 0 0 0 0 0 0 0 0 0 12222 2047 12722 62021;62022;62023;62024 62336;62337 62337 2 GQVSESEDSITK PPKLRRRTFSLTEVRGQVSESEDSITKQIE EVRGQVSESEDSITKQIESLETEMEFRSAQ R G Q T K Q 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 3 1 0 0 1 0 0 12 0 1278.5939 O95239 O95239 807 818 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0045482 43.282 By MS/MS By MS/MS 1 2 1.0754 0.97742 10.888 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90451 0.97742 NaN 1 0 Median 1.1518 1.0033 15.25 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4172200 2007400 2164800 0 0 0 0 0 0 2557800 1239700 1318100 1614400 767610 846790 0 0 0 0 0 0 12223 1757 12723 62025;62026;62027 62338;62339;62340;62341 62340 4 GQVTLYEHNNELVTGSSYESPPPDFR ______________________________ LVTGSSYESPPPDFRGQWINLPVLQLTKDP R G Q F R G 0 1 2 1 0 1 3 2 1 0 2 0 0 1 3 3 2 0 2 2 0 0 26 0 2935.3624 Q9NRG9;F8VUB6 Q9NRG9 14 39 AAAS Aladin yes no 3 3.4844E-13 54.744 By MS/MS By MS/MS 1 1 0.71661 0.66501 12.102 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61207 0.61047 NaN 1 0 Median 0.83902 0.72442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15899000 9784900 6113900 0 0 0 0 0 0 14697000 9148500 5548100 1202300 636440 565890 0 0 0 0 0 0 12224 4082 12724 62028;62029 62342;62343;62344 62343 3 GQVVSLIR GHAYSVTGAKQVNYRGQVVSLIRMRNPWGE AKQVNYRGQVVSLIRMRNPWGEVEWTGAWS R G Q I R M 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 2 0 0 8 0 870.5287 P07384;E9PL37 P07384 286 293 CAPN1 Calpain-1 catalytic subunit yes no 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS 1 1 1 1.5768 1.3573 19.297 3 Median 1.0444 0.98801 NaN 1 0 Median 1.6198 1.4002 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5768 1.3573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27864000 12027000 15837000 13858000 6640700 7217500 12854000 5004300 7849900 0 0 0 1151400 382220 769160 0 0 0 0 0 0 12225 1886 12725 62030;62031;62032 62345;62346;62347;62348;62349 62346 5 GQVVTVHLQTSLENGTR KTLVPGPPGSSRPVKGQVVTVHLQTSLENG VVTVHLQTSLENGTRVQEEPELVFTLGDCD K G Q T R V 0 1 1 0 0 2 1 2 1 0 2 0 0 0 0 1 3 0 0 3 0 0 17 0 1837.9646 Q14318;M0R2K9;M0R1Q0;M0R1S6;M0R2Q6 Q14318 120 136 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 3 6.5437E-05 46.892 By MS/MS By matching 1 1 0.78245 0.77504 0.57341 2 Median 0.79223 0.77191 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77279 0.77819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9030100 5179700 3850400 6062000 3595100 2466800 0 0 0 2968200 1584600 1383600 0 0 0 0 0 0 0 0 0 12226 2872 12726 62033;62034 62350 62350 1 GQVWINGFNLGR DLPQDTFIQFPGWTKGQVWINGFNLGRYWP WTKGQVWINGFNLGRYWPARGPQLTLFVPQ K G Q G R Y 0 1 2 0 0 1 0 3 0 1 1 0 0 1 0 0 0 1 0 1 0 0 12 0 1359.7048 E7EQ29;P16278;Q6UWU2 E7EQ29 448 459 GLB1;GLB1L Beta-galactosidase;Beta-galactosidase-1-like protein yes no 2 0.0020388 49.715 By MS/MS 1 1.1193 1.1174 NaN 1 Median 1.1193 1.1174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1686700 780260 906450 1686700 780260 906450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12227 874 12727 62035 62351 62351 1 GQVYILGR SQERVEGKVQVSVLKGQVYILGRESPLSLY VQVSVLKGQVYILGRESPLSLYNEELVSMN K G Q G R E 0 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 904.51305 P00966 P00966 356 363 ASS1 Argininosuccinate synthase yes yes 2 0.0065188 70.912 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 1.3281 1.3586 30.849 7 Median 1.0855 1.0535 NaN 1 0 Median 1.3362 1.1658 21.638 2 0 Median 1.3281 1.4758 NaN 1 0 Median 2.5078 2.184 NaN 1 0 Median 1.1323 1.1663 38.397 2 0 Median NaN NaN NaN 0 0 Median 20891000 9030000 11861000 6850900 3495500 3355400 8286500 3098000 5188500 2570800 1215600 1355200 1565600 555830 1009800 1617400 665010 952390 0 0 0 12228 1828 12728 62036;62037;62038;62039;62040;62041;62042 62352;62353;62354 62352 3 GQWINLPVLQLTK LVTGSSYESPPPDFRGQWINLPVLQLTKDP FRGQWINLPVLQLTKDPLKTPGRLDHGTRT R G Q T K D 0 0 1 0 0 2 0 1 0 1 3 1 0 0 1 0 1 1 0 1 0 0 13 0 1508.8715 Q9NRG9;F8VUB6 Q9NRG9 40 52 AAAS Aladin yes no 2 0.018276 31.843 By matching By matching By MS/MS By matching 1 1 1 1 1.0775 1.0219 10.513 4 Median 0.85907 0.84457 NaN 1 0 Median 1.1733 1.0412 NaN 1 0 Median 0.98946 1.003 NaN 1 0 Median 1.2101 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5071200 3078800 1992500 230300 121710 108580 570090 265060 305030 3981400 2576000 1405500 289410 116010 173400 0 0 0 0 0 0 12229 4082 12729 62043;62044;62045;62046 62355 62355 1 GQYFGELALVTNKPR KDGGNQEVEIARCHKGQYFGELALVTNKPR GQYFGELALVTNKPRAASAYAVGDVKCLVM K G Q P R A 1 1 1 0 0 1 1 2 0 0 2 1 0 1 1 0 1 0 1 1 0 0 15 1 1691.8995 P13861;H7C330;P31323 P13861 333 347 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit yes no 3 0.00017168 58.885 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.82182 0.78981 14.768 4 Median 0.85729 0.85569 NaN 1 0 Median 0.85072 0.77527 NaN 1 0 Median 0.79391 0.80462 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.58826 0.61068 NaN 1 0 Median NaN NaN NaN 0 0 Median 16858000 9846700 7010800 6200800 3542100 2658800 569160 284480 284680 8244000 4873200 3370800 0 0 0 1843600 1147000 696630 0 0 0 12230 1998 12730 62047;62048;62049;62050 62356;62357;62358 62358 3 GQYHTLQAGFSSR AEPEPEAETARGTSRGQYHTLQAGFSSRSQ SRGQYHTLQAGFSSRSQGLSGDKTSGFRPI R G Q S R S 1 1 0 0 0 2 0 2 1 0 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1450.6953 Q9Y446;E9PQ15;E9PK71 Q9Y446 82 94 PKP3 Plakophilin-3 yes no 3 0.025009 32.275 By MS/MS 1 0.90306 0.88349 NaN 1 Median 0.90306 0.88349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589600 729230 860360 1589600 729230 860360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12231 4437 12731 62051 62359 62359 1 GQYISPFHDIPIYADK APFSLEYRVFLKNEKGQYISPFHDIPIYAD QYISPFHDIPIYADKDVFHMVVEVPRWSNA K G Q D K D 1 0 0 2 0 1 0 1 1 3 0 1 0 1 2 1 0 0 2 0 0 0 16 0 1862.9203 Q15181;Q5SQT6 Q15181 26 41 PPA1 Inorganic pyrophosphatase yes no 3 0.0024037 28.212 By MS/MS By matching By matching 1 1 1 0.85793 0.80448 14.058 3 Median 0.85793 0.80448 NaN 1 0 Median 0.83506 0.70178 NaN 1 0 Median 0.97154 0.9296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14189000 7056200 7132900 7007100 3285500 3721600 3322900 1912400 1410500 3859200 1858300 2000900 0 0 0 0 0 0 0 0 0 12232 2934 12732 62052;62053;62054 62360;62361 62361 2 GRAPQVLVLAPTR PLIEKLHGELQDRKRGRAPQVLVLAPTREL KRGRAPQVLVLAPTRELANQVSKDFSDITK R G R T R E 2 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 1 0 0 2 0 0 13 1 1376.8252 Q9NR30 Q9NR30 258 270 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 3.6414E-09 169.82 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 2 8 4 0.97343 0.98958 14.719 23 Median 0.81291 0.90316 NaN 1 0 Median 0.88805 0.87861 17.164 2 0 Median 1.0383 1.16 5.1298 6 0 Median 0.97284 0.86203 7.7696 2 0 Median 0.91368 0.97511 13.405 8 1 Median 0.97768 0.87087 8.2855 4 0 Median 256260000 130600000 125670000 8241000 4405100 3836000 18962000 9491200 9470500 123850000 62151000 61701000 5832500 2821100 3011400 89766000 47121000 42645000 9609700 4607900 5001800 12233 4076 12733 62055;62056;62057;62058;62059;62060;62061;62062;62063;62064;62065;62066;62067;62068;62069;62070;62071;62072;62073;62074;62075;62076;62077 62362;62363;62364;62365;62366;62367;62368;62369;62370;62371;62372;62373;62374;62375;62376;62377;62378;62379;62380;62381;62382 62367 21 GRAQADLALEK RGQQEREVARLTQERGRAQADLALEKAARA TQERGRAQADLALEKAARAELEMRLQNALN R G R E K A 3 1 0 1 0 1 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 A0A087WY61;Q14980 Q14980 1014 1024 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0028838 66.19 By MS/MS By MS/MS 1 2 1.085 1.0291 5.799 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90369 1.0291 NaN 1 0 Median 1.1568 1.0212 8.1769 2 0 Median 29705000 14975000 14730000 0 0 0 0 0 0 0 0 0 0 0 0 22615000 11569000 11046000 7089200 3405800 3683400 12234 2905;77 12734 62078;62079;62080 62383;62384;62385;62386;62387 62384 5 GRDIVVLGVEK AQEAVKKGSTAVGVRGRDIVVLGVEKKSVA VGVRGRDIVVLGVEKKSVAKLQDERTVRKI R G R E K K 0 1 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 11 1 1183.6925 O14818 O14818 37 47 PSMA7 Proteasome subunit alpha type-7 yes yes 2;3 0.0006725 106.01 By MS/MS By MS/MS By MS/MS 2 4 1 1.7449 1.7627 15.527 3 Plateau 1.7467 1.8153 NaN 1 0 Median 1.582 1.4276 9.8693 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87498000 25114000 62384000 66769000 19280000 47489000 19184000 5833400 13350000 1544700 0 1544700 0 0 0 0 0 0 0 0 0 12235 1497 12735 62081;62082;62083;62084;62085;62086;62087 62388;62389;62390;62391;62392;62393;62394 62388 7 GRDIVVLGVEKK AQEAVKKGSTAVGVRGRDIVVLGVEKKSVA GVRGRDIVVLGVEKKSVAKLQDERTVRKIC R G R K K S 0 1 0 1 0 0 1 2 0 1 1 2 0 0 0 0 0 0 0 3 0 0 12 2 1311.7874 O14818 O14818 37 48 PSMA7 Proteasome subunit alpha type-7 yes yes 3 0.00015273 77.912 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.0688 1.1172 8.9837 5 Median 1.0688 1.1381 NaN 1 0 Median 1.1329 1.0043 10.931 2 0 Median 0.99787 1.1172 NaN 1 0 Median 1.4143 1.1666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44392000 20357000 24036000 21708000 10244000 11464000 17571000 7616700 9954000 2862200 1566800 1295400 2251800 929570 1322300 0 0 0 0 0 0 12236 1497 12736 62088;62089;62090;62091;62092 62395;62396;62397;62398;62399;62400 62396 6 GRDLGAYLR FLKLCEEWPVDETKRGRDLGAYLRQRVAQA VDETKRGRDLGAYLRQRVAQAFREGENTQY R G R L R Q 1 2 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 1 1019.5512 Q5TAQ0;V5IRT4;Q9BRT2 Q5TAQ0 24 32 UQCC2 Ubiquinol-cytochrome-c reductase complex assembly factor 2 yes no 2 0.015228 66.621 By MS/MS 1 1.6601 1.4154 NaN 1 Median NaN NaN NaN 0 0 Median 1.6601 1.4154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3614800 1049900 2564900 0 0 0 3614800 1049900 2564900 0 0 0 0 0 0 0 0 0 0 0 0 12237 3100 12737 62093 62401 62401 1 GRDVIAQSQSGTGK KPSAIQQRAIKQIIKGRDVIAQSQSGTGKT KGRDVIAQSQSGTGKTATFSISVLQCLDIQ K G R G K T 1 1 0 1 0 2 0 3 0 1 0 1 0 0 0 2 1 0 0 1 0 0 14 1 1402.7165 P38919;I3L3H2 P38919 75 88 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 3 0.018748 23.481 By matching By MS/MS By matching 1 1 1 1.1777 1.1936 8.1623 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.178 1.1936 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1768 1.2188 NaN 1 0 Median 1.1394 1.0483 NaN 1 0 Median 2273700 1176600 1097100 0 0 0 0 0 0 903620 434810 468810 0 0 0 894500 510890 383600 475600 230920 244680 12238 2278 12738 62094;62095;62096 62402 62402 1 GRDWNVDLIPK KRFKIPGSPPESMGRGRDWNVDLIPKFLMA SMGRGRDWNVDLIPKFLMANGQLVKMLLYT R G R P K F 0 1 1 2 0 0 0 1 0 1 1 1 0 0 1 0 0 1 0 1 0 0 11 1 1311.6935 P31150;G5E9U5;P50395;Q5SX87;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395 69 79 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 3 0.00082552 52.693 By MS/MS By matching By MS/MS 1 2 1 0.83507 0.80172 11.736 4 Median 0.97976 0.97765 NaN 1 0 Median 0.83507 0.80172 1.9169 2 0 Median 0.73519 0.74459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14999000 7998200 7001300 7048100 3418700 3629400 1914500 1046000 868510 6036800 3533500 2503300 0 0 0 0 0 0 0 0 0 12239 2411;2201 12739 62097;62098;62099;62100 62403;62404 62403 2 GREDESYNISEVMSK ______________________________ GREDESYNISEVMSKEEILSVAKKNKKENE R G R S K E 0 1 1 1 0 0 3 1 0 1 0 1 1 0 0 3 0 0 1 1 0 0 15 1 1742.7781 F6XU50;A0A0B4J1V9;Q9NRZ9;B1ALG6 F6XU50 6 20 HELLS Lymphoid-specific helicase yes no 3 0.00091877 37.583 By MS/MS By matching 1 2 0.83039 0.88435 28.428 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77934 0.88435 NaN 1 0 Median 1.0848 1.0417 37.916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7814400 4432300 3382100 0 0 0 0 0 0 6283500 3740100 2543400 1530900 692180 838740 0 0 0 0 0 0 12240 211 12740 62101;62102;62103 62405 62405 1 GREEESDQIR IVSMLSVPAIFYRPKGREEESDQIREKFAV FYRPKGREEESDQIREKFAVPESDHLTYLN K G R I R E 0 2 0 1 0 1 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 10 1 1217.5636 Q92620 Q92620 989 998 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 3 0.016408 27.644 By matching By MS/MS 1 1 0.96075 0.99433 3.9977 2 Median 0.87002 0.96661 NaN 1 0 Median 1.0609 1.0228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 492410 229870 262540 62552 26053 36499 429860 203820 226040 0 0 0 0 0 0 0 0 0 0 0 0 12241 3546 12741 62104;62105 62406 62406 1 GREEINFVEIK IDDEAFKRLQGKRNRGREEINFVEIKGDDQ KRNRGREEINFVEIKGDDQLSGAQQWMTKS R G R I K G 0 1 1 0 0 0 3 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 11 1 1332.7038 Q92733;H0YE12;H0Y679 Q92733 404 414 PRCC Proline-rich protein PRCC yes no 2;3 0.00042896 59.57 By MS/MS By matching 2 1 1.0937 1.234 19.869 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0937 1.223 12.418 2 0 Median 0.97958 0.89817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12236000 5253100 6983200 0 0 0 0 0 0 10785000 4459400 6325500 1451400 793740 657700 0 0 0 0 0 0 12242 3550 12742 62106;62107;62108 62407;62408 62407 2 GREEWESAALQNANTK IVHYDCHLAAVRLARGREEWESAALQNANT REEWESAALQNANTKCNGLLPVWGPHVPES R G R T K C 3 1 2 0 0 1 3 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 16 1 1802.8547 Q5T4S7;X6R960 Q5T4S7 4900 4915 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 4.1293E-05 65.105 By matching By MS/MS 1 1 1.2205 1.1945 16.225 2 Median 1.0305 1.065 NaN 1 0 Median 1.4457 1.3397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18059000 7527500 10531000 7254400 2999700 4254600 10804000 4527800 6276700 0 0 0 0 0 0 0 0 0 0 0 0 12243 3089 12743 62109;62110 62409 62409 1 GREFGNLTR ______________________________ ______________________________ M G R T R M 0 2 1 0 0 0 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 9 1 1048.5414 O14949 O14949 2 10 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 0.017566 63.216 By matching By MS/MS By matching 1 1 2 1.3304 1.2802 18.889 4 Median 1.4794 1.476 NaN 1 0 Median 1.3512 1.1521 NaN 1 0 Median 1.0783 1.1845 25.904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26694000 11053000 15641000 12195000 5210400 6984400 11805000 4479800 7325400 2694300 1362700 1331600 0 0 0 0 0 0 0 0 0 12244 1505 12744 62111;62112;62113;62114 62410 62410 1 GREFSFEAWNAK TPTQTNGSNVPFKPRGREFSFEAWNAKITD KPRGREFSFEAWNAKITDLKQKVENLFNEK R G R A K I 2 1 1 0 0 0 2 1 0 0 0 1 0 2 0 1 0 1 0 0 0 0 12 1 1440.6786 P78347;A0A494C1K3 P78347 718 729 GTF2I General transcription factor II-I yes no 2;3 1.6126E-05 101.38 By MS/MS By matching By matching 2 1 1 0.96786 0.97247 19.116 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74238 0.84161 5.2248 2 0 Median 1.3841 1.2274 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2161 1.0829 NaN 1 0 Median 29045000 16747000 12298000 0 0 0 0 0 0 28737000 16628000 12109000 197440 71073 126370 0 0 0 110650 48357 62298 12245 2642 12745 62115;62116;62117;62118 62411;62412;62413;62414 62414 4 GRELPTAFDYVEFTR ADYCVSHMKPYVDGKGRELPTAFDYVEFTR GRELPTAFDYVEFTRSLFVN__________ K G R T R S 1 2 0 1 0 0 2 1 0 0 1 0 0 2 1 0 2 0 1 1 0 0 15 1 1799.8842 A0A0D9SF54;Q13813 Q13813 2453 2467 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.0092E-08 102.73 By MS/MS By matching By MS/MS By matching By matching 3 1 3 1 1 0.80905 0.94764 26.046 9 Median 0.88177 0.94764 13.538 3 3 Median 0.7419 0.71435 NaN 1 0 Median 0.7723 0.9756 45.133 3 0 Median 0.97161 0.87986 NaN 1 0 Median 0.94977 1.0274 NaN 1 0 Median NaN NaN NaN 0 0 Median 47016000 25346000 21670000 13328000 6898000 6429800 329160 175010 154160 31939000 17447000 14492000 134160 79483 54682 1285600 746400 539230 0 0 0 12246 264;2838 12746 62119;62120;62121;62122;62123;62124;62125;62126;62127 62415;62416;62417;62418;62419;62420;62421;62422 62421 8 GRENYSSYSSFSSPHMKPAPVGSR PYSRSKLRPGFMEDRGRENYSSYSSFSSPH SFSSPHMKPAPVGSRGRGTPAYPESTFGSR R G R S R G 1 2 1 0 0 0 1 2 1 0 0 1 1 1 3 7 0 0 2 1 0 0 24 2 2627.2187 Q5BKZ1 Q5BKZ1 150 173 ZNF326 DBIRD complex subunit ZNF326 yes yes 4 1.096E-07 39.124 By MS/MS 1 0.65673 0.76826 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65673 0.76826 NaN 1 0 Median NaN NaN NaN 0 0 Median 9727200 4994500 4732700 0 0 0 0 0 0 0 0 0 0 0 0 9727200 4994500 4732700 0 0 0 12247 3042 12747 62128 62423 62423 1 GREPANEASVEYLQEVAR EEEGRFLKAYSPASRGREPANEASVEYLQE PANEASVEYLQEVARIRLCLDRAADFLSEP R G R A R I 3 2 1 0 0 1 4 1 0 0 1 0 0 0 1 1 0 0 1 2 0 0 18 1 2016.9865 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4263 4280 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 2.1259E-08 92.993 By MS/MS By MS/MS 1 1 1.0699 1.0798 43.834 2 Median 0.7288 0.79199 NaN 1 0 Median 1.5707 1.4721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12136000 6446100 5689800 9628000 5497800 4130200 2507900 948320 1559600 0 0 0 0 0 0 0 0 0 0 0 0 12248 189 12748 62129;62130 62424;62425;62426 62425 3 GRFPESSAVQSSSFER SRQQNRFNDFDHRERGRFPESSAVQSSSFE RFPESSAVQSSSFERRDRFVGQSEGKKARP R G R E R R 1 2 0 0 0 1 2 1 0 0 0 0 0 2 1 5 0 0 0 1 0 0 16 1 1769.8333 Q9NWH9;H7C3F4;H0YMM0 Q9NWH9 777 792 SLTM SAFB-like transcription modulator yes no 3 4.5548E-07 90.453 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.87371 0.89384 13.566 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80603 0.9803 NaN 1 0 Median 0.9532 0.93317 NaN 1 0 Median 0.7669 0.83143 1.2825 2 0 Median 1.1278 1.0056 22.753 2 1 Median 39680000 22415000 17265000 0 0 0 0 0 0 9796400 5211700 4584700 4163900 2116800 2047100 23189000 13931000 9258600 2530100 1155900 1374200 12249 4149 12749 62131;62132;62133;62134;62135;62136 62427;62428;62429;62430;62431;62432;62433;62434;62435 62434 9 GRGTGEAEEEYVGPR LAGNAVRAGVREKRRGRGTGEAEEEYVGPR GRGTGEAEEEYVGPRLSRRILQQARQQQEE R G R P R L 1 2 0 0 0 0 4 4 0 0 0 0 0 0 1 0 1 0 1 1 0 0 15 1 1605.7383 Q13895;F8WBL2 Q13895 39 53 BYSL Bystin yes no 3 0.00010743 53.995 By matching By MS/MS By matching 1 1 1 1.059 1.1382 16.937 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1826 1.1031 NaN 1 0 Median 1.059 1.1382 NaN 1 0 Median 0.94635 0.83667 NaN 1 0 Median 6927900 2867600 4060300 0 0 0 0 0 0 0 0 0 1173200 470580 702620 4628500 1814400 2814100 1126200 582680 543550 12250 2845 12750 62137;62138;62139 62436 62436 1 GRHEVGALVR KELKLVFPGAQRMNRGRHEVGALVRACKAN QRMNRGRHEVGALVRACKANGVTDLLVVHE R G R V R A 1 2 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 2 0 0 10 1 1092.6152 E7ENR5;H0Y714;Q96G21;B9A008;B8ZZ47 E7ENR5 62 71 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.018622 54.982 By MS/MS By matching 1 1 1.4459 1.4009 18.263 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4934 1.594 NaN 1 0 Median 1.3998 1.2312 NaN 1 0 Median 2406100 978620 1427400 0 0 0 0 0 0 0 0 0 0 0 0 2174600 889800 1284800 231460 88826 142630 12251 865 12751 62140;62141 62437 62437 1 GRIPLLLTSLSFK VVKKWLEVEIAPDIRGRIPLLLTSLSFKVL IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R G R F K V 0 1 0 0 0 0 0 1 0 1 4 1 0 1 1 2 1 0 0 0 0 0 13 1 1443.8813 Q14690;A0A3B3IUD7 Q14690 1176 1188 PDCD11 Protein RRP5 homolog yes no 2;3 0.00019809 90.108 By MS/MS By matching By matching By matching 2 1 1 1 1.1738 1.3153 10.148 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9804 1.164 2.0647 2 0 Median 1.4139 1.3649 NaN 1 0 Median 1.1738 1.3153 NaN 1 0 Median 1.5732 1.4644 NaN 1 0 Median 2337500 1115000 1222500 0 0 0 0 0 0 2034800 977720 1057000 57770 21215 36554 195750 95950 99798 49257 20109 29148 12252 448 12752 62142;62143;62144;62145;62146 62438;62439;62440 62439 3 GRIPVNTR KNLGLEELGIELDPRGRIPVNTRFQTKIPN GIELDPRGRIPVNTRFQTKIPNIYAIGDVV R G R T R F 0 2 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 1 911.5301 E9PEX6;P09622 E9PEX6 312 319 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.037235 65.252 By matching By MS/MS By matching 1 1 2 0.90304 0.97654 8.5521 4 Median 0.86776 0.87631 NaN 1 0 Median 1.1954 1.078 NaN 1 0 Median 0.90304 0.97654 2.155 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3760800 1884000 1876800 708430 376890 331540 2634200 1284500 1349700 418170 222580 195590 0 0 0 0 0 0 0 0 0 12253 915 12753 62147;62148;62149;62150 62441 62441 1 GRKPGSVVAAAAAEAK KRKAEADPQAIPKKRGRKPGSVVAAAAAEA RKPGSVVAAAAAEAKKKAVKESSIRSVQET R G R A K K 6 1 0 0 0 0 1 2 0 0 0 2 0 0 1 1 0 0 0 2 0 0 16 2 1481.8314 P51608;A0A087X1U4 P51608 269 284 MECP2 Methyl-CpG-binding protein 2 yes no 3 0.00028674 43.657 By MS/MS By MS/MS By MS/MS 2 2 2 0.85346 0.97174 19.002 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98172 0.99492 17.954 2 0 Median 0.83369 0.97174 NaN 1 0 Median 1.0656 0.97858 33.427 2 0 Median 6508200 3346300 3161900 0 0 0 0 0 0 0 0 0 902710 428350 474360 1869400 1174800 694690 3736100 1743200 1992900 12254 2437 12754 62151;62152;62153;62154;62155;62156 62442;62443;62444;62445 62445 4 GRLDSELR INNLRRQLDSIVGERGRLDSELRNMQDLVE DSIVGERGRLDSELRNMQDLVEDFKNKYED R G R L R N 0 2 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 1 944.50394 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__Q5XKE5;Q5XKE5 CON__P13647 238 245 KRT6A;KRT5;KRT6C;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 79 no no 2 0.0022157 101.43 By MS/MS By MS/MS By MS/MS 2 3 1 0.023653 0.025566 126.39 6 Median NaN NaN NaN 0 0 Median 0.17884 0.17222 62.691 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0211 0.022925 22.603 3 3 Median 0.010017 0.0087916 NaN 1 1 Median 25011000 23661000 1349800 0 0 0 6302900 5647500 655400 0 0 0 0 0 0 14242000 13668000 574320 4465700 4345600 120060 + 12255 757;741;748;766;786 12755 62157;62158;62159;62160;62161;62162 62446;62447;62448;62449;62450;62451 62451 6 GRLDYLSSLK QAFQGHGAGNLAGLKGRLDYLSSLKVKGLV LAGLKGRLDYLSSLKVKGLVLGPIHKNQKD K G R L K V 0 1 0 1 0 0 0 1 0 0 3 1 0 0 0 2 0 0 1 0 0 0 10 1 1150.6346 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2 F5GZS6 215 224 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.013997 58.433 By MS/MS 1 1.8797 1.9305 NaN 1 Median 1.8797 1.9305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11286000 4092300 7193500 11286000 4092300 7193500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12256 1016 12756 62163 62452 62452 1 GRLESAQATFQAHR DLEELSLGPRDAGTRGRLESAQATFQAHRD RGRLESAQATFQAHRDKYEKLRGDVAIKLK R G R H R D 3 2 0 0 0 2 1 1 1 0 1 0 0 1 0 1 1 0 0 0 0 0 14 1 1570.7964 A0A087X1E4;P53365 A0A087X1E4 289 302 ARFIP2 Arfaptin-2 yes no 3 1.2487E-07 116.19 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1999 1.1413 23.658 5 Median 1.0615 1.0942 10.494 2 0 Median 1.1999 1.1206 NaN 1 0 Median 1.8152 1.8605 NaN 1 0 Median 1.2965 1.1413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22062000 9403100 12659000 14972000 6343700 8628700 3675100 1652800 2022300 2265000 828600 1436400 1150100 577960 572100 0 0 0 0 0 0 12257 119 12757 62164;62165;62166;62167;62168 62453;62454;62455;62456;62457 62454 5 GRLNELMSQIR LDTIQGELNAPTQFKGRLNELMSQIRMQNH TQFKGRLNELMSQIRMQNHFGAVRSEERYY K G R I R M 0 2 1 0 0 1 1 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 11 1 1315.7031 Q7Z3B4 Q7Z3B4 429 439 NUP54 Nucleoporin p54 yes yes 3 0.052071 17.211 By MS/MS 1 0.57952 0.62592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57952 0.62592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1605500 1037700 567760 0 0 0 0 0 0 1605500 1037700 567760 0 0 0 0 0 0 0 0 0 12258 3239 12758 62169 62458 62458 1 GRPAPGFHHGDGPGNAVQEIMIPASK SVQSAKRLLDQIVEKGRPAPGFHHGDGPGN GPGNAVQEIMIPASKAGLVIGKGGETIKQL K G R S K A 3 1 1 1 0 1 1 5 2 2 0 1 1 1 4 1 0 0 0 1 0 0 26 1 2639.3027 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 171 196 FUBP1 Far upstream element-binding protein 1 no no 3;4;5 2.5923E-52 128.07 By MS/MS By MS/MS 6 9 0.64241 0.642 78.454 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56361 0.5994 120.37 6 1 Median 0.73371 0.6903 12.751 9 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 190150000 137420000 52732000 0 0 0 0 0 0 147880000 112880000 35003000 42271000 24541000 17729000 0 0 0 0 0 0 12259 3599;723 12759;12760 62170;62171;62172;62173;62174;62175;62176;62177;62178;62179;62180;62181;62182;62183;62184 62459;62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476 62460 254 18 GRPDLSTLTHSIVR AREKEMQEFTRSFFRGRPDLSTLTHSIVRR RGRPDLSTLTHSIVRRRYLAHSGRSHLEPE R G R V R R 0 2 0 1 0 0 0 1 1 1 2 0 0 0 1 2 2 0 0 1 0 0 14 1 1550.8529 Q9BW71 Q9BW71 17 30 HIRIP3 HIRA-interacting protein 3 yes yes 3 1.9621E-08 111.12 By MS/MS By matching 1 1 0.92679 1.0888 1.0027 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96877 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88663 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median 12920000 6201500 6718400 0 0 0 0 0 0 11304000 5423300 5880600 0 0 0 1616100 778240 837890 0 0 0 12260 3865 12761 62185;62186 62477;62478 62478 2 GRPHLSQSVVETLLTQLHSAQDAAR ATLKIALNCMVKLAKGRPHLSQSVVETLLT ETLLTQLHSAQDAARILMCHCLAAIAMQLP K G R A R I 3 2 0 1 0 3 1 1 2 0 4 0 0 0 1 3 2 0 0 2 0 0 25 1 2713.426 Q9NVH2 Q9NVH2 422 446 INTS7 Integrator complex subunit 7 yes yes 4 0.021076 14.064 By MS/MS 2 0.94051 0.91855 8.3145 2 Median NaN NaN NaN 0 0 Median 0.94051 0.91855 8.3145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2910700 1129700 1781100 0 0 0 2910700 1129700 1781100 0 0 0 0 0 0 0 0 0 0 0 0 12261 4131 12762 62187;62188 62479;62480 62480 2 GRPITMFIPSDVDNYDDIR VIINQEGEYIKMFMRGRPITMFIPSDVDNY TMFIPSDVDNYDDIRTELPPEKLKLEWAYG R G R I R T 0 2 1 4 0 0 0 1 0 3 0 0 1 1 2 1 1 0 1 1 0 0 19 1 2223.063 Q9HC35;B5MBZ0 Q9HC35 233 251 EML4 Echinoderm microtubule-associated protein-like 4 yes no 3 5.9457E-07 57.482 By MS/MS By matching By MS/MS 1 1 1 0.80022 0.92463 13.435 3 Median 0.7508 0.8159 NaN 1 0 Median 1.1386 1.0672 NaN 1 0 Median 0.80022 0.92463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6292300 3810500 2481800 4448600 2805100 1643400 306710 137770 168940 1537100 867640 669410 0 0 0 0 0 0 0 0 0 12262 4024 12763 62189;62190;62191 62481;62482 62481 2 GRPLAEESEQER LYNGLHRPLLGRLSRGRPLAEESEQERLLG LSRGRPLAEESEQERLLGGTRTPINDAS__ R G R E R L 1 2 0 0 0 1 4 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 12 1 1399.6692 Q8N357 Q8N357 347 358 SLC35F6 Solute carrier family 35 member F6 yes yes 3 1.2339E-06 106.49 By MS/MS By MS/MS By matching 3 3 1 1.0744 1.0628 14.885 7 Median 0.93476 0.99964 17.544 3 0 Median 1.1554 1.1139 5.013 3 0 Median 0.75818 0.83324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6294300 3021100 3273200 1061900 550690 511260 5143500 2420600 2722900 88816 49773 39042 0 0 0 0 0 0 0 0 0 12263 3365 12764 62192;62193;62194;62195;62196;62197;62198 62483;62484;62485;62486;62487;62488 62485 6 GRPLPEPYEASR MHRAPVVAIAVLDGRGRPLPEPYEASRDLA DGRGRPLPEPYEASRDLAQAPDMQGGHAVL R G R S R D 1 2 0 0 0 0 2 1 0 0 1 0 0 0 3 1 0 0 1 0 0 0 12 1 1370.6943 A0A087WW77;Q15334 A0A087WW77 795 806 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 3 0.059544 25.718 By MS/MS 1 0.38733 0.42091 NaN 1 Median 0.38733 0.42091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1912600 1559700 352900 1912600 1559700 352900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12264 55 12765 62199 62489 62489 1 GRPMVISSGMQSMDTMK GDTNNFPYLEKTAKKGRPMVISSGMQSMDT PMVISSGMQSMDTMKQVYQIVKPLNPNFCF K G R M K Q 0 1 0 1 0 1 0 2 0 1 0 1 4 0 1 3 1 0 0 1 0 0 17 1 1854.846 Q9NR45 Q9NR45 150 166 NANS Sialic acid synthase yes yes 2;3 7.5631E-12 152.99 By MS/MS By matching 2 1 1.0116 1.0839 23.384 3 Median 0.95715 1.0257 7.8077 2 0 Median 1.6276 1.5203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31355000 15379000 15975000 31095000 15272000 15823000 259430 107000 152440 0 0 0 0 0 0 0 0 0 0 0 0 12265 4079 12766 62200;62201;62202 62490;62491;62492;62493 62492 4 GRPPIATFSANPEAK AAPTTASAAPQGPLRGRPPIATFSANPEAK GRPPIATFSANPEAKAAAAPFQTSQASASA R G R A K A 3 1 1 0 0 0 1 1 0 1 0 1 0 1 3 1 1 0 0 0 0 0 15 1 1554.8154 Q96L91 Q96L91 1504 1518 EP400 E1A-binding protein p400 yes yes 2;3 8.8839E-05 69.431 By MS/MS By MS/MS 3 2 0.48269 0.50895 20.318 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47575 0.55224 19.349 3 0 Plateau 0.59162 0.56102 26.25 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44462000 30862000 13600000 0 0 0 0 0 0 41330000 28980000 12351000 3132100 1882600 1249500 0 0 0 0 0 0 12266 3700 12767 62203;62204;62205;62206;62207 62494;62495;62496;62497;62498 62494 5 GRPPKPLGGGTPK ENEDEQNSPPKKGKRGRPPKPLGGGTPKEE KRGRPPKPLGGGTPKEEPTMKTSKKGSKKK R G R P K E 0 1 0 0 0 0 0 4 0 0 1 2 0 0 4 0 1 0 0 0 0 0 13 2 1260.7303 Q9NTI5;A9IYQ1 Q9NTI5 1291 1303 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.037807 19.604 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 0.57027 0.63829 25.244 5 Median NaN NaN NaN 0 0 Median 0.75225 0.85717 NaN 1 0 Median 0.424 0.48314 NaN 1 0 Median 0.57027 0.63829 NaN 1 0 Median 0.39293 0.46194 NaN 1 0 Median 0.6864 0.65884 NaN 1 0 Median 1024800 684930 339890 0 0 0 67530 34517 33013 348160 232920 115240 81863 53846 28017 457570 325270 132300 69694 38378 31316 12267 4107 12768 62208;62209;62210;62211;62212 62499 62499 1 GRPTSTNPIASIFAWTR AAHGTVTRHYREHQKGRPTSTNPIASIFAW PTSTNPIASIFAWTRGLEHRGKLDGNQDLI K G R T R G 2 2 1 0 0 0 0 1 0 2 0 0 0 1 2 2 3 1 0 0 0 0 17 1 1873.9799 P48735;H0YL11 P48735 361 377 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 3 0.017929 20.368 By MS/MS By matching By matching By matching 2 2 1 1 0.77136 0.81801 53.42 6 Median 0.6828 0.70382 1.9909 2 0 Median 0.75407 0.73766 91.661 2 0 Median 0.8658 0.93742 NaN 1 0 Median 1.8058 1.6844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5528600 3098400 2430200 3559800 2161200 1398600 1298400 634490 663940 520830 263500 257320 149530 39193 110330 0 0 0 0 0 0 12268 2367 12769 62213;62214;62215;62216;62217;62218 62500 62500 1 GRPYDYNGPR RFDVSGYPTLKIFRKGRPYDYNGPREKYGI KIFRKGRPYDYNGPREKYGIVDYMIEQSGP K G R P R E 0 2 1 1 0 0 0 2 0 0 0 0 0 0 2 0 0 0 2 0 0 0 10 1 1193.5578 P13667;A0A499FI48 P13667 261 270 PDIA4 Protein disulfide-isomerase A4 yes no 2;3 0.01234 49.715 By MS/MS By MS/MS 2 3 1.5832 1.6233 49.646 3 Median 1.5832 1.6233 NaN 1 0 Median 1.6062 1.5225 70.015 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11446000 3917600 7528600 4491900 1603100 2888800 6954300 2314500 4639700 0 0 0 0 0 0 0 0 0 0 0 0 12269 1993 12770 62219;62220;62221;62222;62223 62501;62502;62503;62504 62504 4 GRPYTLSVALPGSILDNAQSPELR KRLEEEEAAAEKEDRGRPYTLSVALPGSIL LPGSILDNAQSPELRTYLAGQIARACAIFC R G R L R T 2 2 1 1 0 1 1 2 0 1 4 0 0 0 3 3 1 0 1 1 0 0 24 1 2553.3551 Q5T280 Q5T280 70 93 C9orf114 Putative methyltransferase C9orf114 yes yes 3 0.0088552 20.757 By MS/MS By MS/MS By matching 2 2 2 0.61586 0.67685 17.493 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64716 0.70879 4.1114 2 0 Median NaN NaN NaN 0 0 Median 0.61586 0.65804 1.579 2 0 Median 0.73995 0.65496 37.844 2 0 Median 11670000 7204400 4465700 0 0 0 0 0 0 7302700 4658500 2644200 0 0 0 3526000 2074800 1451200 841380 471050 370330 12270 3083 12771 62224;62225;62226;62227;62228;62229 62505;62506;62507 62507 3 GRSEADSDKNATILELR EELRNLRLEYDDLRRGRSEADSDKNATILE SEADSDKNATILELRSQLQISNNRTLELQG R G R L R S 2 2 1 2 0 0 2 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 17 2 1873.9494 P15924 P15924 1737 1753 DSP Desmoplakin yes yes 3 0.00030315 38.417 By matching By MS/MS 1 1 0.66456 0.74257 17.824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57543 0.65464 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76749 0.84232 NaN 1 0 Median NaN NaN NaN 0 0 Median 9267400 6339700 2927700 0 0 0 0 0 0 3699700 2693900 1005900 0 0 0 5567600 3645800 1921800 0 0 0 12271 2021 12772 62230;62231 62508;62509 62508 2 GRTPSAFPQTPAAPPATLGEGSADTEDR LPGHAAKTLPGGAGKGRTPSAFPQTPAAPP PPATLGEGSADTEDRKLPAPGADVKVHRAR K G R D R K 5 2 0 2 0 1 2 3 0 0 1 0 0 1 5 2 4 0 0 0 0 0 28 1 2796.3315 Q9H9B1;A0A1B0GV09;A0A1B0GU48;A0A1B0GUD1;A0A1B0GVZ8;A0A0D9SFX4;A0A0D9SEQ1;A0A1B0GW79;A0A1B0GV89 Q9H9B1 162 189 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 3 3.1939E-09 50.294 By MS/MS 1 0.34351 0.41778 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34351 0.41778 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7533500 5789000 1744500 0 0 0 0 0 0 7533500 5789000 1744500 0 0 0 0 0 0 0 0 0 12272 3997 12773 62232 62510 62510 1 GRVEDVVVSDECR TLIIEHKFIHSCAKRGRVEDVVVSDECRGK KRGRVEDVVVSDECRGKQLGKLLLSTLTLL R G R C R G 0 2 0 2 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 4 0 0 13 1 1518.7097 Q96EK6;G3V4W4;G3V5E4 Q96EK6 117 129 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase yes no 3 0.05936 23.456 By MS/MS 1 0.46311 0.42366 NaN 1 Median NaN NaN NaN 0 0 Median 0.46311 0.42366 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 711690 475180 236510 0 0 0 711690 475180 236510 0 0 0 0 0 0 0 0 0 0 0 0 12273 1117 12774 62233 62511 62511 1 GSADNVTVMVVR YEAACNRLANKAVQRGSADNVTVMVVRIGH VQRGSADNVTVMVVRIGH____________ R G S V R I 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 4 0 0 12 0 1246.634 Q9H0C8;F8SNU7 Q9H0C8 378 389 ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2 3.1533E-06 147.75 By matching By MS/MS By MS/MS 1 2 1 1.1495 1.0861 3.4002 4 Median NaN NaN NaN 0 0 Median 1.2331 1.0582 NaN 1 0 Median 1.05 1.0817 4.263 2 0 Median 1.2997 1.12 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36246000 15970000 20275000 0 0 0 1175500 488680 686800 25194000 11550000 13644000 9876300 3931800 5944500 0 0 0 0 0 0 12274 3923 12775 62234;62235;62236;62237 62512;62513;62514;62515 62513 4 GSAIDEDIVTR YRHVKMCVRAEMRARGSAIDEDIVTRVAEE MRARGSAIDEDIVTRVAEEMTFFPRDEKIY R G S T R V 1 1 0 2 0 0 1 1 0 2 0 0 0 0 0 1 1 0 0 1 0 0 11 0 1174.583 O14657 O14657 296 306 TOR1B Torsin-1B yes yes 2 0.008052 59.426 By MS/MS 1 0.72805 0.72596 NaN 1 Median 0.72805 0.72596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3197600 1915100 1282500 3197600 1915100 1282500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12275 1487 12776 62238 62516 62516 1 GSAITGPVAK EDNAGVIVNNKGEMKGSAITGPVAKECADL KGEMKGSAITGPVAKECADLWPRIASNAGS K G S A K E 2 0 0 0 0 0 0 2 0 1 0 1 0 0 1 1 1 0 0 1 0 0 10 0 899.50763 P62829;J3KTJ3 P62829 114 123 RPL23 60S ribosomal protein L23 yes no 2 0.0061836 49.423 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.0954 0.93928 9.0727 6 Median NaN NaN NaN 0 0 Median 1.0164 0.85358 8.4151 2 0 Median 1.0138 0.97342 NaN 1 0 Median 1.134 0.91779 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2504 1.0074 6.6311 2 0 Median 31571000 15112000 16459000 0 0 0 19174000 9216200 9957300 7825100 3803100 4021900 3135600 1440300 1695300 0 0 0 1436500 652480 784020 12276 2598 12777 62239;62240;62241;62242;62243;62244 62517;62518;62519;62520;62521 62521 5 GSAPPGPVPEGSIR ______________________________ KGSAPPGPVPEGSIRIYSMRFCPFAERTRL K G S I R I 1 1 0 0 0 0 1 3 0 1 0 0 0 0 4 2 0 0 0 1 0 0 14 0 1319.6834 P78417 P78417 12 25 GSTO1 Glutathione S-transferase omega-1 yes yes 2 0.00020957 77.64 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.51099 0.49502 37.937 6 Median 0.43737 0.44034 43.552 2 1 Median 0.77689 0.65832 10.794 2 0 Median 0.42574 0.40898 NaN 1 0 Median 0.33833 0.28077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135750000 72546000 63200000 86512000 41753000 44759000 28998000 16487000 12511000 15594000 10566000 5027700 4642200 3740200 902040 0 0 0 0 0 0 12277 2646 12778 62245;62246;62247;62248;62249;62250 62522;62523;62524;62525;62526;62527;62528 62524 7 GSATNYITR ______________________________ KKKYERGSATNYITRNKARKKLQLSLADFR R G S T R N 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 2 0 1 0 0 0 9 0 981.48796 B5MCF9;O00541 B5MCF9 12 20 PES1 Pescadillo homolog yes no 2 0.0021327 87.639 By MS/MS By MS/MS 1 2 1.8083 1.5576 73.358 3 Median NaN NaN NaN 0 0 Median 0.52078 0.45059 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.915 1.6038 4.1357 2 2 Median 13776000 9200800 4575100 0 0 0 9877000 8018800 1858300 0 0 0 0 0 0 0 0 0 3898900 1182100 2716800 12278 618 12779 62251;62252;62253 62529;62530;62531 62529 3 GSAVHQLSEELR PDPDTGLYMLQLAGRGSAVHQLSEELRCAL AGRGSAVHQLSEELRCALRDARVTPGSGAL R G S L R C 1 1 0 0 0 1 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1324.6735 P58107;A0A075B730 P58107 2421 2432 EPPK1 Epiplakin yes no 2;3 9.4512E-22 199.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 9 3 3 6 10 1.3779 1.2484 17.811 39 Median 1.2839 1.2277 9.0467 9 1 Median 1.5066 1.2821 20.421 9 3 Median 1.273 1.3753 19.299 3 0 Median 1.4525 1.2647 10.374 3 0 Median 1.3779 1.4047 5.5529 5 1 Median 1.4142 1.1578 22.21 10 3 Median 1711100000 728810000 982340000 580310000 249830000 330480000 975700000 416040000 559670000 15221000 6046100 9175400 5765100 1855000 3910200 74026000 30070000 43956000 60117000 24968000 35149000 12279 2520 12780 62254;62255;62256;62257;62258;62259;62260;62261;62262;62263;62264;62265;62266;62267;62268;62269;62270;62271;62272;62273;62274;62275;62276;62277;62278;62279;62280;62281;62282;62283;62284;62285;62286;62287;62288;62289;62290;62291;62292;62293;62294 62532;62533;62534;62535;62536;62537;62538;62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550;62551;62552;62553;62554;62555;62556;62557;62558;62559;62560;62561;62562;62563;62564;62565;62566;62567;62568;62569;62570;62571;62572;62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585 62560 54 GSAVVGQYQSYSEQVR RHKLQVFQALRGLQRGSAVVGQYQSYSEQV SAVVGQYQSYSEQVRRELQKPDSFHSLTPT R G S V R R 1 1 0 0 0 3 1 2 0 0 0 0 0 0 0 3 0 0 2 3 0 0 16 0 1756.838 R4GMU1;O95479 R4GMU1 317 332 H6PD GDH/6PGL endoplasmic bifunctional protein;Glucose 1-dehydrogenase;6-phosphogluconolactonase yes no 2 1.106E-10 109.24 By MS/MS 1 0.92756 0.89967 NaN 1 Median 0.92756 0.89967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3453600 1864900 1588700 3453600 1864900 1588700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12280 1776 12781 62295 62586 62586 1 GSAYGLSGADSYKDAVR IEAQVRLKGAGLGAKGSAYGLSGADSYKDA AYGLSGADSYKDAVRKAMFARFTEME____ K G S V R K 3 1 0 2 0 0 0 3 0 0 1 1 0 0 0 3 0 0 2 1 0 0 17 1 1715.8115 P52756 P52756 788 804 RBM5 RNA-binding protein 5 yes yes 3 0.014416 32.091 By MS/MS 1 1.1269 1.2392 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1269 1.2392 NaN 1 1 Median NaN NaN NaN 0 0 Median 5162700 2172400 2990300 0 0 0 0 0 0 0 0 0 0 0 0 5162700 2172400 2990300 0 0 0 12281 2457 12782 62296 62587 62587 1 GSCGIGGGIGGGSSR MTTCSRQFTSSSSMKGSCGIGGGIGGGSSR GSCGIGGGIGGGSSRISSVLAGGSCRAPST K G S S R I 0 1 0 0 1 0 0 8 0 2 0 0 0 0 0 3 0 0 0 0 0 0 15 0 1277.5782 CON__P08779;P08779;K7ENV3;P02533;CON__P02533 P02533 16 30 KRT16;KRT14 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2 0.0274 38.634 By MS/MS 1 0.13192 0.1067 NaN 1 Median NaN NaN NaN 0 0 Median 0.13192 0.1067 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 518980 488260 30721 0 0 0 518980 488260 30721 0 0 0 0 0 0 0 0 0 0 0 0 + 12282 739;754 12783 62297 62588 62588 1 GSDASGQLFHGR NGDLSPFSGTSLRERGSDASGQLFHGRARE RERGSDASGQLFHGRAREGSFESRYQQPFE R G S G R A 1 1 0 1 0 1 0 3 1 0 1 0 0 1 0 2 0 0 0 0 0 0 12 0 1230.5741 P19174;V9GY71;V9GYH5 P19174 1232 1243 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 2;3 4.4889E-06 103.55 By MS/MS 3 1.6151 1.3784 22.768 3 Plateau NaN NaN NaN 0 0 Median 1.6151 1.3784 22.768 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5064500 2181100 2883400 0 0 0 5064500 2181100 2883400 0 0 0 0 0 0 0 0 0 0 0 0 12283 2062 12784 62298;62299;62300 62589;62590;62591 62590 3 GSDFDCELR LESDAVECLNYQHYKGSDFDCELRLLIHQS NYQHYKGSDFDCELRLLIHQSLAGGIIGVK K G S L R L 0 1 0 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1097.4448 P61978;Q5T6W2 P61978 140 148 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 0.00064678 107.29 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0854 1.0796 8.2002 5 Median NaN NaN NaN 0 0 Median 1.44 1.2159 NaN 1 0 Median 1.0191 1.0637 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.006 1.0369 5.7109 2 0 Median 1.3743 1.1855 NaN 1 0 Median 40771000 18879000 21892000 0 0 0 6752900 2749000 4003900 3362600 1681100 1681500 0 0 0 27848000 13359000 14489000 2807600 1089800 1717700 12284 2565;3093 12785 62301;62302;62303;62304;62305 62592;62593;62594;62595;62596;62597 62594 6 GSDGAASSYQLK LTTDLEILKAEIEEKGSDGAASSYQLKQLE EEKGSDGAASSYQLKQLEEQNARLKDALVR K G S L K Q 2 0 0 1 0 1 0 2 0 0 1 1 0 0 0 3 0 0 1 0 0 0 12 0 1182.5517 E7EX90;Q14203;Q6AWB1 E7EX90 333 344 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.00057479 74.772 By MS/MS 1 1.1993 1.0343 NaN 1 Median NaN NaN NaN 0 0 Median 1.1993 1.0343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3728800 1798400 1930400 0 0 0 3728800 1798400 1930400 0 0 0 0 0 0 0 0 0 0 0 0 12285 906 12786 62306 62598 62598 1 GSDHSASLEPGELAELVR AKVLERHITLDKTWKGSDHSASLEPGELAE HSASLEPGELAELVRSVRLVERALGSPTKQ K G S V R S 2 1 0 1 0 0 3 2 1 0 3 0 0 0 1 3 0 0 0 1 0 0 18 0 1865.9119 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 247 264 NANS Sialic acid synthase yes no 3 1.344E-05 49.537 By MS/MS By matching By matching By matching 1 1 1 1 0.95247 0.90879 5.1279 4 Median 0.90035 0.89612 NaN 1 0 Median 1.0778 0.92163 NaN 1 0 Median 0.89395 0.96958 NaN 1 0 Median 1.0076 0.85794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17222000 8924900 8297000 9539300 4998600 4540700 1362800 606990 755830 6238900 3286300 2952600 80832 32896 47936 0 0 0 0 0 0 12286 4079 12787 62307;62308;62309;62310 62599;62600 62600 2 GSDIIIVGR LGQQYNSPQEVIGKRGSDIIIVGRGIISAA EVIGKRGSDIIIVGRGIISAADRLEAAEMY R G S G R G 0 1 0 1 0 0 0 2 0 3 0 0 0 0 0 1 0 0 0 1 0 0 9 0 928.53418 P11172 P11172 443 451 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 2 0.012368 46.426 By matching By MS/MS By matching 1 1 1 1.2259 1.0572 13.328 3 Median 1.3402 1.3128 NaN 1 0 Median 1.2048 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2259 1.0572 NaN 1 0 Median 11370000 4873000 6497300 5292100 2449300 2842800 3151300 1398300 1753000 0 0 0 0 0 0 0 0 0 2926800 1025300 1901500 12287 1953 12788 62311;62312;62313 62601;62602 62601 2 GSDQAIITLR EADPGQYRCNGTSSKGSDQAIITLRVRSHL GTSSKGSDQAIITLRVRSHLAALWPFLGIV K G S L R V 1 1 0 1 0 1 0 1 0 2 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1072.5877 P35613;A0A087WUV8;A0A087X2B5 P35613 308 317 BSG Basigin yes no 2 0.0026285 73.233 By MS/MS By MS/MS 1 1 1.2324 1.0958 8.7518 2 Median 1.2398 1.1657 NaN 1 1 Median 1.225 1.03 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44080000 19922000 24158000 30370000 13781000 16589000 13710000 6141500 7568600 0 0 0 0 0 0 0 0 0 0 0 0 12288 2249 12789 62314;62315 62603;62604;62605 62603 3 GSDQNASLYWLAR EEHYNCISALHKSMRGSDQNASLYWLARML MRGSDQNASLYWLARMLEGGEDPLYVARRL R G S A R M 2 1 1 1 0 1 0 1 0 0 2 0 0 0 0 2 0 1 1 0 0 0 13 0 1479.7106 Q96S55 Q96S55 512 524 WRNIP1 ATPase WRNIP1 yes yes 2 0.00040564 85.256 By MS/MS 2 0.87559 0.82159 11.079 2 Median 0.87559 0.82159 11.079 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12379000 6689200 5689700 12379000 6689200 5689700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12289 3730 12790 62316;62317 62606;62607 62607 2 GSDVASAQLPNFR PFQDGYDLTIGTSERGSDVASAQLPNFRHA ERGSDVASAQLPNFRHALVVFGGLQGLEAG R G S F R H 2 1 1 1 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1360.6735 Q5T280;R4GNG4 Q5T280 293 305 C9orf114 Putative methyltransferase C9orf114 yes no 2 5.2241E-07 107.15 By MS/MS By MS/MS By MS/MS 2 1 2 1.1316 1.0658 6.3364 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1576 1.1359 0.26567 2 1 Median 1.1316 0.98415 NaN 1 0 Median 1.0066 1.0448 2.8203 2 0 Median NaN NaN NaN 0 0 Median 60658000 27701000 32957000 0 0 0 0 0 0 47482000 21366000 26115000 2956800 1384100 1572700 10219000 4950200 5269100 0 0 0 12290 3083 12791 62318;62319;62320;62321;62322 62608;62609;62610;62611 62609 4 GSDVIIMLVGNK FQQTTKWIDDVRTERGSDVIIMLVGNKTDL TERGSDVIIMLVGNKTDLADKRQVSIEEGE R G S N K T 0 0 1 1 0 0 0 2 0 2 1 1 1 0 0 1 0 0 0 2 0 0 12 0 1244.6799 P20340;Q9NRW1;J3KR73;C9JU14 P20340 116 127 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 2 0.00060052 70.816 By MS/MS By matching By matching By matching 1 1 2 1 1.2002 1.0916 15.818 5 Median 1.3727 1.2808 NaN 1 0 Median 1.1505 1.0049 NaN 1 0 Median 1.0592 1.1545 26.181 2 0 Median 1.2002 1.0916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15301000 6404100 8896500 11200000 4463500 6736900 324410 134640 189770 2929000 1417400 1511600 846810 388620 458190 0 0 0 0 0 0 12291 2079;4089 12792 62323;62324;62325;62326;62327 62612;62613 62612 2 GSEAAQLLEAADFAAR ______________________________ SEAAQLLEAADFAARKHRQQRRKDPEGTPY M G S A R K 6 1 0 1 0 1 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 16 0 1618.7951 H0YNP9;Q8N4P3 H0YNP9 2 17 HDDC3 Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase MESH1 yes no 2 0.00029579 48.741 By MS/MS 1 0.83363 0.78586 NaN 1 Median 0.83363 0.78586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1853400 973300 880050 1853400 973300 880050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12292 1204 12793 62328 62614;62615 62614 2 GSEEELADIK KISLEDIQAFEKTYKGSEEELADIKQAYLD EKTYKGSEEELADIKQAYLDFKGDMDQIME K G S I K Q 1 0 0 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1089.519 Q8WXX5 Q8WXX5 122 131 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.0037749 55.549 By MS/MS By matching By matching 1 1 2 1.1246 0.98555 23.145 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88072 0.84824 NaN 1 0 Median 0.9099 0.76173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4336 1.1875 5.1419 2 0 Median 34777000 18223000 16554000 0 0 0 0 0 0 18386000 9555100 8831300 13613000 7448400 6164600 0 0 0 2777700 1219800 1557900 12293 3522 12794 62329;62330;62331;62332 62616;62617 62617 2 GSEENLDEAR RELEEYRREVERKQKGSEENLDEAREQKEK ERKQKGSEENLDEAREQKEKSPPDQPAVPH K G S A R E 1 1 1 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1118.484 E7EV99;E7ENY0;P35611;H0Y9H2;H0YG19 E7EV99 585 594 ADD1 Alpha-adducin yes no 2 0.0087066 46.158 By MS/MS By matching By MS/MS 1 1 2 0.92286 0.96089 9.4312 4 Median 0.94924 0.95946 NaN 1 0 Median 1.3101 1.1283 NaN 1 0 Median 0.88045 0.93366 4.2746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5147500 2448800 2698700 751580 385650 365920 1647000 538000 1109000 2749000 1525100 1223800 0 0 0 0 0 0 0 0 0 12294 866 12795 62333;62334;62335;62336 62618;62619;62620 62620 3 GSEGKPSLTLPASAPGPEEALTTVTVAPAPR PRFRRLKQERENAARGSEGKPSLTLPASAP PEEALTTVTVAPAPRRAAAKSPDLSNQNSD R G S P R R 5 1 0 0 0 0 3 3 0 0 3 1 0 0 6 3 4 0 0 2 0 0 31 1 3000.5768 P48634 P48634 1270 1300 PRRC2A Protein PRRC2A yes yes 3 1.168E-14 61.89 By MS/MS 1 0.36109 0.36349 NaN 1 Median 0.36109 0.36349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8037000 6807000 1230000 8037000 6807000 1230000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12295 2363 12796 62337 62621 62621 1 GSEHQAIVQHLEK LHQDLVNRKARKLRKGSEHQAIVQHLEKSF RKGSEHQAIVQHLEKSFAIASLVETGHLAA K G S E K S 1 0 0 0 0 2 2 1 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1474.7528 Q14690;A0A3B3IUD7 Q14690 925 937 PDCD11 Protein RRP5 homolog yes no 3 0.0010769 42.317 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.2673 1.1886 21.354 6 Median NaN NaN NaN 0 0 Median 1.1522 1.0006 NaN 1 0 Median 0.68034 0.72521 NaN 1 0 Median 1.3938 1.2635 NaN 1 0 Median 1.1785 1.2442 NaN 1 0 Median 1.4048 1.1886 2.4846 2 0 Median 8198400 3529000 4669300 0 0 0 813420 377260 436150 735210 279510 455700 1776800 763500 1013300 2600200 1203300 1396900 2272700 905470 1367200 12296 448 12797 62338;62339;62340;62341;62342;62343 62622;62623;62624;62625;62626;62627 62625 6 GSELEITLTR SPSDKVLIQEKTQLKGSELEITLTRGSSLP KTQLKGSELEITLTRGSSLPGPACAYVNLN K G S T R G 0 1 0 0 0 0 2 1 0 1 2 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 P41252;A0A0A0MSX9;J3KR24;Q5TCC6 P41252 1062 1071 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0010947 85.862 By MS/MS By MS/MS By MS/MS 1 1 1 1.4468 1.2322 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4468 1.2322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1960600 785430 1175200 0 0 0 0 0 0 0 0 0 1960600 785430 1175200 0 0 0 0 0 0 12297 2302 12798 62344;62345;62346 62628;62629;62630 62628 3 GSELQNYFTK YDDPPDWQEILTYFRGSELQNYFTKILEDD LTYFRGSELQNYFTKILEDDLKAIIKPQYV R G S T K I 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1185.5666 P61221;D6R9I9;D6RGF4;H0Y990 P61221 149 158 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.0015287 64.711 By MS/MS 1 1.4063 1.316 NaN 1 Median 1.4063 1.316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16727000 7272800 9453900 16727000 7272800 9453900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12298 2550 12799 62347 62631;62632 62632 2 GSEVGFHGAAPDISVK PTGQISGPEIKGGLKGSEVGFHGAAPDISV SEVGFHGAAPDISVKGPAFNMASPESDFGI K G S V K G 2 0 0 1 0 0 1 3 1 1 0 1 0 1 1 2 0 0 0 2 0 0 16 0 1569.7787 Q09666 Q09666 5529 5544 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 8.9488E-11 131.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 5 12 1 2 1.2143 1.0926 14.444 24 Median 1.4149 1.4205 10.93 3 2 Median 1.4508 1.2689 NaN 1 1 Median 1.1601 1.2391 7.997 5 0 Median 1.1965 1.0504 10.863 12 0 Median 1.0509 1.1015 NaN 1 0 Median 1.2507 1.0568 0.90152 2 0 Median 261660000 116560000 145100000 59901000 24725000 35175000 5979800 2349900 3629900 113180000 52653000 60530000 75172000 33631000 41541000 5274000 2277100 2996900 2153700 926750 1226900 12299 2749 12800 62348;62349;62350;62351;62352;62353;62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364;62365;62366;62367;62368;62369;62370;62371 62633;62634;62635;62636;62637;62638;62639;62640;62641;62642;62643;62644;62645;62646;62647;62648;62649;62650;62651;62652;62653;62654;62655;62656;62657;62658 62636 26 GSFMLGLETHDR DLSEKLEQSEAQLGRGSFMLGLETHDRKSE LGRGSFMLGLETHDRKSEDKLAKATRDSCK R G S D R K 0 1 0 1 0 0 1 2 1 0 2 0 1 1 0 1 1 0 0 0 0 0 12 0 1361.6398 Q92905 Q92905 283 294 COPS5 COP9 signalosome complex subunit 5 yes yes 2 0.00060982 68.893 By MS/MS By MS/MS By matching 1 1 1 1.0829 0.91185 9.0457 3 Median 0.83345 0.78329 NaN 1 0 Median 1.1037 0.9201 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0829 0.91185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11214000 5223600 5990800 5993400 2969900 3023600 4959800 2127800 2832000 0 0 0 261210 125990 135220 0 0 0 0 0 0 12300 3565 12801 62372;62373;62374 62659;62660 62659 2 GSFQVTR ISDEDWDIIHRVHLRGSFQVTRAAWEHMKK IIHRVHLRGSFQVTRAAWEHMKKQKYGRII R G S T R A 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 7 0 793.40825 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 126 132 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.052693 51.787 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1358800 0 1358800 0 0 0 1358800 0 1358800 0 0 0 0 0 0 0 0 0 0 0 0 12301 393 12802 62375 62661 62661 1 GSFSDTGLGDGK EQKQTNTDKEKIKEKGSFSDTGLGDGKMKS KEKGSFSDTGLGDGKMKSDSFAPKTDSEKP K G S G K M 0 0 0 2 0 0 0 4 0 0 1 1 0 1 0 2 1 0 0 0 0 0 12 0 1139.5095 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 376 387 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0028799 47.559 By matching By MS/MS 1 2 1.2683 1.0866 25.959 3 Median NaN NaN NaN 0 0 Median 1.2683 1.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2839 1.3296 32.804 2 0 Median NaN NaN NaN 0 0 Median 19123000 8114500 11008000 0 0 0 4600200 1704000 2896200 0 0 0 0 0 0 14523000 6410500 8112100 0 0 0 12302 439 12803 62376;62377;62378 62662 62662 1 GSFSEQGINEFLR MAAINARKMKFALLKGSFSEQGINEFLREL LKGSFSEQGINEFLRELSFGRGSTAPVGGG K G S L R E 0 1 1 0 0 1 2 2 0 1 1 0 0 2 0 2 0 0 0 0 0 0 13 0 1482.7103 Q15084 Q15084 374 386 PDIA6 Protein disulfide-isomerase A6 yes yes 2 6.8856E-16 148.32 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.2227 1.1381 17.236 8 Median 1.1633 1.1191 4.1192 2 0 Median 1.2959 1.1076 4.8148 2 0 Median 1.1451 1.126 0.53587 2 2 Median NaN NaN NaN 0 0 Median 1.7876 1.8026 NaN 1 1 Median 1.5217 1.3143 NaN 1 0 Median 163380000 74052000 89326000 62937000 28533000 34404000 67543000 30593000 36950000 29614000 13740000 15874000 0 0 0 2694900 938890 1756000 589000 246790 342210 12303 2927 12804 62379;62380;62381;62382;62383;62384;62385;62386 62663;62664;62665;62666;62667;62668;62669;62670;62671;62672 62667 10 GSFSQADVHR EDIEVYFTGPGWEARGSFSQADVHRQVAIV GWEARGSFSQADVHRQVAIVFRTPPYADPS R G S H R Q 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 2 0 0 0 1 0 0 10 0 1102.5156 Q2TAM5;E9PKH5;A0A087X0W8;Q04206 Q2TAM5 237 246 RELA Transcription factor p65 yes no 2 0.0066695 48.794 By matching By MS/MS 1 1 1.0426 0.96621 38.466 2 Median 1.2782 1.2682 NaN 1 0 Median 0.85036 0.73611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2712600 1257200 1455400 572750 200580 372170 2139900 1056700 1083200 0 0 0 0 0 0 0 0 0 0 0 0 12304 114 12805 62387;62388 62673 62673 1 GSFSSENYWR EENRRSVLLPTHRRRGSFSSENYWRKSYES THRRRGSFSSENYWRKSYESSEDCSEAAGS R G S W R K 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 3 0 1 1 0 0 0 10 0 1231.5258 Q6P6C2;K7ER58 Q6P6C2 360 369 ALKBH5 RNA demethylase ALKBH5 yes no 2 0.0034879 56.563 By MS/MS By matching 1 1 1.472 1.375 4.4919 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4144 1.4194 NaN 1 0 Median 1.5319 1.332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8046400 2907700 5138800 0 0 0 0 0 0 4769100 1783500 2985600 3277400 1124200 2153100 0 0 0 0 0 0 12305 3163 12806 62389;62390 62674 62674 1 GSGDPSSSSSSGNPLVYLDVDANGKPLGR RSVPLRLPAARACSKGSGDPSSSSSSGNPL LVYLDVDANGKPLGRVVLELKADVVPKTAE K G S G R V 1 1 2 3 0 0 0 5 0 0 3 1 0 0 3 7 0 0 1 2 0 0 29 1 2832.3526 P30405;R4GN99 P30405 33 61 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase yes no 3 6.0002E-14 52.971 By matching By MS/MS By matching 1 1 1 0.77471 0.69761 7.4458 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77471 0.79354 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6182 0.69745 NaN 1 0 Median 0.87189 0.69761 NaN 1 0 Median 8823100 4974600 3848500 0 0 0 0 0 0 1192100 562990 629150 0 0 0 7384100 4260900 3123100 246860 150670 96185 12306 2192 12807 62391;62392;62393 62675 62675 1 GSGGEWKGPQVSSALNLDTSK SAPDISLGEGHLSVKGSGGEWKGPQVSSAL KGPQVSSALNLDTSKFAGGLHFSGPKVEGG K G S S K F 1 0 1 1 0 1 1 4 0 0 2 2 0 0 1 4 1 1 0 1 0 0 21 1 2117.0389 Q09666 Q09666 5592 5612 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0083875 22.409 By MS/MS By matching By MS/MS 1 1 1 1.0263 1.1653 44.263 3 Median 0.55776 0.60751 NaN 1 0 Median 1.6195 1.4141 NaN 1 0 Median 1.0263 1.1653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20152000 11649000 8502700 14397000 8647100 5750000 599880 281390 318490 5154700 2720500 2434200 0 0 0 0 0 0 0 0 0 12307 2749 12808 62394;62395;62396 62676;62677 62677 2 GSGGGGPASASGPAASESRPLPR TASAIVSPHGDESPRGSGGGGPASASGPAA SASGPAASESRPLPRVHRARGAPRQQGPGT R G S P R V 4 2 0 0 0 0 1 6 0 0 1 0 0 0 4 5 0 0 0 0 0 0 23 1 2021.9879 Q9Y6J9 Q9Y6J9 504 526 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 3 0.027617 13.682 By MS/MS By matching 1 1 0.64509 0.70843 34.695 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49673 0.55431 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83778 0.9054 NaN 1 0 Median NaN NaN NaN 0 0 Median 5150100 3196700 1953400 0 0 0 0 0 0 2392500 1634500 758010 0 0 0 2757600 1562200 1195400 0 0 0 12308 4494 12809 62397;62398 62678 62678 1 GSGGGSSGGSIGGRGSSSGGVK RGGSGGGGGGSSGGRGSGGGSSGGSIGGRG GGSIGGRGSSSGGVKSSGGSSSVKFVSTTY R G S V K S 0 1 0 0 0 0 0 11 0 1 0 1 0 0 0 7 0 0 0 1 0 0 22 1 1750.8194 P04264;CON__P04264 P04264 603 624 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.067849 15.241 By MS/MS 1 0.2438 0.22743 NaN 1 Median NaN NaN NaN 0 0 Median 0.2438 0.22743 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 723150 684280 38868 0 0 0 723150 684280 38868 0 0 0 0 0 0 0 0 0 0 0 0 + 12309 1848 12810 62399 62679 62679 1 GSGGLFSPSTAHVPDGALGQR SLGEGSRDAGRPGERGSGGLFSPSTAHVPD SPSTAHVPDGALGQRDQSSWQNSDASQEVG R G S Q R D 2 1 0 1 0 1 0 5 1 0 2 0 0 1 2 3 1 0 0 1 0 0 21 0 2009.9919 Q9C0C2 Q9C0C2 1023 1043 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 3 0.00064774 43.696 By MS/MS 1 0.84728 0.92653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84728 0.92653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9297000 4656200 4640700 0 0 0 0 0 0 9297000 4656200 4640700 0 0 0 0 0 0 0 0 0 12310 3903 12811 62400 62680 62680 1 GSGGTAEHPFTVEEFVLPK SSEPFQGSYKVVVQKGSGGTAEHPFTVEEF TAEHPFTVEEFVLPKFEVQVRMPKIITILE K G S P K F 1 0 0 0 0 0 3 3 1 0 1 1 0 2 2 1 2 0 0 2 0 0 19 0 2000.9844 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 210 228 yes yes 2;3 2.4139E-20 111.63 By MS/MS 3 0.073035 0.071964 42.737 2 Median 0.073035 0.071964 42.737 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32383000 30820000 1562500 32383000 30820000 1562500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12311 734 12812 62401;62402;62403 62681;62682;62683 62682 3 GSGHSESSDSEVHSGGSHTHSGHTHGQSGSQHGESESIIHDR HGKSTQRGSSTTGRRGSGHSESSDSEVHSG SGSQHGESESIIHDRHRITHGQTGDTTRHS R G S D R H 0 1 0 2 0 2 4 8 8 2 0 0 0 0 0 12 2 0 0 1 0 0 42 0 4300.8123 CON__Q5D862;Q5D862 CON__Q5D862 1498 1539 FLG2 Filaggrin-2 yes no 4 0.065479 1.4791E-11 By MS/MS 1 14.011 13.735 NaN 1 Median 14.011 13.735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 472230 8949.2 463280 472230 8949.2 463280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12312 785 12813 62404 62684 62684 1 GSGIFDESTPVQTR EPQNIPKRTNPPGGKGSGIFDESTPVQTRQ KGSGIFDESTPVQTRQHLNPPGGKTSDIFG K G S T R Q 0 1 0 1 0 1 1 2 0 1 0 0 0 1 1 2 2 0 0 1 0 0 14 0 1492.7158 H3BMT0;H3BTV5;H3BU16;A6NGP5;H3BMV3;Q9H910 H3BMT0 52 65 HN1L Hematological and neurological expressed 1-like protein yes no 2 7.3005E-06 129.89 By MS/MS By MS/MS By MS/MS 1 1 1 0.87543 0.83171 29.262 3 Median 0.87543 0.83171 NaN 1 0 Median 0.65681 0.55796 NaN 1 0 Median 1.0274 0.98686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44750000 22129000 22622000 24070000 11872000 12197000 1732800 903280 829540 18948000 9353300 9594600 0 0 0 0 0 0 0 0 0 12313 514 12814 62405;62406;62407 62685;62686;62687;62688 62685 4 GSGIQWDLR AEEALNYGFSGVMLRGSGIQWDLRKTQPYD SGVMLRGSGIQWDLRKTQPYDVYDQVEFDV R G S L R K 0 1 0 1 0 1 0 2 0 1 1 0 0 0 0 1 0 1 0 0 0 0 9 0 1030.5196 O75306 O75306 295 303 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2 0.0045216 60.436 By MS/MS By matching By matching By matching 1 1 1 1 0.98956 0.92825 29.85 4 Median 1.0457 1.031 NaN 1 0 Median 1.8207 1.5544 NaN 1 0 Median 0.83272 0.83577 NaN 1 0 Median 0.93646 0.81555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11706000 6110600 5595400 4554800 2236500 2318300 1451200 573530 877700 4129700 2559900 1569700 1570400 740660 829700 0 0 0 0 0 0 12314 1657 12815 62408;62409;62410;62411 62689 62689 1 GSGNLEAIHIIK DHFTKLAVEAVLRLKGSGNLEAIHIIKKLG RLKGSGNLEAIHIIKKLGGSLADSYLDEGF K G S I K K 1 0 1 0 0 0 1 2 1 3 1 1 0 0 0 1 0 0 0 0 0 0 12 0 1250.6983 P78371;F5GWF6;F8VQ14 P78371 192 203 CCT2 T-complex protein 1 subunit beta yes no 2;3 9.0323E-05 92.239 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 2 1 1.0412 0.92865 29.66 10 Median 0.90425 0.84811 13.979 4 0 Median 1.1202 0.95641 1.1984 2 0 Median 1.1163 1.1033 NaN 1 0 Median 0.94503 0.81142 22.93 2 0 Median NaN NaN NaN 0 0 Median 0.47041 0.39568 NaN 1 0 Median 68114000 32724000 35390000 41558000 19632000 21926000 10764000 4955200 5808500 7330200 3824800 3505400 7000900 3424400 3576500 0 0 0 1460800 887240 573550 12315 2644 12816 62412;62413;62414;62415;62416;62417;62418;62419;62420;62421 62690;62691;62692;62693;62694;62695;62696;62697;62698;62699;62700;62701 62691 12 GSGNLEAIHIIKK DHFTKLAVEAVLRLKGSGNLEAIHIIKKLG LKGSGNLEAIHIIKKLGGSLADSYLDEGFL K G S K K L 1 0 1 0 0 0 1 2 1 3 1 2 0 0 0 1 0 0 0 0 0 0 13 1 1378.7932 P78371;F5GWF6;F8VQ14 P78371 192 204 CCT2 T-complex protein 1 subunit beta yes no 3 0.0035012 33.751 By MS/MS By matching By matching 2 1 1 1.0678 1.0061 16.177 4 Median 1.1995 1.1407 16.719 2 0 Median 1.0608 0.99869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97535 0.86928 NaN 1 0 Median 15794000 7511700 8282200 12114000 5656300 6457300 1755100 936590 818490 0 0 0 0 0 0 0 0 0 1925200 918810 1006400 12316 2644 12817 62422;62423;62424;62425 62702;62703;62704 62702 3 GSGQGDSLYPVGYLDK ELSGPGGGSRGRSDRGSGQGDSLYPVGYLD SGQGDSLYPVGYLDKQVPDTSVQETDRILV R G S D K Q 0 0 0 2 0 1 0 4 0 0 2 1 0 0 1 2 0 0 2 1 0 0 16 0 1654.7839 S4R329;H0YK61;H0YNK0;H0YNK8;Q5J8M3;H0YLP8 S4R329 35 50 EMC4 ER membrane protein complex subunit 4 yes no 2 0.00068154 45.915 By MS/MS By MS/MS 1 1 1.042 0.98712 2.6221 2 Median 1.0261 0.96898 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0582 1.0056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14413000 7114900 7298600 10702000 5208200 5494300 0 0 0 3711000 1906700 1804300 0 0 0 0 0 0 0 0 0 12317 1188 12818 62426;62427 62705;62706;62707;62708 62707 4 GSGSQSSVPSVDQFTGVGIR SQSQDEGEGSGESERGSGSQSSVPSVDQFT SSVPSVDQFTGVGIRVSFTGKQGEMREMQQ R G S I R V 0 1 0 1 0 2 0 4 0 1 0 0 0 1 1 5 1 0 0 3 0 0 20 0 1963.9599 Q9UQE7 Q9UQE7 1080 1099 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 4.4318E-21 159.02 By matching By MS/MS By matching By MS/MS By matching 1 1 2 7 2 0.80021 0.76262 43.452 13 Median 0.16215 0.17082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77226 0.84854 NaN 1 0 Median 0.92487 0.79839 17.931 2 0 Median 0.7568 0.76262 7.3581 7 1 Median 0.98884 0.81375 10.444 2 0 Median 158780000 85988000 72790000 4134600 3319000 815620 0 0 0 60900000 34241000 26659000 2575000 1217500 1357500 89880000 46611000 43269000 1287900 600120 687760 12318 4362 12819 62428;62429;62430;62431;62432;62433;62434;62435;62436;62437;62438;62439;62440 62709;62710;62711;62712;62713;62714;62715;62716;62717;62718 62712 10 GSGTAEVELK ALDTKGPEIRTGLIKGSGTAEVELKKGATL TGLIKGSGTAEVELKKGATLKITLDNAYME K G S L K K 1 0 0 0 0 0 2 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 10 0 989.50294 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 126 135 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00034654 122.13 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 1.1334 0.98282 16.783 12 Median 1.1599 1.1091 21.146 4 0 Median 1.1272 0.94288 5.6246 5 0 Median 1.3222 1.3599 NaN 1 0 Median 1.0223 0.88384 16.56 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 179770000 79521000 100250000 32565000 14609000 17956000 142780000 62755000 80025000 2807900 1325000 1482900 1615600 831820 783810 0 0 0 0 0 0 12319 2005;1237 12820 62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451;62452 62719;62720;62721;62722;62723;62724;62725;62726;62727;62728;62729;62730;62731 62725 13 GSGTAEVELKK ALDTKGPEIRTGLIKGSGTAEVELKKGATL GLIKGSGTAEVELKKGATLKITLDNAYMEK K G S K K G 1 0 0 0 0 0 2 2 0 0 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1117.5979 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 126 136 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 4.5548E-06 157.99 By MS/MS By MS/MS By matching By matching By matching 13 12 2 2 3 1.1158 1.076 17.818 32 Median 1.1204 1.1189 23.02 13 0 Median 1.0961 1.0359 8.9856 12 0 Median 1.1188 1.1863 1.869 2 0 Median 1.2224 1.1744 14.858 2 0 Median 1.0855 1.0955 27.339 3 0 Median NaN NaN NaN 0 0 Median 204810000 96012000 108800000 65648000 30181000 35468000 135580000 64181000 71395000 1759200 826870 932360 473660 209620 264040 1356200 614510 741650 0 0 0 12320 2005;1237 12821 62453;62454;62455;62456;62457;62458;62459;62460;62461;62462;62463;62464;62465;62466;62467;62468;62469;62470;62471;62472;62473;62474;62475;62476;62477;62478;62479;62480;62481;62482;62483;62484 62732;62733;62734;62735;62736;62737;62738;62739;62740;62741;62742;62743;62744;62745 62739 14 GSGTASDDEFENLR EVANCCIRIALPAPRGSGTASDDEFENLRI RGSGTASDDEFENLRIKGPNAVQLVKTTPL R G S L R I 1 1 1 2 0 0 2 2 0 0 1 0 0 1 0 2 1 0 0 0 0 0 14 0 1496.6379 Q7Z6Z7 Q7Z6Z7 1902 1915 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 2.4603E-08 118.9 By MS/MS By MS/MS 2 1 0.88496 0.86081 16.623 3 Median 0.8461 0.81869 7.0945 2 1 Median 1.3373 1.0773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38777000 19451000 19326000 25205000 13601000 11604000 13572000 5849600 7722300 0 0 0 0 0 0 0 0 0 0 0 0 12321 3253 12822 62485;62486;62487 62746;62747;62748;62749;62750 62746 5 GSGVTTYSVHPGTVQSELVR LANILFTQELARRLKGSGVTTYSVHPGTVQ TYSVHPGTVQSELVRHSSFMRWMWWLFSFF K G S V R H 0 1 0 0 0 1 1 3 1 0 1 0 0 0 1 3 3 0 1 4 0 0 20 0 2073.0491 Q8TC12;G3V2G6;H0YIZ8 Q8TC12 222 241 RDH11 Retinol dehydrogenase 11 yes no 3 7.6678E-11 92.492 By MS/MS By matching 1 1 1.2633 1.1195 11.291 2 Median 1.1048 1.0336 NaN 1 0 Median 1.4446 1.2126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24359000 11381000 12978000 21856000 10449000 11407000 2503600 932090 1571500 0 0 0 0 0 0 0 0 0 0 0 0 12322 3464 12823 62488;62489 62751;62752 62751 2 GSIDEVDKR VELLVMKALSVGLVKGSIDEVDKRVHMTWV SVGLVKGSIDEVDKRVHMTWVQPRVLDLQQ K G S K R V 0 1 0 2 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 9 1 1017.5091 Q9UNM6;A0A087WUL9;J3KNQ3 Q9UNM6 322 330 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.013008 49.418 By MS/MS By MS/MS By matching 1 1 1 1.1601 1.1689 11.449 3 Median 1.0913 1.1689 NaN 1 0 Median 1.1601 1.0859 NaN 1 0 Median 1.1919 1.3593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5125800 2290000 2835800 2796200 1298400 1497800 2220200 941030 1279100 109460 50601 58859 0 0 0 0 0 0 0 0 0 12323 4345 12824 62490;62491;62492 62753;62754 62754 2 GSIFVVFDSIESAK VLNIQMRRTLHKAFKGSIFVVFDSIESAKK KGSIFVVFDSIESAKKFVETPGQKYKETDL K G S A K K 1 0 0 1 0 0 1 1 0 2 0 1 0 2 0 3 0 0 0 2 0 0 14 0 1497.7715 P05455;E7ERC4;E9PGX9 P05455 152 165 SSB Lupus La protein yes no 2 0.00081363 59.542 By MS/MS By matching 1 1 1.1858 1.0444 13.747 2 Median NaN NaN NaN 0 0 Median 1.0874 0.94764 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2931 1.151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1376900 650490 726440 0 0 0 1257000 598330 658710 0 0 0 119890 52162 67723 0 0 0 0 0 0 12324 1867 12825 62493;62494 62755 62755 1 GSIFVVFDSIESAKK VLNIQMRRTLHKAFKGSIFVVFDSIESAKK GSIFVVFDSIESAKKFVETPGQKYKETDLL K G S K K F 1 0 0 1 0 0 1 1 0 2 0 2 0 2 0 3 0 0 0 2 0 0 15 1 1625.8665 P05455;E7ERC4;E9PGX9 P05455 152 166 SSB Lupus La protein yes no 2 0.053897 33.225 By MS/MS 1 1.723 1.6653 NaN 1 Median 1.723 1.6653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1785800 669450 1116300 1785800 669450 1116300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12325 1867 12826 62495 62756 62756 1 GSIHDFPGFDPNQDAEALYTAMK ______________________________ FDPNQDAEALYTAMKGFGSDKEAILDIITS R G S M K G 3 0 1 3 0 1 1 2 1 1 1 1 1 2 2 1 1 0 1 0 0 0 23 0 2523.1376 E5RK69;E5RFF0;E5RIU8;E5RJR0;P08133;E7EMC6;E5RI05 P08133 12 34 ANXA6 Annexin;Annexin A6 no no 3 5.8757E-08 46.578 By MS/MS By MS/MS By matching 2 1 1 0.71175 0.71475 10.924 4 Median 0.68879 0.65135 3.5305 2 0 Median 0.9256 0.8 NaN 1 0 Median 0.71535 0.76497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16685000 9440200 7244300 14225000 8144100 6081200 1703800 879770 823990 755590 416390 339200 0 0 0 0 0 0 0 0 0 12326 1898;854 12827 62496;62497;62498;62499 62757;62758;62759;62760;62761;62762 62762 6 GSIHVSSAITEDQKK VNENELQQDEPPAKKGSIHVSSAITEDQKK GSIHVSSAITEDQKKSEEVRPNIAEIEDIR K G S K K S 1 0 0 1 0 1 1 1 1 2 0 2 0 0 0 3 1 0 0 1 0 0 15 1 1598.8264 Q96Q89 Q96Q89 849 863 KIF20B Kinesin-like protein KIF20B yes yes 3;4 0.012019 23.138 By MS/MS By MS/MS 2 1 0.98985 1.4672 25.935 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0458 1.2021 29.669 2 0 Median 0.98985 0.9231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5741000 2784200 2956800 0 0 0 0 0 0 4973700 2461500 2512200 767280 322710 444570 0 0 0 0 0 0 12327 3717 12828 62500;62501;62502 62763;62764;62765 62764 3 GSIPVFWSQRPNLK IVHYNGSKASFVQTRGSIPVFWSQRPNLKY RGSIPVFWSQRPNLKYKPLPQISKVANHMD R G S L K Y 0 1 1 0 0 1 0 1 0 1 1 1 0 1 2 2 0 1 0 1 0 0 14 1 1627.8835 Q9NTJ5;E9PGZ4;F8WDN7 Q9NTJ5 258 271 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.0021377 69.979 By MS/MS 2 0.55842 0.57177 49.098 2 Median 0.55842 0.57177 49.098 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7720600 3929700 3790900 7720600 3929700 3790900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12328 4109 12829 62503;62504 62766 62766 1 GSISSTSEVHSPPNVGLR RSGEAVISNTSRLSRGSISSTSEVHSPPNV SSTSEVHSPPNVGLRRSGQIEGVRQMHSNA R G S L R R 0 1 1 0 0 0 1 2 1 1 1 0 0 0 2 5 1 0 0 2 0 0 18 0 1822.9173 Q8WWQ0 Q8WWQ0 673 690 PHIP PH-interacting protein yes yes 3 0.00061302 46.249 By MS/MS By MS/MS 1 2 0.86691 0.7202 7.5151 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61862 0.63459 NaN 1 1 Median 0.86994 0.72271 0.49289 2 2 Median 19476000 11864000 7612100 0 0 0 0 0 0 0 0 0 0 0 0 12952000 8268900 4682800 6523900 3594600 2929300 12329 3512 12830 62505;62506;62507 62767;62768;62769 62769 3 GSISSTSEVHSPPNVGLRR RSGEAVISNTSRLSRGSISSTSEVHSPPNV STSEVHSPPNVGLRRSGQIEGVRQMHSNAP R G S R R S 0 2 1 0 0 0 1 2 1 1 1 0 0 0 2 5 1 0 0 2 0 0 19 1 1979.0185 Q8WWQ0 Q8WWQ0 673 691 PHIP PH-interacting protein yes yes 3;4 5.6759E-09 84.14 By MS/MS By matching 2 1 0.68695 0.74312 16.768 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65969 0.71364 5.7255 2 0 Median 1.0778 0.94598 NaN 1 0 Median 12768000 7442000 5326100 0 0 0 0 0 0 0 0 0 0 0 0 11680000 6847100 4832900 1088100 594930 493180 12330 3512 12831 62508;62509;62510 62770;62771;62772;62773 62772 4 GSITISAEEIKDNR LTRPLVMKTGRPAGKGSITISAEEIKDNRV KGSITISAEEIKDNRVVLFEMEARKLDNKD K G S N R V 1 1 1 1 0 0 2 1 0 3 0 1 0 0 0 2 1 0 0 0 0 0 14 1 1531.7842 O75131;A0A087WYQ3;H0YB26;E5RHZ0;A0A087WXR6 O75131 126 139 CPNE3 Copine-3 yes no 2;3 2.3765E-08 149.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.0738 1.0254 18.993 8 Median 1.0633 1.0609 24.879 3 1 Median 1.012 0.92369 15.41 2 1 Median 0.84276 0.94502 NaN 1 0 Median 1.1486 1.0778 8.148 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70807000 32379000 38428000 41136000 17491000 23645000 12980000 6031000 6949200 10187000 5932300 4254400 6504300 2924600 3579700 0 0 0 0 0 0 12331 1645 12832 62511;62512;62513;62514;62515;62516;62517;62518 62774;62775;62776;62777;62778;62779;62780;62781;62782 62776 8 GSIVWQEVFDDKAK FYIQKVLDIIATINKGSIVWQEVFDDKAKL KGSIVWQEVFDDKAKLAPGTIVEVWKDSAY K G S A K L 1 0 0 2 0 1 1 1 0 1 0 2 0 1 0 1 0 1 0 2 0 0 14 1 1620.8148 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 401 414 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 3 0.03384 19.075 By MS/MS 1 0.7971 0.81143 NaN 1 Median 0.7971 0.81143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3974200 2025900 1948400 3974200 2025900 1948400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12332 1888 12833 62519 62783 62783 1 GSIYLAGQNIQDVSLESLRR STIVRLLFRFYEPQKGSIYLAGQNIQDVSL AGQNIQDVSLESLRRAVGVVPQDAVLFHNT K G S R R A 1 2 1 1 0 2 1 2 0 2 3 0 0 0 0 3 0 0 1 1 0 0 20 1 2218.1706 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;A0A087WW65 O75027 527 546 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 3 6.0515E-06 45.257 By MS/MS 1 1.5252 1.4295 NaN 1 Median NaN NaN NaN 0 0 Median 1.5252 1.4295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4080500 1495900 2584600 0 0 0 4080500 1495900 2584600 0 0 0 0 0 0 0 0 0 0 0 0 12333 1642 12834 62520 62784;62785 62784 2 GSLAADKVVEEIR VVVNDLGGDFKGVGKGSLAADKVVEEIRRR GKGSLAADKVVEEIRRRGGKAVANYDSVEE K G S I R R 2 1 0 1 0 0 2 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 13 1 1385.7514 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 51 63 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2;3 0.00064267 94.616 By MS/MS By matching By MS/MS 3 1 1 1.0568 1.0837 17.899 5 Median 1.0568 1.0837 9.0969 3 3 Median NaN NaN NaN 0 0 Median 0.83469 0.91235 NaN 1 0 Median 1.526 1.4401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23366000 11812000 11554000 19029000 9479900 9549100 0 0 0 2500800 1548600 952250 1835900 783410 1052500 0 0 0 0 0 0 12334 393 12835 62521;62522;62523;62524;62525 62786;62787;62788;62789 62787 4 GSLAADKVVEEIRR VVVNDLGGDFKGVGKGSLAADKVVEEIRRR KGSLAADKVVEEIRRRGGKAVANYDSVEEG K G S R R R 2 2 0 1 0 0 2 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 14 2 1541.8526 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 51 64 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 3.7945E-06 89.231 By MS/MS By matching By MS/MS 2 1 2 1.0487 1.1421 19.85 5 Median 0.99215 1.0087 17.561 2 0 Median 1.1605 1.3615 NaN 1 0 Median 0.91656 1.0003 22.955 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34656000 16713000 17943000 15072000 7699300 7372300 2906400 1429000 1477400 16678000 7584800 9093700 0 0 0 0 0 0 0 0 0 12335 393 12836 62526;62527;62528;62529;62530 62790;62791;62792 62791 3 GSLASLDSLR PSDQYYWAPLAQHERGSLASLDSLRKGGPP AQHERGSLASLDSLRKGGPPPPNWRQPELP R G S L R K 1 1 0 1 0 0 0 1 0 0 3 0 0 0 0 3 0 0 0 0 0 0 10 0 1017.5455 C9JZR2;O60716;E9PKY0 C9JZR2 345 354 CTNND1 Catenin delta-1 yes no 2 0.036655 46.158 By MS/MS 1 0.82602 0.87067 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82602 0.87067 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3932300 1669800 2262500 0 0 0 0 0 0 3932300 1669800 2262500 0 0 0 0 0 0 0 0 0 12336 732 12837 62531 62793 62793 1 GSLDYRPLTTADPIDEHR TNPNYEIMCMIRDFRGSLDYRPLTTADPID DYRPLTTADPIDEHRICVCVRKRPLNKKET R G S H R I 1 2 0 3 0 0 1 1 1 1 2 0 0 0 2 1 2 0 1 0 0 0 18 1 2055.0021 O00139;D6R9M0 O00139 206 223 KIF2A Kinesin-like protein KIF2A no no 4 0.0051066 25.198 By matching By MS/MS 1 1 0.82599 0.89905 24.657 2 Median 0.73657 0.7552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92627 1.0703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9017500 3936800 5080700 3622600 1682000 1940600 0 0 0 5394900 2254800 3140100 0 0 0 0 0 0 0 0 0 12337 1440;804 12838 62532;62533 62794 62794 1 GSLESPATDVFGSTEEGEKR RWSTLVEDYGMELRKGSLESPATDVFGSTE PATDVFGSTEEGEKRWKDLKNRVVEHNIRI K G S K R W 1 1 0 1 0 0 4 3 0 0 1 1 0 1 1 3 2 0 0 1 0 0 20 1 2094.9706 O00232 O00232 331 350 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 3 6.784E-09 64.265 By MS/MS By matching By MS/MS 1 1 1 0.86655 0.86284 39.016 3 Median 0.86655 0.86284 NaN 1 0 Median 0.52158 0.47609 NaN 1 0 Median 0.97938 0.99279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33896000 17918000 15978000 18420000 9321000 9099400 6504000 4042700 2461300 8972000 4554400 4417600 0 0 0 0 0 0 0 0 0 12338 1449 12839 62534;62535;62536 62795;62796;62797;62798 62798 4 GSLGATGEIK SAPNVDFNLEGPKVKGSLGATGEIKGPTVG GPKVKGSLGATGEIKGPTVGGGLPGIGVQG K G S I K G 1 0 0 0 0 0 1 3 0 1 1 1 0 0 0 1 1 0 0 0 0 0 10 0 931.49746 Q09666 Q09666 5463 5472 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.040057 31.074 By MS/MS 2 1.3273 1.1959 23.911 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3273 1.1959 23.911 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3655400 1596500 2059000 0 0 0 0 0 0 0 0 0 3655400 1596500 2059000 0 0 0 0 0 0 12339 2749 12840 62537;62538 62799;62800;62801 62799 3 GSLGGGFSSGGFSGGSFSR GGGGGVSSLRISSSKGSLGGGFSSGGFSGG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY K G S S R G 0 1 0 0 0 0 0 8 0 0 1 0 0 3 0 6 0 0 0 0 0 0 19 0 1706.7649 P13645;CON__P13645 P13645 41 59 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 6.5489E-58 172.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 5 12 11 6 2 0.0074704 0.0070421 137.31 36 Median 0.0088759 0.0083878 184.4 11 11 Median 0.0034861 0.0028878 47.432 3 3 Median 0.014219 0.015006 115.49 11 11 Median 0.004631 0.004041 56.633 7 7 Median 0.0070528 0.0074663 45.041 3 3 Median 0.007126 0.0058995 NaN 1 1 Median 3570300000 3552800000 17513000 1538900000 1531100000 7885600 163080000 162610000 473410 751590000 744480000 7105100 282020000 281240000 778300 716240000 715020000 1225900 118400000 118360000 44785 + 12340 756 12841 62539;62540;62541;62542;62543;62544;62545;62546;62547;62548;62549;62550;62551;62552;62553;62554;62555;62556;62557;62558;62559;62560;62561;62562;62563;62564;62565;62566;62567;62568;62569;62570;62571;62572;62573;62574;62575;62576;62577;62578;62579;62580;62581;62582;62583;62584;62585;62586 62802;62803;62804;62805;62806;62807;62808;62809;62810;62811;62812;62813;62814;62815;62816;62817;62818;62819;62820;62821;62822;62823;62824;62825;62826;62827;62828;62829;62830;62831;62832;62833;62834;62835;62836;62837;62838;62839;62840;62841;62842;62843;62844;62845;62846;62847;62848;62849;62850;62851;62852;62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863;62864;62865;62866;62867;62868;62869;62870;62871;62872;62873;62874;62875;62876;62877;62878;62879;62880;62881 62807 80 GSLGQGTAPVLPGK VGKGLQVKAASVPVKGSLGQGTAPVLPGKT KGSLGQGTAPVLPGKTGPTVTQVKAEKQED K G S G K T 1 0 0 0 0 1 0 4 0 0 2 1 0 0 2 1 1 0 0 1 0 0 14 0 1280.7089 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 733 746 TCOF1 Treacle protein no no 2 2.9899E-06 96.015 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 6 1 2 0.99858 0.90382 11.854 17 Median 1.0231 0.99854 15.521 2 0 Median 0.99369 0.87229 12.804 2 0 Median 0.8486 0.92 12 4 0 Median 1.0423 0.88627 13.074 6 0 Median 1.026 1.0735 NaN 1 0 Median 1.0223 0.86082 5.4689 2 0 Median 173620000 91710000 81910000 9304600 4612100 4692500 6102400 2891200 3211200 118980000 64959000 54022000 27251000 12875000 14376000 7203800 4036600 3167200 4775800 2335500 2440300 12341 2816;891 12842 62587;62588;62589;62590;62591;62592;62593;62594;62595;62596;62597;62598;62599;62600;62601;62602;62603 62882;62883;62884;62885;62886;62887;62888;62889;62890;62891;62892;62893;62894;62895;62896;62897;62898 62885 17 GSLGSQGAKDEPEEELQK KRDKASGDVKEKKGKGSLGSQGAKDEPEEE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K G S Q K G 1 0 0 1 0 2 4 3 0 0 2 2 0 0 1 2 0 0 0 0 0 0 18 1 1900.9014 E7ETY2;A0A3B3IS06;Q13428 Q13428 1406 1423 TCOF1 Treacle protein no no 3 2.3065E-13 125.45 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.88333 0.93151 17.954 6 Median 0.83037 0.8316 NaN 1 0 Median 0.93968 0.91523 NaN 1 0 Median 0.70579 0.81475 21.432 2 1 Median 1.1563 1.0966 11.751 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78482000 43732000 34750000 3145500 1357500 1788000 1186100 633530 552530 64950000 37331000 27619000 9201100 4410500 4790600 0 0 0 0 0 0 12342 2816;891 12843 62604;62605;62606;62607;62608;62609 62899;62900;62901;62902;62903;62904;62905;62906;62907;62908;62909;62910;62911 62909 13 GSLKEELLK ______________________________ ______________________________ M G S L K A 0 0 0 0 0 0 2 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 9 1 1015.5914 Q9UH65;E7EMB1;E9PJK8 Q9UH65 2 10 SWAP70 Switch-associated protein 70 yes no 2 0.00089583 76.221 By MS/MS 1 1.2659 1.1856 NaN 1 Median 1.2659 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15204000 6987600 8215900 15204000 6987600 8215900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12343 4270 12844 62610 62912;62913 62912 2 GSLLFTAGPLEEER FAFLKKEVVGKDLLKGSLLFTAGPLEEERF KGSLLFTAGPLEEERFGFPAFSGISRLTWL K G S E R F 1 1 0 0 0 0 3 2 0 0 3 0 0 1 1 1 1 0 0 0 0 0 14 0 1517.7726 P53004 P53004 148 161 BLVRA Biliverdin reductase A yes yes 2 0.0086365 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12344 2463 12845 62611 62914 62914 1 GSLLIDSSTIDPAVSK EAYSGANGILKKVKKGSLLIDSSTIDPAVS SLLIDSSTIDPAVSKELAKEVEKMGAVFMD K G S S K E 1 0 0 2 0 0 0 1 0 2 2 1 0 0 1 4 1 0 0 1 0 0 16 0 1601.8512 P31937;H7BZL2 P31937 126 141 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes no 2 7.0748E-05 76.655 By MS/MS 1 0.72188 0.65571 NaN 1 Median 0.72188 0.65571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21278000 13937000 7341900 21278000 13937000 7341900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12345 2206 12846 62612 62915;62916;62917 62917 3 GSLLWNQQDGTLSLSQR EHSFEIDDSANFRKRGSLLWNQQDGTLSLS LLWNQQDGTLSLSQRQLSEEERGRLRDVAA R G S Q R Q 0 1 1 1 0 3 0 2 0 0 4 0 0 0 0 3 1 1 0 0 0 0 17 0 1901.9595 M0R2A0;Q5UCC4 M0R2A0 72 88 EMC10 ER membrane protein complex subunit 10 yes no 2 3.317E-12 147.87 By MS/MS By matching 2 1 1.2723 1.0873 55.292 3 Median 1.4914 1.4046 75.349 2 1 Median 1.2723 1.0873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16007000 7056500 8950100 15384000 6764500 8619200 622850 291930 330920 0 0 0 0 0 0 0 0 0 0 0 0 12346 1435 12847 62613;62614;62615 62918;62919;62920 62920 3 GSLLWVLDHTK RNLEILQNQTDMKTKGSLLWVLDHTKTSFG MKTKGSLLWVLDHTKTSFGRRKLKKWVTQP K G S T K T 0 0 0 1 0 0 0 1 1 0 3 1 0 0 0 1 1 1 0 1 0 0 11 0 1267.6925 P20585;A0A590UJW0;A0A590UKC9 P20585 558 568 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.03568 29.473 By MS/MS By matching 1 1 1.0594 1.017 8.113 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88931 0.96029 NaN 1 0 Median 1.2619 1.077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748400 1340300 1408100 0 0 0 0 0 0 2390700 1186000 1204700 357700 154280 203420 0 0 0 0 0 0 12347 2080 12848 62616;62617 62921 62921 1 GSLPANVPTPR RGQVPMQDPRAAMQRGSLPANVPTPRGLLG AMQRGSLPANVPTPRGLLGDAPNDPRGGTL R G S P R G 1 1 1 0 0 0 0 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 11 0 1107.6037 P33240;E7EWR4;E9PID8 P33240 309 319 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.055063 61.78 By matching By matching By MS/MS By matching By matching 1 1 2 3 1 0.82388 0.7437 43.864 8 Median 0.84 0.81765 NaN 1 0 Median 0.70115 0.60763 NaN 1 0 Median 0.86739 0.96073 81.821 2 0 Median 1.1969 0.95546 39.393 3 0 Median NaN NaN NaN 0 0 Median 0.66706 0.5717 NaN 1 0 Median 47792000 26985000 20807000 6949700 3335400 3614300 2453700 1283500 1170200 32322000 19366000 12956000 5096600 2576000 2520600 0 0 0 969970 423690 546280 12348 2222 12849 62618;62619;62620;62621;62622;62623;62624;62625 62922 62922 0 GSLQILDQLLLPK ______________________________ SRGSLQILDQLLLPKQSRYEAVGSVHQAWE R G S P K Q 0 0 0 1 0 2 0 1 0 1 5 1 0 0 1 1 0 0 0 0 0 0 13 0 1436.8603 Q9BV20 Q9BV20 11 23 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.003266 44.863 By MS/MS By matching By matching 1 1 2 0.83731 0.84898 22.866 4 Median 0.80194 0.7502 NaN 1 0 Median 0.70556 0.60393 NaN 1 0 Median 0.94014 0.96954 1.2845 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9358100 5092400 4265700 3632600 1978300 1654200 5083200 2789400 2293800 642360 324690 317660 0 0 0 0 0 0 0 0 0 12349 3844 12850 62626;62627;62628;62629 62923 62923 1 GSLRPNGIIVIK HLTDQHLAEFLRRCKGSLRPNGIIVIKDNM RCKGSLRPNGIIVIKDNMAQEGVILDDVDS K G S I K D 0 1 1 0 0 0 0 2 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 1 1265.782 Q9BV86;S4R338 Q9BV86 155 166 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2;3 0.0090894 42.001 By MS/MS By matching By matching 2 2 2 1.1386 1.1556 16.285 6 Median 1.1507 1.2026 5.1522 2 0 Median 1.1862 1.1089 5.3422 2 0 Median 0.93279 0.96276 27.64 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32820000 15613000 17207000 22246000 10772000 11475000 3740700 1667300 2073400 6832700 3174200 3658400 0 0 0 0 0 0 0 0 0 12350 3848 12851 62630;62631;62632;62633;62634;62635 62924;62925 62925 2 GSLTFEPLTLVPIQTK VLVVPVKTKYNFNNRGSLTFEPLTLVPIQT SLTFEPLTLVPIQTKMIDVDSLTDKECDWL R G S T K M 0 0 0 0 0 1 1 1 0 1 3 1 0 1 2 1 3 0 0 1 0 0 16 0 1742.9818 Q9NQW7;Q5T6H7 Q9NQW7 555 570 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 0.00013111 51.218 By matching By MS/MS By matching 4 1 1 0.82536 0.79168 12.408 6 Median 0.78577 0.75564 11.323 4 0 Median 0.97731 0.84374 NaN 1 0 Median 0.83417 0.88724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17207000 8969200 8237300 11881000 6321200 5560100 2351200 1154400 1196800 2973900 1493600 1480300 0 0 0 0 0 0 0 0 0 12351 4070 12852 62636;62637;62638;62639;62640;62641 62926;62927 62926 2 GSLVAPDR LNFALRSVLGEADQKGSLVAPDRLRFDFTA LGEADQKGSLVAPDRLRFDFTAKGAMSTQQ K G S D R L 1 1 0 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 8 0 813.43447 P49588;H3BPK7 P49588 626 633 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.053687 50.703 By MS/MS 1 1.1861 0.99669 NaN 1 Median NaN NaN NaN 0 0 Median 1.1861 0.99669 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6644900 2942200 3702800 0 0 0 6644900 2942200 3702800 0 0 0 0 0 0 0 0 0 0 0 0 12352 2385 12853 62642 62928 62928 1 GSLVDNIQQHFLLSDR FDNFKRVFKVVEEMRGSLVDNIQQHFLLSD SLVDNIQQHFLLSDRLARDYAAIVFFANNR R G S D R L 0 1 1 2 0 2 0 1 1 1 3 0 0 1 0 2 0 0 0 1 0 0 16 0 1840.9432 O43427;E9PSD3 O43427 153 168 FIBP Acidic fibroblast growth factor intracellular-binding protein yes no 3 0.0064791 25.319 By MS/MS By matching 1 1 1.0043 0.96283 5.4255 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92351 1.0005 NaN 1 0 Median 1.0922 0.92659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3771500 1908000 1863500 0 0 0 0 0 0 3630700 1855100 1775500 140860 52898 87957 0 0 0 0 0 0 12353 1572 12854 62643;62644 62929 62929 1 GSLVDYLR EEKGGLYIVTEYMAKGSLVDYLRSRGRSVL VTEYMAKGSLVDYLRSRGRSVLGGDCLLKF K G S L R S 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 921.49198 P41240 P41240 272 279 CSK Tyrosine-protein kinase CSK yes yes 2 0.020415 46.426 By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1.22 1.0908 27.287 6 Median 1.1448 1.142 NaN 1 0 Median 1.2424 1.0835 NaN 1 0 Median 1.1992 1.1922 NaN 1 0 Median 0.8311 0.79107 44.595 2 0 Median NaN NaN NaN 0 0 Median 1.2542 1.0973 NaN 1 0 Median 12680000 5580000 7099900 3439700 1456700 1983000 946890 427720 519180 7296100 3289700 4006300 630530 262040 368490 0 0 0 366740 143840 222900 12354 2300 12855 62645;62646;62647;62648;62649;62650 62930 62930 1 GSMAGSTGVHDTVVNQLLSK HIIIFDEIDAICKQRGSMAGSTGVHDTVVN STGVHDTVVNQLLSKIDGVEQLNNILVIGM R G S S K I 1 0 1 1 0 1 0 3 1 0 2 1 1 0 0 3 2 0 0 3 0 0 20 0 1999.9997 I3L0N3;P46459 I3L0N3 333 352 NSF Vesicle-fusing ATPase yes no 3 1.8179E-07 55.383 By MS/MS By matching By matching 1 2 1 1.159 1.0331 36.778 4 Median 1.0023 0.89434 NaN 1 0 Median 0.96864 0.86016 46.299 2 0 Median 1.3709 1.4423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28850000 13211000 15639000 21998000 10500000 11498000 1570200 679330 890880 5281300 2031800 3249500 0 0 0 0 0 0 0 0 0 12355 1272 12856 62651;62652;62653;62654 62931;62932 62931 2 GSMFDELMAR VDTSMEESLKHLIAKGSMFDELMARSEDML HLIAKGSMFDELMARSEDMLQMDIQNISSQ K G S A R S 1 1 0 1 0 0 1 1 0 0 1 0 2 1 0 1 0 0 0 0 0 0 10 0 1155.5053 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 777 786 SYNE2 Nesprin-2 yes no 2 0.032874 33.263 By matching By MS/MS By matching By matching 1 1 1 1 1.2699 1.2086 15.656 4 Median NaN NaN NaN 0 0 Median 1.644 1.4254 NaN 1 0 Median 0.91794 0.99675 NaN 1 0 Median 1.4927 1.2942 NaN 1 0 Median 1.0804 1.1287 NaN 1 0 Median NaN NaN NaN 0 0 Median 5441800 2667900 2773800 0 0 0 301440 119820 181620 3848100 1916900 1931300 110260 42530 67732 1182000 588740 593210 0 0 0 12356 3521 12857 62655;62656;62657;62658 62933 62933 1 GSNEEDTDTPLFIGK HTGIDLVGTIIATIKGSNEEDTDTPLFIGK GSNEEDTDTPLFIGKVRTLEFPFVNGSAEI K G S G K V 0 0 1 2 0 0 2 2 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1621.7471 A6NHR9;J3KTL8;A0A2R8YE92 A6NHR9 1543 1557 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.8492E-06 93.839 By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 0.95918 0.92137 9.1642 6 Median NaN NaN NaN 0 0 Median 0.94734 0.8243 NaN 1 0 Median 0.86442 0.94177 15.176 2 0 Median 1.0312 0.93536 NaN 1 0 Median 0.86541 0.90759 NaN 1 0 Median 1.1705 0.98996 NaN 1 0 Median 44989000 23964000 21025000 0 0 0 958090 534860 423240 37416000 20211000 17204000 1689500 770320 919170 4696300 2366400 2329900 229830 81359 148470 12357 518 12858 62659;62660;62661;62662;62663;62664 62934;62935;62936;62937;62938 62935 5 GSNKLVIEEAER TGCASPGKTVTIVVRGSNKLVIEEAERSIH VVRGSNKLVIEEAERSIHDALCVIRCLVKK R G S E R S 1 1 1 0 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1343.7045 P50991 P50991 392 403 CCT4 T-complex protein 1 subunit delta yes yes 2 0.023885 42.001 By MS/MS 1 0.93084 0.94219 NaN 1 Median 0.93084 0.94219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2381900 1123400 1258500 2381900 1123400 1258500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12358 2424 12859 62665 62939;62940 62939 2 GSNLDAPEPYR DLYPEHYRKYSDYIKGSNLDAPEPYRIGRI DYIKGSNLDAPEPYRIGRIKEIFCPKKSNG K G S Y R I 1 1 1 1 0 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 11 0 1217.5677 P26358 P26358 982 992 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 1.3923E-09 170.47 By MS/MS By MS/MS 1 2 0.7197 0.70534 6.349 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.647 0.70534 NaN 1 0 Median 0.74991 0.65848 7.0083 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103010000 59160000 43853000 0 0 0 0 0 0 69795000 40916000 28879000 33218000 18245000 14973000 0 0 0 0 0 0 12359 2142 12860 62666;62667;62668 62941;62942;62943;62944;62945;62946 62941 6 GSNMDFREPTEEER GPPMGSRFRDGPPLRGSNMDFREPTEEERA RGSNMDFREPTEEERAQRPRLQLKPRTVAT R G S E R A 0 2 1 1 0 0 4 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 14 1 1695.7159 Q15056 Q15056 192 205 EIF4H Eukaryotic translation initiation factor 4H yes yes 2;3 1.6903E-08 161.21 By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 3 1 0.94785 0.89435 23.077 12 Median 0.88587 0.94694 28.908 3 0 Median 0.92791 0.78804 3.5308 3 0 Median 0.92722 0.96138 7.6353 2 0 Median 0.99416 0.89019 34.096 3 0 Median NaN NaN NaN 0 0 Median 0.96821 0.8625 NaN 1 0 Median 106290000 54604000 51683000 31746000 16798000 14948000 45359000 22449000 22910000 13786000 7548000 6238300 14678000 7484100 7194100 0 0 0 716840 324060 392780 12360 2922 12861;12862 62669;62670;62671;62672;62673;62674;62675;62676;62677;62678;62679;62680 62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958 62953 1605 12 GSNNVALGYDEGSIIVK LNYGMERVWCVASLRGSNNVALGYDEGSII NNVALGYDEGSIIVKLGREEPAMSMDANGK R G S V K L 1 0 2 1 0 0 1 3 0 2 1 1 0 0 0 2 0 0 1 2 0 0 17 0 1734.8788 P35606 P35606 282 298 COPB2 Coatomer subunit beta yes yes 2 5.4058E-07 88.092 By MS/MS By matching By MS/MS By matching 4 4 1 1 1.0814 0.95009 13.309 10 Median 1.0474 1.0254 8.9337 4 2 Median 1.0814 0.93563 5.9228 4 0 Median 1.208 1.3333 NaN 1 0 Median 1.0169 0.88429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55973000 28192000 27781000 44228000 22631000 21597000 5925800 2788300 3137500 4919500 2343800 2575800 899100 428560 470540 0 0 0 0 0 0 12361 2246 12863 62681;62682;62683;62684;62685;62686;62687;62688;62689;62690 62959;62960;62961;62962;62963;62964;62965 62959 7 GSNPHLQTFTFTR YMEKLLAETVAPAVRGSNPHLQTFTFTRVE VRGSNPHLQTFTFTRVELGEKPLRIIGVKV R G S T R V 0 1 1 0 0 1 0 1 1 0 1 0 0 2 1 1 3 0 0 0 0 0 13 0 1504.7423 Q9BSJ8;F8VZB1 Q9BSJ8 171 183 ESYT1 Extended synaptotagmin-1 yes no 2;3 1.5013E-05 95.498 By MS/MS By matching 2 1 1.27 1.2188 7.6497 3 Plateau 1.262 1.2148 2.3994 2 0 Median NaN NaN NaN 0 0 Median 0.97161 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40733000 19407000 21326000 37297000 17512000 19785000 0 0 0 3435800 1895100 1540700 0 0 0 0 0 0 0 0 0 12362 3816 12864 62691;62692;62693 62966;62967;62968 62968 3 GSNSLPLLR LLHAATYTKKVLDARGSNSLPLLRSVLDKL KVLDARGSNSLPLLRSVLDKLSANQQNILK R G S L R S 0 1 1 0 0 0 0 1 0 0 3 0 0 0 1 2 0 0 0 0 0 0 9 0 955.54508 P57088;D6RAA6;H0Y8N0 P57088 135 143 TMEM33 Transmembrane protein 33 yes no 2 0.0034179 65.246 By matching By MS/MS By MS/MS 1 2 1 1.1776 1.0642 45.643 4 Median 1.2648 1.2563 NaN 1 0 Median 1.0131 0.84812 8.6248 2 0 Median 2.3642 2.2135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17217000 7636400 9580900 6799400 2383000 4416400 9052000 4760200 4291700 1365800 493100 872720 0 0 0 0 0 0 0 0 0 12363 2516 12865 62694;62695;62696;62697 62969;62970;62971 62971 3 GSNTIASAAADK NIPALVRLLQAFLERGSNTIASAAADKIPG LERGSNTIASAAADKIPGLLGVFQKLIASK R G S D K I 4 0 1 1 0 0 0 1 0 1 0 1 0 0 0 2 1 0 0 0 0 0 12 0 1104.5411 P55060 P55060 715 726 CSE1L Exportin-2 yes yes 2 0.0032126 46.706 By matching By MS/MS 1 1 1.2141 1.1405 51.939 2 Median 0.77889 0.78994 NaN 1 0 Median 1.8923 1.6466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3269200 1072400 2196800 295470 125580 169890 2973700 946830 2026900 0 0 0 0 0 0 0 0 0 0 0 0 12364 2493 12866 62698;62699 62972 62972 1 GSNTIASAAADKIPGLLGVFQK NIPALVRLLQAFLERGSNTIASAAADKIPG AAADKIPGLLGVFQKLIASKANDHQGFYLL R G S Q K L 4 0 1 1 0 1 0 3 0 2 2 2 0 1 1 2 1 0 0 1 0 0 22 1 2157.1794 P55060 P55060 715 736 CSE1L Exportin-2 yes yes 2;3 2.0712E-12 71.535 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 1 1 1 0.98865 0.98629 30.632 10 Median 0.94621 0.98969 14.081 3 0 Plateau 0.99183 0.94421 7.7348 4 0 Median 1.027 1.1752 NaN 1 0 Median 1.039 0.98976 NaN 1 0 Median 2.1058 2.3549 NaN 1 0 Median NaN NaN NaN 0 0 Median 56584000 27510000 29074000 19840000 10034000 9806200 33139000 15919000 17219000 2733100 1233500 1499600 121720 58469 63248 750740 265540 485200 0 0 0 12365 2493 12867 62700;62701;62702;62703;62704;62705;62706;62707;62708;62709 62973;62974;62975;62976;62977;62978;62979;62980;62981;62982 62982 10 GSNWVPR SSRIRFMLQDVLDLRGSNWVPRRGDQGPKT LQDVLDLRGSNWVPRRGDQGPKTIDQIHKE R G S P R R 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 0 7 0 814.40859 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 824 830 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.012848 77.496 By MS/MS By MS/MS 1 3 1.0883 1.0016 20.607 4 Median 1.0142 1.0185 NaN 1 0 Median 1.1678 0.98489 24.237 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13498000 6687500 6810600 1614500 689710 924760 11884000 5997800 5885800 0 0 0 0 0 0 0 0 0 0 0 0 12366 894 12868 62710;62711;62712;62713 62983;62984;62985;62986;62987 62986 5 GSPEDKDSEIELLTAGK NSVLEVEKSLVLAEKGSPEDKDSEIELLTA PEDKDSEIELLTAGKKFRILATMNPGGDFG K G S G K K 1 0 0 2 0 0 3 2 0 1 2 2 0 0 1 2 1 0 0 0 0 0 17 1 1787.8789 Q9NU22 Q9NU22 1497 1513 MDN1 Midasin yes yes 3 1.0491E-05 51.265 By MS/MS 1 0.71784 0.81384 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71784 0.81384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10854000 6571600 4282400 0 0 0 0 0 0 10854000 6571600 4282400 0 0 0 0 0 0 0 0 0 12367 4112 12869 62714 62988 62988 1 GSPEDKDSEIELLTAGKK NSVLEVEKSLVLAEKGSPEDKDSEIELLTA EDKDSEIELLTAGKKFRILATMNPGGDFGK K G S K K F 1 0 0 2 0 0 3 2 0 1 2 3 0 0 1 2 1 0 0 0 0 0 18 2 1915.9739 Q9NU22 Q9NU22 1497 1514 MDN1 Midasin yes yes 3 0.031891 40.515 By MS/MS 1 1.5038 1.8671 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5038 1.8671 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20743000 8530400 12212000 0 0 0 0 0 0 20743000 8530400 12212000 0 0 0 0 0 0 0 0 0 12368 4112 12870 62715 62989 62989 1 GSPFQVTR LDSEVTSKLKSYEFRGSPFQVTRGDYAPIL LKSYEFRGSPFQVTRGDYAPILQKVVEQLE R G S T R G 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 8 0 890.46102 G3V1D3;G3V180;Q9NY33;E9PQ14 G3V1D3 260 267 DPP3 Dipeptidyl peptidase 3 yes no 2 0.040793 55.531 By MS/MS 1 0.266 0.25163 NaN 1 Median 0.266 0.25163 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15694000 11246000 4447700 15694000 11246000 4447700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12369 1102 12871 62716 62990 62990 1 GSPHYFSPFRPY SRSGSRGRDSPYQSRGSPHYFSPFRPY___ QSRGSPHYFSPFRPY_______________ R G S P Y - 0 1 0 0 0 0 0 1 1 0 0 0 0 2 3 2 0 0 2 0 0 0 12 1 1453.6779 Q13242 Q13242 210 221 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 3 0.066204 13.679 By matching By MS/MS By matching By matching 1 1 1 1 0.79462 0.76164 16.064 4 Median 0.87484 0.82518 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60116 0.57246 NaN 1 0 Median 0.92596 0.75962 NaN 1 0 Median 0.72176 0.76366 NaN 1 0 Median NaN NaN NaN 0 0 Median 9548000 4656200 4891700 2307000 1140700 1166300 0 0 0 3326600 1802000 1524600 392260 171620 220640 3522100 1541900 1980100 0 0 0 12370 2799 12872 62717;62718;62719;62720 62991 62991 1 GSPLGEVVEQGITR VQEKYVWNKRESTEKGSPLGEVVEQGITRV KGSPLGEVVEQGITRVRNATDAVGIVLKEL K G S T R V 0 1 0 0 0 1 2 3 0 1 1 0 0 0 1 1 1 0 0 2 0 0 14 0 1440.7573 P51398;V9GYL9;V9GYJ9 P51398 219 232 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 8.2599E-08 99.752 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.1793 1.0339 19.74 6 Median 0.89004 0.88713 NaN 1 0 Median 1.2716 1.1095 NaN 1 0 Median 0.80305 0.87542 NaN 1 0 Median 1.3605 1.1707 NaN 1 0 Median 1.3655 1.4667 NaN 1 0 Median 1.0937 0.96351 NaN 1 0 Median 35577000 17516000 18061000 11489000 6116700 5372700 10273000 4667500 5605600 11115000 5493900 5621200 486160 230230 255930 1826300 789560 1036700 386670 217760 168910 12371 2431 12873 62721;62722;62723;62724;62725;62726 62992;62993;62994;62995 62993 4 GSPLLGPVVPGPSPIPSVTEK QVAHLCSQQSKQDSRGSPLLGPVVPGPSPI PVVPGPSPIPSVTEKRLSSGQNKASGKRQR R G S E K R 0 0 0 0 0 0 1 3 0 1 2 1 0 0 6 3 1 0 0 3 0 0 21 0 2027.1303 P49454 P49454 2899 2919 CENPF Centromere protein F yes yes 2 6.9032E-06 40.025 By MS/MS By matching 1 1 0.39907 0.39965 3.893 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37916 0.41081 NaN 1 0 Median 0.42003 0.3888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3626600 2411600 1215000 0 0 0 0 0 0 3435800 2275400 1160400 190750 136200 54550 0 0 0 0 0 0 12372 2383 12874 62727;62728 62996 62996 1 GSPLLGPVVPGPSPIPSVTEKR QVAHLCSQQSKQDSRGSPLLGPVVPGPSPI VVPGPSPIPSVTEKRLSSGQNKASGKRQRS R G S K R L 0 1 0 0 0 0 1 3 0 1 2 1 0 0 6 3 1 0 0 3 0 0 22 1 2183.2314 P49454 P49454 2899 2920 CENPF Centromere protein F yes yes 3 0.0071746 26.477 By MS/MS 1 0.34722 0.40234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34722 0.40234 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8108200 5659900 2448200 0 0 0 0 0 0 8108200 5659900 2448200 0 0 0 0 0 0 0 0 0 12373 2383 12875 62729 62997 62997 1 GSPLLIGVR FKSVHFPGQAVGTRRGSPLLIGVRSEHKLS AVGTRRGSPLLIGVRSEHKLSTDHIPILYR R G S V R S 0 1 0 0 0 0 0 2 0 1 2 0 0 0 1 1 0 0 0 1 0 0 9 0 910.56 Q06210;O94808;E5RJP4 Q06210 204 212 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 2 0.011663 47.082 By MS/MS By MS/MS 1 1 0.88977 0.80915 37.576 2 Median 1.1039 1.0554 NaN 1 0 Median 0.71718 0.62035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17005000 8895500 8109600 5312500 2409500 2902900 11693000 6486000 5206600 0 0 0 0 0 0 0 0 0 0 0 0 12374 2723 12876 62730;62731 62998;62999 62998 2 GSPLVVISQGK NSSLEYNIFEGMECRGSPLVVISQGKIVLE MECRGSPLVVISQGKIVLEDGTLHVTEGSG R G S G K I 0 0 0 0 0 1 0 2 0 1 1 1 0 0 1 2 0 0 0 2 0 0 11 0 1083.6288 Q16555;A0A1C7CYX9 Q16555 441 451 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.0032932 50.108 By MS/MS By MS/MS By MS/MS 1 1 2 0.745 0.75458 30.924 4 Median 0.70634 0.66603 NaN 1 0 Median 1.54 1.299 NaN 1 0 Median 0.72728 0.75458 14.148 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22805000 11904000 10901000 9871100 5678300 4192800 6734100 2390300 4343900 6199900 3835800 2364200 0 0 0 0 0 0 0 0 0 12375 328 12877 62732;62733;62734;62735 63000;63001;63002;63003 63000 4 GSPMEISLPIALSK GQEVKYALGERQSYKGSPMEISLPIALSKN KGSPMEISLPIALSKNQEIVIEISFETSPK K G S S K N 1 0 0 0 0 0 1 1 0 2 2 1 1 0 2 3 0 0 0 0 0 0 14 0 1441.7851 P09960 P09960 84 97 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.00015703 80.014 By MS/MS By MS/MS 2 1 0.78275 0.74904 1.3164 3 Median 0.7818 0.74082 1.6295 2 0 Median 0.89416 0.74904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32705000 17928000 14777000 21488000 11873000 9615000 11217000 6055500 5161600 0 0 0 0 0 0 0 0 0 0 0 0 12376 1924 12878;12879 62736;62737;62738 63004;63005;63006 63006 713 3 GSPNANEPPLVFVGK KGSDEPPVFLEIHYKGSPNANEPPLVFVGK GSPNANEPPLVFVGKGITFDSGGISIKASA K G S G K G 1 0 2 0 0 0 1 2 0 0 1 1 0 1 3 1 0 0 0 2 0 0 15 0 1524.7936 P28838;H0Y9Q1 P28838 268 282 LAP3 Cytosol aminopeptidase yes no 2 0.0076073 32.946 By MS/MS 1 0.68153 0.63711 NaN 1 Median 0.68153 0.63711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8022600 5167100 2855500 8022600 5167100 2855500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12377 2167 12880 62739 63007;63008 63008 2 GSPVHIHPSSALHEQETK ARRSVGRTFCTMDGRGSPVHIHPSSALHEQ VHIHPSSALHEQETKLEWIIFHEVLVTTKV R G S T K L 1 0 0 0 0 1 2 1 3 1 1 1 0 0 2 3 1 0 0 1 0 0 18 0 1952.9704 Q8IX18 Q8IX18 647 664 DHX40 Probable ATP-dependent RNA helicase DHX40 yes yes 4 0.057714 8.6494 By MS/MS By matching 1 1 0.87876 0.84546 23.302 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67356 0.71702 NaN 1 0 Median 1.1465 0.9969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2475300 1313700 1161700 0 0 0 0 0 0 1618700 957770 660940 856630 355910 500730 0 0 0 0 0 0 12378 3332 12881 62740;62741 63009 63009 1 GSPVSSLPAVGK RKLWVDRYLTFMEERGSPVSSLPAVGKKPL EERGSPVSSLPAVGKKPLDLFRLYVCVKEI R G S G K K 1 0 0 0 0 0 0 2 0 0 1 1 0 0 2 3 0 0 0 2 0 0 12 0 1097.6081 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;H0Y2R3;H0Y3S9 A0A3F2YNW7 1167 1178 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.063502 41.54 By MS/MS 1 0.59546 0.66332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59546 0.66332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733400 3114000 1619400 0 0 0 0 0 0 4733400 3114000 1619400 0 0 0 0 0 0 0 0 0 12379 449 12882 62742 63010 63010 1 GSPWVSVVDR HAGEWARKPLRFYVRGSPWVSVVDRVAEQD RFYVRGSPWVSVVDRVAEQDTQA_______ R G S D R V 0 1 0 1 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 3 0 0 10 0 1100.5615 P29372 P29372 281 290 MPG DNA-3-methyladenine glycosylase yes yes 2 0.008196 46.819 By MS/MS By MS/MS By matching 2 1 1 0.50641 0.49211 188.78 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3424 2.5272 277.29 2 0 Median 0.40568 0.33849 NaN 1 0 Median 0.63214 0.68079 NaN 1 0 Median NaN NaN NaN 0 0 Median 65137000 36925000 28212000 0 0 0 0 0 0 47389000 24173000 23216000 15761000 11441000 4320600 1986100 1311000 675180 0 0 0 12380 2170 12883 62743;62744;62745;62746 63011;63012;63013;63014 63013 4 GSQAQPDSPSAQLALIAASQSFLQPGGK KAVAEQIPLLVQGVRGSQAQPDSPSAQLAL ALIAASQSFLQPGGKMVAAAKASVPTIQDQ R G S G K M 5 0 0 1 0 5 0 3 0 1 3 1 0 1 3 5 0 0 0 0 0 0 28 0 2753.3984 Q9Y490 Q9Y490 972 999 TLN1 Talin-1 yes yes 3 0.015717 21.948 By MS/MS 1 0.78278 0.86841 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78278 0.86841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1303700 784430 519220 0 0 0 0 0 0 1303700 784430 519220 0 0 0 0 0 0 0 0 0 12381 4441 12884 62747 63015 63015 1 GSQELGMSNVQELSLR FERLVNDLSKIAQGRGSQELGMSNVQELSL SQELGMSNVQELSLRKKGLECLVSILKCMV R G S L R K 0 1 1 0 0 2 2 2 0 0 3 0 1 0 0 3 0 0 0 1 0 0 16 0 1746.857 Q9Y6D6;E5RIF2 Q9Y6D6 594 609 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes no 2 0.0091754 45.28 By MS/MS By matching 1 1 1.0998 1.0272 1.9966 2 Median 1.0546 1.0418 NaN 1 0 Median 1.1468 1.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305300 1793800 1511500 2859100 1610200 1248900 446200 183550 262650 0 0 0 0 0 0 0 0 0 0 0 0 12382 850 12885 62748;62749 63016 63016 0 GSQIDSHSSNSNYHDSWETR GRVPELPEKGSRGSRGSQIDSHSSNSNYHD SHSSNSNYHDSWETRSSYPERDRYPERDNR R G S T R S 0 1 2 2 0 1 1 1 2 1 0 0 0 0 0 6 1 1 1 0 0 0 20 0 2305.9584 Q5T200 Q5T200 580 599 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 3;4 0.00049928 28.65 By MS/MS By MS/MS 2 2 1.0609 1.0469 45.066 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91243 1.0093 11.541 2 0 Median 1.7839 1.5672 63.427 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10867000 5477400 5389600 0 0 0 0 0 0 7863300 4197600 3665700 3003700 1279800 1723900 0 0 0 0 0 0 12383 3082 12886 62750;62751;62752;62753 63017;63018;63019;63020 63018 3 GSQSYYTVAHAISER KQDVDDEYSMQYSARGSQSYYTVAHAISER GSQSYYTVAHAISERVEKQSALLINGTLKH R G S E R V 2 1 0 0 0 1 1 1 1 1 0 0 0 0 0 3 1 0 2 1 0 0 15 0 1667.7903 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RQE1 P51531 697 711 SMARCA2 Probable global transcription activator SNF2L2 yes no 2;3 1.3558E-07 138.75 By MS/MS By MS/MS By matching 2 2 1 0.99089 0.94471 20.745 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92671 1.0101 9.4686 2 0 Median 1.1622 1.0207 13.328 2 1 Median NaN NaN NaN 0 0 Median 0.79754 0.66307 NaN 1 0 Median 61234000 29856000 31378000 0 0 0 0 0 0 55949000 27450000 28499000 4822900 2161300 2661600 0 0 0 461890 244710 217180 12384 2433 12887 62754;62755;62756;62757;62758 63021;63022;63023;63024;63025;63026;63027 63021 7 GSRGGSGGSYGGGGSGGGYGGGSGSR IGLGGRGGSGGSYGRGSRGGSGGSYGGGGS GGGSGGGYGGGSGSRGGSGGSYGGGSGSGG R G S S R G 0 2 0 0 0 0 0 16 0 0 0 0 0 0 0 6 0 0 2 0 0 0 26 1 2090.875 P35527;CON__P35527;K7EQQ3 P35527 488 513 KRT9 Keratin, type I cytoskeletal 9 yes no 3 0.004154 28.145 By MS/MS 1 0.10926 0.11033 NaN 1 Median NaN NaN NaN 0 0 Median 0.10926 0.11033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625670 579830 45840 0 0 0 625670 579830 45840 0 0 0 0 0 0 0 0 0 0 0 0 + 12385 2242 12888 62759 63028 63028 1 GSSAAGLTASVMR FVEKCSPIGVYTSGKGSSAAGLTASVMRDP GKGSSAAGLTASVMRDPSSRNFIMEGGAMV K G S M R D 3 1 0 0 0 0 0 2 0 0 1 0 1 0 0 3 1 0 0 1 0 0 13 0 1206.6027 P33992;B1AHB1 P33992 408 420 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 3.8936E-09 129.7 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.2296 1.1454 23.849 6 Median 1.8737 1.7719 NaN 1 1 Median 1.3923 1.2034 NaN 1 1 Median 1.1117 1.1194 13.71 3 3 Plateau 1.3601 1.172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91925000 41094000 50831000 27208000 9960500 17248000 10459000 4443300 6016000 50685000 25190000 25495000 3572400 1500600 2071800 0 0 0 0 0 0 12386 2224 12889 62760;62761;62762;62763;62764;62765 63029;63030;63031;63032;63033;63034 63032 6 GSSAAGLTASVMRDPSSR FVEKCSPIGVYTSGKGSSAAGLTASVMRDP AAGLTASVMRDPSSRNFIMEGGAMVLADGG K G S S R N 3 2 0 1 0 0 0 2 0 0 1 0 1 0 1 5 1 0 0 1 0 0 18 1 1748.8475 P33992;B1AHB1 P33992 408 425 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.007276 24.41 By MS/MS 2 0.84262 0.88943 4.516 2 Median 0.84262 0.88943 4.516 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13722000 8280700 5441100 13722000 8280700 5441100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12387 2224 12890 62766;62767 63035;63036 63035 2 GSSASLVLK SHPADSVVSVLNKEKGSSASLVLKRLGFKG VLNKEKGSSASLVLKRLGFKGVWKGLFARI K G S L K R 1 0 0 0 0 0 0 1 0 0 2 1 0 0 0 3 0 0 0 1 0 0 9 0 860.49673 Q00325 Q00325 296 304 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 0.0091464 49.423 By matching By MS/MS By matching 2 2 1 1.2632 1.2361 20.402 5 Median 1.0174 1.0078 1.214 2 0 Median 1.7026 1.5133 3.334 2 0 Median 1.2632 1.2361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25310000 9352000 15958000 2203000 895010 1308000 22140000 7974500 14165000 967710 482470 485230 0 0 0 0 0 0 0 0 0 12388 2674 12891 62768;62769;62770;62771;62772 63037;63038 63037 2 GSSASLVLKR SHPADSVVSVLNKEKGSSASLVLKRLGFKG LNKEKGSSASLVLKRLGFKGVWKGLFARII K G S K R L 1 1 0 0 0 0 0 1 0 0 2 1 0 0 0 3 0 0 0 1 0 0 10 1 1016.5978 Q00325 Q00325 296 305 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 0.00054185 80.165 By MS/MS By MS/MS 1 1 1.3191 1.2895 22.238 2 Median 1.0748 1.1018 NaN 1 1 Median 1.619 1.509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7776000 3119800 4656200 2945300 1398200 1547100 4830700 1721600 3109100 0 0 0 0 0 0 0 0 0 0 0 0 12389 2674 12892 62773;62774 63039;63040 63040 2 GSSAVGLTAYVMKDPETR YVYNLVPRGQYTSGKGSSAVGLTAYVMKDP AVGLTAYVMKDPETRQLVLQTGALVLSDNG K G S T R Q 2 1 0 1 0 0 1 2 0 0 1 1 1 0 1 2 2 0 1 2 0 0 18 1 1880.9302 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 487 504 MCM4 DNA replication licensing factor MCM4 yes no 2;3 2.5998E-10 101.6 By MS/MS By matching By MS/MS 2 1 1 0.7611 0.82728 14.402 4 Median 0.68658 0.71586 14.633 2 0 Median 0.93731 0.88842 NaN 1 0 Median 0.76119 0.86206 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58742000 32803000 25938000 38608000 21808000 16800000 2058800 1106900 951860 18075000 9888500 8186100 0 0 0 0 0 0 0 0 0 12390 441 12893 62775;62776;62777;62778 63041;63042;63043;63044;63045 63043 5 GSSEQAESDNMDVPPEDDSK RALKAVSDWIDEQEKGSSEQAESDNMDVPP AESDNMDVPPEDDSKEGAGEQKTEHMTRTL K G S S K E 1 0 1 4 0 1 3 1 0 0 0 1 1 0 2 4 0 0 0 1 0 0 20 0 2135.8437 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6 Q12906 55 74 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.00087905 34.179 By MS/MS By matching 1 1 0.66237 0.64679 0.05424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5891 0.64703 NaN 1 0 Median 0.74474 0.64654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5051300 3086500 1964800 0 0 0 0 0 0 3399300 2256300 1143000 1651900 830200 821750 0 0 0 0 0 0 12391 2769 12894 62779;62780 63046 63046 1 GSSEQAESDNMDVPPEDDSKEGAGEQK RALKAVSDWIDEQEKGSSEQAESDNMDVPP VPPEDDSKEGAGEQKTEHMTRTLRGVMRVG K G S Q K T 2 0 1 4 0 2 5 3 0 0 0 2 1 0 2 4 0 0 0 1 0 0 27 1 2835.1625 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09 Q12906 55 81 ILF3 Interleukin enhancer-binding factor 3 yes no 3 0.044721 11.003 By MS/MS By matching By MS/MS 1 1 1 0.61221 0.6622 4.9853 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57931 0.6622 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61221 0.68499 NaN 1 0 Median 0.71548 0.62096 NaN 1 0 Median 8406000 4886900 3519100 0 0 0 0 0 0 5037300 3053400 1983900 0 0 0 2045000 1247600 797400 1323700 585930 737780 12392 2769 12895 62781;62782;62783 63047;63048 63047 2 GSSFEMTDDDSAIR SMTQQDSHAPLRDSRGSSFEMTDDDSAIRA RGSSFEMTDDDSAIRALTQFPLPKNLLAKV R G S I R A 1 1 0 3 0 0 1 1 0 1 0 0 1 1 0 3 1 0 0 0 0 0 14 0 1529.6304 H7BXY3;Q7L2E3 H7BXY3 196 209 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 6.4816E-06 93.258 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.2833 1.1298 14.631 5 Median 0.93447 0.90342 NaN 1 0 Median 1.3438 1.1752 NaN 1 0 Median 0.9684 1.065 NaN 1 0 Median 1.3266 1.1298 NaN 1 0 Median 1.2833 1.349 NaN 1 0 Median NaN NaN NaN 0 0 Median 20609000 9279600 11330000 5885900 2652800 3233100 1125200 447740 677430 7415100 3557900 3857200 1913500 846950 1066500 4269600 1774200 2495400 0 0 0 12393 1244 12896 62784;62785;62786;62787;62788;62789 63049;63050;63051;63052;63053 63049 3 GSSGGGCFGGSSGGYGGLGGFGGGSFR GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY GGYGGLGGFGGGSFRGSYGSSSFGGSYGGI R G S F R G 0 1 0 0 1 0 0 15 0 0 1 0 0 3 0 5 0 0 1 0 0 0 27 0 2341.9771 P13645;CON__P13645 P13645 60 86 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 3.3137E-68 145.61 By MS/MS By MS/MS By MS/MS 3 1 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40446000 40446000 0 16216000 16216000 0 3225000 3225000 0 0 0 0 0 0 0 21005000 21005000 0 0 0 0 + 12394 756 12897 62790;62791;62792;62793;62794;62795;62796;62797;62798;62799 63054;63055;63056;63057;63058;63059;63060;63061;63062;63063 63055 10 GSSGGSGAKPSDAASEAARPATSTLNR NNQLFAPGGRLSWGKGSSGGSGAKPSDAAS AASEAARPATSTLNRFSALQQAVPTESTDN K G S N R F 6 2 1 1 0 0 1 4 0 0 1 1 0 0 2 6 2 0 0 0 0 0 27 2 2502.2059 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 933 959 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3;4 1.6191E-09 49.638 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 1 1 0.75355 0.79778 17.206 12 Median 0.72885 0.76318 3.8405 4 0 Median 0.77475 0.85943 20.387 4 0 Median 0.87359 1.0498 9.8942 2 0 Median 0.8099 0.81126 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74029 0.69108 NaN 1 0 Median 76823000 41685000 35138000 46176000 25265000 20911000 12838000 7012400 5825300 11484000 5904100 5580100 2924100 1586000 1338100 0 0 0 3401400 1918200 1483200 12395 894 12898 62800;62801;62802;62803;62804;62805;62806;62807;62808;62809;62810;62811 63064;63065;63066;63067;63068;63069;63070;63071;63072;63073;63074;63075;63076;63077;63078 63066 15 GSSGSVVVDLLYWR APAAPPSTPAAPKRRGSSGSVVVDLLYWRD RGSSGSVVVDLLYWRDIKKTGVVFGASLFL R G S W R D 0 1 0 1 0 0 0 2 0 0 2 0 0 0 0 3 0 1 1 3 0 0 14 0 1536.7936 F8W914 F8W914 152 165 RTN4 Reticulon yes yes 2 0.0020186 45.359 By MS/MS 2 1.3277 1.1229 5.5885 2 Median NaN NaN NaN 0 0 Median 1.3277 1.1229 5.5885 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3456600 1539100 1917500 0 0 0 3456600 1539100 1917500 0 0 0 0 0 0 0 0 0 0 0 0 12396 1087 12899 62812;62813 63079;63080;63081 63080 3 GSSGVGLTAAVLR YIDRLAPRSQYTTGRGSSGVGLTAAVLRDS GRGSSGVGLTAAVLRDSVSGELTLEGGALV R G S L R D 2 1 0 0 0 0 0 3 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1186.667 P33993 P33993 408 420 MCM7 DNA replication licensing factor MCM7 yes yes 2 4.5E-05 125.74 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1 1.0827 1.0041 17.274 8 Median 0.82582 0.79508 14.673 2 0 Median 1.1795 1.0215 5.1546 2 0 Median 0.83599 0.84009 NaN 1 0 Median 1.4575 1.2542 NaN 1 0 Median 1.0319 1.0758 NaN 1 0 Median 1.2555 1.0236 NaN 1 0 Median 150040000 76155000 73886000 58996000 30735000 28261000 38685000 17453000 21232000 44980000 24348000 20632000 1117100 471800 645250 5318100 2702000 2616100 945530 444720 500820 12397 2225 12900 62814;62815;62816;62817;62818;62819;62820;62821 63082;63083;63084;63085 63083 4 GSSGVGLTAAVTTDQETGER YVLCTAPRAIPTTGRGSSGVGLTAAVTTDQ GLTAAVTTDQETGERRLEAGAMVLADRGVV R G S E R R 2 1 0 1 0 1 2 4 0 0 1 0 0 0 0 2 4 0 0 2 0 0 20 0 1934.9181 P25205;J3KQ69;A0A499FHX9 P25205 372 391 MCM3 DNA replication licensing factor MCM3 yes no 2;3 1.5566E-25 176.91 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 1 4 2 1 1 0.92894 0.97608 13.956 13 Median 0.8891 0.85881 13.645 4 0 Median 1.1558 0.9996 NaN 1 0 Median 0.85287 0.90211 10.705 4 0 Median 1.2102 1.039 19.595 2 0 Median 0.92894 0.98015 NaN 1 0 Median 1.3846 1.1386 NaN 1 0 Median 122440000 62086000 60357000 53725000 27332000 26393000 5951900 2709000 3242900 54169000 28155000 26014000 4273500 1906100 2367400 3862500 1764900 2097600 461130 218750 242390 12398 2129 12901 62822;62823;62824;62825;62826;62827;62828;62829;62830;62831;62832;62833;62834 63086;63087;63088;63089;63090;63091;63092;63093;63094;63095;63096;63097;63098;63099;63100;63101;63102;63103;63104 63094 19 GSSGVGLTAAVTTDQETGERR YVLCTAPRAIPTTGRGSSGVGLTAAVTTDQ LTAAVTTDQETGERRLEAGAMVLADRGVVC R G S R R L 2 2 0 1 0 1 2 4 0 0 1 0 0 0 0 2 4 0 0 2 0 0 21 1 2091.0192 P25205;J3KQ69;A0A499FHX9 P25205 372 392 MCM3 DNA replication licensing factor MCM3 yes no 3 5.6885E-05 52.045 By MS/MS By MS/MS 1 1 0.95939 1.087 11.301 2 Median 1.0598 1.1775 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8685 1.0035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10037000 5209100 4827700 4988900 2347500 2641400 0 0 0 5047900 2861600 2186300 0 0 0 0 0 0 0 0 0 12399 2129 12902 62835;62836 63105;63106 63105 2 GSSLHLHVSKPPR QDNVAFVLCLDTVGRGSSLHLHVSKPPREG GRGSSLHLHVSKPPREGTLQHAFLRELETV R G S P R E 0 1 0 0 0 0 0 1 2 0 2 1 0 0 2 3 0 0 0 1 0 0 13 1 1413.7841 Q969V3;K7EMW4;K7ELZ9;K7ENM2;A0A0C4DGP7;K7EQ66 Q969V3 317 329 NCLN Nicalin yes no 3 0.066202 21.942 By MS/MS 1 1.662 1.5184 NaN 1 Median NaN NaN NaN 0 0 Median 1.662 1.5184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2557400 915880 1641500 0 0 0 2557400 915880 1641500 0 0 0 0 0 0 0 0 0 0 0 0 12400 3589 12903 62837 63107 63107 1 GSSLHVGSDLLK ETDVNFQGKNLDTVKGSSLHVGSDLLKFME TVKGSSLHVGSDLLKFMEPVTMQESGTFAF K G S L K F 0 0 0 1 0 0 0 2 1 0 3 1 0 0 0 3 0 0 0 1 0 0 12 0 1211.651 O15031 O15031 697 708 PLXNB2 Plexin-B2 yes yes 3 0.050763 25.914 By MS/MS 1 1.3548 1.2816 NaN 1 Median 1.3548 1.2816 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2319800 979290 1340500 2319800 979290 1340500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12401 1514 12904 62838 63108 63108 1 GSSNSYAIK TIAECLADELINAAKGSSNSYAIKKKDELE LINAAKGSSNSYAIKKKDELERVA______ K G S I K K 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 3 0 0 1 0 0 0 9 0 925.45051 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 183 191 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.038199 34.173 By MS/MS By matching By matching By matching 1 1 1 1 1.3576 1.1843 9.9482 4 Median 1.1058 1.0442 NaN 1 0 Median 1.5421 1.3181 NaN 1 0 Median 1.3103 1.2267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4067 1.1434 NaN 1 0 Median 4334200 1931100 2403200 2756200 1289400 1466800 764820 300490 464330 746510 307980 438540 0 0 0 0 0 0 66739 33230 33509 12402 1425 12905 62839;62840;62841;62842 63109 63109 1 GSSSGGGYSSGSSSYGSGGR SNVASKAAFGGSGGRGSSSGGGYSSGSSSY GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS R G S G R Q 0 1 0 0 0 0 0 8 0 0 0 0 0 0 0 9 0 0 2 0 0 0 20 0 1739.6983 CON__P35908;CON__P35908v2;P35908 CON__P35908 531 550 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 9.2261E-15 84.566 By MS/MS By MS/MS By MS/MS 8 3 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12038000 12038000 0 0 0 0 6621700 6621700 0 0 0 0 1582100 1582100 0 0 0 0 3834400 3834400 0 + 12403 764;765 12906 62843;62844;62845;62846;62847;62848;62849;62850;62851;62852;62853;62854;62855 63110;63111;63112;63113;63114;63115;63116;63117;63118;63119;63120;63121;63122 63110 13 GSSVVAYEGQSWHDYCFHCK KKCAGCKNPITGFGKGSSVVAYEGQSWHDY AYEGQSWHDYCFHCKKCSV___________ K G S C K K 1 0 0 1 2 1 1 2 2 0 0 1 0 1 0 3 0 1 2 2 0 0 20 0 2416.0001 Q5JXI8 Q5JXI8 234 253 FHL1 yes yes 3 0.056493 8.3138 By MS/MS 1 1.2213 1.0247 NaN 1 Median NaN NaN NaN 0 0 Median 1.2213 1.0247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5180600 2227900 2952700 0 0 0 5180600 2227900 2952700 0 0 0 0 0 0 0 0 0 0 0 0 12404 3060 12907 62856 63123 63123 1 GSSYGVTSTESYK IEAQTRVRGSGLGARGSSYGVTSTESYKET ARGSSYGVTSTESYKETLHKTMVTRFNEAQ R G S Y K E 0 0 0 0 0 0 1 2 0 0 0 1 0 0 0 4 2 0 2 1 0 0 13 0 1364.6096 P98175 P98175 903 915 RBM10 RNA-binding protein 10 yes yes 2 0.017963 32.008 By MS/MS 1 1.3279 1.1128 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3279 1.1128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1077500 462630 614820 0 0 0 0 0 0 0 0 0 1077500 462630 614820 0 0 0 0 0 0 12405 2671 12908 62857 63124 63124 1 GSSYGVTSTESYKETLHK IEAQTRVRGSGLGARGSSYGVTSTESYKET YGVTSTESYKETLHKTMVTRFNEAQ_____ R G S H K T 0 0 0 0 0 0 2 2 1 0 1 2 0 0 0 4 3 0 2 1 0 0 18 1 1972.9378 P98175 P98175 903 920 RBM10 RNA-binding protein 10 yes yes 3;4 1.6416E-08 94.203 By MS/MS By MS/MS By matching By MS/MS 2 2 1 4 1.0286 1.1123 17.589 9 Median 1.2905 1.3655 9.6095 2 0 Median NaN NaN NaN 0 0 Median 1.0375 1.1993 20.285 2 0 Median 1.131 1.0773 NaN 1 0 Median 0.91922 1.0022 14.087 4 0 Median NaN NaN NaN 0 0 Median 57005000 26971000 30035000 3668500 1376500 2292000 0 0 0 21361000 10203000 11158000 1452700 689570 763130 30523000 14701000 15822000 0 0 0 12406 2671 12909 62858;62859;62860;62861;62862;62863;62864;62865;62866 63125;63126;63127;63128;63129;63130;63131;63132 63127 8 GSTAPVGGGAFPTIVER EQGINEFLRELSFGRGSTAPVGGGAFPTIV TAPVGGGAFPTIVEREPWDGRDGELPVEDD R G S E R E 2 1 0 0 0 0 1 4 0 1 0 0 0 1 2 1 2 0 0 2 0 0 17 0 1614.8366 Q15084 Q15084 393 409 PDIA6 Protein disulfide-isomerase A6 yes yes 2 3.1882E-13 130.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 0.90992 0.82088 13.674 7 Median 0.83948 0.7807 NaN 1 0 Median 1.0591 0.8956 14.091 3 0 Plateau 0.84134 0.82088 NaN 1 0 Median 1.1059 0.95408 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1398 1.0079 NaN 1 0 Median 107080000 56263000 50815000 61071000 32595000 28476000 7851900 3930400 3921400 30120000 15754000 14366000 7927000 3932700 3994300 0 0 0 108370 50908 57458 12407 2927 12910 62867;62868;62869;62870;62871;62872;62873 63133;63134;63135;63136;63137;63138;63139;63140 63133 8 GSTAPVGGGAFPTIVEREPWDGR EQGINEFLRELSFGRGSTAPVGGGAFPTIV GAFPTIVEREPWDGRDGELPVEDDIDLSDV R G S G R D 2 2 0 1 0 0 2 5 0 1 0 0 0 1 3 1 2 1 0 2 0 0 23 1 2355.1608 Q15084 Q15084 393 415 PDIA6 Protein disulfide-isomerase A6 yes yes 3 0.014335 17.503 By MS/MS By matching By matching By matching 1 1 1 1 0.77023 0.74754 24.807 4 Median 0.6876 0.69437 NaN 1 0 Median 1.2214 1.1014 NaN 1 0 Median 0.57437 0.62188 NaN 1 0 Median 0.8628 0.80479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22726000 12657000 10069000 17009000 9575500 7433300 1196400 665250 531190 3600300 1880700 1719500 920640 535590 385050 0 0 0 0 0 0 12408 2927 12911 62874;62875;62876;62877 63141 63141 1 GSTDNLMDDIER KHEKEDGAISTIVLRGSTDNLMDDIERAVD VLRGSTDNLMDDIERAVDDGVNTFKVLTRD R G S E R A 0 1 1 3 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 0 0 0 12 0 1364.5878 P50990 P50990 379 390 CCT8 T-complex protein 1 subunit theta yes yes 2 6.1226E-06 149.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 4 1 1.2616 1.1601 22.331 12 Median 1.3538 1.2856 22.248 4 0 Median 1.294 1.112 4.6638 2 0 Median 1.5242 1.5581 28.562 2 0 Median 1.2272 1.0572 4.5822 3 1 Plateau 1.4775 1.49 NaN 1 0 Median NaN NaN NaN 0 0 Median 99878000 44098000 55780000 67832000 29502000 38329000 5447700 2672900 2774800 19400000 8547600 10852000 4489700 2273800 2215900 2708800 1101200 1607500 0 0 0 12409 2423 12912;12913 62878;62879;62880;62881;62882;62883;62884;62885;62886;62887;62888;62889;62890 63142;63143;63144;63145;63146;63147;63148;63149;63150;63151;63152;63153;63154;63155 63150 1128 14 GSTHPQPGVSPPAAPAAPGPK GLSSSPSEILQELGKGSTHPQPGVSPPAAP PGVSPPAAPAAPGPKDGPGETDAFGNSEGK K G S P K D 4 0 0 0 0 1 0 3 1 0 0 1 0 0 7 2 1 0 0 1 0 0 21 0 1919.9854 O94925 O94925 86 106 GLS Glutaminase kidney isoform, mitochondrial yes yes 3 8.4736E-08 50.358 By MS/MS By MS/MS 2 1 0.40243 0.36811 4.8859 3 Median 0.38449 0.37034 6.8922 2 0 Median 0.43029 0.36811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8984900 6390200 2594700 6230300 4438700 1791600 2754700 1951600 803110 0 0 0 0 0 0 0 0 0 0 0 0 12410 1738 12914 62891;62892;62893 63156;63157;63158 63158 3 GSTIETEQKEDKGEDSEPVTSK EMSALLARRRRIAEKGSTIETEQKEDKGED QKEDKGEDSEPVTSKASSTSTPEPTRKPWE K G S S K A 0 0 0 2 0 1 5 2 0 1 0 3 0 0 1 3 3 0 0 1 0 0 22 2 2393.1082 A0A0U1RRM6;Q8N8S7 A0A0U1RRM6 694 715 ENAH Protein enabled homolog yes no 3;4 0.0002605 27.904 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 3 1 0.89307 0.98834 52.033 12 Median 0.80106 0.79988 3.2617 2 0 Median 3.2949 3.2052 78.616 4 0 Linear 0.90142 1.0422 4.7492 2 0 Median 0.915 0.97064 32.784 3 0 Median 1.8872 2.1039 NaN 1 0 Median NaN NaN NaN 0 0 Median 39007000 18032000 20975000 5450100 2730300 2719900 9097100 2958600 6138600 21007000 10663000 10344000 2363200 1229200 1134000 1088800 450420 638350 0 0 0 12411 313 12915 62894;62895;62896;62897;62898;62899;62900;62901;62902;62903;62904;62905 63159;63160;63161;63162;63163;63164;63165;63166;63167;63168 63162 10 GSTLDLSDLEAEK VGWLLVRKHPAVKEKGSTLDLSDLEAEKLV EKGSTLDLSDLEAEKLVMFQRRYYKPGLLM K G S E K L 1 0 0 2 0 0 2 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 13 0 1376.6671 O00767 O00767 197 209 SCD Acyl-CoA desaturase yes yes 2 0.00030544 77.64 By MS/MS By MS/MS 1 2 1.9468 1.7052 54.782 3 Median 0.68509 0.6866 NaN 1 0 Median 2.032 1.7695 5.2298 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20022000 9540300 10482000 12766000 7424500 5341700 7256100 2115700 5140300 0 0 0 0 0 0 0 0 0 0 0 0 12412 1479 12916 62906;62907;62908 63169;63170 63169 2 GSTNLGVNQAGFTLHSAIYAARPDVK SSLVKINLQGDIVDRGSTNLGVNQAGFTLH FTLHSAIYAARPDVKCVVHIHTPAGAAVSA R G S V K C 4 1 2 1 0 1 0 3 1 1 2 1 0 1 1 2 2 0 1 2 0 0 26 1 2686.3827 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25 E7EV99 210 235 ADD1 Alpha-adducin yes no 4 2.0277E-08 40.756 By MS/MS 1 0.72117 0.81753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72117 0.81753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10754000 5658000 5096300 0 0 0 0 0 0 10754000 5658000 5096300 0 0 0 0 0 0 0 0 0 12413 866 12917 62909 63171;63172 63172 2 GSTPYGGVKLEDLIVK GGMESMSNVPYVMNRGSTPYGGVKLEDLIV STPYGGVKLEDLIVKDGLTDVYNKIHMGSC R G S V K D 0 0 0 1 0 0 1 3 0 1 2 2 0 0 1 1 1 0 1 2 0 0 16 1 1674.9192 P24752;H0YEL7 P24752 166 181 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 3 0.033047 15.635 By MS/MS By matching By matching 1 1 1 0.99313 1.0822 26.987 3 Median 0.75071 0.69729 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99313 1.0822 NaN 1 0 Median 1.2795 1.1393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15458000 8876700 6581800 13336000 7738500 5598000 0 0 0 1765300 986130 779180 356670 152070 204600 0 0 0 0 0 0 12414 2126 12918 62910;62911;62912 63173;63174 63174 2 GSTPYKGDDEGIFISR LRQTGGLGISIAGGKGSTPYKGDDEGIFIS STPYKGDDEGIFISRVSEEGPAARAGVRVG K G S S R V 0 1 0 2 0 0 1 3 0 2 0 1 0 1 1 2 1 0 1 0 0 0 16 1 1740.8319 A0A0G2JNZ2;A0A0G2JPP5;Q14160;A0A0G2JMS7;H0YDF9 A0A0G2JNZ2 747 762 SCRIB Protein scribble homolog yes no 3 0.0021564 45.14 By MS/MS 1 0.65491 0.65787 NaN 1 Median 0.65491 0.65787 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11586000 6389200 5197100 11586000 6389200 5197100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12415 283 12919 62913 63175 63175 1 GSTPYSQDSAYSSSTTSTSFKPR QFTPQSSQGTPYTSRGSTPYSQDSAYSSST SAYSSSTTSTSFKPRRSENSYQDAFSRRHF R G S P R R 1 1 0 1 0 1 0 1 0 0 0 1 0 1 2 8 4 0 2 0 0 0 23 1 2441.0983 O15047 O15047 277 299 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 3 6.1703E-18 79.347 By MS/MS 1 0.8663 1.0381 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8663 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17962000 9377300 8585100 0 0 0 0 0 0 17962000 9377300 8585100 0 0 0 0 0 0 0 0 0 12416 1516 12920 62914 63176 63176 1 GSVADYGNLMENQDLLGSPTPPPPPPHQR TGADVADVPPPLPLKGSVADYGNLMENQDL LLGSPTPPPPPPHQRHLPPPLPSKTPPPPP K G S Q R H 1 1 2 2 0 2 1 3 1 0 3 0 1 0 7 2 1 0 1 1 0 0 29 0 3083.4771 A0A096LNH6;Q14185 A0A096LNH6 1827 1855 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 0.0078607 23.054 By MS/MS 1 0.33625 0.37333 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33625 0.37333 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2138300 1762800 375460 0 0 0 0 0 0 2138300 1762800 375460 0 0 0 0 0 0 0 0 0 12417 140 12921 62915 63177 63177 1 GSVDSNWIVGATLEK FGYQLDLPKANLLFKGSVDSNWIVGATLEK GSVDSNWIVGATLEKKLPPLPLTLALGAFL K G S E K K 1 0 1 1 0 0 1 2 0 1 1 1 0 0 0 2 1 1 0 2 0 0 15 0 1574.794 O96008 O96008 316 330 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 2 4.4224E-06 87.618 By MS/MS By matching By matching By matching 1 1 1 1 1.0856 0.90706 6.3735 4 Median 1.0933 1.0056 NaN 1 0 Median 1.0183 0.8648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0779 0.91149 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1028 0.90265 NaN 1 0 Median 45244000 19885000 25359000 39447000 17349000 22098000 407840 237790 170060 0 0 0 2321500 995230 1326300 0 0 0 3068100 1302900 1765200 12418 1806 12922 62916;62917;62918;62919 63178;63179 63178 2 GSVEAASNAHLLQSK CISPSLPPPPLKLLKGSVEAASNAHLLQSK GSVEAASNAHLLQSKSGTQPHAATRLSLQQ K G S S K S 3 0 1 0 0 1 1 1 1 0 2 1 0 0 0 3 0 0 0 1 0 0 15 0 1510.774 Q92766;C9JU34 Q92766 552 566 RREB1 Ras-responsive element-binding protein 1 yes no 3 0.029098 17.078 By MS/MS 1 0.69371 0.7732 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69371 0.7732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3205100 1701900 1503300 0 0 0 0 0 0 3205100 1701900 1503300 0 0 0 0 0 0 0 0 0 12419 3554 12923 62920 63180 63180 1 GSVEEDILER IGQKKQVNIYRLVTKGSVEEDILERAKKKM RLVTKGSVEEDILERAKKKMVLDHLVIQRM K G S E R A 0 1 0 1 0 0 3 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1145.5564 O14646 O14646 916 925 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0012653 85.731 By MS/MS 1 1.2438 1.2782 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2438 1.2782 NaN 1 1 Median NaN NaN NaN 0 0 Median 10849000 4853900 5995400 0 0 0 0 0 0 0 0 0 0 0 0 10849000 4853900 5995400 0 0 0 12420 1486 12924 62921 63181 63181 1 GSVHSVSFSPDGR VSLVCRSVLHHFHFKGSVHSVSFSPDGRKF FKGSVHSVSFSPDGRKFVVTKGNIAQMYHA K G S G R K 0 1 0 1 0 0 0 2 1 0 0 0 0 1 1 4 0 0 0 2 0 0 13 0 1330.6266 Q15269;A0A0B4J2E5 Q15269 97 109 PWP2 Periodic tryptophan protein 2 homolog yes no 3 0.059474 12.383 By MS/MS 1 1.3694 1.4665 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3694 1.4665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1698200 568690 1129500 0 0 0 0 0 0 1698200 568690 1129500 0 0 0 0 0 0 0 0 0 12421 223 12925 62922 63182 63182 1 GSVLEPEGTVEIK INPRHMEMYADRESRGSVLEPEGTVEIKFR SRGSVLEPEGTVEIKFRRKDLVKTMRRVDP R G S I K F 0 0 0 0 0 0 3 2 0 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1356.7137 Q13085;Q59FY4 Q13085 2115 2127 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0017613 50.292 By matching By MS/MS 1 2 0.95296 0.8343 16.765 3 Median 0.65348 0.62861 NaN 1 0 Median 0.95512 0.84018 0.99361 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13118000 7421900 5696400 6142200 4159900 1982300 6976200 3262000 3714100 0 0 0 0 0 0 0 0 0 0 0 0 12422 2784 12926 62923;62924;62925 63183;63184;63185;63186 63184 4 GSVLIPGLVEGSTK LLEKASQEGRSLRNKGSVLIPGLVEGSTKR KGSVLIPGLVEGSTKRKRVLSPEELEDRQK K G S T K R 0 0 0 0 0 0 1 3 0 1 2 1 0 0 1 2 1 0 0 2 0 0 14 0 1355.766 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C179 Q86WJ1 617 630 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00045292 68.069 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12423 3293 12927 62926 63187 63187 1 GSVPLSSSPPATHFPDETEITNPVPK PQKSVVSDLEADDVKGSVPLSSSPPATHFP THFPDETEITNPVPKKNVTVKKTAAKSQSS K G S P K K 1 0 1 1 0 0 2 1 1 1 1 1 0 1 6 4 3 0 0 2 0 0 26 0 2703.3392 P11388 P11388 1386 1411 TOP2A DNA topoisomerase 2-alpha yes yes 3 2.9961E-05 32.264 By MS/MS By matching 1 1 0.49091 0.53375 51.389 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33622 0.37113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71678 0.76763 NaN 1 0 Median NaN NaN NaN 0 0 Median 15249000 10562000 4687000 0 0 0 0 0 0 10893000 7320400 3572200 0 0 0 4356500 3241600 1114900 0 0 0 12424 1963 12928 62927;62928 63188 63188 1 GSVQYLPDWDK QNTAPTNSPTKAVPKGSVQYLPDWDKKREG AVPKGSVQYLPDWDKKREGSQEKDPVETFP K G S D K K 0 0 0 2 0 1 0 1 0 0 1 1 0 0 1 1 0 1 1 1 0 0 11 0 1306.6194 CON__Q58D62 CON__Q58D62 305 315 yes yes 2 0.057391 43.512 By MS/MS 1 0.033754 0.032505 NaN 1 Median 0.033754 0.032505 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2442000 2334500 107520 2442000 2334500 107520 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12425 784 12929 62929 63189 63189 1 GSVSQPSTPSPPKPTGIFQTSANSSFEPVK VGGETDETTVSQNYRGSVSQPSTPSPPKPT GIFQTSANSSFEPVKSHLVGVKPFEADRAN R G S V K S 1 0 1 0 0 2 1 2 0 1 0 2 0 2 6 7 3 0 0 2 0 0 30 1 3058.5247 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 586 615 SEC16A Protein transport protein Sec16A yes no 3 3.7907E-05 28.59 By MS/MS 1 0.36529 0.36044 NaN 1 Median 0.36529 0.36044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4685000 3205100 1479900 4685000 3205100 1479900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12426 1513 12930 62930 63190 63190 1 GSVVNVNPTNTRPQSDTPEIR DGMRPEAIRQDPTRKGSVVNVNPTNTRPQS NPTNTRPQSDTPEIRKYKKRFNSEILCAAL K G S I R K 0 2 3 1 0 1 1 1 0 1 0 0 0 0 3 2 3 0 0 3 0 0 21 1 2280.1458 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;E7EN19;A0A0D9SEY1;O95819 C9J840 647 667 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 yes no 3 0.000102 36.253 By MS/MS 1 2.1868 2.0496 NaN 1 Median NaN NaN NaN 0 0 Median 2.1868 2.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6305300 1746100 4559200 0 0 0 6305300 1746100 4559200 0 0 0 0 0 0 0 0 0 0 0 0 12427 262 12931 62931 63191 63191 1 GSYGDLGGPIITTQVTIPK PQGGSGYDYSYAGGRGSYGDLGGPIITTQV DLGGPIITTQVTIPKDLAGSIIGKGGQRIK R G S P K D 0 0 0 1 0 1 0 4 0 3 1 1 0 0 2 1 3 0 1 1 0 0 19 0 1916.0255 P61978;S4R359;Q5T6W2 P61978 378 396 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 8.662E-10 73.386 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 5 6 7 4 0.91242 0.79857 24.036 30 Median 0.90686 0.85611 37.896 4 0 Median 1.0694 0.91011 15.863 4 0 Median 0.72317 0.67992 45.387 5 3 Median 0.99464 0.83583 8.3015 6 1 Median 0.74291 0.76171 7.1159 7 2 Median 0.93609 0.77425 2.445 4 0 Median 12341000000 7027200000 5313700000 94765000 49937000 44828000 32016000 16001000 16015000 9742900000 5554900000 4188000000 194540000 104370000 90169000 2253300000 1290500000 962830000 23464000 11605000 11860000 12428 2565;3093 12932 62932;62933;62934;62935;62936;62937;62938;62939;62940;62941;62942;62943;62944;62945;62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958;62959;62960;62961 63192;63193;63194;63195;63196;63197;63198;63199;63200;63201;63202;63203;63204;63205;63206;63207;63208 63194 17 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG GHGSYGSGSSSGGYRGGSGGGGGGSSGGRG R G S Y R G 0 1 0 0 0 0 0 20 1 0 0 0 0 0 0 12 0 0 5 0 0 0 39 0 3311.3008 P04264;CON__P04264 P04264 550 588 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 0 270.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 13 12 14 7 6 0.0017369 0.0013547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0017369 0.0013547 NaN 1 1 Median 2663500000 2663300000 218820 406390000 406390000 0 542450000 542450000 0 177510000 177510000 0 786940000 786940000 0 272080000 272080000 0 478160000 477940000 218820 + 12429 1848 12933 62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974;62975;62976;62977;62978;62979;62980;62981;62982;62983;62984;62985;62986;62987;62988;62989;62990;62991;62992;62993;62994;62995;62996;62997;62998;62999;63000;63001;63002;63003;63004;63005;63006;63007;63008;63009;63010;63011;63012;63013;63014;63015;63016;63017;63018;63019;63020;63021;63022;63023;63024;63025;63026 63209;63210;63211;63212;63213;63214;63215;63216;63217;63218;63219;63220;63221;63222;63223;63224;63225;63226;63227;63228;63229;63230;63231;63232;63233;63234;63235;63236;63237;63238;63239;63240;63241;63242;63243;63244;63245;63246;63247;63248;63249;63250;63251;63252;63253;63254;63255;63256;63257;63258;63259;63260;63261;63262;63263;63264;63265;63266;63267;63268;63269;63270;63271;63272;63273;63274;63275;63276;63277;63278;63279;63280;63281;63282;63283;63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296;63297;63298;63299;63300;63301;63302;63303;63304;63305;63306 63261 98 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGR GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG RGGSGGGGGGSSGGRGSGGGSSGGSIGGRG R G S G R G 0 2 0 0 0 0 0 30 1 0 0 0 0 0 0 15 0 0 5 0 0 0 53 1 4298.7127 P04264;CON__P04264 P04264 550 602 KRT1 Keratin, type II cytoskeletal 1 yes no 4 2.7101E-240 222.1 By MS/MS By MS/MS 2 1 0.033128 0.033454 NaN 1 Median NaN NaN NaN 0 0 Median 0.033128 0.033454 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35319000 35038000 281150 0 0 0 27254000 26973000 281150 0 0 0 0 0 0 8065200 8065200 0 0 0 0 + 12430 1848 12934 63027;63028;63029 63307;63308;63309;63310 63308 4 GSYGVVYEAVAGR GSARPRYSLLAEIGRGSYGVVYEAVAGRSG GRGSYGVVYEAVAGRSGARVAVKKIRCDAP R G S G R S 2 1 0 0 0 0 1 3 0 0 0 0 0 0 0 1 0 0 2 3 0 0 13 0 1326.6568 A0A0C4DGC9;Q8TDR2 A0A0C4DGC9 72 84 STK35 Serine/threonine-protein kinase 35 yes no 2 0.00054146 71.03 By MS/MS 1 1.1658 1.2631 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1658 1.2631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4040500 1862500 2178000 0 0 0 0 0 0 4040500 1862500 2178000 0 0 0 0 0 0 0 0 0 12431 241 12935 63030 63311 63311 1 GSYSLSHVYTPNDVR SFPYQSITFPELSNKGSYSLSHVYTPNDVR GSYSLSHVYTPNDVRMVIEYARLRGIRVLP K G S V R M 0 1 1 1 0 0 0 1 1 0 1 0 0 0 1 3 1 0 2 2 0 0 15 0 1693.806 P07686;Q5URX0 P07686 258 272 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2;3 9.5811E-10 151.13 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.4279 1.2191 20.665 6 Median 0.95394 0.90757 6.5253 2 0 Median 1.4416 1.2191 4.8705 2 0 Median 1.4637 1.4025 NaN 1 0 Median 1.736 1.4358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149630000 72015000 77619000 124700000 61908000 62796000 18480000 7339400 11140000 4953300 2223700 2729500 1497600 544550 953000 0 0 0 0 0 0 12432 1888 12936 63031;63032;63033;63034;63035;63036 63312;63313;63314;63315;63316;63317;63318;63319 63318 7 GSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPR KETVVSRWRADPWARGSYSYVAAGSSGNDY TPGPSIPGAPQPIPRLFFAGEHTIRNYPAT R G S P R L 4 1 1 2 0 2 0 5 0 3 1 0 1 0 7 5 1 0 3 1 0 0 37 0 3730.7937 O60341;R4GMQ1;R4GMP9 O60341 759 795 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.05404 12.499 By MS/MS 1 0.2451 0.26165 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2451 0.26165 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5000000 4358300 641700 0 0 0 0 0 0 5000000 4358300 641700 0 0 0 0 0 0 0 0 0 12433 1613 12937 63037 63320 63320 1 GSYVSIHSSGFR AGGDGAEAPAKKDVKGSYVSIHSSGFRDFL DVKGSYVSIHSSGFRDFLLKPELLRAIVDC K G S F R D 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 4 0 0 1 1 0 0 12 0 1295.6258 O00148;K7EQN7;K7EPJ3;K7EN69;K7ENP6;K7EL56;K7EIL8;F6SXL5;Q13838;Q5STU3;F6WLT2;A0A0A0MT12;F6TRA5;F6S4E6;F6R6M7;F6QYI9;A0A0G2JJL7;A0A0G2JHN7;F6S2B7;F6U6E2 Q13838 37 48 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 9 7 4 7 1.2024 1.1366 13.782 33 Median 1.1605 1.113 2.7428 3 1 Median 1.3606 1.1412 18.412 5 0 Median 1.0896 1.0332 17.399 7 1 Median 1.3459 1.1522 8.5107 7 0 Median 1.1593 1.157 4.0559 4 1 Median 1.2908 1.0198 17.641 7 1 Median 2482000000 1113200000 1368800000 48789000 22201000 26588000 73481000 31010000 42471000 875800000 411230000 464580000 1232300000 537660000 694640000 164470000 75742000 88731000 87162000 35380000 51781000 12434 2842;1441 12938 63038;63039;63040;63041;63042;63043;63044;63045;63046;63047;63048;63049;63050;63051;63052;63053;63054;63055;63056;63057;63058;63059;63060;63061;63062;63063;63064;63065;63066;63067;63068;63069;63070;63071;63072 63321;63322;63323;63324;63325;63326;63327;63328;63329;63330;63331;63332;63333;63334;63335;63336;63337;63338;63339;63340;63341;63342;63343;63344;63345;63346;63347;63348;63349;63350;63351;63352;63353;63354;63355;63356;63357;63358;63359;63360;63361;63362;63363 63353 43 GTAAEMVAVK FFVTLGAVPIIRCSRGTAAEMVAVKLDKKL IRCSRGTAAEMVAVKLDKKLRENLRDARNS R G T V K L 3 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 10 0 975.50592 Q8WVM8;G3V5E2;H0YJY1 Q8WVM8 215 224 SCFD1 Sec1 family domain-containing protein 1 yes no 2 0.059316 42.19 By MS/MS 1 0.81182 0.70165 NaN 1 Median NaN NaN NaN 0 0 Median 0.81182 0.70165 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1697700 867770 829930 0 0 0 1697700 867770 829930 0 0 0 0 0 0 0 0 0 0 0 0 12435 3503 12939 63073 63364 63364 1 GTADAFIVR EGFITLTYKGPLSAKGTADAFIVRFVCNDD GPLSAKGTADAFIVRFVCNDDVYSGPLKFL K G T V R F 2 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 948.50288 P11717 P11717 1031 1039 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.017382 66.073 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12436 1969 12940 63074 63365 63365 1 GTADVTHDLQEMKEESR RNEENRAKSVLKKLRGTADVTHDLQEMKEE ADVTHDLQEMKEESRQMMREKKVTILELFR R G T S R Q 1 1 0 2 0 1 3 1 1 0 1 1 1 0 0 1 2 0 0 1 0 0 17 1 1944.8847 P11166 P11166 233 249 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 yes yes 3 1.5308E-07 89.261 By MS/MS By MS/MS 2 1 1.5596 1.5717 50.724 3 Median 1.6025 1.6418 6.1662 2 0 Median 0.7402 0.68418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36494000 16965000 19529000 21107000 8396100 12711000 15387000 8568700 6818600 0 0 0 0 0 0 0 0 0 0 0 0 12437 1951 12941 63075;63076;63077 63366;63367 63367 1 GTAFGGWK IATRPFQLVTGRTWKGTAFGGWKSVESVPK VTGRTWKGTAFGGWKSVESVPKLVSEYMSK K G T W K S 1 0 0 0 0 0 0 3 0 0 0 1 0 1 0 0 1 1 0 0 0 0 8 0 822.40244 P11766 P11766 316 323 ADH5 Alcohol dehydrogenase class-3 yes yes 2 0.020489 46.37 By MS/MS By MS/MS 1 3 1.4843 1.2938 12.276 4 Median 1.1538 1.1453 NaN 1 0 Median 1.4888 1.2977 10.182 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9306200 3927500 5378700 3420800 1519800 1901000 5885400 2407700 3477700 0 0 0 0 0 0 0 0 0 0 0 0 12438 1970 12942 63078;63079;63080;63081 63368;63369;63370 63370 3 GTALGSVPGGSITK ESLGVPTAQEASVLRGTALGSVPGGSITKG RGTALGSVPGGSITKGIPSTRVPSDSAITY R G T T K G 1 0 0 0 0 0 0 4 0 1 1 1 0 0 1 2 2 0 0 1 0 0 14 0 1243.6772 C9J7T7;A0A384DVL6;C9JE98;C9J0Q5;Q9Y618;C9JQE8 C9J7T7 745 758 NCOR2 Nuclear receptor corepressor 2 yes no 2 0.0031055 39.266 By MS/MS 1 0.69283 0.75008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69283 0.75008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3565000 2084200 1480800 0 0 0 0 0 0 3565000 2084200 1480800 0 0 0 0 0 0 0 0 0 12439 409 12943 63082 63371 63371 1 GTALVLAR DSFLLSPEAAVGLLKGTALVLARLPLDKIT AAVGLLKGTALVLARLPLDKITECLSELCS K G T A R L 2 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 799.49159 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 564 571 TNPO3 Transportin-3 yes no 2 0.013171 53.554 By MS/MS 1 1.8807 1.6585 NaN 1 Median NaN NaN NaN 0 0 Median 1.8807 1.6585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1363100 606480 756670 0 0 0 1363100 606480 756670 0 0 0 0 0 0 0 0 0 0 0 0 12440 4461 12944 63083 63372 63372 1 GTASTSSNSASSFVVFDGANRR SNSPLMPNVLQTLSRGTASTSSNSASSFVV NSASSFVVFDGANRRNRLSFNSEGVRANVA R G T R R N 3 2 2 1 0 0 0 2 0 0 0 0 0 2 0 6 2 0 0 2 0 0 22 1 2217.041 Q15911 Q15911 546 567 ZFHX3 Zinc finger homeobox protein 3 yes yes 3 0.052796 7.2761 By MS/MS 1 0.91119 1.0014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91119 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4174300 2142100 2032100 0 0 0 0 0 0 4174300 2142100 2032100 0 0 0 0 0 0 0 0 0 12441 2977 12945 63084 63373 63373 1 GTATFDGTAIANAVVK HATAHSLVLVDELGRGTATFDGTAIANAVV TATFDGTAIANAVVKELAETIKCRTLFSTH R G T V K E 4 0 1 1 0 0 0 2 0 1 0 1 0 1 0 0 3 0 0 2 0 0 16 0 1534.7991 P52701;A0A494C0M1;A0A087WYT6 P52701 1218 1233 MSH6 DNA mismatch repair protein Msh6 yes no 2 9.5999E-10 134.75 By MS/MS By MS/MS By matching 4 2 1 0.98906 1.0511 41.674 7 Median 1.0248 0.98551 45.402 4 2 Median NaN NaN NaN 0 0 Median 0.90716 1.0524 0.17232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6242 2.1859 NaN 1 0 Median 79545000 39632000 39913000 49756000 24275000 25482000 0 0 0 29360000 15224000 14136000 0 0 0 0 0 0 428420 133200 295220 12442 2453 12946 63085;63086;63087;63088;63089;63090;63091 63374;63375;63376;63377 63376 4 GTAVVNGEFK SCHAPAVTQHAPYFKGTAVVNGEFKDLSLD APYFKGTAVVNGEFKDLSLDDFKGKYLVLF K G T F K D 1 0 1 0 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1020.524 P30048 P30048 74 83 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.00040727 105.1 By MS/MS By MS/MS By MS/MS 2 2 1 1.4202 1.2608 12.364 5 Median 1.1993 1.1193 16.845 2 0 Median 1.4548 1.2343 5.0158 2 1 Median 1.457 1.3804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53844000 24248000 29596000 37474000 17125000 20349000 12034000 4881000 7153300 4336100 2242600 2093500 0 0 0 0 0 0 0 0 0 12443 2183 12947 63092;63093;63094;63095;63096 63378;63379;63380;63381;63382 63381 5 GTAVVNGEFKDLSLDDFK SCHAPAVTQHAPYFKGTAVVNGEFKDLSLD VVNGEFKDLSLDDFKGKYLVLFFYPLDFTF K G T F K G 1 0 1 3 0 0 1 2 0 0 2 2 0 2 0 1 1 0 0 2 0 0 18 1 1953.9684 P30048 P30048 74 91 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 3 0.026277 15.766 By MS/MS By matching By matching By matching 1 1 1 1 1.1288 1.1266 31.53 4 Median 0.97503 0.99172 NaN 1 0 Median 1.4754 1.3532 NaN 1 0 Median 1.3068 1.2798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66081 0.67753 NaN 1 0 Median NaN NaN NaN 0 0 Median 22609000 11760000 10849000 8119100 3885500 4233700 915320 397560 517760 9157200 4978300 4178900 0 0 0 4417400 2498700 1918700 0 0 0 12444 2183 12948 63097;63098;63099;63100 63383 63383 1 GTAYTFFTPGNLK DYVHRIGRTARSTNKGTAYTFFTPGNLKQA NKGTAYTFFTPGNLKQARELIKVLEEANQA K G T L K Q 1 0 1 0 0 0 0 2 0 0 1 1 0 2 1 0 3 0 1 0 0 0 13 0 1415.7085 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 516 528 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 5.1938E-07 107.21 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 6 3 1 0.93662 0.835 18.948 16 Median 1.1141 1.0058 NaN 1 0 Median 0.98391 0.85658 NaN 1 0 Median 0.81449 0.7904 16.274 4 1 Median 0.93662 0.7744 25.114 6 0 Median 0.86666 0.85929 17.06 3 1 Median 1.0819 0.9091 NaN 1 0 Median 392460000 208120000 184340000 14069000 6228600 7840500 1097700 654130 443620 354290000 189320000 164970000 8465000 4070400 4394600 13745000 7365400 6379600 794540 477760 316780 12445 343 12949 63101;63102;63103;63104;63105;63106;63107;63108;63109;63110;63111;63112;63113;63114;63115;63116 63384;63385;63386;63387;63388;63389;63390;63391;63392;63393;63394;63395;63396;63397;63398;63399;63400 63388 17 GTAYVVYEDIFDAK GPIRQIRVGNTPETRGTAYVVYEDIFDAKN RGTAYVVYEDIFDAKNACDHLSGFNVCNRY R G T A K N 2 0 0 2 0 0 1 1 0 1 0 1 0 1 0 0 1 0 2 2 0 0 14 0 1589.7613 Q9Y3B4 Q9Y3B4 58 71 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.0015468 48.004 By MS/MS By MS/MS By matching 1 2 1 1.0156 0.97509 8.4491 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0303 0.9806 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93904 1.034 13.384 2 0 Median 1.1844 0.96961 NaN 1 0 Median 28003000 13420000 14583000 0 0 0 0 0 0 24025000 11417000 12608000 0 0 0 3593700 1815800 1777900 383660 186680 196980 12446 4415 12950 63117;63118;63119;63120 63401;63402;63403 63403 3 GTDDFDFAGSFQGPR LEVHSKVSTKKSKRKGTDDFDFAGSFQGPR GTDDFDFAGSFQGPRKKKRNLNDSSLFVSA K G T P R K 1 1 0 3 0 1 0 3 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1615.6903 Q03701 Q03701 950 964 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.00035654 57.836 By MS/MS By matching 1 1 0.92818 0.91658 15.56 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93222 1.0232 NaN 1 0 Median 0.92416 0.82108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3042000 1533100 1508900 0 0 0 0 0 0 2895500 1462200 1433300 146480 70839 75641 0 0 0 0 0 0 12447 2710 12951 63121;63122 63404;63405 63404 2 GTDIMYTGTLDCWR FDTVRRRMMMQSGRKGTDIMYTGTLDCWRK KGTDIMYTGTLDCWRKIARDEGGKAFFKGA K G T W R K 0 1 0 2 1 0 0 2 0 1 1 0 1 0 0 0 3 1 1 0 0 0 14 0 1687.7334 P05141 P05141 246 259 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.0027456 41.283 By matching By MS/MS 2 4 1.5802 1.3305 18.918 6 Median 1.0781 1.0642 6.3968 2 0 Median 1.6832 1.4227 11.808 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12093000 5192300 6900600 4174500 2136700 2037900 7918300 3055600 4862700 0 0 0 0 0 0 0 0 0 0 0 0 12448 1861 12952 63123;63124;63125;63126;63127;63128 63406;63407 63406 2 GTDSQAMEEEKPEGHV KAMGKKTSEGVTNEKGTDSQAMEEEKPEGH TDSQAMEEEKPEGHV_______________ K G T H V - 1 0 0 1 0 1 4 2 1 0 0 1 1 0 1 1 1 0 0 1 0 0 16 1 1742.7417 Q13451 Q13451 442 457 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 3 0.00016916 45.614 By matching By MS/MS By matching 1 1 1 1.0041 0.88362 8.148 3 Median 0.79319 0.77495 NaN 1 0 Median 1.0459 0.89973 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0041 0.88362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3695100 1886900 1808100 1503200 803310 699860 1899600 938420 961200 0 0 0 292310 145220 147090 0 0 0 0 0 0 12449 2819 12953 63129;63130;63131 63408;63409 63409 2 GTDTVAGLALIK ETAGIGASAHLVNFKGTDTVAGLALIKKYY NFKGTDTVAGLALIKKYYGTKDPVPGYSVP K G T I K K 2 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1157.6656 P43490;A0A0C4DFS8 P43490 217 228 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.0034313 69.812 By MS/MS 1 0.90252 0.84654 NaN 1 Median 0.90252 0.84654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6800600 3169600 3631100 6800600 3169600 3631100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12450 2326 12954 63132 63410 63410 1 GTDVNVFNTILTTR DSDARALYEAGERRKGTDVNVFNTILTTRS KGTDVNVFNTILTTRSYPQLRRVFQKYTKY K G T T R S 0 1 2 1 0 0 0 1 0 1 1 0 0 1 0 0 4 0 0 2 0 0 14 0 1549.81 P04083 P04083 215 228 ANXA1 Annexin A1 yes yes 2;3 5.4951E-43 223.07 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 1 1.268 1.2196 23.34 13 Median 1.4133 1.4203 7.739 4 0 Median 1.1825 0.98326 5.4241 5 0 Median 1.3383 1.3016 29.453 3 0 Median 1.3246 1.154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 291850000 125380000 166470000 114450000 46550000 67899000 152830000 68651000 84181000 22291000 9178200 13113000 2274400 1001900 1272500 0 0 0 0 0 0 12451 1844 12955 63133;63134;63135;63136;63137;63138;63139;63140;63141;63142;63143;63144;63145 63411;63412;63413;63414;63415;63416;63417;63418;63419;63420;63421;63422;63423;63424;63425;63426 63422 16 GTDYQLSK LESIGVPLEKLKFIKGTDYQLSKEYTLDVY EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ K G T S K E 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 8 0 910.43961 P54577;A0A0C4DGZ5 P54577 120 127 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.013566 52.786 By MS/MS By MS/MS 1 1 1.2083 1.1036 14.165 2 Median 1.2594 1.2198 NaN 1 0 Median 1.1593 0.9984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4019500 1844000 2175500 1195500 591840 603660 2824000 1252200 1571800 0 0 0 0 0 0 0 0 0 0 0 0 12452 2482 12956 63146;63147 63427;63428 63428 2 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK EKDGFPSGTPALNAKGTEAPAVVTEEEDDD ETAPPVIAPRPDHTKSIYTRSVIDPVPAPV K G T T K S 4 1 0 4 0 0 6 1 1 1 0 1 0 0 5 0 4 0 0 3 0 0 31 1 3314.5426 Q13177 Q13177 161 191 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 4 3.4376E-09 41.133 By MS/MS 1 0.41708 0.41824 NaN 1 Median 0.41708 0.41824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13089000 9331800 3756900 13089000 9331800 3756900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12453 2794 12957 63148 63429 63429 1 GTEDALLK IRKLVRSVGRLKSKKGTEDALLKNQRRAQR GRLKSKKGTEDALLKNQRRAQRLLEEIHAM K G T L K N 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 845.44945 Q8NEF9 Q8NEF9 43 50 SRFBP1 Serum response factor-binding protein 1 yes yes 2 0.007444 67.035 By MS/MS 1 1.1678 1.1086 NaN 1 Median 1.1678 1.1086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2183000 1044800 1138200 2183000 1044800 1138200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12454 3429 12958 63149 63430;63431 63431 2 GTEDFIVESLDASFR PANNIVKFLVGFTNKGTEDFIVESLDASFR GTEDFIVESLDASFRYPQDYQFYIQNFTAL K G T F R Y 1 1 0 2 0 0 2 1 0 1 1 0 0 2 0 2 1 0 0 1 0 0 15 0 1684.7944 C9J3L8;C9J5W0;A0A3B3IRT8;E9PAL7;C9IZQ1;P43307 C9J3L8 111 125 SSR1 Translocon-associated protein subunit alpha yes no 2 0.010681 29.936 By MS/MS 1 1.1534 1.1085 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1534 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1562300 706240 856080 0 0 0 0 0 0 1562300 706240 856080 0 0 0 0 0 0 0 0 0 12455 417 12959 63150 63432 63432 1 GTEDITSPHGIPLDLLDR PIVIFASNRGNCVIRGTEDITSPHGIPLDL DITSPHGIPLDLLDRVMIIRTMLYTPQEMK R G T D R V 0 1 0 3 0 0 1 2 1 2 3 0 0 0 2 1 2 0 0 0 0 0 18 0 1947.9902 Q9Y265;E7ETR0;H7C4G5;J3QLR1 Q9Y265 340 357 RUVBL1 RuvB-like 1 yes no 2;3 1.4228E-06 69.522 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 3 1 0.77208 0.6881 20.762 11 Median 0.8405 0.83853 NaN 1 0 Median 0.81161 0.69371 10.376 2 0 Median 0.66453 0.65536 28.584 4 0 Median 0.92064 0.7892 23.812 3 1 Plateau NaN NaN NaN 0 0 Median 0.77208 0.66227 NaN 1 0 Median 110550000 60015000 50535000 2979100 1599300 1379700 23269000 11064000 12204000 74137000 42011000 32126000 9292400 4930800 4361600 0 0 0 873390 409690 463700 12456 4375 12960 63151;63152;63153;63154;63155;63156;63157;63158;63159;63160;63161 63433;63434;63435;63436;63437;63438;63439;63440;63441;63442;63443;63444;63445;63446;63447;63448;63449 63437 17 GTEHSGSTVPSILNR CPVTDLDSIQFALRRGTEHSGSTVPSILNR GTEHSGSTVPSILNRMQTNQTPPTYNKTNK R G T N R M 0 1 1 0 0 0 1 2 1 1 1 0 0 0 1 3 2 0 0 1 0 0 15 0 1553.7798 Q93050;B7Z641;B7Z2A9 Q93050 340 354 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2;3 9.8911E-11 110.92 By MS/MS By MS/MS By matching 1 2 1 0.86999 0.77282 42.492 4 Median 0.745 0.73497 NaN 1 0 Median 0.84057 0.67788 25.639 2 1 Median 1.4081 1.539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47470000 25328000 22142000 8254100 4057300 4196800 35896000 19824000 16073000 3319900 1447400 1872500 0 0 0 0 0 0 0 0 0 12457 3576 12961 63162;63163;63164;63165 63450;63451;63452;63453 63452 3 GTEITHAVVIK GGVPLVKEKPKMFAKGTEITHAVVIKKLNE MFAKGTEITHAVVIKKLNEILQARGKKGTD K G T I K K 1 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 0 2 0 0 11 0 1166.6659 Q99613;B5ME19 Q99613 321 331 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 9.9524E-19 157.96 By MS/MS 1 0.8586 0.72131 NaN 1 Median NaN NaN NaN 0 0 Median 0.8586 0.72131 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38097000 19511000 18586000 0 0 0 38097000 19511000 18586000 0 0 0 0 0 0 0 0 0 0 0 0 12458 3757 12962 63166 63454 63454 1 GTEITHAVVIKK GGVPLVKEKPKMFAKGTEITHAVVIKKLNE FAKGTEITHAVVIKKLNEILQARGKKGTDR K G T K K L 1 0 0 0 0 0 1 1 1 2 0 2 0 0 0 0 2 0 0 2 0 0 12 1 1294.7609 Q99613;B5ME19 Q99613 321 332 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2;3 0.00023115 60.398 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 1 1 1.2636 1.1863 16.674 9 Median 1.0396 1.0865 8.2401 2 0 Median 1.2787 1.1863 14.37 3 0 Median 1.3642 1.5542 11.084 2 0 Median 1.12 1.0669 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3257 1.2002 NaN 1 0 Median 20084000 8822700 11262000 5519900 2568100 2951800 12134000 5157500 6977000 1148800 472090 676680 446940 188670 258270 0 0 0 834210 436410 397790 12459 3757 12963 63167;63168;63169;63170;63171;63172;63173;63174;63175 63455;63456;63457;63458;63459;63460;63461 63458 6 GTELDLSWISK ______________________________ AHNRGTELDLSWISKIQVNHPAVLRRAEQI R G T S K I 0 0 0 1 0 0 1 1 0 1 2 1 0 0 0 2 1 1 0 0 0 0 11 0 1247.6398 Q9Y315;E9PPM8;E9PJ44;E9PJB9 Q9Y315 7 17 DERA Deoxyribose-phosphate aldolase yes no 2 0.0020665 55.549 By matching By MS/MS 1 1 1.0912 0.99094 10.554 2 Median 0.93971 0.91968 NaN 1 0 Median 1.267 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3997800 1832600 2165200 1544300 783840 760480 2453400 1048800 1404700 0 0 0 0 0 0 0 0 0 0 0 0 12460 4402 12964 63176;63177 63462 63462 1 GTEPFVTGVR IPSPIQVIEDDRNNRGTEPFVTGVRGQVPP DRNNRGTEPFVTGVRGQVPPLVTTNFLVKD R G T V R G 0 1 0 0 0 0 1 2 0 0 0 0 0 1 1 0 2 0 0 2 0 0 10 0 1061.5506 P53992;G5EA31;A0A0U1RR49 P53992 341 350 SEC24C Protein transport protein Sec24C yes no 2 0.019982 37.191 By MS/MS By matching 2 1 1.5855 1.4909 1.3809 2 Median NaN NaN NaN 0 0 Median 1.5855 1.4909 1.3809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14894000 7588000 7306300 0 0 0 14281000 7308600 6972700 0 0 0 0 0 0 0 0 0 613000 279360 333630 12461 1134 12965 63178;63179;63180 63463;63464 63463 2 GTEVQVDDIKR IQLITAASLVCRKRKGTEVQVDDIKRVYSL RKRKGTEVQVDDIKRVYSLFLDESRSTQYM K G T K R V 0 1 0 2 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 1 1258.6517 Q9Y230 Q9Y230 418 428 RUVBL2 RuvB-like 2 yes yes 2;3 3.6041E-05 111.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 2 1 1.1668 1.1293 12.91 12 Median 1.0556 1.0568 2.0179 2 0 Median 1.2094 1.1045 10.298 2 0 Median 0.97651 0.98909 11.95 2 0 Median 1.1745 1.1321 3.2147 3 0 Median 1.3206 1.3685 18.274 2 0 Median 1.3065 1.1932 NaN 1 0 Median 44065000 19938000 24127000 7357100 3421100 3936000 7283300 3232500 4050800 13156000 6439400 6716800 6656800 2940100 3716700 8344700 3388500 4956200 1267400 516750 750630 12462 4368 12966 63181;63182;63183;63184;63185;63186;63187;63188;63189;63190;63191;63192 63465;63466;63467;63468;63469;63470;63471;63472;63473;63474;63475;63476;63477;63478;63479;63480;63481;63482 63470 18 GTFHWSGNEQMTK CRQLAEKRMLDPSIKGTFHWSGNEQMTKYE IKGTFHWSGNEQMTKYEMACAIADAFNLPS K G T T K Y 0 0 1 0 0 1 1 2 1 0 0 1 1 1 0 1 2 1 0 0 0 0 13 0 1521.6671 Q9NZL9;H7C0X7 Q9NZL9 246 258 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2;3 4.1832E-05 154.15 By MS/MS 2 0.8982 0.82916 14.214 2 Median 0.8982 0.82916 14.214 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40716000 23955000 16761000 40716000 23955000 16761000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12463 4191 12967 63193;63194 63483;63484 63483 1 GTFIEFR YCLSYIAKIKLPKKRGTFIEFRNGMLNVSP KIKLPKKRGTFIEFRNGMLNVSPIGRSCSQ R G T F R N 0 1 0 0 0 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 0 7 0 868.4443 H3BV55;O15305;H3BPH4;Q92871 H3BV55 90 96 PMM2;PMM1 Phosphomannomutase;Phosphomannomutase 2;Phosphomannomutase 1 yes no 2 0.026054 53.554 By MS/MS 1 1.1027 1.051 NaN 1 Median 1.1027 1.051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4028700 1910800 2117900 4028700 1910800 2117900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12464 1240 12968 63195 63485 63485 1 GTGAASFDEFGNSK NPLLSDGDLSTMIGKGTGAASFDEFGNSKY KGTGAASFDEFGNSKYQNRRTMSSSDRAMM K G T S K Y 2 0 1 1 0 0 1 3 0 0 0 1 0 2 0 2 1 0 0 0 0 0 14 0 1386.6052 B1APE1;B1APE2;Q00403 B1APE1 86 99 GTF2B Transcription initiation factor IIB yes no 2 0.00017439 79.82 By MS/MS By MS/MS By MS/MS 1 1 1 1.0727 1.0069 11.449 3 Plateau 1.0727 1.0069 NaN 1 0 Median 0.95841 0.81216 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.149 0.96825 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11019000 4725200 6293700 6775400 2916900 3858500 1253300 598050 655210 0 0 0 2990200 1210200 1780000 0 0 0 0 0 0 12465 578 12969 63196;63197;63198 63486;63487;63488;63489 63486 4 GTGASGSFKLNK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA QTKGTGASGSFKLNKKAASGEGKPKAKKAG K G T N K K 1 0 1 0 0 0 0 3 0 0 1 2 0 1 0 2 1 0 0 0 0 0 12 1 1165.6091 P10412;Q02539;P16401;P16402;P16403 P16402 99 110 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2 2.2666E-05 114.4 By MS/MS By MS/MS 3 2 1.0897 0.97116 13.557 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87258 0.92629 18.827 3 0 Median 1.1261 0.9815 1.4975 2 0 Median 31080000 16163000 14917000 0 0 0 0 0 0 0 0 0 0 0 0 28770000 15018000 13752000 2309900 1145500 1164400 12466 2028;1937;2029 12970 63199;63200;63201;63202;63203 63490;63491;63492 63491 3 GTGASGSFKLNKK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA TKGTGASGSFKLNKKAASGEGKPKAKKAGA K G T K K A 1 0 1 0 0 0 0 3 0 0 1 3 0 1 0 2 1 0 0 0 0 0 13 2 1293.7041 P10412;Q02539;P16401;P16402;P16403 P16402 99 111 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 0.0001121 76.326 By matching By MS/MS By MS/MS 1 5 2 0.86278 0.94191 8.7533 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83013 0.8568 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83337 0.90778 6.9972 5 0 Median 1.212 1.0402 7.1392 2 0 Median 42180000 21455000 20724000 0 0 0 0 0 0 240550 123600 116940 0 0 0 41034000 20938000 20096000 904700 393950 510750 12467 2028;1937;2029 12971 63204;63205;63206;63207;63208;63209;63210;63211 63493;63494;63495;63496 63494 4 GTGEAEEEYVGPR GNAVRAGVREKRRGRGTGEAEEEYVGPRLS GRGTGEAEEEYVGPRLSRRILQQARQQQEE R G T P R L 1 1 0 0 0 0 4 3 0 0 0 0 0 0 1 0 1 0 1 1 0 0 13 0 1392.6157 Q13895;F8WBL2 Q13895 41 53 BYSL Bystin yes no 2 4.8234E-07 161.17 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.92009 0.84076 20.162 5 Median NaN NaN NaN 0 0 Median 0.98401 0.84076 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84459 0.73417 NaN 1 0 Median 0.93192 0.9662 6.6177 2 0 Median 0.70575 0.60517 NaN 1 0 Median 19198000 9676600 9521300 0 0 0 3198700 1452600 1746200 0 0 0 3733000 1689100 2043900 10946000 5721900 5223800 1320500 813030 507460 12468 2845 12972 63212;63213;63214;63215;63216 63497;63498;63499;63500 63497 4 GTGFGTGSTASGWDVEQALTK HNPTSTEEQQLYWAKGTGFGTGSTASGWDV GSTASGWDVEQALTKQRLEEEHVTCLLQVL K G T T K Q 2 0 0 1 0 1 1 5 0 0 1 1 0 1 0 2 4 1 0 1 0 0 21 0 2068.9702 Q9NR09 Q9NR09 4292 4312 BIRC6 Baculoviral IAP repeat-containing protein 6 yes yes 2 0.0001207 37.954 By MS/MS 1 1.1778 1.1716 NaN 1 Median 1.1778 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5287000 2458500 2828500 5287000 2458500 2828500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12469 4073 12973 63217 63501;63502 63502 2 GTGGVDTAATGGVFDISNLDR SRFPKILENLRLQKRGTGGVDTAATGGVFD TAATGGVFDISNLDRLGKSEVELVQLVIDG R G T D R L 2 1 1 3 0 0 0 5 0 1 1 0 0 1 0 1 3 0 0 2 0 0 21 0 2021.9654 P12532 P12532 354 374 CKMT1A Creatine kinase U-type, mitochondrial yes yes 2 9.1716E-18 107.98 By MS/MS By MS/MS By matching 1 2 1 0.92222 0.95993 31.476 4 Median 1.007 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74377 0.77616 24.132 2 1 Median 1.6295 1.4083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23508000 11725000 11783000 8205700 3866200 4339500 0 0 0 12490000 6680500 5809500 2812700 1178200 1634500 0 0 0 0 0 0 12470 1982 12974 63218;63219;63220;63221 63503;63504;63505;63506;63507 63507 5 GTGGVDTAAVGGVFDVSNADR EKFSEVLKRLRLQKRGTGGVDTAAVGGVFD TAAVGGVFDVSNADRLGFSEVELVQMVVDG R G T D R L 3 1 1 3 0 0 0 5 0 0 0 0 0 1 0 1 2 0 0 4 0 0 21 0 1963.9235 P12277;H0YJG0 P12277 321 341 CKB Creatine kinase B-type yes no 2;3 3.1423E-29 168.5 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 0.96787 0.9241 19.19 10 Median 0.7596 0.74231 7.8619 4 2 Median 1.0727 0.93067 6.9309 3 0 Median 0.98366 1.0724 15.459 2 0 Median NaN NaN NaN 0 0 Median 1.0975 1.1726 NaN 1 0 Median NaN NaN NaN 0 0 Median 297930000 158800000 139140000 241450000 130160000 111290000 7512700 3329500 4183200 47432000 24691000 22741000 0 0 0 1539500 616320 923160 0 0 0 12471 1980 12975 63222;63223;63224;63225;63226;63227;63228;63229;63230;63231 63508;63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519;63520;63521;63522;63523 63509 16 GTGIAAQTAGIAAAAR AFASCGTEGFRNAKKGTGIAAQTAGIAAAA TGIAAQTAGIAAAARAKQKGVIHIRVVVKG K G T A R A 7 1 0 0 0 1 0 3 0 2 0 0 0 0 0 0 2 0 0 0 0 0 16 0 1398.7579 P82912 P82912 123 138 MRPS11 28S ribosomal protein S11, mitochondrial yes yes 2 9.1597E-07 93.258 By MS/MS By MS/MS 1 1 1.2234 1.0951 25.726 2 Median 0.94493 0.91299 NaN 1 0 Median 1.584 1.3136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21163000 9095900 12067000 15004000 6842400 8161300 6159400 2253500 3905900 0 0 0 0 0 0 0 0 0 0 0 0 12472 2655 12976 63232;63233 63524;63525;63526;63527 63524 4 GTGIVSAPVPK GRCGSVLVRLIPAPRGTGIVSAPVPKKLLM PAPRGTGIVSAPVPKKLLMMAGIDDCYTSA R G T P K K 1 0 0 0 0 0 0 2 0 1 0 1 0 0 2 1 1 0 0 2 0 0 11 0 1024.5917 P15880;H0YEN5;E9PQD7;E9PMM9;I3L404;E9PM36 P15880 201 211 RPS2 40S ribosomal protein S2 yes no 2 0.00016036 81.525 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 3 5 0.98231 0.86113 33.085 16 Median 0.5516 0.5218 55.868 2 0 Median 0.92236 0.76089 9.1296 5 1 Median NaN NaN NaN 0 0 Median 1.0186 0.85096 NaN 1 0 Median 0.98142 1.0038 4.5626 3 0 Median 1.1624 0.96044 33.261 5 0 Median 393600000 202410000 191190000 175090000 91562000 83530000 104020000 54301000 49723000 0 0 0 21697000 10996000 10701000 55297000 28908000 26389000 37493000 16644000 20849000 12473 2020 12977 63234;63235;63236;63237;63238;63239;63240;63241;63242;63243;63244;63245;63246;63247;63248;63249 63528;63529;63530;63531;63532;63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543;63544 63534 17 GTGLQPGEEELPDIAPPLVTPDEPK VSIEMPEELDISQLRGTGLQPGEEELPDIA LPDIAPPLVTPDEPKGSLGFYGNEDEDSFC R G T P K G 1 0 0 2 0 1 4 3 0 1 3 1 0 0 6 0 2 0 0 1 0 0 25 0 2598.3065 P45974 P45974 604 628 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 3 0.0050879 25.604 By MS/MS 1 0.32012 0.31805 NaN 1 Median 0.32012 0.31805 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2291900 1755700 536180 2291900 1755700 536180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12474 2332 12978 63250 63545 63545 1 GTGSGLIGASGATMPTDTSK TATKGVPATNPAPGKGTGSGLIGASGATMP LIGASGATMPTDTSKSEKLASRAVAPPTPA K G T S K S 2 0 0 1 0 0 0 5 0 1 1 1 1 0 1 3 4 0 0 0 0 0 20 0 1807.8622 Q14781 Q14781 391 410 CBX2 Chromobox protein homolog 2 yes yes 2 2.8729E-08 70.963 By MS/MS 1 1.0257 1.0532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0257 1.0532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8348900 4084100 4264800 0 0 0 0 0 0 8348900 4084100 4264800 0 0 0 0 0 0 0 0 0 12475 2899 12979 63251 63546;63547 63546 2 GTGSHPWTMAPPPGSTPSR YGPMAAAAAAAAVVRGTGSHPWTMAPPPGS HPWTMAPPPGSTPSRTGGFLGTTSPGPMAE R G T S R T 1 1 0 0 0 0 0 3 1 0 0 0 1 0 5 3 3 1 0 0 0 0 19 0 1919.8948 O43347;H0YHB7 O43347 285 303 MSI1 RNA-binding protein Musashi homolog 1 yes no 3 0.00013369 37.687 By MS/MS By MS/MS 1 1 0.36867 0.38356 7.8007 2 Median 0.40632 0.40531 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.33451 0.36298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9720100 6374000 3346100 3143400 2134600 1008800 0 0 0 6576600 4239300 2337300 0 0 0 0 0 0 0 0 0 12476 1567 12980 63252;63253 63548;63549 63549 2 GTGVIQLYEIQHGDLK VPCSAKFVTMGNFARGTGVIQLYEIQHGDL TGVIQLYEIQHGDLKLLREIEKAKPIKCGT R G T L K L 0 0 0 1 0 2 1 3 1 2 2 1 0 0 0 0 1 0 1 1 0 0 16 0 1769.9312 Q96MX6 Q96MX6 42 57 WDR92 WD repeat-containing protein 92 yes yes 3 0.0031663 26.808 By MS/MS By matching 1 1 1.2938 1.1529 16.08 2 Median 1.376 1.2917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2165 1.029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3299600 1424200 1875400 2997100 1290600 1706500 0 0 0 0 0 0 302470 133610 168870 0 0 0 0 0 0 12477 3705 12981 63254;63255 63550 63550 1 GTGVVTSVPSDSPDDIAALR KVIYVLPMLTIKEDKGTGVVTSVPSDSPDD TSVPSDSPDDIAALRDLKKKQALRAKYGIR K G T L R D 2 1 0 3 0 0 0 2 0 1 1 0 0 0 2 3 2 0 0 3 0 0 20 0 1955.98 Q9P2J5 Q9P2J5 385 404 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 6.9227E-14 106.32 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.78649 0.73259 5.624 4 Median 0.77272 0.74378 NaN 1 0 Median 0.91397 0.78139 NaN 1 0 Median 0.65594 0.72157 NaN 1 0 Median 0.80051 0.68317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27224000 15025000 12199000 18990000 10519000 8470800 2680700 1342200 1338500 4571000 2638500 1932500 981890 525210 456680 0 0 0 0 0 0 12478 4224 12982 63256;63257;63258;63259 63551;63552;63553;63554 63552 4 GTHFNFAIVFTDVK LTSLVKEVYPEARKKGTHFNFAIVFTDVKR KGTHFNFAIVFTDVKRPGYRVKEIGSTMSG K G T V K R 1 0 1 1 0 0 0 1 1 1 0 1 0 3 0 0 2 0 0 2 0 0 14 0 1594.8144 O00422;H7BZW6;U3KPY7 O00422 84 97 SAP18 Histone deacetylase complex subunit SAP18 yes no 2;3 0.00019568 79.82 By MS/MS 2 1.1385 1.285 8.529 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1385 1.285 8.529 2 1 Median NaN NaN NaN 0 0 Median 10608000 5079300 5528800 0 0 0 0 0 0 0 0 0 0 0 0 10608000 5079300 5528800 0 0 0 12479 1253 12983 63260;63261 63555;63556 63556 2 GTHQHQVELIER KAHLDEARTLLHGTRGTHQHQVELIERDEV GTRGTHQHQVELIERDEVSLHKKLRTEVIQ R G T E R D 0 1 0 0 0 2 2 1 2 1 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1445.7375 Q5VTR2 Q5VTR2 414 425 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 0.00036758 53.967 By MS/MS By matching By MS/MS 3 1 1 1.0763 0.90902 21.044 5 Median NaN NaN NaN 0 0 Median 1.0763 0.90902 22.503 3 1 Median 1.1738 1.257 NaN 1 0 Median 1.017 0.86618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8558400 3954500 4603900 0 0 0 6078800 2785400 3293400 626760 230880 395880 1852900 938190 914670 0 0 0 0 0 0 12480 3112 12984 63262;63263;63264;63265;63266 63557;63558;63559 63559 3 GTHQHQVELIERDEVSLHKK KAHLDEARTLLHGTRGTHQHQVELIERDEV QVELIERDEVSLHKKLRTEVIQLEDTLAQV R G T K K L 0 1 0 1 0 2 3 1 3 1 2 2 0 0 0 1 1 0 0 2 0 0 20 2 2382.2404 Q5VTR2 Q5VTR2 414 433 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 5 0.025439 14.77 By MS/MS By matching 1 1 0.89222 1.0168 11.641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96886 1.104 NaN 1 0 Median 0.82165 0.93642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6750400 2700500 4049900 0 0 0 0 0 0 5698800 2253500 3445300 1051600 446980 604640 0 0 0 0 0 0 12481 3112 12985 63267;63268 63560;63561 63561 2 GTHTGVWVGVSGSETSEALSR YEAIVDGGINPDSLRGTHTGVWVGVSGSET WVGVSGSETSEALSRDPETLVGYSMVGCQR R G T S R D 1 1 0 0 0 0 2 4 1 0 1 0 0 0 0 4 3 1 0 3 0 0 21 0 2116.0185 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 102 122 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 1.0393E-93 250.89 By MS/MS By MS/MS By MS/MS 5 5 1 1.3534 1.2112 41.887 11 Median 1.0471 0.98204 16.971 5 0 Median 1.4499 1.2289 7.0579 5 0 Median 3.6364 3.9635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239730000 103990000 135730000 150890000 72627000 78261000 69134000 26939000 42195000 19703000 4425200 15278000 0 0 0 0 0 0 0 0 0 12482 2377 12986 63269;63270;63271;63272;63273;63274;63275;63276;63277;63278;63279 63562;63563;63564;63565;63566;63567;63568;63569;63570;63571;63572;63573;63574;63575;63576;63577;63578;63579 63568 18 GTIEILSDVQLIK TSFFQALGITTKISRGTIEILSDVQLIKTG SRGTIEILSDVQLIKTGDKVGASEATLLNM R G T I K T 0 0 0 1 0 1 1 1 0 3 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1427.8235 P05388;F8VU65;F8VPE8;F8VW21;Q8NHW5 P05388 150 162 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.8383E-80 204.64 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 5 1 1 1 4 1.1793 1.11 18.001 12 Median 1.1722 1.1334 NaN 1 1 Median 1.1552 0.96445 17.002 4 0 Median 1.1864 1.153 NaN 1 0 Median 1.5028 1.2533 NaN 1 0 Median 1.327 1.3116 NaN 1 0 Median 1.1539 0.95047 20.545 4 0 Median 411250000 191890000 219360000 3707300 1613700 2093600 360370000 171630000 188740000 1338400 591240 747110 98233 41158 57075 1730400 743460 986970 44004000 17267000 26737000 12483 1865 12987 63280;63281;63282;63283;63284;63285;63286;63287;63288;63289;63290;63291;63292 63580;63581;63582;63583;63584;63585;63586;63587;63588;63589;63590 63587 11 GTIEINPR SLLSHGGRVIVVGSRGTIEINPRDTMAKES VIVVGSRGTIEINPRDTMAKESSIIGVTLF R G T P R D 0 1 1 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 0 8 0 898.48723 Q08257 Q08257 250 257 CRYZ Quinone oxidoreductase yes yes 2 0.044461 54.157 By MS/MS 1 1.2718 1.2126 NaN 1 Median 1.2718 1.2126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3966500 1471100 2495400 3966500 1471100 2495400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12484 2737 12988 63293 63591 63591 1 GTILISSEEGETEANNHK KFAMVAPDVQIEDGKGTILISSEEGETEAN LISSEEGETEANNHKKLSEFGIRNGSRLQA K G T H K K 1 0 2 0 0 0 4 2 1 2 1 1 0 0 0 2 2 0 0 0 0 0 18 0 1927.9123 Q9UBT2;K7ESK7;U3KQ93 Q9UBT2 487 504 UBA2 SUMO-activating enzyme subunit 2 yes no 3 0.0005499 34.274 By matching By MS/MS 1 1 0.96588 0.88956 3.0148 2 Median 0.93778 0.90872 NaN 1 0 Median 0.99482 0.87079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7202300 3699400 3502900 3105500 1351100 1754400 4096800 2348300 1748500 0 0 0 0 0 0 0 0 0 0 0 0 12485 4247 12989 63294;63295 63592;63593 63593 2 GTILISSEEGETEANNHKK KFAMVAPDVQIEDGKGTILISSEEGETEAN ISSEEGETEANNHKKLSEFGIRNGSRLQAD K G T K K L 1 0 2 0 0 0 4 2 1 2 1 2 0 0 0 2 2 0 0 0 0 0 19 1 2056.0073 Q9UBT2;K7ESK7;U3KQ93 Q9UBT2 487 505 UBA2 SUMO-activating enzyme subunit 2 yes no 3;4 5.105E-10 87.16 By MS/MS By MS/MS 2 2 1.0783 1.0793 12.112 4 Median 1.0208 1.0553 15.833 2 0 Median 1.1219 1.0856 13.468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13180000 6235600 6944400 4966500 2518900 2447700 8213400 3716700 4496700 0 0 0 0 0 0 0 0 0 0 0 0 12486 4247 12990 63296;63297;63298;63299 63594;63595;63596;63597;63598;63599 63598 6 GTILVGGGALATVLGLSQFAHYR ______________________________ ALATVLGLSQFAHYRRKQMNLAYVKAADCI K G T Y R R 3 1 0 0 0 1 0 5 1 1 4 0 0 1 0 1 2 0 1 2 0 0 23 0 2300.2641 P43304;F5GYK7;E9PDK4;E7EM56 P43304 9 31 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial;Glycerol-3-phosphate dehydrogenase yes no 3 1.4776E-05 52.169 By MS/MS 1 1.3344 1.1543 NaN 1 Median NaN NaN NaN 0 0 Median 1.3344 1.1543 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5714900 2635200 3079700 0 0 0 5714900 2635200 3079700 0 0 0 0 0 0 0 0 0 0 0 0 12487 2325 12991 63300 63600 63600 1 GTIPDMIADSGK KEFVAKEGQGNLPVRGTIPDMIADSGKYIK PVRGTIPDMIADSGKYIKLQNVYREKAKKD R G T G K Y 1 0 0 2 0 0 0 2 0 2 0 1 1 0 1 1 1 0 0 0 0 0 12 0 1203.5805 Q13564 Q13564 327 338 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes yes 2 0.002244 49.189 By MS/MS By matching By matching 1 1 1 0.84632 0.79723 14.481 3 Median 0.84632 0.79723 NaN 1 0 Median 0.9352 0.81672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62438 0.62847 NaN 1 0 Median NaN NaN NaN 0 0 Median 12669000 7550700 5118000 10260000 6217600 4042400 709740 352970 356770 0 0 0 0 0 0 1699000 980070 718890 0 0 0 12488 2825 12992 63301;63302;63303 63601 63601 1 GTIQVITQGTSLK EALGTLMRAWAGSPKGTIQVITQGTSLKNA PKGTIQVITQGTSLKNAGNCLSPAVIVGLL K G T L K N 0 0 0 0 0 2 0 2 0 2 1 1 0 0 0 1 3 0 0 1 0 0 13 0 1344.7613 A0A286YF22;O43175;A0A2C9F2M7 A0A286YF22 352 364 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 5.248E-07 164.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.3662 1.1953 12.727 6 Median 1.1706 1.07 NaN 1 0 Median 1.4297 1.2074 NaN 1 0 Median 1.3056 1.2673 NaN 1 0 Median 1.6829 1.444 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3115 1.0913 11.449 2 0 Median 175870000 78455000 97411000 108370000 47056000 61312000 42423000 20253000 22170000 14095000 7106800 6988400 4053700 1526600 2527100 0 0 0 6925500 2512000 4413400 12489 351 12993 63304;63305;63306;63307;63308;63309 63602;63603;63604;63605;63606;63607 63603 6 GTITDAPGFDPLRDAEVLR GTVTPAVPPTQFGSRGTITDAPGFDPLRDA DAPGFDPLRDAEVLRKAMKGFGTDEQAIID R G T L R K 2 2 0 3 0 0 1 2 0 1 2 0 0 1 2 0 2 0 0 1 0 0 19 1 2042.0433 P50995 P50995 192 210 ANXA11 Annexin A11 yes yes 3 0.024216 15.592 By MS/MS By matching 1 1 0.63007 0.65803 9.4346 2 Median 0.69656 0.70342 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56993 0.61556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11223000 7811700 3410900 4681400 2756900 1924400 0 0 0 6541200 5054800 1486500 0 0 0 0 0 0 0 0 0 12490 2425 12994 63310;63311 63608;63609 63608 2 GTITIQDTGIGMTQEELVSNLGTIAR ALPEMEIHLQTNAEKGTITIQDTGIGMTQE MTQEELVSNLGTIARSGSKAFLDALQNQAE K G T A R S 1 1 1 1 0 2 2 4 0 4 2 0 1 0 0 1 5 0 0 1 0 0 26 0 2717.3906 Q12931 Q12931 152 177 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 3 0.065594 6.0301 By MS/MS By matching 1 1 1.2656 1.1835 8.7397 2 Median 1.0999 1.1126 NaN 1 0 Median 1.4562 1.259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3839700 1645500 2194200 1981600 942860 1038800 1858000 702670 1155400 0 0 0 0 0 0 0 0 0 0 0 0 12491 2771 12995 63312;63313 63610 63610 1 GTITVSAQELK LTLPLMLKPGKPAGRGTITVSAQELKDNRV PAGRGTITVSAQELKDNRVVTMEVEARNLD R G T L K D 1 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1145.6292 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX56;Q5JX55;Q5JX54 Q99829 125 135 CPNE1 Copine-1 yes no 2 0.00016774 109.66 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1.1414 1.0808 20.828 6 Median 1.1414 1.0808 1.223 2 0 Median 1.3695 1.1428 NaN 1 0 Median 1.0324 1.1178 26.173 2 0 Median NaN NaN NaN 0 0 Median 0.70648 0.72899 NaN 1 0 Median NaN NaN NaN 0 0 Median 61180000 27879000 33300000 28553000 13098000 15455000 22954000 9987600 12966000 7351300 3655300 3696000 0 0 0 2321700 1138200 1183500 0 0 0 12492 559 12996 63314;63315;63316;63317;63318;63319 63611;63612;63613;63614 63613 4 GTITVSAQELKDNR LTLPLMLKPGKPAGRGTITVSAQELKDNRV RGTITVSAQELKDNRVVTMEVEARNLDKKD R G T N R V 1 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 14 1 1530.8002 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX56;Q5JX55 Q99829 125 138 CPNE1 Copine-1 yes no 2;3 1.5534E-23 203.83 By MS/MS 2 1.2752 1.2765 7.2024 2 Median 1.2752 1.2765 7.2024 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65888000 29360000 36528000 65888000 29360000 36528000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12493 559 12997 63320;63321 63615;63616;63617;63618 63616 4 GTIVLASPGWTTHSISDGKDLEK QVAKVVESKNVALPKGTIVLASPGWTTHSI GWTTHSISDGKDLEKLLTEWPDTIPLSLAL K G T E K L 1 0 0 2 0 0 1 3 1 2 2 2 0 0 1 3 3 1 0 1 0 0 23 1 2411.2333 Q14914;F2Z3J9;Q5JVP2 Q14914 82 104 PTGR1 Prostaglandin reductase 1 yes no 3 8.871E-06 38.26 By MS/MS By matching 2 1 0.71303 0.69426 20.737 3 Median 0.64181 0.66753 5.5525 2 0 Median 1.0539 0.94981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11455000 7172000 4283300 10579000 6639300 3939400 876580 532710 343870 0 0 0 0 0 0 0 0 0 0 0 0 12494 995 12998 63322;63323;63324 63619;63620 63620 2 GTKQEEFESIEEALPDTDVLYMTR SLRMPPTVRAFVASRGTKQEEFESIEEALP IEEALPDTDVLYMTRIQKERFGSTQEYEAC R G T T R I 1 1 0 2 0 1 5 1 0 1 2 1 1 1 1 1 3 0 1 1 0 0 24 1 2800.3113 F8VPD4;P27708 F8VPD4 2060 2083 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.073611 6.5761 By MS/MS By matching 1 1 0.82905 0.8196 3.3871 2 Median 0.82787 0.83946 NaN 1 0 Median 0.83023 0.8002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4142800 1933500 2209300 3406900 1579000 1827800 735870 354460 381410 0 0 0 0 0 0 0 0 0 0 0 0 12495 1057 12999 63325;63326 63621 63621 1 GTLDPVEK ITRARFEELNADLFRGTLDPVEKALRDAKL LNADLFRGTLDPVEKALRDAKLDKSQIHDI R G T E K A 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 857.44945 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2 P11142 312 319 HSPA8 Heat shock cognate 71 kDa protein yes no 1;2 0.0008158 109.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 2 3 0.94163 0.85114 13.033 11 Median 0.95511 0.86906 11.261 2 0 Median 1.1244 0.81429 11.292 4 1 Linear 0.85004 0.83912 NaN 1 0 Median 1.0127 0.86162 NaN 1 0 Median 0.94163 0.89786 NaN 1 0 Median 1.1083 0.9196 27.789 2 0 Median 270160000 139670000 130490000 69755000 36454000 33301000 143060000 73148000 69914000 43144000 23042000 20102000 3912500 1881700 2030700 3784100 1925700 1858400 6498200 3217300 3280900 12496 1950 13000 63327;63328;63329;63330;63331;63332;63333;63334;63335;63336;63337;63338;63339 63622;63623;63624;63625;63626;63627;63628;63629;63630;63631;63632;63633;63634;63635;63636;63637 63632 16 GTLGGLFSQILQGEDIVR LVNNALLSIFKMDAKGTLGGLFSQILQGED GGLFSQILQGEDIVRERAIKFLSTKLKTLP K G T V R E 0 1 0 1 0 2 1 4 0 2 3 0 0 1 0 1 1 0 0 1 0 0 18 0 1902.0211 G3V1C3;Q9BZZ5 G3V1C3 131 148 API5 Apoptosis inhibitor 5 yes no 2 6.7263E-11 99.671 By MS/MS By MS/MS By MS/MS 1 1 3 1.1415 1.1221 15.304 5 Median 1.128 1.1221 NaN 1 0 Median 1.2178 1.0296 NaN 1 0 Median 1.1415 1.1456 18.426 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35692000 16287000 19405000 2932400 1253200 1679200 6142500 2745000 3397500 26617000 12288000 14328000 0 0 0 0 0 0 0 0 0 12497 1103 13001 63340;63341;63342;63343;63344 63638;63639;63640;63641;63642;63643;63644 63641 7 GTLLGESLK EVIKPYDWTYTTDYKGTLLGESLKLKVVPT YTTDYKGTLLGESLKLKVVPTTDHIDTEKL K G T L K L 0 0 0 0 0 0 1 2 0 0 3 1 0 0 0 1 1 0 0 0 0 0 9 0 916.52295 O75663 O75663 118 126 TIPRL TIP41-like protein yes yes 2 0.034559 55.112 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12498 1689 13002 63345 63645 63645 1 GTLNSNAAYEQSHFFNK KRTEMEYYTHEKQEKGTLNSNAAYEQSHFF LNSNAAYEQSHFFNKNYTEDIFPVTPPELE K G T N K N 2 0 3 0 0 1 1 1 1 0 1 1 0 2 0 2 1 0 1 0 0 0 17 0 1926.886 Q5T3J3 Q5T3J3 706 722 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 yes yes 3 5.9254E-06 61.692 By MS/MS By MS/MS By matching 1 2 1 1.1179 1.1244 22.247 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90155 0.86622 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1179 1.1244 6.3813 2 0 Median 1.7788 1.4824 NaN 1 0 Median 29775000 14428000 15347000 0 0 0 0 0 0 7183900 4232000 2952000 0 0 0 22205000 10035000 12171000 385420 161100 224310 12499 3085 13003 63346;63347;63348;63349 63646;63647 63647 2 GTLPAVEPFQR THPSESKINLRIQTRGTLPAVEPFQRGLNE IQTRGTLPAVEPFQRGLNELMNVCQHVLDK R G T Q R G 1 1 0 0 0 1 1 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1213.6455 P0DPB6;A0A0R4J2F3 P0DPB6 88 98 yes no 2 0.0059281 65.305 By MS/MS 1 2.4011 2.4235 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4011 2.4235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48340000 15223000 33117000 0 0 0 0 0 0 48340000 15223000 33117000 0 0 0 0 0 0 0 0 0 12500 1932 13004 63350 63648;63649 63649 2 GTLSGAPAPPTR DPPTRLSLSRSDERRGTLSGAPAPPTRHDF ERRGTLSGAPAPPTRHDFSFDRVFPPGSGQ R G T T R H 2 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 2 0 0 0 0 0 12 0 1123.5986 Q9BW19 Q9BW19 358 369 KIFC1 Kinesin-like protein KIFC1 yes yes 2 0.0039313 44.863 By MS/MS 1 0.7056 0.72171 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7056 0.72171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7667700 4390700 3277000 0 0 0 0 0 0 7667700 4390700 3277000 0 0 0 0 0 0 0 0 0 12501 3860 13005 63351 63650 63650 1 GTLSGWILSK PVPTGEVYFADSFDRGTLSGWILSKAKKDD DSFDRGTLSGWILSKAKKDDTDDEIAKYDG R G T S K A 0 0 0 0 0 0 0 2 0 1 2 1 0 0 0 2 1 1 0 0 0 0 10 0 1060.5917 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7;D6RAQ8 P27824 78 87 CANX Calnexin yes no 2 0.0085275 46.39 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 4 1 1 2 2 1.4582 1.2774 27.226 15 Median 1.2747 1.1784 3.7325 5 0 Median 1.4526 1.2629 6.4563 4 0 Median 1.5334 1.5709 NaN 1 0 Median 1.5461 1.354 NaN 1 0 Median 2.3586 2.3462 11.935 2 0 Median 2.3466 2.0194 4.5058 2 0 Median 162870000 68555000 94316000 94366000 40348000 54017000 56426000 23504000 32922000 8794000 3672600 5121400 441090 185540 255550 2171100 648260 1522900 672800 196510 476290 12502 2158 13006 63352;63353;63354;63355;63356;63357;63358;63359;63360;63361;63362;63363;63364;63365;63366 63651;63652;63653;63654;63655;63656;63657;63658;63659;63660 63651 10 GTLTLCPYHSDR LFMVRLAQGLTHLGKGTLTLCPYHSDRQLM LGKGTLTLCPYHSDRQLMSQVAVAGLLTVL K G T D R Q 0 1 0 1 1 0 0 1 1 0 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1418.6612 Q13200 Q13200 774 785 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 0.027191 33.589 By MS/MS 1 1.3574 1.1807 NaN 1 Median NaN NaN NaN 0 0 Median 1.3574 1.1807 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2002100 924800 1077300 0 0 0 2002100 924800 1077300 0 0 0 0 0 0 0 0 0 0 0 0 12503 2796 13007 63367 63661 63661 1 GTLVEEINCK QIEHLKSLLDDWASKGTLVEEINCKGTSLE DWASKGTLVEEINCKGTSLENLIMEITAPD K G T C K G 0 0 1 0 1 0 2 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1161.57 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4375 4384 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0019657 78.113 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12504 1220 13008 63368 63662 63662 1 GTLVGDILR GKSTAFQLVELGPGRGTLVGDILRVFTQLG ELGPGRGTLVGDILRVFTQLGSVLKNCDIS R G T L R V 0 1 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 942.54983 C9JS27;Q7L592;C9J236;C9JP36;C9JEL7 C9JS27 86 94 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 2 0.002528 71.379 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0836 1.1092 18.681 4 Median 0.92875 0.93891 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87344 0.94661 NaN 1 0 Median 1.5355 1.306 NaN 1 0 Median 1.2642 1.2997 NaN 1 0 Median NaN NaN NaN 0 0 Median 8059000 4328600 3730400 1790300 897870 892470 0 0 0 5515500 3111300 2404200 385020 137310 247720 368090 182090 186000 0 0 0 12505 721 13009 63369;63370;63371;63372 63663;63664;63665 63665 3 GTLVQTKGTGASGSFK NNSRIKLGLKSLVSKGTLVQTKGTGASGSF TLVQTKGTGASGSFKLNKKAASGEGKPKAK K G T F K L 1 0 0 0 0 1 0 4 0 0 1 2 0 1 0 2 3 0 0 1 0 0 16 1 1537.81 P10412;Q02539;P16401;P16402;P16403 P16402 92 107 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 2.3822E-07 134.99 By matching By MS/MS By MS/MS 2 5 3 1.0752 1.0233 22.34 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5914 1.3657 36.02 2 0 Median 0.85646 0.90857 8.7567 5 0 Median 1.3569 1.1514 10.337 3 0 Median 73410000 36215000 37194000 0 0 0 0 0 0 0 0 0 1944400 669700 1274700 59098000 30348000 28749000 12367000 5197300 7170100 12506 2028;1937;2029 13010 63373;63374;63375;63376;63377;63378;63379;63380;63381;63382 63666;63667;63668;63669;63670;63671;63672;63673;63674;63675;63676 63667 11 GTMDDISQEEGSSQGEDSVSGSQR LQACKMQDIKLPLSKGTMDDISQEEGSSQG EGSSQGEDSVSGSQRISSIYAREALIEIDY K G T Q R I 0 1 0 3 0 3 3 4 0 1 0 0 1 0 0 6 1 0 0 1 0 0 24 0 2485.0147 Q14683;G8JLG1;V9GY57 Q14683 945 968 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 7.1867E-24 101.6 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 0.97071 0.92444 11.893 9 Median 0.97071 0.94022 NaN 1 0 Median 1.2863 1.1384 NaN 1 0 Median 0.74385 0.81789 14.541 2 0 Median 1.1586 1.0184 3.9771 2 0 Median 0.88852 0.91704 1.1365 2 0 Median 1.1178 0.91279 NaN 1 0 Median 59615000 30355000 29260000 3875900 1714600 2161300 726350 276070 450280 26421000 14261000 12160000 4997200 2264000 2733200 22710000 11450000 11259000 884740 389300 495430 12507 2889 13011 63383;63384;63385;63386;63387;63388;63389;63390;63391 63677;63678;63679;63680;63681;63682;63683 63678 7 GTMDPALR ______________________________ TIIEALRGTMDPALREAAERQLNEAHKSLN R G T L R E 1 1 0 1 0 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 8 0 859.42219 O95373;E9PLJ0 O95373 12 19 IPO7 Importin-7 yes no 2 0.049966 57.281 By MS/MS 2 2.0788 1.7248 NaN 1 Median NaN NaN NaN 0 0 Median 2.0788 1.7248 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23404000 6129800 17274000 0 0 0 23404000 6129800 17274000 0 0 0 0 0 0 0 0 0 0 0 0 12508 1768 13012 63392;63393 63684;63685 63685 2 GTMIPSEAPLLHR LNTHYRYIGKTMDYRGTMIPSEAPLLHRQV YRGTMIPSEAPLLHRQVKLVDPMDRKPTEI R G T H R Q 1 1 0 0 0 0 1 1 1 1 2 0 1 0 2 1 1 0 0 0 0 0 13 0 1420.7497 Q96A35;X6RJ73 Q96A35 106 118 MRPL24 39S ribosomal protein L24, mitochondrial yes no 2;3 0.00052789 71.349 By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 0.9025 0.84698 11.835 8 Median 0.9025 0.85386 3.0201 2 0 Median 1.004 0.85479 8.3243 2 0 Median 0.7424 0.71194 0.37975 2 0 Median 1.2247 1.0108 NaN 1 0 Median 0.86682 0.85829 NaN 1 0 Median NaN NaN NaN 0 0 Median 33053000 18115000 14938000 14868000 7902300 6965300 2368000 1258100 1109900 11268000 6500900 4767000 900440 306360 594080 3649100 2147500 1501600 0 0 0 12509 3593 13013;13014 63394;63395;63396;63397;63398;63399;63400;63401 63686;63687;63688;63689 63689 1787 3 GTMTEIYNDLSK ADIAKYTSKMMDAIKGTMTEIYNDLSKNTT AIKGTMTEIYNDLSKNTTGSTIAEIRRLRI K G T S K N 0 0 1 1 0 0 1 1 0 1 1 1 1 0 0 1 2 0 1 0 0 0 12 0 1370.6388 Q9ULU4 Q9ULU4 939 950 ZMYND8 Protein kinase C-binding protein 1 no no 2 0.00089741 59.542 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.24 1.2722 19.713 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0395 1.0953 15.918 2 0 Median 1.5031 1.3234 23.846 2 0 Median 1.3391 1.3984 13.373 2 1 Median 1.9912 1.6751 NaN 1 0 Median 16815000 7431100 9383800 0 0 0 0 0 0 10989000 4879700 6109300 673300 293000 380300 4875100 2148300 2726800 277480 110170 167310 12510 4328 13015 63402;63403;63404;63405;63406;63407;63408 63690;63691 63690 2 GTMTTGHNVADLVVILK EVQIEEVRQVGSYKKGTMTTGHNVADLVVI MTTGHNVADLVVILKILPTLEAVAALGNKV K G T L K I 1 0 1 1 0 0 0 2 1 1 2 1 1 0 0 0 3 0 0 3 0 0 17 0 1767.9553 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 73 89 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 2.1783E-07 94.191 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 10 4 6 3 1.0816 1.0447 23.707 26 Median 1.2104 1.13 NaN 1 0 Median 1.3064 1.1338 5.9228 2 0 Median 1.0459 1.0557 35.307 10 0 Median 1.1233 0.96033 12.028 4 0 Median 1.0135 1.0612 17.181 6 0 Median 1.2639 0.98373 3.1284 3 0 Plateau 585560000 279140000 306430000 5135800 2270800 2865000 11716000 5153700 6562300 468720000 225690000 243020000 16500000 7311600 9188600 68076000 32295000 35781000 15421000 6410700 9010500 12511 609 13016;13017 63409;63410;63411;63412;63413;63414;63415;63416;63417;63418;63419;63420;63421;63422;63423;63424;63425;63426;63427;63428;63429;63430;63431;63432;63433;63434 63692;63693;63694;63695;63696;63697;63698;63699;63700;63701;63702;63703;63704;63705;63706;63707;63708;63709;63710;63711 63694 236 20 GTMVTIEGPR LIETAKKLGLRCHSKGTMVTIEGPRFSSRA RCHSKGTMVTIEGPRFSSRAESFMFRTWGA K G T P R F 0 1 0 0 0 0 1 2 0 1 0 0 1 0 1 0 2 0 0 1 0 0 10 0 1059.5383 B4DUC8;Q13126;J3QSB7 B4DUC8 184 193 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 2 0.00041856 110.41 By MS/MS By MS/MS 2 2 1.0019 0.91002 6.0588 3 Median 0.97228 0.91002 NaN 1 1 Median 1.0512 0.88359 8.2235 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25955000 13258000 12697000 17612000 9236200 8375400 8343100 4021600 4321500 0 0 0 0 0 0 0 0 0 0 0 0 12512 604 13018 63435;63436;63437;63438 63712;63713;63714;63715;63716 63715 5 GTNESLER RRQVQSLTCEVDALKGTNESLERQMREMEE CEVDALKGTNESLERQMREMEENFAVEAAN K G T E R Q 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 8 0 904.42502 P08670;B0YJC4;B0YJC5 P08670 335 342 VIM Vimentin no no 2 0.0069279 69.198 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 2 1 1 1 0.88076 0.86261 20.752 7 Median 0.88076 0.86261 NaN 1 0 Median 1.318 1.1483 NaN 1 0 Median 1.007 0.98792 13.205 2 0 Median 0.85772 0.75781 NaN 1 0 Median 0.69171 0.69538 NaN 1 0 Median 0.80925 0.67629 NaN 1 0 Median 6072600 3358300 2714300 809640 445910 363720 1155500 524640 630850 414380 193930 220450 99444 52108 47337 3533900 2113200 1420700 59693 28446 31247 12513 1907 13019 63439;63440;63441;63442;63443;63444;63445 63717;63718;63719;63720;63721;63722 63721 6 GTNTSSPYDAGADYLR IGSPPVTSSQVMLSKGTNTSSPYDAGADYL TNTSSPYDAGADYLRACPKCNVQFNLLDPL K G T L R A 2 1 1 2 0 0 0 2 0 0 1 0 0 0 1 2 2 0 2 0 0 0 16 0 1686.7485 Q9UJJ2;Q8ND82 Q9UJJ2 222 237 ZNF280C Zinc finger protein 280C yes no 2 3.6779E-05 81.494 By MS/MS 1 0.74971 0.7813 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74971 0.7813 NaN 1 0 Median NaN NaN NaN 0 0 Median 5372000 3146800 2225200 0 0 0 0 0 0 0 0 0 0 0 0 5372000 3146800 2225200 0 0 0 12514 3423 13020 63446 63723 63723 1 GTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLK PMKKENQWFDVGVIKGTNVMVTHYFLPPDD SDDDLGTVPDYNQLKKQELQPGTAYKFRVA K G T L K K 1 0 2 6 0 1 0 2 1 0 3 1 1 1 4 1 3 0 2 4 0 0 33 0 3632.6981 A6NEM2;P51610;H7C1C4 A6NEM2 1865 1897 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 0.016216 20.038 By MS/MS 2 0.4144 0.43919 21.373 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4144 0.43919 21.373 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3482400 2676700 805760 0 0 0 0 0 0 3482400 2676700 805760 0 0 0 0 0 0 0 0 0 12515 509;2438 13021 63447;63448 63724;63725 63725 2 GTPFETPDQGK VIHNLATYVFLHTVKGTPFETPDQGKARLL HTVKGTPFETPDQGKARLLTHWEQMDYGLQ K G T G K A 0 0 0 1 0 1 1 2 0 0 0 1 0 1 2 0 2 0 0 0 0 0 11 0 1175.5459 Q53FV1;F8VXD5;F6WST4;A0A1B0GXE7;Q9P0S3;J3KTF9;J3QRM9;Q8N138 Q53FV1 69 79 ORMDL2;ORMDL1;ORMDL3 ORM1-like protein 2;ORM1-like protein 1;ORM1-like protein 3 no no 2 0.018812 47.198 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.66581 0.5846 9.3106 4 Median 0.73827 0.69846 NaN 1 1 Median 0.68312 0.57321 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64894 0.57856 NaN 1 0 Median 0.55265 0.59071 NaN 1 0 Median NaN NaN NaN 0 0 Median 6476700 3653800 2822900 2599900 1527800 1072100 1535900 812960 722970 0 0 0 1702800 908940 793890 638060 404070 233990 0 0 0 12516 3029;1351 13022 63449;63450;63451;63452 63726;63727 63727 2 GTPGPDSSGSLGSGEFTGVK PPQVLSPDMVPPSERGTPGPDSSGSLGSGE DSSGSLGSGEFTGVKELDDISQEIAQLQRE R G T V K E 0 0 0 1 0 0 1 6 0 0 1 1 0 1 2 4 2 0 0 1 0 0 20 0 1835.8537 M0R165;Q9UBC2;M0R2S2 M0R165 365 384 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 2 2.8599E-08 68.034 By matching By MS/MS 1 1 1.0872 1.0749 16.744 2 Median NaN NaN NaN 0 0 Median 1.0781 0.95492 NaN 1 0 Median 1.0963 1.2101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120800 3350400 2770400 0 0 0 1216500 508830 707710 4904300 2841600 2062700 0 0 0 0 0 0 0 0 0 12517 1431 13023 63453;63454 63728 63728 1 GTPGPPPAHGAALQPHPR QPEPARAPQGRAIPRGTPGPPPAHGAALQP GPPPAHGAALQPHPRVNFCPLPSEQCYQAP R G T P R V 3 1 0 0 0 1 0 3 2 0 1 0 0 0 6 0 1 0 0 0 0 0 18 0 1756.9121 Q15654 Q15654 26 43 TRIP6 Thyroid receptor-interacting protein 6 yes yes 3 7.0686E-05 42.338 By MS/MS By MS/MS 1 1 0.64791 0.59743 40.634 2 Median NaN NaN NaN 0 0 Median 0.51933 0.44824 NaN 1 0 Median 0.80834 0.79629 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3026400 2003100 1023300 0 0 0 2059900 1296800 763160 966460 706350 260110 0 0 0 0 0 0 0 0 0 12518 2962 13024 63455;63456 63729;63730 63730 2 GTPLDTEVPMER MTSQPSMGALVACTRGTPLDTEVPMERVFD CTRGTPLDTEVPMERVFDYSEYWEGARGLY R G T E R V 0 1 0 1 0 0 2 1 0 0 1 0 1 0 2 0 2 0 0 1 0 0 12 0 1343.6391 P11498 P11498 819 830 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.00014004 88.681 By MS/MS By MS/MS 1 1 0.88256 0.79827 5.8807 2 Median 0.86363 0.83217 NaN 1 0 Median 0.9019 0.76576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14625000 7977200 6647600 10807000 5969000 4837800 3817900 2008200 1809800 0 0 0 0 0 0 0 0 0 0 0 0 12519 1967 13025 63457;63458 63731;63732;63733 63731 3 GTPLISPLIK NPNALFPPVEFPAPRGTPLISPLIKWDHSL FPAPRGTPLISPLIKWDHSLAWDVPAAEDF R G T I K W 0 0 0 0 0 0 0 1 0 2 2 1 0 0 2 1 1 0 0 0 0 0 10 0 1037.6485 P49327;A0A0U1RQF0 P49327 826 835 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00041199 76.221 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 2 1 2 1 0.87281 0.88063 26.622 13 Median 0.79281 0.75667 2.8752 3 0 Plateau 1.1187 0.98693 13.344 4 0 Median 0.72225 0.80125 13.359 2 0 Median 1.0583 0.95273 NaN 1 0 Median 1.3176 1.3829 46.549 2 0 Median 0.87281 0.7308 NaN 1 0 Median 151360000 78295000 73069000 89006000 49322000 39684000 54637000 25041000 29596000 4730500 2700900 2029600 176310 81556 94757 2486700 985360 1501400 327740 165190 162550 12520 2377 13026 63459;63460;63461;63462;63463;63464;63465;63466;63467;63468;63469;63470;63471 63734;63735;63736;63737;63738;63739;63740;63741;63742;63743;63744;63745;63746;63747 63737 14 GTPQQIDYAR PPPNADPNMKLFTIRGTPQQIDYARQLIEE LFTIRGTPQQIDYARQLIEEKIGGPVNPLG R G T A R Q 1 1 0 1 0 2 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1147.5622 Q96AE4;E9PEB5 Q96AE4 431 440 FUBP1 Far upstream element-binding protein 1 yes no 2 0.00039551 88.948 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 3 1.1758 1.0338 17.122 7 Median NaN NaN NaN 0 0 Median 1.2445 1.0783 NaN 1 0 Median 1.0303 1.0338 NaN 1 0 Median 1.4558 1.2352 27.986 2 0 Median 0.8613 0.91198 NaN 1 0 Median 1.1603 0.97038 10.837 2 1 Median 83415000 39813000 43603000 0 0 0 4024100 1298400 2725700 52528000 25796000 26732000 17649000 7813300 9835800 2822100 1822000 1000100 6392100 3082900 3309200 12521 3599 13027 63472;63473;63474;63475;63476;63477;63478;63479;63480 63748;63749;63750;63751;63752;63753;63754;63755;63756;63757;63758;63759;63760;63761 63752 14 GTPSQSPVVGR KSLLGDSAPTLHLNKGTPSQSPVVGRSQGQ HLNKGTPSQSPVVGRSQGQQQEKKQFDLLS K G T G R S 0 1 0 0 0 1 0 2 0 0 0 0 0 0 2 2 1 0 0 2 0 0 11 0 1083.5673 C9J2I0;B8ZZY2;P52594 C9J2I0 98 108 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 2 0.039759 28.013 By MS/MS 1 0.8386 0.74051 NaN 1 Median NaN NaN NaN 0 0 Median 0.8386 0.74051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 537680 270920 266760 0 0 0 537680 270920 266760 0 0 0 0 0 0 0 0 0 0 0 0 12522 653 13028 63481 63762 63762 1 GTPWEGGLFK TMNLMNWECAIPGKKGTPWEGGLFKLRMLF IPGKKGTPWEGGLFKLRMLFKDDYPSSPPK K G T F K L 0 0 0 0 0 0 1 3 0 0 1 1 0 1 1 0 1 1 0 0 0 0 10 0 1090.5447 H3BPC4;H3BQQ9;B0QYN7;P63279 H3BPC4 46 55 UBE2I SUMO-conjugating enzyme UBC9 yes no 2 0.0011347 68.224 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 0.97938 0.88222 7.6773 10 Median 0.915 0.84652 5.2975 2 0 Median 1.1864 1.0163 8.849 3 0 Median 0.93318 0.8759 4.2911 3 0 Median 1.098 0.91539 3.9296 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 310040000 154020000 156010000 146050000 70795000 75251000 9285500 4399900 4885700 149480000 76414000 73062000 5230600 2415400 2815200 0 0 0 0 0 0 12523 558 13029 63482;63483;63484;63485;63486;63487;63488;63489;63490;63491 63763;63764;63765;63766;63767;63768;63769;63770;63771;63772;63773;63774;63775;63776;63777 63769 15 GTQGAEEVLR AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ SLVIRGTQGAEEVLRAHEEQLKEAQAVPAT R G T L R A 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q15149;H0YDN1 Q15149 1234 1243 PLEC Plectin yes no 2 0.00035294 124.23 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2321 1.0851 9.5141 4 Median NaN NaN NaN 0 0 Median 1.2186 0.98428 NaN 1 0 Median 1.0276 1.1426 NaN 1 1 Median 1.3937 1.2127 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2458 1.0305 NaN 1 0 Median 24364000 9743000 14621000 0 0 0 12467000 4936700 7530000 2213300 1141800 1071400 969210 371210 598000 0 0 0 8714800 3293200 5421600 12524 2933 13030 63492;63493;63494;63495 63778;63779;63780 63780 3 GTQGATAGASSELDASK YRGRKKGKKKDQIGKGTQGATAGASSELDA QGATAGASSELDASKTVSSPPTSPRPGSAA K G T S K T 4 0 0 1 0 1 1 3 0 0 1 1 0 0 0 3 2 0 0 0 0 0 17 0 1549.722 O76094 O76094 601 617 SRP72 Signal recognition particle subunit SRP72 yes yes 2 8.2695E-11 107.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1.1702 1.1069 16.005 7 Median 1.1702 1.1262 NaN 1 0 Median 1.1019 0.95786 7.6382 2 0 Median 1.1005 1.1652 NaN 1 0 Median 1.2772 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4854 1.2507 27.08 2 0 Median 20273000 9040200 11233000 3462000 1683800 1778200 6487100 2834200 3652900 4759200 2142700 2616500 3986800 1699600 2287200 0 0 0 1577800 679940 897870 12525 1721 13031 63496;63497;63498;63499;63500;63501;63502 63781;63782;63783;63784;63785;63786;63787;63788;63789;63790;63791;63792 63786 12 GTQGVVTNFEIFR KNGDYLCVKVDRTPKGTQGVVTNFEIFRMR PKGTQGVVTNFEIFRMREKQVPVDVVEMKE K G T F R M 0 1 1 0 0 1 1 2 0 1 0 0 0 2 0 0 2 0 0 2 0 0 13 0 1466.7518 P55884 P55884 536 548 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 7.4802E-07 115.18 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 2 1 1 1 1 1.1729 1.0811 17.024 10 Median 1.3642 1.3223 13.673 4 1 Linear 1.0681 0.91192 7.3581 2 0 Median 1.166 1.2426 NaN 1 0 Median 1.1946 1.0254 NaN 1 0 Median 1.4352 1.5218 NaN 1 0 Median 1.1799 1.035 NaN 1 0 Median 66185000 29632000 36552000 46341000 20669000 25671000 10305000 4731600 5573800 6106000 2718700 3387300 597330 274680 322650 2502900 1071200 1431700 332330 166740 165590 12526 2504 13032 63503;63504;63505;63506;63507;63508;63509;63510;63511;63512;63513 63793;63794;63795;63796;63797;63798;63799;63800;63801;63802;63803 63795 11 GTQLLSSGSDGLVK EGHDASVLKVAFVSRGTQLLSSGSDGLVKL RGTQLLSSGSDGLVKLWTIKNNECVRTLDA R G T V K L 0 0 0 1 0 1 0 3 0 0 3 1 0 0 0 3 1 0 0 1 0 0 14 0 1360.7198 Q12788;J3KNP2;A0A087WYP7 Q12788 575 588 TBL3 Transducin beta-like protein 3 yes no 2 1.2903E-05 88.187 By MS/MS By matching By MS/MS 1 1 1 1.4209 1.3485 5.7871 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2098 1.2928 NaN 1 0 Median 1.4705 1.3485 NaN 1 0 Median 1.4209 1.4495 NaN 1 0 Median NaN NaN NaN 0 0 Median 16193000 6901700 9291300 0 0 0 0 0 0 13545000 5861800 7682800 348050 141120 206940 2300300 898730 1401500 0 0 0 12527 2757 13033 63514;63515;63516 63804;63805;63806 63804 3 GTQLSQVEILQR HCYSRLRELVPGVPRGTQLSQVEILQRVID VPRGTQLSQVEILQRVIDYILDLQVVLAEP R G T Q R V 0 1 0 0 0 3 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 12 0 1370.7518 Q02535 Q02535 61 72 ID3 DNA-binding protein inhibitor ID-3 yes yes 2 0.00015936 87.298 By MS/MS 1 0.76434 0.74569 NaN 1 Median 0.76434 0.74569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3326900 2051200 1275700 3326900 2051200 1275700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12528 2699 13034 63517 63807;63808 63808 2 GTQNIPAGKPSLQTSSAR GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ R G T A R M 2 1 1 0 0 2 0 2 0 1 1 1 0 0 2 3 2 0 0 0 0 0 18 1 1811.949 Q86YP4 Q86YP4 196 213 GATAD2A Transcriptional repressor p66-alpha yes yes 3 3.1959E-06 54.805 By MS/MS By matching By matching By MS/MS 1 1 2 2 0.73007 0.73054 12.78 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73613 0.78249 NaN 1 0 Median 0.72273 0.68205 NaN 1 0 Median 0.67906 0.72635 21.006 2 0 Median 0.83169 0.73977 16.659 2 0 Median 27030000 15152000 11877000 0 0 0 0 0 0 15266000 8886700 6379800 940300 562000 378310 6865200 3812500 3052700 3957500 1891200 2066300 12529 3309 13035 63518;63519;63520;63521;63522;63523 63809;63810;63811;63812;63813 63810 5 GTQRPVFLK KVYQRSTAIFFYCDRGTQRPVFLKETSDCS FFYCDRGTQRPVFLKETSDCSYLFEWRTQY R G T L K E 0 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 9 1 1044.608 P11717 P11717 1336 1344 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.046475 48.794 By MS/MS 1 1.3302 1.2341 NaN 1 Median NaN NaN NaN 0 0 Median 1.3302 1.2341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9130200 3535600 5594600 0 0 0 9130200 3535600 5594600 0 0 0 0 0 0 0 0 0 0 0 0 12530 1969 13036 63524 63814 63814 1 GTQTYSVLEGDPSENYSK YDRVVRREICRIITKGTQTYSVLEGDPSEN TYSVLEGDPSENYSKYLLSLKEKEEDSSGH K G T S K Y 0 0 1 1 0 1 2 2 0 0 1 1 0 0 1 3 2 0 2 1 0 0 18 0 1973.8854 P52701;A0A494C0M1;A0A087WWJ1 P52701 520 537 MSH6 DNA mismatch repair protein Msh6 yes no 2 2.5278E-15 164.68 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 1 2 1 1 0.86695 0.78935 18.67 8 Median 0.79633 0.77586 0.056819 2 0 Median 0.7871 0.68491 NaN 1 0 Median 0.70261 0.74789 NaN 1 0 Median 1.0479 0.91776 17.54 2 0 Median 1.1414 1.2009 NaN 1 0 Median 0.93019 0.80275 NaN 1 0 Median 72987000 40366000 32621000 31682000 17884000 13798000 962960 511850 451110 31451000 17778000 13674000 7132400 3309700 3822700 1399300 682020 717300 359030 200640 158390 12531 2453 13037 63525;63526;63527;63528;63529;63530;63531;63532 63815;63816;63817;63818;63819;63820;63821 63815 7 GTRDDEYDYLFK ______________________________ ______________________________ M G T F K V 0 1 0 3 0 0 1 1 0 0 1 1 0 1 0 0 1 0 2 0 0 0 12 1 1520.6783 H3BSC1;P62491;H3BMH2;B4DQU5;Q15907 Q15907 2 13 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.00017265 80.706 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1656 1.1078 28.224 5 Median 1.0376 1.0768 NaN 1 0 Median 1.2311 1.1376 NaN 1 0 Median 1.1656 1.2147 NaN 1 0 Median 1.2515 1.1078 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64781 0.6076 NaN 1 0 Median 98884000 46330000 52554000 79898000 37924000 41974000 10086000 4312300 5774100 8520000 3875100 4644900 142070 63005 79061 0 0 0 237200 155000 82205 12532 1233;2976 13038 63533;63534;63535;63536;63537 63822;63823;63824;63825;63826 63823 5 GTSFDAAATSGGSASSEK CTVKCDEKVKVFSVRGTSFDAAATSGGSAS FDAAATSGGSASSEKASSTSPVEISEWLDQ R G T E K A 4 0 0 1 0 0 1 3 0 0 0 1 0 1 0 5 2 0 0 0 0 0 18 0 1629.7118 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6;H0YKF0 P13804 170 187 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 7.5052E-13 142.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.1381 0.95922 27.882 5 Median 0.94547 0.85723 NaN 1 0 Median 1.4042 1.177 NaN 1 0 Median 0.79612 0.76164 NaN 1 0 Median 1.1381 0.95922 NaN 1 1 Median 1.5609 1.543 NaN 1 0 Median NaN NaN NaN 0 0 Median 75168000 35700000 39468000 40830000 20640000 20190000 25975000 11265000 14710000 3688700 2038200 1650500 2911600 1153200 1758400 1762400 603360 1159000 0 0 0 12533 1996 13039 63538;63539;63540;63541;63542;63543 63827;63828;63829;63830;63831;63832;63833;63834;63835;63836;63837;63838;63839 63834 13 GTSGSLADVFANTR TSSSASSTLSHGEVKGTSGSLADVFANTRI KGTSGSLADVFANTRIENFSAPPDVTTTTS K G T T R I 2 1 1 1 0 0 0 2 0 0 1 0 0 1 0 2 2 0 0 1 0 0 14 0 1394.679 Q9P265 Q9P265 199 212 DIP2B Disco-interacting protein 2 homolog B yes yes 2 0.0010193 51.875 By MS/MS By matching 2 1 0.99237 0.97171 11.881 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88765 0.97171 13.755 2 0 Median 0.9957 0.86339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6937900 3000200 3937600 0 0 0 0 0 0 6756800 2891300 3865500 181060 108900 72157 0 0 0 0 0 0 12534 4215 13040 63544;63545;63546 63840 63840 1 GTSSIAITALMEEK NKILPAAALASEHSKGTSSIAITALMEEKG KGTSSIAITALMEEKGYQVPVLGTPSLLGQ K G T E K G 2 0 0 0 0 0 2 1 0 2 1 1 1 0 0 2 2 0 0 0 0 0 14 0 1449.7385 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 449 462 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 0.0069722 36.303 By MS/MS By matching 1 1 0.92963 0.9343 31.524 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0476 1.1676 NaN 1 0 Median 0.82496 0.74761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3744000 2136800 1607200 0 0 0 0 0 0 3667100 2097700 1569400 76900 39068 37832 0 0 0 0 0 0 12535 3251 13041 63547;63548 63841 63841 1 GTSVDGHSLASSNTDFAFSLYK VHCLPENVTPEEQHKGTSVDGHSLASSNTD SLASSNTDFAFSLYKQLALKDPNKNVIFSP K G T Y K Q 2 0 1 2 0 0 0 2 1 0 2 1 0 2 0 5 2 0 1 1 0 0 22 0 2303.0706 CON__REFSEQ:XP_001252647 CON__REFSEQ:XP_001252647 38 59 yes yes 3 0.011071 23.296 By MS/MS 1 0.23831 0.22956 NaN 1 Median 0.23831 0.22956 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701600 2332100 369480 2701600 2332100 369480 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12536 796 13042 63549 63842 63842 1 GTSYQSPHGIPIDLLDR PVLIMATNRGITRIRGTSYQSPHGIPIDLL SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK R G T D R L 0 1 0 2 0 1 0 2 1 2 2 0 0 0 2 2 1 0 1 0 0 0 17 0 1867.9428 Q9Y230;M0R0Y3 Q9Y230 337 353 RUVBL2 RuvB-like 2 yes no 3 7.4312E-06 56.407 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 2 0.85799 0.82474 6.9015 9 Median 0.79821 0.75447 8.443 2 0 Median 0.85799 0.7275 NaN 1 0 Median 0.80484 0.79825 5.4512 2 1 Median 0.9574 0.82671 0.28745 2 0 Median NaN NaN NaN 0 0 Median 1.0016 0.85191 4.5843 2 0 Median 88282000 48192000 40090000 16298000 8782700 7515600 4976400 2500000 2476300 59176000 32995000 26181000 7282600 3642900 3639700 0 0 0 548970 271240 277730 12537 4368 13043 63550;63551;63552;63553;63554;63555;63556;63557;63558 63843;63844;63845;63846;63847;63848;63849;63850;63851;63852;63853;63854;63855;63856 63850 14 GTTATSAQANSTPTSVASVVTSAESPASR SLLVNIPQPTPASLKGTTATSAQANSTPTS SVASVVTSAESPASRQAAAKLALRKQLEKT K G T S R Q 6 1 1 0 0 1 1 1 0 0 0 0 0 0 2 7 6 0 0 3 0 0 29 0 2735.321 Q86YP4 Q86YP4 316 344 GATAD2A Transcriptional repressor p66-alpha yes yes 3 8.2411E-06 36.533 By MS/MS 1 0.7825 0.82064 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7825 0.82064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5024200 2497100 2527100 0 0 0 0 0 0 5024200 2497100 2527100 0 0 0 0 0 0 0 0 0 12538 3309 13044 63559 63857 63857 1 GTTAVLTEK PNKKGTRLGRYRCEKGTTAVLTEKITPLEI RYRCEKGTTAVLTEKITPLEIEVLEETVQT K G T E K I 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 9 0 918.50221 Q99436 Q99436 250 258 PSMB7 Proteasome subunit beta type-7 yes yes 2 0.0062595 55.112 By MS/MS By MS/MS By matching 1 1 1 1.3113 1.0646 13.57 3 Median 1.0792 1.0044 NaN 1 0 Median 1.5362 1.3009 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3113 1.0646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9679800 4611500 5068300 7152300 3353800 3798500 2327700 1158400 1169400 0 0 0 199800 99325 100470 0 0 0 0 0 0 12539 3744 13045 63560;63561;63562 63858;63859 63858 2 GTTEVNIDSETVHR AVSKMNPGEKEPIHRGTTEVNIDSETVHRM RGTTEVNIDSETVHRMLLSAPSENDRVQKN R G T H R M 0 1 1 1 0 0 2 1 1 1 0 0 0 0 0 1 3 0 0 2 0 0 14 0 1556.7431 Q8NFC6 Q8NFC6 1227 1240 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2;3 6.525E-08 101.95 By MS/MS By MS/MS 3 1 0.96187 1.0093 27.197 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98663 1.043 25.177 3 0 Median 0.93773 0.81648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20649000 10404000 10245000 0 0 0 0 0 0 18484000 9175600 9308100 2165200 1228600 936670 0 0 0 0 0 0 12540 3434 13046 63563;63564;63565;63566 63860;63861;63862;63863;63864;63865 63863 6 GTTGTQASFLQLFEGDDHKVEQLDK NLKRVRDDLRFRGVKGTTGTQASFLQLFEG QLFEGDDHKVEQLDKMVTEKAGFKRAFIIT K G T D K M 1 0 0 3 0 3 2 3 1 0 3 2 0 2 0 1 3 0 0 1 0 0 25 1 2763.3352 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;A0A096LP92;A0A096LPA2 A0A1B0GWJ0 200 224 ADSL Adenylosuccinate lyase yes no 4 0.05091 9.2092 By MS/MS 1 0.98085 0.94326 NaN 1 Median 0.98085 0.94326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3870300 1988200 1882100 3870300 1988200 1882100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12541 200 13047 63567 63866 63866 1 GTTLQSLGLTGGSATIR CVYTRDEVTGEAALRGTTLQSLGLTGGSAT TLQSLGLTGGSATIRFVMKCYDPVGKTPGS R G T I R F 1 1 0 0 0 1 0 4 0 1 3 0 0 0 0 2 4 0 0 0 0 0 17 0 1631.8842 Q9BZE9;J3QL04;J3QR12 Q9BZE9 153 169 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 2 6.7118E-06 83.314 By MS/MS By matching 1 1 1.225 1.2478 17.964 2 Median 1.1287 1.0989 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3295 1.4168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6976700 3176900 3799700 4840700 2222200 2618500 0 0 0 2135900 954680 1181200 0 0 0 0 0 0 0 0 0 12542 3899 13048 63568;63569 63867;63868 63868 2 GTTVSVQQLFSTLPVR HNGKIIQKTPYPRPRGTTVSVQQLFSTLPV TTVSVQQLFSTLPVRHKEFQRNIKKEYAKM R G T V R H 0 1 0 0 0 2 0 1 0 0 2 0 0 1 1 2 3 0 0 3 0 0 16 0 1731.9519 A0A2R8Y6S3;C9J167;P54278 A0A2R8Y6S3 19 34 PMS2 Mismatch repair endonuclease PMS2 yes no 2 0.00034546 48.004 By MS/MS 1 0.82025 0.87811 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82025 0.87811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1252200 718710 533510 0 0 0 0 0 0 1252200 718710 533510 0 0 0 0 0 0 0 0 0 12543 376 13049 63570 63869 63869 1 GTVAYVGATLFATGK LRVGSRVEVIGKGHRGTVAYVGATLFATGK GTVAYVGATLFATGKWVGVILDEAKGKNDG R G T G K W 3 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 3 0 1 2 0 0 15 0 1454.7769 E7EX90;Q14203;Q6AWB1;C9J1B7;C9JZA4;C9JTE5;C9JJN7;C9JJD0;C9JKG6;E9PCY0 E7EX90 25 39 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 6.9056E-07 96.64 By MS/MS By matching 1 2 0.96242 0.92482 32.711 3 Plateau 0.96242 0.92482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79257 0.69365 39.855 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6002700 3402800 2599900 5745100 3284500 2460500 0 0 0 0 0 0 257630 118310 139310 0 0 0 0 0 0 12544 906 13050 63571;63572;63573 63870 63870 1 GTVEEEIIER IGQKKQVNIYRLVTKGTVEEEIIERAKKKM RLVTKGTVEEEIIERAKKKMVLDHLVIQRM K G T E R A 0 1 0 0 0 0 4 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1173.5877 O14647;A0A1B0GTU9;A0A0D9SF92 O14647 919 928 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0027819 98.033 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12545 321 13051 63574;63575 63871;63872 63871 2 GTVEGFEPADNK TLKKYDGRTKPIPKKGTVEGFEPADNKCLL PKKGTVEGFEPADNKCLLRATDGKKKISTV K G T N K C 1 0 1 1 0 0 2 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 0 1262.5779 P37108;H0YLA2 P37108 44 55 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.00014263 88.496 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.84128 0.80269 16.971 4 Median 0.77464 0.73126 NaN 1 0 Median 0.7626 0.65803 NaN 1 0 Median 0.91365 0.88111 NaN 1 0 Median 1.1511 0.95369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23366000 12337000 11030000 11907000 6550200 5357000 2245900 1202400 1043400 5580400 2978600 2601800 3632900 1605400 2027500 0 0 0 0 0 0 12546 2266 13052 63576;63577;63578;63579 63873;63874;63875;63876;63877;63878 63873 6 GTVEPQLEAR TGEVEVVIQDPMGQKGTVEPQLEARGDSTY PMGQKGTVEPQLEARGDSTYRCSYQPTMEG K G T A R G 1 1 0 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1098.5669 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 428 437 FLNA Filamin-A no no 2 2.5524E-08 141.52 By MS/MS By MS/MS 1 2 0.75102 0.68073 12.394 3 Median 0.75102 0.73588 NaN 1 0 Median 0.76297 0.62687 11.656 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40153000 22106000 18047000 3248400 1547700 1700600 36905000 20559000 16347000 0 0 0 0 0 0 0 0 0 0 0 0 12547 2088;3120 13053 63580;63581;63582 63879;63880;63881 63880 2 GTVGEPTYDAEFQHFLR DHITFAMLLARIKLKGTVGEPTYDAEFQHF VGEPTYDAEFQHFLRGNEIVLSAGSTPRIQ K G T L R G 1 1 0 1 0 1 2 2 1 0 1 0 0 2 1 0 2 0 1 1 0 0 17 0 1965.9221 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 3894 3910 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.4173E-10 83.617 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 5 2 1 1 0.90798 0.89987 23.772 14 Median 0.91167 0.8871 8.4705 3 0 Median 0.94691 0.79234 17.94 2 0 Median 0.9043 0.98916 14.365 5 2 Median 1.5257 1.3413 39.017 2 0 Median 0.78195 0.81749 NaN 1 0 Median 0.81055 0.6875 NaN 1 0 Median 154970000 78099000 76867000 76328000 37472000 38856000 10350000 4485300 5864600 65812000 34944000 30869000 848910 362420 486490 1532200 783620 748550 93954 51653 42301 12548 2865 13054 63583;63584;63585;63586;63587;63588;63589;63590;63591;63592;63593;63594;63595;63596 63882;63883;63884;63885;63886;63887;63888;63889;63890;63891;63892;63893;63894;63895 63890 14 GTVGSILDR IIKPQYVDQIPKAAKGTVGSILDRKDETKT IPKAAKGTVGSILDRKDETKTQAIVCQQLD K G T D R K 0 1 0 1 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 916.49779 P61221;D6R9I9;D6RGF4;H0Y990 P61221 182 190 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.00073228 101.54 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.1902 1.0366 66.186 5 Median 0.99151 0.9635 29.413 2 0 Median 1.1992 1.0366 NaN 1 0 Median 0.22452 0.23854 NaN 1 0 Median 1.2769 1.0658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42484000 20991000 21493000 21094000 10693000 10401000 17284000 7845300 9439200 2368600 1771900 596710 1737300 681180 1056100 0 0 0 0 0 0 12549 2550 13055 63597;63598;63599;63600;63601 63896;63897;63898;63899 63898 4 GTVIIIANHGDR TVSGDVTFGKNVSLKGTVIIIANHGDRIDI SLKGTVIIIANHGDRIDIPPGAVLENKIVS K G T D R I 1 1 1 1 0 0 0 2 1 3 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1264.6888 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 474 485 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.00063206 64.297 By MS/MS By MS/MS 1 1 1.2626 1.1585 16.755 2 Median 1.3114 1.3042 NaN 1 1 Median 1.2157 1.0291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9327600 4411100 4916500 3719600 1726800 1992900 5608000 2684300 2923600 0 0 0 0 0 0 0 0 0 0 0 0 12550 86 13056 63602;63603 63900;63901 63901 2 GTVLAEDQLAQMSK AIAKKKLAEAKYKERGTVLAEDQLAQMSKQ RGTVLAEDQLAQMSKQLDMFKTNLEEFASK R G T S K Q 2 0 0 1 0 2 1 1 0 0 2 1 1 0 0 1 1 0 0 1 0 0 14 0 1489.7446 Q96H20;H0Y8S5;D6RBI1;D6RJ86;D6RFY6 Q96H20 25 38 SNF8 Vacuolar-sorting protein SNF8 yes no 2 0.00010937 84.479 By MS/MS 1 0.95496 0.88735 NaN 1 Median 0.95496 0.88735 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18758000 10156000 8602700 18758000 10156000 8602700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12551 3664 13057 63604 63902 63902 1 GTVPDDAVEALADSLGK MCSIQSAPPEPATLKGTVPDDAVEALADSL VPDDAVEALADSLGKKEADPEDGKPVMDKV K G T G K K 3 0 0 3 0 0 1 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 17 0 1656.8206 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;H0YD33;E7EQA0;A0A0A0MR45;E7EQ12 P20810 427 443 CAST Calpastatin yes no 2 2.3738E-05 59.898 By matching By MS/MS 1 1 0.85341 0.81373 8.7465 2 Median 0.74055 0.76493 NaN 1 0 Median 0.98348 0.86565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430200 1778100 1652100 488830 283340 205490 2941400 1494700 1446600 0 0 0 0 0 0 0 0 0 0 0 0 12552 239 13058 63605;63606 63903;63904 63903 2 GTVPDDAVEALADSLGKK MCSIQSAPPEPATLKGTVPDDAVEALADSL PDDAVEALADSLGKKEADPEDGKPVMDKVK K G T K K E 3 0 0 3 0 0 1 2 0 0 2 2 0 0 1 1 1 0 0 2 0 0 18 1 1784.9156 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;H0YD33;E7EQA0;A0A0A0MR45;E7EQ12 P20810 427 444 CAST Calpastatin yes no 3 0.068425 5.2096 By MS/MS By matching By matching 2 2 1 1.1055 1.1501 47.316 5 Median 1.1467 1.2043 6.5019 2 0 Median 0.70123 0.66944 65.737 2 0 Median 1.1463 1.3104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8067600 3943400 4124200 2228400 1193200 1035200 1012200 563840 448400 4827000 2186400 2640600 0 0 0 0 0 0 0 0 0 12553 239 13059 63607;63608;63609;63610;63611 63905 63905 1 GTVQALHATGAR LAGRRVLVTGAGKGRGTVQALHATGARVVA KGRGTVQALHATGARVVAVSRTQADLDSLV R G T A R V 3 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1180.6313 J3KS22;Q7Z4W1;J3QS36 J3KS22 20 31 DCXR L-xylulose reductase yes no 2 0.00096667 58.699 By MS/MS By MS/MS By MS/MS 1 2 1 1.2912 1.1282 18.551 4 Median 1.19 1.1232 NaN 1 0 Median 1.5562 1.2915 18.503 2 0 Median 1.0033 0.93799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7529500 3133800 4395600 5159300 2139300 3020000 1171800 411750 760020 1198400 582810 615620 0 0 0 0 0 0 0 0 0 12554 1330 13060 63612;63613;63614;63615 63906;63907;63908;63909 63907 4 GTVQGQLQGPISK GKKLGLVGWVQNTDRGTVQGQLQGPISKVR DRGTVQGQLQGPISKVRHMQEWLETRGSPK R G T S K V 0 0 0 0 0 3 0 3 0 1 1 1 0 0 1 1 1 0 0 1 0 0 13 0 1311.7147 G3V2U7;P07311 G3V2U7 76 88 ACYP1 Acylphosphatase;Acylphosphatase-1 yes no 2 2.4779E-41 221.95 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.98607 0.8704 3.3094 4 Median 0.90351 0.81867 NaN 1 0 Median 1.0701 0.87767 NaN 1 0 Median 0.91018 0.87817 NaN 1 0 Median 1.0683 0.8632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87739000 40671000 47068000 22246000 11651000 10595000 55992000 24729000 31264000 5483700 2313300 3170400 4016800 1977700 2039100 0 0 0 0 0 0 12555 1110 13061 63616;63617;63618;63619 63910;63911;63912;63913;63914;63915;63916 63914 7 GTVRPANDFNPDADAK YQMWELSAVARVELKGTVRPANDFNPDADA TVRPANDFNPDADAKALRKAMKGLGTDEDT K G T A K A 3 1 2 3 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 1 0 0 16 1 1686.7962 E5RK69;P08133 P08133 355 370 ANXA6 Annexin;Annexin A6 no no 2;3 1.398E-09 107.65 By MS/MS By MS/MS By MS/MS 5 2 1 0.69007 0.69988 20.599 8 Median 0.68751 0.69381 18.894 5 0 Median 0.93076 0.84476 15.716 2 0 Median 0.60476 0.64245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152740000 81962000 70782000 82224000 47441000 34783000 60025000 28214000 31810000 10494000 6306300 4187900 0 0 0 0 0 0 0 0 0 12556 1898;854 13062 63620;63621;63622;63623;63624;63625;63626;63627 63917;63918;63919;63920;63921;63922;63923;63924;63925;63926;63927;63928;63929 63929 13 GTVTDFPGFDER ______________________________ VLRGTVTDFPGFDERADAETLRKAMKGLGT R G T E R A 0 1 0 2 0 0 1 2 0 0 0 0 0 2 1 0 2 0 0 1 0 0 12 0 1339.6044 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 7 18 ANXA5 Annexin A5;Annexin yes no 2 2.5239E-09 170.47 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.0072 0.88809 29.335 8 Median 0.92212 0.88697 2.9205 2 1 Median 1.0236 0.86013 37.481 3 0 Median 1.1202 1.2181 44.379 2 0 Median 1.0625 0.88615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113570000 55734000 57832000 38174000 18963000 19211000 47091000 23060000 24030000 24918000 12075000 12843000 3382300 1634900 1747300 0 0 0 0 0 0 12557 1909 13063 63628;63629;63630;63631;63632;63633;63634;63635 63930;63931;63932;63933;63934;63935;63936 63933 7 GTVTDFPGFDERADAETLR ______________________________ DFPGFDERADAETLRKAMKGLGTDEESILT R G T L R K 2 2 0 3 0 0 2 2 0 0 1 0 0 2 1 0 3 0 0 1 0 0 19 1 2095.9811 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 7 25 ANXA5 Annexin A5;Annexin yes no 3 0.00066402 31.462 By MS/MS By matching 1 1 1.138 1.1406 24.629 2 Median 0.89017 0.95833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4548 1.3576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8390200 4119400 4270700 8240300 4056600 4183700 0 0 0 0 0 0 149930 62869 87061 0 0 0 0 0 0 12558 1909 13064 63636;63637 63937;63938 63938 2 GTVVTGTLER PFLLPVEAVYSVPGRGTVVTGTLERGILKK SVPGRGTVVTGTLERGILKKGDECELLGHS R G T E R G 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 3 0 0 2 0 0 10 0 1031.5611 P49411 P49411 272 281 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00036244 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1 1.304 1.1758 22.046 11 Median 1.1672 1.0992 15.289 4 1 Median 1.4163 1.2105 11.325 4 0 Median 1.0653 1.0478 NaN 1 0 Median 1.5812 1.3626 NaN 1 0 Median 2.0972 2.0528 NaN 1 1 Median NaN NaN NaN 0 0 Median 152820000 66915000 85906000 61190000 28877000 32312000 65841000 26953000 38889000 14442000 7093300 7348400 9847200 3552500 6294700 1501600 439060 1062500 0 0 0 12559 2382 13065 63638;63639;63640;63641;63642;63643;63644;63645;63646;63647;63648 63939;63940;63941;63942;63943;63944;63945;63946;63947;63948;63949;63950;63951;63952;63953;63954;63955;63956 63944 18 GTVVYGEPITASLGTDGSHYWSK MSKSSAEVIAQARKKGTVVYGEPITASLGT ITASLGTDGSHYWSKNWAKAAAFVTSPPLS K G T S K N 1 0 0 1 0 0 1 4 1 1 1 1 0 0 1 3 3 1 2 2 0 0 23 0 2424.1598 Q16555;A0A1C7CYX9 Q16555 271 293 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 3 0.0084731 20.426 By MS/MS By matching 1 1 0.91815 0.84582 44.278 2 Median 0.64974 0.61845 NaN 1 0 Median 1.2974 1.1568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7227700 4028900 3198900 6831700 3854700 2977000 396050 174190 221870 0 0 0 0 0 0 0 0 0 0 0 0 12560 328 13066 63649;63650 63957;63958 63957 2 GTVYLTPYR NDMKNVPEAFKGTKKGTVYLTPYRVIFLSK FKGTKKGTVYLTPYRVIFLSKGKDAMQSFM K G T Y R V 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 2 0 2 1 0 0 9 0 1068.5604 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9 K7EIJ0 26 34 WBP2 WW domain-binding protein 2 yes no 2 0.0021293 74.127 By MS/MS By matching By matching 2 2 1 1.0858 1.0387 26.969 5 Median 1.0399 1.0023 38.803 2 0 Median 1.1013 0.94125 36.443 2 0 Median 1.0858 1.0387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27638000 11483000 16155000 17381000 7076100 10305000 9099900 3962200 5137800 1156500 444360 712180 0 0 0 0 0 0 0 0 0 12561 512 13067 63651;63652;63653;63654;63655 63959;63960 63960 2 GTWESHPETTELVVLQGR RLSLCFHPPGYSEQKGTWESHPETTELVVL ESHPETTELVVLQGRVGPAGDEEEEEEEEL K G T G R V 0 1 0 0 0 1 3 2 1 0 2 0 0 0 1 1 3 1 0 2 0 0 18 0 2038.012 P36915;A0A140T8Y2 P36915 528 545 GNL1 Guanine nucleotide-binding protein-like 1 yes no 3 1.7322E-05 49.049 By MS/MS 1 0.82993 0.79733 NaN 1 Median 0.82993 0.79733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456500 2323400 2133000 4456500 2323400 2133000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12562 2263 13068 63656 63961;63962 63961 2 GTWSTGLPK ELDPMDPSSYSDAPRGTWSTGLPKRNEAKT YSDAPRGTWSTGLPKRNEAKTGADTTAAGP R G T P K R 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 1 2 1 0 0 0 0 9 0 945.49198 O60828;H7C053 O60828 215 223 PQBP1 Polyglutamine-binding protein 1 yes no 2 0.019275 40.002 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.89698 0.88789 25.738 5 Median 1.0797 1.0428 NaN 1 0 Median 0.65008 0.55097 NaN 1 0 Median 0.7427 0.71084 NaN 1 0 Median 1.1353 0.95516 NaN 1 0 Median 0.89698 0.88789 NaN 1 0 Median NaN NaN NaN 0 0 Median 15660000 7744200 7915400 3926800 1831000 2095800 868990 543050 325940 4218000 2398200 1819800 4315000 1900300 2414700 2330700 1071600 1259200 0 0 0 12563 1633 13069 63657;63658;63659;63660;63661 63963 63963 1 GTWVQLK RVKENDQKKKEAKEKGTWVQLKRQPAPPRE KKKEAKEKGTWVQLKRQPAPPREAHFVRTN K G T L K R 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 830.46504 P46778 P46778 123 129 RPL21 60S ribosomal protein L21 yes yes 2 0.013673 75.915 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 1.4464 1.394 17.267 7 Median 1.1079 1.0249 NaN 1 0 Median 1.5926 1.394 NaN 1 0 Median 1.2555 1.1785 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4068 1.5288 13.013 2 0 Median 1.6845 1.3697 19.147 2 0 Median 63597000 30193000 33404000 32236000 15671000 16565000 518870 223040 295830 8955100 4058900 4896300 0 0 0 16201000 8017200 8183500 5685900 2222200 3463700 12564 2344 13070 63662;63663;63664;63665;63666;63667;63668 63964;63965;63966;63967 63965 4 GTWVQLKR RVKENDQKKKEAKEKGTWVQLKRQPAPPRE KKEAKEKGTWVQLKRQPAPPREAHFVRTNG K G T K R Q 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 8 1 986.56615 P46778 P46778 123 130 RPL21 60S ribosomal protein L21 yes yes 2 0.01011 68.422 By MS/MS 1 1.8759 1.9617 NaN 1 Median 1.8759 1.9617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9151400 3330600 5820700 9151400 3330600 5820700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12565 2344 13071 63669 63968 63968 1 GTYDILVTK IDQGDDGDNFYVIERGTYDILVTKDNQTRS FYVIERGTYDILVTKDNQTRSVGQYDNRGS R G T T K D 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 2 0 1 1 0 0 9 0 1008.5492 P13861;H7C1L0 P13861 182 190 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.012656 46.158 By MS/MS By matching 1 1 1.1819 1.1608 6.5262 2 Median 1.1864 1.1084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1773 1.2156 NaN 1 0 Median NaN NaN NaN 0 0 Median 10739000 5091500 5647900 8258500 3918700 4339800 0 0 0 0 0 0 0 0 0 2480800 1172800 1308100 0 0 0 12566 1998 13072 63670;63671 63969 63969 1 GTYFPTWEGLFWEK ALGGVEGILEHTLFKGTYFPTWEGLFWEKA KGTYFPTWEGLFWEKASGFEESMKWKKLTN K G T E K A 0 0 0 0 0 0 2 2 0 0 1 1 0 2 1 0 2 2 1 0 0 0 14 0 1759.8246 Q6P2Q9;I3L3Z8 Q6P2Q9 1492 1505 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.055752 23.749 By MS/MS By matching By matching By matching By matching 3 2 2 1 1 1.0161 0.96205 15.052 9 Median 1.0161 0.97727 5.7097 3 0 Median 1.2637 1.1238 5.5736 2 0 Median 0.81135 0.88577 0.52046 2 0 Median 0.77066 0.6987 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0733 0.90359 NaN 1 0 Median 10545000 5471500 5073100 4923900 2377400 2546500 428010 187060 240940 4854500 2752100 2102400 67646 29142 38504 0 0 0 270590 125820 144770 12567 3157 13073 63672;63673;63674;63675;63676;63677;63678;63679;63680 63970 63970 1 GTYFTHEAK LCLLIILGRYFARHKGTYFTHEAKGADDAA YFARHKGTYFTHEAKGADDAADADTAIINA K G T A K G 1 0 0 0 0 0 1 1 1 0 0 1 0 1 0 0 2 0 1 0 0 0 9 0 1052.4927 A0A087X1W8;A0A0A0MTJ8;X5DQS5;Q9BY67 A0A087X1W8 374 382 CADM1 Cell adhesion molecule 1 yes no 2 0.01726 41.876 By matching By MS/MS 1 2 1.3513 1.2723 5.0359 3 Median 1.2953 1.3171 NaN 1 0 Median 1.4324 1.2319 4.5668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4932000 2188100 2743900 818660 353160 465500 4113300 1834900 2278400 0 0 0 0 0 0 0 0 0 0 0 0 12568 124 13074 63681;63682;63683 63971;63972 63971 2 GTYLATFHQR ERARWTETYVRWSPKGTYLATFHQRGIALW RWSPKGTYLATFHQRGIALWGGEKFKQIQR K G T Q R G 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 2 0 1 0 0 0 10 0 1192.5989 P55884;C9JQN7 P55884 346 355 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2;3 7.501E-11 178.83 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 1.2681 1.2195 30.431 7 Median 1.6792 1.6166 39.861 2 1 Median 1.2188 1.0012 13.824 3 0 Median 1.499 1.597 NaN 1 1 Median 1.0811 0.91899 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135940000 53428000 82509000 39158000 14534000 24624000 84574000 35189000 49385000 7619800 1944700 5675200 4585500 1760000 2825500 0 0 0 0 0 0 12569 2504 13075 63684;63685;63686;63687;63688;63689;63690;63691;63692;63693;63694;63695;63696 63973;63974;63975;63976;63977;63978;63979;63980;63981;63982;63983;63984;63985;63986 63981 14 GTYQGLTATVLK FFHGVREIVREQGLKGTYQGLTATVLKQGS GLKGTYQGLTATVLKQGSNQAIRFFVMTSL K G T L K Q 1 0 0 0 0 1 0 2 0 0 2 1 0 0 0 0 3 0 1 1 0 0 12 0 1250.6871 P53007;B4DP62 P53007 179 190 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 2 0.00060982 68.893 By MS/MS By MS/MS 1 2 1.6553 1.3914 32.511 3 Median 0.90905 0.82261 NaN 1 0 Median 1.7123 1.44 4.8602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95624000 48768000 46856000 80967000 43354000 37613000 14657000 5413700 9243200 0 0 0 0 0 0 0 0 0 0 0 0 12570 2464 13076 63697;63698;63699 63987;63988;63989 63987 3 GTYQPLSTR ATSGLDHQLKIFDLRGTYQPLSTRTLPHGA KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG R G T T R T 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 1 2 0 1 0 0 0 9 0 1021.5193 O15213 O15213 390 398 WDR46 WD repeat-containing protein 46 yes yes 2 0.058746 43.083 By MS/MS 1 1.0948 1.1603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0948 1.1603 NaN 1 1 Median NaN NaN NaN 0 0 Median 2595600 1490300 1105300 0 0 0 0 0 0 0 0 0 0 0 0 2595600 1490300 1105300 0 0 0 12571 1531 13077 63700 63990 63990 1 GVACQEGADCMPVQGK G V G K 2 0 0 1 2 2 1 3 0 0 0 1 1 0 1 0 0 0 0 2 0 0 16 0 1705.7222 REV__Q16568 yes yes 2 0.016113 42.336 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5061300 5061300 0 5061300 5061300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12572 4541 13078 63701 63991 63991 2007 1 GVAGVPAEFSIWTR GGAHKVRAGGTGLERGVAGVPAEFSIWTRE RGVAGVPAEFSIWTREAGAGGLSIAVEGPS R G V T R E 2 1 0 0 0 0 1 2 0 1 0 0 0 1 1 1 1 1 0 2 0 0 14 0 1488.7725 Q14315 Q14315 2327 2340 FLNC Filamin-C yes yes 2 5.2616E-07 118.28 By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 0.9974 0.87402 22.765 9 Median 1.1904 1.1268 6.2663 3 0 Median 0.98715 0.83675 7.2284 3 0 Median 1.3055 1.4501 NaN 1 0 Median 0.94464 0.8233 1.23 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64489000 30703000 33787000 39927000 17930000 21997000 21022000 11198000 9823700 2941300 1284100 1657200 599300 290580 308730 0 0 0 0 0 0 12573 2871 13079 63702;63703;63704;63705;63706;63707;63708;63709;63710 63992;63993;63994;63995;63996;63997;63998;63999;64000;64001;64002 63993 11 GVAIGQTSLTASVTNK LDEALDNYTITFLIRGVAIGQTSLTASVTN VAIGQTSLTASVTNKAGQRINSAPQQIEVF R G V N K A 2 0 1 0 0 1 0 2 0 1 1 1 0 0 0 2 3 0 0 2 0 0 16 0 1545.8362 Q8TEM1 Q8TEM1 1048 1063 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 3.4417E-10 151.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 1.2852 1.2423 22.126 11 Median 1.3247 1.3034 6.7891 2 0 Median 1.2284 1.0882 6.4502 2 0 Median 0.93395 1.0199 17.58 3 0 Plateau 1.5298 1.4006 11.55 2 0 Median NaN NaN NaN 0 0 Median 1.6804 1.4232 14.887 2 1 Median 125420000 61200000 64220000 17699000 7608900 10090000 14106000 6165900 7940500 83317000 43691000 39627000 8922000 3239600 5682400 0 0 0 1375400 495040 880340 12574 3477 13080 63711;63712;63713;63714;63715;63716;63717;63718;63719;63720;63721 64003;64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014;64015 64011 13 GVAINFVK LYIHRIGRSGRYGRKGVAINFVKNDDIRIL SGRYGRKGVAINFVKNDDIRILRDIEQYYS K G V V K N 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 846.49634 P38919;I3L3H2 P38919 375 382 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.0055194 75.311 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1 1.262 1.1506 11.065 8 Median 1.0802 1.0231 NaN 1 0 Median 1.5302 1.3355 5.765 2 0 Median 1.179 1.1359 NaN 1 0 Median 1.2253 1.1044 NaN 1 0 Median 1.2047 1.1902 15.89 2 0 Median 1.3473 1.1655 NaN 1 0 Median 58749000 26215000 32534000 4324200 1963800 2360400 3089800 1064700 2025100 15964000 7096100 8867900 26792000 12080000 14712000 8318300 3901800 4416500 260410 108250 152150 12575 2278 13081 63722;63723;63724;63725;63726;63727;63728;63729 64016;64017;64018;64019;64020;64021;64022 64019 7 GVAINFVTEEDKR NYIHRIGRGGRFGRKGVAINFVTEEDKRIL RKGVAINFVTEEDKRILRDIETFYNTTVEE K G V K R I 1 1 1 1 0 0 2 1 0 1 0 1 0 1 0 0 1 0 0 2 0 0 13 1 1476.7573 Q14240 Q14240 371 383 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes yes 2 0.0012381 63.283 By MS/MS By matching 2 1 1.155 1.2215 21.189 3 Plateau 1.0873 1.1245 13.539 2 0 Median NaN NaN NaN 0 0 Median 0.80139 0.81056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16003000 7615500 8387700 12644000 6126200 6517600 0 0 0 3359500 1489300 1870200 0 0 0 0 0 0 0 0 0 12576 2867 13082 63730;63731;63732 64023 64023 1 GVAINMVTEEDKR NYIHRIGRGGRFGRKGVAINMVTEEDKRTL RKGVAINMVTEEDKRTLRDIETFYNTSIEE K G V K R T 1 1 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 13 1 1460.7293 P60842 P60842 370 382 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2;3 2.7302E-31 215.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 8 7 7 3 2 4 1.0962 1.0619 30.079 29 Median 1.1008 1.0934 18.342 8 0 Median 1.0145 0.94244 47.271 6 0 Median 1.2655 1.3604 14.612 6 3 Median 1.0563 1.0038 8.1455 3 0 Median 1.7203 1.7811 3.2507 2 0 Median 1.0329 0.87742 20.881 4 0 Median 476970000 221520000 255450000 166760000 76726000 90030000 85256000 40961000 44295000 105370000 47135000 58237000 104360000 50765000 53591000 8212700 2620700 5592000 7014700 3307900 3706800 12577 2529 13083;13084 63733;63734;63735;63736;63737;63738;63739;63740;63741;63742;63743;63744;63745;63746;63747;63748;63749;63750;63751;63752;63753;63754;63755;63756;63757;63758;63759;63760;63761;63762;63763 64024;64025;64026;64027;64028;64029;64030;64031;64032;64033;64034;64035;64036;64037;64038;64039;64040;64041;64042;64043;64044;64045;64046;64047;64048;64049;64050;64051;64052;64053;64054;64055;64056 64052 1209 33 GVAMNPVEHPFGGGNHQHIGK YHKYKAKRNCWPRVRGVAMNPVEHPFGGGN VEHPFGGGNHQHIGKPSTIRRDAPAGRKVG R G V G K P 1 0 2 0 0 1 1 5 3 1 0 1 1 1 2 0 0 0 0 2 0 0 21 0 2182.049 P62917;E9PKU4;E9PP36 P62917 201 221 RPL8 60S ribosomal protein L8 yes no 4 0.01353 17.784 By MS/MS By matching By matching By matching 1 1 1 1 0.85227 0.77442 18.381 4 Median 0.737 0.67456 NaN 1 0 Median 0.76 0.64312 NaN 1 0 Median 0.95574 0.91764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0567 0.88906 NaN 1 0 Median 21327000 12029000 9297100 15314000 8893300 6420600 2491000 1356300 1134700 2175500 1263700 911780 0 0 0 0 0 0 1346200 516230 830000 12578 2610 13085 63764;63765;63766;63767 64057;64058 64058 2 GVAMNPVEHPFGGGNHQHIGKPSTIR YHKYKAKRNCWPRVRGVAMNPVEHPFGGGN GGGNHQHIGKPSTIRRDAPAGRKVGLIAAR R G V I R R 1 1 2 0 0 1 1 5 3 2 0 1 1 1 3 1 1 0 0 2 0 0 26 1 2736.3667 P62917;E9PKU4;E9PP36 P62917 201 226 RPL8 60S ribosomal protein L8 yes no 3;4;5 2.3729E-13 57.922 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 4 1 1 1 1 0.76066 0.73348 20.594 10 Median 0.7151 0.7233 8.596 2 0 Median 0.73403 0.66249 3.4051 4 0 Median 0.83953 0.91465 NaN 1 0 Median 0.87181 0.82273 NaN 1 0 Median 1.1969 1.2663 NaN 1 0 Median 0.86687 0.77254 NaN 1 0 Median 155050000 91191000 63855000 56540000 34921000 21620000 81089000 46512000 34577000 3452700 1971800 1480900 3269600 2037700 1231900 5793400 3019200 2774200 4902000 2730300 2171700 12579 2610 13086 63768;63769;63770;63771;63772;63773;63774;63775;63776;63777 64059;64060;64061;64062;64063;64064;64065;64066;64067;64068;64069;64070 64061 11 GVAMNPVEHPFGGGNHQHIGKPSTIRR YHKYKAKRNCWPRVRGVAMNPVEHPFGGGN GGNHQHIGKPSTIRRDAPAGRKVGLIAARR R G V R R D 1 2 2 0 0 1 1 5 3 2 0 1 1 1 3 1 1 0 0 2 0 0 27 2 2892.4678 P62917;E9PKU4;E9PP36 P62917 201 227 RPL8 60S ribosomal protein L8 yes no 6 0.062263 4.9778 By MS/MS 1 0.69824 0.64665 NaN 1 Median NaN NaN NaN 0 0 Median 0.69824 0.64665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2157500 1036100 1121400 0 0 0 2157500 1036100 1121400 0 0 0 0 0 0 0 0 0 0 0 0 12580 2610 13087 63778 64071 64071 0 GVAPLWMR APKMYKEEGLKAFYKGVAPLWMRQIPYTMM GLKAFYKGVAPLWMRQIPYTMMKFACFERT K G V M R Q 1 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 0 8 0 928.49529 Q00325;F8VVM2 Q00325 219 226 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.0024073 133.99 By MS/MS By MS/MS By MS/MS 5 4 2 1.0119 0.999 16.461 11 Median 0.90788 0.88447 6.5798 5 0 Median 1.4803 1.2137 2.66 4 0 Median 1.023 1.0434 6.1547 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 243880000 117970000 125910000 154780000 81727000 73055000 74350000 28789000 45561000 14750000 7453500 7296800 0 0 0 0 0 0 0 0 0 12581 2674 13088;13089 63779;63780;63781;63782;63783;63784;63785;63786;63787;63788;63789 64072;64073;64074;64075;64076;64077;64078;64079;64080;64081;64082;64083;64084;64085;64086;64087 64080 1352 16 GVATNWLR AVVVEYETKAGRINKGVATNWLRAKEPAGE KAGRINKGVATNWLRAKEPAGENGGRALVP K G V L R A 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 915.49265 P16435;H0Y4R2;E7EMD0 P16435 488 495 POR NADPH--cytochrome P450 reductase yes no 2 0.0027345 105.39 By MS/MS By matching 1 1 1.3297 1.2096 4.1354 2 Median 1.2316 1.1748 NaN 1 0 Median 1.4357 1.2455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8702400 3542800 5159600 5777700 2514500 3263100 2924700 1028300 1896400 0 0 0 0 0 0 0 0 0 0 0 0 12582 2030 13090 63790;63791 64088 64088 1 GVAYTLLTPK THTHRIGRTGRAGEKGVAYTLLTPKDSNFA RAGEKGVAYTLLTPKDSNFAGDLVRNLEGA K G V P K D 1 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 2 0 1 1 0 0 10 0 1061.6121 Q86XP3;A0A0A0MSJ0 Q86XP3 596 605 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.0003685 123.72 By matching By MS/MS By MS/MS 1 2 2 0.86371 0.92203 9.0735 5 Median 0.92087 0.91894 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85535 0.92231 0.041858 2 0 Median NaN NaN NaN 0 0 Median 0.83067 0.86786 16.928 2 0 Median NaN NaN NaN 0 0 Median 33757000 18133000 15624000 2012400 1014800 997600 0 0 0 25602000 13645000 11958000 0 0 0 6142500 3473700 2668800 0 0 0 12583 3302 13091 63792;63793;63794;63795;63796 64089;64090;64091;64092 64091 4 GVDDLDFFIGDEAIEKPTYATK ______________________________ FIGDEAIEKPTYATKWPIRHGIVEDWDLME K G V T K W 2 0 0 4 0 0 2 2 0 2 1 2 0 2 1 0 2 0 1 1 0 0 22 1 2443.1795 B4DXW1;P61158;F8WDR7 B4DXW1 3 24 ACTR3 Actin-related protein 3 yes no 3 0.0024704 25.67 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.98999 0.93304 10.187 6 Median 1.0705 1.0136 6.717 2 0 Median 1.0203 0.94121 17.281 2 0 Median 0.84276 0.87823 NaN 1 0 Median 0.94826 0.90067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33657000 16638000 17018000 6802000 2998800 3803200 5836600 2669100 3167500 18348000 9758300 8590200 2669400 1212100 1457400 0 0 0 0 0 0 12584 607 13092 63797;63798;63799;63800;63801;63802 64093;64094;64095 64094 3 GVDEATIIDILTK PSSDVAALHKAIMVKGVDEATIIDILTKRN VKGVDEATIIDILTKRNNAQRQQIKAAYLQ K G V T K R 1 0 0 2 0 0 1 1 0 3 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1386.7606 P04083;Q5T3N1;Q5T3N0 P04083 59 71 ANXA1 Annexin A1;Annexin yes no 2 5.735E-07 150.94 By MS/MS By MS/MS By MS/MS By matching 1 5 1 2 1.2607 1.0889 13.614 9 Median 1.419 1.3064 NaN 1 0 Median 1.1882 1.0114 8.5299 5 0 Median 1.3505 1.3006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4328 1.1752 17.933 2 0 Median 406940000 182260000 224680000 32533000 13182000 19351000 356040000 161440000 194610000 18022000 7495800 10527000 0 0 0 0 0 0 338210 142580 195640 12585 1844 13093 63803;63804;63805;63806;63807;63808;63809;63810;63811 64096;64097;64098;64099;64100;64101;64102;64103 64103 8 GVDEATIIDILTKR PSSDVAALHKAIMVKGVDEATIIDILTKRN KGVDEATIIDILTKRNNAQRQQIKAAYLQE K G V K R N 1 1 0 2 0 0 1 1 0 3 1 1 0 0 0 0 2 0 0 1 0 0 14 1 1542.8617 P04083;Q5T3N1;Q5T3N0 P04083 59 72 ANXA1 Annexin A1;Annexin yes no 2;3 0.00073064 57.492 By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 5 2 4 1 1.3277 1.287 20.206 18 Median 1.2452 1.2834 26.035 6 1 Median 1.2505 1.1219 10.568 5 0 Median 1.3393 1.4807 2.1275 2 0 Median 1.3638 1.287 16.984 4 0 Median 1.7291 1.8465 NaN 1 0 Median NaN NaN NaN 0 0 Median 74394000 30692000 43701000 32278000 12432000 19846000 39116000 17009000 22107000 1744700 718320 1026400 899140 402600 496540 356090 130390 225700 0 0 0 12586 1844 13094 63812;63813;63814;63815;63816;63817;63818;63819;63820;63821;63822;63823;63824;63825;63826;63827;63828;63829 64104;64105;64106;64107;64108;64109;64110;64111;64112;64113;64114;64115 64106 12 GVDEVTIVNILTNR AERDALNIETAIKTKGVDEVTIVNILTNRS KGVDEVTIVNILTNRSNAQRQDIAFAYQRR K G V N R S 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 2 0 0 3 0 0 14 0 1541.8413 P07355;H0YN42;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9 P07355 50 63 ANXA2 Annexin A2;Annexin yes no 2;3 1.4116E-19 180.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 7 4 5 2 6 1.8077 0.99813 20.216 27 Linear 1.208 1.2061 1.1467 3 2 Plateau 1.1927 1.0174 7.1571 7 0 Median 1.2502 1.2084 14.276 4 0 Linear 1.2372 0.99357 12.441 5 2 Median 0.6727 0.67706 19.357 2 0 Median 1.0693 0.85328 27.828 6 0 Median 1382300000 604350000 777990000 38926000 17781000 21145000 117220000 52275000 64947000 86428000 37343000 49085000 1133100000 493390000 639670000 505340 265330 240010 6197000 3294300 2902700 12587 1885 13095 63830;63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841;63842;63843;63844;63845;63846;63847;63848;63849;63850;63851;63852;63853;63854;63855;63856 64116;64117;64118;64119;64120;64121;64122;64123;64124;64125;64126;64127;64128;64129;64130;64131;64132;64133;64134;64135;64136;64137;64138 64117 23 GVDGSFLAR PNITGVEAENLLLTRGVDGSFLARPSKSNP NLLLTRGVDGSFLARPSKSNPGDFTLSVRR R G V A R P 1 1 0 1 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 920.47158 Q06124;A0A1W2PPU4 Q06124 24 32 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.010786 63.565 By MS/MS 1 1.1503 0.99553 NaN 1 Median NaN NaN NaN 0 0 Median 1.1503 0.99553 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6008000 2690800 3317200 0 0 0 6008000 2690800 3317200 0 0 0 0 0 0 0 0 0 0 0 0 12588 2721 13096 63857 64139 64139 1 GVDIVMDPLGGSDTAK HTTDYVDEIKKISPKGVDIVMDPLGGSDTA VDIVMDPLGGSDTAKGYNLLKPMGKVVTYG K G V A K G 1 0 0 3 0 0 0 3 0 1 1 1 1 0 1 1 1 0 0 2 0 0 16 0 1573.7658 Q99536;K7ESA3;K7ENX2;K7EM19 Q99536 256 271 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 1.5033E-38 149.38 By MS/MS By MS/MS By MS/MS 3 2 1 1.0881 0.97351 9.7878 5 Median 0.9885 0.91353 13.736 2 1 Median 1.1992 1.0266 7.513 2 0 Median 0.96625 0.95381 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53012000 24341000 28671000 35088000 16212000 18876000 13533000 6005800 7527400 4390400 2123000 2267300 0 0 0 0 0 0 0 0 0 12589 3750 13097 63858;63859;63860;63861;63862;63863 64140;64141;64142;64143;64144;64145;64146 64143 7 GVDLQENNPASR KNEPQNATGAPGRNRGVDLQENNPASRSQC RNRGVDLQENNPASRSQCCSN_________ R G V S R S 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1298.6215 P51148;K7EIP6 P51148 199 210 RAB5C Ras-related protein Rab-5C yes no 2 1.3119E-21 197.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 0.98127 0.86214 12.707 6 Median 0.9616 0.91344 NaN 1 0 Median 1.1594 0.98048 NaN 1 0 Median 1.0248 0.98139 NaN 1 0 Median 0.98631 0.81372 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92905 0.75412 6.9995 2 2 Median 38390000 18371000 20019000 21882000 10737000 11145000 7621500 3362000 4259500 4515900 2241600 2274400 832340 355860 476480 0 0 0 3538000 1674200 1863900 12590 2427 13098 63864;63865;63866;63867;63868;63869;63870 64147;64148;64149;64150;64151;64152;64153;64154;64155;64156;64157;64158;64159 64148 13 GVDLTEPTQPTR KNEPQNPGANSARGRGVDLTEPTQPTRNQC RGRGVDLTEPTQPTRNQCCSN_________ R G V T R N 0 1 0 1 0 1 1 1 0 0 1 0 0 0 2 0 3 0 0 1 0 0 12 0 1312.6623 P20339 P20339 198 209 RAB5A Ras-related protein Rab-5A yes yes 2 3.3934E-06 108.67 By MS/MS By matching 1 1 0.78149 0.78272 31.82 2 Median 0.65905 0.62502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92668 0.98022 NaN 1 0 Median NaN NaN NaN 0 0 Median 13507000 8005000 5502000 11831000 6935800 4895500 0 0 0 0 0 0 0 0 0 1675700 1069200 606550 0 0 0 12591 2078 13099 63871;63872 64160 64160 1 GVDLVLNSLAEEK DTSFEQHVLWHTGGKGVDLVLNSLAEEKLQ GKGVDLVLNSLAEEKLQASVRCLATHGRFL K G V E K L 1 0 1 1 0 0 2 1 0 0 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1385.7402 P49327;A0A0U1RQF0 P49327 1740 1752 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.3015E-15 182.28 By MS/MS By MS/MS 2 4 1.2123 1.115 23.54 6 Median 1.0267 0.9882 1.6574 2 1 Median 1.4367 1.2599 29.629 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 224200000 95273000 128930000 81106000 37034000 44072000 143100000 58239000 84856000 0 0 0 0 0 0 0 0 0 0 0 0 12592 2377 13100 63873;63874;63875;63876;63877;63878 64161;64162;64163;64164;64165;64166;64167;64168;64169;64170 64168 10 GVDLYLR KFFFDILSVVDLNPRGVDLYLRILMAIDSE SVVDLNPRGVDLYLRILMAIDSELVDRDVV R G V L R I 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 1 1 0 0 7 0 834.45995 O43592;F8WDU6 O43592 138 144 XPOT Exportin-T yes no 2 0.059164 37.646 By MS/MS 1 1.4838 1.4612 NaN 1 Median 1.4838 1.4612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2261400 1002000 1259400 2261400 1002000 1259400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12593 1576 13101 63879 64171 64171 1 GVDYNAEIPFEK RAAGIEIQKKRKRKRGVDYNAEIPFEKKPA RKRGVDYNAEIPFEKKPALGFYDTSEENYQ R G V E K K 1 0 1 1 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 12 0 1380.6561 Q99459 Q99459 207 218 CDC5L Cell division cycle 5-like protein yes yes 2 3.4142E-06 108.57 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1 0.87359 0.78404 28.986 7 Median NaN NaN NaN 0 0 Median 1.7849 1.5953 NaN 1 0 Median 0.73174 0.78404 NaN 1 0 Median 0.91487 0.77911 22.997 3 0 Median 0.85532 0.87407 NaN 1 0 Median 0.87359 0.72354 NaN 1 0 Median 75140000 41781000 33359000 0 0 0 418940 193820 225110 57656000 32368000 25288000 4717100 2539400 2177800 11087000 6047400 5039900 1261200 632430 628790 12594 3745 13102 63880;63881;63882;63883;63884;63885;63886 64172;64173;64174;64175 64173 4 GVEAGPDLLQ ARGGAQQQRGRGQGKGVEAGPDLLQ_____ RGQGKGVEAGPDLLQ_______________ K G V L Q - 1 0 0 1 0 1 1 2 0 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 997.50803 B7Z645;H0YAA0 B7Z645 455 464 SYNCRIP yes no 2 0.053987 43.124 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4874200 0 0 4874200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12595 634 13103 63887 64176 64176 1 GVEAVAIHGGKDQEER KKADVDAIHEYLLLKGVEAVAIHGGKDQEE VEAVAIHGGKDQEERTKAIEAFREGKKDVL K G V E R T 2 1 0 1 0 1 3 3 1 1 0 1 0 0 0 0 0 0 0 2 0 0 16 1 1693.8384 Q9UJV9 Q9UJV9 456 471 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.00033172 38.995 By MS/MS By MS/MS By MS/MS 1 2 2 1.0375 1.1035 25.005 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0375 1.1035 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95071 1.0199 7.3429 2 0 Median 1.7743 1.5866 18.239 2 0 Median 8081300 3648300 4432900 0 0 0 0 0 0 1474800 695090 779710 0 0 0 4017800 2045800 1972000 2588700 907430 1681200 12596 4299 13104 63888;63889;63890;63891;63892 64177;64178;64179;64180;64181 64181 5 GVEAVGSYAENQR IMSYQIWVDYINFLKGVEAVGSYAENQRIT LKGVEAVGSYAENQRITAVRRVYQRGCVNP K G V Q R I 2 1 1 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 1 2 0 0 13 0 1378.6477 Q12996;E9PLP8 Q12996 152 164 CSTF3 Cleavage stimulation factor subunit 3 yes no 2;3 2.5582E-10 177.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 4 1 1 1.1034 1.0492 16.102 8 Median 0.99801 0.97698 NaN 1 0 Median 1.3833 1.1987 NaN 1 0 Median 0.98826 1.0108 22.659 4 1 Median 1.2121 1.0448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2469 1.0891 NaN 1 0 Median 142320000 69162000 73157000 2699500 1418400 1281100 3721400 1629300 2092100 111230000 55035000 56194000 24129000 10889000 13240000 0 0 0 540330 190780 349550 12597 2777 13105 63893;63894;63895;63896;63897;63898;63899;63900 64182;64183;64184;64185;64186;64187;64188;64189;64190 64184 8 GVEEEEEDGEMRE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ IRGVEEEEEDGEMRE_______________ R G V R E - 0 1 0 1 0 0 7 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 13 1 1536.5886 P62306 P62306 74 86 SNRPF Small nuclear ribonucleoprotein F yes yes 2 0.00012718 85.377 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.1433 0.92666 9.1202 5 Median NaN NaN NaN 0 0 Median 1.2434 1.0057 NaN 1 0 Median 0.93322 0.93292 NaN 1 0 Median 1.1433 0.82569 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1463 0.86568 9.6262 2 0 Median 6985900 3223000 3762900 0 0 0 663090 291670 371420 2328300 1222700 1105600 890070 375870 514200 0 0 0 3104400 1332700 1771600 12598 2582 13106 63901;63902;63903;63904;63905 64191;64192;64193;64194;64195;64196;64197;64198 64195 8 GVEGLIDIENPNR DESEDEEDDYQQKRKGVEGLIDIENPNRVA RKGVEGLIDIENPNRVAQTTKKVTQLDLDG K G V N R V 0 1 2 1 0 0 2 2 0 2 1 0 0 0 1 0 0 0 0 1 0 0 13 0 1424.726 Q13442 Q13442 76 88 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2 3.8784E-08 169.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.91037 0.77004 16.42 5 Median 0.78515 0.74575 NaN 1 0 Median 0.91037 0.77004 NaN 1 0 Median 0.96937 0.93138 NaN 1 0 Median 0.9717 0.80171 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72947 0.59117 NaN 1 0 Median 37160000 19123000 18037000 20440000 10751000 9689200 3684500 1846800 1837700 11461000 5700400 5760900 841640 392210 449430 0 0 0 732650 432860 299790 12599 2818 13107 63906;63907;63908;63909;63910 64199;64200;64201;64202;64203;64204;64205 64200 7 GVEGPQGSPRPPAPIQQLNR AKYIRQAPPTAAMMRGVEGPQGSPRPPAPI QGSPRPPAPIQQLNRSSSERDGPPVENEMF R G V N R S 1 2 1 0 0 3 1 3 0 1 1 0 0 0 5 1 0 0 0 1 0 0 20 1 2097.1079 Q96JM2;H3BLX4 Q96JM2 1159 1178 ZNF462 Zinc finger protein 462 yes no 3 9.166E-09 69.522 By MS/MS 1 0.97828 1.0751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97828 1.0751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9165900 3852500 5313400 0 0 0 0 0 0 9165900 3852500 5313400 0 0 0 0 0 0 0 0 0 12600 3686 13108 63911 64206 64206 1 GVEGYGNDQTYFEEIK EDEGLLTTDISIDLKGVEGYGNDQTYFEEI VEGYGNDQTYFEEIKQFYYRDEFSHQVQEW K G V I K Q 0 0 1 1 0 1 3 3 0 1 0 1 0 1 0 0 1 0 2 1 0 0 16 0 1847.8214 Q7KZ85 Q7KZ85 675 690 SUPT6H Transcription elongation factor SPT6 yes yes 2 1.3817E-06 80.69 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 1 0.87902 0.96313 9.956 6 Median 0.87637 0.84392 NaN 1 0 Median 1.2607 1.1026 NaN 1 0 Median 0.86653 0.96313 2.312 2 2 Median 1.103 1.0045 NaN 1 0 Median 0.81331 0.8623 NaN 1 0 Median NaN NaN NaN 0 0 Median 21556000 10362000 11193000 3773300 1844500 1928800 1231900 546170 685710 13553000 6328900 7223800 1047900 475870 572040 1950100 1167100 783040 0 0 0 12601 3213 13109 63912;63913;63914;63915;63916;63917 64207;64208;64209;64210;64211 64209 5 GVEICIATPGR YGGAPKGPQIRDLERGVEICIATPGRLIDF DLERGVEICIATPGRLIDFLECGKTNLRRT R G V G R L 1 1 0 0 1 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 11 0 1171.6019 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 217 227 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00011141 122.13 By MS/MS By MS/MS 1 1 0.9468 0.95052 12.003 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86294 0.87317 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0388 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median 38371000 18501000 19870000 0 0 0 0 0 0 21626000 11313000 10312000 0 0 0 16745000 7187100 9557800 0 0 0 12602 1334;343 13110 63918;63919 64212;64213;64214 64214 3 GVEKPPHLAALILAR RPPKLQRNSRGGQGRGVEKPPHLAALILAR GVEKPPHLAALILARGGSKGIPLKNIKHLA R G V A R G 3 1 0 0 0 0 1 1 1 1 3 1 0 0 2 0 0 0 0 1 0 0 15 1 1583.9511 Q8NFW8;F5H296 Q8NFW8 38 52 CMAS N-acylneuraminate cytidylyltransferase yes no 3;4 1.5032E-06 86.944 By MS/MS By MS/MS 2 2 0.856 0.84208 19.781 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71978 0.73217 NaN 1 0 Median 1.018 0.96851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102380000 50046000 52332000 0 0 0 0 0 0 44398000 22041000 22357000 57979000 28005000 29975000 0 0 0 0 0 0 12603 3441 13111 63920;63921;63922;63923 64215;64216;64217;64218;64219;64220 64215 6 GVEPSPSPIKPGDIK RAFSGSGNRLDGKKKGVEPSPSPIKPGDIK GVEPSPSPIKPGDIKRGIPNYEFKLGKITF K G V I K R 0 0 0 1 0 0 1 2 0 2 0 2 0 0 4 2 0 0 0 1 0 0 15 1 1519.8246 Q92890;C9JNP9 Q92890 241 255 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 3 0.00012253 50.155 By MS/MS By MS/MS 1 1 0.66867 0.64563 13.592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56016 0.58647 NaN 1 0 Median 0.7982 0.71076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8451800 5200900 3250900 0 0 0 0 0 0 4963800 3116500 1847200 3488000 2084400 1403700 0 0 0 0 0 0 12604 3562 13112 63924;63925 64221;64222 64221 2 GVEPSPSPIKPGDIKR RAFSGSGNRLDGKKKGVEPSPSPIKPGDIK VEPSPSPIKPGDIKRGIPNYEFKLGKITFI K G V K R G 0 1 0 1 0 0 1 2 0 2 0 2 0 0 4 2 0 0 0 1 0 0 16 2 1675.9257 Q92890 Q92890 241 256 UFD1L Ubiquitin fusion degradation protein 1 homolog yes yes 3;4 2.8262E-05 72.898 By MS/MS By matching By MS/MS 2 1 2 0.67899 0.6792 17.865 5 Median 0.56776 0.60112 30.037 2 1 Median NaN NaN NaN 0 0 Median 0.59129 0.66962 NaN 1 0 Median 0.71702 0.71725 7.7074 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8499900 5107400 3392600 3204900 2190900 1014000 0 0 0 1631500 889500 742030 3663500 2027000 1636500 0 0 0 0 0 0 12605 3562 13113 63926;63927;63928;63929;63930 64223;64224;64225;64226 64226 4 GVETIANDVVSLATK PAGLITPIVFNAHIKGVETIANDVVSLATK GVETIANDVVSLATKAREGKLQPHEFQGGT K G V T K A 2 0 1 1 0 0 1 1 0 1 1 1 0 0 0 1 2 0 0 3 0 0 15 0 1515.8144 P10515;H0YDD4;E9PEJ4 P10515 533 547 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 3.0856E-09 130.01 By MS/MS By MS/MS By matching By matching 1 2 2 1 0.97885 0.89881 25.121 6 Median 1.0502 0.98257 NaN 1 0 Median 1.1859 1.0261 31.326 2 0 Median 0.89328 0.95014 27.491 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78675 0.65869 NaN 1 0 Median 48272000 20965000 27307000 17066000 8047700 9018700 28803000 11549000 17253000 2101300 1238200 863060 0 0 0 0 0 0 301820 129380 172440 12606 1938 13114 63931;63932;63933;63934;63935;63936 64227;64228;64229;64230;64231 64230 5 GVEVHIVADATSSR THVCIQQTALELVGRGVEVHIVADATSSRS RGVEVHIVADATSSRSMMDRMFALERLART R G V S R S 2 1 0 1 0 0 1 1 1 1 0 0 0 0 0 2 1 0 0 3 0 0 14 0 1439.7369 Q96CN7 Q96CN7 227 240 ISOC1 Isochorismatase domain-containing protein 1 yes yes 2;3 0.00020703 69.721 By MS/MS By MS/MS By MS/MS 2 2 2 0.99018 0.92771 31.174 6 Median 0.99018 0.9256 34.272 2 0 Median 1.5165 1.2691 12.445 2 0 Median 0.71576 0.70402 7.1467 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33337000 17688000 15649000 19835000 10619000 9216000 7616700 3218500 4398300 5885000 3850000 2035000 0 0 0 0 0 0 0 0 0 12607 3619 13115 63937;63938;63939;63940;63941;63942 64232;64233;64234;64235;64236;64237 64234 5 GVEVTVGHEQEEGGK GLCCIAPVLAAKVLRGVEVTVGHEQEEGGK GVEVTVGHEQEEGGKWPYAGTAEAIKALGA R G V G K W 0 0 0 0 0 1 4 4 1 0 0 1 0 0 0 0 1 0 0 3 0 0 15 0 1553.7322 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3 A0A096LPI6 200 214 C21orf33 yes no 2;3 8.8591E-05 59.542 By MS/MS By MS/MS 2 2 1.3311 1.1852 29.076 4 Median 0.95785 0.91456 16.529 2 0 Median 1.7187 1.4585 9.2108 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8615300 3682300 4932900 4325400 2050100 2275300 4289800 1632300 2657600 0 0 0 0 0 0 0 0 0 0 0 0 12608 144 13116 63943;63944;63945;63946 64238;64239;64240;64241;64242;64243;64244 64239 7 GVFDESVR RSLPPARAAVLDHLRGVFDESVRAHLAALD AVLDHLRGVFDESVRAHLAALDETPVAGPP R G V V R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 907.43995 Q6P9B9 Q6P9B9 79 86 INTS5 Integrator complex subunit 5 yes yes 2 0.028622 40.268 By MS/MS 1 1.1789 1.267 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1789 1.267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3129200 1050600 2078600 0 0 0 0 0 0 3129200 1050600 2078600 0 0 0 0 0 0 0 0 0 12609 3166 13117 63947 64245 64245 1 GVFEAIVDQSPFVPEETMEEQK AAKTKDHTLVQTIARGVFEAIVDQSPFVPE DQSPFVPEETMEEQKTKVGDGDLSAEEIPE R G V Q K T 1 0 0 1 0 2 5 1 0 1 0 1 1 2 2 1 1 0 0 3 0 0 22 0 2508.173 Q14684 Q14684 215 236 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.059055 7.4461 By matching By MS/MS 2 1 0.78264 0.80286 23.584 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77254 0.76174 33.076 2 0 Median NaN NaN NaN 0 0 Median 0.78264 0.80286 NaN 1 0 Median NaN NaN NaN 0 0 Median 1845500 1007400 838140 0 0 0 0 0 0 818290 365280 453010 0 0 0 1027200 642080 385140 0 0 0 12610 2890 13118 63948;63949;63950 64246 64246 1 GVFFLNR MRRARTRANPYEMIRGVFFLNRAAMKMANM ANPYEMIRGVFFLNRAAMKMANMDFVFDRM R G V N R A 0 1 1 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 1 0 0 7 0 851.46537 Q8N1G2 Q8N1G2 229 235 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 0.014239 74.832 By matching By MS/MS By matching 1 1 1 1.2265 1.1269 5.2577 3 Median NaN NaN NaN 0 0 Median 1.2265 1.0805 NaN 1 0 Median 1.0503 1.1269 NaN 1 0 Median 1.4392 1.1995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4384300 1953500 2430800 0 0 0 1397800 494410 903400 2781400 1374100 1407400 205050 85000 120050 0 0 0 0 0 0 12611 3358 13119 63951;63952;63953 64247;64248 64248 2 GVFKPWEER ERLQCLNESREGSGRGVFKPWEERTDRSKF REGSGRGVFKPWEERTDRSKFVESDADEEL R G V E R T 0 1 0 0 0 0 2 1 0 0 0 1 0 1 1 0 0 1 0 1 0 0 9 1 1146.5822 Q9GZP4 Q9GZP4 53 61 PITHD1 PITH domain-containing protein 1 yes yes 2 0.023642 58.981 By MS/MS By matching By matching 1 1 1 1.0643 1.1113 98.477 3 Plateau 1.0643 1.1113 NaN 1 0 Median 1.0906 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21286 0.19282 NaN 1 0 Median 22074000 10430000 11644000 14004000 6458200 7545500 7359800 3395500 3964400 0 0 0 0 0 0 0 0 0 710520 576240 134290 12612 3910 13120 63954;63955;63956 64249;64250 64249 2 GVFNVQMEPK SQAMAVIKEKIEEKRGVFNVQMEPKVVTDT IEEKRGVFNVQMEPKVVTDTDETELARQME R G V P K V 0 0 1 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 2 0 0 10 0 1147.5696 P05198 P05198 267 276 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00026389 130.56 By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 1.0927 0.92194 11.282 8 Median 0.97674 0.88441 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1578 1.1137 0.88146 2 1 Median 1.0927 0.92194 3.3659 4 0 Median NaN NaN NaN 0 0 Median 0.99557 0.81271 NaN 1 0 Median 141630000 68872000 72761000 64895000 32089000 32806000 0 0 0 35923000 17109000 18815000 37294000 17954000 19340000 0 0 0 3519500 1719700 1799800 12613 1862 13121;13122 63957;63958;63959;63960;63961;63962;63963;63964 64251;64252;64253;64254;64255;64256;64257;64258;64259;64260;64261;64262 64260 618 12 GVFVQSVLPYFVATK VDFFSQCLHEEYRSKGVFVQSVLPYFVATK GVFVQSVLPYFVATKLAKIRKPTLDKPSPE K G V T K L 1 0 0 0 0 1 0 1 0 0 1 1 0 2 1 1 1 0 1 4 0 0 15 0 1653.913 Q53GQ0;A0A1B0GV93 Q53GQ0 224 238 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 1.2605E-09 107.85 By MS/MS 1 1.0098 0.91475 NaN 1 Median 1.0098 0.91475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55128000 25957000 29171000 55128000 25957000 29171000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12614 3030 13123 63965 64263 64263 1 GVGAAATAVTQALNELLQHVK VSASQAATEDGQLLRGVGAAATAVTQALNE TAVTQALNELLQHVKAHATGAGPAGRYDQA R G V V K A 5 0 1 0 0 2 1 2 1 0 3 1 0 0 0 0 2 0 0 3 0 0 21 0 2090.1484 Q9Y490 Q9Y490 766 786 TLN1 Talin-1 yes yes 3 5.3139E-23 112.56 By matching By MS/MS 2 1 1.2085 1.0695 18.696 3 Median 1.1859 1.1588 25.617 2 0 Median 1.2085 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12950000 5594600 7355300 1672800 783150 889630 11277000 4811500 6465600 0 0 0 0 0 0 0 0 0 0 0 0 12615 4441 13124 63966;63967;63968 64264 64264 1 GVGADPEAR EPPSPGMERKRSRRRGVGADPEARAEAGEQ KRSRRRGVGADPEARAEAGEQPGTAERALL R G V A R A 2 1 0 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 9 0 870.41954 P56182 P56182 395 403 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.06063 28.174 By MS/MS 2 1.0381 1.0734 7.1924 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0381 1.0734 7.1924 2 0 Median NaN NaN NaN 0 0 Median 2002800 1051800 951020 0 0 0 0 0 0 0 0 0 0 0 0 2002800 1051800 951020 0 0 0 12616 2507 13125 63969;63970 64265 64265 1 GVGAEPLLPWNR WRGPPPLFQQQRFDRGVGAEPLLPWNRMLQ FDRGVGAEPLLPWNRMLQTQNAAFQPNQYQ R G V N R M 1 1 1 0 0 0 1 2 0 0 2 0 0 0 2 0 0 1 0 1 0 0 12 0 1307.6986 Q9H0D6 Q9H0D6 884 895 XRN2 5-3 exoribonuclease 2 yes yes 2 9.7713E-14 128.69 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 4 1 0.87882 0.9219 18.458 7 Median NaN NaN NaN 0 0 Median 0.67764 0.6533 NaN 1 0 Median 0.91318 0.96257 6.1047 2 0 Median NaN NaN NaN 0 0 Median 0.83589 0.86565 19.073 3 0 Median 1.234 1.0057 NaN 1 0 Median 32830000 16628000 16202000 0 0 0 1736200 1005500 730640 20890000 10861000 10029000 0 0 0 9759400 4558400 5200900 444410 202740 241660 12617 3924 13126 63971;63972;63973;63974;63975;63976;63977;63978;63979 64266;64267;64268;64269;64270;64271 64270 6 GVGAIYIR IDLMSISGHKIYGPKGVGAIYIRRRPRVRV HKIYGPKGVGAIYIRRRPRVRVEALQSGGG K G V I R R 1 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 1 0 0 8 0 847.49159 Q9Y697 Q9Y697 264 271 NFS1 Cysteine desulfurase, mitochondrial yes yes 2 0.0034154 97.596 By MS/MS 1 1.5462 1.3325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5462 1.3325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9746200 3663800 6082400 0 0 0 0 0 0 0 0 0 9746200 3663800 6082400 0 0 0 0 0 0 12618 4484 13127 63980 64272 64272 1 GVGASGSFR SIKRLVTTGVLKQTKGVGASGSFRLAKSDE VLKQTKGVGASGSFRLAKSDEPKKSVAFKK K G V F R L 1 1 0 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 836.41407 P07305 P07305 86 94 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 6.9685E-05 150.17 By matching By MS/MS By MS/MS 1 3 3 0.89239 0.91544 49.265 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86809 0.83883 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89239 0.91544 9.2893 3 0 Median 1.9471 1.5797 83.79 3 1 Median 40730000 20319000 20411000 0 0 0 0 0 0 630360 344020 286340 0 0 0 28367000 15366000 13001000 11732000 4608300 7123500 12619 1884 13128 63981;63982;63983;63984;63985;63986;63987 64273;64274;64275;64276;64277;64278 64275 6 GVGGAPPTVTLLR FWTEYRSGSVYRLERGVGGAPPTVTLLRSE ERGVGGAPPTVTLLRSERPPIFEIRMYDAQ R G V L R S 1 1 0 0 0 0 0 3 0 0 2 0 0 0 2 0 2 0 0 2 0 0 13 0 1236.719 Q07954 Q07954 771 783 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 0.00071633 66.92 By MS/MS By matching 3 1 0.57435 0.56697 54.914 4 Median 0.61441 0.60138 7.4852 3 0 Plateau 1.933 1.6444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19589000 11089000 8499400 16637000 10007000 6629500 2951700 1081800 1869900 0 0 0 0 0 0 0 0 0 0 0 0 12620 2733 13129 63988;63989;63990;63991 64279 64279 1 GVGGAVPGAVLEPVAR AVRTLQRFQSSHRSRGVGGAVPGAVLEPVA VGGAVPGAVLEPVARAPSVRSLSLSLADSG R G V A R A 3 1 0 0 0 0 1 4 0 0 1 0 0 0 2 0 0 0 0 4 0 0 16 0 1447.8147 Q9Y446;E9PKC4;E9PRW6 Q9Y446 262 277 PKP3 Plakophilin-3 yes no 2 0.032896 36.284 By matching By MS/MS By matching 1 2 1 0.63501 0.62112 23.906 4 Median 0.42297 0.42057 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63501 0.67026 13.8 2 0 Median 0.73273 0.63458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8082200 5236600 2845600 1035000 704480 330570 0 0 0 6291700 4125100 2166700 755460 407060 348400 0 0 0 0 0 0 12621 4437 13130 63992;63993;63994;63995 64280 64280 0 GVGIISEGNETVEDIAAR MVTGDHPITAKAIAKGVGIISEGNETVEDI IISEGNETVEDIAARLNIPVSQVNPRDAKA K G V A R L 2 1 1 1 0 0 3 3 0 3 0 0 0 0 0 1 1 0 0 2 0 0 18 0 1828.9167 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1 P05023 630 647 ATP1A1;ATP1A3;ATP1A2 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 2;3 3.7532E-15 162.32 By MS/MS By MS/MS By MS/MS By matching 9 5 3 2 1.1082 1.0399 47.477 19 Median 1.1082 1.0624 24.582 9 0 Median 1.0861 0.914 82.161 5 0 Median 1.1086 1.2027 12.165 3 0 Plateau 1.2274 1.0515 3.2609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 195020000 89954000 105070000 165520000 75627000 89890000 21183000 10048000 11135000 7806400 4055100 3751300 514390 223000 291390 0 0 0 0 0 0 12622 1857 13131 63996;63997;63998;63999;64000;64001;64002;64003;64004;64005;64006;64007;64008;64009;64010;64011;64012;64013;64014 64281;64282;64283;64284;64285;64286;64287;64288;64289;64290;64291;64292;64293;64294;64295;64296;64297;64298;64299;64300 64282 20 GVGISVLEMSHR HSVLLEIQKELLDYKGVGISVLEMSHRSSD DYKGVGISVLEMSHRSSDFAKIINNTENLV K G V H R S 0 1 0 0 0 0 1 2 1 1 1 0 1 0 0 2 0 0 0 2 0 0 12 0 1283.6656 Q9Y617 Q9Y617 34 45 PSAT1 Phosphoserine aminotransferase yes yes 2;3 1.4867E-06 144.77 By MS/MS By MS/MS By matching 2 2 2 1.0783 1.0109 28.752 6 Median 1.0109 1.0109 16.972 2 0 Median 0.94561 0.81615 10.332 2 0 Median 1.4751 1.491 2.3296 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52696000 23456000 29240000 46708000 20796000 25912000 3467500 1610300 1857300 2520000 1049800 1470200 0 0 0 0 0 0 0 0 0 12623 4476 13132 64015;64016;64017;64018;64019;64020 64301;64302;64303;64304;64305 64304 5 GVGQADWTPDLGLR WSGVEAGEFLKSRERGVGQADWTPDLGLRN RGVGQADWTPDLGLRNMAPGAVCSPGESKE R G V L R N 1 1 0 2 0 1 0 3 0 0 2 0 0 0 1 0 1 1 0 1 0 0 14 0 1483.7419 Q9C0C2 Q9C0C2 1275 1288 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 0.00020073 72.006 By MS/MS By MS/MS 2 1 0.99539 1.0218 8.7981 2 Median 1.0054 0.96017 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.98546 1.0874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9684300 4443200 5241100 5040600 2435100 2605500 0 0 0 4643700 2008100 2635600 0 0 0 0 0 0 0 0 0 12624 3903 13133 64021;64022;64023 64306;64307;64308 64307 3 GVGTDEACLIEILASR TPVLFDIYEIKEAIKGVGTDEACLIEILAS VGTDEACLIEILASRSNEHIRELNRAYKAE K G V S R S 2 1 0 1 1 0 2 2 0 2 2 0 0 0 0 1 1 0 0 1 0 0 16 0 1702.856 P50995 P50995 287 302 ANXA11 Annexin A11 yes yes 2 8.7485E-10 102.66 By MS/MS 1 1.2776 1.0855 NaN 1 Median NaN NaN NaN 0 0 Median 1.2776 1.0855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4336900 1840900 2496000 0 0 0 4336900 1840900 2496000 0 0 0 0 0 0 0 0 0 0 0 0 12625 2425 13134 64024 64309;64310 64310 2 GVGVALDDPYENYRR PIKGGDVRDKWDQYKGVGVALDDPYENYRR GVGVALDDPYENYRRNKSYSFIARMKARDE K G V R R N 1 2 1 2 0 0 1 2 0 0 1 0 0 0 1 0 0 0 2 2 0 0 15 1 1722.8325 J3QK89;Q8IWX8 J3QK89 896 910 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 3 9.0448E-05 62.891 By MS/MS By MS/MS 1 2 0.78682 0.95694 18.182 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78682 0.95694 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7693 0.83403 23.134 2 1 Median NaN NaN NaN 0 0 Median 26794000 14776000 12018000 0 0 0 0 0 0 13528000 7682000 5845500 0 0 0 13266000 7094400 6172000 0 0 0 12626 1338 13135 64025;64026;64027 64311;64312;64313;64314 64312 4 GVHDGLFTGQIDAVDTLNATYR PLPLVIGTKVTARLRGVHDGLFTGQIDAVD TGQIDAVDTLNATYRVTFDRTGLGTHTIPD R G V Y R V 2 1 1 3 0 1 0 3 1 1 2 0 0 1 0 0 3 0 1 2 0 0 22 0 2362.1553 Q5TKA1;H0Y322;C9J5J4;H7C4T7 Q5TKA1 232 253 LIN9 Protein lin-9 homolog yes no 3 4.0858E-19 90.464 By MS/MS 2 1.123 1.1387 0.30194 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.123 1.1387 0.30194 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16113000 9054600 7058400 0 0 0 0 0 0 16113000 9054600 7058400 0 0 0 0 0 0 0 0 0 12627 3106 13136 64028;64029 64315;64316 64316 2 GVIDMGNSLIER QAFEAELHANADRIRGVIDMGNSLIERGAC RIRGVIDMGNSLIERGACAGSEDAVKARLA R G V E R G 0 1 1 1 0 0 1 2 0 2 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1302.6602 A0A0D9SF54;Q13813 Q13813 1608 1619 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 5.348E-06 121.83 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 5 3 3 1.0136 1.0106 14.501 19 Median 1.3722 1.3231 NaN 1 0 Median 0.88476 0.7561 0.30823 2 0 Median 1.0026 1.0929 6.4874 5 2 Median 1.0907 0.94978 8.478 5 0 Median 1.0052 1.024 13.217 3 1 Plateau 1.0933 0.91468 8.4044 3 0 Median 340220000 167100000 173110000 8926300 3796500 5129800 7781300 4028100 3753200 266850000 134500000 132350000 15237000 7293400 7943100 39279000 16541000 22737000 2146300 945860 1200500 12628 264;2838 13137;13138 64030;64031;64032;64033;64034;64035;64036;64037;64038;64039;64040;64041;64042;64043;64044;64045;64046;64047;64048;64049 64317;64318;64319;64320;64321;64322;64323;64324;64325;64326;64327;64328;64329;64330;64331;64332;64333;64334;64335;64336 64318 123 20 GVIFGQTSSTFTFADLAK TGFQAQDISGQKNGRGVIFGQTSSTFTFAD FGQTSSTFTFADLAKSTSGEGFQFGKKDPN R G V A K S 2 0 0 1 0 1 0 2 0 1 1 1 0 3 0 2 3 0 0 1 0 0 18 0 1888.9571 P49792 P49792 1935 1952 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0036303 29.807 By matching By matching By MS/MS 1 1 2 1.2106 1.2544 12.595 4 Median 1.2114 1.2032 NaN 1 0 Median 1.8135 1.5704 NaN 1 0 Median 1.1428 1.2533 6.0019 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3696300 1736400 1960000 716500 400520 315980 628270 253220 375050 2351600 1082600 1268900 0 0 0 0 0 0 0 0 0 12629 2401 13139 64050;64051;64052;64053 64337;64338 64337 2 GVIFYLR PAVPQAPVQGEDYGKGVIFYLRDKVVVGIV VQGEDYGKGVIFYLRDKVVVGIVLWNIFNR K G V L R D 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 1 0 0 7 0 866.50142 O95831;E9PMA0 O95831 563 569 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.029724 50.12 By MS/MS By matching By matching By matching By matching 1 2 2 1 1 1.7093 1.4783 17.192 7 Median 1.1634 1.1231 NaN 1 0 Median 1.7327 1.5208 4.0124 2 0 Median 1.1934 1.2575 17.193 2 0 Median 1.9638 1.686 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8674 1.6514 NaN 1 0 Median 23415000 9439600 13976000 6187500 2684700 3502700 13409000 5035700 8373400 3431500 1583200 1848300 243070 74298 168770 0 0 0 144020 61575 82450 12630 1797 13140 64054;64055;64056;64057;64058;64059;64060 64339;64340 64339 2 GVIINTASVAAFEGQVGQAAYSASK AGEMGQNEPDQGGQRGVIINTASVAAFEGQ AFEGQVGQAAYSASKGGIVGMTLPIARDLA R G V S K G 6 0 1 0 0 2 1 3 0 2 0 1 0 1 0 3 1 0 1 3 0 0 25 0 2438.2442 Q99714 Q99714 148 172 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2;3 8.2638E-05 34.612 By MS/MS By MS/MS By matching 4 1 1 1.1732 1.101 9.8687 6 Median 1.094 1.0346 6.2441 4 0 Median 1.444 1.2263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4798 1.245 NaN 1 0 Median 14007000 6010300 7996800 10881000 4814200 6067200 1817200 731240 1086000 0 0 0 0 0 0 0 0 0 1308400 464840 843610 12631 3764 13141 64061;64062;64063;64064;64065;64066 64341;64342;64343;64344 64342 4 GVINIIPGSGGIAGQR ALKFAELSVKAGFPKGVINIIPGSGGIAGQ VINIIPGSGGIAGQRLSEHPDIRKLGFTGS K G V Q R L 1 1 1 0 0 1 0 5 0 4 0 0 0 0 1 1 0 0 0 1 0 0 16 0 1507.8471 A0A494C1M4;Q3SY69 A0A494C1M4 651 666 ALDH1L2 Mitochondrial 10-formyltetrahydrofolate dehydrogenase yes no 2 0.0017019 38.021 By MS/MS 1 0.5439 0.54797 NaN 1 Median 0.5439 0.54797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1112000 670090 441930 1112000 670090 441930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12632 471 13142 64067 64345 64345 1 GVIPMNAK AQAMFDHIPVGVGSKGVIPMNAKDLEEALE PVGVGSKGVIPMNAKDLEEALEMGVDWSLR K G V A K D 1 0 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 1 0 0 8 0 828.45276 Q9Y3I0 Q9Y3I0 159 166 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0082725 63.563 By MS/MS 1 1.1068 0.95009 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1068 0.95009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603400 1199200 1404300 0 0 0 0 0 0 0 0 0 2603400 1199200 1404300 0 0 0 0 0 0 12633 4430 13143 64068 64346;64347 64347 2 GVIPPEVGNVAVR CLEDAWHGGSSLLVRGVIPPEVGNVAVRLF VRGVIPPEVGNVAVRLFSLQAPVPPKIYLS R G V V R L 1 1 1 0 0 0 1 2 0 1 0 0 0 0 2 0 0 0 0 4 0 0 13 0 1305.7405 Q8NFI3 Q8NFI3 469 481 ENGASE Cytosolic endo-beta-N-acetylglucosaminidase yes yes 2 0.0036405 43.512 By MS/MS 1 0.73999 0.75751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73999 0.75751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7390800 4044200 3346600 0 0 0 0 0 0 7390800 4044200 3346600 0 0 0 0 0 0 0 0 0 12634 3438 13144 64069 64348;64349 64349 2 GVIQAIQK ALALLSVTISFRIYKGVIQAIQKSDEGHPF ISFRIYKGVIQAIQKSDEGHPFRAYLESEV K G V Q K S 1 0 0 0 0 2 0 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 8 0 855.5178 F8W914;Q9NQC3;H7C106;A0A0U1RQR6 F8W914 212 219 RTN4 Reticulon;Reticulon-4 yes no 2 0.0048035 79.454 By MS/MS By MS/MS By matching 2 4 1 1.2333 1.1213 14.582 7 Median 1.0518 1.0131 31.513 2 0 Median 1.2844 1.233 7.0887 4 0 Linear 1.0971 1.1213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30207000 12930000 17277000 5704600 2344000 3360600 23117000 9899300 13218000 1385400 686370 699040 0 0 0 0 0 0 0 0 0 12635 1087 13145 64070;64071;64072;64073;64074;64075;64076 64350;64351;64352;64353;64354;64355 64355 6 GVIQVYDLGQDGQGMSR AIDNSRNILYTRSEKGVIQVYDLGQDGQGM IQVYDLGQDGQGMSRVASVSQNAIVSAAGN K G V S R V 0 1 0 2 0 3 0 4 0 1 1 0 1 0 0 1 0 0 1 2 0 0 17 0 1821.8679 O75694;E9PF10 O75694 298 314 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 3.919E-12 146.07 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 3 1 1 1.2472 1.2033 8.3917 7 Median 1.2472 1.2033 NaN 1 0 Median 1.4482 1.2604 NaN 1 0 Median 1.1336 1.2458 12.092 3 0 Plateau 1.4521 1.2364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4126 1.1733 NaN 1 0 Median 59105000 23635000 35470000 8161200 3661900 4499300 1225600 509380 716240 47190000 18434000 28756000 2206100 897340 1308800 0 0 0 321830 132610 189210 12636 1692 13146 64077;64078;64079;64080;64081;64082;64083 64356;64357;64358;64359;64360;64361 64359 6 GVISTPVIR LQVVSVGGPARGRPRGVISTPVIRTFGRGG ARGRPRGVISTPVIRTFGRGGRYYGRGYKN R G V I R T 0 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 2 0 0 9 0 940.57057 Q9NZB2;A0A0C4DG79;A0A494C0Y9 Q9NZB2 987 995 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.0036742 63.48 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1 0.86068 0.82674 14.749 6 Median 0.82897 0.80107 NaN 1 0 Median 0.89361 0.75777 NaN 1 0 Median 0.75265 0.85323 NaN 1 0 Median 1.2128 1.0334 NaN 1 1 Median 0.71118 0.78702 NaN 1 0 Median 1.3155 1.0707 NaN 1 1 Median 19158000 10443000 8715100 6309500 3273200 3036300 4000300 2280400 1719900 3784700 2524300 1260400 1463100 646050 817040 2414000 1290500 1123500 1186400 428410 758020 12637 4186 13147 64084;64085;64086;64087;64088;64089 64362;64363;64364;64365 64362 4 GVITMNEEYETR LRSLTRQLVQDENVRGVITMNEEYETRFLC NVRGVITMNEEYETRFLCNSSQEWKRLGVE R G V T R F 0 1 1 0 0 0 3 1 0 1 0 0 1 0 0 0 2 0 1 1 0 0 12 0 1440.6555 Q8WUK0 Q8WUK0 67 78 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes yes 2 1.963E-07 166.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 1 1 1.1084 1.0662 17.838 10 Median 1.0675 1.0109 13.213 3 1 Plateau 1.735 1.4401 NaN 1 1 Median 1.003 0.96003 10.593 2 0 Median 1.5351 1.2686 3.786 2 1 Median 1.1319 1.1974 NaN 1 0 Median 1.3958 1.0986 NaN 1 0 Median 36426000 17268000 19158000 15864000 7257100 8607300 2226400 736470 1489900 13588000 7279100 6309300 2371600 846530 1525100 2249100 1080900 1168200 125940 67989 57955 12638 3491 13148;13149 64090;64091;64092;64093;64094;64095;64096;64097;64098;64099 64366;64367;64368;64369;64370;64371;64372;64373;64374;64375 64372 1743 10 GVITRPDLPSK CHEKYDKQIKFTLFKGVITRPDLPSKKQGP TLFKGVITRPDLPSKKQGPWATYAAIEWDG K G V S K K 0 1 0 1 0 0 0 1 0 1 1 1 0 0 2 1 1 0 0 1 0 0 11 1 1181.6768 A6NHR9;J3KTL8 A6NHR9 581 591 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2;3 0.00065442 87.298 By MS/MS 2 0.69678 0.83301 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69678 0.83301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6377000 1972800 4404200 0 0 0 0 0 0 6377000 1972800 4404200 0 0 0 0 0 0 0 0 0 12639 518 13150 64100;64101 64376;64377;64378 64376 3 GVITRPDLPSKK CHEKYDKQIKFTLFKGVITRPDLPSKKQGP LFKGVITRPDLPSKKQGPWATYAAIEWDGK K G V K K Q 0 1 0 1 0 0 0 1 0 1 1 2 0 0 2 1 1 0 0 1 0 0 12 2 1309.7718 A6NHR9;J3KTL8 A6NHR9 581 592 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0051117 34.768 By MS/MS By MS/MS By MS/MS 1 1 1 0.87213 0.93202 9.7148 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61311 0.81003 NaN 1 0 Median 0.87213 0.97616 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97101 0.93202 NaN 1 0 Median 17009000 9569800 7439000 0 0 0 0 0 0 11607000 7139700 4467700 3406400 1675400 1731000 0 0 0 1995000 754730 1240300 12640 518 13151 64102;64103;64104 64379;64380;64381;64382;64383 64379 5 GVIVDKDFSHPQMPK EGKVGGRLEDTKLIKGVIVDKDFSHPQMPK GVIVDKDFSHPQMPKKVEDAKIAILTCPFE K G V P K K 0 0 0 2 0 1 0 1 1 1 0 2 1 1 2 1 0 0 0 2 0 0 15 1 1696.8607 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 227 241 CCT5 T-complex protein 1 subunit epsilon yes no 2;3;4 0.00010325 51.546 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.88956 0.85338 23.091 8 Median 0.81303 0.75066 8.4522 3 0 Median 0.8579 0.80124 7.3897 2 0 Median 0.91381 0.95562 6.0068 2 0 Median NaN NaN NaN 0 0 Median 1.4009 1.4945 NaN 1 0 Median NaN NaN NaN 0 0 Median 203920000 107180000 96738000 166890000 88072000 78818000 20287000 10584000 9702700 14882000 7811100 7070900 0 0 0 1863100 716190 1146900 0 0 0 12641 2364 13152 64105;64106;64107;64108;64109;64110;64111;64112 64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397;64398;64399;64400 64393 17 GVIVVEVEDREKK GGVMAVGARHSFDKKGVIVVEVEDREKKAV KKGVIVVEVEDREKKAVNLERALEMAIEAG K G V K K A 0 1 0 1 0 0 3 1 0 1 0 2 0 0 0 0 0 0 0 4 0 0 13 2 1498.8355 Q9BSH4 Q9BSH4 187 199 TACO1 Translational activator of cytochrome c oxidase 1 yes yes 3 0.022792 41.401 By MS/MS 1 1.7103 1.4829 NaN 1 Median NaN NaN NaN 0 0 Median 1.7103 1.4829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1180800 437750 743020 0 0 0 1180800 437750 743020 0 0 0 0 0 0 0 0 0 0 0 0 12642 3813 13153 64113 64401 64401 0 GVKIDKTDYMVGSYGPR EIVSGMKYIQHTYRKGVKIDKTDYMVGSYG KIDKTDYMVGSYGPRAEEYEFLTPVEEAPK K G V P R A 0 1 0 2 0 0 0 3 0 1 0 2 1 0 1 1 1 0 2 2 0 0 17 2 1884.9404 J3KTF8;J3QQX2;P52565 J3KTF8 136 152 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 3 7.2277E-06 75.463 By MS/MS By MS/MS 1 1 0.87027 0.83619 29.621 2 Median 0.96829 1.031 NaN 1 1 Median 0.78218 0.67817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16952000 7926100 9026000 12798000 5755800 7042400 4153900 2170300 1983600 0 0 0 0 0 0 0 0 0 0 0 0 12643 1336 13154 64114;64115 64402;64403 64403 2 GVLANALAGR TPEITVSIIKELNRRGVLANALAGRDEKEI ELNRRGVLANALAGRDEKEISHVLNFLIRN R G V G R D 3 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 940.54541 Q8TED0;H0Y8P4 Q8TED0 404 413 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.029962 67.032 By MS/MS 1 1.6226 1.4025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6226 1.4025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 994150 387330 606820 0 0 0 0 0 0 0 0 0 994150 387330 606820 0 0 0 0 0 0 12644 1163 13155 64116 64404 64404 0 GVLDLSYGPGPSLRPQNVTSWR TLKAAGGQDKAGKEKGVLDLSYGPGPSLRP GPGPSLRPQNVTSWREGGGRHIISATSLST K G V W R E 0 2 1 1 0 1 0 3 0 0 3 0 0 0 3 3 1 1 1 2 0 0 22 1 2398.2393 Q5JSZ5;A0A1W2PQP5 Q5JSZ5 189 210 PRRC2B Protein PRRC2B yes no 3 0.010807 20.439 By MS/MS By matching 1 1 0.75856 0.78829 4.815 2 Median 0.71246 0.76191 NaN 1 0 Median 0.80765 0.81559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3704500 2275500 1429000 3202600 1977200 1225500 501860 298340 203530 0 0 0 0 0 0 0 0 0 0 0 0 12645 3051 13156 64117;64118 64405;64406 64405 2 GVLEQEEKEEK DTEYKKTDICIPQTKGVLEQEEKEEKAALE PQTKGVLEQEEKEEKAALEKPMDLEEEKKQ K G V E K A 0 0 0 0 0 1 5 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 11 1 1316.646 O14967 O14967 517 527 CLGN Calmegin yes yes 2 0.005026 82.287 By MS/MS 1 1.0433 1.0088 NaN 1 Median NaN NaN NaN 0 0 Median 1.0433 1.0088 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579200 851610 727590 0 0 0 1579200 851610 727590 0 0 0 0 0 0 0 0 0 0 0 0 12646 1507 13157 64119 64407 64407 1 GVLEQVEAYQAEAR MNNLPCAMHQIGDVKGVLEQVEAYQAEARE KGVLEQVEAYQAEAREALASLPSSPGLLQS K G V A R E 3 1 0 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 14 0 1561.7736 P41229 P41229 875 888 KDM5C Lysine-specific demethylase 5C yes yes 2 8.2179E-05 83.397 By MS/MS By MS/MS 1 1 0.82042 0.85263 5.4731 2 Median 0.90971 0.88627 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73988 0.82026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6902700 3757500 3145100 3546700 1739300 1807400 0 0 0 3356000 2018200 1337800 0 0 0 0 0 0 0 0 0 12647 2299 13158 64120;64121 64408;64409;64410 64409 3 GVLETFSGTETNK YEDQTKPVLEYYQKKGVLETFSGTETNKIW KKGVLETFSGTETNKIWPYVYAFLQTKVPQ K G V N K I 0 0 1 0 0 0 2 2 0 0 1 1 0 1 0 1 3 0 0 1 0 0 13 0 1381.6725 Q9UIJ7 Q9UIJ7 191 203 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 4.1633E-15 182.64 By MS/MS By matching By matching 1 1 1 0.92454 0.8561 13.417 3 Median 0.92454 0.8561 NaN 1 0 Median 1.2497 1.0565 NaN 1 0 Median 0.86512 0.8232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31029000 16023000 15007000 24771000 12581000 12190000 2736800 1207900 1528900 3521300 2233800 1287400 0 0 0 0 0 0 0 0 0 12648 4291 13159 64122;64123;64124 64411;64412 64412 2 GVLFASGQNLAR SAKLYGSGDQEAWQKGVLFASGQNLARQLM WQKGVLFASGQNLARQLMETPANEMTPTRF K G V A R Q 2 1 1 0 0 1 0 2 0 0 2 0 0 1 0 1 0 0 0 1 0 0 12 0 1231.6673 P28838;H0Y9Q1 P28838 189 200 LAP3 Cytosol aminopeptidase yes no 2 0.00044164 94.692 By MS/MS 1 1.1197 1.055 NaN 1 Median 1.1197 1.055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26539000 12552000 13987000 26539000 12552000 13987000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12649 2167 13160 64125 64413 64413 1 GVLFFSTPR TGAQGLREEVHTMLRGVLFFSTPRTFQEMI VHTMLRGVLFFSTPRTFQEMIQRLYGCFLR R G V P R T 0 1 0 0 0 0 0 1 0 0 1 0 0 2 1 1 1 0 0 1 0 0 9 0 1022.5549 Q9UJX6 Q9UJX6 159 167 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2 0.045553 45.335 By MS/MS 1 1.0441 1.1207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0441 1.1207 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2862100 1520800 1341300 0 0 0 0 0 0 2862100 1520800 1341300 0 0 0 0 0 0 0 0 0 12650 4303 13161 64126 64414 64414 1 GVLFGVPGAFTPGCSK PGNKVNLAELFKGKKGVLFGVPGAFTPGCS VLFGVPGAFTPGCSKTHLPGFVEQAEALKA K G V S K T 1 0 0 0 1 0 0 4 0 0 1 1 0 2 2 1 1 0 0 2 0 0 16 0 1592.8021 P30044 P30044 87 102 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 0.046755 22.533 By matching By MS/MS By MS/MS 1 1 1 1.4964 1.2986 61.483 3 Median 2.428 2.2946 NaN 1 0 Median 1.4964 1.2986 NaN 1 0 Median 0.67921 0.67167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11011000 4507700 6503200 7161900 2465400 4696500 1401900 551380 850480 2447100 1490900 956210 0 0 0 0 0 0 0 0 0 12651 2181 13162 64127;64128;64129 64415;64416;64417 64415 3 GVLFHSGGK GMCLMTLVGHDNWVRGVLFHSGGKFILSCA HDNWVRGVLFHSGGKFILSCADDKTLRVWD R G V G K F 0 0 0 0 0 0 0 3 1 0 1 1 0 1 0 1 0 0 0 1 0 0 9 0 900.48175 P43034;I3L3N5 P43034 343 351 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 2 0.041822 45.972 By MS/MS 1 1.265 1.0842 NaN 1 Median NaN NaN NaN 0 0 Median 1.265 1.0842 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1490300 566360 923960 0 0 0 1490300 566360 923960 0 0 0 0 0 0 0 0 0 0 0 0 12652 2321 13163 64130 64418 64418 1 GVLHQFSGTETNK YKDVAKPVIELYKSRGVLHQFSGTETNKIW SRGVLHQFSGTETNKIWPYVYTLFSNKITP R G V N K I 0 0 1 0 0 1 1 2 1 0 1 1 0 1 0 1 2 0 0 1 0 0 13 0 1416.6997 P27144;D3DQ64 P27144 189 201 AK4 Adenylate kinase 4, mitochondrial yes no 2;3 0.0037043 43.282 By MS/MS By MS/MS 2 2 1.3032 1.1702 19.229 4 Median 1.0527 0.98078 3.9651 2 0 Median 1.5919 1.365 0.77315 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24428000 10844000 13584000 17708000 8280800 9427300 6720400 2563500 4156900 0 0 0 0 0 0 0 0 0 0 0 0 12653 2151 13164 64131;64132;64133;64134 64419;64420;64421 64420 3 GVLHTFSPSPK QASSQLSRGSATTPRGVLHTFSPSPKLQNS TTPRGVLHTFSPSPKLQNSASATALVSRTG R G V P K L 0 0 0 0 0 0 0 1 1 0 1 1 0 1 2 2 1 0 0 1 0 0 11 0 1168.6241 Q86YP4 Q86YP4 540 550 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00034395 71.614 By matching By matching By MS/MS By MS/MS By matching 2 1 1 2 1 0.87661 0.93165 49.84 7 Median 1.3386 1.3441 65.674 2 0 Median 1.4287 1.263 NaN 1 0 Median 0.87661 0.93165 NaN 1 0 Median 0.9129 0.8008 26.464 2 0 Median NaN NaN NaN 0 0 Median 0.52127 0.43441 NaN 1 0 Median 13340000 5862900 7476800 5273100 1976900 3296200 1130700 498090 632630 4060300 2050200 2010100 2487700 1120600 1367100 0 0 0 387880 217090 170790 12654 3309 13165 64135;64136;64137;64138;64139;64140;64141 64422;64423;64424;64425 64423 4 GVLKVFLENVIR GGVKRISGLIYEETRGVLKVFLENVIRDAV ETRGVLKVFLENVIRDAVTYTEHAKRKTVT R G V I R D 0 1 1 0 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 3 0 0 12 1 1385.8395 P62805 P62805 57 68 HIST1H4A Histone H4 yes yes 2 8.782E-09 173.37 By matching By MS/MS 1 4 1.2439 1.0503 18.305 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93218 1.0503 NaN 1 0 Median 1.3373 1.0658 20.988 4 0 Median 147190000 64319000 82875000 0 0 0 0 0 0 0 0 0 0 0 0 4153700 1974500 2179300 143040000 62345000 80695000 12655 2597 13166 64142;64143;64144;64145;64146 64426;64427;64428 64427 3 GVLLEIEDLQVNQFK KKISLKYTAARLHEKGVLLEIEDLQVNQFK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF K G V F K N 0 0 1 1 0 2 2 1 0 1 3 1 0 1 0 0 0 0 0 2 0 0 15 0 1743.9407 P46940;H0YLE8 P46940 1572 1586 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.672E-10 94.297 By MS/MS By MS/MS By matching 2 3 1 1.1398 1.0947 23.837 5 Median 0.86729 0.85536 34.888 2 0 Median 1.2325 1.1099 13.049 2 0 Median 1.0507 1.1443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17844000 8594800 9249500 5490500 2642500 2848000 12144000 5852300 6291800 209720 100020 109710 0 0 0 0 0 0 0 0 0 12656 2350 13167 64147;64148;64149;64150;64151;64152 64429;64430;64431 64431 3 GVLLFGPPGTGK LHPERFVNLGIEPPKGVLLFGPPGTGKTLC PPKGVLLFGPPGTGKTLCARAVANRTDACF K G V G K T 0 0 0 0 0 0 0 4 0 0 2 1 0 1 2 0 1 0 0 1 0 0 12 0 1141.6495 P35998 P35998 211 222 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.0028628 47.603 By MS/MS 1 0.8504 0.79959 NaN 1 Median 0.8504 0.79959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6075700 3206200 2869400 6075700 3206200 2869400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12657 2253 13168 64153 64432;64433;64434 64433 3 GVLLTDGSEK MSALQRVLYRHMQAKGVLLTDGSEKDKKGK HMQAKGVLLTDGSEKDKKGKGGTKTLMNTI K G V E K D 0 0 0 1 0 0 1 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1017.5342 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 1015 1024 SMARCA4 Transcription activator BRG1 yes no 2 0.00039551 110.41 By MS/MS By MS/MS 1 1 1.3009 1.3022 9.382 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0992 1.2187 NaN 1 0 Median 1.5395 1.3916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10857000 5410100 5446700 0 0 0 0 0 0 8025900 4171200 3854700 2831000 1238900 1592000 0 0 0 0 0 0 12658 366 13169 64154;64155 64435;64436;64437 64436 3 GVLLTDGSEKDKK MSALQRVLYRHMQAKGVLLTDGSEKDKKGK AKGVLLTDGSEKDKKGKGGTKTLMNTIMQL K G V K K G 0 0 0 2 0 0 1 2 0 0 2 3 0 0 0 1 1 0 0 1 0 0 13 2 1388.7511 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 1015 1027 SMARCA4 Transcription activator BRG1 yes no 2;3 0.00028808 63.091 By MS/MS 2 0.91852 1.0642 5.0126 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91852 1.0642 5.0126 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8419900 4341000 4078900 0 0 0 0 0 0 8419900 4341000 4078900 0 0 0 0 0 0 0 0 0 12659 366 13170 64156;64157 64438;64439;64440 64439 3 GVLLYGPPGTGK KHPELFEALGIAQPKGVLLYGPPGTGKTLL QPKGVLLYGPPGTGKTLLARAVAHHTDCTF K G V G K T 0 0 0 0 0 0 0 4 0 0 2 1 0 0 2 0 1 0 1 1 0 0 12 0 1157.6445 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRW1;J3QRR3;Q8NB90 P62195 185 196 PSMC5;SPATA5 26S protease regulatory subunit 8;Spermatogenesis-associated protein 5 no no 2 0.0019044 79.148 By MS/MS By MS/MS 2 1 1.1447 0.97199 23.956 3 Plateau 0.73047 0.67339 15.803 2 2 Median 1.148 0.97199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70890000 38537000 32353000 54396000 30576000 23820000 16494000 7960900 8533600 0 0 0 0 0 0 0 0 0 0 0 0 12660 2572;3401 13171 64158;64159;64160 64441;64442;64443 64441 3 GVLMAGLYPNLIQVR SAQCNEYSEEEELVKGVLMAGLYPNLIQVR GVLMAGLYPNLIQVRQGKVTRQGKFKPNSV K G V V R Q 1 1 1 0 0 1 0 2 0 1 3 0 1 0 1 0 0 0 1 2 0 0 15 0 1642.9229 H7BXY3;Q7L2E3 H7BXY3 989 1003 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00036681 59.757 By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1.009 1.1347 17.158 8 Linear 1.0721 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90946 0.9974 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0911 1.1616 22.84 3 0 Plateau 1.1404 0.92591 16.464 3 0 Plateau 10180000 5215000 4964900 3671400 1979800 1691600 0 0 0 2568500 1315000 1253500 0 0 0 2278400 1126800 1151600 1661600 793400 868210 12661 1244 13172 64161;64162;64163;64164;64165;64166;64167;64168 64444;64445;64446;64447 64447 4 GVLMYGPPGTGK NHKEKFENLGIQPPKGVLMYGPPGTGKTLL PPKGVLMYGPPGTGKTLLARACAAQTKATF K G V G K T 0 0 0 0 0 0 0 4 0 0 1 1 1 0 2 0 1 0 1 1 0 0 12 0 1175.6009 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PN50 R4GNH3 206 217 PSMC3 26S protease regulatory subunit 6A yes no 2 9.5523E-05 91.867 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0802 0.96586 16.011 3 Median 0.95129 0.88074 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.217 1.2029 NaN 1 1 Median 1.0802 0.96586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20921000 12190000 8731000 13446000 8376900 5069100 0 0 0 3866400 1948200 1918200 3608600 1864900 1743700 0 0 0 0 0 0 12662 2050 13173 64169;64170;64171;64172 64448;64449;64450 64448 3 GVLNSPVK ETDTLINYMAKFAYRGVLNSPVKAVRDTLI MAKFAYRGVLNSPVKAVRDTLITQCAQILA R G V V K A 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 8 0 812.4756 P53992;G5EA31 P53992 858 865 SEC24C Protein transport protein Sec24C yes no 2 0.040829 36.701 By MS/MS 1 0.97398 0.85217 NaN 1 Median NaN NaN NaN 0 0 Median 0.97398 0.85217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2524000 1203200 1320800 0 0 0 2524000 1203200 1320800 0 0 0 0 0 0 0 0 0 0 0 0 12663 1134 13174 64173 64451 64451 1 GVLNVHPAASASKPSADQIR GTHEKQEMKKKKVEKGVLNVHPAASASKPS HPAASASKPSADQIRQSVRHSLKDILMKRL K G V I R Q 4 1 1 1 0 1 0 1 1 1 1 1 0 0 2 3 0 0 0 2 0 0 20 1 2017.0705 Q92576;E7ER40;E7EVH3 Q92576 909 928 PHF3 PHD finger protein 3 yes no 3;4 1.1406E-10 90.972 By MS/MS By MS/MS 4 3 0.71603 0.81102 11.731 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63749 0.74469 5.2409 4 0 Median 0.89093 0.86009 10.004 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65005000 38424000 26580000 0 0 0 0 0 0 55884000 33499000 22385000 9120900 4925300 4195600 0 0 0 0 0 0 12664 3539 13175 64174;64175;64176;64177;64178;64179;64180 64452;64453;64454;64455;64456;64457;64458;64459 64452 8 GVLRPGTALVLLEAQAATGFVIDPVR PGRQEKMSIYQAMWKGVLRPGTALVLLEAQ LEAQAATGFVIDPVRNLRLSVEEAVAAGVV K G V V R N 4 2 0 1 0 1 1 3 0 1 4 0 0 1 2 0 2 0 0 4 0 0 26 1 2662.517 P58107;A0A075B730 P58107 2252 2277 EPPK1 Epiplakin yes no 3 0.02985 13.092 By MS/MS 2 1.0464 1.018 16.058 2 Median NaN NaN NaN 0 0 Median 1.0464 1.018 16.058 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3998700 1931700 2067000 0 0 0 3998700 1931700 2067000 0 0 0 0 0 0 0 0 0 0 0 0 12665 2520 13176 64181;64182 64460 64460 1 GVLTQFR FPLFPLSKGFIKSIRGVLTQFRAALLEAGM KGFIKSIRGVLTQFRAALLEAGMPECTEDK R G V F R A 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 819.46029 Q9C0C9;K7ES11 Q9C0C9 1271 1277 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.010143 91.584 By MS/MS By MS/MS 1 1 1.6075 1.455 16.793 2 Median 1.6971 1.6384 NaN 1 1 Median 1.5226 1.2921 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7197700 2720800 4476900 4079800 1509200 2570500 3117900 1211500 1906400 0 0 0 0 0 0 0 0 0 0 0 0 12666 3904 13177 64183;64184 64461;64462 64461 2 GVLVVGIGSGTK TLKIGHGGTLDSAARGVLVVGIGSGTKMLT AARGVLVVGIGSGTKMLTSMLSGSKRYTAI R G V T K M 0 0 0 0 0 0 0 4 0 1 1 1 0 0 0 1 1 0 0 3 0 0 12 0 1085.6445 Q8WWH5 Q8WWH5 126 137 TRUB1 Probable tRNA pseudouridine synthase 1 yes yes 2 5.4737E-06 98.943 By MS/MS By MS/MS 1 1 1.1512 1.149 16.639 2 Median 1.0931 1.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2124 1.2925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11533000 5267700 6265400 7267100 3234300 4032800 0 0 0 4266100 2033400 2232700 0 0 0 0 0 0 0 0 0 12667 3508 13178 64185;64186 64463;64464;64465 64463 2 GVMGGQSAGPQHTEAETIQK ______________________________ QSAGPQHTEAETIQKLCDRVASSTLLDDRR R G V Q K L 2 0 0 0 0 3 2 4 1 1 0 1 1 0 1 1 2 0 0 1 0 0 20 0 2024.9586 O60763 O60763 6 25 USO1 General vesicular transport factor p115 yes yes 3 3.2069E-11 75.533 By MS/MS By MS/MS 1 2 1.1733 0.99059 13.963 3 Plateau 0.78737 0.76479 NaN 1 1 Median 1.1509 0.97182 2.7048 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39387000 17535000 21851000 7223800 3863900 3359800 32163000 13671000 18492000 0 0 0 0 0 0 0 0 0 0 0 0 12668 1630 13179 64187;64188;64189 64466;64467;64468 64468 3 GVMISHSNIIAGITGMAER IAVIMYTSGSTGLPKGVMISHSNIIAGITG SHSNIIAGITGMAERIPELGEEDVYIGYLP K G V E R I 2 1 1 0 0 0 1 3 1 4 0 0 2 0 0 2 1 0 0 1 0 0 19 0 1955.9921 O95573 O95573 296 314 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 3 0.018997 16.487 By MS/MS By MS/MS 2 1 1.0495 1.0573 15.179 3 Median 0.98138 0.98064 10.638 2 0 Median 1.4219 1.2322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6117800 2748300 3369600 3171300 1442000 1729300 2946600 1306300 1640300 0 0 0 0 0 0 0 0 0 0 0 0 12669 1780 13180 64190;64191;64192 64469;64470 64470 2 GVMLAVDAVIAELK FEKISKGANPVEIRRGVMLAVDAVIAELKK RGVMLAVDAVIAELKKQSKPVTTPEEIAQV R G V L K K 3 0 0 1 0 0 1 1 0 1 2 1 1 0 0 0 0 0 0 3 0 0 14 0 1427.8058 P10809;E7ESH4;E7EXB4 P10809 143 156 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0042265 42.336 By MS/MS 2 1.173 1.0348 4.9333 2 Median NaN NaN NaN 0 0 Median 1.173 1.0348 4.9333 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3960500 2440200 1520400 0 0 0 3960500 2440200 1520400 0 0 0 0 0 0 0 0 0 0 0 0 12670 1947 13181 64193;64194 64471 64471 720 1 GVMLAVDAVIAELKK FEKISKGANPVEIRRGVMLAVDAVIAELKK GVMLAVDAVIAELKKQSKPVTTPEEIAQVA R G V K K Q 3 0 0 1 0 0 1 1 0 1 2 2 1 0 0 0 0 0 0 3 0 0 15 1 1555.9008 P10809;E7ESH4;E7EXB4 P10809 143 157 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2;3 3.1295E-09 147.62 By MS/MS By MS/MS By matching By matching 5 17 2 1 1.3013 1.1997 17.171 25 Median 1.2112 1.1411 7.9107 5 0 Median 1.3197 1.2094 17.268 17 1 Median 1.2572 1.3341 34.397 2 0 Median NaN NaN NaN 0 0 Median 1.4445 1.5457 NaN 1 0 Median NaN NaN NaN 0 0 Median 374430000 158410000 216020000 84220000 37514000 46706000 288540000 120570000 167970000 1337600 207520 1130100 0 0 0 330190 118170 212020 0 0 0 12671 1947 13182;13183 64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206;64207;64208;64209;64210;64211;64212;64213;64214;64215;64216;64217;64218;64219 64472;64473;64474;64475;64476;64477;64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488 64477 720 17 GVMSLVNVR ANRFQLQLLRERCEKGVMSLVNVRNCIRFY RERCEKGVMSLVNVRNCIRFYQTAEELNAS K G V V R N 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 3 0 0 9 0 973.53789 Q9P2R3 Q9P2R3 157 165 ANKFY1 Rabankyrin-5 yes yes 2 0.010846 63.48 By MS/MS 1 1.412 1.3767 NaN 1 Median 1.412 1.3767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2999600 1196000 1803600 2999600 1196000 1803600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12672 4229 13184 64220 64489 64489 1 GVMSYVR WPVTLPDPGMSLTDRGVMSYVRHVLSCLGG PGMSLTDRGVMSYVRHVLSCLGGGLALWRA R G V V R H 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 2 0 0 7 0 810.40581 M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653;M0QXC8 M0QYT9 110 116 IRF3 Interferon regulatory factor 3 yes no 2 0.025507 69.432 By MS/MS By MS/MS 1 1 1.079 1.0058 13.37 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0977 1.1055 NaN 1 0 Median 1.0606 0.91507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10826000 4642500 6183400 0 0 0 0 0 0 2936600 1203700 1732900 7889300 3438800 4450500 0 0 0 0 0 0 12673 1420 13185 64221;64222 64490;64491 64491 2 GVNAIVYMIDAADR GGQPRFRSMWERYCRGVNAIVYMIDAADRE RGVNAIVYMIDAADREKIEASRNELHNLLD R G V D R E 3 1 1 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 1 2 0 0 14 0 1506.7501 Q9NVJ2 Q9NVJ2 88 101 ARL8B ADP-ribosylation factor-like protein 8B yes yes 2 0.00037473 72.006 By MS/MS By MS/MS 1 1 1.3666 1.2421 11.834 2 Median 1.1493 1.1424 NaN 1 0 Median 1.6249 1.3505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2730800 1141400 1589400 1342400 583620 758740 1388400 557770 830640 0 0 0 0 0 0 0 0 0 0 0 0 12674 4134 13186 64223;64224 64492;64493;64494;64495 64492 4 GVNLDPLGK LKTRRRDLAQALINRGVNLDPLGKWSKTGL QALINRGVNLDPLGKWSKTGLVVYDSSVPI R G V G K W 0 0 1 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 911.50763 P46087;F5GYR3 P46087 332 340 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.0022552 73.26 By matching By MS/MS By matching By MS/MS By matching 2 1 1 3 3 0.97231 0.8766 21.483 10 Median NaN NaN NaN 0 0 Median 1.3279 1.1698 44.088 2 0 Median 0.74321 0.81707 NaN 1 0 Median 0.94959 0.83114 NaN 1 0 Median 0.82321 0.8406 4.7344 3 0 Median 1.2007 1.035 13.167 3 0 Median 28653000 14538000 14115000 0 0 0 1070000 442430 627600 3591400 2032800 1558600 300810 152550 148250 20545000 10506000 10039000 3146000 1404400 1741500 12675 2338 13187 64225;64226;64227;64228;64229;64230;64231;64232;64233;64234 64496;64497;64498;64499;64500 64499 5 GVNLPGAAVDLPAVSEK LVTEVENGGSLGSKKGVNLPGAAVDLPAVS NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K G V E K D 3 0 1 1 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 3 0 0 17 0 1635.8832 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 208 224 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 2.6204E-10 100.55 By MS/MS By MS/MS By MS/MS By MS/MS 7 3 1 2 0.8084 0.7211 20.455 12 Median 0.82343 0.79677 29.042 6 3 Median 0.81006 0.69737 3.654 3 0 Median 0.83009 0.80356 NaN 1 0 Median 0.75459 0.64808 6.3983 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246700000 129600000 117100000 153660000 81663000 71996000 67133000 35115000 32018000 23222000 11389000 11834000 2685100 1428900 1256300 0 0 0 0 0 0 12676 2005;1237 13188 64235;64236;64237;64238;64239;64240;64241;64242;64243;64244;64245;64246;64247 64501;64502;64503;64504;64505;64506;64507;64508;64509;64510;64511;64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523 64510 23 GVNLPGAAVDLPAVSEKDIQDLK LVTEVENGGSLGSKKGVNLPGAAVDLPAVS VDLPAVSEKDIQDLKFGVEQDVDMVFASFI K G V L K F 3 0 1 3 0 1 1 2 0 1 3 2 0 0 2 1 0 0 0 3 0 0 23 1 2348.2587 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 208 230 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3 6.3772E-15 68.944 By MS/MS By MS/MS By MS/MS 8 5 1 0.80079 0.76409 36.344 14 Median 0.80079 0.77727 23.023 8 0 Median 0.73284 0.69905 43.525 5 0 Median 0.81252 0.85078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 148890000 78370000 70521000 119190000 62568000 56624000 24623000 13241000 11382000 5075500 2561200 2514300 0 0 0 0 0 0 0 0 0 12677 2005;1237 13189 64248;64249;64250;64251;64252;64253;64254;64255;64256;64257;64258;64259;64260;64261 64524;64525;64526;64527;64528;64529;64530;64531;64532;64533;64534;64535;64536;64537;64538;64539;64540;64541;64542 64535 19 GVNQATAGVVASTISGK DKDSPNLAQLQQASRGVNQATAGVVASTIS NQATAGVVASTISGKSQIEETDNMDFSSMT R G V G K S 3 0 1 0 0 1 0 3 0 1 0 1 0 0 0 2 2 0 0 3 0 0 17 0 1558.8315 O00291 O00291 941 957 HIP1 Huntingtin-interacting protein 1 yes yes 2 6.5472E-11 89.959 By MS/MS By MS/MS 1 1 0.62425 0.64529 17.999 2 Median 0.57642 0.56817 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.67604 0.73287 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7653200 4577800 3075300 3574200 2234200 1340100 0 0 0 4078900 2343700 1735300 0 0 0 0 0 0 0 0 0 12678 1455 13190 64262;64263 64543;64544 64544 2 GVNSYPSLFIFR GAVNCGDDRMLCRMKGVNSYPSLFIFRSGM RMKGVNSYPSLFIFRSGMAPVKYHGDRSKE K G V F R S 0 1 1 0 0 0 0 1 0 1 1 0 0 2 1 2 0 0 1 1 0 0 12 0 1398.7296 E7EP04;A0A494C1G5;Q8IXB1 E7EP04 197 208 DNAJC10 DnaJ homolog subfamily C member 10 yes no 2 0.023134 31.422 By MS/MS By matching By matching 1 1 1 1.0035 1.0729 19.355 3 Median 0.86319 0.85459 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0035 1.0729 NaN 1 0 Median 1.5152 1.2559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3150600 1806100 1344500 1822600 1037300 785310 0 0 0 1167000 706790 460250 160960 62040 98917 0 0 0 0 0 0 12679 468 13191 64264;64265;64266 64545 64545 1 GVNTFSPEGR ______________________________ SEYDRGVNTFSPEGRLFQVEYAIEAIKLGS R G V G R L 0 1 1 0 0 0 1 2 0 0 0 0 0 1 1 1 1 0 0 1 0 0 10 0 1062.5094 P28066 P28066 11 20 PSMA5 Proteasome subunit alpha type-5 yes yes 2 9.1295E-16 189.7 By MS/MS By MS/MS 2 1 0.95417 0.92764 2.6721 3 Median 0.95225 0.91697 1.6356 2 0 Median 1.1307 0.95604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29451000 14516000 14935000 23911000 11806000 12105000 5539400 2709600 2829800 0 0 0 0 0 0 0 0 0 0 0 0 12680 2159 13192 64267;64268;64269 64546;64547;64548;64549 64546 4 GVNVSALSR LSDISSQTQSIYIPRGVNVSALSRDIKWDF SIYIPRGVNVSALSRDIKWDFTPCKNLRVG R G V S R D 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 9 0 901.49813 P38606;C9JA17;C9JVW8 P38606 121 129 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS 1 1 1 1.2621 1.1438 11.737 2 Median 1.3071 1.2427 NaN 1 0 Median 1.2186 1.0527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37757000 16125000 21632000 11478000 4805600 6672800 26278000 11319000 14959000 0 0 0 0 0 0 0 0 0 0 0 0 12681 2276 13193 64270;64271;64272 64550;64551;64552;64553;64554 64550 5 GVNWAAFHPTMPLIVSGADDR TTDAVVKHVLEGHDRGVNWAAFHPTMPLIV FHPTMPLIVSGADDRQVKIWRMNESKAWEV R G V D R Q 3 1 1 2 0 0 0 2 1 1 1 0 1 1 2 1 1 1 0 2 0 0 21 0 2253.1001 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 207 227 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2;3 5.0809E-09 55.588 By MS/MS By matching By MS/MS By matching 4 1 1 1 0.69571 0.70328 24.897 7 Median 0.67995 0.65955 5.2847 4 1 Median 0.90185 0.77231 NaN 1 0 Median 1.1327 1.2429 NaN 1 0 Median 1.062 0.94493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36132000 19350000 16782000 31103000 16996000 14106000 2120700 1070300 1050400 2771200 1198400 1572800 137390 84973 52413 0 0 0 0 0 0 12682 2473 13194 64273;64274;64275;64276;64277;64278;64279 64555;64556;64557;64558;64559;64560 64555 6 GVPAGNSDTEGGQPGR PKSFKRKISVVSATKGVPAGNSDTEGGQPG VPAGNSDTEGGQPGRKRRWGASTATTQKKP K G V G R K 1 1 1 1 0 1 1 5 0 0 0 0 0 0 2 1 1 0 0 1 0 0 16 0 1497.6808 S4R3H4;E7EQT4;Q9UKV3;G3V3B0;G3V3T3 S4R3H4 774 789 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.043919 22.879 By MS/MS 1 1.0197 1.0867 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0197 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median 1019700 432320 587400 0 0 0 0 0 0 0 0 0 0 0 0 1019700 432320 587400 0 0 0 12683 4560 13195 64280 64561 64561 1 GVPGAIVNVSSQCSQR VIQVSQIVARGLIARGVPGAIVNVSSQCSQ VPGAIVNVSSQCSQRAVTNHSVYCSTKGAL R G V Q R A 1 1 1 0 1 2 0 2 0 1 0 0 0 0 1 3 0 0 0 3 0 0 16 0 1657.8206 J3KS22;Q7Z4W1;J3QS36;J3KRZ4;J3QS45;J3KSZ5;J3QL34 J3KS22 124 139 DCXR L-xylulose reductase yes no 2 5.6448E-05 78.692 By MS/MS 1 1.3928 1.181 NaN 1 Median NaN NaN NaN 0 0 Median 1.3928 1.181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2459600 1018100 1441500 0 0 0 2459600 1018100 1441500 0 0 0 0 0 0 0 0 0 0 0 0 12684 1330 13196 64281 64562 64562 1 GVPGHAVVDHRPR RGAVHGRGRGRGRGRGVPGHAVVDHRPRAL GRGVPGHAVVDHRPRALEISAFTESDREDL R G V P R A 1 2 0 1 0 0 0 2 2 0 0 0 0 0 2 0 0 0 0 3 0 0 13 1 1395.7484 Q5T8P6 Q5T8P6 879 891 RBM26 RNA-binding protein 26 no no 3 0.022279 23.468 By MS/MS By matching 1 1 0.87383 0.84894 21.104 2 Median NaN NaN NaN 0 0 Median 0.7585 0.73125 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0067 0.98556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759700 901200 858520 0 0 0 1417300 730750 686540 0 0 0 342430 170460 171980 0 0 0 0 0 0 12685 3097 13197 64282;64283 64563 64563 1 GVPHPEDDHSQVEGPESLR APSPQHTDQTEAFQKGVPHPEDDHSQVEGP PEDDHSQVEGPESLR_______________ K G V L R - 0 1 0 2 0 1 3 2 2 0 1 0 0 0 3 2 0 0 0 2 0 0 19 0 2083.9559 Q6P996;H3BND4 Q6P996 770 788 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 3;4 0.00045827 32.981 By MS/MS By MS/MS 2 1 0.58186 0.57122 8.945 3 Median 0.55208 0.53911 8.1821 2 0 Median 0.6968 0.60673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7765600 5049600 2716000 5824200 3900100 1924100 1941300 1149400 791880 0 0 0 0 0 0 0 0 0 0 0 0 12686 3164 13198 64284;64285;64286 64564;64565;64566;64567;64568 64564 5 GVPLQFDINSVGK FLTKREQSDVKKVPKGVPLQFDINSVGKQT PKGVPLQFDINSVGKQTGMTLNERFGILKE K G V G K Q 0 0 1 1 0 1 0 2 0 1 1 1 0 1 1 1 0 0 0 2 0 0 13 0 1372.7351 Q96QD9 Q96QD9 273 285 FYTTD1 UAP56-interacting factor yes yes 2 0.00034725 76.143 By MS/MS 1 0.85739 0.85835 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85739 0.85835 NaN 1 0 Median NaN NaN NaN 0 0 Median 12425000 7034600 5390400 0 0 0 0 0 0 0 0 0 0 0 0 12425000 7034600 5390400 0 0 0 12687 3720 13199 64287 64569;64570 64569 2 GVPQQIEVAR PPPNSDPNLRRFTIRGVPQQIEVARQLIDE RFTIRGVPQQIEVARQLIDEKVGGTNLGAP R G V A R Q 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1095.6037 Q96I24 Q96I24 409 418 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.00036361 114.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 0.95256 0.90705 12.292 8 Median 0.85089 0.81671 NaN 1 0 Median 1.0401 0.9001 NaN 1 0 Median 0.91881 0.91929 0.80887 2 0 Median 1.1337 0.96232 5.6469 2 0 Median NaN NaN NaN 0 0 Median 0.89942 0.75143 16.741 2 0 Median 113370000 56124000 57246000 7398200 3867000 3531200 6328800 3326100 3002700 55759000 27928000 27831000 20093000 9708200 10384000 0 0 0 23791000 11294000 12497000 12688 3673 13200 64288;64289;64290;64291;64292;64293;64294;64295 64571;64572;64573;64574;64575;64576;64577;64578;64579;64580;64581;64582;64583;64584;64585;64586 64578 16 GVPTGFILPIR MAKTHLSLSHNPEQKGVPTGFILPIRDIRA PEQKGVPTGFILPIRDIRASVGAGFLYPLV K G V I R D 0 1 0 0 0 0 0 2 0 2 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1168.6968 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 879 889 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0001696 79.906 By MS/MS By MS/MS By MS/MS By matching By matching 5 2 1 1 1 0.76039 0.6979 21.718 9 Median 0.70375 0.67993 16.376 5 1 Median 0.81515 0.6874 NaN 1 0 Median 0.76039 0.81127 NaN 1 0 Median 0.99323 0.86457 NaN 1 0 Median 1.1576 1.2347 NaN 1 0 Median NaN NaN NaN 0 0 Median 30777000 17382000 13395000 23866000 13611000 10256000 128550 53960 74591 5347800 3116600 2231100 329620 173330 156300 1105100 427210 677880 0 0 0 12689 1968 13201 64296;64297;64298;64299;64300;64301;64302;64303;64304;64305 64587;64588;64589;64590;64591;64592;64593;64594 64589 8 GVPVAEFNTETTPATNR VVYPAAMFAPQVAARGVPVAEFNTETTPAT PVAEFNTETTPATNRFRFHFQGPCGTTLPE R G V N R F 2 1 2 0 0 0 2 1 0 0 0 0 0 1 2 0 4 0 0 2 0 0 17 0 1802.8799 Q9NXA8 Q9NXA8 268 284 SIRT5 NAD-dependent protein deacylase sirtuin-5, mitochondrial yes yes 2 1.1731E-07 77.185 By MS/MS 1 0.66755 0.62304 NaN 1 Median 0.66755 0.62304 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7397600 4103500 3294100 7397600 4103500 3294100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12690 4161 13202 64306 64595 64595 1 GVPVISVK GSRGTERTVVMDKSKGVPVISVKTSGSKER VVMDKSKGVPVISVKTSGSKERASKSQDRK K G V V K T 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 3 0 0 8 0 797.50109 Q15424 Q15424 571 578 SAFB Scaffold attachment factor B1 yes yes 2 0.059409 48.561 By MS/MS By MS/MS 1 1 1.4224 1.3299 14.763 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7366 1.4763 NaN 1 1 Median 1.165 1.1981 NaN 1 1 Median NaN NaN NaN 0 0 Median 8746700 2107600 6639100 0 0 0 0 0 0 0 0 0 2157800 495430 1662300 6588900 1612100 4976700 0 0 0 12691 2951 13203 64307;64308 64596;64597 64596 2 GVQLDSAGLER LGLPLDMVELMLEEKGVQLDSAGLERLAQE LEEKGVQLDSAGLERLAQEEAQHRARQAEP K G V E R L 1 1 0 1 0 1 1 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1143.5884 Q5JTZ9 Q5JTZ9 461 471 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.022183 54.982 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12692 3054 13204 64309 64598 64598 1 GVQLQTHPNVDKK KYGRIRLHVENEDKKGVQLQTHPNVDKKLF KKGVQLQTHPNVDKKLFTAESLIGLKNPEK K G V K K L 0 0 1 1 0 2 0 1 1 0 1 2 0 0 1 0 1 0 0 2 0 0 13 1 1462.7892 B0YIW6;P48444 B0YIW6 365 377 ARCN1 Coatomer subunit delta yes no 3 0.001166 39.016 By MS/MS By MS/MS By matching By matching 2 2 1 2 0.88134 0.83625 14.767 7 Median 0.77277 0.74096 5.6482 2 0 Median 0.88789 0.83236 0.65829 2 0 Median 1.077 1.1391 NaN 1 0 Median 0.91261 0.87675 4.0059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17740000 9400500 8339000 7433800 4101300 3332500 9533500 4865300 4668200 457160 263370 193790 315090 170540 144550 0 0 0 0 0 0 12693 561 13205 64310;64311;64312;64313;64314;64315;64316 64599;64600;64601;64602;64603 64600 5 GVQQLIQR QPLTEAKAKSKNKVRGVQQLIQRLRLIKSP KSKNKVRGVQQLIQRLRLIKSPAEIERMQI R G V Q R L 0 1 0 0 0 3 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 940.54541 Q9NQH7 Q9NQH7 235 242 XPNPEP3 Probable Xaa-Pro aminopeptidase 3 yes yes 2 0.0033897 89.673 By MS/MS By MS/MS 1 1 2.3684 2.0326 22.931 2 Median NaN NaN NaN 0 0 Median 2.0262 1.7283 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.7684 2.3904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4703100 1666600 3036500 0 0 0 3507200 1348100 2159100 0 0 0 1196000 318480 877480 0 0 0 0 0 0 12694 4063 13206 64317;64318 64604;64605 64604 2 GVQTLVIGR SPGVQPADVKEVVEKGVQTLVIGRGMSEAL KEVVEKGVQTLVIGRGMSEALKVPSSTVEY K G V G R G 0 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 1 0 0 2 0 0 9 0 941.56581 E9PNP3;E9PR47;Q9H7C9;E9PJP1;E9PLK9;K4DI89 E9PNP3 80 88 AAMDC Mth938 domain-containing protein yes no 2 8.8603E-07 159.2 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1844 1.0583 8.4258 4 Median 1.0486 1.0142 NaN 1 0 Median 1.3377 1.1427 NaN 1 0 Median 0.93481 0.94816 NaN 1 0 Median 1.4022 1.1042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115140000 52813000 62326000 56315000 26870000 29445000 49997000 21470000 28527000 6665900 3603000 3062900 2160700 869920 1290800 0 0 0 0 0 0 12695 974 13207 64319;64320;64321;64322 64606;64607;64608;64609;64610 64608 5 GVQVETISPGDGR ______________________________ ______________________________ M G V G R T 0 1 0 1 0 1 1 3 0 1 0 0 0 0 1 1 1 0 0 2 0 0 13 0 1313.6575 P62942;A0A087WZM5;Q1JUQ3;A0A087WTS4;A0A087WV48 P62942 2 14 FKBP1A;FKBP12-Exin Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase yes no 2 1.3988E-15 189.72 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0322 0.96031 6.2649 4 Median 0.94323 0.91253 NaN 1 0 Median 1.1089 0.95075 NaN 1 0 Median 0.96088 0.96997 NaN 1 0 Median 1.3468 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 270680000 128680000 142000000 51533000 25215000 26317000 168800000 78440000 90357000 45895000 23129000 22765000 4454500 1894400 2560100 0 0 0 0 0 0 12696 2612 13208 64323;64324;64325;64326 64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624 64622 14 GVQYLNEIK GPDGTGPNILTDITKGVQYLNEIKDSVVAG LTDITKGVQYLNEIKDSVVAGFQWATKEGA K G V I K D 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1062.571 P13639 P13639 668 676 EEF2 Elongation factor 2 yes yes 2 0.00082366 95.909 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 1 1.0255 0.89476 27.879 12 Median 0.91609 0.85217 38.351 4 1 Median 1.0255 0.89476 25.274 6 0 Median 1.2174 1.1734 NaN 1 0 Median 0.88702 0.76732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178620000 88422000 90200000 36835000 16532000 20303000 113820000 57761000 56055000 15106000 7649300 7456300 12865000 6479200 6385500 0 0 0 0 0 0 12697 1992 13209 64327;64328;64329;64330;64331;64332;64333;64334;64335;64336;64337;64338;64339 64625;64626;64627;64628;64629;64630;64631;64632 64631 8 GVQYLNEIKDSVVAGFQWATK GPDGTGPNILTDITKGVQYLNEIKDSVVAG EIKDSVVAGFQWATKEGALCEENMRGVRFD K G V T K E 2 0 1 1 0 2 1 2 0 1 1 2 0 1 0 1 1 1 1 3 0 0 21 1 2352.2114 P13639 P13639 668 688 EEF2 Elongation factor 2 yes yes 2;3 2.3192E-23 118.54 By MS/MS 4 0.95292 0.92314 13.584 4 Median NaN NaN NaN 0 0 Median 0.95292 0.92314 13.584 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43256000 21046000 22210000 0 0 0 43256000 21046000 22210000 0 0 0 0 0 0 0 0 0 0 0 0 12698 1992 13210 64340;64341;64342;64343 64633;64634;64635;64636 64634 4 GVRPVSFSDWEK PRPGYAAIQALLSSRGVRPVSFSDWEKLDA SSRGVRPVSFSDWEKLDAEEVARGQGTGKP R G V E K L 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 1 0 2 0 0 12 1 1405.699 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 449 460 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2;3 0.00019638 84.658 By MS/MS 3 1.1163 1.1288 21.604 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1163 1.1288 21.604 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43494000 20624000 22870000 0 0 0 0 0 0 43494000 20624000 22870000 0 0 0 0 0 0 0 0 0 12699 2102 13211 64344;64345;64346 64637;64638;64639;64640 64640 4 GVRPVSFSDWEKLDAEEVAR PRPGYAAIQALLSSRGVRPVSFSDWEKLDA SFSDWEKLDAEEVARGQGTGKPREKLVDPQ R G V A R G 2 2 0 2 0 0 3 1 0 0 1 1 0 1 1 2 0 1 0 3 0 0 20 2 2289.139 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 449 468 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 4 2.715E-11 77.391 By MS/MS 1 3.0967 3.6242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0967 3.6242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9664500 3894400 5770100 0 0 0 0 0 0 9664500 3894400 5770100 0 0 0 0 0 0 0 0 0 12700 2102 13212 64347 64641 64641 1 GVSAAGQVVSLK DMRKMSFQRCARTDKGVSAAGQVVSLKVWL TDKGVSAAGQVVSLKVWLIDDILEKINSHL K G V L K V 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 2 0 0 0 3 0 0 12 0 1114.6346 Q9Y606;F5H1S9;G8JLB3;F5GY32 Q9Y606 148 159 PUS1 tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase yes no 2 0.0028799 47.559 By MS/MS 1 0.67857 0.63381 NaN 1 Median 0.67857 0.63381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5841500 3313600 2527900 5841500 3313600 2527900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12701 4475 13213 64348 64642 64642 1 GVSAFSTWEK LEARMKQFKDMLLERGVSAFSTWEKELHKI MLLERGVSAFSTWEKELHKIVFDPRYLLLN R G V E K E 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 1 0 0 10 0 1110.5346 O14776;G3V220 O14776 674 683 TCERG1 Transcription elongation regulator 1 no no 2 0.00041321 76.064 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1.1651 1.1023 13.935 6 Median 1.18 1.1876 NaN 1 0 Median 1.3409 1.1769 NaN 1 0 Median 0.97305 1.0365 NaN 1 0 Median 1.2183 1.0789 11.746 2 0 Median NaN NaN NaN 0 0 Median 1.0128 0.8326 NaN 1 0 Median 35321000 18127000 17194000 1539500 692130 847340 2259500 1211600 1047900 25868000 13693000 12176000 5374900 2400000 2974900 0 0 0 278880 131010 147870 12702 1494 13214 64349;64350;64351;64352;64353;64354 64643;64644;64645;64646 64643 4 GVSAFSTWEKELHK LEARMKQFKDMLLERGVSAFSTWEKELHKI RGVSAFSTWEKELHKIVFDPRYLLLNPKER R G V H K I 1 0 0 0 0 0 2 1 1 0 1 2 0 1 0 2 1 1 0 1 0 0 14 1 1617.8151 O14776;G3V220 O14776 674 687 TCERG1 Transcription elongation regulator 1 no no 3;4 0.00018638 66.533 By MS/MS 2 0.87889 1.0145 17.282 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87889 1.0145 17.282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24518000 13058000 11460000 0 0 0 0 0 0 24518000 13058000 11460000 0 0 0 0 0 0 0 0 0 12703 1494 13215 64355;64356 64647;64648;64649 64647 3 GVSAVVVGADR TLITDSMVAAAMAHRGVSAVVVGADRVVAN MAHRGVSAVVVGADRVVANGDTANKVGTYQ R G V D R V 2 1 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1028.5615 Q9BV20 Q9BV20 239 249 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.00011372 128.36 By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 0.96928 0.92019 27.045 6 Median 0.92673 0.92019 5.6364 2 0 Median 0.9094 0.79277 NaN 1 0 Median 1.0343 1.0879 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5577 1.6466 NaN 1 0 Median 0.97483 0.82083 NaN 1 0 Median 25686000 13344000 12342000 9275100 4663000 4612200 6629200 3521200 3108000 4358300 2119700 2238600 0 0 0 3850700 2224200 1626500 1573200 816150 757040 12704 3844 13216 64357;64358;64359;64360;64361;64362 64650;64651;64652 64651 3 GVSAYSGHYIAHVK GGSYVYELSAVLIHRGVSAYSGHYIAHVKD RGVSAYSGHYIAHVKDPQSGEWYKFNDEDI R G V V K D 2 0 0 0 0 0 0 2 2 1 0 1 0 0 0 2 0 0 2 2 0 0 14 0 1487.7521 Q86UV5;H3BLX5 Q86UV5 346 359 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2;3 0.00012904 69.345 By MS/MS By MS/MS 2 4 1.1154 1.0853 30.009 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92701 0.99187 14.378 2 0 Median 1.3633 1.1938 37.219 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41681000 20201000 21480000 0 0 0 0 0 0 21387000 11378000 10009000 20294000 8823500 11471000 0 0 0 0 0 0 12705 3281 13217 64363;64364;64365;64366;64367;64368 64653;64654;64655;64656;64657 64655 5 GVSAYSGHYIAHVKDPQSGEWYK GGSYVYELSAVLIHRGVSAYSGHYIAHVKD YIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ R G V Y K F 2 0 0 1 0 1 1 3 2 1 0 2 0 0 1 3 0 1 3 2 0 0 23 1 2578.2241 Q86UV5;H3BLX5 Q86UV5 346 368 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 4 7.1274E-05 33.024 By MS/MS 1 0.80837 0.9344 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80837 0.9344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10381000 6232500 4148100 0 0 0 0 0 0 10381000 6232500 4148100 0 0 0 0 0 0 0 0 0 12706 3281 13218 64369 64658 64658 1 GVSEAAVLK ISQVGNVDTASELEKGVSEAAVLKPSEELP ASELEKGVSEAAVLKPSEELPAEATSSVEP K G V L K P 2 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 872.49673 O95104 O95104 1112 1120 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 2 0.030672 36.185 By matching By matching By MS/MS By matching 1 1 4 1 0.92567 0.93113 35.221 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87124 0.83386 NaN 1 0 Median 2.6537 2.2127 NaN 1 0 Median 0.91874 0.91268 7.8882 4 0 Median 1.4058 1.1821 NaN 1 0 Median 46500000 23486000 23015000 0 0 0 0 0 0 4225100 2245100 1980000 257480 76785 180700 41758000 21068000 20691000 259360 95957 163400 12707 1745 13219 64370;64371;64372;64373;64374;64375;64376 64659;64660 64660 2 GVSEAAVLKPSEELPAEATSSVEPEKDSGSAAEAPR ISQVGNVDTASELEKGVSEAAVLKPSEELP VEPEKDSGSAAEAPR_______________ K G V P R - 7 1 0 1 0 0 7 2 0 0 2 2 0 0 4 6 1 0 0 3 0 0 36 2 3594.7537 O95104 O95104 1112 1147 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 3;4 9.3714E-24 70.525 By MS/MS 2 0.40588 0.46249 10.822 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40588 0.46249 10.822 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36419000 26909000 9509500 0 0 0 0 0 0 36419000 26909000 9509500 0 0 0 0 0 0 0 0 0 12708 1745 13220 64377;64378 64661;64662;64663 64662 3 GVSFTFGADVVSK SDPDKDVQGWGENDRGVSFTFGADVVSKFL DRGVSFTFGADVVSKFLNRHDLDLICRAHQ R G V S K F 1 0 0 1 0 0 0 2 0 0 0 1 0 2 0 2 1 0 0 3 0 0 13 0 1312.6663 P62140 P62140 221 233 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 2 0.0020223 49.35 By MS/MS By matching 1 1 0.87326 0.81171 20.17 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97909 0.93614 NaN 1 0 Median 0.77888 0.70382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3198000 1452800 1745100 0 0 0 0 0 0 3065000 1381800 1683200 133000 71088 61908 0 0 0 0 0 0 12709 2570 13221 64379;64380 64664 64664 1 GVSFYEVPPHLFAVADTVYR RDLQIYSRQHMERYRGVSFYEVPPHLFAVA EVPPHLFAVADTVYRALRTERRDQAVMISG R G V Y R A 2 1 0 1 0 0 1 1 1 0 1 0 0 2 2 1 1 0 2 4 0 0 20 0 2266.1423 F5H6E2;O00159;I3L501;I3L3Y6;I3L3F5 F5H6E2 82 101 MYO1C Unconventional myosin-Ic yes no 3 0.023083 14.46 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74138 0.7128 13.894 4 Median 0.66855 0.66029 NaN 1 0 Median 0.82215 0.72254 NaN 1 0 Median 0.65795 0.70319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85046 0.9079 NaN 1 0 Median NaN NaN NaN 0 0 Median 4057900 2415800 1642100 2093100 1246200 846890 256290 133440 122850 529180 327110 202070 0 0 0 1179300 709020 470250 0 0 0 12710 1042 13222 64381;64382;64383;64384 64665;64666;64667 64667 3 GVSPEPIHLK QEIENETERISGNNKGVSPEPIHLKIFSPN SGNNKGVSPEPIHLKIFSPNVVNLTLVDLP K G V L K I 0 0 0 0 0 0 1 1 1 1 1 1 0 0 2 1 0 0 0 1 0 0 10 0 1075.6026 O00429;F8W1W3;B4DPZ9;F8VUJ9 O00429 124 133 DNM1L Dynamin-1-like protein yes no 2 0.052168 43.442 By MS/MS 1 0.78723 0.69542 NaN 1 Median NaN NaN NaN 0 0 Median 0.78723 0.69542 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2263900 1345500 918400 0 0 0 2263900 1345500 918400 0 0 0 0 0 0 0 0 0 0 0 0 12711 1463 13223 64385 64668 64668 1 GVSQDLLER TPPATPPAASPSALKGVSQDLLERIRAKEA SPSALKGVSQDLLERIRAKEAQKQLAQMTR K G V E R I 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1015.5298 Q9H211;H3BSY1 Q9H211 417 425 CDT1 DNA replication factor Cdt1 yes no 2 0.030308 49.418 By MS/MS 1 1.0776 0.90564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0776 0.90564 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 653420 274110 379310 0 0 0 0 0 0 0 0 0 653420 274110 379310 0 0 0 0 0 0 12712 3938 13224 64386 64669 64669 1 GVSQMPLR YDEAISDYFRKQYSKGVSQMPLRYGMNPHQ FRKQYSKGVSQMPLRYGMNPHQTPAQLYTL K G V L R Y 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 8 0 886.46947 P31939;C9JLK0 P31939 200 207 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.005683 74.415 By MS/MS By matching 1 1 0.98702 0.89637 13.319 2 Median 1.0331 0.98489 NaN 1 0 Median 0.94299 0.8158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20734000 10409000 10326000 10138000 5134800 5003200 10596000 5274000 5322500 0 0 0 0 0 0 0 0 0 0 0 0 12713 2207 13225 64387;64388 64670 64670 1 GVSVWPVGLVGGLR NTYSRELFEEMRWTRGVSVWPVGLVGGLRF RGVSVWPVGLVGGLRFEGPQVQDGRVVGFH R G V L R F 0 1 0 0 0 0 0 4 0 0 2 0 0 0 1 1 0 1 0 4 0 0 14 0 1394.8034 O94766;G3V150 O94766 212 225 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes no 2 0.0002763 76.465 By MS/MS 1 0.78326 0.78097 NaN 1 Median 0.78326 0.78097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3203700 1757100 1446500 3203700 1757100 1446500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12714 1101 13226 64389 64671 64671 1 GVTFLFPIQAK NFPISEETIKLLKGRGVTFLFPIQAKTFHH LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA R G V A K T 1 0 0 0 0 1 0 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1219.6965 Q9NR30 Q9NR30 205 215 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00026393 73.248 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 4 4 3 3 1.1914 1.1571 15.535 18 Median 1.2302 1.222 6.9225 2 0 Median 1.4737 1.2886 44.084 2 0 Median 1.1914 1.2765 15.101 4 0 Median 1.1985 1.0832 9.3553 4 0 Median 1.1926 1.1848 7.4107 3 0 Median 1.1748 0.99013 8.7674 3 0 Median 110790000 49519000 61269000 5633400 2337400 3296000 7380400 3309600 4070800 69043000 30703000 38340000 2762400 1250900 1511500 23055000 10571000 12484000 2913000 1346700 1566300 12715 4076 13227 64390;64391;64392;64393;64394;64395;64396;64397;64398;64399;64400;64401;64402;64403;64404;64405;64406;64407 64672;64673;64674;64675;64676;64677 64674 6 GVTFLLR TPGLNTTLLCLSGLRGVTFLLRLEGEDQFL LLCLSGLRGVTFLLRLEGEDQFLEVAEAPE R G V L R L 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 1 0 0 7 0 804.48577 CON__Q2KJF1;M0R009;P04217 CON__Q2KJF1 148 154 A1BG Alpha-1B-glycoprotein yes no 2 0.028184 66.994 By MS/MS 1 0.80376 0.7993 NaN 1 Median 0.80376 0.7993 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2950500 1468900 1481700 2950500 1468900 1481700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 12716 773 13228 64408 64678 64678 1 GVTFNVTTVDTK NCPFSQRLFMVLWLKGVTFNVTTVDTKRRT WLKGVTFNVTTVDTKRRTETVQKLCPGGQL K G V T K R 0 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 4 0 0 3 0 0 12 0 1280.6612 O00299 O00299 38 49 CLIC1 Chloride intracellular channel protein 1 yes yes 2 2.5304E-06 132.91 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 1 2 1 1 1.0553 0.91934 51.347 11 Median 1.1744 1.0605 0.46004 3 2 Plateau 1.0553 0.87601 19.156 3 0 Median 1.0458 0.9803 NaN 1 1 Median 0.50097 0.42531 109.01 2 0 Median 0.80654 0.89069 NaN 1 0 Median 0.58662 0.50259 NaN 1 0 Median 300360000 142620000 157740000 212040000 97853000 114180000 55185000 26659000 28526000 15968000 7738600 8229200 10663000 7114900 3548100 3043000 1416900 1626200 3464600 1839800 1624800 12717 1456 13229 64409;64410;64411;64412;64413;64414;64415;64416;64417;64418;64419 64679;64680;64681;64682;64683;64684;64685;64686;64687;64688 64683 10 GVTFNVTTVDTKR NCPFSQRLFMVLWLKGVTFNVTTVDTKRRT LKGVTFNVTTVDTKRRTETVQKLCPGGQLP K G V K R R 0 1 1 1 0 0 0 1 0 0 0 1 0 1 0 0 4 0 0 3 0 0 13 1 1436.7623 O00299 O00299 38 50 CLIC1 Chloride intracellular channel protein 1 yes yes 2;3 0.00014872 141.95 By MS/MS By matching By matching 3 4 1 1.1957 1.2136 23.02 8 Median 1.1305 1.1409 1.9495 3 0 Plateau 1.3915 1.2678 34.611 4 0 Median 1.2412 1.2748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51483000 23758000 27725000 40542000 18758000 21784000 9026800 3966200 5060600 1913700 1033900 879800 0 0 0 0 0 0 0 0 0 12718 1456 13230 64420;64421;64422;64423;64424;64425;64426;64427 64689;64690;64691 64689 3 GVTIASGGVLPNIHPELLAK LLAVANDEELNQLLKGVTIASGGVLPNIHP SGGVLPNIHPELLAKKRGSKGKLEAIITPP K G V A K K 2 0 1 0 0 0 1 3 1 2 3 1 0 0 2 1 1 0 0 2 0 0 20 0 1985.131 O75367;D6RCF2 O75367 97 116 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 2.6345E-19 109.84 By matching By MS/MS By MS/MS 1 12 7 0.74877 0.75151 15.833 20 Median NaN NaN NaN 0 0 Median 1.4066 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70135 0.6966 11.633 12 1 Median 1.0244 0.83078 5.0105 7 2 Median 2053900000 1089400000 964490000 0 0 0 1295000 536810 758170 0 0 0 0 0 0 1325000000 739080000 585960000 727550000 349790000 377770000 12719 1662 13231 64428;64429;64430;64431;64432;64433;64434;64435;64436;64437;64438;64439;64440;64441;64442;64443;64444;64445;64446;64447 64692;64693;64694;64695;64696;64697;64698;64699;64700;64701;64702;64703;64704;64705;64706;64707;64708;64709;64710;64711;64712;64713;64714;64715;64716;64717;64718;64719;64720;64721;64722 64720 31 GVTIASGGVLPR LLAVANDEELNQLLKGVTIASGGVLPRIHP LLKGVTIASGGVLPRIHPELLAKKRGTKGK K G V P R I 1 1 0 0 0 0 0 3 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1125.6506 Q9P0M6 Q9P0M6 97 108 H2AFY2 Core histone macro-H2A.2 yes yes 2 3.4142E-06 125.82 By MS/MS By MS/MS 3 1 0.7536 0.75407 23.198 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73478 0.73035 3.9529 3 0 Median 1.4802 1.1779 NaN 1 0 Median 186750000 102000000 84752000 0 0 0 0 0 0 0 0 0 0 0 0 162900000 92141000 70763000 23850000 9861200 13989000 12720 4206 13232 64448;64449;64450;64451 64723;64724;64725;64726;64727;64728;64729;64730;64731;64732 64730 10 GVTIKPTVDDD VEKHWRLIGWGQIRRGVTIKPTVDDD____ QIRRGVTIKPTVDDD_______________ R G V D D - 0 0 0 3 0 0 0 1 0 1 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1158.5768 P41091;Q2VIR3 P41091 462 472 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 6.4597E-09 170.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 3 1 1.0186 0.89522 25.244 10 Median 1.1207 1.0602 16.051 2 0 Median 1.013 0.85722 NaN 1 0 Median 1.1003 1.0571 22.347 3 0 Median 1.019 0.91135 5.9655 3 0 Plateau NaN NaN NaN 0 0 Median 0.60521 0.49525 NaN 1 0 Median 189060000 91508000 97552000 20111000 9921100 10190000 20023000 9818600 10204000 40178000 19261000 20916000 108450000 52327000 56119000 0 0 0 303130 179670 123460 12721 2295 13233 64452;64453;64454;64455;64456;64457;64458;64459;64460;64461 64733;64734;64735;64736;64737;64738;64739;64740;64741;64742;64743;64744;64745;64746 64741 14 GVTIPYR ICVVMLETLSQSPPKGVTIPYRPKPSSSPV TLSQSPPKGVTIPYRPKPSSSPVIFAGGQD K G V Y R P 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 1 0 0 7 0 804.44939 F8VRH0;H3BRU6;F8VZX2;Q15366;H3BSS4 Q15366 177 183 PCBP2 Poly(rC)-binding protein 2 no no 2 0.0078867 87.582 By MS/MS By MS/MS By matching 2 1 2 1.1016 1.0861 12.037 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97001 1.004 11.118 2 0 Median 1.009 0.8936 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3533 1.1423 5.228 2 0 Median 7506700 4009400 3497200 0 0 0 0 0 0 5652400 3149400 2503000 879320 447220 432100 0 0 0 974950 412780 562170 12722 2942;1077;1062 13234 64462;64463;64464;64465;64466 64747;64748;64749;64750 64747 4 GVTIPYRPK ICVVMLETLSQSPPKGVTIPYRPKPSSSPV SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY K G V P K P 0 1 0 0 0 0 0 1 0 1 0 1 0 0 2 0 1 0 1 1 0 0 9 1 1029.5971 F8VRH0;H3BRU6;F8VZX2;Q15366;H3BSS4 Q15366 177 185 PCBP2 Poly(rC)-binding protein 2 no no 2 0.0044928 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 3 2 1 2 0.84415 0.82936 24.675 11 Median 0.83797 0.86533 4.1719 2 0 Median 0.8423 0.78995 NaN 1 0 Median 0.73658 0.83931 8.8609 3 0 Median 0.90798 0.78964 6.9405 2 2 Median 1.7116 1.8066 NaN 1 0 Median 0.90174 0.80118 1.6822 2 0 Median 75720000 40700000 35021000 11252000 6155400 5096800 3285700 1778000 1507700 39418000 22149000 17268000 10881000 5468600 5412200 2078900 718890 1360000 8805200 4429200 4376100 12723 2942;1077;1062 13235 64467;64468;64469;64470;64471;64472;64473;64474;64475;64476;64477 64751;64752;64753;64754;64755;64756;64757;64758;64759;64760;64761;64762;64763 64756 13 GVTIPYRPKPSSSPVIFAGGQDR ICVVMLETLSQSPPKGVTIPYRPKPSSSPV KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K G V D R Y 1 2 0 1 0 1 0 3 0 2 0 1 0 1 4 3 1 0 1 2 0 0 23 2 2428.2863 Q15366;H3BSS4 Q15366 177 199 PCBP2 Poly(rC)-binding protein 2 yes no 3;4 9.5221E-35 135.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 6 5 4 2 0.6078 0.65182 33.37 22 Median 0.52553 0.59245 31.808 3 0 Median 0.61759 0.62558 9.6335 2 0 Median 0.54508 0.68652 8.2608 6 0 Median 0.60336 0.55258 14.961 5 0 Median 1.1088 1.2057 14.096 4 0 Median 0.78341 0.75373 10.005 2 0 Median 774470000 473260000 301220000 107930000 69044000 38884000 4312000 2438400 1873600 565120000 353540000 211580000 24236000 14531000 9705600 70180000 32199000 37980000 2698100 1501300 1196800 12724 2942 13236 64478;64479;64480;64481;64482;64483;64484;64485;64486;64487;64488;64489;64490;64491;64492;64493;64494;64495;64496;64497;64498;64499 64764;64765;64766;64767;64768;64769;64770;64771;64772;64773;64774;64775;64776;64777;64778;64779;64780;64781;64782;64783;64784;64785;64786;64787;64788;64789;64790 64767 27 GVTIPYRPKPSSSPVIFAGGQLTK ICVVMLETLSQSPPKGVTIPYRPKPSSSPV PSSSPVIFAGGQLTKLHQLAMQQSHFPMTH K G V T K L 1 1 0 0 0 1 0 3 0 2 1 2 0 1 4 3 2 0 1 2 0 0 24 2 2499.3849 H3BRU6;F8VZX2 H3BRU6 158 181 PCBP2 yes no 3 0.0016002 26.005 By matching By MS/MS 1 1 0.55594 0.60213 36.55 2 Median 0.44891 0.465 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6885 0.77972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10766000 7009200 3756600 8363800 5562900 2800800 0 0 0 2402000 1446200 955750 0 0 0 0 0 0 0 0 0 12725 1077 13237 64500;64501 64791 64791 1 GVTIQPLKR DPSQPIDLTQLVNGRGVTIQPLKRDYGVQL QLVNGRGVTIQPLKRDYGVQLVEEGADTFT R G V K R D 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 9 1 1010.6237 Q9P015;E5RIZ4;E5RHF4 Q9P015 126 134 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.00091643 107.43 By MS/MS By MS/MS By MS/MS 1 1 1 1.3089 1.1862 18.191 3 Median 0.98205 0.98136 NaN 1 0 Median 1.3089 1.1862 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.496 1.4118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10213000 4643100 5569600 6203900 2965300 3238600 2242800 951560 1291200 0 0 0 1766100 726240 1039800 0 0 0 0 0 0 12726 4197 13238 64502;64503;64504 64792;64793;64794;64795 64792 4 GVTIVKPIVYGNVAR KRMAEFGPDSGGRVKGVTIVKPIVYGNVAR GVTIVKPIVYGNVARYFGKKREEDGHTHQW K G V A R Y 1 1 1 0 0 0 0 2 0 2 0 1 0 0 1 0 1 0 1 4 0 0 15 1 1584.9352 O95619;F8W1B9;F8W0J4 O95619 18 32 YEATS4 YEATS domain-containing protein 4 yes no 2;3 1.2286E-08 127.4 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 0.95439 0.84903 12.939 10 Median 0.82237 0.86186 23.483 2 0 Median NaN NaN NaN 0 0 Median 0.8974 0.95001 17.537 2 0 Median 1.0076 0.89195 11.962 2 0 Median 0.88011 0.93219 17.193 2 0 Median 0.95527 0.84372 2.5314 2 0 Median 136360000 72546000 63817000 11362000 5248500 6113800 0 0 0 80950000 43509000 37442000 11244000 5778300 5465400 21887000 12215000 9672400 10919000 5795700 5123400 12727 1783 13239 64505;64506;64507;64508;64509;64510;64511;64512;64513;64514 64796;64797;64798;64799;64800;64801;64802;64803;64804;64805;64806;64807;64808 64800 13 GVTNDQVDPSVDVLK CLAPFMKHPLKIVLRGVTNDQVDPSVDVLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE R G V L K A 0 0 1 3 0 1 0 1 0 0 1 1 0 0 1 1 1 0 0 4 0 0 15 0 1584.7995 Q9Y2P8 Q9Y2P8 119 133 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.0003095 67.385 By MS/MS By MS/MS By matching 1 2 1 0.92516 0.878 16.749 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78827 0.81462 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0064 1.0221 10.9 2 0 Median 0.90745 0.75679 NaN 1 0 Median 49613000 24601000 25011000 0 0 0 0 0 0 12389000 6627300 5761700 0 0 0 35803000 17277000 18526000 1420700 697170 723540 12728 4385 13240 64515;64516;64517;64518 64809;64810;64811;64812;64813 64810 5 GVTQFGNK MSVVPPNRSQTGWPRGVTQFGNKYIQQTKP SQTGWPRGVTQFGNKYIQQTKPLTLERTIN R G V N K Y 0 0 1 0 0 1 0 2 0 0 0 1 0 1 0 0 1 0 0 1 0 0 8 0 849.43447 O43809 O43809 16 23 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 0.0034718 94.163 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2336 1.0857 8.0902 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0899 1.0219 NaN 1 0 Median 1.2729 1.0538 NaN 1 0 Median 1.1955 1.228 NaN 1 0 Median 1.3298 1.1184 NaN 1 0 Median 24307000 11209000 13097000 0 0 0 0 0 0 20140000 9416900 10723000 2070900 890160 1180700 1070300 498650 571600 1026100 403720 622400 12729 1592 13241 64519;64520;64521;64522 64814;64815;64816;64817 64815 4 GVTQYYAYVTER QKPYEINLMEELTLKGVTQYYAYVTERQKV TLKGVTQYYAYVTERQKVHCLNTLFSRLQI K G V E R Q 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 2 0 3 2 0 0 12 0 1448.6936 P26196 P26196 308 319 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 5.3523E-06 115.78 By MS/MS By matching By matching 1 1 1 1.5553 1.3815 15.381 3 Median 1.2138 1.1529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5553 1.5655 NaN 1 0 Median 1.5785 1.3815 NaN 1 0 Median 19533000 9137200 10396000 15901000 7494800 8406400 0 0 0 0 0 0 0 0 0 3269500 1511400 1758100 362270 130990 231280 12730 2140 13242 64523;64524;64525 64818 64818 1 GVTSILPVLR ESKGEHVPGFCLPKKGVTSILPVLREGVLT CLPKKGVTSILPVLREGVLTGSPEQKEEAA K G V L R E 0 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 10 0 1053.6546 Q92616 Q92616 2260 2269 GCN1L1 Translational activator GCN1 yes yes 2 0.0037391 55.676 By MS/MS By MS/MS By matching 1 2 1 0.96872 0.86735 14.425 4 Linear 0.99036 0.98405 NaN 1 0 Median 0.87136 0.75957 8.2222 2 1 Median 0.83859 0.93448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7234600 3553600 3681000 2488600 1102500 1386100 3938700 1970400 1968300 807290 480760 326540 0 0 0 0 0 0 0 0 0 12731 3544 13243 64526;64527;64528;64529 64819;64820 64819 2 GVTYSLESFLGPR LNFGQVKNCEVEQVKGVTYSLESFLGPRMC VKGVTYSLESFLGPRMCTEDLPFPPAASCD K G V P R M 0 1 0 0 0 0 1 2 0 0 2 0 0 1 1 2 1 0 1 1 0 0 13 0 1424.73 B1AKM8;B1AKM6;H0Y7P7;Q9UG56 B1AKM8 176 188 PISD Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes no 2 0.0010336 60.434 By MS/MS By MS/MS 3 1 1.1693 1.1044 19.937 4 Median 1.0382 1.0077 22.858 3 2 Median 1.4535 1.2105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9015100 3836800 5178300 3327800 1676200 1651700 5687300 2160600 3526600 0 0 0 0 0 0 0 0 0 0 0 0 12732 567 13244 64530;64531;64532;64533 64821;64822;64823 64823 3 GVVDRLEVVNKR REITWKDFVNNYLSKGVVDRLEVVNKRFVR LSKGVVDRLEVVNKRFVRVTFTPGKTPVDG K G V K R F 0 2 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 4 0 0 12 2 1382.7994 Q9Y4W6;K7EP56 Q9Y4W6 183 194 AFG3L2 AFG3-like protein 2 yes no 3 9.1484E-05 83.314 By MS/MS By matching By matching 1 1 1 1.1429 1.2821 23.391 3 Median 0.97417 0.98265 NaN 1 0 Median 1.2867 1.5664 NaN 1 0 Median 1.1429 1.2821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9186500 4179100 5007400 5252300 2713200 2539200 613250 253350 359900 3320900 1212600 2108300 0 0 0 0 0 0 0 0 0 12733 4449 13245 64534;64535;64536 64824;64825 64824 2 GVVDSDDLPLNVSR DDFHDMMPKYLNFVKGVVDSDDLPLNVSRE KGVVDSDDLPLNVSRETLQQHKLLKVIRKK K G V S R E 0 1 1 3 0 0 0 1 0 0 2 0 0 0 1 2 0 0 0 3 0 0 14 0 1484.7471 P14625 P14625 435 448 HSP90B1 Endoplasmin yes yes 2 4.9846E-08 160.36 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 2 1.013 0.9108 24.21 11 Median 0.90678 0.87707 2.7958 4 0 Median 1.124 0.96878 4.271 4 0 Median 0.8588 0.9108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.607 1.6379 1.7999 2 0 Median NaN NaN NaN 0 0 Median 350770000 174210000 176550000 243920000 125350000 118580000 83898000 38113000 45785000 14203000 7784400 6418500 0 0 0 8739600 2968800 5770800 0 0 0 12734 2006 13246 64537;64538;64539;64540;64541;64542;64543;64544;64545;64546;64547 64826;64827;64828;64829;64830;64831;64832;64833;64834;64835;64836;64837;64838;64839 64830 14 GVVDSEDLPLNISR DNCEELIPEYLNFIRGVVDSEDLPLNISRE RGVVDSEDLPLNISREMLQQSKILKVIRKN R G V S R E 0 1 1 2 0 0 1 1 0 1 2 0 0 0 1 2 0 0 0 2 0 0 14 0 1512.7784 P07900;P08238 P07900 387 400 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 2;3 1.6506E-32 212.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 4 3 7 4 0.99639 0.89385 22.471 31 Median 0.96777 0.93104 7.7299 7 1 Median 0.9392 0.81474 9.5229 6 2 Median 0.85037 0.87518 22.394 4 1 Median 0.94417 0.81392 26.211 3 0 Median 1.2559 1.3286 14.726 7 3 Median 1.0467 0.86028 4.4343 4 0 Median 5766200000 2858400000 2907900000 2120800000 1022400000 1098400000 3255600000 1646700000 1608800000 241340000 123260000 118080000 45508000 22083000 23425000 91599000 38322000 53277000 11394000 5503900 5889800 12735 1894;1899 13247 64548;64549;64550;64551;64552;64553;64554;64555;64556;64557;64558;64559;64560;64561;64562;64563;64564;64565;64566;64567;64568;64569;64570;64571;64572;64573;64574;64575;64576;64577;64578 64840;64841;64842;64843;64844;64845;64846;64847;64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859;64860;64861;64862;64863;64864;64865;64866;64867;64868;64869;64870;64871;64872;64873;64874;64875;64876;64877;64878;64879;64880;64881;64882;64883;64884;64885;64886 64864 47 GVVENYNDEEVSIR CEIGKPEPLNEEEARGVVENYNDEEVSIRV RGVVENYNDEEVSIRVGGNTQPSKVLNKKN R G V I R V 0 1 2 1 0 0 3 1 0 1 0 0 0 0 0 1 0 0 1 3 0 0 14 0 1621.7584 O94782 O94782 634 647 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes yes 2 1.316E-07 114.83 By MS/MS 1 1.1218 1.1961 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1218 1.1961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5729100 2456700 3272400 0 0 0 0 0 0 5729100 2456700 3272400 0 0 0 0 0 0 0 0 0 12736 1724 13248 64579 64887 64887 1 GVVEVTHDLQK MGKMQKKAVAISLPKGVVEVTHDLQKHLAG SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK K G V Q K H 0 0 0 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 3 0 0 11 0 1223.651 P50454;E9PKH2 P50454 309 319 SERPINH1 Serpin H1 yes no 2;3 6.6515E-15 186.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 8 7 8 6 8 1.272 1.1398 28.773 46 Median 0.91477 0.84725 25.768 9 0 Median 1.355 1.1522 25.405 8 1 Median 1.0449 0.99812 43.225 7 0 Median 1.3743 1.1692 20.014 8 1 Median 1.3777 1.3835 15.788 6 0 Median 1.4464 1.1782 11.442 8 0 Median 555140000 240020000 315120000 103120000 48473000 54646000 66874000 28438000 38436000 107510000 49507000 58004000 143750000 60836000 82909000 52570000 20328000 32242000 81325000 32442000 48883000 12737 2414 13249 64580;64581;64582;64583;64584;64585;64586;64587;64588;64589;64590;64591;64592;64593;64594;64595;64596;64597;64598;64599;64600;64601;64602;64603;64604;64605;64606;64607;64608;64609;64610;64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621;64622;64623;64624;64625 64888;64889;64890;64891;64892;64893;64894;64895;64896;64897;64898;64899;64900;64901;64902;64903;64904;64905;64906;64907;64908;64909;64910;64911;64912;64913;64914;64915;64916;64917;64918;64919;64920;64921;64922;64923;64924;64925;64926;64927;64928;64929;64930;64931;64932;64933;64934;64935;64936;64937;64938;64939;64940;64941;64942;64943;64944;64945;64946;64947;64948;64949;64950 64918 63 GVVFSVTTVDLKR NCPFSQRLFMILWLKGVVFSVTTVDLKRKP LKGVVFSVTTVDLKRKPADLQNLAPGTHPP K G V K R K 0 1 0 1 0 0 0 1 0 0 1 1 0 1 0 1 2 0 0 4 0 0 13 1 1419.8086 Q9Y696 Q9Y696 49 61 CLIC4 Chloride intracellular channel protein 4 yes yes 3 0.0002544 59.898 By MS/MS By matching 1 1 0.99487 0.98629 39.542 2 Median 1.2445 1.3045 NaN 1 0 Median 0.79533 0.74572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6685500 2535200 4150300 5514400 2062900 3451500 1171100 472330 698770 0 0 0 0 0 0 0 0 0 0 0 0 12738 4483 13250 64626;64627 64951 64951 1 GVVGGVTGIITKPVEGAK DFGDSLARGGKGFLRGVVGGVTGIITKPVE GGVTGIITKPVEGAKKEGAAGFFKGIGKGL R G V A K K 1 0 0 0 0 0 1 5 0 2 0 2 0 0 1 0 2 0 0 4 0 0 18 1 1680.9774 Q709C8;A0A3B3IU50 Q709C8 3527 3544 VPS13C Vacuolar protein sorting-associated protein 13C yes no 2;3 4.561E-13 120.87 By MS/MS By matching 2 2 0.644 0.65635 52.134 4 Median 0.5557 0.60525 13.947 2 0 Median 1.1094 1.0559 69.729 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38562000 23320000 15242000 30033000 18658000 11376000 8528400 4661700 3866700 0 0 0 0 0 0 0 0 0 0 0 0 12739 3205 13251 64628;64629;64630;64631 64952;64953 64953 2 GVVGPELYGR PHSPESLSVDEAVRRGVVGPELYGRLKRAE EAVRRGVVGPELYGRLKRAEGAIAGFRDPF R G V G R L 0 1 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 0 1 2 0 0 10 0 1045.5556 P58107;A0A075B730 P58107 991 1000 EPPK1 Epiplakin yes no 2 0.0005372 95.741 By MS/MS By MS/MS 2 1 1.162 1.0691 17.259 3 Median 1.1613 1.1919 15.368 2 0 Median 1.162 0.94488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26749000 12850000 13899000 16721000 8284300 8436500 10028000 4566100 5462000 0 0 0 0 0 0 0 0 0 0 0 0 12740 2520 13252 64632;64633;64634 64954;64955;64956 64955 3 GVVHVYTR STMPGDLGLGLRMVRGVVHVYTRREPDEHC LGLRMVRGVVHVYTRREPDEHCSEVELPYP R G V T R R 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 3 0 0 8 0 929.5083 H0Y360;Q01433;A0A590UK85;A0A590UJY6 H0Y360 274 281 AMPD2 AMP deaminase 2 yes no 2 0.012836 54.205 By MS/MS 1 1.4524 1.2602 NaN 1 Median NaN NaN NaN 0 0 Median 1.4524 1.2602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2458500 938260 1520200 0 0 0 2458500 938260 1520200 0 0 0 0 0 0 0 0 0 0 0 0 12741 1141 13253 64635 64957 64957 1 GVVLFPWQAR YETGQLFLHSIFGYRGVVLFPWQARLYDRD IFGYRGVVLFPWQARLYDRDVASAAPEKAE R G V A R L 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 2 0 0 10 0 1171.6502 Q9Y2S7 Q9Y2S7 92 101 POLDIP2 Polymerase delta-interacting protein 2 yes yes 2 0.024284 35.88 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.023 1.0138 18.301 6 Median 1.045 1.0364 NaN 1 0 Median 0.90158 0.76782 11.917 2 0 Median 1.0177 0.99163 NaN 1 0 Median 1.3754 1.1573 NaN 1 0 Median 1.0283 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median 9628700 4721900 4906800 6427700 3167400 3260300 239360 127490 111870 2061200 1031600 1029700 284170 122610 161560 616250 272820 343420 0 0 0 12742 4390 13254 64636;64637;64638;64639;64640;64641 64958 64958 1 GVVMHTFGGYANSK ISTNGSFIRLIDAFKGVVMHTFGGYANSKA KGVVMHTFGGYANSKAVTLEASFTPDSQFI K G V S K A 1 0 1 0 0 0 0 3 1 0 0 1 1 1 0 1 1 0 1 2 0 0 14 0 1466.6976 Q6UXN9 Q6UXN9 226 239 WDR82 WD repeat-containing protein 82 yes yes 2;3 1.2083E-16 188.99 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 6 4 1 1 1.1218 1.0036 45.308 18 Median 1.1507 1.0489 32.256 4 0 Median 1.306 1.0981 5.761 2 0 Median 0.82701 0.78824 60.767 6 0 Median 1.269 1.0652 5.8052 4 2 Median 0.72184 0.74292 NaN 1 0 Median 1.5205 1.2754 NaN 1 0 Median 124770000 61317000 63456000 39766000 18010000 21757000 6368900 2975600 3393300 49021000 27134000 21887000 28142000 12427000 15714000 711450 406370 305080 763280 363530 399760 12743 3190 13255;13256 64642;64643;64644;64645;64646;64647;64648;64649;64650;64651;64652;64653;64654;64655;64656;64657;64658;64659 64959;64960;64961;64962;64963;64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974 64961 1681 16 GVVPLAGTDGETTTQGLDGLSER TIQDKGIVVGIKVDKGVVPLAGTDGETTTQ DGETTTQGLDGLSERCAQYKKDGADFAKWR K G V E R C 1 1 0 2 0 1 2 5 0 0 3 0 0 0 1 1 4 0 0 2 0 0 23 0 2272.1183 J3KSV6;J3QKP5;A8MVZ9;P09972;C9J8F3;K7EKH5 J3KSV6 112 134 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 2;3 2.4171E-34 130.06 By MS/MS By MS/MS By MS/MS By matching 4 4 3 3 0.98534 0.91069 10.63 14 Median 1.0157 1.0164 8.0869 4 0 Median 0.9937 0.86033 3.4413 4 0 Median 0.99602 1.0903 12.136 3 0 Plateau 1.0375 0.89663 12.454 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143770000 70600000 73169000 80167000 38590000 41577000 18138000 8822700 9315500 44282000 22694000 21589000 1182000 493750 688220 0 0 0 0 0 0 12744 546 13257 64660;64661;64662;64663;64664;64665;64666;64667;64668;64669;64670;64671;64672;64673 64975;64976;64977;64978;64979;64980;64981;64982;64983;64984;64985;64986;64987;64988;64989;64990;64991;64992;64993;64994 64975 20 GVVPLAGTNGETTTQGLDGLSER VIKSKGGVVGIKVDKGVVPLAGTNGETTTQ NGETTTQGLDGLSERCAQYKKDGADFAKWR K G V E R C 1 1 1 1 0 1 2 5 0 0 3 0 0 0 1 1 4 0 0 2 0 0 23 0 2271.1343 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 J3KPS3 112 134 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 1.5919E-37 157.68 By MS/MS By MS/MS By matching 3 3 1 0.99854 0.9729 13.255 7 Median 0.97023 0.96268 2.6123 3 1 Median NaN NaN NaN 0 0 Median 0.99854 1.0921 16.081 3 1 Median 1.0604 0.89163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138030000 64596000 73430000 96792000 44554000 52239000 0 0 0 40928000 19901000 21027000 306150 142140 164010 0 0 0 0 0 0 12745 1310 13258 64674;64675;64676;64677;64678;64679;64680 64995;64996;64997;64998;64999;65000;65001 64997 7 GVVQELQQAISK VVRIASLEVENQSLRGVVQELQQAISKLEA SLRGVVQELQQAISKLEARLNVLEKSSPGH R G V S K L 1 0 0 0 0 3 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1298.7194 E9PL71;E9PN91;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7 P29692 96 107 EEF1D Elongation factor 1-delta no no 2 1.1758E-09 176.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 6 2 3 1.238 1.087 16.488 22 Median 1.2068 1.1221 10.394 3 0 Median 1.1968 1.0015 30.417 3 0 Median 1.2844 1.2319 13.405 5 0 Median 1.2447 1.0726 6.3504 6 0 Median 1.2932 1.306 3.2265 2 1 Median 1.2337 0.98327 5.7247 3 0 Median 1136000000 493580000 642460000 139070000 61558000 77511000 45539000 20728000 24811000 217890000 88088000 129800000 598360000 262720000 335640000 27846000 11632000 16214000 107340000 48854000 58487000 12746 985;2174;957 13259 64681;64682;64683;64684;64685;64686;64687;64688;64689;64690;64691;64692;64693;64694;64695;64696;64697;64698;64699;64700;64701;64702 65002;65003;65004;65005;65006;65007;65008;65009;65010;65011;65012;65013;65014;65015;65016;65017;65018;65019;65020;65021;65022;65023;65024 65022 23 GVVQLFNAVQK QDKETERNLQRIATRGVVQLFNAVQKHQKN IATRGVVQLFNAVQKHQKNVDEKVKEAGSS R G V Q K H 1 0 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 11 0 1201.6819 Q9Y3B9 Q9Y3B9 169 179 RRP15 RRP15-like protein yes yes 2 0.00091005 61.962 By MS/MS By matching By matching By MS/MS By matching 2 1 3 4 2 1.3856 1.1905 33.759 12 Median 0.95813 0.93679 64.79 2 0 Median NaN NaN NaN 0 0 Median 1.3823 1.4761 NaN 1 0 Median 2.1637 1.8079 29.134 3 0 Median 1.1556 1.1532 22.036 4 0 Median 1.4412 1.2184 6.031 2 0 Median 48613000 22397000 26216000 2127200 893560 1233600 0 0 0 4114100 1597100 2517000 588560 205350 383210 41060000 19413000 21647000 722630 287180 435450 12747 4417 13260 64703;64704;64705;64706;64707;64708;64709;64710;64711;64712;64713;64714 65025;65026;65027;65028;65029;65030 65028 6 GVVSGEVER SHLLETLLCKHPNMKGVVSGEVERLLFRSN KHPNMKGVVSGEVERLLFRSNISSKAQYYA K G V E R L 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 3 0 0 9 0 930.47706 Q03701 Q03701 418 426 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.01817 41.029 By MS/MS 1 1.0709 1.1687 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0709 1.1687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1954300 952770 1001500 0 0 0 0 0 0 1954300 952770 1001500 0 0 0 0 0 0 0 0 0 12748 2710 13261 64715 65031 65031 1 GVVTAEMFR LLDLINFFIQCSGCKGVVTAEMFRHMQNSE QCSGCKGVVTAEMFRHMQNSEIIRKMTEEF K G V F R H 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 2 0 0 9 0 1008.5063 Q8N3U4;B1AMT4;B1AMT2;B1AMT3;B1AMT1 Q8N3U4 129 137 STAG2 Cohesin subunit SA-2 yes no 2 0.00045508 96.253 By MS/MS By MS/MS 1 1 0.30625 0.29553 141.18 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72948 0.80198 NaN 1 1 Median 0.12857 0.1089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28180000 19598000 8582000 0 0 0 0 0 0 16886000 9629400 7256300 11294000 9968700 1325700 0 0 0 0 0 0 12749 3369 13262 64716;64717 65032;65033 65032 2 GVVVVIK IHRKTVGVEPAADGKGVVVVIKRRSGRKSG VEPAADGKGVVVVIKRRSGRKSGNCHRGGH K G V I K R 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 4 0 0 7 0 712.48471 H0YMF4;H0YKD8;P46779 H0YMF4 59 65 RPL28 60S ribosomal protein L28 yes no 1 0.017191 39.975 By matching By matching By MS/MS 1 1 2 1.36 1.1497 13.735 4 Median 1.1611 1.0911 NaN 1 0 Median 1.2154 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6061 1.3108 11.155 2 0 Median 60662000 26467000 34195000 40458000 17976000 22482000 11628000 5213000 6415000 0 0 0 0 0 0 0 0 0 8575200 3277300 5297900 12750 1191 13263 64718;64719;64720;64721 65034 65034 1 GVVVVIKR IHRKTVGVEPAADGKGVVVVIKRRSGRKSG EPAADGKGVVVVIKRRSGRKSGNCHRGGHP K G V K R R 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 4 0 0 8 1 868.58582 H0YMF4;H0YKD8;P46779 H0YMF4 59 66 RPL28 60S ribosomal protein L28 yes no 2 0.0043034 133.99 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.2144 1.2003 16.452 5 Median 1.2139 1.2003 NaN 1 0 Median 1.1668 1.0598 9.7394 2 0 Median 1.2853 1.3148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9215 1.5369 NaN 1 0 Median 19248000 8265600 10982000 8115600 3280300 4835400 9283800 4246800 5037000 937720 383150 554570 0 0 0 0 0 0 910760 355370 555390 12751 1191 13264 64722;64723;64724;64725;64726 65035;65036;65037;65038;65039;65040 65036 6 GVWRPPLVDNPNYQGIWSPR CGEWKPPMIDNPKYKGVWRPPLVDNPNYQG PLVDNPNYQGIWSPRKIPNPDYFEDDHPFL K G V P R K 0 2 2 1 0 1 0 2 0 1 1 0 0 0 4 1 0 2 1 2 0 0 20 1 2350.1971 O14967 O14967 370 389 CLGN Calmegin yes yes 3 0.0027254 36.856 By MS/MS 1 0.5166 0.52967 NaN 1 Median 0.5166 0.52967 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2396600 1587900 808700 2396600 1587900 808700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12752 1507 13265 64727 65041 65041 1 GVWSELSK EERVQVALEELQDLKGVWSELSKVWEQIDQ EELQDLKGVWSELSKVWEQIDQMKEQPWVS K G V S K V 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 2 0 1 0 1 0 0 8 0 904.46543 Q14204 Q14204 1331 1338 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0048474 86.472 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2576 1.1773 8.5234 5 Median 1.1749 1.1773 NaN 1 1 Median 1.5435 1.3728 NaN 1 1 Median 1.0552 1.1264 NaN 1 0 Median 1.2576 1.229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2905 1.1104 NaN 1 0 Median 50662000 22410000 28252000 12164000 5610800 6552900 14945000 5342600 9602900 18441000 9108100 9332700 4509000 2071000 2437900 0 0 0 603420 277410 326010 12753 2865 13266 64728;64729;64730;64731;64732 65042;65043;65044;65045;65046 65042 5 GVWSMPSK FNQLPVELKKEVEMKGVWSMPSKYSEEGVY KKEVEMKGVWSMPSKYSEEGVYNVQYSFIK K G V S K Y 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 2 0 1 0 1 0 0 8 0 890.43202 Q9NUJ1 Q9NUJ1 201 208 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2 0.040551 36.76 By MS/MS By matching 1 1 1.0646 0.95886 32.549 2 Median NaN NaN NaN 0 0 Median 1.4123 1.207 NaN 1 0 Median 0.80246 0.76173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4958900 2571400 2387500 0 0 0 1053400 434210 619180 3905500 2137200 1768300 0 0 0 0 0 0 0 0 0 12754 4115 13267 64733;64734 65047 65047 1 GVWSTLPVNEK IKSNNHENVSLAKAKGVWSTLPVNEKKLNL AKAKGVWSTLPVNEKKLNLAFRSARSVILI K G V E K K 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 1 1 1 0 2 0 0 11 0 1228.6452 Q96MU7;J3QR07 Q96MU7 375 385 YTHDC1 YTH domain-containing protein 1 yes no 2 0.00071474 64.04 By MS/MS By MS/MS By matching 1 2 2 0.80862 0.82413 12.058 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64225 0.70928 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76686 0.75572 12.254 2 0 Median 1.0513 0.8797 6.7284 2 0 Median 27398000 14537000 12861000 0 0 0 0 0 0 4750000 2670400 2079600 0 0 0 20215000 10732000 9482900 2433700 1134800 1298900 12755 1347 13268 64735;64736;64737;64738;64739 65048;65049;65050;65051 65050 4 GVWTTDRDSNEILR G V L R 0 2 1 2 0 0 1 1 0 1 1 0 0 0 0 1 2 1 0 1 0 0 14 1 1660.8169 REV__Q9UPN3 yes no 3 0.06722 11.915 By MS/MS 1 0.62588 0.68785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62588 0.68785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4320100 2579000 1741100 0 0 0 0 0 0 4320100 2579000 1741100 0 0 0 0 0 0 0 0 0 + 12756 4524 13269 64740 65052 65052 1 GVYPDLLATSGDYLR HPYPTTKLMWIPDTKGVYPDLLATSGDYLR GVYPDLLATSGDYLRVWRVGETETRLECLL K G V L R V 1 1 0 2 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 15 0 1638.8253 P61962 P61962 82 96 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 2 0.00034792 60.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.90576 0.94512 11.279 7 Median 0.90576 0.89958 NaN 1 0 Median 1.1753 1.0139 NaN 1 0 Median 0.80442 0.83336 7.1664 2 0 Median NaN NaN NaN 0 0 Median 0.97502 0.99506 7.2812 2 0 Median 1.2419 1.0948 NaN 1 0 Median 20573000 10932000 9640700 7514000 3922400 3591600 992240 566290 425940 9397900 4962800 4435000 0 0 0 2529200 1416600 1112600 139890 64355 75540 12757 2563 13270 64741;64742;64743;64744;64745;64746;64747 65053;65054;65055;65056;65057;65058;65059;65060;65061;65062 65054 10 GVYQELPNSDPADPNSDPADLIFQK KPKILEEGPFHKIHKGVYQELPNSDPADPN PADPNSDPADLIFQKDYLEYGEILPFPESQ K G V Q K D 2 0 2 4 0 2 1 1 0 1 2 1 0 1 4 2 0 0 1 1 0 0 25 0 2729.2821 Q7Z7L1 Q7Z7L1 172 196 SLFN11 Schlafen family member 11 yes yes 3 0.062556 6.4334 By MS/MS By MS/MS 1 1 0.5116 0.53703 3.3193 2 Median 0.52419 0.52457 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49932 0.54978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5769100 3854900 1914200 1850800 1161300 689500 0 0 0 3918300 2693600 1224700 0 0 0 0 0 0 0 0 0 12758 3262 13271 64748;64749 65063;65064;65065 65063 3 GVYSEETLR TQALTAAIPPESLTRGVYSEETLRARFYAV PESLTRGVYSEETLRARFYAVQKLARRVAM R G V L R A 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1052.5138 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 624 632 IMMT MICOS complex subunit MIC60 yes no 2 5.3568E-05 122.13 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.3582 1.0983 76.349 5 Median 0.98545 0.932 NaN 1 0 Median 0.20668 0.20449 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4122 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3806 1.1558 7.2197 2 1 Median 40206000 21245000 18960000 22276000 10980000 11295000 6122800 5559100 563680 0 0 0 841830 342470 499360 0 0 0 10966000 4363400 6602200 12759 3001 13272 64750;64751;64752;64753;64754 65066;65067;65068 65068 3 GVYVLMSGLDLER DCKIPAANILGHENKGVYVLMSGLDLERLV NKGVYVLMSGLDLERLVLAGGPLGLMQAVL K G V E R L 0 1 0 1 0 0 1 2 0 0 3 0 1 0 0 1 0 0 1 2 0 0 13 0 1450.749 A0A0S2Z4K7;A0A0A0MT83;P26440;H0YLC3;H7C4G6 A0A0S2Z4K7 242 254 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2 9.8823E-07 158.79 By matching By MS/MS 1 1 1.1835 1.1193 11.539 2 Median 1.0065 1.0316 NaN 1 0 Median 1.3917 1.2144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7875700 3159000 4716700 597890 324390 273500 7277800 2834600 4443200 0 0 0 0 0 0 0 0 0 0 0 0 12760 187 13273 64755;64756 65069;65070 65070 2 GWAAAVTFHPR FVGGFSYADVLGSAKGWAAAVTFHPRAGAE GSAKGWAAAVTFHPRAGAELRRFRKRPDTF K G W P R A 3 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 1 0 1 0 0 11 0 1211.62 O15067;H0YGH1 O15067 1128 1138 PFAS Phosphoribosylformylglycinamidine synthase yes no 3 0.011224 42.243 By MS/MS By matching 2 1 0.86876 0.84951 8.4196 3 Median 0.85455 0.83991 1.6061 2 1 Median 1.1023 0.97049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6426000 3435400 2990600 5428800 2961800 2467100 997180 473600 523580 0 0 0 0 0 0 0 0 0 0 0 0 12761 1518 13274 64757;64758;64759 65071;65072 65072 2 GWAPVFLDR RMLGAQGRAVHQCDRGWAPVFLDREQSISL VHQCDRGWAPVFLDREQSISLMSVGFLLEK R G W D R E 1 1 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 1 0 0 9 0 1059.5502 Q9Y5Y2;H3BNF0;H3BNS4;H3BQR2;H3BRE1 Q9Y5Y2 75 83 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.0073226 51.854 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.98301 0.87085 6.9157 5 Median 0.89347 0.85605 2.4234 2 0 Median 0.98301 0.83572 NaN 1 0 Median 1.06 0.99173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1013 0.89309 NaN 1 0 Median 12163000 6451400 5711100 8452800 4589200 3863600 1439600 793460 646130 1279800 523210 756600 0 0 0 0 0 0 990320 545500 444820 12762 4472 13275 64760;64761;64762;64763;64764 65073;65074;65075;65076 65076 4 GWAQLTDK AGRLMRAIFEIVLNRGWAQLTDKTLNLCKM FEIVLNRGWAQLTDKTLNLCKMIDKRMWQS R G W D K T 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 917.46068 O75643;A0A494C1A5 O75643 1103 1110 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0034636 94.662 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2268 1.1152 4.2332 4 Median NaN NaN NaN 0 0 Median 1.2502 1.1106 NaN 1 0 Median 1.0828 1.1997 NaN 1 0 Median 1.2038 1.0882 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3068 1.1199 NaN 1 0 Median 15853000 7450800 8402700 0 0 0 3074500 1435200 1639300 8433600 4042000 4391600 2772400 1268300 1504100 0 0 0 1572900 705260 867620 12763 1688 13276 64765;64766;64767;64768 65077;65078;65079 65077 3 GWDDLFNK ELDLVNYQNKCRLIRGWDDLFNKVKEHINS NKCRLIRGWDDLFNKVKEHINSVSAMKLSP R G W N K V 0 0 1 2 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 8 0 993.4556 Q14204 Q14204 1489 1496 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.010382 58.981 By MS/MS By matching By MS/MS By matching 2 2 2 2 1.1293 1.0771 12.496 8 Median 0.91709 0.89423 12.441 2 0 Median 1.2111 1.0528 4.3639 2 0 Median 1.0648 1.1592 6.1021 2 0 Median 1.219 1.1302 7.9274 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28603000 13530000 15073000 9085700 4353400 4732200 3178700 1353200 1825500 14913000 7203000 7710000 1425500 620520 804980 0 0 0 0 0 0 12764 2865 13277 64769;64770;64771;64772;64773;64774;64775;64776 65080;65081;65082;65083 65080 4 GWDDLFNKVK ELDLVNYQNKCRLIRGWDDLFNKVKEHINS CRLIRGWDDLFNKVKEHINSVSAMKLSPYY R G W V K E 0 0 1 2 0 0 0 1 0 0 1 2 0 1 0 0 0 1 0 1 0 0 10 1 1220.619 Q14204 Q14204 1489 1498 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 0.022812 51.854 By MS/MS By MS/MS 1 2 1.1663 1.3243 22.107 3 Plateau 0.94083 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1663 1.3243 22.807 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13611000 5571500 8039800 3137300 1601900 1535400 0 0 0 10474000 3969600 6504500 0 0 0 0 0 0 0 0 0 12765 2865 13278 64777;64778;64779 65084;65085;65086;65087 65085 4 GWDEALLTMSK AKPLSFKVGVGKVIRGWDEALLTMSKGEKA KVIRGWDEALLTMSKGEKARLEIEPEWAYG R G W S K G 1 0 0 1 0 0 1 1 0 0 2 1 1 0 0 1 1 1 0 0 0 0 11 0 1249.6013 Q00688 Q00688 174 184 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.0015968 61.65 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 3 2 3 1 1 1.1805 1.0098 24.713 13 Median 1.155 1.0766 48.275 3 0 Median 1.2873 1.0913 7.9066 3 0 Median 1.0099 0.94693 0.081465 2 0 Median 1.1851 1.0098 4.9238 3 0 Median 0.89868 0.91618 NaN 1 0 Median 1.0098 0.85711 NaN 1 0 Median 104010000 51298000 52708000 40069000 20042000 20026000 3686800 1598000 2088900 51616000 25549000 26067000 6485100 2899900 3585200 1996300 1139900 856400 153320 68799 84518 12766 2677 13279;13280 64780;64781;64782;64783;64784;64785;64786;64787;64788;64789;64790;64791;64792 65088;65089;65090;65091;65092;65093;65094;65095 65095 1353 7 GWDENVYYTVPLVR LQSREETRNAAWRKRGWDENVYYTVPLVRH RGWDENVYYTVPLVRHMESRIMIPLKISPL R G W V R H 0 1 1 1 0 0 1 1 0 0 1 0 0 0 1 0 1 1 2 3 0 0 14 0 1709.8413 Q9BPW8 Q9BPW8 255 268 NIPSNAP1 Protein NipSnap homolog 1 yes yes 2 0.054664 23.851 By MS/MS 1 1.3662 1.1614 NaN 1 Median NaN NaN NaN 0 0 Median 1.3662 1.1614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1455400 579100 876320 0 0 0 1455400 579100 876320 0 0 0 0 0 0 0 0 0 0 0 0 12767 3777 13281 64793 65096 65096 1 GWDQGLLGMCEGEK NQPFVFSLGTGQVIKGWDQGLLGMCEGEKR KGWDQGLLGMCEGEKRKLVIPSELGYGERG K G W E K R 0 0 0 1 1 1 2 4 0 0 2 1 1 0 0 0 0 1 0 0 0 0 14 0 1578.6807 A0A494C1N0;P26885 A0A494C1N0 117 130 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes no 2 0.00081363 59.542 By MS/MS 2 1.0915 1.1056 13.624 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0915 1.1056 13.624 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2477100 1110200 1367000 0 0 0 0 0 0 2477100 1110200 1367000 0 0 0 0 0 0 0 0 0 12768 472 13282 64794;64795 65097 65097 1 GWEEGVAQMSVGQR NKPFKFMLGKQEVIRGWEEGVAQMSVGQRA RGWEEGVAQMSVGQRAKLTISPDYAYGATG R G W Q R A 1 1 0 0 0 2 2 3 0 0 0 0 1 0 0 1 0 1 0 2 0 0 14 0 1532.7042 P62942;Q5W0X3;Q1JUQ5 P62942 59 72 FKBP1A;FKBP12-Exip2 Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase yes no 2;3 1.213E-08 148.19 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 4 1 1 1.1488 1.0963 11.604 13 Median 1.0563 1.025 9.5213 4 0 Median 1.278 1.0928 4.5208 3 0 Median 1.1539 1.1642 0.2431 4 2 Linear 1.3665 1.0854 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9029 1.4786 NaN 1 0 Median 320460000 142330000 178130000 87473000 40605000 46868000 120420000 51512000 68906000 111770000 49878000 61889000 467530 213940 253590 0 0 0 333420 119640 213770 12769 2612 13283;13284 64796;64797;64798;64799;64800;64801;64802;64803;64804;64805;64806;64807;64808 65098;65099;65100;65101;65102;65103;65104;65105;65106;65107;65108;65109;65110;65111;65112;65113;65114;65115;65116;65117;65118;65119 65105 1277 22 GWENHVEGQK QLTAYMKRVEDVLGKGWENHVEGQKLKQDG DVLGKGWENHVEGQKLKQDGDSFRMKLNTQ K G W Q K L 0 0 1 0 0 1 2 2 1 0 0 1 0 0 0 0 0 1 0 1 0 0 10 0 1182.5418 Q14204 Q14204 672 681 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0034408 56.729 By matching By MS/MS By matching 1 1 1 1.0987 0.95893 25.1 3 Median 0.92619 0.92113 NaN 1 0 Median 1.0987 0.95893 NaN 1 0 Median 1.3144 1.4496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4940900 2357800 2583100 1074800 587360 487470 2797700 1284700 1513000 1068300 485690 582620 0 0 0 0 0 0 0 0 0 12770 2865 13285 64809;64810;64811 65120;65121 65121 2 GWFDAEGQALDGVSISDLK TIIANPDIPEAYKLRGWFDAEGQALDGVSI AEGQALDGVSISDLKSGGVGGSNTNWKTLY R G W L K S 2 0 0 3 0 1 1 3 0 1 2 1 0 1 0 2 0 1 0 1 0 0 19 0 2006.9585 P27694;I3L4R8 P27694 413 431 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.00084992 36.284 By matching By MS/MS By matching 1 1 1 1.0296 0.93608 37.165 3 Median 0.96966 0.93608 NaN 1 0 Median 1.0296 0.88859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8058 1.7334 NaN 1 0 Median NaN NaN NaN 0 0 Median 5194400 2319900 2874500 2198000 1144000 1054000 1320300 610880 709380 0 0 0 0 0 0 1676100 565070 1111100 0 0 0 12771 2156 13286 64812;64813;64814 65122;65123 65123 2 GWGLLGPR DAERQAAAAACQLFKGWGLLGPRNELFDAA AACQLFKGWGLLGPRNELFDAAKYRVLADR K G W P R N 0 1 0 0 0 0 0 3 0 0 2 0 0 0 1 0 0 1 0 0 0 0 8 0 854.47627 H7BXY3;Q7L2E3 H7BXY3 95 102 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.018086 48.174 By matching By matching By matching By MS/MS By matching 1 1 1 3 1 1.1437 1.0301 18.736 7 Median 1.0189 1.0301 NaN 1 0 Median 1.0773 0.95192 NaN 1 0 Median 1.2396 1.3285 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2673 1.3111 23.181 3 0 Median 1.1437 0.96855 NaN 1 0 Median 4201800 2110000 2091800 781610 404500 377100 519560 260550 259010 664630 365940 298690 0 0 0 2154000 1043200 1110800 82034 35849 46184 12772 1244 13287 64815;64816;64817;64818;64819;64820;64821 65124 65124 1 GWIDLQR LKAPMILNGVCVIWKGWIDLQRLDGMGCLE NGVCVIWKGWIDLQRLDGMGCLEFDEERAQ K G W Q R L 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 7 0 886.4661 Q13951;A0A494C0A9;J3KS23;H3BSC0 Q13951 112 118 CBFB Core-binding factor subunit beta yes no 2 0.050767 52.683 By MS/MS 1 1.0406 0.98616 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0406 0.98616 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2638500 1175300 1463200 0 0 0 0 0 0 2638500 1175300 1463200 0 0 0 0 0 0 0 0 0 12773 2848 13288 64822 65125 65125 1 GWIDWAASK LVEGLVLINVDPCAKGWIDWAASKLSGLTT VDPCAKGWIDWAASKLSGLTTNVVDIILAH K G W S K L 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 1 0 2 0 0 0 0 9 0 1032.5029 Q9UGV2;F8WBF9;Q5TH30;Q5TH29 Q9UGV2 169 177 NDRG3 Protein NDRG3 yes no 2 0.0098224 48.794 By MS/MS By matching By matching 3 1 2 1.3087 1.0926 24.791 6 Median 1.1047 1.0314 22.377 3 0 Median 1.1625 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8075 1.4517 32.036 2 0 Median 10800000 4795600 6004200 9385300 4200100 5185300 675710 310180 365530 0 0 0 0 0 0 0 0 0 738740 285320 453420 12774 4267 13289 64823;64824;64825;64826;64827;64828 65126 65126 1 GWLRDPSASPGDAGEQAIR KRALASIDSKLNQAKGWLRDPSASPGDAGE DPSASPGDAGEQAIRQILDEAGKVGELCAG K G W I R Q 3 2 0 2 0 1 1 3 0 1 1 0 0 0 2 2 0 1 0 0 0 0 19 1 1981.9606 P18206 P18206 282 300 VCL Vinculin yes yes 3 8.6898E-12 98.165 By matching By matching By MS/MS 1 1 1 0.84077 1.06 16.967 3 Plateau 1.0417 1.122 NaN 1 0 Median 0.84077 0.81058 NaN 1 0 Median 0.72085 0.87671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80796000 38964000 41832000 58754000 27467000 31287000 2444200 1174900 1269300 19597000 10322000 9275300 0 0 0 0 0 0 0 0 0 12775 2057 13290 64829;64830;64831 65127;65128 65128 2 GWLYYEAGQR PRTKTKMSAAQALKKGWLYYEAGQRFLEVQ QALKKGWLYYEAGQRFLEVQYLTGGLIEPD K G W Q R F 1 1 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 1 2 0 0 0 10 0 1241.5829 Q15149;H0YDN1 Q15149 4514 4523 PLEC Plectin yes no 2 0.00034763 84.476 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.3857 1.3202 22.796 6 Median 1.0313 1.0208 42.214 2 0 Median 1.5597 1.3202 0.77297 2 2 Median 1.2512 1.3336 NaN 1 0 Median 1.3819 1.2005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25908000 11585000 14323000 10461000 4884200 5577100 8398600 3467900 4930700 6519800 3034500 3485300 528850 198920 329930 0 0 0 0 0 0 12776 2933 13291 64832;64833;64834;64835;64836;64837 65129;65130;65131;65132;65133 65131 4 GWNILTNSEK KAPKVVAACAMPVMKGWNILTNSEKSKKAR MPVMKGWNILTNSEKSKKAREGVMEFLLAN K G W E K S 0 0 2 0 0 0 1 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 10 0 1160.5826 P28331;C9JPQ5 P28331 99 108 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.00033784 85.731 By MS/MS By MS/MS By matching 3 1 1 1.2121 1.2242 50.092 5 Median 1.2121 1.2242 64.462 3 0 Median NaN NaN NaN 0 0 Median 0.80191 0.8513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6612 1.3169 NaN 1 0 Median 13801000 6111900 7689200 10834000 4651000 6183200 0 0 0 2214700 1208500 1006100 0 0 0 0 0 0 752110 252280 499830 12777 2165 13292 64838;64839;64840;64841;64842 65134;65135;65136 65135 3 GWNWGTVK THYRLELMEKDLCVKGWNWGTVKFGGQLLS EKDLCVKGWNWGTVKFGGQLLSFDIGDQPV K G W V K F 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 2 0 1 0 0 8 0 946.4661 Q08945;E9PMD4;E9PPZ7 Q08945 106 113 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0042476 82.671 By matching By matching By MS/MS By matching 1 1 4 4 1.4284 1.3159 17.992 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3076 1.3878 NaN 1 0 Median 1.8962 1.6827 NaN 1 0 Median 1.3127 1.3426 20.919 4 0 Median 1.4933 1.2437 13.793 4 0 Median 25884000 11071000 14813000 0 0 0 0 0 0 2332700 962830 1369800 233790 64119 169670 16932000 7401600 9530600 6385300 2642300 3743000 12778 2743 13293 64843;64844;64845;64846;64847;64848;64849;64850;64851;64852 65137;65138;65139 65137 3 GWPEVWAGSVGR FKKGDPVYVYYKLARGWPEVWAGSVGRTFG LARGWPEVWAGSVGRTFGYFPKDLIQVVHE R G W G R T 1 1 0 0 0 0 1 3 0 0 0 0 0 0 1 1 0 2 0 2 0 0 12 0 1299.636 Q5JRA6 Q5JRA6 81 92 MIA3 Melanoma inhibitory activity protein 3 yes yes 2 0.03764 26.673 By MS/MS By matching 1 1 0.99926 0.94098 7.3112 2 Median 0.99037 0.99091 NaN 1 0 Median 1.0082 0.89357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2478500 1261000 1217500 2110200 1092200 1018000 368350 168770 199580 0 0 0 0 0 0 0 0 0 0 0 0 12779 3049 13294 64853;64854 65140 65140 1 GWQDVTATSAYK LGINSLQELKQNIAKGWQDVTATSAYKKTS IAKGWQDVTATSAYKKTSETLSQAGQKASA K G W Y K K 2 0 0 1 0 1 0 1 0 0 0 1 0 0 0 1 2 1 1 1 0 0 12 0 1325.6252 H0YC42;P55327 H0YC42 126 137 TPD52 Tumor protein D52 no no 2 0.0016474 80.763 By MS/MS 1 1.1486 1.0723 NaN 1 Median 1.1486 1.0723 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12447000 5363000 7084300 12447000 5363000 7084300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12780 1172;2499 13295 64855 65141 65141 1 GWQDVTATSAYKK LGINSLQELKQNIAKGWQDVTATSAYKKTS AKGWQDVTATSAYKKTSETLSQAGQKASAA K G W K K T 2 0 0 1 0 1 0 1 0 0 0 2 0 0 0 1 2 1 1 1 0 0 13 1 1453.7201 H0YC42;P55327 H0YC42 126 138 TPD52 Tumor protein D52 no no 2;3 1.8493E-06 114.83 By MS/MS By matching By matching 2 2 1 1.0414 1.035 21.083 5 Median 1.0302 1.0463 1.5441 2 0 Median 1.0046 0.92089 6.0444 2 0 Median 1.5019 1.53 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42984000 20730000 22254000 39156000 18739000 20417000 2861100 1573000 1288100 966460 418020 548440 0 0 0 0 0 0 0 0 0 12781 1172;2499 13296 64856;64857;64858;64859;64860 65142;65143;65144;65145 65145 4 GWQNSIR AHITKHYPYYRTADKGWQNSIRHNLSLNRY PYYRTADKGWQNSIRHNLSLNRYFIKVPRS K G W I R H 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 7 0 859.43005 P85037;P58012;Q01167;E9PM37;E9PPI7 P85037 348 354 FOXK1;FOXL2;FOXK2 Forkhead box protein K1;Forkhead box protein L2;Forkhead box protein K2 no no 2 0.051961 39.218 By MS/MS 1 1.6479 1.4135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6479 1.4135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 822690 230110 592580 0 0 0 0 0 0 0 0 0 822690 230110 592580 0 0 0 0 0 0 12782 2669;2684 13297 64861 65146 65146 1 GWSAHPGVVR EDVAAAVEAARMAFKGWSAHPGVVRAQHLT RMAFKGWSAHPGVVRAQHLTRLAEVIQKHQ K G W V R A 1 1 0 0 0 0 0 2 1 0 0 0 0 0 1 1 0 1 0 2 0 0 10 0 1064.5516 Q8IZ83 Q8IZ83 92 101 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes yes 2 0.0095388 45.081 By MS/MS 1 1.0839 1.074 NaN 1 Median 1.0839 1.074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1653300 792650 860680 1653300 792650 860680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12783 3348 13298 64862 65147 65147 1 GWSMSEQSEESVGGR TSVKSPKTVSPPIRKGWSMSEQSEESVGGR GWSMSEQSEESVGGRVAERKQVENAKASKK K G W G R V 0 1 0 0 0 1 3 3 0 0 0 0 1 0 0 4 0 1 0 1 0 0 15 0 1624.6787 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 615 629 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.013497 59.542 By MS/MS By matching By matching 1 1 1 0.91876 0.9405 10.376 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88442 0.9505 NaN 1 0 Median 0.91876 0.79014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1185 0.9405 NaN 1 0 Median 4368500 2482500 1886000 0 0 0 0 0 0 3073300 1837700 1235600 1057300 546990 510280 0 0 0 237910 97808 140100 12784 4273 13299 64863;64864;64865 65148 65148 0 GWSQDLFR ______________________________ ______________________________ M G W F R A 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 8 0 1007.4825 Q8N183;D6RA56 Q8N183 2 9 NDUFAF2 Mimitin, mitochondrial yes no 2 0.0069954 68.915 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.4295 1.2662 11.263 6 Median 1.1366 1.0878 12.229 2 0 Median 1.5836 1.326 1.6485 2 0 Median 1.2962 1.2233 NaN 1 0 Median 1.6215 1.3352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11526000 5108000 6418100 7434500 3425900 4008600 1351600 513240 838370 2179400 947170 1232200 560650 221690 338960 0 0 0 0 0 0 12785 3355 13300 64866;64867;64868;64869;64870;64871 65149;65150;65151;65152 65152 4 GWTGQESLSDSDPEMWELLQR QHSNAAQTQTGEANRGWTGQESLSDSDPEM SLSDSDPEMWELLQREKDRQCRGLELIASE R G W Q R E 0 1 0 2 0 2 3 2 0 0 3 0 1 0 1 3 1 2 0 0 0 0 21 0 2463.1013 P34897;G3V5L0;G3V4W5;G3V540;G3V241;G3V3Y8;G3V4T0;G3V4X0;G3V2W0;G3V2E4;G3V2Y1;G3V3C6 P34897 42 62 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 2;3 0.02551 18.731 By matching By MS/MS 2 2 0.95249 0.89818 26.161 4 Median NaN NaN NaN 0 0 Median 1.226 1.0929 0.30899 2 0 Median 0.70287 0.69955 7.9024 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3178200 1684200 1494000 0 0 0 529650 233000 296650 2648600 1451200 1197400 0 0 0 0 0 0 0 0 0 12786 2228 13301 64872;64873;64874;64875 65153;65154 65154 2 GWVHDSIDYR YWLFSDEVPGLFIEKGWVHDSIDYRFNHHC LFIEKGWVHDSIDYRFNHHCKDHTVSGDED K G W Y R F 0 1 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 1 1 1 0 0 10 0 1246.5731 Q9UIG0 Q9UIG0 927 936 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.0028095 71.692 By MS/MS By MS/MS 1 1 0.57359 0.61215 23.03 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4714 0.52016 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.69792 0.72042 NaN 1 1 Median NaN NaN NaN 0 0 Median 13041000 7643600 5397900 0 0 0 0 0 0 4642600 2883900 1758700 0 0 0 8398900 4759700 3639200 0 0 0 12787 4290 13302 64876;64877 65155;65156 65156 2 GWVLGPNNYYSFASQQQKPEDTTIPSTELAK FFNTPKKMTDYAKKRGWVLGPNNYYSFASQ QKPEDTTIPSTELAKQVIEYARQLEMIV__ R G W A K Q 2 0 2 1 0 3 2 2 0 1 2 2 0 1 3 3 3 1 2 1 0 0 31 1 3468.6838 R4GMR5;P48556 R4GMR5 244 274 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 3 0.054318 9.7116 By MS/MS By matching 1 1 0.76147 0.76829 35.675 2 Median 0.61638 0.59699 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94071 0.98873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3081000 1772800 1308300 1540400 985340 555050 0 0 0 1540700 787450 753200 0 0 0 0 0 0 0 0 0 12788 2362 13303 64878;64879 65157 65157 1 GWVTFDR VALSEPQPERRFFRRGWVTFDRSVNIKEIC PERRFFRRGWVTFDRSVNIKEICWNLQNIR R G W D R S 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 7 0 879.4239 Q9BXP5;H7C3A1 Q9BXP5 465 471 SRRT Serrate RNA effector molecule homolog yes no 2 0.0083653 86.086 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2527 1.2172 12.203 5 Median 1.2209 1.2172 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.114 1.2084 18.199 2 0 Median 1.2768 1.0926 NaN 1 0 Median 1.2916 1.374 NaN 1 0 Median NaN NaN NaN 0 0 Median 10512000 4978800 5532700 1582600 768680 813940 0 0 0 6316400 2981500 3334900 693410 275660 417750 1919100 953030 966040 0 0 0 12789 3879 13304 64880;64881;64882;64883;64884 65158;65159;65160;65161 65159 4 GYAEVVVASENSVHK VELKFAENRANGQSKGYAEVVVASENSVHK GYAEVVVASENSVHKLLELLPGKVLNGEKV K G Y H K L 2 0 1 0 0 0 2 1 1 0 0 1 0 0 0 2 0 0 1 4 0 0 15 0 1587.7893 Q8N684;F5H669;F5H6M0;F5H047;J3QT54;C9J286;C9J323 Q8N684 126 140 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2;3 1.7952E-09 143.97 By matching By MS/MS By MS/MS By MS/MS By matching 2 4 6 2 1 1.174 1.0641 20.945 15 Median 0.8901 0.85807 6.4863 2 0 Median NaN NaN NaN 0 0 Median 1.1219 1.0769 27.199 4 0 Median 1.2494 1.0574 19.72 6 1 Median 1.2356 1.1778 13.324 2 0 Median 1.51 1.2476 NaN 1 0 Median 240460000 108790000 131670000 4729800 2171200 2558600 0 0 0 167960000 80632000 87324000 52121000 18642000 33479000 12297000 5994000 6303500 3354300 1349400 2004900 12790 3385 13305 64885;64886;64887;64888;64889;64890;64891;64892;64893;64894;64895;64896;64897;64898;64899 65162;65163;65164;65165;65166;65167;65168;65169;65170;65171;65172;65173;65174;65175;65176;65177 65169 16 GYAFIEFASFEDAK ATFIKVPQNQNGKSKGYAFIEFASFEDAKE KGYAFIEFASFEDAKEALNSCNKREIEGRA K G Y A K E 3 0 0 1 0 0 2 1 0 1 0 1 0 3 0 1 0 0 1 0 0 0 14 0 1593.7351 P19338;H7BY16 P19338 524 537 NCL Nucleolin yes no 2 8.2583E-06 91.855 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1.1156 0.99111 19.248 6 Median 0.98409 0.99118 NaN 1 0 Median 1.098 0.97296 2.6024 2 0 Median NaN NaN NaN 0 0 Median 1.1061 0.96963 NaN 1 0 Median 1.4046 1.4045 9.0915 2 1 Median NaN NaN NaN 0 0 Median 7041100 3155800 3885200 1450200 661180 788970 3213700 1432900 1780800 0 0 0 58202 25039 33163 2319000 1036700 1282300 0 0 0 12791 2063 13306 64900;64901;64902;64903;64904;64905 65178;65179;65180;65181 65180 4 GYAFIEYEHER KRIHMVYSKRSGKPRGYAFIEYEHERDMHS GKPRGYAFIEYEHERDMHSAYKHADGKKID R G Y E R D 1 1 0 0 0 0 3 1 1 1 0 0 0 1 0 0 0 0 2 0 0 0 11 0 1412.6361 P08621;M0QYR1 P08621 145 155 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2;3 4.3571E-08 135.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 7 5 4 6 1.0733 1.064 19.979 24 Median 1.0697 1.0193 NaN 1 0 Median 0.97236 0.84355 NaN 1 0 Median 1.0682 1.0655 18.513 7 3 Median 1.223 1.032 35.391 5 0 Median 1.0679 1.0902 8.8747 4 1 Median 1.3029 1.0747 14.381 6 1 Median 374350000 175720000 198630000 10314000 5509900 4804300 3757500 1918900 1838500 261550000 124780000 136760000 16828000 7553400 9274900 64768000 28442000 36327000 17138000 7518200 9619500 12792 1905 13307 64906;64907;64908;64909;64910;64911;64912;64913;64914;64915;64916;64917;64918;64919;64920;64921;64922;64923;64924;64925;64926;64927;64928;64929 65182;65183;65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197;65198;65199;65200;65201;65202;65203;65204;65205;65206 65187 25 GYAFIEYEHERDMHSAYK KRIHMVYSKRSGKPRGYAFIEYEHERDMHS FIEYEHERDMHSAYKHADGKKIDGRRVLVD R G Y Y K H 2 1 0 1 0 0 3 1 2 1 0 1 1 1 0 1 0 0 3 0 0 0 18 1 2244.9899 P08621 P08621 145 162 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 4 7.2695E-05 42.813 By MS/MS By matching 1 1 1.0851 1.0438 9.2021 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0946 1.114 NaN 1 0 Median 1.0757 0.97805 NaN 1 0 Median 29752000 14516000 15236000 0 0 0 0 0 0 0 0 0 0 0 0 27793000 13617000 14176000 1959300 898760 1060600 12793 1905 13308 64930;64931 65207;65208 65208 2 GYAFITFCGK WDLRLMMDPLSGQNRGYAFITFCGKEAAQE SGQNRGYAFITFCGKEAAQEAVKLCDSYEI R G Y G K E 1 0 0 0 1 0 0 2 0 1 0 1 0 2 0 0 1 0 1 0 0 0 10 0 1162.5481 O43390;B4DT28 O43390 207 216 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00076705 71.501 By MS/MS By matching 3 1 0.92971 0.93076 13.737 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97514 0.96505 7.4493 3 0 Median 0.8864 0.75541 NaN 1 0 Median 30369000 15075000 15295000 0 0 0 0 0 0 0 0 0 0 0 0 29898000 14907000 14990000 471920 167120 304800 12794 1568 13309 64932;64933;64934;64935 65209;65210;65211 65211 3 GYAFNHSADFETVR GRDITRYLIKLLLLRGYAFNHSADFETVRM RGYAFNHSADFETVRMIKEKLCYVGYNIEQ R G Y V R M 2 1 1 1 0 0 1 1 1 0 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1612.727 P61160;F5H6T1 P61160 201 214 ACTR2 Actin-related protein 2 yes no 2;3 2.3403E-11 177.76 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.2276 1.1497 6.0872 9 Median 1.1586 1.166 0.3969 2 0 Median 1.2839 1.1165 5.3705 3 0 Median 1.1156 1.2251 1.0685 2 0 Median 1.2982 1.0995 6.321 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 358770000 162020000 196750000 185980000 84005000 101970000 11570000 4723700 6845900 143430000 66184000 77249000 17790000 7108300 10682000 0 0 0 0 0 0 12795 2546 13310 64936;64937;64938;64939;64940;64941;64942;64943;64944 65212;65213;65214;65215;65216;65217;65218;65219;65220;65221;65222;65223;65224;65225;65226 65219 15 GYAFVHFETQEAADKAIEK NILSCKVVCDENGSKGYAFVHFETQEAADK VHFETQEAADKAIEKMNGMLLNDRKVFVGR K G Y E K M 4 0 0 1 0 1 3 1 1 1 0 2 0 2 0 0 1 0 1 1 0 0 19 1 2153.0429 B1ANR0;Q13310;H0YCC8;H0YEQ8;H0Y5F5 B1ANR0 139 157 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 3 3.3245E-09 85.563 By MS/MS 1 1.2411 1.2758 NaN 1 Median 1.2411 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10450000 4521100 5929100 10450000 4521100 5929100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12796 576;1151 13311 64945 65227;65228 65227 2 GYAFVQYSNER IFSKYGRVAGCSVHKGYAFVQYSNERHARA SVHKGYAFVQYSNERHARAAVLGENGRVLA K G Y E R H 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 11 0 1332.6099 Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2 Q9UKM9 56 66 RALY RNA-binding protein Raly yes no 2 0.00011186 138.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 7 7 1.0451 0.9665 18.424 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9575 0.92971 NaN 1 0 Median 1.4848 1.2438 21.52 3 1 Median 0.96506 0.9665 4.8857 6 0 Median 1.0601 0.89994 12.891 6 0 Median 440560000 213410000 227150000 0 0 0 0 0 0 32142000 15317000 16825000 8177100 3507200 4669900 329090000 162020000 167070000 71148000 32562000 38586000 12797 4313 13312 64946;64947;64948;64949;64950;64951;64952;64953;64954;64955;64956;64957;64958;64959;64960;64961;64962;64963 65229;65230;65231;65232;65233;65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244;65245;65246;65247 65229 17 GYAVLGGER LNDIAAVPATAMPFRGYAVLGGERGGPEVQ TAMPFRGYAVLGGERGGPEVQQVPAGERPL R G Y E R G 1 1 0 0 0 0 1 3 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 920.47158 P49327;A0A0U1RQF0 P49327 469 477 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00048284 98.997 By MS/MS By MS/MS By MS/MS 4 6 1 1.4649 1.2057 16.803 10 Median 0.99909 0.96593 6.4955 4 2 Median 1.5031 1.2524 9.5146 5 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5998 1.3039 NaN 1 0 Median 133200000 54412000 78787000 33335000 14160000 19175000 98905000 39867000 59038000 0 0 0 0 0 0 0 0 0 958420 384650 573770 12798 2377 13313 64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974 65248;65249;65250;65251;65252;65253;65254;65255;65256;65257;65258 65254 10 GYAVNVFDIQQGFDNPQVR SGFLGQHMVEQLLARGYAVNVFDIQQGFDN NVFDIQQGFDNPQVRFFLGDLCSRQDLYPA R G Y V R F 1 1 2 2 0 3 0 2 0 1 0 0 0 2 1 0 0 0 1 3 0 0 19 0 2166.0494 Q15738;C9JDR0 Q15738 61 79 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes no 2;3 6.8183E-13 100.56 By MS/MS By matching 2 1 0.89932 0.89127 9.354 3 Plateau 0.89788 0.89456 0.52113 2 0 Median 0.87726 0.76085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8967300 4404800 4562400 8127300 3957100 4170200 840000 447750 392250 0 0 0 0 0 0 0 0 0 0 0 0 12799 2966 13314 64975;64976;64977 65259;65260;65261 65259 3 GYAYTFITEDQAR DYVHRAGRTGRAGNKGYAYTFITEDQARYA NKGYAYTFITEDQARYAGDIIKALELSGTA K G Y A R Y 2 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 13 0 1533.71 Q7L014;A0A0C4DG89 Q7L014 717 729 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 3.7596E-15 183.67 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 1.0493 0.95502 24.004 9 Median NaN NaN NaN 0 0 Median 0.81328 0.69558 NaN 1 0 Median 1.1682 1.2653 20.303 2 0 Median 1.0754 0.91673 9.6353 2 0 Median 1.0924 1.151 26.391 2 1 Median 1.0498 0.86155 0.29774 2 0 Median 54567000 23717000 30850000 0 0 0 2433600 1080200 1353400 45447000 19308000 26139000 1448100 713430 734710 4432700 2208200 2224500 805510 406830 398680 12800 3216 13315 64978;64979;64980;64981;64982;64983;64984;64985;64986 65262;65263;65264;65265;65266;65267 65262 6 GYAYVEFENPDEAEK MIDMPVERMHPHLSKGYAYVEFENPDEAEK GYAYVEFENPDEAEKALKHMDGGQIDGQEI K G Y E K A 2 0 1 1 0 0 4 1 0 0 0 1 0 1 1 0 0 0 2 1 0 0 15 0 1759.7577 H3BV80;H3BMM9;H3BTC0;Q15287;H3BMS0;H3BPG5 H3BV80 110 124 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2 1.6761E-09 143.79 By matching By MS/MS By matching By MS/MS By matching 1 2 1 4 2 0.91023 0.85642 12.699 10 Median NaN NaN NaN 0 0 Median 0.763 0.65088 NaN 1 0 Median 0.87534 0.87871 9.2552 2 0 Median 0.92554 0.79406 NaN 1 0 Median 0.90498 0.91211 9.7627 4 0 Median 1.0191 0.86391 4.092 2 0 Median 74826000 39055000 35771000 0 0 0 126540 79395 47141 27627000 14733000 12894000 174980 83320 91660 45854000 23674000 22180000 1043600 484980 558590 12801 1212 13316 64987;64988;64989;64990;64991;64992;64993;64994;64995;64996 65268;65269;65270;65271;65272;65273;65274;65275 65269 8 GYDDRDYYSR GSSRRRDYYDRGYDRGYDDRDYYSRSYRGG RGYDRGYDDRDYYSRSYRGGGGGGGGWRAA R G Y S R S 0 2 0 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 3 0 0 0 10 1 1308.5371 P62995;H7BXF3;H7C2L4 P62995 229 238 TRA2B Transformer-2 protein homolog beta yes no 2;3 9.601E-15 185.29 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 3 10 9 1.1201 1.0827 12.141 30 Median 1.1764 1.2377 0.29323 2 0 Median 1.2089 1.1127 NaN 1 0 Median 0.94693 0.98835 14.184 5 0 Median 1.1909 1.0483 4.2769 3 0 Median 1.03 1.1281 11.565 10 0 Median 1.1331 0.99324 11.217 9 0 Median 148510000 69914000 78601000 2086100 916650 1169400 713640 245610 468030 8200900 4139800 4061100 10723000 4706000 6017300 110780000 53190000 57594000 16007000 6716300 9290700 12802 2614 13317 64997;64998;64999;65000;65001;65002;65003;65004;65005;65006;65007;65008;65009;65010;65011;65012;65013;65014;65015;65016;65017;65018;65019;65020;65021;65022;65023;65024;65025;65026 65276;65277;65278;65279;65280;65281;65282;65283;65284;65285;65286;65287;65288;65289;65290;65291;65292;65293;65294;65295;65296;65297 65287 22 GYDELVPHQISVVSEER TTIVSMACCASGSTRGYDELVPHQISVVSE DELVPHQISVVSEERFYTKWNPEALPSNTG R G Y E R F 0 1 0 1 0 1 3 1 1 1 1 0 0 0 1 2 0 0 1 3 0 0 17 0 1955.9589 P35573 P35573 659 675 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 1.0204E-10 86.772 By MS/MS 1 1.2124 1.1677 NaN 1 Median 1.2124 1.1677 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4279200 1896400 2382800 4279200 1896400 2382800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12803 2243 13318 65027 65298 65298 1 GYDFESETDTETIAK IITNYKDLKKFLESKGYDFESETDTETIAK GYDFESETDTETIAKLVKYMYDNRESQDTS K G Y A K L 1 0 0 2 0 0 3 1 0 1 0 1 0 1 0 1 3 0 1 0 0 0 15 0 1704.7366 Q06210 Q06210 140 154 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 3.0893E-09 116.55 By MS/MS By matching 1 2 1.4077 1.2659 9.6091 3 Median 1.5161 1.3835 NaN 1 0 Median 1.362 1.2023 7.2973 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11413000 4501900 6911400 9336400 3641100 5695300 2076900 860870 1216000 0 0 0 0 0 0 0 0 0 0 0 0 12804 2723 13319 65028;65029;65030 65299;65300 65299 2 GYDRYEDYDYR GGRRRDSYYDRGYDRGYDRYEDYDYRYRRR GYDRGYDRYEDYDYRYRRRSPSPYYSRYRS R G Y Y R Y 0 2 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 11 1 1513.611 Q13595 Q13595 245 255 TRA2A Transformer-2 protein homolog alpha yes yes 2;3 6.7293E-05 108.98 By matching By MS/MS By MS/MS By matching 2 2 3 3 1.1211 1.0139 21.312 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3373 1.3832 41.91 2 0 Median 1.2641 1.1128 3.3479 2 0 Median 0.86754 0.92599 7.2562 3 0 Median 1.1216 0.98644 11.633 3 0 Median 24777000 11570000 13207000 0 0 0 0 0 0 7161700 3443200 3718500 5959500 2346600 3612900 8339000 4263000 4076000 3316400 1517000 1799400 12805 2828 13320 65031;65032;65033;65034;65035;65036;65037;65038;65039;65040 65301;65302;65303;65304;65305 65305 5 GYDSDPVK ENKPKKELIKVLIQRGYDSDPVKAWKEAQQ IKVLIQRGYDSDPVKAWKEAQQKVPDEEEN R G Y V K A 0 0 0 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 1 0 0 8 0 879.39741 P11388 P11388 1081 1088 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.025095 42.914 By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1.0016 0.97735 15.703 6 Median 1.0174 0.96006 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9159 0.96901 3.7356 2 0 Median 1.3139 1.1827 NaN 1 0 Median 1.2004 1.2678 NaN 1 0 Median 0.96283 0.82741 NaN 1 0 Median 5483100 2488900 2994200 232070 111030 121030 0 0 0 1632900 851980 780930 348730 141270 207460 2527100 1038300 1488900 742230 346340 395890 12806 1963 13321 65041;65042;65043;65044;65045;65046 65306;65307 65307 2 GYDVDFPR VIPLQLLAFHLAVLRGYDVDFPRNLAKSVT FHLAVLRGYDVDFPRNLAKSVTVE______ R G Y P R N 0 1 0 2 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 8 0 967.43995 Q06210;O94808 Q06210 683 690 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 2 0.011256 57.281 By matching By MS/MS 1 1 1.0503 0.9542 12.548 2 Median 1.096 1.0427 NaN 1 0 Median 1.0065 0.87318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10076000 4898500 5177900 6342600 3084200 3258400 3733800 1814300 1919500 0 0 0 0 0 0 0 0 0 0 0 0 12807 2723 13322 65047;65048 65308 65308 1 GYDVIAQAQSGTGK KPSAIQQRAILPCIKGYDVIAQAQSGTGKT KGYDVIAQAQSGTGKTATFAISILQQIELD K G Y G K T 2 0 0 1 0 2 0 3 0 1 0 1 0 0 0 1 1 0 1 1 0 0 14 0 1393.6838 P60842;J3KT12;J3QS69;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25;J3KT04;J3KS93;E7EMV8;Q14240;E7EQG2;J3KSN7 P60842 69 82 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 4.5077E-33 215.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 9 3 1 5 7 1.1974 1.0689 40.274 26 Median 1.1912 1.0986 3.0197 3 0 Median 1.0766 0.92134 18.695 8 2 Median 1.2177 1.1544 15.935 3 0 Median 1.2036 1.091 NaN 1 0 Median 2.258 2.3866 62.994 5 4 Median 1.2173 0.99435 31.6 6 0 Median 1129900000 522390000 607530000 479960000 219630000 260330000 182250000 85652000 96600000 203840000 95996000 107840000 186190000 86294000 99897000 35957000 14780000 21177000 41710000 20036000 21674000 12808 2529;2867 13323 65049;65050;65051;65052;65053;65054;65055;65056;65057;65058;65059;65060;65061;65062;65063;65064;65065;65066;65067;65068;65069;65070;65071;65072;65073;65074;65075;65076;65077 65309;65310;65311;65312;65313;65314;65315;65316;65317;65318;65319;65320;65321;65322;65323;65324;65325;65326;65327;65328;65329;65330;65331;65332;65333;65334;65335;65336;65337;65338;65339;65340;65341;65342;65343;65344;65345;65346;65347;65348;65349 65318 41 GYDYGPHFQGILEASLEGDSGR LFLAQAEVYKELRLRGYDYGPHFQGILEAS FQGILEASLEGDSGRLLWKDNWVSFMDTML R G Y G R L 1 1 0 2 0 1 2 5 1 1 2 0 0 1 1 2 0 0 2 0 0 0 22 0 2367.0768 P49327;A0A0U1RQF0 P49327 998 1019 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 1.5752E-14 87.772 By MS/MS By MS/MS 2 2 1.0297 0.92956 20.267 4 Median 0.83666 0.81213 1.3988 2 1 Median 1.3097 1.1349 10.522 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17138000 8983400 8154700 13449000 7266600 6182700 3688900 1716800 1972100 0 0 0 0 0 0 0 0 0 0 0 0 12809 2377 13324 65078;65079;65080;65081 65350;65351;65352;65353;65354;65355 65351 6 GYEEEIIHFKK DNIKRNHNLALGRQKGYEEEIIHFKKELRE GRQKGYEEEIIHFKKELREPQFRDAEEKYR K G Y K K E 0 0 0 0 0 0 3 1 1 2 0 2 0 1 0 0 0 0 1 0 0 0 11 1 1391.7085 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1080 1090 RAD50 DNA repair protein RAD50 yes no 3 0.0020874 39.917 By MS/MS By MS/MS By matching 1 1 1 1.2121 1.1376 50.902 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84046 0.97453 NaN 1 0 Median 1.2121 1.1376 NaN 1 0 Median 2.2342 2.5168 NaN 1 0 Median NaN NaN NaN 0 0 Median 20519000 9445500 11074000 0 0 0 0 0 0 14266000 6933200 7332600 2470500 1178400 1292100 3783000 1333900 2449100 0 0 0 12810 3561 13325 65082;65083;65084 65356;65357;65358 65356 3 GYEENYFFIFR IAREYNWNVKNKASKGYEENYFFIFREGDG KASKGYEENYFFIFREGDGVYYNELETRVR K G Y F R E 0 1 1 0 0 0 2 1 0 1 0 0 0 3 0 0 0 0 2 0 0 0 11 0 1483.6772 Q8N7H5;B4DGJ5 Q8N7H5 306 316 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.039324 28.169 By MS/MS By matching 1 1 1.0618 1.1064 7.6123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1238 1.1675 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0033 1.0484 NaN 1 0 Median NaN NaN NaN 0 0 Median 1238300 604340 633970 0 0 0 0 0 0 955080 488710 466360 0 0 0 283230 115620 167600 0 0 0 12811 3393 13326 65085;65086 65359 65359 1 GYEEVHVPALKPK KRCQLPDGSFRRQRKGYEEVHVPALKPKPF RKGYEEVHVPALKPKPFGSEEQLLPVEKLP K G Y P K P 1 0 0 0 0 0 2 1 1 0 1 2 0 0 2 0 0 0 1 2 0 0 13 1 1465.7929 O75643;A0A494C1A5 O75643 441 453 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.0014242 40.577 By MS/MS 1 1.0107 0.94975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0107 0.94975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3072700 1558600 1514100 0 0 0 0 0 0 0 0 0 3072700 1558600 1514100 0 0 0 0 0 0 12812 1688 13327 65087 65360;65361 65360 2 GYEEVHVPALKPKPFGSEEQLLPVEK KRCQLPDGSFRRQRKGYEEVHVPALKPKPF PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K G Y E K L 1 0 0 0 0 1 5 2 1 0 3 3 0 1 4 1 0 0 1 3 0 0 26 2 2919.5382 O75643;A0A494C1A5 O75643 441 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3;4 0.012647 32.72 By MS/MS 2 0.37938 0.43955 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37938 0.43955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17783000 15041000 2742600 0 0 0 0 0 0 17783000 15041000 2742600 0 0 0 0 0 0 0 0 0 12813 1688 13328 65088;65089 65362;65363 65362 2 GYEEWLLNEIR SDINNGWQHLEQAEKGYEEWLLNEIRRLER QAEKGYEEWLLNEIRRLERLDHLAEKFRQK K G Y I R R 0 1 1 0 0 0 3 1 0 1 2 0 0 0 0 0 0 1 1 0 0 0 11 0 1420.6987 O43707;P12814;H9KV75;P35609;A0A494C1A0;F6THM6;A0A494C060 O43707 396 406 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2 2.6661E-30 211.02 By MS/MS By MS/MS By MS/MS 2 3 1 1.0019 0.96591 10.552 6 Median 1.084 1.061 10.946 2 0 Median 1.0088 0.90368 4.9641 3 0 Median 0.99507 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36711000 17317000 19394000 9279400 4016200 5263200 26311000 12744000 13567000 1120600 557220 563400 0 0 0 0 0 0 0 0 0 12814 1585;1983 13329 65090;65091;65092;65093;65094;65095 65364;65365;65366;65367;65368 65368 5 GYEEWLLNEIRR SDINNGWQHLEQAEKGYEEWLLNEIRRLER AEKGYEEWLLNEIRRLERLDHLAEKFRQKA K G Y R R L 0 2 1 0 0 0 3 1 0 1 2 0 0 0 0 0 0 1 1 0 0 0 12 1 1576.7998 O43707;P12814;H9KV75;P35609;A0A494C1A0;F6THM6;A0A494C060 O43707 396 407 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2 0.0021885 51.727 By MS/MS By matching 1 2 0.96864 1.0762 32.451 3 Median 0.96864 1.0762 NaN 1 0 Median 0.9803 0.95741 44.888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5398900 2719000 2679900 2182500 1261100 921440 3216400 1457900 1758400 0 0 0 0 0 0 0 0 0 0 0 0 12815 1585;1983 13330 65096;65097;65098 65369 65369 1 GYELLFQPEVVR ANDTVDFPKRTSPARGYELLFQPEVVRIYI PARGYELLFQPEVVRIYISLLKESKTPAIL R G Y V R I 0 1 0 0 0 1 2 1 0 0 2 0 0 1 1 0 0 0 1 2 0 0 12 0 1448.7664 C9JZR2;O60716 C9JZR2 655 666 CTNND1 Catenin delta-1 yes no 2 3.3145E-05 96.331 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 1 3 3 1 0.8749 0.81571 27.117 13 Median 0.72824 0.74674 26.534 5 0 Median 0.93577 0.81092 NaN 1 1 Median 0.7769 0.82634 40.031 3 0 Plateau 0.99181 0.8835 8.0454 3 0 Median 0.98726 1.0503 NaN 1 0 Median NaN NaN NaN 0 0 Median 29107000 15511000 13597000 10882000 5653800 5228400 3010000 1466900 1543100 12473000 7050500 5422400 836650 475900 360750 1905400 863450 1041900 0 0 0 12816 732 13331 65099;65100;65101;65102;65103;65104;65105;65106;65107;65108;65109;65110;65111 65370;65371;65372;65373;65374;65375;65376;65377;65378;65379;65380;65381;65382 65373 13 GYESFGVHR KNIGENEGGIDKFSRGYESFGVHRCADGGL IDKFSRGYESFGVHRCADGGLYCKEWAPGA R G Y H R C 0 1 0 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 1 1 0 0 9 0 1050.4883 Q04446;E9PGM4 Q04446 72 80 GBE1 1,4-alpha-glucan-branching enzyme yes no 2 0.0001768 143 By MS/MS By MS/MS 2 1 1.3215 1.2215 1.9868 2 Median 1.2214 1.2045 NaN 1 0 Median 1.4298 1.2388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6707000 2773200 3933800 2203800 951830 1252000 4503200 1821300 2681800 0 0 0 0 0 0 0 0 0 0 0 0 12817 2711 13332 65112;65113;65114 65383;65384;65385;65386 65386 4 GYEVHGIVR TGQDGSYLAEFLLEKGYEVHGIVRRSSSFN EFLLEKGYEVHGIVRRSSSFNTGRIEHLYK K G Y V R R 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 1 2 0 0 9 0 1028.5403 O60547 O60547 47 55 GMDS GDP-mannose 4,6 dehydratase yes yes 2 0.032947 47.849 By MS/MS 1 1.0641 1.0683 NaN 1 Median 1.0641 1.0683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2397400 990550 1406900 2397400 990550 1406900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12818 1620 13333 65115 65387 65387 1 GYEYVLEPSPVSLPLDRPQETR DSQLGFHRSRKDKTRGYEYVLEPSPVSLPL PSPVSLPLDRPQETRVLQVSCGRAHSLVLT R G Y T R V 0 2 0 1 0 1 3 1 0 0 3 0 0 0 4 2 1 0 2 2 0 0 22 1 2544.286 A0A087WT38;Q96I51 A0A087WT38 81 102 WBSCR16 Williams-Beuren syndrome chromosomal region 16 protein yes no 3 1.3233E-09 58.49 By MS/MS 1 0.50594 0.54779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50594 0.54779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5288200 3090000 2198200 0 0 0 0 0 0 5288200 3090000 2198200 0 0 0 0 0 0 0 0 0 12819 14 13334 65116 65388;65389 65388 2 GYFDEEMNR PVHSHRVPVDVAYRRGYFDEEMNRVLADPS DVAYRRGYFDEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 9 0 1159.4604 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2970 2978 EPPK1;PLEC Epiplakin;Plectin no no 2 9.5783E-07 158.36 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 5 5 1 1 4 5 1.2887 1.2414 15.502 21 Median 1.2803 1.2414 12.385 5 0 Median 1.3592 1.0989 24.723 5 1 Median 1.0347 1.1363 NaN 1 0 Median 1.3034 1.1313 NaN 1 0 Median 1.1962 1.2452 1.595 4 0 Median 1.601 1.2974 18.896 5 0 Median 263020000 113490000 149530000 137650000 59339000 78310000 95954000 41663000 54291000 2974200 1418300 1556000 396080 173140 222940 21813000 9264400 12548000 4233700 1634700 2599000 12820 2933;2520 13335;13336 65117;65118;65119;65120;65121;65122;65123;65124;65125;65126;65127;65128;65129;65130;65131;65132;65133;65134;65135;65136;65137 65390;65391;65392;65393;65394;65395;65396;65397;65398;65399;65400;65401;65402;65403;65404;65405 65401 1198 16 GYFDEEMNRVLADPSDDTK PVHSHRVPVDVAYRRGYFDEEMNRVLADPS EEMNRVLADPSDDTKGFFDPNTHENLTYLQ R G Y T K G 1 1 1 4 0 0 2 1 0 0 1 1 1 1 1 1 1 0 1 1 0 0 19 1 2200.9583 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2970 2988 EPPK1;PLEC Epiplakin;Plectin no no 3 0.00096998 27.7 By MS/MS 1 1.1149 1.1433 NaN 1 Median 1.1149 1.1433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044600 1424200 1620300 3044600 1424200 1620300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12821 2933;2520 13337 65138 65406 65406 1 GYFDQELK PVTQVNEVTGTLRIKGYFDQELKAWLLEKG TGTLRIKGYFDQELKAWLLEKGF_______ K G Y L K A 0 0 0 1 0 1 1 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 998.47091 Q13405;H0YDP7 Q13405 151 158 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.06 32.61 By matching By MS/MS By matching 1 1 1 0.97708 0.95607 21.686 3 Median 0.87705 0.82984 NaN 1 0 Median 1.4549 1.2704 NaN 1 0 Median 0.97708 0.95607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6718900 3298400 3420400 2784400 1433500 1350900 673260 250970 422280 3261200 1613900 1647200 0 0 0 0 0 0 0 0 0 12822 2810 13338 65139;65140;65141 65407 65407 1 GYFEHREDR QFQSRKRPYEENRGRGYFEHREDRRGRSPQ EENRGRGYFEHREDRRGRSPQPPAEEDEDD R G Y D R R 0 2 0 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 9 1 1207.537 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0;M0QZV6;M0R0K8;M0QYI8 Q9BUJ2 182 190 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.008605 37.191 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1.0593 1.0908 17.237 8 Median 0.98681 1.0532 2.2748 2 0 Median 1.1038 1.0781 7.751 2 0 Median 1.2152 1.3798 18.124 2 0 Median NaN NaN NaN 0 0 Median 0.78908 0.85735 NaN 1 0 Median 1.2297 1.1116 NaN 1 0 Median 5633800 2740500 2893300 1088400 501530 586920 1565800 642990 922800 522460 226510 295950 0 0 0 2291100 1291400 999720 165990 78115 87871 12823 3840 13339 65142;65143;65144;65145;65146;65147;65148;65149 65408;65409;65410;65411;65412 65409 5 GYFEYIEENK DKKRGVKRPREDHGRGYFEYIEENKYSRAK EDHGRGYFEYIEENKYSRAKSPQPPVEEED R G Y N K Y 0 0 1 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 10 0 1290.5768 Q00839;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PRI6 Q00839 256 265 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.00035909 100.02 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 3 3 3 1 1.1646 1.0487 33.448 15 Median 1.0007 0.98201 5.3963 2 0 Median 1.2601 1.0647 7.8377 3 0 Median 1.017 1.0901 78.572 3 0 Median 1.2094 1.0639 12.849 3 0 Median 1.0221 1.0351 9.8554 3 2 Median 1.1646 0.95864 NaN 1 0 Median 199400000 93861000 105540000 11648000 5600500 6047100 24074000 10951000 13123000 59012000 28326000 30686000 18807000 8059300 10748000 82770000 39481000 43289000 3091800 1443700 1648100 12824 2680 13340 65150;65151;65152;65153;65154;65155;65156;65157;65158;65159;65160;65161;65162;65163;65164 65413;65414;65415;65416;65417;65418;65419;65420;65421;65422 65415 10 GYFEYIEENKYSR DKKRGVKRPREDHGRGYFEYIEENKYSRAK GRGYFEYIEENKYSRAKSPQPPVEEEDEHF R G Y S R A 0 1 1 0 0 0 3 1 0 1 0 1 0 1 0 1 0 0 3 0 0 0 13 1 1696.7733 Q00839;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PRI6 Q00839 256 268 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 3.6263E-30 209.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 8 4 8 2 1.0665 1.1435 13.571 34 Median 1.0477 1.0637 10.823 7 0 Median 1.2322 1.1506 9.4128 5 0 Median 1.0642 1.197 11.485 8 1 Median 1.3918 1.3375 11.922 4 0 Median 1.0291 1.0965 8.2064 8 0 Median 1.0108 0.88996 19.559 2 0 Median 1063400000 495830000 567590000 127910000 61587000 66318000 9781000 4244100 5536900 391930000 183890000 208040000 9585800 4206700 5379000 506900000 233870000 273030000 17321000 8030800 9289800 12825 2680 13341 65165;65166;65167;65168;65169;65170;65171;65172;65173;65174;65175;65176;65177;65178;65179;65180;65181;65182;65183;65184;65185;65186;65187;65188;65189;65190;65191;65192;65193;65194;65195;65196;65197;65198 65423;65424;65425;65426;65427;65428;65429;65430;65431;65432;65433;65434;65435;65436;65437;65438;65439;65440;65441;65442;65443;65444;65445;65446;65447;65448;65449;65450;65451;65452;65453;65454;65455;65456;65457;65458;65459;65460;65461;65462;65463;65464 65454 42 GYFFPTSAR ANILGYAVSTFAMVKGYFFPTSARDCKFTG TFAMVKGYFFPTSARDCKFTGNFFYNYMMG K G Y A R D 1 1 0 0 0 0 0 1 0 0 0 0 0 2 1 1 1 0 1 0 0 0 9 0 1044.5029 Q9UBM7;E9PM00 Q9UBM7 199 207 DHCR7 7-dehydrocholesterol reductase yes no 2 0.0096066 65.252 By MS/MS 1 1.0707 0.8918 NaN 1 Median NaN NaN NaN 0 0 Median 1.0707 0.8918 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6452200 3433100 3019000 0 0 0 6452200 3433100 3019000 0 0 0 0 0 0 0 0 0 0 0 0 12826 4241 13342 65199 65465 65465 1 GYFSEEMNR PVHSHRVPVDVAYQRGYFSEEMNRVLADPS DVAYQRGYFSEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 9 0 1131.4655 Q15149;H0YDN1 Q15149 3629 3637 PLEC Plectin yes no 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 3 1.3601 1.2092 18.075 12 Median 1.2113 1.1901 5.0962 2 0 Median 1.3884 1.2035 9.0626 3 0 Median 1.1934 1.2599 NaN 1 0 Median 1.1084 0.96779 32.155 2 0 Median 1.4608 1.5226 NaN 1 0 Median 1.3603 1.14 19.348 3 0 Median 58683000 25944000 32739000 20906000 9512100 11394000 16939000 7364200 9574900 10275000 4930400 5344800 3042800 1336000 1706800 5748900 2113700 3635200 1771100 687840 1083200 12827 2933 13343 65200;65201;65202;65203;65204;65205;65206;65207;65208;65209;65210;65211 65466;65467;65468;65469;65470;65471 65467 6 GYGFAEYMK ERCFLVYSERTGQSKGYGFAEYMKKDSAAR RTGQSKGYGFAEYMKKDSAARAKSDLLGKP K G Y M K K 1 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 2 0 0 0 9 0 1064.4637 A0A087WZ13;E9PAU2;Q8IY67 A0A087WZ13 174 182 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 2 0.006443 54.549 By matching By matching By MS/MS By matching By matching 1 2 2 1 2 1.0847 0.95605 22.263 8 Median 1.2996 1.267 NaN 1 0 Median 1.0538 0.92496 7.2915 2 0 Median 0.90667 0.93358 30.484 2 0 Median 1.5659 1.375 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0176 0.85193 13.689 2 0 Median 8517800 4440300 4077600 1602500 642590 959960 334980 160310 174670 6009500 3335400 2674100 122390 51443 70947 0 0 0 448440 250550 197890 12828 90 13344 65212;65213;65214;65215;65216;65217;65218;65219 65472;65473 65472 2 GYGFGLIK TYADLGKSARDVFTKGYGFGLIKLDLKTKS ARDVFTKGYGFGLIKLDLKTKSENGLEFTS K G Y I K L 0 0 0 0 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 853.46979 P21796;C9JI87 P21796 21 28 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 1;2 0.0062714 71.949 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 4 5 2 2 3 5 1.3769 1.1594 18.469 21 Median 1.1682 1.0716 4.714 4 0 Median 1.476 1.2432 14.712 5 0 Median 1.3078 1.2644 17.123 2 0 Median 1.3599 1.1447 1.8049 2 0 Median 1.617 1.6211 6.6487 3 0 Median 1.3428 1.1304 18.601 5 0 Median 317340000 145840000 171500000 214640000 101980000 112660000 36903000 14998000 21905000 9217700 3951600 5266000 7857300 3266800 4590500 9485600 3714600 5771000 39240000 17928000 21312000 12829 2092 13345 65220;65221;65222;65223;65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236;65237;65238;65239;65240 65474;65475;65476;65477;65478;65479;65480;65481 65481 7 GYGFGMVK TYCDLGKAAKDVFNKGYGFGMVKIDLKTKS AKDVFNKGYGFGMVKIDLKTKSCSGVEFST K G Y V K I 0 0 0 0 0 0 0 3 0 0 0 1 1 1 0 0 0 0 1 1 0 0 8 0 857.41056 Q9Y277;E5RJN6;E5RHZ6;E5RFP6;E5RHE1;E5RFL1 Q9Y277 21 28 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 0.007444 67.035 By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 1 2 1.5704 1.3362 16.86 9 Median 1.1127 1.0495 9.3652 2 0 Median 1.565 1.3161 2.2891 2 0 Median 1.8582 1.7895 NaN 1 0 Median 1.6754 1.4187 NaN 1 0 Median 1.2999 1.3362 NaN 1 0 Median 1.6797 1.3795 10.546 2 0 Median 97489000 44706000 52783000 75440000 36245000 39195000 5644600 2125600 3519000 1873300 624950 1248300 1585900 706230 879700 3783100 1628200 2154900 9162400 3375900 5786600 12830 4377 13346 65241;65242;65243;65244;65245;65246;65247;65248;65249 65482;65483 65483 2 GYGFIEYEK KSCTLARDPTTGKHKGYGFIEYEKAQSSQD TTGKHKGYGFIEYEKAQSSQDAVSSMNLFD K G Y E K A 0 0 0 0 0 0 2 2 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1104.5128 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;H0YCP8 A0A0J9YVP6 243 251 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 2 3 1.05 0.95876 18.723 13 Median 1.0791 1.0231 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0414 1.0137 0.61689 2 0 Median 1.1296 0.988 11.541 5 0 Median 0.70866 0.68713 37.417 2 0 Median 1.0067 0.83931 7.0114 3 0 Median 139370000 68266000 71108000 7978300 3747000 4231400 0 0 0 89962000 43640000 46322000 22443000 11223000 11220000 9058600 4943900 4114700 9932500 4712500 5220000 12831 284 13347 65250;65251;65252;65253;65254;65255;65256;65257;65258;65259;65260;65261;65262;65263 65484;65485;65486;65487;65488;65489;65490;65491;65492;65493;65494;65495;65496;65497 65494 14 GYGFVHFETQEAAER NILSCKVVCDENGSKGYGFVHFETQEAAER GYGFVHFETQEAAERAIEKMNGMLLNDRKV K G Y E R A 2 1 0 0 0 1 3 2 1 0 0 0 0 2 0 0 1 0 1 1 0 0 15 0 1739.7903 P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YBN4;E5RGH3 P11940 139 153 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2;3 1.6761E-09 113.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 4 2 2 1.1174 0.99146 16.752 16 Median 1.0854 1.0248 6.6472 4 0 Median 1.0462 0.90382 5.3705 3 0 Median 1.2483 1.2652 NaN 1 0 Median 1.1088 0.93874 8.2765 4 0 Median 1.4264 1.4419 13.697 2 0 Median 1.2669 1.0296 11.169 2 0 Median 213040000 99180000 113860000 109130000 52763000 56370000 36912000 16692000 20220000 18169000 9064800 9104500 7540100 3552000 3988100 37064000 15288000 21776000 4217800 1820200 2397600 12832 1973 13348 65264;65265;65266;65267;65268;65269;65270;65271;65272;65273;65274;65275;65276;65277;65278;65279 65498;65499;65500;65501;65502;65503;65504;65505;65506;65507;65508;65509;65510;65511;65512;65513;65514;65515;65516 65503 18 GYGFVSFFNK SDARVVKDMATGKSKGYGFVSFFNKWDAEN TGKSKGYGFVSFFNKWDAENAIQQMGGQWL K G Y N K W 0 0 1 0 0 0 0 2 0 0 0 1 0 3 0 1 0 0 1 1 0 0 10 0 1164.5604 C9JTN7;H7BY49;F8W8I6;P31483 C9JTN7 137 146 TIA1 Nucleolysin TIA-1 isoform p40 no no 2 0.0040406 54.611 By matching By matching By MS/MS By matching By matching By matching 1 1 3 1 2 2 0.91419 0.81353 17.301 10 Median 0.69313 0.67944 NaN 1 0 Median 1.3782 1.1937 NaN 1 0 Median 0.91858 0.95785 13.074 3 0 Median 0.87893 0.78398 NaN 1 0 Median 0.94909 0.92588 16.616 2 0 Median 0.94453 0.79156 2.1945 2 0 Median 16381000 8629400 7751700 484790 278520 206260 258820 111490 147330 12498000 6639200 5858300 958880 554550 404330 1797500 833890 963660 383540 211730 171810 12833 724;1086 13349 65280;65281;65282;65283;65284;65285;65286;65287;65288;65289 65517;65518;65519 65518 3 GYGFVSFK LKAKVIRDKRTGKTKGYGFVSFKDPSDYVR KRTGKTKGYGFVSFKDPSDYVRAMREMNGK K G Y F K D 0 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 0 0 1 1 0 0 8 0 903.44905 K7EQ03;K7EP90;Q9BTD8;K7EML2 K7EQ03 369 376 RBM42 RNA-binding protein 42 yes no 2 0.026777 41.652 By MS/MS By matching 1 1 1.0742 1.0167 5.3781 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96211 0.97878 NaN 1 0 Median 1.1993 1.0561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936000 1847100 2088900 0 0 0 0 0 0 3659300 1732400 1926900 276660 114640 162020 0 0 0 0 0 0 12834 1391 13350 65290;65291 65520 65520 1 GYGFVSFKDPSDYVR LKAKVIRDKRTGKTKGYGFVSFKDPSDYVR GYGFVSFKDPSDYVRAMREMNGKYVGSRPI K G Y V R A 0 1 0 2 0 0 0 2 0 0 0 1 0 2 1 2 0 0 2 2 0 0 15 1 1735.8206 K7EQ03;K7EP90;Q9BTD8;K7EML2 K7EQ03 369 383 RBM42 RNA-binding protein 42 yes no 3 0.00022444 46.964 By matching By MS/MS By matching 1 1 1 0.96469 1.0186 27.892 3 Median 0.63924 0.6491 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96469 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98335 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median 10932000 5579200 5353200 1159400 656030 503420 0 0 0 8839700 4475600 4364000 0 0 0 933280 447550 485720 0 0 0 12835 1391 13351 65292;65293;65294 65521;65522 65522 2 GYGFVSFYNK SDARVVKDMATGKSKGYGFVSFYNKLDAEN TGKSKGYGFVSFYNKLDAENAIVHMGGQWL K G Y N K L 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 1 0 0 2 1 0 0 10 0 1180.5553 Q01085;E7ETJ9 Q01085 139 148 TIAL1 Nucleolysin TIAR yes no 2 0.00076705 71.501 By matching By matching By MS/MS By matching By matching By matching 1 1 3 1 1 3 1.249 1.1235 20.542 10 Median 1.2511 1.1726 NaN 1 0 Median 1.3599 1.1716 NaN 1 0 Median 1.4203 1.3842 10.09 3 0 Median 1.2842 1.0774 NaN 1 0 Median 0.7821 0.75503 NaN 1 0 Median 1.2196 1.0464 4.5516 3 0 Plateau 40518000 18867000 21651000 3271500 1466300 1805200 860410 418670 441740 34466000 16015000 18450000 717410 297740 419670 749890 469280 280600 453130 200180 252950 12836 2682 13352 65295;65296;65297;65298;65299;65300;65301;65302;65303;65304 65523;65524;65525;65526 65526 4 GYGFVTMADR EEAVVITDRQTGKSRGYGFVTMADRAAAER TGKSRGYGFVTMADRAAAERACKDPNPIID R G Y D R A 1 1 0 1 0 0 0 2 0 0 0 0 1 1 0 0 1 0 1 1 0 0 10 0 1115.507 Q9BX46;F6VZ39;Q9H0Z9;H0YA61 Q9BX46 53 62 RBM24;RBM38 RNA-binding protein 24;RNA-binding protein 38 yes no 2 0.00033827 85.676 By MS/MS By MS/MS By matching 2 2 1 1.2182 1.1321 6.5451 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1647 1.1502 2.4694 2 0 Median 1.433 1.1572 3.0996 2 0 Median 1.0258 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median 15115000 6783600 8331200 0 0 0 0 0 0 12420000 5673600 6746000 1247600 497470 750180 1447500 612480 835050 0 0 0 12837 3876 13353 65305;65306;65307;65308;65309 65527;65528;65529;65530;65531;65532 65527 6 GYGLFAGPCK RNVDSNNKELSIAIRGYGLFAGPCKVINAK SIAIRGYGLFAGPCKVINAKDVDFMYVELI R G Y C K V 1 0 0 0 1 0 0 3 0 0 1 1 0 1 1 0 0 0 1 0 0 0 10 0 1068.5063 P78527 P78527 365 374 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0011679 86.953 By MS/MS By MS/MS By MS/MS 1 1 2 0.97374 0.93303 22.478 4 Median NaN NaN NaN 0 0 Median 1.2475 1.0983 NaN 1 1 Median 0.60529 0.64597 NaN 1 1 Median 0.97374 0.93303 1.5789 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32532000 17112000 15420000 0 0 0 8868100 3423300 5444800 20241000 11995000 8246300 3423300 1694300 1729000 0 0 0 0 0 0 12838 2647 13354 65310;65311;65312;65313 65533;65534;65535;65536 65533 4 GYGYGQGAGTLNMDR EIYCKSCYGKKYGPKGYGYGQGAGTLNMDR GYGYGQGAGTLNMDRGERLGIKPESVQPHR K G Y D R G 1 1 1 1 0 1 0 5 0 0 1 0 1 0 0 0 1 0 2 0 0 0 15 0 1558.6834 Q16527;F8VQR7;F8VW96 Q16527 70 84 CSRP2 Cysteine and glycine-rich protein 2 yes no 2 2.8691E-12 169.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 1 1.0855 0.99753 13.614 12 Median 1.0801 1.0401 0.19216 2 0 Median 0.96672 0.82978 17.48 4 0 Median 1.0599 1.0366 5.2662 3 1 Median 1.1454 0.9508 3.1521 2 0 Median 1.0919 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median 115700000 52121000 63578000 25981000 10322000 15659000 8424300 3852200 4572100 67561000 31980000 35581000 12271000 5325900 6944800 1462100 641140 820990 0 0 0 12839 2984 13355;13356 65314;65315;65316;65317;65318;65319;65320;65321;65322;65323;65324;65325 65537;65538;65539;65540;65541;65542;65543;65544;65545;65546;65547;65548;65549;65550;65551;65552;65553;65554;65555 65542 1635 19 GYGYGQGAGTLNMDRGER EIYCKSCYGKKYGPKGYGYGQGAGTLNMDR YGQGAGTLNMDRGERLGIKPESVQPHRPTT K G Y E R L 1 2 1 1 0 1 1 6 0 0 1 0 1 0 0 0 1 0 2 0 0 0 18 1 1900.8486 Q16527;F8VQR7;F8VW96 Q16527 70 87 CSRP2 Cysteine and glycine-rich protein 2 yes no 3 1.3649E-06 77.562 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1.0585 0.94944 13.988 6 Median 1.0546 1.1273 NaN 1 0 Median 1.0625 0.90586 NaN 1 0 Median 1.0011 1.0623 16.777 2 0 Median 0.99055 0.88695 10.516 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33487000 15361000 18127000 9141000 3960200 5180800 1322400 587850 734550 8356400 3955200 4401200 14667000 6857400 7810000 0 0 0 0 0 0 12840 2984 13357;13358 65326;65327;65328;65329;65330;65331 65556;65557;65558;65559;65560 65559 1635 5 GYGYGQGAGTLSTDK EIYCKSCYGKKYGPKGYGYGQGAGTLSTDK GYGYGQGAGTLSTDKGESLGIKHEEAPGHR K G Y D K G 1 0 0 1 0 1 0 5 0 0 1 1 0 0 0 1 2 0 2 0 0 0 15 0 1473.6736 E9PP21;P21291;E9PND2;E9PS42 E9PP21 37 51 CSRP1 Cysteine and glycine-rich protein 1 yes no 2 0.000353 58.132 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.6639 1.4656 26.89 4 Median 2.1326 1.9801 NaN 1 1 Median 1.214 1.0656 NaN 1 0 Median 1.7456 1.6386 NaN 1 0 Median 1.586 1.3108 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16127000 5524600 10602000 5296900 1586800 3710200 664710 357000 307720 8894300 3145600 5748700 1270600 435240 835370 0 0 0 0 0 0 12841 977 13359 65332;65333;65334;65335 65561;65562;65563;65564 65562 4 GYGYGQGAGTLSTDKGESLGIK EIYCKSCYGKKYGPKGYGYGQGAGTLSTDK AGTLSTDKGESLGIKHEEAPGHRPTTNPNA K G Y I K H 1 0 0 1 0 1 1 7 0 1 2 2 0 0 0 2 2 0 2 0 0 0 22 1 2158.0542 E9PP21;P21291;E9PND2;E9PS42 E9PP21 37 58 CSRP1 Cysteine and glycine-rich protein 1 yes no 2;3 3.1446E-26 128.32 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 1.0021 0.98103 13.835 12 Median 1.061 1.1564 9.4378 3 0 Median 0.97032 0.85908 8.374 5 0 Median 1.0699 1.0645 0.78194 2 0 Median 0.89763 0.80824 8.2106 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 231890000 107150000 124730000 144800000 65719000 79079000 26402000 13202000 13200000 48239000 21915000 26324000 12446000 6315700 6130700 0 0 0 0 0 0 12842 977 13360 65336;65337;65338;65339;65340;65341;65342;65343;65344;65345;65346;65347 65565;65566;65567;65568;65569;65570;65571;65572;65573;65574;65575;65576;65577 65577 13 GYIDLSK GRNECVVVIRVDKEKGYIDLSKRRVSPEEA VIRVDKEKGYIDLSKRRVSPEEAIKCEDKF K G Y S K R 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 7 0 794.41742 P05198;G3V4T5;H0YJS4 P05198 81 87 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.014376 86.512 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15404000 0 15404000 4847700 0 4847700 1644300 0 1644300 3048100 0 3048100 5863600 0 5863600 0 0 0 0 0 0 12843 1862 13361 65348;65349;65350;65351 65578;65579;65580;65581 65579 4 GYIFLEYASPAHAVDAVK KITNDFYPEEDGKTKGYIFLEYASPAHAVD FLEYASPAHAVDAVKNADGYKLDKQHTFRV K G Y V K N 4 0 0 1 0 0 1 1 1 1 1 1 0 1 1 1 0 0 2 2 0 0 18 0 1949.9887 P55884;C9JZG1 P55884 231 248 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 9.581E-06 55.452 By MS/MS 1 0.91901 0.89538 NaN 1 Median 0.91901 0.89538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5561200 2788700 2772500 5561200 2788700 2772500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12844 2504 13362 65352 65582 65582 1 GYIGVVNR DARDVLENKLLPLRRGYIGVVNRSQKDIEG KLLPLRRGYIGVVNRSQKDIEGKKDIRAAL R G Y N R S 0 1 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 876.48175 P50570;A0A1B0GUX5 P50570 230 237 DNM2 Dynamin-2 no no 2 0.0026052 106.76 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.0503 0.97488 20.342 4 Median NaN NaN NaN 0 0 Median 0.91596 0.79474 NaN 1 1 Median 0.90997 0.96952 NaN 1 0 Median 1.53 1.3031 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2043 0.98027 NaN 1 0 Median 12575000 5811600 6763400 0 0 0 2478600 1109000 1369700 6266900 3084700 3182200 1905300 706990 1198300 0 0 0 1924300 911040 1013300 12845 2417 13363 65353;65354;65355;65356;65357 65583;65584;65585;65586 65585 4 GYIPIYTPFFMR EQALIQYALRTLGSRGYIPIYTPFFMRKEV GSRGYIPIYTPFFMRKEVMQEVAQLSQFDE R G Y M R K 0 1 0 0 0 0 0 1 0 2 0 0 1 2 2 0 1 0 2 0 0 0 12 0 1503.7584 Q5T5C7;P49591 Q5T5C7 219 230 SARS Serine--tRNA ligase, cytoplasmic yes no 2 0.002732 47.938 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.95049 0.82745 15.896 5 Median 0.86279 0.82745 NaN 1 0 Median 0.75991 0.67303 NaN 1 0 Median 0.95049 0.99919 NaN 1 0 Median 0.9512 0.82724 NaN 1 0 Median 0.96501 0.9756 NaN 1 0 Median NaN NaN NaN 0 0 Median 10573000 5572600 5000300 7683500 4046900 3636700 427050 262330 164720 2219900 1142500 1077400 141600 71109 70493 100790 49808 50985 0 0 0 12846 2387 13364 65358;65359;65360;65361;65362 65587;65588 65588 2 GYISPYFINTSK LNDELEIIEGMKFDRGYISPYFINTSKGQK FDRGYISPYFINTSKGQKCEFQDAYVLLSE R G Y S K G 0 0 1 0 0 0 0 1 0 2 0 1 0 1 1 2 1 0 2 0 0 0 12 0 1388.6976 P10809;E7ESH4 P10809 222 233 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 5.0212E-06 147.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 3 1.1672 0.98268 24.589 13 Median 1.0503 0.97348 14.937 4 0 Median 1.1705 0.96961 1.9515 3 0 Plateau 0.99523 0.95752 31.499 3 0 Median 1.321 1.1244 NaN 1 0 Median 1.6645 1.6492 1.3895 2 2 Median NaN NaN NaN 0 0 Median 731550000 352810000 378740000 541880000 265400000 276480000 94413000 43120000 51293000 73736000 36386000 37350000 3494300 1474900 2019400 18025000 6432500 11593000 0 0 0 12847 1947 13365 65363;65364;65365;65366;65367;65368;65369;65370;65371;65372;65373;65374;65375;65376 65589;65590;65591;65592;65593;65594;65595;65596;65597;65598;65599;65600;65601;65602;65603;65604;65605 65591 17 GYIWNYGAIPQTWEDPGHNDK KKGKLRYVANLFPYKGYIWNYGAIPQTWED GAIPQTWEDPGHNDKHTGCCGDNDPIDVCE K G Y D K H 1 0 2 2 0 1 1 3 1 2 0 1 0 0 2 0 1 2 2 0 0 0 21 0 2460.1135 Q15181;Q5SQT6 Q15181 89 109 PPA1 Inorganic pyrophosphatase yes no 3 0.0017949 36.111 By MS/MS By MS/MS By matching 1 1 1 0.73977 0.71213 14.536 3 Median 0.73977 0.71213 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82341 0.78968 NaN 1 1 Median 0.69449 0.59266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10311000 5966100 4345000 4441300 2383500 2057800 0 0 0 5512100 3379400 2132800 357610 203160 154450 0 0 0 0 0 0 12848 2934 13366 65377;65378;65379 65606;65607 65607 2 GYIYVEAYK TPLQIKSVVAPEHVKGYIYVEAYKQTHVKQ APEHVKGYIYVEAYKQTHVKQAIEGVGNLR K G Y Y K Q 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 3 1 0 0 9 0 1104.5492 O00267 O00267 223 231 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.0011047 85.212 By MS/MS By MS/MS By matching 1 1 1 1.282 1.2528 15.146 3 Median 1.282 1.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9067 0.9737 NaN 1 0 Median 1.5215 1.2775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13292000 6476200 6816200 4667100 2295900 2371200 0 0 0 7275000 3654200 3620800 1350300 526110 824210 0 0 0 0 0 0 12849 1452 13367 65380;65381;65382 65608;65609;65610 65610 3 GYKHTLNQIDSVK AALAAVDYINKHLPRGYKHTLNQIDSVKVW PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI R G Y V K V 0 0 1 1 0 1 0 1 1 1 1 2 0 0 0 1 1 0 1 1 0 0 13 1 1501.7889 CON__P12763 CON__P12763 55 67 yes yes 2;3 0.0008274 84.507 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.078758 0.08349 117.98 5 Median 0.039536 0.037265 31.217 2 2 Median 0.74919 0.64947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.078758 0.084037 NaN 1 1 Median 0.093677 0.08349 NaN 1 1 Median 66278000 63396000 2881800 53163000 51398000 1764300 1772900 1232800 540090 0 0 0 0 0 0 6498200 6129500 368730 4844200 4635500 208700 + 12850 755 13368 65383;65384;65385;65386;65387;65388 65611;65612;65613;65614;65615;65616;65617 65617 7 GYKPPDEGPSEYQTIPLNK SAGKVNLGAFRTYPKGYKPPDEGPSEYQTI PDEGPSEYQTIPLNKIEDFGVHCKQYYALE K G Y N K I 0 0 1 1 0 1 2 2 0 1 1 2 0 0 4 1 1 0 2 0 0 0 19 1 2132.0426 Q92905;E5RHF2;E5RHH5 Q92905 192 210 COPS5 COP9 signalosome complex subunit 5 yes no 3 2.4717E-05 45.82 By MS/MS By MS/MS By MS/MS 1 1 2 0.70877 0.67533 15.623 4 Median NaN NaN NaN 0 0 Median 0.55957 0.50405 NaN 1 1 Median 0.67755 0.70614 NaN 1 0 Median 0.76374 0.67533 3.2043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29805000 17415000 12391000 0 0 0 4565400 2691300 1874100 22223000 12898000 9324700 3016400 1824700 1191700 0 0 0 0 0 0 12851 3565 13369 65389;65390;65391;65392 65618;65619;65620;65621;65622 65619 5 GYLADPAKFPEAR PPEELVPYYTDAKNRGYLADPAKFPEARLE NRGYLADPAKFPEARLELARKYGYILPDIT R G Y A R L 3 1 0 1 0 0 1 1 0 0 1 1 0 1 2 0 0 0 1 0 0 0 13 1 1433.7303 Q9P015;E5RIZ4 Q9P015 221 233 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2;3 0.00073738 83 By MS/MS By matching By MS/MS 1 1 1 0.83943 0.79218 34.903 3 Median 0.53637 0.53837 NaN 1 0 Median 1.1897 1.0805 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83943 0.79218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16295000 8608500 7686600 10774000 6516700 4257500 1842700 799090 1043600 0 0 0 3678300 1292800 2385500 0 0 0 0 0 0 12852 4197 13370 65393;65394;65395 65623;65624;65625 65623 3 GYLAVAVVK NYKTEGESCKNTPEKGYLAVAVVKTSDANI KNTPEKGYLAVAVVKTSDANINWNNLKDKK K G Y V K T 2 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 3 0 0 9 0 918.55385 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 448 456 yes no 2 0.0099525 64.757 By MS/MS By MS/MS 1 2 0.0026314 0.0022561 NaN 1 Median NaN NaN NaN 0 0 Median 0.0026314 0.0022561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17634000 17629000 4569.3 6694700 6694700 0 10939000 10934000 4569.3 0 0 0 0 0 0 0 0 0 0 0 0 + 12853 769 13371 65396;65397;65398 65626;65627;65628 65627 3 GYLDDPTVPR GQYVGNPDGEGEATKGYLDDPTVPRGSTTA GEATKGYLDDPTVPRGSTTATFAAVVLYVE K G Y P R G 0 1 0 2 0 0 0 1 0 0 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1131.556 P11413;E7EUI8 P11413 321 330 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.0011713 67.897 By MS/MS 1 0.56811 0.47759 NaN 1 Median NaN NaN NaN 0 0 Median 0.56811 0.47759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14710000 8932700 5777000 0 0 0 14710000 8932700 5777000 0 0 0 0 0 0 0 0 0 0 0 0 12854 1964 13372 65399 65629 65629 1 GYLDKLEPSK MAIEEQVAVIYAGVRGYLDKLEPSKITKFE YAGVRGYLDKLEPSKITKFENAFLSHVVSQ R G Y S K I 0 0 0 1 0 0 1 1 0 0 2 2 0 0 1 1 0 0 1 0 0 0 10 1 1148.6077 P25705 P25705 494 503 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.0024191 118.18 By MS/MS By MS/MS By matching 1 1 1 1.3153 1.2292 44.822 3 Median 0.84093 0.79795 NaN 1 0 Median 1.3153 1.2292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1938 1.9553 NaN 1 0 Median 58762000 27527000 31235000 33877000 16674000 17203000 23107000 10300000 12807000 0 0 0 0 0 0 0 0 0 1778200 553550 1224700 12855 2135 13373 65400;65401;65402 65630;65631;65632;65633;65634 65634 5 GYLGAVKPLAGAAGAPGK KSHPPDKWAQGAGAKGYLGAVKPLAGAAGA GAVKPLAGAAGAPGKGSEKGPPNGMMPAPK K G Y G K G 5 0 0 0 0 0 0 5 0 0 2 2 0 0 2 0 0 0 1 1 0 0 18 1 1596.8988 O00257 O00257 206 223 CBX4 E3 SUMO-protein ligase CBX4 yes yes 2;3 2.7514E-05 61.344 By matching By MS/MS By matching 1 2 1 0.48123 0.54091 71.64 4 Median 0.16193 0.16062 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48123 0.54091 23.501 2 0 Median 0.88543 0.81757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16864000 11146000 5718100 3955900 3134900 820970 0 0 0 12505000 7775900 4729500 402550 234960 167590 0 0 0 0 0 0 12856 1450 13374 65403;65404;65405;65406 65635;65636 65636 2 GYLGPEQLPDCLK VAADLSHIETKAAVKGYLGPEQLPDCLKGC VKGYLGPEQLPDCLKGCDVVVIPAGVPRKP K G Y L K G 0 0 0 1 1 1 1 2 0 0 3 1 0 0 2 0 0 0 1 0 0 0 13 0 1488.7283 P40926 P40926 79 91 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 0.0028084 63.283 By MS/MS 1 0.65109 0.63243 NaN 1 Median 0.65109 0.63243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2994800 1799700 1195100 2994800 1799700 1195100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12857 2292 13375 65407 65637 65637 1 GYLGPPHQGPPMHHASGHDTR RGGTLLSVTGEVEPRGYLGPPHQGPPMHHA HQGPPMHHASGHDTRGPSSHEMRGGPLGDP R G Y T R G 1 1 0 1 0 1 0 4 4 0 1 0 1 0 4 1 1 0 1 0 0 0 21 0 2248.0345 Q9H0L4 Q9H0L4 353 373 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 3;4;5 9.0983E-05 36.111 By matching By MS/MS By MS/MS 1 3 3 0.57053 0.52038 16.025 7 Median NaN NaN NaN 0 0 Median 0.70353 0.61883 NaN 1 0 Median 0.42651 0.44113 17.813 3 1 Median 0.64419 0.54201 14.476 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20972000 14209000 6763600 0 0 0 617920 286540 331380 18910000 13030000 5879800 1444400 891990 552410 0 0 0 0 0 0 12858 3927 13376 65408;65409;65410;65411;65412;65413;65414 65638;65639;65640;65641;65642;65643 65638 6 GYLGPPHQGPPMHHVPGHESR RGGTLLSVTGEVEPRGYLGPPHQGPPMHHV HQGPPMHHVPGHESRGPPPHELRGGPLPEP R G Y S R G 0 1 0 0 0 1 1 4 4 0 1 0 1 0 5 1 0 0 1 1 0 0 21 0 2286.0865 P33240;E7EWR4;E9PID8 P33240 345 365 CSTF2 Cleavage stimulation factor subunit 2 yes no 3;4;5 8.2664E-09 50.883 By MS/MS By MS/MS 3 4 0.58882 0.49387 15.58 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43524 0.44147 24.164 3 2 Median 0.61893 0.51943 8.9666 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67704000 44288000 23416000 0 0 0 0 0 0 46083000 31244000 14839000 21621000 13044000 8577400 0 0 0 0 0 0 12859 2222 13377 65415;65416;65417;65418;65419;65420;65421 65644;65645;65646;65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657 65652 14 GYLISGSSYAR KLTLIDPETLLPRLKGYLISGSSYARSSVV PRLKGYLISGSSYARSSVVTAVKFTISDHP K G Y A R S 1 1 0 0 0 0 0 2 0 1 1 0 0 0 0 3 0 0 2 0 0 0 11 0 1172.5826 Q86VP6;A0A0C4DGH5 Q86VP6 972 982 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.0001815 105.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1.1385 1.0263 131.42 7 Median 1.1517 1.1082 NaN 1 0 Median 1.1385 0.94571 NaN 1 0 Median 2.2682 2.6542 126.01 2 0 Median 1.212 1.0263 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.17011 0.15452 54.51 2 0 Median 93925000 41620000 52305000 23545000 11071000 12474000 20891000 9539700 11351000 35758000 14037000 21721000 12415000 5842500 6572600 0 0 0 1315600 1129300 186260 12860 3288 13378 65422;65423;65424;65425;65426;65427;65428 65658;65659;65660;65661;65662;65663 65662 6 GYLNKDTHDQLSEPSEVR PRLGFHLPLEVAYQRGYLNKDTHDQLSEPS NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ R G Y V R S 0 1 1 2 0 1 2 1 1 0 2 1 0 0 1 2 1 0 1 1 0 0 18 1 2086.992 Q15149;H0YDN1 Q15149 3964 3981 PLEC Plectin yes no 3;4 1.9232E-14 121.03 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 1 2 1.0063 1.0867 15.271 10 Median 1.0427 1.0846 8.318 3 0 Median 1.2635 1.174 13.989 2 0 Median 0.9259 1.073 6.9285 2 0 Median NaN NaN NaN 0 0 Median 0.96014 1.0887 NaN 1 0 Median 1.013 0.9012 31.256 2 0 Median 109020000 52840000 56175000 61368000 30962000 30406000 14916000 6662200 8253700 20436000 9310800 11126000 0 0 0 8388400 4071000 4317400 3906500 1834400 2072200 12861 2933 13379 65429;65430;65431;65432;65433;65434;65435;65436;65437;65438 65664;65665;65666;65667;65668;65669;65670;65671;65672 65665 9 GYLPSHYER YEWGRQNTDKGNNPKGYLPSHYERVQMLLS KGNNPKGYLPSHYERVQMLLSDRFLGFFMV K G Y E R V 0 1 0 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 2 0 0 0 9 0 1120.5302 Q6P2Q9;I3L1T8 Q6P2Q9 2250 2258 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.001354 82.452 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 0.877 0.89502 12.509 7 Median 0.877 0.88102 NaN 1 0 Median 1.1284 0.95501 14.345 2 0 Median 0.84677 0.9246 NaN 1 0 Median 1.0869 0.9542 NaN 1 0 Median 0.86368 0.89502 NaN 1 0 Median 0.84476 0.70108 NaN 1 0 Median 30231000 15407000 14824000 1473000 393500 1079500 4755700 2365100 2390600 10598000 5822000 4776200 2104500 1031000 1073600 7210300 3859900 3350400 4089000 1935500 2153600 12862 3157 13380 65439;65440;65441;65442;65443;65444;65445 65673;65674;65675;65676;65677;65678;65679;65680;65681 65674 9 GYLTDLNSMIPTHGGDINDIKK QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG SMIPTHGGDINDIKKARLLLKSVRETNPHH K G Y K K A 0 0 2 3 0 0 0 3 1 3 2 2 1 0 1 1 2 0 1 0 0 0 22 1 2401.1948 O94906 O94906 272 293 PRPF6 Pre-mRNA-processing factor 6 yes yes 3;4 0.012492 16.716 By matching By matching By MS/MS By MS/MS 2 1 2 1 0.66959 0.73028 29.306 6 Median 0.56847 0.60044 27.095 2 0 Median 0.65272 0.61959 NaN 1 0 Median 0.76276 0.87136 24.388 2 0 Median 1.107 1.0545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21487000 11590000 9897600 5488500 3516100 1972400 380650 233940 146710 14732000 7401900 7330400 885660 437600 448060 0 0 0 0 0 0 12863 1735 13381 65446;65447;65448;65449;65450;65451 65682;65683;65684;65685;65686 65682 5 GYLTPTSAR DSEPLGIEEAQIGKRGYLTPTSAREHLSAL AQIGKRGYLTPTSAREHLSALWKNEGFFLN R G Y A R E 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 2 0 1 0 0 0 9 0 964.49779 O95602;B9ZVN9 O95602 254 262 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.00098836 86.794 By MS/MS 1 1.3777 1.5212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3777 1.5212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4447300 1716000 2731200 0 0 0 0 0 0 4447300 1716000 2731200 0 0 0 0 0 0 0 0 0 12864 1781 13382 65452 65687 65687 1 GYNATVLAYGQTGSGK VFNTAVAPLIKGVFKGYNATVLAYGQTGSG YNATVLAYGQTGSGKTYSMGGAYTAEQENE K G Y G K T 2 0 1 0 0 1 0 4 0 0 1 1 0 0 0 1 2 0 2 1 0 0 16 0 1585.7736 O95239;Q2VIQ3 O95239 79 94 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 5.8317E-10 130.44 By MS/MS By MS/MS By matching 1 2 1 0.92216 0.9019 60.299 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89276 0.95151 NaN 1 0 Median 0.92216 0.8158 6.6168 2 0 Median 2.4126 2.8362 NaN 1 0 Median NaN NaN NaN 0 0 Median 33135000 14877000 18259000 0 0 0 0 0 0 21914000 10249000 11664000 7797700 3843100 3954600 3423800 784080 2639700 0 0 0 12865 1757 13383 65453;65454;65455;65456 65688;65689;65690;65691;65692 65691 5 GYNDDYYEESYFTTR YDLPKKEDALLYQSKGYNDDYYEESYFTTR GYNDDYYEESYFTTRTYGEPESAGPSRAVR K G Y T R T 0 1 1 2 0 0 2 1 0 0 0 0 0 1 0 1 2 0 4 0 0 0 15 0 1921.7643 P50402;Q5HY57 P50402 89 103 EMD Emerin yes no 2 0.00034378 55.452 By MS/MS By matching By matching 1 2 2 1.0652 1.1253 11.589 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0373 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1315 1.1917 8.1136 2 0 Median 1.2524 1.0434 14.917 2 0 Median 4422200 2006800 2415400 0 0 0 0 0 0 2195500 1023900 1171600 0 0 0 1942400 867280 1075100 284300 115600 168690 12866 2412 13384 65457;65458;65459;65460;65461 65693;65694 65693 2 GYNENVYTEDGKLDIWSK IVVMRSLFIDRTIVKGYNENVYTEDGKLDI ENVYTEDGKLDIWSKSNYQVFQKVTDHATT K G Y S K S 0 0 2 2 0 0 2 2 0 1 1 2 0 0 0 1 1 1 2 1 0 0 18 1 2129.9906 Q6P2C8;A0A494C0K7 Q6P2C8 216 233 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 3 0.00020636 50.387 By MS/MS 1 0.98704 1.0328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98704 1.0328 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5912900 2750800 3162100 0 0 0 0 0 0 5912900 2750800 3162100 0 0 0 0 0 0 0 0 0 12867 460 13385 65462 65695 65695 1 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK QSPYSNYGPPQGKQKGYNHGQGSYSYSNSY SPGGGGGSDYNYESKFNYSGSGGRSGGNSY K G Y S K F 0 0 4 1 0 1 1 8 1 0 0 1 0 0 1 7 0 0 6 0 0 0 31 0 3252.2929 Q12906 Q12906 776 806 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 1.1152E-62 157.08 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.87825 0.79533 10.735 5 Median NaN NaN NaN 0 0 Median 0.81112 0.70975 NaN 1 0 Median 0.87825 0.95237 NaN 1 0 Median 0.92348 0.81541 NaN 1 0 Median 0.78309 0.79533 NaN 1 0 Median 0.94022 0.7728 NaN 1 0 Median 67762000 33255000 34508000 0 0 0 1496600 961640 534980 19385000 9057600 10328000 17463000 8039400 9423800 25414000 13253000 12161000 4002900 1942900 2060000 12868 2769 13386 65463;65464;65465;65466;65467 65696;65697;65698;65699;65700;65701;65702;65703 65700 8 GYNLLKPMGK VDIVMDPLGGSDTAKGYNLLKPMGKVVTYG SDTAKGYNLLKPMGKVVTYGMANLLTGPKR K G Y G K V 0 0 1 0 0 0 0 2 0 0 2 2 1 0 1 0 0 0 1 0 0 0 10 1 1119.6111 Q99536;K7ESA3;K7ENX2;K7EM19 Q99536 272 281 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.0031563 96.253 By MS/MS By MS/MS 2 1 1.0765 0.97091 12.944 3 Median 0.98527 0.93135 17.988 2 0 Median 1.0765 0.97091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27460000 14181000 13279000 19166000 10394000 8771800 8294000 3787300 4506700 0 0 0 0 0 0 0 0 0 0 0 0 12869 3750 13387 65468;65469;65470 65704;65705;65706;65707;65708 65705 5 GYPHWPAR TRDFKPGDLIFAKMKGYPHWPARVDEVPDG LIFAKMKGYPHWPARVDEVPDGAVKPPTNK K G Y A R V 1 1 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 1 1 0 0 0 8 0 982.47733 Q7Z4V5;M0R0J3;P51858;O75475;Q9Y3E1;H3BPQ6 O75475 17 24 HDGFRP2;HDGF;PSIP1;HDGFRP3 Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor-related protein 3 no no 2 0.0057021 74.335 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 3 2 2 0.88054 0.83865 35.26 13 Median 1.0746 1.0647 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.80048 0.83865 7.8311 5 1 Median 1.1022 0.94912 12.882 3 0 Plateau 0.85305 0.87312 45.699 2 0 Median 0.61363 0.51467 85.734 2 1 Median 116880000 58252000 58627000 5713800 2540900 3172900 0 0 0 73968000 37610000 36358000 27631000 12964000 14667000 7272500 3846600 3425900 2293900 1291200 1002700 12870 1674;2444;3248;4426 13388 65471;65472;65473;65474;65475;65476;65477;65478;65479;65480;65481;65482;65483 65709;65710;65711;65712;65713;65714;65715;65716;65717;65718;65719;65720;65721;65722;65723;65724;65725;65726;65727 65715 19 GYPPEDIFNLVGK ILTMDMLTVKVGEPKGYPPEDIFNLVGKKV PKGYPPEDIFNLVGKKVLVTVEEDDTIMEE K G Y G K K 0 0 1 1 0 0 1 2 0 1 1 1 0 1 2 0 0 0 1 1 0 0 13 0 1447.7347 Q9NR45 Q9NR45 321 333 NANS Sialic acid synthase yes yes 2 0.022193 29.767 By MS/MS By MS/MS By matching 1 1 1 1.0132 0.90751 9.8693 3 Plateau 1.0408 0.97219 NaN 1 0 Median 0.98632 0.84713 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.937 0.80289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9730300 4509900 5220500 5992300 2611300 3381000 3707500 1884900 1822600 0 0 0 30529 13701 16828 0 0 0 0 0 0 12871 4079 13389 65484;65485;65486 65728;65729 65728 2 GYPPEDIFNLVGKK ILTMDMLTVKVGEPKGYPPEDIFNLVGKKV KGYPPEDIFNLVGKKVLVTVEEDDTIMEEL K G Y K K V 0 0 1 1 0 0 1 2 0 1 1 2 0 1 2 0 0 0 1 1 0 0 14 1 1575.8297 Q9NR45 Q9NR45 321 334 NANS Sialic acid synthase yes yes 3 0.0082711 25.718 By MS/MS 1 0.78714 0.73221 NaN 1 Median 0.78714 0.73221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9786400 6031900 3754500 9786400 6031900 3754500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12872 4079 13390 65487 65730;65731 65731 2 GYPTLLLFR DCTAERNICSKYSVRGYPTLLLFRGGKKVS SKYSVRGYPTLLLFRGGKKVSEHSGGRDLD R G Y F R G 0 1 0 0 0 0 0 1 0 0 3 0 0 1 1 0 1 0 1 0 0 0 9 0 1078.6175 Q8NBS9 Q8NBS9 395 403 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.0068944 53.166 By MS/MS By matching By matching By matching 2 1 1 1 1.2601 1.2203 16.459 5 Median 1.0392 1.0354 23.229 2 0 Median 1.549 1.3062 NaN 1 0 Median 1.1183 1.1262 NaN 1 0 Median 1.4936 1.3041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11739000 5373100 6365500 7871900 3566200 4305800 292680 119260 173420 2944000 1404900 1539100 629990 282750 347240 0 0 0 0 0 0 12873 3410 13391 65488;65489;65490;65491;65492 65732;65733 65732 2 GYPTLLWFR DCTQHYELCSGNQVRGYPTLLWFRDGKKVD SGNQVRGYPTLLWFRDGKKVDQYKGKRDLE R G Y F R D 0 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 1 1 1 0 0 0 9 0 1151.6128 Q8NBS9 Q8NBS9 261 269 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.0030211 67.981 By MS/MS By MS/MS 1 1 1.1951 1.0211 5.6426 2 Median NaN NaN NaN 0 0 Median 1.1604 0.98113 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2307 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13428000 6102000 7326100 0 0 0 6133900 2813900 3320000 0 0 0 7294200 3288100 4006100 0 0 0 0 0 0 12874 3410 13392 65493;65494 65734;65735 65735 2 GYQGYPGGDYSGGPQDGGAGK TPTLNQLLTSPSSARGYQGYPGGDYSGGPQ GGDYSGGPQDGGAGKGPADMASQCWGAAAA R G Y G K G 1 0 0 2 0 2 0 9 0 0 0 1 0 0 2 1 0 0 3 0 0 0 21 0 1986.8344 O14497 O14497 307 327 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 1.7128E-22 113.76 By MS/MS By MS/MS 1 1 0.86438 0.86529 22.411 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6681 0.73848 NaN 1 0 Median 1.1183 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11643000 7450900 4191700 0 0 0 0 0 0 9880400 6524300 3356100 1762200 926580 835570 0 0 0 0 0 0 12875 1480 13393 65495;65496 65736;65737;65738;65739 65737 4 GYQPTPAMAK PGDALPPVSSPHTHRGYQPTPAMAKYVKIL PHTHRGYQPTPAMAKYVKILYDFTARNANE R G Y A K Y 2 0 0 0 0 1 0 1 0 0 0 1 1 0 2 0 1 0 1 0 0 0 10 0 1062.5168 A0A3B3ISQ4;Q9H6S3;A0A087WX39 A0A3B3ISQ4 486 495 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.052592 27.254 By matching By MS/MS 1 1 0.83864 0.80334 31.121 2 Median 0.63313 0.64465 NaN 1 0 Median 1.1109 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1489300 748030 741300 642030 354410 287620 847290 393610 453680 0 0 0 0 0 0 0 0 0 0 0 0 12876 426 13394 65497;65498 65740 65740 1 GYQVPVLGTPSLLGQSLLHGQLIPTTGPVR KGTSSIAITALMEEKGYQVPVLGTPSLLGQ SLLHGQLIPTTGPVRINTARPGGGRPGWEH K G Y V R I 0 1 0 0 0 3 0 5 1 1 6 0 0 0 4 2 3 0 1 3 0 0 30 0 3097.7288 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 463 492 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 0.044515 9.97 By MS/MS 3 0.53528 0.55672 5.067 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53528 0.55672 5.067 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1831800 1127900 703830 0 0 0 0 0 0 1831800 1127900 703830 0 0 0 0 0 0 0 0 0 12877 3251 13395 65499;65500;65501 65741;65742 65742 2 GYSDRDGYGR RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS DYPSRGYSDRDGYGRDRDYSDHPSGGSYRD R G Y G R D 0 2 0 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 2 0 0 0 10 1 1144.4897 P38159;H3BT71;H0Y6E7;H3BUY5 P38159 259 268 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 8.2819E-05 148.52 By MS/MS By matching 5 1 0.98697 1.0599 12.852 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0477 1.1023 8.3036 5 0 Plateau 1.4923 1.3125 NaN 1 0 Median 41795000 20936000 20859000 0 0 0 0 0 0 0 0 0 0 0 0 41506000 20826000 20680000 288810 110000 178820 12878 2273 13396 65502;65503;65504;65505;65506;65507 65743;65744;65745;65746;65747 65745 5 GYSDRDGYGRDR RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS PSRGYSDRDGYGRDRDYSDHPSGGSYRDSY R G Y D R D 0 3 0 3 0 0 0 3 0 0 0 0 0 0 0 1 0 0 2 0 0 0 12 2 1415.6178 P38159;H3BT71;H0Y6E7;H3BUY5 P38159 259 270 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 3 0.055255 16.137 By MS/MS 1 0.93259 1.2288 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93259 1.2288 NaN 1 0 Median NaN NaN NaN 0 0 Median 1286600 652410 634160 0 0 0 0 0 0 0 0 0 0 0 0 1286600 652410 634160 0 0 0 12879 2273 13397 65508 65748 65748 1 GYSFSLTTFSPSGK ______________________________ RGYSFSLTTFSPSGKLVQIEYALAAVAGGA R G Y G K L 0 0 0 0 0 0 0 2 0 0 1 1 0 2 1 4 2 0 1 0 0 0 14 0 1477.7089 A0A024RA52;P25787;H3BT36 A0A024RA52 5 18 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 2.2819E-07 158.41 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.0616 0.96674 14.584 5 Median 0.97799 0.90201 NaN 1 0 Median 0.98904 0.83142 NaN 1 0 Median 1.258 1.1981 NaN 1 0 Median 1.1789 0.96674 NaN 1 0 Median 1.0616 1.0883 NaN 1 0 Median NaN NaN NaN 0 0 Median 89793000 45644000 44149000 76638000 38336000 38302000 4966000 2991600 1974400 3396600 1548300 1848200 341880 163550 178330 4450900 2604900 1846000 0 0 0 12880 7 13398 65509;65510;65511;65512;65513 65749;65750;65751;65752;65753;65754;65755;65756;65757;65758 65753 10 GYSFTTTAER GRDLTDYLMKILTERGYSFTTTAEREIVRD ILTERGYSFTTTAEREIVRDIKEKLCYVAL R G Y E R E 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 3 0 1 0 0 0 10 0 1131.5197 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L4N8;A0A2R8YEA7 P63261 197 206 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2 2.4525E-23 186.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 12 8 7 8 7 1.0998 0.99586 20 50 Median 1.1899 1.1387 24.752 11 0 Plateau 1.1966 0.99873 22.355 11 0 Median 0.90652 0.9405 5.2384 8 0 Median 1.186 0.9652 20.408 7 0 Median 0.99822 1.0153 21.492 7 0 Median 1.1814 0.9624 11.903 6 0 Median 8236800000 3766100000 4470700000 2883600000 1287000000 1596600000 2652000000 1174000000 1478000000 1712700000 889930000 822750000 229630000 102430000 127200000 510330000 200420000 309900000 248490000 112360000 136130000 12881 2625 13399 65514;65515;65516;65517;65518;65519;65520;65521;65522;65523;65524;65525;65526;65527;65528;65529;65530;65531;65532;65533;65534;65535;65536;65537;65538;65539;65540;65541;65542;65543;65544;65545;65546;65547;65548;65549;65550;65551;65552;65553;65554;65555;65556;65557;65558;65559;65560;65561;65562;65563;65564;65565;65566 65759;65760;65761;65762;65763;65764;65765;65766;65767;65768;65769;65770;65771;65772;65773;65774;65775;65776;65777;65778;65779;65780;65781;65782;65783;65784;65785;65786;65787;65788;65789;65790;65791;65792;65793;65794;65795;65796;65797;65798;65799;65800;65801;65802;65803;65804;65805;65806;65807;65808;65809;65810;65811;65812;65813;65814;65815;65816;65817;65818;65819;65820;65821;65822;65823;65824;65825;65826;65827;65828;65829;65830;65831;65832;65833;65834;65835;65836;65837;65838;65839;65840;65841;65842;65843;65844;65845;65846;65847 65793 88 GYSFTTTAEREIVR GRDLTDYLMKILTERGYSFTTTAEREIVRD RGYSFTTTAEREIVRDIKEKLCYVALDFEQ R G Y V R D 1 2 0 0 0 0 2 1 0 1 0 0 0 1 0 1 3 0 1 1 0 0 14 1 1628.8158 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L4N8;A0A2R8YEA7 P63261 197 210 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2;3 2.1769E-08 101.6 By MS/MS By MS/MS 2 3 0.81031 0.86489 16.339 5 Median 0.90685 0.95417 16.722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81031 0.86489 19.842 3 0 Median NaN NaN NaN 0 0 Median 75823000 35990000 39834000 52440000 24014000 28425000 0 0 0 0 0 0 0 0 0 23383000 11975000 11408000 0 0 0 12882 2625 13400 65567;65568;65569;65570;65571 65848;65849;65850;65851;65852;65853;65854 65851 7 GYSIPFMGSDVSVVR KLKRRWPISYCRELKGYSIPFMGSDVSVVR GYSIPFMGSDVSVVRRTQRYLYENLEESPV K G Y V R R 0 1 0 1 0 0 0 2 0 1 0 0 1 1 1 3 0 0 1 3 0 0 15 0 1612.7919 Q8NBX0 Q8NBX0 243 257 SCCPDH Saccharopine dehydrogenase-like oxidoreductase yes yes 2 0.00035469 59.542 By MS/MS 1 0.83845 0.84411 NaN 1 Median 0.83845 0.84411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2129800 986280 1143600 2129800 986280 1143600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12883 3413 13401 65572 65855;65856 65855 2 GYSLASLLAK RPVVRLPSLKHQSNKGYSLASLLAKVAAGK HQSNKGYSLASLLAKVAAGKEKSSNVKNEN K G Y A K V 2 0 0 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 1 0 0 0 10 0 1021.5808 A0A3B3IUB9;H7C094;H7C3P0;Q9NR09 Q9NR09 1256 1265 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.047132 28.918 By MS/MS 1 1.8826 1.8672 NaN 1 Median 1.8826 1.8672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2851200 970870 1880300 2851200 970870 1880300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12884 4073;445 13402 65573 65857 65857 1 GYSLVSGGTDNHLVLVDLRPK VLKNARAMADALLERGYSLVSGGTDNHLVL GGTDNHLVLVDLRPKGLDGARAERVLELVS R G Y P K G 0 1 1 2 0 0 0 3 1 0 4 1 0 0 1 2 1 0 1 3 0 0 21 1 2239.1961 P34897;H0YIZ0;G3V2Y4 P34897 369 389 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2;3;4 7.9408E-12 67.43 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 3 3 1 1.044 0.95372 19.223 12 Median 0.82242 0.81923 15.936 2 1 Median 1.161 1.059 7.5876 3 0 Plateau 0.8519 0.86439 7.1512 3 0 Plateau 1.3119 1.2484 1.3652 3 0 Median NaN NaN NaN 0 0 Median 1.375 1.2706 NaN 1 0 Median 90741000 44449000 46293000 31872000 16709000 15163000 20651000 9372100 11279000 28019000 14050000 13969000 9992800 4225200 5767600 0 0 0 205940 92347 113590 12885 2228 13403 65574;65575;65576;65577;65578;65579;65580;65581;65582;65583;65584;65585 65858;65859;65860;65861;65862;65863;65864;65865;65866 65858 9 GYSSLLKR RGGFNTFRDRENYDRGYSSLLKRDFGAKTQ DRENYDRGYSSLLKRDFGAKTQNGVYSAAN R G Y K R D 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 1 0 0 0 8 1 922.52362 J3KTA4;P17844 J3KTA4 517 524 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.00010434 114.19 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.453 1.3992 44.447 7 Median 1.7065 1.7151 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.545 1.6392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4046 1.497 9.556 2 0 Median 1.3843 1.2438 57.203 3 1 Median 31429000 12899000 18530000 4657300 1261900 3395400 0 0 0 4503600 1965400 2538100 0 0 0 9487300 3707100 5780100 12781000 5964200 6816900 12886 1334 13404 65586;65587;65588;65589;65590;65591;65592 65867;65868;65869;65870;65871;65872 65867 6 GYTIPLDKR EWKIPPCISNWKNAKGYTIPLDKRLAADGR NWKNAKGYTIPLDKRLAADGRGLQTVHINE K G Y K R L 0 1 0 1 0 0 0 1 0 1 1 1 0 0 1 0 1 0 1 0 0 0 9 1 1061.5869 Q13573;G3V3A4;G3V4X8;G3V5R3 Q13573 259 267 SNW1 SNW domain-containing protein 1 yes no 2 0.00068664 121.62 By matching By MS/MS By matching 1 1 1 0.89826 0.84067 7.2437 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74989 0.79612 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89826 0.91896 NaN 1 0 Median 0.92869 0.84067 NaN 1 0 Median 19297000 10348000 8948600 0 0 0 0 0 0 3404600 1763700 1640900 0 0 0 12535000 6640200 5894800 3357500 1944600 1412900 12887 2826 13405 65593;65594;65595 65873;65874 65874 2 GYTLAALGDLAQTLGR EVARILLGEGPTNQKGYTLAALGDLAQTLG YTLAALGDLAQTLGRARKQAVAREERDHLY K G Y G R A 3 1 0 1 0 1 0 3 0 0 4 0 0 0 0 0 2 0 1 0 0 0 16 0 1618.8679 Q9UHR6;E9PQB8 Q9UHR6 304 319 ZNHIT2 Zinc finger HIT domain-containing protein 2 yes no 2 0.00013515 56.225 By matching By matching By MS/MS 1 1 2 1.1134 1.0471 13.266 4 Median 1.1507 1.174 NaN 1 0 Median 1.1886 1.0333 NaN 1 0 Median 0.94836 0.95224 15.316 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2400500 1099300 1301300 396910 175880 221030 783640 337550 446090 1220000 585830 634140 0 0 0 0 0 0 0 0 0 12888 4282 13406 65596;65597;65598;65599 65875;65876 65875 2 GYTLVEYETYK KNIHLNLDRRTGYLKGYTLVEYETYKEAQA GYLKGYTLVEYETYKEAQAAMEGLNGQDLM K G Y Y K E 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 2 0 3 1 0 0 11 0 1364.65 Q9Y5S9;A0A0J9YW13 Q9Y5S9 115 125 RBM8A RNA-binding protein 8A yes no 2 7.4743E-08 130.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 4 3 1.322 1.1694 12.607 14 Median 1.3597 1.278 1.7323 3 2 Median 1.3291 1.2504 18.522 3 0 Median 1.2341 1.1574 NaN 1 0 Median 1.812 1.5022 NaN 1 0 Median 1.005 1.0789 7.7049 3 0 Median 1.315 1.0813 1.4844 3 0 Plateau 282190000 130700000 151490000 49335000 20565000 28770000 3926600 1676800 2249800 29078000 10978000 18100000 6054500 1973600 4080900 141530000 73162000 68367000 52267000 22346000 29921000 12889 4469 13407 65600;65601;65602;65603;65604;65605;65606;65607;65608;65609;65610;65611;65612;65613;65614 65877;65878;65879;65880;65881;65882;65883;65884;65885;65886;65887;65888;65889;65890;65891 65877 15 GYTSIFNMETQQR LVSSDPSHMVASFSKGYTSIFNMETQQRIL SKGYTSIFNMETQQRILTLESNVDTTANSS K G Y Q R I 0 1 1 0 0 2 1 1 0 1 0 0 1 1 0 1 2 0 1 0 0 0 13 0 1573.7195 O43815 O43815 637 649 STRN Striatin yes yes 2 0.00031274 77.379 By MS/MS 1 0.91643 0.8909 NaN 1 Median 0.91643 0.8909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3286900 1689300 1597500 3286900 1689300 1597500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12890 1593 13408 65615 65892;65893 65893 2 GYVGSIQPHGVFFR EINSIQDIKEGQLLRGYVGSIQPHGVFFRL RGYVGSIQPHGVFFRLGPSVVGLARYSHVS R G Y F R L 0 1 0 0 0 1 0 3 1 1 0 0 0 2 1 1 0 0 1 2 0 0 14 0 1562.7994 Q14690;A0A3B3IUD7 Q14690 1329 1342 PDCD11 Protein RRP5 homolog yes no 2;3 7.9544E-10 163.94 By matching By MS/MS By MS/MS By matching 1 5 3 2 1.0111 1.0599 47.268 11 Median NaN NaN NaN 0 0 Median 1.4557 1.2354 NaN 1 0 Median 0.96518 1.0261 12.7 5 1 Median NaN NaN NaN 0 0 Median 1.0111 1.0403 86.454 3 0 Median 1.388 1.1385 10.122 2 0 Median 117820000 59577000 58239000 0 0 0 904660 515440 389230 97301000 48417000 48884000 0 0 0 18213000 10048000 8165000 1397600 596640 800960 12891 448 13409 65616;65617;65618;65619;65620;65621;65622;65623;65624;65625;65626 65894;65895;65896;65897;65898;65899;65900;65901;65902;65903;65904 65899 11 GYVKEQFAWR PNLHVMKAMQSLKSRGYVKEQFAWRHFYWY SLKSRGYVKEQFAWRHFYWYLTNEGIQYLR R G Y W R H 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 1 1 1 0 0 10 1 1282.6459 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;A0A1W2PQS6;S4R435 P46783 56 65 RPS10;RPS10-NUDT3 40S ribosomal protein S10 no no 2;3 1.3531E-05 138.98 By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 1.1833 1.0798 28.876 7 Median 1.1251 1.1064 17.393 2 0 Median 0.89978 0.79394 38.73 2 0 Median 1.4737 1.5141 NaN 1 0 Median 1.2198 1.0798 NaN 1 0 Median 1.0937 1.2293 NaN 1 0 Median NaN NaN NaN 0 0 Median 53876000 25368000 28508000 42466000 19918000 22548000 7030000 3598100 3431900 2042700 750490 1292200 909250 441480 467770 1428100 659660 768430 0 0 0 12892 2346;345 13410 65627;65628;65629;65630;65631;65632;65633 65905;65906;65907;65908;65909;65910;65911 65906 7 GYVLPVVSYIR LKKTLLDRMVHLLSRGYVLPVVSYIRKCLE LLSRGYVLPVVSYIRKCLEKLDTDISLIRY R G Y I R K 0 1 0 0 0 0 0 1 0 1 1 0 0 0 1 1 0 0 2 3 0 0 11 0 1264.718 H0UI80;X6RLT1;Q8IXH7 H0UI80 516 526 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.0029089 50.878 By matching By MS/MS 2 1 0.9283 0.8279 12.338 3 Median NaN NaN NaN 0 0 Median 0.96502 0.84907 3.5714 2 0 Median 0.65278 0.68881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2594500 1358800 1235700 0 0 0 1253200 651260 601910 1341300 707570 633740 0 0 0 0 0 0 0 0 0 12893 1138 13411 65634;65635;65636 65912 65912 1 GYVQDLLR KIQRDFMLSFSRDPKGYVQDLLRSQSRDLK SFSRDPKGYVQDLLRSQSRDLKVMTDVAGN K G Y L R S 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 962.51853 Q6STE5 Q6STE5 418 425 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 2 0.0034678 94.407 By MS/MS By matching By matching 1 1 1 1.2006 1.0617 14.989 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95946 0.98022 NaN 1 0 Median 1.5035 1.3102 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2006 1.0617 NaN 1 0 Median 6993500 3626100 3367500 0 0 0 0 0 0 6463800 3396800 3067000 456310 195870 260450 0 0 0 73454 33395 40059 12894 3183 13412 65637;65638;65639 65913;65914 65913 2 GYVVWQEVFDNK FYIQTLLDIVSSYGKGYVVWQEVFDNKVKI YGKGYVVWQEVFDNKVKIQPDTIIQVWRED K G Y N K V 0 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 0 1 1 3 0 0 12 0 1482.7143 H3BS10;H3BP20;P06865 H3BS10 369 380 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.023918 31.074 By MS/MS By matching By matching By matching 1 1 1 1 1.0421 1.0462 23.405 4 Median 1.0525 1.0076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80788 0.70917 NaN 1 0 Median 1.0318 1.0864 NaN 1 0 Median 1.4297 1.2215 NaN 1 0 Median 5378900 2456500 2922400 3021800 1424100 1597700 0 0 0 0 0 0 105810 52355 53456 1729300 776970 952320 521980 203030 318950 12895 1218 13413 65640;65641;65642;65643 65915;65916 65915 2 GYYSPGIVSTR VKPAQASHTNYLLMRGYYSPGIVSTRNLNP LLMRGYYSPGIVSTRNLNPNDSIVVNSCQM R G Y T R N 0 1 0 0 0 0 0 2 0 1 0 0 0 0 1 2 1 0 2 1 0 0 11 0 1198.5982 Q12789 Q12789 1650 1660 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00011287 145.72 By MS/MS By MS/MS 1 1 0.85464 0.81599 10.167 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80438 0.87682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90803 0.75939 NaN 1 0 Median 37855000 20746000 17110000 0 0 0 0 0 0 36727000 20267000 16459000 0 0 0 0 0 0 1128900 478760 650170 12896 2758 13414 65644;65645 65917;65918;65919 65917 3 GYYSPYSVSGSGSTAGSR GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA SPYSVSGSGSTAGSRTGSRTGSRAGSRRGS K G Y S R T 1 1 0 0 0 0 0 4 0 0 0 0 0 0 1 6 1 0 3 1 0 0 18 0 1781.7857 Q15149;H0YDN1 Q15149 4610 4627 PLEC Plectin yes no 2 5.4528E-14 150.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1.0616 0.9861 10.781 7 Median 1.0369 1.014 NaN 1 0 Median 1.0692 0.8959 21.881 2 0 Median 0.9295 0.9861 NaN 1 0 Median 1.1247 0.97923 0.27474 2 2 Median 1.0616 1.0534 NaN 1 0 Median NaN NaN NaN 0 0 Median 37660000 17650000 20010000 12849000 6227000 6621800 9055500 4447900 4607600 7461600 3429000 4032600 4176700 1889200 2287400 4117500 1657200 2460200 0 0 0 12897 2933 13415 65646;65647;65648;65649;65650;65651;65652 65920;65921;65922;65923;65924;65925;65926;65927;65928;65929 65927 10 HAAENPGKYNILGTNTIMDK MIGLPGAGKTTWVTKHAAENPGKYNILGTN PGKYNILGTNTIMDKMMVAGFKKQMADTGK K H A D K M 2 0 3 1 0 0 1 2 1 2 1 2 1 0 1 0 2 0 1 0 0 0 20 1 2186.079 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 517 536 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3;4 9.1071E-38 193.47 By MS/MS By matching By MS/MS By MS/MS 5 3 10 3 0.87197 0.96472 19.051 21 Median 0.69683 0.73053 29.367 5 0 Median NaN NaN NaN 0 0 Median 0.91923 1.0618 12.102 3 0 Median NaN NaN NaN 0 0 Median 0.86576 0.95556 13.155 10 2 Median 1.1184 1.0096 0.276 3 0 Median 517400000 270500000 246900000 65584000 34997000 30587000 0 0 0 20565000 11284000 9280700 0 0 0 423440000 220470000 202970000 7808700 3754200 4054400 12898 2680 13416;13417 65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673 65930;65931;65932;65933;65934;65935;65936;65937;65938;65939;65940;65941;65942;65943;65944;65945;65946;65947;65948;65949;65950;65951 65944 1355 22 HAALQDIGK APVEHVVADAGAFLRHAALQDIGKNIYTIR AGAFLRHAALQDIGKNIYTIREVVTEIRDK R H A G K N 2 0 0 1 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 951.51378 H3BUR4;Q9ULX3 H3BUR4 17 25 NOB1 RNA-binding protein NOB1 yes no 2 0.0034822 64.803 By matching By MS/MS 1 1 0.86379 0.78154 12.882 2 Median 0.75644 0.7135 NaN 1 0 Median 0.98638 0.85607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1765300 803580 961680 373450 187260 186180 1391800 616320 775500 0 0 0 0 0 0 0 0 0 0 0 0 12899 1238 13418 65674;65675 65952;65953 65952 2 HAALSLSK DSRAILCRYNEESQKHAALSLSKEHNPTQY YNEESQKHAALSLSKEHNPTQYEERMRIQK K H A S K E 2 0 0 0 0 0 0 0 1 0 2 1 0 0 0 2 0 0 0 0 0 0 8 0 825.47085 Q9H0C8;F8SNU7;H7C2I8 Q9H0C8 251 258 ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2 0.012201 55.441 By MS/MS 1 1.1751 1.2182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1751 1.2182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 914540 448230 466310 0 0 0 0 0 0 914540 448230 466310 0 0 0 0 0 0 0 0 0 12900 3923 13419 65676 65954 65954 1 HAASTVQILGAEK ARLIAHAGSLLNLAKHAASTVQILGAEKAL AKHAASTVQILGAEKALFRALKSRRDTPKY K H A E K A 3 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 13 0 1323.7147 Q9Y2X3 Q9Y2X3 311 323 NOP58 Nucleolar protein 58 yes yes 2;3 1.2628E-80 260.22 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 8 4 1.3296 1.2483 21.158 20 Median 1.8051 1.7425 NaN 1 0 Median 1.9204 1.638 9.4036 2 1 Median 1.4435 1.4195 11.312 2 0 Median 1.6075 1.3699 9.0883 3 1 Median 1.039 1.0188 14.016 8 0 Median 1.3806 1.1277 15.655 4 0 Median 159930000 73199000 86731000 2202200 794790 1407400 8533100 2854100 5679000 17228000 6550100 10677000 6122300 2099900 4022400 92930000 44709000 48221000 32915000 16191000 16724000 12901 4396 13420 65677;65678;65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690;65691;65692;65693;65694;65695;65696 65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965;65966;65967;65968;65969;65970;65971;65972 65969 17 HAAVLVLR RALEWLGADRNEGRRHAAVLVLRELAISVP DRNEGRRHAAVLVLRELAISVPTFFFQQVQ R H A L R E 2 1 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 8 0 877.54977 P42345 P42345 166 173 MTOR Serine/threonine-protein kinase mTOR yes yes 2 0.0023286 113.08 By matching By MS/MS 1 2 1.1809 1.0082 12.529 3 Median 1.1809 1.1953 NaN 1 0 Median 1.1592 0.97151 5.2456 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9157500 3781300 5376100 1854000 741290 1112800 7303400 3040000 4263400 0 0 0 0 0 0 0 0 0 0 0 0 12902 2310 13421 65697;65698;65699 65973 65973 1 HADAEMTGYVVTR NEDCELKILDFGLARHADAEMTGYVVTRWY ARHADAEMTGYVVTRWYRAPEVILSWMHYN R H A T R W 2 1 0 1 0 0 1 1 1 0 0 0 1 0 0 0 2 0 1 2 0 0 13 0 1448.6718 O15264;Q5R3E6 O15264 174 186 MAPK13 Mitogen-activated protein kinase 13 yes no 3 0.0001029 74.987 By MS/MS By matching 1 1 0.89435 0.87756 4.9033 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83779 0.90852 NaN 1 0 Median 0.95473 0.84766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229100 1891700 2337300 0 0 0 0 0 0 3111200 1426900 1684300 1117800 464850 652980 0 0 0 0 0 0 12903 1535 13422 65700;65701 65974 65974 1 HADHSSLTLGSGSSTTR PSPGNIPTTHPLMVRHADHSSLTLGSGSST DHSSLTLGSGSSTTRLTQGIGRSQRTLRQL R H A T R L 1 1 0 1 0 0 0 2 2 0 2 0 0 0 0 5 3 0 0 0 0 0 17 0 1712.8078 Q7Z6Z7 Q7Z6Z7 2522 2538 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3;4 6.1873E-06 70.529 By MS/MS By MS/MS 3 3 1.177 1.0997 9.7477 6 Median 0.98744 1.0014 8.2027 3 0 Median 1.3134 1.1258 4.5527 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8950000 4004800 4945200 3840400 1826800 2013600 5109600 2178000 2931600 0 0 0 0 0 0 0 0 0 0 0 0 12904 3253 13423 65702;65703;65704;65705;65706;65707 65975;65976;65977;65978;65979;65980;65981 65978 7 HADIVTTTTHK ISGLVAAKVIPSPFKHADIVTTTTHKTLRG SPFKHADIVTTTTHKTLRGARSGLIFYRKG K H A H K T 1 0 0 1 0 0 0 0 2 1 0 1 0 0 0 0 4 0 0 1 0 0 11 0 1222.6306 P34897;H0YIZ0;G3V2Y4 P34897 270 280 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2;3 0.0013867 48.283 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1.2935 1.1437 19.534 9 Median 1.0907 1.0559 6.7109 2 0 Median 1.3419 1.1651 2.6226 2 0 Median 0.91746 0.93379 5.8941 2 0 Median 1.5504 1.338 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7043 1.4302 27.748 2 0 Median 8653300 3873000 4780200 1556000 823060 732970 4532900 1849400 2683400 1288500 730570 557880 1116900 411860 705050 0 0 0 159040 58138 100910 12905 2228 13424 65708;65709;65710;65711;65712;65713;65714;65715;65716 65982;65983;65984;65985;65986;65987;65988;65989 65987 8 HADVGVALLANAPER TLMCGDGTNDVGALKHADVGVALLANAPER HADVGVALLANAPERVVERRRRPRDSPTLS K H A E R V 4 1 1 1 0 0 1 1 1 0 2 0 0 0 1 0 0 0 0 2 0 0 15 0 1531.8107 Q9HD20 Q9HD20 874 888 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 3 9.0242E-05 53.403 By matching By matching By MS/MS 1 1 1 1.1566 1.1504 16.529 3 Median 1.1566 1.1504 NaN 1 0 Median 1.6619 1.403 NaN 1 0 Median 0.93963 1.0105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12061000 5455600 6605200 2426100 1061100 1365000 4582300 1644700 2937600 5052400 2749700 2302600 0 0 0 0 0 0 0 0 0 12906 4034 13425 65717;65718;65719 65990 65990 1 HADYIASYGSK VIIKSDAPDTLLLEKHADYIASYGSKKDDY LLEKHADYIASYGSKKDDYEYCMSEYLRMS K H A S K K 2 0 0 1 0 0 0 1 1 1 0 1 0 0 0 2 0 0 2 0 0 0 11 0 1210.5619 Q5T4U8;P53611 Q5T4U8 23 33 RABGGTB Geranylgeranyl transferase type-2 subunit beta yes no 2 0.00020101 74.533 By MS/MS 1 1.6392 1.3814 NaN 1 Median NaN NaN NaN 0 0 Median 1.6392 1.3814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1847200 749740 1097500 0 0 0 1847200 749740 1097500 0 0 0 0 0 0 0 0 0 0 0 0 12907 2471 13426 65720 65991 65991 1 HAEASAIVEYAYNDK EIIRSFKGHVRKMLRHAEASAIVEYAYNDK HAEASAIVEYAYNDKAILEQRNMLTEELYG R H A D K A 4 0 1 1 0 0 2 0 1 1 0 1 0 0 0 1 0 0 2 1 0 0 15 0 1679.7791 Q15397 Q15397 248 262 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 8.5563E-38 145.55 By MS/MS By matching 5 1 1.1429 1.0879 12.954 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1599 1.1041 9.4461 4 0 Median 1.0848 0.90616 NaN 1 0 Median 31294000 14696000 16598000 0 0 0 0 0 0 0 0 0 0 0 0 30771000 14474000 16297000 522440 221730 300710 12908 2947 13427 65721;65722;65723;65724;65725;65726 65992;65993;65994;65995 65994 4 HAEATLGSGNLR KKNIPEGSHQYELLKHAEATLGSGNLRMAV LLKHAEATLGSGNLRMAVMLPEGEDLNEWV K H A L R M 2 1 1 0 0 0 1 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1224.6211 Q7L9L4;Q9H8S9;D6RCK3 Q7L9L4 31 42 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 2;3 0.00015076 87.913 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1 1.1456 1.006 14.639 8 Median 0.97138 0.91627 NaN 1 0 Median 1.215 1.0325 18.43 3 0 Median 1.1813 1.1143 15.177 2 1 Median 1.0644 0.87573 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.247 1.0111 NaN 1 0 Median 10533000 5163800 5368800 2070000 1194000 876080 3033600 1363200 1670300 4382800 2109600 2273200 491950 235540 256410 0 0 0 554240 261400 292830 12909 3229 13428 65727;65728;65729;65730;65731;65732;65733;65734;65735 65996;65997;65998;65999;66000;66001;66002 66000 7 HAEKAPTNIVYK GNVEISQVTIVGIIRHAEKAPTNIVYKIDD IIRHAEKAPTNIVYKIDDMTAAPMDVRQWV R H A Y K I 2 0 1 0 0 0 1 0 1 1 0 2 0 0 1 0 1 0 1 1 0 0 12 1 1369.7354 Q5TEJ7;P15927 Q5TEJ7 86 97 RPA2 Replication protein A 32 kDa subunit yes no 3 0.0012498 44.922 By MS/MS By MS/MS 1 1 0.99474 0.92066 20.796 2 Median 0.81469 0.79476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2146 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6936700 3105100 3831600 3647300 1830900 1816400 0 0 0 0 0 0 3289500 1274200 2015200 0 0 0 0 0 0 12910 2022 13429 65736;65737 66003;66004;66005 66005 3 HAEMVHTGLK EYLKISKEIGGDVQKHAEMVHTGLKLERAL GDVQKHAEMVHTGLKLERALLVTASQCQQP K H A L K L 1 0 0 0 0 0 1 1 2 0 1 1 1 0 0 0 1 0 0 1 0 0 10 0 1121.5652 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 72 81 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2 0.011083 43.083 By MS/MS 1 1.237 1.0629 NaN 1 Median NaN NaN NaN 0 0 Median 1.237 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2045900 868380 1177500 0 0 0 2045900 868380 1177500 0 0 0 0 0 0 0 0 0 0 0 0 12911 2686 13430 65738 66006 66006 1 HAEMVHTGLKLER EYLKISKEIGGDVQKHAEMVHTGLKLERAL QKHAEMVHTGLKLERALLVTASQCQQPAEN K H A E R A 1 1 0 0 0 0 2 1 2 0 2 1 1 0 0 0 1 0 0 1 0 0 13 1 1519.7929 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 72 84 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 3 0.037855 29.689 By MS/MS 1 1.8669 1.8886 NaN 1 Median 1.8669 1.8886 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748200 570610 1177600 1748200 570610 1177600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12912 2686 13431 65739 66007 66007 1 HAEPEQNWEAVDGSQTETEKK ATDGKKRYDLSALVRHAEPEQNWEAVDGSQ NWEAVDGSQTETEKKHFFINICHRVLQEGK R H A K K H 2 0 1 1 0 2 5 1 1 0 0 2 0 0 1 1 2 1 0 1 0 0 21 1 2412.083 P11717 P11717 492 512 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3;4 7.4624E-18 102.67 By MS/MS 2 1.151 1.0979 10.739 2 Median NaN NaN NaN 0 0 Median 1.151 1.0979 10.739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16168000 7254000 8913600 0 0 0 16168000 7254000 8913600 0 0 0 0 0 0 0 0 0 0 0 0 12913 1969 13432 65740;65741 66008;66009;66010;66011 66009 4 HAEQERDELADEITNSASGK LQLQEELASSERARRHAEQERDELADEITN RDELADEITNSASGKSALLDEKRRLEARIA R H A G K S 3 1 1 2 0 1 4 1 1 1 1 1 0 0 0 2 1 0 0 0 0 0 20 1 2199.004 P35580 P35580 1705 1724 MYH10 Myosin-10 yes yes 3;4 2.169E-19 138.75 By MS/MS By MS/MS By matching 2 2 1 1.0278 1.0181 28.921 5 Median 0.99918 1.0004 4.5686 2 1 Median 1.1542 1.0871 9.2797 2 0 Median 0.46338 0.55573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77169000 36855000 40315000 50733000 24499000 26234000 21396000 9004700 12392000 5039700 3351200 1688500 0 0 0 0 0 0 0 0 0 12914 2245 13433 65742;65743;65744;65745;65746 66012;66013;66014;66015;66016;66017;66018 66016 7 HAEVVASIK DRLIEVNGQNVEGLRHAEVVASIKAREDEA NVEGLRHAEVVASIKAREDEARLLVVDPET R H A I K A 2 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 0 0 2 0 0 9 0 952.53418 Q15599;H3BUQ9;H3BN50;H3BQS0 Q15599 209 217 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 2 0.0071437 56.011 By matching By MS/MS By MS/MS By matching 1 3 4 1 1.117 1.032 17.328 9 Median 1.0343 1.0174 NaN 1 0 Median 1.2302 1.0545 22.714 3 1 Median 1.0631 1.1125 13.964 4 0 Median 1.0371 0.87277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5126200 2384100 2742100 697670 325850 371820 2484400 1140900 1343500 1560900 722420 838460 383290 194950 188340 0 0 0 0 0 0 12915 2958 13434 65747;65748;65749;65750;65751;65752;65753;65754;65755 66019;66020;66021;66022;66023 66022 5 HAEYSVILQEK SDEVIDLMIKEYPAKHAEYSVILQEKERQR YPAKHAEYSVILQEKERQRITDHYKEYSQM K H A E K E 1 0 0 0 0 1 2 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1315.6772 S5FZ81;Q8WUB8 S5FZ81 158 168 PHF10 PHD finger protein 10 yes no 2 2.5948E-08 138.4 By MS/MS 2 0.69598 0.69522 7.6255 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69598 0.69522 7.6255 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11341000 6496100 4845200 0 0 0 0 0 0 11341000 6496100 4845200 0 0 0 0 0 0 0 0 0 12916 3488 13435 65756;65757 66024;66025 66025 2 HAFEIFR TQSATPKCNIPPAPRHAFEIFRRFYLAKHS CNIPPAPRHAFEIFRRFYLAKHSGRQLTLQ R H A F R R 1 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 7 0 918.47119 Q13618;A0A087WTG3 Q13618 530 536 CUL3 Cullin-3 yes no 2 0.047302 41.502 By MS/MS 1 1.0647 0.92526 NaN 1 Median NaN NaN NaN 0 0 Median 1.0647 0.92526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098300 937040 1161200 0 0 0 2098300 937040 1161200 0 0 0 0 0 0 0 0 0 0 0 0 12917 2831 13436 65758 66026 66026 1 HAGPIVSVWHR QSVQTLSLWLIHHRKHAGPIVSVWHRELRK HHRKHAGPIVSVWHRELRKAKSNRKLTFLY K H A H R E 1 1 0 0 0 0 0 1 2 1 0 0 0 0 1 1 0 1 0 2 0 0 11 0 1257.6731 Q9NQG5;E9PIQ9;E9PQF3 Q9NQG5 36 46 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2;3 3.7275E-05 98.044 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 0.95062 0.83313 20.744 11 Median 0.76215 0.74438 20.228 2 0 Median 0.99707 0.83313 NaN 1 0 Median 0.98387 0.95744 27.908 2 0 Median 1.0606 0.89559 10.007 2 0 Median 0.70369 0.71412 41.959 2 0 Median 0.96267 0.78088 1.6451 2 0 Median 78338000 40152000 38185000 7164000 3820200 3343800 3606500 1523200 2083300 34236000 18937000 15298000 8549500 3840300 4709200 23111000 11248000 11864000 1670800 783820 887010 12918 4062 13437 65759;65760;65761;65762;65763;65764;65765;65766;65767;65768;65769 66027;66028;66029;66030;66031;66032;66033;66034 66031 8 HAHSVNF GQTFFSKKDKPLCKKHAHSVNF________ KDKPLCKKHAHSVNF_______________ K H A N F - 1 0 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 0 7 0 810.37729 Q96HC4;A0A0A0MSP3 Q96HC4 590 596 PDLIM5 PDZ and LIM domain protein 5 yes no 2 0.062118 47.403 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 636390 0 0 0 0 0 636390 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12919 3665 13438 65770 66035 66035 1 HAIPIIK NIELTRYTRPTPVQKHAIPIIKEKRDLMAC TRPTPVQKHAIPIIKEKRDLMACAQTGSGK K H A I K E 1 0 0 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 0 7 0 790.50651 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523;C9J8G5;C9J081;A0A2R8Y4D2 A0A2U3TZJ9 208 214 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0050629 103.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37425000 0 37425000 5282700 0 5282700 9472300 0 9472300 6071100 0 6071100 1540900 0 1540900 4799400 0 4799400 10259000 0 10259000 12920 263 13439 65771;65772;65773;65774;65775;65776;65777;65778;65779;65780 66036;66037;66038;66039;66040;66041;66042;66043;66044;66045;66046 66041 11 HAIPNLVK RNLAVDARNKELIGKHAIPNLVKNLPGGQQ NKELIGKHAIPNLVKNLPGGQQNSSWNFSE K H A V K N 1 0 1 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 890.53379 C9JZR2;O60716 C9JZR2 750 757 CTNND1 Catenin delta-1 yes no 2 0.0083716 63.148 By matching By MS/MS By MS/MS By matching By matching By matching 3 4 1 1 1 3 0.98409 0.86002 28.927 13 Median 0.98772 1.0004 22.343 3 0 Median 0.97841 1.2385 44.86 4 0 Linear 0.85442 0.90502 NaN 1 0 Median 0.98409 0.85579 NaN 1 0 Median 0.76639 0.78696 NaN 1 0 Median 1.2573 1.0688 29.309 3 0 Median 15822000 7460500 8361400 2706400 1398200 1308200 7000600 3074500 3926100 1881600 1006500 875090 912790 467390 445400 1304700 615300 689440 2015800 898540 1117200 12921 732 13440 65781;65782;65783;65784;65785;65786;65787;65788;65789;65790;65791;65792;65793 66047;66048;66049 66049 3 HAIVICNR VIWSADMSHVALLAKHAIVICNRKLDALCN HVALLAKHAIVICNRKLDALCNIHENIRVK K H A N R K 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 981.51782 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3 P53621 509 516 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.024981 43 By MS/MS 1 1.2248 1.0446 NaN 1 Median NaN NaN NaN 0 0 Median 1.2248 1.0446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3227700 1330700 1897000 0 0 0 3227700 1330700 1897000 0 0 0 0 0 0 0 0 0 0 0 0 12922 2473 13441 65794 66050 66050 1 HALESWR VVGRNKLLQCLHAKRHALESWRQLVEIILT LQCLHAKRHALESWRQLVEIILTACPQDLI R H A W R Q 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 7 0 897.4457 Q92621 Q92621 1281 1287 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.1511 1.1327 14.24 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92861 1.0242 NaN 1 0 Median 1.427 1.2527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6262600 2983900 3278700 0 0 0 0 0 0 4788600 2310100 2478500 1474000 673790 800230 0 0 0 0 0 0 12923 3547 13442 65795;65796 66051;66052;66053 66052 3 HALGQYVQAFR CVLNGHNAFVSGSFKHALGQYVQAFRTHPD GSFKHALGQYVQAFRTHPDEPLYSFCIGLT K H A F R T 2 1 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 0 1 1 0 0 11 0 1288.6677 Q9Y5Q9 Q9Y5Q9 751 761 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2;3 4.0693E-05 89.029 By MS/MS By matching By matching By matching 2 1 1 1 0.99956 0.93458 13.619 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86999 0.92534 19.829 2 0 Median 1.2156 1.0601 NaN 1 0 Median 0.76939 0.81422 NaN 1 0 Median 1.1039 0.93458 NaN 1 0 Median 42557000 21412000 21145000 0 0 0 0 0 0 16329000 8549100 7780300 308300 124630 183680 13016000 7092000 5924100 12903000 5646000 7257300 12924 4467 13443 65797;65798;65799;65800;65801 66054;66055;66056 66056 3 HALIIYDDLSK YSGCSMGEYFRDNGKHALIIYDDLSKQAVA DNGKHALIIYDDLSKQAVAYRQMSLLLRRP K H A S K Q 1 0 0 2 0 0 0 0 1 2 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1286.6871 P25705 P25705 306 316 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.00011205 123.86 By MS/MS By MS/MS 2 1 1.0455 0.9556 10.915 3 Median 0.98441 0.93221 3.504 2 0 Median 1.3274 1.1207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157540000 72249000 85291000 111020000 53389000 57631000 46520000 18860000 27661000 0 0 0 0 0 0 0 0 0 0 0 0 12925 2135 13444 65802;65803;65804 66057;66058;66059;66060;66061 66059 5 HALIVQGFSFLNR LTFIHMASQKYVLRRHALIVQGFSFLNRYL RRHALIVQGFSFLNRYLSLRGPCQESFYNL R H A N R Y 1 1 1 0 0 1 0 1 1 1 2 0 0 2 0 1 0 0 0 1 0 0 13 0 1500.8201 Q9Y5Q9 Q9Y5Q9 790 802 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 3 0.0023945 36.847 By MS/MS 1 1.0735 1.1469 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0735 1.1469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1999200 984580 1014700 0 0 0 0 0 0 1999200 984580 1014700 0 0 0 0 0 0 0 0 0 12926 4467 13445 65805 66062;66063 66063 2 HALLEADVAAHQDR DYGKDLTNVQNLQKKHALLEADVAAHQDRI KHALLEADVAAHQDRIDGITIQARQFQDAG K H A D R I 4 1 0 2 0 1 1 0 2 0 2 0 0 0 0 0 0 0 0 1 0 0 14 0 1544.7696 A0A0D9SF54;Q13813 Q13813 720 733 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 8.8247E-18 192.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 4 1 1 1.0418 0.96295 31.972 10 Median NaN NaN NaN 0 0 Median 1.2059 1.0245 13.448 3 0 Median 1.0454 1.1394 NaN 1 0 Median 1.1619 0.99912 47.92 4 0 Median 0.85894 0.90242 NaN 1 0 Median 0.9989 0.81336 NaN 1 0 Median 127920000 52711000 75209000 0 0 0 66955000 23616000 43338000 19514000 9301900 10212000 36411000 17378000 19033000 3434800 1677200 1757600 1605800 738200 867590 12927 264;2838 13446 65806;65807;65808;65809;65810;65811;65812;65813;65814;65815;65816 66064;66065;66066;66067;66068;66069;66070;66071;66072;66073;66074;66075;66076;66077;66078;66079;66080 66069 17 HALLEADVAAHQDRIDGITIQAR DYGKDLTNVQNLQKKHALLEADVAAHQDRI AAHQDRIDGITIQARQFQDAGHFDAENIKK K H A A R Q 5 2 0 3 0 2 1 1 2 3 2 0 0 0 0 0 1 0 0 1 0 0 23 1 2512.3146 A0A0D9SF54;Q13813 Q13813 720 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 5.1041E-05 35.421 By MS/MS 2 0.79028 0.97955 25.641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79028 0.97955 25.641 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12269000 6658300 5611100 0 0 0 0 0 0 12269000 6658300 5611100 0 0 0 0 0 0 0 0 0 12928 264;2838 13447 65817;65818 66081;66082 66081 2 HALMVFR GFLNRALRTDLVSPKHALMVFRVAKVFAQP RTDLVSPKHALMVFRVAKVFAQPNLAEMIQ K H A F R V 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 872.46908 Q9NXE4;H7C1Q6;H7C0W5;H7C2J2;H7C235;H7C2E2 Q9NXE4 501 507 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.025249 54.525 By MS/MS 2 1.2119 1.2819 4.1239 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2119 1.2819 4.1239 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8847900 4352100 4495800 0 0 0 0 0 0 8847900 4352100 4495800 0 0 0 0 0 0 0 0 0 12929 4162 13448 65819;65820 66083;66084 66083 2 HALPPGFVLK WFWVCPGGGDICMYRHALPPGFVLKKDKKK ICMYRHALPPGFVLKKDKKKEEKEDEISLE R H A L K K 1 0 0 0 0 0 0 1 1 0 2 1 0 1 2 0 0 0 0 1 0 0 10 0 1077.6335 Q8WU90 Q8WU90 209 218 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 2 0.00037241 94.262 By MS/MS 1 0.61265 0.52533 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61265 0.52533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8720700 5133700 3587000 0 0 0 0 0 0 0 0 0 8720700 5133700 3587000 0 0 0 0 0 0 12930 3485 13449 65821 66085;66086;66087;66088 66085 4 HALYSHSAEVQVR NLVYYIQTVREGRQKHALYSHSAEVQVRLQ QKHALYSHSAEVQVRLQFLTCVFSTLGSPD K H A V R L 2 1 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 1 2 0 0 13 0 1495.7532 Q70CQ2 Q70CQ2 975 987 USP34 Ubiquitin carboxyl-terminal hydrolase 34 yes yes 3 0.029677 20.106 By MS/MS By matching 2 1 1.3324 1.2853 14.142 3 Plateau 1.0986 1.0811 13.911 2 0 Median 1.3369 1.2891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7557700 3186600 4371100 3498400 1796400 1702000 4059400 1390300 2669100 0 0 0 0 0 0 0 0 0 0 0 0 12931 3207 13450 65822;65823;65824 66089 66089 1 HAMAVYER YLLYAQLEEEWGLARHAMAVYERATRAVEP EEWGLARHAMAVYERATRAVEPAQQYDMFN R H A E R A 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 8 0 975.45964 Q9HCS7 Q9HCS7 611 618 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.031031 38.792 By MS/MS By matching By matching By matching 1 1 1 1 1.1655 1.0197 25.599 4 Median NaN NaN NaN 0 0 Median 1.0916 0.98727 NaN 1 0 Median 0.78925 0.82814 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.445 1.5221 NaN 1 0 Median 1.2444 1.0531 NaN 1 0 Median 1952700 954800 997910 0 0 0 947310 464610 482700 414430 251300 163140 0 0 0 423680 166360 257320 167280 72535 94746 12932 4032 13451 65825;65826;65827;65828 66090;66091 66091 2 HAPFFPELPVADQVALLR ELAARLLFSTVEWARHAPFFPELPVADQVA FFPELPVADQVALLRLSWSELFVLNAAQAA R H A L R L 3 1 0 1 0 1 1 0 1 0 3 0 0 2 3 0 0 0 0 2 0 0 18 0 2019.0942 P10588;M0R175 P10588 219 236 NR2F6 Nuclear receptor subfamily 2 group F member 6 yes no 3 0.00070413 32.688 By MS/MS 1 0.5729 0.62192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5729 0.62192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1997100 1169800 827310 0 0 0 0 0 0 1997100 1169800 827310 0 0 0 0 0 0 0 0 0 12933 1940 13452 65829 66092;66093 66092 2 HAPLADQILAGNAVR MPKFKAARGVGGQEKHAPLADQILAGNAVR HAPLADQILAGNAVRAGVREKRRGRGTGEA K H A V R A 4 1 1 1 0 1 0 1 1 1 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1544.8423 Q13895;F8WBL2 Q13895 16 30 BYSL Bystin yes no 2;3 2.9376E-09 116.23 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.97421 0.87776 25.793 5 Median NaN NaN NaN 0 0 Median 1.0635 0.92783 NaN 1 0 Median 0.51033 0.53595 NaN 1 0 Median 0.97421 0.84325 NaN 1 0 Median 0.96366 0.9638 13.224 2 0 Median NaN NaN NaN 0 0 Median 30241000 14740000 15501000 0 0 0 805450 409390 396060 4558100 2334200 2223900 5723400 2977200 2746200 19154000 9019200 10135000 0 0 0 12934 2845 13453 65830;65831;65832;65833;65834 66094;66095;66096;66097;66098 66095 5 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK KTLYSFFSPSPARKRHAPSPEPAVQGTGVA GVPEESGDAAAIPAKKAPAGQEEPGTPPSS R H A A K K 7 0 0 1 0 1 3 4 1 1 0 1 0 0 5 2 1 0 0 3 0 0 30 0 2809.3883 P13051 P13051 20 49 UNG Uracil-DNA glycosylase yes yes 3 3.1365E-06 41.432 By MS/MS By MS/MS 1 1 0.36971 0.33352 8.0424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36742 0.35303 NaN 1 1 Median 0.37201 0.31508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10208000 7766600 2441700 0 0 0 0 0 0 6990500 5519600 1470900 3217700 2247000 970710 0 0 0 0 0 0 12935 1987 13454 65835;65836 66099;66100 66099 2 HAQANGFSVVR KPGVRYRELGNIIQKHAQANGFSVVRSYCG IIQKHAQANGFSVVRSYCGHGIHKLFHTAP K H A V R S 2 1 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1184.6051 P53582;H0Y955 P53582 279 289 METAP1 Methionine aminopeptidase 1 yes no 2 0.0020665 55.549 By matching By MS/MS 1 2 0.94312 0.87004 2.7926 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80311 0.87004 NaN 1 0 Median 0.95466 0.83628 2.2713 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6060000 3239100 2820900 0 0 0 0 0 0 3548800 1928300 1620500 2511200 1310800 1200400 0 0 0 0 0 0 12936 2468 13455 65837;65838;65839 66101;66102 66101 2 HAQPPPIPVQNDPELYEK KGDNVPQVNGENTERHAQPPPIPVQNDPEL PPPIPVQNDPELYEKLTSSNEINKEKSDTV R H A E K L 1 0 1 1 0 2 2 0 1 1 1 1 0 0 5 0 0 0 1 1 0 0 18 0 2071.0375 A0A0A0MT33;Q9UPN6 A0A0A0MT33 1300 1317 SCAF8 Protein SCAF8 yes no 3 1.4595E-06 69.737 By MS/MS 1 0.40753 0.43537 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40753 0.43537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11351000 8442900 2908100 0 0 0 0 0 0 11351000 8442900 2908100 0 0 0 0 0 0 0 0 0 12937 186 13456 65840 66103;66104 66103 2 HASGGSTVHIHPQAAPVVCR IFQIQRSGGRKHTEKHASGGSTVHIHPQAA STVHIHPQAAPVVCRHVLDTLIQLAKVFPS K H A C R H 3 1 0 0 1 1 0 2 3 1 0 0 0 0 2 2 1 0 0 3 0 0 20 0 2080.0385 Q7Z6Z7;H0Y659 Q7Z6Z7 3315 3334 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 3;4 3.2236E-19 125.61 By MS/MS 4 0.93998 0.79125 6.8595 3 Median NaN NaN NaN 0 0 Median 0.93998 0.79125 6.8595 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21915000 10611000 11304000 0 0 0 21915000 10611000 11304000 0 0 0 0 0 0 0 0 0 0 0 0 12938 3253 13457 65841;65842;65843;65844 66105;66106;66107;66108;66109;66110;66111;66112 66106 8 HASNMLGELR MKRCLDKNKLMDALKHASNMLGELRTSMLS MDALKHASNMLGELRTSMLSPKSYYELYMA K H A L R T 1 1 1 0 0 0 1 1 1 0 2 0 1 0 0 1 0 0 0 0 0 0 10 0 1126.5553 Q96QK1 Q96QK1 45 54 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.00037374 105.52 By MS/MS By MS/MS 1 1 1.178 1.0653 8.5625 2 Median 1.1961 1.1318 NaN 1 0 Median 1.1601 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19821000 9241100 10580000 9493000 4512900 4980200 10328000 4728300 5599500 0 0 0 0 0 0 0 0 0 0 0 0 12939 3722 13458 65845;65846 66113;66114;66115 66113 3 HASPILPITEFSDIPR SNESLVVNRVTGNFKHASPILPITEFSDIP ASPILPITEFSDIPRRAPKKPLTRAEVGEK K H A P R R 1 1 0 1 0 0 1 0 1 3 1 0 0 1 3 2 1 0 0 0 0 0 16 0 1791.9519 P42167;G5E972;H0YJH7 P42167 304 319 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2;3 8.3351E-20 186.58 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 7 2 0.60407 0.58545 32.741 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53151 0.52049 36.714 5 1 Median 0.84389 0.72597 16.399 2 0 Median 0.57636 0.61155 27.488 7 0 Median 0.7806 0.6491 19.217 2 0 Median 311090000 193560000 117530000 0 0 0 0 0 0 205770000 131320000 74447000 5258200 2799600 2458600 88489000 53161000 35328000 11579000 6280300 5299100 12940 2307 13459 65847;65848;65849;65850;65851;65852;65853;65854;65855;65856;65857;65858;65859;65860;65861;65862 66116;66117;66118;66119;66120;66121;66122;66123;66124;66125;66126;66127;66128;66129;66130;66131;66132;66133 66120 18 HATAEEVEEEER KPKRNEIDAEPPAKRHATAEEVEEEERDRI AKRHATAEEVEEEERDRIPGPVCKGKWKNK R H A E R D 2 1 0 0 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1427.6165 Q8TDN6 Q8TDN6 33 44 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 0.00062172 66.435 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 5 4 1.1855 1.1092 17.175 15 Median NaN NaN NaN 0 0 Median 1.3226 1.1883 1.2148 3 1 Plateau 1.1383 1.1696 7.5037 2 0 Median 1.3621 1.1737 NaN 1 0 Median 0.89942 0.90362 19.656 5 0 Median 1.2438 1.0429 13.867 4 0 Median 11815000 5694500 6120700 0 0 0 1746700 812600 934070 1246200 647600 598620 499770 248760 251010 5646700 2818800 2828000 2675800 1166800 1509000 12941 3473 13460 65863;65864;65865;65866;65867;65868;65869;65870;65871;65872;65873;65874;65875;65876;65877 66134;66135;66136;66137;66138;66139;66140;66141;66142 66140 8 HATAEEVEEEERDR KPKRNEIDAEPPAKRHATAEEVEEEERDRI RHATAEEVEEEERDRIPGPVCKGKWKNKER R H A D R I 2 2 0 1 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 14 1 1698.7445 Q8TDN6 Q8TDN6 33 46 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 0.001302 38.3 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 3 1.0083 0.96749 28.269 7 Median NaN NaN NaN 0 0 Median 1.0083 0.94165 NaN 1 0 Median 0.94396 0.96749 NaN 1 0 Median 0.59952 0.52775 NaN 1 0 Median 1.0588 1.19 NaN 1 0 Median 1.1554 1.0191 23.746 3 0 Median 10015000 5258700 4756100 0 0 0 3117200 1661000 1456200 3131200 1642300 1488800 1086600 618520 468060 429500 197700 231810 2250400 1139200 1111200 12942 3473 13461 65878;65879;65880;65881;65882;65883;65884 66143;66144;66145;66146 66144 4 HATALEELSEQLEQAK ETKNHEAQIQDMRQRHATALEELSEQLEQA ATALEELSEQLEQAKRFKANLEKNKQGLET R H A A K R 3 0 0 0 0 2 4 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 16 0 1795.8952 P35580 P35580 1201 1216 MYH10 Myosin-10 yes yes 2;3 3.8216E-59 234.41 By MS/MS By MS/MS 2 1 1.2406 1.0987 58.186 3 Median NaN NaN NaN 0 0 Median 1.2558 1.1126 1.7735 2 0 Median 0.3659 0.4062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27957000 12383000 15574000 0 0 0 26329000 11269000 15060000 1628200 1114400 513770 0 0 0 0 0 0 0 0 0 12943 2245 13462 65885;65886;65887 66147;66148;66149 66149 3 HATALEELSEQLEQAKR ETKNHEAQIQDMRQRHATALEELSEQLEQA TALEELSEQLEQAKRFKANLEKNKQGLETD R H A K R F 3 1 0 0 0 2 4 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 17 1 1951.9963 P35580 P35580 1201 1217 MYH10 Myosin-10 yes yes 3 5.3068E-06 68.257 By matching By MS/MS By MS/MS 1 1 1 0.8529 0.85231 20.371 3 Median 0.8529 0.85231 NaN 1 0 Median 1.1933 1.1283 NaN 1 0 Median 0.63323 0.75925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40481000 23918000 16563000 28235000 17461000 10774000 4922900 2044600 2878400 7323400 4412200 2911300 0 0 0 0 0 0 0 0 0 12944 2245 13463 65888;65889;65890 66150;66151;66152 66150 3 HATIYPTEEELQAVQK LRRPDSSDDRYVMTKHATIYPTEEELQAVQ ATIYPTEEELQAVQKIVSITERALKLVSDS K H A Q K I 2 0 0 0 0 2 3 0 1 1 1 1 0 0 1 0 2 0 1 1 0 0 16 0 1855.9316 Q96KR1;H0Y8W1 Q96KR1 731 746 ZFR Zinc finger RNA-binding protein yes no 2;3 3.3112E-11 129.89 By MS/MS By MS/MS By MS/MS By matching 3 1 4 1 1.0207 0.96128 15.079 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90753 0.96505 23.907 3 0 Median 1.1196 0.95599 NaN 1 0 Median 0.97602 1.0136 9.391 4 0 Median 1.0448 0.86841 NaN 1 0 Median 110090000 55963000 54128000 0 0 0 0 0 0 76323000 38459000 37865000 2519100 1335500 1183600 30260000 15632000 14627000 989050 536450 452600 12945 3697 13464 65891;65892;65893;65894;65895;65896;65897;65898;65899 66153;66154;66155;66156;66157;66158;66159;66160;66161;66162;66163 66156 11 HAVSDPSILDSLDLNEDER DKYKRPGYGAYDAFKHAVSDPSILDSLDLN DPSILDSLDLNEDEREVLINNINRRLTPQA K H A E R E 1 1 1 4 0 0 2 0 1 1 3 0 0 0 1 3 0 0 0 1 0 0 19 0 2123.9971 P05198;G3V4T5;H0YJS4 P05198 155 173 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 3 1.1891E-08 82.007 By MS/MS By matching 1 1 1.0084 0.92022 11.123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0068 0.99552 NaN 1 0 Median 1.01 0.85062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4035800 2147600 1888100 0 0 0 0 0 0 3909600 2081900 1827700 126160 65698 60463 0 0 0 0 0 0 12946 1862 13465 65900;65901 66164;66165 66165 2 HAVSDPSILDSLDLNEDEREVLINNINR DKYKRPGYGAYDAFKHAVSDPSILDSLDLN LNEDEREVLINNINRRLTPQAVKIRADIEV K H A N R R 1 2 4 4 0 0 3 0 1 3 4 0 0 0 1 3 0 0 0 2 0 0 28 1 3189.5902 P05198;G3V4T5;H0YJS4 P05198 155 182 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 4 0.012922 17.216 By MS/MS 1 1.0321 1.0772 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0321 1.0772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1350800 540470 810290 0 0 0 0 0 0 1350800 540470 810290 0 0 0 0 0 0 0 0 0 12947 1862 13466 65902 66166 66166 1 HAVSEGTKAVTKYTSSK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS VSEGTKAVTKYTSSKKRKRRFTESIKKAHG K H A S K K 2 0 0 0 0 0 1 1 1 0 0 3 0 0 0 3 3 0 1 2 0 0 17 2 1792.9319 Q16778;P33778;P23527;Q8N257;Q96A08;A0A2R8Y619;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876 U3KQK0 110 126 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D no no 3;4 0.0085952 24.41 By MS/MS By matching 5 2 0.91196 1.0307 12.765 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88575 1.001 13.279 5 0 Median 1.3315 1.084 6.7691 2 0 Median 10100000 5099700 5000500 0 0 0 0 0 0 0 0 0 0 0 0 7992300 4200500 3791800 2107900 899200 1208700 12948 2117;2521 13467 65903;65904;65905;65906;65907;65908;65909 66167;66168 66168 2 HAVVNLINYQDDAELATR PTNVQRLAEPSQMLKHAVVNLINYQDDAEL VNLINYQDDAELATRAIPELTKLLNDEDQV K H A T R A 3 1 2 2 0 1 1 0 1 1 2 0 0 0 0 0 1 0 1 2 0 0 18 0 2041.0229 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0 A0A2R8Y804 134 151 CTNNB1 Catenin beta-1 yes no 3 1.8415E-11 99.569 By MS/MS By matching By MS/MS 1 1 1 0.80061 0.76446 21.579 3 Median 0.80061 0.76446 NaN 1 0 Median 1.0191 0.92619 NaN 1 0 Median 0.56411 0.60205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11516000 6540200 4975500 5566800 3042100 2524700 797660 359620 438040 5151300 3138500 2012800 0 0 0 0 0 0 0 0 0 12949 368 13468 65910;65911;65912 66169;66170;66171 66170 3 HAYDLIQK PVTTVSLCFLTQNYRHAYDLIQKFGDLEVT FLTQNYRHAYDLIQKFGDLEVTVDFLAEVD R H A Q K F 1 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 986.51853 Q08AM6;H3BQD9 Q08AM6 644 651 VAC14 Protein VAC14 homolog yes no 2 0.011113 57.559 By matching By MS/MS 1 1 1.0445 0.99173 18.803 2 Median 0.85905 0.86826 NaN 1 0 Median 1.27 1.1328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2359700 1033700 1326000 1110300 508220 602080 1249400 525500 723930 0 0 0 0 0 0 0 0 0 0 0 0 12950 2744 13469 65913;65914 66172 66172 1 HAYGDQYR PRLVSGWVKPIIIGRHAYGDQYRATDFVVP KPIIIGRHAYGDQYRATDFVVPGPGKVEIT R H A Y R A 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 0 8 0 1008.4413 O75874;C9J4N6 O75874 133 140 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes no 2 0.064877 47.067 By MS/MS 1 1.3315 1.1749 NaN 1 Median NaN NaN NaN 0 0 Median 1.3315 1.1749 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 571420 246010 325410 0 0 0 571420 246010 325410 0 0 0 0 0 0 0 0 0 0 0 0 12951 1701 13470 65915 66173 66173 1 HAYGLGEHYNSVTR GEEYSKKPLILVYMRHAYGLGEHYNSVTRL RHAYGLGEHYNSVTRLVNIVTENCS_____ R H A T R L 1 1 1 0 0 0 1 2 2 0 1 0 0 0 0 1 1 0 2 1 0 0 14 0 1602.7539 A0A087X0W9;Q8N6M0 A0A087X0W9 300 313 OTUD6B OTU domain-containing protein 6B yes no 3 3.6906E-05 80.96 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.99453 0.8351 14.298 4 Median 1.1069 1.0458 NaN 1 0 Median 1.0727 0.89296 NaN 1 0 Median 0.81596 0.78099 NaN 1 0 Median 0.9221 0.76898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14872000 7153200 7718700 5217000 2302200 2914800 5997600 3103100 2894500 1203200 721410 481790 2454100 1026500 1427600 0 0 0 0 0 0 12952 115 13471 65916;65917;65918;65919 66174;66175;66176;66177;66178 66177 5 HAYSWDINR SSNISKWELDDSSEKHAYSWDINRALKENI DDSSEKHAYSWDINRALKENITDAIWGSES K H A N R A 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 1 0 0 0 9 0 1160.5363 Q8WUM0 Q8WUM0 306 314 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00053478 116.73 By MS/MS 1 1.3353 1.4684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3353 1.4684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9604200 3867100 5737000 0 0 0 0 0 0 9604200 3867100 5737000 0 0 0 0 0 0 0 0 0 12953 3492 13472 65920 66179 66179 1 HCDEVGFNAEEAHNIVK ______________________________ DEVGFNAEEAHNIVKECVDGVLGGEDYNHN R H C V K E 2 0 2 1 1 0 3 1 2 1 0 1 0 1 0 0 0 0 0 2 0 0 17 0 1967.8796 A6NGJ0;P51808 A6NGJ0 7 23 DYNLT3 Dynein light chain Tctex-type 3 yes no 3 5.8218E-06 65.231 By MS/MS By matching 1 1 1.3385 1.2494 8.73 2 Median NaN NaN NaN 0 0 Median 1.5148 1.3289 NaN 1 0 Median 1.1827 1.1746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9617600 3932100 5685500 0 0 0 7415700 2807900 4607900 2201800 1124200 1077600 0 0 0 0 0 0 0 0 0 12954 513 13473 65921;65922 66180 66180 1 HCNMVLENVK RNNKKLLGRVKAFDRHCNMVLENVKEMWTE KAFDRHCNMVLENVKEMWTEVPKSGKGKKK R H C V K E 0 0 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1242.5849 P62316 P62316 62 71 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2;3 0.0005372 114.5 By MS/MS By MS/MS 2 2 1.1365 1.0114 8.0835 4 Median NaN NaN NaN 0 0 Median 1.3189 1.0906 7.7167 2 1 Median 1.0116 0.97303 2.5378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39256000 18745000 20511000 0 0 0 15965000 6950900 9014300 23291000 11794000 11497000 0 0 0 0 0 0 0 0 0 12955 2586 13474 65923;65924;65925;65926 66181;66182;66183;66184;66185;66186 66181 6 HCNMVLENVKEMWTEVPK RNNKKLLGRVKAFDRHCNMVLENVKEMWTE MVLENVKEMWTEVPKSGKGKKKSKPVNKDR R H C P K S 0 0 2 0 1 0 3 0 1 0 1 2 2 0 1 0 1 1 0 3 0 0 18 1 2243.0537 P62316 P62316 62 79 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 3 1.1555E-05 50.079 By MS/MS 1 0.82021 0.83088 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82021 0.83088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9677100 5448300 4228800 0 0 0 0 0 0 9677100 5448300 4228800 0 0 0 0 0 0 0 0 0 12956 2586 13475 65927 66187;66188 66187 1253 2 HDADGQATLLNLLLR VRSFLHARLRTATLRHDADGQATLLNLLLR HDADGQATLLNLLLRNYLHYSLYDQAEKLV R H D L R N 2 1 1 2 0 1 0 1 1 0 5 0 0 0 0 0 1 0 0 0 0 0 15 0 1648.8897 O43242 O43242 242 256 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 4.5279E-06 87.363 By MS/MS By MS/MS By MS/MS 3 4 1 1.1233 0.97703 16.344 8 Median 1.1572 1.1339 13.636 3 0 Plateau 1.1399 0.96895 12.736 4 0 Median 1.3405 1.3361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52815000 23452000 29363000 7734300 3717100 4017200 29347000 12781000 16565000 15734000 6953600 8780000 0 0 0 0 0 0 0 0 0 12957 1560 13476 65928;65929;65930;65931;65932;65933;65934;65935 66189;66190;66191;66192;66193;66194;66195;66196;66197;66198;66199 66196 11 HDDYFQER ESSRRHRDLLHNEDRHDDYFQERNREHERH LLHNEDRHDDYFQERNREHERHRDRERDRH R H D E R N 0 1 0 2 0 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 8 0 1108.4574 Q8N684 Q8N684 448 455 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 0.012659 54.549 By MS/MS By MS/MS 1 1 1.022 0.97616 2.7577 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90755 0.95731 NaN 1 0 Median 1.1509 0.99538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2393400 1157200 1236200 0 0 0 0 0 0 1489300 738940 750330 904100 418240 485860 0 0 0 0 0 0 12958 3385 13477 65936;65937 66200;66201;66202;66203 66203 4 HDDYLVMLK KAGVMALANLLQIQRHDDYLVMLKAIRILV LLQIQRHDDYLVMLKAIRILVQERLTQDAV R H D L K A 0 0 0 2 0 0 0 0 1 0 2 1 1 0 0 0 0 0 1 1 0 0 9 0 1132.5587 Q9Y224;H0YJB9;G3V4C6 Q9Y224 146 154 C14orf166 UPF0568 protein C14orf166 yes no 2 0.00064234 107.59 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.2616 1.1021 20.257 8 Median 0.95598 0.88628 23.074 2 0 Median NaN NaN NaN 0 0 Median 1.2058 1.1316 3.2524 2 0 Median 1.3078 1.0836 1.9268 2 0 Median 1.5475 1.5833 NaN 1 0 Median 1.4122 1.1772 NaN 1 0 Median 96885000 45677000 51208000 45050000 22720000 22330000 0 0 0 37349000 16552000 20797000 8771100 3758200 5012900 2659400 1313500 1346000 3055200 1333000 1722200 12959 4367 13478;13479 65938;65939;65940;65941;65942;65943;65944;65945 66204;66205;66206;66207;66208;66209;66210;66211;66212;66213 66205 1946 10 HDEASSLSHPDLTSVIHLTR ELKAKGLSLGFLEKKHDEASSLSHPDLTSV SLSHPDLTSVIHLTRSVQLWPAMEYLAMLW K H D T R S 1 1 0 2 0 0 1 0 3 1 3 0 0 0 1 4 2 0 0 1 0 0 20 0 2214.1029 Q9NU22 Q9NU22 2907 2926 MDN1 Midasin yes yes 4 7.6311E-09 71.742 By MS/MS 1 0.81398 0.8665 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81398 0.8665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6764300 3543600 3220700 0 0 0 0 0 0 6764300 3543600 3220700 0 0 0 0 0 0 0 0 0 12960 4112 13480 65946 66214;66215 66215 2 HDELLAEHIK DDQFTTSILRHWCMKHDELLAEHIKSLLIK HWCMKHDELLAEHIKSLLIKNNSLPRKRQS K H D I K S 1 0 0 1 0 0 2 0 2 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1203.6248 Q68E01 Q68E01 884 893 INTS3 Integrator complex subunit 3 yes yes 3 0.0029024 56.359 By MS/MS By MS/MS 1 1 1.7849 1.6725 10.707 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.722 1.8041 NaN 1 1 Median 1.85 1.5506 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2645900 872190 1773700 0 0 0 0 0 0 1541300 500670 1040700 1104600 371520 733050 0 0 0 0 0 0 12961 3126 13481 65947;65948 66216;66217;66218 66217 3 HDELTYF NKPLTLSNYQTNKAKHDELTYF________ NYQTNKAKHDELTYF_______________ K H D Y F - 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 923.4025 P04080;A0A1W2PQG6 P04080 92 98 CSTB Cystatin-B yes no 2 0.060314 48.242 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3028000 0 0 0 0 0 0 0 0 3028000 0 0 0 0 0 0 0 0 0 0 0 12962 1843 13482 65949 66219 66219 1 HDGAFLIR KIPRAKAEEMLSKQRHDGAFLIRESESAPG EMLSKQRHDGAFLIRESESAPGDFSLSVKF R H D I R E 1 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 927.49265 P62993;J3KT38;J3QRL5 P62993 79 86 GRB2 Growth factor receptor-bound protein 2 yes no 2 0.0057212 89.142 By MS/MS By MS/MS 1 1 1.1937 1.1472 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1937 1.1472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7878300 3213900 4664400 0 0 0 0 0 0 7878300 3213900 4664400 0 0 0 0 0 0 0 0 0 12963 2613 13483 65950;65951 66220;66221;66222 66222 3 HDGKLWNLNNYR YQVLKQNPFWWTHQRHDGKLWNLNNYRTDM HQRHDGKLWNLNNYRTDMIQALGGVEGILE R H D Y R T 0 1 3 1 0 0 0 1 1 0 2 1 0 0 0 0 0 1 1 0 0 0 12 1 1528.7535 Q6P2Q9;I3L3Z8 Q6P2Q9 1460 1471 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.0011264 45.911 By MS/MS By matching 1 1 0.96775 1.127 1.9775 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.927 1.1114 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0103 1.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median 11899000 5869900 6029500 0 0 0 0 0 0 8502400 4300600 4201800 0 0 0 3397000 1569300 1827700 0 0 0 12964 3157 13484 65952;65953 66223;66224 66224 2 HDGYGSHGPLLPLPSR RQRQAILGEHPSSFRHDGYGSHGPLLPLPS DGYGSHGPLLPLPSRYRMGSRDTPELVAYP R H D S R Y 0 1 0 1 0 0 0 3 2 0 3 0 0 0 3 2 0 0 1 0 0 0 16 0 1701.8587 B7WPG3;C9IYN3;D6W592;Q8WVV9 B7WPG3 254 269 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.021455 28.956 By MS/MS 1 0.64717 0.54029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64717 0.54029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1851000 1146200 704810 0 0 0 0 0 0 0 0 0 1851000 1146200 704810 0 0 0 0 0 0 12965 629 13485 65954 66225 66225 1 HDIAFVEFDNEVQAGAAR NQFPGFKEVRLVPGRHDIAFVEFDNEVQAG AFVEFDNEVQAGAARDALQGFKITQNNAMK R H D A R D 4 1 1 2 0 1 2 1 1 1 0 0 0 2 0 0 0 0 0 2 0 0 18 0 1987.9388 P09012;M0R268 P09012 244 261 SNRPA U1 small nuclear ribonucleoprotein A yes no 2;3 5.5782E-13 132.84 By MS/MS By matching By matching 3 1 1 1.183 1.0429 9.8805 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1417 1.1288 13.452 3 0 Median 1.2246 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.183 1.0429 NaN 1 0 Median 34209000 16794000 17415000 0 0 0 0 0 0 33925000 16655000 17270000 131380 68053 63324 0 0 0 152540 70960 81581 12966 1910 13486 65955;65956;65957;65958;65959 66226;66227;66228;66229;66230;66231;66232 66228 7 HDIAFVEFENDGQAGAAR NQFPGFKEVRLVPGRHDIAFVEFENDGQAG AFVEFENDGQAGAARDALQGFKITPSHAMK R H D A R D 4 1 1 2 0 1 2 2 1 1 0 0 0 2 0 0 0 0 0 1 0 0 18 0 1945.8919 P08579 P08579 187 204 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 3 0.027207 14.472 By MS/MS By matching By matching 2 1 1 1.2879 1.0593 14.429 4 Median NaN NaN NaN 0 0 Median 1.0909 0.95286 22.001 2 0 Median NaN NaN NaN 0 0 Median 1.3423 1.1 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2677 1.0201 NaN 1 0 Median 7509800 3469800 4040000 0 0 0 1302800 569070 733690 0 0 0 360710 78433 282280 0 0 0 5846300 2822300 3024000 12967 1904 13487 65960;65961;65962;65963 66233 66233 1 HDLDLICR SFTFGAEVVAKFLHKHDLDLICRAHQVVED VAKFLHKHDLDLICRAHQVVEDGYEFFAKR K H D C R A 0 1 0 2 1 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1040.5073 P62140;P62136;E9PMD7;F8VYE8;P36873;F8VR82;F8W0W8 P62136 239 246 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.0057147 84.568 By MS/MS By MS/MS 1 2 1.0905 1.0764 8.8483 3 Median NaN NaN NaN 0 0 Median 1.1517 0.95788 NaN 1 1 Median 1.0447 1.1075 4.0247 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16793000 7705300 9087700 0 0 0 8704300 4000900 4703400 8088700 3704400 4384300 0 0 0 0 0 0 0 0 0 12968 2569;1074;2570 13488 65964;65965;65966 66234;66235 66235 2 HDLNPLIK NKEVPCYVFDEELRKHDLNPLIKLSGAYLV FDEELRKHDLNPLIKLSGAYLVDDSDPDTS K H D I K L 0 0 1 1 0 0 0 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 948.53927 P11717 P11717 184 191 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.013524 52.867 By matching By MS/MS 1 2 1.3654 1.2075 17.876 3 Plateau 0.93395 0.95584 NaN 1 0 Median 1.0773 1.0131 24.831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15483000 6925100 8557800 2412500 1220500 1192000 13070000 5704600 7365900 0 0 0 0 0 0 0 0 0 0 0 0 12969 1969 13489 65967;65968;65969 66236 66236 1 HDPNMKYELQLANPK VPAQSSWNYNFMGVRHDPNMKYELQLANPK HDPNMKYELQLANPKEFYHEVHRPSHFLNF R H D P K E 1 0 2 1 0 1 1 0 1 0 2 2 1 0 2 0 0 0 1 0 0 0 15 1 1796.888 Q6P2Q9 Q6P2Q9 2288 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 4.9441E-05 74.769 By MS/MS By MS/MS By MS/MS 2 1 3 1.1139 1.1433 66.344 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64529 0.74788 12.18 2 1 Median 0.87509 0.82275 NaN 1 0 Median 3.7854 4.0387 53.865 3 0 Plateau NaN NaN NaN 0 0 Median 53985000 28278000 25707000 0 0 0 0 0 0 35030000 20551000 14479000 3393100 1726700 1666400 15562000 6000200 9561600 0 0 0 12970 3157 13490;13491 65970;65971;65972;65973;65974;65975 66237;66238;66239;66240;66241;66242 66240 1672 6 HDSSTVEVQDDHIKGPLK IKTAKRLVKVKVTFRHDSSTVEVQDDHIKG STVEVQDDHIKGPLKVGAIVEVKNLDGAYQ R H D L K V 0 0 0 3 0 1 1 1 2 1 1 2 0 0 1 2 1 0 0 2 0 0 18 1 2003.9912 X6RCR8;Q4LE39 X6RCR8 44 61 ARID4B AT-rich interactive domain-containing protein 4B yes no 4 0.014317 20.65 By MS/MS 1 0.71919 0.82673 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71919 0.82673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2762400 983370 1779000 0 0 0 0 0 0 2762400 983370 1779000 0 0 0 0 0 0 0 0 0 12971 3024 13492 65976 66243 66243 1 HDSSWVEELLMLHR LPHRTDNSESCVHGKHDSSWVEELLMLHRA KHDSSWVEELLMLHRARITDVEHITGLSFY K H D H R A 0 1 0 1 0 0 2 0 2 0 3 0 1 0 0 2 0 1 0 1 0 0 14 0 1750.8461 P22413 P22413 873 886 ENPP1 Ectonucleotide pyrophosphatase/phosphodiesterase family member 1;Alkaline phosphodiesterase I;Nucleotide pyrophosphatase yes yes 3 0.027234 19.578 By matching By MS/MS 1 1 1.1333 1.0529 21.092 2 Median 0.89821 0.90705 NaN 1 0 Median 1.43 1.2223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3422300 1574800 1847400 615570 337790 277780 2806700 1237100 1569600 0 0 0 0 0 0 0 0 0 0 0 0 12972 2101 13493 65977;65978 66244;66245 66245 2 HDSVFVAAHTSAGK EPDVFQKQAILHLERHDSVFVAAHTSAGKT RHDSVFVAAHTSAGKTVVAEYAIALAQKHM R H D G K T 3 0 0 1 0 0 0 1 2 0 0 1 0 1 0 2 1 0 0 2 0 0 14 0 1425.7001 Q15477 Q15477 325 338 SKIV2L Helicase SKI2W yes yes 2;3 2.222E-08 122.51 By matching By MS/MS By matching By matching By matching 3 3 1 1 1 1.1732 0.99772 15.49 9 Median 0.95585 0.94481 21.344 3 0 Median 1.1732 0.99345 15.116 3 0 Median 0.9362 0.99772 NaN 1 0 Median 1.2485 1.0451 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5378 1.2856 NaN 1 0 Median 18258000 8650700 9607300 4151700 2100800 2050900 11968000 5660600 6307600 822030 361940 460090 958500 384190 574310 0 0 0 357580 143220 214350 12973 2955 13494 65979;65980;65981;65982;65983;65984;65985;65986;65987 66246;66247;66248;66249 66246 4 HDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYK PSRYPPQQQQQQQQRHDSYGNQFSTQGTPS SQQTTMYQQQQQNYKRPMDGTYGPPAKRHE R H D Y K R 0 0 2 1 0 9 0 3 1 0 0 1 1 2 3 5 4 0 3 0 0 0 35 0 3994.7453 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1336 1370 ARID1A AT-rich interactive domain-containing protein 1A yes no 3;4 1.055E-90 154.8 By MS/MS By matching 2 2 0.6725 0.67359 14.635 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54271 0.59863 7.8836 2 0 Median 0.83026 0.75364 7.08 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28307000 15950000 12357000 0 0 0 0 0 0 26895000 15189000 11706000 1412000 761350 650640 0 0 0 0 0 0 12974 1480 13495 65988;65989;65990;65991 66250;66251 66250 2 HDVGAYMLMYK PPCEYKDWLTKMSGKHDVGAYMLMYKGANR MSGKHDVGAYMLMYKGANRTETVTSFRKRE K H D Y K G 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 0 0 2 1 0 0 11 0 1326.6101 P78527 P78527 3850 3860 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 4.2099E-05 133.13 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 6 1.0627 1.0642 34.366 19 Median 1.1907 1.1924 16.108 4 0 Linear 1.3602 1.2124 13.54 3 2 Median 0.91167 0.97536 40.326 6 1 Median 1.4748 1.3961 28.844 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 254830000 130210000 124620000 80130000 39230000 40900000 50844000 21796000 29048000 114500000 65315000 49186000 9357400 3872700 5484800 0 0 0 0 0 0 12975 2647 13496;13497;13498 65992;65993;65994;65995;65996;65997;65998;65999;66000;66001;66002;66003;66004;66005;66006;66007;66008;66009;66010 66252;66253;66254;66255;66256;66257;66258;66259;66260;66261;66262;66263;66264;66265;66266;66267;66268;66269;66270;66271;66272 66254 1317;1318 21 HDVVFLITK EAQNDFPVAMQISEKHDVVFLITKYGYIHL MQISEKHDVVFLITKYGYIHLYDLETGTCI K H D T K Y 0 0 0 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 2 0 0 9 0 1070.6124 A0A087WVQ6;Q00610 A0A087WVQ6 274 282 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00059348 111.17 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1.3848 1.2246 19.903 7 Median 1.2726 1.2199 NaN 1 0 Median 1.2605 1.1103 13.86 2 1 Median 1.3857 1.5432 NaN 1 0 Median 1.259 1.1523 10.993 2 0 Median NaN NaN NaN 0 0 Median 2.1245 1.7744 NaN 1 0 Median 135210000 57299000 77912000 33228000 14652000 18576000 88070000 36802000 51268000 5275200 2181700 3093600 8101700 3453500 4648200 0 0 0 535660 209160 326500 12976 44 13499 66011;66012;66013;66014;66015;66016;66017 66273;66274;66275;66276;66277;66278;66279;66280 66277 8 HDVVQTAVPDGPLQEVPLR VNDYREKLLHLRKLRHDVVQTAVPDGPLQE QTAVPDGPLQEVPLRYLLGMLYINFSALWD R H D L R Y 1 1 0 2 0 2 1 1 1 0 2 0 0 0 3 0 1 0 0 4 0 0 19 0 2069.0906 O75691 O75691 704 722 UTP20 Small subunit processome component 20 homolog yes yes 3 6.7492E-14 106.67 By MS/MS By matching 1 1 0.7294 0.71193 6.1163 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67685 0.74339 NaN 1 0 Median 0.78604 0.68179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6743200 4199000 2544200 0 0 0 0 0 0 6415900 4044400 2371500 327320 154630 172690 0 0 0 0 0 0 12977 1691 13500 66018;66019 66281;66282 66281 2 HDWHQTGGEVTISVYAK MWTKKDAGKKVVPCRHDWHQTGGEVTISVY WHQTGGEVTISVYAKNSLPELSRVEANSTL R H D A K N 1 0 0 1 0 1 1 2 2 1 0 1 0 0 0 1 2 1 1 2 0 0 17 0 1926.9224 Q9UHD1;E9PHZ2 Q9UHD1 232 248 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 3 0.024948 25.957 By MS/MS 1 1.3464 1.2566 NaN 1 Median 1.3464 1.2566 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4135800 1524200 2611600 4135800 1524200 2611600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12978 4275 13501 66020 66283 66283 1 HEAFESDLAAHQDR YETATLSDIKALIRKHEAFESDLAAHQDRV KHEAFESDLAAHQDRVEQIAAIAQELNELD K H E D R V 3 1 0 2 0 1 2 0 2 0 1 0 0 1 0 1 0 0 0 0 0 0 14 0 1624.723 O43707;P12814;H9KV75;H7C5W8;P35609;A0A494C1A0;Q08043;F6THM6;A0A494C060;A0A087WSZ2 O43707 456 469 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 3 8.5778E-10 112.02 By MS/MS By MS/MS By matching 1 2 1 0.86627 0.77336 8.4967 4 Median 0.85706 0.85061 NaN 1 0 Median 0.90727 0.77336 7.2691 2 0 Median NaN NaN NaN 0 0 Median 0.82693 0.70989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14625000 7743000 6881600 1822300 1026500 795860 12208000 6418500 5789000 0 0 0 594750 298020 296730 0 0 0 0 0 0 12979 1585;1983 13502 66021;66022;66023;66024 66284;66285;66286;66287;66288 66288 5 HEAFETDFTVHK DYGDTLAAIQGLLKKHEAFETDFTVHKDRV LKKHEAFETDFTVHKDRVNDVCTNGQDLIK K H E H K D 1 0 0 1 0 0 2 0 2 0 0 1 0 2 0 0 2 0 0 1 0 0 12 0 1459.6732 A0A0D9SF54;Q13813 Q13813 1912 1923 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.0010736 76.165 By MS/MS By MS/MS 2 2 1.1615 1.0029 35.75 4 Median NaN NaN NaN 0 0 Median 0.81975 0.72053 28.968 2 0 Median NaN NaN NaN 0 0 Median 1.3718 1.2311 11.191 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19601000 8406700 11194000 0 0 0 16525000 7336400 9189000 0 0 0 3075800 1070300 2005500 0 0 0 0 0 0 12980 264;2838 13503 66025;66026;66027;66028 66289;66290 66290 1 HEAFETDFTVHKDR DYGDTLAAIQGLLKKHEAFETDFTVHKDRV KHEAFETDFTVHKDRVNDVCTNGQDLIKKN K H E D R V 1 1 0 2 0 0 2 0 2 0 0 1 0 2 0 0 2 0 0 1 0 0 14 1 1730.8012 A0A0D9SF54;Q13813 Q13813 1912 1925 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 4 0.014736 34.432 By MS/MS 1 0.76338 0.9155 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76338 0.9155 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5144100 3081200 2063000 0 0 0 0 0 0 5144100 3081200 2063000 0 0 0 0 0 0 0 0 0 12981 264;2838 13504 66029 66291 66291 1 HEAFFIR VSEGNLLLLHEALAKHEAFFIRCGIFLILE LLHEALAKHEAFFIRCGIFLILEKLKIITY K H E I R C 1 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 7 0 918.47119 Q5JVF3 Q5JVF3 301 307 PCID2 PCI domain-containing protein 2 yes yes 2 0.0021797 122.98 By matching By MS/MS By MS/MS 1 1 1 1.0524 1.1449 18.803 3 Median NaN NaN NaN 0 0 Median 1.2327 1.1512 NaN 1 0 Median 1.0524 1.1449 NaN 1 0 Median 0.93332 0.82897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11562000 5460200 6101700 0 0 0 1623500 660490 963030 8777500 4238300 4539200 1160800 561410 599440 0 0 0 0 0 0 12982 3057 13505 66030;66031;66032 66292;66293;66294 66292 3 HEALLYTWLAEHKPLVLCGPPGSGK VAAPDVVVPTLDTVRHEALLYTWLAEHKPL EHKPLVLCGPPGSGKTMTLFSALRALPDME R H E G K T 2 0 0 0 1 0 2 3 2 0 5 2 0 0 3 1 1 1 1 1 0 0 25 1 2772.4421 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2577 2601 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 4 6.049E-10 61.524 By MS/MS 1 0.91027 0.86922 NaN 1 Median NaN NaN NaN 0 0 Median 0.91027 0.86922 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11942000 4633600 7308500 0 0 0 11942000 4633600 7308500 0 0 0 0 0 0 0 0 0 0 0 0 12983 2865 13506 66033 66295 66295 1 HEALMSDLSAYGSSIQALR DYGKDEDSAEALLKKHEALMSDLSAYGSSI MSDLSAYGSSIQALREQAQSCRQQVAPTDD K H E L R E 3 1 0 1 0 1 1 1 1 1 3 0 1 0 0 4 0 0 1 0 0 0 19 0 2047.9997 A0A0D9SF54;Q13813 Q13813 932 950 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.1187E-07 62.924 By MS/MS By MS/MS By matching 1 2 1 1.2134 1.1995 7.6147 4 Median NaN NaN NaN 0 0 Median 1.283 1.0921 NaN 1 0 Median 1.0854 1.2058 7.9019 2 0 Median 1.4458 1.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7022400 3292000 3730400 0 0 0 1160000 437440 722580 5811100 2833200 2977900 51291 21437 29855 0 0 0 0 0 0 12984 264;2838 13507 66034;66035;66036;66037 66296;66297;66298;66299 66296 4 HEAMITDLEER EEEEKSKSLAKLKNKHEAMITDLEERLRRE LKNKHEAMITDLEERLRREEKQRQELEKTR K H E E R L 1 1 0 1 0 0 3 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1342.6187 P35579 P35579 1025 1035 MYH9 Myosin-9 yes yes 2 2.8852E-08 137.95 By MS/MS By MS/MS By matching 1 4 1 1.0688 0.89965 49.183 6 Median 1.2861 1.2071 NaN 1 1 Median 1.0117 0.85489 48.891 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4197 1.3225 NaN 1 0 Median 65201000 29564000 35637000 14870000 6226100 8643500 45620000 22347000 23273000 0 0 0 0 0 0 0 0 0 4711300 991260 3720100 12985 2244 13508;13509 66038;66039;66040;66041;66042;66043 66300;66301;66302;66303;66304;66305;66306 66300 986 7 HEARPLAELR LLCAKCFEAHQWFLKHEARPLAELRNQSVR QWFLKHEARPLAELRNQSVREFLDGTRKTN K H E L R N 2 2 0 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 10 1 1190.652 H3BT57;P29590 H3BT57 161 170 PML Protein PML yes no 3 0.062081 24.291 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 989210 0 989210 0 0 0 0 0 0 0 0 0 0 0 0 989210 0 989210 0 0 0 12986 1235 13510 66044 66307 66307 1 HECMAPLTALVK VHDDVLELEMDELNRHECMAPLTALVKHMH LNRHECMAPLTALVKHMHRSLGPPQGEEDS R H E V K H 2 0 0 0 1 0 1 0 1 0 2 1 1 0 1 0 1 0 0 1 0 0 12 0 1368.6894 P78527 P78527 2091 2102 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.6052E-05 94.692 By MS/MS By MS/MS 1 1 0.88685 0.86586 14.197 2 Median NaN NaN NaN 0 0 Median 1.0951 0.9573 NaN 1 0 Median 0.71823 0.78316 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8285900 3624400 4661500 0 0 0 5787200 2533700 3253600 2498700 1090800 1407900 0 0 0 0 0 0 0 0 0 12987 2647 13511 66045;66046 66308;66309;66310 66310 3 HECQANGPEDLNR ASSKDAIKKKFQGIKHECQANGPEDLNRAC IKHECQANGPEDLNRACIAEKLGGSLIVAF K H E N R A 1 1 2 1 1 1 2 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1538.6532 P60981 P60981 133 145 DSTN Destrin yes yes 2;3 0.0023447 56.122 By MS/MS 3 1.0503 0.87831 2.0662 2 Median NaN NaN NaN 0 0 Median 1.0503 0.87831 2.0662 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1241600 606850 634710 0 0 0 1241600 606850 634710 0 0 0 0 0 0 0 0 0 0 0 0 12988 2533 13512 66047;66048;66049 66311;66312;66313 66313 3 HEEEFDLFMR DEVPDDETVNQMIARHEEEFDLFMRMDLDR QMIARHEEEFDLFMRMDLDRRREEARNPKR R H E M R M 0 1 0 1 0 0 3 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 10 0 1351.5867 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5 P51532 1309 1318 SMARCA4 Transcription activator BRG1 yes no 2;3 1.3381E-10 176.79 By MS/MS 3 0.91784 1.0016 7.8809 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91784 1.0016 7.8809 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13781000 6654600 7126800 0 0 0 0 0 0 13781000 6654600 7126800 0 0 0 0 0 0 0 0 0 12989 366 13513 66050;66051;66052 66314;66315;66316 66315 3 HEERQDEHGYISR LTVKTKDGVVEITGKHEERQDEHGYISRCF GKHEERQDEHGYISRCFTRKYTLPPGVDPT K H E S R C 0 2 0 1 0 1 3 1 2 1 0 0 0 0 0 1 0 0 1 0 0 0 13 1 1654.7448 P04792 P04792 124 136 HSPB1 Heat shock protein beta-1 yes yes 4 0.011249 26.13 By MS/MS By matching By matching 1 1 1 1.3017 1.1055 5.3492 3 Median 1.025 1.0956 NaN 1 0 Median 1.3017 1.1055 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.348 1.207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1523500 696900 826610 769430 366670 402760 659850 284680 375170 0 0 0 94239 45562 48677 0 0 0 0 0 0 12990 1851 13514 66053;66054;66055 66317;66318 66317 2 HEGLGAFYK GQYSGIYDCAKKILKHEGLGAFYKGYVPNL AKKILKHEGLGAFYKGYVPNLLGIIPYAGI K H E Y K G 1 0 0 0 0 0 1 2 1 0 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1020.5029 Q6NUK1 Q6NUK1 337 345 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.0006654 106.04 By MS/MS By MS/MS 1 1 1.4988 1.3292 20.692 2 Median 1.2372 1.1483 NaN 1 0 Median 1.8158 1.5387 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23934000 9603700 14330000 11431000 5194800 6236100 12503000 4408900 8093700 0 0 0 0 0 0 0 0 0 0 0 0 12991 3143 13515 66056;66057 66319;66320;66321 66319 3 HEGPSAFLK DTYSGILDCARKILRHEGPSAFLKGAYCRA ARKILRHEGPSAFLKGAYCRALVIAPLFGI R H E L K G 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 1 0 0 0 0 0 0 9 0 984.50288 Q9H936;E9PJH7 Q9H936 278 286 SLC25A22 Mitochondrial glutamate carrier 1 yes no 2 0.0037586 80.229 By MS/MS By MS/MS 1 1 1.1429 0.96233 NaN 1 Median NaN NaN NaN 0 0 Median 1.1429 0.96233 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2829300 1415600 1413800 0 0 0 2829300 1415600 1413800 0 0 0 0 0 0 0 0 0 0 0 0 12992 943 13516 66058;66059 66322;66323 66323 2 HEHQLMLMR REAKEKLEAEMEAARHEHQLMLMRQDLMRR EMEAARHEHQLMLMRQDLMRRQEELRRLEE R H E M R Q 0 1 0 0 0 1 1 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 9 0 1193.5798 Q8WXF1 Q8WXF1 313 321 PSPC1 Paraspeckle component 1 yes yes 3 0.0010507 73.985 By MS/MS By MS/MS By MS/MS 2 4 2 0.9973 0.95101 7.3925 2 Median NaN NaN NaN 0 0 Median 1.0465 0.90258 NaN 1 0 Median 0.95043 1.002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27865000 2816400 25049000 0 0 0 4974100 677340 4296700 20315000 2139100 18176000 2576300 0 2576300 0 0 0 0 0 0 12993 3520 13517;13518 66060;66061;66062;66063;66064;66065;66066;66067 66324;66325;66326;66327;66328;66329;66330 66325 1752 7 HEHQVMLMR KEAREKLEMEMEAARHEHQVMLMRQDLMRR EMEAARHEHQVMLMRQDLMRRQEELRRMEE R H E M R Q 0 1 0 0 0 1 1 0 2 0 1 0 2 0 0 0 0 0 0 1 0 0 9 0 1179.5641 Q15233;H7C367;C9JYS8 Q15233 305 313 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.0031588 67.032 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 1.2984 1.1517 23.515 7 Median NaN NaN NaN 0 0 Median 1.2015 1.0185 NaN 1 0 Median 1.1433 1.1517 26.681 3 1 Median 1.2984 1.1236 NaN 1 0 Median 1.7843 1.7997 NaN 1 1 Median 1.5909 1.37 NaN 1 1 Median 20025000 6118800 13906000 0 0 0 5091600 2047100 3044500 9077300 2612300 6465000 817490 325410 492080 2847900 269760 2578200 2190200 864160 1326100 12994 2935 13519;13520 66068;66069;66070;66071;66072;66073;66074;66075;66076 66331;66332;66333;66334;66335;66336;66337;66338;66339;66340;66341;66342 66336 1616 12 HEIEGTGLPQAQLLWR FYEDQYGVALFNSMRHEIEGTGLPQAQLLW EIEGTGLPQAQLLWRKVPLDERIVFSGNLF R H E W R K 1 1 0 0 0 2 2 2 1 1 3 0 0 0 1 0 1 1 0 0 0 0 16 0 1846.969 Q96TA1 Q96TA1 46 61 FAM129B Niban-like protein 1 yes yes 3 0.0020232 30.133 By MS/MS By matching 1 1 1.1129 1.0498 19.404 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1262 1.2042 NaN 1 0 Median 1.0998 0.91523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2468800 1194100 1274800 0 0 0 0 0 0 2276100 1083400 1192700 192710 110670 82031 0 0 0 0 0 0 12995 3743 13521 66077;66078 66343 66343 1 HEILLSQSVR LVTSGAVAFGKQRLRHEILLSQSVRQALHS KQRLRHEILLSQSVRQALHSGQNQLKEMAI R H E V R Q 0 1 0 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1180.6564 P54886 P54886 129 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 7.0516E-18 158.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1.4367 1.3313 14.939 7 Median 1.0033 0.96349 NaN 1 0 Median 1.4367 1.2422 NaN 1 0 Median 1.2455 1.2988 5.6793 2 0 Median 1.5454 1.332 0.073565 2 2 Median NaN NaN NaN 0 0 Median 1.9549 1.5843 NaN 1 0 Median 68341000 28193000 40147000 4519900 2085100 2434800 6269600 2512000 3757500 24084000 10852000 13233000 32605000 12366000 20239000 0 0 0 861560 377910 483650 12996 2488 13522 66079;66080;66081;66082;66083;66084;66085 66344;66345;66346;66347;66348;66349;66350;66351 66349 8 HEIVQTLSLK AGLYGSHLYVWDWQRHEIVQTLSLKDGLIP WDWQRHEIVQTLSLKDGLIPLEIRFLHNPD R H E L K D 0 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1166.6659 A6PVX1;H0Y532;Q13228 A6PVX1 220 229 SELENBP1 Selenium-binding protein 1 yes no 2 0.00038264 79.986 By MS/MS By matching 1 1 0.79638 0.71795 16.149 2 Median 0.68514 0.64047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92569 0.8048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8699600 4982800 3716900 8028600 4700900 3327800 0 0 0 0 0 0 670990 281890 389100 0 0 0 0 0 0 12997 534 13523 66086;66087 66352 66352 1 HEKEDGAISTIVLR VYLSEVGDTQVVVFKHEKEDGAISTIVLRG KHEKEDGAISTIVLRGSTDNLMDDIERAVD K H E L R G 1 1 0 1 0 0 2 1 1 2 1 1 0 0 0 1 1 0 0 1 0 0 14 1 1566.8366 P50990 P50990 365 378 CCT8 T-complex protein 1 subunit theta yes yes 3 0.00019413 65.895 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1729 1.0792 14.536 6 Plateau 1.0906 1.0902 8.8137 2 1 Median 1.0511 0.96005 19.303 2 0 Median 1.1541 1.2945 NaN 1 0 Median 1.1279 1.0584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78885000 36795000 42090000 28712000 13021000 15691000 32705000 15743000 16962000 11002000 5201200 5800800 6466600 2829800 3636800 0 0 0 0 0 0 12998 2423 13524 66088;66089;66090;66091;66092;66093 66353;66354;66355;66356;66357;66358;66359;66360;66361 66353 9 HELAEIVFK VLLRALPVPRAKHVKHELAEIVFKVGKVID RAKHVKHELAEIVFKVGKVIDPVTGKPCAG K H E F K V 1 0 0 0 0 0 2 0 1 1 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1084.5917 I3L0E3;E9PE17;Q9Y2R5 I3L0E3 174 182 hCG_1984214;MRPS17 28S ribosomal protein S17, mitochondrial yes no 2 0.00052246 107.66 By MS/MS By MS/MS 1 1 0.9162 0.83195 25.592 2 Median NaN NaN NaN 0 0 Median 1.1606 0.99698 NaN 1 1 Median 0.72324 0.69423 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11904000 7816500 4087200 0 0 0 3779300 1815300 1964000 8124300 6001200 2123200 0 0 0 0 0 0 0 0 0 12999 1268 13525 66094;66095 66362;66363 66363 2 HELIEFR YDNFDNISLAQRLEKHELIEFRRIAAYLFK SLAQRLEKHELIEFRRIAAYLFKGNNRWKQ K H E F R R 0 1 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 942.49232 A0A087WVQ6;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 1506 1512 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00030056 145.04 By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 1.4684 1.3508 23.987 8 Median 1.1908 1.1542 21.716 2 0 Median 1.6057 1.3726 27.843 4 0 Median 0.98479 1.082 NaN 1 0 Median 1.6247 1.4321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95344000 42187000 53157000 17348000 9024700 8323300 64386000 27034000 37352000 6268900 3142700 3126100 7341400 2985400 4356000 0 0 0 0 0 0 13000 44 13526 66096;66097;66098;66099;66100;66101;66102;66103 66364;66365;66366;66367;66368;66369;66370;66371;66372;66373 66367 10 HELLLGAGSGPGAGQQQATPGALLQAGPPR RKGPELPLVPVKRQRHELLLGAGSGPGAGQ QQATPGALLQAGPPRCSSLQAPIMLLSGHE R H E P R C 5 1 0 0 0 4 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 30 0 2848.4944 Q96DI7 Q96DI7 22 51 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 3 3.2821E-60 151.91 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 0.5188 0.51555 14.472 7 Median 0.5188 0.51918 NaN 1 1 Median 0.66506 0.59368 NaN 1 0 Median 0.4378 0.45262 18.411 2 0 Median 0.6998 0.62068 NaN 1 0 Median 0.50666 0.51382 NaN 1 0 Median 0.61646 0.48602 NaN 1 0 Median 72885000 48676000 24208000 2744600 2115000 629630 307020 200480 106530 57949000 38684000 19265000 1440300 795340 644920 10353000 6821900 3531400 90183 59411 30771 13001 3627 13527 66104;66105;66106;66107;66108;66109;66110 66374;66375;66376;66377;66378;66379;66380;66381 66378 8 HELLQPFNVLYEK EDEKKARMGVVECAKHELLQPFNVLYEKEG AKHELLQPFNVLYEKEGEFVAQFKFTVLLM K H E E K E 0 0 1 0 0 1 2 0 1 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1628.8562 Q9UQ80 Q9UQ80 299 311 PA2G4 Proliferation-associated protein 2G4 yes yes 2;3 4.9745E-07 167.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 2 1 0.93079 0.88173 9.2754 12 Median 0.88271 0.82114 15.659 3 0 Median 0.92972 0.79251 1.4295 2 0 Median 0.90813 0.88943 3.8095 4 0 Median 1.0039 0.90814 4.3374 2 0 Median 1.0088 0.97515 NaN 1 0 Median NaN NaN NaN 0 0 Median 342810000 170600000 172210000 20619000 10503000 10115000 20131000 10200000 9930600 113820000 58983000 54832000 187680000 90632000 97044000 569560 278180 291380 0 0 0 13002 4360 13528 66111;66112;66113;66114;66115;66116;66117;66118;66119;66120;66121;66122 66382;66383;66384;66385;66386;66387;66388;66389;66390;66391;66392;66393;66394;66395;66396;66397;66398;66399;66400 66391 19 HELLSLASSNHLGK VLMWELEKKSAVADKHELLSLASSNHLGKN KHELLSLASSNHLGKNLQLLMDRVDEMSQD K H E G K N 1 0 1 0 0 0 1 1 2 0 4 1 0 0 0 3 0 0 0 0 0 0 14 0 1504.7998 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 242 255 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 3 3.6209E-06 87.831 By MS/MS By MS/MS By MS/MS 1 1 1 1.2109 1.2605 11.584 3 Plateau 1.0778 1.0058 NaN 1 0 Median 1.2753 1.0908 NaN 1 0 Median 1.2109 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17561000 7649400 9911400 4607800 2292900 2314900 5569200 2097200 3472000 7383800 3259300 4124500 0 0 0 0 0 0 0 0 0 13003 584 13529 66123;66124;66125 66401;66402;66403;66404;66405 66403 5 HELQANCYEEVK ASSKDAIKKKLTGIKHELQANCYEEVKDRC GIKHELQANCYEEVKDRCTLAEKLGGSAVI K H E V K D 1 0 1 0 1 1 3 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1518.6773 P23528;G3V1A4;E9PK25;E9PP50 P23528 133 144 CFL1 Cofilin-1 yes no 2;3 0.00030106 56.951 By MS/MS 2 1.1651 1.0055 2.8236 2 Median NaN NaN NaN 0 0 Median 1.1651 1.0055 2.8236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466600 1839300 2627200 0 0 0 4466600 1839300 2627200 0 0 0 0 0 0 0 0 0 0 0 0 13004 2118 13530 66126;66127 66406;66407;66408 66406 3 HELQANCYEEVKDR ASSKDAIKKKLTGIKHELQANCYEEVKDRC KHELQANCYEEVKDRCTLAEKLGGSAVISL K H E D R C 1 1 1 1 1 1 3 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 14 1 1789.8053 P23528;G3V1A4;E9PK25;E9PP50 P23528 133 146 CFL1 Cofilin-1 yes no 3;4 1.6511E-07 118.13 By MS/MS By MS/MS 2 2 1.1901 1.0842 5.2782 4 Median 1.1467 1.1388 5.5965 2 0 Median 1.2028 1.0614 1.6552 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17831000 8362100 9469100 3764700 1752100 2012700 14067000 6610000 7456500 0 0 0 0 0 0 0 0 0 0 0 0 13005 2118 13531 66128;66129;66130;66131 66409;66410;66411;66412;66413;66414;66415 66411 7 HELQVEMK AAELEKKLDSELTARHELQVEMKKMESDFE DSELTARHELQVEMKKMESDFEQKLQDLQG R H E M K K 0 0 0 0 0 1 2 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 1012.5012 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 496 503 DIAPH1 Protein diaphanous homolog 1 yes no 2 9.868E-10 178.94 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1.2684 1.1566 18.251 7 Median 1.1363 1.1244 3.9879 2 0 Median 1.2654 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4562 1.3113 NaN 1 0 Median 1.6674 1.7663 NaN 1 1 Median 1.3677 1.1451 13.178 2 0 Median 25796000 12115000 13681000 4054200 1966200 2088100 15134000 6894700 8239600 0 0 0 363710 133510 230200 2065500 1144800 920700 4178200 1975600 2202600 13006 274 13532 66132;66133;66134;66135;66136;66137;66138 66416;66417;66418;66419;66420;66421;66422 66420 7 HELTEISNVDVETQSGK DIDISSPEFKIKIPRHELTEISNVDVETQS LTEISNVDVETQSGKTVIRLPSGSGAASPT R H E G K T 0 0 1 1 0 1 3 1 1 1 1 1 0 0 0 2 2 0 0 2 0 0 17 0 1884.9065 Q09666 Q09666 187 203 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.4812E-107 265.95 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 5 1.1298 1.0242 22.877 15 Median 1.2952 1.3046 27.111 4 0 Linear 0.97292 0.86134 7.8449 2 0 Median 1.2848 1.3825 8.9154 4 0 Median 1.1298 1.0226 4.8306 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132520000 59110000 73412000 60875000 27007000 33867000 14501000 7337600 7163500 41891000 17844000 24048000 15255000 6920900 8334000 0 0 0 0 0 0 13007 2749 13533 66139;66140;66141;66142;66143;66144;66145;66146;66147;66148;66149;66150;66151;66152;66153 66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437;66438;66439 66426 17 HEMLPASLIQAQR MPCFTTALSFYDGYRHEMLPASLIQAQRDY YRHEMLPASLIQAQRDYFGAHTYELLAKPG R H E Q R D 2 1 0 0 0 2 1 0 1 1 2 0 1 0 1 1 0 0 0 0 0 0 13 0 1492.782 P52209 P52209 435 447 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 2;3 4.9928E-06 130.94 By MS/MS By matching 3 1 0.92345 0.88807 8.6847 3 Median 0.89486 0.85708 5.0236 2 1 Median 1.1486 0.98319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24091000 12607000 11483000 21196000 11394000 9802500 2894900 1213900 1680900 0 0 0 0 0 0 0 0 0 0 0 0 13008 2447 13534 66154;66155;66156;66157 66440;66441;66442;66443 66443 4 HEMLPEFYK RRAAAKCLDAVVSTRHEMLPEFYKTVSPAL AVVSTRHEMLPEFYKTVSPALISRFKEREE R H E Y K T 0 0 0 0 0 0 2 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 9 0 1192.5587 Q86VP6;A0A0C4DGH5;H0YH27 Q86VP6 365 373 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.00022729 121.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 2 0.94195 0.93277 14.888 11 Median 0.88769 0.8566 7.1801 2 1 Median 0.96494 0.8166 18.809 2 0 Median 0.91803 0.97743 3.3724 2 0 Median 1.1924 1.0402 10.715 3 2 Median NaN NaN NaN 0 0 Median 1.0106 0.83781 28.526 2 0 Median 158160000 80631000 77529000 43424000 21454000 21970000 22100000 11075000 11024000 67067000 36634000 30433000 23192000 10336000 12856000 0 0 0 2377200 1131400 1245800 13009 3288 13535;13536 66158;66159;66160;66161;66162;66163;66164;66165;66166;66167;66168 66444;66445;66446;66447;66448;66449;66450;66451;66452;66453 66449 1704 10 HEMPPHIYAISESAYR IYSENIIEMYRGKKRHEMPPHIYAISESAY EMPPHIYAISESAYRCMLQDREDQSILCTG R H E Y R C 2 1 0 0 0 0 2 0 2 2 0 0 1 0 2 2 0 0 2 0 0 0 16 0 1899.8938 P35580;E7ERA5 P35580 148 163 MYH10 Myosin-10 yes no 3 3.8763E-10 121.31 By MS/MS By MS/MS By matching 2 2 1 0.94615 0.80703 24.351 5 Median 0.75572 0.71058 12.665 2 0 Median 0.96122 0.82023 2.2936 2 0 Median NaN NaN NaN 0 0 Median 1.3414 1.2587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35865000 18693000 17173000 22491000 12151000 10340000 12599000 6242100 6356800 0 0 0 775620 300180 475440 0 0 0 0 0 0 13010 2245 13537;13538 66169;66170;66171;66172;66173 66454;66455;66456;66457;66458 66458 1002 5 HEMPPHIYAITDTAYR IYSEEIVEMYKGKKRHEMPPHIYAITDTAY EMPPHIYAITDTAYRSMMQDREDQSILCTG R H E Y R S 2 1 0 1 0 0 1 0 2 2 0 0 1 0 2 0 2 0 2 0 0 0 16 0 1913.9094 P35579;Q5BKV1 P35579 144 159 MYH9 Myosin-9 yes no 2;3 5.5971E-11 160.47 By MS/MS By MS/MS By matching 4 4 2 0.79161 0.72115 16.437 10 Median 0.77371 0.7259 7.4865 4 2 Median 0.86514 0.75027 10.75 4 0 Median 0.46906 0.53129 4.2107 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 240170000 130400000 109770000 167110000 90718000 76393000 64085000 33961000 30124000 8976900 5723200 3253700 0 0 0 0 0 0 0 0 0 13011 2244 13539;13540 66174;66175;66176;66177;66178;66179;66180;66181;66182;66183 66459;66460;66461;66462;66463;66464;66465;66466;66467;66468;66469;66470;66471;66472;66473;66474;66475;66476;66477 66472 987 19 HENVIGIR CQRTLREIQILLRFRHENVIGIRDILRAST QILLRFRHENVIGIRDILRASTLEAMRDVY R H E I R D 0 1 1 0 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 936.51411 P27361;E9PJF0;E9PQW4;E9PBK7 P27361 97 104 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase yes no 2 0.019915 67.032 By MS/MS 1 0.86366 0.73782 NaN 1 Median NaN NaN NaN 0 0 Median 0.86366 0.73782 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1414000 706480 707500 0 0 0 1414000 706480 707500 0 0 0 0 0 0 0 0 0 0 0 0 13012 2153 13541 66184 66478 66478 1 HENYDEALR DLASVWCQCGELELRHENYDEALRLLRKAT GELELRHENYDEALRLLRKATALPARRAEY R H E L R L 1 1 1 1 0 0 2 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1145.5102 Q9HCS7 Q9HCS7 446 454 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.012944 60.478 By MS/MS 1 2.2742 2.0632 NaN 1 Median NaN NaN NaN 0 0 Median 2.2742 2.0632 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 854040 244460 609580 0 0 0 854040 244460 609580 0 0 0 0 0 0 0 0 0 0 0 0 13013 4032 13542 66185 66479 66479 1 HEPIGYDR TDCVAEIQKNKPYIRHEPIGYDRSRRKYWF KNKPYIRHEPIGYDRSRRKYWFLNRRLIIE R H E D R S 0 1 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 8 0 985.46174 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 458 465 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.060654 32.47 By MS/MS By matching By matching 1 1 1 0.84521 0.77481 7.0982 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69316 0.77481 NaN 1 0 Median 0.95293 0.8262 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84521 0.71701 NaN 1 0 Median 915900 524860 391050 0 0 0 0 0 0 667850 390490 277370 116900 63436 53461 0 0 0 131160 70936 60219 13014 2762 13543 66186;66187;66188 66480 66480 1 HEQASNVLSDISEFR ALYELSYHVIKGNLKHEQASNVLSDISEFR HEQASNVLSDISEFREDMPSILADVFCILD K H E F R E 1 1 1 1 0 1 2 0 1 1 1 0 0 1 0 3 0 0 0 1 0 0 15 0 1730.8224 Q8NI27;F2Z2V2 Q8NI27 63 77 THOC2 THO complex subunit 2 yes no 3 9.1833E-05 54.501 By MS/MS By matching 1 2 1.0366 0.92631 10.933 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83497 0.92631 NaN 1 0 Median 1.1374 1.002 14.068 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3611800 1901900 1709900 0 0 0 0 0 0 3202800 1726000 1476800 408920 175880 233030 0 0 0 0 0 0 13015 3448 13544 66189;66190;66191 66481;66482 66482 2 HEQEYMEVR EEMINELAVAMTAVKHEQEYMEVRERIHRA AMTAVKHEQEYMEVRERIHRAINDNTNSRV K H E V R E 0 1 0 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 9 0 1219.5292 Q15363;E7EQ72;F5GX39 Q15363 146 154 TMED2 Transmembrane emp24 domain-containing protein 2 yes no 2;3 0.0014358 81.548 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1.1802 1.0539 24.683 8 Median 1.0636 1.0228 17.408 3 0 Median 1.1181 0.96722 31.725 4 0 Median 1.3188 1.251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36371000 16885000 19485000 23308000 11477000 11832000 10301000 4277300 6023900 2761000 1131000 1629900 0 0 0 0 0 0 0 0 0 13016 876 13545 66192;66193;66194;66195;66196;66197;66198;66199;66200 66483;66484;66485;66486;66487;66488;66489;66490;66491 66489 9 HEQGLSTALSVEK IMQKYGFREGQGLGKHEQGLSTALSVEKTS GKHEQGLSTALSVEKTSKRGGKIIVGDATE K H E E K T 1 0 0 0 0 1 2 1 1 0 2 1 0 0 0 2 1 0 0 1 0 0 13 0 1397.7151 Q96I25;H0Y6J6;Q5W012 Q96I25 257 269 RBM17 Splicing factor 45 yes no 2 3.4854E-11 143.97 By MS/MS By MS/MS By matching 1 1 1 0.90611 0.73432 149.78 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95385 0.92685 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.064906 0.062115 NaN 1 1 Median 0.90611 0.73432 NaN 1 0 Median 65825000 56720000 9104200 0 0 0 0 0 0 8905000 4391000 4514000 0 0 0 56214000 51890000 4324000 705500 439290 266210 13017 3674 13546 66201;66202;66203 66492;66493;66494 66494 3 HEQIFDSPQGPNFNGPHGPGNQSFSNPLNR GNAFNAPSQGLQFQRHEQIFDSPQGPNFNG PHGPGNQSFSNPLNRASGHYFDEKNLQSSQ R H E N R A 0 1 5 1 0 3 1 4 2 1 1 0 0 3 5 3 0 0 0 0 0 0 30 0 3288.5085 O94913 O94913 1155 1184 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 4 1.0045E-09 51.321 By MS/MS 1 0.37306 0.41071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37306 0.41071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5442900 4281800 1161200 0 0 0 0 0 0 5442900 4281800 1161200 0 0 0 0 0 0 0 0 0 13018 1736 13547 66204 66495 66495 1 HEQISDLER LKLEKGDYTIRLQIRHEQISDLERLKDLPF IRLQIRHEQISDLERLKDLPFIVSHRLSNT R H E E R L 0 1 0 1 0 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1125.5415 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 824 832 TPP2 Tripeptidyl-peptidase 2 yes no 2 4.8427E-12 147.51 By MS/MS 1 1.0801 0.90717 NaN 1 Median NaN NaN NaN 0 0 Median 1.0801 0.90717 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6865700 3190200 3675500 0 0 0 6865700 3190200 3675500 0 0 0 0 0 0 0 0 0 0 0 0 13019 461 13548 66205 66496 66496 1 HEQNIDCGGGYVK FSNKGQTLVVQFTVKHEQNIDCGGGYVKLF VKHEQNIDCGGGYVKLFPNSLDQTDMHGDS K H E V K L 0 0 1 1 1 1 1 3 1 1 0 1 0 0 0 0 0 0 1 1 0 0 13 0 1475.6463 P27797 P27797 99 111 CALR Calreticulin yes yes 2;3 2.522E-06 120.77 By matching By MS/MS 1 2 1.2094 1.0293 2.2321 3 Plateau 1.0727 1.0557 NaN 1 0 Median 1.1978 1.0195 1.3542 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11044000 5013100 6031200 931480 484260 447220 10113000 4528900 5584000 0 0 0 0 0 0 0 0 0 0 0 0 13020 2157 13549 66206;66207;66208 66497;66498;66499 66499 3 HESGASIKIDEPLEGSEDR GSIIGKGGQRIKQIRHESGASIKIDEPLEG ASIKIDEPLEGSEDRIITITGTQDQIQNAQ R H E D R I 1 1 0 2 0 0 4 2 1 2 1 1 0 0 1 3 0 0 0 0 0 0 19 1 2067.9709 P61978;S4R359 P61978 415 433 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2;3;4 3.9315E-21 162.15 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 4 3 0.88008 0.82574 15.362 11 Median 1.067 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80976 0.90876 13.548 2 0 Median 0.91222 0.7996 NaN 1 0 Median 0.74768 0.75962 12.09 4 0 Median 1.0027 0.89868 17.56 3 0 Median 165610000 87816000 77789000 5969200 3207500 2761800 0 0 0 29343000 15020000 14322000 1498100 842040 656030 113690000 61705000 51989000 15102000 7041400 8060600 13021 2565 13550 66209;66210;66211;66212;66213;66214;66215;66216;66217;66218;66219 66500;66501;66502;66503;66504;66505;66506;66507;66508;66509;66510 66506 10 HESQMDSVVK AELLYKRIIRPFFLKHESQMDSVVKDLKDK PFFLKHESQMDSVVKDLKDKAKETADAITK K H E V K D 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 2 0 0 0 2 0 0 10 0 1158.5339 Q00765;E2QRG8 Q00765 148 157 REEP5 Receptor expression-enhancing protein 5;Receptor expression-enhancing protein yes no 2 0.0011182 68.371 By matching By MS/MS 1 1 1.1871 1.0691 8.4113 2 Median 1.2004 1.1346 NaN 1 0 Median 1.174 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7544200 3380000 4164200 2323900 995800 1328100 5220300 2384200 2836100 0 0 0 0 0 0 0 0 0 0 0 0 13022 2678 13551 66220;66221 66511;66512 66512 2 HETLPYGRPR QTQFNLTVAEEKIIKHETLPYGRPRVLQKE EKIIKHETLPYGRPRVLQKENTICLLSQHQ K H E P R V 0 2 0 0 0 0 1 1 1 0 1 0 0 0 2 0 1 0 1 0 0 0 10 1 1224.6364 P22413 P22413 654 663 ENPP1 Ectonucleotide pyrophosphatase/phosphodiesterase family member 1;Alkaline phosphodiesterase I;Nucleotide pyrophosphatase yes yes 3 0.0030993 44.882 By MS/MS 1 0.83936 0.80921 NaN 1 Median NaN NaN NaN 0 0 Median 0.83936 0.80921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2006900 991600 1015300 0 0 0 2006900 991600 1015300 0 0 0 0 0 0 0 0 0 0 0 0 13023 2101 13552 66222 66513 66513 1 HETLTSLNLEK GCIFMVIEGKKAAQRHETLTSLNLEKKARL AAQRHETLTSLNLEKKARLKEEAAMKAKTE R H E E K K 0 0 1 0 0 0 2 0 1 0 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1283.6721 Q96A26;F8W7Q4 Q96A26 129 139 FAM162A Protein FAM162A yes no 2;3 6.3389E-95 273.44 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 4 1 1 1.1702 1.1171 15.993 10 Median 1.1742 1.1016 NaN 1 0 Median 1.5805 1.3327 5.0134 3 0 Median 0.97031 1.0286 9.9498 4 0 Median 0.83629 0.84963 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5564 1.28 NaN 1 0 Median 221720000 96596000 125130000 64901000 29127000 35774000 90597000 34416000 56180000 58762000 30066000 28696000 1930900 1041900 888920 0 0 0 5530200 1944300 3585900 13024 1085 13553 66223;66224;66225;66226;66227;66228;66229;66230;66231;66232 66514;66515;66516;66517;66518;66519;66520;66521;66522;66523;66524;66525;66526;66527 66523 14 HETLTSLNLEKK GCIFMVIEGKKAAQRHETLTSLNLEKKARL AQRHETLTSLNLEKKARLKEEAAMKAKTE_ R H E K K A 0 0 1 0 0 0 2 0 1 0 3 2 0 0 0 1 2 0 0 0 0 0 12 1 1411.7671 Q96A26;F8W7Q4 Q96A26 129 140 FAM162A Protein FAM162A yes no 2;3 1.662E-06 140.14 By MS/MS By MS/MS By MS/MS 1 3 1 1.2672 1.2263 9.9014 5 Median 1.2672 1.2684 NaN 1 0 Median 1.3872 1.2263 13.163 3 0 Median 1.1266 1.1541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23684000 8952800 14731000 5811700 2129500 3682200 16054000 5963300 10090000 1818700 860000 958700 0 0 0 0 0 0 0 0 0 13025 1085 13554 66233;66234;66235;66236;66237 66528;66529;66530;66531;66532;66533;66534;66535 66534 8 HETWSGHVISS QAVEVVITHLAPGTKHETWSGHVISS____ PGTKHETWSGHVISS_______________ K H E S S - 0 0 0 0 0 0 1 1 2 1 0 0 0 0 0 3 1 1 0 1 0 0 11 0 1238.568 Q9Y2V2 Q9Y2V2 137 147 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 2;3 0.0035972 55.084 By MS/MS By MS/MS By MS/MS 2 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76191000 0 0 58621000 0 0 13260000 0 0 4310300 0 0 0 0 0 0 0 0 0 0 0 13026 4393 13555 66238;66239;66240;66241;66242 66536;66537;66538;66539;66540;66541 66540 6 HEVGALVR LKLVFPGAQRMNRGRHEVGALVRACKANGV QRMNRGRHEVGALVRACKANGVTDLLVVHE R H E V R A 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 879.49265 E7ENR5;H0Y714;Q96G21;B9A008;B8ZZ47 E7ENR5 64 71 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.028842 40.103 By matching By matching By MS/MS 2 1 1 1.0903 1.1018 7.4541 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0903 1.1431 7.9508 2 0 Median 1.167 1.0117 NaN 1 0 Median 1.06 1.1234 NaN 1 0 Median NaN NaN NaN 0 0 Median 2078000 1012600 1065400 0 0 0 0 0 0 807240 322800 484450 100580 54234 46351 1170200 635570 534590 0 0 0 13027 865 13556 66243;66244;66245;66246 66542 66542 1 HEVININLK FAERTRLVLKAKGIRHEVININLKNKPEWF KAKGIRHEVININLKNKPEWFFKKNPFGLV R H E L K N 0 0 2 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1078.6135 P78417;Q5TA02;Q5TA01 P78417 49 57 GSTO1 Glutathione S-transferase omega-1 yes no 2 1.1901E-80 256.45 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.95202 0.84814 9.5481 8 Median 0.94574 0.86917 12.722 3 0 Median 1.1421 0.94786 8.9111 3 0 Plateau 0.84506 0.79217 NaN 1 0 Median 1 0.82761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 299500000 150340000 149160000 226760000 116020000 110740000 54391000 24763000 29627000 16628000 8658300 7970000 1727400 902480 824890 0 0 0 0 0 0 13028 2646 13557 66247;66248;66249;66250;66251;66252;66253;66254 66543;66544;66545;66546;66547;66548;66549;66550;66551;66552;66553 66552 11 HEVLLISAEQDKR QIKITGTKEGIEKARHEVLLISAEQDKRAV ARHEVLLISAEQDKRAVERLEVEKAFHPFI R H E K R A 1 1 0 1 0 1 2 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 13 1 1536.826 Q00341;A0A024R4E5;H0Y394;H7C0A4;C9JIZ1 Q00341 210 222 HDLBP Vigilin yes no 3 2.3223E-07 113.24 By MS/MS By MS/MS By MS/MS 2 1 1 1.0531 0.99636 15.72 4 Median 0.89626 0.91359 25.07 2 0 Median 1.0289 0.95406 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0779 1.0405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30929000 15273000 15656000 14720000 7206300 7514000 12590000 6213800 6375900 0 0 0 3619000 1852700 1766300 0 0 0 0 0 0 13029 4 13558 66255;66256;66257;66258 66554;66555;66556;66557;66558 66554 5 HEVNYQNVVHK ISTKCSMCQKNAVIRHEVNYQNVVHKLCSD AVIRHEVNYQNVVHKLCSDACFSKFRSANN R H E H K L 0 0 2 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 1 3 0 0 11 0 1365.6789 Q5VZL5;H7C1I7 Q5VZL5 455 465 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.062531 12.631 By MS/MS 1 0.89203 0.98961 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89203 0.98961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1296000 691370 604590 0 0 0 0 0 0 1296000 691370 604590 0 0 0 0 0 0 0 0 0 13030 3117 13559 66259 66559 66559 1 HEVPPHVYAVTEGAYR IYTEAIVEMYRGKKRHEVPPHVYAVTEGAY EVPPHVYAVTEGAYRSMLQDREDQSILCTG R H E Y R S 2 1 0 0 0 0 2 1 2 0 0 0 0 0 2 0 1 0 2 3 0 0 16 0 1823.8955 Q7Z406 Q7Z406 168 183 MYH14 Myosin-14 no no 3 8.8383E-12 110.38 By MS/MS By MS/MS 1 1 0.7674 0.69016 19.389 2 Median 0.6356 0.60174 NaN 1 1 Median 0.92652 0.79158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11901000 6054700 5846700 5967200 3506700 2460500 5934200 2548000 3386200 0 0 0 0 0 0 0 0 0 0 0 0 13031 3242 13560 66260;66261 66560;66561;66562;66563 66562 4 HFAGDVLGYVTPWNSHGYDVTK VLEHRSYCSAKARDRHFAGDVLGYVTPWNS GYVTPWNSHGYDVTKVFGSKFTQISPVWLQ R H F T K V 1 0 1 2 0 0 0 3 2 0 1 1 0 1 1 1 2 1 2 3 0 0 22 0 2462.1655 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0 Q9BWS9 76 97 CHID1 Chitinase domain-containing protein 1 yes no 3 0.00010007 33.833 By MS/MS By matching 1 1 0.80379 0.74931 12.109 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66536 0.68782 NaN 1 0 Median 0.97103 0.8163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10884000 6393000 4490600 0 0 0 0 0 0 10070000 5981900 4088500 813110 411050 402060 0 0 0 0 0 0 13032 3874 13561 66262;66263 66564;66565 66564 2 HFALMQR SQEDCEGSSLPAAFKHFALMQRDSWVDIFR SSLPAAFKHFALMQRDSWVDIFRLLFWGGS K H F Q R D 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 901.45924 CON__Q3ZBS7 CON__Q3ZBS7 308 314 yes yes 2 1.2386E-20 163.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 0.10212 0.092618 57.263 6 Median NaN NaN NaN 0 0 Median 0.15245 0.13223 NaN 1 1 Median 0.094324 0.099498 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.14 0.14493 NaN 1 1 Median 0.098203 0.079923 60.146 3 3 Median 26541000 24279000 2261400 0 0 0 3859500 3062500 796950 1484100 1355700 128350 1770000 1770000 0 6502600 5826300 676310 12924000 12265000 659770 + 13033 783 13562 66264;66265;66266;66267;66268;66269;66270 66566;66567;66568;66569;66570;66571;66572 66571 7 HFCPNVPIILVGNKK DSLENIPEKWTPEVKHFCPNVPIILVGNKK HFCPNVPIILVGNKKDLRNDEHTRRELAKM K H F K K D 0 0 2 0 1 0 0 1 1 2 1 2 0 1 2 0 0 0 0 2 0 0 15 1 1734.9603 P61586;Q5JR08;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05 P61586 105 119 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 3 8.6846E-05 59.227 By MS/MS 2 0.88273 0.79357 4.014 2 Median NaN NaN NaN 0 0 Median 0.88273 0.79357 4.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8566200 4523300 4042800 0 0 0 8566200 4523300 4042800 0 0 0 0 0 0 0 0 0 0 0 0 13034 2559 13563 66271;66272 66573;66574;66575;66576 66574 4 HFDETVNR EQVLTLVNKRIGLYRHFDETVNRYKQSRDI KRIGLYRHFDETVNRYKQSRDISTLNSGKK R H F N R Y 0 1 1 1 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 8 0 1016.4676 P04843;B7Z4L4 P04843 495 502 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 3.0137E-14 182.13 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2261 1.1082 6.1958 5 Median 1.0365 0.99478 NaN 1 0 Median 1.2686 1.1113 6.7585 2 0 Median 1.0684 1.1317 NaN 1 0 Median 1.294 1.1082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34127000 15977000 18150000 7415100 3608100 3807000 23157000 10648000 12509000 3287200 1608500 1678700 267870 111970 155900 0 0 0 0 0 0 13035 1853 13564 66273;66274;66275;66276;66277 66577;66578;66579;66580;66581;66582 66580 6 HFDGSYSTFGEHR ILYLNTGYQRQLLYKHFDGSYSTFGEHRGN YKHFDGSYSTFGEHRGNSEGNTWLTAFVLK K H F H R G 0 1 0 1 0 0 1 2 2 0 0 0 0 2 0 2 1 0 1 0 0 0 13 0 1538.6539 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1024 1036 yes yes 3 3.1015E-05 95.094 By MS/MS By MS/MS 2 3 0.069092 0.058441 42.13 2 Median NaN NaN NaN 0 0 Median 0.069092 0.058441 42.13 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18057000 17727000 329680 7651000 7651000 0 10406000 10076000 329680 0 0 0 0 0 0 0 0 0 0 0 0 + 13036 734 13565 66278;66279;66280;66281;66282 66583;66584;66585;66586;66587 66583 5 HFDQFWSAAK FFPFIILDAINDRVRHFDQFWSAAKTKGFE NDRVRHFDQFWSAAKTKGFEVYLAEMSADN R H F A K T 2 0 0 1 0 1 0 0 1 0 0 1 0 2 0 1 0 1 0 0 0 0 10 0 1235.5724 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1940 1949 YLPM1 YLP motif-containing protein 1 yes no 2 0.00039606 78.264 By MS/MS By matching By MS/MS 1 1 1 0.91411 0.95649 15.864 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66849 0.73787 NaN 1 0 Median 1.1684 0.98397 NaN 1 0 Median 0.91411 0.95649 NaN 1 0 Median NaN NaN NaN 0 0 Median 18933000 9955000 8978200 0 0 0 0 0 0 11019000 5838200 5180800 252830 101040 151790 7661300 4015700 3645600 0 0 0 13037 2395 13566 66283;66284;66285 66588;66589;66590 66590 3 HFEALANR DIDKDNAKYVKKGTKHFEALANRAATTGHV YVKKGTKHFEALANRAATTGHVIDIYACAL K H F N R A 2 1 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 956.48281 F5H365;Q15436 F5H365 301 308 SEC23A Protein transport protein Sec23A yes no 2 0.0030838 101.69 By MS/MS By MS/MS By matching 1 1 1 1.1321 0.99215 3.315 3 Median 1.0149 1.0006 NaN 1 0 Median 1.1482 0.99215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1321 0.94122 NaN 1 0 Median 9916600 4773600 5143000 2218300 1127100 1091200 7383800 3493500 3890400 0 0 0 0 0 0 0 0 0 314450 153080 161380 13038 1029 13567 66286;66287;66288 66591;66592;66593;66594 66594 4 HFEATDILVSK KIEPIPGESPKMFGRHFEATDILVSKISRQ MFGRHFEATDILVSKISRQSIDALKDWFRD R H F S K I 1 0 0 1 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1258.6558 A0A087WUT6;O60841 A0A087WUT6 1175 1185 EIF5B Eukaryotic translation initiation factor 5B yes no 2 1.0734E-26 168.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1.1071 0.98131 30.107 6 Median 0.77132 0.74521 51.033 2 1 Median 1.1385 0.97698 NaN 1 1 Median 1.1646 1.2382 NaN 1 0 Median 1.0994 0.98566 NaN 1 0 Median 0.79931 0.83817 NaN 1 1 Median NaN NaN NaN 0 0 Median 105520000 45391000 60132000 37690000 16842000 20848000 4353200 1783800 2569400 43234000 20090000 23143000 15446000 4592500 10853000 4799400 2081800 2717600 0 0 0 13039 35 13568 66289;66290;66291;66292;66293;66294;66295 66595;66596;66597;66598;66599;66600;66601 66595 7 HFEELETIMDREK LLVETQMKKLEIKLRHFEELETIMDREKEA LRHFEELETIMDREKEALEQQRQQLLTERQ R H F E K E 0 1 0 1 0 0 4 0 1 1 1 1 1 1 0 0 1 0 0 0 0 0 13 1 1675.7876 Q92922 Q92922 913 925 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3 8.8997E-06 92.925 By MS/MS 1 0.96501 1.0931 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96501 1.0931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5839300 3167900 2671400 0 0 0 0 0 0 5839300 3167900 2671400 0 0 0 0 0 0 0 0 0 13040 3567 13569 66296 66602;66603 66602 2 HFEELETIMDRER LLVETQMKKLEIKLRHFEELETIMDREREA LRHFEELETIMDREREALEYQRQQLLADRQ R H F E R E 0 2 0 1 0 0 4 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 13 1 1703.7937 Q8TAQ2;F8VXC8 Q8TAQ2 905 917 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 3 5.391E-05 82.543 By MS/MS 1 0.87394 1.0629 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87394 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14886000 7440400 7445600 0 0 0 0 0 0 14886000 7440400 7445600 0 0 0 0 0 0 0 0 0 13041 3455 13570 66297 66604;66605 66605 2 HFEQAIER ALIAARHLSDSINQKHFEQAIERVIGGLEK SDSINQKHFEQAIERVIGGLEKKTQVLQPE K H F E R V 1 1 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 8 0 1028.5039 Q9Y4W6 Q9Y4W6 544 551 AFG3L2 AFG3-like protein 2 yes yes 2 0.01108 75.854 By MS/MS By MS/MS 1 1 0.687 0.63168 16.694 2 Median 0.72657 0.71083 NaN 1 1 Median 0.64957 0.56135 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11124000 6286800 4837000 2745600 1522000 1223700 8378100 4764800 3613300 0 0 0 0 0 0 0 0 0 0 0 0 13042 4449 13571 66298;66299 66606;66607 66607 2 HFESLEEELKK KDLNQEIEKLKTQIKHFESLEEELKKMKSK TQIKHFESLEEELKKMKSKNNDLQDNYLSE K H F K K M 0 0 0 0 0 0 4 0 1 0 2 2 0 1 0 1 0 0 0 0 0 0 11 1 1387.6983 Q86V48 Q86V48 304 314 LUZP1 Leucine zipper protein 1 yes yes 3 0.0012026 46.844 By matching By MS/MS 1 3 1.2659 1.2161 26.1 4 Median 0.82849 0.84416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5851 1.5056 17.553 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11691000 4818100 6872600 2493900 1255800 1238100 0 0 0 0 0 0 9196800 3562200 5634500 0 0 0 0 0 0 13043 3285 13572 66300;66301;66302;66303 66608;66609 66609 2 HFFINICHR NWEAVDGSQTETEKKHFFINICHRVLQEGK TETEKKHFFINICHRVLQEGKARGCPEDAA K H F H R V 0 1 1 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 9 0 1242.608 P11717 P11717 513 521 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3 0.00010861 133.12 By MS/MS By matching 2 1 1.4823 1.2148 7.7147 3 Plateau NaN NaN NaN 0 0 Median 1.3275 1.1271 10.605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3512 1.163 NaN 1 0 Median 11132000 4291500 6841000 0 0 0 9123700 3433800 5689900 0 0 0 0 0 0 0 0 0 2008700 857630 1151100 13044 1969 13573 66304;66305;66306 66610;66611 66611 2 HFFLQGEK HICEYTQKSGVSRARHFFLQGEKQFLLFTE SGVSRARHFFLQGEKQFLLFTERFHFYKRY R H F E K Q 0 0 0 0 0 1 1 1 1 0 1 1 0 2 0 0 0 0 0 0 0 0 8 0 1004.508 Q68CQ4 Q68CQ4 655 662 DIEXF Digestive organ expansion factor homolog yes yes 2 0.0062263 72.138 By MS/MS By MS/MS 1 1 1.1782 1.1465 19.638 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2079 1.3173 NaN 1 0 Median 1.1492 0.99784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4418100 1833500 2584600 0 0 0 0 0 0 2834400 1139000 1695400 1583700 694490 889170 0 0 0 0 0 0 13045 3123 13574 66307;66308 66612;66613;66614 66613 3 HFGAEYR REEGDLGPVYGFQWRHFGAEYRDMESDYSG PVYGFQWRHFGAEYRDMESDYSGQGVDQLQ R H F Y R D 1 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 878.4035 P04818 P04818 141 147 TYMS Thymidylate synthase yes yes 2 0.025249 54.525 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.341 1.1742 1.4623 5 Median 1.1991 1.1474 NaN 1 0 Median 1.385 1.1744 2.0492 2 0 Median 1.2167 1.1749 NaN 1 0 Median 1.4001 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10565000 4285000 6280400 3437700 1574000 1863700 5645600 2134800 3510800 660650 279960 380690 821430 296230 525200 0 0 0 0 0 0 13046 1852 13575 66309;66310;66311;66312;66313 66615;66616;66617;66618 66616 4 HFGSVVAQTIR TKDSNRARFLTMCNRHFGSVVAQTIRTQKT MCNRHFGSVVAQTIRTQKTDQFPLFLIIMG R H F I R T 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 0 2 0 0 11 0 1213.6568 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 431 441 FAF1 FAS-associated factor 1 yes no 2;3 0.00090196 85.533 By MS/MS 2 1.0426 1.0142 12.207 2 Median 1.0426 1.0142 12.207 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7216200 3421000 3795200 7216200 3421000 3795200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13047 575 13576 66314;66315 66619;66620 66620 2 HFHNTLEHLR LPNLESSEETEQINKHFHNTLEHLRLRRES EQINKHFHNTLEHLRLRRESPESEGPIYEG K H F L R L 0 1 1 0 0 0 1 0 3 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1302.6582 Q96QK1 Q96QK1 769 778 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2;3 6.9178E-06 144.77 By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1.0706 0.97504 26.355 7 Median 0.98528 0.97504 NaN 1 0 Median 1.1774 1.0189 13.261 2 0 Median NaN NaN NaN 0 0 Median 1.3742 1.1894 34.431 2 0 Median NaN NaN NaN 0 0 Median 0.97393 0.82264 37.819 2 0 Median 16833000 8050600 8782300 1920100 1028900 891280 12692000 5955500 6736700 0 0 0 1491700 680680 810980 0 0 0 728850 385530 343330 13048 3722 13577 66316;66317;66318;66319;66320;66321;66322 66621;66622;66623;66624;66625;66626 66625 6 HFHPLFEYFDYESR PVDTYNNILTVLKLKHFHPLFEYFDYESRK KHFHPLFEYFDYESRKSMSCYVLSNVLDYN K H F S R K 0 1 0 1 0 0 2 0 2 0 1 0 0 3 1 1 0 0 2 0 0 0 14 0 1885.8424 Q96QK1 Q96QK1 420 433 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 3 0.00075373 41.092 By MS/MS 1 0.69992 0.69244 NaN 1 Median 0.69992 0.69244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1989800 1351800 638050 1989800 1351800 638050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13049 3722 13578 66323 66627 66627 1 HFILDECDK LALARNKSLNLKHIKHFILDECDKMLEQLD NLKHIKHFILDECDKMLEQLDMRRDVQEIF K H F D K M 0 0 0 2 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1175.5281 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 192 200 DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.00091857 90.657 By MS/MS By MS/MS By MS/MS 1 1 1 1.1587 1.1032 0.98397 3 Median NaN NaN NaN 0 0 Median 1.3117 1.1158 NaN 1 0 Median 1.1074 1.0941 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1587 1.1032 NaN 1 1 Median NaN NaN NaN 0 0 Median 15379000 7216800 8162500 0 0 0 5509100 2457800 3051200 4021100 2049600 1971500 0 0 0 5849100 2709400 3139700 0 0 0 13050 2842 13579 66324;66325;66326 66628;66629;66630;66631;66632 66631 5 HFIQSLSK LSDKIPSEDHQVLYRHFIQSLSKFPHESAR DHQVLYRHFIQSLSKFPHESARLKKACEGM R H F S K F 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 958.52362 Q6PGP7;D6RCE2;H0Y964 Q6PGP7 207 214 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.0075003 66.799 By MS/MS By matching 1 1 1.3848 1.3928 42.109 2 Median 1.0933 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.754 1.8759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2888400 1263400 1625100 2309300 1034800 1274500 0 0 0 579120 228520 350610 0 0 0 0 0 0 0 0 0 13051 3169 13580 66327;66328 66633;66634 66633 2 HFLEAIENNK GEAEKKKPKTQIVCKHFLEAIENNKYGWFW QIVCKHFLEAIENNKYGWFWVCPGGGDICM K H F N K Y 1 0 2 0 0 0 2 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1213.6091 Q8WU90 Q8WU90 182 191 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 2 0.00021172 128.86 By matching By MS/MS 1 1 1.0067 0.91758 1.189 2 Median 0.95526 0.92533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.061 0.9099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8509600 3649900 4859800 1155700 484510 671220 0 0 0 0 0 0 7353900 3165400 4188500 0 0 0 0 0 0 13052 3485 13581 66329;66330 66635;66636 66635 2 HFLLEEDKPEEPTAHAFVSTLTR LVMNVYRDGAWGAFRHFLLEEDKPEEPTAH PEEPTAHAFVSTLTRGDLSSIRWVCSSLRH R H F T R G 2 1 0 1 0 0 4 0 2 0 3 1 0 2 2 1 3 0 0 1 0 0 23 1 2666.334 P49327;A0A0U1RQF0 P49327 1516 1538 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3;4 6.5596E-29 112.54 By MS/MS By MS/MS By matching 3 3 1 0.77133 0.82817 14.301 7 Median 0.68596 0.68228 11.423 3 0 Median 0.92403 0.88133 4.4194 3 0 Median 0.70421 0.84045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166990000 89502000 77488000 120810000 67877000 52933000 43185000 20158000 23027000 2994200 1467000 1527200 0 0 0 0 0 0 0 0 0 13053 2377 13582 66331;66332;66333;66334;66335;66336;66337 66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647;66648 66643 12 HFLPASR GLSQKPISSFADFERHFLPASRNRTVGATR SSFADFERHFLPASRNRTVGATRLNQRSSR R H F S R N 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 7 0 826.44497 Q14807;H3BRB3;H3BTH5 Q14807 224 230 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.047302 41.502 By MS/MS 1 0.96497 0.82857 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96497 0.82857 NaN 1 0 Median 769100 358370 410720 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 769100 358370 410720 13054 1228 13583 66338 66649 66649 1 HFLPEMLSK ANEAVNGVREMRAPKHFLPEMLSKVIILSL EMRAPKHFLPEMLSKVIILSLDRSDEDKEK K H F S K V 0 0 0 0 0 0 1 0 1 0 2 1 1 1 1 1 0 0 0 0 0 0 9 0 1100.5689 P78344;D3DQV9;H0Y3P2;E9PKF8 P78344 576 584 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0064101 69.825 By MS/MS 1 0.95888 0.93115 NaN 1 Median 0.95888 0.93115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7375100 3496600 3878400 7375100 3496600 3878400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13055 2639 13584 66339 66650 66650 1 HFLQQATQVNAWDR SLINKWSLELEDQERHFLQQATQVNAWDRT RHFLQQATQVNAWDRTLIENGEKITSLHRE R H F D R T 2 1 1 1 0 3 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 14 0 1712.8383 P37198 P37198 350 363 NUP62 Nuclear pore glycoprotein p62 yes yes 2;3 1.6638E-08 111.12 By matching By MS/MS By MS/MS 1 2 2 0.96487 0.97585 54.451 5 Median 1.0324 0.99555 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95203 0.9519 3.5137 2 0 Median 0.67538 0.56554 91.604 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68312000 34307000 34004000 2437700 1108100 1329600 0 0 0 57403000 28635000 28769000 8470500 4564400 3906200 0 0 0 0 0 0 13056 2267 13585 66340;66341;66342;66343;66344 66651;66652;66653;66654;66655;66656;66657 66654 7 HFLVPASR VVDCSCRLCRKKQHRHFLVPASRFTLLQGA CRKKQHRHFLVPASRFTLLQGAESIVTYRS R H F S R F 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 8 0 925.51339 P0DPI3;A0A0U1RR11;A0A0U1RRI6 P0DPI3 169 176 yes no 2 0.0029313 134.66 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 0.79016 0.81504 27.208 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76326 0.73409 NaN 1 0 Median 1.8111 1.5105 NaN 1 0 Median 0.75793 0.76217 8.1793 3 0 Median 1.0813 0.90281 NaN 1 0 Median 26711000 13892000 12819000 0 0 0 0 0 0 794690 419420 375270 2968500 1128900 1839600 21013000 11357000 9655300 1935300 986210 949110 13057 306 13586 66345;66346;66347;66348;66349;66350 66658;66659;66660;66661;66662;66663;66664;66665 66658 8 HFMLSVK CTAKTLYISDSDKRKHFMLSVKMFYGNSDD ISDSDKRKHFMLSVKMFYGNSDDIGVFLSK K H F V K M 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 1 0 0 7 0 860.45784 Q06330;D6R927;D6RB37;D6RBQ8;D6R946;D6RA45;D6RCM1 Q06330 138 144 RBPJ Recombining binding protein suppressor of hairless yes no 2 0.040961 44.611 By MS/MS By matching 1 1 1.2447 1.1671 7.2926 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2003 1.2289 NaN 1 0 Median 1.2907 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3995100 1853700 2141400 0 0 0 0 0 0 1617000 746810 870220 2378100 1106900 1271100 0 0 0 0 0 0 13058 2725 13587 66351;66352 66666 66666 1 HFNALGGWGELQNSVK LERHICGRLFGEKFRHFNALGGWGELQNSV FNALGGWGELQNSVKTFGETHPFTKLVVDL R H F V K T 1 0 2 0 0 1 1 3 1 0 2 1 0 1 0 1 0 1 0 1 0 0 16 0 1755.8693 P09960 P09960 340 355 LTA4H Leukotriene A-4 hydrolase yes yes 2;3 0.00044515 53.995 By MS/MS By matching 2 1 0.96826 0.90576 13.456 3 Median 1.0099 0.96344 18.35 2 0 Median NaN NaN NaN 0 0 Median 0.96826 0.90576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12930000 6746700 6183100 12203000 6372700 5829800 0 0 0 727320 374050 353270 0 0 0 0 0 0 0 0 0 13059 1924 13588 66353;66354;66355 66667;66668;66669 66667 2 HFNAPSHIR FNPFVTSDRSKNRKRHFNAPSHIRRKIMSS SKNRKRHFNAPSHIRRKIMSSPLSKELRQK R H F I R R 1 1 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5468 P61254;J3QRI7;J3QQQ9;J3QQV1;J3QRC4;J3KSS0 P61254 18 26 RPL26 60S ribosomal protein L26 yes no 2 0.0052544 72.485 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1 1.0652 0.97899 29.503 8 Median 1.0709 1.0102 NaN 1 0 Median 1.0595 0.90134 36.479 3 2 Median 1.0999 1.034 NaN 1 1 Median 1.6875 1.3763 NaN 1 0 Median 1.055 1.1141 NaN 1 0 Median 1.0287 0.91382 NaN 1 0 Median 19064000 11325000 7738800 3788500 1781900 2006600 11947000 7961400 3985900 1825800 880730 945120 248060 100510 147550 898050 464820 433230 356290 135880 220410 13060 2554 13589 66356;66357;66358;66359;66360;66361;66362;66363 66670;66671;66672;66673;66674;66675;66676;66677 66677 8 HFNELEHELQSR LGARCWSLYGRCYLRHFNELEHELQSRLNR YLRHFNELEHELQSRLNRGYKPASKYMNCF R H F S R L 0 1 1 0 0 1 3 0 2 0 2 0 0 1 0 1 0 0 0 0 0 0 12 0 1537.7274 Q7Z3C6 Q7Z3C6 342 353 ATG9A Autophagy-related protein 9A yes yes 3 3.8457E-05 88.552 By MS/MS By matching 2 1 1.1369 1.0504 19.862 3 Plateau NaN NaN NaN 0 0 Median 1.0513 0.87477 3.472 2 0 Median 1.137 1.2307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33633000 14383000 19250000 0 0 0 9636700 4458200 5178500 23997000 9924700 14072000 0 0 0 0 0 0 0 0 0 13061 3240 13590 66364;66365;66366 66678 66678 1 HFNSMSGPATLR PKTYGESMLYLDGQRHFNSMSGPATLRKDY GQRHFNSMSGPATLRKDYLVEP________ R H F L R K 1 1 1 0 0 0 0 1 1 0 1 0 1 1 1 2 1 0 0 0 0 0 12 0 1316.6296 Q9Y305 Q9Y305 421 432 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 1.9282E-15 150.61 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 1.0262 0.94809 25.618 12 Median 0.66826 0.63861 16.376 4 0 Median 1.2263 1.0602 2.9826 5 2 Median 0.89259 0.89411 0.087575 2 0 Median 1.3035 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63083000 35260000 27823000 25991000 17907000 8083000 21071000 9769800 11301000 9813100 5054800 4758300 6208100 2527700 3680400 0 0 0 0 0 0 13062 4400 13591;13592 66367;66368;66369;66370;66371;66372;66373;66374;66375;66376;66377;66378 66679;66680;66681;66682;66683;66684;66685;66686;66687;66688;66689;66690;66691;66692 66690 1965 14 HFNSMSGPATLRK PKTYGESMLYLDGQRHFNSMSGPATLRKDY QRHFNSMSGPATLRKDYLVEP_________ R H F R K D 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 2 1 0 0 0 0 0 13 1 1444.7245 Q9Y305 Q9Y305 421 433 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 3 0.00027735 58.32 By MS/MS By matching By matching 1 1 1 1.4397 1.3388 28.716 3 Median 0.82892 0.82969 NaN 1 0 Median 1.4732 1.3388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4397 1.3877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5129000 2731800 2397200 3381700 2011600 1370200 296050 128730 167320 0 0 0 1451200 591510 859710 0 0 0 0 0 0 13063 4400 13593 66379;66380;66381 66693;66694 66693 2 HFPNIDR ERRWTDENIDTVALKHFPNIDREKAMSRPI NIDTVALKHFPNIDREKAMSRPILYSNWLS K H F D R E 0 1 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 7 0 897.4457 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2857 2863 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0036346 108.24 By MS/MS By MS/MS 1 1 0.90488 0.82078 8.8251 2 Median 0.76162 0.77113 NaN 1 0 Median 1.0751 0.87363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12448000 5754400 6693600 2193700 1154200 1039500 10254000 4600300 5654100 0 0 0 0 0 0 0 0 0 0 0 0 13064 2865 13594 66382;66383 66695;66696 66696 2 HFQEYVK FPESQLVEFKQFSTKHFQEYVKRTIPEYVP EFKQFSTKHFQEYVKRTIPEYVPAFANTGG K H F V K R 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 0 7 0 949.46577 Q7Z7L1 Q7Z7L1 222 228 SLFN11 Schlafen family member 11 yes yes 2 0.016237 69.198 By MS/MS By matching 1 1 1.2799 1.2294 12.759 2 Median NaN NaN NaN 0 0 Median 1.5286 1.3455 NaN 1 0 Median 1.0717 1.1233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3370700 1312300 2058400 0 0 0 2943300 1117500 1825800 427420 194820 232600 0 0 0 0 0 0 0 0 0 13065 3262 13595 66384;66385 66697 66697 1 HFRPELEER ALGDGAAWPVQGLIRHFRPELEERMQRFAQ VQGLIRHFRPELEERMQRFAQQHQARQAAS R H F E R M 0 2 0 0 0 0 3 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 9 1 1211.6047 G3V0I5;P49821;B4DE93 G3V0I5 434 442 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 3 0.00053068 79.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.8817 0.85573 22.995 4 Median 0.78086 0.78854 NaN 1 1 Median 1.3644 1.2304 NaN 1 0 Median 0.67658 0.73255 NaN 1 0 Median 0.99557 0.92864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15286000 7239600 8046000 1939200 1189100 750060 4969300 1978100 2991200 3815100 2047800 1767300 4562100 2024600 2537500 0 0 0 0 0 0 13066 1100 13596 66386;66387;66388;66389;66390 66698;66699;66700;66701;66702;66703 66702 6 HFSAADASR PPPQVWQLISKVLARHFSAADASRVLEQLQ SKVLARHFSAADASRVLEQLQRDYERSLSR R H F S R V 3 1 0 1 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 9 0 960.44134 P11441;Q5HY81 P11441 106 114 UBL4A Ubiquitin-like protein 4A yes no 2 0.039605 33.797 By matching By MS/MS 1 1 1.1335 1.0317 3.4073 2 Median 1.0235 1.0071 NaN 1 0 Median 1.2554 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 526700 225250 301450 199050 79299 119750 327650 145950 181700 0 0 0 0 0 0 0 0 0 0 0 0 13067 1965 13597 66391;66392 66704 66704 1 HFSATLAYTK KFQHFNPVLETYIKKHFSATLAYTKLTKVL TYIKKHFSATLAYTKLTKVLKNYVDGAEKP K H F T K L 2 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 2 0 1 0 0 0 10 0 1137.5819 A0A096LNH6;Q14185 A0A096LNH6 726 735 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.0042775 53.775 By MS/MS By matching 1 1 0.96374 0.96974 22.313 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74303 0.8282 NaN 1 0 Median 1.25 1.1355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4382400 2370100 2012300 0 0 0 0 0 0 2907000 1732200 1174700 1475500 637880 837600 0 0 0 0 0 0 13068 140 13598 66393;66394 66705 66705 1 HFSGLEEAVYR PKAPGFAQMLKEGAKHFSGLEEAVYRNIQA EGAKHFSGLEEAVYRNIQACKELAQTTRTA K H F Y R N 1 1 0 0 0 0 2 1 1 0 1 0 0 1 0 1 0 0 1 1 0 0 11 0 1306.6306 P50990;H7C4C8 P50990 21 31 CCT8 T-complex protein 1 subunit theta yes no 2;3 3.097E-05 139.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 2 2 1.2468 1.1002 11.424 13 Median 1.1792 1.102 5.845 4 0 Median 1.1662 0.98028 5.5164 3 0 Median 1.3723 1.3849 1.3339 2 0 Median 1.3291 1.1408 3.649 2 0 Median NaN NaN NaN 0 0 Median 1.2648 1.0887 0.60315 2 0 Median 225910000 98045000 127870000 167440000 73148000 94293000 21806000 9803900 12002000 22065000 8839000 13226000 10229000 4328300 5900200 0 0 0 4372900 1925500 2447400 13069 2423 13599 66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407 66706;66707;66708;66709;66710;66711;66712;66713;66714;66715;66716;66717;66718;66719;66720;66721;66722 66709 17 HFSHLSTLER VLHWSHITHLFENDRHFSHLSTLEREMAFR FENDRHFSHLSTLEREMAFRTEMGLYYSYF R H F E R E 0 1 0 0 0 0 1 0 2 0 2 0 0 1 0 2 1 0 0 0 0 0 10 0 1225.6204 A0A1B0GW05;Q2PZI1 A0A1B0GW05 120 129 DPY19L1 Probable C-mannosyltransferase DPY19L1 yes no 3 0.00010549 79.16 By MS/MS By MS/MS By matching 1 1 1 1.2515 1.1325 14.533 3 Median 1.0655 1.0661 NaN 1 0 Median 1.3884 1.1325 NaN 1 0 Median 1.2515 1.4055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11330000 4843700 6486300 1093400 556680 536740 9325400 3807300 5518100 911230 479780 431450 0 0 0 0 0 0 0 0 0 13070 326 13600 66408;66409;66410 66723;66724;66725 66724 3 HFSQGSALILHQR NPSRKKQHICDECGKHFSQGSALILHQRIH GKHFSQGSALILHQRIHSGEKPYGCVECGK K H F Q R I 1 1 0 0 0 2 0 1 2 1 2 0 0 1 0 2 0 0 0 0 0 0 13 0 1492.7899 P17028 P17028 259 271 ZNF24 Zinc finger protein 24 yes yes 3 1.8834E-07 127.02 By MS/MS By MS/MS 1 1 1.2957 1.1945 10.768 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3061 1.289 NaN 1 0 Median 1.2854 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24404000 10491000 13914000 0 0 0 0 0 0 11065000 4651600 6413600 13339000 5839000 7499900 0 0 0 0 0 0 13071 2034 13601 66411;66412 66726;66727;66728;66729 66727 4 HFSSDAVPHPR PLYHGFKEVEENWSKHFSSDAVPHPRFYCV NWSKHFSSDAVPHPRFYCVLSPEASEDDLN K H F P R F 1 1 0 1 0 0 0 0 2 0 0 0 0 1 2 2 0 0 0 1 0 0 11 0 1248.6 Q5T4S7 Q5T4S7 921 931 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 0.001054 48.998 By matching By MS/MS By matching 1 2 1 0.94104 0.81757 21.844 4 Median 0.71439 0.72194 NaN 1 0 Median 0.94104 0.81198 18.563 2 0 Median NaN NaN NaN 0 0 Median 1.2962 1.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7121500 3880800 3240700 1940000 1191600 748450 5065500 2632800 2432700 0 0 0 115930 56322 59611 0 0 0 0 0 0 13072 3089 13602 66413;66414;66415;66416 66730 66730 1 HFSVEGQLEFR YKSLTNDWEDHLAVKHFSVEGQLEFRALLF LAVKHFSVEGQLEFRALLFVPRRAPFDLFE K H F F R A 0 1 0 0 0 1 2 1 1 0 1 0 0 2 0 1 0 0 0 1 0 0 11 0 1347.6571 P07900;Q14568;Q58FG1;P08238;Q58FF7 P07900 328 338 HSP90AA1;HSP90AA2P;HSP90AA4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2;3 3.0713E-40 217.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 8 2 2 1 1 1.1474 1.0043 29.324 19 Median 1.2122 1.1446 37.017 5 0 Median 1.1267 0.98 16.989 8 0 Median 1.1108 1.1772 4.206 2 0 Median 1.1735 1.0007 0.51005 2 0 Median 1.8674 1.9677 NaN 1 0 Median 1.0668 0.87789 NaN 1 0 Median 640520000 285010000 355510000 425500000 187170000 238330000 165980000 75344000 90633000 42087000 19363000 22724000 2495000 1160400 1334600 4009300 1755500 2253800 448890 216820 232070 13073 1894;1899 13603 66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435 66731;66732;66733;66734;66735;66736;66737;66738;66739;66740;66741;66742;66743;66744;66745;66746;66747;66748;66749;66750;66751;66752;66753;66754;66755;66756;66757;66758;66759;66760;66761;66762 66734 32 HFTEDIQTR KVKIADLGNACWVHKHFTEDIQTRQYRSLE ACWVHKHFTEDIQTRQYRSLEVLIGSGYNT K H F T R Q 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 9 0 1145.5465 H3BLV9;Q96SB4;H7C2I2;H7C521;H7C5L6;A8MPY5;E7ETV6;Q9UPE1;P78362 H3BLV9 523 531 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal no no 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 2 1.1603 0.95808 19.785 7 Median NaN NaN NaN 0 0 Median 1.1216 0.97061 14.525 2 0 Median 0.78288 0.82925 NaN 1 0 Median 1.3074 1.1229 NaN 1 1 Median 1.1871 1.2555 NaN 1 0 Median 0.96313 0.82171 21.714 2 0 Median 9545200 4616900 4928300 0 0 0 5209500 2802500 2407000 1784300 816180 968100 932130 363900 568230 1086600 409890 676700 532660 224460 308200 13074 1207 13604 66436;66437;66438;66439;66440;66441;66442;66443 66763;66764;66765;66766;66767 66765 5 HFTGGVMR VRKCNGQPVPFQQPKHFTGGVMRWYQVEGM VPFQQPKHFTGGVMRWYQVEGMEWLRMLWE K H F M R W 0 1 0 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 1 0 0 8 0 903.43851 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 93 100 HELLS Lymphoid-specific helicase yes no 2 0.028842 40.103 By MS/MS By matching By MS/MS 1 1 1 1.0421 1.1063 15.827 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0421 1.1063 NaN 1 0 Median 0.96478 0.81277 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2241 1.0089 NaN 1 0 Median 1517200 676440 840740 0 0 0 0 0 0 776840 340650 436190 315370 137390 177970 0 0 0 424970 198390 226580 13075 211 13605 66444;66445;66446 66768;66769 66768 2 HFTIDDFEIGRPLGK KVMENSSGTPDILTRHFTIDDFEIGRPLGK HFTIDDFEIGRPLGKGKFGNVYLAREKKSH R H F G K G 0 1 0 2 0 0 1 2 1 2 1 1 0 2 1 0 1 0 0 0 0 0 15 1 1743.8944 Q96GD4;J3QLN8;J3KT86;J3QR41;J3KTD6;J3KRJ2;J3KRF8 Q96GD4 71 85 AURKB Aurora kinase B yes no 3 0.031238 18.102 By MS/MS 2 1.0077 1.1283 1.9181 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0077 1.1283 1.9181 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2432800 1260600 1172200 0 0 0 0 0 0 2432800 1260600 1172200 0 0 0 0 0 0 0 0 0 13076 3656 13606 66447;66448 66770 66770 1 HFTILDAPGHK KTVEVGRAYFETEKKHFTILDAPGHKSFVP TEKKHFTILDAPGHKSFVPNMIGGASQADL K H F H K S 1 0 0 1 0 0 0 1 2 1 1 1 0 1 1 0 1 0 0 0 0 0 11 0 1234.6459 P15170;H3BR35;H3BSV8;Q8IYD1 P15170 153 163 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 3 3.7552E-05 113.93 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 4 0.95601 0.84983 26.069 14 Median 1.1001 0.95056 28.756 4 1 Linear 0.8503 0.72739 23.253 4 0 Median 0.74932 0.76147 51.117 2 1 Median 1.0548 0.90066 11.156 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79690000 38885000 40805000 22744000 11065000 11679000 20318000 10246000 10072000 19794000 9198200 10596000 16834000 8376200 8458000 0 0 0 0 0 0 13077 2016 13607 66449;66450;66451;66452;66453;66454;66455;66456;66457;66458;66459;66460;66461;66462 66771;66772;66773;66774;66775;66776;66777;66778;66779;66780;66781;66782;66783;66784;66785;66786;66787;66788;66789 66780 18 HFVALSTNTTK EWFLQAAKDPSAVAKHFVALSTNTTKVKEF AVAKHFVALSTNTTKVKEFGIDPQNMFEFW K H F T K V 1 0 1 0 0 0 0 0 1 0 1 1 0 1 0 1 3 0 0 1 0 0 11 0 1217.6404 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90 P06744 242 252 GPI Glucose-6-phosphate isomerase yes no 2;3 4.5658E-131 291.35 By MS/MS By MS/MS By matching By MS/MS By matching 5 4 1 2 1 1.0956 1.0107 16.403 13 Median 1.091 1.0316 11.455 5 1 Median 1.0975 0.92474 9.8737 4 0 Median 1.124 1.1137 NaN 1 0 Median 0.87082 0.75535 21.679 2 0 Median NaN NaN NaN 0 0 Median 1.214 1.0241 NaN 1 0 Median 263150000 124030000 139120000 159010000 75952000 83057000 93321000 43141000 50181000 6902900 2961000 3941900 2641900 1380800 1261100 0 0 0 1276200 596750 679490 13078 1875 13608 66463;66464;66465;66466;66467;66468;66469;66470;66471;66472;66473;66474;66475 66790;66791;66792;66793;66794;66795;66796;66797;66798;66799;66800;66801;66802;66803;66804;66805;66806;66807;66808;66809;66810;66811 66803 22 HFVDSHHQKPVNAIIEHVR SHTIRDLKYTIENPRHFVDSHHQKPVNAII SHHQKPVNAIIEHVRDGSVVRALLLPDYYL R H F V R D 1 1 1 1 0 1 1 0 4 2 0 1 0 1 1 1 0 0 0 3 0 0 19 1 2262.177 Q7KZF4 Q7KZF4 185 203 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3;4;5 1.0289E-18 141.07 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1.0736 1.0663 6.7884 9 Median 0.98113 1.0213 9.7925 3 0 Median 1.0959 1.0203 2.741 2 0 Median 0.98165 1.1136 2.7617 2 1 Median 1.165 1.1195 6.8961 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60091000 26621000 33470000 11259000 4986200 6272900 18111000 7576300 10535000 14653000 7104900 7548400 16067000 6953200 9114000 0 0 0 0 0 0 13079 3214 13609 66476;66477;66478;66479;66480;66481;66482;66483;66484 66812;66813;66814;66815;66816;66817;66818;66819;66820;66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831;66832;66833 66821 21 HFVGILNK NNFGTGALKCNTLCRHFVGILNKTSGQMEV KCNTLCRHFVGILNKTSGQMEVYDAELFNM R H F N K T 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 926.53379 Q9GZS1;E7EX70 Q9GZS1 87 94 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 2 2.4106E-09 145.87 By MS/MS By MS/MS By MS/MS 1 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13080 3913 13610 66485;66486;66487;66488 66834;66835;66836;66837 66837 4 HFVGMLPEK ILVGDVGVTITDPFKHFVGMLPEKDCRYAL ITDPFKHFVGMLPEKDCRYALYDASFETKE K H F E K D 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 0 0 0 0 1 0 0 9 0 1056.5426 P60981;F6RFD5 P60981 70 78 DSTN Destrin yes no 2 0.00059517 111.01 By MS/MS By MS/MS By MS/MS 2 1 1 1.0027 0.90128 23.653 4 Median 0.92939 0.89826 3.9433 2 0 Median 1.0272 0.87944 NaN 1 1 Median 1.4506 1.4277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27447000 12817000 14630000 14349000 6807400 7541800 10350000 4996500 5353300 2747700 1013100 1734600 0 0 0 0 0 0 0 0 0 13081 2533 13611 66489;66490;66491;66492 66838;66839;66840;66841 66839 4 HFVGMLPEKDCR ILVGDVGVTITDPFKHFVGMLPEKDCRYAL PFKHFVGMLPEKDCRYALYDASFETKESRK K H F C R Y 0 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 0 0 0 1 0 0 12 1 1487.7013 P60981;F6RFD5 P60981 70 81 DSTN Destrin yes no 3 0.00018189 74.944 By MS/MS 1 1.162 1.0251 NaN 1 Median NaN NaN NaN 0 0 Median 1.162 1.0251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1307100 724440 582660 0 0 0 1307100 724440 582660 0 0 0 0 0 0 0 0 0 0 0 0 13082 2533 13612 66493 66842;66843 66843 2 HFVLDECDK LALVRNRSFSLKNVKHFVLDECDKMLEQLD SLKNVKHFVLDECDKMLEQLDMRRDVQEIF K H F D K M 0 0 0 2 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1161.5125 O00148;K7EQN7;K7EPJ3;A0A0D9SEM9 O00148 191 199 DDX39A ATP-dependent RNA helicase DDX39A no no 2 0.001584 79.906 By MS/MS 1 1.1758 1.0122 NaN 1 Median NaN NaN NaN 0 0 Median 1.1758 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807100 923260 883820 0 0 0 1807100 923260 883820 0 0 0 0 0 0 0 0 0 0 0 0 13083 1441;260 13613 66494 66844;66845 66845 2 HFYTFTNEHHR PVYKRIRDVTNNQEKHFYTFTNEHHRETYV NQEKHFYTFTNEHHRETYVEQEQGENANDR K H F H R E 0 1 1 0 0 0 1 0 3 0 0 0 0 2 0 0 2 0 1 0 0 0 11 0 1487.6694 Q9Y2L1;F2Z2C0 Q9Y2L1 119 129 DIS3 Exosome complex exonuclease RRP44 yes no 3 4.1008E-06 156.64 By MS/MS By MS/MS By MS/MS 1 1 1 1.1258 1.0553 13.136 3 Median NaN NaN NaN 0 0 Median 1.1055 0.92928 NaN 1 0 Median 1.1258 1.2084 NaN 1 0 Median 1.2382 1.0553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11140000 4563600 6576100 0 0 0 6507500 2379100 4128400 3409500 1645100 1764500 1222700 539470 683240 0 0 0 0 0 0 13084 4384 13614 66495;66496;66497 66846;66847;66848;66849;66850 66848 5 HFYWYLTNEGIQYLR SLKSRGYVKEQFAWRHFYWYLTNEGIQYLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR R H F L R D 0 1 1 0 0 1 1 1 1 1 2 0 0 1 0 0 1 1 3 0 0 0 15 0 2001.9737 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;A0A1W2PQS6;S4R435 P46783 66 80 RPS10;RPS10-NUDT3 40S ribosomal protein S10 no no 3 0.00014533 48.625 By MS/MS By matching 1 2 1.173 1.2411 17.858 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.173 1.2411 NaN 1 0 Median 1.1452 0.91927 6.0787 2 0 Median 4470500 1991300 2479100 0 0 0 0 0 0 0 0 0 0 0 0 3681200 1637900 2043400 789230 353480 435750 13085 2346;345 13615 66498;66499;66500 66851;66852 66851 2 HGAEVIDTPVFELK VREKVFDVIIRCFKRHGAEVIDTPVFELKE RHGAEVIDTPVFELKETLMGKYGEDSKLIY R H G L K E 1 0 0 1 0 0 2 1 1 1 1 1 0 1 1 0 1 0 0 2 0 0 14 0 1553.809 P12081;B3KWE1;B4DDD8;E7ETE2 P12081 87 100 HARS Histidine--tRNA ligase, cytoplasmic yes no 2;3 1.2278E-05 127.42 By matching By MS/MS By MS/MS 1 3 1 1.0144 0.97151 11.347 5 Median 1.2685 1.2105 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98763 0.97151 3.5391 3 0 Median 1.0427 0.90162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19955000 9334500 10621000 3357300 1622000 1735300 0 0 0 15613000 7241500 8371700 984770 471020 513750 0 0 0 0 0 0 13086 1975 13616 66501;66502;66503;66504;66505 66853;66854;66855;66856;66857 66853 5 HGAGAEISTVHPEQYAK YDAKKKAAHAAKTVKHGAGAEISTVHPEQY AGAEISTVHPEQYAKRFLDFITNIFA____ K H G A K R 3 0 0 0 0 1 2 2 2 1 0 1 0 0 1 1 1 0 1 1 0 0 17 0 1793.8697 Q8TBX8 Q8TBX8 394 410 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes yes 3 7.4632E-08 93.106 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.9588 0.81783 10.903 5 Median 0.82766 0.78441 NaN 1 1 Median 0.9516 0.8119 1.0292 2 2 Median 1.0083 0.98518 NaN 1 0 Median 1.0795 0.96949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26054000 13370000 12685000 4225200 2289800 1935400 6947500 3439600 3507900 6995600 3572500 3423100 7885800 4067600 3818200 0 0 0 0 0 0 13087 3462 13617 66506;66507;66508;66509;66510 66858;66859;66860;66861;66862;66863;66864 66864 7 HGAGAEISTVNPEQYSK YDTKKKAAHAAKTVKHGAGAEISTVNPEQY AGAEISTVNPEQYSKRFNEFMSNILT____ K H G S K R 2 0 1 0 0 1 2 2 1 1 0 1 0 0 1 2 1 0 1 1 0 0 17 0 1786.8486 P78356 P78356 389 405 PIP4K2B Phosphatidylinositol 5-phosphate 4-kinase type-2 beta no no 3 9.8996E-05 49.463 By matching By MS/MS By MS/MS 1 1 2 1.1081 0.95753 13.335 3 Median NaN NaN NaN 0 0 Median 1.1081 0.95753 NaN 1 0 Median 0.89255 0.88048 NaN 1 0 Median 1.2762 1.1433 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11241000 4714300 6527100 0 0 0 1562400 884550 677860 4684600 2345100 2339500 4994300 1484700 3509700 0 0 0 0 0 0 13088 2643 13618 66511;66512;66513;66514 66865;66866;66867;66868 66866 4 HGANPDLRDEDGKTPLDK AACFGRPQVAKTLLRHGANPDLRDEDGKTP NPDLRDEDGKTPLDKARERGHSEVVAILQS R H G D K A 1 1 1 4 0 0 1 2 1 0 2 2 0 0 2 0 1 0 0 0 0 0 18 2 1976.9552 A0A087X2H1;Q9ULT8;G3V4V5 A0A087X2H1 449 466 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 4 0.00082298 32.366 By matching By MS/MS 1 1 0.60018 0.63693 47.894 2 Median 0.8454 0.89365 NaN 1 0 Median 0.42609 0.45395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4129400 2479600 1649900 1305600 765160 540440 2823800 1714400 1109400 0 0 0 0 0 0 0 0 0 0 0 0 13089 137 13619 66515;66516 66869 66869 1 HGAPSPSHPISAPQAAAAAALR PQGADSTMLATKTVKHGAPSPSHPISAPQA HPISAPQAAAAAALRRQMASQAPAVNTLTE K H G L R R 8 1 0 0 0 1 0 1 2 1 1 0 0 0 4 3 0 0 0 0 0 0 22 0 2077.0817 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1065 1086 NUP214 Nuclear pore complex protein Nup214 yes no 3;4 2.6524E-26 113.86 By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 0.66067 0.5982 37.332 7 Median 0.54729 0.55285 NaN 1 0 Median 0.66067 0.56132 NaN 1 1 Median 0.54885 0.5982 58.396 3 2 Median 0.76577 0.66258 8.0846 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52949000 30925000 22024000 3269900 2347200 922750 3309000 1824300 1484700 41874000 24197000 17677000 4495800 2556700 1939100 0 0 0 0 0 0 13090 467 13620 66517;66518;66519;66520;66521;66522;66523 66870;66871;66872;66873;66874;66875;66876;66877 66872 8 HGDEIITSTTSNYETQTFSSK EQSQLTATQTRTVNKHGDEIITSTTSNYET TSTTSNYETQTFSSKTEWRVRAISAANLHL K H G S K T 0 0 1 1 0 1 2 1 1 2 0 1 0 1 0 4 5 0 1 0 0 0 21 0 2345.0659 Q6P2Q9 Q6P2Q9 2050 2070 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 1.7681E-26 149.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 4 2 1 1.1779 1.156 12.279 12 Median 1.1437 1.1205 27.694 2 1 Median 1.2897 1.1433 NaN 1 0 Median 1.0132 1.1195 12.393 2 0 Median 1.3061 1.2052 14.53 4 0 Median 1.0995 1.142 3.7575 2 0 Median 1.2385 1.0284 NaN 1 0 Median 138820000 65909000 72914000 16347000 7003700 9343400 6429500 2812200 3617200 83929000 42278000 41650000 14739000 6088400 8650400 16323000 7319500 9003100 1056600 406750 649860 13091 3157 13621 66524;66525;66526;66527;66528;66529;66530;66531;66532;66533;66534;66535 66878;66879;66880;66881;66882;66883;66884;66885;66886;66887 66879 10 HGDEIYIAPSGVQK HLGWVTGTGGGISLKHGDEIYIAPSGVQKE KHGDEIYIAPSGVQKERIQPEDMFVCDINE K H G Q K E 1 0 0 1 0 1 1 2 1 2 0 1 0 0 1 1 0 0 1 1 0 0 14 0 1512.7573 Q96GX9 Q96GX9 52 65 APIP Methylthioribulose-1-phosphate dehydratase yes yes 2;3 2.5292E-08 107.03 By matching By MS/MS 1 2 0.81327 0.68293 9.9462 3 Median 0.66932 0.64615 NaN 1 0 Median 0.87093 0.73164 9.7425 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15132000 7688100 7443400 4018400 2300400 1718000 11113000 5387700 5725400 0 0 0 0 0 0 0 0 0 0 0 0 13092 3663 13622 66536;66537;66538 66888;66889 66889 2 HGDGTTLDIMLK LSADLRSPVYLTVLKHGDGTTLDIMLKLHK VLKHGDGTTLDIMLKLHKQADMQEEKNRIE K H G L K L 0 0 0 2 0 0 0 2 1 1 2 1 1 0 0 0 2 0 0 0 0 0 12 0 1299.6493 E9PLK3;P55786 E9PLK3 750 761 NPEPPS Puromycin-sensitive aminopeptidase yes no 2;3 0.00015407 74.962 By MS/MS By MS/MS 1 1 1.0236 0.94474 4.6599 2 Median 1.0025 0.97639 NaN 1 0 Median 1.0452 0.91412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10295000 3970700 6324100 5709100 1983100 3725900 4585800 1987500 2598200 0 0 0 0 0 0 0 0 0 0 0 0 13093 960 13623 66539;66540 66890;66891 66890 2 HGDLLFLFPSSLAGPSSEMETSVPPGFK ITASSNKSLNLLKIKHGDLLFLFPSSLAGP GPSSEMETSVPPGFKVFGAPNVVEDEIDQY K H G F K V 1 0 0 1 0 0 2 3 1 0 4 1 1 3 4 5 1 0 0 1 0 0 28 0 2946.4473 Q8TAT6;I3L4U9;A0A0D9SFI9 Q8TAT6 71 98 NPLOC4 Nuclear protein localization protein 4 homolog yes no 3 0.039115 10.903 By MS/MS 1 0.54232 0.525 NaN 1 Median 0.54232 0.525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1387200 879150 508100 1387200 879150 508100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13094 3456 13624 66541 66892;66893 66892 2 HGDLPDIQIK KMKQDAQVVLYRSYRHGDLPDIQIKHSSLI YRSYRHGDLPDIQIKHSSLITPLQAVAQRD R H G I K H 0 0 0 2 0 1 0 1 1 2 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1134.6033 P78527 P78527 2777 2786 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.3337E-16 190.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1.0653 1.0436 19.251 8 Median 0.89942 0.90321 NaN 1 0 Median 1.2322 1.099 1.0511 2 0 Median 0.71544 0.77366 7.6466 2 0 Median 1.2988 1.2387 4.353 2 1 Median 0.95357 0.99832 NaN 1 1 Median NaN NaN NaN 0 0 Median 318300000 161650000 156650000 49277000 24614000 24663000 81992000 36890000 45102000 147770000 81307000 66462000 26926000 11983000 14942000 12340000 6855000 5484600 0 0 0 13095 2647 13625 66542;66543;66544;66545;66546;66547;66548;66549 66894;66895;66896;66897;66898;66899;66900;66901;66902;66903;66904;66905;66906;66907;66908;66909 66903 16 HGEAQVKIWR YGGLTGLNKAETAAKHGEAQVKIWRRSYDV ETAAKHGEAQVKIWRRSYDVPPPPMEPDHP K H G W R R 1 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 10 1 1222.6571 P18669;Q8N0Y7 P18669 107 116 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 3 0.061489 24.465 By MS/MS 1 1.6071 1.4997 NaN 1 Median NaN NaN NaN 0 0 Median 1.6071 1.4997 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2327700 532020 1795700 0 0 0 2327700 532020 1795700 0 0 0 0 0 0 0 0 0 0 0 0 13096 2060 13626 66550 66910 66910 1 HGEIDYEAIVK ARLDILKIHAGPITKHGEIDYEAIVKLSDG PITKHGEIDYEAIVKLSDGFNGADLRNVCT K H G V K L 1 0 0 1 0 0 2 1 1 2 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1272.635 A0A087X2I1;P62333 A0A087X2I1 337 347 PSMC6 26S protease regulatory subunit 10B yes no 2 1.5447E-06 163.99 By MS/MS By MS/MS By MS/MS 1 1 1 1.1111 1.027 13.789 3 Median 1.1111 1.027 NaN 1 0 Median 1.0585 0.90165 NaN 1 0 Median 1.1431 1.1878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48615000 23757000 24858000 15559000 7592800 7966000 24634000 12293000 12341000 8422000 3871100 4550900 0 0 0 0 0 0 0 0 0 13097 138 13627 66551;66552;66553 66911;66912;66913;66914 66911 4 HGEPEEDIVGLQAFQER AEKKDPQGLGLHFYKHGEPEEDIVGLQAFQ EPEEDIVGLQAFQERLNSYKCITDTLQELV K H G E R L 1 1 0 1 0 2 4 2 1 1 1 0 0 1 1 0 0 0 0 1 0 0 17 0 1952.9228 O75694;E9PF10 O75694 952 968 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 3.1604E-14 111.39 By MS/MS By matching 3 1 0.80831 0.87335 12.64 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74558 0.82014 13.917 3 2 Median 1.0773 0.93002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24177000 12731000 11446000 0 0 0 0 0 0 23722000 12535000 11187000 454410 195880 258520 0 0 0 0 0 0 13098 1692 13628 66554;66555;66556;66557 66915;66916;66917;66918;66919;66920 66920 6 HGESAWNLENR ______________________________ VLIRHGESAWNLENRFSGWYDADLSPAGHE R H G N R F 1 1 2 0 0 0 2 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 11 0 1311.5956 P18669 P18669 11 21 PGAM1 Phosphoglycerate mutase 1 yes yes 2;3 5.0366E-152 305.55 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 1.0883 1.0307 20.145 12 Median 1.0894 1.0468 2.1662 4 0 Median 0.9691 0.8182 24.752 5 0 Median 1.1386 1.0925 8.207 2 0 Median 1.1694 0.9665 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 244890000 111630000 133260000 146370000 66978000 79391000 81610000 37337000 44273000 15714000 6701200 9012400 1200800 618440 582320 0 0 0 0 0 0 13099 2060 13629 66558;66559;66560;66561;66562;66563;66564;66565;66566;66567;66568;66569 66921;66922;66923;66924;66925;66926;66927;66928;66929;66930;66931;66932;66933 66921 13 HGEVCPAGWKPGSDTIKPDVQK DETLRLVQAFQFTDKHGEVCPAGWKPGSDT GWKPGSDTIKPDVQKSKEYFSKQK______ K H G Q K S 1 0 0 2 1 1 1 3 1 1 0 3 0 0 3 1 1 1 0 2 0 0 22 2 2405.1798 Q06830;A0A0A0MRQ5 Q06830 169 190 PRDX1 Peroxiredoxin-1 yes no 3;4;5 5.9113E-15 95.034 By MS/MS By MS/MS 1 3 0.87002 0.85137 26.08 4 Median 1.2344 1.3036 NaN 1 1 Median 0.81694 0.79942 11.879 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143720000 75779000 67938000 14776000 7350000 7425600 128940000 68429000 60513000 0 0 0 0 0 0 0 0 0 0 0 0 13100 2728 13630 66570;66571;66572;66573 66934;66935;66936;66937;66938;66939;66940;66941 66941 8 HGEVCPAGWKPGSETIIPDPAGK DETLRLVQAFQYTDKHGEVCPAGWKPGSET WKPGSETIIPDPAGKLKYFDKLN_______ K H G G K L 2 0 0 1 1 0 2 4 1 2 0 2 0 0 4 1 1 1 0 1 0 0 23 1 2402.1689 Q13162 Q13162 241 263 PRDX4 Peroxiredoxin-4 yes yes 3 4.2324E-05 35.703 By MS/MS 1 0.73893 0.67611 NaN 1 Median NaN NaN NaN 0 0 Median 0.73893 0.67611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2893700 1657700 1236000 0 0 0 2893700 1657700 1236000 0 0 0 0 0 0 0 0 0 0 0 0 13101 2793 13631 66574 66942;66943 66942 2 HGFEAASIK ADWTAKKLVWIPSERHGFEAASIKEERGDE WIPSERHGFEAASIKEERGDEVMVELAENG R H G I K E 2 0 0 0 0 0 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 9 0 958.48723 P35580;E7ERA5 P35580 43 51 MYH10 Myosin-10 yes no 2 0.00089695 91.853 By matching By MS/MS 1 1 0.95965 0.89664 22.126 2 Median 0.77989 0.76678 NaN 1 0 Median 1.1809 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4097200 1907300 2189900 613240 349560 263680 3484000 1557800 1926200 0 0 0 0 0 0 0 0 0 0 0 0 13102 2245 13632 66575;66576 66944;66945 66944 2 HGFEAASIKEER ADWTAKKLVWIPSERHGFEAASIKEERGDE SERHGFEAASIKEERGDEVMVELAENGKKA R H G E R G 2 1 0 0 0 0 3 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 12 1 1372.6735 P35580;E7ERA5 P35580 43 54 MYH10 Myosin-10 yes no 2;3 4.7729E-05 88.021 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 2 0.97496 1.0575 27.653 7 Median 0.85793 0.87343 NaN 1 0 Median 1.2098 1.1365 7.0394 3 1 Median 0.52899 0.63015 NaN 1 0 Median 1.2039 1.1622 NaN 1 0 Median 0.57557 0.65345 NaN 1 1 Median NaN NaN NaN 0 0 Median 19467000 9062300 10405000 2632200 1244400 1387800 11962000 5202200 6760200 2449100 1429700 1019400 646280 307560 338720 1777000 878500 898480 0 0 0 13103 2245 13633 66577;66578;66579;66580;66581;66582;66583;66584 66946;66947;66948;66949;66950;66951;66952;66953;66954;66955 66947 10 HGFLEEFITPIVK LLINFIHHNWPSLLKHGFLEEFITPIVKAS LKHGFLEEFITPIVKASKNKQELSFYSIPE K H G V K A 0 0 0 0 0 0 2 1 1 2 1 1 0 2 1 0 1 0 0 1 0 0 13 0 1528.829 Q02880;E9PCY5 Q02880 588 600 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 4.8625E-07 110.87 By MS/MS By matching 3 1 0.81283 0.87285 16.018 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79431 0.8824 19.319 3 0 Median NaN NaN NaN 0 0 Median 0.83178 0.8634 NaN 1 0 Median NaN NaN NaN 0 0 Median 9105700 5173500 3932100 0 0 0 0 0 0 8832400 5020400 3812000 0 0 0 273260 153080 120180 0 0 0 13104 2704 13634 66585;66586;66587;66588 66956;66957;66958 66957 3 HGFLILSR QEPSTTPEADDDGRRHGFLILSREDSTMIL ADDDGRRHGFLILSREDSTMILQTGQEIME R H G S R E 0 1 0 0 0 0 0 1 1 1 2 0 0 1 0 1 0 0 0 0 0 0 8 0 941.54469 Q10570 Q10570 572 579 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 1.9183E-09 147.69 By MS/MS By MS/MS By MS/MS 1 3 2 0.9302 0.96183 22.138 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9302 0.99245 8.6945 2 1 Median 0.91333 0.79932 30.437 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63848000 31234000 32614000 0 0 0 0 0 0 57860000 28401000 29459000 5987600 2832700 3154900 0 0 0 0 0 0 13105 2753 13635 66589;66590;66591;66592;66593;66594 66959;66960;66961;66962;66963;66964;66965;66966;66967 66961 9 HGFRQEYLDTLYR STRDGRMLFDYLADKHGFRQEYLDTLYRYA DKHGFRQEYLDTLYRYAKFQYECGNYSGAA K H G Y R Y 0 2 0 1 0 1 1 1 1 0 2 0 0 1 0 0 1 0 2 0 0 0 13 1 1696.8322 P60228;E5RGA2;H0YBR5 P60228 121 133 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 3 2.7605E-05 129.34 By MS/MS 1 1.2267 1.2388 NaN 1 Median 1.2267 1.2388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11138000 4990200 6147900 11138000 4990200 6147900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13106 2524 13636 66595 66968;66969 66969 2 HGGGGGGFGGGGFGSR GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS GGGGGGFGGGGFGSRSLVGLGGTKSISISV R H G S R S 0 1 0 0 0 0 0 11 1 0 0 0 0 2 0 1 0 0 0 0 0 0 16 0 1319.5755 CON__P35908;CON__P35908v2;P35908 CON__P35908 46 61 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.1164E-76 208.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 20 9 17 9 6 0.026642 0.026037 120.39 27 Median 0.048491 0.046644 82.452 2 2 Median 0.029221 0.02476 132.35 9 9 Median NaN NaN NaN 0 0 Median 0.016322 0.013706 139.56 10 10 Median 0.026642 0.027244 9.9718 3 3 Median 0.012296 0.0095847 98.839 3 3 Median 431450000 426370000 5076500 46772000 46530000 241930 160920000 158360000 2557900 20713000 20713000 0 84977000 83604000 1373100 63147000 62612000 534920 54921000 54552000 368710 + 13107 764;765 13637 66596;66597;66598;66599;66600;66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618;66619;66620;66621;66622;66623;66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636;66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647;66648;66649;66650;66651;66652;66653;66654;66655;66656;66657;66658;66659;66660;66661;66662;66663;66664;66665;66666;66667;66668;66669;66670;66671;66672 66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984;66985;66986;66987;66988;66989;66990;66991;66992;66993;66994;66995;66996;66997;66998;66999;67000;67001;67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016;67017;67018;67019;67020;67021;67022;67023;67024;67025;67026;67027;67028;67029;67030;67031;67032;67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043;67044;67045;67046;67047;67048;67049;67050 67011 81 HGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGK ______________________________ GGSAAVAAATASGGKSGGGSCGGGGSYSAS K H G G K S 7 0 0 0 0 0 0 17 1 0 0 1 0 1 1 5 1 0 0 1 0 0 35 0 2629.1865 J3QQW9;Q15022 J3QQW9 6 40 SUZ12 Polycomb protein SUZ12 yes no 3 5.6931E-16 54.05 By MS/MS By matching By matching 1 1 1 0.69437 0.7155 28.428 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50318 0.54906 NaN 1 0 Median 1.118 0.96907 NaN 1 0 Median 0.69437 0.7155 NaN 1 0 Median NaN NaN NaN 0 0 Median 20297000 11667000 8630300 0 0 0 0 0 0 10985000 6628800 4356200 3519700 1648700 1871000 5792500 3389400 2403200 0 0 0 13108 1344 13638 66673;66674;66675 67051 67051 1 HGGGTESLFFDK KLLNLKDSSMADASKHGGGTESLFFDKVRK ASKHGGGTESLFFDKVRKALRSAEAYENFL K H G D K V 0 0 0 1 0 0 1 3 1 0 1 1 0 2 0 1 1 0 0 0 0 0 12 0 1293.599 Q96ST3 Q96ST3 458 469 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 4.8053E-06 102.07 By MS/MS By matching By matching 1 2 1 0.96548 0.911 45.406 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92591 0.99705 NaN 1 0 Median 0.69725 0.63827 37.551 2 0 Median 1.4301 1.4591 NaN 1 0 Median NaN NaN NaN 0 0 Median 10530000 5467600 5062200 0 0 0 0 0 0 6538500 3541700 2996800 2067200 1149300 917950 1924100 776660 1147500 0 0 0 13109 3737 13639 66676;66677;66678;66679 67052;67053 67052 2 HGGGTESLFFDKVR KLLNLKDSSMADASKHGGGTESLFFDKVRK KHGGGTESLFFDKVRKALRSAEAYENFLRC K H G V R K 0 1 0 1 0 0 1 3 1 0 1 1 0 2 0 1 1 0 0 1 0 0 14 1 1548.7685 Q96ST3 Q96ST3 458 471 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 3.2248E-06 131.69 By MS/MS 1 0.99374 1.1266 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99374 1.1266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14939000 7565800 7373000 0 0 0 0 0 0 14939000 7565800 7373000 0 0 0 0 0 0 0 0 0 13110 3737 13640 66680 67054;67055 67054 2 HGGLSLVQTTDYIYPIVDDPYMMGR PRLGIGMDTCVIPLRHGGLSLVQTTDYIYP DYIYPIVDDPYMMGRIACANVLSDLYAMGV R H G G R I 0 1 0 3 0 1 0 3 1 2 2 0 2 0 2 1 2 0 3 2 0 0 25 0 2840.3513 P49903;Q5T5U6;Q5T5U7 P49903 77 101 SEPHS1 Selenide, water dikinase 1 yes no 3 3.1021E-05 32.952 By matching By MS/MS By matching 1 1 1 0.86332 0.74237 13.97 3 Median NaN NaN NaN 0 0 Median 0.86332 0.74237 NaN 1 0 Median 0.65714 0.71391 NaN 1 0 Median 1.0873 0.92509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8704500 5108700 3595800 0 0 0 1094200 629180 465060 7519800 4441600 3078200 90410 37897 52512 0 0 0 0 0 0 13111 2404 13641 66681;66682;66683 67056;67057;67058 67057 3 HGGSLGLGLAAMGTAR YLLNQLKNASNDIVRHGGSLGLGLAAMGTA GGSLGLGLAAMGTARQDVYDLLKTNLYQDD R H G A R Q 3 1 0 0 0 0 0 5 1 0 3 0 1 0 0 1 1 0 0 0 0 0 16 0 1467.7616 A0A087WW66;Q99460 A0A087WW66 475 490 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2;3 4.7184E-08 87.363 By MS/MS By MS/MS 3 1 1.2322 1.0787 14.81 4 Linear 1.2041 1.1594 8.6785 3 1 Plateau 1.0153 0.85515 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40967000 19024000 21943000 35220000 16209000 19012000 5746300 2815000 2931300 0 0 0 0 0 0 0 0 0 0 0 0 13112 54 13642 66684;66685;66686;66687 67059;67060;67061 67060 3 HGGTIPIVPTAEFQDR LLMSVQESLERKFGKHGGTIPIVPTAEFQD GGTIPIVPTAEFQDRISGASEKDIVHSGLA K H G D R I 1 1 0 1 0 1 1 2 1 2 0 0 0 1 2 0 2 0 0 1 0 0 16 0 1736.8846 P00367 P00367 481 496 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2;3 3.1007E-32 155.15 By MS/MS By MS/MS By MS/MS 2 1 2 0.76737 0.78482 43.169 5 Median 0.54124 0.52975 55.586 2 1 Median 1.3845 1.1664 NaN 1 0 Median 0.69659 0.71618 13.907 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49511000 28578000 20933000 30798000 19124000 11674000 7937200 3398900 4538300 10776000 6055400 4720100 0 0 0 0 0 0 0 0 0 13113 1814 13643 66688;66689;66690;66691;66692 67062;67063;67064;67065;67066 67062 5 HGGVIHIYVDK WDTEIKDDVIEECNKHGGVIHIYVDKNSAQ ECNKHGGVIHIYVDKNSAQGNVYVKCPSIA K H G D K N 0 0 0 1 0 0 0 2 2 2 0 1 0 0 0 0 0 0 1 2 0 0 11 0 1236.6615 Q14498;H0Y4X3 Q14498 457 467 RBM39 RNA-binding protein 39 yes no 2;3 7.6878E-05 72.848 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 4 1.1312 0.97513 9.7824 14 Median NaN NaN NaN 0 0 Median 1.096 0.93931 22.864 2 1 Median 1.1225 1.1059 9.9665 3 1 Median 1.1466 0.97515 2.4039 3 0 Plateau 0.94954 0.94313 3.4797 2 0 Median 1.1755 0.97632 7.2374 4 1 Median 110400000 50570000 59825000 0 0 0 7372500 3581600 3790900 75976000 34557000 41419000 7189900 3284700 3905200 12995000 6414000 6581400 6861700 2733100 4128700 13114 2879 13644 66693;66694;66695;66696;66697;66698;66699;66700;66701;66702;66703;66704;66705;66706 67067;67068;67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081;67082;67083;67084;67085;67086;67087;67088;67089 67068 23 HGIEYQEKPLLR NLHKIAPLVKSLCAKHGIEYQEKPLLRALL CAKHGIEYQEKPLLRALLDIIRSLKKSGKL K H G L R A 0 1 0 0 0 1 2 1 1 1 2 1 0 0 1 0 0 0 1 0 0 0 12 1 1481.7991 O95864 O95864 410 421 FADS2 Fatty acid desaturase 2 yes yes 3 1.0416E-06 121.68 By MS/MS By MS/MS 2 1 1.3819 1.2887 50.4 3 Plateau 0.56199 0.57672 9.7873 2 0 Median 1.4866 1.3693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30917000 12808000 18109000 5972700 3727100 2245700 24944000 9081000 15863000 0 0 0 0 0 0 0 0 0 0 0 0 13115 1800 13645 66707;66708;66709 67090;67091;67092 67092 3 HGILSIEQLISR ______________________________ SPKHGILSIEQLISRVGVIGVTLMALLSGF K H G S R V 0 1 0 0 0 1 1 1 1 3 2 0 0 0 0 2 0 0 0 0 0 0 12 0 1364.7776 A0A087WW82;U3KPV2;E9PKY3;P0CG08;B7ZAQ6 A0A087WW82 6 17 GPR89B;GPR89A Golgi pH regulator B;Golgi pH regulator A yes no 2 0.00062698 65.347 By MS/MS 1 1.3694 1.1598 NaN 1 Median NaN NaN NaN 0 0 Median 1.3694 1.1598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287100 907340 1379800 0 0 0 2287100 907340 1379800 0 0 0 0 0 0 0 0 0 0 0 0 13116 56 13646 66710 67093;67094 67093 2 HGINCFINR AEKEKMKEKVERILKHGINCFINRQLIYNY VERILKHGINCFINRQLIYNYPEQLFGAAG K H G N R Q 0 1 2 0 1 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 9 0 1129.5451 P78371;F5GWF6;F8VQ14 P78371 285 293 CCT2 T-complex protein 1 subunit beta yes no 2 0.00080273 97.068 By matching By MS/MS 2 2 1.1286 1.0459 68.153 4 Median 2.0659 2.1205 83.179 2 0 Median 1.0749 0.91779 1.6992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26797000 12135000 14662000 7278100 2516000 4762100 19519000 9619100 9900000 0 0 0 0 0 0 0 0 0 0 0 0 13117 2644 13647 66711;66712;66713;66714 67095;67096 67096 2 HGIPMSHVAR IGNPPDYRGQSCMKRHGIPMSHVARQITKE SCMKRHGIPMSHVARQITKEDFATFDYILC R H G A R Q 1 1 0 0 0 0 0 1 2 1 0 0 1 0 1 1 0 0 0 1 0 0 10 0 1103.5658 P24666;G5E9R5 P24666 67 76 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2 0.029625 34.253 By matching By MS/MS By matching 1 1 1 1.0928 0.90859 13.554 3 Median 0.80212 0.78939 NaN 1 0 Median 1.0928 0.90859 NaN 1 0 Median 1.1091 1.0351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748800 883180 865590 276110 144960 131150 1222000 605630 616360 250670 132580 118080 0 0 0 0 0 0 0 0 0 13118 2125 13648 66715;66716;66717 67097;67098 67097 2 HGIPTAQWK QLESSKRFAKEFMDRHGIPTAQWKAFTKPE KEFMDRHGIPTAQWKAFTKPEEACSFILSA R H G W K A 1 0 0 0 0 1 0 1 1 1 0 1 0 0 1 0 1 1 0 0 0 0 9 0 1036.5454 P22102;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 P22102 117 125 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0091464 49.423 By matching By MS/MS 1 3 0.87212 0.77009 59.841 4 Median 1.0139 0.99689 NaN 1 0 Median 0.75013 0.64065 63.164 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39129000 20415000 18714000 3864700 1833800 2030900 35264000 18581000 16683000 0 0 0 0 0 0 0 0 0 0 0 0 13119 2098 13649 66718;66719;66720;66721 67099 67099 1 HGIVEDWDLMER EAIEKPTYATKWPIRHGIVEDWDLMERFME PIRHGIVEDWDLMERFMEQVIFKYLRAEPE R H G E R F 0 1 0 2 0 0 2 1 1 1 1 0 1 0 0 0 0 1 0 1 0 0 12 0 1498.6875 B4DXW1;P61158;F8WDR7 B4DXW1 29 40 ACTR3 Actin-related protein 3 yes no 2;3 0.0010243 84.17 By matching By matching By MS/MS By matching 1 1 2 1 1.3052 1.2269 6.402 5 Median 1.3465 1.3182 NaN 1 0 Median 1.2793 1.1318 NaN 1 0 Median 1.2631 1.2632 4.1211 2 1 Median 1.3471 1.1824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12048000 4899300 7148700 774680 277140 497540 524890 246720 278170 10624000 4330400 6293400 124530 45016 79512 0 0 0 0 0 0 13120 607 13650 66722;66723;66724;66725;66726 67100;67101;67102 67100 3 HGKAPILIATDVASR DKSQQERDWVLNEFKHGKAPILIATDVASR HGKAPILIATDVASRGLDVEDVKFVINYDY K H G S R G 3 1 0 1 0 0 0 1 1 2 1 1 0 0 1 1 1 0 0 1 0 0 15 1 1547.8784 J3KTA4;P17844 J3KTA4 389 403 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.0028327 44.925 By MS/MS 1 0.94591 0.85189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94591 0.85189 NaN 1 1 Median 6460600 3403300 3057300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6460600 3403300 3057300 13121 1334 13651 66727 67103 67103 1 HGKNPVMELNEK FPSDATAEQGPILTKHGKNPVMELNEKRRG LTKHGKNPVMELNEKRRGLKYELISETGGS K H G E K R 0 0 2 0 0 0 2 1 1 0 1 2 1 0 1 0 0 0 0 1 0 0 12 1 1394.6976 Q12906 Q12906 524 535 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 0.00020443 62.799 By matching By matching By MS/MS By MS/MS 1 1 3 2 0.9253 0.98709 18.078 7 Median 0.81117 0.83928 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95191 1.0896 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87072 0.97456 6.6038 3 1 Median 1.3699 1.2276 24.193 2 0 Median 33387000 17381000 16006000 1870500 961750 908800 0 0 0 2153700 1284200 869430 0 0 0 23008000 12036000 10971000 6354600 3098600 3256000 13122 2769 13652 66728;66729;66730;66731;66732;66733;66734 67104;67105;67106;67107;67108;67109;67110 67106 7 HGLANLTAELLQQGANPNLQTEEALPLPK HRNKWGETPLHTACRHGLANLTAELLQQGA ANPNLQTEEALPLPKEAASLTSLADSVHLQ R H G P K E 4 0 3 0 0 3 3 2 1 0 7 1 0 0 3 0 2 0 0 0 0 0 29 0 3079.6302 Q9P2R3 Q9P2R3 501 529 ANKFY1 Rabankyrin-5 yes yes 3 0.012703 16.27 By MS/MS 1 0.51699 0.52133 NaN 1 Median 0.51699 0.52133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1321100 867370 453710 1321100 867370 453710 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13123 4229 13653 66735 67111;67112 67111 2 HGLEAISIMDSR ITPAHDQNDYEVGQRHGLEAISIMDSRGAL GQRHGLEAISIMDSRGALINVPPPFLGLPR R H G S R G 1 1 0 1 0 0 1 1 1 2 1 0 1 0 0 2 0 0 0 0 0 0 12 0 1327.6554 P26640;A0A140T936 P26640 607 618 VARS Valine--tRNA ligase yes no 2;3 4.3735E-05 95.573 By matching By matching By MS/MS 1 1 3 1.2637 1.1274 7.0338 5 Median NaN NaN NaN 0 0 Median 1.2637 1.1184 NaN 1 0 Median 1.0273 1.1274 NaN 1 0 Median 1.4945 1.2716 9.7718 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11098000 5280300 5817400 0 0 0 644090 294350 349740 2876900 1406900 1469900 7576700 3579000 3997700 0 0 0 0 0 0 13124 2148 13654;13655 66736;66737;66738;66739;66740 67113;67114;67115 67114 911 3 HGLEKPISFVK DQLEQILSVSELLEKHGLEKPISFVKNTQS LLEKHGLEKPISFVKNTQSSSEEARKLMVR K H G V K N 0 0 0 0 0 0 1 1 1 1 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1253.7132 A2RRP1;H0Y5G7;H7BZU5;C9JCM7 A2RRP1 1053 1063 NBAS Neuroblastoma-amplified sequence yes no 3 0.0019762 59.418 By MS/MS 1 0.84325 0.80456 NaN 1 Median NaN NaN NaN 0 0 Median 0.84325 0.80456 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8848300 5159600 3688800 0 0 0 8848300 5159600 3688800 0 0 0 0 0 0 0 0 0 0 0 0 13125 500 13656 66741 67116 67116 1 HGLEVIYMIEPIDEYCVQQLK KDQVANSAFVERLRKHGLEVIYMIEPIDEY YMIEPIDEYCVQQLKEFEGKTLVSVTKEGL K H G L K E 0 0 0 1 1 2 3 1 1 3 2 1 1 0 1 0 0 0 2 2 0 0 21 0 2576.2655 P07900 P07900 514 534 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.0015589 37.672 By MS/MS 1 1.0148 0.88729 NaN 1 Median NaN NaN NaN 0 0 Median 1.0148 0.88729 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5065800 2151800 2914000 0 0 0 5065800 2151800 2914000 0 0 0 0 0 0 0 0 0 0 0 0 13126 1894 13657 66742 67117 67117 1 HGLEVSEMAVSELPGNPNAVWTVR VACGRGPRSSLRVLRHGLEVSEMAVSELPG VSELPGNPNAVWTVRRHIEDEFDAYIIVSF R H G V R R 2 1 2 0 0 0 3 2 1 0 2 0 1 0 2 2 1 1 0 4 0 0 24 0 2591.2802 Q15393;J3QKV4 Q15393 440 463 SF3B3 Splicing factor 3B subunit 3 yes no 3 5.2874E-05 32.391 By MS/MS By MS/MS 1 2 0.72803 0.67391 12.493 3 Median NaN NaN NaN 0 0 Median 0.79952 0.67391 NaN 1 0 Median 0.65327 0.72044 16.806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4781700 2465200 2316500 0 0 0 2040000 904330 1135700 2741700 1560900 1180800 0 0 0 0 0 0 0 0 0 13127 2946 13658 66743;66744;66745 67118;67119 67119 2 HGLINFGIYK SDTVLVHRVHSYLERHGLINFGIYKRIKPL SYLERHGLINFGIYKRIKPLPTKKTGKVII R H G Y K R 0 0 1 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1160.6342 O60341;R4GMQ1 O60341 259 268 KDM1A Lysine-specific histone demethylase 1A yes no 2 2.9585E-08 141.39 By MS/MS By MS/MS 1 1 0.63327 0.61305 78.594 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99285 1.0687 NaN 1 0 Median 0.40391 0.35167 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45721000 22781000 22940000 0 0 0 0 0 0 38032000 18134000 19898000 7688400 4647200 3041200 0 0 0 0 0 0 13128 1613 13659 66746;66747 67120;67121;67122 67122 3 HGLINFGIYKR SDTVLVHRVHSYLERHGLINFGIYKRIKPL YLERHGLINFGIYKRIKPLPTKKTGKVIII R H G K R I 0 1 1 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 1 0 0 0 11 1 1316.7353 O60341;R4GMQ1 O60341 259 269 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.033758 18.957 By MS/MS 1 1.0544 1.1996 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0544 1.1996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1934000 798660 1135400 0 0 0 0 0 0 1934000 798660 1135400 0 0 0 0 0 0 0 0 0 13129 1613 13660 66748 67123 67123 1 HGLLVPNNTTDQELQHIR IAGCRIIGRMCVGNRHGLLVPNNTTDQELQ LVPNNTTDQELQHIRNSLPDTVQIRRVEER R H G I R N 0 1 2 1 0 2 1 1 2 1 3 0 0 0 1 0 2 0 0 1 0 0 18 0 2084.0763 P56537;B7ZBH1 P56537 68 85 EIF6 Eukaryotic translation initiation factor 6 yes no 3;4 1.3386E-20 180.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1 1.0675 0.98846 6.3842 10 Median 1.0046 0.95558 0.37338 2 0 Median 1.192 1.0081 0.20593 2 0 Median 1.049 1.008 NaN 1 0 Median 1.1685 0.97061 NaN 1 1 Median 0.88861 0.89268 11.704 3 3 Median 1.2723 1.0203 NaN 1 0 Median 199540000 97251000 102290000 120710000 60263000 60448000 22606000 9608500 12998000 8475000 3855100 4620000 6284600 2662900 3621800 26458000 14570000 11888000 15002000 6291100 8711000 13130 2513 13661 66749;66750;66751;66752;66753;66754;66755;66756;66757;66758 67124;67125;67126;67127;67128;67129;67130;67131;67132;67133;67134;67135;67136;67137;67138;67139;67140;67141 67125 18 HGLPSADAPSLK NLWSAYLEKGDIVEKHGLPSADAPSLKESL VEKHGLPSADAPSLKESLPLYVVADIATSF K H G L K E 2 0 0 1 0 0 0 1 1 0 2 1 0 0 2 2 0 0 0 0 0 0 12 0 1191.6248 I3L4N6;Q9UP95 I3L4N6 346 357 SLC12A4 Solute carrier family 12 member 4 yes no 2 0.00017484 102.06 By MS/MS By MS/MS By matching 2 2 1 1.1864 0.82135 20.101 4 Linear 0.99931 0.99011 27.608 2 0 Median 0.9153 0.80419 4.1664 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15393000 7586500 7806100 6567700 3503000 3064800 7616900 3633800 3983100 1208000 449740 758230 0 0 0 0 0 0 0 0 0 13131 1293 13662 66759;66760;66761;66762;66763 67142;67143;67144 67144 3 HGLTEELLSR DRFTRRGVDPAPLAKHGLTEELLSRMAAAG APLAKHGLTEELLSRMAAAGGTVSGPSSAC K H G S R M 0 1 0 0 0 0 2 1 1 0 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1153.6091 A0A087X2H1;Q9ULT8;G3V4V5;A0A087WVU6 A0A087X2H1 230 239 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 0.00014131 120.33 By MS/MS 2 0.90163 0.73989 20.223 2 Median NaN NaN NaN 0 0 Median 0.90163 0.73989 20.223 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19121000 8825900 10295000 0 0 0 19121000 8825900 10295000 0 0 0 0 0 0 0 0 0 0 0 0 13132 137 13663 66764;66765 67145;67146 67145 2 HGLVPFAFVR FYKYGRIREIELKNRHGLVPFAFVRFEDPR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN R H G V R F 1 1 0 0 0 0 0 1 1 0 1 0 0 2 1 0 0 0 0 2 0 0 10 0 1141.6396 Q13242;H0YIB4;S4R3G0 Q13242 49 58 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00038567 104.21 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 3 0.93482 0.80118 49.26 9 Median 3.259 3.1514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96653 0.92852 NaN 1 0 Median 0.93482 0.77367 NaN 1 0 Median 1.0002 1.016 11.884 3 0 Plateau 0.90431 0.72356 18.732 3 0 Median 135600000 63898000 71704000 9544700 824860 8719900 0 0 0 14651000 7511900 7138600 1888500 953600 934880 80341000 40164000 40177000 29177000 14444000 14733000 13133 2799 13664 66766;66767;66768;66769;66770;66771;66772;66773;66774 67147;67148;67149;67150;67151;67152;67153;67154;67155;67156;67157 67147 11 HGLYLPTR FMDTMLQMSILGSAKHGLYLPTRVTAIHID SILGSAKHGLYLPTRVTAIHIDPATHRQKL K H G T R V 0 1 0 0 0 0 0 1 1 0 2 0 0 0 1 0 1 0 1 0 0 0 8 0 955.52395 P49327;A0A0U1RQF0 P49327 1044 1051 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0022957 131.04 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1.0976 0.9792 17.42 8 Median 0.92844 0.87112 7.8337 3 0 Median 1.3084 1.1078 18.591 3 0 Median 0.77505 0.86094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2399 1.0359 NaN 1 0 Median 137570000 62860000 74710000 41935000 21795000 20140000 92018000 38915000 53103000 2383100 1445300 937840 0 0 0 0 0 0 1233600 704090 529550 13134 2377 13665 66775;66776;66777;66778;66779;66780;66781;66782 67158;67159;67160;67161;67162;67163;67164;67165;67166;67167;67168;67169;67170;67171 67164 14 HGMFLVR PVSRQEAQTRLQGQRHGMFLVRDSSTCPGD QTRLQGQRHGMFLVRDSSTCPGDYVLSVSE R H G V R D 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 858.45343 P46109 P46109 33 39 CRKL Crk-like protein yes yes 2 0.013448 76.347 By MS/MS By MS/MS By MS/MS 2 1 1 1.1496 1.0448 34.808 4 Median 1.5058 1.4665 47.756 2 0 Median 1.2545 1.0434 NaN 1 0 Median 1.0013 0.99098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21938000 10034000 11904000 7794300 3418500 4375800 9568000 4225900 5342100 4575300 2389600 2185700 0 0 0 0 0 0 0 0 0 13135 2341 13666 66783;66784;66785;66786 67172;67173;67174;67175;67176 67172 5 HGNFGPHLDPK PCKIVMSTVCVYVNKHGNFGPHLDPKRIQQ YVNKHGNFGPHLDPKRIQQLPDHFGPGPVN K H G P K R 0 0 1 1 0 0 0 2 2 0 1 1 0 1 2 0 0 0 0 0 0 0 11 0 1217.5942 Q9UQR0;B4DRC2 Q9UQR0 364 374 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.00089294 50.108 By MS/MS By matching By matching 1 1 1 0.82221 0.77779 10.48 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73225 0.77779 NaN 1 0 Median 0.85863 0.75301 NaN 1 0 Median 0.82221 0.91562 NaN 1 0 Median NaN NaN NaN 0 0 Median 5435900 3033200 2402800 0 0 0 0 0 0 4499600 2474000 2025600 413620 212460 201160 522750 346680 176060 0 0 0 13136 4363 13667 66787;66788;66789 67177;67178 67178 2 HGNPEEEEWLTAER EVNKVISSVSYYTHRHGNPEEEEWLTAERM RHGNPEEEEWLTAERMAEWIQQNNILSIVL R H G E R M 1 1 1 0 0 0 5 1 1 0 1 0 0 0 1 0 1 1 0 0 0 0 14 0 1695.7489 Q93008 Q93008 372 385 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 2.7813E-07 98.156 By matching By MS/MS 1 3 1.0166 0.83903 4.7938 4 Median 0.81661 0.76793 NaN 1 0 Median 1.0199 0.84019 1.0237 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31231000 16508000 14722000 9071000 5459300 3611700 22160000 11049000 11110000 0 0 0 0 0 0 0 0 0 0 0 0 13137 3573 13668 66790;66791;66792;66793 67179;67180 67180 2 HGNQYIQVNEPWKR VRIRDALRSILTISRHGNQYIQVNEPWKRI RHGNQYIQVNEPWKRIKGSEADRQRAGTVT R H G K R I 0 1 2 0 0 2 1 1 1 1 0 1 0 0 1 0 0 1 1 1 0 0 14 1 1767.8805 P56192 P56192 714 727 MARS Methionine--tRNA ligase, cytoplasmic yes yes 3 8.1376E-05 72.891 By MS/MS 1 0.8487 0.88411 NaN 1 Median 0.8487 0.88411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9951200 4852500 5098700 9951200 4852500 5098700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13138 2508 13669 66794 67181;67182 67182 2 HGNVASLVQR ETEFKDDSLPIKRERHGNVASLVQRISTYG IKRERHGNVASLVQRISTYGLPAGGIQPHP R H G Q R I 1 1 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1079.5836 Q9Y5K6 Q9Y5K6 75 84 CD2AP CD2-associated protein yes yes 2 0.0075699 66.621 By MS/MS By MS/MS 1 1 1.526 1.3222 NaN 1 Median NaN NaN NaN 0 0 Median 1.526 1.3222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4193500 1007900 3185600 0 0 0 4193500 1007900 3185600 0 0 0 0 0 0 0 0 0 0 0 0 13139 4460 13670 66795;66796 67183;67184 67184 2 HGPLALVDK ITYMHSEGILAGELKHGPLALVDKLMPVIM LAGELKHGPLALVDKLMPVIMIIMRDHTYA K H G D K L 1 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 948.53927 Q06210 Q06210 595 603 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.00072961 101.72 By MS/MS 2 1.1026 0.94843 2.8241 2 Median NaN NaN NaN 0 0 Median 1.1026 0.94843 2.8241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11358000 5418600 5939500 0 0 0 11358000 5418600 5939500 0 0 0 0 0 0 0 0 0 0 0 0 13140 2723 13671 66797;66798 67185;67186;67187;67188 67188 4 HGPLHPIPNRPVLTR WCEECNNAHASVCPKHGPLHPIPNRPVLTR HGPLHPIPNRPVLTRARASLPLVLYIDRFL K H G T R A 0 2 1 0 0 0 0 1 2 1 2 0 0 0 4 0 1 0 0 1 0 0 15 1 1702.9743 Q9NQV6;E9PLV1 Q9NQV6 189 203 PRDM10 PR domain zinc finger protein 10 yes no 4 0.00017217 48.14 By MS/MS 1 0.40212 0.48907 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40212 0.48907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3097800 1939000 1158800 0 0 0 0 0 0 3097800 1939000 1158800 0 0 0 0 0 0 0 0 0 13141 963 13672 66799 67189;67190 67190 2 HGQFTLR ELKLDDNEALIEKLKHGQFTLRDMYEQFQN EALIEKLKHGQFTLRDMYEQFQNIMKMGPF K H G L R D 0 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 857.45079 G3V4F7;P61011 G3V4F7 260 266 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.047302 41.502 By matching By MS/MS By matching By matching 1 1 1 1 1.371 1.2288 13.075 4 Median 1.0266 1.0083 NaN 1 0 Median 1.4535 1.2343 NaN 1 0 Median 1.3342 1.3817 NaN 1 0 Median 1.4088 1.2232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6643400 2574500 4068900 926410 468550 457860 4461200 1637200 2824100 643790 245480 398310 611920 223290 388630 0 0 0 0 0 0 13142 1116 13673 66800;66801;66802;66803 67191;67192 67191 2 HGRPGIGATHSSR GHYLGEFSITYKPVKHGRPGIGATHSSRFI VKHGRPGIGATHSSRFIPLK__________ K H G S R F 1 2 0 0 0 0 0 3 2 1 0 0 0 0 1 2 1 0 0 0 0 0 13 1 1331.6807 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841;K7EQJ5 K7EM56 95 107 RPS15 40S ribosomal protein S15 yes no 3 0.016751 24.929 By MS/MS 1 1.0031 0.91769 NaN 1 Median NaN NaN NaN 0 0 Median 1.0031 0.91769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 817700 394460 423250 0 0 0 817700 394460 423250 0 0 0 0 0 0 0 0 0 0 0 0 13143 221 13674 66804 67193 67193 1 HGSFLVR LSGKEAEKLLTEKGKHGSFLVRESQSHPGD KLLTEKGKHGSFLVRESQSHPGDFVLSVRT K H G V R E 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 7 0 814.44497 Q06124;A0A1W2PPU4 Q06124 132 138 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.0043843 100.74 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.98452 0.94728 23.616 4 Median 0.82094 0.82489 NaN 1 0 Median 1.1211 0.96992 NaN 1 0 Median 0.8646 0.92516 NaN 1 0 Median 1.6441 1.422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13693000 6676300 7016900 2364900 1320400 1044500 10192000 4653900 5537800 954540 631310 323230 182060 70654 111410 0 0 0 0 0 0 13144 2721 13675 66805;66806;66807;66808 67194;67195;67196 67196 3 HGSGSGQSSSYGPYGSGSGWSSSR HGSGSGQSPSPSRGRHGSGSGQSSSYGPYG SYGPYGSGSGWSSSRGPYESGSGHSSGLGH R H G S R G 0 1 0 0 0 1 0 7 1 0 0 0 0 0 1 10 0 1 2 0 0 0 24 0 2317.9584 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1954 1977 HRNR Hornerin yes no 3 1.068E-05 49.25 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3141100 3141100 0 0 0 0 0 0 0 0 0 0 642340 642340 0 0 0 0 2498800 2498800 0 + 13145 790 13676 66809;66810 67197;67198 67198 2 HGSGSGQSSSYSPYGSGSGWSSSR HGSGSGQSPSPSRGRHGSGSGQSSSYSPYG SYSPYGSGSGWSSSRGPYESGSSHSSGLGH R H G S R G 0 1 0 0 0 1 0 6 1 0 0 0 0 0 1 11 0 1 2 0 0 0 24 0 2347.969 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1484 1507 HRNR Hornerin yes no 3 1.7424E-38 117.02 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22381000 22381000 0 3768500 3768500 0 8537800 8537800 0 0 0 0 4748500 4748500 0 0 0 0 5326300 5326300 0 + 13146 790 13677 66811;66812;66813;66814;66815;66816 67199;67200;67201;67202;67203;67204 67200 6 HGSLGFLPR ______________________________ KFSAPRHGSLGFLPRKRSSRHRGKVKSFPK R H G P R K 0 1 0 0 0 0 0 2 1 0 2 0 0 1 1 1 0 0 0 0 0 0 9 0 982.53485 P39023;H7C422;H7C3M2;F8WCR1 P39023 11 19 RPL3 60S ribosomal protein L3 yes no 2 2.4446E-32 214.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 3 2 2 3 1.0627 1.024 20.451 21 Median 0.99656 0.97022 11.66 5 1 Median 1.0414 0.89731 10.307 7 0 Median 1.0627 1.1214 5.4235 3 2 Median 1.3499 1.1354 17.184 2 1 Median 0.72534 0.72854 NaN 1 1 Median 1.9762 1.566 24.804 3 0 Median 593640000 293230000 300400000 229340000 115270000 114070000 201250000 98534000 102720000 41607000 20549000 21058000 58177000 27579000 30598000 29366000 16988000 12379000 33890000 14309000 19581000 13147 2281 13678 66817;66818;66819;66820;66821;66822;66823;66824;66825;66826;66827;66828;66829;66830;66831;66832;66833;66834;66835;66836;66837;66838 67205;67206;67207;67208;67209;67210;67211;67212;67213;67214;67215;67216;67217;67218;67219;67220;67221;67222;67223;67224;67225;67226;67227;67228;67229;67230;67231;67232 67219 28 HGSNIEAMSK TRKGLIEVKTDEFPRHGSNIEAMSKLKPYF DEFPRHGSNIEAMSKLKPYFLTDGTGTVTP R H G S K L 1 0 1 0 0 0 1 1 1 1 0 1 1 0 0 2 0 0 0 0 0 0 10 0 1072.4971 Q9BWD1 Q9BWD1 224 233 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 0.0066695 48.794 By matching By MS/MS 1 1 1.1285 1.0343 7.4949 2 Median 1.005 0.98096 NaN 1 0 Median 1.2672 1.0906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2090800 955260 1135500 347970 173620 174350 1742800 781640 961150 0 0 0 0 0 0 0 0 0 0 0 0 13148 3868 13679 66839;66840 67233;67234 67234 2 HGSYEDAVHSGALND IDDLIKLHPESKDDKHGSYEDAVHSGALND HGSYEDAVHSGALND_______________ K H G N D - 2 0 1 2 0 0 1 2 2 0 1 0 0 0 0 2 0 0 1 1 0 0 15 0 1570.6648 P17987;E7EQR6;F5H282 P17987 542 556 TCP1 T-complex protein 1 subunit alpha yes no 2;3 1.0971E-31 155.06 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50084000 0 0 14632000 0 0 31956000 0 0 2606500 0 0 890230 0 0 0 0 0 0 0 0 13149 2051 13680 66841;66842;66843;66844;66845;66846 67235;67236;67237;67238;67239;67240 67238 6 HGVDHQVISVTFEK WTVALWSRYLLAMERHGVDHQVISVTFEKA RHGVDHQVISVTFEKALNAGFIQATDYVEI R H G E K A 0 0 0 1 0 1 1 1 2 1 0 1 0 1 0 1 1 0 0 3 0 0 14 0 1594.8104 A0A499FI31;Q15020 A0A499FI31 410 423 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 8.0293E-05 72.175 By matching By MS/MS By MS/MS 1 2 1 1.021 1.0397 30.158 4 Median 1.1262 1.0908 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8355 0.84539 22.48 2 0 Median 1.7394 1.5001 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25249000 11376000 13873000 9982500 4301000 5681600 0 0 0 10840000 5496100 5343700 4426300 1578500 2847900 0 0 0 0 0 0 13150 473 13681 66847;66848;66849;66850 67241;67242 67242 2 HGVDVEVQGPHEAR LAKIFYDRAEYLHGKHGVDVEVQGPHEARD KHGVDVEVQGPHEARDGQLLIRLDLNRKEV K H G A R D 1 1 0 1 0 1 2 2 2 0 0 0 0 0 1 0 0 0 0 3 0 0 14 0 1528.7383 Q9HCE1;Q5JR04 Q9HCE1 122 135 MOV10 Putative helicase MOV-10 yes no 3 1.5851E-05 84.468 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.441 1.2076 26.308 4 Median 0.7466 0.74 NaN 1 1 Median 1.5486 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4886 1.2717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3948 1.1467 NaN 1 0 Median 10007000 4125100 5882300 1899900 1142900 756930 6745500 2435000 4310500 0 0 0 824240 308960 515280 0 0 0 537800 238220 299590 13151 4029 13682 66851;66852;66853;66854;66855 67243;67244;67245;67246;67247 67246 5 HGVESTLER VQELASPSLLFIFVRHGVESTLERSAIARE LFIFVRHGVESTLERSAIAREHMGQLLHQL R H G E R S 0 1 0 0 0 0 2 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1026.5094 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1118 1126 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.0073226 51.854 By matching By MS/MS By matching By matching 1 1 1 1 0.98065 0.82747 19.484 4 Median 0.72602 0.72916 NaN 1 0 Median 0.92663 0.79103 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2912 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0378 0.86559 NaN 1 0 Median 8025300 3905000 4120300 316960 178250 138710 7064900 3402800 3662100 0 0 0 87726 40315 47411 0 0 0 555730 283650 272080 13152 894 13683 66856;66857;66858;66859 67248;67249 67249 2 HGVFLVR RLSRQEAVALLQGQRHGVFLVRDSSTSPGD VALLQGQRHGVFLVRDSSTSPGDYVLSVSE R H G V R D 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 2 0 0 7 0 826.48136 P46108;I3L297 P46108 32 38 CRK Adapter molecule crk yes no 2 0.014361 74.597 By MS/MS By MS/MS By MS/MS 2 1 2 1.1011 0.9941 36.513 5 Median 1.0926 1.0356 10.024 2 0 Median 1.1856 0.9941 NaN 1 0 Median 0.71604 0.68572 57.569 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12803000 6127500 6675300 8016100 3780900 4235300 2743100 1270800 1472300 2043500 1075800 967750 0 0 0 0 0 0 0 0 0 13153 2340 13684 66860;66861;66862;66863;66864 67250;67251;67252;67253 67250 4 HGVHMMVATPGR CIGGMSVKEQMETIRHGVHMMVATPGRLMD TIRHGVHMMVATPGRLMDLLQKKMVSLDIC R H G G R L 1 1 0 0 0 0 0 2 2 0 0 0 2 0 1 0 1 0 0 2 0 0 12 0 1291.6278 Q9UJV9 Q9UJV9 312 323 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.0013656 42.031 By MS/MS 1 1.0113 1.0692 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.0692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1668500 675950 992550 0 0 0 0 0 0 1668500 675950 992550 0 0 0 0 0 0 0 0 0 13154 4299 13685 66865 67254 67254 1 HGVIVAADSR IEMLHGTTTLAFKFRHGVIVAADSRATAGA AFKFRHGVIVAADSRATAGAYIASQTVKKV R H G S R A 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1023.5461 P28074;H0YJM8 P28074 69 78 PSMB5 Proteasome subunit beta type-5 yes no 2 3.607E-11 138.06 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 1.1404 1.0088 4.6793 6 Median 1.073 1.0173 NaN 1 0 Median 1.194 0.99961 0.10333 2 1 Median 1.082 1.0202 NaN 1 0 Median 1.2961 1.0576 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1008 0.91906 NaN 1 0 Median 27258000 12637000 14621000 10845000 5141200 5703400 13993000 6323800 7669300 2094400 1009700 1084700 259590 130480 129110 0 0 0 65764 31564 34200 13155 2162 13686 66866;66867;66868;66869;66870;66871;66872 67255;67256;67257;67258;67259;67260;67261;67262;67263;67264;67265;67266 67266 12 HGVPISVTGIAQVK NTLTLNVKSEKVYTRHGVPISVTGIAQVKI RHGVPISVTGIAQVKIQGQNKEMLAAACQM R H G V K I 1 0 0 0 0 1 0 2 1 2 0 1 0 0 1 1 1 0 0 3 0 0 14 0 1404.8089 O75955;A2AB10;A2AB12;A0A0G2JJQ6;A2AB13 O75955 59 72 FLOT1 Flotillin-1 yes no 3 0.00090757 38.799 By matching By matching By MS/MS 1 1 1 1.0145 0.86586 42.009 3 Median 0.53779 0.51109 NaN 1 0 Median 1.0145 0.86586 NaN 1 0 Median 1.2032 1.1723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14912000 8177000 6734900 3853900 2592700 1261100 3303600 1573100 1730500 7754500 4011200 3743300 0 0 0 0 0 0 0 0 0 13156 1712 13687 66873;66874;66875 67267;67268 67267 2 HGVQELEIELQSQLSK GQEVQSSAKEVTQLRHGVQELEIELQSQLS GVQELEIELQSQLSKKAALEKSLEDTKNRY R H G S K K 0 0 0 0 0 3 3 1 1 1 3 1 0 0 0 2 0 0 0 1 0 0 16 0 1836.9581 P35527;CON__P35527;K7EQQ3 P35527 375 390 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 5.7517E-142 254.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 6 2 7 0.064148 0.060428 105.78 15 Median 0.048234 0.047571 51.025 4 4 Median 0.064148 0.053849 157.36 3 3 Median 0.088708 0.09758 108.34 3 3 Median 0.062215 0.053299 80.888 2 2 Median 0.037784 0.036028 120.41 3 3 Median NaN NaN NaN 0 0 Median 218500000 212090000 6404600 43326000 41482000 1843700 75052000 72149000 2902600 18320000 17526000 793780 3822200 3692000 130220 77976000 77242000 734250 0 0 0 + 13157 2242 13688 66876;66877;66878;66879;66880;66881;66882;66883;66884;66885;66886;66887;66888;66889;66890;66891;66892;66893;66894;66895;66896;66897;66898;66899;66900;66901 67269;67270;67271;67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285;67286;67287;67288;67289;67290;67291;67292;67293;67294;67295;67296 67290 28 HGVQELEIELQSQLSKK GQEVQSSAKEVTQLRHGVQELEIELQSQLS VQELEIELQSQLSKKAALEKSLEDTKNRYC R H G K K A 0 0 0 0 0 3 3 1 1 1 3 2 0 0 0 2 0 0 0 1 0 0 17 1 1965.0531 P35527;CON__P35527;K7EQQ3 P35527 375 391 KRT9 Keratin, type I cytoskeletal 9 yes no 3 3.9204E-12 94.01 By MS/MS By MS/MS 5 3 0.043444 0.048647 98.671 7 Median 0.071458 0.07376 109.93 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.034855 0.037215 40.583 3 3 Median NaN NaN NaN 0 0 Median 74157000 71950000 2207600 31395000 29967000 1427800 0 0 0 0 0 0 0 0 0 42762000 41982000 779770 0 0 0 + 13158 2242 13689 66902;66903;66904;66905;66906;66907;66908;66909 67297;67298;67299;67300;67301;67302;67303;67304;67305;67306 67297 10 HGVVPLATYMR KRRGTRYMFSRPFRKHGVVPLATYMRIYKK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT K H G M R I 1 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 1 2 0 0 11 0 1242.6543 P46778;G3V1B3;M0R181 P46778 22 32 RPL21 60S ribosomal protein L21 yes no 2;3 9.412E-10 174.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 6 3 2 7 3 1.1096 1.0213 21.111 28 Median 1.0393 0.98846 32.063 7 0 Median 1.1259 0.93483 17.955 6 0 Median 1.1072 1.058 7.6124 3 0 Median 1.0961 0.91063 16.985 2 0 Median 1.0638 1.0778 10.625 7 1 Median 1.2615 1.0866 13.341 3 0 Median 617990000 295610000 322380000 342800000 164040000 178760000 60167000 29103000 31065000 53178000 25926000 27252000 23574000 10515000 13060000 132260000 63186000 69076000 6016200 2841700 3174500 13159 2344 13690;13691 66910;66911;66912;66913;66914;66915;66916;66917;66918;66919;66920;66921;66922;66923;66924;66925;66926;66927;66928;66929;66930;66931;66932;66933;66934;66935;66936;66937 67307;67308;67309;67310;67311;67312;67313;67314;67315;67316;67317;67318;67319;67320;67321;67322;67323;67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334 67312 1068 28 HGYAPSDLPVK KIYQVLDFRIRCGMKHGYAPSDLPVKAKRS CGMKHGYAPSDLPVKAKRSTYNYSLPITVK K H G V K A 1 0 0 1 0 0 0 1 1 0 1 1 0 0 2 1 0 0 1 1 0 0 11 0 1182.6033 Q9Y5Q8;Q5T7U1;H7BY84;Q5T7U0;H0Y5D2 Q9Y5Q8 329 339 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0001696 79.906 By MS/MS 1 0.56996 0.57609 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56996 0.57609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4264900 2631500 1633300 0 0 0 0 0 0 4264900 2631500 1633300 0 0 0 0 0 0 0 0 0 13160 4466 13692 66938 67335;67336 67336 2 HGYEKPTPIQTQAIPAIMSGR VQCGISMKILNSLKKHGYEKPTPIQTQAIP TPIQTQAIPAIMSGRDLIGIAKTGSGKTIA K H G G R D 2 1 0 0 0 2 1 2 1 3 0 1 1 0 3 1 2 0 1 0 0 0 21 1 2294.1841 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 390 410 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3;4 9.2115E-18 103.26 By matching By matching By MS/MS By matching 1 1 2 1 0.71174 0.68399 27.49 5 Median 0.59429 0.61887 NaN 1 0 Median 0.966 0.92551 NaN 1 0 Median 0.71568 0.81143 44.905 2 1 Median 0.71174 0.68399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44718000 24617000 20101000 7844100 4283900 3560200 788710 420900 367820 35214000 19399000 15815000 870590 512750 357840 0 0 0 0 0 0 13161 3216 13693 66939;66940;66941;66942;66943 67337;67338;67339 67338 3 HGYIGEFEIIDDHR PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA KHGYIGEFEIIDDHRAGKIVVNLTGRLNKC K H G H R A 0 1 0 2 0 0 2 2 2 3 0 0 0 1 0 0 0 0 1 0 0 0 14 0 1699.7954 H3BN98;I3L3P7;P62244;I3L246 I3L3P7 44 57 RPS15A 40S ribosomal protein S15a no no 2;3 1.5731E-08 102.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1605 1.1314 5.4066 5 Median 1.127 1.0874 NaN 1 0 Median 1.4211 1.2043 NaN 1 0 Median 1.1203 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1605 1.2282 NaN 1 0 Median 1.4762 1.1017 NaN 1 0 Median 82304000 37472000 44832000 16313000 7051100 9262400 3433500 1657000 1776500 38582000 18024000 20557000 0 0 0 13450000 6443100 7007400 10525000 4296400 6229000 13162 1289;1213 13694 66944;66945;66946;66947;66948;66949 67340;67341;67342;67343;67344;67345;67346;67347;67348 67341 9 HGYMGHLTR AWEMNEKKQAEGGRRHGYMGHLTRIANCIV AEGGRRHGYMGHLTRIANCIVHSTDKGPNS R H G T R I 0 1 0 0 0 0 0 2 2 0 1 0 1 0 0 0 1 0 1 0 0 0 9 0 1070.508 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;H0YEN2;H0YDW1 H7BXH2 455 463 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2 0.0545 43.808 By MS/MS 1 1.2404 1.0847 NaN 1 Median NaN NaN NaN 0 0 Median 1.2404 1.0847 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1125100 523420 601690 0 0 0 1125100 523420 601690 0 0 0 0 0 0 0 0 0 0 0 0 13163 946 13695 66950 67349 67349 1 HHAAYVNNLNVTEEK EPHINAQIMQLHHSKHHAAYVNNLNVTEEK HHAAYVNNLNVTEEKYQEALAKGDVTAQIA K H H E K Y 2 0 3 0 0 0 2 0 2 0 1 1 0 0 0 0 1 0 1 2 0 0 15 0 1737.8434 P04179;F5H3C5;F5H4R2;F5GYZ5;G8JLJ2;G5E9P6;F5GXZ9 P04179 54 68 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 3;4 2.5504E-05 80.96 By MS/MS By MS/MS 1 2 1.3203 1.1068 14.251 3 Median 0.99268 0.9268 NaN 1 0 Median 1.3815 1.1661 7.3854 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22202000 10508000 11695000 12527000 6697900 5828700 9675600 3809800 5865800 0 0 0 0 0 0 0 0 0 0 0 0 13164 1845 13696 66951;66952;66953 67350;67351;67352 67350 3 HHAAYVNNLNVTEEKYQEALAK EPHINAQIMQLHHSKHHAAYVNNLNVTEEK NLNVTEEKYQEALAKGDVTAQIALQPALKF K H H A K G 4 0 3 0 0 1 3 0 2 0 2 2 0 0 0 0 1 0 2 2 0 0 22 1 2541.2612 P04179;F5H3C5;F5H4R2;F5GYZ5;G8JLJ2;G5E9P6;F5GXZ9 P04179 54 75 SOD2 Superoxide dismutase [Mn], mitochondrial yes no 3;4 2.6718E-15 96.79 By MS/MS By matching 2 1 0.9299 0.94401 6.0966 3 Median 0.91225 0.92562 2.7814 2 0 Median 1.119 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82009000 43116000 38893000 77375000 41319000 36056000 4634000 1797200 2836800 0 0 0 0 0 0 0 0 0 0 0 0 13165 1845 13697 66954;66955;66956 67353;67354;67355;67356 67355 4 HHAEYLTELLTTQR VVRPQDQTVVFVATKHHAEYLTELLTTQRV KHHAEYLTELLTTQRVSCAHIYSALDPTAR K H H Q R V 1 1 0 0 0 1 2 0 2 0 3 0 0 0 0 0 3 0 1 0 0 0 14 0 1710.8689 Q8TDD1 Q8TDD1 349 362 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.00035624 49.31 By MS/MS 1 1.3259 1.4194 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3259 1.4194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4070000 1712800 2357100 0 0 0 0 0 0 4070000 1712800 2357100 0 0 0 0 0 0 0 0 0 13166 3470 13698 66957 67357 67357 1 HHCPNTPIILVGTK ASFENVRAKWYPEVRHHCPNTPIILVGTKL RHHCPNTPIILVGTKLDLRDDKDTIEKLKE R H H T K L 0 0 1 0 1 0 0 1 2 2 1 1 0 0 2 0 2 0 0 1 0 0 14 0 1585.8399 P63000 P63000 103 116 RAC1 Ras-related C3 botulinum toxin substrate 1 yes yes 3 0.00017289 65.092 By matching By MS/MS By MS/MS 1 4 1 0.80729 0.67912 26.116 5 Median 0.72095 0.67322 NaN 1 0 Median 0.83677 0.7099 29.363 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27882000 14624000 13258000 4042600 2406700 1635900 23839000 12217000 11622000 0 0 0 0 0 0 0 0 0 0 0 0 13167 2615 13699 66958;66959;66960;66961;66962;66963 67358;67359;67360;67361;67362;67363;67364 67361 7 HHGDVMDLQFFDQER DGGFEGDHQLLCDIRHHGDVMDLQFFDQER HHGDVMDLQFFDQERIVAASSTGCVTVFLH R H H E R I 0 1 0 3 0 2 1 1 2 0 1 0 1 2 0 0 0 0 0 1 0 0 15 0 1872.8213 Q8NFH3;B4E301;F5H0E3;B4DVD1 Q8NFH3 73 87 NUP43 Nucleoporin Nup43 yes no 3;4 4.05E-10 113.25 By matching By MS/MS By matching 1 3 2 1.011 1.0008 15.061 6 Median NaN NaN NaN 0 0 Median 0.95614 0.82475 NaN 1 0 Median 0.99432 1.0905 14.634 3 0 Median 1.195 1.0384 17.353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90539000 43676000 46863000 0 0 0 2849300 886130 1963200 86168000 42148000 44020000 1522000 642450 879540 0 0 0 0 0 0 13168 3435 13700;13701 66964;66965;66966;66967;66968;66969 67365;67366;67367;67368;67369;67370 67367 1725 6 HHGPQTLYLPVTLSSIPVFQR PGQGEVWYDIQSYQKHHGPQTLYLPVTLSS LYLPVTLSSIPVFQRGGTIVPRWMRVRRSS K H H Q R G 0 1 0 0 0 2 0 1 2 1 3 0 0 1 3 2 2 0 1 2 0 0 21 0 2389.2906 E9PKU7;Q14697;F5H6X6 Q14697 785 805 GANAB Neutral alpha-glucosidase AB no no 2;3;4 3.7467E-47 148.26 By MS/MS By MS/MS 4 11 0.74318 0.67084 32.616 15 Median 0.65055 0.62715 5.5289 4 2 Median 0.82613 0.71133 38.31 11 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 212280000 118790000 93489000 80547000 48375000 32172000 131740000 70419000 61317000 0 0 0 0 0 0 0 0 0 0 0 0 13169 2896;951 13702 66970;66971;66972;66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984 67371;67372;67373;67374;67375;67376;67377;67378;67379;67380;67381;67382;67383;67384;67385;67386 67376 16 HHGQEGSILVTK VICDFPFQAMVQFHRHHGQEGSILVTKVEE FHRHHGQEGSILVTKVEEPSKYGVVVCEAD R H H T K V 0 0 0 0 0 1 1 2 2 1 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1304.6837 Q9Y5P6 Q9Y5P6 126 137 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 3 0.0032932 36.303 By MS/MS 1 1.0667 0.91174 NaN 1 Median NaN NaN NaN 0 0 Median 1.0667 0.91174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1320600 688430 632150 0 0 0 1320600 688430 632150 0 0 0 0 0 0 0 0 0 0 0 0 13170 4465 13703 66985 67387 67387 1 HHGTPMLLDGVK GTCVRVTVQARVMDRHHGTPMLLDGVKCVG MDRHHGTPMLLDGVKCVGAELEYDSEHSDW R H H V K C 0 0 0 1 0 0 0 2 2 0 2 1 1 0 1 0 1 0 0 1 0 0 12 0 1303.6707 Q9GZN8;H7BYU9 Q9GZN8 144 155 C20orf27 UPF0687 protein C20orf27 yes no 3 0.0037261 35.594 By MS/MS 1 0.96857 0.9159 NaN 1 Median 0.96857 0.9159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3864400 1876700 1987700 3864400 1876700 1987700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13171 3909 13704 66986 67388 67388 1 HHIETGGGQLPAK PIAVSGVRGMGFLMRHHIETGGGQLPAKLS MRHHIETGGGQLPAKLSSLFVKCLQNPSSD R H H A K L 1 0 0 0 0 1 1 3 2 1 1 1 0 0 1 0 1 0 0 0 0 0 13 0 1343.6946 Q92616 Q92616 2538 2550 GCN1L1 Translational activator GCN1 yes yes 3 0.059286 12.42 By matching By MS/MS By matching By matching 1 3 1 1 0.99016 0.92739 14.107 6 Median 1.0329 0.99761 NaN 1 0 Median 0.9765 0.86997 4.2372 3 0 Median 0.89827 0.98491 NaN 1 0 Median 1.3263 1.2025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3792300 1857800 1934500 440930 189360 251570 2987300 1470900 1516400 297920 160140 137780 66150 37421 28730 0 0 0 0 0 0 13172 3544 13705 66987;66988;66989;66990;66991;66992 67389;67390;67391 67389 3 HHLDLGHNSQAYEALTQIPDSSR DDWKSQATLRTCIFKHHLDLGHNSQAYEAL SQAYEALTQIPDSSRQLDCLRQLVVVLCER K H H S R Q 2 1 1 2 0 2 1 1 3 1 3 0 0 0 1 3 1 0 1 0 0 0 23 0 2588.2368 Q12769;G3V198;E9PR16 Q12769 1007 1029 NUP160 Nuclear pore complex protein Nup160 yes no 3 1.5312E-37 111.66 By MS/MS 1 1.2171 1.338 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2171 1.338 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19463000 9726800 9736500 0 0 0 0 0 0 19463000 9726800 9736500 0 0 0 0 0 0 0 0 0 13173 2756 13706 66993 67392 67392 1 HHLGAATPENPEIELLR YEEPEKPNSALDFLKHHLGAATPENPEIEL LGAATPENPEIELLRLELAEMKEKYEAIVE K H H L R L 2 1 1 0 0 0 3 1 2 1 3 0 0 0 2 0 1 0 0 0 0 0 17 0 1895.9854 Q99417;A0A087WV05 Q99417 50 66 MYCBP C-Myc-binding protein yes no 3 1.5413E-07 87.566 By MS/MS 1 0.81781 0.82916 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81781 0.82916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7864800 5367200 2497600 0 0 0 0 0 0 7864800 5367200 2497600 0 0 0 0 0 0 0 0 0 13174 38 13707 66994 67393 67393 1 HHLQPENPGPGGAAPSLEQNR SESSLQKRRRKKKKKHHLQPENPGPGGAAP NPGPGGAAPSLEQNRGREPEASGLKALKAR K H H N R G 2 1 2 0 0 2 2 3 2 0 2 0 0 0 4 1 0 0 0 0 0 0 21 0 2205.0675 Q14684 Q14684 407 427 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3;4 7.4135E-12 66.045 By MS/MS By MS/MS By MS/MS 2 3 1 0.57472 0.53794 27.002 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51485 0.5468 3.4997 2 0 Median 0.62948 0.54249 15.709 3 0 Plateau 0.89167 0.92723 NaN 1 1 Median NaN NaN NaN 0 0 Median 39079000 23205000 15874000 0 0 0 0 0 0 22412000 14534000 7877800 10978000 6905000 4072900 5689100 1765900 3923100 0 0 0 13175 2890 13708 66995;66996;66997;66998;66999;67000 67394;67395;67396;67397;67398;67399;67400;67401;67402 67402 9 HHNQPYCGIAPYIR PIPYLPPLEKLPHEKHHNQPYCGIAPYIRE KHHNQPYCGIAPYIREFEDPRDAPPPTRAE K H H I R E 1 1 1 0 1 1 0 1 2 2 0 0 0 0 2 0 0 0 2 0 0 0 14 0 1724.8205 P08621 P08621 33 46 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 3 0.00024548 56.122 By MS/MS 1 0.99395 0.99866 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99395 0.99866 NaN 1 0 Median NaN NaN NaN 0 0 Median 6942100 3638200 3303900 0 0 0 0 0 0 0 0 0 0 0 0 6942100 3638200 3303900 0 0 0 13176 1905 13709 67001 67403 67403 1 HHNQSTAINLNNPESQSMHLETR KLCDNLRMHLSQIQRHHNQSTAINLNNPES NLNNPESQSMHLETRLVQLDSAISMELWQE R H H T R L 1 1 4 0 0 2 2 0 3 1 2 0 1 0 1 3 2 0 0 0 0 0 23 0 2657.2365 Q14152 Q14152 211 233 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3;4;5 2.045E-78 174.71 By MS/MS By MS/MS By MS/MS By MS/MS 8 6 1 4 0.93028 0.8056 13.796 19 Median 0.90578 0.86677 14.751 8 3 Median 0.95035 0.80661 12.791 6 0 Median 0.73262 0.8056 NaN 1 1 Median 1.0003 0.87257 17.996 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 289590000 149990000 139590000 225720000 117410000 108300000 47629000 24028000 23601000 10450000 5408100 5042300 5787300 3141600 2645700 0 0 0 0 0 0 13177 2860 13710;13711 67002;67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016;67017;67018;67019;67020 67404;67405;67406;67407;67408;67409;67410;67411;67412;67413;67414;67415;67416;67417;67418 67409 1538 14 HHPDLIFCR ______________________________ ______________________________ K H H C R K 0 1 0 1 1 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1193.5764 Q7RTV0 Q7RTV0 4 12 PHF5A PHD finger-like domain-containing protein 5A yes yes 3 0.0061929 50.04 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1125700 0 1125700 0 0 0 0 0 0 1125700 0 1125700 0 0 0 0 0 0 0 0 0 13178 3234 13712 67021 67419 67419 1 HHPNALNLQLR RDLQEFVPFGRDHCKHHPNALNLQLRQLQP DHCKHHPNALNLQLRQLQPASELWSSDGAA K H H L R Q 1 1 2 0 0 1 0 0 2 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1311.716 Q9H1A4;F8WAS1 Q9H1A4 30 40 ANAPC1 Anaphase-promoting complex subunit 1 yes no 3 4.9041E-05 93.556 By MS/MS By MS/MS 1 1 0.91091 0.8943 0.20117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81365 0.89303 NaN 1 0 Median 1.0198 0.89558 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9031500 4587400 4444100 0 0 0 0 0 0 6723500 3624000 3099500 2308000 963440 1344600 0 0 0 0 0 0 13179 3933 13713 67022;67023 67420;67421;67422 67420 3 HHPQVLSMK CTRLAGDKANYWWLRHHPQVLSMKFKTGVK NYWWLRHHPQVLSMKFKTGVKRAEISNAID R H H M K F 0 0 0 0 0 1 0 0 2 0 1 1 1 0 1 1 0 0 0 1 0 0 9 0 1075.5597 P31939;H7C1S2 P31939 469 477 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.001536 80.438 By matching By MS/MS 1 1 0.87417 0.79045 0.82181 2 Median 0.824 0.79506 NaN 1 0 Median 0.92739 0.78587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7679500 3972900 3706600 2306300 1107600 1198700 5373200 2865300 2508000 0 0 0 0 0 0 0 0 0 0 0 0 13180 2207 13714 67024;67025 67423;67424 67424 2 HHSLGGQYGVQGFPTIK ALKDVVKVGAVDADKHHSLGGQYGVQGFPT SLGGQYGVQGFPTIKIFGSNKNRPEDYQGG K H H I K I 0 0 0 0 0 2 0 4 2 1 1 1 0 1 1 1 1 0 1 1 0 0 17 0 1824.9271 Q15084 Q15084 86 102 PDIA6 Protein disulfide-isomerase A6 yes yes 3 0.057919 9.2834 By MS/MS 1 1.259 1.0732 NaN 1 Median NaN NaN NaN 0 0 Median 1.259 1.0732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3984200 1749400 2234800 0 0 0 3984200 1749400 2234800 0 0 0 0 0 0 0 0 0 0 0 0 13181 2927 13715 67026 67425 67425 1 HHSVEIKIEK KECEVKKEKLSSVDRHHSVEIKIEKTVIKK SSVDRHHSVEIKIEKTVIKKEEKIEKKEEK R H H E K T 0 0 0 0 0 0 2 0 2 2 0 2 0 0 0 1 0 0 0 1 0 0 10 1 1218.6721 Q14151 Q14151 511 520 SAFB2 Scaffold attachment factor B2 yes yes 3 0.023714 35.652 By matching By MS/MS By MS/MS 1 3 1 1.0106 1.0967 11.865 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9679 1.0967 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0106 1.1304 13.046 3 0 Median 1.0673 0.96522 NaN 1 1 Median 4622400 2306700 2315700 0 0 0 0 0 0 392630 203300 189330 0 0 0 3099400 1514600 1584800 1130400 588820 541580 13182 2859 13716 67027;67028;67029;67030;67031 67426;67427;67428 67428 3 HHVLGTITTDK YDTSSPSILTLTAIRHHVLGTITTDKMMDV TAIRHHVLGTITTDKMMDVTVTIKSSIDSE R H H D K M 0 0 0 1 0 0 0 1 2 1 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1220.6513 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7 J3KN36 666 676 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2;3 4.2577E-05 97.813 By MS/MS By MS/MS By matching By MS/MS By matching 3 5 1 2 1 1.1943 0.97164 27.623 12 Plateau 1.3082 1.2995 24.922 3 0 Plateau 1.1594 0.97944 9.095 5 0 Median 1.15 1.4527 NaN 1 0 Median 0.98898 0.86683 10.654 2 0 Median NaN NaN NaN 0 0 Median 0.59053 0.50343 NaN 1 0 Median 28559000 12951000 15608000 2772100 1226800 1545300 24255000 10989000 13266000 786190 372060 414130 550730 244080 306650 0 0 0 194790 119000 75786 13183 117;1301 13717 67032;67033;67034;67035;67036;67037;67038;67039;67040;67041;67042;67043 67429;67430;67431;67432;67433;67434;67435;67436;67437;67438;67439;67440;67441 67437 13 HHVLQNDVLAHQSTVEAVNK PVGGDPKAIEIELAKHHVLQNDVLAHQSTV NDVLAHQSTVEAVNKAGNDLIESSAGEEAS K H H N K A 2 0 2 1 0 2 1 0 3 0 2 1 0 0 0 1 1 0 0 4 0 0 20 0 2238.1505 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4334 4353 DST Dystonin yes no 4 1.1994E-10 89.011 By MS/MS By MS/MS 1 1 1.0503 1.0284 17.44 2 Median NaN NaN NaN 0 0 Median 1.0202 0.90909 NaN 1 0 Median 1.0813 1.1634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27192000 12994000 14198000 0 0 0 22051000 10638000 11413000 5141400 2355800 2785600 0 0 0 0 0 0 0 0 0 13184 934 13718 67044;67045 67442;67443 67443 2 HHVLQTAHPSPLSVYR GSYAQKKGSAIDRKRHHVLQTAHPSPLSVY HVLQTAHPSPLSVYRGFFGCRHFSKTNELL R H H Y R G 1 1 0 0 0 1 0 0 3 0 2 0 0 0 2 2 1 0 1 2 0 0 16 0 1840.9696 P13051 P13051 270 285 UNG Uracil-DNA glycosylase yes yes 3;4 2.4395E-10 138.77 By matching By MS/MS By MS/MS By MS/MS 1 2 3 4 0.76 0.71888 17.7 10 Median 0.55346 0.53692 NaN 1 0 Median 0.80993 0.695 6.8468 2 1 Median 0.75067 0.73033 8.1946 3 0 Median 0.879 0.73612 23.824 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56557000 30940000 25617000 1923400 1279300 644160 2765400 1489300 1276100 27969000 15915000 12054000 23900000 12257000 11642000 0 0 0 0 0 0 13185 1987 13719 67046;67047;67048;67049;67050;67051;67052;67053;67054;67055 67444;67445;67446;67447;67448;67449;67450;67451;67452;67453;67454;67455;67456;67457 67450 13 HHYEQQQEDLAR QEESVDPDYWEKLLRHHYEQQQEDLARNLG LLRHHYEQQQEDLARNLGKGKRIRKQVNYN R H H A R N 1 1 0 1 0 3 2 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 12 0 1552.7019 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8YE38;Q8TDI0;K7EMY3;Q12873 Q14839 1320 1331 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 3 0.0002222 60.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.1016 1.0451 8.5758 10 Median NaN NaN NaN 0 0 Median 1.1491 1.0054 20.078 2 0 Median 1.0113 1.094 5.6276 2 0 Median 1.216 1.0389 2.1993 3 0 Median 1.0002 1.0552 7.1308 2 0 Median 1.1466 0.94693 NaN 1 0 Median 12979000 5904900 7073900 0 0 0 793280 349930 443350 6857100 3156700 3700400 1937000 816670 1120300 2996900 1369100 1627800 394580 212490 182090 13186 246;3471;2766 13720 67056;67057;67058;67059;67060;67061;67062;67063;67064;67065 67458;67459;67460;67461;67462;67463;67464 67460 7 HIADLAGNSEVILPVPAFNVINGGSHAGNK VCKAGAVEKGVPLYRHIADLAGNSEVILPV PAFNVINGGSHAGNKLAMQEFMILPVGAAN R H I N K L 4 0 4 1 0 0 1 4 2 3 2 1 0 1 2 2 0 0 0 3 0 0 30 0 3010.5625 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5 P06733 133 162 ENO1 Alpha-enolase;Enolase yes no 3;4 5.9565E-63 162.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 1 0.80282 0.72026 18.357 10 Median 0.82146 0.7484 5.6854 2 0 Median 0.80251 0.67566 21.097 5 0 Median 0.89409 0.85359 18.47 2 0 Median 0.80312 0.72161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 661280000 350890000 310400000 369550000 196500000 173050000 163180000 85518000 77660000 119450000 64502000 54952000 9105100 4370500 4734600 0 0 0 0 0 0 13187 1873 13721 67066;67067;67068;67069;67070;67071;67072;67073;67074;67075 67465;67466;67467;67468;67469;67470;67471;67472;67473;67474;67475;67476;67477;67478;67479;67480;67481;67482 67475 18 HIAEEADRKYEEVAR EEKMELQEIQLKEAKHIAEEADRKYEEVAR HIAEEADRKYEEVARKLVIIEGDLERTEER K H I A R K 3 2 0 1 0 0 4 0 1 1 0 1 0 0 0 0 0 0 1 1 0 0 15 2 1814.8911 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 117 131 TPM3;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 3;4 7.8344E-15 179.39 By MS/MS By MS/MS By MS/MS 2 2 2 1.073 1.0827 7.171 6 Median 0.98704 1.0345 12.118 2 0 Median 1.1211 1.0383 9.0533 2 0 Median NaN NaN NaN 0 0 Median 1.1497 1.0827 1.6285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57622000 25935000 31687000 19409000 8817100 10592000 34577000 15529000 19048000 0 0 0 3636100 1588600 2047500 0 0 0 0 0 0 13188 63;1303;2629 13722 67076;67077;67078;67079;67080;67081 67483;67484;67485;67486;67487;67488;67489;67490;67491;67492;67493;67494 67489 11 HIAEVSQEVTR LLDEDDDLWIALRHKHIAEVSQEVTRSLKD LRHKHIAEVSQEVTRSLKDFSSSKRMNTGE K H I T R S 1 1 0 0 0 1 2 0 1 1 0 0 0 0 0 1 1 0 0 2 0 0 11 0 1267.6521 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;A0A1B0GW76 A0A1B0GWF2 295 305 STXBP1 Syntaxin-binding protein 1 yes no 2 0.0004849 68.735 By MS/MS By MS/MS By matching 1 1 1 1.4673 1.3394 40.237 2 Median NaN NaN NaN 0 0 Median 2.0532 1.7802 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0486 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4597300 1530400 3066900 0 0 0 4056700 1225300 2831300 0 0 0 540600 305090 235510 0 0 0 0 0 0 13189 271 13723 67082;67083;67084 67495;67496 67496 2 HIAFSGNKWEQK ALSDCGDHVVIMNTRHIAFSGNKWEQKVYS NTRHIAFSGNKWEQKVYSSHTGYPGGFRQV R H I Q K V 1 0 1 0 0 1 1 1 1 1 0 2 0 1 0 1 0 1 0 0 0 0 12 1 1443.7259 Q9BYD1;E5RJI7 Q9BYD1 64 75 MRPL13 39S ribosomal protein L13, mitochondrial yes no 3 0.0002396 61.344 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.6061 1.4201 59.988 5 Median 1.258 1.3 117.71 2 0 Median 1.6061 1.4201 NaN 1 0 Median 1.2799 1.282 NaN 1 0 Median 1.8765 1.6884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17881000 5384200 12496000 11015000 2861800 8152700 2237700 733940 1503700 3211900 1283700 1928200 1416600 504710 911880 0 0 0 0 0 0 13190 3888 13724 67085;67086;67087;67088;67089 67497;67498;67499;67500 67500 4 HIAFTPESQR FDDGGSDEEDIWEEKHIAFTPESQRRSSSG IWEEKHIAFTPESQRRSSSGSTDSEESTDS K H I Q R R 1 1 0 0 0 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 10 0 1184.5938 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;H0YEN2 H7BXH2 581 590 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2 0.0014621 65.305 By MS/MS 1 0.93137 0.78404 NaN 1 Median NaN NaN NaN 0 0 Median 0.93137 0.78404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5941300 2921000 3020300 0 0 0 5941300 2921000 3020300 0 0 0 0 0 0 0 0 0 0 0 0 13191 946 13725 67090 67501 67501 1 HIAFTPESQRR FDDGGSDEEDIWEEKHIAFTPESQRRSSSG WEEKHIAFTPESQRRSSSGSTDSEESTDSE K H I R R S 1 2 0 0 0 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 11 1 1340.6949 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;H0YEN2 H7BXH2 581 591 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 3 0.070713 8.7293 By MS/MS 1 0.88619 0.98458 NaN 1 Median 0.88619 0.98458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 459630 218550 241080 459630 218550 241080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13192 946 13726 67091 67502;67503 67503 2 HIANLGVISQN MDHPWNCPHGRPTMRHIANLGVISQN____ PTMRHIANLGVISQN_______________ R H I Q N - 1 0 2 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1164.6251 A0A2R8Y6S3;C9J167;P54278 A0A2R8Y6S3 717 727 PMS2 Mismatch repair endonuclease PMS2 yes no 2 0.026602 50.607 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031200 0 0 0 0 0 0 0 0 3031200 0 0 0 0 0 0 0 0 0 0 0 13193 376 13727 67092 67504 67504 1 HIANYISGIQTIGHR YDLGKKKLLRKCENKHIANYISGIQTIGHR HIANYISGIQTIGHRVIVSDVQESFIWVRY K H I H R V 1 1 1 0 0 1 0 2 2 4 0 0 0 0 0 1 1 0 1 0 0 0 15 0 1678.8903 Q15393 Q15393 985 999 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3;4 6.4381E-15 179.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 2 7 4 2 1 1.0562 1.0776 16.337 19 Median 0.95307 0.90653 7.8833 4 0 Median 1.0403 0.84754 8.9437 2 0 Median 1.0537 1.1351 16.724 7 0 Median 1.242 1.0876 10.09 4 0 Median 1.207 1.2066 NaN 1 1 Median 1.254 1.0787 NaN 1 0 Median 325690000 160140000 165550000 62164000 33309000 28854000 86762000 41961000 44802000 145130000 70373000 74754000 19928000 9181500 10746000 9846000 4591800 5254100 1858800 721600 1137200 13194 2946 13728 67093;67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108;67109;67110;67111;67112;67113 67505;67506;67507;67508;67509;67510;67511;67512;67513;67514;67515;67516;67517;67518;67519;67520;67521;67522;67523;67524;67525;67526;67527 67519 23 HIDALEDKIDEEVRR VKYQLEKTQRFLKERHIDALEDKIDEEVRR HIDALEDKIDEEVRRFRETRQKNTNEEDDE R H I R R F 1 2 0 3 0 0 3 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 15 2 1836.933 P49959;F8W7U8 P49959 489 503 MRE11A Double-strand break repair protein MRE11A yes no 4 8.1995E-05 69.92 By MS/MS By MS/MS 1 1 0.99238 1.1369 6.2348 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96966 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0156 1.1881 NaN 1 1 Median NaN NaN NaN 0 0 Median 26138000 11253000 14885000 0 0 0 0 0 0 17157000 7071200 10085000 0 0 0 8981400 4181400 4800000 0 0 0 13195 2407 13729 67114;67115 67528;67529 67528 2 HIDFSLR VVNIPSFIVRLDSQKHIDFSLRSPYGGGRP IVRLDSQKHIDFSLRSPYGGGRPGRVKRKN K H I L R S 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 886.4661 P46781 P46781 156 162 RPS9 40S ribosomal protein S9 yes yes 2 1.7394E-28 187.14 By MS/MS By MS/MS By MS/MS 2 1 3 1.2745 1.205 35.06 5 Median 1.7218 1.6669 58.485 2 2 Median 1.2745 1.0806 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2397 1.2838 8.9577 2 2 Median NaN NaN NaN 0 0 Median 300600000 133330000 167270000 239180000 107020000 132170000 4497400 1994200 2503200 0 0 0 0 0 0 56923000 24321000 32602000 0 0 0 13196 2345 13730 67116;67117;67118;67119;67120;67121 67530;67531;67532;67533;67534;67535 67533 6 HIDLQFSYAPR TACHSRSRAEARQNRHIDLQFSYAPRHSRR RQNRHIDLQFSYAPRHSRRNEGVVGGEDYE R H I P R H 1 1 0 1 0 1 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 0 11 0 1345.6779 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 282 292 ZNF598 Zinc finger protein 598 yes no 2 0.034503 47.198 By MS/MS 1 0.91566 0.78115 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91566 0.78115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1044600 448320 596240 0 0 0 0 0 0 0 0 0 1044600 448320 596240 0 0 0 0 0 0 13197 3278 13731 67122 67536 67536 1 HIDLVEGDEGR IIGTGTNACYMEELRHIDLVEGDEGRMCIN EELRHIDLVEGDEGRMCINTEWGAFGDDGS R H I G R M 0 1 0 2 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1238.5891 P19367 P19367 244 254 HK1 Hexokinase-1 yes yes 2;3 4.2341E-05 122.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1.3323 1.2559 20.272 8 Median 1.2025 1.168 3.2941 2 0 Median 1.5403 1.3093 5.7765 2 0 Median 1.1702 1.2549 NaN 1 1 Median 1.7769 1.5133 36.699 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42724000 17622000 25102000 17876000 8233700 9641900 18937000 7163900 11773000 1538200 579980 958240 4373200 1644300 2729000 0 0 0 0 0 0 13198 2064 13732 67123;67124;67125;67126;67127;67128;67129;67130 67537;67538;67539;67540;67541;67542;67543;67544;67545;67546;67547 67540 11 HIDMVEGDEGR IVGTGSNACYMEEMRHIDMVEGDEGRMCIN EEMRHIDMVEGDEGRMCINMEWGAFGDDGS R H I G R M 0 1 0 2 0 0 2 2 1 1 0 0 1 0 0 0 0 0 0 1 0 0 11 0 1256.5455 E9PB90;P52789 E9PB90 216 226 HK2 Hexokinase;Hexokinase-2 yes no 2 0.01947 70.056 By MS/MS 1 1.2092 1.0757 NaN 1 Median NaN NaN NaN 0 0 Median 1.2092 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1144000 374460 769500 0 0 0 1144000 374460 769500 0 0 0 0 0 0 0 0 0 0 0 0 13199 908 13733 67131 67548 67548 0 HIDPVVLK DAQADEAVLDHPDLKHIDPVVLKHCHAAAA LDHPDLKHIDPVVLKHCHAAAATYILEAGK K H I L K H 0 0 0 1 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 2 0 0 8 0 919.5491 H0Y4W0;Q9UBI1;R4GN54;R4GMW6;H0Y6Z9;R4GMX3 R4GMX3 53 60 COMMD3;COMMD3-BMI1 COMM domain-containing protein 3 no no 2 0.0041257 83.377 By MS/MS By matching By matching 1 1 1 0.77467 0.82328 52.934 3 Median 0.72362 0.69038 NaN 1 0 Median 2.229 1.8619 NaN 1 0 Median 0.77467 0.82328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4909700 2624800 2284900 2121300 1286300 834940 687220 207660 479560 2101200 1130800 970380 0 0 0 0 0 0 0 0 0 13200 4503;1149 13734 67132;67133;67134 67549;67550 67550 2 HIEEDEVR KRANNVRNKLKSMEKHIEEDEVRSSADLRI KLKSMEKHIEEDEVRSSADLRIRKSQHSVL K H I V R S 0 1 0 1 0 0 3 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 1025.4778 A0A0C4DGE4;A0A286YF28;A0A0J9YW33;Q13277 A0A0C4DGE4 53 60 STX3 Syntaxin-3 yes no 2 0.022726 44.692 By MS/MS By MS/MS 1 1 1.1054 1.0041 3.9232 2 Median 1.0178 0.97662 NaN 1 0 Median 1.2007 1.0323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 948470 444260 504210 470540 223200 247330 477930 221060 256870 0 0 0 0 0 0 0 0 0 0 0 0 13201 243 13735 67135;67136 67551;67552;67553;67554 67552 4 HIEEGLGR PSPVVLKVYKNELHRHIEEGLGRNMSDRCS YKNELHRHIEEGLGRNMSDRCSTAITNSLQ R H I G R N 0 1 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 909.46683 O95140 O95140 469 476 MFN2 Mitofusin-2 yes yes 2 0.066471 31.229 By matching By MS/MS By matching 1 1 1 1.5714 1.3898 45.199 3 Median 1.2377 1.2381 NaN 1 0 Median 1.5714 1.3898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.598 2.8513 NaN 1 0 Median NaN NaN NaN 0 0 Median 2577300 832970 1744300 292580 128570 164010 1264600 523260 741300 0 0 0 0 0 0 1020200 181150 839010 0 0 0 13202 1747 13736 67137;67138;67139 67555 67555 1 HIEHMESDELGLQK EARGLLLATKNSHLRHIEHMESDELGLQKK RHIEHMESDELGLQKKLRTEVIQLEDTLAQ R H I Q K K 0 0 0 1 0 1 3 1 2 1 2 1 1 0 0 1 0 0 0 0 0 0 14 0 1664.7828 O75150;H3BP71 O75150 426 439 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 2.3311E-09 118.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1692 1.1275 19.294 4 Median 0.84005 0.84521 NaN 1 1 Median 1.4915 1.2988 NaN 1 0 Median 1.1384 1.2259 NaN 1 0 Median 1.2008 1.037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15807000 7025300 8781400 1576100 702050 874050 2918200 1050600 1867600 6541800 3105000 3436800 4770600 2167700 2602900 0 0 0 0 0 0 13203 1648 13737 67140;67141;67142;67143 67556;67557;67558;67559;67560 67560 5 HIEHMESDELGLQKK EARGLLLATKNSHLRHIEHMESDELGLQKK HIEHMESDELGLQKKLRTEVIQLEDTLAQV R H I K K L 0 0 0 1 0 1 3 1 2 1 2 2 1 0 0 1 0 0 0 0 0 0 15 1 1792.8778 O75150;H3BP71 O75150 426 440 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 4 0.023466 18.138 By MS/MS 1 0.998 1.142 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.998 1.142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2364900 1176600 1188300 0 0 0 0 0 0 2364900 1176600 1188300 0 0 0 0 0 0 0 0 0 13204 1648 13738 67144 67561;67562 67561 2 HIEIFTDLSSR DVIQHETIGKKFEKRHIEIFTDLSSRFSKS FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK R H I S R F 0 1 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1316.6725 P13010;C9JZ81 P13010 131 141 XRCC5 X-ray repair cross-complementing protein 5 yes no 2;3 5.4569E-19 161.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1 1.1318 1.0693 21.621 11 Median 0.98686 0.94672 17.215 2 0 Median 1.4245 1.2653 13.991 2 0 Median 0.93718 0.98828 23.244 3 1 Median 1.5719 1.3415 23.658 2 0 Median 1.0203 1.0423 NaN 1 1 Median 0.99835 0.85795 NaN 1 0 Median 448290000 216510000 231780000 119700000 54217000 65488000 53197000 22745000 30452000 218820000 115440000 103380000 45821000 19232000 26588000 9847800 4479600 5368300 904680 401090 503600 13205 1986 13739 67145;67146;67147;67148;67149;67150;67151;67152;67153;67154;67155 67563;67564;67565;67566;67567;67568;67569;67570;67571;67572;67573;67574;67575;67576;67577;67578;67579 67569 16 HIEIRDQALSNAQAK AELATARSTNEDQRRHIEIRDQALSNAQAK HIEIRDQALSNAQAKVVKLEEELKKKQVYV R H I A K V 3 1 1 1 0 2 1 0 1 2 1 1 0 0 0 1 0 0 0 0 0 0 15 1 1692.8907 A6NP16;E7ERM3;Q4VCS5 A6NP16 339 353 AMOT Angiomotin yes no 2 0.0009883 73.885 By MS/MS 1 0.84046 0.95231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84046 0.95231 NaN 1 0 Median NaN NaN NaN 0 0 Median 49439000 26371000 23068000 0 0 0 0 0 0 0 0 0 0 0 0 49439000 26371000 23068000 0 0 0 13206 531 13740 67156 67580 67580 1 HIESMIR RKESMATGSIPITVRHIESMIRMAEAHARI GSIPITVRHIESMIRMAEAHARIHLRDYVI R H I I R M 0 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 7 0 884.45382 P49736;H0Y8E6 P49736 766 772 MCM2 DNA replication licensing factor MCM2 yes no 2 0.0030939 105.2 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.137 0.93825 30.397 5 Median 0.91441 0.88419 NaN 1 0 Median 1.2259 1.0366 14.102 2 0 Median 0.70423 0.77085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9439 1.6865 NaN 1 0 Median 50872000 23498000 27375000 4742500 2435300 2307200 43441000 19571000 23870000 2306900 1378400 928520 0 0 0 0 0 0 382270 113400 268870 13207 2393 13741 67157;67158;67159;67160;67161 67581;67582;67583;67584;67585 67584 5 HIEVQVAQETR FVKVTDAPNKSEISKHIEVQVAQETRNVST EISKHIEVQVAQETRNVSTGSAENEEKSEV K H I T R N 1 1 0 0 0 2 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1308.6786 A0A087X2D8;O60271 A0A087X2D8 302 312 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 3.6843E-05 140.75 By MS/MS By MS/MS By MS/MS 4 4 1 1.2214 1.0475 8.8811 9 Median 1.154 1.1428 5.9831 4 0 Median 1.303 1.0155 5.6522 4 1 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2291 1.0105 NaN 1 1 Median 66662000 29462000 37200000 22069000 10364000 11705000 44106000 18912000 25194000 0 0 0 0 0 0 0 0 0 486740 185290 301450 13208 134 13742 67162;67163;67164;67165;67166;67167;67168;67169;67170 67586;67587;67588;67589;67590;67591;67592;67593;67594;67595;67596;67597;67598 67588 13 HIFENVIGPK LFDDPLSAVDAHVGKHIFENVIGPKGMLKN AHVGKHIFENVIGPKGMLKNKTRILVTHSM K H I P K G 0 0 1 0 0 0 1 1 1 2 0 1 0 1 1 0 0 0 0 1 0 0 10 0 1152.6291 A0A0A0MS99;I3L4X2;P33527 A0A0A0MS99 479 488 ABCC1 Multidrug resistance-associated protein 1 yes no 2 0.00035174 93.649 By MS/MS 1 0.96204 0.85033 NaN 1 Median NaN NaN NaN 0 0 Median 0.96204 0.85033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10626000 5963500 4662700 0 0 0 10626000 5963500 4662700 0 0 0 0 0 0 0 0 0 0 0 0 13209 178 13743 67171 67599;67600 67600 2 HIFPASR HAGKVVLRSWYEKNKHIFPASRWEPYDPEK RSWYEKNKHIFPASRWEPYDPEKKWDKYTI K H I S R W 1 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 7 0 826.44497 Q14320;Q9Y247 Q14320 317 323 FAM50A;FAM50B Protein FAM50A;Protein FAM50B no no 2 0.022813 57.463 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.0773 0.99527 6.6265 4 Median 1.0026 1.0166 NaN 1 0 Median 1.1429 0.97439 NaN 1 0 Median 1.0552 1.1041 NaN 1 0 Median 1.0998 0.94875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3272500 1569800 1702700 284280 133750 150530 1534700 728370 806330 941960 462770 479200 511520 244900 266620 0 0 0 0 0 0 13210 2873;4373 13744 67172;67173;67174;67175 67601;67602 67601 2 HIGFVYHPTK ALQKLAPDRESLLLKHIGFVYHPTKETCLS SLLLKHIGFVYHPTKETCLSGQNCTDIKVE K H I T K E 0 0 0 0 0 0 0 1 2 1 0 1 0 1 1 0 1 0 1 1 0 0 10 0 1197.6295 Q13017;A0A0A0MSK6 Q13017 545 554 ARHGAP5 Rho GTPase-activating protein 5 yes no 3 0.0026075 44.98 By matching By MS/MS 1 1 1.2691 1.2747 35.271 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4745 1.6358 NaN 1 0 Median 1.0923 0.99334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2610500 1327900 1282600 0 0 0 0 0 0 1271000 552540 718440 1339500 775390 564160 0 0 0 0 0 0 13211 183 13745 67176;67177 67603;67604 67604 2 HIGISFTPK SGNEEPCLLKRLPNRHIGISFTPKEVGEHV KRLPNRHIGISFTPKEVGEHVVSVRKSGKH R H I P K E 0 0 0 0 0 0 0 1 1 2 0 1 0 1 1 1 1 0 0 0 0 0 9 0 998.55492 Q14315 Q14315 2000 2008 FLNC Filamin-C yes yes 2 3.2827E-23 198.87 By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 0.99469 0.87503 20.694 8 Median 1.1396 1.121 13.719 2 0 Median 1.0234 0.92121 3.1521 3 1 Plateau NaN NaN NaN 0 0 Median 0.82755 0.80727 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80721 0.67857 14.023 2 0 Median 213990000 103620000 110370000 51935000 23736000 28199000 152870000 74962000 77907000 0 0 0 4123600 2368300 1755200 0 0 0 5066400 2556300 2510100 13212 2871 13746 67178;67179;67180;67181;67182;67183;67184;67185 67605;67606;67607;67608;67609;67610;67611;67612;67613;67614;67615 67609 11 HIGKPLLGGPFSLTTHTGER VKKEKAEKLEKERQRHIGKPLLGGPFSLTT LLGGPFSLTTHTGERKTDKDYLDSITTLPD R H I E R K 0 1 0 0 0 0 1 4 2 1 3 1 0 1 2 1 3 0 0 0 0 0 20 1 2117.1382 J3QL56;O75880 J3QL56 130 149 SCO1 Protein SCO1 homolog, mitochondrial yes no 4 1.6947E-10 86.479 By MS/MS By MS/MS By matching 1 1 1 1.2634 1.1178 26.655 3 Median 0.88095 0.91793 NaN 1 0 Median 1.6731 1.5556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2634 1.1178 NaN 1 0 Median 33405000 17806000 15599000 25215000 13595000 11620000 4014800 1710100 2304700 0 0 0 0 0 0 0 0 0 4175600 2501400 1674200 13213 1339 13747 67186;67187;67188 67616;67617;67618 67616 3 HIGLVYSGMGPDYR LYDERSVHKVEPITKHIGLVYSGMGPDYRV KHIGLVYSGMGPDYRVLVHRARKLAQQYYL K H I Y R V 0 1 0 1 0 0 0 3 1 1 1 0 1 0 1 1 0 0 2 1 0 0 14 0 1563.7504 A0A024RA52;P25787 A0A024RA52 71 84 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2;3 1.2369E-07 117.2 By MS/MS By MS/MS By matching By matching 4 4 3 1 1.0255 0.90858 56.389 12 Median 0.97955 0.93193 7.714 4 0 Median 0.7623 0.67672 47.362 4 1 Median 2.4442 2.5331 61.997 3 0 Plateau 1.3625 1.1222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 236250000 118700000 117550000 172410000 88125000 84290000 49090000 25517000 23573000 14155000 4761700 9393100 590100 298730 291370 0 0 0 0 0 0 13214 7 13748;13749 67189;67190;67191;67192;67193;67194;67195;67196;67197;67198;67199;67200 67619;67620;67621;67622;67623;67624;67625;67626;67627;67628;67629 67624 4 11 HIGPLLER AMVEGVSSCQDLYRKHIGPLLERVTASHLD CQDLYRKHIGPLLERVTASHLDWTAHSPEL K H I E R V 0 1 0 0 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 0 0 0 8 0 933.5396 Q86Y56;H0Y650 Q86Y56 562 569 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.024816 57.281 By MS/MS By MS/MS 1 1 0.89953 0.82946 29.474 2 Median 0.68627 0.67342 NaN 1 0 Median 1.1791 1.0217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6324500 3235900 3088600 2527800 1410900 1116900 3796700 1825000 1971700 0 0 0 0 0 0 0 0 0 0 0 0 13215 3305 13750 67201;67202 67630;67631;67632 67631 3 HIGTSALMDLLLR TFLKKKDKFISLVLKHIGTSALMDLLLRLV LKHIGTSALMDLLLRLVSCVEPAGLRQDVL K H I L R L 1 1 0 1 0 0 0 1 1 1 4 0 1 0 0 1 1 0 0 0 0 0 13 0 1438.7966 O75170 O75170 156 168 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 yes yes 2 0.0013302 55.567 By MS/MS By matching 2 1 1.0252 0.92456 11.394 3 Median NaN NaN NaN 0 0 Median 1.1342 0.97429 15.536 2 0 Median 0.89411 0.92456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6141500 2982200 3159300 0 0 0 5926000 2865600 3060500 215410 116600 98810 0 0 0 0 0 0 0 0 0 13216 1654 13751 67203;67204;67205 67633;67634 67634 2 HIGVGMYQHDVSQTLLK RVQDPLAELVKIEPKHIGVGMYQHDVSQTL GVGMYQHDVSQTLLKATLDSVVEECVSFVG K H I L K A 0 0 0 1 0 2 0 2 2 1 2 1 1 0 0 1 1 0 1 2 0 0 17 0 1924.9829 Q8N5C6 Q8N5C6 676 692 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 0.0002834 52.254 By MS/MS 1 1.3926 1.484 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3926 1.484 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23144000 9300600 13844000 0 0 0 0 0 0 23144000 9300600 13844000 0 0 0 0 0 0 0 0 0 13217 3377 13752 67206 67635 67635 1 HIGYDDSSK RAAVDYQKVVREAVKHIGYDDSSKGFDYKT VREAVKHIGYDDSSKGFDYKTCNVLVALEQ K H I S K G 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 2 0 0 1 0 0 0 9 0 1020.4512 P31153 P31153 89 97 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 0.01817 41.029 By MS/MS 1 1.3274 1.1552 NaN 1 Median NaN NaN NaN 0 0 Median 1.3274 1.1552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 742020 344050 397970 0 0 0 742020 344050 397970 0 0 0 0 0 0 0 0 0 0 0 0 13218 2202 13753 67207 67636 67636 1 HIGYDDSSKGFDYK RAAVDYQKVVREAVKHIGYDDSSKGFDYKT KHIGYDDSSKGFDYKTCNVLVALEQQSPDI K H I Y K T 0 0 0 3 0 0 0 2 1 1 0 2 0 1 0 2 0 0 2 0 0 0 14 1 1630.7264 P31153 P31153 89 102 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 3 0.031514 19.754 By MS/MS 1 1.1505 1.0752 NaN 1 Median 1.1505 1.0752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3646800 1562600 2084300 3646800 1562600 2084300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13219 2202 13754 67208 67637;67638 67637 2 HIHITQATETTTTR PKGEFKDEEETVTTKHIHITQATETTTTRH KHIHITQATETTTTRHKRTANPSKTIDLGA K H I T R H 1 1 0 0 0 1 1 0 2 2 0 0 0 0 0 0 6 0 0 0 0 0 14 0 1608.822 Q14677 Q14677 261 274 CLINT1 Clathrin interactor 1 yes yes 2;3 5.0195E-07 122.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 5 3 2 1.292 1.18 20.938 23 Median 0.93362 0.94592 9.4986 5 0 Median 1.3422 1.1707 26.342 6 1 Median 1.2827 1.3381 13.798 2 0 Median 1.5209 1.3309 16.193 5 0 Median 1.338 1.414 3.2765 3 0 Median 1.2851 1.0796 12.573 2 0 Median 53641000 24971000 28670000 11269000 5718500 5550300 20235000 9348600 10887000 12452000 5627300 6824400 3038700 1187000 1851700 5348700 2573600 2775100 1297600 516260 781380 13220 2888 13755 67209;67210;67211;67212;67213;67214;67215;67216;67217;67218;67219;67220;67221;67222;67223;67224;67225;67226;67227;67228;67229;67230;67231 67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650;67651;67652;67653;67654;67655;67656;67657;67658;67659;67660;67661 67649 23 HIIEDPCTLR SGFNGFTPLVTLLLRHIIEDPCTLRHTMEK TLLLRHIIEDPCTLRHTMEKVVRSAATSGA R H I L R H 0 1 0 1 1 0 1 0 1 2 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1252.6234 Q7Z6Z7 Q7Z6Z7 1826 1835 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 0.00010226 124.23 By MS/MS 2 1.2066 0.97826 14.424 2 Median NaN NaN NaN 0 0 Median 1.2066 0.97826 14.424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32240000 15557000 16683000 0 0 0 32240000 15557000 16683000 0 0 0 0 0 0 0 0 0 0 0 0 13221 3253 13756 67232;67233 67662;67663;67664 67664 3 HIIEDTEEAR VEERLEYALVKGIEKHIIEDTEEARLNQKK KGIEKHIIEDTEEARLNQKKYPRPLNIIEG K H I A R L 1 1 0 1 0 0 3 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1211.5782 Q99707;B1ANE3 Q99707 686 695 MTR Methionine synthase yes no 2 0.0014621 65.305 By matching By MS/MS 1 1 0.98037 0.90782 16.81 2 Median 0.79813 0.80608 NaN 1 0 Median 1.2042 1.0224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4214700 2093300 2121400 391010 230240 160770 3823700 1863000 1960600 0 0 0 0 0 0 0 0 0 0 0 0 13222 3763 13757 67234;67235 67665 67665 1 HIIENAKQDVDDEYGVSQALAR IPDPDSDDVSEVDARHIIENAKQDVDDEYG QDVDDEYGVSQALARGLQSYYAVAHAVTER R H I A R G 3 1 1 3 0 2 2 1 1 2 1 1 0 0 0 1 0 0 1 2 0 0 22 1 2470.2088 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1 P51532 705 726 SMARCA4 Transcription activator BRG1 yes no 3;4 1.7175E-27 155.87 By MS/MS 2 0.92917 1.1134 12.655 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92917 1.1134 12.655 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49069000 23946000 25122000 0 0 0 0 0 0 49069000 23946000 25122000 0 0 0 0 0 0 0 0 0 13223 366 13758 67236;67237 67666;67667;67668;67669 67667 4 HIILVLSGK ______________________________ NLAGVRHIILVLSGKGGVGKSTISTELALA R H I G K G 0 0 0 0 0 0 0 1 1 2 2 1 0 0 0 1 0 0 0 1 0 0 9 0 978.6226 Q9Y5Y2;H3BNF0;H3BRK5;H3BMW1;H3BNS4 Q9Y5Y2 15 23 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.00042096 130.22 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1.1965 0.99397 43.811 6 Median 1.1256 1.0483 13.139 2 0 Median 1.2051 1.0059 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0849 0.89406 NaN 1 0 Median 2.797 2.8514 NaN 1 0 Median 1.188 0.9822 NaN 1 0 Median 55518000 25518000 29999000 30640000 14246000 16394000 16069000 7678900 8390500 0 0 0 466070 207690 258380 2226500 652160 1574300 6115700 2733800 3381900 13224 4472 13759 67238;67239;67240;67241;67242;67243 67670;67671;67672;67673;67674;67675;67676;67677 67675 8 HIISHLFSQPK PQTIVELFFQEVARKHIISHLFSQPKAPLS VARKHIISHLFSQPKAPLSQTGLNWPEMIT K H I P K A 0 0 0 0 0 1 0 0 2 2 1 1 0 1 1 2 0 0 0 0 0 0 11 0 1305.7194 Q12769;G3V198;E9PR16 Q12769 834 844 NUP160 Nuclear pore complex protein Nup160 yes no 2;3 3.9862E-05 114.89 By MS/MS By MS/MS 2 2 1.0152 0.97594 9.549 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89023 0.95528 9.2651 2 0 Median 1.1949 1.0176 12.155 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21913000 11526000 10386000 0 0 0 0 0 0 15629000 8382100 7247300 6283500 3144400 3139100 0 0 0 0 0 0 13225 2756 13760 67244;67245;67246;67247 67678;67679;67680;67681 67679 4 HIITVDGKPPTWSEFPK QTKLKDIVSLVPRLRHIITVDGKPPTWSEF ITVDGKPPTWSEFPKGIIVHTMAAVEALGA R H I P K G 0 0 0 1 0 0 1 1 1 2 0 2 0 1 3 1 2 1 0 1 0 0 17 1 1951.0203 O95573;F5GWH2 O95573 233 249 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes no 3 0.0020296 27.85 By MS/MS By matching By matching 1 2 1 0.80096 0.75991 70.859 4 Median 0.36979 0.38168 NaN 1 0 Median 0.80096 0.75991 47.129 2 0 Median 1.6627 1.8814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9902000 4926000 4976000 3556500 2385300 1171200 3062200 1847200 1215000 3283400 693560 2589800 0 0 0 0 0 0 0 0 0 13226 1780 13761 67248;67249;67250;67251 67682 67682 1 HIKENDYYTPTGEFR FLWMVRIGGSTDTGKHIKENDYYTPTGEFR HIKENDYYTPTGEFRVDREGSPVLLNCLMY K H I F R V 0 1 1 1 0 0 2 1 1 1 0 1 0 1 1 0 2 0 2 0 0 0 15 1 1868.8693 P46977 P46977 611 625 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 3 5.1555E-10 104.55 By MS/MS By MS/MS By MS/MS 2 1 1 0.89105 0.97966 6.6383 4 Median 0.88539 0.92491 1.5018 2 2 Median 1.1374 1.0451 NaN 1 0 Median 0.8877 1.0267 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75864000 36594000 39269000 37775000 18573000 19203000 34926000 16590000 18336000 3162400 1431200 1731200 0 0 0 0 0 0 0 0 0 13227 2352 13762 67252;67253;67254;67255 67683;67684;67685;67686;67687 67687 5 HILANFK ERVKPFMTGAAEQIKHILANFKNYQFFIGE TGAAEQIKHILANFKNYQFFIGENMNPDGM K H I F K N 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7;Q56UQ5;H0YCX0 Q5W0H4 124 130 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 2 3.9575E-06 158.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 2 1.1908 1.0949 16.578 9 Median 1.285 1.2004 12.517 2 0 Median 1.1007 0.92268 16.576 3 0 Median 1.3313 1.2494 NaN 1 0 Median 1.0905 0.90611 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1675 0.95331 19.584 2 0 Median 220390000 99535000 120850000 72139000 32030000 40109000 33976000 16186000 17790000 77252000 33341000 43911000 35192000 17155000 18037000 0 0 0 1828200 822500 1005700 13228 222 13763 67256;67257;67258;67259;67260;67261;67262;67263;67264 67688;67689;67690;67691;67692;67693;67694;67695;67696;67697;67698;67699;67700 67699 13 HILEMNFSK GPLSIQEEWVRHLQRHILEMNFSKADPPPE VRHLQRHILEMNFSKADPPPEESQAPQAQT R H I S K A 0 0 1 0 0 0 1 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 9 0 1117.559 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 803 811 WIZ Protein Wiz yes no 2 0.0019932 75.378 By matching By MS/MS By matching 1 1 3 1.1826 1.1841 31.995 5 Median 1.2635 1.1841 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1826 1.2643 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71003 0.74733 36.715 3 0 Median NaN NaN NaN 0 0 Median 28057000 14122000 13934000 7150600 3173400 3977200 0 0 0 9297400 5287000 4010400 0 0 0 11609000 5661800 5946700 0 0 0 13229 656 13764 67265;67266;67267;67268;67269 67701 67701 1 HILILQNK QTSEHLAAIEIMKLKHILILQNKIDLVKES IEIMKLKHILILQNKIDLVKESQAKEQYEQ K H I N K I 0 0 1 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 977.6022 P41091;Q2VIR3 P41091 184 191 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 1.2365E-05 160.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 5 1.2411 1.0802 19.061 15 Median 1.2014 1.1506 8.9357 2 0 Median 1.136 0.96129 4.3156 3 0 Median 1.3949 1.4001 14.516 3 0 Median 1.2411 1.0789 1.1489 3 0 Median NaN NaN NaN 0 0 Median 1.2839 1.0638 22.956 4 1 Median 119710000 51778000 67936000 8696300 4144600 4551700 16594000 7309700 9284000 33449000 13809000 19640000 52995000 23015000 29979000 0 0 0 7979900 3499400 4480500 13230 2295 13765 67270;67271;67272;67273;67274;67275;67276;67277;67278;67279;67280;67281;67282;67283;67284;67285 67702;67703;67704;67705;67706;67707;67708;67709;67710;67711;67712;67713;67714;67715;67716;67717;67718;67719;67720;67721;67722;67723;67724;67725 67715 24 HILLAVANDEELNQLLK GNAARDNKKGRVTPRHILLAVANDEELNQL LLAVANDEELNQLLKGVTIASGGVLPNIHP R H I L K G 2 0 2 1 0 1 2 0 1 1 5 1 0 0 0 0 0 0 0 1 0 0 17 0 1932.068 O75367;D6RCF2;Q9P0M6 O75367 80 96 H2AFY;H2AFY2 Core histone macro-H2A.1;Histone H2A;Core histone macro-H2A.2 no no 2;3 6.3009E-06 72.175 By matching By MS/MS By MS/MS 1 8 10 1.2402 1.0837 16.09 19 Median NaN NaN NaN 0 0 Median 1.7052 1.4725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93365 0.93617 9.2266 8 0 Median 1.3967 1.1391 11.008 10 0 Median 240730000 102760000 137970000 0 0 0 830350 332700 497650 0 0 0 0 0 0 56885000 29342000 27543000 183020000 73087000 109930000 13231 1662;4206 13766 67286;67287;67288;67289;67290;67291;67292;67293;67294;67295;67296;67297;67298;67299;67300;67301;67302;67303;67304 67726;67727;67728;67729;67730;67731;67732;67733;67734;67735;67736;67737 67737 12 HILLYGPPGTGK AIATRNTKKNRGLYRHILLYGPPGTGKTLF LYRHILLYGPPGTGKTLFAKKLALHSGMDY R H I G K T 0 0 0 0 0 0 0 3 1 1 2 1 0 0 2 0 1 0 1 0 0 0 12 0 1251.6976 Q5T9A4 Q5T9A4 347 358 ATAD3B ATPase family AAA domain-containing protein 3B no no 2 0.0044866 64.297 By MS/MS 1 0.2012 0.168 NaN 1 Median NaN NaN NaN 0 0 Median 0.2012 0.168 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20483000 18967000 1516600 0 0 0 20483000 18967000 1516600 0 0 0 0 0 0 0 0 0 0 0 0 13232 3098 13767 67305 67738 67738 1 HILPLWIDGYVMGFVSK TFWTWLEAILDLIKKHILPLWIDGYVMGFV LPLWIDGYVMGFVSKEKERLLLKDKMPGTF K H I S K E 0 0 0 1 0 0 0 2 1 2 2 1 1 1 1 1 0 1 1 2 0 0 17 0 1974.0437 Q14765 Q14765 564 580 STAT4 Signal transducer and activator of transcription 4 yes yes 2 0.00038236 57.492 By MS/MS 1 0.29609 0.28573 NaN 1 Median 0.29609 0.28573 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14787000 11446000 3341300 14787000 11446000 3341300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13233 2898 13768 67306 67739 67739 1 HILTTELR AETAHLRKELLIAAKHILTTELRNQFIPCM ELLIAAKHILTTELRNQFIPCMDKLFDESI K H I L R N 0 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 8 0 981.56073 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 337 344 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0034702 94.262 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.99617 0.95497 31.979 5 Median NaN NaN NaN 0 0 Median 1.0742 0.89422 NaN 1 0 Median 0.98452 1.063 5.5781 2 0 Median 1.0963 0.95497 NaN 1 0 Median 0.51996 0.49564 NaN 1 0 Median NaN NaN NaN 0 0 Median 35992000 18131000 17861000 0 0 0 6515700 3034700 3481100 21806000 10678000 11128000 3639600 1788000 1851600 4030600 2630200 1400400 0 0 0 13234 991 13769 67307;67308;67309;67310;67311 67740;67741;67742;67743;67744 67741 5 HILVSQGLIR CITLLRALATNPALRHILVSQGLIRELFDY NPALRHILVSQGLIRELFDYNLRRGAAAMR R H I I R E 0 1 0 0 0 1 0 1 1 2 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1134.6873 Q5T4S7 Q5T4S7 3898 3907 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.00021694 128.69 By MS/MS By MS/MS By matching 2 3 1 1.1936 1.0375 30.027 6 Median 1.1769 1.1352 6.4881 2 0 Median 1.2347 0.98601 35.477 3 0 Plateau NaN NaN NaN 0 0 Median 1.3755 1.1931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83420000 37454000 45966000 26941000 12331000 14610000 56155000 24972000 31184000 0 0 0 323380 151150 172230 0 0 0 0 0 0 13235 3089 13770 67312;67313;67314;67315;67316;67317 67745;67746;67747;67748;67749;67750 67745 6 HILYNEQR NTYDRCPMELVRCIRHILYNEQRLVREANN ELVRCIRHILYNEQRLVREANNGSSPAGSL R H I Q R L 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1071.5461 P51692;C9J4I3;K7EK35;P42229;C9JVV6 P51692 111 118 STAT5B;STAT5A Signal transducer and activator of transcription 5B;Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A yes no 2 0.018519 47.849 By MS/MS By MS/MS 1 1 1.0319 0.96775 8.1737 2 Median 1.0255 1.0253 NaN 1 0 Median 1.0383 0.9134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1897500 896630 1000900 445330 209540 235790 1452200 687090 765120 0 0 0 0 0 0 0 0 0 0 0 0 13236 2441 13771 67318;67319 67751;67752;67753 67752 3 HIMGQNVADYMR YDSESKEFNAEVHRKHIMGQNVADYMRYLM HRKHIMGQNVADYMRYLMEEDEDAYKKQFS K H I M R Y 1 1 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 1 1 0 0 12 0 1433.6544 A0A2R8Y6J3;P46777 A0A2R8Y6J3 148 159 RPL5 60S ribosomal protein L5 yes no 2;3 1.991E-06 157.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19 15 7 11 11 7 2.5853 2.1426 16.946 70 Linear 1.1786 1.1469 14.316 19 0 Median 1.2296 1.0199 28.053 15 1 Median 1.1941 1.1653 6.7314 7 0 Median 1.2892 1.0803 6.4203 11 2 Median 1.0726 1.0883 12.687 11 2 Median 1.2644 1.0573 9.3699 7 0 Median 1289900000 569790000 720110000 718060000 321620000 396440000 289020000 120390000 168630000 52371000 22350000 30021000 79419000 33724000 45695000 133040000 63659000 69382000 17983000 8043100 9940100 13237 375 13772;13773;13774 67320;67321;67322;67323;67324;67325;67326;67327;67328;67329;67330;67331;67332;67333;67334;67335;67336;67337;67338;67339;67340;67341;67342;67343;67344;67345;67346;67347;67348;67349;67350;67351;67352;67353;67354;67355;67356;67357;67358;67359;67360;67361;67362;67363;67364;67365;67366;67367;67368;67369;67370;67371;67372;67373;67374;67375;67376;67377;67378;67379;67380;67381;67382;67383;67384;67385;67386;67387;67388;67389 67754;67755;67756;67757;67758;67759;67760;67761;67762;67763;67764;67765;67766;67767;67768;67769;67770;67771;67772;67773;67774;67775;67776;67777;67778;67779;67780;67781;67782;67783;67784;67785;67786;67787;67788;67789;67790;67791;67792;67793;67794;67795;67796;67797;67798;67799;67800;67801;67802;67803;67804;67805;67806;67807;67808;67809;67810;67811;67812;67813;67814;67815;67816;67817;67818;67819;67820;67821;67822;67823 67780 176;177 70 HIMIDLGTGNNNK ELYDPCTVMFFFRNKHIMIDLGTGNNNKIN NKHIMIDLGTGNNNKINWAMEDKQEMVDII K H I N K I 0 0 3 1 0 0 0 2 1 2 1 1 1 0 0 0 1 0 0 0 0 0 13 0 1425.7034 P83876;K7ESL1 P83876 89 101 TXNL4A Thioredoxin-like protein 4A yes no 2;3 1.7171E-07 168.74 By MS/MS By MS/MS By MS/MS 2 2 4 1.108 1.009 10.512 8 Median 1.1222 1.0463 14.964 2 0 Median 1.2909 1.0686 2.7253 2 0 Median 0.98313 0.9482 11.874 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49159000 22164000 26995000 3410100 1457100 1953000 11011000 4273800 6737500 34738000 16433000 18305000 0 0 0 0 0 0 0 0 0 13238 2662 13775;13776 67390;67391;67392;67393;67394;67395;67396;67397 67824;67825;67826;67827;67828;67829;67830;67831;67832 67828 1346 9 HIMSEPEEITTMSGQK GVIIAGYCVEGTLAKHIMSEPEEITTMSGQ IMSEPEEITTMSGQKLPLKMSVDYISFSAH K H I Q K L 0 0 0 0 0 1 3 1 1 2 0 1 2 0 1 2 2 0 0 0 0 0 16 0 1816.8335 Q9UKF6;G5E9W3 Q9UKF6 366 381 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3 2.4221E-05 71.692 By MS/MS By MS/MS 3 2 0.75622 0.77784 20.654 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75622 0.77784 6.7862 3 2 Median 0.93514 0.81173 39.422 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39178000 21531000 17647000 0 0 0 0 0 0 35635000 19766000 15870000 3542600 1765100 1777500 0 0 0 0 0 0 13239 4309 13777;13778 67398;67399;67400;67401;67402 67833;67834;67835;67836;67837 67835 1922 5 HINDSAPEVR LPKSLLKPFCAALLKHINDSAPEVRDAAFE AALLKHINDSAPEVRDAAFEALGTALKVVG K H I V R D 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1136.5574 Q14008 Q14008 447 456 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0052688 50.607 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 0.8913 0.86097 16.597 9 Median 0.86451 0.86097 NaN 1 0 Median 0.86683 0.76276 NaN 1 0 Median 0.89669 0.98263 7.0716 2 0 Median 1.0013 0.87096 4.4315 2 0 Median 1.0828 1.1027 NaN 1 0 Median 0.8328 0.69244 8.6235 2 0 Median 8935300 4706900 4228400 540990 332130 208860 528390 319130 209260 3931500 2057800 1873700 2019600 1021700 997880 500230 225000 275230 1414600 751070 663510 13240 2850 13779 67403;67404;67405;67406;67407;67408;67409;67410;67411 67838;67839;67840;67841;67842;67843;67844;67845;67846;67847;67848;67849;67850;67851 67849 14 HINELSMK QQIMEKHYGFNEILKHINELSMKIDVEDIL GFNEILKHINELSMKIDVEDILCKAEAISL K H I M K I 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 1 0 0 0 0 0 0 8 0 970.4906 Q8TC07 Q8TC07 590 597 TBC1D15 TBC1 domain family member 15 yes yes 2 0.008532 62.582 By matching By MS/MS 1 1 0.90822 0.82678 19.049 2 Median 0.97565 0.94599 NaN 1 0 Median 0.84546 0.72259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4785800 2448900 2337000 832040 503780 328260 3953800 1945100 2008700 0 0 0 0 0 0 0 0 0 0 0 0 13241 3463 13780 67412;67413 67852 67852 1 HINMDGTINVDDFK KTNVALMCMLREIGKHINMDGTINVDDFKI KHINMDGTINVDDFKIIYIAPMRSLVQEMV K H I F K I 0 0 2 3 0 0 0 1 1 2 0 1 1 1 0 0 1 0 0 1 0 0 14 0 1617.7457 O75643;A0A494C1A5 O75643 524 537 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 1.4259E-07 134.99 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 4 3 1 1.0429 1.0624 18.642 12 Median 0.83319 0.81428 5.2521 2 1 Median 1.0492 0.91981 10.587 2 0 Median 1.0429 1.1505 6.8619 4 0 Median 1.3272 1.2004 9.6124 3 1 Median 0.72677 0.76449 NaN 1 0 Median NaN NaN NaN 0 0 Median 69745000 34611000 35134000 8148200 4337700 3810500 3811100 1838200 1972900 51931000 25635000 26296000 4469100 2102700 2366500 1384800 697320 687450 0 0 0 13242 1688 13781;13782 67414;67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425 67853;67854;67855;67856;67857;67858;67859;67860;67861;67862;67863 67859 550 11 HINTWVAEK MEELDFISAVEKSRKHINTWVAEKTEGKIA VEKSRKHINTWVAEKTEGKIAELLSPGSVD K H I E K T 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 0 9 0 1096.5665 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 137 145 SERPINB6 Serpin B6 yes no 2 0.0010628 85.676 By MS/MS By MS/MS By matching 1 1 1 1.3038 1.1196 21.753 3 Median 0.89743 0.8509 NaN 1 0 Median 1.3038 1.1196 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5377 1.3075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6274300 2853900 3420400 2247800 1208300 1039500 3778100 1555900 2222200 0 0 0 248410 89647 158760 0 0 0 0 0 0 13243 1 13783 67426;67427;67428 67864;67865 67864 2 HINTWVAEKTEGK MEELDFISAVEKSRKHINTWVAEKTEGKIA RKHINTWVAEKTEGKIAELLSPGSVDPLTR K H I G K I 1 0 1 0 0 0 2 1 1 1 0 2 0 0 0 0 2 1 0 1 0 0 13 1 1511.7732 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 137 149 SERPINB6 Serpin B6 yes no 3 0.034998 20.106 By MS/MS 1 0.81725 0.76516 NaN 1 Median 0.81725 0.76516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504900 707640 797250 1504900 707640 797250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13244 1 13784 67429 67866;67867 67866 2 HIPEAHQATLLDGK FTVDTPAKASITSKRHIPEAHQATLLDGKQ RHIPEAHQATLLDGKQGKVIMPLGSKLTGV R H I G K Q 2 0 0 1 0 1 1 1 2 1 2 1 0 0 1 0 1 0 0 0 0 0 14 0 1528.7998 Q8NFC6 Q8NFC6 1365 1378 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 0.00021436 60.401 By MS/MS By MS/MS 2 1 0.88946 0.95114 6.8286 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84955 0.92739 9.4337 2 0 Median 0.98687 0.95114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17374000 9123700 8250100 0 0 0 0 0 0 15094000 7890900 7202900 2280000 1232800 1047200 0 0 0 0 0 0 13245 3434 13785 67430;67431;67432 67868;67869;67870;67871;67872;67873 67869 6 HIPGSPFTAK TLPGDYSILVKYNDKHIPGSPFTAKITDDS KYNDKHIPGSPFTAKITDDSRRCSQVKLGS K H I A K I 1 0 0 0 0 0 0 1 1 1 0 1 0 1 2 1 1 0 0 0 0 0 10 0 1053.5607 Q14315;O75369;E7EN95 O75369 1898 1907 FLNC;FLNB Filamin-C;Filamin-B no no 2 0.00070642 72.042 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 0.87178 0.82334 6.1965 7 Median 0.86476 0.83727 2.3713 2 0 Median 0.89498 0.79682 0.62742 2 0 Median 0.7403 0.82516 NaN 1 0 Median 0.93362 0.87285 11.828 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62752000 33152000 29599000 5315800 2730300 2585500 51136000 27223000 23913000 2899800 1524400 1375400 3400000 1674800 1725200 0 0 0 0 0 0 13246 1664;2871 13786 67433;67434;67435;67436;67437;67438;67439 67874;67875;67876;67877;67878;67879;67880;67881;67882;67883 67878 10 HIPLAPGSDWR HICKDMSALVAARMRHIPLAPGSDWRDLPN ARMRHIPLAPGSDWRDLPNIEVRLSDGTMA R H I W R D 1 1 0 1 0 0 0 1 1 1 1 0 0 0 2 1 0 1 0 0 0 0 11 0 1247.6411 P26358;K7ENW7 P26358 1427 1437 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2;3 0.00014063 111.95 By MS/MS By MS/MS By matching 4 4 1 0.79017 0.70967 22.897 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77707 0.85078 13.91 4 1 Median 0.79782 0.69503 20.989 4 1 Median NaN NaN NaN 0 0 Median 0.79244 0.66419 NaN 1 0 Median 79488000 42601000 36887000 0 0 0 0 0 0 63710000 34109000 29601000 15521000 8368500 7152400 0 0 0 257300 123540 133760 13247 2142 13787 67440;67441;67442;67443;67444;67445;67446;67447;67448 67884;67885;67886;67887;67888;67889;67890;67891;67892;67893;67894 67890 10 HIQALAIR MEKSIEDMTEEAFQKHIQALAIRRLDKPKK TEEAFQKHIQALAIRRLDKPKKLSAECAKY K H I I R R 2 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 920.55558 P14735;A0A3B3ISG5 P14735 885 892 IDE Insulin-degrading enzyme yes no 2 0.0062263 72.138 By matching By MS/MS 1 1 1.1531 1.0339 16.301 2 Median 1.1998 1.1602 NaN 1 0 Median 1.1082 0.92132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23674000 11020000 12653000 4585900 2073000 2512900 19088000 8947300 10140000 0 0 0 0 0 0 0 0 0 0 0 0 13248 423 13788 67449;67450 67895 67895 1 HIQDLNWQR HMIEHAQKELQKLRKHIQDLNWQRKNMQLT LQKLRKHIQDLNWQRKNMQLTAGSKLREME K H I Q R K 0 1 1 1 0 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 9 0 1208.6051 O75934 O75934 159 167 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3 1.8617E-05 155.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.2157 1.0936 21.797 7 Median 1.2756 1.2076 NaN 1 1 Median 2.1432 1.8171 NaN 1 1 Median 1.0585 1.0108 10.716 2 1 Median 1.3568 1.1264 NaN 1 0 Median 1.0903 1.0936 NaN 1 0 Median 1.2157 0.97958 NaN 1 0 Median 69513000 33183000 36330000 7832300 3902200 3930000 2503200 963690 1539600 42143000 20362000 21781000 5340200 2370400 2969900 7705900 3823700 3882100 3988600 1760800 2227800 13249 1707 13789 67451;67452;67453;67454;67455;67456;67457 67896;67897;67898;67899;67900;67901;67902;67903;67904;67905 67898 10 HIQEHYGGTATFYLSQAADGAK TVTLLEASAAPHAMRHIQEHYGGTATFYLS GTATFYLSQAADGAKVLCL___________ R H I A K V 4 0 0 1 0 2 1 3 2 1 1 1 0 1 0 1 2 0 2 0 0 0 22 0 2364.1135 P51570;K7EII7 P51570 367 388 GALK1 Galactokinase yes no 3;4 2.6499E-12 66.644 By MS/MS By MS/MS 2 2 0.92793 0.86073 20.253 4 Median 0.92793 0.86073 4.5532 2 0 Median NaN NaN NaN 0 0 Median 0.78771 0.82526 34.528 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44708000 23746000 20961000 30362000 14494000 15868000 0 0 0 14345000 9252100 5093200 0 0 0 0 0 0 0 0 0 13250 2434 13790 67458;67459;67460;67461 67906;67907;67908;67909 67907 4 HIQHDTIGYLLTR AFEPVVDLYSSLDAKHIQHDTIGYLLTRYA AKHIQHDTIGYLLTRYAESLGQYAAASQSC K H I T R Y 0 1 0 1 0 1 0 1 2 2 2 0 0 0 0 0 2 0 1 0 0 0 13 0 1565.8314 Q14CX7 Q14CX7 536 548 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 3 0.00015962 69.92 By matching By MS/MS By MS/MS 1 2 2 1.0617 1.0924 26.147 5 Median NaN NaN NaN 0 0 Median 0.85996 0.74374 NaN 1 0 Median 1.211 1.3099 17.783 2 0 Median 1.1688 0.99179 13.659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16101000 7368700 8732700 0 0 0 1441500 611450 830020 8703600 3942400 4761300 5956300 2814800 3141500 0 0 0 0 0 0 13251 2908 13791 67462;67463;67464;67465;67466 67910;67911;67912 67912 3 HIQKEDVPSER ISSSEEIVPNSVEQKHIQKEDVPSERYLGY VEQKHIQKEDVPSERYLGYLEQLLRLKKYK K H I E R Y 0 1 0 1 0 1 2 0 1 1 0 1 0 0 1 1 0 0 0 1 0 0 11 1 1336.6735 CON__P02662 CON__P02662 80 90 yes yes 3 0.001706 62.466 By MS/MS 1 0.032075 0.031471 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.032075 0.031471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 647370 626770 20597 0 0 0 0 0 0 0 0 0 647370 626770 20597 0 0 0 0 0 0 + 13252 742 13792 67467 67913 67913 1 HIQQHFYQNVSK LIYKCSCEMVFNKKRHIQQHFYQNVSKTQV KKRHIQQHFYQNVSKTQVGVFKCPECPLLF R H I S K T 0 0 1 0 0 3 0 0 2 1 0 1 0 1 0 1 0 0 1 1 0 0 12 0 1527.7583 Q92610 Q92610 875 886 ZNF592 Zinc finger protein 592 yes yes 3 0.0037862 35.496 By MS/MS By MS/MS 1 1 1.5701 1.5555 9.5588 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3482 1.4538 NaN 1 0 Median 1.8287 1.6643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051000 1250400 1800600 0 0 0 0 0 0 2117100 895530 1221600 933930 354910 579020 0 0 0 0 0 0 13253 3543 13793 67468;67469 67914;67915;67916;67917 67917 4 HISDSVFLEAAK IFPGVALAVILCNTRHISDSVFLEAAKALT NTRHISDSVFLEAAKALTSQLTDEELAQGR R H I A K A 2 0 0 1 0 0 1 0 1 1 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1315.6772 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68 A0A1W2PPH1 447 458 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2;3 3.6389E-06 114.4 By MS/MS By MS/MS 1 1 1.0573 0.94978 25.169 2 Median 0.85048 0.79494 NaN 1 1 Median 1.3143 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21505000 10667000 10838000 19214000 9721600 9492000 2291300 944970 1346300 0 0 0 0 0 0 0 0 0 0 0 0 13254 337 13794 67470;67471 67918;67919 67918 2 HISHQTSVNADPASHEIWR PFASYGLHHTSLLKRHISHQTSVNADPASH QTSVNADPASHEIWRSETLLQVFVEMWLHH R H I W R S 2 1 1 1 0 1 1 0 3 2 0 0 0 0 1 3 1 1 0 1 0 0 19 0 2184.0461 Q9NXE4;H7C1Q6;H7C2J2;H7C2E2 Q9NXE4 279 297 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 4 2.9984E-08 69.188 By MS/MS By MS/MS 2 1 0.81516 0.83629 13.527 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73576 0.76365 17.632 2 0 Median 0.97046 0.83629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31122000 16902000 14220000 0 0 0 0 0 0 27549000 15384000 12165000 3572600 1517100 2055500 0 0 0 0 0 0 13255 4162 13795 67472;67473;67474 67920;67921;67922;67923;67924;67925 67920 6 HISVLAETIKK LDLLLQEWQTHSLERHISVLAETIKKGIHD SLERHISVLAETIKKGIHDADSEARIEARK R H I K K G 1 0 0 0 0 0 1 0 1 2 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1237.7394 Q7Z460;F8WA11;H0Y5T1 Q7Z460 483 493 CLASP1 CLIP-associating protein 1 yes no 3 0.00053947 54.471 By matching By MS/MS By matching 1 1 1 1.0433 1.1534 38.614 3 Plateau 0.84474 0.8655 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1482 1.3138 NaN 1 0 Median 0.6524 0.60746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4495200 2079000 2416100 1709800 980070 729720 0 0 0 2279600 790580 1489000 505800 308390 197400 0 0 0 0 0 0 13256 1090 13796 67475;67476;67477 67926 67926 1 HITESVNSIR DKHKKEAELTEINRRHITESVNSIRRLEEA EINRRHITESVNSIRRLEEAQKQRHDRLVA R H I I R R 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 2 1 0 0 1 0 0 10 0 1154.6044 Q01970 Q01970 1128 1137 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.012347 41.448 By MS/MS By MS/MS 1 2 1.2903 1.1045 18.972 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.268 1.3825 NaN 1 0 Median 1.209 1.0233 10.795 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4336300 1945900 2390400 0 0 0 0 0 0 1849700 861160 988550 2486600 1084700 1401800 0 0 0 0 0 0 13257 2695 13797 67478;67479;67480 67927;67928;67929 67927 3 HITIFSPEGR ______________________________ AGFDRHITIFSPEGRLYQVEYAFKAINQGG R H I G R L 0 1 0 0 0 0 1 1 1 2 0 0 0 1 1 1 1 0 0 0 0 0 10 0 1155.6037 G3V5Z7;P60900;G3V295;G3V3I1;G3V3U4;G3V4S5;G3V2S7 G3V5Z7 12 21 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 1.2388E-06 146.81 By MS/MS By MS/MS By MS/MS 1 1 1 0.92201 0.82762 1.7167 2 Median 0.85857 0.81764 NaN 1 0 Median 0.99014 0.83773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145650000 74563000 71088000 116370000 60182000 56187000 29283000 14381000 14902000 0 0 0 0 0 0 0 0 0 0 0 0 13258 1122 13798 67481;67482;67483 67930;67931;67932;67933;67934;67935;67936 67933 7 HITLIFNPTR YILPQVSFTAVGYHKHITLIFNPTRKLPEQ VGYHKHITLIFNPTRKLPEQDIAQGSYIAL K H I T R K 0 1 1 0 0 0 0 0 1 2 1 0 0 1 1 0 2 0 0 0 0 0 10 0 1210.6822 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;H3BUC9;J3KN36;P69849;Q5JPE7;A0A087WTD5 J3KN36 1140 1149 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.014124 39.148 By MS/MS 1 0.96034 0.81189 NaN 1 Median NaN NaN NaN 0 0 Median 0.96034 0.81189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4550900 2222300 2328600 0 0 0 4550900 2222300 2328600 0 0 0 0 0 0 0 0 0 0 0 0 13259 117;1301 13799 67484 67937 67937 1 HITLYDIR DAFAEELERQGYGDKHITLYDIRAELSCRY RQGYGDKHITLYDIRAELSCRYKDLRTAYR K H I I R A 0 1 0 1 0 0 0 0 1 2 1 0 0 0 0 0 1 0 1 0 0 0 8 0 1029.5607 Q7KZ85 Q7KZ85 1120 1127 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0052175 77.058 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.98064 1.0466 26.287 5 Median 0.68897 0.66398 NaN 1 0 Median 1.2253 1.0466 NaN 1 1 Median 0.98064 1.0707 NaN 1 0 Median 1.3193 1.159 NaN 1 1 Median 0.66136 0.69466 NaN 1 0 Median NaN NaN NaN 0 0 Median 26642000 12429000 14213000 4222500 2085400 2137100 6201200 2752100 3449000 10704000 5076000 5627600 2593200 1166500 1426700 2921700 1349000 1572700 0 0 0 13260 3213 13800 67485;67486;67487;67488;67489 67938;67939;67940 67938 3 HITTISDETSEQVTR HLVEEAQVITLDGTKHITTISDETSEQVTR HITTISDETSEQVTRWAAALEGYRKEQERL K H I T R W 0 1 0 1 0 1 2 0 1 2 0 0 0 0 0 2 4 0 0 1 0 0 15 0 1715.8326 Q06546 Q06546 151 165 GABPA GA-binding protein alpha chain yes yes 2;3 4.014E-36 210.91 By MS/MS By MS/MS By matching 2 2 1 1.0116 0.91064 7.2592 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90928 0.93783 11.745 2 0 Median 1.1019 0.94373 5.0476 2 0 Median NaN NaN NaN 0 0 Median 1.0116 0.87138 NaN 1 0 Median 30035000 14304000 15731000 0 0 0 0 0 0 10687000 5024600 5662400 17088000 8231800 8855900 0 0 0 2260500 1047800 1212700 13261 2726 13801 67490;67491;67492;67493;67494 67941;67942;67943;67944;67945;67946;67947;67948;67949 67945 9 HITTLQASFLTK TSLVLRYCENKFNDKHITTLQASFLTKKLN NDKHITTLQASFLTKKLNIGGKRVNLAIWD K H I T K K 1 0 0 0 0 1 0 0 1 1 2 1 0 1 0 1 3 0 0 0 0 0 12 0 1358.7558 Q9UL25 Q9UL25 48 59 RAB21 Ras-related protein Rab-21 yes yes 2 1.1529E-09 176.42 By MS/MS By matching 1 1 1.0442 0.9255 8.2101 2 Median 1.0574 0.98082 NaN 1 0 Median 1.0311 0.8733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23877000 10139000 13738000 21586000 9000200 12586000 2290600 1139200 1151500 0 0 0 0 0 0 0 0 0 0 0 0 13262 4320 13802 67495;67496 67950;67951 67950 2 HIVENAVQK EKFVPYYDLFMPSLKHIVENAVQKELRLLR FMPSLKHIVENAVQKELRLLRGKTIECISL K H I Q K E 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 2 0 0 9 0 1036.5665 O00410;H0Y8C6 O00410 540 548 IPO5 Importin-5 yes no 2 0.0013697 82.279 By MS/MS 2 0.985 0.84721 8.9819 2 Median NaN NaN NaN 0 0 Median 0.985 0.84721 8.9819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8596300 3975500 4620800 0 0 0 8596300 3975500 4620800 0 0 0 0 0 0 0 0 0 0 0 0 13263 1460 13803 67497;67498 67952;67953;67954;67955;67956;67957 67953 6 HIVLSGGSTMYPGLPSR TIQAADIDTRSEFYKHIVLSGGSTMYPGLP VLSGGSTMYPGLPSRLERELKQLYLERVLK K H I S R L 0 1 0 0 0 0 0 3 1 1 2 0 1 0 2 3 1 0 1 1 0 0 17 0 1770.9087 P61160;F5H6T1 P61160 300 316 ACTR2 Actin-related protein 2 yes no 2;3 1.8281E-13 123.29 By MS/MS By MS/MS By MS/MS By matching 2 2 4 3 0.88313 0.89322 7.8339 10 Median 0.86195 0.86341 0.085616 2 0 Median 0.98166 0.85151 12.072 2 0 Median 0.82351 0.90274 10.02 3 0 Plateau 1.0113 0.98325 5.9545 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149500000 80600000 68905000 67191000 35122000 32068000 6318100 3196400 3121800 71225000 40107000 31118000 4770800 2174000 2596700 0 0 0 0 0 0 13264 2546 13804;13805 67499;67500;67501;67502;67503;67504;67505;67506;67507;67508;67509 67958;67959;67960;67961;67962;67963;67964;67965;67966;67967;67968;67969;67970 67962 1222 13 HIVNHAVVNEDPNAR YDETLSTLRYADRAKHIVNHAVVNEDPNAR HIVNHAVVNEDPNARIIRDLREEVEKLREQ K H I A R I 2 1 3 1 0 0 1 0 2 1 0 0 0 0 1 0 0 0 0 3 0 0 15 0 1683.8441 Q9NQT8;E7ERX9 Q9NQT8 352 366 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein yes no 3 8.7548E-05 51.546 By MS/MS By matching 1 1 0.83884 0.82092 30.03 2 Median NaN NaN NaN 0 0 Median 1.1822 1.0151 NaN 1 0 Median 0.59519 0.66387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1450200 775630 674560 0 0 0 753280 334500 418780 696910 441130 255780 0 0 0 0 0 0 0 0 0 13265 4068 13806 67510;67511 67971;67972 67972 2 HIWITAAK RKVLNKARENIPTDRHIWITAAKLEEANGN ENIPTDRHIWITAAKLEEANGNTQMVEKII R H I A K L 2 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 8 0 938.53379 O94906 O94906 465 472 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00025848 155.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1 2 1.1068 1.0392 14.392 10 Median 1.1686 1.1809 NaN 1 0 Median 1.2068 1.0266 11.788 3 2 Plateau 0.96492 1.0546 NaN 1 0 Median 1.3704 1.1887 13.625 2 0 Median 1.0188 1.052 NaN 1 0 Median 1.1214 0.92145 9.3352 2 1 Median 42910000 20392000 22517000 1114500 588050 526490 8725800 4043100 4682600 9505300 5039300 4466000 8195300 3554500 4640800 5087400 2571700 2515800 10281000 4595700 5685600 13266 1735 13807 67512;67513;67514;67515;67516;67517;67518;67519;67520;67521 67973;67974;67975;67976;67977;67978;67979;67980;67981 67979 9 HIYLLPSGR TGLNPKQVEYLVNEKHIYLLPSGRINVSGL YLVNEKHIYLLPSGRINVSGLTTKNLDYVA K H I G R I 0 1 0 0 0 0 0 1 1 1 2 0 0 0 1 1 0 0 1 0 0 0 9 0 1054.5924 P17174 P17174 379 387 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.0004206 130.27 By MS/MS By MS/MS By MS/MS 1 1 1 0.99896 0.94444 8.47 3 Median 1.0287 1.03 NaN 1 0 Median 0.99896 0.86952 NaN 1 0 Median 0.8684 0.94444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77973000 35844000 42129000 30305000 14493000 15812000 39166000 17480000 21686000 8502200 3871300 4630900 0 0 0 0 0 0 0 0 0 13267 2038 13808 67522;67523;67524 67982;67983;67984;67985;67986 67983 4 HIYLSTR ALPTAHHTLGLPVGKHIYLSTRIDGSLVIR TLGLPVGKHIYLSTRIDGSLVIRPYTPVTS K H I T R I 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 1 0 0 0 7 0 888.48175 Q9UHQ9;H7C0R7 Q9UHQ9 82 88 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.043995 43.124 By MS/MS By MS/MS 1 1 1.1103 1.0018 21.502 2 Median 0.88932 0.86052 NaN 1 0 Median 1.3861 1.1663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4234700 2080300 2154400 2152200 1125800 1026400 2082500 954530 1128000 0 0 0 0 0 0 0 0 0 0 0 0 13268 4280 13809 67525;67526 67987;67988 67988 2 HIYYITGETK VSLKDYCTRMKENQKHIYYITGETKDQVAN KENQKHIYYITGETKDQVANSAFVERLRKH K H I T K D 0 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 2 0 0 0 10 0 1223.6186 P07900;Q58FG0 P07900 490 499 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2;3 1.5882E-31 215.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 2 1 1 1 1.1597 1.0589 18.16 19 Median 1.2644 1.1347 9.533 8 3 Median 1.1423 0.98017 12.094 6 0 Median 0.93357 0.99707 26.517 2 0 Median 1.1794 1.0202 NaN 1 0 Median 1.7521 1.8056 NaN 1 1 Median 1.2995 1.0676 NaN 1 0 Median 536780000 242600000 294170000 169080000 73628000 95451000 317830000 145620000 172210000 26029000 13291000 12739000 13737000 6320300 7416900 5767100 1929200 3837900 4334900 1811000 2523900 13269 1894 13810 67527;67528;67529;67530;67531;67532;67533;67534;67535;67536;67537;67538;67539;67540;67541;67542;67543;67544;67545;67546 67989;67990;67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006;68007;68008;68009;68010;68011;68012;68013;68014;68015;68016 68004 28 HIYYITGETKDQVANSAFVER VSLKDYCTRMKENQKHIYYITGETKDQVAN GETKDQVANSAFVERLRKHGLEVIYMIEPI K H I E R L 2 1 1 1 0 1 2 1 1 2 0 1 0 1 0 1 2 0 2 2 0 0 21 1 2440.2023 P07900 P07900 490 510 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3;4 3.1259E-29 166.25 By MS/MS 3 1.1899 1.2253 5.4559 3 Plateau 1.1899 1.2253 5.4559 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106710000 46729000 59979000 106710000 46729000 59979000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13270 1894 13811 67547;67548;67549 68017;68018;68019;68020;68021;68022;68023;68024 68018 8 HKDAAIYLVTSLASK SMLQEYAKNPSVNWKHKDAAIYLVTSLASK HKDAAIYLVTSLASKAQTQKHGITQANELV K H K S K A 3 0 0 1 0 0 0 0 1 1 2 2 0 0 0 2 1 0 1 1 0 0 15 1 1615.8934 P55060 P55060 426 440 CSE1L Exportin-2 yes yes 2;3 2.5374E-08 121.24 By MS/MS By matching By MS/MS By matching 2 3 1 1 1.1362 1.0979 13.638 7 Median 1.0778 1.1251 7.8505 2 0 Median 1.1547 1.0979 21.069 3 0 Median 1.0257 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1362 1.0338 NaN 1 0 Median 54199000 24457000 29742000 45579000 20411000 25168000 4306900 1714800 2592100 4012700 2185500 1827200 0 0 0 0 0 0 301090 145870 155210 13271 2493 13812 67550;67551;67552;67553;67554;67555;67556 68025;68026;68027;68028;68029;68030 68028 6 HKDIDILIVR ANVIHCKSLPGVVTRHKDIDILIVRENTEG GVVTRHKDIDILIVRENTEGEYSSLEHESV R H K V R E 0 1 0 2 0 0 0 0 1 3 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1220.7241 H7C1W2;E9PF84;G5E9Q7;E7EQB8;P51553 H7C1W2 98 107 IDH3G Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 3 0.0098783 33.866 By MS/MS 1 1.3391 1.2586 NaN 1 Median NaN NaN NaN 0 0 Median 1.3391 1.2586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5083200 2081700 3001600 0 0 0 5083200 2081700 3001600 0 0 0 0 0 0 0 0 0 0 0 0 13272 877 13813 67557 68031 68031 1 HKDLQQQLVDAK EQYELREEHIDKVFKHKDLQQQLVDAKLQQ VFKHKDLQQQLVDAKLQQAQEMLKEAEERH K H K A K L 1 0 0 2 0 3 0 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1421.7627 P40222 P40222 329 340 TXLNA Alpha-taxilin yes yes 3 0.00022004 62.088 By MS/MS By MS/MS By matching 1 3 1 1.1628 1.0777 61.302 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94891 1.0648 NaN 1 0 Median 1.1671 1.1359 13.613 3 0 Median NaN NaN NaN 0 0 Median 0.33803 0.30127 NaN 1 0 Median 11875000 5731800 6142800 0 0 0 0 0 0 6465800 3051700 3414100 4267300 1914100 2353100 0 0 0 1141500 765950 375570 13273 2284 13814 67558;67559;67560;67561;67562 68032;68033;68034;68035;68036 68033 5 HKDSMDELFSHR AQLQVQKAFSIDIIRHKDSMDELFSHRSEI IIRHKDSMDELFSHRSEIFGTCGEEQKTVL R H K H R S 0 1 0 2 0 0 1 0 2 0 1 1 1 1 0 2 0 0 0 0 0 0 12 1 1500.678 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5828 5839 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.01256 26.541 By MS/MS By matching 1 1 0.85096 0.83609 19.611 2 Median 0.93358 0.96046 NaN 1 0 Median 0.77566 0.72783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8257300 3943100 4314200 4448100 2102500 2345600 3809200 1840600 1968600 0 0 0 0 0 0 0 0 0 0 0 0 13274 1220 13815 67563;67564 68037 68037 1 HKDVIINQEGEYIK STPKLIPKVTKTADKHKDVIINQEGEYIKM KHKDVIINQEGEYIKMFMRGRPITMFIPSD K H K I K M 0 0 1 1 0 1 2 1 1 3 0 2 0 0 0 0 0 0 1 1 0 0 14 1 1684.8784 Q9HC35 Q9HC35 215 228 EML4 Echinoderm microtubule-associated protein-like 4 yes yes 3 0.00014519 69.92 By matching By MS/MS 1 2 1.1445 1.074 12.725 3 Median NaN NaN NaN 0 0 Median 1.1445 1.074 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0387 1.0019 17.08 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5440900 2341600 3099300 0 0 0 1205000 494220 710740 0 0 0 4235900 1847300 2388600 0 0 0 0 0 0 13275 4024 13816 67565;67566;67567 68038;68039 68039 2 HKELAPYDENWFYTR KLKVPEWVDTVKLAKHKELAPYDENWFYTR HKELAPYDENWFYTRAASTARHLYLRGGAG K H K T R A 1 1 1 1 0 0 2 0 1 0 1 1 0 1 1 0 1 1 2 0 0 0 15 1 1967.9166 P39019;M0R2L9;M0QYF7;M0R140 P39019 42 56 RPS19 40S ribosomal protein S19 yes no 2;3;4 1.0521E-09 116.96 By matching By MS/MS By MS/MS By matching By MS/MS By matching 2 1 3 1 1 1 1.044 0.94924 16.718 9 Median 1.0356 1.0217 15.066 2 0 Median 1.0455 0.9224 NaN 1 0 Median 0.98309 1.0137 9.7436 3 0 Median 0.90454 0.80071 NaN 1 0 Median 1.2571 1.4186 NaN 1 0 Median 1.1866 0.94924 NaN 1 0 Median 113650000 54088000 59560000 34825000 16754000 18072000 2264400 1237100 1027300 67502000 31444000 36058000 397540 190220 207320 8144300 4239900 3904400 514310 222700 291610 13276 2280 13817 67568;67569;67570;67571;67572;67573;67574;67575;67576 68040;68041;68042;68043;68044;68045;68046;68047 68040 8 HKENLQHTQAEEEAHLLTQQR DHSTPKKEKQERISKHKENLQHTQAEEEAH HTQAEEEAHLLTQQRLYYDKNCRFFKRKIM K H K Q R L 2 1 1 0 0 4 4 0 3 0 3 1 0 0 0 0 2 0 0 0 0 0 21 1 2539.2528 Q9H2K8;G3V1Q8 Q9H2K8 585 605 TAOK3 Serine/threonine-protein kinase TAO3 yes no 4;5 1.7295E-09 60.561 By matching By MS/MS 1 2 0.96045 0.92301 9.7236 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78301 0.88993 NaN 1 0 Median 1.0338 0.99349 10.407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7424000 3464600 3959400 0 0 0 0 0 0 2681500 1362200 1319300 4742400 2102400 2640100 0 0 0 0 0 0 13277 3944 13818 67577;67578;67579 68048;68049 68049 2 HKEPGSGSGGGVYWVDSQQK RCGDRLLVTKCGRLRHKEPGSGSGGGVYWV SGSGGGVYWVDSQQKRYVPVKGDHVIGIVT R H K Q K R 0 0 0 1 0 2 1 5 1 0 0 2 0 0 1 3 0 1 1 2 0 0 20 1 2101.9817 Q9NQT5 Q9NQT5 88 107 EXOSC3 Exosome complex component RRP40 yes yes 3;4 1.2691E-07 58.49 By matching By MS/MS By MS/MS 1 1 1 1.0439 0.92941 3.3101 3 Median NaN NaN NaN 0 0 Median 1.0834 0.97621 NaN 1 0 Median 0.88943 0.92941 NaN 1 0 Median 1.0439 0.91661 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13716000 6953300 6763000 0 0 0 2350600 1058100 1292600 9342100 4886600 4455500 2023600 1008700 1014900 0 0 0 0 0 0 13278 4067 13819 67580;67581;67582 68050;68051;68052 68050 3 HKEPGSGSGGGVYWVDSQQKR RCGDRLLVTKCGRLRHKEPGSGSGGGVYWV GSGGGVYWVDSQQKRYVPVKGDHVIGIVTA R H K K R Y 0 1 0 1 0 2 1 5 1 0 0 2 0 0 1 3 0 1 1 2 0 0 21 2 2258.0828 Q9NQT5 Q9NQT5 88 108 EXOSC3 Exosome complex component RRP40 yes yes 4 0.0019076 36.805 By MS/MS 1 1.0325 1.0025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0325 1.0025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3911000 1797100 2113900 0 0 0 0 0 0 0 0 0 3911000 1797100 2113900 0 0 0 0 0 0 13279 4067 13820 67583 68053 68053 1 HKLDVTSVEDYK AILTCPFEPPKPKTKHKLDVTSVEDYKALQ KTKHKLDVTSVEDYKALQKYEKEKFEEMIQ K H K Y K A 0 0 0 2 0 0 1 0 1 0 1 2 0 0 0 1 1 0 1 2 0 0 12 1 1432.7198 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 264 275 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 8.401E-09 173.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 1 1 2 1.3948 1.2735 30.457 12 Median 1.1564 1.0761 1.712 2 0 Median 1.3015 1.2199 18.559 5 0 Median 1.5322 1.6029 NaN 1 0 Median 1.4683 1.3558 NaN 1 0 Median 2.9711 3.1694 NaN 1 0 Median 1.4727 1.2836 11.799 2 0 Median 225470000 99669000 125800000 82536000 37948000 44588000 123290000 54414000 68880000 6567900 2608100 3959800 3525400 1226400 2299000 4495900 1242400 3253500 5050200 2229600 2820500 13280 2364 13821 67584;67585;67586;67587;67588;67589;67590;67591;67592;67593;67594;67595 68054;68055;68056;68057;68058;68059;68060;68061;68062;68063;68064;68065;68066;68067;68068 68054 15 HKLDVTSVEDYKALQK AILTCPFEPPKPKTKHKLDVTSVEDYKALQ KLDVTSVEDYKALQKYEKEKFEEMIQQIKE K H K Q K Y 1 0 0 2 0 1 1 0 1 0 2 3 0 0 0 1 1 0 1 2 0 0 16 2 1872.9945 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 264 279 CCT5 T-complex protein 1 subunit epsilon yes no 4 0.0093709 24.467 By MS/MS 1 1.3766 1.4047 NaN 1 Median 1.3766 1.4047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9663200 3828600 5834700 9663200 3828600 5834700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13281 2364 13822 67596 68069;68070 68069 2 HKPDFISLFK RQPEAVHLLDKILKKHKPDFISLFKNPPKN KILKKHKPDFISLFKNPPKNVQQHEKVQKA K H K F K N 0 0 0 1 0 0 0 0 1 1 1 2 0 2 1 1 0 0 0 0 0 0 10 1 1230.6761 Q92621 Q92621 46 55 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.004126 40.727 By matching By MS/MS By matching 1 1 1 1.1587 1.1007 13.632 3 Median 1.3709 1.3781 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94996 1.1007 NaN 1 0 Median 1.1587 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17484000 8684000 8800400 2089900 1017800 1072100 0 0 0 15087000 7537300 7549800 307420 128870 178550 0 0 0 0 0 0 13282 3547 13823 67597;67598;67599 68071;68072;68073 68071 3 HKPGSTPEPIAAEVR LREQHIKAHEVAQAKHKPGSTPEPIAAEVR HKPGSTPEPIAAEVRSPSMESKLHRQALAL K H K V R S 2 1 0 0 0 0 2 1 1 1 0 1 0 0 3 1 1 0 0 1 0 0 15 1 1587.8369 P50748 P50748 1030 1044 KNTC1 Kinetochore-associated protein 1 yes yes 3 0.00010883 54.812 By MS/MS By MS/MS 1 2 0.74875 0.71804 27.307 3 Median 0.43764 0.4477 NaN 1 0 Median 0.75678 0.71845 0.080461 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7179300 4150700 3028700 2429400 1625200 804270 4749900 2525500 2224400 0 0 0 0 0 0 0 0 0 0 0 0 13283 2420 13824 67600;67601;67602 68074;68075;68076;68077 68076 4 HKPHDVISHEDGTLWR YSFLDKMSFYNELYKHKPHDVISHEDGTLW KPHDVISHEDGTLWRRQTPKLLYPLGGQTN K H K W R R 0 1 0 2 0 0 1 1 3 1 1 1 0 0 1 1 1 1 0 1 0 0 16 1 1925.9496 Q5SRE5 Q5SRE5 480 495 NUP188 Nucleoporin NUP188 homolog yes yes 4 0.00021621 42.947 By MS/MS By MS/MS By matching 2 2 1 1.0767 1.0235 35.044 5 Median NaN NaN NaN 0 0 Median 1.089 1.0249 0.18376 2 0 Median 1.2195 1.4211 52.43 2 1 Median 0.86355 0.83366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25380000 10856000 14524000 0 0 0 9460500 5107700 4352800 14299000 4864700 9433800 1621500 884090 737380 0 0 0 0 0 0 13284 3074 13825 67603;67604;67605;67606;67607 68078;68079;68080;68081;68082 68079 5 HKPLLIDMNK SSWRDGRLFNAIIHRHKPLLIDMNKVYRQT AIIHRHKPLLIDMNKVYRQTNLENLDQAFS R H K N K V 0 0 1 1 0 0 0 0 1 1 2 2 1 0 1 0 0 0 0 0 0 0 10 1 1207.6747 Q15149;H0YDN1;E9PMV1;E9PKG0 Q15149 337 346 PLEC Plectin yes no 2;3 0.00028516 70.389 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 2 1.1359 1.161 24.215 10 Median 1.0456 1.1376 1.816 2 0 Median 1.2207 1.1697 NaN 1 0 Median 0.87688 0.99595 11.282 2 0 Median 1.2196 1.239 NaN 1 0 Median 1.5085 1.5977 52.286 2 1 Median 1.4181 1.2559 0.41504 2 0 Median 80852000 36229000 44623000 19176000 8914200 10262000 42471000 19428000 23043000 8773300 4676100 4097200 2351400 923870 1427500 5987600 1700100 4287500 2092600 586690 1505900 13285 2933 13826 67608;67609;67610;67611;67612;67613;67614;67615;67616;67617 68083;68084;68085;68086;68087;68088;68089;68090;68091;68092;68093 68090 11 HKSETDTSLIR DEPIDLFMIEIMEMKHKSETDTSLIRGLVL MEMKHKSETDTSLIRGLVLDHGARHPDMKK K H K I R G 0 1 0 1 0 0 1 0 1 1 1 1 0 0 0 2 2 0 0 0 0 0 11 1 1285.6626 P40227 P40227 198 208 CCT6A T-complex protein 1 subunit zeta yes yes 3 5.931E-05 77.124 By MS/MS By MS/MS By matching 2 1 1 1.2629 1.2744 9.2213 4 Median 1.2611 1.2744 7.6234 2 0 Median 1.2565 1.1472 NaN 1 0 Median 1.2694 1.3989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13563000 5535900 8027100 8165600 3206700 4958900 5033800 2167400 2866400 363670 161870 201800 0 0 0 0 0 0 0 0 0 13286 2285 13827 67618;67619;67620;67621 68094;68095;68096;68097;68098 68098 5 HKTVALDGTLFQK NVEDARRIAFGGHQRHKTVALDGTLFQKSG QRHKTVALDGTLFQKSGVISGGASDLKAKA R H K Q K S 1 0 0 1 0 1 0 1 1 0 2 2 0 1 0 0 2 0 0 1 0 0 13 1 1456.8038 Q14683;G8JLG1 Q14683 636 648 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.00019455 69.456 By MS/MS By MS/MS 1 1 0.89601 1.0001 16.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76966 0.88889 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0431 1.1251 NaN 1 0 Median NaN NaN NaN 0 0 Median 19702000 10707000 8995000 0 0 0 0 0 0 9505500 6024700 3480900 0 0 0 10196000 4682200 5514200 0 0 0 13287 2889 13828 67622;67623 68099;68100;68101 68100 3 HKVNEHEQDGNELQTTPEFR PCVCQMLGFTPGISRHKVNEHEQDGNELQT HEQDGNELQTTPEFRAHVAKKLGALLDSFI R H K F R A 0 1 2 1 0 2 4 1 2 0 1 1 0 1 1 0 2 0 0 1 0 0 20 1 2407.1153 F5H7W8;Q96C57;F5H3K2;E7ENF1;G5EA44 F5H7W8 95 114 C12orf43 Uncharacterized protein C12orf43 yes no 4 1.4435E-05 39.863 By MS/MS By MS/MS 1 1 0.85928 0.8711 14.445 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72224 0.78652 NaN 1 0 Median 1.0223 0.96478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5395200 2705900 2689300 0 0 0 0 0 0 3953700 2073000 1880700 1441500 632890 808590 0 0 0 0 0 0 13288 1045 13829 67624;67625 68102;68103;68104 68103 3 HLAAALENLNK QIANELNYSCRFDSKHLAAALENLNKALLA FDSKHLAAALENLNKALLADIEAHYQDPSL K H L N K A 3 0 2 0 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1192.6564 Q12768;E7EQI7 Q12768 975 985 KIAA0196 WASH complex subunit strumpellin yes no 2 0.029153 49.418 By MS/MS 1 1.0117 0.85975 NaN 1 Median NaN NaN NaN 0 0 Median 1.0117 0.85975 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6005100 3266600 2738500 0 0 0 6005100 3266600 2738500 0 0 0 0 0 0 0 0 0 0 0 0 13289 878 13830 67626 68105 68105 1 HLAAVEER TAAAAALAAAAVKAKHLAAVEERKIKSLVA AAAVKAKHLAAVEERKIKSLVALLVETQMK K H L E R K 2 1 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 923.48248 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 875 882 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.011256 57.281 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1.0206 0.99367 7.3968 7 Median NaN NaN NaN 0 0 Median 1.0898 0.96375 NaN 1 0 Median 1.0198 0.99367 3.6138 3 0 Median NaN NaN NaN 0 0 Median 1.0117 1.0627 14.168 2 0 Median 1.303 1.0801 NaN 1 0 Median 6267700 3152500 3115200 0 0 0 776400 380700 395700 3363800 1714500 1649300 0 0 0 1781500 894600 886920 345920 162690 183230 13290 3455;3567 13831 67627;67628;67629;67630;67631;67632;67633 68106;68107;68108;68109;68110;68111;68112 68108 7 HLADHGQLSGIQR RGVKRRWRLSRIVFRHLADHGQLSGIQRAT FRHLADHGQLSGIQRATW____________ R H L Q R A 1 1 0 1 0 2 0 2 2 1 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1430.7379 O60783 O60783 113 125 MRPS14 28S ribosomal protein S14, mitochondrial yes yes 3 1.4146E-07 107.17 By MS/MS By MS/MS By MS/MS 1 1 1 1.1535 1.1672 14.12 3 Median 0.99701 0.97173 NaN 1 0 Median 1.5067 1.2828 NaN 1 0 Median 1.1535 1.1672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24310000 9905000 14405000 4558300 2105100 2453200 17268000 6523000 10745000 2483800 1277000 1206800 0 0 0 0 0 0 0 0 0 13291 1631 13832 67634;67635;67636 68113;68114;68115;68116;68117;68118;68119 68117 7 HLAEEYGER TQLKKFLGKSVKRAKHLAEEYGERAINKVK SVKRAKHLAEEYGERAINKVKSVRDEVFHT K H L E R A 1 1 0 0 0 0 3 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1102.5043 H7BY83;Q5JSH3 H7BY83 341 349 WDR44 WD repeat-containing protein 44 yes no 2 0.0044715 60.59 By matching By MS/MS 1 1 1.1388 1.0585 13.134 2 Median 1.1504 1.1615 NaN 1 0 Median 1.1273 0.96458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2597800 1219400 1378400 385920 180110 205810 2211900 1039300 1172600 0 0 0 0 0 0 0 0 0 0 0 0 13292 1246 13833 67637;67638 68120;68121 68120 2 HLAEHSPYYEAMK RAGTRNIYYLCAPNRHLAEHSPYYEAMKKK NRHLAEHSPYYEAMKKKDTEVLFCFEQFDE R H L M K K 2 0 0 0 0 0 2 0 2 0 1 1 1 0 1 1 0 0 2 0 0 0 13 0 1574.7188 I3L0K7;Q12931 Q12931 506 518 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 2.2614E-07 164.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 1 1.1615 1.0562 14.643 13 Median 0.96134 0.89483 6.7268 4 0 Median 1.2733 1.0562 9.0165 5 1 Median 1.0831 1.1344 0.89715 2 0 Median 1.5129 1.2987 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6933 1.4072 NaN 1 0 Median 200970000 91488000 109480000 88508000 42489000 46019000 100920000 43224000 57694000 9484300 5002800 4481500 1060700 420720 639940 0 0 0 998320 352140 646180 13293 2771;1269 13834;13835 67639;67640;67641;67642;67643;67644;67645;67646;67647;67648;67649;67650;67651 68122;68123;68124;68125;68126;68127;68128;68129;68130;68131;68132;68133;68134;68135;68136;68137 68125 423 16 HLAEHSPYYEAMKK RAGTRNIYYLCAPNRHLAEHSPYYEAMKKK RHLAEHSPYYEAMKKKDTEVLFCFEQFDEL R H L K K K 2 0 0 0 0 0 2 0 2 0 1 2 1 0 1 1 0 0 2 0 0 0 14 1 1702.8137 I3L0K7;Q12931 Q12931 506 519 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 4 0.066332 8.534 By MS/MS By matching 1 1 1.6904 1.5961 36.641 2 Median 2.1754 2.0682 NaN 1 0 Median 1.3135 1.2318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4638300 1694700 2943600 2376900 685120 1691800 2261400 1009600 1251800 0 0 0 0 0 0 0 0 0 0 0 0 13294 2771;1269 13836 67652;67653 68138 68138 1 HLAEQFAVGEIITDMAK RVKAAQAGRQSSAKRHLAEQFAVGEIITDM AEQFAVGEIITDMAKKEWKVGLPIGQGGFG R H L A K K 3 0 0 1 0 1 2 1 1 2 1 1 1 1 0 0 1 0 0 1 0 0 17 0 1871.9451 Q99986 Q99986 18 34 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2;3 5.9801E-07 85.619 By MS/MS By matching By matching 3 1 2 1.0303 0.92314 20.28 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99391 0.971 27.47 3 0 Median 0.99856 0.89065 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1024 0.91819 3.7686 2 0 Median 24688000 11821000 12866000 0 0 0 0 0 0 19612000 9482100 10130000 402730 191610 211120 0 0 0 4673400 2147600 2525800 13295 3775 13837 67654;67655;67656;67657;67658;67659 68139;68140;68141;68142 68140 4 HLAEVLER WDIDKIRKREQRLNRHLAEVLERVNSKGYK REQRLNRHLAEVLERVNSKGYKVYGAGSSL R H L E R V 1 1 0 0 0 0 2 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 965.52943 Q5VTR2 Q5VTR2 291 298 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.0034726 94.114 By MS/MS By MS/MS By MS/MS 1 1 1 1.1378 1.0612 5.9012 3 Plateau NaN NaN NaN 0 0 Median 1.2811 1.0719 NaN 1 0 Median 0.88139 0.96939 NaN 1 0 Median 1.1378 0.9662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21668000 10285000 11382000 0 0 0 10021000 4496800 5524000 6617800 3347900 3269900 5029000 2440400 2588600 0 0 0 0 0 0 13296 3112 13838 67660;67661;67662 68143;68144;68145;68146;68147 68144 5 HLAGLAELLPESR FRRTDSQLQGQVLFRHLAGLAELLPESRRQ FRHLAGLAELLPESRRQEYMQNCEQLLLGS R H L S R R 2 1 0 0 0 0 2 1 1 0 4 0 0 0 1 1 0 0 0 0 0 0 13 0 1404.7725 Q9NU22 Q9NU22 3142 3154 MDN1 Midasin yes yes 2;3 9.8823E-07 141.88 By MS/MS 2 0.8579 0.9199 11.951 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8579 0.9199 11.951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10988000 5838100 5149900 0 0 0 0 0 0 10988000 5838100 5149900 0 0 0 0 0 0 0 0 0 13297 4112 13839 67663;67664 68148;68149;68150;68151 68150 4 HLAGLGLTEAIDK SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK QKHLAGLGLTEAIDKNKADLSRMSGKKDLY K H L D K N 2 0 0 1 0 0 1 2 1 1 3 1 0 0 0 0 1 0 0 0 0 0 13 0 1336.7351 P50454;E9PKH2 P50454 320 332 SERPINH1 Serpin H1 yes no 2;3 2.3971E-22 199.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 3 3 2 1 3 1.3853 1.2428 14.553 13 Median 1.005 0.95178 NaN 1 0 Median 1.4038 1.2103 13.757 3 0 Median 1.1895 1.1397 14.137 3 0 Median 1.3846 1.2447 0.21249 2 0 Median 1.6755 1.6076 NaN 1 0 Median 1.5859 1.3388 13.79 3 0 Plateau 119930000 51550000 68383000 4354600 1998700 2355900 6227500 2735300 3492200 78856000 34088000 44768000 27738000 11301000 16437000 1751300 1010200 741100 1005200 416710 588480 13298 2414 13840 67665;67666;67667;67668;67669;67670;67671;67672;67673;67674;67675;67676;67677 68152;68153;68154;68155;68156;68157;68158 68156 6 HLAGLGLTEAIDKNK SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK HLAGLGLTEAIDKNKADLSRMSGKKDLYLA K H L N K A 2 0 1 1 0 0 1 2 1 1 3 2 0 0 0 0 1 0 0 0 0 0 15 1 1578.873 P50454;E9PKH2 P50454 320 334 SERPINH1 Serpin H1 yes no 3 2.0474E-76 203.25 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 1.7558 1.5648 71.859 11 Median 0.92025 0.86299 7.1243 2 0 Median 1.3686 1.2513 NaN 1 0 Median 0.42662 0.4634 105.98 2 0 Median 2.7003 2.4834 40.087 2 2 Median 2.0104 2.1318 4.8831 2 0 Median 1.7902 1.5955 2.7429 2 0 Median 512290000 160700000 351590000 58515000 33258000 25257000 4364400 1706000 2658400 39781000 31214000 8567000 354770000 74976000 279800000 30608000 10652000 19956000 24249000 8890100 15359000 13299 2414 13841 67678;67679;67680;67681;67682;67683;67684;67685;67686;67687;67688 68159;68160;68161;68162;68163;68164;68165;68166;68167;68168;68169 68165 11 HLAGVPLIGWVLR LARGGSKGIPLKNIKHLAGVPLIGWVLRAA IKHLAGVPLIGWVLRAALDSGAFQSVWVST K H L L R A 1 1 0 0 0 0 0 2 1 1 3 0 0 0 1 0 0 1 0 2 0 0 13 0 1429.8558 Q8NFW8;F5H296 Q8NFW8 65 77 CMAS N-acylneuraminate cytidylyltransferase yes no 2 0.0011407 58.676 By matching By MS/MS By matching 1 1 1 0.93474 0.9235 26.26 3 Median NaN NaN NaN 0 0 Median 0.93474 0.83383 NaN 1 0 Median 0.92004 0.9235 NaN 1 0 Median 1.5668 1.3709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4420100 2151800 2268300 0 0 0 224820 96659 128160 3812900 1898900 1913900 382410 156180 226230 0 0 0 0 0 0 13300 3441 13842 67689;67690;67691 68170;68171;68172;68173 68171 4 HLALNLQEK RLKYSQSDLEQTKTRHLALNLQEKSKLESE EQTKTRHLALNLQEKSKLESELANFGPRIN R H L E K S 1 0 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1064.5978 Q14683;G8JLG1 Q14683 726 734 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 1.0415E-06 157.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 5 1.0145 0.90381 19.923 11 Median 1.2134 1.1666 NaN 1 0 Median 0.83817 0.70669 NaN 1 0 Median 0.84868 0.90381 NaN 1 0 Median 1.2176 1.0938 NaN 1 0 Median 0.88491 0.91594 14.106 2 0 Median 1.0843 0.88677 22.274 5 0 Median 146380000 71184000 75200000 5915200 2291100 3624000 20696000 9986300 10710000 27409000 14498000 12911000 10224000 4432500 5791500 54321000 27526000 26796000 27819000 12451000 15368000 13301 2889 13843 67692;67693;67694;67695;67696;67697;67698;67699;67700;67701;67702 68174;68175;68176;68177;68178;68179;68180;68181;68182;68183;68184;68185;68186;68187;68188;68189;68190 68186 16 HLALSQPFSFTQQDMPK NNDSDCGAFVLQYCKHLALSQPFSFTQQDM ALSQPFSFTQQDMPKLRRQIYKELCHCKLT K H L P K L 1 0 0 1 0 3 0 0 1 0 2 1 1 2 2 2 1 0 0 0 0 0 17 0 1973.9669 Q9H4L4;A0A087X0R7;J3QL36;J3KSF5;J3QRE4;A0A087WV50 Q9H4L4 542 558 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 yes no 3 0.042943 21.093 By MS/MS 1 3.9097 3.9383 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.9097 3.9383 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14227000 2201100 12026000 0 0 0 0 0 0 14227000 2201100 12026000 0 0 0 0 0 0 0 0 0 13302 3966 13844 67703 68191 68191 1 HLANMMGEDPETFTQEDIDR DFIKKQIEEFNIGKRHLANMMGEDPETFTQ MGEDPETFTQEDIDRAIAYLFPSGLFEKRA R H L D R A 1 1 1 3 0 1 3 1 1 1 1 0 2 1 1 0 2 0 0 0 0 0 20 0 2348.0049 P82933 P82933 87 106 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 3 3.3755E-19 111.95 By matching By MS/MS 1 1 0.84652 0.83154 13.132 2 Median NaN NaN NaN 0 0 Median 0.85102 0.7578 NaN 1 0 Median 0.84204 0.91246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5109300 2854200 2255100 0 0 0 358070 204450 153620 4751300 2649800 2101500 0 0 0 0 0 0 0 0 0 13303 2659 13845 67704;67705 68192 68192 1 HLAPEVFR RNKILREVDRTRLERHLAPEVFREIFGMSI DRTRLERHLAPEVFREIFGMSIQEFDRLPL R H L F R E 1 1 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 967.52395 J3QSX6;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639 J3QSX6 366 373 ABLIM1 Actin-binding LIM protein 1 yes no 2 0.02273 65.038 By MS/MS 2 0.89365 0.93801 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89365 0.93801 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4818300 2511500 2306700 0 0 0 0 0 0 4818300 2511500 2306700 0 0 0 0 0 0 0 0 0 13304 1356 13846 67706;67707 68193;68194 68193 2 HLAPPGLHPVPGGVFPVPPAAVVLMK YPKPDTQQMIPFQPRHLAPPGLHPVPGGVF GGVFPVPPAAVVLMKLLPPPICFQGPFVQV R H L M K L 3 0 0 0 0 0 0 3 2 0 3 1 1 1 7 0 0 0 0 5 0 0 26 0 2596.4716 Q12996;E9PLP8 Q12996 596 621 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 1.7021E-05 42.041 By MS/MS 1 0.30869 0.3072 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30869 0.3072 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27712000 22290000 5421800 0 0 0 0 0 0 27712000 22290000 5421800 0 0 0 0 0 0 0 0 0 13305 2777 13847 67708 68195;68196 68195 2 HLAPPPLLSPLLPSIKPTVR APAPPQKPLNSQSQKHLAPPPLLSPLLPSI PLLSPLLPSIKPTVRKTRQDGSQEAPEAPL K H L V R K 1 1 0 0 0 0 0 0 1 1 5 1 0 0 6 2 1 0 0 1 0 0 20 1 2145.3038 Q14676;H0Y6Z8 Q14676 1060 1079 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 2.6826E-19 124.26 By MS/MS By matching 2 1 0.54575 0.52707 11.232 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49622 0.58086 13.742 2 0 Median 0.54575 0.52686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8027400 5248000 2779500 0 0 0 0 0 0 7899700 5168700 2731000 127760 79256 48500 0 0 0 0 0 0 13306 2887 13848 67709;67710;67711 68197;68198 68198 2 HLAQVGDSMDR ADSESQEDIIRNIARHLAQVGDSMDRSIPP NIARHLAQVGDSMDRSIPPGLVNGLALQLR R H L D R S 1 1 0 2 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 11 0 1227.5666 P55957 P55957 89 99 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes yes 2 0.0018837 56.563 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.006 0.89298 46.872 5 Median 0.98866 0.95311 9.2171 2 0 Median 1.006 0.83476 NaN 1 0 Median 1.9286 1.8001 NaN 1 0 Median 0.57312 0.4858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6753400 3430600 3322800 1837600 955730 881850 3098800 1410400 1688400 355030 111550 243480 1462000 952950 509090 0 0 0 0 0 0 13307 2505 13849 67712;67713;67714;67715;67716 68199;68200;68201 68201 3 HLASDAIINENYDYLK FKAEHWNRCHKLIIRHLASDAIINENYDYL LASDAIINENYDYLKGFLEDLAPPERSSLI R H L L K G 2 0 2 2 0 0 1 0 1 2 2 1 0 0 0 1 0 0 2 0 0 0 16 0 1877.9159 P52948;H7C3P6 P52948 1653 1668 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 2.9511E-06 86.313 By MS/MS By matching 2 2 1.1784 1.1227 10.18 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1291 1.2227 3.8581 2 0 Median 1.2337 1.0332 3.534 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51782000 23890000 27892000 0 0 0 0 0 0 49747000 22957000 26790000 2035100 933180 1101900 0 0 0 0 0 0 13308 2462 13850 67717;67718;67719;67720 68202;68203;68204 68204 3 HLAVLNFPK LGVFYTVCRDLKELRHLAVLNFPKYCEPVV DLKELRHLAVLNFPKYCEPVVKGEASERDT R H L P K Y 1 0 1 0 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 1 0 0 9 0 1037.6022 O43913 O43913 227 235 ORC5 Origin recognition complex subunit 5 yes yes 2 0.00064644 107.32 By MS/MS By MS/MS 1 1 0.91059 0.84772 4.9718 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84963 0.81843 NaN 1 0 Median 0.97591 0.87805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30805000 15893000 14911000 0 0 0 0 0 0 16347000 8709500 7637500 14458000 7183900 7273900 0 0 0 0 0 0 13309 1599 13851 67721;67722 68205;68206 68205 2 HLAVMPHPER GSPGGVAGICSCDGRHLAVMPHPERAVRPW SCDGRHLAVMPHPERAVRPWQWAWRPPPFD R H L E R A 1 1 0 0 0 0 1 0 2 0 1 0 1 0 2 0 0 0 0 1 0 0 10 0 1185.6077 O15067 O15067 1291 1300 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2;3 0.00014444 131.06 By matching By MS/MS 2 2 0.84124 0.72306 19.694 4 Median 0.76865 0.75966 31.011 2 0 Median 0.84124 0.72306 13.322 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4841800 2829100 2012700 208450 119300 89153 4633300 2709800 1923500 0 0 0 0 0 0 0 0 0 0 0 0 13310 1518 13852;13853 67723;67724;67725;67726 68207;68208;68209 68208 490 3 HLCQQLQAEQAAAEK HTSTQALVSELLPAKHLCQQLQAEQAAAEK HLCQQLQAEQAAAEKRHREELEQSKQAAGG K H L E K R 4 0 0 0 1 4 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 15 0 1723.8312 A0A087WY61;Q14980 Q14980 1365 1379 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 7.2874E-07 91.812 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.154 1.1055 21.399 4 Median NaN NaN NaN 0 0 Median 1.2734 1.129 NaN 1 0 Median 0.97117 1.0825 NaN 1 1 Median 1.0459 0.95162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.835 1.5728 NaN 1 0 Median 10725000 4957900 5766700 0 0 0 5517300 2399700 3117500 2773700 1462900 1310800 1271600 628030 643610 0 0 0 1162000 467220 694730 13311 2905;77 13854 67727;67728;67729;67730 68210;68211;68212;68213;68214 68211 5 HLCQQLQAEQAAAEKR HTSTQALVSELLPAKHLCQQLQAEQAAAEK LCQQLQAEQAAAEKRHREELEQSKQAAGGL K H L K R H 4 1 0 0 1 4 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 16 1 1879.9323 A0A087WY61;Q14980 Q14980 1365 1380 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 3.8155E-07 83.823 By MS/MS By MS/MS By matching 1 1 1 1.0197 1.1346 10.265 3 Median NaN NaN NaN 0 0 Median 1.2622 1.2016 NaN 1 0 Median 0.94671 1.1346 NaN 1 1 Median 1.0197 0.98438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7561700 3996600 3565100 0 0 0 2382700 1291700 1091100 4668100 2469900 2198200 510840 235010 275830 0 0 0 0 0 0 13312 2905;77 13855 67731;67732;67733 68215;68216;68217 68215 3 HLDALLR QYFDLEIYTTGRLEKHLDALLRQIRNIVEK YTTGRLEKHLDALLRQIRNIVEKHTDTDVL K H L L R Q 1 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 836.48684 Q8N3U4 Q8N3U4 608 614 STAG2 Cohesin subunit SA-2 yes yes 2 0.0011623 132.96 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 0.87952 0.92918 44.107 5 Median 0.87952 0.87707 NaN 1 0 Median 0.43713 0.3657 NaN 1 1 Median 0.84497 0.92918 NaN 1 0 Median 1.221 1.0377 NaN 1 0 Median 0.99304 1.0363 NaN 1 0 Median NaN NaN NaN 0 0 Median 30302000 18608000 11694000 1599700 850160 749550 10188000 7963800 2224600 9395200 5377000 4018200 3934000 1840800 2093300 5184400 2576000 2608400 0 0 0 13313 3369 13856 67734;67735;67736;67737;67738;67739 68218;68219;68220;68221;68222 68218 5 HLDEYASIASSSK KISRKLKLDWDGVRKHLDEYASIASSSKGG RKHLDEYASIASSSKGGRIGIEEFAKYLKL K H L S K G 2 0 0 1 0 0 1 0 1 1 1 1 0 0 0 4 0 0 1 0 0 0 13 0 1406.6678 Q7L5N7 Q7L5N7 363 375 LPCAT2 Lysophosphatidylcholine acyltransferase 2 yes yes 2 7.4494E-05 100.92 By MS/MS 1 1.2204 1.0642 NaN 1 Median NaN NaN NaN 0 0 Median 1.2204 1.0642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4223700 1981000 2242700 0 0 0 4223700 1981000 2242700 0 0 0 0 0 0 0 0 0 0 0 0 13314 3226 13857 67740 68223 68223 1 HLDFLKQPLATQK NSTQYNILEGLEKLKHLDFLKQPLATQKDL LKHLDFLKQPLATQKDLTGQVPTPVVKQTK K H L Q K D 1 0 0 1 0 2 0 0 1 0 3 2 0 1 1 0 1 0 0 0 0 0 13 1 1537.8617 P46821;D6RA32;D6RA40 P46821 507 519 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 0.00048365 52.576 By matching By MS/MS 1 2 1.011 1.1454 18.037 3 Plateau 0.85804 0.93514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83623 0.95686 25.439 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29709000 14961000 14748000 7482600 4225400 3257200 0 0 0 22226000 10735000 11491000 0 0 0 0 0 0 0 0 0 13315 2347 13858 67741;67742;67743 68224;68225 68224 2 HLDGEEDGSSDQSQASGTTGGR DTRPKVKAKKARKVKHLDGEEDGSSDQSQA GSSDQSQASGTTGGRRVSKALMASMARRAS K H L G R R 1 1 0 3 0 2 2 5 1 0 1 0 0 0 0 4 2 0 0 0 0 0 22 0 2189.9057 Q9UNF1;Q5H909;Q5H907 Q9UNF1 182 203 MAGED2 Melanoma-associated antigen D2 yes no 3 7.4706E-07 40.81 By MS/MS By MS/MS By MS/MS 1 1 1 0.9259 0.91013 9.7189 3 Plateau 0.82526 0.82004 NaN 1 0 Median 0.97692 0.84326 NaN 1 0 Median 0.9259 0.9823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4577000 2588600 1988400 1138300 622690 515600 1567900 783210 784660 1870800 1182700 688150 0 0 0 0 0 0 0 0 0 13316 4343 13859 67744;67745;67746 68226;68227;68228;68229 68229 4 HLDHVAALFPGDVDR LLPRHLEIIYAINQRHLDHVAALFPGDVDR HLDHVAALFPGDVDRLRRMSVIEEGDCKRI R H L D R L 2 1 0 3 0 0 0 1 2 0 2 0 0 1 1 0 0 0 0 2 0 0 15 0 1660.8322 P11216 P11216 411 425 PYGB Glycogen phosphorylase, brain form yes yes 3 0.0013564 46.964 By MS/MS 1 1.1972 1.0382 NaN 1 Median NaN NaN NaN 0 0 Median 1.1972 1.0382 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631300 1431600 1199700 0 0 0 2631300 1431600 1199700 0 0 0 0 0 0 0 0 0 0 0 0 13317 1956 13860 67747 68230 68230 1 HLDLASLK KDIRGETLNHHVNARHLDLASLKSIREFAA NHHVNARHLDLASLKSIREFAAKIIEEEER R H L L K S 1 0 0 1 0 0 0 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 895.51272 Q8NBN7;G8JLA1;K7EMY5 Q8NBN7 95 102 RDH13 Retinol dehydrogenase 13 yes no 2 0.0065767 70.67 By MS/MS By MS/MS 2 1 1.0792 0.92109 24.09 3 Median 1.1591 1.1311 29.045 2 0 Median 1.0792 0.90948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8141800 3882500 4259300 6087500 2903400 3184000 2054300 979050 1075200 0 0 0 0 0 0 0 0 0 0 0 0 13318 3409 13861 67748;67749;67750 68231;68232;68233 68231 3 HLDLSNVAGYK KRLRFFREVLLEVQKHLDLSNVAGYKAIYH EVQKHLDLSNVAGYKAIYHDLEQSIRAADA K H L Y K A 1 0 1 1 0 0 0 1 1 0 2 1 0 0 0 1 0 0 1 1 0 0 11 0 1215.6248 A0A0U1RR22;Q9UNF0 A0A0U1RR22 254 264 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.00011507 137.98 By matching By MS/MS 1 4 1.3428 1.139 34.243 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0413 1.0121 NaN 1 0 Median 1.456 1.2323 37.592 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26023000 10702000 15321000 0 0 0 0 0 0 11129000 5145200 5983600 14894000 5556900 9337200 0 0 0 0 0 0 13319 307 13862 67751;67752;67753;67754;67755 68234;68235;68236;68237 68234 4 HLDQIIPR LLARMKIDPEAFITRHLDQIIPRMTTQSPL PEAFITRHLDQIIPRMTTQSPLNQSSMNAM R H L P R M 0 1 0 1 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 990.56106 Q92616 Q92616 705 712 GCN1L1 Translational activator GCN1 yes yes 2 0.0023353 113.5 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 1 1 0.93129 0.83828 43.289 7 Median 0.93129 0.88 NaN 1 0 Median 0.99765 0.82487 20.629 2 0 Median 0.75525 0.83828 NaN 1 0 Median 0.9498 0.83756 NaN 1 0 Median 1.0085 1.0462 NaN 1 0 Median 0.3574 0.28997 NaN 1 1 Median 42647000 22376000 20271000 6253300 3183900 3069500 29724000 14690000 15034000 1730100 1015000 715010 774150 405940 368210 962970 471940 491040 3201900 2609000 592900 13320 3544 13863 67756;67757;67758;67759;67760;67761;67762 68238;68239;68240;68241;68242 68239 5 HLDSSSNERPDISSIQR EELQSLDIFLAELYKHLDSSSNERPDISSI DSSSNERPDISSIQRRIKKVTHDMDMCYGM K H L Q R R 0 2 1 2 0 1 1 0 1 2 1 0 0 0 1 5 0 0 0 0 0 0 17 1 1939.9348 P49902;Q5JUV6 P49902 405 421 NT5C2 Cytosolic purine 5-nucleotidase yes no 3 6.861E-06 65.172 By MS/MS By MS/MS By matching 1 2 1 0.92555 0.83978 18.404 4 Median 0.82476 0.81258 NaN 1 0 Median 0.92555 0.83763 5.0195 2 0 Median NaN NaN NaN 0 0 Median 1.2786 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19044000 10288000 8756700 9664700 5114200 4550500 9024700 4999100 4025600 0 0 0 354920 174290 180630 0 0 0 0 0 0 13321 2403 13864 67763;67764;67765;67766 68243;68244;68245;68246 68245 4 HLDSVLSDHTR VKEEGLAEETLKAARHLDSVLSDHTRNSAE KAARHLDSVLSDHTRNSAEGTEYFKMLVDV R H L T R N 0 1 0 2 0 0 0 0 2 0 2 0 0 0 0 2 1 0 0 1 0 0 11 0 1278.6317 A0A087X256;Q2M389;F8W1W1 A0A087X256 973 983 KIAA1033 WASH complex subunit 7 yes no 3 0.0012176 77.744 By MS/MS By MS/MS By matching 2 1 1 1.4741 1.313 23.425 4 Linear 0.77399 0.7711 13.894 2 1 Median 1.4205 1.1997 NaN 1 0 Median 0.95645 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7805800 3068700 4737200 2061300 1060000 1001400 4832000 1517800 3314200 912470 490830 421630 0 0 0 0 0 0 0 0 0 13322 129 13865 67767;67768;67769;67770 68247;68248;68249 68249 2 HLDTLHNFVSR SQYAKLLNTSRNQERHLDTLHNFVSRATNE NQERHLDTLHNFVSRATNELIWLNEKEEEE R H L S R A 0 1 1 1 0 0 0 0 2 0 2 0 0 1 0 1 1 0 0 1 0 0 11 0 1337.684 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 697 707 DST Dystonin yes no 3 7.252E-05 95.483 By MS/MS By MS/MS 1 1 0.88153 0.93157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88153 0.93157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9030500 5778000 3252500 0 0 0 0 0 0 9030500 5778000 3252500 0 0 0 0 0 0 0 0 0 13323 934 13866 67771;67772 68250;68251 68250 2 HLDVMDLSK GNQLGALPPQLCSLRHLDVMDLSKNQIRSI QLCSLRHLDVMDLSKNQIRSIPD_______ R H L S K N 0 0 0 2 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 1 0 0 9 0 1056.5274 H3BSW0;A0A3B3ISV5;Q8N9N7 H3BSW0 132 140 LRRC57 Leucine-rich repeat-containing protein 57 yes no 2 0.0015606 80.165 By MS/MS By matching 1 2 1.132 1.0708 31.737 3 Median 0.84432 0.78658 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2077 1.2605 23.063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15053000 6445300 8607700 8422800 3603200 4819600 0 0 0 6630200 2842100 3788100 0 0 0 0 0 0 0 0 0 13324 429 13867 67773;67774;67775 68252 68252 1 HLEAILTK TGEETEGMDGQIYKRHLEAILTKISLKNNL DGQIYKRHLEAILTKISLKNNLDHLLASLL R H L T K I 1 0 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 923.54402 Q9H583;Q5T3Q7 Q9H583 378 385 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0050681 77.923 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.5727 1.6418 25.301 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5727 1.753 NaN 1 1 Median 1.9066 1.7356 NaN 1 0 Median 1.5595 1.6418 NaN 1 1 Median 1.4252 1.217 33.916 2 0 Median 10285000 3691300 6593900 0 0 0 0 0 0 2804100 1046400 1757700 1222400 272930 949510 3209400 1258300 1951100 3049200 1113600 1935600 13325 3086 13868 67776;67777;67778;67779;67780 68253;68254;68255;68256 68256 4 HLEEAFTSEHWLVR RTRNAEIGNKDIKFKHLEEAFTSEHWLVRI KHLEEAFTSEHWLVRIYKVKAPDNRETLDH K H L V R I 1 1 0 0 0 0 3 0 2 0 2 0 0 1 0 1 1 1 0 1 0 0 14 0 1752.8584 Q8TCJ2 Q8TCJ2 755 768 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2;3 9.9137E-08 115.8 By MS/MS By MS/MS By matching 2 3 1 1.154 1.0264 21.64 6 Median 1.3859 1.3655 13.287 2 1 Median 1.2274 0.99252 8.9603 3 0 Plateau 0.96867 1.0614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37984000 15786000 22198000 21539000 9304000 12235000 14004000 5540500 8463600 2440600 941690 1498900 0 0 0 0 0 0 0 0 0 13326 3466 13869 67781;67782;67783;67784;67785;67786 68257;68258;68259;68260;68261 68257 5 HLEEIVEK GAAEEELQKSRVTVKHLEEIVEKLKGELES KSRVTVKHLEEIVEKLKGELESSDQVREHT K H L E K L 0 0 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 995.52876 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1176 1183 RRBP1 Ribosome-binding protein 1 yes no 2 0.00075719 151.04 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 0.9518 0.98033 52.544 7 Median 0.57749 0.5457 NaN 1 0 Median 0.72351 0.61821 90.546 2 0 Median NaN NaN NaN 0 0 Median 1.3294 1.1722 43.313 2 0 Median 0.85269 0.98033 NaN 1 0 Median 1.1824 0.99737 NaN 1 0 Median 26962000 12352000 14610000 2195100 1347600 847500 19751000 9053600 10697000 0 0 0 3761700 1307200 2454500 819630 455500 364130 435170 188310 246860 13327 4222 13870 67787;67788;67789;67790;67791;67792;67793 68262;68263;68264;68265;68266;68267;68268;68269 68265 8 HLEEIVHVEQGR NQKHLLRFIKRAMKRHLEEIVHVEQGREQT MKRHLEEIVHVEQGREQTLREVFESMNLTA R H L G R E 0 1 0 0 0 1 3 1 2 1 1 0 0 0 0 0 0 0 0 2 0 0 12 0 1444.7423 H0Y360;Q01433;A0A590UK85;A0A590UJY6;A0A590UJX5 H0Y360 387 398 AMPD2 AMP deaminase 2 yes no 3 0.00014719 75.695 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.96656 0.86207 13.729 5 Median 1.0981 1.08 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76346 0.8316 NaN 1 0 Median 0.97968 0.86207 NaN 1 0 Median 0.96656 1.0483 NaN 1 0 Median 0.89001 0.80379 NaN 1 0 Median 13608000 7457400 6150700 2374800 1086300 1288600 0 0 0 3675900 1983700 1692300 786910 356750 430160 5115300 3221600 1893700 1655100 809130 845990 13328 1141 13871 67794;67795;67796;67797;67798 68270;68271 68271 2 HLEEQIAK RLLEMVATHVGSVEKHLEEQIAKVDREYEE HVGSVEKHLEEQIAKVDREYEECMSEDLSE K H L A K V 1 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 966.51345 O14777 O14777 599 606 NDC80 Kinetochore protein NDC80 homolog yes yes 2 0.043245 36.185 By matching By MS/MS 1 1 0.99022 1.0024 7.3999 2 Median 0.98816 0.95128 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99229 1.0562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1721500 812920 908570 92809 46492 46317 0 0 0 1628700 766430 862250 0 0 0 0 0 0 0 0 0 13329 1495 13872 67799;67800 68272 68272 1 HLEEVLEMK EKETHLTNLRAERRKHLEEVLEMKQEALLA RAERRKHLEEVLEMKQEALLAAISEKDANI K H L M K Q 0 0 0 0 0 0 3 0 1 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1126.5692 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPD6;A0A0U1RQN0 X6RLX0 923 931 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 7.3085E-12 144.09 By MS/MS 2 1.223 1.0538 11.661 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.223 1.0538 11.661 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8398300 4022600 4375600 0 0 0 0 0 0 0 0 0 8398300 4022600 4375600 0 0 0 0 0 0 13330 3311 13873 67801;67802 68273;68274 68274 2 HLEFLGQLR QRSEQAVAQLEEEKKHLEFLGQLRQYDEDG LEEEKKHLEFLGQLRQYDEDGHTSEEKEGD K H L L R Q 0 1 0 0 0 1 1 1 1 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1111.6138 Q9NSK0;C9J8T5;C9JZE5;K7ELP9;Q6P597;K7ENJ3;K7EL76 Q9NSK0 146 154 KLC4;KLC3 Kinesin light chain 4;Kinesin light chain 3 no no 2 0.0083623 67.032 By MS/MS 1 1.0439 0.99883 NaN 1 Median 1.0439 0.99883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8562900 3823900 4739000 8562900 3823900 4739000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13331 4105;3161 13874 67803 68275 68275 1 HLEFMNQLK QKSEQSVAQLEEEKKHLEFMNQLKKYDDDI LEEEKKHLEFMNQLKKYDDDISPSEDKDTD K H L L K K 0 0 1 0 0 1 1 0 1 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1158.5856 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 147 155 KLC1 Kinesin light chain 1 yes no 2 0.06063 28.174 By MS/MS 1 1.0281 0.86957 NaN 1 Median NaN NaN NaN 0 0 Median 1.0281 0.86957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5903800 2879200 3024600 0 0 0 5903800 2879200 3024600 0 0 0 0 0 0 0 0 0 0 0 0 13332 896 13875 67804 68276 68276 1 HLEFSHDQYR TSKHSWGKTYGEHKRHLEFSHDQYRELQRY GEHKRHLEFSHDQYRELQRYAEEVGIFFTA R H L Y R E 0 1 0 1 0 1 1 0 2 0 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1330.6054 Q9NR45 Q9NR45 87 96 NANS Sialic acid synthase yes yes 2;3 3.4159E-11 177.06 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1436 1.0985 15.968 6 Median 1.0458 1.042 NaN 1 0 Median 1.3354 1.1617 8.9594 2 0 Median 1.1402 1.2643 18.818 2 0 Median 1.0229 0.90189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30511000 13974000 16537000 10734000 5016100 5717800 15577000 6755400 8821700 3441500 1922700 1518900 758790 279760 479030 0 0 0 0 0 0 13333 4079 13876 67805;67806;67807;67808;67809;67810 68277;68278;68279;68280;68281;68282;68283;68284 68282 8 HLEHSTIIYEDPQHHPLLR ASVGADGSVRMFDLRHLEHSTIIYEDPQHH STIIYEDPQHHPLLRLCWNKQDPNYLATMA R H L L R L 0 1 0 1 0 1 2 0 4 2 3 0 0 0 2 1 1 0 1 0 0 0 19 0 2334.1869 P61962;A0A087WWI6 P61962 208 226 DCAF7 DDB1- and CUL4-associated factor 7 yes no 4;5 1.7644E-13 99.344 By MS/MS By MS/MS 4 1 0.64288 0.63699 56.133 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62863 0.61747 59.252 4 0 Median 0.97386 0.83548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39490000 24888000 14602000 0 0 0 0 0 0 35432000 22745000 12687000 4058000 2142700 1915300 0 0 0 0 0 0 13334 2563 13877 67811;67812;67813;67814;67815 68285;68286;68287;68288;68289 68287 4 HLEIFHTEFQNLLDADKNEDLGR QDELARKCEQVLIEKHLEIFHTEFQNLLDA FQNLLDADKNEDLGRMYNLVSRIQDGLGEL K H L G R M 1 1 2 3 0 1 3 1 2 1 4 1 0 2 0 0 1 0 0 0 0 0 23 1 2753.3409 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 275 297 CUL1 Cullin-1 yes no 4 0.0079143 21.37 By MS/MS 1 1.0866 1.0819 NaN 1 Median NaN NaN NaN 0 0 Median 1.0866 1.0819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5076100 2475100 2601000 0 0 0 5076100 2475100 2601000 0 0 0 0 0 0 0 0 0 0 0 0 13335 256 13878 67816 68290;68291 68291 2 HLEIIYAINQR LERWPVSMFEKLLPRHLEIIYAINQRHLDH LLPRHLEIIYAINQRHLDHVAALFPGDVDR R H L Q R H 1 1 1 0 0 1 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1368.7514 P11216 P11216 400 410 PYGB Glycogen phosphorylase, brain form yes yes 2;3 0.028804 31.934 By MS/MS By matching By matching 2 1 1 0.94989 0.94085 27.787 4 Median NaN NaN NaN 0 0 Median 1.1372 0.98544 15.046 2 0 Median NaN NaN NaN 0 0 Median 0.69967 0.58403 NaN 1 0 Median 0.88254 0.99913 NaN 1 0 Median NaN NaN NaN 0 0 Median 10564000 4883900 5680100 0 0 0 6574300 2929900 3644300 0 0 0 218150 122890 95263 3771600 1831100 1940500 0 0 0 13336 1956 13879 67817;67818;67819;67820 68292;68293 68293 2 HLEIIYEINQK LERWPVDLVEKLLPRHLEIIYEINQKHLDR LLPRHLEIIYEINQKHLDRIVALFPKDVDR R H L Q K H 0 0 1 0 0 1 2 0 1 3 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1398.7507 P06737;E9PK47 P06737 400 410 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 7.1618E-08 131.44 By MS/MS 3 1.2953 1.2541 4.436 2 Median 1.2953 1.2541 4.436 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24870000 10330000 14540000 24870000 10330000 14540000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13337 1874 13880 67821;67822;67823 68294;68295;68296 68294 3 HLEINPDHPIVETLR ALRDNSTMGYMMAKKHLEINPDHPIVETLR HLEINPDHPIVETLRQKAEADKNDKAVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 2 2 0 0 0 2 0 1 0 0 1 0 0 15 0 1781.9424 P08238 P08238 625 639 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2;3;4 1.5205E-27 204.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 4 4 2 1 1 0.89176 0.82519 27.221 21 Median 0.87346 0.82519 33.933 9 0 Median 0.87256 0.75514 11.174 4 0 Median 0.9429 0.99788 22.928 4 1 Median 0.92624 0.79331 1.7199 2 0 Median 1.2621 1.2793 NaN 1 0 Median 1.1886 0.9677 NaN 1 0 Median 1065000000 551360000 513680000 626590000 330900000 295690000 341540000 173910000 167620000 70941000 34446000 36494000 9044100 4619100 4424900 15439000 6784200 8654500 1486800 700290 786560 13338 1899 13881 67824;67825;67826;67827;67828;67829;67830;67831;67832;67833;67834;67835;67836;67837;67838;67839;67840;67841;67842;67843;67844;67845 68297;68298;68299;68300;68301;68302;68303;68304;68305;68306;68307;68308;68309;68310;68311;68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323;68324;68325 68307 29 HLEINPDHSIIETLR ALRDNSTMGYMAAKKHLEINPDHSIIETLR HLEINPDHSIIETLRQKAEADKNDKSVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 3 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1785.9373 P07900 P07900 633 647 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2;3;4 4.5224E-27 203.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 9 3 2 1 3 0.97158 0.88557 20.525 25 Median 0.97752 0.96609 5.554 7 0 Median 0.94602 0.81973 14.276 9 0 Median 0.95025 1.0024 28.679 3 0 Median 0.96486 0.82046 5.0572 2 0 Median 1.2231 1.2454 NaN 1 0 Median 1.0705 0.87136 32.28 3 0 Median 746740000 365470000 381260000 407260000 196730000 210530000 252590000 124860000 127730000 66158000 33923000 32236000 6503800 3250100 3253700 11451000 5335600 6115500 2770200 1380200 1390100 13339 1894 13882 67846;67847;67848;67849;67850;67851;67852;67853;67854;67855;67856;67857;67858;67859;67860;67861;67862;67863;67864;67865;67866;67867;67868;67869;67870 68326;68327;68328;68329;68330;68331;68332;68333;68334;68335;68336;68337;68338;68339;68340;68341;68342;68343;68344;68345;68346;68347;68348;68349;68350 68333 24 HLEMNPHFGSHR LVFLPGWNLIYTMQKHLEMNPHFGSHRYQI MQKHLEMNPHFGSHRYQILPLHSQIPREEQ K H L H R Y 0 1 1 0 0 0 1 1 3 0 1 0 1 1 1 1 0 0 0 0 0 0 12 0 1460.6732 Q08211 Q08211 669 680 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.1885E-13 131.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 7 6 3 5 4 1.2071 1.0975 17.478 26 Median 0.9724 0.97449 11.894 3 0 Median 1.3016 1.0967 16.136 7 2 Median 1.1946 1.2818 11.241 5 1 Median 1.446 1.2358 8.1205 3 0 Median 0.94971 0.96966 15.356 4 3 Median 1.285 1.0903 24.917 4 0 Median 187140000 88765000 98377000 10260000 4305800 5954000 68472000 29593000 38880000 30563000 15509000 15054000 8725000 3860700 4864400 60348000 31685000 28663000 8774200 3812300 4962000 13340 2736 13883;13884 67871;67872;67873;67874;67875;67876;67877;67878;67879;67880;67881;67882;67883;67884;67885;67886;67887;67888;67889;67890;67891;67892;67893;67894;67895;67896;67897;67898 68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361;68362;68363;68364;68365;68366;68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384 68365 1419 34 HLEPEPEEEIIAEDYDDDPVDYEATR PVALQTRLAKRGILKHLEPEPEEEIIAEDY AEDYDDDPVDYEATRLEGLPPSWYKVFDPS K H L T R L 2 1 0 5 0 0 7 0 1 2 1 0 0 0 3 0 1 0 2 1 0 0 26 0 3088.3309 O60828 O60828 19 44 PQBP1 Polyglutamine-binding protein 1 yes yes 3 3.5897E-09 48.867 By MS/MS 1 0.62795 0.61575 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62795 0.61575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2444800 1320500 1124300 0 0 0 0 0 0 2444800 1320500 1124300 0 0 0 0 0 0 0 0 0 13341 1633 13885 67899 68385 68385 1 HLEQRDEPQEPSNKVPEQQR RISRLERELREHQERHLEQRDEPQEPSNKV DEPQEPSNKVPEQQRQITLKTTPASGERGI R H L Q R Q 0 2 1 1 0 4 4 0 1 0 1 1 0 0 3 1 0 0 0 1 0 0 20 2 2443.184 P12270 P12270 1624 1643 TPR Nucleoprotein TPR yes yes 4;5 0.03676 12.663 By matching By MS/MS 2 3 0.551 0.62669 15.614 5 Median 0.58175 0.57716 11.644 2 0 Median NaN NaN NaN 0 0 Median 0.54875 0.65943 17.223 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8098100 5108100 2990100 2430800 1564900 865880 0 0 0 5667300 3543100 2124200 0 0 0 0 0 0 0 0 0 13342 1978 13886 67900;67901;67902;67903;67904 68386;68387 68386 2 HLEVDVR SYEHRLHLKPGRLAKHLEVDVRIIEPQGLR LKPGRLAKHLEVDVRIIEPQGLRSLHVLDT K H L V R I 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 866.46102 CON__Q9TRI1 CON__Q9TRI1 208 214 yes yes 2 0.016269 84.244 By MS/MS 1 0.11558 0.098119 NaN 1 Median NaN NaN NaN 0 0 Median 0.11558 0.098119 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3841400 3134600 706810 0 0 0 3841400 3134600 706810 0 0 0 0 0 0 0 0 0 0 0 0 + 13343 793 13887 67905 68388 68388 1 HLEVISGQK YKAVKSEANATQLLRHLEVISGQKLTRLFT ATQLLRHLEVISGQKLTRLFTSNQILTSEC R H L Q K L 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1009.5556 Q8TCG1;A0A087X211;F8WAX6 Q8TCG1 32 40 KIAA1524 Protein CIP2A yes no 2 0.0014243 90.657 By MS/MS 2 1.4225 1.2648 3.9296 2 Median NaN NaN NaN 0 0 Median 1.4225 1.2648 3.9296 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2948400 1108200 1840200 0 0 0 2948400 1108200 1840200 0 0 0 0 0 0 0 0 0 0 0 0 13344 127 13888 67906;67907 68389;68390 68389 2 HLEVLNVSENK LSSWDEVIHIADQLRHLEVLNVSENKLKFP DQLRHLEVLNVSENKLKFPSGSVLTGTLSV R H L N K L 0 0 2 0 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1280.6725 Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8YER9;A0A2R8Y7E7;A0A2R8YFL4;A0A2R8Y809;A0A2R8Y4V6;A0A2R8Y6Q1;A0A2R8Y6L2;A0A2R8Y897;A0A2R8Y4E7 Q15813 180 190 TBCE Tubulin-specific chaperone E yes no 2 0.00044522 107.79 By MS/MS 1 0.75847 0.64561 NaN 1 Median NaN NaN NaN 0 0 Median 0.75847 0.64561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4929200 2948900 1980300 0 0 0 4929200 2948900 1980300 0 0 0 0 0 0 0 0 0 0 0 0 13345 373 13889 67908 68391 68391 1 HLFAILGGSEGK ARQCSDSSAMESLTKHLFAILGGSEGKLTV LTKHLFAILGGSEGKLTVVAQKMSVLSGIG K H L G K L 1 0 0 0 0 0 1 3 1 1 2 1 0 1 0 1 0 0 0 0 0 0 12 0 1227.6612 Q92616 Q92616 341 352 GCN1L1 Translational activator GCN1 yes yes 2 0.0010099 86.898 By MS/MS 1 0.82896 0.72858 NaN 1 Median NaN NaN NaN 0 0 Median 0.82896 0.72858 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8178200 4706600 3471600 0 0 0 8178200 4706600 3471600 0 0 0 0 0 0 0 0 0 0 0 0 13346 3544 13890 67909 68392 68392 1 HLFETDVQNNK RSQESDGVEYIFISKHLFETDVQNNKFIEY FISKHLFETDVQNNKFIEYGEYKNNYYGTS K H L N K F 0 0 2 1 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1343.647 U5GXS2;S4R337;Q5T2T1 U5GXS2 184 194 MPP7 MAGUK p55 subfamily member 7 yes no 2 0.007168 42.869 By MS/MS By matching 1 1 1.1659 1.0754 16.467 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1363 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1963 0.95723 NaN 1 0 Median 3625700 1918600 1707100 0 0 0 0 0 0 1827800 1088700 739100 0 0 0 0 0 0 1797900 829880 967980 13347 3084 13891 67910;67911 68393 68393 1 HLFFTVPR LLNPCLEKRKETTKRHLFFTVPRVVAVSPQ RKETTKRHLFFTVPRVVAVSPQMRLVEDNP R H L P R V 0 1 0 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 8 0 1015.5603 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3555 3562 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0055403 75.189 By matching By MS/MS 1 1 0.73896 0.76255 25.777 2 Median 0.6264 0.6355 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87175 0.91502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24251000 12500000 11750000 2580900 1355800 1225100 0 0 0 21670000 11144000 10525000 0 0 0 0 0 0 0 0 0 13348 991 13892 67912;67913 68394 68394 1 HLFGQPNSAYDFK VSKMLKDYDWINAERHLFGQPNSAYDFKTN ERHLFGQPNSAYDFKTNNPKEAGQRLQKLQ R H L F K T 1 0 1 1 0 1 0 1 1 0 1 1 0 2 1 1 0 0 1 0 0 0 13 0 1522.7205 O95347;A0A0C4DGE5 O95347 946 958 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 3.276E-05 124.67 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1.0557 0.97293 38.963 8 Median 0.63639 0.6159 71.116 2 0 Median NaN NaN NaN 0 0 Median 1.0378 1.1062 2.669 2 0 Median 1.0677 0.92953 12.012 3 0 Median NaN NaN NaN 0 0 Median 0.73154 0.60753 NaN 1 0 Median 88381000 44236000 44146000 25873000 12779000 13094000 0 0 0 48087000 24483000 23604000 13374000 6363600 7010800 0 0 0 1046200 609500 436720 13349 1766 13893 67914;67915;67916;67917;67918;67919;67920;67921 68395;68396;68397;68398;68399;68400;68401;68402;68403 68398 9 HLFLTSK FYHDWNDKEIEVLNKHLFLTSKPMVYLVNL KEIEVLNKHLFLTSKPMVYLVNLSEKDYIR K H L S K P 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 844.48069 J3KQ32;Q9NTK5;C9JCJ9 J3KQ32 237 243 OLA1 Obg-like ATPase 1 yes no 2 0.0043843 100.74 By matching By MS/MS 1 1 1.2075 1.1078 9.2063 2 Median 1.2014 1.1823 NaN 1 0 Median 1.2137 1.038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6289900 2951200 3338600 661530 289510 372020 5628300 2661700 2966600 0 0 0 0 0 0 0 0 0 0 0 0 13350 1315 13894 67922;67923 68404;68405 68405 2 HLFLTSKPMVYLVNLSEK FYHDWNDKEIEVLNKHLFLTSKPMVYLVNL LTSKPMVYLVNLSEKDYIRKKNKWLIKIKE K H L E K D 0 0 1 0 0 0 1 0 1 0 4 2 1 1 1 2 1 0 1 2 0 0 18 1 2118.1547 J3KQ32;Q9NTK5;C9JCJ9 J3KQ32 237 254 OLA1 Obg-like ATPase 1 yes no 3 1.7676E-06 72.184 By MS/MS By matching 1 1 0.97377 1.014 27.436 2 Median NaN NaN NaN 0 0 Median 0.92362 0.83519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0267 1.2311 NaN 1 0 Median NaN NaN NaN 0 0 Median 12263000 6076900 6186500 0 0 0 3945000 2034900 1910000 0 0 0 0 0 0 8318500 4042000 4276500 0 0 0 13351 1315 13895 67924;67925 68406;68407 68406 2 HLFTGPVLSK GVAIGDQILDLSIIKHLFTGPVLSKHQDVF LSIIKHLFTGPVLSKHQDVFNQPTLNSFMG K H L S K H 0 0 0 0 0 0 0 1 1 0 2 1 0 1 1 1 1 0 0 1 0 0 10 0 1097.6233 P16930;H0YLC7 P16930 48 57 FAH Fumarylacetoacetase yes no 2 4.3998E-05 138.4 By MS/MS By MS/MS 1 1 1.068 0.948 15.171 2 Median 0.92096 0.85157 NaN 1 0 Median 1.2385 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29710000 13071000 16639000 14714000 7056400 7657500 14996000 6014800 8981100 0 0 0 0 0 0 0 0 0 0 0 0 13352 2032 13896 67926;67927 68408;68409 68408 2 HLGHVQQLLR KEGVENLRRVATDRRHLGHVQQLLRSSNRR ATDRRHLGHVQQLLRSSNRRLEQLHGELRE R H L L R S 0 1 0 0 0 2 0 1 2 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1199.6887 Q6P5Z2 Q6P5Z2 49 58 PKN3 Serine/threonine-protein kinase N3 yes yes 3 0.00095581 56.432 By MS/MS By matching 1 1 1.0457 1.1217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0457 1.1217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2192300 1093600 1098600 0 0 0 0 0 0 1507100 462940 1044200 0 0 0 0 0 0 685120 630700 54425 13353 3162 13897 67928;67929 68410 68410 1 HLGLLEK RQREHRERSQPGFRKHLGLLEKKKDYKLRA RSQPGFRKHLGLLEKKKDYKLRADDYRKKQ K H L E K K 0 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 Q9Y3A2 Q9Y3A2 27 33 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.014239 74.832 By matching By MS/MS 2 1 1.312 1.1478 10.325 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2133 1.2239 13.628 2 0 Median 1.3731 1.1478 NaN 1 0 Median 5032500 2348200 2684400 0 0 0 0 0 0 0 0 0 0 0 0 3699300 1800200 1899100 1333200 547980 785210 13354 4410 13898 67930;67931;67932 68411;68412 68411 2 HLGTLLR SIKGEVDEEDAALYRHLGTLLRHCVMIATA EEDAALYRHLGTLLRHCVMIATAGDRTEEF R H L L R H 0 1 0 0 0 0 0 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 808.49192 Q9NPQ8;H0YEN0 Q9NPQ8 250 256 RIC8A Synembryn-A yes no 2 0.029918 50.025 By MS/MS 1 0.96164 0.83264 NaN 1 Median NaN NaN NaN 0 0 Median 0.96164 0.83264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4944500 2458600 2485900 0 0 0 4944500 2458600 2485900 0 0 0 0 0 0 0 0 0 0 0 0 13355 4057 13899 67933 68413 68413 1 HLGTLNFGGIR LFKPLVLRRQYLRRKHLGTLNFGGIRVGNG LRRKHLGTLNFGGIRVGNGPTEEDAEIIQH K H L I R V 0 1 1 0 0 0 0 3 1 1 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1183.6462 Q93050;B7Z641;B7Z2A9;F5H1T6;K7ERA0;K7ERA6 Q93050 667 677 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.0010461 83.168 By MS/MS 1 1.0866 1.0572 NaN 1 Median 1.0866 1.0572 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20285000 8801100 11484000 20285000 8801100 11484000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13356 3576 13900 67934 68414 68414 1 HLGVCISVANNR EAVKLCDSYEIRPGKHLGVCISVANNRLFV PGKHLGVCISVANNRLFVGSIPKNKTKENI K H L N R L 1 1 2 0 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1338.6827 O43390;B4DT28 O43390 236 247 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 2.3898E-21 155.84 By matching By MS/MS By matching 1 3 1 1.0546 1.0487 37.732 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45518 0.48245 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0619 1.0703 4.4904 3 2 Median 0.7499 0.65819 NaN 1 0 Median 65373000 30995000 34378000 0 0 0 0 0 0 3237600 2300200 937350 0 0 0 61429000 28359000 33069000 707010 335930 371080 13357 1568 13901 67935;67936;67937;67938;67939 68415;68416;68417;68418 68416 4 HLGVILPAVMLALK VLAFLSSVAGDALTRHLGVILPAVMLALKE RHLGVILPAVMLALKEKLGTPDEQLEMANC R H L L K E 2 0 0 0 0 0 0 1 1 1 4 1 1 0 1 0 0 0 0 2 0 0 14 0 1473.9105 Q92616 Q92616 2108 2121 GCN1L1 Translational activator GCN1 yes yes 2 0.00039392 71.501 By MS/MS 3 1.0141 0.89902 22.515 3 Plateau NaN NaN NaN 0 0 Median 1.0141 0.89902 22.515 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6540600 3246800 3293800 0 0 0 6540600 3246800 3293800 0 0 0 0 0 0 0 0 0 0 0 0 13358 3544 13902 67940;67941;67942 68419;68420 68419 2 HLGYKPEEYK TWAGRPQDGVAVLVRHLGYKPEEYKMGRTK AVLVRHLGYKPEEYKMGRTKIFIRFPKTLF R H L Y K M 0 0 0 0 0 0 2 1 1 0 1 2 0 0 1 0 0 0 2 0 0 0 10 1 1262.6295 F5H6E2;O00159 F5H6E2 676 685 MYO1C Unconventional myosin-Ic yes no 3 0.072391 13.353 By MS/MS 1 0.992 1.0531 NaN 1 Median 0.992 1.0531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 679520 262260 417250 679520 262260 417250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13359 1042 13903 67943 68421 68421 1 HLGYTLCK GTRDTVLKLLLNGARHLGYTLCKQIGTLLA LLLNGARHLGYTLCKQIGTLLAELREYNLE R H L C K Q 0 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 1 0 0 0 8 0 990.49569 Q7Z6Z7;H0Y659;A0A087X146 Q7Z6Z7 3629 3636 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0087245 79.469 By MS/MS 1 1.2941 1.1288 NaN 1 Median NaN NaN NaN 0 0 Median 1.2941 1.1288 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4928400 2572400 2356000 0 0 0 4928400 2572400 2356000 0 0 0 0 0 0 0 0 0 0 0 0 13360 3253 13904 67944 68422 68422 1 HLHESLLQQLQDSVQNLDGHVR TKNPSFSEEPWLEIKHLHESLLQQLQDSVQ QQLQDSVQNLDGHVREHDSYQVCVTDLNTT K H L V R E 0 1 1 2 0 4 1 1 3 0 5 0 0 0 0 2 0 0 0 2 0 0 22 0 2565.3048 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2228 2249 SYNE2 Nesprin-2 yes no 4 5.9767E-07 42.639 By MS/MS 1 1.4908 1.2271 NaN 1 Median NaN NaN NaN 0 0 Median 1.4908 1.2271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7949400 3172500 4776900 0 0 0 7949400 3172500 4776900 0 0 0 0 0 0 0 0 0 0 0 0 13361 3521 13905 67945 68423;68424 68423 2 HLHPIQTSFQEATASK YKEVVVSVPQRIMARHLHPIQTSFQEATAS LHPIQTSFQEATASKVIVAVGDRSSNLRGE R H L S K V 2 0 0 0 0 2 1 0 2 1 1 1 0 1 1 2 2 0 0 0 0 0 16 0 1793.906 Q8TEM1 Q8TEM1 1561 1576 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 9.5857E-20 185.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 4 3 1 1 0.90279 0.85279 38.224 14 Median 1.306 1.286 30.254 2 1 Median 0.90279 0.8093 36.754 4 2 Median 0.78583 0.85279 6.8326 4 0 Median 1.3236 1.2414 2.6854 2 0 Median 0.427 0.44759 NaN 1 0 Median 0.65127 0.53877 NaN 1 0 Median 385740000 194020000 191720000 30931000 12349000 18582000 166600000 84700000 81901000 143540000 77065000 66477000 38148000 15517000 22631000 5151200 3633700 1517400 1369000 757900 611080 13362 3477 13906 67946;67947;67948;67949;67950;67951;67952;67953;67954;67955;67956;67957;67958;67959;67960 68425;68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436;68437;68438;68439;68440;68441;68442;68443;68444;68445;68446;68447;68448;68449;68450 68433 26 HLHQAVSIGQSLK AQHKALEDDIINHNKHLHQAVSIGQSLKVL NKHLHQAVSIGQSLKVLSSREDKDMVQSKL K H L L K V 1 0 0 0 0 2 0 1 2 1 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1416.7837 E9PHM6;F6QMI7;Q03001;A0A0U1RQJ2 E9PHM6 3471 3483 DST Dystonin yes no 3 0.0006326 48.229 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.0209 1.0841 14.897 5 Median 0.79849 0.79141 NaN 1 0 Median 1.2199 1.0841 NaN 1 0 Median 1.0022 1.0966 4.1517 2 0 Median 1.1934 1.1208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21333000 10197000 11137000 2709600 1337200 1372400 13696000 6411100 7285300 4044600 1978900 2065700 882740 469420 413320 0 0 0 0 0 0 13363 934 13907 67961;67962;67963;67964;67965 68451;68452;68453;68454 68454 4 HLHSIMVLK CPKSLLIPYLDNLVKHLHSIMVLKLQELIQ LDNLVKHLHSIMVLKLQELIQKGTKLVLEQ K H L L K L 0 0 0 0 0 0 0 0 2 1 2 1 1 0 0 1 0 0 0 1 0 0 9 0 1076.6165 O00410;H0Y8C6 O00410 488 496 IPO5 Importin-5 yes no 2 0.0018211 77.282 By MS/MS 1 1.3285 1.1263 NaN 1 Median NaN NaN NaN 0 0 Median 1.3285 1.1263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8146900 2940700 5206200 0 0 0 8146900 2940700 5206200 0 0 0 0 0 0 0 0 0 0 0 0 13364 1460 13908 67966 68455;68456 68456 2 HLHTAMFTISSDQR TKMQELALSEGALPRHLHTAMFTISSDQRM RHLHTAMFTISSDQRMLTNRQLSRHLVGLW R H L Q R M 1 1 0 1 0 1 0 0 2 1 1 0 1 1 0 2 2 0 0 0 0 0 14 0 1642.7886 O75165;A0A3B3IRM0 O75165 613 626 DNAJC13 DnaJ homolog subfamily C member 13 yes no 3 0.043607 30.308 By MS/MS 1 1.34 1.1272 NaN 1 Median NaN NaN NaN 0 0 Median 1.34 1.1272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1920100 828330 1091700 0 0 0 1920100 828330 1091700 0 0 0 0 0 0 0 0 0 0 0 0 13365 1653 13909 67967 68457 68457 0 HLIEMGYLQGGK DGELYENGSFYFAKRHLIEMGYLQGGKMAY AKRHLIEMGYLQGGKMAYYEMRAEHSVDID R H L G K M 0 0 0 0 0 1 1 3 1 1 2 1 1 0 0 0 0 0 1 0 0 0 12 0 1344.686 Q8NFW8;F5GYM0 Q8NFW8 223 234 CMAS N-acylneuraminate cytidylyltransferase yes no 2;3 9.0396E-52 199.46 By MS/MS By MS/MS By matching 4 3 1 1.1881 1.1561 18.255 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1247 1.0888 18.118 4 2 Median 1.3929 1.255 3.974 3 1 Median NaN NaN NaN 0 0 Median 0.96833 0.86017 NaN 1 0 Median 111520000 50128000 61389000 0 0 0 0 0 0 63542000 30985000 32557000 47219000 18737000 28481000 0 0 0 756400 405470 350930 13366 3441 13910;13911 67968;67969;67970;67971;67972;67973;67974;67975 68458;68459;68460;68461;68462;68463;68464;68465;68466 68462 1728 9 HLIEQDFPGMR LLVGQYSTGKTTFIRHLIEQDFPGMRIGPE TFIRHLIEQDFPGMRIGPEPTTDSFIAVMH R H L M R I 0 1 0 1 0 1 1 1 1 1 1 0 1 1 1 0 0 0 0 0 0 0 11 0 1341.65 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 91 101 EHD1 EH domain-containing protein 1 yes no 2 1.5482E-05 126.41 By MS/MS By MS/MS By matching 2 2 1 1.1207 1.1023 37.101 5 Median NaN NaN NaN 0 0 Median 1.0032 0.87174 16.008 2 0 Median 1.1289 1.1493 5.9015 2 2 Median NaN NaN NaN 0 0 Median 1.9423 2.1103 NaN 1 0 Median NaN NaN NaN 0 0 Median 20974000 9732600 11241000 0 0 0 3759900 1596400 2163500 14235000 6713300 7521400 0 0 0 2979100 1422800 1556300 0 0 0 13367 5 13912 67976;67977;67978;67979;67980 68467;68468;68469;68470 68468 4 HLIFVLNK SPHIETYLKKEKPWKHLIFVLNKCDLVPTW KKEKPWKHLIFVLNKCDLVPTWATKRWVAV K H L N K C 0 0 1 0 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 8 0 982.59639 Q13823;H0YG10 Q13823 249 256 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0050982 77.748 By matching By matching By MS/MS By matching 1 1 1 1 1.1876 1.0151 56.142 4 Median 2.7239 2.671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3389 1.1813 NaN 1 0 Median 0.74115 0.76433 NaN 1 0 Median 1.0534 0.87235 NaN 1 0 Median 8384500 4069100 4315400 1290700 498280 792460 0 0 0 0 0 0 322910 132540 190370 5497300 2881100 2616200 1273600 557270 716300 13368 2839 13913 67981;67982;67983;67984 68471;68472 68472 2 HLILPEK DRWLSCETQLPVSFRHLILPEKYPPPTELL TQLPVSFRHLILPEKYPPPTELLDLQPLPV R H L E K Y 0 0 0 0 0 0 1 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 848.51199 O75643;A0A494C1A5 O75643 1288 1294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0043843 100.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1.0789 0.9466 16.865 7 Median NaN NaN NaN 0 0 Median 0.9835 0.86514 12.726 2 0 Median 0.74652 0.83055 NaN 1 0 Median 1.1144 1.0144 2.7367 2 0 Median 1.2616 1.325 NaN 1 1 Median 1.0789 0.92431 NaN 1 0 Median 31009000 14781000 16228000 0 0 0 11285000 5349200 5935400 6325600 3294800 3030700 4988100 2331800 2656300 3986800 1582200 2404600 4423700 2222600 2201100 13369 1688 13914 67985;67986;67987;67988;67989;67990;67991 68473;68474;68475;68476;68477;68478;68479;68480;68481;68482;68483;68484 68478 12 HLILPEKYPPPTELLDLQPLPVSALR DRWLSCETQLPVSFRHLILPEKYPPPTELL TELLDLQPLPVSALRNSAFESLYQDKFPFF R H L L R N 1 1 0 1 0 1 2 0 1 1 7 1 0 0 6 1 1 0 1 1 0 0 26 1 2948.6739 O75643;A0A494C1A5 O75643 1288 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3;4 6.1259E-13 50.851 By MS/MS By MS/MS 1 2 0.31892 0.35683 4.9257 3 Median NaN NaN NaN 0 0 Median 0.36355 0.34637 NaN 1 0 Median 0.30991 0.36888 4.6991 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6340200 4680600 1659500 0 0 0 2183200 1637500 545730 4156900 3043100 1113800 0 0 0 0 0 0 0 0 0 13370 1688 13915 67992;67993;67994 68485;68486;68487;68488 68485 4 HLIPAANTGESK ELKLICCDILDVLDKHLIPAANTGESKVFY LDKHLIPAANTGESKVFYYKMKGDYHRYLA K H L S K V 2 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 12 0 1236.6463 P62258 P62258 107 118 YWHAE 14-3-3 protein epsilon yes yes 2;3 1.4644E-06 99.283 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 6 4 4 2 3 0.96389 0.86753 9.6232 22 Median 0.90789 0.82813 6.9691 3 0 Median 1.0045 0.84201 10.452 6 0 Median 0.91396 0.87827 4.7174 4 1 Median 1.0713 0.9029 8.2461 4 0 Linear 0.98046 1.0082 2.3092 2 0 Median 1.0291 0.86553 14.146 3 0 Median 145750000 72661000 73086000 66414000 33711000 32704000 33702000 16809000 16893000 26501000 13212000 13288000 14727000 6876100 7851300 2397500 1172700 1224800 2004800 880640 1124200 13371 2576 13916 67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006;68007;68008;68009;68010;68011;68012;68013;68014;68015;68016 68489;68490;68491;68492;68493;68494;68495;68496;68497;68498;68499;68500;68501;68502;68503;68504;68505;68506;68507;68508;68509;68510;68511;68512;68513;68514;68515;68516;68517;68518;68519 68503 31 HLIPQESR DNSEKPSGKRLCKTKHLIPQESRRGLPLTG KRLCKTKHLIPQESRRGLPLTGEYYVENAD K H L S R R 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 8 0 978.52468 Q6W2J9;H7C2V9;A6NE70;H7BZ37;H7C231 Q6W2J9 1367 1374 BCOR BCL-6 corepressor yes no 2 0.028622 40.268 By MS/MS 1 0.76618 0.85356 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76618 0.85356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 841710 446900 394810 0 0 0 0 0 0 841710 446900 394810 0 0 0 0 0 0 0 0 0 13372 3191 13917 68017 68520;68521 68521 2 HLISSLQNHNHQLK LAANEQAGPINREMRHLISSLQNHNHQLKG RHLISSLQNHNHQLKGEVLRYKRKLREAQS R H L L K G 0 0 2 0 0 2 0 0 3 1 3 1 0 0 0 2 0 0 0 0 0 0 14 0 1667.8856 O75150;H3BP71;Q5VTR2 Q5VTR2 478 491 RNF40;RNF20 E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A no no 2;3;4 5.9282E-08 154.28 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 7 2 1 1.1584 1.0526 30.799 16 Median NaN NaN NaN 0 0 Median 1.2571 1.0628 9.224 3 1 Plateau 1.1276 1.2131 33.418 3 0 Median 1.2495 1.0733 37.823 7 0 Median 0.9286 1.0943 24.265 2 0 Median 0.92909 0.78007 NaN 1 0 Median 58554000 26540000 32013000 0 0 0 25771000 11451000 14320000 11987000 5554700 6432200 17373000 7925100 9448000 3125800 1461800 1664000 297350 148220 149130 13373 3112;1648 13918 68018;68019;68020;68021;68022;68023;68024;68025;68026;68027;68028;68029;68030;68031;68032;68033 68522;68523;68524;68525;68526;68527;68528;68529;68530;68531 68524 10 HLISSLQNHNHQLKGDAQR LAANEQAGPINREMRHLISSLQNHNHQLKG SLQNHNHQLKGDAQRYKRKLREVQAEIGKL R H L Q R Y 1 1 2 1 0 3 0 1 3 1 3 1 0 0 0 2 0 0 0 0 0 0 19 1 2195.1308 O75150;H3BP71 O75150 485 503 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 4;5 0.00083579 28.472 By MS/MS 2 0.97704 1.1075 3.2718 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97704 1.1075 3.2718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7634400 3832200 3802200 0 0 0 0 0 0 7634400 3832200 3802200 0 0 0 0 0 0 0 0 0 13374 1648 13919 68034;68035 68532;68533;68534;68535 68535 4 HLISSLQNHNHQLKGEVLR LAANEQAGPINREMRHLISSLQNHNHQLKG SLQNHNHQLKGEVLRYKRKLREAQSDLNKT R H L L R Y 0 1 2 0 0 2 1 1 3 1 4 1 0 0 0 2 0 0 0 1 0 0 19 1 2222.2032 Q5VTR2 Q5VTR2 478 496 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 4;5 3.3371E-08 70.584 By MS/MS 2 1.0182 1.1534 9.7169 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0182 1.1534 9.7169 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12514000 6036800 6477100 0 0 0 0 0 0 12514000 6036800 6477100 0 0 0 0 0 0 0 0 0 13375 3112 13920 68036;68037 68536;68537;68538;68539 68536 4 HLIVLINK QTREHAMLAKTAGVKHLIVLINKMDDPTVN AKTAGVKHLIVLINKMDDPTVNWSNERYEE K H L N K M 0 0 1 0 0 0 0 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 8 0 948.61204 P15170;H3BR35;Q8IYD1 P15170 214 221 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 2 0.0023065 127.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 2 5 1 1.2565 1.1526 12.276 19 Median 1.2926 1.2198 10.247 5 0 Median 1.1346 0.99465 8.1894 6 0 Median 1.3211 1.3327 8.7623 2 0 Median 1.3609 1.1561 7.5081 5 0 Median NaN NaN NaN 0 0 Median 1.4079 1.1756 NaN 1 0 Median 158280000 71632000 86646000 41007000 17805000 23202000 63962000 29636000 34325000 28446000 12948000 15498000 24303000 11040000 13263000 0 0 0 560400 202420 357980 13376 2016 13921 68038;68039;68040;68041;68042;68043;68044;68045;68046;68047;68048;68049;68050;68051;68052;68053;68054;68055;68056 68540;68541;68542;68543;68544;68545;68546;68547;68548;68549;68550;68551;68552;68553;68554;68555;68556;68557;68558;68559;68560 68560 21 HLKEGGLLTLAGAK QSIWTSTISSHLATKHLKEGGLLTLAGAKA KHLKEGGLLTLAGAKAALDGTPGMIGYGMA K H L A K A 2 0 0 0 0 0 1 3 1 0 4 2 0 0 0 0 1 0 0 0 0 0 14 1 1406.8245 P09417;B7Z415;D6RGG7;H0Y8F7 P09417 125 138 QDPR Dihydropteridine reductase yes no 3 0.012441 25.322 By MS/MS 1 0.76639 0.78051 NaN 1 Median 0.76639 0.78051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2248100 1079300 1168900 2248100 1079300 1168900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13377 1914 13922 68057 68561 68561 1 HLLASKPLGGLPETAK GEIEDLQQWLTDTERHLLASKPLGGLPETA LLASKPLGGLPETAKEQLNVHMEVCAAFEA R H L A K E 2 0 0 0 0 0 1 2 1 0 4 2 0 0 2 1 1 0 0 0 0 0 16 1 1630.9406 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4422 4437 DST Dystonin yes no 3 4.4607E-05 62.861 By matching By MS/MS By MS/MS 1 1 1 0.87738 0.92951 8.7486 3 Median 0.85624 0.92951 NaN 1 0 Median 0.87803 0.83769 NaN 1 0 Median 0.87738 0.99675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16666000 8836800 7829100 4088200 2333500 1754700 8655500 4368200 4287300 3922300 2135100 1787200 0 0 0 0 0 0 0 0 0 13378 934 13923 68058;68059;68060 68562;68563;68564 68564 3 HLLDDNGQDKPVKPPTK DKLGERDDTIPPEYRHLLDDNGQDKPVKPP LDDNGQDKPVKPPTKKSEDSKKPADDQDPI R H L T K K 0 0 1 3 0 1 0 1 1 0 2 3 0 0 3 0 1 0 0 1 0 0 17 2 1901.0007 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;H0YD33;E7EQA0;A0A0A0MR45;E7EQ12;A0A0C4DGD1 P20810 620 636 CAST Calpastatin yes no 4 0.060662 9.9585 By MS/MS 1 0.63092 0.64611 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63092 0.64611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 792570 427880 364690 0 0 0 0 0 0 0 0 0 792570 427880 364690 0 0 0 0 0 0 13379 239 13924 68061 68565 68565 1 HLLEAFK TQFPNFETACWYMGKHLLEAFKGSHKSGKQ TACWYMGKHLLEAFKGSHKSGKQLPPHLVQ K H L F K G 1 0 0 0 0 0 1 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 856.48069 O75151 O75151 376 382 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.034356 47.849 By MS/MS 1 1.5986 1.3221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5986 1.3221 NaN 1 0 Median 1398000 599720 798320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1398000 599720 798320 13380 1649 13925 68062 68566 68566 1 HLLEGQNASVLAYGPTGAGK TQQDIYAGSVQPILRHLLEGQNASVLAYGP QNASVLAYGPTGAGKTHTMLGSPEQPGVIP R H L G K T 3 0 1 0 0 1 1 4 1 0 3 1 0 0 1 1 1 0 1 1 0 0 20 0 1982.0221 Q14807;H3BRB3;H3BTH5 Q14807 114 133 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 3 2.4451E-19 115.34 By MS/MS 1 1.0111 1.0235 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0111 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11658000 5915200 5742800 0 0 0 0 0 0 11658000 5915200 5742800 0 0 0 0 0 0 0 0 0 13381 1228 13926 68063 68567 68567 1 HLLFQSHMATK ______________________________ EVARHLLFQSHMATKTTCMSSQGSDDEQIK R H L T K T 1 0 0 0 0 1 0 0 2 0 2 1 1 1 0 1 1 0 0 0 0 0 11 0 1311.6758 E7EW69;B5ME97;Q9P0V9;F5H1W3;F8WC85;C9JEQ7 E7EW69 9 19 SEPT10 Septin-10 yes no 3 3.5591E-05 118.9 By matching By MS/MS By MS/MS 1 2 2 0.9814 0.94767 11.959 5 Median 1.1774 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97107 0.96725 2.8918 2 0 Median 0.97565 0.85633 0.68744 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29723000 15027000 14696000 1833100 734760 1098300 0 0 0 15007000 7806100 7201100 12883000 6486500 6396600 0 0 0 0 0 0 13382 626 13927 68064;68065;68066;68067;68068 68568;68569;68570;68571 68569 4 HLLFSDVAAQQSLR VLETLASSLHTLKFRHLLFSDVAAQQSLRQ RHLLFSDVAAQQSLRQLLHQLIHHGAVSQV R H L L R Q 2 1 0 1 0 2 0 0 1 0 3 0 0 1 0 2 0 0 0 1 0 0 14 0 1583.842 A0A0B4J2G4;Q15345;A0A087X0S7;A0A087WTU1 A0A0B4J2G4 180 193 LRRC41 Leucine-rich repeat-containing protein 41 yes no 3 0.0018071 50.088 By MS/MS 1 0.90505 0.96297 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90505 0.96297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7329700 3693600 3636100 0 0 0 0 0 0 7329700 3693600 3636100 0 0 0 0 0 0 0 0 0 13383 226 13928 68069 68572 68572 1 HLLGAEHGDEPR SSDFRPSLPLPHFNKHLLGAEHGDEPRHGG FNKHLLGAEHGDEPRHGGLTLRLGLHQQGS K H L P R H 1 1 0 1 0 0 2 2 2 0 2 0 0 0 1 0 0 0 0 0 0 0 12 0 1329.6426 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0 U3KQC1 304 315 WDR18 WD repeat-containing protein 18 yes no 3 0.00041495 51.841 By matching By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 2 1.0633 0.96678 14.207 11 Median 0.79216 0.80825 NaN 1 0 Median 1.0417 1.0252 23.009 2 0 Median 0.85717 0.88629 1.9343 2 0 Median 1.1064 0.95384 1.9051 2 0 Median 1.0964 1.1271 21.559 2 0 Median 1.159 0.97933 1.7209 2 0 Median 14240000 7107000 7132600 756440 418230 338210 1854800 924000 930810 4794200 2473300 2320900 2640000 1219400 1420600 3417200 1718100 1699100 777000 353940 423060 13384 147 13929 68070;68071;68072;68073;68074;68075;68076;68077;68078;68079;68080 68573;68574;68575;68576;68577;68578;68579 68573 7 HLLGVEDLLQK MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV DYGKHLLGVEDLLQKHTLVEADIGIQAERV K H L Q K H 0 0 0 1 0 1 1 1 1 0 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1263.7187 Q01082;A0A087WUZ3;F8W6C1 Q01082 559 569 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00013837 114.28 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 4 3 3 3 2 1.0367 0.99633 27.678 17 Median 1.258 1.1996 7.4113 2 0 Median 1.2693 1.1281 41.694 4 0 Median 0.87053 0.95606 10.918 3 0 Median 0.93304 0.99633 10.548 3 0 Plateau 1.2978 1.3692 29.65 3 0 Median 0.97665 0.83267 6.6321 2 0 Median 119180000 56731000 62449000 18251000 7858700 10392000 33659000 14222000 19437000 56187000 29396000 26791000 2971400 1432600 1538800 7733900 3638900 4095000 379240 183360 195870 13385 2681 13930 68081;68082;68083;68084;68085;68086;68087;68088;68089;68090;68091;68092;68093;68094;68095;68096;68097 68580;68581;68582;68583;68584;68585;68586;68587;68588;68589;68590;68591 68590 12 HLLIAQELADR TLLQDYERAAEYHLRHLLIAQELADRVGEG YHLRHLLIAQELADRVGEGRACWSLGNAYV R H L D R V 2 1 0 1 0 1 1 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1277.7092 A0A0A0MSK4;A0A0A0MRC4;Q86YR5;A0A087WVF5 A0A0A0MSK4 315 325 GPSM1 G-protein-signaling modulator 1 yes no 2 0.0020024 78.934 By MS/MS 1 0.65284 0.62783 NaN 1 Median 0.65284 0.62783 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4313800 2508200 1805600 4313800 2508200 1805600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13386 157 13931 68098 68592 68592 1 HLLIGLPSGAILSLPK SAMEATITERGITSRHLLIGLPSGAILSLP LLIGLPSGAILSLPKALLDPRRPEIPTEQS R H L P K A 1 0 0 0 0 0 0 2 1 2 5 1 0 0 2 2 0 0 0 0 0 0 16 0 1628.0025 Q8N766;H7C4E3 Q8N766 860 875 EMC1 ER membrane protein complex subunit 1 yes no 2 1.9966E-06 87.298 By MS/MS By MS/MS 3 5 0.97674 0.87428 94.21 7 Median 0.9512 0.9053 6.6967 3 0 Median 0.98755 0.86614 123.71 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26567000 14580000 11987000 5206700 2597300 2609400 21361000 11983000 9377500 0 0 0 0 0 0 0 0 0 0 0 0 13387 3392 13932 68099;68100;68101;68102;68103;68104;68105;68106 68593;68594;68595;68596;68597 68594 5 HLLIGVSSDR LYEKADIKGPEDKKKHLLIGVSSDRGLCGA EDKKKHLLIGVSSDRGLCGAIHSSIAKQMK K H L D R G 0 1 0 1 0 0 0 1 1 1 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1095.6037 P36542 P36542 91 100 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 6.5039E-06 154.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 1 1 1.2313 1.1528 22.69 9 Median 1.2168 1.1778 26.13 2 0 Median 1.416 1.1771 31.763 3 1 Median 1.2313 1.2182 NaN 1 0 Median 1.3823 1.1528 NaN 1 1 Median 0.79101 0.78717 NaN 1 0 Median 1.2145 0.98574 NaN 1 0 Median 179710000 80314000 99400000 57730000 28067000 29663000 90836000 37313000 53522000 4338100 1582200 2755900 2433500 1092600 1340900 22470000 11402000 11067000 1907700 856840 1050800 13388 2257 13933 68107;68108;68109;68110;68111;68112;68113;68114;68115;68116 68598;68599;68600;68601;68602;68603;68604;68605;68606 68599 9 HLLIHTGVR PHCSYVAKYRRTLKRHLLIHTGVRSFSCDI RRTLKRHLLIHTGVRSFSCDICGKLFTRRE R H L V R S 0 1 0 0 0 0 0 1 2 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1044.6192 Q96DT7 Q96DT7 740 748 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 2 0.0074886 51.346 By MS/MS 1 1.1645 1.2506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1645 1.2506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 771590 323120 448480 0 0 0 0 0 0 771590 323120 448480 0 0 0 0 0 0 0 0 0 13389 3628 13934 68117 68607 68607 1 HLLNGDNMR TDIKPILRKLPRIKKHLLNGDNMRCSVNAT LPRIKKHLLNGDNMRCSVNATPQQMPQTEK K H L M R C 0 1 2 1 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1068.5135 Q5JRX3;A0A0A0MRX9;H0Y7L7 Q5JRX3 771 779 PITRM1 Presequence protease, mitochondrial yes no 2 0.0011047 85.212 By MS/MS By matching 1 1 1.4504 1.2233 24.262 2 Median NaN NaN NaN 0 0 Median 1.2104 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7381 1.4523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4957700 2352800 2604900 0 0 0 3446400 1599100 1847300 0 0 0 1511400 753790 757580 0 0 0 0 0 0 13390 3050 13935 68118;68119 68608 68608 1 HLLPVETQR WVYLEGIFTGSADIKHLLPVETQRFQSIST GSADIKHLLPVETQRFQSISTEFLALMKKV K H L Q R F 0 1 0 0 0 1 1 0 1 0 2 0 0 0 1 0 1 0 0 1 0 0 9 0 1091.6087 Q14204 Q14204 1559 1567 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 0.95022 0.83943 11.591 10 Median 0.85037 0.83943 0.71843 2 0 Median 1.0523 0.86661 8.4445 2 0 Median 0.90966 0.981 10.556 2 1 Median 0.98786 0.86413 5.4224 2 0 Median NaN NaN NaN 0 0 Median 0.90056 0.73957 13.611 2 0 Median 174810000 88121000 86692000 29119000 15515000 13605000 90468000 44567000 45902000 29683000 15573000 14110000 17652000 8529300 9122600 0 0 0 7890100 3936700 3953400 13391 2865 13936 68120;68121;68122;68123;68124;68125;68126;68127;68128;68129;68130 68609;68610;68611;68612;68613;68614;68615;68616;68617;68618;68619;68620;68621;68622;68623;68624;68625;68626;68627;68628;68629 68610 21 HLLQAPLDDAQEILQAR RKAGYQDMPEYENFKHLLQAPLDDAQEILQ LQAPLDDAQEILQARFPMPRYINTEHGGSQ K H L A R F 3 1 0 2 0 3 1 0 1 1 4 0 0 0 1 0 0 0 0 0 0 0 17 0 1930.0272 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 667 683 SEC23B Protein transport protein Sec23B yes no 3 9.8508E-05 44.601 By matching By MS/MS By matching 1 1 2 1.0232 0.94742 43.394 4 Median 0.99794 0.98811 NaN 1 0 Median 1.049 0.90842 NaN 1 0 Median 1.0578 1.1155 73.122 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8720000 3785100 4934900 1798400 886050 912330 4632100 2164600 2467400 2289600 734420 1555200 0 0 0 0 0 0 0 0 0 13392 401 13937 68131;68132;68133;68134 68630;68631 68630 2 HLLQAPVDDAQEILHSR RKSGYQDMPEYENFRHLLQAPVDDAQEILH LQAPVDDAQEILHSRFPMPRYIDTEHGGSQ R H L S R F 2 1 0 2 0 2 1 0 2 1 3 0 0 0 1 1 0 0 0 1 0 0 17 0 1941.0068 F5H365;Q15436 F5H365 654 670 SEC23A Protein transport protein Sec23A yes no 3 0.00090755 33.697 By MS/MS By matching 1 1 0.58365 0.582 10.47 2 Median 0.66243 0.62672 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51423 0.54046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17438000 11385000 6053100 12915000 8462100 4453400 0 0 0 4522600 2922900 1599700 0 0 0 0 0 0 0 0 0 13393 1029 13938 68135;68136 68632 68632 1 HLLQEAR GPGLPPGVPPLQERRHLLQEARSPDPGIVP VPPLQERRHLLQEARSPDPGIVPQEAPVGN R H L A R S 1 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 865.477 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 2015 2021 SEC16A Protein transport protein Sec16A yes no 2 0.044246 43 By MS/MS 1 1.1588 1.0229 NaN 1 Median NaN NaN NaN 0 0 Median 1.1588 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 902860 413050 489810 0 0 0 902860 413050 489810 0 0 0 0 0 0 0 0 0 0 0 0 13394 1513 13939 68137 68633 68633 1 HLLQGDFPR DITVAYPHNIPQSEKHLLQGDFPREIHFHV IPQSEKHLLQGDFPREIHFHVHRYPIDTLP K H L P R E 0 1 0 1 0 1 0 1 1 0 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1081.5669 Q6UWP7 Q6UWP7 271 279 LCLAT1 Lysocardiolipin acyltransferase 1 yes yes 2 0.001354 82.452 By MS/MS By matching 1 2 1.138 0.9385 11.26 3 Plateau 1.0263 1.0294 NaN 1 0 Median 1.0608 0.87872 9.3084 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18803000 9287100 9516300 4712100 2572100 2140100 14091000 6715000 7376200 0 0 0 0 0 0 0 0 0 0 0 0 13395 3187 13940 68138;68139;68140 68634 68634 1 HLLQGWLR GLNDRSDAVKQAMQKHLLQGWLRFSEGNIL VKQAMQKHLLQGWLRFSEGNILELLHRLDV K H L L R F 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 1021.5821 Q9BPX3 Q9BPX3 268 275 NCAPG Condensin complex subunit 3 yes yes 2 0.028483 60.961 By MS/MS 1 1.9091 1.6198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9091 1.6198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6620800 2215100 4405700 0 0 0 0 0 0 0 0 0 6620800 2215100 4405700 0 0 0 0 0 0 13396 3778 13941 68141 68635 68635 1 HLLQLKEEEEETNRQETEK KEEITQLTNNLQDMKHLLQLKEEEEETNRQ LKEEEEETNRQETEKLKEELSASSARTQNL K H L E K L 0 1 1 0 0 2 7 0 1 0 3 2 0 0 0 0 2 0 0 0 0 0 19 2 2382.1663 Q96Q89 Q96Q89 1241 1259 KIF20B Kinesin-like protein KIF20B yes yes 4 0.078936 6.1163 By MS/MS 1 1.0228 1.3513 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0228 1.3513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4445400 2456800 1988600 0 0 0 0 0 0 4445400 2456800 1988600 0 0 0 0 0 0 0 0 0 13397 3717 13942 68142 68636 68636 1 HLLQPPPRPAQPTSGK SLATVSAVLHTKDNKHLLQPPPRPAQPTSG LLQPPPRPAQPTSGKKRKRVSDDVPDCKVL K H L G K K 1 1 0 0 0 2 0 1 1 0 2 1 0 0 5 1 1 0 0 0 0 0 16 1 1722.9529 Q9NV88;H0YBK3 Q9NV88 551 566 INTS9 Integrator complex subunit 9 yes no 3 0.0621 10.854 By MS/MS 1 0.48179 0.44175 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48179 0.44175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 624160 408930 215230 0 0 0 0 0 0 0 0 0 624160 408930 215230 0 0 0 0 0 0 13398 4126 13943 68143 68637 68637 1 HLLSAGDGEVK QAHDGPVYSMVSTDRHLLSAGDGEVKAWLW STDRHLLSAGDGEVKAWLWAEMLKKGCKEL R H L V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1124.5826 Q86W42 Q86W42 88 98 THOC6 THO complex subunit 6 homolog yes yes 2 0.00010954 148.32 By matching By MS/MS By MS/MS 1 1 1 1.1186 0.94958 14.581 3 Median NaN NaN NaN 0 0 Median 1.3557 1.1489 NaN 1 0 Median 0.89623 0.86271 NaN 1 0 Median 1.1186 0.94958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19566000 10060000 9506100 0 0 0 1077800 535390 542380 13375000 7111700 6263200 5113300 2412800 2700500 0 0 0 0 0 0 13399 3290 13944 68144;68145;68146 68638;68639;68640;68641 68639 4 HLLSPVGR SFCRYHLTEPGLASRHLLSPVGRRQVAGHT EPGLASRHLLSPVGRRQVAGHTRGPRLSLR R H L G R R 0 1 0 0 0 0 0 1 1 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 877.51339 Q9NXE4;H7C1Q6;H7C0W5 Q9NXE4 789 796 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0044851 81.297 By matching By MS/MS By MS/MS By matching 1 2 1 3 1.1187 1.0269 18.775 7 Median NaN NaN NaN 0 0 Median 1.1784 1.0574 NaN 1 0 Median 0.88983 0.94665 32.907 2 0 Median 1.2814 1.1039 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2211 1.0267 17.483 3 0 Plateau 9357300 4811500 4545800 0 0 0 1035800 461410 574380 5357300 3079700 2277600 1334800 556980 777800 0 0 0 1629400 713350 916020 13400 4162 13945 68147;68148;68149;68150;68151;68152;68153 68642;68643;68644 68643 3 HLLSQPLFTESQK RRRQKQMKVLKKELRHLLSQPLFTESQKTK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS R H L Q K T 0 0 0 0 0 2 1 0 1 0 3 1 0 1 1 2 1 0 0 0 0 0 13 0 1526.8093 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 751 763 DDX24 ATP-dependent RNA helicase DDX24 yes no 2;3 0.00013563 143.5 By MS/MS By matching 2 1 0.88606 0.93328 25.611 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98283 1.0747 19.955 2 0 Median 0.88606 0.74219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19909000 10010000 9898600 0 0 0 0 0 0 19092000 9489300 9603000 816510 520920 295590 0 0 0 0 0 0 13401 1118 13946 68154;68155;68156 68645;68646 68646 2 HLLSYNR KKIDHELHRLQALLKHLLSYNRDSDQLTKW HRLQALLKHLLSYNRDSDQLTKWLESSQHT K H L N R D 0 1 1 0 0 0 0 0 1 0 2 0 0 0 0 1 0 0 1 0 0 0 7 0 901.477 Q8WXH0;G3V5X4;A0A0C4DGK3 Q8WXH0 4945 4951 SYNE2 Nesprin-2 yes no 2 0.037371 46.37 By MS/MS By matching 1 1 1.0677 1.056 24.552 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78733 0.88772 NaN 1 0 Median 1.4478 1.2562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1542400 716320 826100 0 0 0 0 0 0 1179300 548180 631110 363120 168130 194990 0 0 0 0 0 0 13402 3521 13947 68157;68158 68647;68648 68648 2 HLLTLADVK KSWPRTADNFDDILKHLLTLADVKHVFRLC FDDILKHLLTLADVKHVFRLCGTDEKILAN K H L V K H 1 0 0 1 0 0 0 0 1 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1008.5968 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1099 1107 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.00095989 88.37 By MS/MS By matching 1 1 1.1507 1.0723 35.004 2 Median 0.84333 0.8372 NaN 1 0 Median 1.5701 1.3735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9587800 4070000 5517700 3526400 1822500 1703900 6061400 2247600 3813800 0 0 0 0 0 0 0 0 0 0 0 0 13403 189 13948 68159;68160 68649 68649 1 HLLTLKDDAVKK NKLSVVDQKLSSEIRHLLTLKDDAVKKELI EIRHLLTLKDDAVKKELIPKAKSTKPKPKS R H L K K E 1 0 0 2 0 0 0 0 1 0 3 3 0 0 0 0 1 0 0 1 0 0 12 2 1379.8136 Q9NQZ2 Q9NQZ2 324 335 UTP3 Something about silencing protein 10 yes yes 3 0.00013292 79.659 By MS/MS By MS/MS 3 1 1.2076 1.3094 13.468 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1009 1.2273 14.849 3 0 Median 1.4262 1.3969 NaN 1 0 Median 10939000 4980100 5958400 0 0 0 0 0 0 0 0 0 0 0 0 9357900 4233300 5124600 1580700 746850 833830 13404 4071 13949 68161;68162;68163;68164 68650;68651;68652;68653;68654;68655 68652 6 HLLVNHFNAGVPLAAK EREVEIIVEELELKKHLLVNHFNAGVPLAA LLVNHFNAGVPLAAKSAAWHGILRRVNAVA K H L A K S 3 0 2 0 0 0 0 1 2 0 3 1 0 1 1 0 0 0 0 2 0 0 16 0 1699.9522 Q69YI7 Q69YI7 29 44 NAIF1 Nuclear apoptosis-inducing factor 1 yes yes 3 9.8464E-05 47.774 By MS/MS 1 0.54953 0.56934 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54953 0.56934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9173800 6718000 2455700 0 0 0 0 0 0 9173800 6718000 2455700 0 0 0 0 0 0 0 0 0 13405 3128 13950 68165 68656 68656 1 HLLVNPR LYSYLKEFIHILYFRHLLVNPRDRRVVIIE FIHILYFRHLLVNPRDRRVVIIESVLCPSH R H L P R D 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 847.50282 Q9NZ32;G3V2Q5;G3V5Y4;F6S9Y6;V9GYX7 Q9NZ32 79 85 ACTR10 Actin-related protein 10 yes no 2 0.023603 56.51 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1.0203 0.96077 10.012 7 Median 0.91499 0.91069 7.5701 2 0 Median 1.2432 1.0675 NaN 1 0 Median 0.94114 0.93645 14.844 2 0 Median 1.0902 0.93433 11.987 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5161700 2559400 2602300 852730 388080 464650 2222200 1058400 1163900 1118500 615550 502910 968280 497370 470910 0 0 0 0 0 0 13406 4183 13951 68166;68167;68168;68169;68170;68171;68172 68657;68658;68659;68660 68657 4 HLLVPER DLEWDQHLEQKKKQRHLLVPERETLFNTLA LEQKKKQRHLLVPERETLFNTLANNREIIN R H L E R E 0 1 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 862.50249 A0A494C1F2;P35658;A0A0A0MSW3 A0A494C1F2 836 842 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.014908 73.039 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 3 1.1148 0.98883 28.891 11 Median 0.39776 0.40744 NaN 1 0 Median 1.1118 0.95209 5.3546 2 0 Median 0.83538 0.91148 14.272 2 0 Median 1.2018 1.0406 3.5705 2 0 Median 0.81613 0.85343 NaN 1 0 Median 1.3642 1.1193 13.43 3 0 Median 29920000 15130000 14789000 549430 406540 142900 5454400 2541200 2913200 14574000 7518000 7055600 3305700 1643200 1662500 1801800 1076900 724940 4234500 1944400 2290100 13407 467 13952 68173;68174;68175;68176;68177;68178;68179;68180;68181;68182;68183 68661;68662;68663;68664;68665;68666;68667;68668;68669 68662 9 HLLVSNVGGDGEEIER GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE LLVSNVGGDGEEIERFFKLHQEDQACATCL R H L E R F 0 1 1 1 0 0 3 3 1 1 2 0 0 0 0 1 0 0 0 2 0 0 16 0 1722.8537 O75694;E9PF10 O75694 522 537 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 4.7784E-28 204.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 1 0.99848 0.94337 12.217 10 Median 0.97894 0.94337 1.2372 2 0 Median 1.134 0.95208 NaN 1 1 Median 0.81968 0.88715 18.227 4 0 Median 1.186 1.0051 11.984 2 0 Median NaN NaN NaN 0 0 Median 1.0994 0.89501 NaN 1 0 Median 230340000 109860000 120480000 21229000 11018000 10211000 7106900 3327800 3779100 171310000 82992000 88322000 28794000 11757000 17037000 0 0 0 1892100 762130 1129900 13408 1692 13953 68184;68185;68186;68187;68188;68189;68190;68191;68192;68193 68670;68671;68672;68673;68674;68675;68676;68677;68678;68679;68680;68681;68682;68683;68684 68677 14 HLMLPDFDLLEDIESK PLSGGDQYQNITVHRHLMLPDFDLLEDIES LMLPDFDLLEDIESKIQPGSQQADFLDALI R H L S K I 0 0 0 3 0 0 2 0 1 1 4 1 1 1 1 1 0 0 0 0 0 0 16 0 1913.9445 P13010;C9JZ81 P13010 82 97 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 1.9091E-06 91.937 By MS/MS 1 1.1058 0.96621 NaN 1 Median NaN NaN NaN 0 0 Median 1.1058 0.96621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8491300 3923400 4567900 0 0 0 8491300 3923400 4567900 0 0 0 0 0 0 0 0 0 0 0 0 13409 1986 13954 68194 68685;68686 68685 769 2 HLMQDLR RILIFSSRGINFRTRHLMQDLRMLMPHSKA RGINFRTRHLMQDLRMLMPHSKADTKMDRK R H L L R M 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 911.46472 Q8TDN6 Q8TDN6 76 82 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.0061442 94.262 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1.2391 1.1702 11.083 7 Median NaN NaN NaN 0 0 Median 1.282 1.1114 NaN 1 0 Median 1.2391 1.3438 NaN 1 0 Median 1.3212 1.1702 NaN 1 0 Median 1.1659 1.1794 12.924 3 0 Median 1.1828 1.0191 NaN 1 1 Median 27528000 12611000 14917000 0 0 0 4022200 1807700 2214600 3112500 1419300 1693200 887810 390450 497360 17150000 7927200 9222800 2355800 1066800 1289100 13410 3473 13955 68195;68196;68197;68198;68199;68200;68201 68687;68688;68689;68690;68691;68692;68693;68694;68695 68691 9 HLNDDVVK DAHTKEIDLVNRDPKHLNDDVVKIDFEDVI LVNRDPKHLNDDVVKIDFEDVIAEPEGTHS K H L V K I 0 0 1 2 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 938.48214 Q03135;E9PCT5;C9JKI3 Q03135 58 65 CAV1 Caveolin-1;Caveolin yes no 2 0.012155 55.531 By matching By MS/MS By matching 3 3 1 1.0111 0.94401 17.542 7 Median 1.0111 0.95374 20.163 3 0 Median 1.0196 0.94401 16.989 3 0 Median 0.87819 0.82281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225500 2048400 2177100 883990 415400 468590 2577600 1211200 1366500 763900 421830 342070 0 0 0 0 0 0 0 0 0 13411 2707 13956 68202;68203;68204;68205;68206;68207;68208 68696;68697 68697 2 HLNDLLEDR GNEIEVMVSTEEAKRHLNDLLEDRKILAQD TEEAKRHLNDLLEDRKILAQDVAQLKEKKE R H L D R K 0 1 1 2 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1123.5622 O95239;Q2VIQ3 O95239 763 771 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0064101 69.825 By MS/MS 1 0.96985 0.85081 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96985 0.85081 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1665500 965170 700370 0 0 0 0 0 0 0 0 0 1665500 965170 700370 0 0 0 0 0 0 13412 1757 13957 68209 68698 68698 1 HLNDLLEDRK GNEIEVMVSTEEAKRHLNDLLEDRKILAQD EEAKRHLNDLLEDRKILAQDVAQLKEKKES R H L R K I 0 1 1 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1251.6571 O95239;Q2VIQ3 O95239 763 772 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 0.00032877 66.056 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.1925 1.3513 34.904 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1925 1.3513 NaN 1 0 Median 1.5203 1.4644 4.3466 2 0 Median 0.63644 0.70693 NaN 1 0 Median 0.94123 0.82284 NaN 1 0 Median 16676000 6625700 10051000 0 0 0 0 0 0 8741000 3249000 5492000 5590300 2095100 3495100 1213400 791140 422230 1131600 490490 641150 13413 1757 13958 68210;68211;68212;68213;68214 68699;68700;68701;68702;68703;68704;68705;68706 68699 8 HLNLEYHSSMIADAVK ANPTAMLLSASNMLRHLNLEYHSSMIADAV LNLEYHSSMIADAVKKVIKVGKVRTRDMGG R H L V K K 2 0 1 1 0 0 1 0 2 1 2 1 1 0 0 2 0 0 1 1 0 0 16 0 1826.8985 A0A087WZN1;O43837;A0A087X2E5;A0A0D9SG66 A0A087WZN1 335 350 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 3 0.00019899 42.947 By MS/MS By matching By MS/MS 1 1 1 1.1048 1.0225 9.4204 3 Median 1.0262 0.94763 NaN 1 0 Median 1.1873 1.0225 NaN 1 0 Median 1.1048 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30107000 13364000 16743000 18729000 8386900 10342000 1789900 783670 1006200 9587700 4193100 5394600 0 0 0 0 0 0 0 0 0 13414 96 13959 68215;68216;68217 68707;68708;68709;68710 68709 4 HLNLEYHSSMIADAVKK ANPTAMLLSASNMLRHLNLEYHSSMIADAV NLEYHSSMIADAVKKVIKVGKVRTRDMGGY R H L K K V 2 0 1 1 0 0 1 0 2 1 2 2 1 0 0 2 0 0 1 1 0 0 17 1 1954.9935 A0A087WZN1;O43837;A0A087X2E5;A0A0D9SG66 A0A087WZN1 335 351 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 3;4 1.716E-06 83.106 By MS/MS 2 1.1867 1.0996 19.587 2 Median 1.1867 1.0996 19.587 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44589000 21411000 23178000 44589000 21411000 23178000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13415 96 13960 68218;68219 68711;68712;68713 68711 3 HLNLGMNR IEELPTQISSLQKLKHLNLGMNRLNTLPRG SSLQKLKHLNLGMNRLNTLPRGFGSLPALE K H L N R L 0 1 2 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 953.48652 Q15404 Q15404 90 97 RSU1 Ras suppressor protein 1 yes yes 2 0.0079829 82.263 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.1447 0.96959 12.399 5 Median 1.1963 1.1576 NaN 1 0 Median 1.1447 0.96959 NaN 1 0 Median 1.0727 1.0351 18.395 2 1 Median 1.1141 0.92934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14659000 6969500 7689300 2144900 973910 1171000 1186300 506470 679790 5312600 2540300 2772300 6015000 2948800 3066200 0 0 0 0 0 0 13416 2949 13961 68220;68221;68222;68223;68224;68225 68714;68715;68716;68717;68718;68719;68720;68721 68720 8 HLNPDTELKR APLSSRKHVLYVEHRHLNPDTELKRYFGAR YVEHRHLNPDTELKRYFGARAILGEQRPRQ R H L K R Y 0 1 1 1 0 0 1 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 10 1 1221.6466 Q9BQ70;Q9H7D3;H3BSP8;H3BQ53;H3BSS3 Q9BQ70 184 193 TCF25 Transcription factor 25 yes no 3 0.0011014 52.579 By MS/MS By MS/MS By matching By matching 1 1 2 1 1.0313 0.97823 21.938 5 Median 0.7356 0.74738 NaN 1 0 Median 0.97482 0.97823 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2051 1.1408 26.532 2 0 Median NaN NaN NaN 0 0 Median 1.137 1.0475 NaN 1 0 Median 2381600 1224100 1157500 844700 496060 348640 949860 455020 494840 0 0 0 220310 98407 121900 0 0 0 366760 174650 192120 13417 3786 13962 68226;68227;68228;68229;68230 68722;68723;68724 68723 3 HLNTEHALDDR PGCETLCEDLGQFIKHLNTEHALDDRSTAQ QFIKHLNTEHALDDRSTAQCRVQMQVVQQL K H L D R S 1 1 1 2 0 0 1 0 2 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1319.6218 B7ZBM3;Q8IVH2 B7ZBM3 327 337 FOXP4 Forkhead box protein P4 yes no 3 0.0013997 63.408 By MS/MS By MS/MS 2 2 1.0364 1.1041 14.827 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85969 0.97004 18.516 2 1 Median 1.2272 1.1481 5.7231 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4494400 2126600 2367800 0 0 0 0 0 0 3585100 1709700 1875400 909330 416930 492400 0 0 0 0 0 0 13418 640 13963 68231;68232;68233;68234 68725;68726 68725 2 HLNTINIR NLNNQIFIERTSNNKHLNTINIRHIANSIR ERTSNNKHLNTINIRHIANSIRTHGTGIMN K H L I R H 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 0 8 0 979.55631 A0A087X256;Q2M389 A0A087X256 815 822 KIAA1033 WASH complex subunit 7 yes no 2 0.0035088 91.906 By MS/MS By matching 1 1 1.2901 1.1003 10.61 2 Median NaN NaN NaN 0 0 Median 1.3878 1.186 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1993 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3429600 1270800 2158800 0 0 0 2935300 1070300 1865000 0 0 0 494230 200460 293770 0 0 0 0 0 0 13419 129 13964 68235;68236 68727 68727 1 HLNYTEFTQFLQELQLEHAR DCEFIRLHFGHNRKKHLNYTEFTQFLQELQ EFTQFLQELQLEHARQAFALKDKSKSGMIS K H L A R Q 1 1 1 0 0 3 3 0 2 0 4 0 0 2 0 0 2 0 1 0 0 0 20 0 2516.2448 O75746 O75746 144 163 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes yes 3 5.5631E-06 46.362 By matching By MS/MS 1 1 1.0216 0.94068 9.2489 2 Median 0.9004 0.88113 NaN 1 0 Median 1.1591 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2816800 1365100 1451700 459100 295420 163670 2357700 1069700 1288000 0 0 0 0 0 0 0 0 0 0 0 0 13420 1694 13965 68237;68238 68728;68729 68729 2 HLPDNECIEK EQKVNPREIAENITKHLPDNECIEKVEIAG ENITKHLPDNECIEKVEIAGPGFINVHLRK K H L E K V 0 0 1 1 1 0 2 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1253.571 P54136 P54136 144 153 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.011836 42.109 By MS/MS 1 0.8038 0.68822 NaN 1 Median NaN NaN NaN 0 0 Median 0.8038 0.68822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3731000 2157600 1573400 0 0 0 3731000 2157600 1573400 0 0 0 0 0 0 0 0 0 0 0 0 13421 2480 13966 68239 68730;68731 68731 2 HLPEPVAIK PEELIQKWNTKKTKKHLPEPVAIKFLASDL TKKTKKHLPEPVAIKFLASDLDQKMKSISL K H L I K F 1 0 0 0 0 0 1 0 1 1 1 1 0 0 2 0 0 0 0 1 0 0 9 0 1002.5862 O75691 O75691 2511 2519 UTP20 Small subunit processome component 20 homolog yes yes 2 0.029888 36.395 By matching By MS/MS By matching 1 2 1 0.95605 0.97958 43.162 4 Median 0.49922 0.46751 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0552 1.1665 3.4279 2 0 Median 0.88024 0.84277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9773800 5949900 3823800 3578800 2866200 712600 0 0 0 4548200 2292700 2255500 1646800 791050 855720 0 0 0 0 0 0 13422 1691 13967 68240;68241;68242;68243 68732;68733 68733 2 HLPLQFSR GWLICEEPTCRNRTRHLPLQFSRTGPLCPA TCRNRTRHLPLQFSRTGPLCPACMKATLQP R H L S R T 0 1 0 0 0 1 0 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 8 0 996.5505 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1358 1365 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.0028236 104.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.0073 0.8868 22.844 6 Median 0.88744 0.83277 NaN 1 0 Median 1.1488 1.1318 39.339 2 0 Median 0.83054 0.90519 NaN 1 0 Median 1.1328 0.98666 17.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54635000 25723000 28912000 22858000 11657000 11201000 12101000 5831900 6269400 13684000 6191100 7493300 5991300 2043400 3947900 0 0 0 0 0 0 13423 26 13968 68244;68245;68246;68247;68248;68249 68734;68735;68736;68737;68738;68739 68734 6 HLPNDPMFK KTDPRYTCQREFALKHLPNDPMFKLVAQLY REFALKHLPNDPMFKLVAQLYKIVPNVLLE K H L F K L 0 0 1 1 0 0 0 0 1 0 1 1 1 1 2 0 0 0 0 0 0 0 9 0 1097.5328 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 367 375 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.00073077 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 0.99129 0.84659 9.4467 10 Median 0.8281 0.78147 5.8271 3 0 Median 1.033 0.87308 7.7096 4 1 Median 0.82741 0.79467 NaN 1 0 Median 1.0638 0.95618 2.4673 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173620000 87745000 85880000 55031000 30959000 24072000 43536000 21351000 22185000 24922000 12685000 12237000 50136000 22750000 27386000 0 0 0 0 0 0 13424 594 13969;13970 68250;68251;68252;68253;68254;68255;68256;68257;68258;68259 68740;68741;68742;68743;68744;68745;68746;68747;68748;68749;68750;68751;68752;68753 68753 229 14 HLPNFFYK GGFQNIACLRSNAMKHLPNFFYKGQLTKMF LRSNAMKHLPNFFYKGQLTKMFFLFPDPHF K H L Y K G 0 0 1 0 0 0 0 0 1 0 1 1 0 2 1 0 0 0 1 0 0 0 8 0 1064.5444 Q9UBP6;H0YIH0 Q9UBP6 144 151 METTL1 tRNA (guanine-N(7)-)-methyltransferase yes no 2 0.033626 38.238 By MS/MS By matching 1 1 1.1912 1.0752 5.1604 2 Median 1.1566 1.1152 NaN 1 0 Median 1.2268 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5770500 2457500 3312900 4267600 1745400 2522200 1502900 712140 790760 0 0 0 0 0 0 0 0 0 0 0 0 13425 4242 13971 68260;68261 68754 68754 1 HLPSSDSMSLK AYSLVDPEKAKALSKHLPSSDSMSLKVDVE ALSKHLPSSDSMSLKVDVEALENSAGATYI K H L L K V 0 0 0 1 0 0 0 0 1 0 2 1 1 0 1 4 0 0 0 0 0 0 11 0 1200.5809 O76094 O76094 505 515 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.0024031 53.683 By MS/MS By matching 1 1 1.369 1.3201 26.658 2 Median NaN NaN NaN 0 0 Median 1.2491 1.0933 NaN 1 0 Median 1.5004 1.594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8506800 3644900 4861900 0 0 0 4114800 1897900 2216900 4391900 1747000 2645000 0 0 0 0 0 0 0 0 0 13426 1721 13972 68262;68263 68755 68755 1 HLPSTEPDPHVVR RVCFEMKINEEISVKHLPSTEPDPHVVRIG VKHLPSTEPDPHVVRIGWSLDSCSTQLGEE K H L V R I 0 1 0 1 0 0 1 0 2 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1482.7579 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0;M0QYI8;M0QYM5 Q9BUJ2 271 283 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2;3 0.00025422 72.496 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 3 2 0.50177 0.49858 24.973 12 Median 0.49305 0.47705 21.331 3 3 Median 0.47616 0.43585 25.257 2 1 Median 0.42583 0.45483 NaN 1 1 Median 0.7737 0.6667 NaN 1 0 Median 0.51065 0.53258 32.074 3 2 Median 0.58961 0.49217 39.407 2 0 Median 68637000 39931000 28707000 12449000 5983600 6465700 9546000 6258700 3287300 4748900 3174500 1574400 2480900 1343900 1137000 35157000 20697000 14460000 4255100 2473000 1782100 13427 3840 13973 68264;68265;68266;68267;68268;68269;68270;68271;68272;68273;68274;68275 68756;68757;68758;68759;68760;68761;68762;68763;68764;68765;68766;68767;68768;68769 68763 14 HLQAVDYASR FSYYGLTVWFPDMIRHLQAVDYASRTKVFP PDMIRHLQAVDYASRTKVFPGERVEHVTFN R H L S R T 2 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1158.5782 Q7L0J3 Q7L0J3 474 483 SV2A Synaptic vesicle glycoprotein 2A yes yes 2 0.0010092 88.948 By MS/MS 3 1.5786 1.3349 22.235 2 Median NaN NaN NaN 0 0 Median 1.5786 1.3349 22.235 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4454800 1593500 2861300 0 0 0 4454800 1593500 2861300 0 0 0 0 0 0 0 0 0 0 0 0 13428 3217 13974 68276;68277;68278 68770;68771;68772 68771 3 HLQDLMEGLTAK EDDLFDRLNTGILNKHLQDLMEGLTAKVFR LNKHLQDLMEGLTAKVFRTYNASITLQQQL K H L A K V 1 0 0 1 0 1 1 1 1 0 3 1 1 0 0 0 1 0 0 0 0 0 12 0 1354.6915 P11387 P11387 576 587 TOP1 DNA topoisomerase 1 yes yes 2;3 4.4059E-15 146.36 By matching By MS/MS By MS/MS By matching By matching 1 5 9 1 4 1.1283 1.0735 26.181 20 Median NaN NaN NaN 0 0 Median 1.1412 0.9761 NaN 1 0 Median 1.1055 1.197 14.546 5 2 Median 1.2371 1.0685 33.724 9 4 Median 1.0063 1.035 NaN 1 0 Median 1.1982 0.98813 27.285 4 0 Median 207810000 94757000 113050000 0 0 0 1186200 636310 549850 88789000 40935000 47855000 103450000 47130000 56323000 1594800 757790 836990 12782000 5298400 7483900 13429 1962 13975;13976 68279;68280;68281;68282;68283;68284;68285;68286;68287;68288;68289;68290;68291;68292;68293;68294;68295;68296;68297;68298 68773;68774;68775;68776;68777;68778;68779;68780;68781;68782;68783;68784;68785;68786;68787;68788;68789;68790 68782 736 18 HLQDLSGR LLEGRTKELGYTVKKHLQDLSGRISRARHN LGYTVKKHLQDLSGRISRARHNEL______ K H L G R I 0 1 0 1 0 1 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 924.47773 P30533 P30533 341 348 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes yes 2 0.0069954 68.915 By matching By MS/MS By matching 1 1 1 1.3893 1.3002 5.9579 3 Plateau 1.2808 1.3002 NaN 1 0 Median 1.3893 1.185 NaN 1 0 Median 1.3061 1.3243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2406000 1028700 1377300 301390 147160 154230 1672400 688860 983550 432210 192660 239550 0 0 0 0 0 0 0 0 0 13430 2196 13977 68299;68300;68301 68791;68792 68792 2 HLQELVGQETLPR CDPFAINTLALSTVRHLQELVGQETLPRDS VRHLQELVGQETLPRDSPDLLLLLRLLALG R H L P R D 0 1 0 0 0 2 2 1 1 0 3 0 0 0 1 0 1 0 0 1 0 0 13 0 1518.8154 Q8WX92 Q8WX92 321 333 NELFB Negative elongation factor B yes yes 3 1.5816E-05 86.803 By MS/MS By matching By MS/MS 1 1 1 1.4171 1.228 34.81 3 Median 1.47 1.4001 NaN 1 0 Median 1.4171 1.228 NaN 1 0 Median 0.713 0.7253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25566000 11559000 14007000 10581000 3406200 7175000 2444400 832820 1611600 12540000 7319800 5220400 0 0 0 0 0 0 0 0 0 13431 3514 13978 68302;68303;68304 68793;68794 68793 2 HLQEQLNELK MEIEKEKVEYMEKSKHLQEQLNELKTEIEA MEKSKHLQEQLNELKTEIEALKLKERETAL K H L L K T 0 0 1 0 0 2 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1250.6619 P35240 P35240 534 543 NF2 Merlin yes yes 2 0.00056965 115.71 By MS/MS By MS/MS 1 1 0.74026 0.70443 45.655 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4796 0.51007 NaN 1 0 Median 1.1426 0.97283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6226900 3818600 2408200 0 0 0 0 0 0 2941500 2205800 735700 3285300 1612800 1672500 0 0 0 0 0 0 13432 2234 13979 68305;68306 68795;68796;68797 68796 3 HLQEQLNELKTEIEALK MEIEKEKVEYMEKSKHLQEQLNELKTEIEA QEQLNELKTEIEALKLKERETALDILHNEN K H L L K L 1 0 1 0 0 2 4 0 1 1 4 2 0 0 0 0 1 0 0 0 0 0 17 1 2035.095 P35240 P35240 534 550 NF2 Merlin yes yes 3 0.063023 10.099 By MS/MS 1 1.0027 0.94114 NaN 1 Median NaN NaN NaN 0 0 Median 1.0027 0.94114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646000 750000 896030 0 0 0 1646000 750000 896030 0 0 0 0 0 0 0 0 0 0 0 0 13433 2234 13980 68307 68798 68798 1 HLQLAIR GNAARDNKKTRIIPRHLQLAIRNDEELNKL KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R H L I R N 1 1 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 849.51847 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;Q71UI9;P0C0S5;C9J0D1;A0A494C189;C9J386;P16104;Q96QV6 A0A0U1RR32 83 89 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFV;H2AFZ;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A.V;Histone H2A.Z;Histone H2AX;Histone H2A type 1-A no no 2 1.5023E-09 170.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 9 7 12 14 12 1.2961 1.1025 17.146 58 Median 0.9759 0.95114 24.458 5 0 Median 1.3555 1.1675 19.105 9 0 Median 0.95884 1.0318 6.2395 7 0 Plateau 1.414 1.1866 19.703 11 1 Median 0.96464 0.98577 19.385 14 1 Median 1.4178 1.1399 5.5352 12 2 Median 16679000000 7636400000 9043000000 52879000 21993000 30886000 220200000 85308000 134900000 232950000 114890000 118060000 72243000 29761000 42482000 10743000000 5248900000 5493800000 5358300000 2135500000 3222800000 13434 308;1856;2024;1925 13981 68308;68309;68310;68311;68312;68313;68314;68315;68316;68317;68318;68319;68320;68321;68322;68323;68324;68325;68326;68327;68328;68329;68330;68331;68332;68333;68334;68335;68336;68337;68338;68339;68340;68341;68342;68343;68344;68345;68346;68347;68348;68349;68350;68351;68352;68353;68354;68355;68356;68357;68358;68359;68360;68361;68362;68363;68364;68365;68366 68799;68800;68801;68802;68803;68804;68805;68806;68807;68808;68809;68810;68811;68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822;68823;68824;68825;68826;68827;68828;68829;68830;68831;68832;68833;68834;68835;68836;68837;68838;68839;68840;68841;68842;68843;68844;68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856;68857;68858;68859;68860;68861;68862;68863;68864;68865;68866;68867;68868;68869;68870;68871;68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883;68884;68885;68886;68887;68888;68889;68890;68891;68892;68893;68894;68895;68896;68897;68898;68899;68900;68901;68902;68903;68904;68905;68906;68907;68908;68909;68910;68911;68912;68913;68914;68915;68916;68917;68918;68919;68920;68921;68922;68923;68924;68925;68926;68927;68928;68929;68930;68931;68932;68933;68934;68935;68936;68937;68938;68939;68940;68941;68942 68939 144 HLQLAIRGDEELDSLIK GNASKDLKVKRITPRHLQLAIRGDEELDSL QLAIRGDEELDSLIKATIAGGGVIPHIHKS R H L I K A 1 1 0 2 0 1 2 1 1 2 4 1 0 0 0 1 0 0 0 0 0 0 17 1 1949.0582 Q71UI9;P0C0S5;C9J0D1;A0A494C189;C9J386 Q71UI9 86 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z;Histone H2A yes no 2;3;4 7.1954E-40 209.21 By MS/MS By MS/MS 10 13 1.1186 1.1287 17.823 23 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98 1.1232 15.076 10 0 Median 1.4069 1.1332 20.285 13 0 Median 2234400000 1066700000 1167700000 0 0 0 0 0 0 0 0 0 0 0 0 2132800000 1026300000 1106500000 101540000 40323000 61222000 13435 1925 13982 68367;68368;68369;68370;68371;68372;68373;68374;68375;68376;68377;68378;68379;68380;68381;68382;68383;68384;68385;68386;68387;68388;68389 68943;68944;68945;68946;68947;68948;68949;68950;68951;68952;68953;68954;68955;68956;68957;68958;68959;68960;68961;68962;68963;68964;68965 68951 23 HLQLAIRNDEELNK GNAARDNKKTRIIPRHLQLAIRNDEELNKL RHLQLAIRNDEELNKLLGKVTIAQGGVLPN R H L N K L 1 1 2 1 0 1 2 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1691.8955 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6 A0A0U1RR32 83 96 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A no no 2;3;4 2.7524E-42 222.72 By MS/MS By MS/MS By MS/MS 1 34 12 0.89159 0.96202 14.088 37 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92447 0.95249 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85414 0.95281 13.069 25 4 Median 1.3213 1.0821 16.189 11 0 Median 3644600000 1782900000 1861700000 0 0 0 0 0 0 56354000 27348000 29005000 0 0 0 2701400000 1383900000 1317500000 886840000 371610000 515230000 13436 308;1856;2024 13983 68390;68391;68392;68393;68394;68395;68396;68397;68398;68399;68400;68401;68402;68403;68404;68405;68406;68407;68408;68409;68410;68411;68412;68413;68414;68415;68416;68417;68418;68419;68420;68421;68422;68423;68424;68425;68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436 68966;68967;68968;68969;68970;68971;68972;68973;68974;68975;68976;68977;68978;68979;68980;68981;68982;68983;68984;68985;68986;68987;68988;68989;68990;68991;68992;68993;68994;68995;68996;68997;68998;68999;69000;69001;69002;69003;69004;69005;69006;69007;69008;69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019;69020;69021;69022;69023;69024;69025;69026;69027;69028;69029;69030;69031;69032;69033;69034;69035;69036;69037;69038;69039;69040;69041;69042;69043;69044;69045;69046;69047;69048;69049;69050;69051;69052;69053;69054;69055;69056;69057;69058;69059;69060 69004 95 HLQLAIRNDEELNKLLGK GNAARDNKKTRIIPRHLQLAIRNDEELNKL LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R H L G K V 1 1 2 1 0 1 2 1 1 1 5 2 0 0 0 0 0 0 0 0 0 0 18 2 2103.18 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9 A0A0U1RR32 83 100 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A yes no 2;3;4;5 6.5481E-13 132.51 By matching By MS/MS By MS/MS 1 8 1 0.90914 1.0473 22.659 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51802 0.58462 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90914 1.0473 11.916 8 0 Median 1.6891 1.2836 NaN 1 0 Median 13260000000 6697100000 6562900000 0 0 0 0 0 0 2871700 1269900 1601800 0 0 0 13180000000 6666000000 6514100000 77076000 29875000 47201000 13437 308 13984 68437;68438;68439;68440;68441;68442;68443;68444;68445;68446 69061;69062;69063;69064;69065;69066;69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083 69075 23 HLQLAIRNDEELNKLLGR GNAARDNKKTRIIPRHLQLAIRNDEELNKL LAIRNDEELNKLLGRVTIAQGGVLPNIQAV R H L G R V 1 2 2 1 0 1 2 1 1 1 5 1 0 0 0 0 0 0 0 0 0 0 18 2 2131.1862 Q93077;Q7L7L0;P04908 Q93077 83 100 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 2;3;4;5 0 394.17 By MS/MS By matching 4 2 0.93457 1.0289 12.255 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90628 1.0868 6.6431 4 0 Median 1.0089 0.90108 13.18 2 0 Median 1366700000 709790000 656870000 0 0 0 0 0 0 0 0 0 0 0 0 1349800000 701160000 648590000 16914000 8636000 8277700 13438 1856 13985 68447;68448;68449;68450;68451;68452 69084;69085;69086;69087;69088;69089;69090;69091;69092;69093;69094;69095;69096;69097;69098;69099;69100 69099 17 HLQLAVR GNAARDNKKTRIIPRHLQLAVRNDEELNKL KKTRIIPRHLQLAVRNDEELNKLLGGVTIA R H L V R N 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 835.50282 Q8IUE6 Q8IUE6 83 89 HIST2H2AB Histone H2A type 2-B yes yes 2 3.3808E-06 159.75 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 7 5 1.2823 1.1844 18.35 18 Median 1.3698 1.3527 NaN 1 0 Median 1.7079 1.438 2.6295 2 0 Median 1.1837 1.1582 2.7728 2 0 Median 2.1457 1.7044 NaN 1 0 Median 1.0046 1.0565 4.6286 7 0 Median 1.6739 1.3104 19.655 5 0 Median 288410000 134630000 153780000 915830 366190 549630 3616300 1368300 2248100 4882600 2026800 2855800 467370 136050 331320 233290000 113920000 119370000 45238000 16815000 28424000 13439 3312 13986 68453;68454;68455;68456;68457;68458;68459;68460;68461;68462;68463;68464;68465;68466;68467;68468;68469;68470 69101;69102;69103;69104;69105;69106;69107;69108;69109;69110;69111;69112;69113;69114;69115;69116;69117 69107 17 HLQLNETSTANHIHSR VALIPGTLIKKFSQKHLQLNETSTANHIHS LQLNETSTANHIHSRKDT____________ K H L S R K 1 1 2 0 0 1 1 0 3 1 2 0 0 0 0 2 2 0 0 0 0 0 16 0 1856.9242 Q96HV5 Q96HV5 246 261 TMEM41A Transmembrane protein 41A yes yes 4 2.3095E-06 85.493 By MS/MS By MS/MS 2 2 1.2532 1.1086 9.1644 4 Median 1.1395 1.1118 15.567 2 0 Median 1.3058 1.1086 3.0874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9810500 3903700 5906800 4052000 1616300 2435800 5758500 2287400 3471000 0 0 0 0 0 0 0 0 0 0 0 0 13440 3670 13987 68471;68472;68473;68474 69118;69119;69120;69121;69122 69120 5 HLQLQTQLEQLQEETFR QSDSIEDPNSPAGRRHLQLQTQLEQLQEET QLQTQLEQLQEETFRLEAAKDDYRIRCEEL R H L F R L 0 1 0 0 0 5 3 0 1 0 4 0 0 1 0 0 2 0 0 0 0 0 17 0 2140.0913 Q86VS8 Q86VS8 244 260 HOOK3 Protein Hook homolog 3 yes yes 3 2.3562E-08 96.666 By MS/MS 1 1.1408 0.99123 NaN 1 Median NaN NaN NaN 0 0 Median 1.1408 0.99123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2123400 857930 1265400 0 0 0 2123400 857930 1265400 0 0 0 0 0 0 0 0 0 0 0 0 13441 3289 13988 68475 69123 69123 1 HLQLSFQEPHFYLR SVDLSMGLSSFISRRHLQLSFQEPHFYLRC RHLQLSFQEPHFYLRCLGKNGVFVDGAFQR R H L L R C 0 1 0 0 0 2 1 0 2 0 3 0 0 2 1 1 0 0 1 0 0 0 14 0 1813.9264 P85037 P85037 148 161 FOXK1 Forkhead box protein K1 yes yes 3 0.00061348 43.991 By matching By matching By MS/MS By matching 1 1 1 1 1.0672 1.001 14.618 4 Median 1.0662 1.0087 NaN 1 0 Median 0.92869 0.80474 NaN 1 0 Median 1.0682 1.1452 NaN 1 0 Median 1.1982 0.99342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20532000 9687400 10845000 13123000 6142700 6980400 3541900 1716400 1825600 3703900 1730900 1973000 162970 97403 65572 0 0 0 0 0 0 13442 2669 13989 68476;68477;68478;68479 69124;69125 69125 2 HLQTGENHTSVDPR RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ KHLQTGENHTSVDPRQTQFGGLNTPYPGGL K H L P R Q 0 1 1 1 0 1 1 1 2 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1589.7546 O94906 O94906 190 203 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.0034769 32.275 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0088 0.95211 5.7771 5 Median 1.0088 1.0187 NaN 1 0 Median 1.1233 0.95211 NaN 1 0 Median 0.81075 0.86728 NaN 1 0 Median 1.1138 0.95102 NaN 1 0 Median 0.90878 0.96245 NaN 1 0 Median NaN NaN NaN 0 0 Median 7996400 3801400 4195000 580240 286710 293530 4075700 1806200 2269400 1831100 969370 861770 904780 447760 457030 604620 291350 313270 0 0 0 13443 1735 13990 68480;68481;68482;68483;68484 69126;69127;69128;69129;69130 69129 5 HLQTHSNTIVVSLQSK QLQDFVRAKGSQSGRHLQTHSNTIVVSLQS LQTHSNTIVVSLQSKLASMSNDFKSVLEVR R H L S K L 0 0 1 0 0 2 0 0 2 1 2 1 0 0 0 3 2 0 0 2 0 0 16 0 1790.9639 Q13190;E9PNU4;H7C3X5 Q13190 167 182 STX5 Syntaxin-5 yes no 3 1.8195E-10 118.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 1.3205 1.2188 37.997 13 Median 1.0294 0.93618 16.578 3 0 Median 1.2515 1.0697 11.451 3 0 Median 2.1054 2.1204 70.548 2 1 Median 1.8135 1.5396 36.582 3 0 Median NaN NaN NaN 0 0 Median 1.5958 1.3381 7.9142 2 0 Median 48229000 20141000 28088000 25667000 11454000 14214000 9031300 3995300 5036000 7451500 2504600 4946800 4041900 1368900 2673000 0 0 0 2037200 818520 1218700 13444 975 13991 68485;68486;68487;68488;68489;68490;68491;68492;68493;68494;68495;68496;68497 69131;69132;69133;69134;69135;69136;69137;69138;69139;69140;69141 69136 11 HLQTYGEHYPLDHFDK EMPAQLRKQQESLARHLQTYGEHYPLDHFD LQTYGEHYPLDHFDK_______________ R H L D K - 0 0 0 2 0 1 1 1 3 0 2 1 0 1 1 0 1 0 2 0 0 0 16 0 1998.9224 F5H5P2;P12694 F5H5P2 464 479 BCKDHA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 4 3.0678E-07 91.932 By matching By MS/MS By MS/MS 1 1 1 1.1832 1.0658 23.515 3 Median NaN NaN NaN 0 0 Median 1.4806 1.2605 NaN 1 0 Median 0.81476 0.79225 NaN 1 0 Median 1.1832 1.0658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31131000 14393000 16738000 0 0 0 1035200 435160 600050 8529100 4630700 3898400 21566000 9326800 12240000 0 0 0 0 0 0 13445 1037 13992 68498;68499;68500 69142;69143;69144;69145 69145 4 HLQVIFGHLAASR SKTEDRKEYNIGVLRHLQVIFGHLAASRLQ LRHLQVIFGHLAASRLQYYVPRGFWKQFRL R H L S R L 2 1 0 0 0 1 0 1 2 1 2 0 0 1 0 1 0 0 0 1 0 0 13 0 1447.8048 Q93008 Q93008 1646 1658 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 1.1853E-07 108.59 By MS/MS By MS/MS By matching 1 3 1 1.434 1.1474 6.2656 5 Median 1.1832 1.1105 NaN 1 0 Median 1.4649 1.2299 4.3223 3 0 Median 0.97352 1.0765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50350000 22518000 27831000 15193000 7274600 7918000 31140000 13226000 17914000 4017300 2017800 1999500 0 0 0 0 0 0 0 0 0 13446 3573 13993 68501;68502;68503;68504;68505 69146;69147;69148;69149;69150 69146 5 HLREYQDLLNVK RLQDEIQNMKEEMARHLREYQDLLNVKMAL MARHLREYQDLLNVKMALDIEIATYRKLLE R H L V K M 0 1 1 1 0 1 1 0 1 0 3 1 0 0 0 0 0 0 1 1 0 0 12 1 1526.8205 P08670;B0YJC4;B0YJC5;P17661;Q16352;E7EMV2;E7ESP9;P07197 P08670 379 390 VIM;DES;INA;NEFM Vimentin;Desmin;Alpha-internexin;Neurofilament medium polypeptide no no 2;3 0.00012794 100.48 By matching By matching By MS/MS By MS/MS 1 1 3 1 1.1967 1.1083 60.586 6 Median 1.1325 1.1322 NaN 1 0 Median 1.2289 1.085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2118 1.3622 95.205 3 1 Median 1.1818 1.0558 NaN 1 0 Median 59384000 23747000 35637000 3643300 1716600 1926700 2433800 1007200 1426700 0 0 0 0 0 0 35182000 11932000 23250000 18126000 9091800 9033700 13447 1907;859 13994 68506;68507;68508;68509;68510;68511 69151;69152;69153 69151 3 HLSDHLSELVEQTLSDLEQSK TQNPNYYNLQGISHRHLSDHLSELVEQTLS SELVEQTLSDLEQSKCISIEDEMDVAPLNL R H L S K C 0 0 0 2 0 2 3 0 2 0 5 1 0 0 0 4 1 0 0 1 0 0 21 0 2407.1867 O75643 O75643 1780 1800 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 4.284E-23 114.4 By MS/MS 1 1.1573 1.0279 NaN 1 Median NaN NaN NaN 0 0 Median 1.1573 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3235800 1438800 1796900 0 0 0 3235800 1438800 1796900 0 0 0 0 0 0 0 0 0 0 0 0 13448 1688 13995 68512 69154 69154 1 HLSELLK QSPHSNLFGVQVQYKHLSELLKRTALHGES FGVQVQYKHLSELLKRTALHGESNSVLIIG K H L L K R 0 0 0 0 0 0 1 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 838.49125 O43929;C9JGH7;C9J2X8;Q53SE3;Q5THS9;Q96NJ5 O43929 46 52 ORC4;ORC4L;KLHL32 Origin recognition complex subunit 4;Kelch-like protein 32 yes no 2 0.015285 71.949 By MS/MS 1 1.1078 1.1002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1078 1.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2869000 1383200 1485800 0 0 0 0 0 0 2869000 1383200 1485800 0 0 0 0 0 0 0 0 0 13449 1602 13996 68513 69155 69155 1 HLSEPIAVDPK GLLAGLQACEATASKHLSEPIAVDPKNLQR TASKHLSEPIAVDPKNLQRQLEETKALQGQ K H L P K N 1 0 0 1 0 0 1 0 1 1 1 1 0 0 2 1 0 0 0 1 0 0 11 0 1204.6452 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;H0YC82 E9PHM6 1984 1994 DST Dystonin yes no 2 0.00012208 116.52 By MS/MS By MS/MS By matching 1 1 1 0.6294 0.62472 11.206 3 Median 0.6294 0.62472 NaN 1 0 Median 0.81312 0.71076 NaN 1 1 Median 0.52009 0.56858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11094000 5992600 5101200 3168800 1845200 1323600 5753600 2760800 2992800 2171400 1386600 784850 0 0 0 0 0 0 0 0 0 13450 934 13997 68514;68515;68516 69156;69157 69157 2 HLSFVVR EERTILPMSRAFRGKHLSFVVRFPNQGRQV MSRAFRGKHLSFVVRFPNQGRQVDDLEVWS K H L V R F 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 7 0 856.49192 Q93008 Q93008 885 891 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.0030891 105.22 By MS/MS By MS/MS By MS/MS 1 2 1 1.1621 1.0858 7.6458 4 Median 1.0419 0.97796 NaN 1 0 Median 1.3142 1.0858 0.44574 2 0 Median 1.0602 1.1785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75828000 32348000 43479000 10998000 5442700 5555100 62064000 25490000 36574000 2765500 1415100 1350400 0 0 0 0 0 0 0 0 0 13451 3573 13998 68517;68518;68519;68520 69158;69159;69160;69161;69162;69163 69159 6 HLSGEFGKPYFIK AARNVPVGFGESWKKHLSGEFGKPYFIKLM KKHLSGEFGKPYFIKLMGFVAEERKHYTVY K H L I K L 0 0 0 0 0 0 1 2 1 1 1 2 0 2 1 1 0 0 1 0 0 0 13 1 1521.798 P13051;Q68DM5;F5GYA2 P13051 101 113 UNG;DKFZp781L1143 Uracil-DNA glycosylase yes no 3 0.00033307 60.301 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.89096 0.85328 14.765 6 Median 0.9251 0.90357 NaN 1 0 Median 0.89395 0.80579 NaN 1 0 Median 0.77132 0.82273 16.893 2 0 Median 0.99757 0.8821 26.276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31590000 15514000 16075000 4211200 2095000 2116200 1137400 439480 697880 13990000 7098800 6891200 12251000 5880700 6370100 0 0 0 0 0 0 13452 1987 13999 68521;68522;68523;68524;68525;68526 69164;69165;69166;69167;69168;69169 69164 6 HLSIAQEQGDKVGEAR KVLGRFDEAAVCCQRHLSIAQEQGDKVGEA LSIAQEQGDKVGEARALYNIGNVYHAKGKQ R H L A R A 2 1 0 1 0 2 2 2 1 1 1 1 0 0 0 1 0 0 0 1 0 0 16 1 1736.8806 A0A0A0MSK4;A0A0A0MRC4;Q86YR5;A0A087WVF5 A0A0A0MSK4 132 147 GPSM1 G-protein-signaling modulator 1 yes no 3 0.00020158 44.294 By MS/MS 1 0.88193 0.90002 NaN 1 Median 0.88193 0.90002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1740400 821070 919330 1740400 821070 919330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13453 157 14000 68527 69170;69171 69171 2 HLSIILEK DRDRIVGDYQQLEERHLSIILEKDQLIQEA YQQLEERHLSIILEKDQLIQEAAAENNKLK R H L E K D 0 0 0 0 0 0 1 0 1 2 2 1 0 0 0 1 0 0 0 0 0 0 8 0 951.57532 Q14789 Q14789 2487 2494 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.0024268 119.29 By MS/MS By matching 2 1 1.0514 0.85589 23.045 3 Median NaN NaN NaN 0 0 Median 0.96056 0.84334 32.568 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0514 0.85589 NaN 1 0 Median 11340000 4584700 6754900 0 0 0 11099000 4471600 6627400 0 0 0 0 0 0 0 0 0 240520 113040 127480 13454 2900 14001 68528;68529;68530 69172 69172 1 HLSPYATLTVGDSSHK YMERAEDLPLRKGTKHLSPYATLTVGDSSH LSPYATLTVGDSSHKTKTISQTSAPVWDES K H L H K T 1 0 0 1 0 0 0 1 2 0 2 1 0 0 1 3 2 0 1 1 0 0 16 0 1711.8529 Q9BSJ8 Q9BSJ8 818 833 ESYT1 Extended synaptotagmin-1 yes yes 2;3 2.9118E-26 123.84 By MS/MS By MS/MS 2 1 0.99105 0.89046 1.8033 2 Median 0.93884 0.90189 NaN 1 0 Median 1.0462 0.87918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70596000 35442000 35154000 34545000 16756000 17789000 36051000 18686000 17365000 0 0 0 0 0 0 0 0 0 0 0 0 13455 3816 14002 68531;68532;68533 69173;69174;69175;69176;69177;69178 69176 6 HLSSGDLLR KGTVSSRITTHFELKHLSSGDLLRDNMLRG THFELKHLSSGDLLRDNMLRGTEIGVLAKA K H L L R D 0 1 0 1 0 0 0 1 1 0 3 0 0 0 0 2 0 0 0 0 0 0 9 0 996.53524 Q9UIJ7 Q9UIJ7 35 43 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.0050174 58.917 By MS/MS By matching 1 1 1.0051 0.90088 8.5718 2 Median 0.89253 0.8479 NaN 1 0 Median 1.1319 0.95717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29569000 14338000 15231000 23161000 11527000 11634000 6407800 2810700 3597100 0 0 0 0 0 0 0 0 0 0 0 0 13456 4291 14003 68534;68535 69179 69179 1 HLSSLTDNEQADIFER IEGLYPPRAKLVIQRHLSSLTDNEQADIFE LSSLTDNEQADIFERVQKMKPVSDQEENEL R H L E R V 1 1 1 2 0 1 2 0 1 1 2 0 0 1 0 2 1 0 0 0 0 0 16 0 1873.8806 O60343;A0A3B3IRT3 O60343 483 498 TBC1D4 TBC1 domain family member 4 yes no 3 0.00016025 44.807 By MS/MS By matching 1 1 1.4774 1.3549 57.978 2 Median 0.93278 0.89918 NaN 1 0 Median 2.3401 2.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5179500 2103400 3076100 4201200 1809000 2392200 978330 294410 683920 0 0 0 0 0 0 0 0 0 0 0 0 13457 416 14004 68536;68537 69180 69180 1 HLSVNDLPVGR ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE GVIKHLSVNDLPVGRSVEETLRLVKAFQYV K H L G R S 0 1 1 1 0 0 0 1 1 0 2 0 0 0 1 1 0 0 0 2 0 0 11 0 1205.6517 P30048 P30048 197 207 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2;3 3.5504E-05 145.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 1 1 1 1 1.0684 0.96355 37.131 14 Median 0.83003 0.79793 23.596 6 1 Median 1.2279 1.0441 18.127 5 0 Median 0.95525 0.91776 NaN 1 0 Median 1.2929 1.0714 NaN 1 0 Median 3.0701 3.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 920520000 468330000 452200000 675950000 358630000 317320000 226120000 101690000 124440000 12572000 5957600 6614500 2905800 1331200 1574600 2974400 727550 2246900 0 0 0 13458 2183 14005 68538;68539;68540;68541;68542;68543;68544;68545;68546;68547;68548;68549;68550;68551;68552 69181;69182;69183;69184;69185;69186;69187;69188;69189;69190;69191;69192;69193;69194;69195;69196;69197;69198;69199;69200;69201;69202;69203;69204;69205;69206;69207;69208;69209;69210 69190 30 HLSVVTLAAK RNLPPLTEAQKNKLRHLSVVTLAAKVKCIP KNKLRHLSVVTLAAKVKCIPYAVLLEALAL R H L A K V 2 0 0 0 0 0 0 0 1 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1037.6233 Q9UBW8;F5H7C6;F5GYF7;F5H248;F5H4U8 Q9UBW8 98 107 COPS7A COP9 signalosome complex subunit 7a yes no 2 6.507E-05 125.82 By MS/MS By MS/MS 2 1 1.2088 1.0825 5.7263 2 Median NaN NaN NaN 0 0 Median 1.3376 1.1273 NaN 1 1 Median 1.0924 1.0396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7144800 3101900 4042900 0 0 0 3639200 1487600 2151600 3505700 1614400 1891300 0 0 0 0 0 0 0 0 0 13459 4253 14006 68553;68554;68555 69211;69212;69213 69213 3 HLTDAYFK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP SNVKIPKHLTDAYFKKKKLRKPRHQEGEIF K H L F K K 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 Q02878 Q02878 211 218 RPL6 60S ribosomal protein L6 yes yes 2 0.00073119 151.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 3 2 1.217 1.0559 10.96 12 Median 1.2652 1.2132 24.911 2 0 Median 1.2178 1.0367 6.4897 3 0 Median 1.1196 1.0783 NaN 1 1 Median 1.2537 1.1395 8.1636 2 0 Median 1.0964 1.072 10.137 2 0 Median 1.2319 1.0031 0.57673 2 0 Median 238580000 107860000 130730000 62613000 28467000 34146000 81526000 37601000 43924000 18545000 8814600 9730200 10277000 4301700 5974800 41544000 19236000 22308000 24077000 9435100 14642000 13460 2703 14007 68556;68557;68558;68559;68560;68561;68562;68563;68564;68565;68566;68567;68568;68569 69214;69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229;69230;69231;69232;69233;69234;69235;69236 69227 23 HLTDPSYGIPR PGSRWRNLPSGPSLKHLTDPSYGIPREQQK PSLKHLTDPSYGIPREQQKAALQELTRAHV K H L P R E 0 1 0 1 0 0 0 1 1 1 1 0 0 0 2 1 1 0 1 0 0 0 11 0 1254.6357 Q9H9Y6;F8WDS4;F8WAK7;F8WBB9;F8WCS3;C9JJG2;C9JS83 Q9H9Y6 18 28 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes no 2 0.036407 46.891 By MS/MS 1 0.46139 0.50737 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46139 0.50737 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9746500 6477700 3268700 0 0 0 0 0 0 9746500 6477700 3268700 0 0 0 0 0 0 0 0 0 13461 4004 14008 68570 69237 69237 1 HLTEYFTFK YPKTLFLLRGNHECRHLTEYFTFKQECKIK GNHECRHLTEYFTFKQECKIKYSERVYDAC R H L F K Q 0 0 0 0 0 0 1 0 1 0 1 1 0 2 0 0 2 0 1 0 0 0 9 0 1184.5866 Q08209;E9PPC8;E9PK68;E7ETC2 Q08209 155 163 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase no no 2 0.0040114 61.999 By MS/MS By matching 1 1 2.0071 2.0817 92.734 2 Median 1.1431 1.0805 NaN 1 0 Median 3.5241 4.0104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8395500 2957700 5437800 4754400 2263800 2490600 3641100 693890 2947200 0 0 0 0 0 0 0 0 0 0 0 0 13462 2735 14009 68571;68572 69238 69238 1 HLTGEFEK LVGDGGTGKTTFVKRHLTGEFEKKYVATLG KTTFVKRHLTGEFEKKYVATLGVEVHPLVF R H L E K K 0 0 0 0 0 0 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 959.47125 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 30 37 RAN GTP-binding nuclear protein Ran yes no 2 0.0021734 139.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 6 1 1 5 1.1423 1.0247 15.998 21 Median 1.0576 1.0495 29.051 3 0 Median 1.2678 1.0852 18.725 5 0 Median 1.0262 1.0296 11.759 6 0 Median 1.2254 1.0172 NaN 1 0 Median 1.1611 1.1847 NaN 1 0 Median 1.1423 0.93165 9.2705 5 0 Median 200380000 91785000 108590000 28825000 13391000 15433000 18587000 8211900 10375000 122680000 56507000 66175000 16065000 7273400 8791500 5897100 2766100 3130900 8320900 3635400 4685500 13463 623 14010 68573;68574;68575;68576;68577;68578;68579;68580;68581;68582;68583;68584;68585;68586;68587;68588;68589;68590;68591;68592;68593 69239;69240;69241;69242;69243;69244;69245;69246;69247;69248;69249;69250;69251;69252;69253;69254;69255;69256;69257;69258;69259;69260 69243 22 HLTGEFEKK LVGDGGTGKTTFVKRHLTGEFEKKYVATLG TTFVKRHLTGEFEKKYVATLGVEVHPLVFH R H L K K Y 0 0 0 0 0 0 2 1 1 0 1 2 0 1 0 0 1 0 0 0 0 0 9 1 1087.5662 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 30 38 RAN GTP-binding nuclear protein Ran yes no 2 0.020603 44.447 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 1.1268 1.1214 27.057 7 Median 1.1016 1.1217 NaN 1 0 Median 0.86317 0.78154 49.596 2 0 Median 1.1268 1.1239 NaN 1 0 Median 1.2469 1.1214 NaN 1 0 Median 1.1146 1.1702 NaN 1 0 Median 1.2643 1.0973 NaN 1 0 Median 11346000 5156400 6190100 1794400 876040 918390 935310 414150 521170 6584100 3001300 3582800 880300 365230 515070 976900 425930 550970 175330 73672 101660 13464 623 14011 68594;68595;68596;68597;68598;68599;68600 69261;69262;69263 69261 3 HLTHAQSTLDAK LWLVLPGVLVLDAVKHLTHAQSTLDAKATK AVKHLTHAQSTLDAKATKAKSKKN______ K H L A K A 2 0 0 1 0 1 0 0 2 0 2 1 0 0 0 1 2 0 0 0 0 0 12 0 1320.6786 Q15125 Q15125 210 221 EBP 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase yes yes 2;3 0.00017068 64.827 By MS/MS By MS/MS By matching By matching 9 7 3 1 1.2881 1.2064 18.215 20 Median 1.1391 1.1209 17.518 9 0 Median 1.5792 1.4051 2.7501 7 0 Median 1.2441 1.1325 15.996 3 0 Median 1.8387 1.4805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13626000 5385900 8240500 3363000 1504600 1858400 9082800 3352800 5730000 1048900 478380 570520 131720 50142 81573 0 0 0 0 0 0 13465 2930 14012 68601;68602;68603;68604;68605;68606;68607;68608;68609;68610;68611;68612;68613;68614;68615;68616;68617;68618;68619;68620 69264;69265;69266;69267;69268;69269;69270;69271;69272;69273;69274;69275 69273 12 HLTIVSLASR ESLPELSTAQQNKLKHLTIVSLASRMKCIP QNKLKHLTIVSLASRMKCIPYSVLLKDLEM K H L S R M 1 1 0 0 0 0 0 0 1 1 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1095.64 J3KQ34;Q9H9Q2;J3KQ41 J3KQ34 64 73 COPS7B COP9 signalosome complex subunit 7b yes no 2 0.00038325 98.033 By MS/MS By MS/MS By matching By MS/MS 2 3 3 1 1.2178 1.1042 9.7554 9 Median 1.0185 0.976 3.9523 2 0 Median 1.3276 1.1042 9.2549 3 0 Median 1.2178 1.1948 12.878 3 0 Median 1.3355 1.1137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86250000 41094000 45156000 58053000 28502000 29550000 17672000 8816500 8855700 8307300 3273300 5034000 2217900 502420 1715500 0 0 0 0 0 0 13466 1316 14013 68621;68622;68623;68624;68625;68626;68627;68628;68629 69276;69277;69278;69279;69280 69279 5 HLTPVTLELGGK GNTAVGKIVMEAAAKHLTPVTLELGGKSPC AAKHLTPVTLELGGKSPCYIDKDCDLDIVC K H L G K S 0 0 0 0 0 0 1 2 1 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1263.7187 P51648;J3QRD1;I3L1M4;J3QS00;E9PJV0;P48448;P30838;C9JKT2;C9JMC5;I3L3I9;A8MYB8;P43353;E9PNN6 P51648 200 211 ALDH3A2;ALDH3B2;ALDH3A1;ALDH3B1 Fatty aldehyde dehydrogenase;Aldehyde dehydrogenase family 3 member B2;Aldehyde dehydrogenase, dimeric NADP-preferring;Aldehyde dehydrogenase family 3 member B1 yes no 2 0.00072414 61.65 By MS/MS By MS/MS By MS/MS 1 1 1 1.0297 1.0173 40.779 3 Median 0.65629 0.60656 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0297 1.0173 NaN 1 0 Median 1.5184 1.3564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24902000 14059000 10843000 17839000 10908000 6931300 0 0 0 4052900 1909000 2143900 3009800 1242400 1767400 0 0 0 0 0 0 13467 1349 14014 68630;68631;68632 69281;69282;69283 69282 3 HLTYENVER YRGAVGALLVYDIAKHLTYENVERWLKELR VYDIAKHLTYENVERWLKELRDHADSNIVI K H L E R W 0 1 1 0 0 0 2 0 1 0 1 0 0 0 0 0 1 0 1 1 0 0 9 0 1159.5622 H3BSC1;P62491;H3BMH2;Q15907 Q15907 96 104 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.2045 1.048 2.9976 7 Median 1.096 1.0654 0.85479 2 0 Median 1.2216 1.0246 3.1964 2 0 Median 1.1139 1.0705 NaN 1 0 Median 1.2064 0.99996 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2581 1.0214 NaN 1 0 Median 73236000 33917000 39319000 42912000 20425000 22487000 17241000 7717600 9523600 8457000 4108300 4348700 3139000 1049000 2090000 0 0 0 1487200 617340 869850 13468 1233;2976 14015 68633;68634;68635;68636;68637;68638;68639 69284;69285;69286;69287;69288;69289;69290;69291;69292;69293;69294;69295;69296 69285 13 HLTYNDFINK LHGLPEQFLYGTATKHLTYNDFINKELILF GTATKHLTYNDFINKELILFSNSDNERSIP K H L N K E 0 0 2 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1263.6248 Q02880;E9PCY5 Q02880 713 722 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 0.0034955 69.812 By MS/MS By matching By MS/MS 2 1 1 1.0171 0.99277 18.001 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8449 0.93587 27.937 2 1 Median 1.0108 0.90864 NaN 1 0 Median 1.0257 1.0847 NaN 1 0 Median NaN NaN NaN 0 0 Median 29259000 16611000 12648000 0 0 0 0 0 0 26636000 15413000 11224000 305590 138920 166670 2317300 1059600 1257800 0 0 0 13469 2704 14016 68640;68641;68642;68643 69297;69298 69297 2 HLVDEPQNLIK DDPHACYSTVFDKLKHLVDEPQNLIKQNCD DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ K H L I K Q 0 0 1 1 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1304.7089 CON__P02769 CON__P02769 402 412 yes yes 2;3 5.4019E-27 173.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 8 6 4 4 5 0.15294 0.12708 218.1 27 Median 0.13444 0.12208 221.13 9 9 Median 0.15294 0.12708 327.06 7 6 Median 0.30897 0.33968 204.3 3 3 Median 0.2496 0.21461 136.85 2 2 Median 0.17698 0.17499 12.108 2 2 Median 0.096106 0.078946 134.35 4 4 Median 1880500000 1829000000 51447000 1324000000 1293700000 30321000 437030000 425200000 11834000 65248000 60226000 5021700 14515000 12959000 1556000 24600000 23079000 1521000 15029000 13836000 1193600 + 13470 746 14017 68644;68645;68646;68647;68648;68649;68650;68651;68652;68653;68654;68655;68656;68657;68658;68659;68660;68661;68662;68663;68664;68665;68666;68667;68668;68669;68670;68671;68672;68673;68674;68675;68676;68677;68678;68679;68680 69299;69300;69301;69302;69303;69304;69305;69306;69307;69308;69309;69310;69311;69312;69313;69314;69315;69316;69317;69318;69319;69320;69321;69322;69323;69324;69325;69326;69327;69328;69329;69330;69331;69332;69333;69334;69335;69336;69337;69338;69339 69300 41 HLVESTNEMAPLK DLHPDLEGQLKELRKHLVESTNEMAPLKVW RKHLVESTNEMAPLKVWQLQDLSFQTAARI K H L L K V 1 0 1 0 0 0 2 0 1 0 2 1 1 0 1 1 1 0 0 1 0 0 13 0 1467.7392 Q9NYU2 Q9NYU2 307 319 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2;3 1.6533E-06 116.55 By MS/MS By MS/MS 1 4 1.1844 1.0519 34.037 5 Median 0.94361 0.91181 NaN 1 0 Median 1.3103 1.1628 34.548 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25107000 11827000 13280000 12572000 6709300 5862900 12535000 5117700 7417200 0 0 0 0 0 0 0 0 0 0 0 0 13471 4179 14018 68681;68682;68683;68684;68685 69340;69341;69342;69343 69340 4 HLVFPLLEFLSVK AEYDLTTRIAHFLDRHLVFPLLEFLSVKEI DRHLVFPLLEFLSVKEIYNEKELLQGKLDL R H L V K E 0 0 0 0 0 0 1 0 1 0 4 1 0 2 1 1 0 0 0 2 0 0 13 0 1540.9017 P60228;H0YBR5;E5RHS5;E5RIP5;E5RJ25;E5RII3;H0YBP5 P60228 17 29 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 2.4616E-06 157.78 By MS/MS By matching 2 1 1.0487 0.89653 11.978 3 Median NaN NaN NaN 0 0 Median 1.0325 0.88097 2.4752 2 0 Median 1.0636 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36252000 17537000 18715000 0 0 0 34684000 16790000 17894000 1567800 746900 820880 0 0 0 0 0 0 0 0 0 13472 2524 14019 68686;68687;68688 69344;69345;69346;69347 69347 4 HLVGVCYTEDEAK QVCASCHSMDFVAYRHLVGVCYTEDEAKEL YRHLVGVCYTEDEAKELAAEVEVQDGPNED R H L A K E 1 0 0 1 1 0 2 1 1 0 1 1 0 0 0 0 1 0 1 2 0 0 13 0 1519.6977 P08574 P08574 134 146 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 2 2.309E-06 98.048 By MS/MS 2 1.7969 1.5234 17.651 2 Median NaN NaN NaN 0 0 Median 1.7969 1.5234 17.651 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3080300 874810 2205500 0 0 0 3080300 874810 2205500 0 0 0 0 0 0 0 0 0 0 0 0 13473 1903 14020 68689;68690 69348 69348 1 HLVLLDTAQAAAAGHR EPLMENGSGAWVRGRHLVLLDTAQAAAAGH LVLLDTAQAAAAGHRLLAEQEVLAPQVVLA R H L H R L 5 1 0 1 0 1 0 1 2 0 3 0 0 0 0 0 1 0 0 1 0 0 16 0 1642.8903 O00754;M0QZ24 O00754 842 857 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 3 7.9409E-11 107.37 By MS/MS 1 1.776 1.662 NaN 1 Median 1.776 1.662 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19495000 8070100 11425000 19495000 8070100 11425000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13474 1477 14021 68691 69349 69349 1 HLVLPIALNK FIDIADISSPPVLSRHLVLPIALNKGDEVG PVLSRHLVLPIALNKGDEVGTGITDDNEDE R H L N K G 1 0 1 0 0 0 0 0 1 1 3 1 0 0 1 0 0 0 0 1 0 0 10 0 1116.7019 H3BRY6;B4DVT3;B4DJL6;Q96SY0 H3BRY6 222 231 VWA9 von Willebrand factor A domain-containing protein 9 yes no 2 0.0074003 47.849 By MS/MS By MS/MS By matching 1 1 1 1.1701 0.99643 10.155 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85065 0.84063 NaN 1 0 Median 1.1701 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1768 0.99643 NaN 1 0 Median 9734500 5070200 4664300 0 0 0 0 0 0 7357300 4007300 3350000 1316000 571210 744810 0 0 0 1061200 491690 569500 13475 593 14022 68692;68693;68694 69350;69351;69352 69350 3 HLVMGDIPAAVNAFQEAASLLGK DVDSEAKKLLGLGQKHLVMGDIPAAVNAFQ AAVNAFQEAASLLGKKYGETANECGEAFFF K H L G K K 5 0 1 1 0 1 1 2 1 1 3 1 1 1 1 1 0 0 0 2 0 0 23 0 2351.2308 P49321;E9PI86;E9PPQ8 P49321 53 75 NASP Nuclear autoantigenic sperm protein yes no 3 0.063207 6.5598 By MS/MS By matching By matching 2 1 1 0.82782 0.81404 27.315 4 Median 0.82782 0.81404 5.1074 2 0 Median 1.4496 1.2444 NaN 1 0 Median 0.64705 0.64955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5276200 2646700 2629500 4176300 2199900 1976400 876250 322210 554040 223660 124600 99058 0 0 0 0 0 0 0 0 0 13476 2376 14023 68695;68696;68697;68698 69353 69353 1 HLVQITIK LDTKTKQIQQWIKKKHLVQITIKKGKNVDV QQWIKKKHLVQITIKKGKNVDVSENEMEEI K H L I K K 0 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 1 0 0 1 0 0 8 0 950.5913 Q9H2K0 Q9H2K0 187 194 MTIF3 Translation initiation factor IF-3, mitochondrial yes yes 2 0.0016797 93.429 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.9878 1.9292 39.059 5 Median 1.9878 1.9292 NaN 1 0 Median 1.2552 1.0811 25.415 2 1 Median 2.5004 2.4089 NaN 1 0 Median 2.2996 1.934 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13108000 4425200 8683000 3100800 967750 2133000 3490800 1492700 1998200 1835000 585450 1249500 4681600 1379300 3302200 0 0 0 0 0 0 13477 3943 14024 68699;68700;68701;68702;68703 69354;69355;69356 69356 3 HLVQTHYYNYR VCEKSNFGNHKSRHRHLVQTHYYNYRVSFL SRHRHLVQTHYYNYRVSFLIPECGILSEEL R H L Y R V 0 1 1 0 0 1 0 0 2 0 1 0 0 0 0 0 1 0 3 1 0 0 11 0 1492.7211 O75818;A0A087X1N3;F8WC38 O75818 31 41 RPP40 Ribonuclease P protein subunit p40 yes no 3 9.4509E-07 157.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1498 1.0387 5.0857 4 Median 1.1339 1.1297 NaN 1 0 Median 1.1905 1.0261 NaN 1 0 Median 0.96365 1.0515 NaN 1 0 Median 1.1658 1.0053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22804000 10600000 12204000 3383600 1751300 1632300 2712700 1247300 1465400 13555000 6148000 7407100 3152200 1453300 1698900 0 0 0 0 0 0 13478 1696 14025 68704;68705;68706;68707 69357;69358;69359;69360;69361;69362 69359 6 HLVSAGYVHVNR AVGFPGAGKSTFLKKHLVSAGYVHVNRDTL LKKHLVSAGYVHVNRDTLGSWQRCVTTCET K H L N R D 1 1 1 0 0 0 0 1 2 0 1 0 0 0 0 1 0 0 1 3 0 0 12 0 1350.7157 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2 M0QYH2 354 365 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 3 9.7612E-05 80.979 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 1 1.0352 0.96584 23.44 10 Median NaN NaN NaN 0 0 Median 1.088 0.94922 NaN 1 0 Median 0.84454 0.84086 41.29 3 0 Median 1.2201 1.0213 16.34 4 0 Median 0.98054 0.98275 NaN 1 0 Median 0.98488 0.84818 NaN 1 0 Median 40139000 19813000 20326000 0 0 0 791820 448240 343570 19509000 10198000 9311100 13327000 5848900 7478600 4312300 2308200 2004200 2198300 1009700 1188600 13479 1418 14026 68708;68709;68710;68711;68712;68713;68714;68715;68716;68717 69363;69364;69365;69366;69367;69368;69369;69370;69371;69372 69364 10 HLVSPEALDLLDK HSRKRWENFIHSENRHLVSPEALDLLDKLL NRHLVSPEALDLLDKLLRYDHQQRLTAKEA R H L D K L 1 0 0 2 0 0 1 0 1 0 4 1 0 0 1 1 0 0 0 1 0 0 13 0 1448.7875 P19784;H3BSA1;H3BV19 P19784 292 304 CSNK2A2 Casein kinase II subunit alpha yes no 2;3 7.4492E-07 112.13 By MS/MS 4 0.9243 0.90938 10.216 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9243 0.90938 10.216 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12955000 6650300 6305000 0 0 0 0 0 0 12955000 6650300 6305000 0 0 0 0 0 0 0 0 0 13480 2069 14027 68718;68719;68720;68721 69373;69374;69375;69376;69377 69373 5 HLVVPGDTITTDTGFMR ARKPLSERLGRDTKKHLVVPGDTITTDTGF VVPGDTITTDTGFMRGHGTYMGEEKLIASV K H L M R G 0 1 0 2 0 0 0 2 1 1 1 0 1 1 1 0 4 0 0 2 0 0 17 0 1858.9247 Q13868;A3KFL5;A3KFL2;A3KFL1 Q13868 25 41 EXOSC2 Exosome complex component RRP4 yes no 2 2.5022E-05 58.676 By MS/MS By matching 1 1 0.96369 0.86687 10.07 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83718 0.80729 NaN 1 0 Median 1.1093 0.93084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2306400 1249200 1057200 0 0 0 0 0 0 1669300 948990 720300 637090 300210 336890 0 0 0 0 0 0 13481 2843 14028 68722;68723 69378 69378 1 HLVVVDNR SLPRVFKLFRALGLRHLVVVDNRNQVVGLV FRALGLRHLVVVDNRNQVVGLVTRKDLARY R H L N R N 0 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 3 0 0 8 0 950.52976 P51798 P51798 768 775 CLCN7 H(+)/Cl(-) exchange transporter 7 yes yes 2 0.011909 56.011 By matching By MS/MS 2 2 1.2953 1.1601 19.94 4 Median 1.0177 0.99985 31.161 2 0 Median 1.3556 1.1601 0.89261 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2807800 1114700 1693100 463600 215650 247950 2344200 899100 1445100 0 0 0 0 0 0 0 0 0 0 0 0 13482 2442 14029 68724;68725;68726;68727 69379;69380;69381 69379 3 HLVYESDK WILPQDYDHAQAEARHLVYESDKNKDEKLT HAQAEARHLVYESDKNKDEKLTKEEILENW R H L D K N 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 1 0 0 8 0 989.48181 Q15293 Q15293 287 294 RCN1 Reticulocalbin-1 yes yes 2 0.011499 75.213 By MS/MS 1 0.51224 0.43893 NaN 1 Median NaN NaN NaN 0 0 Median 0.51224 0.43893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4474900 3150000 1325000 0 0 0 4474900 3150000 1325000 0 0 0 0 0 0 0 0 0 0 0 0 13483 2940 14030 68728 69382;69383 69383 2 HLVYESDQNKDGK WILPSDYDHAEAEARHLVYESDQNKDGKLT ARHLVYESDQNKDGKLTKEEIVDKYDLFVG R H L G K L 0 0 1 2 0 1 1 1 1 0 1 2 0 0 0 1 0 0 1 1 0 0 13 1 1531.7267 O43852;H0Y875 O43852 272 284 CALU Calumenin yes no 3 0.0654 13.185 By MS/MS By matching 1 1 1.0958 1.0101 5.7809 2 Median 1.0359 0.96963 NaN 1 0 Median 1.1591 1.0522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2365400 1132500 1232900 1101600 550670 550910 1263900 581860 682000 0 0 0 0 0 0 0 0 0 0 0 0 13484 1598 14031 68729;68730 69384 69384 1 HLWDYTFGPEK YPMENGIVRNWDDMKHLWDYTFGPEKLNID DDMKHLWDYTFGPEKLNIDTRNCKILLTEP K H L E K L 0 0 0 1 0 0 1 1 1 0 1 1 0 1 1 0 1 1 1 0 0 0 11 0 1391.651 P61160;F5H6T1 P61160 87 97 ACTR2 Actin-related protein 2 yes no 2 0.00013357 143.39 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.0485 0.8847 14.169 5 Median 0.95487 0.87998 NaN 1 0 Median 1.0877 0.93374 NaN 1 0 Median 0.7467 0.77075 NaN 1 0 Median 1.1973 1.0037 17.842 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58902000 30003000 28899000 27252000 14234000 13019000 3859100 1400000 2459100 26394000 13659000 12735000 1396400 709600 686800 0 0 0 0 0 0 13485 2546 14032 68731;68732;68733;68734;68735 69385;69386 69385 2 HLWENLGEK ETDRDIIREPLTELKHLWENLGEKIAHRQH PLTELKHLWENLGEKIAHRQHKLEGALLAL K H L E K I 0 0 1 0 0 0 2 1 1 0 2 1 0 0 0 0 0 1 0 0 0 0 9 0 1124.5615 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6303 6311 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.046441 78.334 By MS/MS 1 0.81556 0.88632 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81556 0.88632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2957900 2079800 878080 0 0 0 0 0 0 2957900 2079800 878080 0 0 0 0 0 0 0 0 0 13486 1220 14033 68736 69387 69387 0 HLWFQGIR QLILELIEKQETSNKHLWFQGIRRQITASE KQETSNKHLWFQGIRRQITASELLSSAIIT K H L I R R 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 8 0 1055.5665 P58107;A0A075B730 P58107 2171 2178 EPPK1 Epiplakin yes no 2 0.0023065 111.69 By MS/MS By MS/MS By matching 2 2 1 1.3498 1.2425 12.977 5 Median 1.3142 1.2724 3.6927 2 0 Median 1.3915 1.1467 11.355 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7166 1.5201 NaN 1 0 Median 76124000 32227000 43897000 47678000 19674000 28005000 28220000 12473000 15747000 0 0 0 0 0 0 0 0 0 226050 79879 146170 13487 2520 14034 68737;68738;68739;68740;68741 69388;69389;69390;69391 69388 4 HLWSPFGLR SSRLGPLLDILADSRHLWSPFGLRSLAASS ILADSRHLWSPFGLRSLAASSSFYGQRNSE R H L L R S 0 1 0 0 0 0 0 1 1 0 2 0 0 1 1 1 0 1 0 0 0 0 9 0 1111.5927 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 721 729 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.029888 48.561 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1518 1.0722 10.961 4 Median 1.1183 1.0582 NaN 1 1 Median 1.1864 1.0865 NaN 1 0 Median 0.82406 0.88388 NaN 1 0 Median 1.365 1.1336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11331000 5082500 6248900 9211300 3991200 5220100 561190 251670 309520 1383400 759440 623920 175490 80189 95299 0 0 0 0 0 0 13488 2835 14035 68742;68743;68744;68745 69392;69393;69394 69393 3 HLWVGNLPENVREEK ______________________________ HLWVGNLPENVREEKIIEHFKRYGRVESVK R H L E K I 0 1 2 0 0 0 3 1 1 0 2 1 0 0 1 0 0 1 0 2 0 0 15 1 1818.9377 Q96T58 Q96T58 7 21 SPEN Msx2-interacting protein yes yes 3 0.029044 18.833 By MS/MS By matching By matching 2 1 1 0.91174 0.91318 34.88 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92868 1.0239 5.8693 2 0 Median 0.90571 0.84892 NaN 1 0 Median 0.45961 0.49151 NaN 1 0 Median NaN NaN NaN 0 0 Median 50457000 25537000 24921000 0 0 0 0 0 0 44847000 22288000 22559000 1934000 750470 1183500 3675900 2498000 1177900 0 0 0 13489 3741 14036 68746;68747;68748;68749 69395 69395 1 HLYDIHVTVQPK MKEGKQFHRIVTYHRHLYDIHVTVQPKYKH YHRHLYDIHVTVQPKYKHVYPKNSVVRKSH R H L P K Y 0 0 0 1 0 1 0 0 2 1 1 1 0 0 1 0 1 0 1 2 0 0 12 0 1448.7776 A8MXV4 A8MXV4 348 359 NUDT19 Nucleoside diphosphate-linked moiety X motif 19, mitochondrial yes yes 2;3 0.0002222 67.704 By MS/MS By MS/MS 2 1 1.1648 1.1503 15.542 2 Median 1.113 1.0306 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2191 1.284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18516000 7856900 10659000 12813000 5280800 7531800 0 0 0 5703300 2576200 3127100 0 0 0 0 0 0 0 0 0 13490 548 14037 68750;68751;68752 69396;69397;69398 69396 3 HLYEEYVEKPLK ______________________________ SDKHLYEEYVEKPLKLVLKVGGNEVTELST K H L L K L 0 0 0 0 0 0 3 0 1 0 2 2 0 0 1 0 0 0 2 1 0 0 12 1 1546.8031 Q9NPI1 Q9NPI1 13 24 BRD7 Bromodomain-containing protein 7 yes yes 3 5.0666E-05 87.363 By MS/MS By MS/MS 2 1 1.2914 1.2709 18.844 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0827 1.2243 26.474 2 2 Median 1.301 1.2709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16548000 8047100 8500800 0 0 0 0 0 0 13030000 6501800 6528600 3517400 1545300 1972100 0 0 0 0 0 0 13491 4053 14038 68753;68754;68755 69399;69400;69401;69402 69402 4 HLYHSSQNELAK QGENKELLSQLEETRHLYHSSQNELAKLES ETRHLYHSSQNELAKLESELKSLKDQLTDL R H L A K L 1 0 1 0 0 1 1 0 2 0 2 1 0 0 0 2 0 0 1 0 0 0 12 0 1425.7001 Q14789 Q14789 2298 2309 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.072216 10.326 By MS/MS 1 1.2447 1.2378 NaN 1 Median 1.2447 1.2378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1084300 421790 662540 1084300 421790 662540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13492 2900 14039 68756 69403 69403 1 HLYLTEK GIDGNGKAPSKSELRHLYLTEKYVWRWKQF APSKSELRHLYLTEKYVWRWKQFLSRRGKR R H L E K Y 0 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 902.48617 Q5T4S7 Q5T4S7 4094 4100 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.058559 49.058 By MS/MS 1 1.4745 1.2915 NaN 1 Median NaN NaN NaN 0 0 Median 1.4745 1.2915 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1905800 694470 1211400 0 0 0 1905800 694470 1211400 0 0 0 0 0 0 0 0 0 0 0 0 13493 3089 14040 68757 69404 69404 1 HLYTKDIDIHEVR KVCFEMKVTEKIPVRHLYTKDIDIHEVRIG VRHLYTKDIDIHEVRIGWSLTTSGMLLGEE R H L V R I 0 1 0 2 0 0 1 0 2 2 1 1 0 0 0 0 1 0 1 1 0 0 13 1 1637.8526 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 348 360 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 4 0.010876 38.799 By MS/MS By MS/MS 1 1 1.0284 1.0572 15.525 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98575 0.94732 NaN 1 0 Median 1.073 1.1799 NaN 1 0 Median NaN NaN NaN 0 0 Median 6806500 2967800 3838700 0 0 0 0 0 0 0 0 0 1418000 618520 799510 5388500 2349300 3039200 0 0 0 13494 2680 14041 68758;68759 69405;69406 69405 1 HLYTLDGGDIINALCFSPNR GKDGQAMLWDLNEGKHLYTLDGGDIINALC DGGDIINALCFSPNRYWLCAATGPSIKIWD K H L N R Y 1 1 2 2 1 0 0 2 1 2 3 0 0 1 1 1 1 0 1 0 0 0 20 0 2275.1056 P63244;J3KPE3;D6RAC2;D6REE5;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;H0Y8R5;D6RF23 P63244 226 245 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 0.00046183 29.444 By MS/MS 1 0.89833 0.74708 NaN 1 Median NaN NaN NaN 0 0 Median 0.89833 0.74708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12264000 5299500 6964200 0 0 0 12264000 5299500 6964200 0 0 0 0 0 0 0 0 0 0 0 0 13495 2624 14042 68760 69407;69408 69408 2 HLYVLAAEPR PAHSTDNRYHLQALRHLYVLAAEPRLLVPV LQALRHLYVLAAEPRLLVPVDVDTNTPCYA R H L P R L 2 1 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 1 1 0 0 10 0 1167.64 Q9H1A4;H0Y564 Q9H1A4 1608 1617 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.0031972 57.59 By MS/MS 1 0.91094 0.79901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91094 0.79901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1582800 871580 711250 0 0 0 0 0 0 0 0 0 1582800 871580 711250 0 0 0 0 0 0 13496 3933 14043 68761 69409 69409 1 HLYVVVDGSR RVFEHHGQVRLGMMRHLYVVVDGSRTMEDQ LGMMRHLYVVVDGSRTMEDQDLKPNRLTCT R H L S R T 0 1 0 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 3 0 0 10 0 1143.6037 D6RID8;Q6P1K8;Q13888;D6RJD3;D6RIT7;D6RGC9;R4GMS9 D6RID8 60 69 GTF2H2C;GTF2H2 General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2 0.00069072 99.136 By MS/MS By MS/MS By MS/MS 1 1 1 0.91067 0.99438 47.899 3 Median NaN NaN NaN 0 0 Median 0.54496 0.46754 NaN 1 1 Median 0.91067 0.99438 NaN 1 0 Median 1.3168 1.1367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20871000 11338000 9533400 0 0 0 2138900 1275200 863670 15743000 8771800 6971500 2989400 1291200 1698200 0 0 0 0 0 0 13497 827 14044 68762;68763;68764 69410;69411;69412;69413;69414 69410 5 HMDITEDLTNK ELCKILEEMREEIHRHMDITEDLTNKARGS EIHRHMDITEDLTNKARGSNKSFLAAANEE R H M N K A 0 0 1 2 0 0 1 0 1 1 1 1 1 0 0 0 2 0 0 0 0 0 11 0 1315.6078 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 530 540 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 1.7602E-21 194.06 By MS/MS By MS/MS 3 2 1.0451 1.0838 3.1647 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0156 1.0832 3.1115 3 0 Median 1.1965 1.1143 3.9318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39851000 18567000 21284000 0 0 0 0 0 0 36835000 17332000 19502000 3016200 1234300 1781800 0 0 0 0 0 0 13498 2762 14045 68765;68766;68767;68768;68769 69415;69416;69417;69418;69419;69420 69416 6 HMEMYADR RGGSWVVIDSSINPRHMEMYADRESRGSVL DSSINPRHMEMYADRESRGSVLEPEGTVEI R H M D R E 1 1 0 1 0 0 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 8 0 1051.4215 Q13085;Q59FY4 Q13085 2104 2111 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.049701 34.808 By MS/MS 1 1.1454 0.9925 NaN 1 Median NaN NaN NaN 0 0 Median 1.1454 0.9925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 665230 273780 391460 0 0 0 665230 273780 391460 0 0 0 0 0 0 0 0 0 0 0 0 13499 2784 14046 68770 69421 69421 1 HMLADVFSVK NACYALKVRGSEIPKHMLADVFSVKTEMID SEIPKHMLADVFSVKTEMIDQEEGIS____ K H M V K T 1 0 0 1 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 2 0 0 10 0 1145.5903 Q99598 Q99598 270 279 TSNAX Translin-associated protein X yes yes 2 0.00050373 118.5 By MS/MS By matching 1 1 1.227 1.0714 6.626 2 Median 1.1255 1.0224 NaN 1 0 Median 1.3377 1.1228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24377000 11224000 13153000 20691000 9674400 11016000 3686000 1549900 2136100 0 0 0 0 0 0 0 0 0 0 0 0 13500 3756 14047 68771;68772 69422;69423 69422 2 HMLEEEGTLDLLGLKR HVLKLDIEASEAECRHMLEEEGTLDLLGLK MLEEEGTLDLLGLKRELEALNKQCGKLTER R H M K R E 0 1 0 1 0 0 3 2 1 0 5 1 1 0 0 0 1 0 0 0 0 0 16 1 1852.9717 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5185 5200 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00012166 45.863 By MS/MS 1 1.3655 1.2828 NaN 1 Median NaN NaN NaN 0 0 Median 1.3655 1.2828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3687700 1490300 2197400 0 0 0 3687700 1490300 2197400 0 0 0 0 0 0 0 0 0 0 0 0 13501 1220 14048 68773 69424 69424 1 HMLPSGFR ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV GSNKKTKHMLPSGFRKFLVHNVKELEVLLM K H M F R K 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 8 0 943.46981 D3YTB1;F8W727;P62910 D3YTB1 68 75 RPL32 60S ribosomal protein L32 yes no 2 0.0034678 94.407 By MS/MS By MS/MS By MS/MS 1 3 1 1.0653 0.90445 72.282 5 Median 0.93687 0.90445 NaN 1 0 Median 1.0653 0.88235 95.786 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1654 0.91294 NaN 1 0 Median 51225000 25861000 25364000 15767000 8447300 7319600 32914000 16314000 16600000 0 0 0 0 0 0 0 0 0 2544400 1099700 1444700 13502 798 14049 68774;68775;68776;68777;68778 69425;69426;69427;69428;69429;69430;69431;69432 69428 8 HMLPSGFRK ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV SNKKTKHMLPSGFRKFLVHNVKELEVLLMC K H M R K F 0 1 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 0 0 0 0 0 9 1 1071.5648 D3YTB1;F8W727;P62910 D3YTB1 68 76 RPL32 60S ribosomal protein L32 yes no 2 0.0031318 73.616 By MS/MS 1 1.0873 0.95953 NaN 1 Median NaN NaN NaN 0 0 Median 1.0873 0.95953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6705700 2788800 3916800 0 0 0 6705700 2788800 3916800 0 0 0 0 0 0 0 0 0 0 0 0 13503 798 14050 68779 69433;69434 69434 2 HMLPTVLR INVLSEVCGQDITTKHMLPTVLRMAGDPVA GQDITTKHMLPTVLRMAGDPVANVRFNVAK K H M L R M 0 1 0 0 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 1 0 0 8 0 965.54806 P30153;B3KQV6;E9PH38 P30153 520 527 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0024054 130.77 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 2 1.0231 0.92051 5.6841 10 Median 0.98206 0.92839 1.7204 2 0 Median 1.0243 0.88367 6.0173 5 0 Median 0.97751 1.0254 NaN 1 0 Median 1.1119 0.93055 1.0183 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172200000 85232000 86964000 76064000 39053000 37011000 88968000 43159000 45808000 2722500 1115300 1607200 4442200 1904300 2537800 0 0 0 0 0 0 13504 2190 14051;14052 68780;68781;68782;68783;68784;68785;68786;68787;68788;68789;68790 69435;69436;69437;69438;69439;69440;69441;69442;69443;69444;69445 69439 930 11 HMNSAGVLATLR TDIHGNVLQYHKDVKHMNSAGVLATLRNYD DVKHMNSAGVLATLRNYDYYASRVPESIKN K H M L R N 2 1 1 0 0 0 0 1 1 0 2 0 1 0 0 1 1 0 0 1 0 0 12 0 1268.6659 O95861 O95861 278 289 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes yes 3 0.0003985 79.283 By MS/MS By MS/MS 2 1 0.34072 0.31061 104.22 2 Median 0.6495 0.64905 NaN 1 1 Median 0.17874 0.14864 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32743000 26098000 6645100 20016000 15019000 4997000 12727000 11079000 1648100 0 0 0 0 0 0 0 0 0 0 0 0 13505 1799 14053;14054 68791;68792;68793 69446;69447;69448 69446 574 3 HMNSVPQKPALIPQPTFTEK RAYLEAHETFNEWFKHMNSVPQKPALIPQP PQKPALIPQPTFTEKVAHEHKEKKYEMDFG K H M E K V 1 0 1 0 0 2 1 0 1 1 1 2 1 1 4 1 2 0 0 1 0 0 20 1 2262.1831 P57740 P57740 766 785 NUP107 Nuclear pore complex protein Nup107 yes yes 3 2.8755E-07 52.784 By matching By MS/MS 1 1 0.55916 0.61361 11.693 2 Median 0.63098 0.66651 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49552 0.56492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27976000 17930000 10046000 2587400 1457100 1130300 0 0 0 25389000 16473000 8915800 0 0 0 0 0 0 0 0 0 13506 2518 14055 68794;68795 69449;69450 69450 2 HMQEWLETR GTVQGQLQGPISKVRHMQEWLETRGSPKSH PISKVRHMQEWLETRGSPKSHIDKANFNNE R H M T R G 0 1 0 0 0 1 2 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 9 0 1228.5659 G3V2U7;P07311 G3V2U7 91 99 ACYP1 Acylphosphatase;Acylphosphatase-1 yes no 2 0.003169 66.962 By matching By MS/MS 1 1 1.0614 0.96649 13.294 2 Median 0.89936 0.87977 NaN 1 0 Median 1.2527 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5418800 2428400 2990400 1635200 1000800 634380 3783600 1427500 2356000 0 0 0 0 0 0 0 0 0 0 0 0 13507 1110 14056 68796;68797 69451 69451 1 HMQGIQFR LDQPLFEVIQEAMQKHMQGIQFRERNAGPQ IQEAMQKHMQGIQFRERNAGPQIDRNMKDE K H M F R E 0 1 0 0 0 2 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 8 0 1015.5022 P35573 P35573 1211 1218 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.033452 67.035 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13508 2243 14057 68798 69452 69452 1 HMQLYCDR LQELPDAVPHGEMPRHMQLYCDRYLCDKVV PHGEMPRHMQLYCDRYLCDKVVPGNRVTIM R H M D R Y 0 1 0 1 1 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1121.4746 P33992;B1AHB1;B1AHB2 P33992 244 251 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.0044009 81.784 By MS/MS 1 1.0509 0.91061 NaN 1 Median NaN NaN NaN 0 0 Median 1.0509 0.91061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3460900 1576900 1884000 0 0 0 3460900 1576900 1884000 0 0 0 0 0 0 0 0 0 0 0 0 13509 2224 14058 68799 69453;69454 69454 2 HMQNSEIIR QCSGCKGVVTAEMFRHMQNSEIIRKMTEEF TAEMFRHMQNSEIIRKMTEEFDEDSGDYPL R H M I R K 0 1 1 0 0 1 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 9 0 1126.5553 Q8N3U4;B1AMT4;B1AMT2;B1AMT3;B1AMT1 Q8N3U4 138 146 STAG2 Cohesin subunit SA-2 yes no 2 0.0032979 66.073 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.1182 1.0569 13.245 6 Median NaN NaN NaN 0 0 Median 1.3447 1.1424 NaN 1 0 Median 0.90382 0.98486 NaN 1 0 Median 1.206 1.0291 NaN 1 0 Median 0.94664 0.99989 11.62 2 0 Median 1.6031 1.3457 NaN 1 0 Median 9788700 4432400 5356400 0 0 0 3739600 1503000 2236600 1787000 875200 911810 1003400 447540 555870 3011000 1503900 1507100 247720 102740 144980 13510 3369 14059 68800;68801;68802;68803;68804;68805 69455;69456;69457 69457 3 HMQTFYR NEADLRCMAVPPKYRHMQTFYRYYSGEKKA MAVPPKYRHMQTFYRYYSGEKKAPVLTLFI R H M Y R Y 0 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 7 0 981.44907 Q9UK59;F8WAY1 Q9UK59 60 66 DBR1 Lariat debranching enzyme yes no 2 0.019471 61.494 By matching By MS/MS 1 1 1.1286 1.0579 10.18 2 Median 0.96959 0.9844 NaN 1 0 Median 1.3136 1.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7266100 3132900 4133200 1346400 651550 694880 5919700 2481300 3438300 0 0 0 0 0 0 0 0 0 0 0 0 13511 4306 14060 68806;68807 69458 69458 1 HMVFLGGAVLADIMK LSKFKIRIEDPPRRKHMVFLGGAVLADIMK HMVFLGGAVLADIMKDKDNFWMTRQEYQEK K H M M K D 2 0 0 1 0 0 0 2 1 1 2 1 2 1 0 0 0 0 0 2 0 0 15 0 1600.8469 P61160;F5H6T1 P61160 352 366 ACTR2 Actin-related protein 2 yes no 2 0.00032954 52.79 By MS/MS By MS/MS 2 1 1.2764 1.0879 4.7424 3 Plateau NaN NaN NaN 0 0 Median 1.1909 1.0404 6.3232 2 0 Median NaN NaN NaN 0 0 Median 1.2781 1.0692 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11209000 4732400 6476900 0 0 0 10606000 4548300 6057700 0 0 0 603290 184100 419190 0 0 0 0 0 0 13512 2546 14061 68808;68809;68810 69459;69460;69461 69459 3 HMVSDKFQVR EADIFIGVVYYQRLRHMVSDKFQVRTTGAR YQRLRHMVSDKFQVRTTGARDRVTNQPIGG R H M V R T 0 1 0 1 0 1 0 0 1 0 0 1 1 1 0 1 0 0 0 2 0 0 10 1 1245.6288 Q9H9Y6 Q9H9Y6 1004 1013 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 3 0.0059559 50.473 By MS/MS 1 2.06 2.3432 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.06 2.3432 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2465400 868570 1596800 0 0 0 0 0 0 2465400 868570 1596800 0 0 0 0 0 0 0 0 0 13513 4004 14062 68811 69462 69462 1 HMYHSLYLK RRLLRRYRESKKIDRHMYHSLYLKVKGNVF SKKIDRHMYHSLYLKVKGNVFKNKRILMEH R H M L K V 0 0 0 0 0 0 0 0 2 0 2 1 1 0 0 1 0 0 2 0 0 0 9 0 1190.5906 J3QR09;J3KTE4;P84098 J3QR09 115 123 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 0.00050769 119.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 2 5 1.2045 1.1236 12.618 10 Median 1.2104 1.1236 0.83721 2 0 Median 1.112 0.9305 4.8011 3 0 Median 1.2529 1.1791 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2105 1.2356 NaN 1 0 Median 1.494 1.2135 17.62 3 0 Median 212050000 45498000 166550000 104540000 23352000 81191000 37035000 7987300 29048000 14895000 2528300 12367000 1363800 0 1363800 41141000 8443300 32697000 13068000 3187400 9880800 13514 1335 14063;14064 68812;68813;68814;68815;68816;68817;68818;68819;68820;68821;68822;68823;68824;68825;68826;68827;68828;68829;68830 69463;69464;69465;69466;69467;69468;69469;69470;69471;69472;69473;69474;69475;69476;69477;69478;69479;69480;69481 69465 441 19 HNALIQEVISQSR QAAIVRIMKARKVLRHNALIQEVISQSRAR LRHNALIQEVISQSRARFNPSISMIKKCIE R H N S R A 1 1 1 0 0 2 1 0 1 2 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1493.795 A0A0A0MTN0;Q13617 A0A0A0MTN0 709 721 CUL2 Cullin-2 yes no 2;3 4.5043E-05 125.74 By MS/MS By MS/MS By MS/MS 3 2 1 1.0688 0.97025 23.697 6 Median 1.1181 1.058 16.196 3 1 Median 1.1172 0.98843 14.873 2 0 Median 0.57083 0.5949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26937000 12966000 13971000 18383000 8958400 9424600 2949500 1311000 1638500 5604800 2696900 2908000 0 0 0 0 0 0 0 0 0 13515 196 14065 68831;68832;68833;68834;68835;68836 69482;69483;69484;69485;69486;69487;69488 69484 7 HNDDEQYAWESSAGGSFTVR YSAYLVAEKVTVITKHNDDEQYAWESSAGG QYAWESSAGGSFTVRTDTGEPMGRGTKVIL K H N V R T 2 1 1 2 0 1 2 2 1 0 0 0 0 1 0 3 1 1 1 1 0 0 20 0 2254.9516 P07900;Q14568;P08238 P07900 154 173 HSP90AA1;HSP90AA2P;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta no no 2;3 8.2782E-199 319.74 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1.1338 1.0792 7.638 9 Median 1.159 1.1098 2.1712 3 0 Median 1.1258 0.97358 4.441 3 0 Median 1.0652 1.1304 0.64374 2 0 Median 1.2614 1.0407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175540000 77805000 97739000 125040000 53761000 71281000 24286000 11019000 13267000 26087000 12967000 13120000 128270 57254 71014 0 0 0 0 0 0 13516 1894;1899 14066 68837;68838;68839;68840;68841;68842;68843;68844;68845 69489;69490;69491;69492;69493;69494;69495;69496;69497;69498;69499;69500;69501;69502;69503;69504;69505;69506;69507;69508;69509;69510 69502 22 HNDLDDVGK SRAANTQKCIRAGGKHNDLDDVGKDVYHHT IRAGGKHNDLDDVGKDVYHHTFFEMLGSWS K H N G K D 0 0 1 3 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1011.4621 P49588 P49588 82 90 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 7.7864E-05 149.27 By matching By MS/MS By matching 1 2 1 1.1223 1.0999 18.286 4 Median 1.0516 1.0503 NaN 1 0 Median 1.3694 1.1965 29.828 2 0 Median 1.0992 1.1518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15732000 6834300 8897700 1961900 822870 1139000 13333000 5813200 7520000 436860 198210 238640 0 0 0 0 0 0 0 0 0 13517 2385 14067 68846;68847;68848;68849 69511;69512 69512 2 HNDMADLER QKGLQASRSDIKLFKHNDMADLERLLKEQE DIKLFKHNDMADLERLLKEQEIEDQKNPRK K H N E R L 1 1 1 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1099.4717 O15269 O15269 211 219 SPTLC1 Serine palmitoyltransferase 1 yes yes 2 0.0018623 76.827 By MS/MS 1 1.3061 1.1318 NaN 1 Median NaN NaN NaN 0 0 Median 1.3061 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1726100 767190 958920 0 0 0 1726100 767190 958920 0 0 0 0 0 0 0 0 0 0 0 0 13518 1536 14068 68850 69513 69513 1 HNDVVPTMAQGVLEYK TLSQFTDALVTIRNRHNDVVPTMAQGVLEY NDVVPTMAQGVLEYKDTYGDDPVSNQNIQY R H N Y K D 1 0 1 1 0 1 1 1 1 0 1 1 1 0 1 0 1 0 1 3 0 0 16 0 1799.8876 D6RGV8;D6RHG2;D6RJH7;D6R983;D6RDN9;Q15119 D6RGV8 59 74 PDK2 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial yes no 3 3.0208E-05 68.944 By MS/MS By MS/MS 2 1 1.4154 1.3226 17.065 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1979 1.1723 NaN 1 0 Median 1.6725 1.4923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9038100 3360600 5677600 0 0 0 0 0 0 6610200 2663400 3946900 2427900 697230 1730700 0 0 0 0 0 0 13519 800 14069 68851;68852;68853 69514;69515;69516 69514 3 HNEFDFISGTR YNKAKKAMDFYDPARHNEFDFISGTRMRKL DPARHNEFDFISGTRMRKLAREGENPPDGF R H N T R M 0 1 1 1 0 0 1 1 1 1 0 0 0 2 0 1 1 0 0 0 0 0 11 0 1321.6051 O95340 O95340 570 580 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 1.4058E-13 135.55 By MS/MS By MS/MS 2 1 1.2931 1.1724 12.268 2 Median 1.3496 1.2787 NaN 1 1 Median 1.2389 1.075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17974000 6751400 11222000 14952000 5732800 9219500 3021200 1018600 2002600 0 0 0 0 0 0 0 0 0 0 0 0 13520 1765 14070 68854;68855;68856 69517;69518;69519 69518 3 HNELTGDNVGPLILK WRSKTFPACDGSHNKHNELTGDNVGPLILK HNELTGDNVGPLILKKKEV___________ K H N L K K 0 0 2 1 0 0 1 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 15 0 1618.8679 Q8N5K1;D6RCF4 Q8N5K1 117 131 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 3.3742E-05 84.658 By MS/MS By matching By MS/MS 1 1 1 1.3368 1.2803 21.659 3 Plateau 0.92449 0.87446 NaN 1 0 Median 1.5171 1.2531 NaN 1 0 Median 1.3368 1.29 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14120000 5984500 8135200 3313400 1925600 1387900 5355300 2221700 3133600 5451000 1837300 3613700 0 0 0 0 0 0 0 0 0 13521 3379 14071 68857;68858;68859 69520;69521 69520 2 HNFTIMTK KRQSLKLLGELLLDRHNFTIMTKYISKPEN GELLLDRHNFTIMTKYISKPENLKLMMNLL R H N T K Y 0 0 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 0 0 8 0 990.49569 Q9Y376;A0A087X0K1 Q9Y376 241 248 CAB39 Calcium-binding protein 39 yes no 2 0.013762 52.403 By MS/MS By matching 2 1 1.0325 0.86922 13.903 3 Median 0.99859 0.97392 17.332 2 0 Median 1.0325 0.86922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5503900 2701900 2802000 2641500 1305500 1335900 2862400 1396300 1466100 0 0 0 0 0 0 0 0 0 0 0 0 13522 4406 14072 68860;68861;68862 69522 69522 1 HNFTPLAR GAGAVIIASEDAVKKHNFTPLARIVGYFVS SEDAVKKHNFTPLARIVGYFVSGCDPSIMG K H N A R I 1 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 8 0 954.50355 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 268 275 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.0035542 89.142 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.98832 1.0064 6.6145 5 Median 0.98832 1.0064 NaN 1 0 Median 1.1068 0.96422 NaN 1 0 Median 0.89882 0.95212 NaN 1 0 Median 1.1636 1.0276 NaN 1 0 Median 0.95341 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median 9761600 4519100 5242500 1332000 668820 663170 6248600 2848500 3400100 1192600 621760 570810 780070 289990 490080 208410 90079 118330 0 0 0 13523 220 14073 68863;68864;68865;68866;68867 69523;69524;69525;69526;69527 69527 5 HNGPNDASDGTVR ______________________________ MKHNGPNDASDGTVRLRGLPFGCSKEEIVQ K H N V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 0 1 1 1 0 0 1 0 0 13 0 1338.5913 P31942 P31942 7 19 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2;3 0.0035011 34.685 By MS/MS 3 0.78802 0.84689 9.8792 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78802 0.84689 9.8792 3 0 Median NaN NaN NaN 0 0 Median 3268900 1778100 1490700 0 0 0 0 0 0 0 0 0 0 0 0 3268900 1778100 1490700 0 0 0 13524 2208 14074 68868;68869;68870 69528;69529;69530;69531 69531 4 HNHWAGLYGR FNTLIPWCLPHTGNRHNHWAGLYGRLEWDG HTGNRHNHWAGLYGRLEWDGFFSTTVTNPE R H N G R L 1 1 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 1 0 0 0 10 0 1209.5792 P26358;K7ENW7 P26358 1507 1516 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 0.00018292 108.43 By MS/MS By MS/MS 2 5 1.0961 0.95484 8.7832 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92963 1.0138 16.402 2 1 Median 1.1174 0.95484 6.7523 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31636000 15635000 16001000 0 0 0 0 0 0 17979000 8918000 9060800 13658000 6717100 6940600 0 0 0 0 0 0 13525 2142 14075 68871;68872;68873;68874;68875;68876;68877 69532;69533;69534;69535;69536;69537;69538;69539;69540;69541;69542 69536 11 HNIAYFPQIVSVAAR GSSVLFLCDMQEKFRHNIAYFPQIVSVAAR HNIAYFPQIVSVAARMLKVARLLEVPVMLT R H N A R M 3 1 1 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 1 2 0 0 15 0 1684.9049 Q96AB3;K7ENV7;K7EKW4 Q96AB3 29 43 ISOC2 Isochorismatase domain-containing protein 2, mitochondrial yes no 2;3 1.3615E-06 95.018 By MS/MS 4 0.66276 0.64614 11.107 4 Median 0.66276 0.64614 11.107 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19647000 12016000 7631000 19647000 12016000 7631000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13526 3597 14076 68878;68879;68880;68881 69543;69544;69545;69546 69543 4 HNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSK ADKQKNGIKVNFKIRHNIEDGSVQLADHYQ LPDNHYLSTQSALSKDPNEKRDHMVLLEFV R H N S K D 2 0 3 4 0 4 1 3 3 2 5 1 0 0 3 4 2 0 2 2 0 0 41 0 4471.168 CON__Q9U6Y5 CON__Q9U6Y5 169 209 yes yes 4;5 1.2851E-44 88.118 By matching By MS/MS By MS/MS By matching 1 3 6 2 0.66726 0.65436 29.581 11 Median 0.90843 0.88082 NaN 1 0 Median 0.65818 0.56059 22.034 3 0 Plateau 0.67814 0.68174 23.9 6 1 Median 1.062 0.94794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 316220000 172010000 144210000 828800 496770 332030 30958000 17758000 13199000 280820000 152500000 128330000 3609900 1256900 2353000 0 0 0 0 0 0 + 13527 795 14077 68882;68883;68884;68885;68886;68887;68888;68889;68890;68891;68892;68893 69547;69548;69549;69550;69551;69552;69553;69554;69555 69548 9 HNIIYVNGSVPGHK YRTEYGLKVWRINTKHNIIYVNGSVPGHKN KHNIIYVNGSVPGHKNCLVKVKDSKLPAYK K H N H K N 0 0 2 0 0 0 0 2 2 2 0 1 0 0 1 1 0 0 1 2 0 0 14 0 1533.8052 H0Y9G6;E7ETU7;P09001 H0Y9G6 295 308 MRPL3 39S ribosomal protein L3, mitochondrial yes no 3 0.038803 25.322 By MS/MS 1 0.83277 0.80476 NaN 1 Median 0.83277 0.80476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3823600 1767900 2055700 3823600 1767900 2055700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13528 889 14078 68894 69556 69556 1 HNIQALLK EEARSLRECELYVQKHNIQALLKDSIVQLC CELYVQKHNIQALLKDSIVQLCTARPERPM K H N L K D 1 0 1 0 0 1 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 935.55525 P10644;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPR5;K7EQK3;K7EMU2;X6RAV4;K7EMZ6 P10644 25 32 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 0.0087245 79.469 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2174 1.1613 58.755 4 Median 3.3309 3.1938 NaN 1 0 Median 0.97282 0.82689 NaN 1 1 Median 1.2228 1.2453 NaN 1 0 Median 1.212 1.083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13796000 6555500 7240300 2864800 751220 2113600 6234300 3722800 2511500 1515000 740300 774660 3181800 1341200 1840600 0 0 0 0 0 0 13529 1945 14079 68895;68896;68897;68898 69557;69558;69559 69558 3 HNIQFSSFDIFSDEEVR PRCGFSKQMVEILHKHNIQFSSFDIFSDEE IQFSSFDIFSDEEVRQGLKAYSSWPTYPQL K H N V R Q 0 1 1 2 0 1 2 0 1 2 0 0 0 3 0 3 0 0 0 1 0 0 17 0 2068.949 O76003 O76003 172 188 GLRX3 Glutaredoxin-3 yes yes 3 5.6166E-06 76.151 By MS/MS 1 0.93732 0.81314 NaN 1 Median NaN NaN NaN 0 0 Median 0.93732 0.81314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4262000 2143600 2118400 0 0 0 4262000 2143600 2118400 0 0 0 0 0 0 0 0 0 0 0 0 13530 1715 14080 68899 69560;69561 69560 2 HNISHMSMDIAR KDEDRTSLATFHEGKHNISHMSMDIARGLM EGKHNISHMSMDIARGLMVTCGTDRIVKIW K H N A R G 1 1 1 1 0 0 0 0 2 2 0 0 2 0 0 2 0 0 0 0 0 0 12 0 1410.6496 Q8IWB7 Q8IWB7 367 378 WDFY1 WD repeat and FYVE domain-containing protein 1 yes yes 3 0.0010243 53.967 By MS/MS By MS/MS By MS/MS 2 1 1 0.96938 0.9861 12.386 3 Median 0.96938 0.9861 NaN 1 0 Median 1.3907 1.1975 NaN 1 0 Median 0.9095 0.95127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371300 1315900 2055400 1386900 532460 854440 1048500 317110 731350 935960 466320 469640 0 0 0 0 0 0 0 0 0 13531 3324 14081 68900;68901;68902;68903 69562;69563;69564;69565 69562 4 HNITLLWDR VNKELNFWAKRAKQRHNITLLWDREVADVL KRAKQRHNITLLWDREVADVLVDGYNVHYG R H N D R E 0 1 1 1 0 0 0 0 1 1 2 0 0 0 0 0 1 1 0 0 0 0 9 0 1166.6196 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 600 608 CLPB Caseinolytic peptidase B protein homolog yes no 2 0.0086001 66.692 By MS/MS By MS/MS 1 1 0.67329 0.63226 29.709 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76172 0.78006 NaN 1 1 Median 0.59513 0.51246 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7777100 4105100 3672000 0 0 0 0 0 0 6034200 3193400 2840900 1742800 911730 831120 0 0 0 0 0 0 13532 1181 14082 68904;68905 69566;69567 69566 2 HNKEFLLSMANR SIYGGFFEDESFAVKHNKEFLLSMANRGKD AVKHNKEFLLSMANRGKDTNGSQFFITTKP K H N N R G 1 1 2 0 0 0 1 0 1 0 2 1 1 1 0 1 0 0 0 0 0 0 12 1 1458.7402 C9JN15;C9JM79;Q13427;E9PG73 C9JN15 104 115 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 3 0.0012884 60.301 By MS/MS 1 1.116 1.2273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.116 1.2273 NaN 1 1 Median NaN NaN NaN 0 0 Median 6190800 3017500 3173200 0 0 0 0 0 0 0 0 0 0 0 0 6190800 3017500 3173200 0 0 0 13533 709 14083 68906 69568 69568 1 HNLEIIK FLMKHVFHPKRAVFRHNLEIIKTLVECWKD HPKRAVFRHNLEIIKTLVECWKDCLSIPYR R H N I K T 0 0 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 865.50215 P78527 P78527 2233 2239 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0018686 111.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1.2843 1.1198 29.001 8 Median 0.97508 0.94408 1.13 2 0 Median 1.3426 1.1991 38.94 3 1 Median 0.92557 0.98703 NaN 1 0 Median 1.4011 1.3856 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3078 1.1204 NaN 1 0 Median 85229000 38765000 46464000 7049100 3421700 3627400 39983000 16669000 23314000 25862000 13354000 12509000 8096100 3550100 4545900 0 0 0 4238300 1769800 2468600 13534 2647 14084 68907;68908;68909;68910;68911;68912;68913;68914;68915 69569;69570;69571;69572;69573;69574;69575;69576;69577;69578;69579 69575 11 HNLELTMAEMR EKLQWLHQQELSEMKHNLELTMAEMRQSLE SEMKHNLELTMAEMRQSLEQERDRLIAEVK K H N M R Q 1 1 1 0 0 0 2 0 1 0 2 0 2 0 0 0 1 0 0 0 0 0 11 0 1343.6326 Q9ULU4 Q9ULU4 983 993 ZMYND8 Protein kinase C-binding protein 1 no no 3 0.0019474 42.843 By MS/MS 1 1.0594 1.1587 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0594 1.1587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2198900 891990 1306900 0 0 0 0 0 0 2198900 891990 1306900 0 0 0 0 0 0 0 0 0 13535 4328 14085 68916 69580 69580 1 HNLEQDLVREELNKR ELECRRFKRRMLLGRHNLEQDLVREELNKR HNLEQDLVREELNKRQTQKDLEHAMLLRQH R H N K R Q 0 2 2 1 0 1 3 0 1 0 3 1 0 0 0 0 0 0 0 1 0 0 15 2 1891.9864 Q7L7X3 Q7L7X3 627 641 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 4 0.0033065 29.723 By MS/MS 1 0.85559 0.96453 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85559 0.96453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7433000 4082800 3350200 0 0 0 0 0 0 7433000 4082800 3350200 0 0 0 0 0 0 0 0 0 13536 3227 14086 68917 69581 69581 1 HNLITEMVALNPDFKPPADYKPPATR NTREFRTRKKLEEERHNLITEMVALNPDFK PDFKPPADYKPPATRVSDKVMIPQDEYPEI R H N T R V 3 1 2 2 0 0 1 0 1 1 2 2 1 1 5 0 2 0 1 1 0 0 26 2 2934.5062 Q15637 Q15637 110 135 SF1 Splicing factor 1 yes yes 4 1.3523E-10 64.152 By MS/MS 2 0.42228 0.48159 11.487 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42228 0.48159 11.487 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55896000 44262000 11634000 0 0 0 0 0 0 55896000 44262000 11634000 0 0 0 0 0 0 0 0 0 13537 2959 14087;14088 68918;68919 69582;69583;69584 69584 1629 3 HNLQDFINIK FCPEEGDWKNSNLDRHNLQDFINIKLNSAS SNLDRHNLQDFINIKLNSASILPEMEGLSE R H N I K L 0 0 2 1 0 1 0 0 1 2 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1240.6564 P46821;D6RA32;D6RA40 P46821 204 213 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.00056965 115.71 By MS/MS By MS/MS By MS/MS 1 1 3 1.2522 1.2392 14.171 5 Median 0.91133 0.9117 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1795 1.2594 NaN 1 0 Median 1.2605 1.2392 8.7373 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34354000 17393000 16961000 8521300 5163100 3358100 0 0 0 17461000 8636600 8824300 8371500 3593100 4778400 0 0 0 0 0 0 13538 2347 14089 68920;68921;68922;68923;68924 69585;69586;69587;69588 69587 4 HNNLDLVIIR ANVVHVKSLPGYMTRHNNLDLVIIREQTEG GYMTRHNNLDLVIIREQTEGEYSSLEHESA R H N I R E 0 1 2 1 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1205.6881 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 155 164 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2;3 9.1656E-06 153.05 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1.1577 1.0782 19.432 8 Median 1.1696 1.1654 9.4563 2 0 Median 1.1614 1.0119 7.3074 2 0 Median 1.136 1.1141 29.46 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1798 1.0665 NaN 1 0 Median 113310000 51808000 61506000 36898000 16922000 19977000 64767000 28599000 36168000 11157000 6095600 5061300 0 0 0 0 0 0 491600 191610 299990 13539 96 14090 68925;68926;68927;68928;68929;68930;68931;68932 69589;69590;69591;69592;69593;69594;69595 69595 7 HNNLYLVATSK SPILAHGGVRFMWIKHNNLYLVATSKKNAC MWIKHNNLYLVATSKKNACVSLVFSFLYKV K H N S K K 1 0 2 0 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 1 0 0 11 0 1258.667 E7ENJ6;Q9BXS5;K7EPJ8;K7EQ90;K7ER75;K7ENA7 E7ENJ6 62 72 AP1M1 AP-1 complex subunit mu-1 yes no 2 0.00017015 112.75 By MS/MS By MS/MS By MS/MS 1 1 1 0.43008 0.3854 66.181 3 Median 1.2002 1.1348 NaN 1 1 Median 0.40106 0.34084 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.43008 0.3854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16398000 8855500 7542400 4698000 2247800 2450200 6409600 3651000 2758600 0 0 0 5290300 2956800 2333600 0 0 0 0 0 0 13540 864 14091 68933;68934;68935 69596;69597;69598;69599 69598 4 HNNQQALSHSIEEGLK EYEAHQERVLARINKHNNQQALSHSIEEGL NNQQALSHSIEEGLKIQAMNRLQRGKKQQI K H N L K I 1 0 2 0 0 2 2 1 2 1 2 1 0 0 0 2 0 0 0 0 0 0 16 0 1803.8864 Q99496;X6RFN3 Q99496 134 149 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2;3;4 8.2704E-11 129.05 By MS/MS By MS/MS By matching 3 1 1 1.027 0.99323 11.852 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96364 0.99323 9.8459 3 0 Median 1.3644 1.162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0588 0.8911 NaN 1 0 Median 105240000 52229000 53012000 0 0 0 0 0 0 93697000 47347000 46351000 9925800 4008300 5917500 0 0 0 1618000 874080 743870 13541 3748 14092 68936;68937;68938;68939;68940 69600;69601;69602;69603;69604;69605;69606;69607;69608 69600 9 HNPTVTGHQEQTYLQK GQLNRYSSRNFPAERHNPTVTGHQEQTYLQ NPTVTGHQEQTYLQKETSTLQVEQNGDYGR R H N Q K E 0 0 1 0 0 3 1 1 2 0 1 1 0 0 1 0 3 0 1 1 0 0 16 0 1879.9177 Q71RC2;Q96J85;X6RLN4 Q71RC2 413 428 LARP4 La-related protein 4 yes no 3 0.00026692 39.685 By matching By MS/MS By matching 2 1 1 0.88656 0.83589 34.234 4 Median 1.1724 1.1877 27.991 2 0 Median 0.82085 0.71703 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79655 0.69242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9556900 5612700 3944200 2014000 970770 1043200 6821500 4170100 2651300 0 0 0 721430 471810 249620 0 0 0 0 0 0 13542 3211 14093 68941;68942;68943;68944 69609 69609 1 HNPVFGVMS HTKKDYEEIGPSICRHNPVFGVMS______ GPSICRHNPVFGVMS_______________ R H N M S - 0 0 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 2 0 0 9 0 986.46439 B4DXW1;P61158;Q9P1U1 B4DXW1 359 367 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 2 0.014857 58.604 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10375000 0 0 6515500 0 0 0 0 0 0 0 0 3859900 0 0 0 0 0 0 0 0 13543 607 14094 68945;68946 69610;69611 69610 2 HNQLPLVIEFTEQTAPK FEGEVTKENLLDFIKHNQLPLVIEFTEQTA QLPLVIEFTEQTAPKIFGGEIKTHILLFLP K H N P K I 1 0 1 0 0 2 2 0 1 1 2 1 0 1 2 0 2 0 0 1 0 0 17 0 1964.0367 P07237;H7BZ94;I3L398;I3L312;I3L4M2;I3NI03 P07237 231 247 P4HB Protein disulfide-isomerase yes no 2;3 2.8206E-11 106.36 By MS/MS By MS/MS By MS/MS 2 4 1 0.86918 0.80542 11.904 7 Median 0.805 0.76269 7.7101 2 0 Median 0.97517 0.82837 14.13 4 2 Median 0.8019 0.77629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90117000 49051000 41066000 31521000 16577000 14945000 35490000 20372000 15118000 23105000 12103000 11003000 0 0 0 0 0 0 0 0 0 13544 1883 14095 68947;68948;68949;68950;68951;68952;68953 69612;69613;69614;69615;69616;69617;69618;69619 69619 8 HNSEKPPEPVKPEVK DFSDFLSIVGCTKGRHNSEKPPEPVKPEVK HNSEKPPEPVKPEVKTTEKKELCELKPKFQ R H N V K T 0 0 1 0 0 0 3 0 1 0 0 3 0 0 4 1 0 0 0 2 0 0 15 2 1713.905 Q9UHD1;E9PPQ5;E9PIZ4;E9PSD5 Q9UHD1 64 78 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 3;4 0.00029514 44.252 By matching By MS/MS By matching By matching 1 4 2 1 0.55829 0.55283 29.232 8 Median 0.45257 0.53458 NaN 1 0 Median 0.50373 0.51164 43.023 4 0 Median 0.63074 0.67343 2.1703 2 0 Median 0.60428 0.56881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6829500 4022900 2806600 453200 246880 206320 6008200 3561300 2446900 260860 149810 111060 107200 64887 42318 0 0 0 0 0 0 13545 4275 14096 68954;68955;68956;68957;68958;68959;68960;68961 69620;69621;69622;69623;69624;69625;69626 69623 7 HNSILQLDPSIPGVFR AEHKKMVLWNDSVVRHNSILQLDPSIPGVF NSILQLDPSIPGVFRGPYPLGIDPIWNLAT R H N F R G 0 1 1 1 0 1 0 1 1 2 2 0 0 1 2 2 0 0 0 1 0 0 16 0 1791.9632 Q9Y487 Q9Y487 511 526 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 yes yes 3 0.057015 10.057 By matching By MS/MS 1 1 0.86161 0.79488 6.2101 2 Median 0.82681 0.83056 NaN 1 0 Median 0.89788 0.76073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5414300 3222500 2191700 1357000 805850 551130 4057300 2416700 1640600 0 0 0 0 0 0 0 0 0 0 0 0 13546 4440 14097 68962;68963 69627 69627 1 HNTAVSQLTK KMDVAQSELDIYLSRHNTAVSQLTKAKEAL IYLSRHNTAVSQLTKAKEALIAASETLKER R H N T K A 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 10 0 1097.5829 Q9NTJ3;E9PD53 Q9NTJ3 513 522 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.004061 54.539 By matching By MS/MS By matching By matching 1 2 1 1 1.1155 1.0321 7.9197 5 Median 1.1619 1.1244 NaN 1 0 Median 1.0789 0.94636 4.7736 2 0 Median 1.0006 1.066 NaN 1 0 Median 1.1424 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5639100 2618600 3020500 402410 179760 222650 3787300 1750100 2037100 962940 464740 498200 486460 223930 262530 0 0 0 0 0 0 13547 4108 14098 68964;68965;68966;68967;68968 69628;69629;69630;69631 69629 4 HNTPSLLEAALTQEASTPDSQVWPTAPDITR GPQLGLDGGPGDGDRHNTPSLLEAALTQEA TPDSQVWPTAPDITRETCSTLAESPRNGLQ R H N T R E 4 1 1 2 0 2 2 0 1 1 3 0 0 0 4 3 5 1 0 1 0 0 31 0 3345.6477 Q6P2E9 Q6P2E9 805 835 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.048042 9.381 By MS/MS 1 0.33192 0.35544 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33192 0.35544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625840 405810 220020 0 0 0 0 0 0 625840 405810 220020 0 0 0 0 0 0 0 0 0 13548 3155 14099 68969 69632 69632 1 HNVEVLGILSDDVETDTVAPGENLK GSICKGQQLVMMPNKHNVEVLGILSDDVET DDVETDTVAPGENLKIRLKGIEEEEILPGF K H N L K I 1 0 2 3 0 0 3 2 1 1 3 1 0 0 1 1 2 0 0 4 0 0 25 0 2663.329 P15170;H3BR35 P15170 339 363 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 3 5.8825E-14 62.237 By MS/MS By MS/MS By matching 1 3 1 0.83299 0.72855 26.736 5 Median 1.0389 1.008 NaN 1 0 Median 0.81524 0.68992 18.481 3 0 Median 0.88305 0.94208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14288000 7511600 6776700 3045700 1423800 1622000 10614000 5757000 4857300 628300 330920 297380 0 0 0 0 0 0 0 0 0 13549 2016 14100 68970;68971;68972;68973;68974 69633;69634;69635;69636;69637;69638 69636 6 HNVPDDGLPLQSQQLPQSGK REQKVYYSYSQISHKHNVPDDGLPLQSQQL DGLPLQSQQLPQSGKEAKAPGFALPELEHN K H N G K E 0 0 1 2 0 4 0 2 1 0 3 1 0 0 3 2 0 0 0 1 0 0 20 0 2157.0814 Q9UBB9;H0Y4U8 Q9UBB9 289 308 TFIP11 Tuftelin-interacting protein 11 yes no 3 0.00010095 37.09 By MS/MS By matching 1 1 0.51885 0.50785 26.501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55596 0.61251 NaN 1 0 Median 0.48422 0.42107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6394700 3617800 2776900 0 0 0 0 0 0 5514300 3026700 2487600 880400 591090 289310 0 0 0 0 0 0 13550 4235 14101 68975;68976 69639 69639 1 HNVQTLDIISR YYREVLPGEIVEISRHNVQTLDIISRSEGN EISRHNVQTLDIISRSEGNPVAFCIFEYVY R H N S R S 0 1 1 1 0 1 0 0 1 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1294.6993 Q06203 Q06203 261 271 PPAT Amidophosphoribosyltransferase yes yes 2 6.7507E-20 151.22 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13551 2722 14102 68977 69640 69640 1 HNWGQGFR ASMRRAADQNGGGGRHNWGQGFRLGDQ___ QNGGGGRHNWGQGFRLGDQ___________ R H N F R L 0 1 1 0 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 8 0 1000.4627 B4E1G1;E5RGY0;Q9BUN8 B4E1G1 140 147 DERL1 Derlin-1 yes no 2 0.0033247 99.139 By MS/MS By MS/MS 1 2 1.1678 0.93383 23.48 3 Median 1.3577 1.3488 NaN 1 0 Median 1.0964 0.90209 4.8906 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38559000 17829000 20730000 6763500 2806400 3957100 31796000 15023000 16773000 0 0 0 0 0 0 0 0 0 0 0 0 13552 613 14103 68978;68979;68980 69641;69642;69643;69644 69642 4 HNYEGTLR FKSQGYRDGPGNPLRHNYEGTLRDLLQFFK GPGNPLRHNYEGTLRDLLQFFKPRQPKKLY R H N L R D 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 8 0 988.47264 Q93009;H3BND8 Q93009 855 862 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.054439 33.797 By MS/MS 1 1.2019 1.0328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2019 1.0328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 567860 254240 313630 0 0 0 0 0 0 0 0 0 567860 254240 313630 0 0 0 0 0 0 13553 3574 14104 68981 69645 69645 1 HPAATAQLETAVR KLRLLGLRYQEYVTRHPAATAQLETAVRGF TRHPAATAQLETAVRGFSYLLAGRFADSHE R H P V R G 4 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 2 0 0 1 0 0 13 0 1363.7208 E9PQW0;E9PMM3;Q9Y5Y5;E9PMS3 E9PQW0 18 30 PEX16 Peroxisomal membrane protein PEX16 yes no 2;3 5.9737E-05 80.69 By MS/MS By MS/MS By MS/MS 2 2 1 1.1212 0.95697 31.203 5 Median 1.0765 1.0287 10.222 2 0 Median 1.1604 0.97409 4.8082 2 0 Median 0.51343 0.50538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15296000 7783000 7513100 7420400 3470200 3950200 4998200 2126100 2872100 2877500 2186700 690810 0 0 0 0 0 0 0 0 0 13554 968 14105 68982;68983;68984;68985;68986 69646;69647;69648;69649;69650;69651 69651 6 HPAKPDPSGECNPDLR TKTPSSDVLVFDYTKHPAKPDPSGECNPDL PAKPDPSGECNPDLRLRGHQKEGYGLSWNS K H P L R L 1 1 1 2 1 0 1 1 1 0 1 1 0 0 4 1 0 0 0 0 0 0 16 1 1788.8213 Q16576;E9PC52;Q5JP01 Q16576 156 171 RBBP7 Histone-binding protein RBBP7 yes no 3 0.0034914 42.813 By MS/MS 2 0.85248 0.77875 6.4793 2 Median NaN NaN NaN 0 0 Median 0.85248 0.77875 6.4793 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5710100 2897900 2812200 0 0 0 5710100 2897900 2812200 0 0 0 0 0 0 0 0 0 0 0 0 13555 2990 14106 68987;68988 69652;69653;69654 69654 3 HPAPEDPDWIKR SLIYRRCLLHDSIARHPAPEDPDWIKRLLQ IARHPAPEDPDWIKRLLQSPCPFCDSPVF_ R H P K R L 1 1 0 2 0 0 1 0 1 1 0 1 0 0 3 0 0 1 0 0 0 0 12 1 1459.7208 Q9UKN8 Q9UKN8 797 808 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 1.0881E-06 103.21 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.8204 0.8128 8.8112 5 Median 0.82483 0.82951 2.8792 2 0 Median 0.85422 0.8541 NaN 1 0 Median 0.63062 0.71499 NaN 1 0 Median 0.75809 0.71657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18261000 10132000 8128800 3730700 1804500 1926200 2161900 1170300 991620 9816100 5750500 4065700 2552300 1407000 1145300 0 0 0 0 0 0 13556 4314 14107 68989;68990;68991;68992;68993 69655;69656;69657;69658;69659 69656 5 HPASEAEIQPQTQVTLR SFNIKWIEAGPVVLKHPASEAEIQPQTQVT ASEAEIQPQTQVTLRCHIDGHPRPTYQWFR K H P L R C 2 1 0 0 0 3 2 0 1 1 1 0 0 0 2 1 2 0 0 1 0 0 17 0 1903.9752 Q13308;Q86X91;F8WDG7 Q13308 133 149 PTK7 Inactive tyrosine-protein kinase 7 yes no 3 0.0044297 38.093 By MS/MS By MS/MS 2 2 0.71474 0.67206 76.973 4 Median 0.31508 0.31804 88.658 2 1 Median 0.96119 0.84973 16.024 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12708000 8270900 4437300 9217200 6482400 2734900 3491000 1788600 1702400 0 0 0 0 0 0 0 0 0 0 0 0 13557 2804 14108 68994;68995;68996;68997 69660;69661 69660 2 HPDADSLYVEK SRLDIRVGKIITVEKHPDADSLYVEKIDVG TVEKHPDADSLYVEKIDVGEAEPRTVVSGL K H P E K I 1 0 0 2 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 11 0 1272.5986 P54577 P54577 381 391 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 2 0.0001139 138.08 By MS/MS By matching By MS/MS 1 1 1 1.0661 0.89236 22.143 3 Median NaN NaN NaN 0 0 Median 1.0661 0.89236 NaN 1 0 Median 1.2154 1.2359 NaN 1 0 Median 0.94945 0.80987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16274000 7774300 8499700 0 0 0 12918000 6147400 6770600 1268000 590480 677470 2088100 1036400 1051600 0 0 0 0 0 0 13558 2482 14109 68998;68999;69000 69662;69663;69664 69662 3 HPDASVNFSEFSK YAFFVQTCREEHKKKHPDASVNFSEFSKKC KKHPDASVNFSEFSKKCSERWKTMSAKEKG K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 P09429;Q5T7C4 P09429 31 43 HMGB1 High mobility group protein B1 yes no 2;3 1.4945E-40 210.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 6 5 4 0.97715 0.86035 15.042 16 Median 0.98821 0.90902 10.917 2 1 Median 0.77662 0.65714 NaN 1 0 Median 0.9218 0.88117 14.678 5 1 Median 1.0345 0.86035 10.281 4 2 Median NaN NaN NaN 0 0 Median 1.0016 0.82311 18.106 4 0 Median 421550000 203630000 217930000 26329000 13873000 12456000 2507000 1321300 1185700 173470000 82800000 90669000 200090000 96303000 103780000 0 0 0 19162000 9328000 9834100 13559 1915 14110 69001;69002;69003;69004;69005;69006;69007;69008;69009;69010;69011;69012;69013;69014;69015;69016;69017;69018;69019 69665;69666;69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681;69682;69683;69684;69685;69686;69687;69688;69689;69690 69668 25 HPDASVNFSEFSKK YAFFVQTCREEHKKKHPDASVNFSEFSKKC KHPDASVNFSEFSKKCSERWKTMSAKEKGK K H P K K C 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P09429;Q5T7C4 P09429 31 44 HMGB1 High mobility group protein B1 yes no 2;3 8.724E-08 145.52 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 0.96138 0.90486 4.6339 8 Median 0.87581 0.86586 1.8524 2 0 Median 1.0221 0.93108 NaN 1 0 Median 0.90115 0.89141 2.2644 2 0 Median 1.0294 0.91262 5.2752 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 825290000 417770000 407530000 123390000 64879000 58512000 27274000 13400000 13874000 311950000 162510000 149440000 362680000 176980000 185700000 0 0 0 0 0 0 13560 1915 14111 69020;69021;69022;69023;69024;69025;69026;69027 69691;69692;69693;69694;69695;69696;69697;69698;69699;69700 69697 10 HPDGVASVSFR CSKFGQIRKLLLFDRHPDGVASVSFRDPEE LFDRHPDGVASVSFRDPEEADYCIQTLDGR R H P F R D 1 1 0 1 0 0 0 1 1 0 0 0 0 1 1 2 0 0 0 2 0 0 11 0 1170.5782 O43719 O43719 310 320 HTATSF1 HIV Tat-specific factor 1 yes yes 2 0.014477 56.258 By MS/MS 1 1.2562 1.0667 NaN 1 Median NaN NaN NaN 0 0 Median 1.2562 1.0667 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3805700 1502500 2303200 0 0 0 3805700 1502500 2303200 0 0 0 0 0 0 0 0 0 0 0 0 13561 1586 14112 69028 69701 69701 1 HPDSHQLFIGNLPHEVDK EAGEQGDIEPRRMVRHPDSHQLFIGNLPHE SHQLFIGNLPHEVDKSELKDFFQSYGNVVE R H P D K S 0 0 1 2 0 1 1 1 3 1 2 1 0 1 2 1 0 0 0 1 0 0 18 0 2082.0283 Q13283 Q13283 336 353 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3;4 2.1207E-06 57.936 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 0.77928 0.67427 24.56 8 Median 0.9084 0.86147 NaN 1 0 Median 0.79204 0.66739 19.775 3 2 Median 0.76672 0.74418 NaN 1 0 Median 0.74035 0.63049 33.13 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45382000 24368000 21014000 7895000 4436200 3458900 16580000 8552200 8028100 14327000 7692900 6634400 6579200 3686300 2892900 0 0 0 0 0 0 13562 2803 14113 69029;69030;69031;69032;69033;69034;69035;69036 69702;69703;69704;69705;69706;69707;69708;69709;69710 69704 9 HPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELR EAGEQGDIEPRRMVRHPDSHQLFIGNLPHE LKDFFQSYGNVVELRINSGGKLPNFGFVVF R H P L R I 0 1 2 3 0 2 3 2 3 1 4 2 0 3 2 3 0 0 1 3 0 0 35 2 4094.0286 Q13283 Q13283 336 370 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 5 2.1263E-06 37.763 By matching By MS/MS 1 1 0.83066 0.84295 19.047 2 Median 0.89093 0.96448 NaN 1 0 Median 0.77446 0.73673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6324000 3321700 3002300 1741100 830760 910390 4582800 2491000 2091900 0 0 0 0 0 0 0 0 0 0 0 0 13563 2803 14114 69037;69038 69711 69711 1 HPDSSVNFAEFSK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 P26583;D6R9A6 P26583 31 43 HMGB2 High mobility group protein B2 yes no 2;3 3.1296E-95 234.3 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 3 2 2 1 0.88553 0.82416 13.097 10 Median 0.70541 0.65677 NaN 1 0 Median 0.71398 0.61028 NaN 1 0 Median 0.89534 0.83965 7.5464 3 0 Median 1.0127 0.84115 1.7508 2 1 Median 0.75988 0.77708 8.6698 2 0 Median 0.91443 0.76968 NaN 1 0 Median 315350000 155570000 159770000 7595200 4114800 3480400 688190 277280 410910 241470000 118300000 123170000 60561000 30278000 30283000 2934500 1640100 1294500 2100800 964800 1136000 13564 2146 14115 69039;69040;69041;69042;69043;69044;69045;69046;69047;69048;69049 69712;69713;69714;69715;69716;69717;69718;69719;69720;69721 69713 10 HPDSSVNFAEFSKK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KHPDSSVNFAEFSKKCSERWKTMSAKEKSK K H P K K C 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P26583;D6R9A6 P26583 31 44 HMGB2 High mobility group protein B2 yes no 2;3 7.5861E-08 103.46 By MS/MS By matching By MS/MS By MS/MS 1 1 3 5 0.9009 0.87831 10.954 10 Median 0.86565 0.87937 NaN 1 0 Median 0.91264 0.83525 NaN 1 0 Median 0.88743 0.87725 8.8635 3 0 Median 1.0905 0.98429 13.678 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 446980000 221560000 225430000 17692000 8375600 9316700 2582900 1289000 1293900 273460000 140470000 132980000 153250000 71417000 81835000 0 0 0 0 0 0 13565 2146 14116 69050;69051;69052;69053;69054;69055;69056;69057;69058;69059 69722;69723;69724;69725;69726;69727;69728;69729;69730;69731;69732;69733;69734;69735 69726 14 HPDVEVDGFSELR WYHFSCFWKVGHSIRHPDVEVDGFSELRWD IRHPDVEVDGFSELRWDDQQKVKKTAEAGG R H P L R W 0 1 0 2 0 0 2 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 13 0 1498.7052 P09874;Q5VX84;Q5VX85 P09874 66 78 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2;3 1.9721E-53 233.84 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 14 12 1 8 1.0401 0.9588 25.881 38 Median 1.0152 0.98028 36.714 2 0 Median 0.90555 0.79999 NaN 1 0 Median 0.91737 0.98757 24.53 14 3 Median 1.143 0.96834 18.845 12 0 Median 0.94972 1.0044 NaN 1 0 Median 1.0541 0.85587 33.326 8 0 Median 754370000 384550000 369820000 12825000 7390400 5434900 843140 443900 399240 564610000 293940000 270670000 162750000 76016000 86736000 3144000 1922200 1221800 10193000 4837900 5355300 13566 1922 14117 69060;69061;69062;69063;69064;69065;69066;69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084;69085;69086;69087;69088;69089;69090;69091;69092;69093;69094;69095;69096;69097 69736;69737;69738;69739;69740;69741;69742;69743;69744;69745;69746;69747;69748;69749;69750;69751;69752;69753;69754;69755;69756;69757;69758;69759;69760;69761;69762;69763;69764;69765;69766;69767;69768;69769;69770;69771;69772;69773;69774;69775;69776;69777;69778;69779;69780;69781;69782;69783;69784;69785;69786;69787;69788 69743 53 HPDYAILAAR LDTLAAETAATLTTKHPDYAILAARIAVSN TLTTKHPDYAILAARIAVSNLHKETKKVFS K H P A R I 3 1 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1125.5931 P23921 P23921 71 80 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.00035707 95.531 By MS/MS By MS/MS 1 1 1.0267 0.92823 5.653 2 Median 0.94328 0.89186 NaN 1 0 Median 1.1174 0.96609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50866000 24053000 26813000 35660000 17095000 18566000 15206000 6957900 8247800 0 0 0 0 0 0 0 0 0 0 0 0 13567 2121 14118 69098;69099 69789;69790;69791;69792;69793;69794 69791 6 HPEAEMAQNSVR ITEPAVCALRHLTSRHPEAEMAQNSVRLNY TSRHPEAEMAQNSVRLNYGIPAIVKLLNQP R H P V R L 2 1 1 0 0 1 2 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 12 0 1367.6252 P14923 P14923 466 477 JUP Junction plakoglobin yes yes 2 0.0052277 41.54 By matching By MS/MS By matching By matching 1 1 1 1 0.66574 0.59111 37.204 4 Median 0.35903 0.35915 NaN 1 0 Median 0.80661 0.7302 NaN 1 0 Median 0.76831 0.79505 NaN 1 0 Median 0.57687 0.47851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2278000 1313200 964770 323200 241780 81418 929480 549900 379580 858940 419430 439510 166340 102080 64262 0 0 0 0 0 0 13568 2013 14119 69100;69101;69102;69103 69795;69796 69795 2 HPEELSLLK VFKAVSDICKTFNIRHPEELSLLKKPRDPT KTFNIRHPEELSLLKKPRDPTKKKKKKLDD R H P L K K 0 0 0 0 0 0 2 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 9 0 1064.5866 H0YJ34;Q96AC1;G3V3J0;G3V5R2;G3V281 H0YJ34 76 84 FERMT2 Fermitin family homolog 2 yes no 2 0.00041855 130.56 By MS/MS By MS/MS By matching By matching 2 3 1 1 0.89691 0.7981 19.137 7 Median 0.85354 0.85997 26.659 2 1 Median 0.97332 0.86226 5.0326 3 0 Median 0.57442 0.62333 NaN 1 0 Median 0.70977 0.61688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29926000 15873000 14053000 7822400 3891300 3931000 18274000 9459700 8813900 3180500 2200700 979770 649340 321320 328020 0 0 0 0 0 0 13569 1184 14120 69104;69105;69106;69107;69108;69109;69110 69797;69798;69799 69798 3 HPELADKNVPNLHVMK KEGVMVAKKDVHMPKHPELADKNVPNLHVM PELADKNVPNLHVMKAMQSLKSRGYVKEQF K H P M K A 1 0 2 1 0 0 1 0 2 0 2 2 1 0 2 0 0 0 0 2 0 0 16 1 1840.9618 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;Q9NQ39;A0A1W2PQS6;S4R435 P46783 32 47 RPS10;RPS10P5;RPS10-NUDT3 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like no no 3;4 2.8228E-05 72.321 By MS/MS By MS/MS By matching 2 2 1 0.75136 0.72143 6.6383 5 Median 0.72496 0.72466 5.0171 2 0 Median 0.81866 0.7238 12.287 2 0 Median NaN NaN NaN 0 0 Median 0.80126 0.72143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24206000 12346000 11861000 16537000 8183500 8353400 4527800 2159400 2368400 0 0 0 3141600 2002600 1138900 0 0 0 0 0 0 13570 2346;345 14121 69111;69112;69113;69114;69115 69800;69801;69802 69802 3 HPELFEALGIAQPK KQIKEIKEVIELPVKHPELFEALGIAQPKG KHPELFEALGIAQPKGVLLYGPPGTGKTLL K H P P K G 2 0 0 0 0 1 2 1 1 1 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1548.83 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRW1;J3QRR3;J3QSE0 P62195 171 184 PSMC5 26S protease regulatory subunit 8 yes no 3 0.0046378 29.328 By MS/MS 2 0.61136 0.52448 53.929 2 Median NaN NaN NaN 0 0 Median 0.61136 0.52448 53.929 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10249000 5689500 4559300 0 0 0 10249000 5689500 4559300 0 0 0 0 0 0 0 0 0 0 0 0 13571 2572 14122 69116;69117 69803 69803 1 HPELNISEEGITK QRKEYEEIMRDYIQKHPELNISEEGITKST QKHPELNISEEGITKSTLTKAERQLKDKFD K H P T K S 0 0 1 0 0 0 3 1 1 2 1 1 0 0 1 1 1 0 0 0 0 0 13 0 1465.7413 P17480;E9PKP7 P17480 267 279 UBTF Nucleolar transcription factor 1 yes no 2;3 6.8393E-23 203.61 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1.0282 0.9354 12.231 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82941 0.89736 5.7472 2 0 Median 1.351 1.1524 21.865 3 0 Median 0.90088 0.91368 3.4456 2 0 Median 1.1397 0.95789 3.4402 3 0 Median 142210000 69579000 72634000 0 0 0 0 0 0 54154000 27020000 27134000 4955400 2044400 2911000 70093000 34675000 35418000 13010000 5840000 7170200 13572 2040 14123 69118;69119;69120;69121;69122;69123;69124;69125;69126;69127 69804;69805;69806;69807;69808;69809;69810;69811;69812;69813;69814;69815;69816 69808 12 HPENYDLATLK SAVVVQGLPEGVAFKHPENYDLATLKWILE VAFKHPENYDLATLKWILENKAGISFIIKR K H P L K W 1 0 1 1 0 0 1 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1299.6459 P78347;A0A494C1K3 P78347 161 171 GTF2I General transcription factor II-I yes no 2 6.6994E-05 152.07 By MS/MS By MS/MS By MS/MS 1 1 1 0.91626 0.7874 84.78 3 Median NaN NaN NaN 0 0 Median 3.8831 3.2967 NaN 1 0 Median 0.6894 0.73384 NaN 1 0 Median 0.91626 0.7874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41236000 21776000 19460000 0 0 0 6400300 2710500 3689800 31251000 17228000 14023000 3585000 1837700 1747300 0 0 0 0 0 0 13573 2642 14124 69128;69129;69130 69817;69818;69819;69820;69821;69822 69818 6 HPESNTAGMDIFAK EEVLCPPKYLKLSPKHPESNTAGMDIFAKF KHPESNTAGMDIFAKFSAYIKNSRPEANEA K H P A K F 2 0 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 0 0 14 0 1516.698 Q9Y696 Q9Y696 111 124 CLIC4 Chloride intracellular channel protein 4 yes yes 2;3 1.8163E-16 186.81 By MS/MS By MS/MS 3 3 0.9501 0.85397 13.718 6 Median 0.92387 0.85402 11.284 3 0 Median 0.97708 0.81995 18.276 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85025000 43671000 41354000 64771000 33149000 31622000 20254000 10522000 9732200 0 0 0 0 0 0 0 0 0 0 0 0 13574 4483 14125 69131;69132;69133;69134;69135;69136 69823;69824;69825;69826;69827;69828;69829;69830 69824 8 HPEVYHHLGVVPPR DMTLKEVCKMLIHMRHPEVYHHLGVVPPRG RHPEVYHHLGVVPPRGVLLHGPPGCGKTLL R H P P R G 0 1 0 0 0 0 1 1 3 0 1 0 0 0 3 0 0 0 1 3 0 0 14 0 1635.8634 O15381 O15381 286 299 NVL Nuclear valosin-containing protein-like yes yes 4 0.0074519 40.725 By MS/MS 1 0.7893 0.79697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7893 0.79697 NaN 1 1 Median NaN NaN NaN 0 0 Median 1348000 790470 557510 0 0 0 0 0 0 0 0 0 0 0 0 1348000 790470 557510 0 0 0 13575 1542 14126 69137 69831 69831 1 HPEYAVSVLLR KDAFLGSFLYEYSRRHPEYAVSVLLRLAKE YSRRHPEYAVSVLLRLAKEYEATLEECCAK R H P L R L 1 1 0 0 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 11 0 1282.7034 CON__P02769 CON__P02769 361 371 yes yes 2;3 0.00043761 90.906 By MS/MS By MS/MS 2 1 0.033109 0.03111 130.12 3 Median 0.016852 0.015965 94.344 2 2 Median NaN NaN NaN 0 0 Median 0.10705 0.11054 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59645000 56609000 3036000 54894000 53054000 1840100 0 0 0 4750500 3554600 1195900 0 0 0 0 0 0 0 0 0 + 13576 746 14127 69138;69139;69140 69832;69833;69834;69835;69836 69834 5 HPFAQAVGR ESYSAEYAVFETGARHPFAQAVGRNIANPT FETGARHPFAQAVGRNIANPTAMLLSASNM R H P G R N 2 1 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 9 0 981.51445 A0A087WZN1;O43837;A0A087X2E5;A0A0D9SG66 A0A087WZN1 309 317 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.010839 47.849 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.127 0.98752 13.781 4 Median 0.9603 0.96094 NaN 1 0 Median 1.1399 0.99464 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1143 0.98046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5099 1.2872 NaN 1 0 Median 14573000 6907400 7665800 2752100 1408200 1343900 9910100 4630800 5279300 0 0 0 730700 331100 399600 0 0 0 1180300 537350 642980 13577 96 14128 69141;69142;69143;69144 69837;69838;69839;69840;69841 69841 5 HPFIVNHPK CRVTRDGSAFEDGLRHPFIVNHPKVGRVSI FEDGLRHPFIVNHPKVGRVSIYDSKRQSGK R H P P K V 0 0 1 0 0 0 0 0 2 1 0 1 0 1 2 0 0 0 0 1 0 0 9 0 1087.5927 P55265;A0A3B3IRQ9 P55265 1097 1105 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.05311 30.185 By matching By matching By MS/MS 1 1 3 0.80746 0.84008 13.942 5 Median NaN NaN NaN 0 0 Median 1.283 1.0976 NaN 1 0 Median 0.74107 0.77314 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80746 0.84008 4.969 3 0 Median NaN NaN NaN 0 0 Median 3101100 1651600 1449500 0 0 0 165240 73433 91804 591520 333180 258330 0 0 0 2344300 1245000 1099300 0 0 0 13578 2498 14129 69145;69146;69147;69148;69149 69842;69843 69842 2 HPFPGPGLAIR ILGRELGLPEELVSRHPFPGPGLAIRVICA LVSRHPFPGPGLAIRVICAEEPYICKDFPE R H P I R V 1 1 0 0 0 0 0 2 1 1 1 0 0 1 3 0 0 0 0 0 0 0 11 0 1160.6455 P49915 P49915 436 446 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.00013514 86.833 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.80513 0.68311 27.77 6 Median 0.88557 0.83841 42.165 2 1 Median 0.65408 0.56554 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80513 0.68311 11.591 2 0 Median NaN NaN NaN 0 0 Median 1.1943 0.9817 NaN 1 0 Median 69990000 40765000 29225000 49826000 28931000 20895000 14993000 9102000 5890700 0 0 0 4534000 2498200 2035800 0 0 0 637040 233570 403470 13579 2405 14130 69150;69151;69152;69153;69154;69155 69844;69845;69846;69847;69848;69849;69850 69844 7 HPFSFPLENQAR FFVTKKPTSQIPETKHPFSFPLENQAREAV ETKHPFSFPLENQAREAVSSAFFSLLQTLS K H P A R E 1 1 1 0 0 1 1 0 1 0 1 0 0 2 2 1 0 0 0 0 0 0 12 0 1441.7102 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 499 510 MYBBP1A Myb-binding protein 1A yes no 2;3 9.7612E-05 125.48 By matching By MS/MS By matching By MS/MS 1 2 2 2 0.83417 0.86742 11.49 6 Median NaN NaN NaN 0 0 Median 0.83689 0.72544 NaN 1 0 Median 0.81839 0.89951 2.997 2 0 Median 0.89308 0.78244 16.332 2 0 Median 0.83254 0.85674 NaN 1 1 Median NaN NaN NaN 0 0 Median 71619000 39010000 32609000 0 0 0 1340900 671490 669440 59795000 32357000 27438000 975880 479650 496230 9506900 5502200 4004800 0 0 0 13580 3789 14131 69156;69157;69158;69159;69160;69161;69162 69851;69852;69853;69854;69855;69856;69857;69858;69859 69857 9 HPGASDRPQPTAMNSIVMETGNTK KADANRTAPSGSEYRHPGASDRPQPTAMNS PTAMNSIVMETGNTKNSALMAKKAPTMPKP R H P T K N 2 1 2 1 0 1 1 2 1 1 0 1 2 0 3 2 3 0 0 1 0 0 24 1 2538.1955 O43660;D6RA26 O43660 150 173 PLRG1 Pleiotropic regulator 1 yes no 3;4 4.8706E-12 56.29 By MS/MS By matching 2 2 0.68293 0.70112 16.747 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55123 0.61811 10.39 2 0 Median 0.84647 0.79431 10.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27922000 17621000 10301000 0 0 0 0 0 0 21839000 14545000 7293900 6083400 3076100 3007400 0 0 0 0 0 0 13581 1580 14132 69163;69164;69165;69166 69860;69861;69862 69860 3 HPGGGDYEEL DELEAFLGGGAPGGRHPGGGDYEEL_____ APGGRHPGGGDYEEL_______________ R H P E L - 0 0 0 1 0 0 2 3 1 0 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1072.4462 Q3YEC7 Q3YEC7 720 729 RABL6 Rab-like protein 6 yes yes 2 0.026276 49.358 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3007100 0 0 0 0 0 3007100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13582 3014 14133 69167 69863 69863 1 HPGSFDVVHVK GANLGRIGVITNRERHPGSFDVVHVKDANG NRERHPGSFDVVHVKDANGNSFATRLSNIF R H P V K D 0 0 0 1 0 0 0 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 11 0 1220.6302 P62701 P62701 201 211 RPS4X 40S ribosomal protein S4, X isoform no no 2;3 3.89E-05 115.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 1 2 2 4 1.0542 0.90211 17.839 19 Median 1.0485 0.87479 13.25 4 0 Linear 1.063 0.89003 19.472 6 0 Median 1.0158 0.95224 NaN 1 0 Median 1.3788 1.152 8.4661 2 0 Median 0.96745 0.99314 10.555 2 0 Median 1.2658 1.039 17.226 4 0 Median 356780000 174910000 181870000 176500000 90626000 85874000 81957000 38985000 42972000 18138000 8191400 9946400 8658100 3597400 5060700 53856000 26074000 27782000 17667000 7433500 10234000 13583 2593 14134 69168;69169;69170;69171;69172;69173;69174;69175;69176;69177;69178;69179;69180;69181;69182;69183;69184;69185;69186 69864;69865;69866;69867;69868;69869;69870;69871;69872;69873;69874;69875;69876;69877;69878;69879;69880;69881;69882;69883;69884;69885;69886;69887;69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898 69881 35 HPIGVLLNAITELQK FSNYLKKYHNTICGRHPIGVLLNAITELQK HPIGVLLNAITELQKNGMNMSFSFLNYAQS R H P Q K N 1 0 1 0 0 1 1 1 1 2 3 1 0 0 1 0 1 0 0 1 0 0 15 0 1644.9563 Q9Y316 Q9Y316 247 261 MEMO1 Protein MEMO1 yes yes 2 0.00036566 59.542 By MS/MS 1 0.90657 0.76398 NaN 1 Median NaN NaN NaN 0 0 Median 0.90657 0.76398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2367900 1290800 1077100 0 0 0 2367900 1290800 1077100 0 0 0 0 0 0 0 0 0 0 0 0 13584 4403 14135 69187 69899 69899 1 HPLEYLR GNCDAKDFPIKYKERHPLEYLRQYPHFRCR FPIKYKERHPLEYLRQYPHFRCRTNVLGSI R H P L R Q 0 1 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 926.4974 Q96I59;H0YEL9;E9PRK2 Q96I59 134 140 NARS2 Probable asparagine--tRNA ligase, mitochondrial yes no 2 0.047302 41.502 By MS/MS By MS/MS 1 1 1.0513 0.97118 8.3193 2 Median 0.92812 0.9157 NaN 1 0 Median 1.1907 1.03 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3017800 1346200 1671600 1134100 586210 547940 1883700 760040 1123600 0 0 0 0 0 0 0 0 0 0 0 0 13585 3676 14136 69188;69189 69900;69901 69901 2 HPLLHIQK KGTINFLHADCDKFRHPLLHIQKTPADCPV ADCDKFRHPLLHIQKTPADCPVIAIDSFRH R H P Q K T 0 0 0 0 0 1 0 0 2 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 984.58688 Q9BS26 Q9BS26 306 313 ERP44 Endoplasmic reticulum resident protein 44 yes yes 2 0.0032511 99.919 By matching By MS/MS 2 1 1.115 0.99817 16.639 3 Median 1.1685 1.14 18.785 2 0 Median 1.115 0.95833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3914200 1924500 1989800 410240 188960 221280 3504000 1735500 1768500 0 0 0 0 0 0 0 0 0 0 0 0 13586 3809 14137 69190;69191;69192 69902 69902 1 HPLSVMLDLK LGVQLDDKRKEMLKRHPLSVMLDLKCKDDS EMLKRHPLSVMLDLKCKDDSVLHLTFYYLM R H P L K C 0 0 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 0 0 1 0 0 10 0 1151.6373 Q13769;H7C072 Q13769 344 353 THOC5 THO complex subunit 5 homolog yes no 2 0.046679 47.082 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13587 2837 14138 69193 69903 69903 1 HPMDLSTVKR DAEALELHDYHDIIKHPMDLSTVKRKMDGR HDIIKHPMDLSTVKRKMDGREYPDAQGFAA K H P K R K 0 1 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 10 1 1182.6179 Q15059;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2 Q15059 354 363 BRD3;BRD2 Bromodomain-containing protein 3;Bromodomain-containing protein 2 no no 3 0.013186 41.399 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 506680 0 506680 0 0 0 0 0 0 0 0 0 0 0 0 506680 0 506680 0 0 0 13588 2923;279 14139 69194 69904 69904 1 HPNFLVVEK TGFLLGGIGELNKNRHPNFLVVEKDTTINE ELNKNRHPNFLVVEKDTTINEIEDTFRQFL R H P E K D 0 0 1 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 2 0 0 9 0 1081.592 Q16864 Q16864 33 41 ATP6V1F V-type proton ATPase subunit F yes yes 2 0.00046934 123.35 By matching By MS/MS By matching 1 1 1 1.0618 0.87525 19.823 3 Median 0.8619 0.79924 NaN 1 0 Median 1.0618 0.87525 NaN 1 0 Median 1.1761 1.1683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11235000 5329700 5905200 2099700 1041100 1058500 6942900 3129600 3813300 2192400 1159000 1033400 0 0 0 0 0 0 0 0 0 13589 3000 14140 69195;69196;69197 69905;69906 69906 2 HPNIVSLQDVLMQDSR PSTAIREISLLKELRHPNIVSLQDVLMQDS PNIVSLQDVLMQDSRLYLIFEFLSMDLKKY R H P S R L 0 1 1 2 0 2 0 0 1 1 2 0 1 0 1 2 0 0 0 2 0 0 16 0 1850.9309 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 60 75 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2;3 1.7155E-05 84.289 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 0.83669 0.68919 56.965 8 Median NaN NaN NaN 0 0 Median 0.80243 0.66739 NaN 1 0 Median 1.0396 1.0185 7.7396 2 0 Median 0.72821 0.61004 15.722 2 1 Median NaN NaN NaN 0 0 Median 0.8598 0.72694 83.334 3 0 Plateau 26036000 13264000 12772000 0 0 0 8044900 4372100 3672800 13567000 6525700 7041700 2048200 1149800 898490 0 0 0 2375500 1216100 1159500 13590 1871 14141 69198;69199;69200;69201;69202;69203;69204;69205 69907;69908;69909;69910;69911;69912;69913;69914;69915 69909 9 HPNQQHVVATGGQDGMLSIWDVR LSLTGDRVPLHCVDRHPNQQHVVATGGQDG ATGGQDGMLSIWDVRQGTMPVSLLKAHEAE R H P V R Q 1 1 1 2 0 3 0 3 2 1 1 0 1 0 1 1 1 1 0 3 0 0 23 0 2544.2292 Q8NFH3 Q8NFH3 226 248 NUP43 Nucleoporin Nup43 yes yes 3;4 1.743E-23 99.366 By MS/MS By matching 3 1 1.0029 0.96376 16.753 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88586 0.97032 19.38 3 1 Median 1.1355 0.95723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64171000 31669000 32503000 0 0 0 0 0 0 63923000 31559000 32364000 248470 109660 138810 0 0 0 0 0 0 13591 3435 14142;14143 69206;69207;69208;69209 69916;69917;69918;69919 69919 1726 4 HPPAPAEPSSDLASK EWLQDLKEKGPTLLKHPPAPAEPSSDLASK HPPAPAEPSSDLASKLREAEETQSTLQAEC K H P S K L 3 0 0 1 0 0 1 0 1 0 1 1 0 0 4 3 0 0 0 0 0 0 15 0 1502.7365 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1099 1113 RRBP1 Ribosome-binding protein 1 yes no 2;3 0.00027752 69.451 By matching By MS/MS By MS/MS 1 1 2 0.85095 0.72654 13.565 4 Median 0.55726 0.56318 NaN 1 0 Median 0.828 0.71979 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88864 0.74486 2.2001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6377100 3784700 2592400 1106900 654340 452570 3047500 1974700 1072800 0 0 0 2222700 1155600 1067100 0 0 0 0 0 0 13592 4222 14144 69210;69211;69212;69213 69920;69921;69922;69923;69924;69925 69920 6 HPQAHVDIYEK GSGPAGFYTAQHLLKHPQAHVDIYEKQPVP HLLKHPQAHVDIYEKQPVPFGLVRFGVAPD K H P E K Q 1 0 0 1 0 1 1 0 2 1 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1335.6571 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTR6;A0A0C4DGN7 P22570 60 70 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 0.0017944 54.772 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.6964 1.4474 25.33 5 Median 1.3666 1.3391 NaN 1 0 Median 1.6964 1.4474 NaN 1 1 Median 0.89424 0.87148 NaN 1 0 Median 1.7746 1.5934 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.9002 1.6183 NaN 1 0 Median 20673000 8890900 11782000 1374200 602550 771680 3444100 1178500 2265700 7677500 4190400 3487200 7484400 2664100 4820300 0 0 0 692480 255370 437110 13593 2102 14145 69214;69215;69216;69217;69218 69926;69927;69928 69926 3 HPQLLYESK NGEEVAVKLESQKARHPQLLYESKLYKILQ ESQKARHPQLLYESKLYKILQGGVGIPHIR R H P S K L 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 9 0 1113.5819 U3KPX3;A0A590UJ43;P48729;Q8N752;A0A590UJQ7;E5RG27;D6RGE5;A0A590UK94 U3KPX3 54 62 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.0021228 74.173 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 0.96562 0.84564 12.609 9 Median 0.71099 0.69687 6.6747 2 0 Median 1.0821 0.91876 7.0111 2 0 Median 0.96562 0.92387 NaN 1 0 Median 1.0309 0.87169 4.2911 2 0 Median 0.75115 0.74389 NaN 1 0 Median 0.90394 0.75846 NaN 1 0 Median 17655000 9434500 8220500 2375200 1409600 965560 3584300 1860600 1723800 3783500 1907200 1876300 4540200 2406600 2133600 2570000 1460500 1109500 801920 390120 411800 13594 481 14146 69219;69220;69221;69222;69223;69224;69225;69226;69227 69929;69930;69931;69932;69933;69934 69932 6 HPQPFLR IKLNQWCNVVRWEFKHPQPFLRTREFLWQE NVVRWEFKHPQPFLRTREFLWQEGHSAFAT K H P L R T 0 1 0 0 0 1 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 0 7 0 893.48717 P07814 P07814 1157 1163 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.023603 56.51 By MS/MS By MS/MS 1 1 0.88501 0.80743 6.3273 2 Median 0.86669 0.84437 NaN 1 0 Median 0.90371 0.7721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9461900 4991900 4470000 3545300 1918900 1626400 5916700 3073100 2843600 0 0 0 0 0 0 0 0 0 0 0 0 13595 1892 14147 69228;69229 69935;69936 69936 2 HPQPGAVELAAK SVQTMSCYADVVVLRHPQPGAVELAAKHCR VLRHPQPGAVELAAKHCRRPVINAGDGVGE R H P A K H 3 0 0 0 0 1 1 1 1 0 1 1 0 0 2 0 0 0 0 1 0 0 12 0 1216.6564 F8VPD4;P27708;H7C2E4 F8VPD4 1962 1973 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00016144 87.149 By MS/MS By MS/MS 2 2 0.79126 0.72194 21.498 4 Median 0.91565 0.89455 27.389 2 0 Median 0.79126 0.69582 2.2802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23569000 12480000 11089000 9149200 4695900 4453300 14420000 7784500 6635500 0 0 0 0 0 0 0 0 0 0 0 0 13596 1057 14148 69230;69231;69232;69233 69937;69938;69939;69940;69941;69942 69942 6 HPSAEQSSHIDVVR AVDSAMELLFLDTFKHPSAEQSSHIDVVRF KHPSAEQSSHIDVVRFPCVVYINEVRVIPP K H P V R F 1 1 0 1 0 1 1 0 2 1 0 0 0 0 1 3 0 0 0 2 0 0 14 0 1560.7645 Q69YN4 Q69YN4 17 30 KIAA1429 Protein virilizer homolog yes yes 3 0.00022829 58.487 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.054 0.90932 10.025 4 Median NaN NaN NaN 0 0 Median 1.2954 1.0985 NaN 1 0 Median 0.8241 0.91564 NaN 1 0 Median 1.0067 0.88401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1035 0.90303 NaN 1 0 Median 6405000 3140000 3265000 0 0 0 916580 401960 514620 2885300 1493600 1391700 2230100 1087300 1142700 0 0 0 373010 157150 215860 13597 3130 14149 69234;69235;69236;69237 69943;69944;69945;69946 69946 4 HPSHSTTPSGPGDEVAR REAGVRELDPLGSGRHPSHSTTPSGPGDEV SHSTTPSGPGDEVARGIAGEKFDIVKKWGI R H P A R G 1 1 0 1 0 0 1 2 2 0 0 0 0 0 3 3 2 0 0 1 0 0 17 0 1730.7972 A0A087X1E4;P53365;E9PRV8;E9PPY7 A0A087X1E4 103 119 ARFIP2 Arfaptin-2 yes no 3 0.024415 15.766 By matching By MS/MS 1 1 0.70531 0.6619 13.317 2 Median 0.72537 0.72725 NaN 1 0 Median 0.6858 0.60242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 740190 404540 335650 110900 65026 45870 629300 339520 289780 0 0 0 0 0 0 0 0 0 0 0 0 13598 119 14150 69238;69239 69947 69947 1 HPSKPDPSGECNPDLR TKTPSSDVLVFDYTKHPSKPDPSGECNPDL PSKPDPSGECNPDLRLRGHQKEGYGLSWNP K H P L R L 0 1 1 2 1 0 1 1 1 0 1 1 0 0 4 2 0 0 0 0 0 0 16 1 1804.8162 Q09028 Q09028 157 172 RBBP4 Histone-binding protein RBBP4 yes yes 3 0.00021393 43.791 By MS/MS By matching By MS/MS 1 1 1 0.51394 0.50578 2.3347 3 Median NaN NaN NaN 0 0 Median 0.55356 0.50578 NaN 1 0 Median 0.51394 0.52164 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48006 0.4983 NaN 1 0 Median NaN NaN NaN 0 0 Median 6467400 4245900 2221500 0 0 0 2331200 1442700 888450 345130 225990 119150 0 0 0 3791100 2577200 1213900 0 0 0 13599 2746 14151 69240;69241;69242 69948;69949 69948 2 HPSTNSLLR AEREISKMKPSVAPRHPSTNSLLREQISLY PSVAPRHPSTNSLLREQISLYPEVKGEIAR R H P L R E 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 9 0 1023.5461 Q9P032 Q9P032 33 41 NDUFAF4 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 yes yes 2 0.0036742 63.48 By MS/MS 2 1.4645 1.1998 25.98 2 Median NaN NaN NaN 0 0 Median 1.4645 1.1998 25.98 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3284700 1336600 1948200 0 0 0 3284700 1336600 1948200 0 0 0 0 0 0 0 0 0 0 0 0 13600 4199 14152 69243;69244 69950;69951 69950 2 HPTGGSFIRPNK KHDGSHEGTVYFKCRHPTGGSFIRPNKVNF KCRHPTGGSFIRPNKVNFGTDFLTAIKNRY R H P N K V 0 1 1 0 0 0 0 2 1 1 0 1 0 1 2 1 1 0 0 0 0 0 12 1 1309.6891 Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8YER9;A0A2U3TZJ6;A0A2R8YFL4;A0A2R8Y809;A0A2R8Y4V6;A0A2R8YFM3;A0A2R8Y784;A0A2R8Y4P2;A0A2R8Y787;A0A2R8Y5H6;A0A2R8Y6G3;A0A2R8Y7H8 Q15813 63 74 TBCE Tubulin-specific chaperone E yes no 3 0.0069891 31.989 By MS/MS By matching 2 1 0.77206 0.70574 30.918 3 Median NaN NaN NaN 0 0 Median 0.66004 0.60672 21.38 2 0 Median NaN NaN NaN 0 0 Median 1.0315 0.96798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2070300 1106500 963840 0 0 0 1989900 1074000 915900 0 0 0 80421 32473 47949 0 0 0 0 0 0 13601 373 14153 69245;69246;69247 69952 69952 1 HPTLLQDPDLR KRRAALERYLQRTVKHPTLLQDPDLRQFLE RTVKHPTLLQDPDLRQFLESSELPRAVNTQ K H P L R Q 0 1 0 2 0 1 0 0 1 0 3 0 0 0 2 0 1 0 0 0 0 0 11 0 1303.6884 O60749;D6RC15 O60749 249 259 SNX2 Sorting nexin-2 yes no 2 0.00075693 87.913 By MS/MS 1 0.069313 0.064283 NaN 1 Median 0.069313 0.064283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 266380000 252370000 14006000 266380000 252370000 14006000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13602 1629 14154 69248 69953 69953 1 HPTPTMLSIQK EPPHKKGMEELKKLRHPTPTMLSIQKWQFS KKLRHPTPTMLSIQKWQFSMSAIKEEQELM R H P Q K W 0 0 0 0 0 1 0 0 1 1 1 1 1 0 2 1 2 0 0 0 0 0 11 0 1251.6645 O14776;G3V220 O14776 589 599 TCERG1 Transcription elongation regulator 1 yes no 2 0.00012339 137.98 By matching By MS/MS By MS/MS 1 1 3 0.7648 0.69535 13.406 5 Median NaN NaN NaN 0 0 Median 0.64774 0.55133 NaN 1 0 Median 0.64391 0.68687 NaN 1 0 Median 0.89104 0.77801 5.7394 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33636000 17672000 15964000 0 0 0 3478600 1287700 2190800 17277000 9919800 7356900 12881000 6464100 6416400 0 0 0 0 0 0 13603 1494 14155;14156 69249;69250;69251;69252;69253 69954;69955;69956;69957 69954 480 4 HPTTGQILGYK AVLGAPVPSDLQAQRHPTTGQILGYKEVLL QAQRHPTTGQILGYKEVLLENTNLSATTSL R H P Y K E 0 0 0 0 0 1 0 2 1 1 1 1 0 0 1 0 2 0 1 0 0 0 11 0 1213.6455 Q15477;B4E0B4 Q15477 107 117 SKIV2L Helicase SKI2W yes no 2 0.00016938 93.111 By matching By MS/MS By matching 1 1 1 1.2733 1.1203 14.252 3 Plateau 1.0156 1.0089 NaN 1 0 Median 1.3216 1.1203 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0067 0.84506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11381000 5332100 6049000 2304500 966530 1338000 8332100 3981900 4350200 0 0 0 744570 383730 360840 0 0 0 0 0 0 13604 2955 14157 69254;69255;69256 69958;69959 69959 2 HPVIDVLLGEQDQYVPNNTDLSEDSER PTVQEERKIVIKNGRHPVIDVLLGEQDQYV QYVPNNTDLSEDSERVMIITGPNMGGKSSY R H P E R V 0 1 2 4 0 2 3 1 1 1 3 0 0 0 2 2 1 0 1 3 0 0 27 0 3081.4527 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 864 890 MSH3 DNA mismatch repair protein Msh3 yes no 3 3.1209E-05 31.384 By MS/MS 1 0.60499 0.66334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60499 0.66334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2535300 1539200 996080 0 0 0 0 0 0 2535300 1539200 996080 0 0 0 0 0 0 0 0 0 13605 2080 14158 69257 69960 69960 1 HPVSLEQYLMEGSYNK ERLPAKDIQTNVYIKHPVSLEQYLMEGSYN PVSLEQYLMEGSYNKVFLAKGNIPAESYTF K H P N K V 0 0 1 0 0 1 2 1 1 0 2 1 1 0 1 2 0 0 2 1 0 0 16 0 1893.8931 R4GMR5;P48556;K7EJR3;K7EJC1 R4GMR5 165 180 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 3 0.057015 10.057 By MS/MS By matching 1 1 0.8838 0.78573 0.1854 2 Median 0.83468 0.7847 NaN 1 0 Median 0.9358 0.78676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9772800 5142000 4630800 6560700 3706500 2854200 3212100 1435500 1776600 0 0 0 0 0 0 0 0 0 0 0 0 13606 2362 14159 69258;69259 69961 69961 1 HPVTGQFLYQDSNWASK PLLYTLIEKTMQNVKHPVTGQFLYQDSNWA VTGQFLYQDSNWASKVEKLTLDNAAFPFLA K H P S K V 1 0 1 1 0 2 0 1 1 0 1 1 0 1 1 2 1 1 1 1 0 0 17 0 1976.9381 P02786;G3V0E5 P02786 515 531 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2;3 1.4237E-07 88.385 By MS/MS By MS/MS 4 2 1.1707 1.0812 14.793 6 Median 1.2155 1.1415 12.541 4 2 Median 1.0715 0.95648 7.6903 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32537000 15194000 17343000 29715000 13850000 15865000 2822600 1343800 1478800 0 0 0 0 0 0 0 0 0 0 0 0 13607 1836 14160 69260;69261;69262;69263;69264;69265 69962;69963;69964;69965;69966 69965 5 HPWDDISYVLPEHMSM GHYLDQKRLKQGLYRHPWDDISYVLPEHMS PWDDISYVLPEHMSM_______________ R H P S M - 0 0 0 2 0 0 1 0 2 1 1 0 2 0 2 2 0 1 1 1 0 0 16 0 1955.8546 P53396 P53396 1086 1101 ACLY ATP-citrate synthase yes yes 2 0.0082761 45.359 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3120700 0 0 3120700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13608 2467 14161 69266 69967 69967 1 HPWIVHWDQLPQYQLNR HVDPHQRLTAALVLRHPWIVHWDQLPQYQL WIVHWDQLPQYQLNRQDAPHLVKGAMAATY R H P N R Q 0 1 1 1 0 3 0 0 2 1 2 0 0 0 2 0 0 2 1 1 0 0 17 0 2229.1232 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 647 663 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 3 2.4624E-06 82.102 By MS/MS 1 0.70729 0.67258 NaN 1 Median 0.70729 0.67258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6461200 3505400 2955800 6461200 3505400 2955800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13609 581 14162 69267 69968;69969 69969 2 HPYFYAPELLYYANK EKKFWGKYLYEIARRHPYFYAPELLYYANK HPYFYAPELLYYANKYNGVFQECCQAEDKG R H P N K Y 2 0 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 0 4 0 0 0 15 0 1887.9196 CON__P02769 CON__P02769 169 183 yes yes 3 7.0753E-08 91.858 By MS/MS By MS/MS 1 1 0.029387 0.028192 29.877 2 Median 0.024523 0.022823 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.035216 0.034824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39115000 38416000 698220 31872000 31413000 459080 0 0 0 7243000 7003800 239140 0 0 0 0 0 0 0 0 0 + 13610 746 14163 69268;69269 69970;69971 69970 2 HPYLPINSAAIK RRLCREILRPWHAARHPYLPINSAAIKAEC AARHPYLPINSAAIKAECTARLPEASQSPL R H P I K A 2 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 1 0 0 0 12 0 1322.7347 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 498 509 MTA1 Metastasis-associated protein MTA1 yes no 2 9.8435E-05 127.92 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 0.66115 0.69789 28.59 9 Median 0.66115 0.65624 NaN 1 0 Median 0.6163 0.56321 NaN 1 0 Median 0.63834 0.66877 7.7287 2 0 Median 1.2833 1.1081 40.805 2 0 Median 0.64743 0.66948 5.8779 2 0 Median 1.0516 0.8687 NaN 1 0 Median 57822000 33265000 24557000 2608300 1314200 1294200 1952300 1011500 940750 25718000 15856000 9862000 3676300 1731300 1945000 22229000 12641000 9587500 1638600 710720 927920 13611 888 14164 69270;69271;69272;69273;69274;69275;69276;69277;69278 69972;69973;69974;69975 69972 4 HQACLLLQK LPILVQHITGPVRPRHQACLLLQKTLSMRE GPVRPRHQACLLLQKTLSMREVRSCFEDPE R H Q Q K T 1 0 0 0 1 2 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1109.6015 Q9BQG0;I3L1L3 Q9BQG0 1028 1036 MYBBP1A Myb-binding protein 1A yes no 2 0.033666 55.531 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13612 3789 14165 69279 69976 69976 1 HQAFEAELHANADR ESYKDPTNIQSKHQKHQAFEAELHANADRI KHQAFEAELHANADRIRGVIDMGNSLIERG K H Q D R I 4 1 1 1 0 1 2 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 14 0 1607.7441 A0A0D9SF54;Q13813 Q13813 1592 1605 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3;4 5.4442E-09 161.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 6 6 3 2 1.0952 1.0029 23.301 26 Median 1.2026 1.1284 17.766 5 1 Median 1.2312 0.98029 14.351 5 1 Median 0.91565 1.0085 24.201 6 2 Median 1.0668 0.92257 4.7073 5 0 Median 1.6778 1.7238 22.961 3 0 Median 1.1117 0.92509 11.803 2 0 Median 509650000 234390000 275260000 43843000 21717000 22127000 221660000 93764000 127900000 151480000 77508000 73967000 62487000 29637000 32850000 21034000 7333300 13700000 9147700 4432500 4715200 13613 264;2838 14166 69280;69281;69282;69283;69284;69285;69286;69287;69288;69289;69290;69291;69292;69293;69294;69295;69296;69297;69298;69299;69300;69301;69302;69303;69304;69305;69306;69307;69308 69977;69978;69979;69980;69981;69982;69983;69984;69985;69986;69987;69988;69989;69990;69991;69992;69993;69994;69995;69996;69997;69998;69999;70000;70001;70002;70003;70004;70005;70006;70007;70008;70009;70010;70011;70012;70013;70014;70015;70016;70017;70018;70019;70020;70021;70022;70023;70024 70015 48 HQAFEAELSANQSR EAYKDPSNLQGKVQKHQAFEAELSANQSRI KHQAFEAELSANQSRIDALEKAGQKLIDVN K H Q S R I 3 1 1 0 0 2 2 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 14 0 1586.7437 A0A0D9SF54;Q13813 Q13813 614 627 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.5204E-43 227.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 6 7 3 3 0.9985 0.88671 23.621 25 Median 1.2806 1.2582 39.156 3 1 Median 1.1664 0.9296 10.477 3 1 Median 0.83893 0.90654 29.954 6 1 Median 1.0026 0.88671 16.661 7 0 Median 1.0183 1.0426 23.757 3 1 Median 0.9985 0.84322 4.2567 3 0 Plateau 404710000 191710000 213000000 41580000 19011000 22569000 140870000 59114000 81757000 128230000 67488000 60745000 48521000 23877000 24644000 33224000 16308000 16916000 12286000 5913300 6372800 13614 264;2838 14167 69309;69310;69311;69312;69313;69314;69315;69316;69317;69318;69319;69320;69321;69322;69323;69324;69325;69326;69327;69328;69329;69330;69331;69332;69333 70025;70026;70027;70028;70029;70030;70031;70032;70033;70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044;70045;70046;70047;70048;70049;70050;70051;70052;70053;70054;70055;70056;70057;70058 70041 34 HQAFEAEVQANSGAIVK ENYKDPTNLQGKLQKHQAFEAEVQANSGAI AFEAEVQANSGAIVKLDETGNLMISEGHFA K H Q V K L 4 0 1 0 0 2 2 1 1 1 0 1 0 1 0 1 0 0 0 2 0 0 17 0 1797.901 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 85 101 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.2487E-31 200.44 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 1.0719 1.0203 21.426 14 Median 1.2587 1.2115 7.4641 3 0 Median 1.2268 1.0955 13.692 3 0 Plateau 0.89037 0.97792 27.856 4 0 Median 1.0719 0.96994 17.892 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257220000 126710000 130510000 44265000 19982000 24283000 46461000 21554000 24907000 142960000 73605000 69355000 23534000 11567000 11968000 0 0 0 0 0 0 13615 264;2838 14168 69334;69335;69336;69337;69338;69339;69340;69341;69342;69343;69344;69345;69346;69347 70059;70060;70061;70062;70063;70064;70065;70066;70067;70068;70069;70070;70071;70072;70073;70074;70075;70076;70077;70078;70079;70080;70081;70082;70083;70084;70085;70086;70087;70088 70070 30 HQAFMAELASNK MSYDEARNLHSKWLKHQAFMAELASNKEWL WLKHQAFMAELASNKEWLDKIEKEGMQLIS K H Q N K E 3 0 1 0 0 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 12 0 1345.6449 Q01082;A0A087WUZ3 Q01082 1316 1327 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 9.1523E-06 98.048 By MS/MS By MS/MS By MS/MS 3 3 4 1.0474 0.9873 36.157 10 Median NaN NaN NaN 0 0 Median 1.4228 1.2631 46.252 3 1 Median 0.89947 0.99731 19.059 3 0 Median 1.0474 0.94887 12.508 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54145000 24183000 29962000 0 0 0 29156000 11909000 17247000 15488000 7719800 7768400 9500100 4553800 4946300 0 0 0 0 0 0 13616 2681 14169;14170 69348;69349;69350;69351;69352;69353;69354;69355;69356;69357 70089;70090;70091;70092;70093;70094;70095;70096;70097;70098 70097 1370 10 HQAFMAELASNKEWLDKIEK MSYDEARNLHSKWLKHQAFMAELASNKEWL AELASNKEWLDKIEKEGMQLISEKPETEAV K H Q E K E 3 0 1 1 0 1 3 0 1 1 2 3 1 1 0 1 0 1 0 0 0 0 20 2 2387.1944 Q01082;A0A087WUZ3 Q01082 1316 1335 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 8.6169E-09 63.578 By MS/MS By matching By MS/MS 1 1 2 1.2292 1.3504 19.283 4 Median 1.5544 1.7019 NaN 1 0 Median 1.4149 1.4739 NaN 1 0 Median 1.0059 1.1655 8.4468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29685000 13830000 15855000 5358300 2196900 3161500 3194100 1085000 2109100 21132000 10548000 10584000 0 0 0 0 0 0 0 0 0 13617 2681 14171 69358;69359;69360;69361 70099;70100;70101;70102 70101 4 HQALQAEIAGHEPR NRGKDLIGVQNLLKKHQALQAEIAGHEPRI KHQALQAEIAGHEPRIKAVTQKGNAMVEEG K H Q P R I 3 1 0 0 0 2 2 1 2 1 1 0 0 0 1 0 0 0 0 0 0 0 14 0 1555.7855 A0A0D9SF54;Q13813 Q13813 826 839 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 7.7445E-12 163.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 1 1 0.91039 0.8793 16.696 11 Median 0.89704 0.86824 1.79 2 1 Median 1.0258 0.84551 11.895 2 0 Median 0.73852 0.80868 21.199 2 1 Median 1.042 0.88664 23.458 3 1 Median 1.0116 1.0475 NaN 1 1 Median 0.83821 0.68103 NaN 1 1 Median 176290000 88251000 88041000 14650000 7266100 7383400 66918000 33525000 33392000 58902000 31161000 27741000 25813000 11228000 14585000 7439600 3561800 3877900 2570500 1509000 1061500 13618 264;2838 14172 69362;69363;69364;69365;69366;69367;69368;69369;69370;69371;69372;69373;69374;69375 70103;70104;70105;70106;70107;70108;70109;70110;70111;70112;70113;70114;70115;70116;70117;70118;70119;70120;70121;70122;70123;70124;70125;70126;70127;70128;70129 70122 27 HQAQIDHYLGLANK LALISLFSVPVIYERHQAQIDHYLGLANKN RHQAQIDHYLGLANKNVKDAMAKIQAKIPG R H Q N K N 2 0 1 1 0 2 0 1 2 1 2 1 0 0 0 0 0 0 1 0 0 0 14 0 1606.8216 F8W914;Q9NQC3;H7C106 F8W914 311 324 RTN4 Reticulon;Reticulon-4 yes no 2;3;4 1.2179E-08 155.48 By MS/MS By MS/MS By MS/MS By MS/MS 10 9 2 2 1.2465 1.1208 16.615 23 Median 1.0193 1.0165 17.327 10 0 Median 1.382 1.2253 14.52 9 0 Median 1.1445 1.1978 13.507 2 2 Median 1.4943 1.3015 10.083 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 448030000 220410000 227620000 183750000 86178000 97575000 237740000 121550000 116190000 13751000 7345200 6405900 12789000 5337300 7451300 0 0 0 0 0 0 13619 1087 14173 69376;69377;69378;69379;69380;69381;69382;69383;69384;69385;69386;69387;69388;69389;69390;69391;69392;69393;69394;69395;69396;69397;69398 70130;70131;70132;70133;70134;70135;70136;70137;70138;70139;70140;70141;70142;70143;70144;70145;70146;70147;70148;70149;70150;70151;70152;70153;70154;70155;70156 70147 26 HQASSSVFSWQQEK QTLPQATMNHRDIARHQASSSVFSWQQEKT RHQASSSVFSWQQEKTPSHLSSNSQRTPIR R H Q E K T 1 0 0 0 0 3 1 0 1 0 0 1 0 1 0 4 0 1 0 1 0 0 14 0 1647.7641 P49454 P49454 210 223 CENPF Centromere protein F yes yes 3 7.3547E-05 74.853 By MS/MS 1 1.4017 1.5135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4017 1.5135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4047200 1552900 2494200 0 0 0 0 0 0 4047200 1552900 2494200 0 0 0 0 0 0 0 0 0 13620 2383 14174 69399 70157 70157 1 HQDDEPVNSQYFQTTSTNLSLSNK SQAARVEIQERNGKRHQDDEPVNSQYFQTT QYFQTTSTNLSLSNKIRILQGPHANPVAVP R H Q N K I 0 0 3 2 0 3 1 0 1 0 2 1 0 1 1 4 3 0 1 1 0 0 24 0 2752.2576 Q6NSI4;B1AQ74 Q6NSI4 601 624 CXorf57 Uncharacterized protein CXorf57 yes no 3 1.8854E-13 75.539 By MS/MS 1 1.1529 1.2721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1529 1.2721 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5003400 2957000 2046400 0 0 0 0 0 0 5003400 2957000 2046400 0 0 0 0 0 0 0 0 0 13621 3141 14175 69400 70158 70158 1 HQDFDDLER EYRRLANSEKYCTPRHQDFDDLERKYWKNL KYCTPRHQDFDDLERKYWKNLTFVSPIYGA R H Q E R K 0 1 0 3 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1173.5051 A0A0C4DFL8;F5GX28;O94953;K7ES23 A0A0C4DFL8 112 120 KDM4B Lysine-specific demethylase 4B yes no 2 0.032216 48.283 By MS/MS 1 1.6174 1.7503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6174 1.7503 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1233900 409240 824680 0 0 0 0 0 0 1233900 409240 824680 0 0 0 0 0 0 0 0 0 13622 228 14176 69401 70159 70159 1 HQDVPSQDDSKPTQR HHFVAVALRKPDGSRHQDVPSQDDSKPTQR HQDVPSQDDSKPTQRQFTILNFNDLMSSAV R H Q Q R Q 0 1 0 3 0 3 0 0 1 0 0 1 0 0 2 2 1 0 0 1 0 0 15 1 1736.8078 Q9NRN7 Q9NRN7 253 267 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes yes 3 0.068709 10.658 By MS/MS By matching 1 1 0.77264 0.74898 1.4732 2 Median 0.74831 0.74122 NaN 1 0 Median 0.79777 0.75683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2035800 1074600 961250 1861100 980770 880340 174690 93783 80904 0 0 0 0 0 0 0 0 0 0 0 0 13623 4085 14177 69402;69403 70160;70161 70160 2 HQEAEMAQNAVR ITEPAICALRHLTSRHQEAEMAQNAVRLHY TSRHQEAEMAQNAVRLHYGLPVVVKLLHPP R H Q V R L 3 1 1 0 0 2 2 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 12 0 1382.6361 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0;A0A2R8Y6G0;A0A2R8Y815 A0A2R8Y804 475 486 CTNNB1 Catenin beta-1 yes no 2 0.053644 25.386 By MS/MS 1 1.6444 1.4762 NaN 1 Median NaN NaN NaN 0 0 Median 1.6444 1.4762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1031200 283150 748010 0 0 0 1031200 283150 748010 0 0 0 0 0 0 0 0 0 0 0 0 13624 368 14178 69404 70162 70162 1 HQEGEIFDTEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE RKPRHQEGEIFDTEKEKYEITEQRKIDQKA R H Q E K E 0 0 0 1 0 1 3 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1331.5994 Q02878 Q02878 227 237 RPL6 60S ribosomal protein L6 yes yes 2;3 4.3325E-05 88.681 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 1.1456 0.99357 17.684 8 Median 1.2218 1.1733 4.9756 2 0 Median 0.98522 0.85245 15.946 4 0 Median 1.0509 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2075 0.99979 NaN 1 0 Median 31654000 15406000 16248000 3617800 1511700 2106100 23293000 11498000 11795000 3007500 1495000 1512500 0 0 0 0 0 0 1735900 901540 834340 13625 2703 14179 69405;69406;69407;69408;69409;69410;69411;69412 70163;70164;70165;70166;70167;70168;70169;70170 70168 8 HQEGEIFDTEKEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE PRHQEGEIFDTEKEKYEITEQRKIDQKAVD R H Q E K Y 0 0 0 1 0 1 4 1 1 1 0 2 0 1 0 0 1 0 0 0 0 0 13 1 1588.7369 Q02878 Q02878 227 239 RPL6 60S ribosomal protein L6 yes yes 3 8.2259E-06 93.348 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 2 1.0997 0.99441 24.725 8 Median 1.0651 0.99742 NaN 1 0 Median 1.0997 1.0175 3.7146 2 0 Median 0.55781 0.58413 NaN 1 1 Median 1.1134 0.99142 NaN 1 0 Median 0.81417 0.85726 NaN 1 0 Median 1.4672 1.2614 10.229 2 0 Median 26393000 12802000 13591000 2084600 942410 1142200 14757000 6775900 7981500 4646100 2774100 1871900 817960 418460 399500 1405900 771320 634570 2681300 1120100 1561200 13626 2703 14180 69413;69414;69415;69416;69417;69418;69419;69420 70171;70172;70173;70174;70175;70176 70174 6 HQEGEIFDTEKEKYEITEQR LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE IFDTEKEKYEITEQRKIDQKAVDSQILPKI R H Q Q R K 0 1 0 1 0 2 6 1 1 2 0 2 0 1 0 0 2 0 1 0 0 0 20 2 2508.1769 Q02878 Q02878 227 246 RPL6 60S ribosomal protein L6 yes yes 3;4 1.1805E-19 126.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 3 1 1.1544 1.2 24.592 13 Median 1.0806 1.1441 6.2187 3 0 Median 1.1263 1.2 24.233 3 0 Median 1.2362 1.3929 0.4622 2 0 Median 1.1792 1.1796 NaN 1 0 Median 1.2117 1.4123 47.654 3 0 Plateau 1.1674 1.0569 NaN 1 0 Median 265820000 128420000 137400000 176730000 87625000 89101000 18922000 8786300 10136000 22138000 9522200 12616000 6364500 2792000 3572500 39222000 18630000 20592000 2446200 1062100 1384100 13627 2703 14181 69421;69422;69423;69424;69425;69426;69427;69428;69429;69430;69431;69432;69433 70177;70178;70179;70180;70181;70182;70183;70184;70185;70186;70187;70188;70189;70190;70191 70180 15 HQEHKGEIDAHEDSFK ELASDVAGAEALLDRHQEHKGEIDAHEDSF QEHKGEIDAHEDSFKSADESGQALLAAGHY R H Q F K S 1 0 0 2 0 1 3 1 3 1 0 2 0 1 0 1 0 0 0 0 0 0 16 1 1905.8606 A0A0D9SF54;Q13813 Q13813 403 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 2.1492E-05 76.341 By MS/MS By MS/MS By MS/MS By matching 3 4 3 1 1.03 1.0322 22.184 11 Median NaN NaN NaN 0 0 Median 1.1963 1.1412 13.627 3 0 Median 0.76612 0.87741 27.656 4 0 Median 1.033 0.96593 4.8771 3 0 Median 0.80613 0.90151 NaN 1 0 Median NaN NaN NaN 0 0 Median 21196000 9915600 11280000 0 0 0 11673000 5203100 6469800 6791800 3385800 3406100 2320800 1121100 1199700 410500 205670 204830 0 0 0 13628 264;2838 14182 69434;69435;69436;69437;69438;69439;69440;69441;69442;69443;69444 70192;70193;70194;70195;70196;70197;70198;70199;70200 70198 9 HQEPVYSVAFSPDGR LWDVDRGICIHTLTKHQEPVYSVAFSPDGR HQEPVYSVAFSPDGRYLASGSFDKCVHIWN K H Q G R Y 1 1 0 1 0 1 1 1 1 0 0 0 0 1 2 2 0 0 1 2 0 0 15 0 1687.7954 A0A0D9SF63;Q9BZK7 A0A0D9SF63 441 455 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 2;3 1.4917E-05 85.813 By MS/MS By matching 2 1 0.64323 0.64362 14.852 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57205 0.58366 13.83 2 0 Median 0.82019 0.70834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16337000 9514000 6823400 0 0 0 0 0 0 15185000 8940400 6244200 1152800 573630 579180 0 0 0 0 0 0 13629 265 14183 69445;69446;69447 70201;70202;70203 70203 3 HQEVLYSLLER IVTNLASVYIREGNRHQEVLYSLLERINPD EGNRHQEVLYSLLERINPDHSFPVSSHCLR R H Q E R I 0 1 0 0 0 1 2 0 1 0 3 0 0 0 0 1 0 0 1 1 0 0 11 0 1385.7303 Q9Y6X3 Q9Y6X3 433 443 MAU2 MAU2 chromatid cohesion factor homolog yes yes 2 0.00015337 82.749 By MS/MS By matching By matching 2 2 1 1.4179 1.237 35.449 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72321 0.75909 NaN 1 0 Median 1.4179 1.237 5.5126 2 0 Median 1.8198 1.7955 NaN 1 0 Median NaN NaN NaN 0 0 Median 4142900 2278500 1864400 0 0 0 0 0 0 2577300 1659200 918060 392210 115360 276850 1173400 503950 669490 0 0 0 13630 4499 14184 69448;69449;69450;69451;69452 70204;70205 70204 2 HQEYLNSILQHAK EKQQKIEQERKRRQKHQEYLNSILQHAKDF QKHQEYLNSILQHAKDFKEYHRSVTGKIQK K H Q A K D 1 0 1 0 0 2 1 0 2 1 2 1 0 0 0 1 0 0 1 0 0 0 13 0 1579.8107 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y4C5;A0A2R8YGP5;P51531;F6VDE0;A0A0U1RQZ9 P51532 472 484 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 1.097E-07 113.99 By MS/MS By MS/MS By MS/MS 1 2 1 1.2237 1.1724 31.524 4 Median NaN NaN NaN 0 0 Median 1.0681 0.94265 NaN 1 0 Median 1.3065 1.4619 41.2 2 0 Median 1.402 1.2581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85841000 39230000 46611000 0 0 0 1891100 1049100 842030 71387000 33090000 38298000 12563000 5091500 7471300 0 0 0 0 0 0 13631 366;2433 14185 69453;69454;69455;69456 70206;70207;70208;70209;70210 70210 5 HQFAWPFQQPVDAVK QLQYLLRVVLKTLWKHQFAWPFQQPVDAVK HQFAWPFQQPVDAVKLNLPDYYKIIKTPMD K H Q V K L 2 0 0 1 0 3 0 0 1 0 0 1 0 2 2 0 0 1 0 2 0 0 15 0 1796.8998 O60885;M0QZD9;M0R0H4;M0QYW0 O60885 77 91 BRD4 Bromodomain-containing protein 4 yes no 3 0.026397 18.138 By MS/MS 2 0.77866 0.83074 13.636 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77866 0.83074 13.636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4249800 2366200 1883700 0 0 0 0 0 0 4249800 2366200 1883700 0 0 0 0 0 0 0 0 0 13632 1638 14186 69457;69458 70211;70212 70212 2 HQFAWPFYQPVDAIK QLQYMQNVVVKTLWKHQFAWPFYQPVDAIK HQFAWPFYQPVDAIKLNLPDYHKIIKNPMD K H Q I K L 2 0 0 1 0 2 0 0 1 1 0 1 0 2 2 0 0 1 1 1 0 0 15 0 1845.9202 Q15059;A9J571 Q15059 53 67 BRD3 Bromodomain-containing protein 3 yes no 2;3 0.012785 25.437 By MS/MS By matching 2 1 0.5371 0.55144 13.968 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52312 0.57599 19.431 2 0 Median NaN NaN NaN 0 0 Median 0.5371 0.55144 NaN 1 0 Median NaN NaN NaN 0 0 Median 10952000 7126700 3824900 0 0 0 0 0 0 10165000 6594800 3570400 0 0 0 786550 531980 254580 0 0 0 13633 2923 14187 69459;69460;69461 70213;70214;70215 70213 3 HQFGQEKDVFAPR VPGLYVIDSIVRQSRHQFGQEKDVFAPRFS SRHQFGQEKDVFAPRFSNNIISTFQNLYRC R H Q P R F 1 1 0 1 0 2 1 1 1 0 0 1 0 2 1 0 0 0 0 1 0 0 13 1 1557.7688 A0A0A0MT33;Q9UPN6 A0A0A0MT33 153 165 SCAF8 Protein SCAF8 yes no 3 0.00034146 59.871 By MS/MS 1 0.76004 0.86221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76004 0.86221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3462800 1960700 1502200 0 0 0 0 0 0 3462800 1960700 1502200 0 0 0 0 0 0 0 0 0 13634 186 14188 69462 70216 70216 1 HQFGTDKDVFGPR VPGLYVIDSIVRQSRHQFGTDKDVFGPRFS SRHQFGTDKDVFGPRFSKNITATFQYLYLC R H Q P R F 0 1 0 2 0 1 0 2 1 0 0 1 0 2 1 0 1 0 0 1 0 0 13 1 1502.7266 O95104 O95104 75 87 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 3 0.00012033 75.102 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 0.81847 0.79739 19.782 7 Median 0.77918 0.79739 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84646 0.95988 NaN 1 0 Median 0.81549 0.78548 0.83655 2 0 Median 0.96933 1.0961 NaN 1 0 Median 0.86327 0.76764 34.396 2 0 Median 31638000 16039000 15598000 1712100 897910 814180 0 0 0 19801000 10197000 9604500 5209300 2549300 2660100 3562700 1757700 1805000 1352200 637740 714460 13635 1745 14189 69463;69464;69465;69466;69467;69468;69469 70217;70218;70219;70220 70218 4 HQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMK IEPKLLGKLKDIIKRHQGTVTEDKNNASHV PGNLEEEEWVRPVMKRDKQVLLHWGYYPDS R H Q M K R 1 1 3 1 0 1 5 2 2 0 1 2 1 0 3 1 2 1 1 6 0 0 34 2 3887.8901 Q8TAQ2;F8VXC8 Q8TAQ2 163 196 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 5 2.3062E-20 78.909 By MS/MS 1 0.44309 0.50489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44309 0.50489 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11837000 9270300 2566600 0 0 0 0 0 0 11837000 9270300 2566600 0 0 0 0 0 0 0 0 0 13636 3455 14190 69470 70221 70221 1 HQGVMVGMGQK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL R H Q Q K D 0 0 0 0 0 2 0 3 1 0 0 1 2 0 0 0 0 0 0 2 0 0 11 0 1170.5638 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76;Q562R1 P63261 40 50 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 2 7.7429E-41 226.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 12 4 2 5 6 1.1608 1.0369 25.402 40 Median 1.1494 1.0771 15.885 11 0 Median 1.2196 1.0582 36.76 12 0 Median 0.89222 0.92487 5.1304 4 0 Median 1.2124 1.0295 1.7487 2 0 Median 0.96451 0.96453 35.87 5 0 Median 1.2209 0.99709 15.903 6 0 Median 1162300000 533780000 628550000 358430000 161760000 196670000 545830000 239880000 305950000 172620000 89906000 82711000 13779000 6121800 7657300 59376000 30551000 28825000 12296000 5565900 6729700 13637 2625;2630;2595;3035 14191;14192 69471;69472;69473;69474;69475;69476;69477;69478;69479;69480;69481;69482;69483;69484;69485;69486;69487;69488;69489;69490;69491;69492;69493;69494;69495;69496;69497;69498;69499;69500;69501;69502;69503;69504;69505;69506;69507;69508;69509;69510 70222;70223;70224;70225;70226;70227;70228;70229;70230;70231;70232;70233;70234;70235;70236;70237;70238;70239;70240;70241;70242;70243;70244;70245;70246;70247;70248;70249;70250;70251;70252;70253;70254;70255;70256;70257;70258;70259;70260 70238 1260;1261 39 HQGVMVGMGQKDSYVGDEAQSK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV MGQKDSYVGDEAQSKRGILTLKYPIEHGIV R H Q S K R 1 0 0 2 0 3 1 4 1 0 0 2 2 0 0 2 0 0 1 3 0 0 22 1 2350.0682 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76 P63261 40 61 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 3;4 1.0145E-09 59.469 By MS/MS By MS/MS By matching 2 2 2 1.0235 0.94809 12.405 6 Median 0.95552 0.89158 13.107 2 0 Median 1.0481 0.94809 4.2236 2 0 Median 0.87637 0.955 22.864 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25615000 12234000 13382000 10320000 4875200 5444900 7220700 2997000 4223600 8074400 4361300 3713100 0 0 0 0 0 0 0 0 0 13638 2625;2630;2595 14193 69511;69512;69513;69514;69515;69516 70261;70262;70263;70264;70265 70265 5 HQGVMVGMGQKDSYVGDEAQSKR DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV GQKDSYVGDEAQSKRGILTLKYPIEHGIVT R H Q K R G 1 1 0 2 0 3 1 4 1 0 0 2 2 0 0 2 0 0 1 3 0 0 23 2 2506.1693 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76 P63261 40 62 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 4 0.010958 19.378 By MS/MS 1 1.467 1.5532 NaN 1 Median 1.467 1.5532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6167200 2220700 3946500 6167200 2220700 3946500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13639 2625;2630;2595 14194 69517 70266 70266 1 HQILEQAVEDYAETVHQLSK EKAKDEQSAVSMLKKHQILEQAVEDYAETV QAVEDYAETVHQLSKTSRALVADSHPESER K H Q S K T 2 0 0 1 0 3 3 0 2 1 2 1 0 0 0 1 1 0 1 2 0 0 20 0 2337.1601 Q01082;A0A087WUZ3 Q01082 1634 1653 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 2.3303E-09 83.063 By MS/MS By MS/MS By MS/MS 1 2 1 1.192 1.0874 6.6805 4 Median 1.191 1.1441 NaN 1 0 Median 1.2232 1.0874 3.1797 2 0 Median 0.89053 0.98174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50123000 23030000 27093000 5623600 2293000 3330600 28582000 12759000 15823000 15917000 7978100 7939200 0 0 0 0 0 0 0 0 0 13640 2681 14195 69518;69519;69520;69521 70267;70268;70269;70270;70271;70272;70273;70274;70275;70276 70272 10 HQITYLIHQAK SKKKGEQPTGQQRRKHQITYLIHQAKEREL QRRKHQITYLIHQAKERELELKNTWSENKL K H Q A K E 1 0 0 0 0 2 0 0 2 2 1 1 0 0 0 0 1 0 1 0 0 0 11 0 1350.7408 Q92733;H0YE12;H0Y679 Q92733 455 465 PRCC Proline-rich protein PRCC yes no 3 0.00010218 70.942 By MS/MS By MS/MS 2 1 1.3009 1.3245 16.995 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1518 1.1816 22.152 2 0 Median 1.5573 1.3245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15675000 6816600 8858300 0 0 0 0 0 0 11383000 5311800 6070900 4292200 1504800 2787400 0 0 0 0 0 0 13641 3550 14196 69522;69523;69524 70277;70278;70279;70280;70281;70282 70278 6 HQIVEVAGDDK VTHLKWDDPYYDIARHQIVEVAGDDKYGRK DIARHQIVEVAGDDKYGRKIIVFSACRMPP R H Q D K Y 1 0 0 2 0 1 1 1 1 1 0 1 0 0 0 0 0 0 0 2 0 0 11 0 1209.599 Q07960;H0YE29;E9PNR6 Q07960 70 80 ARHGAP1 Rho GTPase-activating protein 1 yes no 2 0.0033908 74.944 By MS/MS 2 0.99944 0.86802 NaN 1 Median NaN NaN NaN 0 0 Median 0.99944 0.86802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1372900 617090 755840 0 0 0 1372900 617090 755840 0 0 0 0 0 0 0 0 0 0 0 0 13642 2734 14197 69525;69526 70283;70284 70284 2 HQIVEVAGDDKYGR VTHLKWDDPYYDIARHQIVEVAGDDKYGRK RHQIVEVAGDDKYGRKIIVFSACRMPPSHQ R H Q G R K 1 1 0 2 0 1 1 2 1 1 0 1 0 0 0 0 0 0 1 2 0 0 14 1 1585.7849 Q07960;H0YE29;E9PNR6 Q07960 70 83 ARHGAP1 Rho GTPase-activating protein 1 yes no 3 7.3731E-08 113.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.4024 1.3125 37.261 6 Median 1.4214 1.4659 34.04 2 0 Median 1.2758 1.1651 NaN 1 0 Median 1.214 1.2289 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.8718 2.9806 NaN 1 0 Median 1.5415 1.4017 NaN 1 0 Median 17803000 7221400 10581000 6417700 2989900 3427800 4028000 1865200 2162800 1615900 759890 856000 0 0 0 3815300 870220 2945100 1925700 736180 1189500 13643 2734 14198 69527;69528;69529;69530;69531;69532 70285;70286;70287;70288;70289;70290 70289 4 HQIVEVAGDDKYGRK VTHLKWDDPYYDIARHQIVEVAGDDKYGRK HQIVEVAGDDKYGRKIIVFSACRMPPSHQL R H Q R K I 1 1 0 2 0 1 1 2 1 1 0 2 0 0 0 0 0 0 1 2 0 0 15 2 1713.8798 Q07960;H0YE29;E9PNR6 Q07960 70 84 ARHGAP1 Rho GTPase-activating protein 1 yes no 4 0.00010209 54.09 By MS/MS By MS/MS 1 1 0.84474 0.95505 28.835 2 Median 1.048 1.1711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6809 0.77889 NaN 1 1 Median NaN NaN NaN 0 0 Median 6336700 2874900 3461700 3640900 1786300 1854500 0 0 0 0 0 0 0 0 0 2695800 1088600 1607200 0 0 0 13644 2734 14199 69533;69534 70291;70292;70293 70292 3 HQLEEELR LETDRRGALKAQTWKHQLEEELRQQKEAAC LKAQTWKHQLEEELRQQKEAACFKARPNTV K H Q L R Q 0 1 0 0 0 1 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1052.5251 Q9ULW0 Q9ULW0 610 617 TPX2 Targeting protein for Xklp2 yes yes 2 0.0059586 73.26 By MS/MS 1 1.3048 1.3948 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3048 1.3948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1915800 844560 1071300 0 0 0 0 0 0 1915800 844560 1071300 0 0 0 0 0 0 0 0 0 13645 4330 14200 69535 70294;70295 70294 2 HQLLEADISAHEDR DYGKDLASVNNLLKKHQLLEADISAHEDRL KHQLLEADISAHEDRLKDLNSQADSLMTSS K H Q D R L 2 1 0 2 0 1 2 0 2 1 2 0 0 0 0 1 0 0 0 0 0 0 14 0 1632.7856 A0A0D9SF54;Q13813 Q13813 1700 1713 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 1.2436E-08 157.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 4 4 1 1 1.0754 0.93193 34.824 14 Median 1.1707 1.1324 0.052675 2 0 Median 1.341 1.1076 30.433 2 0 Median 0.72791 0.79708 29.033 4 0 Median 0.97774 1.3595 47.814 4 1 Linear 0.67319 0.70265 NaN 1 0 Median 1.2937 1.0523 NaN 1 0 Median 208020000 101590000 106440000 16738000 7857500 8880600 76199000 33898000 42301000 72453000 38472000 33981000 35014000 16925000 18089000 5452100 3700500 1751500 2167000 733770 1433300 13646 264;2838 14201 69536;69537;69538;69539;69540;69541;69542;69543;69544;69545;69546;69547;69548;69549 70296;70297;70298;70299;70300;70301;70302;70303;70304;70305;70306;70307;70308;70309;70310;70311;70312;70313;70314 70312 19 HQLLEADISAHEDRLK DYGKDLASVNNLLKKHQLLEADISAHEDRL QLLEADISAHEDRLKDLNSQADSLMTSSAF K H Q L K D 2 1 0 2 0 1 2 0 2 1 3 1 0 0 0 1 0 0 0 0 0 0 16 1 1873.9646 A0A0D9SF54;Q13813 Q13813 1700 1715 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 4 1.3511E-11 139.58 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.036 1.0918 13.574 6 Median 1.1576 1.1644 NaN 1 0 Median 1.2114 1.1143 NaN 1 0 Median 0.91006 1.06 1.2918 2 1 Median 0.88464 0.85402 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4608 1.2824 NaN 1 0 Median 94764000 45856000 48908000 9135300 4357100 4778200 30064000 14475000 15589000 53245000 26002000 27243000 1646600 802580 843990 0 0 0 672900 218970 453940 13647 264;2838 14202 69550;69551;69552;69553;69554;69555 70315;70316;70317;70318;70319;70320;70321;70322 70317 8 HQLNELGSESAK FGDDDEIPQELLLGKHQLNELGSESAKIKA LGKHQLNELGSESAKIKAMGIMDKLSTDKT K H Q A K I 1 0 1 0 0 1 2 1 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1311.6419 A0A590UJS4;Q6KC79 A0A590UJS4 1236 1247 NIPBL Nipped-B-like protein yes no 2 0.0043579 43.77 By matching By MS/MS 2 1 0.79194 0.83649 9.9189 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80676 0.88809 13.148 2 0 Median NaN NaN NaN 0 0 Median 0.79194 0.83649 NaN 1 0 Median NaN NaN NaN 0 0 Median 2426800 1419200 1007600 0 0 0 0 0 0 780660 431460 349210 0 0 0 1646200 987760 658400 0 0 0 13648 488 14203 69556;69557;69558 70323 70323 1 HQLVVSSPPRPVR FKDVNNWWIVKDPRRHQLVVSSPPRPVRHG RRHQLVVSSPPRPVRHGDMVQLVHGMTTRS R H Q V R H 0 2 0 0 0 1 0 0 1 0 1 0 0 0 3 2 0 0 0 3 0 0 13 1 1470.8419 Q9Y6A1;Q5JT03 Q9Y6A1 384 396 POMT1 Protein O-mannosyl-transferase 1 yes no 3 0.00012648 74.46 By MS/MS By matching 1 1 0.84823 0.86087 3.9166 2 Median NaN NaN NaN 0 0 Median 0.89342 0.83736 NaN 1 0 Median 0.80532 0.88505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6328900 3184600 3144300 0 0 0 4008800 1837500 2171200 2320100 1347100 973030 0 0 0 0 0 0 0 0 0 13649 4485 14204 69559;69560 70324;70325 70325 2 HQNTEVVLYLAR SAVQMYENCLRKFYKHQNTEVVLYLARALF FYKHQNTEVVLYLARALFKCGKLQECKQTL K H Q A R A 1 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 1 2 0 0 12 0 1441.7678 Q6PD62 Q6PD62 714 725 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2;3 1.4178E-06 100.09 By matching By MS/MS By MS/MS 1 1 2 1.3755 1.2983 12.37 4 Median 1.5762 1.4761 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2926 1.4216 NaN 1 0 Median 1.3755 1.1719 1.6535 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14064000 5775700 8288000 3924300 1646800 2277500 0 0 0 7003100 2836600 4166500 3136300 1292300 1844000 0 0 0 0 0 0 13650 3168 14205 69561;69562;69563;69564 70326;70327;70328;70329 70327 4 HQNVQLPR GHKLHGKPIRITLSKHQNVQLPREGQEDQG IRITLSKHQNVQLPREGQEDQGLTKDYGNS K H Q P R E 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 990.53591 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;K7EK45;A0A087WUW5 A0A0U1RRM4 468 475 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 4.644E-06 138.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 2 1.0166 0.87393 46.364 9 Median NaN NaN NaN 0 0 Median 0.64913 0.5545 108.51 2 1 Median 0.84073 0.86348 19.316 3 1 Median 1.1318 0.97266 NaN 1 0 Median 0.75318 0.75498 NaN 1 1 Median 1.1228 0.94789 11.488 2 0 Median 47270000 28440000 18829000 0 0 0 19408000 13984000 5424300 15652000 8378800 7273200 2235100 1011600 1223500 4585200 2455300 2129900 5389300 2610800 2778500 13651 312 14206 69565;69566;69567;69568;69569;69570;69571;69572;69573;69574 70330;70331;70332;70333;70334;70335;70336;70337;70338;70339;70340;70341 70334 12 HQPTAIIAK GHSVEELCKAFGQAKHQPTAIIAKTFKGRG AFGQAKHQPTAIIAKTFKGRGITGVEDKES K H Q A K T 2 0 0 0 0 1 0 0 1 2 0 1 0 0 1 0 1 0 0 0 0 0 9 0 977.56581 P29401;A0A0B4J1R6;E9PFF2 P29401 233 241 TKT Transketolase yes no 2 0.00041855 130.56 By MS/MS By MS/MS By MS/MS 4 2 1 0.9528 0.91521 10.358 7 Median 0.92406 0.90534 9.9733 4 0 Median 1.1175 0.94745 17.441 2 0 Median 0.92569 0.98503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86122000 44662000 41460000 22829000 12428000 10401000 60048000 30489000 29559000 3244500 1744800 1499700 0 0 0 0 0 0 0 0 0 13652 2173 14207 69575;69576;69577;69578;69579;69580;69581 70342;70343;70344;70345;70346;70347;70348;70349;70350 70349 9 HQQLLEEK KQTKVEGELEEMERKHQQLLEEKNILAEQL LEEMERKHQQLLEEKNILAEQLQAETELFA K H Q E K N 0 0 0 0 0 2 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1023.5349 P35580 P35580 882 889 MYH10 Myosin-10 yes yes 2 0.020415 46.426 By MS/MS By matching 1 1 1.205 1.045 4.3276 2 Median NaN NaN NaN 0 0 Median 1.1677 1.0135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2435 1.0775 NaN 1 0 Median 992060 437660 554400 0 0 0 774920 328620 446300 0 0 0 0 0 0 0 0 0 217140 109040 108100 13653 2245 14208 69582;69583 70351;70352 70352 2 HQQLLGEVLTQLSSR QAAIVRIMKMRKVLKHQQLLGEVLTQLSSR HQQLLGEVLTQLSSRFKPRVPVIKKCIDIL K H Q S R F 0 1 0 0 0 3 1 1 1 0 4 0 0 0 0 2 1 0 0 1 0 0 15 0 1707.9268 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJC4 A0A0C4DGX4 703 717 CUL1 Cullin-1 yes no 2;3 5.196E-10 119.76 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1231 1.0208 6.8443 6 Median 1.0229 1.0173 NaN 1 0 Median 1.175 1.0155 1.2067 2 0 Median 1.0813 1.1589 0.15421 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2344 1.0137 NaN 1 0 Median 27130000 12790000 14340000 1003400 500540 502840 20734000 9652100 11082000 5087600 2518000 2569600 0 0 0 0 0 0 304740 118880 185860 13654 256 14209 69584;69585;69586;69587;69588;69589 70353;70354;70355;70356;70357;70358;70359 70359 7 HQQQLLASPGSSTVDNK LLEERVTRLHGQLQRHQQQLLASPGSSTVD QQLLASPGSSTVDNKMLDDLYEDIHWLILV R H Q N K M 1 0 1 1 0 3 0 1 1 0 2 1 0 0 1 3 1 0 0 1 0 0 17 0 1808.9017 F2Z2X4;Q9C0E2 F2Z2X4 514 530 XPO4 Exportin-4 yes no 3 0.001721 27.85 By MS/MS 1 0.70124 0.61519 NaN 1 Median NaN NaN NaN 0 0 Median 0.70124 0.61519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2295300 1204400 1090900 0 0 0 2295300 1204400 1090900 0 0 0 0 0 0 0 0 0 0 0 0 13655 993 14210 69590 70360 70360 1 HQSFVLVGETGSGK PVWEYKDRFTDILVRHQSFVLVGETGSGKT RHQSFVLVGETGSGKTTQIPQWCVEYMRSL R H Q G K T 0 0 0 0 0 1 1 3 1 0 1 1 0 1 0 2 1 0 0 2 0 0 14 0 1444.731 O43143 O43143 153 166 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 1.121E-11 179.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 8 9 1.1549 1.0141 27.11 28 Median 1.1502 1.038 7.7999 2 0 Median 1.1786 1.0302 38.406 3 0 Median 1.0185 1.1835 41.216 4 0 Median 1.1301 0.9791 10.647 2 0 Median 1.1334 1.1269 24.297 8 0 Median 1.154 0.95129 13.58 9 2 Median 191830000 90805000 101020000 28993000 13884000 15110000 12179000 5376400 6802400 30066000 13804000 16262000 9807500 4668000 5139500 86580000 41902000 44678000 24201000 11170000 13030000 13656 1553 14211 69591;69592;69593;69594;69595;69596;69597;69598;69599;69600;69601;69602;69603;69604;69605;69606;69607;69608;69609;69610;69611;69612;69613;69614;69615;69616;69617;69618 70361;70362;70363;70364;70365;70366;70367;70368;70369;70370;70371;70372;70373;70374;70375;70376;70377;70378;70379;70380;70381;70382;70383;70384;70385;70386;70387;70388;70389;70390 70369 29 HQTLQGVAFPISR IKINEVQTDVGVDTKHQTLQGVAFPISREA TKHQTLQGVAFPISREAFQALEKLNNRQLN K H Q S R E 1 1 0 0 0 2 0 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1452.7837 Q12792;F8VS81 Q12792 172 184 TWF1 Twinfilin-1 yes no 2;3 5.7535E-11 132.32 By MS/MS By MS/MS By matching 6 3 1 1.0506 0.97941 61.275 10 Median 0.96606 0.93264 79.161 6 1 Median 1.2249 1.0272 14.326 3 0 Plateau NaN NaN NaN 0 0 Median 1.2531 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80666000 42331000 38335000 75766000 39883000 35883000 4627500 2313200 2314300 0 0 0 272810 134810 137990 0 0 0 0 0 0 13657 2759 14212 69619;69620;69621;69622;69623;69624;69625;69626;69627;69628 70391;70392;70393;70394;70395;70396 70395 6 HQTNISELKR LKAQELEKTQDDLMKHQTNISELKRTFLET DDLMKHQTNISELKRTFLETSTDTAVTNEW K H Q K R T 0 1 1 0 0 1 1 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 10 1 1224.6575 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31;A0A1B0GTF8;A0A0J9YW26;A0A0J9YWN0;A0A0J9YWE1;A0A0J9YWS4 A0A0A0MRA8 562 571 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 0.00091401 55.353 By matching By MS/MS 1 2 1.1731 1.1782 17.213 3 Median 1.39 1.4344 NaN 1 0 Median 1.1226 1.0951 10.341 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3019300 1354900 1664400 258280 100130 158150 2761000 1254800 1506200 0 0 0 0 0 0 0 0 0 0 0 0 13658 156 14213 69629;69630;69631 70397;70398;70399 70397 3 HQVEQLSSSLK AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ QGLRHQVEQLSSSLKQKEQQLKEVAEKQEA R H Q L K Q 0 0 0 0 0 2 1 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1254.6568 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 551 561 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 5.6955E-10 176.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 3 3 1.1791 1.085 33.416 14 Median NaN NaN NaN 0 0 Median 1.7852 1.5774 51.335 2 0 Median 1.0805 1.1965 17.804 4 1 Median 1.2353 1.1179 5.8669 2 0 Median 0.94948 0.99548 52.626 3 1 Median 1.175 1.0061 16.752 3 1 Plateau 152510000 74426000 78088000 0 0 0 15984000 7097400 8887000 55281000 27466000 27815000 9525000 4231600 5293300 51916000 26098000 25817000 19809000 9533200 10276000 13659 2905;77 14214 69632;69633;69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645 70400;70401;70402;70403;70404;70405;70406;70407;70408;70409;70410;70411;70412;70413;70414;70415;70416;70417;70418 70409 19 HQVEYLGLLENVR NDKKSPQIFDDERCRHQVEYLGLLENVRVR CRHQVEYLGLLENVRVRRAGFAFRQTYEKF R H Q V R V 0 1 1 0 0 1 2 1 1 0 3 0 0 0 0 0 0 0 1 2 0 0 13 0 1568.8311 K7EIG7;O94832;J3QRN6 K7EIG7 520 532 MYO1D Unconventional myosin-Id yes no 3 0.00081592 45.79 By matching By MS/MS By MS/MS 1 1 1 0.7405 0.73773 6.4811 3 Median NaN NaN NaN 0 0 Median 0.83 0.73773 NaN 1 0 Median 0.64376 0.69183 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7405 0.78758 NaN 1 1 Median NaN NaN NaN 0 0 Median 5156500 3005300 2151200 0 0 0 136630 75513 61117 3065500 1836800 1228700 0 0 0 1954300 1093000 861350 0 0 0 13660 1359 14215 69646;69647;69648 70419;70420;70421 70419 3 HQVIQTVHPVEK KGPISDALAHHLRERHQVIQTVHPVEKKLT RERHQVIQTVHPVEKKLTYKCIHCLGVYTS R H Q E K K 0 0 0 0 0 2 1 0 2 1 0 1 0 0 1 0 1 0 0 3 0 0 12 0 1413.7728 Q9H2P0;A0A2R8Y6X0 Q9H2P0 647 658 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0003177 56.205 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.993 0.86552 20.351 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83614 0.88727 33.861 2 0 Median 1.0674 0.92061 12.83 2 0 Median 0.85857 0.89562 17.899 2 0 Median 0.87968 0.74103 26.066 2 0 Median 11228000 6159600 5067900 0 0 0 0 0 0 1976600 1194300 782260 1028100 501430 526650 6767200 3706400 3060800 1455700 757430 698230 13661 3946 14216 69649;69650;69651;69652;69653;69654;69655;69656 70422;70423;70424;70425;70426;70427 70424 6 HQVLFIADEIQTGLAR PDPGYLMGVRELCTRHQVLFIADEIQTGLA QVLFIADEIQTGLARTGRWLAVDYENVRPD R H Q A R T 2 1 0 1 0 2 1 1 1 2 2 0 0 1 0 0 1 0 0 1 0 0 16 0 1809.9737 P04181 P04181 256 271 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2;3 9.4268E-09 134.98 By matching By MS/MS By MS/MS 1 1 1 1.3513 1.179 23.091 3 Plateau 1.3443 1.3571 NaN 1 0 Median 1.3513 1.179 NaN 1 0 Median 0.86068 0.8642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16296000 7282100 9014200 1896900 857150 1039700 10737000 4496200 6240600 3662700 1928800 1733800 0 0 0 0 0 0 0 0 0 13662 1846 14217 69657;69658;69659 70428;70429;70430 70429 3 HQVQLLGR SEDTSIDYNPLYKERHQVQLLGRGFIAGID NPLYKERHQVQLLGRGFIAGIDLKQQKREQ R H Q G R G 0 1 0 0 0 2 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 949.54575 Q9BUQ8 Q9BUQ8 294 301 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0034479 95.62 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 1.1563 1.0815 8.1541 7 Median NaN NaN NaN 0 0 Median 1.2903 1.1063 14.014 2 1 Median 1.024 1.0746 1.1897 2 0 Median 1.3186 1.121 NaN 1 0 Median 0.88406 0.94444 NaN 1 0 Median 1.3286 1.0815 NaN 1 0 Median 20376000 9653700 10722000 0 0 0 7524900 3368700 4156300 6675300 3369600 3305700 3574400 1596200 1978200 1326200 755720 570500 1275000 563510 711510 13663 3842 14218 69660;69661;69662;69663;69664;69665;69666 70431;70432;70433;70434;70435;70436;70437 70431 7 HQVSVEGTNQTDVK EKEVPPGSAIIHIKKHQVSVEGTNQTDVKA KHQVSVEGTNQTDVKAVGGPAKLLVVSLEE K H Q V K A 0 0 1 1 0 2 1 1 1 0 0 1 0 0 0 1 2 0 0 3 0 0 14 0 1540.7481 Q14676 Q14676 541 554 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 0.00013435 68.83 By MS/MS By MS/MS By MS/MS By matching 4 6 1 1 1.3448 1.2439 9.6213 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1184 1.2125 10.295 4 0 Median 1.3554 1.2322 8.5435 6 0 Median NaN NaN NaN 0 0 Median 1.6878 1.41 NaN 1 0 Median 15274000 7048700 8225700 0 0 0 0 0 0 10227000 4884000 5342800 4545400 1930900 2614600 0 0 0 502210 233850 268360 13664 2887 14219 69667;69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678 70438;70439;70440;70441;70442;70443;70444;70445;70446;70447;70448 70445 11 HQYINEDEYEVNLK KEFEKFKFAIVMMGRHQYINEDEYEVNLKD RHQYINEDEYEVNLKDFEPQPGNMSHPRPW R H Q L K D 0 0 2 1 0 1 3 0 1 1 1 1 0 0 0 0 0 0 2 1 0 0 14 0 1792.8268 Q93009 Q93009 1048 1061 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 6.5648E-07 96.464 By matching By MS/MS 1 1 1.0738 1.0331 5.7809 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92844 0.99169 NaN 1 0 Median 1.2418 1.0762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17803000 9935200 7867700 0 0 0 0 0 0 11948000 7152400 4795300 5855200 2782800 3072400 0 0 0 0 0 0 13665 3574 14220 69679;69680 70449 70449 1 HQYYNQEWTLWDR ALPFFGFSEPLAAPRHQYYNQEWTLWDRFE PRHQYYNQEWTLWDRFEVQGLQPNGEEMTL R H Q D R F 0 1 1 1 0 2 1 0 1 0 1 0 0 0 0 0 1 2 2 0 0 0 13 0 1837.8172 P22314;Q5JRR6 P22314 945 957 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 0.00010955 84.658 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.2335 1.1131 6.6625 6 Median 1.1098 1.0733 5.4058 2 0 Median 1.3352 1.1369 3.2396 2 0 Median 0.95658 1.014 NaN 1 0 Median 1.3629 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17072000 7142800 9928900 8757300 3785800 4971500 7441600 2975100 4466500 693650 315650 378000 179150 66282 112870 0 0 0 0 0 0 13666 2100 14221 69681;69682;69683;69684;69685;69686 70450;70451 70450 2 HRDFVAEPMGEKPVGSLAGIGEVLGK ______________________________ KPVGSLAGIGEVLGKKLEERGFDKAYVVLG K H R G K K 2 1 0 1 0 0 3 5 1 1 2 2 1 1 2 1 0 0 0 3 0 0 26 2 2692.4007 O75531 O75531 7 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 4 4.8844E-30 97.063 By MS/MS 1 1.013 0.76986 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.013 0.76986 NaN 1 1 Median 22502000 10401000 12101000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22502000 10401000 12101000 13667 1682 14222 69687 70452 70452 1 HRDYETATLSDIK SIHEAWTDGKEAMLKHRDYETATLSDIKAL LKHRDYETATLSDIKALIRKHEAFESDLAA K H R I K A 1 1 0 2 0 0 1 0 1 1 1 1 0 0 0 1 2 0 1 0 0 0 13 1 1547.758 O43707 O43707 438 450 ACTN4 Alpha-actinin-4 yes yes 2;3 1.147E-07 158.3 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 2 1 3 0.95589 0.95324 46.076 13 Median 1.0689 1.1177 4.3941 3 0 Plateau 0.95589 0.87557 42.398 3 0 Median 0.84036 0.95324 NaN 1 0 Median 1.2466 1.1932 1.0469 2 0 Median 0.30735 0.3119 NaN 1 0 Median 0.64507 0.56305 10.273 3 0 Median 137180000 67181000 70003000 58527000 28168000 30360000 58895000 28891000 30004000 7686700 4190200 3496500 4729600 1865300 2864300 500140 346150 153980 6846300 3720900 3125400 13668 1585 14223 69688;69689;69690;69691;69692;69693;69694;69695;69696;69697;69698;69699;69700 70453;70454;70455;70456;70457;70458;70459;70460;70461;70462;70463;70464;70465 70454 13 HREQLVIEVGR GISHKAYQIDPTLRKHREQLVIEVGRKLDK TLRKHREQLVIEVGRKLDKAQMIRFEERTG K H R G R K 0 2 0 0 0 1 2 1 1 1 1 0 0 0 0 0 0 0 0 2 0 0 11 1 1334.7419 Q8N3C0 Q8N3C0 949 959 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.0063128 51.013 By MS/MS By MS/MS 2 2 1.2264 1.2278 19.459 4 Median 1.0233 1.1032 8.0279 2 1 Median 1.4984 1.4578 17.166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22163000 9658800 12504000 5603600 2572600 3031000 16559000 7086200 9472900 0 0 0 0 0 0 0 0 0 0 0 0 13669 3366 14224 69701;69702;69703;69704 70466;70467;70468 70466 3 HRFEVNPVWK RKLYGDADYLEERHRHRFEVNPVWKKCLEE EERHRHRFEVNPVWKKCLEEQGLKFVGQDV R H R W K K 0 1 1 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 2 0 0 10 1 1310.6884 P17812;A0A3B3IRI2;B4E1E0 P17812 480 489 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.0078195 50.292 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13670 2046 14225 69705 70469 70469 1 HRGPGLASGQLYSYPAR TGVAQSNCYIWMEKRHRGPGLASGQLYSYP GPGLASGQLYSYPARRWRKKRRAHPPEDPR R H R A R R 2 2 0 0 0 1 0 3 1 0 2 0 0 0 2 2 0 0 2 0 0 0 17 1 1828.9333 Q92785;J3KMZ8;E9PN04 Q92785 61 77 DPF2 Zinc finger protein ubi-d4 yes no 3;4 1.1488E-07 91.518 By MS/MS By MS/MS 2 3 1.0075 1.0125 19.658 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80705 0.87381 23.32 2 0 Median 1.1627 1.0845 12.2 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36253000 17477000 18776000 0 0 0 0 0 0 10914000 5692200 5221500 25339000 11784000 13555000 0 0 0 0 0 0 13671 1299 14226 69706;69707;69708;69709;69710 70470;70471;70472;70473;70474;70475;70476 70475 6 HRLDLGEDYPSGK ______________________________ KRHRLDLGEDYPSGKKRAGTDGKDRDRDRD R H R G K K 0 1 0 2 0 0 1 2 1 0 2 1 0 0 1 1 0 0 1 0 0 0 13 1 1485.7212 O43143 O43143 5 17 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 1.0312E-05 92.039 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 0.92394 1.0165 17.579 9 Median 1.0124 1.0388 14.332 2 2 Median 1.2797 1.273 NaN 1 0 Median 0.90009 1.0204 NaN 1 0 Median 1.1394 1.0725 NaN 1 0 Median 0.89424 0.94985 9.5954 2 0 Median 0.87668 0.78009 16.265 2 1 Median 64755000 33156000 31599000 12949000 6540800 6408300 6186700 2966500 3220200 10549000 5372500 5176600 3680600 1895400 1785200 27572000 14104000 13469000 3817200 2277600 1539700 13672 1553 14227 69711;69712;69713;69714;69715;69716;69717;69718;69719 70477;70478;70479;70480;70481;70482;70483;70484;70485;70486;70487 70480 10 HRNEVTVELR KSFKNKGRDVETMRRHRNEVTVELRKNKRD ETMRRHRNEVTVELRKNKRDEHLLKKRNVP R H R L R K 0 2 1 0 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 2 0 0 10 1 1251.6684 O00505 O00505 28 37 KPNA3 Importin subunit alpha-4 yes yes 3 0.00012794 77.744 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.2808 1.2092 27.425 6 Median 0.77669 0.77472 23.699 2 1 Median 1.3064 1.1781 NaN 1 0 Median 1.2557 1.3562 NaN 1 1 Median 1.3532 1.245 0.43811 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12572000 5470300 7101700 2658300 1377200 1281100 5492200 2243300 3248800 2048700 896940 1151800 2372800 952790 1420000 0 0 0 0 0 0 13673 1469 14228 69720;69721;69722;69723;69724;69725 70488;70489;70490;70491;70492;70493;70494 70492 7 HRPDLIDFDK TSWRDGMAFNALIHKHRPDLIDFDKLKKSN ALIHKHRPDLIDFDKLKKSNAHYNLQNAFN K H R D K L 0 1 0 3 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 10 1 1254.6357 Q01082;A0A087WUZ3;F8W6C1;P11277 Q01082 215 224 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic no no 3 0.00012794 94.465 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1011 1.0854 61.561 6 Median 1.2986 1.3071 NaN 1 1 Median 3.264 3.0326 6.5992 2 2 Median 0.74177 0.85063 2.822 2 0 Median 0.93369 0.90137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138230000 49449000 88781000 8198400 2778200 5420200 85032000 20601000 64431000 39325000 23027000 16298000 5673700 3042200 2631500 0 0 0 0 0 0 13674 2681;1960 14229 69726;69727;69728;69729;69730;69731 70495;70496;70497;70498;70499;70500;70501;70502;70503;70504 70498 10 HRPELIDYGK ISWKDGLGFCALIHRHRPELIDYGKLRKDD ALIHRHRPELIDYGKLRKDDPLTNLNTAFD R H R G K L 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 10 1 1226.6408 P12814;H9KV75;G3V2W4;G3V2N5;G3V2X9 P12814 186 195 ACTN1 Alpha-actinin-1 yes no 2;3 0.00014332 111.65 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 0.90665 0.90396 26.168 7 Median 0.97919 1.0199 NaN 1 0 Median 0.97856 0.93921 8.188 4 0 Median 0.79264 0.90396 NaN 1 1 Median 0.50606 0.48935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47787000 24539000 23248000 11308000 6157000 5150500 35006000 17606000 17399000 1131900 567760 564120 342180 208420 133760 0 0 0 0 0 0 13675 1983 14230 69732;69733;69734;69735;69736;69737;69738;69739 70505;70506;70507;70508;70509;70510;70511;70512;70513 70505 9 HRPELIEYDK ISWKDGLAFNALIHRHRPELIEYDKLRKDD ALIHRHRPELIEYDKLRKDDPVTNLNNAFE R H R D K L 0 1 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 10 1 1298.6619 O43707;K7EJH8 O43707 205 214 ACTN4 Alpha-actinin-4 yes no 2;3 0.00012056 125.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 3 0.86812 0.84079 40.7 10 Median 0.87617 0.9129 7.9558 2 0 Median 0.87222 0.82841 10.773 4 0 Median 0.59632 0.67734 NaN 1 0 Median 0.88327 0.84883 70.019 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 169440000 87201000 82242000 25489000 12799000 12690000 125610000 64798000 60815000 3679700 2187200 1492500 14662000 7417500 7244700 0 0 0 0 0 0 13676 1585 14231 69740;69741;69742;69743;69744;69745;69746;69747;69748;69749 70514;70515;70516;70517;70518;70519;70520;70521;70522;70523;70524;70525;70526;70527;70528 70514 15 HRPELIEYDKLR ISWKDGLAFNALIHRHRPELIEYDKLRKDD IHRHRPELIEYDKLRKDDPVTNLNNAFEVA R H R L R K 0 2 0 1 0 0 2 0 1 1 2 1 0 0 1 0 0 0 1 0 0 0 12 2 1567.8471 O43707;K7EJH8 O43707 205 216 ACTN4 Alpha-actinin-4 yes no 3 0.00044991 53.754 By MS/MS 1 0.83202 0.89613 NaN 1 Median 0.83202 0.89613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11048000 6051800 4996100 11048000 6051800 4996100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13677 1585 14232 69750 70529 70529 1 HRPIGIGVQGLADAFILMR INYYPVPEACLSNKRHRPIGIGVQGLADAF GIGVQGLADAFILMRYPFESAEAQLLNKQI R H R M R Y 2 2 0 1 0 1 0 3 1 3 2 0 1 1 1 0 0 0 0 1 0 0 19 1 2063.1462 P23921;E9PL69 P23921 498 516 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 3 4.7133E-59 152.71 By MS/MS By MS/MS 1 4 1.0533 1.0609 34.403 4 Median 1.1348 1.1635 NaN 1 0 Median 1.1097 1.098 38.641 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15935000 7696600 8237900 1248600 597690 650890 14686000 7098900 7587000 0 0 0 0 0 0 0 0 0 0 0 0 13678 2121 14233 69751;69752;69753;69754;69755 70530;70531;70532;70533;70534 70534 5 HRPQLLVER TPEQIEEAVEAAINRHRPQLLVERYHFNMG EAAINRHRPQLLVERYHFNMGLLMGEARAV R H R E R Y 0 2 0 0 0 1 1 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 9 1 1146.6622 P47897;A0A1B0GVU9;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2 P47897 133 141 QARS Glutamine--tRNA ligase yes no 2 0.01898 61.999 By matching By MS/MS By matching 1 1 1 0.7094 0.6286 26.773 3 Median 0.58361 0.59837 NaN 1 0 Median 0.98366 0.97321 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7094 0.6286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6621600 3364200 3257400 710850 362610 348240 5463000 2702200 2760800 0 0 0 447770 299420 148350 0 0 0 0 0 0 13679 2356 14234 69756;69757;69758 70535 70535 1 HRPSEADEEELAR RPRAVFHEEEQRRPKHRPSEADEEELARRR PKHRPSEADEEELARRREARKQEQANNPFY K H R A R R 2 2 0 1 0 0 4 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 13 1 1537.7121 O14617;A0A2R8Y611 O14617 655 667 AP3D1 AP-3 complex subunit delta-1 yes no 2;3 1.6116E-07 144.51 By MS/MS By MS/MS By MS/MS 5 4 1 0.86991 0.87797 13.986 9 Median 0.82167 0.87697 8.324 4 0 Median 0.89252 0.84841 20.656 4 0 Median NaN NaN NaN 0 0 Median 0.90799 0.88891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15356000 7833800 7522100 3549900 1767500 1782400 11396000 5836300 5560200 0 0 0 409560 230000 179560 0 0 0 0 0 0 13680 1485 14235 69759;69760;69761;69762;69763;69764;69765;69766;69767;69768 70536;70537;70538;70539;70540;70541;70542;70543 70540 8 HSASLIFLHGSGDSGQGLR SGSVLQRCIVSPAGRHSASLIFLHGSGDSG LIFLHGSGDSGQGLRMWIKQVLNQDLTFQH R H S L R M 1 1 0 1 0 1 0 4 2 1 3 0 0 1 0 4 0 0 0 0 0 0 19 0 1937.9708 Q5VWZ2 Q5VWZ2 20 38 LYPLAL1 Lysophospholipase-like protein 1 yes yes 3;4 3.7226E-27 130.39 By MS/MS By matching 3 1 1.2794 1.2159 13.957 3 Median 1.3715 1.3019 9.6586 2 1 Median 1.125 1.0544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52698000 21085000 31613000 40945000 16142000 24802000 11753000 4942500 6810900 0 0 0 0 0 0 0 0 0 0 0 0 13681 3115 14236 69769;69770;69771;69772 70544;70545;70546 70545 3 HSATFSSIVK GVCNLDEQLKVFVSRHSATFSSIVKGQRSL VFVSRHSATFSSIVKGQRSLHHRGDNLETL R H S V K G 1 0 0 0 0 0 0 0 1 1 0 1 0 1 0 3 1 0 0 1 0 0 10 0 1075.5662 Q66K74;M0QXQ9;M0QY41;M0QZ50 Q66K74 64 73 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes no 2 0.0015613 64.42 By MS/MS By MS/MS 1 1 1.1794 1.1421 40.112 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3999 1.5166 NaN 1 0 Median 0.99358 0.86004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9033300 4274700 4758600 0 0 0 0 0 0 3565000 1485600 2079400 5468300 2789100 2679200 0 0 0 0 0 0 13682 3121 14237 69773;69774 70547;70548;70549;70550 70550 4 HSATPFLK FLAVCSEAKGLVTLKHSATPFLKVEPFLPG KGLVTLKHSATPFLKVEPFLPGHYEVLDLK K H S L K V 1 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 0 0 8 0 899.4865 P08243;F8WEJ5;C9J057 P08243 169 176 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.069362 30.612 By MS/MS 1 1.0069 0.97381 NaN 1 Median 1.0069 0.97381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1850800 986320 864440 1850800 986320 864440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13683 1901 14238 69775 70551 70551 1 HSDELTSLLGYFPNKK DKADKDEQIRKIKSRHSDELTSLLGYFPNK SDELTSLLGYFPNKKQLEDWLHSKSKEINQ R H S K K Q 0 0 1 1 0 0 1 1 1 0 3 2 0 1 1 2 1 0 1 0 0 0 16 1 1847.9418 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;A0A494C0Y7;H7C0P8 Q92878 559 574 RAD50 DNA repair protein RAD50 yes no 2;3 7.2261E-08 134.75 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.88166 0.91455 15.784 5 Median 0.88166 0.86134 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86746 1.0043 13.236 2 0 Median 1.253 1.1682 NaN 1 0 Median 0.77541 0.8125 NaN 1 0 Median NaN NaN NaN 0 0 Median 40115000 20395000 19721000 6959900 3640800 3319100 0 0 0 31020000 15587000 15433000 723490 310830 412650 1412000 856390 555580 0 0 0 13684 3561 14239 69776;69777;69778;69779;69780 70552;70553;70554;70555;70556 70556 5 HSDFFNVK DSTDFNDKILNEPLKHSDFFNVKELFSVRS ILNEPLKHSDFFNVKELFSVRSLFDARVHL K H S V K E 0 0 1 1 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 1 0 0 8 0 992.47158 Q9Y399 Q9Y399 69 76 MRPS2 28S ribosomal protein S2, mitochondrial no no 2 0.004322 82.241 By MS/MS By MS/MS By matching 3 1 1 1.0841 1.0293 30.058 4 Median 1.0127 0.97654 12.569 3 0 Median 2.0022 1.6955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14461000 6074500 8386500 10780000 5067600 5712700 2335400 607890 1727500 0 0 0 0 0 0 0 0 0 1345400 399060 946300 13685 4409 14240 69781;69782;69783;69784;69785 70557;70558;70559 70559 3 HSEAATAQREEWK SKNEEDEGHSNSSPRHSEAATAQREEWKMF PRHSEAATAQREEWKMFIGGLSWDTTKKDL R H S W K M 3 1 0 0 0 1 3 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 13 1 1541.7223 Q14103;H0Y8G5;D6RAF8;D6RD83 Q14103 86 98 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 3 2.5074E-07 102.73 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1.1905 1.2175 17.908 9 Median 1.1905 1.274 NaN 1 0 Median 1.0793 1.0166 39.688 2 0 Median 1.1571 1.24 16.351 2 0 Median NaN NaN NaN 0 0 Median 1.0835 1.1429 8.9438 2 0 Median 1.3551 1.2287 7.0502 2 0 Median 37813000 17370000 20444000 1580900 642810 938120 1579300 684750 894590 4791400 2130000 2661400 0 0 0 23219000 11073000 12146000 6642900 2839100 3803800 13686 2854 14241 69786;69787;69788;69789;69790;69791;69792;69793;69794 70560;70561;70562;70563;70564;70565 70564 6 HSEAFEALQQK LKSDSHGPKEDGGFRHSEAFEALQQKSQGL GGFRHSEAFEALQQKSQGLDSRLQHVEDGV R H S Q K S 2 0 0 0 0 2 2 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1286.6255 Q07065 Q07065 395 405 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 1.0736E-09 172.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.5725 1.3114 34.838 7 Median 1.1626 1.0886 5.9074 2 0 Median 1.605 1.3407 3.1193 2 0 Median 1.1759 1.2234 NaN 1 0 Median 2.3764 2.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.2421 2.7328 NaN 1 1 Median 79678000 32438000 47240000 31195000 14215000 16980000 39899000 14789000 25110000 6322600 2854000 3468600 938730 274350 664390 0 0 0 1322700 305340 1017400 13687 2730 14242 69795;69796;69797;69798;69799;69800;69801 70566;70567;70568;70569;70570;70571;70572;70573;70574 70571 8 HSEELGTEEGEVEEMDTLDPQTGLFYR HIMQQALSSHTAFTKHSEELGTEEGEVEEM EEMDTLDPQTGLFYRSALTQSQSAKQQKLS K H S Y R S 0 1 0 2 0 1 7 3 1 0 3 0 1 1 1 1 3 0 1 1 0 0 27 0 3110.3663 E9PMC9;Q7Z589;H0YCS3;H0YET8 E9PMC9 816 842 C11orf30;EMSY Protein EMSY yes no 3 0.0037118 23.917 By MS/MS 1 0.78235 0.84724 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78235 0.84724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1280500 765130 515410 0 0 0 0 0 0 1280500 765130 515410 0 0 0 0 0 0 0 0 0 13688 966 14243 69802 70575 70575 1 HSEIQQLER DTQVTRQALNEISARHSEIQQLERSIRELH NEISARHSEIQQLERSIRELHDIFTFLATE R H S E R S 0 1 0 0 0 2 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1138.5731 Q12846 Q12846 207 215 STX4 Syntaxin-4 yes yes 2 0.019275 40.002 By MS/MS 2 1.3602 1.1506 8.9637 2 Median NaN NaN NaN 0 0 Median 1.3602 1.1506 8.9637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5924800 2773500 3151300 0 0 0 5924800 2773500 3151300 0 0 0 0 0 0 0 0 0 0 0 0 13689 2764 14244 69803;69804 70576 70576 1 HSELSELNVK MGPLIDEKLEDIDRKHSELSELNVKVMEAL DIDRKHSELSELNVKVMEALSLYTKLMNED K H S V K V 0 0 1 0 0 0 2 0 1 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1154.5932 Q92783;O75886 Q92783 354 363 STAM;STAM2 Signal transducing adapter molecule 1;Signal transducing adapter molecule 2 yes no 2 0.0027164 72.485 By MS/MS 1 0.013788 0.011843 NaN 1 Median NaN NaN NaN 0 0 Median 0.013788 0.011843 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2109800 2068900 40933 0 0 0 2109800 2068900 40933 0 0 0 0 0 0 0 0 0 0 0 0 13690 3556 14245 69805 70577 70577 1 HSESNAELGQLYWPNTSTLTTR SEDKEESMEIHATGKHSESNAELGQLYWPN LGQLYWPNTSTLTTRLRRLITAYQRSYKRQ K H S T R L 1 1 2 0 0 1 2 1 1 0 3 0 0 0 1 3 4 1 1 0 0 0 22 0 2504.1932 Q9P2D1 Q9P2D1 1891 1912 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 2.8742E-07 46.982 By MS/MS 2 0.97232 1.08 3.9482 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97232 1.08 3.9482 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3983500 2194200 1789300 0 0 0 0 0 0 3983500 2194200 1789300 0 0 0 0 0 0 0 0 0 13691 4220 14246 69806;69807 70578;70579 70579 2 HSETSATALMVAAGR VFHLILTENVSVDYRHSETSATALMVAAGR HSETSATALMVAAGRGFASQVEQLISMGAN R H S G R G 4 1 0 0 0 0 1 1 1 0 1 0 1 0 0 2 2 0 0 1 0 0 15 0 1500.7355 Q9H6S0;D6RA70 Q9H6S0 503 517 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 3 6.1688E-05 72.681 By MS/MS 2 2.1303 2.1563 64.099 2 Median 2.1303 2.1563 64.099 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6553400 2158100 4395300 6553400 2158100 4395300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13692 3977 14247 69808;69809 70580 70580 1 HSFFSTIDWNK NRLGAGPDGVEEIKRHSFFSTIDWNKLYRR EIKRHSFFSTIDWNKLYRREIHPPFKPATG R H S N K L 0 0 1 1 0 0 0 0 1 1 0 1 0 2 0 2 1 1 0 0 0 0 11 0 1380.6463 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 295 305 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 3 0.070414 10.905 By MS/MS 1 0.97572 0.97922 NaN 1 Median 0.97572 0.97922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1379400 774460 604940 1379400 774460 604940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13693 581 14248 69810 70581 70581 1 HSFGPLDYESLQQELALK FAKKLDPRREGGDQRHSFGPLDYESLQQEL GPLDYESLQQELALKETVWKKVSPESNEDI R H S L K E 1 0 0 1 0 2 2 1 1 0 4 1 0 1 1 2 0 0 1 0 0 0 18 0 2074.0371 B8ZZA8;B8ZZC5 B8ZZA8 122 139 GLS yes no 3 0.00056746 34.094 By MS/MS 2 0.95825 0.83375 0.40626 2 Median NaN NaN NaN 0 0 Median 0.95825 0.83375 0.40626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4132600 1858700 2273900 0 0 0 4132600 1858700 2273900 0 0 0 0 0 0 0 0 0 0 0 0 13694 645 14249 69811;69812 70582;70583 70582 2 HSFTEDHYVEFSK PLSALWGMKSVFDMKHSFTEDHYVEFSKHS MKHSFTEDHYVEFSKHSQDRVIGTKGDIAH K H S S K H 0 0 0 1 0 0 2 0 2 0 0 1 0 2 0 2 1 0 1 1 0 0 13 0 1624.7158 Q9Y4B6 Q9Y4B6 1174 1186 VPRBP Protein VPRBP yes yes 3 0.010372 26.124 By MS/MS By matching 1 1 1.0758 0.98638 0.58071 2 Median 1.0218 0.98234 NaN 1 0 Median 1.1327 0.99044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5727100 2759900 2967200 4505900 2192800 2313100 1221200 567170 654070 0 0 0 0 0 0 0 0 0 0 0 0 13695 4442 14250 69813;69814 70584;70585 70584 2 HSGASAEVQKEEEKK KKAYRKRALMHHPDRHSGASAEVQKEEEKK HSGASAEVQKEEEKKFKEVGEAFTILSDPK R H S K K F 2 0 0 0 0 1 4 1 1 0 0 3 0 0 0 2 0 0 0 1 0 0 15 2 1655.8115 Q99615 Q99615 413 427 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 4 0.0035266 29.013 By matching By MS/MS 1 1 1.1692 1.1573 18.013 2 Median 1.2882 1.3145 NaN 1 0 Median 1.0612 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 956840 473050 483790 263810 124170 139630 693030 348870 344160 0 0 0 0 0 0 0 0 0 0 0 0 13696 3759 14251 69815;69816 70586 70586 1 HSGDYFTLLR LLFTVLGSTARERAKHSGDYFTLLRHLLNY RERAKHSGDYFTLLRHLLNYAYNSNINVPN K H S L R H 0 1 0 1 0 0 0 1 1 0 2 0 0 1 0 1 1 0 1 0 0 0 10 0 1207.5986 Q93008 Q93008 1371 1380 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.0086503 65.224 By MS/MS By MS/MS 1 1 1.3995 1.1866 NaN 1 Median NaN NaN NaN 0 0 Median 1.3995 1.1866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2989500 1300400 1689200 0 0 0 2989500 1300400 1689200 0 0 0 0 0 0 0 0 0 0 0 0 13697 3573 14252 69817;69818 70587;70588 70587 2 HSGIGHGQASSAVR RHGSHHQLQSADSSRHSGIGHGQASSAVRD RHSGIGHGQASSAVRDSGHRGYSGSQASDS R H S V R D 2 1 0 0 0 1 0 3 2 1 0 0 0 0 0 3 0 0 0 1 0 0 14 0 1362.6753 CON__P20930;P20930 CON__P20930 2019 2032 FLG Filaggrin yes no 3 0.017103 33.204 By MS/MS By MS/MS 1 1 0.098161 0.078752 78.653 2 Median NaN NaN NaN 0 0 Median 0.1541 0.13734 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.062527 0.045157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 623130 543190 79935 0 0 0 365270 305670 59603 0 0 0 257860 237530 20332 0 0 0 0 0 0 + 13698 762 14253 69819;69820 70589;70590 70589 2 HSGNITFDEIVNIAR LKEPPRDRKKQKNIKHSGNITFDEIVNIAR HSGNITFDEIVNIARQMRHRSLARELSGTI K H S A R Q 1 1 2 1 0 0 1 1 1 3 0 0 0 1 0 1 1 0 0 1 0 0 15 0 1684.8533 P30050 P30050 100 114 RPL12 60S ribosomal protein L12 yes yes 2;3 1.6624E-35 210.15 By MS/MS By MS/MS By matching 1 2 1 1.1432 1.0799 14.33 4 Median NaN NaN NaN 0 0 Median 1.0918 0.91103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1388 1.2053 7.0278 2 0 Median 1.3522 1.0167 NaN 1 0 Median 88475000 40030000 48445000 0 0 0 766830 395750 371080 0 0 0 0 0 0 86179000 38944000 47236000 1529300 691110 838160 13699 2185 14254 69821;69822;69823;69824 70591;70592;70593;70594;70595;70596 70595 6 HSGPNSADSANDGFVR EVFKSHRTEMDWVLKHSGPNSADSANDGFV SGPNSADSANDGFVRLRGLPFGCTKEEIVQ K H S V R L 2 1 2 2 0 0 0 2 1 0 0 0 0 1 1 3 0 0 0 1 0 0 16 0 1629.7132 P52597 P52597 99 114 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3 7.2523E-36 207.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 6 5 7 8 0.89285 0.86645 11.196 35 Median 0.94689 0.96634 17.166 3 0 Median 1.0265 0.88488 12.004 6 0 Median 0.83208 0.83389 10.658 6 0 Median 1.0004 0.87976 6.7971 5 0 Median 0.77647 0.78014 8.7365 7 0 Median 1.0723 0.8694 9.9614 8 0 Median 130320000 69040000 61277000 5958800 2933800 3025100 13230000 6152100 7078400 29047000 15762000 13285000 16780000 8506600 8273100 55666000 30811000 24855000 9635600 4874800 4760800 13700 2452 14255 69825;69826;69827;69828;69829;69830;69831;69832;69833;69834;69835;69836;69837;69838;69839;69840;69841;69842;69843;69844;69845;69846;69847;69848;69849;69850;69851;69852;69853;69854;69855;69856;69857;69858;69859 70597;70598;70599;70600;70601;70602;70603;70604;70605;70606;70607;70608;70609;70610;70611;70612;70613;70614;70615;70616;70617;70618;70619;70620;70621;70622;70623;70624;70625;70626;70627;70628;70629;70630;70631 70610 35 HSHAVSTAAMTR VRLSSPSIKDLPAGRHSHAVSTAAMTRSSV AGRHSHAVSTAAMTRSSVGAGEPRMAPVCE R H S T R S 3 1 0 0 0 0 0 0 2 0 0 0 1 0 0 2 2 0 0 1 0 0 12 0 1267.6092 A6NEM2;P51610 A6NEM2 1233 1244 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 0.027479 21.55 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1028 1.0391 5.8243 4 Median NaN NaN NaN 0 0 Median 1.1374 0.99777 NaN 1 0 Median 1.0519 1.1213 NaN 1 0 Median 1.122 0.99929 NaN 1 0 Median 1.084 1.0804 NaN 1 0 Median NaN NaN NaN 0 0 Median 1054600 510100 544510 0 0 0 393700 174860 218850 385760 199330 186430 105750 62555 43193 169410 73362 96045 0 0 0 13701 509;2438 14256 69860;69861;69862;69863 70632;70633 70633 2 HSHPLDSNQTSDVLR LHVPSVQSDELLHSKHSHPLDSNQTSDVLR HSHPLDSNQTSDVLRFVLEQYNALSWLTCD K H S L R F 0 1 1 2 0 1 0 0 2 0 2 0 0 0 1 3 1 0 0 1 0 0 15 0 1704.818 Q9UHV7 Q9UHV7 2117 2131 MED13 Mediator of RNA polymerase II transcription subunit 13 yes yes 3 0.0072618 35.891 By MS/MS 1 0.6836 0.75965 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6836 0.75965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1316200 687960 628280 0 0 0 0 0 0 1316200 687960 628280 0 0 0 0 0 0 0 0 0 13702 4283 14257 69864 70634 70634 1 HSISGPISTSKPLTALSDK PMKTPPAAAVSPMQRHSISGPISTSKPLTA GPISTSKPLTALSDKRPNYGEIPVQEHLLR R H S D K R 1 0 0 1 0 0 0 1 1 2 2 2 0 0 2 5 2 0 0 0 0 0 19 1 1938.0422 A0A494C1J1;Q69YQ0 A0A494C1J1 905 923 SPECC1L Cytospin-A yes no 3 4.471E-18 133.93 By MS/MS 1 0.64435 0.61379 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64435 0.61379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6626400 3499800 3126500 0 0 0 0 0 0 0 0 0 6626400 3499800 3126500 0 0 0 0 0 0 13703 469 14258 69865 70635 70635 1 HSLAEILR AHVKRPDLHKKTQSKHSLAEILRSEYSSGM HKKTQSKHSLAEILRSEYSSGMEADIAKVK K H S L R S 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 937.53451 F8WAJ0;Q9H8H2 F8WAJ0 676 683 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 2 0.024929 63.48 By MS/MS 1 1.3092 1.3734 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3092 1.3734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4951200 2103200 2848000 0 0 0 0 0 0 4951200 2103200 2848000 0 0 0 0 0 0 0 0 0 13704 1092 14259 69866 70636 70636 1 HSLAFVVR RRLEVKPHALELPDKHSLAFVVRIERIDGV ALELPDKHSLAFVVRIERIDGVSLLVQRTI K H S V R I 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 8 0 927.52904 Q6DKI1;R4GMU7 Q6DKI1 94 101 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.0025526 107.32 By MS/MS By MS/MS 1 2 1.3679 1.0935 5.1508 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0201 1.025 NaN 1 0 Median 1.387 1.114 2.6236 2 0 Median 56473000 24889000 31585000 0 0 0 0 0 0 0 0 0 0 0 0 10565000 5304400 5260200 45909000 19584000 26325000 13705 3132 14260 69867;69868;69869 70637;70638;70639;70640;70641 70641 5 HSLASSEYPVR SDPKLAVLITNSNVRHSLASSEYPVRRRQC SNVRHSLASSEYPVRRRQCEEVARALGKES R H S V R R 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 11 0 1244.6149 P51570 P51570 229 239 GALK1 Galactokinase yes yes 2;3 0.00015157 91.867 By MS/MS By MS/MS 2 2 0.98101 0.91751 19.626 4 Median 0.89559 0.90956 13.319 2 0 Median 1.1938 1.0314 28.637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9610800 4154000 5456800 2967000 1439900 1527100 6643900 2714100 3929800 0 0 0 0 0 0 0 0 0 0 0 0 13706 2434 14261 69870;69871;69872;69873 70642;70643;70644;70645;70646;70647;70648 70647 7 HSLASSEYPVRR SDPKLAVLITNSNVRHSLASSEYPVRRRQC NVRHSLASSEYPVRRRQCEEVARALGKESL R H S R R R 1 2 0 0 0 0 1 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 12 1 1400.7161 P51570 P51570 229 240 GALK1 Galactokinase yes yes 3 0.046961 14.258 By MS/MS By matching 1 1 1.0096 1.0008 18.237 2 Median 0.83606 0.87968 NaN 1 0 Median 1.2191 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2425900 1228600 1197200 1797800 959520 838250 628080 269080 358990 0 0 0 0 0 0 0 0 0 0 0 0 13707 2434 14262 69874;69875 70649 70649 1 HSLLQTLYK VTKPNSALESCSFARHSLLQTLYKV_____ SCSFARHSLLQTLYKV______________ R H S Y K V 0 0 0 0 0 1 0 0 1 0 3 1 0 0 0 1 1 0 1 0 0 0 9 0 1101.6182 P46060 P46060 578 586 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 2.5544E-16 189.82 By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.2268 1.1367 14.498 6 Median 1.3096 1.2848 NaN 1 0 Median 1.2678 1.1078 NaN 1 0 Median 1.1867 1.1725 0.73835 2 0 Median 1.2817 1.0885 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0055 0.84014 NaN 1 0 Median 53745000 24274000 29471000 2315400 1026800 1288600 6271500 2849700 3421800 38606000 17501000 21105000 6065900 2593700 3472200 0 0 0 485680 303080 182600 13708 2336 14263 69876;69877;69878;69879;69880;69881 70650;70651;70652;70653 70650 4 HSLLQTLYKV VTKPNSALESCSFARHSLLQTLYKV_____ CSFARHSLLQTLYKV_______________ R H S K V - 0 0 0 0 0 1 0 0 1 0 3 1 0 0 0 1 1 0 1 1 0 0 10 1 1200.6867 P46060 P46060 578 587 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.0129 45.68 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2416 1.2161 77.527 4 Median 1.344 1.2468 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44129 0.44161 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.147 1.1861 NaN 1 0 Median 3.5449 2.9412 NaN 1 0 Median 31332000 17799000 13532000 6262800 2683000 3579800 0 0 0 20393000 13278000 7114700 0 0 0 4223800 1748000 2475800 452420 90281 362140 13709 2336 14264 69882;69883;69884;69885 70654;70655 70655 2 HSLNSSSASTTEPDFQK EVPFDVPELWYEDEKHSLNSSSASTTEPDF LNSSSASTTEPDFQKDILIACRLNQKKGAY K H S Q K D 1 0 1 1 0 1 1 0 1 0 1 1 0 1 1 5 2 0 0 0 0 0 17 0 1834.8333 P42704 P42704 1021 1037 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 8.4761E-14 131.69 By MS/MS By MS/MS 2 1 1.3156 1.1135 15.429 3 Median NaN NaN NaN 0 0 Median 1.1718 0.99337 16.141 2 0 Median NaN NaN NaN 0 0 Median 1.418 1.1891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17802000 8058200 9744200 0 0 0 17022000 7756700 9265400 0 0 0 780350 301470 478880 0 0 0 0 0 0 13710 2315 14265 69886;69887;69888 70656;70657;70658;70659;70660 70656 5 HSLPSAYR HSSSKSRSRSHSKAKHSLPSAYRTVRRSRS RSHSKAKHSLPSAYRTVRRSRSRSRSPRRR K H S Y R T 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 0 8 0 929.47191 Q12872 Q12872 790 797 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 2 0.054439 33.797 By MS/MS 1 1.2506 1.3341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2506 1.3341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 425040 193720 231320 0 0 0 0 0 0 425040 193720 231320 0 0 0 0 0 0 0 0 0 13711 2765 14266 69889 70661 70661 1 HSMDLSYALETVLNK TQMFPEGATPAEITKHSMDLSYALETVLNK HSMDLSYALETVLNKQFPSSPQDVLGELQF K H S N K Q 1 0 1 1 0 0 1 0 1 0 3 1 1 0 0 2 1 0 1 1 0 0 15 0 1719.8502 A2A2Q9;Q9Y312 A2A2Q9 228 242 AAR2 Protein AAR2 homolog yes no 2 7.2842E-05 82.261 By MS/MS By matching 1 1 1.1388 0.96525 19.978 2 Median NaN NaN NaN 0 0 Median 0.97886 0.83809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3249 1.1117 NaN 1 0 Median 5729600 2926700 2802900 0 0 0 4926800 2603000 2323800 0 0 0 0 0 0 0 0 0 802770 323650 479120 13712 497 14267 69890;69891 70662 70662 1 HSMGPGGYGDNLGGGQMYSPR LNGDSYSASQVESLRHSMGPGGYGDNLGGG GYGDNLGGGQMYSPREMRANGSWQEAVTPS R H S P R E 0 1 1 1 0 1 0 7 1 0 1 0 2 0 2 2 0 0 2 0 0 0 21 0 2136.9106 P40425 P40425 377 397 PBX2 Pre-B-cell leukemia transcription factor 2 yes yes 3 1.4102E-12 81.356 By MS/MS By matching 1 2 1.3328 1.1597 27.7 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72568 0.72225 NaN 1 0 Median 1.3449 1.1668 0.86385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10253000 5300800 4952200 0 0 0 0 0 0 7036900 3947800 3089100 3216200 1353000 1863200 0 0 0 0 0 0 13713 2286 14268 69892;69893;69894 70663;70664 70664 2 HSMNILNR RFGKRGLAVNMVDSKHSMNILNRIQEHFNK VNMVDSKHSMNILNRIQEHFNKKIERLDTD K H S N R I 0 1 2 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 983.49708 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 446 453 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 0.0058623 84.244 By MS/MS By MS/MS By MS/MS 1 1 1 1.1427 0.9873 5.9806 3 Median NaN NaN NaN 0 0 Median 1.2482 1.067 NaN 1 1 Median 0.9038 0.94859 NaN 1 0 Median 1.1427 0.9873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6775900 3211400 3564500 0 0 0 3116900 1365800 1751100 2592000 1329800 1262200 1066900 515730 551220 0 0 0 0 0 0 13714 4121;1225 14269 69895;69896;69897 70665;70666;70667;70668 70666 4 HSNLMLEELDKAQEDILK KKNSLRVEGDNIYVRHSNLMLEELDKAQED LMLEELDKAQEDILKHQASISELKRNFMES R H S L K H 1 0 1 2 0 1 3 0 1 1 4 2 1 0 0 1 0 0 0 0 0 0 18 1 2125.0725 O43491;Q6ZSX4;H0Y5B0;E9PMV8 O43491 626 643 EPB41L2 Band 4.1-like protein 2 yes no 3 0.00084627 32.55 By MS/MS By MS/MS 1 1 0.87537 0.96264 9.9036 2 Median 0.97709 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78423 0.89754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5762300 2788800 2973500 2433700 1025200 1408400 0 0 0 3328600 1763500 1565100 0 0 0 0 0 0 0 0 0 13715 1573 14270 69898;69899 70669;70670;70671 70671 3 HSNLVQLLGVIVEEK AQAFLAEASVMTQLRHSNLVQLLGVIVEEK HSNLVQLLGVIVEEKGGLYIVTEYMAKGSL R H S E K G 0 0 1 0 0 1 2 1 1 1 3 1 0 0 0 1 0 0 0 3 0 0 15 0 1676.9461 P41240 P41240 245 259 CSK Tyrosine-protein kinase CSK yes yes 2;3 1.5708E-25 139.78 By MS/MS By MS/MS By matching 3 3 1 1.2203 1.0682 13.106 6 Median NaN NaN NaN 0 0 Median 1.1835 1.0062 3.6572 3 1 Median 1.2029 1.1845 14.944 2 0 Median 1.5041 1.3391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23057000 10211000 12846000 0 0 0 13102000 5687300 7414700 9805500 4466600 5338900 149980 57359 92626 0 0 0 0 0 0 13716 2300 14271 69900;69901;69902;69903;69904;69905;69906 70672;70673;70674;70675 70674 4 HSNSNSVDDTIVALNMR IAKPIPQTPESAGNKHSNSNSVDDTIVALN NSNSVDDTIVALNMRAALRNGLEGSSEETS K H S M R A 1 1 3 2 0 0 0 0 1 1 1 0 1 0 0 3 1 0 0 2 0 0 17 0 1871.8796 P52948;A0A3B3ITD8 P52948 678 694 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 1.4776E-39 159.08 By MS/MS By MS/MS By matching 2 2 1 1.111 1.1696 11.507 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97303 1.0314 17.793 2 1 Median 1.3331 1.1434 7.5058 2 0 Median 1.111 1.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median 41262000 18793000 22469000 0 0 0 0 0 0 35936000 16276000 19660000 2353900 966180 1387700 2972200 1551000 1421200 0 0 0 13717 2462 14272 69907;69908;69909;69910;69911 70676;70677;70678;70679 70678 4 HSNVNLTIFTAR PCPDCAGEVAEFLARHSNVNLTIFTARLYY LARHSNVNLTIFTARLYYFQYPCYQEGLRS R H S A R L 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1371.7259 Q9NRW3 Q9NRW3 111 122 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C no no 2;3 9.7335E-08 126.19 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 3 1 1.0407 0.98415 26.708 8 Median 0.96862 0.91805 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0979 1.055 16.173 3 2 Median 1.8326 1.5164 NaN 1 1 Median 1.1112 1.1759 44.426 2 1 Median 0.98637 0.80086 NaN 1 0 Median 61892000 29133000 32759000 9861600 4526400 5335200 0 0 0 26523000 11746000 14776000 1795600 630670 1164900 22403000 11515000 10888000 1309200 714940 594220 13718 4090 14273 69912;69913;69914;69915;69916;69917;69918;69919;69920 70680;70681;70682;70683;70684;70685;70686;70687;70688;70689 70684 10 HSNVVILTTSNITEK RVVNAVLTQIDQIKRHSNVVILTTSNITEK HSNVVILTTSNITEKIDVAFVDRADIKQYI R H S E K I 0 0 2 0 0 0 1 0 1 2 1 1 0 0 0 2 3 0 0 2 0 0 15 0 1654.889 Q15645 Q15645 290 304 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2;3 9.197E-05 73.881 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1597 1.0672 7.7697 6 Median 1.1321 1.0475 5.0437 2 0 Median 1.2782 1.097 14.682 2 0 Median 1.0681 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.33 1.1397 NaN 1 0 Median 42345000 18320000 24025000 29585000 12258000 17327000 5708400 2511000 3197400 5813700 2956900 2856800 0 0 0 0 0 0 1237800 594270 643510 13719 2960 14274 69921;69922;69923;69924;69925;69926 70690;70691;70692;70693;70694 70690 5 HSPLTQMGPAK KGSPKNVESFASMLRHSPLTQMGPAKDKLV SMLRHSPLTQMGPAKDKLVIGRIFHIVEND R H S A K D 1 0 0 0 0 1 0 1 1 0 1 1 1 0 2 1 1 0 0 0 0 0 11 0 1165.5914 H0YC42;U3KQQ8;Q9Y2Q9;H0YAT2;H7C5V3;E5RGC7 H0YC42 200 210 MRPS28 28S ribosomal protein S28, mitochondrial no no 2 0.021954 34.387 By MS/MS By MS/MS 1 1 0.75597 0.68207 34.763 2 Median NaN NaN NaN 0 0 Median 0.61829 0.53343 NaN 1 0 Median 0.9243 0.87214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3213500 1886400 1327100 0 0 0 2274300 1481100 793140 939220 405310 533910 0 0 0 0 0 0 0 0 0 13720 1172;4387 14275 69927;69928 70695;70696 70696 2 HSPSIHQSVVAVSR VYVDQVDEDIVAVTRHSPSIHQSVVAVSRT RHSPSIHQSVVAVSRTAFRNPKTSFYSKEV R H S S R T 1 1 0 0 0 1 0 0 2 1 0 0 0 0 1 4 0 0 0 3 0 0 14 0 1502.7954 P35573 P35573 735 748 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 8.1229E-06 94.551 By MS/MS By MS/MS By MS/MS 2 3 2 0.78931 0.68377 54.133 4 Median 0.38256 0.35909 NaN 1 1 Median 1.2024 1.0279 4.7413 2 1 Median NaN NaN NaN 0 0 Median 0.5356 0.47035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21268000 13323000 7944900 11178000 7989500 3188500 7791700 3404600 4387100 0 0 0 2298100 1928800 369360 0 0 0 0 0 0 13721 2243 14276 69929;69930;69931;69932;69933;69934;69935 70697;70698;70699;70700;70701;70702;70703 70697 7 HSPTEDEESAKAEADAYIR PEEDGEEHVCVSASKHSPTEDEESAKAEAD EDEESAKAEADAYIREKRESVASGDDRAEE K H S I R E 4 1 0 2 0 0 4 0 1 1 0 1 0 0 1 2 1 0 1 0 0 0 19 1 2117.9502 P46821 P46821 969 987 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.00063502 31.818 By matching By MS/MS 1 1 0.714 0.78168 110.14 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28895 0.35876 NaN 1 0 Median 1.7643 1.7032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6293400 4141000 2152400 0 0 0 0 0 0 5145700 3719000 1426800 1147600 422010 725630 0 0 0 0 0 0 13722 2347 14277 69936;69937 70704 70704 1 HSQAVEELAEQLEQTK EAKTHEAQIQEMRQKHSQAVEELAEQLEQT SQAVEELAEQLEQTKRVKANLEKAKQTLEN K H S T K R 2 0 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16 0 1838.901 P35579 P35579 1194 1209 MYH9 Myosin-9 yes yes 3 3.7069E-05 58.159 By MS/MS By MS/MS 1 2 0.99711 0.88384 13.959 3 Median 1.0636 1.0251 NaN 1 0 Median 0.92817 0.82792 9.2433 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14661000 7026000 7634900 6964500 3424400 3540100 7696300 3601500 4094800 0 0 0 0 0 0 0 0 0 0 0 0 13723 2244 14278 69938;69939;69940 70705;70706 70706 1 HSQAVEELAEQLEQTKR EAKTHEAQIQEMRQKHSQAVEELAEQLEQT QAVEELAEQLEQTKRVKANLEKAKQTLENE K H S K R V 2 1 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 17 1 1995.0021 P35579 P35579 1194 1210 MYH9 Myosin-9 yes yes 3;4 2.7518E-32 186.94 By MS/MS By MS/MS By MS/MS 2 2 1 1.0404 0.97665 36.348 5 Median 1.2305 1.226 3.6271 2 0 Median 1.0397 0.96755 1.3244 2 0 Median 0.42213 0.50568 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 229330000 110190000 119140000 117390000 50766000 66626000 78639000 36640000 42000000 33303000 22783000 10519000 0 0 0 0 0 0 0 0 0 13724 2244 14279 69941;69942;69943;69944;69945 70707;70708;70709;70710;70711;70712;70713;70714;70715;70716;70717;70718;70719 70713 13 HSQEELLQR PALIWQQQRELAELRHSQEELLQRLCTQLE ELAELRHSQEELLQRLCTQLEGLQSTVTGH R H S Q R L 0 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1138.5731 Q6P2E9 Q6P2E9 966 974 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.0073226 51.854 By MS/MS 1 0.7631 0.83278 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7631 0.83278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1944900 901000 1043900 0 0 0 0 0 0 1944900 901000 1043900 0 0 0 0 0 0 0 0 0 13725 3155 14280 69946 70720 70720 1 HSQELPAILDDTTLSGSDR LKEDTLQFLIKVVSRHSQELPAILDDTTLS LPAILDDTTLSGSDRNAHLNALKMNCYALI R H S D R N 1 1 0 3 0 1 1 1 1 1 3 0 0 0 1 3 2 0 0 0 0 0 19 0 2053.9916 Q15021;F5GZK7 Q15021 92 110 NCAPD2 Condensin complex subunit 1 yes no 2;3 2.9883E-08 74.953 By MS/MS 2 0.6589 0.63639 19.302 2 Median 0.6589 0.63639 19.302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9377800 4945600 4432200 9377800 4945600 4432200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13726 2915 14281 69947;69948 70721;70722 70722 2 HSQFIGYPITLFVEK TEYLEERRIKEIVKKHSQFIGYPITLFVEK HSQFIGYPITLFVEKERDKEVSDDEAEEKE K H S E K E 0 0 0 0 0 1 1 1 1 2 1 1 0 2 1 1 1 0 1 1 0 0 15 0 1777.9403 P07900;G3V2J8;Q58FG0 P07900 210 224 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2;3 1.145E-46 226.17 By MS/MS By MS/MS By MS/MS By matching By matching 3 7 2 3 2 0.99015 0.90831 35.926 16 Median 1.0825 0.99001 4.8069 3 0 Median 0.99015 0.86692 55.778 6 0 Median 0.92061 0.99926 0.23176 2 0 Median 0.95674 0.83518 11.757 3 0 Median NaN NaN NaN 0 0 Median 0.81972 0.7075 33.73 2 0 Median 124300000 61417000 62882000 46483000 22213000 24270000 70575000 35440000 35135000 6661300 3494300 3167000 339630 145380 194240 0 0 0 240260 124080 116180 13727 1894 14282 69949;69950;69951;69952;69953;69954;69955;69956;69957;69958;69959;69960;69961;69962;69963;69964;69965 70723;70724;70725;70726;70727;70728;70729;70730;70731;70732;70733;70734;70735;70736;70737;70738;70739;70740;70741;70742;70743;70744;70745;70746;70747;70748;70749;70750 70742 28 HSQFIGYPITLFVEKER TEYLEERRIKEIVKKHSQFIGYPITLFVEK QFIGYPITLFVEKERDKEVSDDEAEEKEDK K H S E R D 0 1 0 0 0 1 2 1 1 2 1 1 0 2 1 1 1 0 1 1 0 0 17 1 2063.084 P07900;G3V2J8 P07900 210 226 HSP90AA1 Heat shock protein HSP 90-alpha yes no 2;3;4 2.7224E-14 112.3 By MS/MS 3 1.0569 1.0856 8.1437 3 Median 1.0569 1.0856 8.1437 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16531000 8061500 8469100 16531000 8061500 8469100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13728 1894 14283 69966;69967;69968 70751;70752;70753;70754;70755;70756;70757 70754 7 HSQFLGYPITLYLEK TEYLEEMQVKEVVEKHSQFLGYPITLYLEK HSQFLGYPITLYLEKEREKEISDGKAEEEK K H S E K E 0 0 0 0 0 1 1 1 1 1 3 1 0 1 1 1 1 0 2 0 0 0 15 0 1807.9509 Q58FF8 Q58FF8 127 141 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 2;3 4.24E-160 300.4 By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 1.0343 0.92068 10.832 12 Median 1.0435 0.9368 11.565 4 0 Median 1.0414 0.90694 4.4303 4 1 Median 0.99098 1.0883 0.12382 2 0 Median 1.1582 1.0105 14.71 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 204180000 99961000 104220000 47423000 23003000 24420000 146010000 71450000 74559000 9710000 5109000 4601000 1042800 399300 643540 0 0 0 0 0 0 13729 3040 14284 69969;69970;69971;69972;69973;69974;69975;69976;69977;69978;69979;69980 70758;70759;70760;70761;70762;70763;70764;70765;70766;70767;70768;70769;70770;70771;70772;70773;70774;70775;70776;70777;70778;70779;70780;70781;70782;70783;70784 70775 27 HSQFLGYPITLYLEKER TEYLEEMQVKEVVEKHSQFLGYPITLYLEK QFLGYPITLYLEKEREKEISDGKAEEEKGE K H S E R E 0 1 0 0 0 1 2 1 1 1 3 1 0 1 1 1 1 0 2 0 0 0 17 1 2093.0946 Q58FF8 Q58FF8 127 143 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 2;3;4 2.0309E-13 107.37 By MS/MS 3 1.0688 1.099 6.0253 3 Median 1.0688 1.099 6.0253 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30817000 14161000 16656000 30817000 14161000 16656000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13730 3040 14285 69981;69982;69983 70785;70786;70787;70788;70789;70790 70790 6 HSQYHVDGSLEK DHYKAKATRHIFLIRHSQYHVDGSLEKDRT LIRHSQYHVDGSLEKDRTLTPLGREQAELT R H S E K D 0 0 0 1 0 1 1 1 2 0 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1398.6528 Q96HS1 Q96HS1 105 116 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 1.0117E-06 107.09 By matching By MS/MS By matching By matching 1 1 1 1 1.4016 1.2745 3.6943 4 Median 1.2737 1.2604 NaN 1 0 Median 1.4879 1.2512 NaN 1 0 Median 1.3204 1.2886 NaN 1 0 Median 1.6052 1.3579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6812000 2906700 3905300 841030 364840 476200 3140000 1338500 1801500 1107100 532270 574800 1723900 671100 1052800 0 0 0 0 0 0 13731 3669 14286 69984;69985;69986;69987 70791;70792 70792 2 HSQYHVDGSLEKDR DHYKAKATRHIFLIRHSQYHVDGSLEKDRT RHSQYHVDGSLEKDRTLTPLGREQAELTGL R H S D R T 0 1 0 2 0 1 1 1 2 0 1 1 0 0 0 2 0 0 1 1 0 0 14 1 1669.7808 Q96HS1 Q96HS1 105 118 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 4 0.00016519 67.115 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.1724 1.1821 17.181 4 Median 0.99714 0.98039 NaN 1 0 Median 1.1473 1.0531 NaN 1 1 Median 1.198 1.3269 NaN 1 0 Median 1.4762 1.3931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3929500 1749200 2180300 555040 238360 316680 895610 438670 456930 528670 250930 277740 1950200 821270 1128900 0 0 0 0 0 0 13732 3669 14287 69988;69989;69990;69991 70793;70794 70794 2 HSRPIVTVWER QSVQTLSLWLIHHRKHSRPIVTVWERELRK HHRKHSRPIVTVWERELRKAKPNRKLTFLY K H S E R E 0 2 0 0 0 0 1 0 1 1 0 0 0 0 1 1 1 1 0 2 0 0 11 1 1378.747 Q96P16;A0A0C4DGQ6;K7EQR8 Q96P16 36 46 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 3 0.0011765 68.44 By MS/MS 2 1.1135 1.1622 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1135 1.1622 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5551600 2908800 2642800 0 0 0 0 0 0 5551600 2908800 2642800 0 0 0 0 0 0 0 0 0 13733 3709 14288 69992;69993 70795;70796 70795 2 HSSALGGASLGAR QAQNFFSSFTLMKLRHSSALGGASLGARHI LRHSSALGGASLGARHIGHLLPMDYSANAI R H S A R H 3 1 0 0 0 0 0 3 1 0 2 0 0 0 0 3 0 0 0 0 0 0 13 0 1182.6105 H7C3G9;Q9UJ70;C9JEV6;H7C286;H0YF44 H7C3G9 305 317 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.0039502 42.395 By MS/MS By MS/MS 1 1 0.89384 0.81407 11.873 2 Median 0.91475 0.88537 NaN 1 0 Median 0.8734 0.74851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1621000 723630 897400 1051000 476760 574250 570030 246880 323150 0 0 0 0 0 0 0 0 0 0 0 0 13734 1265 14289 69994;69995 70797;70798 70798 2 HSSLAGCQIINYR WSMEGESQPVKMFDRHSSLAGCQIINYRTD DRHSSLAGCQIINYRTDAKQKWLLLTGISA R H S Y R T 1 1 1 0 1 1 0 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 13 0 1517.7409 A0A087WVQ6;Q00610 A0A087WVQ6 149 161 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 2.9238E-22 160.36 By matching By MS/MS 1 5 1.3678 1.1598 12.665 5 Median 1.3678 1.3435 NaN 1 0 Median 1.3991 1.1549 13.805 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54680000 21734000 32945000 3129600 1296900 1832700 51550000 20438000 31112000 0 0 0 0 0 0 0 0 0 0 0 0 13735 44 14290 69996;69997;69998;69999;70000;70001 70799;70800;70801;70802 70801 4 HSSLITPLQAVAQR YRSYRHGDLPDIQIKHSSLITPLQAVAQRD KHSSLITPLQAVAQRDPIIAKQLFSSLFSG K H S Q R D 2 1 0 0 0 2 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 14 0 1519.8471 P78527 P78527 2787 2800 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 5.7701E-98 265.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 6 3 3 4 0.98818 0.94071 21.215 24 Median 0.87002 0.81887 9.5245 5 1 Median 1.2135 0.97187 8.8525 3 0 Median 0.80925 0.86344 20.038 6 0 Median 1.2216 1.0642 0.48037 3 0 Plateau 0.73509 0.75517 41.1 3 0 Median 1.4255 1.1686 11.288 4 0 Median 559170000 296210000 262960000 200020000 105280000 94734000 102150000 54245000 47903000 221110000 118550000 102560000 10806000 4783100 6023200 22800000 12398000 10402000 2292900 951670 1341200 13736 2647 14291 70002;70003;70004;70005;70006;70007;70008;70009;70010;70011;70012;70013;70014;70015;70016;70017;70018;70019;70020;70021;70022;70023;70024;70025 70803;70804;70805;70806;70807;70808;70809;70810;70811;70812;70813;70814;70815;70816;70817;70818;70819;70820;70821;70822;70823;70824;70825;70826;70827;70828;70829;70830;70831;70832;70833;70834;70835;70836;70837;70838;70839;70840;70841 70807 39 HSSLITPLQAVAQRDPIIAK YRSYRHGDLPDIQIKHSSLITPLQAVAQRD TPLQAVAQRDPIIAKQLFSSLFSGILKEMD K H S A K Q 3 1 0 1 0 2 0 0 1 3 2 1 0 0 2 2 1 0 0 1 0 0 20 1 2157.227 P78527 P78527 2787 2806 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3;4 1.1922E-19 131.31 By MS/MS By MS/MS By MS/MS 3 4 1 0.68493 0.77151 5.8924 8 Median 0.72068 0.7593 5.444 3 1 Median NaN NaN NaN 0 0 Median 0.66633 0.78483 7.4054 4 0 Median NaN NaN NaN 0 0 Median 0.65455 0.74032 NaN 1 0 Median NaN NaN NaN 0 0 Median 123820000 70187000 53628000 51359000 29099000 22260000 0 0 0 67765000 38619000 29146000 0 0 0 4690400 2469300 2221200 0 0 0 13737 2647 14292 70026;70027;70028;70029;70030;70031;70032;70033 70842;70843;70844;70845;70846;70847;70848;70849;70850;70851;70852;70853;70854;70855;70856 70849 15 HSSVYPTQEELEAVQNMVSHTER PMRIFVNDDRHVMAKHSSVYPTQEELEAVQ EELEAVQNMVSHTERALKAVSDWIDEQEKG K H S E R A 1 1 1 0 0 2 4 0 2 0 1 0 1 0 1 3 2 0 1 3 0 0 23 0 2670.2344 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6 Q12906 18 40 ILF3 Interleukin enhancer-binding factor 3 yes no 3;4 6.2444E-29 111.38 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 7 0.82922 0.79913 8.6642 15 Median NaN NaN NaN 0 0 Median 0.9536 0.8263 NaN 1 0 Median 0.77515 0.8241 6.8516 4 0 Median NaN NaN NaN 0 0 Median 0.74852 0.72493 6.6418 3 0 Plateau 0.96828 0.78088 10.5 7 0 Median 91812000 48922000 42890000 0 0 0 3827800 1848100 1979700 62251000 33418000 28833000 0 0 0 15993000 8742600 7250500 9740400 4913300 4827100 13738 2769 14293;14294 70034;70035;70036;70037;70038;70039;70040;70041;70042;70043;70044;70045;70046;70047;70048 70857;70858;70859;70860;70861;70862;70863;70864;70865;70866;70867;70868;70869;70870 70866 1486 14 HSTEMLHNLNQQR ASCGPSGCYTYQVSRHSTEMLHNLNQQRKN SRHSTEMLHNLNQQRKNGGRFCDVLLRVGD R H S Q R K 0 1 2 0 0 2 1 0 2 0 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1606.7634 Q9HBE1 Q9HBE1 22 34 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes yes 3 0.0032354 35.204 By MS/MS 1 0.92872 0.98527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92872 0.98527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1869400 976180 893230 0 0 0 0 0 0 1869400 976180 893230 0 0 0 0 0 0 0 0 0 13739 4017 14295 70049 70871 70871 1 HSTLDFMLGAK ______________________________ AAARHSTLDFMLGAKADGETILKGLQSIFQ R H S A K A 1 0 0 1 0 0 0 1 1 0 2 1 1 1 0 1 1 0 0 0 0 0 11 0 1218.6067 P52788 P52788 6 16 SMS Spermine synthase yes yes 2;3 2.4136E-05 155.84 By MS/MS By MS/MS By MS/MS By matching 4 1 2 1 1.1308 1.069 23.895 8 Median 1.1308 1.0475 20.314 4 0 Median 1.0472 0.89229 NaN 1 0 Median 1.4666 1.4464 10.502 2 0 Median NaN NaN NaN 0 0 Median 1.0841 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median 232180000 105940000 126240000 194770000 88238000 106530000 16710000 8358900 8350900 17764000 7886200 9878200 0 0 0 2933700 1453900 1479800 0 0 0 13740 2459 14296;14297 70050;70051;70052;70053;70054;70055;70056;70057 70872;70873;70874;70875;70876;70877;70878;70879;70880;70881 70876 1151 10 HSTPHAAFQPNSQIGEEMSQNSFIK VKRLKGALMLENLQKHSTPHAAFQPNSQIG NSQIGEEMSQNSFIKQYLEKQQELLRQRLE K H S I K Q 2 0 2 0 0 3 2 1 2 2 0 1 1 2 2 4 1 0 0 0 0 0 25 0 2784.2926 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 56 80 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 4 2.3079E-08 43.162 By MS/MS 1 0.58928 0.65626 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58928 0.65626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5267400 3367500 1899900 0 0 0 0 0 0 5267400 3367500 1899900 0 0 0 0 0 0 0 0 0 13741 4560 14298 70058 70882 70882 1 HSTQSLFEYMK GLVVSLGGLTESTIRHSTQSLFEYMKGIQS STIRHSTQSLFEYMKGIQSDPQALGSFSGT R H S M K G 0 0 0 0 0 1 1 0 1 0 1 1 1 1 0 2 1 0 1 0 0 0 11 0 1369.6336 Q9BTW9;J3KR97;A0A0J9YVR1;A0A0J9YWI5;I3L120;A0A0J9YXU4 Q9BTW9 1000 1010 TBCD Tubulin-specific chaperone D yes no 2 0.022183 54.982 By MS/MS 2 1.2225 1.1894 NaN 1 Median 1.2225 1.1894 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6256400 2719600 3536700 6256400 2719600 3536700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13742 1324 14299 70059;70060 70883;70884 70884 2 HSTSGTDEGEDGDEPDDGSNDVVDLLPR MQGQSPPAPTRGISKHSTSGTDEGEDGDEP EPDDGSNDVVDLLPRTEISDKITSELVSKI K H S P R T 0 1 1 7 0 0 3 4 1 0 2 0 0 0 2 3 2 0 0 2 0 0 28 0 2927.2177 Q14008 Q14008 827 854 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 8.3329E-26 83.881 By MS/MS 1 0.69234 0.76647 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69234 0.76647 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3697200 2232800 1464400 0 0 0 0 0 0 3697200 2232800 1464400 0 0 0 0 0 0 0 0 0 13743 2850 14300 70061 70885 70885 1 HSTVFDNLPNPEDR FKCLMEGAGDVAFVKHSTVFDNLPNPEDRK KHSTVFDNLPNPEDRKNYELLCGDNTRKSV K H S D R K 0 1 2 2 0 0 1 0 1 0 1 0 0 1 2 1 1 0 0 1 0 0 14 0 1639.759 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 230 243 yes no 3 3.562E-05 80.96 By MS/MS 2 0.11278 0.10811 159.43 2 Median 0.11278 0.10811 159.43 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16070000 14805000 1265500 16070000 14805000 1265500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13744 769 14301 70062;70063 70886;70887;70888 70886 3 HSTVFDNLPNPEDRK FKCLMEGAGDVAFVKHSTVFDNLPNPEDRK HSTVFDNLPNPEDRKNYELLCGDNTRKSVD K H S R K N 0 1 2 2 0 0 1 0 1 0 1 1 0 1 2 1 1 0 0 1 0 0 15 1 1767.854 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 230 244 yes no 3 1.457E-07 84.753 By MS/MS 1 0.18023 0.18525 NaN 1 Median 0.18023 0.18525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18006000 13930000 4076200 18006000 13930000 4076200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13745 769 14302 70064 70889;70890 70889 2 HSVATAADLELK LEAVLHLVIASSDTRHSVATAADLELKSKQ DTRHSVATAADLELKSKQSLIDWNNPAIIN R H S L K S 3 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1253.6616 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 274 285 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2;3 8.8955E-22 199.68 By MS/MS By MS/MS 2 2 1.0525 0.9695 5.7152 4 Median 0.95056 0.91543 5.0145 2 0 Median 1.126 0.99662 0.8007 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20673000 10426000 10247000 13429000 7204400 6224500 7243600 3221300 4022300 0 0 0 0 0 0 0 0 0 0 0 0 13746 3116 14303 70065;70066;70067;70068 70891;70892;70893;70894;70895;70896 70892 6 HSVDLIGRPFGSK VQRGAQTQTRHGVLRHSVDLIGRPFGSKVT LRHSVDLIGRPFGSKVTCGRGGWVYVLHPT R H S S K V 0 1 0 1 0 0 0 2 1 1 1 1 0 1 1 2 0 0 0 1 0 0 13 1 1411.7572 Q96FX7 Q96FX7 45 57 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 3 0.0014055 57.425 By MS/MS 1 0.4172 0.41966 NaN 1 Median 0.4172 0.41966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14102000 9227900 4873700 14102000 9227900 4873700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13747 3650 14304 70069 70897 70897 1 HSVGVVIGR YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK DVPVPRHSVGVVIGRSGEMIKKIQNDAGVR R H S G R S 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 3 0 0 9 0 922.53485 Q92945;A0A087WTP3;M0R0I5 Q92945 332 340 KHSRP Far upstream element-binding protein 2 yes no 2 9.7882E-05 147.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 7 4 7 1.1988 1.0634 11.085 30 Median 1.1823 1.1986 8.8676 3 0 Median 1.2242 1.0597 9.084 4 0 Median 1.0324 1.0862 9.3628 5 0 Median 1.2525 1.073 11.068 7 0 Median 1.1029 1.1092 14.983 4 2 Median 1.2629 1.009 7.4516 7 0 Median 712010000 328180000 383820000 13629000 6452000 7177000 59289000 27423000 31866000 154590000 76216000 78377000 333080000 149380000 183690000 37783000 18153000 19629000 113640000 50559000 63079000 13748 3568 14305 70070;70071;70072;70073;70074;70075;70076;70077;70078;70079;70080;70081;70082;70083;70084;70085;70086;70087;70088;70089;70090;70091;70092;70093;70094;70095;70096;70097;70098;70099 70898;70899;70900;70901;70902;70903;70904;70905;70906;70907;70908;70909;70910;70911;70912;70913;70914;70915;70916;70917;70918;70919;70920;70921;70922;70923;70924;70925;70926;70927;70928;70929;70930;70931;70932;70933;70934;70935;70936;70937;70938;70939;70940;70941;70942;70943;70944;70945;70946;70947;70948;70949 70931 52 HSVIPPAAR VAGLRLRPRKTIRGKHSVIPPAARSGRRPG KTIRGKHSVIPPAARSGRRPGKKPHSTRRS K H S A R S 2 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 946.53485 Q9UIG0 Q9UIG0 1292 1300 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0012366 83.753 By MS/MS By MS/MS 2 2 1.0848 1.0261 16.484 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9054 0.95929 20.078 2 0 Median 1.2503 1.0732 16.913 2 0 Median 3610800 2007600 1603100 0 0 0 0 0 0 0 0 0 0 0 0 2818800 1661300 1157500 791960 346330 445620 13749 4290 14306 70100;70101;70102;70103 70950;70951 70950 2 HTAAPTDPADGPV FGYDAYVTFPVRQPRHTAAPTDPADGPV__ PRHTAAPTDPADGPV_______________ R H T P V - 3 0 0 2 0 0 0 1 1 0 0 0 0 0 3 0 2 0 0 1 0 0 13 0 1247.5782 Q04941 Q04941 140 152 PLP2 Proteolipid protein 2 yes yes 2 8.9389E-31 175.51 By MS/MS By MS/MS 1 3 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56683000 0 0 34998000 0 0 21685000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13750 2715 14307 70104;70105;70106;70107 70952;70953;70954;70955;70956 70956 5 HTAFIGDRN GVEIEEKIVDNLQSRHTAFIGDRN______ DNLQSRHTAFIGDRN_______________ R H T R N - 1 1 1 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 9 1 1029.4992 Q9HAB8 Q9HAB8 303 311 PPCS Phosphopantothenate--cysteine ligase yes yes 2 0.04248 36.395 By matching By MS/MS 1 1 1.2684 1.1499 0.13623 2 Median 1.186 1.151 NaN 1 0 Median 1.3564 1.1488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2498100 1128000 1370200 1283000 595570 687470 1215100 532400 682690 0 0 0 0 0 0 0 0 0 0 0 0 13751 4007 14308 70108;70109 70957 70957 1 HTAMVSWGGVSIPNSPFR NGTYSCSYVPRKPVKHTAMVSWGGVSIPNS MVSWGGVSIPNSPFRVNVGAGSHPNKVKVY K H T F R V 1 1 1 0 0 0 0 2 1 1 0 0 1 1 2 3 1 1 0 2 0 0 18 0 1941.952 P21333;Q60FE5;A0A087WWY3 P21333 743 760 FLNA Filamin-A no no 2;3 1.5323E-15 166.6 By MS/MS By MS/MS By matching 5 2 2 0.87887 0.85047 19.916 9 Median 0.87887 0.85047 8.1673 5 1 Median 0.77712 0.64717 0.25973 2 0 Median 0.98563 1.0952 11.207 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67302000 36664000 30638000 51369000 28110000 23259000 10844000 6083300 4760200 5089200 2470200 2619100 0 0 0 0 0 0 0 0 0 13752 2088;3120 14309;14310 70110;70111;70112;70113;70114;70115;70116;70117;70118 70958;70959;70960;70961;70962;70963;70964;70965;70966 70963 853 9 HTDDEMTGYVATR NEDCELKILDFGLARHTDDEMTGYVATRWY ARHTDDEMTGYVATRWYRAPEIMLNWMHYN R H T T R W 1 1 0 2 0 0 1 1 1 0 0 0 1 0 0 0 3 0 1 1 0 0 13 0 1494.6409 Q16539;B4E0K5;E7EX54 Q16539 174 186 MAPK14 Mitogen-activated protein kinase 14 yes no 3 0.0023446 36.944 By MS/MS By MS/MS 1 1 1.2674 1.1872 18.083 2 Median 1.3248 1.3491 NaN 1 0 Median 1.2124 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2352800 957820 1395000 1325100 571960 753120 1027800 385860 641910 0 0 0 0 0 0 0 0 0 0 0 0 13753 2987 14311 70119;70120 70967;70968 70968 2 HTDFLLPHER CHKDNLDLKAEGPERHTDFLLPHERASQDG EGPERHTDFLLPHERASQDGSGFSRILSML R H T E R A 0 1 0 1 0 0 1 0 2 0 2 0 0 1 1 0 1 0 0 0 0 0 10 0 1263.636 Q5VUA4 Q5VUA4 490 499 ZNF318 Zinc finger protein 318 yes yes 3 0.00032281 67.726 By MS/MS 1 0.65072 0.72312 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65072 0.72312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2604900 1674700 930200 0 0 0 0 0 0 2604900 1674700 930200 0 0 0 0 0 0 0 0 0 13754 3113 14312 70121 70969 70969 1 HTDNVIQWLNAMDEIGLPK DREQTRYKATGLHFRHTDNVIQWLNAMDEI VIQWLNAMDEIGLPKIFYPETTDIYDRKNM R H T P K I 1 0 2 2 0 1 1 1 1 2 2 1 1 0 1 0 1 1 0 1 0 0 19 0 2193.0888 P46940;A0A0J9YXZ5 P46940 112 130 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.015477 18.538 By MS/MS By MS/MS By matching 2 2 1 0.97532 0.86542 51.568 5 Median 0.76615 0.74483 21.221 2 0 Median 0.9939 0.87311 1.5755 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4396 2.4573 NaN 1 0 Median NaN NaN NaN 0 0 Median 5312000 2629900 2682100 1938800 1011000 927790 3002000 1501700 1500400 0 0 0 0 0 0 371120 117140 253980 0 0 0 13755 2350 14313 70122;70123;70124;70125;70126 70970;70971;70972;70973 70973 4 HTDPVPDPR VDQSILTGESVSVIKHTDPVPDPRAVNQDK SVSVIKHTDPVPDPRAVNQDKKNMLFSGTN K H T P R A 0 1 0 2 0 0 0 0 1 0 0 0 0 0 3 0 1 0 0 1 0 0 9 0 1032.4989 P16615;H7C5W9 P16615 190 198 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.026447 58.917 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13756 2031 14314 70127 70974 70974 1 HTEMIHNYMEHLER REAELKKEYNALHQRHTEMIHNYMEHLERT RHTEMIHNYMEHLERTKLHQLSGSDQLEST R H T E R T 0 1 1 0 0 0 3 0 3 1 1 0 2 0 0 0 1 0 1 0 0 0 14 0 1838.8192 A0A087X2D8;O60271 A0A087X2D8 163 176 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3;4 3.464E-09 142.38 By MS/MS By MS/MS 4 3 1.313 1.1523 13.897 7 Median 1.2154 1.1835 8.208 4 0 Median 1.3188 1.1523 21.412 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56686000 24651000 32035000 38095000 16404000 21691000 18591000 8246900 10344000 0 0 0 0 0 0 0 0 0 0 0 0 13757 134 14315;14316 70128;70129;70130;70131;70132;70133;70134 70975;70976;70977;70978;70979;70980;70981 70981 69 7 HTEMITTLK DELASLQVTMQQAQKHTEMITTLKKIRRFK MQQAQKHTEMITTLKKIRRFKVSQVIMEKS K H T L K K 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 3 0 0 0 0 0 9 0 1072.5587 O75475 O75475 393 401 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.0012859 83.206 By MS/MS By MS/MS By MS/MS 1 2 1 1.1258 0.95424 10.305 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81819 0.81853 NaN 1 0 Median 1.1687 1.0056 5.991 2 0 Median NaN NaN NaN 0 0 Median 1.1411 0.94469 NaN 1 0 Median 25832000 13406000 12426000 0 0 0 0 0 0 20749000 11070000 9679300 3783400 1715800 2067600 0 0 0 1298900 619700 679240 13758 1674 14317 70135;70136;70137;70138 70982;70983;70984;70985;70986;70987 70983 6 HTEMITTLKK DELASLQVTMQQAQKHTEMITTLKKIRRFK QQAQKHTEMITTLKKIRRFKVSQVIMEKST K H T K K I 0 0 0 0 0 0 1 0 1 1 1 2 1 0 0 0 3 0 0 0 0 0 10 1 1200.6536 O75475 O75475 393 402 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 0.00063877 59.426 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1.245 1.1496 16.116 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87412 0.97599 NaN 1 0 Median 1.264 1.209 3.6746 3 0 Median 0.76459 0.85502 NaN 1 0 Median 1.3066 1.174 21.302 2 0 Median 13817000 7161400 6655300 0 0 0 0 0 0 9724100 5257400 4466700 1294300 571010 723280 1592900 853330 739620 1205400 479640 725740 13759 1674 14318 70139;70140;70141;70142;70143;70144;70145 70988;70989;70990;70991;70992;70993;70994 70989 7 HTENEEDKVSSSSFR EELALYQIQLLKDLRHTENEEDKVSSSSFR HTENEEDKVSSSSFRQRMLGNLLRPPYERP R H T F R Q 0 1 1 1 0 0 3 0 1 0 0 1 0 1 0 4 1 0 0 1 0 0 15 1 1750.7758 Q13057;K7EQ60 Q13057 323 337 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 3 0.00013297 59.673 By MS/MS By MS/MS 1 1 1.1754 1.1273 17.412 2 Median 0.99222 0.99673 NaN 1 1 Median 1.3924 1.275 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9098500 4279300 4819200 5178400 2502200 2676200 3920000 1777100 2142900 0 0 0 0 0 0 0 0 0 0 0 0 13760 2783 14319 70146;70147 70995;70996 70996 2 HTFGLVQSK VTFVSGFLLFRSLPRHTFGLVQSKLFPFYF FRSLPRHTFGLVQSKLFPFYFHISMGCAFI R H T S K L 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 1015.5451 K7ELQ9;Q6UW68;K7ER05;K7EJQ9 K7ELQ9 44 52 TMEM205 Transmembrane protein 205 yes no 2 0.0034535 85.67 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13761 1379 14320 70148 70997 70997 1 HTFSGVASVESSSGEAFHVGK VAVPLPLHRAHYDLRHTFSGVASVESSSGE ASVESSSGEAFHVGKTPIVGQPSIPGGPVR R H T G K T 2 0 0 0 0 0 2 3 2 0 0 1 0 2 0 5 1 0 0 3 0 0 21 0 2118.997 CON__P12763 CON__P12763 313 333 yes yes 2;3;4 3.5163E-120 222.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 1 2 3 1 0.051779 0.044742 137.5 10 Median 0.025743 0.023649 173.98 5 5 Median 0.047532 0.0402 NaN 1 1 Median 0.047054 0.045499 53.202 2 2 Median 0.058058 0.049797 NaN 1 1 Median 0.1495 0.17078 NaN 1 1 Median NaN NaN NaN 0 0 Median 702990000 697470000 5515100 627890000 624060000 3825300 24804000 24171000 632520 30500000 29689000 810810 17541000 17401000 139760 2256300 2149600 106720 0 0 0 + 13762 755 14321 70149;70150;70151;70152;70153;70154;70155;70156;70157;70158;70159;70160;70161;70162;70163;70164;70165 70998;70999;71000;71001;71002;71003;71004;71005;71006;71007;71008;71009;71010;71011;71012;71013;71014;71015;71016;71017;71018;71019 71008 22 HTGPGILSMANAGPNTNGSQFFICTAK SIYGEKFEDENFILKHTGPGILSMANAGPN GPNTNGSQFFICTAKTEWLDGKHVVFGKVK K H T A K T 3 0 3 0 1 1 0 4 1 2 1 1 1 2 2 2 3 0 0 0 0 0 27 0 2790.3218 P62937;F8WE65;C9J5S7 P62937 92 118 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 3 3.0992E-69 202.17 By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 0.82288 0.72718 39.908 8 Median 0.62246 0.58826 NaN 1 0 Median 1.0096 0.86613 1.8429 2 0 Median 0.74246 0.70032 57.045 3 0 Plateau 0.96734 0.79927 8.0434 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166940000 92547000 74396000 7233600 4266800 2966800 13124000 6511400 6612900 143920000 80408000 63513000 2664000 1360700 1303300 0 0 0 0 0 0 13763 2611 14322;14323 70166;70167;70168;70169;70170;70171;70172;70173 71020;71021;71022;71023;71024 71023 1273 5 HTGPGLLSMANQGQNTNNSQFVITLK SIYGDKFEDENFDVKHTGPGLLSMANQGQN QGQNTNNSQFVITLKKAEHLDFKHVVFGFV K H T L K K 1 0 4 0 0 3 0 3 1 1 3 1 1 1 1 2 3 0 0 1 0 0 26 0 2769.3868 P49792 P49792 3152 3177 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 1.6153E-08 42.106 By MS/MS 1 0.84239 0.9381 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84239 0.9381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5378500 2982100 2396400 0 0 0 0 0 0 5378500 2982100 2396400 0 0 0 0 0 0 0 0 0 13764 2401 14324 70174 71025;71026 71025 2 HTGPNSPDTANDGFVR EVFKSNNVEMDWVLKHTGPNSPDTANDGFV TGPNSPDTANDGFVRLRGLPFGCSKEEIVQ K H T V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 1 2 1 2 0 0 1 0 0 16 0 1683.7601 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E5RGH4;H0YAQ2;P55795 P31943 99 114 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 1.6799E-86 254.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 8 10 17 14 0.8302 0.75673 27.601 57 Median 0.85862 0.81103 14.396 4 0 Median 0.94348 0.81297 7.5724 4 0 Median 0.61352 0.60508 56.718 8 0 Median 0.87788 0.75745 8.5418 10 0 Median 0.74404 0.75743 12.923 17 0 Median 0.93057 0.75796 19.898 14 0 Median 980590000 533130000 447460000 28117000 15659000 12458000 32372000 15962000 16410000 209760000 118640000 91127000 118450000 60498000 57952000 515950000 284350000 231600000 75937000 38027000 37910000 13765 1136;2502 14325 70175;70176;70177;70178;70179;70180;70181;70182;70183;70184;70185;70186;70187;70188;70189;70190;70191;70192;70193;70194;70195;70196;70197;70198;70199;70200;70201;70202;70203;70204;70205;70206;70207;70208;70209;70210;70211;70212;70213;70214;70215;70216;70217;70218;70219;70220;70221;70222;70223;70224;70225;70226;70227;70228;70229;70230;70231 71027;71028;71029;71030;71031;71032;71033;71034;71035;71036;71037;71038;71039;71040;71041;71042;71043;71044;71045;71046;71047;71048;71049;71050;71051;71052;71053;71054;71055;71056;71057;71058;71059;71060;71061;71062;71063;71064;71065;71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076;71077;71078;71079;71080;71081;71082;71083;71084;71085;71086;71087;71088;71089;71090;71091;71092;71093;71094;71095;71096;71097;71098;71099;71100;71101;71102;71103;71104;71105;71106;71107;71108;71109;71110;71111;71112;71113 71052 87 HTGYVGLK VQADAPHGVAWDSKKHTGYVGLKNQGATCY VAWDSKKHTGYVGLKNQGATCYMNSLLQTL K H T L K N 0 0 0 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 1 1 0 0 8 0 873.47085 Q93009;H3BND8;F5H2X1 Q93009 210 217 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0067369 69.998 By MS/MS By matching 1 1 1.1594 1.1131 4.6602 2 Median NaN NaN NaN 0 0 Median 1.2446 1.077 NaN 1 0 Median 1.08 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4469500 2199100 2270400 0 0 0 3416100 1626500 1789700 1053300 572600 480740 0 0 0 0 0 0 0 0 0 13766 3574 14326 70232;70233 71114;71115 71114 2 HTGYVIELQHVVK PGFKRLAWGQPVGLRHTGYVIELQHVVKGP LRHTGYVIELQHVVKGPSGCVESLEVTCRR R H T V K G 0 0 0 0 0 1 1 1 2 1 1 1 0 0 0 0 1 0 1 3 0 0 13 0 1521.8304 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8;A0A0U1RQX9 P47897 640 652 QARS Glutamine--tRNA ligase yes no 3 3.0545E-05 95.273 By MS/MS By MS/MS By MS/MS 2 1 1 0.95643 0.85608 11.123 4 Median 0.95643 0.85608 1.7619 2 2 Median 1.1038 0.96646 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85041 0.73735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77590000 37298000 40291000 39060000 20363000 18697000 35591000 15768000 19822000 0 0 0 2939400 1167400 1771900 0 0 0 0 0 0 13767 2356 14327 70234;70235;70236;70237 71116;71117;71118;71119 71116 4 HTHIDKPDCSGPPMDISNK GARLVAAKLEPKSFKHTHIDKPDCSGPPMD DKPDCSGPPMDISNKASGEIKIAYTYSVSF K H T N K A 0 0 1 3 1 0 0 1 2 2 0 2 1 0 3 2 1 0 0 0 0 0 19 1 2147.9728 Q99805 Q99805 242 260 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 4 0.00013309 37.85 By MS/MS 1 0.80234 0.76601 NaN 1 Median NaN NaN NaN 0 0 Median 0.80234 0.76601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11156000 3893500 7262700 0 0 0 11156000 3893500 7262700 0 0 0 0 0 0 0 0 0 0 0 0 13768 3770 14328 70238 71120;71121;71122 71121 3 HTHVQDGEAGGITQQIGATNVPLEAINEQTK GHVDTGKTKILDKLRHTHVQDGEAGGITQQ GATNVPLEAINEQTKMIKNFDRENVRIPGM R H T T K M 3 0 2 1 0 4 3 4 2 3 1 1 0 0 1 0 4 0 0 2 0 0 31 0 3255.612 A0A087WUT6;O60841 A0A087WUT6 653 683 EIF5B Eukaryotic translation initiation factor 5B yes no 3;4 1.6235E-48 117.94 By MS/MS By MS/MS By MS/MS 2 2 2 0.94676 0.88961 13.55 6 Median 0.9254 0.88961 7.8453 2 1 Median NaN NaN NaN 0 0 Median 1.0238 1.0896 8.5662 2 0 Median 0.92038 0.83343 1.1957 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117060000 60514000 56548000 47717000 26535000 21182000 0 0 0 64898000 31942000 32955000 4446800 2036400 2410300 0 0 0 0 0 0 13769 35 14329 70239;70240;70241;70242;70243;70244 71123;71124;71125;71126;71127;71128;71129;71130 71128 8 HTIAVVWGGVNIPHSPYR DGTYACSYTPVKAIKHTIAVVWGGVNIPHS AVVWGGVNIPHSPYRVNIGQGSHPQKVKVF K H T Y R V 1 1 1 0 0 0 0 2 2 2 0 0 0 0 2 1 1 1 1 3 0 0 18 0 2002.0537 O75369;E7EN95 O75369 716 733 FLNB Filamin-B yes no 3;4 5.9979E-15 106.6 By MS/MS 3 1.7333 1.6269 43.707 3 Plateau 1.7333 1.6269 43.707 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19274000 8785300 10489000 19274000 8785300 10489000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13770 1664 14330 70245;70246;70247 71131;71132 71132 2 HTLADNFNPVSEER GKEQRRAVVMISCNRHTLADNFNPVSEERG RHTLADNFNPVSEERGKVQDCFYLFEMDSS R H T E R G 1 1 2 1 0 0 2 0 1 0 1 0 0 1 1 1 1 0 0 1 0 0 14 0 1627.759 P20645;H0YGT2 P20645 148 161 M6PR Cation-dependent mannose-6-phosphate receptor yes no 3 0.03256 17.744 By MS/MS By MS/MS By matching 1 2 1 0.8996 0.80996 17.66 4 Median 0.73021 0.72396 NaN 1 0 Median 0.93102 0.79165 19.109 2 0 Median 0.99125 0.99918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14404000 7895700 6508600 5279100 3124800 2154300 6799800 3614700 3185100 2325400 1156200 1169200 0 0 0 0 0 0 0 0 0 13771 2082 14331 70248;70249;70250;70251 71133;71134 71134 2 HTLGENIADNGGLK QYSNYSVNGEPVNGRHTLGENIADNGGLKA RHTLGENIADNGGLKAAYRVWCSVRTPESS R H T L K A 1 0 2 1 0 0 1 3 1 1 2 1 0 0 0 0 1 0 0 0 0 0 14 0 1437.7212 B4DKB2;A0A3B3ISF9;P42892 B4DKB2 663 676 ECE1 Endothelin-converting enzyme 1 yes no 2 0.013452 31.843 By MS/MS 1 1.1457 1.0081 NaN 1 Median NaN NaN NaN 0 0 Median 1.1457 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1860400 852320 1008100 0 0 0 1860400 852320 1008100 0 0 0 0 0 0 0 0 0 0 0 0 13772 422 14332 70252 71135 71135 1 HTLLSLVR GTLCSQSLPLAASLKHTLLSLVRLTGDLIV PLAASLKHTLLSLVRLTGDLIVWSDEMNPP K H T V R L 0 1 0 0 0 0 0 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 8 0 937.5709 Q5T4S7 Q5T4S7 1286 1293 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.026169 42.109 By matching By MS/MS By matching By matching By matching 1 2 1 2 1 0.71865 0.71842 26.905 7 Median 1.1657 1.1396 NaN 1 0 Median 0.90178 0.72556 47.409 2 0 Median 0.71865 0.71842 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65798 0.66648 5.6408 2 0 Median 0.988 0.77507 NaN 1 0 Median 79093000 41625000 37468000 13113000 5742700 7370400 27594000 13629000 13965000 3834200 2212500 1621700 0 0 0 33814000 19643000 14171000 737990 398860 339130 13773 3089 14333 70253;70254;70255;70256;70257;70258;70259 71136 71136 1 HTLNPEETSSVVR IPHHAPVLLAWALLRHTLNPEETSSVVRKI LRHTLNPEETSSVVRKIGGTAIQLNVFQYL R H T V R K 0 1 1 0 0 0 2 0 1 0 1 0 0 0 1 2 2 0 0 2 0 0 13 0 1467.7318 Q5SRE5 Q5SRE5 331 343 NUP188 Nucleoporin NUP188 homolog yes yes 2;3 2.7171E-05 93.058 By MS/MS By MS/MS By MS/MS 1 4 2 0.9161 0.94104 19.524 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81426 0.90155 11.546 4 1 Median 1.335 1.1736 29.483 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17505000 8951000 8554200 0 0 0 0 0 0 14544000 7437500 7106900 2960800 1513500 1447300 0 0 0 0 0 0 13774 3074 14334 70260;70261;70262;70263;70264;70265;70266 71137;71138;71139;71140;71141;71142;71143;71144;71145 71141 9 HTLNQIDSVK AAVDYINKHLPRGYKHTLNQIDSVKVWPRR PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI K H T V K V 0 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1153.6091 CON__P12763 CON__P12763 58 67 yes yes 2 7.0188E-18 158.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 2 3 0.10293 0.08715 120.32 17 Median 0.026488 0.024823 205.11 4 4 Median 0.11764 0.10006 44.379 4 4 Median 0.078826 0.077061 38.554 2 2 Median 0.065892 0.057762 33.436 2 2 Median 0.16496 0.16359 57.341 2 2 Median 0.11458 0.095346 66.105 3 3 Median 244000000 236700000 7306700 174370000 173550000 815050 21611000 20169000 1442100 17053000 15515000 1537900 8036500 7576900 459590 11862000 10062000 1800400 11075000 9823700 1251700 + 13775 755 14335 70267;70268;70269;70270;70271;70272;70273;70274;70275;70276;70277;70278;70279;70280;70281;70282;70283;70284 71146;71147;71148;71149;71150;71151;71152;71153;71154;71155;71156;71157;71158;71159;71160;71161;71162;71163;71164;71165;71166 71158 21 HTLTQIK NNPRSVTLLIKGPNKHTLTQIKDAVRDGLR LLIKGPNKHTLTQIKDAVRDGLRAVKNAID K H T I K D 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 839.4865 P40227 P40227 382 388 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.008176 86.472 By matching By MS/MS By matching By matching 1 2 1 1 1.2695 1.1665 10.842 5 Median 1.2409 1.1979 NaN 1 0 Median 1.257 1.0778 0.83556 2 0 Median 1.4042 1.4039 NaN 1 0 Median 1.3286 1.1665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8623100 3761000 4862100 2207400 954110 1253300 5997100 2631600 3365500 302930 131710 171220 115760 43594 72163 0 0 0 0 0 0 13776 2285 14336 70285;70286;70287;70288;70289 71167;71168;71169;71170 71170 4 HTLVEADIGIQAER DYGKHLLGVEDLLQKHTLVEADIGIQAERV KHTLVEADIGIQAERVRGVNASAQKFATDG K H T E R V 2 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1550.8053 Q01082;A0A087WUZ3;F8W6C1 Q01082 570 583 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.0588E-07 119.25 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 2 1 1 1 0.9157 0.93192 15.033 7 Median NaN NaN NaN 0 0 Median 1.1928 1.0215 12.974 2 0 Median 0.85577 0.93274 3.5451 2 0 Median 0.9157 0.80345 NaN 1 0 Median 0.93459 1.0983 NaN 1 0 Median 0.84319 0.74225 NaN 1 0 Median 47590000 25665000 21926000 0 0 0 3128500 1353000 1775500 39697000 21815000 17882000 1755400 811870 943480 2532500 1397300 1135300 477220 288020 189200 13777 2681 14337 70290;70291;70292;70293;70294;70295;70296;70297;70298 71171;71172;71173;71174;71175;71176;71177 71172 7 HTMMFSATFPK RRIVEQDTMPPKGVRHTMMFSATFPKEIQM KGVRHTMMFSATFPKEIQMLARDFLDEYIF R H T P K E 1 0 0 0 0 0 0 0 1 0 0 1 2 2 1 1 2 0 0 0 0 0 11 0 1296.5995 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 376 386 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0066033 48.794 By MS/MS By matching 1 1 0.72259 0.64833 12.23 2 Median 0.7544 0.70689 NaN 1 0 Median 0.69212 0.59462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17643000 9875700 7767200 14304000 7525100 6778400 3339400 2350500 988870 0 0 0 0 0 0 0 0 0 0 0 0 13778 263 14338 70299;70300 71178;71179 71178 114 2 HTNFVEFR LIEEVHAVVTVRDAKHTNFVEFRNFKIIYR VTVRDAKHTNFVEFRNFKIIYRRYAGLYFC K H T F R N 0 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 8 0 1048.509 M0R0N4;M0QYZ2;P53680;M0QZ21 M0R0N4 48 55 AP2S1 AP-2 complex subunit sigma yes no 2 0.0011864 147.19 By matching By MS/MS By MS/MS 1 3 1 1.196 1.0493 25.833 5 Median 0.90944 0.88611 NaN 1 0 Median 1.2269 1.0493 30.873 3 0 Median 1.1193 1.1312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110550000 49228000 61320000 5052700 2397500 2655300 77283000 33284000 44000000 28212000 13547000 14666000 0 0 0 0 0 0 0 0 0 13779 1421 14339 70301;70302;70303;70304;70305 71180;71181;71182;71183 71183 4 HTNYTMEHIR QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ IFDNKHTNYTMEHIRVGWEQLLTTIARTIN K H T I R V 0 1 1 0 0 0 1 0 2 1 0 0 1 0 0 0 2 0 1 0 0 0 10 0 1300.5983 O43707;F5GXS2;H7C144;P12814;H9KV75;H7C5W8;P35609;A0A494C1A0;H0YJW3;H0YJ11;F6THM6;A0A494C060 O43707 724 733 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2;3 7.5199E-05 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 8 2 1 1 1 1.0633 0.9286 15.039 20 Median 1.1643 1.121 14.975 7 0 Median 1.0178 0.86908 6.5611 8 0 Median 0.91855 0.96188 15.602 2 0 Median 1.1064 0.94368 NaN 1 0 Median 1.103 1.1734 NaN 1 0 Median 1.0973 0.91474 NaN 1 0 Median 147190000 69440000 77752000 22609000 9946800 12662000 120230000 57359000 62875000 2082400 1018000 1064300 1080600 588990 491600 892420 383350 509070 294150 143480 150670 13780 1585;1983 14340;14341 70306;70307;70308;70309;70310;70311;70312;70313;70314;70315;70316;70317;70318;70319;70320;70321;70322;70323;70324;70325 71184;71185;71186;71187;71188;71189;71190;71191;71192;71193;71194;71195;71196;71197;71198 71193 513 15 HTQLEQMFR QILTKGEVQVSDKERHTQLEQMFRDIATIV VSDKERHTQLEQMFRDIATIVADKCVNPET R H T F R D 0 1 0 0 0 2 1 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 9 0 1188.571 Q9Y3A5;A0A087X020 Q9Y3A5 101 109 SBDS Ribosome maturation protein SBDS yes no 2 0.00050769 119.29 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.157 1.0094 22.826 6 Median 1.4177 1.3234 34.857 2 0 Median 1.0885 0.92054 NaN 1 0 Median 1.2116 1.1637 NaN 1 0 Median 1.157 0.96393 3.0819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75000000 32308000 42692000 30160000 11193000 18967000 7803900 4144800 3659100 22419000 10109000 12310000 14617000 6860700 7756200 0 0 0 0 0 0 13781 100 14342 70326;70327;70328;70329;70330;70331 71199;71200;71201;71202;71203;71204;71205;71206;71207;71208 71200 10 HTTEAAAGALQNITAGDR VGLYNRLLQRCELNRHTTEAAAGALQNITA EAAAGALQNITAGDRRWAGVLSRLALEQER R H T D R R 5 1 1 1 0 1 1 2 1 1 1 0 0 0 0 0 3 0 0 0 0 0 18 0 1795.8813 Q9Y446 Q9Y446 623 640 PKP3 Plakophilin-3 yes yes 3 7.5707E-07 80.738 By MS/MS By MS/MS 1 1 0.82063 0.77043 12.793 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68485 0.7038 NaN 1 0 Median 0.98332 0.84338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8632600 4498800 4133800 0 0 0 0 0 0 5452100 2957800 2494300 3180500 1541100 1639500 0 0 0 0 0 0 13782 4437 14343 70332;70333 71209;71210;71211;71212 71209 4 HTTEAAAGALQNITAGDRR VGLYNRLLQRCELNRHTTEAAAGALQNITA AAAGALQNITAGDRRWAGVLSRLALEQERI R H T R R W 5 2 1 1 0 1 1 2 1 1 1 0 0 0 0 0 3 0 0 0 0 0 19 1 1951.9824 Q9Y446 Q9Y446 623 641 PKP3 Plakophilin-3 yes yes 3 3.9384E-05 39.849 By matching By MS/MS By MS/MS 2 3 2 0.90123 0.93481 32.273 7 Median 0.90647 0.91106 3.6391 2 0 Median NaN NaN NaN 0 0 Median 0.81337 0.93984 51.04 3 0 Median 0.96857 0.89679 18.545 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23178000 12143000 11034000 6305700 3387900 2917800 0 0 0 13120000 6723300 6396700 3751800 2032200 1719600 0 0 0 0 0 0 13783 4437 14344 70334;70335;70336;70337;70338;70339;70340 71213;71214;71215 71214 3 HTTERDFHVDEQTTVK YISFKGKWEKPFEMKHTTERDFHVDEQTTV TTERDFHVDEQTTVKVPMMNRLGMFDLHYC K H T V K V 0 1 0 2 0 1 2 0 2 0 0 1 0 1 0 0 4 0 0 2 0 0 16 1 1941.9181 CON__P34955 CON__P34955 224 239 yes yes 3;4 4.3683E-05 61.265 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53703000 53703000 0 53703000 53703000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 13784 763 14345 70341;70342 71216;71217 71217 2 HTTSIFDDFSHYEK LEKAKQVLKIIASYKHTTSIFDDFSHYEKR KHTTSIFDDFSHYEKRQEEEESVKKERQGR K H T E K R 0 0 0 2 0 0 1 0 2 1 0 1 0 2 0 2 2 0 1 0 0 0 14 0 1725.7635 Q9Y5A9 Q9Y5A9 549 562 YTHDF2 YTH domain-containing family protein 2 yes yes 3 0.049196 13.413 By MS/MS By matching By matching 1 2 1 1.0409 1.3122 34.509 4 Linear 1.169 1.1189 NaN 1 0 Median 1.0801 0.92727 23.181 2 0 Median NaN NaN NaN 0 0 Median 0.60189 0.53586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6679100 3342400 3336600 5039100 2597400 2441800 1489600 656780 832860 0 0 0 150290 88280 62009 0 0 0 0 0 0 13785 4454 14346 70343;70344;70345;70346 71218 71218 1 HTVDDGLDIR VRKELIREVEMGPFKHTVDDGLDIRKAAFE MGPFKHTVDDGLDIRKAAFECMYTLLDSCL K H T I R K 0 1 0 3 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1139.5571 Q86VP6;A0A0C4DGH5 Q86VP6 1073 1082 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.00056168 116.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 0.89707 0.90275 45.854 6 Median 0.76146 0.74613 33.684 2 0 Median 1.0975 0.90529 NaN 1 0 Median 0.81873 0.90021 NaN 1 1 Median 1.1665 0.98856 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.37571 0.30594 NaN 1 1 Median 79754000 39385000 40369000 13617000 7097600 6519400 42159000 19540000 22619000 12678000 7231900 5445700 9616200 4399500 5216700 0 0 0 1683900 1116400 567500 13786 3288 14347 70347;70348;70349;70350;70351;70352;70353 71219;71220;71221;71222;71223;71224;71225;71226 71223 8 HTVDDGLDIRK VRKELIREVEMGPFKHTVDDGLDIRKAAFE GPFKHTVDDGLDIRKAAFECMYTLLDSCLD K H T R K A 0 1 0 3 0 0 0 1 1 1 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1267.6521 Q86VP6;A0A0C4DGH5 Q86VP6 1073 1083 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 3.1819E-05 143.28 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 1.21 1.0681 36.141 7 Median 0.99137 1.0317 NaN 1 0 Median 1.1548 1.0681 38.458 3 0 Median NaN NaN NaN 0 0 Median 1.4236 1.3681 NaN 1 0 Median 1.734 1.9256 NaN 1 0 Median 1.21 1.0658 NaN 1 0 Median 27600000 12811000 14789000 5050200 2599400 2450800 19250000 8875800 10374000 0 0 0 1555300 597290 957990 1302900 535420 767510 441820 203170 238650 13787 3288 14348 70354;70355;70356;70357;70358;70359;70360 71227;71228;71229;71230;71231;71232;71233 71230 7 HTVDQTRPGAFER DTLYWTSYTTSTITRHTVDQTRPGAFERET TRHTVDQTRPGAFERETVITMSGDDHPRAF R H T E R E 1 2 0 1 0 1 1 1 1 0 0 0 0 1 1 0 2 0 0 1 0 0 13 1 1512.7433 Q07954 Q07954 2310 2322 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 0.0010663 44.616 By MS/MS By MS/MS 2 2 0.83547 0.86821 32.135 4 Median 0.68918 0.74295 2.1157 2 0 Median 1.2426 1.2089 26.896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7774100 4021200 3752900 4374200 2596900 1777300 3399900 1424300 1975600 0 0 0 0 0 0 0 0 0 0 0 0 13788 2733 14349 70361;70362;70363;70364 71234;71235;71236;71237;71238 71235 5 HTVYPKPEEWPK TAGVAFEYDPDNALRHTVYPKPEEWPKSEY ALRHTVYPKPEEWPKSEYSELDEDESQAPY R H T P K S 0 0 0 0 0 0 2 0 1 0 0 2 0 0 3 0 1 1 1 1 0 0 12 1 1509.7616 P19387 P19387 194 205 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 3 0.0026475 38.021 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.54083 0.52692 36.322 4 Median NaN NaN NaN 0 0 Median 0.75629 0.68161 NaN 1 0 Median 0.36521 0.38284 NaN 1 0 Median 0.89858 0.78902 NaN 1 1 Median 0.38675 0.40734 NaN 1 0 Median NaN NaN NaN 0 0 Median 11327000 6968800 4358200 0 0 0 1498800 843760 654990 3295800 2179000 1116800 2168100 1158400 1009700 4364400 2787700 1576700 0 0 0 13789 2065 14350 70365;70366;70367;70368 71239;71240;71241;71242;71243 71240 5 HVAAASLIR NVVIHLLGDEDPRVRHVAAASLIRLVPKLF EDPRVRHVAAASLIRLVPKLFYKCDQGQAD R H V I R L 3 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 936.5505 P42858 P42858 925 933 HTT Huntingtin yes yes 2 0.028146 50.703 By MS/MS 1 0.92239 0.75201 NaN 1 Median NaN NaN NaN 0 0 Median 0.92239 0.75201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9407000 5917600 3489400 0 0 0 9407000 5917600 3489400 0 0 0 0 0 0 0 0 0 0 0 0 13790 2319 14351 70369 71244 71244 1 HVAAGTQQPYTDGVR RLVQLLVKAHQDAQRHVAAGTQQPYTDGVR HVAAGTQQPYTDGVRMEEIVEGCTGALHIL R H V V R M 2 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 2 0 1 2 0 0 15 0 1598.7801 P14923 P14923 541 555 JUP Junction plakoglobin yes yes 2;3 1.2483E-06 87.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 1 5 2 2 0.71734 0.6589 61.699 15 Median 0.71734 0.71119 NaN 1 0 Median 0.94191 0.84522 48.45 5 2 Median 0.54266 0.56545 NaN 1 0 Median 0.611 0.53165 90.689 5 3 Median 0.57558 0.60511 48.316 2 1 Median 0.60148 0.49453 NaN 1 0 Median 24382000 14752000 9630500 1535200 840930 694260 6856900 3688400 3168500 5620300 3444100 2176200 4751400 3279400 1472000 5117700 3216200 1901500 500680 282630 218050 13791 2013 14352 70370;70371;70372;70373;70374;70375;70376;70377;70378;70379;70380;70381;70382;70383;70384;70385 71245;71246;71247;71248;71249;71250;71251;71252;71253;71254;71255;71256;71257;71258;71259 71250 15 HVAEVLEYTK EDKFTKSKTVYSILRHVAEVLEYTKDEQLE YSILRHVAEVLEYTKDEQLESLFQRTAWVF R H V T K D 1 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 1 2 0 0 10 0 1187.6186 P05198;G3V4T5;H0YJS4 P05198 114 123 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 3.8052E-05 140.45 By MS/MS By MS/MS By MS/MS 2 1 2 1.2257 1.0286 13.476 5 Median NaN NaN NaN 0 0 Median 1.1797 0.98934 1.3055 2 2 Median 1.3697 1.3159 NaN 1 0 Median 1.3397 1.1271 12.933 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23828000 10147000 13681000 0 0 0 7966800 3370200 4596600 6889100 2940300 3948800 8972400 3836900 5135500 0 0 0 0 0 0 13792 1862 14353 70386;70387;70388;70389;70390 71260;71261;71262;71263;71264;71265;71266 71266 6 HVAEVLEYTKDEQLESLFQR EDKFTKSKTVYSILRHVAEVLEYTKDEQLE LEYTKDEQLESLFQRTAWVFDDKYKRPGYG R H V Q R T 1 1 0 1 0 2 4 0 1 0 3 1 0 1 0 1 1 0 1 2 0 0 20 1 2433.2176 P05198;G3V4T5;H0YJS4 P05198 114 133 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 3;4 6.5579E-14 98.759 By matching By MS/MS By MS/MS 2 2 1 1.1897 1.1985 15.402 5 Median NaN NaN NaN 0 0 Median 1.1012 1.0068 6.0012 2 0 Median 1.2434 1.3516 6.2988 2 0 Median 1.3789 1.1985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21854000 9180700 12673000 0 0 0 2229000 1032100 1196900 13656000 6098500 7557600 5968600 2050100 3918600 0 0 0 0 0 0 13793 1862 14354 70391;70392;70393;70394;70395 71267;71268;71269;71270;71271 71268 5 HVALSVGGR PGTRAQDIQCGLQSRHVALSVGGREILKGK CGLQSRHVALSVGGREILKGKLFDSTIADE R H V G R E 1 1 0 0 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 894.50355 E5RFP0;Q8WVJ2 E5RFP0 51 59 NUDCD2 NudC domain-containing protein 2 yes no 2 0.0017633 77.923 By MS/MS By MS/MS 2 1 1.1602 1.1425 1.9313 3 Plateau 1.1467 1.1229 0.16594 2 0 Median 1.4005 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14335000 6156600 8178400 5070500 2308800 2761800 9264400 3847900 5416600 0 0 0 0 0 0 0 0 0 0 0 0 13794 836 14355 70396;70397;70398 71272;71273;71274;71275 71274 4 HVANTLSVYR WAVLVCTSRFWFNYRHVANTLSVYRSVKRL WFNYRHVANTLSVYRSVKRLGIPDSHIVLM R H V Y R S 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 2 0 0 10 0 1158.6146 Q92643;A6NEM5 Q92643 61 70 PIGK GPI-anchor transamidase yes no 2 0.034259 32.841 By MS/MS By matching By MS/MS 1 2 1 0.95759 0.88628 26.183 3 Plateau 0.78986 0.79303 NaN 1 0 Median 1.129 0.97143 NaN 1 0 Median 0.53666 0.57781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7017400 3627400 3390100 2389600 1470800 918860 2955600 1149600 1806100 1672100 1007000 665140 0 0 0 0 0 0 0 0 0 13795 510 14356 70399;70400;70401;70402 71276;71277 71277 2 HVAVTNMNEHSSR PDEVMDTIDEGKSNRHVAVTNMNEHSSRSH NRHVAVTNMNEHSSRSHSIFLINVKQENTQ R H V S R S 1 1 2 0 0 0 1 0 2 0 0 0 1 0 0 2 1 0 0 2 0 0 13 0 1480.6841 O60282;A0A0G2JMZ6;P33176 P33176 191 203 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2;3 2.3417E-07 101.39 By MS/MS By MS/MS By matching By matching 2 3 2 1 1.216 1.0974 23.809 8 Median 1.2351 1.2364 15.217 2 0 Median 1.1999 1.0066 1.4667 3 0 Plateau 1.6499 1.7189 10.546 2 0 Median 1.2322 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10912000 4844200 6067500 1652200 796500 855740 8706900 3867000 4839900 334540 110450 224100 218040 70250 147790 0 0 0 0 0 0 13796 2221;1609 14357 70403;70404;70405;70406;70407;70408;70409;70410 71278;71279;71280;71281;71282;71283 71281 6 HVDAHATLNDGVVVQVMGLLSNNNQALR KVMSQNFTNCHTKIRHVDAHATLNDGVVVQ VQVMGLLSNNNQALRRFMQTFVLAPEGSVA R H V L R R 3 1 4 2 0 2 0 2 2 0 4 0 1 0 0 1 1 0 0 5 0 0 28 0 2984.525 Q13283;E5RIZ6;E5RIF8;E5RH42;E5RJU8 Q13283 79 106 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 3;4 3.5719E-09 45.611 By MS/MS 4 0.90807 0.78659 7.558 4 Median NaN NaN NaN 0 0 Median 0.90807 0.78659 7.558 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15065000 7527700 7537200 0 0 0 15065000 7527700 7537200 0 0 0 0 0 0 0 0 0 0 0 0 13797 2803 14358 70411;70412;70413;70414 71284;71285;71286;71287 71287 4 HVDLGGGLKPPGYYVQR GAWLCDDNFPDDESRHVDLGGGLKPPGYYV DLGGGLKPPGYYVQRSCGLFTAPFPQDSDE R H V Q R S 0 1 0 1 0 1 0 4 1 0 2 1 0 0 2 0 0 0 2 2 0 0 17 1 1854.9741 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 2210 2226 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 0.0040956 42.242 By MS/MS 1 0.84697 0.78851 NaN 1 Median NaN NaN NaN 0 0 Median 0.84697 0.78851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5703600 2937300 2766300 0 0 0 5703600 2937300 2766300 0 0 0 0 0 0 0 0 0 0 0 0 13798 137 14359 70415 71288 71288 0 HVDLTLYTMRPK CHRWKRLVDDRWLWRHVDLTLYTMRPKVMW LWRHVDLTLYTMRPKVMWHLLRRYMASRLH R H V P K V 0 1 0 1 0 0 0 0 1 0 2 1 1 0 1 0 2 0 1 1 0 0 12 1 1472.781 Q9NXK8 Q9NXK8 46 57 FBXL12 F-box/LRR-repeat protein 12 yes yes 3 0.0038715 36.32 By matching By MS/MS 1 1 0.98837 1.0342 3.0204 2 Median 1.0152 1.0123 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96227 1.0565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6540300 3161500 3378800 4747600 2336500 2411100 0 0 0 1792700 825020 967660 0 0 0 0 0 0 0 0 0 13799 4167 14360 70416;70417 71289 71289 1 HVDNIMFENHTVADR KCQPSAITLNRQKYRHVDNIMFENHTVADR HVDNIMFENHTVADRFLDFWRKTGNQHFGY R H V D R F 1 1 2 2 0 0 1 0 2 1 0 0 1 1 0 0 1 0 0 2 0 0 15 0 1796.8264 Q8TAT6 Q8TAT6 222 236 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 3 2.7843E-10 145.69 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2721 1.1509 6.4912 6 Median 1.2571 1.1854 NaN 1 0 Median 1.3448 1.1647 6.309 2 0 Median 1.0832 1.1288 11.979 2 1 Median 1.3341 1.1174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56015000 23809000 32205000 28258000 11819000 16439000 12178000 4873300 7304300 11079000 5248300 5830700 4499700 1868300 2631500 0 0 0 0 0 0 13800 3456 14361;14362 70418;70419;70420;70421;70422;70423 71290;71291;71292;71293;71294;71295 71290 1738 6 HVDTGMGLER HNREADGSLQPLPQRHVDTGMGLERLVAVL PLPQRHVDTGMGLERLVAVLQGKHSTYDTD R H V E R L 0 1 0 1 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 1 0 0 10 0 1113.5237 Q5JTZ9 Q5JTZ9 263 272 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.007999 60.436 By MS/MS 1 1.6074 1.4143 NaN 1 Median NaN NaN NaN 0 0 Median 1.6074 1.4143 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1443900 572260 871590 0 0 0 1443900 572260 871590 0 0 0 0 0 0 0 0 0 0 0 0 13801 3054 14363 70424 71296 71296 1 HVDYVADQIVTK QISFVNSIATSKGGRHVDYVADQIVTKLVD GGRHVDYVADQIVTKLVDVVKKKNKGGVAV R H V T K L 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 3 0 0 12 0 1386.7143 P11388 P11388 325 336 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.7026E-10 168.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 4 4 3 1.3235 1.2801 20.224 17 Median NaN NaN NaN 0 0 Median 1.3813 1.223 6.4508 2 0 Median 1.1421 1.2588 24.27 5 3 Median 1.6289 1.4641 32.322 4 1 Median 1.2955 1.3596 9.03 3 1 Median 1.378 1.1322 5.5815 3 1 Median 329390000 142720000 186670000 0 0 0 5420200 2290300 3130000 108970000 51850000 57122000 23002000 8736700 14265000 163780000 67777000 96001000 28213000 12064000 16149000 13802 1963 14364 70425;70426;70427;70428;70429;70430;70431;70432;70433;70434;70435;70436;70437;70438;70439;70440;70441;70442 71297;71298;71299;71300;71301;71302;71303;71304;71305;71306;71307;71308;71309;71310;71311;71312;71313;71314;71315;71316;71317;71318;71319;71320;71321;71322 71303 26 HVDYVVDQVVGK QISFVNSIATTKGGRHVDYVVDQVVGKLIE GGRHVDYVVDQVVGKLIEVVKKKNKAGVSV R H V G K L 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 5 0 0 12 0 1356.7038 Q02880;E9PCY5 Q02880 346 357 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 4.5025E-08 157.78 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 0.84841 0.87919 86.795 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80475 0.88426 22.765 3 0 Plateau 1.3927 1.2499 162.91 3 2 Median 0.84841 0.86777 NaN 1 0 Median 1.0925 0.91842 7.2302 2 1 Median 77714000 44105000 33609000 0 0 0 0 0 0 52381000 30391000 21990000 11210000 6329500 4880900 9871000 5311700 4559300 4251500 2072900 2178600 13803 2704 14365 70443;70444;70445;70446;70447;70448;70449;70450;70451;70452;70453 71323;71324;71325;71326;71327;71328;71329;71330;71331;71332;71333 71326 10 HVEASGGSGPGDSGPSDPR RLADPRLSRDPRLTRHVEASGGSGPGDSGP SGGSGPGDSGPSDPRLARALPTSKPEGSLH R H V P R L 1 1 0 2 0 0 1 5 1 0 0 0 0 0 3 4 0 0 0 1 0 0 19 0 1764.7663 M0QY97;Q9UPT8 M0QY97 480 498 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes no 3 0.014622 19.036 By matching By MS/MS By matching 1 1 1 0.97826 0.5067 32.662 3 Plateau 0.48424 0.47767 NaN 1 0 Median 0.97898 0.86422 NaN 1 0 Median 0.4543 0.5067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1435100 808290 626860 286860 185510 101350 896320 450630 445690 251970 172140 79822 0 0 0 0 0 0 0 0 0 13804 1413 14366 70454;70455;70456 71334 71334 1 HVEAVAYYK KAYGRMGLALSSLNKHVEAVAYYKKALELD LSSLNKHVEAVAYYKKALELDPDNETYKSN K H V Y K K 2 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 2 2 0 0 9 0 1078.5447 O43765 O43765 175 183 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 2 0.00041503 131.06 By MS/MS By MS/MS 1 1 1.1041 0.97035 10.007 2 Median 1.1314 1.0415 NaN 1 0 Median 1.0774 0.90406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31238000 14349000 16889000 12672000 5556900 7114700 18567000 8792200 9774600 0 0 0 0 0 0 0 0 0 0 0 0 13805 1588 14367 70457;70458 71335;71336;71337;71338 71336 4 HVEAVAYYKK KAYGRMGLALSSLNKHVEAVAYYKKALELD SSLNKHVEAVAYYKKALELDPDNETYKSNL K H V K K A 2 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 2 2 0 0 10 1 1206.6397 O43765 O43765 175 184 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 2;3 9.5593E-05 77.677 By MS/MS By MS/MS By matching 4 2 1 1.0053 1.0022 27.915 7 Median 0.91833 0.87395 31.608 4 0 Median 1.1817 1.0647 7.5475 2 0 Median 1.0053 1.068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9040900 4452700 4588200 5564500 2961700 2602800 3333200 1429000 1904200 143240 62013 81227 0 0 0 0 0 0 0 0 0 13806 1588 14368 70459;70460;70461;70462;70463;70464;70465 71339;71340;71341;71342;71343 71339 5 HVEDGNVTVQHAALSALR VDNGIVEKLMDLLDRHVEDGNVTVQHAALS DGNVTVQHAALSALRNLAIPVINKAKMLSA R H V L R N 3 1 1 1 0 1 1 1 2 0 2 0 0 0 0 1 1 0 0 3 0 0 18 0 1915.9864 P52306;H0Y8M2 P52306 369 386 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 3 8.5396E-07 79.97 By MS/MS By matching 1 1 1.3739 1.3711 26.902 2 Median 1.1966 1.1336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5775 1.6584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17311000 6518400 10792000 15098000 5570200 9527600 0 0 0 2212800 948170 1264600 0 0 0 0 0 0 0 0 0 13807 2451 14369 70466;70467 71344 71344 1 HVEDLLTK EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQ SNEHLQKHVEDLLTKLKEAKEQQASMEEKF K H V T K L 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 953.5182 P12270 P12270 253 260 TPR Nucleoprotein TPR yes yes 2 0.0026434 106.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.065 1.042 7.985 7 Median NaN NaN NaN 0 0 Median 1.131 1.0039 9.1211 2 0 Median 0.98153 1.0698 9.4771 2 0 Median 1.1853 1.1057 10.532 2 0 Median NaN NaN NaN 0 0 Median 1.2161 1.042 NaN 1 0 Median 44607000 21314000 23293000 0 0 0 18776000 8929500 9846900 17534000 8544500 8989100 5731800 2572900 3158900 0 0 0 2564800 1267200 1297500 13808 1978 14370 70468;70469;70470;70471;70472;70473;70474;70475 71345;71346;71347;71348;71349;71350;71351;71352;71353;71354;71355;71356;71357 71347 13 HVEEFSPR CIVGDPSTAKSQFLKHVEEFSPRAVYTSGK AKSQFLKHVEEFSPRAVYTSGKASSAAGLT K H V P R A 0 1 0 0 0 0 2 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 8 0 999.47739 Q14566 Q14566 408 415 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0076735 66.073 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.80794 0.71667 16.845 6 Median 0.74021 0.73168 25.451 2 0 Median 0.88488 0.76481 25.962 2 0 Median 0.63531 0.68077 NaN 1 0 Median 0.88612 0.75447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23426000 12386000 11040000 3307000 1841300 1465700 17029000 8757700 8271200 2583500 1548600 1035000 506330 238470 267860 0 0 0 0 0 0 13809 2881 14371 70476;70477;70478;70479;70480;70481 71358;71359;71360;71361;71362;71363;71364;71365;71366;71367 71358 10 HVENYLK KLNSIGNYYKPWFFKHVENYLKTNREGLEY YYKPWFFKHVENYLKTNREGLEYIPLRHYY K H V L K T 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 901.46577 A0A0A0MTI1;Q15392 A0A0A0MTI1 307 313 DHCR24 Delta(24)-sterol reductase yes no 2 0.038095 46.016 By matching By MS/MS By matching 1 3 1 1.3454 1.0555 14.449 5 Linear 0.87717 0.85651 NaN 1 0 Median 1.2926 1.1287 8.3949 3 0 Plateau 1.1706 1.2243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4469700 2081200 2388500 233770 123190 110580 3763300 1737300 2026000 472630 220780 251850 0 0 0 0 0 0 0 0 0 13810 192 14372 70482;70483;70484;70485;70486 71368 71368 1 HVEPGNAAIR YCGHEYTINNLKFARHVEPGNAAIREKLAW LKFARHVEPGNAAIREKLAWAKEKYSIGEP R H V I R E 2 1 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1062.557 H3BPK3;Q16775;H3BPQ4 H3BPK3 164 173 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 2 0.0037391 55.676 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.92884 0.8497 16.102 7 Median 0.85252 0.81475 3.7587 2 0 Median 1.1194 0.95798 16.961 2 0 Median 0.7721 0.74369 23.094 2 0 Median 1.114 0.90869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6984700 3589000 3395700 2964000 1587000 1377000 1487300 726580 760730 2282100 1150600 1131500 251300 124790 126510 0 0 0 0 0 0 13811 1224 14373 70487;70488;70489;70490;70491;70492;70493 71369;71370;71371;71372;71373;71374 71371 6 HVFAIFNTEQR NLKIRDVEKGFMSNKHVFAIFNTEQRNVYK MSNKHVFAIFNTEQRNVYKDLRQIELACDS K H V Q R N 1 1 1 0 0 1 1 0 1 1 0 0 0 2 0 0 1 0 0 1 0 0 11 0 1360.6888 P50570 P50570 584 594 DNM2 Dynamin-2 yes yes 3 3.9679E-05 116.52 By matching By matching By MS/MS By matching 1 2 1 1 1.0553 0.94619 26.146 5 Median 0.69885 0.68015 NaN 1 0 Median 1.0652 0.9502 0.59832 2 0 Median 1.3076 1.3883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98955 0.82576 NaN 1 0 Median 15059000 7310400 7748900 3174100 1624700 1549300 608860 322180 286670 10990000 5251800 5737700 0 0 0 0 0 0 286780 111650 175140 13812 2417 14374 70494;70495;70496;70497;70498 71375;71376 71375 2 HVFGESDELIGQK DCGATWVVLGHSERRHVFGESDELIGQKVA RRHVFGESDELIGQKVAHALAEGLGVIACI R H V Q K V 0 0 0 1 0 1 2 2 1 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1457.7151 P60174;U3KPZ0;U3KQF3;U3KPS5 P60174 138 150 TPI1 Triosephosphate isomerase yes no 2;3 4.4169E-16 189.13 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.1749 0.97756 6.0471 7 Median 1.0513 0.9625 2.1953 2 0 Median 1.1924 0.98103 1.8418 2 0 Median 1.1056 1.0367 9.3101 2 0 Median 1.3084 1.0833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1742000000 815200000 926790000 1319100000 626300000 692830000 371730000 165650000 206080000 49016000 22312000 26704000 2117700 943270 1174500 0 0 0 0 0 0 13813 2523 14375 70499;70500;70501;70502;70503;70504;70505 71377;71378;71379;71380;71381;71382;71383;71384;71385;71386;71387;71388;71389;71390;71391;71392;71393;71394;71395;71396;71397;71398;71399;71400 71397 24 HVFGQAVK ______________________________ VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW R H V V K N 1 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 884.48684 Q9ULV4;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7 Q9ULV4 12 19 CORO1C Coronin-1C;Coronin yes no 2 0.0098457 77.748 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 1 1.1562 0.99681 28.659 7 Median 1.0308 0.92458 NaN 1 0 Median 2.3378 1.9829 NaN 1 1 Median 0.98074 0.99681 18.537 3 1 Median 1.1755 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1562 0.94175 NaN 1 0 Median 31167000 11373000 19794000 48829 24542 24287 8944700 2452400 6492300 21017000 8367100 12650000 1067300 497730 569610 0 0 0 89275 31019 58256 13814 4329 14376 70506;70507;70508;70509;70510;70511;70512;70513 71401;71402;71403;71404;71405 71402 5 HVFGQPVK ______________________________ VRQSKFRHVFGQPVKNDQCYEDIRVSRVTW R H V V K N 0 0 0 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 0 2 0 0 8 0 910.50249 Q9BR76;A0A087WW53;F5H390;F5H0D2 Q9BR76 14 21 CORO1B Coronin-1B;Coronin yes no 2 0.0035455 89.673 By matching By MS/MS By MS/MS By MS/MS 2 3 3 1 0.86571 0.84779 16.966 9 Median 1.0096 0.9963 23.108 2 0 Median 1.0995 0.93324 17.765 3 0 Plateau 0.8809 0.88954 7.5657 3 0 Plateau 1.1097 0.96921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12285000 6171800 6113100 1621500 902030 719430 7957000 3905000 4052000 2203900 1113500 1090400 502550 251250 251300 0 0 0 0 0 0 13815 3792 14377 70514;70515;70516;70517;70518;70519;70520;70521;70522 71406;71407;71408;71409 71408 4 HVFLTGPPGVGK ______________________________ MARHVFLTGPPGVGKTTLIHKASEVLKSSG R H V G K T 0 0 0 0 0 0 0 3 1 0 1 1 0 1 2 0 1 0 0 2 0 0 12 0 1207.6713 Q5TDF0;Q9BSD7 Q5TDF0 4 15 NTPCR Cancer-related nucleoside-triphosphatase yes no 2;3 3.7061E-06 163.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 0.88446 0.77126 12.405 12 Median 0.76508 0.71397 5.8223 2 0 Median 1.001 0.85449 9.6692 2 0 Median 0.85407 0.80773 21.76 2 0 Median 0.97681 0.80454 10.797 2 0 Median 0.76213 0.81069 17.645 2 0 Median 0.96075 0.79251 17.699 2 0 Median 118650000 66315000 52334000 40767000 22838000 17929000 5633400 2889000 2744400 46060000 26117000 19943000 3684700 1845400 1839300 19299000 10999000 8300300 3205700 1627600 1578100 13816 3102 14378 70523;70524;70525;70526;70527;70528;70529;70530;70531;70532;70533;70534 71410;71411;71412;71413;71414;71415;71416;71417;71418;71419;71420;71421;71422;71423;71424;71425 71410 16 HVFTTFYAK STVFHQNDVKIPDAKHVFTTFYAKTKSLLV KIPDAKHVFTTFYAKTKSLLVNPVLFPNRE K H V A K T 1 0 0 0 0 0 0 0 1 0 0 1 0 2 0 0 2 0 1 1 0 0 9 0 1112.5655 Q9BUB7 Q9BUB7 207 215 TMEM70 Transmembrane protein 70, mitochondrial yes yes 2 0.00041503 131.06 By MS/MS By MS/MS 2 1 1.2677 1.1381 7.0209 2 Median 1.1502 1.083 NaN 1 1 Median 1.3971 1.1961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34515000 17569000 16946000 24077000 13456000 10621000 10439000 4112900 6325900 0 0 0 0 0 0 0 0 0 0 0 0 13817 3837 14379 70535;70536;70537 71426;71427;71428;71429 71429 4 HVFWGSGSHTLPALLENLK HFLSPYVSPKESPFRHVFWGSGSHTLPALL GSGSHTLPALLENLKLRKQNNGAFNETLFR R H V L K L 1 0 1 0 0 0 1 2 2 0 4 1 0 1 1 2 1 1 0 1 0 0 19 0 2105.1058 P02786;G3V0E5 P02786 699 717 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 3 8.2493E-14 105.89 By MS/MS 3 1.0319 0.91573 16.704 3 Median NaN NaN NaN 0 0 Median 1.0319 0.91573 16.704 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22643000 10631000 12012000 0 0 0 22643000 10631000 12012000 0 0 0 0 0 0 0 0 0 0 0 0 13818 1836 14380 70538;70539;70540 71430;71431;71432;71433 71432 4 HVFYSTIDWNK NRLGSGPDGAEEIKRHVFYSTIDWNKLYRR EIKRHVFYSTIDWNKLYRREIKPPFKPAVA R H V N K L 0 0 1 1 0 0 0 0 1 1 0 1 0 1 0 1 1 1 1 1 0 0 11 0 1408.6776 E9PGT3;Q15418 E9PGT3 307 317 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 2 0.003026 50.607 By MS/MS 1 1.7235 1.6133 NaN 1 Median 1.7235 1.6133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5415000 1882500 3532500 5415000 1882500 3532500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13819 926 14381 70541 71434 71434 1 HVGDLGNVTADK NPLSRKHGGPKDEERHVGDLGNVTADKDGV EERHVGDLGNVTADKDGVADVSIEDSVISL R H V D K D 1 0 1 2 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1224.6099 P00441;H7BYH4 P00441 81 92 SOD1 Superoxide dismutase [Cu-Zn] yes no 2;3 1.375E-07 124.42 By MS/MS By MS/MS By MS/MS 4 3 1 1.1549 1.0707 4.4779 8 Median 1.1293 1.0636 5.1102 4 2 Median 1.3148 1.1109 2.8691 3 0 Median 1.0687 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77219000 35687000 41532000 49489000 23190000 26299000 24890000 11279000 13611000 2839500 1217400 1622100 0 0 0 0 0 0 0 0 0 13820 1820 14382 70542;70543;70544;70545;70546;70547;70548;70549 71435;71436;71437;71438;71439;71440;71441;71442;71443;71444;71445;71446;71447 71438 13 HVGMAVAGLLADAR LYEEGSNKRLFNVDRHVGMAVAGLLADARS RHVGMAVAGLLADARSLADIAREEASNFRS R H V A R S 4 1 0 1 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 2 0 0 14 0 1379.7344 P25788 P25788 73 86 PSMA3 Proteasome subunit alpha type-3 yes yes 2;3 1.4608E-06 126.71 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.2516 1.1306 12.832 8 Median 1.1702 1.1128 19.633 3 0 Median 1.2787 1.0812 7.6591 3 2 Median 1.2895 1.2068 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2251 1.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median 100050000 43807000 56242000 76169000 32425000 43744000 22084000 10590000 11493000 1314100 524070 790050 0 0 0 483310 268360 214940 0 0 0 13821 2137 14383;14384 70550;70551;70552;70553;70554;70555;70556;70557 71448;71449;71450;71451;71452;71453;71454;71455 71451 896 8 HVGNQQYNVTYVVK GVHGPTTPCEEVSMKHVGNQQYNVTYVVKE KHVGNQQYNVTYVVKERGDYVLAVKWGEEH K H V V K E 0 0 2 0 0 2 0 1 1 0 0 1 0 0 0 0 1 0 2 4 0 0 14 0 1647.8369 O75369;E7EN95;A0A0A0MT44 O75369 2563 2576 FLNB Filamin-B yes no 2;3 5.0873E-33 215.72 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 1.0576 1.0103 5.6873 10 Median 1.035 1.0182 5.9461 4 0 Median 1.1259 1.0101 3.6638 3 0 Median 0.92818 1.0272 5.0356 2 0 Median 1.1654 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 295160000 139650000 155510000 93848000 45690000 48158000 175840000 80821000 95024000 22458000 11781000 10677000 3008000 1362000 1646000 0 0 0 0 0 0 13822 1664 14385 70558;70559;70560;70561;70562;70563;70564;70565;70566;70567 71456;71457;71458;71459;71460;71461;71462;71463;71464;71465;71466;71467;71468;71469;71470 71469 15 HVHPTTAPDVTSSLPEEK MTSGIRRNWIQTIMKHVHPTTAPDVTSSLP PTTAPDVTSSLPEEKNKSSCSFETCPRPTE K H V E K N 1 0 0 1 0 0 2 0 2 0 1 1 0 0 3 2 3 0 0 2 0 0 18 0 1943.9589 A0A494BZV2;Q6WCQ1;J3KSW8 A0A494BZV2 599 616 MPRIP Myosin phosphatase Rho-interacting protein yes no 3;4 1.7322E-05 55.589 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.44853 0.48363 19.799 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41709 0.45 10.194 2 1 Median 0.76506 0.66047 NaN 1 1 Median 0.39585 0.40934 NaN 1 0 Median 0.6592 0.54417 NaN 1 1 Median 18199000 12040000 6158700 0 0 0 0 0 0 8026000 5680700 2345400 4679200 2562100 2117100 3644900 2596500 1048500 1848900 1201100 647770 13823 453 14386 70568;70569;70570;70571;70572 71471;71472;71473;71474;71475;71476 71471 6 HVIADQEVMETNR PEEVMDVLEMVENVKHVIADQEVMETNRVE VKHVIADQEVMETNRVESVEPSENEASKEL K H V N R V 1 1 1 1 0 1 2 0 1 1 0 0 1 0 0 0 1 0 0 2 0 0 13 0 1540.7304 Q9H307 Q9H307 398 410 PNN Pinin yes yes 2;3 2.6589E-05 104.79 By MS/MS By MS/MS 2 2 1.0167 0.95735 18.537 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0167 1.0338 8.8641 2 2 Median 1.0057 0.81846 20.167 2 1 Median 28055000 14488000 13567000 0 0 0 0 0 0 0 0 0 0 0 0 25017000 13030000 11988000 3037600 1458300 1579200 13824 3950 14387 70573;70574;70575;70576 71477;71478;71479;71480 71478 4 HVIADQEVMETNRVESVEPSENEASK PEEVMDVLEMVENVKHVIADQEVMETNRVE NRVESVEPSENEASKELEPEMEFEIEPDKE K H V S K E 2 1 2 1 0 1 6 0 1 1 0 1 1 0 1 3 1 0 0 4 0 0 26 1 2926.3614 Q9H307 Q9H307 398 423 PNN Pinin yes yes 4 2.2687E-13 57.922 By MS/MS 1 0.76383 0.84013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76383 0.84013 NaN 1 0 Median NaN NaN NaN 0 0 Median 9216600 4968000 4248700 0 0 0 0 0 0 0 0 0 0 0 0 9216600 4968000 4248700 0 0 0 13825 3950 14388 70577 71481 71481 1 HVILSEIK RRKVLYQRAPRNIHRHVILSEIKEAVAALP APRNIHRHVILSEIKEAVAALPPDVTTQSV R H V I K E 0 0 0 0 0 0 1 0 1 2 1 1 0 0 0 1 0 0 0 1 0 0 8 0 937.55967 Q9BQ70;H3BQ53;Q9H384 Q9BQ70 558 565 TCF25 Transcription factor 25 yes no 2 0.02294 44.531 By MS/MS By matching By matching By matching 1 3 1 2 1.1854 1.0999 19.253 7 Median 0.94588 0.94668 NaN 1 0 Median 1.2735 1.0999 26.438 3 0 Median 1.167 1.2404 NaN 1 0 Median 1.2352 1.0678 8.1868 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11095000 4529900 6565600 1454100 784790 669340 5387500 2061000 3326600 2733600 1014800 1718800 1520200 669300 850850 0 0 0 0 0 0 13826 3786 14389 70578;70579;70580;70581;70582;70583;70584 71482 71482 1 HVINFDLPSDIEEYVHR ATAVAARGLDISNVKHVINFDLPSDIEEYV INFDLPSDIEEYVHRIGRTGRVGNLGLATS K H V H R I 0 1 1 2 0 0 2 0 2 2 1 0 0 1 1 1 0 0 1 2 0 0 17 0 2082.0171 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 511 527 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 5.9657E-14 153.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 2 1 0.84481 0.76936 64.255 14 Median 0.85018 0.82334 8.3408 2 0 Median 0.80004 0.69288 29.912 4 0 Median 0.80166 0.80701 58.54 5 3 Median NaN NaN NaN 0 0 Median 0.36657 0.39952 141.64 2 0 Median 0.88287 0.7083 NaN 1 0 Median 64002000 33245000 30757000 10389000 5556500 4832700 24112000 12353000 11760000 13321000 6598300 6722200 0 0 0 2749500 2042600 706860 13431000 6695400 6735400 13827 263 14390 70585;70586;70587;70588;70589;70590;70591;70592;70593;70594;70595;70596;70597;70598 71483;71484;71485;71486;71487;71488;71489;71490;71491;71492;71493;71494;71495;71496 71495 14 HVIPMNPNTDDLFK VNWINKALENDPDCRHVIPMNPNTDDLFKA RHVIPMNPNTDDLFKAVGDGIVLCKMINLS R H V F K A 0 0 2 2 0 0 0 0 1 1 1 1 1 1 2 0 1 0 0 1 0 0 14 0 1639.8028 P13797;A0A0A0MSQ0;U3KQI3 P13797 145 158 PLS3 Plastin-3 yes no 2;3 7.1243E-07 133.89 By MS/MS By MS/MS By MS/MS By matching 4 4 3 2 0.87673 0.79576 26.803 13 Median 0.74375 0.69141 5.2347 4 0 Median 0.90359 0.76305 13.158 4 0 Median 1.0888 1.1338 31.919 3 0 Median 1.0074 0.86375 10.059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 212410000 115290000 97120000 157870000 87007000 70861000 39738000 20707000 19031000 12747000 6444800 6302100 2057000 1131400 925540 0 0 0 0 0 0 13828 1995 14391;14392 70599;70600;70601;70602;70603;70604;70605;70606;70607;70608;70609;70610;70611 71497;71498;71499;71500;71501;71502;71503;71504;71505;71506;71507;71508;71509;71510 71501 786 14 HVISYSLSPFEQR ______________________________ MRHVISYSLSPFEQRAYPHVFTKGIPNVLR R H V Q R A 0 1 0 0 0 1 1 0 1 1 1 0 0 1 1 3 0 0 1 1 0 0 13 0 1561.7889 O14949 O14949 13 25 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2;3 3.8838E-07 109.42 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 2 1 1 1.0755 1.0601 28.671 10 Median 1.0688 1.0337 14.954 4 1 Median 1.4585 1.2417 2.1067 2 0 Median 0.97298 0.98678 14.182 2 0 Median NaN NaN NaN 0 0 Median 1.397 1.4901 NaN 1 0 Median 0.69995 0.5326 NaN 1 0 Median 171400000 78558000 92843000 120090000 56134000 63958000 35381000 14399000 20982000 14158000 7054600 7103500 0 0 0 850060 425180 424890 920600 545290 375310 13829 1505 14393 70612;70613;70614;70615;70616;70617;70618;70619;70620;70621 71511;71512;71513;71514;71515;71516;71517;71518;71519;71520;71521;71522;71523;71524 71514 14 HVKDEQIEHWK SLGQALEVVIQLQEKHVKDEQIEHWKKIVK LQEKHVKDEQIEHWKKIVKTQEELKELLNK K H V W K K 0 0 0 1 0 1 2 0 2 1 0 2 0 0 0 0 0 1 0 1 0 0 11 1 1447.7208 O60341;R4GMQ1 O60341 422 432 KDM1A Lysine-specific histone demethylase 1A yes no 3 0.010447 30.55 By matching By MS/MS 1 1 1.1496 1.1992 26.064 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87301 0.99739 NaN 1 0 Median 1.5137 1.4419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2010300 1002900 1007500 0 0 0 0 0 0 874290 520850 353440 1136000 482000 654030 0 0 0 0 0 0 13830 1613 14394 70622;70623 71525 71525 1 HVLDALDPNAYEAFK IRLIKHDLKMNSGAKHVLDALDPNAYEAFK HVLDALDPNAYEAFKASRNLQDVVERVLHN K H V F K A 3 0 1 2 0 0 1 0 1 0 2 1 0 1 1 0 0 0 1 1 0 0 15 0 1701.8362 P49916;K7ERZ5;K7EQB6 P49916 428 442 LIG3 DNA ligase 3 yes no 2;3 0.0003509 56.783 By matching By MS/MS By matching 1 2 2 0.94335 1.0419 86.43 5 Median NaN NaN NaN 0 0 Median 4.7724 4.801 NaN 1 0 Median 0.84221 0.93007 16.057 2 0 Median 0.78626 0.72369 63.413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10348000 5145900 5202600 0 0 0 504740 60486 444250 9485800 4893200 4592600 357900 192160 165740 0 0 0 0 0 0 13831 2406 14395 70624;70625;70626;70627;70628 71526;71527;71528;71529 71528 4 HVLDTLIQLAK STVHIHPQAAPVVCRHVLDTLIQLAKVFPS VVCRHVLDTLIQLAKVFPSHFTQQRTKETN R H V A K V 1 0 0 1 0 1 0 0 1 1 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1249.7394 Q7Z6Z7;H0Y659 Q7Z6Z7 3335 3345 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.00014865 88.819 By MS/MS By MS/MS 2 3 1.279 1.0978 14.818 5 Median 0.89042 0.87503 9.1478 2 0 Median 1.2996 1.1336 2.6518 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36840000 16923000 19917000 16888000 8602300 8285500 19952000 8320700 11632000 0 0 0 0 0 0 0 0 0 0 0 0 13832 3253 14396 70629;70630;70631;70632;70633 71530;71531;71532 71531 3 HVLFPLK EPGNVENNGVLSFIKHVLFPLKSEFVILRD NGVLSFIKHVLFPLKSEFVILRDEKWGGNK K H V L K S 0 0 0 0 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 1 0 0 7 0 852.52216 P54577;A0A0C4DGZ5 P54577 266 272 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.01784 64.563 By MS/MS By MS/MS By matching 1 1 1 0.95958 0.90459 5.0734 3 Plateau 0.92576 0.87771 NaN 1 0 Median 1.0907 0.91175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95958 0.82459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25070000 12174000 12896000 7971400 4150900 3820500 16514000 7702100 8811700 0 0 0 584920 320800 264120 0 0 0 0 0 0 13833 2482 14397 70634;70635;70636 71533;71534;71535;71536;71537 71533 5 HVLHVQLNRPNK PDHSYESLRVTSAQKHVLHVQLNRPNKRNA AQKHVLHVQLNRPNKRNAMNKVFWREMVEC K H V N K R 0 1 2 0 0 1 0 0 2 0 2 1 0 0 1 0 0 0 0 2 0 0 12 1 1453.8266 M0QYT0;Q13011;M0R248;M0QZW4 M0QYT0 236 247 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial no no 2;3 7.9814E-05 84.17 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.187 1.0611 16.016 5 Median 0.85626 0.85692 NaN 1 0 Median 1.2096 1.095 4.4481 2 0 Median 0.7983 0.8762 NaN 1 0 Median 1.3105 1.2368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21025000 10243000 10782000 7455100 4084000 3371100 8423600 3790300 4633300 1833200 954030 879190 3312900 1414800 1898100 0 0 0 0 0 0 13834 1419;2778 14398 70637;70638;70639;70640;70641 71538;71539;71540;71541;71542;71543;71544;71545 71541 8 HVLHVQLNRPNKR PDHSYESLRVTSAQKHVLHVQLNRPNKRNA QKHVLHVQLNRPNKRNAMNKVFWREMVECF K H V K R N 0 2 2 0 0 1 0 0 2 0 2 1 0 0 1 0 0 0 0 2 0 0 13 2 1609.9277 M0QYT0;Q13011;M0R248;M0QZW4 M0QYT0 236 248 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial no no 3;4 0.00026266 63.408 By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 0.89508 1.0511 25.895 9 Median 0.83906 0.8794 6.1192 2 0 Median 1.185 1.3902 4.0651 3 0 Plateau 0.88024 1.0337 2.3643 2 0 Median 1.0007 1.0237 53.978 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10355000 5065800 5289600 4379900 2283800 2096100 3057600 1355900 1701700 1329100 671160 657920 1588800 754950 833820 0 0 0 0 0 0 13835 1419;2778 14399 70642;70643;70644;70645;70646;70647;70648;70649;70650 71546;71547;71548;71549;71550;71551;71552;71553;71554;71555;71556 71550 11 HVLLTIK VNVLKRDWTAELGIRHVLLTIKCLLIHPNP WTAELGIRHVLLTIKCLLIHPNPESALNEE R H V I K C 0 0 0 0 0 0 0 0 1 1 2 1 0 0 0 0 1 0 0 1 0 0 7 0 822.53272 Q16763 Q16763 111 117 UBE2S Ubiquitin-conjugating enzyme E2 S yes yes 2 0.003648 103.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.93135 0.79599 45.502 5 Median 1.3761 1.2987 NaN 1 0 Median 0.93135 0.79599 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.84201 0.69723 NaN 1 0 Median 1.9831 2.0278 NaN 1 1 Median 0.89583 0.75385 NaN 1 1 Median 10316000 4627800 5688100 2805400 1253000 1552400 1055700 571580 484120 0 0 0 2371800 1187000 1184700 2582900 833610 1749300 1500100 782560 717550 13836 2997 14400 70651;70652;70653;70654;70655;70656 71557;71558;71559;71560;71561;71562;71563;71564 71561 8 HVLSVLSK ASFGGLASRTPAVHRHVLSVLSKTKEAGKI RTPAVHRHVLSVLSKTKEAGKILSNNPSKG R H V S K T 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 2 0 0 0 2 0 0 8 0 881.53345 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y7I7 A0A2R8Y430 165 172 GSS Glutathione synthetase yes no 2 2.7881E-05 157.58 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.6077 1.3625 17.439 5 Median 1.1799 1.1064 NaN 1 0 Median 1.8053 1.5416 17.462 2 0 Median 1.1988 1.2209 NaN 1 0 Median 1.6699 1.4649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20843000 8527200 12315000 6899500 2857400 4042100 12060000 4726600 7333400 1514500 816040 698490 368540 127060 241470 0 0 0 0 0 0 13837 358 14401 70657;70658;70659;70660;70661 71565;71566;71567;71568 71568 4 HVLTGSADNSCR HTGAVWCVDADWDTKHVLTGSADNSCRLWD DTKHVLTGSADNSCRLWDCETGKQLALLKT K H V C R L 1 1 1 1 1 0 0 1 1 0 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1315.5939 Q13347;Q5TFK1 Q13347 66 77 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.031417 27.742 By MS/MS 1 1.0593 0.91261 NaN 1 Median NaN NaN NaN 0 0 Median 1.0593 0.91261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 417720 178610 239110 0 0 0 417720 178610 239110 0 0 0 0 0 0 0 0 0 0 0 0 13838 2806 14402 70662 71569 71569 1 HVLTTLGEK FDKEGNGKVMGAELRHVLTTLGEKMTEEEV MGAELRHVLTTLGEKMTEEEVETVLAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 996.5604 P14649 P14649 168 176 MYL6B Myosin light chain 6B yes yes 2 0.004116 61.679 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.1594 0.9995 16.993 6 Median 1.1356 1.0641 NaN 1 0 Median 1.4913 1.2746 NaN 1 1 Median 0.87805 0.84517 NaN 1 0 Median 1.222 1.0007 NaN 1 0 Median 0.76998 0.79102 NaN 1 0 Median 1.1837 0.99833 NaN 1 0 Median 8003900 3881600 4122400 3473200 1714500 1758700 900400 335110 565290 1962400 958810 1003600 313440 162540 150900 1120400 612760 507640 234050 97831 136220 13839 2008 14403 70663;70664;70665;70666;70667;70668 71570;71571;71572;71573;71574 71570 5 HVLVTLGEK FDKEGNGTVMGAEIRHVLVTLGEKMTEEEV MGAEIRHVLVTLGEKMTEEEVEMLVAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 994.58113 F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;G3V1Y7;F8VPF3;F8VZU9;F8W180;H0YI43;F8VXL3 F8W1R7 111 119 MYL6 Myosin light polypeptide 6 yes no 2 1.6965E-11 180.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 2 3 1.2714 1.1418 15.167 13 Median 1.2468 1.1418 10.227 3 0 Median 1.5215 1.2728 19.47 3 0 Median 0.88769 0.84261 NaN 1 0 Median 1.2908 1.0478 NaN 1 0 Median 1.085 1.1613 20.368 2 0 Median 1.4559 1.1559 12.976 3 0 Median 795720000 363700000 432020000 193710000 86803000 106910000 532910000 242040000 290860000 33736000 17753000 15984000 2010900 843480 1167400 21831000 11240000 10591000 11529000 5017900 6510900 13840 1082 14404 70669;70670;70671;70672;70673;70674;70675;70676;70677;70678;70679;70680;70681 71575;71576;71577;71578;71579;71580;71581;71582;71583;71584;71585;71586;71587;71588;71589;71590;71591;71592;71593;71594;71595;71596;71597;71598;71599;71600 71591 26 HVMDGSLPTSLK LKKAIQDPAFSDGIRHVMDGSLPTSLKHII GIRHVMDGSLPTSLKHIISNAEYYGPSLFL R H V L K H 0 0 0 1 0 0 0 1 1 0 2 1 1 0 1 2 1 0 0 1 0 0 12 0 1283.6544 Q7Z6Z7;A0A087X1S3 Q7Z6Z7 530 541 HUWE1 E3 ubiquitin-protein ligase HUWE1 no no 2;3 1.5045E-14 182.64 By MS/MS By MS/MS 4 1 0.95054 0.95228 8.4504 4 Median 0.95125 0.95445 9.1018 3 1 Plateau 1.0992 0.97924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55693000 28929000 26765000 34555000 17582000 16973000 21138000 11347000 9791400 0 0 0 0 0 0 0 0 0 0 0 0 13841 3253;123 14405;14406 70682;70683;70684;70685;70686 71601;71602;71603;71604;71605;71606 71606 66 6 HVMDVVDEELSK EEKFRERLKELVVPKHVMDVVDEELSKLGL VPKHVMDVVDEELSKLGLLDNHSSEFNVTR K H V S K L 0 0 0 2 0 0 2 0 1 0 1 1 1 0 0 1 0 0 0 3 0 0 12 0 1399.6653 K7EKE6;P36776;K7EJE8;K7ER27;K7ER56 K7EKE6 319 330 LONP1 Lon protease homolog, mitochondrial yes no 2 4.0203E-06 143.24 By MS/MS By MS/MS By MS/MS 1 1 1 0.85502 0.82525 31.182 3 Median 0.85502 0.82525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8607 0.93589 NaN 1 1 Median 0.60703 0.51781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34479000 18492000 15987000 16915000 8795200 8119400 0 0 0 15130000 8149800 6980000 2435000 1547000 888000 0 0 0 0 0 0 13842 1370 14407 70687;70688;70689 71607;71608;71609;71610 71609 4 HVMQLEKDPK DFAINVCTLLSNESKHVMQLEKDPKIITLL SNESKHVMQLEKDPKIITLLLANAGVFDDT K H V P K I 0 0 0 1 0 1 1 0 1 0 1 2 1 0 1 0 0 0 0 1 0 0 10 1 1223.6332 Q68CP9;F8WCU9 Q68CP9 189 198 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.073707 13.091 By MS/MS 1 0.64576 0.74057 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64576 0.74057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 507570 306590 200980 0 0 0 0 0 0 507570 306590 200980 0 0 0 0 0 0 0 0 0 13843 3122 14408 70690 71611 71611 1 HVMQPYYK VGLNALEEWSIYIDRHVMQPYYKDILPCLD WSIYIDRHVMQPYYKDILPCLDGYLKTSAL R H V Y K D 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 1 0 0 8 0 1064.5113 P78527 P78527 783 790 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0035916 86.866 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 2 0.90184 0.85905 38.458 12 Median 0.53334 0.51955 67.806 2 0 Median 1.2374 1.0888 5.067 3 0 Median 0.78702 0.85905 2.5402 2 0 Median 1.151 1.0837 8.8538 2 0 Median 0.76514 0.80358 NaN 1 0 Median 0.64439 0.61079 37.721 2 0 Median 59745000 30033000 29711000 6043700 3448100 2595600 26842000 12313000 14529000 15378000 8510000 6868200 4811400 2191400 2619900 3972100 2231300 1740800 2697500 1339600 1358000 13844 2647 14409 70691;70692;70693;70694;70695;70696;70697;70698;70699;70700;70701;70702 71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630 71621 19 HVMSNTGNWMHIR SYILLQFAQYGNILKHVMSNTGNWMHIRYQ LKHVMSNTGNWMHIRYQSKLQARKALSKDG K H V I R Y 0 1 2 0 0 0 0 1 2 1 0 0 2 0 0 1 1 1 0 1 0 0 13 0 1581.7293 Q8NFH5 Q8NFH5 202 214 NUP35 Nucleoporin NUP53 yes yes 3 2.3871E-06 132.59 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3048 1.2287 20.726 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0815 1.0513 NaN 1 0 Median 1.4178 1.2025 NaN 1 0 Median 1.2008 1.2555 NaN 1 0 Median 1.9611 1.716 NaN 1 0 Median 34983000 15554000 19429000 0 0 0 0 0 0 22614000 10365000 12249000 7155000 2948900 4206100 4709900 2089700 2620200 503810 150100 353720 13845 3437 14410 70703;70704;70705;70706 71631;71632;71633;71634;71635 71634 5 HVPGGGNVQIQNK YSHIQSKCGSKDNIKHVPGGGNVQIQNKKV IKHVPGGGNVQIQNKKVDISKVSSKCGSKA K H V N K K 0 0 2 0 0 2 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 13 0 1346.7055 E7EVA0;P27816;H0Y2V1;F8W9U4 E7EVA0 2161 2173 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.0061317 29.544 By matching By matching By MS/MS By MS/MS 1 1 2 7 0.88113 0.78494 56.97 11 Median 0.8658 0.83591 NaN 1 0 Median 0.96845 0.82856 NaN 1 0 Median 0.54536 0.56657 164.02 2 1 Median 0.88113 0.78493 23.088 7 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9087100 5857700 3229400 448350 251570 196780 1233200 594160 639000 4294300 3483600 810730 3111300 1528400 1582900 0 0 0 0 0 0 13846 895 14411 70707;70708;70709;70710;70711;70712;70713;70714;70715;70716;70717 71636;71637;71638;71639;71640 71637 5 HVPGSPFTVK TEPGTYIINIKFADKHVPGSPFTVKVTGEG KFADKHVPGSPFTVKVTGEGRMKESITRRR K H V V K V 0 0 0 0 0 0 0 1 1 0 0 1 0 1 2 1 1 0 0 2 0 0 10 0 1067.5764 Q14315 Q14315 2118 2127 FLNC Filamin-C yes yes 2 0.00070642 72.042 By MS/MS By MS/MS 2 1 0.8724 0.79273 7.3258 3 Median NaN NaN NaN 0 0 Median 0.85215 0.75773 6.3864 2 0 Median NaN NaN NaN 0 0 Median 0.8724 0.83735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29199000 15706000 13493000 0 0 0 27338000 14805000 12533000 0 0 0 1860800 900420 960390 0 0 0 0 0 0 13847 2871 14412 70718;70719;70720 71641;71642;71643;71644 71641 4 HVPLSGSQIVK IQAPADFAPECFNGRHVPLSGSQIVKGKLA FNGRHVPLSGSQIVKGKLAGKRHRYRVLSS R H V V K G 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 2 0 0 0 2 0 0 11 0 1163.6663 O15446 O15446 60 70 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 2 0.030035 31.494 By MS/MS By MS/MS By matching 1 1 1 0.71898 0.61334 24.984 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82488 0.83172 NaN 1 0 Median 0.71898 0.61334 NaN 1 0 Median 0.49079 0.50682 NaN 1 0 Median NaN NaN NaN 0 0 Median 18068000 10038000 8030500 0 0 0 0 0 0 13499000 7559000 5940400 2041300 1083200 958190 2527500 1395700 1131900 0 0 0 13848 1548 14413 70721;70722;70723 71645;71646;71647 71645 3 HVPPLTEEQLNR YEEDWEVFDPYYFIKHVPPLTEEQLNRKPA FIKHVPPLTEEQLNRKPALPLKTRSTPEFS K H V N R K 0 1 1 0 0 1 2 0 1 0 2 0 0 0 2 0 1 0 0 1 0 0 12 0 1431.747 Q05D32;H0YMB4 Q05D32 263 274 CTDSPL2 CTD small phosphatase-like protein 2 yes no 2 0.00042336 79.148 By MS/MS By MS/MS 1 1 0.66927 0.62126 14.822 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55934 0.55945 NaN 1 0 Median 0.80082 0.68991 NaN 1 0 Median 12978000 7542400 5435600 0 0 0 0 0 0 0 0 0 0 0 0 9469000 5791200 3677800 3508900 1751100 1757800 13849 2720 14414 70724;70725 71648;71649 71648 2 HVPSLILETK VKRIRDAIRMGLSARHVPSLILETKGIPYT GLSARHVPSLILETKGIPYTLNGKKVEVAV R H V T K G 0 0 0 0 0 0 1 0 1 1 2 1 0 0 1 1 1 0 0 1 0 0 10 0 1135.6601 Q86V21 Q86V21 615 624 AACS Acetoacetyl-CoA synthetase yes yes 2 0.04531 29.473 By MS/MS By matching 1 1 0.80082 0.71642 1.7591 2 Median 0.7445 0.70757 NaN 1 0 Median 0.8614 0.72539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14559000 8414000 6144700 7253500 4173000 3080500 7305200 4241000 3064200 0 0 0 0 0 0 0 0 0 0 0 0 13850 3284 14415 70726;70727 71650 71650 1 HVQELAEQLYK ARMRADENHPQRVLRHVQELAEQLYKNENP RVLRHVQELAEQLYKNENPYPAVAMHKVQR R H V Y K N 1 0 0 0 0 2 2 0 1 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1356.7038 O95248 O95248 467 477 SBF1 Myotubularin-related protein 5 yes yes 2 0.0068249 62.823 By MS/MS 1 1.3357 1.181 NaN 1 Median NaN NaN NaN 0 0 Median 1.3357 1.181 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2117300 958780 1158600 0 0 0 2117300 958780 1158600 0 0 0 0 0 0 0 0 0 0 0 0 13851 1758 14416 70728 71651 71651 1 HVQGILR ______________________________ SLKLNGGRHVQGILRGFDPFMNLVIDECVE R H V L R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 Q49AN9;F5H013;P62308;A8MWD9;C9JVQ0 Q49AN9 14 20 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 3.4146E-06 159.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 2 2 1.2591 1.0566 14.245 14 Median 1.0804 1.0659 6.3727 2 0 Median 1.5028 1.2155 7.0308 2 0 Median 0.85318 0.87376 28.632 2 0 Median 1.2979 0.97732 7.333 4 0 Median 1.1138 1.1509 0.3484 2 0 Median 1.3569 1.0575 8.0287 2 0 Median 367960000 170200000 197760000 8010400 3737600 4272700 40196000 16591000 23605000 168890000 81120000 87771000 51067000 22072000 28995000 82430000 39002000 43428000 17361000 7676200 9684400 13852 547 14417 70729;70730;70731;70732;70733;70734;70735;70736;70737;70738;70739;70740;70741;70742 71652;71653;71654;71655;71656;71657;71658;71659;71660;71661;71662;71663;71664;71665;71666;71667 71660 16 HVQIIMEK ILEVLYRKDVGPTQRHVQIIMEKLLRTVNR DVGPTQRHVQIIMEKLLRTVNRTVISMGRD R H V E K L 0 0 0 0 0 1 1 0 1 2 0 1 1 0 0 0 0 0 0 1 0 0 8 0 996.54264 A0A096LNH6;Q14185 A0A096LNH6 923 930 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.063161 31.935 By matching By MS/MS 1 1 0.38068 0.38874 114.09 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15134 0.1735 NaN 1 0 Median 0.95752 0.871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2110100 1452800 657330 0 0 0 0 0 0 1244800 1107800 137050 865310 345030 520280 0 0 0 0 0 0 13853 140 14418 70743;70744 71668 71668 1 HVQLLGR HLPPSNRYETLLKQRHVQLLGRSIDLNRLI YETLLKQRHVQLLGRSIDLNRLITQRVSAA R H V G R S 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 754 760 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.0069585 91.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 3 3 1.205 1.115 9.5504 17 Median 1.1318 1.0824 5.5716 4 0 Median 1.3589 1.1461 6.8371 3 0 Median 1.0982 1.1516 0.8075 2 0 Median 1.266 1.0345 1.826 2 0 Median 1.1072 1.1481 19.435 3 0 Median 1.2818 0.99918 11.091 3 0 Median 177610000 80641000 96968000 14298000 6579800 7718200 47141000 19944000 27197000 5378200 2575000 2803200 10179000 4441400 5737400 83177000 39377000 43800000 17436000 7724100 9712200 13854 3224;897 14419 70745;70746;70747;70748;70749;70750;70751;70752;70753;70754;70755;70756;70757;70758;70759;70760;70761 71669;71670;71671;71672;71673;71674;71675;71676;71677;71678;71679;71680;71681;71682;71683;71684;71685;71686 71674 18 HVQNGLDSSVNVQGSVL EKAVSGKGNRTVGSRHVQNGLDSSVNVQGS QNGLDSSVNVQGSVL_______________ R H V V L - 0 0 2 1 0 2 0 2 1 0 2 0 0 0 0 3 0 0 0 4 0 0 17 0 1751.8802 Q15007 Q15007 380 396 WTAP Pre-mRNA-splicing regulator WTAP yes yes 2 1.6315E-08 82.171 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3335200 0 0 0 0 0 0 0 0 3335200 0 0 0 0 0 0 0 0 0 0 0 13855 2910 14420 70762 71687 71687 1 HVSAYGPGLSHGMVNK PGSPLQFYVDAINSRHVSAYGPGLSHGMVN VSAYGPGLSHGMVNKPATFTIVTKDAGEGG R H V N K P 1 0 1 0 0 0 0 3 2 0 1 1 1 0 1 2 0 0 1 2 0 0 16 0 1652.8093 Q14315 Q14315 1861 1876 FLNC Filamin-C yes yes 3 3.045E-05 68.751 By MS/MS 1 1.682 1.4706 NaN 1 Median NaN NaN NaN 0 0 Median 1.682 1.4706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5851700 2475800 3375900 0 0 0 5851700 2475800 3375900 0 0 0 0 0 0 0 0 0 0 0 0 13856 2871 14421 70763 71688;71689 71689 2 HVSAYGPGLSHGMVNKPATFTIVTK PGSPLQFYVDAINSRHVSAYGPGLSHGMVN HGMVNKPATFTIVTKDAGEGGLSLAVEGPS R H V T K D 2 0 1 0 0 0 0 3 2 1 1 2 1 1 2 2 3 0 1 3 0 0 25 1 2611.3581 Q14315 Q14315 1861 1885 FLNC Filamin-C yes yes 3;4 3.7771E-30 111.97 By MS/MS By MS/MS 5 4 0.91307 0.96665 18.62 9 Median 1.0058 0.99468 20.265 5 0 Median 0.84417 0.81328 12.05 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192210000 94034000 98179000 118420000 56768000 61653000 73792000 37266000 36526000 0 0 0 0 0 0 0 0 0 0 0 0 13857 2871 14422;14423 70764;70765;70766;70767;70768;70769;70770;70771;70772 71690;71691;71692;71693;71694;71695;71696;71697;71698 71697 1568 9 HVSIQEAESYAESVGAK CLCIVGNKIDLEKERHVSIQEAESYAESVG SIQEAESYAESVGAKHYHTSAKQNKGIEEL R H V A K H 3 0 0 0 0 1 3 1 1 1 0 1 0 0 0 3 0 0 1 2 0 0 17 0 1803.8639 Q9UL25 Q9UL25 141 157 RAB21 Ras-related protein Rab-21 yes yes 2;3 6.3196E-06 72.446 By MS/MS By MS/MS By matching 3 2 1 1.1759 1.0421 29.135 6 Median 1.1425 1.0607 8.7786 3 0 Median 0.86536 0.74611 44.753 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4536 1.2274 NaN 1 0 Median 29148000 14783000 14365000 25807000 13185000 12622000 3116100 1509000 1607000 0 0 0 0 0 0 0 0 0 225190 89385 135800 13858 4320 14424 70773;70774;70775;70776;70777;70778 71699;71700;71701;71702;71703 71700 5 HVSLMDQR DDHQDYAEALINPIKHVSLMDQRARQLAAL ALINPIKHVSLMDQRARQLAALIGESEAQA K H V Q R A 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 8 0 984.4811 Q01970 Q01970 865 872 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.028842 40.103 By matching By MS/MS 1 1 1.0046 0.96889 1.1528 2 Median NaN NaN NaN 0 0 Median 1.126 0.96103 NaN 1 0 Median 0.89637 0.97682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4928500 2255100 2673500 0 0 0 3134000 1494900 1639200 1794500 760200 1034300 0 0 0 0 0 0 0 0 0 13859 2695 14425 70779;70780 71704 71704 1 HVSLPSFNQLFGLSDPVNR ______________________________ PSFNQLFGLSDPVNRAYFAVFDGHGGVDAA R H V N R A 0 1 2 1 0 1 0 1 1 0 3 0 0 2 2 3 0 0 0 2 0 0 19 0 2126.0909 B5MCT7;P49593;C9J2F3;A8MX49 B5MCT7 5 23 PPM1F Protein phosphatase 1F yes no 3 0.057023 8.6005 By MS/MS By matching 1 1 0.91359 0.84342 26.221 2 Median 0.71796 0.70068 NaN 1 0 Median 1.1625 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1287700 652080 635660 542810 314900 227910 744930 337180 407750 0 0 0 0 0 0 0 0 0 0 0 0 13860 619 14426 70781;70782 71705;71706 71705 2 HVSPAGAAVGIPLSEDEAK ELKEALGIPAAASFKHVSPAGAAVGIPLSE AGAAVGIPLSEDEAKVCMVYDLYKTLTPIS K H V A K V 4 0 0 1 0 0 2 2 1 1 1 1 0 0 2 2 0 0 0 2 0 0 19 0 1846.9425 P31939 P31939 267 285 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 2;3 3.0642E-08 69.737 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.84676 0.72343 12.297 5 Median 0.84676 0.78623 NaN 1 0 Median 0.85022 0.71566 1.5257 2 0 Median 0.91223 0.93055 NaN 1 0 Median 0.79637 0.68461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66458000 34991000 31467000 41913000 21868000 20045000 20368000 10977000 9390900 3435900 1700000 1735900 741750 445860 295890 0 0 0 0 0 0 13861 2207 14427 70783;70784;70785;70786;70787 71707;71708;71709;71710;71711;71712 71708 6 HVSPLIGR TGAVATALGLNALTKHVSPLIGRFVPFAAV GLNALTKHVSPLIGRFVPFAAVAAANCINI K H V G R F 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 1 0 0 0 1 0 0 8 0 877.51339 Q9H9B4;D6RFI0 Q9H9B4 171 178 SFXN1 Sideroflexin-1 yes no 2 0.01997 69.998 By MS/MS By MS/MS 1 2 1.0611 0.93562 20.968 2 Median 0.86266 0.80669 NaN 1 1 Median 1.3051 1.0851 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55924000 27384000 28539000 27951000 15231000 12720000 27973000 12154000 15819000 0 0 0 0 0 0 0 0 0 0 0 0 13862 3998 14428 70788;70789;70790 71713;71714;71715 71713 3 HVTFNQVK GMSSGFYKNVVKIQKHVTFNQVKGIFGFTD NVVKIQKHVTFNQVKGIFGFTDSDCIGKIS K H V V K G 0 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 971.51886 P23381;G3V3Y5;G3V3H8;H0YJP3 P23381 257 264 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 4.4064E-06 119.29 By MS/MS 1 1.3825 1.1755 NaN 1 Median NaN NaN NaN 0 0 Median 1.3825 1.1755 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5959400 2595900 3363500 0 0 0 5959400 2595900 3363500 0 0 0 0 0 0 0 0 0 0 0 0 13863 2111 14429 70791 71716 71716 1 HVTFYQDLILSAGQGR SSTPTTIFPIRAPQKHVTFYQDLILSAGQG VTFYQDLILSAGQGRCVNQWQLSGELKAQV K H V G R C 1 1 0 1 0 2 0 2 1 1 2 0 0 1 0 1 1 0 1 1 0 0 16 0 1803.9268 Q86W42 Q86W42 263 278 THOC6 THO complex subunit 6 homolog yes yes 2;3 2.7203E-05 71.344 By matching By MS/MS 1 2 0.9968 0.98738 31.604 3 Median NaN NaN NaN 0 0 Median 1.393 1.2038 NaN 1 0 Median 0.81988 0.80007 29.749 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7074300 3607700 3466600 0 0 0 259490 200650 58844 6814800 3407100 3407800 0 0 0 0 0 0 0 0 0 13864 3290 14430 70792;70793;70794 71717;71718;71719 71718 3 HVTNSPFK KEVGEHVVSVRKSGKHVTNSPFKILVGPSE SVRKSGKHVTNSPFKILVGPSEIGDASKVR K H V F K I 0 0 1 0 0 0 0 0 1 0 0 1 0 1 1 1 1 0 0 1 0 0 8 0 928.47667 Q14315 Q14315 2023 2030 FLNC Filamin-C yes yes 2 0.022726 44.692 By matching By MS/MS 1 1 1.2431 1.1651 24.438 2 Median 0.98162 0.98021 NaN 1 0 Median 1.5742 1.3849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1045600 437660 607990 84422 41656 42767 961220 396000 565220 0 0 0 0 0 0 0 0 0 0 0 0 13865 2871 14431 70795;70796 71720;71721;71722;71723 71721 4 HVTVVGELSR ENYPQFKKMSGTVSKHVTVVGELSRLVSER GTVSKHVTVVGELSRLVSERNLLEVSEVEQ K H V S R L 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 3 0 0 10 0 1095.6037 A0A087WU65;A0A2R8YE10;Q9NRW7;A0A2R8YD95;A0A2R8YF01;A0A1B0GXI6;A0A2R8YEX8 A0A087WU65 208 217 VPS45 Vacuolar protein sorting-associated protein 45 yes no 2 0.00040525 122.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.4394 1.2648 30.832 5 Median 1.3115 1.2648 NaN 1 0 Median 1.4394 1.2456 NaN 1 0 Median 1.5131 1.5901 NaN 1 0 Median 1.6822 1.4041 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82917 0.71219 NaN 1 0 Median 19790000 8244700 11546000 6382400 2823300 3559100 7798900 2806300 4992600 2300300 955150 1345200 1754600 766350 988210 0 0 0 1554100 893560 660520 13866 27 14432 70797;70798;70799;70800;70801 71724;71725;71726;71727;71728;71729;71730 71728 7 HVTYVVAK LRSLYKKAGLGKEKRHVTYVVAKKGVGRKV GLGKEKRHVTYVVAKKGVGRKVRRPAGVRG R H V A K K 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 3 0 0 8 0 915.5178 Q8IY81 Q8IY81 797 804 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.0096746 60.358 By matching By MS/MS By MS/MS 1 5 2 1.1168 1.1136 8.9391 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86034 0.90787 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1173 1.1175 3.0953 5 0 Median 1.2246 1.0432 10.861 2 0 Median 6476100 3046900 3429200 0 0 0 0 0 0 124140 70353 53787 0 0 0 5689400 2667100 3022300 662520 309400 353110 13867 3338 14433 70802;70803;70804;70805;70806;70807;70808;70809 71731;71732;71733 71731 3 HVVAVVLGDVGR LLGGWKRWRRGRAARHVVAVVLGDVGRSPR AARHVVAVVLGDVGRSPRMQYHALSLAMHG R H V G R S 1 1 0 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 5 0 0 12 0 1219.7037 Q9BT22;K7EPU3;K7EQK1 Q9BT22 34 45 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 2 3.1802E-06 109.66 By matching By MS/MS 2 2 0.44856 0.42552 122.42 4 Median 0.44856 0.44254 102.02 2 0 Median 0.28659 0.24265 175.91 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27910000 19834000 8076100 16616000 11981000 4635600 11294000 7853500 3440500 0 0 0 0 0 0 0 0 0 0 0 0 13868 3821 14434 70810;70811;70812;70813 71734;71735;71736 71734 3 HVVFGEVTEGLDVLR QFFLTCDKTDWLDGKHVVFGEVTEGLDVLR HVVFGEVTEGLDVLRQIEAQGSKDGKPKQK K H V L R Q 0 1 0 1 0 0 2 2 1 0 2 0 0 1 0 0 1 0 0 4 0 0 15 0 1668.8835 Q9UNP9;E9PKY5;E9PEQ6 Q9UNP9 262 276 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 3 0.00025822 44.457 By matching By MS/MS 1 1 1.1067 1.0004 9.865 2 Median NaN NaN NaN 0 0 Median 1.2597 1.0726 NaN 1 0 Median 0.97228 0.93297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2218300 1078700 1139600 0 0 0 790740 364740 425990 1427600 713940 713620 0 0 0 0 0 0 0 0 0 13869 4347 14435 70814;70815 71737;71738 71737 2 HVVFGFVK QFVITLKKAEHLDFKHVVFGFVKDGMDTVK AEHLDFKHVVFGFVKDGMDTVKKIESFGSP K H V V K D 0 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 3 0 0 8 0 931.52797 P49792 P49792 3186 3193 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0032511 99.919 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 1 1.0649 1.0821 37.061 9 Median 0.42428 0.42935 NaN 1 0 Median 1.7021 1.5016 28.526 3 0 Median 1.0018 1.0901 1.0354 2 0 Median 1.1391 1.0718 1.6401 2 0 Median 0.9584 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median 67801000 33066000 34735000 2969000 1726200 1242700 9370000 4151100 5218800 49028000 24233000 24794000 5437700 2441900 2995900 996190 513080 483100 0 0 0 13870 2401 14436 70816;70817;70818;70819;70820;70821;70822;70823;70824 71739;71740;71741;71742;71743;71744;71745;71746;71747;71748 71740 10 HVVFGHVK QFFICTIKTDWLDGKHVVFGHVKEGMDVVK TDWLDGKHVVFGHVKEGMDVVKKIESFGSK K H V V K E 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 3 0 0 8 0 921.51847 P30405 P30405 168 175 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 2 0.0033017 99.384 By matching By MS/MS By MS/MS 2 1 1 1.2039 1.124 7.7117 4 Median 1.2039 1.1511 10.526 2 0 Median NaN NaN NaN 0 0 Median 1.1309 1.0599 NaN 1 0 Median 1.4302 1.1823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14872000 6883400 7988200 1371300 611450 759850 0 0 0 12153000 5747500 6406000 1346800 524450 822340 0 0 0 0 0 0 13871 2192 14437 70825;70826;70827;70828 71749;71750;71751;71752 71750 4 HVVFGQVIK QFFITTVPTPHLDGKHVVFGQVIKGIGVAR PHLDGKHVVFGQVIKGIGVARILENVEVKG K H V I K G 0 0 0 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 0 3 0 0 9 0 1025.6022 Q08752 Q08752 146 154 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 2 0.00027622 113.7 By MS/MS By MS/MS By MS/MS 1 1 1 1.2139 1.2442 17.889 3 Median 1.3468 1.2442 NaN 1 1 Median 1.0753 0.91608 NaN 1 0 Median 1.2139 1.2533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60423000 30932000 29491000 17580000 9237200 8342700 20875000 11555000 9320400 21968000 10140000 11828000 0 0 0 0 0 0 0 0 0 13872 2742 14438 70829;70830;70831 71753;71754;71755 71753 3 HVVFIAQR QVRLVRELEKKFSGKHVVFIAQRRILPKPT EKKFSGKHVVFIAQRRILPKPTRKSRTKNK K H V Q R R 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 968.55558 P62081;A0A2R8Y623;B5MCP9 P62081 91 98 RPS7 40S ribosomal protein S7 yes no 2 0.0023995 134.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 5 1.2955 1.1106 12.51 17 Median 1.117 1.0935 2.2006 2 0 Median 1.2745 1.0567 7.8223 3 1 Median 1.4304 1.412 19.324 2 0 Median 1.2987 1.0835 13.544 3 0 Median 1.2417 1.2845 9.2078 2 0 Median 1.3532 1.0994 11.023 5 0 Median 555760000 243250000 312510000 198010000 89876000 108140000 86921000 37925000 48996000 172010000 72645000 99363000 28532000 12124000 16407000 41232000 18090000 23142000 29053000 12593000 16459000 13873 2568 14439 70832;70833;70834;70835;70836;70837;70838;70839;70840;70841;70842;70843;70844;70845;70846;70847;70848 71756;71757;71758;71759;71760;71761;71762;71763;71764;71765;71766;71767;71768;71769;71770;71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787;71788;71789 71783 34 HVVFSGSGR LLGLALGRLEGGSARHVVFSGSGRAAGKAV EGGSARHVVFSGSGRAAGKAVSCAEIVKRR R H V G R A 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 2 0 0 9 0 944.48281 Q8N5L8 Q8N5L8 54 62 RPP25L Ribonuclease P protein subunit p25-like protein yes yes 2 0.04318 32.841 By matching By MS/MS By matching 1 1 1 1.2328 1.1229 5.9846 3 Median 1.2328 1.2132 NaN 1 0 Median 1.2896 1.0784 NaN 1 0 Median 1.2023 1.1229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1507100 673560 833550 269990 109140 160850 610330 273940 336390 626780 290470 336310 0 0 0 0 0 0 0 0 0 13874 3380 14440 70849;70850;70851 71790;71791 71791 2 HVVFYPTLK ASEHFFEYKKSRSGRHVVFYPTLKSLQVRL KSRSGRHVVFYPTLKSLQVRLELARELGVG R H V L K S 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 1 2 0 0 9 0 1102.6175 Q9BWS9;H0YDL6;H0YCC4;H0YC89 Q9BWS9 353 361 CHID1 Chitinase domain-containing protein 1 yes no 2 0.00067245 105.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.2107 1.0336 13.077 6 Median 0.92833 0.85538 NaN 1 0 Median 1.1693 0.99669 NaN 1 0 Median 1.0985 1.0947 15.907 2 0 Median 1.2537 1.0719 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4045 1.171 NaN 1 0 Median 119510000 58286000 61223000 28087000 14491000 13596000 9332600 4149300 5183300 59130000 29691000 29440000 21526000 9391000 12135000 0 0 0 1433200 564000 869250 13875 3874 14441 70852;70853;70854;70855;70856;70857 71792;71793;71794;71795;71796;71797;71798 71792 7 HVVLGAIENK ADELRRHLELKEKGRHVVLGAIENKVESKG KEKGRHVVLGAIENKVESKGNSPPSSGEAC R H V N K V 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1078.6135 P41227 P41227 170 179 NAA10 N-alpha-acetyltransferase 10 yes yes 2 5.3706E-06 155.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1534 1.0184 12.651 6 Median 1.1633 1.0973 NaN 1 0 Median 1.2707 1.067 NaN 1 0 Median 0.97535 0.93277 23.646 2 0 Median 1.151 0.96716 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1558 0.97197 NaN 1 0 Median 27908000 12746000 15162000 6213600 2793700 3419900 6114800 2773100 3341700 8805200 4137100 4668200 5793800 2560300 3233500 0 0 0 980300 481480 498830 13876 2298 14442 70858;70859;70860;70861;70862;70863 71799;71800;71801;71802;71803;71804;71805;71806;71807;71808 71804 10 HVVLGAIENKVESK ADELRRHLELKEKGRHVVLGAIENKVESKG RHVVLGAIENKVESKGNSPPSSGEACREEK R H V S K G 1 0 1 0 0 0 2 1 1 1 1 2 0 0 0 1 0 0 0 3 0 0 14 1 1521.8515 P41227 P41227 170 183 NAA10 N-alpha-acetyltransferase 10 yes yes 2;3 4.3382E-09 160.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1 1.2514 1.1492 13.112 9 Median 1.2773 1.2988 14.998 3 0 Median 1.2477 1.1303 2.3395 2 0 Median 1.2514 1.2471 NaN 1 0 Median 1.2344 1.0981 9.0567 2 0 Median NaN NaN NaN 0 0 Median 1.1437 0.99259 NaN 1 0 Median 127110000 51325000 75783000 40738000 15823000 24915000 37259000 14923000 22336000 8983300 3609300 5374000 38922000 16540000 22382000 0 0 0 1205500 429370 776150 13877 2298 14443 70864;70865;70866;70867;70868;70869;70870;70871;70872;70873;70874 71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822 71810 13 HVVLGSLPGK LVLQQPQSGGPQGHRHVVLGSLPGKIVLQG PQGHRHVVLGSLPGKIVLQGNQLAALTQAK R H V G K I 0 0 0 0 0 0 0 2 1 0 2 1 0 0 1 1 0 0 0 2 0 0 10 0 1005.5971 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4;G3V2T9 Q9HCK8 304 313 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 0.010957 43.246 By MS/MS 2 0.96461 0.89334 8.0139 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96461 0.89334 8.0139 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1880400 966080 914350 0 0 0 0 0 0 0 0 0 1880400 966080 914350 0 0 0 0 0 0 13878 4030 14444 70875;70876 71823 71823 1 HVVLYPLVAK TMREGEIAQFLCDIKHVVLYPLVAKSLRNI LCDIKHVVLYPLVAKSLRNIAVGKDPLEGQ K H V A K S 1 0 0 0 0 0 0 0 1 0 2 1 0 0 1 0 0 0 1 3 0 0 10 0 1137.691 O00170 O00170 94 103 AIP AH receptor-interacting protein yes yes 2 0.00059056 94.006 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.95358 0.84252 19.608 6 Median 0.88033 0.81715 5.583 2 0 Median 0.88866 0.75961 26.314 2 0 Median NaN NaN NaN 0 0 Median 1.3708 1.1497 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99925 0.83505 NaN 1 0 Median 25467000 13334000 12134000 17858000 9575600 8282200 6307600 3132200 3175400 0 0 0 707020 341080 365940 0 0 0 594910 284810 310100 13879 1445 14445 70877;70878;70879;70880;70881;70882 71824;71825;71826;71827 71824 4 HVVPLPDGK REKEVKRYLWQHLKKHVVPLPDGKSTDFLP WQHLKKHVVPLPDGKSTDFLPVDCPVRSKL K H V G K S 0 0 0 1 0 0 0 1 1 0 1 1 0 0 2 0 0 0 0 2 0 0 9 0 960.53927 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 646 654 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.050239 47.849 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13880 189 14446 70883 71828 71828 1 HVVPNEVVVQR SGLKYKKGGVASGFKHVVPNEVVVQRLFQV SGFKHVVPNEVVVQRLFQVKGRRVVRATEV K H V Q R L 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 5 0 0 11 0 1274.7095 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14;A0A0U1RQL8;Q5T0I0 A0A0A0MS51 144 154 GSN Gelsolin yes no 2;3 5.3666E-05 74.944 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.0154 0.88683 13.708 7 Median 0.83792 0.79791 9.3474 2 0 Median 1.0592 0.91784 5.9691 2 0 Median 0.83337 0.88683 NaN 1 0 Median 1.1978 1.0244 19.293 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21256000 10871000 10385000 12567000 6608100 5958600 6381100 3150900 3230300 918850 461310 457540 1389300 650420 738930 0 0 0 0 0 0 + 13881 176 14447 70884;70885;70886;70887;70888;70889;70890 71829;71830;71831;71832;71833;71834;71835;71836;71837;71838;71839;71840;71841 71836 13 HVVQIVEK ILITKAAIKAIKLYKHVVQIVEKFIKKCKP KAIKLYKHVVQIVEKFIKKCKPEYKVPGLY K H V E K F 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 950.55492 O95104 O95104 42 49 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 2 0.0079875 64.757 By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1.1251 1.0339 4.4451 6 Median NaN NaN NaN 0 0 Median 1.2039 1.0365 NaN 1 0 Median 0.9899 1.058 NaN 1 0 Median 1.1251 0.98216 7.1821 2 0 Median 0.99183 1.0345 NaN 1 0 Median 1.1944 1.0286 NaN 1 0 Median 4331200 2117800 2213400 0 0 0 738390 312380 426010 1389100 698020 691040 769130 405580 363550 914580 451530 463050 520070 250280 269790 13882 1745 14448 70891;70892;70893;70894;70895;70896 71842 71842 1 HVVQPGYPAHR QQLGCAVIDVDVMARHVVQPGYPAHRRIVE VMARHVVQPGYPAHRRIVEVFGTEVLLENG R H V H R R 1 1 0 0 0 1 0 1 2 0 0 0 0 0 2 0 0 0 1 2 0 0 11 0 1259.6523 K7ESP4;Q8WVC6 K7ESP4 37 47 DCAKD Dephospho-CoA kinase domain-containing protein yes no 3 0.025985 22.686 By MS/MS By MS/MS By matching 1 1 1 0.69668 0.65274 17 3 Median 0.69668 0.65274 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57792 0.53949 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78592 0.7573 NaN 1 0 Median NaN NaN NaN 0 0 Median 1125100 625550 499510 593630 314790 278830 0 0 0 390550 236380 154170 0 0 0 140890 74380 66507 0 0 0 13883 1402 14449 70897;70898;70899 71843;71844;71845 71843 3 HVVQSISTQQEKETIAK MRRKEQEHMINWVEKHVVQSISTQQEKETI VQSISTQQEKETIAKCIADLKLLAKKAQAQ K H V A K C 1 0 0 0 0 3 2 0 1 2 0 2 0 0 0 2 2 0 0 2 0 0 17 1 1925.0218 Q5QNZ2;P24539 Q5QNZ2 161 177 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2;3 9.5709E-06 66.262 By MS/MS By MS/MS 1 2 1.0825 1.0403 19.416 2 Median 0.8944 0.90684 NaN 1 0 Median 1.3101 1.1934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85674000 48071000 37602000 58198000 34678000 23520000 27476000 13394000 14082000 0 0 0 0 0 0 0 0 0 0 0 0 13884 2124 14450 70900;70901;70902 71846;71847;71848;71849 71847 4 HVYEIAR ARQTGKEVAGLVTLKHVYEIARIKAQDEAF VAGLVTLKHVYEIARIKAQDEAFALQDVPL K H V A R I 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 886.4661 Q9Y3B7 Q9Y3B7 116 122 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.028199 50.966 By MS/MS By MS/MS By MS/MS 1 1 1 1.2478 1.1412 3.7059 3 Median 1.2478 1.1751 NaN 1 0 Median 1.3698 1.1412 NaN 1 0 Median 1.1596 1.0917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4414000 1894500 2519500 1559100 688200 870860 895350 326450 568900 1959600 879880 1079700 0 0 0 0 0 0 0 0 0 13885 4416 14451 70903;70904;70905 71850;71851;71852;71853 71851 4 HWDHLTQVK QNLSFQDCYSSKFLKHWDHLTQVKKPVIAA SSKFLKHWDHLTQVKKPVIAAVNGYAFGGG K H W V K K 0 0 0 1 0 1 0 0 2 0 1 1 0 0 0 0 1 1 0 1 0 0 9 0 1162.5883 P30084 P30084 119 127 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.0012806 83.265 By MS/MS By matching By matching 1 1 1 1.1257 0.99068 4.8025 3 Plateau 1.1257 1.0462 NaN 1 0 Median 1.1242 0.95064 NaN 1 0 Median 1.0282 0.99068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9402500 4347200 5055300 5005800 2658300 2347500 2663200 991550 1671700 1733500 697310 1036200 0 0 0 0 0 0 0 0 0 13886 2186 14452 70906;70907;70908 71854;71855 71854 2 HWDQDDDFEFTGSHLTVR LEFANATPLSTLSLKHWDQDDDFEFTGSHL QDDDFEFTGSHLTVRNGYSCVPVALAEGLD K H W V R N 0 1 0 4 0 1 1 1 2 0 1 0 0 2 0 1 2 1 0 1 0 0 18 0 2203.9559 O60341;R4GMQ1 O60341 551 568 KDM1A Lysine-specific histone demethylase 1A yes no 3 2.9309E-12 108.49 By MS/MS 1 0.86587 0.9197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86587 0.9197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9781700 5073500 4708300 0 0 0 0 0 0 9781700 5073500 4708300 0 0 0 0 0 0 0 0 0 13887 1613 14453 70909 71856;71857 71857 2 HWELTAEGEEIAR QALGEVIEAELRSTKHWELTAEGEEIAREG TKHWELTAEGEEIAREGSHEARVFRSIPPE K H W A R E 2 1 0 0 0 0 4 1 1 1 1 0 0 0 0 0 1 1 0 0 0 0 13 0 1539.7318 Q9Y285;K7ER00;K7ER16;K7EK06 Q9Y285 60 72 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 4.8234E-07 107.83 By MS/MS By matching By matching 1 1 1 1.1198 0.96843 18.031 3 Median 0.85707 0.82087 NaN 1 0 Median 1.3078 1.1768 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1198 0.96843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9596400 5422200 4174200 8171800 4873500 3298300 518230 178200 340030 0 0 0 906390 370480 535920 0 0 0 0 0 0 13888 4379 14454 70910;70911;70912 71858 71858 1 HWFTMER FKFILANRLYPVSARHWFTMERLEVHSNGS RLYPVSARHWFTMERLEVHSNGSVAYFNAS R H W E R L 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 7 0 1005.4491 Q15904;A0A0C4DGX8;A6NLC6 Q15904 338 344 ATP6AP1 V-type proton ATPase subunit S1 yes no 2 0.047302 41.502 By MS/MS 3 1.4784 1.2512 9.9781 3 Plateau NaN NaN NaN 0 0 Median 1.4784 1.2512 9.9781 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10170000 4260600 5909100 0 0 0 10170000 4260600 5909100 0 0 0 0 0 0 0 0 0 0 0 0 13889 257 14455 70913;70914;70915 71859;71860 71859 2 HWGGNVLGPK AIRTNYNDRYDEIRRHWGGNVLGPKSVARI DEIRRHWGGNVLGPKSVARIAKLEKAKAKE R H W P K S 0 0 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 1 0 1 0 0 10 0 1063.5563 P62424;Q5T8U2 P62424 236 245 RPL7A 60S ribosomal protein L7a yes no 2 0.00034304 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 3 1 0.95577 0.90641 6.8851 10 Median 0.92769 0.83754 6.6674 3 0 Plateau 1.07 0.88729 8.705 2 0 Median 0.95746 0.92161 NaN 1 0 Median 1.1046 0.92135 NaN 1 0 Median 0.90102 0.94433 4.857 2 0 Median 1.0028 0.8291 NaN 1 0 Median 416220000 196300000 219920000 195830000 99795000 96034000 114920000 54435000 60482000 13052000 6635800 6416100 31599000 14538000 17061000 54855000 18201000 36654000 5966200 2690700 3275400 13890 2589 14456 70916;70917;70918;70919;70920;70921;70922;70923;70924;70925;70926 71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878;71879;71880;71881 71863 21 HWGGNVLGPKSVAR AIRTNYNDRYDEIRRHWGGNVLGPKSVARI RHWGGNVLGPKSVARIAKLEKAKAKELATK R H W A R I 1 1 1 0 0 0 0 3 1 0 1 1 0 0 1 1 0 1 0 2 0 0 14 1 1476.795 P62424;Q5T8U2 P62424 236 249 RPL7A 60S ribosomal protein L7a yes no 3 0.00022009 63.76 By MS/MS 1 1.203 1.1004 NaN 1 Median NaN NaN NaN 0 0 Median 1.203 1.1004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1063700 351900 711770 0 0 0 1063700 351900 711770 0 0 0 0 0 0 0 0 0 0 0 0 13891 2589 14457 70927 71882 71882 1 HWGGQADFR EVRDSALEFLTQLSRHWGGQADFRCALLAS LTQLSRHWGGQADFRCALLASEVPQLALQL R H W F R C 1 1 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 9 0 1072.4839 Q6PJG6 Q6PJG6 530 538 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.014496 44.447 By MS/MS 1 1.5995 1.4502 NaN 1 Median NaN NaN NaN 0 0 Median 1.5995 1.4502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 873670 355100 518570 0 0 0 873670 355100 518570 0 0 0 0 0 0 0 0 0 0 0 0 13892 3174 14458 70928 71883 71883 1 HWILPQDYDHAQAEAR RDLNKDGKLDKDEIRHWILPQDYDHAQAEA WILPQDYDHAQAEARHLVYESDKNKDEKLT R H W A R H 3 1 0 2 0 2 1 0 2 1 1 0 0 0 1 0 0 1 1 0 0 0 16 0 1948.918 Q15293 Q15293 271 286 RCN1 Reticulocalbin-1 yes yes 3 2.3272E-08 97.836 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0978 0.95741 25.146 5 Median 0.90053 0.90079 NaN 1 0 Median 1.0978 0.95741 NaN 1 0 Median 0.85818 0.94103 NaN 1 0 Median 1.281 1.1125 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8851 1.6618 NaN 1 0 Median 80361000 38407000 41954000 24718000 12818000 11900000 13374000 6252500 7121900 39466000 18202000 21264000 2465800 1051900 1413900 0 0 0 336980 83563 253420 13893 2940 14459 70929;70930;70931;70932;70933 71884;71885;71886;71887;71888;71889 71886 6 HWPFMVVNDAGRPK IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV KHWPFMVVNDAGRPKVQVEYKGETKSFYPE K H W P K V 1 1 1 1 0 0 0 1 1 0 0 1 1 1 2 0 0 1 0 2 0 0 14 1 1652.8246 P11142;E9PKE3;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 89 102 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3;4 1.5096E-08 115.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 6 4 2 2 2 0.86339 0.90784 34.243 19 Median 0.84433 0.84568 37.246 5 1 Median 0.91122 0.86948 28.028 4 0 Median 0.81404 0.86721 38.87 4 0 Median 0.95332 0.8741 6.1989 2 0 Median 0.87151 0.95871 16.507 2 0 Median 1.5174 1.3767 42.796 2 0 Median 337390000 180570000 156820000 86908000 46531000 40377000 29637000 14352000 15286000 170980000 93435000 77541000 19819000 10274000 9544300 28948000 15354000 13594000 1104300 622210 482110 13894 1950 14460;14461 70934;70935;70936;70937;70938;70939;70940;70941;70942;70943;70944;70945;70946;70947;70948;70949;70950;70951;70952;70953;70954;70955;70956;70957 71890;71891;71892;71893;71894;71895;71896;71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913;71914;71915;71916;71917;71918;71919;71920;71921;71922;71923;71924;71925;71926;71927;71928 71893 727 38 HWPFQVINDGDKPK IGRKFGDPVVQSDMKHWPFQVINDGDKPKV KHWPFQVINDGDKPKVQVSYKGETKAFYPE K H W P K V 0 0 1 2 0 1 0 1 1 1 0 2 0 1 2 0 0 1 0 1 0 0 14 1 1679.842 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 90 103 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3;4 2.5316E-08 111.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 4 2 2 3 0.9653 0.92433 14.809 19 Median 0.99219 0.92433 4.3493 5 0 Median 0.9392 0.86612 1.7762 4 0 Median 1.1891 1.2644 13.972 3 0 Median 0.96704 0.89292 1.7971 2 0 Median 1.0695 1.169 22.463 2 0 Median 1.0546 0.95202 8.5 3 0 Median 840000000 404710000 435290000 528400000 252610000 275790000 107820000 49994000 57826000 144860000 73570000 71285000 26970000 13239000 13731000 24227000 11528000 12699000 7725000 3766400 3958600 13895 278 14462 70958;70959;70960;70961;70962;70963;70964;70965;70966;70967;70968;70969;70970;70971;70972;70973;70974;70975;70976;70977;70978;70979 71929;71930;71931;71932;71933;71934;71935;71936;71937;71938;71939;71940;71941;71942;71943;71944;71945;71946;71947;71948;71949;71950;71951;71952;71953;71954;71955;71956;71957;71958;71959;71960;71961;71962;71963;71964;71965;71966;71967;71968;71969;71970 71969 42 HWPTFISDIVGASR LNMILVQILKQEWPKHWPTFISDIVGASRT KHWPTFISDIVGASRTSESLCQNNMVILKL K H W S R T 1 1 0 1 0 0 0 1 1 2 0 0 0 1 1 2 1 1 0 1 0 0 14 0 1584.8049 O14980;C9JKM9 O14980 145 158 XPO1 Exportin-1 yes no 2 0.0082641 35.414 By MS/MS 1 1.2623 1.0787 NaN 1 Median NaN NaN NaN 0 0 Median 1.2623 1.0787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2988400 1311800 1676600 0 0 0 2988400 1311800 1676600 0 0 0 0 0 0 0 0 0 0 0 0 13896 1510 14463 70980 71971 71971 1 HWQEITFNLPVK GAGKPPMFGDYEAQRHWQEITFNLPVKQWY AQRHWQEITFNLPVKQWYFNSSDNNLQYWG R H W V K Q 0 0 1 0 0 1 1 0 1 1 1 1 0 1 1 0 1 1 0 1 0 0 12 0 1510.7932 A0A3B3IS62;A0A3B3ITD6;A0A3B3ITI5;S4R350;Q9Y672 A0A3B3IS62 43 54 ALG6 Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase yes no 2 0.0012241 55.567 By MS/MS By matching By matching 1 1 1 0.93048 0.92567 40.652 3 Median 0.93048 0.92567 NaN 1 0 Median 0.91578 0.79389 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9511 1.7116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6002900 3122200 2880700 5343600 2776800 2566900 493860 272250 221610 0 0 0 165380 73184 92197 0 0 0 0 0 0 13897 420 14464 70981;70982;70983 71972 71972 1 HYAHTDCPGHADYVK ITINAAHVEYSTAARHYAHTDCPGHADYVK HYAHTDCPGHADYVKNMITGTAPLDGCILV R H Y V K N 2 0 0 2 1 0 0 1 3 0 0 1 0 0 1 0 1 0 2 1 0 0 15 0 1769.758 P49411 P49411 121 135 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.052698 11.692 By MS/MS 2 1.1192 0.98237 3.5683 2 Median NaN NaN NaN 0 0 Median 1.1192 0.98237 3.5683 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589700 705530 884220 0 0 0 1589700 705530 884220 0 0 0 0 0 0 0 0 0 0 0 0 13898 2382 14465 70984;70985 71973 71973 1 HYAPLQAYLR HFQGNMMDFLAFKKKHYAPLQAYLRQNDLD AFKKKHYAPLQAYLRQNDLDIEEEEEEEEE K H Y L R Q 2 1 0 0 0 1 0 0 1 0 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1230.6509 Q96L91;A0A0A0MR80;A0A0A0MR72 Q96L91 410 419 EP400 E1A-binding protein p400 yes no 2 0.012245 57.177 By MS/MS 2 0.98734 1.0424 2.1755 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98734 1.0424 2.1755 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20400000 10276000 10124000 0 0 0 0 0 0 20400000 10276000 10124000 0 0 0 0 0 0 0 0 0 13899 3700 14466 70986;70987 71974;71975 71975 2 HYASEEIKEK FTTCIELGKSLLARKHYASEEIKEKLLQLT LLARKHYASEEIKEKLLQLTEKRKEMIDKW K H Y E K L 1 0 0 0 0 0 3 0 1 1 0 2 0 0 0 1 0 0 1 0 0 0 10 1 1232.6037 Q01082;A0A087WUZ3 Q01082 1982 1991 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.018492 26.673 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0767 1.0409 9.7912 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84895 0.97862 NaN 1 0 Median 1.0297 0.95813 NaN 1 0 Median 1.1259 1.1748 NaN 1 0 Median 1.2407 1.1072 NaN 1 0 Median 5192000 2688900 2503100 0 0 0 0 0 0 3953900 2136500 1817400 385690 169140 216540 735120 327040 408080 117250 56167 61086 13900 2681 14467 70988;70989;70990;70991 71976;71977 71976 2 HYDDFFER DEEVFYCKVTNEIFRHYDDFFERTILCNSL VTNEIFRHYDDFFERTILCNSLVWSCAVTG R H Y E R T 0 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 8 0 1127.4672 Q9NRL2 Q9NRL2 36 43 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.0044417 81.548 By MS/MS By matching 1 1 1.0572 1.0386 24.411 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1289 1.2342 NaN 1 0 Median 0.99007 0.87391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10329000 5545300 4783900 0 0 0 0 0 0 9508600 5101600 4407100 820620 443740 376870 0 0 0 0 0 0 13901 4084 14468 70992;70993 71978;71979 71978 2 HYDLNQLLEPR LRDVCFHLLKLYSDRHYDLNQLLEPRSITA YSDRHYDLNQLLEPRSITADPLDYRLSWHL R H Y P R S 0 1 1 1 0 1 1 0 1 0 3 0 0 0 1 0 0 0 1 0 0 0 11 0 1396.7099 P52948;H7C3P6;H0YDF4 P52948 1503 1513 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 0.00029532 72.607 By MS/MS By matching 2 1 0.8659 0.92241 75.162 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47264 0.50253 85.891 2 0 Median 1.2547 1.082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19092000 11431000 7661200 0 0 0 0 0 0 18614000 11211000 7403300 478230 220390 257840 0 0 0 0 0 0 13902 2462 14469 70994;70995;70996 71980;71981;71982 71982 3 HYEAVHDAGNDSGHGGESNLALK PQCMKSLGSADELFKHYEAVHDAGNDSGHG GNDSGHGGESNLALKRDDVTLLRQEVQDLQ K H Y L K R 3 0 2 2 0 0 2 4 3 0 2 1 0 0 0 2 0 0 1 1 0 0 23 0 2377.0683 Q15075 Q15075 59 81 EEA1 Early endosome antigen 1 yes yes 4 1.144E-05 37.884 By matching By MS/MS 1 1 1.091 1.003 7.0771 2 Median 1.0022 0.954 NaN 1 0 Median 1.1876 1.0544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5385400 2333900 3051400 2638000 1056800 1581100 2747400 1277100 1470300 0 0 0 0 0 0 0 0 0 0 0 0 13903 2926 14470 70997;70998 71983;71984 71984 2 HYEAVHDAGNDSGHGGESNLALKR PQCMKSLGSADELFKHYEAVHDAGNDSGHG NDSGHGGESNLALKRDDVTLLRQEVQDLQA K H Y K R D 3 1 2 2 0 0 2 4 3 0 2 1 0 0 0 2 0 0 1 1 0 0 24 1 2533.1694 Q15075 Q15075 59 82 EEA1 Early endosome antigen 1 yes yes 5 0.0035041 22.996 By MS/MS By matching 1 1 1.0449 1.0321 13.607 2 Median 0.92194 0.93739 NaN 1 0 Median 1.1842 1.1363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3913500 2127700 1785800 2859900 1617600 1242300 1053600 510030 543530 0 0 0 0 0 0 0 0 0 0 0 0 13904 2926 14471 70999;71000 71985;71986 71986 2 HYEDFPK DNIRAAQDLCEEALRHYEDFPKLWMMKGQI DLCEEALRHYEDFPKLWMMKGQIEEQKEMM R H Y P K L 0 0 0 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 7 0 934.41848 O94906 O94906 704 710 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.027601 51.688 By matching By matching By MS/MS By matching 1 1 1 2 1.0455 0.87231 11.066 5 Median NaN NaN NaN 0 0 Median 1.0468 0.90846 NaN 1 0 Median 0.70211 0.73566 NaN 1 0 Median 1.062 0.89326 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94225 0.79452 13.209 2 0 Median 7343400 3810500 3532900 0 0 0 3178900 1599700 1579200 1545400 925760 619650 1481700 705580 776110 0 0 0 1137300 579390 557950 13905 1735 14472 71001;71002;71003;71004;71005 71987 71987 1 HYEDGYPGGSDNYGSLSR TLPRNFHYPPDGYSRHYEDGYPGGSDNYGS DGYPGGSDNYGSLSRVTRIEERYRPSMEGY R H Y S R V 0 1 1 2 0 0 1 4 1 0 1 0 0 0 1 3 0 0 3 0 0 0 18 0 1972.8187 C9JZR2;O60716;E9PRE2 C9JZR2 216 233 CTNND1 Catenin delta-1 yes no 3 1.7178E-14 117.18 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 0.93758 0.80784 17.862 7 Median 0.85222 0.83438 37.176 2 0 Median 0.86093 0.75639 18.859 2 0 Median 0.70309 0.7459 NaN 1 0 Median 0.96365 0.82619 3.1753 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24814000 12863000 11951000 6093100 2834300 3258800 2575600 1266100 1309500 13150000 7437300 5713000 2995100 1325000 1670100 0 0 0 0 0 0 13906 732 14473 71006;71007;71008;71009;71010;71011;71012 71988;71989;71990;71991 71990 4 HYEELQAR SRTPEVQSRVPTLERHYEELQARAGERARA RVPTLERHYEELQARAGERARALEAALALY R H Y A R A 1 1 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1044.4989 O15020 O15020 833 840 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.039331 37.021 By MS/MS By MS/MS 1 1 1.0719 1.0611 28.896 2 Median NaN NaN NaN 0 0 Median 1.477 1.3016 NaN 1 0 Median 0.77794 0.86498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646700 801960 844740 0 0 0 493170 166410 326750 1153500 635550 517990 0 0 0 0 0 0 0 0 0 13907 1512 14474 71013;71014 71992;71993;71994 71992 3 HYEMLANR DIEKDNARFMKKATKHYEMLANRTAANGHC FMKKATKHYEMLANRTAANGHCIDIYACAL K H Y N R T 1 1 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1032.4811 A0A2R8YFH5;Q15437 A0A2R8YFH5 314 321 SEC23B Protein transport protein Sec23B yes no 2 0.0024483 120.65 By MS/MS 1 1.0808 0.93576 NaN 1 Median NaN NaN NaN 0 0 Median 1.0808 0.93576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4864900 2211500 2653500 0 0 0 4864900 2211500 2653500 0 0 0 0 0 0 0 0 0 0 0 0 13908 401 14475 71015 71995 71995 1 HYEMQQQQFQHLYQEWER PPPHIQTMSVDMQLRHYEMQQQQFQHLYQE MQQQQFQHLYQEWEREFQLWEEQLHSYPHK R H Y E R E 0 1 0 0 0 6 3 0 2 0 1 0 1 1 0 0 0 1 2 0 0 0 18 0 2507.1077 P49750;F8VU51 P49750 440 457 YLPM1 YLP motif-containing protein 1 yes no 3 1.5072E-06 74.786 By MS/MS By matching 2 1 0.98445 1.0709 5.1183 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95785 1.0511 2.6373 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2491 1.1415 NaN 1 0 Median 5490900 2909700 2581200 0 0 0 0 0 0 5340500 2865400 2475200 0 0 0 0 0 0 150360 44283 106080 13909 2395 14476 71016;71017;71018 71996 71996 1 HYEVEILDAK ______________________________ ______________________________ K H Y A K T 1 0 0 1 0 0 2 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1215.6136 Q9NZ01;M0R3C3 Q9NZ01 3 12 TECR Very-long-chain enoyl-CoA reductase yes no 2 2.8456E-10 171.56 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.1361 1.0435 11.329 7 Median 0.99181 0.97542 2.7252 2 1 Median 1.1835 1.0554 1.5993 2 0 Median 1.1444 1.2448 2.5047 2 1 Median NaN NaN NaN 0 0 Median 0.8902 0.95831 NaN 1 0 Median NaN NaN NaN 0 0 Median 143170000 67296000 75877000 29682000 14839000 14843000 96432000 44037000 52395000 8999200 4595900 4403200 0 0 0 8058900 3823100 4235800 0 0 0 13910 4181 14477 71019;71020;71021;71022;71023;71024;71025 71997;71998;71999;72000;72001;72002;72003;72004 71997 8 HYFIEVNSR ENAGTVEFLVDRHGKHYFIEVNSRLQVEHT VDRHGKHYFIEVNSRLQVEHTVTEEITDVD K H Y S R L 0 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 9 0 1163.5724 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 320 328 PC Pyruvate carboxylase, mitochondrial yes no 2 0.0043669 60.91 By MS/MS By MS/MS 1 1 1.2182 1.0197 NaN 1 Median NaN NaN NaN 0 0 Median 1.2182 1.0197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9648900 4662500 4986400 0 0 0 9648900 4662500 4986400 0 0 0 0 0 0 0 0 0 0 0 0 13911 1967 14478 71026;71027 72005;72006;72007 72007 3 HYFQNTQGLIFVVDSNDRER VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS TQGLIFVVDSNDRERVNEAREELMRMLAED R H Y E R V 0 2 2 2 0 2 1 1 1 1 1 0 0 2 0 1 1 0 1 2 0 0 20 1 2437.1775 P18085;C9JPM4;C9JAK5;P84077;P61204;F5H423;F5H0C7;P84085;C9J1Z8 P84077 80 99 ARF4;ARF1;ARF3;ARF5 ADP-ribosylation factor 4;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 no no 3 0.0006204 28.083 By MS/MS By matching 1 1 1.8762 1.83 90.432 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0865 3.4686 NaN 1 0 Median 1.1406 0.96548 NaN 1 0 Median 14059000 4286700 9772100 0 0 0 0 0 0 0 0 0 0 0 0 8448100 1871900 6576300 5610700 2414800 3195800 13912 2549;2665;2055 14479 71028;71029 72008;72009 72009 2 HYGFQLYQSDPSGNYGGWK KRPFGVSLLYIGWDKHYGFQLYQSDPSGNY QLYQSDPSGNYGGWKATCIGNNSAAAVSML K H Y W K A 0 0 1 1 0 2 0 4 1 0 1 1 0 1 1 2 0 1 3 0 0 0 19 0 2202.9759 P25789;H0YMZ1;H0YN18;H0YL69;H0YMI6;H0YMA1;H0YKT8;H0YKS0;H0YLC2;H0YMV3 P25789 142 160 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type yes no 3 2.6673E-10 93.181 By MS/MS By MS/MS 2 2 0.96987 0.88667 4.0676 4 Median 0.96203 0.88667 0.86388 2 0 Median 1.027 0.87497 6.8649 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23987000 12352000 11634000 22574000 11694000 10880000 1412100 658180 753920 0 0 0 0 0 0 0 0 0 0 0 0 13913 2138 14480 71030;71031;71032;71033 72010;72011;72012;72013;72014 72011 5 HYGGLTGLNK QMWLPVVRTWRLNERHYGGLTGLNKAETAA RLNERHYGGLTGLNKAETAAKHGEAQVKIW R H Y N K A 0 0 1 0 0 0 0 3 1 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1058.5509 P18669;P15259;Q8N0Y7 P18669 91 100 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 2 4.6608E-07 160.63 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.23 1.0315 11.193 8 Median 1.2481 1.1428 8.6174 3 0 Median 1.2538 1.0414 3.2044 3 0 Plateau 1.2517 1.1738 NaN 1 0 Median 1.0382 0.86018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96352000 43396000 52957000 19572000 8711000 10861000 44296000 20106000 24190000 28725000 12851000 15874000 3759300 1727700 2031600 0 0 0 0 0 0 13914 2060 14481 71034;71035;71036;71037;71038;71039;71040;71041 72015;72016;72017;72018;72019;72020;72021;72022;72023;72024 72019 10 HYGGLTGLNKAETAAK QMWLPVVRTWRLNERHYGGLTGLNKAETAA YGGLTGLNKAETAAKHGEAQVKIWRRSYDV R H Y A K H 3 0 1 0 0 0 1 3 1 0 2 2 0 0 0 0 2 0 1 0 0 0 16 1 1629.8475 P18669;P15259;Q8N0Y7 P18669 91 106 PGAM1;PGAM2;PGAM4 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4 yes no 2;3 1.6687E-20 189.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1.1972 1.1905 43.738 9 Median 1.1914 1.2103 60.107 4 0 Median 1.2036 1.0942 17.796 3 0 Median NaN NaN NaN 0 0 Median 1.1891 1.0707 NaN 1 0 Median 1.45 1.5389 NaN 1 0 Median NaN NaN NaN 0 0 Median 210280000 93086000 117200000 114010000 50869000 63136000 89947000 39337000 50610000 0 0 0 3661800 1749100 1912600 2667200 1131500 1535800 0 0 0 13915 2060 14482 71042;71043;71044;71045;71046;71047;71048;71049;71050 72025;72026;72027;72028;72029;72030;72031;72032;72033;72034;72035;72036;72037;72038;72039;72040 72035 16 HYGNKPIGMGGTFIIQK GPLNFVTCMRETLEKHYGNKPIGMGGTFII GNKPIGMGGTFIIQKGKVKSHIMPAEFSSC K H Y Q K G 0 0 1 0 0 1 0 4 1 3 0 2 1 1 1 0 1 0 1 0 0 0 17 1 1859.9716 A0A1W2PRB8;E9PPB5;E9PJU8;E9PQS1;A0A087WT99;Q9H0W9 A0A1W2PRB8 162 178 C11orf54 Ester hydrolase C11orf54 yes no 3 0.0012929 32.341 By MS/MS 1 0.70713 0.68709 NaN 1 Median 0.70713 0.68709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13054000 7595900 5457900 13054000 7595900 5457900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13916 346 14483 71051 72041;72042 72041 2 HYGPGWVSMANAGK SIYGERFPDENFKLKHYGPGWVSMANAGKD KHYGPGWVSMANAGKDTNGSQFFITTVKTA K H Y G K D 2 0 1 0 0 0 0 3 1 0 0 1 1 0 1 1 0 1 1 1 0 0 14 0 1473.6823 P23284 P23284 132 145 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 3.1563E-82 254.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 5 4 6 7 1.0892 0.98528 24.842 36 Median 0.89573 0.83332 11.265 7 0 Median 1.2258 1.0557 7.4916 7 1 Median 0.93258 0.87502 40.578 5 2 Median 1.2239 1.0164 34.054 4 0 Median 1.0616 1.1378 27.463 6 1 Median 1.2468 1.0089 8.587 7 0 Median 651630000 323690000 327940000 231080000 119930000 111150000 33077000 15173000 17904000 224810000 113910000 110910000 124720000 56734000 67985000 21320000 10547000 10773000 16616000 7404200 9211600 13917 2109 14484;14485 71052;71053;71054;71055;71056;71057;71058;71059;71060;71061;71062;71063;71064;71065;71066;71067;71068;71069;71070;71071;71072;71073;71074;71075;71076;71077;71078;71079;71080;71081;71082;71083;71084;71085;71086;71087 72043;72044;72045;72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058;72059;72060;72061;72062;72063;72064;72065;72066;72067;72068;72069;72070;72071;72072;72073;72074;72075;72076;72077;72078;72079;72080 72077 878 38 HYGYSLYSAIK RSEIDLLDIRTEFKKHYGYSLYSAIKSDTS EFKKHYGYSLYSAIKSDTSGDYEITLLKIC K H Y I K S 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 2 0 0 3 0 0 0 11 0 1300.6452 P12429;D6RA82 P12429 294 304 ANXA3 Annexin A3;Annexin yes no 2 0.0016318 57.96 By MS/MS By MS/MS By matching 1 1 1 1.6075 1.4586 33.324 3 Median 1.6075 1.4586 NaN 1 0 Median 1.2478 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3799 2.0421 NaN 1 0 Median 43193000 15314000 27879000 31155000 10393000 20761000 11085000 4503600 6581700 0 0 0 0 0 0 0 0 0 953240 417340 535900 13918 1981 14486 71088;71089;71090 72081;72082 72082 2 HYIFNPR LISKSNAGKINYVFRHYIFNPRKEPVYLSG GKINYVFRHYIFNPRKEPVYLSGYGVELAI R H Y P R K 0 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 7 0 945.48209 Q9NYU2 Q9NYU2 229 235 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.044966 85.306 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13919 4179 14487 71091;71092 72083;72084 72083 2 HYLDFINHYANLFHEK RLAKRGGRTMAITPRHYLDFINHYANLFHE YLDFINHYANLFHEKRSELEEQQMHLNVGL R H Y E K R 1 0 2 1 0 0 1 0 3 1 2 1 0 2 0 0 0 0 2 0 0 0 16 0 2059.9904 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3175 3190 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 1.1799E-05 80.534 By MS/MS 1 1.1878 1.0572 NaN 1 Median NaN NaN NaN 0 0 Median 1.1878 1.0572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17372000 7952800 9419000 0 0 0 17372000 7952800 9419000 0 0 0 0 0 0 0 0 0 0 0 0 13920 2865 14488 71093 72085;72086 72086 2 HYLFDVQR AIDTEKSQQALVQKRHYLFDVQRNNIAMAL QALVQKRHYLFDVQRNNIAMALEVTYRERL R H Y Q R N 0 1 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1076.5403 Q5QNZ2;P24539 Q5QNZ2 103 110 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2 0.0023931 127.84 By MS/MS By MS/MS 1 3 1.0253 0.91378 28.024 4 Median 1.1037 1.0504 NaN 1 0 Median 0.95248 0.79491 32.133 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99004000 45517000 53487000 75954000 36188000 39766000 23051000 9329500 13721000 0 0 0 0 0 0 0 0 0 0 0 0 13921 2124 14489 71094;71095;71096;71097 72087;72088;72089;72090 72089 4 HYLFYDGESVSGK RKMAEMKTEDGKVEKHYLFYDGESVSGKVN EKHYLFYDGESVSGKVNLAFKQPGKRLEHQ K H Y G K V 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 2 0 0 2 1 0 0 13 0 1500.6885 O75436;S4R3Q6;S4R2Y3 O75436 39 51 VPS26A Vacuolar protein sorting-associated protein 26A yes no 3 9.2768E-05 76.326 By MS/MS By matching 1 1 1.1186 1.0124 2.3257 2 Median 1.0676 0.99586 NaN 1 0 Median 1.172 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8458300 3519200 4939100 8131300 3344300 4787000 326960 174840 152120 0 0 0 0 0 0 0 0 0 0 0 0 13922 1671 14490 71098;71099 72091 72091 1 HYNEEGSQVYNDAHILEK EGMIEDMKLMFRNARHYNEEGSQVYNDAHI EEGSQVYNDAHILEKLLKEKRKELGPLPDD R H Y E K L 1 0 2 1 0 1 3 1 2 1 1 1 0 0 0 1 0 0 2 1 0 0 18 0 2144.9763 Q86U86;E7EVG2;H0Y5B5 Q86U86 599 616 PBRM1 Protein polybromo-1 yes no 3 1.5701E-15 142.3 By matching By MS/MS By MS/MS By matching 1 3 2 1 0.93137 0.87485 24.848 7 Median NaN NaN NaN 0 0 Median 0.93137 0.8191 NaN 1 0 Median 0.79906 0.87485 15.749 3 0 Plateau 1.3438 1.1804 11.024 2 0 Median 1.2572 1.3 NaN 1 0 Median NaN NaN NaN 0 0 Median 161380000 82309000 79067000 0 0 0 1594900 803610 791290 139600000 72342000 67261000 16021000 6886600 9134700 4157500 2276900 1880600 0 0 0 13923 3273 14491 71100;71101;71102;71103;71104;71105;71106 72092;72093;72094;72095;72096;72097;72098;72099 72093 8 HYNGEAYEDDEHHPR QVELVDFDPNQERRRHYNGEAYEDDEHHPR HYNGEAYEDDEHHPRGGVQCQTS_______ R H Y P R G 1 1 1 2 0 0 3 1 3 0 0 0 0 0 1 0 0 0 2 0 0 0 15 0 1867.751 P31689 P31689 375 389 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 4 0.0010705 36.445 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.92262 0.85492 7.5134 4 Median 0.93678 0.91549 NaN 1 0 Median 0.90233 0.78584 NaN 1 0 Median 0.9129 0.8997 NaN 1 0 Median 0.93245 0.81236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4191100 2236200 1954900 633770 306660 327110 1220200 662670 557490 981480 547970 433510 1355600 718860 636790 0 0 0 0 0 0 13924 2204 14492 71107;71108;71109;71110 72100;72101 72101 2 HYPVFENPK DKSCSDRAMESTESRHYPVFENPKQGKLRT ESTESRHYPVFENPKQGKLRTKVENGEGTI R H Y P K Q 0 0 1 0 0 0 1 0 1 0 0 1 0 1 2 0 0 0 1 1 0 0 9 0 1129.5556 P55265;A0A3B3IRQ9;A0A3B3ISU1 P55265 988 996 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.00077811 98.458 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 0.70539 0.775 23.579 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70539 0.775 NaN 1 0 Median 0.77338 0.7088 28.248 2 0 Median 0.71058 0.71435 36.972 2 0 Median NaN NaN NaN 0 0 Median 21473000 12406000 9066600 0 0 0 0 0 0 3461800 2153600 1308200 1189800 647230 542540 16821000 9605700 7215800 0 0 0 13925 2498 14493 71111;71112;71113;71114;71115;71116;71117 72102;72103;72104;72105;72106;72107;72108;72109;72110 72107 9 HYQEEGQGTEVVQGVLLGLVVEDR KQVQIDGLVVLKIIKHYQEEGQGTEVVQGV EVVQGVLLGLVVEDRLEITNCFPFPQHTED K H Y D R L 0 1 0 1 0 3 4 4 1 0 3 0 0 0 0 0 1 0 1 5 0 0 24 0 2653.3348 B3KS98;O15372;A0A087WZK9;E5RFW7;E5RFH0;E5RGU4 B3KS98 66 89 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 3 0.0013243 26.005 By MS/MS 1 1.4924 1.2753 NaN 1 Median NaN NaN NaN 0 0 Median 1.4924 1.2753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1805600 720380 1085200 0 0 0 1805600 720380 1085200 0 0 0 0 0 0 0 0 0 0 0 0 13926 584 14494 71118 72111;72112 72111 2 HYQFASGAFLHIK EQNLDNDEGLKIAAKHYQFASGAFLHIKET AKHYQFASGAFLHIKETVLSALSREPTVDI K H Y I K E 2 0 0 0 0 1 0 1 2 1 1 1 0 2 0 1 0 0 1 0 0 0 13 0 1517.7779 Q8WUM4;A0A3B3IT07;C9IZF9 Q8WUM4 152 164 PDCD6IP Programmed cell death 6-interacting protein yes no 3 0.052627 23.092 By MS/MS 1 1.9528 2.0193 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9528 2.0193 NaN 1 1 Median NaN NaN NaN 0 0 Median 4381200 1720600 2660500 0 0 0 0 0 0 0 0 0 0 0 0 4381200 1720600 2660500 0 0 0 13927 3493 14495 71119 72113 72113 1 HYQTGQPLPK EYFANDYRVVNQFARHYQTGQPLPKNMVSR NQFARHYQTGQPLPKNMVSRLCESKKVCAA R H Y P K N 0 0 0 0 0 2 0 1 1 0 1 1 0 0 2 0 1 0 1 0 0 0 10 0 1167.6037 Q99797 Q99797 546 555 MIPEP Mitochondrial intermediate peptidase yes yes 2 0.0049654 51.346 By MS/MS 1 1.2978 1.1285 NaN 1 Median NaN NaN NaN 0 0 Median 1.2978 1.1285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1059100 379660 679410 0 0 0 1059100 379660 679410 0 0 0 0 0 0 0 0 0 0 0 0 13928 3769 14496 71120 72114;72115 72114 2 HYTEAIK GNECFQKGDYPQAMKHYTEAIKRNPKDAKL GDYPQAMKHYTEAIKRNPKDAKLYSNRAAC K H Y I K R 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 1 0 0 0 7 0 860.43922 P31948 P31948 382 388 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0097793 83.377 By matching By MS/MS 1 2 1.0285 0.88666 11.203 3 Median 1.0944 1.0599 NaN 1 0 Median 0.98411 0.87432 1.9811 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3306700 1597600 1709200 581990 267660 314330 2724800 1329900 1394800 0 0 0 0 0 0 0 0 0 0 0 0 13929 2212 14497 71121;71122;71123 72116;72117;72118;72119 72116 4 HYTEAIKR GNECFQKGDYPQAMKHYTEAIKRNPKDAKL DYPQAMKHYTEAIKRNPKDAKLYSNRAACY K H Y K R N 1 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 0 1 0 0 0 8 1 1016.5403 P31948 P31948 382 389 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.026321 47.849 By MS/MS By MS/MS 1 1 1.1185 1.0836 17.312 2 Median 1.2047 1.2247 NaN 1 0 Median 1.0385 0.95875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1610300 761700 848630 626870 284520 342350 983450 477170 506280 0 0 0 0 0 0 0 0 0 0 0 0 13930 2212 14498 71124;71125 72120;72121;72122;72123 72121 4 HYTFASGSPDNIK TNHKKSVRAVVLHPRHYTFASGSPDNIKQW PRHYTFASGSPDNIKQWKFPDGSFIQNLSG R H Y I K Q 1 0 1 1 0 0 0 1 1 1 0 1 0 1 1 2 1 0 1 0 0 0 13 0 1435.6732 O43660;H0YAA2 O43660 384 396 PLRG1 Pleiotropic regulator 1 yes no 2 6.2264E-07 105.46 By MS/MS By matching 1 2 0.98783 0.84699 14.947 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82978 0.815 NaN 1 0 Median 1.1217 0.95378 16.792 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18759000 9384000 9375000 0 0 0 0 0 0 8535100 4599200 3935900 10224000 4784800 5439100 0 0 0 0 0 0 13931 1580 14499 71126;71127;71128 72124 72124 1 HYVGHGNAINELK GIIRIINPITMQCIKHYVGHGNAINELKFH IKHYVGHGNAINELKFHPRDPNLLLSVSKD K H Y L K F 1 0 2 0 0 0 1 2 2 1 1 1 0 0 0 0 0 0 1 1 0 0 13 0 1450.7317 E9PJK2;O75530 E9PJK2 185 197 EED Polycomb protein EED yes no 3 0.00038713 53.967 By MS/MS By MS/MS By MS/MS 3 2 1 1.0016 1.0096 58.837 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1612 1.1499 18.592 3 0 Median 0.88547 0.77847 55.975 2 1 Median 0.29866 0.28519 NaN 1 1 Median NaN NaN NaN 0 0 Median 29299000 18337000 10962000 0 0 0 0 0 0 5382200 2595600 2786600 8870400 5165100 3705300 15047000 10576000 4470300 0 0 0 13932 944 14500 71129;71130;71131;71132;71133;71134 72125;72126;72127;72128;72129;72130;72131 72130 7 HYVYGPLPQSFDK MFFIGFTALVIMWQKHYVYGPLPQSFDKEW QKHYVYGPLPQSFDKEWVAKQTKRMLDMKV K H Y D K E 0 0 0 1 0 1 0 1 1 0 1 1 0 1 2 1 0 0 2 1 0 0 13 0 1549.7565 P13073;H3BPG0 P13073 123 135 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 0.0097997 36.334 By MS/MS 1 0.82842 0.68553 NaN 1 Median NaN NaN NaN 0 0 Median 0.82842 0.68553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4540800 2507400 2033400 0 0 0 4540800 2507400 2033400 0 0 0 0 0 0 0 0 0 0 0 0 13933 1988 14501 71135 72132 72132 1 HYVYGPLPQSFDKEWVAK MFFIGFTALVIMWQKHYVYGPLPQSFDKEW YGPLPQSFDKEWVAKQTKRMLDMKVNPIQG K H Y A K Q 1 0 0 1 0 1 1 1 1 0 1 2 0 1 2 1 0 1 2 2 0 0 18 1 2163.0789 P13073;H3BPG0 P13073 123 140 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 3 0.0013852 27.85 By MS/MS 1 0.69621 0.69748 NaN 1 Median 0.69621 0.69748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4600400 2724000 1876400 4600400 2724000 1876400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13934 1988 14502 71136 72133 72133 1 HYVYIIR EVKVLDVQKRRVPNKHYVYIIRVTWSSGST QKRRVPNKHYVYIIRVTWSSGSTEAIYRRY K H Y I R V 0 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 1 0 0 7 0 962.53379 A1X283;G3V144;A0A1B0GUF2 A1X283 24 30 SH3PXD2B SH3 and PX domain-containing protein 2B yes no 2 0.040961 44.611 By MS/MS 1 1.549 1.3197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.549 1.3197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1542000 620000 921960 0 0 0 0 0 0 0 0 0 1542000 620000 921960 0 0 0 0 0 0 13935 494 14503 71137 72134 72134 1 HYWEVTVKR EWAVVLADTAVTSGRHYWEVTVKRSQQFRI AVTSGRHYWEVTVKRSQQFRIGVADVDMSR R H Y K R S 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 1 1 2 0 0 9 1 1216.6353 Q8WW59 Q8WW59 88 96 SPRYD4 SPRY domain-containing protein 4 yes yes 3 0.0051885 65.305 By MS/MS By MS/MS 1 1 2.2371 2.155 67.041 2 Median 1.2752 1.3414 NaN 1 0 Median 3.9245 3.462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4180900 1596300 2584600 3153400 1324400 1829100 1027500 271950 755530 0 0 0 0 0 0 0 0 0 0 0 0 13936 3506 14504 71138;71139 72135;72136 72135 0 HYYFLGR PNPAAQMLVGDSFARHYYFLGRMLGKALYE LVGDSFARHYYFLGRMLGKALYENMLVELP R H Y G R M 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 2 0 0 0 7 0 954.47119 Q15386 Q15386 817 823 UBE3C Ubiquitin-protein ligase E3C yes yes 2 0.044709 42.773 By MS/MS 1 1.2691 1.084 NaN 1 Median NaN NaN NaN 0 0 Median 1.2691 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3046900 1342900 1703900 0 0 0 3046900 1342900 1703900 0 0 0 0 0 0 0 0 0 0 0 0 13937 2944 14505 71140 72137 72137 1 HYYHGFR VVKKSLGQRVLDELKHYYHGFRLLWIDTKI QRVLDELKHYYHGFRLLWIDTKIAARMLWR K H Y F R L 0 1 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 2 0 0 0 7 0 978.44603 O95202 O95202 163 169 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.037411 46.351 By MS/MS 1 1.522 1.3818 NaN 1 Median NaN NaN NaN 0 0 Median 1.522 1.3818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 828920 339180 489730 0 0 0 828920 339180 489730 0 0 0 0 0 0 0 0 0 0 0 0 13938 1754 14506 71141 72138 72138 1 HYYSITINYR LNKPSIQALIHGLNRHYYSITINYRKNELE HGLNRHYYSITINYRKNELEQKMLLNLHKK R H Y Y R K 0 1 1 0 0 0 0 0 1 2 0 0 0 0 0 1 1 0 3 0 0 0 10 0 1328.6513 O00487 O00487 199 208 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2;3 0.00071943 104.06 By MS/MS By MS/MS 2 2 1.2206 1.1406 26.531 4 Median 1.2206 1.1406 8.5565 2 0 Median 1.1191 0.93259 40.412 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67601000 30447000 37154000 44248000 18616000 25632000 23353000 11831000 11522000 0 0 0 0 0 0 0 0 0 0 0 0 13939 1468 14507 71142;71143;71144;71145 72139;72140;72141;72142;72143 72140 5 IAAAGLDVTSPEPLPTNHPLLTLK VVNQDDLYQALASGKIAAAGLDVTSPEPLP SPEPLPTNHPLLTLKNCVILPHIGSATHRT K I A L K N 3 0 1 1 0 0 1 1 1 1 5 1 0 0 4 1 3 0 0 1 0 0 24 0 2467.3686 Q9UBQ7;U3KQ56 Q9UBQ7 263 286 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 3 0.0093319 19.21 By MS/MS By MS/MS By MS/MS 2 1 1 0.5351 0.50736 17.562 4 Median 0.51049 0.47178 4.7341 2 1 Median 0.81206 0.68153 NaN 1 0 Median 0.54865 0.52767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39366000 24633000 14733000 20016000 13504000 6511600 17351000 9934600 7416500 1998800 1194100 804640 0 0 0 0 0 0 0 0 0 13940 4243 14508 71146;71147;71148;71149 72144;72145;72146;72147 72147 4 IAAAILNTPDLR LIRPMYSNPPLNGARIAAAILNTPDLRKQW GARIAAAILNTPDLRKQWLQEVKVMADRII R I A L R K 3 1 1 1 0 0 0 0 0 2 2 0 0 0 1 0 1 0 0 0 0 0 12 0 1266.7296 P00505 P00505 326 337 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 1.5324E-21 195.7 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1.0322 0.98472 21.559 10 Median 0.91631 0.92424 20.714 3 0 Median 1.1825 1.0193 23.791 4 0 Median 0.77413 0.78499 30.413 2 0 Median 1.1672 0.99623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 245390000 120530000 124860000 159640000 80205000 79434000 29643000 13273000 16370000 50875000 24861000 26014000 5233700 2189900 3043800 0 0 0 0 0 0 13941 1823 14509 71150;71151;71152;71153;71154;71155;71156;71157;71158;71159 72148;72149;72150;72151;72152;72153;72154;72155;72156;72157;72158;72159;72160 72149 13 IAAAILNTPDLRK LIRPMYSNPPLNGARIAAAILNTPDLRKQW ARIAAAILNTPDLRKQWLQEVKVMADRIIG R I A R K Q 3 1 1 1 0 0 0 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 13 1 1394.8245 P00505 P00505 326 338 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2;3 3.7563E-22 199.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 2 1 1.0774 1.0934 21.846 16 Median 0.90209 0.96714 18.182 6 0 Median 1.7714 1.5639 31.133 5 1 Plateau 0.94964 1.0809 2.0866 2 0 Median 1.2958 1.1344 5.0804 2 0 Median 1.2419 1.3395 NaN 1 0 Median NaN NaN NaN 0 0 Median 336650000 168050000 168600000 295880000 149140000 146740000 8656700 3851000 4805700 26236000 12702000 13534000 3942000 1541900 2400100 1935500 817830 1117700 0 0 0 13942 1823 14510 71160;71161;71162;71163;71164;71165;71166;71167;71168;71169;71170;71171;71172;71173;71174;71175 72161;72162;72163;72164;72165;72166;72167;72168;72169;72170;72171;72172;72173;72174;72175;72176;72177;72178;72179 72165 17 IAAANGIGR DGRFYMKEAIQLIARIAAANGIGRLVIGQN IQLIARIAAANGIGRLVIGQNGILSTPAVS R I A G R L 3 1 1 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 841.477 P36871;A0A3B3ITK7 P36871 77 85 PGM1 Phosphoglucomutase-1 yes no 2 0.0025334 71.342 By MS/MS By matching By matching 1 2 1 1.1941 1.0973 18.307 4 Median NaN NaN NaN 0 0 Median 1.3914 1.2077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1072 0.91358 12.369 2 0 Median 1.1414 1.2379 NaN 1 0 Median NaN NaN NaN 0 0 Median 4396700 1837200 2559600 0 0 0 3193400 1273400 1920000 0 0 0 550610 267790 282820 652720 295950 356770 0 0 0 13943 2262 14511 71176;71177;71178;71179 72180 72180 1 IAAATPALR I A L R 4 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 9 0 882.5287 REV__P19823 yes no 2 0.0031588 67.032 By MS/MS 1 1.241 1.0833 NaN 1 Median NaN NaN NaN 0 0 Median 1.241 1.0833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7828900 3275900 4552900 0 0 0 7828900 3275900 4552900 0 0 0 0 0 0 0 0 0 0 0 0 + 13944 4536 14512 71180 72181 72181 1 IAADILIK RAELSKNGEWYEVLKIAADILIKEEILSEN EWYEVLKIAADILIKEEILSENDQLSNQVV K I A I K E 2 0 0 1 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 855.54295 Q9H583;Q5T3Q7 Q9H583 578 585 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.030964 38.806 By MS/MS 1 1.5234 1.6112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5234 1.6112 NaN 1 0 Median NaN NaN NaN 0 0 Median 2289400 893490 1395900 0 0 0 0 0 0 0 0 0 0 0 0 2289400 893490 1395900 0 0 0 13945 3086 14513 71181 72182 72182 1 IAAEIAQAEEQAR LKRLCGLKVEVDMEKIAAEIAQAEEQARKR EKIAAEIAQAEEQARKRQEEREKEAAEQAE K I A A R K 5 1 0 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 13 0 1398.7103 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3 Q969G3 285 297 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 2.9601E-25 205.18 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 2 2 1.1735 1.0809 23.909 14 Median NaN NaN NaN 0 0 Median 1.2732 1.0986 NaN 1 0 Median 1.0276 1.0022 17.463 4 0 Median 1.2327 1.0543 16.982 5 2 Median 1.0776 1.0942 4.0268 2 0 Median 1.988 1.6821 41.926 2 0 Median 425780000 209710000 216070000 0 0 0 2078200 839860 1238300 279160000 144170000 134990000 95281000 41483000 53798000 32845000 16678000 16167000 16417000 6539100 9878200 13946 389 14514 71182;71183;71184;71185;71186;71187;71188;71189;71190;71191;71192;71193;71194;71195 72183;72184;72185;72186;72187;72188;72189;72190;72191;72192;72193;72194;72195;72196;72197;72198;72199;72200;72201 72185 19 IAAENELNQSYK RIIQALKGTIDPKLRIAAENELNQSYKIIN KLRIAAENELNQSYKIINFAPSLLRIIVSD R I A Y K I 2 0 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 12 0 1378.6729 O15397 O15397 20 31 IPO8 Importin-8 yes yes 2 3.9932E-06 115.78 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1725 1.0549 8.6233 5 Median 0.98707 0.95833 NaN 1 0 Median 1.2801 1.086 NaN 1 0 Median 0.96561 0.93146 NaN 1 0 Median 1.2465 1.0987 5.7506 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44333000 19845000 24488000 7506100 3798800 3707300 7202100 2887600 4314500 14055000 6549500 7505300 15570000 6608800 8960800 0 0 0 0 0 0 13947 1545 14515 71196;71197;71198;71199;71200 72202;72203;72204;72205;72206;72207 72206 6 IAAGEVIQRPANAIK ______________________________ IAAGEVIQRPANAIKEMIENCLDAKSTSIQ R I A I K E 4 1 1 0 0 1 1 1 0 3 0 1 0 0 1 0 0 0 0 1 0 0 15 1 1549.894 H0Y818;P40692;F2Z298;E9PF25 H0Y818 11 25 MLH1 DNA mismatch repair protein Mlh1 yes no 3 0.0032093 30.567 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.78215 0.80138 24.204 5 Median 0.78215 0.80138 NaN 1 0 Median 1.3262 1.3322 NaN 1 0 Median 0.6841 0.7509 3.5223 2 0 Median 0.97699 0.92619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14307000 7883100 6423800 2751500 1448000 1303500 592820 245960 346860 8992400 5145000 3847400 1970200 1044100 926050 0 0 0 0 0 0 13948 1158 14516 71201;71202;71203;71204;71205 72208;72209 72208 2 IAAGQAVEAIVK SKVLIYLRSANWDTRIAAGQAVEAIVKNVP DTRIAAGQAVEAIVKNVPEWNPVPRTRQEP R I A V K N 4 0 0 0 0 1 1 1 0 2 0 1 0 0 0 0 0 0 0 2 0 0 12 0 1168.6816 A0A0A0MTH9;O14981 A0A0A0MTH9 60 71 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.00060254 70.399 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.2376 1.1572 6.7521 6 Median 1.1985 1.1519 NaN 1 0 Median 1.278 1.1285 NaN 1 0 Median 1.0541 1.1626 NaN 1 0 Median 1.3977 1.2716 NaN 1 0 Median 1.0313 1.0822 NaN 1 0 Median 1.4914 1.2825 NaN 1 0 Median 26962000 13219000 13743000 4652800 1945600 2707100 1949900 808470 1141400 14106000 7644500 6461600 1286700 530130 756600 4300900 2022400 2278400 666030 268050 397980 13949 191 14517 71206;71207;71208;71209;71210;71211 72210;72211;72212 72210 3 IAAGSSDFLVK TTNANHVVFNGDGTKIAAGSSDFLVKIVDV DGTKIAAGSSDFLVKIVDVMDSSQQKTFRG K I A V K I 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 2 0 0 0 1 0 0 11 0 1106.5972 O75717;C9JYB3 O75717 109 119 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes no 2 0.0048567 47.187 By MS/MS 1 0.94995 1.0234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94995 1.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6426400 3072400 3354000 0 0 0 0 0 0 6426400 3072400 3354000 0 0 0 0 0 0 0 0 0 13950 1693 14518 71212 72213 72213 1 IAAHLADFTPR EAIWSSEMRRLMIEKIAAHLADFTPRLQSN MIEKIAAHLADFTPRLQSNTRALYQYCPIP K I A P R L 3 1 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1210.6459 O75165 O75165 1215 1225 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 3 0.0024209 39.58 By MS/MS By matching By matching 1 1 1 0.86999 0.89146 4.7721 3 Median 0.86999 0.85513 NaN 1 0 Median 1.0422 0.89146 NaN 1 0 Median 0.84761 0.94053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5740700 2912200 2828500 3097100 1460700 1636500 799900 343330 456570 1843700 1108200 735470 0 0 0 0 0 0 0 0 0 13951 1653 14519 71213;71214;71215 72214;72215 72215 2 IAAIDSLNQYTR PDISPPTYVKEELSKIAAIDSLNQYTRGFG LSKIAAIDSLNQYTRGFGHPSLVKALSYLY K I A T R G 2 1 1 1 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 12 0 1363.7096 Q6YP21;A0A0A0MRN7 Q6YP21 88 99 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 2 6.993E-06 159.4 By MS/MS By matching By matching By matching 2 1 2 1 1.0495 1.0922 38.069 6 Median 1.2934 1.2911 10.743 2 1 Median 2.3712 2.0754 NaN 1 0 Median 0.88938 0.92921 9.9468 2 0 Median 0.80661 0.70579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25709000 11065000 14644000 20915000 8657800 12257000 678980 320650 358330 3734100 1893800 1840300 380720 192700 188020 0 0 0 0 0 0 13952 3196 14520 71216;71217;71218;71219;71220;71221 72216;72217;72218 72218 3 IAALNASSTIEDDHEGSFK ______________________________ NASSTIEDDHEGSFKSHKTQTKEAQEAEAF R I A F K S 3 0 1 2 0 0 2 1 1 2 1 1 0 1 0 3 1 0 0 0 0 0 19 0 2003.9436 A0A087WWW8;Q9Y6J0;C9JT60;C9J068 A0A087WWW8 4 22 CABIN1 Calcineurin-binding protein cabin-1 yes no 3 2.039E-13 99.569 By MS/MS 1 0.84713 0.93535 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84713 0.93535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10645000 5867400 4777900 0 0 0 0 0 0 10645000 5867400 4777900 0 0 0 0 0 0 0 0 0 13953 64 14521 71222 72219;72220 72220 2 IAALQAFADQLIAAGHYAK KHEDFDKAINVQEEKIAALQAFADQLIAAG QAFADQLIAAGHYAKGDISSRRNEVLDRWR K I A A K G 7 0 0 1 0 2 0 1 1 2 2 1 0 1 0 0 0 0 1 0 0 0 19 0 1971.0578 A0A0D9SF54;Q13813 Q13813 1501 1519 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.0696E-08 70.235 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 2 0.99914 1.0528 17.966 10 Median 1.3239 1.0796 13.276 3 0 Plateau 1.2646 1.1096 NaN 1 0 Median 0.92118 0.94986 20.587 4 0 Median NaN NaN NaN 0 0 Median 0.99914 0.99751 8.6005 2 0 Median NaN NaN NaN 0 0 Median 53677000 25564000 28113000 8020200 3205600 4814600 7492400 3217300 4275100 36143000 18246000 17896000 0 0 0 2021600 894710 1126900 0 0 0 13954 264;2838 14522 71223;71224;71225;71226;71227;71228;71229;71230;71231;71232 72221;72222;72223;72224;72225;72226;72227;72228;72229 72224 9 IAAQLLQQEQK EEEDDDLKEVTDLRKIAAQLLQQEQKNRIL DLRKIAAQLLQQEQKNRILNHSTSVMRNKP K I A Q K N 2 0 0 0 0 4 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1268.7089 Q5VUJ6 Q5VUJ6 476 486 LRCH2 Leucine-rich repeat and calponin homology domain-containing protein 2 yes yes 2 0.00042523 69.954 By matching By MS/MS By MS/MS 1 2 1 0.90572 0.89589 16.88 4 Median 0.90402 0.90519 NaN 1 0 Median 1.0923 0.95874 28.402 2 0 Median 0.804 0.88669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9703900 4105200 5598700 1441300 671300 770030 3083500 1341000 1742600 5179000 2092900 3086100 0 0 0 0 0 0 0 0 0 13955 3114 14523 71233;71234;71235;71236 72230;72231;72232 72230 3 IAAQTLLGTAK EGAVKMGMPSSLAHRIAAQTLLGTAKMLLH LAHRIAAQTLLGTAKMLLHEGQHPAQLRSD R I A A K M 3 0 0 0 0 1 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1085.6445 A0A0A0MQS1;Q53H96;B5MD87 A0A0A0MQS1 220 230 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 2 6.4632E-05 152.28 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 1 1.3858 1.1452 25.724 7 Median 0.93341 0.86462 NaN 1 0 Median 1.8975 1.5978 18.978 2 0 Median 0.98981 0.93914 NaN 1 0 Median 1.3858 1.1435 NaN 1 0 Median 1.114 1.1452 NaN 1 0 Median 1.6988 1.4082 NaN 1 0 Median 41088000 19281000 21807000 24059000 12055000 12004000 4636700 1574000 3062700 4003400 2154000 1849500 824390 358530 465860 3782200 1681800 2100400 3782200 1457700 2324400 13956 146 14524 71237;71238;71239;71240;71241;71242;71243 72233;72234;72235;72236;72237 72233 5 IAASSSFR PEQSNGGFPCTTAPKIAASSSFRSSDKPIR PCTTAPKIAASSSFRSSDKPIRTPSRSMPP K I A F R S 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 8 0 837.43447 Q99961 Q99961 283 290 SH3GL1 Endophilin-A2 yes yes 2 0.042262 36.395 By MS/MS By matching 2 1 1.2521 1.1038 5.2165 3 Plateau NaN NaN NaN 0 0 Median 1.2588 1.0923 1.4731 2 0 Median NaN NaN NaN 0 0 Median 1.2521 0.9998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2859400 1299000 1560400 0 0 0 2653200 1212900 1440200 0 0 0 206230 86105 120130 0 0 0 0 0 0 13957 3774 14525 71244;71245;71246 72238 72238 1 IAATGVVLDLDK FLAIQSVSGIMPDFRIAATGVVLDLDKSIK DFRIAATGVVLDLDKSIKIVKKLKLTGFPY R I A D K S 2 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 12 0 1213.6918 Q14692 Q14692 1008 1019 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.00023271 84.658 By matching By MS/MS 1 3 1.1542 1.1132 99.689 4 Median NaN NaN NaN 0 0 Median 1.2368 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1034 1.1577 116.55 3 0 Median NaN NaN NaN 0 0 Median 8752900 4800800 3952100 0 0 0 597990 248740 349250 0 0 0 0 0 0 8154900 4552100 3602800 0 0 0 13958 2893 14526 71247;71248;71249;71250 72239;72240;72241 72239 3 IAAWPVSEFFLIR WFIFTQEVLTPLFPRIAAWPVSEFFLIRDT PRIAAWPVSEFFLIRDTSLIPNVLWFEYTV R I A I R D 2 1 0 0 0 0 1 0 0 2 1 0 0 2 1 1 0 1 0 1 0 0 13 0 1547.85 Q86YN1 Q86YN1 194 206 DOLPP1 Dolichyldiphosphatase 1 yes yes 2 0.010506 35.959 By MS/MS By MS/MS 3 1 1.0985 1.0402 5.91 4 Median 1.0333 1.0442 5.2781 3 0 Median 1.1677 0.98902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4916800 2342800 2573900 3523600 1704400 1819100 1393200 638410 754800 0 0 0 0 0 0 0 0 0 0 0 0 13959 3308 14527 71251;71252;71253;71254 72242;72243;72244;72245;72246 72243 5 IAAYAYSALSQIR ASEPIPFSDLQQVSRIAAYAYSALSQIRVD SRIAAYAYSALSQIRVDAKEELVVQFGIP_ R I A I R V 4 1 0 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 2 0 0 0 13 0 1425.7616 Q6IAA8 Q6IAA8 135 147 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 2;3 0.0001325 96.229 By MS/MS By MS/MS By MS/MS 2 2 2 1.2635 1.2799 25.583 6 Median 0.85501 0.84152 5.1324 2 1 Median 1.7107 1.4306 10.672 2 0 Median 1.2635 1.2799 0.14607 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16604000 7979200 8624600 6599300 3682000 2917300 2957200 1130900 1826300 7047300 3166300 3881000 0 0 0 0 0 0 0 0 0 13960 3137 14528 71255;71256;71257;71258;71259;71260 72247;72248;72249;72250;72251 72249 5 IAAYLFK LAQRLEKHELIEFRRIAAYLFKGNNRWKQS HELIEFRRIAAYLFKGNNRWKQSVELCKKD R I A F K G 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 7 0 824.47963 A0A087WVQ6;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 1514 1520 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0060381 94.669 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 3 2 1 2 1.3079 1.2449 17.359 17 Median 1.2946 1.2512 12.701 5 0 Median 1.3866 1.2253 17.599 4 0 Median 0.94645 1.0449 15.317 3 0 Plateau 1.4847 1.3254 4.7827 2 0 Median 1.324 1.3884 NaN 1 0 Median 1.456 1.2237 16.659 2 0 Median 139340000 61160000 78177000 73461000 31797000 41663000 37449000 15627000 21822000 19565000 9942600 9622700 2270000 853610 1416400 4788400 2204100 2584300 1803600 735440 1068100 13961 44 14529 71261;71262;71263;71264;71265;71266;71267;71268;71269;71270;71271;71272;71273;71274;71275;71276;71277 72252;72253;72254;72255;72256;72257;72258;72259;72260;72261;72262;72263;72264;72265;72266;72267;72268;72269 72266 18 IACLDFSLQK VVGSQGMPKRIVNAKIACLDFSLQKTKMKL IVNAKIACLDFSLQKTKMKLGVQVVITDPE K I A Q K T 1 0 0 1 1 1 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1193.6114 P17987;E7ERF2;E7EQR6;F5H282;F5GZ03 P17987 234 243 TCP1 T-complex protein 1 subunit alpha yes no 2 0.0070645 48.283 By MS/MS By MS/MS 1 1 1.1793 1.0592 0.97262 2 Median 1.0932 1.0519 NaN 1 0 Median 1.2722 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12766000 5474900 7291300 3026700 1358400 1668300 9739500 4116500 5623000 0 0 0 0 0 0 0 0 0 0 0 0 13962 2051 14530 71278;71279 72270;72271 72270 2 IADDKYNDTFWK IRKKLVRKTLDMIKKIADDKYNDTFWKEFG IKKIADDKYNDTFWKEFGTNIKLGVIEDHS K I A W K E 1 0 1 3 0 0 0 0 0 1 0 2 0 1 0 0 1 1 1 0 0 0 12 1 1514.7042 P14625 P14625 475 486 HSP90B1 Endoplasmin yes yes 2;3 0.001208 56.548 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 1 1 1 1.1981 1.1961 21.307 10 Median 1.1207 1.1603 9.6771 4 1 Median 1.4614 1.4157 8.8117 3 0 Median 0.93186 1.065 NaN 1 0 Median 1.4086 1.3761 NaN 1 0 Median 1.849 2.069 NaN 1 0 Median NaN NaN NaN 0 0 Median 77990000 33984000 44007000 46034000 20710000 25324000 23802000 9326900 14475000 5628900 2955100 2673800 377530 175560 201970 2147300 815790 1331500 0 0 0 13963 2006 14531 71280;71281;71282;71283;71284;71285;71286;71287;71288;71289 72272;72273;72274;72275;72276;72277;72278;72279 72273 8 IADDKYNDTFWKEFGTNIK IRKKLVRKTLDMIKKIADDKYNDTFWKEFG KYNDTFWKEFGTNIKLGVIEDHSNRTRLAK K I A I K L 1 0 2 3 0 0 1 1 0 2 0 3 0 2 0 0 2 1 1 0 0 0 19 2 2304.1063 P14625 P14625 475 493 HSP90B1 Endoplasmin yes yes 3 4.6862E-05 41.348 By MS/MS 2 0.7419 0.79718 46.309 2 Median 0.7419 0.79718 46.309 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17764000 7767900 9995800 17764000 7767900 9995800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13964 2006 14532 71290;71291 72280;72281 72281 2 IADEDRGNWR RPSWRNTDDDRPPRRIADEDRGNWRHADDD RPPRRIADEDRGNWRHADDDRPPRRGLDED R I A W R H 1 2 1 2 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 10 1 1230.5741 Q14152 Q14152 1001 1010 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0010276 57.532 By MS/MS 1 0.98778 1.0563 NaN 1 Median 0.98778 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5530000 2696400 2833600 5530000 2696400 2833600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13965 2860 14533 71292 72282;72283 72283 2 IADFGLSNMMSDGEFLR LKPENVLLDAHMNAKIADFGLSNMMSDGEF DFGLSNMMSDGEFLRTSCGSPNYAAPEVIS K I A L R T 1 1 1 2 0 0 1 2 0 1 2 0 2 2 0 2 0 0 0 0 0 0 17 0 1901.8652 Q13131;Q96E92;A0A087WXX9;P54646 Q13131 166 182 PRKAA1;PRKAA2 5-AMP-activated protein kinase catalytic subunit alpha-1;5-AMP-activated protein kinase catalytic subunit alpha-2 yes no 2 1.849E-07 73.848 By MS/MS 1 0.94361 0.92622 NaN 1 Median 0.94361 0.92622 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3975800 2148100 1827700 3975800 2148100 1827700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13966 2788 14534 71293 72284 72284 1 IADFGWSVHAPSLR IKPENLLLGLKGELKIADFGWSVHAPSLRR KIADFGWSVHAPSLRRKTMCGTLDYLPPEM K I A L R R 2 1 0 1 0 0 0 1 1 1 1 0 0 1 1 2 0 1 0 1 0 0 14 0 1554.7943 Q96GD4;J3QLN8;J3KT86 Q96GD4 216 229 AURKB Aurora kinase B yes no 3 0.026684 19.767 By matching By MS/MS By matching 1 1 1 0.99724 0.87912 48.11 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45547 0.47072 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1343 1.2125 NaN 1 0 Median 0.99724 0.87912 NaN 1 0 Median 3999300 2127700 1871500 0 0 0 0 0 0 728160 473770 254390 0 0 0 3076600 1565500 1511100 194490 88509 105980 13967 3656 14535 71294;71295;71296 72285;72286 72286 2 IADGYEQAAR EEAEQLLDRGIHPIRIADGYEQAARVAIEH IHPIRIADGYEQAARVAIEHLDKISDSVLV R I A A R V 3 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1092.52 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 133 142 CCT5 T-complex protein 1 subunit epsilon yes no 2 6.7536E-05 133.58 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1582 1.0916 15.204 5 Median 1.1582 1.0916 NaN 1 0 Median 1.2509 1.0694 14.485 2 1 Median 1.3153 1.3815 NaN 1 0 Median 1.1397 0.96158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97589000 43874000 53715000 30021000 12994000 17027000 64655000 29539000 35116000 2420100 1125800 1294300 493410 215140 278270 0 0 0 0 0 0 13968 2364 14536 71297;71298;71299;71300;71301 72287;72288;72289;72290;72291;72292;72293;72294;72295 72292 9 IADISQVYTQNAEMR YKYGYEIPVDMLCKRIADISQVYTQNAEMR IADISQVYTQNAEMRPLGCWSFLFLGMILI R I A M R P 2 1 1 1 0 2 1 0 0 2 0 0 1 0 0 1 1 0 1 1 0 0 15 0 1737.8356 G3V5Z7;P60900;G3V295;G3V3I1;H0YJC4 G3V5Z7 118 132 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 3.0329E-10 116.01 By MS/MS 1 0.78677 0.74555 NaN 1 Median 0.78677 0.74555 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9308900 4498000 4810900 9308900 4498000 4810900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13969 1122 14537 71302 72296 72296 1 IADMGHLK TLSMSADVPLVVEYKIADMGHLKYYLAPKI PLVVEYKIADMGHLKYYLAPKIEDEEGS__ K I A L K Y 1 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 883.45857 P12004 P12004 241 248 PCNA Proliferating cell nuclear antigen yes yes 2 0.0034492 95.541 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.0693 1.0211 5.0839 6 Median 1.0745 0.97489 NaN 1 0 Median 1.2968 1.0888 NaN 1 0 Median 1.0268 0.98552 4.8389 2 0 Median 1.222 1.0223 NaN 1 0 Median 1.0451 1.0655 NaN 1 0 Median NaN NaN NaN 0 0 Median 71266000 32940000 38327000 31603000 15246000 16357000 15128000 6479000 8648800 6610800 3120500 3490300 15690000 7144000 8545800 2235000 950500 1284500 0 0 0 13970 1974 14538 71303;71304;71305;71306;71307;71308 72297;72298;72299;72300;72301;72302;72303;72304;72305 72298 9 IADPEHDHTGFLTEYVATR NTTCDLKICDFGLARIADPEHDHTGFLTEY EHDHTGFLTEYVATRWYRAPEIMLNSKGYT R I A T R W 2 1 0 2 0 0 2 1 2 1 1 0 0 1 1 0 3 0 1 1 0 0 19 0 2171.0283 P27361;E9PJF0;E9PQW4;B3KR49 P27361 190 208 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase yes no 3 2.0071E-18 127.97 By matching By MS/MS By matching 1 1 1 0.92424 0.78777 5.9161 3 Median NaN NaN NaN 0 0 Median 0.92424 0.81913 NaN 1 0 Median 0.66787 0.72923 NaN 1 0 Median 0.93338 0.78777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16402000 8979200 7423300 0 0 0 472670 249340 223320 15600000 8560800 7039100 329920 169060 160870 0 0 0 0 0 0 13971 2153 14539 71309;71310;71311 72306;72307 72306 2 IADPTLAEMGK ______________________________ SLEKIADPTLAEMGKNLKEAVKMLEDSQRR K I A G K N 2 0 0 1 0 0 1 1 0 1 1 1 1 0 1 0 1 0 0 0 0 0 11 0 1144.5798 Q6P996;Q86XE2;J3KNK7;Q6P474;H3BPV5;H3BM88;A0A0J9YXH6 Q6P996 8 18 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 yes no 2 0.00015742 90.108 By MS/MS By matching 1 1 0.84456 0.7663 19.024 2 Median 0.71461 0.66986 NaN 1 0 Median 0.99814 0.87664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8646600 5028300 3618300 5295300 2946000 2349300 3351300 2082300 1269000 0 0 0 0 0 0 0 0 0 0 0 0 13972 3164 14540 71312;71313 72308 72308 1 IADQFLGAMYTLPR TVHGALLSGLREAGRIADQFLGAMYTLPRQ RIADQFLGAMYTLPRQATPGVPAQQSPSM_ R I A P R Q 2 1 0 1 0 1 0 1 0 1 2 0 1 1 1 0 1 0 1 0 0 0 14 0 1594.8177 O60341;R4GMQ1;R4GMP9 O60341 825 838 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 0.00078102 68.069 By MS/MS By MS/MS By MS/MS 2 1 1 1.3826 1.3124 37.135 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1066 1.1773 42.767 2 1 Median 1.2705 1.0812 NaN 1 0 Median 1.9106 1.9812 NaN 1 1 Median NaN NaN NaN 0 0 Median 32303000 11226000 21077000 0 0 0 0 0 0 23514000 8928700 14585000 2626800 1116800 1509900 6162400 1180900 4981500 0 0 0 13973 1613 14541 71314;71315;71316;71317 72309;72310;72311;72312;72313;72314 72311 6 IADQLDNIVDMR QRGGVITDEEETSKKIADQLDNIVDMREYD SKKIADQLDNIVDMREYDVPYHIRLSIDLK K I A M R E 1 1 1 3 0 1 0 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 12 0 1401.6922 Q07864;F5H1D6;F5H7E4 Q07864 211 222 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.001303 54.608 By matching By matching By MS/MS 1 1 1 1.0093 0.84129 125.32 3 Median 7.1599 7.2222 NaN 1 0 Median 1.0093 0.84129 NaN 1 0 Median 0.7268 0.8077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9833700 2810700 7023000 5973900 713720 5260200 1232100 500090 732050 2627700 1596900 1030800 0 0 0 0 0 0 0 0 0 13974 1020 14542 71318;71319;71320 72315;72316 72315 2 IADREDEYKK STEQYDPFAEHRPPKIADREDEYKKHRRTM HRPPKIADREDEYKKHRRTMIISPERLDPF K I A K K H 1 1 0 2 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 2 1265.6252 O75533;B4DGZ4;A0A494C1M2 O75533 112 121 SF3B1 Splicing factor 3B subunit 1 yes no 3 0.047123 19.607 By MS/MS By matching By matching By matching 1 1 1 3 0.98196 1.1391 7.3402 6 Median NaN NaN NaN 0 0 Median 1.2405 1.229 NaN 1 0 Median 0.93444 1.0648 NaN 1 0 Median 1.0716 1.2213 NaN 1 0 Median 0.91761 1.0787 7.0062 3 0 Median NaN NaN NaN 0 0 Median 4173300 1962100 2211200 0 0 0 1413500 627340 786160 372050 184420 187630 242840 110680 132160 2144900 1039600 1105200 0 0 0 13975 1683 14543 71321;71322;71323;71324;71325;71326 72317 72317 1 IADYYYEER TVLQDERQSQALILKIADYYYEERTCILRC QALILKIADYYYEERTCILRCVLHLLTYFQ K I A E R T 1 1 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 3 0 0 0 9 0 1220.535 Q5SRE5 Q5SRE5 125 133 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.0027349 69.954 By matching By MS/MS By MS/MS 1 1 1 1.1942 1.0576 0.64708 3 Plateau NaN NaN NaN 0 0 Median 1.2339 1.0448 NaN 1 0 Median 0.96408 1.0578 NaN 1 0 Median 1.1942 1.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9596300 4665200 4931100 0 0 0 938990 421700 517290 6934400 3462400 3472000 1722900 781080 941770 0 0 0 0 0 0 13976 3074 14544 71327;71328;71329 72318;72319;72320;72321 72320 4 IAEAEIENLTGAR RREKKAALEKEREERIAEAEIENLTGARHM ERIAEAEIENLTGARHMESEKLAQILAARQ R I A A R H 3 1 1 0 0 0 3 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 13 0 1385.7151 A0A087X0W9;Q8N6M0 A0A087X0W9 149 161 OTUD6B OTU domain-containing protein 6B yes no 2 3.992E-07 109.24 By MS/MS By MS/MS By MS/MS 2 3 3 1.2174 1.0345 30.558 8 Median 1.3578 1.3207 60.912 2 0 Median NaN NaN NaN 0 0 Median 1.2741 1.2339 12.878 3 0 Median 1.239 1.0334 18.25 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175700000 76119000 99578000 8890600 3891200 4999400 0 0 0 137580000 59317000 78264000 29226000 12911000 16314000 0 0 0 0 0 0 13977 115 14545 71330;71331;71332;71333;71334;71335;71336;71337 72322;72323;72324;72325;72326;72327;72328 72326 7 IAEALLSDLPGFR VWVRQLELKVDDTIKIAEALLSDLPGFRCF IKIAEALLSDLPGFRCFHQSAKDLLDQLKL K I A F R C 2 1 0 1 0 0 1 1 0 1 3 0 0 1 1 1 0 0 0 0 0 0 13 0 1400.7664 Q8NCM8;A0A3B3ISP9;A0A3B3IT36 Q8NCM8 502 514 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 1.496E-06 115.78 By MS/MS By MS/MS 2 2 0.85809 0.79641 20.869 4 Median 0.71162 0.71189 5.7905 2 0 Median 1.1371 0.96989 17.794 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5533900 3071400 2462500 3881600 2305100 1576500 1652300 766310 886000 0 0 0 0 0 0 0 0 0 0 0 0 13978 3418 14546 71338;71339;71340;71341 72329;72330;72331 72330 3 IAECSSQLAEEEEK QNSKFIKEKKLMEDRIAECSSQLAEEEEKA RIAECSSQLAEEEEKAKNLAKIRNKQEVMI R I A E K A 2 0 0 0 1 1 5 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 14 0 1621.7141 P35580 P35580 1008 1021 MYH10 Myosin-10 yes yes 2 0.00076529 61.344 By MS/MS 1 1.2351 1.0859 NaN 1 Median NaN NaN NaN 0 0 Median 1.2351 1.0859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1574000 586550 987430 0 0 0 1574000 586550 987430 0 0 0 0 0 0 0 0 0 0 0 0 13979 2245 14547 71342 72332;72333 72332 2 IAECSSQLAEEEEKAK QNSKFIKEKKLMEDRIAECSSQLAEEEEKA AECSSQLAEEEEKAKNLAKIRNKQEVMISD R I A A K N 3 0 0 0 1 1 5 0 0 1 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1820.8462 P35580 P35580 1008 1023 MYH10 Myosin-10 yes yes 3 4.4428E-05 60.918 By MS/MS 1 1.1037 1.0667 NaN 1 Median NaN NaN NaN 0 0 Median 1.1037 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3357200 1330600 2026600 0 0 0 3357200 1330600 2026600 0 0 0 0 0 0 0 0 0 0 0 0 13980 2245 14548 71343 72334;72335 72335 2 IAEENGAAFAGGTSLIQK INKVAVFTENASEVKIAEENGAAFAGGTSL ENGAAFAGGTSLIQKIWDDEIVADFYVAVP K I A Q K I 4 0 1 0 0 1 2 3 0 2 1 1 0 1 0 1 1 0 0 0 0 0 18 0 1775.9054 Q9BYD6;H0Y8N7 Q9BYD6 169 186 MRPL1 39S ribosomal protein L1, mitochondrial yes no 2 4.989E-06 68.44 By MS/MS By matching By MS/MS 1 1 1 1.0734 1.0025 10.498 3 Median 1.0734 1.0025 NaN 1 0 Median 1.3579 1.1515 NaN 1 0 Median 0.97965 0.93725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12425000 6212400 6212200 7953700 4164000 3789600 746500 289510 456990 3724400 1758900 1965600 0 0 0 0 0 0 0 0 0 13981 3890 14549 71344;71345;71346 72336;72337;72338;72339 72337 4 IAEENIMK KREKQREQMEQMKQRIAEENIMKSNIDKKF MEQMKQRIAEENIMKSNIDKKFSAHYDAVE R I A M K S 1 0 1 0 0 0 2 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 8 0 946.47937 Q14320 Q14320 35 42 FAM50A Protein FAM50A yes yes 2 0.02273 65.038 By MS/MS 1 2.4544 2.588 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4544 2.588 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5516600 1622400 3894200 0 0 0 0 0 0 5516600 1622400 3894200 0 0 0 0 0 0 0 0 0 13982 2873 14550 71347 72340 72340 1 IAEEVVKIEER DASEQKTELERLKHRIAEEVVKIEERKNKI LKHRIAEEVVKIEERKNKIDDELKEVQPLV R I A E R K 1 1 0 0 0 0 4 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 11 1 1313.7191 Q8NCM8 Q8NCM8 2960 2970 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2;3 0.00091095 98.943 By MS/MS 2 0.98901 1.0203 1.7319 2 Median 0.98901 1.0203 1.7319 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12167000 6558500 5608100 12167000 6558500 5608100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13983 3418 14551 71348;71349 72341;72342;72343 72342 3 IAEFAFEYAR VVQSIKLITEGASKRIAEFAFEYARNNHRS GASKRIAEFAFEYARNNHRSNVTAVHKANI R I A A R N 3 1 0 0 0 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1215.5924 P50213;H0YL72;H0YMU3 P50213 179 188 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.00066973 96.331 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1634 1.0515 78.635 5 Median 1.0511 1.0515 NaN 1 0 Median 1.4076 1.1706 NaN 1 0 Median 0.27556 0.3236 NaN 1 0 Median 1.1634 1.0361 NaN 1 0 Median 2.794 2.9632 NaN 1 0 Median NaN NaN NaN 0 0 Median 40739000 19540000 21200000 24992000 11898000 13094000 12051000 5224400 6826100 2388900 1992100 396820 106980 52945 54040 1200900 371850 829070 0 0 0 13984 2409 14552 71350;71351;71352;71353;71354 72344;72345 72344 1 IAEFTTNLTEEEEK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS RIAEFTTNLTEEEEKSKSLAKLKNKHEAMI R I A E K S 1 0 1 0 0 0 5 0 0 1 1 1 0 1 0 0 3 0 0 0 0 0 14 0 1652.7781 P35579 P35579 1001 1014 MYH9 Myosin-9 yes yes 2 3.2741E-32 208.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1 1.1694 1.0991 10.011 8 Median 1.1736 1.1412 6.8958 2 1 Median 1.1181 0.98606 7.2755 2 0 Median 1.0338 1.1389 NaN 1 0 Median 1.1588 1.0483 NaN 1 0 Median 1.2496 1.3078 NaN 1 0 Median 1.2891 1.1115 NaN 1 0 Median 221780000 101950000 119830000 80936000 34669000 46267000 109700000 52326000 57371000 19663000 9712100 9950700 2376300 1155700 1220600 8682800 3896900 4785900 424330 187420 236920 13985 2244 14553 71355;71356;71357;71358;71359;71360;71361;71362 72346;72347;72348;72349;72350;72351;72352;72353;72354;72355;72356;72357;72358;72359 72347 14 IAEFTTNLTEEEEKSK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS AEFTTNLTEEEEKSKSLAKLKNKHEAMITD R I A S K S 1 0 1 0 0 0 5 0 0 1 1 2 0 1 0 1 3 0 0 0 0 0 16 1 1867.9051 P35579 P35579 1001 1016 MYH9 Myosin-9 yes yes 2;3 3.2539E-58 229.29 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 4 2 2 1 3 1 1.1416 1.0935 22.862 13 Median 1.191 1.1485 11.866 4 0 Median 1.1159 1.0699 3.0921 2 0 Median 0.66376 0.78218 56.959 2 0 Median 1.2032 1.129 NaN 1 0 Median 1.0263 1.1005 13.555 3 1 Median 1.1416 1.0187 NaN 1 0 Median 615930000 278300000 337630000 498930000 212480000 286450000 32112000 14786000 17326000 47770000 34458000 13312000 2330300 1094100 1236200 33372000 14818000 18553000 1416300 668010 748250 13986 2244 14554 71363;71364;71365;71366;71367;71368;71369;71370;71371;71372;71373;71374;71375 72360;72361;72362;72363;72364;72365;72366;72367;72368;72369;72370;72371;72372;72373 72365 14 IAEGAQQGDPLSR YRDFDKCRFAGFCRKIAEGAQQGDPLSRYI RKIAEGAQQGDPLSRYIFRKAGEMLGRHIV K I A S R Y 2 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1340.6684 H7C3G9;Q9UJ70;C9JEV6;H7C286;E9PPU6 H7C3G9 220 232 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.00058618 69.979 By matching By MS/MS 1 1 1.0117 0.91452 22.694 2 Median 0.80323 0.77894 NaN 1 0 Median 1.2743 1.0737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3869900 1779000 2090800 1954700 943480 1011200 1915200 835550 1079600 0 0 0 0 0 0 0 0 0 0 0 0 13987 1265 14555 71376;71377 72374;72375 72374 2 IAEGVNSLLQMAGLLAR LKLEFIKEIGYTHMKIAEGVNSLLQMAGLL EGVNSLLQMAGLLARLCQKTMAPVAS____ K I A A R L 3 1 1 0 0 1 1 2 0 1 4 0 1 0 0 1 0 0 0 1 0 0 17 0 1754.9713 P35250;A0A087WVY3 P35250 327 343 RFC2 Replication factor C subunit 2 yes no 2 4.793E-10 99.522 By MS/MS By MS/MS By MS/MS 2 3 1 1.0266 1.0282 33.638 6 Median NaN NaN NaN 0 0 Median 0.6829 0.69752 55.855 2 0 Median 0.9889 1.0211 9.1986 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6141 1.2085 NaN 1 0 Median 15244000 6535800 8707900 0 0 0 9323400 4093800 5229600 3157500 1574400 1583100 0 0 0 0 0 0 2762800 867620 1895200 13988 2238 14556;14557 71378;71379;71380;71381;71382;71383 72376;72377;72378;72379 72379 974 4 IAEIEAEMAR ______________________________ STLAKIAEIEAEMARTQKNKATAHHLGLLK K I A A R T 3 1 0 0 0 0 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1131.5594 Q9Y295;F8WEE0 Q9Y295 8 17 DRG1 Developmentally-regulated GTP-binding protein 1 yes no 2 0.00034968 124.23 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1141 1.2191 68.301 5 Median 2.1687 2.4149 84.098 2 0 Median 0.91882 0.80143 NaN 1 0 Median 1.1141 1.2191 NaN 1 0 Median 1.0117 0.86158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62302000 25784000 36518000 19202000 6480800 12721000 12286000 6352900 5933600 24980000 10377000 14602000 5833800 2573300 3260500 0 0 0 0 0 0 13989 4382 14558 71384;71385;71386;71387;71388 72380;72381;72382;72383;72384;72385;72386 72381 7 IAELCDDPKER EGEEQIRGALAEARKIAELCDDPKERDDIL EARKIAELCDDPKERDDILRSLGEISALTS K I A E R D 1 1 0 2 1 0 2 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 11 1 1344.6344 P18206 P18206 418 428 VCL Vinculin yes yes 2 0.00076161 90.629 By MS/MS 1 1.4322 1.361 NaN 1 Median NaN NaN NaN 0 0 Median 1.4322 1.361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1660100 655860 1004200 0 0 0 1660100 655860 1004200 0 0 0 0 0 0 0 0 0 0 0 0 13990 2057 14559 71389 72387 72387 1 IAELLENVTLIHKPVSLQPR KEGLVPVSEDPVAIKIAELLENVTLIHKPV ENVTLIHKPVSLQPRGLINKGNWCYINATL K I A P R G 1 1 1 0 0 1 2 0 1 2 4 1 0 0 2 1 1 0 0 2 0 0 20 1 2269.3158 Q14694;J3KT19 Q14694 396 415 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 4 0.0099172 21.599 By MS/MS 1 0.92822 0.92743 NaN 1 Median NaN NaN NaN 0 0 Median 0.92822 0.92743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2500200 1338200 1162000 0 0 0 2500200 1338200 1162000 0 0 0 0 0 0 0 0 0 0 0 0 13991 2894 14560 71390 72388 72388 1 IAELLSPGSVDPLTR RKHINTWVAEKTEGKIAELLSPGSVDPLTR IAELLSPGSVDPLTRLVLVNAVYFRGNWDE K I A T R L 1 1 0 1 0 0 1 1 0 1 3 0 0 0 2 2 1 0 0 1 0 0 15 0 1566.8617 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 150 164 SERPINB6 Serpin B6 yes no 2 5.8506E-08 149.96 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 0.794 0.77318 28.79 9 Median 0.68569 0.68689 12.208 3 1 Median 0.93852 0.80188 14.558 3 0 Median 0.55411 0.56472 63.239 2 0 Median 1.0001 0.86349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54770000 30611000 24159000 35660000 20494000 15166000 11101000 5724100 5377200 5054000 2809500 2244500 2954200 1583400 1370800 0 0 0 0 0 0 13992 1 14561 71391;71392;71393;71394;71395;71396;71397;71398;71399 72389;72390;72391;72392;72393;72394;72395;72396 72391 8 IAELMPGASGAEVK HSRKMNLTRGINLRKIAELMPGASGAEVKG KIAELMPGASGAEVKGVCTEAGMYALRERR K I A V K G 3 0 0 0 0 0 2 2 0 1 1 1 1 0 1 1 0 0 0 1 0 0 14 0 1371.7068 P62195 P62195 347 360 PSMC5 26S protease regulatory subunit 8 yes yes 2 0.00055045 67.385 By MS/MS By matching By matching 2 1 1 1.0152 0.92173 39.264 4 Median 1.3819 1.2858 54.714 2 1 Median 0.9244 0.79714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0882 0.97283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38786000 18121000 20665000 32857000 15203000 17654000 2473200 1204900 1268300 0 0 0 3455200 1713100 1742100 0 0 0 0 0 0 13993 2572 14562;14563 71400;71401;71402;71403 72397;72398;72399 72397 1243 3 IAELSEDDQK NKPLIVVANKCDVKRIAELSEDDQKIFTDL CDVKRIAELSEDDQKIFTDLQSEGFPVIET R I A Q K I 1 0 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q9BZE4 Q9BZE4 296 305 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.00022687 128.36 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.1636 1.0189 17.169 7 Median 1.3751 1.3892 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3179 1.4 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0396 1.0461 5.6982 3 0 Plateau 1.1998 0.99175 3.8151 2 0 Median 51397000 24467000 26930000 1129700 446260 683480 0 0 0 2051500 1032200 1019300 0 0 0 43041000 20720000 22321000 5175300 2268700 2906600 13994 3898 14564 71404;71405;71406;71407;71408;71409;71410 72400;72401;72402;72403;72404;72405;72406;72407;72408;72409 72404 9 IAEMEYSGANSIFLR KCSIPVLHSSAAMLKIAEMEYSGANSIFLR IAEMEYSGANSIFLRLLLDKKYALPYRVLD K I A L R L 2 1 1 0 0 0 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 0 15 0 1699.824 Q13895 Q13895 329 343 BYSL Bystin yes yes 2 0.00038099 62.408 By MS/MS By matching By MS/MS 1 1 1 1.0661 0.95548 19.326 3 Median 1.3305 1.3229 NaN 1 0 Median 1.0661 0.93847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95222 0.95548 NaN 1 0 Median NaN NaN NaN 0 0 Median 7488900 3350400 4138500 1725500 777460 948070 550960 246850 304110 0 0 0 0 0 0 5212400 2326000 2886300 0 0 0 13995 2845 14565 71411;71412;71413 72410;72411 72411 2 IAEMTDIKPILR QETFSGMDQVRLMKRIAEMTDIKPILRKLP MKRIAEMTDIKPILRKLPRIKKHLLNGDNM R I A L R K 1 1 0 1 0 0 1 0 0 3 1 1 1 0 1 0 1 0 0 0 0 0 12 1 1398.7905 Q5JRX3;A0A0A0MRX9;H0Y7L7 Q5JRX3 752 763 PITRM1 Presequence protease, mitochondrial yes no 2;3 2.3163E-05 101.65 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.97127 1.0209 51.937 5 Median 0.96879 1.0089 1.6701 2 0 Median 1.4718 1.3852 NaN 1 0 Median 0.97127 1.1035 NaN 1 1 Median 0.35426 0.36279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23647000 11895000 11752000 16158000 8310400 7847600 3685000 1530700 2154300 3217700 1626400 1591300 586390 427450 158940 0 0 0 0 0 0 13996 3050 14566 71414;71415;71416;71417;71418 72412;72413;72414;72415;72416 72414 5 IAENLGDVQISDK ALQLRQEALEMSRNRIAENLGDVQISDKIT NRIAENLGDVQISDKITISKNFKENVIRPI R I A D K I 1 0 1 2 0 1 1 1 0 2 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1400.7147 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 526 538 CLPB Caseinolytic peptidase B protein homolog no no 2 6.3011E-11 131.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1535 0.98622 11.242 5 Median 0.92817 0.87044 NaN 1 0 Median 1.1535 0.98622 NaN 1 0 Median 0.90135 0.87475 NaN 1 1 Median 1.2618 1.0796 7.0906 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38595000 18449000 20146000 12974000 5586800 7387700 3902700 1700800 2201900 14598000 7840900 6756600 7120400 3320900 3799500 0 0 0 0 0 0 13997 1181 14567 71419;71420;71421;71422;71423 72417;72418;72419;72420;72421 72418 5 IAEQEHTQEDLQQLR SSRTDRDAWQDNALRIAEQEHTQEDLQQLR IAEQEHTQEDLQQLRSDLDAVSMKCDSFLH R I A L R S 1 1 0 1 0 4 3 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 15 0 1836.8966 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1086 1100 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 3.201E-14 172.1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.90292 0.86515 12.094 4 Median 0.8083 0.7845 NaN 1 0 Median 1.3069 1.0439 NaN 1 0 Median 0.84002 0.88535 NaN 1 0 Median 0.97052 0.84542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91079000 44042000 47037000 28508000 16344000 12164000 46170000 19574000 26596000 12736000 6297100 6438400 3665200 1825900 1839300 0 0 0 0 0 0 13998 1220 14568 71424;71425;71426;71427 72422;72423;72424;72425;72426;72427 72425 6 IAEQVASFQEEK ARAIMAQLPQEQKAKIAEQVASFQEEKSKL KAKIAEQVASFQEEKSKLDAEVSKWDDSGN K I A E K S 2 0 0 0 0 2 3 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 12 0 1377.6776 P35221;G3XAM7 P35221 684 695 CTNNA1 Catenin alpha-1 yes no 2 2.0731E-06 166.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 0.94792 0.84242 6.7185 7 Median 0.86896 0.8393 NaN 1 0 Median 0.98926 0.85468 2.044 2 0 Median 0.67248 0.7274 NaN 1 0 Median 0.97942 0.85223 4.096 2 1 Median 0.86966 0.88992 NaN 1 1 Median NaN NaN NaN 0 0 Median 71481000 38632000 32849000 15216000 7645000 7570800 10149000 4869100 5279900 24372000 14294000 10078000 12487000 6409200 6077900 9257100 5414300 3842800 0 0 0 13999 2232 14569 71428;71429;71430;71431;71432;71433;71434 72428;72429;72430;72431;72432;72433;72434 72428 7 IAESTEWQEK KEKLVKEIESLKSSKIAESTEWQEKHKELQ LKSSKIAESTEWQEKHKELQKEYEILLQSY K I A E K H 1 0 0 0 0 1 3 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 10 0 1219.5721 Q14789;E7EU81 Q14789 1598 1607 GOLGB1 Golgin subfamily B member 1 yes no 2 0.00072097 103.55 By MS/MS By MS/MS 1 1 1.0034 0.93681 11.843 2 Median 1.0278 1.0186 NaN 1 0 Median 0.97958 0.86155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11147000 5005700 6141400 2705400 1321500 1383900 8441600 3684200 4757500 0 0 0 0 0 0 0 0 0 0 0 0 14000 2900 14570 71435;71436 72435;72436 72436 2 IAETDFEKR QQEFKNANAVMEYEKIAETDFEKRDFRKVV VMEYEKIAETDFEKRDFRKVVFCMDRALEF K I A K R D 1 1 0 1 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 9 1 1107.556 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7ER44 Q99615 148 156 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0033914 79.474 By MS/MS By MS/MS By matching 1 1 1 1.0613 1.0676 55.692 3 Plateau 1.0613 1.0676 NaN 1 0 Median 1.0738 0.98416 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.4174 0.39168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7732500 3911500 3821000 4256400 2193700 2062700 3222800 1559400 1663400 0 0 0 253350 158410 94940 0 0 0 0 0 0 14001 3759 14571 71437;71438;71439 72437;72438;72439 72439 3 IAEVDASVVR LTYGRRIPLAEWESRIAEVDASVVREICSK EWESRIAEVDASVVREICSKYIYDQCPAVA R I A V R E 2 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 3 0 0 10 0 1057.5768 P31930 P31930 433 442 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 2.4396E-05 145.16 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.3346 1.1118 18.864 5 Median 1.1993 1.1118 NaN 1 0 Median 1.6937 1.447 19.83 2 0 Median 1.0504 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3346 1.1095 NaN 1 0 Median 139480000 58264000 81213000 74696000 32120000 42575000 49003000 18687000 30316000 13014000 6443100 6571200 0 0 0 0 0 0 2763700 1013800 1749900 14002 2205 14572 71440;71441;71442;71443;71444 72440;72441;72442;72443;72444;72445 72441 6 IAEVDCTAER EELSKKEFPGLAGVKIAEVDCTAERNICSK LAGVKIAEVDCTAERNICSKYSVRGYPTLL K I A E R N 2 1 0 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1162.5288 Q8NBS9 Q8NBS9 376 385 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.00033784 85.731 By MS/MS 1 1.1848 1.0171 NaN 1 Median NaN NaN NaN 0 0 Median 1.1848 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2541200 1204900 1336300 0 0 0 2541200 1204900 1336300 0 0 0 0 0 0 0 0 0 0 0 0 14003 3410 14573 71445 72446;72447 72447 2 IAEYAFK VVESLKIITKAKSLRIAEYAFKLAQESGRK ITKAKSLRIAEYAFKLAQESGRKKVTAVHK R I A F K L 2 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 840.43815 H7C1W2;E9PF84;G5E9Q7;E7EQB8;P51553;H0Y5Q7 H7C1W2 140 146 IDH3G Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 2 0.054459 50.966 By MS/MS 1 1.6101 1.3885 NaN 1 Median NaN NaN NaN 0 0 Median 1.6101 1.3885 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2155800 820350 1335400 0 0 0 2155800 820350 1335400 0 0 0 0 0 0 0 0 0 0 0 0 14004 877 14574 71446 72448 72448 1 IAFAITAIK HILRVLNTNIDGRRKIAFAITAIKGVGRRY IDGRRKIAFAITAIKGVGRRYAHVVLRKAD K I A I K G 3 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 1 0 0 0 0 0 9 0 946.58515 P62269;A0A0G2JQH2;Q5GGW2 P62269 26 34 RPS18 40S ribosomal protein S18 yes no 2 0.0027822 69.628 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 1 4 1 1.3938 1.2336 20.732 11 Median 1.2023 1.1459 9.2569 2 0 Median 1.2541 1.0743 NaN 1 0 Median 1.2199 1.1612 8.55 2 0 Median 1.6509 1.3613 NaN 1 0 Median 1.5185 1.6225 13.164 4 0 Median 1.4851 1.1775 NaN 1 0 Median 142130000 64509000 77622000 110320000 50367000 59958000 8539100 3732000 4807100 14277000 6908300 7369100 567460 205460 362000 7519600 2953700 4565900 902680 342920 559750 14005 2578 14575 71447;71448;71449;71450;71451;71452;71453;71454;71455;71456;71457 72449;72450;72451;72452;72453;72454;72455;72456;72457;72458;72459;72460 72450 12 IAFDAESDPSNAPGSGTEK PNDQAQRDIIFELRRIAFDAESDPSNAPGS AESDPSNAPGSGTEKRKAMYTKDYKMLGFT R I A E K R 3 0 1 2 0 0 2 2 0 1 0 1 0 1 2 3 1 0 0 0 0 0 19 0 1891.8436 Q5JVZ5;Q96JJ3;Q5JVZ8;H0YCM7 Q5JVZ5 320 338 ELMO2 Engulfment and cell motility protein 2 yes no 2 0.019294 35.006 By MS/MS 1 0.96615 0.83833 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96615 0.83833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1858900 856160 1002700 0 0 0 0 0 0 0 0 0 1858900 856160 1002700 0 0 0 0 0 0 14006 3058 14576 71458 72461 72461 1 IAFFSSR PVRVFMLHQDLRFPRIAFFSSRDIRTGEEL HQDLRFPRIAFFSSRDIRTGEELGFDYGDR R I A S R D 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 0 0 0 0 7 0 826.43374 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 1102 1108 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 0.014908 80.462 By MS/MS By MS/MS 1 3 1.0595 1.0796 18.768 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85345 0.93432 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1196 1.176 17.906 3 1 Median NaN NaN NaN 0 0 Median 9193500 4093100 5100500 0 0 0 0 0 0 2324600 1114800 1209900 0 0 0 6868900 2978300 3890600 0 0 0 14007 277 14577 71459;71460;71461;71462 72462;72463;72464 72463 3 IAFFSTR PVRVFMAHQDLRFPRIAFFSTRLIEAGEQL HQDLRFPRIAFFSTRLIEAGEQLGFDYGER R I A T R L 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 1 1 0 0 0 0 0 7 0 840.44939 Q9H9B1;A0A1B0GV09 Q9H9B1 1224 1230 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.016986 67.032 By MS/MS By MS/MS By matching 1 3 1 1.1671 1.1471 14.072 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1841 1.3027 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0107 1.0785 12.34 3 0 Median 1.5676 1.2295 NaN 1 0 Median 10518000 5294800 5223600 0 0 0 0 0 0 4313200 2129200 2184100 0 0 0 6041200 3100600 2940600 163960 65061 98895 14008 3997 14578 71463;71464;71465;71466;71467 72465;72466;72467 72466 3 IAFGGETDEATR LRHFKRILSLLEGQKIAFGGETDEATRYIA GQKIAFGGETDEATRYIAPTVLTDVDPKTK K I A T R Y 2 1 0 1 0 0 2 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 12 0 1265.5888 P51648;J3QRD1;I3L1M4;J3QS00 P51648 300 311 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 0.00061824 67.153 By MS/MS 1 1.2863 1.0822 NaN 1 Median NaN NaN NaN 0 0 Median 1.2863 1.0822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11266000 4829300 6437000 0 0 0 11266000 4829300 6437000 0 0 0 0 0 0 0 0 0 0 0 0 14009 1349 14579 71468 72468 72468 1 IAFGGHQR CGNALVCDNVEDARRIAFGGHQRHKTVALD NVEDARRIAFGGHQRHKTVALDGTLFQKSG R I A Q R H 1 1 0 0 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 8 0 884.46168 Q14683;G8JLG1 Q14683 628 635 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0055194 75.311 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 2 1.2158 1.1046 9.9301 7 Median NaN NaN NaN 0 0 Median 1.2867 1.1046 NaN 1 0 Median 0.9678 1.0512 NaN 1 0 Median 1.506 1.3131 NaN 1 0 Median 0.99046 1.0405 11.097 2 0 Median 1.2742 1.0597 6.9352 2 0 Median 11645000 5451700 6192900 0 0 0 1895700 811740 1084000 1500700 742800 757900 210280 96451 113830 6129800 2974200 3155500 1908100 826460 1081700 14010 2889 14580 71469;71470;71471;71472;71473;71474;71475 72469;72470;72471 72470 3 IAFIAWK LEELGFRSGAPMIKKIAFIAWKSLIDNFAL SGAPMIKKIAFIAWKSLIDNFALNPDILCS K I A W K S 2 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 0 1 0 0 0 0 7 0 847.49561 Q5UIP0;H7BZN3 Q5UIP0 292 298 RIF1 Telomere-associated protein RIF1 yes no 2 0.01784 64.563 By MS/MS 1 0.98502 1.0769 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98502 1.0769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2170600 1076400 1094200 0 0 0 0 0 0 2170600 1076400 1094200 0 0 0 0 0 0 0 0 0 14011 3109 14581 71476 72472;72473 72472 2 IAFIFNNLSQSNMTQK QTERIVEPPENIQEKIAFIFNNLSQSNMTQ AFIFNNLSQSNMTQKVEELKETVKEEFMPW K I A Q K V 1 0 3 0 0 2 0 0 0 2 1 1 1 2 0 2 1 0 0 0 0 0 16 0 1854.9298 A5YKK6;H3BVC9 A5YKK6 1099 1114 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 7.3017E-05 76.332 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1261 1.0884 10.975 4 Median 1.0887 1.0488 NaN 1 0 Median 1.1227 0.97335 NaN 1 0 Median 1.1295 1.2589 NaN 1 1 Median 1.2524 1.1296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10051000 4622100 5429300 6743800 3107200 3636600 698480 343730 354760 2455800 1089800 1366000 153300 81280 72023 0 0 0 0 0 0 14012 503 14582 71477;71478;71479;71480 72474;72475;72476 72474 3 IAFSCPQK QGVKGGVDHAAAFGRIAFSCPQKELPDLED HAAAFGRIAFSCPQKELPDLEDLMKRENQK R I A Q K E 1 0 0 0 1 1 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 949.46914 Q9HC38;F6TLX2;I3L3Q4 Q9HC38 217 224 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.011909 56.011 By MS/MS 1 1.3857 1.1743 NaN 1 Median NaN NaN NaN 0 0 Median 1.3857 1.1743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1220600 452320 768250 0 0 0 1220600 452320 768250 0 0 0 0 0 0 0 0 0 0 0 0 14013 4025 14583 71481 72477 72477 1 IAFSSTSLLK EEELFRQGELNKGRRIAFSSTSLLKMAPSA NKGRRIAFSSTSLLKMAPSAEERTTIHEMF R I A L K M 1 0 0 0 0 0 0 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 10 0 1065.607 Q9Y305;H7C5Q2 Q9Y305 241 250 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.00041856 99.802 By MS/MS By matching By MS/MS By matching By matching By matching 3 3 2 1 2 1 1.0094 1.0313 33.454 12 Median 0.99748 0.91877 8.1171 3 0 Median 1.4903 1.2722 23.891 3 0 Median 0.95212 0.98558 13.555 2 0 Median 1.6024 1.4353 NaN 1 0 Median 0.67624 0.69181 71.014 2 0 Median 1.6816 1.4127 NaN 1 0 Median 75956000 37122000 38834000 39854000 19929000 19925000 5878500 2477200 3401300 22420000 11237000 11183000 4870500 1910600 2959900 2664400 1480100 1184200 267940 87398 180550 14014 4400 14584 71482;71483;71484;71485;71486;71487;71488;71489;71490;71491;71492;71493 72478;72479;72480;72481 72480 4 IAFTEWIEPPKR SVYNFEGEDYREKQKIAFTEWIEPPKRERK KQKIAFTEWIEPPKRERKANYAVDAYFREA K I A K R E 1 1 0 0 0 0 2 0 0 2 0 1 0 1 2 0 1 1 0 0 0 0 12 1 1485.798 O60264 O60264 725 736 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 0.00015052 64.55 By MS/MS By matching By MS/MS By matching 3 1 3 1 0.78134 0.8479 23.048 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79995 0.90645 14.037 3 0 Plateau 1.1493 1.1045 NaN 1 0 Median 0.77678 0.85446 27.864 3 0 Plateau 0.90961 0.84139 NaN 1 0 Median 32396000 18938000 13459000 0 0 0 0 0 0 13868000 7864000 6003800 259710 109590 150120 18100000 10853000 7247400 168200 110980 57224 14015 1608 14585 71494;71495;71496;71497;71498;71499;71500;71501 72482;72483;72484;72485;72486;72487;72488;72489 72484 8 IAFWDDVYGFK ISLVAVSDVNKHADRIAFWDDVYGFKMSCM HADRIAFWDDVYGFKMSCMKKAVIPEAVVE R I A F K M 1 0 0 2 0 0 0 1 0 1 0 1 0 2 0 0 0 1 1 1 0 0 11 0 1359.6499 O60678 O60678 380 390 PRMT3 Protein arginine N-methyltransferase 3 yes yes 2 0.028804 31.934 By MS/MS By matching By matching By matching 1 1 1 1 1.4599 1.2808 17.416 4 Median 1.2905 1.249 NaN 1 0 Median 1.4675 1.285 NaN 1 0 Median 1.7979 1.7979 NaN 1 0 Median 1.4524 1.2767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898900 1264100 1634800 1476900 655840 821050 890210 395250 494960 432860 168300 264550 98975 44704 54271 0 0 0 0 0 0 14016 1625 14586 71502;71503;71504;71505 72490 72490 1 IAGAGLLFVGGGIGGTILYAK RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG LFVGGGIGGTILYAKWDSHFRESVEKTIPY K I A A K W 3 0 0 0 0 0 0 7 0 3 3 1 0 1 0 0 1 0 1 1 0 0 21 0 1947.1193 Q16891;B9A067;A0A087WYS0;D6RAW4 Q16891 46 66 IMMT MICOS complex subunit MIC60 yes no 2 0.038563 20.106 By MS/MS 1 1.4924 1.3477 NaN 1 Median NaN NaN NaN 0 0 Median 1.4924 1.3477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 733230 350650 382570 0 0 0 733230 350650 382570 0 0 0 0 0 0 0 0 0 0 0 0 14017 3001 14587 71506 72491 72491 1 IAGALGGLLTPLFLR PIGSGEDEVQQTAARIAGALGGLLTPLFLR IAGALGGLLTPLFLRGVLAYLIWWTAACQL R I A L R G 2 1 0 0 0 0 0 3 0 1 5 0 0 1 1 0 1 0 0 0 0 0 15 0 1510.9235 K7EPA3;Q9NX61 K7EPA3 409 423 TMEM161A Transmembrane protein 161A yes no 2 0.00030423 67.726 By MS/MS By matching 2 1 0.94267 0.93438 15.734 3 Median 0.9354 0.92986 0.68545 2 0 Median 1.4069 1.221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1462600 761070 701560 1290600 699440 591130 172060 61630 110430 0 0 0 0 0 0 0 0 0 0 0 0 14018 1392 14588 71507;71508;71509 72492;72493 72493 2 IAGDYVSEEVWYR VDYSWYVDTILNLIRIAGDYVSEEVWYRVL IRIAGDYVSEEVWYRVLQIVTNRDDVQGYA R I A Y R V 1 1 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 1 2 2 0 0 13 0 1585.7413 O94973;A0A0G2JS82;A0A0G2JQM1;O95782 O95782 452 464 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 3.2754E-05 91.937 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.3817 1.2733 19.878 4 Median 1.3717 1.3242 NaN 1 0 Median 1.3917 1.2242 NaN 1 0 Median 1.0524 1.1207 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.6663 1.7727 NaN 1 1 Median NaN NaN NaN 0 0 Median 16226000 6907100 9318900 7397400 3157800 4239600 246780 90094 156690 6669800 2990900 3678900 0 0 0 1911900 668210 1243700 0 0 0 14019 1793;1741 14589 71510;71511;71512;71513 72494;72495;72496;72497 72495 4 IAGFDER QYDGRGKPLPEYHVRIAGFDERVTVMASLR PLPEYHVRIAGFDERVTVMASLRRPKRIII R I A E R V 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 7 0 806.39227 P78527 P78527 3719 3725 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0081656 86.512 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.96666 0.99367 49.077 7 Median NaN NaN NaN 0 0 Median 1.5746 1.2592 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78458 0.6631 98.586 2 0 Median 0.93884 0.97183 3.1431 2 0 Median 1.1818 0.99586 37.615 2 0 Median 279820000 146270000 133550000 0 0 0 27825000 9932400 17893000 0 0 0 44144000 29648000 14496000 15928000 7861300 8066800 191920000 98825000 93095000 14020 2647 14590 71514;71515;71516;71517;71518;71519;71520 72498;72499;72500;72501;72502;72503;72504;72505;72506;72507;72508 72499 11 IAGHPLAQNER FIEERRQGLEQFINKIAGHPLAQNERCLHM FINKIAGHPLAQNERCLHMFLQEEAIDRNY K I A E R C 2 1 1 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1204.6313 A0A087X0R6;Q9UMY4 A0A087X0R6 130 140 SNX12 Sorting nexin-12 yes no 3 0.0086016 30.889 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1886 1.1051 13.878 6 Median 0.89054 0.87965 NaN 1 0 Median 1.1858 0.98591 NaN 1 0 Median 1.1596 1.1325 9.6797 2 0 Median 1.7662 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4646 1.1547 NaN 1 0 Median 3874100 1779400 2094700 930080 455910 474160 1224500 572820 651690 1573700 697390 876340 57927 16708 41219 0 0 0 87903 36579 51324 14021 112 14591 71521;71522;71523;71524;71525;71526 72509;72510;72511 72511 3 IAGKAEGEWFSRIDSR I A S R 2 2 0 1 0 0 2 2 0 2 0 1 0 1 0 2 0 1 0 0 0 0 16 2 1820.9169 REV__A0A0U1RR07 yes yes 3 0.057592 11.768 By matching By matching By matching By MS/MS 2 2 1 3 1.1453 1.1184 8.9893 8 Median NaN NaN NaN 0 0 Median 1.0082 1.0509 8.5929 2 0 Median NaN NaN NaN 0 0 Median 1.2542 1.1812 7.5075 2 0 Median 1.0497 1.1974 NaN 1 0 Median 1.1453 0.99366 8.0775 3 0 Plateau 96002000 45502000 50500000 0 0 0 1130500 547310 583180 0 0 0 4642500 1923100 2719400 87179000 41416000 45763000 3049300 1614900 1434300 + 14022 4510 14592 71527;71528;71529;71530;71531;71532;71533;71534 72512 72512 1 IAGMDPVVHSALQEER LNDVTHSESLIVAERIAGMDPVVHSALQEE AGMDPVVHSALQEERLLLVQTGSSSPCLDL R I A E R L 2 1 0 1 0 1 2 1 1 1 1 0 1 0 1 1 0 0 0 2 0 0 16 0 1750.8672 E9PHT6;A0A494C169;Q9NVE7 E9PHT6 633 648 PANK4 Pantothenate kinase 4 yes no 3 2.8224E-05 70.529 By MS/MS By matching 1 1 0.80715 0.74689 10.451 2 Median 0.84795 0.80417 NaN 1 0 Median 0.76832 0.69368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8089200 4632700 3456500 7123100 4016200 3106900 966090 616480 349610 0 0 0 0 0 0 0 0 0 0 0 0 14023 466 14593 71535;71536 72513;72514 72514 2 IAGPGLGSGVR FRVPVKDVVDPSKVKIAGPGLGSGVRARVL SKVKIAGPGLGSGVRARVLQSFTVDSSKAG K I A V R A 1 1 0 0 0 0 0 4 0 1 1 0 0 0 1 1 0 0 0 1 0 0 11 0 982.55598 O75369;E7EN95 O75369 1426 1436 FLNB Filamin-B yes no 2 2.5948E-08 138.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.98762 0.92038 8.9064 6 Median 0.91272 0.87638 3.6173 2 2 Median 1.1201 0.92405 17.973 2 1 Median 0.85587 0.94219 NaN 1 1 Median 1.0892 0.94836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108500000 53579000 54923000 20158000 10666000 9492100 80817000 38824000 41993000 5461500 2964900 2496700 2065500 1124500 941040 0 0 0 0 0 0 14024 1664 14594 71537;71538;71539;71540;71541;71542;71543 72515;72516;72517;72518;72519;72520;72521;72522 72516 8 IAGQISASVAQQR RQVKVLGWKDGESTKIAGQISASVAQQRNC TKIAGQISASVAQQRNCEAETLRVFRLITS K I A Q R N 3 1 0 0 0 3 0 1 0 2 0 0 0 0 0 2 0 0 0 1 0 0 13 0 1327.7208 O75592;A0A499FJI4;H7C3U4 O75592 3880 3892 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 yes no 2 0.00054412 81.865 By MS/MS 1 1.2475 1.2657 NaN 1 Median 1.2475 1.2657 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2511500 890630 1620900 2511500 890630 1620900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14025 477 14595 71544 72523 72523 1 IAGQVAAANK GGRKLTPQGQRDLDRIAGQVAAANKKH___ RDLDRIAGQVAAANKKH_____________ R I A N K K 4 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 10 0 941.52943 P39019;A0A075B6E2 P39019 134 143 RPS19 40S ribosomal protein S19 yes no 2 0.00040066 77.674 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.1985 1.0159 5.7776 6 Median NaN NaN NaN 0 0 Median 1.2029 1.0312 NaN 1 0 Median 1.1535 1.1395 NaN 1 0 Median 1.1941 0.98453 3.6694 3 0 Median NaN NaN NaN 0 0 Median 1.2167 1.0008 NaN 1 0 Median 11799000 5285500 6513500 0 0 0 6928000 3110500 3817500 2510400 1111400 1399000 2280400 1035800 1244700 0 0 0 80183 27814 52368 14026 2280 14596 71545;71546;71547;71548;71549;71550 72524;72525;72526;72527;72528;72529;72530;72531 72526 8 IAGYVTHLMK CEEIAIIPSKKLRNKIAGYVTHLMKRIQRG KLRNKIAGYVTHLMKRIQRGPVRGISIKLQ K I A M K R 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 0 1 1 0 0 10 0 1131.6111 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 499 508 RPS17 40S ribosomal protein S17 yes no 2 0.00036244 112.41 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 3 1 1 3 1.2322 1.1125 25.775 15 Median 1.1398 1.0608 0.80392 3 0 Median 1.2178 1.0153 17.099 4 0 Median 1.2625 1.1858 15.897 3 0 Median 1.3421 1.1125 NaN 1 0 Median 1.525 1.6369 NaN 1 0 Median 1.883 1.5033 41.631 3 1 Median 987080000 444450000 542630000 620480000 281880000 338600000 299450000 135500000 163950000 37438000 15985000 21453000 5199900 2251700 2948200 2281700 1162600 1119000 22226000 7664600 14561000 14027 1214 14597;14598 71551;71552;71553;71554;71555;71556;71557;71558;71559;71560;71561;71562;71563;71564;71565 72532;72533;72534;72535;72536;72537;72538;72539;72540;72541;72542;72543;72544;72545;72546;72547;72548;72549;72550;72551;72552;72553;72554;72555 72549 410 24 IAGYVTHLMKR CEEIAIIPSKKLRNKIAGYVTHLMKRIQRG LRNKIAGYVTHLMKRIQRGPVRGISIKLQE K I A K R I 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 0 1 1 0 0 11 1 1287.7122 H3BNC9;P08708;H0YN88;A0A075B716 H3BNC9 499 509 RPS17 40S ribosomal protein S17 yes no 3 3.3014E-05 85.377 By matching By MS/MS 1 1 0.9339 0.87345 10.489 2 Median 0.94873 0.94069 NaN 1 0 Median 0.9193 0.81101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4112300 1910100 2202100 2700600 1278200 1422400 1411700 631950 779750 0 0 0 0 0 0 0 0 0 0 0 0 14028 1214 14599 71566;71567 72556;72557 72557 2 IAHFLDR ______________________________ AEYDLTTRIAHFLDRHLVFPLLEFLSVKEI R I A D R H 1 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 870.47119 P60228;H0YBR5;E5RHS5;E5RIP5;E5RJ25;E5RII3 P60228 10 16 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.028199 50.966 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2175 1.0898 16.484 5 Median 1.3936 1.3677 NaN 1 1 Median 1.142 0.98074 14.917 2 0 Median 1.2175 1.2142 NaN 1 0 Median 1.1971 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16025000 7168000 8857200 5070700 2084500 2986200 5718800 2499400 3219400 1390700 708870 681870 3845000 1875300 1969800 0 0 0 0 0 0 14029 2524 14600 71568;71569;71570;71571;71572 72558;72559;72560;72561;72562 72561 5 IAHIMGPPDR VRIQFKQDDGTGPEKIAHIMGPPDRCEHAA TGPEKIAHIMGPPDRCEHAARIINDLLQSL K I A D R C 1 1 0 1 0 0 0 1 1 2 0 0 1 0 2 0 0 0 0 0 0 0 10 0 1105.5702 Q92945;A0A087WTP3 Q92945 369 378 KHSRP Far upstream element-binding protein 2 yes no 2 0.00028636 126.41 By matching By MS/MS By MS/MS 1 1 2 0.87328 0.75264 16.632 4 Median NaN NaN NaN 0 0 Median 1.0982 0.9952 NaN 1 0 Median 0.63461 0.67586 NaN 1 0 Median 0.87328 0.75264 2.727 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25185000 13679000 11506000 0 0 0 892300 420470 471820 6583300 4157800 2425500 17709000 9100300 8608900 0 0 0 0 0 0 14030 3568 14601;14602 71573;71574;71575;71576 72563;72564;72565;72566;72567;72568;72569 72567 1778 7 IAHIPLYFVNAQFPR FNKGALLSVGWSTGRIAHIPLYFVNAQFPR IAHIPLYFVNAQFPRFSPVLGRAQEPPAGG R I A P R F 2 1 1 0 0 1 0 0 1 2 1 0 0 2 2 0 0 0 1 1 0 0 15 0 1784.9726 Q9NRG9;F8VZ44 Q9NRG9 479 493 AAAS Aladin yes no 3 0.00034935 41.092 By MS/MS By MS/MS 2 1 0.81823 0.83658 15.255 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75152 0.76509 12.632 2 0 Median 1.1049 0.94784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9609100 4906900 4702300 0 0 0 0 0 0 6761500 3630100 3131300 2847600 1276700 1570900 0 0 0 0 0 0 14031 4082 14603 71577;71578;71579 72570;72571;72572;72573;72574 72571 5 IAHLAGVKDQLTK KEEKTRKAIVAAKSKIAHLAGVKDQLTKEN SKIAHLAGVKDQLTKENEELKQRNGALDQQ K I A T K E 2 0 0 1 0 1 0 1 1 1 2 2 0 0 0 0 1 0 0 1 0 0 13 1 1392.8089 P12270 P12270 1564 1576 TPR Nucleoprotein TPR yes yes 3 1.6705E-06 97.463 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 0.9687 1.1223 17.411 7 Median 0.82461 0.89474 NaN 1 0 Median 1.1867 1.133 NaN 1 0 Median 0.95568 1.0961 3.3384 2 0 Median 1.5863 1.4827 NaN 1 0 Median 0.90782 0.94868 NaN 1 0 Median 1.4608 1.3036 NaN 1 0 Median 38700000 17888000 20812000 3850900 1877900 1973000 11378000 4758600 6619400 19704000 9742000 9962000 1166000 437060 728940 1175100 471360 703720 1426100 601290 824770 14032 1978 14604 71580;71581;71582;71583;71584;71585;71586 72575;72576;72577;72578;72579;72580;72581;72582 72578 8 IAHLAQIEDDR TLPNYTKGSGDVLGKIAHLAQIEDDRAAMV VLGKIAHLAQIEDDRAAMVISWHLASDMDC K I A D R A 2 1 0 2 0 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1279.6521 A6NHR9;J3KTL8;A0A2R8YCU7 A6NHR9 1726 1736 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2;3 5.3666E-05 97.813 By MS/MS By MS/MS By MS/MS 2 2 1 1.164 1.0191 3.2068 4 Median NaN NaN NaN 0 0 Median 1.2355 1.039 3.3056 2 0 Median 0.93878 1.0232 NaN 1 0 Median 1.1154 0.98377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37067000 17784000 19283000 0 0 0 6383200 2805500 3577700 21842000 11053000 10789000 8841800 3925300 4916500 0 0 0 0 0 0 14033 518 14605 71587;71588;71589;71590;71591 72583;72584;72585;72586;72587 72584 5 IAIIGAGIGGTSAAYYLR CGCPEGAELRAPPDKIAIIGAGIGGTSAAY IGAGIGGTSAAYYLRQKFGKDVKIDLFERE K I A L R Q 4 1 0 0 0 0 0 4 0 4 1 0 0 0 0 1 1 0 2 0 0 0 18 0 1765.9727 Q9UHG3;F8W8W4 Q9UHG3 37 54 PCYOX1 Prenylcysteine oxidase 1 yes no 2 2.0376E-06 82.362 By MS/MS By matching By matching By matching 5 1 1 1 1.1883 1.1426 23.146 7 Median 1.1255 1.0971 16.455 4 0 Median 1.2474 1.0655 NaN 1 0 Median 1.674 1.7431 NaN 1 0 Median 1.5366 1.3559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9740300 4684200 5056000 8510700 4171300 4339400 348500 155700 192800 727030 281930 445090 154100 75321 78778 0 0 0 0 0 0 14034 4279 14606 71592;71593;71594;71595;71596;71597;71598;71599 72588;72589;72590;72591;72592 72590 5 IAILGYR ______________________________ MPQSKSRKIAILGYRSVGKSSLTIQFVEGQ K I A Y R S 1 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 7 0 804.48577 Q15382;F8WBL3 Q15382 9 15 RHEB GTP-binding protein Rheb yes no 2 0.0051613 98.03 By MS/MS By MS/MS By matching 1 4 1 1.3164 1.1472 17.107 6 Median 1.1239 1.1124 NaN 1 0 Median 1.3867 1.1956 18.862 4 0 Median 1.0767 1.0185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9898400 4494300 5404000 5005200 2259800 2745400 2472000 1038000 1434000 2421200 1196500 1224700 0 0 0 0 0 0 0 0 0 14035 2943 14607 71600;71601;71602;71603;71604;71605 72593;72594;72595 72593 3 IAIPDASK IEDLIKYLDPEYIDRIAIPDASKLQFILAE DPEYIDRIAIPDASKLQFILAEEQFILSQV R I A S K L 2 0 0 1 0 0 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 0 8 0 813.45962 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 76 83 DCTN3 Dynactin subunit 3 yes no 2 0.017569 48.561 By MS/MS 1 1.077 0.93014 NaN 1 Median NaN NaN NaN 0 0 Median 1.077 0.93014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2086200 1083300 1003000 0 0 0 2086200 1083300 1003000 0 0 0 0 0 0 0 0 0 0 0 0 14036 1708 14608 71606 72596;72597 72596 2 IAIPGLAGAGNSVLLVSNLNPER LAIPSAAAAAAAAGRIAIPGLAGAGNSVLL AGNSVLLVSNLNPERVTPQSLFILFGVYGD R I A E R V 3 1 3 0 0 0 1 3 0 2 4 0 0 0 2 2 0 0 0 2 0 0 23 0 2274.2696 A0A0U1RRM4;P26599;A6NLN1;K7EK45 A0A0U1RRM4 383 405 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2;3 2.5589E-135 272.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 7 7 3 5 0.79252 0.7355 65.518 31 Median 0.84744 0.82027 11.684 4 0 Median 0.84842 0.7355 9.0632 5 0 Median 0.68198 0.6622 38.545 7 1 Median 0.91675 0.78569 135.52 7 1 Median 0.73982 0.73659 6.2959 3 0 Plateau 0.88173 0.71713 12.248 5 0 Median 644400000 374730000 269660000 24557000 13081000 11476000 10515000 5487900 5026600 541520000 315900000 225610000 35652000 22532000 13120000 28708000 15767000 12941000 3448600 1962700 1485900 14037 312 14609 71607;71608;71609;71610;71611;71612;71613;71614;71615;71616;71617;71618;71619;71620;71621;71622;71623;71624;71625;71626;71627;71628;71629;71630;71631;71632;71633;71634;71635;71636;71637 72598;72599;72600;72601;72602;72603;72604;72605;72606;72607;72608;72609;72610;72611;72612;72613;72614;72615;72616;72617;72618;72619;72620;72621;72622;72623;72624;72625;72626;72627;72628;72629;72630;72631;72632;72633;72634;72635;72636;72637;72638 72614 41 IAIVNHDK ______________________________ MADKLTRIAIVNHDKCKPKKCRQECKKSCP R I A D K C 1 0 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 1 0 0 8 0 908.50797 P61221;D6R9I9;D6RGF4 P61221 8 15 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.01208 55.676 By matching By MS/MS 1 1 1.1032 1.009 3.8326 2 Median 1.0691 1.0367 NaN 1 0 Median 1.1384 0.98199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3181500 1545400 1636100 654230 295870 358360 2527300 1249500 1277800 0 0 0 0 0 0 0 0 0 0 0 0 14038 2550 14610 71638;71639 72639 72639 1 IAIWTTECENR DVCGAVVNVRAKGDKIAIWTTECENREAVT KGDKIAIWTTECENREAVTHIGRVYKERLG K I A N R E 1 1 1 0 1 0 2 0 0 2 0 0 0 0 0 0 2 1 0 0 0 0 11 0 1391.6503 D6RBW1;P06730 D6RBW1 191 201 EIF4E Eukaryotic translation initiation factor 4E yes no 2 0.0013 59.8 By MS/MS 1 1.3845 1.1736 NaN 1 Median NaN NaN NaN 0 0 Median 1.3845 1.1736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2588300 1091000 1497200 0 0 0 2588300 1091000 1497200 0 0 0 0 0 0 0 0 0 0 0 0 14039 818 14611 71640 72640;72641 72641 2 IAIYELLFK ______________________________ MPKKNRIAIYELLFKEGVMVAKKDVHMPKH R I A F K E 1 0 0 0 0 0 1 0 0 2 2 1 0 1 0 0 0 0 1 0 0 0 9 0 1108.6532 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;A0A1W2PQS6 P46783 9 17 RPS10 40S ribosomal protein S10 no no 2 0.0014358 81.548 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 3 1.2737 1.0952 9.5789 9 Median 1.1915 1.1359 8.6694 2 0 Median 1.3978 1.1914 18.637 2 0 Median 1.2715 1.2028 NaN 1 0 Median 1.3149 1.0885 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2925 1.0952 9.9966 3 0 Median 74223000 33779000 40443000 43200000 20182000 23018000 18581000 8407000 10174000 4701700 2002600 2699100 1835200 767440 1067700 0 0 0 5905400 2420200 3485200 14040 2346;345 14612 71641;71642;71643;71644;71645;71646;71647;71648;71649 72642;72643;72644;72645 72644 4 IAIYLSK FMVINNDDTESAEMKIAIYLSKSGICSLHP DTESAEMKIAIYLSKSGICSLHPLLRGWEE K I A S K S 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 7 0 806.49019 Q9H583;Q5T3Q7 Q9H583 621 627 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.029709 50.127 By matching By matching By matching By MS/MS 1 1 1 1 1.2009 1.1518 30.494 4 Median NaN NaN NaN 0 0 Median 1.2526 1.0919 NaN 1 0 Median 1.5573 1.7277 NaN 1 0 Median 0.91566 0.82643 NaN 1 0 Median 1.1513 1.215 NaN 1 0 Median NaN NaN NaN 0 0 Median 8140700 3531700 4609000 0 0 0 3675300 1551200 2124100 1356300 485550 870710 454650 218110 236540 2654400 1276800 1377700 0 0 0 14041 3086 14613 71650;71651;71652;71653 72646 72646 1 IAKMEKINE ASALLPKRAMQFGSRIAKMEKINE______ MQFGSRIAKMEKINE_______________ R I A N E - 1 0 1 0 0 0 2 0 0 2 0 2 1 0 0 0 0 0 0 0 0 0 9 2 1074.5743 C9IYZ1 C9IYZ1 610 618 ASNSD1 yes yes 2 0.024276 58.917 By MS/MS 1 0.11646 0.10798 NaN 1 Median NaN NaN NaN 0 0 Median 0.11646 0.10798 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10346000 7877700 2468000 0 0 0 10346000 7877700 2468000 0 0 0 0 0 0 0 0 0 0 0 0 14042 662 14614 71654 72647 72647 242 1 IAKPLSSLTPLIAAAK KRGSAKELLQHQFLKIAKPLSSLTPLIAAA AKPLSSLTPLIAAAKEATKNNH________ K I A A K E 4 0 0 0 0 0 0 0 0 2 3 2 0 0 2 2 1 0 0 0 0 0 16 1 1592.9865 Q13153 Q13153 523 538 PAK1 Serine/threonine-protein kinase PAK 1 yes yes 3 0.065795 10.281 By MS/MS By matching 1 1 0.87272 0.82705 34.309 2 Median 0.68231 0.64889 NaN 1 0 Median 1.1163 1.0541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2931800 1603700 1328100 2293300 1324900 968410 638500 278800 359710 0 0 0 0 0 0 0 0 0 0 0 0 14043 2791 14615 71655;71656 72648 72648 1 IALALTAISLGTARPPPSMSAAGLAAR DHQRTSVPENHAQSRIALALTAISLGTARP ARPPPSMSAAGLAARMSQVPAPVPLMSLRT R I A A R M 8 2 0 0 0 0 0 2 0 2 4 0 1 0 3 3 2 0 0 0 0 0 27 1 2576.4472 Q9UQ35 Q9UQ35 2181 2207 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 8.4471E-06 43.888 By MS/MS 2 0.68993 0.74976 9.2513 2 Median 0.68993 0.74976 9.2513 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3816300 2271200 1545100 3816300 2271200 1545100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14044 4359 14616 71657;71658 72649;72650 72649 2 IALDFQR MLITILGTVKPNANRIALDFQRGNDVAFHF TVKPNANRIALDFQRGNDVAFHFNPRFNEN R I A Q R G 1 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 861.47085 P17931;G3V3R6 P17931 145 151 LGALS3 Galectin-3;Galectin yes no 2 0.01522 72.138 By MS/MS By MS/MS By MS/MS 1 2 1 1.2 1.1365 7.8658 4 Median 1.1905 1.1104 NaN 1 0 Median 1.277 1.0729 11.439 2 0 Median 1.2095 1.1745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175790000 82327000 93466000 108120000 51717000 56400000 36286000 16219000 20067000 31389000 14391000 16998000 0 0 0 0 0 0 0 0 0 14045 2049 14617 71659;71660;71661;71662 72651;72652;72653;72654;72655 72651 5 IALHTALNNPYYYLK SAAHALREHLNAAPRIALHTALNNPYYYLK IALHTALNNPYYYLKNEALKSEEGCIPNIA R I A L K N 2 0 2 0 0 0 0 0 1 1 3 1 0 0 1 0 1 0 3 0 0 0 15 0 1792.9512 Q9UBD5 Q9UBD5 597 611 ORC3 Origin recognition complex subunit 3 yes yes 3 0.00010039 61.423 By MS/MS By matching By matching By matching 1 1 1 1 0.9102 0.84553 23.405 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84012 0.83375 NaN 1 0 Median 0.98612 0.85748 NaN 1 0 Median 0.75315 0.77249 NaN 1 0 Median 1.5104 1.2993 NaN 1 0 Median 34318000 18217000 16101000 0 0 0 0 0 0 32239000 17114000 15125000 862930 401180 461750 1084200 664860 419350 132300 37497 94806 14046 4236 14618 71663;71664;71665;71666 72656;72657 72656 2 IALLEEAK NQEQLAAELAEFTAKIALLEEAKKKKEEEA LAEFTAKIALLEEAKKKKEEEATEWQHKAF K I A A K K 2 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 885.51713 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 428 435 RDX Radixin yes no 2 0.0022957 111.01 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2171 1.0907 26.102 5 Median 0.97845 0.89291 NaN 1 0 Median 1.4054 1.2139 23.777 2 1 Median 1.0885 1.0907 NaN 1 0 Median 1.9561 1.6951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41289000 18774000 22515000 9320600 4582500 4738100 8915000 4291200 4623700 18948000 8479000 10469000 4105300 1421600 2683700 0 0 0 0 0 0 14047 2235 14619 71667;71668;71669;71670;71671 72658;72659;72660;72661;72662;72663;72664;72665 72660 8 IALLEEAKK NQEQLAAELAEFTAKIALLEEAKKKKEEEA AEFTAKIALLEEAKKKKEEEATEWQHKAFA K I A K K K 2 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1013.6121 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 428 436 RDX Radixin yes no 2 0.00049356 94.302 By MS/MS By MS/MS By MS/MS 1 1 1 0.8122 0.91231 22.02 3 Median 1.0205 1.0539 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8122 0.91231 NaN 1 1 Median 0.70002 0.68385 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14286000 7567300 6718500 3131800 1508300 1623400 0 0 0 5965800 3438900 2526800 5188200 2620000 2568200 0 0 0 0 0 0 14048 2235 14620 71672;71673;71674 72666;72667;72668 72667 3 IALLEEARR SQEQLAAELAEYTAKIALLEEARRRKEDEV AEYTAKIALLEEARRRKEDEVEEWQHRAKE K I A R R R 2 2 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1069.6244 P15311;E7EQR4 P15311 428 436 EZR Ezrin yes no 2 7.0294E-07 163.77 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.3669 1.3835 12.714 5 Median 1.2181 1.2489 2.3136 2 2 Median NaN NaN NaN 0 0 Median 1.3669 1.5253 NaN 1 0 Median 1.5614 1.3835 NaN 1 0 Median 1.535 1.6678 NaN 1 0 Median NaN NaN NaN 0 0 Median 37099000 16207000 20893000 20701000 9365600 11335000 0 0 0 13229000 5711100 7518200 863830 307770 556060 2305700 822460 1483300 0 0 0 14049 879 14621 71675;71676;71677;71678;71679 72669;72670;72671;72672 72672 4 IALLNVELELK YAGFEMQPKKYHNPKIALLNVELELKAEKD HNPKIALLNVELELKAEKDNAEIRVHTVED K I A L K A 1 0 1 0 0 0 2 0 0 1 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1253.7595 Q99832 Q99832 237 247 CCT7 T-complex protein 1 subunit eta yes yes 2 0.0039952 48.796 By matching By MS/MS 1 1 0.99828 0.9012 2.8215 2 Median 0.91093 0.8834 NaN 1 0 Median 1.094 0.91936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8865100 4185900 4679100 780900 432500 348400 8084200 3753400 4330700 0 0 0 0 0 0 0 0 0 0 0 0 14050 3771 14622 71680;71681 72673;72674 72673 2 IALLPLLQAETDR NRERRRLQIEDFEARIALLPLLQAETDRRT ARIALLPLLQAETDRRTLQMLRENLEEEAI R I A D R R 2 1 0 1 0 1 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 13 0 1451.8348 Q9P0J0;B4DEZ3;K7EJE1;E7ENQ6;U3KQP3 Q9P0J0 69 81 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 2 0.026015 27.742 By matching By matching By MS/MS By matching 1 1 1 1 0.94559 0.81838 23.133 4 Median 0.81152 0.79953 NaN 1 0 Median 1.4888 1.2746 NaN 1 0 Median 0.76896 0.78045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1018 0.83767 NaN 1 0 Median 2784800 1505200 1279500 620330 349160 271160 137710 40829 96878 1077300 606970 470340 0 0 0 0 0 0 949420 508260 441150 14051 4203 14623 71682;71683;71684;71685 72675 72675 1 IALLPLLQAETDRR NRERRRLQIEDFEARIALLPLLQAETDRRT RIALLPLLQAETDRRTLQMLRENLEEEAII R I A R R T 2 2 0 1 0 1 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 14 1 1607.9359 Q9P0J0;B4DEZ3;K7EJE1;E7ENQ6;U3KQP3 Q9P0J0 69 82 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 3 0.020178 21.06 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.99568 0.94422 28.014 4 Median 0.84353 0.88417 NaN 1 0 Median 1.6711 1.5287 NaN 1 0 Median 0.74892 0.81331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1753 1.0084 NaN 1 0 Median 11759000 5960400 5798400 2855100 1511700 1343400 144100 48902 95197 6375700 3665300 2710400 0 0 0 0 0 0 2383900 734450 1649400 14052 4203 14624 71686;71687;71688;71689 72676;72677;72678;72679;72680 72679 5 IALLQSLLDDANLR NKMLKLNQEGSDNEKIALLQSLLDDANLRK KIALLQSLLDDANLRKNELETENRLVNQRL K I A L R K 2 1 1 2 0 1 0 0 0 1 5 0 0 0 0 1 0 0 0 0 0 0 14 0 1553.8777 Q86VS8;H0YE69 Q86VS8 489 502 HOOK3 Protein Hook homolog 3 yes no 2 3.0062E-06 105.86 By MS/MS 1 1.3772 1.1933 NaN 1 Median NaN NaN NaN 0 0 Median 1.3772 1.1933 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3864700 1627100 2237600 0 0 0 3864700 1627100 2237600 0 0 0 0 0 0 0 0 0 0 0 0 14053 3289 14625 71690 72681 72681 1 IALQFPYR KMKAINSLGAGIIEKIALQFPYRFWDSKVQ GAGIIEKIALQFPYRFWDSKVQGADFFGHV K I A Y R F 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 8 0 1006.56 H0Y6H0;Q8NB78 H0Y6H0 663 670 KDM1B Lysine-specific histone demethylase 1B yes no 2 0.011113 57.559 By MS/MS 1 1.3706 1.4662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3706 1.4662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2341000 868530 1472500 0 0 0 0 0 0 2341000 868530 1472500 0 0 0 0 0 0 0 0 0 14054 1155 14626 71691 72682 72682 1 IALSPITK GWACLVCKEKLIIWKIALSPITKLSVCKEL EKLIIWKIALSPITKLSVCKELQLPPSDFH K I A T K L 1 0 0 0 0 0 0 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 8 0 841.5273 Q8WUM0 Q8WUM0 128 135 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.0046832 86.833 By MS/MS By MS/MS By matching 1 1 2 1.2044 1.0423 37.263 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94293 1.0063 NaN 1 1 Median 1.123 0.96446 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7857 1.5155 47.976 2 0 Median 19450000 8327700 11122000 0 0 0 0 0 0 15118000 6560700 8557000 3453300 1450900 2002400 0 0 0 879020 316100 562920 14055 3492 14627 71692;71693;71694;71695 72683;72684;72685 72683 3 IALTDNALIAR ELIYKRGYGKINKKRIALTDNALIARSLGK NKKRIALTDNALIARSLGKYGIICMEDLIH R I A A R S 3 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1169.6768 P18124;A8MUD9 P18124 167 177 RPL7 60S ribosomal protein L7 yes no 2 1.7759E-06 163.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 2 2 8 8 1.2444 1.1742 20.197 32 Median 1.2532 1.2317 16.566 6 0 Median 1.1296 0.94937 4.9484 6 0 Median 1.1325 1.0932 5.4084 2 0 Median 1.3061 1.0882 4.3705 2 0 Median 1.246 1.2603 13.518 8 0 Median 1.5842 1.2797 27.805 8 0 Median 2196400000 988950000 1207400000 1071700000 486760000 584950000 483040000 216050000 266990000 73374000 33542000 39832000 41113000 17087000 24025000 466360000 210440000 255920000 60809000 25083000 35727000 14056 2056 14628 71696;71697;71698;71699;71700;71701;71702;71703;71704;71705;71706;71707;71708;71709;71710;71711;71712;71713;71714;71715;71716;71717;71718;71719;71720;71721;71722;71723;71724;71725;71726;71727 72686;72687;72688;72689;72690;72691;72692;72693;72694;72695;72696;72697;72698;72699;72700;72701;72702;72703;72704;72705;72706;72707;72708;72709;72710;72711;72712;72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724;72725;72726;72727;72728;72729;72730;72731;72732 72690 47 IALTGGAALVADYGHDGTK VCPDAGVIIEELSQRIALTGGAALVADYGH GGAALVADYGHDGTKTD_____________ R I A T K T 4 0 0 2 0 0 0 4 1 1 2 1 0 0 0 0 2 0 1 1 0 0 19 0 1828.9319 C9JS27;Q7L592;C9J236 C9JS27 247 265 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 3 0.00054293 31.753 By matching By MS/MS 1 1 0.86443 0.85131 13.797 2 Median 0.82461 0.77218 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90616 0.93855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12687000 6379300 6308200 3436800 2184400 1252400 0 0 0 9250700 4194900 5055800 0 0 0 0 0 0 0 0 0 14057 721 14629 71728;71729 72733;72734 72734 2 IALTQSAANVK GPANTHLKSENDKLKIALTQSAANVKKWEI DKLKIALTQSAANVKKWEIELQTLRESNAR K I A V K K 3 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1114.6346 Q9NSB8;H0YNR9 Q9NSB8 171 181 HOMER2 Homer protein homolog 2 yes no 2 0.0054074 46.158 By MS/MS By MS/MS 1 1 1.0616 1.0144 41.397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2552 1.3594 NaN 1 0 Median 0.8979 0.75699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036600 1363300 2673300 0 0 0 0 0 0 3046900 905110 2141800 989700 458170 531530 0 0 0 0 0 0 14058 4100 14630 71730;71731 72735;72736 72735 2 IALYETPTGWK MPTSGALDRVASATKIALYETPTGWKFFGN SATKIALYETPTGWKFFGNLMDASKLSLCG K I A W K F 1 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 2 1 1 0 0 0 11 0 1277.6656 P36871;A0A3B3ITK7 P36871 350 360 PGM1 Phosphoglucomutase-1 yes no 2 0.00011486 131.44 By MS/MS By MS/MS By matching 1 1 1 1.1986 1.012 39.434 3 Median 1.0068 0.93764 NaN 1 0 Median 1.1986 1.012 NaN 1 1 Median 1.8676 1.9224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38165000 18908000 19257000 29293000 15152000 14141000 6444200 2802400 3641900 2427800 953300 1474500 0 0 0 0 0 0 0 0 0 14059 2262 14631 71732;71733;71734 72737;72738;72739 72738 3 IALYGLGSIPDER KIDISPVLLQKGSTKIALYGLGSIPDERLY TKIALYGLGSIPDERLYRMFVNKKVTMLRP K I A E R L 1 1 0 1 0 0 1 2 0 2 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1402.7456 P49959;F8W7U8;F5GXT0 P49959 176 188 MRE11A Double-strand break repair protein MRE11A yes no 2 3.4687E-05 91.549 By matching By MS/MS By MS/MS By MS/MS 1 2 3 1 1.1077 1.0019 21.246 7 Median NaN NaN NaN 0 0 Median 0.84439 0.7314 NaN 1 0 Median 1.053 1.0862 11.432 2 0 Median 1.1771 0.98331 18.957 3 0 Median 1.2551 1.3036 NaN 1 0 Median NaN NaN NaN 0 0 Median 96691000 39792000 56899000 0 0 0 4678300 2301900 2376300 76706000 30767000 45939000 9441900 4120000 5322000 5865300 2603200 3262100 0 0 0 14060 2407 14632 71735;71736;71737;71738;71739;71740;71741 72740;72741;72742;72743;72744;72745;72746;72747;72748;72749;72750;72751 72744 12 IAMENDDGRTEEEK QLAREIESSPQYRLRIAMENDDGRTEEEKH RIAMENDDGRTEEEKHSAVQRQGSGRESPS R I A E K H 1 1 1 2 0 0 4 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 14 1 1635.7046 Q8WWM7;H3BUF6;H3BSK9 Q8WWM7 313 326 ATXN2L Ataxin-2-like protein yes no 3 3.5417E-06 89.629 By MS/MS By matching 1 1 0.88185 0.84032 21.129 2 Median NaN NaN NaN 0 0 Median 1.0327 0.97573 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75306 0.7237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3029300 1525300 1504000 0 0 0 2666600 1319800 1346800 0 0 0 362670 205470 157210 0 0 0 0 0 0 14061 3511 14633 71742;71743 72752;72753 72752 2 IAMENDDGRTEEEKHSAVQR QLAREIESSPQYRLRIAMENDDGRTEEEKH DDGRTEEEKHSAVQRQGSGRESPSLASREG R I A Q R Q 2 2 1 2 0 1 4 1 1 1 0 1 1 0 0 1 1 0 0 1 0 0 20 2 2314.0608 Q8WWM7;H3BUF6;H3BSK9 Q8WWM7 313 332 ATXN2L Ataxin-2-like protein yes no 4 0.065169 7.9922 By MS/MS 1 0.94922 1.0224 NaN 1 Median 0.94922 1.0224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1684800 733500 951250 1684800 733500 951250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14062 3511 14634 71744 72754 72754 1 IAMQTLDMGR IPKDSILGEPGMGFKIAMQTLDMGRIGIAS GMGFKIAMQTLDMGRIGIASQALGIAQTAL K I A G R I 1 1 0 1 0 1 0 1 0 1 1 0 2 0 0 0 1 0 0 0 0 0 10 0 1134.5525 P16219;E9PE82 P16219 263 272 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0066637 63.216 By MS/MS 1 0.52349 0.51987 NaN 1 Median 0.52349 0.51987 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7438500 4804700 2633800 7438500 4804700 2633800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14063 2026 14635 71745 72755 72755 1 IANAYIIK ICLSDVGDYEGIKAKIANAYIIKEHFEKAI YEGIKAKIANAYIIKEHFEKAIELNPKDAT K I A I K E 2 0 1 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 0 8 0 904.5382 H0YB83;E5RH53;Q96DB5;H0YC67;H0YB03 H0YB83 130 137 RMDN1 Regulator of microtubule dynamics protein 1 yes no 2 0.0084743 62.717 By MS/MS By matching By matching By matching 1 1 1 1 1.3622 1.2293 34.603 4 Median 1.0085 0.9366 NaN 1 0 Median 1.3737 1.1742 NaN 1 0 Median 1.3507 1.287 NaN 1 0 Median 2.581 2.126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9922800 4251400 5671400 5434400 2485100 2949300 699060 321120 377950 3335300 1305000 2030400 454000 140230 313770 0 0 0 0 0 0 14064 845 14636 71746;71747;71748;71749 72756;72757 72756 2 IANDNSLNHEYLPILGLAEFR CHPWVLPVVKKVEQKIANDNSLNHEYLPIL LNHEYLPILGLAEFRSCASRLALGDDSPAL K I A F R S 2 1 3 1 0 0 2 1 1 2 4 0 0 1 1 1 0 0 1 0 0 0 21 0 2398.2281 P17174 P17174 61 81 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 3 6.0236E-09 54.271 By MS/MS By MS/MS By MS/MS 2 2 2 0.91507 0.91676 9.1395 6 Median 0.93218 0.92955 7.9853 2 0 Median 0.95928 0.82455 7.6762 2 0 Median 0.89378 0.97211 2.2632 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18390000 8883500 9506700 6800600 3474600 3325900 6961300 3022100 3939100 4628400 2386800 2241700 0 0 0 0 0 0 0 0 0 14065 2038 14637 71750;71751;71752;71753;71754;71755 72758;72759;72760;72761;72762;72763;72764;72765;72766 72760 9 IANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK SPEEKRKIIGDTFVKIANEVIGEMNLKPEE RPDLIESASLVASGKAELIKTHHNDTELIR K I A G K A 4 1 2 1 0 1 5 3 0 3 5 2 1 1 2 3 1 0 0 3 0 0 38 2 4038.1347 P49915 P49915 347 384 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 4 0.033142 11.976 By MS/MS 2 0.74899 0.75153 7.1846 2 Median NaN NaN NaN 0 0 Median 0.74899 0.75153 7.1846 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2342900 1353100 989740 0 0 0 2342900 1353100 989740 0 0 0 0 0 0 0 0 0 0 0 0 14066 2405 14638 71756;71757 72767;72768 72768 2 IANFVEHK DDLKEMGIPLGPRKKIANFVEHKAAKLKKA PLGPRKKIANFVEHKAAKLKKAASEKKAVA K I A H K A 1 0 1 0 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 956.50797 Q9Y6Y8 Q9Y6Y8 696 703 SEC23IP SEC23-interacting protein yes yes 2 0.0095557 60.59 By MS/MS By matching By matching 1 1 1 1.297 1.1138 12.772 3 Plateau NaN NaN NaN 0 0 Median 1.297 1.1138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99127 0.87038 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2435 1.0432 NaN 1 0 Median 5157100 1782300 3374800 0 0 0 4260700 1423800 2836900 0 0 0 118280 54677 63602 0 0 0 778120 303850 474270 14067 4502 14639 71758;71759;71760 72769 72769 1 IANILKDKDPPIPVAK PWCGHCKQFAPEYEKIANILKDKDPPIPVA ANILKDKDPPIPVAKIDATSASVLASRFDV K I A A K I 2 0 1 2 0 0 0 0 0 3 1 3 0 0 3 0 0 0 0 1 0 0 16 2 1731.0295 P13667;A0A499FI48 P13667 104 119 PDIA4 Protein disulfide-isomerase A4 yes no 3;4 0.0020949 31.596 By MS/MS 2 0.60405 0.5902 13.711 2 Median 0.60405 0.5902 13.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13406000 8444100 4962300 13406000 8444100 4962300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14068 1993 14640 71761;71762 72770;72771 72770 2 IANLAYVTK GTPAPGFSSMLYGMKIANLAYVTKTRVRFF MLYGMKIANLAYVTKTRVRFFRLDRWADVR K I A T K T 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 9 0 991.57023 Q9HCE1;Q5JR04 Q9HCE1 63 71 MOV10 Putative helicase MOV-10 yes no 2 0.0070414 52.716 By MS/MS By MS/MS By matching 1 1 2 1.3232 1.1151 29.605 4 Median 1.0082 1.0089 NaN 1 1 Median 2.1782 1.8726 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3232 1.1047 15.466 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7104700 2708500 4396200 1853800 969520 884280 4099200 1278000 2821200 0 0 0 1151700 461000 690700 0 0 0 0 0 0 14069 4029 14641 71763;71764;71765;71766 72772;72773 72773 2 IANLQTDLSDGLR FTRWCNEHLKCVSKRIANLQTDLSDGLRLI KRIANLQTDLSDGLRLIALLEVLSQKKMHR R I A L R L 1 1 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1414.7416 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 64 76 FLNA Filamin-A no no 2 3.6781E-40 187.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 8 3 3 2 1 1.0365 0.89887 37.592 20 Median 1.201 1.1558 22.418 4 0 Median 1.008 0.86407 46.275 8 0 Median 1.0629 1.1586 14.176 3 1 Plateau 1.0275 0.89494 42.257 3 0 Plateau 1.0279 1.0735 NaN 1 1 Median 1.0544 0.86511 NaN 1 0 Median 518660000 241800000 276850000 251400000 111610000 139790000 210110000 102950000 107160000 46513000 22311000 24202000 5120900 2491400 2629500 5289900 2340700 2949200 227020 104870 122150 14070 2088;3120 14642 71767;71768;71769;71770;71771;71772;71773;71774;71775;71776;71777;71778;71779;71780;71781;71782;71783;71784;71785;71786;71787 72774;72775;72776;72777;72778;72779;72780;72781;72782;72783;72784;72785;72786;72787;72788;72789;72790;72791;72792;72793;72794 72783 21 IANMFELSVPFR TSQSSGFSTNVQDQKIANMFELSVPFRQQH DQKIANMFELSVPFRQQHYLAGLVLTELAV K I A F R Q 1 1 1 0 0 0 1 0 0 1 1 0 1 2 1 1 0 0 0 1 0 0 12 0 1422.733 Q96N67;A0A1B0GWE0 Q96N67 1170 1181 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.00073786 90.629 By MS/MS 1 4.0006 3.7787 NaN 1 Median 4.0006 3.7787 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6462100 1684100 4778000 6462100 1684100 4778000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14071 3707 14643 71788 72795 72795 1 IANPDQLLTQDVEK LQAFTYYKMGNLDNRIANPDQLLTQDVEKF RIANPDQLLTQDVEKFCNSVVDLYSNLSKP R I A E K F 1 0 1 2 0 2 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1582.8203 P28288 P28288 182 195 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.0025187 42.556 By MS/MS By MS/MS 1 1 1.1947 1.1631 5.2281 2 Median 1.2648 1.2069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1284 1.1209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12455000 5667100 6788000 5964400 2842600 3121800 0 0 0 6490700 2824500 3666200 0 0 0 0 0 0 0 0 0 14072 2163 14644 71789;71790 72796;72797 72797 2 IANPVEGSSGR ANINEIRQMSGAQIKIANPVEGSSGRQVTI AQIKIANPVEGSSGRQVTITGSAASISLAQ K I A G R Q 1 1 1 0 0 0 1 2 0 1 0 0 0 0 1 2 0 0 0 1 0 0 11 0 1085.5465 Q15365 Q15365 315 325 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.00011205 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 0.94088 1.0598 18.657 13 Linear 0.75752 0.75218 6.7777 2 0 Median 1.0133 0.86907 0.46282 2 0 Median 0.80386 0.83401 16.268 2 0 Median 0.98018 0.80539 2.2442 2 0 Median 0.86218 0.87793 44.802 2 0 Median 0.98139 0.80139 20.544 3 0 Plateau 42107000 21080000 21027000 3416100 1997500 1418500 7079900 3218600 3861400 13316000 7007600 6308100 5563800 2660000 2903900 7232600 3353500 3879100 5499400 2842900 2656500 14073 2941 14645 71791;71792;71793;71794;71795;71796;71797;71798;71799;71800;71801;71802;71803 72798;72799;72800;72801;72802;72803;72804;72805;72806;72807;72808;72809;72810;72811;72812;72813;72814;72815;72816;72817;72818;72819;72820;72821;72822;72823;72824;72825 72804 28 IANPVEGSTDR AKINEIRQMSGAQIKIANPVEGSTDRQVTI AQIKIANPVEGSTDRQVTITGSAASISLAQ K I A D R Q 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 11 0 1157.5677 F8VRH0;H3BRU6;F8VZX2;Q15366;H3BSS4 Q15366 323 333 PCBP2 Poly(rC)-binding protein 2 no no 2 2.5888E-09 126.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 4 3 4 3 0.90029 0.81212 36.422 20 Median 0.63538 0.62049 23.046 3 0 Median 1.0271 0.8702 13.047 5 0 Median 0.76233 0.90974 25.322 4 0 Linear 0.96317 0.80407 20.862 3 0 Median 0.25048 0.27998 16.01 2 0 Median 1.0615 0.85665 9.7812 3 1 Plateau 146590000 79485000 67103000 13554000 7722200 5831500 20028000 10283000 9744400 60006000 31431000 28574000 24887000 12017000 12869000 14874000 11680000 3194100 13240000 6351500 6889000 14074 2942;1077;1062 14646 71804;71805;71806;71807;71808;71809;71810;71811;71812;71813;71814;71815;71816;71817;71818;71819;71820;71821;71822;71823;71824;71825 72826;72827;72828;72829;72830;72831;72832;72833;72834;72835;72836;72837;72838;72839;72840;72841;72842;72843;72844;72845;72846;72847;72848;72849;72850;72851;72852;72853;72854;72855;72856;72857;72858;72859;72860;72861;72862;72863;72864;72865 72843 40 IANVVINQSANDSK SNDSTDGEPEEKRRKIANVVINQSANDSKV KIANVVINQSANDSKVLIDNIPDSSSLIEE K I A S K V 2 0 3 1 0 1 0 0 0 2 0 1 0 0 0 2 0 0 0 2 0 0 14 0 1471.7631 A0A0A0MTH9;O14981 A0A0A0MTH9 249 262 BTAF1 TATA-binding protein-associated factor 172 yes no 2 8.1537E-06 91.937 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.94873 1.0558 22.133 5 Median NaN NaN NaN 0 0 Median 0.92246 0.80142 NaN 1 0 Median 0.94873 1.0558 NaN 1 0 Median 1.2408 1.1267 NaN 1 0 Median 0.8419 0.89063 NaN 1 0 Median 1.6561 1.4209 NaN 1 0 Median 11808000 5542900 6265000 0 0 0 840890 377340 463540 6224500 3148300 3076100 1516600 641660 874990 2262200 958350 1303800 963680 417180 546500 14075 191 14647 71826;71827;71828;71829;71830 72866;72867;72868;72869;72870;72871 72870 6 IAPAEAPDAK QHIKQLSRFAGASIKIAPAEAPDAKVRMVI GASIKIAPAEAPDAKVRMVIITGPPEAQFK K I A A K V 4 0 0 1 0 0 1 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 10 0 981.51311 O00425 O00425 441 450 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.025636 49.715 By MS/MS 1 4.8921 4.1007 NaN 1 Median NaN NaN NaN 0 0 Median 4.8921 4.1007 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9950200 1333900 8616300 0 0 0 9950200 1333900 8616300 0 0 0 0 0 0 0 0 0 0 0 0 14076 1462 14648 71831 72872 72872 1 IAPAEGPDVSER AHIKQLARFAGASIKIAPAEGPDVSERMVI SIKIAPAEGPDVSERMVIITGPPEAQFKAQ K I A E R M 2 1 0 1 0 0 2 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 12 0 1239.6095 F8W930;Q9Y6M1 F8W930 469 480 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.00082411 60.434 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 3 0.80185 0.74192 21.201 10 Median 0.77513 0.73777 NaN 1 0 Median 0.88116 0.76255 NaN 1 0 Median 0.71413 0.74603 5.7168 2 0 Median 0.89407 0.74609 NaN 1 0 Median 1.0281 1.0607 17.182 2 1 Median 0.76495 0.65738 11.812 3 0 Median 42800000 22847000 19953000 10917000 5822400 5094200 7000200 3800500 3199700 7991600 4467800 3523800 1647000 891350 755650 6493400 3109200 3384200 8751200 4755400 3995800 14077 1088 14649 71832;71833;71834;71835;71836;71837;71838;71839;71840;71841;71842 72873;72874;72875;72876;72877;72878;72879;72880;72881;72882;72883;72884;72885;72886 72876 14 IAPAFSSMSNK AVVKFTMRGCGPCLRIAPAFSSMSNKYPQA PCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ R I A N K Y 2 0 1 0 0 0 0 0 0 1 0 1 1 1 1 3 0 0 0 0 0 0 11 0 1151.5645 O43396;K7ER96;K7EPB7;K7EML9 O43396 40 50 TXNL1 Thioredoxin-like protein 1 yes no 2 0.0042118 70.056 By MS/MS By MS/MS 1 1 0.99713 0.87151 13.368 2 Median 1.0528 0.95791 NaN 1 1 Median 0.94445 0.79291 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24563000 12659000 11905000 18618000 9454500 9163500 5945200 3204200 2741000 0 0 0 0 0 0 0 0 0 0 0 0 14078 1570 14650 71843;71844 72887;72888 72888 2 IAPASQIDSAWIVYNKPK TSWASFHNGVAAGLKIAPASQIDSAWIVYN ASQIDSAWIVYNKPKHAELANEYAGFLMAL K I A P K H 3 0 1 1 0 1 0 0 0 3 0 2 0 0 2 2 0 1 1 1 0 0 18 1 2000.0731 Q9H1A4;H0Y564 Q9H1A4 1147 1164 ANAPC1 Anaphase-promoting complex subunit 1 yes no 3 0.00026907 37.583 By MS/MS 1 0.55397 0.63932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55397 0.63932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4715800 3573600 1142100 0 0 0 0 0 0 4715800 3573600 1142100 0 0 0 0 0 0 0 0 0 14079 3933 14651 71845 72889 72889 1 IAPELYHK FITYHNELDMNLYMRIAPELYHKMLVVGGI DMNLYMRIAPELYHKMLVVGGIDRVYEIGR R I A H K M 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 969.52837 Q15046 Q15046 298 305 KARS Lysine--tRNA ligase yes yes 2 0.005111 77.674 By matching By MS/MS 1 1 0.89489 0.82658 8.3903 2 Median 0.76351 0.77897 NaN 1 0 Median 1.0489 0.87711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15778000 7480200 8297900 260440 123270 137160 15518000 7356900 8160700 0 0 0 0 0 0 0 0 0 0 0 0 14080 2919 14652 71846;71847 72890;72891 72891 2 IAPLAEGALPYNLAELQR LYNASGRLTLADIERIAPLAEGALPYNLAE LAEGALPYNLAELQRQQSPGLGRPIWLQIA R I A Q R Q 4 1 1 0 0 1 2 1 0 1 4 0 0 0 2 0 0 0 1 0 0 0 18 0 1938.0575 O75746 O75746 292 309 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes yes 2 4.9791E-06 62.924 By MS/MS By MS/MS 1 2 0.85176 0.78365 58.362 2 Median 0.53219 0.51867 NaN 1 0 Median 1.3632 1.184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5669200 3731500 1937700 4707900 3256300 1451600 961350 475260 486090 0 0 0 0 0 0 0 0 0 0 0 0 14081 1694 14653 71848;71849;71850 72892;72893 72892 2 IAPLEEGTLPFNLAEAQR LYEPRGRMTLADIERIAPLEEGTLPFNLAE LEEGTLPFNLAEAQRQKASGDSARPVLLQV R I A Q R Q 3 1 1 0 0 1 3 1 0 1 3 0 0 1 2 0 1 0 0 0 0 0 18 0 1968.0316 Q9UJS0 Q9UJS0 293 310 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2;3 5.2904E-05 49.423 By MS/MS By MS/MS 2 2 0.84808 0.79123 20.388 4 Median 0.65781 0.64564 19.611 2 0 Median 0.99909 0.86436 3.353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14446000 8405100 6041100 10423000 6356900 4066100 4023300 2048200 1975000 0 0 0 0 0 0 0 0 0 0 0 0 14082 4297 14654 71851;71852;71853;71854 72894;72895;72896;72897;72898;72899 72894 6 IAPPEAPVTGYMFGK SRTTNFAGILSQGLRIAPPEAPVTGYMFGK IAPPEAPVTGYMFGKGIYFADMVSKSANYC R I A G K G 2 0 0 0 0 0 1 2 0 1 0 1 1 1 3 0 1 0 1 1 0 0 15 0 1576.796 P09874 P09874 879 893 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.0113E-06 91.03 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 1 13 9 6 4 0.82608 0.74179 15.261 37 Median 0.67019 0.66346 25.994 4 0 Median 0.85579 0.74488 NaN 1 0 Median 0.66501 0.70439 18.742 13 2 Median 0.86557 0.77086 7.6383 9 0 Median 0.73163 0.75464 14.226 6 0 Median 0.88469 0.75367 7.9361 4 0 Median 1014400000 588040000 426400000 52498000 31821000 20677000 2953500 1501600 1452000 784850000 459180000 325670000 107170000 58093000 49073000 60524000 34350000 26174000 6452900 3097800 3355100 14083 1922 14655;14656 71855;71856;71857;71858;71859;71860;71861;71862;71863;71864;71865;71866;71867;71868;71869;71870;71871;71872;71873;71874;71875;71876;71877;71878;71879;71880;71881;71882;71883;71884;71885;71886;71887;71888;71889;71890;71891 72900;72901;72902;72903;72904;72905;72906;72907;72908;72909;72910;72911;72912;72913;72914;72915;72916;72917;72918;72919;72920;72921;72922;72923;72924;72925;72926;72927;72928;72929;72930;72931;72932;72933;72934;72935;72936;72937;72938;72939;72940;72941;72942 72924 701 43 IAPPETPDSK QHIKQLSRFASASIKIAPPETPDSKVRMVI SASIKIAPPETPDSKVRMVIITGPPEAQFK K I A S K V 1 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 0 0 0 0 10 0 1053.5342 Q9NZI8 Q9NZI8 441 450 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.00033831 101.43 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.73779 0.61325 66.055 5 Median 0.54674 0.51816 NaN 1 0 Median 1.426 1.2107 107.07 2 0 Median 0.80949 0.84147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73779 0.61325 NaN 1 0 Median 27385000 15771000 11615000 8096900 5135100 2961800 11895000 6504400 5390300 6408200 3533500 2874700 0 0 0 0 0 0 985590 597450 388140 14084 4188 14657 71892;71893;71894;71895;71896 72943;72944;72945;72946;72947;72948;72949 72946 7 IAPRPASGPIRPIVR RKIRRRKARQAKARRIAPRPASGPIRPIVR IAPRPASGPIRPIVRCPTVRYHTKVRAGRG R I A V R C 2 3 0 0 0 0 0 1 0 3 0 0 0 0 4 1 0 0 0 1 0 0 15 2 1598.9733 P26373;J3QSB4 P26373 46 60 RPL13 60S ribosomal protein L13 yes no 3;4 5.2227E-10 126.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 1 4 0.62951 0.65571 13.885 17 Median 0.61431 0.64816 4.8813 4 0 Median 0.66527 0.72792 19.139 6 0 Median 0.59893 0.59191 7.0423 2 0 Median 0.78312 0.67188 NaN 1 0 Median 0.55109 0.67058 15.208 4 1 Median NaN NaN NaN 0 0 Median 299610000 178200000 121410000 47594000 28873000 18721000 43891000 25177000 18714000 11440000 6548400 4891300 3077600 1542500 1535100 193610000 116060000 77550000 0 0 0 14085 2144 14658 71897;71898;71899;71900;71901;71902;71903;71904;71905;71906;71907;71908;71909;71910;71911;71912;71913 72950;72951;72952;72953;72954;72955;72956;72957;72958;72959;72960;72961;72962;72963;72964;72965;72966;72967;72968 72961 19 IAPSHTMIPPATYSVALLAPK LKTSTTKCITGQESKIAPSHTMIPPATYSV MIPPATYSVALLAPKCEQDLTIKNDYSGKW K I A P K C 4 0 0 0 0 0 0 0 1 2 2 1 1 0 4 2 2 0 1 1 0 0 21 0 2177.1918 Q8NFC6 Q8NFC6 2578 2598 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 5.9867E-12 68.952 By MS/MS 1 0.44828 0.47942 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44828 0.47942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10361000 6514000 3847000 0 0 0 0 0 0 10361000 6514000 3847000 0 0 0 0 0 0 0 0 0 14086 3434 14659 71914 72969;72970 72970 2 IAPTKNEQQLFYISQPGSSVVTSLSPGEAVK DFIDLVIWGHEHECKIAPTKNEQQLFYISQ GSSVVTSLSPGEAVKKHVGLLRIKGRKMNM K I A V K K 2 0 1 0 0 3 2 2 0 2 2 2 0 1 3 5 2 0 1 3 0 0 31 1 3274.7085 P49959;F8W7U8 P49959 251 281 MRE11A Double-strand break repair protein MRE11A yes no 3 3.6349E-05 27.863 By matching By MS/MS 1 1 0.67733 0.73298 24.55 2 Median 0.84038 0.87193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54591 0.61617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4994500 2945900 2048600 966570 398110 568460 0 0 0 4027900 2547800 1480100 0 0 0 0 0 0 0 0 0 14087 2407 14660 71915;71916 72971;72972 72971 2 IAPVENDNSYDELKR TAVTEQLQLLPLFFKIAPVENDNSYDELKR IAPVENDNSYDELKRDAKLCLSLMSQGLLY K I A K R D 1 1 2 2 0 0 2 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 15 1 1761.8533 Q14997 Q14997 1606 1620 PSME4 Proteasome activator complex subunit 4 yes yes 3 7.9412E-05 53.403 By MS/MS By matching 1 1 1.0946 1.0711 26.607 2 Median 1.2826 1.2928 NaN 1 0 Median 0.93418 0.88739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9416200 5078800 4337400 6415700 3569300 2846300 3000500 1509500 1491000 0 0 0 0 0 0 0 0 0 0 0 0 14088 2906 14661 71917;71918 72973 72973 1 IAPVFFR GDIRVISEAEKAKQKIAPVFFREEYMLNNA EAEKAKQKIAPVFFREEYMLNNAVGSCQKP K I A F R E 1 1 0 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 7 0 848.49086 Q6NVY1;B8ZZZ0;H7BYI7 Q6NVY1 113 119 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 2 0.014239 74.832 By MS/MS By matching By matching 1 2 1 1.0427 1.0477 13.814 4 Median 0.92246 0.91915 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0427 1.0477 2.9276 2 0 Median 1.5183 1.2812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5658700 2707000 2951700 3345500 1640900 1704700 0 0 0 2082300 982600 1099800 230870 83580 147290 0 0 0 0 0 0 14089 3146 14662 71919;71920;71921;71922 72974;72975 72975 2 IAPVHIDSEAISALVK PTNPFLEMVKFLLERIAPVHIDSEAISALV APVHIDSEAISALVKLMNKSIEGTADDEEE R I A V K L 3 0 0 1 0 0 1 0 1 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1661.9352 Q29RF7 Q29RF7 618 633 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 3.5885E-06 76.332 By matching By matching By MS/MS By matching By matching 1 1 4 3 1 0.97932 0.90616 16.967 10 Median 0.88362 0.83067 NaN 1 0 Median 1.1525 1.0138 NaN 1 0 Median 0.84766 0.90423 6.9085 4 2 Median 1.028 0.90084 10.276 3 0 Median NaN NaN NaN 0 0 Median 1.7888 1.4931 NaN 1 0 Median 62032000 31871000 30161000 1674000 689290 984720 2085600 960720 1124900 55600000 29211000 26389000 1284400 636890 647490 0 0 0 1388700 373410 1015300 14090 3003 14663 71923;71924;71925;71926;71927;71928;71929;71930;71931;71932 72976;72977;72978;72979;72980 72978 5 IAPVHIDTESISALIK PTNPFLEMIKFLLERIAPVHIDTESISALI APVHIDTESISALIKQVNKSIDGTADDEDE R I A I K Q 2 0 0 1 0 0 1 0 1 4 1 1 0 0 1 2 1 0 0 1 0 0 16 0 1705.9614 Q9NTI5 Q9NTI5 608 623 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 0.00013928 61.344 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 4 2 3 3 0.84155 0.82008 17.664 14 Median 0.70373 0.66254 NaN 1 0 Median 0.98375 0.85183 NaN 1 0 Median 0.77457 0.83184 7.1299 4 0 Median 0.91876 0.82965 8.4979 2 0 Median 0.77438 0.81052 15.99 3 0 Median 0.94713 0.77666 33.581 3 0 Median 35809000 20405000 15404000 1313900 706670 607240 626150 323430 302710 18176000 10210000 7966500 915170 453920 461250 12251000 7412300 4838800 2526200 1298500 1227700 14091 4107 14664 71933;71934;71935;71936;71937;71938;71939;71940;71941;71942;71943;71944;71945;71946 72981;72982;72983;72984;72985;72986 72983 6 IAPYSVEIK ILKFLCIFLEKMGQKIAPYSVEIKNTCTSV EKMGQKIAPYSVEIKNTCTSVYTKDRAAKC K I A I K N 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 1 0 0 9 0 1018.5699 P78527;F5GX40 P78527 100 108 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00088636 92.439 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 2 1.076 1.006 18.128 12 Median 0.85515 0.85874 NaN 1 0 Median 1.1798 1.0509 7.6781 2 1 Median 0.78807 0.83579 10.349 3 0 Median 1.1502 1.0393 30.253 2 0 Median 1.1029 1.1474 17.099 2 0 Median 1.4814 1.2506 2.8218 2 0 Median 301810000 158420000 143400000 48213000 25598000 22614000 52334000 23545000 28789000 166340000 93622000 72721000 17228000 7243100 9984400 13881000 6796900 7083900 3815800 1610100 2205800 14092 2647 14665 71947;71948;71949;71950;71951;71952;71953;71954;71955;71956;71957;71958;71959;71960;71961 72987;72988;72989;72990;72991;72992;72993;72994;72995;72996;72997;72998;72999;73000;73001;73002;73003 72987 17 IAPYVAHNFSK QSLLATRVRTHDLKKIAPYVAHNFSKLFSM DLKKIAPYVAHNFSKLFSMENWGGATFDVA K I A S K L 2 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 0 1 1 0 0 11 0 1245.6506 P11498;A0A494C016 P11498 590 600 PC Pyruvate carboxylase, mitochondrial yes no 2;3 0.001597 52.49 By MS/MS By MS/MS 2 2 1.3477 1.2339 9.7766 4 Median 1.2512 1.2297 8.4762 2 0 Median 1.5181 1.2869 13.937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24718000 10274000 14444000 7806500 3286000 4520500 16912000 6987900 9923700 0 0 0 0 0 0 0 0 0 0 0 0 14093 1967 14666 71962;71963;71964;71965 73004;73005;73006 73006 3 IAQDKLNDIKEK QEKEELINKKNTSNKIAQDKLNDIKEKVKN SNKIAQDKLNDIKEKVKNIHGYMKDIENYI K I A E K V 1 0 1 2 0 1 1 0 0 2 1 3 0 0 0 0 0 0 0 0 0 0 12 2 1413.7827 Q92878;A0A1W2PQ90 Q92878 939 950 RAD50 DNA repair protein RAD50 yes no 3 0.00050143 51.841 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.0549 1.0916 18.643 5 Median 0.99704 1.0916 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81398 0.97811 NaN 1 0 Median 1.0549 1.0692 NaN 1 0 Median 1.3584 1.5902 NaN 1 0 Median 1.1122 1.147 NaN 1 0 Median 10395000 5184800 5210300 1389400 659780 729600 0 0 0 5372600 2942900 2429800 168630 78982 89651 2835700 1217900 1617800 628810 285280 343530 14094 3561 14667 71966;71967;71968;71969;71970 73007;73008 73008 2 IAQDLEMYGINYFEIK HRGMLKDNAMLEYLKIAQDLEMYGINYFEI AQDLEMYGINYFEIKNKKGTDLWLGVDALG K I A I K N 1 0 1 1 0 1 2 1 0 3 1 1 1 1 0 0 0 0 2 0 0 0 16 0 1945.9496 P15311;E7EQR4 P15311 194 209 EZR Ezrin yes no 2 0.046755 22.533 By MS/MS By matching 1 1 1.1933 1.0673 9.4979 2 Median NaN NaN NaN 0 0 Median 1.1089 0.99796 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2842 1.1414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1101000 515950 585050 0 0 0 903480 430330 473150 0 0 0 197520 85616 111910 0 0 0 0 0 0 14095 879 14668 71971;71972 73009 73009 1 IAQDLEMYGVNYFSIK HRGMLREDAVLEYLKIAQDLEMYGVNYFSI AQDLEMYGVNYFSIKNKKGSELWLGVDALG K I A I K N 1 0 1 1 0 1 1 1 0 2 1 1 1 1 0 1 0 0 2 1 0 0 16 0 1889.9233 P26038 P26038 194 209 MSN Moesin yes yes 2 1.7155E-05 84.289 By MS/MS By matching By MS/MS By matching 5 2 2 4 1.1959 1.0814 13.112 13 Median 1.0281 0.99238 18.696 5 0 Median 1.2487 1.0947 8.1435 2 0 Median 1.1797 1.2145 6.2437 2 0 Median 1.2394 1.0717 5.11 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42552000 19844000 22709000 18208000 8601800 9605900 2163900 1087900 1076000 19817000 9112800 10704000 2364300 1041300 1323000 0 0 0 0 0 0 14096 2139 14669;14670 71973;71974;71975;71976;71977;71978;71979;71980;71981;71982;71983;71984;71985 73010;73011;73012;73013;73014;73015;73016 73012 899 7 IAQETFDAAVR ______________________________ VSKRIAQETFDAAVRENIEEFAMGPEEAV_ R I A V R E 3 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 11 0 1219.6197 F5H7V0;F5GZP0;F5H3X1;F5H052;F5H2X2;F5H2K4;F5GWV0;F5H4P3;Q6NXE6 F5H7V0 6 16 ARMC6 Armadillo repeat-containing protein 6 yes no 2 0.0013961 81.525 By MS/MS By MS/MS 1 1 1.1805 1.0678 12.243 2 Median 1.2101 1.1644 NaN 1 1 Median 1.1517 0.97927 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13106000 5818900 7287300 8943900 4004700 4939200 4162300 1814200 2348100 0 0 0 0 0 0 0 0 0 0 0 0 14097 1002 14671 71986;71987 73017;73018 73017 2 IAQEVQR SVLAQEEQGGSAVRRIAQEVQRFAQEKGHD QGGSAVRRIAQEVQRFAQEKGHDASQITLA R I A Q R F 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 7 0 842.46102 H0UI80;X6RLT1;Q8IXH7 H0UI80 270 276 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.059164 37.646 By MS/MS 1 0.94838 0.95423 NaN 1 Median 0.94838 0.95423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2298000 1200100 1097900 2298000 1200100 1097900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14098 1138 14672 71988 73019 73019 1 IAQFLSDIPETVPLSTVNR VGNVLQPGAGAIMARIAQFLSDIPETVPLS LSDIPETVPLSTVNRQCSSGLQAVASIAGG R I A N R Q 1 1 1 1 0 1 1 0 0 2 2 0 0 1 2 2 2 0 0 2 0 0 19 0 2099.1263 H7C131;P09110;B4DVF4 H7C131 26 44 ACAA1 3-ketoacyl-CoA thiolase, peroxisomal yes no 2;3 0.041788 20.953 By MS/MS 2 0.77965 0.78681 1.928 2 Median 0.77965 0.78681 1.928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3852300 2101300 1751000 3852300 2101300 1751000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14099 1258 14673 71989;71990 73020;73021;73022;73023 73021 4 IAQGVSGSIQDK SSSQKRYFSEGDKVKIAQGVSGSIQDKGSI KVKIAQGVSGSIQDKGSIQKFVPYLIAGIQ K I A D K G 1 0 0 1 0 2 0 2 0 2 0 1 0 0 0 2 0 0 0 1 0 0 12 0 1201.6303 A0A3B3IRL5;C9J381;P20839 A0A3B3IRL5 402 413 IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 2 3.5722E-06 107.83 By MS/MS By MS/MS 2 1 1.2158 1.0696 17.44 3 Median 1.3057 1.2332 20.13 2 0 Median 1.2158 1.0357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9870100 4585600 5284500 5499300 2443600 3055700 4370800 2142000 2228800 0 0 0 0 0 0 0 0 0 0 0 0 14100 413 14674 71991;71992;71993 73024;73025;73026 73026 3 IAQITGPPDR VRIQFKPDDGTTPERIAQITGPPDRCQHAA TTPERIAQITGPPDRCQHAAEIITDLLRSV R I A D R C 1 1 0 1 0 1 0 1 0 2 0 0 0 0 2 0 1 0 0 0 0 0 10 0 1066.5771 Q96AE4;E9PEB5 Q96AE4 322 331 FUBP1 Far upstream element-binding protein 1 yes no 2 0.00040727 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 5 3 0.94432 0.81926 47.291 11 Median 0.84535 0.81926 NaN 1 1 Median 0.96302 0.83343 NaN 1 0 Median 0.94139 0.94359 NaN 1 0 Median 0.98535 0.85124 15.163 5 0 Median NaN NaN NaN 0 0 Median 0.88545 0.76292 83.29 3 2 Median 93906000 50064000 43842000 3528100 1863900 1664100 5416500 2732900 2683700 58866000 31868000 26998000 20006000 10157000 9848400 0 0 0 6089300 3442100 2647200 14101 3599 14675 71994;71995;71996;71997;71998;71999;72000;72001;72002;72003;72004 73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039 73034 13 IAQLASITGPQSR PSQAQARLPSGEVVKIAQLASITGPQSRVA VKIAQLASITGPQSRVAQPETPVTLQFQGS K I A S R V 2 1 0 0 0 2 0 1 0 2 1 0 0 0 1 2 1 0 0 0 0 0 13 0 1340.7412 Q96L91 Q96L91 1606 1618 EP400 E1A-binding protein p400 yes yes 2 1.1828E-06 163.9 By MS/MS By MS/MS By MS/MS 2 2 1 0.84467 0.81695 9.9247 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7781 0.83508 3.1048 2 0 Median 0.96014 0.84163 19.031 2 0 Median NaN NaN NaN 0 0 Median 0.95294 0.79593 NaN 1 0 Median 45421000 24252000 21169000 0 0 0 0 0 0 40834000 22078000 18756000 3984200 1844600 2139500 0 0 0 602650 329510 273140 14102 3700 14676 72005;72006;72007;72008;72009 73040;73041;73042;73043;73044;73045;73046 73041 6 IAQLEAELALQK IQENQELGRQLSQGRIAQLEAELALQKKYS QGRIAQLEAELALQKKYSEELKSSQDELND R I A Q K K 3 0 0 0 0 2 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1325.7555 Q15007 Q15007 180 191 WTAP Pre-mRNA-splicing regulator WTAP yes yes 2 9.1523E-06 98.048 By MS/MS By matching By matching 3 1 1 0.979 0.94646 13.31 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.979 0.94646 11.787 3 0 Median 1.1469 0.99131 NaN 1 0 Median 0.81495 0.78368 NaN 1 0 Median NaN NaN NaN 0 0 Median 29689000 15475000 14214000 0 0 0 0 0 0 27278000 14244000 13034000 1012800 440340 572430 1398000 790070 607930 0 0 0 14103 2910 14677 72010;72011;72012;72013;72014 73047;73048;73049 73047 3 IAQLEEELEEEQGNTELINDR KGALALEEKRRLEARIAQLEEELEEEQGNT ELEEEQGNTELINDRLKKANLQIDQINTDL R I A D R L 1 1 2 1 0 2 7 1 0 2 3 0 0 0 0 0 1 0 0 0 0 0 21 0 2471.1664 P35579 P35579 1731 1751 MYH9 Myosin-9 yes yes 2;3 9.9567E-108 254.18 By MS/MS By MS/MS 2 2 0.98812 0.87366 9.6898 4 Median 1.0308 0.96731 8.5476 2 0 Median 0.98812 0.83723 0.16929 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61192000 27379000 33814000 48544000 21479000 27066000 12648000 5900000 6747900 0 0 0 0 0 0 0 0 0 0 0 0 14104 2244 14678 72015;72016;72017;72018 73050;73051;73052;73053;73054;73055 73052 6 IAQLEEELEEEQGNTELINDRLK KGALALEEKRRLEARIAQLEEELEEEQGNT EEEQGNTELINDRLKKANLQIDQINTDLNL R I A L K K 1 1 2 1 0 2 7 1 0 2 4 1 0 0 0 0 1 0 0 0 0 0 23 1 2712.3454 P35579 P35579 1731 1753 MYH9 Myosin-9 yes yes 3 9.9783E-05 46.178 By MS/MS 1 0.85128 0.86002 NaN 1 Median 0.85128 0.86002 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4353000 2065900 2287100 4353000 2065900 2287100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14105 2244 14679 72019 73056 73056 1 IAQLEEQLDNETK VKSKYKASITALEAKIAQLEEQLDNETKER AKIAQLEEQLDNETKERQAACKQVRRTEKK K I A T K E 1 0 1 1 0 2 3 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1529.7573 P35579 P35579 1816 1828 MYH9 Myosin-9 yes yes 2 1.0181E-30 206.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 1 1 1.1778 1.13 17.092 7 Median 1.1915 1.13 NaN 1 0 Median 1.0673 0.943 22.831 3 1 Median 0.95163 1.0464 NaN 1 0 Median 1.2602 1.1342 NaN 1 0 Median 1.1778 1.2331 NaN 1 0 Median NaN NaN NaN 0 0 Median 373150000 172700000 200450000 122980000 54500000 68476000 196710000 93060000 103650000 33707000 16629000 17078000 6989300 3097600 3891700 12771000 5411800 7358900 0 0 0 14106 2244 14680 72020;72021;72022;72023;72024;72025;72026;72027 73057;73058;73059;73060;73061;73062;73063;73064;73065;73066;73067;73068;73069 73057 13 IAQLEEQLDNETKER VKSKYKASITALEAKIAQLEEQLDNETKER IAQLEEQLDNETKERQAACKQVRRTEKKLK K I A E R Q 1 1 1 1 0 2 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 15 1 1814.901 P35579 P35579 1816 1830 MYH9 Myosin-9 yes yes 2;3 1.8828E-19 192.3 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 1 1.1535 1.2226 14.712 10 Median 1.2481 1.2324 4.6048 3 0 Plateau 1.0541 1.0032 21.457 2 0 Median 1.0793 1.293 15.662 3 2 Plateau NaN NaN NaN 0 0 Median 1.2479 1.4163 NaN 1 0 Median 1.4593 1.2963 NaN 1 0 Median 375980000 168640000 207350000 294230000 130830000 163410000 7061300 3121300 3940000 63872000 30064000 33808000 0 0 0 10489000 4448900 6040100 329340 174820 154520 14107 2244 14681 72028;72029;72030;72031;72032;72033;72034;72035;72036;72037 73070;73071;73072;73073;73074;73075;73076;73077;73078;73079;73080;73081;73082 73077 13 IAQLICER FNFGKEKFEVKKGDRIAQLICERIFYPEIE EVKKGDRIAQLICERIFYPEIEEVQALDDT R I A E R I 1 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 1001.5328 H0YNW5;H0YKC5;P33316;A0A0C4DGL3;H0YMP1 H0YNW5 132 139 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial yes no 2 0.0025671 124.08 By MS/MS By MS/MS 1 1 0.89831 0.81703 19.507 2 Median 0.71338 0.71176 NaN 1 1 Median 1.1312 0.93787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11559000 5771500 5787600 3634000 2210700 1423300 7925100 3560700 4364300 0 0 0 0 0 0 0 0 0 0 0 0 14108 1190 14682 72038;72039 73083;73084;73085 73085 3 IAQLQEALLHCGK INARWNTLNKKVAQRIAQLQEALLHCGKFQ QRIAQLQEALLHCGKFQDALEPLLSWLADT R I A G K F 2 0 0 0 1 2 1 1 1 1 3 1 0 0 0 0 0 0 0 0 0 0 13 0 1479.7868 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;A0A0A6YYJ5 H3BPE1 5331 5343 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00042374 67.456 By MS/MS 1 1.5142 1.3239 NaN 1 Median NaN NaN NaN 0 0 Median 1.5142 1.3239 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5863300 2073700 3789600 0 0 0 5863300 2073700 3789600 0 0 0 0 0 0 0 0 0 0 0 0 14109 1220 14683 72040 73086 73086 1 IAQNFGLQHLSSGHFLR ILGPPGSGKGTVCQRIAQNFGLQHLSSGHF QNFGLQHLSSGHFLRENIKASTEVGEMAKQ R I A L R E 1 1 1 0 0 2 0 2 2 1 3 0 0 2 0 2 0 0 0 0 0 0 17 0 1924.0068 P27144 P27144 25 41 AK4 Adenylate kinase 4, mitochondrial yes yes 3;4 7.2125E-14 117 By MS/MS By MS/MS 2 1 1.159 1.1026 24.918 3 Median 1.0871 1.034 9.0887 2 0 Median 1.854 1.5689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104860000 47317000 57543000 101460000 46343000 55114000 3403700 974270 2429400 0 0 0 0 0 0 0 0 0 0 0 0 14110 2151 14684 72041;72042;72043 73087;73088;73089;73090;73091 73090 5 IAQPGDHVSVTGIFLPILR IPRSITVLVEGENTRIAQPGDHVSVTGIFL GDHVSVTGIFLPILRTGFRQVVQGLLSETY R I A L R T 1 1 0 1 0 1 0 2 1 3 2 0 0 1 2 1 1 0 0 2 0 0 19 0 2032.1469 P33993;C9J8M6 P33993 264 282 MCM7 DNA replication licensing factor MCM7 yes no 2;3 8.6355E-19 148.26 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 5 3 1 2 1 0.70717 0.65581 15.795 15 Median 0.66502 0.64593 5.2645 4 1 Median 0.84593 0.73134 17.582 5 0 Median 0.57611 0.61046 9.0532 3 0 Median 0.96686 0.80797 NaN 1 0 Median 0.67085 0.69508 21.172 2 0 Median NaN NaN NaN 0 0 Median 175350000 93114000 82232000 19815000 11664000 8150800 134660000 68950000 65712000 18704000 11227000 7477200 227960 111800 116160 1848200 1115400 732830 88968 46177 42791 14111 2225 14685 72044;72045;72046;72047;72048;72049;72050;72051;72052;72053;72054;72055;72056;72057;72058;72059 73092;73093;73094;73095;73096;73097;73098;73099;73100;73101;73102;73103;73104;73105;73106;73107;73108;73109;73110;73111;73112 73108 21 IAQPHHGVPYFR LPIKEVPSLERNEGRIAQPHHGVPYFRNIL EGRIAQPHHGVPYFRNILQSETEKLTSHCF R I A F R N 1 1 0 0 0 1 0 1 2 1 0 0 0 1 2 0 0 0 1 1 0 0 12 0 1420.7364 Q15398 Q15398 423 434 DLGAP5 Disks large-associated protein 5 yes yes 3 0.0066957 30.729 By MS/MS By MS/MS By matching 1 2 1 1.18 0.91078 25.048 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1243 1.2032 NaN 1 0 Median 0.92113 0.7891 26.167 2 0 Median 0.75837 0.87365 NaN 1 0 Median NaN NaN NaN 0 0 Median 9505000 5141400 4363600 0 0 0 0 0 0 4167200 2152200 2015000 4419900 2457500 1962300 917970 531670 386290 0 0 0 14112 2948 14686 72060;72061;72062;72063 73113;73114;73115;73116 73113 4 IAQPNYIPTQQDVLR QLNDSAAYYLNDLDRIAQPNYIPTQQDVLR IAQPNYIPTQQDVLRTRVKTTGIVETHFTF R I A L R T 1 1 1 1 0 3 0 0 0 2 1 0 0 0 2 0 1 0 1 1 0 0 15 0 1754.9315 P63096;A0A3B3ITM0 P63096 162 176 GNAI1 Guanine nucleotide-binding protein G(i) subunit alpha-1 yes no 2 2.8939E-06 91.313 By MS/MS By matching By matching By MS/MS 1 1 1 2 0.76581 0.68336 13.439 5 Median 0.62198 0.62037 NaN 1 0 Median 0.76581 0.68336 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85906 0.72235 NaN 1 0 Median 0.73439 0.73591 22.611 2 0 Median NaN NaN NaN 0 0 Median 21020000 12497000 8522700 13315000 8206800 5107700 314120 158490 155630 0 0 0 299660 137110 162540 7091300 3994600 3096800 0 0 0 14113 2617 14687 72064;72065;72066;72067;72068 73117;73118;73119;73120 73118 4 IAQPSMTASPQTEEFFDLIASSQSR AGAAEATAAPTLEDRIAQPSMTASPQTEEF QTEEFFDLIASSQSRRLDDQRASVGSLPGL R I A S R R 3 1 0 1 0 3 2 0 0 2 1 0 1 2 2 5 2 0 0 0 0 0 25 0 2740.3014 A0A0A0MSK4;A0A0A0MRC4;Q86YR5 A0A0A0MSK4 537 561 GPSM1 G-protein-signaling modulator 1 yes no 3 0.031903 11.853 By MS/MS 1 0.4849 0.48211 NaN 1 Median 0.4849 0.48211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1050200 693450 356760 1050200 693450 356760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14114 157 14688 72069 73121 73121 1 IAQSAELADREK DRKATVDMLQAEGGRIAQSAELADREKITG GGRIAQSAELADREKITGQLESLESRWTEL R I A E K I 3 1 0 1 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1329.6888 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;A0A0A6YYJ5 H3BPE1 5406 5417 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 0.0018554 61.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.95232 1.0405 63.562 6 Median 1.0284 1.0517 NaN 1 0 Median 1.1066 1.0448 NaN 1 0 Median 0.99131 1.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42004 0.47604 109.99 2 1 Median 0.8328 0.73978 NaN 1 0 Median 17318000 11678000 5639800 2350100 1136900 1213200 3202500 1524900 1677600 663070 351060 312010 0 0 0 10026000 8172600 1853700 1076200 492890 583280 14115 1220 14689 72070;72071;72072;72073;72074;72075 73122;73123;73124;73125;73126;73127;73128 73122 6 IAQSDYIPTQQDVLR QLNDSAAYYLNDLERIAQSDYIPTQQDVLR IAQSDYIPTQQDVLRTRVKTTGIVETHFTF R I A L R T 1 1 0 2 0 3 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 15 0 1745.8948 P04899 P04899 163 177 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 4.6018E-06 87.184 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 2 0.94287 0.9033 10.453 7 Median 0.78318 0.78533 NaN 1 0 Median 0.95954 0.81997 NaN 1 0 Median 0.96103 0.99039 10.664 2 0 Median 1.1143 0.9903 NaN 1 0 Median 0.8974 0.90173 0.24626 2 0 Median NaN NaN NaN 0 0 Median 98605000 51037000 47569000 41870000 22720000 19150000 1397600 678420 719180 23658000 11282000 12376000 1234200 558950 675280 30446000 15798000 14648000 0 0 0 14116 1855 14690 72076;72077;72078;72079;72080;72081;72082 73129;73130;73131;73132;73133;73134;73135;73136;73137 73133 9 IARPFIEALK VLSQEPSVTETIAPKIARPFIEALKSIEYL TIAPKIARPFIEALKSIEYLEEDAQKSAQE K I A L K S 2 1 0 0 0 0 1 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 10 1 1156.6968 Q96L91 Q96L91 2099 2108 EP400 E1A-binding protein p400 yes yes 2 0.0053689 68.224 By MS/MS 1 0.77382 0.89742 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77382 0.89742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12347000 6645700 5701400 0 0 0 0 0 0 12347000 6645700 5701400 0 0 0 0 0 0 0 0 0 14117 3700 14691 72083 73138;73139 73139 2 IASFPTAK RNEVRTHVGSYKGKKIASFPTAKYITEPEM GSYKGKKIASFPTAKYITEPEMVFEEHEVN K I A A K Y 2 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 8 0 833.4647 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 278 285 GRSF1 G-rich sequence factor 1 yes no 2 0.05728 49.358 By MS/MS 1 1.3238 1.1488 NaN 1 Median NaN NaN NaN 0 0 Median 1.3238 1.1488 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1401900 633150 768800 0 0 0 1401900 633150 768800 0 0 0 0 0 0 0 0 0 0 0 0 14118 1035 14692 72084 73140 73140 1 IASFWATR KPVNRDGLSSSRDQKIASFWATRNLTNLAS SSSRDQKIASFWATRNLTNLASNVKIENDG K I A T R N 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 8 0 950.4974 Q96DT7 Q96DT7 498 505 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 2 0.020415 46.426 By MS/MS By matching 2 1 0.80548 0.94893 18.184 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85619 0.92703 13.934 2 0 Median 0.80548 0.71144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3910900 2125000 1786000 0 0 0 0 0 0 3722600 2015200 1707400 188290 109720 78573 0 0 0 0 0 0 14119 3628 14693 72085;72086;72087 73141 73141 1 IASGLGLAWIVGR PFLFFLAVGGVYHPRIASGLGLAWIVGRVL PRIASGLGLAWIVGRVLYAYGYYTGEPSKR R I A G R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 1 0 1 0 0 13 0 1311.7663 O14880;Q5VV89;Q5VV87 O14880 85 97 MGST3 Microsomal glutathione S-transferase 3 yes no 2 9.9568E-07 103.7 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1.6052 1.2949 12.804 6 Median 1.5933 1.607 NaN 1 0 Median 1.7084 1.4358 NaN 1 0 Median 1.1098 1.1247 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.19 1.2584 NaN 1 0 Median 1.6588 1.2675 7.0685 2 0 Median 44207000 16486000 27721000 371040 135410 235630 2007300 764090 1243200 1956000 926790 1029300 0 0 0 1377900 587890 789970 38495000 14072000 24423000 14120 1500 14694 72088;72089;72090;72091;72092;72093;72094 73142;73143;73144;73145;73146;73147;73148 73148 6 IASLEVENQSLR ASSGTSGDHGELVVRIASLEVENQSLRGVV VVRIASLEVENQSLRGVVQELQQAISKLEA R I A L R G 1 1 1 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1357.7201 E9PL71;E9PN91;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7 P29692 84 95 EEF1D Elongation factor 1-delta no no 2 7.3144E-31 215.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 7 1 2 1.1456 0.95139 76.705 17 Median 0.54138 0.51001 108.04 2 1 Median 0.78677 0.66193 51.303 2 0 Median 1.3141 1.2633 84.96 3 1 Plateau 1.153 0.95471 94.018 7 1 Median 1.2742 1.2819 NaN 1 0 Median 1.2013 0.95649 7.7607 2 0 Median 2801700000 1277700000 1524000000 359800000 169390000 190410000 107380000 50474000 56902000 715380000 326350000 389040000 1554000000 701910000 852090000 13081000 5279400 7801900 52064000 24302000 27762000 14121 985;2174;957 14695 72095;72096;72097;72098;72099;72100;72101;72102;72103;72104;72105;72106;72107;72108;72109;72110;72111 73149;73150;73151;73152;73153;73154;73155;73156;73157;73158;73159;73160;73161;73162;73163;73164;73165;73166;73167;73168;73169;73170;73171;73172;73173;73174;73175 73150 27 IASLLHR LKAAVMKYGKNQWSRIASLLHRKSAKQCKA YGKNQWSRIASLLHRKSAKQCKARWYEWLD R I A H R K 1 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 7 0 808.49192 Q99459 Q99459 34 40 CDC5L Cell division cycle 5-like protein yes yes 2 0.007586 88.734 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 3 1.1399 0.98585 16 13 Median NaN NaN NaN 0 0 Median 1.1399 0.99273 4.3968 3 0 Median 0.92007 0.9507 17.323 2 0 Median 1.3291 1.1305 26.682 3 0 Plateau 1.0731 1.1151 17.776 2 0 Median 1.1771 0.96248 15.236 3 0 Median 13348000 6293500 7054300 0 0 0 3040900 1383800 1657000 2521900 1256300 1265600 1824800 897620 927170 2529600 1174900 1354800 3430500 1580800 1849700 14122 3745 14696 72112;72113;72114;72115;72116;72117;72118;72119;72120;72121;72122;72123;72124 73176;73177;73178;73179;73180 73177 5 IASLPQEVQDVSLLEK DLENAASGDATVRQKIASLPQEVQDVSLLE ASLPQEVQDVSLLEKITDKEAAERLSKTVD K I A E K I 1 0 0 1 0 2 2 0 0 1 3 1 0 0 1 2 0 0 0 2 0 0 16 0 1767.9618 Q9NQG5;A2A2M0 Q9NQG5 201 216 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2 3.0823E-08 128.85 By matching By MS/MS By matching By matching 1 1 1 1 0.87034 0.84335 9.8107 3 Median NaN NaN NaN 0 0 Median 1.0166 0.86152 NaN 1 0 Median 0.74752 0.71991 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87034 0.84335 NaN 1 0 Median NaN NaN NaN 0 0 Median 19229000 10557000 8672600 0 0 0 1154500 570240 584290 17610000 9755400 7854100 0 0 0 357310 179010 178300 107960 52040 55918 14123 4062 14697 72125;72126;72127;72128 73181;73182;73183;73184 73183 4 IASLPVEVQEVSLLDK DLENAASGDAAVHQRIASLPVEVQEVSLLD ASLPVEVQEVSLLDKITDKESGERLSKMVE R I A D K I 1 0 0 1 0 1 2 0 0 1 3 1 0 0 1 2 0 0 0 3 0 0 16 0 1738.9717 Q96P16;A0A0C4DGQ6;K7EP82 Q96P16 187 202 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 0.00013579 57.019 By MS/MS By matching By matching By matching 1 1 1 2 0.94019 0.78456 8.1309 5 Median NaN NaN NaN 0 0 Median 1.0032 0.84521 NaN 1 0 Median 0.71343 0.6844 NaN 1 0 Median 0.97381 0.82305 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93752 0.78352 0.18649 2 0 Median 5985900 2561100 3424700 0 0 0 2669500 762450 1907100 2272200 1322500 949690 197810 105920 91890 0 0 0 846350 370240 476100 14124 3709 14698 72129;72130;72131;72132;72133 73185 73185 1 IASNVLNTK VTWSMQEDGLLVLCRIASNVLNTKVKGPFV LLVLCRIASNVLNTKVKGPFVTWQVVRDIL R I A T K V 1 0 2 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 958.54475 Q12789;H3BRD0 Q12789 1278 1286 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0028118 69.423 By MS/MS 1 0.78476 0.87414 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78476 0.87414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4840000 2518200 2321900 0 0 0 0 0 0 4840000 2518200 2321900 0 0 0 0 0 0 0 0 0 14125 2758 14699 72134 73186 73186 1 IASPEGQDYLK RDKIIVNDRQLACARIASPEGQDYLKGMAA ACARIASPEGQDYLKGMAAAGNYAWVNRSS R I A L K G 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 0 1219.6085 Q9Y3I0 Q9Y3I0 298 308 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00015337 91.867 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0541 0.89281 8.4577 5 Median 1.0735 0.98895 NaN 1 0 Median 1.0541 0.89281 NaN 1 0 Median 0.91391 0.8832 NaN 1 0 Median 1.0867 0.95341 13.906 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105930000 52404000 53527000 30304000 15474000 14830000 14751000 7215100 7536200 31655000 16560000 15095000 29220000 13155000 16066000 0 0 0 0 0 0 14126 4430 14700 72135;72136;72137;72138;72139 73187;73188;73189;73190;73191;73192;73193;73194;73195;73196 73192 10 IASQMITEGR ELGALLEIPAAKAEKIASQMITEGRMNGFI AKAEKIASQMITEGRMNGFIDQIDGIVHFE K I A G R M 1 1 0 0 0 1 1 1 0 2 0 0 1 0 0 1 1 0 0 0 0 0 10 0 1104.5597 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 338 347 COPS4 COP9 signalosome complex subunit 4 yes no 2 0.0019917 78.655 By MS/MS By MS/MS By MS/MS 2 1 1 1.1105 1.1564 21.855 4 Median 1.0433 1.0397 3.9923 2 2 Median NaN NaN NaN 0 0 Median 1.1492 1.2504 NaN 1 1 Median 1.8982 1.6466 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33756000 15519000 18236000 22231000 10575000 11656000 0 0 0 8988700 4055100 4933600 2536400 889750 1646600 0 0 0 0 0 0 14127 813 14701 72140;72141;72142;72143 73197;73198;73199;73200 73197 4 IASQVAALDLGYKPGVEAIR SGVTGDWKVMNILHRIASQVAALDLGYKPG AALDLGYKPGVEAIRKNPPKVLFLLGADGG R I A I R K 4 1 0 1 0 1 1 2 0 2 2 1 0 0 1 1 0 0 1 2 0 0 20 1 2070.1473 P28331;B4DJ81 P28331 519 538 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2;3 1.5999E-10 88.019 By MS/MS By matching By MS/MS By matching By matching 3 1 1 1 1 0.84657 0.82587 18.591 6 Median 0.7779 0.79835 8.0295 2 0 Median 1.2388 1.1378 NaN 1 0 Median 0.62035 0.65925 NaN 1 0 Median 0.94743 0.92298 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86934 0.80719 NaN 1 0 Median 33982000 19953000 14030000 18633000 10822000 7810600 1990000 832420 1157500 13103000 8176300 4926500 176570 82152 94418 0 0 0 80513 40011 40502 14128 2165 14702 72144;72145;72146;72147;72148;72149;72150 73201;73202;73203;73204;73205;73206 73206 6 IASSVTAGVASSLSEK ICEPPINGSSTPNPKIASSVTAGVASSLSE ASSVTAGVASSLSEKIADSIGNNRQNAPLT K I A E K I 3 0 0 0 0 0 1 1 0 1 1 1 0 0 0 5 1 0 0 2 0 0 16 0 1505.7937 Q8NHV4 Q8NHV4 555 570 NEDD1 Protein NEDD1 yes yes 2 0.026736 36.847 By MS/MS 1 1.3298 1.414 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3298 1.414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715400 1679500 2035900 0 0 0 0 0 0 3715400 1679500 2035900 0 0 0 0 0 0 0 0 0 14129 3446 14703 72151 73207 73207 0 IASWADLVNAHVVPGSGVVK IGNTVKKQYEGGIFKIASWADLVNAHVVPG DLVNAHVVPGSGVVKGLQEVGLPLHRGCLL K I A V K G 3 0 1 1 0 0 0 2 1 1 1 1 0 0 1 2 0 1 0 5 0 0 20 0 2018.0949 P11172 P11172 333 352 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 3 0.058758 7.8971 By MS/MS By matching By matching By matching 1 1 1 1 1.0186 0.90085 65.238 4 Median 1.0175 0.93858 NaN 1 0 Median 1.0198 0.86464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5471 2.4435 NaN 1 0 Median 0.61452 0.50997 NaN 1 0 Median 39180000 19558000 19622000 24528000 13236000 11292000 10134000 4674200 5459300 0 0 0 0 0 0 1777800 482070 1295800 2740400 1165300 1575100 14130 1953 14704 72152;72153;72154;72155 73208 73208 1 IATANMLGIR EERERNNQNPWTFERIATANMLGIRKVLSP WTFERIATANMLGIRKVLSPYDLTHKGKYW R I A I R K 2 1 1 0 0 0 0 1 0 2 1 0 1 0 0 0 1 0 0 0 0 0 10 0 1058.5906 Q9NX20 Q9NX20 218 227 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 2 0.0011606 67.993 By MS/MS 1 1.7246 1.4584 NaN 1 Median NaN NaN NaN 0 0 Median 1.7246 1.4584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3830800 1379400 2451500 0 0 0 3830800 1379400 2451500 0 0 0 0 0 0 0 0 0 0 0 0 14131 4155 14705 72156 73209 73209 1 IATEKDFLEAVNK VCTEAGMFAIRARRKIATEKDFLEAVNKVI RKIATEKDFLEAVNKVIKSYAKFSATPRYM K I A N K V 2 0 1 1 0 0 2 0 0 1 1 2 0 1 0 0 1 0 0 1 0 0 13 1 1476.7824 P35998 P35998 403 415 PSMC2 26S protease regulatory subunit 7 yes yes 2;3 0.0011394 90.108 By MS/MS 2 1.132 1.08 NaN 1 Median 1.132 1.08 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14130000 6355300 7775100 14130000 6355300 7775100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14132 2253 14706 72157;72158 73210;73211 73210 2 IATFPGMWER EVYEWLVYSGNKHLKIATFPGMWERTITIG NKHLKIATFPGMWERTITIGSAGKTFSVTG K I A E R T 1 1 0 0 0 0 1 1 0 1 0 0 1 1 1 0 1 1 0 0 0 0 10 0 1206.5856 Q6YP21 Q6YP21 262 271 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes yes 2 0.010105 44.349 By MS/MS By matching By matching By matching 2 1 1 1 1.3776 1.3261 95.612 5 Median 1.2568 1.2367 9.8801 2 0 Median 2.9248 2.6125 NaN 1 0 Median 1.5898 1.8785 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.20574 0.22036 NaN 1 0 Median NaN NaN NaN 0 0 Median 5053400 2381500 2671900 3000500 1267500 1733000 295410 54094 241310 713380 299200 414180 0 0 0 1044200 760800 283370 0 0 0 14133 3196 14707 72159;72160;72161;72162;72163 73212;73213 73212 2 IATGHGQQGVTQVVLK SGTGAPAKIITAVPKIATGHGQQGVTQVVL ATGHGQQGVTQVVLKGAPGQPGTILRTVPM K I A L K G 1 0 0 0 0 3 0 3 1 1 1 1 0 0 0 0 2 0 0 3 0 0 16 0 1634.9104 A6NEM2;P51610 A6NEM2 821 836 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2;3 1.8359E-10 161.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 7 8 3 3 1.1359 1.0554 19.674 31 Median 1.1534 1.1446 16.078 5 0 Median 1.256 1.0831 18.724 5 1 Median 0.93332 0.99679 25.758 7 0 Median 1.1351 1.0024 10.224 8 0 Median 1.0398 1.0905 6.1649 3 0 Median 1.1658 0.99841 33.672 3 0 Median 352830000 165510000 187320000 24327000 11399000 12928000 35420000 15604000 19817000 173260000 85221000 88042000 74613000 32921000 41692000 24468000 10954000 13514000 20737000 9413000 11324000 14134 509;2438 14708 72164;72165;72166;72167;72168;72169;72170;72171;72172;72173;72174;72175;72176;72177;72178;72179;72180;72181;72182;72183;72184;72185;72186;72187;72188;72189;72190;72191;72192;72193;72194 73214;73215;73216;73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229;73230;73231;73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242;73243;73244;73245;73246;73247;73248;73249;73250 73224 36 IATGQIAGVDK TDCVKCLAIHPDKIRIATGQIAGVDKDGRP DKIRIATGQIAGVDKDGRPLQPHVRVWDSV R I A D K D 2 0 0 1 0 1 0 2 0 2 0 1 0 0 0 0 1 0 0 1 0 0 11 0 1071.5924 Q9HC35;B5MBZ0 Q9HC35 324 334 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 0.00096639 61.65 By matching By matching By matching By MS/MS 1 3 1 1 1.2976 1.1095 24.016 6 Median 0.91522 0.90376 NaN 1 0 Median 1.4957 1.3166 13.675 3 0 Median 0.67325 0.71673 NaN 1 0 Median 1.4078 1.1789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11765000 5664500 6100400 1832300 980950 851310 7328400 3477300 3851100 1611500 802670 808810 992790 403570 589220 0 0 0 0 0 0 14135 4024 14709 72195;72196;72197;72198;72199;72200 73251 73251 1 IATGQIAGVDKDGRPLQPHVR TDCVKCLAIHPDKIRIATGQIAGVDKDGRP AGVDKDGRPLQPHVRVWDSVTLSTLQIIGL R I A V R V 2 2 0 2 0 2 0 3 1 2 1 1 0 0 2 0 1 0 0 2 0 0 21 2 2227.2185 Q9HC35;B5MBZ0 Q9HC35 324 344 EML4 Echinoderm microtubule-associated protein-like 4 yes no 4;5 4.9616E-12 72.644 By MS/MS By matching By matching By MS/MS 4 2 2 3 0.81818 0.8895 33.67 11 Median 0.66004 0.6728 36.734 4 0 Median 0.91786 0.93869 35.399 2 0 Median 0.72296 0.85066 6.3143 2 0 Median 0.947 0.94954 33.339 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51187000 28146000 23041000 15395000 9693000 5701600 15399000 8281600 7117500 6644700 3438800 3205900 13748000 6732200 7016100 0 0 0 0 0 0 14136 4024 14710 72201;72202;72203;72204;72205;72206;72207;72208;72209;72210;72211 73252;73253;73254;73255 73255 4 IATGSFLK APQCEMIPIEWVCRRIATGSFLKRNPGVKE IEWVCRRIATGSFLKRNPGVKEGYKFYPPK R I A L K R 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 1 0 0 0 0 0 8 0 835.48035 P22234;E9PBS1;D6RF62 P22234 103 110 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0094683 60.76 By MS/MS By MS/MS By matching By matching By matching 3 3 1 2 1 1.3651 1.1561 11.895 10 Median 1.2502 1.1513 4.492 3 0 Plateau 1.371 1.2264 4.1461 3 0 Plateau 1.4005 1.3805 NaN 1 0 Median 1.163 1.009 21.547 2 0 Median NaN NaN NaN 0 0 Median 1.3701 1.1811 NaN 1 0 Median 66493000 28971000 37521000 23019000 10340000 12679000 33370000 14331000 19040000 5072800 1864700 3208100 4591900 2268100 2323800 0 0 0 438600 167800 270800 14137 909 14711 72212;72213;72214;72215;72216;72217;72218;72219;72220;72221 73256;73257;73258;73259;73260;73261;73262 73256 7 IATLGYLPTQQDVLR QLSDSAKYYLTDVDRIATLGYLPTQQDVLR IATLGYLPTQQDVLRVRVPTTGIIEYPFDL R I A L R V 1 1 0 1 0 2 0 1 0 1 3 0 0 0 1 0 2 0 1 1 0 0 15 0 1686.9305 P29992;K7EL62;A0A087WVZ3 P29992 167 181 GNA11 Guanine nucleotide-binding protein subunit alpha-11 yes no 2 0.00023797 72.006 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.94826 0.93981 27.2 4 Median 0.86915 0.87086 NaN 1 0 Median 0.69095 0.60291 NaN 1 0 Median 1.0346 1.1213 NaN 1 0 Median 1.1585 1.0142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52967000 27155000 25813000 35423000 18660000 16762000 9913400 4912700 5000700 5622500 2660500 2961900 2008900 921360 1087500 0 0 0 0 0 0 14138 2176 14712 72222;72223;72224;72225 73263;73264;73265;73266;73267;73268 73263 6 IATPEEVR EGLTASGSGDVMRRRIATPEEVRLPLQHGW GDVMRRRIATPEEVRLPLQHGWRREVRIKK R I A V R L 1 1 0 0 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 913.4869 J3KPG5;F8VU39;Q9UIF9;H0YHQ7 J3KPG5 516 523 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.057967 52.716 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14139 1065 14713 72226 73269 73269 1 IATSLDGFDVASVQQQR WADNHLPLTDAELARIATSLDGFDVASVQQ TSLDGFDVASVQQQRQEQSYFVRLGSLSER R I A Q R Q 2 1 0 2 0 3 0 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 17 0 1833.9221 O60664;K7ERZ3 O60664 214 230 PLIN3 Perilipin-3 yes no 2 5.9682E-12 141.73 By MS/MS By matching By MS/MS By matching 3 3 2 1 1.3091 1.1137 34.503 9 Median 0.81901 0.78823 43.033 3 1 Median 1.3091 1.1137 4.8351 3 0 Median 1.3993 1.4641 53.427 2 1 Median 1.5834 1.3447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45229000 22502000 22727000 38766000 19625000 19141000 941160 439240 501920 5400700 2389300 3011400 121060 48546 72517 0 0 0 0 0 0 14140 1624 14714 72227;72228;72229;72230;72231;72232;72233;72234;72235 73270;73271;73272;73273;73274;73275;73276 73273 7 IATSLFESGINWGR HLQPTAENAYEYFTKIATSLFESGINWGRV KIATSLFESGINWGRVVALLGFGYRLALHV K I A G R V 1 1 1 0 0 0 1 2 0 2 1 0 0 1 0 2 1 1 0 0 0 0 14 0 1549.7889 A0A0A0MRG8;Q16611 A0A0A0MRG8 94 107 BAK1 Bcl-2 homologous antagonist/killer yes no 2 0.0022275 44.188 By MS/MS 1 1.1983 1.1302 NaN 1 Median 1.1983 1.1302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3554500 1229400 2325100 3554500 1229400 2325100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14141 159 14715 72236 73277;73278 73277 2 IATTTASAATAAAIGATPR KASPNTRSGTRRSPRIATTTASAATAAAIG TASAATAAAIGATPRAKGKAKH________ R I A P R A 8 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 5 0 0 0 0 0 19 0 1714.9214 A0A087WY61;Q14980 Q14980 2090 2108 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.7526E-20 159 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 6 4 4 3 0.84306 0.78999 20.657 18 Median NaN NaN NaN 0 0 Median 0.87552 0.73723 NaN 1 0 Median 0.79025 0.81642 9.2934 6 0 Median 1.0319 0.82341 38.277 4 0 Median 0.73409 0.74517 11.012 4 0 Median 0.97872 0.76268 21.311 3 0 Median 274720000 150230000 124490000 0 0 0 1026900 545260 481660 165930000 89372000 76556000 3707600 1669300 2038300 98628000 56002000 42626000 5428200 2642700 2785400 14142 2905;77 14716 72237;72238;72239;72240;72241;72242;72243;72244;72245;72246;72247;72248;72249;72250;72251;72252;72253;72254 73279;73280;73281;73282;73283;73284;73285;73286;73287;73288;73289;73290;73291;73292;73293;73294;73295;73296;73297;73298;73299 73280 21 IAVAAASKPAVEIK EELLKVLGVNVMLRKIAVAAASKPAVEIKQ KIAVAAASKPAVEIKQEGDTFYIKTSTTVR K I A I K Q 5 0 0 0 0 0 1 0 0 2 0 2 0 0 1 1 0 0 0 2 0 0 14 1 1366.8184 P29373;Q5SYZ4 P29373 32 45 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2;3 7.0384E-08 157.03 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.69508 0.70272 40.436 9 Median 0.69185 0.67319 14.1 4 0 Median 1.8463 1.6006 1.0375 2 0 Median 0.63508 0.64521 5.6626 2 1 Median 1.4404 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 170770000 78664000 92110000 69414000 40480000 28935000 87338000 29877000 57461000 13478000 8125700 5352600 543140 181200 361940 0 0 0 0 0 0 14143 2171 14717 72255;72256;72257;72258;72259;72260;72261;72262;72263 73300;73301;73302;73303;73304;73305;73306;73307;73308;73309;73310 73301 11 IAVAAQNCYK PTAYIDFARQKLDPKIAVAAQNCYKVTNGA KLDPKIAVAAQNCYKVTNGAFTGEISPGMI K I A Y K V 3 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 10 0 1136.5648 P60174 P60174 97 106 TPI1 Triosephosphate isomerase yes yes 2 3.4178E-05 141.78 By MS/MS By MS/MS 1 4 1.1827 1.0265 28.31 5 Median 1.1827 1.1042 NaN 1 0 Median 1.0774 0.92102 29.409 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36290000 16162000 20129000 12523000 5891700 6631500 23767000 10270000 13497000 0 0 0 0 0 0 0 0 0 0 0 0 14144 2523 14718 72264;72265;72266;72267;72268 73311;73312;73313;73314;73315 73314 5 IAVAHNGELVNAAR LENCQPFVVETLHGKIAVAHNGELVNAARL KIAVAHNGELVNAARLRKKLLRHGIGLSTS K I A A R L 4 1 2 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 2 0 0 14 0 1433.7739 Q06203;D6RCC8 Q06203 117 130 PPAT Amidophosphoribosyltransferase yes no 2 6.5062E-05 84.17 By MS/MS 2 1.2859 1.26 27.696 2 Median 1.2859 1.26 27.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6018600 2641700 3376900 6018600 2641700 3376900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14145 2722 14719 72269;72270 73316;73317 73316 2 IAVAVLEETTR HVSRSSTPRESPCGKIAVAVLEETTRERTD PCGKIAVAVLEETTRERTDVIQGDDVADAT K I A T R E 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1200.6714 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 2467 2477 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2 0.00011206 140.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 2 2 1.1117 1.0246 14.602 14 Median 1.4629 1.376 NaN 1 1 Median 1.3128 1.1019 8.2538 2 0 Median 1.026 1.0738 5.9226 3 0 Plateau 1.1574 1.0747 16.403 4 1 Median 0.90391 0.9537 21.211 2 1 Median 1.1492 0.94891 8.8307 2 0 Median 119540000 54885000 64660000 8893200 3492700 5400500 12860000 5148200 7711600 82377000 39129000 43248000 6634900 2872500 3762400 6431800 3194500 3237300 2347600 1048300 1299300 14146 2401;525 14720 72271;72272;72273;72274;72275;72276;72277;72278;72279;72280;72281;72282;72283;72284 73318;73319;73320;73321;73322;73323;73324;73325;73326;73327;73328;73329;73330;73331;73332;73333;73334;73335;73336 73319 19 IAVAVLEETTRER HVSRSSTPRESPCGKIAVAVLEETTRERTD GKIAVAVLEETTRERTDVIQGDDVADATSE K I A E R T 2 2 0 0 0 0 3 0 0 1 1 0 0 0 0 0 2 0 0 2 0 0 13 1 1485.8151 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 2467 2479 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 3 1.1166E-05 124.86 By MS/MS 1 0.9612 1.0564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9612 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6351600 3472500 2879100 0 0 0 0 0 0 6351600 3472500 2879100 0 0 0 0 0 0 0 0 0 14147 2401;525 14721 72285 73337 73337 1 IAVEAQNKYER SNEQQARRDCQEQAKIAVEAQNKYERELML EQAKIAVEAQNKYERELMLHAADVEALQAA K I A E R E 2 1 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 11 1 1319.6834 P12270 P12270 1074 1084 TPR Nucleoprotein TPR yes yes 2;3 4.4406E-05 104.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 4 1 2 1.1331 1.1448 10.622 18 Median 1.1397 1.1643 7.4138 4 0 Median 1.1395 1.1017 20.065 3 0 Median 0.90809 1.0857 7.4254 4 0 Median 1.2902 1.2324 4.7771 4 0 Median 1.0845 1.226 NaN 1 0 Median 1.2134 1.0779 16.439 2 0 Median 52628000 24156000 28472000 7757900 3285700 4472100 11004000 5128300 5875800 18974000 9384300 9589700 4351600 1962100 2389500 3672100 1710600 1961500 6868600 2684800 4183700 14148 1978 14722 72286;72287;72288;72289;72290;72291;72292;72293;72294;72295;72296;72297;72298;72299;72300;72301;72302;72303 73338;73339;73340;73341;73342;73343;73344;73345;73346;73347;73348;73349;73350;73351;73352;73353;73354;73355;73356;73357;73358;73359;73360;73361 73360 24 IAVEFLR FLPQVDSAVVAEFGRIAVEFLRRGANPKIY AVVAEFGRIAVEFLRRGANPKIYEGAARKL R I A L R R 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 846.49634 Q86X83;F8WBW1;F8WC41 Q86X83 30 36 COMMD2 COMM domain-containing protein 2 yes no 2 0.0083653 86.086 By MS/MS By matching By matching 3 2 1 1.2251 1.1645 12.413 6 Median 1.0812 1.0748 12.386 3 0 Median 1.3987 1.2011 0.46689 2 0 Median 1.3394 1.2659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9832000 4348800 5483200 6403300 3082800 3320500 1097800 458210 639610 2330900 807830 1523100 0 0 0 0 0 0 0 0 0 14149 1094 14723 72304;72305;72306;72307;72308;72309 73362 73362 1 IAVEPVNPSELPK QIFRPLKFNTTSVIKIAVEPVNPSELPKML IKIAVEPVNPSELPKMLDGLRKVNKSYPSL K I A P K M 1 0 1 0 0 0 2 0 0 1 1 1 0 0 3 1 0 0 0 2 0 0 13 0 1391.766 Q15029 Q15029 590 602 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 2.7399E-06 121.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 3 1 0.66917 0.63585 18.946 12 Median 0.70344 0.67661 NaN 1 0 Median 0.81728 0.69302 NaN 1 0 Median 0.55212 0.59584 4.7249 3 0 Median 0.83157 0.72743 33.794 3 0 Median 0.62215 0.6321 4.2953 3 0 Plateau 0.71308 0.59315 NaN 1 0 Median 146070000 86183000 59883000 28532000 16143000 12389000 7866400 4087200 3779300 53298000 32836000 20462000 11347000 6098600 5248000 42563000 25647000 16916000 2459800 1370800 1088900 14150 2917 14724 72310;72311;72312;72313;72314;72315;72316;72317;72318;72319;72320;72321 73363;73364;73365;73366;73367;73368;73369;73370;73371;73372;73373;73374;73375;73376;73377;73378;73379;73380;73381;73382;73383 73382 21 IAVGSDADLVIWDPDSVK TNAAKVFNLYPRKGRIAVGSDADLVIWDPD GSDADLVIWDPDSVKTISAKTHNSSLEYNI R I A V K T 2 0 0 4 0 0 0 1 0 2 1 1 0 0 1 2 0 1 0 3 0 0 18 0 1898.9626 Q16555;A0A1C7CYX9 Q16555 401 418 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.0002122 43.991 By MS/MS 1 0.75941 0.73209 NaN 1 Median 0.75941 0.73209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2506100 1524400 981750 2506100 1524400 981750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14151 328 14725 72322 73384 73384 1 IAVHCTVR ARYTVRSFGIRRNEKIAVHCTVRGAKAEEI GIRRNEKIAVHCTVRGAKAEEILEKGLKVR K I A V R G 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 954.50692 P62913;Q5VVC8 P62913 68 75 RPL11 60S ribosomal protein L11 yes no 2 0.012861 54.157 By matching By MS/MS 1 1 1.3033 1.1507 2.2606 2 Median 1.2474 1.1692 NaN 1 0 Median 1.3617 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1449600 641770 807800 323090 165150 157940 1126500 476620 649860 0 0 0 0 0 0 0 0 0 0 0 0 14152 2609 14726 72323;72324 73385 73385 1 IAVHPDYQGMGYGSR QDPDFGGLSGGRVVRIAVHPDYQGMGYGSR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC R I A S R A 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 1 0 0 2 1 0 0 15 0 1649.762 Q9H0A0;A0A087WV29 Q9H0A0 629 643 NAT10 N-acetyltransferase 10 yes no 2;3 8.9094E-10 118.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 8 6 4 4 1.0297 0.94132 22.341 29 Median 1.0731 1.0585 2.1772 2 0 Median 0.94106 0.80069 20.758 5 0 Median 0.85622 0.91601 12.734 8 2 Median 1.1342 0.96228 18.491 6 0 Median 1.1772 1.2112 10.999 4 0 Median 1.0708 0.90718 28.833 4 1 Median 298640000 148570000 150070000 9956100 4927700 5028400 17923000 9053700 8869400 173910000 91626000 82289000 41058000 17763000 23295000 44469000 19664000 24805000 11315000 5535100 5779600 14153 3921 14727;14728 72325;72326;72327;72328;72329;72330;72331;72332;72333;72334;72335;72336;72337;72338;72339;72340;72341;72342;72343;72344;72345;72346;72347;72348;72349;72350;72351;72352;72353 73386;73387;73388;73389;73390;73391;73392;73393;73394;73395;73396;73397;73398;73399;73400;73401;73402;73403;73404;73405;73406;73407;73408 73393 1849 22 IAVMELFRPK AEGLRPVKEVGMYGKIAVMELFRPKGESKD GMYGKIAVMELFRPKGESKDLLFILTAKYN K I A P K G 1 1 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 10 1 1202.6845 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8;F5GYG8;F5H198 Q16531 61 70 DDB1 DNA damage-binding protein 1 yes no 2;3 0.00020561 89.698 By MS/MS By MS/MS By matching 6 5 1 0.84228 0.9378 30.189 12 Median 1.0457 1.0533 24.635 6 0 Median NaN NaN NaN 0 0 Median 0.73318 0.83078 34.065 5 0 Median NaN NaN NaN 0 0 Median 0.83491 0.94128 NaN 1 0 Median NaN NaN NaN 0 0 Median 57534000 31158000 26376000 20901000 10192000 10709000 0 0 0 36083000 20692000 15392000 0 0 0 549170 273410 275750 0 0 0 14154 2985 14729 72354;72355;72356;72357;72358;72359;72360;72361;72362;72363;72364;72365 73409;73410;73411;73412;73413;73414;73415;73416;73417;73418;73419 73414 11 IAVNIALER RAKGLKDIRIDEEVKIAVNIALERFRYGDQ IDEEVKIAVNIALERFRYGDQREMEFPSSL K I A E R F 2 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 997.59203 Q9H6S0;D6RA70;D6RF50 Q9H6S0 47 55 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.00055412 114.89 By MS/MS By matching By matching 1 2 1 1.2492 1.2445 69.608 4 Median 1.1012 1.045 NaN 1 0 Median 0.76943 0.7186 102.37 2 0 Median 1.4171 1.5519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9199200 4516300 4682900 5704600 2930800 2773800 1126000 624590 501420 2368500 960870 1407700 0 0 0 0 0 0 0 0 0 14155 3977 14730 72366;72367;72368;72369 73420 73420 1 IAVSNLHK TLTTKHPDYAILAARIAVSNLHKETKKVFS YAILAARIAVSNLHKETKKVFSDVMEDLYN R I A H K E 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 880.51305 P23921 P23921 81 88 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.0025916 124.59 By MS/MS By MS/MS 1 1 1.2038 1.1104 1.2097 2 Median 1.1506 1.12 NaN 1 0 Median 1.2595 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14288000 6334800 7953700 2891200 1306000 1585100 11397000 5028800 6368500 0 0 0 0 0 0 0 0 0 0 0 0 14156 2121 14731 72370;72371 73421;73422;73423 73423 3 IAVVGEGR AGKIKDIAWTEDSKRIAVVGEGREKFGAVF WTEDSKRIAVVGEGREKFGAVFLWDSGSSV R I A G R E 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 799.4552 O75083;D6RD66 O75083 117 124 WDR1 WD repeat-containing protein 1 yes no 2 0.0059586 73.26 By MS/MS By MS/MS 1 3 1.2667 1.1649 55.423 4 Median 1.2754 1.2465 NaN 1 0 Median 1.2581 1.0886 67.834 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15170000 6814900 8354700 4389000 2127400 2261600 10781000 4687600 6093100 0 0 0 0 0 0 0 0 0 0 0 0 14157 1643 14732 72372;72373;72374;72375 73424;73425;73426;73427 73427 4 IAVVTADGK NKTLNIRTSPGSLDKIAVVTADGKLALNQI PGSLDKIAVVTADGKLALNQISQISMKSPQ K I A G K L 2 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 9 0 872.49673 Q96E11;X6RDS5 Q96E11 119 127 MRRF Ribosome-recycling factor, mitochondrial yes no 2 0.0016231 79.474 By MS/MS 1 0.99655 0.93485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99655 0.93485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9600300 4650800 4949500 0 0 0 0 0 0 9600300 4650800 4949500 0 0 0 0 0 0 0 0 0 14158 3631 14733 72376 73428;73429 73428 2 IAVYSCPFDGMITETK KKETEGDVTSVKDAKIAVYSCPFDGMITET AVYSCPFDGMITETKGTVLIKTAEELMNFS K I A T K G 1 0 0 1 1 0 1 1 0 2 0 1 1 1 1 1 2 0 1 1 0 0 16 0 1830.8532 P50990 P50990 239 254 CCT8 T-complex protein 1 subunit theta yes yes 2 0.00013645 57.836 By MS/MS 2 1.1189 1.0727 12.255 2 Median 1.1189 1.0727 12.255 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7163400 4016900 3146500 7163400 4016900 3146500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14159 2423 14734 72377;72378 73430;73431;73432;73433 73430 4 IAWALNK KLSSGSYKIGSKVIKIAWALNKGVKTEYKQ KIGSKVIKIAWALNKGVKTEYKQFWDVDLG K I A N K G 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 7 0 814.47012 A0A0A0MT33;Q9UPN6;O95104 A0A0A0MT33 624 630 SCAF8;SCAF4 Protein SCAF8;Splicing factor, arginine/serine-rich 15 no no 2 0.011345 80.377 By MS/MS By matching By matching 1 2 1 1.2039 1.0453 6.9457 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91072 0.97954 NaN 1 0 Median 1.2649 1.1048 6.6353 2 0 Median NaN NaN NaN 0 0 Median 1.2366 1.0365 NaN 1 0 Median 7964100 4015300 3948800 0 0 0 0 0 0 6843500 3483100 3360400 804610 386880 417730 0 0 0 315950 145280 170670 14160 186;1745 14735 72379;72380;72381;72382 73434;73435 73434 2 IAWALSR AYEDKNDIPKEKDEKIAWALSRKATLELTH IPKEKDEKIAWALSRKATLELTHNWGTEDD K I A S R K 2 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 7 0 815.46537 Q04760 Q04760 89 95 GLO1 Lactoylglutathione lyase yes yes 2 0.00040312 143.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1.2982 1.167 8.0813 10 Median 1.1115 1.0593 4.8749 3 0 Median 1.4261 1.1945 6.627 4 0 Median 1.2437 1.1946 NaN 1 0 Median 1.3043 1.0783 NaN 1 0 Median 1.2921 1.2899 NaN 1 0 Median NaN NaN NaN 0 0 Median 319070000 145650000 173430000 220010000 106090000 113920000 73733000 28973000 44760000 18345000 7935600 10410000 1300500 516610 783850 5684100 2131800 3552300 0 0 0 14161 2712 14736 72383;72384;72385;72386;72387;72388;72389;72390;72391;72392 73436;73437;73438;73439;73440;73441;73442;73443;73444;73445;73446;73447;73448;73449;73450;73451;73452 73437 17 IAWPPPTELGSSGSALEEGIK QQEKEDKPAETKKLRIAWPPPTELGSSGSA TELGSSGSALEEGIKMSKPKWPPEDEISKP R I A I K M 2 0 0 0 0 0 3 3 0 2 2 1 0 0 3 3 1 1 0 0 0 0 21 0 2138.0895 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 530 550 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0012078 28.632 By MS/MS By matching 1 2 0.69232 0.6133 17.4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45832 0.48746 NaN 1 0 Median 0.72828 0.6485 7.8916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2111300 1412800 698550 0 0 0 0 0 0 1781300 1204900 576390 330000 207850 122160 0 0 0 0 0 0 14162 4273 14737 72393;72394;72395 73453 73453 1 IAWTHITIPESLR YLEIFDERAFSMDDRIAWTHITIPESLRQG DRIAWTHITIPESLRQGKVEDKWYSLSGRQ R I A L R Q 1 1 0 0 0 0 1 0 1 3 1 0 0 0 1 1 2 1 0 0 0 0 13 0 1535.846 Q9H0E2;E7EN89;F2Z2Y8;E9PP67;E9PQ25 Q9H0E2 131 143 TOLLIP Toll-interacting protein yes no 3 0.00043267 51.211 By MS/MS By matching By matching 2 2 1 1.0797 0.90914 31.067 5 Median 0.71082 0.67074 18.647 2 0 Median 1.3723 1.1658 21.249 2 0 Median NaN NaN NaN 0 0 Median 1.0797 0.90914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8299200 4565000 3734200 6186500 3638600 2548000 1992900 874850 1118000 0 0 0 119820 51603 68217 0 0 0 0 0 0 14163 3925 14738 72396;72397;72398;72399;72400 73454;73455 73454 2 IAYEFVEMK YYMPAIAGCREAIKRIAYEFVEMKAKEGVV REAIKRIAYEFVEMKAKEGVVYVEVRYSPH R I A M K A 1 0 0 0 0 0 2 0 0 1 0 1 1 1 0 0 0 0 1 1 0 0 9 0 1128.5525 F5GXW0;P00813;F5GWI4 F5GXW0 82 90 ADA Adenosine deaminase yes no 2 0.039605 33.797 By MS/MS By matching 1 1 1.1648 1.064 9.8448 2 Median 1.0623 0.99248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2773 1.1407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6286800 3984500 2302300 6251800 3967600 2284100 0 0 0 0 0 0 35040 16906 18134 0 0 0 0 0 0 14164 1008 14739 72401;72402 73456 73456 1 IAYPPGVK KPATALCGVVSADGKIAYPPGVKEITDKIT VVSADGKIAYPPGVKEITDKITTDEMIKRL K I A V K E 1 0 0 0 0 0 0 1 0 1 0 1 0 0 2 0 0 0 1 1 0 0 8 0 843.48544 Q29RF7 Q29RF7 23 30 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.026009 62.714 By MS/MS 1 0.62725 0.67995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62725 0.67995 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4050400 2345400 1705000 0 0 0 0 0 0 4050400 2345400 1705000 0 0 0 0 0 0 0 0 0 14165 3003 14740 72403 73457 73457 1 IAYQLAVEAESEQK PEHRFELALQLGELKIAYQLAVEAESEQKW KIAYQLAVEAESEQKWKQLAELAISKCQFG K I A Q K W 3 0 0 0 0 2 3 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1577.7937 P35606 P35606 656 669 COPB2 Coatomer subunit beta yes yes 2 0.036074 39.917 By MS/MS 1 0.79737 0.66959 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79737 0.66959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1364200 721560 642640 0 0 0 0 0 0 0 0 0 1364200 721560 642640 0 0 0 0 0 0 14166 2246 14741 72404 73458 73458 1 IAYQLAVEAESEQKWK PEHRFELALQLGELKIAYQLAVEAESEQKW AYQLAVEAESEQKWKQLAELAISKCQFGLA K I A W K Q 3 0 0 0 0 2 3 0 0 1 1 2 0 0 0 1 0 1 1 1 0 0 16 1 1891.968 P35606 P35606 656 671 COPB2 Coatomer subunit beta yes yes 3 0.00087679 36.597 By MS/MS 1 0.88118 0.96008 NaN 1 Median 0.88118 0.96008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10300000 5995200 4304300 10300000 5995200 4304300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14167 2246 14742 72405 73459 73459 1 IAYTFAR EVTGQLGEVMKESARIAYTFARAFLMQHAP EVMKESARIAYTFARAFLMQHAPANDYLVT R I A A R A 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 7 0 840.44939 K7EKE6;P36776;K7EJE8;K7ERR6 K7EKE6 702 708 LONP1 Lon protease homolog, mitochondrial yes no 2 0.0014903 114.54 By MS/MS By MS/MS By matching 1 1 1 1.6996 1.4508 19.138 3 Median NaN NaN NaN 0 0 Median 1.9224 1.6091 NaN 1 0 Median 1.0434 1.1105 NaN 1 1 Median 1.6996 1.4508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17728000 7066200 10662000 0 0 0 9646400 3566500 6079900 7130000 3087000 4043000 951840 412690 539150 0 0 0 0 0 0 14168 1370 14743 72406;72407;72408 73460;73461 73460 2 ICANHYISPDMK SGKIRLLMRREQVLKICANHYISPDMKLTP VLKICANHYISPDMKLTPNAGSDRSFVWHA K I C M K L 1 0 1 1 1 0 0 0 1 2 0 1 1 0 1 1 0 0 1 0 0 0 12 0 1447.6588 P49792 P49792 1242 1253 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.0020745 38.3 By matching By MS/MS 1 1 0.81699 0.79461 3.1678 2 Median NaN NaN NaN 0 0 Median 0.93002 0.81261 NaN 1 0 Median 0.7177 0.77701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9157200 4763900 4393400 0 0 0 5592700 2628800 2963900 3564500 2135100 1429500 0 0 0 0 0 0 0 0 0 14169 2401 14744 72409;72410 73462 73462 1 ICGDIHGQYYDLLR FLSQPILLELEAPLKICGDIHGQYYDLLRL KICGDIHGQYYDLLRLFEYGGFPPESNYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 0 0 2 0 0 0 14 0 1721.8195 P62136;E9PMD7;F5H1L6;F5H037;F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 P62136 61 74 PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 0.030087 18.596 By MS/MS By matching 1 1 1.1245 1.0501 19.239 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92646 0.91656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3648 1.2032 NaN 1 0 Median 6027400 2849600 3177800 0 0 0 0 0 0 5874700 2773200 3101500 0 0 0 0 0 0 152730 76412 76314 14170 2569;1074 14745 72411;72412 73463;73464 73464 2 ICHQIEYYFGDFNLPR AENGDNEKMAALEAKICHQIEYYFGDFNLP CHQIEYYFGDFNLPRDKFLKEQIKLDEGWV K I C P R D 0 1 1 1 1 1 1 1 1 2 1 0 0 2 1 0 0 0 2 0 0 0 16 0 2070.9622 P05455;E7ERC4;E9PFL9 P05455 17 32 SSB Lupus La protein yes no 3 0.028484 25.866 By MS/MS 1 1.0848 1.0944 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0848 1.0944 NaN 1 1 Median NaN NaN NaN 0 0 Median 1022200 458350 563820 0 0 0 0 0 0 0 0 0 0 0 0 1022200 458350 563820 0 0 0 14171 1867 14746 72413 73465 73465 1 ICLDILK FMTKIYHPNVDKLGRICLDILKDKWSPALQ PNVDKLGRICLDILKDKWSPALQIRTVLLS R I C L K D 0 0 0 1 1 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 7 0 873.49937 P61088;F8VSD4;F8VV71;F8VQQ8 P61088 86 92 UBE2N Ubiquitin-conjugating enzyme E2 N yes no 2 0.018479 62.714 By matching By MS/MS 2 1 1.3033 1.1114 10.119 3 Median NaN NaN NaN 0 0 Median 1.2665 1.0931 2.3427 2 0 Median 1.3286 1.2994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4395900 1804500 2591400 0 0 0 1081600 466450 615120 3314300 1338000 1976300 0 0 0 0 0 0 0 0 0 14172 2544 14747 72414;72415;72416 73466;73467 73466 2 ICLDQQNPLYK CPSPQLIATLKTGRKICLDQQNPLYKKIIK TGRKICLDQQNPLYKKIIKRLLKS______ K I C Y K K 0 0 1 1 1 2 0 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 11 0 1390.6915 CON__P02777 CON__P02777 211 221 yes yes 2 0.00018201 101.64 By matching By MS/MS By MS/MS 1 2 1 0.20251 0.19471 119.6 3 Median 1.1131 1.0915 NaN 1 0 Median 0.13212 0.10964 NaN 1 1 Median 0.20251 0.19471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13215000 10704000 2510500 1780600 827730 952910 4869600 4109300 760360 6564500 5767200 797260 0 0 0 0 0 0 0 0 0 + 14173 747 14748 72417;72418;72419;72420 73468;73469;73470 73468 3 ICNHPGLVEPR GHFVNVLSILVRLQRICNHPGLVEPRHPGS RLQRICNHPGLVEPRHPGSSYVAGPLEYPS R I C P R H 0 1 1 0 1 0 1 1 1 1 1 0 0 0 2 0 0 0 0 1 0 0 11 0 1290.6503 Q96L91 Q96L91 1367 1377 EP400 E1A-binding protein p400 yes yes 3 0.026689 22.474 By matching By MS/MS 1 1 0.35107 0.38717 131.44 2 Median NaN NaN NaN 0 0 Median 0.14092 0.15285 NaN 1 0 Median 0.87461 0.98072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055300 4811200 1244100 0 0 0 5233200 4411200 821980 822120 399960 422160 0 0 0 0 0 0 0 0 0 14174 3700 14749 72421;72422 73471 73471 1 ICPVEFNPNFVAR GSRGFPLRLQATEVRICPVEFNPNFVARMI VRICPVEFNPNFVARMIPKVEWSAFLEAAD R I C A R M 1 1 2 0 1 0 1 0 0 1 0 0 0 2 2 0 0 0 0 2 0 0 13 0 1561.7711 Q9UI30;F5GX77 Q9UI30 32 44 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 0.0034196 44.309 By MS/MS By MS/MS By matching 1 1 1 0.82958 0.8098 8.573 3 Median 0.82958 0.8098 NaN 1 0 Median 0.87143 0.73918 NaN 1 0 Median 0.75725 0.87733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12940000 6628700 6311300 2849400 1518600 1330800 5263100 2757700 2505300 4827400 2352400 2475100 0 0 0 0 0 0 0 0 0 14175 1005 14750 72423;72424;72425 73472;73473 73472 2 ICSWNVDGLR PDQKTSPSGKPATLKICSWNVDGLRAWIKK PATLKICSWNVDGLRAWIKKKGLDWVKEEA K I C L R A 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1218.5815 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V5M0;G3V359;H7C4A8 G3V3M6 64 73 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.014201 59.245 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14176 1112 14751 72426 73474 73474 1 IDAFHYVQLGTAYR IRGLHYDIQKSLLMKIDAFHYVQLGTAYRG KIDAFHYVQLGTAYRGLQPVPDEEVIELYG K I D Y R G 2 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 1 0 2 1 0 0 14 0 1652.8311 Q9H857;C9J036;H7C4G8 Q9H857 133 146 NT5DC2 5-nucleotidase domain-containing protein 2 yes no 3 0.00080533 40.025 By matching By MS/MS 1 1 0.81915 0.8386 2.4492 2 Median 0.85733 0.85325 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78267 0.8242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676800 1782700 1894100 1857000 888720 968240 0 0 0 1819900 894010 925860 0 0 0 0 0 0 0 0 0 14177 3989 14752 72427;72428 73475;73476 73476 2 IDASELSFPFHESILK TTLGLEVAKQSQHDKIDASELSFPFHESIL DASELSFPFHESILKVIEEEWQQVDRQLPS K I D L K V 1 0 0 1 0 0 2 0 1 2 2 1 0 2 1 3 0 0 0 0 0 0 16 0 1831.9356 P42166 P42166 485 500 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 1.6335E-06 89.301 By matching By matching By MS/MS By matching By matching By matching 2 2 2 3 2 3 0.9924 0.87115 15.597 14 Median 0.95324 0.94317 20.239 2 0 Median 1.0382 0.90237 14.358 2 0 Median 0.8295 0.83467 4.4723 2 0 Median 1.0175 0.88436 4.316 3 0 Plateau 0.86564 0.8886 46.859 2 0 Median 1.0587 0.88091 7.3636 3 0 Median 39708000 20017000 19692000 3005100 1509100 1496100 2589800 1299300 1290500 30303000 15261000 15042000 1493600 773770 719830 1334800 708250 626500 981840 465140 516700 14178 2306 14753 72429;72430;72431;72432;72433;72434;72435;72436;72437;72438;72439;72440;72441;72442 73477;73478;73479 73479 3 IDASKNEEDEGHSNSSPR SGGTEGGSAESEGAKIDASKNEEDEGHSNS SKNEEDEGHSNSSPRHSEAATAQREEWKMF K I D P R H 1 1 2 2 0 0 3 1 1 1 0 1 0 0 1 4 0 0 0 0 0 0 18 1 1970.8566 Q14103;D6RAF8;D6RD83 Q14103 68 85 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2;3;4 1.505E-06 65.107 By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 4 7 9 4 0.98959 0.99967 12.8 28 Median 0.97309 1.0407 5.0856 4 0 Median NaN NaN NaN 0 0 Median 0.89 1.0119 14.647 4 0 Median 1.0429 0.99195 9.9415 7 0 Median 0.81514 0.89693 12.123 9 0 Median 1.1821 1.0887 17.09 4 0 Median 74953000 37998000 36954000 2795400 1378900 1416500 0 0 0 2726500 1332900 1393600 6865100 3155000 3710100 60687000 31297000 29389000 1878700 834260 1044500 14179 2854 14754 72443;72444;72445;72446;72447;72448;72449;72450;72451;72452;72453;72454;72455;72456;72457;72458;72459;72460;72461;72462;72463;72464;72465;72466;72467;72468;72469;72470 73480;73481;73482;73483;73484;73485;73486;73487;73488;73489;73490;73491;73492;73493;73494 73489 15 IDASKNEEDEGK SGGTEGGSAESEGAKIDASKNEEDEGKMFI GAKIDASKNEEDEGKMFIGGLSWDTTKKDL K I D G K M 1 0 1 2 0 0 3 1 0 1 0 2 0 0 0 1 0 0 0 0 0 0 12 1 1333.5998 D6RBQ9 D6RBQ9 68 79 HNRNPD yes yes 3 0.003076 37.426 By matching By matching By matching By MS/MS By matching 1 1 1 4 1 0.77096 0.82816 7.5469 8 Median 0.84414 0.78899 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77128 0.84048 NaN 1 0 Median 1.1089 0.98742 NaN 1 0 Median 0.76165 0.80341 4.2188 4 0 Median 0.99468 0.85328 NaN 1 0 Median 3702900 1985900 1717000 134520 66273 68250 0 0 0 87143 41957 45185 113980 56769 57210 3308200 1790200 1518000 59119 30705 28414 14180 816 14755 72471;72472;72473;72474;72475;72476;72477;72478 73495;73496 73495 2 IDASQTEFEK QAVQSQGFINYCQKKIDASQTEFEKNVWSF YCQKKIDASQTEFEKNVWSFLKVNFEDDSR K I D E K N 1 0 0 1 0 1 2 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1166.5455 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 462 471 SEC31A Protein transport protein Sec31A yes no 2 0.00056005 93.111 By MS/MS 1 1.2432 1.0624 NaN 1 Median NaN NaN NaN 0 0 Median 1.2432 1.0624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4996900 2136400 2860500 0 0 0 4996900 2136400 2860500 0 0 0 0 0 0 0 0 0 0 0 0 14181 823 14756 72479 73497;73498 73497 2 IDATSASVLASR ANILKDKDPPIPVAKIDATSASVLASRFDV VAKIDATSASVLASRFDVSGYPTIKILKKG K I D S R F 3 1 0 1 0 0 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 0 1189.6303 P13667;A0A499FI48 P13667 120 131 PDIA4 Protein disulfide-isomerase A4 yes no 2 5.7532E-06 141.95 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 3 1.2394 1.085 52.941 10 Median 1.2707 1.2051 17.355 3 1 Median 1.3353 1.1555 32.568 3 0 Median 1.0146 1.0188 NaN 1 0 Median 1.3755 1.1855 89.802 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 234940000 99747000 135190000 93350000 42999000 50351000 80611000 28348000 52263000 48880000 23049000 25832000 12099000 5351300 6748000 0 0 0 0 0 0 14182 1993 14757 72480;72481;72482;72483;72484;72485;72486;72487;72488;72489;72490;72491 73499;73500;73501;73502;73503;73504;73505;73506;73507;73508;73509;73510 73501 11 IDAVAWNTTPYQLAR KEPRTIKISLPGGQKIDAVAWNTTPYQLAR IDAVAWNTTPYQLARQISSTLADTAVAAQV K I D A R Q 3 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 2 1 1 1 0 0 15 0 1717.8788 Q9BW92;U3KQG0;U3KQ50;Q5T5E9 Q9BW92 71 85 TARS2 Threonine--tRNA ligase, mitochondrial yes no 2 0.00028434 69.01 By MS/MS 1 0.68196 0.65493 NaN 1 Median 0.68196 0.65493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4516500 2555300 1961200 4516500 2555300 1961200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14183 3867 14758 72492 73511;73512 73512 2 IDAVNAETIR LCYNRRIPIPELEARIDAVNAETIREVCTK ELEARIDAVNAETIREVCTKYIYNRSPAIA R I D I R E 2 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1100.5826 O75439;G3V0E4 O75439 442 451 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.00061725 113.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1909 1.0969 15.913 4 Median 0.91131 0.86211 NaN 1 0 Median 1.4372 1.2084 NaN 1 0 Median 1.0242 1.0096 NaN 1 0 Median 1.3847 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63987000 29690000 34297000 20559000 10963000 9595700 13892000 5320300 8571900 12181000 6345000 5835500 17356000 7061300 10294000 0 0 0 0 0 0 14184 1673 14759 72493;72494;72495;72496 73513;73514;73515;73516;73517;73518 73516 4 IDCFSEVPTSVFGEK RISRYLANKCSIASRIDCFSEVPTSVFGEK IDCFSEVPTSVFGEKLREQVEERLSFYETG R I D E K L 0 0 0 1 1 0 2 1 0 1 0 1 0 2 1 2 1 0 0 2 0 0 15 0 1713.792 O00567;A0A494C128;H0YDU4;H0Y653 O00567 382 396 NOP56 Nucleolar protein 56 yes no 2 0.00021584 73.435 By matching By MS/MS By matching 1 2 1 0.96541 0.9092 27.075 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3779 1.4748 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86937 0.86333 10.785 2 1 Median 1.0333 0.8872 NaN 1 0 Median 19390000 10066000 9324200 0 0 0 0 0 0 1113900 494510 619390 0 0 0 18103000 9486100 8616600 173590 85391 88198 14185 1472 14760 72497;72498;72499;72500 73519;73520;73521 73521 3 IDDFPNELEK GRPKRRTRKSINYSKIDDFPNELEKLISQI INYSKIDDFPNELEKLISQIQPEVDRERAV K I D E K L 0 0 1 2 0 0 2 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 10 0 1218.5768 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 397 406 HELLS Lymphoid-specific helicase yes no 2 0.0042827 53.756 By MS/MS By matching 1 1 1.1335 1.1624 29.381 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85861 0.94438 NaN 1 0 Median 1.4964 1.4309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7041100 3846800 3194200 0 0 0 0 0 0 6115900 3409600 2706400 925120 437280 487840 0 0 0 0 0 0 14186 211 14761 72501;72502 73522;73523 73523 2 IDDIFER KNQTLQKEIQGHQPRIDDIFERSQNIVTDS EIQGHQPRIDDIFERSQNIVTDSSSLSAEA R I D E R S 0 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 906.4447 Q01082;A0A087WUZ3 Q01082 1541 1547 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0026716 117.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1.07 1.0133 13.071 10 Median 1.1953 1.122 NaN 1 0 Median 1.3283 1.0944 8.8605 2 0 Median 0.91622 0.99877 NaN 1 0 Median 1.0053 0.87837 4.4972 2 0 Median 1.0803 1.1293 10.04 2 0 Median 1.0574 0.87716 8.2235 2 0 Median 91595000 44340000 47255000 10607000 4636400 5971000 14862000 6575100 8287200 45322000 23134000 22188000 4294300 2024600 2269600 14959000 7196000 7763000 1550300 773710 776570 14187 2681 14762 72503;72504;72505;72506;72507;72508;72509;72510;72511;72512 73524;73525;73526;73527;73528;73529;73530;73531;73532;73533;73534;73535;73536 73526 13 IDDILQTLLDATYK IFYKAIQKRRQSQEKIDDILQTLLDATYKD KIDDILQTLLDATYKDGRPLTDDEVAGMLI K I D Y K D 1 0 0 3 0 1 0 0 0 2 3 1 0 0 0 0 2 0 1 0 0 0 14 0 1620.8611 A0A0C4DFL7;Q16850;H7C0D0 A0A0C4DFL7 284 297 CYP51A1 Lanosterol 14-alpha demethylase yes no 2 0.00037473 72.006 By MS/MS 1 1.2206 1.0528 NaN 1 Median NaN NaN NaN 0 0 Median 1.2206 1.0528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1642100 707200 934900 0 0 0 1642100 707200 934900 0 0 0 0 0 0 0 0 0 0 0 0 14188 227 14763 72513 73537;73538 73537 2 IDDIRKPGESEE QQISLATQMVRMILKIDDIRKPGESEE___ ILKIDDIRKPGESEE_______________ K I D E E - 0 1 0 2 0 0 3 1 0 2 0 1 0 0 1 1 0 0 0 0 0 0 12 2 1386.6627 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 530 541 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 0.0021511 73.067 By MS/MS By MS/MS By matching By matching 3 4 1 1 1.0724 0.95633 19.216 9 Median 1.0724 1.0765 16.261 3 0 Median 1.0857 0.95317 6.9047 4 0 Median 0.86584 0.95608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5421 1.6013 NaN 1 0 Median NaN NaN NaN 0 0 Median 37546000 16740000 20806000 11950000 5593700 6355900 23069000 10223000 12845000 513550 199420 314130 0 0 0 2013700 723040 1290700 0 0 0 14189 2364 14764 72514;72515;72516;72517;72518;72519;72520;72521;72522 73539;73540;73541;73542;73543 73541 5 IDDIVSGHK QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ AVLLLRIDDIVSGHKKKGDDQSRQGGAPDA R I D H K K 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 1 0 0 0 1 0 0 9 0 982.50836 P49368;B4DUR8 P49368 519 527 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00052905 103.56 By MS/MS By MS/MS 1 2 1.248 1.1919 16.467 3 Median 1.248 1.1919 NaN 1 1 Median 1.4124 1.1991 23.283 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37324000 17038000 20286000 5682700 2463300 3219500 31641000 14575000 17066000 0 0 0 0 0 0 0 0 0 0 0 0 14190 2379 14765 72523;72524;72525 73544;73545;73546 73544 3 IDDIVSGHKK QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ VLLLRIDDIVSGHKKKGDDQSRQGGAPDAG R I D K K K 0 0 0 2 0 0 0 1 1 2 0 2 0 0 0 1 0 0 0 1 0 0 10 1 1110.6033 P49368;B4DUR8 P49368 519 528 CCT3 T-complex protein 1 subunit gamma yes no 2 0.0043952 57.96 By MS/MS By MS/MS By matching 1 1 1 1.2085 1.1023 4.3702 3 Plateau 1.1368 1.083 NaN 1 0 Median 1.2555 1.1766 NaN 1 0 Median 1.0344 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4810800 2105900 2705000 1909900 903710 1006200 2815400 1167100 1648300 85496 35085 50412 0 0 0 0 0 0 0 0 0 14191 2379 14766 72526;72527;72528 73547;73548;73549 73548 3 IDDMTAAPMDVR IIRHAEKAPTNIVYKIDDMTAAPMDVRQWV VYKIDDMTAAPMDVRQWVDTDDTSSENTVV K I D V R Q 2 1 0 3 0 0 0 0 0 1 0 0 2 0 1 0 1 0 0 1 0 0 12 0 1333.6006 Q5TEJ7;P15927 Q5TEJ7 98 109 RPA2 Replication protein A 32 kDa subunit yes no 2 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 5 1.102 0.93866 12.251 8 Median 1.0049 0.93797 NaN 1 1 Median 1.3032 1.0873 NaN 1 0 Median 1.1838 1.1721 NaN 1 0 Median 1.0796 0.90039 7.941 5 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32325000 15709000 16616000 7565500 3945900 3619600 4409200 2085400 2323700 4849900 2018200 2831700 15501000 7659400 7841200 0 0 0 0 0 0 14192 2022 14767;14768;14769 72529;72530;72531;72532;72533;72534;72535;72536 73550;73551;73552;73553;73554;73555;73556;73557;73558;73559 73554 808;809 10 IDDPTDSKPEDWDKPEHIPDPDAK DPDASKPEDWDERAKIDDPTDSKPEDWDKP EDWDKPEHIPDPDAKKPEDWDEEMDGEWEP K I D A K K 1 0 0 7 0 0 2 0 1 2 0 3 0 0 5 1 1 1 0 0 0 0 24 2 2759.2562 P27797;K7EJB9;K7EL50 P27797 225 248 CALR Calreticulin yes no 4 0.024836 13.73 By MS/MS By matching 1 1 0.42859 0.4553 0.88058 2 Median 0.47101 0.45814 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38999 0.45247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13758000 8843800 4914400 8210800 5154900 3055800 0 0 0 5547500 3688900 1858600 0 0 0 0 0 0 0 0 0 14193 2157 14770 72537;72538 73560 73560 1 IDDSKEAMER RTGRSRGFAFVYFERIDDSKEAMERANGME VYFERIDDSKEAMERANGMELDGRRIRVDY R I D E R A 1 1 0 2 0 0 2 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1192.5394 Q13595 Q13595 170 179 TRA2A Transformer-2 protein homolog alpha yes yes 2;3 0.004373 70.1 By MS/MS 6 1.035 1.114 5.8621 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.035 1.114 5.8621 4 0 Median NaN NaN NaN 0 0 Median 14151000 4537300 9613600 0 0 0 0 0 0 0 0 0 0 0 0 14151000 4537300 9613600 0 0 0 14194 2828 14771 72539;72540;72541;72542;72543;72544 73561;73562;73563 73562 3 IDDVAALDK AEEAGEENLFIFGMRIDDVAALDKKGYEAK FIFGMRIDDVAALDKKGYEAKEYYEALPEL R I D D K K 2 0 0 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 958.49713 P06737;E9PK47 P06737 716 724 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.0032652 66.299 By matching By MS/MS 1 1 1.5427 1.524 46.918 2 Median 1.9114 2.1236 NaN 1 0 Median 1.2452 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7882300 2763600 5118600 4553800 1257900 3295900 3328500 1505700 1822700 0 0 0 0 0 0 0 0 0 0 0 0 14195 1874 14772 72545;72546 73564;73565 73564 2 IDDVAALDKK AEEAGEENLFIFGMRIDDVAALDKKGYEAK IFGMRIDDVAALDKKGYEAKEYYEALPELK R I D K K G 2 0 0 3 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1086.5921 P06737;E9PK47 P06737 716 725 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.014059 54.982 By MS/MS By MS/MS 1 1 1.1089 1.1208 0.75902 2 Median 1.0673 1.1268 NaN 1 0 Median 1.1522 1.1148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6273200 2832100 3441100 2835300 1397900 1437300 3437900 1434200 2003800 0 0 0 0 0 0 0 0 0 0 0 0 14196 1874 14773 72547;72548 73566;73567 73567 2 IDDVVNTR SALTLATETVRSILKIDDVVNTR_______ TVRSILKIDDVVNTR_______________ K I D T R - 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 930.47706 P50991 P50991 532 539 CCT4 T-complex protein 1 subunit delta yes yes 2 0.0029975 133.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 2 1.1132 0.97848 35.346 10 Median 1.1658 1.1206 5.3058 2 0 Median 1.1202 0.94108 36.518 3 0 Median 1.2521 1.3105 NaN 1 0 Median 1.0082 0.87098 NaN 1 0 Median 1.8776 1.8902 NaN 1 0 Median 0.86358 0.74239 4.298 2 0 Median 65702000 29633000 36069000 21641000 9595700 12045000 33476000 15450000 18026000 3064100 1329900 1734300 1103700 506810 596900 3230900 1332900 1897900 3186400 1417800 1768600 14197 2424 14774 72549;72550;72551;72552;72553;72554;72555;72556;72557;72558 73568;73569;73570;73571;73572;73573;73574;73575;73576;73577;73578;73579;73580;73581;73582;73583;73584;73585 73569 18 IDEAILITWTK LPVGFTFSFPCQQSKIDEAILITWTKRFKA QQSKIDEAILITWTKRFKASGVEGADVVKL K I D T K R 1 0 0 1 0 0 1 0 0 3 1 1 0 0 0 0 2 1 0 0 0 0 11 0 1301.7231 P19367 P19367 163 173 HK1 Hexokinase-1 yes yes 2 0.00019611 105.86 By matching By MS/MS 1 1 1.6536 1.555 33.746 2 Median 1.2151 1.2249 NaN 1 0 Median 2.2504 1.974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4963400 1879000 3084400 1354100 611280 742780 3609300 1267700 2341600 0 0 0 0 0 0 0 0 0 0 0 0 14198 2064 14775 72559;72560 73586 73586 1 IDEELTGK KLFNESHGIFLGLQRIDEELTGKSRKSQLV IFLGLQRIDEELTGKSRKSQLVRVSKNYRS R I D G K S 0 0 0 1 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 903.45493 Q9BW27;J3KT10;J3KSH3;J3KRC0 Q9BW27 85 92 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.0022926 110.81 By MS/MS By MS/MS By MS/MS 1 1 1 1.3369 1.141 31.398 3 Median NaN NaN NaN 0 0 Median 2.1621 1.8486 NaN 1 0 Median 1.0266 1.0255 NaN 1 0 Median 1.3369 1.141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28230000 13404000 14826000 0 0 0 3900900 1560700 2340200 22529000 11142000 11386000 1799900 700840 1099100 0 0 0 0 0 0 14199 3861 14776 72561;72562;72563 73587;73588;73589;73590 73588 4 IDEHHFVAVALR LDGEEEKEWAFEESKIDEHHFVAVALRKPD ESKIDEHHFVAVALRKPDGSRHQDVPSQDD K I D L R K 2 1 0 1 0 0 1 0 2 1 1 0 0 1 0 0 0 0 0 2 0 0 12 0 1405.7466 Q9NRN7;E9PLW6 Q9NRN7 235 246 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 3 0.0010926 45.077 By matching By MS/MS By MS/MS 1 1 2 1.2497 1.13 18.757 4 Median 1.277 1.2382 NaN 1 0 Median 1.223 1.0177 NaN 1 1 Median 1.1811 1.251 27.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18928000 8182800 10745000 3074100 1417900 1656200 6296600 2797900 3498800 9556800 3967100 5589800 0 0 0 0 0 0 0 0 0 14200 4085 14777 72564;72565;72566;72567 73591;73592;73593 73592 3 IDEINKELNQVMEQLGDAR LEGELTEEVEMAKRRIDEINKELNQVMEQL NKELNQVMEQLGDARIDRQESSRQQRKAEI R I D A R I 1 1 2 2 0 2 3 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 19 1 2214.095 Q14683;G8JLG1 Q14683 470 488 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 6.5224E-05 38.824 By matching By MS/MS By matching 1 1 1 1.2562 1.1236 13.965 3 Median 1.3001 1.3319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88725 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2562 1.1236 NaN 1 0 Median 2864200 1289600 1574600 489630 196070 293560 0 0 0 2311300 1064900 1246400 0 0 0 0 0 0 63262 28611 34651 14201 2889 14778 72568;72569;72570 73594;73595 73594 2 IDELEPR VLELQGLQKNMTRFRIDELEPRRPRYRVPD QKNMTRFRIDELEPRRPRYRVPDVLVADPP R I D P R R 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 870.4447 Q14697;F5H6X6 Q14697 103 109 GANAB Neutral alpha-glucosidase AB yes no 2 0.0028859 119.57 By MS/MS By MS/MS 1 2 0.99014 0.85043 16.278 3 Plateau 0.81465 0.78461 NaN 1 0 Median 0.85846 0.72706 22.165 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58861000 28862000 29998000 13763000 7733100 6030300 45097000 21129000 23968000 0 0 0 0 0 0 0 0 0 0 0 0 14202 2896 14779 72571;72572;72573 73596;73597;73598;73599 73598 4 IDELPEGAVKPPANK LVFAKMKGYPHWPARIDELPEGAVKPPANK IDELPEGAVKPPANKYPIFFFGTHETAFLG R I D N K Y 2 0 1 1 0 0 2 1 0 1 1 2 0 0 3 0 0 0 0 1 0 0 15 1 1576.8461 Q9Y3E1 Q9Y3E1 29 43 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes yes 3 0.00038405 41.967 By MS/MS 1 0.58453 0.61102 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58453 0.61102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8323800 5152300 3171500 0 0 0 0 0 0 8323800 5152300 3171500 0 0 0 0 0 0 0 0 0 14203 4426 14780 72574 73600;73601 73600 2 IDEMPEAAVK LVFAKMKGYPHWPARIDEMPEAAVKSTANK HWPARIDEMPEAAVKSTANKYQVFFFGTHE R I D V K S 2 0 0 1 0 0 2 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 10 0 1101.5376 P51858 P51858 30 39 HDGF Hepatoma-derived growth factor yes yes 2 0.00035427 83.623 By matching By MS/MS By MS/MS By MS/MS 2 2 6 7 0.88542 0.82084 10.24 16 Median 0.79536 0.75693 14.773 2 0 Median 0.90328 0.75787 NaN 1 0 Median 0.76821 0.81007 8.0513 6 0 Median 0.98169 0.8231 10.099 7 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 191340000 95562000 95776000 16012000 8308700 7702900 5228100 2688300 2539800 107690000 55828000 51860000 62410000 28737000 33673000 0 0 0 0 0 0 14204 2444 14781;14782 72575;72576;72577;72578;72579;72580;72581;72582;72583;72584;72585;72586;72587;72588;72589;72590;72591 73602;73603;73604;73605;73606;73607;73608;73609;73610;73611;73612;73613;73614;73615;73616;73617;73618;73619;73620;73621 73602 1140 20 IDEPLEGSEDR QRIKQIRHESGASIKIDEPLEGSEDRIITI ASIKIDEPLEGSEDRIITITGTQDQIQNAQ K I D D R I 0 1 0 2 0 0 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 11 0 1258.5677 P61978;S4R359 P61978 423 433 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes no 2 2.4317E-15 190.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 4 3 6 0.98402 0.83901 9.2308 23 Median 0.88679 0.86038 0.0046804 2 0 Median 0.99735 0.84843 1.58 2 0 Median 0.85807 0.83445 5.771 6 0 Median 1.0811 0.91348 4.5248 4 0 Median 0.86333 0.88025 17.951 3 0 Median 1.0152 0.80411 10.194 6 0 Median 1431100000 719960000 711130000 28872000 14172000 14700000 71861000 34914000 36947000 769210000 398940000 370270000 376710000 178270000 198440000 82826000 43302000 39524000 101610000 50362000 51252000 14205 2565 14783 72592;72593;72594;72595;72596;72597;72598;72599;72600;72601;72602;72603;72604;72605;72606;72607;72608;72609;72610;72611;72612;72613;72614 73622;73623;73624;73625;73626;73627;73628;73629;73630;73631;73632;73633;73634;73635;73636;73637;73638;73639;73640;73641;73642;73643;73644;73645;73646;73647;73648;73649;73650;73651;73652;73653;73654;73655;73656;73657;73658;73659;73660;73661;73662;73663;73664;73665;73666;73667;73668;73669;73670;73671 73653 50 IDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK QRIKQIRHESGASIKIDEPLEGSEDRIITI DQIQNAQYLLQNSVKQYSGKFF________ K I D V K Q 1 1 2 3 0 5 3 2 0 5 3 1 0 0 1 2 3 0 1 1 0 0 34 1 3828.9381 P61978 P61978 423 456 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 3 0.0072711 19.636 By MS/MS By MS/MS 1 1 0.74654 0.76134 8.185 2 Median 0.79575 0.80671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70038 0.71853 NaN 1 0 Median NaN NaN NaN 0 0 Median 10269000 5235400 5033800 2059100 889680 1169500 0 0 0 0 0 0 0 0 0 8210100 4345800 3864400 0 0 0 14206 2565 14784 72615;72616 73672;73673;73674 73672 3 IDESIHLQLR MHALLAIALTMYPMRIDESIHLQLREKYGD MYPMRIDESIHLQLREKYGDKMLRMQKGDP R I D L R E 0 1 0 1 0 1 1 0 1 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1222.667 B0QY89;Q9Y262;B0QY90 B0QY89 425 434 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2;3 9.4812E-05 84.213 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0601 0.95613 37.44 7 Median 0.9487 0.92457 11.248 2 0 Median 0.64247 0.54011 47.691 3 1 Median 1.1454 1.1832 NaN 1 0 Median 1.1339 0.95613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55939000 27549000 28389000 27114000 12872000 14242000 23617000 12251000 11366000 4691000 2151400 2539600 516430 274680 241750 0 0 0 0 0 0 14207 554 14785 72617;72618;72619;72620;72621;72622;72623 73675;73676;73677;73678;73679 73675 5 IDESSLTGESDHVK LLPADGILIQGNDLKIDESSLTGESDHVKK KIDESSLTGESDHVKKSLDKDPMLLSGTHV K I D V K K 0 0 0 2 0 0 2 1 1 1 1 1 0 0 0 3 1 0 0 1 0 0 14 0 1515.7053 P20020;P23634 P23634 234 247 ATP2B1;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 4 no no 3 0.0013975 37.555 By MS/MS 2 1.4101 1.23 10.678 2 Median NaN NaN NaN 0 0 Median 1.4101 1.23 10.678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6947500 2925400 4022100 0 0 0 6947500 2925400 4022100 0 0 0 0 0 0 0 0 0 0 0 0 14208 2119;2071 14786 72624;72625 73680 73680 1 IDESSLTGESDHVKK LLPADGILIQGNDLKIDESSLTGESDHVKK IDESSLTGESDHVKKSLDKDPMLLSGTHVM K I D K K S 0 0 0 2 0 0 2 1 1 1 1 2 0 0 0 3 1 0 0 1 0 0 15 1 1643.8002 P20020;P23634 P23634 234 248 ATP2B1;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 4 no no 3 0.0013239 46.964 By MS/MS 2 1.3407 1.2651 27.437 2 Median NaN NaN NaN 0 0 Median 1.3407 1.2651 27.437 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7273000 3150600 4122400 0 0 0 7273000 3150600 4122400 0 0 0 0 0 0 0 0 0 0 0 0 14209 2119;2071 14787 72626;72627 73681;73682 73681 2 IDEVAVPVHVAK DFSGRTVISPDPNLRIDEVAVPVHVAKILT NLRIDEVAVPVHVAKILTFPEKVNKANINF R I D A K I 2 0 0 1 0 0 1 0 1 1 0 1 0 0 1 0 0 0 0 4 0 0 12 0 1275.7187 O14802 O14802 377 388 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 3 0.025179 22.232 By MS/MS 1 1.4693 1.3346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4693 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 693680 309800 383880 0 0 0 0 0 0 0 0 0 693680 309800 383880 0 0 0 0 0 0 14210 1496 14788 72628 73683 73683 1 IDEYDYSKPIQGQQK KESRGAHAREDYKVRIDEYDYSKPIQGQQK IDEYDYSKPIQGQQKKPFEEHWRKHTLSYV R I D Q K K 0 0 0 2 0 3 1 1 0 2 0 2 0 0 1 1 0 0 2 0 0 0 15 1 1810.8737 P31040;D6RFM5;A0A087X1I3 P31040 601 615 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2;3 5.1264E-09 116.77 By MS/MS By MS/MS By MS/MS 3 2 2 0.90056 0.8853 20.794 7 Median 0.95287 0.8853 11.552 3 0 Plateau 1.2821 1.1964 4.7888 2 0 Median 0.73992 0.83263 15.228 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112290000 54181000 58108000 68688000 35257000 33431000 29871000 11291000 18580000 13730000 7632800 6097300 0 0 0 0 0 0 0 0 0 14211 2200 14789 72629;72630;72631;72632;72633;72634;72635 73684;73685;73686;73687;73688;73689;73690;73691;73692 73692 9 IDFGEAAR IQSIIAIIRAMGRLKIDFGEAARADDARQL RAMGRLKIDFGEAARADDARQLFVLAGSAE K I D A R A 2 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 8 0 877.42938 P08754 P08754 93 100 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.020415 46.426 By MS/MS 1 1.1761 1.0043 NaN 1 Median NaN NaN NaN 0 0 Median 1.1761 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1751100 726290 1024800 0 0 0 1751100 726290 1024800 0 0 0 0 0 0 0 0 0 0 0 0 14212 1908 14790 72636 73693;73694 73693 2 IDFLPHYDTLVK LQSVNQLLLTATKERIDFLPHYDTLVKSGM KERIDFLPHYDTLVKSGMYEYYASEGQNPL R I D V K S 0 0 0 2 0 0 0 0 1 1 2 1 0 1 1 0 1 0 1 1 0 0 12 0 1459.7711 A6NHR9 A6NHR9 115 126 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00077584 90.108 By MS/MS 1 0.8132 0.89912 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8132 0.89912 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9686300 5564200 4122100 0 0 0 0 0 0 9686300 5564200 4122100 0 0 0 0 0 0 0 0 0 14213 518 14791 72637 73695 73695 1 IDFSSIAVPGTSSPR NADPRPPVQFPNLPRIDFSSIAVPGTSSPR IDFSSIAVPGTSSPRQRQPPGTQQSHSSPG R I D P R Q 1 1 0 1 0 0 0 1 0 2 0 0 0 1 2 4 1 0 0 1 0 0 15 0 1532.7835 Q5TDH0 Q5TDH0 94 108 DDI2 Protein DDI1 homolog 2 yes yes 2 0.00033853 54.471 By MS/MS 2 1.1017 1.0944 22.815 2 Median 1.1017 1.0944 22.815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8896300 4482700 4413600 8896300 4482700 4413600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14214 3103 14792 72638;72639 73696 73696 1 IDFVAHDDIPYSSAGSDDVYK NAPWTLTPEFLAEHRIDFVAHDDIPYSSAG DDIPYSSAGSDDVYKHIKEAGMFAPTQRTE R I D Y K H 2 0 0 5 0 0 0 1 1 2 0 1 0 1 1 3 0 0 2 2 0 0 21 0 2313.0437 C9J050;C9JEJ2;P49585;H7C1T3;H7BZN1;Q9Y5K3 C9J050 163 183 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B yes no 3 6.5836E-10 61.767 By matching By MS/MS By matching 1 1 1 1.0096 0.93742 3.6263 3 Median 1.0096 0.94673 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85633 0.88523 NaN 1 0 Median 1.0938 0.93742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13482000 6902600 6579700 3182100 1688500 1493600 0 0 0 10115000 5109200 5006100 184830 104890 79938 0 0 0 0 0 0 14215 666 14793 72640;72641;72642 73697;73698 73698 2 IDFVGELNDK LSFPSTLQTGTGTLKIDFVGELNDKMKGFY TGTLKIDFVGELNDKMKGFYRSKYTTPSGE K I D D K M 0 0 1 2 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1148.5714 E9PLK3;P55786;A6NEC2;E9PP11;E9PJY4;E9PPD4 E9PLK3 142 151 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.00070454 108.98 By MS/MS 1 1.0114 0.97588 NaN 1 Median 1.0114 0.97588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17639000 8558300 9080400 17639000 8558300 9080400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14216 960 14794 72643 73699;73700 73700 2 IDFVGELNDKMK LSFPSTLQTGTGTLKIDFVGELNDKMKGFY TLKIDFVGELNDKMKGFYRSKYTTPSGEVR K I D M K G 0 0 1 2 0 0 1 1 0 1 1 2 1 1 0 0 0 0 0 1 0 0 12 1 1407.7068 E9PLK3;P55786;A6NEC2;E9PP11;E9PJY4;E9PPD4 E9PLK3 142 153 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 3 0.011882 26.711 By MS/MS 1 0.96802 1.0195 NaN 1 Median 0.96802 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4340100 1910700 2429300 4340100 1910700 2429300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14217 960 14795 72644 73701;73702 73701 2 IDFYFDENPYFENK RVEVTEFEDIKSGYRIDFYFDENPYFENKV RIDFYFDENPYFENKVLSKEFHLNESGDPS R I D N K V 0 0 2 2 0 0 2 0 0 1 0 1 0 3 1 0 0 0 2 0 0 0 14 0 1839.7992 Q01105;A0A0C4DFV9;A0A087X027;P0DME0 Q01105 137 150 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.0003072 73.781 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 0.92224 0.86845 17.599 7 Median 0.88126 0.83862 NaN 1 0 Median 1.0291 0.8808 10.378 3 0 Median 1.0279 1.052 27.121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91194 0.74962 NaN 1 0 Median 35622000 17419000 18203000 2069400 1048400 1020900 8600900 4133200 4467700 24888000 12202000 12685000 0 0 0 0 0 0 63745 34539 29206 14218 2683 14796 72645;72646;72647;72648;72649;72650;72651 73703;73704;73705;73706;73707;73708 73708 6 IDGAEPLTPEETEEKEK DIPNPALAQREEQKKIDGAEPLTPEETEEK GAEPLTPEETEEKEKLLTQGFTNWTKRDFN K I D E K L 1 0 0 1 0 0 6 1 0 1 1 2 0 0 2 0 2 0 0 0 0 0 17 1 1913.9106 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 823 839 SMARCA1 Probable global transcription activator SNF2L1 no no 3 0.00022917 38.824 By MS/MS By MS/MS By matching 1 1 1 1.2249 1.2487 20.059 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7833 0.89654 NaN 1 0 Median 1.3109 1.2487 NaN 1 1 Median 1.2249 1.287 NaN 1 0 Median NaN NaN NaN 0 0 Median 7041500 3937900 3103700 0 0 0 0 0 0 3776100 2491100 1285000 1684500 816840 867700 1580900 629920 950950 0 0 0 14219 167;643 14797 72652;72653;72654 73709;73710;73711 73709 3 IDGGITGNMR LLEDFLEHEGYKYERIDGGITGNMRQEAID YKYERIDGGITGNMRQEAIDRFNAPGAQQF R I D M R Q 0 1 1 1 0 0 0 3 0 2 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1032.5022 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 1096 1105 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 6.08E-07 157.91 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1 1.0625 0.94944 17.924 9 Median 0.96824 0.94944 NaN 1 0 Median 1.0954 0.94757 NaN 1 0 Median 1.0625 1.1581 21.012 3 0 Median 1.1334 0.99139 7.5909 2 0 Median 0.84495 0.87732 25.523 2 0 Median NaN NaN NaN 0 0 Median 46427000 23125000 23302000 1181400 676460 504950 1266900 588910 677980 25248000 12508000 12740000 4543300 1986200 2557100 14188000 7366200 6821800 0 0 0 14220 246 14798 72655;72656;72657;72658;72659;72660;72661;72662;72663;72664 73712;73713;73714;73715;73716;73717;73718;73719 73713 8 IDGITIQAR KHALLEADVAAHQDRIDGITIQARQFQDAG AAHQDRIDGITIQARQFQDAGHFDAENIKK R I D A R Q 1 1 0 1 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 9 0 985.55564 A0A0D9SF54;Q13813 Q13813 734 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1.088 0.92606 15.644 5 Median NaN NaN NaN 0 0 Median 1.4688 1.1738 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.088 0.92606 7.7802 3 0 Median NaN NaN NaN 0 0 Median 0.9324 0.77598 NaN 1 0 Median 57533000 23774000 33759000 0 0 0 37065000 14365000 22701000 0 0 0 18284000 8313000 9971200 0 0 0 2184000 1096500 1087500 14221 264;2838 14799 72665;72666;72667;72668;72669;72670;72671;72672 73720;73721;73722;73723;73724;73725;73726;73727;73728;73729;73730;73731 73722 12 IDGLAALSMDR NPLNHNVVDASTAHRIDGLAALSMDRTGLI TAHRIDGLAALSMDRTGLIREGLRVPGNIV R I D D R T 2 1 0 2 0 0 0 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1160.586 Q6W2J9;H7BYY2 Q6W2J9 64 74 BCOR BCL-6 corepressor yes no 2 0.00014501 84.213 By MS/MS 1 0.99978 1.1058 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99978 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3928900 1949900 1979000 0 0 0 0 0 0 3928900 1949900 1979000 0 0 0 0 0 0 0 0 0 14222 3191 14800 72673 73732 73732 1 IDGPVISESTPIAETIMASSNESLVVNR RRTPRKRVETSEHFRIDGPVISESTPIAET ETIMASSNESLVVNRVTGNFKHASPILPIT R I D N R V 2 1 2 1 0 0 3 1 0 4 1 0 1 0 2 5 2 0 0 3 0 0 28 0 2928.475 P42167;G5E972 P42167 270 297 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 3 9.7976E-21 68.361 By MS/MS By MS/MS 1 2 0.64191 0.66331 12.716 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64191 0.66331 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7195 0.72387 16.508 2 0 Median NaN NaN NaN 0 0 Median 6440000 3780200 2659800 0 0 0 0 0 0 4645000 2783900 1861100 0 0 0 1794900 996260 798680 0 0 0 14223 2307 14801 72674;72675;72676 73733;73734;73735;73736 73733 4 IDGSLEVPLER MRENRLTPFLDPRYKIDGSLEVPLERAKDQ PRYKIDGSLEVPLERAKDQLEKHTRYWPMI K I D E R A 0 1 0 1 0 0 2 1 0 1 2 0 0 0 1 1 0 0 0 1 0 0 11 0 1226.6507 Q9NVM9;H0YIA9 Q9NVM9 437 447 ASUN Protein asunder homolog yes no 2 0.00014501 84.213 By MS/MS By MS/MS By matching By matching 1 1 2 2 1.075 1.0383 27.799 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60262 0.64243 NaN 1 0 Median 1.2094 1.0379 NaN 1 0 Median 1.1146 1.2182 22.529 2 0 Median 1.0062 0.9055 21.94 2 0 Median 11094000 5618800 5475400 0 0 0 0 0 0 2794500 1558200 1236400 864860 392530 472330 6635200 3316400 3318800 799630 351730 447900 14224 4136 14802 72677;72678;72679;72680;72681;72682 73737;73738 73737 2 IDGVSLLVQR LPDKHSLAFVVRIERIDGVSLLVQRTIARL VRIERIDGVSLLVQRTIARLRLKKIFSGVF R I D Q R T 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1098.6397 Q6DKI1;R4GMU7 Q6DKI1 105 114 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.00070231 109.71 By MS/MS By matching By matching By MS/MS By matching 1 1 1 3 1 0.94105 0.85232 16.366 7 Median 1.1576 1.1024 NaN 1 0 Median 0.94105 0.80032 NaN 1 0 Median 0.88944 0.85232 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0685 1.0844 17.591 3 0 Plateau 0.91171 0.74549 NaN 1 0 Median 91805000 43681000 48124000 4160800 1623200 2537700 1320600 639540 681110 5010700 2668900 2341700 0 0 0 77481000 36742000 40738000 3832400 2007100 1825300 14225 3132 14803 72683;72684;72685;72686;72687;72688;72689 73739;73740;73741;73742;73743;73744;73745 73745 7 IDHILDAL NEKLISGKRQELVTKIDHILDAL_______ RQELVTKIDHILDAL_______________ K I D A L - 1 0 0 2 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 908.49673 P04843;B7Z4L4 P04843 600 607 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.058877 48.761 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3827000 0 0 3827000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14226 1853 14804 72690 73746 73746 1 IDHLSFGELVPAIINPLDGTEK LAALVNHESYNFSHRIDHLSFGELVPAIIN ELVPAIINPLDGTEKIAIDHNQMFQYFITV R I D E K I 1 0 1 2 0 0 2 2 1 3 3 1 0 1 2 1 1 0 0 1 0 0 22 0 2377.2529 A0A087WU02;Q96RQ1;H0YI58;H0YI50;H0YHJ8 A0A087WU02 226 247 ERGIC2 Endoplasmic reticulum-Golgi intermediate compartment protein 2 yes no 3 0.05953 7.3604 By matching By MS/MS 1 2 0.73882 0.71148 9.0929 3 Plateau NaN NaN NaN 0 0 Median 0.85837 0.74009 NaN 1 0 Median 0.59901 0.64032 5.0562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1845300 1100300 744970 0 0 0 850600 481940 368660 994700 618380 376320 0 0 0 0 0 0 0 0 0 14227 21 14805 72691;72692;72693 73747 73747 1 IDHTGFSPHAAIYSTRPDVK NIIGEVVDQGSTNLKIDHTGFSPHAAIYST FSPHAAIYSTRPDVKCVIHIHTLATAAVSS K I D V K C 2 1 0 2 0 0 0 1 2 2 0 1 0 1 2 2 2 0 1 1 0 0 20 1 2211.1073 Q9UEY8 Q9UEY8 208 227 ADD3 Gamma-adducin yes yes 5 0.066039 8.0164 By MS/MS 2 0.65581 0.72082 1.3662 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65581 0.72082 1.3662 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8822500 5330000 3492500 0 0 0 0 0 0 8822500 5330000 3492500 0 0 0 0 0 0 0 0 0 14228 4257 14806 72694;72695 73748;73749 73748 2 IDHYVLEYR NCVTLVWRMPDEDSKIDHYVLEYRRTNFEG PDEDSKIDHYVLEYRRTNFEGPPRLKEDQP K I D Y R R 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 2 1 0 0 9 0 1206.6033 M0R366;Q9BTV5 M0R366 195 203 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 3 0.00063574 72.643 By MS/MS 1 0.73788 0.77196 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73788 0.77196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3114300 1710800 1403500 0 0 0 0 0 0 3114300 1710800 1403500 0 0 0 0 0 0 0 0 0 14229 1438 14807 72696 73750;73751 73750 2 IDIDPEETVK ______________________________ QQTFKIDIDPEETVKALKEKIESEKGKDAF K I D V K A 0 0 0 2 0 0 2 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 10 0 1157.5816 P54727;Q5W0S5 P54727 15 24 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.011415 61.65 By MS/MS By MS/MS By MS/MS 1 2 2 0.73924 0.71585 87.631 3 Median 0.20169 0.18499 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.73924 0.71585 NaN 1 1 Median 1.1128 0.9548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87263000 68602000 18661000 61592000 54853000 6739300 0 0 0 21851000 11558000 10293000 3820000 2191000 1629000 0 0 0 0 0 0 14230 2486 14808 72697;72698;72699;72700;72701 73752;73753;73754;73755;73756 73754 5 IDIDYQK MKSKMREKVRPKMGKIDIDYQKLHDAFFKW KVRPKMGKIDIDYQKLHDAFFKWQTKPKLT K I D Q K L 0 0 0 2 0 1 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 7 0 893.44945 Q13435;E9PPJ0 Q13435 564 570 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.015644 70.912 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 1.0481 0.9455 12.48 8 Median 0.88917 0.88423 NaN 1 0 Median 1.4323 1.2089 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1176 0.96514 NaN 1 0 Median 1.0154 1.0322 10.494 3 0 Median 1.0689 0.88257 6.8316 2 0 Median 64961000 27941000 37020000 2230500 1113800 1116700 17270000 4989000 12281000 0 0 0 4760400 2018700 2741700 34996000 17328000 17669000 5704200 2491600 3212600 14231 2817 14809 72702;72703;72704;72705;72706;72707;72708;72709 73757;73758;73759;73760;73761;73762;73763;73764 73757 8 IDIGAVYSHRPNQHNTVK QSDLEKEMQKMNPYKIDIGAVYSHRPNQHN GAVYSHRPNQHNTVKLGAFQAQEKELVFDI K I D V K L 1 1 2 1 0 1 0 1 2 2 0 1 0 0 1 1 1 0 1 2 0 0 18 1 2048.0552 P49642;F8VSB2;F8VNY2 P49642 78 95 PRIM1 DNA primase small subunit;DNA primase yes no 4 1.6243E-06 61.815 By MS/MS By MS/MS By MS/MS 1 1 1 0.93502 0.93273 12.688 3 Median 0.93502 0.93273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78946 0.80064 NaN 1 0 Median 1.0799 1.03 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43855000 21530000 22325000 8063000 3741300 4321600 0 0 0 11031000 6126900 4904500 24760000 11661000 13099000 0 0 0 0 0 0 14232 2388 14810 72710;72711;72712 73765;73766;73767;73768;73769 73769 5 IDIIPNPQER SLTDPSKLDSGKELKIDIIPNPQERTLTLV GKELKIDIIPNPQERTLTLVDTGIGMTKAD K I D E R T 0 1 1 1 0 1 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 10 0 1193.6404 P08238;Q58FF7 P08238 73 82 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.00034968 112.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 2 3 1 1 0.87283 0.77851 59.594 14 Median 0.85545 0.83035 6.3112 2 0 Median 0.88098 0.76315 90.426 6 1 Median 0.74768 0.77264 11.803 2 1 Median 0.99401 0.83723 18.086 3 0 Median NaN NaN NaN 0 0 Median 0.82534 0.66888 NaN 1 0 Median 504880000 260390000 244500000 312270000 166800000 145470000 123350000 63645000 59706000 52958000 21246000 31713000 12490000 6338100 6152300 0 0 0 3810400 2350800 1459600 14233 1899 14811 72713;72714;72715;72716;72717;72718;72719;72720;72721;72722;72723;72724;72725;72726;72727 73770;73771;73772;73773;73774;73775;73776;73777;73778;73779;73780;73781;73782;73783;73784;73785;73786;73787;73788;73789;73790;73791;73792;73793;73794;73795 73774 26 IDILDSALLRPGR FEATKNIKVIMATNRIDILDSALLRPGRID NRIDILDSALLRPGRIDRKIEFPPPNEEAR R I D G R I 1 2 0 2 0 0 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 13 1 1437.8304 P62195 P62195 298 310 PSMC5 26S protease regulatory subunit 8 yes yes 3 0.0021153 38.021 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1.0622 0.97055 35.081 7 Median 1.029 1.0606 1.6 2 0 Median 1.0459 0.95982 1.5721 2 0 Median 2.2857 2.4748 NaN 1 0 Median 1.003 0.93558 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.092 0.96046 NaN 1 0 Median 39546000 17919000 21627000 6785600 3066500 3719200 26829000 12330000 14499000 5110700 2114900 2995800 386670 186840 199830 0 0 0 434330 220640 213690 14234 2572 14812 72728;72729;72730;72731;72732;72733;72734 73796;73797 73796 2 IDILVNNGGMSQR SHEAATKAVLQEFGRIDILVNNGGMSQRSL GRIDILVNNGGMSQRSLCMDTSLDVYRKLI R I D Q R S 0 1 2 1 0 1 0 2 0 2 1 0 1 0 0 1 0 0 0 1 0 0 13 0 1415.7191 Q9Y394;H0YJ66 Q9Y394 132 144 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 2 5.1194E-10 173.71 By MS/MS By MS/MS 1 1 1.1809 1.0431 11.351 2 Median 1.029 0.96268 NaN 1 0 Median 1.3553 1.1303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26763000 13121000 13642000 22090000 11279000 10811000 4673600 1841900 2831700 0 0 0 0 0 0 0 0 0 0 0 0 14235 4408 14813 72735;72736 73798;73799;73800 73798 3 IDINMSGFNETDDLK LNQIAPKGQKEGEPRIDINMSGFNETDDLK IDINMSGFNETDDLKRAESMLQQADKLGCR R I D L K R 0 0 2 3 0 0 1 1 0 2 1 1 1 1 0 1 1 0 0 0 0 0 15 0 1710.7771 P13797;A0A0A0MSQ0;H7C4N2 P13797 321 335 PLS3 Plastin-3 yes no 2 4.6777E-06 87.001 By MS/MS By matching 1 1 1.1958 1.0852 16.417 2 Median 1.281 1.2187 NaN 1 0 Median 1.1162 0.96624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8137700 3484200 4653400 6959600 2849200 4110400 1178100 635000 543090 0 0 0 0 0 0 0 0 0 0 0 0 14236 1995 14814 72737;72738 73801 73801 1 IDINMSGFNETDDLKR LNQIAPKGQKEGEPRIDINMSGFNETDDLK DINMSGFNETDDLKRAESMLQQADKLGCRQ R I D K R A 0 1 2 3 0 0 1 1 0 2 1 1 1 1 0 1 1 0 0 0 0 0 16 1 1866.8782 P13797;A0A0A0MSQ0;H7C4N2 P13797 321 336 PLS3 Plastin-3 yes no 2;3 5.8664E-14 171.05 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 3 4 2 2 1 1.1429 1.0968 35.708 18 Median 1.05 1.048 20.325 6 0 Median 1.1225 1.011 4.326 3 0 Median 1.3111 1.3933 8.4989 4 1 Median 1.6871 1.5469 26.356 2 0 Median 2.4425 2.6125 13.896 2 0 Median 1.0499 0.93328 NaN 1 0 Median 692830000 310630000 382200000 484470000 221630000 262830000 163110000 71376000 91735000 34306000 13941000 20365000 3443300 1424400 2018900 7364600 2176600 5188000 139020 78905 60111 14237 1995 14815;14816 72739;72740;72741;72742;72743;72744;72745;72746;72747;72748;72749;72750;72751;72752;72753;72754;72755;72756 73802;73803;73804;73805;73806;73807;73808;73809;73810;73811;73812;73813;73814;73815;73816;73817;73818;73819 73810 787 18 IDISPVLLQK AGFVNHFGRSMSVEKIDISPVLLQKGSTKI MSVEKIDISPVLLQKGSTKIALYGLGSIPD K I D Q K G 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1124.6805 P49959;F8W7U8;F5GXT0 P49959 162 171 MRE11A Double-strand break repair protein MRE11A yes no 2 0.0006853 72.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 5 1 0.98193 0.96619 15.307 14 Median 0.92199 0.88163 18.228 3 1 Plateau NaN NaN NaN 0 0 Median 0.90969 1.0017 10.338 3 0 Median 1.0566 0.92813 6.3023 2 0 Median 1.0362 1.0698 13.751 5 0 Median 1.0568 0.89655 NaN 1 0 Median 80690000 41326000 39364000 8006600 4134500 3872100 0 0 0 60391000 31215000 29176000 3436400 1553300 1883100 8695900 4354700 4341200 160440 68218 92217 14238 2407 14817 72757;72758;72759;72760;72761;72762;72763;72764;72765;72766;72767;72768;72769;72770 73820;73821;73822;73823;73824;73825;73826;73827;73828 73824 9 IDIVENR FMYLNEVAGKHGVGRIDIVENRFIGMKSRG AGKHGVGRIDIVENRFIGMKSRGIYETPAG R I D N R F 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 857.46068 P00966 P00966 266 272 ASS1 Argininosuccinate synthase yes yes 2 0.0061063 94.407 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 4 2 1.0034 1.0339 24.073 10 Median 1.1197 1.0964 NaN 1 0 Median 1.2418 1.0718 NaN 1 0 Median 0.67189 0.71559 51.922 2 1 Median NaN NaN NaN 0 0 Median 0.94003 0.96865 4.4843 4 0 Median 1.4114 1.1021 6.522 2 0 Median 74584000 35489000 39095000 5339500 2664800 2674800 2964900 1296000 1668900 2483100 1208300 1274800 0 0 0 32426000 16886000 15540000 31371000 13434000 17937000 14239 1828 14818 72771;72772;72773;72774;72775;72776;72777;72778;72779;72780 73829;73830;73831;73832;73833 73830 5 IDKELINR GIDYDKLIVRFGSSKIDKELINRIERATGQ VRFGSSKIDKELINRIERATGQRPHHFLRR K I D N R I 0 1 1 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 1 999.57129 P23381;G3V3Y5;G3V3H8;G3V277;G3V3P2;G3V456;G3V5U1;G3V227;G3V423;G3V3X0;G3V2Y7 P23381 112 119 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 0.036308 66.073 By matching By MS/MS 1 1 1.0532 1.0121 7.2952 2 Median 1.0549 1.0656 NaN 1 0 Median 1.0514 0.96117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3293300 1485200 1808000 1915200 836690 1078500 1378100 648550 729560 0 0 0 0 0 0 0 0 0 0 0 0 14240 2111 14819 72781;72782 73834 73834 1 IDKLEQDMER LESFLAWKKRKRQEKIDKLEQDMERRKADF KRQEKIDKLEQDMERRKADFKAGKALVISG K I D E R R 0 1 0 2 0 1 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 10 1 1275.6129 Q8WU90 Q8WU90 267 276 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 3 0.00013193 76.143 By MS/MS 1 0.85735 0.80452 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85735 0.80452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2705900 1793200 912710 0 0 0 0 0 0 0 0 0 2705900 1793200 912710 0 0 0 0 0 0 14241 3485 14820 72783 73835;73836 73835 2 IDKLMIEMDGTENK PALVSKKLNVTEQEKIDKLMIEMDGTENKS KIDKLMIEMDGTENKSKFGANAILGVSLAV K I D N K S 0 0 1 2 0 0 2 1 0 2 1 2 2 0 0 0 1 0 0 0 0 0 14 1 1635.7848 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 90 103 ENO1 Alpha-enolase;Enolase yes no 2;3 5.1079E-09 169.52 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 5 1.1669 1.1449 15.993 17 Median 1.2096 1.1449 15.712 3 0 Median 1.2515 1.1741 20.473 5 0 Median 1.1331 1.1847 8.5604 4 1 Median 1.0876 1.033 15.657 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 235890000 106950000 128940000 77821000 35180000 42641000 33243000 13868000 19376000 66575000 30554000 36020000 58249000 27351000 30898000 0 0 0 0 0 0 14242 1873 14821;14822;14823 72784;72785;72786;72787;72788;72789;72790;72791;72792;72793;72794;72795;72796;72797;72798;72799;72800;72801 73837;73838;73839;73840;73841;73842;73843;73844;73845;73846;73847;73848;73849;73850;73851;73852;73853;73854;73855;73856;73857 73847 635;636 21 IDKTDYMVGSYGPR SGMKYIQHTYRKGVKIDKTDYMVGSYGPRA KIDKTDYMVGSYGPRAEEYEFLTPVEEAPK K I D P R A 0 1 0 2 0 0 0 2 0 1 0 1 1 0 1 1 1 0 2 1 0 0 14 1 1600.7555 J3KTF8;J3QQX2;P52565 J3KTF8 139 152 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2;3 2.1078E-07 165.35 By MS/MS By MS/MS By MS/MS By MS/MS 6 6 5 3 0.95195 0.98356 16.296 20 Median 0.89404 0.92665 9.2047 6 0 Median 1.0984 1.0095 11.036 6 2 Median 0.94792 0.99985 8.9901 5 1 Median 1.3302 1.1775 28.03 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 833930000 415650000 418280000 651590000 330270000 321320000 106230000 49532000 56700000 68680000 32495000 36185000 7429800 3356000 4073900 0 0 0 0 0 0 14243 1336 14824;14825 72802;72803;72804;72805;72806;72807;72808;72809;72810;72811;72812;72813;72814;72815;72816;72817;72818;72819;72820;72821 73858;73859;73860;73861;73862;73863;73864;73865;73866;73867;73868;73869;73870;73871;73872;73873;73874;73875;73876;73877;73878;73879;73880;73881;73882;73883;73884 73871 442 27 IDKVNEIVETNRPDSK QELSRFIAAGRLHCKIDKVNEIVETNRPDS DKVNEIVETNRPDSKNWQYQETIKKGDLLL K I D S K N 0 1 2 2 0 0 2 0 0 2 0 2 0 0 1 1 1 0 0 2 0 0 16 2 1855.964 Q15008 Q15008 347 362 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 3;4 4.3777E-05 64.136 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.91917 1.0014 36.3 8 Median 0.81652 0.8645 46.096 3 0 Median 1.0194 1.2185 6.4732 2 0 Median 0.98636 1.1058 2.0731 2 0 Median 0.86729 0.86756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38869000 20492000 18376000 20080000 10798000 9281300 8304100 3874700 4429400 9159800 5007300 4152500 1325000 811720 513260 0 0 0 0 0 0 14244 2911 14826 72822;72823;72824;72825;72826;72827;72828;72829 73885;73886;73887;73888;73889;73890;73891;73892 73886 8 IDKYTEVLK LMRLRKQAEKNVEKKIDKYTEVLKTHGLLV KNVEKKIDKYTEVLKTHGLLV_________ K I D L K T 0 0 0 1 0 0 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 9 1 1107.6176 P40429;M0QYS1;Q8J015 P40429 189 197 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2 0.0082463 78.149 By MS/MS By matching 2 1 1.135 1.0607 18.918 3 Median 1.1852 1.242 22.316 2 0 Median 1.135 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24406000 11252000 13154000 17152000 8102200 9050000 7253800 3149300 4104400 0 0 0 0 0 0 0 0 0 0 0 0 14245 2288 14827 72830;72831;72832 73893 73893 1 IDLAGSSLSGILDK RPVGPLTHTRGDSPKIDLAGSSLSGILDKD KIDLAGSSLSGILDKDLSDRSNDIDLEGFD K I D D K D 1 0 0 2 0 0 0 2 0 2 3 1 0 0 0 3 0 0 0 0 0 0 14 0 1387.7559 Q5JPT2;Q96B97 Q5JPT2 419 432 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 2 4.252E-06 95.018 By MS/MS By matching By matching 2 1 1 1.1004 1.0642 12.246 4 Median NaN NaN NaN 0 0 Median 1.088 0.96025 12.26 2 0 Median 1.0137 1.0814 NaN 1 0 Median 1.3564 1.1789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331000 2692000 3639000 0 0 0 4291900 1753900 2538100 1402400 653020 749340 636680 285120 351560 0 0 0 0 0 0 14246 3048 14828 72833;72834;72835;72836 73894 73894 1 IDLAVLLGK VPLPAENVTITAGQRIDLAVLLGKTPSTME ITAGQRIDLAVLLGKTPSTMENDSSNLDPS R I D G K T 1 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 940.59572 F8W726;Q14157;Q5VU77 F8W726 293 301 UBAP2L Ubiquitin-associated protein 2-like yes no 2 0.0702 26.602 By MS/MS By matching By matching By matching By matching By matching 5 7 4 4 1 2 1.3208 1.1756 13.639 23 Median 1.2906 1.2731 10.089 5 0 Median 1.3148 1.1469 14.085 7 0 Median 1.2838 1.3608 12.495 4 0 Median 1.8472 1.5851 16.078 4 0 Linear 1.0179 1.063 NaN 1 0 Median 1.4729 1.2268 17.188 2 0 Median 41630000 17751000 23879000 4763300 2002600 2760700 27327000 12089000 15238000 2035300 931410 1103900 6046100 2115400 3930700 192780 80760 112020 1265900 532540 733340 14247 1083 14829 72837;72838;72839;72840;72841;72842;72843;72844;72845;72846;72847;72848;72849;72850;72851;72852;72853;72854;72855;72856;72857;72858;72859 73895 73895 1 IDLGERPVVQR KINQQEEPGFEVITRIDLGERPVVQRREPV VITRIDLGERPVVQRREPVSLEEWTKNIDS R I D Q R R 0 2 0 1 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 11 1 1280.7201 Q8TC07;C9JA93 Q8TC07 303 313 TBC1D15 TBC1 domain family member 15 yes no 2;3 9.714E-05 72.434 By MS/MS By MS/MS 4 2 0.74355 0.71815 16.446 6 Median 0.72062 0.72427 20.994 4 1 Median 0.7679 0.69741 4.8331 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24056000 13466000 10590000 14081000 8037500 6043300 9974700 5428200 4546500 0 0 0 0 0 0 0 0 0 0 0 0 14248 3463 14830 72860;72861;72862;72863;72864;72865 73896;73897;73898;73899;73900 73896 5 IDLNYLR VVARCSEGPGLCLARIDLNYLRQLRRHLPV GPGLCLARIDLNYLRQLRRHLPVFQHRRPD R I D L R Q 0 1 1 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 7 0 905.49707 Q86X76 Q86X76 296 302 NIT1 Nitrilase homolog 1 yes yes 2 0.012521 88.734 By MS/MS 1 0.6442 0.6029 NaN 1 Median 0.6442 0.6029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18336000 12074000 6261800 18336000 12074000 6261800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14249 3300 14831 72866 73901 73901 1 IDLPAENSNSETIIITGK GGANIKKIREESNTKIDLPAENSNSETIII PAENSNSETIIITGKRANCEAARSRILSIQ K I D G K R 1 0 2 1 0 0 2 1 0 4 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1913.9946 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 615 632 HDLBP Vigilin yes no 2 1.9689E-08 96.734 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.167 1.0107 15.2 4 Median 1.0121 0.97968 NaN 1 0 Median 1.2119 1.0427 NaN 1 0 Median 1.2522 1.3462 NaN 1 0 Median 1.1237 0.97684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12949000 5958900 6989800 10215000 4644300 5571000 766560 352700 413850 1795000 879710 915300 171760 82176 89588 0 0 0 0 0 0 14250 4 14832 72867;72868;72869;72870 73902;73903;73904 73903 3 IDLPAENSNSETIIITGKR GGANIKKIREESNTKIDLPAENSNSETIII AENSNSETIIITGKRANCEAARSRILSIQK K I D K R A 1 1 2 1 0 0 2 1 0 4 1 1 0 0 1 2 2 0 0 0 0 0 19 1 2070.0957 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 615 633 HDLBP Vigilin yes no 3 1.9431E-08 78.012 By MS/MS 1 0.86482 0.87156 NaN 1 Median 0.86482 0.87156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6619000 3592600 3026400 6619000 3592600 3026400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14251 4 14833 72871 73905;73906 73905 2 IDLPEVQIEHDPELEKESPGLK QNIGDHMLTCSLSPKIDLPEVQIEHDPELE IEHDPELEKESPGLKNSPIDESEVQTATDS K I D L K N 0 0 0 2 0 1 5 1 1 2 3 2 0 0 3 1 0 0 0 1 0 0 22 1 2514.2853 Q14966 Q14966 1083 1104 ZNF638 Zinc finger protein 638 yes yes 4 0.0082293 21.616 By MS/MS 1 0.41184 0.47599 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41184 0.47599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7232300 5642700 1589600 0 0 0 0 0 0 7232300 5642700 1589600 0 0 0 0 0 0 0 0 0 14252 2903 14834 72872 73907 73907 1 IDLPEYQGEPDEISIQK QILGDKFPCTLVAQKIDLPEYQGEPDEISI LPEYQGEPDEISIQKCQEAVRQVQGPVLVE K I D Q K C 0 0 0 2 0 2 3 1 0 3 1 1 0 0 2 1 0 0 1 0 0 0 17 0 1972.963 Q9BY32 Q9BY32 40 56 ITPA Inosine triphosphate pyrophosphatase yes yes 2 3.1401E-05 65.563 By MS/MS 1 1.8771 1.7445 NaN 1 Median 1.8771 1.7445 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18494000 5524000 12970000 18494000 5524000 12970000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14253 3884 14835 72873 73908 73908 1 IDLQVPSSESK DLSEDLFKVHDFDVKIDLQVPSSESKALAI FDVKIDLQVPSSESKALAITSKAPPAKDGA K I D S K A 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 3 0 0 0 1 0 0 11 0 1201.619 Q92541 Q92541 668 678 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 2 0.039224 28.204 By MS/MS By matching 1 1 1.0241 1.0593 25.456 2 Median 0.90343 0.88476 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.161 1.2682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7258500 3515600 3742900 4362000 1969400 2392600 0 0 0 2896500 1546200 1350200 0 0 0 0 0 0 0 0 0 14254 3534 14836 72874;72875 73909 73909 1 IDLRPVLGEGVPILASFLR TTVKALTLIAGSPLKIDLRPVLGEGVPILA PVLGEGVPILASFLRKNQRALKLGTLSALD K I D L R K 1 2 0 1 0 0 1 2 0 2 4 0 0 1 2 1 0 0 0 2 0 0 19 1 2064.2095 Q86VP6;A0A0C4DGH5 Q86VP6 642 660 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 3 0.0099206 22.653 By MS/MS By MS/MS By MS/MS 1 2 1 0.75377 0.8762 33.362 4 Median 0.76815 0.85343 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72759 0.86253 5.9483 2 0 Median NaN NaN NaN 0 0 Median 1.536 1.6689 NaN 1 0 Median NaN NaN NaN 0 0 Median 6467100 3433000 3034100 4007900 2169200 1838700 0 0 0 1937700 1065200 872480 0 0 0 521580 198650 322930 0 0 0 14255 3288 14837 72876;72877;72878;72879 73910;73911;73912;73913;73914 73910 5 IDLTLLNR CNVMLESRFEKMYEKIDLTLLNRLLRLIVD FEKMYEKIDLTLLNRLLRLIVDHNIADYMT K I D N R L 0 1 1 1 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 956.56548 Q6P2Q9;I3L0J9 Q6P2Q9 988 995 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0017402 143 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 2 2 1.1513 1.073 9.7723 11 Median 1.0738 1.0499 4.9358 2 0 Median 1.2443 1.0524 NaN 1 0 Median 0.95318 1.0492 3.1691 2 0 Median 1.3511 1.1804 2.6324 2 0 Median 1.0167 1.057 4.485 2 0 Median 1.409 1.2087 21.848 2 0 Median 73882000 35762000 38120000 9446100 4290000 5156100 4304300 1922300 2382000 31220000 15847000 15373000 2868500 1251100 1617400 23687000 11430000 12257000 2355400 1021800 1333600 14256 3157 14838 72880;72881;72882;72883;72884;72885;72886;72887;72888;72889;72890 73915;73916;73917;73918;73919;73920;73921;73922;73923 73918 9 IDMNLTDLLGELQR QQPPPSNRFLQPVQKIDMNLTDLLGELQRD KIDMNLTDLLGELQRDPWPVPQGKRPLRSS K I D Q R D 0 1 1 2 0 1 1 1 0 1 4 0 1 0 0 0 1 0 0 0 0 0 14 0 1629.8396 F5H365;Q15436;A0A2R8YFH5;Q15437;Q5QPE2 F5H365 207 220 SEC23A;SEC23B Protein transport protein Sec23A;Protein transport protein Sec23B no no 2 5.7686E-06 93.821 By MS/MS By MS/MS By matching 2 3 1 1.0544 1.022 6.7345 6 Median 1.0045 0.99649 4.2764 2 0 Median 1.2163 1.0511 9.4491 3 0 Median 0.9624 1.017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15196000 6904600 8291000 2863900 1387000 1476900 11788000 5213100 6574500 544010 304440 239560 0 0 0 0 0 0 0 0 0 14257 1029;401 14839;14840 72891;72892;72893;72894;72895;72896 73924;73925;73926;73927 73924 185 4 IDNDGDGFVTTEELK TPDESKERLGKIVDRIDNDGDGFVTTEELK IDNDGDGFVTTEELKTWIKRVQKRYIFDNV R I D L K T 0 0 1 3 0 0 2 2 0 1 1 1 0 1 0 0 2 0 0 1 0 0 15 0 1651.7577 Q15293 Q15293 91 105 RCN1 Reticulocalbin-1 yes yes 2 1.6904E-10 117.23 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.96711 0.9354 37.234 5 Median 1.016 0.9354 NaN 1 0 Median 1.2265 1.0503 NaN 1 0 Median 0.93806 0.93245 9.7592 2 0 Median 0.51895 0.42451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56735000 27604000 29131000 32540000 15848000 16693000 4798200 2119500 2678700 19083000 9430800 9651900 313650 206160 107490 0 0 0 0 0 0 14258 2940 14841 72897;72898;72899;72900;72901 73928;73929;73930;73931 73928 4 IDNIFTEPYSR YLCLGIQQYLFENGRIDNIFTEPYSRFMIE ENGRIDNIFTEPYSRFMIELTKLLKIWEPT R I D S R F 0 1 1 1 0 0 1 0 0 2 0 0 0 1 1 1 1 0 1 0 0 0 11 0 1353.6565 Q5VZL5;H7C1I7 Q5VZL5 1324 1334 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.00011268 125.56 By MS/MS 2 0.9003 0.99113 17.209 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9003 0.99113 17.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8943200 4902500 4040700 0 0 0 0 0 0 8943200 4902500 4040700 0 0 0 0 0 0 0 0 0 14259 3117 14842 72902;72903 73932;73933 73933 2 IDNLDVNR SRLQRIHAEIKNSLKIDNLDVNRCIEALDE EIKNSLKIDNLDVNRCIEALDELASLQVTM K I D N R C 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.48796 O75475 O75475 365 372 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.002327 138.9 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 1 1 0.99101 0.84536 21.7 9 Median 1.1133 1.1208 6.0754 2 0 Median 1.0035 0.84536 NaN 1 0 Median 0.81409 0.82326 NaN 1 0 Median 1.3037 1.1078 29.408 3 0 Plateau 0.96099 1.0172 NaN 1 0 Median 0.87267 0.71063 NaN 1 1 Median 49793000 25103000 24690000 9840600 4372200 5468400 5675700 2554300 3121500 23021000 12666000 10355000 6628600 2978200 3650500 2918000 1628900 1289100 1708900 903250 805630 14260 1674 14843 72904;72905;72906;72907;72908;72909;72910;72911;72912;72913 73934;73935;73936;73937;73938;73939;73940;73941;73942;73943;73944 73935 11 IDNSQVESGSLEDDWDFLPPKK LYTLIVRPDNTYEVKIDNSQVESGSLEDDW SGSLEDDWDFLPPKKIKDPDASKPEDWDER K I D K K I 0 0 1 4 0 1 2 1 0 1 2 2 0 1 2 3 0 1 0 1 0 0 22 1 2518.1864 P27797;K7EJB9 P27797 186 207 CALR Calreticulin yes no 3 2.2315E-09 53.201 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 0.93048 0.97568 18.623 6 Median 0.75664 0.72086 NaN 1 0 Median 0.85425 0.80197 NaN 1 0 Median 0.92968 0.97568 12.193 2 0 Median 1.1383 1.1378 NaN 1 0 Median 1.0263 1.0962 NaN 1 0 Median NaN NaN NaN 0 0 Median 31240000 15682000 15558000 17636000 9365200 8271100 4687500 2257000 2430500 7803400 3564000 4239400 218440 102990 115450 894020 392780 501230 0 0 0 14261 2157 14844 72914;72915;72916;72917;72918;72919 73945;73946;73947;73948;73949;73950;73951;73952;73953 73947 9 IDPALLTVTSGK FFALRDNPDLCQCCRIDPALLTVTSGKSID CCRIDPALLTVTSGKSIDDNSTKSEKQTPR R I D G K S 1 0 0 1 0 0 0 1 0 1 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1213.6918 Q68D85 Q68D85 385 396 NCR3LG1 Natural cytotoxicity triggering receptor 3 ligand 1 yes yes 2 0.001592 51.092 By MS/MS 1 0.55609 0.57215 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55609 0.57215 NaN 1 0 Median NaN NaN NaN 0 0 Median 3590700 2148000 1442700 0 0 0 0 0 0 0 0 0 0 0 0 3590700 2148000 1442700 0 0 0 14262 3124 14845 72920 73954 73954 1 IDPAYFDENWLNR EDLTNGVVMAQVLQKIDPAYFDENWLNRIK QKIDPAYFDENWLNRIKTEVGDNWRLKISN K I D N R I 1 1 2 2 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 13 0 1651.7631 Q86VS8 Q86VS8 48 60 HOOK3 Protein Hook homolog 3 yes yes 2 0.058866 24.382 By MS/MS 1 0.70508 0.69821 NaN 1 Median 0.70508 0.69821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1773000 934500 838540 1773000 934500 838540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14263 3289 14846 72921 73955 73955 1 IDPHAPNEMLYGR KQAEDCITRLIHLNKIDPHAPNEMLYGRIG NKIDPHAPNEMLYGRIGYIYALLFVNKNFG K I D G R I 1 1 1 1 0 0 1 1 1 1 1 0 1 0 2 0 0 0 1 0 0 0 13 0 1511.7191 O43813;E9PHS0 O43813 143 155 LANCL1 LanC-like protein 1 yes no 3 0.00010214 75.088 By MS/MS By MS/MS 1 2 0.64546 0.63674 26.464 3 Median 0.6376 0.63674 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77116 0.79686 32.638 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30104000 16815000 13289000 17401000 9740700 7660700 0 0 0 12703000 7074400 5628200 0 0 0 0 0 0 0 0 0 14264 936 14847 72922;72923;72924 73956;73957;73958;73959 73956 4 IDPLALVQAIER PDCANVKQWKGGPVKIDPLALVQAIERYLV PVKIDPLALVQAIERYLVVRGYGRVREDDE K I D E R Y 2 1 0 1 0 1 1 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1336.7715 Q14669 Q14669 1289 1300 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.020655 32.523 By MS/MS By matching By MS/MS 1 2 3 1.1025 1.0517 15.213 6 Median 1.0988 1.1016 NaN 1 0 Median 1.2914 1.129 25.188 2 0 Median 0.9052 1.004 13.548 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5816900 2892600 2924300 1055800 497580 558270 964260 475620 488650 3796800 1919400 1877400 0 0 0 0 0 0 0 0 0 14265 2886 14848 72925;72926;72927;72928;72929;72930 73960;73961;73962 73961 3 IDPQPTSLEHYK YNFSNPPITVLEDIRIDPQPTSLEHYKSDA DIRIDPQPTSLEHYKSDASFSKRSSRTRFT R I D Y K S 0 0 0 1 0 1 1 0 1 1 1 1 0 0 2 1 1 0 1 0 0 0 12 0 1426.7092 E7EVZ1;Q86UP3 E7EVZ1 2182 2193 ZFHX4 Zinc finger homeobox protein 4 yes no 3 0.029814 20.857 By MS/MS 1 0.69465 0.76105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69465 0.76105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1931600 1134000 797630 0 0 0 0 0 0 1931600 1134000 797630 0 0 0 0 0 0 0 0 0 14266 898 14849 72931 73963 73963 1 IDPSKPESILK LPEHKRPSAPVDFSKIDPSKPESILKMTKK DFSKIDPSKPESILKMTKKGKTLMMFVTVS K I D L K M 0 0 0 1 0 0 1 0 0 2 1 2 0 0 2 2 0 0 0 0 0 0 11 1 1225.6918 Q14696 Q14696 96 106 MESDC2 LDLR chaperone MESD yes yes 2;3 0.0018155 63.816 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 0.80331 0.78142 15.387 9 Median 0.75221 0.76446 3.1028 2 0 Median 0.91739 0.84001 18.856 2 0 Median 0.80008 0.79745 5.0731 2 0 Median 0.97301 0.87589 14.309 2 0 Median 0.59675 0.57693 NaN 1 0 Median NaN NaN NaN 0 0 Median 55831000 31605000 24226000 28222000 16462000 11760000 4162200 2246900 1915300 17868000 9961200 7907000 5050000 2613500 2436400 528770 321650 207120 0 0 0 14267 2895 14850 72932;72933;72934;72935;72936;72937;72938;72939;72940 73964;73965;73966;73967;73968;73969;73970;73971;73972;73973;73974;73975;73976;73977;73978 73964 14 IDPTVLLGALPLR RGKVPGRAHRDWYHRIDPTVLLGALPLRSL HRIDPTVLLGALPLRSLTRQLVQDENVRGV R I D L R S 1 1 0 1 0 0 0 1 0 1 4 0 0 0 2 0 1 0 0 1 0 0 13 0 1376.8391 Q8WUK0;E9PQM0 Q8WUK0 41 53 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes no 2 0.002704 46.891 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1.1827 0.94578 23.534 6 Median 0.77156 0.72776 NaN 1 0 Median 1.2644 1.0529 NaN 1 0 Median 0.74523 0.696 NaN 1 0 Median 1.3045 1.0668 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3035 1.0336 27.729 2 0 Median 5135600 2526000 2609600 2285400 1329200 956200 943600 411150 532450 585130 314380 270750 306430 144290 162140 0 0 0 1015100 326960 688110 14268 3491 14851 72941;72942;72943;72944;72945;72946 73979;73980;73981 73981 3 IDQISIEELDIIYK EGNRVYIPCIYVLNKIDQISIEELDIIYKV KIDQISIEELDIIYKVPHCVPISAHHRWNF K I D Y K V 0 0 0 2 0 1 2 0 0 5 1 1 0 0 0 1 0 0 1 0 0 0 14 0 1690.9029 Q9Y295 Q9Y295 250 263 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.00088765 56.783 By MS/MS 1 0.95218 0.82107 NaN 1 Median NaN NaN NaN 0 0 Median 0.95218 0.82107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2632800 1323700 1309200 0 0 0 2632800 1323700 1309200 0 0 0 0 0 0 0 0 0 0 0 0 14269 4382 14852 72947 73982;73983 73982 2 IDQLEGDHQLIQEALIFDNK HLRQYEKSIVNYKPKIDQLEGDHQLIQEAL GDHQLIQEALIFDNKHTNYTMEHIRVGWEQ K I D N K H 1 0 1 3 0 3 2 1 1 3 3 1 0 1 0 0 0 0 0 0 0 0 20 0 2338.1805 P12814;H9KV75;H7C5W8;H0YJW3;H0YJ11 P12814 685 704 ACTN1 Alpha-actinin-1 yes no 3 1.1195E-11 97.457 By MS/MS By MS/MS 1 1 1.0736 0.98778 16.499 2 Median 1.1457 1.11 NaN 1 0 Median 1.006 0.879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18032000 8154300 9878100 9589900 4204700 5385200 8442400 3949600 4492900 0 0 0 0 0 0 0 0 0 0 0 0 14270 1983 14853 72948;72949 73984;73985;73986;73987 73987 4 IDQLQEELLHTQLK SESDKHFRKVSDKEKIDQLQEELLHTQLKY KIDQLQEELLHTQLKYQRILERLEKENKEL K I D L K Y 0 0 0 1 0 3 2 0 1 1 4 1 0 0 0 0 1 0 0 0 0 0 14 0 1706.9203 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;C9JMB8;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4;A0A2R8YE54 A0A2R8Y3X5 109 122 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.013835 24.191 By MS/MS By matching By matching 1 1 1 2.4069 2.08 44.863 3 Plateau 1.078 1.0281 NaN 1 0 Median 2.5463 2.225 NaN 1 0 Median 0.94205 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15418000 5914800 9503300 4005400 2017400 1987900 8901500 2480100 6421300 2511300 1417200 1094100 0 0 0 0 0 0 0 0 0 14271 357 14854 72950;72951;72952 73988 73988 1 IDQVNQLLELDHQK SLLVQCILDNTIHGRIDQVNQLLELDHQKR RIDQVNQLLELDHQKRGGARYTALDKWTNQ R I D Q K R 0 0 1 2 0 3 1 0 1 1 3 1 0 0 0 0 0 0 0 1 0 0 14 0 1691.8842 P61201;B4DIH5 P61201 402 415 COPS2 COP9 signalosome complex subunit 2 yes no 3 0.00024353 65.092 By MS/MS 2 1.3417 1.2913 3.9948 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3417 1.2913 3.9948 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37029000 15718000 21311000 0 0 0 0 0 0 37029000 15718000 21311000 0 0 0 0 0 0 0 0 0 14272 2548 14855 72953;72954 73989;73990 73990 2 IDQVNQLLELDHQKR SLLVQCILDNTIHGRIDQVNQLLELDHQKR IDQVNQLLELDHQKRGGARYTALDKWTNQL R I D K R G 0 1 1 2 0 3 1 0 1 1 3 1 0 0 0 0 0 0 0 1 0 0 15 1 1847.9854 P61201;B4DIH5 P61201 402 416 COPS2 COP9 signalosome complex subunit 2 yes no 4 8.632E-05 64.244 By MS/MS 1 1.5228 1.5424 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5228 1.5424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6287100 2910100 3377000 0 0 0 0 0 0 6287100 2910100 3377000 0 0 0 0 0 0 0 0 0 14273 2548 14856 72955 73991 73991 1 IDQYQGADAVGLEEK ISATPTFLFFRNKVRIDQYQGADAVGLEEK IDQYQGADAVGLEEKIKQHLENDPGSNEDT R I D E K I 2 0 0 2 0 2 2 2 0 1 1 1 0 0 0 0 0 0 1 1 0 0 15 0 1634.7788 O43396;K7ER96;K7EML9 O43396 88 102 TXNL1 Thioredoxin-like protein 1 yes no 2 9.9416E-06 77.593 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.88854 0.79637 34.492 4 Median 0.50526 0.48742 NaN 1 1 Median 0.84184 0.70643 NaN 1 1 Median 0.93783 0.89777 NaN 1 0 Median 1.2865 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16621000 8762300 7859000 4161200 2391400 1769800 5389300 3192300 2197000 4372400 2137900 2234500 2698400 1040700 1657700 0 0 0 0 0 0 14274 1570 14857 72956;72957;72958;72959 73992;73993;73994;73995 73993 4 IDRIEESDQGPYAIILAPTR AFLIPLLVWITTLPKIDRIEESDQGPYAII ESDQGPYAIILAPTRELAQQIEEETIKFGK K I D T R E 2 2 0 2 0 1 2 1 0 4 1 0 0 0 2 1 1 0 1 0 0 0 20 1 2256.175 Q9BUQ8 Q9BUQ8 459 478 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3 2.7018E-12 98.132 By matching By MS/MS By MS/MS 1 1 2 0.75525 0.80327 6.0895 4 Median 0.65288 0.72536 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67792 0.78333 NaN 1 0 Median 0.88585 0.82507 0.22978 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11089000 5866400 5222300 1010000 556670 453340 0 0 0 9222900 4941800 4281100 855830 367970 487860 0 0 0 0 0 0 14275 3842 14858 72960;72961;72962;72963 73996;73997;73998;73999 73997 4 IDRLALLNEK LLTEKDAQIAMMQQRIDRLALLNEKQAASP MMQQRIDRLALLNEKQAASPLEPKELEELR R I D E K Q 1 1 1 1 0 0 1 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1183.6925 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 258 267 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 0.0095448 53.756 By MS/MS 2 1.0567 1.199 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0567 1.199 NaN 1 0 Median NaN NaN NaN 0 0 Median 15158000 4557800 10600000 0 0 0 0 0 0 0 0 0 0 0 0 15158000 4557800 10600000 0 0 0 14276 2905;77 14859 72964;72965 74000;74001 74001 2 IDRLDGAHAPELTK ISSVPTFLFFKNSQKIDRLDGAHAPELTKK KIDRLDGAHAPELTKKVQRHASSGSFLPSA K I D T K K 2 1 0 2 0 0 1 1 1 1 2 1 0 0 1 0 1 0 0 0 0 0 14 1 1534.8104 O76003 O76003 97 110 GLRX3 Glutaredoxin-3 yes yes 3 0.00030001 54.898 By MS/MS By MS/MS 1 1 0.92392 0.92449 11.292 2 Median 0.93459 1.0013 NaN 1 0 Median 0.91337 0.85355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9318000 4734600 4583400 7716300 3909300 3807000 1601700 825270 776420 0 0 0 0 0 0 0 0 0 0 0 0 14277 1715 14860 72966;72967 74002;74003;74004 74004 3 IDRPEAISEER DETIANVPILILGNKIDRPEAISEERLREM LGNKIDRPEAISEERLREMFGLYGQTTGKG K I D E R L 1 2 0 1 0 0 3 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 1 1313.6575 Q9Y6B6;D6RD69;Q9H029;D6R9R5 Q9Y6B6 136 146 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b yes no 3 0.06389 41.644 By MS/MS 1 0.64091 0.54431 NaN 1 Median NaN NaN NaN 0 0 Median 0.64091 0.54431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1810800 976710 834100 0 0 0 1810800 976710 834100 0 0 0 0 0 0 0 0 0 0 0 0 14278 4487 14861 72968 74005 74005 0 IDRTDAISEEK DETISNVPILILGNKIDRTDAISEEKLREI LGNKIDRTDAISEEKLREIFGLYGQTTGKG K I D E K L 1 1 0 2 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 11 1 1275.6307 Q9NR31;H0Y5E8 Q9NR31 136 146 SAR1A GTP-binding protein SAR1a yes no 3 0.02677 23.676 By MS/MS By MS/MS 1 1 0.96031 0.92506 23.658 2 Median 1.0394 1.0935 NaN 1 0 Median 0.88724 0.78257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1645000 757290 887750 898510 405470 493040 746530 351810 394710 0 0 0 0 0 0 0 0 0 0 0 0 14279 4077 14862 72969;72970 74006;74007 74006 2 IDSANMNDDITTSLR INSKASLTYAEAQLRIDSANMNDDITTSLR IDSANMNDDITTSLRGLNKLAKILKKRRIE R I D L R G 1 1 2 3 0 0 0 0 0 2 1 0 1 0 0 2 2 0 0 0 0 0 15 0 1664.7676 Q9Y2L1;G3V1J5 Q9Y2L1 597 611 DIS3 Exosome complex exonuclease RRP44 yes no 2 2.7277E-10 118.48 By MS/MS By MS/MS By MS/MS 2 1 2 1.1561 1.2715 21.189 5 Median 1.1917 1.1372 34.268 2 0 Median NaN NaN NaN 0 0 Median 1.1561 1.2715 NaN 1 0 Median 1.3196 1.1241 22.581 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41878000 19051000 22827000 32414000 14719000 17695000 0 0 0 6057400 2769800 3287600 3406200 1562100 1844100 0 0 0 0 0 0 14280 4384 14863;14864 72971;72972;72973;72974;72975 74008;74009;74010;74011;74012;74013;74014 74008 1955 7 IDSDDALNHDFFWSDPMPSDLK LDLIDKLLVLDPAQRIDSDDALNHDFFWSD NHDFFWSDPMPSDLKGMLSTHLTSMFEYLA R I D L K G 1 0 1 6 0 0 0 0 1 1 2 1 1 2 2 3 0 1 0 0 0 0 22 0 2564.1166 P50750 P50750 304 325 CDK9 Cyclin-dependent kinase 9 yes yes 3 0.037718 11.3 By matching By MS/MS 1 1 0.77972 0.80573 20.222 2 Median 0.71715 0.69838 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84775 0.92958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2858200 1539100 1319100 293030 161590 131440 0 0 0 2565200 1377500 1187600 0 0 0 0 0 0 0 0 0 14281 2422 14865 72976;72977 74015;74016 74015 2 IDSDISGTLK GRNGESSELDLQGIRIDSDISGTLKFACES LQGIRIDSDISGTLKFACESIVEEYEDELI R I D L K F 0 0 0 2 0 0 0 1 0 2 1 1 0 0 0 2 1 0 0 0 0 0 10 0 1047.5448 F8W031;F8VXJ7;Q9Y2B0;F8W1K5;H0YI18 F8W031 125 134 CNPY2 Protein canopy homolog 2 yes no 2 0.00056005 113.62 By MS/MS By MS/MS 1 1 1.2029 1.0795 1.4815 2 Median 1.1341 1.0683 NaN 1 0 Median 1.2759 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37238000 17073000 20165000 21730000 10697000 11034000 15508000 6376500 9131400 0 0 0 0 0 0 0 0 0 0 0 0 14282 1078 14866 72978;72979 74017;74018;74019;74020 74020 4 IDSDLGDAWAFFYK RKITKAREWFHRTVKIDSDLGDAWAFFYKF KIDSDLGDAWAFFYKFELQHGTEEQQEEVR K I D Y K F 2 0 0 3 0 0 0 1 0 1 1 1 0 2 0 1 0 1 1 0 0 0 14 0 1646.7617 O94906 O94906 870 883 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.017642 28.958 By MS/MS 1 0.94502 1.0029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94502 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1946900 954980 991880 0 0 0 0 0 0 1946900 954980 991880 0 0 0 0 0 0 0 0 0 14283 1735 14867 72980 74021;74022 74022 2 IDSILEVVQTGR YLEHGEYEGNLYGTKIDSILEVVQTGRTCI GTKIDSILEVVQTGRTCILDVNPQALKVLR K I D G R T 0 1 0 1 0 1 1 1 0 2 1 0 0 0 0 1 1 0 0 2 0 0 12 0 1328.73 Q9NZW5;B8ZZG1 Q9NZW5 419 430 MPP6 MAGUK p55 subfamily member 6 yes no 2 7.107E-06 120.09 By MS/MS By matching 2 1 0.97158 0.94073 29.222 3 Median 0.93224 0.91238 4.3266 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7095 1.5093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7093400 3740800 3352600 6966600 3696600 3270100 0 0 0 0 0 0 126770 44206 82561 0 0 0 0 0 0 14284 647 14868 72981;72982;72983 74023;74024 74023 2 IDSIPHLNNSTPLVDPSVYGYGVQK GFVDALHRVRQIAAKIDSIPHLNNSTPLVD TPLVDPSVYGYGVQKRPLDDGVGNQLGALV K I D Q K R 0 0 2 2 0 1 0 2 1 2 2 1 0 0 3 3 1 0 2 3 0 0 25 0 2712.3759 Q96I24 Q96I24 33 57 FUBP3 Far upstream element-binding protein 3 yes yes 3 1.1098E-21 95.926 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 4 2 1 0.62821 0.60276 10.249 10 Median 0.6066 0.56917 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61845 0.6005 1.3279 2 0 Median 0.80369 0.67841 14.805 4 0 Median 0.59818 0.58496 3.4439 2 0 Median 0.73043 0.62245 NaN 1 0 Median 183400000 108510000 74884000 12200000 7326300 4873600 0 0 0 125820000 75015000 50800000 9964000 5345200 4618800 34767000 20479000 14288000 650470 347180 303290 14285 3673 14869 72984;72985;72986;72987;72988;72989;72990;72991;72992;72993 74025;74026;74027;74028;74029;74030;74031;74032;74033;74034;74035;74036 74029 12 IDSLSAQLSQLQK LVGAAHEELQQSRIRIDSLSAQLSQLQKQL IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I D Q K Q 1 0 0 1 0 3 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1429.7777 P02545;Q3BDU5 P02545 299 311 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 1.496E-06 157.38 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 6 4 1.2037 1.1177 18.74 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2037 1.1618 12.292 5 0 Median 1.5941 1.3921 36.666 4 0 Median 1.0693 1.0605 7.1606 6 0 Median 1.3465 1.1243 3.9745 4 0 Median 332390000 151070000 181320000 0 0 0 0 0 0 197980000 89262000 108720000 5680100 2000700 3679400 120460000 56289000 64170000 8267800 3516800 4750900 14286 1834;3010 14870 72994;72995;72996;72997;72998;72999;73000;73001;73002;73003;73004;73005;73006;73007;73008;73009;73010;73011;73012 74037;74038;74039;74040;74041;74042;74043;74044;74045;74046;74047;74048;74049;74050;74051;74052;74053;74054;74055 74041 19 IDSPGFKPASQQVYR YPPYSPQAQPQPIHRIDSPGFKPASQQVYR IDSPGFKPASQQVYRKDPYPEEMMRQNHVL R I D Y R K 1 1 0 1 0 2 0 1 0 1 0 1 0 1 2 2 0 0 1 1 0 0 15 1 1691.8631 A0A087X0K9;G5E9E7 A0A087X0K9 898 912 TJP1 yes no 3 1.8968E-08 101.62 By MS/MS By MS/MS By MS/MS 1 2 2 0.63857 0.72482 10.914 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53683 0.64354 NaN 1 0 Median 0.83182 0.80302 2.8341 2 2 Median 0.60481 0.68649 7.6829 2 2 Median NaN NaN NaN 0 0 Median 37919000 22449000 15470000 0 0 0 0 0 0 10254000 6413600 3840600 6318600 3354200 2964400 21346000 12681000 8664800 0 0 0 14287 104 14871 73013;73014;73015;73016;73017 74056;74057;74058;74059;74060 74057 5 IDTASLGDSTDSYIEVLDGSR HMGPKVFMNCAGFLKIDTASLGDSTDSYIE GDSTDSYIEVLDGSRVHPETYEWARKMAVD K I D S R V 1 1 0 4 0 0 1 2 0 2 2 0 0 0 0 4 2 0 1 1 0 0 21 0 2213.0336 Q7KZ85 Q7KZ85 1037 1057 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0012078 28.632 By matching By matching By MS/MS 1 1 2 1.0269 1.082 33.636 4 Median 1.0761 1.0762 NaN 1 0 Median 1.3971 1.2036 NaN 1 0 Median 0.73814 0.79195 44.908 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052500 2079800 1972700 824540 469810 354730 719280 320370 398920 2508600 1289600 1219000 0 0 0 0 0 0 0 0 0 14288 3213 14872 73018;73019;73020;73021 74061 74061 1 IDTGWLDR YLIKLLETESFQMNRIDTGWLDRLIAEKVQ ESFQMNRIDTGWLDRLIAEKVQAERPDTML R I D D R L 0 1 0 2 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 8 0 974.48214 Q13085 Q13085 608 615 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.0035841 87.323 By MS/MS By MS/MS 1 2 1.3778 1.1735 20.723 3 Median 0.99173 0.99183 NaN 1 0 Median 1.5623 1.3257 17.251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9143500 3992800 5150600 5433300 2604700 2828700 3710100 1388200 2322000 0 0 0 0 0 0 0 0 0 0 0 0 14289 2784 14873 73022;73023;73024 74062;74063 74062 2 IDTIEIITDR TEEHHLRDYFEEYGKIDTIEIITDRQSGKK EEYGKIDTIEIITDRQSGKKRGFGFVTFDD K I D D R Q 0 1 0 2 0 0 1 0 0 4 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1187.6398 P22626;A0A087WUI2 P22626 138 147 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 1.4025E-11 163.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 8 4 10 8 1.1636 1.0591 29.323 34 Median 1.3675 1.3605 NaN 1 1 Median 1.2714 1.106 10.2 3 0 Median 1.0245 1.0832 22.769 8 1 Median 1.3731 1.1408 8.8699 4 0 Median 1.0543 1.0591 12.884 10 2 Median 1.2589 0.99479 49.248 8 0 Median 1629100000 757540000 871580000 9112500 3543800 5568700 67248000 29050000 38197000 742700000 349720000 392980000 82777000 34295000 48483000 577560000 273800000 303760000 149720000 67120000 82596000 14290 2103 14874 73025;73026;73027;73028;73029;73030;73031;73032;73033;73034;73035;73036;73037;73038;73039;73040;73041;73042;73043;73044;73045;73046;73047;73048;73049;73050;73051;73052;73053;73054;73055;73056;73057;73058;73059 74064;74065;74066;74067;74068;74069;74070;74071;74072;74073;74074;74075;74076;74077;74078;74079;74080;74081;74082;74083;74084;74085;74086;74087;74088;74089;74090;74091;74092;74093;74094;74095;74096;74097;74098;74099;74100;74101;74102;74103;74104;74105;74106;74107;74108;74109;74110;74111 74096 48 IDTMGTYHGMTLK DQERFKGKEETEGFKIDTMGTYHGMTLKSV FKIDTMGTYHGMTLKSVTEGASARKTQTPA K I D L K S 0 0 0 1 0 0 0 2 1 1 1 1 2 0 0 0 3 0 1 0 0 0 13 0 1466.6898 Q6P1J9;A0A3B3IRP5;A0A2R8YHB3 Q6P1J9 309 321 CDC73 Parafibromin yes no 2 0.020199 46.819 By MS/MS 1 0.57389 0.57415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57389 0.57415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5464000 3689000 1775000 0 0 0 0 0 0 5464000 3689000 1775000 0 0 0 0 0 0 0 0 0 14291 3150 14875 73060 74112 74112 1 IDTRNELESYAYSLK DAEKFAEEDKKLKERIDTRNELESYAYSLK IDTRNELESYAYSLKNQIGDKEKLGGKLSS R I D L K N 1 1 1 1 0 0 2 0 0 1 2 1 0 0 0 2 1 0 2 0 0 0 15 1 1800.8894 P11021 P11021 559 573 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.00020289 47.639 By MS/MS By matching 2 1 1.2466 1.2833 33.768 3 Median 1.2028 1.2218 6.9409 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.361 2.1794 NaN 1 0 Median 59596000 26303000 33293000 59344000 26212000 33132000 0 0 0 0 0 0 0 0 0 0 0 0 252310 91813 160500 14292 1948 14876 73061;73062;73063 74113;74114;74115;74116 74116 4 IDVAFVDR HSNVVILTTSNITEKIDVAFVDRADIKQYI TSNITEKIDVAFVDRADIKQYIGPPSAAAI K I D D R A 1 1 0 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 933.49198 Q15645 Q15645 305 312 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.026169 42.109 By MS/MS 1 1.9336 1.6327 NaN 1 Median NaN NaN NaN 0 0 Median 1.9336 1.6327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6737400 2791300 3946000 0 0 0 6737400 2791300 3946000 0 0 0 0 0 0 0 0 0 0 0 0 14293 2960 14877 73064 74117 74117 1 IDVDAPDIDIHGPDAK EGDLKGPALDIKGPKIDVDAPDIDIHGPDA DVDAPDIDIHGPDAKLKGPKLKMPDMHVNM K I D A K L 2 0 0 5 0 0 0 1 1 3 0 1 0 0 2 0 0 0 0 1 0 0 16 0 1689.821 Q09666 Q09666 3260 3275 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 3.5696E-05 51.888 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.79902 0.82972 17.232 5 Median 0.79902 0.80184 NaN 1 0 Median 1.0877 0.95352 15.188 2 0 Median 0.77765 0.82972 NaN 1 0 Median 0.69154 0.65507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63143000 32532000 30611000 27039000 16017000 11023000 13097000 6419800 6677200 21862000 9482900 12379000 1145000 612410 532580 0 0 0 0 0 0 14294 2749 14878 73065;73066;73067;73068;73069 74118;74119;74120;74121 74119 4 IDVGEAEPR TVEKHPDADSLYVEKIDVGEAEPRTVVSGL SLYVEKIDVGEAEPRTVVSGLVQFVPKEEL K I D P R T 1 1 0 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 984.48762 P54577 P54577 392 400 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 2 0.012642 60.91 By MS/MS By MS/MS 1 1 1.1654 1.1716 15.078 2 Median 1.0995 1.0532 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2353 1.3035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9573100 4627000 4946100 8155900 3885300 4270600 0 0 0 1417300 741710 675570 0 0 0 0 0 0 0 0 0 14295 2482 14879 73070;73071 74122;74123 74122 2 IDVLDPEELKSESAK DQIYSEFRKNFETLRIDVLDPEELKSESAK IDVLDPEELKSESAKEKWRPFCLKFNGIVE R I D A K E 1 0 0 2 0 0 3 0 0 1 2 2 0 0 1 2 0 0 0 1 0 0 15 1 1671.8567 Q9BVG4;A6NDF3 Q9BVG4 84 98 PBDC1 Protein PBDC1 yes no 3 0.019062 22.154 By matching By matching By MS/MS By matching 1 1 1 1 1.346 1.3792 31.875 4 Linear 1.0793 1.0504 NaN 1 0 Median 0.90908 0.81916 NaN 1 0 Median 1.4743 1.5445 NaN 1 0 Median 0.86814 0.76229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9937200 4753100 5184100 2744100 1458000 1286100 2210200 1161800 1048300 4081100 1686500 2394700 901850 446860 454980 0 0 0 0 0 0 14296 3852 14880 73072;73073;73074;73075 74124 74124 1 IDVLLQQIEELGSEGK PTGKNEEKIQVLTDKIDVLLQQIEELGSEG DVLLQQIEELGSEGKVEEAQGMMKLVEQLK K I D G K V 0 0 0 1 0 2 3 2 0 2 3 1 0 0 0 1 0 0 0 1 0 0 16 0 1769.9411 J3KPP4;O95232 J3KPP4 136 151 LUC7L3 Luc7-like protein 3 yes no 2 0.00034546 48.004 By MS/MS By matching 1 1 1.1309 1.0693 3.5407 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0799 1.0964 NaN 1 0 Median 1.1843 1.0429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4110000 2021900 2088000 0 0 0 0 0 0 3832500 1906400 1926100 277450 115490 161960 0 0 0 0 0 0 14297 1309 14881 73076;73077 74125;74126 74126 2 IDVLLQQIEELGSEGKVEEAQGMMK PTGKNEEKIQVLTDKIDVLLQQIEELGSEG LGSEGKVEEAQGMMKLVEQLKEERELLRST K I D M K L 1 0 0 1 0 3 5 3 0 2 3 2 2 0 0 1 0 0 0 2 0 0 25 1 2773.3878 J3KPP4;O95232 J3KPP4 136 160 LUC7L3 Luc7-like protein 3 yes no 3 0.036871 11.966 By MS/MS 2 1.1962 1.2559 5.0414 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1962 1.2559 5.0414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11302000 5110800 6191100 0 0 0 0 0 0 11302000 5110800 6191100 0 0 0 0 0 0 0 0 0 14298 1309 14882 73078;73079 74127 74127 1 IDVSIEAASGGK LNTKVTGATKKSDGKIDVSIEAASGGKAEV DGKIDVSIEAASGGKAEVITCDVLLVCIGR K I D G K A 2 0 0 1 0 0 1 2 0 2 0 1 0 0 0 2 0 0 0 1 0 0 12 0 1145.5928 E9PEX6;P09622 E9PEX6 266 277 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 3.8785E-06 106.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.3434 1.1356 25.174 5 Median 0.8703 0.80294 NaN 1 0 Median 1.3434 1.1356 NaN 1 0 Median 1.4935 1.4843 NaN 1 0 Median 1.3665 1.1589 24.715 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68249000 32108000 36141000 23798000 12512000 11286000 29833000 12537000 17295000 6412400 3772800 2639600 8205500 3285900 4919600 0 0 0 0 0 0 14299 915 14883 73080;73081;73082;73083;73084 74128;74129;74130;74131;74132 74128 5 IDVSVAAGHTDR CRKSAIIETYVMDSRIDVSVAAGHTDRSGL DSRIDVSVAAGHTDRSGLGSVLRDLVKPGD R I D D R S 2 1 0 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 12 0 1239.6208 A0A087WT45;Q4V328 A0A087WT45 714 725 GRIPAP1 GRIP1-associated protein 1 yes no 2;3 0.032379 33.195 By MS/MS By MS/MS By MS/MS 1 3 2 1.3062 1.1309 26.819 6 Median 0.87048 0.87468 NaN 1 0 Median 1.4079 1.2253 14.482 3 0 Median NaN NaN NaN 0 0 Median 1.3772 1.1765 48.389 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6393200 2726100 3667200 1221900 590530 631370 3497800 1530500 1967200 0 0 0 1673600 605000 1068600 0 0 0 0 0 0 14300 15 14884 73085;73086;73087;73088;73089;73090 74133;74134;74135 74134 2 IDVTAPDVSIEEPEGK DVNLPKADVDISGPKIDVTAPDVSIEEPEG DVTAPDVSIEEPEGKLKGPKFKMPEMNIKV K I D G K L 1 0 0 2 0 0 3 1 0 2 0 1 0 0 2 1 1 0 0 2 0 0 16 0 1697.836 Q09666 Q09666 785 800 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.4417E-10 135.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 4 1 0.85479 0.82611 21.491 10 Median 0.84692 0.83268 6.5965 2 0 Median 1.0783 0.95082 26.222 2 0 Median 0.84146 0.89575 NaN 1 0 Median 0.83296 0.75552 7.4566 4 0 Median 1.3707 1.4346 NaN 1 0 Median NaN NaN NaN 0 0 Median 179930000 92973000 86957000 99080000 51630000 47451000 14475000 7729900 6745500 45347000 23939000 21408000 11571000 6083300 5488100 9455900 3590900 5864900 0 0 0 14301 2749 14885 73091;73092;73093;73094;73095;73096;73097;73098;73099;73100 74136;74137;74138;74139;74140;74141;74142;74143;74144;74145;74146;74147;74148;74149;74150 74139 15 IDVVVNNAGILR EGEKVVKTALDAFGRIDVVVNNAGILRDRS FGRIDVVVNNAGILRDRSFARISDEDWDII R I D L R D 1 1 2 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1281.7405 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 93 104 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 3.7171E-06 161.92 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 1.0931 1.0244 15.417 13 Median 1.0972 1.0247 12.216 3 0 Median 1.1975 1.0246 14.717 4 0 Median 1.0155 1.0206 4.0546 3 0 Plateau 1.2483 1.0632 30.292 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137510000 62770000 74735000 73839000 34425000 39414000 17882000 7359100 10523000 42280000 19539000 22741000 3504200 1446700 2057500 0 0 0 0 0 0 14302 393 14886 73101;73102;73103;73104;73105;73106;73107;73108;73109;73110;73111;73112;73113 74151;74152;74153;74154;74155;74156;74157;74158;74159;74160;74161;74162;74163 74157 13 IDYGEYMDK YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ IYLEGKIDYGEYMDKNNVRRQATTIIADNI K I D D K N 0 0 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 9 0 1132.4747 Q04837;A0A0G2JLD8;E7EUY5 Q04837 114 122 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0032693 66.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 1.3448 1.1801 15.109 8 Median 1.0297 0.97241 0.056781 2 2 Median 1.4977 1.2331 NaN 1 0 Median 1.1834 1.1222 NaN 1 0 Median 1.3968 1.1294 NaN 1 0 Median 1.2948 1.5031 NaN 1 0 Median 1.6123 1.3041 0.17066 2 0 Median 83597000 36938000 46659000 21540000 10038000 11502000 11392000 4677300 6714800 38114000 17759000 20355000 3666000 1536600 2129500 1267600 523320 744290 7616900 2403900 5213000 14303 2713 14887 73114;73115;73116;73117;73118;73119;73120;73121 74164;74165;74166;74167;74168;74169;74170;74171;74172 74166 9 IDYGEYMDKNNVR YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ GKIDYGEYMDKNNVRRQATTIIADNIIFLS K I D V R R 0 1 2 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 1 0 0 13 1 1615.7301 Q04837;A0A0G2JLD8;E7EUY5 Q04837 114 126 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2;3 1.6829E-07 140.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 3 1.1144 1.1487 13.641 12 Median 1.0156 0.9973 9.0484 3 0 Median 1.3321 1.1753 12.061 3 0 Median 1.0814 1.116 0.83681 2 0 Median 1.6234 1.3202 NaN 1 0 Median 1.1179 1.2628 9.162 3 0 Median NaN NaN NaN 0 0 Median 197260000 90625000 106640000 42688000 19146000 23542000 30900000 12502000 18398000 106640000 51293000 55350000 611860 255740 356120 16421000 7428300 8992800 0 0 0 14304 2713 14888 73122;73123;73124;73125;73126;73127;73128;73129;73130;73131;73132;73133 74173;74174;74175;74176;74177;74178;74179;74180;74181;74182;74183;74184;74185;74186 74175 14 IDYGEYMDKNNVRR YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ KIDYGEYMDKNNVRRQATTIIADNIIFLSD K I D R R Q 0 2 2 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 1 0 0 14 2 1771.8312 Q04837;A0A0G2JLD8;E7EUY5 Q04837 114 127 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 3;4 0.00023801 60.628 By MS/MS By matching By MS/MS By matching 2 1 2 4 1.1601 1.4294 22.526 9 Median 0.86199 0.99964 11.387 2 1 Median 1.3901 1.4336 NaN 1 0 Median 1.1577 1.3524 7.8296 2 0 Median NaN NaN NaN 0 0 Median 1.218 1.5063 18.391 4 0 Median NaN NaN NaN 0 0 Median 76695000 34941000 41754000 22839000 11292000 11547000 5034600 1594200 3440500 39783000 18179000 21604000 0 0 0 9038300 3875000 5163300 0 0 0 14305 2713 14889 73134;73135;73136;73137;73138;73139;73140;73141;73142 74187;74188;74189;74190;74191 74187 5 IDYIAGLDSR IGLLARHLKATHGGRIDYIAGLDSRGFLFG THGGRIDYIAGLDSRGFLFGPSLAQELGLG R I D S R G 1 1 0 2 0 0 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1121.5717 P07741;H3BQB1;H3BQF1 P07741 58 67 APRT Adenine phosphoribosyltransferase yes no 2 0.00034968 105.52 By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 1.2339 1.1126 27.997 11 Median 1.1926 1.1153 13.543 4 0 Median 1.3454 1.1264 18.091 4 0 Median 0.67703 0.70518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2299 0.94953 67.583 2 0 Median 392880000 182240000 210640000 339620000 159660000 179960000 49244000 20469000 28775000 864220 349620 514590 0 0 0 0 0 0 3150800 1757500 1393400 14306 1891 14890 73143;73144;73145;73146;73147;73148;73149;73150;73151;73152;73153;73154 74192;74193;74194;74195;74196;74197;74198;74199;74200;74201 74193 10 IDYPPEFHQRPGYLKDPR RPEDYDIHNSRKKPRIDYPPEFHQRPGYLK PPEFHQRPGYLKDPRYQEVDRRFSGVRRDV R I D P R Y 0 2 0 2 0 1 1 1 1 1 1 1 0 1 4 0 0 0 2 0 0 0 18 2 2227.1174 Q96MU7;J3QR07 Q96MU7 551 568 YTHDC1 YTH domain-containing protein 1 yes no 3;5 0.034313 14.254 By MS/MS 2 0.53567 0.62664 22.19 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53567 0.62664 22.19 2 0 Median NaN NaN NaN 0 0 Median 15542000 9826700 5715700 0 0 0 0 0 0 0 0 0 0 0 0 15542000 9826700 5715700 0 0 0 14307 1347 14891 73155;73156 74202;74203 74202 2 IEADSESQEDIIR LQTDGNRSSHSRLGRIEADSESQEDIIRNI GRIEADSESQEDIIRNIARHLAQVGDSMDR R I E I R N 1 1 0 2 0 1 3 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 13 0 1503.7053 P55957 P55957 72 84 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes yes 2 1.0211E-06 140.3 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.92339 0.8932 25.03 3 Median 0.92339 0.8932 NaN 1 0 Median 0.91679 0.7605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1748 1.2426 NaN 1 1 Median NaN NaN NaN 0 0 Median 20112000 10086000 10026000 14007000 7162700 6843900 4439000 2268700 2170200 0 0 0 0 0 0 1666500 654800 1011700 0 0 0 14308 2505 14892 73157;73158;73159;73160 74204;74205;74206;74207;74208;74209 74208 6 IEAGYIQTGDR DVFKDQGSGFCITGKIEAGYIQTGDRLLAM ITGKIEAGYIQTGDRLLAMPPNETCTVKGI K I E D R L 1 1 0 1 0 1 1 2 0 2 0 0 0 0 0 0 1 0 1 0 0 0 11 0 1221.599 B7Z524;H0YDX7;J3QT46;Q9Y450;H0YES5 B7Z524 345 355 HBS1L HBS1-like protein yes no 2 0.00042582 102.06 By MS/MS 1 1.0581 0.87268 NaN 1 Median NaN NaN NaN 0 0 Median 1.0581 0.87268 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7682000 3681600 4000400 0 0 0 7682000 3681600 4000400 0 0 0 0 0 0 0 0 0 0 0 0 14309 632 14893 73161 74210 74210 1 IEAHFDAR TAQISESRQTRIEKKIEAHFDARSIATVEM QTRIEKKIEAHFDARSIATVEMVIDGAAGQ K I E A R S 2 1 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 8 0 957.46683 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42 A0A0A0MRA3 225 232 TTN Titin yes no 2 0.010267 59.205 By MS/MS 1 0.92558 0.89436 NaN 1 Median 0.92558 0.89436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6386300 3299100 3087200 6386300 3299100 3087200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14310 155 14894 73162 74211 74211 1 IEAINQAIANEYEVR KPLLKKPMGPAHWEKIEAINQAIANEYEVR IEAINQAIANEYEVRRKLLIKRLDVTVQSF K I E V R R 3 1 2 0 0 1 3 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 15 0 1731.8792 Q8NCA5;E9PH82 Q8NCA5 204 218 FAM98A Protein FAM98A yes no 2 9.4746E-10 112.13 By MS/MS By matching By MS/MS 1 2 1 1.2209 1.1482 25.584 4 Median 1.3954 1.3511 NaN 1 0 Median 1.016 0.89157 21.589 2 0 Median 1.2551 1.2693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15529000 7064600 8464400 5681400 2375100 3306300 1301500 662940 638510 8546200 4026600 4519600 0 0 0 0 0 0 0 0 0 14311 3417 14895 73163;73164;73165;73166 74212;74213;74214 74214 3 IEAITSSGQMGSFIR FWKMLILIKEDYFPRIEAITSSGQMGSFIR IEAITSSGQMGSFIRLKQFLEKCLQHKDIP R I E I R L 1 1 0 0 0 1 1 2 0 3 0 0 1 1 0 3 1 0 0 0 0 0 15 0 1595.7977 Q53GS7 Q53GS7 656 670 GLE1 Nucleoporin GLE1 yes yes 2 1.1537E-05 76.655 By MS/MS 1 1.0303 1.0817 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0303 1.0817 NaN 1 1 Median NaN NaN NaN 0 0 Median 4423100 2213300 2209800 0 0 0 0 0 0 0 0 0 0 0 0 4423100 2213300 2209800 0 0 0 14312 3031 14896 73167 74215 74215 1 IEALEQENSELER LLQKKITNLKITCEKIEALEQENSELEREN EKIEALEQENSELERENRKLKKTLDSFKNL K I E E R E 1 1 1 0 0 1 5 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1558.7475 Q3V6T2;A0A2R8YGU1;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8YG52;A0A087WXD9 Q3V6T2 658 670 CCDC88A Girdin yes no 2 0.0019808 49.5 By MS/MS 1 1.094 0.91032 NaN 1 Median NaN NaN NaN 0 0 Median 1.094 0.91032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1465800 654070 811690 0 0 0 1465800 654070 811690 0 0 0 0 0 0 0 0 0 0 0 0 14313 367 14897 73168 74216 74216 1 IEALQNHENESVYK EKLSIMIEECGGLDKIEALQNHENESVYKA KIEALQNHENESVYKASLSLIEKYFSVEEE K I E Y K A 1 0 2 0 0 1 3 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1672.8057 P52292 P52292 473 486 KPNA2 Importin subunit alpha-1 yes yes 2;3 6.252E-08 113.72 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 3 1 3 1 2 1.237 1.0609 25.241 11 Median 1.6676 1.6054 NaN 1 0 Median 1.1335 0.97897 36.117 3 0 Median 1.3373 1.3012 NaN 1 0 Median 1.237 1.0609 18.53 3 0 Median 0.78855 0.84098 NaN 1 0 Median 1.1374 0.95899 15.158 2 0 Median 50192000 22468000 27725000 2848700 989560 1859100 7063200 3060700 4002500 10719000 4393300 6325500 24187000 11002000 13185000 3079300 1890400 1188900 2295500 1131800 1163700 14314 2448 14898 73169;73170;73171;73172;73173;73174;73175;73176;73177;73178;73179 74217;74218;74219;74220;74221;74222;74223 74220 7 IEANEALVK VGTADEATRAEIQIRIEANEALVKALE___ AEIQIRIEANEALVKALE____________ R I E V K A 2 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 985.54441 P30049 P30049 157 165 ATP5D ATP synthase subunit delta, mitochondrial yes yes 2 0.00041503 131.06 By MS/MS By MS/MS By matching 1 2 1 1.2713 1.0427 10.322 4 Median 1.0282 0.96845 NaN 1 0 Median 1.3512 1.1351 11.997 2 0 Median NaN NaN NaN 0 0 Median 1.2766 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40735000 18581000 22153000 21761000 10670000 11091000 18170000 7607900 10562000 0 0 0 804290 303940 500350 0 0 0 0 0 0 14315 2184 14899 73180;73181;73182;73183 74224;74225;74226;74227;74228 74228 5 IEANVNSVVTEEKDDAVTSAGSEEK SEDRAADLLAVHAVKIEANVNSVVTEEKDD EEKDDAVTSAGSEEKCDGSLSRDSEIVEGT K I E E K C 3 0 2 2 0 0 5 1 0 1 0 2 0 0 0 3 2 0 0 4 0 0 25 1 2620.2352 Q8NFC6 Q8NFC6 1638 1662 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 6.4689E-21 86.551 By MS/MS By matching 2 2 0.97435 1.0227 7.1075 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91388 1.0455 6.9637 2 0 Median 1.0162 0.98942 8.5251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21276000 10222000 11054000 0 0 0 0 0 0 19730000 9542300 10187000 1546300 679590 866740 0 0 0 0 0 0 14316 3434 14900 73184;73185;73186;73187 74229;74230 74229 2 IEAPWAR HLLRNLLTGLVRHERIEAPWARVDEMRGYA TGLVRHERIEAPWARVDEMRGYAEKEKDLI R I E A R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 7 0 841.44464 E9PKV2;Q9NRX2 E9PKV2 42 48 MRPL17 39S ribosomal protein L17, mitochondrial yes no 2 0.017766 64.776 By MS/MS By MS/MS By matching 1 1 1 0.84921 0.84734 25.195 3 Median 0.84921 0.84734 NaN 1 0 Median 1.4721 1.2319 NaN 1 0 Median 0.814 0.76274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5657000 2967500 2689500 3619600 2005400 1614200 567710 243960 323750 1469700 718090 751620 0 0 0 0 0 0 0 0 0 14317 952 14901 73188;73189;73190 74231;74232 74231 2 IEATNPDILK I E L K 1 0 1 1 0 0 1 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 10 0 1112.6077 REV__Q9UPN3 yes no 2 0.0041692 54.157 By MS/MS 1 1.0173 0.87724 NaN 1 Median NaN NaN NaN 0 0 Median 1.0173 0.87724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2692900 1191300 1501600 0 0 0 2692900 1191300 1501600 0 0 0 0 0 0 0 0 0 0 0 0 + 14318 4524 14902 73191 74233;74234 74234 2 IEAVEMHLTR GREPMEEKLLEIQGKIEAVEMHLTREHMKR EIQGKIEAVEMHLTREHMKRVLGEVYLHTW K I E T R E 1 1 0 0 0 0 2 0 1 1 1 0 1 0 0 0 1 0 0 1 0 0 10 0 1197.6176 Q9UKN8 Q9UKN8 676 685 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2;3 9.1122E-05 85.958 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.1436 1.2149 39.548 7 Median 2.0469 2.0223 NaN 1 0 Median 2.1913 1.9853 NaN 1 0 Median 1.0188 1.0702 28.909 3 0 Median 1.2157 1.0452 26.769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20497000 9967600 10530000 2095400 644850 1450600 417350 133300 284050 15918000 8182700 7735200 2066400 1006700 1059700 0 0 0 0 0 0 14319 4314 14903 73192;73193;73194;73195;73196;73197;73198 74235;74236;74237;74238;74239;74240 74237 6 IEAVYVSR KHARGRLVLYDRPLKIEAVYVSRRRSRSPL LYDRPLKIEAVYVSRRRSRSPLDKDTYPPS K I E S R R 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 2 0 0 8 0 935.50763 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 203 210 RBM15 Putative RNA-binding protein 15 yes no 2 0.0044852 81.296 By MS/MS 1 0.97076 1.0394 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97076 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4020200 1987600 2032600 0 0 0 0 0 0 4020200 1987600 2032600 0 0 0 0 0 0 0 0 0 14320 60 14904 73199 74241 74241 1 IECDDKGDGSCDVR VGTLGFSVEGPSQAKIECDDKGDGSCDVRY KIECDDKGDGSCDVRYWPQEAGEYAVHVLC K I E V R Y 0 1 0 4 2 0 1 2 0 1 0 1 0 0 0 1 0 0 0 1 0 0 14 1 1624.6457 P21333;Q60FE5;A0A087WWY3;Q14315 P21333 621 634 FLNA;FLNC Filamin-A;Filamin-C no no 3 1.2599E-06 95.264 By MS/MS 1 0.92135 0.86288 NaN 1 Median NaN NaN NaN 0 0 Median 0.92135 0.86288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4017600 2135700 1882000 0 0 0 4017600 2135700 1882000 0 0 0 0 0 0 0 0 0 0 0 0 14321 2088;3120;2871 14905 73200 74242;74243 74243 2 IEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI K I E E R R 0 1 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 920.46035 P46781;B5MCT8;C9JM19 P46781 102 108 RPS9 40S ribosomal protein S9 yes no 2 0.0015238 131.04 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 2 1.3132 1.1017 10.906 9 Median 1.1911 1.1645 16.258 2 0 Median 1.3668 1.1502 21.404 2 0 Median 1.322 1.2698 NaN 1 0 Median 1.3945 1.1518 NaN 1 0 Median 1.0411 1.1017 NaN 1 0 Median 1.3497 1.0683 2.2934 2 0 Median 196270000 86832000 109430000 90645000 40772000 49874000 31340000 14188000 17153000 18960000 7896100 11064000 1069600 448860 620760 9754200 4484000 5270200 44498000 19044000 25454000 14322 2345 14906 73201;73202;73203;73204;73205;73206;73207;73208;73209 74244;74245;74246;74247;74248;74249;74250 74244 7 IEDFLERR LDEGKMKLDYILGLKIEDFLERRLQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH K I E R R L 0 2 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1076.5615 P46781;B5MCT8;C9JM19 P46781 102 109 RPS9 40S ribosomal protein S9 yes no 2 0.017993 54.549 By MS/MS 1 0.97624 0.82909 NaN 1 Median NaN NaN NaN 0 0 Median 0.97624 0.82909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9191900 4301600 4890200 0 0 0 9191900 4301600 4890200 0 0 0 0 0 0 0 0 0 0 0 0 14323 2345 14907 73210 74251 74251 1 IEDGISSTLPSK DYTRNASNLERNDLRIEDGISSTLPSKESR DLRIEDGISSTLPSKESRRKGGLDYLKQVE R I E S K E 0 0 0 1 0 0 1 1 0 2 1 1 0 0 1 3 1 0 0 0 0 0 12 0 1245.6452 Q86V48;E5RFK8 Q86V48 242 253 LUZP1 Leucine zipper protein 1 yes no 2 0.016133 34.532 By MS/MS 1 1.1182 0.95831 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1182 0.95831 NaN 1 0 Median 1411100 639850 771280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1411100 639850 771280 14324 3285 14908 73211 74252 74252 1 IEDGNDFGVAIQEK KCILVITWIQHLIPKIEDGNDFGVAIQEKV KIEDGNDFGVAIQEKVLERVNAVKTKVEAF K I E E K V 1 0 1 2 0 1 2 2 0 2 0 1 0 1 0 0 0 0 0 1 0 0 14 0 1533.7311 A0A087X1Z3;Q9UL46;H0YM70;H0YKU2 A0A087X1Z3 147 160 PSME2 Proteasome activator complex subunit 2 yes no 2 2.5489E-05 85.958 By MS/MS 2 0.90939 0.87846 26.829 2 Median NaN NaN NaN 0 0 Median 0.90939 0.87846 26.829 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4090000 1893500 2196500 0 0 0 4090000 1893500 2196500 0 0 0 0 0 0 0 0 0 0 0 0 14325 125 14909 73212;73213 74253;74254 74254 2 IEDGNNFGVAVQEK QLNLVTTWLQLQIPRIEDGNNFGVAVQEKV RIEDGNNFGVAVQEKVFELMTSLHTKLEGF R I E E K V 1 0 2 1 0 1 2 2 0 1 0 1 0 1 0 0 0 0 0 2 0 0 14 0 1518.7314 Q06323;H0YLU2 Q06323 142 155 PSME1 Proteasome activator complex subunit 1 yes no 2 1.141E-05 103.08 By MS/MS 3 1.3985 1.1737 40.091 2 Median NaN NaN NaN 0 0 Median 1.3985 1.1737 40.091 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21098000 9201100 11897000 0 0 0 21098000 9201100 11897000 0 0 0 0 0 0 0 0 0 0 0 0 14326 2724 14910 73214;73215;73216 74255;74256;74257 74255 3 IEDLEEGQQVIR KDLMHGLITLMLDSRIEDLEEGQQVIRSVN DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ R I E I R S 0 1 0 1 0 2 3 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1427.7256 Q14008 Q14008 1655 1666 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 1.5225E-111 226.76 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 2 4 1 2 1.0646 0.96285 14.676 12 Median 1.011 0.95983 7.7405 2 1 Median 0.86837 0.74198 NaN 1 0 Median 0.92005 0.98974 0.3305 2 0 Median 1.2057 1.0342 15.796 4 0 Median 1.1999 1.2438 NaN 1 1 Median 1.1292 0.92973 1.3864 2 1 Median 75786000 36034000 39752000 21747000 10987000 10760000 5782600 2771500 3011100 6584100 3430600 3153600 31526000 14893000 16633000 7135200 2576600 4558600 3011300 1375500 1635800 14327 2850 14911 73217;73218;73219;73220;73221;73222;73223;73224;73225;73226;73227;73228;73229 74258;74259;74260;74261;74262;74263;74264;74265;74266;74267;74268 74259 11 IEDLSQQAQLAAAEK KSPASDTYIVFGEAKIEDLSQQAQLAAAEK IEDLSQQAQLAAAEKFKVQGEAVSNIQENT K I E E K F 4 0 0 1 0 3 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1613.8261 F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3;F8W1N5;F8VNW4 F8VZJ2 49 63 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2;3 4.4365E-14 177.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 3 4 1 1.0777 0.98559 21.748 20 Median 1.0835 1.0111 7.3626 6 1 Median 1.0156 0.8663 22.616 6 0 Median 1.1482 1.1095 6.9849 3 0 Median 1.0775 0.90106 19.715 4 0 Median 1.7805 1.7784 NaN 1 0 Median NaN NaN NaN 0 0 Median 541340000 249800000 291540000 196510000 89751000 106760000 124120000 58298000 65825000 140400000 65802000 74597000 73945000 33700000 40245000 6360100 2251500 4108600 0 0 0 14328 907 14912 73230;73231;73232;73233;73234;73235;73236;73237;73238;73239;73240;73241;73242;73243;73244;73245;73246;73247;73248;73249 74269;74270;74271;74272;74273;74274;74275;74276;74277;74278;74279;74280;74281;74282;74283;74284;74285;74286;74287;74288;74289;74290;74291;74292;74293;74294;74295;74296;74297;74298;74299;74300;74301;74302 74279 34 IEDMAVSLIR MTATLLTAGFQTLEKIEDMAVSLIREEWLL QTLEKIEDMAVSLIREEWLLDPSQKDLCRD K I E I R E 1 1 0 1 0 0 1 0 0 2 1 0 1 0 0 1 0 0 0 1 0 0 10 0 1145.6114 Q15776 Q15776 222 231 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 yes yes 2 0.01948 37.344 By matching By matching By MS/MS 1 2 1 0.8939 0.75645 58.19 4 Median 0.57371 0.57478 NaN 1 0 Median 0.8939 0.75645 23.966 2 0 Median 1.9683 2.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12304000 6160100 6143700 2929900 1868500 1061400 5417600 2898400 2519200 3956300 1393200 2563100 0 0 0 0 0 0 0 0 0 14329 2970 14913 73250;73251;73252;73253 74303 74303 1 IEDSGENLETEPLESQDR IPRVPSLSVPWLQDRIEDSGENLETEPLES SGENLETEPLESQDRELLDTSFEDLSKPKR R I E D R E 0 1 1 2 0 1 5 1 0 1 2 0 0 0 1 2 1 0 0 0 0 0 18 0 2059.9182 P78345 P78345 212 229 RPP38 Ribonuclease P protein subunit p38 yes yes 2 1.3837E-06 83.769 By MS/MS 1 0.84748 0.83836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84748 0.83836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4231200 2270200 1960900 0 0 0 0 0 0 4231200 2270200 1960900 0 0 0 0 0 0 0 0 0 14330 2640 14914 73254 74304 74304 1 IEDSTGLNRPGPAPLSSR ASENGLEDIDRILERIEDSTGLNRPGPAPL STGLNRPGPAPLSSRKHVLYVEHRHLNPDT R I E S R K 1 2 1 1 0 0 1 2 0 1 2 0 0 0 3 3 1 0 0 0 0 0 18 1 1865.9595 Q9BQ70;Q9H7D3;H3BSP8;H3BQ53;H3BS87;H3BMJ8;H3BTU3 Q9BQ70 157 174 TCF25 Transcription factor 25 yes no 3 3.9687E-08 88.385 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.53959 0.60214 19.2 5 Median 0.49713 0.49965 7.5332 2 1 Median 0.83011 0.75391 NaN 1 0 Median 0.53959 0.60214 NaN 1 0 Median 0.78719 0.69753 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28387000 16672000 11715000 10228000 6381200 3847000 3436500 1766200 1670400 12276000 7274800 5000700 2446500 1249800 1196800 0 0 0 0 0 0 14331 3786 14915 73255;73256;73257;73258;73259 74305;74306;74307;74308;74309;74310 74307 6 IEDTVFHVFDK PNPQLIYDDEIPSLKIEDTVFHVFDKVKVK PSLKIEDTVFHVFDKVKVKIMLDSSNLQHQ K I E D K V 0 0 0 2 0 0 1 0 1 1 0 1 0 2 0 0 1 0 0 2 0 0 11 0 1348.6663 Q9Y2L1;G3V1J5 Q9Y2L1 896 906 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.023016 52.278 By MS/MS 1 1.0506 1.1594 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0506 1.1594 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456500 1861600 2594900 0 0 0 0 0 0 4456500 1861600 2594900 0 0 0 0 0 0 0 0 0 14332 4384 14916 73260 74311 74311 1 IEDVGSDEEDDSGKDK GEKEEEDKDDEEKPKIEDVGSDEEDDSGKD EDVGSDEEDDSGKDKKKKTKKIKEKYIDQE K I E D K K 0 0 0 5 0 0 3 2 0 1 0 2 0 0 0 2 0 0 0 1 0 0 16 1 1736.7224 P08238;Q58FF8 P08238 250 265 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 3 0.065795 10.281 By MS/MS By matching By matching 1 1 1 0.95306 0.9576 2.41 3 Median 0.92633 0.9576 NaN 1 0 Median 1.0104 0.97679 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95306 0.93104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3835700 1912700 1923000 2353200 1127700 1225500 1309600 693230 616340 0 0 0 172980 91768 81213 0 0 0 0 0 0 14333 1899;3040 14917 73261;73262;73263 74312 74312 1 IEDVGSDEEDDSGKDKK GEKEEEDKDDEEKPKIEDVGSDEEDDSGKD DVGSDEEDDSGKDKKKKTKKIKEKYIDQEE K I E K K K 0 0 0 5 0 0 3 2 0 1 0 3 0 0 0 2 0 0 0 1 0 0 17 2 1864.8174 P08238;Q58FF8 P08238 250 266 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 3;4 0.025261 16.685 By matching By MS/MS 2 2 1.0335 1.0091 10.058 4 Median 0.9387 0.91718 5.8629 2 0 Median 1.1064 1.0795 1.9018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466600 2222100 2244500 2804700 1383100 1421600 1661900 839000 822880 0 0 0 0 0 0 0 0 0 0 0 0 14334 1899;3040 14918 73264;73265;73266;73267 74313;74314;74315 74315 3 IEDVTPIPSDSTR SALRALARSGMKIGRIEDVTPIPSDSTRRK GRIEDVTPIPSDSTRRKGGRRGRRL_____ R I E T R R 0 1 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1428.7096 P62263;A0A2R8Y811 P62263 129 141 RPS14 40S ribosomal protein S14 yes no 2 6.3025E-10 171.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 3 3 0.8502 0.81213 22.932 12 Median 0.5702 0.56107 40.094 2 0 Median 0.84365 0.69793 NaN 1 0 Median 0.81257 0.81871 NaN 1 0 Median 1.0128 0.81828 1.0315 2 0 Median 0.8568 0.90671 10.946 3 2 Median 1.0861 0.83957 20.269 3 0 Plateau 426820000 229340000 197480000 182240000 100640000 81607000 105140000 54636000 50500000 98710000 51482000 47228000 10665000 5155000 5509800 24358000 14724000 9634800 5702800 2702600 3000200 14335 386 14919 73268;73269;73270;73271;73272;73273;73274;73275;73276;73277;73278;73279 74316;74317;74318;74319;74320;74321;74322;74323;74324;74325;74326;74327;74328;74329;74330;74331;74332;74333;74334;74335;74336;74337;74338 74328 23 IEDVTPIPSDSTRR SALRALARSGMKIGRIEDVTPIPSDSTRRK RIEDVTPIPSDSTRRKGGRRGRRL______ R I E R R K 0 2 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 14 1 1584.8107 P62263;A0A2R8Y811 P62263 129 142 RPS14 40S ribosomal protein S14 yes no 2;3 5.4582E-32 206.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 3 1 0.79837 0.79597 14.972 12 Median 0.77206 0.80925 11.266 3 0 Median 0.83002 0.75932 6.0145 2 0 Median 0.82337 0.89417 4.103 2 0 Median 0.78354 0.70159 2.3939 2 0 Median 0.6888 0.77409 36.399 2 2 Median 0.913 0.77285 NaN 1 0 Median 258400000 139870000 118530000 132730000 73642000 59088000 52217000 26759000 25458000 47619000 25100000 22520000 8374400 4807300 3567200 13963000 7552100 6411300 3495000 2006000 1489000 14336 386 14920 73280;73281;73282;73283;73284;73285;73286;73287;73288;73289;73290;73291;73292 74339;74340;74341;74342;74343;74344;74345;74346;74347;74348;74349;74350;74351;74352;74353;74354;74355;74356;74357;74358;74359 74355 21 IEDYFPEFAR KQDLLAEKVLAGKSKIEDYFPEFARYTTPE AGKSKIEDYFPEFARYTTPEDATPEPGEDP K I E A R Y 1 1 0 1 0 0 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 10 0 1285.5979 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A0A0MR13 Q5JWF2 951 960 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 0.065284 57.598 By MS/MS By matching 1 1 0.92348 0.97962 14.614 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0021 1.0863 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85099 0.88345 NaN 1 0 Median NaN NaN NaN 0 0 Median 3803000 1863000 1940000 0 0 0 0 0 0 3247400 1608200 1639300 0 0 0 555520 254760 300760 0 0 0 14337 2616 14921 73293;73294 74360 74360 0 IEEACEIYAR NSQSFFSGLFGGSSKIEEACEIYARAANMF GGSSKIEEACEIYARAANMFKMAKNWSEAI K I E A R A 2 1 0 0 1 0 3 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1252.5758 M0R0Y2;P54920;M0R2M1 M0R0Y2 38 47 NAPA Alpha-soluble NSF attachment protein yes no 2 0.00039083 107.57 By MS/MS 1 1.3136 1.0961 NaN 1 Median NaN NaN NaN 0 0 Median 1.3136 1.0961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4333500 1988700 2344800 0 0 0 4333500 1988700 2344800 0 0 0 0 0 0 0 0 0 0 0 0 14338 1430 14922 73295 74361;74362 74361 2 IEEALMDPGR ERELEKQKAEKELSRIEEALMDPGRQPESA KELSRIEEALMDPGRQPESADDFDRLVLSS R I E G R Q 1 1 0 1 0 0 2 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1129.5438 Q14690;A0A3B3IUD7 Q14690 1591 1600 PDCD11 Protein RRP5 homolog yes no 2 0.0012653 85.731 By MS/MS 1 1.175 1.2888 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.175 1.2888 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7085600 2768500 4317100 0 0 0 0 0 0 7085600 2768500 4317100 0 0 0 0 0 0 0 0 0 14339 448 14923 73296 74363 74363 1 IEEALMDPGRQPESADDFDR ERELEKQKAEKELSRIEEALMDPGRQPESA MDPGRQPESADDFDRLVLSSPNSSILWLQY R I E D R L 2 2 0 4 0 1 3 1 0 1 1 0 1 1 2 1 0 0 0 0 0 0 20 1 2290.0172 Q14690;A0A3B3IUD7 Q14690 1591 1610 PDCD11 Protein RRP5 homolog yes no 3 5.3784E-11 72.21 By MS/MS 1 0.63638 0.8039 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63638 0.8039 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9217700 5555600 3662100 0 0 0 0 0 0 9217700 5555600 3662100 0 0 0 0 0 0 0 0 0 14340 448 14924 73297 74364 74364 1 IEEAMDGSETPQLFTVLPEKR AGMETPELIELRKKKIEEAMDGSETPQLFT GSETPQLFTVLPEKRTATVGGAMMGSTHIY K I E K R T 1 1 0 1 0 1 4 1 0 1 2 1 1 1 2 1 2 0 0 1 0 0 21 1 2389.1835 Q13435;E9PPJ0 Q13435 771 791 SF3B2 Splicing factor 3B subunit 2 yes no 3 2.9305E-12 74.364 By MS/MS By MS/MS 2 2 0.7435 0.83015 20.277 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64029 0.72542 18.071 2 1 Median NaN NaN NaN 0 0 Median 0.83915 0.93622 16.006 2 0 Median NaN NaN NaN 0 0 Median 28020000 15374000 12646000 0 0 0 0 0 0 16485000 9403900 7081100 0 0 0 11535000 5970300 5564900 0 0 0 14341 2817 14925;14926 73298;73299;73300;73301 74365;74366;74367;74368;74369 74368 1510 5 IEEDFPHIR VAEAALQIFKNTGSKIEEDFPHIRSALLPV KNTGSKIEEDFPHIRSALLPVLHHKSKKGP K I E I R S 0 1 0 1 0 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 9 0 1154.572 Q9NTI5 Q9NTI5 699 707 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 2.073E-25 170.32 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14342 4107 14927 73302 74370 74370 1 IEEELGDEAR PCRSERLAKYNQLMRIEEELGDEARFAGHN NQLMRIEEELGDEARFAGHNFRNPSVL___ R I E A R F 1 1 0 1 0 0 4 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1159.5357 P09104;F5H0C8 P09104 413 422 ENO2 Gamma-enolase;Enolase yes no 2 1.2189E-07 138.4 By MS/MS By MS/MS 1 1 1.2724 1.1753 7.0334 2 Median 1.2381 1.2353 NaN 1 1 Median 1.3076 1.1183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5763700 2289400 3474300 2725300 1107000 1618300 3038400 1182300 1856100 0 0 0 0 0 0 0 0 0 0 0 0 14343 1911 14928 73303;73304 74371;74372 74372 2 IEEELGSK PCRSERLAKYNQLLRIEEELGSKAKFAGRN KYNQLLRIEEELGSKAKFAGRNFRNPLAK_ R I E S K A 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 903.45493 P06733;A0A2R8Y6G6 P06733 413 420 ENO1 Alpha-enolase yes no 2 0.0010907 148.04 By MS/MS By MS/MS By MS/MS By MS/MS 7 7 4 4 1.1419 1.0563 33.364 15 Median 1.1782 1.1146 34.447 7 0 Median 1.0739 0.91037 38.878 5 0 Median 1.0249 0.98496 11.12 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 383290000 173330000 209970000 118540000 53786000 64752000 241060000 108060000 133000000 23695000 11482000 12213000 0 0 0 0 0 0 0 0 0 14344 1873 14929 73305;73306;73307;73308;73309;73310;73311;73312;73313;73314;73315;73316;73317;73318;73319;73320;73321;73322;73323;73324;73325;73326 74373;74374;74375;74376;74377;74378;74379;74380;74381;74382;74383;74384;74385;74386;74387;74388;74389;74390;74391;74392;74393;74394;74395;74396 74384 24 IEEEMLALQNER LEQRVSLRRALLEQKIEEEMLALQNERTER EQKIEEEMLALQNERTERIRSLLERQAREI K I E E R T 1 1 1 0 0 1 4 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 12 0 1473.7133 Q7L7X3 Q7L7X3 849 860 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 2 0.00059955 71.016 By MS/MS 1 0.86083 0.73361 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86083 0.73361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1337200 669290 667930 0 0 0 0 0 0 0 0 0 1337200 669290 667930 0 0 0 0 0 0 14345 3227 14930 73327 74397 74397 1 IEEGHIGVYYR ASSFFCASLFSAVHKIEEGHIGVYYRGGAL AVHKIEEGHIGVYYRGGALLTSTSGPGFHL K I E Y R G 0 1 0 0 0 0 2 2 1 2 0 0 0 0 0 0 0 0 2 1 0 0 11 0 1334.6619 O94905;E5RHW4 O94905 26 36 ERLIN2 Erlin-2 yes no 2;3 1.5272E-19 146.69 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 1 1.2481 1.2655 19.779 9 Median 0.93292 0.93371 1.4187 2 1 Median 1.4941 1.2888 2.5772 2 0 Median 1.1075 1.2002 24.462 3 0 Median NaN NaN NaN 0 0 Median 1.2712 1.3202 NaN 1 0 Median 1.6622 1.4628 NaN 1 0 Median 75609000 36593000 39016000 56011000 27862000 28149000 6738600 2510100 4228500 11893000 5750500 6142200 0 0 0 563510 286800 276710 402550 183020 219530 14346 848 14931 73328;73329;73330;73331;73332;73333;73334;73335;73336;73337 74398;74399;74400;74401;74402;74403;74404;74405;74406;74407 74401 10 IEEGIEFVK IITASHDGHVKFWKKIEEGIEFVKHFRSHL VKFWKKIEEGIEFVKHFRSHLGVIESIAVS K I E V K H 0 0 0 0 0 0 3 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 9 0 1062.5597 Q96BP3;F5H7P7;D6R9Q1;D6RD43 Q96BP3 119 127 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0051046 73.26 By MS/MS 1 1.1639 1.2213 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1639 1.2213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5506500 2517100 2989300 0 0 0 0 0 0 5506500 2517100 2989300 0 0 0 0 0 0 0 0 0 14347 3609 14932 73338 74408 74408 1 IEEGLDQINK KTITMLDEQKEQLNRIEEGLDQINKDMRET EQLNRIEEGLDQINKDMRETEKTLTELNKC R I E N K D 0 0 1 1 0 1 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1157.5928 H3BNE1;H3BR18;H3BM38;H3BPJ0;O00161;H3BR99;H3BV99;H3BP15;H3BQY9 H3BNE1 55 64 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 2 0.0075902 47.603 By MS/MS 1 1.0552 0.99952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0552 0.99952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4369700 1918000 2451800 0 0 0 0 0 0 4369700 1918000 2451800 0 0 0 0 0 0 0 0 0 14348 1209 14933 73339 74409 74409 1 IEEGTYGVVYR LQGCRSVEEFQCLNRIEEGTYGVVYRAKDK CLNRIEEGTYGVVYRAKDKKTDEIVALKRL R I E Y R A 0 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 0 2 2 0 0 11 0 1284.635 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 395 405 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 4.3049E-08 135.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0202 0.94797 68.175 4 Median 0.31873 0.30691 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0957 1.1633 NaN 1 1 Median 1.6571 1.4277 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.94987 0.77252 NaN 1 1 Median 30257000 19029000 11229000 15517000 11891000 3626300 0 0 0 10890000 5452900 5437100 1649500 587730 1061700 0 0 0 2200800 1097400 1103400 14349 259 14934 73340;73341;73342;73343 74410;74411;74412;74413 74411 4 IEEIKDFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K I E A R R 1 1 0 1 0 0 2 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 12 1 1446.8082 P63173;J3KT73;J3QL01;J3KSP2 P63173 5 16 RPL38 60S ribosomal protein L38 yes no 2;3 1.4125E-06 123.8 By MS/MS By MS/MS By MS/MS 2 2 2 1.0453 0.98253 14.634 6 Median 0.99743 0.97807 1.6052 2 0 Median 0.98262 0.86755 16.638 2 0 Median 1.111 1.1454 3.8039 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112640000 54752000 57893000 8225300 4019100 4206200 1475100 744000 731060 102940000 49988000 52955000 0 0 0 0 0 0 0 0 0 14350 2622 14935 73344;73345;73346;73347;73348;73349 74414;74415;74416;74417;74418;74419;74420;74421;74422;74423 74421 10 IEELEEALR SSQQLQDSLRKKDDRIEELEEALRESVQIT RKKDDRIEELEEALRESVQITAEREMVLAQ R I E L R E 1 1 0 0 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1100.5714 X6RLX0;Q8IUD2;G8JLD3;K7EPD6;A0A0U1RQN0 X6RLX0 843 851 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00088636 92.439 By MS/MS By matching 1 1 2.8481 2.4698 139.43 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0834 0.92147 NaN 1 0 Median NaN NaN NaN 0 0 Median 7.4875 6.6197 NaN 1 0 Median 4473100 1656600 2816500 0 0 0 0 0 0 0 0 0 3075100 1478600 1596500 0 0 0 1398100 178060 1220000 14351 3311 14936 73350;73351 74424;74425 74425 2 IEELFSIVR CHVQRFFYRIYASLRIEELFSIVRDFPDSR IYASLRIEELFSIVRDFPDSRPAIEDLKYC R I E V R D 0 1 0 0 0 0 2 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1104.6179 Q9UJX6 Q9UJX6 341 349 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2 0.012866 60.59 By MS/MS 1 1.1214 1.2044 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1214 1.2044 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2949500 1453400 1496100 0 0 0 0 0 0 2949500 1453400 1496100 0 0 0 0 0 0 0 0 0 14352 4303 14937 73352 74426 74426 1 IEELGSELK MFQKLPDIREVLTCKIEELGSELKEHYKIE EVLTCKIEELGSELKEHYKIEAFTPLLAPA K I E L K E 0 0 0 0 0 0 3 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1016.539 Q14181;A0A3B3ITS5 Q14181 224 232 POLA2 DNA polymerase alpha subunit B yes no 2 0.02476 52.716 By MS/MS 1 1.0828 0.93153 NaN 1 Median NaN NaN NaN 0 0 Median 1.0828 0.93153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049000 1491600 1557400 0 0 0 3049000 1491600 1557400 0 0 0 0 0 0 0 0 0 0 0 0 14353 2862 14938 73353 74427 74427 1 IEELGSELKEHYK MFQKLPDIREVLTCKIEELGSELKEHYKIE CKIEELGSELKEHYKIEAFTPLLAPAQEPV K I E Y K I 0 0 0 0 0 0 4 1 1 1 2 2 0 0 0 1 0 0 1 0 0 0 13 1 1573.7988 Q14181;A0A3B3ITS5 Q14181 224 236 POLA2 DNA polymerase alpha subunit B yes no 3 8.1373E-05 79.466 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0961 1.0121 51.691 5 Median 1.0742 1.007 NaN 1 0 Median 0.73494 0.69075 73.884 2 0 Median 1.4777 1.6618 NaN 1 1 Median 1.0961 1.0121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24571000 11622000 12949000 13527000 6293500 7233500 4090500 1923700 2166800 5406600 2788900 2617700 1547000 615920 931090 0 0 0 0 0 0 14354 2862 14939 73354;73355;73356;73357;73358 74428;74429;74430;74431;74432;74433 74429 6 IEELQLIVNDK EGKAGSGLRQYYLSKIEELQLIVNDKSQNL YLSKIEELQLIVNDKSQNLRRLQAQRNELN K I E D K S 0 0 1 1 0 1 2 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1312.7238 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QSE0 P62195 28 38 PSMC5 26S protease regulatory subunit 8 yes no 2 0.0007518 63.283 By MS/MS By MS/MS By matching 1 1 1 1.1708 1.0588 10.499 3 Plateau NaN NaN NaN 0 0 Median 1.2356 1.0588 NaN 1 0 Median 1.1094 1.1131 NaN 1 0 Median 1.0201 0.90986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4990200 2353700 2636600 0 0 0 2467200 1073500 1393700 2121700 1040800 1080900 401330 239420 161910 0 0 0 0 0 0 14355 2572 14940 73359;73360;73361 74434;74435;74436 74435 3 IEEMAEQER AALASDFSEDMLQEKIEEMAEQERFLLHQE DMLQEKIEEMAEQERFLLHQETLPEQLLAE K I E E R F 1 1 0 0 0 1 4 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 1133.5023 Q8WUM0 Q8WUM0 992 1000 NUP133 Nuclear pore complex protein Nup133 yes yes 2 2.456E-05 155.1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.2968 1.1078 9.1232 4 Median 1.2935 1.3077 NaN 1 0 Median 1.3191 1.1089 NaN 1 0 Median 0.96946 1.0658 NaN 1 0 Median 1.3002 1.1066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13501000 5964200 7536500 793680 343520 450160 6461200 2918700 3542500 3763300 1654500 2108800 2482600 1047500 1435100 0 0 0 0 0 0 14356 3492 14941 73362;73363;73364;73365;73366;73367 74437;74438;74439;74440;74441;74442;74443;74444 74439 8 IEEMLENAER NPKVTQAIQSFCLEKIEEMLENAERERLGN FCLEKIEEMLENAERERLGNSHQPEKPLVR K I E E R E 1 1 1 0 0 0 4 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1232.5707 P49959;F8W7U8 P49959 340 349 MRE11A Double-strand break repair protein MRE11A yes no 2 5.8577E-06 154.84 By MS/MS By MS/MS By MS/MS 2 2 2 0.94115 0.91601 18.913 6 Median NaN NaN NaN 0 0 Median 0.8743 0.76133 3.1946 2 1 Median 0.94115 0.97355 5.0184 2 1 Median 1.2464 1.0586 24.06 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36792000 17351000 19441000 0 0 0 5727600 3014500 2713100 18828000 9707100 9121000 12236000 4629700 7606500 0 0 0 0 0 0 14357 2407 14942;14943 73368;73369;73370;73371;73372;73373 74445;74446;74447;74448;74449;74450 74448 1121 5 IEENSLKEEESIEGEK PNTPAPVPPAEDGIKIEENSLKEEESIEGE EENSLKEEESIEGEKEVKSTAPETAIECTQ K I E E K E 0 0 1 0 0 0 7 1 0 2 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1861.8793 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1566 1581 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 1.2801E-10 114.69 By matching By MS/MS By MS/MS By matching 1 1 6 1 0.90395 0.9079 36.488 9 Median NaN NaN NaN 0 0 Median 0.83739 0.81388 NaN 1 0 Median 0.81744 0.94702 NaN 1 0 Median 1.023 0.97575 15.127 6 1 Median 0.28444 0.33427 NaN 1 0 Median NaN NaN NaN 0 0 Median 45306000 22706000 22600000 0 0 0 1573000 873710 699260 14456000 7554200 6902100 26619000 12296000 14323000 2658200 1982700 675570 0 0 0 14358 246 14944 73374;73375;73376;73377;73378;73379;73380;73381;73382 74451;74452;74453;74454;74455;74456;74457;74458;74459;74460;74461 74454 11 IEENSLKEEESIEGEKEVK PNTPAPVPPAEDGIKIEENSLKEEESIEGE SLKEEESIEGEKEVKSTAPETAIECTQAPA K I E V K S 0 0 1 0 0 0 8 1 0 2 1 3 0 0 0 2 0 0 0 1 0 0 19 2 2218.0853 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1566 1584 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3;4 1.1362E-18 115.57 By MS/MS By MS/MS 2 2 1.0164 1.1014 12.694 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85418 0.98964 5.714 2 0 Median 1.201 1.2172 4.7302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70387000 36131000 34257000 0 0 0 0 0 0 59457000 30916000 28541000 10930000 5214900 5715400 0 0 0 0 0 0 14359 246 14945 73383;73384;73385;73386 74462;74463;74464;74465;74466;74467 74465 6 IEENVEELRR LKGRLTPYADQLQTKIEENVEELRRSLAPY QLQTKIEENVEELRRSLAPYAQDVQGKLNH K I E R R S 0 2 1 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1285.6626 CON__Q32PJ2 CON__Q32PJ2 212 221 yes yes 3 0.011601 42.743 By MS/MS 1 0.12707 0.11185 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12707 0.11185 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1119700 1010300 109430 0 0 0 0 0 0 0 0 0 1119700 1010300 109430 0 0 0 0 0 0 + 14360 775 14946 73387 74468 74468 1 IEEQFANLHIVK ______________________________ MEKIEEQFANLHIVKCSLGTKEPTYLLGID K I E V K C 1 0 1 0 0 1 2 0 1 2 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1439.7773 G3V4B8;Q96FK6 G3V4B8 4 15 WDR89 WD repeat-containing protein 89 yes no 3 0.0036753 35.677 By MS/MS By matching By matching 1 1 1 0.86193 0.89033 24.988 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86193 0.89033 NaN 1 0 Median 0.71266 0.6067 NaN 1 0 Median 0.98377 0.96997 NaN 1 0 Median NaN NaN NaN 0 0 Median 17939000 9158000 8780500 0 0 0 0 0 0 16693000 8609200 8083800 237350 147500 89848 1008100 401350 606770 0 0 0 14361 1114 14947 73388;73389;73390 74469;74470 74469 2 IEESDQGPYAIILAPTR IPLLVWITTLPKIDRIEESDQGPYAIILAP ESDQGPYAIILAPTRELAQQIEEETIKFGK R I E T R E 2 1 0 1 0 1 2 1 0 3 1 0 0 0 2 1 1 0 1 0 0 0 17 0 1871.9629 Q9BUQ8 Q9BUQ8 462 478 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 2.6456E-12 126.1 By MS/MS By matching 1 1 0.75504 0.71506 10.816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62068 0.66241 NaN 1 0 Median 0.9185 0.77189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5442000 3311800 2130200 0 0 0 0 0 0 5157000 3140400 2016600 285040 171470 113570 0 0 0 0 0 0 14362 3842 14948 73391;73392 74471;74472;74473;74474 74474 4 IEESIDR TDYAIARRIVDLHSRIEESIDRVYSLDDIR RIVDLHSRIEESIDRVYSLDDIRRYLLFAR R I E D R V 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 7 0 860.42396 Q14566 Q14566 559 565 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0045172 105.39 By MS/MS By MS/MS 2 2 1.031 0.98069 4.7439 4 Median 0.98403 0.98069 0.52873 2 0 Median 1.1418 0.9857 8.1838 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12749000 5904500 6844600 2319900 1240700 1079200 10429000 4663800 5765400 0 0 0 0 0 0 0 0 0 0 0 0 14363 2881 14949 73393;73394;73395;73396 74475;74476;74477;74478 74478 4 IEEVPELPLVVEDK AASALPALVMSKGHRIEEVPELPLVVEDKV RIEEVPELPLVVEDKVEGYKKTKEAVLLLK R I E D K V 0 0 0 1 0 0 4 0 0 1 2 1 0 0 2 0 0 0 0 3 0 0 14 0 1607.8658 P36578;H3BM89 P36578 144 157 RPL4 60S ribosomal protein L4 yes no 2 0.00073957 67.022 By MS/MS By MS/MS By MS/MS 1 1 1 0.77523 0.70598 10.5 3 Median 0.75404 0.70598 NaN 1 1 Median 0.77523 0.65515 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90247 0.80609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42965000 23427000 19538000 7435200 4487100 2948100 32572000 17599000 14973000 0 0 0 2958200 1340900 1617300 0 0 0 0 0 0 14364 2260 14950 73397;73398;73399 74479;74480;74481;74482;74483;74484;74485 74485 7 IEEVPELPLVVEDKVEGYK AASALPALVMSKGHRIEEVPELPLVVEDKV PELPLVVEDKVEGYKKTKEAVLLLKKLKAW R I E Y K K 0 0 0 1 0 0 5 1 0 1 2 2 0 0 2 0 0 0 1 4 0 0 19 1 2184.1566 P36578;H3BM89 P36578 144 162 RPL4 60S ribosomal protein L4 yes no 3 3.6069E-08 67.995 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.7922 0.76725 42.164 5 Plateau 0.73868 0.71505 NaN 1 0 Median 0.81828 0.76725 NaN 1 0 Median 0.80914 0.8495 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47005 0.49642 67.645 2 0 Median NaN NaN NaN 0 0 Median 15842000 8102900 7738800 1430800 650630 780160 7261600 3851300 3410400 4818600 2062600 2756000 0 0 0 2330700 1538300 792350 0 0 0 14365 2260 14951 73400;73401;73402;73403;73404 74486;74487;74488;74489;74490 74489 5 IEEVPELPLVVEDKVEGYKK AASALPALVMSKGHRIEEVPELPLVVEDKV ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN R I E K K T 0 0 0 1 0 0 5 1 0 1 2 3 0 0 2 0 0 0 1 4 0 0 20 2 2312.2515 P36578;H3BM89 P36578 144 163 RPL4 60S ribosomal protein L4 yes no 3;4 4.8489E-06 47.397 By MS/MS By MS/MS By MS/MS 1 1 2 0.76782 0.83638 13.066 4 Median 0.68097 0.66237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92384 0.88802 NaN 1 0 Median 0.76782 0.83638 2.694 2 0 Median NaN NaN NaN 0 0 Median 45714000 24156000 21557000 3653900 2325400 1328500 0 0 0 0 0 0 27168000 13715000 13453000 14892000 8116400 6775600 0 0 0 14366 2260 14952 73405;73406;73407;73408 74491;74492;74493;74494;74495 74493 4 IEEVRDAMENEMR LEHHRSEIQAEQDRKIEEVRDAMENEMRTQ RKIEEVRDAMENEMRTQLRRQAAAHTDHLR K I E M R T 1 2 1 1 0 0 4 0 0 1 0 0 2 0 0 0 0 0 0 1 0 0 13 1 1620.7236 Q16891;B9A067;C9J406;H7C463 Q16891 468 480 IMMT MICOS complex subunit MIC60 yes no 3 0.00010997 76.262 By MS/MS 1 0.9386 0.96234 NaN 1 Median 0.9386 0.96234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8054800 3762400 4292500 8054800 3762400 4292500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14367 3001 14953 73409 74496;74497 74497 2 IEEVSDTSSLQPQASLK DLFPTSDTPRAKVLKIEEVSDTSSLQPQAS EVSDTSSLQPQASLKQDVCQSYSEKMPIEI K I E L K Q 1 0 0 1 0 2 2 0 0 1 2 1 0 0 1 4 1 0 0 1 0 0 17 0 1830.9211 Q9H6T3 Q9H6T3 499 515 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 2.1783E-07 94.191 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.87843 0.79343 14.589 4 Median 0.81855 0.7602 NaN 1 0 Median 0.93621 0.82812 NaN 1 0 Median 0.95359 0.99972 NaN 1 0 Median 0.82421 0.71505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15823000 8260300 7562700 6150600 3399000 2751600 2053200 1058500 994760 5587900 2802500 2785400 2031200 1000300 1031000 0 0 0 0 0 0 14368 3978 14954 73410;73411;73412;73413 74498;74499;74500;74501;74502 74498 5 IEEVVER EEIFGPVQPLFKFKKIEEVVERANNTRYGL QPLFKFKKIEEVVERANNTRYGLAAAVFTR K I E E R A 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 7 0 872.46035 P30837 P30837 430 436 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 0.028142 67.032 By MS/MS 1 0.95055 0.94715 NaN 1 Median 0.95055 0.94715 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2036700 1033800 1002900 2036700 1033800 1002900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14369 2199 14955 73414 74503 74503 1 IEEVVLEAR SFYSKEVPQMCIPGKIEEVVLEARTIERNT MCIPGKIEEVVLEARTIERNTKPYRKDENS K I E A R T 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1056.5815 P35573 P35573 772 780 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.00075813 99.802 By MS/MS 1 1.2198 1.0356 NaN 1 Median NaN NaN NaN 0 0 Median 1.2198 1.0356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3192400 1283800 1908600 0 0 0 3192400 1283800 1908600 0 0 0 0 0 0 0 0 0 0 0 0 14370 2243 14956 73415 74504;74505 74505 2 IEEWKQQQLVSGMAER SSSSEEDRESTAQKRIEEWKQQQLVSGMAE EEWKQQQLVSGMAERNANFEALPEDWRARL R I E E R N 1 1 0 0 0 3 3 1 0 1 1 1 1 0 0 1 0 1 0 1 0 0 16 1 1930.9571 Q8N3X1 Q8N3X1 978 993 FNBP4 Formin-binding protein 4 yes yes 3 0.028728 17.281 By MS/MS 1 1.4402 1.6315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4402 1.6315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6496900 2487800 4009100 0 0 0 0 0 0 6496900 2487800 4009100 0 0 0 0 0 0 0 0 0 14371 3370 14957 73416 74506 74506 1 IEFAEQINK EESQRKMNALFEGRRIEFAEQINKMEARPR LFEGRRIEFAEQINKMEARPRRQSMKEKEH R I E N K M 1 0 1 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 9 0 1090.5659 Q9H307 Q9H307 272 280 PNN Pinin yes yes 2 0.033467 35.438 By matching By MS/MS 1 1 1.0172 0.9462 0.34589 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90265 0.94852 NaN 1 0 Median 1.1462 0.94389 NaN 1 0 Median 6660600 3162900 3497700 0 0 0 0 0 0 0 0 0 0 0 0 3788200 1836000 1952200 2872400 1326900 1545500 14372 3950 14958 73417;73418 74507 74507 1 IEFEQNLAANEQAGPINR EDTLAQVRKEYEMLRIEFEQNLAANEQAGP EQNLAANEQAGPINREMRHLISSLQNHNHQ R I E N R E 3 1 3 0 0 2 3 1 0 2 1 0 0 1 1 0 0 0 0 0 0 0 18 0 2012.9916 O75150;H3BP71 O75150 464 481 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2;3 1.1633E-84 204.49 By MS/MS 2 0.83931 0.92294 14.543 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83931 0.92294 14.543 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19896000 11089000 8807500 0 0 0 0 0 0 19896000 11089000 8807500 0 0 0 0 0 0 0 0 0 14373 1648 14959 73419;73420 74508;74509 74508 2 IEFEQTLAANEQAGPINR EDTLAQVRKEYEMLRIEFEQTLAANEQAGP EQTLAANEQAGPINREMRHLISSLQNHNHQ R I E N R E 3 1 2 0 0 2 3 1 0 2 1 0 0 1 1 0 1 0 0 0 0 0 18 0 1999.9963 Q5VTR2 Q5VTR2 457 474 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2;3 9.5913E-13 126.76 By MS/MS By matching 2 1 0.86086 0.89478 3.6813 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83143 0.91445 4.8941 2 0 Median 1.0417 0.89478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14947000 7067100 7879600 0 0 0 0 0 0 14368000 6786600 7581200 578910 280490 298410 0 0 0 0 0 0 14374 3112 14960 73421;73422;73423 74510;74511;74512 74511 3 IEFGVDVTTK EKSWLPQNCTLVDMKIEFGVDVTTKEIVLA LVDMKIEFGVDVTTKEIVLADVIDNDSWRL K I E T K E 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 0 2 0 0 2 0 0 10 0 1107.5812 P22234;E9PBS1;D6RF62 P22234 192 201 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0007841 71.349 By MS/MS By MS/MS By MS/MS 1 1 1 1.1671 1.0606 9.1568 2 Median 1.2235 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1133 0.99412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18738000 8144800 10593000 15929000 7061200 8867700 0 0 0 0 0 0 2809000 1083600 1725400 0 0 0 0 0 0 14375 909 14961 73424;73425;73426 74513;74514;74515;74516 74513 4 IEFISTMEGYK LKKFFNVLTTNTDGKIEFISTMEGYKYPVY TDGKIEFISTMEGYKYPVYGVQWHPEKAPY K I E Y K Y 0 0 0 0 0 0 2 1 0 2 0 1 1 1 0 1 1 0 1 0 0 0 11 0 1316.6322 Q92820 Q92820 225 235 GGH Gamma-glutamyl hydrolase yes yes 2 0.0020633 55.567 By MS/MS 1 0.90587 0.87232 NaN 1 Median 0.90587 0.87232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4416400 2292700 2123700 4416400 2292700 2123700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14376 3560 14962 73427 74517;74518 74518 2 IEFLQSHENQEIYQK NPYCALIEEAYGLDKIEFLQSHENQEIYQK IEFLQSHENQEIYQKAFDLIEHYFGTEDED K I E Q K A 0 0 1 0 0 3 3 0 1 2 1 1 0 1 0 1 0 0 1 0 0 0 15 0 1904.9268 P52294;O60684;O15131 P52294 481 495 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 3 0.00010843 49.988 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1074 0.9577 17.442 6 Median NaN NaN NaN 0 0 Median 1.0527 0.91745 NaN 1 0 Median 0.94274 0.91213 NaN 1 0 Median 1.3028 1.1156 15.514 2 0 Median 1.3474 1.2933 NaN 1 0 Median 1.0161 0.85301 NaN 1 0 Median 34017000 16976000 17041000 0 0 0 1002800 466360 536420 25526000 13001000 12526000 5042100 2259700 2782400 1679100 818100 860990 767100 431640 335460 14377 2449;1626;1524 14963 73428;73429;73430;73431;73432;73433 74519;74520;74521;74522;74523 74520 5 IEFPPPNEEAR ILDSALLRPGRIDRKIEFPPPNEEARLDIL IDRKIEFPPPNEEARLDILKIHSRKMNLTR K I E A R L 1 1 1 0 0 0 3 0 0 1 0 0 0 1 3 0 0 0 0 0 0 0 11 0 1297.6303 P62195 P62195 315 325 PSMC5 26S protease regulatory subunit 8 yes yes 2 0.038681 28.399 By MS/MS By matching 2 1 1.1319 1.0309 15.479 3 Median NaN NaN NaN 0 0 Median 1.0571 0.90948 19.351 2 0 Median NaN NaN NaN 0 0 Median 1.1319 1.0309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6174100 3049400 3124700 0 0 0 5122600 2460200 2662400 0 0 0 1051500 589200 462270 0 0 0 0 0 0 14378 2572 14964 73434;73435;73436 74524 74524 1 IEFTFER AGIPSITAYSKNGLKIEFTFERSNTNPSVT AYSKNGLKIEFTFERSNTNPSVTVITIQAS K I E E R S 0 1 0 0 0 0 2 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 7 0 940.46543 O43747;B3KNW1 O43747 717 723 AP1G1 AP-1 complex subunit gamma-1 yes no 2 0.015644 70.912 By MS/MS By MS/MS 1 1 1.1536 1.1716 23.216 2 Median 1.0311 0.99425 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2907 1.3807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363400 2764100 3599300 4027100 1876400 2150700 0 0 0 2336300 887720 1448600 0 0 0 0 0 0 0 0 0 14379 1587 14965 73437;73438 74525;74526;74527 74525 3 IEFVGQIELFNDK AFKQPGKRLEHQGIRIEFVGQIELFNDKSN IRIEFVGQIELFNDKSNTHEFVNLVKELAL R I E D K S 0 0 1 1 0 1 2 1 0 2 1 1 0 2 0 0 0 0 0 1 0 0 13 0 1550.7981 O75436;S4R3Q6 O75436 70 82 VPS26A Vacuolar protein sorting-associated protein 26A yes no 2 0.0009775 61.353 By MS/MS 1 1.0858 0.92568 NaN 1 Median NaN NaN NaN 0 0 Median 1.0858 0.92568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1013500 464070 549430 0 0 0 1013500 464070 549430 0 0 0 0 0 0 0 0 0 0 0 0 14380 1671 14966 73439 74528 74528 1 IEGDETSTEAATR RADQFEYVMYGKVYRIEGDETSTEAATRLS YRIEGDETSTEAATRLSAYVSYGGLLMRLQ R I E T R L 2 1 0 1 0 0 3 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 13 0 1378.6212 C9JLU1;P52434 C9JLU1 99 111 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2 5.735E-07 106.29 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0882 1.0136 12.478 4 Median 1.104 1.1031 NaN 1 0 Median 1.0203 0.84685 NaN 1 0 Median 1.0727 1.0859 NaN 1 0 Median 1.1514 0.94602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7550300 3421000 4129300 1767700 816750 950970 2325100 1066800 1258300 3016200 1380600 1635600 441320 156840 284480 0 0 0 0 0 0 14381 707 14967 73440;73441;73442;73443 74529;74530;74531;74532;74533;74534;74535 74533 7 IEGDPQGVQQAK SVRIPPDSEKSNLIRIEGDPQGVQQAKREL LIRIEGDPQGVQQAKRELLELASRMENERT R I E A K R 1 0 0 1 0 3 1 2 0 1 0 1 0 0 1 0 0 0 0 1 0 0 12 0 1268.6361 Q00341;A0A024R4E5;H0Y394 Q00341 483 494 HDLBP Vigilin yes no 2 4.6895E-06 118.18 By matching By MS/MS 1 1 0.94834 0.85755 5.2396 2 Median 0.93254 0.88992 NaN 1 0 Median 0.9644 0.82636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5277800 2400300 2877500 705270 326260 379010 4572500 2074000 2498500 0 0 0 0 0 0 0 0 0 0 0 0 14382 4 14968 73444;73445 74536;74537 74536 2 IEGEGGIER I E E R 0 1 0 0 0 0 3 3 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 958.47197 REV__O43166 yes yes 2 0.0014144 81.784 By MS/MS 1 1.0645 1.0791 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0645 1.0791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17924000 7974300 9949300 0 0 0 0 0 0 17924000 7974300 9949300 0 0 0 0 0 0 0 0 0 + 14383 4533 14969 73446 74538 74538 1 IEGEKHDMVR LHFKYLGAMQVADKKIEGEKHDMVRRGEII VADKKIEGEKHDMVRRGEIIDNDTEEEFYL K I E V R R 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 10 1 1212.5921 Q8WYA6;A0A087WUB9 Q8WYA6 459 468 CTNNBL1 Beta-catenin-like protein 1 yes no 3 0.048737 28.204 By matching By MS/MS By MS/MS 1 1 1 1.1189 1.139 4.4631 3 Median 1.1189 1.139 NaN 1 0 Median 1.2404 1.1508 NaN 1 1 Median 0.99721 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2547700 1155100 1392600 303850 134400 169450 533160 244140 289010 1710700 776550 934150 0 0 0 0 0 0 0 0 0 14384 28 14970 73447;73448;73449 74539;74540 74540 2 IEGEMQVPDVDIR KGPKMKGNVDISAPKIEGEMQVPDVDIRGP PKIEGEMQVPDVDIRGPKVDIKAPDVEGQG K I E I R G 0 1 0 2 0 1 2 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 13 0 1499.729 Q09666 Q09666 1092 1104 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.404E-18 134.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 5 1 0.9545 0.86061 16.303 15 Median 0.93306 0.9039 12.857 3 1 Plateau 0.97829 0.82549 22.224 3 0 Median 1.0105 1.0595 2.4732 3 0 Median 0.9545 0.83129 5.2172 5 0 Median 1.0006 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median 116750000 59145000 57603000 55945000 29636000 26309000 7576500 3349100 4227500 39691000 19647000 20044000 11020000 5351300 5668900 2514800 1161500 1353200 0 0 0 14385 2749 14971;14972 73450;73451;73452;73453;73454;73455;73456;73457;73458;73459;73460;73461;73462;73463;73464;73465 74541;74542;74543;74544;74545;74546;74547;74548;74549;74550;74551;74552;74553;74554;74555;74556;74557;74558 74551 1441 18 IEGEMQVPDVDIRGPK KGPKMKGNVDISAPKIEGEMQVPDVDIRGP EGEMQVPDVDIRGPKVDIKAPDVEGQGLDW K I E P K V 0 1 0 2 0 1 2 2 0 2 0 1 1 0 2 0 0 0 0 2 0 0 16 1 1781.8982 Q09666 Q09666 1092 1107 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 4.2191E-05 52.254 By MS/MS By MS/MS 3 1 0.74933 0.77152 21.961 4 Median 0.70481 0.73772 7.5782 3 1 Median NaN NaN NaN 0 0 Median 0.97902 1.1351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42692000 24054000 18638000 31654000 18527000 13127000 0 0 0 11039000 5527100 5511500 0 0 0 0 0 0 0 0 0 14386 2749 14973;14974 73466;73467;73468;73469 74559;74560;74561;74562 74559 1441 4 IEGLQNLVNLR TNLTVLSMQSNRLTKIEGLQNLVNLRELYL RLTKIEGLQNLVNLRELYLSHNGIEVIEGL K I E L R E 0 1 2 0 0 1 1 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1267.7248 H7C003;Q15435;C9J177;C9JD73;B5MBZ8 H7C003 220 230 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.00013475 112.84 By MS/MS By MS/MS By matching 1 2 1 0.77512 0.71585 40.909 4 Median 0.54724 0.54574 NaN 1 1 Median 1.2467 1.0699 33.426 2 0 Median 0.60176 0.60666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58952000 29735000 29217000 12893000 8797500 4095700 43328000 19361000 23967000 2731300 1577400 1153900 0 0 0 0 0 0 0 0 0 14387 1254 14975 73470;73471;73472;73473 74563;74564;74565;74566 74565 4 IEGSGDQVDTLELSGGAR LLQMVQQFGVDFEKRIEGSGDQVDTLELSG SGDQVDTLELSGGARINRIFHERFPFELVK R I E A R I 1 1 0 2 0 1 2 4 0 1 2 0 0 0 0 2 1 0 0 1 0 0 18 0 1802.8646 P50570 P50570 344 361 DNM2 Dynamin-2 no no 2 5.4041E-19 172.57 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 2 1 0.9851 0.89801 14.132 7 Median 0.99743 0.96424 NaN 1 0 Median 1.0991 0.98291 12.775 2 0 Median 0.92897 0.98274 NaN 1 0 Median 0.87395 0.74599 6.9752 2 0 Median NaN NaN NaN 0 0 Median 1.0687 0.87284 NaN 1 0 Median 39675000 20119000 19556000 5930700 3048600 2882100 822000 428810 393190 26522000 13530000 12991000 5524400 2706200 2818200 0 0 0 876640 405350 471300 14388 2417 14976 73474;73475;73476;73477;73478;73479;73480 74567;74568;74569;74570;74571 74570 5 IEGSNKVPVDPATYGQFYGGDSYIILYNYR HGMDDDGTGQKQIWRIEGSNKVPVDPATYG QFYGGDSYIILYNYRHGGRQGQIIYNWQGA R I E Y R H 1 1 2 2 0 1 1 4 0 3 1 1 0 1 2 2 1 0 5 2 0 0 30 1 3398.6459 A0A0A0MS51;A0A0A0MT01;P06396 A0A0A0MS51 418 447 GSN Gelsolin yes no 3 0.063979 15.519 By MS/MS 1 0.62395 0.63378 NaN 1 Median 0.62395 0.63378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 613610 392820 220790 613610 392820 220790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 14389 176 14977 73481 74572 74572 1 IEGTPLETIQK HGHHKMELPDYRQWKIEGTPLETIQKKLAA RQWKIEGTPLETIQKKLAAKGLRDPWGRNE K I E Q K K 0 0 0 0 0 1 2 1 0 2 1 1 0 0 1 0 2 0 0 0 0 0 11 0 1227.6711 O43676;C9JKQ2 O43676 24 34 NDUFB3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 yes no 2 0.00011898 135.63 By MS/MS By MS/MS 1 1 1.1038 0.95345 30.247 2 Median 0.8474 0.76986 NaN 1 0 Median 1.4379 1.1808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47715000 21231000 26484000 14619000 7719600 6899500 33096000 13512000 19584000 0 0 0 0 0 0 0 0 0 0 0 0 14390 1583 14978 73482;73483 74573;74574;74575;74576;74577;74578 74577 6 IEGTPLETIQKK HGHHKMELPDYRQWKIEGTPLETIQKKLAA QWKIEGTPLETIQKKLAAKGLRDPWGRNEA K I E K K L 0 0 0 0 0 1 2 1 0 2 1 2 0 0 1 0 2 0 0 0 0 0 12 1 1355.766 O43676;C9JKQ2 O43676 24 35 NDUFB3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 yes no 3 0.00014716 67.456 By MS/MS By MS/MS 1 1 1.7086 1.5395 71.263 2 Median 0.9932 0.9301 NaN 1 0 Median 2.9393 2.5481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33867000 10014000 23853000 6444600 3078600 3365900 27422000 6935600 20487000 0 0 0 0 0 0 0 0 0 0 0 0 14391 1583 14979 73484;73485 74579;74580;74581 74580 3 IEGVLLLGEPVR RRLKTTPLPRNDFPRIEGVLLLGEPVRWET FPRIEGVLLLGEPVRWETSLQLIMDVLLSN R I E V R W 0 1 0 0 0 0 2 2 0 1 3 0 0 0 1 0 0 0 0 2 0 0 12 0 1293.7656 Q9BXW7;A8MYZ9 Q9BXW7 189 200 CECR5 Cat eye syndrome critical region protein 5 yes no 2 0.00063696 85.377 By MS/MS By MS/MS 1 1 1.7467 1.6348 64.123 2 Median 2.5607 2.5727 NaN 1 0 Median 1.1914 1.0389 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9071000 4673300 4397700 2324600 725210 1599400 6746400 3948100 2798300 0 0 0 0 0 0 0 0 0 0 0 0 14392 3882 14980 73486;73487 74582;74583 74582 2 IEGVYAR KRGLRNQREHTALLKIEGVYARDETEFYLG REHTALLKIEGVYARDETEFYLGKRCAYVY K I E A R D 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 806.42865 P18077;F8WBS5;F8WB72;C9K025 P18077 30 36 RPL35A 60S ribosomal protein L35a yes no 2 0.0021589 127.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 2 1 1.2442 1.1929 11.785 8 Median 1.2247 1.2092 5.2537 2 0 Median 1.16 0.99009 NaN 1 0 Median 1.2401 1.2574 NaN 1 0 Median 1.3811 1.0861 NaN 1 0 Median 1.2838 1.3309 12.133 2 0 Median 1.3865 1.0797 NaN 1 0 Median 80210000 36909000 43301000 26056000 11889000 14167000 38803000 18559000 20245000 7616800 3278100 4338700 3735600 1469300 2266400 3602300 1555100 2047200 395880 159030 236860 14393 2054 14981 73488;73489;73490;73491;73492;73493;73494;73495 74584;74585;74586;74587;74588;74589;74590 74587 7 IEGYEDQVLITEHGDLGNGK HAFAQYNLDQFTPVKIEGYEDQVLITEHGD DQVLITEHGDLGNGKFLDPKNRICFKFDHL K I E G K F 0 0 1 2 0 1 3 4 1 2 2 1 0 0 0 0 1 0 1 1 0 0 20 0 2186.0491 P47755;C9JUG7;F8W9N7;A0A0D9SET8 P47755 67 86 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 3 0.00011198 36.856 By MS/MS 1 0.94701 0.90854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94701 0.90854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5770700 2818000 2952700 0 0 0 0 0 0 5770700 2818000 2952700 0 0 0 0 0 0 0 0 0 14394 2354 14982 73496 74591 74591 1 IEGYEDQVLITEHGDLGNSR HAFAQYNMDQFTPVKIEGYEDQVLITEHGD DQVLITEHGDLGNSRFLDPRNKISFKFDHL K I E S R F 0 1 1 2 0 1 3 3 1 2 2 0 0 0 0 1 1 0 1 1 0 0 20 0 2244.0659 P52907 P52907 67 86 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 3.8042E-14 102.37 By MS/MS 1 1.058 1.0281 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.058 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24973000 11951000 13022000 0 0 0 0 0 0 24973000 11951000 13022000 0 0 0 0 0 0 0 0 0 14395 2461 14983 73497 74592;74593 74593 2 IEHSFWR DMQNRLNKVIKSVGKIEHSFWRSFHTERKT KVIKSVGKIEHSFWRSFHTERKTEPATGFI K I E W R S 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 7 0 973.477 Q16531 Q16531 1068 1074 DDB1 DNA damage-binding protein 1 yes yes 2 0.0072078 95.62 By MS/MS By MS/MS 1 2 1.2147 1.0077 28.224 3 Median NaN NaN NaN 0 0 Median 1.2147 1.0077 NaN 1 1 Median 1.1233 1.2352 36.289 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32112000 14375000 17737000 0 0 0 23675000 10740000 12935000 8437300 3635200 4802100 0 0 0 0 0 0 0 0 0 14396 2985 14984 73498;73499;73500 74594;74595;74596 74595 3 IEIDPQFQVVR IQEVTINQNLLTPLKIEIDPQFQVVRTQET TPLKIEIDPQFQVVRTQETQEIRTLNNQFA K I E V R T 0 1 0 1 0 2 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 11 0 1342.7245 CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4 CON__Q7RTT2 98 108 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.0043002 69.812 By MS/MS 1 0.37995 0.42221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37995 0.42221 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2270500 1767500 502980 0 0 0 0 0 0 2270500 1767500 502980 0 0 0 0 0 0 0 0 0 + 14397 788 14985 73501 74597 74597 1 IEIEMLGLSK SEMEQFKPKDSALLRIEIEMLGLSKRLQES SALLRIEIEMLGLSKRLQESHDEMKSVAKE R I E S K R 0 0 0 0 0 0 2 1 0 2 2 1 1 0 0 1 0 0 0 0 0 0 10 0 1131.6209 Q02224;A0A087X0P0 Q02224 1419 1428 CENPE Centromere-associated protein E;Kinesin-like protein yes no 2 0.014267 38.962 By MS/MS 1 0.89396 0.8672 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89396 0.8672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15835000 7954000 7881200 0 0 0 0 0 0 15835000 7954000 7881200 0 0 0 0 0 0 0 0 0 14398 107 14986 73502 74598;74599 74598 2 IEIESFYEGEDFSETLTR VEKAKRALSSQHQARIEIESFYEGEDFSET ESFYEGEDFSETLTRAKFEELNMDLFRSTM R I E T R A 0 1 0 1 0 0 5 1 0 2 1 0 0 2 0 2 2 0 1 0 0 0 18 0 2163.9848 P11021 P11021 307 324 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.0011055 36.847 By MS/MS By MS/MS 2 1 1.112 1.0765 3.3541 3 Median 1.0632 1.065 4.6624 2 0 Median 1.2411 1.0765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881200 1858600 2022600 2871400 1414300 1457100 1009800 444290 565470 0 0 0 0 0 0 0 0 0 0 0 0 14399 1948 14987 73503;73504;73505 74600;74601;74602;74603 74603 4 IEILAPPNGSVPGDR VLSQAMVMCASSPEKIEILAPPNGSVPGDR IEILAPPNGSVPGDRITFDAFPGEPDKELN K I E D R I 1 1 1 1 0 0 1 2 0 2 1 0 0 0 3 1 0 0 0 1 0 0 15 0 1533.8151 Q12904 Q12904 236 250 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 2 2.6119E-07 93.258 By MS/MS 2 0.76332 0.75696 4.6663 2 Median 0.76332 0.75696 4.6663 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12701000 6906000 5795000 12701000 6906000 5795000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14400 2768 14988 73506;73507 74604;74605 74605 2 IEINFPAEYPFKPPK LIVPDNPPYDKGAFRIEINFPAEYPFKPPK IEINFPAEYPFKPPKITFKTKIYHPNIDEK R I E P K I 1 0 1 0 0 0 2 0 0 2 0 2 0 2 4 0 0 0 1 0 0 0 15 1 1788.9451 P68036 P68036 53 67 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes yes 3 0.00012178 62.377 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.62128 0.59141 45.733 4 Median 0.57119 0.56975 NaN 1 0 Median 0.63995 0.56574 NaN 1 0 Median 0.60317 0.6139 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2396 1.4501 NaN 1 0 Median NaN NaN NaN 0 0 Median 21016000 12151000 8865800 14261000 8548100 5713200 1323300 771540 551710 4908300 2551800 2356600 0 0 0 523510 279180 244320 0 0 0 14401 2631 14989 73508;73509;73510;73511 74606;74607;74608;74609;74610;74611 74608 6 IEISELNR QITAGRHGDSVRNSKIEISELNRVIQRLRS DSVRNSKIEISELNRVIQRLRSEIDNVKKQ K I E N R V 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 972.52401 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908 P04264 396 403 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 2 4.369E-60 204.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 7 9 12 6 5 0.015728 0.014276 131.75 47 Median 0.024964 0.023417 160.51 9 9 Median 0.021547 0.018655 82.239 7 7 Median 0.021924 0.02218 89.175 9 9 Median 0.0085584 0.0072454 130.04 11 11 Median 0.012699 0.012586 71.662 6 6 Median 0.011728 0.009421 135.31 5 5 Median 4136500000 4035900000 100560000 751050000 716770000 34279000 769080000 743200000 25881000 557880000 543580000 14302000 1016500000 1002600000 13921000 488000000 479970000 8032600 553990000 549850000 4148000 + 14402 1848;764;765 14990 73512;73513;73514;73515;73516;73517;73518;73519;73520;73521;73522;73523;73524;73525;73526;73527;73528;73529;73530;73531;73532;73533;73534;73535;73536;73537;73538;73539;73540;73541;73542;73543;73544;73545;73546;73547;73548;73549;73550;73551;73552;73553;73554;73555;73556;73557;73558;73559;73560;73561 74612;74613;74614;74615;74616;74617;74618;74619;74620;74621;74622;74623;74624;74625;74626;74627;74628;74629;74630;74631;74632;74633;74634;74635;74636;74637;74638;74639;74640;74641;74642;74643;74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655;74656;74657;74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668;74669;74670;74671;74672;74673;74674;74675 74670 64 IEISELNRVIQR QITAGRHGDSVRNSKIEISELNRVIQRLRS NSKIEISELNRVIQRLRSEIDNVKKQISNL K I E Q R L 0 2 1 0 0 1 2 0 0 3 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1468.8362 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908 P04264 396 407 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 3 0.00056455 76.655 By MS/MS 1 0.1658 0.18018 NaN 1 Median 0.1658 0.18018 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3522100 3150900 371190 3522100 3150900 371190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 14403 1848;764;765 14991 73562 74676 74676 1 IEISTIASNYHLEVNPSDAGNSDR LRIEHQTITTPSKKKIEISTIASNYHLEVN YHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ K I E D R V 2 1 3 2 0 0 2 1 1 3 1 0 0 0 1 4 1 0 1 1 0 0 24 0 2601.2307 P40938 P40938 82 105 RFC3 Replication factor C subunit 3 yes yes 3 2.7472E-16 66.383 By MS/MS By matching 1 1 1.0216 0.9788 17.139 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79862 0.86708 NaN 1 0 Median 1.3068 1.1049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7354400 3996000 3358500 0 0 0 0 0 0 7012500 3824400 3188100 341920 171550 170370 0 0 0 0 0 0 14404 2294 14992 73563;73564 74677;74678 74677 2 IEITSLLPSR SVISSWLSTDPAKDRIEITSLLPSRSLSVN PAKDRIEITSLLPSRSLSVNTLDVLGPCLV R I E S R S 0 1 0 0 0 0 1 0 0 2 2 0 0 0 1 2 1 0 0 0 0 0 10 0 1127.655 Q8NFH3 Q8NFH3 340 349 NUP43 Nucleoporin Nup43 yes yes 2 0.00033784 122.13 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0415 0.99149 5.2625 4 Median 0.94298 0.93644 NaN 1 0 Median 1.2282 1.0641 NaN 1 0 Median 0.91306 0.99849 NaN 1 0 Median 1.1503 0.98454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34820000 16937000 17882000 4548000 2237500 2310500 3849600 1614000 2235600 21857000 11044000 10814000 4565100 2042300 2522800 0 0 0 0 0 0 14405 3435 14993 73565;73566;73567;73568 74679;74680;74681;74682;74683;74684;74685;74686;74687;74688;74689 74684 11 IEIVVVGTGDR ITEDSFSLFWLLEPRIEIVVVGTGDRTERL LEPRIEIVVVGTGDRTERLQSQVLQAMRQR R I E D R T 0 1 0 1 0 0 1 2 0 2 0 0 0 0 0 0 1 0 0 3 0 0 11 0 1156.6452 Q9BU61 Q9BU61 112 122 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 yes yes 2 0.024779 53.756 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14406 3834 14994 73569 74690 74690 1 IEKFHSQLMR VCLVYKTDQAQDVKKIEKFHSQLMRLMVAK QDVKKIEKFHSQLMRLMVAKEARNVTMETE K I E M R L 0 1 0 0 0 1 1 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 10 1 1287.6758 P49458 P49458 62 71 SRP9 Signal recognition particle 9 kDa protein yes yes 3 0.00396 41.399 By MS/MS 1 1.1345 1.1125 NaN 1 Median 1.1345 1.1125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2596100 1062200 1533900 2596100 1062200 1533900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14407 2384 14995 73570 74691;74692 74692 2 IEKLEEYITTSK KIKQKLREIEENQKRIEKLEEYITTSKQSL QKRIEKLEEYITTSKQSLEEQKKLEGELTE R I E S K Q 0 0 0 0 0 0 3 0 0 2 1 2 0 0 0 1 2 0 1 0 0 0 12 1 1452.7712 Q14683;G8JLG1 Q14683 435 446 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 1.0321E-06 150.09 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 3 5 1.0738 1.0004 21.233 17 Median 1.1501 1.1221 7.57 2 0 Median 1.0283 0.96634 22.844 2 0 Median 0.82976 0.97038 4.3127 2 0 Median 0.97552 0.92925 31.829 3 1 Median 0.94875 1.0346 12.142 3 0 Median 1.1196 0.99789 30.78 5 0 Median 172630000 87460000 85168000 14713000 6358200 8355000 2267900 1103600 1164400 68950000 37422000 31528000 5495200 2636000 2859200 74291000 36587000 37704000 6911300 3353900 3557300 14408 2889 14996 73571;73572;73573;73574;73575;73576;73577;73578;73579;73580;73581;73582;73583;73584;73585;73586;73587 74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703;74704;74705;74706;74707 74699 15 IEKTDNVEVTDGENKEIK TVKEIPFLNEQTNSKIEKTDNVEVTDGENK TDNVEVTDGENKEIKVKVDNISESTDKSAE K I E I K V 0 0 2 2 0 0 4 1 0 2 0 3 0 0 0 0 2 0 0 2 0 0 18 2 2060.0273 Q92576;E7ER40 Q92576 1507 1524 PHF3 PHD finger protein 3 yes no 4 0.06852 17.296 By MS/MS 1 0.58977 0.6833 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58977 0.6833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2352900 1367500 985460 0 0 0 0 0 0 2352900 1367500 985460 0 0 0 0 0 0 0 0 0 14409 3539 14997 73588 74708 74708 1 IELATENHNYR I E Y R 1 1 2 0 0 0 2 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 11 0 1358.6579 REV__Q9HAR2 yes no 2 0.0044917 47.869 By matching By MS/MS 1 1 0.3788 0.39676 83.24 2 Median 0.20829 0.22024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68891 0.71474 NaN 1 0 Median NaN NaN NaN 0 0 Median 9050300 5544100 3506200 2161800 1600800 560930 0 0 0 0 0 0 0 0 0 6888500 3943200 2945300 0 0 0 + 14410 4517 14998 73589;73590 74709 74709 1 IELGDVTPHNIK ______________________________ GSRIELGDVTPHNIKQLKRLNQVIFPVSYN R I E I K Q 0 0 1 1 0 0 1 1 1 2 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1334.7194 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;C9J5J3;A0A0D9SF32;C9JZU6;F8WCK0 C9J5D1 6 17 NAA50 N-alpha-acetyltransferase 50 yes no 2;3 4.0931E-06 125.56 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.0671 0.9514 9.0727 8 Median 1.0732 1.0098 4.5039 2 0 Median 1.0691 0.91577 1.4761 2 0 Median 1.087 1.0192 1.5232 2 0 Median 1.0031 0.83149 1.8284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110420000 52820000 57598000 57626000 28088000 29538000 18013000 8946300 9066800 23617000 10594000 13024000 11162000 5192000 5969800 0 0 0 0 0 0 14411 677 14999 73591;73592;73593;73594;73595;73596;73597;73598 74710;74711;74712;74713;74714;74715;74716;74717;74718;74719;74720;74721;74722;74723;74724;74725;74726 74713 17 IELHGKPIEVEHSVPK DESWALKAIEALSGKIELHGKPIEVEHSVP ELHGKPIEVEHSVPKRQRIRKLQIRNIPPH K I E P K R 0 0 0 0 0 0 3 1 2 2 1 2 0 0 2 1 0 0 0 2 0 0 16 1 1810.9941 O00425;F8WD15 O00425 61 76 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 3;4 4.1115E-05 65.225 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 2 0.87311 0.78346 23.857 8 Median 0.57543 0.5375 1.0485 2 0 Median 0.88578 0.82836 NaN 1 0 Median 0.55299 0.61982 NaN 1 0 Median 0.91388 0.84383 NaN 1 0 Median 0.94418 1.0572 NaN 1 1 Median 0.87311 0.78346 0.10572 2 0 Median 75147000 44505000 30642000 43609000 27152000 16457000 5950500 2930300 3020200 7104500 4220000 2884500 3678100 1619600 2058500 10246000 6251500 3994000 4558600 2331200 2227300 14412 1462 15000 73599;73600;73601;73602;73603;73604;73605;73606 74727;74728;74729;74730;74731;74732;74733;74734;74735;74736 74729 9 IELHGKPIEVEHSVPKR DESWALKAIEALSGKIELHGKPIEVEHSVP LHGKPIEVEHSVPKRQRIRKLQIRNIPPHL K I E K R Q 0 1 0 0 0 0 3 1 2 2 1 2 0 0 2 1 0 0 0 2 0 0 17 2 1967.0952 O00425;F8WD15 O00425 61 77 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 4 0.0020349 27.149 By MS/MS 1 0.70254 0.76054 NaN 1 Median 0.70254 0.76054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2666200 1493400 1172800 2666200 1493400 1172800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14413 1462 15001 73607 74737 74737 1 IELLGSYDPQK DLNRKSNQVKTCKAKIELLGSYDPQKQLII CKAKIELLGSYDPQKQLIIEDPYYGNDSDF K I E Q K Q 0 0 0 1 0 1 1 1 0 1 2 1 0 0 1 1 0 0 1 0 0 0 11 0 1261.6554 P24666 P24666 114 124 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes yes 2 0.00013373 96.89 By MS/MS By MS/MS By matching By matching By matching 1 3 3 1 1 1.1015 1.0236 19.375 9 Median 1.0112 0.94869 NaN 1 0 Median 1.2081 1.0236 27.104 3 0 Median 1.0337 1.0652 12.905 3 0 Median 1.2519 1.0842 NaN 1 0 Median 0.74264 0.78581 NaN 1 0 Median NaN NaN NaN 0 0 Median 90790000 44210000 46580000 63099000 31081000 32018000 8407400 3642200 4765200 16302000 7989300 8312700 756090 252930 503160 2225700 1244800 980880 0 0 0 14414 2125 15002 73608;73609;73610;73611;73612;73613;73614;73615;73616 74738;74739;74740;74741 74739 4 IELPELFDR ARGLFKDFFPETGTKIELPELFDRGTASFP PETGTKIELPELFDRGTASFPQTIYCGFDP K I E D R G 0 1 0 1 0 0 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 9 0 1130.5972 Q9Y2Z4;H0YHS6 Q9Y2Z4 59 67 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2 0.0078737 50.607 By matching By MS/MS By matching By matching 2 2 1 1 1.1131 0.96138 34.17 6 Median NaN NaN NaN 0 0 Median 1.1578 0.98948 2.2443 2 0 Median 0.79491 0.79658 24.763 2 0 Median 1.0844 0.94224 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.181 1.9071 NaN 1 0 Median 21454000 10145000 11309000 0 0 0 4373400 1929700 2443700 12771000 6376700 6394100 3934600 1736900 2197700 0 0 0 375260 102190 273070 14415 4399 15003 73617;73618;73619;73620;73621;73622 74742;74743 74743 2 IELVVAPAGVTLK EKDHTTLLSEVMTPRIELVVAPAGVTLKEA PRIELVVAPAGVTLKEANEILQRSKKGKLP R I E L K E 2 0 0 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 3 0 0 13 0 1308.8017 A0A3B3IRL5;C9J381;P20839;C9K0R9 A0A3B3IRL5 146 158 IMPDH1 Inosine-5-monophosphate dehydrogenase;Inosine-5-monophosphate dehydrogenase 1 yes no 2 0.00010955 84.658 By MS/MS 2 0.87748 0.76046 4.8617 2 Median NaN NaN NaN 0 0 Median 0.87748 0.76046 4.8617 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40236000 21287000 18949000 0 0 0 40236000 21287000 18949000 0 0 0 0 0 0 0 0 0 0 0 0 14416 413 15004 73623;73624 74744;74745 74745 2 IELWEQEHSK LQKMLPKLEEELKARIELWEQEHSKAFMVN ELKARIELWEQEHSKAFMVNGQKFMEYVAE R I E S K A 0 0 0 0 0 1 3 0 1 1 1 1 0 0 0 1 0 1 0 0 0 0 10 0 1297.6303 O43663;H0YL53;G3V3N7 O43663 410 419 PRC1 Protein regulator of cytokinesis 1 yes no 2;3 0.0020672 47.559 By matching By matching By MS/MS 1 1 2 1.005 0.96363 26.309 4 Median 1.0069 0.97407 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93152 0.95329 NaN 1 0 Median 1.3451 1.1509 41.939 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15988000 7261900 8726600 1699100 742270 956830 0 0 0 9020000 4493400 4526600 5269300 2026100 3243200 0 0 0 0 0 0 14417 1581 15005 73625;73626;73627;73628 74746;74747;74748 74746 3 IEMCFHHVPK I E P K 0 0 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 0 0 1 0 0 10 0 1296.6107 REV__Q8IYM2 yes yes 2 0.016571 44.447 By matching By MS/MS 1 2 1.1881 1.0386 20.08 3 Median 1.522 1.4706 NaN 1 0 Median 1.1881 1.0386 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13951000 5669300 8281900 3248900 1107300 2141600 10702000 4562100 6140300 0 0 0 0 0 0 0 0 0 0 0 0 + 14418 4550 15006 73629;73630;73631 74749 74749 2010 1 IENDVATILSR RKVEEQREQEAKHERIENDVATILSRRIAV KHERIENDVATILSRRIAVEYSDSEDDSEF R I E S R R 1 1 1 1 0 0 1 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1229.6616 Q92558 Q92558 527 537 WASF1 Wiskott-Aldrich syndrome protein family member 1 yes yes 2 0.00013505 95.573 By MS/MS By MS/MS By matching 1 1 1 1.2091 0.97095 20.185 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2091 1.2687 NaN 1 0 Median 1.018 0.85421 NaN 1 0 Median 0.92785 0.97095 NaN 1 0 Median NaN NaN NaN 0 0 Median 6073900 2837200 3236700 0 0 0 0 0 0 4896300 2204900 2691400 732460 391700 340760 445140 240610 204530 0 0 0 14419 3536 15007 73632;73633;73634 74750;74751;74752 74750 3 IENELKEINTNQEALKR PFPRDMIDLEANFEKIENELKEINTNQEAL NELKEINTNQEALKRNFLELTELKFILRKT K I E K R N 1 1 3 0 0 1 4 0 0 2 2 2 0 0 0 0 1 0 0 0 0 0 17 2 2041.0804 Q93050;K7EM24;K7EN36;K7EPG4 Q93050 104 120 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 4 3.7617E-06 80.405 By MS/MS By MS/MS 1 1 1.0535 1.1344 9.07 2 Median 0.97766 1.0639 NaN 1 0 Median 1.1353 1.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14080000 6988100 7091800 4259500 2362600 1897000 9820400 4625500 5194900 0 0 0 0 0 0 0 0 0 0 0 0 14420 3576 15008 73635;73636 74753;74754 74754 2 IENLSNLHQLQMLELGSNR TRLKKLFLVNNKISKIENLSNLHQLQMLEL SNLHQLQMLELGSNRIRAIENIDTLTNLES K I E N R I 0 1 3 0 0 2 2 1 1 1 5 0 1 0 0 2 0 0 0 0 0 0 19 0 2208.1321 H7C003;Q15435;C9J177;C9JD73;B5MBZ8 H7C003 154 172 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 3 5.0729E-10 88.56 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2386 1.111 10.991 5 Median 1.135 1.111 NaN 1 0 Median 1.1723 1.0121 13.448 2 1 Median 1.2586 1.2505 NaN 1 0 Median 1.2386 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38538000 18290000 20249000 5379700 2482900 2896900 25571000 11699000 13872000 7433000 4028300 3404700 155010 79862 75151 0 0 0 0 0 0 14421 1254 15009 73637;73638;73639;73640;73641 74755;74756;74757;74758 74758 4 IENMDTFSNLLYVR ALSIFNELRKQDPYRIENMDTFSNLLYVRS RIENMDTFSNLLYVRSMKSELSYLAHNLCE R I E V R S 0 1 2 1 0 0 1 0 0 1 2 0 1 1 0 1 1 0 1 1 0 0 14 0 1713.8396 Q9UJX2 Q9UJX2 297 310 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.0017962 46.606 By matching By MS/MS By matching 1 2 1 1.1485 1.0775 12.711 4 Median NaN NaN NaN 0 0 Median 1.3431 1.1903 NaN 1 0 Median 1.0114 1.0608 16.86 2 0 Median 1.1582 0.97548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4868000 2096000 2771900 0 0 0 473200 223340 249860 3832600 1605000 2227700 562120 267710 294410 0 0 0 0 0 0 14422 4300 15010;15011 73642;73643;73644;73645 74759;74760;74761 74759 1920 3 IENPNQFVPLYTDPQEVLEMR KADEVEKSSSGMPIRIENPNQFVPLYTDPQ FVPLYTDPQEVLEMRNKIREQNRQDVKSAG R I E M R N 0 1 2 1 0 2 3 0 0 1 2 0 1 1 3 0 1 0 1 2 0 0 21 0 2531.2366 P35612 P35612 479 499 ADD2 Beta-adducin yes yes 3 0.057959 7.8038 By MS/MS 1 0.53128 0.56929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53128 0.56929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1624700 1158500 466210 0 0 0 0 0 0 1624700 1158500 466210 0 0 0 0 0 0 0 0 0 14423 2248 15012 73646 74762 74762 1 IENVETLVLQAPK LPSELERQEDQGCVRIENVETLVLQAPKDS VRIENVETLVLQAPKDSFALKSNERGIGQA R I E P K D 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1452.8188 O95235;D6R9E4;D6RBN1 O95235 90 102 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 2 0.00091964 62.303 By MS/MS By matching By matching 1 1 1 0.79698 0.82437 14.086 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79698 0.87499 NaN 1 0 Median 0.77944 0.66911 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95502 0.82437 NaN 1 0 Median 3749100 2289600 1459500 0 0 0 0 0 0 3320400 2057500 1262900 279580 163270 116310 0 0 0 149160 68881 80275 14424 1756 15013 73647;73648;73649 74763;74764 74764 2 IENVVLVVPVK TDEPGYYEDGAFGIRIENVVLVVPVKTKYN FGIRIENVVLVVPVKTKYNFNNRGSLTFEP R I E V K T 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 5 0 0 11 0 1207.754 Q9NQW7;Q5T6H7 Q9NQW7 536 546 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 0.00059752 66.435 By MS/MS By matching By matching 2 1 1 1.0786 1.0836 14.789 4 Median 0.99845 0.93253 14.246 2 0 Median 1.3778 1.1675 NaN 1 0 Median 1.068 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22262000 10283000 11979000 15410000 7338900 8071600 5379400 2236200 3143200 1472300 707980 764280 0 0 0 0 0 0 0 0 0 14425 4070 15014 73650;73651;73652;73653 74765;74766 74766 2 IENYLLR ALKTNPEKTEDALQKIENYLLRNHETRKYL KTEDALQKIENYLLRNHETRKYLQEQAYRL K I E L R N 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 7 0 919.51272 A0A0U1RQQ1;Q5VZK9 A0A0U1RQQ1 251 257 LRRC16A Leucine-rich repeat-containing protein 16A yes no 2 0.0087724 85.306 By MS/MS 1 1.296 1.0407 NaN 1 Median NaN NaN NaN 0 0 Median 1.296 1.0407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15032000 6433000 8599300 0 0 0 15032000 6433000 8599300 0 0 0 0 0 0 0 0 0 0 0 0 14426 303 15015 73654 74767 74767 1 IEPADAHVLQK FGFEIIETKKNYYKRIEPADAHVLQKNLKV YYKRIEPADAHVLQKNLKVPSGQNADVQKT R I E Q K N 2 0 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 11 0 1219.6561 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5 C9J5D1 102 112 NAA50 N-alpha-acetyltransferase 50 yes no 2;3 0.00024695 61.958 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.90354 0.85242 6.5144 6 Median 0.95404 0.90177 6.707 2 0 Median 0.95809 0.82455 8.8822 2 0 Median 0.7898 0.83829 NaN 1 0 Median 0.8868 0.8449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23815000 11651000 12163000 11593000 5506300 6087100 7143600 3334900 3808700 3806300 2195800 1610500 1271400 614430 656920 0 0 0 0 0 0 14427 677 15016 73655;73656;73657;73658;73659;73660 74768;74769;74770;74771;74772;74773;74774 74774 7 IEPDSEKDEVK ESDKRKCSRSPKKIKIEPDSEKDEVKGSDA KKIKIEPDSEKDEVKGSDAAKGADQNEMDI K I E V K G 0 0 0 2 0 0 3 0 0 1 0 2 0 0 1 1 0 0 0 1 0 0 11 1 1287.6194 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1089 1099 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.024362 24.291 By MS/MS 1 0.80889 0.82178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80889 0.82178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 429620 225730 203890 0 0 0 0 0 0 0 0 0 429620 225730 203890 0 0 0 0 0 0 14428 2762 15017 73661 74775 74775 1 IEPGVDPDDTYNETPYEK DITGEENPLNKLRVKIEPGVDPDDTYNETP GVDPDDTYNETPYEKGFCFVSYLAHLVGDQ K I E E K G 0 0 1 3 0 0 3 1 0 1 0 1 0 0 3 0 2 0 2 1 0 0 18 0 2080.9113 Q9H4A4;A6NKB8;C9JMZ3 Q9H4A4 399 416 RNPEP Aminopeptidase B yes no 2 5.6313E-06 73.927 By MS/MS By matching 1 1 0.56171 0.50799 18.861 2 Median 0.46958 0.44457 NaN 1 0 Median 0.67192 0.58047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9669300 6428200 3241200 8433100 5672200 2760900 1236300 756000 480280 0 0 0 0 0 0 0 0 0 0 0 0 14429 3964 15018 73662;73663 74776;74777 74776 2 IEPIPGESPK KQVDVAKKGQEVCVKIEPIPGESPKMFGRH EVCVKIEPIPGESPKMFGRHFEATDILVSK K I E P K M 0 0 0 0 0 0 2 1 0 2 0 1 0 0 3 1 0 0 0 0 0 0 10 0 1065.5706 A0A087WUT6;O60841 A0A087WUT6 1161 1170 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.0040958 54.416 By matching By MS/MS 1 2 0.66335 0.59824 87.31 3 Median 1.2917 1.2294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40073 0.3597 71.946 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10189000 6064900 4124100 2630100 1398600 1231500 0 0 0 0 0 0 7558800 4666300 2892500 0 0 0 0 0 0 14430 35 15019 73664;73665;73666 74778;74779 74778 2 IEPPDRR GIMPRHRFMSAYEQRIEPPDRRWQYLLMAA FMSAYEQRIEPPDRRWQYLLMAAEPYETIA R I E R R W 0 2 0 1 0 0 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 7 1 881.47191 Q15428 Q15428 159 165 SF3A2 Splicing factor 3A subunit 2 yes yes 2 0.022962 69.432 By MS/MS 1 0.72923 0.77423 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72923 0.77423 NaN 1 0 Median NaN NaN NaN 0 0 Median 1177800 682880 494930 0 0 0 0 0 0 0 0 0 0 0 0 1177800 682880 494930 0 0 0 14431 2953 15020 73667 74780 74780 1 IEPPGLFR FCIMDNHKERIANFKIEPPGLFRGRGNHPK ERIANFKIEPPGLFRGRGNHPKMGMLKRRI K I E F R G 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 8 0 927.5178 P11387;Q969P6;E5RIC7;E5RJ95;E5RFS0 P11387 355 362 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0032511 99.919 By matching By MS/MS By MS/MS By MS/MS By matching 2 3 4 3 2 0.87371 0.85784 41.611 14 Median NaN NaN NaN 0 0 Median 1.0274 0.92488 1.1812 2 0 Median 0.86354 0.87662 8.2305 3 0 Median 1.04 0.89374 36.675 4 0 Median 0.75889 0.78129 74.392 3 0 Plateau 0.91842 0.77671 21.558 2 0 Median 121230000 65930000 55304000 0 0 0 1140700 496330 644350 100470000 54682000 45785000 4001400 1940100 2061300 11213000 6577900 4635100 4413000 2234000 2179000 14432 1962 15021 73668;73669;73670;73671;73672;73673;73674;73675;73676;73677;73678;73679;73680;73681 74781;74782;74783;74784;74785;74786;74787;74788 74781 8 IEPSTVVPAQTPWDKPR HLKQIHEEALSKFQKIEPSTVVPAQTPWDK PSTVVPAQTPWDKPREFQITCGPDSFATDP K I E P R E 1 1 0 1 0 1 1 0 0 1 0 1 0 0 4 1 2 1 0 2 0 0 17 1 1920.0105 Q5JRX3 Q5JRX3 291 307 PITRM1 Presequence protease, mitochondrial yes yes 3 0.00012996 43.791 By matching By MS/MS By MS/MS 1 1 1 0.38913 0.44136 23.185 3 Median 0.37594 0.39408 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38913 0.44136 NaN 1 1 Median 0.64059 0.61561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23998000 16200000 7797200 14094000 9400900 4693500 0 0 0 8092800 5741300 2351600 1810500 1058400 752100 0 0 0 0 0 0 14433 3050 15022 73682;73683;73684 74789;74790;74791 74791 3 IEPSVNFLK MVEHTPDEESIDWTKIEPSVNFLKSPKDNV SIDWTKIEPSVNFLKSPKDNVDDPTGNFRS K I E L K S 0 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1045.5808 Q12907;D6RBV2 Q12907 292 300 LMAN2 Vesicular integral-membrane protein VIP36 yes no 2 0.0061228 55.531 By MS/MS By matching By matching By matching By matching 1 1 2 1 1 0.97128 0.82632 45.049 6 Median 0.90677 0.82137 NaN 1 0 Median 0.93763 0.79866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0965 0.9298 29.897 2 0 Median 2.4599 2.4385 NaN 1 0 Median 1.0061 0.83131 NaN 1 0 Median 88564000 50817000 37748000 56718000 35078000 21639000 25293000 13253000 12039000 0 0 0 1509900 774510 735390 3137300 767650 2369700 1906700 942550 964130 14434 2770 15023 73685;73686;73687;73688;73689;73690 74792;74793;74794 74793 3 IEQEFLTEALPVK PSEERVREIIINAVRIEQEFLTEALPVKLI VRIEQEFLTEALPVKLIGMNCTLMKQYIEF R I E V K L 1 0 0 0 0 1 3 0 0 1 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1515.8185 P31350;A0A286YFD6;C9JXC1 P31350 299 311 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 0.00019733 93.058 By MS/MS By MS/MS By matching 1 1 1 0.96728 0.81607 22.464 3 Median NaN NaN NaN 0 0 Median 0.88214 0.75149 NaN 1 1 Median 1.0721 1.148 NaN 1 0 Median 0.96728 0.81607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26264000 13254000 13011000 0 0 0 21143000 10754000 10390000 3873300 1779300 2094000 1247800 720610 527150 0 0 0 0 0 0 14435 2203 15024 73691;73692;73693 74795;74796 74796 1 IEQFVYSSPHDNK GRDTRGIFRVHQFEKIEQFVYSSPHDNKSW EKIEQFVYSSPHDNKSWEMFEEMITTAEEF K I E N K S 0 0 1 1 0 1 1 0 1 1 0 1 0 1 1 2 0 0 1 1 0 0 13 0 1562.7365 Q5T5C7;P49591 Q5T5C7 324 336 SARS Serine--tRNA ligase, cytoplasmic yes no 2;3 3.2754E-05 91.937 By MS/MS By matching By matching By MS/MS 2 2 1 2 0.938 0.88673 17.892 7 Median 0.83265 0.80003 16.835 2 0 Median 1.1067 0.94462 23.708 2 0 Median 1.0062 1.0355 NaN 1 0 Median 0.91632 0.78595 17.062 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29956000 15530000 14426000 7434700 3878700 3556000 7238400 3237300 4001200 2536600 1410900 1125700 12746000 7002800 5743400 0 0 0 0 0 0 14436 2387 15025 73694;73695;73696;73697;73698;73699;73700 74797;74798;74799 74798 2 IEQHYFEDR EKVKNYSNLLAFCRRIEQHYFEDRGKGRLS LAFCRRIEQHYFEDRGKGRLS_________ R I E D R G 0 1 0 1 0 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1235.5571 C9JNK6;O75431 C9JNK6 193 201 MTX2 Metaxin-2 yes no 3 0.0089695 35.541 By MS/MS By MS/MS 1 1 0.95654 0.85842 34.508 2 Median 1.1616 1.0956 NaN 1 0 Median 0.7877 0.67255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2928300 1334600 1593600 2165800 929330 1236500 762440 405300 357140 0 0 0 0 0 0 0 0 0 0 0 0 14437 712 15026 73701;73702 74800;74801 74800 2 IEQLQNHENEDIYK ETIGNLIEECGGLEKIEQLQNHENEDIYKL KIEQLQNHENEDIYKLAYEIIDQFFSSDDI K I E Y K L 0 0 2 1 0 2 3 0 1 2 1 1 0 0 0 0 0 0 1 0 0 0 14 0 1771.8377 O00629;H7C4F6 O00629 462 475 KPNA4 Importin subunit alpha-3 yes no 2;3 1.604E-08 113.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 1 2 1.0558 0.90558 20.218 15 Median 1.2544 1.1824 21.087 3 0 Median 1.0302 0.87214 33.862 3 1 Median 1.1261 1.1008 4.8476 3 0 Median 1.0558 0.90558 7.0501 3 0 Median 0.81664 0.77881 NaN 1 0 Median 1.0119 0.83908 7.8461 2 0 Median 137320000 64039000 73286000 23949000 11504000 12445000 22379000 10685000 11694000 39124000 17649000 21475000 37969000 17961000 20008000 8562100 3485300 5076900 5341400 2753600 2587800 14438 1475 15027 73703;73704;73705;73706;73707;73708;73709;73710;73711;73712;73713;73714;73715;73716;73717 74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814;74815 74812 14 IEQSQHLFQAHK EELNLGPRDANTLPKIEQSQHLFQAHKEKY LPKIEQSQHLFQAHKEKYDKMRNDVSVKLK K I E H K E 1 0 0 0 0 3 1 0 2 1 1 1 0 1 0 1 0 0 0 0 0 0 12 0 1464.7474 P53367 P53367 290 301 ARFIP1 Arfaptin-1 yes yes 3 0.0070151 30.205 By matching By MS/MS 1 2 1.4297 1.2832 6.8902 3 Median 1.3301 1.2832 NaN 1 0 Median 1.5135 1.3165 9.5166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5464600 2271600 3193100 1518100 726820 791250 3946600 1544800 2401800 0 0 0 0 0 0 0 0 0 0 0 0 14439 2465 15028 73718;73719;73720 74816;74817 74816 2 IEQVDKEDEITEK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA RKIEQVDKEDEITEKKAKKAKIKVKVEEEE K I E E K K 0 0 0 2 0 1 4 0 0 2 0 2 0 0 0 0 1 0 0 1 0 0 13 1 1574.7675 Q9Y2X3 Q9Y2X3 445 457 NOP58 Nucleolar protein 58 yes yes 3 0.0004897 52.265 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1674 1.1465 9.3213 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0855 1.1372 NaN 1 0 Median 1.4812 1.3677 NaN 1 0 Median 1.0831 1.1559 NaN 1 0 Median 1.2554 1.1189 NaN 1 0 Median 17337000 7713500 9624000 0 0 0 0 0 0 4395300 1843900 2551400 2319100 940680 1378500 8187600 3914100 4273400 2435400 1014700 1420700 14440 4396 15029 73721;73722;73723;73724 74818;74819;74820;74821;74822;74823;74824;74825 74821 8 IEQVDKEDEITEKK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA KIEQVDKEDEITEKKAKKAKIKVKVEEEEE K I E K K A 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3 Q9Y2X3 445 458 NOP58 Nucleolar protein 58 yes yes 3 0.035525 18.833 By MS/MS 1 0.94541 1.0298 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94541 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median 63714000 33063000 30651000 0 0 0 0 0 0 0 0 0 0 0 0 63714000 33063000 30651000 0 0 0 14441 4396 15030 73725 74826;74827 74826 2 IEQVFALQNATGDGK GSLDLQKCNMSPVVKIEQVFALQNATGDGK IEQVFALQNATGDGKFIDQFVYSTKGIGNK K I E G K F 2 0 1 1 0 2 1 2 0 1 1 1 0 1 0 0 1 0 0 1 0 0 15 0 1589.8049 Q9BZ95 Q9BZ95 503 517 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes yes 2 3.1368E-09 99.215 By MS/MS By matching 3 2 1.1416 1.098 33.03 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73617 0.78418 43.389 2 1 Median 1.2781 1.1384 0.89304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16348000 9088300 7259400 0 0 0 0 0 0 15493000 8758900 6734400 854270 329320 524950 0 0 0 0 0 0 14442 3896 15031 73726;73727;73728;73729;73730 74828;74829;74830;74831 74830 4 IERDAQEMADSLGVR EHDPQYAVILAFDVRIERDAQEMADSLGVR IERDAQEMADSLGVRIFSAEIIYHLFDAFT R I E V R I 2 2 0 2 0 1 2 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 15 1 1688.8152 A0A087WUT6;O60841 A0A087WUT6 1041 1055 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.00010276 62.377 By MS/MS By MS/MS 1 1 1.2154 1.3861 26.688 2 Median 1.0732 1.1477 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3764 1.674 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17209000 7288200 9920700 9669200 4378000 5291300 0 0 0 7539600 2910300 4629400 0 0 0 0 0 0 0 0 0 14443 35 15032 73731;73732 74832;74833;74834 74832 3 IEREKEELMER NEKKKREMAEKEKEKIEREKEELMERLKQI EKEKIEREKEELMERLKQIEEQTKKAQQEL K I E E R L 0 2 0 0 0 0 5 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 11 2 1460.7293 P26038;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 340 350 MSN;RDX Moesin;Radixin no no 3 0.00093098 51.252 By MS/MS 1 0.8244 0.83157 NaN 1 Median 0.8244 0.83157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4895200 2295500 2599700 4895200 2295500 2599700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14444 2139;2235 15033 73733 74835;74836 74836 2 IERPGEGSPMVDNPMR SLNDCRIIFVDEVFKIERPGEGSPMVDNPM ERPGEGSPMVDNPMRRKSGPSCKHCKDDVN K I E M R R 0 2 1 1 0 0 2 2 0 1 0 0 2 0 3 1 0 0 0 1 0 0 16 1 1783.8345 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 293 308 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 2.5512E-07 93.909 By matching By MS/MS By MS/MS By matching By matching 1 2 3 1 2 0.50789 0.44669 17.587 9 Median 0.69916 0.68625 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36734 0.42445 2.4542 2 1 Median 0.61457 0.54457 13.965 3 0 Plateau 0.36819 0.40004 NaN 1 0 Median 0.55104 0.48775 12.436 2 0 Median 56059000 37148000 18910000 3163900 1662600 1501300 0 0 0 27490000 19199000 8290900 15705000 9737600 5967900 7010300 4697200 2313100 2689100 1851800 837310 14445 20 15034;15035 73734;73735;73736;73737;73738;73739;73740;73741;73742 74837;74838;74839;74840;74841;74842;74843 74837 6;7 7 IESDVQEPTEPEDDLDIMLGNK IFDIDEAEEGVKDLKIESDVQEPTEPEDDL PTEPEDDLDIMLGNKKKKKKNVKFPDEDEI K I E N K K 0 0 1 4 0 1 4 1 0 2 2 1 1 0 2 1 1 0 0 1 0 0 22 0 2486.137 P20042 P20042 103 124 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 0.00024923 27.035 By MS/MS By matching 2 1 0.81135 0.85061 9.2888 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82111 0.82602 7.3592 2 0 Median 0.81135 0.72295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4669700 2409900 2259700 0 0 0 0 0 0 4394700 2228700 2166000 274990 181230 93753 0 0 0 0 0 0 14446 2072 15036 73743;73744;73745 74844;74845;74846 74845 3 IESEGLLSLTTQLVK ERFKALHSKLQALGKIESEGLLSLTTQLVK IESEGLLSLTTQLVKEKLSTCEAEDIATYE K I E V K E 0 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 2 0 0 1 0 0 15 0 1629.9189 G5EA06;Q92552 G5EA06 291 305 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 1.1956E-09 126.76 By MS/MS By matching 1 1 1.232 1.2005 5.762 2 Median NaN NaN NaN 0 0 Median 1.3528 1.1526 NaN 1 0 Median 1.122 1.2504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18757000 7807300 10949000 0 0 0 17967000 7487200 10479000 790150 320050 470100 0 0 0 0 0 0 0 0 0 14447 1131 15037 73746;73747 74847;74848;74849 74847 3 IESEKGKDAFPVAGQK IDIDPEETVKALKEKIESEKGKDAFPVAGQ ESEKGKDAFPVAGQKLIYAGKILNDDTALK K I E Q K L 2 0 0 1 0 1 2 2 0 1 0 3 0 1 1 1 0 0 0 1 0 0 16 2 1702.889 P54727;Q5W0S5;Q5W0S4 P54727 30 45 RAD23B UV excision repair protein RAD23 homolog B yes no 3 0.056603 11.918 By MS/MS 1 0.73539 0.7153 NaN 1 Median 0.73539 0.7153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2259100 1167400 1091600 2259100 1167400 1091600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14448 2486 15038 73748 74850 74850 1 IESFVETLKR ______________________________ ELSERIESFVETLKRGGGPRSSEEMARETL R I E K R G 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 10 1 1220.6765 P49770;H0YJJ8;G3V5E5 P49770 15 24 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 3 0.00032877 66.056 By MS/MS By matching By matching 1 1 1 2.0319 1.8419 21.507 3 Plateau 2.0675 2.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3818 1.5211 NaN 1 0 Median 1.7608 1.5316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16035000 5341300 10693000 9240100 2912900 6327200 0 0 0 1473100 568880 904260 5321300 1859500 3461900 0 0 0 0 0 0 14449 2398 15039 73749;73750;73751 74851 74851 1 IESGGGNILIHHSR LDRVRESSTTADKEKIESGGGNILIHHSRD KIESGGGNILIHHSRDTAEKQWAETWVLTL K I E S R D 0 1 1 0 0 0 1 3 2 3 1 0 0 0 0 2 0 0 0 0 0 0 14 0 1488.7797 A0A286YFF8;Q7Z3U7 A0A286YFF8 1092 1105 MON2 Protein MON2 homolog yes no 3 0.0020528 35.891 By MS/MS By MS/MS By matching 1 1 1 1.0769 0.91856 27.046 3 Median 1.1231 1.1056 NaN 1 0 Median 1.0769 0.91856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77753 0.64898 NaN 1 0 Median 8395500 3779000 4616600 3025800 1281900 1743900 4013500 1788100 2225400 0 0 0 0 0 0 0 0 0 1356200 708890 647280 14450 353 15040 73752;73753;73754 74852;74853;74854 74853 3 IESHETANLQDDR PDQNSKQLNAIESTKIESHETANLQDDRNS TKIESHETANLQDDRNSQSSSVSYLESKSV K I E D R N 1 1 1 2 0 1 2 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 13 0 1526.6961 Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576 459 471 PHF3 PHD finger protein 3 yes no 3 0.00099685 43.382 By MS/MS By MS/MS 2 2 1.0339 0.99513 18.429 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7661 0.82705 23.066 2 0 Median 1.1856 1.0304 1.8336 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4922400 2608400 2313900 0 0 0 0 0 0 3198600 1815100 1383500 1723700 793320 930430 0 0 0 0 0 0 14451 3539 15041 73755;73756;73757;73758 74855;74856;74857;74858;74859 74855 5 IESHETANLQDDRNSQSSSVSYLESK PDQNSKQLNAIESTKIESHETANLQDDRNS DRNSQSSSVSYLESKSVKSKHTKPVIHSKQ K I E S K S 1 1 2 2 0 2 3 0 1 1 2 1 0 0 0 7 1 0 1 1 0 0 26 1 2923.3432 Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576 459 484 PHF3 PHD finger protein 3 yes no 4 2.7554E-25 76.198 By MS/MS 1 0.75915 0.90976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75915 0.90976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17148000 8675900 8472100 0 0 0 0 0 0 17148000 8675900 8472100 0 0 0 0 0 0 0 0 0 14452 3539 15042 73759 74860;74861 74860 2 IESILMSLPLTAR YDRGTKFGLFTPGSRIESILMSLPLTARWE SRIESILMSLPLTARWEYMHSPSENSKEAE R I E A R W 1 1 0 0 0 0 1 0 0 2 3 0 1 0 1 2 1 0 0 0 0 0 13 0 1442.8167 P36551;H0YA22 P36551 414 426 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes no 2 0.0014668 62.823 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 3 1 1 1.0523 0.97208 27.223 11 Median 0.84668 0.83356 2.9199 2 0 Median 0.98047 0.85001 14.638 4 2 Median 1.1313 1.0994 15.205 3 0 Median NaN NaN NaN 0 0 Median 1.5536 1.5807 NaN 1 0 Median 1.8553 1.6355 NaN 1 0 Median 31790000 14729000 17061000 3522600 1985700 1536900 25620000 11691000 13929000 2225900 921720 1304100 0 0 0 193650 65074 128580 227950 65184 162760 14453 2259 15043;15044 73760;73761;73762;73763;73764;73765;73766;73767;73768;73769;73770 74862;74863;74864;74865;74866;74867;74868 74866 1009 7 IESIQLMMDSETGR ITEDMLRGIFEPFGRIESIQLMMDSETGRS RIESIQLMMDSETGRSKGYGFITFSDSECA R I E G R S 0 1 0 1 0 1 2 1 0 2 1 0 2 0 0 2 1 0 0 0 0 0 14 0 1608.7487 Q14498;A0A0U1RQH7;G3XAC6;A0A0U1RQW2 Q14498 276 289 RBM39 RNA-binding protein 39 yes no 2 1.9378E-19 145.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 2 5 1 1.0325 0.97806 50.2 17 Median 1.053 1.0494 9.9542 2 1 Median 1.3342 1.1958 NaN 1 0 Median 1.1216 1.1369 85.749 6 3 Median 1.0603 0.92287 13.643 2 0 Median 0.90352 0.92977 15.272 5 0 Median 1.0325 0.88643 NaN 1 0 Median 71478000 37079000 34398000 5726400 3159000 2567500 156580 70558 86025 39603000 20759000 18844000 4218100 2240600 1977500 20993000 10460000 10533000 780640 389400 391230 14454 2879 15045;15046 73771;73772;73773;73774;73775;73776;73777;73778;73779;73780;73781;73782;73783;73784;73785;73786;73787 74869;74870;74871;74872;74873;74874;74875;74876;74877;74878;74879;74880;74881 74871 1570;1571 13 IESLPPLLIGK KLTSNLRTIDLSNNKIESLPPLLIGKFTLL SNNKIESLPPLLIGKFTLLKSLSLNNNKLT K I E G K F 0 0 0 0 0 0 1 1 0 2 3 1 0 0 2 1 0 0 0 0 0 0 11 0 1178.7275 H3BSW0;A0A3B3ISV5;Q8N9N7 H3BSW0 50 60 LRRC57 Leucine-rich repeat-containing protein 57 yes no 2 0.026273 32.841 By MS/MS By matching 1 1 0.62673 0.60209 3.9329 2 Median 0.60964 0.58558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64429 0.61907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4121800 2399300 1722500 1826200 1012800 813450 0 0 0 2295600 1386500 909080 0 0 0 0 0 0 0 0 0 14455 429 15047 73788;73789 74882 74882 1 IESLSSQLSNLQK TVNSAREELMESRMRIESLSSQLSNLQKES MRIESLSSQLSNLQKESRACLERIQELEDL R I E Q K E 0 0 1 0 0 2 1 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 13 0 1445.7726 P20700;E9PBF6;A0A0D9SFE5 P20700 300 312 LMNB1 Lamin-B1 yes no 2;3 2.082E-15 187.97 By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 8 2 0.96078 0.96142 34.856 21 Median NaN NaN NaN 0 0 Median 1.2461 1.2549 34.18 3 0 Median 0.99298 0.96142 8.8958 3 0 Plateau 1.7581 1.5651 25.325 5 2 Median 0.87672 0.83721 15.389 8 0 Median 1.4166 1.1858 2.3478 2 0 Median 440360000 223680000 216680000 0 0 0 1533500 677920 855590 139790000 70543000 69248000 18972000 6204300 12767000 265870000 140400000 125470000 14193000 5860800 8332700 14456 2084 15048 73790;73791;73792;73793;73794;73795;73796;73797;73798;73799;73800;73801;73802;73803;73804;73805;73806;73807;73808;73809;73810 74883;74884;74885;74886;74887;74888;74889;74890;74891;74892;74893;74894;74895;74896;74897;74898;74899;74900;74901;74902;74903;74904;74905;74906;74907;74908 74897 26 IESPEEISLLPK IPRYRFQSNHMDMVRIESPEEISLLPKTSW MVRIESPEEISLLPKTSWNIPQPGEGDVRE R I E P K T 0 0 0 0 0 0 3 0 0 2 2 1 0 0 2 2 0 0 0 0 0 0 12 0 1353.7391 A0A0A6YYL1;A0A0U1RQM3;P49914;A0A0U1RR23 A0A0A6YYL1 71 82 ST20-MTHFS;MTHFS 5-formyltetrahydrofolate cyclo-ligase yes no 2 0.00063919 62.823 By MS/MS By matching 1 1 0.73168 0.65299 2.7124 2 Median 0.68744 0.64058 NaN 1 0 Median 0.77876 0.66563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9581600 5650200 3931400 8798900 5202900 3596000 782660 447320 335340 0 0 0 0 0 0 0 0 0 0 0 0 14457 207 15049 73811;73812 74909;74910 74909 2 IESVLSSSGKR PDLELPSWLTTGNYRIESVLSSSGKRLGCI GNYRIESVLSSSGKRLGCIKIAASLKGI__ R I E K R L 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 4 0 0 0 1 0 0 11 1 1161.6354 P17900 P17900 170 180 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 2 0.00027052 84.213 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14458 2048 15050 73813 74911 74911 1 IESWLETHALLEK IRQHFSTGGWRLVNRIESWLETHALLEKAQ NRIESWLETHALLEKAQALPNGVPKASSSP R I E E K A 1 0 0 0 0 0 3 0 1 1 3 1 0 0 0 1 1 1 0 0 0 0 13 0 1567.8246 Q9C0C9;K7ES11 Q9C0C9 1142 1154 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.0011902 72.652 By MS/MS 1 0.97952 0.94261 NaN 1 Median 0.97952 0.94261 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4062100 2223900 1838200 4062100 2223900 1838200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14459 3904 15051 73814 74912 74912 1 IETDLPQIR VAEAAIQIFRNTGHKIETDLPQIRSTLIPI RNTGHKIETDLPQIRSTLIPILHQKAKRGT K I E I R S 0 1 0 1 0 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 9 0 1083.5924 Q29RF7 Q29RF7 709 717 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.00045508 96.253 By MS/MS By MS/MS By MS/MS 1 1 2 1.0486 0.95869 6.8343 4 Median NaN NaN NaN 0 0 Median 1.0716 0.92224 NaN 1 0 Median 0.9063 0.99657 NaN 1 1 Median 1.0865 0.93868 10.278 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17045000 8575300 8470000 0 0 0 1688200 753690 934510 10749000 5650500 5098600 4608000 2171100 2436900 0 0 0 0 0 0 14460 3003 15052 73815;73816;73817;73818 74913;74914;74915;74916;74917;74918 74913 6 IETIEVMEDR TEEYNLRDYFEKYGKIETIEVMEDRQSGKK EKYGKIETIEVMEDRQSGKKRGFAFVTFDD K I E D R Q 0 1 0 1 0 0 3 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.5911 P51991 P51991 152 161 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 2.1367E-10 174.02 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 5 11 10 1.1275 1.0593 22.715 34 Median 1.1962 1.1851 34.986 2 0 Median 1.3398 1.1681 NaN 1 0 Median 1.0438 1.1056 13.294 5 0 Median 1.2892 1.0552 35.628 5 2 Median 1.0545 1.0635 25.06 11 5 Median 1.3099 1.0415 16.775 10 0 Median 1361600000 618640000 743010000 6942100 2584800 4357300 15190000 6399300 8791100 698440000 325390000 373050000 141580000 57621000 83961000 296870000 143230000 153640000 202610000 83407000 119210000 14461 2446 15053;15054 73819;73820;73821;73822;73823;73824;73825;73826;73827;73828;73829;73830;73831;73832;73833;73834;73835;73836;73837;73838;73839;73840;73841;73842;73843;73844;73845;73846;73847;73848;73849;73850;73851;73852 74919;74920;74921;74922;74923;74924;74925;74926;74927;74928;74929;74930;74931;74932;74933;74934;74935;74936;74937;74938;74939;74940;74941;74942;74943;74944;74945;74946;74947;74948;74949;74950;74951;74952;74953;74954;74955;74956;74957;74958;74959;74960;74961;74962;74963;74964;74965;74966;74967 74944 1141 49 IETINFHEVK DMLYTETDLEESMDKIETINFHEVKEVAGI ESMDKIETINFHEVKEVAGIKFWCYHAGHV K I E V K E 0 0 1 0 0 0 2 0 1 2 0 1 0 1 0 0 1 0 0 1 0 0 10 0 1228.6452 Q9UKF6;G5E9W3;C9JZH6 Q9UKF6 135 144 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3 0.012659 29.053 By MS/MS By matching 1 1 1.0912 1.0384 13.02 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0928 1.1386 NaN 1 0 Median 1.0896 0.9471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6871100 3495800 3375200 0 0 0 0 0 0 6177000 3145000 3032000 694060 350840 343220 0 0 0 0 0 0 14462 4309 15055 73853;73854 74968 74968 1 IETLDPALIRPGR FDSRGDVKVIMATNRIETLDPALIRPGRID NRIETLDPALIRPGRIDRKIEFPLPDEKTK R I E G R I 1 2 0 1 0 0 1 1 0 2 2 0 0 0 2 0 1 0 0 0 0 0 13 1 1449.8304 P62191 P62191 334 346 PSMC1 26S protease regulatory subunit 4 yes yes 2;3 0.0011559 48.423 By MS/MS 2 0.97457 0.98416 15.481 2 Median 0.97457 0.98416 15.481 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31372000 13427000 17945000 31372000 13427000 17945000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14463 2571 15056 73855;73856 74969;74970;74971;74972 74970 4 IETMLGDVAVAVHPK QGSDSDEEVVVATTRIETMLGDVAVAVHPK IETMLGDVAVAVHPKDTRYQHLKGKNVIHP R I E P K D 2 0 0 1 0 0 1 1 1 1 1 1 1 0 1 0 1 0 0 3 0 0 15 0 1578.844 P26640;A0A140T936 P26640 538 552 VARS Valine--tRNA ligase yes no 3 0.00011874 65.805 By MS/MS By matching By MS/MS 2 2 2 0.82502 0.73691 21.057 6 Median 0.81566 0.80561 22.081 2 0 Median 0.73897 0.65876 25.329 2 0 Median NaN NaN NaN 0 0 Median 0.91845 0.78218 24.806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15384000 7849400 7534800 6363700 3383600 2980100 2688700 1601200 1087400 0 0 0 6331900 2864600 3467300 0 0 0 0 0 0 14464 2148 15057;15058 73857;73858;73859;73860;73861;73862 74973;74974;74975;74976 74975 912 4 IETNENNLESAK MLRTAVDSLVAYSVKIETNENNLESAKGLL SVKIETNENNLESAKGLLDDLRNDLDRLFV K I E A K G 1 0 3 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1360.647 Q07065 Q07065 567 578 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 2.4033E-09 170.99 By MS/MS By MS/MS By MS/MS 1 1 1 1.0228 1.0865 22.48 3 Median 0.95869 0.9009 NaN 1 0 Median 1.6864 1.4095 NaN 1 0 Median 1.0228 1.0865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32746000 14351000 18395000 11279000 5964700 5314600 17010000 6317800 10693000 4455800 2068000 2387700 0 0 0 0 0 0 0 0 0 14465 2730 15059 73863;73864;73865 74977;74978;74979;74980 74980 3 IETQDIQALR QERQMLGLQGLLPPKIETQDIQALRFHRNL LLPPKIETQDIQALRFHRNLKKMTSPLEKY K I E L R F 1 1 0 1 0 2 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1185.6354 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37;A0A1W2PRS2;A0A1W2PRY9;A0A1W2PQH4;A0A1W2PRH1 A0A1W2PPH1 58 67 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 2.9255E-07 128.69 By MS/MS By MS/MS 2 1 1.0932 0.98936 33.246 2 Median 0.8263 0.78209 NaN 1 1 Median 1.4464 1.2516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26393000 13969000 12424000 17038000 10410000 6628500 9354600 3558900 5795800 0 0 0 0 0 0 0 0 0 0 0 0 14466 337 15060 73866;73867;73868 74981;74982;74983 74982 3 IETTHPPLPPAHPPPDR EENKAAEPPPPKIPKIETTHPPLPPAHPPP TTHPPLPPAHPPPDRKPPLAAALGEAEPPG K I E D R K 1 1 0 1 0 0 1 0 2 1 1 0 0 0 7 0 2 0 0 0 0 0 17 0 1870.969 O75909 O75909 358 374 CCNK Cyclin-K yes yes 4 0.00017073 39.338 By MS/MS By MS/MS 1 1 0.45115 0.42456 18.7 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45995 0.48458 NaN 1 0 Median 0.44253 0.37198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4665500 2986200 1679400 0 0 0 0 0 0 4020200 2534800 1485500 645280 451400 193870 0 0 0 0 0 0 14467 1704 15061 73869;73870 74984;74985 74984 2 IETTVPPSGLNLNR LQSNSDSTYEDLINKIETTVPPSGLNLNRF KIETTVPPSGLNLNRFTEDSLLRHAQFVVE K I E N R F 0 1 2 0 0 0 1 1 0 1 2 0 0 0 2 1 2 0 0 1 0 0 14 0 1509.8151 P26358 P26358 531 544 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 1.3918E-08 112.13 By MS/MS By matching 1 2 0.81923 0.83718 16.631 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7681 0.83718 NaN 1 0 Median 0.97448 0.85144 23.479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22407000 11429000 10977000 0 0 0 0 0 0 17231000 8687900 8542800 5175900 2741300 2434600 0 0 0 0 0 0 14468 2142 15062 73871;73872;73873 74986;74987;74988;74989 74986 4 IEVEKPFAIAK RDKPLKDVIIADCGKIEVEKPFAIAKE___ DCGKIEVEKPFAIAKE______________ K I E A K E 2 0 0 0 0 0 2 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 11 1 1243.7176 P23284 P23284 205 215 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 0.00019699 115.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 3 2 0.97764 0.98526 18.015 16 Median 0.93626 0.95086 5.189 3 0 Median 1.0571 0.95146 32.705 4 1 Median 0.95399 0.94496 1.0917 2 0 Median 1.1966 1.0792 5.3191 2 0 Median 0.89181 0.99644 4.6521 3 0 Median 1.2767 1.108 3.7226 2 0 Median 333950000 163830000 170120000 47021000 22930000 24092000 19031000 10904000 8127600 189160000 93842000 95320000 50292000 23167000 27125000 5765400 3041400 2723900 22677000 9948700 12728000 14469 2109 15063 73874;73875;73876;73877;73878;73879;73880;73881;73882;73883;73884;73885;73886;73887;73888;73889 74990;74991;74992;74993;74994;74995;74996;74997;74998;74999;75000;75001;75002;75003;75004;75005;75006;75007;75008;75009 74998 20 IEVEKPFAIAKE RDKPLKDVIIADCGKIEVEKPFAIAKE___ CGKIEVEKPFAIAKE_______________ K I E K E - 2 0 0 0 0 0 3 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 12 2 1372.7602 P23284 P23284 205 216 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 2.0616E-05 120.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 2 4 1.071 1.0189 11.283 16 Median 0.985 0.99968 7.1935 3 0 Plateau 1.1159 0.98708 11.248 3 0 Median 0.88213 0.87328 4.6727 2 0 Median 1.1853 1.0703 6.9461 2 0 Median 0.8612 0.99012 15.211 2 0 Median 1.3261 1.1186 7.5334 4 0 Median 635090000 308230000 326860000 131270000 66615000 64651000 33014000 15158000 17856000 227370000 116730000 110640000 210000000 93470000 116530000 22752000 11665000 11087000 10684000 4590900 6093500 14470 2109 15064 73890;73891;73892;73893;73894;73895;73896;73897;73898;73899;73900;73901;73902;73903;73904;73905 75010;75011;75012;75013;75014;75015;75016;75017;75018;75019;75020;75021;75022;75023;75024;75025;75026 75011 17 IEVGDVNPSETQYISEPK IQKLFVVDHVIKITRIEVGDVNPSETQYIS GDVNPSETQYISEPKLCPECREGLLCQQQR R I E P K L 0 0 1 1 0 1 3 1 0 2 0 1 0 0 2 2 1 0 1 2 0 0 18 0 2003.9688 Q86UV5;A0A0A0MRS6 Q86UV5 822 839 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 1.621E-11 107.65 By MS/MS By MS/MS 2 1 0.77409 0.80913 3.698 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76691 0.82861 3.365 2 0 Median 0.92849 0.78896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32929000 18849000 14080000 0 0 0 0 0 0 30804000 17721000 13084000 2124400 1128200 996180 0 0 0 0 0 0 14471 3281 15065 73906;73907;73908 75027;75028;75029 75028 3 IEVIEIMTDR TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK EQYGKIEVIEIMTDRGSGKKRGFAFVTFDD K I E D R G 0 1 0 1 0 0 2 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1217.6326 H0YH80;P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;F8VYN5;A0A2R8Y4L2 P09651 131 140 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2 3.2454E-10 170.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 6 8 9 16 10 1.1286 1.025 54.638 47 Median 1.2093 1.1981 NaN 1 0 Median 1.199 1.0466 38.035 5 1 Median 1.0593 1.0554 123.96 8 1 Median 1.196 0.97424 26.291 9 0 Median 1.053 1.0817 20.737 14 5 Median 1.1703 0.92659 13.31 10 0 Median 2426700000 1126700000 1300000000 5627900 2548900 3079000 72332000 31982000 40350000 1295800000 619200000 676620000 201350000 86777000 114580000 381860000 174890000 206970000 469670000 211310000 258360000 14472 1919;365;1183 15066;15067 73909;73910;73911;73912;73913;73914;73915;73916;73917;73918;73919;73920;73921;73922;73923;73924;73925;73926;73927;73928;73929;73930;73931;73932;73933;73934;73935;73936;73937;73938;73939;73940;73941;73942;73943;73944;73945;73946;73947;73948;73949;73950;73951;73952;73953;73954;73955;73956;73957;73958 75030;75031;75032;75033;75034;75035;75036;75037;75038;75039;75040;75041;75042;75043;75044;75045;75046;75047;75048;75049;75050;75051;75052;75053;75054;75055;75056;75057;75058;75059;75060;75061;75062;75063;75064;75065;75066;75067;75068;75069;75070;75071;75072;75073;75074;75075;75076;75077;75078;75079;75080;75081;75082;75083;75084;75085;75086;75087;75088;75089;75090;75091;75092;75093;75094;75095;75096;75097;75098;75099;75100;75101;75102;75103 75071 170 74 IEVIKPGDLGVDLTSK RYATLPNIMKAKKKKIEVIKPGDLGVDLTS EVIKPGDLGVDLTSKLSVISVEDPPQRTAG K I E S K L 0 0 0 2 0 0 1 2 0 2 2 2 0 0 1 1 1 0 0 2 0 0 16 1 1682.9455 P38117;M0QY67 P38117 206 221 ETFB Electron transfer flavoprotein subunit beta yes no 2;3 3.5625E-05 73.848 By MS/MS By matching By MS/MS By matching By matching 3 2 2 2 1 1.0763 1.0041 30.2 10 Median 0.81479 0.82649 8.8068 3 0 Median 1.4409 1.3194 5.0617 2 0 Median 0.87985 0.87708 10.386 2 0 Median 1.3036 1.1711 14.515 2 0 Median 1.9998 2.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median 80881000 42383000 38498000 58284000 31550000 26735000 4945200 1941000 3004200 16170000 8393700 7775800 577500 236970 340520 904160 261570 642600 0 0 0 14473 2272 15068 73959;73960;73961;73962;73963;73964;73965;73966;73967;73968 75104;75105;75106;75107;75108;75109 75106 6 IEVLEEELR EMLKSLEDLKLKNTKIEVLEEELRLARDAN KLKNTKIEVLEEELRLARDANSENCNKNKF K I E L R L 0 1 0 0 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1128.6027 P15924 P15924 1034 1042 DSP Desmoplakin yes yes 2 0.00043177 128.69 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 3 1 2 2 0.69302 0.69835 33.276 10 Median 0.87174 0.84894 NaN 1 0 Median 0.78427 0.63952 NaN 1 0 Median 0.53512 0.6309 20.762 3 0 Median 0.3885 0.34594 NaN 1 0 Median 0.69302 0.72084 4.2358 2 0 Median 1.2406 1.0218 2.0711 2 0 Median 57028000 31643000 25385000 17755000 8450700 9304600 9375800 5197800 4177900 12561000 8187000 4374100 458110 367450 90654 15260000 8610200 6650000 1617600 829800 787770 14474 2021 15069 73969;73970;73971;73972;73973;73974;73975;73976;73977;73978;73979 75110;75111;75112;75113;75114;75115;75116;75117;75118 75114 9 IEVLQQHENEDIYK STIAEIIEECGGLEKIEVLQQHENEDIYKL KIEVLQQHENEDIYKLAFEIIDQYFSGDDI K I E Y K L 0 0 1 1 0 2 3 0 1 2 1 1 0 0 0 0 0 0 1 1 0 0 14 0 1756.8632 O00505;H0Y4S9 O00505 462 475 KPNA3 Importin subunit alpha-4 yes no 2;3 0.00021585 67.726 By matching By MS/MS By MS/MS By matching 1 3 3 3 1.1573 1.0515 9.0113 10 Median 1.0854 1.0311 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1359 1.0968 5.126 3 0 Median 1.1792 1.0109 12.787 3 0 Median NaN NaN NaN 0 0 Median 1.2538 1.0555 8.1 3 0 Plateau 71495000 32417000 39078000 3912200 2122400 1789900 0 0 0 45357000 20704000 24654000 17864000 7543300 10320000 0 0 0 4362000 2047300 2314700 14475 1469 15070 73980;73981;73982;73983;73984;73985;73986;73987;73988;73989 75119;75120;75121;75122;75123;75124;75125 75120 7 IEVNVELRK FKNKGKDSTEMRRRRIEVNVELRKAKKDDQ EMRRRRIEVNVELRKAKKDDQMLKRRNVSS R I E R K A 0 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1098.6397 P52292;J3QLL0;J3KS65 P52292 32 40 KPNA2 Importin subunit alpha-1 yes no 2 0.00086817 109.71 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.4268 1.4875 19.205 4 Median 1.2868 1.304 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.521 1.6969 NaN 1 0 Median 1.3384 1.2559 NaN 1 0 Median 1.7837 1.8517 NaN 1 0 Median NaN NaN NaN 0 0 Median 13017000 5234200 7782900 2143100 858300 1284800 0 0 0 3126700 1130100 1996600 5889900 2514500 3375400 1857400 731280 1126100 0 0 0 14476 2448 15071 73990;73991;73992;73993 75126;75127 75127 2 IEVPLYSLLEQTHLK NRSQFEELCAELLQKIEVPLYSLLEQTHLK IEVPLYSLLEQTHLKVEDVSAVEIVGGATR K I E L K V 0 0 0 0 0 1 2 0 1 1 4 1 0 0 1 1 1 0 1 1 0 0 15 0 1781.9927 Q92598;A0A0A0MSM0 Q92598 317 331 HSPH1 Heat shock protein 105 kDa yes no 2 0.022473 40.589 By MS/MS 1 0.92098 0.82252 NaN 1 Median NaN NaN NaN 0 0 Median 0.92098 0.82252 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1171100 587730 583390 0 0 0 1171100 587730 583390 0 0 0 0 0 0 0 0 0 0 0 0 14477 3541 15072 73994 75128 75128 1 IEVQDTSGGTTALR CYQEVSQCFGVLSSRIEVQDTSGGTTALRP RIEVQDTSGGTTALRPSASTQALSSSVSSS R I E L R P 1 1 0 1 0 1 1 2 0 1 1 0 0 0 0 1 3 0 0 1 0 0 14 0 1446.7314 Q16531;F5GY55 Q16531 740 753 DDB1 DNA damage-binding protein 1 yes no 2 1.0543E-05 90.05 By MS/MS 1 1.8193 1.5458 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8193 1.5458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229800 1540700 2689000 0 0 0 0 0 0 0 0 0 4229800 1540700 2689000 0 0 0 0 0 0 14478 2985 15073 73995 75129;75130 75129 2 IEVQDTSGGTTALRPSASTQALSSSVSSSK CYQEVSQCFGVLSSRIEVQDTSGGTTALRP SASTQALSSSVSSSKLFSSSTAPHETSFGE R I E S K L 3 1 0 1 0 2 1 2 0 1 2 1 0 0 1 9 4 0 0 2 0 0 30 1 2951.4684 Q16531;F5GY55 Q16531 740 769 DDB1 DNA damage-binding protein 1 yes no 3 4.177E-63 165.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 5 3 2 0.87631 0.89856 25.487 16 Median 0.89631 0.90694 3.2267 3 0 Median 0.98478 0.90716 4.5273 3 0 Median 0.64483 0.72881 14.881 5 0 Median 1.4123 1.3446 3.299 3 0 Median 0.77767 0.86784 5.5546 2 0 Median NaN NaN NaN 0 0 Median 558060000 288020000 270040000 169240000 85670000 83567000 30737000 13694000 17043000 304580000 166320000 138260000 42060000 16217000 25843000 11443000 6116600 5326300 0 0 0 14479 2985 15074 73996;73997;73998;73999;74000;74001;74002;74003;74004;74005;74006;74007;74008;74009;74010;74011 75131;75132;75133;75134;75135;75136;75137;75138;75139;75140;75141;75142;75143;75144;75145;75146;75147;75148;75149;75150;75151;75152;75153 75153 23 IEVSQLLK ALNKSTVPTDFSSAKIEVSQLLKGDASLKM TDFSSAKIEVSQLLKGDASLKMDKSDAVSH K I E L K G 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 928.55933 A0A2R8Y484;Q08722 A0A2R8Y484 41 48 CD47 Leukocyte surface antigen CD47 yes no 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS By matching By matching 3 5 2 5 3 1.1521 1.0865 11.714 18 Median 1.123 1.0892 2.996 3 0 Median 1.1112 0.97553 10.638 5 0 Median 1.0498 1.1427 3.2756 2 0 Median 1.3037 1.1767 14.177 5 0 Median NaN NaN NaN 0 0 Median 1.1584 0.99403 7.1717 3 0 Median 197430000 92277000 105160000 66261000 30849000 35412000 47049000 21102000 25947000 72579000 35007000 37572000 9934900 4619500 5315400 0 0 0 1609100 698660 910480 14480 362 15075 74012;74013;74014;74015;74016;74017;74018;74019;74020;74021;74022;74023;74024;74025;74026;74027;74028;74029 75154;75155;75156;75157;75158;75159 75155 6 IEVVNFLVPNAVYDIVK VPCGTSGGVMIYFDRIEVVNFLVPNAVYDI VVNFLVPNAVYDIVKNYTADYDKALIFNKI R I E V K N 1 0 2 1 0 0 1 0 0 2 1 1 0 1 1 0 0 0 1 5 0 0 17 0 1931.0768 O94905;E5RHW4;E5RJ09 O94905 89 105 ERLIN2 Erlin-2 yes no 2 2.2843E-05 70.622 By MS/MS By MS/MS By matching 1 1 1 1.1819 1.0074 14.094 3 Plateau 0.78109 0.7673 NaN 1 0 Median 1.1819 1.0074 NaN 1 0 Median 0.83977 0.93661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12462000 5662200 6799900 771440 432040 339400 10621000 4662600 5958100 1069900 567480 502380 0 0 0 0 0 0 0 0 0 14481 848 15076 74030;74031;74032 75160;75161;75162 75161 3 IEWLESHQDADIEDFK SSEDKETMEKAVEEKIEWLESHQDADIEDF EWLESHQDADIEDFKAKKKELEEIVQPIIS K I E F K A 1 0 0 3 0 1 3 0 1 2 1 1 0 1 0 1 0 1 0 0 0 0 16 0 1973.9007 P11021 P11021 602 617 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.022946 17.917 By MS/MS By MS/MS By matching 1 2 1 1.1894 1.0207 7.2494 4 Median 0.97237 0.8989 NaN 1 0 Median 1.1894 1.0207 0.12213 2 0 Median NaN NaN NaN 0 0 Median 1.2303 1.0616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24171000 10747000 13425000 6627600 3374800 3252800 17344000 7296100 10048000 0 0 0 199870 75676 124200 0 0 0 0 0 0 14482 1948 15077 74033;74034;74035;74036 75163;75164;75165;75166 75165 4 IEWLESHQDADIEDFKAK SSEDKETMEKAVEEKIEWLESHQDADIEDF LESHQDADIEDFKAKKKELEEIVQPIISKL K I E A K K 2 0 0 3 0 1 3 0 1 2 1 2 0 1 0 1 0 1 0 0 0 0 18 1 2173.0328 P11021 P11021 602 619 HSPA5 78 kDa glucose-regulated protein yes yes 2;3;4 1.7441E-06 71.558 By MS/MS By matching By matching 4 1 1 1.1744 1.1678 17.83 6 Median 1.1406 1.1678 5.3645 4 0 Median 1.1591 1.0884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5644 1.7504 NaN 1 0 Median NaN NaN NaN 0 0 Median 79871000 36487000 43383000 76330000 34996000 41333000 1483700 667860 815800 0 0 0 0 0 0 2057300 823230 1234100 0 0 0 14483 1948 15078 74037;74038;74039;74040;74041;74042 75167;75168;75169;75170;75171;75172 75168 6 IEYAKPTR SLNGADIYSGCCTLKIEYAKPTRLNVFKND SGCCTLKIEYAKPTRLNVFKNDQDTWDYTN K I E T R L 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 8 1 976.53418 A0A3B3ITJ4;M0QXS5;M0R1W6;B4DVF8;P14866 P14866 265 272 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.011078 113.89 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 0.84747 0.89165 18.199 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61338 0.68144 NaN 1 0 Median 1.1741 1.0765 NaN 1 0 Median 0.82101 0.8413 14.752 3 0 Median 1.0628 0.9607 NaN 1 0 Median 17895000 9314400 8580300 0 0 0 0 0 0 227810 141300 86508 471870 210100 261760 13178000 7186700 5991300 4017000 1776300 2240700 14484 2011;436 15079 74043;74044;74045;74046;74047;74048 75173;75174;75175;75176;75177;75178;75179 75173 7 IEYNDQNDGSCDVK VGSLGFAIEGPSQAKIEYNDQNDGSCDVKY KIEYNDQNDGSCDVKYWPKEPGEYAVHIMC K I E V K Y 0 0 2 3 1 1 1 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 14 0 1655.6733 O75369;E7EN95 O75369 594 607 FLNB Filamin-B yes no 2 7.0414E-07 121.02 By MS/MS 1 1.178 1.0292 NaN 1 Median NaN NaN NaN 0 0 Median 1.178 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5580100 2572400 3007600 0 0 0 5580100 2572400 3007600 0 0 0 0 0 0 0 0 0 0 0 0 14485 1664 15080 74049 75180 75180 1 IEYQFFEDR KVDALLSAQPKGDPRIEYQFFEDRHSAIKL PKGDPRIEYQFFEDRHSAIKLRPKEGETYF R I E D R H 0 1 0 1 0 1 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 9 0 1245.5666 Q9NYU2 Q9NYU2 964 972 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.00023693 140.5 By MS/MS By MS/MS 2 2 1.3474 1.2243 32.775 4 Median 1.0204 0.98581 2.2307 2 0 Median 1.9563 1.6918 17.338 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27917000 12699000 15218000 22974000 10866000 12108000 4942900 1832800 3110100 0 0 0 0 0 0 0 0 0 0 0 0 14486 4179 15081 74050;74051;74052;74053 75181;75182;75183 75182 3 IEYVDETGR TQDFKEKDGYKPDVKIEYVDETGRKLTPKE YKPDVKIEYVDETGRKLTPKEAFRQLSHRF K I E G R K 0 1 0 1 0 0 2 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 9 0 1080.5088 O43290 O43290 710 718 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.0041245 78.334 By MS/MS By MS/MS 1 1 0.8594 0.7322 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8594 0.7322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1555800 792800 762990 0 0 0 0 0 0 0 0 0 1555800 792800 762990 0 0 0 0 0 0 14487 1563 15082 74054;74055 75184;75185 75185 2 IEYVDETGRK TQDFKEKDGYKPDVKIEYVDETGRKLTPKE KPDVKIEYVDETGRKLTPKEAFRQLSHRFH K I E R K L 0 1 0 1 0 0 2 1 0 1 0 1 0 0 0 0 1 0 1 1 0 0 10 1 1208.6037 O43290 O43290 710 719 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.023372 23.376 By MS/MS By matching 1 1 0.95409 0.99944 0.13228 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87611 1.0004 NaN 1 0 Median 1.039 0.9985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1510900 774920 735940 0 0 0 0 0 0 866410 484250 382170 644450 290670 353770 0 0 0 0 0 0 14488 1563 15083 74056;74057 75186 75186 1 IEYVTVTPEGFR PGKFLLGYQPRGKPRIEYVTVTPEGFRYRG KPRIEYVTVTPEGFRYRGQIFPTVNGLFRW R I E F R Y 0 1 0 0 0 0 2 1 0 1 0 0 0 1 1 0 2 0 1 2 0 0 12 0 1409.7191 Q7KZ85 Q7KZ85 1484 1495 SUPT6H Transcription elongation factor SPT6 yes yes 2 2.0349E-10 134.59 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 1.1428 1.07 14.775 8 Median 1.1683 1.104 NaN 1 0 Median 1.3955 1.1874 NaN 1 0 Median 1.1178 1.2184 NaN 1 1 Median 1.1755 1.0371 NaN 1 0 Median 0.91941 0.94922 1.2941 2 2 Median 1.1978 0.99976 29.592 2 0 Median 45863000 21584000 24279000 6266900 2416800 3850100 3561800 1562500 1999300 17773000 8196400 9576900 986690 420640 566060 16677000 8654000 8023100 597250 333880 263360 14489 3213 15084 74058;74059;74060;74061;74062;74063;74064;74065 75187;75188;75189;75190;75191 75189 4 IFALLAGKPVWQLSEK HQLQADSFIQDERLRIFALLAGKPVWQLSE FALLAGKPVWQLSEKKQINVCSQLDWKRSL R I F E K K 2 0 0 0 0 1 1 1 0 1 3 2 0 1 1 1 0 1 0 1 0 0 16 1 1799.0345 P52948;H7C3P6;H0YDF4 P52948 1398 1413 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 0.00065215 61.435 By matching By MS/MS By matching By matching By matching 1 4 2 1 1 0.91194 1.0048 14.569 9 Median NaN NaN NaN 0 0 Median 1.0419 1.0048 NaN 1 0 Median 0.86891 0.991 11.188 4 0 Median 1.2496 1.1903 4.3596 2 0 Median 0.75957 0.84943 NaN 1 0 Median 0.91194 0.81277 NaN 1 0 Median 14070000 7304600 6765400 0 0 0 524550 213940 310610 12215000 6360300 5854600 284800 127580 157230 737930 465330 272600 307870 137480 170390 14490 2462 15085 74066;74067;74068;74069;74070;74071;74072;74073;74074 75192;75193;75194;75195 75195 4 IFANTESYLK VGKELYEKKDAEMDRIFANTESYLKRRQKT AEMDRIFANTESYLKRRQKTHVPMLQVWTA R I F L K R 1 0 1 0 0 0 1 0 0 1 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1184.6077 Q09161 Q09161 195 204 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.0024648 76.221 By MS/MS By MS/MS By matching 1 3 2 1.0683 1.1767 21.301 5 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1561 1.1767 5.2648 3 0 Plateau 0.91436 0.77982 15.105 2 0 Median 32138000 14732000 17406000 0 0 0 0 0 0 0 0 0 0 0 0 27322000 12520000 14802000 4816200 2212100 2604100 14491 2747 15086 74075;74076;74077;74078;74079;74080 75196;75197 75196 2 IFAPNHVVAK ______________________________ ______________________________ R I F A K S 2 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1094.6237 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 3 12 RPL18A 60S ribosomal protein L18a yes no 2 0.00037324 92.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 1 4 4 1.105 0.98317 16.389 19 Median 1.1042 0.98317 22.37 5 0 Median 1.0759 0.8915 6.9603 4 0 Median 0.86675 0.81286 NaN 1 0 Median 1.0964 0.90897 NaN 1 0 Median 1.0933 1.19 9.648 4 0 Median 1.1959 0.98376 7.2104 4 0 Median 217810000 108550000 109260000 92623000 47604000 45020000 13073000 6252300 6820600 30945000 16090000 14855000 6217000 2988900 3228200 65585000 31193000 34393000 9364400 4420300 4944200 14492 1433 15087 74081;74082;74083;74084;74085;74086;74087;74088;74089;74090;74091;74092;74093;74094;74095;74096;74097;74098;74099 75198;75199;75200;75201;75202;75203;75204;75205;75206;75207;75208;75209;75210;75211 75211 14 IFAQDGEGQR EFTVDPKDAGKAPLKIFAQDGEGQRIDIQM KAPLKIFAQDGEGQRIDIQMKNRMDGTYAC K I F Q R I 1 1 0 1 0 2 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 10 0 1119.5309 O75369;E7EN95 O75369 682 691 FLNB Filamin-B yes no 2 0.0007201 103.83 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1417 1.0243 17.366 6 Median 1.2399 1.2401 20.439 2 0 Median 1.1254 0.9624 5.7781 3 0 Median NaN NaN NaN 0 0 Median 1.3416 1.1646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21681000 9709100 11972000 3818100 1836100 1982000 17445000 7691100 9754300 0 0 0 417750 181920 235820 0 0 0 0 0 0 14493 1664 15088 74100;74101;74102;74103;74104;74105;74106 75212;75213;75214;75215;75216;75217;75218;75219;75220 75216 9 IFAQYLVPHNLETEER IYYQNSIDDKLLVEKIFAQYLVPHNLETEE FAQYLVPHNLETEERMKCLYYLYASLDPNA K I F E R M 1 1 1 0 0 1 3 0 1 1 2 0 0 1 1 0 1 0 1 1 0 0 16 0 1957.9898 Q29RF7;H0Y9L9 Q29RF7 468 483 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2;3 1.213E-09 99.752 By MS/MS By MS/MS 2 2 0.77306 0.84964 88.493 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80867 0.88906 6.414 2 0 Median 0.20195 0.19237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41559000 22764000 18796000 0 0 0 0 0 0 40647000 22025000 18622000 912320 738170 174150 0 0 0 0 0 0 14494 3003 15089 74107;74108;74109;74110 75221;75222;75223;75224;75225 75224 5 IFAQYMVPHNLETTER IYYQNSIDDRLLVERIFAQYMVPHNLETTE FAQYMVPHNLETTERMKCLYYLYATLDLNA R I F E R M 1 1 1 0 0 1 2 0 1 1 1 0 1 1 1 0 2 0 1 1 0 0 16 0 1947.9513 Q9NTI5 Q9NTI5 458 473 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.00024367 53.777 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.93128 0.92794 72.671 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77755 0.86842 9.3754 2 1 Median 1.4097 1.3404 54.804 2 0 Median 1.4959 1.5425 67.301 2 0 Median 0.23846 0.25909 NaN 1 0 Median 61471000 32847000 28624000 0 0 0 0 0 0 43276000 24102000 19174000 1429500 592880 836620 16398000 7860100 8538200 366610 292050 74564 14495 4107 15090;15091 74111;74112;74113;74114;74115;74116;74117 75226;75227;75228;75229 75228 1876 4 IFASIAPSIYGHEDIKR KMITSLSKDQQIGEKIFASIAPSIYGHEDI ASIAPSIYGHEDIKRGLALALFGGEPKNPG K I F K R G 2 1 0 1 0 0 1 1 1 4 0 1 0 1 1 2 0 0 1 0 0 0 17 1 1916.0156 P49736 P49736 477 493 MCM2 DNA replication licensing factor MCM2 yes yes 2;3;4 6.0156E-19 128.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 6 2 2 0.70233 0.73773 20.87 16 Median 0.76952 0.80268 7.9579 4 0 Median 1.0216 0.95332 12.09 2 0 Median 0.64259 0.72792 21.202 6 2 Median 0.68948 0.6626 39.103 2 0 Median 0.60355 0.66544 2.3721 2 0 Median NaN NaN NaN 0 0 Median 216830000 124070000 92766000 104700000 57789000 46915000 15870000 7192300 8678100 86420000 53589000 32831000 2517900 1349000 1168900 7319500 4146400 3173100 0 0 0 14496 2393 15092 74118;74119;74120;74121;74122;74123;74124;74125;74126;74127;74128;74129;74130;74131;74132;74133 75230;75231;75232;75233;75234;75235;75236;75237;75238;75239;75240;75241;75242;75243;75244 75237 14 IFAVAATYPYQVVR QLSTVEYISVAALSKIFAVAATYPYQVVRA KIFAVAATYPYQVVRARLQDQHMFYSGVID K I F V R A 3 1 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 2 3 0 0 14 0 1596.8664 A0A3B3IRK5;Q9H2D1 A0A3B3IRK5 185 198 SLC25A32 Mitochondrial folate transporter/carrier yes no 2 0.00099478 52.79 By MS/MS 1 1.0303 0.98657 NaN 1 Median 1.0303 0.98657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3345900 1750500 1595400 3345900 1750500 1595400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14497 411 15093 74134 75245 75245 1 IFDAVGFTFPNR KAVKAGDIDAKTRRRIFDAVGFTFPNRLLT RRRIFDAVGFTFPNRLLTTKEAPDGCPDHV R I F N R L 1 1 1 1 0 0 0 1 0 1 0 0 0 3 1 0 1 0 0 1 0 0 12 0 1382.6983 Q9UBB6;C9J5H8 Q9UBB6 76 87 NCDN Neurochondrin yes no 2 0.0012256 55.549 By MS/MS By matching 2 1 1.1133 1.13 59.842 3 Median 0.66944 0.67319 73.304 2 0 Median 1.2897 1.13 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2884000 1406700 1477300 2175400 1114300 1061000 708660 292360 416300 0 0 0 0 0 0 0 0 0 0 0 0 14498 4234 15094 74135;74136;74137 75246 75246 1 IFDDAYK MIGFSETAKCQAMKKIFDDAYKSQLSCVVV AKCQAMKKIFDDAYKSQLSCVVVDDIERLL K I F Y K S 1 0 0 2 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 870.41233 I3L0N3;P46459;I3L2G1 I3L0N3 583 589 NSF Vesicle-fusing ATPase yes no 2 0.031276 49.358 By matching By MS/MS 1 1 1.051 0.96513 47.986 2 Median 0.72162 0.68742 NaN 1 0 Median 1.5308 1.355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6037700 2908300 3129400 4083100 2129900 1953200 1954600 778360 1176200 0 0 0 0 0 0 0 0 0 0 0 0 14499 1272 15095 74138;74139 75247 75247 1 IFDEILVNAADNK GINYREVTFVPGLYKIFDEILVNAADNKQR YKIFDEILVNAADNKQRDPKMSCIRVTIDP K I F N K Q 2 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1460.7511 P11388;J3KTB7;Q02880;E9PCY5 P11388 84 96 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2;3 5.6706E-07 122.42 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 4 5 1 1.1739 1.0969 22.899 16 Median 1.1692 1.116 NaN 1 0 Median 1.7204 1.5422 42.557 3 0 Plateau 1.0388 1.1472 14.814 2 0 Median 1.4633 1.2895 21.127 4 0 Median 0.95854 0.94616 17.617 5 1 Median 1.2019 1.0236 NaN 1 0 Median 102520000 48940000 53580000 2789500 1564400 1225000 863290 312030 551270 44027000 21397000 22629000 2435800 924260 1511500 51713000 24444000 27268000 691990 297940 394050 14500 1963;2704 15096 74140;74141;74142;74143;74144;74145;74146;74147;74148;74149;74150;74151;74152;74153;74154;74155 75248;75249;75250;75251;75252;75253;75254;75255;75256;75257;75258;75259 75249 12 IFDEILVNAADNKQR GINYREVTFVPGLYKIFDEILVNAADNKQR IFDEILVNAADNKQRDPKMSCIRVTIDPEN K I F Q R D 2 1 2 2 0 1 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 15 1 1744.9108 P11388;J3KTB7;Q02880;E9PCY5 P11388 84 98 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 3 0.00011059 55.841 By MS/MS 1 1.0351 1.1728 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0351 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median 6989200 2960100 4029100 0 0 0 0 0 0 0 0 0 0 0 0 6989200 2960100 4029100 0 0 0 14501 1963;2704 15097 74156 75260 75260 1 IFDIDEAEEGVK LNFFNQKKKKKKTKKIFDIDEAEEGVKDLK TKKIFDIDEAEEGVKDLKIESDVQEPTEPE K I F V K D 1 0 0 2 0 0 3 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 12 0 1363.6507 P20042 P20042 88 99 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 3.2326E-06 109.42 By matching By matching By MS/MS 1 1 2 1.1994 1.1363 23.481 4 Median 0.83872 0.80608 NaN 1 0 Median 1.1554 1.01 NaN 1 0 Median 1.2896 1.3096 3.4311 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49034000 20563000 28471000 2628500 1398300 1230200 1084200 457930 626250 45321000 18706000 26615000 0 0 0 0 0 0 0 0 0 14502 2072 15098 74157;74158;74159;74160 75261;75262;75263 75262 3 IFDIDEAEEGVKDLK LNFFNQKKKKKKTKKIFDIDEAEEGVKDLK IFDIDEAEEGVKDLKIESDVQEPTEPEDDL K I F L K I 1 0 0 3 0 0 3 1 0 2 1 2 0 1 0 0 0 0 0 1 0 0 15 1 1719.8567 P20042 P20042 88 102 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 0.0026303 32.341 By matching By MS/MS 1 2 1.1979 1.1378 10.15 3 Median 1.0278 0.99479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2778 1.1752 4.5732 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31997000 14510000 17487000 1462500 596410 866070 0 0 0 0 0 0 30535000 13914000 16621000 0 0 0 0 0 0 14503 2072 15099 74161;74162;74163 75264 75264 1 IFDSEEILAGYK VLMPNVGEIVGGSMRIFDSEEILAGYKREG SMRIFDSEEILAGYKREGIDPTPYYWYTDQ R I F Y K R 1 0 0 1 0 0 2 1 0 2 1 1 0 1 0 1 0 0 1 0 0 0 12 0 1383.6922 O43776 O43776 479 490 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 5.6521E-06 122.26 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2155 1.0727 9.6683 4 Median 1.1714 1.0967 NaN 1 1 Median 1.2613 1.0491 NaN 1 0 Median 1.2702 1.2298 NaN 1 0 Median 1.1561 0.97644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104650000 45129000 59522000 15757000 7176600 8580100 42001000 19323000 22678000 22681000 8035400 14645000 24213000 10594000 13619000 0 0 0 0 0 0 14504 1589 15100 74164;74165;74166;74167 75265;75266;75267;75268;75269 75269 5 IFDSEEILAGYKR VLMPNVGEIVGGSMRIFDSEEILAGYKREG MRIFDSEEILAGYKREGIDPTPYYWYTDQR R I F K R E 1 1 0 1 0 0 2 1 0 2 1 1 0 1 0 1 0 0 1 0 0 0 13 1 1539.7933 O43776 O43776 479 491 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2;3 4.9173E-07 110.14 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.2933 1.2589 12.345 7 Median 1.3511 1.3544 10.34 2 0 Median 1.2259 1.132 7.0511 2 0 Median 1.2896 1.4444 8.865 2 0 Median 1.3261 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57515000 24059000 33456000 35157000 13989000 21168000 2091200 910580 1180600 19531000 8828800 10702000 734710 330320 404390 0 0 0 0 0 0 14505 1589 15101 74168;74169;74170;74171;74172;74173;74174 75270;75271;75272;75273;75274;75275;75276 75276 7 IFDSPEELPKER REMKDFQFRALKKVRIFDSPEELPKERSSL KVRIFDSPEELPKERSSLLAVSNKYGLVFA R I F E R S 0 1 0 1 0 0 3 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 12 1 1458.7355 A0A494C1F2;P35658;A0A494BZU9 A0A494C1F2 27 38 NUP214 Nuclear pore complex protein Nup214 yes no 3 0.0004706 52.555 By matching By matching By MS/MS 1 1 1 1.002 1.0062 11.111 3 Median 0.94239 0.97896 NaN 1 0 Median 1.0628 1.0062 NaN 1 0 Median 1.002 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11793000 5934700 5858100 2800500 1669900 1130700 390220 176190 214030 8602100 4088700 4513400 0 0 0 0 0 0 0 0 0 14506 467 15102 74175;74176;74177 75277 75277 1 IFDTYVGAQR KWLLRQMTGKCELQRIFDTYVGAQRTHRIE CELQRIFDTYVGAQRTHRIENSLTYSKNKV R I F Q R T 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 1 0 0 10 0 1168.5877 V9GY58;D6RBS5;Q8IZ81 V9GY58 34 43 ELMOD2 ELMO domain-containing protein 2 yes no 2 4.6004E-07 160.75 By MS/MS By MS/MS 1 1 1.1628 1.0257 17.177 2 Median 0.97091 0.90843 NaN 1 0 Median 1.3926 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30406000 14997000 15408000 20964000 11137000 9827400 9441500 3860400 5581100 0 0 0 0 0 0 0 0 0 0 0 0 14507 817 15103 74178;74179 75278;75279;75280 75278 3 IFEGTNDILR EPGVERVLRDLRIFRIFEGTNDILRLFVAL LRIFRIFEGTNDILRLFVALQGCMDKGKEL R I F L R L 0 1 1 1 0 0 1 1 0 2 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1176.6139 P49748;G3V1M7;J3QRJ8;J3KSR4 P49748 460 469 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.031368 66.692 By matching By MS/MS By matching 1 1 1 1.0053 0.95069 18.876 3 Median 1.0053 0.95069 NaN 1 0 Median 1.4253 1.2343 NaN 1 0 Median 0.82972 0.85539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30565000 13930000 16635000 19088000 8461500 10626000 4851100 1949400 2901700 6626300 3519200 3107000 0 0 0 0 0 0 0 0 0 14508 2394 15104 74180;74181;74182 75281 75281 0 IFELGLKK LMEYYCSKDKSVAFKIFELGLKKYGDIPEY DKSVAFKIFELGLKKYGDIPEYVLAYIDYL K I F K K Y 0 0 0 0 0 0 1 1 0 1 2 2 0 1 0 0 0 0 0 0 0 0 8 1 946.58515 Q12996;E9PLP8 Q12996 432 439 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.0069102 79.116 By MS/MS By matching 1 1 1.1969 1.248 6.7438 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0691 1.1899 NaN 1 0 Median 1.3399 1.309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13267000 6310700 6956300 0 0 0 0 0 0 12536000 5978900 6557000 731020 331740 399280 0 0 0 0 0 0 14509 2777 15105 74183;74184 75282 75282 1 IFELTELR FRNNLKTLLEILDGKIFELTELRDNLAKLL LEILDGKIFELTELRDNLAKLLECS_____ K I F L R D 0 1 0 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 8 0 1019.5651 Q86YM7;Q86YM6 Q86YM7 337 344 HOMER1 Homer protein homolog 1 yes no 2 0.010382 58.981 By matching By MS/MS By matching 2 1 1 1.3713 0.98734 24.918 4 Linear NaN NaN NaN 0 0 Median 0.95728 0.8383 23.67 2 0 Median 1.2016 1.304 NaN 1 0 Median 1.1927 0.98366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3870700 2014800 1856000 0 0 0 479690 231180 248510 2902300 1524500 1377800 488720 259090 229630 0 0 0 0 0 0 14510 3307 15106 74185;74186;74187;74188 75283;75284 75284 2 IFEPILGEGR TQYYLEQQLAKPLLRIFEPILGEGRAEAVL KPLLRIFEPILGEGRAEAVLLRGDHTRCKT R I F G R A 0 1 0 0 0 0 2 2 0 2 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1129.6132 M0R2B7;P28340;A0A087WYJ2;M0QXE6;M0QXQ2;M0R3H8 M0R2B7 995 1004 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.017044 38.086 By matching By MS/MS By matching 1 1 1 0.74528 0.74316 12.302 3 Median NaN NaN NaN 0 0 Median 0.91188 0.78054 NaN 1 0 Median 0.67625 0.74316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74528 0.61811 NaN 1 0 Median 5721400 3505000 2216300 0 0 0 2165500 1163500 1002000 3515200 2325100 1190100 0 0 0 0 0 0 40617 16365 24252 14511 1436 15107 74189;74190;74191 75285 75285 1 IFEPPPPK IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG PPQQQQRIFEPPPPKKQNGAIGRKVVVSTN R I F P K K 0 0 0 0 0 0 1 0 0 1 0 1 0 1 4 0 0 0 0 0 0 0 8 0 923.51165 O43143 O43143 400 407 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0069954 68.915 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 0.55941 0.49024 5.4841 6 Median 0.50754 0.49021 NaN 1 0 Median 0.5606 0.49028 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55822 0.48432 NaN 1 0 Median 0.52849 0.54558 NaN 1 0 Median 0.60025 0.49969 7.5312 2 0 Median 18192000 11240000 6951700 3271900 1980500 1291400 4658700 2615500 2043200 0 0 0 1923000 1158800 764210 5151800 3466900 1684800 3186700 2018600 1168100 14512 1553 15108 74192;74193;74194;74195;74196;74197 75286;75287;75288;75289;75290;75291;75292 75290 7 IFESVTLPSNR LLRAPRFTPSEAHSRIFESVTLPSNRTSAG AHSRIFESVTLPSNRTSAGTSSSGVSNRKR R I F N R T 0 1 1 0 0 0 1 0 0 1 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1261.6667 Q03164;E9PR05;A0A3B3ITZ1 Q03164 711 721 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.00015693 114.84 By MS/MS 1 0.49978 0.52537 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49978 0.52537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17866000 11470000 6395400 0 0 0 0 0 0 17866000 11470000 6395400 0 0 0 0 0 0 0 0 0 14513 2708 15109 74198 75293 75293 1 IFEYETQR HGPVVGSTRRLYEKKIFEYETQRRRLSPPS RRLYEKKIFEYETQRRRLSPPSSSAASSYS K I F Q R R 0 1 0 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 8 0 1084.5189 P50402 P50402 38 45 EMD Emerin yes yes 2 0.0023085 117.16 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.2161 1.0825 12.924 6 Median 1.098 1.039 NaN 1 0 Median 1.1235 0.93964 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.359 1.1353 NaN 1 0 Median 1.2232 1.2261 17.506 2 0 Median 1.3163 1.0816 NaN 1 0 Median 29057000 12536000 16521000 5013900 2322800 2691000 3345900 1441800 1904100 0 0 0 1559900 675410 884500 16036000 6796400 9240000 3100600 1299200 1801400 14514 2412 15110 74199;74200;74201;74202;74203;74204 75294;75295;75296;75297;75298 75296 5 IFEYETQRR HGPVVGSTRRLYEKKIFEYETQRRRLSPPS RLYEKKIFEYETQRRRLSPPSSSAASSYSF K I F R R R 0 2 0 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 9 1 1240.62 P50402 P50402 38 46 EMD Emerin yes yes 3 0.026881 23.071 By matching By matching By MS/MS 1 1 1 1.0486 1.1192 29.109 3 Median NaN NaN NaN 0 0 Median 1.29 1.2423 NaN 1 0 Median 0.6044 0.71807 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0486 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median 5599900 3009300 2590500 0 0 0 1845200 922140 923100 1237700 801810 435870 0 0 0 2516900 1285400 1231600 0 0 0 14515 2412 15111 74205;74206;74207 75299;75300 75300 2 IFFAGDTIPK RCVYKPMQPGPHVVKIFFAGDTIPKSPFVV PHVVKIFFAGDTIPKSPFVVQVGEACNPNA K I F P K S 1 0 0 1 0 0 0 1 0 2 0 1 0 2 1 0 1 0 0 0 0 0 10 0 1107.5964 O75369;E7EN95 O75369 430 439 FLNB Filamin-B yes no 2 0.0052688 58.981 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 1 1 1.1816 1.0775 16.389 7 Median 1.0537 1.0358 19.152 2 1 Median 1.2056 1.0668 8.6836 2 0 Median 0.74577 0.82459 NaN 1 0 Median 1.1988 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6424 1.3335 NaN 1 0 Median 88564000 46570000 41994000 52304000 25455000 26849000 24882000 15171000 9710800 9669900 5250900 4419000 303230 148260 154970 0 0 0 1405100 544300 860810 14516 1664 15112 74208;74209;74210;74211;74212;74213;74214;74215 75301;75302;75303;75304;75305;75306;75307 75306 7 IFFAGTETATK IMTQYGRVIRQPVGRIFFAGTETATKWSGY PVGRIFFAGTETATKWSGYMEGAVEAGERA R I F T K W 2 0 0 0 0 0 1 1 0 1 0 1 0 2 0 0 3 0 0 0 0 0 11 0 1184.6077 P21397 P21397 430 440 MAOA Amine oxidase [flavin-containing] A yes yes 2 0.055791 43.77 By MS/MS 1 1.2147 1.1392 NaN 1 Median 1.2147 1.1392 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12856000 6001800 6854300 12856000 6001800 6854300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14517 2089 15113 74216 75308 75308 1 IFFIDPNERPVTLYHLLK EITETGWGEFEIIIKIFFIDPNERPVTLYH IDPNERPVTLYHLLKLFQSDTNAMLGKKTV K I F L K L 0 1 1 1 0 0 1 0 1 2 3 1 0 2 2 0 1 0 1 1 0 0 18 1 2214.2201 O95619;F8W1B9;F8VTR4 O95619 102 119 YEATS4 YEATS domain-containing protein 4 yes no 3 0.00057053 34.954 By MS/MS 1 0.74959 0.66575 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74959 0.66575 NaN 1 0 Median 2376400 1236300 1140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2376400 1236300 1140000 14518 1783 15114 74217 75309;75310 75309 2 IFFSDIHFGNIQQINDDGSR AFDYRAGTSPGTPNRIFFSDIHFGNIQQIN IHFGNIQQINDDGSRRITIVENVGSVEGLA R I F S R R 0 1 2 3 0 2 0 2 1 4 0 0 0 3 0 2 0 0 0 0 0 0 20 0 2322.1029 Q07954 Q07954 2255 2274 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 1.447E-07 56.936 By MS/MS 1 0.72195 0.72856 NaN 1 Median 0.72195 0.72856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3453900 1915800 1538200 3453900 1915800 1538200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14519 2733 15115 74218 75311 75311 1 IFGGFLMR SLEICHPQERNIFNRIFGGFLMRKAYELAW ERNIFNRIFGGFLMRKAYELAWATACSFGG R I F M R K 0 1 0 0 0 0 0 2 0 1 1 0 1 2 0 0 0 0 0 0 0 0 8 0 939.50004 Q9Y305;H7C5Q2 Q9Y305 310 317 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.018086 48.174 By MS/MS By matching By MS/MS By matching By matching 4 2 1 1 1 1.1328 1.1412 24.968 9 Median 1.0364 0.98975 14.918 4 0 Median 1.6018 1.3636 18.765 2 0 Median 0.92491 0.90967 NaN 1 0 Median 1.7603 1.527 NaN 1 0 Median 1.5566 1.5656 NaN 1 0 Median NaN NaN NaN 0 0 Median 48501000 23322000 25179000 17543000 8477400 9065800 9841800 4018300 5823500 14532000 8267900 6264400 4597800 1808500 2789300 1986100 749620 1236400 0 0 0 14520 4400 15116 74219;74220;74221;74222;74223;74224;74225;74226;74227 75312;75313;75314 75314 3 IFGGLDMLAEK PKLPKLKKLELSENRIFGGLDMLAEKLPNL SENRIFGGLDMLAEKLPNLTHLNLSGNKLK R I F E K L 1 0 0 1 0 0 1 2 0 1 2 1 1 1 0 0 0 0 0 0 0 0 11 0 1192.6162 Q92688 Q92688 76 86 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2 0.00041805 70.1 By MS/MS By matching By MS/MS By matching By matching 3 1 3 2 2 1.1362 1.0011 8.8762 11 Median 1.0231 0.92791 15.471 3 0 Median 1.0446 0.91042 NaN 1 0 Median 1.0682 1.0014 8.8864 3 0 Median 1.1684 0.97612 4.7418 2 0 Median NaN NaN NaN 0 0 Median 1.2675 1.032 4.3 2 0 Median 101010000 47494000 53519000 55673000 26470000 29203000 133070 47328 85745 39067000 18106000 20961000 2873600 1316300 1557300 0 0 0 3266500 1553900 1712600 14521 3549 15117;15118 74228;74229;74230;74231;74232;74233;74234;74235;74236;74237;74238 75315;75316;75317 75315 1767 3 IFGGVLESDAR LRDSMLKYPDSHQPRIFGGVLESDARSESP HQPRIFGGVLESDARSESPQPAPDWGSQRP R I F A R S 1 1 0 1 0 0 1 2 0 1 1 0 0 1 0 1 0 0 0 1 0 0 11 0 1162.5982 O00165;E9PIQ7 O00165 140 150 HAX1 HCLS1-associated protein X-1 yes no 2 0.0054074 46.158 By matching By MS/MS By matching 1 1 1 1.2122 1.1527 16.754 3 Median 1.2122 1.1527 NaN 1 0 Median 1.5064 1.2682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0777 0.91547 NaN 1 0 Median 7716100 2742200 4973900 4412600 1469000 2943700 2019900 726830 1293100 0 0 0 0 0 0 0 0 0 1283500 546380 737130 14522 1444 15119 74239;74240;74241 75318 75318 1 IFGLLMGTLQK QDQNMDEKGKQRNRRIFGLLMGTLQKFKQE RNRRIFGLLMGTLQKFKQESTVATERQKRR R I F Q K F 0 0 0 0 0 1 0 2 0 1 3 1 1 1 0 0 1 0 0 0 0 0 11 0 1219.6999 Q9H307 Q9H307 145 155 PNN Pinin yes yes 2 0.0004849 68.735 By matching By matching By MS/MS By MS/MS 1 1 7 5 1.0431 0.95124 32.403 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82177 0.85181 NaN 1 0 Median 1.2756 1.0785 NaN 1 0 Median 1.0192 1.0106 45.01 7 0 Median 1.0676 0.8954 15.27 5 0 Median 69454000 32042000 37411000 0 0 0 0 0 0 872110 522980 349130 549370 220390 328980 45855000 21531000 24325000 22177000 9768400 12409000 14523 3950 15120;15121 74242;74243;74244;74245;74246;74247;74248;74249;74250;74251;74252;74253;74254;74255 75319;75320;75321 75320 1857 3 IFGPIWNR KEMVQNLMVLRFANRIFGPIWNRDNIACVI VLRFANRIFGPIWNRDNIACVILTFKEPFG R I F N R D 0 1 1 0 0 0 0 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 8 0 1001.5447 P11413;E7EUI8;E9PD92;E7EM57 P11413 220 227 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.010267 59.205 By MS/MS By matching 3 1 1.0136 0.99332 14.292 4 Median 1.0464 1.044 6.1823 3 0 Median 0.89574 0.77653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7337300 3546100 3791200 5652800 2640700 3012000 1684500 905330 779190 0 0 0 0 0 0 0 0 0 0 0 0 14524 1964 15122 74256;74257;74258;74259 75322;75323;75324 75323 3 IFGSNKWTTEQQQR FLCLADYLVPILAPRIFGSNKWTTEQQQRF RIFGSNKWTTEQQQRFHEICSNLVKTRRRA R I F Q R F 0 1 1 0 0 3 1 1 0 1 0 1 0 1 0 1 2 1 0 0 0 0 14 1 1721.8485 H3BN98;H3BPJ2;Q15041 H3BN98 91 104 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 2;3 0.0016502 68.551 By MS/MS By MS/MS 1 1 1.1356 1.0626 55.668 2 Median 1.5873 1.5752 NaN 1 0 Median 0.8125 0.71685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6481000 2315500 4165500 4327300 1273100 3054200 2153700 1042400 1111300 0 0 0 0 0 0 0 0 0 0 0 0 14525 1213 15123 74260;74261 75325;75326 75326 2 IFGTDSQYNAYNEK NFIGNYASTFTWWDRIFGTDSQYNAYNEKR RIFGTDSQYNAYNEKRKKFEKKTE______ R I F E K R 1 0 2 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 2 0 0 0 14 0 1648.7369 Q15800 Q15800 271 284 MSMO1 Methylsterol monooxygenase 1 yes yes 2 7.6107E-07 138.25 By MS/MS By MS/MS 1 1 1.1573 1.0899 24.581 2 Median 0.91367 0.91603 NaN 1 0 Median 1.4658 1.2968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24988000 11260000 13728000 13871000 6775200 7096000 11117000 4484800 6632000 0 0 0 0 0 0 0 0 0 0 0 0 14526 2972 15124 74262;74263 75327;75328;75329;75330 75327 4 IFGVTTLDIVR TAEVFKKHGVYNPNKIFGVTTLDIVRANTF NPNKIFGVTTLDIVRANTFVAELKGLDPAR K I F V R A 0 1 0 1 0 0 0 1 0 2 1 0 0 1 0 0 2 0 0 2 0 0 11 0 1232.7129 P40926;G3XAL0 P40926 166 176 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.00013586 118.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 3 2 1.3615 1.1125 15.236 11 Median 1.1382 1.1118 2.7646 3 0 Median 1.2419 1.0345 21.33 2 0 Median 1.0995 1.0685 NaN 1 0 Median 1.522 1.2947 11.447 3 0 Median NaN NaN NaN 0 0 Median 1.6882 1.4024 16.446 2 0 Median 1286600000 544230000 742420000 215230000 100180000 115040000 1038800000 429360000 609470000 24955000 11812000 13143000 5431800 2095700 3336100 0 0 0 2207100 783070 1424000 14527 2292 15125 74264;74265;74266;74267;74268;74269;74270;74271;74272;74273;74274 75331;75332;75333;75334;75335;75336;75337;75338;75339;75340;75341;75342;75343;75344 75332 14 IFHAPNASAPSSSLSTFK CTFNADKKTLETHIKIFHAPNASAPSSSLS APNASAPSSSLSTFKDKNKNDGLKPKQADS K I F F K D 3 0 1 0 0 0 0 0 1 1 1 1 0 2 2 5 1 0 0 0 0 0 18 0 1860.937 Q9H2P0;A0A2R8Y469 Q9H2P0 127 144 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.00010751 38.824 By MS/MS By MS/MS 3 2 0.9257 0.97985 19.848 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9257 0.98818 22.818 3 0 Plateau NaN NaN NaN 0 0 Median 0.93912 0.97273 19.005 2 0 Median NaN NaN NaN 0 0 Median 46069000 23886000 22183000 0 0 0 0 0 0 26684000 13540000 13144000 0 0 0 19385000 10346000 9038900 0 0 0 14528 3946 15126 74275;74276;74277;74278;74279 75345;75346 75346 2 IFHELTQTDK ITAANNLVAAAIDARIFHELTQTDKALFNR AIDARIFHELTQTDKALFNRLVPSVNGVRR R I F D K A 0 0 0 1 0 1 1 0 1 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1230.6245 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 464 473 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 1.0464E-05 152.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 2 1.0261 0.98857 13.192 14 Median 1.0091 0.97287 7.6329 3 0 Median 1.155 0.98857 12.464 4 0 Median 0.92224 0.99383 10.047 2 0 Median 1.3961 1.2002 16.364 3 0 Plateau NaN NaN NaN 0 0 Median 1.0397 0.85745 21.894 2 2 Median 160960000 73704000 87257000 41003000 19521000 21483000 101640000 45387000 56250000 7316800 3779300 3537400 6593300 2881900 3711500 0 0 0 4410200 2134600 2275700 14529 1968 15127 74280;74281;74282;74283;74284;74285;74286;74287;74288;74289;74290;74291;74292;74293 75347;75348;75349;75350;75351;75352;75353;75354;75355;75356;75357;75358;75359;75360;75361;75362;75363;75364;75365;75366 75353 20 IFHINPR VLPCNLLRMIWNAQKIFHINPRLPSDLHPI RMIWNAQKIFHINPRLPSDLHPIKVVEGVK K I F P R L 0 1 1 0 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 7 0 895.50282 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 993 999 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.03575 72.021 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14530 486 15128 74294;74295 75367;75368 75368 2 IFHTVTTTDDPVIR RITTRSEKPLRSIKRIFHTVTTTDDPVIRK RIFHTVTTTDDPVIRKLAKTQGNVFATDAI R I F I R K 0 1 0 2 0 0 0 0 1 2 0 0 0 1 1 0 4 0 0 2 0 0 14 0 1613.8413 O15371;B0QYA5;B0QYA4 O15371 223 236 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2;3 4.5013E-08 104.52 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 0.92093 0.89054 15.374 10 Median 0.92093 0.86345 1.5334 2 1 Median 0.89325 0.77082 22.901 3 1 Median 0.93808 0.94243 5.174 2 0 Median 1.0853 0.91273 13.667 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 247140000 123140000 124000000 132530000 65541000 66993000 61043000 30823000 30219000 35478000 17789000 17690000 18090000 8988300 9101800 0 0 0 0 0 0 14531 1540 15129 74296;74297;74298;74299;74300;74301;74302;74303;74304;74305;74306 75369;75370;75371;75372;75373;75374;75375;75376;75377;75378;75379;75380;75381 75369 13 IFHTVTTTDDPVIRK RITTRSEKPLRSIKRIFHTVTTTDDPVIRK IFHTVTTTDDPVIRKLAKTQGNVFATDAIL R I F R K L 0 1 0 2 0 0 0 0 1 2 0 1 0 1 1 0 4 0 0 2 0 0 15 1 1741.9363 O15371;B0QYA5;B0QYA4 O15371 223 237 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2;3;4 3.4637E-06 85.837 By MS/MS By matching 3 2 0.90512 0.90777 38.105 5 Median 0.90512 0.90777 7.8203 3 0 Median 1.0734 0.98409 75.226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36618000 18352000 18266000 30570000 15830000 14740000 6048700 2522300 3526300 0 0 0 0 0 0 0 0 0 0 0 0 14532 1540 15130 74307;74308;74309;74310;74311 75382;75383;75384;75385;75386 75385 5 IFIAQPAWVLR GEAEGELAVGGVFLRIFIAQPAWVLRKPRE VFLRIFIAQPAWVLRKPREFLIALLEKLTE R I F L R K 2 1 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 1 0 1 0 0 11 0 1312.7656 O75165 O75165 1987 1997 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.00090339 61.999 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.96851 0.88622 16.02 4 Median 0.74053 0.74351 NaN 1 0 Median 1.0669 0.93578 NaN 1 0 Median 0.97376 1.0835 NaN 1 0 Median 0.96329 0.83929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3474300 1827000 1647300 1690700 952190 738480 564000 253940 310060 1016200 513590 502570 203520 107320 96195 0 0 0 0 0 0 14533 1653 15131 74312;74313;74314;74315 75387;75388;75389;75390;75391 75387 5 IFIGTFK QHIDYRMRCILQDGRIFIGTFKAFDKHMNL RCILQDGRIFIGTFKAFDKHMNLILCDCDE R I F F K A 0 0 0 0 0 0 0 1 0 2 0 1 0 2 0 0 1 0 0 0 0 0 7 0 824.47963 P14678;J3QLE5;P63162;J3KRY3;S4R3P3 P14678 26 32 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 0.0054115 97.071 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 3 5 6 3 1.2737 1.1538 11.673 26 Median 1.1464 1.0502 6.4598 4 0 Median 1.4129 1.1643 5.3179 5 0 Median 1.1088 1.0668 4.2122 3 0 Median 1.4248 1.1551 16.707 5 0 Median 1.2336 1.289 9.6223 6 0 Median 1.3125 1.0707 0.45639 3 0 Plateau 484030000 220070000 263960000 61304000 29502000 31803000 10428000 4327100 6101400 207560000 94236000 113330000 24379000 10040000 14339000 175810000 80074000 95737000 4548400 1891500 2656900 14534 2009 15132 74316;74317;74318;74319;74320;74321;74322;74323;74324;74325;74326;74327;74328;74329;74330;74331;74332;74333;74334;74335;74336;74337;74338;74339;74340;74341 75392;75393;75394;75395;75396;75397;75398;75399;75400;75401;75402;75403;75404;75405;75406;75407;75408;75409;75410;75411;75412;75413;75414;75415;75416;75417;75418;75419;75420;75421;75422;75423;75424 75395 33 IFIKPNAQKPLPQALSK FREKIDNSNTPFLPKIFIKPNAQKPLPQAL IKPNAQKPLPQALSKERRERPQDRPEDLDV K I F S K E 2 0 1 0 0 2 0 0 0 2 2 3 0 1 3 1 0 0 0 0 0 0 17 2 1892.1248 Q01780 Q01780 202 218 EXOSC10 Exosome component 10 yes yes 4 0.00016215 41.386 By MS/MS By matching By matching 1 1 1 0.64743 0.78977 16.07 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64743 0.78977 NaN 1 0 Median 0.88398 0.90526 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60486 0.6572 NaN 1 0 Median 24071000 13184000 10887000 0 0 0 0 0 0 19776000 11052000 8724200 3926700 1906500 2020200 0 0 0 368570 225810 142760 14535 2691 15133 74342;74343;74344 75425;75426 75425 2 IFILGPSHHVPLSR AAHAYKQVDPSITRRIFILGPSHHVPLSRC RIFILGPSHHVPLSRCALSSVDIYRTPLYD R I F S R C 0 1 0 0 0 0 0 1 2 2 2 0 0 1 2 2 0 0 0 1 0 0 14 0 1571.8936 Q9Y316 Q9Y316 74 87 MEMO1 Protein MEMO1 yes yes 3 0.037713 25.718 By MS/MS 1 0.53621 0.4494 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53621 0.4494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 953170 680460 272710 0 0 0 0 0 0 0 0 0 953170 680460 272710 0 0 0 0 0 0 14536 4403 15134 74345 75427 75427 1 IFINLPR KFQGPDNGQGPKYVKIFINLPRSMDFEEAE GQGPKYVKIFINLPRSMDFEEAERSEPTQA K I F P R S 0 1 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 7 0 871.52797 O43396;K7ER96 O43396 196 202 TXNL1 Thioredoxin-like protein 1 yes no 2 0.021008 59.641 By MS/MS 1 1.0826 1.0129 NaN 1 Median 1.0826 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21499000 9597200 11902000 21499000 9597200 11902000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14537 1570 15135 74346 75428;75429 75428 2 IFISNTFNPAK QEALKRPIKQKRKLRIFISNTFNPAKSDAE RKLRIFISNTFNPAKSDAEDGEGTVASWEL R I F A K S 1 0 2 0 0 0 0 0 0 2 0 1 0 2 1 1 1 0 0 0 0 0 11 0 1250.6659 Q96GM5 Q96GM5 184 194 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes yes 2 0.00017071 95.099 By MS/MS By MS/MS 1 2 0.92814 0.90006 37.825 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92814 0.90006 NaN 1 0 Median 0.84286 0.74771 51.304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19810000 10035000 9774600 0 0 0 0 0 0 16793000 8729400 8064100 3016500 1306000 1710500 0 0 0 0 0 0 14538 3659 15136 74347;74348;74349 75430;75431;75432;75433 75430 4 IFIYDGR DAISSVAASEKSTGKIFIYDGRGDNQPLHI ASEKSTGKIFIYDGRGDNQPLHIFDKLHTS K I F G R G 0 1 0 1 0 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 0 7 0 882.45995 Q96BP3;F5H7P7;D6R9Q1 Q96BP3 203 209 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0096554 83.614 By MS/MS By matching 1 2 1.2194 1.201 7.9116 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1871 1.2066 NaN 1 0 Median 1.2303 1.0539 1.7898 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14857000 6390700 8466700 0 0 0 0 0 0 13512000 5811800 7700100 1345400 578890 766540 0 0 0 0 0 0 14539 3609 15137 74350;74351;74352 75434;75435 75435 2 IFLENHVR AYPEPLGERLYTETKIFLENHVRHLHKRVL RLYTETKIFLENHVRHLHKRVLESEEQVLV K I F V R H 0 1 1 0 0 0 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 8 0 1026.5611 A0A0A0MTN0;Q13617;Q5T2B5;Q5T2B7 A0A0A0MTN0 76 83 CUL2 Cullin-2 yes no 2 0.00077411 124.37 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14540 196 15138 74353 75436 75436 1 IFLLTNNNLLLADQK VVNKINRANGKSTSRIFLLTNNNLLLADQK IFLLTNNNLLLADQKSGQIKSEVPLVDVTK R I F Q K S 1 0 3 1 0 1 0 0 0 1 5 1 0 1 0 0 1 0 0 0 0 0 15 0 1728.9774 E9PDF6;O43795;H7C2Y7 E9PDF6 978 992 MYO1B Unconventional myosin-Ib yes no 2 0.0049579 35.541 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.99409 1.0366 20.948 4 Median 1.0832 1.0901 NaN 1 0 Median 1.6921 1.4503 NaN 1 0 Median 0.91228 0.98567 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86924 0.89235 NaN 1 0 Median NaN NaN NaN 0 0 Median 5858600 2955200 2903400 1552700 745310 807410 971850 429220 542630 2523000 1342100 1180800 0 0 0 811070 438530 372550 0 0 0 14541 914 15139 74354;74355;74356;74357 75437;75438;75439;75440 75437 4 IFLPPPPGIR ILPCYGSMTTDQQRRIFLPPPPGIRKCVIS DQQRRIFLPPPPGIRKCVISTNISATSLTI R I F I R K 0 1 0 0 0 0 0 1 0 2 1 0 0 1 4 0 0 0 0 0 0 0 10 0 1105.6648 Q8IX18;F5H625 Q8IX18 330 339 DHX40 Probable ATP-dependent RNA helicase DHX40 yes no 2 0.010957 43.246 By matching By MS/MS By matching 1 1 1 0.59308 0.4871 31.128 3 Median NaN NaN NaN 0 0 Median 0.6134 0.54922 NaN 1 0 Median 0.28738 0.30474 NaN 1 0 Median 0.59308 0.4871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2071900 1447400 624480 0 0 0 153150 84657 68497 1843100 1320200 522910 75620 42541 33079 0 0 0 0 0 0 14542 3332 15140 74358;74359;74360 75441 75441 1 IFLQDIK HAEKLMKLQNQRGGRIFLQDIKKPDCDDWE LQNQRGGRIFLQDIKKPDCDDWESGLNAME R I F I K K 0 0 0 1 0 1 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 7 0 875.51165 P02794;G3V192;G3V1D1;E9PRK8;E9PKY7;E9PPQ4 P02794 81 87 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 2 0.014432 74.415 By MS/MS By MS/MS 4 3 1.0232 0.87286 48.634 7 Median 1.3906 1.3037 37.599 4 1 Median 0.71961 0.61748 30.222 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57868000 29522000 28345000 28123000 11550000 16573000 29745000 17972000 11772000 0 0 0 0 0 0 0 0 0 0 0 0 14543 1838 15141 74361;74362;74363;74364;74365;74366;74367 75442;75443;75444;75445;75446;75447;75448 75447 7 IFNAEVLFR QCSEKLVQLILHEYKIFNAEVLFREDCSPD ILHEYKIFNAEVLFREDCSPDEFIDVIVGN K I F F R E 1 1 1 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 9 0 1107.6077 P55039;A8MZF9 P55039 212 220 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.014496 44.447 By MS/MS By matching By matching 1 1 1 1.1874 1.0476 6.713 3 Plateau 1.1336 1.1381 NaN 1 0 Median 1.2155 1.0476 NaN 1 0 Median 0.9613 0.99641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5878400 2664200 3214100 2395200 1091300 1303900 2695400 1192600 1502800 787750 380300 407440 0 0 0 0 0 0 0 0 0 14544 2492 15142 74368;74369;74370 75449 75449 1 IFNETPINPR PFQHLEKSAVLQEARIFNETPINPRRCLHI LQEARIFNETPINPRRCLHILTKILYLLNQ R I F P R R 0 1 2 0 0 0 1 0 0 2 0 0 0 1 2 0 1 0 0 0 0 0 10 0 1199.6299 Q9UBF2 Q9UBF2 33 42 COPG2 Coatomer subunit gamma-2 yes yes 2 0.0011347 68.224 By MS/MS By matching 1 1 0.90533 0.82166 14.083 2 Median 0.95493 0.90769 NaN 1 0 Median 0.8583 0.74378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9529300 4523800 5005500 6559300 2901100 3658200 2970000 1622700 1347300 0 0 0 0 0 0 0 0 0 0 0 0 14545 4238 15143 74371;74372 75450 75450 1 IFNLSGGEK GIMFSVRPPKKSWKKIFNLSGGEKTLSSLA KKSWKKIFNLSGGEKTLSSLALVFALHHYK K I F E K T 0 0 1 0 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 963.50255 Q9NTJ3;E9PD53 Q9NTJ3 1188 1196 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0066905 69.423 By MS/MS 1 26.567 23.684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26.567 23.684 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49565000 1212200 48353000 0 0 0 0 0 0 0 0 0 49565000 1212200 48353000 0 0 0 0 0 0 14546 4108 15144 74373 75451 75451 1 IFNLYPR DENQFVAVTSTNAAKIFNLYPRKGRISVGS VTSTNAAKIFNLYPRKGRISVGSDSDLVIW K I F P R K 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 7 0 921.50724 Q14195;H0YBT4;Q14117 Q14195 391 397 DPYSL3;DPYS Dihydropyrimidinase-related protein 3;Dihydropyrimidinase no no 2 0.010361 82.263 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.97871 0.91824 7.5785 5 Median 0.90321 0.88549 5.3248 2 0 Median 1.0649 0.91824 NaN 1 0 Median 0.97871 1.0416 NaN 1 0 Median 1.0127 0.88171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10393000 5441500 4951600 6815100 3633700 3181400 1407300 721240 686050 2053400 1038000 1015400 117320 48554 68765 0 0 0 0 0 0 14547 2864 15145 74374;74375;74376;74377;74378 75452;75453;75454;75455;75456 75453 5 IFNSDELIHFR VTCMNEEHKLSFLKKIFNSDELIHFRLRLL FLKKIFNSDELIHFRLRLLEEAQLQDLEKA K I F F R L 0 1 1 1 0 0 1 0 1 2 1 0 0 2 0 1 0 0 0 0 0 0 11 0 1389.7041 Q9NU22;Q5T795 Q9NU22 209 219 MDN1 Midasin yes no 2;3 1.1547E-05 102.61 By MS/MS 2 1.1091 1.1685 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1091 1.1685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13403000 6477800 6925700 0 0 0 0 0 0 13403000 6477800 6925700 0 0 0 0 0 0 0 0 0 14548 4112 15146 74379;74380 75457;75458;75459 75459 3 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK EISYLKKLKVKKQDRIFPPETSASVAATPP VNSSASADKPLSNMKILTLGKLSRNKDEVK R I F M K I 9 0 2 1 0 0 1 0 0 1 1 2 1 1 7 8 3 0 0 2 0 0 39 1 3766.8724 P09874 P09874 356 394 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4 6.5845E-17 65.315 By MS/MS By MS/MS By MS/MS 2 4 3 0.32952 0.35598 10.193 9 Median 0.3135 0.33082 7.1614 2 1 Median NaN NaN NaN 0 0 Median 0.29593 0.34201 8.9304 4 2 Median 0.40693 0.37574 7.3539 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98677000 77897000 20779000 6241900 5108800 1133000 0 0 0 85958000 68583000 17376000 6476400 4205900 2270400 0 0 0 0 0 0 14549 1922 15147 74381;74382;74383;74384;74385;74386;74387;74388;74389 75460;75461;75462;75463;75464;75465;75466;75467;75468;75469;75470;75471;75472;75473 75462 14 IFQEQVEK PMSADRVVAFMDHIRIFQEQVEKLKALHVD AFMDHIRIFQEQVEKLKALHVDSAEYSCLK R I F E K L 0 0 0 0 0 2 2 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 1019.5288 P10589;F1DAL7;F1DAL9 P10589 301 308 NR2F1 COUP transcription factor 1 no no 2 0.0023085 111.82 By matching By MS/MS By MS/MS 1 1 1 1.173 1.0053 24.211 3 Median NaN NaN NaN 0 0 Median 1.1777 1.0053 NaN 1 0 Median 0.6971 0.67794 NaN 1 0 Median 1.173 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17789000 8989700 8799300 0 0 0 1461600 813960 647600 8449900 4850400 3599500 7877600 3325300 4552200 0 0 0 0 0 0 14550 1941 15148 74390;74391;74392 75474;75475;75476;75477 75476 4 IFQFQNFTNTR SPWDPKENLPQDYARIFQFQNFTNTRKSIF DYARIFQFQNFTNTRKSIFKEVEEKEVEGA R I F T R K 0 1 2 0 0 2 0 0 0 1 0 0 0 3 0 0 2 0 0 0 0 0 11 0 1414.6993 Q2NL82 Q2NL82 527 537 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 8.3065E-13 150.08 By MS/MS By MS/MS 1 1 1.5498 1.5778 28.176 2 Median 1.3388 1.2928 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7942 1.9257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10496000 4555700 5940200 7071000 3295200 3775800 0 0 0 3424900 1260400 2164400 0 0 0 0 0 0 0 0 0 14551 3004 15149 74393;74394 75478;75479 75478 2 IFQGNVHNFEK VWDVRPFAPKERCVKIFQGNVHNFEKNLLR RCVKIFQGNVHNFEKNLLRCSWSPDGSKIA K I F E K N 0 0 2 0 0 1 1 1 1 1 0 1 0 2 0 0 0 0 0 1 0 0 11 0 1331.6622 Q96DI7;Q9NSS8 Q96DI7 276 286 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2;3 4.818E-05 100.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 5 4 1.1384 1.0643 16.79 18 Median 1.1761 1.0978 11.725 2 0 Median 1.2489 1.0713 NaN 1 0 Median 0.98596 0.96577 4.6683 4 0 Median 1.1751 1.0031 12.56 2 0 Median 1.0995 1.1031 14.466 5 0 Median 1.2501 1.0056 27.56 4 0 Median 283280000 133610000 149670000 14700000 6282600 8417600 4063200 1632000 2431300 103960000 52399000 51565000 38508000 16545000 21962000 98918000 45856000 53062000 23123000 10891000 12232000 14552 3627 15150 74395;74396;74397;74398;74399;74400;74401;74402;74403;74404;74405;74406;74407;74408;74409;74410;74411;74412 75480;75481;75482;75483;75484;75485;75486;75487;75488;75489;75490;75491;75492;75493;75494;75495;75496;75497;75498;75499;75500;75501 75498 22 IFQGSFGGPTLYENPHYQSPNMHR ALVEIGPRFVLNLIKIFQGSFGGPTLYENP TLYENPHYQSPNMHRRVIRSITAAKYREKQ K I F H R R 0 1 2 0 0 2 1 3 2 1 1 0 1 2 3 2 1 0 2 0 0 0 24 0 2776.2816 Q8TDN6 Q8TDN6 243 266 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3;4 3.285E-18 77.847 By MS/MS By matching By matching By MS/MS 1 1 2 6 0.64282 0.6541 185.36 10 Median 1.2121 1.2053 NaN 1 0 Median 0.8784 0.75326 NaN 1 0 Median 8.2544 9.247 384.99 2 0 Median NaN NaN NaN 0 0 Median 0.58893 0.58977 125.13 6 0 Median NaN NaN NaN 0 0 Median 361670000 72839000 288840000 4022600 1865000 2157700 1213600 682810 530780 249900000 14657000 235250000 0 0 0 106530000 55635000 50900000 0 0 0 14553 3473 15151 74413;74414;74415;74416;74417;74418;74419;74420;74421;74422 75502;75503;75504;75505;75506;75507;75508;75509;75510 75507 9 IFQIHTSR RKIEFPLPDEKTKKRIFQIHTSRMTLADDV DEKTKKRIFQIHTSRMTLADDVTLDDLIMA R I F S R M 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 8 0 1000.5454 P62191 P62191 364 371 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.0024447 108.46 By MS/MS By MS/MS 1 1 1.2748 1.1723 6.6675 2 Median 1.2318 1.2289 NaN 1 0 Median 1.3192 1.1183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8314800 3682000 4632800 3237000 1470600 1766400 5077800 2211400 2866400 0 0 0 0 0 0 0 0 0 0 0 0 14554 2571 15152 74423;74424 75511;75512;75513 75513 3 IFQILYANEGESK TQTDVYRADAKEIPRIFQILYANEGESKKE PRIFQILYANEGESKKEQEFPVEPVGEKSN R I F S K K 1 0 1 0 0 1 2 1 0 2 1 1 0 1 0 1 0 0 1 0 0 0 13 0 1510.7668 O75116;E9PF63;Q14DU5 O75116 1227 1239 ROCK2 Rho-associated protein kinase 2 yes no 2 0.048849 40.727 By MS/MS 1 0.99954 0.96239 NaN 1 Median 0.99954 0.96239 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3833000 1759900 2073100 3833000 1759900 2073100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14555 1644 15153 74425 75514 75514 1 IFQKGESPVDYDGGR VLASRYGIRGFPTIKIFQKGESPVDYDGGR IFQKGESPVDYDGGRTRSDIVSRALDLFSD K I F G R T 0 1 0 2 0 1 1 3 0 1 0 1 0 1 1 1 0 0 1 1 0 0 15 1 1666.7951 Q15084 Q15084 242 256 PDIA6 Protein disulfide-isomerase A6 yes yes 2;3 0.00010844 65.472 By MS/MS 2 1.0357 1.0301 7.7277 2 Median 1.0357 1.0301 7.7277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60473000 28470000 32003000 60473000 28470000 32003000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14556 2927 15154 74426;74427 75515;75516;75517 75515 3 IFQNAPTDPTQDFSTQVAK SIPDFQRKYVDKLEKIFQNAPTDPTQDFST APTDPTQDFSTQVAKLGHGLLSGEYSKPVP K I F A K L 2 0 1 2 0 3 0 0 0 1 0 1 0 2 2 1 3 0 0 1 0 0 19 0 2107.0222 P45974 P45974 361 379 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2;3 8.7715E-07 60.401 By MS/MS By matching By matching 3 2 1 0.95016 0.91772 23.539 6 Median 0.72615 0.69962 24.869 3 0 Median 1.1045 0.98583 16.419 2 0 Median 0.91792 0.96853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39372000 21894000 17478000 35198000 19958000 15239000 2420100 1022800 1397300 1754100 913090 841010 0 0 0 0 0 0 0 0 0 14557 2332 15155 74428;74429;74430;74431;74432;74433 75518;75519;75520;75521;75522;75523 75518 6 IFQNLDGALDEVVLK EKREQINITLDHRCRIFQNLDGALDEVVLK IFQNLDGALDEVVLKFEMGHVRARNLAYDT R I F L K F 1 0 1 2 0 1 1 1 0 1 3 1 0 1 0 0 0 0 0 2 0 0 15 0 1672.9036 Q02809 Q02809 206 220 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 1.332E-07 131.43 By MS/MS By MS/MS By matching 1 4 1 1.1329 1.0292 14.023 6 Median 1.0741 1.0362 NaN 1 0 Median 1.2034 1.0617 6.1946 4 1 Median 0.71774 0.76769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21318000 9771300 11546000 3333300 1499300 1834000 17168000 7803900 9364000 816420 468060 348360 0 0 0 0 0 0 0 0 0 14558 2702 15156 74434;74435;74436;74437;74438;74439 75524;75525;75526;75527 75526 4 IFQNLNGALDEVVLK GLREKLSLNLDHKSRIFQNLNGALDEVVLK IFQNLNGALDEVVLKFDRNRVRIRNVAYDT R I F L K F 1 0 2 1 0 1 1 1 0 1 3 1 0 1 0 0 0 0 0 2 0 0 15 0 1671.9196 O60568;H7C2V1 O60568 218 232 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes no 2 0.0056256 34.887 By MS/MS 2 0.93384 0.81536 8.1352 2 Median NaN NaN NaN 0 0 Median 0.93384 0.81536 8.1352 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8491100 4207900 4283200 0 0 0 8491100 4207900 4283200 0 0 0 0 0 0 0 0 0 0 0 0 14559 1621 15157 74440;74441 75528;75529 75529 2 IFQPVIEAPGASK RIEKAANPSGKKKLKIFQPVIEAPGASKCI LKIFQPVIEAPGASKCIGPGCCHVAQPDSV K I F S K C 2 0 0 0 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 13 0 1355.7449 Q9BTC0 Q9BTC0 384 396 DIDO1 Death-inducer obliterator 1 yes yes 2 3.8991E-05 90.685 By MS/MS By MS/MS 3 1 0.65098 0.70068 14.427 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62691 0.6791 7.396 3 0 Median 0.96297 0.87604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56635000 34041000 22593000 0 0 0 0 0 0 55756000 33605000 22151000 878740 436520 442220 0 0 0 0 0 0 14560 3824 15158 74442;74443;74444;74445 75530;75531;75532;75533;75534 75533 5 IFQTLNGAVDEVVLK LKREAINITLDHKCKIFQTLNGAVDEVVLK IFQTLNGAVDEVVLKFENGKARAKNTFYET K I F L K F 1 0 1 1 0 1 1 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 15 0 1644.9087 O00469;E7ETU9;C9JXZ0 O00469 218 232 PLOD2 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 yes no 2 0.0091547 31.431 By MS/MS 1 2.3708 2.1012 NaN 1 Median NaN NaN NaN 0 0 Median 2.3708 2.1012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807000 659500 1147500 0 0 0 1807000 659500 1147500 0 0 0 0 0 0 0 0 0 0 0 0 14561 890 15159 74446 75535 75535 1 IFRDGEEAGAYDGPR NTCNKYGVSGYPTLKIFRDGEEAGAYDGPR IFRDGEEAGAYDGPRTADGIVSHLKKQAGP K I F P R T 2 2 0 2 0 0 2 3 0 1 0 0 0 1 1 0 0 0 1 0 0 0 15 1 1651.759 P30101;H7BZJ3 P30101 105 119 PDIA3 Protein disulfide-isomerase A3 no no 2;3 9.4992E-10 101.39 By MS/MS By MS/MS By MS/MS By MS/MS 7 2 2 2 0.84304 0.85134 9.7542 13 Median 0.7986 0.80646 7.866 7 0 Median 1.0582 0.95434 5.2152 2 0 Median 0.86629 0.93565 10.768 2 0 Median 0.94467 0.86916 4.7049 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84199000 43161000 41038000 62511000 32967000 29544000 10343000 4559600 5783200 5954200 2909900 3044300 5390900 2724900 2666000 0 0 0 0 0 0 14562 2189;1251 15160 74447;74448;74449;74450;74451;74452;74453;74454;74455;74456;74457;74458;74459 75536;75537;75538;75539;75540;75541;75542;75543;75544;75545;75546;75547;75548;75549 75541 14 IFREDYSITTK WSQKKLDEMTDRDWRIFREDYSITTKGGKI RDWRIFREDYSITTKGGKIPNPIRSWKDSS R I F T K G 0 1 0 1 0 0 1 0 0 2 0 1 0 1 0 1 2 0 1 0 0 0 11 1 1371.7034 Q9BUQ8 Q9BUQ8 372 382 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2;3 5.1094E-05 98.044 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 2 2 2 0.99923 1.0342 33.143 15 Median 0.79785 0.82079 36.781 4 0 Median 0.93783 0.89826 79.511 2 0 Median 0.91446 1.0342 17.841 3 0 Median 1.4025 1.3353 3.0926 2 1 Median 1.0524 1.1653 18.574 2 1 Median 1.2392 1.0843 29.693 2 0 Median 105850000 49493000 56352000 23936000 11574000 12362000 3297300 1553000 1744300 50389000 24965000 25424000 17376000 6645900 10730000 8366800 3721000 4645800 2480700 1034000 1446600 14563 3842 15161 74460;74461;74462;74463;74464;74465;74466;74467;74468;74469;74470;74471;74472;74473;74474 75550;75551;75552;75553;75554;75555;75556;75557;75558;75559;75560;75561 75553 12 IFREEQNGEDEDGGWR GRKHEFIRSESENWRIFREEQNGEDEDGGW FREEQNGEDEDGGWRLAGSRRDGERWRPHS R I F W R L 0 2 1 2 0 1 4 3 0 1 0 0 0 1 0 0 0 1 0 0 0 0 16 1 1935.8347 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1;C9JH78;C9IYH5 Q6Y7W6 206 221 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 0.00020158 44.294 By MS/MS 1 0.8273 0.88472 NaN 1 Median 0.8273 0.88472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4317200 2280600 2036600 4317200 2280600 2036600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14564 3192 15162 74475 75562;75563 75563 2 IFRQPQGHLLLIGVSGAGK VLFNEVLDHVLRIDRIFRQPQGHLLLIGVS PQGHLLLIGVSGAGKTTLSRFVAWMNGLSV R I F G K T 1 1 0 0 0 2 0 4 1 2 3 1 0 1 1 1 0 0 0 1 0 0 19 1 1990.1476 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2925 2943 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 2.8129E-05 48.883 By MS/MS 2 0.91374 1.0572 11.428 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91374 1.0572 11.428 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8023300 4029100 3994200 0 0 0 0 0 0 8023300 4029100 3994200 0 0 0 0 0 0 0 0 0 14565 2865 15163 74476;74477 75564;75565 75564 2 IFSAVQQFYQPK KGKSISLLCLEGLQKIFSAVQQFYQPKIQQ LQKIFSAVQQFYQPKIQQFLRALDVTDKEG K I F P K I 1 0 0 0 0 3 0 0 0 1 0 1 0 2 1 1 0 0 1 1 0 0 12 0 1454.7558 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 915 926 FANCI Fanconi anemia group I protein yes no 2 0.0051347 60.91 By MS/MS 1 0.77452 0.83965 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77452 0.83965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4106700 2159600 1947000 0 0 0 0 0 0 4106700 2159600 1947000 0 0 0 0 0 0 0 0 0 14566 4132 15164 74478 75566 75566 1 IFSEENSDEIIK PKLPTLPKNYSNTSKIFSEENSDEIIKLLG TSKIFSEENSDEIIKLLGDVRLNILVLGGS K I F I K L 0 0 1 1 0 0 3 0 0 3 0 1 0 1 0 2 0 0 0 0 0 0 12 0 1422.6878 Q9UJX5 Q9UJX5 155 166 ANAPC4 Anaphase-promoting complex subunit 4 yes yes 2 0.0064203 58.699 By MS/MS 1 1.145 1.2509 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.145 1.2509 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9878100 4339900 5538200 0 0 0 0 0 0 9878100 4339900 5538200 0 0 0 0 0 0 0 0 0 14567 4302 15165 74479 75567 75567 1 IFSFAHQTISALIK ENSKVDDKWEKKCQKIFSFAHQTISALIKA KIFSFAHQTISALIKAELAELPLRLFLQGA K I F I K A 2 0 0 0 0 1 0 0 1 3 1 1 0 2 0 2 1 0 0 0 0 0 14 0 1574.8821 Q96QK1 Q96QK1 560 573 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 2.515E-16 184.31 By MS/MS 2 1.268 1.1157 1.1502 2 Median NaN NaN NaN 0 0 Median 1.268 1.1157 1.1502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11759000 5202400 6556200 0 0 0 11759000 5202400 6556200 0 0 0 0 0 0 0 0 0 0 0 0 14568 3722 15166 74480;74481 75568;75569 75569 2 IFSFLLNTLQENVNK RRRDIQQTLTQNMERIFSFLLNTLQENVNK IFSFLLNTLQENVNKYQQVKTDTSQESKAQ R I F N K Y 0 0 3 0 0 1 1 0 0 1 3 1 0 2 0 1 1 0 0 1 0 0 15 0 1778.9567 Q9HAV4 Q9HAV4 189 203 XPO5 Exportin-5 yes yes 2 0.0011976 42.001 By MS/MS 3 1.2754 1.1565 5.5581 3 Median NaN NaN NaN 0 0 Median 1.2754 1.1565 5.5581 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2007700 961800 1045900 0 0 0 2007700 961800 1045900 0 0 0 0 0 0 0 0 0 0 0 0 14569 4012 15167 74482;74483;74484 75570;75571 75571 2 IFSGSSHQDLSQK ______________________________ IKIFSGSSHQDLSQKIADRLGLELGKVVTK K I F Q K I 0 0 0 1 0 2 0 1 1 1 1 1 0 1 0 4 0 0 0 0 0 0 13 0 1432.6947 B1ALA9;P60891;A0A2R8Y7H4;A0A0B4J207;P21108;B1ALA7;Q15244 B1ALA9 6 18 PRPS1;PRPS1L1 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3 yes no 2;3 1.5258E-05 136.48 By MS/MS By MS/MS 3 3 1.3503 1.2107 21 6 Median 1.3282 1.2467 11.518 3 0 Median 1.4007 1.1756 30.467 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53788000 21495000 32293000 29210000 11670000 17540000 24578000 9824800 14753000 0 0 0 0 0 0 0 0 0 0 0 0 14570 571 15168 74485;74486;74487;74488;74489;74490 75572;75573;75574;75575;75576;75577;75578;75579 75576 8 IFSGVFVK SLLVQRTIARLRLKKIFSGVFVKVTPQNLK ARLRLKKIFSGVFVKVTPQNLKMLRIVEPY K I F V K V 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 2 0 0 8 0 895.51674 Q6DKI1;R4GMU7 Q6DKI1 124 131 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.018519 47.849 By matching By MS/MS By MS/MS 2 1 1 1.3272 1.2428 6.619 4 Median NaN NaN NaN 0 0 Median 1.513 1.2952 3.0737 2 0 Median 1.1772 1.1325 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1909 1.2187 NaN 1 0 Median NaN NaN NaN 0 0 Median 42359000 18410000 23949000 0 0 0 613550 236110 377450 1657100 866440 790630 0 0 0 40088000 17307000 22781000 0 0 0 14571 3132 15169 74491;74492;74493;74494 75580;75581;75582 75581 3 IFSHAYFHHR SSVAKLGSVCRRIYRIFSHAYFHHRQIFDE RRIYRIFSHAYFHHRQIFDEYENETFLCHR R I F H R Q 1 1 0 0 0 0 0 0 3 1 0 0 0 2 0 1 0 0 1 0 0 0 10 0 1313.6418 Q9Y3A3;B4DM50;S4R3N1 S4R3N1 202 211 MOB4;HSPE1-MOB4 MOB-like protein phocein no no 3 0.0010608 55.064 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1721 1.1429 17.144 4 Median 1.3512 1.2778 NaN 1 1 Median 1.0167 0.85961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9624 1.1065 NaN 1 0 Median 1.3997 1.1806 NaN 1 0 Median 12529000 5266700 7262600 6792000 2618900 4173100 5111200 2357800 2753400 0 0 0 0 0 0 266160 129760 136400 359890 160230 199660 14572 4561;4411 15170 74495;74496;74497;74498 75583;75584 75584 2 IFSIVEQR GRKVPCVGLSIGVERIFSIVEQRLEALEEK LSIGVERIFSIVEQRLEALEEKIRTTETQV R I F Q R L 0 1 0 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 8 0 990.54983 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2 P12081 389 396 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0023085 130.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1 1.1926 1.1102 12.947 9 Median 1.1902 1.1288 NaN 1 0 Median 1.3116 1.1061 13.998 2 0 Median 1.1914 1.1898 5.5268 2 0 Median 1.1936 1.0191 8.9499 3 0 Plateau NaN NaN NaN 0 0 Median 1.2693 1.1102 NaN 1 0 Median 72383000 33171000 39211000 17404000 8327200 9077000 20767000 9201100 11565000 21069000 9647800 11422000 12772000 5854300 6917400 0 0 0 370810 140930 229880 14573 1975 15171 74499;74500;74501;74502;74503;74504;74505;74506;74507 75585;75586;75587;75588;75589;75590;75591;75592;75593 75585 9 IFSLSGTLETVR NLDSDVVQLRERHWRIFSLSGTLETVRGRG HWRIFSLSGTLETVRGRGVVGREPVLSKEQ R I F V R G 0 1 0 0 0 0 1 1 0 1 2 0 0 1 0 2 2 0 0 1 0 0 12 0 1321.7242 Q9Y2S7;B4DEM9 Q9Y2S7 286 297 POLDIP2 Polymerase delta-interacting protein 2 yes no 2 3.2326E-06 132.78 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.4224 1.1915 13.084 5 Median 1.1438 1.1353 NaN 1 0 Median 1.4696 1.2567 7.5329 2 0 Median 1.1919 1.1425 NaN 1 0 Median 1.7556 1.5479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20960000 9168500 11791000 7005100 3366500 3638500 10947000 4689100 6258200 1331600 581310 750300 1675500 531510 1144000 0 0 0 0 0 0 14574 4390 15172 74508;74509;74510;74511;74512 75594;75595;75596;75597;75598;75599 75595 6 IFSPNVVNLTLVDLPGMTK SGNNKGVSPEPIHLKIFSPNVVNLTLVDLP NVVNLTLVDLPGMTKVPVGDQPKDIELQIR K I F T K V 0 0 2 1 0 0 0 1 0 1 3 1 1 1 2 1 2 0 0 3 0 0 19 0 2057.1231 O00429;F8W1W3;B4DPZ9;F8VUJ9 O00429 134 152 DNM1L Dynamin-1-like protein yes no 2 1.1328E-07 70.622 By MS/MS By MS/MS By matching By matching 2 1 2 1 0.85411 0.74397 61.445 6 Median 0.60266 0.55818 8.7066 2 0 Median 0.73837 0.64864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.97 1.9677 31.392 2 0 Median 0.98799 0.85331 NaN 1 0 Median 12932000 6958900 5973100 7525900 4504500 3021400 3304800 1831800 1473000 0 0 0 0 0 0 2033900 586810 1447100 67361 35833 31529 14575 1463 15173 74513;74514;74515;74516;74517;74518 75600;75601;75602;75603 75603 4 IFSQETLTK KEDPEPSTDGTYVWKIFSQETLTKAQILKL GTYVWKIFSQETLTKAQILKLFLSYDYAVK K I F T K A 0 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 9 0 1065.5706 Q9UHG3 Q9UHG3 407 415 PCYOX1 Prenylcysteine oxidase 1 yes yes 2 0.00091857 90.657 By MS/MS By MS/MS By matching By matching 3 4 2 1 1.1866 1.0575 41.741 10 Median 0.95555 0.91338 18.665 3 0 Median 1.5408 1.2932 56.52 4 0 Median 0.97197 0.99304 0.028587 2 0 Median 1.6297 1.4121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47194000 20490000 26704000 27766000 12682000 15084000 16229000 6269200 9959700 2339100 1176900 1162200 859740 361650 498100 0 0 0 0 0 0 14576 4279 15174 74519;74520;74521;74522;74523;74524;74525;74526;74527;74528 75604;75605;75606;75607;75608;75609;75610;75611;75612 75609 9 IFSQHLQNR VVFNEMKGAFTDNERIFSQHLQNRLLPDHT FTDNERIFSQHLQNRLLPDHTYSVVSGGDP R I F N R L 0 1 1 0 0 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1141.5992 Q5JRX3 Q5JRX3 216 224 PITRM1 Presequence protease, mitochondrial yes yes 2 9.7081E-08 136.16 By matching By MS/MS By matching 1 2 1 1.4435 1.2376 53.18 4 Median 0.57202 0.57658 NaN 1 0 Median 1.4435 1.2376 2.6141 2 1 Median NaN NaN NaN 0 0 Median 2.4571 2.0974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12025000 4868000 7157000 1092400 624070 468350 9982900 3925900 6057000 0 0 0 949790 318080 631700 0 0 0 0 0 0 14577 3050 15175 74529;74530;74531;74532 75613;75614 75613 2 IFSQRPFDKLEQLSSGNK ELLITDLLPDNRKLRIFSQRPFDKLEQLSS QRPFDKLEQLSSGNKDSRDRRLILWYFEHQ R I F N K D 0 1 1 1 0 2 1 1 0 1 2 2 0 2 1 3 0 0 0 0 0 0 18 2 2093.0906 Q03701 Q03701 306 323 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3;4 5.1421E-05 45.876 By MS/MS By matching By matching 2 1 1 1.0081 1.152 46.325 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0081 1.1487 3.9435 2 0 Median 2.8683 2.876 NaN 1 0 Median 0.95347 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median 9894200 4504300 5389900 0 0 0 0 0 0 8222100 3877700 4344300 334950 106410 228540 1337200 520200 816990 0 0 0 14578 2710 15176 74533;74534;74535;74536 75615;75616 75615 2 IFSSLHVSGEQLSQLTGVAAILR VRLVDSVKENAGTVRIFSSLHVSGEQLSQL GEQLSQLTGVAAILRFPVPELSDQEGDSSS R I F L R F 2 1 0 0 0 2 1 2 1 2 4 0 0 1 0 4 1 0 0 2 0 0 23 0 2425.3329 Q9BRX2 Q9BRX2 345 367 PELO Protein pelota homolog yes yes 3 4.1759E-05 35.174 By matching By MS/MS 1 1 1.3563 1.2577 38.052 2 Median NaN NaN NaN 0 0 Median 1.1259 0.96101 NaN 1 0 Median 1.6338 1.646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4335300 1763700 2571600 0 0 0 1466100 728490 737610 2869200 1035200 1834000 0 0 0 0 0 0 0 0 0 14579 3805 15177 74537;74538 75617 75617 1 IFSSVQWLSGVKPVLSTK SYGFYPGQVLIGPAKIFSSVQWLSGVKPVL SVQWLSGVKPVLSTKSKFRVVVEEVQVVEL K I F T K S 0 0 0 0 0 1 0 1 0 1 2 2 0 1 1 4 1 1 0 3 0 0 18 1 1975.1142 Q9C0C9;K7EQ12 Q9C0C9 272 289 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2;3 0.00021926 41.052 By MS/MS By matching 2 1 1.2752 1.2649 19.28 3 Median 1.3514 1.3564 9.8806 2 0 Median 1.0249 0.99364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8405700 3705000 4700600 6214000 2649400 3564600 2191700 1055600 1136000 0 0 0 0 0 0 0 0 0 0 0 0 14580 3904 15178 74539;74540;74541 75618;75619;75620 75618 3 IFSVIHSNDPVAR KHLEKILNVDEFVKRIFSVIHSNDPVARAI KRIFSVIHSNDPVARAITLRMLGSLASIIP R I F A R A 1 1 1 1 0 0 0 0 1 2 0 0 0 1 1 2 0 0 0 2 0 0 13 0 1453.7678 Q9NVH2 Q9NVH2 107 119 INTS7 Integrator complex subunit 7 yes yes 3 0.012302 43.382 By MS/MS 2 0.70981 0.75538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70981 0.75538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7169600 4754500 2415100 0 0 0 0 0 0 7169600 4754500 2415100 0 0 0 0 0 0 0 0 0 14581 4131 15179 74542;74543 75621;75622 75622 2 IFTASNVSSVPLPAENVTITAGQR EWGTEDWNEDLSETKIFTASNVSSVPLPAE VPLPAENVTITAGQRIDLAVLLGKTPSTME K I F Q R I 3 1 2 0 0 1 1 1 0 2 1 0 0 1 2 3 3 0 0 3 0 0 24 0 2471.302 F8W726;Q14157;Q5VU77 F8W726 269 292 UBAP2L Ubiquitin-associated protein 2-like yes no 3 5.7983E-08 43.888 By MS/MS By matching 2 1 0.82758 0.80024 14.224 3 Plateau 0.74595 0.73107 12.786 2 0 Median NaN NaN NaN 0 0 Median 0.8098 0.88422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7705600 4008800 3696900 5699400 3045900 2653500 0 0 0 2006300 962900 1043400 0 0 0 0 0 0 0 0 0 14582 1083 15180 74544;74545;74546 75623;75624 75624 2 IFTDLQSEGFPVIETSTLTEEGVIK CDVKRIAELSEDDQKIFTDLQSEGFPVIET PVIETSTLTEEGVIKVKTEACDRLLAHRVE K I F I K V 0 0 0 1 0 1 4 2 0 3 2 1 0 2 1 2 4 0 0 2 0 0 25 0 2752.4059 Q9BZE4 Q9BZE4 306 330 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 0.020348 13.896 By MS/MS 1 0.93909 0.96758 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93909 0.96758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1974700 979740 994950 0 0 0 0 0 0 0 0 0 0 0 0 1974700 979740 994950 0 0 0 14583 3898 15181 74547 75625 75625 1 IFTFAEK YLKVDAQFGGIDQRKIFTFAEKYLPALGYS FGGIDQRKIFTFAEKYLPALGYSKRVHLMN K I F E K Y 1 0 0 0 0 0 1 0 0 1 0 1 0 2 0 0 1 0 0 0 0 0 7 0 854.4538 P54577;A0A0C4DGZ5 P54577 191 197 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.02008 60.76 By MS/MS By matching 1 1 1.3939 1.267 0.88352 2 Median 1.3165 1.2591 NaN 1 0 Median 1.476 1.2749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7334300 3286800 4047500 5256800 2396300 2860500 2077500 890420 1187100 0 0 0 0 0 0 0 0 0 0 0 0 14584 2482 15182 74548;74549 75626 75626 1 IFTFGSYR SKNLPQSVIENVGGKIFTFGSYRLGVHTKG IENVGGKIFTFGSYRLGVHTKGADIDALCV K I F Y R L 0 1 0 0 0 0 0 1 0 1 0 0 0 2 0 1 1 0 1 0 0 0 8 0 989.49707 A0A0C4DGK1;G3XAH6;Q9NRJ5;P51003;G3V457;H7C3W0;G3V3I9;F8WAT4 A0A0C4DGK1 97 104 PAPOLA;PAPOLB;PAPOLG Poly(A) polymerase beta;Poly(A) polymerase alpha no no 2 0.036117 57.281 By MS/MS By MS/MS 1 1 1.0556 1.0865 19.686 2 Median 1.2641 1.2488 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.88144 0.9453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3636600 1881600 1755000 2103900 1000100 1103800 0 0 0 1532700 881490 651220 0 0 0 0 0 0 0 0 0 14585 249 15183 74550;74551 75627;75628 75627 2 IFTHHLCR SSSKQEQDLLHKTARIFTHHLCRARRYCHD LLHKTARIFTHHLCRARRYCHDLGERAGAL R I F C R A 0 1 0 0 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 0 0 8 0 1082.5444 Q9BQG0;I3L1L3 Q9BQG0 878 885 MYBBP1A Myb-binding protein 1A yes no 2 0.035374 57.559 By MS/MS 1 0.66884 0.5722 NaN 1 Median NaN NaN NaN 0 0 Median 0.66884 0.5722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287800 1628400 659360 0 0 0 2287800 1628400 659360 0 0 0 0 0 0 0 0 0 0 0 0 14586 3789 15184 74552 75629 75629 1 IFTIESTR WARKVQQRNLGVSGRIFTIESTRVRGRTGN NLGVSGRIFTIESTRVRGRTGNVLKLKVNF R I F T R V 0 1 0 0 0 0 1 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 8 0 965.5182 Q14204 Q14204 717 724 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00085421 150.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.1551 1.0702 48.914 6 Median 1.0481 1.0141 NaN 1 0 Median 1.314 1.05 NaN 1 0 Median 1.0667 1.1129 NaN 1 0 Median 0.66599 0.60006 84.507 2 0 Median NaN NaN NaN 0 0 Median 1.4139 1.1747 NaN 1 0 Median 144310000 67704000 76609000 43851000 22079000 21771000 38003000 16268000 21735000 47684000 22841000 24843000 11574000 5221300 6353100 0 0 0 3200100 1293800 1906300 14587 2865 15185 74553;74554;74555;74556;74557;74558 75630;75631;75632;75633;75634;75635;75636;75637;75638;75639 75632 10 IFTLKPVR GRSFHILAIATKDVRIFTLKPVRKELTSSG IATKDVRIFTLKPVRKELTSSGGPTKFEIH R I F V R K 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 8 1 972.61204 Q96EE3 Q96EE3 247 254 SEH1L Nucleoporin SEH1 yes yes 2 1.6954E-08 172.39 By MS/MS By MS/MS By matching 2 2 2 1.2132 1.1136 12.679 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9458 1.0512 3.8469 2 0 Median 1.3329 1.2099 22.917 2 0 Median NaN NaN NaN 0 0 Median 1.3178 1.1908 5.1655 2 0 Median 19325000 9592700 9732100 0 0 0 0 0 0 15051000 7752900 7298200 3421600 1511500 1910100 0 0 0 852030 328270 523770 14588 3634 15186 74559;74560;74561;74562;74563;74564 75640;75641;75642;75643 75640 4 IFTLNLSAPFISQFYK ESVLKVAHHASENNRIFTLNLSAPFISQFY FTLNLSAPFISQFYKESLMKVMPYVDILFG R I F Y K E 1 0 1 0 0 1 0 0 0 2 2 1 0 3 1 2 1 0 1 0 0 0 16 0 1888.0135 P55263 P55263 209 224 ADK Adenosine kinase yes yes 2 0.035944 23.851 By MS/MS 1 0.93103 0.79516 NaN 1 Median NaN NaN NaN 0 0 Median 0.93103 0.79516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6597300 3390300 3207000 0 0 0 6597300 3390300 3207000 0 0 0 0 0 0 0 0 0 0 0 0 14589 2497 15187 74565 75644;75645 75644 2 IFTNLYGR APKKTSFGSLKDEDRIFTNLYGRHDWRLKG SLKDEDRIFTNLYGRHDWRLKGSLSRGDWY R I F G R H 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 8 0 982.52362 G3V0I5;P49821;E9PPS5;E9PQP1 G3V0I5 34 41 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 2 0.0047788 79.597 By MS/MS By matching By matching 1 1 1 1.0654 1.069 16.212 3 Median 1.0139 0.98701 NaN 1 0 Median 1.5811 1.3485 NaN 1 0 Median 1.0654 1.069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15125000 7716200 7409000 6231300 3468900 2762400 3525000 1470100 2054900 5368800 2777100 2591700 0 0 0 0 0 0 0 0 0 14590 1100 15188 74566;74567;74568 75646 75646 1 IFTPIVEHLGLQIR VPANRYTPLKENWMKIFTPIVEHLGLQIRF KIFTPIVEHLGLQIRFNLKSRNVEIRTCKE K I F I R F 0 1 0 0 0 1 1 1 1 3 2 0 0 1 1 0 1 0 0 1 0 0 14 0 1634.9508 Q9NRX1;F8WBJ6 Q9NRX1 95 108 PNO1 RNA-binding protein PNO1 yes no 3 0.00091214 38.787 By matching By matching By MS/MS By MS/MS 1 2 1 1 0.99138 0.8472 18.12 5 Median 0.76817 0.74395 NaN 1 0 Median 1.0703 0.91032 10.163 2 0 Median 1.1417 1.0944 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72692 0.71227 NaN 1 0 Median NaN NaN NaN 0 0 Median 6054700 2998300 3056300 1086800 613670 473130 2001500 921930 1079600 1328700 586600 742070 0 0 0 1637700 876120 761550 0 0 0 14591 4091 15189 74569;74570;74571;74572;74573 75647;75648 75647 2 IFTQLEEFR EDMEIAEGCFRHIKKIFTQLEEFRASELLR FRHIKKIFTQLEEFRASELLRSGLDRSKYL K I F F R A 0 1 0 0 0 1 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 9 0 1181.6081 O60306 O60306 1004 1012 AQR Intron-binding protein aquarius yes yes 2 0.00090662 91.318 By MS/MS By MS/MS By MS/MS 1 1 1 0.97218 1.045 1.1962 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95809 1.0539 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98648 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median 7894200 3956200 3938000 0 0 0 0 0 0 4825300 2255400 2569900 0 0 0 3068900 1700800 1368100 0 0 0 14592 1611 15190 74574;74575;74576 75649;75650;75651 75651 3 IFTSIGEDYDER TLRILFRPVASQLPRIFTSIGEDYDERVLP LPRIFTSIGEDYDERVLPSITTEILKSVVA R I F E R V 0 1 0 2 0 0 2 1 0 2 0 0 0 1 0 1 1 0 1 0 0 0 12 0 1443.6518 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2;D6RBK0 P35232 106 117 PHB Prohibitin yes no 2 3.2326E-06 141.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 4 1.426 1.1901 11.757 11 Median 1.1851 1.1136 20.515 2 0 Median 1.4335 1.2047 1.7315 2 0 Median 1.1315 1.1018 NaN 1 0 Median 1.5017 1.245 8.0707 2 0 Median NaN NaN NaN 0 0 Median 1.4653 1.4062 15.231 4 0 Linear 123630000 53708000 69921000 37602000 17891000 19711000 59220000 23904000 35316000 13642000 6739900 6901800 1011200 451720 559510 0 0 0 12154000 4721200 7432800 14593 2233 15191 74577;74578;74579;74580;74581;74582;74583;74584;74585;74586;74587 75652;75653;75654;75655;75656;75657;75658;75659;75660 75654 9 IFTSVPKR NQALKEEIKEMHGLRIFTSVPKR_______ KEMHGLRIFTSVPKR_______________ R I F K R - 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 0 8 1 946.56 Q53S33 Q53S33 100 107 BOLA3 BolA-like protein 3 yes yes 2 0.016926 56.011 By MS/MS By matching 1 1 1.1348 1.0451 23.472 2 Median 0.90284 0.88532 NaN 1 0 Median 1.4263 1.2338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1951800 842250 1109500 1242900 596000 646940 708850 246250 462600 0 0 0 0 0 0 0 0 0 0 0 0 14594 3034 15192 74588;74589 75661 75661 1 IFTTPLTPSQYYSGSK QSADVSLNPCNTPQKIFTTPLTPSQYYSGS FTTPLTPSQYYSGSKYEDLKEKYNKEVEER K I F S K Y 0 0 0 0 0 1 0 1 0 1 1 1 0 1 2 3 3 0 2 0 0 0 16 0 1788.8934 P49454 P49454 148 163 CENPF Centromere protein F yes yes 2 1.2397E-09 99.522 By MS/MS By matching 2 1 0.63227 0.75895 14.081 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66841 0.73864 3.8353 2 0 Median 0.63227 0.58143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10567000 6105900 4461200 0 0 0 0 0 0 10165000 5871200 4293900 401980 234690 167290 0 0 0 0 0 0 14595 2383 15193 74590;74591;74592 75662;75663 75663 2 IFVEFSIASETHK QEKQGEEEDAEIIVKIFVEFSIASETHKAI VKIFVEFSIASETHKAIQALNGRWFAGRKV K I F H K A 1 0 0 0 0 0 2 0 1 2 0 1 0 2 0 2 1 0 0 1 0 0 13 0 1506.7718 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 490 502 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 0.00054372 70.977 By matching By MS/MS By matching 1 2 1 0.94325 0.9299 32.854 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89231 0.89486 5.4328 2 0 Median NaN NaN NaN 0 0 Median 1.6352 1.5747 NaN 1 0 Median NaN NaN NaN 0 0 Median 13677000 5887600 7789100 1229900 496600 733310 0 0 0 11230000 5069100 6160800 0 0 0 1216800 321840 894950 0 0 0 14596 284 15194 74593;74594;74595;74596 75664;75665;75666;75667 75667 4 IFVFEPPPGVK EINPKVPVNLLRAGRIFVFEPPPGVKANML RAGRIFVFEPPPGVKANMLRTFSSIPVSRI R I F V K A 0 0 0 0 0 0 1 1 0 1 0 1 0 2 3 0 0 0 0 2 0 0 11 0 1228.6856 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4144 4154 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0001523 89.355 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.77047 0.6734 17.524 7 Median 0.66574 0.66886 NaN 1 0 Median 0.77047 0.6734 NaN 1 0 Median 0.72203 0.78556 16.922 2 1 Median 0.67946 0.62788 31.927 2 0 Median NaN NaN NaN 0 0 Median 0.78342 0.67208 NaN 1 0 Median 173040000 103220000 69828000 74442000 44796000 29646000 5703900 3339700 2364200 85592000 51066000 34525000 6326400 3501100 2825300 0 0 0 980330 513170 467150 14597 2865 15195 74597;74598;74599;74600;74601;74602;74603 75668;75669;75670;75671;75672;75673;75674;75675;75676;75677;75678;75679;75680;75681 75673 14 IFVGGIKEDTEEYNLR REDSVKPGAHLTVKKIFVGGIKEDTEEYNL FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K I F L R D 0 1 1 1 0 0 3 2 0 2 1 1 0 1 0 0 1 0 1 1 0 0 16 1 1881.9472 P51991 P51991 128 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 2.1716E-13 169.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 4 7 7 1.1838 1.1456 7.2132 24 Median NaN NaN NaN 0 0 Median 1.4187 1.3467 NaN 1 0 Median 1.0731 1.1754 5.8893 5 0 Median 1.3465 1.2163 9.5913 4 0 Median 1.0586 1.1174 5.366 7 1 Median 1.2461 1.1023 4.2531 7 0 Median 1568400000 726750000 841690000 0 0 0 37342000 14041000 23302000 1156300000 547050000 609220000 42770000 17295000 25475000 222350000 104310000 118040000 109720000 44061000 65659000 14598 2446 15196 74604;74605;74606;74607;74608;74609;74610;74611;74612;74613;74614;74615;74616;74617;74618;74619;74620;74621;74622;74623;74624;74625;74626;74627 75682;75683;75684;75685;75686;75687;75688;75689;75690;75691;75692;75693;75694;75695;75696;75697;75698;75699;75700;75701;75702;75703;75704;75705;75706;75707;75708;75709 75689 28 IFVGGIKEDTEEYNLRDYFEK REDSVKPGAHLTVKKIFVGGIKEDTEEYNL KEDTEEYNLRDYFEKYGKIETIEVMEDRQS K I F E K Y 0 1 1 2 0 0 4 2 0 2 1 2 0 2 0 0 1 0 2 1 0 0 21 2 2564.2435 P51991 P51991 128 148 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 0.0022617 25.916 By matching By matching By MS/MS By MS/MS 1 1 6 2 1.0739 1.216 9.0649 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.218 1.3655 NaN 1 0 Median 1.3235 1.3239 NaN 1 0 Median 0.99501 1.1598 7.8768 6 0 Median 1.2839 1.179 5.6592 2 0 Median 96305000 44814000 51491000 0 0 0 0 0 0 2137400 811830 1325600 326400 137520 188880 89268000 41740000 47528000 4573600 2125000 2448600 14599 2446 15197 74628;74629;74630;74631;74632;74633;74634;74635;74636;74637 75710;75711;75712 75712 3 IFVGGLNPEATEEK DPKKAMAMKKDPVKKIFVGGLNPEATEEKI KIFVGGLNPEATEEKIREYFGEFGEIEAIE K I F E K I 1 0 1 0 0 0 3 2 0 1 1 1 0 1 1 0 1 0 0 1 0 0 14 0 1502.7617 D6R9P3;D6RD18;D6RBZ0 D6R9P3 156 169 HNRNPAB yes no 2 6.9551E-11 170.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 6 3 0.84818 0.80691 15.924 20 Median 1.0083 0.93065 NaN 1 0 Median 0.88656 0.74721 15.883 2 0 Median 0.79437 0.79285 7.9849 4 0 Median 0.92557 0.79563 17.605 4 1 Median 0.81245 0.82311 23.036 6 2 Median 0.94822 0.778 9.104 3 0 Median 1377300000 720450000 656890000 20537000 7169600 13368000 7937100 3879200 4057900 740710000 394420000 346290000 67361000 31830000 35530000 451830000 239900000 211930000 88964000 43244000 45720000 14600 805 15198 74638;74639;74640;74641;74642;74643;74644;74645;74646;74647;74648;74649;74650;74651;74652;74653;74654;74655;74656;74657 75713;75714;75715;75716;75717;75718;75719;75720;75721;75722;75723;75724;75725;75726;75727;75728;75729;75730;75731;75732;75733;75734;75735;75736;75737;75738;75739;75740;75741;75742;75743;75744 75715 32 IFVGGLNPEATEEKIR DPKKAMAMKKDPVKKIFVGGLNPEATEEKI FVGGLNPEATEEKIREYFGEFGEIEAIELP K I F I R E 1 1 1 0 0 0 3 2 0 2 1 1 0 1 1 0 1 0 0 1 0 0 16 1 1771.9468 D6R9P3;D6RD18;D6RBZ0 D6R9P3 156 171 HNRNPAB yes no 2;3 1.2172E-05 81.311 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 7 2 0.86045 0.8903 24.95 13 Median 0.77852 0.83415 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91434 0.98667 13.572 2 0 Median 1.067 0.92535 NaN 1 0 Median 0.83315 0.8903 32.714 7 0 Median 0.90852 0.82951 6.7791 2 0 Median 167390000 89223000 78167000 9226300 5109900 4116300 0 0 0 8954500 4926600 4027900 8600000 4059900 4540100 137460000 73610000 63850000 3149300 1516200 1633100 14601 805 15199 74658;74659;74660;74661;74662;74663;74664;74665;74666;74667;74668;74669;74670 75745;75746;75747;75748;75749;75750;75751;75752;75753;75754 75748 10 IFVGGLPYHTTDASLR ______________________________ FVGGLPYHTTDASLRKYFEVFGEIEEAVVI K I F L R K 1 1 0 1 0 0 0 2 1 1 2 0 0 1 1 1 2 0 1 1 0 0 16 0 1745.9101 Q9BX46;F6VZ39;Q9H0Z9;E9PSF1 Q9BX46 13 28 RBM24;RBM38 RNA-binding protein 24;RNA-binding protein 38 yes no 2 0.00018897 61.435 By MS/MS 1 1.0651 1.0192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0651 1.0192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4196900 1988400 2208500 0 0 0 0 0 0 4196900 1988400 2208500 0 0 0 0 0 0 0 0 0 14602 3876 15200 74671 75755 75755 1 IFVGGLSANTVVEDVK FPRRAQPKMVTRTKKIFVGGLSANTVVEDV FVGGLSANTVVEDVKQYFEQFGKVSAGSPG K I F V K Q 1 0 1 1 0 0 1 2 0 1 1 1 0 1 0 1 1 0 0 4 0 0 16 0 1646.8879 J3KTC1;B4DHE8;Q96DH6;B4DM51 J3KTC1 108 123 MSI2 RNA-binding protein Musashi homolog 2 yes no 2 0.00055644 45.257 By matching By matching By MS/MS By matching By matching By matching 1 3 2 1 2 1 1.3026 1.1883 41.116 10 Median 0.90823 0.97084 NaN 1 0 Median 1.4064 1.1929 77.643 3 0 Median 1.1564 1.1727 6.4772 2 0 Median 1.4148 1.1837 NaN 1 0 Median 1.377 1.3947 20.048 2 0 Median 1.3218 1.079 NaN 1 0 Median 23541000 12160000 11381000 7294200 4526300 2767900 2631000 1203400 1427500 6805700 3495100 3310600 604860 261240 343630 2676400 1297600 1378800 3528900 1376000 2152900 14603 590 15201 74672;74673;74674;74675;74676;74677;74678;74679;74680;74681 75756;75757;75758 75757 2 IFVGGLSPDTPEEK PKRAKAMKTKEPVKKIFVGGLSPDTPEEKI KIFVGGLSPDTPEEKIREYFGGFGEVESIE K I F E K I 0 0 0 1 0 0 2 2 0 1 1 1 0 1 2 1 1 0 0 1 0 0 14 0 1487.7508 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44 Q14103 184 197 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2 5.0227E-09 149.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 6 5 6 4 0.82212 0.75728 31.396 27 Median 0.82212 0.75184 29.241 3 1 Median 0.9616 0.8191 6.36 3 0 Median 0.75606 0.72464 16.236 6 0 Median 0.96913 0.84345 7.1678 5 0 Median 0.70333 0.706 10.268 6 0 Median 1.1553 0.76351 72.816 4 0 Linear 3226000000 1752100000 1473900000 120370000 64168000 56202000 31961000 15934000 16027000 1882800000 1041200000 841620000 428100000 205220000 222880000 602540000 345050000 257490000 160220000 80493000 79729000 14604 2854 15202 74682;74683;74684;74685;74686;74687;74688;74689;74690;74691;74692;74693;74694;74695;74696;74697;74698;74699;74700;74701;74702;74703;74704;74705;74706;74707;74708 75759;75760;75761;75762;75763;75764;75765;75766;75767;75768;75769;75770;75771;75772;75773;75774;75775;75776;75777;75778;75779;75780;75781;75782;75783;75784;75785;75786;75787;75788;75789;75790;75791;75792;75793;75794;75795;75796;75797;75798;75799;75800;75801;75802;75803;75804;75805;75806;75807;75808;75809;75810;75811;75812;75813;75814;75815;75816;75817 75784 59 IFVGGLSPDTPEEKIR PKRAKAMKTKEPVKKIFVGGLSPDTPEEKI FVGGLSPDTPEEKIREYFGGFGEVESIELP K I F I R E 0 1 0 1 0 0 2 2 0 2 1 1 0 1 2 1 1 0 0 1 0 0 16 1 1756.9359 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44 Q14103 184 199 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 3 3.0497E-05 72.417 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.77122 0.78994 5.6179 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67703 0.72632 3.2433 2 0 Median 0.90931 0.80211 NaN 1 0 Median 0.77122 0.81305 2.2472 2 0 Median 0.84878 0.77978 NaN 1 0 Median 26325000 15600000 10725000 0 0 0 0 0 0 6329300 3970200 2359100 507870 217730 290140 18852000 11038000 7813300 636140 373950 262190 14605 2854 15203 74709;74710;74711;74712;74713;74714 75818;75819;75820;75821 75821 4 IFVGNVSAACTSQELR LVVEMSRPRPLNTWKIFVGNVSAACTSQEL FVGNVSAACTSQELRSLFERRGRVIECDVV K I F L R S 2 1 1 0 1 1 1 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1750.8672 Q96PK6;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74 Q96PK6 81 96 RBM14;RBM14-RBM4 RNA-binding protein 14 yes no 2 2.1217E-10 160.22 By MS/MS By MS/MS By MS/MS 2 1 2 0.97414 0.9763 35.56 5 Median NaN NaN NaN 0 0 Median 0.96141 0.81605 68.132 2 1 Median 0.92721 0.96034 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98871 0.99097 2.1086 2 1 Median NaN NaN NaN 0 0 Median 44882000 22199000 22683000 0 0 0 1741800 709230 1032600 6167800 3044100 3123700 0 0 0 36972000 18446000 18526000 0 0 0 14606 3712 15204 74715;74716;74717;74718;74719 75822;75823;75824;75825;75826;75827 75825 6 IFVMATHGLLSSDAPR FLAAAETLKERGAYKIFVMATHGLLSSDAP FVMATHGLLSSDAPRRIEESAIDEVVVTNT K I F P R R 2 1 0 1 0 0 0 1 1 1 2 0 1 1 1 2 1 0 0 1 0 0 16 0 1713.8872 O60256;I3L0S1;I3L4G9 O60256 293 308 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 3 5.2819E-07 87.566 By MS/MS By matching 1 1 0.98623 0.91139 6.8446 2 Median 0.87127 0.86833 NaN 1 0 Median 1.1164 0.95658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12502000 6516700 5985600 11250000 5923700 5326600 1252100 593070 659020 0 0 0 0 0 0 0 0 0 0 0 0 14607 1607 15205 74720;74721 75828;75829 75828 2 IFVNDDR ______________________________ ______________________________ R I F D R H 0 1 1 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 877.42938 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6 Q12906 6 12 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0021797 124.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 4 1.0627 0.97329 10.979 11 Median 1.0627 1.0081 NaN 1 0 Median 1.1821 1.0217 NaN 1 0 Median 0.89799 0.93363 7.5057 2 1 Median 1.1989 1.0262 7.4853 2 0 Median 0.957 1.0024 NaN 1 0 Median 1.0761 0.8561 8.8105 4 1 Median 67397000 32061000 35335000 7061200 3382300 3678900 10361000 4698400 5662400 25862000 12980000 12882000 11643000 5211200 6431800 4465500 2122200 2343300 8004000 3667700 4336300 14608 2769 15206 74722;74723;74724;74725;74726;74727;74728;74729;74730;74731;74732;74733 75830;75831;75832;75833;75834;75835;75836;75837;75838;75839;75840;75841;75842;75843;75844;75845 75833 16 IFVNDDRHVMAK ______________________________ PMRIFVNDDRHVMAKHSSVYPTQEELEAVQ R I F A K H 1 1 1 2 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 2 0 0 12 1 1443.7293 Q12906;K7EKJ9;K7ER69;K7EM82;K7EJ09;K7ERM6;K7ENK6 Q12906 6 17 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 4.3316E-06 121.83 By MS/MS By MS/MS By matching By MS/MS By MS/MS 5 5 1 16 4 1.0052 1.0727 19.027 28 Median 1.0931 1.1197 35.866 4 0 Median NaN NaN NaN 0 0 Median 0.86312 0.91626 19.954 5 0 Median 0.8092 0.77765 NaN 1 0 Median 1.0164 1.1104 9.8809 14 2 Median 1.2364 1.0945 16.205 4 0 Median 257630000 128630000 129000000 14010000 6439400 7570400 0 0 0 30679000 15600000 15079000 1181800 609580 572260 199390000 100610000 98783000 12364000 5372100 6991500 14609 2769 15207;15208 74734;74735;74736;74737;74738;74739;74740;74741;74742;74743;74744;74745;74746;74747;74748;74749;74750;74751;74752;74753;74754;74755;74756;74757;74758;74759;74760;74761;74762;74763;74764 75846;75847;75848;75849;75850;75851;75852;75853;75854;75855;75856;75857;75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868 75849 1487 23 IFVNNELNELYTGLK QRSTHIATKTFQALRIFVNNELNELYTGLK IFVNNELNELYTGLKTAQKFLRPGGRLVAL R I F L K T 0 0 3 0 0 0 2 1 0 1 3 1 0 1 0 0 1 0 1 1 0 0 15 0 1765.9251 A6NJ78 A6NJ78 290 304 METTL15 Probable methyltransferase-like protein 15 yes yes 2 0.00034722 56.094 By MS/MS By matching 1 1 1.2657 1.0757 1.4794 2 Median NaN NaN NaN 0 0 Median 1.2432 1.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2887 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1779700 762980 1016700 0 0 0 1437100 579670 857380 0 0 0 342650 183300 159350 0 0 0 0 0 0 14610 522 15209 74765;74766 75869;75870 75869 2 IFVNSNTDVAPFLR EVKDLASVSLKNPVRIFVNSNTDVAPFLRQ RIFVNSNTDVAPFLRQEFIRIRPNREGDRE R I F L R Q 1 1 2 1 0 0 0 0 0 1 1 0 0 2 1 1 1 0 0 2 0 0 14 0 1591.8358 B7Z6D5;Q96GQ7 B7Z6D5 392 405 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 7.689E-08 121.83 By matching By MS/MS 1 3 1.0155 1.0216 31.417 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1088 1.7404 NaN 1 0 Median 0.99908 1.0103 1.566 2 1 Median NaN NaN NaN 0 0 Median 14625000 7295900 7329100 0 0 0 0 0 0 0 0 0 132370 30034 102330 14493000 7265900 7226700 0 0 0 14611 635 15210 74767;74768;74769;74770 75871;75872;75873;75874;75875;75876 75871 6 IFYHPETTQLMILSASEATVK ENAHKDFKKAVGACRIFYHPETTQLMILSA TTQLMILSASEATVKRVNILSDMHLRSIRT R I F V K R 2 0 0 0 0 1 2 0 1 2 2 1 1 1 1 2 3 0 1 1 0 0 21 0 2378.2192 B4DXZ6;P51114;E7EU85;E9PFF5;C9JZE0;C9JY20;C9IZ22 B4DXZ6 146 166 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.0016032 37.379 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.97357 0.91247 14.511 4 Median 1.1043 1.123 NaN 1 0 Median 1.0542 0.91338 NaN 1 0 Median 0.85756 0.91157 NaN 1 1 Median 0.89911 0.78922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6004900 2898300 3106600 818710 363940 454760 1153300 494730 658570 3927700 1987800 1939900 105200 51842 53356 0 0 0 0 0 0 14612 608 15211 74771;74772;74773;74774 75877;75878 75877 2 IFYNQQNHYDGTTGK ERQVTVPNVPIRFTKIFYNQQNHYDGTTGK IFYNQQNHYDGTTGKFLCNIPGLYYFSYHI K I F G K F 0 0 2 1 0 2 0 2 1 1 0 1 0 1 0 0 2 0 2 0 0 0 15 0 1784.8118 CON__Q3Y5Z3 CON__Q3Y5Z3 130 144 yes yes 3 0.0019432 45.864 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490400 3490400 0 3490400 3490400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 14613 782 15212 74775 75879 75879 1 IFYPEIEEVQALDDTER EVKKGDRIAQLICERIFYPEIEEVQALDDT YPEIEEVQALDDTERGSGGFGSTGKN____ R I F E R G 1 1 0 2 0 1 4 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 17 0 2065.9844 H0YNW5;H0YKC5;P33316;A0A0C4DGL3 H0YNW5 140 156 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial yes no 2 1.4399E-13 113.83 By matching By MS/MS By matching 2 1 1 0.90803 0.85544 12.215 4 Median 0.88385 0.85544 3.6639 2 0 Median 0.89526 0.74528 NaN 1 0 Median 0.92098 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5657600 3051400 2606200 3183400 1701200 1482200 971020 481550 489470 1503200 868640 634550 0 0 0 0 0 0 0 0 0 14614 1190 15213 74776;74777;74778;74779 75880;75881 75881 2 IFYPETTDIYDR VIQWLNAMDEIGLPKIFYPETTDIYDRKNM LPKIFYPETTDIYDRKNMPRCIYCIHALSL K I F D R K 0 1 0 2 0 0 1 0 0 2 0 0 0 1 1 0 2 0 2 0 0 0 12 0 1531.7195 P46940;A0A0J9YXZ5 P46940 131 142 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.6046E-05 94.692 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.7847 0.68005 28.08 7 Median 0.68571 0.65683 45.318 2 0 Median 0.92703 0.79374 22.355 3 0 Plateau 0.83876 0.92959 NaN 1 0 Median 0.63749 0.52548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39033000 20234000 18800000 26720000 13787000 12932000 8771100 4548700 4222400 3426900 1824800 1602100 115410 72895 42513 0 0 0 0 0 0 14615 2350 15214 74780;74781;74782;74783;74784;74785;74786 75882;75883;75884;75885;75886 75882 5 IFYPETTDIYDRK VIQWLNAMDEIGLPKIFYPETTDIYDRKNM PKIFYPETTDIYDRKNMPRCIYCIHALSLY K I F R K N 0 1 0 2 0 0 1 0 0 2 0 1 0 1 1 0 2 0 2 0 0 0 13 1 1659.8144 P46940;A0A0J9YXZ5 P46940 131 143 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 5.52E-07 109.42 By MS/MS By MS/MS By MS/MS 3 2 2 1.0911 1.0796 28.416 7 Median 0.95673 0.951 26.333 3 0 Median 1.1396 1.0879 22.189 2 0 Median 1.2773 1.3911 35.854 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124420000 62663000 61758000 107070000 54803000 52262000 3964900 1512600 2452300 13391000 6347000 7044000 0 0 0 0 0 0 0 0 0 14616 2350 15215 74787;74788;74789;74790;74791;74792;74793 75887;75888;75889;75890;75891;75892;75893 75889 7 IFYPETTDVYDRK TVQWLRAMESIGLPKIFYPETTDVYDRKNI PKIFYPETTDVYDRKNIPRMIYCIHALSLY K I F R K N 0 1 0 2 0 0 1 0 0 1 0 1 0 1 1 0 2 0 2 1 0 0 13 1 1645.7988 E7EWC2;F5H7S7;Q13576;D6R939 E7EWC2 78 90 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 3 9.055E-05 74.987 By MS/MS 1 0.71553 0.72059 NaN 1 Median 0.71553 0.72059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7493200 4526400 2966800 7493200 4526400 2966800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14617 901 15216 74794 75894 75894 1 IFYQFLYNNNTR RKEKDTPNENRQKLRIFYQFLYNNNTRQQT KLRIFYQFLYNNNTRQQTEARDDLHCPWCT R I F T R Q 0 1 3 0 0 1 0 0 0 1 1 0 0 2 0 0 1 0 2 0 0 0 12 0 1591.7783 J3QQW9;Q15022 J3QQW9 405 416 SUZ12 Polycomb protein SUZ12 yes no 2 0.00024813 84.213 By MS/MS By MS/MS 1 1 1.0715 1.1406 23.304 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90148 0.96733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2737 1.3449 NaN 1 0 Median NaN NaN NaN 0 0 Median 7084100 3373200 3710900 0 0 0 0 0 0 3479100 1844500 1634500 0 0 0 3605100 1528700 2076400 0 0 0 14618 1344 15217 74795;74796 75895;75896;75897;75898 75896 4 IGADEEIDDFKGR DRSPEPTREQLDSGRIGADEEIDDFKGRSA GRIGADEEIDDFKGRSAEEVEEIKAEKEAK R I G G R S 1 1 0 3 0 0 2 2 0 2 0 1 0 1 0 0 0 0 0 0 0 0 13 1 1463.6892 Q8WUA2 Q8WUA2 191 203 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 3 0.00050022 51.726 By MS/MS 1 0.76148 0.85413 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76148 0.85413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10903000 5917600 4985300 0 0 0 0 0 0 10903000 5917600 4985300 0 0 0 0 0 0 0 0 0 14619 3486 15218 74797 75899;75900 75899 2 IGADFLAR RVGGVQSLGGTGALRIGADFLARWYNGTNN GGTGALRIGADFLARWYNGTNNKNTPVYVS R I G A R W 2 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 861.47085 P17174 P17174 115 122 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.0042476 82.671 By MS/MS By matching By matching 1 1 1 1.1869 1.186 2.9893 3 Median 1.1869 1.186 NaN 1 0 Median 1.3213 1.1384 NaN 1 0 Median 1.1135 1.2066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27083000 11885000 15198000 19744000 8496800 11247000 2627100 1049100 1578000 4711400 2338700 2372700 0 0 0 0 0 0 0 0 0 14620 2038 15219 74798;74799;74800 75901;75902 75901 2 IGADHVQSLLLK IRSVLDGPVLSNIDRIGADHVQSLLLKHCA IDRIGADHVQSLLLKHCAPVLAKLRPPPDN R I G L K H 1 0 0 1 0 1 0 1 1 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1292.7452 J3KR72;P49848 J3KR72 475 486 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 0.010147 37.191 By MS/MS 1 1.4463 1.5378 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4463 1.5378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3729800 1782200 1947700 0 0 0 0 0 0 3729800 1782200 1947700 0 0 0 0 0 0 0 0 0 14621 1323 15220 74801 75903 75903 1 IGAEVYHNLK MILPVGAANFREAMRIGAEVYHNLKNVIKE REAMRIGAEVYHNLKNVIKEKYGKDATNVG R I G L K N 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1142.6084 P06733;A0A2R8Y6G6;K7EM90 P06733 184 193 ENO1 Alpha-enolase;Enolase yes no 2 2.3263E-06 156.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 3 3 2 3 1.1652 1.0525 10.6 19 Median 1.2364 1.1225 6.2833 4 0 Median 1.1978 1.0091 5.9215 4 0 Median 1.1762 1.1238 5.0521 3 0 Plateau 1.1619 1.0508 13.553 3 1 Median 1.2172 1.2037 6.0079 2 0 Median 1.051 0.90631 10.944 3 0 Median 812380000 361650000 450730000 302720000 132150000 170570000 334450000 149450000 185000000 70076000 31341000 38735000 84643000 38593000 46050000 13700000 6869100 6831200 6795000 3244000 3550900 14622 1873 15221 74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812;74813;74814;74815;74816;74817;74818;74819;74820 75904;75905;75906;75907;75908;75909;75910;75911;75912;75913;75914;75915;75916;75917;75918;75919;75920;75921;75922;75923;75924;75925;75926;75927;75928;75929;75930;75931;75932;75933 75924 30 IGAEYSSNVPVWSLR GGYLGGFDGNFLWNRIGAEYSSNVPVWSLR IGAEYSSNVPVWSLRLLPALAGALSVPMAY R I G L R L 1 1 1 0 0 0 1 1 0 1 1 0 0 0 1 3 0 1 1 2 0 0 15 0 1676.8522 Q9Y6A1;Q5JSZ6;Q5JT07 Q9Y6A1 91 105 POMT1 Protein O-mannosyl-transferase 1 yes no 2 0.0014686 57.019 By MS/MS 1 0.5896 0.65031 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5896 0.65031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697900 1567000 1130900 0 0 0 0 0 0 2697900 1567000 1130900 0 0 0 0 0 0 0 0 0 14623 4485 15222 74821 75934 75934 1 IGAFGYMECSAK QEPVKPEEGRDMANRIGAFGYMECSAKTKD ANRIGAFGYMECSAKTKDGVREVFEMATRA R I G A K T 2 0 0 0 1 0 1 2 0 1 0 1 1 1 0 1 0 0 1 0 0 0 12 0 1332.5842 P61586 P61586 151 162 RHOA Transforming protein RhoA yes yes 2 7.8881E-05 93.058 By MS/MS By MS/MS 1 4 1.2174 1.0373 9.9052 5 Median 0.96851 0.91516 NaN 1 0 Median 1.359 1.0417 9.992 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40197000 17968000 22229000 9033000 4748800 4284200 31164000 13219000 17944000 0 0 0 0 0 0 0 0 0 0 0 0 14624 2559 15223;15224 74822;74823;74824;74825;74826 75935;75936;75937;75938;75939;75940;75941 75936 1235 7 IGALEGYR TIKNDPSLPEPKCVKIGALEGYRGQRVKVF PEPKCVKIGALEGYRGQRVKVFGWVHRLRR K I G Y R G 1 1 0 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 877.46577 O43776;K7EQ35;K7EIU7;K7EPK2;K7EMQ6 O43776 117 124 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2 0.0023729 104.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1.2313 1.063 20.897 5 Median 0.77618 0.73092 NaN 1 1 Median 1.2313 1.063 NaN 1 0 Median 1.2779 1.2737 NaN 1 0 Median 1.1752 1.0041 11.89 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99806000 48588000 51218000 33892000 19073000 14819000 38775000 16824000 21952000 15641000 7023000 8618000 11498000 5668300 5829500 0 0 0 0 0 0 14625 1589 15225 74827;74828;74829;74830;74831;74832 75942;75943;75944;75945;75946;75947 75942 6 IGALQGAVDR GIESLEGVLQMMQTRIGALQGAVDRIKAKI MMQTRIGALQGAVDRIKAKIVEPYNKIVAR R I G D R I 2 1 0 1 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 998.55089 Q9UP83;U3KQU7 Q9UP83 138 147 COG5 Conserved oligomeric Golgi complex subunit 5 yes no 2 0.0013065 66.692 By MS/MS 1 1.9752 1.9469 NaN 1 Median 1.9752 1.9469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2235100 887400 1347800 2235100 887400 1347800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14626 4354 15226 74833 75948 75948 1 IGAMLAYTPLDEK SQVYGAPHLLRLFVRIGAMLAYTPLDEKSL VRIGAMLAYTPLDEKSLALLLNYLHDFLKY R I G E K S 2 0 0 1 0 0 1 1 0 1 2 1 1 0 1 0 1 0 1 0 0 0 13 0 1420.7272 B3KTM8;H0YLJ3;Q9UBU8;Q15014;A0A0A0MT59 B3KTM8 295 307 MORF4L1;MORF4L2 Mortality factor 4-like protein 1;Mortality factor 4-like protein 2 no no 2 5.7858E-05 86.898 By MS/MS By matching 2 1 0.9018 0.85527 7.7146 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86543 0.86282 10.886 2 0 Median 1.0141 0.85527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22934000 11979000 10955000 0 0 0 0 0 0 21831000 11459000 10372000 1103100 520600 582540 0 0 0 0 0 0 14627 585;2912 15227 74834;74835;74836 75949;75950;75951;75952 75952 4 IGASFLQR RFVTVQTISGTGALRIGASFLQRFFKFSRD SGTGALRIGASFLQRFFKFSRDVFLPKPTW R I G Q R F 1 1 0 0 0 1 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 8 0 890.4974 P00505 P00505 140 147 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0024312 135.87 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 1 1.1501 1.1956 26.141 10 Median 1.0114 0.98614 9.6961 2 0 Median 1.4274 1.1859 42.049 3 0 Median 1.1447 1.2058 0.04918 2 0 Median 1.2882 1.0578 24.987 2 0 Median 1.3962 1.5005 NaN 1 0 Median NaN NaN NaN 0 0 Median 310650000 140980000 169670000 117060000 59509000 57549000 151230000 61514000 89715000 31795000 15403000 16392000 8710000 3832000 4878100 1855600 719770 1135800 0 0 0 14628 1823 15228 74837;74838;74839;74840;74841;74842;74843;74844;74845;74846 75953;75954;75955;75956;75957;75958;75959;75960 75958 8 IGASLADVDPMQLDSSVR FRKDELKGIYKDRMKIGASLADVDPMQLDS SLADVDPMQLDSSVRFDSVGGLSNHIAALK K I G V R F 2 1 0 3 0 1 0 1 0 1 2 0 1 0 1 3 0 0 0 2 0 0 18 0 1872.9251 Q6PL18 Q6PL18 407 424 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 2.0376E-06 82.362 By MS/MS 1 0.64455 0.66754 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64455 0.66754 NaN 1 0 Median NaN NaN NaN 0 0 Median 7379700 4153900 3225900 0 0 0 0 0 0 0 0 0 0 0 0 7379700 4153900 3225900 0 0 0 14629 3177 15229 74847 75961 75961 1 IGASTLLSDIER KEELGDEWLKPELFRIGASTLLSDIERQIY LFRIGASTLLSDIERQIYHHVTGRYAAYHD R I G E R Q 1 1 0 1 0 0 1 1 0 2 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1273.6878 Q9Y315;E9PPM8;G3V158 Q9Y315 288 299 DERA Deoxyribose-phosphate aldolase yes no 2 0.00016877 86.624 By MS/MS By MS/MS 1 1 1.1051 0.97932 8.6168 2 Median 0.97591 0.92143 NaN 1 0 Median 1.2514 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12516000 5903500 6612500 5311000 2791400 2519600 7205000 3112100 4092800 0 0 0 0 0 0 0 0 0 0 0 0 14630 4402 15230 74848;74849 75962;75963;75964 75963 3 IGAVEEELNR KLTVQEEQIVELIEKIGAVEEELNRVTELF ELIEKIGAVEEELNRVTELFMDNKNELDQC K I G N R V 1 1 1 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1128.5775 P52732 P52732 426 435 KIF11 Kinesin-like protein KIF11 yes yes 2 0.0004183 99.802 By MS/MS 1 1.0355 0.86928 NaN 1 Median NaN NaN NaN 0 0 Median 1.0355 0.86928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7207700 3251300 3956400 0 0 0 7207700 3251300 3956400 0 0 0 0 0 0 0 0 0 0 0 0 14631 2454 15231 74850 75965;75966 75965 2 IGCIITAR SADSKPIDVSRLDLRIGCIITARKHPDADS VSRLDLRIGCIITARKHPDADSLYVEEVDV R I G A R K 1 1 0 0 1 0 0 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 8 0 902.50077 Q12904 Q12904 159 166 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 2 0.019541 47.082 By MS/MS 1 1.6368 1.4128 NaN 1 Median NaN NaN NaN 0 0 Median 1.6368 1.4128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2975900 1109000 1866900 0 0 0 2975900 1109000 1866900 0 0 0 0 0 0 0 0 0 0 0 0 14632 2768 15232 74851 75967 75967 1 IGDEDVGR KKGPKVTVKVYFDLRIGDEDVGRVIFGLFG KVYFDLRIGDEDVGRVIFGLFGKTVPKTVD R I G G R V 0 1 0 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 859.40356 P23284 P23284 52 59 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.0030883 101.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 4 1.3703 1.1175 7.7035 9 Median 1.0329 0.99805 4.8509 2 0 Median 1.2739 1.0771 NaN 1 0 Median 1.069 1.0263 NaN 1 0 Median 1.3703 1.1406 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4705 1.1595 4.2631 4 0 Median 78678000 36220000 42458000 9186300 4480000 4706300 4649200 2115700 2533500 49798000 23323000 26475000 12537000 5235500 7301600 0 0 0 2506900 1065800 1441200 14633 2109 15233 74852;74853;74854;74855;74856;74857;74858;74859;74860 75968;75969;75970;75971;75972;75973;75974;75975;75976 75971 9 IGDELDSNMELQR PQDASTKKLSECLKRIGDELDSNMELQRMI KRIGDELDSNMELQRMIAAVDTDSPREVFF R I G Q R M 0 1 1 2 0 1 2 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 13 0 1518.6984 Q07812;K4JQN1 Q07812 66 78 BAX Apoptosis regulator BAX yes no 2 2.9415E-15 185.77 By MS/MS By MS/MS 2 3 0.99307 0.84497 18.114 5 Median 0.83063 0.79884 3.0767 2 0 Median 1.2718 1.054 17.237 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68332000 34799000 33534000 52156000 28145000 24011000 16176000 6653800 9522600 0 0 0 0 0 0 0 0 0 0 0 0 14634 2732 15234;15235 74861;74862;74863;74864;74865 75977;75978;75979;75980;75981;75982;75983 75981 1416 7 IGDFGLVTSLK LKPSNIFLVDTKQVKIGDFGLVTSLKNDGK KQVKIGDFGLVTSLKNDGKRTRSKGTLRYM K I G L K N 0 0 0 1 0 0 0 2 0 1 2 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 P19525 P19525 430 440 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00042157 70.028 By MS/MS By MS/MS By matching By matching By matching 1 2 3 1 1 1.0832 1.0135 78.885 8 Median 1.0142 0.96818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1126 1.1612 9.4528 2 0 Median 1.2974 1.0608 8.4155 3 0 Median 0.4899 0.5313 NaN 1 0 Median 0.13076 0.11648 NaN 1 0 Median 28057000 14422000 13635000 5815500 3253700 2561800 0 0 0 15482000 7238800 8242900 4048800 1932600 2116200 1508000 900040 607940 1202700 1097000 105720 14635 2067 15236 74866;74867;74868;74869;74870;74871;74872;74873 75984;75985;75986;75987 75986 4 IGDKEGALTAFR EIRDAMMAKAEYLCRIGDKEGALTAFRKTY LCRIGDKEGALTAFRKTYDKTVALGHRLDI R I G F R K 2 1 0 1 0 0 1 2 0 1 1 1 0 1 0 0 1 0 0 0 0 0 12 1 1276.6776 Q15008;C9J0E9 Q15008 114 125 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2;3 2.2742E-05 102.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 1 1 1 1.1218 1.1306 63.464 10 Median 1.0181 1.2407 13.17 4 0 Linear 1.205 1.1422 14.313 3 0 Median 1.3125 1.4934 NaN 1 0 Median 1.8011 1.574 NaN 1 0 Median 0.16021 0.17069 NaN 1 0 Median NaN NaN NaN 0 0 Median 101910000 47012000 54895000 48551000 20189000 28362000 36787000 18022000 18765000 8951800 3481000 5470800 2450200 864490 1585700 5167100 4454600 712550 0 0 0 14636 2911 15237 74874;74875;74876;74877;74878;74879;74880;74881;74882;74883 75988;75989;75990;75991;75992;75993;75994;75995;75996 75988 9 IGDKEGALTAFRK EIRDAMMAKAEYLCRIGDKEGALTAFRKTY CRIGDKEGALTAFRKTYDKTVALGHRLDIV R I G R K T 2 1 0 1 0 0 1 2 0 1 1 2 0 1 0 0 1 0 0 0 0 0 13 2 1404.7725 Q15008;C9J0E9 Q15008 114 126 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 3 0.0012585 42.789 By MS/MS 1 1.2809 1.3561 NaN 1 Median 1.2809 1.3561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5586100 2355500 3230600 5586100 2355500 3230600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14637 2911 15238 74884 75997;75998 75998 2 IGDLGLATLK KCDNIFITGPTGSVKIGDLGLATLKRASFA TGSVKIGDLGLATLKRASFAKSVIGTPEFM K I G L K R 1 0 0 1 0 0 0 2 0 1 3 1 0 0 0 0 1 0 0 0 0 0 10 0 999.59645 F5GWT4;Q9H4A3;F6UYG0 F5GWT4 366 375 WNK1 Serine/threonine-protein kinase WNK1 no no 2 0.0013144 66.621 By MS/MS By matching 4 1 0.87968 0.75978 62.509 5 Plateau 0.96555 0.84197 15.101 4 0 Linear 0.18486 0.20973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8133200 4491600 3641600 7843000 4244800 3598200 290230 246820 43413 0 0 0 0 0 0 0 0 0 0 0 0 14638 1001 15239 74885;74886;74887;74888;74889 75999;76000 76000 2 IGDLQAFQGHGAGNLAGLK ELPAQKWWHTGALYRIGDLQAFQGHGAGNL QAFQGHGAGNLAGLKGRLDYLSSLKVKGLV R I G L K G 3 0 1 1 0 2 0 5 1 1 3 1 0 1 0 0 0 0 0 0 0 0 19 0 1865.9748 F5GZS6;J3KPF3;P08195;H0YFS2 F5GZS6 196 214 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.00013283 42.041 By MS/MS By matching 1 1 1.4022 1.2857 17.131 2 Median 1.553 1.4512 NaN 1 0 Median 1.2661 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6094400 2508700 3585800 5569100 2233100 3336100 525310 275590 249720 0 0 0 0 0 0 0 0 0 0 0 0 14639 1016 15240 74890;74891 76001 76001 1 IGDTSVSYK SEQDQPMGGWEMIRKIGDTSVSYKYTSRYV WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI K I G Y K Y 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 1 0 1 1 0 0 9 0 968.48148 P20700 P20700 475 483 LMNB1 Lamin-B1 yes yes 2 0.0017261 78.334 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 4 1.1111 1.0152 30.499 10 Median NaN NaN NaN 0 0 Median 1.3881 1.4203 NaN 1 0 Median 0.80706 0.83004 4.2108 2 2 Median 0.79124 0.67651 NaN 1 1 Median 0.83919 0.82732 21.79 2 2 Median 1.6144 1.3542 16.566 4 2 Median 68113000 34258000 33856000 0 0 0 235110 80315 154800 16060000 9041100 7018600 1500700 820540 680150 31407000 16746000 14661000 18911000 7569800 11341000 14640 2084 15241 74892;74893;74894;74895;74896;74897;74898;74899;74900;74901 76002;76003;76004;76005;76006;76007;76008;76009;76010;76011 76010 10 IGDWQHAQNIMDQMPPYYAASHK PPDNQKLGLLEALLKIGDWQHAQNIMDQMP NIMDQMPPYYAASHKLIALAICKLIHITIE K I G H K L 3 0 1 2 0 3 0 1 2 2 0 1 2 0 2 1 0 1 2 0 0 0 23 0 2700.2213 Q8NI27;A0A0C4DG98 Q8NI27 355 377 THOC2 THO complex subunit 2 yes no 4 0.0095825 19.378 By MS/MS 1 0.7526 0.8381 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7526 0.8381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2248900 1237100 1011800 0 0 0 0 0 0 2248900 1237100 1011800 0 0 0 0 0 0 0 0 0 14641 3448 15242 74902 76012 76012 1 IGDYVQQHGGVSLVEQLLQDPK EMVGEKGLAPEVADRIGDYVQQHGGVSLVE HGGVSLVEQLLQDPKLSQNKQALEGLGDLK R I G P K L 0 0 0 2 0 4 1 3 1 1 3 1 0 0 1 1 0 0 1 3 0 0 22 0 2422.2492 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2 P12081 267 288 HARS Histidine--tRNA ligase, cytoplasmic yes no 3 1.5741E-15 97.253 By matching By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1.0343 0.9148 17.399 7 Median 1.0545 0.99421 NaN 1 0 Median 0.98438 0.83331 NaN 1 0 Median 0.82555 0.79418 19.996 2 0 Median 1.1839 1.0205 18.87 2 0 Median NaN NaN NaN 0 0 Median 1.2877 1.0806 NaN 1 0 Median 133780000 66009000 67768000 5358200 2017200 3341000 17775000 8600800 9173900 108210000 54406000 53804000 1237100 579760 657310 0 0 0 1196800 404720 792050 14642 1975 15243 74903;74904;74905;74906;74907;74908;74909 76013;76014;76015;76016;76017 76014 5 IGDYYLR HEFEVKYECLAEEIKIGDYYLRLLLEEDEN ECLAEEIKIGDYYLRLLLEEDENEESGSIK K I G L R L 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 898.45487 O75165 O75165 827 833 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.047302 41.502 By MS/MS By matching 1 1 1.4996 1.3345 6.5047 2 Median NaN NaN NaN 0 0 Median 1.6749 1.3973 NaN 1 0 Median 1.3427 1.2745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35398000 14103000 21295000 0 0 0 1550600 587240 963330 33848000 13516000 20332000 0 0 0 0 0 0 0 0 0 14643 1653 15244 74910;74911 76018 76018 1 IGEDYVK LLLCNPGLAELIAEKIGEDYVKDLSQLTKL LAELIAEKIGEDYVKDLSQLTKLHSFLGDD K I G V K D 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 822.41233 P06737;E9PK47 P06737 508 514 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.066709 36.185 By matching By MS/MS 1 2 1.5291 1.3527 9.3517 3 Plateau 1.3323 1.3469 NaN 1 0 Median 1.4235 1.2461 11.602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5802600 2274600 3528000 1079200 441690 637480 4723500 1833000 2890500 0 0 0 0 0 0 0 0 0 0 0 0 14644 1874 15245 74912;74913;74914 76019 76019 1 IGEDYVKDLSQLTK LLLCNPGLAELIAEKIGEDYVKDLSQLTKL KIGEDYVKDLSQLTKLHSFLGDDVFLRELA K I G T K L 0 0 0 2 0 1 1 1 0 1 2 2 0 0 0 1 1 0 1 1 0 0 14 1 1607.8407 P06737;E9PK47 P06737 508 521 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 0.0031347 64.439 By MS/MS By matching By matching 2 1 1 0.98447 1.0648 22.687 4 Median 1.0331 1.0894 15.356 2 0 Median NaN NaN NaN 0 0 Median 1.0462 1.1602 NaN 1 0 Median 0.81193 0.73579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8067200 4007900 4059400 7123800 3594900 3529000 0 0 0 866090 374720 491360 77273 38237 39036 0 0 0 0 0 0 14645 1874 15246 74915;74916;74917;74918 76020;76021 76021 2 IGEEEIQKPEEK RTDIFGVEETAIGKKIGEEEIQKPEEKVTW GKKIGEEEIQKPEEKVTWDGHSGSMARTQQ K I G E K V 0 0 0 0 0 1 5 1 0 2 0 2 0 0 1 0 0 0 0 0 0 0 12 1 1427.7144 Q15459 Q15459 488 499 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 0.00069958 79.974 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 3 0.85736 0.89443 20.598 11 Median 1.0269 1.087 NaN 1 0 Median 0.61104 0.57042 NaN 1 0 Median 0.8538 0.97662 NaN 1 0 Median 0.93896 0.89443 15.234 3 0 Median 0.84376 0.94528 2.2966 2 0 Median 0.85657 0.77286 10.638 3 0 Median 31451000 15445000 16006000 1666200 792160 874080 3002100 1821000 1181100 1556200 717540 838660 7918600 3990200 3928400 11944000 5396200 6548300 5363400 2728100 2635400 14646 2954 15247 74919;74920;74921;74922;74923;74924;74925;74926;74927;74928;74929;74930 76022;76023;76024;76025;76026;76027;76028;76029;76030;76031;76032;76033 76029 12 IGEEFLTDLSQLK LLLCNPGLADTIVEKIGEEFLTDLSQLKKL EKIGEEFLTDLSQLKKLLPLVSDEVFIRDV K I G L K K 0 0 0 1 0 1 2 1 0 1 3 1 0 1 0 1 1 0 0 0 0 0 13 0 1491.7821 P11216 P11216 508 520 PYGB Glycogen phosphorylase, brain form yes yes 2 0.0047784 58.223 By MS/MS 1 1.2052 1.0535 NaN 1 Median NaN NaN NaN 0 0 Median 1.2052 1.0535 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5474600 2543400 2931200 0 0 0 5474600 2543400 2931200 0 0 0 0 0 0 0 0 0 0 0 0 14647 1956 15248 74931 76034 76034 1 IGEEFLTDLSQLKK LLLCNPGLADTIVEKIGEEFLTDLSQLKKL KIGEEFLTDLSQLKKLLPLVSDEVFIRDVA K I G K K L 0 0 0 1 0 1 2 1 0 1 3 2 0 1 0 1 1 0 0 0 0 0 14 1 1619.877 P11216 P11216 508 521 PYGB Glycogen phosphorylase, brain form yes yes 3 0.076535 6.1628 By MS/MS 1 1.3064 1.3757 NaN 1 Median 1.3064 1.3757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4454300 1994800 2459500 4454300 1994800 2459500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14648 1956 15249 74932 76035 76035 1 IGEEQSAEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 3 0 0 2 0 1 5 4 2 2 2 1 0 1 2 1 1 0 0 0 0 0 27 0 2846.3359 Q16576;E9PC52;Q5JNZ6 Q16576 349 375 RBBP7 Histone-binding protein RBBP7 yes no 3;4 1.1471E-19 79.875 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 0.59507 0.56763 23.566 7 Median 0.52135 0.48578 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5955 0.56893 4.097 2 1 Median 0.90483 0.80117 31.556 2 0 Median 0.57764 0.55167 4.0326 2 0 Median NaN NaN NaN 0 0 Median 152090000 102880000 49208000 9437500 5436400 4001100 0 0 0 128890000 89386000 39504000 2195400 1064600 1130800 11566000 6994400 4571700 0 0 0 14649 2990 15250 74933;74934;74935;74936;74937;74938;74939 76036;76037;76038;76039;76040 76040 5 IGEEQSPEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 2 0 0 2 0 1 5 4 2 2 2 1 0 1 3 1 1 0 0 0 0 0 27 0 2872.3515 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5 Q09028 350 376 RBBP4 Histone-binding protein RBBP4 yes no 3;4 8.3258E-28 88.541 By matching By MS/MS By MS/MS By MS/MS 1 4 3 2 0.61721 0.57327 13.395 10 Median 0.6709 0.6309 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60214 0.57327 16.028 4 0 Median 0.77682 0.6847 11.337 3 0 Median 0.55482 0.52946 8.8287 2 1 Median NaN NaN NaN 0 0 Median 272720000 165410000 107310000 6039600 3047400 2992200 0 0 0 223990000 132830000 91153000 10652000 6541600 4110600 32042000 22992000 9049700 0 0 0 14650 2746 15251 74940;74941;74942;74943;74944;74945;74946;74947;74948;74949 76041;76042;76043;76044;76045;76046;76047;76048;76049;76050 76043 10 IGEGTYGTVFK ______________________________ KLEKIGEGTYGTVFKAKNRETHEIVALKRV K I G F K A 0 0 0 0 0 0 1 3 0 1 0 1 0 1 0 0 2 0 1 1 0 0 11 0 1170.5921 Q00535 Q00535 10 20 CDK5 Cyclin-dependent-like kinase 5 yes yes 2 0.0021541 55.064 By MS/MS By MS/MS By matching 2 1 1 1.306 1.2467 20.784 4 Median 1.0253 1.0164 24.519 2 0 Median 1.6147 1.3544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5286 1.2857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39480000 20338000 19142000 34227000 18249000 15978000 4958300 1979400 2978900 0 0 0 294870 109280 185590 0 0 0 0 0 0 14651 2675 15252 74950;74951;74952;74953 76051;76052;76053 76052 3 IGEGTYGVVYK ______________________________ KIEKIGEGTYGVVYKGRHKTTGQVVAMKKI K I G Y K G 0 0 0 0 0 0 1 3 0 1 0 1 0 0 0 0 1 0 2 2 0 0 11 0 1184.6077 G3V5T9;P24941;E7ESI2;G3V317;Q00526;K7ELV5;P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 10 20 CDK2;CDK3;CDK1;CDC2 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent kinase 1 no no 2 0.00013837 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1 1.0761 0.9404 29.02 8 Median 1.041 0.95993 8.834 2 0 Median 0.98653 0.82456 5.0918 2 0 Median 1.0379 1.0277 15.634 2 0 Median 1.152 0.9611 NaN 1 0 Median 1.9591 2.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median 350890000 159350000 191540000 187470000 84146000 103330000 78441000 37690000 40751000 49405000 22298000 27106000 29955000 13155000 16800000 5540500 2048600 3491900 77329 15945 61384 14652 1871;1120 15253 74954;74955;74956;74957;74958;74959;74960;74961;74962 76054;76055;76056;76057;76058;76059;76060 76058 7 IGEHMEEHGIK RSILLRGFDQDMANKIGEHMEEHGIKFIRQ MANKIGEHMEEHGIKFIRQFVPIKVEQIEA K I G I K F 0 0 0 0 0 0 3 2 2 2 0 1 1 0 0 0 0 0 0 0 0 0 11 0 1278.6027 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9 E9PIR7 236 246 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2;3 0.00019806 74.92 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1024 0.93467 25.473 5 Median 1.4654 1.4156 NaN 1 0 Median 1.0772 0.91652 2.7738 2 0 Median 1.4113 1.4122 NaN 1 0 Median 0.96065 0.84539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15919000 7420700 8498400 2173200 760580 1412600 13200000 6397700 6802400 335510 146240 189270 210220 116110 94108 0 0 0 0 0 0 14653 11 15254 74963;74964;74965;74966;74967 76061;76062;76063;76064;76065;76066 76066 6 IGEHTPSALAIMENANVLAR KKDGADFAKWRCVLKIGEHTPSALAIMENA PSALAIMENANVLARYASICQQVGLQNGIV K I G A R Y 4 1 2 0 0 0 2 1 1 2 2 0 1 0 1 1 1 0 0 1 0 0 20 0 2106.0892 J3KPS3;P04075;H3BQN4;H3BPS8;H3BR04;H3BU78 J3KPS3 154 173 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 6.079E-39 201.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 3 2 2 0.98349 0.95568 61.571 18 Median 0.98808 0.96899 58.972 6 0 Median 0.89796 0.76748 84.821 5 0 Median 0.98849 1.0855 5.2661 3 0 Median 1.1327 0.96783 22.433 2 0 Median 1.1215 1.1662 31.262 2 0 Median NaN NaN NaN 0 0 Median 648750000 319690000 329070000 341060000 170110000 170950000 131480000 65424000 66051000 169950000 81055000 88890000 3272200 1586700 1685500 2995800 1510500 1485400 0 0 0 14654 1310 15255;15256 74968;74969;74970;74971;74972;74973;74974;74975;74976;74977;74978;74979;74980;74981;74982;74983;74984;74985 76067;76068;76069;76070;76071;76072;76073;76074;76075;76076;76077;76078;76079;76080;76081;76082;76083;76084;76085;76086;76087;76088;76089;76090;76091;76092;76093;76094 76078 433 28 IGEIATGSPVSTELGHVLIEISSTHK AMILAGKAYYDGVAKIGEIATGSPVSTELG TELGHVLIEISSTHKKLNESLDENFKKFHK K I G H K K 1 0 0 0 0 0 3 3 2 4 2 1 0 0 1 4 3 0 0 2 0 0 26 0 2674.4178 Q9UHR4 Q9UHR4 58 83 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 4 0.063081 6.2273 By MS/MS 1 0.98645 0.85171 NaN 1 Median NaN NaN NaN 0 0 Median 0.98645 0.85171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1253200 679600 573650 0 0 0 1253200 679600 573650 0 0 0 0 0 0 0 0 0 0 0 0 14655 4281 15257 74986 76095 76095 1 IGELFALR AGKKVKLSHEEVMQKIGELFALRHRINLSS HEEVMQKIGELFALRHRINLSSDFLITPDF K I G L R H 1 1 0 0 0 0 1 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 917.53345 A0A087WXU0;A0A2R8Y4J4;Q9NWS8 A0A087WXU0 183 190 RMND1 Required for meiotic nuclear division protein 1 homolog yes no 2 0.0048619 79.116 By MS/MS 1 1.1962 1.144 NaN 1 Median 1.1962 1.144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3506600 1299900 2206700 3506600 1299900 2206700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14656 71 15258 74987 76096;76097 76097 2 IGELFSK LLQTFRSSRLMDEFKIGELFSKFYGELALK SRLMDEFKIGELFSKFYGELALKKKIPDTV K I G S K F 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 7 0 792.43815 P78527;F5GX40 P78527 149 155 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0081211 94.006 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34500000 0 34500000 6512100 0 6512100 0 0 0 23986000 0 23986000 4001500 0 4001500 0 0 0 0 0 0 14657 2647 15259 74988;74989;74990 76098;76099;76100 76099 3 IGEQAEAMFGVGK APAFDSTTANMNLDRIGEQAEAMFGVGKTS DRIGEQAEAMFGVGKTSSMLEVDDEGGRMF R I G G K T 2 0 0 0 0 1 2 3 0 1 0 1 1 1 0 0 0 0 0 1 0 0 13 0 1335.6493 Q14573 Q14573 1028 1040 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 0.0010367 74.841 By MS/MS 1 1.0305 1.031 NaN 1 Median 1.0305 1.031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8655700 4808800 3847000 8655700 4808800 3847000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14658 2883 15260 74991 76101 76101 1 IGEVDVEQHTLAK LGRPLPLHFLRRASKIGEVDVEQHTLAKYL SKIGEVDVEQHTLAKYLMELTMLDYDMVHF K I G A K Y 1 0 0 1 0 1 2 1 1 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1437.7464 P14635;E9PC90;H0YA62 P14635 312 324 CCNB1 G2/mitotic-specific cyclin-B1 yes no 2;3 2.3185E-07 113.63 By MS/MS By MS/MS 4 3 1.0346 0.94551 21.023 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3449 1.2828 18.454 3 0 Plateau 1.0747 0.95011 17.293 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69691000 26939000 42752000 0 0 0 0 0 0 38884000 14048000 24836000 30807000 12891000 17916000 0 0 0 0 0 0 14659 2007 15261 74992;74993;74994;74995;74996;74997;74998 76102;76103;76104;76105;76106;76107;76108;76109;76110;76111;76112 76109 11 IGEVWASKEPINSTTPFNSSK TVLTRSVFINNVLSKIGEVWASKEPINSTT SKEPINSTTPFNSSKIEEPSPIVYSLPAPE K I G S K I 1 0 2 0 0 0 2 1 0 2 0 2 0 1 2 4 2 1 0 1 0 0 21 1 2291.1434 Q8WYP5 Q8WYP5 1062 1082 AHCTF1 Protein ELYS yes yes 3 6.3811E-09 55.127 By MS/MS 2 0.67832 0.77708 0.97929 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67832 0.77708 0.97929 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19455000 11523000 7931200 0 0 0 0 0 0 19455000 11523000 7931200 0 0 0 0 0 0 0 0 0 14660 3524 15262 74999;75000 76113;76114;76115 76115 3 IGEWELIQESGVPLKPLFGPGYTGIR TDKTMTELEIDMNQRIGEWELIQESGVPLK VPLKPLFGPGYTGIRNLGNSCYLNSVVQVL R I G I R N 0 1 0 0 0 1 3 5 0 3 3 1 0 1 3 1 1 1 1 1 0 0 26 1 2855.5222 P45974 P45974 304 329 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 3 0.012569 17.647 By MS/MS By matching By matching 3 1 1 0.58068 0.5985 52.841 5 Median 0.57489 0.5985 6.8107 3 0 Plateau 0.74125 0.71467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7271 1.9245 NaN 1 0 Median NaN NaN NaN 0 0 Median 9815900 5594700 4221300 8956000 5234800 3721200 431870 223570 208300 0 0 0 0 0 0 428080 136300 291780 0 0 0 14661 2332 15263 75001;75002;75003;75004;75005 76116;76117 76117 2 IGEYLEK YIQCIAAISRQAGHRIGEYLEKIIPLVVKF ISRQAGHRIGEYLEKIIPLVVKFCNVDDDE R I G E K I 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 7 0 850.44363 Q86VP6;H0YH27 Q86VP6 249 255 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.0038136 102.71 By MS/MS By MS/MS By MS/MS 1 1 1 1.2728 1.2019 15.165 3 Median NaN NaN NaN 0 0 Median 1.2728 1.0677 NaN 1 0 Median 1.1243 1.2019 NaN 1 1 Median 1.6821 1.4427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61707000 26577000 35131000 0 0 0 48928000 20901000 28027000 9575600 4323100 5252500 3203800 1352300 1851500 0 0 0 0 0 0 14662 3288 15264 75006;75007;75008 76118;76119;76120;76121 76120 4 IGFDVVTLSGTR VDGFYTEEVRQGGRRIGFDVVTLSGTRGPL GRRIGFDVVTLSGTRGPLSRVGLEPPPGKR R I G T R G 0 1 0 1 0 0 0 2 0 1 1 0 0 1 0 1 2 0 0 2 0 0 12 0 1263.6823 Q5TDF0;Q9BSD7 Q5TDF0 48 59 NTPCR Cancer-related nucleoside-triphosphatase yes no 2 3.9018E-06 106.29 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.4076 1.3238 97.263 4 Median 1.74 1.6555 NaN 1 0 Median 1.8942 1.6019 NaN 1 0 Median 1.1387 1.094 NaN 1 0 Median 0.2362 0.2115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85319000 31992000 53327000 62749000 21511000 41238000 8358400 3976300 4382000 13952000 6313800 7638200 259450 190300 69154 0 0 0 0 0 0 14663 3102 15265 75009;75010;75011;75012 76122;76123;76124;76125 76122 4 IGFEEKDIAANEENRK KKKQQDVLGFLEANKIGFEEKDIAANEENR GFEEKDIAANEENRKWMRENVPENSRPATG K I G R K W 2 1 2 1 0 0 4 1 0 2 0 2 0 1 0 0 0 0 0 0 0 0 16 2 1861.917 O75368 O75368 32 47 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 3 0.0063623 42.338 By MS/MS By matching By MS/MS 1 1 1 1.1398 1.1528 20.2 2 Median NaN NaN NaN 0 0 Median 1.4671 1.3298 NaN 1 0 Median 0.88548 0.99932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12196000 6105700 6090600 0 0 0 9042100 4285200 4756900 3154200 1820500 1333700 0 0 0 0 0 0 0 0 0 14664 1663 15266 75013;75014;75015 76126;76127 76126 1 IGFFNQQYAEQLR LTPTHGEMRKNHRLKIGFFNQQYAEQLRME LKIGFFNQQYAEQLRMEETPTEYLQRGFNL K I G L R M 1 1 1 0 0 3 1 1 0 1 1 0 0 2 0 0 0 0 1 0 0 0 13 0 1612.7998 Q8NE71;H0YGW7 Q8NE71 690 702 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 4.8234E-07 123.63 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 5 1 1.1857 1.0767 17.125 11 Median 0.94309 0.91734 22.653 2 1 Median 0.83679 0.75856 NaN 1 0 Median 1.2459 1.2418 4.2521 2 0 Median 1.2351 1.0491 10.668 5 0 Median 1.0147 1.0776 NaN 1 0 Median NaN NaN NaN 0 0 Median 48142000 21549000 26593000 15260000 7415500 7844600 880750 481670 399080 22122000 9555700 12567000 7672800 3307600 4365200 2205800 788440 1417400 0 0 0 14665 3427 15267 75016;75017;75018;75019;75020;75021;75022;75023;75024;75025;75026 76128;76129;76130;76131;76132;76133 76131 6 IGFFQGDIR FERVVECVMLCHGAKIGFFQGDIRLLMDDL LCHGAKIGFFQGDIRLLMDDLKVLQPTVFP K I G I R L 0 1 0 1 0 1 0 2 0 2 0 0 0 2 0 0 0 0 0 0 0 0 9 0 1051.5451 E7EPM6;P33121;B7Z3Z9;D6RER0;H0Y9Z9 E7EPM6 307 315 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 2 0.046568 31.934 By MS/MS By matching By matching 1 1 1 1.2599 1.2229 21.058 3 Median 1.2599 1.2229 NaN 1 0 Median 1.5874 1.376 NaN 1 0 Median 0.87343 0.91399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7097800 3004000 4093800 3390600 1486800 1903800 2548800 1029900 1518900 1158300 487340 670980 0 0 0 0 0 0 0 0 0 14666 871 15268 75027;75028;75029 76134 76134 1 IGFIEEVK ENKSVKMMTQKGLYRIGFIEEVKAQILEMR TQKGLYRIGFIEEVKAQILEMRYTKGKLSM R I G V K A 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 8 0 933.51713 Q96P63 Q96P63 232 239 SERPINB12 Serpin B12 yes yes 2 0.038078 56.547 By MS/MS 1 0.28105 0.30852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28105 0.30852 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1739100 1356400 382760 0 0 0 0 0 0 1739100 1356400 382760 0 0 0 0 0 0 0 0 0 14667 3710 15269 75030 76135 76135 1 IGFPWSEIR LGLNIYEQNDRLTPKIGFPWSEIRNISFND DRLTPKIGFPWSEIRNISFNDKKFVIKPID K I G I R N 0 1 0 0 0 0 1 1 0 2 0 0 0 1 1 1 0 1 0 0 0 0 9 0 1103.5764 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 238 246 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 3 2 4 4 1 1.1234 1.0379 15.509 20 Median 1.0192 1.0052 16.81 6 1 Median 1.103 0.96956 6.5766 3 0 Median 1.0546 1.0421 3.4967 2 0 Median 1.1503 0.99269 4.5553 4 0 Median 1.2593 1.276 16.942 4 0 Median 1.2174 1.0631 NaN 1 0 Median 200590000 98362000 102230000 77611000 38505000 39107000 23829000 11297000 12532000 80595000 39944000 40650000 12960000 5991900 6968000 5201100 2449600 2751500 394660 173970 220690 14668 2139;879;2235 15270 75031;75032;75033;75034;75035;75036;75037;75038;75039;75040;75041;75042;75043;75044;75045;75046;75047;75048;75049;75050 76136;76137;76138;76139;76140;76141;76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153;76154;76155 76144 20 IGFVGFPSVGK GPGEGFDVAKTGDARIGFVGFPSVGKSTLL GDARIGFVGFPSVGKSTLLSNLAGVYSEVA R I G G K S 0 0 0 0 0 0 0 3 0 1 0 1 0 2 1 1 0 0 0 2 0 0 11 0 1106.6124 Q9Y295 Q9Y295 67 77 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.0085156 40.352 By MS/MS By matching By MS/MS 2 1 1 1.1318 1.1061 25.769 4 Median 1.3723 1.2834 28.49 2 0 Median 0.98489 0.84473 NaN 1 0 Median 1.1285 1.1661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32813000 15560000 17254000 15975000 7490700 8484200 4116900 2084100 2032800 12722000 5984700 6736800 0 0 0 0 0 0 0 0 0 14669 4382 15271 75051;75052;75053;75054 76156;76157;76158 76156 3 IGGADFLVWR FLAANESRVRTETRRIGGADFLVWRWIQPS TETRRIGGADFLVWRWIQPSASCDKILVIP R I G W R W 1 1 0 1 0 0 0 2 0 1 1 0 0 1 0 0 0 1 0 1 0 0 10 0 1132.6029 Q9Y2U8 Q9Y2U8 737 746 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 0.00035707 83.265 By matching By MS/MS By matching By matching By matching 1 2 3 1 2 1.2996 1.2352 22.929 9 Median NaN NaN NaN 0 0 Median 0.85687 0.89396 NaN 1 0 Median 1.1732 1.2299 12.068 2 0 Median 1.3897 1.1607 19.594 3 0 Median 1.1623 1.2352 NaN 1 0 Median 1.8451 1.6276 28.315 2 0 Median 18650000 8454900 10196000 0 0 0 10393000 4552000 5841100 6212800 3012900 3199800 889450 372760 516690 817590 391630 425950 337680 125610 212070 14670 4392 15272 75055;75056;75057;75058;75059;75060;75061;75062;75063 76159;76160 76160 2 IGGDAATTVNNSTPDFGFGGQK AFADAVQRARQIAAKIGGDAATTVNNSTPD TVNNSTPDFGFGGQKRQLEDGDQPESKKLA K I G Q K R 2 0 2 2 0 1 0 5 0 1 0 1 0 2 1 1 3 0 0 1 0 0 22 0 2153.0025 Q92945;A0A087WTP3;M0R0I5 Q92945 88 109 KHSRP Far upstream element-binding protein 2 yes no 2;3 7.7911E-33 170.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 7 4 2 1 0.81471 0.83282 26.359 18 Median 0.79033 0.72835 2.7715 2 0 Median 0.98761 0.89065 4.4088 2 0 Median 0.80691 0.82264 4.8377 7 0 Median 0.98101 0.84585 54.281 4 0 Median 0.88917 0.89985 17.538 2 0 Median 0.92029 0.78864 NaN 1 0 Median 402200000 214500000 187700000 14680000 8640700 6039700 1350200 634910 715280 339890000 181970000 157920000 39474000 19248000 20226000 6627300 3897100 2730300 174940 106020 68923 14671 3568 15273 75064;75065;75066;75067;75068;75069;75070;75071;75072;75073;75074;75075;75076;75077;75078;75079;75080;75081 76161;76162;76163;76164;76165;76166;76167;76168;76169;76170;76171;76172;76173;76174;76175;76176;76177;76178;76179;76180;76181;76182 76165 22 IGGDAATTVNNSTPDFGFGGQKR AFADAVQRARQIAAKIGGDAATTVNNSTPD VNNSTPDFGFGGQKRQLEDGDQPESKKLAS K I G K R Q 2 1 2 2 0 1 0 5 0 1 0 1 0 2 1 1 3 0 0 1 0 0 23 1 2309.1036 Q92945;A0A087WTP3;M0R0I5 Q92945 88 110 KHSRP Far upstream element-binding protein 2 yes no 3 1.4464E-35 123.19 By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 0.90877 0.96124 12.958 8 Median 0.87006 0.8951 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90877 0.99589 4.4458 2 0 Median NaN NaN NaN 0 0 Median 0.89043 0.94893 17.578 4 0 Median 1.2007 1.0998 NaN 1 0 Median 198100000 100240000 97864000 29800000 15153000 14647000 0 0 0 127090000 64115000 62972000 0 0 0 40261000 20484000 19777000 955120 487220 467900 14672 3568 15274 75082;75083;75084;75085;75086;75087;75088;75089 76183;76184;76185;76186;76187;76188;76189;76190 76186 8 IGGDAGTSLNSNDYGYGGQK AFKDALQRARQIAAKIGGDAGTSLNSNDYG GTSLNSNDYGYGGQKRPLEDGDQPDAKKVA K I G Q K R 1 0 2 2 0 1 0 6 0 1 1 1 0 0 0 2 1 0 2 0 0 0 20 0 1972.8763 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 45 64 FUBP1 Far upstream element-binding protein 1 no no 2;3 6.0811E-59 218.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 8 1 1 1.2584 1.1083 14.418 17 Median 1.1075 0.99644 NaN 1 0 Median 1.1878 1.0395 27.561 2 0 Median 1.11 1.0814 19.689 4 0 Median 1.3341 1.1396 12.195 8 1 Median 1.1914 1.2196 NaN 1 0 Median 1.3178 1.0884 NaN 1 0 Median 374500000 169080000 205420000 16038000 6817500 9220500 2969100 1255500 1713600 270880000 124570000 146310000 74012000 31694000 42318000 8900600 3897300 5003400 1693800 841330 852520 14673 3599;723 15275 75090;75091;75092;75093;75094;75095;75096;75097;75098;75099;75100;75101;75102;75103;75104;75105;75106 76191;76192;76193;76194;76195;76196;76197;76198;76199;76200;76201;76202;76203;76204;76205;76206;76207;76208;76209;76210;76211;76212;76213;76214 76194 24 IGGGDTTEHIQTHFESK LGRVQEFDSGLLHWRIGGGDTTEHIQTHFE GGDTTEHIQTHFESKTELLPSRPHAPCPPA R I G S K T 0 0 0 1 0 1 2 3 2 2 0 1 0 1 0 1 3 0 0 0 0 0 17 0 1855.8701 O14497;H0Y488;A0A1B0GTU5 O14497 1846 1862 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3;4 2.2986E-14 112.34 By MS/MS By MS/MS By matching By MS/MS 6 6 3 3 1.3302 1.2261 22.759 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0525 1.1431 13.972 6 0 Median 1.4152 1.2261 4.7716 6 2 Median 1.2569 1.3249 53.145 3 0 Median 1.8593 1.5321 15.786 3 0 Median 167400000 83239000 84160000 0 0 0 0 0 0 108320000 58648000 49672000 41871000 16459000 25413000 9866200 5187700 4678500 7340600 2944500 4396100 14674 1480 15276 75107;75108;75109;75110;75111;75112;75113;75114;75115;75116;75117;75118;75119;75120;75121;75122;75123;75124 76215;76216;76217;76218;76219;76220;76221;76222;76223;76224;76225;76226;76227;76228;76229;76230 76223 16 IGGGIDVPVPR RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK R I G P R H 0 1 0 1 0 0 0 3 0 2 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1078.6135 Q92945;A0A087WTP3;M0R0I5 Q92945 321 331 KHSRP Far upstream element-binding protein 2 yes no 2 0.00011552 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 4 2 1 0.77798 0.75851 18.68 16 Median 0.72806 0.68836 NaN 1 0 Median 0.94167 0.81406 9.039 2 0 Median 0.71245 0.75839 28.775 6 2 Median 0.9498 0.80751 15.552 4 1 Median 0.74295 0.74712 1.183 2 1 Median 0.90244 0.7281 NaN 1 0 Median 671980000 369450000 302530000 36912000 21354000 15558000 14757000 7855200 6901400 424590000 237490000 187100000 158800000 82693000 76112000 29295000 15973000 13322000 7626100 4084400 3541700 14675 3568 15277 75125;75126;75127;75128;75129;75130;75131;75132;75133;75134;75135;75136;75137;75138;75139;75140 76231;76232;76233;76234;76235;76236;76237;76238;76239;76240;76241;76242;76243;76244;76245;76246;76247;76248;76249;76250;76251;76252;76253;76254;76255;76256;76257;76258;76259;76260;76261;76262;76263;76264 76244 34 IGGGIGFGGLEAMNSMGGFGGVGR GGMGMDGPGFGGMNRIGGGIGFGGLEAMNS LEAMNSMGGFGGVGRMGELYRGAMTSSMER R I G G R M 1 1 1 0 0 0 1 11 0 2 1 0 2 2 0 1 0 0 0 1 0 0 24 0 2197.0408 A0A0A0MQW0;A0A0A0MR39;A0A0C4DGV1;Q9P2K5;A0A087WUT0 A0A0A0MQW0 377 400 MYEF2 Myelin expression factor 2 yes no 2 0.0042649 26.148 By MS/MS By MS/MS 2 2 0.75021 0.76627 5.001 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72341 0.75653 6.0841 2 0 Median NaN NaN NaN 0 0 Median 0.75964 0.77414 5.7202 2 0 Median NaN NaN NaN 0 0 Median 4590500 2734500 1856000 0 0 0 0 0 0 1951000 1141600 809360 0 0 0 2639500 1592900 1046700 0 0 0 14676 149 15278 75141;75142;75143;75144 76265;76266;76267 76267 3 IGGIFAFK IEKKLEEEGEQFVKKIGGIFAFKVKDGPGG GEQFVKKIGGIFAFKVKDGPGGKEATWVVD K I G F K V 1 0 0 0 0 0 0 2 0 2 0 1 0 2 0 0 0 0 0 0 0 0 8 0 851.49052 P22307;H0YF61 P22307 455 462 SCP2 Non-specific lipid-transfer protein yes no 2 0.0077692 65.672 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.4824 1.314 5.7273 4 Median 1.3475 1.21 NaN 1 0 Median 1.6203 1.3311 NaN 1 0 Median 1.3563 1.2972 NaN 1 0 Median 1.7002 1.3868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136010000 56031000 79984000 93621000 39274000 54347000 28523000 10844000 17678000 12905000 5562500 7342800 966180 349920 616270 0 0 0 0 0 0 14677 2099 15279 75145;75146;75147;75148 76268;76269;76270;76271;76272;76273;76274 76269 7 IGGIGTVPVGR PTDKPLRLPLQDVYKIGGIGTVPVGRVETG DVYKIGGIGTVPVGRVETGVLKPGMVVTFA K I G G R V 0 1 0 0 0 0 0 4 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1024.6029 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 256 266 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 2 9.1196E-05 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 12 11 14 7 8 0.98085 0.8521 48.136 62 Median 1.0507 0.97516 20.987 11 1 Median 0.9619 0.8101 76.735 11 0 Median 1.0587 1.116 33.708 11 1 Median 0.94959 0.80107 47.501 14 1 Median 1.0604 1.082 35.365 7 1 Median 0.93214 0.74337 6.1712 8 0 Median 13307000000 6619400000 6687700000 2105900000 1029800000 1076100000 1483200000 758820000 724370000 2531600000 1227500000 1304100000 6634500000 3327900000 3306600000 211060000 102840000 108230000 340800000 172520000 168280000 14678 2632;404 15280 75149;75150;75151;75152;75153;75154;75155;75156;75157;75158;75159;75160;75161;75162;75163;75164;75165;75166;75167;75168;75169;75170;75171;75172;75173;75174;75175;75176;75177;75178;75179;75180;75181;75182;75183;75184;75185;75186;75187;75188;75189;75190;75191;75192;75193;75194;75195;75196;75197;75198;75199;75200;75201;75202;75203;75204;75205;75206;75207;75208;75209;75210;75211 76275;76276;76277;76278;76279;76280;76281;76282;76283;76284;76285;76286;76287;76288;76289;76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302;76303;76304;76305;76306;76307;76308;76309;76310;76311;76312;76313;76314;76315;76316;76317;76318;76319;76320;76321;76322;76323;76324;76325;76326;76327;76328;76329;76330;76331;76332;76333;76334;76335;76336;76337;76338;76339;76340;76341;76342;76343;76344;76345;76346;76347;76348;76349;76350;76351;76352;76353;76354;76355;76356;76357;76358;76359;76360;76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372;76373;76374;76375;76376;76377;76378;76379;76380;76381;76382;76383;76384;76385;76386;76387;76388;76389;76390;76391;76392;76393;76394;76395;76396;76397;76398;76399;76400;76401;76402;76403;76404;76405;76406;76407;76408;76409;76410;76411;76412;76413;76414;76415;76416;76417;76418;76419;76420;76421;76422 76312 148 IGGISGIFK YYLGLAGVVKYRGVRIGGISGIFKSHDYRK KYRGVRIGGISGIFKSHDYRKGHFECPPYN R I G F K S 0 0 0 0 0 0 0 3 0 3 0 1 0 1 0 1 0 0 0 0 0 0 9 0 890.52255 Q9UK59 Q9UK59 120 128 DBR1 Lariat debranching enzyme yes yes 2 0.00839 50.127 By MS/MS By matching 1 2 1.0737 0.9873 9.4055 3 Median 1.026 0.9873 NaN 1 0 Median 1.1849 1.0659 11.739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3767200 1898600 1868600 2999500 1564500 1435000 767790 334150 433640 0 0 0 0 0 0 0 0 0 0 0 0 14679 4306 15281 75212;75213;75214 76423 76423 1 IGGNEGIDVPIPR DQGGFREVRNEYGSRIGGNEGIDVPIPRFA SRIGGNEGIDVPIPRFAVGIVIGRNGEMIK R I G P R F 0 1 1 1 0 0 1 3 0 3 0 0 0 0 2 0 0 0 0 1 0 0 13 0 1335.7147 Q96AE4;E9PEB5 Q96AE4 272 284 FUBP1 Far upstream element-binding protein 1 yes no 2 4.3015E-15 182.28 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 3 1 1 0.96509 0.84092 14.717 14 Median 1.0817 1.0582 15.605 3 0 Median 0.88763 0.76779 6.8568 2 0 Median 0.90446 0.9294 21.279 4 0 Median 0.98665 0.85047 1.366 3 0 Median 0.76609 0.79213 NaN 1 0 Median 0.97014 0.78902 NaN 1 0 Median 249210000 127810000 121400000 43425000 20419000 23005000 5204100 2828900 2375200 157790000 83716000 74069000 33852000 16335000 17517000 6742800 3407300 3335500 2198700 1103400 1095400 14680 3599 15282 75215;75216;75217;75218;75219;75220;75221;75222;75223;75224;75225;75226;75227;75228 76424;76425;76426;76427;76428;76429;76430;76431;76432;76433;76434;76435;76436;76437;76438;76439;76440;76441;76442 76429 19 IGGVQQDTILAEGLHFR VFTVEGGHRAIFFNRIGGVQQDTILAEGLH GVQQDTILAEGLHFRIPWFQYPIIYDIRAR R I G F R I 1 1 0 1 0 2 1 3 1 2 2 0 0 1 0 0 1 0 0 1 0 0 17 0 1852.9795 J3KPX7;Q99623;F5GY37;F5H3X6;F5H0C5;F5H2D2 J3KPX7 55 71 PHB2 Prohibitin-2 yes no 2;3 5.9833E-07 87.001 By MS/MS By MS/MS By matching 2 1 2 1.1069 1.0342 36.93 5 Median 1.0938 1.0205 1.8761 2 0 Median 1.4973 1.2448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93496 0.79644 63.28 2 0 Median 274790000 125700000 149100000 216880000 102750000 114130000 49380000 19662000 29717000 0 0 0 0 0 0 0 0 0 8531800 3281500 5250300 14681 1313 15283 75229;75230;75231;75232;75233 76443;76444;76445;76446;76447;76448;76449;76450;76451 76447 9 IGHLLPEEQVYLNQQSGTIR FGSQENKDPLSASSRIGHLLPEEQVYLNQQ PEEQVYLNQQSGTIRLDCFTHCLIVKCTAD R I G I R L 0 1 1 0 0 3 2 2 1 2 3 0 0 0 1 1 1 0 1 1 0 0 20 0 2294.2019 O95071;E7EMW7 O95071 1360 1379 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 8.8244E-19 135.28 By MS/MS By MS/MS 2 1 0.7383 0.72877 15.208 3 Plateau 0.71375 0.68688 9.6957 2 0 Median 0.63889 0.54296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19973000 11513000 8460700 17488000 10266000 7221600 2485400 1246300 1239100 0 0 0 0 0 0 0 0 0 0 0 0 14682 1744 15284 75234;75235;75236 76452;76453;76454;76455;76456 76452 4 IGHPAPNFK ______________________________ SSGNAKIGHPAPNFKATAVMPDGQFKDISL K I G F K A 1 0 1 0 0 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 0 0 9 0 979.52395 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 8 16 PRDX1 Peroxiredoxin-1 yes no 2 0.00068909 104.45 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 1 1 0.98012 0.81075 51.991 9 Median 1.0583 0.96887 11.388 2 0 Median 0.93117 0.78167 5.05 4 0 Median 1.2456 1.1683 NaN 1 0 Median 0.9586 0.79406 NaN 1 0 Median 3.327 3.8327 NaN 1 0 Median NaN NaN NaN 0 0 Median 363860000 176600000 187270000 226530000 108100000 118430000 100260000 51516000 48744000 33443000 15207000 18237000 3129500 1623900 1505600 504430 151110 353320 0 0 0 14683 2728 15285 75237;75238;75239;75240;75241;75242;75243;75244;75245 76457;76458;76459;76460;76461;76462;76463;76464;76465;76466;76467;76468 76458 12 IGHYILGDTLGVGTFGK KMATAEKQKHDGRVKIGHYILGDTLGVGTF HYILGDTLGVGTFGKVKVGKHELTGHKVAV K I G G K V 0 0 0 1 0 0 0 5 1 2 2 1 0 1 0 0 2 0 1 1 0 0 17 0 1746.9305 Q13131;Q96E92 Q13131 24 40 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 yes no 3 8.7982E-05 45.33 By MS/MS By matching 1 1 1.235 1.1233 19.157 2 Median 1.0242 0.98098 NaN 1 0 Median 1.4891 1.2862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6387300 3209200 3178100 4863100 2579400 2283800 1524100 629800 894320 0 0 0 0 0 0 0 0 0 0 0 0 14684 2788 15286 75246;75247 76469;76470 76469 2 IGIDIDHTQSYR KSGQEKSHSVNTEEKIGIDIDHTQSYRKQM EEKIGIDIDHTQSYRKQMEQSRRKQQMEME K I G Y R K 0 1 0 2 0 1 0 1 1 3 0 0 0 0 0 1 1 0 1 0 0 0 12 0 1416.6997 Q96T58 Q96T58 1159 1170 SPEN Msx2-interacting protein yes yes 3 0.0011982 43.613 By MS/MS By matching By MS/MS 1 1 2 0.7755 0.82011 26.17 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76198 0.81107 NaN 1 0 Median 1.3626 1.1995 NaN 1 0 Median 0.69118 0.72622 18.762 2 2 Median NaN NaN NaN 0 0 Median 14690000 8261900 6428500 0 0 0 0 0 0 6783000 3703300 3079700 696750 300010 396740 7210600 4258500 2952100 0 0 0 14685 3741 15287 75248;75249;75250;75251 76471;76472;76473 76471 3 IGIEIIKR IPALDSLTPANEDQKIGIEIIKRTLKIPAM PANEDQKIGIEIIKRTLKIPAMTIAKNAGV K I G K R T 0 1 0 0 0 0 1 1 0 4 0 1 0 0 0 0 0 0 0 0 0 0 8 1 940.60695 P10809 P10809 463 470 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0033875 116.54 By MS/MS By MS/MS By matching By MS/MS By matching 4 3 1 2 1 1.5794 1.4417 21.722 11 Median 1.3407 1.3225 20.997 4 0 Median 1.5794 1.4079 8.9882 3 0 Median 1.1595 1.2963 NaN 1 0 Median 1.7207 1.5961 1.7601 2 0 Median 2.3659 2.4226 NaN 1 0 Median NaN NaN NaN 0 0 Median 256940000 112340000 144600000 111960000 51159000 60797000 126940000 55034000 71908000 5110500 2105800 3004700 2026600 745630 1280900 10908000 3295500 7612400 0 0 0 14686 1947 15288 75252;75253;75254;75255;75256;75257;75258;75259;75260;75261;75262 76474;76475;76476;76477;76478;76479 76476 6 IGIFGQDEDVTSK ITGDNKGTAVAICRRIGIFGQDEDVTSKAF RRIGIFGQDEDVTSKAFTGREFDELNPSAQ R I G S K A 0 0 0 2 0 1 1 2 0 2 0 1 0 1 0 1 1 0 0 1 0 0 13 0 1407.6882 P16615;H7C5W9 P16615 638 650 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 2.754E-06 121.9 By MS/MS By MS/MS 3 2 1.1147 1.02 3.8309 3 Median 1.0688 1.0053 2.0591 2 1 Median 1.1984 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48729000 27011000 21718000 21700000 10973000 10727000 27029000 16038000 10991000 0 0 0 0 0 0 0 0 0 0 0 0 14687 2031 15289 75263;75264;75265;75266;75267 76480;76481;76482;76483;76484;76485 76480 6 IGIGELITR VLRSPARHQLDHVFKIGIGELITRSAKHIF LDHVFKIGIGELITRSAKHIFKTYLQGVEL K I G T R S 0 1 0 0 0 0 1 2 0 3 1 0 0 0 0 0 1 0 0 0 0 0 9 0 970.58113 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 811 819 CLUH Clustered mitochondria protein homolog yes no 2 0.0028118 69.423 By MS/MS 1 1.4433 1.3861 NaN 1 Median 1.4433 1.3861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4523600 1649600 2874000 4523600 1649600 2874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14688 1651 15290 75268 76486;76487 76486 2 IGIGNHNSKPVYR HMPFFAKTVTGCFVRIGIGNHNSKPVYRVA VRIGIGNHNSKPVYRVAEITGVVETAKVYQ R I G Y R V 0 1 2 0 0 0 0 2 1 2 0 1 0 0 1 1 0 0 1 1 0 0 13 1 1453.779 Q92541 Q92541 389 401 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 3 0.0071438 29.689 By MS/MS 1 0.81661 0.78105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81661 0.78105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 904070 425090 478980 0 0 0 0 0 0 0 0 0 904070 425090 478980 0 0 0 0 0 0 14689 3534 15291 75269 76488;76489 76488 2 IGIIDGEYVVNPTR SLSDIPWNGPVGAVRIGIIDGEYVVNPTRK RIGIIDGEYVVNPTRKEMSSSTLNLVVAGA R I G T R K 0 1 1 1 0 0 1 2 0 3 0 0 0 0 1 0 1 0 1 2 0 0 14 0 1544.8199 Q8TCS8 Q8TCS8 193 206 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.00052445 68.069 By matching By MS/MS By MS/MS 1 1 1 1.2112 1.0437 18.523 3 Median NaN NaN NaN 0 0 Median 1.2591 1.1415 NaN 1 0 Median 0.76202 0.7995 NaN 1 0 Median 1.2112 1.0437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8722800 4178900 4543900 0 0 0 878190 381000 497190 4921100 2492900 2428300 2923500 1305000 1618500 0 0 0 0 0 0 14690 3467 15292 75270;75271;75272 76490;76491;76492 76490 3 IGIIDGEYVVNPTRK SLSDIPWNGPVGAVRIGIIDGEYVVNPTRK IGIIDGEYVVNPTRKEMSSSTLNLVVAGAP R I G R K E 0 1 1 1 0 0 1 2 0 3 0 1 0 0 1 0 1 0 1 2 0 0 15 1 1672.9148 Q8TCS8 Q8TCS8 193 207 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 3 0.0059015 25.866 By matching By matching By MS/MS 1 1 1 1.0871 1.1536 17.254 3 Median 1.0574 1.0849 NaN 1 0 Median 1.4942 1.5013 NaN 1 0 Median 1.0871 1.1536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12438000 5265200 7172700 6463500 2591200 3872400 547500 166760 380740 5426900 2507300 2919600 0 0 0 0 0 0 0 0 0 14691 3467 15293 75273;75274;75275 76493 76493 1 IGIIGGTGLDDPEILEGR DWGAALGTHLPREERIGIIGGTGLDDPEIL IGGTGLDDPEILEGRTEKYVDTPFGKPSDA R I G G R T 0 1 0 2 0 0 2 5 0 4 2 0 0 0 1 0 1 0 0 0 0 0 18 0 1823.9629 B4DUC8;Q13126;J3QSB7;F2Z2F3;F8WES2 B4DUC8 29 46 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 2 0.0031207 31.228 By MS/MS 1 0.98945 0.95201 NaN 1 Median 0.98945 0.95201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2752300 1304700 1447600 2752300 1304700 1447600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14692 604 15294 75276 76494;76495 76494 2 IGILHENFQTLK KDAVFIPAGWDNDKKIGILHENFQTLKAED DKKIGILHENFQTLKAEDNFEDIITKPPVR K I G L K A 0 0 1 0 0 1 1 1 1 2 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1411.7823 Q9Y6G9;E9PHI6 Q9Y6G9 333 344 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 3 0.0003177 56.205 By MS/MS By matching By MS/MS By matching 1 2 2 2 1.0096 0.96069 15.878 7 Median 1.0096 0.96069 NaN 1 0 Median 1.2562 1.1123 18.782 2 0 Median 0.9636 0.94995 16.392 2 0 Median 0.95111 0.83576 8.4459 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26095000 14305000 11790000 6925100 3674600 3250600 1650000 706580 943420 15652000 8983800 6668300 1867800 940090 927700 0 0 0 0 0 0 14693 4491 15295 75277;75278;75279;75280;75281;75282;75283 76496;76497 76497 2 IGIMPGHIHKK IGPNCPGVINPGECKIGIMPGHIHKKGRIG GECKIGIMPGHIHKKGRIGIVSRSGTLTYE K I G K K G 0 0 0 0 0 0 0 2 2 3 0 2 1 0 1 0 0 0 0 0 0 0 11 1 1229.7067 P53597;A0A494C0D1 P53597 183 193 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 3 0.0084731 29.534 By MS/MS By MS/MS 1 1 1.0761 1.0094 28.082 2 Median 0.84772 0.82758 NaN 1 0 Median 1.3661 1.2311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6535900 3555500 2980400 4789100 2824900 1964200 1746800 730670 1016100 0 0 0 0 0 0 0 0 0 0 0 0 14694 2469 15296 75284;75285 76498;76499;76500;76501 76498 4 IGISDISSLSEK KRDSFDNCSLGESSKIGISDISSLSEKTFQ SSKIGISDISSLSEKTFQTLECQHKRSRRV K I G E K T 0 0 0 1 0 0 1 1 0 3 1 1 0 0 0 4 0 0 0 0 0 0 12 0 1247.6609 Q5UIP0 Q5UIP0 1700 1711 RIF1 Telomere-associated protein RIF1 yes yes 2 5.4737E-06 98.943 By matching By MS/MS By matching By MS/MS 1 2 2 1 0.97294 0.9933 58.191 6 Median NaN NaN NaN 0 0 Median 0.40108 0.35263 NaN 1 0 Median 0.97294 1.0625 6.7223 2 0 Median 0.65282 0.58018 73.239 2 0 Median 1.12 1.1864 NaN 1 1 Median NaN NaN NaN 0 0 Median 30204000 15871000 14333000 0 0 0 3145800 2399600 746290 23674000 11912000 11762000 1318100 707150 611000 2066100 852850 1213300 0 0 0 14695 3109 15297 75286;75287;75288;75289;75290;75291 76502;76503;76504 76503 3 IGITNHDEYSLVR DSKTVTDMLMTICARIGITNHDEYSLVREL ARIGITNHDEYSLVRELMEEKKEEITGTLR R I G V R E 0 1 1 1 0 0 1 1 1 2 1 0 0 0 0 1 1 0 1 1 0 0 13 0 1515.7682 Q9Y490 Q9Y490 119 131 TLN1 Talin-1 yes yes 2;3 1.0439E-07 134.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 3 2 1.0132 0.83132 24.129 17 Median 0.79553 0.77377 19.124 5 0 Median 1.0132 0.82662 19.809 5 1 Median 1.0402 1.0754 52.079 2 0 Median 1.2092 1.0411 4.6508 3 1 Median NaN NaN NaN 0 0 Median 0.92814 0.76311 26.759 2 0 Median 193490000 85166000 108330000 72099000 35620000 36479000 63565000 22212000 41353000 36827000 18243000 18584000 18997000 8019600 10977000 0 0 0 2005800 1071600 934270 14696 4441 15298 75292;75293;75294;75295;75296;75297;75298;75299;75300;75301;75302;75303;75304;75305;75306;75307;75308 76505;76506;76507;76508;76509;76510;76511;76512;76513;76514;76515;76516;76517;76518;76519;76520;76521 76513 17 IGIVGLPNVGK IKPPPIIGRFGTSLKIGIVGLPNVGKSTFF TSLKIGIVGLPNVGKSTFFNVLTNSQASAE K I G G K S 0 0 1 0 0 0 0 3 0 2 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1065.6546 J3KQ32;Q9NTK5;C9JTK6 J3KQ32 45 55 OLA1 Obg-like ATPase 1 yes no 2 0.0025774 52.716 By MS/MS By matching By MS/MS By matching 3 3 2 2 0.99985 0.91453 11.302 10 Median 1.0152 0.93815 11.551 3 0 Plateau 0.98064 0.83579 10.623 3 0 Median 1.0099 1.0359 12.256 2 0 Median 1.0037 0.87616 3.0905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48615000 23812000 24803000 24808000 12559000 12248000 12124000 5732700 6390900 9860200 4677200 5183000 1823700 842560 981090 0 0 0 0 0 0 14697 1315 15299 75309;75310;75311;75312;75313;75314;75315;75316;75317;75318 76522;76523;76524;76525;76526;76527 76525 6 IGKDEMLQMIR IVIQQGRLVDQNLNKIGKDEMLQMIRHGAT NLNKIGKDEMLQMIRHGATHVFASKESEIT K I G I R H 0 1 0 1 0 1 1 1 0 2 1 1 2 0 0 0 0 0 0 0 0 0 11 1 1332.6894 O60264 O60264 645 655 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 4.8501E-05 110.86 By MS/MS By matching By MS/MS By matching 1 1 5 2 1.0096 1.1079 25.105 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0974 1.2444 NaN 1 0 Median 0.53829 0.57536 NaN 1 0 Median 1.0029 1.1079 11.348 5 2 Median 1.2901 1.1231 2.0417 2 0 Median 72392000 34178000 38214000 0 0 0 0 0 0 17428000 7988700 9438800 979600 591040 388570 49715000 23842000 25874000 4270100 1756900 2513100 14698 1608 15300 75319;75320;75321;75322;75323;75324;75325;75326;75327 76528;76529;76530;76531;76532;76533;76534;76535;76536;76537 76534 10 IGKPAPDFK ______________________________ ASGNARIGKPAPDFKATAVVDGAFKEVKLS R I G F K A 1 0 0 1 0 0 0 1 0 1 0 2 0 1 2 0 0 0 0 0 0 0 9 1 971.54402 P32119;A6NIW5 P32119 8 16 PRDX2 Peroxiredoxin-2 yes no 2 0.0069577 81.163 By MS/MS By MS/MS By matching 1 1 1 0.69052 0.66534 3.1403 2 Median 0.6407 0.65073 NaN 1 0 Median 0.74421 0.68028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25216000 14728000 10488000 20055000 12061000 7993800 4741500 2448900 2292600 419590 218350 201240 0 0 0 0 0 0 0 0 0 14699 2215 15301 75328;75329;75330 76538;76539;76540 76539 3 IGLADYALESGGASVISTR HHIVKQALQRYSEDRIGLADYALESGGASV DYALESGGASVISTRCSETYETKTALLSLF R I G T R C 3 1 0 1 0 0 1 3 0 2 2 0 0 0 0 3 1 0 1 1 0 0 19 0 1878.9687 Q9UH99;B0QY60 Q9UH99 544 562 SUN2 SUN domain-containing protein 2 yes no 2 1.0982E-18 154.47 By MS/MS By MS/MS 1 1 0.91603 0.94841 7.1933 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88604 0.90137 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94703 0.99789 NaN 1 0 Median NaN NaN NaN 0 0 Median 16491000 8813400 7677900 0 0 0 0 0 0 12481000 6957000 5524100 0 0 0 4010200 1856400 2153800 0 0 0 14700 4271 15302 75331;75332 76541;76542;76543;76544 76542 4 IGLAEEIR EGIPRIYVSANSGARIGLAEEIRHMFHVAW SANSGARIGLAEEIRHMFHVAWVDPEDPYK R I G I R H 1 1 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 899.50763 Q13085;Q59FY4 Q13085 1724 1731 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.017413 77.282 By MS/MS By MS/MS 1 4 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14701 2784 15303 75333;75334;75335;75336;75337 76545;76546;76547;76548;76549 76547 5 IGLDWLAK NAPSLLYGALRDYQKIGLDWLAKLYRKNLN ALRDYQKIGLDWLAKLYRKNLNGILADEAG K I G A K L 1 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 8 0 914.52255 Q96L91 Q96L91 1097 1104 EP400 E1A-binding protein p400 yes yes 2 0.020415 46.426 By MS/MS By matching By matching 1 2 1 1.0776 1.0246 7.6615 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0609 1.1392 NaN 1 0 Median 1.0664 0.97443 2.5484 2 0 Median NaN NaN NaN 0 0 Median 1.2157 1.0581 NaN 1 0 Median 6687300 3223200 3464100 0 0 0 0 0 0 6310500 3031500 3279000 334010 173950 160070 0 0 0 42765 17742 25023 14702 3700 15304 75338;75339;75340;75341 76550;76551 76551 2 IGLETSLR EDVEMSEDAYTVLTRIGLETSLRYAIQLIT AYTVLTRIGLETSLRYAIQLITAASLVCRK R I G L R Y 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 887.50763 Q9Y230 Q9Y230 393 400 RUVBL2 RuvB-like 2 yes yes 2 0.0021595 128.57 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 3 2 2 1.1891 1.0934 15.011 10 Median 1.2332 1.1903 7.0963 2 1 Median 1.2472 1.0512 12.088 2 0 Median 1.1035 1.0677 19.803 3 0 Plateau 1.1904 1.0213 1.7845 2 0 Median 1.343 1.3427 NaN 1 1 Median NaN NaN NaN 0 0 Median 171210000 77595000 93611000 36868000 15437000 21431000 16190000 6814300 9375600 71213000 35600000 35613000 37221000 15615000 21606000 9713400 4128100 5585200 0 0 0 14703 4368 15305 75342;75343;75344;75345;75346;75347;75348;75349;75350;75351;75352;75353 76552;76553;76554;76555;76556;76557;76558;76559;76560;76561 76557 10 IGLETVGVK NTVMLAIGRDACTRKIGLETVGVKINEKTG DACTRKIGLETVGVKINEKTGKIPVTDEEQ K I G V K I 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 914.54368 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PRI8 E9PIR7 300 308 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.011663 47.082 By MS/MS 1 1.0727 0.91476 NaN 1 Median NaN NaN NaN 0 0 Median 1.0727 0.91476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3755100 1689600 2065500 0 0 0 3755100 1689600 2065500 0 0 0 0 0 0 0 0 0 0 0 0 14704 11 15306 75354 76562 76562 1 IGLFADIELSR GKPHLVLGLLWQIIKIGLFADIELSRNEAL QIIKIGLFADIELSRNEALAALLRDGETLE K I G S R N 1 1 0 1 0 0 1 1 0 2 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1232.6765 P13797;A0A0A0MSQ0;P13796;Q5TBN3 P13797 237 247 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 0.0062922 64.297 By MS/MS 1 1.5349 1.3276 NaN 1 Median NaN NaN NaN 0 0 Median 1.5349 1.3276 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12059000 4521500 7537900 0 0 0 12059000 4521500 7537900 0 0 0 0 0 0 0 0 0 0 0 0 14705 1995 15307 75355 76563;76564 76564 2 IGLFGGAGVGK IKVVDLLAPYAKGGKIGLFGGAGVGKTVLI KGGKIGLFGGAGVGKTVLIMELINNVAKAH K I G G K T 1 0 0 0 0 0 0 5 0 1 1 1 0 1 0 0 0 0 0 1 0 0 11 0 974.55492 P06576;H0YH81;F8W079 P06576 202 212 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 0.00035542 71.379 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 3 1 1 1.3123 1.1352 37.796 13 Median 1.1397 1.0502 5.4214 2 1 Median 1.404 1.1837 65.713 3 0 Median 1.1599 1.1139 36.372 3 0 Median 1.3954 1.2498 6.6617 3 0 Median 1.6988 1.6201 NaN 1 0 Median 1.2247 1.0334 NaN 1 0 Median 261720000 118470000 143250000 139720000 64350000 75372000 79849000 34677000 45171000 29006000 14012000 14994000 8203200 3492200 4711000 3683400 1377000 2306400 1256300 558120 698150 14706 1872 15308 75356;75357;75358;75359;75360;75361;75362;75363;75364;75365;75366;75367;75368 76565;76566;76567;76568;76569;76570;76571;76572;76573;76574;76575;76576 76565 12 IGLFNSSADR MLDDSSDPILTTIRRIGLFNSSADRVKVIF TTIRRIGLFNSSADRVKVIFHPEFLSSTSP R I G D R V 1 1 1 1 0 0 0 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 10 0 1078.5407 P13807 P13807 463 472 GYS1 Glycogen [starch] synthase, muscle yes yes 2 0.0030976 94.114 By MS/MS By MS/MS 1 1 1.1808 1.0212 NaN 1 Median NaN NaN NaN 0 0 Median 1.1808 1.0212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930700 2376600 3554000 0 0 0 5930700 2376600 3554000 0 0 0 0 0 0 0 0 0 0 0 0 14707 1997 15309 75369;75370 76577;76578 76577 2 IGLFYMDNDLITR VALGHRLDIVFYLLRIGLFYMDNDLITRNT LRIGLFYMDNDLITRNTEKAKSLIEEGGDW R I G T R N 0 1 1 2 0 0 0 1 0 2 2 0 1 1 0 0 1 0 1 0 0 0 13 0 1569.7861 Q15008;C9J0E9 Q15008 147 159 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.0044158 40.715 By MS/MS By MS/MS 1 1 1.3163 1.3684 17.549 2 Median 1.213 1.2087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4284 1.5492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6375400 2542100 3833300 3316600 1402600 1914000 0 0 0 3058800 1139600 1919300 0 0 0 0 0 0 0 0 0 14708 2911 15310 75371;75372 76579;76580;76581 76581 3 IGLGGRGGSGGSYGR LEGGQEDFESSGAGKIGLGGRGGSGGSYGR IGLGGRGGSGGSYGRGSRGGSGGSYGGGGS K I G G R G 0 2 0 0 0 0 0 8 0 1 1 0 0 0 0 2 0 0 1 0 0 0 15 1 1349.68 P35527;CON__P35527;K7EQQ3 P35527 473 487 KRT9 Keratin, type I cytoskeletal 9 yes no 3 2.7398E-10 109.07 By MS/MS By MS/MS By MS/MS 7 2 1 0.062126 0.055437 84.026 10 Median NaN NaN NaN 0 0 Median 0.064565 0.060296 85.086 7 7 Median NaN NaN NaN 0 0 Median 0.042334 0.03743 92.504 2 2 Median 0.016903 0.019857 NaN 1 1 Median NaN NaN NaN 0 0 Median 43947000 41820000 2126800 0 0 0 38237000 36271000 1966500 0 0 0 2152900 2006300 146640 3556300 3542600 13649 0 0 0 + 14709 2242 15311 75373;75374;75375;75376;75377;75378;75379;75380;75381;75382 76582;76583;76584;76585;76586;76587;76588;76589;76590;76591 76583 10 IGLINDMVR RRLATLLGLQAPPTRIGLINDMVRFNVLQY QAPPTRIGLINDMVRFNVLQYVVPEVKDLY R I G V R F 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1029.5641 Q14152 Q14152 368 376 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 5.96E-05 151.27 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 5 1 2 1 2 1.1558 1.0736 14.847 15 Median 1.1048 1.0649 5.0433 4 0 Median 1.1558 0.98159 13.623 5 0 Median 1.2101 1.3309 NaN 1 0 Median 1.1971 1.0523 3.6542 2 0 Median 1.1681 1.2204 NaN 1 0 Median 1.3526 1.1092 34.453 2 0 Median 148180000 70839000 77341000 100090000 49241000 50851000 33923000 15255000 18668000 6373700 3002600 3371100 997220 465670 531540 5168600 2178000 2990600 1626000 697190 928790 14710 2860 15312;15313 75383;75384;75385;75386;75387;75388;75389;75390;75391;75392;75393;75394;75395;75396;75397 76592;76593;76594;76595;76596;76597;76598 76595 1539 7 IGLIQFCLSAPK QKVSNSGITRVEKAKIGLIQFCLSAPKTDM KAKIGLIQFCLSAPKTDMDNQIVVSDYAQM K I G P K T 1 0 0 0 1 1 0 1 0 2 2 1 0 1 1 1 0 0 0 0 0 0 12 0 1345.7428 P50991 P50991 246 257 CCT4 T-complex protein 1 subunit delta yes yes 2 3.0793E-06 110.14 By MS/MS 2 0.69805 0.59223 61.305 2 Median NaN NaN NaN 0 0 Median 0.69805 0.59223 61.305 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7991300 3698400 4292900 0 0 0 7991300 3698400 4292900 0 0 0 0 0 0 0 0 0 0 0 0 14711 2424 15314 75398;75399 76599;76600 76600 2 IGLIQGNR APAAGMNAAVRSTVRIGLIQGNRVLVVHDG AVRSTVRIGLIQGNRVLVVHDGFEGLAKGQ R I G N R V 0 1 1 0 0 1 0 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 0 869.5083 A0A2R8Y891;P08237;F8VZI0;F8VP00 A0A2R8Y891 528 535 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0055194 75.311 By MS/MS By matching 1 1 1.3477 1.2395 9.824 2 Median 1.1845 1.1563 NaN 1 0 Median 1.5333 1.3287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6380400 2752400 3628000 2911800 1309800 1602000 3468700 1442700 2026000 0 0 0 0 0 0 0 0 0 0 0 0 14712 390 15315 75400;75401 76601 76601 1 IGLPGVAEK EIFNKATLEVILRPKIGLPGVAEKSRERLI VILRPKIGLPGVAEKSRERLIRNTCEAVVL K I G E K S 1 0 0 0 0 0 1 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 0 882.51747 Q9NQT4 Q9NQT4 84 92 EXOSC5 Exosome complex component RRP46 yes yes 2 0.0046254 60.118 By MS/MS By matching By MS/MS 1 2 1 1.0877 0.97204 37.569 4 Median 0.98631 0.9286 NaN 1 0 Median 1.631 1.4057 45.701 2 0 Median 0.90656 0.84978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21394000 10772000 10621000 3011800 1409300 1602600 2864300 1163300 1701100 15518000 8199800 7317800 0 0 0 0 0 0 0 0 0 14713 4066 15316 75402;75403;75404;75405 76602;76603;76604;76605 76605 4 IGLVEDLNK KKMEMKGEPKDKVEKIGLVEDLNKGAKPVV KDKVEKIGLVEDLNKGAKPVVVLQKLSLDD K I G N K G 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 999.56006 A0A590UJS4;Q6KC79 A0A590UJS4 989 997 NIPBL Nipped-B-like protein yes no 2 0.0014585 81.296 By matching By MS/MS By MS/MS 2 1 1 0.95065 1.0268 12.725 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8485 0.92626 12.165 2 0 Median NaN NaN NaN 0 0 Median 0.99748 1.0444 NaN 1 0 Median 1.346 1.1536 NaN 1 0 Median 29507000 13727000 15780000 0 0 0 0 0 0 14451000 7148600 7302100 0 0 0 13806000 5997900 7808200 1250100 580490 669640 14714 488 15317 75406;75407;75408;75409 76606;76607;76608;76609 76607 4 IGMGATLDIQR LEPIFSSSEPTSEARIGMGATLDIQRQQRM SEARIGMGATLDIQRQQRMELLDRQLMFSQ R I G Q R Q 1 1 0 1 0 1 0 2 0 2 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1173.6176 Q8NBM4;X6R5E5 Q8NBM4 233 243 UBAC2 Ubiquitin-associated domain-containing protein 2 yes no 2 0.00015042 90.15 By MS/MS By MS/MS 3 1 1.1647 1.1325 11.127 3 Median 1.1342 1.1166 2.004 2 0 Median 1.6388 1.3518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35677000 16307000 19370000 28017000 13324000 14693000 7660100 2983200 4676900 0 0 0 0 0 0 0 0 0 0 0 0 14715 3406 15318;15319 75410;75411;75412;75413 76610;76611;76612;76613;76614 76613 1721 5 IGMSVNAIR LKNIPMTLELLQSTRIGMSVNAIRKQSTDE LLQSTRIGMSVNAIRKQSTDEEVTSLAKSL R I G I R K 1 1 1 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 0 1 0 0 9 0 959.52224 A0A1W2PPZ5;P23193;A0A1W2PRL9;E5RIS7;E5RJ93 A0A1W2PPZ5 46 54 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.00056474 113.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 4 1 1 1.101 0.93237 13.284 10 Median 1.1047 1.1017 NaN 1 0 Median 1.1604 0.99287 18.327 2 1 Median 0.94082 0.91375 NaN 1 0 Median 1.1887 1.021 13.035 4 2 Median 0.8213 0.83675 NaN 1 0 Median 1.0973 0.855 NaN 1 0 Median 79407000 37795000 41611000 12837000 5724200 7112500 8044900 3547200 4497700 29763000 15084000 14679000 24534000 11200000 13335000 1995100 1108700 886450 2232300 1131300 1100900 14716 341 15320;15321 75414;75415;75416;75417;75418;75419;75420;75421;75422;75423 76615;76616;76617;76618;76619;76620;76621;76622;76623;76624 76616 159 10 IGNCPFSQR PQVELFVKAGSDGAKIGNCPFSQRLFMVLW GSDGAKIGNCPFSQRLFMVLWLKGVTFNVT K I G Q R L 0 1 1 0 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5026 O00299 O00299 21 29 CLIC1 Chloride intracellular channel protein 1 yes yes 2 0.0030194 67.993 By MS/MS By MS/MS 1 1 0.76427 0.68022 1.064 2 Median 0.7208 0.67512 NaN 1 1 Median 0.81036 0.68536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10302000 5913400 4388800 6544900 3659200 2885700 3757300 2254200 1503100 0 0 0 0 0 0 0 0 0 0 0 0 14717 1456 15322 75424;75425 76625;76626 76626 2 IGNLQTDLSDGLR FTRWCNEHLKCVNKRIGNLQTDLSDGLRLI KRIGNLQTDLSDGLRLIALLEVLSQKRMYR R I G L R L 0 1 1 2 0 1 0 2 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1400.726 O75369 O75369 37 49 FLNB Filamin-B yes yes 2 3.6781E-40 180.36 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1797 1.0932 12.467 8 Median 1.1465 1.0908 7.4329 2 2 Median 1.1922 0.98516 12.983 2 0 Median 1.1428 1.2412 16.21 2 0 Median 1.2371 1.0796 7.7181 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 156710000 68872000 87839000 96570000 42216000 54354000 41778000 18171000 23606000 17160000 7980500 9179700 1202600 504130 698460 0 0 0 0 0 0 14718 1664 15323 75426;75427;75428;75429;75430;75431;75432;75433 76627;76628;76629;76630;76631;76632;76633;76634 76628 8 IGNPVPYNEGLGQPQVAPPAPAASPAASSR MELEVLKSAEAVGVKIGNPVPYNEGLGQPQ VAPPAPAASPAASSRPQPQNGSSGMGSTVS K I G S R P 6 1 2 0 0 2 1 3 0 1 1 0 0 0 7 3 0 0 1 2 0 0 30 0 2912.4781 P27694;I3L2M5 P27694 112 141 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 9.3013E-06 35.934 By MS/MS By matching 1 1 0.15998 0.1599 37.482 2 Median 0.21422 0.20843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.11948 0.12267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6047100 4652300 1394800 4942400 3703000 1239400 0 0 0 0 0 0 1104700 949350 155390 0 0 0 0 0 0 14719 2156 15324 75434;75435 76635 76635 1 IGNSYFK ENREDYRQIAKAYARIGNSYFKEEKYKDAI QIAKAYARIGNSYFKEEKYKDAIHFYNKSL R I G F K E 0 0 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 0 7 0 827.41775 P31948 P31948 306 312 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.014011 75.269 By matching By MS/MS 1 2 1.1999 1.1646 9.8864 3 Median 1.1769 1.1646 NaN 1 0 Median 1.2087 1.1192 13.6 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25084000 11261000 13823000 2401200 896870 1504300 22683000 10364000 12319000 0 0 0 0 0 0 0 0 0 0 0 0 14720 2212 15325 75436;75437;75438 76636;76637 76637 2 IGNSYFKEEK ENREDYRQIAKAYARIGNSYFKEEKYKDAI KAYARIGNSYFKEEKYKDAIHFYNKSLAEH R I G E K Y 0 0 1 0 0 0 2 1 0 1 0 2 0 1 0 1 0 0 1 0 0 0 10 1 1213.5979 P31948 P31948 306 315 STIP1 Stress-induced-phosphoprotein 1 yes yes 2;3 0.00092391 119.62 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.2686 1.1929 7.9752 8 Median 1.3254 1.2548 10.185 4 0 Median 1.2768 1.189 1.6115 2 0 Median 1.1344 1.2839 NaN 1 0 Median 1.2046 1.1122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128640000 55920000 72717000 66970000 28614000 38356000 57051000 25304000 31747000 3223400 1426500 1796900 1392800 575600 817230 0 0 0 0 0 0 14721 2212 15326 75439;75440;75441;75442;75443;75444;75445;75446 76638;76639;76640;76641;76642;76643;76644;76645;76646;76647;76648;76649;76650 76645 13 IGNTEDGAPHKEDEPSVGQVAR DHPDFRFRTTDIVIRIGNTEDGAPHKEDEP APHKEDEPSVGQVARVDVSSKVEVVWADNS R I G A R V 2 1 1 2 0 1 3 3 1 1 0 1 0 0 2 1 1 0 0 2 0 0 22 1 2305.0935 Q9C0C9 Q9C0C9 662 683 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 3;4 2.3398E-12 69.361 By MS/MS By MS/MS 2 4 0.96053 0.93703 12.534 6 Median 0.83757 0.84263 12.755 2 0 Median 1.0464 0.99492 10.443 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29295000 14005000 15290000 17829000 8777900 9051500 11465000 5226800 6238600 0 0 0 0 0 0 0 0 0 0 0 0 14722 3904 15327 75447;75448;75449;75450;75451;75452 76651;76652;76653;76654;76655;76656;76657;76658 76656 8 IGNTGGMLDNILASK IGPATVGGIKPGCFKIGNTGGMLDNILASK IGNTGGMLDNILASKLYRPGSVAYVSRSGG K I G S K L 1 0 2 1 0 0 0 3 0 2 2 1 1 0 0 1 1 0 0 0 0 0 15 0 1502.7763 P53396 P53396 636 650 ACLY ATP-citrate synthase yes yes 2 0.00011799 79.492 By MS/MS By matching 2 4 1.2898 1.1318 17.852 6 Median 1.2748 1.2287 13.132 2 0 Median 1.2898 1.1085 21.757 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88257000 36552000 51705000 55159000 22122000 33037000 33098000 14430000 18668000 0 0 0 0 0 0 0 0 0 0 0 0 14723 2467 15328;15329 75453;75454;75455;75456;75457;75458 76659;76660;76661;76662 76662 1155 4 IGPILDNSTLQSEVKPILEK PVANVRFNVAKSLQKIGPILDNSTLQSEVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE K I G E K L 0 0 1 1 0 1 2 1 0 3 3 2 0 0 2 2 1 0 0 1 0 0 20 1 2193.2256 P30153;B3KQV6;E9PH38 P30153 547 566 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2;3 1.2821E-30 137.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 3 0.79594 0.70208 16.138 11 Median 0.75894 0.7059 4.75 2 1 Median 0.74893 0.69713 6.7118 4 0 Median 0.82677 0.86019 NaN 1 0 Median 0.87952 0.87914 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83704 0.71871 22.992 3 0 Plateau 449120000 241290000 207840000 260160000 138040000 122120000 151640000 82149000 69494000 30804000 17576000 13228000 470560 245050 225510 0 0 0 6040800 3278500 2762300 14724 2190 15330 75459;75460;75461;75462;75463;75464;75465;75466;75467;75468;75469 76663;76664;76665;76666;76667;76668;76669;76670;76671;76672;76673;76674 76666 12 IGPITPLEFYR TFTWEYRDKDKNYQKIGPITPLEFYREHVK NYQKIGPITPLEFYREHVKPLFNMEDKVVN K I G Y R E 0 1 0 0 0 0 1 1 0 2 1 0 0 1 2 0 1 0 1 0 0 0 11 0 1304.7129 K7ES02;Q13867;K7ESE8;J3KSD8 K7ES02 245 255 BLMH Bleomycin hydrolase yes no 2 0.036407 46.891 By MS/MS By MS/MS By MS/MS 3 1 1 0.62419 0.63776 80.413 5 Median 0.62419 0.63776 100.93 3 1 Median 0.51393 0.43195 NaN 1 0 Median 0.92958 0.9358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17225000 10063000 7161800 13533000 7995800 5536900 1905300 1136400 768850 1786800 930770 856050 0 0 0 0 0 0 0 0 0 14725 1400 15331 75470;75471;75472;75473;75474 76675;76676;76677 76675 3 IGPLGLSPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI SALAPKIGPLGLSPKKVGDDIAKATGDWKG K I G P K K 0 0 0 0 0 0 0 2 0 1 2 1 0 0 2 1 0 0 0 0 0 0 9 0 880.5382 P30050 P30050 32 40 RPL12 60S ribosomal protein L12 yes yes 2 0.00056881 113.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 0.92224 0.80238 9.5473 14 Median 0.85719 0.80068 8.4419 3 0 Plateau 0.9702 0.80015 1.4615 3 0 Median 0.80068 0.76666 17.105 2 0 Median 1.0349 0.84932 4.986 2 0 Median 0.85503 0.91841 2.2515 2 0 Median 1.0325 0.83947 11.202 2 0 Median 587400000 307510000 279890000 214390000 113480000 100910000 190470000 99725000 90742000 73716000 37960000 35756000 50950000 25589000 25360000 44516000 24292000 20224000 13361000 6466400 6894200 14726 2185 15332 75475;75476;75477;75478;75479;75480;75481;75482;75483;75484;75485;75486;75487;75488 76678;76679;76680;76681;76682;76683;76684;76685;76686;76687;76688;76689;76690;76691;76692;76693;76694;76695;76696;76697;76698;76699;76700;76701;76702 76684 24 IGPLSPFTNAYR QPCHIREAIRRYSHRIGPLSPFTNAYRRNG SHRIGPLSPFTNAYRRNGMAFLAC______ R I G Y R R 1 1 1 0 0 0 0 1 0 1 1 0 0 1 2 1 1 0 1 0 0 0 12 0 1334.6983 O75486;B4E1H0 O75486 297 308 SUPT3H Transcription initiation protein SPT3 homolog yes no 2 0.0047583 42.743 By MS/MS By matching 1 1 0.83543 0.71689 37.648 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9498 0.93555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73482 0.54934 NaN 1 0 Median 6342100 3369300 2972800 0 0 0 0 0 0 2963600 1539300 1424200 0 0 0 0 0 0 3378500 1830000 1548600 14727 1676 15333 75489;75490 76703 76703 1 IGPQQSISTSVGPSASQR QQGLFDVHNEANGIKIGPQQSISTSVGPSA QQSISTSVGPSASQRNSRDIGSNSGCC___ K I G Q R N 1 1 0 0 0 3 0 2 0 2 0 0 0 0 2 5 1 0 0 1 0 0 18 0 1798.9173 Q8WUD1 Q8WUD1 187 204 RAB2B Ras-related protein Rab-2B yes yes 2 5.5465E-06 72.496 By MS/MS 1 0.76619 0.7232 NaN 1 Median 0.76619 0.7232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5273300 3424200 1849000 5273300 3424200 1849000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14728 3489 15334 75491 76704 76704 1 IGPYQPNVPVGIDYVIPK SDENKDDYTIPDEYRIGPYQPNVPVGIDYV YQPNVPVGIDYVIPKTGFYCKLCSLFYTNE R I G P K T 0 0 1 1 0 1 0 2 0 3 0 1 0 0 4 0 0 0 2 3 0 0 18 0 1968.072 P43243;A8MXP9;A0A0R4J2E8;B3KM87;Q68E03 P43243 781 798 MATR3;DKFZp686L22104 Matrin-3 yes no 2;3 5.0409E-06 66.023 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 3 8 2 0.55976 0.58034 17.657 19 Median 0.89513 0.87831 NaN 1 0 Median 0.69414 0.5939 NaN 1 0 Median 0.53009 0.57552 2.9079 4 0 Median 0.722 0.62679 2.4338 3 0 Median 0.53937 0.55401 21.554 8 0 Median 0.6555 0.55412 8.2167 2 0 Median 260130000 165140000 94986000 4112500 2159200 1953300 1152000 653350 498660 119570000 75968000 43600000 5033500 2620400 2413100 129190000 83206000 45984000 1069300 533100 536200 14729 297 15335 75492;75493;75494;75495;75496;75497;75498;75499;75500;75501;75502;75503;75504;75505;75506;75507;75508;75509;75510 76705;76706;76707;76708;76709;76710;76711;76712;76713;76714;76715;76716;76717;76718;76719;76720;76721 76716 17 IGPYTNFVNIGER AFEGHMLLSGLEPFRIGPYTNFVNIGERCN FRIGPYTNFVNIGERCNVAGSRKFAKLIMA R I G E R C 0 1 2 0 0 0 1 2 0 2 0 0 0 1 1 0 1 0 1 1 0 0 13 0 1478.7518 Q99707 Q99707 365 377 MTR Methionine synthase yes yes 2 0.04286 42.001 By MS/MS 1 1.8276 1.7971 NaN 1 Median 1.8276 1.7971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2358100 772760 1585400 2358100 772760 1585400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14730 3763 15336 75511 76722 76722 1 IGQETVQDIVYR AQQAAREVNTASLCRIGQETVQDIVYRTME LCRIGQETVQDIVYRTMEIFQLLRNMQLPN R I G Y R T 0 1 0 1 0 2 1 1 0 2 0 0 0 0 0 0 1 0 1 2 0 0 12 0 1419.7358 Q96HR3 Q96HR3 36 47 MED30 Mediator of RNA polymerase II transcription subunit 30 yes yes 2 2.2125E-15 150.08 By MS/MS 1 1.0479 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0479 1.0065 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21380000 10396000 10984000 0 0 0 0 0 0 21380000 10396000 10984000 0 0 0 0 0 0 0 0 0 14731 3668 15337 75512 76723 76723 1 IGQFVFAR WLLAVRSIQPEEKERIGQFVFARDAKAAMA QPEEKERIGQFVFARDAKAAMAGRLMIRKL R I G A R D 1 1 0 0 0 1 0 1 0 1 0 0 0 2 0 0 0 0 0 1 0 0 8 0 936.51814 Q9NRN7 Q9NRN7 48 55 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes yes 2 0.0023524 114.59 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.2848 1.136 58.108 6 Median 1.2058 1.1269 NaN 1 0 Median 1.2538 1.0314 14.798 2 0 Median 1.2695 1.2558 NaN 1 0 Median 1.3003 1.0919 NaN 1 0 Median 4.2176 4.4918 NaN 1 0 Median NaN NaN NaN 0 0 Median 47582000 20398000 27184000 37915000 16606000 21309000 3587100 1572800 2014300 4216900 1741600 2475300 474840 195590 279250 1388200 282090 1106100 0 0 0 14732 4085 15338 75513;75514;75515;75516;75517;75518 76724;76725 76725 2 IGQGTFGEVFK CPFCDEVSKYEKLAKIGQGTFGEVFKARHR KLAKIGQGTFGEVFKARHRKTGQKVALKKV K I G F K A 0 0 0 0 0 1 1 3 0 1 0 1 0 2 0 0 1 0 0 1 0 0 11 0 1181.6081 P50750;X6RE90 P50750 25 35 CDK9 Cyclin-dependent kinase 9 yes no 2 0.018812 35.511 By MS/MS By matching By matching By matching 1 1 1 1 1.2385 1.0933 25.682 4 Median 1.124 1.0427 NaN 1 0 Median 0.86647 0.76681 NaN 1 0 Median 1.3647 1.4234 NaN 1 0 Median 1.3712 1.1464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20211000 8613400 11598000 11476000 4922900 6552600 599160 348000 251160 7558500 3145800 4412700 578000 196660 381340 0 0 0 0 0 0 14733 2422 15339 75519;75520;75521;75522 76726 76726 1 IGQGYLIK KGYHHRTEINKKIYKIGQGYLIKDGKLIKN INKKIYKIGQGYLIKDGKLIKNNASTDYDL K I G I K D 0 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 890.52255 P39023;G5E9G0;B5MCW2 P39023 287 294 RPL3 60S ribosomal protein L3 yes no 1;2 0.001738 143.02 By MS/MS By MS/MS By matching By MS/MS By matching 6 9 3 2 1 1.2476 1.1432 11.636 21 Median 1.2455 1.2062 5.5032 6 0 Median 1.2238 1.0557 10.113 9 0 Median 1.2342 1.2405 3.2915 3 0 Plateau 1.3232 1.1586 3.7969 2 0 Median 1.3501 1.4172 NaN 1 0 Median NaN NaN NaN 0 0 Median 440380000 203020000 237360000 157320000 73775000 83546000 163210000 74683000 88522000 40896000 18533000 22363000 74818000 33950000 40868000 4136500 2078700 2057800 0 0 0 14734 2281 15340 75523;75524;75525;75526;75527;75528;75529;75530;75531;75532;75533;75534;75535;75536;75537;75538;75539;75540;75541;75542;75543 76727;76728;76729;76730;76731;76732;76733;76734;76735;76736;76737;76738;76739;76740;76741;76742 76740 15 IGQGYLIKDGK KGYHHRTEINKKIYKIGQGYLIKDGKLIKN KIYKIGQGYLIKDGKLIKNNASTDYDLSDK K I G G K L 0 0 0 1 0 1 0 3 0 2 1 2 0 0 0 0 0 0 1 0 0 0 11 1 1190.6659 P39023;G5E9G0;B5MCW2 P39023 287 297 RPL3 60S ribosomal protein L3 yes no 2;3 0.0017112 63.283 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 1.0446 1.0116 17.685 7 Median 1.0507 1.0845 9.8393 2 0 Median 0.88545 0.70642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97523 1.0334 9.4458 2 0 Median 1.2024 1.049 16.872 2 0 Median 46893000 19639000 27255000 27868000 13526000 14341000 4531300 632150 3899100 0 0 0 0 0 0 9155100 3377000 5778100 5339300 2103000 3236300 14735 2281 15341 75544;75545;75546;75547;75548;75549;75550;75551;75552;75553 76743;76744;76745;76746;76747;76748;76749;76750 76749 8 IGQKENVVVYR WNPATDAQAVDRVYRIGQKENVVVYRLITC RVYRIGQKENVVVYRLITCGTVEEKIYRRQ R I G Y R L 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 3 0 0 11 1 1303.7248 B5MDQ0;Q2NKX8 B5MDQ0 450 460 ERCC6L DNA excision repair protein ERCC-6-like yes no 3 0.027917 35.006 By MS/MS 1 1.0725 1.2245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0725 1.2245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1503600 674400 829240 0 0 0 0 0 0 1503600 674400 829240 0 0 0 0 0 0 0 0 0 14736 624 15342 75554 76751 76751 1 IGQLEEQLEQEAK VKSKFKATISALEAKIGQLEEQLEQEAKER AKIGQLEEQLEQEAKERAAANKLVRRTEKK K I G A K E 1 0 0 0 0 3 4 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1513.7624 P35580 P35580 1823 1835 MYH10 Myosin-10 yes yes 2 6.043E-22 169.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.645 0.67491 27.387 5 Median 1.0168 0.97242 NaN 1 0 Median 1.2335 1.0922 NaN 1 0 Median 0.55011 0.606 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62079 0.64562 6.2747 2 1 Median NaN NaN NaN 0 0 Median 96103000 49430000 46674000 44401000 21147000 23254000 21987000 9345200 12641000 19745000 12794000 6951400 0 0 0 9970500 6143000 3827600 0 0 0 14737 2245 15343 75555;75556;75557;75558;75559;75560 76752;76753;76754;76755;76756;76757;76758;76759;76760 76756 9 IGQLEEQLEQEAKER VKSKFKATISALEAKIGQLEEQLEQEAKER IGQLEEQLEQEAKERAAANKLVRRTEKKLK K I G E R A 1 1 0 0 0 3 5 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 15 1 1798.9061 P35580 P35580 1823 1837 MYH10 Myosin-10 yes yes 3 7.937E-05 71.344 By MS/MS By matching 1 1 1.0639 1.0331 1.5187 2 Median 1.0425 1.0443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0858 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19709000 9462600 10246000 18692000 8894400 9798000 0 0 0 0 0 0 1016500 568130 448380 0 0 0 0 0 0 14738 2245 15344 75561;75562 76761;76762 76761 2 IGQLFFGVPPK PSLRRDPMYNEYLDRIGQLFFGVPPKQTSS YLDRIGQLFFGVPPKQTSSYGGLLGNLLTS R I G P K Q 0 0 0 0 0 1 0 2 0 1 1 1 0 2 2 0 0 0 0 1 0 0 11 0 1201.6859 Q7L5D6 Q7L5D6 279 289 GET4 Golgi to ER traffic protein 4 homolog yes yes 2 0.0039952 48.796 By MS/MS By matching 2 1 0.91501 0.86539 12.111 3 Median 0.8416 0.78954 12.974 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0622 0.90542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9617700 4970400 4647300 9298000 4818500 4479600 0 0 0 0 0 0 319670 151920 167760 0 0 0 0 0 0 14739 3225 15345 75563;75564;75565 76763 76763 1 IGQPTVSYFLK PTKILVKPDRTFEIKIGQPTVSYFLKAAAG FEIKIGQPTVSYFLKAAAGIEKGARQTGKE K I G L K A 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 1 1 0 1 1 0 0 11 0 1251.6863 Q9Y3B7 Q9Y3B7 82 92 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.00059752 66.435 By MS/MS By MS/MS 1 1 1.2671 1.1825 7.2541 2 Median 1.2089 1.1234 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3282 1.2448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30646000 14271000 16375000 18597000 9175600 9421400 0 0 0 12049000 5095600 6953200 0 0 0 0 0 0 0 0 0 14740 4416 15346 75566;75567 76764;76765;76766 76764 3 IGQQNEVR WNPHQDLQAQDRAHRIGQQNEVRVLRLCTV AQDRAHRIGQQNEVRVLRLCTVNSVEEKIL R I G V R V 0 1 1 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 942.48829 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;P51531;F6VDE0;A0A0U1RQZ9 P51532 1193 1200 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.047416 35.295 By MS/MS 2 1.0877 1.1819 6.5293 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0877 1.1819 6.5293 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1041900 508940 532930 0 0 0 0 0 0 1041900 508940 532930 0 0 0 0 0 0 0 0 0 14741 366;2433 15347 75568;75569 76767 76767 1 IGQQPQQPGAPPQQDYTK GQSDYTKAWEEYYKKIGQQPQQPGAPPQQD QPQQPGAPPQQDYTKAWEEYYKKQAQVATG K I G T K A 1 0 0 1 0 6 0 2 0 1 0 1 0 0 4 0 1 0 1 0 0 0 18 0 1979.9701 Q92945;A0A087WTP3;M0R0C6;M0QYG1 Q92945 629 646 KHSRP Far upstream element-binding protein 2 yes no 2;3 2.5259E-25 191.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 5 2 2 0.63884 0.54728 19.762 18 Median 0.40866 0.39269 25.669 2 0 Median 0.75584 0.66601 21.54 2 1 Median 0.49903 0.51506 19.598 5 0 Median 0.64498 0.54998 5.9607 5 1 Median 0.53842 0.56566 28.827 2 1 Median 0.6734 0.56212 1.7308 2 0 Median 268450000 166990000 101470000 7106500 4706100 2400400 5475300 3260100 2215100 140910000 90693000 50214000 104290000 62199000 42090000 6956800 3995800 2961000 3720000 2132400 1587600 14742 3568 15348 75570;75571;75572;75573;75574;75575;75576;75577;75578;75579;75580;75581;75582;75583;75584;75585;75586;75587 76768;76769;76770;76771;76772;76773;76774;76775;76776;76777;76778;76779;76780;76781;76782;76783;76784;76785;76786;76787;76788;76789;76790;76791;76792;76793;76794;76795;76796;76797;76798;76799;76800;76801;76802 76793 35 IGQQVDREPGDVATPPR VKKAIFDRLCKQLEKIGQQVDREPGDVATP QQVDREPGDVATPPRKRKKIVVEAPAKEME K I G P R K 1 2 0 2 0 2 1 2 0 1 0 0 0 0 3 0 1 0 0 2 0 0 17 1 1833.9333 Q9Y5N6;H3BT22 Q9Y5N6 182 198 ORC6 Origin recognition complex subunit 6 yes no 3 7.4769E-06 74.786 By matching By MS/MS 1 2 0.61673 0.63945 49.536 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61673 0.63945 NaN 1 0 Median 0.4152 0.38714 56.821 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9536900 6228100 3308900 0 0 0 0 0 0 4529000 2784600 1744500 5007900 3443500 1564400 0 0 0 0 0 0 14743 4464 15349 75588;75589;75590 76803;76804 76803 2 IGQSALYDALFSSQSPK KQDFLKEVVETFANKIGQSALYDALFSSQS QSALYDALFSSQSPKDTSFLGSDDIGKIDV K I G P K D 2 0 0 1 0 2 0 1 0 1 2 1 0 1 1 4 0 0 1 0 0 0 17 0 1810.9101 Q99666;J3KQ37;O14715;F8W705 Q99666 381 397 RGPD5;RGPD8 RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 2 0.067082 31.228 By MS/MS 1 1.0925 1.2121 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0925 1.2121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1290200 685260 604960 0 0 0 0 0 0 1290200 685260 604960 0 0 0 0 0 0 0 0 0 14744 3762 15350 75591 76805 76805 1 IGQSLSSLTSPAEQGVLSEK EDIENHATDVHQAVKIGQSLSSLTSPAEQG SSLTSPAEQGVLSEKIDSLQARYSEIQDRC K I G E K I 1 0 0 0 0 2 2 2 0 1 3 1 0 0 1 5 1 0 0 1 0 0 20 0 2030.0532 H3BPE1;H3BQK9;A0A590UJG2;A0A0A6YYJ5 H3BPE1 5511 5530 MACF1 yes no 2 2.976E-09 85.42 By MS/MS By matching By MS/MS 1 1 1 0.81403 0.81634 13.335 3 Median 0.81403 0.81634 NaN 1 0 Median 1.1551 1.0148 NaN 1 0 Median 0.74129 0.79641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22076000 11929000 10147000 14828000 8137100 6690600 1284800 672810 611960 5963200 3118700 2844400 0 0 0 0 0 0 0 0 0 14745 1220 15351 75592;75593;75594 76806;76807;76808;76809 76809 4 IGQSLSSLTSPAEQGVLSEKIDSLQAR EDIENHATDVHQAVKIGQSLSSLTSPAEQG EQGVLSEKIDSLQARYSEIQDRCCRKAALL K I G A R Y 2 1 0 1 0 3 2 2 0 2 4 1 0 0 1 6 1 0 0 1 0 0 27 1 2813.4771 H3BPE1;H3BQK9;A0A590UJG2 H3BPE1 5511 5537 MACF1 yes no 3 0.0142 16.798 By MS/MS 1 0.85549 0.8772 NaN 1 Median 0.85549 0.8772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3018000 1395600 1622400 3018000 1395600 1622400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14746 1220 15352 75595 76810 76810 1 IGQTIGYQIR AIAVAERVAAERRERIGQTIGYQIRLESRV ERRERIGQTIGYQIRLESRVSPKTLLTFCT R I G I R L 0 1 0 0 0 2 0 2 0 3 0 0 0 0 0 0 1 0 1 0 0 0 10 0 1147.635 Q9H6S0;D6RA70 Q9H6S0 268 277 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.00040021 77.732 By MS/MS By matching 1 1 0.85764 0.75932 35.265 2 Median 1.0364 0.97436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70968 0.59173 NaN 1 0 Median 9586000 4733600 4852400 9293400 4588300 4705100 0 0 0 0 0 0 0 0 0 0 0 0 292550 145350 147200 14747 3977 15353 75596;75597 76811;76812 76811 2 IGQTKPVVVYR WNPQSDLQAQDRCHRIGQTKPVVVYRLVTA RCHRIGQTKPVVVYRLVTANTIDQKIVERA R I G Y R L 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 1 0 1 3 0 0 11 1 1258.7398 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7;Q9NW36 F6XU50 587 597 HELLS Lymphoid-specific helicase yes no 3 0.00037915 60.434 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1 0.92587 0.92669 11.055 7 Median 0.92587 0.95728 NaN 1 0 Median 0.95912 0.96074 NaN 1 0 Median 0.84209 0.9248 13.442 2 0 Median 0.8706 0.83137 15.351 2 0 Median NaN NaN NaN 0 0 Median 0.93289 0.81253 NaN 1 0 Median 18869000 9865400 9004000 910020 546900 363120 1486800 812250 674590 11197000 5889100 5307500 3483600 1704100 1779500 0 0 0 1792400 913050 879340 14748 211 15354 75598;75599;75600;75601;75602;75603;75604;75605 76813;76814;76815;76816;76817;76818;76819;76820;76821 76817 9 IGQVHYALETTVK DVNGTLVSIYAVPEKIGQVHYALETTVKLL EKIGQVHYALETTVKLLEFFQNYFEIQYPL K I G V K L 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 2 0 1 2 0 0 13 0 1457.7878 Q9UIQ6 Q9UIQ6 387 399 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2;3 8.0372E-07 102.4 By MS/MS By matching 2 1 1.4862 1.4392 37.942 3 Median 1.2041 1.1658 29.795 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1476 2.0137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21557000 10443000 11114000 19482000 10052000 9430500 0 0 0 0 0 0 2074500 391150 1683300 0 0 0 0 0 0 14749 4292 15355 75606;75607;75608 76822;76823;76824;76825 76822 4 IGRIEDVTPIPSDSTR GAQSALRALARSGMKIGRIEDVTPIPSDST GRIEDVTPIPSDSTRRKGGRRGRRL_____ K I G T R R 0 2 0 2 0 0 1 1 0 3 0 0 0 0 2 2 2 0 0 1 0 0 16 1 1754.9163 P62263;A0A2R8Y811 P62263 126 141 RPS14 40S ribosomal protein S14 yes no 2;3 1.1261E-09 159.08 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.83114 0.8503 16.125 7 Median 0.79827 0.83672 5.7079 2 0 Median 0.78332 0.7166 24.194 2 0 Median NaN NaN NaN 0 0 Median 1.1174 0.9587 6.9678 2 0 Median 0.68802 0.77322 NaN 1 1 Median NaN NaN NaN 0 0 Median 172220000 93729000 78488000 135410000 74226000 61187000 18574000 9704700 8869600 0 0 0 3383500 1145000 2238500 14846000 8653700 6192500 0 0 0 14750 386 15356 75609;75610;75611;75612;75613;75614;75615 76826;76827;76828;76829;76830;76831;76832;76833;76834;76835;76836 76830 11 IGRIEDVTPIPSDSTRR GAQSALRALARSGMKIGRIEDVTPIPSDST RIEDVTPIPSDSTRRKGGRRGRRL______ K I G R R K 0 3 0 2 0 0 1 1 0 3 0 0 0 0 2 2 2 0 0 1 0 0 17 2 1911.0174 P62263;A0A2R8Y811 P62263 126 142 RPS14 40S ribosomal protein S14 yes no 3;4 6.5112E-11 102.29 By MS/MS By MS/MS By MS/MS 2 2 2 0.77833 0.88119 31.427 6 Median 0.66787 0.70274 22.095 2 0 Median 0.97323 1.1856 32.054 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71295 0.81167 22.445 2 0 Median NaN NaN NaN 0 0 Median 90737000 50316000 40421000 66329000 36633000 29696000 6829700 3667600 3162000 0 0 0 0 0 0 17578000 10015000 7562800 0 0 0 14751 386 15357 75616;75617;75618;75619;75620;75621 76837;76838;76839;76840;76841;76842;76843;76844 76838 7 IGSCTQQDVELHVQK SIVDVEGVVRKVNQKIGSCTQQDVELHVQK IGSCTQQDVELHVQKIYVISLAEPRLPLQL K I G Q K I 0 0 0 1 1 3 1 1 1 1 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1740.8465 P14868;C9J7S3;H7C278;C9JLC1;C9JQM9 P14868 127 141 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 9.8115E-05 58.831 By MS/MS 1 1.3466 1.1474 NaN 1 Median NaN NaN NaN 0 0 Median 1.3466 1.1474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4198500 1588700 2609800 0 0 0 4198500 1588700 2609800 0 0 0 0 0 0 0 0 0 0 0 0 14752 2012 15358 75622 76845 76845 1 IGSDQDLGIELLNVLHR HALQALLDVPWPRSKIGSDQDLGIELLNVL SDQDLGIELLNVLHRVILTRESPSIQLASL K I G H R V 0 1 1 2 0 1 1 2 1 2 4 0 0 0 0 1 0 0 0 1 0 0 17 0 1891.0163 Q86XA9;F5H619;H7C5W6 Q86XA9 1596 1612 HEATR5A HEAT repeat-containing protein 5A yes no 3 0.02732 24.793 By MS/MS 1 0.79699 0.68092 NaN 1 Median NaN NaN NaN 0 0 Median 0.79699 0.68092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930600 2821200 3109400 0 0 0 5930600 2821200 3109400 0 0 0 0 0 0 0 0 0 0 0 0 14753 1039 15359 75623 76846 76846 1 IGSDVELLLR NKSETSSKKIEELMKIGSDVELLLRTSVIQ EELMKIGSDVELLLRTSVIQGIHTDHNTLK K I G L R T 0 1 0 1 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1113.6394 Q5U5X0 Q5U5X0 58 67 LYRM7 Complex III assembly factor LYRM7 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1342 1.0907 25.266 6 Median 0.97244 0.95784 16.34 2 0 Median NaN NaN NaN 0 0 Median 0.92745 0.96391 39.227 2 0 Median 1.2247 1.1064 NaN 1 0 Median 1.4124 1.4505 NaN 1 0 Median NaN NaN NaN 0 0 Median 16442000 8670900 7770800 11859000 6446700 5412600 0 0 0 2765600 1526600 1239000 485690 230910 254780 1331200 466710 864440 0 0 0 14754 3108 15360 75624;75625;75626;75627;75628;75629 76847;76848;76849 76848 3 IGSESTKPPITFDK EDLNLWWAAWNTWYRIGSESTKPPITFDKL RIGSESTKPPITFDKLTFIPSQPFLTALIQ R I G D K L 0 0 0 1 0 0 1 1 0 2 0 2 0 1 2 2 2 0 0 0 0 0 14 1 1518.793 A0A286YFF8;Q7Z3U7 A0A286YFF8 1251 1264 MON2 Protein MON2 homolog yes no 3 0.001185 55.173 By MS/MS 1 1.1446 1.1047 NaN 1 Median 1.1446 1.1047 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11271000 5104500 6166600 11271000 5104500 6166600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14755 353 15361 75630 76850 76850 1 IGSEVQVLGR VAALCALGGFKETIKIGSEVQVLGRGISGS KETIKIGSEVQVLGRGISGSIGVVASINEQ K I G G R G 0 1 0 0 0 1 1 2 0 1 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1056.5928 F8VWT9;J3KPF0;Q9Y4D8 F8VWT9 2034 2043 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 yes no 2 0.013943 59.35 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14756 1070 15362 75631 76851 76851 1 IGSFAEPSSVSFSSK PQVHNTTSRELNVSKIGSFAEPSSVSFSSK IGSFAEPSSVSFSSKEALSFPHLHLRGQRN K I G S K E 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 6 0 0 0 1 0 0 15 0 1528.7409 Q03164 Q03164 2348 2362 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 1.896E-05 72.29 By MS/MS By matching 2 1 0.87819 0.84147 11.94 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7958 0.86995 16.665 2 1 Median 0.93597 0.84147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11479000 6122600 5356200 0 0 0 0 0 0 11169000 5964600 5204300 309830 157960 151870 0 0 0 0 0 0 14757 2708 15363 75632;75633;75634 76852;76853 76853 2 IGSFGPQEDLLFLR EGRDIIVIGNDITYRIGSFGPQEDLLFLRA RIGSFGPQEDLLFLRASELARAEGIPRIYV R I G L R A 0 1 0 1 0 1 1 2 0 1 3 0 0 2 1 1 0 0 0 0 0 0 14 0 1590.8406 Q13085;Q59FY4 Q13085 1688 1701 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 5.754E-08 111.06 By MS/MS 1 0.78321 0.76656 NaN 1 Median 0.78321 0.76656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12225000 6609300 5615500 12225000 6609300 5615500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14758 2784 15364 75635 76854;76855;76856;76857 76857 4 IGSFTIQNVFPQSDGDSSK AFYTNLHEVPYPDARIGSFTIQNVFPQSDG TIQNVFPQSDGDSSKVKVKVRVNIHGIFSV R I G S K V 0 0 1 2 0 2 0 2 0 2 0 1 0 2 1 4 1 0 0 1 0 0 19 0 2025.9643 O95757;E9PDE8;D6RJ96 O95757 459 477 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.050495 19.578 By MS/MS By matching By matching 3 1 2 0.97034 0.93455 12.611 6 Median 1.1201 1.1057 10.508 3 0 Median 0.97168 0.85531 NaN 1 0 Median 0.84524 0.90728 0.39559 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18445000 9525200 8919900 7265700 3665200 3600500 917870 481780 436100 10261000 5378200 4883300 0 0 0 0 0 0 0 0 0 14759 1790 15365 75636;75637;75638;75639;75640;75641 76858 76858 1 IGSGFDNIDIK REDLEKFKALRIIVRIGSGFDNIDIKSAGD IIVRIGSGFDNIDIKSAGDLGIAVCNVPAA R I G I K S 0 0 1 2 0 0 0 2 0 3 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1177.5979 Q13363;D6RAX2;E7ESU7;E7EPF8;E9PGB1;H0Y8W7 Q13363 98 108 CTBP1 C-terminal-binding protein 1 yes no 2 0.00013831 97.456 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.0835 1.1062 15.187 5 Median 1.0835 1.018 NaN 1 0 Median 1.4373 1.2309 NaN 1 0 Median 0.98051 0.98064 17.034 2 0 Median 1.3986 1.262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135550000 63185000 72361000 6297200 2668800 3628400 2567400 926390 1641000 88541000 44721000 43820000 38141000 14869000 23272000 0 0 0 0 0 0 14760 2808 15366 75642;75643;75644;75645;75646 76859;76860;76861;76862;76863;76864;76865 76864 7 IGSGYDNVDIK REDLEKFKALRVIVRIGSGYDNVDIKAAGE VIVRIGSGYDNVDIKAAGELGIAVCNIPSA R I G I K A 0 0 1 2 0 0 0 2 0 2 0 1 0 0 0 1 0 0 1 1 0 0 11 0 1179.5772 P56545 P56545 104 114 CTBP2 C-terminal-binding protein 2 yes yes 2 0.00018241 77.662 By MS/MS By MS/MS By matching 2 1 1 1.0504 1.0581 20.323 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0504 1.0581 13.547 2 0 Median 1.5427 1.3924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85694 0.88376 NaN 1 0 Median 109500000 46939000 62561000 0 0 0 0 0 0 65281000 29959000 35322000 42103000 16075000 26028000 0 0 0 2116300 905100 1211200 14761 2514 15367 75647;75648;75649;75650 76866;76867;76868 76866 3 IGSLASGNVR APKPQDKKSMGLPPRIGSLASGNVRSLPSQ GLPPRIGSLASGNVRSLPSQQMVNRLSIPK R I G V R S 1 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 10 0 972.53524 Q9H2P0;A0A2R8Y6X0 Q9H2P0 287 296 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00038082 89.355 By matching By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 4 1.1918 1.0067 24.327 10 Median NaN NaN NaN 0 0 Median 1.2015 1.0179 7.4297 2 0 Median 0.88443 0.96288 NaN 1 0 Median 1.5427 1.297 59.361 2 0 Median 0.97272 1.006 NaN 1 0 Median 1.2738 1.0633 16.438 4 0 Median 17929000 8675200 9254300 0 0 0 2351200 1150800 1200400 1699600 1111900 587720 1208600 416140 792450 7787100 3813700 3973400 4883000 2182600 2700300 14762 3946 15368 75651;75652;75653;75654;75655;75656;75657;75658;75659;75660 76869;76870;76871;76872;76873;76874;76875 76869 7 IGSLIDVNQSK EIVIGDEHISFTTSKIGSLIDVNQSKDPEG TTSKIGSLIDVNQSKDPEGLRVFYYLVQDL K I G S K D 0 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1172.6401 P61326;F5H6P7;Q96A72 Q96A72 106 116 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 8.7445E-05 150.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 3 3 1.1253 1.031 55.707 13 Median 0.53551 0.49559 114.29 2 1 Median 0.53541 0.44435 66.519 3 2 Median 1.1078 1.0448 NaN 1 0 Median 1.319 1.0715 1.6373 2 0 Median 1.049 1.1567 16.279 2 1 Median 1.1253 0.91725 6.776 3 0 Median 238940000 117500000 121450000 53916000 28477000 25439000 32047000 18091000 13956000 76963000 35330000 41633000 42761000 18447000 24314000 18585000 9769800 8815100 14673000 7381600 7291500 14763 2556;3596 15369 75661;75662;75663;75664;75665;75666;75667;75668;75669;75670;75671;75672;75673;75674 76876;76877;76878;76879;76880;76881;76882;76883;76884;76885;76886;76887;76888;76889;76890;76891;76892;76893;76894;76895;76896;76897;76898 76877 23 IGSLIDVNQSKDPEGLR EIVIGDEHISFTTSKIGSLIDVNQSKDPEG SLIDVNQSKDPEGLRVFYYLVQDLKCLVFS K I G L R V 0 1 1 2 0 1 1 2 0 2 2 1 0 0 1 2 0 0 0 1 0 0 17 1 1839.969 P61326;F5H6P7;Q96A72 Q96A72 106 122 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3 6.6951E-06 74.772 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1682 1.1666 11.728 5 Median 1.2487 1.2333 NaN 1 0 Median 1.1655 1.0282 NaN 1 0 Median 0.96654 1.0021 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1682 1.3182 NaN 1 0 Median 1.4586 1.1666 NaN 1 0 Median 32724000 13355000 19369000 9917400 3508400 6408900 1622700 747660 875040 12296000 5908800 6386900 0 0 0 7886000 2826200 5059900 1002100 364330 637790 14764 2556;3596 15370 75675;75676;75677;75678;75679 76899;76900;76901;76902;76903;76904;76905 76900 6 IGSNMESLLQK NGMYCSLYEVVEKTRIGSNMESLLQKLDRE EKTRIGSNMESLLQKLDREKLVLVKPLGDR R I G Q K L 0 0 1 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 0 0 0 0 11 0 1218.6278 Q9UK61 Q9UK61 440 450 FAM208A Protein FAM208A yes yes 2 0.0055202 66.435 By MS/MS 1 2.0194 2.1139 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0194 2.1139 NaN 1 1 Median NaN NaN NaN 0 0 Median 10653000 3749700 6903000 0 0 0 0 0 0 0 0 0 0 0 0 10653000 3749700 6903000 0 0 0 14765 4307 15371 75680 76906 76906 1 IGSTENISNTKEPSEKLESTSSK APAKKIKLNRETGKKIGSTENISNTKEPSE NTKEPSEKLESTSSKVKQEKVKGKVRRKVT K I G S K V 0 0 2 0 0 0 4 1 0 2 1 3 0 0 1 6 3 0 0 0 0 0 23 2 2465.2133 Q7Z6E9;A0A2R8Y880 Q7Z6E9 1219 1241 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 4 0.020565 14.584 By MS/MS 1 0.674 0.78089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.674 0.78089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9957100 5746400 4210700 0 0 0 0 0 0 9957100 5746400 4210700 0 0 0 0 0 0 0 0 0 14766 3251 15372 75681 76907;76908 76908 2 IGSTIDDTISK SAFPFSDKLGELSDKIGSTIDDTISKFRRK LSDKIGSTIDDTISKFRRKDREDSPERCSD K I G S K F 0 0 0 2 0 0 0 1 0 3 0 1 0 0 0 2 2 0 0 0 0 0 11 0 1148.5925 Q14677 Q14677 208 218 CLINT1 Clathrin interactor 1 yes yes 2 0.0002117 98.943 By MS/MS By MS/MS 2 1 1.249 1.1918 7.5702 3 Median NaN NaN NaN 0 0 Median 1.3306 1.118 9.3472 2 0 Median 1.185 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28950000 13220000 15730000 0 0 0 13435000 6249000 7185600 15516000 6971000 8544800 0 0 0 0 0 0 0 0 0 14767 2888 15373 75682;75683;75684 76909;76910;76911 76910 3 IGSTIFGER ADFQHAVEVGSTNVRIGSTIFGERDYSKKP GSTNVRIGSTIFGERDYSKKPTPDKCAADV R I G E R D 0 1 0 0 0 0 1 2 0 2 0 0 0 1 0 1 1 0 0 0 0 0 9 0 978.51345 O94903 O94903 242 250 PROSC Proline synthase co-transcribed bacterial homolog protein yes yes 2 0.001584 79.906 By MS/MS 1 1.0362 0.96985 NaN 1 Median 1.0362 0.96985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17813000 8862000 8951300 17813000 8862000 8951300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14768 1734 15374 75685 76912 76912 1 IGSVAPDTINNHVK LTCDTIFIQHNGLIKIGSVAPDTINNHVKT KIGSVAPDTINNHVKTCREEQKNLHFFAPE K I G V K T 1 0 2 1 0 0 0 1 1 2 0 1 0 0 1 1 1 0 0 2 0 0 14 0 1463.7732 Q9UHY1 Q9UHY1 218 231 NRBP1 Nuclear receptor-binding protein yes yes 3 0.00020979 61.03 By MS/MS 1 0.95377 0.91061 NaN 1 Median 0.95377 0.91061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5781700 2959900 2821800 5781700 2959900 2821800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14769 4285 15375 75686 76913;76914 76913 2 IGSYLSASTR EQGPIRCNTTVCLGKIGSYLSASTRHRVLT VCLGKIGSYLSASTRHRVLTSAFSRATRDP K I G T R H 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 3 1 0 1 0 0 0 10 0 1053.5455 E9PPN3;E9PS17;E9PK59;Q96KG9;H0YCI6;A0A0A0MQX4 E9PPN3 312 321 SCYL1 N-terminal kinase-like protein yes no 2 0.022498 36.424 By matching By matching By MS/MS 2 1 1 0.88491 0.82236 26.165 4 Median 0.7483 0.73954 2.8042 2 0 Median 1.0317 0.89651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4937 1.2868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7216000 3978500 3237400 3496400 2276100 1220300 2119100 1015100 1104000 0 0 0 1600400 687290 913110 0 0 0 0 0 0 14770 945 15376 75687;75688;75689;75690 76915 76915 1 IGTAEPDYGALYEGR KMKLRYPINEEALEKIGTAEPDYGALYEGR IGTAEPDYGALYEGRNPGFYVEANPMPTFK K I G G R N 2 1 0 1 0 0 2 3 0 1 1 0 0 0 1 0 1 0 2 0 0 0 15 0 1610.7577 P19174 P19174 764 778 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 1.2016E-08 106.01 By MS/MS By matching By matching 2 1 1 1.0337 0.94652 56.97 4 Median 0.58115 0.55289 63.38 2 1 Median 1.2092 1.0351 NaN 1 0 Median 1.1907 1.2958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32095000 21315000 10779000 28274000 19762000 8511900 2160300 856680 1303600 1660000 696310 963710 0 0 0 0 0 0 0 0 0 14771 2062 15377 75691;75692;75693;75694 76916;76917 76916 2 IGTDIQDNK DDYLDLFGDPSVTGKIGTDIQDNKCSWLVV PSVTGKIGTDIQDNKCSWLVVQCLQRATPE K I G N K C 0 0 1 2 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 0 9 0 1002.4982 P14324;A0A087X090 P14324 324 332 FDPS Farnesyl pyrophosphate synthase yes no 2 0.019275 40.002 By MS/MS 1 1.3833 1.1666 NaN 1 Median NaN NaN NaN 0 0 Median 1.3833 1.1666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1693500 738770 954770 0 0 0 1693500 738770 954770 0 0 0 0 0 0 0 0 0 0 0 0 14772 2002 15378 75695 76918 76918 1 IGTFDLK NAVYDFFIGRELNPRIGTFDLKYFCELRPG IGRELNPRIGTFDLKYFCELRPGLIGWVVI R I G L K Y 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 7 0 792.43815 Q14739;A0A494C1L1 Q14739 378 384 LBR Lamin-B receptor yes no 2 0.022334 73.616 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9534100 0 9534100 0 0 0 5583400 0 5583400 3950700 0 3950700 0 0 0 0 0 0 0 0 0 14773 2897 15379 75696;75697 76919;76920 76920 2 IGTIYEGASNIQLNTIAK YTKDYPVEKYFRDAKIGTIYEGASNIQLNT IYEGASNIQLNTIAKHIDAEY_________ K I G A K H 2 0 2 0 0 1 1 2 0 4 1 1 0 0 0 1 2 0 1 0 0 0 18 0 1905.0207 P45954 P45954 409 426 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 6.8161E-11 99.531 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1505 1.2419 29.071 5 Median 0.93256 0.881 4.8324 2 0 Median 1.9479 1.6843 NaN 1 0 Median 1.1505 1.2419 NaN 1 0 Median 1.6626 1.4255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25679000 12295000 13385000 21440000 10412000 11029000 813850 295140 518710 3243400 1521900 1721500 181760 65888 115870 0 0 0 0 0 0 14774 2330 15380 75698;75699;75700;75701;75702 76921;76922;76923 76922 3 IGTLEKEHNVFQNK EKERSNVVITRMKDRIGTLEKEHNVFQNKI RIGTLEKEHNVFQNKIHVSYQETQQMQMKF R I G N K I 0 0 2 0 0 1 2 1 1 1 1 2 0 1 0 0 1 0 0 1 0 0 14 1 1655.8631 Q86UP2 Q86UP2 380 393 KTN1 Kinectin yes yes 2;3;4 0.0040985 64.711 By MS/MS By MS/MS 4 1 1.1849 1.159 21.656 5 Median 1.1458 1.113 13.072 4 1 Median NaN NaN NaN 0 0 Median 1.5212 1.741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25932000 11329000 14602000 22369000 9585200 12784000 0 0 0 3562900 1744300 1818600 0 0 0 0 0 0 0 0 0 14775 3280 15381 75703;75704;75705;75706;75707 76924;76925;76926;76927;76928 76924 5 IGTLGSATTELLSGSTR ESDGETSDTEKHGTKIGTLGSATTELLSGS TLGSATTELLSGSTRTADEKEEDDRILKTS K I G T R T 1 1 0 0 0 0 1 3 0 1 3 0 0 0 0 3 4 0 0 0 0 0 17 0 1662.8788 H3BNX5;H3BSS6;Q9H2Y7 H3BNX5 387 403 ZNF106 Zinc finger protein 106 yes no 2 1.9562E-11 93.959 By MS/MS 1 1.2661 1.3659 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2661 1.3659 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4602400 1985400 2617000 0 0 0 0 0 0 4602400 1985400 2617000 0 0 0 0 0 0 0 0 0 14776 1216 15382 75708 76929 76929 1 IGTNQMAVCAK VGAEGVVENGGIINKIGTNQMAVCAKAQNK IINKIGTNQMAVCAKAQNKPFYVVAESFKF K I G A K A 2 0 1 0 1 1 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 11 0 1191.574 Q14232 Q14232 210 220 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 2 0.0044404 69.423 By MS/MS 2 1.3094 1.1046 3.5293 2 Median NaN NaN NaN 0 0 Median 1.3094 1.1046 3.5293 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3333200 1440600 1892600 0 0 0 3333200 1440600 1892600 0 0 0 0 0 0 0 0 0 0 0 0 14777 2866 15383 75709;75710 76930;76931 76931 2 IGTSNYYWAFPSK VLQSLVDDGMVDCERIGTSNYYWAFPSKAL ERIGTSNYYWAFPSKALHARKHKLEVLESQ R I G S K A 1 0 1 0 0 0 0 1 0 1 0 1 0 1 1 2 1 1 2 0 0 0 13 0 1532.73 Q9BWT6;D6RCT6;A0A087WTC6;D6RIA0;D6R9E3 Q9BWT6 65 77 MND1 Meiotic nuclear division protein 1 homolog yes no 2 0.00091964 62.303 By matching By matching By MS/MS 1 1 2 1.0029 0.91647 36.306 4 Median 0.60384 0.59892 NaN 1 0 Median 1.1368 1.0022 NaN 1 0 Median 1.1033 1.0951 37.836 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15312000 7453600 7858500 4758200 2648200 2110000 440370 218750 221620 10114000 4586700 5526900 0 0 0 0 0 0 0 0 0 14778 3875 15384 75711;75712;75713;75714 76932;76933 76933 2 IGVADVDMSR RHYWEVTVKRSQQFRIGVADVDMSRDSCIG SQQFRIGVADVDMSRDSCIGVDDRSWVFTY R I G S R D 1 1 0 2 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 2 0 0 10 0 1061.5175 Q8WW59 Q8WW59 102 111 SPRYD4 SPRY domain-containing protein 4 yes yes 2 0.001604 64.04 By MS/MS 1 1.3847 1.1483 NaN 1 Median NaN NaN NaN 0 0 Median 1.3847 1.1483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6585900 2560300 4025600 0 0 0 6585900 2560300 4025600 0 0 0 0 0 0 0 0 0 0 0 0 14779 3506 15385 75715 76934 76934 1 IGVAIGDQILDLSIIK LPYGVFSTRGDPRPRIGVAIGDQILDLSII GVAIGDQILDLSIIKHLFTGPVLSKHQDVF R I G I K H 1 0 0 2 0 1 0 2 0 5 2 1 0 0 0 1 0 0 0 1 0 0 16 0 1666.9869 P16930;H0YLC7 P16930 32 47 FAH Fumarylacetoacetase yes no 2 3.7217E-05 81.431 By MS/MS 1 1.4206 1.2157 NaN 1 Median NaN NaN NaN 0 0 Median 1.4206 1.2157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5245800 2114400 3131300 0 0 0 5245800 2114400 3131300 0 0 0 0 0 0 0 0 0 0 0 0 14780 2032 15386 75716 76935;76936 76935 2 IGVAILQR DYEAVFVGNIDDHFRIGVAILQRSIRLYAP NIDDHFRIGVAILQRSIRLYAPFYSSDILI R I G Q R S 1 1 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 868.54944 Q68CQ4;H7C2R4 Q68CQ4 427 434 DIEXF Digestive organ expansion factor homolog yes no 2 0.0033897 89.673 By MS/MS 1 1.233 1.3211 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.233 1.3211 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3846300 1315800 2530500 0 0 0 0 0 0 3846300 1315800 2530500 0 0 0 0 0 0 0 0 0 14781 3123 15387 75717 76937 76937 1 IGVDHVAR FAELTYTLATEEAERIGVDHVARMTATGSG ATEEAERIGVDHVARMTATGSGENSTVAEH R I G A R M 1 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 865.477 Q7L5N1;E7EM64;H7C3T0 Q7L5N1 198 205 COPS6 COP9 signalosome complex subunit 6 yes no 2 0.018519 47.849 By MS/MS By matching By matching 1 2 1 1.2813 1.1087 9.2945 4 Median 1.1057 1.0664 NaN 1 0 Median 1.3387 1.1604 14.43 2 0 Median NaN NaN NaN 0 0 Median 1.3279 1.1526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2377100 1076400 1300700 865710 427560 438150 1409300 600960 808350 0 0 0 102110 47890 54224 0 0 0 0 0 0 14782 855 15388 75718;75719;75720;75721 76938 76938 1 IGVDLIMK FTPLTVKYAYYDTERIGVDLIMKTCFSPNR AYYDTERIGVDLIMKTCFSPNRVIGLSSDL R I G M K T 0 0 0 1 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 1 0 0 8 0 887.51502 O00303 O00303 247 254 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.0055542 75.109 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1.1876 1.0993 17.723 7 Median 1.1876 1.0993 NaN 1 0 Median 1.2343 1.0648 11.977 2 0 Median 0.98885 0.96634 NaN 1 0 Median 1.4023 1.2503 NaN 1 0 Median 1.4454 1.3882 NaN 1 0 Median 0.99811 0.81891 NaN 1 0 Median 32841000 14835000 18006000 13985000 6400800 7584100 8674900 3826100 4848800 6956800 3220800 3735900 1512200 706180 806000 1587800 617910 969850 124160 62766 61398 14783 1457 15389 75722;75723;75724;75725;75726;75727;75728 76939;76940;76941;76942 76940 4 IGVLDEGK RRLFEGNALLRRLVRIGVLDEGKMKLDYIL LLRRLVRIGVLDEGKMKLDYILGLKIEDFL R I G G K M 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 P46781;B5MCT8;C9JM19 P46781 84 91 RPS9 40S ribosomal protein S9 yes no 2 0.0040608 83.753 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1.2057 1.1316 17.777 8 Median 1.3026 1.2611 25.86 2 0 Median 1.1327 0.94565 NaN 1 0 Median 1.1152 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2391 1.3489 9.7206 2 0 Median 1.3164 1.0898 15.864 2 0 Median 103720000 46445000 57276000 57408000 25886000 31522000 15497000 7287500 8210000 12414000 5702400 6711500 0 0 0 13962000 5815300 8146800 4439000 1753700 2685300 14784 2345 15390 75729;75730;75731;75732;75733;75734;75735;75736 76943;76944;76945;76946;76947;76948;76949;76950;76951;76952 76943 10 IGVMSLIR GVPREGLSRQHVLTRIGVMSLIRKKVQEFE RQHVLTRIGVMSLIRKKVQEFEHVNGRWSM R I G I R K 0 1 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 0 0 1 0 0 8 0 887.52626 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1496 1503 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 6.5083E-06 164.89 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 5 3 1 1 1.3804 1.2567 16.476 13 Median 1.352 1.3561 NaN 1 0 Median 1.1702 0.99173 20.68 2 0 Median 1.2284 1.3388 11.543 5 1 Median 1.4171 1.1885 6.1476 3 0 Median 1.4 1.4254 NaN 1 0 Median 1.8453 1.5172 NaN 1 0 Median 83272000 37579000 45694000 1108800 469540 639240 1982700 722910 1259700 49637000 22754000 26883000 3176300 1356800 1819600 26883000 12113000 14770000 483930 162350 321580 14785 246 15391;15392 75737;75738;75739;75740;75741;75742;75743;75744;75745;75746;75747;75748;75749 76953;76954;76955;76956;76957;76958;76959;76960;76961 76960 101 9 IGVPSATEIIK QLVQVEQKAGIKFKRIGVPSATEIIKASSK KFKRIGVPSATEIIKASSKDAIRLLDSVPP R I G I K A 1 0 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1126.6598 Q9NR30 Q9NR30 563 573 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00068187 64.711 By matching By MS/MS By MS/MS By matching By matching By matching 2 3 1 2 2 1 1.0634 0.9567 18.663 11 Median 1.0801 1.0665 0.96085 2 0 Median 1.0251 0.8968 29.686 3 0 Median 1.1615 1.2433 NaN 1 0 Median 1.1594 1.0002 12.076 2 0 Median 0.92614 0.92862 4.2128 2 0 Median 1.1015 0.91386 NaN 1 0 Median 133480000 61364000 72115000 10318000 4471700 5846200 20602000 9279400 11323000 62879000 28929000 33950000 6814300 3121800 3692500 31225000 14778000 16447000 1641500 784000 857480 14786 4076 15393 75750;75751;75752;75753;75754;75755;75756;75757;75758;75759;75760 76962;76963;76964;76965;76966;76967 76965 6 IGVSFIDDGSNATDLLR AKYKLHGFQYPPGNRIGVSFIDDGSNATDL VSFIDDGSNATDLLRKMATQMVAAQLASMV R I G L R K 1 1 1 3 0 0 0 2 0 2 2 0 0 1 0 2 1 0 0 1 0 0 17 0 1791.9003 Q8IUH3 Q8IUH3 317 333 RBM45 RNA-binding protein 45 yes yes 2 0.00022024 47.288 By MS/MS 1 1.1127 1.1196 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1127 1.1196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3158200 1497700 1660500 0 0 0 0 0 0 3158200 1497700 1660500 0 0 0 0 0 0 0 0 0 14787 3314 15394 75761 76968;76969 76968 2 IGVSSDSGSINPMSEGFK TSTGNFKFGDQGGFKIGVSSDSGSINPMSE SSDSGSINPMSEGFKFSKPIGDFKFGVSSE K I G F K F 0 0 1 1 0 0 1 3 0 2 0 1 1 1 1 5 0 0 0 1 0 0 18 0 1810.8407 P49790 P49790 934 951 NUP153 Nuclear pore complex protein Nup153 yes yes 2 9.6092E-14 120.84 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 3 2 0.89421 0.96128 27.392 10 Median 0.71193 0.68419 NaN 1 1 Median 1.4069 1.284 NaN 1 0 Median 0.87966 0.94846 15.958 3 0 Median 1.115 1.015 22.425 3 0 Median 1.1015 1.1595 47.855 2 0 Median NaN NaN NaN 0 0 Median 48083000 26731000 21353000 5785500 3091300 2694100 219740 99526 120210 32677000 18933000 13744000 2310200 1206100 1104100 7091200 3400900 3690300 0 0 0 14788 2400 15395;15396 75762;75763;75764;75765;75766;75767;75768;75769;75770;75771 76970;76971;76972;76973;76974;76975;76976;76977;76978 76972 1109 9 IGVVGGSDFEK ______________________________ QKIKIGVVGGSDFEKVQEQLGNDVVEKYDY K I G E K V 0 0 0 1 0 0 1 3 0 1 0 1 0 1 0 1 0 0 0 2 0 0 11 0 1106.5608 H3BV55;O15305;H3BPH4;H3BRM0;H3BR08;H3BM92;H3BV34;H3BT06;H3BNY9 H3BV55 14 24 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 2 0.00035099 96.143 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 2 5 1 0.99752 1.4649 24.631 16 Linear 1.1416 0.98343 10.448 3 1 Median 1.2293 0.99511 41.04 3 0 Plateau 1.0304 1.0084 2.1467 2 1 Median 1.171 0.91291 17.938 2 0 Median 0.90363 0.89506 29.131 5 0 Median 1.1996 0.97751 NaN 1 0 Median 604630000 292480000 312150000 160080000 76055000 84021000 48323000 21547000 26776000 172490000 85394000 87092000 77277000 32688000 44588000 142140000 74707000 67435000 4323800 2089700 2234000 14789 1240 15397 75772;75773;75774;75775;75776;75777;75778;75779;75780;75781;75782;75783;75784;75785;75786;75787 76979;76980;76981;76982 76979 4 IGYLGAMLLLDER ECLKLIASQKFTDKRIGYLGAMLLLDERQD KRIGYLGAMLLLDERQDVHLLMTNCIKNDL R I G E R Q 1 1 0 1 0 0 1 2 0 1 4 0 1 0 0 0 0 0 1 0 0 0 13 0 1462.7854 O43747;H3BRM7;H3BN71;B4DGE1;H3BR36;H3BUN9;H3BNR4 O43747 84 96 AP1G1 AP-1 complex subunit gamma-1 yes no 2 0.036319 60.434 By matching By MS/MS 1 1 1.1427 1.0638 5.0772 2 Median 1.1025 1.1027 NaN 1 0 Median 1.1843 1.0263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3248000 1477400 1770600 257240 133740 123500 2990800 1343700 1647100 0 0 0 0 0 0 0 0 0 0 0 0 14790 1587 15398 75788;75789 76983 76983 0 IGYNPATVPFVPISGWHGDNMLEPSPNMPWFK RYDEIVKEVSAYIKKIGYNPATVPFVPISG GDNMLEPSPNMPWFKGWKVERKEGNASGVS K I G F K G 1 0 3 1 0 0 1 3 1 2 1 1 2 2 6 2 1 2 1 2 0 0 32 0 3597.7214 A0A2U3TZH3;Q05639 A0A2U3TZH3 181 212 EEF1A2 Elongation factor 1-alpha 2 yes no 3 0.062656 14.085 By MS/MS 1 0.45952 0.45165 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45952 0.45165 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5666300 4577700 1088600 0 0 0 0 0 0 5666300 4577700 1088600 0 0 0 0 0 0 0 0 0 14791 404 15399 75790 76984 76984 1 IGYSSPQTLADQSSK LELSAELVCLSHGCRIGYSSPQTLADQSSK IGYSSPQTLADQSSKIKKGSKGDTSMLKPT R I G S K I 1 0 0 1 0 2 0 1 0 1 1 1 0 0 1 4 1 0 1 0 0 0 15 0 1580.7682 O95573 O95573 349 363 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.00026146 70.488 By MS/MS By MS/MS 2 3 0.98904 0.86233 31.73 5 Median 0.61464 0.59284 16.436 2 0 Median 1.2276 1.0906 13.571 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18958000 10078000 8880900 11499000 6493300 5005300 7459800 3584300 3875600 0 0 0 0 0 0 0 0 0 0 0 0 14792 1780 15400 75791;75792;75793;75794;75795 76985;76986;76987;76988 76986 3 IHAEVQLK SPDWEFDRVDDGSQKIHAEVQLKNYGKFLE VDDGSQKIHAEVQLKNYGKFLEEYTSQLRR K I H L K N 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 936.53927 A0A087X256;Q2M389;F8VYH7 A0A087X256 22 29 KIAA1033 WASH complex subunit 7 yes no 2 0.0069176 82.241 By MS/MS 2 1.4651 1.2599 NaN 1 Median NaN NaN NaN 0 0 Median 1.4651 1.2599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4063500 1692800 2370600 0 0 0 4063500 1692800 2370600 0 0 0 0 0 0 0 0 0 0 0 0 14793 129 15401 75796;75797 76989;76990 76989 2 IHAFVQDTTLSEPR SNESHCSLQIKALAKIHAFVQDTTLSEPRQ KIHAFVQDTTLSEPRQAEIRKECLRLWGIP K I H P R Q 1 1 0 1 0 1 1 0 1 1 1 0 0 1 1 1 2 0 0 1 0 0 14 0 1612.8209 Q8N1G2 Q8N1G2 514 527 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2;3 3.533E-06 88.087 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.0407 1.0263 13.885 7 Median 1.089 1.053 9.4118 3 1 Median 1.1714 1.0186 15.369 2 1 Median 0.96901 1.0263 NaN 1 0 Median 0.90503 0.77992 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48716000 23142000 25574000 21627000 9502600 12125000 3293200 1549400 1743800 20069000 10161000 9907400 3726900 1928300 1798600 0 0 0 0 0 0 14794 3358 15402 75798;75799;75800;75801;75802;75803;75804 76991;76992;76993;76994;76995;76996 76993 6 IHAGPITK HIDLPNEQARLDILKIHAGPITKHGEIDYE ARLDILKIHAGPITKHGEIDYEAIVKLSDG K I H T K H 1 0 0 0 0 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 0 0 8 0 835.49159 A0A087X2I1;P62333 A0A087X2I1 329 336 PSMC6 26S protease regulatory subunit 10B yes no 2 0.045902 35.618 By matching By MS/MS By matching 1 1 1 1.048 0.94671 16.803 3 Median 0.96224 0.94671 NaN 1 0 Median 1.048 0.89934 NaN 1 0 Median 1.138 1.2302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4844600 2400700 2444000 646850 338210 308640 3960400 1950200 2010100 237430 112230 125200 0 0 0 0 0 0 0 0 0 14795 138 15403 75805;75806;75807 76997 76997 1 IHALPTGDASK TIKYGGDEIPYSPFRIHALPTGDASKCLVT SPFRIHALPTGDASKCLVTVSIGGHGLGAC R I H S K C 2 0 0 1 0 0 0 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 11 0 1108.5877 Q14315 Q14315 1628 1638 FLNC Filamin-C yes yes 2 0.014119 37.191 By MS/MS 1 0.83507 0.72539 NaN 1 Median NaN NaN NaN 0 0 Median 0.83507 0.72539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 829960 426320 403640 0 0 0 829960 426320 403640 0 0 0 0 0 0 0 0 0 0 0 0 14796 2871 15404 75808 76998;76999 76999 2 IHALTSENTNLKK QLSELKKKCGEDQEKIHALTSENTNLKKMM EKIHALTSENTNLKKMMSNQYVPVKTHEEV K I H K K M 1 0 2 0 0 0 1 0 1 1 2 2 0 0 0 1 2 0 0 0 0 0 13 1 1467.8045 F5H2B9;H0YNH8;Q9BZF9 F5H2B9 732 744 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.049014 13.137 By matching By MS/MS 1 2 0.87684 1.1403 28.199 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80971 0.91762 NaN 1 0 Median 1.1549 1.0879 37.378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1173800 543280 630490 0 0 0 0 0 0 402670 194070 208600 771100 349200 421900 0 0 0 0 0 0 14797 1026 15405 75809;75810;75811 77000 77000 1 IHAYSQLLESYR WLFAPHYRYYVREMRIHAYSQLLESYRSLT EMRIHAYSQLLESYRSLTLGYMAEAFGVGV R I H Y R S 1 1 0 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 2 0 0 0 12 0 1478.7518 Q15008 Q15008 301 312 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2;3 8.8595E-07 147.12 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.1255 1.1346 37.936 8 Median 1.1365 1.1404 0.25264 2 0 Median 1.1154 0.97208 14.984 3 0 Median 1.2249 1.338 23.787 2 0 Median 0.50219 0.43273 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 212500000 98467000 114030000 98403000 48373000 50030000 75143000 33976000 41167000 35690000 13876000 21813000 3264400 2241300 1023100 0 0 0 0 0 0 14798 2911 15406 75812;75813;75814;75815;75816;75817;75818;75819 77001;77002;77003;77004;77005;77006;77007;77008;77009;77010;77011;77012 77006 12 IHAYVDYPIYDVLQMVGHANRPLQDDEGR AHLVIIMDTQYYNGKIHAYVDYPIYDVLQM MVGHANRPLQDDEGRCVIMCQGSKKDFFKK K I H G R C 2 2 1 4 0 2 1 2 2 2 2 0 1 0 2 0 0 0 3 3 0 0 29 1 3383.6357 O75643 O75643 1673 1701 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 2.317E-09 47.018 By MS/MS 2 0.38719 0.391 101.34 2 Median NaN NaN NaN 0 0 Median 0.38719 0.391 101.34 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9132800 4679800 4453100 0 0 0 9132800 4679800 4453100 0 0 0 0 0 0 0 0 0 0 0 0 14799 1688 15407 75820;75821 77013;77014;77015 77015 3 IHCLENVDK LSGERLPKPTKGRMRIHCLENVDKALQFLK TKGRMRIHCLENVDKALQFLKEQRVHLENM R I H D K A 0 0 1 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1126.5441 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4;P11277 Q01082 110 118 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 2 0.048927 31.304 By MS/MS 1 1.1912 1.0381 NaN 1 Median NaN NaN NaN 0 0 Median 1.1912 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3330200 1510100 1820100 0 0 0 3330200 1510100 1820100 0 0 0 0 0 0 0 0 0 0 0 0 14800 2681;1512;1960 15408 75822 77016 77016 1 IHDLALR DILAGTRMDLGECTKIHDLALRADYEIASK MDLGECTKIHDLALRADYEIASKERDLFFE K I H L R A 1 1 0 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 836.48684 Q9NQ29;A8MYV2;B8ZZ12 Q9NQ29 62 68 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 0.016273 69.093 By MS/MS 1 0.96892 1.0254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96892 1.0254 NaN 1 0 Median NaN NaN NaN 0 0 Median 13221000 6709100 6511900 0 0 0 0 0 0 0 0 0 0 0 0 13221000 6709100 6511900 0 0 0 14801 4058 15409 75823 77017 77017 1 IHDPQLLTER DMFMRGEEILSGAQRIHDPQLLTERALHHG SGAQRIHDPQLLTERALHHGIDLEKIKAYI R I H E R A 0 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1220.6513 P14868;H7BZ35 P14868 432 441 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2;3 0.00039049 103.55 By MS/MS By MS/MS By MS/MS 3 2 2 0.98922 0.93947 23.1 7 Median 0.80145 0.80373 26.257 3 1 Median 1.2167 1.0302 9.3427 2 0 Median NaN NaN NaN 0 0 Median 1.1249 0.9637 18.206 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48137000 24750000 23387000 24376000 12862000 11514000 11192000 5529000 5662800 0 0 0 12570000 6359700 6209900 0 0 0 0 0 0 14802 2012 15410 75824;75825;75826;75827;75828;75829;75830 77018;77019;77020;77021;77022;77023;77024;77025 77023 8 IHEAAVQELR QEVTELKKTLEEETRIHEAAVQELRQRHGQ EEETRIHEAAVQELRQRHGQALGELAEQLE R I H L R Q 2 1 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1164.6251 Q7Z406;A0A0C4DFM8 Q7Z406 1206 1215 MYH14 Myosin-14 yes no 2 0.00095656 69.812 By MS/MS 1 1.2814 1.0886 NaN 1 Median NaN NaN NaN 0 0 Median 1.2814 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3297500 1422900 1874700 0 0 0 3297500 1422900 1874700 0 0 0 0 0 0 0 0 0 0 0 0 14803 3242 15411 75831 77026;77027 77027 2 IHEATGMPAGK FTLPLTDQVSVIKVKIHEATGMPAGKQKLQ IKVKIHEATGMPAGKQKLQYEGIFIKDSNS K I H G K Q 2 0 0 0 0 0 1 2 1 1 0 1 1 0 1 0 1 0 0 0 0 0 11 0 1110.5492 Q15459 Q15459 744 754 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.03568 29.473 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.87435 0.8512 39.006 5 Median 0.66548 0.67646 NaN 1 0 Median 1.8684 1.8485 NaN 1 0 Median 0.87435 0.91538 NaN 1 0 Median 1.0018 0.8512 NaN 1 0 Median 0.76387 0.78434 NaN 1 0 Median NaN NaN NaN 0 0 Median 2315000 1148800 1166200 163260 99584 63678 486850 166870 319980 468980 247540 221440 439970 194160 245800 755900 440610 315290 0 0 0 14804 2954 15412 75832;75833;75834;75835;75836 77028 77028 1 IHEDIFDIIDR GAGNNWASGFSQGEKIHEDIFDIIDREADG QGEKIHEDIFDIIDREADGSDSLEGFVLCH K I H D R E 0 1 0 3 0 0 1 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1384.6987 P23258;Q9NRH3;K7EIS0;K7EKE5 P23258 114 124 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 3 0.00098105 49.5 By MS/MS By matching By matching 1 1 2 1.2605 1.1834 12.406 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1986 1.1946 NaN 1 0 Median 1.0894 0.95575 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4265 1.2215 5.8203 2 0 Median 7203000 3241900 3961100 0 0 0 0 0 0 6738400 3051900 3686400 160770 70954 89821 0 0 0 303840 118990 184850 14805 2108 15413 75837;75838;75839;75840 77029;77030 77029 2 IHEDSTGGIYTVGVTTR TTRDIDAKSKKSNIRIHEDSTGGIYTVGVT EDSTGGIYTVGVTTRTVNTESEMMQCLKLG R I H T R T 0 1 0 1 0 0 1 3 1 2 0 0 0 0 0 1 4 0 1 2 0 0 17 0 1804.8955 A0A1B0GV47;Q7Z4S6 A0A1B0GV47 168 184 KIF21A Kinesin-like protein KIF21A yes no 3 1.9801E-05 50.053 By MS/MS By matching 1 1 1.1099 0.99047 3.5629 2 Median 1.0226 0.96583 NaN 1 0 Median 1.2046 1.0157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8702600 3558000 5144600 6493400 2816800 3676600 2209200 741240 1467900 0 0 0 0 0 0 0 0 0 0 0 0 14806 325 15414 75841;75842 77031 77031 1 IHEEFSEHALLR VEEFMLLANISVAKKIHEEFSEHALLRKHP AKKIHEEFSEHALLRKHPAPPPSNYEILVK K I H L R K 1 1 0 0 0 0 3 0 2 1 2 0 0 1 0 1 0 0 0 0 0 0 12 0 1479.747 Q9Y2L1;G3V1J5 Q9Y2L1 678 689 DIS3 Exosome complex exonuclease RRP44 yes no 3 3.5622E-05 89.301 By matching By MS/MS By MS/MS 1 1 1 1.0481 1.1177 10.743 3 Median 1.0012 1.2439 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0481 1.1177 NaN 1 1 Median 1.1819 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15645000 7692800 7952600 4538600 2268500 2270100 0 0 0 5646800 2930700 2716000 5460000 2493600 2966400 0 0 0 0 0 0 14807 4384 15415 75843;75844;75845 77032;77033 77033 2 IHEGCEEPATHNALAK KRNRLKLLLPWLEARIHEGCEEPATHNALA HEGCEEPATHNALAKIYIDSNNNPERFLRE R I H A K I 3 0 1 0 1 0 3 1 2 1 1 1 0 0 1 0 1 0 0 0 0 0 16 0 1775.8261 A0A087WVQ6;Q00610 A0A087WVQ6 870 885 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3;4 3.6974E-05 61.444 By matching By MS/MS 2 5 1.1122 0.98605 11.818 7 Median 1.2328 1.2006 13.241 2 0 Median 1.1058 0.96427 5.0805 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21489000 10042000 11447000 553870 282600 271270 20935000 9759100 11176000 0 0 0 0 0 0 0 0 0 0 0 0 14808 44 15416 75846;75847;75848;75849;75850;75851;75852 77034;77035;77036;77037;77038;77039;77040 77037 7 IHEMLQPGQDQ KRAQELEGKLNFLTKIHEMLQPGQDQ____ FLTKIHEMLQPGQDQ_______________ K I H D Q - 0 0 0 1 0 3 1 1 1 1 1 0 1 0 1 0 0 0 0 0 0 0 11 0 1294.5976 J3KQL8;Q9BQE5 J3KQL8 439 449 APOL2 Apolipoprotein L2 yes no 2 0.0062477 64.42 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1451400 0 0 0 0 0 1451400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14809 1320 15417 75853 77041 77041 1 IHEPIMLK LYDVMKSKKHRTWQKIHEPIMLKYLELCVD KHRTWQKIHEPIMLKYLELCVDLRKSHLAK K I H L K Y 0 0 0 0 0 0 1 0 1 2 1 1 1 0 1 0 0 0 0 0 0 0 8 0 979.55247 Q14152 Q14152 46 53 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0028313 104.37 By MS/MS By MS/MS By matching 1 2 1 0.98919 0.94551 10.527 4 Median 0.91479 0.88191 NaN 1 0 Median 1.0797 0.9377 11.02 2 0 Median 0.99986 1.0754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31979000 16267000 15712000 16697000 9104100 7592500 13451000 6259000 7191800 1831600 904070 927480 0 0 0 0 0 0 0 0 0 14810 2860 15418 75854;75855;75856;75857 77042;77043;77044;77045;77046;77047;77048 77043 7 IHETIESINQLK ASTTNQQEIASLDVKIHETIESINQLKTQR DVKIHETIESINQLKTQRDFMLSFSTDPQD K I H L K T 0 0 1 0 0 1 2 0 1 3 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1423.7671 J3KMX2;B9EGA3;Q92925;Q6STE5 J3KMX2 365 376 SMARCD2;SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 no no 2;3 1.0136E-06 163.94 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 5 2 1 1.1241 0.99198 15.057 12 Median 1.0393 0.99121 NaN 1 0 Median 1.2002 1.0362 NaN 1 0 Median 0.94619 0.91603 1.4647 2 0 Median 1.2455 1.0689 17.24 5 0 Median 1.2083 1.1525 25.079 2 0 Median 1.0821 0.9034 NaN 1 0 Median 101910000 50010000 51903000 12260000 5938600 6321700 3039000 1413600 1625400 51997000 26066000 25931000 23825000 11128000 12697000 8716500 4208300 4508100 2075300 1256000 819310 14811 655;3183 15419 75858;75859;75860;75861;75862;75863;75864;75865;75866;75867;75868;75869 77049;77050;77051;77052;77053;77054;77055;77056 77050 8 IHETIETINQLK LSTASQQEIATLDNKIHETIETINQLKTQR DNKIHETIETINQLKTQREFMLSFARDPQG K I H L K T 0 0 1 0 0 1 2 0 1 3 1 1 0 0 0 0 2 0 0 0 0 0 12 0 1437.7827 Q96GM5;F8VRQ4;H0YHV1 Q96GM5 424 435 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2;3 3.335E-05 155.42 By MS/MS By MS/MS By matching 2 4 1 1.3612 1.1667 22.374 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0098 0.99096 3.1555 2 0 Median 1.4494 1.2435 11.375 4 0 Median 1.7469 1.8514 NaN 1 0 Median NaN NaN NaN 0 0 Median 37591000 17191000 20400000 0 0 0 0 0 0 24757000 12308000 12449000 9626500 4176300 5450200 3207900 706520 2501400 0 0 0 14812 3659 15420 75870;75871;75872;75873;75874;75875;75876 77057;77058;77059;77060;77061;77062;77063;77064 77058 8 IHETQPLLNLK KYLQTSKYCPMCNIKIHETQPLLNLKLDRV CNIKIHETQPLLNLKLDRVMQDIVYKLVPG K I H L K L 0 0 1 0 0 1 1 0 1 1 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1304.7452 Q9BSM1 Q9BSM1 89 99 PCGF1 Polycomb group RING finger protein 1 yes yes 2;3 8.3909E-06 128.28 By MS/MS By MS/MS By matching 3 1 1 0.91212 0.87953 10.351 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91212 0.86375 7.9109 3 2 Median 1.2326 1.0179 NaN 1 0 Median 0.86356 0.88841 NaN 1 0 Median NaN NaN NaN 0 0 Median 22995000 11554000 11441000 0 0 0 0 0 0 18480000 9591400 8888100 1035600 485370 550190 3480100 1477300 2002800 0 0 0 14813 3819 15421 75877;75878;75879;75880;75881 77065;77066;77067;77068;77069 77068 5 IHFFLSK TIAQGKGQKLCEIERIHFFLSKKKTDELRN QKLCEIERIHFFLSKKKTDELRNLHKLLYN R I H S K K 0 0 0 0 0 0 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 0 7 0 890.50142 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;A0A494C198;D6RDA2;D6R9L5 H0Y993 94 100 DEK Protein DEK yes no 2 0.0066125 92.467 By MS/MS By MS/MS By MS/MS By matching 4 4 2 3 1.1409 1.0432 15.776 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98859 0.94293 7.0494 4 0 Median 1.2953 1.0894 9.5102 4 0 Median 1.0832 1.056 2.7354 2 0 Median 1.42 1.1539 27.889 3 0 Median 319220000 152490000 166730000 0 0 0 0 0 0 180630000 90723000 89908000 102160000 46146000 56013000 15980000 7451200 8529000 20444000 8168900 12276000 14814 1166 15422 75882;75883;75884;75885;75886;75887;75888;75889;75890;75891;75892;75893;75894 77070;77071;77072;77073;77074;77075;77076;77077;77078;77079;77080;77081;77082;77083;77084 77073 15 IHFGQITSNQMLVPVIEK SDVELICRCLFFLLRIHFGQITSNQMLVPV GQITSNQMLVPVIEKLRETTISKVSQVRDV R I H E K L 0 0 1 0 0 2 1 1 1 3 1 1 1 1 1 1 1 0 0 2 0 0 18 0 2053.103 Q9UNX4 Q9UNX4 862 879 WDR3 WD repeat-containing protein 3 yes yes 3 0.0016985 26.808 By MS/MS By matching 1 1 1.1265 1.0952 21.438 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1968 1.2745 NaN 1 0 Median 1.0603 0.94117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2151100 1012100 1139000 0 0 0 0 0 0 2071700 973290 1098500 79308 38765 40543 0 0 0 0 0 0 14815 4351 15423 75895;75896 77085;77086 77086 2 IHFHNLQGEK SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG HHLGRIHFHNLQGEKFYNAGLAYCHSKLAN R I H E K F 0 0 1 0 0 1 1 1 2 1 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1221.6255 Q8TC12;G3V2G6;H0YIZ8;G3V234;H0YJ46 Q8TC12 185 194 RDH11 Retinol dehydrogenase 11 yes no 3 0.041142 18.957 By matching By MS/MS 1 1 1.1576 1.0551 7.5957 2 Median 1.1299 1.1133 NaN 1 0 Median 1.186 0.9999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2082900 940100 1142800 353560 195860 157700 1729400 744240 985140 0 0 0 0 0 0 0 0 0 0 0 0 14816 3464 15424 75897;75898 77087 77087 1 IHFPLATYAPVISAEK VDLTEFQTNLVPYPRIHFPLATYAPVISAE HFPLATYAPVISAEKAYHEQLSVAEITNAC R I H E K A 3 0 0 0 0 0 1 0 1 2 1 1 0 1 2 1 1 0 1 1 0 0 16 0 1755.956 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 265 280 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 9.9877E-10 101.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 12 5 10 10 17 0.92581 0.78537 40.762 68 Median 4.5359 0.74115 48.847 14 2 Linear 0.91193 0.76872 24.481 12 0 Median 0.81664 0.87578 25.89 5 0 Median 0.92294 0.80472 8.8262 10 0 Median 1.5435 1.5541 31.945 10 2 Median 0.97143 0.79829 11.842 17 0 Median 893850000 453400000 440450000 284110000 155620000 128490000 338240000 174060000 164180000 69687000 33209000 36478000 60508000 30960000 29549000 85310000 33792000 51518000 55996000 25761000 30235000 14817 2633;3212;1034 15425 75899;75900;75901;75902;75903;75904;75905;75906;75907;75908;75909;75910;75911;75912;75913;75914;75915;75916;75917;75918;75919;75920;75921;75922;75923;75924;75925;75926;75927;75928;75929;75930;75931;75932;75933;75934;75935;75936;75937;75938;75939;75940;75941;75942;75943;75944;75945;75946;75947;75948;75949;75950;75951;75952;75953;75954;75955;75956;75957;75958;75959;75960;75961;75962;75963;75964;75965;75966 77088;77089;77090;77091;77092;77093;77094;77095;77096;77097;77098;77099;77100;77101;77102;77103;77104;77105;77106;77107;77108;77109;77110;77111;77112;77113;77114;77115;77116;77117;77118;77119;77120;77121;77122;77123;77124;77125;77126;77127;77128;77129;77130;77131;77132;77133;77134;77135;77136;77137;77138;77139;77140;77141;77142;77143;77144;77145;77146;77147;77148;77149;77150;77151;77152;77153;77154;77155;77156;77157;77158;77159;77160;77161;77162;77163;77164;77165;77166;77167;77168;77169;77170;77171;77172;77173;77174;77175;77176;77177;77178;77179;77180;77181;77182;77183;77184;77185;77186;77187;77188;77189;77190;77191;77192;77193;77194;77195;77196;77197;77198;77199 77112 111 IHFRPELPAER CKYVINAIPPTLTAKIHFRPELPAERNQLI LTAKIHFRPELPAERNQLIQRLPMGAVIKC K I H E R N 1 2 0 0 0 0 2 0 1 1 1 0 0 1 2 0 0 0 0 0 0 0 11 1 1363.7361 P21397 P21397 281 291 MAOA Amine oxidase [flavin-containing] A yes yes 3 0.0019628 59.57 By MS/MS 1 0.69981 0.68948 NaN 1 Median 0.69981 0.68948 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11883000 7098100 4785300 11883000 7098100 4785300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14818 2089 15426 75967 77200 77200 1 IHGLLEAGR KLEDFMSTMDANGERIHGLLEAGRQLVSEG DANGERIHGLLEAGRQLVSEGNIHADKIRE R I H G R Q 1 1 0 0 0 0 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 964.54541 O15020 O15020 1228 1236 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.019166 58.981 By MS/MS By MS/MS 1 2 0.76499 0.61736 62.639 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76499 0.61736 62.639 2 0 Median 2779000 1377100 1401900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2779000 1377100 1401900 14819 1512 15427 75968;75969;75970 77201;77202 77202 2 IHGMDASISVKPK NVFVCDQKCNIADIKIHGMDASISVKPKQT IKIHGMDASISVKPKQTDVFARLKDIIVMN K I H P K Q 1 0 0 1 0 0 0 1 1 2 0 2 1 0 1 2 0 0 0 1 0 0 13 1 1381.7388 Q709C8;A0A3B3IT88 Q709C8 1624 1636 VPS13C Vacuolar protein sorting-associated protein 13C yes no 3 0.048349 26.627 By MS/MS 1 1.4338 1.5483 NaN 1 Median 1.4338 1.5483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 991390 297080 694320 991390 297080 694320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14820 3205 15428 75971 77203 77203 1 IHGTEEGQQILK LQLQDCSIFIKIIDRIHGTEEGQQILKQPV IDRIHGTEEGQQILKQPVSERLDFVCSFLQ R I H L K Q 0 0 0 0 0 2 2 2 1 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.7096 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5H068;F5H073;F5GWK2;F5GWA2;F5H4Y4;F5H7R5;Q14980 Q14980 43 54 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 7.0125E-41 223.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 6 5 1.0539 0.99078 25.059 19 Median NaN NaN NaN 0 0 Median 1.1651 1.0511 4.0266 3 0 Median 0.90167 0.99078 15.896 3 0 Median 1.1133 1.001 2.7974 2 0 Median 0.94541 0.99024 44.455 6 0 Median 1.066 0.94127 5.6994 5 0 Median 150480000 73348000 77131000 0 0 0 15177000 6988300 8189100 58388000 29747000 28641000 17087000 7847700 9238800 44138000 21094000 23044000 15689000 7670300 8018300 14821 2905;77 15429 75972;75973;75974;75975;75976;75977;75978;75979;75980;75981;75982;75983;75984;75985;75986;75987;75988;75989;75990 77204;77205;77206;77207;77208;77209;77210;77211;77212;77213;77214;77215;77216;77217;77218;77219;77220 77210 17 IHGTEEGQQILKQPVSER LQLQDCSIFIKIIDRIHGTEEGQQILKQPV TEEGQQILKQPVSERLDFVCSFLQKNRKHP R I H E R L 0 1 0 0 0 3 3 2 1 2 1 1 0 0 1 1 1 0 0 1 0 0 18 1 2048.0651 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5H068;F5H073;F5GWK2;F5GWA2;Q14980 Q14980 43 60 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 2.2497E-06 59.434 By MS/MS 1 0.76264 0.91245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76264 0.91245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3900100 1839500 2060600 0 0 0 0 0 0 3900100 1839500 2060600 0 0 0 0 0 0 0 0 0 14822 2905;77 15430 75991 77221;77222 77221 2 IHGVGFK NEVVTREYTINIHKRIHGVGFKKRAPRALK YTINIHKRIHGVGFKKRAPRALKEIRKFAM R I H F K K 0 0 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 756.42826 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 33 39 RPL31 60S ribosomal protein L31 yes no 1 0.0067772 61.006 By MS/MS 1 1.1887 1.0424 NaN 1 Median NaN NaN NaN 0 0 Median 1.1887 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 377690 159630 218060 0 0 0 377690 159630 218060 0 0 0 0 0 0 0 0 0 0 0 0 14823 2607 15431 75992 77223 77223 1 IHGVGFKK NEVVTREYTINIHKRIHGVGFKKRAPRALK TINIHKRIHGVGFKKRAPRALKEIRKFAMK R I H K K R 0 0 0 0 0 0 0 2 1 1 0 2 0 1 0 0 0 0 0 1 0 0 8 1 884.52322 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 33 40 RPL31 60S ribosomal protein L31 yes no 2 0.051739 37.646 By matching By MS/MS 1 2 1.1551 1.0275 7.9814 3 Median 1.1551 1.1723 NaN 1 0 Median 1.1667 1.0213 0.85063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3024300 1323800 1700500 1432900 627410 805490 1591400 696400 895050 0 0 0 0 0 0 0 0 0 0 0 0 14824 2607 15432 75993;75994;75995 77224 77224 1 IHGYVDEVMTR VNLQPTKHDRHADLRIHGYVDEVMTRLMKH ADLRIHGYVDEVMTRLMKHLGLEIPAWDGP R I H T R L 0 1 0 1 0 0 1 1 1 1 0 0 1 0 0 0 1 0 1 2 0 0 11 0 1318.634 Q8N6T7;M0QZ09 Q8N6T7 254 264 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 2;3 4.6137E-05 113.93 By MS/MS By matching 2 1 1.2978 1.4064 41.791 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5514 1.686 25.645 2 1 Median NaN NaN NaN 0 0 Median 0.84536 0.8783 NaN 1 0 Median NaN NaN NaN 0 0 Median 22614000 9523200 13090000 0 0 0 0 0 0 16092000 6156400 9935600 0 0 0 6521600 3366800 3154800 0 0 0 14825 3390 15433 75996;75997;75998 77225;77226;77227 77227 3 IHHEMQVLEK GEFQELMKLALNQGKIHHEMQVLEKEVEKR LNQGKIHHEMQVLEKEVEKRDSDIQQLQKQ K I H E K E 0 0 0 0 0 1 2 0 2 1 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1262.6441 Q9NPJ6;Q5T911 Q9NPJ6 89 98 MED4 Mediator of RNA polymerase II transcription subunit 4 yes no 3 0.051124 31.758 By matching By MS/MS By matching 1 1 1 1.404 1.1831 7.7979 3 Median NaN NaN NaN 0 0 Median 1.5221 1.2898 NaN 1 0 Median 1.1539 1.1039 NaN 1 0 Median 1.404 1.1831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7613900 3672400 3941400 0 0 0 1000400 419350 581070 3639500 1804300 1835200 2974000 1448800 1525200 0 0 0 0 0 0 14826 4056 15434 75999;76000;76001 77228 77228 0 IHIDLPNEQAR TLDPALLRPGRLDRKIHIDLPNEQARLDIL LDRKIHIDLPNEQARLDILKIHAGPITKHG K I H A R L 1 1 1 1 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1304.6837 A0A087X2I1;P62333 A0A087X2I1 313 323 PSMC6 26S protease regulatory subunit 10B yes no 2;3 3.7501E-05 87.298 By MS/MS By MS/MS 2 2 0.98158 0.8935 15.417 4 Median 0.97411 0.96999 18.25 2 1 Median 0.98158 0.84767 14.081 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29291000 15356000 13935000 23055000 12398000 10657000 6235800 2957800 3278000 0 0 0 0 0 0 0 0 0 0 0 0 14827 138 15435 76002;76003;76004;76005 77229;77230;77231;77232;77233;77234;77235 77230 7 IHIEMIEEAIR I H I R 1 1 0 0 0 0 3 0 1 4 0 0 1 0 0 0 0 0 0 0 0 0 11 0 1352.7122 REV__O00327 yes yes 2 0.0057019 49.813 By MS/MS 1 1.1761 1.008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1761 1.008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116690000 45902000 70790000 0 0 0 0 0 0 0 0 0 116690000 45902000 70790000 0 0 0 0 0 0 + 14828 4531 15436 76006 77236 77236 2005 1 IHIPFISK IRTQVLIKLIKPYTRIHIPFISKELNIDVA LIKPYTRIHIPFISKELNIDVADVESLLVQ R I H S K E 0 0 0 0 0 0 0 0 1 3 0 1 0 1 1 1 0 0 0 0 0 0 8 0 953.56984 P61201;B4DIH5;H0YMC2 P61201 369 376 COPS2 COP9 signalosome complex subunit 2 yes no 2 0.044676 35.88 By MS/MS 1 1.2126 1.1632 NaN 1 Median 1.2126 1.1632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2817200 1546200 1270900 2817200 1546200 1270900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14829 2548 15437 76007 77237 77237 1 IHISQEDNVANK IFSPANRRRGRPPKRIHISQEDNVANKQTL PKRIHISQEDNVANKQTLASYRSKATKERD R I H N K Q 1 0 2 1 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1366.6841 Q9NRL2 Q9NRL2 283 294 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 0.00041189 51.979 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.84167 0.86693 43.465 5 Median 0.88977 0.91902 NaN 1 0 Median 0.84167 0.80581 NaN 1 0 Median 0.77781 0.86693 NaN 1 0 Median 0.83972 0.76199 85.353 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6279200 3235300 3043900 473500 279710 193790 845140 403630 441510 3581500 1935500 1645900 1379100 616400 762650 0 0 0 0 0 0 14830 4084 15438 76008;76009;76010;76011;76012 77238;77239 77238 2 IHKELNDLAR ______________________________ MALKRIHKELNDLARDPPAQCSAGPVGDDM R I H A R D 1 1 1 1 0 0 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1207.6673 P62837 P62837 6 15 UBE2D2 Ubiquitin-conjugating enzyme E2 D2 yes yes 3 0.0047196 38.783 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0767 1.0184 98.447 6 Median 1.0655 1.0506 10.406 2 0 Median 1.1065 0.9765 11.952 2 0 Median 1.1509 1.2002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10672 0.095236 NaN 1 0 Median 9727400 4941600 4785800 2856000 1341400 1514600 2768400 1287800 1480600 3044300 1392100 1652200 0 0 0 0 0 0 1058700 920230 138420 14831 2599 15439 76013;76014;76015;76016;76017;76018 77240;77241;77242;77243;77244;77245 77245 6 IHLAQSLHK KKEHDPVGQMVNNPKIHLAQSLHKLSTACP MVNNPKIHLAQSLHKLSTACPGRVPSMVST K I H H K L 1 0 0 0 0 1 0 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1045.6033 P55060 P55060 926 934 CSE1L Exportin-2 yes yes 2 0.00051347 118.74 By MS/MS By MS/MS By MS/MS 3 2 1 1.219 1.1268 14.828 6 Median 1.2448 1.2208 19.587 3 0 Plateau 1.3105 1.1268 3.78 2 0 Median NaN NaN NaN 0 0 Median 1.0664 0.90897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25001000 10710000 14291000 4405600 1979900 2425700 20215000 8542900 11672000 0 0 0 380410 187430 192980 0 0 0 0 0 0 14832 2493 15440 76019;76020;76021;76022;76023;76024 77246;77247;77248;77249;77250;77251 77250 6 IHLLAAR DVAQLRSPLPRGIIRIHLLAARGLSSKDKY PLPRGIIRIHLLAARGLSSKDKYVKGLIEG R I H A R G 2 1 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 792.49701 Q9BSJ8 Q9BSJ8 333 339 ESYT1 Extended synaptotagmin-1 yes yes 2 0.036256 59.641 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9482400 0 9482400 1172800 0 1172800 8309600 0 8309600 0 0 0 0 0 0 0 0 0 0 0 0 14833 3816 15441 76025;76026 77252;77253 77253 2 IHLMPSMNPDGYEK FGTDPEVTDLVHNTRIHLMPSMNPDGYEKS RIHLMPSMNPDGYEKSQEGDSISVIGRNNS R I H E K S 0 0 1 1 0 0 1 1 1 1 1 1 2 0 2 1 0 0 1 0 0 0 14 0 1630.7483 O75976 O75976 600 613 CPD Carboxypeptidase D yes yes 3 0.00062211 43.813 By MS/MS By MS/MS 1 1 0.73901 0.68178 13.497 2 Median 0.64177 0.61972 NaN 1 0 Median 0.85099 0.75005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9628800 5864200 3764500 7858200 4803100 3055100 1770600 1061200 709430 0 0 0 0 0 0 0 0 0 0 0 0 14834 1714 15442 76027;76028 77254;77255 77254 2 IHLTENGIR ISEHAVFNVDLMSKKIHLTENGIRVDIGDT DLMSKKIHLTENGIRVDIGDTIIYLVH___ K I H I R V 0 1 1 0 0 0 1 1 1 2 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1051.5774 Q9P2J5 Q9P2J5 1156 1164 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.028308 50.607 By MS/MS 1 1.3743 1.1722 NaN 1 Median NaN NaN NaN 0 0 Median 1.3743 1.1722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3214700 1435500 1779200 0 0 0 3214700 1435500 1779200 0 0 0 0 0 0 0 0 0 0 0 0 14835 4224 15443 76029 77256 77256 1 IHLVSEPSITHFLQVSWEK ______________________________ SEPSITHFLQVSWEKTLESGFVITLTDGHS R I H E K T 0 0 0 0 0 1 2 0 2 2 2 1 0 1 1 3 1 1 0 2 0 0 19 0 2249.1845 Q13426 Q13426 8 26 XRCC4 DNA repair protein XRCC4 yes yes 3 0.0035099 25.508 By MS/MS By matching 1 1 0.89276 0.78767 1.0245 2 Median NaN NaN NaN 0 0 Median 0.90932 0.79339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87651 0.78198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1896500 898700 997800 0 0 0 1188200 546100 642060 0 0 0 708350 352610 355740 0 0 0 0 0 0 14836 2815 15444 76030;76031 77257 77257 1 IHMGSCAENTAK EDLIVKDGLTDVYNKIHMGSCAENTAKKLN YNKIHMGSCAENTAKKLNIARNEQDAYAIN K I H A K K 2 0 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 0 0 0 0 0 12 0 1317.5806 P24752 P24752 191 202 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2;3 0.0032239 36.417 By MS/MS 2 1.4679 1.3007 2.9429 2 Median NaN NaN NaN 0 0 Median 1.4679 1.3007 2.9429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1033400 414520 618920 0 0 0 1033400 414520 618920 0 0 0 0 0 0 0 0 0 0 0 0 14837 2126 15445 76032;76033 77258;77259;77260 77258 3 IHMVYSK SKLRREFEVYGPIKRIHMVYSKRSGKPRGY EVYGPIKRIHMVYSKRSGKPRGYAFIEYEH R I H S K R 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 1 1 0 0 7 0 876.45276 P08621;M0QYR1 P08621 132 138 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.044421 42.914 By MS/MS By matching 1 1 1.1988 1.13 1.4599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1 1.1184 NaN 1 0 Median 1.3065 1.1417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4193600 1833500 2360100 0 0 0 0 0 0 3708800 1609800 2099000 484820 223700 261120 0 0 0 0 0 0 14838 1905 15446 76034;76035 77261 77261 1 IHNAELQR DLVLNGNEIGGGSIRIHNAELQRYILATLL IGGGSIRIHNAELQRYILATLLKEDVKMLS R I H Q R Y 1 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 979.51993 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3IS01 Q6PI48 543 550 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.027344 41.227 By matching By MS/MS By matching 1 1 1 1.0431 1.0176 20.647 3 Median 1.0431 1.0176 NaN 1 0 Median 1.6564 1.4303 NaN 1 0 Median 0.95596 0.98537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246000 1062000 1184000 421300 287480 133810 1193500 432090 761400 631190 342450 288750 0 0 0 0 0 0 0 0 0 14839 3171 15447 76036;76037;76038 77262 77262 1 IHNAENIQPGEQK RPEEADETWDSKEDKIHNAENIQPGEQKYE DKIHNAENIQPGEQKYEYKSDQWKPLNLEE K I H Q K Y 1 0 2 0 0 2 2 1 1 2 0 1 0 0 1 0 0 0 0 0 0 0 13 0 1476.7321 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 417 429 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.0013956 38.799 By MS/MS By matching 1 1 0.73861 0.64249 5.8738 2 Median NaN NaN NaN 0 0 Median 0.75749 0.66973 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72019 0.61635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2430400 1299000 1131400 0 0 0 2113000 1120700 992360 0 0 0 317360 178370 138990 0 0 0 0 0 0 14840 894 15448 76039;76040 77263;77264 77263 2 IHNAENIQPGEQKYEYK RPEEADETWDSKEDKIHNAENIQPGEQKYE NAENIQPGEQKYEYKSDQWKPLNLEEKKRY K I H Y K S 1 0 2 0 0 2 3 1 1 2 0 2 0 0 1 0 0 0 2 0 0 0 17 1 2059.9963 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 417 433 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3;4 9.7981E-06 53.328 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.90365 0.87609 23.144 5 Median 0.79629 0.77517 17.307 2 0 Median 0.85546 0.8343 NaN 1 0 Median 0.90751 1.0411 NaN 1 1 Median 1.3468 1.2637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21711000 10938000 10774000 16248000 8264900 7982900 991900 531870 460030 2139800 1007100 1132600 2332000 1134000 1198000 0 0 0 0 0 0 14841 894 15449 76041;76042;76043;76044;76045 77265;77266;77267;77268;77269;77270;77271 77266 7 IHNANPELTDGQIQAMLR WRLRRLLLEDLVKKKIHNANPELTDGQIQA ANPELTDGQIQAMLRRWFVEVEGTVKAYVW K I H L R R 2 1 2 1 0 2 1 1 1 2 2 0 1 0 1 0 1 0 0 0 0 0 18 0 2020.016 Q13085;Q59FY4 Q13085 2232 2249 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 5.1361E-06 75.695 By MS/MS 1 1.1097 1.1123 NaN 1 Median 1.1097 1.1123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4865700 2343300 2522400 4865700 2343300 2522400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14842 2784 15450 76046 77272;77273 77272 2 IHNEDNSQFKDHPTLNDR RLERVRNLHIRELKRIHNEDNSQFKDHPTL EDNSQFKDHPTLNDRYLLLHLLGRGGFSEV R I H D R Y 0 1 3 3 0 1 1 0 2 1 1 1 0 1 1 1 1 0 0 0 0 0 18 1 2179.0043 Q86UE8;J3KRK0;J3QLK5 Q86UE8 444 461 TLK2 Serine/threonine-protein kinase tousled-like 2 yes no 4 0.064378 8.6005 By MS/MS By matching 1 2 1.1058 1.0564 29.555 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56137 0.63852 NaN 1 0 Median 1.1089 1.0651 1.1701 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4013300 2041700 1971600 0 0 0 0 0 0 2025600 1104400 921170 1987700 937260 1050500 0 0 0 0 0 0 14843 3277 15451 76047;76048;76049 77274 77274 1 IHNFGLIQEK KAVDHATNRTQFGEKIHNFGLIQEKLARMV QFGEKIHNFGLIQEKLARMVMLQYVTESMA K I H E K L 0 0 1 0 0 1 1 1 1 2 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1197.6506 P49748;J3KSR4 P49748 373 382 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 0.0001048 79.489 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1771 1.0408 10.984 3 Median 1.0958 1.0304 NaN 1 0 Median 1.2417 1.0408 NaN 1 0 Median 1.1771 1.2524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24888000 9604000 15284000 10999000 3804400 7194800 10064000 4402600 5661300 3085000 1397000 1688000 739640 0 739640 0 0 0 0 0 0 14844 2394 15452 76050;76051;76052;76053 77275;77276;77277;77278 77276 4 IHNGESMSYLFR KTVDISMILSEAIRRIHNGESMSYLFRNIG IRRIHNGESMSYLFRNIGLDD_________ R I H F R N 0 1 1 0 0 0 1 1 1 1 1 0 1 1 0 2 0 0 1 0 0 0 12 0 1452.682 O60256;I3L0S1 O60256 352 363 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 3 0.00027385 58.172 By MS/MS By matching 1 2 1.3033 1.2389 1.8625 3 Plateau 1.2478 1.2389 NaN 1 0 Median 1.3211 1.2135 2.0192 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8073500 3861600 4211800 7270000 3546800 3723100 803500 314790 488720 0 0 0 0 0 0 0 0 0 0 0 0 14845 1607 15453 76054;76055;76056 77279 77279 1 IHNHLPEIQK LIFPLIVTGQREAARIHNHLPEIQKFSSRI REAARIHNHLPEIQKFSSRIREAKLAGDHI R I H Q K F 0 0 1 0 0 1 1 0 2 2 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1227.6724 A0A087X0L7;J3KNA0;Q15070;C9JC63;E7EVY0 A0A087X0L7 169 178 OXA1L Mitochondrial inner membrane protein OXA1L yes no 3 0.0014935 50.297 By MS/MS By MS/MS 1 1 1.0332 0.9488 21.242 2 Median 0.83498 0.81648 NaN 1 0 Median 1.2785 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076300 1490400 1585800 1094800 521730 573020 1981500 968690 1012800 0 0 0 0 0 0 0 0 0 0 0 0 14846 105 15454 76057;76058 77280;77281;77282 77281 3 IHNIDIPTTQQVPHIEALLK EEARLKEAQLRNELKIHNIDIPTTQQVPHI IPTTQQVPHIEALLKRKLSEQEELKKKPRR K I H L K R 1 0 1 1 0 2 1 0 2 4 2 1 0 0 2 0 2 0 0 1 0 0 20 0 2279.2638 A6NHR9;J3KTL8 A6NHR9 1674 1693 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3;4 5.9617E-06 46.027 By MS/MS By matching 2 1 0.76699 0.76266 8.2131 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71204 0.78912 11.276 2 0 Median 0.84823 0.76266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21007000 12482000 8524800 0 0 0 0 0 0 20694000 12320000 8374500 312800 162440 150360 0 0 0 0 0 0 14847 518 15455 76059;76060;76061 77283;77284;77285;77286;77287 77285 5 IHNVGSPLK ELLKKLPDLERLLSKIHNVGSPLKSQNHPD ERLLSKIHNVGSPLKSQNHPDSRAIMYEET K I H L K S 0 0 1 0 0 0 0 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 963.55016 P52701;A0A494C0M1;A0A087WWJ1 P52701 825 833 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00079248 97.635 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 2 1.0923 0.95757 12.7 10 Median 0.87327 0.82186 NaN 1 0 Median 1.1194 0.96047 4.0041 2 0 Median 0.84566 0.95895 33.576 2 0 Median 1.0852 1.0187 5.6136 3 0 Plateau NaN NaN NaN 0 0 Median 1.1235 0.95757 1.2398 2 0 Median 15301000 7300700 8000700 1343400 700790 642600 6844200 3076700 3767500 4288100 2223800 2064400 2030800 926740 1104000 0 0 0 794920 372630 422290 14848 2453 15456 76062;76063;76064;76065;76066;76067;76068;76069;76070;76071 77288;77289;77290;77291;77292 77291 5 IHPEGPPLK VRRLGMIVAEVVSARIHPEGPPLKFQYEED EVVSARIHPEGPPLKFQYEEDELSLELLAL R I H L K F 0 0 0 0 0 0 1 1 1 1 1 1 0 0 3 0 0 0 0 0 0 0 9 0 986.55492 Q9Y4R8 Q9Y4R8 417 425 TELO2 Telomere length regulation protein TEL2 homolog yes yes 2 0.029888 36.395 By MS/MS 1 0.84579 0.75279 NaN 1 Median NaN NaN NaN 0 0 Median 0.84579 0.75279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1396200 746980 649230 0 0 0 1396200 746980 649230 0 0 0 0 0 0 0 0 0 0 0 0 14849 4447 15457 76072 77293 77293 1 IHPELLAK LLKGVTIASGGVLPRIHPELLAKKRGTKGK SGGVLPRIHPELLAKKRGTKGKSETILSPP R I H A K K 1 0 0 0 0 0 1 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 919.5491 Q9P0M6 Q9P0M6 109 116 H2AFY2 Core histone macro-H2A.2 yes yes 2 0.006071 72.789 By MS/MS By MS/MS 3 3 1.0314 0.94074 24.698 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79184 0.75607 7.0168 3 0 Median 1.3842 1.1311 8.8882 3 0 Median 108940000 59728000 49208000 0 0 0 0 0 0 0 0 0 0 0 0 80216000 46063000 34153000 28720000 13665000 15055000 14850 4206 15458 76073;76074;76075;76076;76077;76078 77294;77295;77296;77297;77298;77299;77300;77301 77297 8 IHPLEKVDEEATEK FEVGKEKMLKVKIVKIHPLEKVDEEATEKK KIHPLEKVDEEATEKKSDGACDSPSSDKEN K I H E K K 1 0 0 1 0 0 4 0 1 1 1 2 0 0 1 0 1 0 0 1 0 0 14 1 1636.8308 Q9UIG0 Q9UIG0 137 150 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.00058562 46.408 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.81781 0.88399 22.98 6 Median NaN NaN NaN 0 0 Median 0.65942 0.61556 NaN 1 0 Median 0.81052 0.93438 NaN 1 0 Median 0.93284 0.88603 NaN 1 0 Median 0.65429 0.71672 36.032 2 0 Median 0.97781 0.88195 NaN 1 0 Median 18433000 10423000 8009900 0 0 0 434590 200150 234440 3987800 2331900 1655800 3051700 1815700 1236000 8486600 4858500 3628100 2472500 1217000 1255500 14851 4290 15459 76079;76080;76081;76082;76083;76084 77302;77303;77304;77305 77305 4 IHPLETEQAGLESNLKK AWVKANIQYSHVLERIHPLETEQAGLESNL PLETEQAGLESNLKKTEDRKRKLEELLNSV R I H K K T 1 0 1 0 0 1 3 1 1 1 3 2 0 0 1 1 1 0 0 0 0 0 17 1 1906.016 Q8NCM8 Q8NCM8 3106 3122 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 5.2673E-06 67.605 By MS/MS 1 0.61609 0.67118 NaN 1 Median 0.61609 0.67118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11639000 7500900 4138100 11639000 7500900 4138100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14852 3418 15460 76085 77306;77307 77306 2 IHPMAYQLQLQAASNFK KRPANQFVPRLYGFKIHPMAYQLQLQAASN PMAYQLQLQAASNFKSPVKTIR________ K I H F K S 3 0 1 0 0 3 0 0 1 1 2 1 1 1 1 1 0 0 1 0 0 0 17 0 1959.0037 Q5SRQ6;P67870 Q5SRQ6 211 227 CSNK2B Casein kinase II subunit beta yes no 3 5.7808E-14 114.31 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 2 1.0144 0.93723 11.335 6 Median 1.0144 0.93723 7.4387 2 0 Median 1.1837 0.99578 NaN 1 0 Median 0.87599 0.82581 NaN 1 0 Median 1.3875 1.1222 NaN 1 0 Median 0.84852 0.86341 NaN 1 0 Median NaN NaN NaN 0 0 Median 122520000 59136000 63381000 104510000 49768000 54744000 4421800 1905900 2516000 5667400 3139800 2527600 167240 67260 99982 7747900 4254900 3493000 0 0 0 14853 2628 15461;15462 76086;76087;76088;76089;76090;76091;76092 77308;77309;77310;77311;77312;77313;77314;77315 77308 1295 8 IHPQTIIAGWR AAELLREAESLIAKKIHPQTIIAGWREATK IAKKIHPQTIIAGWREATKAAREALLSSAV K I H W R E 1 1 0 0 0 1 0 1 1 3 0 0 0 0 1 0 1 1 0 0 0 0 11 0 1290.7197 P78371;F5GWF6;F8VQ14 P78371 121 131 CCT2 T-complex protein 1 subunit beta yes no 2;3 5.0187E-05 77.192 By MS/MS By matching By MS/MS By MS/MS 5 2 2 1 1.0419 1.0007 88.081 10 Median 0.99552 0.96622 89.488 5 1 Median 1.2337 1.0589 23.755 2 0 Median 2.3699 2.3899 119.89 2 1 Median 1.1605 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112840000 47829000 65011000 63612000 34939000 28673000 6847700 2990500 3857200 41643000 9579400 32064000 737670 320230 417430 0 0 0 0 0 0 14854 2644 15463 76093;76094;76095;76096;76097;76098;76099;76100;76101;76102 77316;77317;77318;77319;77320;77321;77322;77323 77318 8 IHPTSVISGYR AAELLKNADELVKQKIHPTSVISGYRLACK VKQKIHPTSVISGYRLACKEAVRYINENLI K I H Y R L 0 1 0 0 0 0 0 1 1 2 0 0 0 0 1 2 1 0 1 1 0 0 11 0 1228.6564 P17987;E7ERF2;F5H136;F5H676 P17987 112 122 TCP1 T-complex protein 1 subunit alpha yes no 2;3 5.257E-05 101.65 By MS/MS By MS/MS By MS/MS By MS/MS 5 8 2 4 1.1089 0.9844 16.822 19 Median 1.0227 0.9844 16.439 5 1 Median 1.1261 0.93348 15.802 8 1 Median 1.0365 1.0636 9.7539 2 0 Median 1.2338 1.0467 22.724 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 238140000 112980000 125160000 102770000 49447000 53328000 103150000 48079000 55075000 11848000 5810100 6037700 20365000 9643000 10722000 0 0 0 0 0 0 14855 2051 15464 76103;76104;76105;76106;76107;76108;76109;76110;76111;76112;76113;76114;76115;76116;76117;76118;76119;76120;76121 77324;77325;77326;77327;77328;77329;77330;77331;77332;77333;77334;77335;77336;77337;77338;77339;77340;77341;77342;77343;77344;77345;77346 77328 22 IHPVSTMVK SVADLIESMLKNLSRIHPVSTMVKGMYGIE LKNLSRIHPVSTMVKGMYGIENEVFLSLPC R I H V K G 0 0 0 0 0 0 0 0 1 1 0 1 1 0 1 1 1 0 0 2 0 0 9 0 1010.5583 P07195;A0A3B3IS95 P07195 271 279 LDHB L-lactate dehydrogenase B chain yes no 2 0.0028118 69.423 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 5 2 2 2 1 1.0251 0.91384 12.79 20 Median 1.0231 0.95585 9.7718 8 0 Median 1.0685 0.89829 3.8214 5 0 Median 1.0104 0.97422 2.3992 2 0 Median 1.0464 0.8828 6.1788 2 0 Median 0.69507 0.7122 29.27 2 0 Median 1.0237 0.86006 NaN 1 0 Median 712410000 348280000 364130000 396880000 193450000 203430000 285440000 140050000 145390000 12892000 6334500 6557100 12293000 5745100 6547500 3932300 2213400 1718800 969710 486550 483160 14856 1880 15465;15466 76122;76123;76124;76125;76126;76127;76128;76129;76130;76131;76132;76133;76134;76135;76136;76137;76138;76139;76140;76141 77347;77348;77349;77350;77351;77352;77353;77354;77355;77356;77357;77358;77359;77360 77356 646 14 IHQESELHSYLSR RIAKKKRWNSIEERRIHQESELHSYLSRLI RRIHQESELHSYLSRLIAAERERELEECQR R I H S R L 0 1 0 0 0 1 2 0 2 1 2 0 0 0 0 3 0 0 1 0 0 0 13 0 1597.7849 Q9UNE7;H3BTA3;H3BS86;H3BUD0 Q9UNE7 155 167 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2;3;4 1.5498E-07 121.76 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 1.1188 0.98791 19.719 11 Median 1.0577 0.99 5.2409 3 1 Median 1.1417 0.94935 15.083 3 1 Median 1.1631 1.1426 23.481 2 0 Median 1.1841 0.98791 32.993 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103470000 47435000 56031000 30659000 14729000 15930000 35626000 16162000 19464000 17966000 8213200 9753000 19215000 8331300 10884000 0 0 0 0 0 0 14857 4342 15467 76142;76143;76144;76145;76146;76147;76148;76149;76150;76151;76152;76153 77361;77362;77363;77364;77365;77366;77367;77368;77369;77370;77371;77372;77373;77374;77375;77376;77377;77378;77379 77370 19 IHQHILPQGQGMLSGIGR SGSQLIRLIPESSGKIHQHILPQGQGMLSG HILPQGQGMLSGIGRKVSSLFGILSPSSDL K I H G R K 0 1 0 0 0 3 0 4 2 3 2 0 1 0 1 1 0 0 0 0 0 0 18 0 1941.0367 Q8WUM0 Q8WUM0 240 257 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3;4 4.4528E-15 111.92 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 5 1 1 0.95335 0.98725 52.203 16 Median 0.89544 0.88424 15.596 2 0 Median 0.93442 0.82704 NaN 1 0 Median 0.93186 1.0241 6.9248 6 0 Median 1.1116 0.94592 88.142 5 1 Median 0.95343 0.99042 NaN 1 0 Median 0.59853 0.49209 NaN 1 0 Median 218260000 113330000 104940000 4983000 2719000 2264000 573910 277340 296570 178190000 93389000 84804000 28154000 14006000 14148000 5848900 2685300 3163600 511550 251950 259600 14858 3492 15468;15469 76154;76155;76156;76157;76158;76159;76160;76161;76162;76163;76164;76165;76166;76167;76168;76169 77380;77381;77382;77383;77384;77385;77386;77387;77388;77389;77390;77391;77392;77393;77394;77395;77396;77397 77381 1745 18 IHQHILPQGQGMLSGIGRK SGSQLIRLIPESSGKIHQHILPQGQGMLSG ILPQGQGMLSGIGRKVSSLFGILSPSSDLT K I H R K V 0 1 0 0 0 3 0 4 2 3 2 1 1 0 1 1 0 0 0 0 0 0 19 1 2069.1316 Q8WUM0 Q8WUM0 240 258 NUP133 Nuclear pore complex protein Nup133 yes yes 4 2.6983E-08 63.337 By MS/MS 1 1.0253 1.1619 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0253 1.1619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8869000 4366400 4502600 0 0 0 0 0 0 8869000 4366400 4502600 0 0 0 0 0 0 0 0 0 14859 3492 15470 76170 77398;77399 77398 2 IHQIELIPNDQLVAVISGR HVTKDEIIRVGDNKKIHQIELIPNDQLVAV ELIPNDQLVAVISGRNRHVRLFPMSALDGR K I H G R N 1 1 1 1 0 2 1 1 1 4 2 0 0 0 1 1 0 0 0 2 0 0 19 0 2114.1848 A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25;H0Y6R0;H0Y6V3;H0Y7V8 A0A0A0MRJ1 554 572 CDC42BPA Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase MRCK alpha yes no 3 0.059822 8.0864 By MS/MS 1 0.82492 0.69587 NaN 1 Median NaN NaN NaN 0 0 Median 0.82492 0.69587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995340 537080 458260 0 0 0 995340 537080 458260 0 0 0 0 0 0 0 0 0 0 0 0 14860 162 15471 76171 77400 77400 1 IHQIEYAMEAVK NQYDNDVTVWSPQGRIHQIEYAMEAVKQGS QGRIHQIEYAMEAVKQGSATVGLKSKTHAV R I H V K Q 2 0 0 0 0 1 2 0 1 2 0 1 1 0 0 0 0 0 1 1 0 0 12 0 1430.7228 P25786;B4DEV8 P25786 19 30 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2;3 4.5289E-05 156.58 By MS/MS By MS/MS By MS/MS By matching 5 5 3 1 1.1351 1.0144 15.872 14 Median 1.135 1.0248 18.173 5 1 Median 1.2352 1.0372 2.8703 5 0 Median 0.88231 0.82701 8.9433 3 0 Median 0.86862 0.73806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 402950000 182770000 220180000 312180000 141540000 170640000 66012000 29405000 36608000 23559000 11195000 12364000 1200900 630780 570150 0 0 0 0 0 0 14861 2136 15472;15473 76172;76173;76174;76175;76176;76177;76178;76179;76180;76181;76182;76183;76184;76185 77401;77402;77403;77404;77405;77406;77407;77408;77409;77410;77411;77412;77413;77414 77402 895 14 IHSDCAANQQVTYR CREGEDNSKRNPIAKIHSDCAANQQVTYRI KIHSDCAANQQVTYRISGVGIDQPPYGIFV K I H Y R I 2 1 1 1 1 2 0 0 1 1 0 0 0 0 0 1 1 0 1 1 0 0 14 0 1661.758 Q02413 Q02413 73 86 DSG1 Desmoglein-1 yes yes 3 0.047633 31.389 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14862 2698 15474 76186 77415 77415 1 IHSEVVEDTEAVSAVQQLLDDER KTVAARALECMQVCKIHSEVVEDTEAVSAV TEAVSAVQQLLDDERMLVEPACGAALAAIY K I H E R M 2 1 0 3 0 2 4 0 1 1 2 0 0 0 0 2 1 0 0 4 0 0 23 0 2581.2508 Q96GA7;H0YID3 Q96GA7 247 269 SDSL Serine dehydratase-like yes no 3 1.2078E-11 53.342 By MS/MS 1 1.7207 1.4724 NaN 1 Median NaN NaN NaN 0 0 Median 1.7207 1.4724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 619400 234660 384740 0 0 0 619400 234660 384740 0 0 0 0 0 0 0 0 0 0 0 0 14863 3654 15475 76187 77416 77416 1 IHSLTHLDSVTK LPKILCQEEQDAYRRIHSLTHLDSVTKIHN YRRIHSLTHLDSVTKIHNGSEVFTKNLCSQ R I H T K I 0 0 0 1 0 0 0 0 2 1 2 1 0 0 0 2 2 0 0 1 0 0 12 0 1349.7303 A0A087WZR3;H9KVA9;A0A0D9SF50;P46736 A0A087WZR3 226 237 BRCC3 Lys-63-specific deubiquitinase BRCC36 yes no 3 0.00015881 73.881 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1832 1.049 4.1751 4 Median 1.1409 1.0627 NaN 1 0 Median 1.3392 1.1229 NaN 1 0 Median 1.0684 1.0218 NaN 1 0 Median 1.2272 1.0355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18712000 8517800 10194000 8649400 4085800 4563500 4585000 1812500 2772500 3262500 1546100 1716300 2215100 1073400 1141700 0 0 0 0 0 0 14864 97 15476 76188;76189;76190;76191 77417;77418;77419;77420;77421;77422 77421 6 IHTDFEK WTIRKGTKAPQAAGKIHTDFEKGFIMAEVM KAPQAAGKIHTDFEKGFIMAEVMKYEDFKE K I H E K G 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 7 0 888.43413 J3KQ32;Q9NTK5 J3KQ32 354 360 OLA1 Obg-like ATPase 1 yes no 2 0.026776 52.683 By matching By MS/MS By matching 1 1 2 1.1473 1.1341 5.762 4 Median 1.2038 1.1767 NaN 1 0 Median 1.2767 1.093 NaN 1 0 Median 1.0487 1.1162 8.3616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6250500 2828600 3421900 386430 176810 209620 4978600 2205900 2772600 885500 445880 439620 0 0 0 0 0 0 0 0 0 14865 1315 15477 76192;76193;76194;76195 77423 77423 1 IHTEPQLSAALEYVR TRRLSFLVSYIASKKIHTEPQLSAALEYVR IHTEPQLSAALEYVRSHPLDPIDTVDFERE K I H V R S 2 1 0 0 0 1 2 0 1 1 2 0 0 0 1 1 1 0 1 1 0 0 15 0 1725.905 P47897;A0A1B0GVU9;A0A0U1RQT0;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2 P47897 81 95 QARS Glutamine--tRNA ligase yes no 3 9.5934E-05 57.328 By MS/MS By matching 1 1 0.7948 0.70568 0.63001 2 Median 0.7397 0.70254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85401 0.70883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6923600 3785300 3138300 6752600 3716600 3036000 0 0 0 0 0 0 170990 68701 102290 0 0 0 0 0 0 14866 2356 15478 76196;76197 77424;77425 77424 2 IHTLELK RAEQQDSGRLYLENKIHTLELKLEESHNRF GRLYLENKIHTLELKLEESHNRFSATEVTN K I H L K L 0 0 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 7 0 852.5069 Q8N163;H0YB24;G3V119 Q8N163 833 839 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.0028195 110.63 By MS/MS 1 1.2295 1.0426 NaN 1 Median NaN NaN NaN 0 0 Median 1.2295 1.0426 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7847600 3414700 4432800 0 0 0 7847600 3414700 4432800 0 0 0 0 0 0 0 0 0 0 0 0 14867 3354 15479 76198 77426 77426 1 IHTLELKLEESHNR RAEQQDSGRLYLENKIHTLELKLEESHNRF KIHTLELKLEESHNRFSATEVTNKTLAAEM K I H N R F 0 1 1 0 0 0 3 0 2 1 3 1 0 0 0 1 1 0 0 0 0 0 14 1 1717.9111 Q8N163;H0YB24;G3V119 Q8N163 833 846 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 4 0.0001259 70.622 By MS/MS By MS/MS 1 1 0.82425 0.89435 46.386 2 Median 1.1946 1.2415 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.56871 0.64425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9382000 4844400 4537600 3009100 1330500 1678600 0 0 0 6372900 3513900 2859000 0 0 0 0 0 0 0 0 0 14868 3354 15480 76199;76200 77427;77428 77428 2 IHVDFSQSVAK KAFFKMDNVLIDDRRIHVDFSQSVAKVKWK DDRRIHVDFSQSVAKVKWKGKGGKYTKSDF R I H A K V 1 0 0 1 0 1 0 0 1 1 0 1 0 1 0 2 0 0 0 2 0 0 11 0 1229.6404 Q8WUA2 Q8WUA2 311 321 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 2;3 0.0020633 71.614 By MS/MS By MS/MS By MS/MS 2 2 1 1.0495 0.96345 31.653 4 Median 0.96794 0.91221 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2912 1.3046 43.777 2 0 Median 1.138 0.96967 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19066000 9437400 9629100 10079000 5115400 4963400 0 0 0 6263000 3099400 3163600 2724700 1222600 1502100 0 0 0 0 0 0 14869 3486 15481 76201;76202;76203;76204;76205 77429;77430;77431;77432;77433;77434 77432 6 IHVELSEK QLQSRLSASETSLHRIHVELSEKGEATQKL SETSLHRIHVELSEKGEATQKLKEELSEVE R I H E K G 0 0 0 0 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 953.5182 Q15075 Q15075 363 370 EEA1 Early endosome antigen 1 yes yes 2 0.019721 67.169 By MS/MS 1 1.9316 1.6982 NaN 1 Median NaN NaN NaN 0 0 Median 1.9316 1.6982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1569900 548430 1021500 0 0 0 1569900 548430 1021500 0 0 0 0 0 0 0 0 0 0 0 0 14870 2926 15482 76206 77435 77435 1 IHVELSEKGEATQK QLQSRLSASETSLHRIHVELSEKGEATQKL RIHVELSEKGEATQKLKEELSEVETKYQHL R I H Q K L 1 0 0 0 0 1 3 1 1 1 1 2 0 0 0 1 1 0 0 1 0 0 14 1 1567.8206 Q15075 Q15075 363 376 EEA1 Early endosome antigen 1 yes yes 2;3 2.2528E-05 94.616 By MS/MS By MS/MS By matching 2 1 1 0.98563 0.93294 11.387 4 Median 0.94082 0.92577 2.7597 2 0 Median 1.2006 1.1583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0258 0.922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22009000 11164000 10845000 17320000 8975800 8344100 4218600 1934500 2284000 0 0 0 470260 253240 217020 0 0 0 0 0 0 14871 2926 15483 76207;76208;76209;76210 77436;77437;77438;77439;77440 77438 5 IHVFYIDYGNR EWYRARVEKVESPAKIHVFYIDYGNREVLP SPAKIHVFYIDYGNREVLPSTRLGTLSPAF K I H N R E 0 1 1 1 0 0 0 1 1 2 0 0 0 1 0 0 0 0 2 1 0 0 11 0 1395.6935 Q7KZF4 Q7KZF4 759 769 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 7.9594E-05 81.594 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 3 1 1.1063 1.064 15.172 8 Median 1.1063 1.0652 0.82206 2 1 Median 1.1695 1.0314 5.0544 2 0 Median 1.4169 1.5127 NaN 1 0 Median 1.1731 0.99903 13.127 2 1 Median 0.91892 0.97134 NaN 1 0 Median NaN NaN NaN 0 0 Median 46198000 21079000 25119000 33958000 15911000 18047000 2861200 1308500 1552600 4939400 1933900 3005400 3927600 1702500 2225100 511730 223420 288300 0 0 0 14872 3214 15484 76211;76212;76213;76214;76215;76216;76217;76218;76219 77441;77442;77443;77444;77445 77443 5 IHVFYIDYGNREVLPSTR EWYRARVEKVESPAKIHVFYIDYGNREVLP FYIDYGNREVLPSTRLGTLSPAFSTRVLPA K I H T R L 0 2 1 1 0 0 1 1 1 2 1 0 0 1 1 1 1 0 2 2 0 0 18 1 2178.1222 Q7KZF4 Q7KZF4 759 776 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.023897 26.474 By MS/MS 1 1.1788 1.3097 NaN 1 Median 1.1788 1.3097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3774600 1602800 2171700 3774600 1602800 2171700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14873 3214 15485 76220 77446 77446 1 IHVIDHSGAR EDALLGSYPVDDGCRIHVIDHSGARLGEYE DDGCRIHVIDHSGARLGEYEDVSRVEKYTI R I H A R L 1 1 0 1 0 0 0 1 2 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1103.5836 K7EK42;A0A494C0X0;Q99426;K7EP07 K7EK42 85 94 TBCB Tubulin-folding cofactor B yes no 2 0.013464 40.002 By MS/MS By MS/MS 1 1 1.0913 0.9981 4.7773 2 Median 1.0639 1.0324 NaN 1 0 Median 1.1195 0.96494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1622000 772390 849620 1235300 598630 636640 386740 173760 212980 0 0 0 0 0 0 0 0 0 0 0 0 14874 462 15486 76221;76222 77447;77448 77447 2 IHVILAQK EEQRVHSPPASLVPRIHVILAQKLQHINPL PASLVPRIHVILAQKLQHINPLLPACLNKE R I H Q K L 1 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 920.58074 Q9BTE3 Q9BTE3 307 314 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.0024257 119.22 By MS/MS By MS/MS By matching 1 3 1 1.1986 1.008 10.924 5 Median 0.99997 0.95333 NaN 1 0 Median 1.1986 1.008 14.384 3 0 Median NaN NaN NaN 0 0 Median 1.2289 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15074000 7093800 7980200 6262200 3180600 3081600 8477700 3761500 4716200 0 0 0 334190 151730 182460 0 0 0 0 0 0 14875 3825 15487 76223;76224;76225;76226;76227 77449;77450;77451 77451 3 IHVLEAQDLIAK HTTPDSQFGTEHVLRIHVLEAQDLIAKDRF VLRIHVLEAQDLIAKDRFLGGLVKGKSDPY R I H A K D 2 0 0 1 0 1 1 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1348.7715 Q9BSJ8 Q9BSJ8 651 662 ESYT1 Extended synaptotagmin-1 yes yes 2;3 5.2871E-06 130.98 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.0524 1.0089 4.1834 8 Median 1.0218 0.99138 1.6863 3 0 Median 1.2063 1.0221 3.9995 3 0 Plateau 0.98976 1.0547 NaN 1 0 Median 1.2517 1.0791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42279000 19867000 22411000 25149000 12529000 12620000 16049000 6822100 9226600 845970 429180 416790 234960 87496 147470 0 0 0 0 0 0 14876 3816 15488 76228;76229;76230;76231;76232;76233;76234;76235 77452;77453;77454;77455;77456;77457 77453 6 IHVSDQELQSANASVDDSR QSVQVPEFTPKSGVKIHVSDQELQSANASV DQELQSANASVDDSRLEELKATLPSPDKLP K I H S R L 2 1 1 3 0 2 1 0 1 1 1 0 0 0 0 4 0 0 0 2 0 0 19 0 2069.9614 P22314;Q5JRR6 P22314 807 825 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 1.1175E-25 128.1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0576 0.94768 16.968 4 Median 0.88972 0.85698 NaN 1 1 Median 1.2572 1.048 NaN 1 0 Median 0.72814 0.77587 NaN 1 1 Median 1.3143 1.1151 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40770000 19251000 21519000 13227000 7200100 6027100 14613000 6359200 8253900 6188800 3034600 3154300 6740400 2656900 4083500 0 0 0 0 0 0 14877 2100 15489 76236;76237;76238;76239 77458;77459;77460;77461;77462 77458 5 IHVSDQELQSANASVDDSRLEELK QSVQVPEFTPKSGVKIHVSDQELQSANASV SANASVDDSRLEELKATLPSPDKLPGFKMY K I H L K A 2 1 1 3 0 2 3 0 1 1 3 1 0 0 0 4 0 0 0 2 0 0 24 1 2682.3097 P22314;Q5JRR6 P22314 807 830 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3;4 4.552E-36 151.42 By MS/MS By matching By MS/MS 3 2 4 0.96513 1.0433 30.196 9 Median 0.96513 1.0092 7.6373 3 0 Median 0.77158 0.71047 64.533 2 0 Median 0.96908 1.0989 9.0958 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 294000000 138020000 155980000 240240000 112390000 127850000 9877200 4340400 5536800 43881000 21289000 22591000 0 0 0 0 0 0 0 0 0 14878 2100 15490 76240;76241;76242;76243;76244;76245;76246;76247;76248 77463;77464;77465;77466;77467;77468;77469;77470;77471;77472 77464 10 IHVSYQETQQMQMK RIGTLEKEHNVFQNKIHVSYQETQQMQMKF KIHVSYQETQQMQMKFQQVREQMEAEIAHL K I H M K F 0 0 0 0 0 4 1 0 1 1 0 1 2 0 0 1 1 0 1 1 0 0 14 0 1749.8178 Q86UP2 Q86UP2 394 407 KTN1 Kinectin yes yes 3 1.1099E-08 110.8 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.4274 1.2868 14.296 5 Median 1.4425 1.3911 NaN 1 0 Median 1.2223 1.0847 NaN 1 0 Median 0.96186 1.0301 NaN 1 1 Median 1.5147 1.3436 6.1063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40535000 16751000 23784000 16006000 6540100 9465700 2668300 1258600 1409700 8097900 3739800 4358100 13763000 5212400 8550600 0 0 0 0 0 0 14879 3280 15491 76249;76250;76251;76252;76253 77473;77474;77475;77476;77477;77478;77479;77480 77479 8 IHVTPLIPGK RIMDPEIALKILHRKIHVTPLIPGKSQSVS ILHRKIHVTPLIPGKSQSVSVSGPGPGPGP K I H G K S 0 0 0 0 0 0 0 1 1 2 1 1 0 0 2 0 1 0 0 1 0 0 10 0 1073.6597 Q9H0L4 Q9H0L4 195 204 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 0.00072484 71.877 By MS/MS By MS/MS 1 1 0.69788 0.65732 6.5243 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66724 0.68836 NaN 1 0 Median 0.72993 0.62769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8361200 5010500 3350600 0 0 0 0 0 0 7471000 4502100 2969000 890120 508480 381640 0 0 0 0 0 0 14880 3927 15492 76254;76255 77481;77482 77481 2 IHVWNGESGIK TPDSQFIMIGSEDGKIHVWNGESGIKVAVL EDGKIHVWNGESGIKVAVLDGKHTGPITCL K I H I K V 0 0 1 0 0 0 1 2 1 2 0 1 0 0 0 1 0 1 0 1 0 0 11 0 1238.6408 Q6UXN9 Q6UXN9 263 273 WDR82 WD repeat-containing protein 82 yes yes 2 0.00059752 66.435 By MS/MS By matching 1 1 1.141 1.0264 5.4755 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0256 0.98741 NaN 1 0 Median 1.2695 1.0669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20716000 8859000 11857000 0 0 0 0 0 0 15162000 6450300 8711400 5554500 2408700 3145800 0 0 0 0 0 0 14881 3190 15493 76256;76257 77483 77483 1 IHVYGYSMAYGPAQHAISTEK CLGGGRISHQSQDKKIHVYGYSMAYGPAQH SMAYGPAQHAISTEKIKAKYPDYEVTWAND K I H E K I 3 0 0 0 0 1 1 2 2 2 0 1 1 0 1 2 1 0 3 1 0 0 21 0 2322.1103 Q9NRX4 Q9NRX4 88 108 PHPT1 14 kDa phosphohistidine phosphatase yes yes 2;3;4 4.4427E-29 164.02 By MS/MS By MS/MS By MS/MS 6 5 3 1.0156 0.9027 15.007 14 Median 0.87329 0.79124 14.32 6 0 Median 1.2204 1.0015 7.5394 5 0 Median 0.87936 0.84407 15.545 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 316120000 141960000 174170000 79511000 40216000 39294000 204390000 88904000 115490000 32224000 12837000 19387000 0 0 0 0 0 0 0 0 0 14882 4092 15494;15495 76258;76259;76260;76261;76262;76263;76264;76265;76266;76267;76268;76269;76270;76271 77484;77485;77486;77487;77488;77489;77490;77491;77492;77493;77494;77495;77496;77497;77498;77499;77500;77501;77502;77503;77504;77505;77506;77507;77508;77509;77510;77511 77499 1874 28 IHYIGQNEPELLVAHAYTR EQVQCPKAAQKYVERIHYIGQNEPELLVAH GQNEPELLVAHAYTRYMGDLSGGQVLKKVA R I H T R Y 2 1 1 0 0 1 2 1 2 2 2 0 0 0 1 0 1 0 2 1 0 0 19 0 2223.1437 P30519;I3L159;I3L1F5;A0A087WT44 P30519 138 156 HMOX2 Heme oxygenase 2 yes no 3;4 1.6716E-10 95.094 By MS/MS By matching 2 1 1.0703 0.89779 12.147 3 Median 0.94825 0.88726 17.151 2 0 Median 1.0749 0.89779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38176000 19262000 18914000 34386000 17335000 17052000 3789600 1927100 1862500 0 0 0 0 0 0 0 0 0 0 0 0 14883 2194 15496 76272;76273;76274 77512;77513;77514 77513 3 IHYLDTTTLIEPAPR DQEFDHLPALLEFYKIHYLDTTTLIEPAPR IHYLDTTTLIEPAPRYPSPPMGSVSAPNLP K I H P R Y 1 1 0 1 0 0 1 0 1 2 2 0 0 0 2 0 3 0 1 0 0 0 15 0 1738.9254 P46109 P46109 90 104 CRKL Crk-like protein yes yes 3 2.4602E-08 99.011 By MS/MS By MS/MS By matching 1 1 1 0.86241 0.85525 16.863 3 Median 0.85822 0.85525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86241 0.84173 NaN 1 1 Median 1.3456 1.1359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21101000 11840000 9261300 11057000 6157300 4899700 0 0 0 9819100 5574700 4244500 224800 107590 117210 0 0 0 0 0 0 14884 2341 15497 76275;76276;76277 77515;77516;77517 77517 3 IHYLDTTTLIEPVSR DQEFDSLPALLEFYKIHYLDTTTLIEPVSR IHYLDTTTLIEPVSRSRQGSGVILRQEEAE K I H S R S 0 1 0 1 0 0 1 0 1 2 2 0 0 0 1 1 3 0 1 1 0 0 15 0 1756.9359 P46108;I3L297 P46108 106 120 CRK Adapter molecule crk yes no 3 1.303E-10 113.35 By MS/MS 2 0.84851 0.80568 NaN 1 Median 0.84851 0.80568 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17087000 9677200 7409600 17087000 9677200 7409600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14885 2340 15498 76278;76279 77518;77519 77519 2 IHYPHVYDSQAEAMK SVPILSRQRDADVEKIHYPHVYDSQAEAMK IHYPHVYDSQAEAMKTSAFIAGAKMILPEG K I H M K T 2 0 0 1 0 1 1 0 2 1 0 1 1 0 1 1 0 0 2 1 0 0 15 0 1787.8301 Q8N3C0 Q8N3C0 400 414 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 3.9712E-05 77.746 By MS/MS By MS/MS 1 1 1.0361 0.97839 13.783 2 Median 0.88626 0.88754 NaN 1 0 Median 1.2112 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30034000 14387000 15647000 10761000 5392900 5368300 19273000 8994100 10279000 0 0 0 0 0 0 0 0 0 0 0 0 14886 3366 15499 76280;76281 77520;77521;77522;77523 77522 4 IIAATFLFK KKAASGEIKITPWFKIIAATFLFKWWDNLN ITPWFKIIAATFLFKWWDNLNHLNQFVDHE K I I F K W 2 0 0 0 0 0 0 0 0 2 1 1 0 2 0 0 1 0 0 0 0 0 9 0 1022.6165 Q13907 Q13907 199 207 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 yes yes 2 0.063058 27.525 By MS/MS By matching 1 1 1.0104 0.92947 7.3557 2 Median 0.94649 0.88236 NaN 1 0 Median 1.0785 0.97909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4722300 2516100 2206200 4356200 2330200 2026000 366160 185890 180270 0 0 0 0 0 0 0 0 0 0 0 0 14887 2846 15500 76282;76283 77524 77524 1 IIAATIENAQPILQIDNAR DYSPYFKTIEDLRNKIIAATIENAQPILQI TIENAQPILQIDNARLAADDFRTKYEHELA K I I A R L 4 1 2 1 0 2 1 0 0 5 1 0 0 0 1 0 1 0 0 0 0 0 19 0 2063.1375 CON__P08779;P08779 CON__P08779 178 196 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 1.863E-68 183.79 By MS/MS By MS/MS By MS/MS 7 5 7 0.067041 0.068738 57.96 8 Median 0.066969 0.065377 45.947 2 1 Median NaN NaN NaN 0 0 Median 0.042692 0.045821 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.073834 0.072245 65.435 5 5 Median NaN NaN NaN 0 0 Median 54739000 53130000 1608800 26298000 25442000 855940 0 0 0 15651000 15562000 88668 0 0 0 12790000 12126000 664180 0 0 0 + 14888 754 15501 76284;76285;76286;76287;76288;76289;76290;76291;76292;76293;76294;76295;76296;76297;76298;76299;76300;76301;76302 77525;77526;77527;77528;77529;77530;77531;77532;77533;77534;77535;77536;77537;77538;77539;77540;77541;77542;77543 77526 19 IIADIFEYTAK MVRNTYIFPPEPSMKIIADIFEYTAKHMPK PSMKIIADIFEYTAKHMPKFNSISISGYHM K I I A K H 2 0 0 1 0 0 1 0 0 3 0 1 0 1 0 0 1 0 1 0 0 0 11 0 1282.6809 P22033 P22033 241 251 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 0.0020633 55.567 By MS/MS By matching By matching By matching 1 1 1 1 1.2586 1.2197 24.851 4 Median 0.914 0.84601 NaN 1 0 Median 1.5344 1.3554 NaN 1 0 Median 1.0323 1.0976 NaN 1 0 Median 1.7187 1.4774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11863000 5088600 6774600 6493300 3153800 3339500 2276500 608370 1668200 2843800 1230200 1613500 249570 96186 153380 0 0 0 0 0 0 14889 2095 15502 76303;76304;76305;76306 77544;77545 77545 2 IIAEALTR VRSRVDSKTLTRNTRIIAEALTRVIYNLTE TLTRNTRIIAEALTRVIYNLTEKGTPPDMP R I I T R V 2 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 8 0 885.52837 Q969V3;K7EMW4;K7ELZ9;K7ENM2;A0A0C4DGP7 Q969V3 417 424 NCLN Nicalin yes no 2 0.0052175 77.058 By MS/MS By MS/MS 1 1 1.1605 1.0472 5.4446 2 Median 1.1243 1.0883 NaN 1 0 Median 1.1979 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19386000 8988800 10397000 7414900 3526400 3888500 11971000 5462400 6508900 0 0 0 0 0 0 0 0 0 0 0 0 14890 3589 15503 76307;76308 77546;77547;77548;77549 77549 4 IIAEGANGPTTPEADK EKQLTKSNAPRVKAKIIAEGANGPTTPEAD IAEGANGPTTPEADKIFLERNIMVIPDLYL K I I D K I 3 0 1 1 0 0 2 2 0 2 0 1 0 0 2 0 2 0 0 0 0 0 16 0 1582.7839 P00367;P49448 P00367 400 415 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 1.8355E-06 88.187 By MS/MS 1 1.0424 0.88805 NaN 1 Median NaN NaN NaN 0 0 Median 1.0424 0.88805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4305500 1960200 2345300 0 0 0 4305500 1960200 2345300 0 0 0 0 0 0 0 0 0 0 0 0 14891 1814 15504 76309 77550;77551 77550 2 IIAEGANGPTTPEADKIFLER EKQLTKSNAPRVKAKIIAEGANGPTTPEAD NGPTTPEADKIFLERNIMVIPDLYLNAGGV K I I E R N 3 1 1 1 0 0 3 2 0 3 1 1 0 1 2 0 2 0 0 0 0 0 21 1 2241.1641 P00367;P49448 P00367 400 420 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 3 4.089E-19 98.816 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.7452 0.83543 22.367 5 Median 0.66784 0.66875 3.0971 2 0 Median 1.0599 0.96839 NaN 1 0 Median 0.7452 0.83543 NaN 1 1 Median 1.1779 1.1053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35343000 19766000 15577000 22734000 13361000 9372400 2499400 1100800 1398600 9695100 5101800 4593300 415290 202220 213070 0 0 0 0 0 0 14892 1814 15505 76310;76311;76312;76313;76314 77552;77553;77554 77554 3 IIAFVGSPVEDNEK HLALKHRQGKNHKMRIIAFVGSPVEDNEKD RIIAFVGSPVEDNEKDLVKLAKRLKKEKVN R I I E K D 1 0 1 1 0 0 2 1 0 2 0 1 0 1 1 1 0 0 0 2 0 0 14 0 1516.7773 P55036;Q5VWC4;A6PVX3 P55036 109 122 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2 0.00035795 73.067 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1928 1.0465 35.499 4 Median 0.95863 0.90481 NaN 1 1 Median 1.1678 1.0079 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2184 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4353 1.9954 NaN 1 0 Median 8008200 3659400 4348800 5091200 2350800 2740400 1616100 724750 891340 0 0 0 1101800 508060 593770 0 0 0 199070 75764 123310 14893 2491 15506 76315;76316;76317;76318 77555;77556 77555 2 IIAFVGSPVEDNEKDLVK HLALKHRQGKNHKMRIIAFVGSPVEDNEKD FVGSPVEDNEKDLVKLAKRLKKEKVNVDII R I I V K L 1 0 1 2 0 0 2 1 0 2 1 2 0 1 1 1 0 0 0 3 0 0 18 1 1972.0517 P55036;Q5VWC4;A6PVX3 P55036 109 126 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 3 0.0010113 31.111 By matching By matching By MS/MS By matching 1 1 1 1 0.93417 0.93069 8.1731 4 Median 0.85759 0.8185 NaN 1 0 Median 1.0398 0.97846 NaN 1 0 Median 0.92314 0.96467 NaN 1 0 Median 0.94534 0.8979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28844000 15849000 12995000 13216000 7695500 5520100 2027300 908610 1118700 11138000 6237900 4900200 2462600 1006800 1455800 0 0 0 0 0 0 14894 2491 15507 76319;76320;76321;76322 77557;77558 77558 2 IIAGDKEVVIAQNDK AGGENGNIILYDPSKIIAGDKEVVIAQNDK IIAGDKEVVIAQNDKHTGPVRALDVNIFQT K I I D K H 2 0 1 2 0 1 1 1 0 3 0 2 0 0 0 0 0 0 0 2 0 0 15 1 1611.8832 D6REX3;O94979;D6RHZ5;H0Y9T9;D6RE64;D6RCQ9 D6REX3 106 120 SEC31A Protein transport protein Sec31A yes no 3 0.00011774 50.305 By MS/MS By matching 1 1 1.5386 1.4505 3.9511 2 Median NaN NaN NaN 0 0 Median 1.5988 1.4916 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4807 1.4105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5334000 1822200 3511700 0 0 0 3380500 975230 2405200 0 0 0 1953500 847000 1106500 0 0 0 0 0 0 14895 823 15508 76323;76324 77559 77559 1 IIAGDKEVVIAQNDKHTGPVR AGGENGNIILYDPSKIIAGDKEVVIAQNDK EVVIAQNDKHTGPVRALDVNIFQTNLVASG K I I V R A 2 1 1 2 0 1 1 2 1 3 0 2 0 0 1 0 1 0 0 3 0 0 21 2 2259.2335 D6REX3;O94979;D6RHZ5;H0Y9T9;D6RE64;D6RCQ9 D6REX3 106 126 SEC31A Protein transport protein Sec31A yes no 4 5.6965E-05 37.379 By MS/MS 2 0.66711 0.74643 27.377 2 Median 0.66711 0.74643 27.377 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9731200 5362200 4369000 9731200 5362200 4369000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14896 823 15509 76325;76326 77560;77561 77560 2 IIAHAQLLEQHR ELTRIDRWFLHRMKRIIAHAQLLEQHRGQP MKRIIAHAQLLEQHRGQPLPPDLLQQAKCL R I I H R G 2 1 0 0 0 2 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1427.7997 F8VPD4;P27708 F8VPD4 780 791 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2;3 3.3973E-11 174.24 By MS/MS By MS/MS By MS/MS By matching 5 3 1 2 1.1741 1.054 13.457 10 Median 1.1741 1.1703 6.2385 4 2 Median 1.0975 0.93212 11.776 3 1 Median NaN NaN NaN 0 0 Median 1.2985 1.1433 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1307 0.9322 14.867 2 0 Median 91308000 42480000 48828000 49906000 22916000 26990000 37115000 17720000 19395000 0 0 0 1160700 511320 649390 0 0 0 3126200 1332900 1793200 14897 1057 15510 76327;76328;76329;76330;76331;76332;76333;76334;76335;76336;76337 77562;77563;77564;77565;77566;77567;77568;77569;77570;77571;77572;77573;77574 77564 13 IIAINSELTQPK LFDRLRDENPDFREKIIAINSELTQPKLAL REKIIAINSELTQPKLALSEEDKEVIIDST K I I P K L 1 0 1 0 0 1 1 0 0 3 1 1 0 0 1 1 1 0 0 0 0 0 12 0 1325.7555 E9PNW8;Q8WVX9 E9PNW8 79 90 FAR1 Fatty acyl-CoA reductase 1 yes no 2 0.0002496 84.17 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.75196 0.70216 18.35 4 Median 0.59559 0.56134 NaN 1 0 Median 0.96477 0.82858 NaN 1 0 Median 0.63415 0.6288 NaN 1 0 Median 0.89166 0.78408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10986000 6308500 4677500 5445800 3328200 2117700 2123700 1044400 1079200 3108100 1767800 1340300 308290 168050 140250 0 0 0 0 0 0 14898 976 15511 76338;76339;76340;76341 77575;77576 77575 2 IIALDGDTK AYGQALAKLGHASDRIIALDGDTKNSTFSE GHASDRIIALDGDTKNSTFSEIFKKEHPDR R I I T K N 1 0 0 2 0 0 0 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 9 0 944.51786 P29401;A0A0B4J1R6 P29401 335 343 TKT Transketolase yes no 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1.0586 0.94595 60.163 10 Median 1.0587 0.97602 106.89 3 0 Plateau 1.1092 0.9168 5.7476 3 0 Median 0.93104 0.95152 7.3165 2 1 Median 1.1809 1.0096 1.4502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 327970000 159660000 168310000 113790000 56394000 57397000 157530000 75007000 82525000 50891000 25471000 25420000 5755800 2790300 2965500 0 0 0 0 0 0 14899 2173 15512 76342;76343;76344;76345;76346;76347;76348;76349;76350;76351;76352 77577;77578;77579;77580;77581;77582;77583;77584;77585;77586;77587;77588;77589;77590;77591 77577 15 IIANALSSEPACLAEIEEDK LAFRDQNILLGTTYRIIANALSSEPACLAE LSSEPACLAEIEEDKARRILELSGSSSEDS R I I D K A 4 0 1 1 1 0 4 0 0 3 2 1 0 0 1 2 0 0 0 0 0 0 20 0 2172.062 P78527 P78527 3336 3355 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.040713 20.381 By MS/MS 1 0.81938 0.90264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81938 0.90264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217200 647540 569700 0 0 0 0 0 0 1217200 647540 569700 0 0 0 0 0 0 0 0 0 14900 2647 15513 76353 77592 77592 1 IIANALSSEPACLAEIEEDKAR LAFRDQNILLGTTYRIIANALSSEPACLAE SEPACLAEIEEDKARRILELSGSSSEDSEK R I I A R R 5 1 1 1 1 0 4 0 0 3 2 1 0 0 1 2 0 0 0 0 0 0 22 1 2399.2002 P78527 P78527 3336 3357 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.4722E-12 73.758 By MS/MS 1 0.68165 0.78995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68165 0.78995 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8557400 5410000 3147300 0 0 0 0 0 0 8557400 5410000 3147300 0 0 0 0 0 0 0 0 0 14901 2647 15514 76354 77593 77593 1 IIAPANMERPVR IGILTTNKNTSRTHKIIAPANMERPVRYIR THKIIAPANMERPVRYIRKPIDYTVLDDVG K I I V R Y 2 2 1 0 0 0 1 0 0 2 0 0 1 0 2 0 0 0 0 1 0 0 12 1 1365.7551 B6VEX4;A0A0A0MRT6;Q8IZP0 B6VEX4 124 135 ABI1 Abl interactor 1 yes no 3 0.00020025 65.5 By MS/MS By MS/MS 1 2 0.76093 0.77803 32.395 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72036 0.77803 NaN 1 0 Median 1.0239 0.94806 42.876 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9604500 5223900 4380600 0 0 0 0 0 0 4688200 2533900 2154200 4916300 2690000 2226400 0 0 0 0 0 0 14902 171 15515 76355;76356;76357 77594;77595;77596 77595 3 IIAPPER QKEITALAPSTMKIKIIAPPERKYSVWIGG APSTMKIKIIAPPERKYSVWIGGSILASLS K I I E R K 1 1 0 0 0 0 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 794.46504 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76;Q562R1 P63261 329 335 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 2 0.018227 81.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 1 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 683540000 0 683540000 65590000 0 65590000 483010000 0 483010000 71314000 0 71314000 22911000 0 22911000 26185000 0 26185000 14536000 0 14536000 14903 2625;2630;2595;3035 15516 76358;76359;76360;76361;76362;76363;76364;76365;76366;76367;76368;76369;76370;76371;76372 77597;77598;77599;77600;77601;77602;77603;77604;77605;77606;77607;77608;77609;77610;77611;77612;77613;77614;77615 77604 19 IIAPPERK QKEITALAPSTMKIKIIAPPERKYSVWIGG PSTMKIKIIAPPERKYSVWIGGSILASLST K I I R K Y 1 1 0 0 0 0 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 8 1 922.56 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76;Q562R1 P63261 329 336 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 2 0.0049067 95.352 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 6 2 0.75454 0.74917 16.166 19 Median 0.77223 0.78184 10.566 4 0 Median 0.92331 0.88008 14.793 3 0 Plateau 0.61663 0.6261 17.872 3 0 Median 0.88363 0.76711 NaN 1 0 Median 0.64574 0.701 20.656 6 0 Median 0.92323 0.78252 4.2405 2 0 Median 155680000 83921000 71763000 28342000 15248000 13095000 86822000 45462000 41360000 15634000 9178800 6455500 7275200 3893300 3381900 15956000 9311400 6644900 1653100 827380 825760 14904 2625;2630;2595;3035 15517 76373;76374;76375;76376;76377;76378;76379;76380;76381;76382;76383;76384;76385;76386;76387;76388;76389;76390;76391 77616;77617;77618;77619;77620;77621;77622;77623;77624;77625;77626;77627;77628;77629;77630 77626 15 IIAQCLNK DRYLCRVEEMRQSLRIIAQCLNKMPPGEIK EMRQSLRIIAQCLNKMPPGEIKVDDAKVSP R I I N K M 1 0 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 958.52699 O75306 O75306 343 350 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2 0.055461 50.039 By MS/MS 1 1.9554 1.706 NaN 1 Median NaN NaN NaN 0 0 Median 1.9554 1.706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1194500 445440 749010 0 0 0 1194500 445440 749010 0 0 0 0 0 0 0 0 0 0 0 0 14905 1657 15518 76392 77631 77631 1 IIASSPEMNLPTVSALR LARGFTAAGILSAHKIIASSPEMNLPTVSA ASSPEMNLPTVSALRKMGVNLTRSNKETVK K I I L R K 2 1 1 0 0 0 1 0 0 2 2 0 1 0 2 3 1 0 0 1 0 0 17 0 1797.9659 Q96C36;A0A087WTV6;J3KR12 Q96C36 30 46 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 2 6.5652E-14 113.65 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.2108 1.0608 35.744 7 Median 1.1832 1.1428 86.31 2 0 Median NaN NaN NaN 0 0 Median 1.0634 1.0492 9.4311 2 0 Median 1.2401 1.0351 3.4776 2 0 Median NaN NaN NaN 0 0 Median 1.2281 1.0768 NaN 1 0 Median 54964000 29922000 25042000 40874000 23724000 17150000 0 0 0 7733800 3514400 4219300 5891900 2497700 3394200 0 0 0 464700 185720 278980 14906 3615 15519;15520 76393;76394;76395;76396;76397;76398;76399 77632;77633;77634;77635;77636;77637;77638;77639;77640;77641 77635 1791 10 IIASSPEMNLPTVSALRK LARGFTAAGILSAHKIIASSPEMNLPTVSA SSPEMNLPTVSALRKMGVNLTRSNKETVKH K I I R K M 2 1 1 0 0 0 1 0 0 2 2 1 1 0 2 3 1 0 0 1 0 0 18 1 1926.0608 Q96C36;A0A087WTV6;J3KR12 Q96C36 30 47 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 3 0.00056662 33.308 By MS/MS By matching 1 1 1.0083 0.98141 33.088 2 Median 0.77365 0.77667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3141 1.2401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11360000 6271800 5087700 11021000 6142100 4878800 0 0 0 0 0 0 338610 129690 208910 0 0 0 0 0 0 14907 3615 15521 76400;76401 77642;77643 77643 2 IIAVESGETR I I T R 1 1 0 0 0 0 2 1 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1073.5717 REV__Q93070 yes no 2 0.052592 27.254 By matching By MS/MS By matching By matching 1 2 1 1 1.0279 1.1139 31.332 5 Median 0.53365 0.5929 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0279 1.1139 0 2 0 Median 1.126 0.97673 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5824 1.3625 NaN 1 0 Median 15639000 7408500 8230300 1436900 851550 585340 0 0 0 9790400 4868600 4921800 564730 255220 309510 0 0 0 3846800 1433100 2413700 + 14908 4527 15522 76402;76403;76404;76405;76406 77644 77644 1 IIDDGDSNLSVVK ECRNYLTKTRDYLIKIIDDGDSNLSVVKKL IKIIDDGDSNLSVVKKLPVPLESVKQMLNS K I I V K K 0 0 1 3 0 0 0 1 0 2 1 1 0 0 0 2 0 0 0 2 0 0 13 0 1373.7038 Q99666;J3KQ37;O14715;F8W705 Q99666 721 733 RGPD5;RGPD8 RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 2 0.0010188 72.652 By MS/MS 2 1.4387 1.5887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4387 1.5887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10532000 4724600 5807300 0 0 0 0 0 0 10532000 4724600 5807300 0 0 0 0 0 0 0 0 0 14909 3762 15523 76407;76408 77645;77646 77646 2 IIDDSEITK KEAYVHKSVMEELKRIIDDSEITKEDDALW MEELKRIIDDSEITKEDDALWPPPDRVGRQ R I I T K E 0 0 0 2 0 0 1 0 0 3 0 1 0 0 0 1 1 0 0 0 0 0 9 0 1032.5339 P61326;F5H6P7;F5H3U9;Q96A72;F5H6N1 Q96A72 65 73 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 0.0053299 57.96 By MS/MS By MS/MS By matching 1 1 2 0.88294 0.78762 91.232 4 Median NaN NaN NaN 0 0 Median 1.2253 1.0531 NaN 1 1 Median 0.80032 0.76911 NaN 1 0 Median 0.40544 0.33952 122.36 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15682000 9234100 6447400 0 0 0 3191200 1291200 1900000 7007300 3940500 3066800 5483000 4002400 1480600 0 0 0 0 0 0 14910 2556;3596 15524 76409;76410;76411;76412 77647;77648;77649 77647 3 IIDDSEITKEDDALWPPPDR KEAYVHKSVMEELKRIIDDSEITKEDDALW EITKEDDALWPPPDRVGRQELEIVIGDEHI R I I D R V 1 1 0 5 0 0 2 0 0 3 1 1 0 0 3 1 1 1 0 0 0 0 20 1 2324.1172 P61326;F5H6P7;F5H3U9;Q96A72;F5H6N1 Q96A72 65 84 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3 9.1561E-09 68.82 By MS/MS By matching By MS/MS By matching 1 1 2 2 0.7865 0.726 16.103 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59142 0.61071 NaN 1 0 Median 0.94604 0.83744 NaN 1 0 Median 0.70595 0.79723 18.142 2 0 Median 0.84972 0.6796 14.249 2 0 Median 81817000 46977000 34840000 0 0 0 0 0 0 32945000 19146000 13800000 124120 41282 82841 45524000 26230000 19294000 3223500 1560300 1663200 14911 2556;3596 15525 76413;76414;76415;76416;76417;76418 77650;77651;77652;77653;77654;77655;77656;77657 77655 8 IIDEDGLLNLIR SGQSKSDKAAALGTKIIDEDGLLNLIRTMP GTKIIDEDGLLNLIRTMPGKKSKYEIAVET K I I I R T 0 1 1 2 0 0 1 1 0 3 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1382.7769 P35251;H0Y8U4 P35251 469 480 RFC1 Replication factor C subunit 1 yes no 2 7.1992E-05 93.551 By matching By MS/MS By matching By matching 1 1 1 1 1.5358 1.4519 74.148 4 Median 1.4726 1.4895 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2052 1.3239 NaN 1 0 Median 1.6018 1.4152 NaN 1 0 Median 5.8271 6.1839 NaN 1 0 Median NaN NaN NaN 0 0 Median 5079600 1959200 3120500 882990 347940 535050 0 0 0 3287800 1475800 1812100 185780 74137 111640 723020 61324 661700 0 0 0 14912 2239 15526 76419;76420;76421;76422 77658 77658 1 IIDETMAQLQDLK NEIEKLKKEEQRHMKIIDETMAQLQDLKNQ MKIIDETMAQLQDLKNQHLAKKSEVNDKNH K I I L K N 1 0 0 2 0 2 1 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1516.7807 Q14683;G8JLG1 Q14683 862 874 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00013615 141.95 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 3 2 1.0046 0.96631 10.237 9 Median 1.0621 1.0251 NaN 1 0 Median 1.2666 1.0836 NaN 1 0 Median 0.88428 0.94273 NaN 1 0 Median 1.2055 1.0903 NaN 1 0 Median 0.92244 0.96631 8.6758 3 1 Plateau 1.1176 0.949 12.049 2 0 Median 70570000 33742000 36829000 7583200 3386000 4197100 1162200 492660 669500 20322000 10513000 9808200 2483900 1026700 1457300 37836000 17752000 20083000 1183800 570800 613020 14913 2889 15527;15528 76423;76424;76425;76426;76427;76428;76429;76430;76431 77659;77660;77661;77662;77663;77664;77665;77666;77667 77660 1578 9 IIDETMAQLQDLKNQHLAK NEIEKLKKEEQRHMKIIDETMAQLQDLKNQ TMAQLQDLKNQHLAKKSEVNDKNHEMEEIR K I I A K K 2 0 1 2 0 3 1 0 1 2 3 2 1 0 0 0 1 0 0 0 0 0 19 1 2208.1573 Q14683;G8JLG1 Q14683 862 880 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3;4 3.6284E-08 71.685 By MS/MS By MS/MS 2 1 0.94526 1.1032 19.124 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84065 0.97943 16.825 2 0 Median NaN NaN NaN 0 0 Median 1.1715 1.2694 NaN 1 0 Median NaN NaN NaN 0 0 Median 64780000 34155000 30626000 0 0 0 0 0 0 47218000 26717000 20500000 0 0 0 17563000 7437100 10126000 0 0 0 14914 2889 15529 76432;76433;76434 77668;77669;77670;77671;77672 77669 5 IIDEVVNK IRNPQQQESLKHATRIIDEVVNKFLDDLGN SLKHATRIIDEVVNKFLDDLGNAKSHLMSL R I I N K F 0 0 1 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 O95816 O95816 116 123 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.0093593 60.972 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 2 0.96157 0.83578 15.793 8 Median 0.94065 0.8819 38.489 2 0 Median 0.92296 0.78055 NaN 1 0 Median 0.98096 0.92204 NaN 1 0 Median 0.94256 0.78001 NaN 1 0 Median 0.85834 0.87643 NaN 1 0 Median 1.0317 0.83578 3.1743 2 0 Median 48666000 23159000 25506000 10278000 4621300 5656800 2632000 1255200 1376700 7607900 3737400 3870500 1702300 803440 898900 21010000 10039000 10970000 5435900 2702600 2733300 14915 1795 15530 76435;76436;76437;76438;76439;76440;76441;76442 77673;77674;77675;77676;77677;77678;77679 77678 7 IIDFLSALEGFK SRAIMYEETTYSKKKIIDFLSALEGFKVMC KKKIIDFLSALEGFKVMCKIIGIMEEVADG K I I F K V 1 0 0 1 0 0 1 1 0 2 2 1 0 2 0 1 0 0 0 0 0 0 12 0 1351.7388 P52701;A0A494C0M1;A0A087WWJ1 P52701 855 866 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00055672 75.294 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 1 5 2 1 1.0331 1.0215 16.484 14 Median 1.0382 1.0385 20.697 5 0 Median 1.3676 1.2154 NaN 1 0 Median 0.83579 0.90326 9.9589 5 0 Median 1.2476 1.0948 6.961 2 0 Median NaN NaN NaN 0 0 Median 1.2666 1.0958 NaN 1 0 Median 20198000 9885200 10313000 10698000 5175200 5523100 578490 262370 316120 7653900 3887400 3766500 1126200 494590 631590 0 0 0 141440 65618 75818 14916 2453 15531 76443;76444;76445;76446;76447;76448;76449;76450;76451;76452;76453;76454;76455;76456 77680;77681;77682;77683;77684;77685;77686;77687;77688;77689 77687 10 IIDGLLVMR SKCDWLDGKHVVFGKIIDGLLVMRKIENVP HVVFGKIIDGLLVMRKIENVPTGPNNKPKL K I I M R K 0 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1028.6052 C9JQD4;O43447;H0YEL5 C9JQD4 118 126 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 2 0.00098836 86.794 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 1 1.3193 1.1848 18.249 10 Median 1.2904 1.2302 19.497 3 0 Median 1.4544 1.2083 7.6744 2 0 Median 1.0841 1.0414 2.8687 2 0 Median 1.6076 1.3286 24.89 2 0 Median 0.9273 0.98118 NaN 1 0 Median NaN NaN NaN 0 0 Median 92889000 41652000 51237000 44607000 18917000 25690000 5510400 2450500 3060000 36370000 17640000 18730000 2449300 912210 1537100 3952400 1733200 2219200 0 0 0 14917 717 15532;15533 76457;76458;76459;76460;76461;76462;76463;76464;76465;76466 77690;77691;77692;77693;77694;77695;77696;77697;77698;77699 77696 253 10 IIDISDVFR ATYGTDKPDTRFGMKIIDISDVFRNTEIGF TRFGMKIIDISDVFRNTEIGFLQDALSKPH K I I F R N 0 1 0 2 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1076.5866 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54;A0A3B3ITK9 Q6PI48 341 349 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0008305 95.531 By matching By matching By MS/MS 2 2 1 1.0371 1.0311 14.587 5 Median 1.0087 0.99597 0.37588 2 0 Median 1.371 1.2042 21.948 2 0 Median 1.0371 1.0593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25451000 11239000 14212000 4922000 2365100 2556800 11828000 4566600 7261600 8701000 4307000 4394000 0 0 0 0 0 0 0 0 0 14918 3171 15534 76467;76468;76469;76470;76471 77700;77701 77701 2 IIDKEGDDYEVIPNSNFYVSR HKDIQSCTVEVHFQKIIDKEGDDYEVIPNS DDYEVIPNSNFYVSRTACRDNTSVYHISGK K I I S R T 0 1 2 3 0 0 2 1 0 3 0 1 0 1 1 2 0 0 2 2 0 0 21 1 2472.1809 Q9NTJ3;E9PD53;C9JR83;C9JVD8;C9J578;C9J9E4 Q9NTJ3 167 187 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 5.6367E-23 113.51 By MS/MS By MS/MS By MS/MS 1 1 1 0.9122 0.90984 5.5038 3 Median 0.9122 0.90984 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75257 0.85344 NaN 1 0 Median 0.98641 0.95226 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60727000 34383000 26344000 39123000 24102000 15021000 0 0 0 20640000 9758200 10882000 963170 522810 440360 0 0 0 0 0 0 14919 4108 15535 76472;76473;76474 77702;77703;77704;77705 77702 4 IIDKNGIHDLDNISFPK LQKRFILNLPTFSVRIIDKNGIHDLDNISF DKNGIHDLDNISFPKQGS____________ R I I P K Q 0 0 2 3 0 0 0 1 1 4 1 2 0 1 1 1 0 0 0 0 0 0 17 1 1938.0211 P49721;A0A087WVV1 P49721 182 198 PSMB2 Proteasome subunit beta type-2 yes no 3 0.0062411 25.319 By MS/MS By matching By matching By matching 1 1 1 1 1.0883 1.0646 17.63 4 Median 0.83641 0.84963 NaN 1 0 Median 1.171 1.0734 NaN 1 0 Median 1.0412 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1375 1.3078 NaN 1 0 Median NaN NaN NaN 0 0 Median 22484000 11364000 11120000 18159000 9437900 8720700 1172800 514290 658470 1652800 701990 950780 0 0 0 1500100 710170 789890 0 0 0 14920 2392 15536 76475;76476;76477;76478 77706 77706 1 IIDPLPPIDHSEIDYPPFEK LEYDSDGNPIAPTKKIIDPLPPIDHSEIDY PPIDHSEIDYPPFEKNFYNEHEEITNLTPQ K I I E K N 0 0 0 3 0 0 2 0 1 4 1 1 0 1 5 1 0 0 1 0 0 0 20 0 2334.1784 Q86XP3;A0A0A0MSJ0 Q86XP3 196 215 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 0.00011198 36.856 By matching By MS/MS By matching 1 2 1 0.38495 0.40341 4.6426 4 Median 0.38494 0.3904 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.37194 0.40473 6.5611 2 0 Median NaN NaN NaN 0 0 Median 0.39081 0.41686 NaN 1 0 Median NaN NaN NaN 0 0 Median 14633000 10086000 4546900 523280 394460 128810 0 0 0 12592000 8746400 3845700 0 0 0 1517800 945470 572370 0 0 0 14921 3302 15537 76479;76480;76481;76482 77707;77708;77709;77710;77711;77712;77713;77714;77715;77716 77708 10 IIDRIHGTEEGQQILK VEAVLQLQDCSIFIKIIDRIHGTEEGQQIL IDRIHGTEEGQQILKQPVSERLDFVCSFLQ K I I L K Q 0 1 0 1 0 2 2 2 1 4 1 1 0 0 0 0 1 0 0 0 0 0 16 1 1849.0058 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;F5H1L0;F8W6T3;F5H068;F5H073;F5GWK2;F5GWA2;F5H4Y4;F5H7R5;Q14980 Q14980 39 54 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 1.1508E-08 130.06 By MS/MS By MS/MS 2 4 0.99216 1.1434 15.988 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99216 1.1886 8.0718 2 0 Median NaN NaN NaN 0 0 Median 0.94633 1.0597 18.923 4 0 Median NaN NaN NaN 0 0 Median 115730000 56558000 59168000 0 0 0 0 0 0 78655000 37822000 40833000 0 0 0 37071000 18736000 18335000 0 0 0 14922 2905;77 15538 76483;76484;76485;76486;76487;76488 77717;77718;77719;77720;77721 77718 5 IIDSVRGELQK TREWTDGLFTHVLRKIIDSVRGELQKRQWI VLRKIIDSVRGELQKRQWIVFDGDVDPEWV K I I Q K R 0 1 0 1 0 1 1 1 0 2 1 1 0 0 0 1 0 0 0 1 0 0 11 1 1256.7089 Q14204;A0A2R8YFZ7 Q14204 2287 2297 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.00064662 85.676 By MS/MS By MS/MS 2 2 1.0134 1.0868 10.002 4 Median 1.0134 1.0451 5.3485 2 0 Median NaN NaN NaN 0 0 Median 1.0178 1.1785 11.276 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23649000 11326000 12323000 11861000 5891800 5969200 0 0 0 11788000 5433900 6353600 0 0 0 0 0 0 0 0 0 14923 2865 15539 76489;76490;76491;76492 77722;77723;77724;77725;77726;77727;77728 77724 7 IIDSVRGELQKR TREWTDGLFTHVLRKIIDSVRGELQKRQWI LRKIIDSVRGELQKRQWIVFDGDVDPEWVE K I I K R Q 0 2 0 1 0 1 1 1 0 2 1 1 0 0 0 1 0 0 0 1 0 0 12 2 1412.81 Q14204;A0A2R8YFZ7 Q14204 2287 2298 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0016418 42.095 By MS/MS 1 0.67203 0.76454 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67203 0.76454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945300 1067300 877950 0 0 0 0 0 0 1945300 1067300 877950 0 0 0 0 0 0 0 0 0 14924 2865 15540 76493 77729 77729 1 IIDTPQFQR DPIHGHIELHPLLVRIIDTPQFQRLRYIKQ HPLLVRIIDTPQFQRLRYIKQLGGGYYVFP R I I Q R L 0 1 0 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 9 0 1116.5928 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9;A0A2R8Y586 Q9Y3Z3 135 143 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 6.9685E-05 150.17 By MS/MS By MS/MS By matching 1 1 1 1.0183 0.96452 4.6776 3 Median 1.0183 0.96452 NaN 1 0 Median 1.0295 0.89086 NaN 1 0 Median 0.84835 0.96749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30968000 16223000 14745000 15530000 8130300 7399300 8732300 4434800 4297600 6706300 3657900 3048500 0 0 0 0 0 0 0 0 0 14925 4436 15541 76494;76495;76496 77730;77731;77732 77731 3 IIDVVYNASNNELVR IHTVRVRGGCTRKTRIIDVVYNASNNELVR IIDVVYNASNNELVRTKTLVKNCIVLIDST R I I V R T 1 1 3 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 3 0 0 15 0 1717.8999 Q5JR95;P62241 Q5JR95 58 72 RPS8 40S ribosomal protein S8 yes no 2;3 4.8899E-46 217.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 3 3 5 6 1.1681 1.0314 30.471 30 Median 1.0711 1.0233 52.7 8 0 Median 1.1513 0.97389 2.6703 5 0 Median 1.1663 1.12 7.7042 3 0 Median 1.4511 1.2049 22.356 3 0 Median 1.3146 1.3737 16.288 5 1 Median 1.2835 1.0632 14.754 6 0 Median 996790000 456670000 540120000 702730000 325970000 376760000 58345000 26537000 31808000 39410000 17872000 21539000 6033800 2414700 3619000 160230000 70997000 89230000 30043000 12882000 17160000 14926 2573 15542 76497;76498;76499;76500;76501;76502;76503;76504;76505;76506;76507;76508;76509;76510;76511;76512;76513;76514;76515;76516;76517;76518;76519;76520;76521;76522;76523;76524;76525;76526 77733;77734;77735;77736;77737;77738;77739;77740;77741;77742;77743;77744;77745;77746;77747;77748;77749;77750;77751;77752;77753;77754;77755;77756;77757;77758;77759;77760;77761;77762;77763 77736 31 IIDYSQMDELALLSLR FNPEAFKPGNTHKCRIIDYSQMDELALLSL IDYSQMDELALLSLRTSIIEAQYLRYHDIE R I I L R T 1 1 0 2 0 1 1 0 0 2 4 0 1 0 0 2 0 0 1 0 0 0 16 0 1878.9761 Q14690;A0A3B3IUD7 Q14690 421 436 PDCD11 Protein RRP5 homolog yes no 2 0.0010166 39.266 By matching By MS/MS 1 1 1.2628 1.2585 10.087 2 Median NaN NaN NaN 0 0 Median 1.5192 1.3515 NaN 1 0 Median 1.0497 1.1718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 831760 356250 475510 0 0 0 230770 80009 150760 600990 276240 324750 0 0 0 0 0 0 0 0 0 14927 448 15543 76527;76528 77764 77764 1 IIEAMGFTGPLK DSPQPVEEKVGAFTKIIEAMGFTGPLKYSK FTKIIEAMGFTGPLKYSKWVNPYILKKNMI K I I L K Y 1 0 0 0 0 0 1 2 0 2 1 1 1 1 1 0 1 0 0 0 0 0 12 0 1275.6897 B1AKV4;F6UTR7;Q9NVA1;F8WCR2;B1AKV2;B1AKV6;B1AKV3 B1AKV4 96 107 UQCC1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 yes no 2 4.456E-06 103.7 By MS/MS By MS/MS By matching 1 1 1 0.97375 0.92388 31.049 3 Median 0.78807 0.73571 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97375 0.92388 NaN 1 0 Median 1.6544 1.3597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16730000 8439600 8290400 12328000 6485000 5842900 0 0 0 4008700 1800600 2208100 393370 153950 239420 0 0 0 0 0 0 14928 568 15544 76529;76530;76531 77765;77766;77767 77766 3 IIEDCSNSEETVK NVADILFVRTSYVKKIIEDCSNSEETVKLL KKIIEDCSNSEETVKLLRFCCWENPQFSST K I I V K L 0 0 1 1 1 0 3 0 0 2 0 1 0 0 0 2 1 0 0 1 0 0 13 0 1522.6821 Q93008 Q93008 2289 2301 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 1.3462E-05 95.81 By MS/MS 1 1.1488 1.0053 NaN 1 Median NaN NaN NaN 0 0 Median 1.1488 1.0053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2088500 1021200 1067300 0 0 0 2088500 1021200 1067300 0 0 0 0 0 0 0 0 0 0 0 0 14929 3573 15545 76532 77768;77769 77769 2 IIEDLRAQIFANTVDNAR EKKGPQVRDWSHYFKIIEDLRAQIFANTVD DLRAQIFANTVDNARIVLQIDNARLAADDF K I I A R I 3 2 2 2 0 1 1 0 0 3 1 0 0 1 0 0 1 0 0 1 0 0 18 1 2058.0858 P05783;F8VZY9 P05783 132 149 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.0008032 32.926 By matching By MS/MS 1 1 1.1466 1.2186 9.5968 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0918 1.1386 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2042 1.3042 NaN 1 0 Median NaN NaN NaN 0 0 Median 13000000 5417900 7582000 0 0 0 0 0 0 1420200 830830 589380 0 0 0 11580000 4587100 6992700 0 0 0 14930 1869 15546 76533;76534 77770 77770 1 IIEDQQESLNK WEVLEGEVEKEALKKIIEDQQESLNKWKSK ALKKIIEDQQESLNKWKSKGRRFKGKGKGN K I I N K W 0 0 1 1 0 2 2 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1315.662 P05455 P05455 318 328 SSB Lupus La protein yes yes 2 0.00011141 138.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.1424 1.0053 14.374 6 Median 1.0354 0.9541 NaN 1 0 Median 1.2742 1.0877 21.341 2 0 Median 1.1844 1.1487 NaN 1 0 Median 1.1791 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0242 0.85818 NaN 1 0 Median 84937000 40146000 44791000 28797000 14348000 14449000 35844000 16484000 19360000 10016000 4688900 5327000 8527200 3830500 4696800 0 0 0 1753100 793800 959320 14931 1867 15547 76535;76536;76537;76538;76539;76540 77771;77772;77773;77774;77775;77776;77777;77778;77779;77780 77773 10 IIEDQQESLNKWK WEVLEGEVEKEALKKIIEDQQESLNKWKSK KKIIEDQQESLNKWKSKGRRFKGKGKGNKA K I I W K S 0 0 1 1 0 2 2 0 0 2 1 2 0 0 0 1 0 1 0 0 0 0 13 1 1629.8362 P05455 P05455 318 330 SSB Lupus La protein yes yes 3 0.0025232 53.6 By MS/MS By MS/MS 1 1 1.4129 1.4241 3.1741 2 Median 1.4628 1.3925 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3648 1.4564 NaN 1 1 Median NaN NaN NaN 0 0 Median 27688000 11418000 16270000 20101000 8764300 11337000 0 0 0 0 0 0 0 0 0 7587000 2654000 4933000 0 0 0 14932 1867 15548 76541;76542 77781;77782 77781 2 IIEEAPAPGIK YLFERDCSVQRRHQKIIEEAPAPGIKSEVR RHQKIIEEAPAPGIKSEVRKKLGEAAVRAA K I I I K S 2 0 0 0 0 0 2 1 0 3 0 1 0 0 2 0 0 0 0 0 0 0 11 0 1136.6441 G5E9X5;F5GYT8;E9PG35;E9PHF7;Q96RQ3 G5E9X5 247 257 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes no 2 0.0042699 48.283 By MS/MS By matching 1 1 0.89164 0.82021 34.578 2 Median 0.67371 0.6423 NaN 1 0 Median 1.1801 1.0474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5670400 3095700 2574700 4030600 2337900 1692600 1639800 757760 882030 0 0 0 0 0 0 0 0 0 0 0 0 14933 921 15549 76543;76544 77783 77783 1 IIEENIPELLSLNLSNNR DVVLNRRSCMAATLRIIEENIPELLSLNLS ENIPELLSLNLSNNRLYRLDDMSSIVQKAP R I I N R L 0 1 4 0 0 0 3 0 0 3 4 0 0 0 1 2 0 0 0 0 0 0 18 0 2080.1164 Q9UBU9;E9PIN3;B4E227 Q9UBU9 259 276 NXF1 Nuclear RNA export factor 1 yes no 2 0.0029732 31.639 By matching By MS/MS 1 2 0.89928 0.94731 10.621 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0854 0.94731 NaN 1 0 Median 0.84153 0.87104 13.366 2 0 Median NaN NaN NaN 0 0 Median 1567600 938750 628890 0 0 0 0 0 0 0 0 0 78620 33985 44635 1489000 904770 584260 0 0 0 14934 4249 15550 76545;76546;76547 77784 77784 1 IIEETLALK ______________________________ LEVNNRIIEETLALKFENAAAGNKPEAVEV R I I L K F 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1028.6118 O15144;C9JTV5;G5E9J0;G5E9S7 O15144 10 18 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.0012806 83.265 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2299 1.1063 6.0514 4 Median 1.1009 0.99423 NaN 1 0 Median 1.3592 1.1373 NaN 1 0 Median 1.132 1.0913 NaN 1 0 Median 1.3364 1.1216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249140000 111140000 138010000 163410000 73580000 89826000 46488000 19857000 26631000 31748000 14508000 17240000 7500600 3189700 4310900 0 0 0 0 0 0 14935 1526 15551 76548;76549;76550;76551 77785;77786;77787;77788;77789;77790;77791;77792 77786 8 IIEFVPTK HSSVPLLNSKDPIDRIIEFVPTKTPYDPRW SKDPIDRIIEFVPTKTPYDPRWMLAGRPHP R I I T K T 0 0 0 0 0 0 1 0 0 2 0 1 0 1 1 0 1 0 0 1 0 0 8 0 945.55352 Q13085;Q59FY4 Q13085 1922 1929 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0054455 75.738 By MS/MS By MS/MS 2 2 0.86089 0.8052 22.015 4 Median 0.70332 0.68569 8.5203 2 0 Median 1.1083 0.97288 12.551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16023000 8529800 7493600 11879000 6670300 5208600 4144500 1859500 2285000 0 0 0 0 0 0 0 0 0 0 0 0 14936 2784 15552 76552;76553;76554;76555 77793;77794;77795 77793 3 IIEHNIR YPDYYKIILEPMDLKIIEHNIRNDKYAGEE ILEPMDLKIIEHNIRNDKYAGEEGMIEDMK K I I I R N 0 1 1 0 0 0 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 7 0 893.5083 Q86U86;E7EVG2;H0Y5B5 Q86U86 570 576 PBRM1 Protein polybromo-1 yes no 2 0.026776 52.683 By MS/MS 1 0.87241 0.96995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87241 0.96995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1170300 605200 565110 0 0 0 0 0 0 1170300 605200 565110 0 0 0 0 0 0 0 0 0 14937 3273 15553 76556 77796 77796 1 IIENAENEYQTAISENYQTMSDTTFK LTVSNEAQTAKEFIKIIENAENEYQTAISE AISENYQTMSDTTFKALRRQLPVTRTKIDW K I I F K A 2 0 3 1 0 2 4 0 0 3 0 1 1 1 0 2 4 0 2 0 0 0 26 0 3039.3655 P52907 P52907 231 256 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 2.068E-27 87.102 By MS/MS By matching 1 1 1.2 1.1722 3.4233 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1895 1.1442 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2106 1.2009 NaN 1 0 Median NaN NaN NaN 0 0 Median 9322900 4466900 4856000 0 0 0 0 0 0 8764300 4181200 4583100 0 0 0 558630 285760 272860 0 0 0 14938 2461 15554 76557;76558 77797;77798 77798 2 IIENELEGFGIR ILIVLDVLKPLGHKKIIENELEGFGIRLNS HKKIIENELEGFGIRLNSKPPNIGFKKKDK K I I I R L 0 1 1 0 0 0 3 2 0 3 1 0 0 1 0 0 0 0 0 0 0 0 12 0 1388.73 Q9Y295 Q9Y295 160 171 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 2.2273E-06 166.33 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.1603 1.016 19.469 5 Median 1.1761 1.1695 NaN 1 0 Median 1.1603 1.0112 NaN 1 0 Median 1.2438 1.36 NaN 1 0 Median 1.0222 0.90425 16.48 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50950000 21691000 29259000 8595200 3717200 4878000 19885000 8336600 11549000 21102000 8800600 12301000 1367600 836310 531300 0 0 0 0 0 0 14939 4382 15555 76559;76560;76561;76562;76563 77799;77800;77801;77802;77803;77804 77800 6 IIEPIQSR SKTTRFALACNASDKIIEPIQSRCAVLRYT ACNASDKIIEPIQSRCAVLRYTKLTDAQIL K I I S R C 0 1 0 0 0 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 0 8 0 954.54983 P35250;A0A087WVY3;H7C5P4 P35250 177 184 RFC2 Replication factor C subunit 2 yes no 2 0.0055363 75.213 By MS/MS By MS/MS By MS/MS 1 2 1 1.1444 1.0625 13.429 4 Median NaN NaN NaN 0 0 Median 1.4165 1.2213 NaN 1 1 Median 0.92337 0.95293 0.43885 2 0 Median 1.3469 1.1809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11490000 5527000 5962900 0 0 0 2766400 1106600 1659800 6792200 3584800 3207500 1931300 835610 1095700 0 0 0 0 0 0 14940 2238 15556 76564;76565;76566;76567 77805;77806;77807;77808 77806 4 IIEPLTSR SKTTRFCLICNYVSRIIEPLTSRCSKFRFK ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ R I I S R C 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 8 0 927.53893 P35249;C9JZI1;C9J8M3 P35249 186 193 RFC4 Replication factor C subunit 4 yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.98708 0.97065 10.585 4 Median 1.0025 0.99433 NaN 1 1 Median 0.92998 0.81 NaN 1 1 Median 0.97195 0.94753 NaN 1 0 Median 1.1979 1.0294 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25186000 12135000 13051000 5067400 2224300 2843100 6122300 3405400 2716900 10260000 4819500 5440100 3737200 1686100 2051100 0 0 0 0 0 0 14941 2237 15557 76568;76569;76570;76571 77809;77810;77811;77812;77813 77810 5 IIEPVAAMR DLVFTDASPQAVWNRIIEPVAAMRKEADML QAVWNRIIEPVAAMRKEADMLRLFPEYLKG R I I M R K 2 1 0 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 9 0 998.55829 O14686 O14686 5267 5275 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 7.0611E-06 129.4 By MS/MS By MS/MS 1 1 0.76031 0.72834 4.441 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66878 0.70583 NaN 1 1 Median 0.86438 0.75158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11364000 6391400 4972200 0 0 0 0 0 0 10671000 6035200 4635800 692470 356110 336360 0 0 0 0 0 0 14942 1490 15558 76572;76573 77814;77815 77814 2 IIEQVLER MAYVFGGAYVPLSCRIIEQVLERRSWQGLD YVPLSCRIIEQVLERRSWQGLDEVVRLLNC R I I E R R 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 998.57605 F5H008;A0A2R8YDQ0;Q9H267 F5H008 497 504 VPS33B Vacuolar protein sorting-associated protein 33B yes no 2 0.0023123 112.17 By matching By MS/MS By matching 1 1 1 1.2685 1.5148 23.103 3 Plateau 1.1483 1.1193 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5865 1.6203 NaN 1 0 Median 1.2685 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15623000 6309200 9314200 4685400 2072700 2612800 0 0 0 8808900 3237100 5571800 2129000 999400 1129600 0 0 0 0 0 0 14943 397 15559 76574;76575;76576 77816;77817 77817 2 IIETLTQQLQAK EVLPALENNKEQIQKIIETLTQQLQAKGKE IQKIIETLTQQLQAKGKELNEFREKHNIRL K I I A K G 1 0 0 0 0 3 1 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1384.7926 Q9UHV9 Q9UHV9 100 111 PFDN2 Prefoldin subunit 2 yes yes 2 4.2972E-06 163.32 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1.3048 1.1562 9.6882 9 Median 1.2214 1.1317 3.0264 2 0 Median 1.3505 1.1351 2.1889 2 0 Median 1.3048 1.3019 8.1475 3 0 Median 1.3555 1.128 7.4606 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 241790000 108520000 133270000 158940000 72504000 86435000 66071000 28770000 37301000 14268000 6240400 8027300 2517800 1006000 1511700 0 0 0 0 0 0 14944 4284 15560 76577;76578;76579;76580;76581;76582;76583;76584;76585 77818;77819;77820;77821;77822;77823;77824;77825;77826;77827;77828;77829;77830 77819 13 IIETPGIR FFAFLQTGNYKEAKKIIETPGIRARSARLQ NYKEAKKIIETPGIRARSARLQWFCDRCVA K I I I R A 0 1 0 0 0 0 1 1 0 3 0 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 P42704 P42704 910 917 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0037995 85.265 By MS/MS By MS/MS 1 1 1.0932 0.9759 7.1292 2 Median 0.96115 0.92793 NaN 1 0 Median 1.2433 1.0264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46222000 20482000 25739000 7333600 3382500 3951100 38888000 17100000 21788000 0 0 0 0 0 0 0 0 0 0 0 0 14945 2315 15561 76586;76587 77831;77832;77833;77834 77833 4 IIEVAPQVATQNVNPTPGATS VEKGNRTARIIDKPRIIEVAPQVATQNVNP QVATQNVNPTPGATS_______________ R I I T S - 3 0 2 0 0 2 1 1 0 2 0 0 0 0 3 1 3 0 0 3 0 0 21 0 2106.0957 P49903 P49903 372 392 SEPHS1 Selenide, water dikinase 1 yes yes 2 0.0013652 46.069 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32563000 0 0 8224200 0 0 0 0 0 24339000 0 0 0 0 0 0 0 0 0 0 0 14946 2404 15562 76588;76589 77835;77836 77836 2 IIEVGDTPK IVTSGLIMQLLAGAKIIEVGDTPKDRALFN LLAGAKIIEVGDTPKDRALFNGAQKLFGMI K I I P K D 0 0 0 1 0 0 1 1 0 2 0 1 0 0 1 0 1 0 0 1 0 0 9 0 970.53351 B4DR61;P61619;H7C1Q9;C9JXC6;H7C069;A6NK38;F2Z2C7;A6NIF9;C9JJV4;F8W776;Q8TC24;Q9H9S3 B4DR61 105 113 SEC61A1;SEC61A2 Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2 yes no 2 0.0025948 70.919 By MS/MS By MS/MS By MS/MS 2 1 2 1.0582 0.90163 19.762 5 Median NaN NaN NaN 0 0 Median 0.87277 0.76558 10.515 2 0 Median 1.0812 1.1772 NaN 1 0 Median 1.147 0.97116 10.507 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32580000 15665000 16915000 0 0 0 28062000 13758000 14304000 2694600 1124900 1569600 1823300 781670 1041600 0 0 0 0 0 0 14947 601 15563 76590;76591;76592;76593;76594 77837;77838;77839;77840;77841;77842 77839 6 IIEVGDTPKDR IVTSGLIMQLLAGAKIIEVGDTPKDRALFN AGAKIIEVGDTPKDRALFNGAQKLFGMIIT K I I D R A 0 1 0 2 0 0 1 1 0 2 0 1 0 0 1 0 1 0 0 1 0 0 11 1 1241.6616 B4DR61;P61619;H7C1Q9;C9JXC6;H7C069;A6NK38;F2Z2C7;A6NIF9;C9JJV4;F8W776;Q8TC24;Q9H9S3 B4DR61 105 115 SEC61A1;SEC61A2 Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2 yes no 2;3 0.008771 56.729 By MS/MS By MS/MS 1 1 0.9852 1.0697 20.167 2 Median 1.2067 1.2336 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.80437 0.9275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3004400 1403000 1601400 2285500 980810 1304600 0 0 0 718960 422210 296750 0 0 0 0 0 0 0 0 0 14948 601 15564 76595;76596 77843;77844 77844 2 IIEVSGQK MADCPHTIGVEFGTRIIEVSGQKIKLQIWD GVEFGTRIIEVSGQKIKLQIWDTAGQERFR R I I Q K I 0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 872.49673 P61106;X6RFL8 P61106 52 59 RAB14 Ras-related protein Rab-14 yes no 2 0.0074447 67.032 By MS/MS By matching 1 2 1.1044 1.0216 20.855 3 Median 1.0986 1.0216 NaN 1 0 Median 1.3573 1.1741 27.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8067000 3563500 4503600 6451200 2908800 3542400 1615900 654670 961180 0 0 0 0 0 0 0 0 0 0 0 0 14949 2545 15565 76597;76598;76599 77845;77846 77845 2 IIEVVDAIMTTAQSHQR CGTDMTIGTDSALHRIIEVVDAIMTTAQSH EVVDAIMTTAQSHQRTFVLEVMGRHCGYLA R I I Q R T 2 1 0 1 0 2 1 0 1 3 0 0 1 0 0 1 2 0 0 2 0 0 17 0 1910.9884 Q01813;Q5VSR5 Q01813 194 210 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 2.1734E-05 66.262 By MS/MS By MS/MS 2 1 0.89005 0.83097 2.8658 3 Median 0.87858 0.84528 3.8054 2 0 Median 0.96033 0.83097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15387000 8320600 7066000 9977500 5471400 4506100 5409100 2849200 2559900 0 0 0 0 0 0 0 0 0 0 0 0 14950 2692 15566 76600;76601;76602 77847;77848;77849;77850;77851 77849 5 IIFDDFR SPSIVLSARGGDGSRIIFDDFREAYYWLRH ARGGDGSRIIFDDFREAYYWLRHNTPEDAK R I I F R E 0 1 0 2 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 7 0 924.47052 P46977 P46977 500 506 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.001798 111.28 By MS/MS By matching By matching 5 3 2 1.1418 1.0758 19.264 10 Median 1.042 0.98239 27.159 5 0 Median 1.3328 1.1336 3.751 3 0 Median 1.0384 1.1392 16.372 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58097000 26057000 32039000 39711000 18523000 21189000 13112000 5223800 7888000 5273400 2310700 2962800 0 0 0 0 0 0 0 0 0 14951 2352 15567 76603;76604;76605;76606;76607;76608;76609;76610;76611;76612 77852;77853;77854;77855;77856 77853 5 IIFEDDR DTIFGKIIRKEIPAKIIFEDDRCLAFHDIS IRKEIPAKIIFEDDRCLAFHDISPQAPTHF K I I D R C 0 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 906.4447 P49773;D6RC06;D6REP8;D6RE99;D6RD60 P49773 31 37 HINT1 Histidine triad nucleotide-binding protein 1 yes no 2 0.00777 88.029 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0325 1.036 25.786 5 Median 1.1915 1.1629 NaN 1 1 Median 0.82807 0.79577 37.303 2 0 Median 1.0325 1.047 NaN 1 0 Median 1.0246 0.81918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29577000 13516000 16061000 3007600 1247400 1760200 19049000 8754700 10295000 7390800 3454300 3936600 129570 59535 70038 0 0 0 0 0 0 14952 2399 15568 76613;76614;76615;76616;76617 77857;77858;77859 77858 3 IIFHSGPTNSGK IPPNWYPDARAMQRKIIFHSGPTNSGKTYH QRKIIFHSGPTNSGKTYHAIQKYFSAKSGV K I I G K T 0 0 1 0 0 0 0 2 1 2 0 1 0 1 1 2 1 0 0 0 0 0 12 0 1256.6513 Q8IYB8 Q8IYB8 202 213 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 3 0.047012 15.756 By MS/MS By matching 1 1 0.60385 0.57412 38.268 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85853 0.75252 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42472 0.43801 NaN 1 0 Median 975530 530420 445100 0 0 0 0 0 0 0 0 0 423560 182530 241040 0 0 0 551960 347900 204070 14953 3342 15569 76618;76619 77860 77860 1 IIFSEHLPLSK LACLSEEGNEIESGKIIFSEHLPLSKLQQG ESGKIIFSEHLPLSKLQQGIKSGTYLQGTF K I I S K L 0 0 0 0 0 0 1 0 1 2 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1282.7285 Q9Y2L1;G3V1J5;F2Z2C0 Q9Y2L1 226 236 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.050823 15.202 By matching By matching By MS/MS 1 1 2 1.0517 1.0026 17.887 4 Median 0.91822 0.91137 NaN 1 0 Median 1.2046 1.0821 NaN 1 0 Median 1.03 1.1163 25.991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7683100 3689900 3993200 2420500 1254500 1165900 520820 213790 307030 4741800 2221600 2520200 0 0 0 0 0 0 0 0 0 14954 4384 15570 76620;76621;76622;76623 77861;77862 77861 2 IIFSPVAPK NIQQYAQNMGLPQNRIIFSPVAPKEEHVRR GLPQNRIIFSPVAPKEEHVRRGQLADVCLD R I I P K E 1 0 0 0 0 0 0 0 0 2 0 1 0 1 2 1 0 0 0 1 0 0 9 0 970.58515 O15294 O15294 900 908 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.015224 43.769 By MS/MS By matching 2 2 0.67374 0.64726 52.83 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59409 0.64408 10.661 2 0 Median 1.2153 1.041 77.165 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17906000 10157000 7748800 0 0 0 0 0 0 14673000 8354700 6318400 3233100 1802800 1430400 0 0 0 0 0 0 14955 1537 15571 76624;76625;76626;76627 77863;77864 77863 2 IIFVVGGPGSGK REDDLRAREKLKKTKIIFVVGGPGSGKGTQ KTKIIFVVGGPGSGKGTQCEKIVQKYGYTH K I I G K G 0 0 0 0 0 0 0 4 0 2 0 1 0 1 1 1 0 0 0 2 0 0 12 0 1129.6495 Q5T9B7;P00568 Q5T9B7 26 37 AK1 Adenylate kinase isoenzyme 1 yes no 2 5.2871E-06 99.815 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1 1.0116 0.94369 21.267 11 Median 0.95744 0.90201 11.395 4 0 Median 1.1563 0.97122 13.462 4 0 Median 0.97192 0.91108 NaN 1 0 Median 1.5228 1.2567 NaN 1 0 Median 1.5227 1.6095 NaN 1 0 Median NaN NaN NaN 0 0 Median 94784000 47059000 47725000 72874000 36861000 36014000 9874000 4212800 5661100 10469000 5356400 5112200 868930 352610 516320 697730 276350 421380 0 0 0 14956 1825 15572 76628;76629;76630;76631;76632;76633;76634;76635;76636;76637;76638 77865;77866;77867;77868;77869;77870;77871;77872 77866 8 IIGAGKPWHK EKCSRCGDSVYAAEKIIGAGKPWHKNCFRC YAAEKIIGAGKPWHKNCFRCAKCGKSLEST K I I H K N 1 0 0 0 0 0 0 2 1 2 0 2 0 0 1 0 0 1 0 0 0 0 10 1 1105.6396 Q16527;F8VQR7;F8VW96 Q16527 132 141 CSRP2 Cysteine and glycine-rich protein 2 yes no 2 0.056002 42.109 By MS/MS 1 0.94479 0.94331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94479 0.94331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4450500 2227900 2222600 0 0 0 0 0 0 4450500 2227900 2222600 0 0 0 0 0 0 0 0 0 14957 2984 15573 76639 77873 77873 1 IIGATDSSGELMFLMK ADKPRGFARGLDPERIIGATDSSGELMFLM IGATDSSGELMFLMKWKDSDEADLVLAKEA R I I M K W 1 0 0 1 0 0 1 2 0 2 2 1 2 1 0 2 1 0 0 0 0 0 16 0 1711.8525 P83916;B5MD17;J3KS05;K7ELA4;Q13185 Q13185 126 141 CBX1;CBX3 Chromobox protein homolog 1;Chromobox protein homolog 3 no no 2 9.5703E-10 101.95 By MS/MS By matching By matching By matching By MS/MS By MS/MS 4 3 4 3 16 15 1.0613 1.0663 26.517 44 Plateau 1.004 0.95011 4.8421 4 0 Median 1.0289 0.87175 8.216 3 0 Median 0.95615 0.90479 15.763 4 0 Median 1.1464 0.9497 4.5995 3 0 Median 1.0396 1.0857 6.8775 16 0 Median 1.7849 1.4516 41.365 14 1 Linear 783610000 371510000 412100000 36956000 17782000 19174000 3075700 1457700 1618000 4971900 2511500 2460400 5330600 2589500 2741100 676080000 321600000 354470000 57195000 25561000 31634000 14958 2795;2663 15574;15575;15576 76640;76641;76642;76643;76644;76645;76646;76647;76648;76649;76650;76651;76652;76653;76654;76655;76656;76657;76658;76659;76660;76661;76662;76663;76664;76665;76666;76667;76668;76669;76670;76671;76672;76673;76674;76675;76676;76677;76678;76679;76680;76681;76682;76683;76684 77874;77875;77876;77877;77878;77879;77880;77881;77882;77883;77884;77885;77886;77887;77888;77889;77890;77891;77892;77893;77894;77895;77896;77897;77898;77899;77900;77901;77902;77903;77904 77897 1347;1348 31 IIGAVDQIQLTQAQLEER SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL AVDQIQLTQAQLEERQAEMEGAVQSIQGEL K I I E R Q 2 1 0 1 0 4 2 1 0 3 2 0 0 0 0 0 1 0 0 1 0 0 18 0 2024.0902 Q6NZI2 Q6NZI2 61 78 PTRF Polymerase I and transcript release factor yes yes 2;3 1.0707E-05 62.924 By matching By MS/MS By matching By matching 1 2 1 1 1.1262 1.122 59.621 5 Median 0.39037 0.4362 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3827 1.3824 29.512 2 1 Median 1.1262 0.97304 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.439 2.004 NaN 1 0 Median 14058000 5894500 8163400 1413100 1047200 365900 0 0 0 12163000 4654000 7508600 186820 95598 91220 0 0 0 295320 97612 197710 14959 3147 15577 76685;76686;76687;76688;76689 77905;77906 77906 2 IIGDASTQTDALK SNSVLQGAVPTVTAKIIGDASTQTDALKLP AKIIGDASTQTDALKLPPSQPPRLLKNKAL K I I L K L 2 0 0 2 0 1 0 1 0 2 1 1 0 0 0 1 2 0 0 0 0 0 13 0 1331.6933 Q5VZL5;H7C1I7 Q5VZL5 919 931 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.0001139 97.734 By MS/MS 1 1.7537 1.935 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7537 1.935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12306000 3983700 8322400 0 0 0 0 0 0 12306000 3983700 8322400 0 0 0 0 0 0 0 0 0 14960 3117 15578 76690 77907 77907 1 IIGDPYK IQDGSQNTNVDKPLRIIGDPYKVQQACEMV TNVDKPLRIIGDPYKVQQACEMVMDILRER R I I Y K V 0 0 0 1 0 0 0 1 0 2 0 1 0 0 1 0 0 0 1 0 0 0 7 0 804.43815 Q92945;A0A087WTP3;M0R0I5;M0QYH3 Q92945 285 291 KHSRP Far upstream element-binding protein 2 yes no 2 0.026776 52.683 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.1031 0.95968 5.4752 7 Median 1.0368 1.0103 NaN 1 0 Median 1.1411 1.0006 NaN 1 0 Median 0.87522 0.94792 NaN 1 0 Median 1.106 0.95555 0.60978 2 0 Median NaN NaN NaN 0 0 Median 1.1183 0.93025 10.702 2 0 Median 43251000 21154000 22098000 2838600 1404000 1434600 3705900 1700300 2005700 21680000 11068000 10612000 11496000 5341200 6154600 0 0 0 3531100 1640700 1890400 14961 3568 15579 76691;76692;76693;76694;76695;76696;76697 77908;77909;77910;77911;77912;77913;77914;77915;77916;77917;77918;77919 77919 12 IIGDTFVK SKTLNMTTSPEEKRKIIGDTFVKIANEVIG SPEEKRKIIGDTFVKIANEVIGEMNLKPEE K I I V K I 0 0 0 1 0 0 0 1 0 2 0 1 0 1 0 0 1 0 0 1 0 0 8 0 891.50657 P49915 P49915 339 346 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.020415 46.426 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.1587 1.0274 17.421 7 Median 1.0455 0.96473 8.8942 2 0 Median 1.1884 1.0185 1.5618 2 0 Median 1.0564 1.0538 NaN 1 0 Median 0.9821 0.82553 33.701 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73004000 34726000 38278000 32064000 15586000 16478000 15490000 7082000 8408200 24297000 11510000 12787000 1153100 548980 604080 0 0 0 0 0 0 14962 2405 15580 76698;76699;76700;76701;76702;76703;76704 77920;77921;77922;77923;77924;77925;77926;77927 77921 8 IIGGMWR VKASNPDLKLWEIGKIIGGMWRDLTDEEKQ LKLWEIGKIIGGMWRDLTDEEKQEYLNEYE K I I W R D 0 1 0 0 0 0 0 2 0 2 0 0 1 0 0 0 0 1 0 0 0 0 7 0 831.44253 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85;J3QKX6;A0A2R8YFC8;A0A2R8YEB8 Q969G3 99 105 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.0098565 83.229 By MS/MS By matching By matching By matching 4 4 2 4 1.0981 1.0388 16.828 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97013 0.99302 4.5398 4 0 Median 1.29 1.1004 12.756 4 0 Median 1.0348 1.0714 3.4794 2 0 Median 1.2403 1.0765 30.369 4 0 Median 42982000 20952000 22030000 0 0 0 0 0 0 29591000 15297000 14294000 7359800 2844200 4515600 4289400 2016600 2272800 1741700 794800 946930 14963 389 15581 76705;76706;76707;76708;76709;76710;76711;76712;76713;76714;76715;76716;76717;76718 77928;77929;77930 77929 3 IIGHFFASQTAQR PRDQTPDENEEVIVRIIGHFFASQTAQRKI VRIIGHFFASQTAQRKIREIVQQVKQQEQK R I I Q R K 2 1 0 0 0 2 0 1 1 2 0 0 0 2 0 1 1 0 0 0 0 0 13 0 1474.7681 F8W930;Q9Y6M1 F8W930 567 579 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2;3 1.7348E-07 151.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 5 7 1.0579 0.94461 25.283 23 Median 0.98572 0.92671 2.5297 2 0 Median 0.94721 0.82043 8.3659 2 0 Median 1.2354 1.2408 16.116 3 1 Median 1.1046 0.9174 11.135 4 0 Median 1.1902 1.2035 13.481 5 2 Median 1.0225 0.87863 28.689 7 1 Median 166130000 77562000 88568000 84788000 41619000 43170000 6918000 3216300 3701700 18678000 7663200 11015000 10931000 5195700 5735300 24366000 10883000 13483000 20449000 8985700 11463000 14964 1088 15582 76719;76720;76721;76722;76723;76724;76725;76726;76727;76728;76729;76730;76731;76732;76733;76734;76735;76736;76737;76738;76739;76740;76741 77931;77932;77933;77934;77935;77936;77937;77938;77939;77940;77941;77942;77943;77944;77945;77946;77947;77948;77949;77950;77951;77952;77953;77954;77955 77940 25 IIGHFYASQMAQR PRDQTPDENDQVIVKIIGHFYASQMAQRKI VKIIGHFYASQMAQRKIRDILAQVKQQHQK K I I Q R K 2 1 0 0 0 2 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 13 0 1520.7558 Q9NZI8 Q9NZI8 539 551 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 3.9508E-16 189.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 8 9 8 1.271 1.13 42.956 36 Median 1.0361 0.97679 9.6152 6 0 Median 1.3479 1.1657 5.6722 4 0 Median 1.3101 1.3209 5.4969 2 0 Median 1.1174 0.96395 69.968 7 4 Median 1.498 1.4937 20.898 9 0 Median 1.286 1.0528 11.585 8 0 Median 598840000 272740000 326100000 256130000 122890000 133240000 35713000 15216000 20497000 90790000 38804000 51986000 64669000 34469000 30200000 91950000 35096000 56854000 59579000 26260000 33319000 14965 4188 15583;15584 76742;76743;76744;76745;76746;76747;76748;76749;76750;76751;76752;76753;76754;76755;76756;76757;76758;76759;76760;76761;76762;76763;76764;76765;76766;76767;76768;76769;76770;76771;76772;76773;76774;76775;76776;76777;76778 77956;77957;77958;77959;77960;77961;77962;77963;77964;77965;77966;77967;77968;77969;77970;77971;77972;77973;77974;77975;77976;77977;77978;77979;77980;77981;77982;77983;77984;77985;77986;77987;77988;77989;77990;77991;77992;77993;77994;77995;77996;77997;77998;77999;78000;78001;78002;78003;78004 77983 1896 49 IIGIMEEVADGFK IDFLSALEGFKVMCKIIGIMEEVADGFKSK CKIIGIMEEVADGFKSKILKQVISLQTKNP K I I F K S 1 0 0 1 0 0 2 2 0 3 0 1 1 1 0 0 0 0 0 1 0 0 13 0 1420.7272 P52701;A0A494C0M1;A0A087WWJ1 P52701 871 883 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0038536 42.743 By matching By matching By MS/MS By matching 1 1 1 1 0.92074 0.96489 88.248 4 Median 0.87058 0.88418 NaN 1 0 Median 0.19292 0.18599 NaN 1 0 Median 0.97378 1.053 NaN 1 0 Median 1.4712 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6846400 3473500 3372800 764170 376620 387560 339150 271450 67698 5555900 2748200 2807700 187180 77307 109870 0 0 0 0 0 0 14966 2453 15585 76779;76780;76781;76782 78005 78005 1 IIGLDQVAGMSETALPGAFK SSDKFVSELWKDVDRIIGLDQVAGMSETAL QVAGMSETALPGAFKTRKGMFRTVGQLYKE R I I F K T 3 0 0 1 0 1 1 3 0 2 2 1 1 1 1 1 1 0 0 1 0 0 20 0 2017.0554 P35579 P35579 618 637 MYH9 Myosin-9 yes yes 2;3 4.5201E-10 89.013 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 5 3 1 2 2 0.93474 0.9205 29.106 18 Median 1.0524 1.0175 5.3043 5 0 Median 0.93474 0.82699 38.971 5 0 Plateau 0.86624 0.96548 3.8863 3 0 Median 0.87585 0.79325 NaN 1 0 Median 1.2007 1.2343 21.609 2 0 Median 0.97357 0.83265 0.9708 2 0 Median 241110000 119600000 121520000 113420000 52945000 60480000 112070000 58646000 53423000 13290000 6938700 6351000 92395 49469 42926 1843300 834510 1008800 394680 183690 210990 14967 2244 15586;15587 76783;76784;76785;76786;76787;76788;76789;76790;76791;76792;76793;76794;76795;76796;76797;76798;76799;76800 78006;78007;78008;78009;78010;78011;78012;78013;78014;78015;78016;78017;78018;78019;78020;78021;78022 78020 988 17 IIGLKPEGVPR GYSQGNPCILVKMNRIIGLKPEGVPRIDCV KMNRIIGLKPEGVPRIDCVSKNEDIPNVAV R I I P R I 0 1 0 0 0 0 1 2 0 2 1 1 0 0 2 0 0 0 0 1 0 0 11 1 1177.7183 P54709;C9JA36;H7C4L9 P54709 178 188 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2 0.00084364 93.178 By MS/MS By MS/MS 2 2 0.74025 0.75764 5.6304 4 Median 0.73742 0.76595 3.5966 2 0 Median 0.79474 0.72867 7.5679 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44100000 25275000 18825000 37875000 21946000 15928000 6225000 3328300 2896600 0 0 0 0 0 0 0 0 0 0 0 0 14968 2485 15588 76801;76802;76803;76804 78023;78024;78025;78026;78027;78028 78024 6 IIGNLLYYR LHEKFPDAGEDELLKIIGNLLYYRYMNPAI EDELLKIIGNLLYYRYMNPAIVAPDAFDII K I I Y R Y 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 0 0 0 2 0 0 0 9 0 1123.639 P46940;H0YLE8 P46940 1186 1194 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00068909 104.45 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 4 3 2 2 1.3523 1.1885 77.548 15 Median 1.2383 1.18 20.96 4 0 Median 1.3709 1.1845 13.083 4 0 Median 1.1803 1.2859 18.522 3 0 Plateau 4.792 4.3066 219.77 2 0 Median 1.9405 2.0511 37.811 2 0 Median NaN NaN NaN 0 0 Median 105150000 44730000 60425000 65400000 28932000 36469000 23503000 8816200 14687000 12381000 5851700 6529100 811690 201140 610560 3058600 929340 2129300 0 0 0 14969 2350 15589 76805;76806;76807;76808;76809;76810;76811;76812;76813;76814;76815;76816;76817;76818;76819 78029;78030;78031;78032;78033;78034;78035;78036;78037;78038;78039;78040;78041 78031 13 IIGVDINK GLAVIMGCKVAGASRIIGVDINKDKFARAK KVAGASRIIGVDINKDKFARAKEFGATECI R I I N K D 0 0 1 1 0 0 0 1 0 3 0 1 0 0 0 0 0 0 0 1 0 0 8 0 870.51747 P11766;H0YAG8 P11766 219 226 ADH5 Alcohol dehydrogenase class-3 yes no 2 0.0094683 60.76 By MS/MS By MS/MS By matching 3 4 1 1.1682 1.1138 17.484 8 Median 1.0955 1.0478 18.174 3 1 Median 1.4382 1.235 13.815 4 0 Median 1.1388 1.0939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43998000 20958000 23040000 25232000 13489000 11743000 16640000 6649900 9990400 2126200 818870 1307300 0 0 0 0 0 0 0 0 0 14970 1970 15590 76820;76821;76822;76823;76824;76825;76826;76827 78042;78043;78044;78045 78045 4 IIGVDINKDK GLAVIMGCKVAGASRIIGVDINKDKFARAK AGASRIIGVDINKDKFARAKEFGATECINP R I I D K F 0 0 1 2 0 0 0 1 0 3 0 2 0 0 0 0 0 0 0 1 0 0 10 1 1113.6394 P11766;H0YAG8 P11766 219 228 ADH5 Alcohol dehydrogenase class-3 yes no 2 0.0017372 81.972 By matching By MS/MS 1 2 1.2571 1.2372 2.7145 3 Plateau 1.2571 1.1736 NaN 1 0 Median 1.3108 1.2143 2.6472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21591000 9148300 12443000 4539200 2229600 2309600 17052000 6918700 10133000 0 0 0 0 0 0 0 0 0 0 0 0 14971 1970 15591 76828;76829;76830 78046 78046 1 IIGVYATK VLHYLNTSGASCESRIIGVYATKTDGTDAI GASCESRIIGVYATKTDGTDAIEKQLGGRI R I I T K T 1 0 0 0 0 0 0 1 0 2 0 1 0 0 0 0 1 0 1 1 0 0 8 0 863.51165 Q6PI47 Q6PI47 159 166 KCTD18 BTB/POZ domain-containing protein KCTD18 yes yes 2 0.019541 47.082 By matching By matching By MS/MS 1 1 1 1.5711 1.1516 32.642 3 Plateau 1.9842 1.9784 NaN 1 0 Median 1.244 1.1002 NaN 1 0 Median 1.1523 1.1516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26472000 10313000 16158000 15864000 5799000 10065000 8297900 3407400 4890500 2309400 1106700 1202600 0 0 0 0 0 0 0 0 0 14972 3170 15592 76831;76832;76833 78047 78047 1 IIHDFPQFYPLGIVQHD DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ HDFPQFYPLGIVQHD_______________ K I I H D - 0 0 0 2 0 2 0 1 2 3 1 0 0 2 2 0 0 0 1 1 0 0 17 0 2038.0312 P35244;B5MC59 P35244 105 121 RPA3 Replication protein A 14 kDa subunit yes no 3 2.9206E-05 58.83 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35796000 0 0 0 0 0 0 0 0 24132000 0 0 0 0 0 0 0 0 11664000 0 0 14973 2236 15593 76834;76835 78048;78049;78050 78048 3 IIHDYKDIFK QEWYKKMLDKAFAERIIHDYKDIFKQATED AFAERIIHDYKDIFKQATEDRLTSAKELPY R I I F K Q 0 0 0 2 0 0 0 0 1 3 0 2 0 1 0 0 0 0 1 0 0 0 10 1 1290.6972 Q92793;I3L466 Q92793 1515 1524 CREBBP CREB-binding protein yes no 3 0.00048491 64.82 By MS/MS 2 0.5467 0.62677 87.506 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5467 0.62677 87.506 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19938000 10875000 9062700 0 0 0 0 0 0 19938000 10875000 9062700 0 0 0 0 0 0 0 0 0 14974 3557 15594 76836;76837 78051;78052;78053 78052 3 IIHGAGYSEEDKR GTGESGKSTFIKQMRIIHGAGYSEEDKRGF MRIIHGAGYSEEDKRGFTKLVYQNIFTAMQ R I I K R G 1 1 0 1 0 0 2 2 1 2 0 1 0 0 0 1 0 0 1 0 0 0 13 1 1473.7212 P29992 P29992 61 73 GNA11 Guanine nucleotide-binding protein subunit alpha-11 yes yes 3 0.00013875 70.089 By matching By MS/MS By matching 1 1 1 1.0482 1.0456 12.865 3 Median 0.98098 1.0456 NaN 1 0 Median 1.0482 0.97813 NaN 1 0 Median 1.1004 1.2541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1603500 763530 839950 239530 127640 111890 1198000 567020 630990 165940 68870 97073 0 0 0 0 0 0 0 0 0 14975 2176 15595 76838;76839;76840 78054;78055 78055 2 IIHGQDFDQR GAGESGKSTFLKQMRIIHGQDFDQRAREEF LKQMRIIHGQDFDQRAREEFRPTIYSNVIK R I I Q R A 0 1 0 2 0 2 0 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 10 0 1227.5996 Q14344 Q14344 70 79 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 3 0.0033579 41.399 By MS/MS By MS/MS 1 1 1.2633 1.1819 17.808 2 Median 1.018 1.042 NaN 1 0 Median 1.5676 1.3405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797100 1211500 1585600 933970 479730 454250 1863100 731730 1131400 0 0 0 0 0 0 0 0 0 0 0 0 14976 2875 15596 76841;76842 78056;78057 78057 2 IIHGSESMDSGISLDNSYK ENSVDSKSIKNLEPKIIHGSESMDSGISLD SESMDSGISLDNSYKMDYPEMGLCIIINNK K I I Y K M 0 0 1 2 0 0 1 2 1 3 1 1 1 0 0 5 0 0 1 0 0 0 19 0 2051.947 C9JXR7;A8MVM1;P42574 C9JXR7 20 38 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 3 2.3468E-08 77.468 By MS/MS By MS/MS By matching 1 2 1 5.7197 6.25 121.62 4 Linear 1.2247 1.136 NaN 1 0 Median 1.024 0.87888 3.4353 2 1 Median 9.2703 10.766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45723000 11530000 34194000 9876700 5396700 4480000 6820500 2882000 3938500 29026000 3251000 25775000 0 0 0 0 0 0 0 0 0 14977 545 15597 76843;76844;76845;76846 78058;78059;78060 78059 3 IIHLVHR DTFPPISYLNAISWRIIHLVHRFNAHHGDT YLNAISWRIIHLVHRFNAHHGDTKVAYTFD R I I H R F 0 1 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 0 1 0 0 7 0 886.55011 P53602 P53602 284 290 MVD Diphosphomevalonate decarboxylase yes yes 2 0.037411 46.351 By MS/MS By matching 1 1 1.0036 0.94534 6.1477 2 Median NaN NaN NaN 0 0 Median 1.1474 0.98734 NaN 1 0 Median 0.87782 0.90513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1212000 503640 708390 0 0 0 1070200 432820 637360 141850 70818 71031 0 0 0 0 0 0 0 0 0 14978 2470 15598 76847;76848 78061 78061 1 IIHTDIKPENILLSVNEQYIR QQVLQGLDYLHTKCRIIHTDIKPENILLSV KPENILLSVNEQYIRRLAAEATEWQRSGAP R I I I R R 0 1 2 1 0 1 2 0 1 5 2 1 0 0 1 1 1 0 1 1 0 0 21 1 2507.3748 H3BLV9;Q96SB4 H3BLV9 225 245 SRPK1 SRSF protein kinase 1 yes no 3 0.030982 13.592 By MS/MS 1 0.66967 0.67176 NaN 1 Median NaN NaN NaN 0 0 Median 0.66967 0.67176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1111500 637940 473530 0 0 0 1111500 637940 473530 0 0 0 0 0 0 0 0 0 0 0 0 14979 1207 15599 76849 78062 78062 1 IIHTSVWAGQK AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ LFLKIIHTSVWAGQKRLGQLAKWKTAEEVA K I I Q K R 1 0 0 0 0 1 0 1 1 2 0 1 0 0 0 1 1 1 0 1 0 0 11 0 1238.6772 Q6P2Q9 Q6P2Q9 1821 1831 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 2.5694E-05 123.72 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 5 2 3 1.3048 1.2366 58.67 17 Median 1.3691 1.3167 6.7752 2 0 Median 1.1465 1.0145 3.4921 3 1 Median 1.1117 1.2366 10.688 3 2 Median 1.4055 1.2553 95.412 5 0 Median 0.80917 0.8577 71.855 2 0 Median 1.5427 1.3214 25.102 2 1 Median 139130000 59745000 79385000 9229800 3920600 5309300 26473000 11311000 15161000 39706000 18956000 20751000 22527000 7530000 14997000 23809000 11767000 12042000 17385000 6260600 11124000 14980 3157 15600 76850;76851;76852;76853;76854;76855;76856;76857;76858;76859;76860;76861;76862;76863;76864;76865;76866;76867 78063;78064;78065;78066;78067;78068;78069;78070;78071;78072;78073;78074;78075;78076;78077;78078;78079;78080;78081 78064 19 IIIAEVVNK KNPKYKKLKDAIEEKIIIAEVVNKINRANG DAIEEKIIIAEVVNKINRANGKSTSRIFLL K I I N K I 1 0 1 0 0 0 1 0 0 3 0 1 0 0 0 0 0 0 0 2 0 0 9 0 997.61718 E9PDF6;O43795;H7C2Y7 E9PDF6 958 966 MYO1B Unconventional myosin-Ib yes no 2 0.01317 45.68 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1 1.1526 1.1239 13.004 7 Median 1.1526 1.1239 NaN 1 0 Median 1.2934 1.1263 NaN 1 0 Median 0.78809 0.85084 NaN 1 0 Median 1.24 1.0391 NaN 1 0 Median 1.0831 1.1308 2.6788 2 0 Median 1.5618 1.3052 NaN 1 0 Median 20780000 9637200 11143000 5144300 2176200 2968100 2922000 1337200 1584800 5907300 3105200 2802100 1073200 538220 534970 5293500 2321400 2972100 440150 159060 281090 14981 914 15601 76868;76869;76870;76871;76872;76873;76874 78082;78083;78084 78082 3 IIIDKEYYYTK VMNSFELLSHTVEEKIIIDKEYYYTKEEQF VEEKIIIDKEYYYTKEEQFKQVFKELEFLG K I I T K E 0 0 0 1 0 0 1 0 0 3 0 2 0 0 0 0 1 0 3 0 0 0 11 1 1447.7599 Q7L5N1;E7EM64 Q7L5N1 98 108 COPS6 COP9 signalosome complex subunit 6 yes no 2;3 0.00045037 74.162 By MS/MS By MS/MS By MS/MS 1 1 2 1.3277 1.3251 13.548 4 Median 1.0938 1.064 NaN 1 0 Median 1.4831 1.336 NaN 1 0 Median 1.3277 1.3883 7.7463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29759000 13112000 16647000 10093000 4731000 5362200 4303300 1748100 2555200 15362000 6633100 8729100 0 0 0 0 0 0 0 0 0 14982 855 15602 76875;76876;76877;76878 78085;78086;78087;78088;78089 78085 5 IIIDKEYYYTKEEQFK VMNSFELLSHTVEEKIIIDKEYYYTKEEQF IIDKEYYYTKEEQFKQVFKELEFLGWYTTG K I I F K Q 0 0 0 1 0 1 3 0 0 3 0 3 0 1 0 0 1 0 3 0 0 0 16 2 2109.067 Q7L5N1;E7EM64 Q7L5N1 98 113 COPS6 COP9 signalosome complex subunit 6 yes no 3 0.0061156 25.957 By matching By MS/MS 1 1 1.1731 1.2181 10.099 2 Median 1.0857 1.1341 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2675 1.3082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10999000 4954200 6044500 6461000 2997300 3463700 0 0 0 4537700 1956800 2580800 0 0 0 0 0 0 0 0 0 14983 855 15603 76879;76880 78090 78090 1 IIIELHK FLETENEENVLICLRIIIELHKQFRPPITQ ENVLICLRIIIELHKQFRPPITQEIHHFLD R I I H K Q 0 0 0 0 0 0 1 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0 7 0 864.54329 F2Z2U4;Q9Y4A5 F2Z2U4 135 141 TRRAP Transformation/transcription domain-associated protein yes no 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.0178 1.0323 23.092 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81105 0.8768 NaN 1 0 Median 1.2772 1.2154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5141900 2746600 2395200 0 0 0 0 0 0 3826000 2191000 1634900 1315900 555610 760300 0 0 0 0 0 0 14984 991 15604 76881;76882 78091;78092 78091 2 IIIENKPK LNNQARFILEKIDGKIIIENKPKKELIKVL LEKIDGKIIIENKPKKELIKVLIQRGYDSD K I I P K K 0 0 1 0 0 0 1 0 0 3 0 2 0 0 1 0 0 0 0 0 0 0 8 1 953.59097 P11388 P11388 1063 1070 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.027791 73.616 By matching By MS/MS By MS/MS 1 1 1 0.96663 1.0409 1.7719 3 Median NaN NaN NaN 0 0 Median 1.072 1.0494 NaN 1 0 Median 0.88394 1.0144 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96663 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median 11169000 5690600 5478700 0 0 0 580680 280070 300610 2226300 1160200 1066200 0 0 0 8362300 4250400 4111900 0 0 0 14985 1963 15605 76883;76884;76885 78093;78094 78094 2 IIIISSR PNCVAEVVTFDKEDKIIIISSRRIPKGEEL VTFDKEDKIIIISSRRIPKGEELTYDYQFD K I I S R R 0 1 0 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 0 7 0 800.51199 O14686;H0YEF2 O14686 5494 5500 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 0.014908 73.039 By MS/MS 1 1.0999 1.2209 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0999 1.2209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2333600 984550 1349000 0 0 0 0 0 0 2333600 984550 1349000 0 0 0 0 0 0 0 0 0 14986 1490 15606 76886 78095 78095 1 IIILDEADSMTDGAQQALR MFAQQKVTLPKGRHKIIILDEADSMTDGAQ DEADSMTDGAQQALRRTMEIYSKTTRFALA K I I L R R 3 1 0 3 0 2 1 1 0 3 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2059.0256 P35250;A0A087WVY3 P35250 137 155 RFC2 Replication factor C subunit 2 yes no 2;3 1.1187E-07 62.924 By MS/MS By MS/MS By matching 2 4 2 1.1245 1.0503 12.006 8 Median NaN NaN NaN 0 0 Median 1.1396 0.98315 8.6205 2 0 Median 1.0623 1.09 7.842 4 3 Median 1.3704 1.184 20.025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13266000 6157200 7109200 0 0 0 2451100 1149800 1301300 9098400 4198800 4899500 1716900 808590 908310 0 0 0 0 0 0 14987 2238 15607 76887;76888;76889;76890;76891;76892;76893;76894 78096;78097;78098;78099;78100;78101;78102;78103 78097 8 IIINYSLEQPSQLQVVPQNLKK SAISLPLVDQDGTTKIIINYSLEQPSQLQV EQPSQLQVVPQNLKKENPVATNSCKSEKLP K I I K K E 0 0 2 0 0 4 1 0 0 3 3 2 0 0 2 2 0 0 1 2 0 0 22 1 2551.4374 P37275 P37275 473 494 ZEB1 Zinc finger E-box-binding homeobox 1 yes yes 3 3.6228E-05 36.856 By MS/MS 1 0.70118 0.80444 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70118 0.80444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4823600 2686800 2136800 0 0 0 0 0 0 4823600 2686800 2136800 0 0 0 0 0 0 0 0 0 14988 2268 15608 76895 78104;78105 78105 2 IIIPEIQK FDGIQPKMFGMVLEKIIIPEIQKVSGNVEK FGMVLEKIIIPEIQKVSGNVEKKICAVGIT K I I Q K V 0 0 0 0 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 0 0 0 8 0 952.59572 P55060 P55060 825 832 CSE1L Exportin-2 yes yes 2 0.00058896 100.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.1811 0.96638 21.524 7 Median 0.85991 0.80423 11.169 2 1 Median 1.5393 1.2868 6.5464 2 0 Median NaN NaN NaN 0 0 Median 1.3296 1.0551 NaN 1 0 Median 0.78623 0.82584 NaN 1 0 Median 1.1811 0.96638 NaN 1 0 Median 2443000000 1117800000 1325200000 57602000 29925000 27677000 102400000 39176000 63224000 0 0 0 60919000 26465000 34454000 226620000 124730000 101890000 1995400000 897460000 1098000000 14989 2493 15609 76896;76897;76898;76899;76900;76901;76902 78106;78107;78108;78109;78110;78111;78112;78113 78107 8 IIIPPFLAYGEK MDQGLLGMCPGERRKIIIPPFLAYGEKGYG RRKIIIPPFLAYGEKGYGTVIPPQASLVFH K I I E K G 1 0 0 0 0 0 1 1 0 3 1 1 0 1 2 0 0 0 1 0 0 0 12 0 1359.7802 Q96AY3 Q96AY3 229 240 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes yes 2 0.00072414 61.65 By MS/MS By matching By MS/MS 1 1 2 0.76645 0.81465 61.019 3 Median 0.63649 0.58057 NaN 1 0 Median 2.1472 1.8983 NaN 1 0 Median 0.76645 0.81465 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14372000 7787100 6585300 9494700 5686400 3808300 2132800 638730 1494100 2744800 1461900 1282900 0 0 0 0 0 0 0 0 0 14990 3603 15610 76903;76904;76905;76906 78114;78115;78116;78117;78118 78116 5 IIIQESALDYR YADQRLSSDCEDQIRIIIQESALDYRLDPQ DQIRIIIQESALDYRLDPQLQLHCSDEISS R I I Y R L 1 1 0 1 0 1 1 0 0 3 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1319.7085 Q92896 Q92896 990 1000 GLG1 Golgi apparatus protein 1 yes yes 2 1.7293E-06 163.32 By MS/MS By MS/MS By MS/MS 1 1 1 0.88412 0.93685 12.99 3 Median 0.88412 0.85314 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85197 0.93685 NaN 1 0 Median 1.2942 1.1028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19488000 9581900 9906000 7933500 3675300 4258200 0 0 0 10132000 5169000 4962800 1422600 737580 685010 0 0 0 0 0 0 14991 3563 15611 76907;76908;76909 78119;78120;78121;78122 78120 4 IIIQLTLMDR I I D R 0 1 0 1 0 1 0 0 0 3 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1214.7057 REV__A0A2R8Y2F6 yes no 2 0.062766 42.109 By MS/MS 1 0.048807 0.04777 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.048807 0.04777 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2259000 2144900 114120 0 0 0 0 0 0 2259000 2144900 114120 0 0 0 0 0 0 0 0 0 + 14992 4512 15612 76910 78123 78123 2002 1 IIITEDGEFK SKVYMHLPQTDNKKKIIITEDGEFKALQEW DNKKKIIITEDGEFKALQEWILETDGVSLM K I I F K A 0 0 0 1 0 0 2 1 0 3 0 1 0 1 0 0 1 0 0 0 0 0 10 0 1163.6074 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1320 1329 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0014621 65.305 By MS/MS By MS/MS By MS/MS 1 1 1 1.1346 1.032 3.4649 3 Median NaN NaN NaN 0 0 Median 1.1627 1.032 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1346 1.0321 NaN 1 0 Median 0.92859 0.97197 NaN 1 0 Median NaN NaN NaN 0 0 Median 15417000 7777900 7639500 0 0 0 3807400 1914700 1892800 0 0 0 1296900 581340 715530 10313000 5281900 5031100 0 0 0 14993 486 15613 76911;76912;76913 78124;78125;78126;78127;78128 78124 5 IIITVVEEQEQK RQFRTGRITVEKIIKIIITVVEEQEQKGRL IIKIIITVVEEQEQKGRLCFEGLRSLVPAA K I I Q K G 0 0 0 0 0 2 3 0 0 3 0 1 0 0 0 0 1 0 0 2 0 0 12 0 1427.7872 Q15149;H0YDN1 Q15149 3095 3106 PLEC Plectin yes no 2 2.4885E-21 155.42 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.4172 1.3313 35.483 6 Median 0.96578 0.93957 50.42 2 1 Median 1.5502 1.3618 4.3441 2 0 Median 1.1953 1.2868 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8514 1.9457 NaN 1 1 Median NaN NaN NaN 0 0 Median 44161000 17635000 26526000 25737000 10377000 15360000 9857900 3673100 6184800 4816500 2313300 2503200 0 0 0 3748800 1271300 2477500 0 0 0 14994 2933 15614 76914;76915;76916;76917;76918;76919 78129;78130;78131 78129 3 IIITVVEEQEQKGR RQFRTGRITVEKIIKIIITVVEEQEQKGRL KIIITVVEEQEQKGRLCFEGLRSLVPAAEL K I I G R L 0 1 0 0 0 2 3 1 0 3 0 1 0 0 0 0 1 0 0 2 0 0 14 1 1640.9097 Q15149;H0YDN1 Q15149 3095 3108 PLEC Plectin yes no 3 6.9019E-06 97.551 By MS/MS 1 0.1644 0.17187 NaN 1 Median 0.1644 0.17187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20296000 17141000 3154900 20296000 17141000 3154900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14995 2933 15615 76920 78132 78132 1 IIIWNLR LLAELDAIIGKKGTRIIIWNLRSYKNATEF IIGKKGTRIIIWNLRSYKNATEFDFEKDKY R I I L R S 0 1 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 0 7 0 926.57017 Q14149 Q14149 196 202 MORC3 MORC family CW-type zinc finger protein 3 yes yes 2 0.064634 36.587 By matching By MS/MS By matching 1 2 1 1.0147 1.039 12.766 4 Median NaN NaN NaN 0 0 Median 0.97362 0.85798 NaN 1 0 Median 0.99339 1.0599 10.455 2 0 Median 1.2315 1.0966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1884900 886630 998230 0 0 0 229940 95520 134420 1539100 739770 799300 115850 51338 64508 0 0 0 0 0 0 14996 2858 15616 76921;76922;76923;76924 78133 78133 1 IIKDFMIQGGDPTGTGR ELARRGYYNGTKFHRIIKDFMIQGGDPTGT KDFMIQGGDPTGTGRGGASIYGKQFEDELH R I I G R G 0 1 0 2 0 1 0 4 0 3 0 1 1 1 1 0 2 0 0 0 0 0 17 1 1804.9142 Q9Y3C6 Q9Y3C6 56 72 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 2;3 6.7039E-13 113.77 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 6 1 4 1 1.0379 1.0086 19.52 18 Median 0.96168 0.93929 8.1495 3 0 Median 1.1408 1.0066 0.97465 3 0 Median 0.93491 0.97957 29.417 6 1 Median 0.97468 0.8628 NaN 1 0 Median 0.97613 1.1042 16.86 4 0 Median 1.2073 0.96532 NaN 1 0 Median 255320000 127110000 128210000 109490000 55842000 53645000 17044000 7998100 9045600 58388000 28048000 30340000 2976600 1744300 1232300 64030000 32081000 31949000 3395000 1395800 1999200 14997 4418 15617;15618 76925;76926;76927;76928;76929;76930;76931;76932;76933;76934;76935;76936;76937;76938;76939;76940;76941;76942 78134;78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153;78154 78140 1973 21 IIKDGEQHEDLNEVAK IVLWNIFNRMPIARKIIKDGEQHEDLNEVA IKDGEQHEDLNEVAKLFNIHED________ K I I A K L 1 0 1 2 0 1 3 1 1 2 1 2 0 0 0 0 0 0 0 1 0 0 16 1 1836.9218 O95831;E9PMA0 O95831 591 606 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 0.00016916 45.614 By matching By MS/MS By matching 1 1 1 1.2476 1.152 22.99 3 Median 0.96379 0.90647 NaN 1 0 Median 1.5341 1.4354 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2476 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14369000 6433800 7935700 8653500 4232100 4421400 4962900 1999900 2963000 0 0 0 753010 201740 551270 0 0 0 0 0 0 14998 1797 15619 76943;76944;76945 78155 78155 1 IIKDILK FYVEDLKARYHDEKKIIKDILKDKGFVVEV ARYHDEKKIIKDILKDKGFVVEVNTTFEDF K I I L K D 0 0 0 1 0 0 0 0 0 3 1 2 0 0 0 0 0 0 0 0 0 0 7 1 841.56369 O75400;A0A3F2YNY6;F8VU11;Q6NWY9 O75400 678 684 PRPF40A;PRPF40B Pre-mRNA-processing factor 40 homolog A;Pre-mRNA-processing factor 40 homolog B yes no 2 0.048014 82.671 By MS/MS By matching By matching By matching 2 1 1 2 1.1257 1.1969 5.7499 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0253 1.1749 4.5184 2 0 Median 1.2694 1.2092 NaN 1 0 Median 1.0593 1.1847 NaN 1 0 Median 1.3065 1.172 11.727 2 0 Median 13806000 6483500 7322800 0 0 0 0 0 0 6642600 3203800 3438900 1124900 504630 620220 1752300 812870 939440 4286500 1962300 2324200 14999 1670 15620 76946;76947;76948;76949;76950;76951 78156 78156 1 IIKNPMDMGTIK QPVDAIKLNLPDYHKIIKNPMDMGTIKKRL YHKIIKNPMDMGTIKKRLENNYYWSASECM K I I I K K 0 0 1 1 0 0 0 1 0 3 0 2 2 0 1 0 1 0 0 0 0 0 12 1 1359.7254 Q15059 Q15059 76 87 BRD3 Bromodomain-containing protein 3 yes yes 3 0.055087 26.969 By MS/MS 1 0.86556 0.98986 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86556 0.98986 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3807700 1974300 1833400 0 0 0 0 0 0 3807700 1974300 1833400 0 0 0 0 0 0 0 0 0 15000 2923 15621 76952 78157 78157 1 IIKPLQYQSTVASGTVAR LNMYRQKERRNSRGKIIKPLQYQSTVASGT PLQYQSTVASGTVARVEPNIKWFGNTRVIK K I I A R V 2 1 0 0 0 2 0 1 0 2 1 1 0 0 1 2 2 0 1 2 0 0 18 1 1931.084 Q13823 Q13823 56 73 GNL2 Nucleolar GTP-binding protein 2 yes yes 2;3 6.0815E-11 108.17 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 6 5 0.80876 0.84443 17.173 14 Median 0.89695 0.93283 14.81 2 0 Median NaN NaN NaN 0 0 Median 0.74847 0.8488 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70815 0.75921 8.2346 6 0 Median 1.1306 1.0247 16.546 5 0 Median 122800000 68220000 54584000 10684000 5681000 5003200 0 0 0 8711700 4546600 4165100 0 0 0 97686000 55440000 42246000 5722700 2552800 3169900 15001 2839 15622 76953;76954;76955;76956;76957;76958;76959;76960;76961;76962;76963;76964;76965;76966 78158;78159;78160;78161;78162;78163;78164;78165;78166;78167;78168;78169;78170;78171;78172;78173;78174 78166 17 IIKPVLTQESATYIAEEYSR MVSAAFMKKYIHVAKIIKPVLTQESATYIA LTQESATYIAEEYSRLRSQDSMSSDTARTS K I I S R L 2 1 0 0 0 1 3 0 0 3 1 1 0 0 1 2 2 0 2 1 0 0 20 1 2310.2107 P25205;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 577 596 MCM3 DNA replication licensing factor MCM3 yes no 2;3 8.4756E-09 75.55 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 2 1 1 0.82158 0.90823 25.981 11 Median 0.79947 0.84522 38.528 4 1 Median 0.96915 0.96738 23.297 3 0 Median 0.76215 0.85199 9.0403 2 0 Median 1.0856 1.0344 NaN 1 0 Median 0.77438 0.85155 NaN 1 1 Median NaN NaN NaN 0 0 Median 112700000 63299000 49398000 53714000 29914000 23800000 3485900 1752800 1733100 49367000 28143000 21224000 1263900 554590 709350 4866500 2935100 1931400 0 0 0 15002 2129 15623 76967;76968;76969;76970;76971;76972;76973;76974;76975;76976;76977 78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185;78186 78177 12 IILAAFR LSDILQESVKEKVTRIILAAFRNFLEKSTE SVKEKVTRIILAAFRNFLEKSTERETRQEY R I I F R N 2 1 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 802.50651 Q9UI12;G3V126 Q9UI12 284 290 ATP6V1H V-type proton ATPase subunit H yes no 2 0.023603 56.51 By MS/MS By matching By matching By matching By matching 1 2 1 2 1 1.3606 1.2684 16.151 7 Median 1.0894 1.087 NaN 1 0 Median 1.5596 1.3661 13.665 2 0 Median 1.2922 1.2684 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2041 1.2995 11.26 2 0 Median 1.9865 1.7646 NaN 1 0 Median 5317600 2449300 2868300 2278900 1014800 1264100 949880 394120 555760 855040 416480 438560 0 0 0 1044500 555730 488810 189290 68248 121040 15003 4287 15624 76978;76979;76980;76981;76982;76983;76984 78187 78187 1 IILDLISESPIK VLIGGKPDRVVECIKIILDLISESPIKGRA CIKIILDLISESPIKGRAQPYDPNFYDETY K I I I K G 0 0 0 1 0 0 1 0 0 4 2 1 0 0 1 2 0 0 0 0 0 0 12 0 1339.7963 P61978;Q5T6W2 P61978 208 219 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 9.7627E-41 221.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 9 10 7 7 10 1.0916 0.94317 19.902 48 Median 1.0443 0.97555 7.4421 5 0 Median 1.1525 0.97844 39.118 9 0 Median 0.91472 0.90066 15.803 10 1 Median 1.1532 0.98205 6.6923 7 0 Median 0.87888 0.89118 17.573 7 0 Median 1.0801 0.87188 6.3972 10 0 Median 4253900000 2127900000 2126000000 75757000 36013000 39744000 179780000 80729000 99055000 2120200000 1118900000 1001300000 833390000 381720000 451670000 249710000 133540000 116170000 795060000 377020000 418040000 15004 2565;3093 15625 76985;76986;76987;76988;76989;76990;76991;76992;76993;76994;76995;76996;76997;76998;76999;77000;77001;77002;77003;77004;77005;77006;77007;77008;77009;77010;77011;77012;77013;77014;77015;77016;77017;77018;77019;77020;77021;77022;77023;77024;77025;77026;77027;77028;77029;77030;77031;77032 78188;78189;78190;78191;78192;78193;78194;78195;78196;78197;78198;78199;78200;78201;78202;78203;78204;78205;78206;78207;78208;78209;78210;78211;78212;78213;78214;78215;78216;78217;78218;78219;78220;78221;78222;78223;78224;78225;78226;78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242;78243;78244;78245;78246;78247;78248;78249;78250;78251;78252;78253;78254;78255;78256;78257;78258;78259;78260;78261;78262 78243 74 IILDLISESPIKGR VLIGGKPDRVVECIKIILDLISESPIKGRA KIILDLISESPIKGRAQPYDPNFYDETYDY K I I G R A 0 1 0 1 0 0 1 1 0 4 2 1 0 0 1 2 0 0 0 0 0 0 14 1 1552.9188 P61978;Q5T6W2 P61978 208 221 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 0.0019581 70.977 By matching By MS/MS By matching 1 3 3 1.0462 1.0296 22.174 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87531 0.97524 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0462 1.0725 19.485 3 0 Median 1.1161 1.0296 30.332 3 0 Median 17865000 8705200 9159600 0 0 0 0 0 0 2391600 1102800 1288800 0 0 0 14208000 7020400 7187500 1265300 582010 683280 15005 2565;3093 15626 77033;77034;77035;77036;77037;77038;77039 78263;78264;78265 78265 3 IILEAALQAAK AASREDTICLLQNEKIILEAALQAAKSGKE QNEKIILEAALQAAKSGKEELDRGARRLEE K I I A K S 4 0 0 0 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1139.6914 Q08378 Q08378 776 786 GOLGA3 Golgin subfamily A member 3 yes yes 2 0.0011576 60.59 By MS/MS 1 1.0672 1.0274 NaN 1 Median 1.0672 1.0274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6490300 3179400 3310900 6490300 3179400 3310900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15006 2738 15627 77040 78266;78267 78266 2 IILEAEKMDGAASQGK SSAKENQTAVDVFRRIILEAEKMDGAASQG ILEAEKMDGAASQGKSSCSVM_________ R I I G K S 3 0 0 1 0 1 2 2 0 2 1 2 1 0 0 1 0 0 0 0 0 0 16 1 1659.8502 Q15382;C9J931 Q15382 163 178 RHEB GTP-binding protein Rheb yes no 2 0.00033915 76.522 By MS/MS 1 0.98362 0.98557 NaN 1 Median 0.98362 0.98557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4409400 2195600 2213800 4409400 2195600 2213800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15007 2943 15628 77041 78268 78268 1 IILEHVSTWR FPENFHQNLKNLLTKIILEHVSTWRTEAQA NLLTKIILEHVSTWRTEAQANQISLPRLVD K I I W R T 0 1 0 0 0 0 1 0 1 2 1 0 0 0 0 1 1 1 0 1 0 0 10 0 1252.6928 Q9P000 Q9P000 101 110 COMMD9 COMM domain-containing protein 9 yes yes 2;3 0.0010092 88.948 By MS/MS By MS/MS 3 3 1.2953 1.172 37.864 6 Median 1.2741 1.2448 42.236 3 1 Median 1.3169 1.1034 32.028 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23351000 8976400 14374000 19450000 6886100 12564000 3900200 2090300 1809900 0 0 0 0 0 0 0 0 0 0 0 0 15008 4195 15629 77042;77043;77044;77045;77046;77047 78269;78270;78271;78272;78273 78271 5 IILEIDNAR ELRIKILEATTDNNRIILEIDNARLAADDF TTDNNRIILEIDNARLAADDFRLKYENELT R I I A R L 1 1 1 1 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1055.5975 CON__P08730-1 CON__P08730-1 168 176 yes yes 2 0.046568 31.934 By MS/MS 1 1.3551 1.133 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3551 1.133 NaN 1 0 Median 1152700 517850 634850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1152700 517850 634850 + 15009 753 15630 77048 78274 78274 1 IILEPMDLK FMVKPSKKDYPDYYKIILEPMDLKIIEHNI YPDYYKIILEPMDLKIIEHNIRNDKYAGEE K I I L K I 0 0 0 1 0 0 1 0 0 2 2 1 1 0 1 0 0 0 0 0 0 0 9 0 1070.6046 Q86U86;E7EVG2;H0Y5B5 Q86U86 561 569 PBRM1 Protein polybromo-1 yes no 2 0.0040114 61.999 By matching By MS/MS By matching By MS/MS By matching 1 4 2 2 2 0.86719 0.85788 15.91 11 Median NaN NaN NaN 0 0 Median 1.0308 0.9007 NaN 1 0 Median 0.73948 0.81068 6.3133 4 0 Median 1.2017 1.0765 3.0619 2 0 Median 0.88525 0.92027 31.243 2 0 Median 0.98667 0.84478 16.096 2 0 Median 35813000 19990000 15823000 0 0 0 317340 149450 167890 29922000 16876000 13046000 1168300 516760 651540 4059800 2276900 1782800 346320 171370 174950 15010 3273 15631;15632 77049;77050;77051;77052;77053;77054;77055;77056;77057;77058;77059 78275;78276;78277;78278 78277 1696 4 IILHNTMESLLER ADPMTKVQAELDETKIILHNTMESLLERGE TKIILHNTMESLLERGEKLDDLVSKSEVLG K I I E R G 0 1 1 0 0 0 2 0 1 2 3 0 1 0 0 1 1 0 0 0 0 0 13 0 1567.8392 O15498 O15498 151 163 YKT6 Synaptobrevin homolog YKT6 yes yes 2;3 8.6268E-05 77.185 By MS/MS By matching By matching 3 2 2 1.201 1.0507 10.774 7 Median 1.1139 1.0507 15.312 3 0 Median 1.2983 1.1087 1.8159 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1807 0.95749 2.8743 2 0 Median 33927000 16005000 17922000 29298000 14050000 15248000 716720 332180 384540 0 0 0 0 0 0 0 0 0 3912100 1622600 2289500 15011 1550 15633 77060;77061;77062;77063;77064;77065;77066 78279;78280;78281;78282 78282 4 IILLAEGR IKPQVDRYRLKNGRRIILLAEGRLVNLGCA RLKNGRRIILLAEGRLVNLGCAMGHPSFVM R I I G R L 1 1 0 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 883.5491 P23526 P23526 336 343 AHCY Adenosylhomocysteinase yes yes 2 8.2111E-05 116.3 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 1 2 1.3625 1.2244 14.16 13 Median 1.2869 1.2411 10.02 4 0 Median 1.499 1.3073 11.316 3 0 Median 1.154 1.1382 14.992 3 1 Median NaN NaN NaN 0 0 Median 1.7105 1.7422 NaN 1 0 Median 1.4099 1.1789 4.7991 2 0 Median 140590000 59157000 81430000 89063000 37509000 51554000 20058000 7880700 12178000 24653000 10934000 13720000 0 0 0 1884900 750660 1134300 4927300 2083000 2844200 15012 2116 15634 77067;77068;77069;77070;77071;77072;77073;77074;77075;77076;77077;77078;77079 78283;78284;78285;78286;78287;78288;78289;78290;78291;78292 78287 10 IILLFDAHK DFAAVLEWFAERVDRIILLFDAHKLDISDE AERVDRIILLFDAHKLDISDEFSEVIKALK R I I H K L 1 0 0 1 0 0 0 0 1 2 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1068.6332 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8;Q9H223 A0A024R571 199 207 EHD1;EHD4 EH domain-containing protein 1;EH domain-containing protein 4 no no 2 0.012866 60.59 By MS/MS 1 1.2885 1.3222 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2885 1.3222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2990200 1228900 1761300 0 0 0 0 0 0 2990200 1228900 1761300 0 0 0 0 0 0 0 0 0 15013 5;3939 15635 77080 78293 78293 1 IILLKPIIK CIETLRKALSEFGSKIILLKPIIKVLPKLF SEFGSKIILLKPIIKVLPKLFESREKAVRD K I I I K V 0 0 0 0 0 0 0 0 0 4 2 2 0 0 1 0 0 0 0 0 0 0 9 1 1049.7576 Q14008 Q14008 159 167 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.027088 91.041 By MS/MS By MS/MS 2 3 0.77881 0.89648 32.624 3 Median 0.69707 0.67944 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.93416 1.0802 26.37 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46323000 23009000 23313000 7621300 4343800 3277500 0 0 0 38701000 18665000 20036000 0 0 0 0 0 0 0 0 0 15014 2850 15636 77081;77082;77083;77084;77085 78294;78295;78296;78297;78298 78297 5 IILPEGAK DHVFDEQVIDSLTVKIILPEGAKNIEIDSP IDSLTVKIILPEGAKNIEIDSPYEISRAPD K I I A K N 1 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 8 0 839.51165 P04843;B7Z4L4 P04843 372 379 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.003446 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1.0777 0.98964 25.914 7 Median 0.87368 0.81427 NaN 1 1 Median 1.0777 0.89588 NaN 1 1 Median 0.98533 0.98964 NaN 1 0 Median 1.2312 1.049 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3159 1.1139 36.736 3 0 Median 119260000 52736000 66519000 26986000 12742000 14244000 46242000 20627000 25614000 16708000 7932800 8775100 2744700 1297500 1447200 0 0 0 26575000 10136000 16438000 15015 1853 15637 77086;77087;77088;77089;77090;77091;77092 78299;78300;78301;78302;78303 78299 5 IILPPEK FMPVMFSLTWDMACRIILPPEKELAMPGED LTWDMACRIILPPEKELAMPGEDLKFNLIL R I I E K E 0 0 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 7 0 808.50584 P49411 P49411 389 395 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.047302 41.502 By MS/MS 1 0.91598 0.78858 NaN 1 Median NaN NaN NaN 0 0 Median 0.91598 0.78858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1763300 887840 875410 0 0 0 1763300 887840 875410 0 0 0 0 0 0 0 0 0 0 0 0 15016 2382 15638 77093 78304 78304 1 IILQLNR FLTGHGRLSEQQVDRIILQLNRYYPQILTN LSEQQVDRIILQLNRYYPQILTNKEAEKFR R I I N R Y 0 1 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 868.54944 Q96LW7 Q96LW7 31 37 C9orf89 Bcl10-interacting CARD protein yes yes 2 0.023188 72.021 By MS/MS 1 0.37981 0.37385 NaN 1 Median 0.37981 0.37385 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6101100 4008500 2092600 6101100 4008500 2092600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15017 3702 15639 77094 78305 78305 1 IILSDEGK FQEALAIYPPCGRRKIILSDEGKMYGRNEL PPCGRRKIILSDEGKMYGRNELIARYIKLR K I I G K M 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 873.48075 H0YE88;P28347;H0YEJ9;H0YGS2;A0A0A0MRF3;Q53GI4;A0A1X7SBS4;Q15561;Q99594;Q15562;H0Y7B0;B5MCM0;H0YCZ6 H0YE88 58 65 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 2 0.012155 55.531 By MS/MS By matching 1 1 1.2983 1.2186 12.594 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3481 1.3321 NaN 1 0 Median 1.2504 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5853600 2684500 3169100 0 0 0 0 0 0 3971400 1802500 2168900 1882200 881930 1000300 0 0 0 0 0 0 15018 1178 15640 77095;77096 78306 78306 1 IILTARPFR DENSVELTMAEGPYKIILTARPFRLDLLED AEGPYKIILTARPFRLDLLEDRSLLLSVNA K I I F R L 1 2 0 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 9 1 1085.6709 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 149 157 GANAB Neutral alpha-glucosidase AB no no 2 0.023295 59.205 By MS/MS By matching By matching 2 2 1 0.99785 1.0444 36.833 5 Median 0.9685 1.0337 1.4555 2 0 Median 1.084 1.0586 32.318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4241 2.1914 NaN 1 0 Median 102970000 52423000 50549000 99155000 50988000 48168000 2725400 1111600 1613800 0 0 0 0 0 0 0 0 0 1091100 323690 767410 15019 2896;951 15641 77097;77098;77099;77100;77101 78307 78307 1 IILTEQANEK GLSEAAGQTAQMLERIILTEQANEKMNAKL QMLERIILTEQANEKMNAKLEELRQHAACK R I I E K M 1 0 1 0 0 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1157.6292 O95239 O95239 420 429 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 5.2728E-31 172.21 By MS/MS By MS/MS By MS/MS 2 3 3 1.1702 1.0145 6.4286 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0545 1.1254 NaN 1 1 Median 1.1702 1.0171 3.0813 3 1 Median NaN NaN NaN 0 0 Median 1.1763 1.0079 6.1557 3 0 Median 37380000 16836000 20544000 0 0 0 0 0 0 15303000 6956600 8346300 12119000 5520100 6599000 0 0 0 9957900 4358900 5599000 15020 1757 15642 77102;77103;77104;77105;77106;77107;77108;77109 78308;78309;78310;78311;78312;78313;78314;78315;78316 78309 9 IIMCAWNPR QRVIDTIKTNPDDRRIIMCAWNPRDLPLMA NPDDRRIIMCAWNPRDLPLMALPPCHALCQ R I I P R D 1 1 1 0 1 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 0 9 0 1159.5631 P04818 P04818 177 185 TYMS Thymidylate synthase yes yes 2 0.0702 26.602 By matching By MS/MS 1 1 1.1001 0.98673 0.85882 2 Median 1.027 0.98075 NaN 1 0 Median 1.1784 0.99274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5663500 2977800 2685700 3728800 2085100 1643700 1934800 892700 1042100 0 0 0 0 0 0 0 0 0 0 0 0 15021 1852 15643 77110;77111 78317;78318 78317 2 IIMPPSALDQLSR LAGPNDRSDVEKGGKIIMPPSALDQLSRLN GKIIMPPSALDQLSRLNITYPMLFKLTNKN K I I S R L 1 1 0 1 0 1 0 0 0 2 2 0 1 0 2 2 0 0 0 0 0 0 13 0 1439.7806 Q92890;C9J6N9 Q92890 46 58 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 2 8.4189E-05 129.16 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 3 1 1 1 0.84077 0.8293 46.187 11 Median 0.57065 0.56102 43.801 2 1 Median 0.96166 0.8293 73.768 3 0 Median 0.84077 0.83242 17.268 3 0 Median 1.0335 0.91609 NaN 1 0 Median 1.4318 1.5001 NaN 1 0 Median 0.80662 0.71042 NaN 1 0 Median 43686000 23270000 20416000 28332000 16112000 12220000 3501200 1750000 1751200 9222700 4275100 4947600 1462900 657530 805400 776320 283090 493230 390360 192140 198210 15022 3562 15644;15645 77112;77113;77114;77115;77116;77117;77118;77119;77120;77121;77122 78319;78320;78321;78322;78323;78324;78325;78326;78327;78328;78329;78330;78331 78319 1774 13 IIMTSSASGIYGNFGQANYSAAK TRAAWEHMKKQKYGRIIMTSSASGIYGNFG GIYGNFGQANYSAAKLGLLGLANSLAIEGR R I I A K L 4 0 2 0 0 1 0 3 0 3 0 1 1 1 0 4 1 0 2 0 0 0 23 0 2350.1263 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;G5E9S2;E7ET17;A0A2R8Y7W2 A0A2R8YD50 146 168 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2;3 2.3198E-28 111.3 By MS/MS By matching By MS/MS By matching 3 2 4 4 1.2076 1.2183 15.229 13 Median 1.0751 1.0029 4.1574 3 0 Median 1.5247 1.2932 8.4439 2 0 Median 1.1324 1.1273 10.055 4 0 Median 1.596 1.3856 6.7286 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46182000 22486000 23696000 26283000 12928000 13355000 1542900 597030 945830 17276000 8532300 8744200 1079400 428530 650880 0 0 0 0 0 0 15023 393 15646 77123;77124;77125;77126;77127;77128;77129;77130;77131;77132;77133;77134;77135 78332;78333;78334;78335;78336;78337;78338;78339;78340;78341 78335 10 IIMYDQNHLLGR DLITQATLLYTMADKIIMYDQNHLLGRACF ADKIIMYDQNHLLGRACFCLLEGDKMDQAD K I I G R A 0 1 1 1 0 1 0 1 1 2 2 0 1 0 0 0 0 0 1 0 0 0 12 0 1471.7606 Q6PD62;H0YCE8 Q6PD62 123 134 CTR9 RNA polymerase-associated protein CTR9 homolog yes no 3 0.00095468 45.915 By matching By matching By MS/MS 1 1 1 1.027 1.1293 16.803 3 Median 0.83864 0.86961 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.027 1.1293 NaN 1 0 Median 1.3977 1.19 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14857000 6371900 8485000 2075500 859260 1216200 0 0 0 10536000 4646900 5888800 2245700 865740 1380000 0 0 0 0 0 0 15024 3168 15647 77136;77137;77138 78342 78342 1 IINADSEDPK TLQSEQPLQVARCTKIINADSEDPKYIINV ARCTKIINADSEDPKYIINVKQFAKFVVDL K I I P K Y 1 0 1 2 0 0 1 0 0 2 0 1 0 0 1 1 0 0 0 0 0 0 10 0 1100.535 P35998;C9JLS9 P35998 101 110 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0011182 68.371 By MS/MS By MS/MS 1 1 0.80801 0.73506 8.3238 2 Median 0.80237 0.77962 NaN 1 0 Median 0.81369 0.69305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6268100 3314800 2953200 1776900 946350 830510 4491200 2368500 2122700 0 0 0 0 0 0 0 0 0 0 0 0 15025 2253 15648 77139;77140 78343;78344;78345 78345 3 IINADSEDPKYIINVK TLQSEQPLQVARCTKIINADSEDPKYIINV INADSEDPKYIINVKQFAKFVVDLSDQVAP K I I V K Q 1 0 2 2 0 0 1 0 0 4 0 2 0 0 1 1 0 0 1 1 0 0 16 1 1830.9727 P35998;C9JLS9 P35998 101 116 PSMC2 26S protease regulatory subunit 7 yes no 3 4.3592E-05 57.679 By MS/MS 1 1.9667 1.8736 NaN 1 Median 1.9667 1.8736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17834000 7554000 10280000 17834000 7554000 10280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15026 2253 15649 77141 78346 78346 1 IINAFFPEGEDQVNFR FQRIPELAINPLGDRIINAFFPEGEDQVNF INAFFPEGEDQVNFRGFMRTLAHFRPIEDN R I I F R G 1 1 2 1 0 1 2 1 0 2 0 0 0 3 1 0 0 0 0 1 0 0 16 0 1894.9214 Q99653;H0YKE7;F5GX29;H0YNG9;H0YLY7 Q99653 66 81 CHP1 Calcineurin B homologous protein 1 yes no 2 0.021004 39.917 By MS/MS 1 1.1479 1.0827 NaN 1 Median 1.1479 1.0827 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2377700 1251300 1126500 2377700 1251300 1126500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15027 3760 15650 77142 78347 78347 1 IINDLLQSLR AHIMGPPDRCEHAARIINDLLQSLRSGPPG EHAARIINDLLQSLRSGPPGPPGGPGMPPG R I I L R S 0 1 1 1 0 1 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1183.6925 Q92945;A0A087WTP3 Q92945 385 394 KHSRP Far upstream element-binding protein 2 yes no 2 5.4366E-06 155.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 8 6 4 5 1.1301 1.0471 16.134 29 Median 1.064 1.0063 8.4885 3 0 Median 1.2087 1.0471 11.08 3 0 Median 1.0181 1.085 18.15 8 0 Median 1.2242 1.0585 26.499 6 0 Median 1.0367 1.0426 10.967 4 0 Median 1.2279 1.0072 8.4495 5 0 Median 1494000000 699480000 794570000 21706000 10084000 11622000 303270000 130800000 172470000 732000000 360190000 371800000 248530000 109170000 139360000 91957000 44561000 47395000 96585000 44667000 51918000 15028 3568 15651 77143;77144;77145;77146;77147;77148;77149;77150;77151;77152;77153;77154;77155;77156;77157;77158;77159;77160;77161;77162;77163;77164;77165;77166;77167;77168;77169;77170;77171 78348;78349;78350;78351;78352;78353;78354;78355;78356;78357;78358;78359;78360;78361;78362;78363;78364;78365;78366;78367;78368;78369;78370;78371;78372;78373;78374;78375;78376;78377;78378;78379 78351 32 IINDNATYCR RVREWYGYHFPELVKIINDNATYCRLAQFI PELVKIINDNATYCRLAQFIGNRRELNEDK K I I C R L 1 1 2 1 1 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 10 0 1238.5714 O00567;A0A494C128;Q5JXT2 O00567 203 212 NOP56 Nucleolar protein 56 yes no 2 0.00036244 107.47 By MS/MS By MS/MS 1 2 0.93287 0.94096 22.855 3 Median NaN NaN NaN 0 0 Median 1.6127 1.3947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90772 0.93878 0.32733 2 1 Median NaN NaN NaN 0 0 Median 9225200 4586800 4638500 0 0 0 1933900 760880 1173000 0 0 0 0 0 0 7291300 3825900 3465400 0 0 0 15029 1472 15652 77172;77173;77174 78380;78381;78382;78383 78381 4 IINEPTAAAIAYGLDK ATKDAGTIAGLNVMRIINEPTAAAIAYGLD INEPTAAAIAYGLDKREGEKNILVFDLGGG R I I D K R 4 0 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 16 0 1658.8879 P11142;E9PKE3;E9PN89;E9PLF4;E9PI65;Q53FA3;P34931;P54652;P11021 P11021 198 213 HSPA8;HSPA1L;HSPA2;HSPA5 Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1-like;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein no no 2;3 7.593E-07 94.122 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 4 4 3 0.99455 0.93527 25.082 20 Median 1.0836 1.0033 7.7704 3 0 Median 0.9847 0.84044 22.099 3 0 Median 1.0179 0.98557 6.5868 3 1 Median 0.81488 0.7114 24.275 4 0 Median 0.94916 0.94838 6.9647 4 0 Median 1.056 0.84818 45.563 3 0 Median 387030000 188830000 198200000 135140000 64446000 70695000 44418000 21764000 22654000 140100000 68763000 71335000 36861000 18180000 18681000 29197000 15018000 14179000 1314200 657430 656820 15030 1948;1950;2229;2483 15653 77175;77176;77177;77178;77179;77180;77181;77182;77183;77184;77185;77186;77187;77188;77189;77190;77191;77192;77193;77194 78384;78385;78386;78387;78388;78389;78390;78391;78392;78393;78394;78395;78396;78397;78398;78399;78400;78401;78402;78403;78404 78385 21 IINEPTAAAIAYGLDKK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD NEPTAAAIAYGLDKKVGAERNVLIFDLGGG R I I K K V 4 0 1 1 0 0 1 1 0 3 1 2 0 0 1 0 1 0 1 0 0 0 17 1 1786.9829 P11142;E9PKE3;E9PN89;E9PI65;P54652 P11142 172 188 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2;3 3.8229E-13 126.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 6 5 7 3 1.0259 0.99436 12.206 33 Median 1.0204 0.97355 9.0045 7 0 Median 1.0767 0.98523 18.963 5 0 Median 0.96255 1.0208 10.849 6 0 Median 1.1088 1.0099 15.355 5 0 Median 0.99112 1.1076 8.242 7 0 Median 1.0259 0.92206 1.8755 3 0 Median 1471100000 717930000 753120000 634130000 302520000 331610000 366930000 179010000 187920000 306110000 154960000 151140000 19441000 9159200 10281000 132960000 66569000 66387000 11489000 5707800 5781100 15031 1950;2483 15654 77195;77196;77197;77198;77199;77200;77201;77202;77203;77204;77205;77206;77207;77208;77209;77210;77211;77212;77213;77214;77215;77216;77217;77218;77219;77220;77221;77222;77223;77224;77225;77226;77227 78405;78406;78407;78408;78409;78410;78411;78412;78413;78414;78415;78416;78417;78418;78419;78420;78421;78422;78423;78424;78425;78426;78427;78428;78429;78430;78431;78432;78433;78434;78435;78436;78437;78438;78439;78440;78441;78442;78443 78413 39 IINEPTAAAIAYGLDKR ATKDAGTIAGLNVMRIINEPTAAAIAYGLD NEPTAAAIAYGLDKREGEKNILVFDLGGGT R I I K R E 4 1 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 17 1 1814.989 P11021 P11021 198 214 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 6.5308E-24 185.59 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 4 2 1 2 2 1.0375 1.0906 36.619 15 Median 1.0192 1.0505 35.259 4 1 Median 0.8423 0.78112 34.299 4 0 Median 0.91887 0.97739 17.053 2 1 Median 1.202 1.1576 NaN 1 0 Median 1.5386 1.6439 9.8178 2 0 Median 1.5095 1.3505 1.4785 2 0 Median 285130000 137350000 147780000 224060000 107290000 116770000 5745600 2874500 2871100 40483000 21472000 19011000 492200 221280 270910 12252000 4679900 7571700 2097900 808270 1289600 15032 1948 15655 77228;77229;77230;77231;77232;77233;77234;77235;77236;77237;77238;77239;77240;77241;77242 78444;78445;78446;78447;78448;78449;78450;78451;78452 78448 9 IINEPTAAAIAYGLDR ATKDAGVIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDRTGKGERNVLIFDLGG R I I D R T 4 1 1 1 0 0 1 1 0 3 1 0 0 0 1 0 1 0 1 0 0 0 16 0 1686.8941 A0A0G2JIW1;P0DMV9;P0DMV8;P17066 A0A0G2JIW1 173 188 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2;3 1.8414E-14 176.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 12 13 13 8 14 11 1.113 1.1141 18.49 71 Plateau 1.1622 1.1076 13.784 12 1 Median 1.0732 0.92289 19.378 13 0 Median 1.0787 1.0982 11.087 13 1 Median 1.0789 0.90351 6.059 8 0 Median 1.176 1.185 13.774 14 0 Median 1.113 0.88985 9.5097 11 0 Median 2424800000 1112600000 1312200000 905370000 405510000 499860000 667080000 314830000 352250000 519510000 242760000 276760000 130790000 60039000 70751000 183750000 81195000 102560000 18263000 8248200 10014000 15033 278;2035 15656 77243;77244;77245;77246;77247;77248;77249;77250;77251;77252;77253;77254;77255;77256;77257;77258;77259;77260;77261;77262;77263;77264;77265;77266;77267;77268;77269;77270;77271;77272;77273;77274;77275;77276;77277;77278;77279;77280;77281;77282;77283;77284;77285;77286;77287;77288;77289;77290;77291;77292;77293;77294;77295;77296;77297;77298;77299;77300;77301;77302;77303;77304;77305;77306;77307;77308;77309;77310;77311;77312;77313 78453;78454;78455;78456;78457;78458;78459;78460;78461;78462;78463;78464;78465;78466;78467;78468;78469;78470;78471;78472;78473;78474;78475;78476;78477;78478;78479;78480;78481;78482;78483;78484;78485;78486;78487;78488;78489;78490;78491;78492;78493;78494;78495;78496;78497;78498;78499;78500;78501;78502;78503;78504;78505;78506;78507;78508;78509;78510;78511;78512;78513;78514;78515;78516;78517;78518;78519;78520;78521;78522;78523;78524;78525;78526;78527;78528;78529;78530;78531;78532;78533;78534;78535;78536;78537 78480 85 IINEVKPTEIYNLGAQSHVK KLHYGDLTDSTCLVKIINEVKPTEIYNLGA KPTEIYNLGAQSHVKISFDLAEYTADVDGV K I I V K I 1 0 2 0 0 1 2 1 1 3 1 2 0 0 1 1 1 0 1 2 0 0 20 1 2252.2165 O60547 O60547 96 115 GMDS GDP-mannose 4,6 dehydratase yes yes 3;4 2.8663E-06 48.824 By MS/MS By matching 2 1 0.84598 0.78561 11.067 3 Median 0.80031 0.74306 7.8745 2 1 Median 0.96402 0.87694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29722000 14460000 15262000 29051000 14106000 14945000 671450 353950 317490 0 0 0 0 0 0 0 0 0 0 0 0 15034 1620 15657 77314;77315;77316 78538;78539;78540 78539 3 IINEVSKPLAHHIPVEK RLCYYIGATDDAATKIINEVSKPLAHHIPV NEVSKPLAHHIPVEKICEKLKKKDSQICEL K I I E K I 1 0 1 0 0 0 2 0 2 3 1 2 0 0 2 1 0 0 0 2 0 0 17 1 1923.0942 P55145;A8K878 P55145 88 104 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2;3;4 6.1479E-06 73.848 By MS/MS By MS/MS By MS/MS By matching 2 5 3 1 0.92073 0.87424 24.55 11 Median 1.24 1.2416 49.828 2 0 Median NaN NaN NaN 0 0 Median 0.86985 0.87424 14.512 5 0 Median 0.98992 0.89353 3.1065 3 0 Median NaN NaN NaN 0 0 Median 0.9963 0.84036 NaN 1 0 Median 215830000 108390000 107440000 10776000 5365900 5409800 0 0 0 86993000 46124000 40869000 117840000 56780000 61056000 0 0 0 224350 117320 107020 15035 538 15658 77317;77318;77319;77320;77321;77322;77323;77324;77325;77326;77327 78541;78542;78543;78544;78545;78546;78547;78548;78549;78550;78551;78552;78553;78554;78555;78556 78550 16 IINFAPSLLR KLRIAAENELNQSYKIINFAPSLLRIIVSD NQSYKIINFAPSLLRIIVSDHVEFPVRQAA K I I L R I 1 1 1 0 0 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1142.6812 O15397;F5H2I3 O15397 32 41 IPO8 Importin-8 yes no 2 0.0019484 61.999 By MS/MS By matching By matching 1 1 1 1.0874 0.99527 9.1428 3 Median 1.0199 0.98618 NaN 1 0 Median 1.1638 0.99527 NaN 1 0 Median 1.0874 1.1605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7939200 3951400 3987900 4975500 2618800 2356700 2522500 1093600 1429000 441180 238960 202220 0 0 0 0 0 0 0 0 0 15036 1545 15659 77328;77329;77330 78557;78558 78558 2 IINILTDK AKYRDHVTATQLIQKIINILTDKHGAWGNS ATQLIQKIINILTDKHGAWGNSAVSRPLEF K I I D K H 0 0 1 1 0 0 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 0 8 0 928.55933 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1957 1964 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.03399 38.16 By matching By MS/MS 1 2 1.2118 1.1258 24.14 3 Plateau 1.0747 1.0668 NaN 1 0 Median 1.0427 0.91064 31.599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8314200 3842800 4471400 3344900 1600000 1744800 4969300 2242800 2726500 0 0 0 0 0 0 0 0 0 0 0 0 15037 470 15660 77331;77332;77333 78559;78560 78559 2 IINLTSVLSLQEEINEQGHEVLR DSRKEMTAACTPRRRIINLTSVLSLQEEIN SLQEEINEQGHEVLREMLHNHSFVGCVNPQ R I I L R E 0 1 2 0 0 2 4 1 1 3 4 0 0 0 0 2 1 0 0 2 0 0 23 0 2633.4024 H0Y818;P40692;H0Y806;A0A087WX20 H0Y818 492 514 MLH1 DNA mismatch repair protein Mlh1 yes no 3 2.3905E-05 47.808 By MS/MS 1 1.2529 1.1265 NaN 1 Median NaN NaN NaN 0 0 Median 1.2529 1.1265 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1013900 381990 631940 0 0 0 1013900 381990 631940 0 0 0 0 0 0 0 0 0 0 0 0 15038 1158 15661 77334 78561 78561 1 IINNTENLVR ISVLEMSHRSSDFAKIINNTENLVRELLAV SDFAKIINNTENLVRELLAVPDNYKVIFLQ K I I V R E 0 1 3 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 Q9Y617 Q9Y617 52 61 PSAT1 Phosphoserine aminotransferase yes yes 2 4.3566E-05 138.54 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.1284 1.0703 23.941 6 Median 1.3494 1.3366 15.965 2 1 Median 1.1007 0.95877 NaN 1 0 Median 0.94584 0.97862 35.008 2 0 Median 1.086 0.95936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88813000 40507000 48305000 53092000 24031000 29062000 26123000 12334000 13789000 8001300 3431200 4570100 1596400 711370 885030 0 0 0 0 0 0 15039 4476 15662 77335;77336;77337;77338;77339;77340 78562;78563;78564;78565;78566;78567;78568;78569;78570 78563 9 IINPMGLLVEELK LITQMTGKELFEMWKIINPMGLLVEELKKR WKIINPMGLLVEELKKRNVSAPESRLTRQS K I I L K K 0 0 1 0 0 0 2 1 0 2 3 1 1 0 1 0 0 0 0 1 0 0 13 0 1467.8371 Q9H9J2 Q9H9J2 234 246 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 2 0.0015521 51.927 By MS/MS By MS/MS By matching 1 1 1 0.93364 0.8974 27.575 3 Median 0.80546 0.79015 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93364 0.8974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6277 1.3402 NaN 1 0 Median 3886900 1930700 1956200 1791600 913240 878400 0 0 0 2059700 1005000 1054700 0 0 0 0 0 0 35555 12494 23061 15040 4000 15663 77341;77342;77343 78571;78572 78572 2 IINTEQYMHSLTWQQALTGLLER WRTGAIIPELEREIRIINTEQYMHSLTWQQ HSLTWQQALTGLLERMQTYQDAESRQVLAA R I I E R M 1 1 1 0 0 3 2 1 1 2 4 0 1 0 0 1 3 1 1 0 0 0 23 0 2744.3956 Q9H857;H7C519 Q9H857 388 410 NT5DC2 5-nucleotidase domain-containing protein 2 yes no 3 0.00066192 26.627 By MS/MS 1 1.3598 1.1898 NaN 1 Median NaN NaN NaN 0 0 Median 1.3598 1.1898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 692980 243130 449860 0 0 0 692980 243130 449860 0 0 0 0 0 0 0 0 0 0 0 0 15041 3989 15664 77344 78573 78573 1 IINTFLK TLEEDSKMTRLISCRIINTFLKTSGGMTDP MTRLISCRIINTFLKTSGGMTDPEKLIRIY R I I L K T 0 0 1 0 0 0 0 0 0 2 1 1 0 1 0 0 1 0 0 0 0 0 7 0 847.51674 Q86Y56;H0Y650;E9PGY2 Q86Y56 724 730 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.014908 73.039 By MS/MS By matching 1 1 1.2434 1.1444 17.895 2 Median 1.0712 1.0084 NaN 1 0 Median 1.4434 1.2988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5854500 2722800 3131700 4946100 2349100 2597000 908390 373730 534670 0 0 0 0 0 0 0 0 0 0 0 0 15042 3305 15665 77345;77346 78574;78575 78575 2 IINTPEVVR QLMRVYGALMWSLGKIINTPEVVRVYIGSF MWSLGKIINTPEVVRVYIGSFWSHPLLIPD K I I V R V 0 1 1 0 0 0 1 0 0 2 0 0 0 0 1 0 1 0 0 2 0 0 9 0 1039.6026 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8 A0A024R571 257 265 EHD1 EH domain-containing protein 1 yes no 2 0.00029074 138.26 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 2 0.9917 0.91502 41.413 9 Median 0.9621 0.91502 NaN 1 0 Median 1.2242 1.1044 1.6236 2 0 Median 0.867 0.89758 NaN 1 0 Median 0.96711 0.82173 1.4137 2 1 Median 2.9975 3.0054 NaN 1 0 Median 1.1364 0.9752 30.224 2 0 Median 36209000 16936000 19273000 11314000 5545200 5768800 8508900 4337700 4171200 4400500 2043500 2357000 2300600 1116500 1184100 4215300 1354400 2860800 5469900 2538500 2931400 15043 5 15666 77347;77348;77349;77350;77351;77352;77353;77354;77355 78576;78577;78578;78579;78580;78581;78582;78583;78584;78585 78576 9 IINYRDDEK SDSTSWSCHAQAVLKIINYRDDEKSFSRRI AQAVLKIINYRDDEKSFSRRISHLFFHKEN K I I E K S 0 1 1 2 0 0 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 9 1 1164.5775 Q93009;H3BND8;F5H2X1;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q93009 140 148 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00027455 151.44 By matching By MS/MS By matching By matching 1 1 1 1 1.1878 1.167 13.619 4 Median 1.1465 1.1854 NaN 1 0 Median 1.2307 1.1489 NaN 1 0 Median 0.82071 0.93645 NaN 1 0 Median 1.3437 1.2913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10492000 4850100 5641500 939590 456300 483300 7222000 3235600 3986400 1657700 922040 735630 672290 236110 436180 0 0 0 0 0 0 15044 3574 15667 77356;77357;77358;77359 78586;78587 78587 2 IINYRDDEKSFSR SDSTSWSCHAQAVLKIINYRDDEKSFSRRI LKIINYRDDEKSFSRRISHLFFHKENDWGF K I I S R R 0 2 1 2 0 0 1 0 0 2 0 1 0 1 0 2 0 0 1 0 0 0 13 2 1641.8111 Q93009;H3BND8;F5H2X1;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q93009 140 152 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.067305 13.137 By MS/MS 1 1.9983 2.2528 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9983 2.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1910600 579740 1330900 0 0 0 0 0 0 1910600 579740 1330900 0 0 0 0 0 0 0 0 0 15045 3574 15668 77360 78588 78588 1 IIPAIWFR TVANKEYVAYSHTGRIIPAIWFRYDLSPIT AYSHTGRIIPAIWFRYDLSPITVKYTERRQ R I I F R Y 1 1 0 0 0 0 0 0 0 3 0 0 0 1 1 0 0 1 0 0 0 0 8 0 1014.6015 Q969X5 Q969X5 225 232 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 2 0.0062036 72.234 By MS/MS By matching By matching 1 1 1 0.95373 0.89713 15.532 3 Median 0.95373 0.89078 NaN 1 0 Median 1.3565 1.1698 NaN 1 0 Median 0.92104 0.89713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8928500 4555300 4373200 8428600 4282300 4146400 129000 59402 69596 370860 213590 157270 0 0 0 0 0 0 0 0 0 15046 3590 15669 77361;77362;77363 78589;78590;78591;78592 78592 4 IIPALQSR TENTRFCLICNYLSKIIPALQSRCTRFRFG ICNYLSKIIPALQSRCTRFRFGPLTPELMV K I I S R C 1 1 0 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 0 8 0 896.54435 P40937;F5H5S0;E9PEP3 P40937 161 168 RFC5 Replication factor C subunit 5 yes no 2 0.012861 54.157 By matching By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1.0287 1.0166 19.444 7 Median 0.93825 0.93783 6.0366 2 0 Median 1.2307 1.0395 45.643 2 0 Median 1.0287 1.0166 NaN 1 0 Median 1.1623 1.0219 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.287 1.0577 NaN 1 0 Median 17140000 8217300 8922600 5195100 2593800 2601300 3734600 1487300 2247300 6117000 3165700 2951300 1801500 808340 993170 0 0 0 291690 162120 129570 15047 2293 15670 77364;77365;77366;77367;77368;77369;77370 78593;78594;78595 78593 3 IIPEITAMK KLQLEETMPSPYGRRIIPEITAMKADASKK SPYGRRIIPEITAMKADASKKLLKKKKGDL R I I M K A 1 0 0 0 0 0 1 0 0 3 0 1 1 0 1 0 1 0 0 0 0 0 9 0 1014.5784 Q02880 Q02880 1242 1250 TOP2B DNA topoisomerase 2-beta yes yes 2 0.0011047 85.212 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 0.87258 0.91673 16.477 6 Median NaN NaN NaN 0 0 Median 1.3115 1.1438 NaN 1 0 Median 0.76705 0.83459 14.583 2 0 Median 1.227 1.1168 NaN 1 0 Median 0.83383 0.86567 6.7994 2 0 Median NaN NaN NaN 0 0 Median 23574000 13285000 10289000 0 0 0 351460 155600 195860 11869000 7180800 4688100 942690 428320 514360 10411000 5520700 4890300 0 0 0 15048 2704 15671 77371;77372;77373;77374;77375;77376 78596;78597;78598;78599;78600 78596 5 IIPENDIK VVSGNVEPKVNNINKIIPENDIKSLTVKES KVNNINKIIPENDIKSLTVKESAIRPFING K I I I K S 0 0 1 1 0 0 1 0 0 3 0 1 0 0 1 0 0 0 0 0 0 0 8 0 940.52295 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1572 1579 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.013566 52.786 By MS/MS 1 0.67822 0.73888 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67822 0.73888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2623300 1445600 1177700 0 0 0 0 0 0 2623300 1445600 1177700 0 0 0 0 0 0 0 0 0 15049 2762 15672 77377 78601;78602 78602 2 IIPGADADVVVWDPEATK SNAAKLLNLYPRKGRIIPGADADVVVWDPE GADADVVVWDPEATKTISASTQVQGGDFNL R I I T K T 3 0 0 3 0 0 1 1 0 2 0 1 0 0 2 0 1 1 0 3 0 0 18 0 1894.9676 Q9BPU6 Q9BPU6 394 411 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2 0.0020625 34.179 By MS/MS By MS/MS 1 1 0.54258 0.53932 1.8751 2 Median 0.56936 0.54651 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51706 0.53221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6696600 4610000 2086600 4254500 3096100 1158400 0 0 0 2442200 1514000 928230 0 0 0 0 0 0 0 0 0 15050 3776 15673 77378;77379 78603;78604;78605 78603 3 IIPGFMCQGGDFTR TGEKGFGYKGSCFHRIIPGFMCQGGDFTRH RIIPGFMCQGGDFTRHNGTGGKSIYGEKFE R I I T R H 0 1 0 1 1 1 0 3 0 2 0 0 1 2 1 0 1 0 0 0 0 0 14 0 1597.7381 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 P62937 56 69 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 2;3 2.5062E-08 137.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 8 2 4 1.0519 0.9334 12.153 28 Median 0.98858 0.94395 18.741 6 0 Median 1.094 0.91355 5.6297 8 0 Median 0.95662 0.96574 8.2507 8 1 Median 1.112 0.90153 4.3633 2 0 Median 1.0938 1.1369 14.884 4 2 Median NaN NaN NaN 0 0 Median 1211000000 592430000 618540000 376540000 181400000 195140000 155510000 71939000 83572000 666170000 333140000 333030000 3649800 1679300 1970500 9103900 4274600 4829300 0 0 0 15051 2611 15674;15675 77380;77381;77382;77383;77384;77385;77386;77387;77388;77389;77390;77391;77392;77393;77394;77395;77396;77397;77398;77399;77400;77401;77402;77403;77404;77405;77406;77407 78606;78607;78608;78609;78610;78611;78612;78613;78614;78615;78616;78617;78618;78619;78620;78621;78622;78623;78624;78625;78626;78627;78628;78629;78630;78631;78632;78633;78634;78635;78636;78637;78638;78639;78640;78641;78642;78643;78644;78645;78646;78647;78648;78649 78633 1274 44 IIPGGIADR IMGGKEQNSPIYISRIIPGGIADRHGGLKR PIYISRIIPGGIADRHGGLKRGDQLLSVNG R I I D R H 1 1 0 1 0 0 0 2 0 3 0 0 0 0 1 0 0 0 0 0 0 0 9 0 910.52362 Q9NUP9;G3V1D4 Q9NUP9 122 130 LIN7C Protein lin-7 homolog C yes no 2 0.002528 71.379 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.8592 0.82041 19.702 6 Median 0.76755 0.74569 16.194 2 0 Median 0.95209 0.80495 NaN 1 0 Median 0.77518 0.75967 15.267 2 0 Median 1.3385 1.1503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31768000 16188000 15580000 9703500 5185300 4518100 4067100 2040000 2027000 15780000 8057000 7723400 2217500 905640 1311900 0 0 0 0 0 0 15052 4117 15676 77408;77409;77410;77411;77412;77413 78650;78651;78652;78653 78651 4 IIPLYSTLPPQQQQR KREVDDLGPEVGDIKIIPLYSTLPPQQQQR IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG K I I Q R I 0 1 0 0 0 4 0 0 0 2 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1780.9836 O43143 O43143 385 399 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 9.4926E-07 96.015 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 2 1 7 3 0.69032 0.65311 18.415 17 Median 0.69032 0.65311 21.471 3 0 Median 0.75232 0.6851 NaN 1 0 Median 0.55454 0.58886 3.7425 2 0 Median 0.73746 0.63537 NaN 1 0 Median 0.66947 0.65899 10.996 7 0 Median 0.70995 0.62628 37.38 3 0 Median 83490000 50593000 32897000 24269000 14612000 9657000 736520 435560 300960 21373000 13107000 8265400 1716200 959480 756750 34547000 21072000 13474000 848460 405810 442650 15053 1553 15677 77414;77415;77416;77417;77418;77419;77420;77421;77422;77423;77424;77425;77426;77427;77428;77429;77430 78654;78655;78656;78657;78658;78659;78660;78661;78662;78663;78664;78665;78666;78667;78668;78669;78670;78671;78672;78673;78674;78675;78676;78677 78656 24 IIPPGSGIIHQVNLEYLAR FEFLKWGSQAFHNMRIIPPGSGIIHQVNLE GSGIIHQVNLEYLARVVFDQDGYYYPDSLV R I I A R V 1 1 1 0 0 1 1 2 1 4 2 0 0 0 2 1 0 0 1 1 0 0 19 0 2089.1684 P21399 P21399 169 187 ACO1 Cytoplasmic aconitate hydratase yes yes 3 3.565E-10 91.457 By MS/MS By MS/MS By matching 2 1 1 0.73193 0.74696 8.7024 4 Median 0.72843 0.71569 0.95296 2 0 Median 0.9921 0.85965 NaN 1 0 Median 0.72866 0.77437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18608000 10187000 8421700 5948400 3389300 2559100 4093500 2005600 2087900 8566500 4791700 3774800 0 0 0 0 0 0 0 0 0 15054 2090 15678 77431;77432;77433;77434 78678;78679;78680;78681 78681 4 IIPPQPMEGLGFLDALNSAPVPGIK PLNTTPNATKEIKVKIIPPQPMEGLGFLDA GFLDALNSAPVPGIKIKKKKKVLSPTAAKP K I I I K I 2 0 1 1 0 1 1 3 0 3 3 1 1 1 5 1 0 0 0 1 0 0 25 0 2573.3927 Q96QC0 Q96QC0 280 304 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 0.061749 6.5761 By MS/MS 1 0.38617 0.40414 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38617 0.40414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 482470 359750 122720 0 0 0 0 0 0 482470 359750 122720 0 0 0 0 0 0 0 0 0 15055 3718 15679 77435 78682 78682 1 IIPQGADSTMLATK SPGVMGTSVATSASKIIPQGADSTMLATKT KIIPQGADSTMLATKTVKHGAPSPSHPISA K I I T K T 2 0 0 1 0 1 0 1 0 2 1 1 1 0 1 1 2 0 0 0 0 0 14 0 1444.7596 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1048 1061 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.0028695 40.589 By matching By MS/MS By matching By matching 1 1 1 1 0.84878 0.84856 39.078 4 Median NaN NaN NaN 0 0 Median 1.0369 0.91394 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1455 1.0364 NaN 1 0 Median 0.6948 0.78786 NaN 1 0 Median 0.48295 0.429 NaN 1 0 Median 14282000 5840100 8442300 0 0 0 1774100 898130 875960 0 0 0 2313400 1072800 1240600 8473700 3088100 5385600 1721100 781010 940110 15056 467 15680 77436;77437;77438;77439 78683;78684;78685 78683 3 IIPRHLQLAIR LELAGNAARDNKKTRIIPRHLQLAIRNDEE KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R I I I R N 1 2 0 0 0 1 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 0 11 1 1328.8405 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6 A0A0U1RR32 79 89 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A no no 2;3 5.2054E-05 111.04 By MS/MS By MS/MS 3 3 1.0831 1.0059 19.377 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92876 1.013 26.783 3 0 Median 1.1799 0.99879 14.665 3 0 Median 57195000 31200000 25995000 0 0 0 0 0 0 0 0 0 0 0 0 35431000 20966000 14465000 21764000 10234000 11530000 15057 308;1856;2024 15681 77440;77441;77442;77443;77444;77445 78686;78687;78688;78689 78686 4 IIPTLEEYQHYK SISADIETIGEILKKIIPTLEEYQHYKGSD LKKIIPTLEEYQHYKGSDFDCELRLLIHQS K I I Y K G 0 0 0 0 0 1 2 0 1 2 1 1 0 0 1 0 1 0 2 0 0 0 12 0 1532.7875 Q5T6W2 Q5T6W2 104 115 HNRNPK yes yes 2;3 4.309E-06 123.35 By matching By MS/MS By MS/MS By MS/MS By matching 1 5 4 7 1 0.8425 0.84151 16.648 18 Median NaN NaN NaN 0 0 Median 1.2243 1.0863 NaN 1 0 Median 0.91394 0.8714 9.5881 5 0 Median 1.1228 0.96256 7.0288 4 0 Median 0.79048 0.80872 13.595 7 0 Median 0.69576 0.58161 NaN 1 0 Median 487920000 257190000 230720000 0 0 0 570780 308760 262020 262290000 135930000 126350000 27956000 12637000 15318000 194370000 106800000 87567000 2738700 1516600 1222100 15058 3093 15682 77446;77447;77448;77449;77450;77451;77452;77453;77454;77455;77456;77457;77458;77459;77460;77461;77462;77463 78690;78691;78692;78693;78694;78695;78696;78697;78698;78699;78700;78701;78702;78703;78704;78705;78706;78707 78700 18 IIPVLLEHGLER MILKQTFCEVPDLDRIIPVLLEHGLERLPE LDRIIPVLLEHGLERLPEHCKLSPGIPLKP R I I E R L 0 1 0 0 0 0 2 1 1 2 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1387.8187 F5GZ28;P18858;M0R0Q7 F5GZ28 448 459 LIG1 DNA ligase;DNA ligase 1 yes no 3 0.056138 13.679 By MS/MS By matching By matching By matching 1 1 1 1 0.82416 0.76185 31.391 4 Median 0.67471 0.66101 NaN 1 0 Median 1.0067 0.87808 NaN 1 0 Median 0.4246 0.46186 NaN 1 0 Median 1.0302 0.90874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5599900 3417600 2182300 2604000 1645100 958940 1178900 507560 671340 1618200 1175300 442900 198810 89649 109170 0 0 0 0 0 0 15059 1014 15683 77464;77465;77466;77467 78708 78708 1 IIPYLSFGEVEK TFVRSNPSVLQGLLRIIPYLSFGEVEKMQI LLRIIPYLSFGEVEKMQILVERFKPYCNFD R I I E K M 0 0 0 0 0 0 2 1 0 2 1 1 0 1 1 1 0 0 1 1 0 0 12 0 1393.7493 Q5T4S7;X6R960 Q5T4S7 4619 4630 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 9.8435E-05 91.658 By MS/MS By MS/MS 1 1 1.0718 1.1265 8.1557 2 Median 1.0603 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0833 1.1933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16098000 7874400 8223500 14870000 7314800 7555200 0 0 0 1227900 559580 668300 0 0 0 0 0 0 0 0 0 15060 3089 15684 77468;77469 78709;78710;78711 78710 3 IIQAAINSDGGQPEIK GNYTSVLEFSDDIVKIIQAAINSDGGQPEI IQAAINSDGGQPEIKKANSMVKSFFIRQME K I I I K K 2 0 1 1 0 2 1 2 0 4 0 1 0 0 1 1 0 0 0 0 0 0 16 0 1652.8733 Q03164 Q03164 1733 1748 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 4.3204E-08 96.64 By MS/MS By matching 2 1 0.80753 0.77941 10.57 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73897 0.81141 14.583 2 1 Median 0.85616 0.77941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9339500 5124900 4214600 0 0 0 0 0 0 8361600 4552800 3808800 977820 572060 405760 0 0 0 0 0 0 15061 2708 15685 77470;77471;77472 78712;78713;78714 78714 3 IIQAFMSQGEHR FHPATAKPLSWQHSKIIQAFMSQGEHRQAL HSKIIQAFMSQGEHRQALRYIQTMKPTVSS K I I H R Q 1 1 0 0 0 2 1 1 1 2 0 0 1 1 0 1 0 0 0 0 0 0 12 0 1415.698 Q8WYP5 Q8WYP5 846 857 AHCTF1 Protein ELYS yes yes 2;3 1.4496E-06 99.539 By MS/MS 2 0.97472 1.0731 14.85 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97472 1.0731 14.85 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13692000 6889700 6802300 0 0 0 0 0 0 13692000 6889700 6802300 0 0 0 0 0 0 0 0 0 15062 3524 15686 77473;77474 78715;78716;78717 78715 3 IIQAHGGTVDPTFTSR PEQMSDKQLLATWKRIIQAHGGTVDPTFTS IQAHGGTVDPTFTSRCTHLLCESQVSSAYA R I I S R C 1 1 0 1 0 1 0 2 1 2 0 0 0 1 1 1 3 0 0 1 0 0 16 0 1698.8689 Q6ZW49 Q6ZW49 632 647 PAXIP1 PAX-interacting protein 1 yes yes 3 6.7139E-09 99.344 By MS/MS By MS/MS 3 1 0.82052 0.86746 12.122 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76553 0.79851 9.7855 3 1 Median 1.1723 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27808000 15701000 12107000 0 0 0 0 0 0 25734000 14721000 11013000 2074700 980620 1094000 0 0 0 0 0 0 15063 3203 15687 77475;77476;77477;77478 78718;78719;78720;78721;78722;78723 78718 6 IIQEFLSK PAAKKCYLEREQGEKIIQEFLSKVKQMPFT EREQGEKIIQEFLSKVKQMPFTEMSEENIT K I I S K V 0 0 0 0 0 1 1 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 976.55933 P43246 P43246 883 890 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.0038087 85.212 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 3 1 1 1 1.027 1.0117 39.086 8 Median 1.0655 1.0267 NaN 1 0 Median 1.2297 1.0417 NaN 1 0 Median 0.93301 0.95908 23.38 3 0 Median 1.2683 1.112 NaN 1 0 Median 0.33237 0.3513 NaN 1 0 Median 1.1988 0.99686 NaN 1 0 Median 86944000 42152000 44792000 21791000 10942000 10850000 9317400 4086500 5231000 42410000 20914000 21497000 11575000 5088000 6487200 892340 681310 211030 957550 440880 516680 15064 2324 15688 77479;77480;77481;77482;77483;77484;77485;77486 78724;78725;78726;78727;78728;78729 78729 6 IIQEVEENPDLR MGPKRRQLTFREKSRIIQEVEENPDLRKGE KSRIIQEVEENPDLRKGEIARRFNIPPSTL R I I L R K 0 1 1 1 0 1 3 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1453.7413 P07199 P07199 16 27 CENPB Major centromere autoantigen B yes yes 2 6.2921E-15 177.06 By MS/MS By MS/MS By MS/MS 2 2 1 0.81847 0.80263 9.6401 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84224 0.87037 4.0512 2 2 Median NaN NaN NaN 0 0 Median 0.71504 0.72136 1.1761 2 0 Median 0.98653 0.80263 NaN 1 0 Median 34434000 17762000 16672000 0 0 0 0 0 0 12774000 6257100 6516700 0 0 0 19578000 10586000 8992500 2082100 919370 1162700 15065 1882 15689 77487;77488;77489;77490;77491 78730;78731;78732;78733;78734;78735;78736 78730 7 IIQFNPGPEK YSQASEWAAKYIRNRIIQFNPGPEKYFTLG YIRNRIIQFNPGPEKYFTLGLPTGSTPLGC R I I E K Y 0 0 1 0 0 1 1 1 0 2 0 1 0 1 2 0 0 0 0 0 0 0 10 0 1141.6132 P46926;D6RFF8;D6RAY7;D6R9P4;D6R917;D6RB13 P46926 24 33 GNPDA1 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase yes no 2 0.00033468 87.308 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.59748 0.51867 41.561 4 Median 0.77995 0.70659 NaN 1 0 Median 0.93454 0.78561 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41371 0.34998 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4577 0.38073 NaN 1 0 Median 68326000 36033000 32294000 54040000 28622000 25418000 10131000 4781300 5350000 0 0 0 1720200 994830 725380 0 0 0 2434500 1634300 800160 15066 2348 15690 77492;77493;77494;77495 78737;78738;78739;78740;78741 78737 5 IIQGQGVDEPLSETGFK LTVVRHGETRFNKEKIIQGQGVDEPLSETG QGQGVDEPLSETGFKQAAAAGIFLNNVKFT K I I F K Q 0 0 0 1 0 2 2 3 0 2 1 1 0 1 1 1 1 0 0 1 0 0 17 0 1816.9207 Q9NQ88 Q9NQ88 21 37 TIGAR Fructose-2,6-bisphosphatase TIGAR yes yes 2 1.8944E-07 84.289 By MS/MS By MS/MS By MS/MS 2 2 1 1.0644 0.96359 13.883 5 Median 0.98186 0.91233 11.949 2 2 Median 1.2818 1.0819 16.382 2 0 Median 0.96473 0.90533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39902000 19251000 20651000 24411000 11741000 12670000 6283700 2947300 3336400 9207300 4562400 4644800 0 0 0 0 0 0 0 0 0 15067 4061 15691 77496;77497;77498;77499;77500 78742;78743;78744;78745;78746 78743 5 IIQHLVPASFR SGCPRNSTFTEHLYRIIQHLVPASFRLQMT HLYRIIQHLVPASFRLQMTIENMNHLKFIP R I I F R L 1 1 0 0 0 1 0 0 1 2 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1279.7401 Q9BTE3 Q9BTE3 409 419 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2;3 0.00016988 94.692 By MS/MS By MS/MS By matching By matching 2 2 2 2 0.96489 0.86216 10.644 8 Median 0.87425 0.82477 17.157 2 0 Median 0.99547 0.86216 0.12334 2 0 Median 0.842 0.89253 15.502 2 0 Median 1.0338 0.88026 13.677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73932000 37642000 36290000 56501000 29542000 26959000 10256000 4457000 5799500 6460500 3255100 3205400 713460 387410 326050 0 0 0 0 0 0 15068 3825 15692 77501;77502;77503;77504;77505;77506;77507;77508 78747;78748;78749;78750;78751;78752 78749 6 IIQLIEGK MNPDAVLRVGGAGNKIIQLIEGKASAYVFA VGGAGNKIIQLIEGKASAYVFASPGCKKWD K I I G K A 0 0 0 0 0 1 1 1 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 912.56442 O95861;A6NF51 O95861 225 232 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 2 0.0035475 89.55 By MS/MS By MS/MS 2 4 1.1247 1.0069 7.6598 6 Median 1.0722 1.0435 5.1487 2 0 Median 1.1832 0.99722 9.3119 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22627000 10209000 12418000 8168500 4144500 4024000 14459000 6064500 8394400 0 0 0 0 0 0 0 0 0 0 0 0 15069 1799 15693 77509;77510;77511;77512;77513;77514 78753;78754;78755;78756 78756 4 IIQLLDDYPK PREDRATWKSNYFLKIIQLLDDYPKCFIVG NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ K I I P K C 0 0 0 2 0 1 0 0 0 2 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1216.6703 P05388;F8VU65;F8VWS0;G3V210;F8VQY6;F8VRK7;Q8NHW5;F8VS58;F8VZS0 P05388 17 26 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.00038066 101.64 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 4 1 1 3 2 1.0823 0.96096 16.97 12 Median 0.97985 0.88651 NaN 1 1 Median 1.0761 0.91646 13.059 4 0 Median 1.0101 0.9734 NaN 1 0 Median 1.1562 0.97418 NaN 1 0 Median 1.0602 1.0632 31.462 3 0 Median 1.2797 1.0336 13.34 2 0 Median 221680000 106690000 114990000 86639000 42370000 44269000 72779000 35005000 37774000 25579000 12131000 13449000 3063000 1364400 1698600 28279000 13452000 14828000 5337000 2368800 2968200 15070 1865 15694 77515;77516;77517;77518;77519;77520;77521;77522;77523;77524;77525;77526 78757;78758;78759;78760;78761;78762;78763;78764;78765 78765 9 IIQQAGQVWFPDSAFK LSIPADPANLDSEAKIIQQAGQVWFPDSAF IQQAGQVWFPDSAFKTYQAIKDFNREGLPL K I I F K T 2 0 0 1 0 3 0 1 0 2 0 1 0 2 1 1 0 1 0 1 0 0 16 0 1833.9414 Q13085;Q59FY4 Q13085 2010 2025 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.00012697 65.574 By MS/MS By matching 1 1 0.76682 0.7249 15.068 2 Median 0.80464 0.8064 NaN 1 0 Median 0.73079 0.65164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13061000 7601800 5459300 12724000 7386900 5337000 337220 214900 122330 0 0 0 0 0 0 0 0 0 0 0 0 15071 2784 15695 77527;77528 78766;78767 78767 2 IIQQETLQLINSNEPGVIMFK ERFLGSVIMRRHLQRIIQQETLQLINSNEP LQLINSNEPGVIMFKTDALKCRVALSPKTN R I I F K T 0 0 2 0 0 3 2 1 0 4 2 1 1 1 1 1 1 0 0 1 0 0 21 0 2414.2879 O60244;H7C3E5 O60244 1223 1243 MED14 Mediator of RNA polymerase II transcription subunit 14 yes no 3 0.057448 7.8971 By MS/MS 1 0.78773 0.84161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78773 0.84161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1368300 739070 629210 0 0 0 0 0 0 1368300 739070 629210 0 0 0 0 0 0 0 0 0 15072 1606 15696 77529 78768 78768 1 IIQQGLIR APRASVPSVQIQGQRIIQQGLIRVANVPNT VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ R I I I R V 0 1 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 0 8 0 939.58655 Q86YP4 Q86YP4 286 293 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.0032511 99.919 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 0.94429 0.91074 23.962 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92847 0.94205 NaN 1 0 Median 0.94429 0.81212 32.579 3 0 Median 1.0422 1.0676 22.473 2 0 Median 1.1449 0.98669 20.664 3 0 Plateau 31794000 15259000 16534000 0 0 0 0 0 0 16187000 7927300 8259400 2846000 1455600 1390400 8493200 3837600 4655600 4267700 2038900 2228800 15073 3309 15697 77530;77531;77532;77533;77534;77535;77536;77537;77538 78769;78770;78771;78772;78773 78770 5 IIQTAQTTPVQTVTIVQQAPLGQHQLPIK PIPAIGHATLGTASRIIQTAQTTPVQTVTI IVQQAPLGQHQLPIKTVTQNGTHVASVPTA R I I I K T 2 0 0 0 0 7 0 1 1 4 2 1 0 0 3 0 5 0 0 3 0 0 29 0 3150.7765 Q01167;I3L4U8 Q01167 545 573 FOXK2 Forkhead box protein K2 yes no 3;4 6.2128E-09 39.783 By MS/MS By matching 2 1 0.65479 0.65754 3.0255 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62957 0.64255 3.2616 2 0 Median 0.75318 0.66472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23810000 13964000 9845900 0 0 0 0 0 0 23490000 13784000 9706700 319220 180080 139140 0 0 0 0 0 0 15074 2684 15698 77539;77540;77541 78774;78775;78776 78774 3 IIQTPGLWESENQNK TCDGVQCAFEELVEKIIQTPGLWESENQNK IIQTPGLWESENQNKGVKLSHREEGQGGGA K I I N K G 0 0 2 0 0 2 2 1 0 2 1 1 0 0 1 1 1 1 0 0 0 0 15 0 1755.8792 Q9NP72;A0A087X163;Q5W0J0 Q9NP72 169 183 RAB18 Ras-related protein Rab-18 yes no 2 3.5473E-10 164.65 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.9595 0.80922 42.283 5 Median 1.0393 0.96139 NaN 1 0 Median 0.93005 0.79666 2.2129 2 0 Median 1.6508 1.5703 NaN 1 1 Median 0.59516 0.48501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40816000 18469000 22347000 32570000 15423000 17147000 4437400 2363600 2073800 3571100 544670 3026400 238180 138130 100040 0 0 0 0 0 0 15075 4041 15699 77542;77543;77544;77545;77546 78777;78778;78779 78778 3 IIQTVGGGAVQER TATQNTKNGVDVLPKIIQTVGGGAVQERAP PKIIQTVGGGAVQERAPELDGGGPTEQDKS K I I E R A 1 1 0 0 0 2 1 3 0 2 0 0 0 0 0 0 1 0 0 2 0 0 13 0 1326.7256 H7C1F9;Q2PPJ7 H7C1F9 150 162 RALGAPA2 Ral GTPase-activating protein subunit alpha-2 yes no 2 7.5018E-05 100.88 By MS/MS 1 0.55558 0.61699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55558 0.61699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2983900 2022900 960990 0 0 0 0 0 0 2983900 2022900 960990 0 0 0 0 0 0 0 0 0 15076 1259 15700 77547 78780 78780 1 IIQVGNR PFRSPSWYGIPRLEKIIQVGNRIKFVIKRP YGIPRLEKIIQVGNRIKFVIKRPELLTHST K I I N R I 0 1 1 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 798.47119 P78347;A0A494C1K3;A0A494C0Q7 P78347 527 533 GTF2I General transcription factor II-I yes no 2 0.0087724 85.306 By MS/MS By matching By MS/MS 1 2 1 1.4937 1.2757 12.761 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0295 1.1325 NaN 1 0 Median 1.4937 1.2757 10.498 2 0 Median NaN NaN NaN 0 0 Median 1.8119 1.4894 NaN 1 0 Median 5901800 2724700 3177100 0 0 0 0 0 0 4247900 2043100 2204900 1023000 440150 582850 0 0 0 630860 241460 389400 15077 2642 15701 77548;77549;77550;77551 78781;78782;78783;78784 78782 4 IIRDEQYTALSNMPK PCFDEPAFKATFIIKIIRDEQYTALSNMPK IIRDEQYTALSNMPKKSSVVLDDGLVQDEF K I I P K K 1 1 1 1 0 1 1 0 0 2 1 1 1 0 1 1 1 0 1 0 0 0 15 1 1777.9033 Q9UIQ6 Q9UIQ6 319 333 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 3 0.00012136 62.861 By MS/MS By matching By matching 2 1 1 0.8356 0.85347 29.242 4 Median 0.8356 0.85347 4.4649 2 0 Median 1.1519 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67767 0.54215 NaN 1 0 Median 22609000 11488000 11120000 19770000 10045000 9724200 2461600 1239900 1221700 0 0 0 0 0 0 0 0 0 377330 203010 174320 15078 4292 15702 77552;77553;77554;77555 78785;78786 78786 2 IIRPFFLK MAPSPSNGAELLYKRIIRPFFLKHESQMDS AELLYKRIIRPFFLKHESQMDSVVKDLKDK R I I L K H 0 1 0 0 0 0 0 0 0 2 1 1 0 2 1 0 0 0 0 0 0 0 8 1 1032.6484 Q00765;E2QRG8 Q00765 140 147 REEP5 Receptor expression-enhancing protein 5;Receptor expression-enhancing protein yes no 2 0.0111 114.19 By MS/MS By matching 1 2 1.0963 1.0744 14.641 3 Median 1.0963 1.0744 NaN 1 0 Median 1.1224 0.99069 19.618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42325000 20271000 22053000 38225000 18257000 19968000 4099900 2014300 2085600 0 0 0 0 0 0 0 0 0 0 0 0 15079 2678 15703 77556;77557;77558 78787 78787 1 IISAASEGGANVFTVSYFK ETLINKGFVEIQTPKIISAASEGGANVFTV ASEGGANVFTVSYFKNNAYLAQSPQLYKQM K I I F K N 3 0 1 0 0 0 1 2 0 2 0 1 0 2 0 3 1 0 1 2 0 0 19 0 1959.9942 P14868 P14868 223 241 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 1.8092E-06 62.14 By MS/MS 1 1.0099 1.0028 NaN 1 Median 1.0099 1.0028 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4082400 1894800 2187600 4082400 1894800 2187600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15080 2012 15704 77559 78788 78788 1 IISAISELLER EDDFWADVSTLHVQKIISAISELLERLKSY HVQKIISAISELLERLKSYGEDGTAAKHLF K I I E R L 1 1 0 0 0 0 2 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1242.7184 Q9NU22 Q9NU22 4574 4584 MDN1 Midasin yes yes 2 0.00059752 66.435 By matching By MS/MS By MS/MS 1 1 2 1.1332 1.1143 56.133 4 Median 3.1465 3.1862 NaN 1 0 Median 1.1445 0.94889 NaN 1 0 Median 1.0155 1.1143 11.681 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14368000 5845300 8522300 2213200 674400 1538800 7004800 2655100 4349700 5149500 2515800 2633700 0 0 0 0 0 0 0 0 0 15081 4112 15705 77560;77561;77562;77563 78789;78790 78790 2 IISDNLTYCK RCREWYGWHFPELGKIISDNLTYCKCLQKV PELGKIISDNLTYCKCLQKVGDRKNYASAK K I I C K C 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 1 1 0 1 0 0 0 10 0 1225.6013 Q9Y2X3;H7BZ72 Q9Y2X3 197 206 NOP58 Nucleolar protein 58 yes no 2 0.00041856 75.378 By matching By MS/MS 1 1 0.72712 0.75115 52.614 2 Median 0.46338 0.51779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.141 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median 20332000 10041000 10290000 3860300 2729200 1131100 0 0 0 0 0 0 0 0 0 16471000 7312200 9159100 0 0 0 15082 4396 15706 77564;77565 78791;78792 78792 2 IISEGIWSLIR GTKQITEENFQLCRRIISEGIWSLIREKKQ LCRRIISEGIWSLIREKKQEFCEKNYGKIL R I I I R E 0 1 0 0 0 0 1 1 0 4 1 0 0 0 0 2 0 1 0 0 0 0 11 0 1285.7394 Q9NZJ4 Q9NZJ4 2427 2437 SACS Sacsin yes yes 2 0.00072146 88.496 By MS/MS 1 1.2909 1.0445 NaN 1 Median NaN NaN NaN 0 0 Median 1.2909 1.0445 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11745000 5338700 6406700 0 0 0 11745000 5338700 6406700 0 0 0 0 0 0 0 0 0 0 0 0 15083 4189 15707 77566 78793 78793 1 IISIFSGTEK KPLPSVPEEKKPRHKIISIFSGTEKGSKKK KPRHKIISIFSGTEKGSKKKEKERPEISPP K I I E K G 0 0 0 0 0 0 1 1 0 3 0 1 0 1 0 2 1 0 0 0 0 0 10 0 1093.6019 Q13177 Q13177 53 62 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 2 0.0035742 56.258 By MS/MS 1 1.1661 1.1941 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1661 1.1941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135900 1354200 1781600 0 0 0 0 0 0 3135900 1354200 1781600 0 0 0 0 0 0 0 0 0 15084 2794 15708 77567 78794 78794 1 IISKIENHEGVR HEVRKVLGEKGKNIKIISKIENHEGVRRFD NIKIISKIENHEGVRRFDEILEASDGIMVA K I I V R R 0 1 1 0 0 0 2 1 1 3 0 1 0 0 0 1 0 0 0 1 0 0 12 1 1393.7678 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 267 278 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3 0.00018393 74.76 By MS/MS By MS/MS 5 3 1.1878 1.1688 16.43 8 Median 1.1974 1.2319 5.6643 5 0 Median 1.1323 1.0382 18.452 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24052000 10466000 13586000 19862000 8583900 11278000 4190400 1881700 2308700 0 0 0 0 0 0 0 0 0 0 0 0 15085 2005;1237 15709 77568;77569;77570;77571;77572;77573;77574;77575 78795;78796;78797;78798;78799;78800;78801;78802 78796 8 IISLDLPVAEVYK LLEDDSGMELLVNNKIISLDLPVAEVYKKV NKIISLDLPVAEVYKKVWCTTNEGEPMRIV K I I Y K K 1 0 0 1 0 0 1 0 0 2 2 1 0 0 1 1 0 0 1 2 0 0 13 0 1458.8334 Q5T4S7;X6R960 Q5T4S7 4414 4426 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0044124 40.727 By MS/MS By matching By matching 2 2 1 1.002 0.96475 41.014 5 Median 0.94221 0.92124 6.5255 2 0 Median 0.95456 0.85698 37.548 2 0 Median 1.7921 1.9935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15422000 7614100 7808000 4442700 2268300 2174300 10582000 5189000 5393400 397080 156750 240330 0 0 0 0 0 0 0 0 0 15086 3089 15710 77576;77577;77578;77579;77580 78803 78803 1 IISLDLPVAEVYKK LLEDDSGMELLVNNKIISLDLPVAEVYKKV KIISLDLPVAEVYKKVWCTTNEGEPMRIVY K I I K K V 1 0 0 1 0 0 1 0 0 2 2 2 0 0 1 1 0 0 1 2 0 0 14 1 1586.9283 Q5T4S7;X6R960 Q5T4S7 4414 4427 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.047227 12.555 By MS/MS By matching 2 2 0.94792 0.92005 19.037 4 Median 0.82134 0.87568 32.567 2 0 Median 0.94792 0.92005 1.4626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10772000 5166200 5605800 5658100 2652200 3005900 5114000 2514000 2600000 0 0 0 0 0 0 0 0 0 0 0 0 15087 3089 15711 77581;77582;77583;77584 78804 78804 1 IISLETYNLLR YVRRRLTAEDLFEARIISLETYNLLREGTR FEARIISLETYNLLREGTRSLREALEAESA R I I L R E 0 1 1 0 0 0 1 0 0 2 3 0 0 0 0 1 1 0 1 0 0 0 11 0 1333.7606 Q15149;H0YDN1 Q15149 3794 3804 PLEC Plectin yes no 2 1.9577E-06 162.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 2 3 1.4929 1.2561 18.145 15 Median 1.4781 1.4239 17.728 2 1 Median 1.5351 1.2625 26.686 4 2 Median 1.3781 1.4962 26.455 2 0 Median 1.5201 1.3209 8.5329 2 0 Median 1.4313 1.5094 6.6504 2 1 Median 1.4929 1.222 2.7829 3 0 Median 97084000 41911000 55172000 42153000 18151000 24002000 29665000 12877000 16787000 10188000 4642400 5545900 985430 396010 589430 6621300 2936200 3685100 7470800 2908900 4561900 15088 2933 15712 77585;77586;77587;77588;77589;77590;77591;77592;77593;77594;77595;77596;77597;77598;77599 78805;78806;78807;78808;78809;78810;78811;78812;78813;78814;78815;78816;78817;78818;78819;78820;78821 78806 17 IISNASCTTNCLAPLAK FVMGVNHEKYDNSLKIISNASCTTNCLAPL SNASCTTNCLAPLAKVIHDNFGIVEGLMTT K I I A K V 3 0 2 0 2 0 0 0 0 2 2 1 0 0 1 2 2 0 0 0 0 0 17 0 1832.9125 P04406;E7EUT5 P04406 146 162 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 2.4791E-07 93.623 By MS/MS By MS/MS 2 2 0.9922 0.85436 6.691 4 Median 0.9594 0.90045 8.0058 2 0 Median 0.9922 0.83542 3.7446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97910000 47445000 50465000 17516000 8255600 9260200 80395000 39190000 41205000 0 0 0 0 0 0 0 0 0 0 0 0 15089 1850 15713 77600;77601;77602;77603 78822;78823;78824;78825 78822 4 IISNLFLGR ATQNAPRLLQDSQKKIISNLFLGRAGSATV QDSQKKIISNLFLGRAGSATVLSGSIAGLE K I I G R A 0 1 1 0 0 0 0 1 0 2 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1031.6128 Q92614;A0A0D9SFK2 Q92614 969 977 MYO18A Unconventional myosin-XVIIIa yes no 2 0.0051955 72.789 By MS/MS 1 1.7098 1.8914 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7098 1.8914 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3902400 1506200 2396200 0 0 0 0 0 0 3902400 1506200 2396200 0 0 0 0 0 0 0 0 0 15090 267 15714 77604 78826 78826 1 IISNVPADSLIR FLPHKYDVKLQNEDKIISNVPADSLIRTER EDKIISNVPADSLIRTERPPNKEIVRYFIR K I I I R T 1 1 1 1 0 0 0 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1296.7402 Q9UIG0 Q9UIG0 232 243 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 4.3444E-06 104.22 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.7869 0.78981 27.196 6 Median 0.45876 0.46313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7869 0.84504 0.44976 2 0 Median 1.2089 1.0437 NaN 1 0 Median 0.7296 0.7402 NaN 1 0 Median 0.8915 0.74054 NaN 1 0 Median 51462000 28673000 22789000 1555300 1174900 380370 0 0 0 7128800 3923900 3204900 1215600 554120 661480 38220000 21193000 17027000 3342000 1826500 1515500 15091 4290 15715 77605;77606;77607;77608;77609;77610 78827;78828;78829;78830;78831;78832;78833 78830 7 IISPTLLAEYAYVLR LFPDPHFKRTKHKWRIISPTLLAEYAYVLR IISPTLLAEYAYVLRVGGLVYTITDVLELH R I I L R V 2 1 0 0 0 0 1 0 0 2 3 0 0 0 1 1 1 0 2 1 0 0 15 0 1720.9764 Q9UBP6;H0YIH0;H0YHU4 Q9UBP6 175 189 METTL1 tRNA (guanine-N(7)-)-methyltransferase yes no 2 0.048135 23.376 By MS/MS By matching By matching 1 1 1 1.0408 0.99616 7.7962 3 Median 1.0364 0.99616 NaN 1 0 Median 1.0408 0.89658 NaN 1 0 Median 1.0608 1.044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 923930 430110 493830 717360 332960 384400 87480 45275 42205 119090 51872 67217 0 0 0 0 0 0 0 0 0 15092 4242 15716 77611;77612;77613 78834 78834 1 IISQLLK LRERTEQEKLRIHQKIISQLLKEEDKLHTL EKLRIHQKIISQLLKEEDKLHTLANSSSLC K I I L K E 0 0 0 0 0 1 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 7 0 813.53239 Q9P2P6 Q9P2P6 4376 4382 STARD9 StAR-related lipid transfer protein 9 yes yes 2 0.02182 58.661 By MS/MS By matching 1 1 1.1173 1.0428 5.5779 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0755 1.0848 NaN 1 0 Median 1.1607 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13433000 6406800 7026400 0 0 0 0 0 0 13244000 6318700 6924900 189650 88116 101540 0 0 0 0 0 0 15093 4228 15717 77614;77615 78835 78835 1 IISQVVDPK QQVLKSGMLESGIDRIISQVVDPKINHTFR ESGIDRIISQVVDPKINHTFRPQVEKAVHE R I I P K I 0 0 0 1 0 1 0 0 0 2 0 1 0 0 1 1 0 0 0 2 0 0 9 0 997.5808 Q8NFC6;C9J8U9;H7C5I4;Q96IK1 Q8NFC6 134 142 BOD1L1;BOD1 Biorientation of chromosomes in cell division protein 1-like 1;Biorientation of chromosomes in cell division protein 1 yes no 2 0.010372 48.283 By matching By MS/MS By matching 1 1 2 1.087 1.0044 5.1874 4 Median NaN NaN NaN 0 0 Median 1.2073 1.0526 NaN 1 0 Median 0.87325 0.93346 NaN 1 0 Median 1.087 1.0044 2.6149 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17835000 9249100 8585700 0 0 0 4094200 1909600 2184600 12048000 6468600 5579400 1692500 870770 821700 0 0 0 0 0 0 15094 3434 15718 77616;77617;77618;77619 78836;78837 78837 2 IISSDRDLLAVVFYGTEK FDMSIQCIQSVYISKIISSDRDLLAVVFYG SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE K I I E K D 1 1 0 2 0 0 1 1 0 2 2 1 0 1 0 2 1 0 1 2 0 0 18 1 2025.0783 P12956;B1AHC9 P12956 75 92 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 9.7367E-05 40.844 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.2483 1.2727 10.096 8 Median 1.2623 1.274 11.362 2 0 Median 1.3153 1.2047 3.8207 2 0 Median 1.0929 1.2019 20.9 2 0 Median NaN NaN NaN 0 0 Median 1.1822 1.3088 NaN 1 0 Median 1.471 1.3383 NaN 1 0 Median 28317000 12875000 15443000 10067000 4865100 5202300 11629000 4921700 6706900 4100200 2018100 2082100 0 0 0 2315300 994970 1320400 205780 74766 131010 15095 1985 15719 77620;77621;77622;77623;77624;77625;77626;77627 78838;78839;78840;78841;78842;78843;78844 78840 7 IISSDRDLLAVVFYGTEKDK FDMSIQCIQSVYISKIISSDRDLLAVVFYG RDLLAVVFYGTEKDKNSVNFKNIYVLQELD K I I D K N 1 1 0 3 0 0 1 1 0 2 2 2 0 1 0 2 1 0 1 2 0 0 20 2 2268.2002 P12956;B1AHC9 P12956 75 94 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 8.8955E-07 50.425 By MS/MS 1 1.6409 1.561 NaN 1 Median NaN NaN NaN 0 0 Median 1.6409 1.561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5069500 1971600 3097900 0 0 0 5069500 1971600 3097900 0 0 0 0 0 0 0 0 0 0 0 0 15096 1985 15720 77628 78845;78846 78845 2 IISSIEQK VAYKNVIGARRASWRIISSIEQKEENKGGE ARRASWRIISSIEQKEENKGGEDKLKMIRE R I I Q K E 0 0 0 0 0 1 1 0 0 3 0 1 0 0 0 2 0 0 0 0 0 0 8 0 916.52295 P62258;B4DJF2;I3L3T1;K7EIT4 P62258 62 69 YWHAE 14-3-3 protein epsilon yes no 2 0.0034523 95.352 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 1.133 0.97082 20.343 11 Median 0.99792 0.93665 5.0665 2 0 Median 1.1426 0.95933 1.2283 2 0 Median 1.0692 1.0128 5.8353 2 0 Median 1.2113 1.0087 5.7601 2 0 Median 0.88477 0.93517 NaN 1 0 Median 1.6797 1.4046 41.745 2 0 Median 84038000 39227000 44811000 35981000 17249000 18731000 22208000 10248000 11960000 14501000 7004700 7496500 7212300 3175900 4036400 104600 61824 42772 4031400 1486900 2544500 15097 2576 15721 77629;77630;77631;77632;77633;77634;77635;77636;77637;77638;77639 78847;78848;78849;78850;78851;78852;78853;78854;78855;78856;78857 78857 11 IISSIEQKEENK VAYKNVIGARRASWRIISSIEQKEENKGGE SWRIISSIEQKEENKGGEDKLKMIREYRQM R I I N K G 0 0 1 0 0 1 3 0 0 3 0 2 0 0 0 2 0 0 0 0 0 0 12 1 1416.746 P62258;B4DJF2;I3L3T1;K7EIT4 P62258 62 73 YWHAE 14-3-3 protein epsilon yes no 2;3 1.4755E-05 155.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 3 4 1 2 1.038 0.95888 9.1724 17 Median 0.9901 0.95888 17.963 3 0 Median 1.0816 0.98006 6.9153 4 0 Median 0.93373 0.95978 10.578 3 0 Median 1.0681 0.94936 4.9277 4 0 Median 1.0169 1.0502 NaN 1 0 Median 1.0244 0.88908 1.8694 2 0 Median 129510000 61658000 67851000 36132000 17479000 18653000 46499000 22034000 24466000 25110000 12012000 13098000 20416000 9486300 10930000 301750 129910 171850 1048800 517150 531660 15098 2576 15722 77640;77641;77642;77643;77644;77645;77646;77647;77648;77649;77650;77651;77652;77653;77654;77655;77656 78858;78859;78860;78861;78862;78863;78864;78865;78866;78867;78868;78869;78870;78871;78872;78873;78874;78875;78876;78877;78878;78879;78880;78881;78882 78869 25 IISSIEQKEENKGGEDK VAYKNVIGARRASWRIISSIEQKEENKGGE SSIEQKEENKGGEDKLKMIREYRQMVETEL R I I D K L 0 0 1 1 0 1 4 2 0 3 0 3 0 0 0 2 0 0 0 0 0 0 17 2 1902.9535 P62258;B4DJF2;I3L3T1;K7EIT4 P62258 62 78 YWHAE 14-3-3 protein epsilon yes no 2;3;4 5.5188E-18 144.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 5 3 0.99652 1.0156 15.567 19 Plateau 0.96353 1.012 7.325 4 0 Median 1.0608 1.038 5.5033 4 0 Median 0.96498 1.0285 11.716 3 0 Median 1.0005 0.91998 5.8939 5 2 Median NaN NaN NaN 0 0 Median 0.87935 0.7547 25.692 3 0 Median 145040000 69479000 75564000 72888000 35543000 37345000 39985000 18006000 21979000 10318000 5261200 5056800 20481000 10019000 10462000 0 0 0 1371300 649390 721910 15099 2576 15723 77657;77658;77659;77660;77661;77662;77663;77664;77665;77666;77667;77668;77669;77670;77671;77672;77673;77674;77675;77676;77677 78883;78884;78885;78886;78887;78888;78889;78890;78891;78892;78893;78894;78895;78896;78897;78898;78899;78900;78901;78902;78903;78904 78887 22 IISSNQELIYEGR NTATIFHELVYKQTKIISSNQELIYEGRRL TKIISSNQELIYEGRRLVLEPGRLAQHFPK K I I G R R 0 1 1 0 0 1 2 1 0 3 1 0 0 0 0 2 0 0 1 0 0 0 13 0 1520.7835 A0A494C0R4;A0A494C0A8;A0A494C1M6;A0A494C0X2;A0A494C167;A0A494C148;A0A494C045;Q9UHD2;A0A494C079 A0A494C0R4 304 316 TBK1 Serine/threonine-protein kinase TBK1 yes no 2 1.8484E-05 94.801 By MS/MS 1 0.66523 0.63611 NaN 1 Median 0.66523 0.63611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5280500 3400200 1880300 5280500 3400200 1880300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15100 456 15724 77678 78905;78906 78906 2 IISVNSVDLR GGPADLSGELRKGDRIISVNSVDLRAASHE RKGDRIISVNSVDLRAASHEQAAAALKNAG R I I L R A 0 1 1 1 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1114.6346 Q12959;A0A590UK81;A0A0C4DFT3;A0A590UKA8;A0A590UJC5;A0A590UJR5;A0A590UJ08;A0A590UJ81;A0A590UJ18;A0A590UJ68;A0A590UJS9;A0A590UJX2;A0A590UK48;A0A590UJR4;A0A590UJ29;A0A590UJD9;A0A590UJ64;E7EQD7;A0A590UK02;A0A590UK70;A0A590UJL2;A0A590UJ25 Q12959 512 521 DLG1 Disks large homolog 1 yes no 2 0.034259 44.349 By MS/MS By matching By MS/MS By matching 1 2 2 3 1.188 1.054 20.619 8 Median 0.95884 0.92713 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2446 1.2702 14.382 2 0 Median 1.188 1.0027 0.13446 2 0 Median NaN NaN NaN 0 0 Median 1.3282 1.1406 28.235 3 0 Plateau 17196000 7931400 9264900 4925300 2753700 2171600 0 0 0 9178600 3948800 5229900 1549900 708800 841070 0 0 0 1542600 520180 1022400 15101 230 15725 77679;77680;77681;77682;77683;77684;77685;77686 78907;78908 78908 2 IISVTPVK AAETGVSENEENPVRIISVTPVKNIDPVKN NEENPVRIISVTPVKNIDPVKNKEINSDQA R I I V K N 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 8 0 855.54295 Q29RF7 Q29RF7 1204 1211 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0078694 65.252 By matching By MS/MS By MS/MS By matching 1 1 3 1 0.97031 0.92523 14.003 6 Median NaN NaN NaN 0 0 Median 0.83653 0.71961 NaN 1 0 Median 0.85166 0.90858 NaN 1 0 Median 1.1522 1.0476 6.2725 3 0 Median 0.83342 0.88035 NaN 1 0 Median NaN NaN NaN 0 0 Median 27400000 13753000 13647000 0 0 0 4018000 2109900 1908000 16725000 8543100 8182200 4155900 1738300 2417700 2500500 1361300 1139300 0 0 0 15102 3003 15726 77687;77688;77689;77690;77691;77692 78909;78910;78911;78912 78910 4 IISYAQGFMLLR KSFLEDIRKALYASKIISYAQGFMLLRQAA ASKIISYAQGFMLLRQAATEFGWTLNYGGI K I I L R Q 1 1 0 0 0 1 0 1 0 2 2 0 1 1 0 1 0 0 1 0 0 0 12 0 1410.7693 P52209;K7ELN9 P52209 332 343 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 3.6272E-06 107.57 By MS/MS By MS/MS By matching 1 1 1 1.5688 1.3786 11.862 3 Median 1.3152 1.2602 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5926 1.5942 NaN 1 1 Median 1.5688 1.3786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11782000 5072100 6710100 10170000 4452600 5717000 0 0 0 1536900 591670 945190 75720 27836 47884 0 0 0 0 0 0 15103 2447 15727 77693;77694;77695 78913;78914;78915 78913 3 IITAESGKPLK KWYNLMIQNKDDLARIITAESGKPLKEAHG DLARIITAESGKPLKEAHGEILYSAFFLEW R I I L K E 1 0 0 0 0 0 1 1 0 2 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1155.6863 P51649 P51649 141 151 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes yes 2 0.024465 72.643 By MS/MS 2 1.3094 1.2307 NaN 1 Median NaN NaN NaN 0 0 Median 1.3094 1.2307 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3029600 1258400 1771200 0 0 0 3029600 1258400 1771200 0 0 0 0 0 0 0 0 0 0 0 0 15104 2439 15728 77696;77697 78916;78917 78916 2 IITDVIGNPEEER DFIQEWLRSQRRDLKIITDVIGNPEEERRA LKIITDVIGNPEEERRAAFYHQPWAQEAVG K I I E R R 0 1 1 1 0 0 3 1 0 3 0 0 0 0 1 0 1 0 0 1 0 0 13 0 1483.7518 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 406 418 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 1.5038E-06 162.36 By MS/MS By MS/MS 1 3 0.66127 0.65877 92.966 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66127 0.65877 NaN 1 0 Median 0.37115 0.33908 119.77 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18479000 10627000 7852200 0 0 0 0 0 0 16438000 9443200 6994800 2040800 1183400 857410 0 0 0 0 0 0 15105 655 15729 77698;77699;77700;77701 78918;78919;78920 78918 3 IITDVIGNPEEERR DFIQEWLRSQRRDLKIITDVIGNPEEERRA KIITDVIGNPEEERRAAFYHQPWAQEAVGR K I I R R A 0 2 1 1 0 0 3 1 0 3 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1639.8529 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 406 419 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2;3 1.9093E-09 125.48 By MS/MS By MS/MS By MS/MS 2 4 1 1.092 1.0175 25.102 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77134 0.83537 4.1006 2 0 Median 1.2965 1.2004 22.319 4 0 Median 1.2323 1.3343 NaN 1 1 Median NaN NaN NaN 0 0 Median 45526000 19147000 26379000 0 0 0 0 0 0 9963000 5547900 4415100 24282000 9469300 14813000 11281000 4129600 7151300 0 0 0 15106 655 15730 77702;77703;77704;77705;77706;77707;77708 78921;78922;78923;78924;78925;78926;78927;78928 78928 8 IITEGASILR HLMKEGRLEESVALRIITEGASILRQEKNL SVALRIITEGASILRQEKNLLDIDAPVTVC R I I L R Q 1 1 0 0 0 0 1 1 0 3 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1071.6288 Q08209;E9PPC8;E9PK68 Q08209 64 73 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase yes no 2 0.00041199 99.802 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0919 1.0332 13.5 5 Median 1.0519 0.99793 NaN 1 0 Median 1.2356 1.0785 13.797 2 0 Median 0.98648 1.0332 NaN 1 0 Median 1.5457 1.3424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25107000 11722000 13384000 17132000 8361600 8770300 4370300 1833900 2536300 3002300 1279100 1723200 602170 247890 354280 0 0 0 0 0 0 15107 2735 15731 77709;77710;77711;77712;77713 78929;78930;78931;78932 78930 4 IITEGFEAAK LKQADLYISEGLHPRIITEGFEAAKEKALQ GLHPRIITEGFEAAKEKALQFLEEVKVSRE R I I A K E 2 0 0 0 0 0 2 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 10 0 1077.5706 P40227 P40227 118 127 CCT6A T-complex protein 1 subunit zeta yes yes 1;2 6.5469E-09 141.2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 1 1.177 1.0468 34.503 7 Median 1.1344 1.0468 3.046 3 0 Median 1.0979 0.94463 7.2032 2 0 Median NaN NaN NaN 0 0 Median 1.3155 1.1281 NaN 1 0 Median 2.433 2.5159 NaN 1 0 Median NaN NaN NaN 0 0 Median 267320000 122820000 144500000 212180000 100850000 111330000 42822000 19022000 23800000 0 0 0 7908800 2188300 5720500 4413100 761960 3651200 0 0 0 15108 2285 15732 77714;77715;77716;77717;77718;77719;77720;77721;77722;77723 78933;78934;78935;78936;78937;78938;78939;78940;78941 78934 8 IITEGFEAAKEK LKQADLYISEGLHPRIITEGFEAAKEKALQ HPRIITEGFEAAKEKALQFLEEVKVSREMD R I I E K A 2 0 0 0 0 0 3 1 0 2 0 2 0 1 0 0 1 0 0 0 0 0 12 1 1334.7082 P40227 P40227 118 129 CCT6A T-complex protein 1 subunit zeta yes yes 2;3 1.8187E-05 113.44 By MS/MS 2 2.0911 1.9523 52.279 2 Median 2.0911 1.9523 52.279 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48092000 13914000 34178000 48092000 13914000 34178000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15109 2285 15733 77724;77725 78942;78943 78943 2 IITGGAAAQDGR DNPHIGDDSSIFITKIITGGAAAQDGRLRV ITKIITGGAAAQDGRLRVNDCILRVNEVDV K I I G R L 3 1 0 1 0 1 0 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0 12 0 1128.5887 Q12959;A0A590UK81;A0A0C4DFT3;A0A590UKA8;A0A590UJC5;A0A590UJR5;A0A590UJ08;A0A590UJ81;A0A590UJ18;A0A590UJ68;A0A590UJS9;A0A590UJX2;A0A590UK48;A0A590UJR4;A0A590UJ29;A0A590UJD9;A0A590UJ64;E7EQD7;A0A590UK02;A0A590UK70;A0A590UJL2;A0A590UJ25;H7C166;A0A590UJ86;A0A590UJZ4;B4E2H8;A0A590UK52;A0A590UJ95;C9JN61;C9IYP1 Q12959 258 269 DLG1 Disks large homolog 1 yes no 2 0.00062094 66.595 By matching By MS/MS By matching 1 1 1 1.2352 1.0557 14.258 3 Median 1.3085 1.3214 NaN 1 0 Median 1.2352 1.0557 NaN 1 0 Median 0.96066 1.0143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3888400 1643500 2244900 505290 323140 182150 2872000 1050600 1821500 511130 269800 241330 0 0 0 0 0 0 0 0 0 15110 230 15734 77726;77727;77728 78944 78944 1 IITGGAPELAVEGNGPVESNAVLTK FRRCKIPNTVEEAVRIITGGAPELAVEGNG VEGNGPVESNAVLTKAVKRPNEDSDEDEEK R I I T K A 3 0 2 0 0 0 3 4 0 2 2 1 0 0 2 1 2 0 0 3 0 0 25 0 2435.2908 Q12996;E9PLP8;H0YE74 Q12996 658 682 CSTF3 Cleavage stimulation factor subunit 3 yes no 2;3 2.7801E-19 80.061 By matching By MS/MS By matching 1 2 2 0.92961 0.82273 18.558 5 Median 0.92961 0.92502 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6517 0.6507 4.276 2 0 Median 1.0097 0.88422 10.193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76408000 45873000 30535000 1625600 719430 906190 0 0 0 72871000 44269000 28602000 1910900 884310 1026600 0 0 0 0 0 0 15111 2777 15735 77729;77730;77731;77732;77733 78945;78946;78947 78945 3 IITHPNFNGNTLDNDIMLIK IDVLEGNEQFINAAKIITHPNFNGNTLDND NFNGNTLDNDIMLIKLSSPATLNSRVATVS K I I I K L 0 0 4 2 0 0 0 1 1 4 2 1 1 1 1 0 2 0 0 0 0 0 20 0 2282.1729 CON__P00761 CON__P00761 78 97 yes yes 3 2.0889E-15 83.849 By MS/MS By MS/MS 7 1 0.05158 0.050014 121.49 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.05158 0.050014 121.49 7 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137820000 135490000 2330100 0 0 0 0 0 0 130890000 128560000 2330100 0 0 0 6928600 6928600 0 0 0 0 + 15112 737 15736;15737 77734;77735;77736;77737;77738;77739;77740;77741 78948;78949;78950;78951;78952;78953;78954;78955 78954 259 8 IITIPAALQQVK DWDYYIERLGSAIQKIITIPAALQQVKNPV IQKIITIPAALQQVKNPVPRVKHPDWLHKK K I I V K N 2 0 0 0 0 2 0 0 0 3 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1293.802 Q07864;F5H1D6 Q07864 1144 1155 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.0058109 40.045 By MS/MS 1 1.0235 0.96825 NaN 1 Median 1.0235 0.96825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2325300 1169300 1156000 2325300 1169300 1156000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15113 1020 15738 77742 78956;78957 78957 2 IITITGTQDQIQNAQYLLQNSVK ASIKIDEPLEGSEDRIITITGTQDQIQNAQ DQIQNAQYLLQNSVKQYSGKFF________ R I I V K Q 1 0 2 1 0 5 0 1 0 4 2 1 0 0 0 1 3 0 1 1 0 0 23 0 2588.381 P61978 P61978 434 456 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 1.8232E-174 299.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 8 8 5 11 1.1433 1.0283 19.888 41 Median 1.1311 1.0793 7.6042 5 0 Median 1.2988 1.1153 6.3495 4 0 Median 1.0233 1.0292 8.6502 8 0 Median 1.2645 1.0856 17.605 8 2 Median 0.99415 0.98247 4.4578 5 1 Median 1.1739 0.97858 33.575 11 0 Median 1012900000 485880000 527040000 26822000 12245000 14577000 22323000 9517400 12806000 767360000 368130000 399220000 80039000 34157000 45883000 105340000 56607000 48732000 11044000 5224300 5819600 15114 2565 15739 77743;77744;77745;77746;77747;77748;77749;77750;77751;77752;77753;77754;77755;77756;77757;77758;77759;77760;77761;77762;77763;77764;77765;77766;77767;77768;77769;77770;77771;77772;77773;77774;77775;77776;77777;77778;77779;77780;77781;77782;77783 78958;78959;78960;78961;78962;78963;78964;78965;78966;78967;78968;78969;78970;78971;78972;78973;78974;78975;78976;78977;78978;78979;78980;78981;78982;78983;78984;78985;78986;78987;78988 78966 31 IITLAGPTNAIFK SGARINISEGNCPERIITLAGPTNAIFKAF ERIITLAGPTNAIFKAFAMIIDKLEEDISS R I I F K A 2 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1357.7969 H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;Q15366 Q15366 58 70 PCBP2 Poly(rC)-binding protein 2 no no 2 6.9595E-07 104.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 9 4 8 4 1.0561 0.93425 28.777 35 Median 0.925 0.84358 18.276 6 3 Median 1.0892 0.92159 11.498 4 0 Median 0.99401 0.96116 14.37 9 0 Median 1.1156 0.93063 6.2146 4 0 Median 1.2575 1.3211 21.126 8 1 Median 1.0138 0.81917 39.409 4 0 Median 1624900000 800560000 824310000 311380000 165560000 145820000 114230000 55896000 58334000 704750000 353520000 351230000 119170000 56308000 62858000 181360000 75244000 106120000 193970000 94031000 99942000 15115 2942;1077 15740 77784;77785;77786;77787;77788;77789;77790;77791;77792;77793;77794;77795;77796;77797;77798;77799;77800;77801;77802;77803;77804;77805;77806;77807;77808;77809;77810;77811;77812;77813;77814;77815;77816;77817;77818;77819 78989;78990;78991;78992;78993;78994;78995;78996;78997;78998;78999;79000;79001;79002;79003;79004;79005;79006;79007;79008;79009;79010;79011;79012;79013;79014;79015;79016;79017;79018;79019;79020;79021;79022;79023;79024;79025;79026;79027;79028;79029;79030;79031;79032;79033;79034;79035;79036;79037;79038;79039;79040;79041;79042;79043;79044;79045;79046;79047;79048;79049;79050;79051;79052;79053;79054 79009 66 IITLEEGDIILTGTPK SMIFSIPYIISYVSKIITLEEGDIILTGTP ITLEEGDIILTGTPKGVGPVKENDEIEAGI K I I P K G 0 0 0 1 0 0 2 2 0 4 2 1 0 0 1 0 3 0 0 0 0 0 16 0 1711.9608 Q6P587 Q6P587 179 194 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2 0.0001356 59.542 By MS/MS By MS/MS 1 1 1.2144 1.0047 0.68318 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2079 0.99989 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2209 1.0096 NaN 1 0 Median 7435000 3058700 4376400 0 0 0 0 0 0 0 0 0 1816200 787130 1029000 0 0 0 5618900 2271500 3347400 15116 3160 15741 77820;77821 79055;79056;79057;79058 79056 4 IITLTGPTNAIFK SGARINISEGNCPERIITLTGPTNAIFKAF ERIITLTGPTNAIFKAFAMIIDKLEEDINS R I I F K A 1 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 3 0 0 0 0 0 13 0 1387.8075 Q15365 Q15365 58 70 PCBP1 Poly(rC)-binding protein 1 yes yes 2 4.849E-07 139.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 8 6 9 8 1.0452 0.90808 24.766 38 Median 0.802 0.73792 18.09 4 0 Median 0.96941 0.82496 25.588 5 1 Median 0.89099 0.86545 16.456 8 1 Median 1.0452 0.90327 23.378 6 0 Median 1.25 1.2892 10.924 7 0 Median 1.1021 0.89678 8.7272 8 0 Median 1663700000 830470000 833270000 159130000 87658000 71471000 106310000 53156000 53155000 683140000 362500000 320650000 305540000 148310000 157230000 304500000 128470000 176040000 105120000 50391000 54731000 15117 2941 15742 77822;77823;77824;77825;77826;77827;77828;77829;77830;77831;77832;77833;77834;77835;77836;77837;77838;77839;77840;77841;77842;77843;77844;77845;77846;77847;77848;77849;77850;77851;77852;77853;77854;77855;77856;77857;77858;77859;77860;77861 79059;79060;79061;79062;79063;79064;79065;79066;79067;79068;79069;79070;79071;79072;79073;79074;79075;79076;79077;79078;79079;79080;79081;79082;79083;79084;79085;79086;79087;79088;79089;79090;79091;79092;79093;79094;79095;79096;79097 79071 38 IITPLNK HSWALSAIDELKVDKIITPLNKDHIPITDS IDELKVDKIITPLNKDHIPITDSPVVVQQH K I I N K D 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 O75694;E9PF10 O75694 472 478 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.023188 72.021 By MS/MS By MS/MS By MS/MS 1 1 1 1.5301 1.4452 9.6994 3 Median NaN NaN NaN 0 0 Median 1.5301 1.3459 NaN 1 1 Median 1.5113 1.6306 NaN 1 1 Median 1.7231 1.4452 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5469000 1095000 4374000 0 0 0 2067200 402080 1665100 2219700 549830 1669900 1182100 143090 1039000 0 0 0 0 0 0 15118 1692 15743 77862;77863;77864 79098;79099;79100 79099 3 IITRPMDLQTLR FHTPVNAKVVKDYYKIITRPMDLQTLRENV YYKIITRPMDLQTLRENVRKRLYPSREEFR K I I L R E 0 2 0 1 0 1 0 0 0 2 2 0 1 0 1 0 2 0 0 0 0 0 12 1 1455.8232 P21675;Q8IZX4;H0Y8N6;H7BY98;H7C2K9 P21675 1420 1431 TAF1;TAF1L Transcription initiation factor TFIID subunit 1;Transcription initiation factor TFIID subunit 1-like yes no 3 2.1195E-05 93.959 By MS/MS 1 0.55248 0.69791 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55248 0.69791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6907300 4174000 2733300 0 0 0 0 0 0 6907300 4174000 2733300 0 0 0 0 0 0 0 0 0 15119 2091 15744 77865 79101 79101 1 IITSELYR LKSKWCRPTSLNVVRIITSELYRSLGDVLR TSLNVVRIITSELYRSLGDVLRDVDAKALV R I I Y R S 0 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 8 0 993.5495 A0A3B3IUB1;Q13144;A0A3B3IS56;A0A3B3IRP4;A0A3B3IUF2;A0A3B3ISM8;A0A3B3ISX3;A0A3B3ITG6;A0A3B3ITK8;A0A3B3IST9;A0A3B3ISI2;A0A3B3ISS1;A0A3B3ISV1;A0A3B3ITQ2 A0A3B3IUB1 122 129 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes no 2 0.0024054 117.93 By MS/MS By MS/MS By MS/MS 1 1 1 1.1889 1.0739 4.4718 3 Median 1.1349 1.0739 NaN 1 0 Median 1.1889 1.0302 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3073 1.1265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15947000 7476400 8471100 9280300 4498000 4782300 3083300 1471500 1611700 0 0 0 3584000 1506900 2077100 0 0 0 0 0 0 15120 443 15745 77866;77867;77868 79102;79103;79104;79105 79102 4 IITVEKHPDADSLYVEK PEEVIPSRLDIRVGKIITVEKHPDADSLYV TVEKHPDADSLYVEKIDVGEAEPRTVVSGL K I I E K I 1 0 0 2 0 0 2 0 1 2 1 2 0 0 1 1 1 0 1 2 0 0 17 1 1956.0204 P54577 P54577 375 391 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 4 0.0019235 27.496 By MS/MS 1 0.92009 0.85886 NaN 1 Median 0.92009 0.85886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23880000 13013000 10867000 23880000 13013000 10867000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15121 2482 15746 77869 79106 79106 1 IITVSMEDVK AQEGIYTLYPFINSRIITVSMEDVKILLTQ FINSRIITVSMEDVKILLTQENPFFRKLSS R I I V K I 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 1 1 0 0 2 0 0 10 0 1133.6002 Q08J23 Q08J23 619 628 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.00041856 75.378 By MS/MS By MS/MS 1 1 1.4075 1.2453 17.463 2 Median 1.2299 1.1006 NaN 1 0 Median 1.6107 1.4089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37460000 16484000 20976000 19675000 8736200 10939000 17785000 7747300 10037000 0 0 0 0 0 0 0 0 0 0 0 0 15122 2745 15747 77870;77871 79107;79108 79107 2 IIVDELK AATGPSIKIWDLEGKIIVDELKQEVISTSS KIWDLEGKIIVDELKQEVISTSSKAEPPQC K I I L K Q 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 P63244;J3KPE3;D6RAC2;D6REE5;H0Y8W2;H0YAF8;H0YAM7;D6RF23;H0Y9P0 P63244 265 271 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.014432 74.415 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1801 1.0006 9.3988 5 Median 1.0823 0.98315 NaN 1 0 Median 1.3032 1.102 15.088 2 0 Median 1.0396 1.0006 NaN 1 0 Median 1.1984 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79923000 35536000 44387000 20686000 9517700 11168000 35170000 14331000 20839000 12532000 6433100 6099300 11535000 5254400 6280600 0 0 0 0 0 0 15123 2624 15748 77872;77873;77874;77875;77876 79109;79110;79111;79112;79113;79114;79115 79115 7 IIVDELKQEVISTSSK AATGPSIKIWDLEGKIIVDELKQEVISTSS IVDELKQEVISTSSKAEPPQCTSLAWSADG K I I S K A 0 0 0 1 0 1 2 0 0 3 1 2 0 0 0 3 1 0 0 2 0 0 16 1 1787.988 P63244;J3KPE3;D6RAC2;D6REE5;H0Y8W2;H0YAF8;H0YAM7;D6RF23;H0Y9P0 P63244 265 280 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2;3 1.3114E-13 174.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 5 2 2 1.1358 1.0707 10.131 15 Median 1.0438 1.0308 4.9224 4 0 Median 1.142 1.0376 0.44706 2 0 Median 1.1803 1.2106 5.0982 5 0 Median 1.2027 1.056 1.9535 2 0 Median 1.1862 1.2553 10.277 2 0 Median NaN NaN NaN 0 0 Median 682020000 313660000 368360000 403500000 190100000 213400000 115850000 50648000 65207000 125110000 56582000 68531000 31647000 13800000 17847000 5900200 2529900 3370300 0 0 0 15124 2624 15749 77877;77878;77879;77880;77881;77882;77883;77884;77885;77886;77887;77888;77889;77890;77891 79116;79117;79118;79119;79120;79121;79122;79123;79124;79125;79126;79127;79128;79129;79130;79131;79132;79133;79134;79135;79136 79121 21 IIVDTYGGWGAHGGGAFSGK VIGGPQGDAGLTGRKIIVDTYGGWGAHGGG YGGWGAHGGGAFSGKDYTKVDRSAAYAARW K I I G K D 2 0 0 1 0 0 0 7 1 2 0 1 0 1 0 1 1 1 1 1 0 0 20 0 1948.9432 P31153;Q00266 P31153 266 285 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 2;3 2.2862E-08 77.078 By MS/MS By MS/MS 2 1 1.0781 1.0575 8.1797 3 Median 1.0978 1.0132 6.0608 2 0 Median NaN NaN NaN 0 0 Median 1.0781 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51651000 24381000 27270000 46844000 21953000 24891000 0 0 0 4806800 2427600 2379100 0 0 0 0 0 0 0 0 0 15125 2202 15750 77892;77893;77894 79137;79138;79139;79140;79141 79139 5 IIVEKPFGR KNIHESCMSQIGWNRIIVEKPFGRDLQSSD QIGWNRIIVEKPFGRDLQSSDRLSNHISSL R I I G R D 0 1 0 0 0 0 1 1 0 2 0 1 0 1 1 0 0 0 0 1 0 0 9 1 1057.6284 P11413;E7EUI8;E9PD92;E7EM57 P11413 167 175 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.028746 55.676 By MS/MS By MS/MS 2 1 0.83629 0.83955 16.92 3 Median 0.89132 0.89266 8.6754 2 0 Median 0.74402 0.67932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16055000 8541800 7513700 11236000 5890400 5345700 4819400 2651400 2167900 0 0 0 0 0 0 0 0 0 0 0 0 15126 1964 15751 77895;77896;77897 79142;79143 79142 2 IIVFSACR HQIVEVAGDDKYGRKIIVFSACRMPPSHQL DDKYGRKIIVFSACRMPPSHQLDHSKLLGY K I I C R M 1 1 0 0 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 8 0 964.51642 Q07960;H0YE29;E9PNR6 Q07960 85 92 ARHGAP1 Rho GTPase-activating protein 1 yes no 2 0.048399 52.683 By MS/MS 1 1.4288 1.3994 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4288 1.3994 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21169000 8318800 12850000 0 0 0 0 0 0 21169000 8318800 12850000 0 0 0 0 0 0 0 0 0 15127 2734 15752 77898 79144 79144 1 IIVGDATEK STALSVEKTSKRGGKIIVGDATEKDASKKS SKRGGKIIVGDATEKDASKKSDSNPLTEIL K I I E K D 1 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 1 0 0 1 0 0 9 0 944.51786 Q96I25;H0Y6J6 Q96I25 277 285 RBM17 Splicing factor 45 yes no 2 0.0027536 69.825 By matching By matching By MS/MS 1 1 1 1.3853 1.2358 27.616 3 Median 1.3853 1.4041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3853 1.2358 NaN 1 0 Median 0.86829 0.82711 NaN 1 0 Median NaN NaN NaN 0 0 Median 8873900 4486200 4387700 1573900 777060 796870 0 0 0 0 0 0 770240 349960 420280 6529700 3359200 3170500 0 0 0 15128 3674 15753 77899;77900;77901 79145 79145 1 IIVGDATEKDASK STALSVEKTSKRGGKIIVGDATEKDASKKS GKIIVGDATEKDASKKSDSNPLTEILKCPT K I I S K K 2 0 0 2 0 0 1 1 0 2 0 2 0 0 0 1 1 0 0 1 0 0 13 1 1345.7089 Q96I25 Q96I25 277 289 RBM17 Splicing factor 45 yes yes 2;3 8.1373E-05 79.466 By MS/MS 2 0.99139 1.0579 18.262 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99139 1.0579 18.262 2 0 Median NaN NaN NaN 0 0 Median 5936300 3057500 2878900 0 0 0 0 0 0 0 0 0 0 0 0 5936300 3057500 2878900 0 0 0 15129 3674 15754 77902;77903 79146;79147;79148 79148 3 IIVLGLLPR EAIVQLINTRQPQAKIIVLGLLPRGEKPNP RQPQAKIIVLGLLPRGEKPNPLRQKNAKVN K I I P R G 0 1 0 0 0 0 0 1 0 2 3 0 0 0 1 0 0 0 0 1 0 0 9 0 992.67464 P68402;J3KNE3 P68402 134 142 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta yes no 2 0.0024179 72.138 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.94393 0.88939 7.2784 6 Median 0.93034 0.8974 10.725 3 0 Median 1.0383 0.87806 NaN 1 0 Median 0.94321 0.88146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.122 0.90931 NaN 1 0 Median 34701000 17511000 17189000 24141000 12351000 11790000 8828800 4274200 4554600 1154800 577160 577640 0 0 0 0 0 0 576670 309130 267530 15130 2635 15755 77904;77905;77906;77907;77908;77909 79149;79150;79151;79152;79153;79154;79155;79156;79157;79158 79153 10 IIYGDPVTFLPHLPR LISQDKRISSNPVAKIIYGDPVTFLPHLPR IIYGDPVTFLPHLPRKSVVHCSKIWSCRKR K I I P R K 0 1 0 1 0 0 0 1 1 2 2 0 0 1 3 0 1 0 1 1 0 0 15 0 1736.9614 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4766 4780 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.0034405 27.969 By MS/MS By matching 1 1 0.50719 0.47318 29.249 2 Median 0.57597 0.5819 NaN 1 0 Median 0.44663 0.38477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2652600 1785300 867340 1906700 1304000 602630 745980 481270 264700 0 0 0 0 0 0 0 0 0 0 0 0 15131 189 15756 77910;77911 79159;79160 79159 2 IIYGGSVTGATCK WLKSNVSDAVAQSTRIIYGGSVTGATCKEL TRIIYGGSVTGATCKELASQPDVDGFLVGG R I I C K E 1 0 0 0 1 0 0 3 0 2 0 1 0 0 0 1 2 0 1 1 0 0 13 0 1325.6649 P60174 P60174 244 256 TPI1 Triosephosphate isomerase yes yes 2 4.3111E-07 156.48 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 1 1.1634 0.98157 12.318 7 Median 1.0529 0.97105 NaN 1 0 Median 1.2113 1.0121 16.179 4 2 Median 1.1634 1.0963 NaN 1 0 Median 1.1631 0.9619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246980000 114310000 132680000 78495000 38019000 40476000 161230000 73118000 88112000 5799300 2462700 3336600 1456800 705650 751140 0 0 0 0 0 0 15132 2523 15757 77912;77913;77914;77915;77916;77917;77918 79161;79162;79163;79164;79165;79166;79167;79168;79169;79170;79171;79172 79161 12 IIYIAPMR KHINMDGTINVDDFKIIYIAPMRSLVQEMV INVDDFKIIYIAPMRSLVQEMVGSFGKRLA K I I M R S 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 1 0 0 0 8 0 975.55756 O75643;A0A494C1A5 O75643 538 545 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0024754 122.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.1041 0.97908 59.861 7 Median NaN NaN NaN 0 0 Median 0.52224 0.44556 111.34 2 1 Median 0.83863 0.91412 16.018 2 0 Median 1.1739 1.0328 5.1155 2 0 Median NaN NaN NaN 0 0 Median 1.1041 0.96907 NaN 1 0 Median 83662000 44693000 38969000 0 0 0 16735000 9930700 6804100 57209000 30065000 27144000 8114000 3784700 4329300 0 0 0 1604500 913080 691400 15133 1688 15758;15759 77919;77920;77921;77922;77923;77924;77925;77926 79173;79174;79175;79176;79177;79178;79179;79180;79181 79175 551 9 IIYIVHDEVK MKEMTCRDIVKEVAKIIYIVHDEVKDKAFE KEVAKIIYIVHDEVKDKAFELELSWVGELT K I I V K D 0 0 0 1 0 0 1 0 1 3 0 1 0 0 0 0 0 0 1 2 0 0 10 0 1227.6863 P25788;G3V4X5 P25788 197 206 PSMA3 Proteasome subunit alpha type-3 yes no 2;3 0.00089881 69.954 By MS/MS By MS/MS 2 2 1.1913 1.1098 12.681 4 Median 1.1913 1.1098 0.22252 2 0 Median 1.241 1.0491 21.232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36215000 15892000 20323000 30743000 13491000 17252000 5472200 2401100 3071100 0 0 0 0 0 0 0 0 0 0 0 0 15134 2137 15760 77927;77928;77929;77930 79182;79183;79184;79185;79186;79187 79183 6 IIYIVHDEVKDK MKEMTCRDIVKEVAKIIYIVHDEVKDKAFE VAKIIYIVHDEVKDKAFELELSWVGELTNG K I I D K A 0 0 0 2 0 0 1 0 1 3 0 2 0 0 0 0 0 0 1 2 0 0 12 1 1470.8082 P25788;G3V4X5 P25788 197 208 PSMA3 Proteasome subunit alpha type-3 yes no 2;3 4.251E-05 141.91 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 1.2361 1.1332 11.231 9 Median 1.1638 1.1804 8.6237 2 0 Median 1.2502 1.139 0.71374 2 0 Median 1.138 1.1372 14.871 2 1 Median 1.4684 1.3216 NaN 1 0 Median 0.93748 1.0167 NaN 1 0 Median 1.0899 0.94587 NaN 1 0 Median 177650000 79190000 98456000 103050000 46957000 56097000 61998000 26575000 35423000 9133200 4294400 4838900 2003200 605750 1397500 509300 338440 170860 947390 418970 528420 15135 2137 15761 77931;77932;77933;77934;77935;77936;77937;77938;77939 79188;79189;79190;79191;79192;79193;79194;79195;79196;79197;79198 79194 11 IIYVPLPDAATR DRIDKALMRPGRIDRIIYVPLPDAATRREI IDRIIYVPLPDAATRREIFKLQFHSMPVSN R I I T R R 2 1 0 1 0 0 0 0 0 2 1 0 0 0 2 0 1 0 1 1 0 0 12 0 1327.75 Q8NB90 Q8NB90 791 802 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.0011423 56.563 By MS/MS By matching 1 1 0.81554 0.79343 33.696 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9392 1.0069 NaN 1 0 Median 0.70816 0.62521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2850100 1406000 1444100 0 0 0 0 0 0 2658400 1288500 1369900 191660 117510 74149 0 0 0 0 0 0 15136 3401 15762 77940;77941 79199 79199 1 IKADIIYPGHGPVIHNAEAK EDLYDYMNSLKELLKIKADIIYPGHGPVIH IYPGHGPVIHNAEAKIQQYISHRNIREQQI K I K A K I 3 0 1 1 0 0 1 2 2 4 0 2 0 0 2 0 0 0 1 1 0 0 20 1 2142.1586 Q53H82 Q53H82 190 209 LACTB2 Beta-lactamase-like protein 2 yes yes 3;4 0.018955 16.299 By MS/MS By matching 2 1 0.74785 0.70584 40.648 3 Median 0.52148 0.5086 50.877 2 0 Median 0.78314 0.70584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13339000 8501700 4837500 11970000 7699900 4270200 1369200 801860 567330 0 0 0 0 0 0 0 0 0 0 0 0 15137 3032 15763 77942;77943;77944 79200;79201 79200 2 IKAEYEGDGIPTVFVAVAGR LRVTSAHKGPDETLRIKAEYEGDGIPTVFV EGDGIPTVFVAVAGRSNGLGPVMSGNTAYP R I K G R S 3 1 0 1 0 0 2 3 0 2 0 1 0 1 1 0 1 0 1 3 0 0 20 1 2091.1001 P22234;E9PBS1;D6RF62 P22234 312 331 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 3 0.00061507 43.12 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.9531 0.98506 23.564 6 Median 0.9531 0.98506 7.6772 2 0 Median 1.1343 1.0695 NaN 1 1 Median 0.89181 0.98895 48.051 2 0 Median 0.84412 0.8155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25325000 13013000 12313000 8614300 4459600 4154600 9544700 4332400 5212300 6225800 3707500 2518300 940730 513280 427450 0 0 0 0 0 0 15138 909 15764 77945;77946;77947;77948;77949;77950 79202;79203;79204;79205 79203 4 IKAIPQLQGYLR RKIDQKAVDSQILPKIKAIPQLQGYLRSVF LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K I K L R S 1 1 0 0 0 2 0 1 0 2 2 1 0 0 1 0 0 0 1 0 0 0 12 1 1398.8347 Q02878 Q02878 261 272 RPL6 60S ribosomal protein L6 yes yes 3 0.032082 21.631 By matching By MS/MS 1 1 0.8551 0.91859 16.272 2 Median 0.76624 0.81875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95427 1.0306 NaN 1 0 Median NaN NaN NaN 0 0 Median 3237800 1500800 1737000 782620 370840 411770 0 0 0 0 0 0 0 0 0 2455200 1130000 1325300 0 0 0 15139 2703 15765 77951;77952 79206 79206 1 IKAQDEAFALQDVPLSSVVR VAGLVTLKHVYEIARIKAQDEAFALQDVPL EAFALQDVPLSSVVRSIIGSARSLGIRVVK R I K V R S 3 1 0 2 0 2 1 0 0 1 2 1 0 1 1 2 0 0 0 3 0 0 20 1 2185.1743 Q9Y3B7;H0YCD5 Q9Y3B7 123 142 MRPL11 39S ribosomal protein L11, mitochondrial yes no 3 1.686E-07 57.009 By MS/MS By matching By matching 1 2 1 0.98744 0.94725 20.569 4 Median 0.91183 0.9523 NaN 1 0 Median 1.2501 1.1397 26.908 2 0 Median 0.85308 0.8703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14544000 7503100 7040600 13143000 6870000 6273400 820830 298480 522340 579500 334580 244920 0 0 0 0 0 0 0 0 0 15140 4416 15766 77953;77954;77955;77956 79207 79207 1 IKATVEELKEK VDDHLMGKQHMGYAKIKATVEELKEKLRKR GYAKIKATVEELKEKLRKRTEEPDRDERLK K I K E K L 1 0 0 0 0 0 3 0 0 1 1 3 0 0 0 0 1 0 0 1 0 0 11 2 1286.7446 J3KPP4;O95232;H0YA81 J3KPP4 223 233 LUC7L3 Luc7-like protein 3 yes no 3 0.00063835 56.205 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.111 1.2102 9.954 5 Median 0.98634 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0528 1.244 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1909 1.2588 5.5772 2 0 Median 1.192 1.1676 NaN 1 0 Median 27657000 12947000 14711000 1463000 712210 750750 0 0 0 549320 261270 288050 0 0 0 17907000 8798500 9108700 7737900 3174900 4563000 15141 1309 15767 77957;77958;77959;77960;77961 79208;79209;79210 79209 3 IKDAFDRNPELQNLLLDDFFK MWRGGCIIRSVFLGKIKDAFDRNPELQNLL RNPELQNLLLDDFFKSAVENCQDSWRRAVS K I K F K S 1 1 2 4 0 1 1 0 0 1 4 2 0 3 1 0 0 0 0 0 0 0 21 2 2550.3118 P52209 P52209 376 396 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 3 0.030826 13.731 By matching By MS/MS 1 1 0.93978 1.0056 5.0045 2 Median 0.86866 0.97066 NaN 1 0 Median 1.0167 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7876300 3782100 4094200 2564700 1198500 1366300 5311600 2583600 2728000 0 0 0 0 0 0 0 0 0 0 0 0 15142 2447 15768 77962;77963 79211 79211 1 IKDDGPSQSESATETAMTLPSESR ISKGTQEVLKYLRSKIKDDGPSQSESATET ESATETAMTLPSESRVNIHAIITLKILDYS K I K S R V 2 1 0 2 0 1 3 1 0 1 1 1 1 0 2 5 3 0 0 0 0 0 24 1 2536.1599 Q9H9A6 Q9H9A6 369 392 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 3 2.6564E-08 48.115 By MS/MS 1 0.61752 0.61971 NaN 1 Median 0.61752 0.61971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8771900 6196800 2575100 8771900 6196800 2575100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15143 3996 15769 77964 79212;79213 79213 2 IKDEPDNAQEYSHGQQQK EYDKAMAPQQGLLDKIKDEPDNAQEYSHGQ EPDNAQEYSHGQQQKTQEGELKISAVFSVS K I K Q K T 1 0 1 2 0 4 2 1 1 1 0 2 0 0 1 1 0 0 1 0 0 0 18 1 2113.9665 Q5VZL5;H7C1I7 Q5VZL5 272 289 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.068468 8.8192 By MS/MS By matching 2 1 0.77315 0.87705 5.0103 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74846 0.85478 3.6378 2 0 Median 0.99023 0.92086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3603300 1939800 1663600 0 0 0 0 0 0 3296300 1759600 1536800 307000 180200 126800 0 0 0 0 0 0 15144 3117 15770 77965;77966;77967 79214 79214 1 IKDIAWTEDSKR KEHLLKYEYQPFAGKIKDIAWTEDSKRIAV AGKIKDIAWTEDSKRIAVVGEGREKFGAVF K I K K R I 1 1 0 2 0 0 1 0 0 2 0 2 0 0 0 1 1 1 0 0 0 0 12 2 1460.7623 O75083;D6RD66 O75083 105 116 WDR1 WD repeat-containing protein 1 yes no 2;3 0.00033447 72.496 By MS/MS By MS/MS By MS/MS 3 2 1 0.82594 0.89413 25.254 5 Median 0.82594 0.89413 27.475 3 0 Plateau 1.1092 1.0552 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95336 0.97887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31855000 17219000 14635000 14990000 7394700 7595000 15796000 9430000 6366400 0 0 0 1068500 394790 673750 0 0 0 0 0 0 15145 1643 15771 77968;77969;77970;77971;77972;77973 79215;79216;79217;79218;79219 79215 5 IKDLSTVEALQNLK EKCPNLTYLNLSGNKIKDLSTVEALQNLKN KIKDLSTVEALQNLKNLKSLDLFNCEITNL K I K L K N 1 0 1 1 0 1 1 0 0 1 3 2 0 0 0 1 1 0 0 1 0 0 14 1 1570.893 E9PPH5;Q9BTT0 E9PPH5 50 63 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2;3 0.00026922 69.721 By MS/MS By MS/MS By MS/MS By matching 7 4 3 2 1.108 1.0542 16.066 16 Median 0.92305 0.93872 19.626 7 1 Median 1.1973 1.0779 14.918 4 0 Median 1.1133 1.1496 6.7653 3 0 Median 1.2978 1.1396 2.5189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201470000 97184000 104280000 147100000 72550000 74546000 44044000 19968000 24076000 9501600 4321900 5179700 825830 344570 481260 0 0 0 0 0 0 15146 978 15772 77974;77975;77976;77977;77978;77979;77980;77981;77982;77983;77984;77985;77986;77987;77988;77989 79220;79221;79222;79223;79224;79225;79226;79227;79228;79229;79230 79228 11 IKDMDLWEQQEEER LEEIPLIKSAYEEQRIKDMDLWEQQEEERI RIKDMDLWEQQEEERITTMQLEREKALEHK R I K E R I 0 1 0 2 0 2 4 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 14 1 1847.836 Q14152 Q14152 719 732 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 1.9489E-07 168.02 By MS/MS By MS/MS By matching 3 4 1 1.0093 0.98547 8.3515 8 Median 0.99093 0.98848 5.2245 3 0 Median 1.0874 1.022 9.4439 4 1 Median 0.79668 0.90223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97912000 47794000 50118000 63284000 31820000 31463000 30099000 13399000 16700000 4528700 2574500 1954200 0 0 0 0 0 0 0 0 0 15147 2860 15773;15774 77990;77991;77992;77993;77994;77995;77996;77997 79231;79232;79233;79234;79235;79236;79237;79238;79239 79233 1540 9 IKDPDASKPEDWDER SGSLEDDWDFLPPKKIKDPDASKPEDWDER IKDPDASKPEDWDERAKIDDPTDSKPEDWD K I K E R A 1 1 0 4 0 0 2 0 0 1 0 2 0 0 2 1 0 1 0 0 0 0 15 2 1799.8326 P27797;K7EJB9 P27797 208 222 CALR Calreticulin yes no 2;3;4 1.8989E-08 112.44 By MS/MS By MS/MS By MS/MS By MS/MS 7 7 4 2 0.7958 0.92077 23.062 20 Median 0.7539 0.84242 23.74 7 1 Median 0.78202 0.91986 25.594 7 1 Median 0.73889 0.85727 24.333 4 0 Median 0.95142 1.0126 13.31 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192210000 100740000 91475000 77526000 41781000 35745000 89510000 45669000 43841000 16400000 8823500 7576000 8779700 4467700 4312000 0 0 0 0 0 0 15148 2157 15775 77998;77999;78000;78001;78002;78003;78004;78005;78006;78007;78008;78009;78010;78011;78012;78013;78014;78015;78016;78017 79240;79241;79242;79243;79244;79245;79246;79247;79248;79249;79250;79251;79252;79253;79254;79255;79256;79257;79258;79259;79260;79261;79262;79263;79264;79265;79266 79246 27 IKDQQPDSDMDPNSSGEGVNSVSSSIK AVDLSEVVIKWELQRIKDQQPDSDMDPNSS NSSGEGVNSVSSSIKRGLSVDSAQEVKRFR R I K I K R 0 0 2 4 0 2 1 2 0 2 0 2 1 0 2 7 0 0 0 2 0 0 27 1 2820.272 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2002 2028 TRRAP Transformation/transcription domain-associated protein yes no 3 4.2302E-09 47.919 By MS/MS By MS/MS 1 1 0.75505 0.81075 11.549 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65835 0.74717 NaN 1 0 Median 0.86594 0.87974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9152700 4691200 4461500 0 0 0 0 0 0 6479200 3210800 3268400 2673500 1480400 1193100 0 0 0 0 0 0 15149 991 15776 78018;78019 79267;79268;79269 79267 3 IKDTVLQR AYCPAPQVSNDLLLKIKDTVLQRTVDGMQQ SNDLLLKIKDTVLQRTVDGMQQEGTPYTGI K I K Q R T 0 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 1 971.57638 P22102;F8WD69 P22102 250 257 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.041877 61.962 By matching By MS/MS By matching By matching 1 2 1 1 1.1372 1.1123 18.913 5 Median 1.0955 1.1123 NaN 1 0 Median 0.93387 0.89403 21.214 2 0 Median 1.2411 1.2597 NaN 1 0 Median 1.313 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21486000 9545800 11940000 1210500 618120 592390 4188200 1896000 2292200 15713000 6925000 8788000 374610 106710 267900 0 0 0 0 0 0 15150 2098 15777 78020;78021;78022;78023;78024 79270 79270 1 IKDYLLMEEEFIR TPHTQCRLKLLKLERIKDYLLMEEEFIRNQ ERIKDYLLMEEEFIRNQEQMKPLEEKQEEE R I K I R N 0 1 0 1 0 0 3 0 0 2 2 1 1 1 0 0 0 0 1 0 0 0 13 1 1697.8698 P62191 P62191 68 80 PSMC1 26S protease regulatory subunit 4 yes yes 3 0.037692 19.394 By MS/MS 2 0.99512 0.91848 20.136 2 Median NaN NaN NaN 0 0 Median 0.99512 0.91848 20.136 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8987500 4834100 4153400 0 0 0 8987500 4834100 4153400 0 0 0 0 0 0 0 0 0 0 0 0 15151 2571 15778 78025;78026 79271 79271 1 IKEDNFFQVSK IEEAKKRLELPEHLKIKEDNFFQVSKSKIM EHLKIKEDNFFQVSKSKIMNGH________ K I K S K S 0 0 1 1 0 1 1 0 0 1 0 2 0 2 0 1 0 0 0 1 0 0 11 1 1353.6929 Q969G6 Q969G6 138 148 RFK Riboflavin kinase yes yes 2;3 0.00080064 108.7 By MS/MS By MS/MS 3 2 0.8783 0.80661 18.122 5 Median 0.79901 0.80661 23.611 3 0 Median 0.96383 0.85217 13.138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29801000 15035000 14765000 25435000 12871000 12564000 4365600 2164400 2201200 0 0 0 0 0 0 0 0 0 0 0 0 15152 3582 15779 78027;78028;78029;78030;78031 79272;79273;79274;79275;79276;79277;79278 79278 7 IKEIAVTVK IIRAFRTATQLAVNKIKEIAVTVKKADKVE QLAVNKIKEIAVTVKKADKVEQRKLLEKCA K I K V K K 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 1 0 0 2 0 0 9 1 999.63283 Q99832 Q99832 136 144 CCT7 T-complex protein 1 subunit eta yes yes 2 0.0041375 93.098 By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 2 1 1.2208 1.1163 16.946 8 Median 1.3619 1.2951 31.017 2 0 Median 1.1525 1.0771 8.3424 2 0 Median 1.2542 1.3167 NaN 1 0 Median 1.2831 1.2327 20.906 2 0 Median NaN NaN NaN 0 0 Median 1.2237 1.0906 NaN 1 0 Median 66105000 31412000 34693000 24717000 11940000 12777000 34295000 16511000 17784000 2439400 924020 1515400 1332600 590810 741840 0 0 0 3321300 1446300 1874900 15153 3771 15780 78032;78033;78034;78035;78036;78037;78038;78039 79279;79280;79281;79282;79283;79284 79282 6 IKEIILLKPEGDAR NSSEGKMPLEERIQKIKEIILLKPEGDARI KIKEIILLKPEGDARIETIMKQAESSEAPL K I K A R I 1 1 0 1 0 0 2 1 0 3 2 2 0 0 1 0 0 0 0 0 0 0 14 2 1593.9454 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2083 2096 SYNE2 Nesprin-2 yes no 3 0.0048268 30.961 By MS/MS By matching 1 1 0.85584 1.069 7.8648 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76196 1.0111 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96129 1.1301 NaN 1 0 Median NaN NaN NaN 0 0 Median 8507000 4572400 3934600 0 0 0 0 0 0 7109500 3895800 3213700 0 0 0 1397500 676650 720860 0 0 0 15154 3521 15781 78040;78041 79285;79286 79285 2 IKEILAQVASEHL AIERDPAQHEKLIVRIKEILAQVASEHL__ VRIKEILAQVASEHL_______________ R I K H L - 2 0 0 0 0 1 2 0 1 2 2 1 0 0 0 1 0 0 0 1 0 0 13 1 1449.8191 Q9P0W2 Q9P0W2 305 317 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes yes 3 0.0041288 34.685 By MS/MS By matching 1 1 1.1368 1.0296 23.052 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91324 0.87474 NaN 1 0 Median 1.415 1.2119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4890300 2570700 2319500 0 0 0 0 0 0 4700500 2492300 2208200 189770 78486 111280 0 0 0 0 0 0 15155 4210 15782 78042;78043 79287 79287 1 IKELDHNISK EVAKHKEQNNDSQLKIKELDHNISKHKREA DSQLKIKELDHNISKHKREAEDGAAKVSKM K I K S K H 0 0 1 1 0 0 1 0 1 2 1 2 0 0 0 1 0 0 0 0 0 0 10 1 1195.6561 O95347 O95347 910 919 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 0.0025216 62.463 By matching By MS/MS By matching 1 2 1 1.0343 1.0406 83.908 4 Median 0.98543 1.0482 NaN 1 0 Median 0.48306 0.4516 118.93 2 1 Median NaN NaN NaN 0 0 Median 1.0857 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757400 2374400 3383000 368910 200490 168410 4892400 1952500 2939900 0 0 0 496040 221380 274660 0 0 0 0 0 0 15156 1766 15783 78044;78045;78046;78047 79288;79289 79289 2 IKELEQEREDQK QREYKKKKALKKAQRIKELEQEREDQKVKW AQRIKELEQEREDQKVKWQQFNNRAYSKNK R I K Q K V 0 1 0 1 0 2 4 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 12 2 1543.7842 O75940 O75940 164 175 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 3 0.029438 22.474 By matching By MS/MS 1 1 1.0058 1.0087 3.9325 2 Median 1.0013 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0104 0.98106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759100 911400 847750 488880 251920 236960 0 0 0 0 0 0 1270300 659480 610790 0 0 0 0 0 0 15157 1710 15784 78048;78049 79290 79290 1 IKELTSTCSPIISK LTMDPVVKSKEIEAKIKELTSTCSPIISKP KIKELTSTCSPIISKPKPKVEPPKEEQKNA K I K S K P 0 0 0 0 1 0 1 0 0 3 1 2 0 0 1 3 2 0 0 0 0 0 14 1 1575.8542 P34932 P34932 772 785 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 0.052675 23.138 By MS/MS 1 0.93612 0.87589 NaN 1 Median NaN NaN NaN 0 0 Median 0.93612 0.87589 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1964000 1016400 947650 0 0 0 1964000 1016400 947650 0 0 0 0 0 0 0 0 0 0 0 0 15158 2230 15785 78050 79291 79291 1 IKELTSTCSPIISKPK LTMDPVVKSKEIEAKIKELTSTCSPIISKP KELTSTCSPIISKPKPKVEPPKEEQKNAEQ K I K P K P 0 0 0 0 1 0 1 0 0 3 1 3 0 0 2 3 2 0 0 0 0 0 16 2 1801.0019 P34932 P34932 772 787 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 0.0082388 25.167 By MS/MS 1 0.92101 0.87472 NaN 1 Median NaN NaN NaN 0 0 Median 0.92101 0.87472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3688400 2037400 1651000 0 0 0 3688400 2037400 1651000 0 0 0 0 0 0 0 0 0 0 0 0 15159 2230 15786 78051 79292 79292 1 IKELVVTQLGYDTR EGAIDTQNKPITSEKIKELVVTQLGYDTRV KIKELVVTQLGYDTRVTILGHVQRGGTPSA K I K T R V 0 1 0 1 0 1 1 1 0 1 2 1 0 0 0 0 2 0 1 2 0 0 14 1 1633.9039 Q01813;B1APP6;V9GY25 Q01813 288 301 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 4.4296E-07 98.353 By MS/MS By matching 2 1 1.0283 1.0234 3.2766 3 Median 0.99585 1.0232 4.6338 2 0 Median 1.0294 1.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38016000 17601000 20415000 31103000 14717000 16385000 6913100 2883800 4029300 0 0 0 0 0 0 0 0 0 0 0 0 15160 2692 15787 78052;78053;78054 79293;79294;79295;79296 79295 4 IKETVDQVEELR ELEEQQMHLNVGLRKIKETVDQVEELRRDL LRKIKETVDQVEELRRDLRIKSQELEVKNA K I K L R R 0 1 0 1 0 1 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 1 1457.7726 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3208 3219 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.02185 37.426 By MS/MS By MS/MS 1 1 0.9554 0.99197 1.5184 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84796 0.98138 NaN 1 1 Median 1.0765 1.0027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6360100 3114300 3245800 0 0 0 0 0 0 4429200 2169800 2259400 1930800 944480 986340 0 0 0 0 0 0 15161 2865 15788 78055;78056 79297;79298 79298 2 IKETVDQVEELRR ELEEQQMHLNVGLRKIKETVDQVEELRRDL RKIKETVDQVEELRRDLRIKSQELEVKNAA K I K R R D 0 2 0 1 0 1 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 13 2 1613.8737 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3208 3220 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3;4 2.0076E-66 250.7 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 3 1.0283 1.1417 22.615 11 Median 1.0171 0.98123 4.6104 3 0 Plateau 1.1361 1.0956 NaN 1 0 Median 1.0857 1.2695 26.21 4 0 Median 1.1473 1.166 14.658 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 281120000 135480000 145640000 98392000 47241000 51151000 68089000 32318000 35772000 94736000 46887000 47849000 19901000 9035400 10866000 0 0 0 0 0 0 15162 2865 15789 78057;78058;78059;78060;78061;78062;78063;78064;78065;78066;78067 79299;79300;79301;79302;79303;79304;79305;79306;79307;79308;79309;79310;79311;79312;79313;79314;79315;79316;79317 79308 19 IKEWYEK KVRALEESNYELEGKIKEWYEKHGNSHQGE SNYELEGKIKEWYEKHGNSHQGEPRDYSKY K I K E K H 0 0 0 0 0 0 2 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 7 1 994.51238 P13645;CON__P13645;CON__P02535-1 P13645 178 184 KRT10 Keratin, type I cytoskeletal 10 no no 2 0.00038144 120.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 1 1 0.087404 0.079244 79.88 11 Median 0.051369 0.052854 67.203 2 2 Median 0.23908 0.23153 84.153 5 5 Median NaN NaN NaN 0 0 Median 0.082991 0.076323 48.586 2 2 Median 0.023269 0.024853 NaN 1 1 Median 0.093201 0.079244 NaN 1 1 Median 151630000 142990000 8639900 48290000 46870000 1419800 53877000 49075000 4802100 0 0 0 19458000 18253000 1205600 26844000 26041000 803560 3160900 2752000 408900 + 15163 756;740 15790 78068;78069;78070;78071;78072;78073;78074;78075;78076;78077;78078;78079 79318;79319;79320;79321;79322;79323;79324;79325;79326;79327;79328;79329 79328 12 IKFEMEQNLR LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA LDDFRIKFEMEQNLRQGVDADINGLRQVLD R I K L R Q 0 1 1 0 0 1 2 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 10 1 1306.6704 P35527;CON__P35527;K7EQQ3 P35527 241 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 6.8723E-27 175.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 17 16 30 17 6 0.038319 0.04016 144.28 94 Median 0.051693 0.051049 96.963 19 19 Median 0.043111 0.038233 179.94 14 14 Median 0.091181 0.10326 168.51 13 13 Median 0.028055 0.027084 138.91 27 27 Median 0.027253 0.028873 123.93 15 15 Median 0.034435 0.030476 37.775 6 6 Median 2549100000 2443000000 106120000 537310000 499020000 38289000 386320000 368900000 17425000 410920000 390010000 20906000 425530000 412650000 12874000 744990000 730120000 14872000 44048000 42295000 1752700 + 15164 2242 15791;15792 78080;78081;78082;78083;78084;78085;78086;78087;78088;78089;78090;78091;78092;78093;78094;78095;78096;78097;78098;78099;78100;78101;78102;78103;78104;78105;78106;78107;78108;78109;78110;78111;78112;78113;78114;78115;78116;78117;78118;78119;78120;78121;78122;78123;78124;78125;78126;78127;78128;78129;78130;78131;78132;78133;78134;78135;78136;78137;78138;78139;78140;78141;78142;78143;78144;78145;78146;78147;78148;78149;78150;78151;78152;78153;78154;78155;78156;78157;78158;78159;78160;78161;78162;78163;78164;78165;78166;78167;78168;78169;78170;78171;78172;78173;78174;78175;78176;78177;78178;78179;78180;78181;78182;78183;78184;78185 79330;79331;79332;79333;79334;79335;79336;79337;79338;79339;79340;79341;79342;79343;79344;79345;79346;79347;79348;79349;79350;79351;79352;79353;79354;79355;79356;79357;79358;79359;79360;79361;79362;79363;79364;79365;79366;79367;79368;79369;79370;79371;79372;79373;79374;79375;79376;79377;79378;79379;79380;79381;79382;79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393;79394;79395;79396;79397;79398;79399;79400;79401;79402;79403;79404;79405;79406;79407;79408;79409;79410;79411;79412;79413;79414;79415;79416;79417;79418;79419;79420;79421;79422;79423;79424;79425;79426;79427;79428;79429;79430;79431;79432;79433;79434;79435;79436;79437;79438;79439;79440;79441;79442;79443;79444;79445;79446;79447;79448;79449;79450;79451;79452;79453;79454;79455;79456;79457;79458;79459 79418 975 130 IKFKESFAEMNR SWSSLSMDEKVELYRIKFKESFAEMNRGSN LYRIKFKESFAEMNRGSNEWKTVVGGAMFF R I K N R G 1 1 1 0 0 0 2 0 0 1 0 2 1 2 0 1 0 0 0 0 0 0 12 2 1498.7602 P13073;H3BPG0;H3BN72;H3BNV9 P13073 84 95 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 3 0.01321 61.375 By MS/MS 1 0.71371 0.75024 NaN 1 Median 0.71371 0.75024 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7674700 4288800 3385800 7674700 4288800 3385800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15165 1988 15793 78186 79460 79460 1 IKFPLPHR SKCRRPAVKQFHDSKIKFPLPHRVLRRQHK KQFHDSKIKFPLPHRVLRRQHKPRFTTK__ K I K H R V 0 1 0 0 0 0 0 0 1 1 1 1 0 1 2 0 0 0 0 0 0 0 8 1 1006.6076 M0R3D6;M0R1A7;Q02543;M0R0P7 M0R3D6 121 128 RPL18A 60S ribosomal protein L18a yes no 2 0.026889 83.801 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.69087 0.63384 26.304 4 Median 0.73276 0.76329 NaN 1 0 Median 0.73785 0.68325 NaN 1 0 Median 0.40312 0.417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65138 0.58801 NaN 1 0 Median 39251000 21838000 17413000 27422000 14894000 12528000 7347000 3872700 3474200 4084700 2815700 1269000 0 0 0 0 0 0 396940 255680 141260 15166 1433 15794 78187;78188;78189;78190;78191 79461;79462;79463;79464;79465;79466;79467 79463 7 IKGCTDNLTLTVAR GENTSNMTHLEAQNRIKGCTDNLTLTVARS RIKGCTDNLTLTVARSEHKVWSPLVTEEGK R I K A R S 1 1 1 1 1 0 0 1 0 1 2 1 0 0 0 0 3 0 0 1 0 0 14 1 1560.8294 O00151 O00151 70 83 PDLIM1 PDZ and LIM domain protein 1 yes yes 3 0.0062493 39.509 By MS/MS 3 1.1692 1.0969 14.073 3 Median NaN NaN NaN 0 0 Median 1.1692 1.0969 14.073 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6970400 2942100 4028300 0 0 0 6970400 2942100 4028300 0 0 0 0 0 0 0 0 0 0 0 0 15167 1442 15795 78192;78193;78194 79468;79469 79468 2 IKGDMDISVPK QISMSDIDLNLKGPKIKGDMDISVPKLEGD KGPKIKGDMDISVPKLEGDLKGPKVDVKGP K I K P K L 0 0 0 2 0 0 0 1 0 2 0 2 1 0 1 1 0 0 0 1 0 0 11 1 1201.6377 Q09666 Q09666 4533 4543 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0024245 64.374 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 3 3 1 1.0733 1.105 17.895 12 Median 0.88448 0.96366 13.02 3 0 Median 1.1644 1.126 10.516 2 0 Median 0.9901 1.1212 26.152 3 1 Median 1.138 1.1206 3.9403 3 0 Median 1.2588 1.4399 NaN 1 0 Median NaN NaN NaN 0 0 Median 104540000 53224000 51311000 22832000 11889000 10943000 12282000 6565700 5716000 42259000 21686000 20573000 21178000 9881800 11296000 5984600 3201900 2782700 0 0 0 15168 2749 15796 78195;78196;78197;78198;78199;78200;78201;78202;78203;78204;78205;78206 79470;79471;79472;79473;79474;79475;79476;79477;79478 79470 9 IKGDVDVSAPK KISMPDVDFNLKGPKIKGDVDVSAPKLEGE KGPKIKGDVDVSAPKLEGELKGPELDVKGP K I K P K L 1 0 0 2 0 0 0 1 0 1 0 2 0 0 1 1 0 0 0 2 0 0 11 1 1127.6186 Q09666 Q09666 2326 2336 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00076798 97.813 By matching By matching By MS/MS By matching 1 1 2 1 0.97084 0.9492 12.449 5 Median 0.79823 0.84084 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98243 1.1155 NaN 1 0 Median 0.99333 0.96758 2.7126 2 0 Median NaN NaN NaN 0 0 Median 0.92146 0.82228 NaN 1 0 Median 16878000 8127400 8750200 380270 269250 111020 0 0 0 5036500 2472000 2564500 10043000 4903300 5139400 0 0 0 1418100 482840 935260 15169 2749 15797 78207;78208;78209;78210;78211 79479;79480 79479 2 IKGDVDVSVPEVEGK NISMPDVDLNLKGPKIKGDVDVSVPEVEGK IKGDVDVSVPEVEGKLEVPDMNIRGPKVDV K I K G K L 0 0 0 2 0 0 2 2 0 1 0 2 0 0 1 1 0 0 0 4 0 0 15 1 1569.825 Q09666 Q09666 2467 2481 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00010602 58.814 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.88262 0.8756 7.2924 5 Median 0.88262 0.96141 NaN 1 0 Median 0.91624 0.8756 NaN 1 0 Median 0.75544 0.85644 NaN 1 0 Median 0.86103 0.84143 9.4257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51813000 25274000 26539000 13388000 6109500 7278900 15894000 7724600 8169500 11062000 6075100 4987000 11469000 5365000 6103700 0 0 0 0 0 0 15170 2749 15798 78212;78213;78214;78215;78216 79481;79482;79483;79484;79485;79486 79482 5 IKGDVDVTGPK KISMPDIDLNLTGPKIKGDVDVTGPKVEGD TGPKIKGDVDVTGPKVEGDLKGPEVDLKGP K I K P K V 0 0 0 2 0 0 0 2 0 1 0 2 0 0 1 0 1 0 0 2 0 0 11 1 1127.6186 Q09666 Q09666 2849 2859 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00086307 77.662 By MS/MS By MS/MS By matching By MS/MS By matching 3 1 1 2 1 0.90783 0.945 9.4389 8 Median 0.89104 0.96442 7.2742 3 0 Median 0.85163 0.81132 NaN 1 0 Median 0.92494 1.0515 NaN 1 0 Median 0.98481 0.95885 4.9335 2 0 Median 0.80895 0.85036 NaN 1 0 Median NaN NaN NaN 0 0 Median 24720000 12597000 12123000 6559400 3422300 3137100 5056000 2608300 2447700 2798300 1383000 1415300 8694500 4350900 4343600 1611600 832500 779110 0 0 0 15171 2749 15799 78217;78218;78219;78220;78221;78222;78223;78224 79487;79488;79489;79490;79491 79491 5 IKGDVDVTGPKVEGDLK KISMPDIDLNLTGPKIKGDVDVTGPKVEGD GDVDVTGPKVEGDLKGPEVDLKGPKVDIDV K I K L K G 0 0 0 3 0 0 1 3 0 1 1 3 0 0 1 0 1 0 0 3 0 0 17 2 1768.9571 Q09666 Q09666 2849 2865 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.064304 10.141 By MS/MS 1 0.79284 0.93652 NaN 1 Median 0.79284 0.93652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10955000 5660600 5294100 10955000 5660600 5294100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15172 2749 15800 78225 79492 79492 1 IKGDVPSVGLEGPDVDLQGPEAK QVSIPDVNVNLKGPKIKGDVPSVGLEGPDV GLEGPDVDLQGPEAKIKFPKFSMPKIGIPG K I K A K I 1 0 0 3 0 1 2 4 0 1 2 2 0 0 3 1 0 0 0 3 0 0 23 1 2319.1958 Q09666 Q09666 5208 5230 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 4.8614E-29 106.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 6 5 1 0.73397 0.74511 12.584 17 Median 0.60471 0.65872 9.9804 3 1 Median 0.77478 0.74751 9.4632 2 0 Median 0.68313 0.77322 16.333 6 5 Median 0.78134 0.76329 5.4885 5 0 Median NaN NaN NaN 0 0 Median 0.81832 0.74511 NaN 1 0 Median 190390000 110060000 80333000 93540000 55908000 37631000 5531000 3151700 2379200 85816000 48095000 37721000 5236700 2749300 2487400 0 0 0 268470 154760 113720 15173 2749 15801 78226;78227;78228;78229;78230;78231;78232;78233;78234;78235;78236;78237;78238;78239;78240;78241;78242 79493;79494;79495;79496;79497;79498;79499;79500;79501;79502;79503;79504;79505;79506;79507 79500 15 IKGEELSEANVR EDRETVIKELKKSLKIKGEELSEANVRLSL SLKIKGEELSEANVRLSLLEKKLDSAAKDA K I K V R L 1 1 1 0 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1343.7045 E7EX90;Q14203 E7EX90 944 955 DCTN1 Dynactin subunit 1 yes no 2;3 1.8894E-05 105.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 4 1 1.0997 1.0777 20.939 11 Median 1.0465 1.051 9.9473 3 0 Plateau 1.2153 1.122 15.667 3 0 Median 0.83588 0.94665 NaN 1 0 Median 1.2002 1.156 31.983 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58501000 27133000 31369000 18100000 8847600 9252300 30580000 13427000 17154000 4745500 2378800 2366800 5075600 2479700 2595900 0 0 0 0 0 0 15174 906 15802 78243;78244;78245;78246;78247;78248;78249;78250;78251;78252;78253;78254 79508;79509;79510;79511;79512;79513;79514;79515;79516;79517;79518;79519;79520;79521;79522 79517 15 IKGEHPGLSIGDVAK PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K I K A K K 1 0 0 1 0 0 1 3 1 2 1 2 0 0 1 1 0 0 0 1 0 0 15 1 1519.8358 P09429;Q5T7C4;B2RPK0 P09429 113 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3 5.1627E-26 200.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 7 7 3 5 0.94699 0.91098 17.811 34 Median 0.86951 0.83394 21.321 7 1 Median 0.94766 0.85302 28.869 5 0 Median 0.92273 0.92511 7.1516 7 2 Median 0.99036 0.89144 7.8394 7 0 Median 0.98006 1.058 5.6056 3 0 Plateau 1.1484 0.99669 9.761 5 0 Median 4598300000 2274500000 2323900000 398040000 207440000 190610000 244380000 119870000 124510000 1586000000 804980000 781040000 2198600000 1060100000 1138500000 64919000 31569000 33350000 106390000 50537000 55852000 15175 1915 15803 78255;78256;78257;78258;78259;78260;78261;78262;78263;78264;78265;78266;78267;78268;78269;78270;78271;78272;78273;78274;78275;78276;78277;78278;78279;78280;78281;78282;78283;78284;78285;78286;78287;78288;78289 79523;79524;79525;79526;79527;79528;79529;79530;79531;79532;79533;79534;79535;79536;79537;79538;79539;79540;79541;79542;79543;79544;79545;79546;79547;79548;79549;79550;79551;79552;79553;79554;79555;79556;79557;79558;79559;79560;79561;79562;79563;79564;79565;79566;79567;79568;79569;79570;79571;79572;79573;79574;79575;79576;79577;79578;79579;79580;79581;79582;79583 79577 61 IKGEHPGLSIGDVAKK PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK KGEHPGLSIGDVAKKLGEMWNNTAADDKQP K I K K K L 1 0 0 1 0 0 1 3 1 2 1 3 0 0 1 1 0 0 0 1 0 0 16 2 1647.9308 P09429;Q5T7C4;B2RPK0 P09429 113 128 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3;4 3.8473E-13 99.011 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 5 9 2 2 0.9974 1.0118 14.146 24 Median 0.93351 0.98049 3.5625 4 0 Median 1.0065 0.99233 30.964 4 0 Median 0.91369 1.013 9.9166 5 0 Median 1.1047 1.0157 12.839 7 0 Median 0.99963 1.0937 0.61349 2 0 Median 1.1406 1.0225 4.4527 2 0 Median 505130000 237390000 267730000 49560000 24519000 25041000 15126000 7258000 7868300 57578000 28092000 29486000 370720000 171670000 199050000 10700000 5076700 5623400 1437600 774170 663470 15176 1915 15804 78290;78291;78292;78293;78294;78295;78296;78297;78298;78299;78300;78301;78302;78303;78304;78305;78306;78307;78308;78309;78310;78311;78312;78313;78314;78315 79584;79585;79586;79587;79588;79589;79590;79591;79592;79593;79594;79595;79596;79597;79598;79599;79600;79601;79602;79603;79604;79605;79606;79607;79608;79609;79610;79611;79612 79612 29 IKGPNAVQLVK RGSGTASDDEFENLRIKGPNAVQLVKTTPL ENLRIKGPNAVQLVKTTPLKPSPLPVIPDT R I K V K T 1 0 1 0 0 1 0 1 0 1 1 2 0 0 1 0 0 0 0 2 0 0 11 1 1165.7183 Q7Z6Z7 Q7Z6Z7 1916 1926 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00066541 87.639 By MS/MS By MS/MS By matching 1 1 1 0.99678 0.95217 2.4527 3 Median 0.86176 0.93858 NaN 1 0 Median 0.99678 0.95217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1033 0.98454 NaN 1 0 Median 29718000 13913000 15805000 15267000 7786200 7480500 13674000 5799300 7875000 0 0 0 0 0 0 0 0 0 776890 327520 449370 15177 3253 15805 78316;78317;78318 79613;79614;79615 79614 3 IKGYFDQELK KTPVTQVNEVTGTLRIKGYFDQELKAWLLE TGTLRIKGYFDQELKAWLLEKGF_______ R I K L K A 0 0 0 1 0 1 1 1 0 1 1 2 0 1 0 0 0 0 1 0 0 0 10 1 1239.6499 Q13405;H0YDP7 Q13405 149 158 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 0.016912 56.258 By MS/MS 1 1.0012 1.0251 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0012 1.0251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2058900 1079800 979100 0 0 0 0 0 0 2058900 1079800 979100 0 0 0 0 0 0 0 0 0 15178 2810 15806 78319 79616 79616 1 IKHSKPGSVPLVSEK QRIMKEARRRKEVNRIKHSKPGSVPLVSEK IKHSKPGSVPLVSEKKKHVVAVVK______ R I K E K K 0 0 0 0 0 0 1 1 1 1 1 3 0 0 2 3 0 0 0 2 0 0 15 2 1604.925 A0A087WT20;Q9NV06 A0A087WT20 574 588 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 0.0022083 33.796 By MS/MS By matching 1 1 0.65449 0.67604 6.6161 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65035 0.70842 NaN 1 0 Median 0.65865 0.64514 NaN 1 0 Median 2688000 1699500 988470 0 0 0 0 0 0 0 0 0 0 0 0 2103900 1375900 727970 584110 323620 260490 15179 13 15807 78320;78321 79617 79617 1 IKIEPDSEKDEVK MDESDKRKCSRSPKKIKIEPDSEKDEVKGS KKIKIEPDSEKDEVKGSDAAKGADQNEMDI K I K V K G 0 0 0 2 0 0 3 0 0 2 0 3 0 0 1 1 0 0 0 1 0 0 13 2 1528.7985 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1087 1099 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.031037 21.351 By matching By MS/MS 1 2 0.97386 1.0031 27.261 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59576 0.69023 NaN 1 0 Median 0.98175 1.0849 11.088 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4322600 2167200 2155400 0 0 0 0 0 0 1858100 1025700 832410 2464400 1141400 1323000 0 0 0 0 0 0 15180 2762 15808 78322;78323;78324 79618;79619;79620 79619 3 IKIIAPPER RMQKEITALAPSTMKIKIIAPPERKYSVWI APSTMKIKIIAPPERKYSVWIGGSILASLS K I K E R K 1 1 0 0 0 0 1 0 0 3 0 1 0 0 2 0 0 0 0 0 0 0 9 1 1035.6441 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76;Q562R1 P63261 327 335 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 2 0.0069009 81.296 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 4 1 0.8017 0.76668 13.427 13 Median 0.76243 0.75278 15.472 3 0 Median 0.8017 0.75346 3.9037 3 0 Median 0.65668 0.74789 NaN 1 0 Median 0.91864 0.80124 NaN 1 0 Median 0.79343 0.86374 16.534 4 0 Median 0.96632 0.88523 NaN 1 0 Median 134790000 72910000 61885000 80784000 43025000 37759000 16732000 8878000 7854300 13558000 7855100 5702900 3375400 1718500 1656800 19925000 11226000 8698800 420520 207370 213160 15181 2625;2630;2595;3035 15809 78325;78326;78327;78328;78329;78330;78331;78332;78333;78334;78335;78336;78337 79621;79622;79623;79624;79625;79626;79627;79628;79629;79630;79631;79632;79633;79634 79622 14 IKINEEFKNNK QQVFKNDARALEAARIKINEEFKNNKSETS EAARIKINEEFKNNKSETSSKKIEELMKIG R I K N K S 0 0 3 0 0 0 2 0 0 2 0 3 0 1 0 0 0 0 0 0 0 0 11 2 1375.746 Q5U5X0;D6RBV5 Q5U5X0 34 44 LYRM7 Complex III assembly factor LYRM7 yes no 3 0.00013074 70.488 By matching By MS/MS 1 1 1.0453 0.93836 6.8057 2 Median 0.88541 0.89427 NaN 1 0 Median 1.2341 0.98462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937600 1845800 2091800 1302400 702800 599570 2635200 1143000 1492200 0 0 0 0 0 0 0 0 0 0 0 0 15182 3108 15810 78338;78339 79635 79635 1 IKKEEDSAIPITVPGR LAASTNGSSITPAPKIKKEEDSAIPITVPG KKEEDSAIPITVPGRLPVSLAGHPVVAAQA K I K G R L 1 1 0 1 0 0 2 1 0 3 0 2 0 0 2 1 1 0 0 1 0 0 16 2 1751.9781 Q99856 Q99856 397 412 ARID3A AT-rich interactive domain-containing protein 3A yes yes 3 0.00022885 43.408 By MS/MS By MS/MS 1 1 0.87481 0.94664 7.6427 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7864 0.89684 NaN 1 0 Median 0.97317 0.99921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13270000 7474700 5794900 0 0 0 0 0 0 11773000 6673300 5099800 1496500 801420 695110 0 0 0 0 0 0 15183 3772 15811 78340;78341 79636;79637 79636 2 IKLEGGIK RIKQFTLEEKQRLEKIKLEGGIKGIGKTST EKQRLEKIKLEGGIKGIGKTSTNSSKNLSE K I K I K G 0 0 0 0 0 0 1 2 0 2 1 2 0 0 0 0 0 0 0 0 0 0 8 1 856.5382 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1208 1215 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.057513 55.531 By MS/MS By matching By matching 2 2 1 1.1 1.1441 11.268 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0949 1.2496 11.97 2 0 Median 1.1628 1.1307 1.6558 2 0 Median NaN NaN NaN 0 0 Median 1.0928 0.9919 NaN 1 0 Median 6366600 3017100 3349500 0 0 0 0 0 0 4886200 2342400 2543900 1041000 466300 574670 0 0 0 439420 208410 231010 15184 2762 15812 78342;78343;78344;78345;78346 79638 79638 1 IKLEGIITR IRQLQQENRQLLNERIKLEGIITRVETYLN QLLNERIKLEGIITRVETYLNENLRKRLDQ R I K T R V 0 1 0 0 0 0 1 1 0 3 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1041.6546 Q9UQE7 Q9UQE7 819 827 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0046326 87.308 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 2 1.2196 1.1714 16.185 10 Median 1.1913 1.24 NaN 1 0 Median 1.0733 0.98047 39.573 2 0 Median 1.0075 1.1436 NaN 1 0 Median 1.3018 1.2539 6.223 2 0 Median 1.0036 1.125 0.78431 2 0 Median 1.321 1.1534 6.3147 2 0 Median 158980000 76371000 82605000 5957000 2627000 3330000 3250200 1440200 1810000 52389000 25218000 27171000 11105000 4971900 6132700 72668000 35980000 36688000 13607000 6133400 7473500 15185 4362 15813 78347;78348;78349;78350;78351;78352;78353;78354;78355;78356 79639;79640;79641;79642;79643;79644;79645;79646 79643 8 IKLESQDLER QWNDEIRELLCQVVKIKLESQDLERNNKAQ CQVVKIKLESQDLERNNKAQAWEDCVKGFL K I K E R N 0 1 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1229.6616 Q9NPG3 Q9NPG3 529 538 UBN1 Ubinuclein-1 yes yes 3 0.063132 15.202 By matching By MS/MS By matching 1 2 1 1.3502 1.3543 14.721 4 Median 1.4205 1.4441 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0938 1.2025 20.471 2 0 Median 1.3919 1.3198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10483000 4323500 6159800 1112500 477170 635340 0 0 0 7430900 3111700 4319200 1939900 734590 1205300 0 0 0 0 0 0 15186 4051 15814 78357;78358;78359;78360 79647 79647 1 IKLGLKSLVSK ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV NNSRIKLGLKSLVSKGTLVQTKGTGASGSF R I K S K G 0 0 0 0 0 0 0 1 0 1 3 3 0 0 0 2 0 0 0 1 0 0 11 2 1184.7856 P10412;P16401;P16402;P16403 P16402 81 91 HIST1H1E;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 0.0010257 73.067 By MS/MS By matching 2 1 0.99587 0.96504 8.5047 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93668 1.0248 NaN 1 0 Median 1.0588 0.90871 NaN 1 0 Median 35241000 12190000 23050000 0 0 0 0 0 0 0 0 0 0 0 0 32056000 10615000 21440000 3185100 1574800 1610300 15187 2028;1937;2029 15815 78361;78362;78363 79648;79649;79650 79649 3 IKLQLWDTAGQER VDFFSRLLEIEPGKRIKLQLWDTAGQERFR KRIKLQLWDTAGQERFRSITRSYYRNSVGG R I K E R F 1 1 0 1 0 2 1 1 0 1 2 1 0 0 0 0 1 1 0 0 0 0 13 1 1556.8311 Q14964 Q14964 62 74 RAB39A Ras-related protein Rab-39A yes yes 2;3 9.6297E-06 126.67 By MS/MS By MS/MS By matching 2 1 2 1.1263 1.1711 20.55 5 Median 1.0996 1.1438 3.3405 2 0 Median 1.4287 1.3304 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1617 1.0284 35.085 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87306000 39653000 47653000 83320000 38003000 45317000 3178800 1279000 1899900 0 0 0 807450 371820 435620 0 0 0 0 0 0 15188 2902 15816 78364;78365;78366;78367;78368 79651;79652;79653;79654;79655;79656 79653 6 IKLWTMPISSVR VCESRYSAKTKSFKKIKLWTMPISSVRFVP FKKIKLWTMPISSVRFVPRDVPLPVVRVAS K I K V R F 0 1 0 0 0 0 0 0 0 2 1 1 1 0 1 2 1 1 0 1 0 0 12 1 1429.8115 Q86U86;E7EVG2;H0Y5B5 Q86U86 1073 1084 PBRM1 Protein polybromo-1 yes no 3 0.069272 13.137 By MS/MS 1 0.71106 0.84634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71106 0.84634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246300 1288900 957440 0 0 0 0 0 0 2246300 1288900 957440 0 0 0 0 0 0 0 0 0 15189 3273 15817 78369 79657 79657 1 IKLYSESLAR TDDYLDQPCYETINRIKLYSESLARYGKSP ETINRIKLYSESLARYGKSPYLYPLYGLGE R I K A R Y 1 1 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1178.6659 P31150;P50395;Q5SX87;Q5SX91 P50395 209 218 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2 0.0069178 65.305 By MS/MS By matching By matching 2 1 1 1.076 0.99112 11.355 4 Median 1.0603 1.0546 16.915 2 0 Median 1.1865 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97573 0.93737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30822000 14739000 16083000 17830000 9035700 8794800 10282000 4602800 5679500 0 0 0 2709300 1101100 1608200 0 0 0 0 0 0 15190 2411;2201 15818 78370;78371;78372;78373 79658 79658 1 IKNENTEGSPQEDGVELEGLK TIEMKAEAEKKNKKKIKNENTEGSPQEDGV EGSPQEDGVELEGLKQRLEKKQKREPGTKT K I K L K Q 0 0 2 1 0 1 5 3 0 1 2 2 0 0 1 1 1 0 0 1 0 0 21 1 2285.1023 P11388 P11388 1239 1259 TOP2A DNA topoisomerase 2-alpha yes yes 3 7.1146E-18 104.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 3 1 1.0253 1.066 27.872 11 Median NaN NaN NaN 0 0 Median 1.3089 1.2649 NaN 1 0 Median 0.68046 0.79203 21.417 3 0 Median 1.3877 1.3062 4.3681 3 0 Median 0.90134 1.0094 42.392 3 1 Median 1.0253 0.92888 NaN 1 0 Median 121410000 64814000 56592000 0 0 0 3376500 1348300 2028200 79676000 44004000 35672000 14635000 6065000 8569800 23030000 13052000 9977200 689030 343830 345200 15191 1963 15819 78374;78375;78376;78377;78378;78379;78380;78381;78382;78383;78384 79659;79660;79661;79662;79663;79664;79665;79666;79667 79666 9 IKNENTEGSPQEDGVELEGLKQR TIEMKAEAEKKNKKKIKNENTEGSPQEDGV SPQEDGVELEGLKQRLEKKQKREPGTKTKK K I K Q R L 0 1 2 1 0 2 5 3 0 1 2 2 0 0 1 1 1 0 0 1 0 0 23 2 2569.262 P11388 P11388 1239 1261 TOP2A DNA topoisomerase 2-alpha yes yes 4 4.9946E-05 34.914 By MS/MS By matching 2 1 1.1216 1.473 32.858 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90725 1.1132 40.451 2 0 Median NaN NaN NaN 0 0 Median 1.253 1.473 NaN 1 0 Median NaN NaN NaN 0 0 Median 21156000 9049200 12106000 0 0 0 0 0 0 17996000 7327800 10669000 0 0 0 3159100 1721500 1437600 0 0 0 15192 1963 15820 78385;78386;78387 79668;79669 79669 2 IKNEVDSTLTFR DLNKCGPMVLDALIKIKNEVDSTLTFRRSC LIKIKNEVDSTLTFRRSCREGICGSCAMNI K I K F R R 0 1 1 1 0 0 1 0 0 1 1 1 0 1 0 1 2 0 0 1 0 0 12 1 1421.7514 P21912;A0A087WWT1;A0A087WXX8 P21912 79 90 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 2;3 4.9556E-06 153.12 By MS/MS By MS/MS By MS/MS 4 2 2 1.0759 1.1152 73.186 7 Median 1.0732 1.113 7.9488 4 0 Median 1.7222 1.5868 9.8374 2 0 Median 0.20014 0.19205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 243850000 112610000 131240000 209470000 99160000 110310000 31847000 11552000 20295000 2531300 1899900 631420 0 0 0 0 0 0 0 0 0 15193 2093 15821 78388;78389;78390;78391;78392;78393;78394;78395 79670;79671;79672;79673;79674;79675;79676;79677;79678;79679;79680;79681;79682 79677 13 IKNEVDSTLTFRR DLNKCGPMVLDALIKIKNEVDSTLTFRRSC IKIKNEVDSTLTFRRSCREGICGSCAMNIN K I K R R S 0 2 1 1 0 0 1 0 0 1 1 1 0 1 0 1 2 0 0 1 0 0 13 2 1577.8526 P21912;A0A087WWT1;A0A087WXX8 P21912 79 91 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 3 1.7117E-06 97.463 By MS/MS By MS/MS 1 1 1.3505 1.3018 23.434 2 Median 1.0994 1.103 NaN 1 0 Median 1.659 1.5364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24063000 11492000 12571000 19116000 9414000 9701800 4947500 2077800 2869700 0 0 0 0 0 0 0 0 0 0 0 0 15194 2093 15822 78396;78397 79683;79684;79685;79686 79683 4 IKNVVHELR TDAPQVSHKPGGEPKIKNVVHELRITNQVI PGGEPKIKNVVHELRITNQVIYLNPPIEEC K I K L R I 0 1 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1106.656 Q14204 Q14204 955 963 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0088116 76.827 By MS/MS By matching By matching 1 1 1 1.0684 1.2082 7.7663 3 Median 1.0486 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0684 1.2355 NaN 1 0 Median 1.2972 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5225500 2417100 2808300 1859600 903100 956520 0 0 0 3005700 1367400 1638300 360140 146660 213480 0 0 0 0 0 0 15195 2865 15823 78398;78399;78400 79687 79687 1 IKNYILMR YSDSAVLKLAEPYGKIKNYILMRMKSQAFI LAEPYGKIKNYILMRMKSQAFIEMETREDA K I K M R M 0 1 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 1 0 0 0 8 1 1049.6056 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 523 530 MATR3 Matrin-3 yes no 2 0.010833 110.61 By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 1.0773 1.0857 10.094 8 Median NaN NaN NaN 0 0 Median 1.0035 0.95178 NaN 1 0 Median 1.0374 1.1748 5.5336 2 0 Median NaN NaN NaN 0 0 Median 1.1082 1.22 10.302 3 0 Plateau 1.1603 1.0225 2.8528 2 0 Median 153980000 72163000 81819000 0 0 0 1948600 752250 1196400 30051000 14801000 15250000 0 0 0 109370000 50625000 58747000 12610000 5983900 6625900 15196 297 15824 78401;78402;78403;78404;78405;78406;78407;78408 79688;79689;79690;79691;79692;79693;79694;79695;79696 79690 9 IKPAATSHVEGSGGVSAK PASFRKSTYWMKMRRIKPAATSHVEGSGGV AATSHVEGSGGVSAKGKRKPRQEEDEDYRE R I K A K G 3 0 0 0 0 0 1 3 1 1 0 2 0 0 1 3 1 0 0 2 0 0 18 1 1694.8951 G3XAG1;Q96ME7 G3XAG1 82 99 ZNF512 Zinc finger protein 512 yes no 2;3;4 0.0096516 26.541 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 4 1 14 5 0.85166 0.91088 21.943 26 Median NaN NaN NaN 0 0 Median 1.6059 1.512 26.928 2 0 Median 0.75897 0.86147 13.955 4 0 Median 1.0993 1.015 NaN 1 0 Median 0.80631 0.84826 10.568 14 0 Median 1.437 1.2537 17.672 5 0 Median 56510000 29961000 26549000 0 0 0 1901700 762800 1138900 4281300 2289500 1991700 131570 60212 71361 45182000 24909000 20273000 5013100 1939400 3073600 15197 1124 15825 78409;78410;78411;78412;78413;78414;78415;78416;78417;78418;78419;78420;78421;78422;78423;78424;78425;78426;78427;78428;78429;78430;78431;78432;78433;78434 79697;79698;79699;79700;79701;79702;79703;79704;79705;79706;79707;79708;79709;79710;79711;79712 79712 16 IKPHLMSQELPEDWDKQPVK AERITEFCHRFLEGKIKPHLMSQELPEDWD MSQELPEDWDKQPVKVLVGKNFEDVAFDEK K I K V K V 0 0 0 2 0 2 2 0 1 1 2 3 1 0 3 1 0 1 0 1 0 0 20 2 2417.2413 P07237;H7BZ94;H0Y3Z3 P07237 351 370 P4HB Protein disulfide-isomerase yes no 3 3.1878E-06 48.824 By MS/MS By matching 2 1 0.75193 0.76731 31.89 3 Median 0.61027 0.608 32.91 2 0 Median 0.93699 0.88701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37445000 20290000 17155000 35257000 19213000 16044000 2187900 1076400 1111500 0 0 0 0 0 0 0 0 0 0 0 0 15198 1883 15826 78435;78436;78437 79713;79714 79713 2 IKPLGPMLLNGLTK LQFVHHICITCPEIKIKPLGPMLLNGLTKL KIKPLGPMLLNGLTKLINEYKEDPKLLSMA K I K T K L 0 0 1 0 0 0 0 2 0 1 4 2 1 0 2 0 1 0 0 0 0 0 14 1 1493.9004 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 391 404 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 0.072505 11.055 By MS/MS By matching 1 1 0.72871 0.72857 1.1464 2 Median 0.71776 0.7345 NaN 1 0 Median 0.73983 0.72269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2610400 1392600 1217800 1820600 996920 823700 789740 395680 394060 0 0 0 0 0 0 0 0 0 0 0 0 15199 3116 15827 78438;78439 79715;79716 79715 2 IKPPTPAVSNVR IVEVLPNQPVKLVPKIKPPTPAVSNVRSVA VPKIKPPTPAVSNVRSVASRTLVRDLHLSI K I K V R S 1 1 1 0 0 0 0 0 0 1 0 1 0 0 3 1 1 0 0 2 0 0 12 1 1277.7456 A6NHR9;J3KTL8;A0A2R8YE92 A6NHR9 1495 1506 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 2.3325E-06 120.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 0.63154 0.67267 12.822 6 Median NaN NaN NaN 0 0 Median 0.81312 0.77721 NaN 1 1 Median 0.575 0.67267 3.1742 2 1 Median 0.81108 0.78301 NaN 1 0 Median 0.50087 0.56655 NaN 1 0 Median 0.69251 0.61516 NaN 1 0 Median 33453000 20932000 12521000 0 0 0 1545400 871500 673920 19372000 12558000 6813700 3836000 1993000 1843000 4762900 2977200 1785700 3936400 2531700 1404700 15200 518 15828 78440;78441;78442;78443;78444;78445;78446 79717;79718;79719;79720;79721;79722;79723;79724;79725;79726;79727;79728;79729 79719 13 IKPSESNVTILGR IVCWKPGKMEDDIDKIKPSESNVTILGRFD DKIKPSESNVTILGRFDYSQCDIWYMRFSM K I K G R F 0 1 1 0 0 0 1 1 0 2 1 1 0 0 1 2 1 0 0 1 0 0 13 1 1412.7987 E9PJK2;O75530;E9PMU3;H0YEL4 E9PJK2 263 275 EED Polycomb protein EED yes no 2;3 6.8823E-06 94.191 By MS/MS By MS/MS By matching 4 4 2 0.84189 0.87524 35.816 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77179 0.82191 8.0898 4 0 Median 1.016 0.96253 58.472 4 0 Median NaN NaN NaN 0 0 Median 0.97066 0.87995 31.881 2 0 Median 46176000 24042000 22134000 0 0 0 0 0 0 23601000 12673000 10928000 19068000 9719100 9348800 0 0 0 3507600 1650800 1856700 15201 944 15829 78447;78448;78449;78450;78451;78452;78453;78454;78455;78456 79730;79731;79732;79733;79734;79735;79736 79732 6 IKPSQNTETLELLLK VIEGNNCTFVRDLSRIKPSQNTETLELLLK IKPSQNTETLELLLKEFFEYFGNFAFDKNS R I K L K E 0 0 1 0 0 1 2 0 0 1 4 2 0 0 1 1 2 0 0 0 0 0 15 1 1725.9877 Q9NVV4 Q9NVV4 428 442 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 3 0.001648 35.35 By matching By matching By MS/MS By matching 1 2 1 2 1.1625 1.0846 18.01 6 Median 0.83862 0.79204 NaN 1 0 Median 1.2103 1.1373 9.9656 2 0 Median 0.90847 0.94774 NaN 1 0 Median 1.2521 1.2029 11.38 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24535000 12239000 12297000 4939500 2465500 2474000 4494300 1823200 2671100 14392000 7618600 6773900 709170 331440 377730 0 0 0 0 0 0 15202 4141 15830 78457;78458;78459;78460;78461;78462 79737;79738 79738 2 IKPVLMMNK CVQTETVLRQAIAERIKPVLMMNKMDRALL QAIAERIKPVLMMNKMDRALLELQLEPEEL R I K N K M 0 0 1 0 0 0 0 0 0 1 1 2 2 0 1 0 0 0 0 1 0 0 9 1 1072.6137 P13639 P13639 151 159 EEF2 Elongation factor 2 yes yes 2 0.0044563 89.369 By MS/MS By MS/MS By MS/MS By matching By matching 5 4 2 1 2 0.84399 0.81371 19.411 14 Median 1.0256 1.062 17.004 5 0 Median 0.82613 0.87676 10.157 4 0 Linear NaN NaN NaN 0 0 Median 0.85618 0.8364 2.1936 2 0 Median 0.59597 0.66977 NaN 1 0 Median 0.79263 0.69331 4.0944 2 0 Median 237310000 117320000 119990000 142060000 66729000 75331000 81766000 43386000 38380000 0 0 0 9552100 5135200 4416900 1364200 754010 610150 2569300 1319700 1249600 15203 1992 15831;15832 78463;78464;78465;78466;78467;78468;78469;78470;78471;78472;78473;78474;78475;78476 79739;79740;79741;79742;79743;79744;79745;79746 79740 775 8 IKQEILPEER SDRRTGKPIAVKLVKIKQEILPEERMNGQV VKLVKIKQEILPEERMNGQVVCAVPHNLES K I K E R M 0 1 0 0 0 1 3 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 10 1 1253.698 O75534 O75534 90 99 CSDE1 Cold shock domain-containing protein E1 yes yes 2;3 0.0017256 93.649 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.024 1.0207 13.002 7 Median 0.9907 1.0135 18.747 2 0 Median 1.1096 1.1075 11.535 2 0 Median 0.98793 1.1227 NaN 1 0 Median 0.98386 0.927 11.108 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21132000 9841200 11291000 4916700 2227200 2689500 6461400 2870800 3590600 2928100 1320700 1607500 6825700 3422500 3403200 0 0 0 0 0 0 15204 1684 15833 78477;78478;78479;78480;78481;78482;78483 79747;79748;79749;79750;79751;79752;79753;79754;79755 79747 9 IKQESNQIGPEGGILSSTTVPLVQASFPEGALTK IITKDFPQYFAVVSRIKQESNQIGPEGGIL VPLVQASFPEGALTKRIRVGLQAQPVPDEI R I K T K R 2 0 1 0 0 3 3 4 0 3 3 2 0 1 3 4 3 0 0 2 0 0 34 1 3495.8461 Q12955;A0A087WZ65;A0A087WTF3 Q12955 1140 1173 ANK3 Ankyrin-3 yes no 3 0.056312 8.4749 By matching By MS/MS By matching 1 2 1 0.46101 0.51034 34.099 4 Median 0.46136 0.4902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38447 0.44135 26.233 2 0 Median 0.87688 0.83529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5778500 3783600 1995000 512860 311990 200880 0 0 0 5123800 3395100 1728700 141890 76526 65364 0 0 0 0 0 0 15205 2773 15834 78484;78485;78486;78487 79756 79756 1 IKQHEGLATFYR LVPALEAFGLEGVFRIKQHEGLATFYRKSK VFRIKQHEGLATFYRKSKFSLLSQHDISFY R I K Y R K 1 1 0 0 0 1 1 1 1 1 1 1 0 1 0 0 1 0 1 0 0 0 12 1 1461.7728 F6T1Q0;Q6L8Q7 F6T1Q0 376 387 PDE12 2,5-phosphodiesterase 12 yes no 3 0.00019147 71.176 By MS/MS 1 0.88036 0.8835 NaN 1 Median 0.88036 0.8835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8690800 4454300 4236500 8690800 4454300 4236500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15206 1050 15835 78488 79757;79758 79757 2 IKQIKPLLSASSR DSKGKSKITPAMAARIKQIKPLLSASSRLG ARIKQIKPLLSASSRLGRALAELFGLLVKL R I K S R L 1 1 0 0 0 1 0 0 0 2 2 2 0 0 1 3 0 0 0 0 0 0 13 2 1439.8824 Q7Z6Z7 Q7Z6Z7 1046 1058 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.00089449 46.797 By MS/MS 1 0.76981 0.83775 NaN 1 Median 0.76981 0.83775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2871900 1499800 1372100 2871900 1499800 1372100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15207 3253 15836 78489 79759 79759 1 IKQITEEVER IDKQLELLAQDYKLRIKQITEEVERQVSTA DYKLRIKQITEEVERQVSTAMAEEIRRLSV R I K E R Q 0 1 0 0 0 1 3 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 10 1 1243.6772 O95140 O95140 419 428 MFN2 Mitofusin-2 yes yes 3 0.023159 25.474 By MS/MS 1 1.2313 1.2508 NaN 1 Median 1.2313 1.2508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625590 254890 370700 625590 254890 370700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15208 1747 15837 78490 79760 79760 1 IKQLQNISLAAASGGAK AGMTVIQWVSDFSERIKQLQNISLAAASGG QLQNISLAAASGGAKELKNIHVCLGGLFVP R I K A K E 4 0 1 0 0 2 0 2 0 2 2 2 0 0 0 2 0 0 0 0 0 0 17 1 1668.9523 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4486 4502 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.5695E-11 147.87 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 3 1 1 1 1.0205 1.1084 19.868 9 Median 0.96984 1.0564 7.1282 2 0 Median 0.86366 0.82242 NaN 1 0 Median 1.0256 1.1594 23.304 3 0 Plateau 1.1294 1.1474 NaN 1 0 Median 1.4156 1.4945 NaN 1 0 Median 1.2009 1.0716 NaN 1 0 Median 96490000 46521000 49968000 30499000 15071000 15427000 4298400 2018900 2279600 58415000 28112000 30302000 651910 302300 349610 1922700 667800 1254900 703080 348390 354690 15209 2865 15838 78491;78492;78493;78494;78495;78496;78497;78498;78499 79761;79762;79763;79764;79765;79766;79767 79765 7 IKREDYESLPK LFKYVGETQPTGQIKIKREDYESLPKEVAS GQIKIKREDYESLPKEVASAKPKVLLDVKL K I K P K E 0 1 0 1 0 0 2 0 0 1 1 2 0 0 1 1 0 0 1 0 0 0 11 2 1376.73 Q9Y3Z3;A0A2R8YCS7;A0A2R8YF18;A0A2R8YFV6 Q9Y3Z3 468 478 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 3 0.0006887 55.353 By MS/MS 1 1.0345 1.1199 NaN 1 Median 1.0345 1.1199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6975000 2986700 3988300 6975000 2986700 3988300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15210 4436 15839 78500 79768 79768 1 IKSDFFELLSNHHLDSQSR ARKKEKEDSKTRGEKIKSDFFELLSNHHLD FFELLSNHHLDSQSRWSKVKDKVESDPRYK K I K S R W 0 1 1 2 0 1 1 0 2 1 3 1 0 2 0 4 0 0 0 0 0 0 19 1 2272.1236 O14776;G3V220 O14776 795 813 TCERG1 Transcription elongation regulator 1 yes no 3;4 1.7603E-18 126.25 By matching By MS/MS By matching 1 2 1 1.0409 1.0864 28.115 4 Median 1.8259 1.8875 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94902 1.076 2.5242 2 0 Median 1.1212 1.0774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36652000 17948000 18704000 806690 258370 548330 0 0 0 35723000 17625000 18098000 121640 63898 57737 0 0 0 0 0 0 15211 1494 15840 78501;78502;78503;78504 79769;79770;79771 79771 3 IKSDHPGISITDLSK PMSAYMLWLNASREKIKSDHPGISITDLSK IKSDHPGISITDLSKKAGEIWKGMSKEKKE K I K S K K 0 0 0 2 0 0 0 1 1 3 1 2 0 0 1 3 1 0 0 0 0 0 15 1 1609.8675 Q08945;A0A0U1RRK2 Q08945 565 579 SSRP1 FACT complex subunit SSRP1 yes no 3 0.00011571 58.83 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 4 1.1569 1.1298 25.396 10 Median 0.74875 0.77051 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0384 1.1604 NaN 1 0 Median 2.3559 2.1189 NaN 1 0 Median 1.0613 1.1339 6.9299 3 0 Median 1.2084 1.0605 10.43 4 0 Median 85399000 40260000 45139000 7824400 4336200 3488200 0 0 0 9076400 4992300 4084100 903730 356150 547580 52638000 24106000 28532000 14956000 6469200 8486900 15212 2743 15841 78505;78506;78507;78508;78509;78510;78511;78512;78513;78514 79772;79773;79774;79775;79776;79777;79778;79779;79780;79781;79782;79783;79784;79785;79786 79778 15 IKSDHPGISITDLSKK PMSAYMLWLNASREKIKSDHPGISITDLSK KSDHPGISITDLSKKAGEIWKGMSKEKKEE K I K K K A 0 0 0 2 0 0 0 1 1 3 1 3 0 0 1 3 1 0 0 0 0 0 16 2 1737.9625 Q08945;A0A0U1RRK2 Q08945 565 580 SSRP1 FACT complex subunit SSRP1 yes no 4 0.0035429 26.808 By MS/MS By matching 1 1 0.89482 0.98485 35.314 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.134 1.2642 NaN 1 0 Median 0.70612 0.76723 NaN 1 0 Median 4044100 2094800 1949300 0 0 0 0 0 0 0 0 0 0 0 0 3582900 1856300 1726500 461240 238430 222810 15213 2743 15842 78515;78516 79787 79787 1 IKSDYAQLLEDMQNAFR SSMKFKDPLKDGEAKIKSDYAQLLEDMQNA SDYAQLLEDMQNAFRSLED___________ K I K F R S 2 1 1 2 0 2 1 0 0 1 2 1 1 1 0 1 0 0 1 0 0 0 17 1 2040.9939 P38606 P38606 597 613 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2;3 7.3971E-06 82.543 By MS/MS By matching By matching By matching 2 2 1 1 1.1414 1.0975 8.4599 6 Median 1.0714 1.0774 2.578 2 0 Median 1.2182 1.1194 2.7503 2 0 Median 1.2294 1.3121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0019 1.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median 25644000 11407000 14238000 19711000 9054900 10656000 5258400 1990000 3268500 327440 197580 129860 0 0 0 347960 164440 183510 0 0 0 15214 2276 15843 78517;78518;78519;78520;78521;78522 79788;79789;79790;79791 79789 4 IKSEHPGLSIGDTAK PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ K I K A K K 1 0 0 1 0 0 1 2 1 2 1 2 0 0 1 2 1 0 0 0 0 0 15 1 1551.8257 P26583;D6R9A6 P26583 113 127 HMGB2 High mobility group protein B2 yes no 2;3 9.6162E-26 195.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 5 2 3 0.92754 0.91039 10.414 19 Median 0.84038 0.83951 10.715 3 0 Plateau 1.0073 0.92137 14.082 2 0 Median 0.81857 0.86129 4.9966 4 0 Median 1.0841 0.97024 5.7209 5 0 Median 0.91855 0.95315 6.4668 2 0 Median 1.1237 0.97529 3.4431 3 0 Plateau 1286500000 636190000 650280000 51944000 26969000 24974000 9912500 4776200 5136200 573570000 301400000 272170000 600950000 279740000 321210000 27945000 13065000 14880000 22160000 10244000 11915000 15215 2146 15844 78523;78524;78525;78526;78527;78528;78529;78530;78531;78532;78533;78534;78535;78536;78537;78538;78539;78540;78541 79792;79793;79794;79795;79796;79797;79798;79799;79800;79801;79802;79803;79804;79805;79806;79807;79808;79809;79810;79811;79812;79813;79814;79815;79816;79817;79818;79819 79801 28 IKSEHPGLSIGDTAKK PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP K I K K K L 1 0 0 1 0 0 1 2 1 2 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1679.9206 P26583;D6R9A6 P26583 113 128 HMGB2 High mobility group protein B2 yes no 2;3;4 2.5475E-05 74.772 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 4 2 0.925 0.94787 11.621 14 Median 0.7917 0.83609 8.417 3 0 Plateau 1.0092 0.98757 0.59999 2 0 Median 0.88038 0.99336 3.6918 3 0 Plateau 1.0114 0.94358 5.5758 4 0 Median 0.83188 0.91019 22.716 2 0 Median NaN NaN NaN 0 0 Median 131240000 64879000 66365000 8914400 5067800 3846600 2487300 1133800 1353500 44776000 23450000 21326000 68145000 31586000 36559000 6921000 3640700 3280300 0 0 0 15216 2146 15845 78542;78543;78544;78545;78546;78547;78548;78549;78550;78551;78552;78553;78554;78555 79820;79821;79822;79823;79824;79825;79826;79827;79828;79829;79830;79831;79832;79833;79834;79835;79836;79837;79838;79839 79834 20 IKSPEDHIGAVLER SETDIVLKGVVQVEKIKSPEDHIGAVLERA KIKSPEDHIGAVLERAKPEYISKTYKIDSW K I K E R A 1 1 0 1 0 0 2 1 1 2 1 1 0 0 1 1 0 0 0 1 0 0 14 1 1562.8417 Q13823 Q13823 387 400 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 0.00033117 51.265 By MS/MS By MS/MS 3 1 0.62254 0.64964 13.032 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57772 0.59722 14.247 3 2 Median 0.81326 0.70666 NaN 1 0 Median 27510000 14494000 13017000 0 0 0 0 0 0 0 0 0 0 0 0 25109000 13650000 11459000 2401300 844010 1557300 15217 2839 15846 78556;78557;78558;78559 79840;79841;79842;79843;79844;79845 79840 6 IKSTNPGISIGDVAK PPSGFFLFCSEFRPKIKSTNPGISIGDVAK IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ K I K A K K 1 0 1 1 0 0 0 2 0 3 0 2 0 0 1 2 1 0 0 1 0 0 15 1 1498.8355 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 111 125 HMGB3 High mobility group protein B3 yes no 2;3 0.00011236 80.979 By MS/MS By MS/MS By matching 1 2 1 0.99664 0.94851 6.091 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94806 0.94613 NaN 1 0 Median 1.1154 1.0048 8.826 2 0 Median 0.89714 0.9509 NaN 1 0 Median NaN NaN NaN 0 0 Median 20658000 9805200 10852000 0 0 0 0 0 0 5290500 2499300 2791300 13238000 5963700 7274500 2128900 1342200 786670 0 0 0 15218 880 15847 78560;78561;78562;78563 79846;79847;79848;79849;79850 79848 5 IKSTNPGISIGDVAKK PPSGFFLFCSEFRPKIKSTNPGISIGDVAK KSTNPGISIGDVAKKLGEMWNNLNDSEKQP K I K K K L 1 0 1 1 0 0 0 2 0 3 0 3 0 0 1 2 1 0 0 1 0 0 16 2 1626.9305 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 111 126 HMGB3 High mobility group protein B3 yes no 4 0.00025183 41.695 By MS/MS 1 1.5005 1.3797 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5005 1.3797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504400 719890 784510 0 0 0 0 0 0 0 0 0 1504400 719890 784510 0 0 0 0 0 0 15219 880 15848 78564 79851 79851 1 IKTELNSSAESEQPLDK KLLKKEYKEDLEKSKIKTELNSSAESEQPL TELNSSAESEQPLDKTGHVKDTNQEDGVII K I K D K T 1 0 1 1 0 1 3 0 0 1 2 2 0 0 1 3 1 0 0 0 0 0 17 1 1887.9426 Q9Y5B6 Q9Y5B6 148 164 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 3 0.011481 23.1 By matching By MS/MS 1 1 0.86619 0.88088 23.01 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90566 1.0365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82843 0.74861 NaN 1 0 Median 3815600 1999500 1816000 0 0 0 0 0 0 2374100 1182000 1192100 0 0 0 0 0 0 1441400 817540 623900 15220 4455 15849 78565;78566 79852 79852 1 IKVAEDEAEAAAAAK AAMSLAGAEKNGLVKIKVAEDEAEAAAAAK IKVAEDEAEAAAAAKFTGLSKEELLKVAGS K I K A K F 7 0 0 1 0 0 3 0 0 1 0 2 0 0 0 0 0 0 0 1 0 0 15 1 1485.7675 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2;F5H867 F5GZS6 115 129 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.0015568 52.693 By MS/MS By matching 1 1 1.1215 1.1037 65.361 2 Median 1.6954 1.7522 NaN 1 0 Median 0.74184 0.69525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5321100 2746500 2574500 2520800 1100000 1420800 2800300 1646500 1153800 0 0 0 0 0 0 0 0 0 0 0 0 15221 1016 15850 78567;78568 79853 79853 1 IKVDEFVTHNLSFDEINK VESVPKLVSEYMSKKIKVDEFVTHNLSFDE DEFVTHNLSFDEINKAFELMHSGKSIRTVV K I K N K A 0 0 2 2 0 0 2 0 1 2 1 2 0 2 0 1 1 0 0 2 0 0 18 1 2147.0899 P11766 P11766 340 357 ADH5 Alcohol dehydrogenase class-3 yes yes 3;4 0.00096502 31.514 By MS/MS By matching By matching 2 3 1 1.1813 1.1751 22.724 6 Median 1.0173 1.0489 31.518 2 0 Median 1.3987 1.2605 26.315 3 0 Median 1.0435 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13834000 6054000 7779600 9809400 4197100 5612300 1968200 854780 1113400 2056000 1002200 1053900 0 0 0 0 0 0 0 0 0 15222 1970 15851 78569;78570;78571;78572;78573;78574 79854;79855;79856 79855 3 IKVFGPGIEGK FPARVKVEPAVDTSRIKVFGPGIEGKDVFR DTSRIKVFGPGIEGKDVFREATTDFTVDSR R I K G K D 0 0 0 0 0 0 1 3 0 2 0 2 0 1 1 0 0 0 0 1 0 0 11 1 1143.6652 O75369;E7EN95 O75369 1231 1241 FLNB Filamin-B yes no 2 0.0016887 71.349 By MS/MS By matching 2 1 0.88018 0.98116 14.172 3 Median 0.84428 0.87504 16.187 2 0 Median NaN NaN NaN 0 0 Median 0.88018 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19140000 9359200 9780500 16536000 8206800 8329400 0 0 0 2603500 1152300 1451200 0 0 0 0 0 0 0 0 0 15223 1664 15852 78575;78576;78577 79857 79857 1 IKVLEQDKAR QCTQVVQERESLLVKIKVLEQDKARLQRLE SLLVKIKVLEQDKARLQRLEDELNRAKSTL K I K A R L 1 1 0 1 0 1 1 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 10 2 1198.7034 P15924 P15924 1819 1828 DSP Desmoplakin yes yes 3 0.0011617 56.359 By matching By MS/MS By MS/MS 1 1 1 0.84117 0.98889 9.5924 3 Median 0.84034 0.88831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84117 0.98889 NaN 1 0 Median 1.1207 1.0757 NaN 1 0 Median 3143800 1538700 1605100 113140 52441 60701 0 0 0 0 0 0 0 0 0 1653200 895040 758150 1377500 591240 786260 15224 2021 15853 78578;78579;78580 79858;79859;79860;79861 79861 4 IKVPVDWSK ADLQDALVILQLYERIKVPVDWSKVNKPPY LQLYERIKVPVDWSKVNKPPYPKLGANMKK R I K S K V 0 0 0 1 0 0 0 0 0 1 0 2 0 0 1 1 0 1 0 2 0 0 9 1 1070.6124 P13797;A0A0A0MSQ0;H7C4N2 P13797 436 444 PLS3 Plastin-3 yes no 2 0.0094308 75.378 By MS/MS By MS/MS By matching 2 2 1 0.95295 0.87486 20.718 5 Median 0.86053 0.80511 11.75 2 0 Median 1.0693 0.99998 6.9935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69956 0.62349 NaN 1 0 Median 291480000 148600000 142880000 239050000 122900000 116140000 47629000 23170000 24459000 0 0 0 0 0 0 0 0 0 4808700 2526000 2282700 15225 1995 15854 78581;78582;78583;78584;78585 79862;79863;79864 79862 3 IKVYEMEQDKK KKEDFTMQISFLQEKIKVYEMEQDKKVENS LQEKIKVYEMEQDKKVENSNKEEIQEKETI K I K K K V 0 0 0 1 0 1 2 0 0 1 0 3 1 0 0 0 0 0 1 1 0 0 11 2 1409.7225 A0A0A0MRF6;Q99996;A0A0A0MRE9;A0A087WX84 A0A0A0MRF6 316 326 AKAP9 A-kinase anchor protein 9 yes no 3 0.054435 16.942 By MS/MS By matching By matching By matching By matching 3 2 2 1 2 22.141 23.808 60.165 10 Median 21.611 23.661 57.112 3 0 Median 29.833 32.652 52.132 2 0 Median NaN NaN NaN 0 0 Median 51.095 49.907 35.921 2 0 Median 18.415 21.556 NaN 1 0 Median 17.163 19.46 72.847 2 0 Median 767800000 28042000 739760000 154750000 7731600 147020000 275040000 6532000 268510000 0 0 0 92510000 1501300 91009000 190450000 10206000 180240000 55053000 2070600 52982000 15226 158 15855 78586;78587;78588;78589;78590;78591;78592;78593;78594;78595 79865 79865 1 IKWGDAGAEYVVESTGVFTTMEK NGNPITIFQERDPSKIKWGDAGAEYVVEST EYVVESTGVFTTMEKAGAHLQGGAKRVIIS K I K E K A 2 0 0 1 0 0 3 3 0 1 0 2 1 1 0 1 3 1 1 3 0 0 23 1 2517.2097 P04406;E7EUT5 P04406 85 107 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 1.808E-11 50.827 By matching By MS/MS 1 1 1.1705 1.0749 0.14499 2 Median 1.1495 1.076 NaN 1 0 Median 1.1919 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4492900 1932800 2560100 1094200 493150 601020 3398700 1439600 1959100 0 0 0 0 0 0 0 0 0 0 0 0 15227 1850 15856 78596;78597 79866 79866 1 IKYDPLKEEK AVLEEIYLLIVPSSRIKYDPLKEEKQLMEA VPSSRIKYDPLKEEKQLMEAKQQELKRIEE R I K E K Q 0 0 0 1 0 0 2 0 0 1 1 3 0 0 1 0 0 0 1 0 0 0 10 2 1261.6918 Q96RL7 Q96RL7 96 105 VPS13A Vacuolar protein sorting-associated protein 13A yes yes 3 0.0064006 37.327 By matching By MS/MS 1 1 0.57977 0.64311 8.0907 2 Median 0.51418 0.60735 NaN 1 0 Median 0.65373 0.68098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3364000 2015300 1348700 1483300 999400 483900 1880700 1015900 864760 0 0 0 0 0 0 0 0 0 0 0 0 15228 3726 15857 78598;78599 79867 79867 1 IKYFEGVSPK GFYKLLSITVRNAKKIKYFEGVSPKSLKHS RNAKKIKYFEGVSPKSLKHSPEDPEKYSCF K I K P K S 0 0 0 0 0 0 1 1 0 1 0 2 0 1 1 1 0 0 1 1 0 0 10 1 1166.6336 P78527 P78527 680 689 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0032061 91.867 By MS/MS 1 0.53776 0.60887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53776 0.60887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21041000 15373000 5668600 0 0 0 0 0 0 21041000 15373000 5668600 0 0 0 0 0 0 0 0 0 15229 2647 15858 78600 79868 79868 1 IKYPENFFLLR GKQSLETICLLLAYKIKYPENFFLLRGNHE LAYKIKYPENFFLLRGNHECASINRIYGFY K I K L R G 0 1 1 0 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 11 1 1438.7973 P62140;E7ETD8;C9J9S3;C9JP48;P62136;E9PMD7;F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 P62136 112 122 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2;3 6.3289E-05 110.87 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 4 4 3 3 2 0.98805 0.94749 12.498 20 Median 1.0777 1.0857 11.736 4 0 Linear 1.0855 0.97328 15.827 4 0 Linear 0.90311 0.97815 9.6604 4 0 Median 1.0313 0.94417 8.0448 3 0 Median 0.98914 1.0376 14.838 3 0 Median 0.99945 0.90993 3.1465 2 0 Median 119340000 62632000 56708000 37022000 19510000 17512000 11076000 5527700 5548600 43436000 22615000 20821000 11611000 5614400 5997000 14222000 8348800 5872900 1973200 1016000 957140 15230 2569;1074;2570 15859 78601;78602;78603;78604;78605;78606;78607;78608;78609;78610;78611;78612;78613;78614;78615;78616;78617;78618;78619;78620 79869;79870;79871;79872;79873;79874;79875;79876;79877;79878;79879;79880;79881;79882;79883;79884;79885 79879 17 ILAAETDR YENKDSTNPRKRNQRILAAETDRLSYVGNN PRKRNQRILAAETDRLSYVGNNFGTGALKC R I L D R L 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 887.47125 Q9GZS1;E7EX70 Q9GZS1 59 66 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 2 0.0064162 71.342 By matching By MS/MS By matching 2 4 1 1.1295 1.0049 8.8136 7 Median NaN NaN NaN 0 0 Median 1.1859 1.0014 0.48267 2 0 Median 1.1233 1.1122 10.157 4 0 Median NaN NaN NaN 0 0 Median 0.78085 0.94825 NaN 1 0 Median NaN NaN NaN 0 0 Median 13081000 5958400 7122200 0 0 0 5187200 2220100 2967100 7855500 3723300 4132200 0 0 0 37987 15067 22919 0 0 0 15231 3913 15860 78621;78622;78623;78624;78625;78626;78627 79886;79887 79887 2 ILAAIIMK NTLTNSFQPSLLGRKILAAIIMKKDSEDMG PSLLGRKILAAIIMKKDSEDMGVVVSLGTG K I L M K K 2 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 0 8 0 871.5565 P55265;A0A3B3IRQ9 P55265 868 875 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.010043 59.641 By matching By matching By MS/MS 1 1 2 1.2682 1.223 21.044 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2001 1.31 NaN 1 0 Median 1.3401 1.1417 NaN 1 0 Median 1.3292 1.387 32.795 2 0 Median NaN NaN NaN 0 0 Median 10232000 4587700 5644500 0 0 0 0 0 0 2870700 1107600 1763100 389910 186190 203720 6971600 3293900 3677600 0 0 0 15232 2498 15861 78628;78629;78630;78631 79888;79889 79888 2 ILAAILHLGNLK KVIGFKPEEIQTVYKILAAILHLGNLKFVV VYKILAAILHLGNLKFVVDGDTPLIENGKV K I L L K F 2 0 1 0 0 0 0 1 1 2 4 1 0 0 0 0 0 0 0 0 0 0 12 0 1274.8074 K7EIG7;O94832;J3QRN6;J3KRL0 K7EIG7 182 193 MYO1D Unconventional myosin-Id yes no 2 0.0020006 49.813 By MS/MS By matching 2 1 1.2477 1.0769 8.7368 3 Median NaN NaN NaN 0 0 Median 1.2649 1.1267 11.789 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2477 1.0769 NaN 1 0 Median 2371500 1027400 1344100 0 0 0 2295800 992600 1303200 0 0 0 0 0 0 0 0 0 75642 34760 40882 15233 1359 15862 78632;78633;78634 79890 79890 1 ILAAPNTFFEPR DTVAVKETSLVEPEKILAAPNTFFEPRKEV PEKILAAPNTFFEPRKEVTMTMTSEETKDE K I L P R K 2 1 1 0 0 0 1 0 0 1 1 0 0 2 2 0 1 0 0 0 0 0 12 0 1374.7296 D6RJB7;Q8N7Z5 D6RJB7 187 198 ANKRD31 Putative ankyrin repeat domain-containing protein 31 yes no 2 0.0095072 37.476 By matching By MS/MS By MS/MS 1 1 1 1.0532 0.98831 4.4169 3 Median 1.0532 0.98831 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93742 0.91704 NaN 1 0 Median 1.1575 0.99148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173690000 75017000 98673000 1478100 588150 889910 0 0 0 23563000 13151000 10412000 148650000 61279000 87371000 0 0 0 0 0 0 15234 830 15863 78635;78636;78637 79891;79892;79893 79892 3 ILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR KIQLQDAGRIAAQRKILAAQGQLSAQGGAQ EAPAAPRPTATQLTRDLLRSRGIAGLYKGL K I L T R D 8 2 0 0 0 5 1 3 0 1 3 0 0 0 4 2 3 0 0 1 0 0 33 1 3255.7324 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;K4DIA8;K4DIB8;E9PS95 Q9H936 143 175 SLC25A22 Mitochondrial glutamate carrier 1 yes no 3;4 2.2171E-38 95.212 By MS/MS 2 0.55569 0.59823 4.4703 2 Median 0.55569 0.59823 4.4703 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36555000 25497000 11058000 36555000 25497000 11058000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15235 943 15864 78638;78639 79894;79895 79895 2 ILAASWPQNREDEEKQK SDEEEGTSSQAEAARILAASWPQNREDEEK AASWPQNREDEEKQKLKGGPKKTKREKKAA R I L Q K L 2 1 1 1 0 2 3 0 0 1 1 2 0 0 1 1 0 1 0 0 0 0 17 2 2041.0229 Q01831 Q01831 899 915 XPC DNA repair protein complementing XP-C cells yes yes 3 0.06802 9.5802 By MS/MS 1 0.90766 1.0343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90766 1.0343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2979700 1690600 1289100 0 0 0 0 0 0 2979700 1690600 1289100 0 0 0 0 0 0 0 0 0 15236 2693 15865 78640 79896 79896 1 ILADLNQQAPAPAPAER RRDGKDSASLFVVARILADLNQQAPAPAPA ADLNQQAPAPAPAERREGAAARKARTPCRL R I L E R R 5 1 1 1 0 2 1 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 17 0 1773.9373 A0A087X1K6;Q9Y2Y9 A0A087X1K6 67 83 KLF13 Krueppel-like factor 13 yes no 2 3.0376E-13 117.98 By MS/MS By MS/MS 1 1 0.79439 0.74071 10.396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69586 0.68821 NaN 1 0 Median 0.90686 0.79721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4784700 2504800 2279900 0 0 0 0 0 0 4066000 2140500 1925500 718700 364250 354450 0 0 0 0 0 0 15237 121 15866 78641;78642 79897;79898;79899 79897 3 ILADNPR CPAGGCLVALTCDYRILADNPRYCIGLNET VALTCDYRILADNPRYCIGLNETQLGIIAP R I L P R Y 1 1 1 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 797.43955 P42126;Q96DC0;H3BS70 P42126 165 171 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 0.034996 60.788 By MS/MS 1 1.0554 0.99536 NaN 1 Median 1.0554 0.99536 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3056300 825570 2230700 3056300 825570 2230700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15238 2305 15867 78643 79900 79900 1 ILADPSDDTK DVAYRCGYFDEEMNRILADPSDDTKGFFDP EEMNRILADPSDDTKGFFDPNTHENLTYLQ R I L T K G 1 0 0 3 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1073.5241 P58107;A0A075B730 P58107 1717 1726 EPPK1 Epiplakin yes no 2 0.00075444 71.614 By matching By MS/MS 1 1 1.3392 1.2467 33.107 2 Median 1.5915 1.5755 NaN 1 0 Median 1.127 0.98648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7847800 3668500 4179400 1514300 388070 1126300 6333500 3280400 3053100 0 0 0 0 0 0 0 0 0 0 0 0 15239 2520 15868 78644;78645 79901;79902 79901 2 ILADQQDKYMK EEISELFYDAKSSAKILADQQDKYMK____ SSAKILADQQDKYMK_______________ K I L M K - 1 0 0 2 0 2 0 0 0 1 1 2 1 0 0 0 0 0 1 0 0 0 11 1 1351.6806 Q9Y265;H7C4G5 Q9Y265 446 456 RUVBL1 RuvB-like 1 yes no 2;3 0.0010229 57.598 By MS/MS By matching By matching By MS/MS 2 1 1 1 0.99314 0.95038 15.337 5 Median 0.98246 0.94183 1.2781 2 0 Median 0.97941 0.92377 NaN 1 0 Median 1.1279 1.1901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.197 1.277 NaN 1 0 Median NaN NaN NaN 0 0 Median 21125000 10252000 10873000 13465000 6907500 6557700 697680 343210 354460 1882000 667130 1214900 0 0 0 5080200 2334000 2746200 0 0 0 15240 4375 15869 78646;78647;78648;78649;78650 79903;79904;79905;79906 79906 4 ILAFPCNQFGK QLVDLHARYAECGLRILAFPCNQFGKQEPG CGLRILAFPCNQFGKQEPGSNEEIKEFAAG R I L G K Q 1 0 1 0 1 1 0 1 0 1 1 1 0 2 1 0 0 0 0 0 0 0 11 0 1293.654 K7ERP4;A0A087X2I2;A0A087WT12;P36969;K7EKX7;R4GNE4;K7ENB4;K7EJ20;A0A0A0MTT1 K7ERP4 57 67 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 2 0.030374 31.372 By MS/MS By matching 1 1 0.70858 0.6368 25.972 2 Median NaN NaN NaN 0 0 Median 0.88464 0.76517 NaN 1 0 Median 0.56756 0.52996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2528700 1395400 1133400 0 0 0 1841000 884080 956920 687740 511300 176440 0 0 0 0 0 0 0 0 0 15241 12 15870 78651;78652 79907 79907 1 ILAGDKNYITMDELRR TADTDTADQVMASFKILAGDKNYITMDELR LAGDKNYITMDELRRELPPDQAEYCIARMA K I L R R E 1 2 1 2 0 0 1 1 0 2 2 1 1 0 0 0 1 0 1 0 0 0 16 2 1906.9935 P12814;H9KV75;H0YJW3 P12814 835 850 ACTN1 Alpha-actinin-1 yes no 3;4 3.6363E-05 67.115 By MS/MS By matching 2 2 0.95898 1.0673 21.068 4 Median 1.176 1.2667 1.3344 2 0 Median 0.76727 0.88168 4.1472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52371000 23815000 28556000 51354000 23354000 28001000 1016700 461640 555110 0 0 0 0 0 0 0 0 0 0 0 0 15242 1983 15871 78653;78654;78655;78656 79908;79909;79910 79909 3 ILAGLGFDPEMQNRPTQK LRATGAAAAEAKARRILAGLGFDPEMQNRP GLGFDPEMQNRPTQKFSGGWRMRVSLARAL R I L Q K F 1 1 1 1 0 2 1 2 0 1 2 1 1 1 2 0 1 0 0 0 0 0 18 1 2014.0306 Q8NE71;H0YGW7 Q8NE71 434 451 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 1.8047E-06 74.141 By MS/MS By matching By matching By MS/MS By matching 1 1 2 1 1 0.85476 0.83199 7.5893 6 Median 0.85358 0.88929 NaN 1 0 Median 0.85297 0.81061 NaN 1 0 Median 0.79706 0.87372 9.4744 2 0 Median 0.88151 0.84714 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85594 0.75239 NaN 1 0 Median 52350000 29672000 22677000 10751000 6048800 4701700 1656800 801240 855530 30963000 18167000 12796000 8405600 4416700 3988900 0 0 0 573590 238110 335480 15243 3427 15872 78657;78658;78659;78660;78661;78662 79911;79912;79913 79911 3 ILAHLWHLGYSPEDIIGNIFR MIQHCVNANIDEAYKILAHLWHLGYSPEDI HLGYSPEDIIGNIFRVCKTFQMAEYLKLEF K I L F R V 1 1 1 1 0 0 1 2 2 4 3 0 0 1 1 1 0 1 1 0 0 0 21 0 2463.3063 P35250;A0A087WVY3;H7C5P4 P35250 281 301 RFC2 Replication factor C subunit 2 yes no 3 4.7321E-07 48.112 By MS/MS 1 0.95343 0.82223 NaN 1 Median NaN NaN NaN 0 0 Median 0.95343 0.82223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2806100 1329600 1476500 0 0 0 2806100 1329600 1476500 0 0 0 0 0 0 0 0 0 0 0 0 15244 2238 15873 78663 79914 79914 1 ILAHNNFVGR KEAKDTKTADEVPLKILAHNNFVGRLIGKE EVPLKILAHNNFVGRLIGKEGRNLKKVEQD K I L G R L 1 1 2 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1139.62 Q9NZI8;O00425 Q9NZI8 281 290 IGF2BP1;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3 no no 2 1.9692E-05 147.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 1.2034 1.0363 6.358 10 Median 1.0445 0.98109 NaN 1 0 Median 1.2134 1.0478 NaN 1 0 Median 1.0753 1.0943 NaN 1 0 Median 1.2343 1.0489 6.0895 2 1 Median 1.0833 1.1048 12.949 2 1 Median 1.2631 1.0328 2.9492 3 0 Median 154360000 71017000 83344000 47642000 23336000 24306000 31323000 13652000 17672000 12121000 5955700 6165300 4924100 2121600 2802400 10292000 4663900 5628100 48060000 21288000 26772000 15245 4188;1462 15874 78664;78665;78666;78667;78668;78669;78670;78671;78672;78673 79915;79916;79917;79918;79919;79920;79921;79922;79923;79924;79925;79926;79927;79928;79929;79930;79931 79922 17 ILAIELENLK KELRDQIVSVQEEKKILAIELENLKSKLVE QEEKKILAIELENLKSKLVEVIEEVNKVKQ K I L L K S 1 0 1 0 0 0 2 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1154.6911 A0MZ66 A0MZ66 160 169 KIAA1598 Shootin-1 yes yes 2 0.0095388 45.081 By MS/MS By matching 1 2 0.9322 0.82501 22.682 3 Median 0.82544 0.81907 NaN 1 0 Median 1.1324 1.0022 27.52 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3877800 1918700 1959200 1715600 850960 864670 2162200 1067700 1094500 0 0 0 0 0 0 0 0 0 0 0 0 15246 490 15875 78674;78675;78676 79932 79932 1 ILAIGLINEALDEGDAQK CVDHVNLVVQEEHERILAIGLINEALDEGD IGLINEALDEGDAQKTLQALQIPAAKLEGV R I L Q K T 3 0 1 2 0 1 2 2 0 3 3 1 0 0 0 0 0 0 0 0 0 0 18 0 1882.0048 P46940;A0A0J9YXZ5 P46940 539 556 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.5464E-13 103.75 By MS/MS By MS/MS By MS/MS 3 5 1 0.92876 0.81553 21.079 9 Median 0.77985 0.77302 17.84 3 0 Median 0.92876 0.81553 7.913 5 2 Median 1.3105 1.4532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28561000 13582000 14979000 5457700 2816900 2640900 22265000 10399000 11867000 837740 366670 471070 0 0 0 0 0 0 0 0 0 15247 2350 15876 78677;78678;78679;78680;78681;78682;78683;78684;78685 79933;79934;79935;79936;79937;79938;79939 79939 7 ILALASFEVEK SQFEKVSTDLGSGDKILALASFEVEKTKK_ SGDKILALASFEVEKTKK____________ K I L E K T 2 0 0 0 0 0 2 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1218.686 Q8WZA0 Q8WZA0 177 187 LZIC Protein LZIC yes yes 2 0.0039952 48.796 By matching By MS/MS 2 2 0.76434 0.78871 6.3344 4 Median 0.7628 0.75128 0.32564 2 0 Median NaN NaN NaN 0 0 Median 0.77516 0.83703 1.8574 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16147000 9036500 7110200 5708100 3421100 2287000 0 0 0 10439000 5615500 4823200 0 0 0 0 0 0 0 0 0 15248 3525 15877 78686;78687;78688;78689 79940;79941 79940 2 ILALDCGLK SIKTPRVFNTGGAPRILALDCGLKYNQIRC TGGAPRILALDCGLKYNQIRCLCQRGAEVT R I L L K Y 1 0 0 1 1 0 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1001.558 F8VPD4;P27708 F8VPD4 178 186 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.025538 37.558 By MS/MS By matching 1 1 0.98294 0.95227 0.73762 2 Median NaN NaN NaN 0 0 Median 1.078 0.95725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89627 0.94732 NaN 1 0 Median NaN NaN NaN 0 0 Median 4596600 2262700 2333800 0 0 0 3400600 1666700 1733900 0 0 0 0 0 0 1195900 595980 599960 0 0 0 15249 1057 15878 78690;78691 79942 79942 1 ILALEKEKEQLQK CTGSSEHWKPELEEKILALEKEKEQLQKKL EKILALEKEKEQLQKKLQEALTSRKAILKK K I L Q K K 1 0 0 0 0 2 3 0 0 1 3 3 0 0 0 0 0 0 0 0 0 0 13 2 1568.9138 Q14789;E7EU81 Q14789 1166 1178 GOLGB1 Golgin subfamily B member 1 yes no 3 9.0344E-05 78.705 By MS/MS 1 1.1265 1.3307 NaN 1 Median 1.1265 1.3307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9136700 3878800 5257900 9136700 3878800 5257900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15250 2900 15879 78692 79943 79943 1 ILALSQNEPK QRIPVTRALQREALKILALSQNEPKRPMSG REALKILALSQNEPKRPMSGEYGPASVPEY K I L P K R 1 0 1 0 0 1 1 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1111.6237 D6RB01;Q9Y6X4 D6RB01 205 214 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 0.009272 64.42 By MS/MS By MS/MS 1 1 1.3487 1.1198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3487 1.1198 NaN 1 1 Median 1063400 421170 642190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1063400 421170 642190 15251 814 15880 78693;78694 79944;79945 79944 2 ILALVPETIHDELQQSFQK LVNQDILENKESWDKILALVPETIHDELQQ VPETIHDELQQSFQKSHNSLQRWEHLKKVA K I L Q K S 1 0 0 1 0 3 2 0 1 2 3 1 0 1 1 1 1 0 0 1 0 0 19 0 2208.179 P49642;F8VNY2 P49642 243 261 PRIM1 DNA primase small subunit;DNA primase yes no 3 4.0742E-05 40.856 By MS/MS By MS/MS By matching 1 1 1 0.73365 0.7097 22.42 3 Median 0.7328 0.70809 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73365 0.7097 NaN 1 0 Median 1.1725 1.0453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15885000 8675200 7209800 2149500 1232400 917010 0 0 0 11792000 6561900 5230000 1943600 880810 1062800 0 0 0 0 0 0 15252 2388 15881 78695;78696;78697 79946;79947;79948;79949 79948 4 ILANVTEDAKR ADVKHVFRLCGTDEKILANVTEDAKRLIAV TDEKILANVTEDAKRLIAVADSVLTKVVGD K I L K R L 2 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1228.6776 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1119 1129 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2;3 5.0177E-05 99.568 By MS/MS By MS/MS 2 3 1.4048 1.3663 21.976 5 Median 1.0052 1.0293 12.536 2 0 Median 1.4761 1.375 11.675 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9954400 4594200 5360200 3078800 1733200 1345700 6875500 2861000 4014500 0 0 0 0 0 0 0 0 0 0 0 0 15253 189 15882 78698;78699;78700;78701;78702 79950;79951;79952;79953 79952 4 ILAPYLEMK EQIEVFANKLGEQWKILAPYLEMKDSEIRQ LGEQWKILAPYLEMKDSEIRQIECDSEDMK K I L M K D 1 0 0 0 0 0 1 0 0 1 2 1 1 0 1 0 0 0 1 0 0 0 9 0 1076.594 A0A087WWS1;Q96FV9 A0A087WWS1 587 595 THOC1 THO complex subunit 1 yes no 2 0.0008305 95.531 By MS/MS By matching 2 1 0.83807 0.84015 5.2896 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81357 0.81939 7.1962 2 1 Median 0.96729 0.84015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55410000 30495000 24915000 0 0 0 0 0 0 53941000 29748000 24193000 1468200 746520 721640 0 0 0 0 0 0 15254 62 15883;15884 78703;78704;78705 79954;79955;79956 79954 24 3 ILAPYTDFHYR PKTRQYVRADVELERILAPYTDFHYRHSPD ELERILAPYTDFHYRHSPDTAEGQLKEDRE R I L Y R H 1 1 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 0 2 0 0 0 11 0 1394.6983 Q6R327 Q6R327 253 263 RICTOR Rapamycin-insensitive companion of mTOR yes yes 3 0.00098105 49.5 By MS/MS By matching 2 1 0.89295 0.86978 30.481 3 Median 0.7285 0.71965 26.796 2 0 Median 1.2639 1.0883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5639500 3089300 2550300 4915100 2768300 2146800 724430 320950 403480 0 0 0 0 0 0 0 0 0 0 0 0 15255 3179 15885 78706;78707;78708 79957 79957 1 ILAQATSDLVNAIK FSSMGDAGEMVRQARILAQATSDLVNAIKA RILAQATSDLVNAIKADAEGESDLENSRKL R I L I K A 3 0 1 1 0 1 0 0 0 2 2 1 0 0 0 1 1 0 0 1 0 0 14 0 1455.8297 Q9Y490 Q9Y490 828 841 TLN1 Talin-1 yes yes 2 2.3576E-08 118.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 2 1 1 1.1811 1.0707 29.218 12 Median 1.0027 0.96144 29.26 3 0 Median 1.2318 1.0904 9.0233 4 0 Median 1.0439 1.1514 NaN 1 0 Median 1.0777 0.95079 14.704 2 0 Median 2.4087 2.5258 NaN 1 1 Median 1.1549 0.97215 NaN 1 0 Median 133910000 60004000 73901000 35656000 17636000 18020000 76860000 33133000 43727000 13754000 6563600 7190900 1426500 662980 763470 4800000 1386700 3413300 1408500 621640 786850 15256 4441 15886 78709;78710;78711;78712;78713;78714;78715;78716;78717;78718;78719;78720 79958;79959;79960;79961;79962;79963;79964;79965;79966;79967 79962 10 ILAQDVAQLK EEAKRHLNDLLEDRKILAQDVAQLKEKKES LEDRKILAQDVAQLKEKKESGENPPPKLRR K I L L K E 2 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1097.6445 O95239 O95239 773 782 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.00038123 103.56 By MS/MS By MS/MS By matching By matching 1 2 1 3 1.0575 0.94407 13.808 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1068 1.1788 NaN 1 0 Median 1.0724 0.9491 0.75134 2 0 Median 0.8724 0.91931 NaN 1 0 Median 0.92246 0.78718 11.108 3 0 Median 43651000 21531000 22120000 0 0 0 0 0 0 26911000 13299000 13613000 10599000 5050100 5549200 2967000 1513900 1453100 3173500 1668200 1505300 15257 1757 15887 78721;78722;78723;78724;78725;78726;78727 79968;79969;79970;79971;79972;79973 79973 6 ILAQDVAQLKEK EEAKRHLNDLLEDRKILAQDVAQLKEKKES DRKILAQDVAQLKEKKESGENPPPKLRRRT K I L E K K 2 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1354.782 O95239 O95239 773 784 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.0004706 52.555 By MS/MS 1 0.9369 1.0722 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9369 1.0722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3041400 1147600 1893800 0 0 0 0 0 0 3041400 1147600 1893800 0 0 0 0 0 0 0 0 0 15258 1757 15888 78728 79974 79974 1 ILAQITGTEHLK DWRPRTGTTQSRSFRILAQITGTEHLKESE SFRILAQITGTEHLKESEADNTKKANNSQE R I L L K E 1 0 0 0 0 1 1 1 1 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1322.7558 Q96HC4;H0Y8Y3;H0YBI4 Q96HC4 285 296 PDLIM5 PDZ and LIM domain protein 5 yes no 3 0.0033049 36.284 By matching By MS/MS By MS/MS 2 2 2 1.3161 1.2299 33.85 6 Median 1.6908 1.6632 10.633 2 0 Median NaN NaN NaN 0 0 Median 0.95785 0.99103 49.369 2 0 Median 1.2479 1.0593 2.2941 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24473000 9946200 14527000 3572400 1277000 2295400 0 0 0 18269000 7590800 10678000 2632100 1078400 1553600 0 0 0 0 0 0 15259 3665 15889 78729;78730;78731;78732;78733;78734 79975;79976;79977;79978;79979;79980 79978 6 ILAQSASVEEVFR PSAVKQSDTMTEKERILAQSASVEEVFRLQ ERILAQSASVEEVFRLQQALSDAENEIMRL R I L F R L 2 1 0 0 0 1 2 0 0 1 1 0 0 1 0 2 0 0 0 2 0 0 13 0 1447.7671 H0YJ97;Q15643 H0YJ97 122 134 TRIP11 Thyroid receptor-interacting protein 11 yes no 2 1.7225E-05 85.958 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15260 1186 15890 78735 79981 79981 1 ILAQSNNQQLR RVTFNIPREAAERLRILAQSNNQQLRDLGI ERLRILAQSNNQQLRDLGILSVQIEGEGAI R I L L R D 1 1 2 0 0 3 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1283.6946 Q14686;F6M2K4;F6M2K2 Q14686 110 120 NCOA6 Nuclear receptor coactivator 6 yes no 2 0.028305 49.813 By MS/MS 1 0.86994 0.96621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86994 0.96621 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1486700 727370 759300 0 0 0 0 0 0 1486700 727370 759300 0 0 0 0 0 0 0 0 0 15261 2891 15891 78736 79982 79982 1 ILAQVVGDVDTSLPR SQRSFVEFILEPLYKILAQVVGDVDTSLPR ILAQVVGDVDTSLPRTLDELGIHLTKEELK K I L P R T 1 1 0 2 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 3 0 0 15 0 1581.8726 Q15029 Q15029 380 394 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 3.6839E-06 89.403 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 3 2 1 2 1 0.97212 0.91333 12.133 10 Median 0.78349 0.75651 NaN 1 0 Median 1.1518 0.99806 16.376 3 0 Median 0.86242 0.932 3.6199 2 0 Median 1.0674 0.9075 NaN 1 0 Median 0.91395 0.92536 1.092 2 0 Median 1.0329 0.8865 NaN 1 0 Median 51392000 26310000 25081000 7188100 3685700 3502400 8817600 4084900 4732700 16989000 9089100 7899500 3472100 1606200 1866000 14114000 7487400 6626500 811320 356960 454360 15262 2917 15892 78737;78738;78739;78740;78741;78742;78743;78744;78745;78746 79983;79984;79985;79986;79987;79988;79989;79990;79991 79984 9 ILASLVTQFNSGLK EKAVACSGAAQVRIKILASLVTQFNSGLKA KILASLVTQFNSGLKAEVLSFILEDVRARL K I L L K A 1 0 1 0 0 1 0 1 0 1 3 1 0 1 0 2 1 0 0 1 0 0 14 0 1489.8504 Q92797;A0A087WUE9;M0R3C7 Q92797 588 601 SYMPK Symplekin yes no 2 0.0016794 47.261 By matching By MS/MS By matching 1 1 1 1.2617 1.0998 11.222 3 Median NaN NaN NaN 0 0 Median 1.2818 1.1714 NaN 1 0 Median 0.87838 0.94188 NaN 1 0 Median 1.2617 1.0998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2055800 933110 1122700 0 0 0 294490 117040 177450 1604400 741940 862510 156830 74123 82703 0 0 0 0 0 0 15263 3558 15893 78747;78748;78749 79992;79993 79992 2 ILASTQFEPTAAR GFYKSTYRTKEGELRILASTQFEPTAARMA LRILASTQFEPTAARMAFPCFDEPAFKASF R I L A R M 3 1 0 0 0 1 1 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 13 0 1403.7409 Q9NZ08 Q9NZ08 176 188 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes yes 2 2.0336E-06 159.83 By MS/MS 2 0.47989 0.46512 109.83 2 Median 0.47989 0.46512 109.83 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25430000 18113000 7316200 25430000 18113000 7316200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15264 4182 15894 78750;78751 79994;79995 79995 2 ILATMNPGGDFGK KDSEIELLTAGKKFRILATMNPGGDFGKKE FRILATMNPGGDFGKKELSPALRNRFTEIW R I L G K K 1 0 1 1 0 0 0 3 0 1 1 1 1 1 1 0 1 0 0 0 0 0 13 0 1319.6544 Q9NU22 Q9NU22 1517 1529 MDN1 Midasin yes yes 2 0.00054412 81.865 By MS/MS 1 1.1766 1.2564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1766 1.2564 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16964000 6769200 10195000 0 0 0 0 0 0 16964000 6769200 10195000 0 0 0 0 0 0 0 0 0 15265 4112 15895 78752 79996 79996 1 ILATMNPGGDFGKK KDSEIELLTAGKKFRILATMNPGGDFGKKE RILATMNPGGDFGKKELSPALRNRFTEIWC R I L K K E 1 0 1 1 0 0 0 3 0 1 1 2 1 1 1 0 1 0 0 0 0 0 14 1 1447.7493 Q9NU22 Q9NU22 1517 1530 MDN1 Midasin yes yes 2;3 1.0981E-05 124.67 By MS/MS 3 1.009 1.1424 11.069 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.009 1.1424 11.069 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38966000 18315000 20651000 0 0 0 0 0 0 38966000 18315000 20651000 0 0 0 0 0 0 0 0 0 15266 4112 15896 78753;78754;78755 79997;79998;79999;80000 79999 4 ILATNSELVGTLTR VASMAGVNLSEESARILATNSELVGTLTRS RILATNSELVGTLTRSCKDETFLLQAPLQR R I L T R S 1 1 1 0 0 0 1 1 0 1 3 0 0 0 0 1 3 0 0 1 0 0 14 0 1486.8355 O00268;A0A0G2JRY5;V9GY14 O00268 852 865 TAF4 Transcription initiation factor TFIID subunit 4 yes no 2 6.8787E-07 148.28 By MS/MS 1 1.003 1.1031 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.003 1.1031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8058100 3866800 4191300 0 0 0 0 0 0 8058100 3866800 4191300 0 0 0 0 0 0 0 0 0 15267 1453 15897 78756 80001;80002 80002 2 ILATPPQEDAPSVDIANIR QIIQEIYSQIQSKKKILATPPQEDAPSVDI PPQEDAPSVDIANIRMPSLPSYKVGDKIAT K I L I R M 3 1 1 2 0 1 1 0 0 3 1 0 0 0 3 1 1 0 0 1 0 0 19 0 2019.0637 P29401;A0A0B4J1R6;E9PFF2 P29401 284 302 TKT Transketolase yes no 2;3 1.5766E-21 168.61 By MS/MS By MS/MS By MS/MS By MS/MS 8 2 4 2 0.62371 0.58979 18.837 16 Median 0.58808 0.57365 20.785 8 1 Median 0.68614 0.59332 2.1018 2 0 Median 0.61913 0.64275 26.701 4 1 Median 0.7284 0.61275 4.1427 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 288780000 175100000 113680000 229950000 139800000 90153000 29441000 17011000 12429000 27441000 17223000 10219000 1945900 1069300 876660 0 0 0 0 0 0 15268 2173 15898 78757;78758;78759;78760;78761;78762;78763;78764;78765;78766;78767;78768;78769;78770;78771;78772 80003;80004;80005;80006;80007;80008;80009;80010;80011;80012;80013;80014;80015;80016;80017;80018;80019;80020;80021;80022;80023;80024;80025;80026;80027 80010 25 ILATTPSAVFR GGGVTNLLWSPDGSKILATTPSAVFRVWEA DGSKILATTPSAVFRVWEAQMWTCERWPTL K I L F R V 2 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 2 0 0 1 0 0 11 0 1174.671 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 302 312 AAAS Aladin yes no 2 0.00019545 96.331 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.0127 0.94278 21.794 6 Median NaN NaN NaN 0 0 Median 1.2176 1.062 NaN 1 0 Median 0.91282 0.907 NaN 1 0 Median 0.92374 0.78541 41.055 2 0 Median 0.92979 0.9364 NaN 1 0 Median 1.1029 0.94919 NaN 1 0 Median 29858000 15046000 14812000 0 0 0 913270 436430 476840 21098000 10671000 10428000 3537400 1651400 1886100 2317900 1263100 1054800 1990900 1024600 966230 15269 4082 15899 78773;78774;78775;78776;78777;78778 80028;80029;80030;80031;80032;80033 80030 6 ILAVNGQDVR PRGLAARSGLRVGDRILAVNGQDVRDATHQ RVGDRILAVNGQDVRDATHQEAVSALLRPC R I L V R D 1 1 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1083.6037 A0A0G2JNZ2;A0A0G2JPP5;Q14160;A0A0G2JMS7;H0YCG0 A0A0G2JNZ2 1058 1067 SCRIB Protein scribble homolog yes no 2 0.00038325 79.906 By MS/MS By MS/MS 1 2 1.1862 1.1055 6.4782 3 Median 1.1356 1.1169 NaN 1 0 Median 1.2535 1.0481 7.5471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13583000 5340000 8243000 3069700 1168600 1901000 10513000 4171300 6341900 0 0 0 0 0 0 0 0 0 0 0 0 15270 283 15900 78779;78780;78781 80034;80035 80034 2 ILCLFRPQSGR GVGYELGRAVAFNKRILCLFRPQSGRVLSA FNKRILCLFRPQSGRVLSAMIRGAADGSRF R I L G R V 0 2 0 0 1 1 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 11 1 1345.7289 H0Y8X4;O43598 H0Y8X4 184 194 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 3 0.007109 49.5 By MS/MS 1 1.2688 1.1607 NaN 1 Median NaN NaN NaN 0 0 Median 1.2688 1.1607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1396400 627980 768390 0 0 0 1396400 627980 768390 0 0 0 0 0 0 0 0 0 0 0 0 15271 1164 15901 78782 80036 80036 1 ILDAAGANLK AHGLLCLLSDHVDKRILDAAGANLKVISTM HVDKRILDAAGANLKVISTMSVGIDHLALD R I L L K V 3 0 1 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 984.5604 Q9UBQ7;U3KQ56 Q9UBQ7 67 76 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 2 0.00038325 105.14 By MS/MS By MS/MS By MS/MS 1 1 1 1.0186 0.92416 25.112 3 Median 1.0186 0.92416 NaN 1 0 Median 1.4819 1.2418 NaN 1 0 Median 0.78577 0.75362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63187000 29840000 33346000 32278000 16962000 15316000 28610000 11597000 17012000 2299500 1281200 1018300 0 0 0 0 0 0 0 0 0 15272 4243 15902 78783;78784;78785 80037;80038;80039;80040;80041 80037 5 ILDAVVAQEPLHR EGPLCDELIRNVKFKILDAVVAQEPLHRGG FKILDAVVAQEPLHRGGGQIIPTARRVVYS K I L H R G 2 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1459.8147 Q15029;K7EP67;K7EJ74 Q15029 791 803 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2;3 3.8796E-22 196.27 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 7 2 10 7 0.99884 0.90478 38.357 29 Median 1.2648 1.2362 33.558 2 0 Median 1.1091 0.96115 NaN 1 0 Median 0.86994 0.91843 73.03 7 0 Median 1.147 0.97149 9.7081 2 1 Median 0.87495 0.88837 19.979 10 0 Median 1.0486 0.86685 14.171 7 0 Median 309200000 157710000 151490000 28845000 13196000 15649000 3086300 1224500 1861800 107560000 56136000 51422000 26514000 12688000 13826000 129650000 68320000 61334000 13543000 6148900 7394600 15273 2917 15903 78786;78787;78788;78789;78790;78791;78792;78793;78794;78795;78796;78797;78798;78799;78800;78801;78802;78803;78804;78805;78806;78807;78808;78809;78810;78811;78812;78813;78814 80042;80043;80044;80045;80046;80047;80048;80049;80050;80051;80052;80053;80054;80055;80056;80057;80058;80059;80060;80061;80062;80063;80064;80065;80066;80067;80068 80048 27 ILDDDTIITTLENLK LEKSLLQALNEVKGRILDDDTIITTLENLK ILDDDTIITTLENLKREAAEVTRKVEETDI R I L L K R 0 0 1 3 0 0 1 0 0 3 3 1 0 0 0 0 3 0 0 0 0 0 15 0 1715.9193 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3760 3774 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00021048 73.781 By matching By MS/MS 3 2 0.9085 0.90231 15.348 5 Median 0.84358 0.82342 14.977 3 0 Median 1.1044 0.96878 4.2017 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29237000 15518000 13719000 21419000 12030000 9389600 7817700 3487900 4329800 0 0 0 0 0 0 0 0 0 0 0 0 15274 2865 15904 78815;78816;78817;78818;78819 80069 80069 1 ILDDDTIITTLENLKR LEKSLLQALNEVKGRILDDDTIITTLENLK LDDDTIITTLENLKREAAEVTRKVEETDIV R I L K R E 0 1 1 3 0 0 1 0 0 3 3 1 0 0 0 0 3 0 0 0 0 0 16 1 1872.0204 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3760 3775 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 4.2407E-07 88.507 By MS/MS By MS/MS By matching 4 3 3 1.0424 1.1051 10.363 9 Median 1.0669 1.1087 9.676 4 0 Median 1.064 0.99879 14.308 2 0 Median 0.97487 1.1216 7.2545 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66572000 32881000 33691000 30370000 14551000 15818000 34756000 17644000 17112000 1446400 685100 761270 0 0 0 0 0 0 0 0 0 15275 2865 15905 78820;78821;78822;78823;78824;78825;78826;78827;78828;78829 80070;80071;80072;80073;80074;80075;80076;80077 80076 8 ILDDICVAK KLPETNLFETEETRKILDDICVAKAVECPP TEETRKILDDICVAKAVECPPPRTTARLLD K I L A K A 1 0 0 2 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1045.5478 Q15046 Q15046 422 430 KARS Lysine--tRNA ligase yes yes 2 0.04318 32.841 By MS/MS 1 1.0559 0.90927 NaN 1 Median NaN NaN NaN 0 0 Median 1.0559 0.90927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2849100 1326600 1522400 0 0 0 2849100 1326600 1522400 0 0 0 0 0 0 0 0 0 0 0 0 15276 2919 15906 78830 80078 80078 1 ILDDSDSNLSVVK ECKNYLRKTRGYLIKILDDSDSNLSVVKKL IKILDDSDSNLSVVKKLPVPLESVKEMLKS K I L V K K 0 0 1 3 0 0 0 0 0 1 2 1 0 0 0 3 0 0 0 2 0 0 13 0 1403.7144 J3KNE0;A6NKT7;Q7Z3J3 J3KNE0 722 734 RGPD3;RGPD4 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 yes no 2 5.735E-07 140.3 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 3 2 1.1439 1.194 38.577 16 Median 0.25684 0.28535 NaN 1 0 Median 1.2809 1.1357 50.339 2 1 Median 0.99842 1.0765 7.0623 4 0 Median 1.3857 1.2236 11.784 4 0 Median 1.1893 1.2382 3.6586 3 0 Plateau 1.4648 1.2328 4.8811 2 0 Median 297630000 145070000 152570000 3339100 2663800 675280 14279000 7148800 7130300 226750000 112070000 114690000 30242000 13307000 16934000 19751000 8462400 11289000 3269200 1415300 1854000 15277 525 15907 78831;78832;78833;78834;78835;78836;78837;78838;78839;78840;78841;78842;78843;78844;78845;78846 80079;80080;80081;80082;80083;80084;80085;80086;80087;80088;80089;80090;80091;80092;80093;80094;80095;80096;80097;80098 80088 20 ILDDSDSNLSVVKK ECKNYLRKTRGYLIKILDDSDSNLSVVKKL KILDDSDSNLSVVKKLPVPLESVKEMLKSV K I L K K L 0 0 1 3 0 0 0 0 0 1 2 2 0 0 0 3 0 0 0 2 0 0 14 1 1531.8094 J3KNE0;A6NKT7;Q7Z3J3 J3KNE0 722 735 RGPD3;RGPD4 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 yes no 3 0.023515 19.754 By MS/MS 1 1.0918 1.2401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0918 1.2401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4331900 1740200 2591700 0 0 0 0 0 0 4331900 1740200 2591700 0 0 0 0 0 0 0 0 0 15278 525 15908 78847 80099 80099 1 ILDDTEDTVVSQR KRKNSQPGVKVADRKILDDTEDTVVSQRKK RKILDDTEDTVVSQRKKIQINQEEERLKNE K I L Q R K 0 1 0 3 0 1 1 0 0 1 1 0 0 0 0 1 2 0 0 2 0 0 13 0 1489.726 P42696;A2A2V2;Q5TCT4 P42696 157 169 RBM34 RNA-binding protein 34 yes no 2 1.5038E-06 162.36 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1723 1.0851 10.989 4 Median NaN NaN NaN 0 0 Median 1.358 1.1646 NaN 1 0 Median 0.77914 0.90396 NaN 1 0 Median 1.29 1.1097 NaN 1 0 Median 1.0653 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median 25839000 12529000 13310000 0 0 0 2642400 1158000 1484400 4356100 2494100 1861900 1976900 874840 1102000 16864000 8002000 8861700 0 0 0 15279 2314 15909 78848;78849;78850;78851 80100;80101 80100 2 ILDEIEEHNIK ADTLTLKERERLKKRILDEIEEHNIKIYHL LKKRILDEIEEHNIKIYHLPDAESDEDEDF R I L I K I 0 0 1 1 0 0 3 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0 11 0 1351.6983 Q15019;B5MCX3;H7C2Y0;C9J2Q4 Q15019 199 209 SEPT2 Septin-2 yes no 2;3 8.9653E-07 166.33 By MS/MS By MS/MS By MS/MS By matching 2 5 5 3 1.1833 1.0322 47.732 15 Median 3.7054 3.4121 47.839 2 2 Median NaN NaN NaN 0 0 Median 0.98541 0.943 19.662 5 1 Median 1.2529 1.0673 4.2013 5 1 Median NaN NaN NaN 0 0 Median 1.2307 1.034 2.8481 3 0 Median 872860000 386210000 486650000 63197000 11848000 51349000 0 0 0 579710000 276330000 303380000 226750000 96623000 130120000 0 0 0 3207500 1411600 1795800 15280 2914 15910 78852;78853;78854;78855;78856;78857;78858;78859;78860;78861;78862;78863;78864;78865;78866 80102;80103;80104;80105;80106;80107;80108;80109;80110;80111;80112;80113;80114;80115;80116;80117;80118;80119;80120;80121 80119 20 ILDELVK TCCVTVTEPDLKNNRILDELVKSLNFARNH EPDLKNNRILDELVKSLNFARNHLLQFALE R I L V K S 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 Q9NS91;F8WE49;C9J0Q4 Q9NS91 77 83 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 2 0.021555 58.981 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.1478 1.1313 14.751 5 Median 1.3132 1.2482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.115 1.1387 NaN 1 0 Median 1.1478 0.98683 NaN 1 0 Median 0.8918 0.85563 NaN 1 0 Median 1.3458 1.1313 NaN 1 0 Median 20017000 8625100 11391000 7206300 3001500 4204800 0 0 0 9462700 4049300 5413400 790540 313740 476800 1753800 903810 850020 803320 356820 446500 15281 4099 15911 78867;78868;78869;78870;78871 80122 80122 1 ILDETQEAVEYQR LNKMHQVMSIEEVERILDETQEAVEYQRQI ERILDETQEAVEYQRQIDELLAGSFTQEDE R I L Q R Q 1 1 0 1 0 2 3 0 0 1 1 0 0 0 0 0 1 0 1 1 0 0 13 0 1592.7682 Q96FZ7;I3L3E4;I3L4G8;I3L4A1 Q96FZ7 126 138 CHMP6 Charged multivesicular body protein 6 yes no 2 6.7811E-07 153.12 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.0891 1.032 32.341 6 Median 1.0269 0.96578 16.808 2 0 Median 1.3044 1.103 NaN 1 0 Median 1.0227 0.97914 NaN 1 0 Median 0.74602 0.61739 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0323 1.6484 NaN 1 0 Median 23331000 10170000 13160000 9929900 4089600 5840300 6193800 2600400 3593300 4330000 2063200 2266800 1858000 1093800 764120 0 0 0 1018900 323130 695800 15282 3651 15912 78872;78873;78874;78875;78876;78877 80123;80124;80125;80126;80127;80128 80125 6 ILDHLTMIDNK LKTLLHTLCKLKGPKILDHLTMIDNKNESE KGPKILDHLTMIDNKNESELEAHLCRMMKH K I L N K N 0 0 1 2 0 0 0 0 1 2 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1311.6857 Q14008;H0YDX5 Q14008 1775 1785 CKAP5 Cytoskeleton-associated protein 5 yes no 3 0.038849 18.81 By MS/MS 1 1.0447 1.1638 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0447 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4711600 2221100 2490500 0 0 0 0 0 0 4711600 2221100 2490500 0 0 0 0 0 0 0 0 0 15283 2850 15913 78878 80129 80129 1 ILDIDIPMSVGIIDPR HQQLEGWRWNRPGDRILDIDIPMSVGIIDP LDIDIPMSVGIIDPRANPTQLNTVEFLWDP R I L P R A 0 1 0 3 0 0 0 1 0 5 1 0 1 0 2 1 0 0 0 1 0 0 16 0 1765.9648 Q12800;F8VX55;F8VWL0 Q12800 149 164 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00022356 56.404 By MS/MS 1 0.66083 0.6695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66083 0.6695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8127100 5062000 3065100 0 0 0 0 0 0 8127100 5062000 3065100 0 0 0 0 0 0 0 0 0 15284 2760 15914 78879 80130;80131 80130 1479 2 ILDIDNVDLAMGK PIQQAKALGLQFHSRILDIDNVDLAMGKMM SRILDIDNVDLAMGKMMEQGPVLIITFQAQ R I L G K M 1 0 1 3 0 0 0 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 13 0 1415.733 O43615 O43615 369 381 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 5.9223E-05 86.624 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1438 1.0313 21.561 5 Median 0.97119 0.92717 NaN 1 0 Median 1.1438 0.97419 NaN 1 0 Median 1.3207 1.3994 NaN 1 0 Median 1.7473 1.4753 NaN 1 0 Median 1.0418 1.0313 NaN 1 0 Median NaN NaN NaN 0 0 Median 39636000 18134000 21501000 1923200 710230 1213000 28868000 13656000 15212000 4881000 2103600 2777400 1605000 717800 887210 2358600 946620 1412000 0 0 0 15285 1577 15915 78880;78881;78882;78883;78884 80132;80133;80134;80135;80136;80137 80136 6 ILDILEYIHEHEYVHGDIK AKRFSRKTVLQLSLRILDILEYIHEHEYVH LEYIHEHEYVHGDIKASNLLLNYKNPDQVY R I L I K A 0 0 0 2 0 0 3 1 3 4 2 1 0 0 0 0 0 0 2 1 0 0 19 0 2335.1848 Q99986;H0YJ50 Q99986 161 179 VRK1 Serine/threonine-protein kinase VRK1 yes no 2;3;4;5 6.1555E-10 86.479 By MS/MS By MS/MS 4 2 1.0147 0.93502 51.649 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0358 0.98679 44.514 4 0 Median 0.74516 0.66518 56.611 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 319190000 160510000 158680000 0 0 0 0 0 0 314550000 158420000 156130000 4638800 2088500 2550300 0 0 0 0 0 0 15286 3775 15916 78885;78886;78887;78888;78889;78890 80138;80139;80140;80141;80142;80143;80144;80145;80146;80147;80148 80141 11 ILDILGETCK LQEIEEPSLEPENEKILDILGETCKSEPVK PENEKILDILGETCKSEPVKEESSELEQPF K I L C K S 0 0 0 1 1 0 1 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1160.6111 Q15424;Q14151 Q15424 217 226 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 2 0.005028 66.621 By MS/MS 2 0.82766 0.81637 33.293 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82766 0.81637 33.293 2 1 Median NaN NaN NaN 0 0 Median 19724000 10217000 9506700 0 0 0 0 0 0 0 0 0 0 0 0 19724000 10217000 9506700 0 0 0 15287 2951;2859 15917 78891;78892 80149;80150;80151 80151 3 ILDKLEDYQQK GENSANSHNIALSQKILDKLEDYQQKVDKA LSQKILDKLEDYQQKVDKATRDLLYRRTL_ K I L Q K V 0 0 0 2 0 2 1 0 0 1 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1391.7296 Q12769 Q12769 1412 1422 NUP160 Nuclear pore complex protein Nup160 yes yes 2;3 8.3909E-06 163.16 By matching By MS/MS By MS/MS 1 3 2 0.95577 1.3209 46.524 6 Linear NaN NaN NaN 0 0 Median 0.36075 0.34261 NaN 1 0 Median 1.0098 1.1771 29.419 3 0 Plateau 0.99495 0.94777 4.8122 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73839000 37950000 35889000 0 0 0 2354200 1397200 956990 49418000 24973000 24445000 22067000 11580000 10487000 0 0 0 0 0 0 15288 2756 15918 78893;78894;78895;78896;78897;78898 80152;80153;80154;80155;80156;80157;80158;80159 80158 8 ILDKLEDYQQKVDK GENSANSHNIALSQKILDKLEDYQQKVDKA KILDKLEDYQQKVDKATRDLLYRRTL____ K I L D K A 0 0 0 3 0 2 1 0 0 1 2 3 0 0 0 0 0 0 1 1 0 0 14 2 1733.92 Q12769 Q12769 1412 1425 NUP160 Nuclear pore complex protein Nup160 yes yes 2;3;4 4.0121E-06 128.85 By MS/MS 3 0.71467 0.85878 20.393 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71467 0.85878 20.393 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54186000 27839000 26347000 0 0 0 0 0 0 54186000 27839000 26347000 0 0 0 0 0 0 0 0 0 15289 2756 15919 78899;78900;78901 80160;80161;80162;80163;80164;80165 80160 6 ILDLGFEK HFSRLRWLVFDEADRILDLGFEKDITVILN VFDEADRILDLGFEKDITVILNAVNAECQK R I L E K D 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 933.51713 F8WAJ0;Q9H8H2 F8WAJ0 288 295 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 2 0.049701 34.808 By matching By MS/MS 1 1 1.171 1.1477 9.5195 2 Median NaN NaN NaN 0 0 Median 1.1886 1.073 NaN 1 0 Median 1.1537 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2007900 1030300 977630 0 0 0 325200 150100 175090 1682700 880200 802530 0 0 0 0 0 0 0 0 0 15290 1092 15920 78902;78903 80166 80166 1 ILDLGITGPEGHVLSRPEEVEAEAVNR VHAENGDIIAEEQQRILDLGITGPEGHVLS VLSRPEEVEAEAVNRAITIANQTNCPLYIT R I L N R A 2 2 1 1 0 0 5 3 1 2 3 0 0 0 2 1 1 0 0 3 0 0 27 1 2899.5039 Q16555;A0A1C7CYX9 Q16555 212 238 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 4 0.062203 7.643 By MS/MS 1 0.40801 0.44067 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40801 0.44067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21861000 15518000 6342900 0 0 0 0 0 0 21861000 15518000 6342900 0 0 0 0 0 0 0 0 0 15291 328 15921 78904 80167 80167 1 ILDNTSEPQPGEAR GRLLKPREMEQQMQRILDNTSEPQPGEARL RILDNTSEPQPGEARLAALTAGDRVPWARC R I L A R L 1 1 1 1 0 1 2 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 14 0 1525.7372 P50416 P50416 366 379 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes yes 2 2.2446E-07 113.63 By matching By MS/MS 1 2 0.54752 0.45661 16.018 3 Plateau 0.5404 0.54731 NaN 1 0 Median 0.49743 0.42613 9.7726 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9994000 6437800 3556200 2238900 1486400 752570 7755000 4951400 2803600 0 0 0 0 0 0 0 0 0 0 0 0 15292 2413 15922 78905;78906;78907 80168;80169 80168 2 ILDPEGLALGAVIASSK DGFEIVPIEDPAKHRILDPEGLALGAVIAS DPEGLALGAVIASSKKAKRDLIDNSFNRYT R I L S K K 3 0 0 1 0 0 1 2 0 2 3 1 0 0 1 2 0 0 0 1 0 0 17 0 1652.9349 Q8IY81 Q8IY81 662 678 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.00044406 43.084 By matching By matching By matching By MS/MS By matching 1 1 1 2 3 0.97319 0.89409 12.268 8 Median 1.1379 1.152 NaN 1 0 Median 0.97075 0.88549 NaN 1 0 Median 0.72924 0.76372 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8764 0.90151 7.872 2 0 Median 1.1698 0.98029 7.7181 3 0 Plateau 13951000 7023600 6927200 397250 180670 216570 211770 105950 105820 457100 253450 203640 0 0 0 10807000 5538700 5268100 2078000 944860 1133100 15293 3338 15923 78908;78909;78910;78911;78912;78913;78914;78915 80170 80170 1 ILDQGEDFPASEMTR TQKKWAEQYLKIMGKILDQGEDFPASEMTR ILDQGEDFPASEMTRIARLIEKNKMSDGKK K I L T R I 1 1 0 2 0 1 2 1 0 1 1 0 1 1 1 1 1 0 0 0 0 0 15 0 1707.7774 P30040;F8VY02 P30040 209 223 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 4.268E-19 131.37 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.9891 0.84666 13.933 5 Median 0.79539 0.75338 7.4319 2 2 Median 1.1968 1.0133 NaN 1 0 Median 0.9891 0.95046 NaN 1 0 Median 1.0335 0.84666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28293000 15135000 13158000 16984000 10109000 6874900 3164900 1341700 1823200 7793200 3508300 4285000 351410 176290 175120 0 0 0 0 0 0 15294 2178 15924 78916;78917;78918;78919;78920 80171;80172;80173;80174;80175;80176;80177;80178;80179;80180;80181;80182;80183;80184;80185 80171 15 ILDSAEFIK SFKAPSYLEISSMRRILDSAEFIKFTVIRP ISSMRRILDSAEFIKFTVIRPFPGLVINNQ R I L I K F 1 0 0 1 0 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1034.5648 P78347;A0A494C1K3 P78347 929 937 GTF2I General transcription factor II-I yes no 2 0.0074886 51.346 By MS/MS By matching By matching By matching 3 2 1 2 1.2834 1.1029 21.506 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74955 0.79759 36.28 3 0 Median 1.366 1.159 9.2435 2 0 Median 1.101 1.1372 NaN 1 0 Median 1.3122 1.0987 2.7637 2 0 Median 50994000 26470000 24524000 0 0 0 0 0 0 43695000 23154000 20541000 3083000 1360100 1722900 2589600 1177300 1412300 1626200 778040 848120 15295 2642 15925 78921;78922;78923;78924;78925;78926;78927;78928 80186;80187;80188;80189;80190 80186 5 ILDSFAAAPVPTTTLVLK SEQSVAVMPEPSMTKILDSFAAAPVPTTTL SFAAAPVPTTTLVLKSSEPVVTMSVEYQMK K I L L K S 3 0 0 1 0 0 0 0 0 1 3 1 0 1 2 1 3 0 0 2 0 0 18 0 1856.0659 P18583 P18583 241 258 SON Protein SON yes yes 2 0.044468 21.251 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.71614 0.74829 13.133 6 Median 0.91541 0.90896 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61649 0.67846 14.661 2 0 Median NaN NaN NaN 0 0 Median 0.71614 0.73392 1.936 2 0 Median 0.94485 0.81305 NaN 1 0 Median 5267500 2927900 2339500 678270 370930 307340 0 0 0 1869200 1091500 777660 0 0 0 2123700 1160200 963500 596360 305340 291030 15296 2058 15926 78929;78930;78931;78932;78933;78934 80191;80192 80191 2 ILDSVGIEADDDRLNK ALGGNSSPSAKDIKKILDSVGIEADDDRLN LDSVGIEADDDRLNKVISELNGKNIEDVIA K I L N K V 1 1 1 4 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 16 1 1771.8952 P05387 P05387 26 41 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3 4.3667E-10 155.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 2 3 1.2011 1.174 26.543 13 Median 1.1955 1.1745 23.751 4 0 Median 1.4165 1.2506 12.502 2 0 Median 1.1939 1.2299 4.7657 2 0 Median NaN NaN NaN 0 0 Median 1.4286 1.6151 45.11 2 1 Median 1.1055 0.88256 7.2663 3 0 Median 299340000 130900000 168440000 69613000 31480000 38133000 25594000 11092000 14502000 156450000 68376000 88074000 0 0 0 38909000 16288000 22621000 8777000 3665100 5112000 15297 1864 15927 78935;78936;78937;78938;78939;78940;78941;78942;78943;78944;78945;78946;78947 80193;80194;80195;80196;80197;80198;80199;80200;80201;80202;80203;80204;80205;80206;80207;80208;80209;80210;80211 80201 19 ILDSVISELNGK ______________________________ IKKILDSVISELNGKNIEDVIAQGIGKLAS K I L G K N 0 0 1 1 0 0 1 1 0 2 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1286.7082 H0YDD8 H0YDD8 15 26 RPLP2 yes yes 2 0.00082389 60.436 By matching By matching By MS/MS 2 1 2 0.93637 0.85513 17.35 5 Median NaN NaN NaN 0 0 Median 0.79009 0.68971 17.061 2 0 Median 0.93637 0.96685 NaN 1 0 Median 0.95843 0.8634 1.3616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 412480000 209820000 202660000 0 0 0 42725000 23000000 19726000 21404000 9816700 11587000 348350000 177000000 171350000 0 0 0 0 0 0 15298 1175 15928 78948;78949;78950;78951;78952 80212 80212 1 ILDTGISVR RPQLAEQYYDMLIERILDTGISVRKRVIKI DMLIERILDTGISVRKRVIKILRDICIEQP R I L V R K 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 9 0 972.5604 A0A590UJS4;Q6KC79 A0A590UJS4 1857 1865 NIPBL Nipped-B-like protein yes no 2 0.00052905 103.56 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 0.9787 1.0533 19.027 6 Median NaN NaN NaN 0 0 Median 0.79088 0.68382 NaN 1 0 Median 0.9787 1.0533 0.67632 2 0 Median 1.2244 1.1037 4.4784 2 0 Median 0.85632 0.87791 NaN 1 1 Median NaN NaN NaN 0 0 Median 33345000 16214000 17130000 0 0 0 684780 293350 391430 17077000 8226800 8850600 1851300 819290 1032000 13731000 6875000 6856200 0 0 0 15299 488 15929 78953;78954;78955;78956;78957;78958 80213;80214;80215 80214 3 ILDTLGLLR KKKEAMIQCSLEACRILDTLGLLRQEAVSR SLEACRILDTLGLLRQEAVSRKRKAKNWED R I L L R Q 0 1 0 1 0 0 0 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 9 0 1012.6281 Q9BWU0;A0A087X0M4;A0A087WWF4 Q9BWU0 437 445 SLC4A1AP Kanadaptin yes no 2 0.02621 51.854 By MS/MS 1 1.3729 1.3744 NaN 1 Median 1.3729 1.3744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389700 554870 834790 1389700 554870 834790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15300 106 15930 78959 80216 80216 1 ILDVAQDLK WYMRGEQYDQAKLSRILDVAQDLKALSMLL QAKLSRILDVAQDLKALSMLLNGTPFAFVI R I L L K A 1 0 0 2 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1013.5757 A5YKK6 A5YKK6 560 568 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.05133 44.349 By MS/MS 1 0.6577 0.58395 NaN 1 Median NaN NaN NaN 0 0 Median 0.6577 0.58395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3526800 2110200 1416700 0 0 0 3526800 2110200 1416700 0 0 0 0 0 0 0 0 0 0 0 0 15301 503 15931 78960 80217 80217 1 ILDVASLEVLNEVNRR LKMRQGEEVFQSLSKILDVASLEVLNEVNR LDVASLEVLNEVNRRSLKKLASQADSTEQV K I L R R S 1 2 2 1 0 0 2 0 0 1 3 0 0 0 0 1 0 0 0 3 0 0 16 1 1839.0214 Q92616 Q92616 2635 2650 GCN1L1 Translational activator GCN1 yes yes 3 0.0015616 31.389 By MS/MS By MS/MS By matching 1 4 2 1.1593 1.1134 11.886 7 Median 1.0411 1.1134 NaN 1 0 Median 1.0906 1.0761 13.962 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3153 1.1499 14.312 2 0 Median 29129000 12627000 16501000 5564500 2489100 3075400 22672000 9732100 12940000 0 0 0 0 0 0 0 0 0 891670 405950 485720 15302 3544 15932 78961;78962;78963;78964;78965;78966;78967 80218;80219;80220;80221 80221 4 ILDVLEEIPK VCNTPHERLRILYTKILDVLEEIPKNAAYR ILYTKILDVLEEIPKNAAYRKYTEQITNEK K I L P K N 0 0 0 1 0 0 2 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1167.6751 F8WAS3;Q16718;C9IZN5;A0A087X1G1;H7BYD0 F8WAS3 31 40 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 2 0.00072097 103.55 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.4677 1.2221 28.568 4 Median 1.6548 1.5114 NaN 1 0 Median 1.4568 1.229 NaN 1 0 Median 0.79406 0.76825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4786 1.2152 NaN 1 0 Median 27854000 12347000 15508000 6280200 3241700 3038500 1019800 412840 606940 4953400 2705100 2248200 0 0 0 0 0 0 15601000 5987100 9613900 15303 1093 15933 78968;78969;78970;78971 80222;80223;80224 80223 3 ILDVMYSR STFDTQITKKMGYYKILDVMYSRLPKDDVH KKMGYYKILDVMYSRLPKDDVHAKESKINQ K I L S R L 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 1 0 0 8 0 995.511 P78527 P78527 1876 1883 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.1005E-06 137.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 3 1.1981 1.0833 18.526 15 Median 1.0954 1.0543 0.71824 2 1 Median 1.4554 1.1969 26.615 3 2 Median 0.96291 1.0059 1.9706 3 0 Median 1.5704 1.3689 7.1402 3 0 Median 1.0571 1.0833 NaN 1 0 Median 1.5832 1.3124 26.248 3 0 Plateau 337830000 156010000 181830000 18984000 7003100 11981000 67383000 28076000 39307000 209990000 103060000 106930000 21956000 8825700 13131000 14266000 7304400 6961800 5255100 1734400 3520700 15304 2647 15934;15935 78972;78973;78974;78975;78976;78977;78978;78979;78980;78981;78982;78983;78984;78985;78986;78987 80225;80226;80227;80228;80229;80230;80231;80232;80233;80234;80235;80236;80237;80238;80239;80240;80241;80242;80243;80244 80225 1319 20 ILDVNDNIPVVENK EVTDKPVKQAQVQIRILDVNDNIPVVENKV RILDVNDNIPVVENKVLEGMVEENQVNVEV R I L N K V 0 0 3 2 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 3 0 0 14 0 1580.841 Q14126 Q14126 262 275 DSG2 Desmoglein-2 yes yes 2 5.1659E-06 94.297 By matching By MS/MS By matching 1 2 1 0.6924 0.71607 32.429 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92009 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6924 0.71607 9.9394 2 0 Median 0.56694 0.47486 NaN 1 0 Median 25828000 14825000 11003000 0 0 0 0 0 0 6233300 3328300 2905000 0 0 0 19271000 11300000 7971700 323750 197250 126500 15305 2855 15936 78988;78989;78990;78991 80245;80246;80247;80248 80245 4 ILDWHVANTDK CAEAGVTLISPFVGRILDWHVANTDKKSYE FVGRILDWHVANTDKKSYEPLEDPGVKSVT R I L D K K 1 0 1 2 0 0 0 0 1 1 1 1 0 0 0 0 1 1 0 1 0 0 11 0 1310.6619 P37837;F2Z393 P37837 193 203 TALDO1 Transaldolase yes no 2;3 0.00055349 67.334 By MS/MS By MS/MS By matching 2 4 2 1.2307 1.0733 11.114 8 Median 1.147 1.0637 11.928 2 0 Median 1.3395 1.1247 5.9619 4 2 Median 0.94924 0.90979 5.392 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57221000 24372000 32849000 25730000 11026000 14704000 26385000 10972000 15413000 5106100 2374000 2732100 0 0 0 0 0 0 0 0 0 15306 2270 15937 78992;78993;78994;78995;78996;78997;78998;78999 80249;80250;80251;80252;80253;80254 80250 6 ILDWHVANTDKK CAEAGVTLISPFVGRILDWHVANTDKKSYE VGRILDWHVANTDKKSYEPLEDPGVKSVTK R I L K K S 1 0 1 2 0 0 0 0 1 1 1 2 0 0 0 0 1 1 0 1 0 0 12 1 1438.7569 P37837;F2Z393 P37837 193 204 TALDO1 Transaldolase yes no 2;3 4.3945E-06 125.74 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 1 1.1532 1.0656 6.6695 11 Median 1.0761 1.0628 4.9286 5 0 Median 1.2074 1.0906 4.2205 4 0 Median 1.0154 1.0578 NaN 1 0 Median 1.3985 1.2453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 331110000 152610000 178490000 190960000 87856000 103100000 109610000 50720000 58892000 25301000 12065000 13236000 5234900 1972700 3262300 0 0 0 0 0 0 15307 2270 15938 79000;79001;79002;79003;79004;79005;79006;79007;79008;79009;79010;79011 80255;80256;80257;80258;80259;80260;80261;80262;80263;80264;80265;80266;80267;80268;80269;80270;80271 80260 17 ILDWQPR RNYLLPAGYSLEEQRILDWQPRENPFQNLK GYSLEEQRILDWQPRENPFQNLKVLLVSDQ R I L P R E 0 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 7 0 926.4974 A6NNK5;Q12888 A6NNK5 1814 1820 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.017456 65.672 By MS/MS By MS/MS 1 3 1.2984 1.1197 20.886 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7395 0.80596 NaN 1 0 Median 1.3683 1.1517 10.023 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14009000 7412100 6597200 0 0 0 0 0 0 12613000 6860500 5752600 1396300 551660 844630 0 0 0 0 0 0 15308 530 15939 79012;79013;79014;79015 80272;80273;80274 80272 3 ILDYSCSQDR VPVDIMDLALSAHIKILDYSCSQDRDTQKI SAHIKILDYSCSQDRDTQKIQWIDRFIEEL K I L D R D 0 1 0 2 1 1 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 10 0 1255.5503 Q93008;O00507 Q93008 535 544 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.001158 68.016 By MS/MS 1 0.78514 0.65869 NaN 1 Median NaN NaN NaN 0 0 Median 0.78514 0.65869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5660500 3633700 2026800 0 0 0 5660500 3633700 2026800 0 0 0 0 0 0 0 0 0 0 0 0 15309 3573 15940 79016 80275 80275 1 ILDYSVHAER SETRLEEALENLCERILDYSVHAERKGSLR NLCERILDYSVHAERKGSLRYAKGQSQTMA R I L E R K 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1201.6091 A0A0J9YYJ0;Q8N129 A0A0J9YYJ0 58 67 CNPY4 Protein canopy homolog 4 yes no 3 0.0003736 66.056 By MS/MS By MS/MS 1 2 1.362 1.1585 26.369 3 Median 0.8943 0.85817 NaN 1 0 Median 1.5275 1.2968 15.948 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5418400 2504000 2914400 3073100 1529400 1543700 2345300 974570 1370800 0 0 0 0 0 0 0 0 0 0 0 0 15310 295 15941 79017;79018;79019 80276;80277;80278;80279 80276 4 ILEAELAVEPK VESTSSANEDMPVERILEAELAVEPKTETY PVERILEAELAVEPKTETYVEANMGLNPSS R I L P K T 2 0 0 0 0 0 3 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1210.6809 P19793;A0A087WZ88;P48443 P19793 235 245 RXRA;RXRG Retinoic acid receptor RXR-alpha;Retinoic acid receptor RXR-gamma yes no 2 0.0003569 71.349 By matching By MS/MS By MS/MS 1 2 2 1.1776 1.0542 21.384 5 Median 0.787 0.78205 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1911 1.1975 3.2408 2 1 Median 1.0606 0.91355 20.249 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30064000 14946000 15118000 6717900 3927600 2790400 0 0 0 20355000 9470100 10885000 2991000 1548400 1442600 0 0 0 0 0 0 15311 2070 15942 79020;79021;79022;79023;79024 80280;80281;80282;80283 80282 4 ILEAELAVEQK GEGAGGAPEEMPVDRILEAELAVEQKSDQG PVDRILEAELAVEQKSDQGVEGPGGTGGSG R I L Q K S 2 0 0 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1241.6867 P28702;A0A0G2JKR7 P28702 304 314 RXRB Retinoic acid receptor RXR-beta yes no 2 0.0002087 74.376 By MS/MS By matching 2 2 1.0536 0.96352 67.164 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7259 0.73933 39.204 2 0 Median 1.683 1.628 75.927 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14249000 6573200 7675800 0 0 0 0 0 0 12947000 6074200 6872800 1302000 499040 802940 0 0 0 0 0 0 15312 280 15943 79025;79026;79027;79028 80284 80284 1 ILEALASSEDVRK LGKYISIGSEAEKNKILEALASSEDVRKLY NKILEALASSEDVRKLYWLMKSSLNGDNFR K I L R K L 2 1 0 1 0 0 2 0 0 1 2 1 0 0 0 2 0 0 0 1 0 0 13 1 1429.7777 Q9UIQ6 Q9UIQ6 893 905 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2;3 9.4093E-07 104.79 By MS/MS By matching 3 2 1.6064 1.5197 33.015 5 Median 1.0314 1.0377 29.259 3 0 Median 1.9248 1.8245 25.853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25357000 11690000 13667000 21210000 10030000 11180000 4147400 1660100 2487200 0 0 0 0 0 0 0 0 0 0 0 0 15313 4292 15944 79029;79030;79031;79032;79033 80285;80286 80286 2 ILEDLDSLGVLICYMHNK REKYLTVQNTVRFGRILEDLDSLGVLICYM DLDSLGVLICYMHNKIHSAKMSPLSIVTAL R I L N K I 0 0 1 2 1 0 1 1 1 2 4 1 1 0 0 1 0 0 1 1 0 0 18 0 2132.0646 Q9Y305;C9J7L8 Q9Y305 116 133 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 3 9.9705E-13 93.51 By MS/MS 2 1.743 1.4804 0.23591 2 Median NaN NaN NaN 0 0 Median 1.743 1.4804 0.23591 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14122000 5200700 8921300 0 0 0 14122000 5200700 8921300 0 0 0 0 0 0 0 0 0 0 0 0 15314 4400 15945 79034;79035 80287;80288 80287 2 ILEDNSIPQVK AVRVTGADVPMPYAKILEDNSIPQVKDIIF PYAKILEDNSIPQVKDIIFAIKKTLNI___ K I L V K D 0 0 1 1 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1254.682 P11177 P11177 337 347 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 0.0039963 48.794 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 2 1 1 1.1704 1.0153 20.478 8 Median 0.88664 0.80201 NaN 1 0 Median 1.2151 1.0153 3.5101 2 0 Median 0.75515 0.72273 NaN 1 0 Median 1.1652 0.98184 26.048 2 0 Median 1.1597 1.1448 NaN 1 0 Median 1.396 1.2644 NaN 1 0 Median 125640000 61615000 64023000 93248000 46652000 46596000 23955000 10428000 13527000 4175800 2415300 1760500 2232200 1062800 1169500 1303300 736270 567020 723150 320440 402710 15315 1954 15946 79036;79037;79038;79039;79040;79041;79042;79043 80289;80290;80291;80292 80292 4 ILEDSGFDEQQEFR SQPALTSSRVCFPERILEDSGFDEQQEFRS RILEDSGFDEQQEFRSRCSSVTGVQRRVHE R I L F R S 0 1 0 2 0 2 3 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 14 0 1711.7689 O60343;A0A3B3IRT3 O60343 300 313 TBC1D4 TBC1 domain family member 4 yes no 2 4.4548E-08 110.86 By MS/MS By matching 1 1 1.4113 1.296 17.239 2 Median 1.1974 1.1473 NaN 1 0 Median 1.6635 1.4641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4969400 1740900 3228500 4727500 1635500 3092000 241890 105350 136540 0 0 0 0 0 0 0 0 0 0 0 0 15316 416 15947 79044;79045 80293 80293 1 ILEDTQFVDGYK TSAEASPAECCQHAKILEDTQFVDGYKQLG HAKILEDTQFVDGYKQLGFQETAYGEFLSR K I L Y K Q 0 0 0 2 0 1 1 1 0 1 1 1 0 1 0 0 1 0 1 1 0 0 12 0 1426.698 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;C9IZX9 Q14C86 76 87 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.002872 73.067 By MS/MS 1 1.869 1.8033 NaN 1 Median 1.869 1.8033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15104000 5287200 9817000 15104000 5287200 9817000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15317 2907 15948 79046 80294 80294 1 ILEDVVGVPEKK EDEHFEFHSRPCPTKILEDVVGVPEKKVLP PTKILEDVVGVPEKKVLPITVPKSPAFALK K I L K K V 0 0 0 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 0 3 0 0 12 1 1324.7602 Q9ULW0 Q9ULW0 466 477 TPX2 Targeting protein for Xklp2 yes yes 3 0.0040393 34.179 By MS/MS By matching By matching 2 1 2 0.91222 1.0293 37.244 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0937 1.2506 25.791 2 0 Median 0.59526 0.56539 NaN 1 0 Median 0.79529 0.86992 23.791 2 0 Median NaN NaN NaN 0 0 Median 18014000 9256900 8756900 0 0 0 0 0 0 8956600 4579100 4377500 4790900 2736200 2054800 4266400 1941600 2324700 0 0 0 15318 4330 15949 79047;79048;79049;79050;79051 80295 80295 1 ILEEFRK AIAYHLLEDYEMAAKILEEFRKTQQTSPDK EDYEMAAKILEEFRKTQQTSPDKVDYEYSE K I L R K T 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 1 933.52837 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 170 176 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.026264 62.714 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1905 1.2093 30.969 4 Median 1.1759 1.2187 NaN 1 0 Median 1.2053 1.2 NaN 1 1 Median 1.8433 2.0956 NaN 1 0 Median 1.0996 1.0351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12921000 5694200 7227000 1921500 876870 1044600 5097000 2266500 2830500 2264900 902690 1362200 3637700 1648100 1989600 0 0 0 0 0 0 15319 213 15950 79052;79053;79054;79055 80296;80297;80298 80298 3 ILEEPHPLMFQK SSQVNVEGQSRLNEKILEEPHPLMFQKLQD NEKILEEPHPLMFQKLQDQIFNLMKYDSYS K I L Q K L 0 0 0 0 0 1 2 0 1 1 2 1 1 1 2 0 0 0 0 0 0 0 12 0 1480.7748 O43665 O43665 118 129 RGS10 Regulator of G-protein signaling 10 yes yes 3 0.0075429 29.341 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 0.90622 0.77743 46.501 5 Median 1.2104 1.2338 79.868 2 0 Median 0.90622 0.77743 NaN 1 0 Median 0.79544 0.75768 NaN 1 0 Median 1.1063 1.0144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20637000 10906000 9731400 14685000 6926800 7758200 384400 209710 174690 3383100 2017000 1366200 261150 141020 120120 1923500 1611300 312250 0 0 0 15320 1582 15951 79056;79057;79058;79059;79060;79061 80299;80300;80301 80299 3 ILEFFGLK ILFIFIDSDHTDNQRILEFFGLKKEECPAV DHTDNQRILEFFGLKKEECPAVRLITLEEE R I L L K K 0 0 0 0 0 0 1 1 0 1 2 1 0 2 0 0 0 0 0 0 0 0 8 0 965.5586 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 301 308 P4HB Protein disulfide-isomerase yes no 2 0.026977 41.502 By MS/MS By matching By MS/MS By matching 5 2 1 1 1.2995 1.2506 13.406 9 Median 1.2881 1.2471 2.4742 5 0 Median 1.576 1.3244 3.3189 2 0 Median 1.2589 1.2506 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9261 1.8618 NaN 1 0 Median NaN NaN NaN 0 0 Median 54142000 23071000 31071000 34591000 15212000 19379000 12497000 4806500 7690800 6477500 2855900 3621600 0 0 0 576400 197190 379200 0 0 0 15321 1883 15952 79062;79063;79064;79065;79066;79067;79068;79069;79070 80302;80303 80302 2 ILEFFGLKK ILFIFIDSDHTDNQRILEFFGLKKEECPAV HTDNQRILEFFGLKKEECPAVRLITLEEEM R I L K K E 0 0 0 0 0 0 1 1 0 1 2 2 0 2 0 0 0 0 0 0 0 0 9 1 1093.6536 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 301 309 P4HB Protein disulfide-isomerase yes no 2 0.0027718 75.854 By MS/MS By matching By matching 2 1 1 1.273 1.2107 20.012 4 Median 1.2765 1.2107 7.8842 2 0 Median 0.93571 0.88303 NaN 1 0 Median 1.3282 1.4018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19481000 8460000 11021000 18291000 7936000 10355000 451580 222350 229230 738540 301650 436890 0 0 0 0 0 0 0 0 0 15322 1883 15953 79071;79072;79073;79074 80304;80305;80306;80307 80304 4 ILEFIAVSQLR VLEEDHYGMEDVKKRILEFIAVSQLRGSTQ VKKRILEFIAVSQLRGSTQGKILCFYGPPG R I L L R G 1 1 0 0 0 1 1 0 0 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1287.7551 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 387 397 LONP1 Lon protease homolog, mitochondrial yes no 2 0.00014526 84.17 By MS/MS By MS/MS 2 1 1.1989 1.072 25.181 3 Median 1.3643 1.3163 29.026 2 0 Median 1.1989 1.0223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6605000 2896400 3708600 3362000 1481800 1880200 3243100 1414600 1828400 0 0 0 0 0 0 0 0 0 0 0 0 15323 1370 15954 79075;79076;79077 80308;80309;80310;80311 80310 4 ILEFVGR FYEDMKENPKREIQKILEFVGRSLPEETVD NPKREIQKILEFVGRSLPEETVDFVVQHTS K I L G R S 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 832.48069 A0A0A6YYL2;P0DMN0;P0DMM9;P50225;H3BRY5;P50226;E9PKW4 P50225 207 213 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 2 0.0072812 89.903 By MS/MS By matching By MS/MS 2 4 1 1.2789 1.1009 18.975 7 Median 0.99278 0.9557 2.5768 2 0 Median 1.3773 1.1808 20.119 4 0 Median 1.2789 1.26 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67702000 32902000 34800000 56445000 28448000 27997000 8266500 3218200 5048300 2990700 1235200 1755500 0 0 0 0 0 0 0 0 0 15324 2410;208 15955 79078;79079;79080;79081;79082;79083;79084 80312;80313;80314;80315;80316;80317 80313 6 ILEGGPILPK KLQQYKFKARELDPRILEGGPILPKKPPVK ELDPRILEGGPILPKKPPVKPPTEPIGFDL R I L P K K 0 0 0 0 0 0 1 2 0 2 2 1 0 0 2 0 0 0 0 0 0 0 10 0 1035.6328 Q9ULW0 Q9ULW0 411 420 TPX2 Targeting protein for Xklp2 yes yes 2 0.002391 60.436 By MS/MS 1 0.81843 0.89079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81843 0.89079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13849000 7918000 5930800 0 0 0 0 0 0 13849000 7918000 5930800 0 0 0 0 0 0 0 0 0 15325 4330 15956 79085 80318 80318 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR GGGLTCASAPQGTLRILEGPQQSLSGSPLQ PASPPPQIPPGLRPRFCAFGGNPPVTGPRS R I L P R F 1 2 0 0 0 4 1 3 0 3 4 0 0 0 10 4 0 0 0 0 0 0 32 1 3323.8354 O15446 O15446 117 148 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 4 0.013999 15.046 By MS/MS 1 0.19286 0.21521 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19286 0.21521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1728200 1389900 338310 0 0 0 0 0 0 1728200 1389900 338310 0 0 0 0 0 0 0 0 0 15326 1548 15957 79086 80319 80319 1 ILEGSGATEFHCSAR VVMPGGGITDRNLQRILEGSGATEFHCSAR ILEGSGATEFHCSARSTRDSGMKFRNSSVA R I L A R S 2 1 0 0 1 0 2 2 1 1 1 0 0 1 0 2 1 0 0 0 0 0 15 0 1633.7519 Q9NTM9 Q9NTM9 212 226 CUTC Copper homeostasis protein cutC homolog yes yes 3 0.00032565 41.967 By MS/MS 1 1.5064 1.2801 NaN 1 Median NaN NaN NaN 0 0 Median 1.5064 1.2801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1616800 620840 995940 0 0 0 1616800 620840 995940 0 0 0 0 0 0 0 0 0 0 0 0 15327 4110 15958 79087 80320;80321 80321 2 ILEGSGVDAK GAPIGVHPSLAPLAKILEGSGVDAKVEPEV APLAKILEGSGVDAKVEPEVKDSLGVYCID K I L A K V 1 0 0 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 987.52368 Q9Y4C2;C9K0E7;C9J9F4;C9JD13 Q9Y4C2 104 113 TCAF1 TRPM8 channel-associated factor 1 yes no 2 0.0030055 74.173 By MS/MS By MS/MS By MS/MS 1 2 1 1.0623 1.0904 7.3535 3 Median 1.0623 1.0421 NaN 1 0 Median 1.409 1.2033 NaN 1 1 Median 1.0321 1.0904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11043000 4660200 6382600 4141600 1923200 2218400 5106700 1869300 3237400 1794500 867720 926800 0 0 0 0 0 0 0 0 0 15328 4443 15959 79088;79089;79090;79091 80322;80323;80324;80325;80326 80326 5 ILEGTETTK LEERVPINDVLAEDKILEGTETTKYVFTDI VLAEDKILEGTETTKYVFTDISYSIPHRER K I L T K Y 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 3 0 0 0 0 0 9 0 990.52334 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3 G5E9W7 106 114 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 0.0070414 52.716 By MS/MS 2 1.7597 1.5209 12.244 2 Median NaN NaN NaN 0 0 Median 1.7597 1.5209 12.244 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1045800 442710 603100 0 0 0 1045800 442710 603100 0 0 0 0 0 0 0 0 0 0 0 0 15329 1130 15960 79092;79093 80327;80328 80328 2 ILEHMPVSNQKPDTDEAEDPEK ADRMIDMGFEPDVQKILEHMPVSNQKPDTD SNQKPDTDEAEDPEKMLANFESGKHKYRQT K I L E K M 1 0 1 3 0 1 4 0 1 1 1 2 1 0 3 1 1 0 0 1 0 0 22 1 2521.1642 Q9BUQ8 Q9BUQ8 566 587 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3;4 2.7047E-07 52.451 By matching By MS/MS By MS/MS 1 2 3 0.83732 0.7976 16.419 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54084 0.61705 4.6128 2 1 Median 0.87189 0.83054 3.4949 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49126000 30281000 18845000 1963000 1136600 826350 0 0 0 32377000 20977000 11400000 14786000 8167900 6618100 0 0 0 0 0 0 15330 3842 15961 79094;79095;79096;79097;79098;79099 80329;80330;80331;80332;80333 80332 5 ILEIQPHHAR PVSLPFLGKLSSLQRILEIQPHHARLYRSQ SSLQRILEIQPHHARLYRSQVDPPTTTMQR R I L A R L 1 1 0 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1212.6727 Q8TEQ8 Q8TEQ8 110 119 PIGO GPI ethanolamine phosphate transferase 3 yes yes 3 0.017759 26.043 By MS/MS 1 0.70844 0.59689 NaN 1 Median NaN NaN NaN 0 0 Median 0.70844 0.59689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1636600 866060 770540 0 0 0 1636600 866060 770540 0 0 0 0 0 0 0 0 0 0 0 0 15331 3479 15962 79100 80334 80334 1 ILEIVGNIR ETLPRDVSRLAYTQRILEIVGNIRKQKEEI LAYTQRILEIVGNIRKQKEEITKILSDTKE R I L I R K 0 1 1 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1025.6233 O60826 O60826 497 505 CCDC22 Coiled-coil domain-containing protein 22 yes yes 2 0.003417 65.252 By matching By matching By MS/MS By matching 1 1 1 1 0.89317 0.89205 26.18 4 Median 0.88033 0.883 NaN 1 0 Median 0.9062 0.78648 NaN 1 0 Median 0.85149 0.9012 NaN 1 0 Median 1.6584 1.424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7977000 3721200 4255800 2456100 1010000 1446200 3541000 1820000 1721000 1738200 800540 937640 241680 90711 150970 0 0 0 0 0 0 15332 1632 15963 79101;79102;79103;79104 80335;80336 80336 2 ILELDQELIK NVKYELQQLEGSSDRILELDQELIKAEREL GSSDRILELDQELIKAERELSKAEKNSNVE R I L I K A 0 0 0 1 0 1 2 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1212.6966 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 474 483 RAD50 DNA repair protein RAD50 yes no 2 0.0012088 85.676 By MS/MS By matching By MS/MS By matching By matching 2 1 1 2 1 1.1394 1.0864 5.6206 7 Median 1.0621 1.0287 2.3018 2 2 Median 1.2813 1.0864 NaN 1 0 Median 1.0241 1.0908 NaN 1 0 Median 1.2948 1.1308 5.0262 2 0 Median NaN NaN NaN 0 0 Median 1.1394 0.98959 NaN 1 0 Median 56375000 26878000 29497000 18989000 8819600 10170000 7951100 3275700 4675400 26392000 13500000 12892000 2876000 1210300 1665700 0 0 0 166080 72112 93964 15333 3561 15964 79105;79106;79107;79108;79109;79110;79111 80337;80338;80339;80340 80340 4 ILELDQELIKAER NVKYELQQLEGSSDRILELDQELIKAEREL DRILELDQELIKAERELSKAEKNSNVETLK R I L E R E 1 1 0 1 0 1 3 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1568.8774 Q92878;A0A1W2PQ90;A0A494BZX5;A0A494C122;E7ESD9;A0A494C0Y7 Q92878 474 486 RAD50 DNA repair protein RAD50 yes no 3 0.00016529 71.607 By MS/MS By matching 1 1 0.99924 1.1331 20.074 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86778 0.98316 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1506 1.3059 NaN 1 0 Median NaN NaN NaN 0 0 Median 9482100 4860300 4621900 0 0 0 0 0 0 7200400 3635900 3564500 0 0 0 2281700 1224300 1057400 0 0 0 15334 3561 15965 79112;79113 80341;80342 80342 2 ILELDQFK NIYVLQELDNPGAKRILELDQFKGQQGQKR DNPGAKRILELDQFKGQQGQKRFQDMMGHG R I L F K G 0 0 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 P12956;B1AHC9 P12956 116 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0032009 100.45 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 6 3 3 1 2 1.1661 1.0438 23.654 17 Median 1.3182 1.2565 20.976 2 0 Median 1.2658 1.0707 31.25 6 0 Median 1.0175 0.97444 24.778 3 0 Median 1.2388 1.0818 24.509 3 0 Median 1.0542 1.0118 NaN 1 0 Median 1.156 0.97341 0.91489 2 0 Median 346510000 163010000 183500000 40674000 18201000 22473000 69703000 30169000 39534000 231930000 112590000 119340000 896210 410600 485610 1701400 901890 799500 1605000 735460 869520 15335 1985 15966 79114;79115;79116;79117;79118;79119;79120;79121;79122;79123;79124;79125;79126;79127;79128;79129;79130 80343;80344;80345;80346;80347;80348;80349 80348 7 ILELDQFKGQQGQK NIYVLQELDNPGAKRILELDQFKGQQGQKR RILELDQFKGQQGQKRFQDMMGHGSDYSLS R I L Q K R 0 0 0 1 0 4 1 2 0 1 2 2 0 1 0 0 0 0 0 0 0 0 14 1 1630.8679 P12956;B1AHC9 P12956 116 129 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 1.5621E-67 242.83 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 1 1.055 1.112 22.523 8 Median 1.1343 1.0575 25.674 3 0 Median NaN NaN NaN 0 0 Median 1.0043 1.112 0.029331 2 0 Median 1.3574 1.2534 NaN 1 0 Median 1.0263 1.1494 NaN 1 1 Median 0.7889 0.7166 NaN 1 0 Median 160630000 73086000 87546000 96740000 42032000 54709000 0 0 0 54142000 26211000 27931000 1047600 413710 633910 8310600 4243300 4067200 392370 186990 205370 15336 1985 15967 79131;79132;79133;79134;79135;79136;79137;79138 80350;80351;80352;80353;80354;80355;80356 80353 7 ILELDQFKGQQGQKR NIYVLQELDNPGAKRILELDQFKGQQGQKR ILELDQFKGQQGQKRFQDMMGHGSDYSLSE R I L K R F 0 1 0 1 0 4 1 2 0 1 2 2 0 1 0 0 0 0 0 0 0 0 15 2 1786.969 P12956;B1AHC9 P12956 116 130 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.015815 23.362 By MS/MS 1 1.089 1.1789 NaN 1 Median 1.089 1.1789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14910000 6429000 8480800 14910000 6429000 8480800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15337 1985 15968 79139 80357 80357 1 ILELEEENDRLR MKEKMRKFAKSKQQKILELEEENDRLRAEV QQKILELEEENDRLRAEVHPAGDTAKECME K I L L R A 0 2 1 1 0 0 4 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 12 1 1527.7893 Q14789 Q14789 1689 1700 GOLGB1 Golgin subfamily B member 1 yes yes 2 3.5358E-05 120.99 By MS/MS 1 1.0457 1.1364 NaN 1 Median 1.0457 1.1364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16185000 7630600 8554000 16185000 7630600 8554000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15338 2900 15969 79140 80358 80358 1 ILELLRPDPNTGK FSGTKQQEIVVSRGKILELLRPDPNTGKVH GKILELLRPDPNTGKVHTLLTVEVFGVIRS K I L G K V 0 1 1 1 0 0 1 1 0 1 3 1 0 0 2 0 1 0 0 0 0 0 13 1 1464.83 Q15393;I3L4G7 Q15393 37 49 SF3B3 Splicing factor 3B subunit 3 yes no 3 0.00023623 66.393 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 3 1 1 0.82436 0.77944 9.1105 10 Median 0.6332 0.65271 NaN 1 0 Median 0.86858 0.81558 3.2556 2 0 Median 0.68667 0.79057 6.9349 2 0 Median 0.88691 0.82612 9.1006 3 0 Median 0.66959 0.75973 NaN 1 0 Median 0.92193 0.73649 NaN 1 0 Median 53809000 28355000 25455000 5595500 3311300 2284300 14219000 7026200 7193000 24093000 13310000 10784000 3668900 1730400 1938400 1607000 1014300 592700 4625300 1962600 2662700 15339 2946 15970 79141;79142;79143;79144;79145;79146;79147;79148;79149;79150 80359;80360;80361;80362;80363;80364;80365 80359 7 ILELSGSSSEDSEK EPACLAEIEEDKARRILELSGSSSEDSEKV RILELSGSSSEDSEKVIAGLYQRAFQHLSE R I L E K V 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 14 0 1479.694 P78527 P78527 3359 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.4124E-44 184.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 6 6 2 5 0.96389 0.98747 22.628 23 Median 0.77823 0.7736 NaN 1 1 Median 1.3487 1.2084 21.157 5 4 Median 0.8606 0.93945 3.3358 6 6 Median 1.3797 1.4485 18.412 6 4 Linear 0.78613 0.8232 NaN 1 0 Median 1.1073 0.91601 32.8 4 1 Median 415470000 206640000 208830000 2257300 1238000 1019300 79849000 34866000 44983000 239530000 127300000 112230000 68649000 30040000 38610000 14930000 8258600 6671300 10249000 4933300 5315200 15340 2647 15971 79151;79152;79153;79154;79155;79156;79157;79158;79159;79160;79161;79162;79163;79164;79165;79166;79167;79168;79169;79170;79171;79172;79173;79174;79175 80366;80367;80368;80369;80370;80371;80372;80373;80374;80375;80376;80377;80378;80379;80380;80381;80382;80383;80384;80385;80386;80387;80388;80389;80390 80368 25 ILELSGSSSEDSEKVIAGLYQR EPACLAEIEEDKARRILELSGSSSEDSEKV SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE R I L Q R A 1 1 0 1 0 1 3 2 0 2 3 1 0 0 0 5 0 0 1 1 0 0 22 1 2380.2122 P78527 P78527 3359 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.0587E-23 117.74 By MS/MS By matching By matching 2 1 1 1.0238 1.0993 11.698 4 Median 1.1381 1.1728 4.2446 2 0 Median NaN NaN NaN 0 0 Median 0.79765 0.9209 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95918 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median 20433000 9455300 10977000 16780000 7844200 8936300 0 0 0 1328100 522280 805810 0 0 0 2324200 1088900 1235400 0 0 0 15341 2647 15972 79176;79177;79178;79179 80391;80392 80391 2 ILEMDKEENRR RSHRKADPDAAHRPRILEMDKEENRRSVLL HRPRILEMDKEENRRSVLLPTHRRRGSFSS R I L R R S 0 2 1 1 0 0 3 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 11 2 1431.714 Q6P6C2 Q6P6C2 339 349 ALKBH5 RNA demethylase ALKBH5 yes yes 3 0.0061638 35.511 By matching By MS/MS By matching 1 1 1 1.2384 1.4018 15.279 3 Plateau NaN NaN NaN 0 0 Median 0.98084 1.0867 NaN 1 0 Median 1.2534 1.4669 NaN 1 0 Median 1.1271 1.2008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4571900 2230200 2341700 0 0 0 315050 203440 111610 2846300 1345200 1501000 1410500 681530 729010 0 0 0 0 0 0 15342 3163 15973 79180;79181;79182 80393 80393 1 ILENEKDLEEAEEYKEAR DCQRRLEAAYLDLQRILENEKDLEEAEEYK NEKDLEEAEEYKEARLVLDSVKLEA_____ R I L A R L 2 1 1 1 0 0 7 0 0 1 2 2 0 0 0 0 0 0 1 0 0 0 18 2 2207.0594 E5RIW3;E5RJD8;O75347;E5RHG6 E5RIW3 57 74 TBCA Tubulin-specific chaperone A yes no 3;4 1.0829E-15 163.18 By MS/MS By MS/MS By MS/MS 4 2 2 1.0403 1.1067 6.1627 8 Median 1.0403 1.127 6.5401 4 0 Median 1.127 1.0215 2.8701 2 0 Median 0.99498 1.1229 4.0073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 215240000 98245000 116990000 63089000 30268000 32821000 93189000 40771000 52418000 58959000 27206000 31753000 0 0 0 0 0 0 0 0 0 15343 852 15974 79183;79184;79185;79186;79187;79188;79189;79190 80394;80395;80396;80397;80398;80399;80400;80401;80402;80403;80404;80405;80406 80406 13 ILEPGLNILIPVLDR QQEAWVVERMGRFHRILEPGLNILIPVLDR ILEPGLNILIPVLDRIRYVQSLKEIVINVP R I L D R I 0 1 1 1 0 0 1 1 0 3 4 0 0 0 2 0 0 0 0 1 0 0 15 0 1674.008 Q9UJZ1 Q9UJZ1 58 72 STOML2 Stomatin-like protein 2, mitochondrial yes yes 2 3.6242E-06 89.548 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 2 1.0955 0.99319 17.664 8 Median 0.81594 0.79029 0.52063 2 0 Median 1.0785 0.96642 NaN 1 0 Median 1.0239 1.0562 4.839 2 0 Median NaN NaN NaN 0 0 Median 1.3507 1.3577 NaN 1 0 Median 1.2222 1.0128 6.9121 2 0 Median 24235000 13015000 11220000 19791000 10861000 8930400 188740 88859 99876 3705100 1822800 1882200 0 0 0 170170 82731 87442 379970 159880 220080 15344 4304 15975 79191;79192;79193;79194;79195;79196;79197;79198 80407;80408;80409;80410;80411;80412 80409 6 ILEQEEEEEQAGKPGEPSK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEEQAGKPGEPSKKEEGRAGAGLGDGER R I L S K K 1 0 0 0 0 2 7 2 0 1 1 2 0 0 2 1 0 0 0 0 0 0 19 1 2126.0015 Q9BXP5 Q9BXP5 267 285 SRRT Serrate RNA effector molecule homolog yes yes 3 1.7127E-08 80.975 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 1 0.79128 0.7651 32.059 9 Median 0.6923 0.73024 NaN 1 0 Median 0.8992 0.85211 15.233 2 0 Median 0.63469 0.72346 57.169 3 0 Median 0.84479 0.81494 6.671 2 1 Median NaN NaN NaN 0 0 Median 0.67789 0.61219 NaN 1 0 Median 66019000 36793000 29226000 3323900 1796600 1527300 9238500 4338400 4900100 32036000 18895000 13140000 19694000 10811000 8882700 0 0 0 1726700 951490 775180 15345 3879 15976 79199;79200;79201;79202;79203;79204;79205;79206;79207 80413;80414;80415;80416;80417;80418;80419;80420;80421;80422;80423;80424 80420 12 ILEQEEEEEQAGKPGEPSKK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEQAGKPGEPSKKEEGRAGAGLGDGERK R I L K K E 1 0 0 0 0 2 7 2 0 1 1 3 0 0 2 1 0 0 0 0 0 0 20 2 2254.0965 Q9BXP5 Q9BXP5 267 286 SRRT Serrate RNA effector molecule homolog yes yes 3;4 2.5125E-07 54.288 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 5 4 2 1 0.74179 0.82973 19.003 17 Median 0.75312 0.78946 8.1428 2 0 Median 0.88635 0.86479 13.345 3 0 Median 0.64418 0.77408 22.891 5 0 Median 0.86127 0.89768 16.575 4 0 Median 0.60427 0.67367 8.9486 2 0 Median 0.83927 0.9119 NaN 1 0 Median 85840000 48741000 37099000 5031800 2912100 2119700 7895900 4260700 3635200 46658000 27555000 19102000 17735000 9574100 8160400 7204700 3764700 3440000 1315600 674380 641200 15346 3879 15977 79208;79209;79210;79211;79212;79213;79214;79215;79216;79217;79218;79219;79220;79221;79222;79223;79224 80425;80426;80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438;80439;80440;80441;80442 80437 18 ILEQENEHLNQTVSSLR KTIETLRENSERQIKILEQENEHLNQTVSS EQENEHLNQTVSSLRQRSQISAEARVKDIE K I L L R Q 0 1 2 0 0 2 3 0 1 1 3 0 0 0 0 2 1 0 0 1 0 0 17 0 2009.0178 Q3V6T2;A0A2R8YGU1;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8YG52;A0A087WXD9;A0A2R8Y6B2;A0A2R8Y7D9 Q3V6T2 555 571 CCDC88A Girdin yes no 3 0.045278 20.65 By MS/MS 1 1.4105 1.2063 NaN 1 Median NaN NaN NaN 0 0 Median 1.4105 1.2063 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4689900 1690500 2999400 0 0 0 4689900 1690500 2999400 0 0 0 0 0 0 0 0 0 0 0 0 15347 367 15978 79225 80443 80443 1 ILEQQNSSR RQFEDEKANWEAQQRILEQQNSSRTLEKNK WEAQQRILEQQNSSRTLEKNKKKGKIF___ R I L S R T 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1073.5465 E7ES33;E7EPK1;Q16181;G3V1Q4;Q5JXL7 E7ES33 397 405 SEPT7;DKFZp586I031 Septin-7 yes no 2 0.0044715 60.59 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.0109 0.9852 5.5951 5 Median 1.0109 0.9852 NaN 1 0 Median 1.1813 1.046 NaN 1 0 Median 0.9812 0.97804 NaN 1 0 Median 1.2276 1.0779 NaN 1 0 Median 0.93147 0.93707 NaN 1 0 Median NaN NaN NaN 0 0 Median 7911100 4004700 3906500 280910 127100 153810 431210 208140 223070 6700300 3419700 3280600 229210 97787 131420 269490 151930 117560 0 0 0 15348 870 15979 79226;79227;79228;79229;79230 80444;80445;80446 80445 3 ILESSQTLLSVLKR EFDRTIAETEAAYLKILESSQTLLSVLKRE KILESSQTLLSVLKREAGNLTKATAPDQKS K I L K R E 0 1 0 0 0 1 1 0 0 1 4 1 0 0 0 3 1 0 0 1 0 0 14 1 1585.9403 O43805 O43805 85 98 SSNA1 Sjoegren syndrome nuclear autoantigen 1 yes yes 3 0.011234 24.558 By MS/MS By matching By matching 1 1 1 1.0838 0.99305 8.7457 3 Median 1.0127 0.99305 NaN 1 0 Median 1.091 0.96323 NaN 1 0 Median 1.0838 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4521700 2038000 2483700 3421500 1454400 1967100 182620 82345 100270 917530 501210 416330 0 0 0 0 0 0 0 0 0 15349 1591 15980 79231;79232;79233 80447 80447 1 ILESTLK ELSRKTQIPEVFLTKILESTLKSLDECCHS IPEVFLTKILESTLKSLDECCHSESSTACL K I L L K S 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 7 0 802.48002 CON__Q3MHN5 CON__Q3MHN5 363 369 no no 2 0.011827 79.454 By matching By MS/MS By matching By matching 1 4 1 1 1.0654 0.96747 81.426 7 Median 1.292 1.3028 NaN 1 0 Median 1.0266 0.89221 88.186 4 1 Median 1.0654 1.1518 NaN 1 0 Median 2.5437 2.129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20272000 10383000 9889200 1325500 497860 827650 15779000 8214000 7564700 2667100 1542400 1124700 501180 128970 372210 0 0 0 0 0 0 + 15350 776 15981 79234;79235;79236;79237;79238;79239;79240 80448;80449 80448 2 ILESVAEGR RKESAKEKQLKEEEKILESVAEGRALMSVK LKEEEKILESVAEGRALMSVKEMAKGITYD K I L G R A 1 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 972.52401 Q9UJV9;A0A499FJW5;H0YA06;D6RGI7 Q9UJV9 116 124 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 2 0.0076908 67.993 By MS/MS 1 1.059 0.91904 NaN 1 Median NaN NaN NaN 0 0 Median 1.059 0.91904 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3112700 1427700 1685000 0 0 0 3112700 1427700 1685000 0 0 0 0 0 0 0 0 0 0 0 0 15351 4299 15982 79241 80450 80450 1 ILETTTFFQR EQLDPDELETITMHKILETTTFFQRAVYLG ITMHKILETTTFFQRAVYLGELPHDQDVVE K I L Q R A 0 1 0 0 0 1 1 0 0 1 1 0 0 2 0 0 3 0 0 0 0 0 10 0 1254.6608 Q9NYU2 Q9NYU2 659 668 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 5.1436E-05 135.83 By MS/MS 2 1.113 1.0643 0.10027 2 Median 1.113 1.0643 0.10027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30597000 14172000 16425000 30597000 14172000 16425000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15352 4179 15983 79242;79243 80451;80452;80453 80452 3 ILEVHIDK RCKSCNGRKIVREKKILEVHIDKGMKDGQK KIVREKKILEVHIDKGMKDGQKITFHGEGD K I L D K G 0 0 0 1 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 965.55458 P31689 P31689 207 214 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.033059 58.426 By MS/MS 1 1.0885 1.0653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0885 1.0653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6590400 2952500 3637800 0 0 0 0 0 0 6590400 2952500 3637800 0 0 0 0 0 0 0 0 0 15353 2204 15984 79244 80454 80454 1 ILEVHVDK RCKKCEGKKVIKEVKILEVHVDKGMKHGQR KVIKEVKILEVHVDKGMKHGQRITFTGEAD K I L D K G 0 0 0 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 951.53893 O60884 O60884 216 223 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2 0.014305 51.346 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3333 1.258 19.468 5 Median 1.3333 1.258 NaN 1 0 Median 1.2338 1.075 25.805 2 0 Median 1.4307 1.4188 NaN 1 0 Median 1.0994 0.98566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17788000 7581800 10206000 5173000 2156300 3016700 3720800 1769400 1951400 3096100 1117300 1978800 5797800 2538800 3259000 0 0 0 0 0 0 15354 1637 15985 79245;79246;79247;79248;79249 80455;80456;80457;80458;80459 80456 5 ILEVVKDK LRACRRLNDFASTVRILEVVKDKAGPHKEI DFASTVRILEVVKDKAGPHKEIYPYVIQEL R I L D K A 0 0 0 1 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 2 0 0 8 1 942.57498 P20674;H3BRM5;H3BV69 P20674 108 115 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 0.019613 83.265 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2491 1.1671 11.178 4 Median 0.99939 0.93589 NaN 1 0 Median 1.3564 1.1759 NaN 1 0 Median 1.1503 1.1735 NaN 1 0 Median 1.3839 1.1608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89235000 39394000 49841000 37415000 17786000 19630000 47381000 19495000 27886000 3520900 1719400 1801500 917720 393140 524590 0 0 0 0 0 0 15355 2083 15986 79250;79251;79252;79253 80460;80461;80462;80463;80464 80462 5 ILEVVNQIQDEER NNCGETEQDTEKMKKILEVVNQIQDEERMV KKILEVVNQIQDEERMVQSQKSSSPLSSTR K I L E R M 0 1 1 1 0 2 3 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 13 0 1583.8155 O94919 O94919 282 294 ENDOD1 Endonuclease domain-containing 1 protein yes yes 2 3.5884E-16 151.15 By MS/MS By MS/MS 2 1 0.7421 0.70776 22.013 3 Median 0.66418 0.64076 14.064 2 1 Median 1.0928 0.90037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27543000 15235000 12307000 19720000 11414000 8306200 7822500 3821300 4001100 0 0 0 0 0 0 0 0 0 0 0 0 15356 1737 15987 79254;79255;79256 80465;80466;80467;80468 80465 4 ILFAPGSEEAIER ALSSRAASVSSLHERILFAPGSEEAIERLK ERILFAPGSEEAIERLKETEKIIAELNETW R I L E R L 2 1 0 0 0 0 3 1 0 2 1 0 0 1 1 1 0 0 0 0 0 0 13 0 1430.7405 A0A3B3ITK3;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;A0A3B3ITW6;Q12756;H7C0K6 A0A3B3ITK3 170 182 KIF1A Kinesin-like protein KIF1A;Kinesin-like protein yes no 2 0.025504 28.013 By matching By MS/MS 1 1 0.81842 0.72796 26.247 2 Median 0.63496 0.60465 NaN 1 0 Median 1.0549 0.87642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6635800 3989900 2645900 5328700 3371800 1957000 1307100 618070 688980 0 0 0 0 0 0 0 0 0 0 0 0 15357 431 15988 79257;79258 80469 80469 1 ILFFNTPK IEKAYEKILFTEATRILFFNTPKKMTDYAK LFTEATRILFFNTPKKMTDYAKKRGWVLGP R I L P K K 0 0 1 0 0 0 0 0 0 1 1 1 0 2 1 0 1 0 0 0 0 0 8 0 978.55385 R4GMR5;P48556;K7EJR3;K7EJC1 R4GMR5 227 234 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.022207 45.081 By MS/MS By matching By matching By matching By matching By matching 3 2 1 1 1 2 1.0741 0.94166 19.305 10 Median 0.89095 0.85256 15.138 3 0 Median 1.021 0.86508 13.155 2 0 Median 1.0431 0.98777 NaN 1 0 Median 1.1585 0.99009 NaN 1 0 Median 1.3732 1.4092 NaN 1 0 Median 1.1646 0.96818 5.088 2 0 Median 70615000 34792000 35823000 57550000 28505000 29045000 6872900 3403100 3469800 1041800 527560 514200 411110 192030 219090 4192400 1913300 2279100 546920 251040 295880 15358 2362 15989 79259;79260;79261;79262;79263;79264;79265;79266;79267;79268 80470;80471;80472 80470 3 ILFIFIDSDHTDNQR KLSNFKTAAESFKGKILFIFIDSDHTDNQR ILFIFIDSDHTDNQRILEFFGLKKEECPAV K I L Q R I 0 1 1 3 0 1 0 0 1 3 1 0 0 2 0 1 1 0 0 0 0 0 15 0 1832.9057 P07237;H7BZ94;H0Y3Z3;I3L398;I3L4M2 P07237 286 300 P4HB Protein disulfide-isomerase yes no 2;3 0.00011471 79.693 By MS/MS By MS/MS 2 2 1.4746 1.4963 20.035 4 Linear 1.1968 1.1744 30.102 2 0 Median 1.5728 1.3372 11.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18577000 7119400 11458000 9180000 3642100 5537900 9397200 3477300 5919900 0 0 0 0 0 0 0 0 0 0 0 0 15359 1883 15990 79269;79270;79271;79272 80473;80474;80475;80476 80473 4 ILFIGGITAPTVR HIFVFQASHPLSWGRILFIGGITAPTVRQY GRILFIGGITAPTVRQYYAYLTDTQCKRVG R I L V R Q 1 1 0 0 0 0 0 2 0 3 1 0 0 1 1 0 2 0 0 1 0 0 13 0 1356.8129 P48651 P48651 324 336 PTDSS1 Phosphatidylserine synthase 1 yes yes 2;3 2.0999E-05 94.297 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.1543 1.0311 12.255 7 Median 0.89326 0.89809 2.7798 2 0 Median 1.1943 1.0311 3.9211 3 0 Median 1.1142 1.2543 NaN 1 0 Median 1.304 1.1371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16264000 6664700 9598900 4718900 2602900 2116100 8467300 3608800 4858500 3020300 423690 2596600 57032 29309 27723 0 0 0 0 0 0 15360 2365 15991 79273;79274;79275;79276;79277;79278;79279;79280 80477;80478;80479;80480;80481;80482;80483 80482 7 ILFLDPSGK PKDEDFSPDGGYIPRILFLDPSGKVHPEII GGYIPRILFLDPSGKVHPEIINENGNPSYK R I L G K V 0 0 0 1 0 0 0 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 9 0 988.55933 O95881 O95881 115 123 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 2 0.00069823 103.83 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 1.1895 1.1522 16.838 7 Median 0.92176 0.86741 NaN 1 0 Median 1.2051 1.0387 18.689 2 0 Median 1.1895 1.1522 NaN 1 0 Median 1.2363 1.0317 19.554 2 0 Median NaN NaN NaN 0 0 Median 1.52 1.3181 NaN 1 0 Median 35322000 16849000 18474000 27931000 13615000 14316000 2006200 1033200 973040 4752200 1955000 2797200 499270 198900 300370 0 0 0 133610 46244 87361 15361 1802 15992 79281;79282;79283;79284;79285;79286;79287 80484;80485;80486;80487;80488;80489;80490 80486 7 ILFNNAVK LFPGFEIETVKNNLRILFNNAVKKRLMTDR TVKNNLRILFNNAVKKRLMTDRRIGCLLSG R I L V K K 1 0 2 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 917.53345 P08243;F8WEJ5 P08243 237 244 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.0083383 63.287 By MS/MS By matching 1 1 1.3561 1.2171 41.154 2 Median 1.7357 1.6282 NaN 1 0 Median 1.0594 0.90981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14720000 4965500 9754200 12582000 3975900 8606000 2137800 989530 1148300 0 0 0 0 0 0 0 0 0 0 0 0 15362 1901 15993 79288;79289 80491 80491 1 ILFQEFR VLEGIRICRQGFPNRILFQEFRQRYEILTP CRQGFPNRILFQEFRQRYEILTPNAIPKGF R I L F R Q 0 1 0 0 0 1 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 7 0 951.5178 Q7Z406 Q7Z406 736 742 MYH14 Myosin-14 no no 2 0.0096554 83.614 By MS/MS 1 1.2724 1.2237 NaN 1 Median 1.2724 1.2237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4403000 2009400 2393700 4403000 2009400 2393700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15363 3242 15994 79290 80492;80493 80492 2 ILFRPVASQLPR ITGSKDLQNVNITLRILFRPVASQLPRIFT TLRILFRPVASQLPRIFTSIGEDYDERVLP R I L P R I 1 2 0 0 0 1 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 12 1 1395.8351 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2;D6RBK0 P35232 94 105 PHB Prohibitin yes no 2;3 1.7122E-06 130.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 3 3 1 2 0.92839 0.93728 24.719 22 Median 0.73832 0.77957 19.684 6 0 Median 1.1397 0.98538 16.38 7 0 Median 0.79361 0.82285 11.38 3 0 Median 1.3078 1.171 11.391 3 0 Median 0.84944 0.92123 NaN 1 0 Median 1.0334 0.92059 53.205 2 0 Median 794180000 435770000 358410000 547630000 310270000 237370000 100560000 46663000 53895000 98048000 53939000 44109000 5588200 2187100 3401100 19681000 11042000 8638800 22674000 11670000 11005000 15364 2233 15995 79291;79292;79293;79294;79295;79296;79297;79298;79299;79300;79301;79302;79303;79304;79305;79306;79307;79308;79309;79310;79311;79312 80494;80495;80496;80497;80498;80499;80500;80501;80502;80503;80504;80505;80506;80507;80508;80509;80510;80511;80512;80513;80514;80515;80516;80517 80501 24 ILFSIREPIANR NEYNESLLYSPEEPKILFSIREPIANRVFS EPKILFSIREPIANRVFSSSRQRCFSSKVC K I L N R V 1 2 1 0 0 0 1 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 12 1 1427.8249 A0A0C4DGV3;B7Z8V7;Q4G0N4;H0Y9H7 A0A0C4DGV3 178 189 NADK2 NAD kinase 2, mitochondrial yes no 3 0.0028923 37.681 By MS/MS 2 0.93238 0.96415 14.614 2 Median 0.93238 0.96415 14.614 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4311800 2286200 2025600 4311800 2286200 2025600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15365 255 15996 79313;79314 80518;80519 80519 2 ILFTEATR IRDEIAGCIEKAYEKILFTEATRILFFNTP IEKAYEKILFTEATRILFFNTPKKMTDYAK K I L T R I 1 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 8 0 949.52328 R4GMR5;P48556;K7EJR3;K7EJC1 R4GMR5 219 226 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.002851 130.04 By MS/MS By MS/MS 1 2 1.2799 1.0873 12.584 3 Median 1.1647 1.0873 NaN 1 0 Median 1.4196 1.1928 16.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86369000 39050000 47319000 65782000 30230000 35552000 20587000 8820000 11767000 0 0 0 0 0 0 0 0 0 0 0 0 15366 2362 15997 79315;79316;79317 80520;80521;80522;80523;80524 80520 5 ILGADTSVDLEETGR QKTGTAEMSSILEERILGADTSVDLEETGR ILGADTSVDLEETGRVLSIGDGIARVHGLR R I L G R V 1 1 0 2 0 0 2 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 15 0 1574.7788 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4;K7ESA0 P25705 59 73 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 4.177E-10 163.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 2 1 1 1.1145 0.95849 25.905 11 Median 1.0011 0.93082 NaN 1 0 Median 1.3061 1.0943 17.021 3 0 Median 1.219 0.95849 19.506 3 0 Plateau 1.357 1.161 28.193 2 0 Median 1.7175 1.7216 NaN 1 0 Median 0.84175 0.69002 NaN 1 0 Median 162280000 73572000 88711000 61916000 29930000 31986000 44337000 18748000 25589000 46803000 21223000 25580000 4197500 1625900 2571700 4277500 1675200 2602300 751490 369570 381920 15367 2135 15998 79318;79319;79320;79321;79322;79323;79324;79325;79326;79327;79328 80525;80526;80527;80528;80529;80530;80531;80532;80533;80534;80535;80536;80537;80538;80539 80529 15 ILGATIENSR DYSHYYTTIQDLRDKILGATIENSRIVLQI DLRDKILGATIENSRIVLQIDNARLAADDF K I L S R I 1 1 1 0 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1072.5877 CON__P08727;P08727 CON__P08727 141 150 KRT19 Keratin, type I cytoskeletal 19 yes no 2 1.4897E-05 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 2 5 1.2525 1.1984 15.242 13 Median 1.0246 1.0272 NaN 1 0 Median 1.8081 1.5741 NaN 1 0 Median 1.2121 1.215 5.9738 3 0 Median 1.4629 1.1984 NaN 1 0 Median 1.1587 1.1542 1.8162 2 0 Median 1.5409 1.2301 20.437 5 0 Median 518820000 228110000 290710000 40038000 17768000 22269000 35412000 12429000 22983000 191380000 93500000 97881000 40045000 16950000 23095000 92682000 42314000 50368000 119260000 45146000 74113000 + 15368 752 15999 79329;79330;79331;79332;79333;79334;79335;79336;79337;79338;79339;79340;79341 80540;80541;80542;80543;80544;80545;80546;80547;80548;80549;80550;80551;80552;80553;80554;80555;80556;80557;80558;80559 80541 20 ILGAWLAEETSSLR GSEKQKEPFVFASVRILGAWLAEETSSLRK RILGAWLAEETSSLRKEVCQLLPFLVRYAK R I L L R K 2 1 0 0 0 0 2 1 0 1 3 0 0 0 0 2 1 1 0 0 0 0 14 0 1544.8199 Q9UBB6 Q9UBB6 398 411 NCDN Neurochondrin yes yes 2 0.00070644 63.283 By MS/MS 1 1.5497 1.345 NaN 1 Median NaN NaN NaN 0 0 Median 1.5497 1.345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3138000 1366000 1772000 0 0 0 3138000 1366000 1772000 0 0 0 0 0 0 0 0 0 0 0 0 15369 4234 16000 79342 80560;80561 80561 2 ILGDLSYR LRLRQHWKLRKVGDKILGDLSYRSAGSLFP LRKVGDKILGDLSYRSAGSLFPHHGTFEVI K I L Y R S 0 1 0 1 0 0 0 1 0 1 2 0 0 0 0 1 0 0 1 0 0 0 8 0 935.50763 A0A1W2PRB8;A0A1W2PNF3;A0A1W2PPP8 A0A1W2PRB8 390 397 no no 2 0.0035902 86.953 By MS/MS 1 1.0715 1.0935 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0715 1.0935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9385400 4979200 4406200 0 0 0 0 0 0 9385400 4979200 4406200 0 0 0 0 0 0 0 0 0 15370 346 16001 79343 80562;80563 80562 2 ILGENEEEEDLAESGR TKGAPKNTTKSWQGRILGENEEEEDLAESG LGENEEEEDLAESGRLFVRNLPYTSTEEDL R I L G R L 1 1 1 1 0 0 6 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1788.8014 Q9Y4C8 Q9Y4C8 388 403 RBM19 Probable RNA-binding protein 19 yes yes 2 1.1596E-06 91.914 By matching By MS/MS By matching 1 1 1 1.1452 0.9512 35.032 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0237 1.736 NaN 1 0 Median 0.90489 0.9512 NaN 1 0 Median 1.1452 0.94155 NaN 1 0 Median 5400500 2699900 2700600 0 0 0 0 0 0 0 0 0 616650 195650 421000 4273300 2269100 2004100 510570 235150 275420 15371 4444 16002 79344;79345;79346 80564 80564 1 ILGIPVIVTEQYPK GDIISVGQRLLQGARILGIPVIVTEQYPKG RILGIPVIVTEQYPKGLGSTVQEIDLTGVK R I L P K G 0 0 0 0 0 1 1 1 0 3 1 1 0 0 2 0 1 0 1 2 0 0 14 0 1568.9178 Q96CN7;D6RGE2 Q96CN7 149 162 ISOC1 Isochorismatase domain-containing protein 1 yes no 2 0.00010387 82.417 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.87546 0.78179 4.6092 6 Median 0.82884 0.78875 9.2593 2 0 Median 0.9169 0.79147 3.7468 2 0 Median 0.81626 0.79296 NaN 1 0 Median 0.90231 0.76936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34055000 18029000 16026000 19139000 10143000 8996000 13230000 6989200 6241300 1356900 730390 626500 329190 166990 162200 0 0 0 0 0 0 15372 3619 16003 79347;79348;79349;79350;79351;79352 80565;80566;80567;80568;80569;80570;80571 80567 7 ILGLAIESQDAGIK RAHQITDESLESTRRILGLAIESQDAGIKT RILGLAIESQDAGIKTITMLDEQKEQLNRI R I L I K T 2 0 0 1 0 1 1 2 0 3 2 1 0 0 0 1 0 0 0 0 0 0 14 0 1426.8031 H3BNE1;H3BR18;H3BM38;H3BPJ0;O00161 H3BNE1 27 40 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 2 1.1647E-06 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1371 1.0742 20.436 6 Median 1.1503 1.0693 NaN 1 0 Median 1.1387 0.97477 14.391 2 0 Median 1.4106 1.3339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88715 0.92555 30.173 2 0 Median NaN NaN NaN 0 0 Median 28759000 13116000 15642000 6126100 2606400 3519700 4485200 2145000 2340200 4802700 1960400 2842200 0 0 0 13345000 6404200 6940400 0 0 0 15373 1209 16004 79353;79354;79355;79356;79357;79358 80572;80573;80574;80575;80576;80577;80578 80572 7 ILGLAPSR LYILCTMSIRQNIQKILGLAPSRAATKQAG IRQNIQKILGLAPSRAATKQAGGFLGPPPP K I L S R A 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 8 0 825.50724 J3QQY2;Q9UM00 J3QQY2 77 84 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 2 0.0078694 65.252 By MS/MS By MS/MS By MS/MS 1 3 1 1.3222 1.134 43.042 5 Median 1.3222 1.2979 NaN 1 0 Median 1.4021 1.134 57.983 3 1 Median 1.1768 1.1216 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20899000 8501100 12398000 6729800 3046200 3683600 10689000 3875100 6813900 3480400 1579700 1900700 0 0 0 0 0 0 0 0 0 15374 1345 16005 79359;79360;79361;79362;79363 80579;80580;80581;80582;80583 80580 5 ILGLEQQLK TLRETQEENDEFRRRILGLEQQLKETRGLV DEFRRRILGLEQQLKETRGLVDGGEAVEAR R I L L K E 0 0 0 0 0 2 1 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1040.623 Q9P2M7 Q9P2M7 733 741 CGN Cingulin yes yes 2 0.0055852 57.177 By MS/MS 1 0.92775 0.97641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92775 0.97641 NaN 1 0 Median NaN NaN NaN 0 0 Median 3305800 1660800 1645000 0 0 0 0 0 0 0 0 0 0 0 0 3305800 1660800 1645000 0 0 0 15375 4226 16006 79364 80584;80585 80584 2 ILGLGDLGVYGMGIPVGK PENHVKAVVVTDGERILGLGDLGVYGMGIP LGDLGVYGMGIPVGKLCLYTACAGIRPDRC R I L G K L 0 0 0 1 0 0 0 6 0 2 3 1 1 0 1 0 0 0 1 2 0 0 18 0 1757.975 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PQF8;A0A1W2PQ37 A0A1W2PPH1 166 183 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.0029884 31.597 By MS/MS By matching 1 2 1.1838 1.0288 4.542 3 Median 1.0138 0.97552 NaN 1 0 Median 1.1957 1.0481 2.6276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4515600 2235000 2280600 3017200 1503600 1513600 1498400 731420 766970 0 0 0 0 0 0 0 0 0 0 0 0 15376 337 16007 79365;79366;79367 80586;80587 80587 2 ILGLLDAYLK HNKQATENAKEEVRRILGLLDAYLKTRTFL EEVRRILGLLDAYLKTRTFLVGERVTLADI R I L L K T 1 0 0 1 0 0 0 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1117.6747 P26641 P26641 138 147 EEF1G Elongation factor 1-gamma yes yes 2 0.0004183 88.948 By MS/MS By matching By MS/MS By MS/MS By matching By matching 6 3 6 9 3 6 1.2826 1.2076 23.881 33 Median 1.2707 1.2236 13.579 6 0 Median 1.1649 0.97831 5.2878 3 0 Median 1.3759 1.3717 7.6588 6 0 Median 1.305 1.1136 19.764 9 0 Median 1.4481 1.4327 23.115 3 0 Median 1.2303 0.99301 41.738 6 0 Median 4850400000 2101400000 2749000000 33458000 14589000 18869000 18458000 8418600 10039000 2133600000 889060000 1244600000 2627300000 1173600000 1453800000 10774000 4303100 6470800 26747000 11450000 15297000 15377 2149 16008 79368;79369;79370;79371;79372;79373;79374;79375;79376;79377;79378;79379;79380;79381;79382;79383;79384;79385;79386;79387;79388;79389;79390;79391;79392;79393;79394;79395;79396;79397;79398;79399;79400 80588;80589;80590;80591;80592;80593 80591 6 ILGLLQTYFR MEESHQEATEKEVERILGLLQTYFREDPDT KEVERILGLLQTYFREDPDTPMSFFDFVVD R I L F R E 0 1 0 0 0 1 0 1 0 1 3 0 0 1 0 0 1 0 1 0 0 0 10 0 1222.7074 Q9NXX6;Q8N140 Q9NXX6 270 279 NSMCE4A;EID3 Non-structural maintenance of chromosomes element 4 homolog A;EP300-interacting inhibitor of differentiation 3 yes no 2 0.010957 43.246 By MS/MS 2 0.62846 0.62461 76.809 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62846 0.62461 76.809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4361700 1675400 2686300 0 0 0 0 0 0 4361700 1675400 2686300 0 0 0 0 0 0 0 0 0 15378 4170 16009 79401;79402 80594 80594 1 ILGNTFTDTVGNILK AAVVCLGSLYKKLGRILGNTFTDTVGNILK ILGNTFTDTVGNILKAMKSAESQGRYEIML R I L L K A 0 0 2 1 0 0 0 2 0 2 2 1 0 1 0 0 3 0 0 1 0 0 15 0 1604.8774 Q86XA9;F5H619 Q86XA9 129 143 HEATR5A HEAT repeat-containing protein 5A yes no 2 0.0056256 34.887 By matching By MS/MS 1 1 1.1485 1.0565 13.045 2 Median 1.0071 0.96339 NaN 1 0 Median 1.3097 1.1586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2834000 1128200 1705800 646780 336370 310410 2187200 791830 1395400 0 0 0 0 0 0 0 0 0 0 0 0 15379 1039 16010 79403;79404 80595 80595 1 ILGPGLNK DAFLASESLIKQIPRILGPGLNKAGKFPSL LIKQIPRILGPGLNKAGKFPSLLTHNENMV R I L N K A 0 0 1 0 0 0 0 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 810.49634 P62906 P62906 123 130 RPL10A 60S ribosomal protein L10a yes yes 2 0.0027509 105.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 1 2 3 4 1.0685 0.9263 13.761 18 Median 0.99012 0.91423 22.292 5 0 Median 1.0421 0.86857 18.025 3 0 Median 0.9845 0.92336 NaN 1 0 Median 1.1962 0.98929 2.2928 2 0 Median 0.91004 1.0571 12.182 3 0 Median 1.1041 0.92595 1.7817 4 0 Median 183230000 89197000 94035000 59540000 28846000 30694000 22506000 11188000 11317000 35250000 17464000 17786000 8473100 3778700 4694500 44860000 21915000 22945000 12602000 6004400 6597900 15380 2608 16011 79405;79406;79407;79408;79409;79410;79411;79412;79413;79414;79415;79416;79417;79418;79419;79420;79421;79422 80596;80597;80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610;80611 80604 16 ILGPQGNTIK LIPVKQYPKFNFVGKILGPQGNTIKRLQEE NFVGKILGPQGNTIKRLQEETGAKISVLGK K I L I K R 0 0 1 0 0 1 0 2 0 2 1 1 0 0 1 0 1 0 0 0 0 0 10 0 1039.6026 Q07666 Q07666 176 185 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2 0.00013954 131.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 6 1 4 1.1138 0.96583 19.629 22 Median 1.3588 1.3166 31.48 2 0 Median 1.2177 1.03 10.789 4 0 Median 0.97564 1.0376 26.766 5 0 Median 1.1231 0.94823 6.6313 6 0 Median 0.73304 0.69976 NaN 1 0 Median 1.1322 0.90492 2.9718 4 0 Linear 250250000 124050000 126200000 5652500 2520400 3132100 13530000 6078200 7452300 103060000 55138000 47919000 91849000 42984000 48866000 12406000 6922400 5483900 23750000 10404000 13345000 15381 2731 16012 79423;79424;79425;79426;79427;79428;79429;79430;79431;79432;79433;79434;79435;79436;79437;79438;79439;79440;79441;79442;79443;79444 80612;80613;80614;80615;80616;80617;80618;80619;80620;80621;80622;80623;80624;80625;80626;80627;80628;80629;80630;80631;80632;80633;80634;80635;80636;80637;80638;80639;80640;80641 80616 30 ILGPQGNTIKR LIPVKQYPKFNFVGKILGPQGNTIKRLQEE FVGKILGPQGNTIKRLQEETGAKISVLGKG K I L K R L 0 1 1 0 0 1 0 2 0 2 1 1 0 0 1 0 1 0 0 0 0 0 11 1 1195.7037 Q07666 Q07666 176 186 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 1.7554E-05 117.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 6 3 3 1.3298 1.2807 21.682 17 Median 1.5761 1.5999 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2149 1.3021 24.005 4 2 Median 1.4059 1.3241 18.433 6 5 Median 0.98496 1.0615 22.267 3 2 Median 1.1792 1.0676 16.736 3 1 Median 68792000 15815000 52977000 1371700 129070 1242600 0 0 0 11541000 3525900 8014700 35069000 5631800 29437000 13194000 4239500 8954900 7616200 2288400 5327800 15382 2731 16013 79445;79446;79447;79448;79449;79450;79451;79452;79453;79454;79455;79456;79457;79458;79459;79460;79461 80642;80643;80644;80645;80646;80647;80648;80649;80650;80651;80652;80653;80654;80655;80656;80657;80658;80659;80660 80647 19 ILGSGISSSSVLHGMVFK PDSGHFNVDNIRVCKILGSGISSSSVLHGM SGISSSSVLHGMVFKKETEGDVTSVKDAKI K I L F K K 0 0 0 0 0 0 0 3 1 2 2 1 1 1 0 5 0 0 0 2 0 0 18 0 1817.971 P50990 P50990 207 224 CCT8 T-complex protein 1 subunit theta yes yes 3 4.4606E-05 45.618 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2509 1.1371 10.59 5 Median 1.2006 1.1371 NaN 1 0 Median 1.2257 1.0558 5.989 2 0 Median 1.3722 1.3358 NaN 1 0 Median 1.399 1.2282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112640000 50721000 61920000 8293300 3359100 4934300 93404000 43046000 50359000 10597000 4195700 6401300 347000 120850 226140 0 0 0 0 0 0 15383 2423 16014 79462;79463;79464;79465;79466 80661;80662;80663 80662 3 ILGSGISSSSVLHGMVFKK PDSGHFNVDNIRVCKILGSGISSSSVLHGM GISSSSVLHGMVFKKETEGDVTSVKDAKIA K I L K K E 0 0 0 0 0 0 0 3 1 2 2 2 1 1 0 5 0 0 0 2 0 0 19 1 1946.0659 P50990 P50990 207 225 CCT8 T-complex protein 1 subunit theta yes yes 4 0.007478 22.653 By MS/MS By matching 2 1 1.2776 1.2178 19.511 3 Plateau 1.2322 1.1744 5.6544 2 0 Median 0.89324 0.84369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9119000 3872800 5246200 8896800 3803300 5093500 222250 69502 152740 0 0 0 0 0 0 0 0 0 0 0 0 15384 2423 16015 79467;79468;79469 80664;80665 80664 2 ILGSLYAASEDQEK EKVLKAYPNNYETMKILGSLYAASEDQEKR KILGSLYAASEDQEKRDIAKGHLKKVTEQY K I L E K R 2 0 0 1 0 1 2 1 0 1 2 1 0 0 0 2 0 0 1 0 0 0 14 0 1522.7515 Q6PD62 Q6PD62 380 393 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 3.2725E-07 109.24 By MS/MS By MS/MS 1 1 0.93119 0.89769 19.681 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95104 1.0317 NaN 1 1 Median 0.91176 0.78107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7873000 4050500 3822500 0 0 0 0 0 0 4890900 2516000 2374900 2982000 1534400 1447600 0 0 0 0 0 0 15385 3168 16016 79470;79471 80666;80667 80667 2 ILGSLYAASEDQEKR EKVLKAYPNNYETMKILGSLYAASEDQEKR ILGSLYAASEDQEKRDIAKGHLKKVTEQYP K I L K R D 2 1 0 1 0 1 2 1 0 1 2 1 0 0 0 2 0 0 1 0 0 0 15 1 1678.8526 Q6PD62 Q6PD62 380 394 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2;3 3.4586E-33 165.7 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 3 3 1 1 1.1383 1.1852 16.927 11 Median 0.96577 1.0059 23.192 2 0 Median 1.2596 1.1834 NaN 1 0 Median 1.0564 1.1988 11.676 3 1 Median 1.2578 1.205 9.6514 3 0 Median 1.4914 1.6943 NaN 1 0 Median 1.2925 1.1301 NaN 1 0 Median 107710000 52180000 55531000 18653000 9443400 9209700 4258000 1750700 2507400 60405000 29708000 30697000 21316000 9904600 11411000 1974200 734080 1240100 1104600 639380 465250 15386 3168 16017 79472;79473;79474;79475;79476;79477;79478;79479;79480;79481;79482 80668;80669;80670;80671;80672;80673;80674;80675;80676;80677 80673 10 ILGTAGTEEGQK VGLAACQIARAYGLKILGTAGTEEGQKIVL GLKILGTAGTEEGQKIVLQNGAHEVFNHRE K I L Q K I 1 0 0 0 0 1 2 3 0 1 1 1 0 0 0 0 2 0 0 0 0 0 12 0 1202.6143 Q08257;A6NP24;C9JH92 Q08257 176 187 CRYZ Quinone oxidoreductase yes no 2 0.00063729 63.216 By MS/MS By MS/MS 1 1 1.0047 0.9147 3.4782 2 Median 0.90966 0.89248 NaN 1 0 Median 1.1096 0.93747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3331000 1401000 1930100 1806100 823890 982230 1524900 577070 947860 0 0 0 0 0 0 0 0 0 0 0 0 15387 2737 16018 79483;79484 80678;80679;80680;80681 80680 4 ILGTPDYLAPELLLGR PKSVRRGVAPVDDGRILGTPDYLAPELLLG LGTPDYLAPELLLGRAHGPAVDWWALGVCL R I L G R A 1 1 0 1 0 0 1 2 0 1 5 0 0 0 2 0 1 0 1 0 0 0 16 0 1739.9822 Q96GX5;A0A087WUU7 Q96GX5 738 753 MASTL Serine/threonine-protein kinase greatwall yes no 2 0.00023051 49.5 By MS/MS By matching 2 1 0.5634 0.56899 18.978 3 Median 0.63239 0.6156 11.134 2 0 Median NaN NaN NaN 0 0 Median 0.4426 0.45646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473800 907960 565880 1218200 724780 493440 0 0 0 255630 183180 72445 0 0 0 0 0 0 0 0 0 15388 3662 16019 79485;79486;79487 80682 80682 1 ILGVDKNASEDEIKK AQLELKKSKRKDYYKILGVDKNASEDEIKK ILGVDKNASEDEIKKAYRKRALMHHPDRHS K I L K K A 1 0 1 2 0 0 2 1 0 2 1 3 0 0 0 1 0 0 0 1 0 0 15 2 1657.8887 Q99615 Q99615 385 399 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 3;4 0.00015722 49.188 By MS/MS 2 1.1714 1.1953 3.9596 2 Median 1.1714 1.1953 3.9596 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17127000 8026300 9100300 17127000 8026300 9100300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15389 3759 16020 79488;79489 80683;80684;80685 80684 3 ILGVGGEDDDGEVHR KHSQTDLVSRLKTRKILGVGGEDDDGEVHR ILGVGGEDDDGEVHRSKISQVLGNEIKFTI K I L H R S 0 1 0 3 0 0 2 4 1 1 1 0 0 0 0 0 0 0 0 2 0 0 15 0 1566.7274 E9PN66;E9PKN9;E9PS55;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683;E9PNB3;E9PMY0 E9PN66 27 41 TP53I11 Tumor protein p53-inducible protein 11 yes no 3 8.7019E-06 84.759 By matching By MS/MS 2 1 1.2893 1.2782 10.628 3 Median 1.1916 1.1794 11.384 2 0 Median 1.6417 1.33 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21826000 9982200 11844000 10519000 5455700 5063400 11307000 4526500 6780700 0 0 0 0 0 0 0 0 0 0 0 0 15390 940 16021 79490;79491;79492 80686 80686 1 ILGYINTGKQEGAK KTEQGPQVDETQFKKILGYINTGKQEGAKL KILGYINTGKQEGAKLLCGGGIAADRGYFI K I L A K L 1 0 1 0 0 1 1 3 0 2 1 2 0 0 0 0 1 0 1 0 0 0 14 1 1490.8093 P05091;S4R3S4 P05091 370 383 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00071971 80.706 By MS/MS 1 1.1617 1.1183 NaN 1 Median 1.1617 1.1183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3268900 1581700 1687200 3268900 1581700 1687200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15391 1860 16022 79493 80687 80687 1 ILHGLGFTPAMQR LEELDADKAEMRASRILHGLGFTPAMQRKK SRILHGLGFTPAMQRKKLKDFSGGWRMRVA R I L Q R K 1 1 0 0 0 1 0 2 1 1 2 0 1 1 1 0 1 0 0 0 0 0 13 0 1439.7707 Q9UG63;C9JHK9;C9JZV3 Q9UG63 211 223 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2;3 0.0003937 53.569 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 4 0.95462 0.80305 25.133 10 Median 1.3232 1.2657 23.508 2 0 Median 0.89879 0.77912 NaN 1 0 Median 1.008 1.0487 24.456 3 0 Median 0.91109 0.76639 6.787 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67130000 31310000 35820000 17346000 7899100 9446800 4194700 1905800 2289000 37445000 17175000 20270000 8143900 4329600 3814300 0 0 0 0 0 0 15392 4262 16023;16024 79494;79495;79496;79497;79498;79499;79500;79501;79502;79503 80688;80689;80690;80691;80692;80693;80694;80695;80696;80697;80698 80689 1910 11 ILHGSVGYLTPR AIMYWKATNAGPLDKILHGSVGYLTPRSGG LDKILHGSVGYLTPRSGGHLMNLKYYVSPS K I L P R S 0 1 0 0 0 0 0 2 1 1 2 0 0 0 1 1 1 0 1 1 0 0 12 0 1311.7299 Q15648 Q15648 203 214 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 3 0.00010849 79.82 By MS/MS By matching 3 1 0.88118 0.9163 30.935 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85209 0.93107 32.446 3 0 Median 0.91127 0.80269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15494000 7779400 7714300 0 0 0 0 0 0 14770000 7353800 7416200 723690 425660 298030 0 0 0 0 0 0 15393 2961 16025 79504;79505;79506;79507 80699 80699 1 ILHLLGQEGPK CEFIEDCEFTVLATRILHLLGQEGPKTTNP LATRILHLLGQEGPKTTNPSKYIRFIYNRV R I L P K T 0 0 0 0 0 1 1 2 1 1 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1203.6976 Q9Y678 Q9Y678 455 465 COPG1 Coatomer subunit gamma-1 yes yes 2;3 3.8629E-05 110.38 By MS/MS By MS/MS By matching By matching 4 2 1 2 0.91004 0.88585 15.588 9 Median 0.87179 0.84523 13.531 4 0 Median 0.92923 0.81541 15 2 0 Median 0.96331 1.0264 NaN 1 0 Median 0.96724 0.84119 27.99 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26903000 13731000 13172000 16405000 8434700 7970600 7200300 3803100 3397200 2089900 913370 1176500 1207700 579530 628180 0 0 0 0 0 0 15394 4481 16026 79508;79509;79510;79511;79512;79513;79514;79515;79516 80700;80701;80702;80703;80704;80705;80706 80701 7 ILHLLTQEALSIHGVK GLLLKGGKEAAHSNRILHLLTQEALSIHGV LHLLTQEALSIHGVKEAVQLVNTREEVEDL R I L V K E 1 0 0 0 0 1 1 1 2 2 4 1 0 0 0 1 1 0 0 1 0 0 16 0 1771.0356 P54886 P54886 515 530 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3;4 6.1548E-06 83.499 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 6 2 3 1.374 1.2328 17.556 14 Median 1.1148 1.0195 9.1161 2 0 Median 1.448 1.2912 NaN 1 0 Median 1.3793 1.4117 16.746 6 3 Median 1.4963 1.2992 9.2452 2 1 Median NaN NaN NaN 0 0 Median 1.2951 1.113 9.3906 3 0 Median 89895000 40752000 49142000 17940000 8921800 9017900 1270300 518920 751330 65079000 29038000 36041000 4260700 1729500 2531200 0 0 0 1344600 544030 800580 15395 2488 16027 79517;79518;79519;79520;79521;79522;79523;79524;79525;79526;79527;79528;79529;79530 80707;80708;80709;80710;80711;80712;80713;80714;80715;80716;80717 80708 11 ILHQHLGAPEER YGGRDYSLDEFEANKILHQHLGAPEERLAL ANKILHQHLGAPEERLALHILRTQGLVPEH K I L E R L 1 1 0 0 0 1 2 1 2 1 2 0 0 0 1 0 0 0 0 0 0 0 12 0 1398.7368 Q9NZM1;H0YD14 Q9NZM1 1715 1726 MYOF Myoferlin yes no 3 0.0016412 39.424 By MS/MS By MS/MS 1 1 0.82592 0.76002 66.837 2 Median 1.2196 1.2192 NaN 1 0 Median 0.5593 0.47378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3650900 1995500 1655400 790070 327350 462720 2860900 1668200 1192700 0 0 0 0 0 0 0 0 0 0 0 0 15396 4192 16028 79531;79532 80718;80719;80720 80720 3 ILHTAWHPK KKDEISVDSLDFNKKILHTAWHPKENIIAV LDFNKKILHTAWHPKENIIAVATTNNLYIF K I L P K E 1 0 0 0 0 0 0 0 2 1 1 1 0 0 1 0 1 1 0 0 0 0 9 0 1101.6083 P63151;A0A590UJY3;A0A590UJJ1 P63151 419 427 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2 0.0015549 80.229 By MS/MS 2 1.009 0.85425 7.8756 2 Median NaN NaN NaN 0 0 Median 1.009 0.85425 7.8756 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5792300 2842500 2949800 0 0 0 5792300 2842500 2949800 0 0 0 0 0 0 0 0 0 0 0 0 15397 2619 16029 79533;79534 80721;80722 80722 2 ILHTLLASGEDALDFTQESEPSYISDVGPPGR HRESMLVEWEQVKQRILHTLLASGEDALDF ESEPSYISDVGPPGRSSLDNIEMAYARQIY R I L G R S 2 1 0 3 0 1 3 3 1 2 4 0 0 1 3 4 2 0 1 1 0 0 32 0 3413.6627 Q8N1F7;H3BVG0;H3BM93;H3BP95;H3BMX0 Q8N1F7 144 175 NUP93 Nuclear pore complex protein Nup93 yes no 3 2.3747E-05 29.14 By MS/MS 1 0.77492 0.68584 NaN 1 Median NaN NaN NaN 0 0 Median 0.77492 0.68584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1240100 587050 653090 0 0 0 1240100 587050 653090 0 0 0 0 0 0 0 0 0 0 0 0 15398 3356 16030 79535 80723 80723 1 ILHTYYK EKGTTEEVCRIYLLRILHTYYKFDYKAHQR VCRIYLLRILHTYYKFDYKAHQRQLTPPEG R I L Y K F 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 2 0 0 0 7 0 936.5069 Q99613;B5ME19 Q99613 507 513 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0030939 105.2 By matching By MS/MS By matching 1 2 1 1.1482 1.0521 13.261 4 Median 1.0872 1.0822 NaN 1 0 Median 1.298 1.1192 12.746 2 0 Median NaN NaN NaN 0 0 Median 1.0584 0.88966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25252000 10943000 14309000 2169400 981810 1187600 22379000 9642000 12738000 0 0 0 703570 319480 384090 0 0 0 0 0 0 15399 3757 16031 79536;79537;79538;79539 80724;80725;80726 80725 3 ILIAKPIMFR NFGFVVFDDSEPVQRILIAKPIMFRGEVRL EPVQRILIAKPIMFRGEVRLNVEEKKTRAA R I L F R G 1 1 0 0 0 0 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 10 1 1200.7417 Q9UN86 Q9UN86 388 397 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 3 0.0072891 36.334 By MS/MS 1 3.1613 3.5297 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1613 3.5297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3772400 971840 2800600 0 0 0 0 0 0 3772400 971840 2800600 0 0 0 0 0 0 0 0 0 15400 4341 16032 79540 80727 80727 1 ILIANTGMDTDK KKIGVNQPKRIENAKILIANTGMDTDKIKI NAKILIANTGMDTDKIKIFGSRVRVDSTAK K I L D K I 1 0 1 2 0 0 0 1 0 2 1 1 1 0 0 0 2 0 0 0 0 0 12 0 1290.649 P78371;F5GWF6;F8VQ14 P78371 237 248 CCT2 T-complex protein 1 subunit beta yes no 2 3.6978E-06 107.24 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.2277 1.1443 44.882 5 Median 1.5079 1.4157 30.098 2 0 Median NaN NaN NaN 0 0 Median 1.1055 1.0735 NaN 1 1 Median 1.0296 0.88337 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4876 2.7029 NaN 1 0 Median 38084000 16004000 22080000 18102000 7187800 10914000 0 0 0 13266000 6357100 6908600 4055200 1848500 2206600 0 0 0 2661400 610550 2050900 15401 2644 16033 79541;79542;79543;79544;79545;79546 80728;80729;80730;80731;80732;80733 80729 6 ILIANTGMDTDKIK KKIGVNQPKRIENAKILIANTGMDTDKIKI KILIANTGMDTDKIKIFGSRVRVDSTAKVA K I L I K I 1 0 1 2 0 0 0 1 0 3 1 2 1 0 0 0 2 0 0 0 0 0 14 1 1531.828 P78371;F5GWF6;F8VQ14 P78371 237 250 CCT2 T-complex protein 1 subunit beta yes no 2;3 2.0132E-19 155.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 4 4 3 2 2 1.1183 1.0868 57.931 24 Median 1.1626 1.0818 77.987 9 4 Median 1.0708 1.0007 10.998 4 0 Median 1.181 1.233 15.166 4 0 Median 0.98318 0.98276 11.677 3 0 Median 2.2697 2.422 10.182 2 0 Median 0.91481 0.81533 6.1957 2 0 Median 512060000 247720000 264340000 351800000 177240000 174570000 93265000 44771000 48494000 39222000 16059000 23162000 6453400 3189900 3263500 17746000 4674300 13072000 3570100 1791300 1778800 15402 2644 16034;16035 79547;79548;79549;79550;79551;79552;79553;79554;79555;79556;79557;79558;79559;79560;79561;79562;79563;79564;79565;79566;79567;79568;79569;79570 80734;80735;80736;80737;80738;80739;80740;80741;80742;80743;80744;80745;80746;80747;80748;80749;80750;80751;80752;80753;80754;80755;80756;80757;80758;80759;80760 80746 1305 27 ILIATDVASR ERFAALAKFKSSIYRILIATDVASRGLDIP SSIYRILIATDVASRGLDIPTVQVVINHNT R I L S R G 2 1 0 1 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1057.6132 Q9Y6V7 Q9Y6V7 301 310 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 2 0.00066973 96.331 By MS/MS By MS/MS By matching 1 2 1 1.2123 1.1121 3.0054 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1323 1.1103 NaN 1 0 Median 1.3148 1.1446 3.8325 2 1 Median 1.0456 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median 25313000 12226000 13087000 0 0 0 0 0 0 18819000 9057500 9761900 3476900 1567100 1909800 3016600 1601000 1415600 0 0 0 15403 4497 16036 79571;79572;79573;79574 80761;80762 80761 2 ILIEDSDQNLK PNHSASIQLCVQKLRILIEDSDQNLKYLGL QKLRILIEDSDQNLKYLGLLAMSKILKTHP R I L L K Y 0 0 1 2 0 1 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1286.6718 O14617;A0A2R8Y611;A0A2R8Y4J3 O14617 310 320 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.0001677 80.239 By matching By MS/MS 1 1 1.0056 0.89502 12.025 2 Median NaN NaN NaN 0 0 Median 0.88017 0.82206 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.149 0.97446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4023300 2113300 1909900 0 0 0 2038900 1136400 902460 0 0 0 1984400 976930 1007500 0 0 0 0 0 0 15404 1485 16037 79575;79576 80763;80764 80764 2 ILIEDWK QQMAEVTREGFRLKKILIEDWKKAREEKQK REGFRLKKILIEDWKKAREEKQKKLIELQA K I L W K K 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 7 0 915.50657 K7ELL7;P14314;K7EPW7 K7ELL7 143 149 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0054115 97.071 By MS/MS By MS/MS By matching 2 2 1 1.1653 0.97735 15.688 5 Median 0.91591 0.87519 0.25387 2 0 Median 1.1793 0.99224 2.1389 2 0 Median 1.2015 1.2841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22321000 10497000 11825000 12003000 5955100 6048000 9084600 3954100 5130500 1233400 587390 646040 0 0 0 0 0 0 0 0 0 15405 1378 16038 79577;79578;79579;79580;79581 80765;80766;80767 80766 3 ILIEDWKK QQMAEVTREGFRLKKILIEDWKKAREEKQK EGFRLKKILIEDWKKAREEKQKKLIELQAG K I L K K A 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 0 0 1 0 0 0 0 8 1 1043.6015 K7ELL7;P14314;K7EPW7 K7ELL7 143 150 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0077113 75.854 By MS/MS By MS/MS 1 2 1.5315 1.4314 23.179 3 Median 1.0559 0.97941 NaN 1 0 Median 1.5633 1.461 2.8954 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70562000 31670000 38892000 55619000 25903000 29716000 14942000 5766300 9176100 0 0 0 0 0 0 0 0 0 0 0 0 15406 1378 16039 79582;79583;79584 80768;80769;80770;80771 80768 4 ILIEELR LGLSLSGGDQEDAGRILIEELRDRFPYLSE GDQEDAGRILIEELRDRFPYLSESYLITTD R I L L R D 0 1 0 0 0 0 2 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 884.53312 H7C3G9;Q9UJ70;C9JEV6;H7C1L7;H0YE82;H0YEB7 H7C3G9 86 92 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.037229 58.981 By MS/MS 1 0.32871 0.30691 NaN 1 Median 0.32871 0.30691 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7937400 5650000 2287300 7937400 5650000 2287300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15407 1265 16040 79585 80772 80772 1 ILIENGVAER ______________________________ DNRIRILIENGVAERQRSLFVVVGDRGKDQ R I L E R Q 1 1 1 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1112.619 Q9H0A0;E9PMU0;E9PJN6 Q9H0A0 12 21 NAT10 N-acetyltransferase 10 yes no 2 4.2317E-05 138.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2943 1.1242 8.9277 4 Linear NaN NaN NaN 0 0 Median 1.2576 1.058 NaN 1 1 Median 0.9046 0.91813 NaN 1 0 Median 1.332 1.1303 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4412 1.0762 NaN 1 0 Median 20202000 9249400 10953000 0 0 0 6176600 2646800 3529900 1547200 734730 812470 6319600 2821100 3498500 0 0 0 6158400 3046700 3111700 15408 3921 16041 79586;79587;79588;79589 80773;80774;80775;80776;80777 80775 5 ILIFSSR IPGPVCKGKWKNKERILIFSSRGINFRTRH GKWKNKERILIFSSRGINFRTRHLMQDLRM R I L S R G 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 0 7 0 834.49634 Q8TDN6 Q8TDN6 62 68 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.0083653 86.086 By matching By MS/MS By matching By MS/MS By matching 1 1 1 6 2 1.4783 1.3388 14.903 11 Median 1.5644 1.6016 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1594 1.2565 NaN 1 0 Median 1.6299 1.4023 NaN 1 0 Median 1.3096 1.3436 17.68 6 1 Median 1.5192 1.2383 3.704 2 0 Median 57898000 24764000 33134000 874950 404110 470840 0 0 0 5509400 2530900 2978500 484810 207720 277100 44985000 19232000 25753000 6044200 2389600 3654600 15409 3473 16042 79590;79591;79592;79593;79594;79595;79596;79597;79598;79599;79600 80778;80779;80780;80781;80782;80783;80784;80785;80786;80787 80779 10 ILIIGESGVGK ______________________________ TTLKILIIGESGVGKSSLLLRFTDDTFDPE K I L G K S 0 0 0 0 0 0 1 3 0 3 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1084.6492 Q9NP72;A0A087X163;Q5W0J0 Q9NP72 11 21 RAB18 Ras-related protein Rab-18 yes no 2 0.0048509 47.198 By matching By MS/MS By matching By matching By matching By matching 1 3 1 1 1 1 1.1781 1.0547 36.06 8 Median 1.1682 1.0812 NaN 1 0 Median 1.188 1.0006 11.687 3 0 Median 1.0717 1.0289 NaN 1 0 Median 0.77464 0.63874 NaN 1 0 Median 2.2163 2.3425 NaN 1 0 Median 1.4674 1.21 NaN 1 0 Median 51910000 22412000 29498000 27892000 11956000 15937000 6430100 2762400 3667700 2474800 1119800 1355000 560720 303810 256910 302720 108740 193980 14249000 6162000 8087300 15410 4041 16043 79601;79602;79603;79604;79605;79606;79607;79608 80788;80789 80788 2 ILILGLDGAGK FSSIFSSLFGTREMRILILGLDGAGKTTIL REMRILILGLDGAGKTTILYRLQVGEVVTT R I L G K T 1 0 0 1 0 0 0 3 0 2 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1068.6543 F8VYN9;P40616;F8VP99;F8VP63 F8VYN9 20 30 ARL1 ADP-ribosylation factor-like protein 1 yes no 2 0.0026022 52.579 By matching By MS/MS By MS/MS By matching By MS/MS 4 4 2 1 2 1.1064 1.0114 23.362 13 Median 1.0634 1.002 14.5 4 0 Median 1.1032 0.95689 14.321 4 0 Median 1.342 1.3558 24.162 2 0 Median 1.0693 0.93691 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95693 0.78522 39.722 2 0 Median 22851000 10319000 12533000 8903800 4292600 4611300 8460200 3968200 4492000 4333800 1513900 2820000 114080 57313 56767 0 0 0 1039500 486760 552720 15411 1075 16044 79609;79610;79611;79612;79613;79614;79615;79616;79617;79618;79619;79620;79621 80790;80791;80792;80793 80790 4 ILILQGLK ACEHVFIWDLRKGEKILILQGLKQEVTCLC DLRKGEKILILQGLKQEVTCLCPSPDGLHL K I L L K Q 0 0 0 0 0 1 0 1 0 2 3 1 0 0 0 0 0 0 0 0 0 0 8 0 896.60589 Q9UNX4 Q9UNX4 58 65 WDR3 WD repeat-containing protein 3 yes yes 2 0.008475 62.714 By matching By MS/MS 1 3 1.4809 1.5681 28.705 4 Median NaN NaN NaN 0 0 Median 1.7551 1.6001 NaN 1 0 Median 1.4013 1.5368 33.517 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4545300 1791300 2753900 0 0 0 204110 61239 142870 4341100 1730100 2611000 0 0 0 0 0 0 0 0 0 15412 4351 16045 79622;79623;79624;79625 80794;80795 80794 2 ILINDAYKR PYSEATARLIDDEVRILINDAYKRTVALLT IDDEVRILINDAYKRTVALLTEKKADVEKV R I L K R T 1 1 1 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 9 1 1104.6291 Q9Y4W6 Q9Y4W6 703 711 AFG3L2 AFG3-like protein 2 yes yes 2 0.0014007 86.953 By MS/MS 1 0.77295 0.7924 NaN 1 Median 0.77295 0.7924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3839100 2081900 1757200 3839100 2081900 1757200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15413 4449 16046 79626 80796 80796 1 ILIRPMYSNPPLNGAR CKDADEAKRVESQLKILIRPMYSNPPLNGA LIRPMYSNPPLNGARIAAAILNTPDLRKQW K I L A R I 1 2 2 0 0 0 0 1 0 2 2 0 1 0 3 1 0 0 1 0 0 0 16 1 1810.9876 P00505 P00505 310 325 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2;3 2.0107E-05 77.776 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.80021 0.81494 34.128 6 Median 0.70865 0.74562 3.0645 2 0 Median 0.93331 0.8716 NaN 1 0 Median 0.88422 0.90627 NaN 1 0 Median 1.2141 1.0687 NaN 1 0 Median 0.36959 0.3991 NaN 1 0 Median NaN NaN NaN 0 0 Median 130250000 73410000 56841000 99913000 58178000 41734000 17528000 8713000 8815400 9984800 5063600 4921200 426570 168490 258080 2398400 1286400 1112000 0 0 0 15414 1823 16047 79627;79628;79629;79630;79631;79632 80797;80798;80799;80800;80801;80802;80803;80804 80801 8 ILISLATGHR LEDALSSDTSGHFRRILISLATGHREEGGE GHFRRILISLATGHREEGGENLDQAREDAQ R I L H R E 1 1 0 0 0 0 0 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1079.6451 E5RK69;P08133;E7EMC6 P08133 500 509 ANXA6 Annexin;Annexin A6 no no 2 0.0034408 56.729 By matching By MS/MS 1 1 1.1621 1.0574 20.3 2 Median 0.9568 0.91601 NaN 1 0 Median 1.4114 1.2206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17893000 7910600 9982500 5059000 2290200 2768700 12834000 5620400 7213800 0 0 0 0 0 0 0 0 0 0 0 0 15415 1898;854 16048 79633;79634 80805;80806 80806 2 ILISLATGHREEGGENLDQAR LEDALSSDTSGHFRRILISLATGHREEGGE TGHREEGGENLDQAREDAQVAAEILEIADT R I L A R E 2 2 1 1 0 1 3 3 1 2 3 0 0 0 0 1 1 0 0 0 0 0 21 1 2278.1666 E5RK69;P08133;E7EMC6 P08133 500 520 ANXA6 Annexin;Annexin A6 no no 3;4 3.5307E-26 124.08 By MS/MS By MS/MS 4 2 0.98725 0.99225 16.181 6 Median 0.94567 0.9317 8.1966 4 0 Median 1.3483 1.2245 11.758 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122620000 57316000 65302000 104240000 49153000 55083000 18382000 8163700 10219000 0 0 0 0 0 0 0 0 0 0 0 0 15416 1898;854 16049 79635;79636;79637;79638;79639;79640 80807;80808;80809;80810;80811;80812;80813 80810 7 ILISLRPQELVDVIK LALMESRHDSENAERILISLRPQELVDVIK ILISLRPQELVDVIKKAYLQEEERENSEVS R I L I K K 0 1 0 1 0 1 1 0 0 3 3 1 0 0 1 1 0 0 0 2 0 0 15 1 1735.0608 Q14573 Q14573 2016 2030 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 0.035458 33.057 By MS/MS 2 1.512 1.452 29.496 2 Median NaN NaN NaN 0 0 Median 1.512 1.452 29.496 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2959800 1305600 1654100 0 0 0 2959800 1305600 1654100 0 0 0 0 0 0 0 0 0 0 0 0 15417 2883 16050 79641;79642 80814 80814 1 ILITTSDRPHGR TDEFASYFNKQTSPKILITTSDRPHGRTVR SPKILITTSDRPHGRTVRLCEQLSTVIPNS K I L G R T 0 2 0 1 0 0 0 1 1 2 1 0 0 0 1 1 2 0 0 0 0 0 12 1 1364.7524 Q9H9Y2 Q9H9Y2 144 155 RPF1 Ribosome production factor 1 yes yes 3 4.585E-05 88.441 By MS/MS By MS/MS 2 3 1.1242 1.0075 6.4499 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92053 0.98254 NaN 1 0 Median 1.1597 1.0331 7.3106 3 1 Median 11847000 5345300 6502200 0 0 0 0 0 0 0 0 0 0 0 0 7358700 3433400 3925300 4488800 1911900 2576900 15418 4003 16051 79643;79644;79645;79646;79647 80815;80816;80817;80818;80819;80820 80817 6 ILITTVPPNLR NETGFEISSSDATVKILITTVPPNLRKLDP ATVKILITTVPPNLRKLDPELHLDIKVLQS K I L L R K 0 1 1 0 0 0 0 0 0 2 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1235.7602 B4DY09;Q12905 B4DY09 137 147 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 0.00015191 107.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 8 7 6 16 11 0.82692 0.76142 11.527 52 Median 0.87781 0.88081 21.494 5 1 Median 0.89576 0.78009 11.827 8 0 Median 0.7245 0.75286 11.355 7 0 Median 1.0102 0.84979 6.6787 6 0 Median 0.74954 0.75571 9.8912 15 1 Median 0.90601 0.7436 7.678 11 0 Median 859820000 477840000 381970000 56397000 28205000 28193000 34817000 18206000 16611000 441840000 251610000 190230000 19419000 9498000 9920900 277240000 154890000 122350000 30098000 15430000 14668000 15419 609 16052 79648;79649;79650;79651;79652;79653;79654;79655;79656;79657;79658;79659;79660;79661;79662;79663;79664;79665;79666;79667;79668;79669;79670;79671;79672;79673;79674;79675;79676;79677;79678;79679;79680;79681;79682;79683;79684;79685;79686;79687;79688;79689;79690;79691;79692;79693;79694;79695;79696;79697;79698;79699;79700 80821;80822;80823;80824;80825;80826;80827;80828;80829;80830;80831;80832;80833;80834;80835;80836;80837;80838;80839;80840;80841;80842;80843;80844;80845;80846;80847;80848;80849;80850;80851;80852;80853;80854;80855;80856;80857;80858;80859;80860;80861;80862;80863;80864;80865;80866;80867;80868;80869;80870;80871;80872;80873;80874;80875;80876;80877;80878;80879;80880;80881;80882;80883;80884;80885;80886;80887;80888;80889;80890;80891;80892;80893;80894;80895;80896;80897;80898;80899;80900;80901;80902;80903;80904;80905;80906;80907;80908;80909;80910;80911;80912;80913;80914;80915;80916 80849 96 ILITTVPPNLRK NETGFEISSSDATVKILITTVPPNLRKLDP TVKILITTVPPNLRKLDPELHLDIKVLQSA K I L R K L 0 1 1 0 0 0 0 0 0 2 2 1 0 0 2 0 2 0 0 1 0 0 12 1 1363.8551 B4DY09;Q12905 B4DY09 137 148 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 0.00014646 68.735 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 0.75455 0.78126 15.197 9 Median 0.99412 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78851 0.89858 12.14 3 0 Median NaN NaN NaN 0 0 Median 0.70489 0.74956 7.5111 4 0 Median 0.96974 0.88755 NaN 1 0 Median 87350000 44747000 42603000 3858700 2034700 1823900 0 0 0 35504000 17884000 17620000 0 0 0 46955000 24290000 22666000 1031900 538070 493820 15420 609 16053 79701;79702;79703;79704;79705;79706;79707;79708;79709 80917;80918;80919;80920;80921;80922;80923;80924;80925;80926 80924 9 ILIVGGGVAGLASAGAAK FTGQITAAGKVPPAKILIVGGGVAGLASAG VGGGVAGLASAGAAKSMGAIVRGFDTRAAA K I L A K S 5 0 0 0 0 0 0 5 0 2 2 1 0 0 0 1 0 0 0 2 0 0 18 0 1523.9035 Q13423;E9PCX7;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 230 247 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 1.9914E-12 132.47 By MS/MS By matching By matching 3 1 1 0.78167 0.84509 20.199 5 Median 0.83806 0.82521 8.526 3 0 Plateau 1.3667 1.1974 NaN 1 0 Median 0.78167 0.85893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26068000 12796000 13272000 17704000 9395700 8308600 6734300 2563300 4171000 1629900 837330 792550 0 0 0 0 0 0 0 0 0 15421 2814 16054 79710;79711;79712;79713;79714 80927;80928;80929 80927 3 ILIVTQTPHYMR DEESDYEIDDRDVNKILIVTQTPHYMRRHP VNKILIVTQTPHYMRRHPGGDRTGNHTSRA K I L M R R 0 1 0 0 0 1 0 0 1 2 1 0 1 0 1 0 2 0 1 1 0 0 12 0 1470.8017 Q6PKG0;A0A0B4J210;E5RH50 Q6PKG0 643 654 LARP1 La-related protein 1 yes no 2;3 1.05E-06 112.15 By MS/MS By matching 2 1 1.073 1.0337 8.7768 3 Plateau 1.0644 1.0254 3.472 2 0 Median 0.91941 0.88617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25118000 11960000 13157000 24671000 11736000 12934000 447240 224040 223200 0 0 0 0 0 0 0 0 0 0 0 0 15422 3176 16055 79715;79716;79717 80930;80931;80932 80931 3 ILIWSGR YNRVPLHKPTDWQKKILIWSGRFKKEDEIP KPTDWQKKILIWSGRFKKEDEIPETVSLEM K I L G R F 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 0 7 0 843.49667 Q96A26;F8W7Q4;E9PH05 Q96A26 70 76 FAM162A Protein FAM162A yes no 2 0.0097793 83.377 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 1 2 2 3 1.4298 1.2315 11.384 13 Median 1.2234 1.1882 12.395 3 0 Median 1.555 1.3235 8.3021 2 0 Median 1.1287 1.1446 NaN 1 0 Median 1.6161 1.3436 8.6397 2 0 Median 1.1238 1.152 9.4335 2 0 Median 1.4588 1.2546 11.575 3 0 Median 76242000 31487000 44755000 32601000 14167000 18434000 29425000 11021000 18404000 7133200 3334500 3798700 2453400 996530 1456900 3244600 1412700 1831900 1384300 555500 828820 15423 1085 16056 79718;79719;79720;79721;79722;79723;79724;79725;79726;79727;79728;79729;79730 80933;80934;80935;80936;80937;80938;80939 80933 7 ILKEDILNYLEK NIKLSEVVGSGKDGRILKEDILNYLEKQTG DGRILKEDILNYLEKQTGAILPPSPKVEIM R I L E K Q 0 0 1 1 0 0 2 0 0 2 3 2 0 0 0 0 0 0 1 0 0 0 12 1 1489.8392 P11182;Q5VVL7 P11182 200 211 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 3 0.053081 16.35 By matching By matching By MS/MS 1 1 1 1.1279 1.1798 14.572 3 Median 1.1052 1.078 NaN 1 0 Median 1.5268 1.4337 NaN 1 0 Median 1.1279 1.1798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14157000 5929200 8227400 477280 236740 240550 4304300 1731000 2573300 9375000 3961500 5413600 0 0 0 0 0 0 0 0 0 15424 1955 16057 79731;79732;79733 80940 80940 1 ILKEEQELYQK INYCNEKLQQFFNERILKEEQELYQKEGLG FNERILKEEQELYQKEGLGVNEVHYVDNQD R I L Q K E 0 0 0 0 0 2 3 0 0 1 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1419.7609 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 488 498 MYO6 Unconventional myosin-VI yes no 2;3 4.2707E-05 137.95 By MS/MS By MS/MS By MS/MS By matching 4 3 2 2 1.0368 1.0868 31.266 11 Median 1.0234 1.0738 12.036 4 0 Median 1.611 1.4986 11.781 3 2 Median 0.92863 1.0972 36.513 2 0 Median NaN NaN NaN 0 0 Median 0.61286 0.65663 7.4391 2 0 Median NaN NaN NaN 0 0 Median 55245000 25614000 29632000 22824000 10787000 12037000 18481000 7278300 11203000 4723600 2288800 2434800 0 0 0 9216900 5259500 3957400 0 0 0 15425 164 16058 79734;79735;79736;79737;79738;79739;79740;79741;79742;79743;79744 80941;80942;80943;80944;80945;80946;80947;80948;80949 80948 9 ILKPAEGNPTDQAGFSEDR HHEAGVTALSQDPQRILKPAEGNPTDQAGF AEGNPTDQAGFSEDRDFGYSVGLNPPEEEA R I L D R D 2 1 1 2 0 1 2 2 0 1 1 1 0 1 2 1 1 0 0 0 0 0 19 1 2043.9861 Q86XL3 Q86XL3 137 155 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 yes yes 3 4.4957E-05 41.513 By matching By matching By MS/MS 1 1 1 0.92458 0.97659 32.905 3 Plateau NaN NaN NaN 0 0 Median 0.57804 0.55279 NaN 1 0 Median 0.93279 1.0596 NaN 1 0 Median 0.8675 0.83368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7689100 4165400 3523700 0 0 0 941320 569230 372090 3632700 1969200 1663500 3115100 1626900 1488100 0 0 0 0 0 0 15426 3301 16059 79745;79746;79747 80950 80950 1 ILKPTDENLLK FGLAPGWVVNMADKKILKPTDENLLKYYTS ADKKILKPTDENLLKYYTS___________ K I L L K Y 0 0 1 1 0 0 1 0 0 1 3 2 0 0 1 0 1 0 0 0 0 0 11 1 1282.7497 Q9P015;E5RIZ4 Q9P015 282 292 MRPL15 39S ribosomal protein L15, mitochondrial yes no 3 0.00067434 55.314 By MS/MS By MS/MS By MS/MS 1 1 1 1.2132 1.0931 22.576 3 Median NaN NaN NaN 0 0 Median 1.2132 1.0931 NaN 1 0 Median 0.80191 0.83944 NaN 1 0 Median 1.4982 1.3155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9854200 5074700 4779500 0 0 0 3071900 1232900 1839000 5219400 3136700 2082700 1563000 705120 857830 0 0 0 0 0 0 15427 4197 16060 79748;79749;79750 80951;80952;80953;80954 80951 4 ILKQDFETLSQETK ESIKQKLTKQEEEKKILKQDFETLSQETKI KILKQDFETLSQETKIQHEELNNRIQTTVT K I L T K I 0 0 0 1 0 2 2 0 0 1 2 2 0 1 0 1 2 0 0 0 0 0 14 1 1678.8778 Q15075 Q15075 811 824 EEA1 Early endosome antigen 1 yes yes 2;3 2.9956E-25 154.66 By MS/MS By matching 3 1 0.77499 0.74652 7.3054 4 Median 0.76115 0.72883 8.9472 3 2 Median 0.78907 0.76463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48481000 28132000 20349000 46135000 26688000 19447000 2346200 1443400 902780 0 0 0 0 0 0 0 0 0 0 0 0 15428 2926 16061 79751;79752;79753;79754 80955;80956;80957;80958 80958 4 ILKSPEIQR YNLPMHKMINTDLSRILKSPEIQRALRAPR NTDLSRILKSPEIQRALRAPRKKIHRRVLK R I L Q R A 0 1 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 9 1 1082.6448 P36578;H3BM89 P36578 292 300 RPL4 60S ribosomal protein L4 yes no 2 0.0031817 105.57 By matching By MS/MS By matching 1 1 1 0.97499 0.98998 14.365 3 Median 0.97499 0.98998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95098 0.97841 NaN 1 0 Median 1.3895 1.2619 NaN 1 0 Median 9701400 4530600 5170800 1199700 570790 628940 0 0 0 0 0 0 0 0 0 6302900 3069400 3233500 2198700 890380 1308300 15429 2260 16062 79755;79756;79757 80959 80959 1 ILLAELEQLK ANYIDKVRFLEQQNKILLAELEQLKGQGKS EQQNKILLAELEQLKGQGKSRLGDLYEEEM K I L L K G 1 0 0 0 0 1 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1168.7067 P08670;B0YJC4;A0A1B0GTT5 P08670 130 139 VIM Vimentin yes no 2 0.00036244 112.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 3 5 4 1 1.1984 1.116 20.653 18 Median 0.94788 0.86078 NaN 1 0 Median 1.435 1.2464 14.592 4 0 Median 1.1295 1.1049 7.3529 3 0 Median 1.2335 1.0409 24.703 5 0 Median 1.1984 1.2119 15.347 4 0 Median 0.94237 0.76038 NaN 1 0 Median 1589100000 733170000 855970000 313230000 155270000 157960000 545290000 228100000 317190000 285200000 135650000 149550000 95407000 42638000 52769000 101530000 45559000 55967000 248490000 125950000 122540000 15430 1907 16063 79758;79759;79760;79761;79762;79763;79764;79765;79766;79767;79768;79769;79770;79771;79772;79773;79774;79775 80960;80961;80962;80963;80964;80965;80966;80967;80968;80969;80970;80971;80972;80973 80973 14 ILLAELEQLKGQGK ANYIDKVRFLEQQNKILLAELEQLKGQGKS KILLAELEQLKGQGKSRLGDLYEEEMRELR K I L G K S 1 0 0 0 0 2 2 2 0 1 4 2 0 0 0 0 0 0 0 0 0 0 14 1 1538.9032 P08670;B0YJC4;A0A1B0GTT5 P08670 130 143 VIM Vimentin yes no 2;3 2.1769E-08 156.48 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 6 4 5 5 12 7 1.1993 1.2503 20.972 39 Median 1.031 0.96539 12.58 6 0 Median 1.4147 1.3314 6.7293 4 0 Median 1.1483 1.2503 5.6874 5 0 Median 1.3613 1.293 6.9729 5 0 Median 1.2493 1.3287 17.541 12 0 Median 0.99637 0.87185 19.289 7 0 Median 869080000 397920000 471160000 254750000 122250000 132490000 5311700 2088400 3223300 47366000 23466000 23900000 15192000 6434900 8756600 487600000 214250000 273350000 58861000 29421000 29440000 15431 1907 16064 79776;79777;79778;79779;79780;79781;79782;79783;79784;79785;79786;79787;79788;79789;79790;79791;79792;79793;79794;79795;79796;79797;79798;79799;79800;79801;79802;79803;79804;79805;79806;79807;79808;79809;79810;79811;79812;79813;79814 80974;80975;80976;80977;80978;80979;80980;80981;80982;80983;80984;80985;80986;80987;80988;80989;80990;80991;80992;80993;80994;80995;80996;80997;80998;80999;81000;81001;81002;81003 81003 30 ILLAEVPTMAVEK DMVGIDAAIANAFRRILLAEVPTMAVEKVL RRILLAEVPTMAVEKVLVYNNTSIVQDEIL R I L E K V 2 0 0 0 0 0 2 0 0 1 2 1 1 0 1 0 1 0 0 2 0 0 13 0 1412.7949 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8YEY5;A0A2R8Y8D6;H0Y723;D6RDJ3 O15160 79 91 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 0.00028587 78.342 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 3 1 1 1 0.96246 0.88721 9.0734 8 Median 0.9369 0.86851 NaN 1 0 Median 0.98872 0.84871 NaN 1 0 Median 0.7867 0.84488 8.9624 3 0 Plateau 1.0922 0.92193 NaN 1 0 Median 1.0076 0.9988 NaN 1 0 Median 1.1416 0.95071 NaN 1 0 Median 71997000 39790000 32207000 11994000 7224800 4768900 3873200 1932500 1940700 50072000 27698000 22374000 1459300 732150 727190 3120200 1594300 1525800 1478600 608330 870290 15432 1528 16065;16066 79815;79816;79817;79818;79819;79820;79821;79822 81004;81005;81006;81007;81008;81009 81006 497 6 ILLANFLAQTEALMR PVQTQHPIRKGLHHKILLANFLAQTEALMR ILLANFLAQTEALMRGKSTEEARKELQAAG K I L M R G 3 1 1 0 0 1 1 0 0 1 4 0 1 1 0 0 1 0 0 0 0 0 15 0 1702.944 P06744;A0A2U3TZU2;CON__Q3ZBD7 P06744 424 438 GPI Glucose-6-phosphate isomerase yes no 2;3 0.00036566 59.542 By MS/MS By MS/MS By matching 2 3 1 1.1273 1.0299 5.9789 6 Median 1.1178 1.0793 4.3082 2 0 Median 1.1302 0.97679 2.8632 3 0 Median NaN NaN NaN 0 0 Median 1.2341 1.0907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41799000 19345000 22454000 35979000 16607000 19373000 5731100 2696800 3034300 0 0 0 88394 41641 46753 0 0 0 0 0 0 15433 1875 16067 79823;79824;79825;79826;79827;79828 81010;81011;81012;81013 81010 4 ILLAVNGK SLEQLRQYDGSRNPRILLAVNGKVFDVTKG DGSRNPRILLAVNGKVFDVTKGSKFYGPAG R I L G K V 1 0 1 0 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 826.52764 O15173 O15173 119 126 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 2 0.0032511 99.919 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.1108 1.0397 18.51 7 Median 0.85989 0.81091 15.009 3 0 Median 1.424 1.2239 2.326 2 1 Median 1.0147 0.96858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3672 1.1748 NaN 1 0 Median 13212000 6399000 6813100 8269200 4206200 4062900 2879400 1178900 1700500 1312000 677450 634520 0 0 0 0 0 0 751640 336410 415230 15434 1529 16068 79829;79830;79831;79832;79833;79834;79835 81014;81015;81016;81017 81014 4 ILLDHEK NIDEEMLQKAARETKILLDHEKEWKLGRCI QKAARETKILLDHEKEWKLGRCILRFPEIL K I L E K E 0 0 0 1 0 0 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 866.48617 P54136 P54136 564 570 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.02008 60.76 By MS/MS By matching By matching 1 1 1 1.022 0.89803 18.138 3 Median NaN NaN NaN 0 0 Median 1.0813 0.91948 NaN 1 0 Median 0.62325 0.66415 NaN 1 0 Median 1.022 0.89803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5354500 2732900 2621600 0 0 0 4667300 2363900 2303400 586940 318470 268460 100280 50536 49744 0 0 0 0 0 0 15435 2480 16069 79836;79837;79838 81018;81019 81018 2 ILLDHEKEWK NIDEEMLQKAARETKILLDHEKEWKLGRCI ARETKILLDHEKEWKLGRCILRFPEILQKI K I L W K L 0 0 0 1 0 0 2 0 1 1 2 2 0 0 0 0 0 1 0 0 0 0 10 1 1309.703 P54136 P54136 564 573 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2;3 0.00012932 113.18 By MS/MS By MS/MS 2 1 1.1745 1.1003 9.061 3 Median 1.1215 1.0495 6.6812 2 0 Median 1.2858 1.1999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46582000 21052000 25530000 34140000 15973000 18168000 12442000 5079000 7362600 0 0 0 0 0 0 0 0 0 0 0 0 15436 2480 16070 79839;79840;79841 81020;81021;81022;81023;81024;81025 81021 6 ILLDPNSEEVSEK EDEEEESSRQETEEKILLDPNSEEVSEKDA EKILLDPNSEEVSEKDAKQIIETAKQDVDD K I L E K D 0 0 1 1 0 0 3 0 0 1 2 1 0 0 1 2 0 0 0 1 0 0 13 0 1471.7406 P51531;F6VDE0;A0A0U1RQZ9 P51531 660 672 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00012318 84.17 By matching By MS/MS By MS/MS 1 1 1 0.68913 0.76561 37.316 3 Median 0.41322 0.40228 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68913 0.76561 NaN 1 0 Median 0.85133 0.76989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12363000 7406800 4956600 2841600 2086500 755100 0 0 0 6973700 4076400 2897300 2548100 1243900 1304200 0 0 0 0 0 0 15437 2433 16071 79842;79843;79844 81026;81027;81028 81028 3 ILLDPNSEEVSEKDAK EDEEEESSRQETEEKILLDPNSEEVSEKDA LLDPNSEEVSEKDAKQIIETAKQDVDDEYS K I L A K Q 1 0 1 2 0 0 3 0 0 1 2 2 0 0 1 2 0 0 0 1 0 0 16 1 1785.8996 P51531;F6VDE0;A0A0U1RQZ9 P51531 660 675 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 4.65E-05 57.52 By MS/MS By MS/MS 1 1 1.0499 1.0971 27.219 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77869 0.90506 NaN 1 1 Median 1.4154 1.33 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40040000 19020000 21020000 0 0 0 0 0 0 36997000 17821000 19176000 3043200 1199300 1843900 0 0 0 0 0 0 15438 2433 16072 79845;79846 81029;81030;81031 81031 3 ILLEELANSDPK PTGIEDEDALIADVKILLEELANSDPKLAL DVKILLEELANSDPKLALTGVPIVQWPKRD K I L P K L 1 0 1 1 0 0 2 0 0 1 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1340.7187 I3VM54;Q9Y2K7 I3VM54 477 488 KDM2A Lysine-specific demethylase 2A yes no 2 0.001379 53.683 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.79937 0.82663 39.945 5 Median NaN NaN NaN 0 0 Median 1.1082 1.0063 NaN 1 0 Median 0.59131 0.6373 NaN 1 0 Median 1.0142 0.99082 NaN 1 0 Median 0.79937 0.82663 NaN 1 0 Median 0.45058 0.38537 NaN 1 0 Median 13190000 7595000 5594600 0 0 0 1180200 558760 621400 6317800 3730100 2587800 874730 396340 478400 4553700 2728300 1825500 263160 181610 81556 15439 1296 16073 79847;79848;79849;79850;79851 81032;81033 81032 2 ILLELLNQMDGFDQNVNVK KRFDAQTGADREVQRILLELLNQMDGFDQN LLNQMDGFDQNVNVKVIMATNRADTLDPAL R I L V K V 0 0 3 2 0 2 1 1 0 1 4 1 1 1 0 0 0 0 0 2 0 0 19 0 2202.1355 P43686 P43686 288 306 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.0007068 36.847 By MS/MS 2 1.0065 0.86632 9.5861 2 Median NaN NaN NaN 0 0 Median 1.0065 0.86632 9.5861 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937600 1826300 2111300 0 0 0 3937600 1826300 2111300 0 0 0 0 0 0 0 0 0 0 0 0 15440 2327 16074 79852;79853 81034;81035;81036 81036 3 ILLGGYQSR TTEAKRAAKMEKKMKILLGGYQSRAMGLMK MEKKMKILLGGYQSRAMGLMKQLNDLWDQI K I L S R A 0 1 0 0 0 1 0 2 0 1 2 0 0 0 0 1 0 0 1 0 0 0 9 0 1005.5607 Q99459 Q99459 719 727 CDC5L Cell division cycle 5-like protein yes yes 2 0.00046727 117.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 1 1.1042 1.0781 70.107 9 Median 1.1585 1.1202 NaN 1 1 Median 1.027 0.88764 NaN 1 1 Median 0.6887 0.70338 60.4 2 1 Median 1.3573 1.154 120.84 3 1 Median 1.1042 1.1194 NaN 1 1 Median 1.274 1.0334 NaN 1 0 Median 144710000 95470000 49245000 5407100 2271000 3136000 9827600 5435600 4392100 50273000 27606000 22667000 60564000 50736000 9827600 15313000 7927600 7385100 3329900 1492800 1837100 15441 3745 16075 79854;79855;79856;79857;79858;79859;79860;79861;79862;79863 81037;81038;81039;81040;81041;81042;81043;81044;81045;81046;81047;81048;81049 81042 13 ILLGSEQGSLQLWNVK FKISAILHPSTYLNKILLGSEQGSLQLWNV LLGSEQGSLQLWNVKSNKLLYTFPGWKVGV K I L V K S 0 0 1 0 0 2 1 2 0 1 4 1 0 0 0 2 0 1 0 1 0 0 16 0 1783.9832 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 164 179 WDR36 WD repeat-containing protein 36 yes no 2 0.062153 32.606 By MS/MS 1 1.0564 1.1572 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0564 1.1572 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3003500 1371200 1632300 0 0 0 0 0 0 3003500 1371200 1632300 0 0 0 0 0 0 0 0 0 15442 188 16076 79864 81050 81050 1 ILLHHAANSVK LVSKISFTGSTTTGKILLHHAANSVKRVSM TTGKILLHHAANSVKRVSMELGGLAPFIVF K I L V K R 2 0 1 0 0 0 0 0 2 1 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1201.6931 P51649;C9J8Q5 P51649 291 301 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 2;3 0.007754 32.008 By MS/MS By MS/MS By matching 2 2 2 1.0461 1.0619 14.185 6 Median 1.0431 1.0268 0.77842 2 0 Median 1.5822 1.3629 3.6274 2 0 Median 1.011 1.0571 4.6217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7380400 2883800 4496600 1751300 818290 933010 4893900 1682200 3211800 735170 383310 351860 0 0 0 0 0 0 0 0 0 15443 2439 16077 79865;79866;79867;79868;79869;79870 81051;81052;81053 81051 3 ILLIFEGTNEILR YTRDYPYERILRDTRILLIFEGTNEILRMY TRILLIFEGTNEILRMYIALTGLQHAGRIL R I L L R M 0 1 1 0 0 0 2 1 0 3 3 0 0 1 0 0 1 0 0 0 0 0 13 0 1529.8817 Q9H845;H0Y8Z9 Q9H845 421 433 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 5.0294E-05 88.417 By MS/MS By MS/MS By matching 1 2 1 1.4662 1.2794 58.062 4 Median 0.97134 0.98566 NaN 1 0 Median 1.4662 1.2794 3.7692 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.095 3.6456 NaN 1 0 Median NaN NaN NaN 0 0 Median 7704000 3073900 4630200 1191900 640840 551080 5632600 2243800 3388800 0 0 0 0 0 0 879490 189190 690300 0 0 0 15444 3988 16078 79871;79872;79873;79874 81054;81055;81056 81056 3 ILLITEDLK DFPEDADIDLKDVDKILLITEDLKNIGNTF LKDVDKILLITEDLKNIGNTFFKSQNWEMA K I L L K N 0 0 0 1 0 0 1 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1056.6431 Q08752 Q08752 219 227 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 2 0.0025104 71.501 By MS/MS By MS/MS By matching 1 1 2 1.4254 1.5049 16.281 4 Linear 1.4514 1.3643 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3998 1.4856 NaN 1 0 Median 1.3323 1.154 17.831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9237600 3708700 5528900 2782100 1147900 1634100 0 0 0 4709400 1854500 2854900 1746100 706230 1039900 0 0 0 0 0 0 15445 2742 16079 79875;79876;79877;79878 81057;81058;81059;81060 81059 4 ILLLGEAQVGK ______________________________ RDVRILLLGEAQVGKTSLILSLVGEEFPEE R I L G K T 1 0 0 0 0 1 1 2 0 1 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1139.6914 Q8IXI1;H3BMP9;H3BVI5;H3BUX4;H3BST5;I3L2C6 Q8IXI1 7 17 RHOT2 Mitochondrial Rho GTPase 2 yes no 2 0.00058837 66.621 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.2521 1.092 9.705 7 Median 1.0619 1.0151 10.334 2 0 Median 1.3604 1.1628 6.7692 2 0 Median 1.0043 1.0739 NaN 1 0 Median 1.4463 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2521 1.0688 NaN 1 0 Median 22465000 10572000 11892000 14438000 7291600 7146300 7074800 2835000 4239800 761940 371420 390520 97515 36277 61238 0 0 0 92632 38053 54579 15446 3333 16080 79879;79880;79881;79882;79883;79884;79885 81061;81062;81063;81064 81063 4 ILLLGLDNAGK SILRKLKSAPDQEVRILLLGLDNAGKTTLL QEVRILLLGLDNAGKTTLLKQLASEDISHI R I L G K T 1 0 1 1 0 0 0 2 0 1 4 1 0 0 0 0 0 0 0 0 0 0 11 0 1125.6758 P36405 P36405 20 30 ARL3 ADP-ribosylation factor-like protein 3 yes yes 2 2.7222E-06 107.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.1144 0.99259 39.633 6 Median 0.91897 0.88793 14.746 2 0 Median 1.218 1.0436 6.0774 2 1 Median 0.89431 0.83826 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0807 2.3698 NaN 1 0 Median NaN NaN NaN 0 0 Median 62716000 28042000 34674000 39842000 18453000 21389000 5611000 2349200 3261800 14722000 6413400 8308200 0 0 0 2541300 825750 1715500 0 0 0 15447 2255 16081 79886;79887;79888;79889;79890;79891;79892 81065;81066;81067;81068;81069;81070;81071 81068 7 ILLNAGAEINSR PLSLAASGGYVNIIKILLNAGAEINSRTGS IIKILLNAGAEINSRTGSKLGISPLMLAAM K I L S R T 2 1 2 0 0 0 1 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1269.7041 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1085 1096 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 4.28E-06 104.52 By MS/MS By MS/MS By matching 3 1 1 1.118 1.0389 49.269 5 Plateau 1.2159 1.1412 64.888 3 0 Plateau 1.1114 0.94959 NaN 1 0 Median 0.99478 1.1053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27496000 12709000 14787000 20634000 9545600 11089000 4348600 2049400 2299100 2513700 1114100 1399500 0 0 0 0 0 0 0 0 0 15448 1197;3329 16082 79893;79894;79895;79896;79897 81072;81073;81074;81075 81072 4 ILLPDTNLMLLPAK IREKKQEFCEKNYGKILLPDTNLMLLPAKS KILLPDTNLMLLPAKSLCYNDCPWIKVKDT K I L A K S 1 0 1 1 0 0 0 0 0 1 5 1 1 0 2 0 1 0 0 0 0 0 14 0 1550.9106 Q9NZJ4 Q9NZJ4 2451 2464 SACS Sacsin yes yes 2 0.0081231 35.511 By MS/MS By matching By matching 1 1 1 0.67292 0.73297 46.402 3 Median 0.7392 0.73297 NaN 1 0 Median 0.37454 0.32892 NaN 1 0 Median 0.67292 0.7365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4529800 1959500 2570300 2799300 1013400 1785900 1413900 759330 654600 316560 186780 129780 0 0 0 0 0 0 0 0 0 15449 4189 16083 79898;79899;79900 81076 81076 1 ILLQSKNAGAVIGK AFKRSRNTDEMVELRILLQSKNAGAVIGKG RILLQSKNAGAVIGKGGKNIKALRTDYNAS R I L G K G 2 0 1 0 0 1 0 2 0 2 2 2 0 0 0 1 0 0 0 1 0 0 14 1 1410.8558 P61978;S4R457;Q5T6W2 P61978 47 60 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 2.2422E-07 104.22 By MS/MS By MS/MS By matching 2 2 1 1.0946 1.1294 15.232 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94119 0.98478 14.643 2 0 Median 1.238 1.2375 12.926 2 0 Median 1.0946 1.1673 NaN 1 0 Median NaN NaN NaN 0 0 Median 24230000 11201000 13029000 0 0 0 0 0 0 12879000 6476600 6402800 8434200 3261100 5173000 2916500 1463700 1452800 0 0 0 15450 2565;3093 16084 79901;79902;79903;79904;79905 81077;81078;81079;81080 81080 4 ILLQTIK QFGDDPKEEVMVLERILLQTIKFDLQVEHP EEVMVLERILLQTIKFDLQVEHPYQFLLKY R I L I K F 0 0 0 0 0 1 0 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 7 0 827.54804 O75909;G3V2Q3;G3V5E1 O75909 146 152 CCNK Cyclin-K yes no 2 0.038095 46.016 By matching By MS/MS By matching 1 1 1 1.2018 1.2333 9.1118 3 Plateau NaN NaN NaN 0 0 Median 1.2907 1.1154 NaN 1 0 Median 1.181 1.2385 NaN 1 0 Median 1.2018 1.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8063500 3957000 4106500 0 0 0 1858600 787680 1070900 5563900 2889000 2675000 640930 280280 360650 0 0 0 0 0 0 15451 1704 16085 79906;79907;79908 81081 81081 1 ILLSHFNWDKEK REVNEVIQNPATITRILLSHFNWDKEKLME ITRILLSHFNWDKEKLMERYFDGNLEKLFA R I L E K L 0 0 1 1 0 0 1 0 1 1 2 2 0 1 0 1 0 1 0 0 0 0 12 1 1528.8038 Q9Y4X5;H3BSK4;H3BNB9 Q9Y4X5 133 144 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes no 3 0.0061383 48.659 By MS/MS By MS/MS 1 1 1.1662 1.1574 15.645 2 Median 1.3759 1.2928 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.98846 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13668000 5539500 8128200 9952900 3818000 6134900 0 0 0 3714800 1721500 1993300 0 0 0 0 0 0 0 0 0 15452 4450 16086 79909;79910 81082;81083 81082 2 ILLTEPPMNPTK TFGPEKLNIDTRNCKILLTEPPMNPTKNRE NCKILLTEPPMNPTKNREKIVEVMFETYQF K I L T K N 0 0 1 0 0 0 1 0 0 1 2 1 1 0 3 0 2 0 0 0 0 0 12 0 1352.7374 P61160;F5H6T1 P61160 107 118 ACTR2 Actin-related protein 2 yes no 2 3.3934E-06 121.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 0.74657 0.68165 26.002 8 Median 0.70289 0.64666 0.0083113 2 0 Median 1.0234 0.8722 NaN 1 0 Median 0.62763 0.64735 9.4971 2 0 Median 0.83224 0.70749 7.4575 2 0 Median 1.1896 1.3459 NaN 1 0 Median NaN NaN NaN 0 0 Median 214870000 121300000 93572000 94852000 54088000 40764000 11999000 5676600 6322900 89335000 52742000 36593000 13659000 7201900 6456900 5022600 1586900 3435800 0 0 0 15453 2546 16087;16088 79911;79912;79913;79914;79915;79916;79917;79918 81084;81085;81086;81087;81088;81089;81090;81091;81092;81093;81094 81091 1223 11 ILLTLGIR DANWCGYLHRRDLERILLTLGIRLSAEQAK HRRDLERILLTLGIRLSAEQAKQLVSRVVT R I L I R L 0 1 0 0 0 0 0 1 0 2 3 0 0 0 0 0 1 0 0 0 0 0 8 0 897.60114 Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163 728 735 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.0094539 60.788 By MS/MS By matching By MS/MS By matching By matching By matching 1 2 2 1 1 2 1.2117 1.0621 15.042 9 Median 1.102 1.0839 NaN 1 0 Median 1.3733 1.1909 16.189 2 0 Median 0.88697 0.96176 10.765 2 0 Median 1.1053 0.9532 NaN 1 0 Median 1.353 1.42 NaN 1 0 Median 1.2135 1.0326 5.2247 2 0 Median 15182000 7211800 7970600 2337500 1201700 1135700 6693400 3040800 3652600 4883600 2476900 2406700 478830 197290 281540 353460 126670 226790 435620 168410 267210 15454 3354 16089 79919;79920;79921;79922;79923;79924;79925;79926;79927 81095;81096;81097;81098 81095 4 ILLTNIR HLYAGADVHRHLDVRILLTNIRTKSTFLPP VHRHLDVRILLTNIRTKSTFLPPLPTSVQN R I L I R T 0 1 1 0 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 7 0 841.53854 Q13057;K7EN91;K7ESK6;K7ES73 Q13057 85 91 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.011827 79.454 By MS/MS 1 1.5641 1.2891 NaN 1 Median NaN NaN NaN 0 0 Median 1.5641 1.2891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45846000 17802000 28043000 0 0 0 45846000 17802000 28043000 0 0 0 0 0 0 0 0 0 0 0 0 15455 2783 16090 79928 81099;81100 81100 2 ILLTPPEHLER AVILGQGNVALDVARILLTPPEHLERTDIT DVARILLTPPEHLERTDITKAALGVLRQSR R I L E R T 0 1 0 0 0 0 2 0 1 1 3 0 0 0 2 0 1 0 0 0 0 0 11 0 1316.7452 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0A0MT64;J3QQX3;J3QKZ8 P22570 194 204 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 4.165E-05 104.79 By MS/MS By MS/MS 1 2 1.5885 1.3664 41.075 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69775 0.6809 NaN 1 0 Median 1.604 1.3863 2.0504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52872000 26958000 25913000 0 0 0 0 0 0 29653000 17690000 11963000 23219000 9268400 13950000 0 0 0 0 0 0 15456 2102 16091 79929;79930;79931 81101;81102;81103;81104;81105;81106;81107;81108 81105 8 ILLTQENPFFR FINSRIITVSMEDVKILLTQENPFFRKLSS EDVKILLTQENPFFRKLSSETYSQAKDLAK K I L F R K 0 1 1 0 0 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 11 0 1376.7452 Q08J23 Q08J23 629 639 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 6.2038E-08 132.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1 1.1756 1.0973 56.629 8 Median 1.0217 0.97026 2.5927 2 1 Median 1.2723 1.0973 5.3665 2 1 Median 1.0838 1.1616 NaN 1 0 Median 2.5933 2.2067 119.85 2 1 Median 1.2522 1.2213 NaN 1 0 Median NaN NaN NaN 0 0 Median 44396000 20392000 24004000 18153000 9381200 8771500 17732000 8230100 9501500 3769000 1866800 1902200 3601000 402490 3198500 1141600 511520 630070 0 0 0 15457 2745 16092 79932;79933;79934;79935;79936;79937;79938;79939;79940 81109;81110;81111;81112;81113;81114;81115;81116;81117;81118;81119 81110 11 ILLVDSPGMGNADDEQQEEGTSSK TPSEALWKPTHEDSKILLVDSPGMGNADDE GNADDEQQEEGTSSKQVVKQGLQERSKEGD K I L S K Q 1 0 1 3 0 2 3 3 0 1 2 1 1 0 1 3 1 0 0 1 0 0 24 0 2519.1333 Q9UKN8 Q9UKN8 606 629 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 3.0712E-18 78.413 By MS/MS By matching 1 1 0.90435 0.89099 10.141 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75783 0.82933 NaN 1 0 Median 1.0792 0.95723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8694600 4820900 3873700 0 0 0 0 0 0 8449300 4707700 3741600 245340 113250 132090 0 0 0 0 0 0 15458 4314 16093 79941;79942 81120 81120 1 ILLWDTR PHKDSVFLSCSEDNRILLWDTRCPKPASQI LSCSEDNRILLWDTRCPKPASQIGCSAPGY R I L T R C 0 1 0 1 0 0 0 0 0 1 2 0 0 0 0 0 1 1 0 0 0 0 7 0 915.5178 Q9BQA1;H0Y711 Q9BQA1 192 198 WDR77 Methylosome protein 50 yes no 2 0.0054124 97.068 By MS/MS By matching By matching 1 2 1 1.241 1.075 25.809 4 Median 1.3879 1.3767 NaN 1 0 Median 1.0671 0.9304 30.793 2 0 Median NaN NaN NaN 0 0 Median 1.1711 0.99903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7507000 3184900 4322100 6569500 2773600 3795800 876740 386450 490290 0 0 0 60780 24824 35956 0 0 0 0 0 0 15459 3787 16094 79943;79944;79945;79946 81121;81122 81122 2 ILLYISQQQPVTVAR FGAAVLGNHTAREYRILLYISQQQPVTVAR ILLYISQQQPVTVARIHVNFELMVRPNNYS R I L A R I 1 1 0 0 0 3 0 0 0 2 2 0 0 0 1 1 1 0 1 2 0 0 15 0 1727.9934 Q5T1M5 Q5T1M5 111 125 FKBP15 FK506-binding protein 15 yes yes 2 3.3831E-09 98.353 By MS/MS 1 0.84293 0.83258 NaN 1 Median 0.84293 0.83258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2867200 1596900 1270200 2867200 1596900 1270200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15460 3079 16095 79947 81123;81124 81124 2 ILLYTMNPNK PEFYREYVAIKTKKRILLYTMNPNKFRACQ KTKKRILLYTMNPNKFRACQFLIKFHERRN R I L N K F 0 0 2 0 0 0 0 0 0 1 2 1 1 0 1 0 1 0 1 0 0 0 10 0 1205.6478 A0A2R8Y6W8;P19447;A0A2R8Y681 A0A2R8Y6W8 556 565 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.00037295 87.616 By MS/MS By matching 1 1 1.179 1.1529 5.8129 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.006 1.1065 NaN 1 0 Median 1.3818 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4299900 2081400 2218500 0 0 0 0 0 0 3687500 1794700 1892800 612440 286700 325740 0 0 0 0 0 0 15461 378 16096 79948;79949 81125;81126 81125 2 ILMADADGATK GGAIRMGIFSSRGEKILMADADGATKFPDV RGEKILMADADGATKFPDVEKLEKGLNDLQ K I L T K F 3 0 0 2 0 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 11 0 1104.5485 Q9Y673 Q9Y673 159 169 ALG5 Dolichyl-phosphate beta-glucosyltransferase yes yes 2 0.022562 52.49 By MS/MS 1 1.0588 0.89399 NaN 1 Median NaN NaN NaN 0 0 Median 1.0588 0.89399 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579200 613390 965760 0 0 0 1579200 613390 965760 0 0 0 0 0 0 0 0 0 0 0 0 15462 4479 16097 79950 81127 81127 1 ILMAIDSELVDR SVVDLNPRGVDLYLRILMAIDSELVDRDVV YLRILMAIDSELVDRDVVHTSEEARRNTLI R I L D R D 1 1 0 2 0 0 1 0 0 2 2 0 1 0 0 1 0 0 0 1 0 0 12 0 1373.7225 O43592;F8WDU6 O43592 145 156 XPOT Exportin-T yes no 2 4.6895E-06 102.61 By MS/MS 1 1.1694 1.0112 NaN 1 Median NaN NaN NaN 0 0 Median 1.1694 1.0112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6203500 2811100 3392500 0 0 0 6203500 2811100 3392500 0 0 0 0 0 0 0 0 0 0 0 0 15463 1576 16098 79951 81128;81129 81129 2 ILMAINGK TPAELRRFDGVQDPRILMAINGKVFDVTKG DGVQDPRILMAINGKVFDVTKGRKFYGPEG R I L G K V 1 0 1 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 858.49971 O00264 O00264 89 96 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.0023516 114.54 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.3469 1.187 24.423 6 Median 1.131 1.0695 9.2955 2 0 Median 1.5885 1.3508 12.834 2 0 Median 0.98569 0.98725 NaN 1 0 Median 2.07 1.8573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46152000 19372000 26780000 28470000 12556000 15914000 8833200 3331400 5501700 2202800 973180 1229600 6645700 2511200 4134500 0 0 0 0 0 0 15464 1451 16099 79952;79953;79954;79955;79956;79957 81130;81131;81132;81133 81130 4 ILMDKPEMNVVLK ITISTSEDPNQAKLKILMDKPEMNVVLKNV LKILMDKPEMNVVLKNVKPDQWVKLNLGTV K I L L K N 0 0 1 1 0 0 1 0 0 1 2 2 2 0 1 0 0 0 0 2 0 0 13 1 1528.8357 E9PLK3;P55786 E9PLK3 555 567 NPEPPS Puromycin-sensitive aminopeptidase yes no 2;3 0.0014332 56.043 By MS/MS By matching 2 3 0.94398 0.93989 4.8326 5 Median 0.91414 0.95249 2.7977 2 0 Median 0.9722 0.93989 6.4883 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64318000 33358000 30960000 56915000 29398000 27517000 7403300 3960600 3442700 0 0 0 0 0 0 0 0 0 0 0 0 15465 960 16100 79958;79959;79960;79961;79962 81134;81135;81136;81137 81137 4 ILMEFNK RLFYHIVDSDEVSTKILMEFNKMNLPGEVT DSDEVSTKILMEFNKMNLPGEVTFLPLNKL K I L N K M 0 0 1 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 7 0 893.46807 Q9UQE7 Q9UQE7 572 578 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0081656 86.512 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 2 1.1764 1.0363 9.2954 8 Median NaN NaN NaN 0 0 Median 1.3681 1.1778 NaN 1 0 Median 0.86295 0.92056 NaN 1 0 Median 1.1764 1.0291 8.1499 2 0 Median 0.94651 0.97944 0.8136 2 1 Median 1.3431 1.13 4.8154 2 0 Median 59011000 29412000 29599000 0 0 0 3917700 1577000 2340700 17101000 9014000 8087000 2582400 1181300 1401100 32308000 16321000 15987000 3101700 1318800 1782900 15466 4362 16101 79963;79964;79965;79966;79967;79968;79969;79970;79971 81138;81139;81140;81141;81142;81143;81144;81145;81146;81147 81141 10 ILMEHIHK SLYLKVKGNVFKNKRILMEHIHKLKADKAR NVFKNKRILMEHIHKLKADKARKKLLADQA R I L H K L 0 0 0 0 0 0 1 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 1019.5586 J3QR09;J3KTE4;P84098 J3QR09 134 141 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.0035575 88.942 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 1 2 2 2 1.2266 1.0816 11.466 13 Median 1.1732 1.0816 5.0526 3 0 Median 1.267 1.0556 20.361 3 0 Median 1.2266 1.1497 NaN 1 0 Median 1.2252 1.0703 2.3886 2 0 Median 1.0714 1.0761 16.022 2 0 Median 1.3276 1.0982 9.9771 2 0 Median 165150000 74896000 90256000 92437000 42976000 49461000 26039000 11238000 14801000 14326000 6625200 7700600 1301600 576860 724770 21691000 9782500 11909000 9357800 3697800 5660000 15467 1335 16102 79972;79973;79974;79975;79976;79977;79978;79979;79980;79981;79982;79983;79984 81148;81149;81150;81151;81152;81153;81154;81155 81153 8 ILMGNEELTR RTAPEDFLGKGPTKKILMGNEELTRLWNLC GPTKKILMGNEELTRLWNLCPDNMEACKSE K I L T R L 0 1 1 0 0 0 2 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1174.6016 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 431 440 THOC1 THO complex subunit 1 yes no 2 0.00066973 96.331 By MS/MS By MS/MS 3 1 1.0662 1.0655 5.9696 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.046 1.0527 1.7121 2 1 Median 1.1039 0.95134 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103650000 47241000 56408000 0 0 0 0 0 0 98846000 45080000 53766000 4802700 2160400 2642300 0 0 0 0 0 0 15468 62 16103;16104 79985;79986;79987;79988 81156;81157;81158;81159 81156 25 4 ILMKDIDILNSAGK IYVGLSKMQREWYTRILMKDIDILNSAGKM RILMKDIDILNSAGKMDKMRLLNILMQLRK R I L G K M 1 0 1 2 0 0 0 1 0 3 2 2 1 0 0 1 0 0 0 0 0 0 14 1 1529.8487 O60264 O60264 427 440 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 0.071862 23.934 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15469 1608 16105 79989 81160 81160 1 ILMLGLDAAGK MGKVLSKIFGNKEMRILMLGLDAAGKTTIL KEMRILMLGLDAAGKTTILYKLKLGQSVTT R I L G K T 2 0 0 1 0 0 0 2 0 1 3 1 1 0 0 0 0 0 0 0 0 0 11 0 1100.6264 P62330 P62330 16 26 ARF6 ADP-ribosylation factor 6 yes yes 2 0.0083164 40.724 By MS/MS By matching By matching 1 1 2 1.1684 1.1108 15.502 4 Median 0.93562 0.88148 NaN 1 0 Median 1.3618 1.1853 NaN 1 0 Median 1.1684 1.1397 12.809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28375000 13743000 14633000 20355000 10366000 9989200 983740 402050 581690 7036000 2974300 4061700 0 0 0 0 0 0 0 0 0 15470 2588 16106 79990;79991;79992;79993 81161 81161 1 ILMSKPVLSGGTGR QEKVKLNFDMTASPKILMSKPVLSGGTGRR KILMSKPVLSGGTGRRISLSDMPRSPMSTN K I L G R R 0 1 0 0 0 0 0 3 0 1 2 1 1 0 1 2 1 0 0 1 0 0 14 1 1414.7966 Q9ULU4 Q9ULU4 409 422 ZMYND8 Protein kinase C-binding protein 1 no no 3 8.1531E-05 75.589 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.86084 0.86083 32.02 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93628 1.0614 NaN 1 0 Median 1.2734 1.2293 NaN 1 0 Median 0.56034 0.63401 NaN 1 0 Median 0.79148 0.69817 NaN 1 0 Median 19243000 10576000 8667700 0 0 0 0 0 0 13725000 7254500 6470000 1832000 1006700 825340 3319200 2151100 1168100 367590 163310 204280 15471 4328 16107 79994;79995;79996;79997 81162;81163;81164 81163 3 ILMTYSVQDHMETR TSEEKLQILTALCHRILMTYSVQDHMETRQ RILMTYSVQDHMETRQQMSAELWKERLAVL R I L T R Q 0 1 0 1 0 1 1 0 1 1 1 0 2 0 0 1 2 0 1 1 0 0 14 0 1722.8069 Q9UIG0 Q9UIG0 756 769 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 3.965E-08 105.2 By MS/MS By MS/MS 1 2 1.3202 1.4142 19.029 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3202 1.4674 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1743 1.2114 21.892 2 0 Median NaN NaN NaN 0 0 Median 21082000 9813500 11269000 0 0 0 0 0 0 2734000 1045500 1688600 0 0 0 18348000 8768000 9580200 0 0 0 15472 4290 16108 79998;79999;80000 81165;81166;81167;81168 81167 4 ILMVGLDAAGK FANLFKGLFGKKEMRILMVGLDAAGKTTIL KEMRILMVGLDAAGKTTILYKLKLGEIVTT R I L G K T 2 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 0 0 0 1 0 0 11 0 1086.6107 P18085;C9JPM4;P84077;P61204;F5H423;F5H0C7;F5H1V1;F5H6T5;F8WDB3;P84085;C9J1Z8 P84077 20 30 ARF4;ARF1;ARF3;ARF5 ADP-ribosylation factor 4;ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 no no 2 0.00016774 80.231 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 2 3 2 3 3 1.1872 1.0363 37.959 20 Median 1.0754 0.9925 16.24 7 2 Median 1.2729 1.0847 4.1582 2 0 Median 1.1902 1.1168 2.416 3 0 Median 1.1685 0.96845 1.875 2 0 Median 2.3686 2.6533 10.823 3 0 Median 1.2595 1.0054 7.5934 3 0 Median 996050000 459490000 536570000 743730000 350260000 393470000 90098000 39920000 50178000 108350000 48772000 59579000 9424400 4146100 5278300 17694000 4926400 12768000 26759000 11463000 15296000 15473 2549;2665;2055 16109;16110 80001;80002;80003;80004;80005;80006;80007;80008;80009;80010;80011;80012;80013;80014;80015;80016;80017;80018;80019;80020 81169;81170;81171;81172;81173;81174;81175;81176;81177;81178;81179;81180;81181;81182;81183;81184;81185;81186;81187;81188;81189;81190 81182 817 22 ILNAHMDSLQWIDQNSALLQR GAPADTSDPLQQICKILNAHMDSLQWIDQN DSLQWIDQNSALLQRKVEEVTKVCEGRRKE K I L Q R K 2 1 2 2 0 3 0 0 1 2 4 0 1 0 0 2 0 1 0 0 0 0 21 0 2465.2485 P37198;M0QXN5 P37198 477 497 NUP62 Nuclear pore glycoprotein p62 yes no 3 8.2676E-29 159.26 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 5 3 3 1 1.1756 1.0807 21.101 14 Median 0.94592 0.90142 NaN 1 0 Median 1.2038 1.0438 NaN 1 0 Median 0.94338 0.93698 32.759 5 1 Median 1.4931 1.3126 9.9125 3 0 Median 1.1421 1.1497 13.925 3 2 Median 1.2114 1.0501 NaN 1 0 Median 101670000 54271000 47399000 10322000 4514600 5807300 2716300 1227700 1488600 75770000 42389000 33380000 1901400 737760 1163700 10441000 5173900 5267200 519250 227430 291820 15474 2267 16111;16112 80021;80022;80023;80024;80025;80026;80027;80028;80029;80030;80031;80032;80033;80034 81191;81192;81193;81194;81195;81196;81197;81198;81199;81200;81201;81202;81203 81194 1013 13 ILNDDTALK DAFPVAGQKLIYAGKILNDDTALKEYKIDE LIYAGKILNDDTALKEYKIDEKNFVVVMVT K I L L K E 1 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1001.5393 P54727;Q5W0S5;Q5W0S4 P54727 52 60 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.00050769 119.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 3 1 1.0317 0.99306 34.67 9 Median 0.99218 0.92735 NaN 1 0 Median 1.1728 0.99306 63.81 3 1 Median 1.0317 1.0279 NaN 1 0 Median 1.2472 1.0846 17.613 3 0 Median NaN NaN NaN 0 0 Median 0.88952 0.76214 NaN 1 0 Median 46602000 23205000 23397000 8094400 4004000 4090400 23381000 12093000 11288000 6045000 3085300 2959800 5967200 2052500 3914700 0 0 0 3113900 1969900 1143900 15475 2486 16113 80035;80036;80037;80038;80039;80040;80041;80042;80043 81204;81205;81206;81207;81208;81209;81210;81211 81209 8 ILNDDTALKEYK DAFPVAGQKLIYAGKILNDDTALKEYKIDE AGKILNDDTALKEYKIDEKNFVVVMVTKPK K I L Y K I 1 0 1 2 0 0 1 0 0 1 2 2 0 0 0 0 1 0 1 0 0 0 12 1 1421.7402 P54727;Q5W0S5;Q5W0S4 P54727 52 63 RAD23B UV excision repair protein RAD23 homolog B yes no 2;3 1.6056E-05 121.83 By MS/MS By MS/MS By matching 2 1 1 0.9419 0.89766 3.5324 3 Median 0.96759 0.92228 3.8258 2 0 Median NaN NaN NaN 0 0 Median 0.84641 0.8867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37123000 19114000 18009000 32691000 16912000 15778000 0 0 0 4432200 2201400 2230800 0 0 0 0 0 0 0 0 0 15476 2486 16114 80044;80045;80046;80047 81212;81213;81214;81215 81213 4 ILNDDTALKEYKIDEK DAFPVAGQKLIYAGKILNDDTALKEYKIDE LNDDTALKEYKIDEKNFVVVMVTKPKAVST K I L E K N 1 0 1 3 0 0 2 0 0 2 2 3 0 0 0 0 1 0 1 0 0 0 16 2 1906.9888 P54727;Q5W0S5;Q5W0S4 P54727 52 67 RAD23B UV excision repair protein RAD23 homolog B yes no 4 0.029801 26.781 By MS/MS 1 0.67939 0.66083 NaN 1 Median 0.67939 0.66083 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6721800 4181800 2540000 6721800 4181800 2540000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15477 2486 16115 80048 81216 81216 1 ILNDLSSDAPGVPR QKRREILSRRPSYRKILNDLSSDAPGVPRI KILNDLSSDAPGVPRIEEEKSEEETSAPAI K I L P R I 1 1 1 2 0 0 0 1 0 1 2 0 0 0 2 2 0 0 0 1 0 0 14 0 1452.7573 P16220;C9J4L5;C9JBT4;H7C3I0;E7EWP8;C9J896 P16220 137 150 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 2 5.4183E-06 153.12 By MS/MS By MS/MS 1 1 1.2624 1.3273 91.476 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63493 0.69509 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5098 2.5344 NaN 1 1 Median NaN NaN NaN 0 0 Median 43169000 23076000 20093000 0 0 0 0 0 0 27604000 18299000 9304700 0 0 0 15565000 4777600 10788000 0 0 0 15478 2027 16116 80049;80050 81217;81218;81219 81217 3 ILNDVQDR KGLAITFVSDENDAKILNDVQDRFEVNISE SDENDAKILNDVQDRFEVNISELPDEIDIS K I L D R F 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 971.50361 H0Y400;O00148;Q13838;A0A0G2JJZ9 Q13838 399 406 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 0.0022672 139.31 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.072 0.95854 7.3182 6 Median 1.085 1.0766 NaN 1 0 Median 1.0954 0.93023 7.4973 2 0 Median 0.96657 0.93671 NaN 1 0 Median 1.161 0.99849 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0593 0.90201 NaN 1 0 Median 98536000 46399000 52137000 1468900 847330 621530 14626000 6493300 8132400 56694000 27878000 28816000 24534000 10621000 13913000 0 0 0 1212700 559170 653530 15479 2842;1441;1146 16117 80051;80052;80053;80054;80055;80056 81220;81221;81222;81223;81224;81225;81226 81224 7 ILNEKPTTDEPEK EKTERSNSEDKLNSKILNEKPTTDEPEKAV SKILNEKPTTDEPEKAVEDINEHITDAQLE K I L E K A 0 0 1 1 0 0 3 0 0 1 1 2 0 0 2 0 2 0 0 0 0 0 13 1 1512.7672 Q9H2G2 Q9H2G2 380 392 SLK STE20-like serine/threonine-protein kinase yes yes 3 0.04779 16.725 By matching By MS/MS 1 1 0.70156 0.70467 19.216 2 Median 0.59282 0.61514 NaN 1 0 Median 0.83025 0.80723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3828200 2203200 1625000 2327200 1441900 885250 1501000 761270 739750 0 0 0 0 0 0 0 0 0 0 0 0 15480 3942 16118 80057;80058 81227;81228 81228 2 ILNEMRDQYEK INVEMDAAPGVDLSRILNEMRDQYEKMAEK DLSRILNEMRDQYEKMAEKNRKDAEDWFFS R I L E K M 0 1 1 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 11 1 1437.6922 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9;K7ESE1;CON__Q6IFX2 CON__Q04695 252 262 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2;3 1.3696E-47 196.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 6 7 7 7 5 0.26633 0.2703 107.22 42 Median 0.23733 0.24619 92.997 12 7 Median 0.31396 0.2925 85.977 5 4 Median 0.3959 0.42226 192.69 6 4 Median 0.2055 0.17838 104.39 7 5 Median 0.16757 0.18314 90.125 7 4 Median 0.54544 0.48803 58.062 5 1 Median 736300000 551050000 185250000 131100000 111960000 19141000 25699000 21759000 3939700 104110000 89914000 14197000 151620000 103250000 48371000 266450000 187250000 79209000 57318000 36928000 20390000 + 15481 768;739;787 16119 80059;80060;80061;80062;80063;80064;80065;80066;80067;80068;80069;80070;80071;80072;80073;80074;80075;80076;80077;80078;80079;80080;80081;80082;80083;80084;80085;80086;80087;80088;80089;80090;80091;80092;80093;80094;80095;80096;80097;80098;80099;80100;80101;80102;80103;80104 81229;81230;81231;81232;81233;81234;81235;81236;81237;81238;81239;81240;81241;81242;81243;81244;81245;81246;81247;81248;81249;81250;81251;81252;81253;81254;81255;81256;81257;81258;81259;81260;81261;81262;81263;81264;81265;81266;81267;81268;81269;81270;81271;81272;81273;81274;81275;81276 81248 48 ILNEMRDQYEQMAEK VNVEMDAAPGVDLSRILNEMRDQYEQMAEK ILNEMRDQYEQMAEKNRRDAETWFLSKTEE R I L E K N 1 1 1 1 0 2 3 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 15 1 1896.871 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P08779 285 299 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 3.52E-31 157.52 By MS/MS By MS/MS By MS/MS 4 3 1 0.08504 0.085537 90.499 7 Median 0.11807 0.12294 52.323 4 4 Median NaN NaN NaN 0 0 Median 0.038797 0.044988 54.145 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120830000 116740000 4084800 43912000 40813000 3098900 0 0 0 73684000 72698000 985920 0 0 0 3229300 3229300 0 0 0 0 + 15482 754 16120 80105;80106;80107;80108;80109;80110;80111;80112 81277;81278;81279;81280;81281;81282;81283;81284 81282 8 ILNFGQVK PVCGLHSVISPSDGRILNFGQVKNCEVEQV ISPSDGRILNFGQVKNCEVEQVKGVTYSLE R I L V K N 0 0 1 0 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 917.53345 B1AKM8;B1AKM6;H0Y7P7;Q9UG56 B1AKM8 160 167 PISD Phosphatidylserine decarboxylase proenzyme;Phosphatidylserine decarboxylase alpha chain;Phosphatidylserine decarboxylase beta chain yes no 2 0.054712 33.738 By MS/MS 1 1.0844 0.91131 NaN 1 Median NaN NaN NaN 0 0 Median 1.0844 0.91131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8088300 3966700 4121600 0 0 0 8088300 3966700 4121600 0 0 0 0 0 0 0 0 0 0 0 0 15483 567 16121 80113 81285 81285 1 ILNFLMHPK LDLERSGVNSELVKRILNFLMHPKPSGKPL SELVKRILNFLMHPKPSGKPLPKSKKTCSK R I L P K P 0 0 1 0 0 0 0 0 1 1 2 1 1 1 1 0 0 0 0 0 0 0 9 0 1111.6212 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 179 187 DEK Protein DEK yes no 2 0.00093857 89.55 By MS/MS By MS/MS By matching By matching 4 4 1 1 1.0242 0.89366 35.04 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80908 0.78518 59.267 4 0 Median 1.0842 0.94821 4.0053 4 0 Median 0.89882 0.86596 NaN 1 0 Median 1.0263 0.87416 NaN 1 0 Median 217960000 112480000 105480000 0 0 0 0 0 0 136110000 72838000 63267000 80003000 38683000 41320000 1161400 613510 547850 688950 344310 344640 15484 1166 16122;16123 80114;80115;80116;80117;80118;80119;80120;80121;80122;80123 81286;81287;81288;81289;81290;81291;81292;81293;81294;81295;81296;81297 81296 386 12 ILNFLMHPKPSGK LDLERSGVNSELVKRILNFLMHPKPSGKPL KRILNFLMHPKPSGKPLPKSKKTCSKGSKK R I L G K P 0 0 1 0 0 0 0 1 1 1 2 2 1 1 2 1 0 0 0 0 0 0 13 1 1480.8224 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0 H0Y993 179 191 DEK Protein DEK yes no 3 0.0011379 80.96 By MS/MS 1 0.76054 0.72237 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76054 0.72237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8144800 4323200 3821600 0 0 0 0 0 0 0 0 0 8144800 4323200 3821600 0 0 0 0 0 0 15485 1166 16124 80124 81298 81298 386 1 ILNFLMHPKPSGKPLPK LDLERSGVNSELVKRILNFLMHPKPSGKPL NFLMHPKPSGKPLPKSKKTCSKGSKKERNS R I L P K S 0 0 1 0 0 0 0 1 1 1 3 3 1 1 4 1 0 0 0 0 0 0 17 2 1916.107 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0 H0Y993 179 195 DEK Protein DEK yes no 4 6.6914E-07 85.619 By MS/MS By MS/MS By matching 2 3 1 0.54435 0.5824 35.72 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49653 0.5824 3.8919 2 0 Median 0.63578 0.61112 49.99 3 0 Median 0.51338 0.55922 NaN 1 0 Median NaN NaN NaN 0 0 Median 102840000 63927000 38917000 0 0 0 0 0 0 30134000 19317000 10817000 67243000 41086000 26157000 5466700 3523400 1943300 0 0 0 15486 1166 16125;16126 80125;80126;80127;80128;80129;80130 81299;81300;81301;81302;81303;81304;81305 81304 386 7 ILNGAFR KSGKQLPPHLVQGAKILNGAFRSWTKKQAL PHLVQGAKILNGAFRSWTKKQALAEHEDEL K I L F R S 1 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 789.44972 O75151 O75151 401 407 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.030853 64.563 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14491000 0 14491000 0 0 0 0 0 0 12032000 0 12032000 2459100 0 2459100 0 0 0 0 0 0 15487 1649 16127 80131;80132 81306;81307 81306 2 ILNGHSLTR LLWIDTKIAARMLWRILNGHSLTRRERRQF ARMLWRILNGHSLTRRERRQFLRICADLFR R I L T R R 0 1 1 0 0 0 0 1 1 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1009.5669 O95202 O95202 185 193 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.0052544 72.485 By MS/MS 2 1.6391 1.425 NaN 1 Median NaN NaN NaN 0 0 Median 1.6391 1.425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2028700 675050 1353600 0 0 0 2028700 675050 1353600 0 0 0 0 0 0 0 0 0 0 0 0 15488 1754 16128 80133;80134 81308;81309 81308 2 ILNHFDVQLPESMEDDGLSER NISTGVSKIRLLTIRILNHFDVQLPESMED VQLPESMEDDGLSERQSVFAILRQAELVPA R I L E R Q 0 1 1 3 0 1 3 1 1 1 3 0 1 1 1 2 0 0 0 1 0 0 21 0 2443.1326 O75691 O75691 652 672 UTP20 Small subunit processome component 20 homolog yes yes 3 3.7915E-07 48.656 By MS/MS 1 0.9052 1.005 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9052 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1629700 745170 884560 0 0 0 0 0 0 1629700 745170 884560 0 0 0 0 0 0 0 0 0 15489 1691 16129 80135 81310 81310 1 ILNKQQDDFGK HAVVSRKDKATCVEKILNKQQDDFGKSVTD CVEKILNKQQDDFGKSVTDCTSNFCLFQSN K I L G K S 0 0 1 2 0 2 0 1 0 1 1 2 0 1 0 0 0 0 0 0 0 0 11 1 1304.6725 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 626 636 yes no 3 0.021866 38.402 By MS/MS 1 0.019369 0.020052 NaN 1 Median 0.019369 0.020052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1614300 1578600 35692 1614300 1578600 35692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15490 769 16130 80136 81311 81311 1 ILNLLSPSDGER EQMGDHKMAMDGYRRILNLLSPSDGERFMQ YRRILNLLSPSDGERFMQLARDMAKSYYEA R I L E R F 0 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 12 0 1312.6987 Q9Y5Q9;A0A494C1S7 Q9Y5Q9 277 288 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 4.473E-06 113.62 By matching By MS/MS By matching 1 1 1 0.90407 0.95856 68.255 3 Median NaN NaN NaN 0 0 Median 1.3682 1.2069 NaN 1 0 Median 0.90407 0.95856 NaN 1 0 Median 0.38004 0.33541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17063000 9109500 7953900 0 0 0 960100 398870 561220 15141000 7983300 7157500 962570 727410 235170 0 0 0 0 0 0 15491 4467 16131 80137;80138;80139 81312;81313 81313 2 ILNLSGNELK LDDMSSIVQKAPNLKILNLSGNELKSEREL APNLKILNLSGNELKSERELDKIKGLKLEE K I L L K S 0 0 2 0 0 0 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1099.6237 Q9UBU9;E9PIN3;B4E227 Q9UBU9 295 304 NXF1 Nuclear RNA export factor 1 yes no 2 0.00039409 78.516 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.1012 1.0796 8.1937 7 Median 0.96796 0.92567 NaN 1 0 Median 1.2311 1.0445 NaN 1 0 Median 1.0977 1.096 NaN 1 0 Median 1.276 1.0876 NaN 1 0 Median 1.1105 1.1062 3.4431 2 0 Median 1.1012 0.92732 NaN 1 0 Median 42598000 20133000 22465000 5286400 2989600 2296800 5059600 2211000 2848600 23040000 10634000 12405000 2511900 1133600 1378400 5314400 2516500 2797900 1386000 647750 738230 15492 4249 16132 80140;80141;80142;80143;80144;80145;80146 81314;81315;81316;81317;81318 81314 5 ILNMDFETEVDK NLRALKYLVMDEADRILNMDFETEVDKILK ADRILNMDFETEVDKILKVIPRDRKTFLFS R I L D K I 0 0 1 2 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1452.6806 Q9H0S4;F5H1N9 Q9H0S4 179 190 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 2 5.4518E-05 134.68 By MS/MS By MS/MS 2 1 1.0698 1.0358 24.2 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0359 0.99745 9.2472 2 0 Median 0.74553 0.66623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38752000 17124000 21628000 0 0 0 0 0 0 35530000 15202000 20328000 3222100 1921600 1300500 0 0 0 0 0 0 15493 3928 16133;16134 80147;80148;80149 81319;81320;81321;81322 81320 1855 4 ILNMSSGR NLGIRLGLDPKLLAKILNMSSGRCWSSDTY DPKLLAKILNMSSGRCWSSDTYNPVPGVMD K I L G R C 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 8 0 876.44874 P31937;H7BZL2 P31937 243 250 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes no 2 0.0022957 111.01 By MS/MS 1 1.0238 0.97443 NaN 1 Median 1.0238 0.97443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4255400 2309300 1946100 4255400 2309300 1946100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15494 2206 16135 80150 81323 81323 1 ILNNSGLPITSAIDLEDAAK LVVRLEGTNVQEAQKILNNSGLPITSAIDL GLPITSAIDLEDAAKKAVASVAKK______ K I L A K K 3 0 2 2 0 0 1 1 0 3 3 1 0 0 1 2 1 0 0 0 0 0 20 0 2054.0895 Q96I99;H0Y852 Q96I99 404 423 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.00070058 35.204 By matching By MS/MS By matching 1 1 1 1.2209 0.78073 22.684 3 Plateau 0.75907 0.70891 NaN 1 0 Median 1.2791 1.0921 NaN 1 0 Median 0.71616 0.78073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13552000 6452700 7099000 3984000 2094800 1889200 6785800 2666100 4119700 2781900 1691800 1090100 0 0 0 0 0 0 0 0 0 15495 3678 16136 80151;80152;80153 81324 81324 1 ILNPEEIEK KNIELAVMRRDQSLKILNPEEIEKYVAEIE RDQSLKILNPEEIEKYVAEIEKEKEENEKK K I L E K Y 0 0 1 0 0 0 3 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1083.5812 O14818;H0Y586 O14818 219 227 PSMA7 Proteasome subunit alpha type-7 yes no 2 0.00057143 113.26 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0068 0.88878 5.4212 4 Median 0.92392 0.8518 NaN 1 0 Median 1.0497 0.87274 NaN 1 0 Median 0.96558 0.90513 NaN 1 0 Median 1.1659 0.96482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134990000 68981000 66011000 86027000 44944000 41083000 31119000 15455000 15664000 16148000 7763700 8384100 1698000 818120 879830 0 0 0 0 0 0 15496 1497 16137 80154;80155;80156;80157 81325;81326;81327;81328;81329;81330;81331;81332 81332 8 ILNPLLDR RWAGVLSRLALEQERILNPLLDRVRTADHH LALEQERILNPLLDRVRTADHHQLRSLTGL R I L D R V 0 1 1 1 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 0 952.57057 Q9Y446 Q9Y446 656 663 PKP3 Plakophilin-3 yes yes 2 0.0034335 96.492 By MS/MS By matching By MS/MS By matching 3 2 3 2 0.99755 0.94067 30.029 10 Median 0.99987 0.97859 24.423 3 0 Median 1.1318 1.0039 18.348 2 0 Median 0.63609 0.64676 38.793 3 0 Median 1.1338 0.98054 2.5385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20648000 11380000 9267900 6275700 3165100 3110600 845410 396280 449130 12555000 7353600 5201500 972100 465500 506600 0 0 0 0 0 0 15497 4437 16138 80158;80159;80160;80161;80162;80163;80164;80165;80166;80167 81333;81334;81335 81335 3 ILNPMTVPR EISLDLKKTRDAAFKILNPMTVPRFFRLNS RDAAFKILNPMTVPRFFRLNSNNALIEFLL K I L P R F 0 1 1 0 0 0 0 0 0 1 1 0 1 0 2 0 1 0 0 1 0 0 9 0 1039.5848 Q96JB2 Q96JB2 649 657 COG3 Conserved oligomeric Golgi complex subunit 3 yes yes 2 0.059998 42.869 By MS/MS 1 0.90633 0.89717 NaN 1 Median 0.90633 0.89717 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1851900 1023400 828560 1851900 1023400 828560 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15498 3683 16139 80168 81336 81336 1 ILNVPQELYEK SGLRVDWQENDFSKRILNVPQELYEKGYVK FSKRILNVPQELYEKGYVKDVDDGLQAAEE R I L E K G 0 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 1 1 0 0 11 0 1344.7289 Q13085 Q13085 278 288 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.00016142 95.573 By MS/MS By MS/MS 1 2 0.69967 0.702 29.756 3 Median 0.69967 0.702 NaN 1 0 Median 0.67659 0.59519 39.865 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32550000 19209000 13341000 22778000 12614000 10164000 9772000 6594300 3177700 0 0 0 0 0 0 0 0 0 0 0 0 15499 2784 16140 80169;80170;80171 81337;81338;81339 81337 3 ILPAAALASEHSK HSEKSDGPFRDSDNKILPAAALASEHSKGT NKILPAAALASEHSKGTSSIAITALMEEKG K I L S K G 4 0 0 0 0 0 1 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 13 0 1306.7245 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 436 448 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2;3 0.00025168 62.162 By MS/MS By matching By matching 2 1 1 0.91457 1.0182 19.25 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7563 0.83375 23.792 2 0 Median NaN NaN NaN 0 0 Median 0.93442 1.0554 NaN 1 0 Median 1.3147 1.0508 NaN 1 0 Median 57818000 27763000 30054000 0 0 0 0 0 0 32027000 15707000 16320000 0 0 0 11976000 6307600 5668400 13815000 5748500 8066300 15500 3251 16141 80172;80173;80174;80175 81340;81341;81342 81340 3 ILPDDPDKKPQAK WEMIKMDPDLSLTHKILPDDPDKKPQAKQL HKILPDDPDKKPQAKQLQTRADYLIKLLSR K I L A K Q 1 0 0 3 0 1 0 0 0 1 1 3 0 0 3 0 0 0 0 0 0 0 13 2 1463.7984 O14646 O14646 1288 1300 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0085612 27.681 By matching By matching By MS/MS 1 1 2 0.75697 0.86475 31.538 4 Median 0.46953 0.51406 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93319 1.0812 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75697 0.86475 0.37351 2 0 Median NaN NaN NaN 0 0 Median 4001600 2128200 1873400 471830 307930 163900 0 0 0 217880 121370 96515 0 0 0 3311900 1698900 1613000 0 0 0 15501 1486 16142 80176;80177;80178;80179 81343;81344 81344 2 ILPDSGGVAK APLLYPEKRDILMDRILPDSGGVAKTMMES ILMDRILPDSGGVAKTMMESSLADFMQEVG R I L A K T 1 0 0 1 0 0 0 2 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 955.53385 A5YKK6 A5YKK6 239 248 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.035967 32.32 By MS/MS 1 0.99808 0.87223 NaN 1 Median NaN NaN NaN 0 0 Median 0.99808 0.87223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1188800 549340 639460 0 0 0 1188800 549340 639460 0 0 0 0 0 0 0 0 0 0 0 0 15502 503 16143 80180 81345 81345 1 ILPEAHQR MAQAASAAVTRGDLRILPEAHQRTWHAWMD VTRGDLRILPEAHQRTWHAWMDNIREWCIS R I L Q R T 1 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 962.52976 P26640;A0A140T936 P26640 700 707 VARS Valine--tRNA ligase yes no 2 0.019561 47.067 By matching By MS/MS By MS/MS 1 1 1 1.3635 1.0575 8.0942 3 Plateau 1.0617 1.0575 NaN 1 0 Median 1.365 1.1737 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1596 1.0008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2426100 1121700 1304400 212290 96205 116080 1752800 799220 953550 0 0 0 461060 226260 234810 0 0 0 0 0 0 15503 2148 16144 80181;80182;80183 81346;81347 81347 2 ILPEIIPILEEGLR AARTLGDLVRKLGEKILPEIIPILEEGLRS KILPEIIPILEEGLRSQKSDERQGVCIGLS K I L L R S 0 1 0 0 0 0 3 1 0 4 3 0 0 0 2 0 0 0 0 0 0 0 14 0 1603.9549 Q92616 Q92616 1960 1973 GCN1L1 Translational activator GCN1 yes yes 2 0.053211 23.987 By MS/MS By matching By matching 3 2 1 0.83136 0.76182 12.219 6 Median 0.70825 0.69126 13.217 3 0 Median 0.87123 0.76182 2.8888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0082 0.85586 NaN 1 0 Median 4630700 2531000 2099700 3718600 2074000 1644600 811190 415280 395910 0 0 0 0 0 0 0 0 0 100920 41782 59142 15504 3544 16145 80184;80185;80186;80187;80188;80189 81348 81348 1 ILPEYLSNWTMEK TEVIQLFPEKGNMGKILPEYLSNWTMEKVR GKILPEYLSNWTMEKVRREGVKVMPNAIVQ K I L E K V 0 0 1 0 0 0 2 0 0 1 2 1 1 0 1 1 1 1 1 0 0 0 13 0 1622.8014 O95831;E9PMA0 O95831 343 355 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 8.9483E-05 85.377 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 1 2 1 0.95736 0.93952 19.317 8 Median 0.95744 0.89836 8.5945 3 0 Plateau 1.2563 1.0807 NaN 1 0 Median 0.92409 0.98257 NaN 1 0 Median 1.2414 1.0771 35.692 2 0 Median 1.0257 0.98523 NaN 1 0 Median NaN NaN NaN 0 0 Median 28112000 13909000 14203000 18860000 9683200 9177100 3062100 1308900 1753200 3736300 1856100 1880200 894090 381660 512430 1559300 678760 880500 0 0 0 15505 1797 16146 80190;80191;80192;80193;80194;80195;80196;80197 81349;81350;81351;81352;81353;81354;81355 81349 7 ILPIMFPSLYR NNEYIMSLISDNAAKILPIMFPSLYRNSKT NAAKILPIMFPSLYRNSKTHWNKTIHGLIY K I L Y R N 0 1 0 0 0 0 0 0 0 2 2 0 1 1 2 1 0 0 1 0 0 0 11 0 1348.7577 H0YJ75;Q13362;Q96B13;H0YN84 H0YJ75 395 405 PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform yes no 2 0.013325 37.476 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.97131 0.97916 24.643 6 Median 0.78588 0.7806 NaN 1 0 Median 1.5584 1.3968 NaN 1 0 Median 0.7818 0.8028 9.3326 2 0 Median NaN NaN NaN 0 0 Median 1.1031 1.1247 0.84889 2 0 Median NaN NaN NaN 0 0 Median 5927100 2895900 3031100 1589600 852950 736610 152480 57086 95391 2687100 1328900 1358200 0 0 0 1497900 656990 840940 0 0 0 15506 1185 16147 80198;80199;80200;80201;80202;80203 81356;81357;81358;81359 81359 4 ILPNYHHLKK ERPQPQTLQLDFLMKILPNYHHLKKTMKGS DFLMKILPNYHHLKKTMKGSSTPVKN____ K I L K K T 0 0 1 0 0 0 0 0 2 1 2 2 0 0 1 0 0 0 1 0 0 0 10 1 1261.7295 O00399 O00399 170 179 DCTN6 Dynactin subunit 6 yes yes 3 0.021301 24.089 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.9661 0.92416 10.653 4 Median 0.8981 0.91432 NaN 1 0 Median 1.0395 0.95285 NaN 1 0 Median 0.74554 0.7565 NaN 1 0 Median 1.0393 0.93411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4755400 2507200 2248200 1554600 771720 782870 1145300 558930 586380 1592800 920630 672220 462670 255910 206760 0 0 0 0 0 0 15507 1458 16148 80204;80205;80206;80207 81360;81361;81362;81363;81364 81361 5 ILPQYIFNSR QEEFKHIAVFPCKIKILPQYIFNSRDPIVM PCKIKILPQYIFNSRDPIVMGVTVEAGQVK K I L S R D 0 1 1 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 0 10 0 1249.6819 A0A087WUT6;O60841 A0A087WUT6 1096 1105 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.00033827 85.676 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 3 3 1.068 1.1596 15.03 10 Linear 1.2327 1.1568 NaN 1 0 Median 0.97035 0.82987 5.1735 2 0 Median 1.1192 1.2306 NaN 1 0 Median 1.084 0.9553 5.9578 3 0 Plateau NaN NaN NaN 0 0 Median 1.1724 0.97182 13.172 3 0 Plateau 50532000 22375000 28156000 20294000 8618200 11675000 5753000 2801600 2951400 14689000 6235500 8453500 8746200 4208100 4538000 0 0 0 1049800 511930 537880 15508 35 16149 80208;80209;80210;80211;80212;80213;80214;80215;80216;80217 81365;81366;81367;81368;81369;81370;81371 81368 7 ILPSLLQNR KLVADMLLIQAYSAKILPSLLQNRETFWAE QAYSAKILPSLLQNRETFWAEQVTEVKILE K I L N R E 0 1 1 0 0 1 0 0 0 1 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1052.6342 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4800 4808 SYNE2 Nesprin-2 yes no 2 0.00094593 89.142 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 0.9903 0.92996 26.754 6 Median 0.7629 0.76485 NaN 1 0 Median 1.5653 1.3238 NaN 1 0 Median 0.79155 0.83365 NaN 1 0 Median 1.3518 1.1757 NaN 1 0 Median 0.63056 0.66104 NaN 1 0 Median 1.239 1.0374 NaN 1 0 Median 27026000 13790000 13236000 4815300 2547500 2267800 2213300 651160 1562200 13983000 7323700 6659000 760060 307590 452470 4246500 2512500 1734000 1008000 447650 560330 15509 3521 16150 80218;80219;80220;80221;80222;80223 81372;81373;81374 81374 3 ILPTLEAVAALGNK MTTGHNVADLVVILKILPTLEAVAALGNKV KILPTLEAVAALGNKVVESLRAQDPSEVLT K I L N K V 3 0 1 0 0 0 1 1 0 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1408.829 B4DY09;Q12905;X6R6Z1 B4DY09 90 103 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 3.5206E-09 134.68 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 7 4 9 8 0.94432 0.87583 15.148 32 Median 1.4702 1.3865 NaN 1 0 Median 1.2246 1.0682 10.471 3 0 Median 0.8766 0.87095 10.009 7 0 Median 1.0838 0.92836 12.847 4 0 Median 0.86986 0.86351 8.6266 9 0 Median 1.0149 0.82516 17.163 8 1 Median 732060000 374590000 357460000 526920 250130 276800 45605000 21250000 24355000 312660000 164800000 147860000 132690000 62473000 70218000 187820000 99848000 87973000 52753000 25969000 26784000 15510 609 16151 80224;80225;80226;80227;80228;80229;80230;80231;80232;80233;80234;80235;80236;80237;80238;80239;80240;80241;80242;80243;80244;80245;80246;80247;80248;80249;80250;80251;80252;80253;80254;80255 81375;81376;81377;81378;81379;81380;81381;81382;81383;81384;81385;81386;81387;81388;81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400;81401;81402;81403;81404;81405;81406;81407;81408;81409;81410;81411;81412;81413 81402 39 ILPVAASYSAVTR VDPNLDLSIRELVHRILPVAASYSAVTRFI HRILPVAASYSAVTRFIEEKSSFEYGQVNH R I L T R F 3 1 0 0 0 0 0 0 0 1 1 0 0 0 1 2 1 0 1 2 0 0 13 0 1346.7558 Q9BSJ2;F2Z2B9 Q9BSJ2 263 275 TUBGCP2 Gamma-tubulin complex component 2 yes no 2 3.8663E-07 110.39 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0416 1.0056 13.108 5 Median 1.0416 1.0056 NaN 1 0 Median 0.89906 0.81902 NaN 1 0 Median 1.037 1.1066 NaN 1 0 Median 1.1133 0.95932 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3921 1.1387 NaN 1 0 Median 16485000 8430300 8054500 7367800 3757500 3610300 724600 297220 427380 5268300 2883400 2384900 2299700 1147800 1151900 0 0 0 824460 344430 480030 15511 3815 16152 80256;80257;80258;80259;80260 81414;81415;81416;81417 81416 4 ILPVFDEPPNPTNVEESLKR GVDQEHFSNVVKGEKILPVFDEPPNPTNVE DEPPNPTNVEESLKRTKENDAHLVEVNLNN K I L K R T 0 1 2 1 0 0 3 0 0 1 2 1 0 1 4 1 1 0 0 2 0 0 20 1 2293.1954 Q9NYL9;H0YKU1;H0YNJ8 Q9NYL9 173 192 TMOD3 Tropomodulin-3 yes no 3 3.5988E-11 95.205 By MS/MS By matching 1 1 0.45007 0.45002 11.397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36454 0.41518 NaN 1 0 Median 0.55566 0.48779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14796000 10683000 4112400 0 0 0 0 0 0 13622000 10018000 3604100 1173400 665120 508330 0 0 0 0 0 0 15512 4178 16153 80261;80262 81418;81419;81420;81421 81420 4 ILPVNLK KMSGLIVGSAFGPIKILPVNLKAVKGYFTL GSAFGPIKILPVNLKAVKGYFTLRQPVILW K I L L K A 0 0 1 0 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 7 0 795.52182 Q9UKN8 Q9UKN8 342 348 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.043581 56.026 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1798100 0 1798100 0 0 0 0 0 0 1798100 0 1798100 0 0 0 0 0 0 0 0 0 15513 4314 16154 80263 81422 81422 1 ILPVSAIR RIAAFEEGGKFVGHRILPVSAIRSGYHYVC GKFVGHRILPVSAIRSGYHYVCLRNEANQP R I L I R S 1 1 0 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 8 0 867.55419 Q01970 Q01970 810 817 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.031031 38.792 By matching By MS/MS By matching 1 1 2 0.88156 0.86729 18.418 4 Median NaN NaN NaN 0 0 Median 0.91619 0.8061 NaN 1 0 Median 0.84824 0.93312 NaN 1 0 Median 0.90208 0.7784 28.173 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8045000 3671700 4373300 0 0 0 244890 119800 125090 4485900 2160500 2325400 3314200 1391400 1922800 0 0 0 0 0 0 15514 2695 16155 80264;80265;80266;80267 81423 81423 1 ILPWSTFR QPTLHKMSMMGHRVRILPWSTFRLNLSVTT MMGHRVRILPWSTFRLNLSVTTPYNADFDG R I L F R L 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 1 0 0 0 0 8 0 1018.56 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 476 483 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.011909 56.011 By matching By MS/MS By MS/MS By matching 1 1 1 2 0.77917 0.84409 12.778 5 Median NaN NaN NaN 0 0 Median 0.77462 0.64232 NaN 1 0 Median 0.77917 0.86552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77719 0.81247 NaN 1 0 Median 1.0356 0.85898 2.4739 2 0 Median 8872000 4966300 3905700 0 0 0 1353600 647350 706250 2383300 1526500 856770 0 0 0 4999500 2736400 2263100 135610 56083 79527 15515 486 16156 80268;80269;80270;80271;80272 81424;81425;81426 81425 3 ILPWYPK GEYTHIRNILIVLTKILPWYPKVLNLGQAL NILIVLTKILPWYPKVLNLGQALERRVHKI K I L P K V 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 0 1 1 0 0 0 7 0 915.52182 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1130 1136 THOC2 THO complex subunit 2 yes no 2 0.040961 44.611 By MS/MS By matching By matching 2 2 1 0.84986 0.80147 5.9815 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73538 0.80603 5.0516 2 0 Median 0.93122 0.82804 10.363 2 0 Median NaN NaN NaN 0 0 Median 0.92861 0.80147 NaN 1 0 Median 9745200 5385100 4360100 0 0 0 0 0 0 8883200 4964000 3919200 712390 371160 341240 0 0 0 149620 50006 99610 15516 3448 16157 80273;80274;80275;80276;80277 81427 81427 1 ILQAGFKR KFQAKLEHEYIQNFKILQAGFKRMGVDKII EYIQNFKILQAGFKRMGVDKIIPVDKLVKG K I L K R M 1 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 1 931.56034 Q15691 Q15691 77 84 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2 0.0050393 89.673 By MS/MS By MS/MS By matching By MS/MS 3 2 3 3 1.2658 1.2668 17.561 11 Median 1.2223 1.2299 12.905 3 0 Median 1.6854 1.5088 23.511 2 0 Median 1.2582 1.321 17.857 3 0 Median 1.2658 1.1946 15.196 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38247000 16934000 21313000 16547000 7551800 8995400 3611100 1411400 2199700 4842400 2319900 2522500 13246000 5651200 7595200 0 0 0 0 0 0 15517 2963 16158 80278;80279;80280;80281;80282;80283;80284;80285;80286;80287;80288 81428;81429;81430;81431;81432 81429 5 ILQAVNFPFLVK VVKLKQIEHTLNEKRILQAVNFPFLVKLEF EKRILQAVNFPFLVKLEFSFKDNSNLYMVM R I L V K L 1 0 1 0 0 1 0 0 0 1 2 1 0 2 1 0 0 0 0 2 0 0 12 0 1387.8228 P17612;Q15136;K7ERP6 P17612 95 106 PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit alpha yes no 2 0.0015941 51.066 By matching By MS/MS By MS/MS 1 1 1 0.87888 0.80889 0.87402 3 Median 0.87888 0.81852 NaN 1 0 Median 0.94126 0.80468 NaN 1 0 Median 0.72699 0.80889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16974000 8838700 8135600 8995200 4662700 4332500 5885300 2990000 2895300 2093800 1186000 907870 0 0 0 0 0 0 0 0 0 15518 2044 16159 80289;80290;80291 81433;81434 81433 2 ILQAVNFPFLVR VVKLKQIEHTLNEKRILQAVNFPFLVRLEY EKRILQAVNFPFLVRLEYAFKDNSNLYMVM R I L V R L 1 1 1 0 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 2 0 0 12 0 1415.8289 A0A087WVC4;A0A0A0MS54;P22694;B1APF7;B1APG1;B1APG0;B1APG2;B1APF8;B1APF9;B1APG3 A0A087WVC4 82 93 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes no 2 0.00059855 71.223 By MS/MS By matching 1 1 0.93065 0.86429 0.71175 2 Median 0.86503 0.86866 NaN 1 0 Median 1.0012 0.85996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616300 2432400 2183900 2372500 1246000 1126500 2243800 1186300 1057400 0 0 0 0 0 0 0 0 0 0 0 0 15519 40 16160 80292;80293 81435;81436 81436 2 ILQDDVACDIIK IKLLARSVSFEQAVRILQDDVACDIIKIGS AVRILQDDVACDIIKIGSLVRNKERFVKRR R I L I K I 1 0 0 3 1 1 0 0 0 3 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1401.7174 Q13601 Q13601 135 146 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.00090694 67.726 By matching By MS/MS By matching 1 2 1 1.321 1.1594 69.234 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3622 0.36518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3229 1.2602 NaN 1 0 Median 1.321 1.1594 NaN 1 0 Median 7711800 3369800 4342000 0 0 0 0 0 0 2441100 1516300 924790 0 0 0 4538000 1508600 3029400 732720 344930 387780 15520 2830 16161 80294;80295;80296;80297 81437;81438 81437 2 ILQDGGLQVVEK RKVLISDSLDPCCRKILQDGGLQVVEKQNL CRKILQDGGLQVVEKQNLSKEELIAELQDC K I L E K Q 0 0 0 1 0 2 1 2 0 1 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1297.7242 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2;A0A286YF34;A0A286YFF3;A0A286YFK5 A0A286YF22 22 33 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 3.9693E-06 105.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 1 1 1.3766 1.1886 34.902 10 Median 0.99577 0.92509 17.44 4 0 Median 1.4264 1.2225 5.1055 2 0 Median 1.1995 1.1637 NaN 1 0 Median 1.3964 1.1981 NaN 1 0 Median 3.1413 2.9991 NaN 1 0 Median 1.4964 1.2477 NaN 1 0 Median 224760000 97499000 127270000 144870000 68014000 76856000 43984000 17075000 26909000 15595000 6379600 9215600 4415100 1854100 2561000 13691000 3327800 10363000 2207900 847950 1360000 15521 351 16162 80298;80299;80300;80301;80302;80303;80304;80305;80306;80307 81439;81440;81441;81442;81443;81444;81445;81446;81447;81448;81449;81450;81451 81440 13 ILQDSLGGNCR EGSTYVPYRDSKMTRILQDSLGGNCRTTIV KMTRILQDSLGGNCRTTIVICCSPSSYNES R I L C R T 0 1 1 1 1 1 0 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1231.5979 O60282;A0A0G2JMZ6;P33176 P33176 285 295 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 0.00012361 138.1 By MS/MS 2 1.5006 1.2822 35.933 2 Median NaN NaN NaN 0 0 Median 1.5006 1.2822 35.933 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8604000 3947600 4656400 0 0 0 8604000 3947600 4656400 0 0 0 0 0 0 0 0 0 0 0 0 15522 2221;1609 16163 80308;80309 81452;81453 81452 2 ILQDVADEEIAALPR RLRINSLRKNTILPKILQDVADEEIAALPR ILQDVADEEIAALPRDSCPVRIRNRCVMTS K I L P R D 3 1 0 2 0 1 2 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1651.8781 O60783 O60783 66 80 MRPS14 28S ribosomal protein S14, mitochondrial yes yes 2 1.6904E-10 109.6 By matching By matching By MS/MS 1 1 1 0.93498 0.9206 13.982 3 Median 0.93498 0.9206 NaN 1 0 Median 1.3304 1.122 NaN 1 0 Median 0.84476 0.85646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4861900 2492300 2369600 470010 237190 232830 212010 91697 120320 4179900 2163400 2016500 0 0 0 0 0 0 0 0 0 15523 1631 16164 80310;80311;80312 81454;81455 81455 2 ILQEAQNLMALTNVDTPLK SVALRTPRTPASQDRILQEAQNLMALTNVD AQNLMALTNVDTPLKGGLNTPLHESDFSGV R I L L K G 2 0 2 1 0 2 1 0 0 1 4 1 1 0 1 0 2 0 0 1 0 0 19 0 2111.1296 Q99459 Q99459 362 380 CDC5L Cell division cycle 5-like protein yes yes 2;3 9.486E-07 52.612 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 4 3 2 1 0.937 0.88205 12.755 15 Median 1.055 1.0667 10.014 2 0 Median 0.96432 0.8708 9.9682 3 1 Median 0.80497 0.88647 16.863 4 0 Median 1.0036 0.88205 3.1876 3 0 Median 0.84282 0.87155 7.661 2 0 Median 0.937 0.80462 NaN 1 0 Median 24891000 13124000 11767000 2150700 1189900 960770 1747600 790990 956570 13182000 7027900 6154300 336970 168920 168050 7306300 3849500 3456800 167670 96695 70972 15524 3745 16165 80313;80314;80315;80316;80317;80318;80319;80320;80321;80322;80323;80324;80325;80326;80327 81456;81457;81458;81459;81460;81461;81462;81463 81459 8 ILQEAWTEGR GDVILVYGCSSLVSRILQEAWTEGRRFRVV SLVSRILQEAWTEGRRFRVVVVDSRPWLEG R I L G R R 1 1 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 10 0 1201.6091 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 342 351 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 0.0074197 47.823 By MS/MS 1 0.96501 0.83292 NaN 1 Median NaN NaN NaN 0 0 Median 0.96501 0.83292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1555600 748990 806620 0 0 0 1555600 748990 806620 0 0 0 0 0 0 0 0 0 0 0 0 15525 16 16166 80328 81464 81464 1 ILQEDPTNTAAR EAMERYDDAIQLYDRILQEDPTNTAARKRK YDRILQEDPTNTAARKRKIAIRKAQGKNVE R I L A R K 2 1 1 1 0 1 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 12 0 1327.6732 Q15006;H0YAS9 Q15006 113 124 EMC2 ER membrane protein complex subunit 2 yes no 2 0.00066824 91.584 By MS/MS By MS/MS By MS/MS 1 2 2 1.1799 0.98253 8.7514 5 Median 0.8748 0.81658 NaN 1 1 Median 1.1913 0.99212 1.374 2 2 Median NaN NaN NaN 0 0 Median 1.164 0.97068 5.4261 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23992000 11593000 12399000 7589600 4034000 3555500 11314000 5233200 6080600 0 0 0 5088200 2325300 2762900 0 0 0 0 0 0 15526 2909 16167 80329;80330;80331;80332;80333 81465;81466;81467;81468;81469 81466 5 ILQEGVDPK YTTRCLAPMMSEVIRILQEGVDPKKLDSLT MSEVIRILQEGVDPKKLDSLTTSFGFPVGA R I L P K K 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 0 997.54441 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 561 569 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.002528 84.568 By MS/MS By MS/MS By MS/MS 2 1 1 1.1519 1.0036 9.1848 4 Median NaN NaN NaN 0 0 Median 1.1791 1.0144 8.7594 2 0 Median 0.89249 0.88632 NaN 1 1 Median 1.2171 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54978000 27212000 27767000 0 0 0 22180000 10447000 11733000 31048000 16038000 15010000 1750700 727480 1023200 0 0 0 0 0 0 15527 1180 16168 80334;80335;80336;80337 81470;81471;81472;81473 81472 4 ILQEHEQIK EERLRQEAKEREKERILQEHEQIKKKTVRE EREKERILQEHEQIKKKTVRERLEQIKKTE R I L I K K 0 0 0 0 0 2 2 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1136.619 Q14152 Q14152 624 632 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00082911 95.608 By matching By MS/MS By matching 2 3 1 1.1101 1.0592 19.394 5 Median 1.0938 1.0803 6.0453 2 0 Median 1.4859 1.2876 27.607 2 0 Median NaN NaN NaN 0 0 Median 1.0487 0.94364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22238000 9486900 12751000 5653200 2647100 3006100 16247000 6665100 9581900 0 0 0 337790 174680 163110 0 0 0 0 0 0 15528 2860 16169 80338;80339;80340;80341;80342;80343 81474;81475;81476;81477 81476 4 ILQEHEQIKK EERLRQEAKEREKERILQEHEQIKKKTVRE REKERILQEHEQIKKKTVRERLEQIKKTEL R I L K K K 0 0 0 0 0 2 2 0 1 2 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1264.7139 Q14152 Q14152 624 633 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0030788 40.727 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.1996 1.1225 10.511 7 Median 1.143 1.2012 9.7 2 0 Median 1.1832 1.1277 0.65874 2 0 Median 1.1996 1.3528 NaN 1 0 Median 1.067 0.98907 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2182 1.0871 NaN 1 0 Median 5412000 2647000 2765000 1129500 553380 576110 3711400 1852100 1859300 212240 87043 125200 85590 33936 51654 0 0 0 273330 120570 152760 15529 2860 16170 80344;80345;80346;80347;80348;80349;80350 81478;81479;81480;81481;81482 81481 5 ILQELPSVSQETLK DRSLPALKIREELLKILQELPSVSQETLKH KILQELPSVSQETLKHSGIGRAVMYLYKHP K I L L K H 0 0 0 0 0 2 2 0 0 1 3 1 0 0 1 2 1 0 0 1 0 0 14 0 1583.877 Q96ST2;A0A1B0GW95 Q96ST2 640 653 IWS1 Protein IWS1 homolog yes no 2 0.00031726 74.76 By MS/MS By matching By MS/MS By matching By matching 1 1 3 2 1 0.88709 0.88337 16.661 8 Median 0.71712 0.70067 NaN 1 0 Median 0.83658 0.71536 NaN 1 0 Median 0.84801 0.90175 7.3746 3 1 Median 1.0614 0.90924 14.036 2 0 Median 1.0935 1.126 NaN 1 0 Median NaN NaN NaN 0 0 Median 31208000 16583000 14625000 4685900 2289700 2396200 1218400 653720 564650 21580000 11787000 9792800 1873900 946660 927240 1850200 906430 943790 0 0 0 15530 3736 16171 80351;80352;80353;80354;80355;80356;80357;80358 81483;81484;81485;81486 81484 4 ILQEYITQEGHK DELMDFGYPQTTDSKILQEYITQEGHKLET DSKILQEYITQEGHKLETGAPRPPATVTNA K I L H K L 0 0 0 0 0 2 2 1 1 2 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1457.7514 E7ENJ6;Q9BXS5;K7EJL1;K7EPJ8;A0A087WZX7 E7ENJ6 130 141 AP1M1 AP-1 complex subunit mu-1 yes no 2;3 1.3125E-09 175.73 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1.1119 1.0005 26.692 9 Median 1.1926 1.1036 35.638 3 0 Plateau 1.0697 0.90965 0.55759 2 0 Median 1.1922 1.1547 6.2286 2 0 Median 1.3601 1.2214 28.218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86195000 40781000 45414000 27086000 13896000 13191000 11739000 5448600 6289900 26888000 12072000 14816000 20482000 9364100 11118000 0 0 0 0 0 0 15531 864 16172 80359;80360;80361;80362;80363;80364;80365;80366;80367 81487;81488;81489;81490;81491;81492;81493;81494;81495;81496;81497;81498 81494 12 ILQGGVGIPHIR KARHPQLLYESKLYKILQGGVGIPHIRWYG LYKILQGGVGIPHIRWYGQEKDYNVLVMDL K I L I R W 0 1 0 0 0 1 0 3 1 3 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1258.751 U3KPX3;A0A590UJ43;P48729;A0A590UJQ7;E5RG27;D6RGE5;A0A590UK94 U3KPX3 66 77 CSNK1A1 Casein kinase I isoform alpha yes no 3 0.00016519 69.01 By matching By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 0.96515 0.9052 9.9925 7 Median 0.85272 0.84813 NaN 1 0 Median 1.076 0.9052 NaN 1 0 Median 0.83349 0.85382 14.326 2 0 Median 1.1796 1.0438 NaN 1 0 Median 0.83901 0.90068 NaN 1 0 Median 1.186 0.99154 NaN 1 0 Median 21554000 11547000 10007000 3942100 2276000 1666100 2108700 992240 1116500 10279000 5543600 4735600 809420 383690 425730 2552600 1466600 1086000 1861700 884650 977040 15532 481 16173 80368;80369;80370;80371;80372;80373;80374 81499;81500 81500 2 ILQGPHANPVAVPQPGASVQTK FQTTSTNLSLSNKIRILQGPHANPVAVPQP NPVAVPQPGASVQTKGIKPGMPSIFNRRAN R I L T K G 3 0 1 0 0 3 0 2 1 1 1 1 0 0 4 1 1 0 0 3 0 0 22 0 2208.2015 Q6NSI4;B1AQ74 Q6NSI4 627 648 CXorf57 Uncharacterized protein CXorf57 yes no 3 0.042861 17.9 By MS/MS 1 0.27277 0.28053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27277 0.28053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8030100 6166400 1863700 0 0 0 0 0 0 8030100 6166400 1863700 0 0 0 0 0 0 0 0 0 15533 3141 16174 80375 81501 81501 1 ILQHSHGIEEER LVTQRITKYPLLISRILQHSHGIEEERQDL ISRILQHSHGIEEERQDLTTALGLVKELLS R I L E R Q 0 1 0 0 0 1 3 1 2 2 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1446.7215 V9GYM8;Q92974 V9GYM8 446 457 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 3 0.00016972 65.563 By MS/MS 1 1.1237 0.96187 NaN 1 Median NaN NaN NaN 0 0 Median 1.1237 0.96187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2164900 960890 1204000 0 0 0 2164900 960890 1204000 0 0 0 0 0 0 0 0 0 0 0 0 15534 4562 16175 80376 81502;81503 81502 2 ILQIEDSEMSR LNNASSRSHSIFTVKILQIEDSEMSRVIRV FTVKILQIEDSEMSRVIRVSELSLCDLAGS K I L S R V 0 1 0 1 0 1 2 0 0 2 1 0 1 0 0 2 0 0 0 0 0 0 11 0 1319.6391 Q96Q89 Q96Q89 359 369 KIF20B Kinesin-like protein KIF20B yes yes 2 0.00017015 112.75 By MS/MS By matching 2 1 0.94 0.95989 8.8849 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91617 0.9658 0.86807 2 0 Median 0.94 0.82835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10004000 4787400 5216300 0 0 0 0 0 0 8917800 4284100 4633700 1085900 503340 582530 0 0 0 0 0 0 15535 3717 16176 80377;80378;80379 81504 81504 1 ILQLVATGAVR YGRLNLHYAVVSKRKILQLVATGAVRDWDD SKRKILQLVATGAVRDWDDPRLFTLTALRR K I L V R D 2 1 0 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1139.7026 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQQ5;A0A1B0GTT3 P47897 499 509 QARS Glutamine--tRNA ligase yes no 2 0.00011296 126.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.203 1.0917 20.148 6 Median 1.1783 1.1146 NaN 1 0 Median 1.5258 1.317 30.499 2 0 Median 1.0223 1.0941 NaN 1 0 Median 1.0256 0.88354 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2859 1.0893 NaN 1 0 Median 32643000 15427000 17216000 17500000 8813300 8686800 11122000 4711200 6411200 2402700 1099000 1303700 1461800 749940 711840 0 0 0 156150 53844 102300 15536 2356 16177 80380;80381;80382;80383;80384;80385 81505;81506;81507;81508;81509;81510 81506 6 ILQNEPLPER TRQAAKHDAAAKALRILQNEPLPERLEVNG AKALRILQNEPLPERLEVNGRESEEENLNK R I L E R L 0 1 1 0 0 1 2 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 10 0 1207.6561 O95793;A0A087X1A5;Q5JW30;Q5JW28;F6UDC6 O95793 159 168 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 7.8138E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 2 0.78681 0.66716 18.171 11 Median 0.7411 0.72243 17.252 2 0 Median 0.81457 0.69605 7.0103 2 0 Median 0.66773 0.69096 NaN 1 0 Median 0.6617 0.56699 20.67 3 1 Median 0.86312 0.86459 NaN 1 1 Median 0.77529 0.65408 12.473 2 1 Median 56213000 30111000 26102000 13277000 7509000 5768300 13117000 7388100 5728500 4460700 2383900 2076800 7574800 4493600 3081300 8539500 4447800 4091700 9243700 3888500 5355200 15537 1794 16178 80386;80387;80388;80389;80390;80391;80392;80393;80394;80395;80396 81511;81512;81513;81514;81515;81516;81517;81518;81519;81520;81521;81522;81523;81524 81511 13 ILQNYDNK KDVGQWKERGIGDIKILQNYDNKQVRIVMR RGIGDIKILQNYDNKQVRIVMRRDQVLKLC K I L N K Q 0 0 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1006.5084 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2359 2366 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0055542 75.109 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2178 1.0766 18.496 5 Median NaN NaN NaN 0 0 Median 1.2178 1.0708 NaN 1 0 Median 1.1974 1.3121 27.976 2 0 Median 1.1063 1.0463 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5536 1.3331 NaN 1 0 Median 8939000 3958400 4980600 0 0 0 1031100 401470 629600 5871800 2703100 3168600 1090700 484230 606470 0 0 0 945470 369610 575860 15538 2401;525;3762 16179 80397;80398;80399;80400;80401 81525;81526;81527;81528 81526 4 ILQVSFK AMAIASLNGYRLGDKILQVSFKTNKSHK__ NGYRLGDKILQVSFKTNKSHK_________ K I L F K T 0 0 0 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 Q15717 Q15717 314 320 ELAVL1 ELAV-like protein 1 yes yes 2 0.0096554 83.614 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 5 3 1.2206 1.0877 9.9191 15 Median 1.3055 1.2246 NaN 1 0 Median 1.4881 1.2505 3.828 2 0 Median 1.1275 1.0871 NaN 1 0 Median 1.2901 1.1018 2.4059 3 0 Plateau 1.0905 1.0998 9.4413 5 0 Median 1.2206 0.97519 7.1818 3 0 Median 282950000 132540000 150400000 6921500 3127600 3793900 659860 242250 417610 33999000 17580000 16420000 9449200 4052300 5396900 157610000 72423000 85183000 74312000 35120000 39192000 15539 2964 16180 80402;80403;80404;80405;80406;80407;80408;80409;80410;80411;80412;80413;80414;80415;80416 81529;81530;81531;81532;81533;81534;81535;81536;81537;81538;81539;81540;81541;81542;81543 81540 15 ILRPWQSSETR ELARLNGTLREDDNRILRPWQSSETRSITN DDNRILRPWQSSETRSITNTTVCTKCGGAG R I L T R S 0 2 0 0 0 1 1 0 0 1 1 0 0 0 1 2 1 1 0 0 0 0 11 1 1371.7259 Q15637 Q15637 261 271 SF1 Splicing factor 1 yes yes 2;3 1.4381E-08 166.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 9 2 2 1.3992 1.3642 108.14 22 Median 3.081 3.1589 10.94 2 2 Median 0.57105 0.52514 77.164 2 0 Median 1.0865 1.2125 72.537 5 2 Median 1.1303 0.99494 100.11 9 3 Median 11.097 12.119 58.689 2 2 Median 1.3166 1.174 96.663 2 1 Median 775870000 297280000 478590000 44098000 8006100 36092000 4945900 2977800 1968100 360840000 168570000 192270000 246420000 97828000 148590000 101140000 14550000 86590000 18419000 5343800 13075000 15540 2959 16181 80417;80418;80419;80420;80421;80422;80423;80424;80425;80426;80427;80428;80429;80430;80431;80432;80433;80434;80435;80436;80437;80438 81544;81545;81546;81547;81548;81549;81550;81551;81552;81553;81554;81555;81556;81557;81558;81559;81560;81561;81562;81563;81564;81565;81566;81567 81560 24 ILSCGEVIHVK FGDNDPIDVCEIGSKILSCGEVIHVKILGI IGSKILSCGEVIHVKILGILALIDEGETDW K I L V K I 0 0 0 0 1 0 1 1 1 2 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1253.6802 Q9H2U2;D6R967;H0Y9D8;D6RGV9 Q9H2U2 177 187 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 3 0.027386 33.89 By MS/MS 1 2.0859 1.7486 NaN 1 Median NaN NaN NaN 0 0 Median 2.0859 1.7486 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4116100 1121600 2994600 0 0 0 4116100 1121600 2994600 0 0 0 0 0 0 0 0 0 0 0 0 15541 3947 16182 80439 81568 81568 1 ILSFVYPIR GNFDSQVGACGFNSRILSFVYPIRLVRVNE CGFNSRILSFVYPIRLVRVNEDTMELIRGP R I L I R L 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 1 0 0 1 1 0 0 9 0 1106.6488 Q6P1M0 Q6P1M0 409 417 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 2 0.00073077 101.64 By MS/MS By matching 3 2 1.372 1.1663 14.632 5 Median 1.1373 1.126 16.957 3 0 Median 1.5032 1.3048 15.871 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12112000 4949500 7162200 9427000 3920600 5506400 2684700 1028900 1655800 0 0 0 0 0 0 0 0 0 0 0 0 15542 3152 16183 80440;80441;80442;80443;80444 81569;81570 81570 2 ILSGRPPLGFLNPR TPVFGGILSLINEHRILSGRPPLGFLNPRL RILSGRPPLGFLNPRLYQQHGAGLFDVTRG R I L P R L 0 2 1 0 0 0 0 2 0 1 3 0 0 1 3 1 0 0 0 0 0 0 14 1 1535.8936 A0A2R8YGD1;O14773;A0A2R8Y7U1;A0A2R8YD45 A0A2R8YGD1 400 413 TPP1 Tripeptidyl-peptidase 1 yes no 3 0.0039385 34.179 By MS/MS By MS/MS 1 1 0.32473 0.32793 NaN 1 Median 0.32473 0.32793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4579700 3221900 1357800 4579700 3221900 1357800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15543 402 16184 80445;80446 81571;81572;81573 81571 3 ILSGVVTK DKKCPFTGNVSIRGRILSGVVTKMKMQRTI NVSIRGRILSGVVTKMKMQRTIVIRRDYLH R I L T K M 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 8 0 815.51165 M0QZC5;P62280 M0QZC5 72 79 RPS11 40S ribosomal protein S11 yes no 2 0.0034996 92.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1 3 1.2625 1.0979 11.345 13 Median 1.1363 1.067 7.2777 4 0 Median 1.2193 1.0188 1.8956 3 0 Median 1.2625 1.1836 NaN 1 0 Median 1.4171 1.1741 NaN 1 0 Median 1.3945 1.4207 NaN 1 0 Median 1.3522 1.1597 11.738 3 0 Median 180650000 80420000 100230000 80727000 35848000 44879000 54309000 24933000 29376000 20009000 8739800 11269000 3748300 1500700 2247600 11057000 4752000 6304700 10800000 4646800 6152800 15544 1422 16185 80447;80448;80449;80450;80451;80452;80453;80454;80455;80456;80457;80458;80459 81574;81575;81576;81577;81578;81579;81580;81581;81582;81583;81584;81585;81586;81587;81588;81589 81578 16 ILSHGGFR EQQDMVCYTAQTLVRILSHGGFRKILGQEG TAQTLVRILSHGGFRKILGQEGDASYLASE R I L F R K 0 1 0 0 0 0 0 2 1 1 1 0 0 1 0 1 0 0 0 0 0 0 8 0 885.48209 B4DY09;Q12905 B4DY09 282 289 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.034117 49.358 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.2714 1.1394 14.187 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.108 1.1633 25.329 2 0 Median 1.4401 1.2594 14.164 2 0 Median 1.083 1.124 12.79 2 1 Median 1.39 1.0818 NaN 1 0 Median 46945000 22368000 24577000 0 0 0 0 0 0 29184000 15018000 14166000 2195300 861570 1333700 15268000 6372900 8895200 297810 115720 182080 15545 609 16186 80460;80461;80462;80463;80464;80465;80466 81590;81591;81592 81592 3 ILSHGGFRK EQQDMVCYTAQTLVRILSHGGFRKILGQEG AQTLVRILSHGGFRKILGQEGDASYLASEI R I L R K I 0 1 0 0 0 0 0 2 1 1 1 1 0 1 0 1 0 0 0 0 0 0 9 1 1013.577 B4DY09;Q12905 B4DY09 282 290 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.0012735 91.906 By matching By matching By MS/MS By MS/MS 4 1 5 1 1.1382 1.2091 5.7648 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1625 1.2499 7.871 4 0 Median 1.369 1.207 NaN 1 0 Median 1.0892 1.1615 5.1945 5 0 Median 1.3257 1.2184 NaN 1 0 Median 21410000 10067000 11343000 0 0 0 0 0 0 2268700 1042700 1226000 555760 239350 316410 17994000 8522300 9471500 591570 262980 328590 15546 609 16187 80467;80468;80469;80470;80471;80472;80473;80474;80475;80476;80477 81593;81594;81595;81596 81595 4 ILSHLQQDSLK VLMEKPDVVVGTPSRILSHLQQDSLKLRDS TPSRILSHLQQDSLKLRDSLELLVVDEADL R I L L K L 0 0 0 1 0 2 0 0 1 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1280.7089 Q9NY93;G3V0G3;H7C3E9;F8WDT8 Q9NY93 145 155 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 5.7194E-05 99.283 By matching By MS/MS By MS/MS 1 5 4 1.1533 1.1343 25.498 10 Median NaN NaN NaN 0 0 Median 1.409 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.137 1.1164 10.121 5 0 Median 1.2281 1.0211 42.422 4 0 Median 53065000 23886000 29180000 0 0 0 1450400 622860 827500 0 0 0 0 0 0 41657000 18959000 22698000 9958000 4304100 5653900 15547 4173 16188 80478;80479;80480;80481;80482;80483;80484;80485;80486;80487 81597;81598;81599;81600;81601 81598 5 ILSISADIETIGEILKK YNASVSVPDSSGPERILSISADIETIGEIL SISADIETIGEILKKIIPTLEEGLQLPSPT R I L K K I 1 0 0 1 0 0 2 1 0 5 2 2 0 0 0 2 1 0 0 0 0 0 17 1 1842.0714 P61978;Q5T6W2 P61978 87 103 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 1.3235E-13 112.51 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0811 1.1339 16.409 6 Median NaN NaN NaN 0 0 Median 1.0579 0.99749 19.235 2 0 Median 1.0811 1.1356 1.3354 2 0 Median 1.3352 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0046 0.89533 NaN 1 0 Median 12871000 6061100 6810200 0 0 0 3164100 1489600 1674500 9511800 4488700 5023200 99044 37289 61755 0 0 0 96313 45574 50738 15548 2565;3093 16189 80488;80489;80490;80491;80492;80493 81602;81603;81604;81605;81606;81607 81606 6 ILSKPIEVQVGGR FSATFPRAMEALARRILSKPIEVQVGGRSV RRILSKPIEVQVGGRSVVCSDVEQQVIVIE R I L G R S 0 1 0 0 0 1 1 2 0 2 1 1 0 0 1 1 0 0 0 2 0 0 13 1 1394.8245 Q7L014;A0A0C4DG89 Q7L014 574 586 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2;3 3.1188E-07 100.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 4 3 1 3 0.96512 0.99114 11.679 16 Median 0.94142 0.98009 2.22 2 0 Median 0.90742 0.86295 13.35 3 0 Median 0.91727 1.0405 17.263 4 0 Median 0.9739 0.93593 7.499 3 0 Median 1.042 1.1543 NaN 1 0 Median 1.1286 0.9867 5.3281 3 0 Median 92810000 48572000 44239000 13100000 6682000 6418000 4878000 2489100 2388900 62927000 33671000 29256000 6803700 3465800 3338000 2148300 947110 1201200 2953500 1316500 1637000 15549 3216 16190 80494;80495;80496;80497;80498;80499;80500;80501;80502;80503;80504;80505;80506;80507;80508;80509 81608;81609;81610;81611;81612;81613;81614;81615;81616;81617;81618;81619;81620;81621 81612 14 ILSLAAEK ______________________________ ______________________________ K I L E K T 2 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 843.50657 Q9NVI1;F8W7R3;H3BS60;H3BQE2;H3BT54;H3BMG4 Q9NVI1 5 12 FANCI Fanconi anemia group I protein yes no 2 0.043248 54.611 By MS/MS 1 0.13355 0.1124 NaN 1 Median NaN NaN NaN 0 0 Median 0.13355 0.1124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28155000 26397000 1757700 0 0 0 28155000 26397000 1757700 0 0 0 0 0 0 0 0 0 0 0 0 15550 4132 16191 80510 81622 81622 1 ILSLLEGQK SPDYERIINLRHFKRILSLLEGQKIAFGGE LRHFKRILSLLEGQKIAFGGETDEATRYIA R I L Q K I 0 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 9 0 999.59645 P51648;J3QRD1;I3L1M4;J3QS00 P51648 291 299 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 0.0004206 130.27 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 3 1 3 1 3 1.3621 1.1408 21.068 13 Median 0.96495 0.92479 14.743 2 0 Median 1.3689 1.1665 17.631 3 0 Median 1.0584 1.0327 NaN 1 0 Median 1.3621 1.1408 27.567 3 0 Median 0.91468 0.94609 NaN 1 0 Median 1.5339 1.2776 18.411 3 0 Median 37986000 15978000 22008000 10319000 5220700 5098600 6117700 2444900 3672800 7363700 3393600 3970000 9354900 2900900 6454000 550040 249380 300660 4280500 1768100 2512400 15551 1349 16192 80511;80512;80513;80514;80515;80516;80517;80518;80519;80520;80521;80522;80523 81623;81624;81625;81626 81624 4 ILSMAEGIK HVFLGCRYPQKVMDKILSMAEGIKVTDAPT QKVMDKILSMAEGIKVTDAPTYTTRDELVA K I L I K V 1 0 0 0 0 0 1 1 0 2 1 1 1 0 0 1 0 0 0 0 0 0 9 0 960.5314 Q9NXV6;J3KNE1;D6RGD2 Q9NXV6 100 108 CDKN2AIP CDKN2A-interacting protein yes no 2 0.010817 47.869 By MS/MS 1 1.1597 1.1963 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1597 1.1963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7482100 3525000 3957100 0 0 0 0 0 0 7482100 3525000 3957100 0 0 0 0 0 0 0 0 0 15552 4169 16193 80524 81627 81627 1 ILSPPDISR PEQCEAVSKFIGECKILSPPDISRFATSLV FIGECKILSPPDISRFATSLVDNSVPLLRA K I L S R F 0 1 0 1 0 0 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 0 9 0 996.5604 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4458 4466 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.022094 61.962 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15553 189 16194 80525 81628 81628 1 ILSQSTDSLNMR IAGHFNDESPLGLRRILSQSTDSLNMRNRT LRRILSQSTDSLNMRNRTLSVESLIDEAEV R I L M R N 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 3 1 0 0 0 0 0 12 0 1363.6766 V9GYM8;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 215 226 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 5.6831E-05 125.56 By MS/MS By matching 1 1 1.3172 1.1978 10.194 2 Median 1.3312 1.2873 NaN 1 0 Median 1.3034 1.1145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6858900 2599900 4259000 4262800 1572100 2690700 2596100 1027800 1568300 0 0 0 0 0 0 0 0 0 0 0 0 15554 4562 16195 80526;80527 81629;81630 81629 2 ILSSDDYGK WEMAEEEGWIREKEKILSSDDYGKDLTSVM IREKEKILSSDDYGKDLTSVMRLLSKHRAF K I L G K D 0 0 0 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 1 0 0 0 9 0 996.47639 Q01082;A0A087WUZ3;F8W6C1 Q01082 660 668 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.012642 60.91 By MS/MS By MS/MS 1 1 0.88479 0.87282 27.496 2 Median NaN NaN NaN 0 0 Median 0.8229 0.7186 NaN 1 1 Median 0.95134 1.0601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7787200 3890000 3897200 0 0 0 5371100 3190800 2180300 2416100 699260 1716900 0 0 0 0 0 0 0 0 0 15555 2681 16196 80528;80529 81631;81632 81632 2 ILSSDDYGKDLTSVMR WEMAEEEGWIREKEKILSSDDYGKDLTSVM LSSDDYGKDLTSVMRLLSKHRAFEDEMSGR K I L M R L 0 1 0 3 0 0 0 1 0 1 2 1 1 0 0 3 1 0 1 1 0 0 16 1 1798.8771 Q01082;A0A087WUZ3;F8W6C1 Q01082 660 675 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 4.1166E-46 222.25 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 5 1 2 2 1.0395 1.0666 28.401 13 Median 0.89806 0.91253 41.628 2 0 Median 1.1162 1.0318 NaN 1 0 Median 0.9129 1.0933 9.9566 5 2 Median 0.93305 0.99311 NaN 1 0 Median 1.3977 1.5833 41.678 2 0 Median 0.96376 0.85141 31.862 2 0 Median 221900000 114210000 107690000 25277000 11580000 13696000 15146000 7374400 7772100 166730000 87697000 79038000 90584 50356 40228 14037000 7196900 6840300 611020 308550 302470 15556 2681 16197 80530;80531;80532;80533;80534;80535;80536;80537;80538;80539;80540;80541;80542 81633;81634;81635;81636;81637;81638;81639;81640;81641 81635 9 ILSTIDR TAIVGSTTGSNYYVRILSTIDRELLKPNAS TGSNYYVRILSTIDRELLKPNASVALHKHS R I L D R E 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 7 0 816.47052 P43686 P43686 115 121 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.014584 73.975 By MS/MS 1 1.4735 1.2408 NaN 1 Median NaN NaN NaN 0 0 Median 1.4735 1.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8477600 3635800 4841700 0 0 0 8477600 3635800 4841700 0 0 0 0 0 0 0 0 0 0 0 0 15557 2327 16198 80543 81642 81642 1 ILSTIDRELLKPNASVALHK TAIVGSTTGSNYYVRILSTIDRELLKPNAS DRELLKPNASVALHKHSNALVDVLPPEADS R I L H K H 2 1 1 1 0 0 1 0 1 2 4 2 0 0 1 2 1 0 0 1 0 0 20 2 2217.2845 P43686 P43686 115 134 PSMC4 26S protease regulatory subunit 6B yes yes 4 0.0020662 26.237 By MS/MS By matching 2 1 1.0865 1.1569 23.828 3 Median 0.99113 1.0811 9.5851 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4709 1.6059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19742000 7625600 12116000 17581000 6702200 10879000 0 0 0 0 0 0 2160800 923350 1237400 0 0 0 0 0 0 15558 2327 16199 80544;80545;80546 81643;81644 81643 2 ILSVQGTEPLVLFK LDKVFKATLSAEVYRILSVQGTEPLVLFKE RILSVQGTEPLVLFKEGAVRGLEALLADPQ R I L F K E 0 0 0 0 0 1 1 1 0 1 3 1 0 1 1 1 1 0 0 2 0 0 14 0 1542.9021 Q9H8H0;J3QLQ6 Q9H8H0 112 125 NOL11 Nucleolar protein 11 yes no 2 0.0024852 42.743 By matching By MS/MS By matching By MS/MS By matching 1 1 1 6 4 1.0021 0.97773 41.135 13 Median NaN NaN NaN 0 0 Median 1.0831 0.97472 NaN 1 0 Median 0.93571 0.99435 NaN 1 0 Median 1.6564 1.4327 NaN 1 0 Median 1.052 1.1059 33.19 6 0 Median 0.97374 0.8326 52.406 4 0 Median 21675000 11526000 10149000 0 0 0 514140 196850 317290 4143500 2305600 1837900 109470 53440 56031 13177000 6584600 6592800 3730100 2385600 1344500 15559 3990 16200 80547;80548;80549;80550;80551;80552;80553;80554;80555;80556;80557;80558;80559 81645;81646;81647;81648;81649 81648 5 ILSYIGSHR LKWELELKRWCPGLKILSYIGSHRELKAKR WCPGLKILSYIGSHRELKAKRQEWAEPNSF K I L H R E 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 9 0 1044.5716 Q96L91 Q96L91 1168 1176 EP400 E1A-binding protein p400 yes yes 2 0.0054443 71.501 By MS/MS 1 1.0214 1.1346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0214 1.1346 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2292800 1155300 1137500 0 0 0 0 0 0 2292800 1155300 1137500 0 0 0 0 0 0 0 0 0 15560 3700 16201 80560 81650 81650 1 ILTATIENNR DYSPYYKTIEELRDKILTATIENNRVILEI ELRDKILTATIENNRVILEIDNARLAADDF K I L N R V 1 1 2 0 0 0 1 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1143.6248 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9 K7ERE3 166 175 KRT13 Keratin, type I cytoskeletal 13 yes no 2 0.0014923 79.906 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15561 736 16202 80561 81651 81651 1 ILTATVDNANILLQIDNAR DYSQYYRTIEELQNKILTATVDNANILLQI TVDNANILLQIDNARLAADDFRTKFETEQA K I L A R L 3 1 3 2 0 1 0 0 0 3 3 0 0 0 0 0 2 0 0 1 0 0 19 0 2067.1324 CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 145 163 KRT17 Keratin, type I cytoskeletal 17 yes no 2 8.4346E-18 128.9 By matching By MS/MS By matching By MS/MS 2 1 1 1 1.1749 1.0458 30.804 5 Median NaN NaN NaN 0 0 Median 0.91069 0.80733 36.596 2 0 Median 1.314 1.2964 NaN 1 0 Median 0.87238 0.76703 NaN 1 0 Median 1.1814 1.1887 NaN 1 1 Median NaN NaN NaN 0 0 Median 14375000 5684800 8690300 0 0 0 853140 395790 457350 11387000 4397900 6989500 60066 31608 28458 2074500 859490 1215000 0 0 0 + 15562 768 16203 80562;80563;80564;80565;80566 81652;81653;81654 81653 3 ILTATVDNANVLLQIDNAR DYSPYFKTIEDLRNKILTATVDNANVLLQI TVDNANVLLQIDNARLAADDFRTKYETELN K I L A R L 3 1 3 2 0 1 0 0 0 2 3 0 0 0 0 0 2 0 0 2 0 0 19 0 2053.1168 P02533;CON__P02533 P02533 176 194 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.00051799 51.211 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1255800 1255800 0 0 0 0 0 0 0 0 0 0 0 0 0 1255800 1255800 0 0 0 0 + 15563 739 16204 80567 81655 81655 1 ILTDIMWPIIAK KVLGSRVFGNKKQLKILTDIMWPIIAKLAR QLKILTDIMWPIIAKLAREEMDRAVAEGKR K I L A K L 1 0 0 1 0 0 0 0 0 4 1 1 1 0 1 0 1 1 0 0 0 0 12 0 1412.8101 Q13057 Q13057 439 450 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.0076677 38.293 By MS/MS By MS/MS By matching 3 2 1 1.2257 1.1169 42.562 6 Median 1.138 1.095 26.104 3 0 Plateau 1.392 1.1934 6.5853 2 0 Median 2.4549 2.536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10536000 4397400 6138700 3523300 1652500 1870800 6878000 2701800 4176100 134870 43055 91812 0 0 0 0 0 0 0 0 0 15564 2783 16205 80568;80569;80570;80571;80572;80573 81656;81657 81656 2 ILTDKLK EKYSQKEDKYEEEIKILTDKLKEAETRAEF DKYEEEIKILTDKLKEAETRAEFAERSVAK K I L L K E 0 0 0 1 0 0 0 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 7 1 829.5273 J3KN67;A0A2R2Y2Q3;P06753;A0A494C034 J3KN67 228 234 TPM3 Tropomyosin alpha-3 chain yes no 2 0.025609 97.068 By MS/MS By matching By matching By matching By matching 1 4 1 1 1 1.1596 1.1725 21.709 8 Median 1.1506 1.1168 NaN 1 0 Median 1.2102 1.1244 24.493 4 0 Median 0.92423 0.92773 NaN 1 0 Median 1.7261 1.5157 NaN 1 0 Median 1.1687 1.2309 NaN 1 0 Median NaN NaN NaN 0 0 Median 25299000 11882000 13416000 16448000 8066600 8381700 4163200 1641200 2522100 2857200 1423300 1434000 596290 175450 420840 1233700 575870 657850 0 0 0 15565 1303 16206 80574;80575;80576;80577;80578;80579;80580;80581 81658 81658 1 ILTDSIQR ENGYIYHTKYDTADRILTDSIQRAGDNILA KYDTADRILTDSIQRAGDNILAVLKHLATS R I L Q R A 0 1 0 1 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 8 0 944.5291 Q7Z2K6;E7ER77;A0A0C4DGF0 Q7Z2K6 363 370 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2 0.0022962 111.04 By matching By MS/MS 1 2 1.2475 1.0523 1.0567 3 Median 1.0465 1.0523 NaN 1 0 Median 1.2771 1.0572 1.4465 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26418000 10633000 15785000 4152000 1980600 2171400 22266000 8652500 13613000 0 0 0 0 0 0 0 0 0 0 0 0 15566 883 16207 80582;80583;80584 81659 81659 1 ILTDYGFEGHPFR DMFGVFFANHPDLRRILTDYGFEGHPFRKD RRILTDYGFEGHPFRKDFPLSGYVELRYDD R I L F R K 0 1 0 1 0 0 1 2 1 1 1 0 0 2 1 0 1 0 1 0 0 0 13 0 1550.7518 O75489 O75489 187 199 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 3 0.00020989 65.563 By MS/MS By MS/MS 1 1 1.0722 0.9641 22.017 2 Median 0.86889 0.8251 NaN 1 0 Median 1.3232 1.1265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18771000 10175000 8595800 17681000 9663600 8017700 1089900 511810 578130 0 0 0 0 0 0 0 0 0 0 0 0 15567 1678 16208 80585;80586 81660;81661;81662 81660 3 ILTDYGFEGHPFRK DMFGVFFANHPDLRRILTDYGFEGHPFRKD RILTDYGFEGHPFRKDFPLSGYVELRYDDE R I L R K D 0 1 0 1 0 0 1 2 1 1 1 1 0 2 1 0 1 0 1 0 0 0 14 1 1678.8467 O75489 O75489 187 200 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2;3;4 0.00017813 75.294 By MS/MS By MS/MS 3 2 0.80231 0.8382 32.066 5 Median 0.80231 0.8382 5.5002 3 1 Median 0.85013 0.81235 63.463 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66425000 35475000 30950000 62678000 33631000 29048000 3746600 1844700 1901900 0 0 0 0 0 0 0 0 0 0 0 0 15568 1678 16209 80587;80588;80589;80590;80591 81663;81664;81665;81666 81663 4 ILTEAEIDAHLVALAERD EIEVGVVTVENPKFRILTEAEIDAHLVALA EAEIDAHLVALAERD_______________ R I L R D - 4 1 0 2 0 0 3 0 1 2 3 0 0 0 0 0 1 0 0 1 0 0 18 1 1978.0371 G3V5Z7;P60900;H0YJC4 G3V5Z7 235 252 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 3 0.078846 2.6697 By MS/MS 1 1.322 1.1179 NaN 1 Median NaN NaN NaN 0 0 Median 1.322 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878200 1480400 2397900 0 0 0 3878200 1480400 2397900 0 0 0 0 0 0 0 0 0 0 0 0 15569 1122 16210 80592 81667 81667 1 ILTFDQLALDSPK VTSRARSRILRAGGKILTFDQLALDSPKGC GKILTFDQLALDSPKGCGTVLLSGPRKGRE K I L P K G 1 0 0 2 0 1 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1459.7922 J3QQ67;Q07020;G3V203;H0YHA7;F8VUA6 J3QQ67 122 134 RPL18 60S ribosomal protein L18 yes no 2 3.8663E-07 164.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 2 1 2 5 5 0.96805 0.84592 43.727 21 Median 0.85901 0.82037 85.143 6 0 Median 0.98266 0.8234 1.3746 2 0 Median 0.99157 0.93027 NaN 1 0 Median 0.89554 0.79593 6.9426 2 1 Median 0.84044 0.94894 11.074 5 3 Median 1.1622 0.95146 6.9003 5 0 Median 666670000 327810000 338860000 178920000 88332000 90589000 61076000 29658000 31418000 53473000 26083000 27390000 4044200 2071100 1973200 220250000 111250000 108990000 148910000 70412000 78500000 15570 1342 16211 80593;80594;80595;80596;80597;80598;80599;80600;80601;80602;80603;80604;80605;80606;80607;80608;80609;80610;80611;80612;80613 81668;81669;81670;81671;81672;81673;81674;81675;81676;81677;81678;81679;81680;81681;81682;81683;81684;81685;81686;81687;81688;81689;81690;81691;81692;81693;81694;81695;81696;81697;81698;81699 81684 32 ILTGGADKNVVVFDK PGILALDLCPSDTNKILTGGADKNVVVFDK ILTGGADKNVVVFDKSSEQILATLKGHTKK K I L D K S 1 0 1 2 0 0 0 2 0 1 1 2 0 1 0 0 1 0 0 3 0 0 15 1 1574.8668 Q9UMS4 Q9UMS4 237 251 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 7.0375E-09 114.72 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 3 1 1.2839 1.281 33.442 12 Median 1.3892 1.3122 6.1551 3 0 Median 1.6627 1.5672 NaN 1 0 Median 1.0104 1.0475 0.78306 2 0 Median 1.2988 1.2983 1.9112 2 0 Median 1.7875 1.9087 47.14 3 0 Plateau 0.76079 0.64952 NaN 1 0 Median 273980000 123040000 150940000 39333000 16020000 23313000 1134200 407330 726850 172220000 83722000 88494000 19356000 8480700 10876000 41190000 13985000 27205000 750770 419880 330900 15571 4334 16212 80614;80615;80616;80617;80618;80619;80620;80621;80622;80623;80624;80625 81700;81701;81702;81703;81704;81705;81706;81707;81708;81709;81710;81711;81712;81713 81707 14 ILTGLNYEAPK ITNDEPIPFWTFLSRILTGLNYEAPKYHIP FLSRILTGLNYEAPKYHIPYWVAYYLALLL R I L P K Y 1 0 1 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1217.6656 Q15738 Q15738 282 292 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 2 0.00014501 90.15 By MS/MS By matching By MS/MS 1 1 1 1.0424 1.0232 4.3838 3 Median 1.0424 0.96279 NaN 1 0 Median 1.1876 1.0232 NaN 1 0 Median 0.97608 1.0483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24608000 11587000 13021000 18047000 8511900 9534700 2936200 1289500 1646700 3625100 1785200 1839900 0 0 0 0 0 0 0 0 0 15572 2966 16213 80626;80627;80628 81714;81715;81716 81714 3 ILTGTDAPK MSDLPVKVIHVESGKILTGTDAPKAGQLEA HVESGKILTGTDAPKAGQLEAWLEMNPGYE K I L P K A 1 0 0 1 0 0 0 1 0 1 1 1 0 0 1 0 2 0 0 0 0 0 9 0 914.5073 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y7R0 P51532 627 635 SMARCA4 Transcription activator BRG1 yes no 2 0.002652 70.525 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.892 0.86971 8.0299 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79979 0.88612 NaN 1 0 Median 1.1053 1.0054 NaN 1 0 Median 0.80808 0.85361 NaN 1 1 Median 0.98464 0.84377 NaN 1 0 Median 14220000 7547200 6672600 0 0 0 0 0 0 8415200 4497300 3917900 1306400 612170 694280 2494000 1423800 1070200 2004200 1014000 990270 15573 366 16214 80629;80630;80631;80632 81717;81718;81719;81720;81721;81722;81723 81718 7 ILTHVAEMQGK QREEMQAQLRELESKILTHVAEMQGKSARE LESKILTHVAEMQGKSAREAAASLSLTLQK K I L G K S 1 0 0 0 0 1 1 1 1 1 1 1 1 0 0 0 1 0 0 1 0 0 11 0 1225.6489 Q9UH99 Q9UH99 492 502 SUN2 SUN domain-containing protein 2 yes yes 2;3 0.00025393 61.815 By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 0.9723 0.92739 29.822 6 Median 1.5544 1.5938 NaN 1 0 Median 1.2037 1.087 NaN 1 0 Median 0.89033 0.92739 20.069 2 0 Median 0.9023 0.78493 NaN 1 0 Median 0.68807 0.71153 NaN 1 1 Median NaN NaN NaN 0 0 Median 20047000 10706000 9341100 1472200 612770 859380 732980 351930 381060 13253000 6737700 6515600 596170 395770 200400 3992200 2607500 1384700 0 0 0 15574 4271 16215 80633;80634;80635;80636;80637;80638 81724;81725;81726 81725 3 ILTINEDGSLGLK DLQKKKKRKQRSPAKILTINEDGSLGLKTP AKILTINEDGSLGLKTPKSHVCEHCNAAFR K I L L K T 0 0 1 1 0 0 1 2 0 2 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1371.7609 Q9UQR1 Q9UQR1 154 166 ZNF148 Zinc finger protein 148 yes yes 2 0.00027712 78.655 By MS/MS By matching By matching By matching 1 1 1 1 0.92829 0.91157 22.236 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90165 0.98968 NaN 1 0 Median 0.89053 0.77315 NaN 1 0 Median 1.2887 1.2802 NaN 1 0 Median 0.95572 0.83963 NaN 1 0 Median 3927900 2098000 1829900 0 0 0 0 0 0 3276300 1803100 1473200 88311 35349 52962 496010 228990 267030 67230 30549 36681 15575 4364 16216 80639;80640;80641;80642 81727;81728 81728 2 ILTIYPQVLHSLMEAR LAYQRFRSRLQNFSRILTIYPQVLHSLMEA LTIYPQVLHSLMEARWNHELAGCEMTLDAF R I L A R W 1 1 0 0 0 1 1 0 1 2 3 0 1 0 1 1 1 0 1 1 0 0 16 0 1883.0339 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 3880 3895 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.012807 22.475 By MS/MS By matching 1 1 0.93515 0.86855 17.342 2 Median 0.76147 0.76832 NaN 1 0 Median 1.1484 0.98187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2709100 1388100 1321000 1752500 953090 799380 956640 435030 521610 0 0 0 0 0 0 0 0 0 0 0 0 15576 189 16217 80643;80644 81729;81730 81730 2 ILTLENQVYSMK LGEEKDNRVKEAEEKILTLENQVYSMKAEL EEKILTLENQVYSMKAELETKKKELEHVNL K I L M K A 0 0 1 0 0 1 1 0 0 1 2 1 1 0 0 1 1 0 1 1 0 0 12 0 1437.7538 Q13439;H0Y6I0 Q13439 1587 1598 GOLGA4 Golgin subfamily A member 4 yes no 2 0.0018857 50.108 By MS/MS By matching By matching 1 1 1 1.167 1.126 39.559 3 Plateau 1.167 1.126 NaN 1 0 Median 1.2022 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54644 0.54736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8097500 2720500 5377000 7458200 2505600 4952600 551030 176490 374540 0 0 0 88348 38408 49940 0 0 0 0 0 0 15577 1156 16218 80645;80646;80647 81731 81731 1 ILTNFTGVMPPQFK NLKVDMLSEINIAPRILTNFTGVMPPQFKK RILTNFTGVMPPQFKKDLDSYLKTRSPVTF R I L F K K 0 0 1 0 0 1 0 1 0 1 1 1 1 2 2 0 2 0 0 1 0 0 14 0 1591.8432 A5YKK6 A5YKK6 2164 2177 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.00034222 73.721 By MS/MS By MS/MS 1 2 1.1205 1.1431 55.917 3 Plateau 0.73652 0.70775 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.032 1.1323 69.148 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10896000 5009000 5887400 5749100 3076000 2673100 0 0 0 5147400 1933000 3214400 0 0 0 0 0 0 0 0 0 15578 503 16219 80648;80649;80650 81732;81733;81734 81732 3 ILTPLVSLDTPGK ELPDLEDLMKRENQKILTPLVSLDTPGKAT QKILTPLVSLDTPGKATVQVVILADPDGHE K I L G K A 0 0 0 1 0 0 0 1 0 1 3 1 0 0 2 1 2 0 0 1 0 0 13 0 1352.7915 Q9HC38;F6TLX2;I3L1I0 Q9HC38 240 252 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 9.0117E-05 85.355 By MS/MS By MS/MS By MS/MS 2 1 1 0.85886 0.81997 7.7997 4 Median 0.85825 0.79498 7.701 2 0 Median 1.0783 0.90576 NaN 1 0 Median 0.83202 0.80093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68102000 35334000 32769000 52969000 28394000 24575000 13223000 5797400 7426100 1910100 1142800 767310 0 0 0 0 0 0 0 0 0 15579 4025 16220 80651;80652;80653;80654 81735;81736;81737;81738;81739;81740;81741;81742;81743 81736 9 ILTTASSHEFEHTK IRQELELSVKKELEKILTTASSHEFEHTKK KILTTASSHEFEHTKKDLDGFRKLFHRFLQ K I L T K K 1 0 0 0 0 0 2 0 2 1 1 1 0 1 0 2 3 0 0 0 0 0 14 0 1599.7893 A0A087WYS1;E7EUC7;Q16851;C9JNZ1;C9JTZ5;C9JUW1;C9JWG0;C9JVG3;C9JQU9;F2Z3H1 A0A087WYS1 39 52 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 3 6.211E-05 76.759 By MS/MS By MS/MS 1 1 1.464 1.328 7.1472 2 Median 1.4476 1.3968 NaN 1 0 Median 1.4806 1.2625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6051400 2462000 3589500 2267400 952820 1314600 3784000 1509200 2274900 0 0 0 0 0 0 0 0 0 0 0 0 15580 86 16221 80655;80656 81744;81745;81746 81745 3 ILTTASSHEFEHTKK IRQELELSVKKELEKILTTASSHEFEHTKK ILTTASSHEFEHTKKDLDGFRKLFHRFLQE K I L K K D 1 0 0 0 0 0 2 0 2 1 1 2 0 1 0 2 3 0 0 0 0 0 15 1 1727.8842 A0A087WYS1;E7EUC7;Q16851;C9JNZ1;C9JTZ5;C9JUW1;C9JWG0;C9JVG3;C9JQU9;F2Z3H1 A0A087WYS1 39 53 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 3;4 1.6255E-05 82.55 By matching By MS/MS 1 2 1.2572 1.1831 4.1171 3 Median 1.223 1.1769 NaN 1 0 Median 1.3028 1.2244 4.8462 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10827000 4797800 6029300 3489000 1475200 2013900 7338200 3322700 4015500 0 0 0 0 0 0 0 0 0 0 0 0 15581 86 16222 80657;80658;80659 81747;81748;81749 81748 3 ILTTEGR FGVYPNVCYHKEKRKILTTEGRNALIHKSS CYHKEKRKILTTEGRNALIHKSSVNCPFSS K I L G R N 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 7 0 788.43922 Q08211 Q08211 1012 1018 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0059834 100.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7352900 0 7352900 0 0 0 3080700 0 3080700 2045200 0 2045200 0 0 0 1815000 0 1815000 412020 0 412020 15582 2736 16223 80660;80661;80662;80663 81750;81751;81752;81753 81751 4 ILTTIEDLDQK DLMKKKRIVENDKSKILTTIEDLDQKKNQA DKSKILTTIEDLDQKKNQALNIAWQKVNKD K I L Q K K 0 0 0 2 0 1 1 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1287.6922 O95347;A0A0C4DGE5 O95347 1015 1025 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.00013635 89.247 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0432 0.93581 21.172 6 Median 1.317 1.2857 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84241 0.90235 6.9428 2 0 Median 1.0432 0.91647 1.1593 2 0 Median 1.2144 1.4311 NaN 1 0 Median NaN NaN NaN 0 0 Median 27969000 12948000 15021000 2879800 1080700 1799200 0 0 0 15563000 7287800 8275500 7000900 3420100 3580800 2524600 1159200 1365400 0 0 0 15583 1766 16224 80664;80665;80666;80667;80668;80669 81754;81755;81756;81757;81758;81759 81754 6 ILTTIEDLDQKK DLMKKKRIVENDKSKILTTIEDLDQKKNQA KSKILTTIEDLDQKKNQALNIAWQKVNKDF K I L K K N 0 0 0 2 0 1 1 0 0 2 2 2 0 0 0 0 2 0 0 0 0 0 12 1 1415.7872 O95347;A0A0C4DGE5 O95347 1015 1026 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 7.0385E-06 119.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.1135 1.1427 7.4563 9 Median 1.0555 1.1072 15.334 2 0 Median 1.1379 1.0653 5.4025 2 0 Median 1.0273 1.1968 1.0553 2 0 Median 1.1797 1.1237 2.3743 2 0 Median 1.1135 1.193 NaN 1 0 Median NaN NaN NaN 0 0 Median 86446000 40302000 46144000 17661000 8123200 9538300 3988400 1750300 2238100 46096000 21199000 24897000 14112000 6419600 7692800 4588000 2809700 1778300 0 0 0 15584 1766 16225 80670;80671;80672;80673;80674;80675;80676;80677;80678 81760;81761;81762;81763;81764;81765;81766;81767;81768;81769;81770;81771 81771 12 ILTTNTWSSELSK QALCAVYEHWVPREKILTTNTWSSELSKLA EKILTTNTWSSELSKLAANAFLAQRISSIN K I L S K L 0 0 1 0 0 0 1 0 0 1 2 1 0 0 0 3 3 1 0 0 0 0 13 0 1478.7617 O60701 O60701 208 220 UGDH UDP-glucose 6-dehydrogenase yes yes 2 3.276E-05 91.936 By MS/MS By matching By matching 1 2 1 1.0576 1.0338 19.906 4 Median 1.2144 1.1296 NaN 1 0 Median 1.0563 0.91948 29.906 2 0 Median 0.92112 0.94613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13825000 6386700 7438100 10282000 4745900 5535800 1728500 726370 1002100 1814600 914440 900180 0 0 0 0 0 0 0 0 0 15585 1627 16226 80679;80680;80681;80682 81772;81773 81772 2 ILTTSEDSNAQEIK TISHAGHALAPKDKKILTTSEDSNAQEIKD KILTTSEDSNAQEIKDIYGLNGQIEHKLAF K I L I K D 1 0 1 1 0 1 2 0 0 2 1 1 0 0 0 2 2 0 0 0 0 0 14 0 1547.7679 B5MDU6;Q9H6V9;B5MCE2;B4DRG3 B5MDU6 94 107 LDAH;C2orf43;FLJ21820 UPF0554 protein C2orf43 yes no 2 0.0016261 47.559 By MS/MS 1 1.7248 1.4601 NaN 1 Median NaN NaN NaN 0 0 Median 1.7248 1.4601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1351300 483070 868190 0 0 0 1351300 483070 868190 0 0 0 0 0 0 0 0 0 0 0 0 15586 625 16227 80683 81774 81774 1 ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR DRKLILDSARATKGRILTVEDHYYEGGIGE VGEPGITVTHLAVNRVPRSGKPAELLKMFG R I L N R V 3 1 1 1 0 0 4 5 2 3 2 0 0 0 1 2 3 0 2 6 0 0 36 0 3751.9057 P29401;A0A0B4J1R6 P29401 556 591 TKT Transketolase yes no 4;5 1.3859E-23 67.198 By MS/MS By MS/MS 1 2 0.76545 0.67911 8.2726 3 Plateau 0.67364 0.64391 NaN 1 0 Median 0.72329 0.62618 11.475 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31743000 16161000 15583000 8962200 5031600 3930600 22781000 11129000 11652000 0 0 0 0 0 0 0 0 0 0 0 0 15587 2173 16228 80684;80685;80686 81775;81776;81777;81778;81779;81780;81781 81777 6 ILTYPNLQSIVK I L V K 0 0 1 0 0 1 0 0 0 2 2 1 0 0 1 1 1 0 1 1 0 0 12 0 1387.8075 REV__Q9HAR2 yes no 2 0.026764 29.81 By MS/MS 1 0.88597 0.91018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88597 0.91018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 568380000 302130000 266250000 0 0 0 0 0 0 568380000 302130000 266250000 0 0 0 0 0 0 0 0 0 + 15588 4517 16229 80687 81782 81782 1 ILVAEGTR ATVGFESLEECYMAKILVAEGTRDVPIGAI EECYMAKILVAEGTRDVPIGAIICITVGKP K I L T R D 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 0 857.49707 P10515;E9PEJ4 P10515 148 155 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.004801 79.469 By MS/MS By MS/MS 1 1 1.1852 1.0777 28.816 2 Median 0.91947 0.87905 NaN 1 0 Median 1.5277 1.3213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21166000 9183500 11983000 8886000 4730700 4155300 12280000 4452800 7827500 0 0 0 0 0 0 0 0 0 0 0 0 15589 1938 16230 80688;80689 81783;81784;81785 81783 3 ILVAGDSMDSVK GSREMGEAFAADIPRILVAGDSMDSVKQSA IPRILVAGDSMDSVKQSAALCLLRLYKASP R I L V K Q 1 0 0 2 0 0 0 1 0 1 1 1 1 0 0 2 0 0 0 2 0 0 12 0 1233.6275 O95782 O95782 154 165 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.00074852 61.353 By MS/MS By matching By MS/MS 1 1 1 0.96105 0.9406 3.5324 3 Median 0.96105 0.92968 NaN 1 0 Median 1.135 0.99328 NaN 1 0 Median 0.86069 0.9406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25769000 13255000 12513000 12050000 6137300 5912900 4143900 2062100 2081800 9574500 5056200 4518400 0 0 0 0 0 0 0 0 0 15590 1793 16231 80690;80691;80692 81786;81787 81786 2 ILVAQGGLGGK ENGKIIGELNKENDRILVAQGGLGGKLLTN ENDRILVAQGGLGGKLLTNFLPLKGQKRII R I L G K L 1 0 0 0 0 1 0 4 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1011.6077 C9J8R7;C9JNI1;A4D1E9 C9J8R7 107 117 GTPBP10 GTP-binding protein 10 yes no 2 0.0071224 61.999 By MS/MS 1 1.2134 1.3315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2134 1.3315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2540000 1274000 1266100 0 0 0 0 0 0 2540000 1274000 1266100 0 0 0 0 0 0 0 0 0 15591 502 16232 80693 81788 81788 1 ILVATNLFGR ERLSRYQQFKDFQRRILVATNLFGRGMDIE DFQRRILVATNLFGRGMDIERVNIAFNYDM R I L G R G 1 1 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1102.6499 H0Y400;O00148;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3 Q13838 340 349 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 4.1715E-06 155.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 10 11 8 8 4 1.2926 1.1857 16.76 48 Median 1.1871 1.1333 12.755 8 0 Median 1.3726 1.1589 19.475 10 0 Median 1.1988 1.2141 25.986 10 1 Median 1.4093 1.2189 9.6085 8 0 Median 1.2084 1.248 9.1751 8 0 Median 1.3761 1.1511 8.1638 4 0 Median 3937100000 1750300000 2186800000 42385000 19897000 22488000 43436000 18418000 25018000 2084700000 938260000 1146400000 1540400000 675410000 865010000 188400000 83417000 104990000 37785000 14899000 22886000 15592 2842;1441;1146 16233 80694;80695;80696;80697;80698;80699;80700;80701;80702;80703;80704;80705;80706;80707;80708;80709;80710;80711;80712;80713;80714;80715;80716;80717;80718;80719;80720;80721;80722;80723;80724;80725;80726;80727;80728;80729;80730;80731;80732;80733;80734;80735;80736;80737;80738;80739;80740;80741;80742 81789;81790;81791;81792;81793;81794;81795;81796;81797;81798;81799;81800;81801;81802;81803;81804;81805;81806;81807;81808;81809;81810;81811;81812;81813;81814;81815;81816;81817;81818;81819;81820;81821;81822;81823;81824;81825;81826;81827;81828;81829;81830;81831;81832;81833;81834;81835;81836;81837 81801 49 ILVDALQK KRYGEDSEQFRDASKILVDALQKFADDMYS QFRDASKILVDALQKFADDMYSLYGGNAVV K I L Q K F 1 0 0 1 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GTU8;A0A1B0GWJ8;H7C3E1;B7Z413;B7Z1I9;A0A1B0GVC7;A0A1B0GU12;A0A1B0GWD6;A0A1B0GVI9 O75787 239 246 ATP6AP2 Renin receptor yes no 2 0.0035475 89.55 By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1.237 1.0786 17.653 7 Median 1.3035 1.2025 NaN 1 0 Median 1.3928 1.2029 17.495 3 0 Median 1.0063 1.0786 NaN 1 0 Median 0.91507 0.7684 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.237 1.0328 NaN 1 0 Median 30415000 13171000 17243000 11803000 5117300 6686100 14428000 6077200 8350600 2259500 963080 1296400 1356100 711280 644800 0 0 0 567850 302200 265650 15593 316 16234 80743;80744;80745;80746;80747;80748;80749 81838;81839 81838 2 ILVGHALHNDLK LEVVQKEVAEMLKGRILVGHALHNDLKVLF KGRILVGHALHNDLKVLFLDHPKKKIRDTQ R I L L K V 1 0 1 1 0 0 0 1 2 1 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1328.7565 Q9GZR2;A0A0C4DG31 Q9GZR2 322 333 REXO4 RNA exonuclease 4 yes no 2;3 0.0004307 51.135 By matching By matching By matching By MS/MS By MS/MS 1 1 2 3 3 1.2406 1.1037 24.955 10 Median 1.4925 1.437 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5015 1.5264 NaN 1 0 Median 1.1739 1.0047 14.854 2 0 Median 1.1939 1.14 31.277 3 0 Median 1.215 0.99998 9.0267 3 0 Plateau 38893000 16892000 22002000 2458000 1084200 1373700 0 0 0 1253300 455780 797520 2607300 1025500 1581800 21569000 9267700 12301000 11006000 5058500 5947700 15594 3912 16235 80750;80751;80752;80753;80754;80755;80756;80757;80758;80759 81840;81841;81842;81843;81844;81845 81843 6 ILVGNKNDDPER RWLHEINQNCDDVCRILVGNKNDDPERKVV VCRILVGNKNDDPERKVVETEDAYKFAGQM R I L E R K 0 1 2 2 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 1 1368.6997 Q15286;F5H157 Q15286 116 127 RAB35 Ras-related protein Rab-35 yes no 3 0.00028623 59.57 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.037 0.99658 13.75 5 Median 0.77525 0.81465 NaN 1 0 Median 1.1704 1.1223 2.057 2 0 Median 0.97145 0.99658 NaN 1 1 Median 1.037 0.91793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8353300 3534200 4819100 3721300 1488100 2233200 2443800 1028400 1415300 1560200 701740 858460 628060 315890 312170 0 0 0 0 0 0 15595 2938 16236 80760;80761;80762;80763;80764 81846;81847;81848;81849 81847 4 ILVGPSEIGDASK SVRKSGKHVTNSPFKILVGPSEIGDASKVR FKILVGPSEIGDASKVRVWGKGLSEGHTFQ K I L S K V 1 0 0 1 0 0 1 2 0 2 1 1 0 0 1 2 0 0 0 1 0 0 13 0 1284.6925 Q14315 Q14315 2031 2043 FLNC Filamin-C yes yes 2 0.0003206 88.441 By MS/MS By MS/MS 1 1 1.2677 1.1693 86.272 2 Median 2.2425 2.1521 NaN 1 1 Median 0.71662 0.63533 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35128000 8662400 26466000 29118000 5263900 23854000 6010400 3398500 2611900 0 0 0 0 0 0 0 0 0 0 0 0 15596 2871 16237 80765;80766 81850;81851 81850 2 ILVGTNLVR SRDREKRERERQELRILVGTNLVRLSQLEG ERQELRILVGTNLVRLSQLEGVNVERYKQI R I L V R L 0 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 9 0 983.61277 Q96QK1 Q96QK1 218 226 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.0016867 78.77 By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 1.1867 1.0744 29.641 6 Median 1.121 1.0599 9.5731 3 0 Plateau 1.2563 1.086 NaN 1 0 Median 1.9651 2.105 NaN 1 0 Median 1.4257 1.2282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55954000 25267000 30687000 40432000 18793000 21639000 12340000 5282300 7057800 1664800 571500 1093300 1517700 620650 897020 0 0 0 0 0 0 15597 3722 16238 80767;80768;80769;80770;80771;80772 81852;81853;81854;81855 81853 4 ILVLDDTNHER LDEDLAAYCRRRDIRILVLDDTNHERERLE RDIRILVLDDTNHERERLEQLFEMADQYQY R I L E R E 0 1 1 2 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1323.6783 P09543;K7ERC4;K7EN66;C9K0L8;K7ERZ0 P09543 118 128 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 2;3 3.0465E-05 121.9 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1.0748 1.0363 28.433 8 Median 0.75805 0.75353 40.329 2 1 Median 1.1471 0.99748 23.008 2 0 Median 1.1453 1.1382 22.806 3 0 Median 1.245 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58708000 26320000 32387000 11794000 6467300 5326400 12341000 4949200 7391500 17483000 7515000 9967700 17090000 7388800 9701600 0 0 0 0 0 0 15598 1918 16239 80773;80774;80775;80776;80777;80778;80779;80780 81856;81857;81858;81859;81860;81861;81862;81863;81864;81865 81858 10 ILVLDDTNHERER LDEDLAAYCRRRDIRILVLDDTNHERERLE IRILVLDDTNHERERLEQLFEMADQYQYQV R I L E R L 0 2 1 2 0 0 2 0 1 1 2 0 0 0 0 0 1 0 0 1 0 0 13 1 1608.822 P09543;K7ERC4;K7EN66;C9K0L8;K7ERZ0 P09543 118 130 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 3 0.014544 38.787 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15599 1918 16240 80781 81866 81866 1 ILVNDGDASK NSERVRMCGASEDRKILVNDGDASKARLEL SEDRKILVNDGDASKARLELREENPLNHNV K I L S K A 1 0 1 2 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1030.5295 Q6W2J9;H7BYY2 Q6W2J9 31 40 BCOR BCL-6 corepressor yes no 2 0.0044043 53.327 By MS/MS 1 0.85043 0.94681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85043 0.94681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193600 1000200 1193400 0 0 0 0 0 0 2193600 1000200 1193400 0 0 0 0 0 0 0 0 0 15600 3191 16241 80782 81867;81868 81867 2 ILVNMAAGQVSIR QTKGYNKVSPFFVPKILVNMAAGQVSIRYK PKILVNMAAGQVSIRYKLKGPNHAVSTACT K I L I R Y 2 1 1 0 0 1 0 1 0 2 1 0 1 0 0 1 0 0 0 2 0 0 13 0 1370.7704 Q9NWU1;C9J2G3;C9JQQ2 Q9NWU1 183 195 OXSM 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial yes no 2 0.036319 60.434 By MS/MS By matching 1 1 1.527 1.4286 31.649 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1381 1.1422 NaN 1 0 Median 2.0489 1.7869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5417300 2488200 2929000 0 0 0 0 0 0 4533000 2197000 2336000 884240 291230 593010 0 0 0 0 0 0 15601 4151 16242 80783;80784 81869 81869 0 ILVPEGTR ATIGFEVQEEGYLAKILVPEGTRDVPLGTP EEGYLAKILVPEGTRDVPLGTPLCIIVEKE K I L T R D 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 8 0 883.51272 P10515;H0YDD4 P10515 275 282 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.0028985 131.04 By MS/MS By MS/MS 1 1 1.0689 0.96679 24.619 2 Median 0.85843 0.81233 NaN 1 0 Median 1.3311 1.1506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34799000 15866000 18934000 17525000 8722900 8801800 17275000 7142800 10132000 0 0 0 0 0 0 0 0 0 0 0 0 15602 1938 16243 80785;80786 81870;81871;81872;81873 81873 4 ILVQQFEVQLQQYR PGLQHEYAAPADYFRILVQQFEVQLQQYRQ RILVQQFEVQLQQYRQQIEELENHLATQAN R I L Y R Q 0 1 0 0 0 5 1 0 0 1 2 0 0 1 0 0 0 0 1 2 0 0 14 0 1790.9679 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 295 308 NUPL1 Nucleoporin p58/p45 yes no 2 1.4806E-26 163.77 By MS/MS 1 0.96421 1.0085 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96421 1.0085 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304000 2542300 2761700 0 0 0 0 0 0 5304000 2542300 2761700 0 0 0 0 0 0 0 0 0 15603 1247 16244 80787 81874 81874 1 ILVTGGSGLVGK ______________________________ SMRILVTGGSGLVGKAIQKVVADGAGLPGE R I L G K A 0 0 0 0 0 0 0 4 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1099.6601 E9PP60;E9PLH9;E9PP14;A0A0J9YX13;E9PKL9;Q13630 E9PP60 10 21 TSTA3 GDP-L-fucose synthase yes no 2 0.00085134 60.102 By MS/MS By MS/MS 1 1 1.0697 0.93641 8.5668 2 Median 0.96689 0.88137 NaN 1 0 Median 1.1834 0.99489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27408000 12722000 14686000 17537000 8443400 9093200 9871500 4279000 5592400 0 0 0 0 0 0 0 0 0 0 0 0 15604 290 16245 80788;80789 81875;81876;81877;81878 81876 4 ILVTLLHTLER GAIALGHPLGASGCRILVTLLHTLERMGRS SGCRILVTLLHTLERMGRSRGVAALCIGGG R I L E R M 0 1 0 0 0 0 1 0 1 1 4 0 0 0 0 0 2 0 0 1 0 0 11 0 1306.7973 Q9BWD1 Q9BWD1 362 372 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2;3 0.0001154 132.9 By MS/MS By MS/MS By matching By matching 1 4 1 1 1.1077 1.0989 17.132 7 Median 1.1077 1.0989 NaN 1 0 Median 1.3117 1.1406 17.438 4 0 Median NaN NaN NaN 0 0 Median 0.95803 0.81675 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0621 0.93478 NaN 1 0 Median 160720000 68735000 91989000 4980800 2423500 2557300 154940000 65890000 89048000 0 0 0 403590 184820 218770 0 0 0 401560 236730 164830 15605 3868 16246 80790;80791;80792;80793;80794;80795;80796 81879;81880;81881 81881 3 ILVTSNDSR GRKITGIEPLPGENKILVTSNDSRIRLYDL LPGENKILVTSNDSRIRLYDLRDLSLSMKY K I L S R I 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 9 0 1003.5298 H7BY83;Q5JSH3 H7BY83 657 665 WDR44 WD repeat-containing protein 44 yes no 2 0.0097875 73.26 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15606 1246 16247 80797 81882 81882 1 ILWIDAR GGWPNGLTVDYLEKRILWIDARSDAIYSAR TVDYLEKRILWIDARSDAIYSARYDGSGHM R I L A R S 1 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 7 0 885.50724 Q07954 Q07954 1448 1454 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 0.034356 47.849 By MS/MS By matching 1 2 1.8413 1.5893 45.557 3 Median 0.7737 0.77303 NaN 1 0 Median 1.9279 1.6896 8.6499 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6531000 3727100 2803900 5698400 3438000 2260400 832600 289170 543440 0 0 0 0 0 0 0 0 0 0 0 0 15607 2733 16248 80798;80799;80800 81883 81883 1 ILWQGTEDLSVPGVEHEAR FKLNWMNLRDAETGKILWQGTEDLSVPGVE GTEDLSVPGVEHEARVPKKILKCKAVSREL K I L A R V 1 1 0 1 0 1 3 2 1 1 2 0 0 0 1 1 1 1 0 2 0 0 19 0 2135.0647 O43924;B8ZZK5;C9IZ52 O43924 30 48 PDE6D Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta yes no 3 0.023445 14.77 By MS/MS 1 0.80982 0.81971 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80982 0.81971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2358100 1621900 736160 0 0 0 0 0 0 2358100 1621900 736160 0 0 0 0 0 0 0 0 0 15608 1601 16249 80801 81884 81884 1 ILYDFTAR HRGYQPTPAMAKYVKILYDFTARNANELSV AMAKYVKILYDFTARNANELSVLKDEVLEV K I L A R N 1 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 8 0 997.52328 A0A3B3ISQ4;Q9H6S3;A0A087WX39 A0A3B3ISQ4 499 506 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.012659 54.549 By MS/MS By matching By matching By matching 1 1 1 2 1.4182 1.1746 19.526 5 Median 0.98191 0.94492 NaN 1 0 Median 1.5885 1.3823 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4182 1.1746 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3763 1.1874 28.041 2 0 Median 6826400 3084300 3742200 4239200 2088600 2150500 1974300 729180 1245200 0 0 0 155200 70633 84571 0 0 0 457730 195820 261910 15609 426 16250 80802;80803;80804;80805;80806 81885;81886 81885 2 ILYEGTHLDPER QRIQERIAREEIKKKILYEGTHLDPERKHN KKKILYEGTHLDPERKHNGSSSN_______ K I L E R K 0 1 0 1 0 0 2 1 1 1 2 0 0 0 1 0 1 0 1 0 0 0 12 0 1441.7201 Q5RI15 Q5RI15 99 110 COX20 Cytochrome c oxidase protein 20 homolog yes yes 3 0.00029608 57.175 By MS/MS By MS/MS 1 1 1.1245 1.0348 1.3423 2 Median 1.0449 1.0447 NaN 1 0 Median 1.2102 1.025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5766300 2672000 3094300 3265100 1641400 1623800 2501200 1030600 1470500 0 0 0 0 0 0 0 0 0 0 0 0 15610 3071 16251 80807;80808 81887;81888 81888 2 ILYGHSGPVYGASFSPDR VLERIMDEKTASELKILYGHSGPVYGASFS GHSGPVYGASFSPDRNYLLSSSEDGTVRLW K I L D R N 1 1 0 1 0 0 0 3 1 1 1 0 0 1 2 3 0 0 2 1 0 0 18 0 1921.9323 Q15542 Q15542 538 555 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 3 1.4507E-06 69.188 By matching By MS/MS By matching 1 1 1 0.73767 0.782 96.082 3 Median NaN NaN NaN 0 0 Median 0.17216 0.15249 NaN 1 0 Median 0.73767 0.782 NaN 1 0 Median 0.96131 0.82822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29251000 19841000 9409900 0 0 0 11739000 9374100 2364800 15848000 9600500 6247500 1664300 866640 797640 0 0 0 0 0 0 15611 2957 16252 80809;80810;80811 81889 81889 1 ILYLTPEQEK IMRYVLHCQGTEEEKILYLTPEQEKDKSHF TEEEKILYLTPEQEKDKSHFTDKETGQEHE K I L E K D 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 1 0 1 0 0 0 10 0 1232.6653 B7Z7P8;P62495 B7Z7P8 329 338 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 2.749E-05 144.09 By MS/MS By MS/MS By MS/MS 1 1 1 1.0763 0.99682 16.77 3 Median 1.0763 0.99682 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0899 1.0453 NaN 1 0 Median 0.84951 0.76567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69824000 35679000 34144000 12717000 6367900 6349300 0 0 0 30699000 15222000 15477000 26407000 14089000 12318000 0 0 0 0 0 0 15612 638 16253 80812;80813;80814 81890;81891;81892;81893 81893 4 ILYLTPEQEKDK IMRYVLHCQGTEEEKILYLTPEQEKDKSHF EEKILYLTPEQEKDKSHFTDKETGQEHELI K I L D K S 0 0 0 1 0 1 2 0 0 1 2 2 0 0 1 0 1 0 1 0 0 0 12 1 1475.7872 B7Z7P8;P62495 B7Z7P8 329 340 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2;3 0.0001803 90.629 By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 0.94628 0.94251 17.492 8 Median 0.9221 0.88358 19.478 2 0 Median 1.097 1.0315 31.321 2 0 Median 1.0047 1.0531 7.1185 2 0 Median 0.89578 0.85083 5.8974 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66686000 34694000 31991000 14907000 8155200 6751600 6463300 3050300 3413100 15588000 8282700 7305500 29728000 15206000 14521000 0 0 0 0 0 0 15613 638 16254 80815;80816;80817;80818;80819;80820;80821;80822 81894;81895;81896;81897;81898;81899;81900;81901 81900 8 ILYMTDEVNDPSLTIK LPAIILVLIALPSLRILYMTDEVNDPSLTI LYMTDEVNDPSLTIKSIGHQWYWTYEYTDY R I L I K S 0 0 1 2 0 0 1 0 0 2 2 1 1 0 1 1 2 0 1 1 0 0 16 0 1850.9336 P00403 P00403 83 98 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 7.0977E-10 119.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 3 0.47443 0.44695 22.151 11 Median 0.47078 0.44386 1.2839 3 0 Median 0.77994 0.66924 4.7773 2 0 Median 0.36738 0.35053 13.923 2 0 Median NaN NaN NaN 0 0 Median 0.46346 0.5218 NaN 1 0 Median 0.63192 0.5203 10.203 3 0 Median 81087000 53354000 27733000 56440000 37743000 18697000 11395000 6219500 5175600 6542400 4717300 1825100 0 0 0 5415800 3859000 1556800 1293300 814990 478350 15614 1819 16255;16256 80823;80824;80825;80826;80827;80828;80829;80830;80831;80832;80833 81902;81903;81904;81905;81906;81907;81908;81909 81907 587 8 ILYNSLNDSFKR NRWRPRSFARPELMKILYNSLNDSFKRLIY LMKILYNSLNDSFKRLIYPLLCREFRAKLT K I L K R L 0 1 2 1 0 0 0 0 0 1 2 1 0 1 0 2 0 0 1 0 0 0 12 1 1468.7674 Q8N5C6 Q8N5C6 484 495 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 7.3772E-07 110.08 By MS/MS 2 1.0714 1.2158 20.872 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0714 1.2158 20.872 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10444000 4813200 5631100 0 0 0 0 0 0 10444000 4813200 5631100 0 0 0 0 0 0 0 0 0 15615 3377 16257 80834;80835 81910 81910 1 ILYPEIPR TRSGKVFPTGPSDWRILYPEIPRKLRELEA TGPSDWRILYPEIPRKLRELEAEGYKLVIF R I L P R K 0 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 8 0 999.57532 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1 M0QYH2 194 201 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.0042476 82.671 By MS/MS By MS/MS By matching 1 1 1 0.97945 0.84738 18.534 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61982 0.62012 NaN 1 0 Median 0.99982 0.86183 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97945 0.84738 NaN 1 0 Median 13546000 7562200 5984200 0 0 0 0 0 0 11460000 6588700 4871700 1530900 708540 822320 0 0 0 555200 264990 290220 15616 1418 16258 80836;80837;80838 81911;81912;81913;81914;81915 81911 5 ILYSQCGDVMR FKEAFQLFDRTGDGKILYSQCGDVMRALGQ GDGKILYSQCGDVMRALGQNPTNAEVLKVL K I L M R A 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 0 0 1 1 0 0 11 0 1340.6217 P14649;F8W1I5;F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;F8VPF3 F8W1R7 27 37 MYL6B;MYL6 Myosin light chain 6B;Myosin light polypeptide 6 no no 2 6.3905E-05 152.34 By MS/MS By MS/MS By MS/MS 1 3 1 1.175 1.0083 27.611 5 Median 1.2737 1.2381 NaN 1 0 Median 1.175 1.0083 34.606 3 1 Median 0.91349 0.92401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 293310000 133580000 159740000 10930000 4779800 6149900 262170000 118640000 143530000 20217000 10153000 10064000 0 0 0 0 0 0 0 0 0 15617 1082;2008 16259;16260 80839;80840;80841;80842;80843 81916;81917;81918;81919;81920;81921;81922;81923;81924;81925;81926 81919 365 11 IMADNPSWDGEK ESPQLSPQDVTTHAKIMADNPSWDGEKTII HAKIMADNPSWDGEKTIIITCSFTPGSCTL K I M E K T 1 0 1 2 0 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 0 0 12 0 1361.5922 Q6P2Q9 Q6P2Q9 2199 2210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 3.6978E-06 117.7 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 0.94002 0.91709 14.902 9 Median 0.79081 0.76061 NaN 1 0 Median 1.0512 0.92478 17.078 2 0 Median 0.71616 0.7933 20.507 2 0 Median 1.1241 1.013 1.1767 3 0 Plateau 0.80023 0.83736 NaN 1 0 Median NaN NaN NaN 0 0 Median 50125000 25404000 24721000 4304300 1364100 2940300 6932400 3247700 3684800 23851000 13290000 10561000 7901000 3688500 4212500 7135600 3813800 3321800 0 0 0 15618 3157 16261;16262 80844;80845;80846;80847;80848;80849;80850;80851;80852 81927;81928;81929;81930;81931;81932;81933;81934;81935;81936;81937 81931 1673 11 IMAFREEIAPINFK VGDLLIDSLQDHIEKIMAFREEIAPINFKV KIMAFREEIAPINFKVKTVNDLSSQLSPLD K I M F K V 2 1 1 0 0 0 2 0 0 3 0 1 1 2 1 0 0 0 0 0 0 0 14 1 1677.8912 P46939;Q5T097 P46939 2735 2748 UTRN Utrophin yes no 3 0.04834 14.988 By MS/MS By matching 1 2 1.4083 1.1965 8.8942 3 Median 1.0454 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4645 1.2377 4.7953 2 0 Median 5068100 2479800 2588200 3550700 2130000 1420700 0 0 0 0 0 0 0 0 0 0 0 0 1517400 349810 1167600 15619 2349 16263 80853;80854;80855 81938 81938 1 IMAISAGDAYASNK YQNARDLLNTGGIQKIMAISAGDAYASNKA KIMAISAGDAYASNKASKAASVLLYSLWAH K I M N K A 4 0 1 1 0 0 0 1 0 2 0 1 1 0 0 2 0 0 1 0 0 0 14 0 1410.6813 Q99959 Q99959 822 835 PKP2 Plakophilin-2 yes yes 2 0.000117 83.397 By MS/MS By MS/MS 1 2 0.83089 0.84735 12.648 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64478 0.71204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85837 0.87843 5.0933 2 1 Median NaN NaN NaN 0 0 Median 23291000 12755000 10536000 0 0 0 0 0 0 4642700 2797500 1845200 0 0 0 18648000 9957300 8690600 0 0 0 15620 3773 16264 80856;80857;80858 81939;81940;81941;81942 81942 4 IMALDIDER IVTHSNQALNQLFEKIMALDIDERHLLRLG NQLFEKIMALDIDERHLLRLGHGEEELETE K I M E R H 1 1 0 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1074.5379 O60306 O60306 866 874 AQR Intron-binding protein aquarius yes yes 2 0.0014585 81.296 By MS/MS By matching By matching 1 3 1 0.91927 0.78386 31.548 5 Median 0.46242 0.45288 NaN 1 0 Median 0.91927 0.78386 14.92 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1555 0.94993 NaN 1 0 Median 8762700 4685900 4076800 3272600 2112900 1159700 4906400 2315400 2591000 0 0 0 0 0 0 0 0 0 583720 257600 326120 15621 1611 16265 80859;80860;80861;80862;80863 81943 81943 1 IMAQIER AVFWERCNELQDIEKIMAQIERGEARIQRR NELQDIEKIMAQIERGEARIQRRISIKKAL K I M E R G 1 1 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 900 906 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.016244 69.176 By MS/MS By MS/MS By matching By MS/MS 1 1 2 3 1.1441 1.038 71.539 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1441 1.258 NaN 1 0 Median 1.4996 1.274 NaN 1 0 Median 0.94372 0.96853 9.7943 2 0 Median 1.23 0.99573 106.05 3 1 Median 44921000 23314000 21606000 0 0 0 0 0 0 11780000 6168100 5611800 4407100 1632600 2774400 18761000 10065000 8695900 9973300 5449100 4524200 15622 1608;643;167 16266 80864;80865;80866;80867;80868;80869;80870 81944;81945;81946;81947 81944 4 IMASFGNFANDNEIK PEESVQETLAAAVPKIMASFGNFANDNEIK IMASFGNFANDNEIKVLLKAFIANLKSSSP K I M I K V 2 0 3 1 0 0 1 1 0 2 0 1 1 2 0 1 0 0 0 0 0 0 15 0 1669.777 P42858 P42858 235 249 HTT Huntingtin yes yes 2 0.00036103 58.676 By MS/MS By matching By matching 1 1 1 1.0968 1.0909 20.441 3 Median 1.0968 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86751 0.90947 NaN 1 0 Median 1.3331 1.3677 NaN 1 0 Median 6623800 2964000 3659800 5254900 2280200 2974700 0 0 0 0 0 0 0 0 0 1195000 600880 594140 173870 82893 90980 15623 2319 16267 80871;80872;80873 81948 81948 1 IMASSPDMDLATVSALR LAKGFTAAGVLAAHKIMASSPDMDLATVSA ASSPDMDLATVSALRKMGVKLTPHNKETVQ K I M L R K 3 1 0 2 0 0 0 0 0 1 2 0 2 0 1 3 1 0 0 1 0 0 17 0 1776.875 P32322;E2QRB3;J3KQ22;J3QL24;J3QR88;J3QLK9;J3QL23;J3QL32;J3KTA8;J3QKT3;J3QRZ0 P32322 30 46 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 2 1.7895E-05 77.593 By MS/MS By matching By matching By matching 1 1 1 1 1.325 1.215 32.067 4 Median 0.69523 0.66042 NaN 1 0 Median 1.5013 1.2945 NaN 1 0 Median 1.1694 1.1431 NaN 1 0 Median 1.5362 1.2913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7456400 3857100 3599300 4533800 2671900 1861900 365280 148440 216840 2196100 889470 1306600 361290 147310 213980 0 0 0 0 0 0 15624 2218 16268 80874;80875;80876;80877 81949 81949 1 IMATPEQVGK LPFADDKRKMPFTEKIMATPEQVGKMKAIV PFTEKIMATPEQVGKMKAIVEKLRFTYRSD K I M G K M 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1072.5587 P12956;B1AHC9 P12956 452 461 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00021694 128.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 4 2 1 1.031 0.91242 18.154 14 Median 0.95548 0.89098 10.652 3 0 Plateau 1.1623 0.97499 6.0161 2 0 Median 0.792 0.79649 1.1526 2 0 Median 1.1218 0.94963 27.19 4 0 Median 0.92816 0.95809 16.314 2 1 Median 1.2131 0.99954 NaN 1 0 Median 175070000 88807000 86260000 29742000 15250000 14492000 56342000 25951000 30391000 62350000 35078000 27272000 17827000 8389200 9438000 6215100 3172700 3042400 2591100 966990 1624100 15625 1985 16269;16270 80878;80879;80880;80881;80882;80883;80884;80885;80886;80887;80888;80889;80890;80891 81950;81951;81952;81953;81954;81955;81956;81957;81958;81959;81960;81961;81962;81963;81964;81965;81966 81950 766 17 IMDLLGDQVK QERKFVGGSGQVSERIMDLLGDQVKLNHPV QVSERIMDLLGDQVKLNHPVTHVDQSSDNI R I M V K L 0 0 0 2 0 1 0 1 0 1 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1130.6005 P21397 P21397 230 239 MAOA Amine oxidase [flavin-containing] A yes yes 2 0.0029582 58.433 By MS/MS By matching By matching 1 1 1 1.6033 1.464 27.055 3 Median 1.1628 1.1061 NaN 1 0 Median 1.6033 1.464 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1628 1.9 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7274000 3339900 3934100 6989900 3248000 3741900 133920 41834 92091 0 0 0 150160 50058 100110 0 0 0 0 0 0 15626 2089 16271 80892;80893;80894 81967;81968 81967 2 IMDPEIALK PQLAYALLQAQVVMRIMDPEIALKILHRKI AQVVMRIMDPEIALKILHRKIHVTPLIPGK R I M L K I 1 0 0 1 0 0 1 0 0 2 1 1 1 0 1 0 0 0 0 0 0 0 9 0 1028.5576 Q9H0L4 Q9H0L4 181 189 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 0.0030333 67.897 By matching By MS/MS By matching 1 1 1 0.772 0.7771 20.173 3 Median NaN NaN NaN 0 0 Median 0.65554 0.58229 NaN 1 0 Median 0.772 0.7771 NaN 1 0 Median 0.99912 0.85872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16012000 9126000 6885800 0 0 0 567490 372010 195480 14791000 8456900 6334300 653050 297060 355990 0 0 0 0 0 0 15627 3927 16272 80895;80896;80897 81969;81970 81970 2 IMDPNIVGSEHYDVAR LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA MDPNIVGSEHYDVARGVQKILQDYKSLQDI R I M A R G 1 1 1 2 0 0 1 1 1 2 0 0 1 0 1 1 0 0 1 2 0 0 16 0 1814.8621 P06576;H0YH81 P06576 407 422 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 9.0305E-11 165.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 3 3 3 2 1 0.98406 0.95919 35.506 20 Median 0.88509 0.8315 39.21 8 0 Median 1.2252 1.0348 8.8056 3 0 Median 0.98478 0.9573 15.231 3 0 Plateau 1.485 1.2903 12.842 3 0 Plateau 1.4177 1.4171 24.322 2 0 Median 1.8212 1.5666 NaN 1 0 Median 556570000 276340000 280230000 346030000 179000000 167030000 119600000 55127000 64468000 62683000 31174000 31509000 9355000 4007900 5347000 17067000 6250100 10817000 1843800 781310 1062500 15628 1872 16273;16274 80898;80899;80900;80901;80902;80903;80904;80905;80906;80907;80908;80909;80910;80911;80912;80913;80914;80915;80916;80917 81971;81972;81973;81974;81975;81976;81977;81978;81979;81980;81981;81982;81983;81984;81985;81986;81987 81978 627 17 IMDQAANPQYVWDR AKDSVREQDQTLLLKIMDQAANPQYVWDRM KIMDQAANPQYVWDRMLGGFKHKNFRTREG K I M D R M 2 1 1 2 0 2 0 0 0 1 0 0 1 0 1 0 0 1 1 1 0 0 14 0 1705.7882 Q7Z460;F8WA11 Q7Z460 118 131 CLASP1 CLIP-associating protein 1 yes no 2 1.2581E-05 88.441 By MS/MS By matching By matching 1 1 1 0.84961 0.80694 11.001 3 Median 0.83977 0.80694 NaN 1 0 Median 0.85558 0.75079 NaN 1 0 Median 0.84961 0.93187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7339300 3347000 3992300 4470200 1827200 2643000 272240 134300 137930 2596900 1385500 1211400 0 0 0 0 0 0 0 0 0 15629 1090 16275 80918;80919;80920 81988;81989 81988 2 IMDQTLK ELSEGQVRQLEEQLRIMDQTLKALMAAEDK RQLEEQLRIMDQTLKALMAAEDKQMCRA__ R I M L K A 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 7 0 847.44734 H0YKX5;H0YL42;H7BYY1;F5H7S3;B7Z596 H0YKX5 123 129 TPM1 no no 2 0.015644 70.912 By MS/MS By MS/MS By matching 1 1 1 1.1729 1.0862 9.8703 3 Plateau 1.1796 1.1472 NaN 1 0 Median 1.1239 0.94714 NaN 1 0 Median 1.1217 1.0862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6438300 2721300 3717000 2897600 1264500 1633100 2014500 875420 1139100 1526200 581380 944820 0 0 0 0 0 0 0 0 0 15630 1193;1249 16276 80921;80922;80923 81990;81991 81990 2 IMDSSQNAYNEDTSALVAR ISQSLLQTFIGRFRRIMDSSQNAYNEDTSA SQNAYNEDTSALVARLDEMERGLFQTGQKG R I M A R L 3 1 2 2 0 1 1 0 0 1 1 0 1 0 0 3 1 0 1 1 0 0 19 0 2083.948 Q9BRX5 Q9BRX5 149 167 GINS3 DNA replication complex GINS protein PSF3 yes yes 2 1.6416E-18 120.14 By MS/MS By MS/MS 1 1 0.98557 0.88447 5.7211 2 Median 0.89626 0.8494 NaN 1 0 Median 1.0838 0.92099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11233000 6489300 4743300 9634300 5847200 3787100 1598300 642090 956210 0 0 0 0 0 0 0 0 0 0 0 0 15631 3806 16277 80924;80925 81992;81993 81992 2 IMEAIELYR FTGKKTIETVKAAERIMEAIELYREETAKM VKAAERIMEAIELYREETAKMKEHKAICKA R I M Y R E 1 1 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 9 0 1136.59 Q9UNX4 Q9UNX4 760 768 WDR3 WD repeat-containing protein 3 yes yes 2 0.02476 52.716 By MS/MS 1 1.4545 1.5556 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4545 1.5556 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2308600 1016800 1291800 0 0 0 0 0 0 2308600 1016800 1291800 0 0 0 0 0 0 0 0 0 15632 4351 16278 80926 81994 81994 1 IMEAMEK NAVKVRHILCEKHGKIMEAMEKLKSGMRFN ILCEKHGKIMEAMEKLKSGMRFNEVAAQYS K I M E K L 1 0 0 0 0 0 2 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 7 0 850.39286 Q9Y237;H0Y4T6;J3KMW3;H0Y610;H0Y8P6;A0A494C021 Q9Y237 51 57 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes no 2 0.029709 50.127 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1481 1.0134 11.391 6 Median 0.94231 0.88943 8.8292 2 0 Median 1.3061 1.114 7.2607 2 0 Median 1.0417 0.99485 NaN 1 0 Median 1.2812 1.0322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37574000 17979000 19596000 12890000 6440900 6449100 2990000 1295700 1694300 15510000 7546500 7964000 6183900 2695800 3488100 0 0 0 0 0 0 15633 4370 16279 80927;80928;80929;80930;80931;80932 81995;81996;81997;81998;81999;82000;82001;82002 81997 8 IMEFTTTLLNTSPEGWK EGERYNYSKCTVVVRIMEFTTTLLNTSPEG EFTTTLLNTSPEGWKLLKKDLCNTHLMRVL R I M W K L 0 0 1 0 0 0 2 1 0 1 2 1 1 1 1 1 4 1 0 0 0 0 17 0 1966.971 P78527 P78527 1341 1357 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00036392 47.288 By MS/MS By matching By MS/MS By matching By matching 3 3 7 2 1 0.83556 0.84029 15.174 16 Median 0.84545 0.84705 17.727 3 1 Plateau 0.95589 0.83358 2.1129 3 0 Median 0.75192 0.82572 6.835 7 0 Median 1.2791 1.1688 3.3012 2 0 Median NaN NaN NaN 0 0 Median 1.0251 0.88446 NaN 1 0 Median 37006000 20588000 16419000 21377000 12054000 9322900 6424600 3418000 3006600 8680700 4850100 3830600 372740 188110 184630 0 0 0 150920 76976 73948 15634 2647 16280;16281 80933;80934;80935;80936;80937;80938;80939;80940;80941;80942;80943;80944;80945;80946;80947;80948 82003;82004;82005;82006;82007;82008 82008 1320 6 IMEGPAFNFLDAPAVR GGWPQFGVGAEICARIMEGPAFNFLDAPAV MEGPAFNFLDAPAVRVTGADVPMPYAKILE R I M V R V 3 1 1 1 0 0 1 1 0 1 1 0 1 2 2 0 0 0 0 1 0 0 16 0 1746.8763 P11177 P11177 309 324 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 4.2955E-10 106.49 By MS/MS By MS/MS By MS/MS 5 1 1 0.72171 0.69861 13.372 7 Median 0.68789 0.68448 16.007 5 2 Median 0.91441 0.76043 NaN 1 0 Median 0.72171 0.69861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50168000 26904000 23264000 33914000 18601000 15313000 14451000 7287600 7163400 1803000 1015500 787520 0 0 0 0 0 0 0 0 0 15635 1954 16282;16283 80949;80950;80951;80952;80953;80954;80955 82009;82010;82011;82012;82013;82014;82015;82016;82017 82011 733 9 IMEMSAK VAKVSFTGSVPTGMKIMEMSAKGIKPVTLE GSVPTGMKIMEMSAKGIKPVTLELGGKSPL K I M A K G 1 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 0 0 0 0 7 0 808.3823 P49189 P49189 240 246 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.027519 51.787 By matching By MS/MS 1 1 1.3724 1.2645 24.791 2 Median 1.5286 1.5067 NaN 1 0 Median 1.2322 1.0612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473200 959240 1513900 706290 251140 455150 1766900 708100 1058800 0 0 0 0 0 0 0 0 0 0 0 0 15636 2372 16284 80956;80957 82018;82019 82019 2 IMENNLENELK ALDEHLFPVRIGDMRIMENNLENELKSSIS GDMRIMENNLENELKSSISALNSSQLEPVV R I M L K S 0 0 3 0 0 0 3 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1345.6548 Q96N67;A0A0U1RRC1;A0A0U1RQJ5 Q96N67 761 771 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.0051664 67.414 By MS/MS 1 0.87399 0.84586 NaN 1 Median 0.87399 0.84586 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9068500 4728600 4339900 9068500 4728600 4339900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15637 3707 16285 80958 82020 82020 1 IMESLPQIQR SIQELSNQVTALQQKIMESLPQIQRMADDV ALQQKIMESLPQIQRMADDVVAIESEVKSM K I M Q R M 0 1 0 0 0 2 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 0 10 0 1213.6489 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3878 3887 SYNE2 Nesprin-2 yes no 2 0.031122 33.797 By MS/MS 1 1.2775 1.1117 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2775 1.1117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1095900 410060 685850 0 0 0 0 0 0 0 0 0 1095900 410060 685850 0 0 0 0 0 0 15638 3521 16286 80959 82021 82021 1 IMEVDYSVSK RAIETLSGKVELHGKIMEVDYSVSKKLRSR ELHGKIMEVDYSVSKKLRSRKIQIRNIPPH K I M S K K 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 2 0 0 1 2 0 0 10 0 1169.5638 F8W930;Q9Y6M1 F8W930 68 77 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.0039134 71.349 By MS/MS 2 2.1499 1.9951 NaN 1 Median 2.1499 1.9951 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44954000 8449100 36505000 44954000 8449100 36505000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15639 1088 16287 80960;80961 82022;82023 82023 2 IMEVIDAITTTAQSHQR CGTDMTIGTDSALHRIMEVIDAITTTAQSH EVIDAITTTAQSHQRTFVLEVMGRHCGYLA R I M Q R T 2 1 0 1 0 2 1 0 1 3 0 0 1 0 0 1 3 0 0 1 0 0 17 0 1912.9677 P17858 P17858 185 201 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 3 6.34E-06 74.786 By MS/MS By MS/MS By matching 4 3 1 1.2319 1.1342 14.981 8 Median 1.0727 1.0454 13.885 4 0 Median 1.507 1.3051 4.959 3 0 Median NaN NaN NaN 0 0 Median 1.1183 0.91943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30484000 13660000 16824000 22847000 10653000 12193000 7551100 2968000 4583100 0 0 0 85778 38041 47736 0 0 0 0 0 0 15640 2047 16288 80962;80963;80964;80965;80966;80967;80968;80969 82024;82025;82026;82027;82028;82029;82030;82031 82027 8 IMEYYEK FNIEKGRLVQTQRLKIMEYYEKKEKQIEQQ LVQTQRLKIMEYYEKKEKQIEQQKKIQMSN K I M E K K 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 2 0 0 0 7 0 974.44192 P36543;C9J8H1;Q96A05 P36543 53 59 ATP6V1E1;ATP6V1E2 V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2 yes no 2 0.025229 54.549 By matching By MS/MS 1 2 1.0884 1.0002 8.9893 3 Plateau 1.0884 1.0249 NaN 1 0 Median 1.0639 0.8995 6.9312 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12674000 6305800 6368700 6382500 3039200 3343300 6291900 3266600 3025400 0 0 0 0 0 0 0 0 0 0 0 0 15641 2258 16289 80970;80971;80972 82032 82032 1 IMFEVQDLK TLPNGERLSLPPNVRIMFEVQDLKYATLAT LPPNVRIMFEVQDLKYATLATVSRCGMVWF R I M L K Y 0 0 0 1 0 1 1 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 9 0 1121.5791 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2341 2349 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00088636 92.439 By MS/MS By matching By MS/MS By matching By matching 2 2 2 2 1 1.0494 1.0443 8.0156 9 Median 1.0471 1.0273 2.3138 2 0 Median 1.0994 0.96563 7.4948 2 0 Median 1.0168 1.1065 0.7508 2 0 Median 1.1223 1.0443 14.556 2 0 Median 1.0494 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median 137780000 65506000 72273000 56921000 27097000 29824000 16618000 7702400 8916000 61519000 29517000 32003000 2521100 1106900 1414200 199210 82950 116260 0 0 0 15642 2865 16290 80973;80974;80975;80976;80977;80978;80979;80980;80981 82033;82034;82035;82036;82037;82038 82034 6 IMFSEMK RRKFLHDNMVEIPNRIMFSEMKRVTKALDL NMVEIPNRIMFSEMKRVTKALDLADMITRV R I M M K R 0 0 0 0 0 0 1 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 7 0 884.4136 P49916;K7EJR4 P49916 628 634 LIG3 DNA ligase 3 yes no 2 0.021555 58.981 By MS/MS By matching 1 2 1.4457 1.2858 17.617 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86674 0.95653 NaN 1 0 Median 1.5007 1.2973 1.2585 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5862700 2696200 3166600 0 0 0 0 0 0 4962300 2308300 2654000 900370 387860 512520 0 0 0 0 0 0 15643 2406 16291 80982;80983;80984 82039 82039 1 IMGDLMR SKEADASPASAGICRIMGDLMRTMPILSPG PASAGICRIMGDLMRTMPILSPGNTQTLTE R I M M R T 0 1 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 7 0 834.40918 Q9BW27;J3QL54;J3QLD4;J3QLV0 Q9BW27 232 238 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.012264 78.616 By MS/MS By matching 1 1 1.2572 1.1585 9.213 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2188 1.2365 NaN 1 0 Median 1.2967 1.0855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17188000 8110300 9077600 0 0 0 0 0 0 16321000 7712400 8608400 867130 397900 469230 0 0 0 0 0 0 15644 3861 16292 80985;80986 82040;82041 82041 2 IMGGASANEMLLSGR FGQSPDGCSTVMFPKIMGGASANEMLLSGR IMGGASANEMLLSGRKLTAQEACGKGLVSQ K I M G R K 2 1 1 0 0 0 1 3 0 1 2 0 2 0 0 2 0 0 0 0 0 0 15 0 1505.733 Q9Y232 Q9Y232 493 507 CDYL Chromodomain Y-like protein yes yes 2 6.7656E-06 86.313 By MS/MS By MS/MS By matching 1 1 1 2.5096 2.199 69.734 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97226 0.9925 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.965 3.984 NaN 1 1 Median 2.5096 2.199 NaN 1 0 Median 13865000 4662500 9203000 0 0 0 0 0 0 6607100 3107700 3499400 0 0 0 6911100 1454900 5456200 347200 99839 247370 15645 4369 16293 80987;80988;80989 82042;82043 82042 2 IMGIPEEEQMGLLR QQDKDMFQETMEAMRIMGIPEEEQMGLLRV RIMGIPEEEQMGLLRVISGVLQLGNIVFKK R I M L R V 0 1 0 0 0 1 3 2 0 2 2 0 2 0 1 0 0 0 0 0 0 0 14 0 1614.8109 P35579 P35579 328 341 MYH9 Myosin-9 yes yes 2 1.4281E-32 213.31 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 3 3 2 1 1 1.0118 0.95165 13.014 15 Median 1.0593 0.99336 7.9668 5 1 Median 1.0118 0.85787 19.595 3 0 Median 0.87317 0.95165 8.4143 3 2 Median 0.95266 0.83707 9.9025 2 0 Median 0.99065 1.0315 NaN 1 0 Median 1.1169 0.9158 NaN 1 0 Median 269210000 129690000 139520000 190760000 90728000 100030000 38918000 19453000 19465000 32345000 15973000 16372000 1023500 569060 454450 5978400 2896500 3081900 191140 73956 117190 15646 2244 16294;16295;16296 80990;80991;80992;80993;80994;80995;80996;80997;80998;80999;81000;81001;81002;81003;81004 82044;82045;82046;82047;82048;82049;82050;82051;82052;82053;82054;82055;82056;82057;82058;82059 82047 989;990 16 IMGLDLPDGGHLTHGYMSDVKR ANLAVYTALLQPHDRIMGLDLPDGGHLTHG DGGHLTHGYMSDVKRISATSIFFESMPYKL R I M K R I 0 1 0 3 0 0 0 4 2 1 3 1 2 0 1 1 1 0 1 1 0 0 22 1 2411.1726 P34897;G3V5L0;G3V4W5;G3V540 P34897 161 182 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes no 3 1.6287E-09 55.763 By MS/MS By matching 1 1 0.69912 0.66435 56.242 2 Median 0.99231 0.98881 NaN 1 0 Median 0.49255 0.44636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13235000 6443100 6792100 13079000 6357200 6721600 156440 85893 70550 0 0 0 0 0 0 0 0 0 0 0 0 15647 2228 16297 81005;81006 82060;82061 82061 2 IMGNIWDASLVVER VYSGKHNGICIYFSRIMGNIWDASLVVERI RIMGNIWDASLVVERIFKSGNREITAIESS R I M E R I 1 1 1 1 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 2 0 0 14 0 1601.8236 O75694;E9PF10 O75694 673 686 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.00070644 63.283 By MS/MS 1 0.94006 1.0341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94006 1.0341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4847400 2392000 2455500 0 0 0 0 0 0 4847400 2392000 2455500 0 0 0 0 0 0 0 0 0 15648 1692 16298 81007 82062;82063 82063 2 IMGNLGAADIDHK EAEQYRKMVMETIEKIMGNLGAADIDHKLE EKIMGNLGAADIDHKLEEQLIDGILYAFQE K I M H K L 2 0 1 2 0 0 0 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 13 0 1353.6711 O75533 O75533 875 887 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 0.00012749 72.705 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 3 1.0745 1.0719 77.161 8 Median 0.99975 1.0035 NaN 1 0 Median 1.3311 1.1565 NaN 1 0 Median 0.11033 0.13257 NaN 1 0 Median 1.1002 0.94973 26.436 2 0 Median 1.1549 1.2086 24.48 3 0 Median NaN NaN NaN 0 0 Median 37799000 19142000 18657000 1692100 965480 726580 3086800 1098100 1988700 4083400 3662600 420710 10966000 5024200 5942200 17970000 8391300 9579000 0 0 0 15649 1683 16299 81008;81009;81010;81011;81012;81013;81014;81015 82064;82065;82066;82067;82068 82067 3 IMGPNYTPGK GRVFSGLVSTGLKVRIMGPNYTPGKKEDLY GLKVRIMGPNYTPGKKEDLYLKPIQRTILM R I M G K K 0 0 1 0 0 0 0 2 0 1 0 1 1 0 2 0 1 0 1 0 0 0 10 0 1076.5325 P13639 P13639 429 438 EEF2 Elongation factor 2 yes yes 2 2.1078E-05 146.58 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.80261 0.75496 25.597 7 Median 0.82006 0.77656 27.562 3 0 Median 0.72419 0.62051 6.2505 2 0 Median 0.81153 0.8928 NaN 1 0 Median 0.7079 0.61289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98576000 55942000 42634000 22484000 11814000 10670000 62576000 36507000 26069000 6029800 3288500 2741300 7486400 4332700 3153700 0 0 0 0 0 0 15650 1992 16300 81016;81017;81018;81019;81020;81021;81022 82069;82070;82071;82072;82073;82074;82075;82076;82077;82078;82079;82080;82081;82082;82083 82078 15 IMGPNYTPGKK GRVFSGLVSTGLKVRIMGPNYTPGKKEDLY LKVRIMGPNYTPGKKEDLYLKPIQRTILMM R I M K K E 0 0 1 0 0 0 0 2 0 1 0 2 1 0 2 0 1 0 1 0 0 0 11 1 1204.6274 P13639 P13639 429 439 EEF2 Elongation factor 2 yes yes 2;3 3.4856E-05 122.13 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 2 0.79537 0.7738 11.542 10 Median 0.77413 0.80724 11.706 4 0 Median 0.78395 0.75954 9.4048 3 0 Median 0.82269 0.94139 NaN 1 0 Median 0.75167 0.73431 10.038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46737000 25419000 21317000 13111000 6672800 6438200 30218000 16864000 13355000 1863500 978830 884640 1544000 903970 640010 0 0 0 0 0 0 15651 1992 16301 81023;81024;81025;81026;81027;81028;81029;81030;81031;81032 82084;82085;82086;82087;82088;82089;82090;82091;82092;82093;82094;82095 82093 12 IMGVAGGLTNLSK APNLSIIIGASTAAKIMGVAGGLTNLSKMP AKIMGVAGGLTNLSKMPACNIMLLGAQRKT K I M S K M 1 0 1 0 0 0 0 3 0 1 2 1 1 0 0 1 1 0 0 1 0 0 13 0 1259.6908 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 231 243 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.00058618 69.979 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1.1437 0.99767 24.149 8 Median 0.98312 0.92695 NaN 1 0 Median 1.1067 0.98148 NaN 1 0 Median 0.83594 0.8129 11.314 2 1 Median 1.2284 1.0544 5.5071 2 0 Median 1.6011 1.5242 NaN 1 0 Median 1.706 1.4459 NaN 1 0 Median 78990000 39470000 39521000 9895400 4837600 5057800 609440 269190 340250 58968000 30457000 28511000 2882300 1232200 1650100 5641200 2255700 3385400 993920 418340 575570 15652 3513 16302;16303 81033;81034;81035;81036;81037;81038;81039;81040 82096;82097;82098;82099;82100;82101;82102 82098 1750 7 IMIAMLDRDHTGK ______________________________ CRIMIAMLDRDHTGKMGFNAFKELWAALNA R I M G K M 1 1 0 2 0 0 0 1 1 2 1 1 2 0 0 0 1 0 0 0 0 0 13 1 1499.7589 H7C2Z6;H7BXD5;P28676;C9JIZ3;C9JWQ8 H7C2Z6 9 21 GCA Grancalcin yes no 3 0.0072631 29.491 By MS/MS 1 0.89091 0.9327 NaN 1 Median 0.89091 0.9327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6728800 3105600 3623200 6728800 3105600 3623200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15653 1242 16304 81041 82103 82103 1 IMIANANKPGVLK KEVADHWAADGWRWKIMIANANKPGVLKQL WKIMIANANKPGVLKQLMAAAEGHPWLWLI K I M L K Q 2 0 2 0 0 0 0 1 0 2 1 2 1 0 1 0 0 0 0 1 0 0 13 1 1367.7959 O14967 O14967 448 460 CLGN Calmegin yes yes 3 0.0039346 35.006 By MS/MS By matching 1 1 1.0306 1.0301 6.45 2 Median 0.95227 0.98417 NaN 1 0 Median 1.1154 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3612900 2144800 1468100 2510200 1485400 1024700 1102700 659370 443360 0 0 0 0 0 0 0 0 0 0 0 0 15654 1507 16305 81042;81043 82104 82104 1 IMIHQPSGGAR AAGTPGMRHSLPNSRIMIHQPSGGARGQAT PNSRIMIHQPSGGARGQATDIAIQAEEIMK R I M A R G 1 1 0 0 0 1 0 2 1 2 0 0 1 0 1 1 0 0 0 0 0 0 11 0 1165.6026 Q16740;M0R208;A0A2R8YEF5 Q16740 175 185 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial;ATP-dependent Clp protease proteolytic subunit yes no 2 0.033498 30.254 By matching By MS/MS 1 1 1.0294 0.92314 10.605 2 Median 0.90769 0.85645 NaN 1 0 Median 1.1675 0.99503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5264400 2556300 2708100 4311200 2164500 2146700 953190 391810 561390 0 0 0 0 0 0 0 0 0 0 0 0 15655 2995 16306 81044;81045 82105 82105 1 IMIMTDQDQDGSHIK NYEDEDSLKTLRYGKIMIMTDQDQDGSHIK IMIMTDQDQDGSHIKGLLINFIHHNWPSLL K I M I K G 0 0 0 3 0 2 0 1 1 3 0 1 2 0 0 1 1 0 0 0 0 0 15 0 1730.7968 P11388;Q02880;E9PCY5 P11388 536 550 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2;3 6.1326E-10 159.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 8 7 6 2 1.3721 1.3634 14.943 25 Median 1.3394 1.2857 NaN 1 0 Median 1.4835 1.3158 NaN 1 0 Median 1.0434 1.1448 17.271 8 0 Median 1.6777 1.4995 8.5344 7 1 Median 1.3295 1.372 7.1602 6 0 Median 1.6274 1.3414 23.877 2 0 Median 366120000 162510000 203610000 5370500 1714600 3655900 4667900 1920000 2747900 213900000 98388000 115510000 39899000 15024000 24875000 97200000 43452000 53748000 5085100 2011400 3073700 15656 1963;2704 16307;16308;16309 81046;81047;81048;81049;81050;81051;81052;81053;81054;81055;81056;81057;81058;81059;81060;81061;81062;81063;81064;81065;81066;81067;81068;81069;81070 82106;82107;82108;82109;82110;82111;82112;82113;82114;82115;82116;82117;82118;82119;82120;82121;82122;82123;82124;82125;82126;82127;82128;82129;82130;82131;82132;82133;82134;82135;82136;82137;82138;82139 82107 740;741 34 IMISDFGLSK KPENLLYYSQDEESKIMISDFGLSKMEGKG DEESKIMISDFGLSKMEGKGDVMSTACGTP K I M S K M 0 0 0 1 0 0 0 1 0 2 1 1 1 1 0 2 0 0 0 0 0 0 10 0 1109.5791 Q14012;H7C071;A0A087WUR6;Q8IU85 A0A087WUR6 67 76 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D no no 2 0.0039125 55.064 By MS/MS By matching 1 2 1.0353 0.92907 49.346 3 Median 0.99544 0.92907 NaN 1 0 Median 1.6135 1.3788 61.896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6076800 2641800 3435000 4692900 2105000 2587900 1383900 536800 847080 0 0 0 0 0 0 0 0 0 0 0 0 15657 34;2852 16310 81071;81072;81073 82140;82141 82140 2 IMKDILEK KKQEEKKTKFENLCKIMKDILEKKVEKVVV KFENLCKIMKDILEKKVEKVVVSNRLVTSP K I M E K K 0 0 0 1 0 0 1 0 0 2 1 2 1 0 0 0 0 0 0 0 0 0 8 1 988.5627 P07900 P07900 574 581 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.012697 126.52 By MS/MS By MS/MS By matching By matching By matching 3 3 1 1 1 1.0404 1.0598 32.491 9 Median 1.0404 1.1032 40.199 3 0 Median 1.0939 1.0598 24.975 3 0 Plateau 1.1257 1.2882 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3677 1.5323 NaN 1 0 Median 0.91702 0.82777 NaN 1 0 Median 142580000 66817000 75766000 114950000 53947000 61001000 19579000 9456500 10122000 2609700 1227800 1381900 0 0 0 3479900 1259900 2220100 1967500 925870 1041600 15658 1894 16311;16312 81074;81075;81076;81077;81078;81079;81080;81081;81082 82142;82143;82144;82145;82146 82145 666 5 IMKGEADAMSLDGGYLYIAGK IECETAENTEECIAKIMKGEADAMSLDGGY DAMSLDGGYLYIAGKCGLVPVLAENYKTEG K I M G K C 3 0 0 2 0 0 1 4 0 2 2 2 2 0 0 1 0 0 2 0 0 0 21 1 2202.0701 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 403 423 yes no 3 0.00028354 46.362 By MS/MS 2 0.1102 0.10904 128.46 2 Median 0.1102 0.10904 128.46 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9738700 8977300 761400 9738700 8977300 761400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 15659 769 16313 81083;81084 82147;82148 82147 2 IMLDSSNLQHQK IEDTVFHVFDKVKVKIMLDSSNLQHQKIRM KVKIMLDSSNLQHQKIRMSLVEPQIPGISI K I M Q K I 0 0 1 1 0 2 0 0 1 1 2 1 1 0 0 2 0 0 0 0 0 0 12 0 1412.7082 Q9Y2L1;G3V1J5 Q9Y2L1 911 922 DIS3 Exosome complex exonuclease RRP44 yes no 2;3 0.0015808 58.132 By MS/MS By MS/MS 2 1 1.2244 1.051 68.037 3 Plateau NaN NaN NaN 0 0 Median 0.70759 0.60429 78.265 2 2 Median 1.0861 1.1994 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14985000 8169400 6815200 0 0 0 10346000 6252200 4093600 4638900 1917200 2721600 0 0 0 0 0 0 0 0 0 15660 4384 16314 81085;81086;81087 82149;82150;82151 82151 3 IMLEDGNLHVTQGAGR MELRGAPLVVICQGKIMLEDGNLHVTQGAG MLEDGNLHVTQGAGRFIPCSPFSDYVYKRI K I M G R F 1 1 1 1 0 1 1 3 1 1 2 0 1 0 0 0 1 0 0 1 0 0 16 0 1709.8519 Q14195 Q14195 452 467 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 3 2.8535E-05 70.281 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2396 1.0956 9.0957 5 Median 1.1793 1.1159 10.511 2 0 Median 1.2396 1.076 NaN 1 0 Median 1.0754 1.0956 NaN 1 0 Median 1.5484 1.295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43549000 20766000 22783000 28373000 13304000 15070000 3235300 1388500 1846800 10910000 5668800 5241300 1029900 404700 625150 0 0 0 0 0 0 15661 2864 16315 81088;81089;81090;81091;81092 82152;82153;82154;82155;82156;82157 82152 6 IMLFTNEDNPHGNDSAK ANLFSDVQFKMSHKRIMLFTNEDNPHGNDS LFTNEDNPHGNDSAKASRARTKAGDLRDTG R I M A K A 1 0 3 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 17 0 1901.8578 P12956;B1AHC9 P12956 166 182 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 1.4725E-77 245.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 5 1 1.0235 0.86991 8.7634 15 Median 0.90368 0.83301 11.617 4 0 Median 1.0727 0.8989 3.524 2 0 Median 0.81853 0.80115 4.3565 3 0 Median 1.1214 0.94373 3.7487 5 2 Median NaN NaN NaN 0 0 Median 1.0235 0.8432 NaN 1 0 Median 859120000 425920000 433200000 250560000 121500000 129070000 46895000 20977000 25918000 395020000 206140000 188880000 163990000 76076000 87913000 0 0 0 2651700 1229600 1422100 15662 1985 16316;16317 81093;81094;81095;81096;81097;81098;81099;81100;81101;81102;81103;81104;81105;81106;81107 82158;82159;82160;82161;82162;82163;82164;82165;82166;82167;82168;82169;82170;82171;82172;82173;82174;82175;82176;82177;82178;82179;82180;82181;82182 82166 767 25 IMLGDEAALLEQK DSTFATSPHLESLLKIMLGDEAALLEQKEL LKIMLGDEAALLEQKELLSNWYHFLVTRLL K I M Q K E 2 0 0 1 0 1 2 1 0 1 3 1 1 0 0 0 0 0 0 0 0 0 13 0 1429.7487 Q9BW27;J3KT10;J3QL54;J3QLD4;J3QLV0 Q9BW27 286 298 NUP85 Nuclear pore complex protein Nup85 yes no 2 8.0947E-06 106.29 By matching By MS/MS 1 2 1.0044 1.0376 9.15 3 Median 1.073 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98794 1.0039 4.6682 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32670000 16645000 16025000 3690200 1711100 1979200 0 0 0 28980000 14934000 14046000 0 0 0 0 0 0 0 0 0 15663 3861 16318;16319 81108;81109;81110 82183;82184 82184 1842 2 IMLKGDNITLLQSVSN EEIHSKTKSRKQLGRIMLKGDNITLLQSVS MLKGDNITLLQSVSN_______________ R I M S N - 0 0 2 1 0 1 0 1 0 2 3 1 1 0 0 2 1 0 0 1 0 0 16 1 1744.9393 P62304;A6NHK2 P62304 77 92 SNRPE Small nuclear ribonucleoprotein E yes no 2 0.00054627 68.069 By matching By matching By MS/MS By matching By matching 1 2 2 2 1 1.0998 1.069 11.64 8 Median 1.1189 1.0266 NaN 1 0 Median 1.2518 1.0835 26.548 2 0 Median 1.0848 1.069 3.57 2 0 Median NaN NaN NaN 0 0 Median 1.0998 1.1725 0.86016 2 0 Median 1.2136 0.9949 NaN 1 0 Median 28017000 12762000 15255000 4036300 1770100 2266200 3121500 1526000 1595500 15397000 7028700 8368400 0 0 0 4782000 2142000 2640000 680070 295190 384880 15664 2581 16320 81111;81112;81113;81114;81115;81116;81117;81118 82185;82186 82185 2 IMLLNHPDK SPTANKGKIRDAHRRIMLLNHPDKGGSPYI RDAHRRIMLLNHPDKGGSPYIAAKINEAKD R I M D K G 0 0 1 1 0 0 0 0 1 1 2 1 1 0 1 0 0 0 0 0 0 0 9 0 1079.5798 Q96DA6 Q96DA6 85 93 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes yes 2 0.015941 57.96 By MS/MS 1 3.1418 2.8998 NaN 1 Median 3.1418 2.8998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2780800 634820 2146000 2780800 634820 2146000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15665 3625 16321 81119 82187 82187 1 IMLLNHPDKGGSPYIAAK SPTANKGKIRDAHRRIMLLNHPDKGGSPYI LNHPDKGGSPYIAAKINEAKDLLEGQAKK_ R I M A K I 2 0 1 1 0 0 0 2 1 2 2 2 1 0 2 1 0 0 1 0 0 0 18 1 1924.0241 Q96DA6 Q96DA6 85 102 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes yes 3;4 3.068E-08 89.982 By MS/MS By MS/MS By MS/MS 2 2 2 0.75355 0.73667 27.399 6 Median 0.74443 0.69714 1.0008 2 0 Median 1.1479 0.9951 4.4861 2 0 Median 0.59775 0.60824 33.892 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78444000 40317000 38127000 33447000 18260000 15187000 33936000 15469000 18466000 11062000 6587900 4473800 0 0 0 0 0 0 0 0 0 15666 3625 16322 81120;81121;81122;81123;81124;81125 82188;82189;82190;82191;82192;82193;82194;82195 82193 8 IMLNTPEDVQALVSGK SPKAITSLKYMLLCKIMLNTPEDVQALVSG MLNTPEDVQALVSGKLALRYAGRQTEALKC K I M G K L 1 0 1 1 0 1 1 1 0 1 2 1 1 0 1 1 1 0 0 2 0 0 16 0 1713.8971 O00231 O00231 259 274 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.00028884 48.741 By MS/MS 2 0.99413 0.84746 0.10688 2 Median NaN NaN NaN 0 0 Median 0.99413 0.84746 0.10688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15349000 7529800 7818900 0 0 0 15349000 7529800 7818900 0 0 0 0 0 0 0 0 0 0 0 0 15667 1448 16323 81126;81127 82196;82197;82198 82198 3 IMLPGVLR VMKDSAVNAICYGAKIMLPGVLRYEDGIEV AICYGAKIMLPGVLRYEDGIEVNQEIVVIT K I M L R Y 0 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 0 1 0 0 8 0 897.54699 O60832;H7C2Q2 O60832 315 322 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.0035609 88.734 By matching By MS/MS By matching By MS/MS By matching 1 3 3 5 1 1.0327 0.98358 14.921 13 Median NaN NaN NaN 0 0 Median 1.2453 1.1059 NaN 1 0 Median 0.87898 0.90421 2.7922 3 0 Plateau 1.2152 1.0455 12.371 3 0 Median 0.94242 0.98358 20.094 5 0 Median 1.2132 1.0009 NaN 1 0 Median 33276000 16784000 16492000 0 0 0 365180 159390 205790 21350000 10803000 10547000 1697200 761480 935740 9633200 4951700 4681500 230370 107710 122660 15668 1634 16324 81128;81129;81130;81131;81132;81133;81134;81135;81136;81137;81138;81139;81140 82199;82200;82201;82202;82203;82204 82200 6 IMLPWDPTGK RHVLLRQGVLGIKVKIMLPWDPTGKIGPKK GIKVKIMLPWDPTGKIGPKKPLPDHVSIVE K I M G K I 0 0 0 1 0 0 0 1 0 1 1 1 1 0 2 0 1 1 0 0 0 0 10 0 1156.5951 P23396;E9PL09;E9PPU1;H0YEU2;E9PSF4 P23396 188 197 RPS3 40S ribosomal protein S3 yes no 2 0.00040727 99.442 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 2 2 2 2 1 0.89845 0.81865 12.861 15 Median 0.84049 0.77232 11 6 0 Median 0.92283 0.77503 1.5619 2 0 Median 0.90476 0.85781 2.6041 2 0 Median 1.0039 0.83768 3.2502 2 0 Median 0.97579 1.018 16.531 2 0 Median 0.9973 0.83177 NaN 1 0 Median 150090000 78175000 71911000 98977000 52404000 46573000 9462900 4792900 4670000 20393000 10432000 9960600 1098200 521330 576860 17164000 8502800 8661100 2991100 1521900 1469200 15669 2112 16325;16326 81141;81142;81143;81144;81145;81146;81147;81148;81149;81150;81151;81152;81153;81154;81155 82205;82206;82207;82208;82209;82210;82211;82212;82213;82214;82215;82216;82217;82218 82216 882 14 IMLTTPQQIQLNPLQPVPVVKPAVLPGTK LTQTPMVALRQPHNRIMLTTPQQIQLNPLQ QPVPVVKPAVLPGTKALSAVSAQAAAAQKN R I M T K A 1 0 1 0 0 4 0 1 0 2 4 2 1 0 6 0 3 0 0 4 0 0 29 1 3119.8144 O00268;A0A0G2JRY5;V9GY14 O00268 775 803 TAF4 Transcription initiation factor TFIID subunit 4 yes no 3 0.059527 16.27 By MS/MS 1 0.3415 0.39079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3415 0.39079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2725900 1553600 1172300 0 0 0 0 0 0 2725900 1553600 1172300 0 0 0 0 0 0 0 0 0 15670 1453 16327 81156 82219 82219 1 IMLVEPPVAK SVLKSVESTSPEPSKIMLVEPPVAKVLEPS PEPSKIMLVEPPVAKVLEPSETLVVSSETP K I M A K V 1 0 0 0 0 0 1 0 0 1 1 1 1 0 2 0 0 0 0 2 0 0 10 0 1095.6362 P18583 P18583 289 298 SON Protein SON yes yes 2 0.0028032 59.245 By matching By matching By matching By MS/MS By matching 1 1 2 3 1 0.8202 0.76987 51.82 8 Median 1.3352 1.3223 NaN 1 0 Median 1.0048 0.88334 NaN 1 0 Median 0.71977 0.78091 39.508 2 0 Median NaN NaN NaN 0 0 Median 0.69026 0.72266 69.528 3 0 Median 0.85927 0.7072 NaN 1 0 Median 51211000 30106000 21105000 1476800 613960 862800 1076500 571340 505190 9954200 6108900 3845300 0 0 0 35542000 21169000 14373000 3161200 1643000 1518100 15671 2058 16328;16329 81157;81158;81159;81160;81161;81162;81163;81164 82220;82221;82222 82221 825 3 IMMEFER MGTMNRQLKLPQIQKIMMEFERQAEIMDMK LKLPQIQKIMMEFERQAEIMDMKEEMMNDA K I M E R Q 0 1 0 0 0 0 2 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 7 0 954.43031 O43633;M0R1L7;M0R1T5 O43633 125 131 CHMP2A Charged multivesicular body protein 2a yes no 2 0.017757 72.138 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 4 1 2 1.2494 1.1202 9.255 12 Median 1.1929 1.1166 NaN 1 1 Median 1.1492 0.96894 12.582 2 0 Median 1.2077 1.1771 6.5559 2 0 Median 1.3128 1.0932 6.0707 4 0 Median 1.1819 1.1788 NaN 1 0 Median 1.445 1.2094 1.2462 2 0 Median 74434000 32148000 42285000 16786000 6690400 10096000 13551000 5723600 7827600 27108000 12583000 14525000 8428800 3699900 4729000 5419900 2264200 3155800 3139900 1187100 1952800 15672 1579 16330;16331 81165;81166;81167;81168;81169;81170;81171;81172;81173;81174;81175;81176 82223;82224;82225;82226;82227;82228;82229;82230 82225 510 8 IMMFIGGPATQGPGMVVGDELK AVGLLECTFPNTGARIMMFIGGPATQGPGM PATQGPGMVVGDELKTPIRSWHDIDKDNAK R I M L K T 1 0 0 1 0 1 1 5 0 2 1 1 3 1 2 0 1 0 0 2 0 0 22 0 2247.1102 F5H365;Q15436 F5H365 257 278 SEC23A Protein transport protein Sec23A yes no 3 0.057583 7.712 By MS/MS By matching 1 1 0.96063 0.90385 0.60493 2 Median 0.90374 0.90773 NaN 1 0 Median 1.0211 0.9 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4039300 1795500 2243800 1357800 664640 693130 2681600 1130900 1550700 0 0 0 0 0 0 0 0 0 0 0 0 15673 1029 16332 81177;81178 82231 82231 1 IMMLSVLK IFSVASGHLYERFLRIMMLSVLKNTKTPVK LYERFLRIMMLSVLKNTKTPVKFWFLKNYL R I M L K N 0 0 0 0 0 0 0 0 0 1 2 1 2 0 0 1 0 0 0 1 0 0 8 0 933.53913 Q9NYU2 Q9NYU2 1273 1280 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.012836 54.205 By MS/MS By matching 2 2 1.3836 1.2671 21.684 4 Median 1.0804 1.0677 2.136 2 0 Median 1.7317 1.5459 6.0507 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7706100 3555400 4150800 6339200 3058200 3281000 1367000 497180 869790 0 0 0 0 0 0 0 0 0 0 0 0 15674 4179 16333 81179;81180;81181;81182 82232 82232 1 IMMQVHGSK GAVSRTSTAPLDRLKIMMQVHGSKSDKMNI PLDRLKIMMQVHGSKSDKMNIFGGFRQMVK K I M S K S 0 0 0 0 0 1 0 1 1 1 0 1 2 0 0 1 0 0 0 1 0 0 9 0 1029.51 Q6NUK1 Q6NUK1 220 228 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.0025104 71.501 By MS/MS By MS/MS 1 1 1.4 1.2811 20.236 2 Median 1.1297 1.1103 NaN 1 0 Median 1.735 1.4782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396700 2227600 3169100 1116300 520010 596320 4280300 1707500 2572800 0 0 0 0 0 0 0 0 0 0 0 0 15675 3143 16334 81183;81184 82233;82234;82235 82234 3 IMNEEDPEKQR AQSRREEKKRAEKERIMNEEDPEKQRRLEE EKERIMNEEDPEKQRRLEEAALRREQKKLE R I M Q R R 0 1 1 1 0 1 3 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 11 1 1387.6402 Q96A33;A0A087WYW6;J3QR89 Q96A33 444 454 CCDC47 Coiled-coil domain-containing protein 47 yes no 3 0.061648 14.876 By MS/MS By matching By matching 1 1 1 0.91195 0.92629 5.734 3 Plateau 0.91195 0.92629 NaN 1 0 Median 0.90533 0.83924 NaN 1 0 Median 0.84399 0.92744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1806300 994900 811400 989890 542250 447640 593390 353530 239850 223020 99111 123910 0 0 0 0 0 0 0 0 0 15676 3592 16335 81185;81186;81187 82236 82236 1 IMNMIEEIK RWQETCVDAIKVPEKIMNMIEEIKTPASTP IKVPEKIMNMIEEIKTPASTPVSGTPQASP K I M I K T 0 0 1 0 0 0 2 0 0 3 0 1 2 0 0 0 0 0 0 0 0 0 9 0 1119.5668 Q9UHR4 Q9UHR4 239 247 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 0.0056277 57.047 By matching By MS/MS By matching 1 2 1 0.78611 0.79026 45.167 4 Median 0.37499 0.36267 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78611 0.79026 24.452 2 0 Median 1.1072 0.95018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7303700 4389600 2914200 2199300 1663300 536010 0 0 0 4688700 2531800 2156900 415710 194440 221260 0 0 0 0 0 0 15677 4281 16336 81188;81189;81190;81191 82237;82238 82238 2 IMNTFSVMPSPK GTLLISKIREEYPDRIMNTFSVMPSPKVSD PDRIMNTFSVMPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 2 1 2 2 1 0 0 1 0 0 12 0 1350.6676 Q13885;Q9BUF5;K7ESM5;K7ES63;Q9BVA1 Q9BVA1 163 174 TUBB2A;TUBB6;TUBB2B Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2 3.7563E-05 141.95 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 2 0.81139 0.70685 28.236 8 Median 0.72202 0.70975 17.804 3 0 Median 0.82953 0.70396 NaN 1 0 Median 0.57978 0.56046 NaN 1 0 Median 1.5572 1.3575 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9095 0.80209 18.919 2 0 Median 96746000 58337000 38409000 75130000 45381000 29748000 8156600 4661800 3494800 12311000 7866500 4444100 569690 228790 340900 0 0 0 578680 198220 380470 15678 3849;2844;3838 16337;16338 81192;81193;81194;81195;81196;81197;81198;81199 82239;82240;82241;82242;82243;82244;82245;82246 82241 1528 8 IMNTFSVVPSPK GTLLISKIREEYPDRIMNTFSVVPSPKVSD PDRIMNTFSVVPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 1 1 2 2 1 0 0 2 0 0 12 0 1318.6955 A0A0B4J269;Q13509;G3V2A3;P04350;M0R2D3;M0QYM7;M0R042;Q5JP53;P07437;Q5ST81;P68371 P68371 163 174 TUBB3;TUBB4A;TUBB;TUBB4B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 2 3.4285E-06 141.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 5 4 8 6 0.89571 0.80363 44.263 38 Median 0.8049 0.73764 81.935 8 1 Median 0.85896 0.72923 8.6936 7 0 Median 0.7687 0.80857 4.0382 5 0 Median 0.96512 0.84852 4.2467 4 0 Median 1.2789 1.2509 34.588 8 2 Median 0.9709 0.79798 15.186 6 0 Median 1462200000 732660000 729520000 917960000 462500000 455460000 126360000 66960000 59396000 177190000 92880000 84308000 61578000 30469000 31110000 120730000 50118000 70612000 58368000 29738000 28630000 15679 2634;1887;1849;216 16339;16340 81200;81201;81202;81203;81204;81205;81206;81207;81208;81209;81210;81211;81212;81213;81214;81215;81216;81217;81218;81219;81220;81221;81222;81223;81224;81225;81226;81227;81228;81229;81230;81231;81232;81233;81234;81235;81236;81237 82247;82248;82249;82250;82251;82252;82253;82254;82255;82256;82257;82258;82259;82260;82261;82262;82263;82264;82265;82266;82267;82268;82269;82270;82271;82272;82273;82274;82275;82276;82277;82278;82279;82280;82281;82282;82283;82284;82285;82286;82287;82288;82289;82290;82291;82292;82293;82294;82295;82296;82297;82298;82299;82300;82301;82302;82303;82304;82305;82306;82307;82308;82309;82310;82311;82312;82313;82314;82315;82316;82317;82318;82319;82320;82321;82322;82323;82324;82325;82326;82327;82328;82329;82330;82331 82258 88 84 IMNVIGEPIDER GAPIKIPVGPETLGRIMNVIGEPIDERGPI LGRIMNVIGEPIDERGPIKTKQFAPIHAEA R I M E R G 0 1 1 1 0 0 2 1 0 3 0 0 1 0 1 0 0 0 0 1 0 0 12 0 1384.7021 P06576;H0YH81;F8W079 P06576 144 155 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 3.4285E-06 159.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 1 0.81979 0.80891 18.318 12 Median 0.93084 0.7358 12.751 3 1 Plateau 1.1447 0.95999 20.4 3 0 Plateau 0.77532 0.7704 11.253 3 1 Median 1.242 1.0676 3.8368 2 0 Median NaN NaN NaN 0 0 Median 0.72419 0.6343 NaN 1 0 Median 125450000 63089000 62357000 50591000 26326000 24265000 38261000 17425000 20836000 31755000 17210000 14546000 4353900 1855700 2498100 0 0 0 484160 272070 212090 15680 1872 16341;16342 81238;81239;81240;81241;81242;81243;81244;81245;81246;81247;81248;81249 82332;82333;82334;82335;82336;82337;82338;82339;82340;82341;82342;82343;82344;82345 82336 628 14 IMNVIGEPIDERGPIK GAPIKIPVGPETLGRIMNVIGEPIDERGPI MNVIGEPIDERGPIKTKQFAPIHAEAPEFM R I M I K T 0 1 1 1 0 0 2 2 0 4 0 1 1 0 2 0 0 0 0 1 0 0 16 1 1779.9553 P06576;H0YH81;F8W079 P06576 144 159 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 1.1623E-26 201.6 By MS/MS By MS/MS 4 1 0.71115 0.70676 45.613 5 Median 0.69967 0.69665 18.536 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8536 1.9072 NaN 1 0 Median NaN NaN NaN 0 0 Median 80244000 46195000 34049000 73963000 44274000 29689000 0 0 0 0 0 0 0 0 0 6281200 1921400 4359800 0 0 0 15681 1872 16343;16344 81250;81251;81252;81253;81254 82346;82347;82348;82349;82350;82351;82352 82349 628 7 IMPLPAGGPSISQGLPASR GTSVITPLDPTAQLRIMPLPAGGPSISQGL PAGGPSISQGLPASRYNTAADALAALVDAA R I M S R Y 2 1 0 0 0 1 0 3 0 2 2 0 1 0 4 3 0 0 0 0 0 0 19 0 1847.9928 O75376;E7EVK1;A0A088AWL3 O75376 1795 1813 NCOR1 Nuclear receptor corepressor 1 yes no 2 1.1311E-07 69.716 By MS/MS 2 0.36441 0.40309 3.5816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36441 0.40309 3.5816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3899000 2772000 1127000 0 0 0 0 0 0 3899000 2772000 1127000 0 0 0 0 0 0 0 0 0 15682 1665 16345 81255;81256 82353 82353 1 IMQEEGQPLKLPDTKR KIESVHFSDQFSGPKIMQEEGQPLKLPDTK MQEEGQPLKLPDTKRTLLFTFNVPGSGNTY K I M K R T 0 1 0 1 0 2 2 1 0 1 2 2 1 0 2 0 1 0 0 0 0 0 16 2 1881.9982 Q96A33;A0A087WYW6 Q96A33 342 357 CCDC47 Coiled-coil domain-containing protein 47 yes no 3;4 0.0014535 34.277 By MS/MS 2 0.89882 0.97302 40.288 2 Median 0.89882 0.97302 40.288 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14424000 6403800 8020000 14424000 6403800 8020000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15683 3592 16346 81257;81258 82354;82355 82355 2 IMQEYQLEQK LNNHKLFPETWTAEKIMQEYQLEQKDVNSL WTAEKIMQEYQLEQKDVNSLLKYFVTFEVE K I M Q K D 0 0 0 0 0 3 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 10 0 1308.6384 Q9P032 Q9P032 138 147 NDUFAF4 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4 yes yes 2 0.00041856 90.601 By MS/MS 1 0.9646 0.89988 NaN 1 Median 0.9646 0.89988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10850000 5371400 5478100 10850000 5371400 5478100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15684 4199 16347 81259 82356;82357 82356 2 IMQIHSR RKIEFPMPNEEARARIMQIHSRKMNVSPDV PNEEARARIMQIHSRKMNVSPDVNYEELAR R I M S R K 0 1 0 0 0 1 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 7 0 883.46981 R4GNH3;P17980;E9PM69 R4GNH3 349 355 PSMC3 26S protease regulatory subunit 6A yes no 2 0.015495 71.342 By matching By MS/MS By matching 2 2 1 1.2199 1.0868 24.141 5 Median 1.3978 1.3959 35.399 2 0 Median 1.1773 1.0132 6.2287 2 0 Median 1.2384 1.2375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9731000 4416500 5314400 1671500 589970 1081600 6592200 3208000 3384200 1467200 618580 848620 0 0 0 0 0 0 0 0 0 15685 2050 16348 81260;81261;81262;81263;81264 82358;82359 82358 2 IMQQMSDHRYDK LIAIGSSESAQKALKIMQQMSDHRYDKLTV ALKIMQQMSDHRYDKLTVPDDIAANCIYLN K I M D K L 0 1 0 2 0 2 0 0 1 1 0 1 2 0 0 1 0 0 1 0 0 0 12 1 1550.697 O94760;B4DYP1 O94760 200 211 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 3 0.007537 31.228 By MS/MS By MS/MS By matching 1 1 1 1.135 1.1457 16.126 3 Median 0.92338 0.91811 NaN 1 0 Median 1.2692 1.1457 NaN 1 0 Median 1.135 1.2565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7077900 3117200 3960700 3310300 1563900 1746400 3168500 1374300 1794200 599120 179020 420100 0 0 0 0 0 0 0 0 0 15686 1722 16349 81265;81266;81267 82360;82361;82362;82363 82363 4 IMQSPSPENLK SWTRSQPFTLQDLEKIMQSPSPENLKFNAV DLEKIMQSPSPENLKFNAVEVNTYWIDEPD K I M L K F 0 0 1 0 0 1 1 0 0 1 1 1 1 0 2 2 0 0 0 0 0 0 11 0 1242.6278 Q9NU22 Q9NU22 2489 2499 MDN1 Midasin yes yes 2 0.00014272 84.615 By MS/MS By MS/MS 1 1 0.90897 0.91628 17.684 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7552 0.80858 NaN 1 0 Median 1.094 1.0383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9754400 5477700 4276700 0 0 0 0 0 0 8541000 4822000 3719000 1213400 655730 557670 0 0 0 0 0 0 15687 4112 16350 81268;81269 82364;82365;82366;82367;82368 82366 5 IMQSSSEVGYDAMAGDFVNMVEK IAKNAGVEGSLIVEKIMQSSSEVGYDAMAG GYDAMAGDFVNMVEKGIIDPTKVVRTALLD K I M E K G 2 0 1 2 0 1 2 2 0 1 0 1 3 1 0 3 0 0 1 3 0 0 23 0 2507.1018 P10809 P10809 494 516 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 1.1922E-17 82.102 By MS/MS By MS/MS By MS/MS 3 2 2 1.1496 1.0764 7.2567 7 Median 1.1496 1.0754 5.1157 3 0 Median 1.3184 1.1693 11.711 2 0 Median 1.0729 1.0841 7.11 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57509000 25347000 32162000 46868000 20545000 26323000 1937300 817650 1119600 8703900 3983900 4720000 0 0 0 0 0 0 0 0 0 15688 1947 16351 81270;81271;81272;81273;81274;81275;81276 82369;82370;82371;82372;82373 82372 5 IMQTDEEIGK KKKYNARFPPARIKKIMQTDEEIGKVAAAV ARIKKIMQTDEEIGKVAAAVPVIISRALEL K I M G K V 0 0 0 1 0 1 2 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 10 0 1162.554 E9PNC7;C9JCC6;Q14919 E9PNC7 20 29 DRAP1 Dr1-associated corepressor yes no 2 0.00036244 97.431 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3828 1.1877 8.4048 4 Median 1.3757 1.2898 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1319 1.0611 NaN 1 0 Median 1.3899 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.46 1.225 NaN 1 0 Median 27653000 12263000 15390000 3413200 1346700 2066500 0 0 0 18414000 8538600 9875700 3454000 1538700 1915400 0 0 0 2371800 838930 1532800 15689 690 16352 81277;81278;81279;81280 82374;82375;82376;82377;82378;82379;82380 82377 7 IMQVNGWDMTMVTHDQAR EGGPAEIAGLQIGDKIMQVNGWDMTMVTHD VNGWDMTMVTHDQARKRLTKRSEEVVRLLV K I M A R K 1 1 1 2 0 2 0 1 1 1 0 0 3 0 0 0 2 1 0 2 0 0 18 0 2131.9601 O14907 O14907 77 94 TAX1BP3 Tax1-binding protein 3 yes yes 3 1.366E-06 73.464 By matching By MS/MS 1 1 1.1956 1.1057 1.9521 2 Median NaN NaN NaN 0 0 Median 1.3295 1.1211 NaN 1 0 Median 1.0753 1.0906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7089400 2825600 4263800 0 0 0 293970 131060 162910 6795400 2694500 4100900 0 0 0 0 0 0 0 0 0 15690 1501 16353 81281;81282 82381;82382 82382 2 IMRPDDANVAGNVHGGTILK PRADLPPCGACITGRIMRPDDANVAGNVHG DANVAGNVHGGTILKMIEEAGAIISTRHCN R I M L K M 2 1 2 2 0 0 0 3 1 2 1 1 1 0 1 0 1 0 0 2 0 0 20 1 2077.0739 O00154 O00154 59 78 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes yes 2;3;4 1.7416E-20 160.81 By MS/MS By MS/MS By MS/MS 9 4 3 0.95469 0.97821 20.132 16 Median 0.95158 0.98396 7.6652 9 1 Median 1.0152 0.94388 36.58 4 0 Median 0.94086 1.0706 7.8357 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 390890000 193430000 197460000 285780000 139880000 145900000 80539000 39440000 41099000 24572000 14117000 10455000 0 0 0 0 0 0 0 0 0 15691 1443 16354;16355 81283;81284;81285;81286;81287;81288;81289;81290;81291;81292;81293;81294;81295;81296;81297;81298 82383;82384;82385;82386;82387;82388;82389;82390;82391;82392;82393;82394;82395;82396;82397;82398;82399;82400;82401;82402;82403;82404;82405 82393 465 23 IMSIVDPNR YDIGNDPQGEAEFARIMSIVDPNRLGVVTF EAEFARIMSIVDPNRLGVVTFQAFIDFMSR R I M N R L 0 1 1 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 0 1 0 0 9 0 1043.5434 P12814;H9KV75;H0YJW3 P12814 795 803 ACTN1 Alpha-actinin-1 yes no 2 0.00089695 91.853 By MS/MS By MS/MS By matching By matching 1 3 1 1 0.85746 0.78396 24.177 6 Median 1.0238 0.98659 NaN 1 0 Median 0.91007 0.76682 6.9926 3 0 Median 0.76953 0.82468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61844 0.48022 NaN 1 0 Median 22832000 10181000 12651000 10129000 3441100 6687900 11256000 5846700 5409700 1322100 807730 514410 0 0 0 0 0 0 124680 85556 39123 15692 1983 16356 81299;81300;81301;81302;81303;81304 82406;82407;82408;82409;82410 82406 5 IMSSPLSK NRKRHFNAPSHIRRKIMSSPLSKELRQKYN PSHIRRKIMSSPLSKELRQKYNVRSMPIRK K I M S K E 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 3 0 0 0 0 0 0 8 0 861.46299 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KSS0;E5RHH1 P61254 29 36 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0074119 67.169 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 2 1.0037 0.87688 13.658 7 Median 0.94282 0.88553 11.971 2 0 Median 1.0242 0.87688 NaN 1 0 Median 1.0037 0.94525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94091 1.0909 NaN 1 0 Median 0.93666 0.76483 8.3072 2 0 Median 37031000 18637000 18395000 17724000 9193900 8530300 10158000 4921700 5236200 6043900 2868100 3175800 0 0 0 1324300 741990 582340 1780700 910910 869820 15693 2554 16357 81305;81306;81307;81308;81309;81310;81311 82411;82412;82413;82414 82412 4 IMSTPGGEEAIER SSQVGLTSVTSIQERIMSTPGGEEAIERLK ERIMSTPGGEEAIERLKESEKIIAELNETW R I M E R L 1 1 0 0 0 0 3 2 0 2 0 0 1 0 1 1 1 0 0 0 0 0 13 0 1388.6606 A0A087WWA3;Q4R9M9;O60333 A0A087WWA3 438 450 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B yes no 2 0.0026125 64.297 By MS/MS 1 0.89267 0.7471 NaN 1 Median NaN NaN NaN 0 0 Median 0.89267 0.7471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1664900 914760 750110 0 0 0 1664900 914760 750110 0 0 0 0 0 0 0 0 0 0 0 0 15694 57 16358 81312 82415 82415 1 IMTFYPTMEEFR ______________________________ SARIMTFYPTMEEFRNFSRYIAYIESQGAH R I M F R N 0 1 0 0 0 0 2 0 0 1 0 0 2 2 1 0 2 0 1 0 0 0 12 0 1563.7102 O75164;A0A2R8Y4U1;A0A2R8YDF7 O75164 14 25 KDM4A Lysine-specific demethylase 4A yes no 2 0.0018796 50.123 By MS/MS 1 0.99309 1.0702 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99309 1.0702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 988650 527950 460710 0 0 0 0 0 0 988650 527950 460710 0 0 0 0 0 0 0 0 0 15695 1652 16359 81313 82416 82416 1 IMVANIEEVLQR RNLGSINTELQDVQRIMVANIEEVLQRGEA VQRIMVANIEEVLQRGEALSALDSKANNLS R I M Q R G 1 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 0 2 0 0 12 0 1413.765 O75396;A0A087X1A9 O75396 148 159 SEC22B Vesicle-trafficking protein SEC22b yes no 2 0.016372 53.327 By MS/MS By MS/MS 1 1 1.2452 1.0855 4.54 2 Median 1.1125 1.0512 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3936 1.1209 NaN 1 1 Median 12713000 5243800 7468900 6104000 2812400 3291600 0 0 0 0 0 0 0 0 0 0 0 0 6608700 2431400 4177300 15696 1669 16360;16361 81314;81315 82417;82418 82418 534 2 IMVDMLDSDGSGK RQDIKSDGFSIETCKIMVDMLDSDGSGKLG CKIMVDMLDSDGSGKLGLKEFYILWTKIQK K I M G K L 0 0 0 3 0 0 0 2 0 1 1 1 2 0 0 2 0 0 0 1 0 0 13 0 1366.6109 P17655 P17655 579 591 CAPN2 Calpain-2 catalytic subunit yes yes 2 2.0095E-06 118.28 By MS/MS By matching 1 1 1.0613 0.9541 2.0706 2 Median 1.0369 0.94023 NaN 1 0 Median 1.0862 0.96817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13205000 6364800 6840200 11908000 5791800 6116600 1296700 572990 723670 0 0 0 0 0 0 0 0 0 0 0 0 15697 2045 16362 81316;81317 82419;82420 82420 2 IMVHPHVTAVSEQPR SEYRLHPYTVPRDVRIMVHPHVTAVSEQPR IMVHPHVTAVSEQPRAADGVVKVPPASKAP R I M P R A 1 1 0 0 0 1 1 0 2 1 0 0 1 0 2 1 1 0 0 3 0 0 15 0 1699.8828 Q96T58 Q96T58 3197 3211 SPEN Msx2-interacting protein yes yes 2;3;4 2.0156E-05 82.069 By MS/MS By MS/MS By MS/MS By matching 5 3 1 1 0.82446 0.81706 17.857 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80367 0.84957 9.1152 5 1 Median 0.86217 0.76167 4.5493 3 0 Median 0.71666 0.73907 NaN 1 0 Median 1.4532 1.3121 NaN 1 0 Median 42661000 23538000 19123000 0 0 0 0 0 0 28395000 15722000 12673000 3729300 1836500 1892900 8704500 5550400 3154100 1832400 429320 1403100 15698 3741 16363 81318;81319;81320;81321;81322;81323;81324;81325;81326;81327 82421;82422;82423;82424;82425;82426;82427;82428;82429;82430;82431;82432 82424 12 IMVVGSTINDVLAVNTPK EDKTLREIKVTSGAKIMVVGSTINDVLAVN VGSTINDVLAVNTPKDAAQQDAKAEENKKE K I M P K D 1 0 2 1 0 0 0 1 0 2 1 1 1 0 1 1 2 0 0 4 0 0 18 0 1870.0234 O14562;H3BRL3;H3BUM8 O14562 150 167 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 2 6.3866E-14 117.23 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.95417 0.89825 17.92 4 Median 1.1438 1.1181 NaN 1 0 Median 0.93418 0.80073 NaN 1 0 Median 0.97458 1.0076 NaN 1 0 Median 0.91463 0.77153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14779000 7388200 7390400 388770 175960 212810 4318400 2147200 2171200 9730400 4893000 4837500 341020 172070 168950 0 0 0 0 0 0 15699 1230 16364 81328;81329;81330;81331 82433;82434;82435;82436 82434 4 IMWNELETLVR VGTRGKGPKRDEQYRIMWNELETLVRAHIN EQYRIMWNELETLVRAHINNSEKHQRVLEC R I M V R A 0 1 1 0 0 0 2 0 0 1 2 0 1 0 0 0 1 1 0 1 0 0 11 0 1402.7279 Q9NVM9;H0YH12 Q9NVM9 531 541 ASUN Protein asunder homolog yes no 2 0.0020633 55.567 By MS/MS By MS/MS 1 2 1.1176 1.1052 5.6112 3 Median NaN NaN NaN 0 0 Median 1.2304 1.0688 NaN 1 0 Median 1.0915 1.148 5.3711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5020400 2275600 2744800 0 0 0 2204500 968440 1236100 2815900 1307200 1508800 0 0 0 0 0 0 0 0 0 15700 4136 16365 81332;81333;81334 82437;82438;82439 82439 3 IMYDLTSKPPGTTEWE LKMVTEIKKIPGISRIMYDLTSKPPGTTEW MYDLTSKPPGTTEWE_______________ R I M W E - 0 0 0 1 0 0 2 1 0 1 1 1 1 0 2 1 3 1 1 0 0 0 16 1 1866.871 P49915 P49915 678 693 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.00065082 63.283 By MS/MS By matching By MS/MS 3 2 1 0.78929 0.77461 27.247 6 Median 0.77823 0.69231 30.954 3 1 Median 0.98585 0.86978 15.08 2 0 Median 0.7505 0.77978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37593000 20603000 16990000 28923000 15936000 12987000 2212400 1104900 1107400 6457300 3561900 2895400 0 0 0 0 0 0 0 0 0 15701 2405 16366 81335;81336;81337;81338;81339;81340 82440;82441;82442;82443 82442 4 IMYTVFEHTFHVR EVVPNVIEPSFGLGRIMYTVFEHTFHVREG GRIMYTVFEHTFHVREGDEQRTFFSFPAVV R I M V R E 0 1 0 0 0 0 1 0 2 1 0 0 1 2 0 0 2 0 1 2 0 0 13 0 1678.829 P41250 P41250 584 596 GARS Glycine--tRNA ligase yes yes 3;4 0.00014438 71.241 By MS/MS 2 1.2221 1.1653 2.648 2 Median 1.2221 1.1653 2.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17961000 8057400 9903700 17961000 8057400 9903700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15702 2301 16367 81341;81342 82444;82445;82446;82447 82445 4 INAAEIESR LGTVLQLKQPLNTTRINAAEIESRVRELSK PLNTTRINAAEIESRVRELSKLAETTDKVK R I N S R V 2 1 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1001.5142 Q06124;H0YF12 Q06124 221 229 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.000467 97.431 By MS/MS 1 0.64064 0.60686 NaN 1 Median 0.64064 0.60686 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15230000 10456000 4773600 15230000 10456000 4773600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15703 2721 16368 81343 82448 82448 1 INAANYASVK QLPGFVPVAPICTDKINAANYASVKTPALI ICTDKINAANYASVKTPALIVYGDQDPMGQ K I N V K T 3 0 2 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 1 0 0 10 0 1049.5506 Q96IU4;B4DQI4;F8W9U3 Q96IU4 142 151 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 2 0.0020473 61.65 By MS/MS By MS/MS 1 1 1.4512 1.2943 55.023 2 Median 0.93856 0.87714 NaN 1 0 Median 2.2437 1.9099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5422000 2077100 3344900 3898400 1752600 2145800 1523500 324450 1199100 0 0 0 0 0 0 0 0 0 0 0 0 15704 3679 16369 81344;81345 82449;82450;82451 82449 3 INAELLFRPTALSTPSFSSPK NKEKFRIRQPEMIPRINAELLFRPTALSTP FRPTALSTPSFSSPKESVPRRHLSEGTNSY R I N P K E 2 1 1 0 0 0 1 0 0 1 3 1 0 2 3 4 2 0 0 0 0 0 21 1 2275.2212 Q14149 Q14149 485 505 MORC3 MORC family CW-type zinc finger protein 3 yes yes 3 0.00012086 35.748 By MS/MS 2 0.49649 0.56596 25.077 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49649 0.56596 25.077 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3280000 1988400 1291600 0 0 0 0 0 0 3280000 1988400 1291600 0 0 0 0 0 0 0 0 0 15705 2858 16370 81346;81347 82452;82453 82452 2 INAGLNVIGIPSEIISPK IFLAQTQDRLISLKRINAGLNVIGIPSEII GLNVIGIPSEIISPKKVAELHHLLNVHDLV R I N P K K 1 0 2 0 0 0 1 2 0 5 1 1 0 0 2 2 0 0 0 1 0 0 18 0 1834.0564 Q8NCN5;H3BQG3;A8MT40 Q8NCN5 143 160 PDPR Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial yes no 2 0.00029839 41.052 By matching By MS/MS 2 1 0.81103 0.72078 10.911 3 Plateau 0.6331 0.64096 12.094 2 0 Median 0.81103 0.72078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2335800 1310900 1024900 828330 462260 366070 1507400 848610 658830 0 0 0 0 0 0 0 0 0 0 0 0 15706 3419 16371 81348;81349;81350 82454 82454 1 INAQLPLTDK LMRRNSLNRKDAEARINAQLPLTDKARMAR DAEARINAQLPLTDKARMARHVLDNSGEWS R I N D K A 1 0 1 1 0 1 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1111.6237 K7ESP4;Q8WVC6 K7ESP4 159 168 DCAKD Dephospho-CoA kinase domain-containing protein yes no 2 0.0042827 53.756 By MS/MS By matching 1 1 1.0397 0.92076 33.532 2 Median 0.77864 0.72639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3883 1.1671 NaN 1 0 Median 11642000 6115200 5526800 10834000 5711500 5122900 0 0 0 0 0 0 0 0 0 0 0 0 807630 403680 403950 15707 1402 16372 81351;81352 82455 82455 1 INATSHVIQHPMYGAGHK VTMFLQSPCPLYKGRINATSHVIQHPMYGA TSHVIQHPMYGAGHKFRTLHLPVSTTLSDV R I N H K F 2 0 1 0 0 1 0 2 3 2 0 1 1 0 1 1 1 0 1 1 0 0 18 0 1959.9737 A0A3B3IUB9;Q9NR09 Q9NR09 3837 3854 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 4 0.0071496 23.799 By matching By MS/MS 1 1 0.68387 0.62667 27.626 2 Median 0.53726 0.51547 NaN 1 0 Median 0.87047 0.76187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6867700 3294200 3573500 582970 318930 264030 6284800 2975300 3309500 0 0 0 0 0 0 0 0 0 0 0 0 15708 4073;445 16373 81353;81354 82456;82457 82457 2 INAVVETGR KQEDFMTTMDANEEKINAVVETGRRLVSDG DANEEKINAVVETGRRLVSDGNINSDRIQE K I N G R R 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 9 0 957.52434 Q01082;A0A087WUZ3 Q01082 1225 1233 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00073228 101.54 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 0.97983 0.89453 15.892 8 Median NaN NaN NaN 0 0 Median 1.0985 0.90387 NaN 1 0 Median 0.76271 0.84606 10.98 3 2 Median 1.1394 0.99701 16.809 2 0 Median 1.1891 1.2472 NaN 1 0 Median 0.95236 0.79254 NaN 1 0 Median 22578000 11040000 11538000 0 0 0 7999400 3614200 4385200 7123800 3806500 3317300 2926400 1425100 1501300 2309100 1114800 1194400 2219100 1079200 1139900 15709 2681 16374 81355;81356;81357;81358;81359;81360;81361;81362;81363 82458;82459;82460;82461;82462;82463;82464;82465 82461 8 INAWNSPTLPIYEPGLK CPEIRVTVVDVNESRINAWNSPTLPIYEPG AWNSPTLPIYEPGLKEVVESCRGKNLFFST R I N L K E 1 0 2 0 0 0 1 1 0 2 2 1 0 0 3 1 1 1 1 0 0 0 17 0 1912.0094 O60701;E7ER95;E7ER83;E7ETF4;E7EV97 O60701 42 58 UGDH UDP-glucose 6-dehydrogenase yes no 2 2.9121E-05 54.776 By MS/MS By matching 2 1 0.85201 0.77228 44.662 3 Median 1.1335 1.0895 56.569 2 0 Median 0.85201 0.77228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4796000 3132800 1663200 4512400 2999700 1512800 283530 133070 150460 0 0 0 0 0 0 0 0 0 0 0 0 15710 1627 16375 81364;81365;81366 82466;82467 82466 2 INDRFEFPEQLPLDEFLQK LMRFMYDPQTDQNIKINDRFEFPEQLPLDE FEFPEQLPLDEFLQKTDPKDPANYILHAVL K I N Q K T 0 1 1 2 0 2 3 0 0 1 3 1 0 3 2 0 0 0 0 0 0 0 19 1 2377.1954 Q93009;H3BND8;F5H2X1 Q93009 421 439 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.069255 8.2879 By matching By matching By MS/MS 2 1 1 0.79957 0.85962 7.7471 4 Median 0.83865 0.86184 6.923 2 0 Median NaN NaN NaN 0 0 Median 0.68019 0.77087 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81033 0.90042 NaN 1 0 Median NaN NaN NaN 0 0 Median 15521000 8604100 6917300 4131000 2125900 2005100 0 0 0 10317000 5957500 4359300 0 0 0 1073600 520680 552880 0 0 0 15711 3574 16376 81367;81368;81369;81370 82468 82468 1 INDYVEK AFSINFRDAEEAKKKINDYVEKGSHGKIVE DAEEAKKKINDYVEKGSHGKIVELVKVLDP K I N E K G 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 879.4338 CON__P34955 CON__P34955 179 185 yes yes 2 0.044333 55.676 By MS/MS By MS/MS 1 2 0.077613 0.066216 65.009 3 Median 0.024289 0.022723 NaN 1 1 Median 0.082668 0.069801 7.4566 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38469000 36336000 2133400 17309000 16959000 350710 21160000 19377000 1782600 0 0 0 0 0 0 0 0 0 0 0 0 + 15712 763 16377 81371;81372;81373 82469;82470;82471 82471 3 INEAVECLLSLK EVVRKLKAEKSPKAKINEAVECLLSLKAQY KAKINEAVECLLSLKAQYKEKTGKEYIPGQ K I N L K A 1 0 1 0 1 0 2 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1387.7381 P07814;V9GYZ6 P07814 850 861 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.016133 52.79 By MS/MS 2 1.0905 0.95669 9.3138 2 Median NaN NaN NaN 0 0 Median 1.0905 0.95669 9.3138 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2946400 1426500 1519900 0 0 0 2946400 1426500 1519900 0 0 0 0 0 0 0 0 0 0 0 0 15713 1892 16378 81374;81375 82472;82473 82473 2 INEEISVK ASYGVRRGRVCFEMKINEEISVKHLPSTEP RVCFEMKINEEISVKHLPSTEPDPHVVRIG K I N V K H 0 0 1 0 0 0 2 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 930.50221 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0;M0QYI8;M0QYM5 Q9BUJ2 263 270 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.014843 50.607 By MS/MS 1 1.0603 0.92671 NaN 1 Median NaN NaN NaN 0 0 Median 1.0603 0.92671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5710200 2462400 3247800 0 0 0 5710200 2462400 3247800 0 0 0 0 0 0 0 0 0 0 0 0 15714 3840 16379 81376 82474;82475 82474 2 INEELESQYQQSMDSK HKSTSHFRTGEEDKKINEELESQYQQSMDS NEELESQYQQSMDSKLSGRYRRHCGLGFSE K I N S K L 0 0 1 1 0 3 3 0 0 1 1 1 1 0 0 3 0 0 1 0 0 0 16 0 1927.8469 E9PRZ9;E9PM92;O00193 E9PRZ9 48 63 C11orf58;SMAP Small acidic protein yes no 2 3.3838E-14 172.92 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.97752 0.90376 21.964 6 Median 0.98349 0.90852 3.9899 3 0 Plateau 1.31 1.1073 NaN 1 0 Median 1.135 1.0717 NaN 1 0 Median 0.7271 0.59982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43104000 20690000 22414000 34439000 16555000 17884000 2744300 1386000 1358200 5190400 2342600 2847800 730290 406350 323940 0 0 0 0 0 0 15715 965 16380 81377;81378;81379;81380;81381;81382 82476;82477;82478;82479;82480;82481;82482;82483 82479 8 INEILSNALK MENMGRFGSGMNMGRINEILSNALKRGEII MNMGRINEILSNALKRGEIIAKQGGGGGGG R I N L K R 1 0 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1113.6394 A0A087X0X3;P52272;M0R019 A0A087X0X3 372 381 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.00035783 113.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 3 4 2 1.1925 1.0309 17.331 18 Median 1.3744 1.2275 18.636 3 0 Median 1.0383 0.91499 5.9736 2 0 Median 1.2614 1.2429 22.46 4 0 Median 1.2396 1.0323 3.0658 3 0 Median 0.83567 0.83689 11.785 4 0 Median 1.3655 1.1104 4.1425 2 0 Median 582200000 297880000 284320000 36512000 14817000 21695000 6396500 3165800 3230700 168650000 85564000 83088000 16351000 7293300 9057200 329610000 176990000 152630000 24675000 10051000 14624000 15716 116 16381 81383;81384;81385;81386;81387;81388;81389;81390;81391;81392;81393;81394;81395;81396;81397;81398;81399;81400 82484;82485;82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501;82502;82503;82504;82505;82506;82507;82508;82509 82505 26 INEILSNALKR MENMGRFGSGMNMGRINEILSNALKRGEII NMGRINEILSNALKRGEIIAKQGGGGGGGS R I N K R G 1 1 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1269.7405 A0A087X0X3;P52272;M0R019 A0A087X0X3 372 382 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2;3 1.1406E-10 180.8 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 8 5 1.0182 1.0376 22.596 18 Median 1.5556 1.5914 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91644 0.97291 10.079 2 0 Median 1.5747 1.5184 35.111 2 0 Median 0.87767 0.9432 11.113 8 0 Median 1.3942 1.273 14.177 5 0 Median 96296000 49376000 46921000 2300200 737470 1562700 0 0 0 14014000 7514100 6500000 2691000 1127400 1563600 70391000 36917000 33474000 6900500 3079900 3820600 15717 116 16382 81401;81402;81403;81404;81405;81406;81407;81408;81409;81410;81411;81412;81413;81414;81415;81416;81417;81418 82510;82511;82512;82513;82514;82515;82516;82517;82518;82519;82520;82521;82522;82523;82524;82525;82526 82519 17 INEKPQVIADYESGR GRQSKGLTQKDLATKINEKPQVIADYESGR INEKPQVIADYESGRAIPNNQVLGKIERAI K I N G R A 1 1 1 1 0 1 2 1 0 2 0 1 0 0 1 1 0 0 1 1 0 0 15 1 1717.8635 O60869 O60869 99 113 EDF1 Endothelial differentiation-related factor 1 yes yes 2;3 6.3593E-10 128.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 3 1 1 0.91389 0.89062 8.9648 13 Median 0.90672 0.88613 0.80488 2 0 Median 0.90687 0.80032 8.7628 2 0 Median 0.89202 0.95369 4.8402 5 0 Median 0.93852 0.83078 7.7348 3 0 Median NaN NaN NaN 0 0 Median 1.1164 0.89258 NaN 1 0 Median 508400000 258300000 250100000 132810000 67626000 65184000 19493000 9741200 9752000 268070000 137640000 130430000 84136000 41597000 42540000 0 0 0 3889800 1699900 2189900 15718 1635 16383 81419;81420;81421;81422;81423;81424;81425;81426;81427;81428;81429;81430;81431;81432 82527;82528;82529;82530;82531;82532;82533;82534;82535;82536;82537;82538;82539;82540;82541;82542;82543;82544;82545;82546;82547;82548;82549;82550;82551 82546 25 INELTGIK QIKQVEDDIQQLLKKINELTGIKESDTGLA IQQLLKKINELTGIKESDTGLAPPALWDLA K I N I K E 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 8 0 886.51238 P35998;C9JLS9 P35998 59 66 PSMC2 26S protease regulatory subunit 7 yes no 2 0.015598 50.04 By matching By MS/MS 1 2 1.2648 1.0776 18.916 3 Median 0.85238 0.82414 NaN 1 0 Median 1.3315 1.1312 6.861 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8652600 4068600 4584000 2101800 1207300 894470 6550900 2861300 3689500 0 0 0 0 0 0 0 0 0 0 0 0 15719 2253 16384 81433;81434;81435 82552 82552 1 INEMVHFDLPGQEER ASNQPEQFDWAINDRINEMVHFDLPGQEER INEMVHFDLPGQEERERLVRMYFDKYVLKP R I N E R E 0 1 1 1 0 1 3 1 1 1 1 0 1 1 1 0 0 0 0 1 0 0 15 0 1812.8465 H0Y2W2;Q5SV16;Q9NVI7 H0Y2W2 453 467 ATAD3A ATPase family AAA domain-containing protein 3A no no 2;3 0.00027625 43.791 By matching By matching By MS/MS By matching 1 1 4 1 0.94787 0.97827 15.758 7 Median 0.90225 0.8561 NaN 1 0 Median 1.4261 1.2355 NaN 1 0 Median 0.90868 0.95064 14.391 4 0 Median 1.2927 1.094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26815000 13045000 13770000 12612000 6546000 6066300 4522700 1676000 2846700 9245500 4637900 4607600 434170 184910 249260 0 0 0 0 0 0 15720 1140;4133 16385 81436;81437;81438;81439;81440;81441;81442 82553;82554 82553 2 INEMVHFDLPGQEERER ASNQPEQFDWAINDRINEMVHFDLPGQEER EMVHFDLPGQEERERLVRMYFDKYVLKPAT R I N E R L 0 2 1 1 0 1 4 1 1 1 1 0 1 1 1 0 0 0 0 1 0 0 17 1 2097.9902 H0Y2W2;Q5SV16;Q9NVI7 H0Y2W2 453 469 ATAD3A ATPase family AAA domain-containing protein 3A no no 3 0.026906 26.808 By MS/MS 1 1.1553 1.1383 NaN 1 Median 1.1553 1.1383 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4205700 1907600 2298100 4205700 1907600 2298100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15721 1140;4133 16386 81443 82555 82555 1 INENDPEYIR PPPPSMPHKERYFDRINENDPEYIRERNMS RYFDRINENDPEYIRERNMSPDLRQDFNMM R I N I R E 0 1 2 1 0 0 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 10 0 1261.5939 Q9UEY8 Q9UEY8 28 37 ADD3 Gamma-adducin yes yes 2 5.4366E-06 155.07 By matching By MS/MS By MS/MS 1 1 1 0.92904 0.80855 22.464 3 Median NaN NaN NaN 0 0 Median 0.92904 0.80855 NaN 1 0 Median 0.60147 0.60866 NaN 1 0 Median 1.1005 0.94838 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28630000 17451000 11179000 0 0 0 1968700 1099300 869440 21404000 13538000 7865800 5257300 2813500 2443800 0 0 0 0 0 0 15722 4257 16387 81444;81445;81446 82556;82557;82558;82559 82557 4 INETFVDKDFVPYQDIR TVFGEVTEGMDIIKKINETFVDKDFVPYQD ETFVDKDFVPYQDIRINHTVILDDPFDDPP K I N I R I 0 1 1 3 0 1 1 0 0 2 0 1 0 2 1 0 1 0 1 2 0 0 17 1 2098.0371 Q8WUA2 Q8WUA2 139 155 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 3 6.6651E-06 62.765 By MS/MS By MS/MS By matching 1 1 1 0.90087 0.84496 6.8433 3 Median 0.93292 0.93902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75463 0.84496 NaN 1 0 Median 0.90087 0.82601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11675000 6098300 5576600 4035300 2185400 1849900 0 0 0 7295900 3728000 3567900 343770 184920 158850 0 0 0 0 0 0 15723 3486 16388 81447;81448;81449 82560;82561;82562 82562 3 INEVQTDVGVDTK PAPLTAAEEELRQIKINEVQTDVGVDTKHQ IKINEVQTDVGVDTKHQTLQGVAFPISREA K I N T K H 0 0 1 2 0 1 1 1 0 1 0 1 0 0 0 0 2 0 0 3 0 0 13 0 1416.7096 Q12792;F8VS81 Q12792 159 171 TWF1 Twinfilin-1 yes no 2 1.9027E-08 126.66 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.92295 0.80431 15.207 6 Median 0.80979 0.80392 11.044 3 2 Median 0.95825 0.80469 NaN 1 0 Median 1.1373 1.0934 NaN 1 0 Median 0.89089 0.75286 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47895000 25512000 22383000 24042000 12060000 11982000 14296000 7847800 6448700 7498200 4328000 3170200 2058000 1276400 781640 0 0 0 0 0 0 15724 2759 16389 81450;81451;81452;81453;81454;81455 82563;82564;82565;82566;82567;82568;82569;82570 82564 8 INEWLTLVEK EVMFKTPVSITEHPKINEWLTLVEKEMRVT TEHPKINEWLTLVEKEMRVTLAKLLAESVT K I N E K E 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 0 1 1 0 1 0 0 10 0 1243.6812 Q14204 Q14204 1698 1707 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00033917 86.624 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0102 0.97862 56.711 5 Median 0.54749 0.54913 81.715 2 0 Median 1.0785 0.94647 NaN 1 0 Median 1.0102 1.0999 NaN 1 0 Median 1.377 1.27 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37134000 17404000 19729000 26652000 12789000 13863000 7544000 3262400 4281600 2697000 1260600 1436400 240700 92583 148120 0 0 0 0 0 0 15725 2865 16390 81456;81457;81458;81459;81460 82571;82572;82573 82573 3 INFAVFPSLQGGPHNHAIAAVAVALK DPKTGREIPYTFEDRINFAVFPSLQGGPHN GPHNHAIAAVAVALKQACTPMFREYSLQVL R I N L K Q 6 0 2 0 0 1 0 2 2 2 2 1 0 2 2 1 0 0 0 3 0 0 26 0 2641.4493 P34897;H0YIZ0;G3V2Y4 P34897 315 340 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 3 0.033643 11.632 By MS/MS 1 1.0056 0.8539 NaN 1 Median NaN NaN NaN 0 0 Median 1.0056 0.8539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7372500 3646600 3725900 0 0 0 7372500 3646600 3725900 0 0 0 0 0 0 0 0 0 0 0 0 15726 2228 16391 81461 82574;82575 82574 2 INFDDNAEFR FGETPEGQVVCFDAKINFDDNAEFRQKDIF CFDAKINFDDNAEFRQKDIFAMDDKSENEP K I N F R Q 1 1 2 2 0 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 10 0 1239.552 Q96I99;E9PDQ8 Q96I99 260 269 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.0022568 60.91 By MS/MS By MS/MS By MS/MS 1 1 1 1.3841 1.2222 38.956 3 Plateau 0.86037 0.85269 NaN 1 0 Median 1.4202 1.2392 NaN 1 0 Median 0.52434 0.56869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18870000 9107400 9762200 5940100 3294900 2645200 9863300 4015800 5847500 3066300 1796700 1269500 0 0 0 0 0 0 0 0 0 15727 3678 16392 81462;81463;81464 82576;82577;82578;82579;82580 82576 5 INFDKYHPGYFGK HPGGRGNAGGLHHHRINFDKYHPGYFGKVG HRINFDKYHPGYFGKVGMKHYHLKRNQSFC R I N G K V 0 0 1 1 0 0 0 2 1 1 0 2 0 2 1 0 0 0 2 0 0 0 13 1 1584.7725 E9PLL6;P46776 E9PLL6 43 55 RPL27A 60S ribosomal protein L27a yes no 2;3;4 5.0732E-08 104.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 6 2 1 4 1 0.99006 0.96485 19.342 20 Median 0.9597 0.95931 24.291 7 1 Median 1.0647 0.92303 14.288 5 0 Median 0.84007 0.83692 20.123 2 0 Median 1.2772 1.1503 NaN 1 0 Median 0.99083 1.0901 11.15 4 0 Median 1.3889 1.1715 NaN 1 0 Median 594470000 275510000 318960000 426150000 194370000 231780000 44439000 20114000 24326000 22258000 11950000 10308000 4562900 2003400 2559500 93986000 45559000 48427000 3078000 1512800 1565100 15728 961 16393 81465;81466;81467;81468;81469;81470;81471;81472;81473;81474;81475;81476;81477;81478;81479;81480;81481;81482;81483;81484;81485;81486;81487;81488 82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597;82598;82599;82600;82601 82583 21 INFDSNSAYR MVEDSDGAVLCMDAKINFDSNSAYRQKKIF CMDAKINFDSNSAYRQKKIFDLQDWTQEDE K I N Y R Q 1 1 2 1 0 0 0 0 0 1 0 0 0 1 0 2 0 0 1 0 0 0 10 0 1185.5415 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;Q5T9Q5;Q5T9Q8 A0A2R8YDQ9 217 226 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.00033784 110.87 By MS/MS By MS/MS 2 2 1.0858 1.0424 25.41 4 Median 1.0858 1.0424 23.092 2 0 Median 1.1197 0.96237 36.605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48139000 18774000 29366000 34588000 11848000 22740000 13551000 6925800 6625300 0 0 0 0 0 0 0 0 0 0 0 0 15729 379 16394 81489;81490;81491;81492 82602;82603;82604;82605 82602 4 INFVGGNK AVPTNMAAKKTSTPKINFVGGNKLQSTGNK KKTSTPKINFVGGNKLQSTGNKAEDIKGTE K I N N K L 0 0 2 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 847.4552 Q96KR1 Q96KR1 502 509 ZFR Zinc finger RNA-binding protein yes yes 2 0.011851 56.122 By MS/MS 1 0.92162 0.99893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92162 0.99893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3938800 1904900 2034000 0 0 0 0 0 0 3938800 1904900 2034000 0 0 0 0 0 0 0 0 0 15730 3697 16395 81493 82606;82607 82607 2 INFVIDNNK PEDVEGNVQLETGDKINFVIDNNKHTGAVS LETGDKINFVIDNNKHTGAVSARNIMLLKK K I N N K H 0 0 3 1 0 0 0 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 9 0 1075.5662 O75534;E9PLT0;E9PNG3;E9PJK7 O75534 158 166 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.049787 31.074 By MS/MS 1 0.89925 0.78615 NaN 1 Median NaN NaN NaN 0 0 Median 0.89925 0.78615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5259600 2765100 2494500 0 0 0 5259600 2765100 2494500 0 0 0 0 0 0 0 0 0 0 0 0 15731 1684 16396 81494 82608 82608 1 INGDWQR CDRDQMYYNLLKLYKINGDWQRADAVWNKI YNLLKLYKINGDWQRADAVWNKIQEENVIP K I N Q R A 0 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 7 0 887.42496 P42704 P42704 967 973 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.016999 66.993 By MS/MS 1 1.7049 1.4325 NaN 1 Median NaN NaN NaN 0 0 Median 1.7049 1.4325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6700100 2452800 4247400 0 0 0 6700100 2452800 4247400 0 0 0 0 0 0 0 0 0 0 0 0 15732 2315 16397 81495 82609;82610 82610 2 INGGGGGSVPGIER MENMGRFGSGMNMGRINGGGGGSVPGIERM RINGGGGGSVPGIERMGPGIDRLGGAGMER R I N E R M 0 1 1 0 0 0 1 6 0 2 0 0 0 0 1 1 0 0 0 1 0 0 14 0 1268.6473 M0QZM1 M0QZM1 158 171 HNRNPM yes yes 2 4.031E-05 85.288 By matching By MS/MS 1 1 1.0772 1.0189 3.3027 2 Median NaN NaN NaN 0 0 Median 1.1727 0.99539 NaN 1 0 Median 0.98945 1.043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10427000 4931000 5495700 0 0 0 6506600 2814600 3692000 3920100 2116400 1803700 0 0 0 0 0 0 0 0 0 15733 1423 16398 81496;81497 82611 82611 1 INHESQWPSHVSQR PGMNRTDDMMVPDQRINHESQWPSHVSQRQ RINHESQWPSHVSQRQPYMSSSASMQPITR R I N Q R Q 0 1 1 0 0 2 1 0 2 1 0 0 0 0 1 3 0 1 0 1 0 0 14 0 1703.8128 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63 A0A3F2YNW7 1589 1602 ARID1B AT-rich interactive domain-containing protein 1B yes no 4 0.034299 16.886 By MS/MS By matching 2 2 0.96323 1.0681 38.694 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96323 1.0681 31.689 2 0 Median 1.1194 1.0145 58.831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3150900 1674500 1476400 0 0 0 0 0 0 2532800 1383200 1149600 618110 291310 326790 0 0 0 0 0 0 15734 449 16399 81498;81499;81500;81501 82612 82612 1 INHLEYEDQYKDDNFGEGNDGGILDDK LLLESEQSTSNLNEKINHLEYEDQYKDDNF DNFGEGNDGGILDDKLISNNDGGIFDDPPA K I N D K L 0 0 3 6 0 1 3 4 1 2 2 2 0 1 0 0 0 0 2 0 0 0 27 1 3112.3534 O60216 O60216 206 232 RAD21 Double-strand-break repair protein rad21 homolog yes yes 3;4 8.0512E-26 80.132 By MS/MS By matching 2 2 0.85087 0.89834 12.784 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75326 0.85946 4.8244 2 0 Median 1.0307 1.0069 14.705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31206000 17733000 13473000 0 0 0 0 0 0 30737000 17510000 13228000 468310 222890 245410 0 0 0 0 0 0 15735 1603 16400 81502;81503;81504;81505 82613;82614;82615 82613 3 INHSNNAIVKPPEMTPQAAAK ALAFNGVMFGDRPLKINHSNNAIVKPPEMT AIVKPPEMTPQAAAKELEEVMKRVREAQSF K I N A K E 4 0 3 0 0 1 1 0 1 2 0 2 1 0 3 1 1 0 0 1 0 0 21 1 2230.1528 Q8WXA9 Q8WXA9 137 157 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 3;4 6.2011E-07 47.808 By MS/MS By MS/MS 1 2 0.5894 0.58943 17.848 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5894 0.65991 NaN 1 0 Median 0.536 0.52362 16.742 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13268000 7826100 5442100 0 0 0 0 0 0 7767200 4742900 3024400 5500900 3083200 2417700 0 0 0 0 0 0 15736 3516 16401 81506;81507;81508 82616;82617;82618;82619;82620 82616 5 INIPPPSVNR YNRLVGEIMQETGTRINIPPPSVNRTEIVF ETGTRINIPPPSVNRTEIVFTGEKEQLAQA R I N N R T 0 1 2 0 0 0 0 0 0 2 0 0 0 0 3 1 0 0 0 1 0 0 10 0 1105.6244 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 256 265 HDLBP Vigilin yes no 2 0.00071413 97.635 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0169 0.88771 49.106 6 Median 1.035 0.99743 68.848 2 0 Median 1.0169 0.88771 40.518 2 0 Median NaN NaN NaN 0 0 Median 0.68881 0.60514 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0634 1.7194 NaN 1 0 Median 31726000 18035000 13691000 16478000 9616900 6860900 11832000 6679200 5152800 0 0 0 2614000 1459600 1154400 0 0 0 802440 279120 523320 15737 4 16402 81509;81510;81511;81512;81513;81514 82621;82622;82623;82624;82625 82621 5 INIPPQR PPQRPQRDQRVREQRINIPPQRGPRPIREA DQRVREQRINIPPQRGPRPIREAGEQGDIE R I N Q R G 0 1 1 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 836.48684 Q13283 Q13283 308 314 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 0.0026423 106.76 By MS/MS By MS/MS By matching By MS/MS 3 3 1 3 0.77388 0.70755 16.821 10 Median 0.79281 0.78671 12.232 3 0 Median 0.80354 0.69541 9.5051 3 0 Median 0.75286 0.79075 NaN 1 0 Median 0.72747 0.63742 16.675 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28962000 16375000 12588000 6761300 3876700 2884500 19899000 11228000 8671300 884340 539010 345330 1417700 731150 686580 0 0 0 0 0 0 15738 2803 16403 81515;81516;81517;81518;81519;81520;81521;81522;81523;81524 82626;82627;82628;82629;82630;82631;82632 82629 7 INISEGNCPER KGESVKKMREESGARINISEGNCPERIITL SGARINISEGNCPERIITLAGPTNAIFKAF R I N E R I 0 1 2 0 1 0 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1287.5877 Q15365;F8VTZ0;H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;J3QT27;E9PFP8;P57721;Q15366 Q15366 47 57 PCBP1;PCBP2;PCBP3 Poly(rC)-binding protein 1;Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 0.00015693 114.84 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2575 1.0802 25.967 5 Median NaN NaN NaN 0 0 Median 1.2602 1.0827 37.767 2 1 Median 1.2575 1.2458 NaN 1 0 Median 0.87147 0.77071 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2955 1.0802 NaN 1 0 Median 16976000 6744000 10232000 0 0 0 8750900 3770900 4980000 5410200 1770200 3640000 801040 381300 419740 0 0 0 2013400 821580 1191800 15739 2942;1077;2941 16404 81525;81526;81527;81528;81529 82633;82634;82635;82636;82637;82638;82639;82640 82636 8 INISQVIAVVGQQNVEGK NNFKSMVVSGAKGSKINISQVIAVVGQQNV SQVIAVVGQQNVEGKRIPFGFKHRTLPHFI K I N G K R 1 0 2 0 0 3 1 2 0 3 0 1 0 0 0 1 0 0 0 4 0 0 18 0 1895.0476 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 779 796 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2;3 0.015222 20.427 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 3 1.0011 1.0539 13.283 8 Median 1.0852 1.0269 NaN 1 0 Median 1.5814 1.4022 NaN 1 0 Median 0.98633 1.0941 2.0046 2 0 Median 1.2232 1.1006 NaN 1 0 Median 0.9261 0.95185 6.9718 3 0 Median NaN NaN NaN 0 0 Median 11030000 4847000 6183100 962950 446290 516670 5450700 2181900 3268800 2273400 1033000 1240400 191800 79676 112130 2151300 1106100 1045100 0 0 0 15740 486 16405 81530;81531;81532;81533;81534;81535;81536;81537 82641;82642 82642 2 INKELSDLAR ______________________________ MALKRINKELSDLARDPPAQCSAGPVGDDM R I N A R D 1 1 1 1 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1157.6404 P61077;D6R9F6;D6R933;D6RGD0;D6R980;D6RIZ3;D6RA11 P61077 6 15 UBE2D3 Ubiquitin-conjugating enzyme E2 D3 yes no 2 0.0016545 93.098 By MS/MS By MS/MS By MS/MS 2 2 1 1.5026 1.4298 31.271 5 Linear 0.89244 0.89271 48.525 2 0 Median 1.1739 1.0546 6.781 2 0 Median 1.3877 1.4368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41261000 17032000 24228000 15620000 6875700 8744500 8582000 3697200 4884700 17058000 6459200 10599000 0 0 0 0 0 0 0 0 0 15741 2541 16406 81538;81539;81540;81541;81542 82643;82644;82645;82646;82647 82645 5 INKHNNQQALSHSIEEGLK SRDEYEAHQERVLARINKHNNQQALSHSIE NNQQALSHSIEEGLKIQAMNRLQRGKKQQI R I N L K I 1 0 3 0 0 2 2 1 2 2 2 2 0 0 0 2 0 0 0 0 0 0 19 1 2159.1083 Q99496;X6RFN3 Q99496 131 149 RNF2 E3 ubiquitin-protein ligase RING2 yes no 4 0.0017899 26.593 By MS/MS By MS/MS By MS/MS 1 2 1 1.0446 1.0292 9.338 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0038 1.0939 NaN 1 0 Median 1.1501 1.0292 7.2538 2 0 Median 0.85119 0.89799 NaN 1 0 Median NaN NaN NaN 0 0 Median 15599000 8329200 7269900 0 0 0 0 0 0 4014300 2000900 2013400 5203200 2607200 2595900 6381700 3721100 2660600 0 0 0 15742 3748 16407 81543;81544;81545;81546 82648;82649;82650;82651;82652 82651 5 INLAFMSTR VGTPVGTITLSCAYRINLAFMSTRQFERTP LSCAYRINLAFMSTRQFERTPPIMGIIIDH R I N T R Q 1 1 1 0 0 0 0 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 9 0 1051.5485 O75143 O75143 191 199 ATG13 Autophagy-related protein 13 yes yes 2 0.010073 50.127 By MS/MS By matching By MS/MS By matching By MS/MS By matching 7 2 16 5 10 5 1.1267 1.0303 15.823 45 Median 1.2249 1.1769 24.177 7 0 Median 1.0651 0.8833 5.7794 2 0 Median 1.1274 1.1599 10.499 16 0 Median 1.1874 1.0177 6.1626 5 0 Median 0.87292 0.91022 5.7213 10 0 Median 1.1844 0.92749 15.344 5 0 Median 1547400000 733950000 813500000 171530000 77487000 94041000 22506000 10782000 11724000 1082400000 501680000 580720000 13547000 6172800 7374500 239280000 129300000 109980000 18185000 8523000 9661900 15743 1646 16408;16409 81547;81548;81549;81550;81551;81552;81553;81554;81555;81556;81557;81558;81559;81560;81561;81562;81563;81564;81565;81566;81567;81568;81569;81570;81571;81572;81573;81574;81575;81576;81577;81578;81579;81580;81581;81582;81583;81584;81585;81586;81587;81588;81589;81590;81591 82653;82654;82655;82656;82657;82658;82659;82660;82661;82662;82663;82664;82665;82666;82667;82668;82669;82670;82671;82672;82673;82674;82675 82654 524 23 INLGGSQAAGYLQR LPILEGRLDAKNCKRINLGGSQAAGYLQRL RINLGGSQAAGYLQRLLQLKYPGHLAAITL R I N Q R L 2 1 1 0 0 2 0 3 0 1 2 0 0 0 0 1 0 0 1 0 0 0 14 0 1446.7579 Q9H9F9 Q9H9F9 211 224 ACTR5 Actin-related protein 5 yes yes 2 3.4008E-56 196.27 By MS/MS By MS/MS 1 1 1.7954 1.6546 29.459 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0039 2.0378 NaN 1 1 Median 1.6086 1.3435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14321000 4980800 9340200 0 0 0 0 0 0 12947000 4445700 8501100 1374200 535110 839140 0 0 0 0 0 0 15744 3999 16410 81592;81593 82676;82677;82678 82676 3 INLIAPPR LRAGLNCSTENMPIKINLIAPPRYVMTTTT TENMPIKINLIAPPRYVMTTTTLERTEGLS K I N P R Y 1 1 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 8 0 892.54944 P05198;G3V4T5;H0YJS4 P05198 227 234 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.0027525 105.2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 1 0.94182 0.82825 23.032 12 Median 0.84139 0.78552 17.075 3 0 Median 0.95939 0.82825 38.439 4 0 Median 0.91499 0.95484 4.9046 2 0 Median 0.92291 0.77839 5.9246 2 0 Median NaN NaN NaN 0 0 Median 1.0666 0.8915 NaN 1 0 Median 222540000 116720000 105810000 70618000 37346000 33272000 17627000 8625400 9001300 50528000 26738000 23790000 81887000 43046000 38841000 0 0 0 1876100 965430 910720 15745 1862 16411 81594;81595;81596;81597;81598;81599;81600;81601;81602;81603;81604;81605 82679;82680;82681;82682;82683;82684;82685;82686;82687;82688;82689;82690;82691;82692;82693;82694;82695 82679 17 INLNLIYDHNPK KLMFKEAFECMRKLRINLNLIYDHNPKVFL KLRINLNLIYDHNPKVFLGNVETFIKQIDS R I N P K V 0 0 3 1 0 0 0 0 1 2 2 1 0 0 1 0 0 0 1 0 0 0 12 0 1452.7725 O95163;F5H2T0 O95163 750 761 IKBKAP Elongator complex protein 1 yes no 3 0.00096711 63.864 By MS/MS 1 0.79584 0.7904 NaN 1 Median 0.79584 0.7904 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4718700 2362100 2356700 4718700 2362100 2356700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15746 1749 16412 81606 82696 82696 1 INLPAPNPDHVGGYK GGVKPMGSEPVPKSRINLPAPNPDHVGGYK INLPAPNPDHVGGYKLAVATFAGIENKFGL R I N Y K L 1 0 2 1 0 0 0 2 1 1 1 1 0 0 3 0 0 0 1 1 0 0 15 0 1590.8154 Q9UJS0 Q9UJS0 627 641 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2;3 9.1974E-05 54.598 By MS/MS By MS/MS 2 1 0.49887 0.47239 19.96 3 Median 0.48003 0.45332 5.8263 2 0 Median 0.74166 0.6358 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22295000 14592000 7703100 18712000 12634000 6078200 3582700 1957800 1624900 0 0 0 0 0 0 0 0 0 0 0 0 15747 4297 16413 81607;81608;81609 82697;82698;82699 82697 3 INLPVTALPPLWVR GLYTMAHNPNMTHLKINLPVTALPPLWVRC KINLPVTALPPLWVRCDSSDPEGTCWLGAE K I N V R C 1 1 1 0 0 0 0 0 0 1 3 0 0 0 3 0 1 1 0 2 0 0 14 0 1587.9501 Q9H900;H3BSG1 Q9H900 126 139 ZWILCH Protein zwilch homolog yes no 2 0.0017962 46.606 By matching By MS/MS 1 1 0.71822 0.66786 51.182 2 Median 0.46552 0.46506 NaN 1 0 Median 1.1081 0.95909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2751600 1525600 1225900 639600 416760 222840 2112000 1108900 1003100 0 0 0 0 0 0 0 0 0 0 0 0 15748 3992 16414 81610;81611 82700;82701 82701 2 INLQGDIVDR FGLLYSEVTASSLVKINLQGDIVDRGSTNL SSLVKINLQGDIVDRGSTNLGVNQAGFTLH K I N D R G 0 1 1 2 0 1 0 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25 E7EV99 200 209 ADD1 Alpha-adducin yes no 2 6.159E-05 126.07 By MS/MS By MS/MS By MS/MS 1 2 2 1.0079 1.0394 17.931 5 Median 1.0079 0.97082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84073 0.85952 26.878 2 2 Median 1.2724 1.0892 1.6668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73563000 36214000 37349000 13204000 7059200 6144500 0 0 0 48885000 24240000 24646000 11474000 4915000 6559200 0 0 0 0 0 0 15749 866 16415 81612;81613;81614;81615;81616 82702;82703;82704;82705;82706 82703 5 INLQQQPPPLQIK PPLQAMQQPPPQKVRINLQQQPPPLQIKSV VRINLQQQPPPLQIKSVPLPTLKMQTTLVP R I N I K S 0 0 1 0 0 4 0 0 0 2 2 1 0 0 3 0 0 0 0 0 0 0 13 0 1515.8773 O94842 O94842 482 494 TOX4 TOX high mobility group box family member 4 yes yes 2 0.0013887 54.608 By MS/MS By MS/MS 2 3 0.71191 0.67225 10.719 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63292 0.67264 0.082888 2 0 Median 0.74577 0.64684 15.099 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19441000 12560000 6880600 0 0 0 0 0 0 16585000 10953000 5632100 2855500 1607000 1248500 0 0 0 0 0 0 15750 1730 16416 81617;81618;81619;81620;81621 82707;82708;82709;82710 82709 4 INLVLSR TWFSIPEKNRPLKGRINLVLSRELKEPPQG KNRPLKGRINLVLSRELKEPPQGAHFLSRS R I N S R E 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 P00374;B4DM58;C9JJ68;Q86XF0 P00374 72 78 DHFR;DHFRL1 Dihydrofolate reductase;Dihydrofolate reductase, mitochondrial yes no 2 0.0017662 111.04 By MS/MS By MS/MS By MS/MS By matching 2 4 1 2 1.2042 1.0746 24.044 9 Median 1.0809 1.0517 3.0433 2 0 Median 1.4931 1.2726 29.572 4 0 Median 0.91013 0.87077 NaN 1 0 Median 1.2616 1.0753 12.719 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47612000 22193000 25419000 27957000 13629000 14328000 13717000 5762600 7954100 4171900 2014100 2157800 1765800 786640 979160 0 0 0 0 0 0 15751 1815 16417 81622;81623;81624;81625;81626;81627;81628;81629;81630 82711;82712;82713;82714;82715;82716;82717 82712 7 INLWHLEITDR INSDYETYLSADDLRINLWHLEITDRSFNI DDLRINLWHLEITDRSFNIVDIKPANMEEL R I N D R S 0 1 1 1 0 0 1 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 11 0 1408.7463 P63151;A0A590UJY3;A0A590UJJ1;Q66LE6 P63151 200 210 PPP2R2A;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 2 0.00070215 64.297 By MS/MS By matching 1 1 0.97843 0.89174 1.4582 2 Median NaN NaN NaN 0 0 Median 1.0715 0.90098 NaN 1 0 Median 0.89344 0.88259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23918000 11458000 12460000 0 0 0 13624000 6223600 7400200 10294000 5234600 5059900 0 0 0 0 0 0 0 0 0 15752 2619 16418 81631;81632 82718;82719 82719 2 INMLVIELK ASYEFVQRLLKGYMKINMLVIELKSEALKD LKGYMKINMLVIELKSEALKDRHWKQLMKR K I N L K S 0 0 1 0 0 0 1 0 0 2 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1071.6362 Q14204 Q14204 1396 1404 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0042876 70.919 By matching By MS/MS By matching 2 2 1 1.2367 1.1718 13.308 5 Median NaN NaN NaN 0 0 Median 1.3494 1.1711 21.785 2 0 Median 1.1733 1.2627 12.888 2 0 Median 1.2367 1.1718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29715000 13737000 15979000 0 0 0 16218000 7437200 8781200 12340000 5733900 6606100 1156900 565430 591420 0 0 0 0 0 0 15753 2865 16419;16420 81633;81634;81635;81636;81637 82720;82721;82722 82720 1553 3 INMMLANLYK IAILDGIPSRQRTPKINMMLANLYKKAGQE QRTPKINMMLANLYKKAGQERPSVTSYKEV K I N Y K K 1 0 2 0 0 0 0 0 0 1 2 1 2 0 0 0 0 0 1 0 0 0 10 0 1209.625 Q9UJX3 Q9UJX3 171 180 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 2 0.0034431 56.721 By matching By MS/MS By matching By matching 1 1 1 2 1.1513 1.0271 18.872 4 Median NaN NaN NaN 0 0 Median 1.0656 0.90198 NaN 1 0 Median 1.0119 0.98537 NaN 1 0 Median 1.5892 1.3965 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2439 1.0707 NaN 1 0 Median 17372000 8959100 8412500 0 0 0 5624100 2722000 2902100 10513000 5471400 5041200 215530 80029 135500 0 0 0 1019500 685700 333800 15754 4301 16421 81638;81639;81640;81641;81642 82723 82723 1 INMNGINNSSGMVDAR PKYPEAPPSVRFVTKINMNGINNSSGMVDA NMNGINNSSGMVDARSIPVLAKWQNSYSIK K I N A R S 1 1 4 1 0 0 0 2 0 2 0 0 2 0 0 2 0 0 0 1 0 0 16 0 1691.7719 Q15819;G3V113;H0YBP9 Q15819 86 101 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes no 2 2.5356E-10 158.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1.1767 1.0586 68.062 8 Median 1.1569 1.1151 14.339 2 0 Median 1.1168 0.92616 NaN 1 0 Median 1.2398 1.2553 103.27 3 0 Median 1.1419 0.94302 13.246 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89017000 39048000 49969000 59536000 28564000 30973000 5963600 2838200 3125400 21242000 6521300 14721000 2275500 1125000 1150500 0 0 0 0 0 0 15755 2973 16422;16423 81643;81644;81645;81646;81647;81648;81649;81650 82724;82725;82726;82727;82728;82729;82730;82731 82726 1633 8 INMNGVNSSNGVVDPR PKYPEAPPFVRFVTKINMNGVNSSNGVVDP NMNGVNSSNGVVDPRAISVLAKWQNSYSIK K I N P R A 0 1 4 1 0 0 0 2 0 1 0 0 1 0 1 2 0 0 0 3 0 0 16 0 1671.7999 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3 Q13404 88 103 UBE2V1;TMEM189-UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 2 8.5098E-05 74.611 By MS/MS 1 0.83112 0.79055 NaN 1 Median 0.83112 0.79055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38106000 19650000 18456000 38106000 19650000 18456000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15756 2809 16424 81651 82732;82733;82734 82734 3 INMVEELEK EGQAYDVDFTPPFRRINMVEELEKALGMKL TPPFRRINMVEELEKALGMKLPETNLFETE R I N E K A 0 0 1 0 0 0 3 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 9 0 1103.5533 Q15046 Q15046 394 402 KARS Lysine--tRNA ligase yes yes 2 0.0029859 68.224 By MS/MS 1 1.1625 1.096 NaN 1 Median 1.1625 1.096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4821600 2251400 2570100 4821600 2251400 2570100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15757 2919 16425 81652 82735 82735 1 INNEHVIDATLTGGPAR EKIYEEQNRGIYMFRINNEHVIDATLTGGP NEHVIDATLTGGPARYINHSCAPNCVAEVV R I N A R Y 2 1 2 1 0 0 1 2 1 2 1 0 0 0 1 0 2 0 0 1 0 0 17 0 1776.9119 O14686;H0YEF2 O14686 5455 5471 KMT2D Histone-lysine N-methyltransferase 2D yes no 3 5.2039E-14 115.07 By MS/MS By MS/MS 1 3 1.0414 0.89631 14.55 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76234 0.7988 NaN 1 0 Median 1.1732 1.0145 13.399 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34261000 19037000 15224000 0 0 0 0 0 0 27074000 15677000 11397000 7187100 3360200 3826900 0 0 0 0 0 0 15758 1490 16426 81653;81654;81655;81656 82736;82737;82738;82739;82740 82736 5 INNEIDQLMNQMQQIETQQR LEAKLNENLRRNIERINNEIDQLMNQMQQI DQLMNQMQQIETQQRKFKASRDSILSEMKM R I N Q R K 0 1 3 1 0 6 2 0 0 3 1 0 2 0 0 0 1 0 0 0 0 0 20 0 2473.169 Q9UQE7 Q9UQE7 707 726 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 3.2501E-07 59.306 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 1 2 0.98131 0.97781 21.809 8 Median 1.4002 1.4166 NaN 1 0 Median 1.0978 0.97692 NaN 1 0 Median 0.88984 0.9787 23.498 3 0 Median 1.0389 0.90909 NaN 1 0 Median 0.99778 1.0439 17.222 2 0 Median NaN NaN NaN 0 0 Median 22602000 11448000 11153000 918490 419120 499370 115030 50006 65027 11348000 5862000 5486300 272740 128840 143900 9947400 4988500 4958900 0 0 0 15759 4362 16427;16428 81657;81658;81659;81660;81661;81662;81663;81664 82741;82742;82743;82744;82745 82744 1940 5 INNFSADIK LRWANFHLENSGWQKINNFSADIKDSKAYF NSGWQKINNFSADIKDSKAYFHLLNQIAPK K I N I K D 1 0 2 1 0 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 0 9 0 1020.524 P13797;A0A0A0MSQ0 P13797 289 297 PLS3 Plastin-3 yes no 2 0.00050567 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.0575 1.0034 21.889 6 Median 1.0841 1.0086 NaN 1 1 Median 1.2153 1.007 NaN 1 0 Median 1.0791 1.0831 32.4 3 0 Plateau 1.0364 0.88364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141310000 62694000 78614000 33231000 15839000 17392000 83794000 36056000 47738000 21973000 9549500 12423000 2310400 1250300 1060000 0 0 0 0 0 0 15760 1995 16429 81665;81666;81667;81668;81669;81670 82746;82747;82748;82749;82750 82746 5 INNFSADIKDSK LRWANFHLENSGWQKINNFSADIKDSKAYF WQKINNFSADIKDSKAYFHLLNQIAPKGQK K I N S K A 1 0 2 2 0 0 0 0 0 2 0 2 0 1 0 2 0 0 0 0 0 0 12 1 1350.6779 P13797 P13797 289 300 PLS3 Plastin-3 yes yes 2;3 2.0251E-05 146.11 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 3 2 1 1.0683 1.0488 18.35 14 Median 1.0094 0.95274 6.1746 4 0 Median 1.2357 1.151 10.633 4 0 Median 1.0869 1.2076 36.848 3 0 Median NaN NaN NaN 0 0 Median 0.85938 0.96575 18.566 2 0 Median 1.4934 1.1949 NaN 1 0 Median 270410000 130460000 139950000 192900000 95358000 97538000 54270000 25026000 29244000 20294000 8572400 11721000 0 0 0 2705900 1404300 1301600 242980 102090 140900 15761 1995 16430 81671;81672;81673;81674;81675;81676;81677;81678;81679;81680;81681;81682;81683;81684 82751;82752;82753;82754;82755;82756;82757;82758;82759;82760;82761;82762 82758 12 INNVPAEGENEVNNELANR QNDFSYYRRTLSRMRINNVPAEGENEVNNE PAEGENEVNNELANRMSLFYAEATPMLKTL R I N N R M 2 1 6 0 0 0 4 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 19 0 2094.993 Q9NUQ9;A0A1W2PRQ0 Q9NUQ9 168 186 FAM49B Protein FAM49B yes no 2 7.5472E-13 99.531 By MS/MS 1 0.93649 0.89519 NaN 1 Median 0.93649 0.89519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3583700 2005000 1578700 3583700 2005000 1578700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15762 4120 16431 81685 82763;82764 82763 2 INPDGSQSVVEVPYAR AQVDPKKTIQMGSFRINPDGSQSVVEVPYA NPDGSQSVVEVPYARSEAHLTELLEEICDR R I N A R S 1 1 1 1 0 1 1 1 0 1 0 0 0 0 2 2 0 0 1 3 0 0 16 0 1729.8635 F8W031;F8VXJ7;Q9Y2B0;F8W1K5 F8W031 58 73 CNPY2 Protein canopy homolog 2 yes no 2;3 1.106E-10 138.75 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.93472 0.85589 16.242 8 Median 0.90878 0.86625 25.561 2 0 Median 0.83913 0.71096 23.055 2 0 Median 0.86396 0.85279 3.6956 2 0 Median 1.1007 0.89488 2.1302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 213720000 114210000 99516000 159010000 85902000 73109000 36438000 17739000 18699000 16296000 9654200 6641600 1976800 910390 1066400 0 0 0 0 0 0 15763 1078 16432 81686;81687;81688;81689;81690;81691;81692;81693 82765;82766;82767;82768;82769;82770;82771;82772;82773;82774;82775;82776;82777;82778;82779 82771 15 INPSSMFDVQVK KLKFSQFLETEYKVKINPSSMFDVQVKRIH KVKINPSSMFDVQVKRIHEYKRQLLNCLHV K I N V K R 0 0 1 1 0 1 0 0 0 1 0 1 1 1 1 2 0 0 0 2 0 0 12 0 1363.6806 P06737;E9PK47 P06737 558 569 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.002369 76.228 By MS/MS 2 0.95415 0.92439 NaN 1 Median 0.95415 0.92439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9602000 4088200 5513800 9602000 4088200 5513800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15764 1874 16433 81694;81695 82780;82781 82780 2 INPSSMFDVQVKR KLKFSQFLETEYKVKINPSSMFDVQVKRIH VKINPSSMFDVQVKRIHEYKRQLLNCLHVI K I N K R I 0 1 1 1 0 1 0 0 0 1 0 1 1 1 1 2 0 0 0 2 0 0 13 1 1519.7817 P06737;E9PK47 P06737 558 570 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 3 0.0069199 43.991 By MS/MS 1 0.9803 1.0195 NaN 1 Median 0.9803 1.0195 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3352600 1690900 1661700 3352600 1690900 1661700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15765 1874 16434 81696 82782 82782 1 INPYMSSPCHIEMILTEK KAPKMRRRTYRAHGRINPYMSSPCHIEMIL YMSSPCHIEMILTEKEQIVPKPEEEVAQKK R I N E K E 0 0 1 0 1 0 2 0 1 3 1 1 2 0 2 2 1 0 1 0 0 0 18 0 2162.021 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8 A0A087WXM6 136 153 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 3 0.0090312 22.874 By MS/MS By matching 1 1 0.72901 0.64481 0.98586 2 Median 0.68916 0.64033 NaN 1 0 Median 0.77116 0.64932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9748000 5383000 4365100 5797800 3081800 2716000 3950200 2301200 1649000 0 0 0 0 0 0 0 0 0 0 0 0 15766 67 16435 81697;81698 82783 82783 1 INQLSEENGDLSFK QCQDLKTEKSQMDRKINQLSEENGDLSFKL KINQLSEENGDLSFKLREFASHLQQLQDAL K I N F K L 0 0 2 1 0 1 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 14 0 1592.7682 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 313 326 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 2.7888E-16 183.33 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.95111 1.0101 20.935 6 Median NaN NaN NaN 0 0 Median 1.1604 1.0294 NaN 1 0 Median 0.92078 1.0094 NaN 1 0 Median 0.82866 0.81071 39.505 2 0 Median 0.95111 0.98913 3.0675 2 0 Median NaN NaN NaN 0 0 Median 123530000 62778000 60752000 0 0 0 4491900 1918600 2573300 83785000 43820000 39965000 4596800 2131700 2465100 30656000 14908000 15748000 0 0 0 15767 2905;77 16436 81699;81700;81701;81702;81703;81704 82784;82785;82786;82787;82788;82789;82790 82785 7 INQLYEQAK YYSFFDLNPKYDAIRINQLYEQAKWAILLE KYDAIRINQLYEQAKWAILLEEIECTEEEM R I N A K W 1 0 1 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1105.5768 H0YJ34;Q96AC1;A0A0U1RRM8 H0YJ34 244 252 FERMT2 Fermitin family homolog 2 yes no 2 0.004116 61.679 By MS/MS 1 1.5275 1.3381 NaN 1 Median NaN NaN NaN 0 0 Median 1.5275 1.3381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6685500 2699800 3985600 0 0 0 6685500 2699800 3985600 0 0 0 0 0 0 0 0 0 0 0 0 15768 1184 16437 81705 82791 82791 1 INQMATAPDSQR GFSRSNPYYIVKQGKINQMATAPDSQRLKL QGKINQMATAPDSQRLKLLREVAGTRVYDE K I N Q R L 2 1 1 1 0 2 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 12 0 1330.6299 Q9UQE7 Q9UQE7 144 155 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.3444E-06 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1.1784 1.0691 32.393 8 Median NaN NaN NaN 0 0 Median 1.3307 1.125 NaN 1 0 Median 0.79224 0.87153 NaN 1 0 Median 1.2083 1.0299 NaN 1 0 Median 0.90872 0.95327 21.493 2 0 Median 2.1613 1.8132 40.32 3 2 Median 22102000 11126000 10976000 0 0 0 4561500 1966900 2594700 4363600 2568100 1795500 1214800 518680 696110 9370800 5073200 4297600 2591200 998640 1592600 15769 4362 16438 81706;81707;81708;81709;81710;81711;81712;81713 82792;82793;82794;82795;82796;82797;82798;82799;82800;82801;82802;82803;82804;82805;82806 82795 15 INQQEEPGFEVITR SEMADFLSDAIPGLKINQQEEPGFEVITRI KINQQEEPGFEVITRIDLGERPVVQRREPV K I N T R I 0 1 1 0 0 2 3 1 0 2 0 0 0 1 1 0 1 0 0 1 0 0 14 0 1658.8264 Q8TC07;C9JA93 Q8TC07 289 302 TBC1D15 TBC1 domain family member 15 yes no 2 0.00011948 83.045 By MS/MS 1 1.0539 1.0008 NaN 1 Median 1.0539 1.0008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6798500 3505300 3293200 6798500 3505300 3293200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15770 3463 16439 81714 82807 82807 1 INQQENSLTLEK KNTSQETMLRDLQEKINQQENSLTLEKLKL QEKINQQENSLTLEKLKLAVADLEKQRDCS K I N E K L 0 0 2 0 0 2 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1415.7256 P49454 P49454 544 555 CENPF Centromere protein F yes yes 2 0.0029727 72.434 By MS/MS By MS/MS 1 1 0.57428 0.58279 9.4373 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58248 0.62301 NaN 1 1 Median 0.5662 0.54517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12168000 8726700 3441400 0 0 0 0 0 0 9995100 7304200 2690900 2172900 1422500 750430 0 0 0 0 0 0 15771 2383 16440 81715;81716 82808;82809 82808 2 INQVFHGSCITEGNELTK YSRLPKDDVHAKESKINQVFHGSCITEGNE VFHGSCITEGNELTKTLIKLCYDAFTENMA K I N T K T 0 0 2 0 1 1 2 2 1 2 1 1 0 1 0 1 2 0 0 1 0 0 18 0 2045.984 P78527 P78527 1896 1913 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 5.0301E-32 196.95 By MS/MS By MS/MS By MS/MS 3 2 2 1.349 1.2534 22.737 7 Median NaN NaN NaN 0 0 Median 1.3995 1.2534 4.9018 3 0 Median 0.87488 0.9312 3.7849 2 0 Median 1.6295 1.5538 20.247 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 215000000 101890000 113110000 0 0 0 72126000 29842000 42284000 129040000 66824000 62218000 13832000 5219600 8612200 0 0 0 0 0 0 15772 2647 16441 81717;81718;81719;81720;81721;81722;81723 82810;82811;82812;82813;82814;82815;82816;82817;82818;82819;82820 82816 11 INREQFWEQAK GTTYQKTDAAVEMKRINREQFWEQAKKEEE EMKRINREQFWEQAKKEEELRKEEERKKAL R I N A K K 1 1 1 0 0 2 2 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 11 1 1447.7208 Q16643;D6R9W4 Q16643 175 185 DBN1 Drebrin yes no 3 0.0090098 32.159 By MS/MS 2 0.8438 0.8681 32.306 2 Median 0.8438 0.8681 32.306 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5497600 2968000 2529600 5497600 2968000 2529600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15773 2991 16442 81724;81725 82821 82821 1 INSAPQQIEVFPPFR QTSLTASVTNKAGQRINSAPQQIEVFPPFR INSAPQQIEVFPPFRLMPRKVTLLIGATMQ R I N F R L 1 1 1 0 0 2 1 0 0 2 0 0 0 2 3 1 0 0 0 1 0 0 15 0 1741.9152 Q8TEM1 Q8TEM1 1068 1082 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 3.2062E-19 185.18 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.57229 0.62373 24.701 7 Median 0.51972 0.52232 30.242 2 0 Median NaN NaN NaN 0 0 Median 0.54847 0.57578 6.562 3 0 Median NaN NaN NaN 0 0 Median 0.7183 0.75444 NaN 1 1 Median 1.1241 0.92133 NaN 1 0 Median 45994000 28837000 17157000 5662300 3163000 2499300 0 0 0 37312000 24152000 13160000 0 0 0 2848400 1431100 1417300 171750 91030 80725 15774 3477 16443 81726;81727;81728;81729;81730;81731;81732 82822;82823;82824;82825;82826;82827;82828;82829;82830;82831 82825 10 INSITVDNCK YIYKCVNTTLQIKGKINSITVDNCKKLGLV QIKGKINSITVDNCKKLGLVFDDVVGIVEI K I N C K K 0 0 2 1 1 0 0 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 10 0 1162.5652 Q01518 Q01518 367 376 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.0020106 61.78 By MS/MS 1 1.1126 0.95837 NaN 1 Median NaN NaN NaN 0 0 Median 1.1126 0.95837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1741000 771060 969980 0 0 0 1741000 771060 969980 0 0 0 0 0 0 0 0 0 0 0 0 15775 2686 16444 81733 82832 82832 1 INSQLVAQQVAQQYATPPPPKK SICDVRKGTSTRKPRINSQLVAQQVAQQYA QQVAQQYATPPPPKKEKKEKVEKQDKEKPE R I N K K E 3 0 1 0 0 5 0 0 0 1 1 2 0 0 4 1 1 0 1 2 0 0 22 1 2405.3067 Q8N488 Q8N488 57 78 RYBP RING1 and YY1-binding protein yes yes 3 1.3927E-09 56.766 By MS/MS By MS/MS By MS/MS 1 2 1 0.59442 0.5715 22.278 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49458 0.51637 NaN 1 0 Median 0.78628 0.69844 28.396 2 0 Median 0.54298 0.57162 NaN 1 0 Median NaN NaN NaN 0 0 Median 17283000 11109000 6174400 0 0 0 0 0 0 12338000 8001400 4337000 1170200 674890 495290 3774800 2432700 1342100 0 0 0 15776 3372 16445 81734;81735;81736;81737 82833;82834;82835;82836;82837 82833 5 INSVEVYDGTWYR SEDSRFEVFKNGTLRINSVEVYDGTWYRCM LRINSVEVYDGTWYRCMSSTPAGSIEAQAR R I N Y R C 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 1 1 1 2 2 0 0 13 0 1600.7522 Q13308;H7C5L0 Q13308 468 480 PTK7 Inactive tyrosine-protein kinase 7 yes no 2 0.0023179 48.284 By MS/MS 1 1.0308 1.0074 NaN 1 Median 1.0308 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2782200 1451100 1331100 2782200 1451100 1331100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15777 2804 16446 81738 82838 82838 1 INSYGYGDHYIHIK QTDQKIRMGGKGIPRINSYGYGDHYIHIKI RINSYGYGDHYIHIKIRVPKRLTSRQQSLI R I N I K I 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 0 0 3 0 0 0 14 0 1678.8104 Q96EY1 Q96EY1 396 409 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 3;4 0.0013823 37.594 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 4 1.3108 1.1746 23.048 12 Median 1.2981 1.2017 4.5716 2 0 Median 1.3898 1.1859 NaN 1 0 Median 1.3822 1.4261 16.728 3 0 Median 1.0786 0.91075 25.309 2 1 Median 1.2166 1.2312 29.865 4 0 Median NaN NaN NaN 0 0 Median 112200000 49806000 62397000 31961000 14887000 17074000 7367100 2888600 4478500 53371000 22704000 30667000 4264200 1858700 2405500 15240000 7467900 7772200 0 0 0 15778 3643 16447 81739;81740;81741;81742;81743;81744;81745;81746;81747;81748;81749;81750 82839;82840;82841;82842;82843;82844;82845 82839 7 INVELSTK AAIAQLNGKEVKGKRINVELSTKGQKKGPG KEVKGKRINVELSTKGQKKGPGLAVQSGDK R I N T K G 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 902.5073 Q96PK6 Q96PK6 142 149 RBM14 RNA-binding protein 14 yes yes 2 0.0046806 80.165 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 1.2294 1.0325 6.9412 7 Median NaN NaN NaN 0 0 Median 1.2117 1.0277 0.65679 2 1 Median NaN NaN NaN 0 0 Median 1.3713 1.1361 NaN 1 0 Median 1.106 1.1196 NaN 1 0 Median 1.2779 1.0548 7.1035 3 1 Plateau 65968000 29647000 36321000 0 0 0 10532000 4440600 6091300 0 0 0 3536400 1446500 2089900 39768000 18643000 21126000 12131000 5116900 7014200 15779 3712 16448 81751;81752;81753;81754;81755;81756;81757 82846;82847;82848;82849;82850;82851;82852;82853;82854;82855 82846 10 INVLAAQYQSLLNSYGEPVDDK LMHHIRDCLPELKTRINVLAAQYQSLLNSY YQSLLNSYGEPVDDKSATLLQLITKFATEY R I N D K S 2 0 2 2 0 2 1 1 0 1 3 1 0 0 1 2 0 0 2 2 0 0 22 0 2436.2173 O00429 O00429 308 329 DNM1L Dynamin-1-like protein yes yes 2;3 0.00079038 27.969 By MS/MS By matching By matching By matching 2 1 1 1 0.78181 0.7644 8.6256 5 Median 0.70368 0.7137 9.7056 2 1 Median 0.78856 0.71277 NaN 1 0 Median 0.78181 0.81474 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82067 0.81035 NaN 1 0 Median NaN NaN NaN 0 0 Median 3024500 1659300 1365100 1915200 1182000 733150 178780 86853 91930 752300 321680 430620 0 0 0 178200 68761 109440 0 0 0 15780 1463 16449 81758;81759;81760;81761;81762 82856;82857;82858 82856 3 INVLHKPPYEHPK RKAIAERHGNLCLDKINVLHKPPYEHPKDL DKINVLHKPPYEHPKDLKLSDGRLRVGYVS K I N P K D 0 0 1 0 0 0 1 0 2 1 1 2 0 0 3 0 0 0 1 1 0 0 13 1 1570.862 O15294 O15294 535 547 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 3 0.00083824 47.189 By MS/MS By matching By MS/MS 1 1 1 0.80841 0.75356 6.5298 3 Plateau NaN NaN NaN 0 0 Median 0.80841 0.75356 NaN 1 0 Median 0.70123 0.80235 NaN 1 0 Median 0.7392 0.70414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7814100 4496400 3317700 0 0 0 3934700 2305000 1629700 1808600 1003500 805070 2070800 1187800 882990 0 0 0 0 0 0 15781 1537 16450 81763;81764;81765 82859;82860;82861;82862 82859 4 INVNEIFYDLVR QWNNCAFLESSAKSKINVNEIFYDLVRQIN KSKINVNEIFYDLVRQINRKTPVPGKARKK K I N V R Q 0 1 2 1 0 0 1 0 0 2 1 0 0 1 0 0 0 0 1 2 0 0 12 0 1493.7878 P61224;P62834;A6NIZ1;F5GZG1;B7ZB78;F5H823 P61224 152 163 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 1.1019E-05 97.915 By MS/MS By MS/MS By matching 1 1 1 1.3346 1.1924 2.9062 3 Median 1.2612 1.1926 NaN 1 0 Median 1.3346 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4253 1.1924 NaN 1 0 Median 8499600 3868400 4631200 6792700 3168400 3624300 1653300 678870 974400 0 0 0 0 0 0 0 0 0 53639 21139 32500 15782 2551 16451 81766;81767;81768 82863;82864;82865;82866 82864 4 INVQNNVDLGQPVK EETLLGISKKAKQMKINVQNNVDLGQPVKN KINVQNNVDLGQPVKNKRVFKGDQF_____ K I N V K N 0 0 3 1 0 2 0 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 14 0 1536.826 E9PFF8;Q6NW34 E9PFF8 215 228 C3orf17 Uncharacterized protein C3orf17 yes no 2 0.00014654 81.865 By MS/MS 1 0.83375 0.89581 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83375 0.89581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5923100 2988800 2934300 0 0 0 0 0 0 5923100 2988800 2934300 0 0 0 0 0 0 0 0 0 15783 919 16452 81769 82867 82867 1 INVSGLTTK YLVNEKHIYLLPSGRINVSGLTTKNLDYVA LLPSGRINVSGLTTKNLDYVATSIHEAVTK R I N T K N 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 9 0 931.53385 P17174 P17174 388 396 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00050963 101.64 By MS/MS By MS/MS 1 1 1.2007 1.0679 7.9466 2 Median 1.0878 1.0095 NaN 1 0 Median 1.3253 1.1296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21407000 9787300 11619000 11219000 5694700 5524300 10188000 4092600 6095100 0 0 0 0 0 0 0 0 0 0 0 0 15784 2038 16453 81770;81771 82868;82869 82869 2 INVYYNEAAGNK PTGSYHGDSDLQLERINVYYNEAAGNKYVP LERINVYYNEAAGNKYVPRAILVDLEPGTM R I N N K Y 2 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 2 1 0 0 12 0 1354.6517 Q13885 Q13885 47 58 TUBB2A Tubulin beta-2A chain yes yes 2 3.9693E-06 112.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.0197 1.4986 61.288 7 Linear 1.2171 1.1169 NaN 1 0 Median 1.2248 1.035 NaN 1 0 Median 1.0197 0.98971 NaN 1 0 Median 0.48553 0.42601 91.91 2 1 Median NaN NaN NaN 0 0 Median 0.59524 0.60269 61.715 2 0 Median 119620000 56680000 62944000 56717000 25526000 31191000 33903000 15034000 18869000 9548000 4738800 4809200 13812000 8829700 4982100 0 0 0 5643400 2551300 3092100 15785 2844 16454 81772;81773;81774;81775;81776;81777;81778 82870;82871;82872;82873;82874;82875;82876;82877;82878;82879;82880;82881 82871 12 INVYYNEATGGK PTGTYHGDSDLQLERINVYYNEATGGKYVP LERINVYYNEATGGKYVPRAVLVDLEPGTM R I N G K Y 1 0 2 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 1 0 0 12 0 1327.6408 P68371 P68371 47 58 TUBB4B Tubulin beta-4B chain yes yes 2 2.5239E-09 170.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 10 3 7 5 8 1.1808 1.0347 36.385 41 Median 1.1581 1.0625 15.464 8 1 Median 1.1122 0.92339 18.804 10 2 Median 1.2577 1.2401 7.7155 3 0 Median 1.1076 0.99329 25.388 7 2 Median 1.8223 1.8547 42.511 5 2 Median 1.1959 0.96992 25.206 8 2 Median 2208000000 1000400000 1207600000 993180000 447260000 545920000 589880000 271980000 317900000 193830000 87710000 106120000 193780000 93458000 100320000 105820000 37724000 68100000 131520000 62301000 69216000 15786 2634 16455 81779;81780;81781;81782;81783;81784;81785;81786;81787;81788;81789;81790;81791;81792;81793;81794;81795;81796;81797;81798;81799;81800;81801;81802;81803;81804;81805;81806;81807;81808;81809;81810;81811;81812;81813;81814;81815;81816;81817;81818;81819 82882;82883;82884;82885;82886;82887;82888;82889;82890;82891;82892;82893;82894;82895;82896;82897;82898;82899;82900;82901;82902;82903;82904;82905;82906;82907;82908;82909;82910;82911;82912;82913;82914;82915;82916;82917;82918;82919;82920;82921;82922;82923;82924;82925;82926;82927;82928;82929;82930;82931;82932;82933;82934;82935;82936;82937;82938;82939;82940;82941;82942;82943;82944 82920 62 INVYYNEATGGKYVPR PTGTYHGDSDLQLERINVYYNEATGGKYVP NVYYNEATGGKYVPRAVLVDLEPGTMDSVR R I N P R A 1 1 2 0 0 0 1 2 0 1 0 1 0 0 1 0 1 0 3 2 0 0 16 1 1842.9264 P68371 P68371 47 62 TUBB4B Tubulin beta-4B chain yes yes 3 0.0027487 28.58 By MS/MS By matching 1 1 0.86862 0.82903 25.998 2 Median 0.999 0.99634 NaN 1 0 Median 0.75526 0.68981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12270000 6393200 5876900 8865000 4700500 4164500 3405100 1692600 1712400 0 0 0 0 0 0 0 0 0 0 0 0 15787 2634 16456 81820;81821 82945 82945 1 INVYYNEATGGNYVPR PTGTYHGDSDLQLERINVYYNEATGGNYVP NVYYNEATGGNYVPRAVLVDLEPGTMDSVR R I N P R A 1 1 3 0 0 0 1 2 0 1 0 0 0 0 1 0 1 0 3 2 0 0 16 0 1828.8744 P04350;M0QY85;M0R278;M0R0X0;M0QY37;M0QX14;M0QZL7 P04350 47 62 TUBB4A Tubulin beta-4A chain yes no 2 1.3127E-10 163.78 By MS/MS By matching 1 1 0.81058 0.73661 5.3964 2 Median 0.75053 0.70903 NaN 1 0 Median 0.87545 0.76526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23161000 12688000 10472000 22442000 12250000 10192000 718710 438680 280030 0 0 0 0 0 0 0 0 0 0 0 0 15788 1849 16457 81822;81823 82946;82947 82947 2 INVYYNEATGNK PTGSYHGDSDLQLERINVYYNEATGNKYVP LERINVYYNEATGNKYVPRAILVDLEPGTM R I N N K Y 1 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 2 1 0 0 12 0 1384.6623 Q9BVA1 Q9BVA1 47 58 TUBB2B Tubulin beta-2B chain yes yes 2 2.0129E-10 134.68 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.4135 1.232 42.581 6 Median 1.1675 1.0744 44.361 2 0 Median 2.0199 1.6935 32.77 2 1 Median 0.69189 0.66853 NaN 1 1 Median 1.2583 1.1299 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107960000 51696000 56261000 61214000 30961000 30253000 26426000 9697100 16729000 12669000 7355200 5314100 7648400 3683500 3964900 0 0 0 0 0 0 15789 3849 16458 81824;81825;81826;81827;81828;81829 82948;82949;82950;82951;82952;82953;82954;82955 82955 8 INVYYNEATGNKYVPR PTGSYHGDSDLQLERINVYYNEATGNKYVP NVYYNEATGNKYVPRAILVDLEPGTMDSVR R I N P R A 1 1 3 0 0 0 1 1 0 1 0 1 0 0 1 0 1 0 3 2 0 0 16 1 1899.9479 Q9BVA1 Q9BVA1 47 62 TUBB2B Tubulin beta-2B chain yes yes 3 0.0010729 35.757 By MS/MS By matching 2 1 0.91793 0.89702 19.434 3 Plateau 0.7657 0.75679 26.76 2 0 Median 0.7676 0.70087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21189000 10867000 10321000 16535000 8432400 8102100 4654100 2434900 2219100 0 0 0 0 0 0 0 0 0 0 0 0 15790 3849 16459 81830;81831;81832 82956 82956 1 INVYYNESSSQK PAGGYVGDSALQLERINVYYNESSSQKYVP LERINVYYNESSSQKYVPRAALVDLEPGTM R I N Q K Y 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1430.6678 Q9BUF5;K7EL29;K7ESQ3;K7EQT3;K7EJ64;K7ERA8;K7EJZ4;K7EN98;K7EPE5 Q9BUF5 47 58 TUBB6 Tubulin beta-6 chain yes no 2 7.8881E-05 132.78 By MS/MS By MS/MS By MS/MS 1 1 1 1.0167 0.96676 4.832 3 Median 0.99118 0.91732 NaN 1 0 Median 1.1407 0.96676 NaN 1 0 Median 1.0167 1.0103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28825000 13640000 15185000 14313000 6738700 7574400 11734000 5318200 6415800 2777900 1582900 1195100 0 0 0 0 0 0 0 0 0 15791 3838 16460 81833;81834;81835 82957;82958;82959;82960;82961 82958 5 INWAMEDK NKHIMIDLGTGNNNKINWAMEDKQEMVDII GTGNNNKINWAMEDKQEMVDIIETVYRGAR K I N D K Q 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 8 0 1005.459 P83876;K7ESL1 P83876 102 109 TXNL4A Thioredoxin-like protein 4A yes no 2 0.025516 42.599 By MS/MS 1 0.90768 0.91034 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90768 0.91034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1570100 831850 738250 0 0 0 0 0 0 1570100 831850 738250 0 0 0 0 0 0 0 0 0 15792 2662 16461 81836 82962;82963 82962 2 INYEESMMVR RHPHVTRQSQEDQHRINYEESMMVRLSVSK EDQHRINYEESMMVRLSVSKREKGRRKRAN R I N V R L 0 1 1 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 1 1 0 0 10 0 1270.5686 Q8NEJ9;H0YJ17 Q8NEJ9 239 248 NGDN Neuroguidin yes no 2 0.00037009 81.594 By MS/MS 1 1.2689 1.2854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2689 1.2854 NaN 1 0 Median NaN NaN NaN 0 0 Median 10677000 4314300 6363000 0 0 0 0 0 0 0 0 0 0 0 0 10677000 4314300 6363000 0 0 0 15793 3430 16462 81837 82964;82965 82965 2 INYTEGR RGVEAARERMFNGEKINYTEGRAVLHVALR ERMFNGEKINYTEGRAVLHVALRNRSNTPI K I N G R A 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 7 0 851.41373 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ELR7;A0A2R8YF08;K7ERK8 P06744 90 96 GPI Glucose-6-phosphate isomerase yes no 2 0.01522 72.138 By MS/MS By MS/MS By matching 2 2 1 1.0755 0.9583 13.197 5 Median 1.0735 1.0467 12.482 2 0 Median 1.2075 1.0305 18.346 2 0 Median 0.86651 0.88605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21987000 9874900 12112000 5407800 2502500 2905400 16173000 7155400 9017100 406610 216970 189630 0 0 0 0 0 0 0 0 0 15794 1875 16463 81838;81839;81840;81841;81842 82966;82967;82968;82969 82968 4 IPAASAAAMNLASAR LMSLRTAPAANLASRIPAASAAAMNLASAR IPAASAAAMNLASARTPAIPTAVNLADSRT R I P A R T 7 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1413.7398 Q9UQ35 Q9UQ35 2232 2246 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 2.4259E-14 128.85 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 4 1.0131 0.96171 21.705 10 Median 0.99851 0.96002 16.131 3 0 Median 0.98837 0.83929 19.506 2 0 Median 1.0678 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0745 1.1045 29.735 4 1 Linear NaN NaN NaN 0 0 Median 199440000 99305000 100130000 150610000 75108000 75498000 5505700 2599600 2906100 7350800 3843300 3507400 0 0 0 35975000 17755000 18220000 0 0 0 15795 4359 16464;16465 81843;81844;81845;81846;81847;81848;81849;81850;81851;81852 82970;82971;82972;82973;82974;82975;82976;82977;82978;82979;82980 82976 1932 11 IPADTFAALK LHAAVIAINEAIDRRIPADTFAALKNPNAM AIDRRIPADTFAALKNPNAMLVNLEEPLAS R I P L K N 3 0 0 1 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 10 0 1045.5808 P46940;A0A0J9YXZ5 P46940 232 241 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0011713 67.897 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 0.99018 0.9367 7.2352 6 Median 0.98301 0.95019 NaN 1 0 Median 0.99018 0.87454 1.0536 2 0 Median 0.84248 0.93492 NaN 1 0 Median 1.0435 0.93847 NaN 1 0 Median 1.0236 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 22672000 11171000 11501000 8381300 4346800 4034500 11715000 5670500 6044400 1567700 672320 895410 212100 95541 116560 795560 385860 409700 0 0 0 15796 2350 16466 81853;81854;81855;81856;81857;81858 82981;82982;82983 82982 3 IPAEANPLADHVSATR ILNSIFPGIGCPVPRIPAEANPLADHVSAT PAEANPLADHVSATRILCGALVFPTIATIV R I P T R I 4 1 1 1 0 0 1 0 1 1 1 0 0 0 2 1 1 0 0 1 0 0 16 0 1660.8533 Q9NX47 Q9NX47 193 208 MARCH5 E3 ubiquitin-protein ligase MARCH5 yes yes 3 3.1921E-08 88.133 By MS/MS By MS/MS 3 1 0.77322 0.74502 33.34 4 Median 0.97391 0.92447 26.349 3 1 Median 0.61051 0.48847 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54129000 29120000 25009000 31408000 16841000 14567000 22721000 12279000 10443000 0 0 0 0 0 0 0 0 0 0 0 0 15797 4158 16467 81859;81860;81861;81862 82984;82985;82986 82986 3 IPAFLNVVDIAGLVK ERFDFLCQYHKPASKIPAFLNVVDIAGLVK IPAFLNVVDIAGLVKGAHNGQGLGNAFLSH K I P V K G 2 0 1 1 0 0 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 15 0 1567.9338 J3KQ32;Q9NTK5;C9JTK6 J3KQ32 104 118 OLA1 Obg-like ATPase 1 yes no 2 3.167E-06 90.653 By matching By MS/MS By MS/MS 1 1 1 0.97357 0.94957 13.239 3 Median 1.1474 1.0685 NaN 1 0 Median 0.96438 0.82033 NaN 1 0 Median 0.97357 0.94957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178350000 88494000 89855000 77667 38287 39381 170820000 84828000 85990000 7453000 3627500 3825600 0 0 0 0 0 0 0 0 0 15798 1315 16468 81863;81864;81865 82987;82988;82989;82990 82990 4 IPAHQVLYSTSGENASGK IIWMIRGEKRLAYARIPAHQVLYSTSGENA HQVLYSTSGENASGKYCGKTQTIFLKYPQE R I P G K Y 2 0 1 0 0 1 1 2 1 1 1 1 0 0 1 3 1 0 1 1 0 0 18 0 1857.9221 Q9NZM1;H0YD14 Q9NZM1 791 808 MYOF Myoferlin yes no 3 1.7422E-05 49.036 By MS/MS By MS/MS 2 1 0.81541 0.79458 30.604 3 Median 0.94581 0.91555 20.04 2 1 Median 0.64526 0.57231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16156000 8170100 7985400 11480000 5531600 5948700 4675200 2638500 2036700 0 0 0 0 0 0 0 0 0 0 0 0 15799 4192 16469 81866;81867;81868 82991;82992;82993 82992 3 IPAIFSPAFYTSR ISDFARKRQEAVAGRIPAIFSPAFYTSRYG GRIPAIFSPAFYTSRYGYKMCLRIYLNGDG R I P S R Y 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 2 1 0 1 0 0 0 13 0 1468.7715 Q12933 Q12933 373 385 TRAF2 TNF receptor-associated factor 2 yes yes 2 0.0024138 47.938 By MS/MS 1 0.81512 0.81293 NaN 1 Median 0.81512 0.81293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2187400 1163100 1024200 2187400 1163100 1024200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15800 2772 16470 81869 82994;82995 82995 2 IPALDLLIK TCTSVYTKDRAAKCKIPALDLLIKLLQTFR RAAKCKIPALDLLIKLLQTFRSSRLMDEFK K I P I K L 1 0 0 1 0 0 0 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 994.64267 P78527;F5GX40 P78527 125 133 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.00055831 114.5 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 3 2 2 2 0.88839 0.91569 15.176 13 Median 0.81895 0.79817 7.3208 2 0 Median 1.0418 0.93295 21.796 2 0 Median 0.78861 0.82849 6.7611 3 0 Median 1.2444 1.1494 3.0253 2 0 Median 0.88914 0.92201 0.97262 2 0 Median 1.2303 1.0519 0.26548 2 0 Median 42859000 20971000 21888000 6160400 3387700 2772600 20739000 9142200 11597000 11247000 6213900 5032600 1820200 793150 1027100 1420200 758730 661460 1471900 675030 796840 15801 2647 16471 81870;81871;81872;81873;81874;81875;81876;81877;81878;81879;81880;81881;81882 82996;82997;82998;82999 82998 4 IPAMTIAK EDQKIGIEIIKRTLKIPAMTIAKNAGVEGS IIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ K I P A K N 2 0 0 0 0 0 0 0 0 2 0 1 1 0 1 0 1 0 0 0 0 0 8 0 843.48881 P10809 P10809 474 481 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0034523 95.352 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 1 2 1.2248 1.0706 19.112 12 Median 1.0666 1.0035 13.257 2 0 Median 1.2902 1.0662 0.52013 3 0 Plateau 0.85201 0.8706 7.8466 2 0 Median 1.2365 1.094 0.72689 2 0 Median 1.8165 1.7382 NaN 1 0 Median 1.4513 1.1914 16.881 2 0 Median 359640000 165210000 194430000 141570000 70037000 71534000 175400000 74026000 101370000 30313000 16124000 14188000 4736600 2014400 2722200 2344100 954240 1389900 5270900 2053800 3217000 15802 1947 16472 81883;81884;81885;81886;81887;81888;81889;81890;81891;81892;81893;81894 83000;83001;83002;83003;83004;83005;83006;83007;83008;83009;83010 83001 11 IPANQLAELWLK LQTNIEALKSGIQGKIPANQLAELWLKLID QGKIPANQLAELWLKLIDEVIEDTRYTLPL K I P L K L 2 0 1 0 0 1 1 0 0 1 3 1 0 0 1 0 0 1 0 0 0 0 12 0 1394.7922 Q9NZM1;H0YD14 Q9NZM1 682 693 MYOF Myoferlin yes no 2 0.032347 27.329 By MS/MS By matching 1 1 1.2032 1.0974 59.498 2 Median 1.764 1.6714 NaN 1 0 Median 0.82067 0.72054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3880100 1781300 2098800 2407100 974290 1432800 1473000 807010 665960 0 0 0 0 0 0 0 0 0 0 0 0 15803 4192 16473 81895;81896 83011 83011 1 IPASQTSVPFDHLGK NVSSSDLTGRQEVSRIPASQTSVPFDHLGK IPASQTSVPFDHLGK_______________ R I P G K - 1 0 0 1 0 1 0 1 1 1 1 1 0 1 2 2 1 0 0 1 0 0 15 0 1595.8308 P49674;H0Y5S9;H0Y682 P49674 402 416 CSNK1E Casein kinase I isoform epsilon yes no 3 0.012025 23.779 By MS/MS By matching By matching By matching 1 1 1 1 1.3059 1.2194 44.646 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1427 1.1105 NaN 1 0 Median 1.4925 1.3389 NaN 1 0 Median 0.76113 0.72926 NaN 1 0 Median 2.5227 2.1409 NaN 1 0 Median 18171000 8774200 9397100 0 0 0 0 0 0 8812400 4250900 4561600 6425300 2915600 3509700 2031800 1147000 884860 901720 460830 440890 15804 2390 16474 81897;81898;81899;81900 83012 83012 1 IPAVTYPK KRNNLTILQRYMSSKIPAVTYPKNESTPPS QRYMSSKIPAVTYPKNESTPPSEELELDKW K I P P K N 1 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 1 0 1 1 0 0 8 0 887.51165 Q7L0Y3;C9JVB6 Q7L0Y3 44 51 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.041444 36.57 By MS/MS By MS/MS 1 1 1.2695 1.2958 36.971 2 Median 1.0692 0.99771 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5073 1.683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6066900 2314600 3752300 4448300 1706300 2741900 0 0 0 1618600 608220 1010400 0 0 0 0 0 0 0 0 0 15805 3218 16475 81901;81902 83013;83014 83013 2 IPAVVVEK VYKYIVQKLYGFPYKIPAVVVEKDAVFIPA LYGFPYKIPAVVVEKDAVFIPAGWDNDKKI K I P E K D 1 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 3 0 0 8 0 853.5273 Q9Y6G9;E9PHI6 Q9Y6G9 311 318 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 0.052022 34.312 By MS/MS 1 0.8881 0.75231 NaN 1 Median NaN NaN NaN 0 0 Median 0.8881 0.75231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5467000 2770700 2696300 0 0 0 5467000 2770700 2696300 0 0 0 0 0 0 0 0 0 0 0 0 15806 4491 16476 81903 83015 83015 1 IPAYFVTVSDPAVPPGEDPDGR IREWCISRQLWWGHRIPAYFVTVSDPAVPP VSDPAVPPGEDPDGRYWVSGRNEAEAREKA R I P G R Y 2 1 0 3 0 0 1 2 0 1 0 0 0 1 5 1 1 0 1 3 0 0 22 0 2298.1168 P26640;A0A140T936;H0Y426 P26640 731 752 VARS Valine--tRNA ligase yes no 2 0.041805 18.833 By MS/MS 1 0.56703 0.61389 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56703 0.61389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1261300 763220 498110 0 0 0 0 0 0 1261300 763220 498110 0 0 0 0 0 0 0 0 0 15807 2148 16477 81904 83016 83016 1 IPCESPPLEVVDTTASTKR SGHTQESLTAGKATKIPCESPPLEVVDTTA SPPLEVVDTTASTKRHLRTRVQKVQVKEEP K I P K R H 1 1 0 1 1 0 2 0 0 1 1 1 0 0 3 2 3 0 0 2 0 0 19 1 2099.0569 P46013 P46013 2704 2722 MKI67 Antigen KI-67 yes yes 3 1.19E-18 111.77 By MS/MS 1 0.7436 0.862 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7436 0.862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9988100 5559500 4428600 0 0 0 0 0 0 9988100 5559500 4428600 0 0 0 0 0 0 0 0 0 15808 2335 16478 81905 83017;83018 83017 2 IPDEELR GRRLDFDYKKKRQGKIPDEELRQALEKFEE YKKKRQGKIPDEELRQALEKFEESKEVAET K I P L R Q 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 870.4447 Q99961 Q99961 178 184 SH3GL1 Endophilin-A2 no no 2 0.034356 47.849 By MS/MS 1 0.96129 0.82678 NaN 1 Median NaN NaN NaN 0 0 Median 0.96129 0.82678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2377500 1408100 969350 0 0 0 2377500 1408100 969350 0 0 0 0 0 0 0 0 0 0 0 0 15809 3774 16479 81906 83019 83019 1 IPDEIIDMVK MPECYIRGSTIKYLRIPDEIIDMVKEEVVA IKYLRIPDEIIDMVKEEVVAKGRGRGGLQQ R I P V K E 0 0 0 2 0 0 1 0 0 3 0 1 1 0 1 0 0 0 0 1 0 0 10 0 1171.6159 V9GZ56;Q9Y4Z0;U3KQK1 V9GZ56 71 80 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 2 0.0011606 70.908 By MS/MS By matching By MS/MS By matching 1 1 4 1 0.85663 0.88321 12.439 7 Median 0.93468 0.88321 NaN 1 0 Median 1.1064 0.96549 NaN 1 0 Median 0.77364 0.73856 11.831 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1048 0.90496 NaN 1 0 Median 58624000 30816000 27807000 8778500 4276800 4501700 718100 340940 377160 48356000 25778000 22578000 0 0 0 0 0 0 771300 420600 350700 15810 4451 16480;16481 81907;81908;81909;81910;81911;81912;81913 83020;83021;83022;83023;83024;83025;83026;83027 83024 1990 8 IPDEIIDMVKEEVVAK MPECYIRGSTIKYLRIPDEIIDMVKEEVVA PDEIIDMVKEEVVAKGRGRGGLQQQKQQKG R I P A K G 1 0 0 2 0 0 3 0 0 3 0 2 1 0 1 0 0 0 0 3 0 0 16 1 1826.97 V9GZ56;Q9Y4Z0;U3KQK1 V9GZ56 71 86 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 2 0.00076531 69.721 By MS/MS 1 0.76731 0.77699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76731 0.77699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10219000 5901300 4318000 0 0 0 0 0 0 10219000 5901300 4318000 0 0 0 0 0 0 0 0 0 15811 4451 16482 81914 83028;83029;83030 83029 1990 3 IPDEINDR DLNEKARALKQILSKIPDEINDRVRFLQTI LKQILSKIPDEINDRVRFLQTIKDIASAIK K I P D R V 0 1 1 2 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 8 0 970.47197 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J363 Q9BUL8 117 124 PDCD10 Programmed cell death protein 10 yes no 2 0.015598 50.04 By matching By MS/MS By matching 1 1 1 1.184 0.95952 49.82 3 Median 1.8991 2.0056 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81348 0.77634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.184 0.95952 NaN 1 0 Median 9307500 4075600 5231900 4917500 1741600 3175900 0 0 0 3695800 1999200 1696600 0 0 0 0 0 0 694250 334870 359380 15812 3841 16483 81915;81916;81917 83031 83031 1 IPDEINDRVR DLNEKARALKQILSKIPDEINDRVRFLQTI QILSKIPDEINDRVRFLQTIKDIASAIKEL K I P V R F 0 2 1 2 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 10 1 1225.6415 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J363 Q9BUL8 117 126 PDCD10 Programmed cell death protein 10 yes no 3 0.0034379 43.512 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.83328 0.82358 9.3985 4 Median 0.82722 0.88425 NaN 1 0 Median 0.83938 0.71286 NaN 1 0 Median 0.76991 0.79827 NaN 1 0 Median 0.94892 0.84968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9209700 5123000 4086700 3994100 2425500 1568600 1918100 892400 1025700 1817300 1013900 803480 1480100 791280 688870 0 0 0 0 0 0 15813 3841 16484 81918;81919;81920;81921 83032;83033;83034;83035 83033 4 IPDPDSDDVSEVDAR QAAQPPTLPVEEKKKIPDPDSDDVSEVDAR IPDPDSDDVSEVDARHIIENAKQDVDDEYG K I P A R H 1 1 0 5 0 0 1 0 0 1 0 0 0 0 2 2 0 0 0 2 0 0 15 0 1628.7166 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y7R0;A0A2R8Y583 P51532 690 704 SMARCA4 Transcription activator BRG1 yes no 2 0.00018344 75.479 By MS/MS By matching 1 1 0.62279 0.61387 5.947 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57854 0.64024 NaN 1 0 Median 0.67043 0.58859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5261200 3207500 2053700 0 0 0 0 0 0 3799600 2388000 1411600 1461600 819430 642120 0 0 0 0 0 0 15814 366 16485 81922;81923 83036 83036 1 IPDPEAVKPDDWDEDAPAK DPEDRKPEDWDERPKIPDPEAVKPDDWDED EAVKPDDWDEDAPAKIPDEEATKPEGWLDD K I P A K I 3 0 0 5 0 0 2 0 0 1 0 2 0 0 4 0 0 1 0 1 0 0 19 1 2106.9746 P27824;D6RGY2 P27824 293 311 CANX Calnexin yes no 2;3 5.5814E-05 50.883 By MS/MS By MS/MS By matching 3 3 1 0.63382 0.6067 47.436 7 Median 0.48994 0.50166 75.505 3 1 Median 0.64508 0.6067 2.8682 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8875 1.0008 NaN 1 0 Median NaN NaN NaN 0 0 Median 68821000 41464000 27356000 39082000 25122000 13960000 23712000 14073000 9639300 0 0 0 0 0 0 6027000 2269600 3757400 0 0 0 15815 2158 16486 81924;81925;81926;81927;81928;81929;81930 83037;83038;83039;83040 83039 4 IPDQLVILDMK YDMFEVCFESKGTGRIPDQLVILDMKHGVE GTGRIPDQLVILDMKHGVEAKNYEEIAKVE R I P M K H 0 0 0 2 0 1 0 0 0 2 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1283.7159 P49755;G3V2K7 P49755 117 127 TMED10 Transmembrane emp24 domain-containing protein 10 yes no 2 0.0012806 59.908 By MS/MS By matching 2 1 0.99852 0.93845 12.713 3 Median 0.9034 0.87225 10.345 2 0 Median 1.2171 1.0444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46004000 22290000 23714000 40845000 19981000 20864000 5159000 2308800 2850200 0 0 0 0 0 0 0 0 0 0 0 0 15816 2396 16487 81931;81932;81933 83041;83042;83043 83041 3 IPDSEMLMDEGTSDEK SSKPPEVDAPDKTPRIPDSEMLMDEGTSDE PDSEMLMDEGTSDEKGHMEEKLSLLPRKKA R I P E K G 0 0 0 3 0 0 3 1 0 1 1 1 2 0 1 2 1 0 0 0 0 0 16 0 1795.7492 D6RB01;Q9Y6X4 D6RB01 432 447 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 0.00013515 62.89 By MS/MS 1 0.85916 0.94329 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85916 0.94329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3327800 1883200 1444600 0 0 0 0 0 0 3327800 1883200 1444600 0 0 0 0 0 0 0 0 0 15817 814 16488 81934 83044;83045 83045 2 IPDTVLEK ELFSKFYGELALKKKIPDTVLEKVYELLGL ELALKKKIPDTVLEKVYELLGLLGEVHPSE K I P E K V 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 8 0 913.51205 P78527 P78527 166 173 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0034746 93.992 By MS/MS By MS/MS By MS/MS 1 2 1 0.88969 0.91591 21.765 4 Median NaN NaN NaN 0 0 Median 1.2337 1.1001 NaN 1 0 Median 0.69248 0.75531 1.3527 2 0 Median 1.1081 1.1017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58233000 30436000 27796000 0 0 0 25325000 12238000 13087000 22399000 13245000 9154600 10509000 4953300 5555300 0 0 0 0 0 0 15818 2647 16489 81935;81936;81937;81938 83046;83047;83048;83049;83050 83048 5 IPDVAALSMGFSVK SVVFRNGNWPIPGERIPDVAALSMGFSVKE RIPDVAALSMGFSVKEDLSWPGLAVGNLFH R I P V K E 2 0 0 1 0 0 0 1 0 1 1 1 1 1 1 2 0 0 0 2 0 0 14 0 1433.7588 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GWJ8;H7C3E1;B7Z1I9;A0A1B0GV60;A0A1B0GW13;A0A1B0GV24 O75787 42 55 ATP6AP2 Renin receptor yes no 2 0.012745 32.329 By MS/MS 2 1.0534 0.90653 8.844 2 Median NaN NaN NaN 0 0 Median 1.0534 0.90653 8.844 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3271000 1560500 1710500 0 0 0 3271000 1560500 1710500 0 0 0 0 0 0 0 0 0 0 0 0 15819 316 16490 81939;81940 83051 83051 1 IPDVDHAIVVLQK I P Q K 1 0 0 2 0 1 0 0 1 2 1 1 0 0 1 0 0 0 0 3 0 0 13 0 1445.8242 REV__Q5T8U3 yes yes 2 0.0021765 48.794 By MS/MS By MS/MS By matching By matching By matching 2 4 1 1 2 1.2774 1.1162 18.043 10 Median 0.97908 0.94528 5.9955 2 0 Median 1.2774 1.101 1.2962 4 0 Median 1.0871 1.1885 NaN 1 0 Median 1.4072 1.2385 NaN 1 0 Median 1.568 1.5711 9.0185 2 0 Median NaN NaN NaN 0 0 Median 32200000 14306000 17894000 7514500 3799500 3715000 18003000 7759300 10243000 2931700 1419900 1511700 113390 56786 56602 3637800 1270500 2367300 0 0 0 + 15820 4544 16491 81941;81942;81943;81944;81945;81946;81947;81948;81949;81950 83052;83053;83054;83055 83055 4 IPDWFLNR VERVITIMQNPRQYKIPDWFLNRQKDVKDG QNPRQYKIPDWFLNRQKDVKDGKYSQVLAN K I P N R Q 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 8 0 1059.5502 P62269;J3JS69 P62269 79 86 RPS18 40S ribosomal protein S18 yes no 2 6.5083E-06 164.89 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 1 4 1 1.0584 0.9774 11.416 12 Median 0.95604 0.90298 5.2269 2 0 Median 1.1221 0.9387 11.997 2 0 Median 0.99143 0.9766 1.9457 2 0 Median 1.2246 1.0141 NaN 1 0 Median 1.0848 1.109 16.852 4 0 Median 1.1903 0.96483 NaN 1 0 Median 564020000 284010000 280010000 393330000 201690000 191640000 89447000 42776000 46671000 53680000 26598000 27082000 2284300 1006800 1277500 24720000 11658000 13061000 561890 282800 279080 15821 2578 16492 81951;81952;81953;81954;81955;81956;81957;81958;81959;81960;81961;81962 83056;83057;83058;83059;83060;83061;83062;83063;83064;83065;83066;83067;83068;83069;83070;83071;83072 83072 17 IPEDQHALLVK PGRCVPQIIAFLNSKIPEDQHALLVKYQGL LNSKIPEDQHALLVKYQGLVVKQLVSQSKK K I P V K Y 1 0 0 1 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1261.703 O94874 O94874 720 730 UFL1 E3 UFM1-protein ligase 1 yes yes 3 0.059016 13.4 By MS/MS 1 0.69416 0.68236 NaN 1 Median 0.69416 0.68236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2177400 1120300 1057100 2177400 1120300 1057100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15822 1732 16493 81963 83073 83073 1 IPEFIAFR SEYIIQAYKYGAFEKIPEFIAFRNRLNNSL KYGAFEKIPEFIAFRNRLNNSLHFAQVRTE K I P F R N 1 1 0 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 8 0 991.5491 Q14CX7 Q14CX7 593 600 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.0084743 62.717 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1.0042 0.9233 14.885 6 Median 0.96146 0.9561 NaN 1 0 Median 0.98258 0.86965 NaN 1 0 Median 1.0539 1.1266 0.10866 2 0 Median 1.0263 0.89163 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91745 0.77628 NaN 1 0 Median 5623900 2560800 3063100 1713900 780490 933430 593540 281540 312000 2886900 1307200 1579700 353270 156580 196690 0 0 0 76312 34973 41340 15823 2908 16494 81964;81965;81966;81967;81968;81969 83074;83075;83076;83077 83077 4 IPEFNWSQMHQR AVNGQRRDSRSTVFRIPEFNWSQMHQRLLT VFRIPEFNWSQMHQRLLTDLLFSIETDIQM R I P Q R L 0 1 1 0 0 2 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 12 0 1571.7303 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;A0A494C0R9 E9PEM5 1306 1317 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2;3 0.00010849 79.82 By MS/MS By matching 2 1 0.75104 0.84291 12.188 3 Median 0.82572 0.81139 16.953 2 1 Median NaN NaN NaN 0 0 Median 0.75104 0.84291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25340000 13364000 11975000 23827000 12623000 11204000 0 0 0 1512600 741330 771250 0 0 0 0 0 0 0 0 0 15824 470 16495 81970;81971;81972 83078;83079;83080 83078 3 IPEFSSFVVR WGSLYRSLLQSSQRRIPEFSSFVVRTNTCG SSQRRIPEFSSFVVRTNTCGELRSSHLGQE R I P V R T 0 1 0 0 0 0 1 0 0 1 0 0 0 2 1 2 0 0 0 2 0 0 10 0 1179.6288 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54;A0A3B3IT89 Q6PI48 41 50 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.042746 30.254 By MS/MS 1 0.90105 0.9212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90105 0.9212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7994400 4181300 3813000 0 0 0 0 0 0 7994400 4181300 3813000 0 0 0 0 0 0 0 0 0 15825 3171 16496 81973 83081 83081 1 IPEGLFDPSNVK FPNGYNCDFGAERLKIPEGLFDPSNVKGLS RLKIPEGLFDPSNVKGLSGNTMLGVSHVVT K I P V K G 0 0 1 1 0 0 1 1 0 1 1 1 0 1 2 1 0 0 0 1 0 0 12 0 1314.682 O96019;O94805 O96019 304 315 ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 6.0603E-06 117.52 By MS/MS By matching 1 1 0.81048 0.75053 17.733 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68836 0.66208 NaN 1 0 Median 0.95426 0.85079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21988000 12246000 9741800 0 0 0 0 0 0 20310000 11393000 8917100 1677200 852400 824760 0 0 0 0 0 0 15826 1809 16497 81974;81975 83082;83083;83084;83085 83082 4 IPEINSSDMSAHVTSPSGR PSVATVGSICDLNLKIPEINSSDMSAHVTS NSSDMSAHVTSPSGRVTEAEIVPMGKNSHC K I P G R V 1 1 1 1 0 0 1 1 1 2 0 0 1 0 2 5 1 0 0 1 0 0 19 0 1983.932 O75369;E7EN95 O75369 2121 2139 FLNB Filamin-B yes no 2;3 1.4163E-18 153.09 By MS/MS By MS/MS By matching By MS/MS 2 4 1 2 0.77041 0.7139 21.556 9 Median 0.6856 0.6773 7.4431 2 0 Median 0.81706 0.67505 20.531 4 0 Median 0.69649 0.76503 NaN 1 0 Median 1.0678 0.93553 15.687 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125420000 67565000 57853000 24739000 13384000 11355000 92014000 49356000 42658000 6375700 3643200 2732400 2290000 1182300 1107700 0 0 0 0 0 0 15827 1664 16498;16499 81976;81977;81978;81979;81980;81981;81982;81983;81984 83086;83087;83088;83089;83090;83091;83092;83093;83094;83095 83088 530 10 IPEIQATMR QKSTEVMKAMQSLVKIPEIQATMRELSKEM MQSLVKIPEIQATMRELSKEMMKAGIIEEM K I P M R E 1 1 0 0 0 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 9 0 1057.559 Q9Y3E7 Q9Y3E7 120 128 CHMP3 Charged multivesicular body protein 3 yes yes 2 0.0005606 114.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1 0.83564 0.7485 7.2634 7 Median 0.79962 0.7485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81838 0.80418 NaN 1 0 Median 0.92705 0.77324 8.884 3 0 Median 0.71962 0.72405 NaN 1 0 Median 0.84097 0.68172 NaN 1 0 Median 48724000 26067000 22657000 16638000 8922800 7715400 0 0 0 7592000 3823100 3768900 8726600 4558500 4168200 13454000 7494500 5959400 2313200 1268400 1044800 15828 4428 16500;16501 81985;81986;81987;81988;81989;81990;81991;81992 83096;83097;83098;83099;83100;83101;83102;83103;83104;83105;83106 83099 1976 11 IPEISIQDMTAQVTSPSGK PSVANVGSHCDLSLKIPEISIQDMTAQVTS SIQDMTAQVTSPSGKTHEAEIVEGENHTYC K I P G K T 1 0 0 1 0 2 1 1 0 3 0 1 1 0 2 3 2 0 0 1 0 0 19 0 2001.0089 P21333;Q60FE5 P21333 2166 2184 FLNA Filamin-A no no 2;3 1.3721E-17 134.24 By MS/MS By MS/MS By matching 3 4 1 0.75356 0.7172 14.266 8 Median 0.78171 0.77683 6.6978 3 0 Median 0.76027 0.66575 15.512 4 0 Median NaN NaN NaN 0 0 Median 0.63446 0.57085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23061000 12824000 10237000 10372000 5485200 4887300 12496000 7222800 5273300 0 0 0 192180 115750 76433 0 0 0 0 0 0 15829 2088;3120 16502 81993;81994;81995;81996;81997;81998;81999;82000 83107;83108;83109;83110 83110 4 IPELAINPLGDR DKGENGTLSREDFQRIPELAINPLGDRIIN FQRIPELAINPLGDRIINAFFPEGEDQVNF R I P D R I 1 1 1 1 0 0 1 1 0 2 2 0 0 0 2 0 0 0 0 0 0 0 12 0 1306.7245 Q99653;H0YKE7;F5GX29;H0YNG9;H0YLY7 Q99653 54 65 CHP1 Calcineurin B homologous protein 1 yes no 2 0.00055672 75.294 By MS/MS By MS/MS 1 1 0.84825 0.75956 9.8239 2 Median 0.74721 0.70859 NaN 1 1 Median 0.96295 0.8142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16687000 8908500 7778200 11647000 6404600 5242200 5039900 2503900 2536000 0 0 0 0 0 0 0 0 0 0 0 0 15830 3760 16503 82001;82002 83111;83112 83112 2 IPELLSLRPR PLPLEVVRGLLPPLRIPELLSLRPRPRPPR LPPLRIPELLSLRPRPRPPRPEPPPGLMAL R I P P R P 0 2 0 0 0 0 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 10 1 1192.7292 K7EQ03;K7EP90;Q9BTD8;K7ER08 K7EQ03 260 269 RBM42 RNA-binding protein 42 yes no 3 0.00024325 110.14 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4638600 0 4638600 0 0 0 0 0 0 4638600 0 4638600 0 0 0 0 0 0 0 0 0 15831 1391 16504 82003 83113 83113 1 IPENIYR HLRQYFHQLEKMNVKIPENIYRGIRNLLES QLEKMNVKIPENIYRGIRNLLESYHVPELI K I P Y R G 0 1 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 7 0 903.48142 P42704 P42704 618 624 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0054115 97.071 By MS/MS By MS/MS 1 1 1.0915 0.97293 12.063 2 Median 0.92616 0.89338 NaN 1 0 Median 1.2863 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56618000 23584000 33034000 8399800 3745400 4654400 48218000 19838000 28380000 0 0 0 0 0 0 0 0 0 0 0 0 15832 2315 16505 82004;82005 83114;83115;83116;83117 83115 4 IPEPESPAKPNVPTASTAPPADSR TKPPPCLENSSPPSRIPEPESPAKPNVPTA PNVPTASTAPPADSRDRRRSYQMPVRDEES R I P S R D 4 1 1 1 0 0 2 0 0 1 0 1 0 0 7 3 2 0 0 1 0 0 24 1 2428.2234 Q9BZL4;K7EL81;K7ER83 Q9BZL4 504 527 PPP1R12C Protein phosphatase 1 regulatory subunit 12C yes no 3 1.0613E-06 58.373 By MS/MS By MS/MS 1 1 0.31714 0.32914 23.595 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34246 0.38889 NaN 1 1 Median 0.2937 0.27856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6130500 4678500 1451900 0 0 0 0 0 0 4240100 3339800 900270 1890300 1338700 551660 0 0 0 0 0 0 15833 1374 16506 82006;82007 83118;83119 83118 2 IPEQILGK MDGGSLDQVLKKAGRIPEQILGKVSIAVIK VLKKAGRIPEQILGKVSIAVIKGLTYLREK R I P G K V 0 0 0 0 0 1 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 8 0 896.53312 Q02750 Q02750 161 168 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 2 0.0054215 85.212 By MS/MS By MS/MS By MS/MS 1 2 1 0.89363 0.76156 16.21 3 Median 0.75717 0.70744 NaN 1 0 Median 0.89363 0.76156 NaN 1 1 Median 0.9029 0.9648 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23321000 12069000 11252000 6402300 3475900 2926300 12865000 6465000 6400300 4053600 2128500 1925200 0 0 0 0 0 0 0 0 0 15834 2700 16507 82008;82009;82010;82011 83120;83121;83122;83123;83124 83123 5 IPEQTYITLK KDLGSLNGTFVNDVRIPEQTYITLKLEDKL VNDVRIPEQTYITLKLEDKLRFGYDTNLFT R I P L K L 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 2 0 1 0 0 0 10 0 1204.6703 Q5SW79;E5RIH6;E5RJT5;E5RFU8 Q5SW79 73 82 CEP170 Centrosomal protein of 170 kDa yes no 2 0.0087295 46.129 By MS/MS By MS/MS 1 2 1.2804 1.0716 28.611 3 Median 0.78815 0.72877 NaN 1 0 Median 1.346 1.1687 12.264 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4836800 2440300 2396500 2479100 1424700 1054400 2357700 1015600 1342100 0 0 0 0 0 0 0 0 0 0 0 0 15835 3076 16508 82012;82013;82014 83125;83126 83125 2 IPETYPFNPPK PDTPYEGGRYQLEIKIPETYPFNPPKVRFI LEIKIPETYPFNPPKVRFITKIWHPNISSV K I P P K V 0 0 1 0 0 0 1 0 0 1 0 1 0 1 4 0 1 0 1 0 0 0 11 0 1301.6656 P61086;D6RDM7 P61086 62 72 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 2 0.0049918 67.897 By MS/MS 1 0.63037 0.58348 NaN 1 Median 0.63037 0.58348 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27229000 17849000 9380700 27229000 17849000 9380700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15836 2543 16509 82015 83127 83127 1 IPFASLASR KSGSLAVDNADPILKIPFASLASRLTLAEL ADPILKIPFASLASRLTLAELNQILYRCES K I P S R L 2 1 0 0 0 0 0 0 0 1 1 0 0 1 1 2 0 0 0 0 0 0 9 0 960.53927 P35573 P35573 890 898 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.0021965 73.665 By MS/MS By matching 2 1 1.2871 1.0889 22.603 3 Median 1.1261 1.0751 31.948 2 0 Median 1.2871 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9872300 4665200 5207200 7178400 3546400 3632000 2694000 1118800 1575200 0 0 0 0 0 0 0 0 0 0 0 0 15837 2243 16510 82016;82017;82018 83128 83128 1 IPGEETDTIQHMR PLCSAQWERMFNTSRIPGEETDTIQHMRDS SRIPGEETDTIQHMRDSKHIVVYHRGRYFK R I P M R D 0 1 0 1 0 1 2 1 1 2 0 0 1 0 1 0 2 0 0 0 0 0 13 0 1525.7195 P50416 P50416 317 329 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes yes 3 0.0007339 59.871 By MS/MS By MS/MS By matching 1 2 1 0.74527 0.71103 17.343 4 Median 0.56131 0.56791 NaN 1 1 Median 0.82199 0.72193 17.253 2 0 Median 0.74099 0.79116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7046300 4349300 2697000 2998000 2097200 900830 1785900 974700 811180 2262400 1277400 984980 0 0 0 0 0 0 0 0 0 15838 2413 16511 82019;82020;82021;82022 83129;83130;83131 83129 3 IPGGIIEDSCVLR GRKEIDIKKYARVEKIPGGIIEDSCVLRGV EKIPGGIIEDSCVLRGVMINKDVTHPRMRR K I P L R G 0 1 0 1 1 0 1 2 0 3 1 0 0 0 1 1 0 0 0 1 0 0 13 0 1427.7442 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PQ35 P49368 204 216 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00094542 76.143 By MS/MS By MS/MS 1 2 1.1305 1.0997 9.8595 3 Median 1.1305 1.1071 NaN 1 1 Median 1.1565 1.0114 11.831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12672000 5779100 6893100 4190500 1763800 2426700 8481700 4015300 4466400 0 0 0 0 0 0 0 0 0 0 0 0 15839 2379 16512 82023;82024;82025 83132;83133 83132 2 IPGGLSEAKPATPEIQEIVDK ______________________________ EAKPATPEIQEIVDKVKPQLEEKTNETYGK M I P D K V 2 0 0 1 0 1 3 2 0 3 1 2 0 0 3 1 1 0 0 1 0 0 21 1 2191.1736 P01040;C9J0E4 P01040 2 22 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 3 0.0002852 46.353 By MS/MS By MS/MS By MS/MS 3 2 1 0.10292 0.10954 19.21 4 Median 0.11466 0.11947 7.3669 2 2 Median NaN NaN NaN 0 0 Median 0.093073 0.10581 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.069851 0.080307 NaN 1 1 Median NaN NaN NaN 0 0 Median 37756000 35459000 2296800 16814000 15076000 1738200 0 0 0 11335000 11176000 158190 0 0 0 9607000 9206600 400400 0 0 0 15840 1830 16513 82026;82027;82028;82029;82030;82031 83134;83135;83136;83137;83138;83139;83140 83139 7 IPGIIIAASAVR SIRSLKSDMMSHLVKIPGIIIAASAVRAKA LVKIPGIIIAASAVRAKATRISIQCRSCRN K I P V R A 3 1 0 0 0 0 0 1 0 4 0 0 0 0 1 1 0 0 0 1 0 0 12 0 1179.7339 P33992;B1AHB1;B1AHA9;B1AHB2 P33992 151 162 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 4.5512E-06 103.26 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 2 2 1 2 0.82496 0.82625 18.64 12 Median 0.84892 0.80272 20.392 5 0 Median 1.1866 1.028 18.074 2 0 Median 0.73422 0.76652 0.85079 2 0 Median 1.0974 0.93969 NaN 1 0 Median 0.77958 0.79619 9.9679 2 0 Median NaN NaN NaN 0 0 Median 62574000 34411000 28163000 35201000 19673000 15528000 6192400 2983000 3209300 17316000 9882800 7433500 719920 279370 440550 3144300 1593300 1551000 0 0 0 15841 2224 16514 82032;82033;82034;82035;82036;82037;82038;82039;82040;82041;82042;82043 83141;83142;83143;83144;83145;83146;83147;83148;83149;83150 83144 10 IPGIYVLSLEIGK NPLSMGAIKKMVEKKIPGIYVLSLEIGKTL KKIPGIYVLSLEIGKTLMEDVENSFFLNVN K I P G K T 0 0 0 0 0 0 1 2 0 3 2 1 0 0 1 1 0 0 1 1 0 0 13 0 1400.8279 A0A2C9F2P4;A0A286YFF7;P50897;E9PK48;E9PIA8;Q5T0S4;A0A286YFE3;A0A286YFL8 A0A2C9F2P4 61 73 PPT1 Palmitoyl-protein thioesterase 1 yes no 2 0.00034725 76.143 By MS/MS 2 1.4397 1.2489 9.9106 2 Median NaN NaN NaN 0 0 Median 1.4397 1.2489 9.9106 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2159100 887080 1272000 0 0 0 2159100 887080 1272000 0 0 0 0 0 0 0 0 0 0 0 0 15842 352 16515 82044;82045 83151;83152 83152 2 IPGLLSPHPLLQLSYTATDR KVVEVLAGHGHLYSRIPGLLSPHPLLQLSY SPHPLLQLSYTATDRHPQALEAAQAELQQH R I P D R H 1 1 0 1 0 1 0 1 1 1 5 0 0 0 3 2 2 0 1 0 0 0 20 0 2191.2001 P49327;A0A0U1RQF0 P49327 1256 1275 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 7.2507E-20 131.54 By MS/MS By MS/MS By MS/MS By matching 4 5 1 1 0.89568 0.75611 19.1 11 Median 0.62726 0.5885 6.1979 4 0 Median 0.94489 0.78155 3.6598 5 0 Median 0.80541 0.89041 NaN 1 0 Median 1.2295 1.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 230800000 130620000 100180000 148000000 88823000 59176000 78641000 39602000 39039000 4068000 2147800 1920200 88789 45673 43115 0 0 0 0 0 0 15843 2377 16516 82046;82047;82048;82049;82050;82051;82052;82053;82054;82055;82056 83153;83154;83155;83156;83157;83158;83159;83160;83161;83162;83163;83164;83165;83166;83167;83168;83169;83170;83171 83164 18 IPGLVTLK LIIIQNEDIAGFIHKIPGLVTLKKLPCVSF IAGFIHKIPGLVTLKKLPCVSFAGVDSLDD K I P L K K 0 0 0 0 0 0 0 1 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 839.54804 Q9UK61;A0A087X0F1 Q9UK61 1291 1298 FAM208A Protein FAM208A yes no 2 0.01208 55.676 By matching By MS/MS By matching 1 1 1 0.80867 0.85055 7.5144 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80867 0.73306 NaN 1 0 Median 0.80756 0.85096 NaN 1 0 Median 0.90006 0.77726 NaN 1 0 Median 3362300 1850300 1511900 0 0 0 0 0 0 0 0 0 70815 39711 31104 2972200 1657400 1314800 319240 153210 166030 15844 4307 16517 82057;82058;82059 83172;83173 83173 2 IPGMLIIDTPGHESFSNLR EQTKMIKNFDRENVRIPGMLIIDTPGHESF LIIDTPGHESFSNLRNRGSSLCDIAILVVD R I P L R N 0 1 1 1 0 0 1 2 1 3 2 0 1 1 2 2 1 0 0 0 0 0 19 0 2096.0725 A0A087WUT6;O60841 A0A087WUT6 695 713 EIF5B Eukaryotic translation initiation factor 5B yes no 2;3 1.6612E-18 149.23 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 2 0.92957 0.94073 9.4703 9 Median 0.97258 0.94073 6.0823 3 1 Median 0.95488 0.83011 NaN 1 0 Median 0.87808 0.96586 1.1898 3 2 Median 0.90095 0.78685 3.7292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92071000 44910000 47161000 53682000 25540000 28142000 1250500 571670 678800 34873000 17533000 17339000 2266100 1265500 1000600 0 0 0 0 0 0 15845 35 16518;16519 82060;82061;82062;82063;82064;82065;82066;82067;82068 83174;83175;83176;83177;83178;83179;83180;83181;83182;83183;83184 83174 15 11 IPGNWFQMVSAQER PSIATIGSTCDLNLKIPGNWFQMVSAQERL KIPGNWFQMVSAQERLTRTFTRSSHTYTRT K I P E R L 1 1 1 0 0 2 1 1 0 1 0 0 1 1 1 1 0 1 0 1 0 0 14 0 1661.7984 Q14315 Q14315 2160 2173 FLNC Filamin-C yes yes 2 1.2581E-05 88.441 By MS/MS By MS/MS 2 1 1.1883 1.1573 23.521 3 Plateau 1.1955 1.1571 0.025028 2 0 Median 0.9054 0.7699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25140000 12057000 13084000 22034000 10400000 11634000 3106600 1657000 1449600 0 0 0 0 0 0 0 0 0 0 0 0 15846 2871 16520 82069;82070;82071 83185;83186;83187;83188;83189;83190;83191;83192 83186 8 IPGTDAQAQAEDMNVK EHKPSVIVTRRRSTRIPGTDAQAQAEDMNV PGTDAQAQAEDMNVKLEGEPSVRKPKQRPR R I P V K L 3 0 1 2 0 2 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 16 0 1686.7883 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 575 590 ELMSAN1 ELM2 and SANT domain-containing protein 1 yes no 2 3.492E-06 76.522 By MS/MS 1 1.731 1.4622 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.731 1.4622 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1723800 368730 1355000 0 0 0 0 0 0 0 0 0 1723800 368730 1355000 0 0 0 0 0 0 15847 184 16521 82072 83193 83193 1 IPGVNKEEETESR MAIPGGNQSVLAPSRIPGVNKEEETESREK SRIPGVNKEEETESREKKEDSLRGTPARQS R I P S R E 0 1 1 0 0 0 4 1 0 1 0 1 0 0 1 1 1 0 0 1 0 0 13 1 1486.7264 O60318 O60318 390 402 MCM3AP Germinal-center associated nuclear protein yes yes 3 9.5248E-05 77.912 By MS/MS 1 0.66413 0.79639 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66413 0.79639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6101500 3855800 2245700 0 0 0 0 0 0 6101500 3855800 2245700 0 0 0 0 0 0 0 0 0 15848 1612 16522 82073 83194;83195 83195 2 IPGVPIMYISNHR IVATVDRDLKRRIRKIPGVPIMYISNHRYN RKIPGVPIMYISNHRYNIERMPDDYGAPRF K I P H R Y 0 1 1 0 0 0 0 1 1 3 0 0 1 0 2 1 0 0 1 1 0 0 13 0 1495.797 G3V5S9;G3V1S4;Q9Y324 G3V5S9 156 168 FCF1 rRNA-processing protein FCF1 homolog yes no 3 0.0015025 41.401 By MS/MS 2 0.63783 0.63879 28.073 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63783 0.63879 28.073 2 0 Median NaN NaN NaN 0 0 Median 3203400 1717100 1486400 0 0 0 0 0 0 0 0 0 0 0 0 3203400 1717100 1486400 0 0 0 15849 1104 16523 82074;82075 83196 83196 374 1 IPHEPVINSSNVHVGSR PFSSELISSVSQQERIPHEPVINSSNVHVG HEPVINSSNVHVGSRGSKKNYQSQADIPIR R I P S R G 0 1 2 0 0 0 1 1 2 2 0 0 0 0 2 3 0 0 0 3 0 0 17 0 1840.9544 Q14966 Q14966 351 367 ZNF638 Zinc finger protein 638 yes yes 3;4 5.6476E-06 64.507 By matching By MS/MS By matching By MS/MS By matching 1 2 2 1 1 0.8528 0.75047 22.101 7 Median 0.98488 0.95087 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59033 0.64344 2.5231 2 0 Median 0.87957 0.77339 4.2538 2 0 Median 0.51728 0.53068 NaN 1 0 Median 1.1303 0.97174 NaN 1 0 Median 71125000 43072000 28053000 4077500 2206700 1870800 0 0 0 50920000 31429000 19491000 5805900 3099700 2706200 8617100 5682800 2934300 1705300 654260 1051000 15850 2903 16524 82076;82077;82078;82079;82080;82081;82082 83197;83198;83199;83200 83199 4 IPHFSSLPLDDQVILLR AADKQLFTLVEWAKRIPHFSSLPLDDQVIL HFSSLPLDDQVILLRAGWNELLIASFSHRS R I P L R A 0 1 0 2 0 1 0 0 1 2 4 0 0 1 2 2 0 0 0 1 0 0 17 0 1962.0938 P28702;A0A0G2JKR7;A0A0G2JHI1 P28702 357 373 RXRB Retinoic acid receptor RXR-beta yes no 3 9.3036E-13 101.2 By MS/MS 1 0.682 0.68017 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.682 0.68017 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14793000 8990900 5802000 0 0 0 0 0 0 14793000 8990900 5802000 0 0 0 0 0 0 0 0 0 15851 280 16525 82083 83201 83201 1 IPIAVSGVR SDVQEMILSSATADRIPIAVSGVRGMGFLM SATADRIPIAVSGVRGMGFLMRHHIETGGG R I P V R G 1 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 0 0 0 2 0 0 9 0 910.56 Q92616 Q92616 2522 2530 GCN1L1 Translational activator GCN1 yes yes 2 0.0045216 60.436 By matching By MS/MS By matching 1 1 1 0.92052 0.80596 4.3673 3 Plateau 0.81708 0.80517 NaN 1 0 Median 0.94464 0.80596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71443 0.74688 NaN 1 0 Median NaN NaN NaN 0 0 Median 8527400 4077100 4450400 2978900 1319000 1659900 4063200 2052700 2010500 0 0 0 0 0 0 1485400 705410 779960 0 0 0 15852 3544 16526 82084;82085;82086 83202 83202 1 IPIGFIPLGETSSLSHTLFAESGNK VTGVLRRTDEATFSKIPIGFIPLGETSSLS TSSLSHTLFAESGNKVQHITDATLAIVKGE K I P N K V 1 0 1 0 0 0 2 3 1 3 3 1 0 2 2 4 2 0 0 0 0 0 25 0 2614.3643 E9PC15;A0A3B3ITD0;Q53H12;E9PG39;A0A3B3ISY9;A0A3B3ISZ0;A0A3B3ITX7;A0A3B3IUC9;A0A3B3ITV0 E9PC15 119 143 AGK Acylglycerol kinase, mitochondrial yes no 3 5.9468E-10 60.991 By MS/MS By MS/MS By matching 3 2 3 0.868 0.78074 30.425 8 Median 0.69693 0.66257 1.1487 3 2 Median 1.2631 1.0807 2.6539 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0636 0.91516 41.025 3 0 Median 26138000 14198000 11940000 16774000 9875800 6898600 8208900 3857900 4351000 0 0 0 0 0 0 0 0 0 1155100 464580 690540 15853 435 16527 82087;82088;82089;82090;82091;82092;82093;82094 83203;83204;83205;83206 83204 4 IPIHNEDITYDELVLMMQR GKLIIKAQLGEDIRRIPIHNEDITYDELVL NEDITYDELVLMMQRVFRGKLLSNDEVTIK R I P Q R V 0 1 1 2 0 1 2 0 1 3 2 0 2 0 1 0 1 0 1 1 0 0 19 0 2329.1446 Q92734;C9JTY3;C9JUE0;C9JJP5 Q92734 24 42 TFG Protein TFG yes no 3 0.00053968 31.801 By MS/MS 2 0.97027 0.83216 14.248 2 Median NaN NaN NaN 0 0 Median 0.97027 0.83216 14.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3917900 1874800 2043200 0 0 0 3917900 1874800 2043200 0 0 0 0 0 0 0 0 0 0 0 0 15854 3551 16528 82095;82096 83207;83208 83208 2 IPILLIQQPGK LVPGSQLILGPHESKIPILLIQQPGKVTGE HESKIPILLIQQPGKVTGEDRLGWGSGWDV K I P G K V 0 0 0 0 0 2 0 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1218.77 Q99575 Q99575 595 605 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 2 0.0027074 51.995 By MS/MS By MS/MS By matching 1 2 1 0.95492 0.93553 12.083 4 Median 0.90226 0.89245 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87451 0.93989 19.833 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1349 0.98068 NaN 1 0 Median 6518500 3421000 3097400 3094600 1602100 1492500 0 0 0 3278400 1770600 1507700 0 0 0 0 0 0 145470 48284 97189 15855 3754 16529 82097;82098;82099;82100 83209;83210;83211 83209 3 IPISLVLR TAQALSSGSGSQETKIPISLVLRLRNSKKE SGSQETKIPISLVLRLRNSKKELNDIRFEF K I P L R L 0 1 0 0 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 1 0 0 8 0 909.60114 O95747;C9JIG9 O95747 432 439 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.018519 47.849 By MS/MS By matching By matching By matching By matching By matching 1 1 1 2 1 1 1.2391 1.0952 54.757 7 Median 0.88269 0.86471 NaN 1 0 Median 2.5194 2.2474 NaN 1 0 Median 1.2391 1.3025 NaN 1 0 Median 1.0735 0.94285 7.7227 2 0 Median 3.7053 3.7322 NaN 1 0 Median 1.2424 1.0952 NaN 1 0 Median 7331400 3638900 3692400 4160700 2295800 1864900 224940 70574 154360 2228900 1034300 1194600 188070 79134 108940 472140 136860 335270 56604 22241 34362 15856 1789 16530 82101;82102;82103;82104;82105;82106;82107 83212 83212 1 IPKEEQEETSAIR LVKLICEELKTMLEKIPKEEQEETSAIRVG EKIPKEEQEETSAIRVGFITYNKVLHFFNV K I P I R V 1 1 0 0 0 1 4 0 0 2 0 1 0 0 1 1 1 0 0 0 0 0 13 1 1528.7733 E9PC44;E9PDM8;O94855 E9PC44 28 40 SEC24D Protein transport protein Sec24D yes no 3 0.074678 11.614 By MS/MS 1 1.1822 1.2224 NaN 1 Median 1.1822 1.2224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 978200 442880 535320 978200 442880 535320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15857 910 16531 82108 83213 83213 1 IPKEQGVLSFWR AADKQYKGIVDCIVRIPKEQGVLSFWRGNL IVRIPKEQGVLSFWRGNLANVIRYFPTQAL R I P W R G 0 1 0 0 0 1 1 1 0 1 1 1 0 1 1 1 0 1 0 1 0 0 12 1 1458.7983 P05141;P12236 P12236 61 72 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2;3 0.00017598 80.706 By MS/MS By matching 4 1 1.0271 1.0573 25.616 5 Median 1.055 1.0653 5.1562 4 0 Median 0.63553 0.59981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14477000 6689500 7787500 14251000 6607500 7644000 225530 81985 143550 0 0 0 0 0 0 0 0 0 0 0 0 15858 1977;1861 16532 82109;82110;82111;82112;82113 83214;83215;83216 83214 3 IPLAEWESR VCEDIGRSLLTYGRRIPLAEWESRIAEVDA LTYGRRIPLAEWESRIAEVDASVVREICSK R I P S R I 1 1 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 9 0 1099.5662 P31930 P31930 424 432 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.0027536 69.825 By MS/MS 1 0.83004 0.80811 NaN 1 Median 0.83004 0.80811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6210600 3563400 2647200 6210600 3563400 2647200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15859 2205 16533 82114 83217;83218 83217 2 IPLENLQIIR EVAGYVLIALNTVERIPLENLQIIRGNMYY NTVERIPLENLQIIRGNMYYENSYALAVLS R I P I R G 0 1 1 0 0 1 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1207.7289 Q504U8;E9PFD7;P00533;C9JYS6 Q504U8 99 108 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 2 0.0022391 60.973 By MS/MS By matching 2 1 1.1295 1.1271 19.033 3 Plateau 0.94763 0.95125 23.982 2 0 Median 1.2507 1.1048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3593500 1585700 2007800 2743900 1229200 1514700 849610 356530 493090 0 0 0 0 0 0 0 0 0 0 0 0 15860 918 16534 82115;82116;82117 83219 83219 1 IPLFNTDVDNLEGK PQNVSWEVVAYDDPKIPLFNTDVDNLEGKT KIPLFNTDVDNLEGKTPPVFASEGKYRALK K I P G K T 0 0 2 2 0 0 1 1 0 1 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1573.7988 Q96PZ0 Q96PZ0 596 609 PUS7 Pseudouridylate synthase 7 homolog yes yes 2 0.0014971 62.303 By MS/MS 1 0.76008 0.67172 NaN 1 Median NaN NaN NaN 0 0 Median 0.76008 0.67172 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2195300 1288400 906850 0 0 0 2195300 1288400 906850 0 0 0 0 0 0 0 0 0 0 0 0 15861 3716 16535 82118 83220 83220 1 IPLGLDLK GTNPGTEDIQFPIQKIPLGLDLKNLRLPRR IQFPIQKIPLGLDLKNLRLPRRKMSFDIID K I P L K N 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 867.54295 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 312 319 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.014079 51.787 By MS/MS By MS/MS 1 2 0.79969 0.82695 9.9072 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72779 0.78569 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84893 0.88699 9.9128 2 0 Median NaN NaN NaN 0 0 Median 8172800 4322200 3850600 0 0 0 0 0 0 2341600 1246500 1095100 0 0 0 5831200 3075800 2755500 0 0 0 15862 1437 16536 82119;82120;82121 83221;83222;83223 83221 3 IPLHTVR VGLLRIKGRKMNMHKIPLHTVRQFFMEDIV GRKMNMHKIPLHTVRQFFMEDIVLANHPDI K I P V R Q 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 0 7 0 834.50757 P49959;F8W7U8 P49959 299 305 MRE11A Double-strand break repair protein MRE11A yes no 2 0.015644 70.912 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1.0002 0.93222 27.473 9 Median 0.89649 0.8964 15.473 2 0 Median 1.0055 0.87634 23.462 2 0 Median 0.6814 0.67773 61.637 2 0 Median 1.1162 0.96114 4.3216 2 0 Median 0.7487 0.79856 NaN 1 0 Median NaN NaN NaN 0 0 Median 13027000 6476600 6550200 1101200 566430 534740 2732100 1307700 1424400 6724800 3324000 3400800 1370600 651300 719340 1098100 627190 470900 0 0 0 15863 2407 16537 82122;82123;82124;82125;82126;82127;82128;82129;82130 83224;83225;83226;83227;83228;83229 83225 6 IPLLSDLTHQISK WINTPRRQGGLGPIRIPLLSDLTHQISKDY IRIPLLSDLTHQISKDYGVYLEDSGHTLRG R I P S K D 0 0 0 1 0 1 0 0 1 2 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1463.8348 Q13162;H7C3T4;A6NJJ0 Q13162 174 186 PRDX4 Peroxiredoxin-4 yes no 2;3 2.1262E-07 136.5 By MS/MS By MS/MS By MS/MS By matching By matching By matching 7 10 1 1 1 3 1.1322 0.99856 23.275 23 Median 1.0289 0.99856 13.908 7 0 Median 1.1564 0.98131 22.489 10 0 Median 1.0764 1.0308 NaN 1 0 Median 1.4 1.1268 NaN 1 0 Median 1.5221 1.5605 NaN 1 0 Median 1.3923 1.1517 36.032 3 0 Plateau 1606100000 739420000 866640000 900850000 434520000 466330000 695650000 300710000 394940000 2745200 1244500 1500700 127820 56852 70968 1505600 549390 956200 5173200 2333400 2839800 15864 2793 16538 82131;82132;82133;82134;82135;82136;82137;82138;82139;82140;82141;82142;82143;82144;82145;82146;82147;82148;82149;82150;82151;82152;82153 83230;83231;83232;83233;83234;83235;83236;83237;83238;83239;83240;83241;83242;83243;83244 83244 15 IPLNDLFR EDKGILTVDELLAIRIPLNDLFRCNSLSTL DELLAIRIPLNDLFRCNSLSTLEKNDVVQH R I P F R C 0 1 1 1 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 986.55492 P13473 P13473 145 152 LAMP2 Lysosome-associated membrane glycoprotein 2 yes yes 2 0.0035134 91.626 By MS/MS By MS/MS By matching By matching By matching 5 5 1 3 1 1.1905 1.0916 29.473 15 Median 1.3472 1.359 15.814 5 1 Median 0.90878 0.89735 27.85 5 0 Median 1.1794 1.2619 NaN 1 0 Median 1.0532 0.93042 29.929 3 0 Median 1.2504 1.3262 NaN 1 0 Median NaN NaN NaN 0 0 Median 108700000 47642000 61054000 55747000 25053000 30694000 50019000 21175000 28843000 1812400 898200 914180 429590 208410 221180 688080 307100 380980 0 0 0 15865 1990 16539 82154;82155;82156;82157;82158;82159;82160;82161;82162;82163;82164;82165;82166;82167;82168 83245;83246;83247;83248;83249;83250;83251;83252 83246 8 IPLNPYLNLHSLLPASNLAGK PPGVSLLGEPPKDYRIPLNPYLNLHSLLPA LNLHSLLPASNLAGKEARGWGGAGRSRRPA R I P G K E 2 0 3 0 0 0 0 1 1 1 6 1 0 0 3 2 0 0 1 0 0 0 21 0 2244.263 A0A087WZ13;E9PAU2 A0A087WZ13 504 524 RAVER1 yes no 3 2.8019E-12 76.176 By matching By MS/MS By MS/MS 1 4 2 0.32533 0.32568 11.377 7 Median 0.31102 0.31666 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.31682 0.3234 9.4659 4 0 Median NaN NaN NaN 0 0 Median 0.39837 0.39787 5.7127 2 0 Median NaN NaN NaN 0 0 Median 14794000 10614000 4179800 653190 472510 180680 0 0 0 12929000 9289400 3639300 0 0 0 1211800 851950 359860 0 0 0 15866 90 16540 82169;82170;82171;82172;82173;82174;82175 83253;83254;83255;83256;83257 83255 5 IPLNTEQK CPELGRVSLELHIERIPLNTEQKALKVLRI LELHIERIPLNTEQKALKVLRICEQRQMTE R I P Q K A 0 0 1 0 0 1 1 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 8 0 941.5182 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7;J3QLD4 Q9BW27 442 449 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.0035902 86.953 By matching By MS/MS By matching By matching 2 3 2 1 0.98298 1.003 25.123 8 Median NaN NaN NaN 0 0 Median 1.1284 0.97702 20.995 2 0 Median 0.99547 1.0602 21.034 3 0 Median 1.1623 1.0212 38.59 2 0 Median NaN NaN NaN 0 0 Median 0.82955 0.71231 NaN 1 0 Median 10578000 4905900 5672300 0 0 0 2667600 1131500 1536100 6334700 2976100 3358600 733320 365760 367560 0 0 0 842610 432510 410100 15867 3861 16541 82176;82177;82178;82179;82180;82181;82182;82183 83258;83259 83258 2 IPLPGAEMLEEEPLYVNAK VMMVPGAGSVPAIQRIPLPGAEMLEEEPLY GAEMLEEEPLYVNAKQYHRILKRRQARAKL R I P A K Q 2 0 1 0 0 0 4 1 0 1 3 1 1 0 3 0 0 0 1 1 0 0 19 0 2112.0813 P23511 P23511 252 270 NFYA Nuclear transcription factor Y subunit alpha yes yes 2;3 2.5426E-06 55.452 By MS/MS 2 0.59259 0.6394 0.65726 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59259 0.6394 0.65726 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9120500 5581900 3538600 0 0 0 0 0 0 9120500 5581900 3538600 0 0 0 0 0 0 0 0 0 15868 2115 16542 82184;82185 83260;83261;83262;83263 83261 4 IPLSPVHK FSTEDFSNCLYQDFRIPLSPVHKCSFYKNN CLYQDFRIPLSPVHKCSFYKNNTKVSYGFL R I P H K C 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2 1 0 0 0 1 0 0 8 0 889.53854 P22413 P22413 718 725 ENPP1 Ectonucleotide pyrophosphatase/phosphodiesterase family member 1;Alkaline phosphodiesterase I;Nucleotide pyrophosphatase yes yes 2 0.047133 35.356 By MS/MS 1 1.079 0.94516 NaN 1 Median NaN NaN NaN 0 0 Median 1.079 0.94516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2424400 1237500 1186900 0 0 0 2424400 1237500 1186900 0 0 0 0 0 0 0 0 0 0 0 0 15869 2101 16543 82186 83264 83264 1 IPMPDFDLHLKGPK GPKFKMPEMNIKAPKIPMPDFDLHLKGPKV KIPMPDFDLHLKGPKVKGDVDISLPKVEGD K I P P K V 0 0 0 2 0 0 0 1 1 1 2 2 1 1 3 0 0 0 0 0 0 0 14 1 1606.8541 Q09666 Q09666 2963 2976 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 0.00096562 39.746 By MS/MS By matching 2 2 0.7454 0.82438 10.439 4 Median 0.7454 0.8118 0.072265 2 0 Median NaN NaN NaN 0 0 Median 0.808 0.91858 13.2 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22701000 13542000 9159300 17474000 10756000 6718100 0 0 0 5227600 2786300 2441300 0 0 0 0 0 0 0 0 0 15870 2749 16544 82187;82188;82189;82190 83265;83266 83265 2 IPMPVNFNEPLSMLQR LWSIMKNCIGKELSKIPMPVNFNEPLSMLQ PMPVNFNEPLSMLQRLTEDLEYHELLDRAA K I P Q R L 0 1 2 0 0 1 1 0 0 1 2 0 2 1 3 1 0 0 0 1 0 0 16 0 1884.959 P22059;H0YCV6;A0A0A0MSB4;Q6ZN50;Q969R2;H7C1R2;H7C368;H7C428 P22059 434 449 OSBP;OSBP2 Oxysterol-binding protein 1;Oxysterol-binding protein;Oxysterol-binding protein 2 yes no 2 0.00013453 57.836 By MS/MS By MS/MS 1 1 0.78922 0.7226 5.3463 2 Median 0.71921 0.69579 NaN 1 0 Median 0.86604 0.75044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7541800 3978200 3563600 3822200 2192100 1630100 3719600 1786100 1933500 0 0 0 0 0 0 0 0 0 0 0 0 15871 2096 16545 82191;82192 83267;83268;83269;83270 83270 4 IPNFDVR LINGAEGIGTGWSCKIPNFDVREIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP K I P V R E 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 7 0 859.4552 P11388 P11388 864 870 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.015319 71.852 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 4 1.0882 1.0293 16.522 12 Median 1.009 1.0127 NaN 1 0 Median 1.145 0.96739 NaN 1 0 Median 0.94214 1.0314 12.324 2 0 Median 1.3291 1.1518 4.0328 2 0 Median 0.86348 0.87295 25.609 2 0 Median 1.2447 1.023 21.203 4 0 Median 93215000 43766000 49449000 1176200 588800 587390 971690 493930 477760 27962000 13016000 14946000 4473800 1822700 2651100 51285000 24636000 26649000 7346500 3208000 4138500 15872 1963 16546 82193;82194;82195;82196;82197;82198;82199;82200;82201;82202;82203;82204 83271;83272;83273;83274;83275;83276;83277;83278;83279;83280 83272 10 IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR LRQPFFQKRSELIAKIPNFWVTTFVNHPQV LLGEEDEEALHYLTRVEVTEFEDIKSGYRI K I P T R V 2 1 2 1 0 1 4 1 2 1 4 0 0 2 2 1 3 1 1 3 0 0 32 0 3724.8526 Q01105;A0A0C4DFV9 Q01105 91 122 SET Protein SET yes no 3;4 3.6985E-30 79.458 By MS/MS 2 0.81063 0.701 4.9228 2 Median NaN NaN NaN 0 0 Median 0.81063 0.701 4.9228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13875000 7073000 6801900 0 0 0 13875000 7073000 6801900 0 0 0 0 0 0 0 0 0 0 0 0 15873 2683 16547 82205;82206 83281;83282;83283;83284 83284 4 IPNIYAIGDVVAGPMLAHK DPRGRIPVNTRFQTKIPNIYAIGDVVAGPM YAIGDVVAGPMLAHKAEDEGIICVEGMAGG K I P H K A 3 0 1 1 0 0 0 2 1 3 1 1 1 0 2 0 0 0 1 2 0 0 19 0 1978.071 E9PEX6;P09622 E9PEX6 324 342 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 3 7.3378E-08 62.203 By MS/MS By MS/MS By MS/MS 2 1 2 0.6786 0.66886 19.017 5 Median 0.67618 0.65898 2.1039 2 0 Median 1.0458 0.88615 NaN 1 0 Median 0.61654 0.62717 24.365 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20823000 11149000 9673700 3729300 2140900 1588400 12739000 6026200 6712900 4354700 2982300 1372400 0 0 0 0 0 0 0 0 0 15874 915 16548 82207;82208;82209;82210;82211 83285;83286;83287;83288;83289 83289 5 IPNPDFFEDLEPFR MIDNPSYQGIWKPRKIPNPDFFEDLEPFRM KIPNPDFFEDLEPFRMTPFSAIGLELWSMT K I P F R M 0 1 1 2 0 0 2 0 0 1 1 0 0 3 3 0 0 0 0 0 0 0 14 0 1734.8253 P27824 P27824 402 415 CANX Calnexin yes yes 2 8.2179E-05 83.397 By matching By MS/MS 1 1 0.71423 0.65871 1.59 2 Median 0.66356 0.65135 NaN 1 0 Median 0.76877 0.66616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6172000 3411700 2760300 2504900 1407000 1097900 3667100 2004700 1662400 0 0 0 0 0 0 0 0 0 0 0 0 15875 2158 16549 82212;82213 83290;83291;83292 83292 3 IPNQFQSDPPAPSDK NEDGSLQKKLKVWFRIPNQFQSDPPAPSDK IPNQFQSDPPAPSDKSVKIEEREGITVYSM R I P D K S 1 0 1 2 0 2 0 0 0 1 0 1 0 1 4 2 0 0 0 0 0 0 15 0 1639.7842 Q9NRV9;A0A3B3IRV5;F5GWX2;H0YG71 Q9NRV9 104 118 HEBP1 Heme-binding protein 1 yes no 2 6.3532E-08 98.156 By MS/MS By MS/MS 1 1 0.53029 0.46884 30.422 2 Median 0.40686 0.3781 NaN 1 0 Median 0.69117 0.58136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23081000 16882000 6199000 18589000 14121000 4468300 4491700 2761000 1730700 0 0 0 0 0 0 0 0 0 0 0 0 15876 4088 16550 82214;82215 83293;83294;83295 83294 3 IPNTVEEAVR FVQVDELMEIFRRCKIPNTVEEAVRIITGG FRRCKIPNTVEEAVRIITGGAPELAVEGNG K I P V R I 1 1 1 0 0 0 2 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 10 0 1126.5982 Q12996;E9PLP8;H0YE74 Q12996 648 657 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 7.6662E-05 124.98 By matching By MS/MS By MS/MS 1 1 2 1.2168 1.1091 42.051 4 Median 1.4201 1.369 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71628 0.71993 NaN 1 1 Median 1.3093 1.2859 50.697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55616000 28607000 27009000 4305300 1808900 2496400 0 0 0 44012000 23710000 20302000 7298500 3087700 4210800 0 0 0 0 0 0 15877 2777 16551 82216;82217;82218;82219 83296;83297;83298 83296 3 IPPLNPGQGPGPNK PPLIPGLGQQGAQGRIPPLNPGQGPGPNKG RIPPLNPGQGPGPNKGDSRGPPNHHMGPMS R I P N K G 0 0 2 0 0 1 0 3 0 1 1 1 0 0 5 0 0 0 0 0 0 0 14 0 1384.7463 Q9C0J8 Q9C0J8 943 956 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2 2.3558E-05 82.287 By MS/MS By MS/MS 1 1 0.45483 0.41164 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45483 0.41164 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2170700 1445300 725350 0 0 0 0 0 0 0 0 0 2170700 1445300 725350 0 0 0 0 0 0 15878 3907 16552 82220;82221 83299;83300 83299 2 IPPNWYPDAR VLDCKDDLRKISDLRIPPNWYPDARAMQRK ISDLRIPPNWYPDARAMQRKIIFHSGPTNS R I P A R A 1 1 1 1 0 0 0 0 0 1 0 0 0 0 3 0 0 1 1 0 0 0 10 0 1227.6037 Q8IYB8 Q8IYB8 187 196 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.05173 46.158 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15879 3342 16553 82222 83301 83301 1 IPPPVIMVQNVSFK VSDKTLSFYFPPCGKIPPPVIMVQNVSFKY KIPPPVIMVQNVSFKYTKDGPCIYNNLEFG K I P F K Y 0 0 1 0 0 1 0 0 0 2 0 1 1 1 3 1 0 0 0 3 0 0 14 0 1567.8796 Q9UG63 Q9UG63 391 404 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.011642 33.088 By matching By MS/MS 1 1 0.9157 0.95172 3.4575 2 Median 0.91456 0.92874 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91685 0.97528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3917300 2096400 1820900 455660 237820 217830 0 0 0 3461700 1858600 1603100 0 0 0 0 0 0 0 0 0 15880 4262 16554 82223;82224 83302;83303 83302 2 IPPSSAPTVLSVPAGTTIVK SGMAALAAAAAATQKIPPSSAPTVLSVPAG APTVLSVPAGTTIVKTMAVTPGTTTLPATV K I P V K T 2 0 0 0 0 0 0 1 0 2 1 1 0 0 4 3 3 0 0 3 0 0 20 0 1934.1088 A6NEM2;P51610 A6NEM2 559 578 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 2.6221E-08 75.669 By MS/MS By matching 1 1 0.53472 0.51506 11.698 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44079 0.47417 NaN 1 0 Median 0.64867 0.55947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7033500 5131400 1902200 0 0 0 0 0 0 6803000 5026000 1777100 230490 105410 125080 0 0 0 0 0 0 15881 509;2438 16555 82225;82226 83304;83305;83306;83307 83306 4 IPQAIAQLSK DWETKNFDFEDVFVKIPQAIAQLSKEAGVE DVFVKIPQAIAQLSKEAGVEKFIHVSHLNA K I P S K E 2 0 0 0 0 2 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 10 0 1067.6339 A0A3B3ISG8;Q16795 A0A3B3ISG8 148 157 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 3.1916E-05 142.56 By MS/MS By MS/MS By matching By matching 1 1 1 2 0.85461 0.74553 13.168 5 Median 0.85461 0.77458 NaN 1 0 Median 1.1526 0.96882 NaN 1 0 Median 0.77866 0.74553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85024 0.70841 4.3459 2 0 Median 61010000 32212000 28799000 46055000 24907000 21147000 7552200 3349300 4202900 4459800 2420800 2039000 0 0 0 0 0 0 2943600 1534100 1409500 15882 424 16556 82227;82228;82229;82230;82231 83308;83309;83310;83311 83308 4 IPQALEK GDENREMDDPSVGPKIPQALEKILQLKESR DDPSVGPKIPQALEKILQLKESRQEEMNSQ K I P E K I 1 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 7 0 797.4647 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 269 275 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.024149 70.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.4463 1.2767 10.594 5 Median NaN NaN NaN 0 0 Median 1.4463 1.2391 NaN 1 1 Median 1.1559 1.2477 NaN 1 1 Median 1.642 1.3775 NaN 1 1 Median 1.3696 1.4275 15.785 2 2 Median NaN NaN NaN 0 0 Median 15986000 3754200 12232000 0 0 0 4598100 901870 3696200 2308200 611470 1696700 1222900 250470 972390 7856900 1990400 5866500 0 0 0 15883 2817 16557 82232;82233;82234;82235;82236 83312;83313;83314;83315;83316 83314 5 IPQDRPTSEELLK WSDYFRNFVDSCLQKIPQDRPTSEELLKHI QKIPQDRPTSEELLKHIFVLRERPETVLID K I P L K H 0 1 0 1 0 1 2 0 0 1 2 1 0 0 2 1 1 0 0 0 0 0 13 1 1524.8148 Q7L7X3 Q7L7X3 265 277 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 3 0.015999 37.248 By MS/MS 2 0.79232 0.76143 22.578 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79232 0.76143 22.578 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8744400 5283300 3461100 0 0 0 0 0 0 0 0 0 8744400 5283300 3461100 0 0 0 0 0 0 15884 3227 16558 82237;82238 83317;83318 83317 2 IPQERPTSAELLR WTDSFRRFVDYCLQKIPQERPTSAELLRHD QKIPQERPTSAELLRHDFVRRDRPLRVLID K I P L R H 1 2 0 0 0 1 2 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 13 1 1508.8311 Q9H2K8;H0YF68 Q9H2K8 261 273 TAOK3 Serine/threonine-protein kinase TAO3 yes no 3 0.0001616 71.879 By MS/MS By MS/MS 1 1 0.80997 0.86147 28.342 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91099 1.0526 NaN 1 0 Median 0.72015 0.70502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12780000 7140100 5639500 0 0 0 0 0 0 6536800 3454400 3082400 6242700 3685700 2557000 0 0 0 0 0 0 15885 3944 16559 82239;82240 83319;83320;83321;83322 83322 4 IPQGTVGQVMLDDR TPKLLYPLGGQTNLRIPQGTVGQVMLDDRA RIPQGTVGQVMLDDRAYLVRWEYSYSSWTL R I P D R A 0 1 0 2 0 2 0 2 0 1 1 0 1 0 1 0 1 0 0 2 0 0 14 0 1527.7715 Q5SRE5 Q5SRE5 513 526 NUP188 Nucleoporin NUP188 homolog yes yes 2 8.0366E-24 132.32 By MS/MS By MS/MS 1 1 0.90485 0.79415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90485 0.79415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1499200 799230 699990 0 0 0 0 0 0 0 0 0 1499200 799230 699990 0 0 0 0 0 0 15886 3074 16560 82241;82242 83323;83324 83323 2 IPQLLLER VVVISGDTGCGKTTRIPQLLLERYVTEGRG GCGKTTRIPQLLLERYVTEGRGARCNVIIT R I P E R Y 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 0 980.60187 H7BXY3;Q7L2E3 H7BXY3 439 446 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0042854 83.265 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1.1726 1.0944 10.085 7 Median 1.0747 1.0392 NaN 1 0 Median 1.2627 1.068 NaN 1 0 Median 1.0888 1.1978 NaN 1 0 Median 1.4885 1.3023 NaN 1 0 Median 1.1053 1.161 8.3542 2 1 Median 1.2023 0.98481 NaN 1 0 Median 21873000 9541800 12331000 4968300 2250300 2718000 4415800 1702800 2713100 4211500 1850900 2360500 68420 26705 41715 7431200 3311700 4119600 777350 399520 377830 15887 1244 16561 82243;82244;82245;82246;82247;82248;82249 83325;83326;83327;83328;83329 83327 5 IPQNPSPHTHQQQNAPVTVIQSK FPVQGVHTVAQTVSRIPQNPSPHTHQQQNA THQQQNAPVTVIQSKAPIPCEVVKATVIQN R I P S K A 1 0 2 0 0 5 0 0 2 2 0 1 0 0 4 2 2 0 0 2 0 0 23 0 2548.3146 Q68CP9;F8WCU9;F8W108 Q68CP9 684 706 ARID2 AT-rich interactive domain-containing protein 2 yes no 3;4 3.2123E-10 50.776 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.51077 0.53559 16.142 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41642 0.45732 14.631 3 0 Median 0.68324 0.602 1.8829 2 0 Median 0.51077 0.53559 NaN 1 0 Median 0.48684 0.40495 NaN 1 1 Median 82046000 54138000 27908000 0 0 0 0 0 0 64766000 43305000 21461000 11516000 6966300 4549600 4827800 3222900 1604900 936710 644330 292380 15888 3122 16562 82250;82251;82252;82253;82254;82255;82256 83330;83331;83332;83333;83334;83335;83336;83337;83338;83339;83340;83341 83333 12 IPQSTLSEFYPR GWQLLRIFPKEMLKRIPQSTLSEFYPRDSA LKRIPQSTLSEFYPRDSAKH__________ R I P P R D 0 1 0 0 0 1 1 0 0 1 1 0 0 1 2 2 1 0 1 0 0 0 12 0 1436.73 P21281 P21281 495 506 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 2 0.0046806 63.283 By MS/MS By MS/MS 1 1 0.92887 0.90884 NaN 1 Median 0.92887 0.90884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5439700 2375100 3064600 5439700 2375100 3064600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15889 2086 16563 82257;82258 83342;83343 83342 2 IPSAVGYQPTLATDMGTMQER RFTQAGSEVSALLGRIPSAVGYQPTLATDM YQPTLATDMGTMQERITTTKKGSITSVQAI R I P E R I 2 1 0 1 0 2 1 2 0 1 1 0 2 0 2 1 3 0 1 1 0 0 21 0 2265.077 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 325 345 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2;3 1.9189E-23 121.13 By MS/MS By matching By MS/MS By matching 7 1 2 1 0.76262 0.72269 32.053 11 Median 0.73962 0.70847 22.351 7 1 Median 0.64295 0.55514 NaN 1 0 Median 0.91843 0.91411 4.295 2 0 Median NaN NaN NaN 0 0 Median 1.5224 1.5345 NaN 1 0 Median NaN NaN NaN 0 0 Median 170110000 92510000 77601000 153910000 84017000 69898000 194540 128440 66100 14466000 7736900 6728700 0 0 0 1535800 627390 908370 0 0 0 15890 1872 16564;16565 82259;82260;82261;82262;82263;82264;82265;82266;82267;82268;82269 83344;83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355;83356;83357;83358 83351 629;630 15 IPSEDHQVLYR LLFTAFENALGLSDKIPSEDHQVLYRHFIQ LSDKIPSEDHQVLYRHFIQSLSKFPHESAR K I P Y R H 0 1 0 1 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1355.6834 Q6PGP7;D6RCE2;H0Y964 Q6PGP7 196 206 TTC37 Tetratricopeptide repeat protein 37 yes no 3 0.00015247 67.153 By MS/MS 1 0.95421 0.8058 NaN 1 Median NaN NaN NaN 0 0 Median 0.95421 0.8058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2413700 1276000 1137700 0 0 0 2413700 1276000 1137700 0 0 0 0 0 0 0 0 0 0 0 0 15891 3169 16566 82270 83359;83360 83359 2 IPSEQEQLR QPLIQDRCFLSWLVKIPSEQEQLRARQITA LSWLVKIPSEQEQLRARQITAQQINKLEEL K I P L R A 0 1 0 0 0 2 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 9 0 1098.5669 Q92900 Q92900 245 253 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00040442 132.57 By MS/MS By MS/MS By MS/MS 1 1 1 0.84641 0.71322 17.965 3 Median 0.98665 0.96824 NaN 1 0 Median 0.84641 0.70567 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8372 0.71322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18502000 8537300 9964500 2488300 1296600 1191700 14373000 6382700 7990600 0 0 0 1640200 858020 782180 0 0 0 0 0 0 15892 3564 16567 82271;82272;82273 83361;83362;83363;83364;83365 83364 5 IPSISDLK ANSDEQLGEMFLEEKIPSISDLKLAIRRAT EMFLEEKIPSISDLKLAIRRATLKRSFTPV K I P L K L 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 0 8 0 871.50148 Q96RP9;F8WAU4;C9IZ01 Q96RP9 273 280 GFM1 Elongation factor G, mitochondrial yes no 2 0.0088504 61.962 By MS/MS By matching 2 2 1.0988 0.99689 30.036 4 Median 0.90623 0.85251 17.973 2 0 Median 1.4493 1.2614 29.127 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12383000 5709900 6673400 9625700 4632500 4993200 2757600 1077400 1680200 0 0 0 0 0 0 0 0 0 0 0 0 15893 3728 16568 82274;82275;82276;82277 83366;83367 83366 2 IPSIVSSPLNSPLDR QSLEKMSSPLADAKRIPSIVSSPLNSPLDR IPSIVSSPLNSPLDRSGIDITDFQAKREKV R I P D R S 0 1 1 1 0 0 0 0 0 2 2 0 0 0 3 4 0 0 0 1 0 0 15 0 1593.8726 P49790 P49790 328 342 NUP153 Nuclear pore complex protein Nup153 yes yes 2 3.049E-09 99.522 By MS/MS By MS/MS By matching 1 1 1 0.55332 0.48439 19.56 3 Median 0.43784 0.43862 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.58267 0.63967 NaN 1 0 Median 0.55332 0.48439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8984700 5696200 3288500 2049200 1475600 573690 0 0 0 6612300 4008900 2603400 323130 211740 111380 0 0 0 0 0 0 15894 2400 16569 82278;82279;82280 83368;83369 83369 2 IPSPLGYAAIPIK VARRRKCAARDPEDRIPSPLGYAAIPIKFS DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R I P I K F 2 0 0 0 0 0 0 1 0 3 1 1 0 0 3 1 0 0 1 0 0 0 13 0 1338.7911 Q9Y3A4 Q9Y3A4 17 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 0.0028429 46.891 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 2 0.83762 0.71244 12.624 7 Median 0.83762 0.82939 NaN 1 0 Median 0.80962 0.67981 6.6297 2 0 Median 0.69193 0.66252 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55991 0.56024 NaN 1 0 Median 0.91488 0.74658 0.29602 2 2 Median 24144000 14976000 9168200 717710 349460 368250 1786900 952860 834050 4487600 2664300 1823300 0 0 0 9765000 7162900 2602200 7386500 3846000 3540500 15895 4412 16570 82281;82282;82283;82284;82285;82286;82287 83370;83371;83372;83373;83374 83370 5 IPSTENSSQEISVEER PHSTPPQSCTSDLSKIPSTENSSQEISVEE PSTENSSQEISVEERTPTKASVPPDLPPPP K I P E R T 0 1 1 0 0 1 4 0 0 2 0 0 0 0 1 4 1 0 0 1 0 0 16 0 1803.8487 Q96T58 Q96T58 2405 2420 SPEN Msx2-interacting protein yes yes 2 3.5582E-10 115.57 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.8432 0.79518 7.8768 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75312 0.79518 NaN 1 0 Median 0.93007 0.81293 3.7466 2 0 Median 0.83517 0.87394 NaN 1 0 Median 0.8432 0.7076 NaN 1 0 Median 18969000 10429000 8539800 0 0 0 0 0 0 10108000 5641100 4466800 3345900 1674300 1671600 4724100 2790400 1933700 791240 323550 467690 15896 3741 16571 82288;82289;82290;82291;82292 83375;83376;83377;83378;83379;83380;83381 83375 7 IPTISTQLK TDKRIRTNLLQVCERIPTISTQLKILSTVK LQVCERIPTISTQLKILSTVKATMLGRTNI R I P L K I 0 0 0 0 0 1 0 0 0 2 1 1 0 0 1 1 2 0 0 0 0 0 9 0 999.59645 P18206 P18206 1056 1064 VCL Vinculin yes yes 2 0.0011471 84.743 By MS/MS By MS/MS By MS/MS By matching 2 4 1 2 0.99804 0.88858 21.605 9 Median 0.84077 0.81174 14.577 2 0 Median 1.137 0.99949 19.049 4 0 Median 0.77005 0.8352 NaN 1 0 Median 1.3767 1.1265 33.552 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59014000 29720000 29294000 28159000 14217000 13941000 25040000 12431000 12609000 4561400 2523400 2038000 1253400 547540 705840 0 0 0 0 0 0 15897 2057 16572 82293;82294;82295;82296;82297;82298;82299;82300;82301 83382;83383;83384;83385;83386 83383 5 IPTNYLR PLVVDYRQKAAAAGRIPTNYLRREIGTSDK QKAAAAGRIPTNYLRREIGTSDKEILTSRI R I P L R R 0 1 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 7 0 875.4865 Q8TCS8;H7BXF6 Q8TCS8 112 118 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes no 2 0.0036486 103.28 By MS/MS By MS/MS By MS/MS 1 1 1 1.0674 1.0295 8.5078 3 Median 1.0674 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9845 1.0295 NaN 1 1 Median 1.371 1.1814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15394000 7541600 7852400 7376500 3556100 3820400 0 0 0 5315900 2820700 2495200 2701600 1164900 1536700 0 0 0 0 0 0 15898 3467 16573 82302;82303;82304 83387;83388;83389;83390 83388 4 IPTRPFEEGKK EGSLGCGIGYGYLHRIPTRPFEEGKKISLP YLHRIPTRPFEEGKKISLPGQMAGTPITPL R I P K K I 0 1 0 0 0 0 2 1 0 1 0 2 0 1 2 0 1 0 0 0 0 0 11 2 1300.7139 Q9H8Y8 Q9H8Y8 202 212 GORASP2 Golgi reassembly-stacking protein 2 yes yes 3 0.0027437 40.616 By matching By MS/MS By matching 1 2 1 0.84513 0.92167 3.4003 4 Median 0.8461 0.94545 NaN 1 0 Median 0.83369 0.92267 4.6577 2 0 Median NaN NaN NaN 0 0 Median 0.84416 0.89848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7816300 4226400 3589900 2819500 1588100 1231400 4898200 2596600 2301500 0 0 0 98708 41713 56995 0 0 0 0 0 0 15899 3991 16574 82305;82306;82307;82308 83391 83391 1 IPVDTYNNILTVLK ATSSAVSKELTRLLKIPVDTYNNILTVLKL KIPVDTYNNILTVLKLKHFHPLFEYFDYES K I P L K L 0 0 2 1 0 0 0 0 0 2 2 1 0 0 1 0 2 0 1 2 0 0 14 0 1601.9029 Q96QK1 Q96QK1 404 417 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 1.7496E-06 125.54 By MS/MS By matching By matching By matching 2 1 1 1 1.0803 0.96627 13.865 5 Median NaN NaN NaN 0 0 Median 1.2159 1.0577 15.686 2 0 Median 0.94808 1.0078 NaN 1 0 Median 1.0974 0.96627 NaN 1 0 Median 0.77684 0.80259 NaN 1 0 Median NaN NaN NaN 0 0 Median 65628000 31555000 34072000 0 0 0 61033000 29218000 31815000 3906800 1993500 1913300 350990 153200 197790 336480 190250 146230 0 0 0 15900 3722 16575 82309;82310;82311;82312;82313 83392;83393 83392 2 IPVENILGEVGDGFK IRGSNTCEVHFENTKIPVENILGEVGDGFK IPVENILGEVGDGFKVAMNILNSGRFSMGS K I P F K V 0 0 1 1 0 0 2 3 0 2 1 1 0 1 1 0 0 0 0 2 0 0 15 0 1585.8352 Q9H845;H0Y8Z9 Q9H845 280 294 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 9.7573E-08 144.57 By MS/MS By MS/MS By MS/MS 1 3 1 0.98251 0.84237 18.628 5 Median 0.82229 0.78469 NaN 1 0 Median 1.2092 1.0178 19.617 3 0 Median 0.83134 0.84237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19328000 9135900 10192000 5942800 3148900 2793900 9367900 4026300 5341600 4017400 1960700 2056700 0 0 0 0 0 0 0 0 0 15901 3988 16576 82314;82315;82316;82317;82318 83394;83395;83396;83397;83398;83399;83400;83401;83402;83403 83400 10 IPVFDAGHER AKLANVRAVPGTDLKIPVFDAGHERRRKEQ GTDLKIPVFDAGHERRRKEQLERLYNRTPE K I P E R R 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1139.5724 Q9NPF5;Q5TG40;Q5TG38;Q5TG39 Q9NPF5 215 224 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 0.0072129 48.091 By MS/MS 1 1.0538 0.90691 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0538 0.90691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1868900 784400 1084500 0 0 0 0 0 0 0 0 0 1868900 784400 1084500 0 0 0 0 0 0 15902 4050 16577 82319 83404 83404 1 IPVGPETLGR LVRGQKVLDSGAPIKIPVGPETLGRIMNVI GAPIKIPVGPETLGRIMNVIGEPIDERGPI K I P G R I 0 1 0 0 0 0 1 2 0 1 1 0 0 0 2 0 1 0 0 1 0 0 10 0 1037.5869 P06576;H0YH81;F8W079 P06576 134 143 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 0.00043466 74.464 By MS/MS By MS/MS By matching 1 2 1 0.91962 0.82818 52.86 4 Median 0.82242 0.77456 NaN 1 0 Median 0.5921 0.51475 77.662 2 0 Median NaN NaN NaN 0 0 Median 1.0283 0.88551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56544000 29068000 27476000 27300000 14990000 12311000 27511000 13262000 14249000 0 0 0 1731900 815730 916160 0 0 0 0 0 0 15903 1872 16578 82320;82321;82322;82323 83405;83406;83407;83408;83409 83408 5 IPVIAVDSDKNQLATANK GTMGRGIVISFARARIPVIAVDSDKNQLAT IAVDSDKNQLATANKMITSVLEKEASKMQQ R I P N K M 3 0 2 2 0 1 0 0 0 2 1 2 0 0 1 1 1 0 0 2 0 0 18 1 1896.0316 Q08426 Q08426 321 338 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 3 0.00049195 35.64 By MS/MS 1 0.98393 1.0994 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98393 1.0994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9138600 4278100 4860500 0 0 0 0 0 0 9138600 4278100 4860500 0 0 0 0 0 0 0 0 0 15904 2740 16579 82324 83410 83410 1 IPVIIER RVEDVRLIREQHPTKIPVIIERYKGEKQLP IREQHPTKIPVIIERYKGEKQLPVLDKTKF K I P E R Y 0 1 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 1 0 0 7 0 838.52764 H3BTL1;Q9GZQ8;A6NCE7;Q9H492 H3BTL1 31 37 MAP1LC3B;MAP1LC3B2;MAP1LC3A Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3A yes no 2 0.0113 80.462 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0557 0.94528 17.404 6 Median 0.99115 0.96882 20.894 2 0 Median 1.1089 0.93383 19.137 2 0 Median 1.1197 1.1312 NaN 1 0 Median 0.99529 0.779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104630000 50319000 54314000 11835000 5415100 6419500 34717000 17587000 17130000 33476000 15259000 18217000 24606000 12058000 12548000 0 0 0 0 0 0 15905 505 16580 82325;82326;82327;82328;82329;82330 83411;83412;83413;83414;83415;83416;83417;83418;83419;83420 83414 10 IPVINLEDGTR TRNIPSPGQLDPDTRIPVINLEDGTRLVGE PDTRIPVINLEDGTRLVGEDAPKNKDLVEW R I P T R L 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1225.6667 Q9P2D1 Q9P2D1 2569 2579 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.00011409 129.38 By MS/MS By MS/MS 1 2 0.9759 0.85382 6.8341 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73393 0.77964 NaN 1 0 Median 1.0005 0.87236 3.0379 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8235000 4737100 3497900 0 0 0 0 0 0 7186700 4234500 2952200 1048300 502620 545660 0 0 0 0 0 0 15906 4220 16581 82331;82332;82333 83421;83422;83423 83422 3 IPVMYQHHTDLNPIEVAIDEMSKK TILTAIHCFPYVKKRIPVMYQHHTDLNPIE DLNPIEVAIDEMSKKVAELRQLCSSAEVDM R I P K K V 1 0 1 2 0 1 2 0 2 3 1 2 2 0 2 1 1 0 1 2 0 0 24 1 2807.3986 A0A088AWN3;A0A0A0MSY4;Q9BZ29;H7BZ79;H0Y3S1 A0A088AWN3 1909 1932 DOCK9 Dedicator of cytokinesis protein 9 yes no 3 0.072791 2.5074 By MS/MS By matching 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1609700 1042000 567700 1438000 945030 492960 0 0 0 0 0 0 171700 96970 74734 0 0 0 0 0 0 15907 139 16582 82334;82335;82336 83424 83424 1 IPVSGPFLVK NAAPSDLESIFKDAKIPVSGPFLVKTGYAF FKDAKIPVSGPFLVKTGYAFVDCPDESWAL K I P V K T 0 0 0 0 0 0 0 1 0 1 1 1 0 1 2 1 0 0 0 2 0 0 10 0 1055.6379 O00425;F8WD15 O00425 27 36 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 0.017946 37.812 By MS/MS By matching By matching By matching 1 1 1 2 0.94946 0.81671 9.2053 5 Median 0.71787 0.68417 NaN 1 0 Median 0.94946 0.81671 NaN 1 0 Median 0.7279 0.77432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.008 0.85298 0.62835 2 0 Median 13556000 7385600 6170300 6371900 3748800 2623100 3071700 1526200 1545500 3434800 1767000 1667800 0 0 0 0 0 0 677510 343690 333820 15908 1462 16583 82337;82338;82339;82340;82341 83425;83426 83426 2 IPVTLNMK IRLPHVKYICPHAPRIPVTLNMKMVMPSWF ICPHAPRIPVTLNMKMVMPSWFDLMGLSPD R I P M K M 0 0 1 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 8 0 914.52592 O95372;Q5QPQ1;Q5QPQ3;Q5QPQ2;Q5QPN5;Q5QPN9 O95372 62 69 LYPLA2 Acyl-protein thioesterase 2 yes no 2 0.00052169 153.15 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0782 0.96885 48.829 4 Median 0.89313 0.82813 NaN 1 0 Median 1.1411 0.96457 NaN 1 0 Median 1.0188 0.97315 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.3653 2.4141 NaN 1 0 Median NaN NaN NaN 0 0 Median 30388000 14969000 15419000 22249000 11356000 10893000 2750200 1293300 1456900 3034100 1622800 1411300 0 0 0 2354400 696600 1657800 0 0 0 15909 1767 16584 82342;82343;82344;82345 83427;83428;83429;83430;83431 83427 5 IPWFQYPIIYDIR GVQQDTILAEGLHFRIPWFQYPIIYDIRAR FRIPWFQYPIIYDIRARPRKISSPTGSKDL R I P I R A 0 1 0 1 0 1 0 0 0 4 0 0 0 1 2 0 0 1 2 0 0 0 13 0 1722.9134 J3KPX7;Q99623;F5GY37;F5H0C5 J3KPX7 72 84 PHB2 Prohibitin-2 yes no 2 0.0031286 45.359 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1477 0.97003 47.822 5 Median NaN NaN NaN 0 0 Median 1.136 0.9627 1.0727 2 0 Median 0.84979 0.83717 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4 2.7455 NaN 1 0 Median 1.459 1.2862 NaN 1 0 Median 5239700 2560700 2679000 0 0 0 1719700 800460 919210 2984200 1591300 1392900 0 0 0 417430 125790 291640 118350 43117 75232 15910 1313 16585 82346;82347;82348;82349;82350 83432;83433;83434;83435 83435 4 IPWTAASSQLK ALRRSINQPVAFVRRIPWTAASSQLKEHFA FVRRIPWTAASSQLKEHFAQFGHVRRCILP R I P L K E 2 0 0 0 0 1 0 0 0 1 1 1 0 0 1 2 1 1 0 0 0 0 11 0 1200.6503 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJW7;H0YJ07;H0YJU7 Q9GZT3 26 36 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2 0.00016513 94.692 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0817 0.92486 11.345 4 Median 0.93834 0.84722 NaN 1 0 Median 1.26 1.033 NaN 1 0 Median 0.86555 0.83267 NaN 1 1 Median 1.2469 1.0096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114710000 53043000 61663000 39079000 19635000 19444000 66545000 28892000 37653000 6127400 3195100 2932300 2953700 1320400 1633300 0 0 0 0 0 0 15911 3914 16586 82351;82352;82353;82354 83436;83437;83438;83439;83440;83441 83437 6 IPYKDTFWK LLRERAEKMGQNLNRIPYKDTFWKGTTRTR GQNLNRIPYKDTFWKGTTRTRPRNGTLNKH R I P W K G 0 0 0 1 0 0 0 0 0 1 0 2 0 1 1 0 1 1 1 0 0 0 9 1 1196.623 Q13418;A0A0A0MTH3 Q13418 162 170 ILK Integrin-linked protein kinase yes no 3 0.0011787 63.397 By MS/MS By MS/MS 1 1 1.2187 1.2164 19.075 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3272 1.392 NaN 1 0 Median 1.119 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11280000 4301200 6978300 0 0 0 0 0 0 5737400 2185100 3552300 5542100 2116100 3426000 0 0 0 0 0 0 15912 190 16587 82355;82356 83442;83443 83443 2 IPYKPNYSLNLWSIMK YKHQLEETKKEKRTRIPYKPNYSLNLWSIM PYKPNYSLNLWSIMKNCIGKELSKIPMPVN R I P M K N 0 0 2 0 0 0 0 0 0 2 2 2 1 0 2 2 0 1 2 0 0 0 16 1 1966.0386 P22059;H0YCV6 P22059 409 424 OSBP Oxysterol-binding protein 1 yes no 3 0.00022606 43.297 By matching By MS/MS 1 1 0.77232 0.77475 1.8584 2 Median 0.73546 0.76464 NaN 1 0 Median 0.81102 0.785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5629200 3085300 2543900 599950 385840 214110 5029200 2699500 2329700 0 0 0 0 0 0 0 0 0 0 0 0 15913 2096 16588 82357;82358 83444;83445 83444 2 IPYLPITNFNQNWQDGK KQTPKQRLLGWIQNKIPYLPITNFNQNWQD YLPITNFNQNWQDGKALGALVDSCAPGLCP K I P G K A 0 0 3 1 0 2 0 1 0 2 1 1 0 1 2 0 1 1 1 0 0 0 17 0 2047.0163 O75369 O75369 153 169 FLNB Filamin-B yes yes 2;3 4.7247E-18 119.39 By MS/MS By MS/MS 4 1 0.8699 0.84389 9.6685 5 Median 0.92037 0.90667 8.9295 4 3 Median NaN NaN NaN 0 0 Median 0.71699 0.79873 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64265000 34436000 29829000 59608000 31415000 28193000 0 0 0 4657700 3021500 1636200 0 0 0 0 0 0 0 0 0 15914 1664 16589 82359;82360;82361;82362;82363 83446;83447;83448;83449;83450;83451 83447 6 IPYNAVLDLVNNK LEMLQEWLASLPLDRIPYNAVLDLVNNKMR DRIPYNAVLDLVNNKMRISGIFLTNHIKWV R I P N K M 1 0 3 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 1 2 0 0 13 0 1471.8035 Q6ZRP7;H0Y430 Q6ZRP7 389 401 QSOX2 Sulfhydryl oxidase 2;Sulfhydryl oxidase yes no 2 0.00087106 63.283 By matching By MS/MS 1 1 0.81744 0.75511 4.4128 2 Median 0.79789 0.77904 NaN 1 0 Median 0.83746 0.73191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12736000 6002300 6734100 2686700 1327900 1358800 10050000 4674400 5375400 0 0 0 0 0 0 0 0 0 0 0 0 15915 3198 16590 82364;82365 83452;83453 83453 2 IPYTTVLR YPTFLHLHGKTFDYKIPYTTVLRLFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K I P L R L 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 8 0 961.55967 Q08945;E9PMD4 Q08945 234 241 SSRP1 FACT complex subunit SSRP1 yes no 2 0.0033929 98.418 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 3 3 1.2801 1.1603 12.305 12 Median 1.0144 0.96347 NaN 1 0 Median 1.3199 1.1647 0.47944 2 0 Median 1.2467 1.2749 NaN 1 1 Median 1.3608 1.1576 3.3787 2 0 Median 1.1752 1.1847 13.564 3 0 Median 1.2706 1.0193 8.6971 3 0 Median 78118000 35000000 43118000 6737600 3538400 3199200 2235300 889260 1346000 7805000 3099800 4705200 2921800 1220900 1700900 39392000 18367000 21025000 19026000 7884700 11142000 15916 2743 16591 82366;82367;82368;82369;82370;82371;82372;82373;82374;82375;82376;82377 83454;83455;83456;83457;83458;83459;83460;83461;83462;83463;83464 83457 11 IQAAASTPTNATAASDANTGDR SNPPLATILIPPHARIQAAASTPTNATAAS PTNATAASDANTGDRGQTNNAASASASNST R I Q D R G 7 1 2 2 0 1 0 1 0 1 0 0 0 0 1 2 4 0 0 0 0 0 22 0 2102.9829 P49841 P49841 384 405 GSK3B Glycogen synthase kinase-3 beta yes yes 2 0.040597 19.075 By MS/MS 1 0.69694 0.69557 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69694 0.69557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1420700 697020 723690 0 0 0 0 0 0 1420700 697020 723690 0 0 0 0 0 0 0 0 0 15917 2402 16592 82378 83465;83466 83466 2 IQAEFEK DRVKPLQDQNELFGKIQAEFEKKWENGTFP DQNELFGKIQAEFEKKWENGTFPGWPKETS K I Q E K K 1 0 0 0 0 1 2 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 863.43888 Q12874 Q12874 213 219 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.015495 71.342 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1.0325 0.94279 14.663 7 Median 1.1969 1.151 NaN 1 0 Median 1.1115 0.94279 NaN 1 0 Median 0.96502 0.97494 NaN 1 0 Median 1.0126 0.87355 3.2144 2 0 Median 1.1975 1.1844 NaN 1 0 Median 0.96811 0.80146 NaN 1 0 Median 19549000 9243800 10305000 3296600 1178200 2118400 5136100 2416700 2719400 4311300 2328100 1983200 1740600 810830 929740 1996200 963620 1032600 3067800 1546300 1521500 15918 2767 16593 82379;82380;82381;82382;82383;82384;82385 83467;83468;83469;83470;83471;83472 83472 6 IQAEISAHELTLEELRR TDRIDAFQVPQEAQKIQAEISAHELTLEEL AEISAHELTLEELRRNMRSQPLTSPESRTA K I Q R R N 2 2 0 0 0 1 4 0 1 2 3 0 0 0 0 1 1 0 0 0 0 0 17 1 2007.0749 P46939 P46939 1380 1396 UTRN Utrophin yes yes 3;4 0.00065685 34.909 By MS/MS 3 1.0411 1.1313 26.362 3 Plateau 1.0411 1.1313 26.362 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13237000 6810100 6427200 13237000 6810100 6427200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15919 2349 16594 82386;82387;82388 83473;83474;83475;83476 83473 4 IQAEVEAQLAR QEEEERKKREDDEKRIQAEVEAQLARQKEE DEKRIQAEVEAQLARQKEEESQQQAVLEQE R I Q A R Q 3 1 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1226.6619 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;Q5JVM0 A0A0A0MRM8 981 991 MYO6 Unconventional myosin-VI yes no 2 0.0012834 80.688 By MS/MS By MS/MS 1 2 1.7941 1.5 NaN 1 Median NaN NaN NaN 0 0 Median 1.7941 1.5 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10845000 3773700 7071400 0 0 0 10845000 3773700 7071400 0 0 0 0 0 0 0 0 0 0 0 0 15920 164 16595 82389;82390;82391 83477;83478;83479 83477 3 IQAGDPVAR ELLARYKLRENQLPRIQAGDPVARYFGIKR ENQLPRIQAGDPVARYFGIKRGQVVKIIRP R I Q A R Y 2 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 925.49813 A0A087WWX0;A0A087WVZ9;A0A0A0MQR7;P19388 A0A087WWX0 97 105 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes no 2 0.0022552 73.26 By MS/MS By MS/MS By MS/MS 1 1 1 0.86364 0.82927 5.2151 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86364 0.82927 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84475 0.82883 NaN 1 0 Median 1.1197 0.90742 NaN 1 0 Median 9345600 5113900 4231700 0 0 0 0 0 0 6911100 3845500 3065700 0 0 0 1826900 982660 844240 607560 285750 321810 15921 47 16596 82392;82393;82394 83480;83481;83482 83480 3 IQAGEGETAVLNQLQEK NISLLEKEREDLYAKIQAGEGETAVLNQLQ AGEGETAVLNQLQEKNHTLQEQVTQLTEKL K I Q E K N 2 0 1 0 0 3 3 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 17 0 1826.9374 Q15075 Q15075 553 569 EEA1 Early endosome antigen 1 yes yes 2;3 2.1129E-13 115.57 By MS/MS 2 0.95994 0.92317 5.1934 2 Median 0.95994 0.92317 5.1934 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30775000 15390000 15385000 30775000 15390000 15385000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15922 2926 16597 82395;82396 83483;83484;83485 83484 3 IQAGEIGEMK QTFDRRSRVLPHPNRIQAGEIGEMKDGVPE PHPNRIQAGEIGEMKDGVPEGAQLQGPVHR R I Q M K D 1 0 0 0 0 1 2 2 0 2 0 1 1 0 0 0 0 0 0 0 0 0 10 0 1074.5379 P16989 P16989 259 268 YBX3 Y-box-binding protein 3 yes yes 2 0.019982 37.191 By MS/MS 2 0.69837 0.66394 25.495 2 Median 0.69837 0.66394 25.495 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5309200 2975500 2333600 5309200 2975500 2333600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15923 2033 16598 82397;82398 83486 83486 1 IQAGEIGEMKDGVPEGAQLQGPVHR QTFDRRSRVLPHPNRIQAGEIGEMKDGVPE DGVPEGAQLQGPVHRNPTYRPRYRSRGPPR R I Q H R N 2 1 0 1 0 3 3 5 1 2 1 1 1 0 2 0 0 0 0 2 0 0 25 1 2615.3126 P16989 P16989 259 283 YBX3 Y-box-binding protein 3 yes yes 4 0.021076 14.064 By MS/MS 1 0.65738 0.65558 NaN 1 Median 0.65738 0.65558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9207600 6106700 3101000 9207600 6106700 3101000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15924 2033 16599 82399 83487 83487 1 IQAGEVSQPSKEQLEK NLKKKLRQVEELQQRIQAGEVSQPSKEQLE QAGEVSQPSKEQLEKLARRRALEEELEDLE R I Q E K L 1 0 0 0 0 3 3 1 0 1 1 2 0 0 1 2 0 0 0 1 0 0 16 1 1769.9159 Q9BRP8 Q9BRP8 171 186 WIBG Partner of Y14 and mago yes yes 3 0.067238 10.057 By MS/MS By MS/MS By matching 1 1 1 1.0396 0.93539 10.439 3 Median 0.84689 0.82533 NaN 1 0 Median 1.1073 1.0154 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0396 0.93539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5629100 2781200 2847900 3223100 1667900 1555100 968880 492020 476860 0 0 0 1437200 621260 815910 0 0 0 0 0 0 15925 3799 16600 82400;82401;82402 83488;83489;83490 83489 3 IQAIAWAR VLVPGGFGVRGTEGKIQAIAWARNQKKPFL VRGTEGKIQAIAWARNQKKPFLGVCLGMQL K I Q A R N 3 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 8 0 927.52904 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6 P17812 382 389 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.002346 114.19 By MS/MS By MS/MS By MS/MS 1 2 1 1.2876 1.2805 13.379 4 Median 1.3132 1.238 NaN 1 0 Median 1.456 1.2694 22.661 2 0 Median 1.2624 1.3244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66678000 28552000 38126000 29264000 12855000 16409000 32478000 13735000 18744000 4935400 1961900 2973500 0 0 0 0 0 0 0 0 0 15926 2046 16601 82403;82404;82405;82406 83491;83492;83493;83494 83492 4 IQALAEETAQNLK QQSDGDRDLQEHRQRIQALAEETAQNLKRN QRIQALAEETAQNLKRNVYQNYRQFIETAR R I Q L K R 3 0 1 0 0 2 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1427.762 Q8IYI6 Q8IYI6 48 60 EXOC8 Exocyst complex component 8 yes yes 2 0.00013179 83.862 By matching By MS/MS By matching 1 1 1 1.0036 0.89567 2.0947 3 Median NaN NaN NaN 0 0 Median 1.0036 0.89567 NaN 1 0 Median 0.86263 0.91705 NaN 1 0 Median 1.013 0.87952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6674400 3429600 3244800 0 0 0 1212400 495520 716870 3861500 2173900 1687600 1600500 760190 840340 0 0 0 0 0 0 15927 3343 16602 82407;82408;82409 83495 83495 1 IQALAEETAQNLKR QQSDGDRDLQEHRQRIQALAEETAQNLKRN RIQALAEETAQNLKRNVYQNYRQFIETARE R I Q K R N 3 1 1 0 0 2 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 14 1 1583.8631 Q8IYI6 Q8IYI6 48 61 EXOC8 Exocyst complex component 8 yes yes 3 5.3206E-06 98.337 By MS/MS By MS/MS 1 1 1.0435 1.0507 37.257 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75977 0.80737 NaN 1 1 Median 1.4332 1.3674 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13800000 7457100 6342500 0 0 0 0 0 0 12679000 6921600 5757800 1120200 535580 584640 0 0 0 0 0 0 15928 3343 16603 82410;82411 83496;83497 83496 2 IQALESNLENLLTR QNMDLLEKLQVAHTKIQALESNLENLLTRE KIQALESNLENLLTRETKMKSLIRTLEQEK K I Q T R E 1 1 2 0 0 1 2 0 0 1 4 0 0 0 0 1 1 0 0 0 0 0 14 0 1612.8784 O60343;A0A3B3IRT3 O60343 1227 1240 TBC1D4 TBC1 domain family member 4 yes no 2 1.2581E-05 88.441 By MS/MS By MS/MS 2 1 1.0767 1.0873 13.201 3 Median 0.96955 0.97124 15.964 2 0 Median 1.2641 1.0935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4529800 2235000 2294800 3095500 1626600 1468900 1434300 608490 825830 0 0 0 0 0 0 0 0 0 0 0 0 15929 416 16604 82412;82413;82414 83498;83499 83499 2 IQALGLGEDWNVEK GFRRFKRSAQFFNYKIQALGLGEDWNVEKG KIQALGLGEDWNVEKGTSAGGGQKVRLLKK K I Q E K G 1 0 1 1 0 1 2 2 0 1 2 1 0 0 0 0 0 1 0 1 0 0 14 0 1570.7991 Q02809;Q5JXB8;Q5JXB7 Q02809 55 68 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 2 0.00087248 57.348 By MS/MS By matching By matching By matching 1 1 1 1 0.79834 0.73236 31.878 4 Median 0.84003 0.79642 NaN 1 0 Median 0.75872 0.67345 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1929 1.037 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55741 0.48437 NaN 1 0 Median 7360000 3788900 3571200 4406300 2209900 2196400 1634900 957650 677270 0 0 0 1191700 537430 654230 0 0 0 127150 83888 43266 15930 2702 16605 82415;82416;82417;82418 83500;83501 83500 2 IQALQQQADEAEDR ______________________________ KIQALQQQADEAEDRAQGLQRELDGERERR K I Q D R A 3 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7645 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UJB9;A0A590UK79 P67936 14 27 TPM4 Tropomyosin alpha-4 chain yes no 2 3.6747E-06 155.97 By MS/MS By MS/MS 1 1 0.84169 0.74771 19.221 2 Median 0.91777 0.85656 NaN 1 1 Median 0.77192 0.65269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12708000 6330000 6378400 7395100 3262200 4132900 5313300 3067800 2245500 0 0 0 0 0 0 0 0 0 0 0 0 15931 2629 16606 82419;82420 83502;83503;83504 83503 3 IQALQQQADEAEDRAQGLQR ______________________________ QQADEAEDRAQGLQRELDGERERREKAEGD K I Q Q R E 4 2 0 2 0 6 2 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 20 1 2267.1254 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UJB9;A0A590UK79 P67936 14 33 TPM4 Tropomyosin alpha-4 chain yes no 3 9.0942E-09 64.454 By MS/MS 1 0.92888 1 NaN 1 Median 0.92888 1 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8782100 3880600 4901500 8782100 3880600 4901500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15932 2629 16607 82421 83505;83506 83505 2 IQAQFGPLAQLSPQER QTQEYFIIQYQESLRIQAQFGPLAQLSPQE QAQFGPLAQLSPQERLSRETALQQKQVSLE R I Q E R L 2 1 0 0 0 4 1 1 0 1 2 0 0 1 2 1 0 0 0 0 0 0 16 0 1781.9424 P51692 P51692 182 197 STAT5B Signal transducer and activator of transcription 5B yes yes 2 0.0053926 46.592 By MS/MS 1 0.76155 0.74564 NaN 1 Median 0.76155 0.74564 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2685700 1412100 1273600 2685700 1412100 1273600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15933 2441 16608 82422 83507 83507 1 IQASTMAFK LINALYPEGQAPVKKIQASTMAFKQMEQIS QAPVKKIQASTMAFKQMEQISQFLQAAERY K I Q F K Q 2 0 0 0 0 1 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 9 0 995.511 P37802;X6RJP6 P37802 80 88 TAGLN2 Transgelin-2 yes no 2 0.00067245 105.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 2 3 1 1.2087 1.072 51.874 16 Median 1.0596 0.98329 91.953 5 0 Median 1.2062 1.0223 8.6193 5 0 Median 1.208 1.1329 0.42807 2 0 Median 1.2906 1.0695 8.0755 3 0 Median 1.609 1.6488 NaN 1 0 Median NaN NaN NaN 0 0 Median 415460000 187450000 228020000 251530000 119250000 132280000 77276000 32068000 45208000 73613000 30645000 42968000 8486500 3779600 4706900 4561700 1704100 2857600 0 0 0 15934 2269 16609;16610 82423;82424;82425;82426;82427;82428;82429;82430;82431;82432;82433;82434;82435;82436;82437;82438;82439 83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522;83523;83524;83525;83526;83527;83528;83529;83530;83531 83522 1016 24 IQAVIDSGVCR ACWALSYLSDGPNEKIQAVIDSGVCRRLVE PNEKIQAVIDSGVCRRLVELLMHNDYKVAS K I Q C R R 1 1 0 1 1 1 0 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 11 0 1216.6234 O60684;Q5TFJ7;O15131 O60684 287 297 KPNA6;KPNA5 Importin subunit alpha-7;Importin subunit alpha-6 no no 2 0.0054913 46.001 By MS/MS 1 1.3251 1.1307 NaN 1 Median NaN NaN NaN 0 0 Median 1.3251 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3442000 1363200 2078800 0 0 0 3442000 1363200 2078800 0 0 0 0 0 0 0 0 0 0 0 0 15935 1626;1524 16611 82440 83532 83532 1 IQAVLALSR KAMLIRLKDKIPNVRIQAVLALSRLQDPKD KIPNVRIQAVLALSRLQDPKDDECPVVNAY R I Q S R L 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 969.59712 Q9BPX3;D6RA93 Q9BPX3 160 168 NCAPG Condensin complex subunit 3 yes no 2 0.00061082 109.71 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 2 1.2896 1.1724 24.33 6 Median 1.3351 1.2882 NaN 1 0 Median 1.6813 1.4252 NaN 1 0 Median 0.94695 1.0279 43.095 2 0 Median 1.1639 0.98783 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3109 1.067 NaN 1 0 Median 25552000 11783000 13769000 8059000 3816800 4242300 4059200 1696500 2362700 6160600 3006400 3154100 6004800 2754400 3250400 0 0 0 1268300 508740 759510 15936 3778 16612 82441;82442;82443;82444;82445;82446;82447 83533;83534;83535;83536;83537;83538;83539 83533 7 IQDGLGELKK DKNEDLGRMYNLVSRIQDGLGELKKLLETH NLVSRIQDGLGELKKLLETHIHNQGLAAIE R I Q K K L 0 0 0 1 0 1 1 2 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1099.6237 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 305 314 CUL1 Cullin-1 yes no 2 0.06788 28.727 By MS/MS 1 1.1015 1.2607 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1015 1.2607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2340200 1128100 1212000 0 0 0 0 0 0 2340200 1128100 1212000 0 0 0 0 0 0 0 0 0 15937 256 16613 82448 83540 83540 1 IQDIVGILR EQDAQAPDLQRVHKRIQDIVGILRDFGAQR QRVHKRIQDIVGILRDFGAQREEGRSRSEY R I Q L R D 0 1 0 1 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1025.6233 P46087;F5H5X6;F5GYR3 P46087 243 251 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 2 0.00027719 138.83 By MS/MS By matching By MS/MS By MS/MS 2 2 3 1 1.1627 1.1246 18.674 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88173 0.92483 27.579 2 0 Median 1.4788 1.2729 23.551 2 0 Median 1.1192 1.1252 4.7503 3 0 Median 1.3764 1.1379 NaN 1 0 Median 50122000 23913000 26209000 0 0 0 0 0 0 7047500 3590000 3457500 679410 274380 405030 42036000 19892000 22144000 359160 156390 202770 15938 2338 16614 82449;82450;82451;82452;82453;82454;82455;82456 83541;83542;83543;83544;83545;83546;83547;83548;83549 83546 9 IQDKEGIPPDQQR LEVEPSDTIENVKAKIQDKEGIPPDQQRLI AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K I Q Q R L 0 1 0 2 0 3 1 1 0 2 0 1 0 0 2 0 0 0 0 0 0 0 13 1 1522.774 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422;F5GZ39;J3QSA3 P0CG48 30 42 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2;3 3.8806E-15 184.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 28 28 27 31 20 15 0.82448 0.79898 28.144 144 Median 0.74986 0.72418 14.158 28 0 Median 0.86101 0.77495 24.791 28 2 Median 0.65173 0.80531 16.749 27 0 Median 0.9628 0.94102 19.789 27 3 Median 0.82784 0.91951 46.58 19 0 Median 0.988 0.86537 37.044 15 1 Median 1152300000 569830000 582450000 34495000 18638000 15857000 122710000 63412000 59293000 106040000 62429000 43608000 676760000 307600000 369160000 185890000 105710000 80184000 26383000 12040000 14342000 15939 606 16615 82457;82458;82459;82460;82461;82462;82463;82464;82465;82466;82467;82468;82469;82470;82471;82472;82473;82474;82475;82476;82477;82478;82479;82480;82481;82482;82483;82484;82485;82486;82487;82488;82489;82490;82491;82492;82493;82494;82495;82496;82497;82498;82499;82500;82501;82502;82503;82504;82505;82506;82507;82508;82509;82510;82511;82512;82513;82514;82515;82516;82517;82518;82519;82520;82521;82522;82523;82524;82525;82526;82527;82528;82529;82530;82531;82532;82533;82534;82535;82536;82537;82538;82539;82540;82541;82542;82543;82544;82545;82546;82547;82548;82549;82550;82551;82552;82553;82554;82555;82556;82557;82558;82559;82560;82561;82562;82563;82564;82565;82566;82567;82568;82569;82570;82571;82572;82573;82574;82575;82576;82577;82578;82579;82580;82581;82582;82583;82584;82585;82586;82587;82588;82589;82590;82591;82592;82593;82594;82595;82596;82597;82598;82599;82600;82601;82602;82603;82604;82605 83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561;83562;83563;83564;83565;83566;83567;83568;83569;83570;83571;83572;83573;83574;83575;83576;83577;83578;83579;83580;83581;83582;83583;83584;83585;83586;83587;83588;83589;83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609;83610;83611;83612;83613;83614;83615;83616;83617;83618;83619;83620;83621;83622;83623;83624;83625;83626;83627;83628;83629;83630;83631;83632;83633;83634;83635;83636;83637;83638;83639;83640;83641;83642;83643;83644;83645;83646;83647;83648;83649;83650;83651;83652;83653;83654;83655;83656;83657;83658;83659;83660;83661;83662;83663;83664;83665;83666;83667;83668;83669;83670;83671;83672;83673;83674;83675;83676;83677;83678;83679;83680;83681;83682;83683;83684;83685;83686;83687;83688;83689;83690;83691;83692;83693;83694;83695;83696;83697;83698;83699;83700;83701;83702;83703;83704;83705;83706;83707;83708;83709;83710;83711;83712;83713;83714;83715;83716;83717;83718;83719;83720;83721;83722;83723;83724;83725;83726;83727;83728;83729;83730;83731;83732;83733;83734;83735;83736;83737;83738;83739;83740;83741;83742;83743;83744;83745;83746;83747;83748;83749;83750;83751;83752;83753;83754;83755;83756;83757;83758;83759;83760;83761;83762;83763;83764;83765;83766 83740 217 IQDLLAEGTITGVIDDR LASQVGLRTQDTINRIQDLLAEGTITGVID DLLAEGTITGVIDDRGKFIYITPEELAAVA R I Q D R G 1 1 0 3 0 1 1 2 0 3 2 0 0 0 0 0 2 0 0 1 0 0 17 0 1827.9578 Q96HY6 Q96HY6 249 265 DDRGK1 DDRGK domain-containing protein 1 yes yes 2 0.049709 21.23 By MS/MS 1 1.0936 1.139 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0936 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 863830 393810 470020 0 0 0 0 0 0 863830 393810 470020 0 0 0 0 0 0 0 0 0 15940 3672 16616 82606 83767 83767 1 IQDLSLLYQLFSR AILQKGLNNLLDENRIQDLSLLYQLFSRVR NRIQDLSLLYQLFSRVRGGVQVLLQQWIEY R I Q S R V 0 1 0 1 0 2 0 0 0 1 4 0 0 1 0 2 0 0 1 0 0 0 13 0 1594.8719 Q13620;K4DI93 Q13620 470 482 CUL4B Cullin-4B yes no 2 0.0011683 58.223 By MS/MS By matching 2 1 1.0033 0.98508 14.358 3 Median 0.93014 0.92147 9.4405 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3563 1.1484 NaN 1 0 Median 4025600 2036700 1989000 3944500 1999900 1944600 0 0 0 0 0 0 0 0 0 0 0 0 81138 36728 44410 15941 1358 16617 82607;82608;82609 83768;83769;83770;83771 83770 4 IQDLYTVLHK TAEERREIQEGLNTRIQDLYTVLHKTEDYL GLNTRIQDLYTVLHKTEDYLRQVLCKAAES R I Q H K T 0 0 0 1 0 1 0 0 1 1 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1228.6816 Q9Y487;F5H5F3;Q8TBM3 Q9Y487 270 279 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2;V-type proton ATPase subunit a yes no 3 0.046387 17.367 By MS/MS 1 1.2958 1.1305 NaN 1 Median NaN NaN NaN 0 0 Median 1.2958 1.1305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2906800 1266600 1640200 0 0 0 2906800 1266600 1640200 0 0 0 0 0 0 0 0 0 0 0 0 15942 4440 16618 82610 83772;83773 83772 2 IQDWYDK KVQALEEANNDLENKIQDWYDKKGPAAIQK ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K I Q D K K 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 7 0 966.4447 P35527;CON__P35527 P35527 185 191 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.024886 69.998 By MS/MS By MS/MS 3 5 0.11557 0.09778 63.942 7 Median NaN NaN NaN 0 0 Median 0.14928 0.12943 87.566 3 3 Median NaN NaN NaN 0 0 Median 0.10302 0.090285 54.399 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25025000 22586000 2439500 0 0 0 14294000 12512000 1782100 0 0 0 10731000 10074000 657340 0 0 0 0 0 0 + 15943 2242 16619 82611;82612;82613;82614;82615;82616;82617;82618 83774;83775;83776;83777;83778;83779;83780;83781 83779 8 IQDWYDKK KVQALEEANNDLENKIQDWYDKKGPAAIQK NNDLENKIQDWYDKKGPAAIQKNYSPYYNT K I Q K K G 0 0 0 2 0 1 0 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 8 1 1094.5397 P35527;CON__P35527 P35527 185 192 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.00014295 106.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 1 3 1 3 0.12122 0.11882 125.26 10 Median NaN NaN NaN 0 0 Median 0.11473 0.10712 95.878 4 3 Median NaN NaN NaN 0 0 Median 0.94811 0.96322 135.28 3 3 Plateau 0.081191 0.086582 NaN 1 1 Median 0.058815 0.0556 208.29 2 2 Median 46445000 39002000 7442300 0 0 0 16744000 14777000 1966500 1028700 1028700 0 11743000 8089200 3653500 2678500 2425000 253540 14251000 12682000 1568800 + 15944 2242 16620 82619;82620;82621;82622;82623;82624;82625;82626;82627;82628;82629;82630;82631;82632 83782;83783;83784;83785;83786;83787;83788;83789;83790;83791;83792;83793;83794 83794 13 IQDYDVSLDK SLILYEEVKPNLTERIQDYDVSLDKALDEL NLTERIQDYDVSLDKALDELMDGDIIVFQK R I Q D K A 0 0 0 3 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1194.5768 Q93009;H3BND8 Q93009 746 755 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00038273 111.61 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 0.93542 0.96591 64.948 7 Median 1.0867 1.0503 NaN 1 1 Median 1.1669 0.98756 NaN 1 1 Median 0.39733 0.41443 123.9 2 0 Median 1.097 0.96591 27.962 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78100000 38542000 39557000 13863000 6434500 7428700 11001000 4809500 6191800 36712000 19459000 17253000 16524000 7839500 8684100 0 0 0 0 0 0 15945 3574 16621 82633;82634;82635;82636;82637;82638;82639 83795;83796;83797;83798;83799;83800 83796 6 IQEAGTEVVK KVDFPQDQLTALTGRIQEAGTEVVKAKAGA ALTGRIQEAGTEVVKAKAGAGSATLSMAYA R I Q V K A 1 0 0 0 0 1 2 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 10 0 1072.5764 P40926;G3XAL0 P40926 230 239 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.00056965 115.71 By MS/MS By MS/MS By MS/MS 1 1 1 1.3678 1.1432 65.305 3 Median 0.40865 0.36955 NaN 1 1 Median 1.3721 1.1474 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3678 1.1432 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 177390000 103290000 74100000 101770000 72004000 29768000 55744000 22793000 32951000 0 0 0 19870000 8488400 11381000 0 0 0 0 0 0 15946 2292 16622 82640;82641;82642 83801;83802;83803;83804 83802 4 IQEAGTEVVKAK KVDFPQDQLTALTGRIQEAGTEVVKAKAGA TGRIQEAGTEVVKAKAGAGSATLSMAYAGA R I Q A K A 2 0 0 0 0 1 2 1 0 1 0 2 0 0 0 0 1 0 0 2 0 0 12 1 1271.7085 P40926;G3XAL0 P40926 230 241 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 3 0.031575 21.759 By MS/MS By matching 1 1 1.3202 1.2913 29.589 2 Median NaN NaN NaN 0 0 Median 1.7669 1.5918 NaN 1 0 Median 0.98644 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 753130 340100 413030 0 0 0 592500 265470 327030 160630 74626 86001 0 0 0 0 0 0 0 0 0 15947 2292 16623 82643;82644 83805 83805 1 IQEEGTEVELTGK LKRQEFEMKIEVEAKIQEEGTEVELTGKGA AKIQEEGTEVELTGKGATEITTTITKLSFV K I Q G K G 0 0 0 0 0 1 4 2 0 1 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1431.7093 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 326 338 yes yes 2 9.3374E-14 129.89 By MS/MS By MS/MS 3 3 0.17 0.15794 102.26 4 Median 0.21909 0.21835 NaN 1 1 Median 0.13191 0.11424 121.61 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22754000 20935000 1819600 11025000 10150000 875180 11730000 10785000 944460 0 0 0 0 0 0 0 0 0 0 0 0 + 15948 734 16624 82645;82646;82647;82648;82649;82650 83806;83807;83808;83809;83810;83811 83807 6 IQEELSALR EAALKEDFRRETAARIQEELSALRAEHQQD RETAARIQEELSALRAEHQQDSEDLFKKIV R I Q L R A 1 1 0 0 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1057.5768 Q9UH99 Q9UH99 355 363 SUN2 SUN domain-containing protein 2 yes yes 2 5.9621E-08 138.54 By MS/MS 1 1.7002 1.7118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7002 1.7118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36587000 10721000 25866000 0 0 0 0 0 0 36587000 10721000 25866000 0 0 0 0 0 0 0 0 0 15949 4271 16625 82651 83812 83812 1 IQEEMEKER QKKKQQEEEAERLRRIQEEMEKERKRREED AERLRRIQEEMEKERKRREEDEKRRRKEEE R I Q E R K 0 1 0 0 0 1 4 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 9 1 1190.5601 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1 A0A0A0MRM8 929 937 MYO6 Unconventional myosin-VI yes no 3 0.0060444 52.79 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 850440 0 850440 0 0 0 850440 0 850440 0 0 0 0 0 0 0 0 0 0 0 0 15950 164 16626 82652 83813 83813 1 IQEENVIPR KINGDWQRADAVWNKIQEENVIPREKTLRL DAVWNKIQEENVIPREKTLRLLAEILREGN K I Q P R E 0 1 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 0 1096.5877 P42704 P42704 981 989 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00017401 143.12 By MS/MS By MS/MS By MS/MS 1 2 2 1.1991 0.97604 14.471 5 Median 0.91191 0.87753 NaN 1 0 Median 1.0755 0.93177 10.887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3329 1.0993 16.82 2 0 Median 82304000 36132000 46173000 21888000 11129000 10759000 57964000 24083000 33881000 0 0 0 0 0 0 0 0 0 2452200 920030 1532200 15951 2315 16627 82653;82654;82655;82656;82657 83814;83815;83816;83817;83818;83819;83820 83815 7 IQEGVFDINNEANGIK VEEAFINTAKEIYEKIQEGVFDINNEANGI QEGVFDINNEANGIKIGPQHAATNATHAGN K I Q I K I 1 0 3 1 0 1 2 2 0 3 0 1 0 1 0 0 0 0 0 1 0 0 16 0 1759.8741 P61019 P61019 171 186 RAB2A Ras-related protein Rab-2A yes yes 2 5.2754E-10 105.65 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.1573 0.99359 18.573 6 Median 1.1981 1.1522 33.251 2 1 Median 1.133 0.97256 12.372 2 0 Median 1.1682 1.1101 NaN 1 1 Median 1.1464 0.93005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63280000 28388000 34893000 55965000 25293000 30672000 3406500 1572300 1834200 3715600 1439300 2276300 192910 82452 110460 0 0 0 0 0 0 15952 2537 16628 82658;82659;82660;82661;82662;82663 83821;83822;83823;83824 83822 4 IQEIIEQLDVTTSEYEK MLLKGKGDKAQIEKRIQEIIEQLDVTTSEY EIIEQLDVTTSEYEKEKLNERLAKLSDGVA R I Q E K E 0 0 0 1 0 2 4 0 0 3 1 1 0 0 0 1 2 0 1 1 0 0 17 0 2037.0154 P10809 P10809 371 387 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 4.418E-07 89.959 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1082 1.0156 17.486 4 Median 0.80154 0.77149 NaN 1 0 Median 1.2728 1.0783 NaN 1 0 Median 0.96493 0.95653 NaN 1 0 Median 1.307 1.1471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15275000 7408800 7866000 2922800 1641000 1281900 5429300 2352800 3076500 6823600 3378200 3445300 99210 36903 62308 0 0 0 0 0 0 15953 1947 16629 82664;82665;82666;82667 83825;83826;83827;83828 83826 4 IQEIIEQLDVTTSEYEKEK MLLKGKGDKAQIEKRIQEIIEQLDVTTSEY IEQLDVTTSEYEKEKLNERLAKLSDGVAVL R I Q E K L 0 0 0 1 0 2 5 0 0 3 1 2 0 0 0 1 2 0 1 1 0 0 19 1 2294.1529 P10809 P10809 371 389 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 3.1987E-19 137.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 1 1.1022 1.1388 34.811 9 Median 1.198 1.1143 14.984 2 0 Median 1.5515 1.4509 34.254 2 0 Median 1.1022 1.146 NaN 1 0 Median 1.2272 1.179 37.856 2 0 Median 0.53814 0.57437 NaN 1 1 Median 0.89363 0.79645 NaN 1 0 Median 246050000 110700000 135360000 162910000 71713000 91193000 33450000 14548000 18902000 37516000 17468000 20048000 637600 300410 337180 9895500 5862400 4033000 1647400 804010 843380 15954 1947 16630 82668;82669;82670;82671;82672;82673;82674;82675;82676 83829;83830;83831;83832;83833;83834;83835;83836;83837;83838;83839 83836 11 IQEIIEQLDVTTSEYEKEKLNER MLLKGKGDKAQIEKRIQEIIEQLDVTTSEY DVTTSEYEKEKLNERLAKLSDGVAVLKVGG R I Q E R L 0 1 1 1 0 2 6 0 0 3 2 2 0 0 0 1 2 0 1 1 0 0 23 2 2806.4236 P10809 P10809 371 393 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 4 4.3397E-12 59.678 By MS/MS 1 0.87326 0.94535 NaN 1 Median 0.87326 0.94535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20702000 9863100 10838000 20702000 9863100 10838000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15955 1947 16631 82677 83840;83841 83841 2 IQELAHELAAAK TLASVQELLIQQQQKIQELAHELAAAKATT QQKIQELAHELAAAKATTSTNWILESQNIN K I Q A K A 4 0 0 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1292.7089 O75381 O75381 184 195 PEX14 Peroxisomal membrane protein PEX14 yes yes 2 0.00062953 64.82 By MS/MS By MS/MS 1 1 1.2756 1.1402 8.3097 2 Median 1.1437 1.0751 NaN 1 0 Median 1.4226 1.2092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12397000 4712500 7685000 6145300 2280300 3864900 6252200 2432200 3820000 0 0 0 0 0 0 0 0 0 0 0 0 15956 1667 16632 82678;82679 83842;83843;83844 83842 3 IQELEDLLAK QLSNLQKESRACLERIQELEDLLAKEKDNS ACLERIQELEDLLAKEKDNSRRMLTDKERE R I Q A K E 1 0 0 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1170.6496 P20700;E9PBF6 P20700 321 330 LMNB1 Lamin-B1 yes no 2 0.00033827 87.308 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 5 4 0.89666 0.8904 27.838 16 Median NaN NaN NaN 0 0 Median 0.86168 0.75159 29.432 2 0 Median 0.92416 0.91272 9.6071 3 0 Plateau 1.8375 1.6018 36.988 2 0 Median 0.82882 0.85566 7.5241 5 0 Median 1.3734 1.1158 1.1756 4 0 Median 503950000 243150000 260800000 0 0 0 1790900 975610 815250 48305000 24362000 23944000 18671000 6471500 12200000 307880000 160330000 147550000 127310000 51011000 76296000 15957 2084 16633 82680;82681;82682;82683;82684;82685;82686;82687;82688;82689;82690;82691;82692;82693;82694;82695 83845;83846;83847;83848;83849;83850;83851;83852;83853;83854;83855;83856 83845 12 IQELEDLLAKEK QLSNLQKESRACLERIQELEDLLAKEKDNS LERIQELEDLLAKEKDNSRRMLTDKEREMA R I Q E K D 1 0 0 1 0 1 3 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1427.7872 P20700;E9PBF6 P20700 321 332 LMNB1 Lamin-B1 yes no 2;3 0.0010553 59.542 By MS/MS 3 0.91489 0.98354 20.982 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91489 0.98354 20.982 3 1 Median NaN NaN NaN 0 0 Median 23598000 11717000 11881000 0 0 0 0 0 0 0 0 0 0 0 0 23598000 11717000 11881000 0 0 0 15958 2084 16634 82696;82697;82698 83857;83858;83859;83860 83858 4 IQELENLPGSLAGDLR LQEREYRLQARIAHRIQELENLPGSLAGDL QELENLPGSLAGDLRTKATIELKALRLLNF R I Q L R T 1 1 1 1 0 1 2 2 0 1 4 0 0 0 1 1 0 0 0 0 0 0 16 0 1723.9105 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8YGP5 P51532 382 397 SMARCA4 Transcription activator BRG1 yes no 2 4.9727E-20 189.3 By matching By MS/MS By MS/MS 1 1 1 0.8151 0.88843 15.337 3 Median NaN NaN NaN 0 0 Median 0.80676 0.7178 NaN 1 0 Median 0.8151 0.88843 NaN 1 0 Median 1.0968 0.96657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22359000 12032000 10327000 0 0 0 154640 77238 77402 21125000 11458000 9666500 1079600 496580 583020 0 0 0 0 0 0 15959 366 16635 82699;82700;82701 83861;83862;83863;83864;83865 83862 5 IQELENLPGSLPPDLR LQEREYRLQARIAHRIQELENLPGSLPPDL QELENLPGSLPPDLRTKATVELKALRLLNF R I Q L R T 0 1 1 1 0 1 2 1 0 1 4 0 0 0 3 1 0 0 0 0 0 0 16 0 1789.9574 P51531;F6VDE0;A0A0U1RQZ9 P51531 358 373 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.00010663 69.979 By MS/MS 1 0.5207 0.57766 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5207 0.57766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3203700 2376000 827690 0 0 0 0 0 0 3203700 2376000 827690 0 0 0 0 0 0 0 0 0 15960 2433 16636 82702 83866;83867;83868 83866 3 IQELFHVEPGLQR DSLSRLTKVEELRRKIQELFHVEPGLQRLF RKIQELFHVEPGLQRLFYRGKQMEDGHTLF K I Q Q R L 0 1 0 0 0 2 2 1 1 1 2 0 0 1 1 0 0 0 0 1 0 0 13 0 1564.8362 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 45 57 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 0.00056647 72.006 By MS/MS 2 1.5163 1.6176 42.688 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5163 1.6176 42.688 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13683000 6703900 6979100 0 0 0 0 0 0 13683000 6703900 6979100 0 0 0 0 0 0 0 0 0 15961 20 16637 82703;82704 83869;83870 83869 2 IQELGDLYTPAPGR GSISQQNIRSEQRPRIQELGDLYTPAPGRA RIQELGDLYTPAPGRAESGPEKPHLNLWLE R I Q G R A 1 1 0 1 0 1 1 2 0 1 2 0 0 0 2 0 1 0 1 0 0 0 14 0 1528.7886 M0R2P8;M0R3A4;M0QYA2;Q9NWS0 M0R2P8 68 81 PIH1D1 PIH1 domain-containing protein 1 yes no 2 0.011177 33.409 By MS/MS 1 0.75047 0.62794 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75047 0.62794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1225200 625550 599700 0 0 0 0 0 0 0 0 0 1225200 625550 599700 0 0 0 0 0 0 15962 1414 16638 82705 83871 83871 1 IQELQASQEAR QLDLQHKKCQEANQKIQELQASQEARADHE ANQKIQELQASQEARADHEQQIKDLEQKLS K I Q A R A 2 1 0 0 0 3 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1271.647 Q9Y6D9 Q9Y6D9 208 218 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes yes 2 6.0641E-05 118.18 By MS/MS By MS/MS 1 2 1.2056 1.051 42.452 3 Median 0.52754 0.52086 NaN 1 1 Median 1.2429 1.0844 4.4174 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5795500 2918000 2877600 2133800 1180300 953530 3661700 1737700 1924000 0 0 0 0 0 0 0 0 0 0 0 0 15963 4490 16639 82706;82707;82708 83872;83873;83874 83873 3 IQENALPLMLAEPPQNLIAQSQSGTGK LLQGVYAMGFNRPSKIQENALPLMLAEPPQ PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA K I Q G K T 3 0 2 0 0 4 2 2 0 2 4 1 1 0 3 2 1 0 0 0 0 0 27 0 2847.48 H3BQK0;Q9UMR2;H3BN59;H3BMQ5 H3BQK0 123 149 DDX19B ATP-dependent RNA helicase DDX19B yes no 3 2.1521E-13 53.865 By MS/MS By matching 1 1 0.60119 0.57008 1.655 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55069 0.56344 NaN 1 0 Median 0.65631 0.57679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3364100 2033200 1330900 0 0 0 0 0 0 3202500 1946600 1256000 161620 86646 74970 0 0 0 0 0 0 15964 1225 16640 82709;82710 83875 83875 1 IQENALPMMLAEPPQNLIAQSQSGTGK LLQGVYAMGFNRPSKIQENALPMMLAEPPQ PPQNLIAQSQSGTGKTAAFVLAMLSRVEPS K I Q G K T 3 0 2 0 0 4 2 2 0 2 3 1 2 0 3 2 1 0 0 0 0 0 27 0 2865.4365 Q9NUU7;F6QDS0;I3L352 Q9NUU7 117 143 DDX19A ATP-dependent RNA helicase DDX19A yes no 3 0.0028406 29.346 By MS/MS By MS/MS By matching 1 1 1 0.83455 0.85826 12.327 3 Median 0.72051 0.71334 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83455 0.85826 NaN 1 1 Median 1.0257 0.9011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4500500 3008400 1492100 1508300 988540 519810 0 0 0 2841500 1958800 882690 150730 61129 89600 0 0 0 0 0 0 15965 4121 16641 82711;82712;82713 83876;83877 83877 2 IQEPNTFPAILR NNTLEGNCSSKSWQKIQEPNTFPAILRSMC WQKIQEPNTFPAILRSMCGYQTFFAGKYLN K I Q L R S 1 1 1 0 0 1 1 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 12 0 1397.7667 P15586;H7C3P4;F6S8M0;F5H4C6 P15586 126 137 GNS N-acetylglucosamine-6-sulfatase yes no 2 5.5654E-06 116.3 By MS/MS By matching By matching 1 3 1 0.75178 0.67662 23.241 5 Median 0.75178 0.70289 NaN 1 0 Median 0.78048 0.67662 31.129 3 0 Median 0.66208 0.63252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45087000 25214000 19872000 30544000 17785000 12760000 13482000 6814300 6667800 1060400 615520 444880 0 0 0 0 0 0 0 0 0 15966 2019 16642 82714;82715;82716;82717;82718 83878;83879 83878 2 IQEQVQQTLAR AGSSGRGGQTVKSLRIQEQVQQTLARKGRS KSLRIQEQVQQTLARKGRSSVGNGNLHRTS R I Q A R K 1 1 0 0 0 4 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1312.7099 Q99959;A0A087WXY2 Q99959 56 66 PKP2 Plakophilin-2 yes no 2 0.00144 81.338 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.4283 1.231 45.508 5 Median 0.93551 0.92069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1962 1.1958 NaN 1 0 Median 1.6806 1.3313 NaN 1 0 Median 3.0441 3.0551 NaN 1 0 Median 1.4283 1.231 NaN 1 1 Median 11920000 4381000 7539000 2331800 981950 1349800 0 0 0 1229900 588620 641270 566470 260680 305790 5325300 1376300 3948900 2466500 1173400 1293100 15967 3773 16643 82719;82720;82721;82722;82723 83880;83881;83882 83882 3 IQERDELAWK HLPPVRLAELHADLKIQERDELAWKKLKLD HADLKIQERDELAWKKLKLDGLDEDGEKEA K I Q W K K 1 1 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 10 1 1286.6619 P30533;A0A3B3IRQ7 P30533 85 94 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 3 0.025699 24.821 By matching By matching By MS/MS By matching 1 1 2 1 1.1019 1.0597 10.998 5 Median 1.1019 1.1803 NaN 1 0 Median 1.1003 1.0296 NaN 1 0 Median 1.1033 1.1836 15.645 2 0 Median 1.1715 1.0243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15074000 6949600 8124600 2587700 1278500 1309200 2121800 992460 1129300 8090800 3447500 4643200 2273900 1231000 1042900 0 0 0 0 0 0 15968 2196 16644 82724;82725;82726;82727;82728 83883;83884 83884 2 IQESHPELR SSMSVTSLEAELQAKIQESHPELRRVYFNK AELQAKIQESHPELRRVYFNKGL_______ K I Q L R R 0 1 0 0 0 1 2 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 9 0 1107.5673 Q9H9B4 Q9H9B4 306 314 SFXN1 Sideroflexin-1 yes yes 2 0.0053299 57.96 By MS/MS By MS/MS 1 1 1.1 0.9955 10.385 2 Median 0.95325 0.92502 NaN 1 0 Median 1.2694 1.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2957400 1329900 1627500 1220300 639250 581090 1737000 690620 1046400 0 0 0 0 0 0 0 0 0 0 0 0 15969 3998 16645 82729;82730 83885;83886;83887 83887 3 IQESHPELRR SSMSVTSLEAELQAKIQESHPELRRVYFNK ELQAKIQESHPELRRVYFNKGL________ K I Q R R V 0 2 0 0 0 1 2 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 10 1 1263.6684 Q9H9B4 Q9H9B4 306 315 SFXN1 Sideroflexin-1 yes yes 3 0.056784 12.616 By MS/MS By MS/MS 1 1 1.092 1.0871 17.425 2 Median 0.89269 0.96103 NaN 1 0 Median 1.3359 1.2296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2086900 924590 1162300 1264300 632920 631370 822630 291670 530960 0 0 0 0 0 0 0 0 0 0 0 0 15970 3998 16646 82731;82732 83888;83889;83890 83889 3 IQETQAELPR LDTNKSRFVDFQKVRIQETQAELPRGSIPR FQKVRIQETQAELPRGSIPRSLEVILRAEA R I Q P R G 1 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1183.6197 Q14566 Q14566 208 217 MCM6 DNA replication licensing factor MCM6 yes yes 2 1.3381E-10 176.79 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.81576 0.74339 13.425 4 Median 0.73125 0.70482 NaN 1 0 Median 1.0246 0.88567 NaN 1 0 Median 0.61161 0.64973 NaN 1 0 Median 0.91004 0.78407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33295000 17776000 15519000 9504200 5341000 4163300 12627000 5927500 6699900 9389800 5664900 3724900 1773400 842880 930560 0 0 0 0 0 0 15971 2881 16647 82733;82734;82735;82736 83891;83892;83893;83894;83895;83896;83897;83898;83899;83900 83899 10 IQEVADELQK TQGLIFVVDSNDRERIQEVADELQKMLLVD NDRERIQEVADELQKMLLVDELRDAVLLLF R I Q Q K M 1 0 0 1 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1171.6085 P18085;C9JPM4;C9JAK5 P18085 100 109 ARF4 ADP-ribosylation factor 4 yes no 2 2.1648E-05 146.27 By MS/MS By MS/MS By MS/MS 1 1 1 1.1523 0.98624 7.6422 3 Median 1.0507 0.98624 NaN 1 0 Median 1.1523 0.98333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4124 1.1241 NaN 1 0 Median 88880000 41394000 47486000 55815000 26485000 29331000 27370000 12508000 14862000 0 0 0 0 0 0 0 0 0 5695100 2402100 3293100 15972 2055 16648 82737;82738;82739 83901;83902;83903;83904;83905 83903 5 IQEWIPPSTPYK GTPEQYVPYSTTRKKIQEWIPPSTPYK___ RKKIQEWIPPSTPYK_______________ K I Q Y K - 0 0 0 0 0 1 1 0 0 2 0 1 0 0 3 1 1 1 1 0 0 0 12 0 1457.7555 Q9UI09 Q9UI09 134 145 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes yes 2 1.7424E-05 97.456 By MS/MS By MS/MS By matching 1 2 1 0.75957 0.77785 61.024 4 Median 0.65085 0.61374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55918 0.57824 75.449 2 1 Median 1.52 1.384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29967000 17153000 12814000 15924000 8887900 7035600 0 0 0 13036000 7900000 5136100 1007900 365460 642450 0 0 0 0 0 0 15973 4286 16649 82740;82741;82742;82743 83906;83907;83908 83906 3 IQEYEFTDDPIDVPR GPGPGRPKSKNLQPKIQEYEFTDDPIDVPR IQEYEFTDDPIDVPRIPKNDAPNRFWASVE K I Q P R I 0 1 0 3 0 1 2 0 0 2 0 0 0 1 2 0 1 0 1 1 0 0 15 0 1835.8578 O75528 O75528 130 144 TADA3 Transcriptional adapter 3 yes yes 2 0.00016426 76.655 By matching By MS/MS 1 1 0.53792 0.56292 43.32 2 Median 0.38101 0.4144 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75944 0.76468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8142900 5345700 2797200 5155300 3633800 1521500 0 0 0 2987600 1711900 1275700 0 0 0 0 0 0 0 0 0 15974 1681 16650 82744;82745 83909;83910 83909 2 IQEYLQSSGLAQR LQSSMAQLPMEELNRIQEYLQSSGLAQRHQ NRIQEYLQSSGLAQRHQRLYSLLDRFRLST R I Q Q R H 1 1 0 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1491.7682 P42858 P42858 2039 2051 HTT Huntingtin yes yes 2 7.9643E-07 120.09 By MS/MS By matching 1 1 1.9047 1.721 29.554 2 Median 1.4113 1.3965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5704 2.121 NaN 1 0 Median 7915200 3235700 4679400 7586000 3135000 4451000 0 0 0 0 0 0 0 0 0 0 0 0 329210 100780 228430 15975 2319 16651 82746;82747 83911;83912 83912 2 IQFFAIEIAR CSQGYTEENTIFAPRIQFFAIEIARNREGY IFAPRIQFFAIEIARNREGYNKAVYISVQD R I Q A R N 2 1 0 0 0 1 1 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 10 0 1206.6761 Q9BVG4 Q9BVG4 140 149 PBDC1 Protein PBDC1 yes yes 2 0.013464 40.002 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0941 0.99614 12.925 4 Median 1.1816 1.1382 NaN 1 0 Median 1 0.83163 NaN 1 0 Median 1.013 0.98379 NaN 1 0 Median 1.1969 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16860000 8070400 8789200 2617100 1216000 1401100 13642000 6547700 7094100 446570 232720 213850 154050 73908 80138 0 0 0 0 0 0 15976 3852 16652 82748;82749;82750;82751 83913;83914 83913 2 IQFKPDDGISPER NGEMIKKIQNDAGVRIQFKPDDGISPERAA VRIQFKPDDGISPERAAQVMGPPDRCQHAA R I Q E R A 0 1 0 2 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1500.7573 Q96I24 Q96I24 287 299 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 2.8324E-06 120.09 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 6 5 4 2 0.98265 0.89537 21.975 19 Median 1.0773 1.1663 NaN 1 0 Median 0.82648 0.75619 NaN 1 0 Median 0.81604 0.8946 19.606 6 1 Median 1.01 0.94773 6.4722 5 0 Median 0.9341 0.954 39.959 4 1 Median 0.99366 0.89677 2.3084 2 0 Median 311210000 158910000 152300000 17802000 9146900 8655000 4674400 2406000 2268500 175710000 91445000 84263000 54042000 25951000 28091000 48238000 25618000 22620000 10742000 4337700 6404700 15977 3673 16653 82752;82753;82754;82755;82756;82757;82758;82759;82760;82761;82762;82763;82764;82765;82766;82767;82768;82769;82770 83915;83916;83917;83918;83919;83920;83921;83922;83923;83924;83925;83926;83927;83928;83929;83930;83931;83932;83933;83934;83935;83936;83937;83938;83939 83929 25 IQFKPDDGTTPER NGEMIKKIQNDAGVRIQFKPDDGTTPERIA VRIQFKPDDGTTPERIAQITGPPDRCQHAA R I Q E R I 0 1 0 2 0 1 1 1 0 1 0 1 0 1 2 0 2 0 0 0 0 0 13 1 1502.7365 Q96AE4;E9PEB5 Q96AE4 309 321 FUBP1 Far upstream element-binding protein 1 yes no 2;3 1.3918E-14 185.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 8 2 2 0.886 0.881 8.9936 21 Median 0.80788 0.82768 4.1013 2 0 Median 0.83443 0.79795 22.173 2 1 Median 0.84473 0.89846 2.5655 5 0 Median 0.96011 0.88033 5.215 8 0 Median 0.78061 0.85853 8.9037 2 0 Median 0.98321 0.86958 23.281 2 0 Median 378640000 193970000 184670000 12326000 7123800 5202200 6610900 3281000 3330000 210600000 108530000 102070000 123530000 60582000 62953000 17244000 10256000 6987800 8332700 4202500 4130100 15978 3599 16654 82771;82772;82773;82774;82775;82776;82777;82778;82779;82780;82781;82782;82783;82784;82785;82786;82787;82788;82789;82790;82791 83940;83941;83942;83943;83944;83945;83946;83947;83948;83949;83950;83951;83952;83953;83954;83955;83956;83957;83958;83959;83960;83961;83962;83963;83964;83965;83966;83967;83968;83969 83957 30 IQFKQDDGTGPEK SGEMIKKIQNDAGVRIQFKQDDGTGPEKIA VRIQFKQDDGTGPEKIAHIMGPPDRCEHAA R I Q E K I 0 0 0 2 0 2 1 2 0 1 0 2 0 1 1 0 1 0 0 0 0 0 13 1 1461.71 Q92945;A0A087WTP3 Q92945 356 368 KHSRP Far upstream element-binding protein 2 yes no 2;3 0.0006482 50.292 By matching By MS/MS By MS/MS By matching 1 3 1 1 0.82476 0.89646 81.964 6 Median 0.85259 0.88146 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79783 0.91172 113.07 3 1 Median NaN NaN NaN 0 0 Median 1.1226 1.2576 NaN 1 0 Median 0.48794 0.43488 NaN 1 0 Median 25202000 15775000 9426800 2294600 890020 1404600 0 0 0 18745000 13046000 5698500 0 0 0 3289800 1402300 1887400 872520 436260 436260 15979 3568 16655 82792;82793;82794;82795;82796;82797 83970;83971;83972;83973;83974 83974 5 IQFTSLYHK LPKQCTFRFPSTAIKIQFTSLYHKEEAPAS PSTAIKIQFTSLYHKEEAPASPLRPLYPQI K I Q H K E 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 1 1 0 1 0 0 0 9 0 1135.6026 P85037;U3KQ26 P85037 199 207 FOXK1 Forkhead box protein K1 yes no 2 0.017009 42.109 By matching By MS/MS 1 1 1.125 1.0923 1.2309 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0147 1.1019 NaN 1 0 Median 1.2474 1.0829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4372000 2299000 2073000 0 0 0 0 0 0 2682200 1559600 1122600 1689800 739380 950380 0 0 0 0 0 0 15980 2669 16656 82798;82799 83975 83975 1 IQFVGACNPPTDPGR GFYRTSDQTWVKLERIQFVGACNPPTDPGR IQFVGACNPPTDPGRKPLSHRFLRHVPVVY R I Q G R K 1 1 1 1 1 1 0 2 0 1 0 0 0 1 3 0 1 0 0 1 0 0 15 0 1627.7777 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2706 2720 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 3.4219E-09 119.45 By MS/MS By MS/MS By matching 1 1 1 0.71481 0.62005 9.182 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59092 0.62005 NaN 1 0 Median 0.80575 0.70182 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71481 0.5866 NaN 1 0 Median 26053000 14939000 11113000 0 0 0 0 0 0 22567000 13154000 9412800 3244800 1659900 1584800 0 0 0 241170 125370 115810 15981 2865 16657 82800;82801;82802 83976;83977;83978;83979 83977 4 IQGGYENVPTIDIHMNQIGFER EHFGQWSLGNNKDNRIQGGYENVPTIDIHM VPTIDIHMNQIGFEREWHKFLLEYIAPMTE R I Q E R E 0 1 2 1 0 2 2 3 1 4 0 0 1 1 1 0 1 0 1 1 0 0 22 0 2530.2275 Q02809 Q02809 589 610 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 3 2.4417E-09 53.553 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.77717 0.74095 44.671 5 Median 0.77717 0.74095 NaN 1 0 Median 1.3326 1.1719 NaN 1 0 Median 0.61049 0.65049 NaN 1 1 Median 0.99782 0.84177 NaN 1 0 Median 0.33886 0.34759 NaN 1 0 Median NaN NaN NaN 0 0 Median 11568000 5992000 5575900 5880800 2973700 2907100 1463700 682380 781300 2831000 1555400 1275600 334890 152540 182350 1057600 627990 429570 0 0 0 15982 2702 16658 82803;82804;82805;82806;82807 83980;83981 83980 2 IQGLGLYAAK LRTEWKNNVYLARSRIQGLGLYAAKDLEKH LARSRIQGLGLYAAKDLEKHTMVIEYIGTI R I Q A K D 2 0 0 0 0 1 0 2 0 1 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1032.5968 O14686;H0YEF2 O14686 5406 5415 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 0.0022474 76.478 By MS/MS 1 0.85475 0.91327 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85475 0.91327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13961000 7755000 6205900 0 0 0 0 0 0 13961000 7755000 6205900 0 0 0 0 0 0 0 0 0 15983 1490 16659 82808 83982 83982 1 IQGLTVEQAEAVVR LRGNEIVLSAGSTPRIQGLTVEQAEAVVRL RIQGLTVEQAEAVVRLSCLPAFKDLIAKVQ R I Q V R L 2 1 0 0 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 3 0 0 14 0 1511.8308 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 3924 3937 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 6.5451E-08 149.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 1.2275 1.0885 17.147 11 Median 1.062 1.0111 3.0213 2 0 Median NaN NaN NaN 0 0 Median 1.0248 1.0968 0.64435 2 0 Median 1.2275 1.0695 1.6659 3 0 Median 1.5161 1.6022 4.542 2 1 Median 1.2917 1.0651 7.6913 2 0 Median 247470000 120380000 127090000 123880000 60847000 63028000 0 0 0 110070000 53688000 56385000 5573500 2456400 3117000 6055000 2584200 3470800 1895600 804080 1091500 15984 2865 16660 82809;82810;82811;82812;82813;82814;82815;82816;82817;82818;82819 83983;83984;83985;83986;83987;83988;83989;83990;83991;83992;83993;83994 83989 12 IQHAVQLATEPLEK LNETTDPDKKQMLERIQHAVQLATEPLEKA RIQHAVQLATEPLEKAVQSRLTGEEVNSCV R I Q E K A 2 0 0 0 0 2 2 0 1 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1575.8621 P49589;B4DKY1 P49589 155 168 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2;3 4.4691E-11 174.42 By MS/MS By MS/MS By MS/MS By MS/MS 5 1 2 2 0.95038 0.84794 29.625 10 Median 0.86535 0.81942 31.807 5 3 Median 1.1566 1.0105 NaN 1 0 Median 1.057 1.1155 10.539 2 1 Median 0.97861 0.84662 4.2489 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84681000 42890000 41791000 27817000 14553000 13265000 7869200 3836000 4033200 22074000 10955000 11119000 26921000 13546000 13375000 0 0 0 0 0 0 15985 2386 16661 82820;82821;82822;82823;82824;82825;82826;82827;82828;82829 83995;83996;83997;83998;83999;84000;84001;84002;84003;84004 84004 10 IQHILCTGNLCTK NSLPAKFKKLLVPGKIQHILCTGNLCTKES GKIQHILCTGNLCTKESYDYLKTLAGDVHI K I Q T K E 0 0 1 0 2 1 0 1 1 2 2 1 0 0 0 0 2 0 0 0 0 0 13 0 1556.7803 F8VXU5;Q9UBQ0 F8VXU5 63 75 VPS29 Vacuolar protein sorting-associated protein 29 yes no 3 0.00055141 49.31 By MS/MS 1 0.89888 0.77454 NaN 1 Median NaN NaN NaN 0 0 Median 0.89888 0.77454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2520200 1388900 1131300 0 0 0 2520200 1388900 1131300 0 0 0 0 0 0 0 0 0 0 0 0 15986 1073 16662 82830 84005 84005 1 IQHVVEAVR ILLQSYENVSNEAERIQHVVEAVRQEKQEL SNEAERIQHVVEAVRQEKQELYGKLRSTEA R I Q V R Q 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 3 0 0 9 0 1049.5982 Q14789;E7EU81 Q14789 1632 1640 GOLGB1 Golgin subfamily B member 1 yes no 2 0.018899 40.352 By matching By MS/MS 1 1 1.1043 1.0167 10.03 2 Median 0.95123 0.94705 NaN 1 0 Median 1.2819 1.0914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516400 1492800 2023600 832930 395280 437650 2683500 1097500 1586000 0 0 0 0 0 0 0 0 0 0 0 0 15987 2900 16663 82831;82832 84006 84006 1 IQHVVEAVRQEK ILLQSYENVSNEAERIQHVVEAVRQEKQEL AERIQHVVEAVRQEKQELYGKLRSTEANKK R I Q E K Q 1 1 0 0 0 2 2 0 1 1 0 1 0 0 0 0 0 0 0 3 0 0 12 1 1434.7943 Q14789;E7EU81 Q14789 1632 1643 GOLGB1 Golgin subfamily B member 1 yes no 3 0.010286 27.409 By MS/MS 1 0.8577 0.87216 NaN 1 Median 0.8577 0.87216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1410400 807020 603380 1410400 807020 603380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15988 2900 16664 82833 84007;84008 84008 2 IQIAPDSGGLPER GGEQISRIQQESGCKIQIAPDSGGLPERSC CKIQIAPDSGGLPERSCMLTGTPESVQSAK K I Q E R S 1 1 0 1 0 1 1 2 0 2 1 0 0 0 2 1 0 0 0 0 0 0 13 0 1351.7096 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 134 146 FUBP1 Far upstream element-binding protein 1 no no 2 7.118E-11 180.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 5 1 2 0.81542 0.70064 42.577 13 Median 0.9154 0.86587 NaN 1 0 Median 0.91184 0.78954 NaN 1 0 Median 0.82391 0.81494 35.805 3 1 Plateau 0.98639 0.85032 50.462 5 2 Median 0.46573 0.47249 NaN 1 1 Median 0.68813 0.57606 8.0533 2 0 Median 382590000 204730000 177860000 18098000 8918900 9179400 4739700 2315600 2424000 258400000 141660000 116740000 81394000 39181000 42213000 14546000 9295300 5250700 5415700 3357800 2057900 15989 3599;723 16665 82834;82835;82836;82837;82838;82839;82840;82841;82842;82843;82844;82845;82846;82847 84009;84010;84011;84012;84013;84014;84015;84016;84017;84018;84019;84020;84021;84022;84023;84024;84025;84026;84027;84028;84029;84030;84031;84032;84033;84034;84035;84036;84037 84028 29 IQIEAIPLALQGR LCEACDQLGWTKPTKIQIEAIPLALQGRDI TKIQIEAIPLALQGRDIIGLAETGSGKTGA K I Q G R D 2 1 0 0 0 2 1 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 13 0 1420.8402 Q9H0S4 Q9H0S4 50 62 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 5.9223E-05 86.624 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 5 3 0.9521 0.87792 16.227 12 Median 1.0893 1.0865 NaN 1 0 Median 0.94746 0.8043 NaN 1 0 Median 0.95037 0.92632 NaN 1 0 Median 0.92577 0.79793 NaN 1 0 Median 1.0112 1.0134 14.309 5 0 Median 0.91689 0.78832 4.9904 3 0 Plateau 69151000 34490000 34661000 2197900 1031800 1166100 4570300 2203700 2366600 33143000 16404000 16739000 9108500 4772700 4335800 10854000 5389700 5464300 9277700 4688200 4589500 15990 3928 16666 82848;82849;82850;82851;82852;82853;82854;82855;82856;82857;82858;82859 84038;84039;84040;84041;84042;84043;84044;84045;84046;84047;84048;84049;84050;84051 84047 14 IQIFPVDSAIDTISPLNQK LVTALLNFHTYTEQRIQIFPVDSAIDTISP PVDSAIDTISPLNQKFSQYLHENASYVRPL R I Q Q K F 1 0 1 2 0 2 0 0 0 4 1 1 0 1 2 2 1 0 0 1 0 0 19 0 2098.131 Q6ZMI0 Q6ZMI0 281 299 PPP1R21 Protein phosphatase 1 regulatory subunit 21 yes yes 2 0.043623 20.663 By MS/MS 1 0.6061 0.63079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6061 0.63079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 684500 400130 284370 0 0 0 0 0 0 684500 400130 284370 0 0 0 0 0 0 0 0 0 15991 3197 16667 82860 84052 84052 1 IQIGTQAIER EISNNNSTMVMTGMRIQIGTQAIERAPSYI MTGMRIQIGTQAIERAPSYIEIFGRTMQLN R I Q E R A 1 1 0 0 0 2 1 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1127.6299 Q5T4S7;A0A0A0MSW0 Q5T4S7 2354 2363 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 4.4322E-22 195.17 By MS/MS By matching 1 1 1.2209 1.1165 35.325 2 Median NaN NaN NaN 0 0 Median 1.0878 0.86971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3703 1.4333 NaN 1 0 Median NaN NaN NaN 0 0 Median 35991000 17183000 18808000 0 0 0 31151000 14794000 16357000 0 0 0 0 0 0 4839900 2388700 2451200 0 0 0 15992 3089 16668 82861;82862 84053 84053 1 IQILEGWK PQLTYSIGHTPADARIQILEGWKKRLENIW HTPADARIQILEGWKKRLENIWDETPLYFA R I Q W K K 0 0 0 0 0 1 1 1 0 2 1 1 0 0 0 0 0 1 0 0 0 0 8 0 985.55967 B4DLR8;H3BRK3;P15559;H3BNV2 B4DLR8 130 137 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 0.039331 37.021 By MS/MS By matching 1 2 1.5786 1.5426 55.098 3 Plateau 1.5786 1.5426 NaN 1 0 Median 0.69867 0.59785 9.0236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2921400 1231300 1690100 2526800 1004400 1522400 394560 226890 167670 0 0 0 0 0 0 0 0 0 0 0 0 15993 599 16669 82863;82864;82865 84054 84054 1 IQILEGWKK PQLTYSIGHTPADARIQILEGWKKRLENIW TPADARIQILEGWKKRLENIWDETPLYFAP R I Q K K R 0 0 0 0 0 1 1 1 0 2 1 2 0 0 0 0 0 1 0 0 0 0 9 1 1113.6546 B4DLR8;H3BRK3;P15559;H3BNV2 B4DLR8 130 138 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 0.0063554 60.59 By MS/MS By matching 1 2 1.7538 1.7073 43.492 3 Plateau 1.7538 1.7073 NaN 1 0 Median 1.1301 0.99152 42.594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4289600 1658000 2631600 2833300 1024600 1808700 1456300 633370 822910 0 0 0 0 0 0 0 0 0 0 0 0 15994 599 16670 82866;82867;82868 84055 84055 1 IQIMHAFSVAPFDQNLSIDGK KALLVSANQTLKELKIQIMHAFSVAPFDQN FSVAPFDQNLSIDGKILSDDCATLGTLGVI K I Q G K I 2 0 1 2 0 2 0 1 1 3 1 1 1 2 1 2 0 0 0 1 0 0 21 0 2330.1729 Q86UV5 Q86UV5 960 980 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 3 1.7005E-07 49.865 By MS/MS By matching 1 1 1.0594 1.0385 20.125 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83065 0.90072 NaN 1 0 Median 1.3511 1.1973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5064000 2732000 2331900 0 0 0 0 0 0 4978800 2690000 2288700 85192 41983 43209 0 0 0 0 0 0 15995 3281 16671 82869;82870 84056 84056 1 IQIPRPDDPSNQIK NGEKLQDLELKTATKIQIPRPDDPSNQIKI KIQIPRPDDPSNQIKITGTKEGIEKARHEV K I Q I K I 0 1 1 2 0 2 0 0 0 3 0 1 0 0 3 1 0 0 0 0 0 0 14 1 1619.8631 Q00341;A0A024R4E5;H0Y394;H7C0A4;C9JIZ1;C9J5E5 Q00341 184 197 HDLBP Vigilin yes no 2;3 0.0047546 48.004 By MS/MS By MS/MS 2 2 0.64914 0.63398 7.4127 3 Median 0.67238 0.67392 8.641 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64914 0.62667 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38653000 23212000 15441000 36060000 21489000 14571000 0 0 0 0 0 0 2593000 1723400 869560 0 0 0 0 0 0 15996 4 16672 82871;82872;82873;82874 84057;84058;84059;84060;84061 84057 5 IQIVGLTELQSLAVGPR FCNSKPHDELLQNNRIQIVGLTELQSLAVG IVGLTELQSLAVGPRVFQYGVKVVLQAMYL R I Q P R V 1 1 0 0 0 2 1 2 0 2 3 0 0 0 1 1 1 0 0 2 0 0 17 0 1793.0411 Q9BT22;K7EPU3 Q9BT22 83 99 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase yes no 2 0.0044031 31.639 By MS/MS 3 1.2297 1.0823 12.035 3 Median NaN NaN NaN 0 0 Median 1.2297 1.0823 12.035 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1973800 957320 1016500 0 0 0 1973800 957320 1016500 0 0 0 0 0 0 0 0 0 0 0 0 15997 3821 16673 82875;82876;82877 84062 84062 1 IQLFLAR LRRLSKSQNTVFCGRIQLFLARLFPLSEKS QNTVFCGRIQLFLARLFPLSEKSGLNLQSQ R I Q A R L 1 1 0 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 7 0 859.52797 A0A087WWS1;Q96FV9;A0A087WY84;J3KT14 A0A087WWS1 159 165 THOC1 THO complex subunit 1 yes no 2 0.0062425 93.885 By MS/MS By matching By matching By matching 1 1 1 2 0.96315 1.0096 36.234 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94503 0.95721 NaN 1 0 Median 1.1732 1.0096 NaN 1 0 Median 0.96315 1.0446 NaN 1 0 Median 0.81386 0.71774 62.193 2 0 Median 21165000 10722000 10443000 0 0 0 0 0 0 19416000 9918600 9497600 1119800 507810 611970 415950 172250 243700 212800 123030 89769 15998 62 16674 82878;82879;82880;82881;82882 84063;84064 84064 2 IQLIFER QAYIDFEMKIGDPARIQLIFERALVENCLV MKIGDPARIQLIFERALVENCLVPDLWIRY R I Q E R A 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 917.53345 A0A499FI31;Q15020 A0A499FI31 347 353 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.018478 62.717 By MS/MS By matching 3 1 0.99717 0.9866 21.266 4 Median 1.1206 1.0808 20.009 3 0 Plateau 1.3677 1.1688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13564000 6058600 7505600 10598000 4968400 5629200 2966600 1090200 1876400 0 0 0 0 0 0 0 0 0 0 0 0 15999 473 16675 82883;82884;82885;82886 84065;84066 84065 2 IQLINNMLDK RPFLAILGGAKVADKIQLINNMLDKVNEMI KVADKIQLINNMLDKVNEMIIGGGMAFTFL K I Q D K V 0 0 2 1 0 1 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 0 10 0 1200.6536 P00558 P00558 221 230 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.00041009 84.213 By MS/MS By MS/MS By MS/MS 1 2 1 1.6338 1.332 25.685 4 Linear 1.1794 1.0895 NaN 1 1 Median 1.1424 0.97213 16.825 2 0 Median 0.6147 0.63538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109780000 49480000 60303000 17757000 8133200 9623800 81236000 34692000 46543000 10790000 6654800 4135400 0 0 0 0 0 0 0 0 0 16000 1824 16676 82887;82888;82889;82890 84067;84068;84069;84070 84069 4 IQLLDLPGIIEGAK TLTTVPGVIRYKGAKIQLLDLPGIIEGAKD KIQLLDLPGIIEGAKDGKGRGRQVIAVART K I Q A K D 1 0 0 1 0 1 1 2 0 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1478.8708 Q9Y295 Q9Y295 113 126 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.00041385 70.977 By MS/MS By MS/MS By MS/MS 1 1 1 1.0222 0.96658 15.125 3 Median 1.0354 0.96658 NaN 1 0 Median 0.92472 0.78817 NaN 1 0 Median 1.0222 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27294000 13415000 13879000 7761300 3508700 4252600 10369000 5374300 4994800 9163500 4532000 4631500 0 0 0 0 0 0 0 0 0 16001 4382 16677 82891;82892;82893 84071;84072;84073;84074;84075 84075 5 IQLLEAK PIVPQKEPSPLLEKKIQLLEAKFAELEGGD PSPLLEKKIQLLEAKFAELEGGDDDIEEMG K I Q A K F 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 Q86U86;E7EVG2 Q86U86 1309 1315 PBRM1 Protein polybromo-1 yes no 2 0.008794 85.265 By MS/MS By matching By matching 1 1 1 1.4157 1.2873 23.625 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98005 1.0917 NaN 1 0 Median 1.4157 1.2873 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0201 1.7396 NaN 1 0 Median 6169700 2594700 3575100 0 0 0 0 0 0 4829000 2166700 2662200 812880 248970 563910 0 0 0 527900 178960 348940 16002 3273 16678 82894;82895;82896 84076;84077 84077 2 IQLLVFK AKLAGFLDLTEQEFRIQLLVFKHKMKNLVW DLTEQEFRIQLLVFKHKMKNLVWTSGISAL R I Q F K H 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 B0QY89;Q9Y262;B0QY90 B0QY89 531 537 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.02636 53.185 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 1.3378 1.2085 18.044 7 Median 1.1858 1.1565 14.352 2 0 Median 1.2538 1.0948 5.6466 2 0 Median 1.5681 1.6095 NaN 1 0 Median 1.388 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8539 1.5954 NaN 1 0 Median 13750000 5914900 7834900 5993000 2731500 3261400 4514300 2012300 2502000 2975400 1070700 1904800 143220 58162 85057 0 0 0 123780 42170 81610 16003 554 16679 82897;82898;82899;82900;82901;82902;82903 84078;84079;84080;84081 84079 4 IQLPSEK SDITVAQFMWIIRKRIQLPSEKAIFLFVDK FMWIIRKRIQLPSEKAIFLFVDKTVPQSSL R I Q E K A 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 7 0 813.45962 P60520;H3BSM5;H3BQ50 P60520 68 74 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2 0.0022148 108.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.099 0.90535 19.871 5 Median 1.1249 1.032 NaN 1 0 Median 1.099 0.90535 NaN 1 0 Median 0.96012 0.93963 33.557 2 0 Median 0.94967 0.77091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19921000 9695000 10226000 4070900 1837500 2233400 9173000 4536300 4636700 4675900 2336100 2339800 2001400 985010 1016400 0 0 0 0 0 0 16004 2526 16680 82904;82905;82906;82907;82908 84082;84083;84084;84085;84086 84086 5 IQLPVVSK LSTCLFGRGIECDIRIQLPVVSKQHCKIEI GIECDIRIQLPVVSKQHCKIEIHEQEAILH R I Q S K Q 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 8 0 882.55385 P46013 P46013 39 46 MKI67 Antigen KI-67 yes yes 2 0.0076735 66.073 By MS/MS By matching By matching By matching 2 1 3 3 1.0796 0.93425 17.153 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80666 0.88022 6.0668 2 0 Median 1.5963 1.3164 NaN 1 0 Median 1.2016 1.2424 23.972 3 0 Plateau 1.0963 0.93425 2.1453 3 0 Median 15623000 8040500 7582100 0 0 0 0 0 0 7802100 4110000 3692100 603230 287490 315740 5910900 3045000 2865900 1306300 598000 708340 16005 2335 16681 82909;82910;82911;82912;82913;82914;82915;82916;82917 84087 84087 1 IQLQIQETLQR GEFLHELEEKMEVARIQLQIQETLQRQYSH EVARIQLQIQETLQRQYSHHSSVQDAVSQL R I Q Q R Q 0 1 0 0 0 4 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1368.7725 O75694;E9PF10 O75694 1153 1163 NUP155 Nuclear pore complex protein Nup155 yes no 2 4.1398E-30 207.68 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.5088 1.3038 19.822 5 Median 0.86705 0.83843 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1861 1.3038 NaN 1 0 Median 1.5584 1.3279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5312 1.2936 1.7178 2 0 Median 27589000 13455000 14134000 4018800 1834900 2183900 0 0 0 21196000 10553000 10643000 1419400 614210 805210 0 0 0 954860 453040 501820 16006 1692 16682 82918;82919;82920;82921;82922 84088;84089;84090;84091;84092 84090 5 IQLQPTSIEK INAGMYILSPAVLQRIQLQPTSIEKEVFPI AVLQRIQLQPTSIEKEVFPIMAKEGQLYAM R I Q E K E 0 0 0 0 0 2 1 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1155.6499 Q9Y5P6 Q9Y5P6 186 195 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 2 0.025163 35.612 By MS/MS By matching 1 1 1.078 0.96445 26.64 2 Median 0.85941 0.79886 NaN 1 0 Median 1.3521 1.1644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13170000 6946800 6223500 10125000 5641400 4483900 3044900 1305400 1739500 0 0 0 0 0 0 0 0 0 0 0 0 16007 4465 16683 82923;82924 84093 84093 1 IQLSSLIAAFQVTR MADIEYRLSVGTNEKIQLSSLIAAFQVTRD KIQLSSLIAAFQVTRDLIVAEA________ K I Q T R D 2 1 0 0 0 2 0 0 0 2 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1545.8879 P40937 P40937 320 333 RFC5 Replication factor C subunit 5 yes yes 2 6.5451E-08 101.93 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.3072 1.1785 17.441 6 Median 1.1012 1.1235 NaN 1 0 Median 1.363 1.1785 5.4952 2 0 Median 1.3658 1.3516 33.714 2 0 Median NaN NaN NaN 0 0 Median 1.3113 1.3404 NaN 1 0 Median NaN NaN NaN 0 0 Median 8845200 3829900 5015300 1230500 569240 661250 5519000 2385500 3133500 1829100 765870 1063300 0 0 0 266570 109280 157290 0 0 0 16008 2293 16684 82925;82926;82927;82928;82929;82930 84094;84095;84096;84097;84098 84098 5 IQLVEEELDR AREQAEAEVASLNRRIQLVEEELDRAQERL SLNRRIQLVEEELDRAQERLATALQKLEEA R I Q D R A 0 1 0 1 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1242.6456 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 56 65 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 2 3.3901E-05 141.88 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 0.95839 0.85426 13.257 8 Median 0.94811 0.88727 NaN 1 0 Median 1.0905 0.91465 1.1091 2 0 Median 0.97724 0.94339 20.014 2 0 Median 0.89966 0.74146 10.562 2 0 Median NaN NaN NaN 0 0 Median 0.95886 0.82248 NaN 1 0 Median 107530000 49373000 58162000 18952000 8928800 10024000 28176000 12865000 15311000 55366000 25042000 30324000 4076900 2030900 2046100 0 0 0 963700 506500 457200 + 16009 63;1303;2629;1193;1249 16685 82931;82932;82933;82934;82935;82936;82937;82938 84099;84100;84101;84102;84103;84104;84105;84106;84107;84108;84109;84110 84100 12 IQLVEEELDRAQER AREQAEAEVASLNRRIQLVEEELDRAQERL RIQLVEEELDRAQERLATALQKLEEAEKAA R I Q E R L 1 2 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 14 1 1726.885 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 56 69 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 3 3.0168E-06 90.926 By MS/MS By MS/MS By matching By matching By matching 2 2 2 1 1 0.99374 1.012 12.109 8 Median 0.99374 1.066 9.1143 2 0 Median 1.1987 1.0598 2.4607 2 0 Median 0.82428 0.85749 0.27906 2 0 Median 1.098 1.0246 NaN 1 0 Median 0.73272 0.82345 NaN 1 0 Median NaN NaN NaN 0 0 Median 99964000 48042000 51922000 72196000 34535000 37661000 16320000 6845400 9474800 9169700 5372800 3796900 822250 403200 419050 1456000 885740 570270 0 0 0 + 16010 63;1303;2629;1193;1249 16686 82939;82940;82941;82942;82943;82944;82945;82946 84111;84112;84113 84112 3 IQMSNLMNQAR EYYEKKEKQIEQQKKIQMSNLMNQARLKVL QQKKIQMSNLMNQARLKVLRARDDLITDLL K I Q A R L 1 1 2 0 0 2 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 11 0 1304.6329 P36543;C9J8H1 P36543 70 80 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 2 6.1827E-07 167.33 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.2769 1.0672 15.767 7 Median 1.0257 0.96056 9.5179 2 0 Median 1.3053 1.0973 3.9341 2 0 Median 1.3974 1.3611 9.7956 2 0 Median NaN NaN NaN 0 0 Median 1.0399 1.043 NaN 1 1 Median NaN NaN NaN 0 0 Median 98244000 43606000 54638000 70515000 32068000 38447000 9980500 4363400 5617100 10114000 4253500 5860400 0 0 0 7634800 2921600 4713200 0 0 0 16011 2258 16687;16688 82947;82948;82949;82950;82951;82952;82953 84114;84115;84116;84117;84118;84119;84120;84121;84122;84123 84116 1008 10 IQNAGGSVMIQR FTQDHKPSNPLEKERIQNAGGSVMIQRVNG KERIQNAGGSVMIQRVNGSLAVSRALGDFD R I Q Q R V 1 1 1 0 0 2 0 2 0 2 0 0 1 0 0 1 0 0 0 1 0 0 12 0 1272.6609 P35813 P35813 175 186 PPM1A Protein phosphatase 1A no no 2 0.00016877 86.624 By MS/MS By MS/MS By matching 2 2 1 1.0729 1.0715 28.366 5 Median 1.02 1.0182 7.2136 2 0 Median 1.088 0.9428 24.274 2 0 Median 1.8031 1.717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28040000 12520000 15521000 19874000 9090800 10783000 6944800 3040100 3904700 1221600 388880 832680 0 0 0 0 0 0 0 0 0 16012 2251 16689 82954;82955;82956;82957;82958 84124;84125;84126;84127;84128 84126 5 IQNDAGVR SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD SGEMIKKIQNDAGVRIQFKQDDGTGPEKIA K I Q V R I 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 871.45118 Q96AE4;E9PEB5;Q92945;A0A087WTP3;M0R0I5;Q96I24 Q92945 348 355 FUBP1;KHSRP;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 2;Far upstream element-binding protein 3 no no 2 0.071363 30.185 By matching By MS/MS By matching 3 1 1 0.8389 0.8869 22.169 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0074 1.0602 29.612 3 0 Plateau 1.119 0.95724 NaN 1 0 Median 0.75623 0.79485 NaN 1 0 Median NaN NaN NaN 0 0 Median 3512300 1778700 1733600 0 0 0 0 0 0 2457800 1250800 1207000 675110 317680 357430 379340 210190 169150 0 0 0 16013 3568;3599;3673 16690 82959;82960;82961;82962;82963 84129;84130 84129 2 IQNGAQGIR SCSADEVQRFFSDCKIQNGAQGIRFIYTRE FFSDCKIQNGAQGIRFIYTREGRPSGEAFV K I Q I R F 1 1 1 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 955.51993 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;D6RDL0;D6RF17 P31943 36 44 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.00053672 116.54 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 5 2 1.1502 1.1066 8.635 11 Median 1.1354 1.1066 NaN 1 0 Median 1.1638 1.0057 NaN 1 0 Median 1.0477 1.0516 NaN 1 0 Median 1.4337 1.2624 NaN 1 0 Median 1.0595 1.0643 9.5148 5 0 Median 1.3508 1.1752 0.33705 2 0 Median 16221000 7466300 8754900 285360 149550 135820 1964400 867360 1097000 3990000 1898200 2091800 183120 75499 107620 8761200 4065800 4695300 1037100 409810 627310 16014 1136 16691 82964;82965;82966;82967;82968;82969;82970;82971;82972;82973;82974 84131;84132;84133;84134;84135 84131 5 IQNLEALLQK DLEQVLRQIGDKDQKIQNLEALLQKSKENI DKDQKIQNLEALLQKSKENISLLEKEREDL K I Q Q K S 1 0 1 0 0 2 1 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1168.6816 Q15075 Q15075 525 534 EEA1 Early endosome antigen 1 yes yes 2 0.0022568 60.91 By MS/MS By matching By matching By matching 1 2 1 1 1.11 1.0329 17.349 5 Median 1.11 1.0749 NaN 1 0 Median 1.0485 0.94302 12.882 2 0 Median 0.69076 0.72917 NaN 1 0 Median 1.277 1.0885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16436000 7578200 8858100 9698900 4405800 5293100 4835300 2325100 2510200 1577600 723530 854100 324480 123800 200680 0 0 0 0 0 0 16015 2926 16692 82975;82976;82977;82978;82979 84136;84137 84137 2 IQNPDLWNSYQAK FNQTCSHFRIEKIERIQNPDLWNSYQAKKK ERIQNPDLWNSYQAKKKTMDAKNGQTMNEK R I Q A K K 1 0 2 1 0 2 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 0 13 0 1575.7682 Q460N5 Q460N5 1651 1663 PARP14 Poly [ADP-ribose] polymerase 14 yes yes 2 0.0035312 59.542 By MS/MS 2 0.92056 1.026 15.164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92056 1.026 15.164 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7353900 3776600 3577400 0 0 0 0 0 0 7353900 3776600 3577400 0 0 0 0 0 0 0 0 0 16016 3017 16693 82980;82981 84138;84139 84138 2 IQNTGDYYDLYGGEK FTLSVRRNGAVTHIKIQNTGDYYDLYGGEK IQNTGDYYDLYGGEKFATLAELVQYYMEHH K I Q E K F 0 0 1 2 0 1 1 3 0 1 1 1 0 0 0 0 1 0 3 0 0 0 15 0 1734.7737 Q06124;A0A1W2PPU4 Q06124 56 70 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 3.2547E-09 98.803 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0352 0.92937 8.298 4 Median 1.0203 0.95683 NaN 1 0 Median 1.1945 1.0315 NaN 1 0 Median 0.80019 0.84922 NaN 1 1 Median 1.0504 0.9027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17398000 8355000 9042500 13017000 6030400 6986200 1460200 633830 826360 2307800 1394200 913580 612870 296520 316350 0 0 0 0 0 0 16017 2721 16694 82982;82983;82984;82985 84140;84141;84142 84141 3 IQNWHEEHR VLEQHKLTKEQWEERIQNWHEEHRGMLRED EQWEERIQNWHEEHRGMLREDSMMEYLKIA R I Q H R G 0 1 1 0 0 1 2 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 9 0 1247.5796 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 172 180 RDX Radixin yes no 2;3 0.0039705 49.418 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 3 1 1.1055 1.0249 11.038 12 Median 0.9136 0.9111 5.0948 2 0 Median 1.2321 1.0759 8.7859 4 0 Median 0.96813 1.0134 11.866 2 0 Median 1.2299 1.0502 10.655 3 0 Median NaN NaN NaN 0 0 Median 1.0154 0.86132 NaN 1 0 Median 10406000 4912100 5494100 1409400 713700 695710 5500500 2437500 3063000 2532600 1342000 1190600 869340 361440 507890 0 0 0 94383 57454 36929 16018 2235 16695 82986;82987;82988;82989;82990;82991;82992;82993;82994;82995;82996;82997 84143;84144;84145;84146;84147;84148;84149;84150;84151;84152;84153;84154 84145 12 IQPALQEK FFKRKIDFLTKQMEKIQPALQEKHAMKQAV LTKQMEKIQPALQEKHAMKQAVMEMMSQKI K I Q E K H 1 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 8 0 925.52328 Q99471;H3BPF6;H3BMQ1 Q99471 117 124 PFDN5 Prefoldin subunit 5 yes no 2 0.0095084 60.682 By MS/MS By MS/MS 1 1 0.90995 0.8215 3.1324 2 Median 0.89112 0.8399 NaN 1 0 Median 0.92917 0.8035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3558200 1802100 1756100 1682200 848080 834080 1876000 954000 922030 0 0 0 0 0 0 0 0 0 0 0 0 16019 3747 16696 82998;82999 84155;84156;84157;84158 84157 4 IQPDTIIQVWR KGYVVWQEVFDNKVKIQPDTIIQVWREDIP NKVKIQPDTIIQVWREDIPVNYMKELELVT K I Q W R E 0 1 0 1 0 2 0 0 0 3 0 0 0 0 1 0 1 1 0 1 0 0 11 0 1367.7561 H3BS10;H3BP20;P06865 H3BS10 383 393 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.011618 38.086 By MS/MS 1 1.3395 1.1441 NaN 1 Median NaN NaN NaN 0 0 Median 1.3395 1.1441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3260900 1286500 1974300 0 0 0 3260900 1286500 1974300 0 0 0 0 0 0 0 0 0 0 0 0 16020 1218 16697 83000 84159 84159 1 IQPDYPAER VAKVVPQQITHTSPRIQPDYPAERSSLIPI THTSPRIQPDYPAERSSLIPISGHRASPNP R I Q E R S 1 1 0 1 0 1 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 9 0 1087.5298 A0A2R8YDB8;H7BXF5;Q9H0E3 A0A2R8YDB8 419 427 SAP130 Histone deacetylase complex subunit SAP130 yes no 2 0.033467 35.438 By MS/MS 1 0.89092 0.96604 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89092 0.96604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1368800 716360 652470 0 0 0 0 0 0 1368800 716360 652470 0 0 0 0 0 0 0 0 0 16021 395 16698 83001 84160 84160 1 IQPEEKPVEVSPAVTK TGKAIQKGASKLRERIQPEEKPVEVSPAVT QPEEKPVEVSPAVTKGLYIAKQATGGAAKV R I Q T K G 1 0 0 0 0 1 3 0 0 1 0 2 0 0 3 1 1 0 0 3 0 0 16 1 1749.9513 Q8N0X7 Q8N0X7 460 475 SPG20 Spartin yes yes 3 0.019133 20.939 By MS/MS By matching By matching By matching 1 1 1 1 0.63518 0.63302 1.5803 4 Median 0.61612 0.63545 NaN 1 0 Median 0.65484 0.63324 NaN 1 0 Median 0.56388 0.63279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67925 0.61424 NaN 1 0 Median 13706000 8336300 5369400 4322700 2576000 1746700 1769600 1109600 660030 6443000 4026000 2416900 0 0 0 0 0 0 1170400 624630 545750 16022 3352 16699 83002;83003;83004;83005 84161;84162 84162 2 IQPFQNLTLHPASSSLHYSLQLFEGMK MLMVEWNDKGWGQPRIQPFQNLTLHPASSS SSSLHYSLQLFEGMKAFKGKDQQVRLFRPW R I Q M K A 1 0 1 0 0 3 1 1 2 1 5 1 1 2 2 4 1 0 1 0 0 0 27 0 3085.5695 O15382;B3KSI3;M0QZ10;M0QXF9;M0R2K7 O15382 80 106 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 4 1.446E-13 56.625 By MS/MS 2 1.1076 0.94444 10.242 2 Median NaN NaN NaN 0 0 Median 1.1076 0.94444 10.242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5467200 2201100 3266100 0 0 0 5467200 2201100 3266100 0 0 0 0 0 0 0 0 0 0 0 0 16023 1543 16700 83006;83007 84163 84163 1 IQPGNPNYTLSLK SLKLTNGIWILAELRIQPGNPNYTLSLKCR LRIQPGNPNYTLSLKCRAPEVSQYIYQVYD R I Q L K C 0 0 2 0 0 1 0 1 0 1 2 1 0 0 2 1 1 0 1 0 0 0 13 0 1443.7722 A0A087X253;P63010 A0A087X253 881 893 AP2B1 AP-2 complex subunit beta yes no 2 0.002075 67.08 By MS/MS By MS/MS 1 1 1.3714 1.3238 4.5582 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1843 1.2818 NaN 1 1 Median 1.588 1.3671 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27036000 11981000 15055000 0 0 0 0 0 0 23049000 10555000 12494000 3987200 1426700 2560500 0 0 0 0 0 0 16024 128 16701 83008;83009 84164;84165 84164 2 IQPPIAQLPIK QPNSAPAHLPLNPPRIQPPIAQLPIKTCTP NPPRIQPPIAQLPIKTCTPAPGTVSNANPQ R I Q I K T 1 0 0 0 0 2 0 0 0 3 1 1 0 0 3 0 0 0 0 0 0 0 11 0 1216.7543 Q8NEZ4;H7BY37 Q8NEZ4 3351 3361 KMT2C Histone-lysine N-methyltransferase 2C yes no 2 0.0079286 41.448 By MS/MS 1 0.50662 0.55293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50662 0.55293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378100 1630100 748020 0 0 0 0 0 0 2378100 1630100 748020 0 0 0 0 0 0 0 0 0 16025 3431 16702 83010 84166 84166 1 IQPQMDMVEK NDWQEDWVVFYARQRIQPQMDMVEKESGDR YARQRIQPQMDMVEKESGDREALQLWSALQ R I Q E K E 0 0 0 1 0 2 1 0 0 1 0 1 2 0 1 0 0 0 0 1 0 0 10 0 1217.5784 Q9HA64 Q9HA64 173 182 FN3KRP Ketosamine-3-kinase yes yes 2 0.0068526 62.823 By MS/MS By MS/MS By MS/MS 1 2 1 1.1212 0.94276 11.878 3 Plateau NaN NaN NaN 0 0 Median 1.108 0.93152 1.6961 2 2 Median 0.79372 0.7591 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19166000 9015200 10150000 0 0 0 15821000 7135900 8685600 3344100 1879300 1464800 0 0 0 0 0 0 0 0 0 16026 4005 16703 83011;83012;83013;83014 84167;84168;84169;84170 84169 4 IQPSGGTNINEALLR ATKTQVADAKNYIEKIQPSGGTNINEALLR IQPSGGTNINEALLRAIFILNEANNLGMLD K I Q L R A 1 1 2 0 0 1 1 2 0 2 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1581.8475 CON__Q9TRI1;Q5T985;P19823 CON__Q9TRI1 380 394 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 yes no 2 1.2603E-07 98.353 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9194600 9194600 0 9194600 9194600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 16027 793 16704 83015 84171 84171 1 IQQDADSVITVGR PSMWTRPQIKDFKEKIQQDADSVITVGRGE EKIQQDADSVITVGRGEVVTVRVPTHEEGS K I Q G R G 1 1 0 2 0 2 0 1 0 2 0 0 0 0 0 1 1 0 0 2 0 0 13 0 1400.726 Q9H3P7 Q9H3P7 387 399 ACBD3 Golgi resident protein GCP60 yes yes 2 9.0305E-07 124.67 By MS/MS By MS/MS By MS/MS 1 2 1 1.1156 1.0874 10.796 4 Linear 1.1478 1.0795 NaN 1 0 Median 1.0933 0.93805 12.92 2 1 Median NaN NaN NaN 0 0 Median 1.0843 0.90494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56431000 26156000 30275000 40547000 19061000 21486000 14306000 6337200 7968300 0 0 0 1578400 758340 820090 0 0 0 0 0 0 16028 3957 16705 83016;83017;83018;83019 84172;84173;84174;84175;84176;84177 84174 6 IQQEIAVQNPLVSER NCLAYDEAIMAQQDRIQQEIAVQNPLVSER IQQEIAVQNPLVSERLELSVLYKEYAEDDN R I Q E R L 1 1 1 0 0 3 2 0 0 2 1 0 0 0 1 1 0 0 0 2 0 0 15 0 1722.9264 J3KR44;Q96FW1;F5GYN4;F5GYJ8 J3KR44 37 51 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2;3 3.0972E-21 193.23 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 0.96682 0.83729 8.1141 9 Median 0.89762 0.83729 7.1906 3 0 Plateau 0.96739 0.8266 6.2157 3 0 Median 0.96507 0.94068 1.0101 2 0 Median 1.0135 0.85008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150020000 76746000 73275000 119400000 61612000 57793000 21125000 10054000 11072000 8737300 4699400 4037900 753530 380910 372620 0 0 0 0 0 0 16029 1322 16706 83020;83021;83022;83023;83024;83025;83026;83027;83028 84178;84179;84180;84181;84182;84183;84184;84185;84186;84187;84188;84189;84190 84179 13 IQQGALELLR YTYESKMAFLTRVAKIQQGALELLRSGVIV TRVAKIQQGALELLRSGVIVRLAQCQVYDM K I Q L R S 1 1 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1139.6663 Q92621;U3KPX2 Q92621 1566 1575 NUP205 Nuclear pore complex protein Nup205 yes no 2 1.4897E-05 149.94 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 3 1 1.1459 1.1778 8.1987 11 Median 0.93345 0.93675 NaN 1 0 Median 1.4098 1.1778 NaN 1 0 Median 1.1075 1.1848 8.6458 3 0 Median 1.3435 1.1795 1.2372 2 0 Median 1.1459 1.1905 3.7301 3 0 Plateau 1.4824 1.2388 NaN 1 0 Median 78683000 35209000 43474000 1913200 887100 1026100 1600500 365300 1235200 66036000 29941000 36095000 3286900 1397100 1889800 4630400 2112300 2518100 1216200 505900 710290 16030 3547 16707 83029;83030;83031;83032;83033;83034;83035;83036;83037;83038;83039 84191;84192;84193;84194;84195;84196;84197;84198;84199;84200 84193 10 IQQIAEGEK LIATVRRPAEAEAHRIQQIAEGEKVKQVLL EAEAHRIQQIAEGEKVKQVLLAQAEAEKIR R I Q E K V 1 0 0 0 0 2 2 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 9 0 1014.5346 J3QLD9;E7EMK3;Q14254;K7EKW9 J3QLD9 297 305 FLOT2 Flotillin-2 yes no 2 0.0038329 62.546 By matching By MS/MS By matching 2 1 1 1.3046 1.2323 36.435 4 Median 0.95768 0.95826 52.508 2 0 Median 1.2434 1.0933 NaN 1 0 Median 1.4063 1.471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2142100 1006400 1135700 752600 420630 331970 834360 395940 438420 555150 189820 365330 0 0 0 0 0 0 0 0 0 16031 856 16708 83040;83041;83042;83043 84201 84201 1 IQQIETTLNILDAK FSTVCEEKLADLSLRIQQIETTLNILDAKL RIQQIETTLNILDAKLSSIPGLDDVTVEVS R I Q A K L 1 0 1 1 0 2 1 0 0 3 2 1 0 0 0 0 2 0 0 0 0 0 14 0 1598.8879 F5GWI9;F5GXZ7;F5GZ97;Q9Y3C0;H0YGN0 F5GWI9 59 72 CCDC53 WASH complex subunit CCDC53 yes no 2 4.7613E-06 94.616 By MS/MS By matching 1 1 1.1099 0.99108 23.889 2 Median 0.89935 0.83704 NaN 1 0 Median 1.3698 1.1735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7699900 3791700 3908200 7240300 3567400 3672900 459640 224280 235360 0 0 0 0 0 0 0 0 0 0 0 0 16032 999 16709 83044;83045 84202;84203 84202 2 IQQIIEGK TKVDLAEKNVASPSRIQQIIEGKLFPMKAL NVASPSRIQQIIEGKLFPMKALGYFAVVTG R I Q G K L 0 0 0 0 0 2 1 1 0 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 927.53893 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3 A0A2R8Y3X5 376 383 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.042262 36.395 By MS/MS By matching 2 1 1.33 1.3372 38.261 3 Plateau 0.93949 0.91484 53.679 2 0 Median 1.1379 0.99434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2440500 1227200 1213400 1818500 903060 915420 622050 324110 297930 0 0 0 0 0 0 0 0 0 0 0 0 16033 357 16710 83046;83047;83048 84204 84204 1 IQQLAISGLK APKPEENPSLNIQFKIQQLAISGLKVNRLD NIQFKIQQLAISGLKVNRLDMYGEKYKPFK K I Q L K V 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1069.6495 Q9Y2T2;H0YBM0;E5RJ52;P53677 Q9Y2T2 379 388 AP3M1;AP3M2 AP-3 complex subunit mu-1;AP-3 complex subunit mu-2 yes no 2 0.00050373 118.5 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 4 3 1 1 1.3703 1.1648 27.619 13 Median 0.9784 0.94551 6.8175 2 0 Median 1.2317 1.0636 18.76 2 0 Median 1.1559 2.0393 43.055 4 0 Linear 1.3878 1.2451 18.013 3 0 Median 1.6953 1.6282 NaN 1 0 Median 1.3703 1.1648 NaN 1 0 Median 36792000 16665000 20127000 12909000 6777600 6131000 2309600 1039800 1269800 11832000 5071000 6761500 7353400 2958900 4394500 1590800 502740 1088100 797550 315400 482160 16034 4391 16711 83049;83050;83051;83052;83053;83054;83055;83056;83057;83058;83059;83060;83061 84205;84206;84207 84207 3 IQQLEDEVKR WLGVLLQQHMYVLRRIQQLEDEVKRVQNNN YVLRRIQQLEDEVKRVQNNNTLRKEEKIAI R I Q K R V 0 1 0 1 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1256.6725 J3KRA9;Q96Q15 J3KRA9 1871 1880 SMG1 Serine/threonine-protein kinase SMG1 yes no 3 0.029196 25.386 By MS/MS 1 2.6725 2.374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6725 2.374 NaN 1 0 Median 1969700 672430 1297300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1969700 672430 1297300 16035 1325 16712 83062 84208 84208 0 IQQLLNTLK DTADGVPVSSRVSTKIQQLLNTLKRPKRPP SRVSTKIQQLLNTLKRPKRPPLKEFFVDDS K I Q L K R 0 0 1 0 0 2 0 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1069.6495 Q9P265;A0A494C143;Q14689 Q9P265 277 285 DIP2B;DIP2A Disco-interacting protein 2 homolog B;Disco-interacting protein 2 homolog A yes no 2 0.0005398 116.25 By MS/MS By MS/MS 1 1 0.95557 0.92263 13.751 2 Median NaN NaN NaN 0 0 Median 1.1668 1.0168 NaN 1 0 Median 0.78255 0.83714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12861000 6672900 6188500 0 0 0 3347100 1316800 2030400 9514300 5356200 4158100 0 0 0 0 0 0 0 0 0 16036 4215 16713 83063;83064 84209;84210;84211 84210 3 IQQLNSNFSQLLEEK QLNDSLKEIHQKELRIQQLNSNFSQLLEEK IQQLNSNFSQLLEEKNTLSIQLCDTSQSLR R I Q E K N 0 0 2 0 0 3 2 0 0 1 3 1 0 1 0 2 0 0 0 0 0 0 15 0 1789.921 Q14789;H7C5I7 Q14789 3048 3062 GOLGB1 Golgin subfamily B member 1 yes no 2 1.6855E-14 129.34 By MS/MS 1 0.68901 0.69102 NaN 1 Median 0.68901 0.69102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15851000 7762300 8088800 15851000 7762300 8088800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16037 2900 16714 83065 84212 84212 1 IQQLPDHFGPGPVNVVLR VNKHGNFGPHLDPKRIQQLPDHFGPGPVNV LPDHFGPGPVNVVLRRIVQACVDCALETKT R I Q L R R 0 1 1 1 0 2 0 2 1 1 2 0 0 1 3 0 0 0 0 3 0 0 18 0 1985.0847 Q9UQR0;B4DRC2 Q9UQR0 376 393 SCML2 Sex comb on midleg-like protein 2 yes no 3 4.04E-07 83.54 By MS/MS By MS/MS By matching 3 2 1 0.60051 0.56306 13.055 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56482 0.56798 11.167 3 0 Median 0.71668 0.60646 14.508 2 0 Median NaN NaN NaN 0 0 Median 0.54892 0.48542 NaN 1 0 Median 50512000 30859000 19652000 0 0 0 0 0 0 48608000 29832000 18776000 1730100 935960 794110 0 0 0 173410 91083 82329 16038 4363 16715 83066;83067;83068;83069;83070;83071 84213;84214;84215;84216 84214 4 IQQLTALGAAQATAK KHAMKQAVMEMMSQKIQQLTALGAAQATAK IQQLTALGAAQATAKA______________ K I Q A K A 5 0 0 0 0 3 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 15 0 1483.8358 Q99471;H3BPF6;H3BMQ1 Q99471 139 153 PFDN5 Prefoldin subunit 5 yes no 2;3 1.8404E-09 138.75 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1.1696 1.0367 7.9507 9 Median 1.1678 1.0963 2.4521 2 0 Median 1.1568 0.99642 10.233 4 0 Median 1.0914 1.0628 7.6273 2 0 Median 1.2386 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159360000 73360000 85996000 130320000 60177000 70139000 16563000 7374200 9188800 11591000 5401700 6189800 885340 407140 478200 0 0 0 0 0 0 16039 3747 16716 83072;83073;83074;83075;83076;83077;83078;83079;83080 84217;84218;84219;84220;84221;84222;84223;84224;84225;84226;84227 84226 11 IQQLTALGAAQATAKA KHAMKQAVMEMMSQKIQQLTALGAAQATAK QQLTALGAAQATAKA_______________ K I Q K A - 6 0 0 0 0 3 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 16 1 1554.873 Q99471;H3BPF6;H3BMQ1 Q99471 139 154 PFDN5 Prefoldin subunit 5 yes no 2 0.0045747 85.845 By MS/MS 1 1.1996 1.1322 NaN 1 Median 1.1996 1.1322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12738000 5756800 6980900 12738000 5756800 6980900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16040 3747 16717 83081 84228 84228 0 IQQLTEEIGR EYRKLLSEKEVHTKRIQQLTEEIGRLKAEI VHTKRIQQLTEEIGRLKAEIARSNASLTNN R I Q G R L 0 1 0 0 0 2 2 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1185.6354 P12270 P12270 1368 1377 TPR Nucleoprotein TPR yes yes 2 3.5879E-05 141.2 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.93851 0.93192 11.917 5 Median 0.8199 0.79908 NaN 1 0 Median 1.0338 0.85443 18.262 2 1 Median 0.88817 0.96821 NaN 1 0 Median 1.0691 0.93192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102230000 53580000 48646000 15934000 9303200 6631000 29250000 14446000 14803000 49321000 26179000 23142000 7720900 3651100 4069800 0 0 0 0 0 0 16041 1978 16718 83082;83083;83084;83085;83086 84229;84230;84231;84232;84233 84230 4 IQQNTFTR PATEKDLAEDAPWKKIQQNTFTRWCNEHLK EDAPWKKIQQNTFTRWCNEHLKCVSKRIAN K I Q T R W 0 1 1 0 0 2 0 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 8 0 1006.5196 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 44 51 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 2.5242E-06 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1 1.0732 0.91856 20.078 10 Median 1.1998 1.2576 23.607 3 1 Median 1.0732 0.89151 3.2392 4 0 Median 0.93267 1.0363 NaN 1 1 Median 1.1199 0.9729 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80984 0.66108 NaN 1 0 Median 57520000 28132000 29388000 9702600 5282000 4420600 44731000 21265000 23465000 2509900 1319800 1190100 532940 235650 297290 0 0 0 43922 29210 14712 16042 2088;3120;1664;2871 16719 83087;83088;83089;83090;83091;83092;83093;83094;83095;83096;83097 84234;84235;84236;84237;84238;84239;84240;84241;84242;84243;84244;84245;84246 84236 13 IQQQFSDLK REKEEIEKYRMERPKIQQQFSDLKRKLAEV RMERPKIQQQFSDLKRKLAEVTEEEWLSIP K I Q L K R 0 0 0 1 0 3 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1105.5768 O94906 O94906 138 146 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0054678 71.379 By MS/MS 1 1.4318 1.2253 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4318 1.2253 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2803700 1054500 1749200 0 0 0 0 0 0 0 0 0 2803700 1054500 1749200 0 0 0 0 0 0 16043 1735 16720 83098 84247 84247 1 IQQQFSDLKR REKEEIEKYRMERPKIQQQFSDLKRKLAEV MERPKIQQQFSDLKRKLAEVTEEEWLSIPE K I Q K R K 0 1 0 1 0 3 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1261.6779 O94906 O94906 138 147 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 9.562E-05 77.662 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1 1.1483 9.9563 4 Median 0.98678 1.0221 NaN 1 0 Median 1.3829 1.3004 NaN 1 0 Median 1.032 1.1703 NaN 1 0 Median 1.1725 1.1267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19832000 9946800 9885000 1727700 839890 887840 3952300 2034400 1918000 8775100 4572400 4202700 5376700 2500100 2876500 0 0 0 0 0 0 16044 1735 16721 83099;83100;83101;83102;83103 84248;84249;84250;84251;84252;84253;84254;84255 84253 8 IQQQIIR KKLANSEPVGTQTAKIQQQIIRHKALEEDI PVGTQTAKIQQQIIRHKALEEDIENHATDV K I Q I R H 0 1 0 0 0 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 7 0 897.5396 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;A0A0A6YYJ5 H3BPE1 5484 5490 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.025507 69.432 By MS/MS By MS/MS 1 1 1.1315 1.0377 8.9454 2 Median 0.9759 0.97413 NaN 1 1 Median 1.3119 1.1055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5837200 2589600 3247700 962600 505970 456620 4874600 2083600 2791000 0 0 0 0 0 0 0 0 0 0 0 0 16045 1220 16722 83104;83105 84256;84257 84257 2 IQRPPEDSIQPYEK HRFLQEKGPSVDWGKIQRPPEDSIQPYEKI KIQRPPEDSIQPYEKIKARGLPDNISSVLN K I Q E K I 0 1 0 1 0 2 2 0 0 2 0 1 0 0 3 1 0 0 1 0 0 0 14 1 1698.8577 A0A087WYS1;E7EUC7;Q16851;C9JNZ1;C9JTZ5;C9JUW1;C9JWG0;C9JVG3;C9JQU9 A0A087WYS1 78 91 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 3 0.00032058 52.5 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.76701 0.70972 14.789 4 Median 0.94471 0.94265 NaN 1 0 Median 0.79379 0.72425 NaN 1 0 Median 0.62205 0.69085 NaN 1 0 Median 0.74114 0.69547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19292000 10287000 9005100 7142400 3595300 3547100 9925100 5417300 4507800 1381000 826840 554110 843650 447550 396100 0 0 0 0 0 0 16046 86 16723 83106;83107;83108;83109 84258;84259 84259 2 IQSALADIAQSQLK CLEDVVYRGDMLLEKIQSALADIAQSQLKT KIQSALADIAQSQLKTRSGEVSVTQAEVQF K I Q L K T 3 0 0 1 0 3 0 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 14 0 1484.8199 F5H872;Q13503 F5H872 118 131 MED21 Mediator of RNA polymerase II transcription subunit 21 yes no 2 8.6828E-08 99.215 By MS/MS By matching 1 1 1.1325 1.1469 11.603 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0999 1.0566 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.166 1.245 NaN 1 0 Median NaN NaN NaN 0 0 Median 7765700 3616900 4148800 0 0 0 0 0 0 7346300 3341600 4004700 0 0 0 419450 275320 144130 0 0 0 16047 1046 16724 83110;83111 84260;84261 84261 2 IQSALEEESVFAVTAVNASEK EMVTWRLLASLYRDRIQSALEEESVFAVTA EESVFAVTAVNASEKTVVEALFQRDSLVRQ R I Q E K T 4 0 1 0 0 1 4 0 0 1 1 1 0 1 0 3 1 0 0 3 0 0 21 0 2221.1114 P57740 P57740 230 250 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.0001207 37.954 By MS/MS 1 0.9163 0.98229 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9163 0.98229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2264000 1096700 1167300 0 0 0 0 0 0 2264000 1096700 1167300 0 0 0 0 0 0 0 0 0 16048 2518 16725 83112 84262;84263 84262 2 IQSDWAQALR ______________________________ AAPLRIQSDWAQALRKDEGEAWLSCHPPGK R I Q L R K 2 1 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 10 0 1186.6095 Q9BRP4 Q9BRP4 7 16 PAAF1 Proteasomal ATPase-associated factor 1 yes yes 2 0.063555 41.448 By MS/MS 1 0.84639 0.84281 NaN 1 Median 0.84639 0.84281 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10052000 4952600 5099400 10052000 4952600 5099400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16049 3798 16726 83113 84264 84264 1 IQSFDAETQQLLK ______________________________ YKIQSFDAETQQLLKTALKDPGAVDLEKVA K I Q L K T 1 0 0 1 0 3 1 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1519.7882 J3QLD1;J3KSB8;J3QRZ6;J3QLJ5;A9UHW6;J3QLN4;J3KSU6;J3QKW3;A0A3B3IU65 J3QLD1 11 23 MIF4GD MIF4G domain-containing protein yes no 2 0.012474 51.762 By MS/MS 1 1.1668 1.0971 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1668 1.0971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7360900 3537600 3823300 0 0 0 0 0 0 7360900 3537600 3823300 0 0 0 0 0 0 0 0 0 16050 552 16727 83114 84265 84265 1 IQSIAPSLQVITSK LAVPGTYDPNQPIIRIQSIAPSLQVITSKQ RIQSIAPSLQVITSKQRPRKLTLMGSNGHE R I Q S K Q 1 0 0 0 0 2 0 0 0 3 1 1 0 0 1 3 1 0 0 1 0 0 14 0 1483.861 P42345;B1AKP8 P42345 2153 2166 MTOR Serine/threonine-protein kinase mTOR yes no 2 0.00060938 69.451 By MS/MS 1 0.877 0.84683 NaN 1 Median 0.877 0.84683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7834800 3969000 3865700 7834800 3969000 3865700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16051 2310 16728 83115 84266 84266 1 IQSIYLER NAVSLFQVDGKTNPKIQSIYLERFPIFKAC DGKTNPKIQSIYLERFPIFKACFSANGEEV K I Q E R F 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1020.5604 Q9Y5J1 Q9Y5J1 288 295 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 8.4836E-09 133.55 By MS/MS By MS/MS By matching 2 2 3 0.94149 0.99092 29.957 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91504 0.96075 4.3721 2 1 Median NaN NaN NaN 0 0 Median 1.2102 1.2443 3.0787 2 1 Median 0.82418 0.67763 34.155 3 0 Median 26687000 12729000 13958000 0 0 0 0 0 0 7216400 3656900 3559500 0 0 0 18039000 8436700 9602500 1431900 635730 796200 16052 4458 16729 83116;83117;83118;83119;83120;83121;83122 84267;84268;84269 84268 3 IQSLLDIQEK LRIHQGEHFREVMKRIQSLLDIQEKEFEKF EVMKRIQSLLDIQEKEFEKFKFAIVMMGRH R I Q E K E 0 0 0 1 0 2 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1185.6605 Q93009 Q93009 1024 1033 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.008196 46.819 By matching By matching By MS/MS 1 2 2 1.0464 1.1351 26.629 5 Median 1.4655 1.4224 NaN 1 0 Median 1.1125 0.94614 39.335 2 0 Median 1.0049 1.0383 12.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15388000 6812900 8575500 1430300 391620 1038700 6349000 2558300 3790800 7609100 3863000 3746100 0 0 0 0 0 0 0 0 0 16053 3574 16730 83123;83124;83125;83126;83127 84270 84270 1 IQSLPDLSR KLARVSLVRKELRSRIQSLPDLSRLPNVTG KELRSRIQSLPDLSRLPNVTGSHMHLPFAG R I Q S R L 0 1 0 1 0 1 0 0 0 1 2 0 0 0 1 2 0 0 0 0 0 0 9 0 1027.5662 Q96P16;K7ER50 Q96P16 283 291 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 0.0021327 87.639 By MS/MS 1 0.83433 0.85283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83433 0.85283 NaN 1 1 Median NaN NaN NaN 0 0 Median 8304000 4998900 3305100 0 0 0 0 0 0 0 0 0 0 0 0 8304000 4998900 3305100 0 0 0 16054 3709 16731 83128 84271 84271 1 IQSPTEETEIFYHR FPQIGQIQYCSLEEKIQSPTEETEIFYHRG KIQSPTEETEIFYHRGV_____________ K I Q H R G 0 1 0 0 0 1 3 0 1 2 0 0 0 1 1 1 2 0 1 0 0 0 14 0 1748.837 Q6P4A7 Q6P4A7 322 335 SFXN4 Sideroflexin-4 yes yes 3 7.4055E-05 74.769 By MS/MS 2 1.2104 1.2114 26.063 2 Median 1.2104 1.2114 26.063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11941000 4606700 7334200 11941000 4606700 7334200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16055 3158 16732 83129;83130 84272 84272 1 IQSSGGPLQITMK VSDFYVPVSEMPEHKIQSSGGPLQITMKMV HKIQSSGGPLQITMKMVPKLLSPLVKDWAP K I Q M K M 0 0 0 0 0 2 0 2 0 2 1 1 1 0 1 2 1 0 0 0 0 0 13 0 1358.7228 Q9HAB8 Q9HAB8 196 208 PPCS Phosphopantothenate--cysteine ligase yes yes 2 1.0652E-06 146.16 By MS/MS By matching 1 1 1.0311 0.90414 11.102 2 Median 0.91755 0.83587 NaN 1 0 Median 1.1588 0.97797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19527000 10057000 9470000 17903000 9305100 8598200 1624000 752160 871840 0 0 0 0 0 0 0 0 0 0 0 0 16056 4007 16733 83131;83132 84273;84274 84273 2 IQSSHNFQLESVNK EFQGELEKQREQLDKIQSSHNFQLESVNKL KIQSSHNFQLESVNKLYQDEKAVLVNNITT K I Q N K L 0 0 2 0 0 2 1 0 1 1 1 1 0 1 0 3 0 0 0 1 0 0 14 0 1629.8111 Q8NBJ4;F8WAT9;C9JYM4 Q8NBJ4 84 97 GOLM1 Golgi membrane protein 1 yes no 3 0.061481 11.055 By MS/MS 1 1.4695 1.2425 NaN 1 Median NaN NaN NaN 0 0 Median 1.4695 1.2425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5972300 2383500 3588800 0 0 0 5972300 2383500 3588800 0 0 0 0 0 0 0 0 0 0 0 0 16057 3403 16734 83133 84275 84275 1 IQSTGIWGIGVATQK ASAPLHQNKSYFEFKIQSTGIWGIGVATQK IQSTGIWGIGVATQKVNLNQIPLGRDMHSL K I Q Q K V 1 0 0 0 0 2 0 3 0 3 0 1 0 0 0 1 2 1 0 1 0 0 15 0 1557.8515 Q5W111 Q5W111 71 85 SPRYD7 SPRY domain-containing protein 7 yes yes 2 0.00034364 55.426 By MS/MS 1 1.2419 1.168 NaN 1 Median 1.2419 1.168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108200 1312000 1796200 3108200 1312000 1796200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16058 3119 16735 83134 84276;84277 84276 2 IQSTVTQPGGK AGVQVSLRNTGTEAKIQSTVTQPGGKFAFF TEAKIQSTVTQPGGKFAFFKVLPGDYEILA K I Q G K F 0 0 0 0 0 2 0 2 0 1 0 1 0 0 1 1 2 0 0 1 0 0 11 0 1114.5982 A0A0G2JN29;A0A087X117;Q15155;J3KN36;P69849;Q5JPE7 J3KN36 160 170 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.047152 45.161 By MS/MS 1 1.328 1.1685 NaN 1 Median NaN NaN NaN 0 0 Median 1.328 1.1685 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1862500 862680 999830 0 0 0 1862500 862680 999830 0 0 0 0 0 0 0 0 0 0 0 0 16059 117;1301 16736 83135 84278 84278 1 IQTEIIEQEDLIK YLSGQLSEKEAALTKIQTEIIEQEDLIKAL TKIQTEIIEQEDLIKALHTQLEMQAKEHDE K I Q I K A 0 0 0 1 0 2 3 0 0 4 1 1 0 0 0 0 1 0 0 0 0 0 13 0 1570.8454 Q14789;E7EU81 Q14789 1425 1437 GOLGB1 Golgin subfamily B member 1 yes no 2 8.2461E-07 147.62 By MS/MS 1 1.0199 1.0235 NaN 1 Median 1.0199 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27397000 12449000 14948000 27397000 12449000 14948000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16060 2900 16737 83136 84279;84280 84280 2 IQTLPNQNQSQTQPLLK ATYNPNMPFKWNAQRIQTLPNQNQSQTQPL TLPNQNQSQTQPLLKTPPAVLQPIAPQTTF R I Q L K T 0 0 2 0 0 5 0 0 0 1 3 1 0 0 2 1 2 0 0 0 0 0 17 0 1950.0534 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 205 221 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2;3 9.8544E-15 119.39 By matching By MS/MS By MS/MS By matching 1 3 4 1 0.70039 0.70631 17.803 9 Median NaN NaN NaN 0 0 Median 0.71949 0.6324 NaN 1 0 Median 0.672 0.715 5.3867 3 1 Median 0.84508 0.73208 9.2804 4 2 Median 0.41224 0.43685 NaN 1 0 Median NaN NaN NaN 0 0 Median 125650000 73136000 52517000 0 0 0 623880 331390 292500 106020000 62483000 43538000 16993000 8959800 8033100 2015500 1361900 653590 0 0 0 16061 3331 16738 83137;83138;83139;83140;83141;83142;83143;83144;83145 84281;84282;84283;84284;84285;84286;84287;84288;84289 84288 9 IQTLTSSVR FLFRKKKEEVPEFTKIQTLTSSVRESSFVE VPEFTKIQTLTSSVRESSFVEKMKKTGRNI K I Q V R E 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 2 2 0 0 1 0 0 9 0 1003.5662 P16435;H0Y4R2;E7EWU0 P16435 57 65 POR NADPH--cytochrome P450 reductase yes no 2 0.001412 90.709 By MS/MS By MS/MS 2 1 1.1755 1.0744 14.051 2 Median 1.2293 1.1867 NaN 1 1 Median 1.1241 0.97282 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10544000 4701900 5841900 3910800 1753800 2157000 6633100 2948100 3685000 0 0 0 0 0 0 0 0 0 0 0 0 16062 2030 16739 83146;83147;83148 84290;84291;84292 84292 3 IQTNNNPFQVPIEEQR QCVKKRDLEQAISQRIQTNNNPFQVPIEEQ QTNNNPFQVPIEEQRGDYDLNAVRLCFQVT R I Q Q R G 0 1 3 0 0 3 2 0 0 2 0 0 0 1 2 0 1 0 0 1 0 0 16 0 1925.9595 Q2TAM5;E9PKH5;A0A087X0W8;Q04206;E9PI38;E9PQS6;E9PKV4;A0A087WVP0 Q2TAM5 134 149 RELA Transcription factor p65 yes no 2 0.00034546 48.004 By MS/MS 1 0.70991 0.69721 NaN 1 Median 0.70991 0.69721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926100 2245200 1680900 3926100 2245200 1680900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16063 114 16740 83149 84293 84293 1 IQTQLNLIHPDIFPLLTSFR LNENCASVHNLRSHKIQTQLNLIHPDIFPL NLIHPDIFPLLTSFRCKKEGPTLSVPMVQG K I Q F R C 0 1 1 1 0 2 0 0 1 3 4 0 0 2 2 1 2 0 0 0 0 0 20 0 2365.3158 Q9BQ52;G5E9D5;E7ES68;H7C2I4 Q9BQ52 385 404 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 3 5.5462E-09 78.088 By MS/MS By MS/MS 1 1 0.86384 0.79973 2.7787 2 Median 0.82235 0.8156 NaN 1 0 Median 0.90743 0.78417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9724000 4955100 4768900 1468400 852690 615690 8255600 4102400 4153200 0 0 0 0 0 0 0 0 0 0 0 0 16064 3782 16741 83150;83151 84294;84295;84296 84296 3 IQTQPGYANTLR FADIALAPMEAAKVRIQTQPGYANTLRDAA KVRIQTQPGYANTLRDAAPKMYKEEGLKAF R I Q L R D 1 1 1 0 0 2 0 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 12 0 1360.7099 Q00325;F8VVM2 Q00325 190 201 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 3.5722E-06 159.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 2 2 3 0.98525 0.89826 22.654 20 Median 0.83126 0.78726 10.313 4 1 Median 1.4171 1.2006 16.643 5 0 Median 0.83333 0.81149 9.5182 5 3 Median 1.4267 1.1903 NaN 1 0 Median 1.0565 1.0801 27.675 2 0 Median 1.7181 1.4207 22.496 3 0 Plateau 1027800000 466610000 561140000 248340000 131610000 116730000 658310000 275850000 382460000 72950000 37776000 35174000 11349000 4568600 6780500 19464000 9555000 9909200 17338000 7249300 10088000 16065 2674 16742 83152;83153;83154;83155;83156;83157;83158;83159;83160;83161;83162;83163;83164;83165;83166;83167;83168;83169;83170;83171;83172 84297;84298;84299;84300;84301;84302;84303;84304;84305;84306;84307;84308;84309;84310;84311;84312;84313;84314;84315;84316;84317;84318;84319;84320;84321;84322;84323;84324;84325;84326;84327;84328;84329;84330;84331;84332;84333;84334 84315 38 IQTSFYELPTDSHASLR DVESCYFAAQTMKMKIQTSFYELPTDSHAS TSFYELPTDSHASLRDSLLTHIQNLKDLSP K I Q L R D 1 1 0 1 0 1 1 0 1 1 2 0 0 1 1 3 2 0 1 0 0 0 17 0 1963.964 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 71 87 TNPO3 Transportin-3 yes no 3 0.00081049 34.395 By MS/MS By matching By MS/MS 1 1 1 0.91303 0.93024 75.324 3 Plateau 0.77563 0.74985 NaN 1 0 Median 0.25362 0.24521 NaN 1 0 Median 0.96566 1.0283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13939000 7022500 6916100 5888100 2948000 2940100 1383800 969960 413820 6666700 3104500 3562200 0 0 0 0 0 0 0 0 0 16066 4461 16743 83173;83174;83175 84335;84336 84336 2 IQTTVTELQK LSQETKIQHEELNNRIQTTVTELQKVKMEK ELNNRIQTTVTELQKVKMEKEALMTELSTV R I Q Q K V 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 3 0 0 1 0 0 10 0 1159.6449 Q15075 Q15075 834 843 EEA1 Early endosome antigen 1 yes yes 2 0.0010649 68.846 By MS/MS By MS/MS 1 1 1.0905 1.0098 8.1827 2 Median 1.1061 1.07 NaN 1 0 Median 1.075 0.95303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14787000 6313900 8472900 8756600 3413900 5342700 6030200 2900000 3130100 0 0 0 0 0 0 0 0 0 0 0 0 16067 2926 16744 83176;83177 84337;84338;84339;84340 84339 4 IQTYLQSTKPIIDLYEEMGK SSGRSDDNRESLEKRIQTYLQSTKPIIDLY QSTKPIIDLYEEMGKVKKIDASKSVDEVFD R I Q G K V 0 0 0 1 0 2 2 1 0 3 2 2 1 0 1 1 2 0 2 0 0 0 20 1 2369.2188 P30085;A0A494BXC7 P30085 152 171 CMPK1 UMP-CMP kinase yes no 3 3.7058E-09 81.807 By MS/MS By matching 1 1 0.9469 0.91351 11.723 2 Median 0.97697 0.99246 NaN 1 0 Median 0.91776 0.84084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19145000 9515400 9629800 17653000 8576400 9076700 1492100 939020 553040 0 0 0 0 0 0 0 0 0 0 0 0 16068 2187 16745 83178;83179 84341;84342 84341 2 IQVDAYFSPIHSQLDHLLDPSSFTGR SVVKQEGGDNDLIERIQVDAYFSPIHSQLD SQLDHLLDPSSFTGRASQQVQRFLEEEVYP R I Q G R A 1 1 0 3 0 2 0 1 2 2 3 0 0 2 2 4 1 0 1 1 0 0 26 0 2942.4563 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6;A0A096LNT0;A0A096LP76 A0A1B0GWJ0 427 452 ADSL Adenylosuccinate lyase yes no 4 0.024766 13.092 By MS/MS 1 0.94313 0.80105 NaN 1 Median NaN NaN NaN 0 0 Median 0.94313 0.80105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4421800 2155000 2266800 0 0 0 4421800 2155000 2266800 0 0 0 0 0 0 0 0 0 0 0 0 16069 200 16746 83180 84343;84344;84345 84345 3 IQVDTFK FTPRKHGGEKGVPFRIQVDTFKQNENGEYT GEKGVPFRIQVDTFKQNENGEYTDHLHSAS R I Q F K Q 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 849.45962 Q9NZI7 Q9NZI7 208 214 UBP1 Upstream-binding protein 1 yes yes 2 0.053242 38.792 By MS/MS By matching 1 1 1.0391 0.98637 16.777 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0799 1.1106 NaN 1 0 Median 0.99991 0.87603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2301800 1084300 1217500 0 0 0 0 0 0 1896400 900570 995850 405360 183680 221670 0 0 0 0 0 0 16070 4187 16747 83181;83182 84346 84346 1 IQVEQTRDEDLDTDSLD EQMETEHINPVTEKRIQVEQTRDEDLDTDS VEQTRDEDLDTDSLD_______________ R I Q L D - 0 1 0 5 0 2 2 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 17 1 1990.8967 V9GYT7 V9GYT7 49 65 PSIP1 yes yes 2 0.00010985 72.265 By MS/MS 1 0.73236 0.71712 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73236 0.71712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21575000 11665000 9909700 0 0 0 0 0 0 21575000 11665000 9909700 0 0 0 0 0 0 0 0 0 16071 4563 16748 83183 84347;84348 84347 2 IQVHPYK KEHLLLDLGLEAEYRIQVHPYKSILSELKA LGLEAEYRIQVHPYKSILSELKALCADLSP R I Q Y K S 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 7 0 883.49159 Q9NQW7;Q5T6H7;Q5T6H2 Q9NQW7 263 269 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 0.026054 53.554 By MS/MS 1 1.4887 1.2817 NaN 1 Median NaN NaN NaN 0 0 Median 1.4887 1.2817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2882300 1262000 1620300 0 0 0 2882300 1262000 1620300 0 0 0 0 0 0 0 0 0 0 0 0 16072 4070 16749 83184 84349 84349 1 IQVHYYEDGNVQLVSHK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA K I Q H K D 0 0 1 1 0 2 1 1 2 1 1 1 0 0 0 1 0 0 2 3 0 0 17 0 2028.0065 P47755;P52907 P52907 194 210 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 no no 3;4 3.5435E-11 105.38 By MS/MS By MS/MS By MS/MS By matching 4 2 3 1 1.2269 1.0544 7.0759 10 Median 1.272 1.1508 8.3872 4 0 Linear 1.3288 1.117 9.4382 2 1 Median 1.1029 1.0639 7.0618 3 0 Median 1.2357 1.0438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 215720000 98755000 116970000 127810000 57995000 69814000 18337000 7354400 10983000 67734000 32693000 35040000 1843300 711470 1131900 0 0 0 0 0 0 16073 2461;2354 16750 83185;83186;83187;83188;83189;83190;83191;83192;83193;83194 84350;84351;84352;84353;84354;84355;84356;84357;84358;84359;84360;84361;84362 84353 13 IQVLGSLVSLEMGK RGEIVRQIGDALREKIQVLGSLVSLEMGKI KIQVLGSLVSLEMGKILVEGVGEVQEYVDI K I Q G K I 0 0 0 0 0 1 1 2 0 1 3 1 1 0 0 2 0 0 0 2 0 0 14 0 1472.8273 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A0J9YWF7;A0A1B0GUY0;F8VVF2;A0A1B0GVU0 P49419 125 138 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 7.4957E-08 100.72 By MS/MS 2 1.2392 1.0507 19.976 2 Median NaN NaN NaN 0 0 Median 1.2392 1.0507 19.976 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23525000 10263000 13262000 0 0 0 23525000 10263000 13262000 0 0 0 0 0 0 0 0 0 0 0 0 16074 318 16751;16752 83195;83196 84363;84364;84365;84366 84364 153 4 IQVLQQQADDAEER ______________________________ KIQVLQQQADDAEERAERLQREVEGERRAR K I Q E R A 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1641.7958 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 14 27 TPM3 yes no 2 6.061E-11 171.92 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2359 1.0981 20.364 6 Median 1.1983 1.1196 NaN 1 0 Median 1.3486 1.1329 7.0269 2 0 Median 0.80956 0.78275 16.112 2 0 Median 1.3414 1.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45300000 22213000 23087000 9013800 4280600 4733200 13825000 6269400 7555900 20108000 10627000 9481500 2352400 1035700 1316700 0 0 0 0 0 0 16075 63 16753 83197;83198;83199;83200;83201;83202 84367;84368;84369;84370;84371;84372;84373;84374;84375;84376;84377 84375 11 IQVLQQQADDAEERAER ______________________________ VLQQQADDAEERAERLQREVEGERRAREQA K I Q E R L 3 2 0 2 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 17 1 1997.9766 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 14 30 TPM3 yes no 3 8.5058E-14 124.25 By MS/MS By MS/MS 1 1 1.2663 1.2108 17.772 2 Median 1.2753 1.373 NaN 1 0 Median 1.2574 1.0678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46389000 19476000 26913000 30870000 13163000 17707000 15519000 6313700 9205700 0 0 0 0 0 0 0 0 0 0 0 0 16076 63 16754 83203;83204 84378;84379;84380 84379 3 IQVLVEPDHFK ERQSVFPFESGKPFKIQVLVEPDHFKVAVN KPFKIQVLVEPDHFKVAVNDAHLLQYNHRV K I Q F K V 0 0 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1323.7187 P17931 P17931 200 210 LGALS3 Galectin-3 yes yes 2;3 0.00014249 90.629 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 1.0805 0.93479 22.41 12 Median 1.148 1.0381 7.0835 3 0 Plateau 1.0965 0.91922 14.334 3 1 Plateau 1.4793 1.422 9.0165 2 0 Median 1.0035 0.83972 13.908 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93086000 42471000 50615000 56055000 25887000 30168000 17351000 7804900 9545800 14838000 6503300 8334500 4842600 2275800 2566800 0 0 0 0 0 0 16077 2049 16755 83205;83206;83207;83208;83209;83210;83211;83212;83213;83214;83215;83216 84381;84382;84383;84384;84385;84386;84387;84388;84389;84390;84391;84392;84393 84383 13 IQVNHPAVLR AHNRGTELDLSWISKIQVNHPAVLRRAEQI SWISKIQVNHPAVLRRAEQIQARRTVKKEW K I Q L R R 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 2 0 0 10 0 1145.6669 Q9Y315;E9PPM8;E9PJ44;E9PJB9;E9PML7 Q9Y315 18 27 DERA Deoxyribose-phosphate aldolase yes no 2 0.0087559 75.213 By MS/MS 1 0.98175 0.91637 NaN 1 Median 0.98175 0.91637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7521800 4430600 3091300 7521800 4430600 3091300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16078 4402 16756 83217 84394 84394 0 IQVPDYYDIIK VRHDDSWPFLKLVSKIQVPDYYDIIKKPIA LVSKIQVPDYYDIIKKPIALNIIREKVNKC K I Q I K K 0 0 0 2 0 1 0 0 0 3 0 1 0 0 1 0 0 0 2 1 0 0 11 0 1365.718 Q9NRL2 Q9NRL2 1461 1471 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.035138 29.667 By MS/MS By matching 2 1 0.88456 0.9849 28.678 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7069 0.77013 34.787 2 0 Median 1.1029 0.99418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6882000 3425900 3456100 0 0 0 0 0 0 6478800 3243600 3235200 403200 182250 220950 0 0 0 0 0 0 16079 4084 16757 83218;83219;83220 84395 84395 1 IQVSSEKEAAPDAGAEPITADSDPAYSSK AFPLSQPFSLHHPSRIQVSSEKEAAPDAGA AEPITADSDPAYSSKVLLLSSPGLEELYRC R I Q S K V 6 0 0 3 0 1 3 1 0 2 0 2 0 0 3 5 1 0 1 1 0 0 29 1 2933.3778 Q8N163;E5RHJ4 Q8N163 281 309 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 1.1449E-20 66.083 By MS/MS By MS/MS 1 1 0.55287 0.61071 4.0116 2 Median 0.59951 0.62828 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50985 0.59363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32116000 19887000 12229000 10364000 6233500 4130300 0 0 0 21752000 13653000 8098700 0 0 0 0 0 0 0 0 0 16080 3354 16758 83221;83222 84396;84397;84398 84397 3 IQVTPPGFQLVFLPFADDKR FVALVPQEEELDDQKIQVTPPGFQLVFLPF PGFQLVFLPFADDKRKMPFTEKIMATPEQV K I Q K R K 1 1 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 20 1 2287.2365 P12956;B1AHC9 P12956 425 444 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 4.0713E-09 79.511 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 4 1 2 0.63452 0.66309 28.064 13 Median 0.8311 0.8388 12.917 4 0 Linear 0.9528 0.91504 17.662 2 0 Median 0.6379 0.59568 10.871 4 0 Linear 0.85106 0.78034 NaN 1 0 Median 0.45765 0.49022 57.713 2 0 Median NaN NaN NaN 0 0 Median 23561000 14108000 9453600 5811700 3717700 2094000 3889100 2023000 1866100 12316000 7457300 4858700 478310 261320 216990 1066400 648620 417770 0 0 0 16081 1985 16759 83223;83224;83225;83226;83227;83228;83229;83230;83231;83232;83233;83234;83235 84399;84400;84401;84402;84403;84404;84405;84406;84407;84408;84409;84410;84411;84412 84412 14 IQVTPPGFQLVFLPFADDKRK FVALVPQEEELDDQKIQVTPPGFQLVFLPF GFQLVFLPFADDKRKMPFTEKIMATPEQVG K I Q R K M 1 1 0 2 0 2 0 1 0 1 2 2 0 3 3 0 1 0 0 2 0 0 21 2 2415.3315 P12956;B1AHC9 P12956 425 445 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.010715 21.2 By matching By MS/MS By matching 1 1 1 0.5851 0.66727 24.826 3 Median 0.53779 0.58218 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5851 0.66727 NaN 1 0 Median 0.91786 0.94242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3845600 2447100 1398400 551620 391310 160310 0 0 0 3188200 2004000 1184200 105720 51818 53898 0 0 0 0 0 0 16082 1985 16760 83236;83237;83238 84413 84413 1 IQVWHAEHR VMDQHKLTRDQWEDRIQVWHAEHRGMLKDN DQWEDRIQVWHAEHRGMLKDNAMLEYLKIA R I Q H R G 1 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 1 0 1 0 0 9 0 1174.5996 P15311;E7EQR4 P15311 172 180 EZR Ezrin yes no 2 0.00070249 103.55 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1977 1.0365 17.294 5 Median NaN NaN NaN 0 0 Median 1.1716 1.0132 3.2122 2 0 Median 1.2458 1.3255 NaN 1 0 Median 1.1398 0.96776 22.01 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28751000 12825000 15926000 0 0 0 17648000 8127400 9521000 2934200 1271200 1663000 8168500 3426300 4742200 0 0 0 0 0 0 16083 879 16761 83239;83240;83241;83242;83243;83244 84414;84415;84416;84417;84418;84419 84418 6 IQVWHEEHR VLEQHKLNKDQWEERIQVWHEEHRGMLRED DQWEERIQVWHEEHRGMLREDAVLEYLKIA R I Q H R G 0 1 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 1 0 1 0 0 9 0 1232.6051 P26038 P26038 172 180 MSN Moesin yes yes 2;3 0.00056409 92.439 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 3 1 1.1774 1.0498 25.691 12 Median 1.0975 1.0481 18.811 4 1 Median 1.2236 1.0556 41.908 3 1 Plateau 1.2212 1.2351 NaN 1 0 Median 1.3762 1.1551 17.628 3 1 Plateau NaN NaN NaN 0 0 Median 1.0203 0.83507 NaN 1 0 Median 147760000 68392000 79366000 38012000 17699000 20313000 73030000 34418000 38612000 22787000 10156000 12631000 13127000 5754500 7372000 0 0 0 802230 363570 438660 16084 2139 16762 83245;83246;83247;83248;83249;83250;83251;83252;83253;83254;83255;83256 84420;84421;84422;84423;84424;84425;84426;84427;84428;84429;84430;84431;84432;84433;84434;84435;84436;84437;84438;84439 84429 20 IQYQLVDISQDNALR KSQQSEVTRILDGKRIQYQLVDISQDNALR IQYQLVDISQDNALRDEMRALAGNPKATPP R I Q L R D 1 1 1 2 0 3 0 0 0 2 2 0 0 0 0 1 0 0 1 1 0 0 15 0 1774.9214 Q5T123;Q9H299 Q5T123 33 47 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes no 2 0.00034016 54.776 By MS/MS By MS/MS By matching 1 2 1 1.2493 1.0785 17.46 4 Median 1.1521 1.1254 NaN 1 0 Median 1.2493 1.0321 0.19775 2 0 Median 1.4923 1.4918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3982800 1839700 2143100 2423000 1158400 1264700 1267000 568900 698100 292810 112450 180360 0 0 0 0 0 0 0 0 0 16085 3078 16763 83257;83258;83259;83260 84440;84441;84442 84441 3 IQYQLVDISQDNALRDEMR KSQQSEVTRILDGKRIQYQLVDISQDNALR LVDISQDNALRDEMRALAGNPKATPPQIVN R I Q M R A 1 2 1 3 0 3 1 0 0 2 2 0 1 0 0 1 0 0 1 1 0 0 19 1 2306.1325 Q5T123;Q9H299 Q5T123 33 51 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes no 3 0.019783 26.146 By MS/MS 1 1.6907 1.836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6907 1.836 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3985900 1460400 2525500 0 0 0 0 0 0 3985900 1460400 2525500 0 0 0 0 0 0 0 0 0 16086 3078 16764 83261 84443 84443 1 IRDEMVATEQER MGVVVATGVNTEIGKIRDEMVATEQERTPL IGKIRDEMVATEQERTPLQQKLDEFGEQLS K I R E R T 1 2 0 1 0 1 3 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 12 1 1475.7038 P16615;H7C5W9 P16615 235 246 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2;3 4.1317E-23 144.47 By MS/MS By MS/MS By matching 5 9 1 1.2752 1.2574 8.2422 14 Median 1.2219 1.3067 7.8775 5 1 Median 1.3085 1.2477 8.6578 8 0 Median NaN NaN NaN 0 0 Median 1.3005 1.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109070000 44608000 64465000 19014000 8310100 10704000 89464000 36119000 53345000 0 0 0 594910 178390 416520 0 0 0 0 0 0 16087 2031 16765 83262;83263;83264;83265;83266;83267;83268;83269;83270;83271;83272;83273;83274;83275;83276 84444;84445;84446;84447;84448;84449;84450;84451;84452;84453;84454;84455;84456;84457;84458;84459;84460 84451 17 IRDIDAATEAK YESRSLWKDVTFNLKIRDIDAATEAKHRLE FNLKIRDIDAATEAKHRLEERQRAEARERK K I R A K H 3 1 0 2 0 0 1 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 11 1 1201.6303 Q96SU4;A0A096LPC8 Q96SU4 678 688 OSBPL9 Oxysterol-binding protein-related protein 9 yes no 3 0.048855 28.903 By MS/MS 1 1.136 1.1546 NaN 1 Median 1.136 1.1546 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 945690 378920 566770 945690 378920 566770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16088 3738 16766 83277 84461 84461 1 IRDIDLK AREKDVERFFKGYGRIRDIDLKRGFGFVEF RFFKGYGRIRDIDLKRGFGFVEFEDPRDAD R I R L K R 0 1 0 2 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 7 1 871.51272 Q13243;B4DJK0;B4DUA4;G3V5K8 Q13243 30 36 SRSF5 Serine/arginine-rich splicing factor 5 yes no 2 0.062396 76.847 By matching By matching By matching By matching By MS/MS 1 2 1 1 1 1.0289 1.0018 14.224 6 Median 0.88119 0.94178 NaN 1 0 Median 1.3051 1.1886 8.3711 2 0 Median 0.75067 0.85353 NaN 1 0 Median 1.2062 1.0657 NaN 1 0 Median 0.86585 0.93645 NaN 1 0 Median NaN NaN NaN 0 0 Median 7472400 3509300 3963100 866560 480060 386490 2443400 1014100 1429300 627700 328980 298720 382890 166760 216130 3151900 1519400 1632500 0 0 0 16089 2800 16767 83278;83279;83280;83281;83282;83283 84462 84462 1 IRDILAQVK KIIGHFYASQMAQRKIRDILAQVKQQHQKG QMAQRKIRDILAQVKQQHQKGQSNQAQARR K I R V K Q 1 1 0 1 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1054.6499 Q9NZI8 Q9NZI8 553 561 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0013604 138.4 By MS/MS By MS/MS By MS/MS 1 1 1 1.1534 1.0575 7.0221 3 Median 1.0103 1.0122 NaN 1 0 Median 1.2722 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1534 1.0575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31447000 15430000 16017000 22053000 11333000 10720000 7797900 3347200 4450700 0 0 0 1596200 749610 846610 0 0 0 0 0 0 16090 4188 16768 83284;83285;83286 84463;84464;84465;84466 84464 4 IRDLLDVSK EFHIKVSYFEIYLDKIRDLLDVSKTNLSVH EIYLDKIRDLLDVSKTNLSVHEDKNRVPYV K I R S K T 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 9 1 1057.6132 O60282;A0A0G2JMZ6;P33176 P33176 142 150 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 0.026831 56.916 By MS/MS 1 0.74673 0.69481 NaN 1 Median NaN NaN NaN 0 0 Median 0.74673 0.69481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9464500 4283600 5180900 0 0 0 9464500 4283600 5180900 0 0 0 0 0 0 0 0 0 0 0 0 16091 2221;1609 16769 83287 84467 84467 1 IRDLLYEQYAIV GRIGLEGCLCQDFYRIRDLLYEQYAIV___ FYRIRDLLYEQYAIV_______________ R I R I V - 1 1 0 1 0 1 1 0 0 2 2 0 0 0 0 0 0 0 2 1 0 0 12 1 1494.8082 Q9P2I0 Q9P2I0 771 782 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.00098336 85.377 By MS/MS By MS/MS 1 1 1.1134 1.0651 0.87039 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0092 1.0717 NaN 1 0 Median 1.2284 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13659000 6620000 7039100 0 0 0 0 0 0 10381000 5147400 5233100 3278600 1472600 1806000 0 0 0 0 0 0 16092 4223 16770 83288;83289 84468;84469;84470;84471 84469 4 IRDLNDEINK KKVAQIQNAGLGEFRIRDLNDEINKLLREK LGEFRIRDLNDEINKLLREKGHWEVRIKEL R I R N K L 0 1 2 2 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1228.6412 Q9ULR0;D6RC18;A8MVI5;H0YA89 Q9ULR0 70 79 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 3 0.0020351 49.189 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1056 1.06 15.097 4 Median NaN NaN NaN 0 0 Median 1.0802 1.0079 NaN 1 0 Median 0.78344 0.85889 NaN 1 0 Median 1.2681 1.1147 NaN 1 0 Median 1.1316 1.2219 NaN 1 0 Median NaN NaN NaN 0 0 Median 5932400 2904400 3028000 0 0 0 598450 263040 335400 1999600 1051000 948630 934380 400180 534200 2400000 1190300 1209700 0 0 0 16093 4327 16771 83290;83291;83292;83293 84472;84473;84474;84475;84476 84473 5 IRDPNQGGKDITEEIMSGAR QPPQIAPKRERKTIRIRDPNQGGKDITEEI QGGKDITEEIMSGARTASTPTPPQTGGGLE R I R A R T 1 2 1 2 0 1 2 3 0 3 0 1 1 0 1 1 1 0 0 0 0 0 20 2 2186.075 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7;F8WCF2;C9JHW9 E7EX73 18 37 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3;4 7.5045E-19 139.81 By MS/MS By MS/MS 3 1 0.97321 1.0202 14.677 4 Median 0.96638 1 7.5649 3 0 Median NaN NaN NaN 0 0 Median 1.0623 1.2766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94139000 45665000 48474000 84638000 41340000 43298000 0 0 0 9501100 4325100 5176000 0 0 0 0 0 0 0 0 0 16094 894 16772 83294;83295;83296;83297 84477;84478;84479;84480;84481;84482 84477 6 IRDQAWDDVVR TEETTLQLEDIIKQRIRDQAWDDVVRKEKP IKQRIRDQAWDDVVRKEKPKEDAYEYKKRL R I R V R K 1 2 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 11 1 1371.6895 O00566 O00566 433 443 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3 0.00733 49.081 By MS/MS 1 1.6068 1.7458 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6068 1.7458 NaN 1 1 Median NaN NaN NaN 0 0 Median 8072500 2772200 5300400 0 0 0 0 0 0 0 0 0 0 0 0 8072500 2772200 5300400 0 0 0 16095 1471 16773 83298 84483 84483 1 IRDQAWDDVVRK TEETTLQLEDIIKQRIRDQAWDDVVRKEKP KQRIRDQAWDDVVRKEKPKEDAYEYKKRLT R I R R K E 1 2 0 3 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 2 0 0 12 2 1499.7845 O00566 O00566 433 444 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3 0.00044991 53.754 By MS/MS By matching 2 1 0.95142 1.0916 10.647 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94225 1.0387 7.0344 2 0 Median 1.4104 1.2226 NaN 1 0 Median 14171000 5767600 8403400 0 0 0 0 0 0 0 0 0 0 0 0 12824000 5192200 7631500 1347300 575410 771850 16096 1471 16774 83299;83300;83301 84484 84484 1 IRDQLPSWIDQER VVVGDMLRKADSQQKIRDQLPSWIDQERSW QKIRDQLPSWIDQERSWAVATLKIALPSLY K I R E R S 0 2 0 2 0 2 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 13 1 1654.8427 Q8NCM8;H0YDE0 Q8NCM8 3610 3622 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 3 0.00027986 63.185 By MS/MS 1 0.64661 0.70268 NaN 1 Median 0.64661 0.70268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5251700 3379500 1872200 5251700 3379500 1872200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16097 3418 16775 83302 84485;84486 84486 2 IRDQLSAVASK LSKETLDTMLDGLGRIRDQLSAVASK____ GLGRIRDQLSAVASK_______________ R I R S K - 2 1 0 1 0 1 0 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 11 1 1186.667 Q9P000 Q9P000 188 198 COMMD9 COMM domain-containing protein 9 yes yes 2;3 0.014278 45.137 By MS/MS By MS/MS By MS/MS 4 2 1 1.2947 1.2134 13.692 4 Median 1.278 1.2724 16.682 3 0 Median 1.3116 1.1572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10149000 2977900 7171500 5613200 2168100 3445100 3662600 809760 2852800 873610 0 873610 0 0 0 0 0 0 0 0 0 16098 4195 16776 83303;83304;83305;83306;83307;83308;83309 84487;84488;84489;84490 84487 4 IRDVVYFQAR NEAKNYFAKVDCKERIRDVVYFQARLYHTL DCKERIRDVVYFQARLYHTLGKTQERNRCA R I R A R L 1 2 0 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 10 1 1265.6881 F5H0F9;Q9UJX4;F5H0N1 F5H0F9 697 706 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 0.0029665 59.426 By MS/MS By MS/MS 1 1 1.6271 1.4418 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6271 1.4418 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1032800 378920 653860 0 0 0 0 0 0 0 0 0 1032800 378920 653860 0 0 0 0 0 0 16099 1019 16777 83310;83311 84491;84492 84491 2 IRDWYQR KVRALEEANTELEVKIRDWYQRQAPGPARD ANTELEVKIRDWYQRQAPGPARDYSQYYRT K I R Q R Q 0 2 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 7 1 1035.525 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 116 122 KRT16;KRT14;KRT17 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 1.1125E-12 147.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 1 2 3 0.48316 0.48792 98.721 11 Median 0.48316 0.48792 NaN 1 0 Median 0.40097 0.37581 66.107 3 2 Median 0.28101 0.30653 230.79 2 1 Median 0.53214 0.49636 NaN 1 0 Median 0.27561 0.296 101.07 2 0 Median 1.0044 0.85344 63.739 2 0 Median 118330000 85754000 32572000 3284700 2758000 526740 20105000 15222000 4882700 21671000 16332000 5339300 13775000 9067900 4707000 18624000 13921000 4703200 40867000 28454000 12413000 + 16100 768;739;754 16778 83312;83313;83314;83315;83316;83317;83318;83319;83320;83321;83322;83323 84493;84494;84495;84496;84497;84498;84499 84499 7 IREDLPNLESSEETEQINK NDAVTIQVLNQLIQKIREDLPNLESSEETE LPNLESSEETEQINKHFHNTLEHLRLRRES K I R N K H 0 1 2 1 0 1 5 0 0 2 2 1 0 0 1 2 1 0 0 0 0 0 19 1 2243.0917 Q96QK1 Q96QK1 750 768 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 3 6.5335E-07 56.936 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.87314 0.86286 12.197 4 Median 0.77065 0.79243 NaN 1 0 Median 1.003 0.9979 NaN 1 0 Median 0.73743 0.78251 NaN 1 0 Median 0.98926 0.93954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35113000 18346000 16766000 22282000 11823000 10459000 5924600 2811600 3113000 5228700 2864000 2364700 1677700 848050 829670 0 0 0 0 0 0 16101 3722 16779 83324;83325;83326;83327 84500;84501;84502;84503;84504;84505;84506;84507 84501 8 IREEFPDR GGGTGSGMGTLLISKIREEFPDRIMNTFSV GTLLISKIREEFPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 8 1 1060.5302 P04350;M0QYM7;M0R042;Q9BUF5;K7ESM5;K7ES63 P04350 155 162 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 2 0.032525 69.423 By MS/MS By matching By matching By matching 1 1 1 1 0.77846 0.814 13.208 4 Median 0.77781 0.78546 NaN 1 0 Median 1.0908 0.98371 NaN 1 0 Median 0.77912 0.84357 NaN 1 0 Median 0.77194 0.72004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13487000 7388000 6098600 8853300 5151700 3701600 3381100 1593600 1787500 757340 399950 357380 494860 242770 252090 0 0 0 0 0 0 16102 1849;3838 16780 83328;83329;83330;83331 84508 84508 1 IREEVTQEFTQYWAQR KLINEKKEKLTLEFKIREEVTQEFTQYWAQ REEVTQEFTQYWAQREADFKETLLQEREIL K I R Q R E 1 2 0 0 0 3 3 0 0 1 0 0 0 1 0 0 2 1 1 1 0 0 16 1 2083.0123 Q96Q89 Q96Q89 601 616 KIF20B Kinesin-like protein KIF20B yes yes 3 5.692E-06 70.197 By MS/MS 1 0.90482 1.143 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90482 1.143 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3701800 1771100 1930700 0 0 0 0 0 0 3701800 1771100 1930700 0 0 0 0 0 0 0 0 0 16103 3717 16781 83332 84509 84509 1 IREEYPDR GGGTGSGMGTLLISKIREEYPDRIMNTFSV GTLLISKIREEYPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 1 1076.5251 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q13885;Q9BVA1 P68371 155 162 TUBB;TUBB8;TUBB1;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 0.0039184 150.4 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 6 4 1 4 5 1.0461 0.95996 22.496 24 Median 0.91183 0.9399 29.248 4 0 Median 0.98594 0.9048 14.251 6 0 Median 0.91931 0.96843 12.743 4 0 Median 1.0523 0.96817 NaN 1 0 Median 1.3695 1.5119 7.4132 4 0 Median 1.0795 0.94945 10.511 5 0 Median 438700000 216280000 222420000 209490000 107200000 102290000 167480000 80697000 86783000 17042000 8535100 8506700 833270 385900 447370 26469000 10874000 15594000 17386000 8589000 8797100 16104 2634;1887;3849;2844 16782 83333;83334;83335;83336;83337;83338;83339;83340;83341;83342;83343;83344;83345;83346;83347;83348;83349;83350;83351;83352;83353;83354;83355;83356 84510;84511;84512;84513;84514;84515;84516;84517;84518;84519;84520;84521;84522;84523;84524 84512 15 IREFDSSTLNESVR DIPVEGEITIPMRSRIREFDSSTLNESVRN RIREFDSSTLNESVRNTIMRDLKAVGKKFM R I R V R N 0 2 1 1 0 0 2 0 0 1 1 0 0 1 0 3 1 0 0 1 0 0 14 1 1651.8166 Q96EC8 Q96EC8 46 59 YIPF6 Protein YIPF6 yes yes 3 6.62E-09 107.61 By MS/MS By MS/MS 2 2 0.95408 0.95917 6.7067 4 Median 0.87918 0.94778 0.58984 2 0 Median 1.0949 1.0262 8.4509 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50100000 24552000 25548000 24099000 12861000 11237000 26001000 11691000 14311000 0 0 0 0 0 0 0 0 0 0 0 0 16105 3633 16783 83357;83358;83359;83360 84525;84526;84527;84528;84529;84530 84526 6 IREGMAALQSDPWQQELYR EKMLCDTWCIEAAARIREGMAALQSDPWQQ MAALQSDPWQQELYRNFKSISKALVERGGV R I R Y R N 2 2 0 1 0 3 2 1 0 1 2 0 1 0 1 1 0 1 1 0 0 0 19 1 2290.1165 P49748;G3V1M7 P49748 614 632 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 3 6.8516E-11 79.88 By MS/MS 2 0.775 0.76356 0.44411 2 Median 0.775 0.76356 0.44411 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23775000 13334000 10442000 23775000 13334000 10442000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16106 2394 16784 83361;83362 84531;84532 84532 2 IRELEEAMAGER QLSGLQKQASAAEDRIRELEEAMAGERDKF EDRIRELEEAMAGERDKFRKMLDAKEQEMT R I R E R D 2 2 0 0 0 0 4 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 12 1 1402.6875 Q03252 Q03252 335 346 LMNB2 Lamin-B2 yes yes 2;3 2.4082E-05 158.34 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 7 5 0.95097 1.0264 41.987 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86957 1.0059 24.075 4 1 Median 1.6504 1.5378 39.427 4 0 Median 0.84445 0.91751 9.7217 7 2 Median 1.3068 1.1813 57.436 5 0 Median 119440000 58133000 61303000 0 0 0 0 0 0 28172000 14722000 13450000 11984000 3172800 8811300 72720000 37039000 35681000 6559100 3199000 3360100 16107 2709 16785;16786 83363;83364;83365;83366;83367;83368;83369;83370;83371;83372;83373;83374;83375;83376;83377;83378;83379;83380;83381;83382 84533;84534;84535;84536;84537;84538;84539;84540;84541;84542;84543;84544;84545;84546;84547;84548;84549;84550;84551;84552;84553 84542 1394 21 IRELEEAMAGERDK QLSGLQKQASAAEDRIRELEEAMAGERDKF RIRELEEAMAGERDKFRKMLDAKEQEMTEM R I R D K F 2 2 0 1 0 0 4 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 14 2 1645.8094 Q03252 Q03252 335 348 LMNB2 Lamin-B2 yes yes 3;4 0.00024813 65.092 By MS/MS By matching 4 1 0.85742 1.003 13.198 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79904 0.92445 14.649 4 1 Median 1.1916 1.0338 NaN 1 0 Median 42985000 22860000 20126000 0 0 0 0 0 0 0 0 0 0 0 0 38183000 21126000 17057000 4802700 1733500 3069300 16108 2709 16787 83383;83384;83385;83386;83387 84554;84555;84556;84557;84558 84554 5 IRELESQISELQEDLESER RVEEEAAQKNMALKKIRELESQISELQEDL ESQISELQEDLESERASRNKAEKQKRDLGE K I R E R A 0 2 0 1 0 2 6 0 0 2 3 0 0 0 0 3 0 0 0 0 0 0 19 1 2302.1288 P35579 P35579 1106 1124 MYH9 Myosin-9 yes yes 2;3 1.1827E-10 96.379 By MS/MS By MS/MS By matching 3 2 1 1.1116 1.292 20.387 6 Median 1.2616 1.3492 7.8351 3 0 Median 0.95515 0.94244 12.957 2 0 Median 1.0272 1.2976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55601000 25410000 30191000 20850000 8716000 12134000 32665000 15551000 17114000 2085500 1143300 942250 0 0 0 0 0 0 0 0 0 16109 2244 16788 83388;83389;83390;83391;83392;83393 84559;84560;84561;84562;84563;84564;84565 84560 7 IRELGSLPQEAFEK RQGMLLKKKEECMKKIRELGSLPQEAFEKY KIRELGSLPQEAFEKYQTLSLKQLFRKLEQ K I R E K Y 1 1 0 0 0 1 3 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 14 1 1615.857 Q9UQE7 Q9UQE7 943 956 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 3.8262E-05 81.703 By matching By MS/MS By MS/MS By matching 1 3 2 1 0.78212 0.88544 85.803 7 Median 0.75076 0.77803 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74811 0.84801 147.72 3 0 Median NaN NaN NaN 0 0 Median 0.82559 0.92168 5.6734 2 0 Median 1.095 0.96568 NaN 1 0 Median 32640000 18108000 14532000 1882800 1204100 678670 0 0 0 20264000 11138000 9126100 0 0 0 10115000 5579600 4535300 377640 186210 191430 16110 4362 16789 83394;83395;83396;83397;83398;83399;83400 84566;84567;84568 84567 3 IRELLVLPIYANLPSDMQAR ACEMLQDRCRRLGSKIRELLVLPIYANLPS VLPIYANLPSDMQARIFQPTPPGARKVVVA K I R A R I 2 2 1 1 0 1 1 0 0 2 4 0 1 0 2 1 0 0 1 1 0 0 20 1 2311.2722 O60231;A0A140T947;Q5SQH5;A0A140T8Y5;A0A140T9T4 O60231 639 658 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 0.029139 14.161 By matching By MS/MS 1 1 0.704 0.81835 26.274 2 Median 0.61169 0.67961 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81025 0.98543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2487800 1465600 1022200 1027900 634370 393490 0 0 0 1459900 831210 628690 0 0 0 0 0 0 0 0 0 16111 1605 16790 83401;83402 84569 84569 1 IRELQQQIEDLQK KMNELETEQRLSKERIRELQQQIEDLQKSL ERIRELQQQIEDLQKSLQEQGSKSEGESSS R I R Q K S 0 1 0 1 0 4 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 13 1 1639.8893 Q9UJC3 Q9UJC3 517 529 HOOK1 Protein Hook homolog 1 yes yes 3 0.0014265 40.552 By MS/MS 1 0.88173 0.90429 NaN 1 Median 0.88173 0.90429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4862100 2494700 2367400 4862100 2494700 2367400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16112 4295 16791 83403 84570;84571 84571 2 IRELTAVVQK LATRTQNVLGEKGRRIRELTAVVQKRFGFP EKGRRIRELTAVVQKRFGFPEGSVELYAEK R I R Q K R 1 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 10 1 1155.6976 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 66 75 RPS3 40S ribosomal protein S3 yes no 2 0.0063905 66.299 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 3 2 1.2301 1.223 32.677 13 Median 1.0376 1.0907 9.8364 3 0 Median 1.1597 1.0462 1.3658 2 0 Median 1.4207 1.5199 22.91 2 0 Median 1.3816 1.223 NaN 1 0 Median 1.7249 1.9316 42.65 3 0 Median 1.6884 1.5105 36.938 2 0 Median 180960000 83564000 97399000 98923000 46968000 51955000 38442000 17443000 20999000 23098000 10113000 12985000 1996200 713790 1282400 14442000 6597200 7844600 4063400 1729800 2333600 16113 2112 16792 83404;83405;83406;83407;83408;83409;83410;83411;83412;83413;83414;83415;83416 84572;84573;84574;84575;84576;84577;84578;84579;84580;84581 84574 10 IRELTAVVQKR LATRTQNVLGEKGRRIRELTAVVQKRFGFP KGRRIRELTAVVQKRFGFPEGSVELYAEKV R I R K R F 1 2 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 2 1311.7987 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 66 76 RPS3 40S ribosomal protein S3 yes no 2;3 2.4484E-05 131.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 3 2 1.208 1.2709 37.937 10 Median 1.1899 1.2471 7.8029 3 0 Median 1.4127 1.3806 6.3459 2 0 Median NaN NaN NaN 0 0 Median 1.2907 1.1191 39.966 3 0 Plateau 1.3612 1.5666 26.903 2 0 Median NaN NaN NaN 0 0 Median 90233000 36521000 53713000 45183000 19687000 25496000 25295000 8041600 17253000 0 0 0 11505000 5312900 6191900 8250700 3479300 4771400 0 0 0 16114 2112 16793 83417;83418;83419;83420;83421;83422;83423;83424;83425;83426;83427 84582;84583;84584;84585;84586;84587;84588;84589;84590;84591;84592;84593;84594 84586 13 IRELVPESQAYMDLLAFER GLKRRKMADKVLPQRIRELVPESQAYMDLL VPESQAYMDLLAFERKLDQTIARKRMEIQE R I R E R K 2 2 0 1 0 1 3 0 0 1 3 0 1 1 1 1 0 0 1 1 0 0 19 1 2279.162 J3KMX2;B9EGA3;Q92925;Q6STE5;C9JYI7;Q96GM5;F8VZ70;F8VUB0;F8VW95 J3KMX2 74 92 SMARCD2;SMARCD3;SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 no no 3 3.7426E-05 43.116 By MS/MS By MS/MS 1 1 0.85954 0.92139 2.6359 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86913 0.93872 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85005 0.90437 NaN 1 0 Median NaN NaN NaN 0 0 Median 5521800 2804500 2717300 0 0 0 0 0 0 4045500 2003100 2042400 0 0 0 1476300 801400 674930 0 0 0 16115 655;3659;3183 16794 83428;83429 84595;84596;84597;84598 84595 4 IREPLTAQQLETTTER DGRRPTGGRLEVMVRIREPLTAQQLETTTE REPLTAQQLETTTERWLVIDPVPAAVPTQV R I R E R W 1 2 0 0 0 2 3 0 0 1 2 0 0 0 1 0 4 0 0 0 0 0 16 1 1884.9905 Q6P1N0;K7EMP1 Q6P1N0 790 805 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 3 3.912E-05 66.577 By matching By MS/MS By MS/MS 1 1 1 1.0549 1.0607 28.225 3 Median 0.95473 1.0607 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4761 1.7056 NaN 1 0 Median 1.0549 1.0327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20521000 10338000 10184000 10306000 5377300 4929100 0 0 0 3498600 1853300 1645300 6716300 3107200 3609100 0 0 0 0 0 0 16116 3153 16795 83430;83431;83432 84599;84600 84600 2 IREQNLQDIK PLNTNPKEVQEMRNKIREQNLQDIKTAGPQ EMRNKIREQNLQDIKTAGPQSQVLCGVVMD K I R I K T 0 1 1 1 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1255.6884 E7EV99;E7ENY0;P35611;H0Y9H2;H0YFD8 E7EV99 506 515 ADD1 Alpha-adducin yes no 2;3 0.00013172 76.228 By matching By matching By MS/MS By MS/MS By matching 1 2 2 3 1 1.0269 1.0326 35.881 9 Median 1.2716 1.3144 NaN 1 0 Median 1.8859 1.8929 18.502 2 0 Median 0.91041 1.0353 8.8061 2 0 Median 1.0269 0.97609 16.462 3 0 Median 0.63019 0.69963 NaN 1 0 Median NaN NaN NaN 0 0 Median 12390000 6297400 6092700 747870 359290 388570 1795100 622520 1172600 5375500 2966200 2409300 3038600 1442800 1595900 1433000 906570 526420 0 0 0 16117 866 16796 83433;83434;83435;83436;83437;83438;83439;83440;83441 84601;84602;84603;84604 84601 4 IREQVLHHPQLGER ERASRTLYRIELLRKIREQVLHHPQLGERL KIREQVLHHPQLGERLKLCQPSLDLPEWWE K I R E R L 0 2 0 0 0 2 2 1 2 1 2 0 0 0 1 0 0 0 0 1 0 0 14 1 1710.9278 Q9P2D1 Q9P2D1 2064 2077 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 4 0.00092912 38.995 By MS/MS 1 0.50688 0.55706 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50688 0.55706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1985200 1217500 767660 0 0 0 0 0 0 1985200 1217500 767660 0 0 0 0 0 0 0 0 0 16118 4220 16797 83442 84605 84605 1 IRESFFR YPHVFTKGIPNVLRRIRESFFRVVPQFVVF GIPNVLRRIRESFFRVVPQFVVFYLIYTWG R I R F R V 0 2 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 7 1 953.5083 O14949 O14949 42 48 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 0.03539 89.142 By MS/MS 1 1.0744 1.0719 NaN 1 Median 1.0744 1.0719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15455000 7253400 8201700 15455000 7253400 8201700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16119 1505 16798 83443 84606 84606 1 IRETGERPSNEEIMR AKGSATKDFSVFFQKIRETGERPSNEEIMR IRETGERPSNEEIMRFSKLFEDELTLDNLT K I R M R F 0 3 1 0 0 0 4 1 0 2 0 0 1 0 1 1 1 0 0 0 0 0 15 2 1815.8897 O95202 O95202 293 307 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3;4 0.00014223 49.298 By MS/MS By matching By matching 2 1 1 1.0984 1.1551 17.404 4 Median 0.98809 0.9933 0.20356 2 0 Median 1.3286 1.3413 NaN 1 0 Median 1.2192 1.3442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8431600 4059400 4372200 6401600 3200100 3201500 1076300 442510 633840 953670 416810 536860 0 0 0 0 0 0 0 0 0 16120 1754 16799 83444;83445;83446;83447 84607;84608;84609;84610 84608 4 IRETTDFKVDTK ACRASGRGLQPKGVRIRETTDFKVDTKAAG GVRIRETTDFKVDTKAAGSGELGVTMKGPK R I R T K A 0 1 0 2 0 0 1 0 0 1 0 2 0 1 0 0 3 0 0 1 0 0 12 2 1451.762 O75369;E7EN95 O75369 469 480 FLNB Filamin-B yes no 2;3 0.00016097 86.624 By MS/MS By MS/MS By MS/MS 4 2 1 1.0615 1.1221 25.594 6 Median 1.0615 1.1221 3.7691 4 0 Median 1.0827 1.1534 NaN 1 0 Median 0.46139 0.60957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51341000 25129000 26211000 27836000 14086000 13750000 18389000 8272200 10116000 5115800 2771600 2344200 0 0 0 0 0 0 0 0 0 16121 1664 16800 83448;83449;83450;83451;83452;83453;83454 84611;84612;84613;84614;84615;84616;84617;84618;84619 84612 9 IREVLGFGGPDAR DTRTGRYARLPKDPKIREVLGFGGPDARLE PKIREVLGFGGPDARLEEKLMTVVSGPDPV K I R A R L 1 2 0 1 0 0 1 3 0 1 1 0 0 1 1 0 0 0 0 1 0 0 13 1 1385.7415 Q01970 Q01970 86 98 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3 0.0011483 43.69 By MS/MS 1 1.4723 1.7906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4723 1.7906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5292900 1936400 3356500 0 0 0 0 0 0 5292900 1936400 3356500 0 0 0 0 0 0 0 0 0 16122 2695 16801 83455 84620 84620 1 IREYFGEFGEIEAIELPMDPK KIFVGGLNPEATEEKIREYFGEFGEIEAIE EFGEIEAIELPMDPKLNKRRGFVFITFKEE K I R P K L 1 1 0 1 0 0 5 2 0 3 1 1 1 2 2 0 0 0 1 0 0 0 21 1 2482.209 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 170 190 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 3 0.030481 21.2 By MS/MS 1 0.81692 0.90426 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81692 0.90426 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 627400 340900 286500 0 0 0 0 0 0 627400 340900 286500 0 0 0 0 0 0 0 0 0 16123 805 16802 83456 84621 84621 1 IREYFGGFGEVESIELPMDNK KIFVGGLSPDTPEEKIREYFGGFGEVESIE GFGEVESIELPMDNKTNKRRGFCFITFKEE K I R N K T 0 1 1 1 0 0 4 3 0 2 1 1 1 2 1 1 0 0 1 1 0 0 21 1 2429.1573 Q14103;H0Y8G5;H0YA96;D6RAF8 Q14103 198 218 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 3 5.2034E-14 87.326 By MS/MS By MS/MS By MS/MS 5 3 4 1.0005 1.0315 9.2638 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95263 1.0111 10.563 5 0 Median 1.2265 1.1715 7.3762 3 0 Plateau 0.9588 0.99863 10.006 4 0 Median NaN NaN NaN 0 0 Median 90301000 43816000 46486000 0 0 0 0 0 0 61414000 29754000 31660000 3644400 1520800 2123600 25243000 12541000 12702000 0 0 0 16124 2854 16803;16804 83457;83458;83459;83460;83461;83462;83463;83464;83465;83466;83467;83468 84622;84623;84624;84625;84626;84627;84628;84629;84630;84631;84632 84628 1536 11 IRFQESEERPK VDKLAELKNLGQPIKIRFQESEERPKLFEE QPIKIRFQESEERPKLFEELGKQIQQYMKI K I R P K L 0 2 0 0 0 1 3 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 11 2 1417.7314 P34932 P34932 687 697 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 0.063168 14.876 By MS/MS By matching By matching By matching By matching By matching 3 2 1 1 2 2 1.0634 0.91209 14.141 11 Median 0.9559 0.90413 20.403 3 0 Median 1.0182 0.87174 6.3981 2 0 Median 0.79416 0.76421 NaN 1 0 Median 1.2493 1.0305 NaN 1 0 Median 0.96183 1.064 6.8313 2 0 Median 1.1432 0.93558 6.9216 2 0 Median 22358000 11306000 11052000 10089000 5047700 5041400 6953900 3500400 3453500 2011600 1157200 854420 687360 312330 375030 1634600 809080 825500 981130 479120 502020 16125 2230 16805 83469;83470;83471;83472;83473;83474;83475;83476;83477;83478;83479 84633;84634 84633 2 IRGETLGIIGLGR QSVEQIREVASGAARIRGETLGIIGLGRVG ARIRGETLGIIGLGRVGQAVALRAKAFGFN R I R G R V 0 2 0 0 0 0 1 4 0 3 2 0 0 0 0 0 1 0 0 0 0 0 13 1 1353.8092 Q13363;D6RAX2 Q13363 172 184 CTBP1 C-terminal-binding protein 1 yes no 2;3 2.6951E-06 96.82 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 4 2 1 1 1.1601 1.1871 26.15 10 Median 1.2082 1.2201 NaN 1 0 Median 1.4754 1.3306 NaN 1 0 Median 1.0801 1.1444 17.428 4 0 Median 1.4938 1.3933 4.4366 2 0 Median 1.0517 1.1187 NaN 1 0 Median 0.6833 0.60411 NaN 1 0 Median 44262000 20087000 24175000 2442300 1219600 1222800 459630 172720 286920 35738000 16322000 19416000 3485200 1218100 2267200 1455600 684620 771030 681520 470570 210960 16126 2808 16806 83480;83481;83482;83483;83484;83485;83486;83487;83488;83489 84635;84636;84637;84638;84639;84640 84636 6 IRGETLGLIGFGR QSVEQIREVASGAARIRGETLGLIGFGRTG ARIRGETLGLIGFGRTGQAVAVRAKAFGFS R I R G R T 0 2 0 0 0 0 1 4 0 2 2 0 0 1 0 0 1 0 0 0 0 0 13 1 1387.7936 P56545 P56545 178 190 CTBP2 C-terminal-binding protein 2 yes yes 2;3 4.594E-30 206.97 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 3 1 2 1 1.1047 1.1637 18.42 10 Median 1.1526 1.1639 20.525 2 0 Median 1.3268 1.1966 NaN 1 0 Median 1.0826 1.1554 6.1286 3 0 Median 1.3185 1.2299 NaN 1 0 Median 0.89962 0.96728 5.9932 2 0 Median 2.0031 1.7709 NaN 1 0 Median 101390000 48016000 53371000 4886800 2301700 2585100 1003000 461150 541880 71290000 33656000 37635000 21696000 10436000 11261000 2360800 1113800 1246900 149140 47480 101660 16127 2514 16807 83490;83491;83492;83493;83494;83495;83496;83497;83498;83499 84641;84642;84643;84644;84645;84646;84647;84648;84649 84644 9 IRIDSLSAQLSQLQK SNLVGAAHEELQQSRIRIDSLSAQLSQLQK IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I R Q K Q 1 1 0 1 0 3 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 15 1 1698.9628 P02545;Q3BDU5 P02545 297 311 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 1.2907E-09 163.51 By MS/MS By matching By MS/MS By matching 4 4 10 5 1.2422 1.2968 22.278 23 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2302 1.3102 4.2054 4 0 Median 2.0236 1.8968 30.119 4 0 Median 1.1292 1.2621 10.468 10 0 Median 1.4046 1.2551 16.216 5 0 Median 373950000 169940000 204010000 0 0 0 0 0 0 123030000 54211000 68823000 9269000 2760100 6508900 233020000 109470000 123540000 8627500 3491700 5135800 16128 1834;3010 16808 83500;83501;83502;83503;83504;83505;83506;83507;83508;83509;83510;83511;83512;83513;83514;83515;83516;83517;83518;83519;83520;83521;83522 84650;84651;84652;84653;84654;84655;84656;84657;84658;84659;84660;84661;84662;84663;84664;84665;84666;84667;84668;84669;84670;84671;84672;84673;84674 84658 25 IRITLTSR DTGKTPVEPEVAIHRIRITLTSRNVKSLEK PEVAIHRIRITLTSRNVKSLEKVCADLIRG R I R S R N 0 2 0 0 0 0 0 0 0 2 1 0 0 0 0 1 2 0 0 0 0 0 8 1 958.59236 P60866;E5RJX2;E5RIP1 P60866 20 27 RPS20 40S ribosomal protein S20 yes no 2 0.011399 125.16 By MS/MS By MS/MS By matching 1 1 1 1.1538 1.1892 6.3471 3 Median 1.1346 1.1892 NaN 1 0 Median 1.3004 1.1088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1538 1.2585 NaN 1 0 Median NaN NaN NaN 0 0 Median 39147000 16794000 22353000 15091000 6873800 8216700 22717000 9414300 13303000 0 0 0 0 0 0 1339700 505820 833870 0 0 0 16129 2530 16809 83523;83524;83525 84675;84676;84677;84678 84675 4 IRLDTEEQLKEK DYEHDKVSRDEAVNKIRLDTEEQLKEKFPE VNKIRLDTEEQLKEKFPEADPYEIIESFNV K I R E K F 0 1 0 1 0 1 3 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 12 2 1500.8148 Q8TCS8;H7C3C5 Q8TCS8 316 327 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes no 3 0.0012378 45.257 By MS/MS By MS/MS 1 1 1.0937 1.1867 10.304 2 Median 1.0017 1.1033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1942 1.2764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3446200 1568500 1877700 1485700 675920 809800 0 0 0 0 0 0 1960500 892560 1067900 0 0 0 0 0 0 16130 3467 16810 83526;83527 84679;84680;84681 84679 3 IRLDTETEGVPSTAIR KARNKLTGEVVALKKIRLDTETEGVPSTAI RLDTETEGVPSTAIREISLLKELNHPNIVK K I R I R E 1 2 0 1 0 0 2 1 0 2 1 0 0 0 1 1 3 0 0 1 0 0 16 1 1756.9319 G3V5T9;P24941 G3V5T9 35 50 CDK2 Cyclin-dependent kinase 2 yes no 3 3.8806E-07 91.616 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.89886 0.86463 25.436 4 Median NaN NaN NaN 0 0 Median 0.95483 0.87887 NaN 1 1 Median 0.88635 0.92513 NaN 1 0 Median 0.91154 0.85063 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60743 0.53424 NaN 1 0 Median 45797000 22722000 23075000 0 0 0 15441000 7870800 7570000 17128000 9237500 7890300 11565000 4575500 6989500 0 0 0 1663500 1038300 625270 16131 1120 16811 83528;83529;83530;83531 84682;84683;84684;84685;84686 84682 5 IRLENEIQTYR TECQNTEYQQLLDIKIRLENEIQTYRSLLE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG K I R Y R S 0 2 1 0 0 1 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 11 1 1433.7627 P13645;CON__P13645 P13645 440 450 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.9136E-167 281.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 12 21 14 11 8 0.041376 0.039856 125.08 74 Median 0.062971 0.06329 142.07 12 12 Median 0.073279 0.065264 123.52 11 11 Median 0.052689 0.058319 139.64 18 18 Median 0.037663 0.035824 129.85 14 14 Median 0.023749 0.025349 86.795 11 11 Median 0.026967 0.024533 82.735 8 8 Median 3708400000 3588300000 120150000 797230000 773110000 24115000 265820000 237830000 27990000 966100000 939440000 26655000 640520000 626080000 14440000 863760000 841740000 22027000 174990000 170060000 4925200 + 16132 756 16812 83532;83533;83534;83535;83536;83537;83538;83539;83540;83541;83542;83543;83544;83545;83546;83547;83548;83549;83550;83551;83552;83553;83554;83555;83556;83557;83558;83559;83560;83561;83562;83563;83564;83565;83566;83567;83568;83569;83570;83571;83572;83573;83574;83575;83576;83577;83578;83579;83580;83581;83582;83583;83584;83585;83586;83587;83588;83589;83590;83591;83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605;83606;83607;83608;83609;83610;83611;83612;83613 84687;84688;84689;84690;84691;84692;84693;84694;84695;84696;84697;84698;84699;84700;84701;84702;84703;84704;84705;84706;84707;84708;84709;84710;84711;84712;84713;84714;84715;84716;84717;84718;84719;84720;84721;84722;84723;84724;84725;84726;84727;84728;84729;84730;84731;84732;84733;84734;84735;84736;84737;84738;84739;84740;84741;84742;84743;84744;84745;84746;84747;84748;84749;84750;84751;84752;84753;84754;84755;84756;84757;84758;84759;84760;84761;84762;84763;84764;84765;84766;84767;84768;84769;84770;84771;84772;84773;84774;84775;84776;84777;84778;84779;84780 84730 94 IRLESEEEGVPSTAIR KGRHKTTGQVVAMKKIRLESEEEGVPSTAI RLESEEEGVPSTAIREISLLKELRHPNIVS K I R I R E 1 2 0 0 0 0 4 1 0 2 1 0 0 0 1 2 1 0 0 1 0 0 16 1 1784.9268 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 35 50 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2;3 2.3488E-08 133.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 3 0.8508 0.79273 20.588 11 Median 0.60784 0.65438 41.606 2 1 Median 0.82411 0.75855 4.5069 2 0 Median 0.9842 1.0273 0.20892 2 0 Median 0.92845 0.86642 9.5221 2 0 Median NaN NaN NaN 0 0 Median 0.89587 0.7914 4.9337 3 0 Plateau 134560000 66757000 67808000 9739600 5283800 4455700 11746000 6233500 5512700 91836000 44096000 47740000 17129000 8851200 8278000 0 0 0 4112900 2292100 1820900 16133 1871 16813 83614;83615;83616;83617;83618;83619;83620;83621;83622;83623;83624 84781;84782;84783;84784;84785;84786;84787;84788 84782 8 IRLPYELQK LHGRSFDDPIVQTERIRLPYELQKMPNGSA IVQTERIRLPYELQKMPNGSAGVKVRYLEE R I R Q K M 0 1 0 0 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 9 1 1158.6761 O95757;E9PDE8;D6RJ96 O95757 85 93 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.043302 49.418 By MS/MS By matching 2 1 0.47333 0.51724 54.239 3 Median 0.66058 0.65675 74.186 2 0 Median NaN NaN NaN 0 0 Median 0.47333 0.51724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20679000 11583000 9095300 18581000 10176000 8405100 0 0 0 2097600 1407500 690120 0 0 0 0 0 0 0 0 0 16134 1790 16814 83625;83626;83627 84789;84790 84789 2 IRNNSAIHIR DELEPETDTREPLTRIRNNSAIHIRVFRV_ EPLTRIRNNSAIHIRVFRV___________ R I R I R V 1 2 2 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 0 10 1 1192.6789 C9JYM0;O75817 C9JYM0 124 133 POP7 Ribonuclease P protein subunit p20 yes no 3 0.048831 28.177 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 702910 0 702910 0 0 0 393340 0 393340 309570 0 309570 0 0 0 0 0 0 0 0 0 16135 729 16815 83628;83629 84791;84792 84792 2 IRNPWGEVEWTGR AEEVESNGSLQKLIRIRNPWGEVEWTGRWN IRIRNPWGEVEWTGRWNDNCPSWNTIDPEE R I R G R W 0 2 1 0 0 0 2 2 0 1 0 0 0 0 1 0 1 2 0 1 0 0 13 1 1598.7954 P17655 P17655 284 296 CAPN2 Calpain-2 catalytic subunit yes yes 3 0.0031585 36.292 By MS/MS 1 0.96079 0.9851 NaN 1 Median 0.96079 0.9851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2736300 1248600 1487700 2736300 1248600 1487700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16136 2045 16816 83630 84793 84793 1 IRNYLSIFR NGKLGLVEFNILWNRIRNYLSIFRKFDLDK NILWNRIRNYLSIFRKFDLDKSGSMSAYEM R I R F R K 0 2 1 0 0 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 0 9 1 1180.6717 P07384 P07384 617 625 CAPN1 Calpain-1 catalytic subunit yes yes 3 0.0081848 47.603 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1119300 0 1119300 1119300 0 1119300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16137 1886 16817 83631 84794 84794 1 IRPFAVAAVLR DGKIQKLIITEETAKIRPFAVAAVLRNIKF ETAKIRPFAVAAVLRNIKFTKDRYDSFIEL K I R L R N 3 2 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 2 0 0 11 1 1211.7503 Q9NSD9 Q9NSD9 117 127 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 3 0.0028474 39.625 By MS/MS By matching By matching By matching 1 1 1 1 0.95197 0.88079 25.663 4 Median 0.84143 0.82901 NaN 1 0 Median 0.90235 0.81952 NaN 1 0 Median 1.2692 1.4163 NaN 1 0 Median 1.0043 0.9358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4823600 2213300 2610400 2636500 1292800 1343700 174750 84506 90249 1910200 788150 1122000 102200 47801 54398 0 0 0 0 0 0 16138 4102 16818 83632;83633;83634;83635 84795 84795 1 IRPGEQEQYESTIGFK KVLKISYKRSSFFIKIRPGEQEQYESTIGF RPGEQEQYESTIGFKLPSYRAAKKLWKVCV K I R F K L 0 1 0 0 0 2 3 2 0 2 0 1 0 1 1 1 1 0 1 0 0 0 16 1 1880.9268 P11171;A0A2R8Y7Y3;A0A2U3TZH6;Q4VB86;A0A2R8YD30;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y420;A0A3B3IUD6;A0A2R8Y6D0;A0A1B0GWG0;A0A2R8YFR9;A0A2R8Y6G5;A0A2R8YCW8;A0A2R8Y570;A0A2R8Y5G2;A0A2R8Y5Z6;A0A3B3IU06;A0A2R8Y4N6 P11171 451 466 EPB41 Protein 4.1 yes no 3 1.7722E-05 67.605 By MS/MS By MS/MS 1 1 0.8453 0.88836 9.8004 2 Median 0.91462 0.95211 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.78123 0.82888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11073000 5739000 5333700 6195700 3139600 3056000 0 0 0 4877100 2599400 2277700 0 0 0 0 0 0 0 0 0 16139 385 16819 83636;83637 84796;84797 84796 2 IRPGFEEQILYLQK NSEDNVKKLQEEIEKIRPGFEEQILYLQKQ KIRPGFEEQILYLQKQLDATTDEKKETVTQ K I R Q K Q 0 1 0 0 0 2 2 1 0 2 2 1 0 1 1 0 0 0 1 0 0 0 14 1 1732.9512 Q8IWJ2;B8ZZW2;B8ZZA5 Q8IWJ2 190 203 GCC2 GRIP and coiled-coil domain-containing protein 2 yes no 3 0.032989 19.323 By MS/MS By matching 1 1 1.0172 1.0079 34.407 2 Median 0.77806 0.79021 NaN 1 0 Median 1.3297 1.2855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3653500 1902100 1751400 3076100 1637900 1438300 577390 264250 313140 0 0 0 0 0 0 0 0 0 0 0 0 16140 3326 16820 83638;83639 84798 84798 1 IRPLEVPTTAGPASASTPTDGAK KAKRDGPPRPRGRPRIRPLEVPTTAGPASA TAGPASASTPTDGAKKPRGRGRGRGRKAEE R I R A K K 4 1 0 1 0 0 1 2 0 1 1 1 0 0 4 2 4 0 0 1 0 0 23 1 2236.1699 Q9ULL5;A0A3Q5ADB5 Q9ULL5 1176 1198 PRR12 Proline-rich protein 12 yes no 3 2.821E-21 98.002 By MS/MS By MS/MS By matching 2 1 1 0.39692 0.46286 14.783 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39438 0.45946 13.005 2 0 Median 0.59206 0.57157 NaN 1 0 Median 0.37472 0.42532 NaN 1 0 Median NaN NaN NaN 0 0 Median 38653000 26329000 12324000 0 0 0 0 0 0 33846000 23205000 10641000 2537300 1503200 1034100 2269600 1620600 648980 0 0 0 16141 4325 16821 83640;83641;83642;83643 84799;84800;84801;84802 84799 4 IRPLPEEMLSYAR CNVDSNKQYQLADWRIRPLPEEMLSYARDD WRIRPLPEEMLSYARDDTHYLLYIYDKMRL R I R A R D 1 2 0 0 0 0 2 0 0 1 2 0 1 0 2 1 0 0 1 0 0 0 13 1 1573.8286 Q01780 Q01780 426 438 EXOSC10 Exosome component 10 yes yes 3 0.0003267 60.628 By matching By MS/MS By matching By MS/MS 1 2 2 2 1.0399 1.0231 16.91 7 Median NaN NaN NaN 0 0 Median 1.2663 1.2529 NaN 1 0 Median 0.95639 1.086 21.512 2 0 Median 0.92678 0.86319 9.2305 2 0 Median 1.0077 1.0808 7.7579 2 0 Median NaN NaN NaN 0 0 Median 15536000 8050700 7485200 0 0 0 218640 56750 161890 11489000 6144400 5344200 291940 141020 150920 3536700 1708500 1828200 0 0 0 16142 2691 16822 83644;83645;83646;83647;83648;83649;83650 84803;84804;84805 84803 3 IRPTAVTLEHVPK FQGPQGFAVVRLSARIRPTAVTLEHVPKAL ARIRPTAVTLEHVPKALSPNSTISSAPKDF R I R P K A 1 1 0 0 0 0 1 0 1 1 1 1 0 0 2 0 2 0 0 2 0 0 13 1 1459.8511 Q9UH99;B0QY60 Q9UH99 619 631 SUN2 SUN domain-containing protein 2 yes no 3 0.00015068 72.681 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 0.81386 0.85546 25.674 6 Median 0.6286 0.64411 NaN 1 0 Median 0.97697 0.98132 NaN 1 0 Median 0.65407 0.69519 NaN 1 0 Median 1.1536 1.096 NaN 1 0 Median 0.67798 0.74574 NaN 1 1 Median 1.3676 1.1885 NaN 1 0 Median 32044000 17236000 14809000 2886700 1908900 977750 612550 267010 345540 14284000 8093500 6190400 1620600 538030 1082600 10296000 5527100 4769100 2344500 901390 1443200 16143 4271 16823 83651;83652;83653;83654;83655;83656 84806;84807;84808;84809;84810;84811;84812 84807 7 IRPTVQEDGGDVIYK DDEVVAMIKELLDTRIRPTVQEDGGDVIYK IRPTVQEDGGDVIYKGFEDGIVQLKLQGSC R I R Y K G 0 1 0 2 0 1 1 2 0 2 0 1 0 0 1 0 1 0 1 2 0 0 15 1 1688.8733 Q9UMS0;C9J8Q1;F8W9P7;H7C537 Q9UMS0 181 195 NFU1 NFU1 iron-sulfur cluster scaffold homolog, mitochondrial yes no 2;3 0.00035275 45.879 By MS/MS By MS/MS 2 1 0.86958 0.91533 22.826 3 Median 0.76223 0.79944 19.144 2 1 Median 1.1828 1.0991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18165000 9992100 8173300 13824000 7929000 5895200 4341100 2063000 2278100 0 0 0 0 0 0 0 0 0 0 0 0 16144 4333 16824 83657;83658;83659 84813;84814;84815 84813 3 IRPVFDYR FSYKPTLLTSKTLEKIRPVFDYRCMVSGSE TSKTLEKIRPVFDYRCMVSGSEQKFLIGLG K I R Y R C 0 2 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 8 1 1064.5767 Q8N1G2 Q8N1G2 585 592 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 0.066614 51.787 By MS/MS 1 0.76367 0.88241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76367 0.88241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6372200 3528800 2843400 0 0 0 0 0 0 6372200 3528800 2843400 0 0 0 0 0 0 0 0 0 16145 3358 16825 83660 84816 84816 1 IRQAEEQIEHLQR RRESKKIADEDALRRIRQAEEQIEHLQRKL RRIRQAEEQIEHLQRKLGATKQEEEALLSE R I R Q R K 1 2 0 0 0 3 3 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 13 1 1648.8645 O75150;H3BP71 O75150 730 742 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 0.0012949 57.804 By MS/MS 1 0.67982 0.82681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67982 0.82681 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5471100 2896000 2575100 0 0 0 0 0 0 5471100 2896000 2575100 0 0 0 0 0 0 0 0 0 16146 1648 16826 83661 84817 84817 1 IRQDDTSSSINFLTR IDEFLATGKLRKLEKIRQDDTSSSINFLTR IRQDDTSSSINFLTRVSGIGPSAARKFVDE K I R T R V 0 2 1 2 0 1 0 0 0 2 1 0 0 1 0 3 2 0 0 0 0 0 15 1 1751.8802 P06746;E7EW18;H0YBJ0;E5RIJ0 P06746 88 102 POLB DNA polymerase beta yes no 3 1.262E-06 88.768 By matching By MS/MS By MS/MS 1 1 1 1.2917 1.1928 10.944 3 Median NaN NaN NaN 0 0 Median 1.2917 1.2063 NaN 1 0 Median 0.96849 0.99263 NaN 1 0 Median 1.355 1.1928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18344000 9133600 9210000 0 0 0 299190 113920 185270 14566000 7461700 7103900 3478800 1557900 1920800 0 0 0 0 0 0 16147 1876 16827 83662;83663;83664 84818;84819;84820 84818 3 IRQNEINNPK TASFVARNGPEFEARIRQNEINNPKFNFLN EFEARIRQNEINNPKFNFLNPNDPYHAYYR R I R P K F 0 1 3 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 10 1 1224.6575 Q15459 Q15459 71 80 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.056034 26.786 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.69274 0.72027 15.72 4 Median 0.63465 0.6539 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82013 0.94024 NaN 1 0 Median 0.73309 0.70451 NaN 1 0 Median 0.65461 0.73639 NaN 1 0 Median NaN NaN NaN 0 0 Median 997450 523680 473770 99254 62446 36808 0 0 0 355290 193140 162150 163770 80600 83174 379130 187490 191640 0 0 0 16148 2954 16828 83665;83666;83667;83668;83669 84821;84822 84821 2 IRQQLEEVHAK RLEEVGVRAQDRLDKIRQQLEEVHAKVEEQ RLDKIRQQLEEVHAKVEEQGNQMRLQAEAF K I R A K V 1 1 0 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1349.7415 CON__Q03247 CON__Q03247 249 259 yes yes 3 0.0062346 51.162 By MS/MS By MS/MS 1 1 0.061498 0.062028 21.529 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.056446 0.053269 NaN 1 1 Median 0.067001 0.072228 NaN 1 1 Median NaN NaN NaN 0 0 Median 2484400 2328600 155800 0 0 0 0 0 0 0 0 0 702590 664470 38120 1781800 1664100 117680 0 0 0 + 16149 767 16829 83670;83671 84823;84824 84824 2 IRRDEEGNEIK RTRLKLKVENTIRWRIRRDEEGNEIKESNA IRWRIRRDEEGNEIKESNARIVKWSDGSMS R I R I K E 0 2 1 1 0 0 3 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 11 2 1357.695 Q8WVC0 Q8WVC0 424 434 LEO1 RNA polymerase-associated protein LEO1 yes yes 3 0.057196 16.254 By MS/MS 1 1.0993 1.2934 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0993 1.2934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 497210 239140 258070 0 0 0 0 0 0 497210 239140 258070 0 0 0 0 0 0 0 0 0 16150 3500 16830 83672 84825;84826 84825 2 IRTFLAQHASL RALVPDSVKKELLQRIRTFLAQHASL____ LLQRIRTFLAQHASL_______________ R I R S L - 2 1 0 0 0 1 0 0 1 1 2 0 0 1 0 1 1 0 0 0 0 0 11 1 1255.7037 Q9NPA8 Q9NPA8 91 101 ENY2 Transcription and mRNA export factor ENY2 yes yes 3 0.012433 28.327 By MS/MS 1 0.99018 0.96552 NaN 1 Median 0.99018 0.96552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3931400 2154000 1777400 3931400 2154000 1777400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16151 4045 16831 83673 84827;84828 84828 2 IRVDFSITK EAKERANGMELDGRRIRVDFSITKRPHTPT ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 9 1 1077.6182 P62995;H7BXF3;H7C2L4 P62995 189 197 TRA2B Transformer-2 protein homolog beta yes no 2 0.0026812 113.71 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 4 1 1.1665 1.1632 16.691 10 Median 1.3077 1.4011 NaN 1 0 Median 1.5624 1.4598 NaN 1 0 Median 1.2167 1.3555 21.461 2 0 Median 1.2697 1.1049 NaN 1 0 Median 1.0489 1.1291 13.271 4 0 Median 1.2736 1.1257 NaN 1 0 Median 179850000 88280000 91565000 8727500 3296300 5431200 209190 84974 124210 11951000 5718700 6232400 4900900 2109300 2791700 144440000 73037000 71404000 9614600 4033500 5581100 16152 2614 16832 83674;83675;83676;83677;83678;83679;83680;83681;83682;83683 84829;84830;84831;84832;84833;84834;84835;84836 84832 8 IRVDLASETSSR QALKRNGAQIADGFRIRVDLASETSSRDKR GFRIRVDLASETSSRDKRSVFVGNLPYKVE R I R S R D 1 2 0 1 0 0 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 1 1332.6997 P42696;A2A2V2 P42696 273 284 RBM34 RNA-binding protein 34 yes no 2;3 1.5488E-06 107.39 By MS/MS By MS/MS 2 1 1.1389 1.118 30.3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85753 0.93023 40.133 2 1 Median 1.2646 1.118 NaN 1 1 Median 32148000 17075000 15074000 0 0 0 0 0 0 0 0 0 0 0 0 28099000 15157000 12942000 4049500 1917700 2131900 16153 2314 16833 83684;83685;83686 84837;84838;84839 84837 3 IRVDYSITK EAMERANGMELDGRRIRVDYSITKRAHTPT ELDGRRIRVDYSITKRAHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 1 1 0 0 9 1 1093.6132 Q13595 Q13595 190 198 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.0035397 100.48 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1.2983 1.2244 17.925 8 Median 1.4776 1.5827 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2909 1.4346 22.061 2 0 Median 1.3241 1.1524 NaN 1 0 Median 1.0223 1.1068 17.329 2 0 Median 1.3271 1.1599 7.3188 2 0 Median 264750000 125750000 139000000 2456100 917420 1538700 0 0 0 17198000 7634000 9564200 4780000 2149300 2630700 179550000 88069000 91485000 60762000 26983000 33779000 16154 2828 16834 83687;83688;83689;83690;83691;83692;83693;83694 84840;84841;84842;84843 84842 4 IRVDYSITKR EAMERANGMELDGRRIRVDYSITKRAHTPT LDGRRIRVDYSITKRAHTPTPGIYMGRPTH R I R K R A 0 2 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 1 1 0 0 10 2 1249.7143 Q13595 Q13595 190 199 TRA2A Transformer-2 protein homolog alpha yes yes 3 0.00013519 107.24 By MS/MS By MS/MS By MS/MS 1 4 1 1.0714 1.1546 14.404 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2424 1.1233 NaN 1 0 Median 1.0072 1.1133 13.331 4 0 Median 1.3676 1.4592 NaN 1 0 Median 51831000 24123000 27708000 0 0 0 0 0 0 0 0 0 1339400 436290 903060 47922000 22663000 25259000 2569400 1023300 1546100 16155 2828 16835 83695;83696;83697;83698;83699;83700 84844;84845;84846;84847;84848;84849;84850;84851 84848 8 IRVESLLVTAISK VIDPGFAKQKVYNPRIRVESLLVTAISKAS PRIRVESLLVTAISKASAQQRAGRAGRTRP R I R S K A 1 1 0 0 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 2 0 0 13 1 1427.8712 O43143 O43143 451 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 1.8889E-06 109.24 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 2 2 3 3 1.0929 1.1217 21.336 13 Median 1.1503 1.1794 7.4179 2 0 Median 0.74316 0.74648 NaN 1 0 Median 1.0952 1.245 3.7584 2 0 Median 1.0052 0.9755 2.2545 2 0 Median 1.0791 1.1217 12.896 3 0 Median 1.3494 1.2248 31.238 3 0 Median 36868000 16796000 20072000 11042000 4918700 6122800 606520 310630 295890 4929900 2432500 2497300 602580 280120 322460 15222000 6862600 8359400 4465600 1992000 2473600 16156 1553 16836 83701;83702;83703;83704;83705;83706;83707;83708;83709;83710;83711;83712;83713 84852;84853;84854;84855;84856;84857;84858;84859;84860;84861;84862 84861 11 IRVMLYPSRI AKFRSNLPAKAIGHRIRVMLYPSRI_____ AIGHRIRVMLYPSRI_______________ R I R R I - 0 2 0 0 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 1 0 0 10 2 1246.722 P18077 P18077 101 110 RPL35A 60S ribosomal protein L35a yes yes 2;3 0.00034717 68.893 By MS/MS By matching By matching 4 1 1 1.0175 1.0329 13.976 6 Median 1.0175 1.0329 5.2103 4 0 Median 0.94278 0.80383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1161 1.2174 NaN 1 0 Median NaN NaN NaN 0 0 Median 30576000 15216000 15360000 25726000 12908000 12818000 1375600 650990 724610 0 0 0 0 0 0 3474500 1657100 1817400 0 0 0 16157 2054 16837;16838 83714;83715;83716;83717;83718;83719 84863;84864;84865;84866 84865 816 4 IRYESLTDPSK FLRELISNSSDALDKIRYESLTDPSKLDSG ALDKIRYESLTDPSKLDSGKELHINLIPNK K I R S K L 0 1 0 1 0 0 1 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 11 1 1307.6721 P07900;G3V2J8;P08238;Q58FF7;Q58FF6;Q58FF8 P07900 59 69 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta 2 no no 2;3 0.00019369 152.97 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.1118 1.0589 52.23 7 Median 1.1071 1.1849 21.172 2 0 Median 1.0643 1.0532 74.699 3 0 Median 1.2226 1.3895 NaN 1 0 Median 1.1118 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57744000 28071000 29674000 18504000 9214300 9289800 35264000 16868000 18396000 2668600 1417300 1251200 1307600 570720 736850 0 0 0 0 0 0 16158 1894;1899;3040;3039 16839 83720;83721;83722;83723;83724;83725;83726 84867;84868;84869;84870;84871;84872;84873;84874;84875;84876 84867 10 IRYESLTDPSKLDSGK FLRELISNSSDALDKIRYESLTDPSKLDSG RYESLTDPSKLDSGKELHINLIPNKQDRTL K I R G K E 0 1 0 2 0 0 1 1 0 1 2 2 0 0 1 3 1 0 1 0 0 0 16 2 1807.9316 P07900;G3V2J8;P08238;Q58FF7;Q58FF8 P07900 59 74 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 2;3;4 3.6574E-05 66.965 By MS/MS By MS/MS 3 2 1.0294 1.1121 15.433 5 Median 1.0294 1.1338 2.9061 3 0 Median 0.88961 0.94153 23.548 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87751000 41026000 46725000 84700000 39474000 45225000 3051500 1551300 1500100 0 0 0 0 0 0 0 0 0 0 0 0 16159 1894;1899;3040 16840 83727;83728;83729;83730;83731 84877;84878;84879;84880;84881;84882;84883;84884;84885 84880 9 ISADTHQFSVTER QYFITVVPTKLHTYKISADTHQFSVTERER YKISADTHQFSVTERERIINHAAGSHGVSG K I S E R E 1 1 0 1 0 1 1 0 1 1 0 0 0 1 0 2 2 0 0 1 0 0 13 0 1489.7161 A0A087WU02;Q96RQ1;H0YI58;H0YI50 A0A087WU02 272 284 ERGIC2 Endoplasmic reticulum-Golgi intermediate compartment protein 2 yes no 3 0.0088635 42.209 By MS/MS 1 2.2051 2.2321 NaN 1 Median 2.2051 2.2321 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2916700 737830 2178800 2916700 737830 2178800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16160 21 16841 83732 84886 84886 1 ISAEDGLKHEYFR FDLMNKFLTYFPGRRISAEDGLKHEYFRET RRISAEDGLKHEYFRETPLPIDPSMFPTWP R I S F R E 1 1 0 1 0 0 2 1 1 1 1 1 0 1 0 1 0 0 1 0 0 0 13 1 1563.7682 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 663 675 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 3 0.0034109 50.563 By MS/MS 1 1.1983 1.3595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1983 1.3595 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6883500 3257500 3626000 0 0 0 0 0 0 6883500 3257500 3626000 0 0 0 0 0 0 0 0 0 16161 259 16842 83733 84887 84887 1 ISAEGGEQVER PQLGAYAPPPHVIGRISAEGGEQVERVVEG VIGRISAEGGEQVERVVEGPAQAMSRGTMI R I S E R V 1 1 0 0 0 1 3 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1173.5626 J3KQL8;Q9BQE5 J3KQL8 361 371 APOL2 Apolipoprotein L2 yes no 2 0.00015337 82.749 By MS/MS By MS/MS 1 1 1.3491 1.2179 1.2232 2 Median 1.2657 1.2285 NaN 1 0 Median 1.4379 1.2075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3956600 1674000 2282700 1532700 661750 870940 2423900 1012200 1411700 0 0 0 0 0 0 0 0 0 0 0 0 16162 1320 16843 83734;83735 84888;84889;84890;84891 84890 4 ISAFIER EVVQIKAGKAEIDRRISAFIERKQAEINEN GKAEIDRRISAFIERKQAEINENNVREFCN R I S E R K 1 1 0 0 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 7 0 834.45995 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9 Q9NS73 163 169 MBIP MAP3K12-binding inhibitory protein 1 yes no 2 0.010611 81.784 By MS/MS By MS/MS 1 1 1.1968 1.1585 13.573 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97146 1.0525 NaN 1 0 Median 1.4743 1.2752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4210900 1829000 2381900 0 0 0 0 0 0 3675200 1609700 2065500 535700 219280 316420 0 0 0 0 0 0 16163 4097 16844 83736;83737 84892;84893;84894 84892 3 ISAILHPSTYLNK EEEYLQLTFDKSVFKISAILHPSTYLNKIL FKISAILHPSTYLNKILLGSEQGSLQLWNV K I S N K I 1 0 1 0 0 0 0 0 1 2 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1455.8086 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 151 163 WDR36 WD repeat-containing protein 36 yes no 3 0.054314 13.413 By MS/MS By matching 3 1 1.1059 1.151 30.635 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1619 1.262 35.663 3 0 Plateau 1.3704 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13440000 6603400 6836700 0 0 0 0 0 0 12347000 6153600 6193600 1092800 449760 643070 0 0 0 0 0 0 16164 188 16845 83738;83739;83740;83741 84895 84895 1 ISAISVAER PPEKVANIICTQPRRISAISVAERVAKERA CTQPRRISAISVAERVAKERAERVGLTVGY R I S E R V 2 1 0 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 9 0 944.5291 Q6P158;Q9H2U1;E7EWK3 Q6P158 604 612 DHX57;DHX36 Putative ATP-dependent RNA helicase DHX57;ATP-dependent RNA helicase DHX36 no no 2 0.061583 42.599 By MS/MS 1 0.49051 0.42596 NaN 1 Median NaN NaN NaN 0 0 Median 0.49051 0.42596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2262000 1373500 888520 0 0 0 2262000 1373500 888520 0 0 0 0 0 0 0 0 0 0 0 0 16165 3148;902 16846 83742 84896 84896 1 ISALALLK AKPWTKDHHYFKYCKISALALLKMVMHARS HYFKYCKISALALLKMVMHARSGGNLEVMG K I S L K M 2 0 0 0 0 0 0 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 827.54804 Q92905 Q92905 57 64 COPS5 COP9 signalosome complex subunit 5 yes yes 2 0.0074447 67.032 By MS/MS By matching By matching By matching 1 1 1 1 1.2133 1.0963 10.788 4 Median 1.125 1.0829 NaN 1 0 Median 1.1346 0.96146 NaN 1 0 Median 1.3014 1.2508 NaN 1 0 Median 1.2976 1.1098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7645600 3364900 4280700 4447400 1963700 2483700 932800 460720 472080 2065900 861790 1204100 199450 78676 120770 0 0 0 0 0 0 16166 3565 16847 83743;83744;83745;83746 84897;84898 84898 2 ISAMKEEKEQLSAER KMEDIERQVRELKTKISAMKEEKEQLSAER ISAMKEEKEQLSAERQEQIKQRTKLELKAK K I S E R Q 2 1 0 0 0 1 4 0 0 1 1 2 1 0 0 2 0 0 0 0 0 0 15 2 1747.8774 Q9UQE7 Q9UQE7 281 295 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3;4 7.1969E-10 115.83 By MS/MS By MS/MS By MS/MS 2 5 2 0.94829 1.1148 25.732 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84468 0.96249 10.075 2 0 Median NaN NaN NaN 0 0 Median 0.94829 1.1148 31.866 5 0 Median 1.2505 1.2829 17.002 2 1 Median 66673000 33588000 33085000 0 0 0 0 0 0 22305000 12288000 10016000 0 0 0 39072000 18837000 20235000 5297100 2463500 2833600 16167 4362 16848 83747;83748;83749;83750;83751;83752;83753;83754;83755 84899;84900;84901;84902;84903;84904;84905;84906;84907;84908;84909;84910;84911;84912 84900 14 ISANENSLAVR PPGPEVCITHQEGEKISANENSLAVRSTPA EGEKISANENSLAVRSTPAEDDSRDSQVKS K I S V R S 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1172.6149 Q9UHB6;F8VQE1;F8VS07;F8VRN8 Q9UHB6 325 335 LIMA1 LIM domain and actin-binding protein 1 yes no 2 3.5769E-09 138.98 By MS/MS By MS/MS 1 2 0.95643 0.91611 10.292 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80013 0.8518 NaN 1 0 Median 1.1433 0.98527 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12014000 6284700 5729000 0 0 0 0 0 0 6879100 3791800 3087300 5134700 2493000 2641700 0 0 0 0 0 0 16168 4273 16849 83756;83757;83758 84913;84914;84915 84915 3 ISANLYK LEELYQAVENLCSYKISANLYKQLRQICED VENLCSYKISANLYKQLRQICEDHIKAQIH K I S Y K Q 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 7 0 807.44905 Q13620;K4DI93;A6NE76 Q13620 252 258 CUL4B Cullin-4B yes no 2 0.044111 43.066 By MS/MS 1 1.2087 1.1628 NaN 1 Median 1.2087 1.1628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4176400 1851200 2325200 4176400 1851200 2325200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16169 1358 16850 83759 84916 84916 1 ISAPELLLHSPAR SEARSLLNPQDTPVKISAPELLLHSPARSA VKISAPELLLHSPARSAMCLTGSPQEQGVS K I S A R S 2 1 0 0 0 0 1 0 1 1 3 0 0 0 2 2 0 0 0 0 0 0 13 0 1402.7932 Q5VUA4 Q5VUA4 1887 1899 ZNF318 Zinc finger protein 318 yes yes 3 0.011676 25.718 By matching By MS/MS 1 1 0.48765 0.51764 16.611 2 Median 0.45332 0.46028 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52458 0.58216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3124900 2105100 1019800 1205300 826210 379070 0 0 0 1919600 1278800 640730 0 0 0 0 0 0 0 0 0 16170 3113 16851 83760;83761 84917 84917 1 ISAPNVDFNLEGPK ELKGPGVDVNLKGPRISAPNVDFNLEGPKV RISAPNVDFNLEGPKVKGSLGATGEIKGPT R I S P K V 1 0 2 1 0 0 1 1 0 1 1 1 0 1 2 1 0 0 0 1 0 0 14 0 1499.762 Q09666 Q09666 5447 5460 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 5.4319E-08 103.34 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 3 4 5 1 2 0.90925 0.83547 15.484 17 Median 0.72514 0.71363 1.4895 2 0 Median 0.76877 0.67129 7.3805 3 0 Median 0.92693 1.0064 4.4625 4 0 Median 0.9478 0.83635 7.6494 5 0 Median 0.79828 0.83547 NaN 1 0 Median 0.93686 0.9217 14.29 2 0 Median 147490000 79705000 67780000 52448000 30654000 21794000 7954800 4187900 3766900 65935000 33941000 31993000 13277000 6719400 6557600 6885500 3684800 3200700 985380 517530 467840 16171 2749 16852 83762;83763;83764;83765;83766;83767;83768;83769;83770;83771;83772;83773;83774;83775;83776;83777;83778 84918;84919;84920;84921;84922;84923;84924;84925;84926;84927;84928 84922 11 ISAPQER LSEVKKLAPKDVKIRISAPQERLYSTWIGG APKDVKIRISAPQERLYSTWIGGSILASLD R I S E R L 1 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 7 0 799.41882 P42025;P61163 P61163 330 336 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2 0.027519 51.787 By matching By MS/MS By matching 1 1 1 0.83926 0.84966 5.2486 3 Median 0.83926 0.84966 NaN 1 0 Median 0.99535 0.86241 NaN 1 0 Median 0.76253 0.78234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4731500 2124800 2606700 260920 150170 110750 3874200 1622200 2251900 596390 352390 244010 0 0 0 0 0 0 0 0 0 16172 2547;2304 16853 83779;83780;83781 84929;84930 84930 2 ISASGPESLLGGPGGASAAPAAGSK SGDLSYLRTPGGLCRISASGPESLLGGPGG GGPGGASAAPAAGSKVLLGFSSDESDVEAS R I S S K V 6 0 0 0 0 0 1 6 0 1 2 1 0 0 3 5 0 0 0 0 0 0 25 0 2109.0702 Q9Y2U8 Q9Y2U8 110 134 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 5.2029E-17 70.96 By MS/MS By matching 1 1 0.54176 0.51949 13.108 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43262 0.47351 NaN 1 0 Median 0.67842 0.56995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9057300 5903400 3153900 0 0 0 0 0 0 8336200 5490100 2846200 721020 413340 307680 0 0 0 0 0 0 16173 4392 16854 83782;83783 84931 84931 1 ISATEDTPEAEGEVPELYHQR HCLSAANVIFGQTGKISATEDTPEAEGEVP TPEAEGEVPELYHQRKGEIARCWIKYCLTL K I S Q R K 2 1 0 1 0 1 5 1 1 1 1 0 0 0 2 1 2 0 1 1 0 0 21 0 2370.0975 A0A1B0GUA3;Q96EK5;A0A1B0GUH6 A0A1B0GUA3 311 331 KIAA1279 KIF1-binding protein yes no 3 2.8134E-05 55.763 By MS/MS 1 0.78466 0.74243 NaN 1 Median 0.78466 0.74243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10991000 5961500 5029700 10991000 5961500 5029700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16174 323 16855 83784 84932 84932 1 ISATSIFFESMPYK DGGHLTHGYMSDVKRISATSIFFESMPYKL RISATSIFFESMPYKLNPKTGLIDYNQLAL R I S Y K L 1 0 0 0 0 0 1 0 0 2 0 1 1 2 1 3 1 0 1 0 0 0 14 0 1619.7905 P34897;G3V2Y4;G3V5L0;G3V4W5;G3V540;G3V2D2;P34896 P34897 183 196 SHMT2;SHMT1 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase;Serine hydroxymethyltransferase, cytosolic no no 2 0.00016309 79.741 By MS/MS By matching By MS/MS By matching By matching 1 1 2 2 1 1.1156 0.95313 14.958 7 Median 0.93498 0.86195 NaN 1 0 Median 1.127 0.95313 NaN 1 0 Median 0.83101 0.82117 0.048451 2 0 Median 1.2252 1.0568 12.569 2 0 Median NaN NaN NaN 0 0 Median 1.421 1.1717 NaN 1 0 Median 69788000 33268000 36521000 27005000 12796000 14210000 25095000 11243000 13852000 14502000 7907000 6594800 2790800 1188900 1601900 0 0 0 395530 133610 261920 16175 2228;2227 16856 83785;83786;83787;83788;83789;83790;83791 84933;84934;84935;84936;84937;84938 84934 6 ISAVESQPSR EAPDQKTLSAPQEERISAVESQPSRKRSVS PQEERISAVESQPSRKRSVSHGSNHTQKPD R I S S R K 1 1 0 0 0 1 1 0 0 1 0 0 0 0 1 3 0 0 0 1 0 0 10 0 1072.5513 E7EPN9;Q9Y520 E7EPN9 914 923 PRRC2C Protein PRRC2C yes no 2 0.059781 42.109 By MS/MS 1 0.10713 0.11634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10713 0.11634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697600 2416200 281450 0 0 0 0 0 0 2697600 2416200 281450 0 0 0 0 0 0 0 0 0 16176 872 16857 83792 84939 84939 1 ISAVSVAER DRAAECNIVVTQPRRISAVSVAERVAFERG VTQPRRISAVSVAERVAFERGEEPGKSCGY R I S E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 930.51345 Q08211 Q08211 448 456 DHX9 ATP-dependent RNA helicase A yes yes 2 7.3009E-07 161.02 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 6 5 1.1724 1.1322 14.686 15 Median 1.1394 1.1018 NaN 1 1 Median 1.2182 1.0028 NaN 1 0 Median 1.0464 1.15 NaN 1 0 Median 1.4783 1.255 NaN 1 0 Median 1.1325 1.1452 15.788 6 0 Median 1.3797 1.1322 19.232 5 0 Median 190580000 85500000 105080000 4243800 1890600 2353200 51747000 21258000 30489000 39302000 18428000 20874000 5492000 2327700 3164400 63128000 30794000 32334000 26667000 10802000 15865000 16177 2736 16858 83793;83794;83795;83796;83797;83798;83799;83800;83801;83802;83803;83804;83805;83806;83807 84940;84941;84942;84943;84944;84945;84946;84947;84948;84949;84950;84951;84952;84953;84954;84955;84956;84957;84958;84959;84960 84942 21 ISAVSVAQR GRGARCNVIITQPRRISAVSVAQRVSHELG ITQPRRISAVSVAQRVSHELGPSLRRNVGF R I S Q R V 2 1 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 929.52943 H7BXY3;Q7L2E3 H7BXY3 466 474 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0051222 58.596 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.1027 1.0618 32.201 5 Median 1.0514 1.0618 NaN 1 0 Median 1.0473 0.89237 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2024 1.8825 NaN 1 1 Median 1.3216 1.4333 NaN 1 0 Median 1.1027 0.90636 NaN 1 0 Median 6557200 2742500 3814700 504310 216940 287370 3347500 1592300 1755100 0 0 0 750530 230310 520230 1297100 407260 889830 657790 295680 362110 16178 1244 16859 83808;83809;83810;83811;83812 84961;84962 84962 2 ISDAHLADTMIGK VSALEVLPDRVATSRISDAHLADTMIGKAV SRISDAHLADTMIGKAVEHMFETEDGSKDE R I S G K A 2 0 0 2 0 0 0 1 1 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1370.6864 Q9Y657 Q9Y657 123 135 SPIN1 Spindlin-1 yes yes 3 0.00876 26.627 By matching By MS/MS By matching 1 2 1 1.1466 1.1629 12.33 4 Median 1.0602 1.1779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3336 1.1147 20.854 2 0 Median 1.1273 1.1481 NaN 1 0 Median NaN NaN NaN 0 0 Median 12936000 5265300 7670900 831900 377150 454740 0 0 0 0 0 0 2131500 819480 1312000 9972800 4068700 5904200 0 0 0 16179 4478 16860 83813;83814;83815;83816 84963 84963 1 ISDAIMNMQDNSVQVSQK GPFNIESVMDPIDVKISDAIMNMQDNSVQV AIMNMQDNSVQVSQKVFQGCGPPKPLPAGR K I S Q K V 1 0 2 2 0 3 0 0 0 2 0 1 2 0 0 3 0 0 0 2 0 0 18 0 2006.9401 O75487 O75487 319 336 GPC4 Glypican-4;Secreted glypican-4 yes yes 2 0.0041611 28.327 By matching By matching By MS/MS 1 1 1 0.90134 0.89321 27.98 3 Median 0.58048 0.56957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.131 0.95146 NaN 1 0 Median 0.90134 0.89321 NaN 1 0 Median NaN NaN NaN 0 0 Median 5349800 2983500 2366400 2252000 1397700 854240 0 0 0 0 0 0 164110 78793 85317 2933800 1507000 1426800 0 0 0 16180 1677 16861 83817;83818;83819 84964;84965 84965 2 ISDDLMQK VIFMMNSKRYKEAQKISDDLMQKISTQNRR RYKEAQKISDDLMQKISTQNRRALDLVAAK K I S Q K I 0 0 0 2 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 8 0 948.45863 O43242;H0YGV8 O43242 187 194 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 2 0.00054798 101.28 By MS/MS 2 1.024 0.85472 5.1735 2 Median NaN NaN NaN 0 0 Median 1.024 0.85472 5.1735 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43828000 20404000 23424000 0 0 0 43828000 20404000 23424000 0 0 0 0 0 0 0 0 0 0 0 0 16181 1560 16862 83820;83821 84966;84967 84966 2 ISDDRLTVVGEK ERVLLALHDRAPQLKISDDRLTVVGEKGYS QLKISDDRLTVVGEKGYSMVRASHGVRKGA K I S E K G 0 1 0 2 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 12 1 1330.7092 F5H8F7;Q9UBL3 F5H8F7 255 266 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.00027557 59.975 By MS/MS By MS/MS 1 1 0.90908 0.89717 29.133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0378 1.1024 NaN 1 0 Median 0.79632 0.73014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10569000 5590400 4979100 0 0 0 0 0 0 9936700 5238700 4697900 632780 351630 281150 0 0 0 0 0 0 16182 1048 16863 83822;83823 84968;84969;84970 84969 3 ISDEDWDIIHR VVNNAGILRDRSFARISDEDWDIIHRVHLR SFARISDEDWDIIHRVHLRGSFQVTRAAWE R I S H R V 0 1 0 3 0 0 1 0 1 3 0 0 0 0 0 1 0 1 0 0 0 0 11 0 1397.6575 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 111 121 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 0.00040741 58.676 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.1991 1.2114 11.484 7 Median 1.1991 1.2114 3.452 3 0 Median 1.6739 1.4458 NaN 1 0 Median 1.0707 1.0846 2.8443 2 0 Median 1.6561 1.3924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22832000 10759000 12073000 9527600 4158100 5369500 286410 128860 157540 12674000 6345700 6327900 344410 126110 218310 0 0 0 0 0 0 16183 393 16864 83824;83825;83826;83827;83828;83829;83830 84971;84972;84973 84972 3 ISDEGIAYLVK QQQRLLDIAKKENVKISDEGIAYLVKVSEG ENVKISDEGIAYLVKVSEGDLRKAITFLQS K I S V K V 1 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1206.6496 P35249;C9JZI1 P35249 222 232 RFC4 Replication factor C subunit 4 yes no 2 0.00022785 73.985 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.4769 1.3963 57.689 6 Median 1.4015 1.3006 NaN 1 0 Median 0.74042 0.63101 NaN 1 0 Median 1.2844 1.2972 20.461 2 1 Median NaN NaN NaN 0 0 Median 3.1469 3.119 NaN 1 0 Median 3.0138 2.5323 NaN 1 0 Median 51860000 20450000 31410000 11225000 3906700 7318700 12199000 6149900 6049100 24251000 9448700 14803000 0 0 0 3029000 714270 2314700 1154900 230170 924700 16184 2237 16865 83831;83832;83833;83834;83835;83836 84974;84975;84976;84977;84978 84977 5 ISDFHETYTFK QQHRDFIALREELGRISDFHETYTFKQPVF ELGRISDFHETYTFKQPVFTVSKDSVLAGT R I S F K Q 0 0 0 1 0 0 1 0 1 1 0 1 0 2 0 1 2 0 1 0 0 0 11 0 1386.6456 Q6W2J9;H7BYY2;A1A564 Q6W2J9 862 872 BCOR BCL-6 corepressor yes no 3 0.0017944 43.897 By MS/MS By matching By matching 2 2 1 0.99605 1.0596 21.722 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94316 1.0303 6.2648 2 0 Median 0.99691 0.87059 38.257 2 0 Median 0.99945 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median 18107000 8907100 9200100 0 0 0 0 0 0 14113000 7216200 6897200 2037900 950490 1087400 1955900 740350 1215600 0 0 0 16185 3191 16866 83837;83838;83839;83840;83841 84979;84980 84979 2 ISDIQSQLEK QSKVPLSEFDFSWSKISDIQSQLEKLIEKN FSWSKISDIQSQLEKLIEKNYFLHKSAQEA K I S E K L 0 0 0 1 0 2 1 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1159.6085 Q9NVP1 Q9NVP1 558 567 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00036244 123.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 4 1.2257 1.0972 25.112 11 Median NaN NaN NaN 0 0 Median 1.5644 1.3445 NaN 1 0 Median 1.0839 1.0686 NaN 1 0 Median 2.6299 2.2608 NaN 1 1 Median 1.1328 1.1542 16.593 4 0 Median 1.2658 1.0484 8.4532 4 1 Median 104400000 48759000 55641000 0 0 0 3256700 1317100 1939600 46316000 21480000 24835000 736400 209690 526710 34258000 16437000 17821000 19833000 9315000 10518000 16186 4137 16867 83842;83843;83844;83845;83846;83847;83848;83849;83850;83851;83852 84981;84982;84983;84984;84985;84986;84987;84988;84989;84990;84991;84992;84993;84994 84994 14 ISDLGGGVPLR VKTLVTLGKEDLSIKISDLGGGVPLRKIDR LSIKISDLGGGVPLRKIDRLFNYMYSTAPR K I S L R K 0 1 0 1 0 0 0 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 11 0 1082.6084 Q15120 Q15120 285 295 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.00013952 112.84 By MS/MS By MS/MS 1 1 0.68571 0.62918 72.683 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38471 0.37633 NaN 1 0 Median 1.2222 1.0519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41077000 26408000 14669000 0 0 0 0 0 0 23670000 17558000 6112200 17407000 8850800 8556700 0 0 0 0 0 0 16187 2929 16868 83853;83854 84995;84996;84997;84998;84999 84995 5 ISDQNIIPSVTR QLALLLQQFQTLKMRISDQNIIPSVTRSVS KMRISDQNIIPSVTRSVSVPDTGSIWELQP R I S T R S 0 1 1 1 0 1 0 0 0 3 0 0 0 0 1 2 1 0 0 1 0 0 12 0 1341.7252 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1 Q6Y7W6 670 681 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 2 7.171E-05 124.1 By MS/MS By matching 1 1 0.58104 0.55751 68.67 2 Median 0.95919 0.90601 NaN 1 0 Median 0.35198 0.34306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7524300 4170300 3354000 6445500 3338000 3107500 1078800 832350 246490 0 0 0 0 0 0 0 0 0 0 0 0 16188 3192 16869 83855;83856 85000 85000 1 ISDSEGFK QGPPPGGPGGRSEEKISDSEGFKANLSLLR GGRSEEKISDSEGFKANLSLLRRPGEKTYT K I S F K A 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 881.41306 P23246 P23246 272 279 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.0055542 87.323 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 2 1.2155 1.1364 15.775 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0095 1.0967 19.057 3 0 Median 1.4583 1.2555 1.331 2 0 Median 0.97559 0.96824 22.645 2 0 Median 1.3813 1.1507 4.6883 2 0 Median 48639000 21915000 26724000 0 0 0 0 0 0 19355000 9319200 10035000 12755000 5217300 7538000 11914000 5463000 6451000 4614600 1915300 2699300 16189 2107 16870 83857;83858;83859;83860;83861;83862;83863;83864;83865;83866 85001;85002;85003;85004;85005;85006;85007;85008;85009;85010 85009 10 ISDSEGFKANLSLLR QGPPPGGPGGRSEEKISDSEGFKANLSLLR ISDSEGFKANLSLLRRPGEKTYTQRCRLFV K I S L R R 1 1 1 1 0 0 1 1 0 1 3 1 0 1 0 3 0 0 0 0 0 0 15 1 1648.8784 P23246 P23246 272 286 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.034913 16.88 By MS/MS By matching 2 2 1.4008 1.3909 15.568 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1308 1.2074 22.897 2 0 Median 1.5349 1.3909 1.6397 2 0 Median 7110200 3150900 3959300 0 0 0 0 0 0 0 0 0 0 0 0 6784000 3035200 3748900 326150 115740 210410 16190 2107 16871 83867;83868;83869;83870 85011 85011 1 ISDSVLVDIKDTEPLIQTAK GYEQAARVAIEHLDKISDSVLVDIKDTEPL LVDIKDTEPLIQTAKTTLGSKVVNSCHRQM K I S A K T 1 0 0 3 0 1 1 0 0 3 2 2 0 0 1 2 2 0 0 2 0 0 20 1 2184.1889 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 151 170 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 1.0643E-18 133.16 By MS/MS By MS/MS By MS/MS By matching 1 5 1 1 1.0204 0.99977 21.561 8 Median 0.80763 0.75576 NaN 1 1 Median 1.0281 0.96687 12.479 5 1 Median 0.99265 1.0338 NaN 1 0 Median 1.5523 1.5516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104760000 50571000 54191000 17084000 8437200 8647200 63301000 30536000 32766000 23315000 11232000 12083000 1061400 365750 695630 0 0 0 0 0 0 16191 2364 16872 83871;83872;83873;83874;83875;83876;83877;83878 85012;85013;85014;85015;85016;85017;85018;85019 85015 8 ISEAKEELKESK SSLESLVFDLRTKKRISEAKEELKESKKPK KKRISEAKEELKESKKPKKDEVKETKELKK R I S S K K 1 0 0 0 0 0 4 0 0 1 1 3 0 0 0 2 0 0 0 0 0 0 12 2 1389.7351 Q99549 Q99549 203 214 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 0.057669 15.545 By MS/MS By matching 1 1 0.89693 0.93727 10.106 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90298 1.0067 NaN 1 0 Median 0.89091 0.87263 NaN 1 0 Median 2590400 1398600 1191800 0 0 0 0 0 0 0 0 0 0 0 0 2237300 1199300 1038000 353120 199310 153820 16192 3752 16873 83879;83880 85020 85020 1 ISEDETER AGQEAVVDLHADDSRISEDETERNGDDGTH LHADDSRISEDETERNGDDGTHDKGLKICR R I S E R N 0 1 0 1 0 0 3 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 8 0 977.43017 S4R3H4;E7EQT4;Q9UKV3;G3V3B0;G3V3T3 S4R3H4 839 846 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.049701 34.808 By MS/MS 2 0.86361 0.89628 12.529 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86361 0.89628 12.529 2 0 Median NaN NaN NaN 0 0 Median 1287200 686240 600930 0 0 0 0 0 0 0 0 0 0 0 0 1287200 686240 600930 0 0 0 16193 4560 16874 83881;83882 85021 85021 1 ISEDKNPDYR RNEGTATYAAAVLFRISEDKNPDYRKRVSV AVLFRISEDKNPDYRKRVSVELTNSLFKHD R I S Y R K 0 1 1 2 0 0 1 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 10 1 1235.5782 P14923 P14923 652 661 JUP Junction plakoglobin yes yes 3 0.031322 23.376 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.60013 0.59656 23.448 4 Median 0.59873 0.60773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39014 0.41425 NaN 1 0 Median 0.60153 0.5856 NaN 1 0 Median 0.65248 0.72564 NaN 1 0 Median NaN NaN NaN 0 0 Median 4561500 2904700 1656800 369470 234360 135100 0 0 0 3192800 2092700 1100100 187950 110120 77827 811310 467550 343770 0 0 0 16194 2013 16875 83883;83884;83885;83886 85022;85023;85024 85023 3 ISEDVEER EDSSSDPRLRRLQNRISEDVEERLARHRKI LRRLQNRISEDVEERLARHRKIVEPEVVGE R I S E R L 0 1 0 1 0 0 3 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 8 0 975.4509 P55081 P55081 93 100 MFAP1 Microfibrillar-associated protein 1 yes yes 2 1.1218E-05 135.84 By MS/MS By MS/MS By MS/MS 1 3 1 0.95164 0.96014 14.043 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4347 1.217 NaN 1 0 Median 0.92458 0.95447 0.8375 2 1 Median NaN NaN NaN 0 0 Median 14093000 7147600 6944900 0 0 0 0 0 0 0 0 0 395540 172440 223110 13697000 6975200 6721800 0 0 0 16195 2495 16876 83887;83888;83889;83890;83891 85025;85026;85027;85028 85026 4 ISEEDELDTK DLLTMVVDYRTRVLKISEEDELDTKLTRIP TRVLKISEEDELDTKLTRIPSAKKYKDIIR K I S T K L 0 0 0 2 0 0 3 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1177.535 B1AKZ5;Q15121 B1AKZ5 67 76 PEA15 Astrocytic phosphoprotein PEA-15 yes no 2 0.0021857 61.161 By MS/MS By MS/MS 2 1 1.1883 1.1232 49.013 3 Median 0.79997 0.75249 56.64 2 0 Median 1.4665 1.2275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9534800 4635500 4899300 7707500 3696600 4010900 1827300 938970 888350 0 0 0 0 0 0 0 0 0 0 0 0 16196 569 16877 83892;83893;83894 85029;85030;85031;85032 85032 4 ISEIEDAAFLAR ITYGQKVMEKETEKKISEIEDAAFLAREKA EKKISEIEDAAFLAREKAKADAECYTAMKI K I S A R E 3 1 0 1 0 0 2 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 12 0 1333.6878 O94905;E5RHW4;O75477;B0QZ43 O94905 242 253 ERLIN2;ERLIN1 Erlin-2;Erlin-1 no no 2 3.6707E-06 136.33 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 1.186 1.1183 15.233 6 Median 0.93727 0.93772 NaN 1 0 Median 1.383 1.2009 NaN 1 0 Median 1.0591 1.1494 NaN 1 0 Median 1.2861 1.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3268 1.1699 27.276 2 0 Median 37768000 18493000 19275000 25760000 13173000 12588000 4627000 1875100 2751900 6708300 3175100 3533200 191270 75948 115320 0 0 0 480990 194400 286590 16197 848;1675 16878 83895;83896;83897;83898;83899;83900 85033;85034;85035;85036 85035 4 ISEKEEVTTR RVRALELENDRLLLKISEKEEVTTREVSGI RLLLKISEKEEVTTREVSGIKALYESELAD K I S T R E 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 10 1 1190.6143 Q03252 Q03252 78 87 LMNB2 Lamin-B2 yes yes 2;3 0.00036374 83 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 7 3 0.85985 0.93693 8.3054 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0019 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83971 0.92213 3.8095 4 0 Median 1.1678 1.0601 NaN 1 0 Median 30058000 9697500 20361000 0 0 0 0 0 0 10505000 2836800 7668000 194470 0 194470 14194000 5852900 8340700 5165200 1007700 4157500 16198 2709 16879 83901;83902;83903;83904;83905;83906;83907;83908;83909;83910;83911;83912;83913 85037;85038;85039;85040;85041;85042;85043;85044;85045;85046 85038 10 ISELDAFLKEPALNEANLSNLK CTKTENLLGSYFPKKISELDAFLKEPALNE LKEPALNEANLSNLKAPLDIPVPDPVKEKE K I S L K A 3 0 3 1 0 0 3 0 0 1 5 2 0 1 1 2 0 0 0 0 0 0 22 1 2428.285 Q06323 Q06323 37 58 PSME1 Proteasome activator complex subunit 1 yes yes 3 0.070754 7.2761 By MS/MS 2 0.77463 0.70433 22.212 2 Median NaN NaN NaN 0 0 Median 0.77463 0.70433 22.212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3382100 1716700 1665400 0 0 0 3382100 1716700 1665400 0 0 0 0 0 0 0 0 0 0 0 0 16199 2724 16880 83914;83915 85047 85047 1 ISELGAGNGGVVFK QKQKVGELKDDDFEKISELGAGNGGVVFKV KISELGAGNGGVVFKVSHKPSGLVMARKLI K I S F K V 1 0 1 0 0 0 1 4 0 1 1 1 0 1 0 1 0 0 0 2 0 0 14 0 1346.7194 Q02750 Q02750 71 84 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 2 6.6679E-06 102.52 By MS/MS By MS/MS By matching 1 1 1 1.0224 0.8627 29.899 3 Median 0.91074 0.84192 NaN 1 1 Median 1.6728 1.4298 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0224 0.8627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22683000 10619000 12063000 15358000 7923900 7433800 6012600 2076900 3935600 0 0 0 1312400 618640 693730 0 0 0 0 0 0 16200 2700 16881 83916;83917;83918 85048;85049 85049 2 ISELGAGNGGVVTK QKAKVGELKDDDFERISELGAGNGGVVTKV RISELGAGNGGVVTKVQHRPSGLIMARKLI R I S T K V 1 0 1 0 0 0 1 4 0 1 1 1 0 0 0 1 1 0 0 2 0 0 14 0 1300.6987 P36507 P36507 75 88 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 2 0.00023853 76.332 By MS/MS By MS/MS 1 1 0.98601 0.885 2.9401 2 Median 0.92787 0.86679 NaN 1 0 Median 1.0478 0.90359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8145200 3890400 4254800 6082500 2902700 3179900 2062700 987780 1074900 0 0 0 0 0 0 0 0 0 0 0 0 16201 2256 16882 83919;83920 85050;85051 85050 2 ISELGSQLSDEAVEDGLFHEFKR SAPGGGDGAEYKTLKISELGSQLSDEAVED SDEAVEDGLFHEFKRFGDVSVKISHLSGSG K I S K R F 1 1 0 2 0 1 4 2 1 1 3 1 0 2 0 3 0 0 0 1 0 0 23 1 2605.266 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 130 152 RBM15 Putative RNA-binding protein 15 yes no 4 0.010805 17.503 By MS/MS By matching 1 1 0.87443 0.98196 5.5242 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89913 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8504 0.94435 NaN 1 0 Median NaN NaN NaN 0 0 Median 5469000 2763200 2705900 0 0 0 0 0 0 4148700 2122100 2026600 0 0 0 1320300 641050 679260 0 0 0 16202 60 16883 83921;83922 85052 85052 1 ISELPDNMLSTSR VVYLEPCAVTRSTVKISELPDNMLSTSRKD VKISELPDNMLSTSRKDKSSMLAELEYLPT K I S S R K 0 1 1 1 0 0 1 0 0 1 2 0 1 0 1 3 1 0 0 0 0 0 13 0 1461.7133 Q8IWI9;H3BP52;H3BTF4 Q8IWI9 483 495 MGA MAX gene-associated protein yes no 2 0.00091964 62.303 By MS/MS 1 0.72451 0.78702 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72451 0.78702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3813700 2341300 1472500 0 0 0 0 0 0 3813700 2341300 1472500 0 0 0 0 0 0 0 0 0 16203 3325 16884 83923 85053 85053 1 ISELQWSVMDQEMR SLAQAGETINALKGRISELQWSVMDQEMRV RISELQWSVMDQEMRVKRLESEKQELQEQL R I S M R V 0 1 0 1 0 2 2 0 0 1 1 0 2 0 0 2 0 1 0 1 0 0 14 0 1750.8018 Q9Y6D9;C9JIR0 Q9Y6D9 166 179 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.0010403 51.092 By MS/MS 1 1.1119 1.1026 NaN 1 Median 1.1119 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1498200 778040 720140 1498200 778040 720140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16204 4490 16885 83924 85054;85055 85055 2 ISELTSELTDER ERNELRLNSDRLESRISELTSELTDERNTG ESRISELTSELTDERNTGESASQLLDAETA R I S E R N 0 1 0 1 0 0 3 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1391.678 Q92614;A0A0D9SFK2 Q92614 1291 1302 MYO18A Unconventional myosin-XVIIIa yes no 2 0.0036523 68.657 By MS/MS 1 0.85002 0.71923 NaN 1 Median NaN NaN NaN 0 0 Median 0.85002 0.71923 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2706700 1357800 1348900 0 0 0 2706700 1357800 1348900 0 0 0 0 0 0 0 0 0 0 0 0 16205 267 16886 83925 85056 85056 1 ISENMNLQFENQMNK REVKKDLSQLQENLKISENMNLQFENQMNK ISENMNLQFENQMNKTIRNLSTVMDEIHTV K I S N K T 0 0 4 0 0 2 2 0 0 1 1 1 2 1 0 1 0 0 0 0 0 0 15 0 1838.8291 Q8IX12 Q8IX12 1099 1113 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 1.1161E-13 172.61 By MS/MS By MS/MS 6 3 0.94833 0.94703 10.969 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8955 0.95619 9.3047 5 3 Median 1.1013 0.93795 15.736 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104000000 52012000 51993000 0 0 0 0 0 0 95791000 48174000 47617000 8213700 3838000 4375700 0 0 0 0 0 0 16206 3331 16887;16888 83926;83927;83928;83929;83930;83931;83932;83933;83934 85057;85058;85059;85060;85061;85062;85063;85064;85065;85066;85067;85068 85065 1710;1711 12 ISEQFSAMFR TFIGNSTAIQELFKRISEQFSAMFRRKAFL ELFKRISEQFSAMFRRKAFLHWFTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 2 0 0 0 0 0 0 10 0 1214.5754 Q9BUF5 Q9BUF5 381 390 TUBB6 Tubulin beta-6 chain yes yes 2 0.00052436 92.062 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1.3772 1.2907 24.268 6 Median 1.2114 1.1676 NaN 1 0 Median 1.224 1.0616 NaN 1 0 Median 1.2707 1.2729 NaN 1 0 Median 1.4927 1.3087 NaN 1 0 Median 2.1157 2.1375 NaN 1 0 Median 1.5112 1.3322 NaN 1 0 Median 13305000 6107300 7197700 8482500 3882600 4599900 1648000 763370 884600 1566600 928610 638040 212400 99618 112780 1293400 383160 910280 102050 49915 52137 16207 3838 16889 83935;83936;83937;83938;83939;83940 85069 85069 1 ISEQFTAMFR TFIGNSTAIQELFKRISEQFTAMFRRKAFL ELFKRISEQFTAMFRRKAFLHWYTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 10 0 1228.591 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 381 390 TUBB3;TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 1.5306E-30 205.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 9 6 5 8 6 1.3014 1.1378 38.602 46 Median 1.1497 1.1091 16.957 12 0 Median 1.2435 1.0444 61.247 9 0 Median 1.2819 1.2668 10.156 6 0 Median 1.3237 1.1327 4.7218 5 0 Median 1.7892 1.7774 21.83 8 2 Median 1.3898 1.0993 20.433 6 0 Median 2376800000 1045800000 1331100000 999240000 445690000 553550000 784280000 354410000 429860000 259960000 114370000 145590000 74533000 31359000 43174000 156210000 56137000 100080000 102600000 43797000 58806000 16208 2634;1887;3849;2844;1849;216 16890;16891 83941;83942;83943;83944;83945;83946;83947;83948;83949;83950;83951;83952;83953;83954;83955;83956;83957;83958;83959;83960;83961;83962;83963;83964;83965;83966;83967;83968;83969;83970;83971;83972;83973;83974;83975;83976;83977;83978;83979;83980;83981;83982;83983;83984;83985;83986 85070;85071;85072;85073;85074;85075;85076;85077;85078;85079;85080;85081;85082;85083;85084;85085;85086;85087;85088;85089;85090;85091;85092;85093;85094;85095;85096;85097;85098;85099;85100;85101;85102;85103;85104;85105;85106;85107;85108;85109;85110;85111;85112;85113;85114;85115;85116;85117;85118;85119;85120;85121;85122;85123;85124;85125;85126;85127;85128;85129 85100 89 59 ISEQTYQLSR DSTLRRRSKPERKERISEQTYQLSRWTPII ERKERISEQTYQLSRWTPIIKDIMEDTIED R I S S R W 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 2 1 0 1 0 0 0 10 0 1223.6146 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764 A0A1B0GWF2 468 477 STXBP1 Syntaxin-binding protein 1 yes no 2 0.004098 68.557 By MS/MS 1 0.30197 0.26133 NaN 1 Median NaN NaN NaN 0 0 Median 0.30197 0.26133 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7021900 5187800 1834100 0 0 0 7021900 5187800 1834100 0 0 0 0 0 0 0 0 0 0 0 0 16209 271 16892 83987 85130 85130 1 ISESPSEIMESLTK TSNTLHYIHIEQLDKISESPSEIMESLTKM KISESPSEIMESLTKMYSIPKDKQMLLFTH K I S T K M 0 0 0 0 0 0 3 0 0 2 1 1 1 0 1 4 1 0 0 0 0 0 14 0 1549.7545 Q7Z6Z7 Q7Z6Z7 232 245 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 6.4816E-06 93.258 By MS/MS By MS/MS 1 2 0.90145 0.90178 29.984 3 Median 0.90145 0.90178 NaN 1 0 Median 0.88824 0.7825 40.791 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13612000 6648700 6963600 8443900 4092700 4351200 5168400 2556000 2612400 0 0 0 0 0 0 0 0 0 0 0 0 16210 3253 16893 83988;83989;83990 85131;85132;85133 85132 3 ISEVLQK LTEKAVKQGESEVSRISEVLQKLQNEILKD QGESEVSRISEVLQKLQNEILKDLSDGIHV R I S Q K L 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 7 0 815.47527 Q07065 Q07065 200 206 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.004405 100.67 By MS/MS By MS/MS 1 1 1.3987 1.2493 16.623 2 Median 1.1652 1.1107 NaN 1 0 Median 1.6789 1.4051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19637000 7721200 11916000 6305800 2806000 3499700 13332000 4915200 8416400 0 0 0 0 0 0 0 0 0 0 0 0 16211 2730 16894 83991;83992 85134;85135;85136;85137 85136 4 ISEVVELLK DRLDAIEDLMVVPDKISEVVELLKKLPDLE MVVPDKISEVVELLKKLPDLERLLSKIHNV K I S L K K 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 9 0 1028.6118 P52701;A0A494C0M1;A0A087WWJ1 P52701 805 813 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0061752 55.37 By MS/MS By matching By matching 1 2 1 1.2179 1.0727 4.5136 4 Median 1.1313 1.0826 NaN 1 0 Median 1.2179 1.0585 0.58875 2 0 Median NaN NaN NaN 0 0 Median 1.2782 1.164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7228200 3317300 3910900 2932800 1352300 1580500 3278600 1535400 1743200 0 0 0 1016700 429560 587140 0 0 0 0 0 0 16212 2453 16895 83993;83994;83995;83996 85138 85138 1 ISEYAADIFYSR SHDKLHPDKISIMKRISEYAADIFYSRYGG MKRISEYAADIFYSRYGGGPRLTVKALCKE R I S S R Y 2 1 0 1 0 0 1 0 0 2 0 0 0 1 0 2 0 0 2 0 0 0 12 0 1433.6827 Q86UV5;A0A0A0MRS6;E9PJH5 Q86UV5 530 541 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.00039387 140.07 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1503 1.0328 22.655 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1394 1.2315 19.114 2 1 Median 1.8055 1.5347 NaN 1 1 Median 0.81135 0.86462 NaN 1 0 Median 1.1503 0.97995 1.6481 2 0 Median 29027000 13774000 15253000 0 0 0 0 0 0 22891000 11076000 11815000 3754800 1388800 2366000 1650800 973180 677630 730190 335340 394850 16213 3281 16896 83997;83998;83999;84000;84001;84002;84003 85139;85140;85141;85142;85143 85140 5 ISEYSEAAITIR QTARWKVTSKEALQRISEYSEAAITIRGTY LQRISEYSEAAITIRGTYFPPGKEPKEGER R I S I R G 2 1 0 0 0 0 2 0 0 3 0 0 0 0 0 2 1 0 1 0 0 0 12 0 1351.6983 Q7L014;A0A0C4DG89 Q7L014 958 969 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 1.2456E-21 160.75 By MS/MS 1 1.2672 1.393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2672 1.393 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21829000 10605000 11224000 0 0 0 0 0 0 21829000 10605000 11224000 0 0 0 0 0 0 0 0 0 16214 3216 16897 84004 85144 85144 1 ISFDLAEYTADVDGVGTLR KPTEIYNLGAQSHVKISFDLAEYTADVDGV LAEYTADVDGVGTLRLLDAVKTCGLINSVK K I S L R L 2 1 0 3 0 0 1 2 0 1 2 0 0 1 0 1 2 0 1 2 0 0 19 0 2041.0004 O60547 O60547 116 134 GMDS GDP-mannose 4,6 dehydratase yes yes 2 1.372E-05 50.145 By MS/MS 1 1.1585 0.99966 NaN 1 Median NaN NaN NaN 0 0 Median 1.1585 0.99966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 983800 425560 558240 0 0 0 983800 425560 558240 0 0 0 0 0 0 0 0 0 0 0 0 16215 1620 16898 84005 85145;85146 85145 2 ISFDLSLAR KLLFEYLTLFGIDDKISFDLSLARGLDYYT FGIDDKISFDLSLARGLDYYTGVIYEAVLL K I S A R G 1 1 0 1 0 0 0 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 9 0 1020.5604 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2;P49590;A0A2R8Y5P7;A0A2R8Y3N3;A0A2R8Y6I1;D6RJE6;D6RB22;B4DQ67 P12081 318 326 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 2 0.025749 59.245 By MS/MS By MS/MS 1 2 1.062 1.0602 5.1092 2 Median 1.0258 1.0226 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0994 1.0992 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8184600 3770300 4414300 2116100 1099100 1017000 0 0 0 6068500 2671200 3397300 0 0 0 0 0 0 0 0 0 16216 1975 16899 84006;84007;84008 85147;85148;85149 85148 3 ISFEEFER MSGFSPELIDYLEGKISFEEFERRREERKT IDYLEGKISFEEFERRREERKTREKKSLQE K I S E R R 0 1 0 0 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 1055.4924 Q9Y5Q9;A0A494C1S7;F8WC64;H0YFI7 Q9Y5Q9 16 23 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 0.0046696 80.229 By MS/MS By matching 1 1 1.0871 1.058 8.7477 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93468 0.99453 NaN 1 0 Median 1.2644 1.1255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7432400 3677700 3754700 0 0 0 0 0 0 7298800 3625000 3673800 133640 52734 80908 0 0 0 0 0 0 16217 4467 16900 84009;84010 85150;85151 85150 2 ISFELMR EKRKKRDIPDYLCGKISFELMREPCITPSG IPDYLCGKISFELMREPCITPSGITYDRKD K I S M R E 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 7 0 894.46332 Q9UNE7;H3BTA3;H3BUD0 Q9UNE7 235 241 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.020057 60.788 By MS/MS By MS/MS 1 1 1.1984 1.1481 3.1806 2 Median 1.2571 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1424 1.1226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11211000 4974800 6236200 8534700 3773600 4761100 0 0 0 2676300 1201100 1475100 0 0 0 0 0 0 0 0 0 16218 4342 16901 84011;84012 85152;85153;85154;85155 85153 4 ISFLENNLEQLTK IDSDDTGGSAAQKQKISFLENNLEQLTKVH QKISFLENNLEQLTKVHKQLVRDNADLRCE K I S T K V 0 0 2 0 0 1 2 0 0 1 3 1 0 1 0 1 1 0 0 0 0 0 13 0 1547.8195 O60282;A0A0G2JMZ6;P33176 P33176 832 844 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 5.5411E-07 106.62 By MS/MS By MS/MS By matching By matching By matching 1 4 1 1 1 1.2159 1.0376 39.269 8 Median 1.0862 1.0469 NaN 1 0 Median 1.3692 1.1859 19.785 4 1 Median 0.4048 0.43625 NaN 1 0 Median 1.2291 1.0285 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7429 1.4854 NaN 1 0 Median 96824000 43906000 52918000 20861000 9642800 11219000 73646000 33097000 40549000 989990 603170 386820 918670 398960 519710 0 0 0 408110 163740 244370 16219 2221;1609 16902 84013;84014;84015;84016;84017;84018;84019;84020 85156;85157;85158;85159;85160 85157 5 ISFPWNEIR LGLHIYDPENRLTPKISFPWNEIRNISYSD NRLTPKISFPWNEIRNISYSDKEFTIKPLD K I S I R N 0 1 1 0 0 0 1 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 9 0 1160.5978 P35240 P35240 254 262 NF2 Merlin yes yes 2 0.01817 41.029 By MS/MS By matching 1 1 1.0193 0.97469 4.7599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88123 0.94243 NaN 1 0 Median 1.179 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2865500 1367000 1498600 0 0 0 0 0 0 2578700 1232700 1346100 286780 134290 152490 0 0 0 0 0 0 16220 2234 16903 84021;84022 85161 85161 1 ISFTGSTTTGK KEVGEAICTDPLVSKISFTGSTTTGKILLH LVSKISFTGSTTTGKILLHHAANSVKRVSM K I S G K I 0 0 0 0 0 0 0 2 0 1 0 1 0 1 0 2 4 0 0 0 0 0 11 0 1098.5557 P51649;C9J8Q5 P51649 280 290 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 2 0.00017674 114.5 By MS/MS By MS/MS 1 2 1.3019 1.4973 23.439 3 Median 1.0845 1.0205 NaN 1 0 Median 1.5144 1.5291 2.9676 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17062000 6842300 10219000 5865600 2608400 3257200 11196000 4233900 6962100 0 0 0 0 0 0 0 0 0 0 0 0 16221 2439 16904 84023;84024;84025 85162;85163 85162 2 ISFYQQIK SVSLVEETEERLVERISFYQQIKRNIGGKH EERLVERISFYQQIKRNIGGKHARLYQTLN R I S I K R 0 0 0 0 0 2 0 0 0 2 0 1 0 1 0 1 0 0 1 0 0 0 8 0 1025.5546 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4878 4885 SYNE2 Nesprin-2 yes no 2 0.0053943 76.035 By matching By MS/MS By matching 1 2 1 0.89513 0.86357 89.034 4 Median NaN NaN NaN 0 0 Median 1.1718 1.0308 NaN 1 0 Median 0.35248 0.38177 126.31 2 0 Median 0.91948 0.79966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20517000 13620000 6896800 0 0 0 3048200 1267500 1780700 16520000 11791000 4729200 948750 561790 386960 0 0 0 0 0 0 16222 3521 16905 84026;84027;84028;84029 85164 85164 1 ISGALFTNDKFQVSTNK PPKKRGLAPIECYNRISGALFTNDKFQVST GALFTNDKFQVSTNKLTFMDLELKLKDKNT R I S N K L 1 0 2 1 0 1 0 1 0 1 1 2 0 2 0 2 2 0 0 1 0 0 17 1 1868.9632 A6NHR9;J3KRK8 A6NHR9 509 525 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 8.9648E-05 46.159 By MS/MS By matching 1 1 1.0959 1.1436 3.3005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96053 1.1172 NaN 1 0 Median 1.2503 1.1706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47066000 23976000 23090000 0 0 0 0 0 0 45483000 23309000 22174000 1582700 667380 915290 0 0 0 0 0 0 16223 518 16906 84030;84031 85165;85166 85166 2 ISGASEKDIVHSGLAYTMER GGTIPIVPTAEFQDRISGASEKDIVHSGLA EKDIVHSGLAYTMERSARQIMRTAMKYNLG R I S E R S 2 1 0 1 0 0 2 2 1 2 1 1 1 0 0 3 1 0 1 1 0 0 20 1 2163.063 P00367 P00367 497 516 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 3 2.2252E-19 117.37 By MS/MS By matching 1 1 1.409 1.3404 33.161 2 Median 1.0652 1.0602 NaN 1 0 Median 1.8639 1.6946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21956000 9891300 12064000 21622000 9769800 11852000 333490 121560 211930 0 0 0 0 0 0 0 0 0 0 0 0 16224 1814 16907 84032;84033 85167;85168 85168 2 ISGETIFVTAPHEATAGIIGVNR HLYDLETGTCIYMNRISGETIFVTAPHEAT TAPHEATAGIIGVNRKGQVLSVCVEEENII R I S N R K 3 1 1 0 0 0 2 3 1 4 0 0 0 1 1 1 3 0 0 2 0 0 23 0 2352.2438 A0A087WVQ6;Q00610 A0A087WVQ6 302 324 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 2.1812E-34 138.73 By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 1.0537 0.9387 23.236 8 Median 1.0211 0.9581 6.3762 4 1 Median 1.0906 0.9372 0.25744 2 0 Median 0.77106 0.84792 NaN 1 0 Median 2.1193 1.7712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 160410000 77148000 83264000 116020000 56318000 59706000 35041000 16297000 18745000 9118100 4448400 4669700 229280 85483 143800 0 0 0 0 0 0 16225 44 16908 84034;84035;84036;84037;84038;84039;84040;84041 85169;85170;85171;85172;85173;85174;85175;85176;85177;85178;85179 85174 11 ISGETIFVTAPHEATAGIIGVNRK HLYDLETGTCIYMNRISGETIFVTAPHEAT APHEATAGIIGVNRKGQVLSVCVEEENIIP R I S R K G 3 1 1 0 0 0 2 3 1 4 0 1 0 1 1 1 3 0 0 2 0 0 24 1 2480.3387 A0A087WVQ6;Q00610 A0A087WVQ6 302 325 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 6.068E-12 52.853 By MS/MS 1 1.1028 1.1095 NaN 1 Median 1.1028 1.1095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8844500 4042900 4801600 8844500 4042900 4801600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16226 44 16909 84042 85180;85181 85181 2 ISGGSVVEMQGDEMTR ______________________________ SGGSVVEMQGDEMTRIIWELIKEKLIFPYV K I S T R I 0 1 0 1 0 1 2 3 0 1 0 0 2 0 0 2 1 0 0 2 0 0 16 0 1694.7604 O75874;C9J4N6;C9JJE5;C9JLU6 O75874 5 20 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes no 2 3.4417E-10 112.43 By MS/MS By matching 2 1 0.91113 0.87001 21.845 3 Median 0.82145 0.80288 11.356 2 0 Median 1.3346 1.1415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15478000 8073200 7404300 14129000 7522700 6606700 1348200 550550 797660 0 0 0 0 0 0 0 0 0 0 0 0 16227 1701 16910 84043;84044;84045 85182;85183;85184 85182 2 ISGIFLTNHIK IPYNAVLDLVNNKMRISGIFLTNHIKWVGC NKMRISGIFLTNHIKWVGCQGSRSELRGYP R I S I K W 0 0 1 0 0 0 0 1 1 3 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1241.7132 Q6ZRP7;H0Y430 Q6ZRP7 404 414 QSOX2 Sulfhydryl oxidase 2;Sulfhydryl oxidase yes no 3 0.0032195 37.995 By MS/MS By matching 1 1 1.2459 1.1669 1.157 2 Median 1.2057 1.1765 NaN 1 0 Median 1.2875 1.1574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3672000 1603200 2068900 2735900 1208100 1527800 936160 395080 541080 0 0 0 0 0 0 0 0 0 0 0 0 16228 3198 16911 84046;84047 85185;85186 85185 2 ISGLGLTPEQK AYKTMKEDEKRYNERISGLGLTPEQKQKKA YNERISGLGLTPEQKQKKAALSASEGEEVP R I S Q K Q 0 0 0 0 0 1 1 2 0 1 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1141.6343 O95831 O95831 99 109 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.0001181 120.99 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1.2275 1.0253 20.92 9 Median 0.88356 0.81427 13.837 2 1 Median 1.381 1.1458 15.289 4 1 Median 0.88011 0.90589 7.9776 2 0 Median 1.4443 1.2291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93360000 40847000 52513000 50584000 22921000 27663000 28899000 11528000 17371000 10215000 4930500 5284500 3661800 1467300 2194400 0 0 0 0 0 0 16229 1797 16912 84048;84049;84050;84051;84052;84053;84054;84055;84056;84057 85187;85188;85189;85190;85191;85192;85193 85187 7 ISGLIYEETR KPAIRRLARRGGVKRISGLIYEETRGVLKV GGVKRISGLIYEETRGVLKVFLENVIRDAV R I S T R G 0 1 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.6136 P62805 P62805 47 56 HIST1H4A Histone H4 yes yes 2 8.2927E-66 241.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 10 12 14 1.24 1.0339 18.539 47 Median 0.90806 0.86326 24.769 4 0 Median 1.4781 1.2479 29.428 4 1 Median 0.95457 0.9588 16.064 5 0 Median 1.4469 1.1913 14.221 10 2 Median 0.91499 0.94842 7.0796 11 1 Median 1.3143 1.0293 11.728 13 0 Median 30980000000 13638000000 17342000000 119120000 59080000 60041000 322870000 127670000 195200000 406740000 204210000 202530000 104050000 37159000 66891000 13070000000 6580800000 6488800000 16958000000 6628800000 10329000000 16230 2597 16913 84058;84059;84060;84061;84062;84063;84064;84065;84066;84067;84068;84069;84070;84071;84072;84073;84074;84075;84076;84077;84078;84079;84080;84081;84082;84083;84084;84085;84086;84087;84088;84089;84090;84091;84092;84093;84094;84095;84096;84097;84098;84099;84100;84101;84102;84103;84104;84105;84106;84107 85194;85195;85196;85197;85198;85199;85200;85201;85202;85203;85204;85205;85206;85207;85208;85209;85210;85211;85212;85213;85214;85215;85216;85217;85218;85219;85220;85221;85222;85223;85224;85225;85226;85227;85228;85229;85230;85231;85232;85233;85234;85235;85236;85237;85238;85239;85240;85241;85242;85243;85244;85245;85246;85247;85248;85249;85250;85251;85252;85253;85254;85255;85256;85257;85258;85259;85260;85261;85262;85263;85264;85265;85266;85267;85268;85269;85270;85271;85272;85273;85274;85275;85276;85277;85278;85279;85280;85281;85282;85283;85284;85285;85286;85287;85288;85289;85290;85291;85292;85293;85294;85295;85296;85297;85298;85299;85300;85301;85302;85303;85304;85305;85306;85307;85308;85309;85310;85311;85312;85313;85314;85315;85316;85317;85318;85319;85320;85321;85322;85323;85324;85325;85326;85327 85308 134 ISGLIYEETRGVLK KPAIRRLARRGGVKRISGLIYEETRGVLKV RISGLIYEETRGVLKVFLENVIRDAVTYTE R I S L K V 0 1 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 14 1 1576.8825 P62805 P62805 47 60 HIST1H4A Histone H4 yes yes 2;3 2.5226E-08 147.91 By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 9 4 1.0821 1.1277 23.903 17 Median 1.2725 1.2478 NaN 1 0 Median 2.2059 1.9476 16.321 2 0 Median 0.88108 0.91922 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99727 1.1277 8.6305 9 0 Median 1.1403 0.90904 19.034 4 0 Median 533830000 255680000 278160000 3635100 1324000 2311100 1868300 567920 1300300 2757800 1369600 1388200 0 0 0 454940000 226100000 228840000 70630000 26312000 44317000 16231 2597 16914 84108;84109;84110;84111;84112;84113;84114;84115;84116;84117;84118;84119;84120;84121;84122;84123;84124 85328;85329;85330;85331;85332;85333;85334;85335;85336;85337;85338;85339;85340;85341;85342;85343;85344;85345;85346;85347;85348 85339 21 ISGSILNELIGLVR FLTTLAKVYPSSLSKISGSILNELIGLVRS KISGSILNELIGLVRSPLLQGGALSAMLDF K I S V R S 0 1 1 0 0 0 1 2 0 3 3 0 0 0 0 2 0 0 0 1 0 0 14 0 1482.877 Q86VP6;A0A0C4DGH5 Q86VP6 730 743 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 3.4453E-08 105.86 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.1732 1.1288 31.743 6 Median 1.3185 1.2746 28.094 2 0 Median 1.2689 1.1315 NaN 1 0 Median 1.0271 1.0982 3.5485 2 0 Median NaN NaN NaN 0 0 Median 2.1968 2.3442 NaN 1 0 Median NaN NaN NaN 0 0 Median 17829000 8184300 9644900 12307000 5810600 6496800 151900 66738 85164 3905900 1883000 2022900 0 0 0 1464000 423930 1040000 0 0 0 16232 3288 16915 84125;84126;84127;84128;84129;84130 85349;85350;85351;85352;85353 85350 5 ISGSLVDTSYK DKYFKLPHASSKPPRISGSLVDTSYKTLRF KPPRISGSLVDTSYKTLRFAFRASLKTAIY R I S Y K T 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 3 1 0 1 1 0 0 11 0 1168.5976 Q9BTX1 Q9BTX1 618 628 NDC1 Nucleoporin NDC1 yes yes 2 2.4325E-06 129.85 By MS/MS By MS/MS 1 1 1.2055 1.228 4.4646 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1158 1.1898 NaN 1 1 Median 1.3023 1.2673 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30095000 15167000 14928000 0 0 0 0 0 0 26435000 13479000 12955000 3659900 1687700 1972300 0 0 0 0 0 0 16233 3831 16916 84131;84132 85354;85355 85354 2 ISGTVNIR LAQYNFILVVGEKEKISGTVNIRTRDNKVH VVGEKEKISGTVNIRTRDNKVHGERTISET K I S I R T 0 1 1 0 0 0 0 1 0 2 0 0 0 0 0 1 1 0 0 1 0 0 8 0 858.49232 P26639 P26639 682 689 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 1.1272 1.0035 36.735 8 Median 1.2383 1.1714 NaN 1 0 Median 1.0672 1.0238 10.303 3 0 Plateau 1.1327 1.1544 NaN 1 0 Median 1.2535 1.0726 14.684 2 0 Median NaN NaN NaN 0 0 Median 0.47354 0.38801 NaN 1 0 Median 66966000 29791000 37175000 15816000 6558800 9256800 26755000 12236000 14519000 10553000 4681400 5871100 13495000 6090800 7404000 0 0 0 348120 223460 124660 16234 2147 16917 84133;84134;84135;84136;84137;84138;84139;84140 85356;85357;85358;85359;85360;85361;85362;85363;85364;85365 85361 10 ISGVQVNAK RTGGRLGKVKGPTFRISGVQVNAKLVISHE KGPTFRISGVQVNAKLVISHEEELIPLHKS R I S A K L 1 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 2 0 0 9 0 914.51853 O14646 O14646 1204 1212 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.010073 48.561 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1.2851 1.216 7.256 5 Median 1.114 1.1323 NaN 1 0 Median 1.4223 1.3737 NaN 1 0 Median 1.0509 1.216 NaN 1 0 Median 1.2851 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4868 1.2744 NaN 1 0 Median 9367000 4356400 5010600 1357200 617040 740150 624560 272090 352470 4133200 1933100 2200200 2078200 1015500 1062700 0 0 0 1173800 518700 655060 16235 1486 16918 84141;84142;84143;84144;84145 85366 85366 1 ISGWTQALPDMVVSHLFGK VNPCAEGWMDWAASKISGWTQALPDMVVSH TQALPDMVVSHLFGKEEMQSNVEVVHTYRQ K I S G K E 1 0 0 1 0 1 0 2 1 1 2 1 1 1 1 2 1 1 0 2 0 0 19 0 2085.0717 Q92597 Q92597 180 198 NDRG1 Protein NDRG1 yes yes 2 8.6121E-07 60.448 By MS/MS 1 1.1858 1.0095 NaN 1 Median NaN NaN NaN 0 0 Median 1.1858 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1036900 452100 584780 0 0 0 1036900 452100 584780 0 0 0 0 0 0 0 0 0 0 0 0 16236 3540 16919 84146 85367;85368 85367 2 ISHGEVLEWQK RCGIIHVRGPMPPNRISHGEVLEWQKTFEE PPNRISHGEVLEWQKTFEEKLTPLLSVRES R I S Q K T 0 0 0 0 0 1 2 1 1 1 1 1 0 0 0 1 0 1 0 1 0 0 11 0 1324.6776 Q9BXP5;H7C3A1 Q9BXP5 654 664 SRRT Serrate RNA effector molecule homolog yes no 2;3 5.3639E-05 114.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 1 3 1.1238 1.0947 24.062 13 Median 1.2375 1.2038 13.583 2 0 Median 1.0239 0.87914 NaN 1 0 Median 1.0222 1.103 2.5135 4 0 Median 1.2353 1.0803 2.2477 2 0 Median 1.1282 1.1539 NaN 1 0 Median 1.2567 1.0292 46.561 3 1 Median 101550000 47403000 54151000 12709000 5973400 6735400 4272300 1915300 2357000 56442000 26599000 29843000 14788000 6663200 8125200 9882400 4470500 5411900 3460000 1781100 1678800 16237 3879 16920 84147;84148;84149;84150;84151;84152;84153;84154;84155;84156;84157;84158;84159 85369;85370;85371;85372;85373;85374;85375;85376;85377;85378;85379;85380;85381;85382;85383;85384;85385 85381 17 ISHLFFHK KIINYRDDEKSFSRRISHLFFHKENDWGFS EKSFSRRISHLFFHKENDWGFSNFMAWSEV R I S H K E 0 0 0 0 0 0 0 0 2 1 1 1 0 2 0 1 0 0 0 0 0 0 8 0 1027.5603 Q93009;H3BND8;F5H2X1;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q93009 154 161 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0035089 91.9 By MS/MS 1 3.2111 2.7209 NaN 1 Median NaN NaN NaN 0 0 Median 3.2111 2.7209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8892800 2765800 6127000 0 0 0 8892800 2765800 6127000 0 0 0 0 0 0 0 0 0 0 0 0 16238 3574 16921 84160 85386;85387 85386 2 ISHLPLVEELR MYPKYDRITNHIHVRISHLPLVEELRSLRQ IHVRISHLPLVEELRSLRQLHLNQLIRTSG R I S L R S 0 1 0 0 0 0 2 0 1 1 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1304.7452 P49736;H0Y8E6 P49736 285 295 MCM2 DNA replication licensing factor MCM2 yes no 2;3 4.165E-05 107.06 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.86735 0.81689 12.336 7 Median 0.85117 0.81952 2.7058 2 0 Median 1.0024 0.84628 NaN 1 0 Median 0.68039 0.73692 14.57 2 0 Median 1.0408 0.90158 16.596 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49136000 26268000 22868000 33138000 17513000 15626000 4974500 2194900 2779500 10219000 6174300 4045000 803490 386330 417160 0 0 0 0 0 0 16239 2393 16922 84161;84162;84163;84164;84165;84166;84167 85388;85389;85390;85391;85392;85393;85394;85395;85396;85397 85390 10 ISHLVLPVQPENALK YNHMDPDKLNGLWSRISHLVLPVQPENALK ISHLVLPVQPENALKRGICL__________ R I S L K R 1 0 1 0 0 1 1 0 1 1 3 1 0 0 2 1 0 0 0 2 0 0 15 0 1656.9563 A0A0A0MSK5;Q5JTV8;J3KN66 J3KN66 580 594 TOR1AIP1 Torsin-1A-interacting protein 1 no no 3 0.0026122 30.961 By MS/MS 3 0.8453 0.82056 27.105 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8453 0.82056 27.105 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13175000 7398800 5776500 0 0 0 0 0 0 13175000 7398800 5776500 0 0 0 0 0 0 0 0 0 16240 182;1302 16923 84168;84169;84170 85398;85399 85399 2 ISHLVLPVQPENALKR YNHMDPDKLNGLWSRISHLVLPVQPENALK SHLVLPVQPENALKRGICL___________ R I S K R G 1 1 1 0 0 1 1 0 1 1 3 1 0 0 2 1 0 0 0 2 0 0 16 1 1813.0574 A0A0A0MSK5;Q5JTV8;J3KN66 J3KN66 580 595 TOR1AIP1 Torsin-1A-interacting protein 1 no no 3;4 3.2126E-05 63.037 By MS/MS By MS/MS By matching 3 1 1 0.78848 0.86165 8.7223 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77048 0.86165 4.7921 3 2 Median NaN NaN NaN 0 0 Median 0.94713 0.98271 NaN 1 0 Median 0.85582 0.78817 NaN 1 0 Median 26725000 14804000 11921000 0 0 0 0 0 0 22445000 12739000 9706500 0 0 0 3884900 1901800 1983100 394980 163350 231630 16241 182;1302 16924 84171;84172;84173;84174;84175 85400;85401;85402;85403 85401 4 ISHQNYIAYQK DPDFNQSNGGTKRQKISHQNYIAYQKQVIR KRQKISHQNYIAYQKQVIRRSMRHRKVRGE K I S Q K Q 1 0 1 0 0 2 0 0 1 2 0 1 0 0 0 1 0 0 2 0 0 0 11 0 1363.6884 Q86UV5 Q86UV5 919 929 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2;3 0.00020344 102.61 By matching By MS/MS By MS/MS 1 3 2 1.1244 1.0239 20.273 5 Median NaN NaN NaN 0 0 Median 0.87825 0.76965 NaN 1 0 Median 1.133 1.225 1.4405 2 1 Median 1.1185 0.95529 9.8145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17695000 8232700 9462400 0 0 0 1610200 1001500 608740 10232000 4482000 5749600 5853200 2749200 3104000 0 0 0 0 0 0 16242 3281 16925 84176;84177;84178;84179;84180;84181 85404;85405;85406;85407;85408;85409;85410;85411 85409 8 ISHVVVEDTVVSDK AQLEEVTSVLEANSKISHVVVEDTVVSDKC KISHVVVEDTVVSDKCFPLEDTLLGKEKST K I S D K C 0 0 0 2 0 0 1 0 1 1 0 1 0 0 0 2 1 0 0 5 0 0 14 0 1525.7988 Q7Z5K2 Q7Z5K2 119 132 WAPAL Wings apart-like protein homolog yes yes 2;3 1.9264E-05 87.083 By MS/MS By MS/MS 3 1 0.92607 0.91606 17.975 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89487 0.96929 18.106 3 3 Median 0.95836 0.82461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21979000 10065000 11913000 0 0 0 0 0 0 18122000 8313600 9808800 3856100 1751700 2104400 0 0 0 0 0 0 16243 3249 16926 84182;84183;84184;84185 85412;85413;85414;85415 85415 4 ISIEGNIAAGK CPSFSASSEGTRIKKISIEGNIAAGKSTFV RIKKISIEGNIAAGKSTFVNILKQLCEDWE K I S G K S 2 0 1 0 0 0 1 2 0 3 0 1 0 0 0 1 0 0 0 0 0 0 11 0 1071.5924 P27707;D6RFG8;D6RCP9 P27707 24 34 DCK Deoxycytidine kinase yes no 2 0.00014501 84.213 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.2441 1.1613 35.723 7 Median 1.1634 1.0699 11.586 2 0 Median 1.4527 1.2196 33.067 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61051 0.64963 NaN 1 0 Median 2.1132 1.8207 NaN 1 0 Median 101820000 44830000 56993000 65072000 28981000 36092000 32984000 14197000 18787000 0 0 0 0 0 0 1414900 869350 545600 2351900 782840 1569000 16244 826 16927 84186;84187;84188;84189;84190;84191;84192 85416;85417;85418;85419;85420 85416 5 ISIEMHGTLEDQLSHLR VIGPWIQTKMEEIGRISIEMHGTLEDQLSH IEMHGTLEDQLSHLRQYEKSIVNYKPKIDQ R I S L R Q 0 1 0 1 0 1 2 1 2 2 3 0 1 0 0 2 1 0 0 0 0 0 17 0 1977.9942 P12814;H9KV75;H0YJW3;H0YJ11 P12814 656 672 ACTN1 Alpha-actinin-1 yes no 4 0.013181 21.233 By MS/MS By matching 1 1 1.1946 1.1218 28.747 2 Median 1.3772 1.3747 NaN 1 0 Median 1.0363 0.91548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1731000 721050 1010000 1523000 609070 913960 208010 111970 96038 0 0 0 0 0 0 0 0 0 0 0 0 16245 1983 16928 84193;84194 85421 85421 1 ISIGGGSCAISGGYGSR GFGSRSLYGLGGSKRISIGGGSCAISGGYG IGGGSCAISGGYGSRAGGSYGFGGAGSGFG R I S S R A 1 1 0 0 1 0 0 6 0 3 0 0 0 0 0 4 0 0 1 0 0 0 17 0 1597.7519 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 70 86 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 3.4149E-18 122.46 By MS/MS By MS/MS By MS/MS 2 1 1 0.22418 0.21225 176.28 2 Median NaN NaN NaN 0 0 Median 0.072795 0.061024 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69036 0.7382 NaN 1 1 Median NaN NaN NaN 0 0 Median 27280000 26502000 778050 0 0 0 3614100 3594400 19659 20638000 20638000 0 0 0 0 3027900 2269500 758390 0 0 0 + 16246 741;748;766 16929 84195;84196;84197;84198 85422;85423;85424;85425 85422 4 ISIGNVVK ______________________________ MVALSLKISIGNVVKTMQFEPSTMVYDACR K I S V K T 0 0 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 0 2 0 0 8 0 828.5069 Q9Y490 Q9Y490 8 15 TLN1 Talin-1 yes yes 2 0.010787 58.194 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 3 2 2 1.2508 1.1983 21.235 13 Median 1.3708 1.2626 6.3262 2 0 Median 1.2341 1.0903 14.914 4 0 Median 1.1789 1.1983 30.718 3 0 Median 1.2806 1.1375 18.995 2 0 Median NaN NaN NaN 0 0 Median 1.304 1.0894 46.829 2 0 Median 34799000 15753000 19046000 7047400 3006600 4040800 16550000 7219400 9330200 7927900 4065400 3862400 1782200 820850 961380 0 0 0 1492100 641000 851120 16247 4441 16930 84199;84200;84201;84202;84203;84204;84205;84206;84207;84208;84209;84210;84211 85426;85427;85428;85429;85430;85431;85432 85429 7 ISIMAER FRKVIEEQLEPAVEKISIMAERLANQFAIY QLEPAVEKISIMAERLANQFAIYKPVTDFF K I S E R L 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 7 0 818.43202 P42704 P42704 1237 1243 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0030389 105.39 By MS/MS 1 1.4635 1.2104 NaN 1 Median NaN NaN NaN 0 0 Median 1.4635 1.2104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32074000 12383000 19691000 0 0 0 32074000 12383000 19691000 0 0 0 0 0 0 0 0 0 0 0 0 16248 2315 16931 84212 85433;85434 85434 2 ISIPDVDLDLKGPK GPKFKMPEINIKAPKISIPDVDLDLKGPKV KISIPDVDLDLKGPKVKGDFDVSVPKVEGT K I S P K V 0 0 0 3 0 0 0 1 0 2 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1508.845 Q09666 Q09666 4849 4862 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.1958E-05 85.42 By MS/MS By matching By MS/MS By matching 3 2 3 1 0.84553 0.94688 11.394 9 Median 0.88193 0.96052 4.5715 3 0 Median 0.79932 0.76054 4.805 2 0 Median 0.90794 1.0295 6.5092 3 0 Plateau 0.97335 0.98887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52722000 28603000 24119000 32590000 18279000 14310000 6554900 3545000 3009800 13464000 6729500 6734600 113520 48898 64624 0 0 0 0 0 0 16249 2749 16932 84213;84214;84215;84216;84217;84218;84219;84220;84221 85435;85436;85437;85438;85439;85440;85441 85436 7 ISIPDVGLHLK GPKFKMPEMSIKPQKISIPDVGLHLKGPKM KPQKISIPDVGLHLKGPKMKGDYDVTVPKV K I S L K G 0 0 0 1 0 0 0 1 1 2 2 1 0 0 1 1 0 0 0 1 0 0 11 0 1190.7023 Q09666 Q09666 1451 1461 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0023898 57.348 By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 1.0078 0.94528 54.708 5 Median 1.0144 1.0174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0078 1.0822 NaN 1 0 Median 1.0243 0.93874 0.98191 2 0 Median NaN NaN NaN 0 0 Median 0.33815 0.29421 NaN 1 0 Median 32728000 11863000 20864000 17044000 8324400 8719500 0 0 0 14271000 2965600 11306000 1357400 538630 818810 0 0 0 54804 34478 20327 16250 2749 16933 84222;84223;84224;84225;84226;84227;84228 85442;85443;85444;85445;85446 85443 5 ISIPDVGLHLKGPK GPKFKMPEMSIKPQKISIPDVGLHLKGPKM KISIPDVGLHLKGPKMKGDYDVTVPKVEGE K I S P K M 0 0 0 1 0 0 0 2 1 2 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1472.8715 Q09666 Q09666 1451 1464 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0003848 49.929 By matching By MS/MS By matching 1 1 1 0.83405 0.90749 11.276 3 Median 0.83405 0.90749 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86511 0.98339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74759 0.7871 NaN 1 0 Median NaN NaN NaN 0 0 Median 10539000 5582500 4956200 5407300 2747300 2660000 0 0 0 2915700 1572400 1343300 0 0 0 2215600 1262700 952900 0 0 0 16251 2749 16934 84229;84230;84231 85447 85447 1 ISISTSGGSFR GYGSRSLYNLGGSKRISISTSGGSFRNRFG GSKRISISTSGGSFRNRFGAGAGGGYGFGG R I S F R N 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 4 1 0 0 0 0 0 11 0 1110.5669 CON__P13647;P13647;F8VV57 CON__P13647 74 84 KRT5 Keratin, type II cytoskeletal 5 yes no 2 6.7653E-48 191.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 9 5 10 5 3 0.084166 0.074464 144.98 38 Median 0.15363 0.14528 157.26 6 6 Median 0.18531 0.15789 150.21 9 9 Median 0.12299 0.13115 111.75 5 5 Median 0.023323 0.019464 75.653 10 10 Median 0.10108 0.10344 111.68 5 5 Median 0.018387 0.015182 135.34 3 3 Median 470990000 414680000 56318000 67611000 54200000 13411000 133500000 108870000 24637000 57561000 52648000 4912900 81741000 78014000 3727000 66844000 58185000 8659600 63734000 62764000 970750 + 16252 757 16935 84232;84233;84234;84235;84236;84237;84238;84239;84240;84241;84242;84243;84244;84245;84246;84247;84248;84249;84250;84251;84252;84253;84254;84255;84256;84257;84258;84259;84260;84261;84262;84263;84264;84265;84266;84267;84268;84269;84270 85448;85449;85450;85451;85452;85453;85454;85455;85456;85457;85458;85459;85460;85461;85462;85463;85464;85465;85466;85467;85468;85469;85470;85471;85472;85473;85474;85475;85476;85477;85478;85479;85480;85481;85482;85483;85484;85485;85486;85487;85488 85455 41 ISITEGIER SSPIAAIFDTENLEKISITEGIERGIVDSI TENLEKISITEGIERGIVDSITGQRLLEAQ K I S E R G 0 1 0 0 0 0 2 1 0 3 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1016.5502 P15924 P15924 2631 2639 DSP Desmoplakin yes yes 2 0.00042096 130.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 3 1.2529 1.0269 25.285 11 Median 0.92405 0.89156 6.8513 2 0 Median 1.3729 1.1549 11.556 3 0 Median NaN NaN NaN 0 0 Median 1.3228 1.1313 10.283 2 0 Median 0.87748 0.89812 NaN 1 0 Median 1.1556 0.96002 48.545 3 2 Median 72025000 35470000 36556000 17087000 8304300 8782500 14803000 6354000 8448600 0 0 0 4153000 1781700 2371200 16137000 9314200 6822500 19846000 9715300 10131000 16253 2021 16936 84271;84272;84273;84274;84275;84276;84277;84278;84279;84280;84281 85489;85490;85491;85492;85493;85494;85495 85489 7 ISITLVSVPLIVR FVVAYAIHKLFAPVRISITLVSVPLIVRYF VRISITLVSVPLIVRYFRKVGFFKPPAAKP R I S V R Y 0 1 0 0 0 0 0 0 0 3 2 0 0 0 1 2 1 0 0 3 0 0 13 0 1408.9017 Q96KR6 Q96KR6 165 177 FAM210B Protein FAM210B yes yes 2 3.4514E-05 91.584 By MS/MS By matching 1 1 1.0431 0.9409 27.836 2 Median NaN NaN NaN 0 0 Median 1.4308 1.1456 NaN 1 0 Median 0.76044 0.77279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17021000 6725500 10296000 0 0 0 16829000 6611300 10217000 192640 114190 78443 0 0 0 0 0 0 0 0 0 16254 3698 16937 84282;84283 85496 85496 1 ISKESEDFIVEQYK DIRRYLLFARQFKPKISKESEDFIVEQYKH KISKESEDFIVEQYKHLRQRDGSGVTKSSW K I S Y K H 0 0 0 1 0 1 3 0 0 2 0 2 0 1 0 2 0 0 1 1 0 0 14 1 1713.8461 Q14566 Q14566 586 599 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 9.3377E-07 112.13 By MS/MS By matching 2 1 0.96446 1.008 40.004 3 Median 0.89237 0.93396 10.795 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6477 1.8438 NaN 1 0 Median NaN NaN NaN 0 0 Median 28960000 13938000 15022000 26826000 12988000 13838000 0 0 0 0 0 0 0 0 0 2134300 950320 1183900 0 0 0 16255 2881 16938 84284;84285;84286 85497;85498;85499 85499 3 ISKLEVTEIVKPSPK EEKGVDKDFESSSMKISKLEVTEIVKPSPK ISKLEVTEIVKPSPKRKMEPDTEKMDRTPE K I S P K R 0 0 0 0 0 0 2 0 0 2 1 3 0 0 2 2 1 0 0 2 0 0 15 2 1666.9869 Q7Z6E9;A0A2R8Y880 Q7Z6E9 1167 1181 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 4 0.0014375 35.757 By MS/MS 1 0.87249 1.0108 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87249 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3045600 1761800 1283800 0 0 0 0 0 0 3045600 1761800 1283800 0 0 0 0 0 0 0 0 0 16256 3251 16939 84287 85500 85500 1 ISKPAPYWEGTAVIDGEFK RVSVADHSLHLSKAKISKPAPYWEGTAVID APYWEGTAVIDGEFKELKLTDYRGKYLVFF K I S F K E 2 0 0 1 0 0 2 2 0 2 0 2 0 1 2 1 1 1 1 1 0 0 19 1 2107.0626 Q13162;A6NG45 Q13162 81 99 PRDX4 Peroxiredoxin-4 yes no 2;3 2.2353E-07 81.647 By MS/MS By MS/MS By matching 2 2 1 0.8606 0.82411 10.055 5 Median 0.81037 0.82076 0.57698 2 0 Median 1.0294 0.94103 2.3235 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8606 0.7469 NaN 1 0 Median 261330000 135290000 126040000 247190000 128540000 118650000 13917000 6671700 7244900 0 0 0 0 0 0 0 0 0 227780 80869 146910 16257 2793 16940 84288;84289;84290;84291;84292 85501;85502;85503;85504;85505;85506;85507;85508 85505 8 ISKPAPYWEGTAVIDGEFKELK RVSVADHSLHLSKAKISKPAPYWEGTAVID WEGTAVIDGEFKELKLTDYRGKYLVFFFYP K I S L K L 2 0 0 1 0 0 3 2 0 2 1 3 0 1 2 1 1 1 1 1 0 0 22 2 2477.2842 Q13162;A6NG45 Q13162 81 102 PRDX4 Peroxiredoxin-4 yes no 4 0.029689 13.321 By MS/MS By MS/MS By matching 1 1 1 0.89567 0.90587 6.252 3 Median 0.77947 0.82317 NaN 1 0 Median 0.94611 0.92583 NaN 1 0 Median 0.89567 0.90587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22037000 11910000 10127000 14685000 7943000 6741900 4058100 2151900 1906200 3294000 1815000 1478900 0 0 0 0 0 0 0 0 0 16258 2793 16941 84293;84294;84295 85509;85510 85509 2 ISLADIAQK VIKTGVRMISLSYSRISLADIAQKLQLDSP SLSYSRISLADIAQKLQLDSPEDAEFIVAK R I S Q K L 2 0 0 1 0 1 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 957.5495 O43242 O43242 417 425 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0005315 117.04 By MS/MS 1 1.1858 1.1072 NaN 1 Median 1.1858 1.1072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21790000 9375700 12415000 21790000 9375700 12415000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16259 1560 16942 84296 85511;85512 85512 2 ISLDQIDLLSTK SYTGQDYSTQGNVGKISLDQIDLLSTKSFP VGKISLDQIDLLSTKSFPPCMRQLHKALRE K I S T K S 0 0 0 2 0 1 0 0 0 2 3 1 0 0 0 2 1 0 0 0 0 0 12 0 1344.75 P49643;A0A096LP51 P49643 271 282 PRIM2 DNA primase large subunit yes no 2 3.5722E-06 143.24 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.2941 1.1405 14.025 7 Median 0.99754 0.96491 10.242 2 0 Median 1.3151 1.1183 2.7738 2 0 Median 1.2785 1.299 NaN 1 0 Median 1.5111 1.3237 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4738 1.2666 NaN 1 0 Median 25832000 11724000 14108000 4977400 2490700 2486700 16518000 7257000 9261300 3771700 1738100 2033600 409660 165090 244570 0 0 0 155300 73512 81786 16260 2389 16943 84297;84298;84299;84300;84301;84302;84303 85513;85514;85515;85516;85517;85518;85519;85520 85517 8 ISLEDIQAFEK QDRDWEAYWRLLFKKISLEDIQAFEKTYKG LFKKISLEDIQAFEKTYKGSEEELADIKQA K I S E K T 1 0 0 1 0 1 2 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1291.666 Q8WXX5 Q8WXX5 108 118 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.00020354 96.89 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.97686 0.87871 9.2063 4 Median NaN NaN NaN 0 0 Median 1.0394 0.87308 NaN 1 1 Median 0.91807 0.88437 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72082 0.74261 NaN 1 0 Median 1.1263 0.9116 NaN 1 0 Median 39117000 18971000 20146000 0 0 0 6618600 3020000 3598600 20221000 10198000 10023000 0 0 0 675480 264210 411270 11602000 5489500 6113000 16261 3522 16944 84304;84305;84306;84307 85521;85522;85523 85522 3 ISLEYSELQDK RLQDLATQLQEKHHRISLEYSELQDKVTSA KHHRISLEYSELQDKVTSAETKVLEMETTV R I S D K V 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 11 0 1323.6558 O75150;H3BP71;H3BS50 O75150 254 264 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.0020677 78.655 By MS/MS 2 1.4303 1.2246 4.9824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4303 1.2246 4.9824 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5769900 2293200 3476700 0 0 0 0 0 0 0 0 0 5769900 2293200 3476700 0 0 0 0 0 0 16262 1648 16945 84308;84309 85524;85525 85524 2 ISLEYSELQDKVTSAETK RLQDLATQLQEKHHRISLEYSELQDKVTSA EYSELQDKVTSAETKVLEMETTVEDLQWDI R I S T K V 1 0 0 1 0 1 3 0 0 1 2 2 0 0 0 3 2 0 1 1 0 0 18 1 2040.0263 O75150;H3BP71;H3BS50 O75150 254 271 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 1.2015E-06 78.661 By matching By MS/MS 1 1 0.97994 1.0852 5.0869 2 Median 0.99473 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96537 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28593000 14937000 13656000 4979600 2599400 2380200 0 0 0 23613000 12337000 11276000 0 0 0 0 0 0 0 0 0 16263 1648 16946 84310;84311 85526 85526 1 ISLGLPVGAVINCADNTGAK MSKRGRGGSSGAKFRISLGLPVGAVINCAD PVGAVINCADNTGAKNLYIISVKGIKGRLN R I S A K N 3 0 2 1 1 0 0 3 0 2 2 1 0 0 1 1 1 0 0 2 0 0 20 0 1969.0303 P62829;C9JD32;J3KT29;B9ZVP7 P62829 16 35 RPL23 60S ribosomal protein L23 yes no 2 3.6711E-11 97.551 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0026 0.9274 32.307 5 Median 0.98125 0.9274 NaN 1 0 Median 1.003 0.84551 2.374 2 0 Median 1.0026 0.95296 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5496 1.8166 NaN 1 0 Median NaN NaN NaN 0 0 Median 46301000 22340000 23961000 6561800 3339600 3222200 10408000 5057000 5351100 28440000 13636000 14804000 0 0 0 891400 307380 584020 0 0 0 16264 2598 16947 84312;84313;84314;84315;84316 85527;85528;85529;85530;85531;85532;85533 85530 7 ISLGMPVGPNAHK RLKEKKPGDLSDELRISLGMPVGPNAHKVP LRISLGMPVGPNAHKVPPPWLIAMQRYGPP R I S H K V 1 0 1 0 0 0 0 2 1 1 1 1 1 0 2 1 0 0 0 1 0 0 13 0 1319.702 Q13435;E9PPJ0;H0YEX5 Q13435 615 627 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 0.00018466 73.233 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 2 0.76145 0.78115 11.21 11 Median NaN NaN NaN 0 0 Median 0.76145 0.7111 NaN 1 0 Median 0.67268 0.71625 12.266 2 0 Median 0.85839 0.73756 14.158 2 0 Median 0.7341 0.75672 12.387 4 0 Median 1.0214 0.84644 8.0523 2 0 Median 126610000 71429000 55185000 0 0 0 818060 378090 439970 57610000 33337000 24272000 8313200 4308600 4004600 53774000 30472000 23302000 6099000 2933000 3166000 16265 2817 16948 84317;84318;84319;84320;84321;84322;84323;84324;84325;84326;84327 85534;85535;85536;85537;85538;85539;85540;85541;85542;85543;85544;85545;85546;85547;85548 85534 15 ISLIQIFR DLTGIFMHGKIPTLKISLIQIFRAHLWQKI GKIPTLKISLIQIFRAHLWQKIHESIVMDL K I S F R A 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 8 0 988.60695 Q6P2Q9;I3L3Z8 Q6P2Q9 1571 1578 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0071131 68.422 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 1 1 1.1306 1.1236 5.81 8 Median 1.1817 1.1651 1.588 2 0 Median 1.2701 1.1015 NaN 1 0 Median 0.98565 1.0779 1.9496 3 0 Median 1.4475 1.2711 NaN 1 0 Median 1.1018 1.1457 NaN 1 0 Median NaN NaN NaN 0 0 Median 23209000 11028000 12181000 4000200 1760500 2239700 263650 116880 146770 10352000 5127900 5224300 2265200 935970 1329300 6327900 3087000 3240900 0 0 0 16266 3157 16949 84328;84329;84330;84331;84332;84333;84334;84335 85549;85550;85551;85552;85553;85554;85555;85556 85552 8 ISLNTLTLNVK GGRVFVLPCIQQIQRISLNTLTLNVKSEKV QIQRISLNTLTLNVKSEKVYTRHGVPISVT R I S V K S 0 0 2 0 0 0 0 0 0 1 3 1 0 0 0 1 2 0 0 1 0 0 11 0 1214.7234 O75955;A2AB10;A2AB12;A0A0G2JJQ6;A2AB13;A2AB11 O75955 41 51 FLOT1 Flotillin-1 yes no 2 2.2409E-12 143.03 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.561 1.4593 43.259 5 Median 0.58817 0.55958 NaN 1 0 Median 1.6974 1.4368 2.1963 2 2 Median 1.561 1.5362 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5188 1.4679 NaN 1 0 Median NaN NaN NaN 0 0 Median 46269000 18565000 27704000 3715900 2474100 1241800 36548000 13401000 23146000 5414500 2466000 2948500 0 0 0 590860 223830 367020 0 0 0 16267 1712 16950 84336;84337;84338;84339;84340 85557;85558;85559 85559 3 ISLPEAMQLLQDR DGPPHQVLVVPLHSRISLPEAMQLLQDRDT SRISLPEAMQLLQDRDTGTVHLNELGNTQN R I S D R D 1 1 0 1 0 2 1 0 0 1 3 0 1 0 1 1 0 0 0 0 0 0 13 0 1512.797 Q2NL82;I3L1Q5 Q2NL82 94 106 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 0.0017637 50.284 By MS/MS By matching 1 1 0.79957 0.72927 3.5261 2 Median 0.70985 0.71131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90063 0.74768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1521500 897020 624480 1348900 807300 541640 0 0 0 0 0 0 172570 89725 82847 0 0 0 0 0 0 16268 3004 16951 84341;84342 85560;85561 85560 2 ISLPGQMAGTPITPLK YLHRIPTRPFEEGKKISLPGQMAGTPITPL SLPGQMAGTPITPLKDGFTEVQLSSVNPPS K I S L K D 1 0 0 0 0 1 0 2 0 2 2 1 1 0 3 1 2 0 0 0 0 0 16 0 1622.9066 Q9H8Y8 Q9H8Y8 213 228 GORASP2 Golgi reassembly-stacking protein 2 yes yes 2 0.0073173 30.331 By MS/MS By matching By matching 1 2 1 0.64011 0.57366 44.058 4 Median 0.58212 0.56517 NaN 1 0 Median 0.90046 0.88906 59.85 2 0 Median NaN NaN NaN 0 0 Median 0.61916 0.54348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2663000 1489400 1173600 1315900 837690 478170 1243700 577230 666450 0 0 0 103450 74455 29000 0 0 0 0 0 0 16269 3991 16952 84343;84344;84345;84346 85562 85562 1 ISLPIEDYFNK SKGCFVFKPNSKKRKISLPIEDYFNKGKNE KKRKISLPIEDYFNKGKNEPEDSKLRFETY K I S N K G 0 0 1 1 0 0 1 0 0 2 1 1 0 1 1 1 0 0 1 0 0 0 11 0 1337.6867 Q9UBD5 Q9UBD5 22 32 ORC3 Origin recognition complex subunit 3 yes yes 2 0.0041947 48.423 By MS/MS By matching 1 1 0.71209 0.68822 18.219 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74489 0.78284 NaN 1 0 Median 0.68073 0.60503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5569900 3215800 2354100 0 0 0 0 0 0 5371100 3089800 2281400 198780 125990 72791 0 0 0 0 0 0 16270 4236 16953 84347;84348 85563;85564 85564 2 ISLPLPNFSSLNLR EIATYRKLLEGEESRISLPLPNFSSLNLRE RISLPLPNFSSLNLRETNLDSLPLVDTHSK R I S L R E 0 1 2 0 0 0 0 0 0 1 4 0 0 1 2 3 0 0 0 0 0 0 14 0 1569.8879 P08670;B0YJC4 P08670 411 424 VIM Vimentin yes no 2 4.2641E-08 136.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 4 14 0.773 0.68665 26.584 28 Median 0.83335 0.81204 11.899 4 0 Median 1.261 1.0782 29.677 2 0 Median 0.80893 0.79832 3.9613 2 0 Median 0.9246 0.80484 13.124 2 0 Median 0.85542 0.8774 7.2062 4 0 Median 0.7292 0.57695 15.661 14 3 Median 276750000 144420000 132330000 38808000 21784000 17025000 57634000 26657000 30977000 44627000 23459000 21168000 1798700 917950 880750 95719000 49591000 46128000 38158000 22010000 16148000 16271 1907 16954 84349;84350;84351;84352;84353;84354;84355;84356;84357;84358;84359;84360;84361;84362;84363;84364;84365;84366;84367;84368;84369;84370;84371;84372;84373;84374;84375;84376 85565;85566;85567;85568;85569;85570;85571;85572;85573;85574;85575;85576;85577;85578;85579;85580;85581;85582;85583;85584;85585;85586;85587;85588;85589;85590;85591;85592;85593;85594;85595;85596;85597;85598;85599;85600;85601;85602;85603;85604;85605;85606;85607;85608;85609;85610;85611;85612;85613;85614;85615;85616;85617;85618;85619;85620;85621;85622;85623;85624 85579 60 ISLPVILMDETLK QITPLNVTQWLMVLKISLPVILMDETLKFV LKISLPVILMDETLKFVARNYLEPGKECVQ K I S L K F 0 0 0 1 0 0 1 0 0 2 3 1 1 0 1 1 1 0 0 1 0 0 13 0 1470.8368 P16615;H7C5W9;A0A0C4DH86 P16615 972 984 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.00064759 68.536 By MS/MS By matching 2 1 1.1946 1.0536 24.631 3 Plateau NaN NaN NaN 0 0 Median 1.1837 1.0353 2.4746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81879 0.67648 NaN 1 0 Median 10353000 4610700 5742800 0 0 0 10328000 4598300 5729200 0 0 0 0 0 0 0 0 0 25902 12336 13566 16272 2031 16955 84377;84378;84379 85625;85626 85626 2 ISLQAIQQLVR QELQRKFHEAQLSEKISLQAIQQLVRKSYQ LSEKISLQAIQQLVRKSYQALALWKLLCEH K I S V R K 1 1 0 0 0 3 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1267.7612 O75694;E9PF10 O75694 776 786 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.003026 50.607 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 4 3 4 2 1 2 1.2044 1.1403 25.745 16 Median 1.4866 1.4907 30.25 4 0 Linear 1.2464 1.0359 20.34 3 0 Median 1.1428 1.2658 30.334 4 0 Median 1.433 1.2059 1.9115 2 0 Median 1.2536 1.334 NaN 1 0 Median 1.4188 1.166 3.799 2 0 Median 52179000 23511000 28668000 5848500 2669300 3179200 22453000 9941600 12511000 20479000 9521300 10958000 2052900 828630 1224200 909530 366930 542610 436520 183000 253520 16273 1692 16956 84380;84381;84382;84383;84384;84385;84386;84387;84388;84389;84390;84391;84392;84393;84394;84395 85627;85628;85629;85630;85631 85628 5 ISLQQELSR DEQIKTIEKTSEEERISLQQELSRVKQEVV TSEEERISLQQELSRVKQEVVDVMKKSSEE R I S S R V 0 1 0 0 0 2 1 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1072.5877 Q13439;H0Y6I0 Q13439 453 461 GOLGA4 Golgin subfamily A member 4 yes no 2 0.0032716 82.75 By MS/MS 1 2.2249 1.8629 NaN 1 Median NaN NaN NaN 0 0 Median 2.2249 1.8629 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5888900 2045200 3843700 0 0 0 5888900 2045200 3843700 0 0 0 0 0 0 0 0 0 0 0 0 16274 1156 16957 84396 85632 85632 1 ISLSNESNK EYAQNIWNVEPSDLKISLSNESNKVNGN__ EPSDLKISLSNESNKVNGN___________ K I S N K V 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 3 0 0 0 0 0 0 9 0 990.49819 P06737 P06737 835 843 PYGL Glycogen phosphorylase, liver form yes yes 2 0.010372 48.283 By MS/MS 1 1.216 1.0796 NaN 1 Median NaN NaN NaN 0 0 Median 1.216 1.0796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1611600 815380 796230 0 0 0 1611600 815380 796230 0 0 0 0 0 0 0 0 0 0 0 0 16275 1874 16958 84397 85633;85634 85633 2 ISLSTLQQQLGQPEK YGKVVDLAPLHLDARISLSTLQQQLGQPEK ISLSTLQQQLGQPEKALEALEPMYDPDTLA R I S E K A 0 0 0 0 0 4 1 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1668.9046 Q9Y5Q9;A0A494C1S7;H7C0C0 Q9Y5Q9 494 508 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 3.0359E-09 130.01 By matching By matching By MS/MS 2 1 1 0.92182 0.89625 16.51 4 Median 1.0361 1.0487 9.2266 2 0 Median 0.87267 0.7852 NaN 1 0 Median 0.75405 0.8176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22039000 12108000 9930700 1975000 823570 1151400 492850 286700 206150 19571000 10998000 8573100 0 0 0 0 0 0 0 0 0 16276 4467 16959 84398;84399;84400;84401 85635;85636 85636 2 ISMPDFDLHLK GPKLKMPEMNIKAPKISMPDFDLHLKGPKV KAPKISMPDFDLHLKGPKVKGDVDVSLPKV K I S L K G 0 0 0 2 0 0 0 0 1 1 2 1 1 1 1 1 0 0 0 0 0 0 11 0 1314.6642 Q09666 Q09666 2579 2589 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 0.0044878 72.928 By MS/MS By matching By MS/MS By MS/MS 3 3 5 5 1.1759 1.1126 15.161 16 Median 1.0697 1.0733 8.3069 3 0 Median 1.2204 1.0866 10.884 3 0 Median 1.1978 1.2803 12.461 5 1 Median 1.2073 1.126 15.856 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116720000 52103000 64612000 48745000 21538000 27207000 35497000 16177000 19320000 30263000 13464000 16798000 2211000 924050 1286900 0 0 0 0 0 0 16277 2749 16960;16961 84402;84403;84404;84405;84406;84407;84408;84409;84410;84411;84412;84413;84414;84415;84416;84417 85637;85638;85639;85640;85641;85642;85643;85644;85645 85638 1442 8 ISMPDFDLHLKGPK GPKLKMPEMNIKAPKISMPDFDLHLKGPKV KISMPDFDLHLKGPKVKGDVDVSLPKVEGD K I S P K V 0 0 0 2 0 0 0 1 1 1 2 2 1 1 2 1 0 0 0 0 0 0 14 1 1596.8334 Q09666 Q09666 2579 2592 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3;4 3.7241E-05 91.855 By MS/MS By MS/MS 7 4 0.81486 0.88715 32.931 11 Median 0.78234 0.80754 34.755 7 2 Median NaN NaN NaN 0 0 Median 0.83874 0.9503 33.61 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166210000 94559000 71650000 101010000 57015000 43994000 0 0 0 65199000 37544000 27655000 0 0 0 0 0 0 0 0 0 16278 2749 16962;16963 84418;84419;84420;84421;84422;84423;84424;84425;84426;84427;84428 85646;85647;85648;85649;85650;85651;85652;85653;85654;85655 85652 1442 10 ISMPDFDLNLKGPK GPKFKMPEMNIKAPKISMPDFDLNLKGPKM KISMPDFDLNLKGPKMKGDVVVSLPKVEGD K I S P K M 0 0 1 2 0 0 0 1 0 1 2 2 1 1 2 1 0 0 0 0 0 0 14 1 1573.8174 Q09666 Q09666 3671 3684 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 7.0991E-05 85.958 By MS/MS By MS/MS 2 2 0.92528 1.0286 26.299 4 Median 0.86791 0.94543 5.3482 2 1 Median NaN NaN NaN 0 0 Median 1.173 1.3296 29.728 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51436000 23575000 27861000 25537000 13946000 11591000 0 0 0 25898000 9629200 16269000 0 0 0 0 0 0 0 0 0 16279 2749 16964;16965 84429;84430;84431;84432 85656;85657;85658;85659;85660 85657 1443 5 ISMPDIDFNLK GPKFKMPEMNIKAPKISMPDIDFNLKGPKV KAPKISMPDIDFNLKGPKVKGDVDVSLPKV K I S L K G 0 0 1 2 0 0 0 0 0 2 1 1 1 1 1 1 0 0 0 0 0 0 11 0 1291.6482 Q09666 Q09666 4385 4395 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.011012 38.303 By MS/MS By matching By matching 1 1 2 0.99785 0.92505 3.0442 4 Median 0.94553 0.93878 NaN 1 0 Median 1.0537 0.92672 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99785 0.89946 3.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12593000 5986000 6607400 3835600 1853600 1982000 8418600 3959900 4458700 0 0 0 339150 172510 166640 0 0 0 0 0 0 16280 2749 16966 84433;84434;84435;84436 85661;85662 85662 2 ISMPDIDFNLKGPK GPKFKMPEMNIKAPKISMPDIDFNLKGPKV KISMPDIDFNLKGPKVKGDVDVSLPKVEGD K I S P K V 0 0 1 2 0 0 0 1 0 2 1 2 1 1 2 1 0 0 0 0 0 0 14 1 1573.8174 Q09666 Q09666 4385 4398 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00042012 49.31 By MS/MS By MS/MS 1 1 0.89098 0.9904 11.919 2 Median 0.83573 0.91035 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94988 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21609000 11737000 9871800 13306000 7563800 5742000 0 0 0 8303000 4173100 4129900 0 0 0 0 0 0 0 0 0 16281 2749 16967 84437;84438 85663;85664;85665 85665 3 ISMPDIDLNLTGPK SPKFKMPEMHFKTPKISMPDIDLNLTGPKI KISMPDIDLNLTGPKIKGDVDVTGPKVEGD K I S P K I 0 0 1 2 0 0 0 1 0 2 2 1 1 0 2 1 1 0 0 0 0 0 14 0 1512.7858 Q09666 Q09666 2835 2848 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.3418E-05 87.184 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.84932 0.79653 11.139 7 Median 0.77869 0.78112 4.8477 2 2 Median 0.88559 0.77959 NaN 1 0 Median 0.92213 0.95511 4.5197 2 0 Median 0.81174 0.75954 6.7236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58461000 31204000 27256000 37615000 20310000 17305000 8805000 4551900 4253100 11098000 5829200 5268500 943280 513310 429970 0 0 0 0 0 0 16282 2749 16968;16969 84439;84440;84441;84442;84443;84444;84445 85666;85667;85668;85669;85670;85671;85672 85672 1444 7 ISMPDLDLHLK TPKFKMPDMHFKAPKISMPDLDLHLKSPKA KAPKISMPDLDLHLKSPKAKGEVDVDVPKL K I S L K S 0 0 0 2 0 0 0 0 1 1 3 1 1 0 1 1 0 0 0 0 0 0 11 0 1280.6799 Q09666 Q09666 2386 2396 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00094301 61.78 By MS/MS By matching By MS/MS By matching 2 1 3 1 1.0076 1.0759 21.658 7 Median 0.88482 0.88559 12.199 2 0 Median 1.8862 1.6624 NaN 1 0 Median 1.0076 1.0785 2.1482 3 1 Median 1.1217 1.0513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45379000 23027000 22352000 18947000 9936700 9010700 180400 65525 114880 25422000 12620000 12802000 829390 405400 423990 0 0 0 0 0 0 16283 2749 16970;16971 84446;84447;84448;84449;84450;84451;84452 85673;85674;85675;85676;85677;85678;85679;85680 85674 1445 8 ISMPDLDLNLK GPKFKMPEMNIKAPKISMPDLDLNLKGPKM KAPKISMPDLDLNLKGPKMKGEVDVSLANV K I S L K G 0 0 1 2 0 0 0 0 0 1 3 1 1 0 1 1 0 0 0 0 0 0 11 0 1257.6639 Q09666 Q09666 3219 3229 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00015771 99.442 By MS/MS By MS/MS By MS/MS By matching 3 5 3 3 1.0634 0.94974 39.641 14 Median 0.91167 0.91409 15.549 3 1 Median 1.2195 1.0717 6.8949 5 0 Median 0.6183 0.70553 96.388 3 0 Median 1.104 0.98333 12.886 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111510000 54372000 57134000 19174000 10028000 9146100 79597000 36370000 43227000 10095000 6631600 3463700 2639600 1342400 1297200 0 0 0 0 0 0 16284 2749 16972 84453;84454;84455;84456;84457;84458;84459;84460;84461;84462;84463;84464;84465;84466 85681;85682;85683;85684;85685;85686;85687;85688 85685 8 ISMPDLDLNLKGPK GPKFKMPEMNIKAPKISMPDLDLNLKGPKM KISMPDLDLNLKGPKMKGEVDVSLANVEGD K I S P K M 0 0 1 2 0 0 0 1 0 1 3 2 1 0 2 1 0 0 0 0 0 0 14 1 1539.8331 Q09666 Q09666 3219 3232 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 2.5269E-08 111.39 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 4 2 1 1 0.82114 0.87718 19.266 13 Median 0.80612 0.8499 5.4087 3 0 Median 1.0474 1.007 6.67 2 0 Median 0.80487 0.9157 11.168 4 1 Median 0.87086 0.84561 14.71 2 0 Median 0.86876 0.92549 NaN 1 0 Median 0.53893 0.49422 NaN 1 0 Median 308510000 164130000 144380000 199400000 108070000 91329000 22109000 11661000 10449000 83742000 42909000 40833000 369740 148780 220960 2799500 1288900 1510500 87178 47934 39243 16285 2749 16973 84467;84468;84469;84470;84471;84472;84473;84474;84475;84476;84477;84478;84479 85689;85690;85691;85692;85693;85694;85695;85696;85697;85698;85699;85700;85701;85702;85703;85704;85705;85706 85690 18 ISMPDVDFNLK GPKFKMPEMHFKTPKISMPDVDFNLKGPKI KTPKISMPDVDFNLKGPKIKGDVDVSAPKL K I S L K G 0 0 1 2 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 0 0 11 0 1277.6326 Q09666 Q09666 2312 2322 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0030977 50.473 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.95175 0.93557 24.365 5 Median 0.95175 0.95241 NaN 1 0 Median 1.0736 0.93557 NaN 1 0 Median 1.1063 1.1951 NaN 1 0 Median 0.94003 0.84492 NaN 1 0 Median 0.59212 0.61151 NaN 1 0 Median NaN NaN NaN 0 0 Median 17453000 9035300 8418000 9106200 4957200 4149000 3293700 1587500 1706300 3964000 1862200 2101800 244660 124640 120020 844710 503770 340950 0 0 0 16286 2749 16974 84480;84481;84482;84483;84484 85707;85708;85709;85710;85711 85708 5 ISMPDVDFNLKGPK GPKFKMPEMHFKTPKISMPDVDFNLKGPKI KISMPDVDFNLKGPKIKGDVDVSAPKLEGE K I S P K I 0 0 1 2 0 0 0 1 0 1 1 2 1 1 2 1 0 0 0 1 0 0 14 1 1559.8018 Q09666 Q09666 2312 2325 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00025961 81.865 By MS/MS By MS/MS 3 4 0.92013 1.0277 62.963 7 Median 0.91832 1.0002 70.984 3 1 Median NaN NaN NaN 0 0 Median 1.0686 1.2116 46.43 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59932000 33265000 26667000 29494000 18460000 11035000 0 0 0 30438000 14806000 15632000 0 0 0 0 0 0 0 0 0 16287 2749 16975;16976 84485;84486;84487;84488;84489;84490;84491 85712;85713;85714;85715;85716;85717;85718 85716 1446 7 ISMPDVDLHLK GPKFKMPEMNIKVPKISMPDVDLHLKGPNV KVPKISMPDVDLHLKGPNVKGEYDVTMPKV K I S L K G 0 0 0 2 0 0 0 0 1 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1266.6642 Q09666 Q09666 818 828 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 0.00013804 87.258 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 9 1 1.0317 1.0309 13.558 23 Median 0.948 0.9518 6.9846 4 0 Median 1.1418 1.0177 6.2654 4 0 Median 1.0203 1.1019 12.735 5 0 Median 1.0317 0.93126 13.82 9 1 Median 1.0969 1.1607 NaN 1 0 Median NaN NaN NaN 0 0 Median 274230000 135450000 138770000 96380000 47298000 49082000 61231000 29449000 31781000 85632000 43384000 42249000 29209000 14439000 14770000 1774800 882730 892100 0 0 0 16288 2749 16977;16978 84492;84493;84494;84495;84496;84497;84498;84499;84500;84501;84502;84503;84504;84505;84506;84507;84508;84509;84510;84511;84512;84513;84514 85719;85720;85721;85722;85723;85724;85725;85726;85727;85728;85729;85730;85731;85732;85733;85734;85735;85736;85737;85738;85739;85740;85741;85742;85743;85744;85745;85746 85734 1447 28 ISMPDVDLHLKGPK GPKFKMPEMHFKTPKISMPDVDLHLKGPKV KISMPDVDLHLKGPKVKGDVDVSVPKVEGE K I S P K V 0 0 0 2 0 0 0 1 1 1 2 2 1 0 2 1 0 0 0 1 0 0 14 1 1548.8334 Q09666 Q09666 1195 1208 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 6.5214E-05 77.894 By MS/MS By MS/MS By matching 4 2 2 0.86365 0.93339 20.722 8 Median 0.86051 0.93663 14.781 4 0 Median NaN NaN NaN 0 0 Median 0.82528 0.93339 4.9797 2 1 Median 1.1408 1.159 37.848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162950000 87536000 75415000 87314000 47606000 39709000 0 0 0 74497000 39447000 35050000 1140200 483630 656570 0 0 0 0 0 0 16289 2749 16979;16980 84515;84516;84517;84518;84519;84520;84521;84522 85747;85748;85749;85750;85751;85752;85753;85754;85755;85756;85757;85758 85755 1448 12 ISMPDVDLHMK GPKFKMPEMNIKAPKISMPDVDLHMKGPKV KAPKISMPDVDLHMKGPKVKGEYDMTVPKL K I S M K G 0 0 0 2 0 0 0 0 1 1 1 1 2 0 1 1 0 0 0 1 0 0 11 0 1284.6206 Q09666 Q09666 946 956 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0018368 43.604 By MS/MS By matching By MS/MS By matching 3 1 2 1 0.92861 0.89749 14.059 6 Median 0.92988 0.9183 5.1577 3 1 Median 0.88775 0.77885 NaN 1 0 Median 1.0986 1.175 NaN 1 0 Median 0.92734 0.85197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37633000 19653000 17980000 24609000 13042000 11567000 1606400 1139100 467390 11031000 5287800 5742700 386570 184070 202510 0 0 0 0 0 0 16290 2749 16981 84523;84524;84525;84526;84527;84528;84529 85759;85760;85761;85762;85763 85760 5 ISMPDVDLHVK GPDVKLPDMSVKTPKISMPDVDLHVKGTKV KTPKISMPDVDLHVKGTKVKGEYDVTVPKL K I S V K G 0 0 0 2 0 0 0 0 1 1 1 1 1 0 1 1 0 0 0 2 0 0 11 0 1252.6486 Q09666 Q09666 697 707 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0022169 44.612 By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 0.99589 0.98454 15.73 8 Median 0.91023 0.88659 9.6 2 0 Median 1.0304 0.89714 18.367 2 0 Median 1.0518 1.146 2.2259 2 0 Median 1.1211 1.0427 19.463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36959000 18559000 18401000 17712000 8993700 8718300 2827700 1239200 1588500 14064000 7167800 6895800 2355900 1157900 1198100 0 0 0 0 0 0 16291 2749 16982;16983 84530;84531;84532;84533;84534;84535;84536;84537 85764;85765;85766;85767;85768;85769 85769 1449 6 ISMPDVDLNLK GPKFKMPEMHFKAPKISMPDVDLNLKGPKL KAPKISMPDVDLNLKGPKLKGDVDVSLPEV K I S L K G 0 0 1 2 0 0 0 0 0 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1243.6482 Q09666 Q09666 1323 1333 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.017604 35.944 By MS/MS By matching By matching 2 1 1 1.1 1.1032 16.517 4 Median NaN NaN NaN 0 0 Median 1.0943 0.96585 25.329 2 0 Median 1.011 1.1019 NaN 1 0 Median 1.1969 1.1046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21975000 10395000 11580000 0 0 0 18956000 9009900 9945800 2554600 1237500 1317100 464850 147720 317130 0 0 0 0 0 0 16292 2749 16984 84538;84539;84540;84541 85770;85771 85771 2 ISMPDVDLNLKGPK GPKFKMPEMHFKAPKISMPDVDLNLKGPKL KISMPDVDLNLKGPKLKGDVDVSLPEVEGE K I S P K L 0 0 1 2 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 1 0 0 14 1 1525.8174 Q09666 Q09666 1323 1336 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 6.4172E-05 77.078 By MS/MS By MS/MS 1 1 1.0261 1.1394 9.6282 2 Median 0.97765 1.0644 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0769 1.2197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39901000 19703000 20198000 22325000 11145000 11180000 0 0 0 17576000 8558100 9017700 0 0 0 0 0 0 0 0 0 16293 2749 16985 84542;84543 85772;85773;85774 85772 3 ISMPDVGLNLK GPKFKMPSMNIQTHKISMPDVGLNLKAPKL QTHKISMPDVGLNLKAPKLKTDVDVSLPKV K I S L K A 0 0 1 1 0 0 0 1 0 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1185.6427 Q09666 Q09666 1579 1589 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00017984 97.431 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 4 1 0.90144 0.90212 31.107 9 Median 0.89908 0.90212 NaN 1 0 Median 1.1367 1.0109 NaN 1 0 Median 0.88668 0.94688 22.001 2 0 Median 0.97183 0.94882 17.575 4 1 Median NaN NaN NaN 0 0 Median 0.48347 0.40115 NaN 1 0 Median 84487000 41944000 42544000 23689000 12178000 11511000 14586000 6669900 7915800 35738000 17907000 17830000 10055000 4917000 5137600 0 0 0 420730 271750 148980 16294 2749 16986;16987 84544;84545;84546;84547;84548;84549;84550;84551;84552 85775;85776;85777;85778;85779;85780;85781;85782;85783;85784;85785 85779 1450 11 ISMPDVGLNLKAPK GPKFKMPSMNIQTHKISMPDVGLNLKAPKL KISMPDVGLNLKAPKLKTDVDVSLPKVEGD K I S P K L 1 0 1 1 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 1 0 0 14 1 1481.8276 Q09666 Q09666 1579 1592 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00027825 57.434 By MS/MS By MS/MS 1 1 0.75484 0.8396 17.16 2 Median 0.68244 0.74367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83491 0.94792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14000000 7506200 6494100 8666800 4689000 3977900 0 0 0 5333400 2817200 2516200 0 0 0 0 0 0 0 0 0 16295 2749 16988 84553;84554 85786;85787;85788 85786 3 ISMPDVNLNLK GPKFKMPEMHFKTPKISMPDVNLNLKGPKV KTPKISMPDVNLNLKGPKVKGDMDVSVPKV K I S L K G 0 0 2 1 0 0 0 0 0 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1242.6642 Q09666 Q09666 2184 2194 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00011372 128.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 3 1 2 1.0336 1.0129 55.842 9 Median 1.0169 1.0201 NaN 1 0 Median 1.1089 0.97577 NaN 1 0 Median 1.0904 1.165 NaN 1 0 Median 1.0336 1.0129 5.1728 3 0 Median 5.4968 3.9331 NaN 1 0 Median 0.6785 0.59546 27.571 2 0 Median 59809000 28370000 31439000 18412000 9015600 9396800 8649700 4122000 4527700 14160000 6541300 7618400 15916000 8159500 7756600 2124800 259720 1865100 546550 272230 274320 16296 2749 16989;16990 84555;84556;84557;84558;84559;84560;84561;84562;84563 85789;85790;85791;85792;85793;85794;85795;85796;85797;85798;85799 85792 1451 11 ISMPDVNLNLKGPK GPKFKMPEMHFKTPKISMPDVNLNLKGPKV KISMPDVNLNLKGPKVKGDMDVSVPKVEGE K I S P K V 0 0 2 1 0 0 0 1 0 1 2 2 1 0 2 1 0 0 0 1 0 0 14 1 1524.8334 Q09666 Q09666 2184 2197 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 3.0957E-06 90.731 By MS/MS By MS/MS By matching 2 2 1 0.73037 0.8303 34.645 5 Median 0.73895 0.80482 14.194 2 0 Median NaN NaN NaN 0 0 Median 0.88455 1.004 26.862 2 0 Median NaN NaN NaN 0 0 Median 0.41455 0.46886 NaN 1 0 Median NaN NaN NaN 0 0 Median 47302000 24857000 22445000 30417000 16681000 13736000 0 0 0 15944000 7386800 8557100 0 0 0 940930 789100 151830 0 0 0 16297 2749 16991 84564;84565;84566;84567;84568 85800;85801;85802;85803;85804;85805 85801 6 ISMPEIDLNLK GPKLKMPDMHVNMPKISMPEIDLNLKGSKL NMPKISMPEIDLNLKGSKLKGDVDVSGPKL K I S L K G 0 0 1 1 0 0 1 0 0 2 2 1 1 0 1 1 0 0 0 0 0 0 11 0 1271.6795 Q09666 Q09666 3293 3303 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00015771 90.15 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.94625 0.89843 12.48 8 Median 0.87082 0.84954 7.7321 2 0 Median 0.98471 0.88569 22.403 2 0 Median 0.91431 0.99567 14.698 2 0 Median 0.99963 0.93461 5.4192 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47940000 22638000 25302000 11556000 5884500 5671200 21002000 9159000 11843000 11717000 5812400 5904800 3664900 1781800 1883100 0 0 0 0 0 0 16298 2749 16992;16993 84569;84570;84571;84572;84573;84574;84575;84576 85806;85807;85808;85809;85810;85811 85808 1452 6 ISMPEIDLNLKGSK GPKLKMPDMHVNMPKISMPEIDLNLKGSKL KISMPEIDLNLKGSKLKGDVDVSGPKLEGD K I S S K L 0 0 1 1 0 0 1 1 0 2 2 2 1 0 1 2 0 0 0 0 0 0 14 1 1543.828 Q09666 Q09666 3293 3306 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0018633 37.092 By MS/MS 1 0.66485 0.72465 NaN 1 Median 0.66485 0.72465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6913300 3859600 3053700 6913300 3859600 3053700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16299 2749 16994 84577 85812 85812 1 ISMPEVDLNLK GPKFKMPDLHLKAPKISMPEVDLNLKGPKM KAPKISMPEVDLNLKGPKMKGDVDVSLPKV K I S L K G 0 0 1 1 0 0 1 0 0 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1257.6639 Q09666 Q09666 4129 4139 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00013666 85.676 By MS/MS By MS/MS By matching By MS/MS 1 3 1 5 1.0209 0.99187 12.81 10 Median 0.80135 0.79846 NaN 1 0 Median 1.0761 0.95718 17.052 3 0 Median 0.94468 1.0479 NaN 1 0 Median 1.0271 1.0071 10.213 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53030000 25034000 27996000 5980300 2791600 3188600 33730000 15803000 17927000 1188800 511370 677430 12131000 5927900 6202900 0 0 0 0 0 0 16300 2749 16995;16996 84578;84579;84580;84581;84582;84583;84584;84585;84586;84587 85813;85814;85815;85816;85817;85818;85819;85820;85821 85816 1453 9 ISMPEVDLNLKGPK GPKFKMPDLHLKAPKISMPEVDLNLKGPKM KISMPEVDLNLKGPKMKGDVDVSLPKVEGD K I S P K M 0 0 1 1 0 0 1 1 0 1 2 2 1 0 2 1 0 0 0 1 0 0 14 1 1539.8331 Q09666 Q09666 4129 4142 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 2.7356E-06 91.62 By MS/MS By MS/MS 2 5 0.79337 0.88856 15.25 7 Median 0.76596 0.83364 8.3026 2 1 Median NaN NaN NaN 0 0 Median 0.79337 0.89775 17.876 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158340000 84980000 73362000 65607000 36558000 29049000 0 0 0 92735000 48422000 44313000 0 0 0 0 0 0 0 0 0 16301 2749 16997;16998 84588;84589;84590;84591;84592;84593;84594 85822;85823;85824;85825;85826;85827;85828;85829;85830;85831;85832 85828 1453 11 ISMPGFKGEGPDVDVNLPK GPDWHLKMPKIKMPKISMPGFKGEGPDVDV GFKGEGPDVDVNLPKADIDVSGPKVDVECP K I S P K A 0 0 1 2 0 0 1 3 0 1 1 2 1 1 3 1 0 0 0 2 0 0 19 1 1999.0085 Q09666 Q09666 2774 2792 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00011782 51.798 By MS/MS 1 1.086 1.1814 NaN 1 Median 1.086 1.1814 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52689000 26921000 25768000 52689000 26921000 25768000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16302 2749 16999 84595 85833;85834 85833 2 ISMPGFKGEGPEVDVNLPK GPDWHLKMPKIKMPKISMPGFKGEGPEVDV GFKGEGPEVDVNLPKADLDVSGPKVDVDVP K I S P K A 0 0 1 1 0 0 2 3 0 1 1 2 1 1 3 1 0 0 0 2 0 0 19 1 2013.0241 Q09666 Q09666 3158 3176 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 2.9945E-08 76.713 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 2 1 0.68831 0.73623 12.929 10 Median 0.65192 0.68695 2.9769 3 1 Median 0.88598 0.8435 8.3154 2 0 Median 0.70092 0.79279 5.1114 2 0 Median 0.73101 0.71168 25.812 2 0 Median 0.63434 0.67096 NaN 1 0 Median NaN NaN NaN 0 0 Median 217560000 125950000 91610000 130140000 78224000 51916000 8186500 4233600 3952900 76175000 41603000 34572000 979570 519520 460050 2083300 1374200 709110 0 0 0 16303 2749 17000;17001 84596;84597;84598;84599;84600;84601;84602;84603;84604;84605 85835;85836;85837;85838;85839;85840;85841;85842;85843;85844 85842 1454 10 ISMQDVDLSLGSPK GTKVKTPEMIIQKPKISMQDVDLSLGSPKL KISMQDVDLSLGSPKLKGDIKVSAPGVQGD K I S P K L 0 0 0 2 0 1 0 1 0 1 2 1 1 0 1 3 0 0 0 1 0 0 14 0 1488.7494 Q09666 Q09666 500 513 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 7.5556E-11 169.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 1 1.0343 1.0226 14.458 10 Median 1.141 1.1229 13.405 2 1 Median 1.1677 1.028 NaN 1 0 Median 1.0572 1.1294 13.399 3 1 Median 0.96361 0.93364 6.1861 3 2 Median 0.7536 0.78977 NaN 1 1 Median NaN NaN NaN 0 0 Median 156170000 74573000 81597000 52452000 25117000 27335000 8850100 3977500 4872600 79787000 37850000 41937000 9716500 4919400 4797100 5363900 2709300 2654600 0 0 0 16304 2749 17002;17003 84606;84607;84608;84609;84610;84611;84612;84613;84614;84615 85845;85846;85847;85848;85849;85850;85851;85852;85853;85854;85855 85845 1455 11 ISMQELEELRK GSSTTSINVPAAASKISMQELEELRKQLGS AASKISMQELEELRKQLGSVATGSTLQQSL K I S R K Q 0 1 0 0 0 1 3 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 11 1 1374.7177 Q9BSJ2;F2Z2B9 Q9BSJ2 129 139 TUBGCP2 Gamma-tubulin complex component 2 yes no 3 0.00039468 57.836 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.99594 0.9795 17.495 4 Median 0.86702 0.90082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77865 0.88422 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.144 1.2872 NaN 1 0 Median 1.3316 1.0651 NaN 1 0 Median 10158000 5281400 4876700 2877700 1392800 1484900 0 0 0 4239200 2493700 1745500 0 0 0 2252700 1157600 1095100 788500 237290 551220 16305 3815 17004 84616;84617;84618;84619 85856;85857 85857 2 ISMSEVDLNVAAPK GPRLGSPSGKTGTCRISMSEVDLNVAAPKV RISMSEVDLNVAAPKVKGGVDVTLPRVEGK R I S P K V 2 0 1 1 0 0 1 0 0 1 1 1 1 0 1 2 0 0 0 2 0 0 14 0 1472.7545 Q09666 Q09666 569 582 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 6.5451E-08 101.93 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 3 3 1 0.95767 0.9828 26.329 10 Median 0.94701 0.93381 11.438 2 0 Median 1.5331 1.4027 NaN 1 0 Median 1.0189 1.0872 4.6665 3 2 Plateau 0.98586 0.97429 26.619 3 0 Plateau 0.53659 0.6306 NaN 1 0 Median NaN NaN NaN 0 0 Median 162730000 76661000 86070000 59349000 28158000 31191000 2957800 1259200 1698700 86686000 40653000 46033000 11742000 5869900 5872400 1996100 721560 1274500 0 0 0 16306 2749 17005;17006 84620;84621;84622;84623;84624;84625;84626;84627;84628;84629;84630 85858;85859;85860;85861;85862;85863;85864;85865;85866;85867;85868;85869;85870 85859 1456 13 ISMSHEEEPLGTAGPLALAR LEKEMKAQEQRLGIRISMSHEEEPLGTAGP EEEPLGTAGPLALARDLLSETADPFFVLNS R I S A R D 3 1 0 0 0 0 3 2 1 1 3 0 1 0 2 2 1 0 0 0 0 0 20 0 2078.0466 Q9Y5P6 Q9Y5P6 75 94 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 3 3.2747E-06 48.288 By MS/MS By matching 1 1 0.62491 0.58772 16.352 2 Median 0.66366 0.65976 NaN 1 0 Median 0.58842 0.52355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4503400 2542000 1961400 4127200 2292000 1835100 376220 249930 126290 0 0 0 0 0 0 0 0 0 0 0 0 16307 4465 17007 84631;84632 85871 85871 1 ISNAQLQTELVEILK RTQEAIIQIMKMRKKISNAQLQTELVEILK ISNAQLQTELVEILKNMFLPQKKMIKEQIE K I S L K N 1 0 1 0 0 2 2 0 0 2 3 1 0 0 0 1 1 0 0 1 0 0 15 0 1697.9564 Q93034 Q93034 729 743 CUL5 Cullin-5 yes yes 2 0.00034378 55.452 By matching By MS/MS 1 1 1.0967 1.0328 6.7218 2 Median 0.97181 0.98489 NaN 1 0 Median 1.2375 1.0831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5116500 2226800 2889700 988070 472340 515720 4128400 1754400 2373900 0 0 0 0 0 0 0 0 0 0 0 0 16308 3575 17008 84633;84634 85872;85873 85872 2 ISNDNPEEHVLK ESGSPFDPVFEVEPKISNDNPEEHVLKVIP EPKISNDNPEEHVLKVIPEDASESEEKLDQ K I S L K V 0 0 2 1 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1393.6838 Q9H2P0;A0A2R8Y6X0 Q9H2P0 903 914 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 0.0016088 43.308 By MS/MS 5 0.76668 0.831 24.998 5 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76668 0.831 24.998 5 0 Plateau NaN NaN NaN 0 0 Median 21342000 12352000 8990100 0 0 0 0 0 0 0 0 0 0 0 0 21342000 12352000 8990100 0 0 0 16309 3946 17009 84635;84636;84637;84638;84639 85874;85875;85876;85877;85878 85875 5 ISNDPSPGYNIEQMAK IAVGNCLDRFARVLKISNDPSPGYNIEQMA SNDPSPGYNIEQMAKRGKKLVELPYTVKGM K I S A K R 1 0 2 1 0 1 1 1 0 2 0 1 1 0 2 2 0 0 1 0 0 0 16 0 1762.8196 Q9NPF4 Q9NPF4 170 185 OSGEP Probable tRNA N6-adenosine threonylcarbamoyltransferase yes yes 2 0.0001386 60.49 By MS/MS 1 0.68619 0.65577 NaN 1 Median 0.68619 0.65577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5006700 2913200 2093600 5006700 2913200 2093600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16310 4049 17010 84640 85879;85880 85879 2 ISNIPSLIFLDATTGK YKEKHRKLKLWNKYRISNIPSLIFLDATTG SNIPSLIFLDATTGKVVCRNGLLVIRDDPE R I S G K V 1 0 1 1 0 0 0 1 0 3 2 1 0 1 1 2 2 0 0 0 0 0 16 0 1688.9349 Q6DKJ4 Q6DKJ4 129 144 NXN Nucleoredoxin yes yes 2 0.04099 23.236 By matching By MS/MS By matching By matching 1 1 1 1 0.92939 0.83648 10.616 4 Linear 0.8666 0.85983 NaN 1 0 Median 0.94413 0.81377 NaN 1 0 Median 0.86763 0.9029 NaN 1 0 Median 0.79415 0.70632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2823800 1476200 1347600 307480 189900 117570 1669500 798790 870750 792670 457720 334950 54103 29770 24333 0 0 0 0 0 0 16311 3133 17011 84641;84642;84643;84644 85881;85882 85881 2 ISNIVHISNLVRPFTLGQLK DPVRTAQVPSPPRGKISNIVHISNLVRPFT HISNLVRPFTLGQLKELLGRTGTLVEEAFW K I S L K E 0 1 2 0 0 1 0 1 1 3 3 1 0 1 1 2 1 0 0 2 0 0 20 1 2248.3056 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 952 971 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 2.1241E-07 55.453 By matching By matching By MS/MS By matching 1 1 2 1 0.9461 1.0097 7.7533 5 Median NaN NaN NaN 0 0 Median 0.9461 0.95182 NaN 1 0 Median 0.89755 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89459 0.95669 7.6239 2 0 Median 1.1924 1.0899 NaN 1 0 Median 46876000 24706000 22170000 0 0 0 295530 143060 152470 2526600 1426200 1100300 0 0 0 42877000 22602000 20275000 1177500 535400 642050 16312 4560 17012 84645;84646;84647;84648;84649 85883;85884 85883 2 ISNIVIKDDVASEVYK TATTTLTSLAQLLGKISNIVIKDDVASEVY SNIVIKDDVASEVYKAVAAVQKSAEELASG K I S Y K A 1 0 1 2 0 0 1 0 0 3 0 2 0 0 0 2 0 0 1 3 0 0 16 1 1791.9618 Q96S52 Q96S52 452 467 PIGS GPI transamidase component PIG-S yes yes 3 4.65E-05 50.608 By MS/MS By matching 1 1 1.2118 1.1384 14.908 2 Median 1.0915 1.0245 NaN 1 0 Median 1.3453 1.265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12569000 5879700 6689000 11341000 5337500 6003800 1227400 542170 685210 0 0 0 0 0 0 0 0 0 0 0 0 16313 3729 17013 84650;84651 85885;85886 85886 2 ISNLIVLHLR APKASLRLGFSEYCRISNLIVLHLRKVEEE SEYCRISNLIVLHLRKVEEEEDESALKRSE R I S L R K 0 1 1 0 0 0 0 0 1 2 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1176.7343 Q14566 Q14566 723 732 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.00069545 110.41 By MS/MS By matching By MS/MS 1 1 1 1.0145 0.97655 9.3657 3 Median 1.0145 0.97655 NaN 1 0 Median 1.2327 1.0659 NaN 1 0 Median 0.83389 0.88394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40344000 20506000 19838000 18127000 8963200 9163400 6165700 2823500 3342100 16052000 8719200 7332900 0 0 0 0 0 0 0 0 0 16314 2881 17014 84652;84653;84654 85887;85888;85889 85887 3 ISNLLSDYGYHLR IGDATPFNDAVNVQKISNLLSDYGYHLRGN QKISNLLSDYGYHLRGNEVLYNGFTGRKIT K I S L R G 0 1 1 1 0 0 0 1 1 1 3 0 0 0 0 2 0 0 2 0 0 0 13 0 1549.7889 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 1004 1016 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.00028 60.448 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 4 1 0.9573 0.96631 28.292 10 Median 0.94858 0.95501 39.555 2 1 Median 1.4603 1.2487 NaN 1 0 Median 1.0337 1.1367 NaN 1 0 Median 1.493 1.3013 NaN 1 0 Median 0.77956 0.82124 25.984 4 0 Median 0.88659 0.71851 NaN 1 0 Median 33438000 15266000 18173000 8723500 3917600 4805900 2582600 1019300 1563300 8810900 3982800 4828100 314620 129580 185040 12355000 5937400 6417200 652120 279190 372920 16315 671 17015 84655;84656;84657;84658;84659;84660;84661;84662;84663;84664 85890;85891;85892;85893;85894 85893 5 ISNQFDWALMR KEKDIQEESTFSSRKISNQFDWALMRLDLS SSRKISNQFDWALMRLDLSVRRTGRIPKKL K I S M R L 1 1 1 1 0 1 0 0 0 1 1 0 1 1 0 1 0 1 0 0 0 0 11 0 1379.6656 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 79 89 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00016096 90.629 By MS/MS By MS/MS 1 1 1.2867 1.1652 10.125 2 Median 1.1217 1.0847 NaN 1 0 Median 1.4759 1.2516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8359400 3689500 4669900 4365900 2090500 2275400 3993500 1599000 2394600 0 0 0 0 0 0 0 0 0 0 0 0 16316 2315 17016 84665;84666 85895;85896;85897;85898 85898 4 ISNYGWDQSDK PAAVVAPITTGYTVKISNYGWDQSDKFVKI YTVKISNYGWDQSDKFVKIYITLTGVHQVP K I S D K F 0 0 1 2 0 1 0 1 0 1 0 1 0 0 0 2 0 1 1 0 0 0 11 0 1311.5731 Q9HB71 Q9HB71 75 85 CACYBP Calcyclin-binding protein yes yes 2 0.00016921 79.974 By matching By MS/MS By MS/MS 1 1 1 1.1279 1.0984 7.8581 3 Plateau 1.1059 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1627 1.0984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1279 0.94924 NaN 1 0 Median 9692400 4189300 5503100 3008700 1284000 1724700 0 0 0 5078700 2232800 2845800 0 0 0 0 0 0 1605000 672460 932560 16317 4016 17017 84667;84668;84669 85899;85900;85901 85900 3 ISNYGWDQSDKFVK PAAVVAPITTGYTVKISNYGWDQSDKFVKI KISNYGWDQSDKFVKIYITLTGVHQVPTEN K I S V K I 0 0 1 2 0 1 0 1 0 1 0 2 0 1 0 2 0 1 1 1 0 0 14 1 1685.8049 Q9HB71 Q9HB71 75 88 CACYBP Calcyclin-binding protein yes yes 2;3 1.5087E-07 119.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 2 1 1 1.1916 1.1462 38.021 11 Median 1.1162 1.1074 2.8289 4 0 Median 1.2662 1.1462 0.00078052 2 0 Median 1.2256 1.2159 NaN 1 0 Median 1.1672 1.051 1.9993 2 0 Median 3.6474 3.9137 NaN 1 0 Median 1.3212 1.1466 NaN 1 0 Median 357540000 160440000 197100000 251800000 118180000 133620000 25342000 10837000 14505000 50194000 22491000 27703000 9521100 4181900 5339200 17918000 3632400 14285000 2771800 1123800 1648000 16318 4016 17018 84670;84671;84672;84673;84674;84675;84676;84677;84678;84679;84680 85902;85903;85904;85905;85906;85907;85908;85909;85910;85911;85912;85913 85904 12 ISPAALKK CIRTRELQSMADQEKISPAALKKTLLDRVK SMADQEKISPAALKKTLLDRVKLESPTVST K I S K K T 2 0 0 0 0 0 0 0 0 1 1 2 0 0 1 1 0 0 0 0 0 0 8 1 826.52764 Q96C36;A0A087WTV6;A0A087WZR9 Q96C36 277 284 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 2 0.033963 43.814 By MS/MS By matching By matching By matching 1 1 1 1 1.0039 0.98068 12.775 4 Median 0.9058 0.87824 NaN 1 0 Median 1.0089 0.90861 NaN 1 0 Median 0.99896 1.0585 NaN 1 0 Median 1.3113 1.1514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2178500 1015400 1163200 659560 338760 320800 416350 167680 248670 260230 128010 132220 842380 380910 461470 0 0 0 0 0 0 16319 3615 17019 84681;84682;84683;84684 85914 85914 1 ISPDGEEGYPGELK LWTPRVLSNGVQFSRISPDGEEGYPGELKV RISPDGEEGYPGELKVWVTYTLDGGELIVN R I S L K V 0 0 0 1 0 0 3 3 0 1 1 1 0 0 2 1 0 0 1 0 0 0 14 0 1489.6937 Q96C23;H7C320;H7C1B5 Q96C23 132 145 GALM Aldose 1-epimerase yes no 2 0.00039186 71.555 By MS/MS By MS/MS 1 1 0.78846 0.70147 4.0299 2 Median 0.73456 0.68176 NaN 1 0 Median 0.84631 0.72175 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18967000 8834700 10132000 11130000 5982300 5147300 7837400 2852400 4985000 0 0 0 0 0 0 0 0 0 0 0 0 16320 3614 17020 84685;84686 85915;85916 85915 2 ISPFEHQTYCQR SAYDNVNKVRVAIKKISPFEHQTYCQRTLR IKKISPFEHQTYCQRTLREIKILLRFRHEN K I S Q R T 0 1 0 0 1 2 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 12 0 1564.7093 P27361;E9PJF0;E9PQW4;E9PBK7;P28482 P28482 56 67 MAPK3;MAPK1 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase;Mitogen-activated protein kinase 1 no no 3 0.00023858 85.288 By MS/MS 1 0.63589 0.55208 NaN 1 Median NaN NaN NaN 0 0 Median 0.63589 0.55208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4576000 2824900 1751100 0 0 0 4576000 2824900 1751100 0 0 0 0 0 0 0 0 0 0 0 0 16321 2166;2153 17021 84687 85917 85917 1 ISPIQKPQGLDPVEILQER GQPSPVLQLQQKQSRISPIQKPQGLDPVEI QKPQGLDPVEILQEREYRLQARIAHRIQEL R I S E R E 0 1 0 1 0 3 2 1 0 3 2 1 0 0 3 1 0 0 0 1 0 0 19 1 2159.195 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRJ8 P51531 328 346 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 8.1689E-06 49.34 By MS/MS 2 0.43936 0.51298 36.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43936 0.51298 36.752 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31300000 19392000 11908000 0 0 0 0 0 0 31300000 19392000 11908000 0 0 0 0 0 0 0 0 0 16322 2433 17022 84688;84689 85918;85919;85920;85921 85919 4 ISPLQFR VTTVTEIGKDVIGLRISPLQFR________ GKDVIGLRISPLQFR_______________ R I S F R - 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 859.49159 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1218 1224 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0026423 106.76 By MS/MS By MS/MS By matching By matching By matching By matching 4 3 1 1 1 1 1.1069 1.0235 33.959 11 Median 1.0831 1.0517 8.8541 4 0 Median 1.1307 0.95242 15.63 3 0 Median 1.4867 1.6342 NaN 1 0 Median 0.96387 0.82478 NaN 1 0 Median 1.8852 1.9129 NaN 1 0 Median 0.55903 0.53658 NaN 1 0 Median 37945000 17524000 20421000 23904000 11168000 12736000 8991300 4015400 4975900 3631900 1738900 1893100 694430 317370 377050 564650 190590 374060 158890 93933 64952 16323 2473 17023 84690;84691;84692;84693;84694;84695;84696;84697;84698;84699;84700 85922;85923;85924;85925;85926;85927;85928;85929 85922 8 ISPMLSPFISSVVR ______________________________ RISPMLSPFISSVVRNGKVGLDATNCLRIT R I S V R N 0 1 0 0 0 0 0 0 0 2 1 0 1 1 2 4 0 0 0 2 0 0 14 0 1531.8432 Q9NXR7;C9J2G0;F8W733 Q9NXR7 10 23 BRE BRCA1-A complex subunit BRE yes no 2 0.009029 34.887 By MS/MS By MS/MS By matching 1 1 1 0.84372 0.86435 3.4902 3 Median 0.84372 0.84997 NaN 1 0 Median 1.062 0.90893 NaN 1 0 Median 0.81579 0.86435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5202600 2781000 2421600 2071800 1110700 961180 1933300 958110 975150 1197500 712220 485240 0 0 0 0 0 0 0 0 0 16324 4168 17024 84701;84702;84703 85930;85931 85931 2 ISPPIKEEETKGDSVEK ELLAEVVQGQSRTPRISPPIKEEETKGDSV PPIKEEETKGDSVEKNQGTQQRQLLSRLQI R I S E K N 0 0 0 1 0 0 4 1 0 2 0 3 0 0 2 2 1 0 0 1 0 0 17 2 1884.968 Q6PJT7;H0YJA2;G3V256;G3V5I6;A0A087WTC9 Q6PJT7 408 424 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 3 0.017688 20.65 By matching By matching By MS/MS 1 1 1 0.66413 0.86282 12.09 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61752 0.71393 NaN 1 0 Median 0.66413 0.70451 NaN 1 0 Median 0.78407 0.87413 NaN 1 0 Median NaN NaN NaN 0 0 Median 8031000 4617100 3413900 0 0 0 0 0 0 1413600 904020 509560 677400 436750 240650 5940000 3276300 2663700 0 0 0 16325 3175 17025 84704;84705;84706 85932;85933 85932 2 ISPQTVWDYVEK YLTEDLPDSIQVGGRISPQTVWDYVEKIKA GGRISPQTVWDYVEKIKASGTKEICVVRFT R I S E K I 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 1 1 1 1 2 0 0 12 0 1463.7296 Q92576;E7ER40;H0Y8L0 Q92576 1249 1260 PHF3 PHD finger protein 3 yes no 2 0.0053278 41.283 By MS/MS 1 0.67656 0.7538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67656 0.7538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4362700 2605500 1757200 0 0 0 0 0 0 4362700 2605500 1757200 0 0 0 0 0 0 0 0 0 16326 3539 17026 84707 85934 85934 1 ISPTFADAYSNMGNTLK GKLQEALMHYKEAIRISPTFADAYSNMGNT PTFADAYSNMGNTLKEMQDVQGALQCYTRA R I S L K E 2 0 2 1 0 0 0 1 0 1 1 1 1 1 1 2 2 0 1 0 0 0 17 0 1828.8665 O15294 O15294 390 406 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 2.3771E-07 71.241 By MS/MS By MS/MS 2 1 1.437 1.4071 17.983 3 Median 1.4383 1.4078 0.067675 2 2 Median NaN NaN NaN 0 0 Median 0.9385 1.031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15446000 7267800 8178500 8863900 3747900 5115900 0 0 0 6582400 3519800 3062600 0 0 0 0 0 0 0 0 0 16327 1537 17027 84708;84709;84710 85935;85936;85937 85936 3 ISPTGSYNKPALR KENQIDPPVVARYIRISPTGSYNKPALRLE IRISPTGSYNKPALRLELQGCEVNGCSTPL R I S L R L 1 1 1 0 0 0 0 1 0 1 1 1 0 0 2 2 1 0 1 0 0 0 13 1 1402.7569 CON__Q28107 CON__Q28107 2030 2042 yes yes 3 3.5021E-05 95.401 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6817400 6817400 0 0 0 0 0 0 0 3569300 3569300 0 3248100 3248100 0 0 0 0 0 0 0 + 16328 772 17028 84711;84712 85938;85939 85938 2 ISPWLLR WVNVYYEMPDFDVARISPWLLRVELDRKHM MPDFDVARISPWLLRVELDRKHMTDRKLTM R I S L R V 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 7 0 883.52797 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1207 1213 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.015285 71.949 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 2 1.0119 0.9113 6.7185 8 Median 0.95416 0.95586 NaN 1 0 Median 1.1503 0.9631 NaN 1 0 Median 0.77235 0.85272 NaN 1 0 Median 1.0857 0.95053 NaN 1 0 Median 0.78648 0.82198 2.7736 2 0 Median 1.0854 0.9113 0.72789 2 0 Median 20898000 11513000 9385300 2049100 1071700 977430 1138600 631210 507410 4463300 2476200 1987100 314440 141760 172680 12183000 6835900 5347000 750140 356490 393640 16329 486 17029 84713;84714;84715;84716;84717;84718;84719;84720 85940;85941;85942;85943;85944;85945 85944 6 ISPWTGR FVLLTVGALLMLTGKISPWTGRFYSLLDPS ALLMLTGKISPWTGRFYSLLDPSYAKNNIP K I S G R F 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 1 1 0 0 0 0 7 0 815.42899 P46977 P46977 323 329 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.013611 76.035 By MS/MS 1 1.1816 0.95488 NaN 1 Median NaN NaN NaN 0 0 Median 1.1816 0.95488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12259000 5055600 7203000 0 0 0 12259000 5055600 7203000 0 0 0 0 0 0 0 0 0 0 0 0 16330 2352 17030 84721 85946 85946 1 ISQATAQIK DFSSIIQTCSGNIQRISQATAQIKNLMSQL SGNIQRISQATAQIKNLMSQLGTKQDSSKL R I S I K N 2 0 0 0 0 2 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 9 0 958.54475 B1AJQ6;Q86Y82 B1AJQ6 36 44 STX12 Syntaxin-12 yes no 2 0.043534 45.68 By MS/MS 1 1.5547 1.3107 NaN 1 Median NaN NaN NaN 0 0 Median 1.5547 1.3107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1732400 682020 1050400 0 0 0 1732400 682020 1050400 0 0 0 0 0 0 0 0 0 0 0 0 16331 563 17031 84722 85947 85947 1 ISQAVVAQVTGISQSR SVIKEEIKAFLANRRISQAVVAQVTGISQS SQAVVAQVTGISQSRISHWLLQQGSDLSEQ R I S S R I 2 1 0 0 0 3 0 1 0 2 0 0 0 0 0 3 1 0 0 3 0 0 16 0 1642.9002 H0YLF2;E5RGZ2;H0YKJ1;Q6NT76 H0YLF2 186 201 HMBOX1 Homeobox-containing protein 1 yes no 2 0.00011985 67.115 By MS/MS By matching 1 1 1.1453 1.098 15.837 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93427 0.9817 NaN 1 0 Median 1.4041 1.2281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2636000 1252300 1383700 0 0 0 0 0 0 2316700 1112400 1204200 319340 139890 179450 0 0 0 0 0 0 16332 844 17032 84723;84724 85948 85948 1 ISQEHLADHFDSR GSFESRYQQPFEDFRISQEHLADHFDSRER FRISQEHLADHFDSRERRAPRRTRVNGDNR R I S S R E 1 1 0 2 0 1 1 0 2 1 1 0 0 1 0 2 0 0 0 0 0 0 13 0 1553.7223 P19174;V9GY71;V9GYH5 P19174 1262 1274 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 3 9.1427E-06 91.743 By MS/MS By MS/MS 2 1 1.0482 1.0193 15.044 3 Median 0.97415 0.93968 11.505 2 0 Median 1.3941 1.17 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15524000 6890500 8633600 8109900 3812900 4296900 7414200 3077500 4336700 0 0 0 0 0 0 0 0 0 0 0 0 16333 2062 17033 84725;84726;84727 85949;85950;85951;85952 85952 3 ISQIQQLNQMPLYPTEK KEFLLELLVSRHERRISQIQQLNQMPLYPT QIQQLNQMPLYPTEKIIWDENIVPTEYYSG R I S E K I 0 0 1 0 0 4 1 0 0 2 2 1 1 0 2 1 1 0 1 0 0 0 17 0 2030.0507 O60306;H0YH15 O60306 415 431 AQR Intron-binding protein aquarius yes no 2 0.00029332 45.915 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.72775 0.75395 16.857 4 Median 0.58738 0.55595 NaN 1 0 Median 0.85748 0.76279 NaN 1 0 Median 0.68929 0.74522 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76836 0.81181 NaN 1 0 Median NaN NaN NaN 0 0 Median 7910700 4262700 3648100 2354600 1316900 1037700 418470 234340 184140 2674200 1530000 1144200 0 0 0 2463500 1181500 1282000 0 0 0 16334 1611 17034 84728;84729;84730;84731 85953;85954;85955 85955 3 ISQLEMAR TQEQLALEMAELTARISQLEMARQKKESEA MAELTARISQLEMARQKKESEAVEWQQKAQ R I S A R Q 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 946.4906 P26038 P26038 428 435 MSN Moesin yes yes 2 4.8925E-06 166.05 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1.1214 1.0108 13.227 9 Median 1.1081 1.0478 16.421 3 0 Median 1.1411 0.98625 2.2134 2 0 Median 1.0941 1.1016 18.286 3 0 Median 1.2048 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146760000 67510000 79248000 40198000 19083000 21114000 58871000 26653000 32219000 40686000 18541000 22145000 7003800 3233400 3770300 0 0 0 0 0 0 16335 2139 17035;17036 84732;84733;84734;84735;84736;84737;84738;84739;84740;84741 85956;85957;85958;85959;85960;85961;85962;85963;85964;85965;85966;85967;85968 85964 900 13 ISQLQAELR PLRAAAEQLRQKDLRISQLQAELRRPPPAP RQKDLRISQLQAELRRPPPAPAQPPEPEAL R I S L R R 1 1 0 0 0 2 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1056.5928 O94766;G3V150;E9PNA1 O94766 51 59 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes no 2 0.0005758 112.84 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.3046 1.2425 45.711 6 Median 1.0022 0.99736 NaN 1 1 Median 1.7254 1.4963 NaN 1 0 Median 1.6981 1.8419 NaN 1 0 Median 2.4005 2.1074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85682 0.79694 36.518 2 0 Median 23109000 8972600 14136000 9390100 4162200 5228000 4119200 980750 3138500 6267800 2210700 4057100 1869700 845140 1024500 0 0 0 1462200 773870 688310 16336 1101 17037 84742;84743;84744;84745;84746;84747 85969;85970;85971 85971 3 ISQMPVILTPLHFDRDPLQK FEAHNILRESGYAGKISQMPVILTPLHFDR VILTPLHFDRDPLQKQPSCQRSVVIRTFIT K I S Q K Q 0 1 0 2 0 2 0 0 1 2 3 1 1 1 3 1 1 0 0 1 0 0 20 1 2347.2722 P49915 P49915 608 627 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 0.00056232 29.126 By MS/MS By matching By MS/MS 1 2 1 0.64817 0.62286 11.029 4 Median 0.68016 0.69727 NaN 1 0 Median 0.64817 0.62286 7.6947 2 0 Median 0.51248 0.54477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7947000 5092400 2854700 3812100 2428900 1383200 2254900 1349600 905260 1880100 1313800 566250 0 0 0 0 0 0 0 0 0 16337 2405 17038 84748;84749;84750;84751 85972;85973;85974 85973 3 ISQSGDFLR SISIENKVVPENCERISQSGDFLRYHYNGT PENCERISQSGDFLRYHYNGTLLDGTLFDS R I S L R Y 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 9 0 1021.5193 O95302;C9J4P8 O95302 274 282 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0028871 84.743 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16338 1763 17039 84752 85975 85975 1 ISQSNYIPTQQDVLR QLNDSASYYLNDLDRISQSNYIPTQQDVLR ISQSNYIPTQQDVLRTRVKTTGIVETHFTF R I S L R T 0 1 1 1 0 3 0 0 0 2 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1760.9057 P08754 P08754 162 176 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.0001489 77.597 By MS/MS By matching By MS/MS By MS/MS 1 2 3 2 1.044 1.0386 33.24 8 Median 0.93311 0.93369 NaN 1 0 Median 0.95195 0.82202 1.2598 2 0 Median 1.6991 1.8452 39.569 3 2 Median NaN NaN NaN 0 0 Median 1.1554 1.1528 0.4272 2 0 Median NaN NaN NaN 0 0 Median 63627000 29239000 34388000 26570000 13782000 12788000 3696200 1874200 1822000 18473000 7158300 11315000 0 0 0 14887000 6424600 8462700 0 0 0 16339 1908 17040 84753;84754;84755;84756;84757;84758;84759;84760 85976;85977;85978;85979;85980;85981;85982 85976 7 ISQTVEILK TDLYKDRKLLSAEERISQTVEILKHTVDIE LSAEERISQTVEILKHTVDIEEKGVKLKLT R I S L K H 0 0 0 0 0 1 1 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 9 0 1029.607 C9JM82;B4DJ62;G3XAH0;Q99719;E7EPG2;E7EX32;F8W9E5;E7EQM7 C9JM82 35 43 SEPT5 Septin-5 yes no 2 0.024507 52.867 By MS/MS 1 1.0821 1.118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0821 1.118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15164000 7350000 7814300 0 0 0 0 0 0 15164000 7350000 7814300 0 0 0 0 0 0 0 0 0 16340 592 17041 84761 85983 85983 1 ISQTYQQQYGR LIEILASRTPEEIRRISQTYQQQYGRSLED EIRRISQTYQQQYGRSLEDDIRSDTSFMFQ R I S G R S 0 1 0 0 0 4 0 1 0 1 0 0 0 0 0 1 1 0 2 0 0 0 11 0 1370.6579 P09525;Q6P452;B4E1S2 P09525 124 134 ANXA4 Annexin A4;Annexin yes no 2 1.3797E-05 156.75 By MS/MS By MS/MS 1 1 1.3225 1.1662 20.122 2 Median 1.082 1.0115 NaN 1 0 Median 1.6165 1.3445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16837000 7744100 9092700 9987300 5087500 4899800 6849500 2656600 4192900 0 0 0 0 0 0 0 0 0 0 0 0 16341 1917 17042 84762;84763 85984;85985 85985 2 ISQVLGNEIK GVGGEDDDGEVHRSKISQVLGNEIKFTIRE VHRSKISQVLGNEIKFTIREPLGL______ K I S I K F 0 0 1 0 0 1 1 1 0 2 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1099.6237 E9PN66;E9PKN9;E9PS55;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683 E9PN66 44 53 TP53I11 Tumor protein p53-inducible protein 11 yes no 2 0.0090941 76.605 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.087 1.0612 68.649 4 Median NaN NaN NaN 0 0 Median 1.2927 1.1377 4.0488 2 0 Median 0.93561 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.25737 0.27913 NaN 1 0 Median NaN NaN NaN 0 0 Median 21331000 11415000 9915700 0 0 0 12416000 5796200 6619900 2714000 1141400 1572600 0 0 0 6200700 4477500 1723200 0 0 0 16342 940 17043 84764;84765;84766;84767;84768 85986;85987 85987 1 ISRDELLQVLR LHFAFRLYDLDKDEKISRDELLQVLRMMVG KDEKISRDELLQVLRMMVGVNISDEQLGSI K I S L R M 0 2 0 1 0 1 1 0 0 1 3 0 0 0 0 1 0 0 0 1 0 0 11 1 1340.7776 Q99653 Q99653 130 140 CHP1 Calcineurin B homologous protein 1 yes yes 3 0.0014131 48.004 By MS/MS By matching 1 1 1.5433 1.4704 4.7092 2 Median 1.3305 1.4222 NaN 1 0 Median 1.79 1.5202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4905500 1838800 3066700 4703300 1765600 2937700 202190 73146 129040 0 0 0 0 0 0 0 0 0 0 0 0 16343 3760 17044 84769;84770 85988 85988 1 ISRPGDSDDSR IAGHPAFVNYSTSQKISRPGDSDDSRSVNS TSQKISRPGDSDDSRSVNSVLLFTILNPIY K I S S R S 0 2 0 3 0 0 0 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 11 1 1203.548 A0A3B3ITJ4;M0QXS5;M0R1W6;B4DVF8;M0QYL7;P14866 P14866 179 189 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2;3 1.1545E-05 160.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 14 12 17 17 1.0634 1.0041 17.002 69 Median 1.6888 1.6639 3.8755 2 0 Median 1.1056 1.0041 14.317 7 0 Median 0.87972 0.98961 12.681 14 0 Median 1.1478 1.0919 11.954 12 2 Median 0.85475 0.92464 19.571 17 1 Median 1.1697 1.0267 13.39 17 3 Median 831750000 434300000 397450000 8331900 3056300 5275600 45996000 21850000 24146000 222320000 118810000 103510000 50722000 23873000 26849000 474920000 252830000 222100000 29461000 13885000 15576000 16344 2011;436 17045 84771;84772;84773;84774;84775;84776;84777;84778;84779;84780;84781;84782;84783;84784;84785;84786;84787;84788;84789;84790;84791;84792;84793;84794;84795;84796;84797;84798;84799;84800;84801;84802;84803;84804;84805;84806;84807;84808;84809;84810;84811;84812;84813;84814;84815;84816;84817;84818;84819;84820;84821;84822;84823;84824;84825;84826;84827;84828;84829;84830;84831;84832;84833;84834;84835;84836;84837;84838;84839 85989;85990;85991;85992;85993;85994;85995;85996;85997;85998;85999;86000;86001;86002;86003;86004;86005;86006;86007;86008;86009;86010;86011;86012;86013;86014;86015;86016;86017;86018;86019;86020;86021;86022;86023;86024;86025;86026;86027;86028;86029;86030;86031;86032;86033;86034;86035;86036;86037;86038;86039;86040;86041;86042;86043;86044;86045;86046;86047;86048;86049;86050;86051;86052;86053;86054;86055;86056;86057;86058;86059;86060;86061;86062;86063;86064;86065;86066;86067;86068;86069;86070;86071;86072;86073;86074;86075;86076;86077;86078;86079;86080;86081;86082;86083;86084;86085;86086;86087;86088;86089;86090;86091;86092;86093;86094;86095;86096;86097;86098;86099;86100;86101;86102;86103 86019 115 ISRPMDMYDR YNREMERDMDRDVDRISRPMDMYDRSLDNE RDVDRISRPMDMYDRSLDNEWDRDYGRPLD R I S D R S 0 2 0 2 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 10 1 1282.5798 P49750;H0YIQ2 P49750 1293 1302 YLPM1 YLP motif-containing protein 1 yes no 2;3 0.00013066 76.655 By MS/MS By MS/MS By matching 1 3 2 0.78393 0.85133 9.5242 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77363 0.97728 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7727 0.83588 5.404 3 1 Median 1.0231 0.91131 11.571 2 0 Median 34162000 18215000 15948000 0 0 0 0 0 0 6533400 3465600 3067800 0 0 0 25993000 13951000 12042000 1636000 798520 837530 16345 2395 17046 84840;84841;84842;84843;84844;84845 86104;86105;86106;86107;86108 86107 5 ISSADPDKLQTEPLSTSFEISR TSKIETQIMDIKPKRISSADPDKLQTEPLS KLQTEPLSTSFEISRNKIEDGSVVLDSCEV R I S S R N 1 1 0 2 0 1 2 0 0 2 2 1 0 1 2 5 2 0 0 0 0 0 22 1 2420.2071 Q96Q89 Q96Q89 1572 1593 KIF20B Kinesin-like protein KIF20B yes yes 3 7.9179E-14 85.932 By MS/MS By matching 1 1 0.71157 0.76556 0.33955 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64003 0.7674 NaN 1 0 Median 0.7911 0.76372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7630000 4551600 3078400 0 0 0 0 0 0 7425100 4459300 2965700 204960 92279 112680 0 0 0 0 0 0 16346 3717 17047 84846;84847 86109;86110 86109 2 ISSALSVLGK LEATKPEKHPKKEEKISSALSVLGKVVGET KKEEKISSALSVLGKVVGETHVDPIQLQAL K I S G K V 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 3 0 0 0 1 0 0 10 0 973.5808 E7EVZ1;Q86UP3 E7EVZ1 3196 3205 ZFHX4 Zinc finger homeobox protein 4 yes no 2 0.0062678 64.04 By MS/MS 1 1.2312 1.3368 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2312 1.3368 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3088700 1219000 1869700 0 0 0 0 0 0 3088700 1219000 1869700 0 0 0 0 0 0 0 0 0 16347 898 17048 84848 86111 86111 1 ISSDLDGHPVPK EAGFLAEAELLNLRKISSDLDGHPVPKQAF LRKISSDLDGHPVPKQAFTDVATGSLGQGL K I S P K Q 0 0 0 2 0 0 0 1 1 1 1 1 0 0 2 2 0 0 0 1 0 0 12 0 1263.6459 P29401;E9PFF2;F8W888 P29401 103 114 TKT Transketolase yes no 2;3 9.9476E-05 91.584 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 0.82536 0.73644 16.378 9 Median 0.74786 0.6946 14.019 3 0 Plateau 0.87764 0.73065 9.2774 3 1 Median 0.82756 0.86227 18.09 2 0 Median 0.95444 0.81422 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176830000 97419000 79410000 65180000 36755000 28425000 97487000 53004000 44483000 12134000 6639100 5495000 2028200 1021000 1007200 0 0 0 0 0 0 16348 2173 17049 84849;84850;84851;84852;84853;84854;84855;84856;84857 86112;86113;86114;86115;86116;86117;86118;86119;86120;86121;86122;86123;86124;86125 86122 14 ISSILSSLTSVMK PALALPNLANVDLAKISSILSSLTSVMKNT AKISSILSSLTSVMKNTGVSPASRPSPGTP K I S M K N 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 5 1 0 0 1 0 0 13 0 1364.7585 Q5VT52 Q5VT52 456 468 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.024044 46.001 By MS/MS 1 0.89996 0.95174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89996 0.95174 NaN 1 1 Median NaN NaN NaN 0 0 Median 1731200 929780 801460 0 0 0 0 0 0 0 0 0 0 0 0 1731200 929780 801460 0 0 0 16349 3110 17050 84858 86126 86126 1 ISSIQSIVPALEIANAHR KCEFQDAYVLLSEKKISSIQSIVPALEIAN IQSIVPALEIANAHRKPLVIIAEDVDGEAL K I S H R K 3 1 1 0 0 1 1 0 1 4 1 0 0 0 1 3 0 0 0 1 0 0 18 0 1918.0636 P10809 P10809 251 268 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 2.0935E-14 142.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 7 4 4 5 3 1.1658 0.98893 52.276 27 Median 1.6262 1.5062 73.988 4 0 Linear 1.2121 1.0442 15.99 7 0 Median 0.81535 0.82829 33.392 4 0 Median 1.2753 1.0973 43.563 4 0 Median 1.1769 1.2056 82.669 5 0 Median 1.5188 1.3147 49.296 3 0 Plateau 778010000 377110000 400900000 366970000 186490000 180480000 182430000 78511000 103910000 204550000 102610000 101940000 9836600 4248100 5588500 9260700 3150500 6110200 4957200 2100700 2856500 16350 1947 17051 84859;84860;84861;84862;84863;84864;84865;84866;84867;84868;84869;84870;84871;84872;84873;84874;84875;84876;84877;84878;84879;84880;84881;84882;84883;84884;84885 86127;86128;86129;86130;86131;86132;86133;86134;86135;86136;86137;86138;86139;86140;86141;86142;86143;86144;86145;86146;86147;86148;86149;86150 86134 24 ISSIYAR EGSSQGEDSVSGSQRISSIYAREALIEIDY DSVSGSQRISSIYAREALIEIDYGDLCEDL R I S A R E 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 0 7 0 808.4443 Q14683;G8JLG1;V9GY57 Q14683 969 975 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0025089 107.22 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 1.0811 1.003 19.052 8 Median 0.89741 0.79457 NaN 1 0 Median 1.6274 1.3757 NaN 1 0 Median 0.9477 1.0423 NaN 1 0 Median 1.0925 0.96526 NaN 1 0 Median 1.1256 1.1516 NaN 1 0 Median 1.4064 1.1646 18.329 3 1 Plateau 39786000 17898000 21888000 671960 378300 293660 4573900 1963800 2610100 7584000 3386200 4197800 881840 398950 482890 16714000 7766600 8947700 9360300 4004500 5355800 16351 2889 17052 84886;84887;84888;84889;84890;84891;84892;84893 86151;86152;86153;86154;86155;86156;86157;86158 86151 8 ISSLLAELEAIQR FFKMELFEGMRESTKISSLLAELEAIQRNS TKISSLLAELEAIQRNSASQKSVIVSQWTN K I S Q R N 2 1 0 0 0 1 2 0 0 2 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1441.814 Q9UNY4 Q9UNY4 993 1005 TTF2 Transcription termination factor 2 yes yes 2 0.0036405 43.512 By MS/MS 1 1.2553 1.3439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2553 1.3439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 610150 285490 324660 0 0 0 0 0 0 610150 285490 324660 0 0 0 0 0 0 0 0 0 16352 4352 17053 84894 86159 86159 1 ISSLLEEQFQQGK KKIQKKYDERKKNAKISSLLEEQFQQGKLL AKISSLLEEQFQQGKLLACIASRPGQCGRA K I S G K L 0 0 0 0 0 3 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1505.7726 Q5JR95;P62241 Q5JR95 138 150 RPS8 40S ribosomal protein S8 yes no 2;3 6.5963E-79 222.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 5 2 1 7 5 1.2083 1.1217 41.673 28 Median 1.182 1.1189 17.018 8 0 Median 1.2283 1.0562 90.071 5 0 Median 1.2544 1.1916 3.3981 2 1 Median 1.5141 1.2565 NaN 1 0 Median 1.1698 1.1526 32.653 7 0 Median 1.2353 1.0513 20.013 5 0 Median 1329600000 596740000 732890000 780720000 353130000 427590000 85787000 37610000 48177000 79096000 33572000 45524000 12535000 4928700 7606600 362670000 163820000 198850000 8825000 3679400 5145600 16353 2573 17054 84895;84896;84897;84898;84899;84900;84901;84902;84903;84904;84905;84906;84907;84908;84909;84910;84911;84912;84913;84914;84915;84916;84917;84918;84919;84920;84921;84922 86160;86161;86162;86163;86164;86165;86166;86167;86168;86169;86170;86171;86172;86173;86174;86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186;86187;86188;86189 86174 30 ISSLSAATKALAER I S E R 4 1 0 0 0 0 1 0 0 1 2 1 0 0 0 3 1 0 0 0 0 0 14 1 1416.7936 REV__Q5VT06 yes yes 2;3 0.001621 67.207 By MS/MS By MS/MS By matching By MS/MS 6 5 2 3 1.089 1.162 25.471 16 Median 1.1926 1.2279 3.3289 6 0 Median 0.93112 0.85196 26.753 5 0 Median 0.98893 1.1633 1.4972 2 0 Median 1.089 1.0144 12.437 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 265010000 133260000 131750000 77852000 34313000 43540000 177790000 94658000 83133000 5971300 2894200 3077100 3399900 1396600 2003300 0 0 0 0 0 0 + 16354 4546 17055 84923;84924;84925;84926;84927;84928;84929;84930;84931;84932;84933;84934;84935;84936;84937;84938 86190;86191;86192;86193;86194;86195;86196;86197;86198;86199;86200;86201;86202;86203 86196 13 ISSLTASLHAHSR KALPRKSRDPLLSQRISSLTASLHAHSRKK QRISSLTASLHAHSRKKVKRKHPRRAQDSK R I S S R K 2 1 0 0 0 0 0 0 2 1 2 0 0 0 0 4 1 0 0 0 0 0 13 0 1378.7317 V9GYY5;Q9UGY1 V9GYY5 154 166 NOL12 Nucleolar protein 12 yes no 3 0.0003237 57.804 By matching By MS/MS 1 1 1.1655 1.1481 12.956 2 Median 1.298 1.2583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0465 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median 7752200 3786000 3966200 1144700 531730 612960 0 0 0 0 0 0 0 0 0 6607500 3254200 3353300 0 0 0 16355 4268 17056 84939;84940 86204;86205 86205 2 ISSMVVMENVGQQK KADCILYYGFGDIFRISSMVVMENVGQQKL RISSMVVMENVGQQKLYEMVSYCQNISKCR R I S Q K L 0 0 1 0 0 2 1 1 0 1 0 1 2 0 0 2 0 0 0 3 0 0 14 0 1548.764 P46063 P46063 426 439 RECQL ATP-dependent DNA helicase Q1 yes yes 2 4.7693E-07 150.1 By MS/MS By matching By MS/MS By MS/MS 3 1 5 4 0.97289 0.94312 12.33 13 Median 1.0537 1.0165 6.6562 3 0 Median 0.75047 0.65834 NaN 1 0 Median 0.91976 0.91195 2.9107 5 0 Median 1.2143 1.0271 6.1888 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200640000 98548000 102090000 22226000 11103000 11123000 381330 202070 179260 127010000 64419000 62593000 51020000 22824000 28195000 0 0 0 0 0 0 16356 2337 17057;17058;17059 84941;84942;84943;84944;84945;84946;84947;84948;84949;84950;84951;84952;84953 86206;86207;86208;86209;86210;86211;86212;86213;86214;86215;86216;86217;86218;86219;86220;86221;86222;86223 86208 1065;1066 17 ISSPTETER ______________________________ ______________________________ K I S E R C 0 1 0 0 0 0 2 0 0 1 0 0 0 0 1 2 2 0 0 0 0 0 9 0 1018.4931 P31949 P31949 4 12 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 2 0.0016231 79.474 By MS/MS By MS/MS By matching 1 2 1 0.94899 0.87952 4.0056 4 Median 0.86028 0.83849 NaN 1 0 Median 1.0929 0.90483 2.9392 2 0 Median 0.86126 0.87288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8842200 4445200 4397000 4520100 2332000 2188100 3851400 1860100 1991300 470660 253130 217530 0 0 0 0 0 0 0 0 0 16357 2213 17060 84954;84955;84956;84957 86224;86225;86226;86227;86228 86225 5 ISSPTGSKDLQMVNISLR FQYPIIYDIRARPRKISSPTGSKDLQMVNI PTGSKDLQMVNISLRVLSRPNAQELPSMYQ K I S L R V 0 1 1 1 0 1 0 1 0 2 2 1 1 0 1 4 1 0 0 1 0 0 18 1 1945.0303 J3KPX7;Q99623;F5GY37;F5GWA7 J3KPX7 90 107 PHB2 Prohibitin-2 yes no 3 1.8787E-05 49.224 By MS/MS 1 1.1111 1.1134 NaN 1 Median 1.1111 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8774400 4120100 4654300 8774400 4120100 4654300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16358 1313 17061 84958 86229 86229 1 ISSSKGSLGGGFSSGGFSGGSFSR GGGGCGGGGGVSSLRISSSKGSLGGGFSSG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY R I S S R G 0 1 0 0 0 0 0 8 0 1 1 1 0 3 0 9 0 0 0 0 0 0 24 1 2209.04 P13645;CON__P13645 P13645 36 59 KRT10 Keratin, type I cytoskeletal 10 yes no 3 8.5177E-28 96.708 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 0.1009 0.089319 84.722 7 Median NaN NaN NaN 0 0 Median 0.1514 0.13367 123.09 3 3 Median 0.13451 0.15575 NaN 1 1 Median 0.059966 0.054451 69.99 2 2 Median 0.060954 0.068738 NaN 1 1 Median NaN NaN NaN 0 0 Median 39756000 38455000 1301300 7216700 7216700 0 9875700 9417800 457860 5585000 5206900 378090 4476000 4202500 273470 12603000 12411000 191870 0 0 0 + 16359 756 17062 84959;84960;84961;84962;84963;84964;84965;84966;84967 86230;86231;86232;86233;86234;86235;86236;86237;86238 86233 9 ISSSSFIEPIFPTSK HEEYIQRHLNIVRDKISSSSFIEPIFPTSK ISSSSFIEPIFPTSKISSVEGKKIPTESVK K I S S K I 0 0 0 0 0 0 1 0 0 3 0 1 0 2 2 5 1 0 0 0 0 0 15 0 1638.8505 Q6ZXV5 Q6ZXV5 819 833 TMTC3 Transmembrane and TPR repeat-containing protein 3 yes yes 2 0.0076073 32.946 By MS/MS 1 0.38027 0.41491 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38027 0.41491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2414600 1590000 824610 0 0 0 0 0 0 2414600 1590000 824610 0 0 0 0 0 0 0 0 0 16360 3204 17063 84968 86239 86239 1 ISSSSFSR RAFSSRSYTSGPGSRISSSSFSRVGSSNFR TSGPGSRISSSSFSRVGSSNFRGGLGGGYG R I S S R V 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 P05787;CON__P05787;F8VUG2;F8W1U3;F8VQY3 P05787 33 40 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.002215 139.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 3 1 7 5 1.3922 1.3632 19.726 21 Median 1.5075 1.4162 19.254 3 0 Median 1.6162 1.3072 12.318 3 0 Median 1.6067 1.504 16.581 3 0 Median 1.5103 1.0907 NaN 1 0 Median 1.3936 1.4385 8.7214 6 2 Median 1.2333 0.97571 8.3196 5 0 Median 276480000 121020000 155470000 12796000 5490600 7305600 35804000 14838000 20966000 40694000 16191000 24503000 7213600 3084200 4129500 67340000 27952000 39387000 112640000 53460000 59177000 + 16361 750 17064 84969;84970;84971;84972;84973;84974;84975;84976;84977;84978;84979;84980;84981;84982;84983;84984;84985;84986;84987;84988;84989;84990 86240;86241;86242;86243;86244;86245;86246;86247;86248;86249;86250;86251;86252;86253;86254;86255;86256;86257;86258;86259;86260 86247 21 ISSTLYQAAAPVLTPAK TCFIFSMVGLYYINKISSTLYQAAAPVLTP STLYQAAAPVLTPAKVTGKSKKRN______ K I S A K V 4 0 0 0 0 1 0 0 0 1 2 1 0 0 2 2 2 0 1 1 0 0 17 0 1729.9614 Q8N6L1 Q8N6L1 111 127 KRTCAP2 Keratinocyte-associated protein 2 yes yes 2 2.7515E-13 117.23 By MS/MS By MS/MS By matching 2 2 1 0.94092 0.82963 9.2931 5 Median 0.81623 0.77724 9.225 2 0 Median 1.0148 0.86137 6.5045 2 0 Median NaN NaN NaN 0 0 Median 1.1044 0.92119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41491000 21895000 19596000 30959000 16952000 14008000 10280000 4826200 5454200 0 0 0 251300 117070 134230 0 0 0 0 0 0 16362 3386 17065 84991;84992;84993;84994;84995 86261;86262;86263;86264;86265;86266;86267 86264 7 ISSTSHTQDVVYLQQQLQAYAMER IIQQKDLEIQALHARISSTSHTQDVVYLQQ VVYLQQQLQAYAMEREKVFAVLNEKTRENS R I S E R E 2 1 0 1 0 5 1 0 1 1 2 0 1 0 0 3 2 0 2 2 0 0 24 0 2795.3548 H0YJ97;Q15643 H0YJ97 791 814 TRIP11 Thyroid receptor-interacting protein 11 yes no 3 0.0052331 26.5 By MS/MS 1 1.0917 1.0831 NaN 1 Median 1.0917 1.0831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2580000 859480 1720600 2580000 859480 1720600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16363 1186 17066 84996 86268 86268 1 ISSVLAGGSCR GSCGIGGGIGGGSSRISSVLAGGSCRAPST GSSRISSVLAGGSCRAPSTYGGGLSVSSSR R I S C R A 1 1 0 0 1 0 0 2 0 1 1 0 0 0 0 3 0 0 0 1 0 0 11 0 1105.555 CON__P08779;P08779;K7ENV3;P02533;CON__P02533 P02533 31 41 KRT16;KRT14 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2 0.00098242 84.213 By MS/MS By MS/MS By MS/MS 1 1 1 1.1842 1.0246 134.3 3 Plateau NaN NaN NaN 0 0 Median 1.1842 1.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75428 0.75838 NaN 1 1 Median 0.11214 0.087369 NaN 1 1 Median 4917000 3058900 1858100 0 0 0 2020100 809990 1210100 0 0 0 0 0 0 1909100 1305300 603750 987810 943580 44229 + 16364 739;754 17067 84997;84998;84999 86269;86270;86271 86271 3 ISSVSEVMK NVPLPKKSIQSGPLKISSVSEVMKESKQPA QSGPLKISSVSEVMKESKQPASQLQKQKGD K I S M K E 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 3 0 0 0 2 0 0 9 0 978.50558 Q16891;B9A067;C9J406;H7C463;A0A087WYS0;D6RAW4 Q16891 111 119 IMMT MICOS complex subunit MIC60 yes no 2 0.00093589 89.698 By MS/MS By MS/MS By MS/MS 1 1 1 1.419 1.166 22.067 3 Median 0.97697 0.8744 NaN 1 0 Median 1.5438 1.3491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.419 1.166 NaN 1 0 Median 33221000 14329000 18892000 19586000 9061700 10524000 9383100 3312000 6071100 0 0 0 0 0 0 0 0 0 4252000 1955200 2296800 16365 3001 17068 85000;85001;85002 86272;86273;86274;86275;86276;86277 86275 6 ISTEDDGLVR CSFLWAYAAQLAVTKISTEDDGLVRNIDGI LAVTKISTEDDGLVRNIDGIGDQEVIKPEN K I S V R N 0 1 0 2 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1103.5459 E9PCJ7;Q8N806;G3V336 E9PCJ7 128 137 UBR7 Putative E3 ubiquitin-protein ligase UBR7 yes no 2 0.00040727 76.827 By matching By MS/MS 1 1 0.80236 0.73694 9.0843 2 Median 0.7877 0.78583 NaN 1 0 Median 0.81729 0.69109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9216300 5785200 3431100 3135000 1759800 1375200 6081300 4025400 2055900 0 0 0 0 0 0 0 0 0 0 0 0 16366 911 17069 85003;85004 86278 86278 1 ISTEEAIR QYLTGGLVDPEVHGRISTEEAIRKGFIDGR DPEVHGRISTEEAIRKGFIDGRAAQRLQDT R I S I R K 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 8 0 917.48181 P15924 P15924 2745 2752 DSP Desmoplakin yes yes 2 0.010468 58.815 By matching By matching By matching By MS/MS 1 1 1 1 1.0579 1.021 6.1941 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95445 1.0597 NaN 1 0 Median 1.0643 0.93383 NaN 1 0 Median 1.0515 1.0604 NaN 1 0 Median 1.141 0.98362 NaN 1 0 Median 9421100 4365200 5055900 0 0 0 0 0 0 3024800 1448400 1576300 571410 207900 363520 2696200 1327600 1368500 3128800 1381300 1747500 16367 2021 17070 85005;85006;85007;85008 86279 86279 1 ISTEVGITNVDLSTVDK GDNRYIANTVELRVKISTEVGITNVDLSTV TEVGITNVDLSTVDKDQSIAPKTTRVTYPA K I S D K D 0 0 1 2 0 0 1 1 0 2 1 1 0 0 0 2 3 0 0 3 0 0 17 0 1789.9309 P04844 P04844 369 385 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 3.1455E-05 52.555 By matching By MS/MS By matching 1 1 1 1.2301 1.1335 2.8858 3 Plateau NaN NaN NaN 0 0 Median 1.2301 1.0936 NaN 1 0 Median 1.1362 1.1335 NaN 1 0 Median 1.2494 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6698600 3161100 3537500 0 0 0 545520 227180 318330 5848200 2798600 3049600 304850 135340 169510 0 0 0 0 0 0 16368 1854 17071 85009;85010;85011 86280;86281 86281 2 ISTEVGITNVDLSTVDKDQSIAPK GDNRYIANTVELRVKISTEVGITNVDLSTV VDLSTVDKDQSIAPKTTRVTYPAKAKGTFI K I S P K T 1 0 1 3 0 1 1 1 0 3 1 2 0 0 1 3 3 0 0 3 0 0 24 1 2529.3174 P04844 P04844 369 392 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 3 1.8142E-18 82.477 By MS/MS By matching By MS/MS By matching 2 3 1 2 0.99401 0.96412 14.025 8 Median 0.88039 0.88974 11.683 2 0 Median 1.0109 0.95874 0.99117 3 0 Plateau 0.96261 1.0013 NaN 1 0 Median 1.2507 1.2015 15.078 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73972000 38628000 35344000 33402000 18174000 15228000 6367400 3180100 3187200 32294000 16451000 15843000 1908200 822470 1085700 0 0 0 0 0 0 16369 1854 17072 85012;85013;85014;85015;85016;85017;85018;85019 86282;86283;86284 86283 3 ISTITALGHEGK FLKDEIKQEEETCKRISTITALGHEGKQLV CKRISTITALGHEGKQLVNGEVSDERVAPN R I S G K Q 1 0 0 0 0 0 1 2 1 2 1 1 0 0 0 1 2 0 0 0 0 0 12 0 1225.6667 Q96T23;H0YER1;H0YCN2 Q96T23 428 439 RSF1 Remodeling and spacing factor 1 yes no 2;3 5.5363E-06 116.23 By matching By MS/MS By MS/MS 1 2 2 1.2432 1.2118 11.461 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1731 0.98396 NaN 1 0 Median 1.2423 1.3013 0.095812 2 0 Median 1.4099 1.2078 0.47015 2 0 Median 50912000 22494000 28418000 0 0 0 0 0 0 0 0 0 280660 150630 130030 39581000 17899000 21682000 11049000 4444100 6605200 16370 3740 17073 85020;85021;85022;85023;85024 86285;86286;86287 86285 3 ISTITPQIQAFNLQK LEITKLDSSIISEGKISTITPQIQAFNLQK ISTITPQIQAFNLQKAAAGLMSLLREMGKG K I S Q K A 1 0 1 0 0 3 0 0 0 3 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1700.9461 G5EA36;I3L328 G5EA36 442 456 CDC27 no no 2 0.00034351 61.353 By MS/MS By matching 3 2 0.81328 0.77571 7.2262 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81328 0.88709 10.148 3 0 Plateau 0.9016 0.78437 1.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16369000 9360300 7008400 0 0 0 0 0 0 15363000 8788700 6573900 1006100 571640 434480 0 0 0 0 0 0 16371 1135 17074 85025;85026;85027;85028;85029 86288;86289 86288 2 ISTLPQLNSALVQDLAK HMTVKNKYATSKHAKISTLPQLNSALVQDL TLPQLNSALVQDLAKAVAKV__________ K I S A K A 2 0 1 1 0 2 0 0 0 1 4 1 0 0 1 2 1 0 0 1 0 0 17 0 1810.02 P14635 P14635 412 428 CCNB1 G2/mitotic-specific cyclin-B1 yes yes 2 1.9376E-12 123.95 By matching By MS/MS By matching 1 2 1 0.92368 0.86647 35.036 4 Median NaN NaN NaN 0 0 Median 0.81434 0.72211 NaN 1 0 Median 1.058 1.0576 2.4174 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60017 0.51077 NaN 1 0 Median 11204000 5134900 6069300 0 0 0 586990 288660 298330 9884200 4426400 5457800 0 0 0 0 0 0 733100 419880 313220 16372 2007 17075 85030;85031;85032;85033 86290;86291 86291 2 ISTLTIEEGNLDIQR ELDNLTEFNTAHNKRISTLTIEEGNLDIQR ISTLTIEEGNLDIQRPKRKRKNSRVTFSED R I S Q R P 0 1 1 1 0 1 2 1 0 3 2 0 0 0 0 1 2 0 0 0 0 0 15 0 1700.8945 Q12972;A0A0A0MT09 Q12972 177 191 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2 0.0051838 48.004 By MS/MS 2 1.1322 1.2288 15.91 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1322 1.2288 15.91 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3979500 1669700 2309800 0 0 0 0 0 0 3979500 1669700 2309800 0 0 0 0 0 0 0 0 0 16373 2775 17076 85034;85035 86292;86293 86293 2 ISTLTIEEGNLDIQRPK ELDNLTEFNTAHNKRISTLTIEEGNLDIQR TLTIEEGNLDIQRPKRKRKNSRVTFSEDDE R I S P K R 0 1 1 1 0 1 2 1 0 3 2 1 0 0 1 1 2 0 0 0 0 0 17 1 1926.0422 Q12972;A0A0A0MT09 Q12972 177 193 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2;3 8.1112E-10 103.88 By MS/MS By matching 3 2 0.8738 0.91847 11.454 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89105 0.91847 10.908 3 0 Plateau 0.98256 0.86258 15.453 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117600000 61670000 55928000 0 0 0 0 0 0 112970000 59444000 53522000 4631700 2226500 2405200 0 0 0 0 0 0 16374 2775 17077 85036;85037;85038;85039;85040 86294;86295;86296;86297;86298;86299;86300;86301 86300 8 ISTMRPLATAYK IKTLGTPTQPGSTPRISTMRPLATAYKAST TPRISTMRPLATAYKASTSDYQVISDRQTP R I S Y K A 2 1 0 0 0 0 0 0 0 1 1 1 1 0 1 1 2 0 1 0 0 0 12 1 1350.733 Q8NFH5 Q8NFH5 283 294 NUP35 Nucleoporin NUP53 yes yes 2;3 0.00028018 138.76 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.0597 0.96325 16.042 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86883 0.94098 8.3394 2 0 Median 1.0597 0.91822 1.738 2 0 Median 1.1937 1.295 NaN 1 0 Median 1.3613 1.2115 NaN 1 0 Median 74460000 38026000 36434000 0 0 0 0 0 0 41783000 22393000 19391000 21773000 10077000 11696000 5419600 2508700 2910900 5484900 3048200 2436800 16375 3437 17078 85041;85042;85043;85044;85045;85046 86302;86303;86304;86305;86306;86307;86308;86309;86310 86304 9 ISTPQTNTVPIKPLISTPPVSSQPK LTSDASSPRSYVSPRISTPQTNTVPIKPLI IKPLISTPPVSSQPKVSTPVVKQGPVSQSA R I S P K V 0 0 1 0 0 2 0 0 0 3 1 2 0 0 6 4 4 0 0 2 0 0 25 1 2629.4691 Q9BTA9;A0A0A0MRT2 Q9BTA9 455 479 WAC WW domain-containing adapter protein with coiled-coil yes no 3 2.2092E-05 35.32 By MS/MS 1 0.34339 0.38121 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34339 0.38121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15541000 11641000 3899400 0 0 0 0 0 0 15541000 11641000 3899400 0 0 0 0 0 0 0 0 0 16376 3823 17079 85047 86311;86312;86313 86311 3 ISTQLDFASK KLQEQVTDLRSQNTKISTQLDFASKRYEML SQNTKISTQLDFASKRYEMLQDNVEGYRRE K I S S K R 1 0 0 1 0 1 0 0 0 1 1 1 0 1 0 2 1 0 0 0 0 0 10 0 1108.5764 P12270 P12270 714 723 TPR Nucleoprotein TPR yes yes 2 0.00036109 119.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 2 1 0.90019 0.95597 43.277 9 Median 0.70733 0.70919 NaN 1 1 Median 0.55735 0.49304 NaN 1 0 Median 0.88435 0.95873 0.40763 2 0 Median 1.2978 1.2179 15.649 2 1 Median 0.69252 0.80265 92.225 2 0 Median 1.048 0.89795 NaN 1 0 Median 83146000 44710000 38435000 14033000 8294600 5738500 11045000 6524400 4520600 43118000 22578000 20540000 7816300 3335000 4481300 4374900 2722700 1652200 2758500 1255800 1502800 16377 1978 17080 85048;85049;85050;85051;85052;85053;85054;85055;85056 86314;86315;86316;86317;86318;86319;86320;86321;86322 86318 7 ISTSPSVALSKPYMTVSSEFPAAR PAADTYSEFHKHYARISTSPSVALSKPYMT SKPYMTVSSEFPAARLSNGKYPKAPEGGEG R I S A R L 3 1 0 0 0 0 1 0 0 1 1 1 1 1 3 6 2 0 1 2 0 0 24 1 2525.2836 Q6W2J9;H7BYY2 Q6W2J9 364 387 BCOR BCL-6 corepressor yes no 3 2.1848E-12 60.036 By MS/MS 1 0.44245 0.53057 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44245 0.53057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5830800 3916100 1914700 0 0 0 0 0 0 5830800 3916100 1914700 0 0 0 0 0 0 0 0 0 16378 3191 17081 85057 86323 86323 1 ISTVVSSK ADNKCLLRATDGKKKISTVVSSKEVNKFQM ATDGKKKISTVVSSKEVNKFQMAYSNLLRA K I S S K E 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 3 1 0 0 2 0 0 8 0 819.47018 P37108;H0YLA2 P37108 67 74 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.016855 49.097 By MS/MS 1 0.91702 0.92424 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91702 0.92424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1190700 627520 563160 0 0 0 0 0 0 1190700 627520 563160 0 0 0 0 0 0 0 0 0 16379 2266 17082 85058 86324 86324 1 ISTYGLPAGGIQPHPQTK IKRERHGNVASLVQRISTYGLPAGGIQPHP YGLPAGGIQPHPQTKNIKKKTKKRQCKVLF R I S T K N 1 0 0 0 0 2 0 3 1 2 1 1 0 0 3 1 2 0 1 0 0 0 18 0 1863.9843 Q9Y5K6 Q9Y5K6 85 102 CD2AP CD2-associated protein yes yes 3 0.0090312 22.874 By matching By MS/MS By MS/MS 1 1 1 0.66026 0.6624 14.474 3 Median 0.7785 0.7269 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66026 0.6624 NaN 1 0 Median 0.63111 0.54725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26216000 15590000 10626000 5639100 3429100 2210000 0 0 0 17776000 10575000 7200700 2801500 1586100 1215500 0 0 0 0 0 0 16380 4460 17083 85059;85060;85061 86325;86326;86327 86326 3 ISVAGVTSSNVGYLAHAIHQVTK RLIKEFSIYMTKDGRISVAGVTSSNVGYLA SNVGYLAHAIHQVTK_______________ R I S T K - 3 0 1 0 0 1 0 2 2 2 1 1 0 0 0 3 2 0 1 4 0 0 23 0 2351.2597 P00505 P00505 408 430 GOT2 Aspartate aminotransferase, mitochondrial yes yes 3;4 4.8211E-35 127.28 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1 1.3735 1.2939 19.176 8 Median 1.1226 1.034 NaN 1 0 Median 1.5551 1.3476 13.495 2 0 Median 1.2248 1.2939 0.76902 2 0 Median 1.774 1.5018 NaN 1 0 Median 1.8997 1.8867 NaN 1 0 Median 1.311 1.0976 NaN 1 0 Median 105770000 43767000 61999000 29907000 13972000 15936000 60445000 23676000 36769000 11316000 4576600 6739300 2923400 1116000 1807400 505090 182710 322380 668570 243550 425020 16381 1823 17084 85062;85063;85064;85065;85066;85067;85068;85069 86328;86329;86330;86331;86332;86333 86333 6 ISVATGALEAAQGSK DARRACAAGTPAVIRISVATGALEAAQGSK ISVATGALEAAQGSKSQCQTRQTSATSTTM R I S S K S 4 0 0 0 0 1 1 2 0 1 1 1 0 0 0 2 1 0 0 1 0 0 15 0 1401.7464 A6NEM2;P51610 A6NEM2 1149 1163 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 2.9019E-09 156.14 By matching By MS/MS By MS/MS 1 2 2 1.1639 1.1381 23.383 5 Median 0.69868 0.69112 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1255 1.2005 5.1439 2 0 Median 1.2447 1.0835 6.953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51063000 24337000 26726000 3083900 1865600 1218300 0 0 0 41866000 19724000 22142000 6113200 2747000 3366100 0 0 0 0 0 0 16382 509;2438 17085 85070;85071;85072;85073;85074 86334;86335;86336;86337 86337 4 ISVESIPSLR AIQEGSITRGTPTSKISVESIPSLRGSITQ TPTSKISVESIPSLRGSITQGTPALPQTGI K I S L R G 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1099.6237 O75376;A0A088AWL3 O75376 1153 1162 NCOR1 Nuclear receptor corepressor 1 yes no 2 0.00040727 76.827 By MS/MS 1 0.50015 0.54665 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50015 0.54665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3317600 2119100 1198500 0 0 0 0 0 0 3317600 2119100 1198500 0 0 0 0 0 0 0 0 0 16383 1665 17086 85075 86338 86338 1 ISVFIQTDK ILFSNSTRLSFETKRISVFIQTDKALYKPK SFETKRISVFIQTDKALYKPKQEVKFRIVT R I S D K A 0 0 0 1 0 1 0 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 9 0 1049.5757 Q6YHK3 Q6YHK3 129 137 CD109 CD109 antigen yes yes 2 0.014917 68.224 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16384 3193 17087 85076 86339 86339 1 ISVFRPGLR VYQLGDVSQKTTWHRISVFRPGLRDVAYQY KTTWHRISVFRPGLRDVAYQYVKKGSRIYL R I S L R D 0 2 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 9 1 1043.624 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 87 95 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0001764 153.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 3 3 1.1434 1.1399 14.39 12 Median 0.90094 0.92134 9.305 2 0 Median 1.2189 1.0765 10.811 2 0 Median 1.0405 1.13 NaN 1 0 Median 1.3988 1.1499 NaN 1 0 Median 1.1059 1.2428 14.81 3 0 Median 1.3487 1.1681 14.483 3 0 Median 1235900000 583460000 652430000 145030000 75230000 69802000 566760000 265460000 301300000 248690000 119620000 129070000 1264800 509860 754920 113860000 55805000 58052000 160280000 66830000 93448000 16385 2713 17088 85077;85078;85079;85080;85081;85082;85083;85084;85085;85086;85087;85088 86340;86341;86342;86343;86344;86345;86346;86347;86348;86349;86350;86351 86349 12 ISVIVETVYTHVLHPYPTQITQSEK FFTVKLPVALDPGAKISVIVETVYTHVLHP HVLHPYPTQITQSEKQFVVFEGNHYFYSPY K I S E K Q 0 0 0 0 0 2 2 0 2 3 1 1 0 0 2 2 4 0 2 4 0 0 25 0 2881.5226 P04843 P04843 127 151 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 3;4 1.9305E-10 67.992 By MS/MS By MS/MS By matching 1 2 1 0.80518 0.72224 8.5543 4 Median 0.71944 0.69062 NaN 1 0 Median 0.9138 0.77263 3.2089 2 1 Median 0.61133 0.65403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19468000 11832000 7636100 4212600 2375000 1837600 14366000 8905600 5459900 889620 551120 338510 0 0 0 0 0 0 0 0 0 16386 1853 17089 85089;85090;85091;85092 86352;86353;86354;86355;86356 86356 5 ISVLQNNYEK QLTQAAQELAAEKEKISVLQNNYEKSQETF AEKEKISVLQNNYEKSQETFKQLQSDFYGR K I S E K S 0 0 2 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1206.6245 Q15075 Q15075 1014 1023 EEA1 Early endosome antigen 1 yes yes 2 0.00015404 130.75 By MS/MS By MS/MS By matching 1 1 1 1.1042 0.9788 32.286 3 Median 0.98699 0.95493 NaN 1 0 Median 1.1042 0.9788 NaN 1 0 Median 1.486 1.6905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19909000 9776200 10133000 10776000 5604000 5171700 6603800 3386100 3217800 2529100 786130 1743000 0 0 0 0 0 0 0 0 0 16387 2926 17090 85093;85094;85095 86357;86358;86359 86358 3 ISVNNVLPVFDNLMQQK IAAKFDGILGMAYPRISVNNVLPVFDNLMQ VNNVLPVFDNLMQQKLVDQNIFSFYLSRDP R I S Q K L 0 0 3 1 0 2 0 0 0 1 2 1 1 1 1 1 0 0 0 3 0 0 17 0 1958.0295 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;H7C469;F8WD96;C9JH19;F8W787 A0A1B0GW44 199 215 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 2.1024E-05 68.548 By MS/MS By matching By matching By matching 3 2 1 1 1.457 1.349 23.51 7 Median 1.3058 1.2075 24.962 3 0 Median 1.69 1.4241 1.6482 2 0 Median 1.457 1.349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0429 0.85586 NaN 1 0 Median 66437000 26112000 40325000 54413000 21953000 32460000 11347000 3893900 7453000 530710 207280 323440 0 0 0 0 0 0 146660 57864 88793 16388 324 17091;17092 85096;85097;85098;85099;85100;85101;85102 86360;86361;86362;86363;86364;86365 86365 157 6 ISVPIDLQK HLLKSPFSVHPKTGRISVPIDLQKVDQFDP HPKTGRISVPIDLQKVDQFDPFTVPTISFI R I S Q K V 0 0 0 1 0 1 0 0 0 2 1 1 0 0 1 1 0 0 0 1 0 0 9 0 1011.5964 P49642;A0A3B3ITS8;H0YIP2 P49642 330 338 PRIM1 DNA primase small subunit yes no 2 0.0040114 77.282 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.76759 0.71728 23.837 4 Median 0.60958 0.56762 NaN 1 1 Median 1.1612 1.0112 NaN 1 0 Median 0.72366 0.70352 NaN 1 0 Median 0.81419 0.73131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27800000 16631000 11169000 9741400 6261400 3480000 1283800 588680 695090 8637900 5378300 3259500 8136700 4402400 3734400 0 0 0 0 0 0 16389 2388 17093 85103;85104;85105;85106 86366;86367;86368;86369;86370 86367 5 ISVREPMQTGIK TRRRVGLKAPGIIPRISVREPMQTGIKAVD IPRISVREPMQTGIKAVDSLVPIGRGQREL R I S I K A 0 1 0 0 0 1 1 1 0 2 0 1 1 0 1 1 1 0 0 1 0 0 12 1 1357.7388 P25705;K7EK77;K7ENJ4;K7ERX7;K7EJP1 P25705 183 194 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2;3 0.00014925 91.752 By MS/MS By MS/MS By matching 3 2 1 0.94287 0.95796 44.692 6 Median 0.95233 0.94641 17.189 3 0 Plateau 2.0951 1.9355 30.553 2 0 Median 0.87668 0.96965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72636000 37088000 35548000 68029000 35554000 32474000 3925300 1129500 2795800 682070 404310 277760 0 0 0 0 0 0 0 0 0 16390 2135 17094;17095 85107;85108;85109;85110;85111;85112 86371;86372;86373;86374;86375;86376 86373 892 6 ISVSFYHVK PNGSKFAVLHGEAPRISVSFYHVKNNGKIE HGEAPRISVSFYHVKNNGKIELIKMFDKQQ R I S V K N 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 2 0 0 1 2 0 0 9 0 1078.5811 P55884 P55884 587 595 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.0044715 60.59 By MS/MS By MS/MS By MS/MS 2 2 1 1.2587 1.2116 11.945 3 Plateau 1.1183 1.0787 16.424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3204 1.1322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30678000 12860000 17818000 27527000 11404000 16122000 0 0 0 0 0 0 3151100 1455600 1695500 0 0 0 0 0 0 16391 2504 17096 85113;85114;85115;85116;85117 86377;86378;86379;86380;86381;86382 86381 6 ISVTNEHSESTLNVMSGK KYHSQYHTVAGNDIKISVTNEHSESTLNVM TNEHSESTLNVMSGKKSQPSMYEQLRDIAI K I S G K K 0 0 2 0 0 0 2 1 1 1 1 1 1 0 0 4 2 0 0 2 0 0 18 0 1931.9259 P42356 P42356 538 555 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 3 0.060567 8.3594 By MS/MS 1 1.4078 1.2804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4078 1.2804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1322100 530580 791510 0 0 0 0 0 0 0 0 0 1322100 530580 791510 0 0 0 0 0 0 16392 2311 17097 85118 86383 86383 1 ISVTQPDSIVGIVAVDK WSKVKAEPSEKVSLRISVTQPDSIVGIVAV VTQPDSIVGIVAVDKSVNLMNASNDITMEN R I S D K S 1 0 0 2 0 1 0 1 0 3 0 1 0 0 1 2 1 0 0 4 0 0 17 0 1739.9669 Q6YHK3 Q6YHK3 578 594 CD109 CD109 antigen yes yes 2 2.4084E-05 59.57 By MS/MS By matching By matching By MS/MS 1 1 1 2 0.92487 0.96855 20.953 5 Median 0.8153 0.78362 NaN 1 0 Median 1.1351 0.98271 NaN 1 0 Median 1.2375 1.3185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84888 0.88011 13.541 2 0 Median NaN NaN NaN 0 0 Median 11745000 6112300 5632200 3203700 1628500 1575200 616750 318700 298050 932230 511110 421120 0 0 0 6991900 3654000 3337900 0 0 0 16393 3193 17098 85119;85120;85121;85122;85123 86384;86385;86386 86385 3 ISVVSATK EEKKESSLPKSFKRKISVVSATKGVPAGNS PKSFKRKISVVSATKGVPAGNSDTEGGQPG K I S T K G 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 1 0 0 2 0 0 8 0 803.47527 S4R3H4;E7EQT4;Q9UKV3;G3V3T3 S4R3H4 766 773 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.013722 52.482 By MS/MS By matching 1 1 1.2045 1.1307 2.3997 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0887 1.1501 NaN 1 0 Median 1.3327 1.1117 NaN 1 0 Median 3149500 1495300 1654100 0 0 0 0 0 0 0 0 0 0 0 0 2486400 1273600 1212800 663020 221700 441320 16394 4560 17099 85124;85125 86387;86388 86387 2 ISVYSIMGGSTDGLR PRNPAVLSAASFDGRISVYSIMGGSTDGLR ISVYSIMGGSTDGLRQKQVDKLSSSFGNLD R I S L R Q 0 1 0 1 0 0 0 3 0 2 1 0 1 0 0 3 1 0 1 1 0 0 15 0 1554.7712 D6REX3;O94979;D6RHZ5;H7BXG7 D6REX3 328 342 SEC31A Protein transport protein Sec31A yes no 2 0.0003337 53.569 By MS/MS By matching By matching 1 1 1 1.2249 1.1843 3.5943 3 Median 1.2249 1.1843 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1511 1.2451 NaN 1 0 Median 1.3113 1.1612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7020400 3062100 3958300 5648700 2510000 3138600 0 0 0 1203200 454690 748510 168560 97391 71170 0 0 0 0 0 0 16395 823 17100 85126;85127;85128 86389 86389 1 ISVYYNEASSHK PSGNYVGDSDLQLERISVYYNEASSHKYVP LERISVYYNEASSHKYVPRAILVDLEPGTM R I S H K Y 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1396.6623 A0A0B4J269;Q13509;G3V5W4;G3V2R8;G3V3R4;G3V2N6 A0A0B4J269 394 405 TUBB3 Tubulin beta-3 chain yes no 3 7.5708E-05 83.314 By MS/MS By MS/MS By matching 1 1 1 1.2415 1.1816 12.802 3 Median 1.2415 1.1816 NaN 1 0 Median 1.2169 1.0351 NaN 1 0 Median 1.2828 1.3371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9914200 4124800 5789300 3671900 1340500 2331400 5495700 2484900 3010800 746650 299470 447180 0 0 0 0 0 0 0 0 0 16396 216 17101 85129;85130;85131 86390;86391;86392;86393 86393 4 ISVYYNEATGGK PTGTYHGDSDLQLDRISVYYNEATGGKYVP LDRISVYYNEATGGKYVPRAILVDLEPGTM R I S G K Y 1 0 1 0 0 0 1 2 0 1 0 1 0 0 0 1 1 0 2 1 0 0 12 0 1300.6299 Q5JP53;P07437 Q5JP53 29 40 TUBB Tubulin beta chain yes no 2 1.9331E-29 190.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 6 2 6 6 7 1.2021 1.0108 73.012 36 Median 0.9851 0.91437 70.916 9 3 Median 1.1936 0.99467 27.608 6 4 Median 1.0931 1.0717 2.3539 2 0 Median 1.3407 1.169 134.18 6 3 Median 1.6353 1.7198 34.674 6 2 Median 1.2953 1.0461 54.421 7 1 Median 3541000000 1736100000 1804900000 1651800000 903100000 748730000 813910000 367320000 446590000 227890000 105030000 122860000 293280000 133870000 159410000 198850000 76757000 122100000 355220000 150030000 205190000 16397 1887 17102 85132;85133;85134;85135;85136;85137;85138;85139;85140;85141;85142;85143;85144;85145;85146;85147;85148;85149;85150;85151;85152;85153;85154;85155;85156;85157;85158;85159;85160;85161;85162;85163;85164;85165;85166;85167;85168 86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407;86408;86409;86410;86411;86412;86413;86414;86415;86416;86417;86418;86419;86420;86421;86422;86423;86424;86425;86426;86427;86428;86429;86430;86431;86432;86433;86434;86435;86436;86437;86438;86439;86440;86441;86442;86443;86444;86445;86446;86447;86448 86402 55 ISVYYNEATGGKYVPR PTGTYHGDSDLQLDRISVYYNEATGGKYVP SVYYNEATGGKYVPRAILVDLEPGTMDSVR R I S P R A 1 1 1 0 0 0 1 2 0 1 0 1 0 0 1 1 1 0 3 2 0 0 16 1 1815.9155 Q5JP53;P07437 Q5JP53 29 44 TUBB Tubulin beta chain yes no 3 0.00023277 43.024 By MS/MS By matching 1 1 0.87628 0.83638 6.5218 2 Median 0.87806 0.87585 NaN 1 0 Median 0.87451 0.79868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11929000 5352200 6576300 8316100 3885600 4430500 3612400 1466600 2145900 0 0 0 0 0 0 0 0 0 0 0 0 16398 1887 17103 85169;85170 86449 86449 1 ISWEEYK VAKVWKDYDRDKDDKISWEEYKQATYGYYL YDRDKDDKISWEEYKQATYGYYLGNPAEFH K I S Y K Q 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 7 0 953.44945 Q15293 Q15293 135 141 RCN1 Reticulocalbin-1 yes yes 2 0.026075 68.915 By MS/MS 1 0.89921 0.83734 NaN 1 Median 0.89921 0.83734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9072500 4421000 4651500 9072500 4421000 4651500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16399 2940 17104 85171 86450 86450 1 ISWLEGQPQDAVGR LAVQNEVGLVDNPLKISWLEGQPQDAVGRS KISWLEGQPQDAVGRSHSGLSKGSVLSERD K I S G R S 1 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 0 1 0 1 0 0 14 0 1554.7791 Q9NVM6 Q9NVM6 244 257 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 0.0013598 63.408 By MS/MS 1 1.1211 1.1025 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1211 1.1025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7394500 3232000 4162500 0 0 0 0 0 0 7394500 3232000 4162500 0 0 0 0 0 0 0 0 0 16400 4135 17105 85172 86451 86451 1 ISWVGEAVK KKMHQGKKKKQNKNRISWVGEAVKTDGKKS KQNKNRISWVGEAVKTDGKKSYYKKVCIDA R I S V K T 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 9 0 987.53893 P26358 P26358 731 739 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.001584 79.906 By matching By MS/MS By MS/MS 1 2 1 0.99512 0.99006 43.941 4 Median 0.90527 0.85208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4116 1.5298 53.309 2 1 Median 1.0377 0.93408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53538000 24840000 28699000 1333000 669870 663110 0 0 0 45544000 20901000 24643000 6661300 3268900 3392400 0 0 0 0 0 0 16401 2142 17106 85173;85174;85175;85176 86452;86453;86454;86455;86456 86453 5 ISYAQYEK TMSLDPEEEAEHPIKISYAQYEKYLKSDNM EAEHPIKISYAQYEKYLKSDNMIRITAVCK K I S E K Y 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1000.4866 A0A494C0J7;Q08188 A0A494C0J7 574 581 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 2 0.039255 63.565 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16402 459 17107 85177 86457 86457 1 ISYEWAVR QKATKIGRSLEGGFKISYEWAVRFMLRHHL SLEGGFKISYEWAVRFMLRHHLTPHARRAV K I S V R F 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 8 0 1022.5185 Q7Z3K3 Q7Z3K3 1067 1074 POGZ Pogo transposable element with ZNF domain yes yes 2 0.0054254 75.854 By matching By MS/MS By matching 1 2 2 1.1491 1.1264 16.39 5 Median 0.94066 0.88636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0194 1.0699 15.546 2 0 Median 1.4815 1.2227 11.601 2 0 Median 11550000 5035500 6514900 1711700 674490 1037200 0 0 0 0 0 0 0 0 0 9034500 4061500 4973100 804120 299540 504580 16403 3241 17108 85178;85179;85180;85181;85182 86458 86458 1 ISYIPDEEVSSPSPPQR MEKLSGHQFENYSFKISYIPDEEVSSPSPP YIPDEEVSSPSPPQRAQRGDHSSREQGHAP K I S Q R A 0 1 0 1 0 1 2 0 0 2 0 0 0 0 4 4 0 0 1 1 0 0 17 0 1899.9214 F8W930;Q9Y6M1 F8W930 158 174 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 3.7351E-14 110.08 By MS/MS By MS/MS 1 1 0.56306 0.50086 1.1746 2 Median 0.53261 0.50504 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59525 0.49672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14943000 10153000 4790300 13307000 8982100 4324500 0 0 0 0 0 0 1636400 1170700 465740 0 0 0 0 0 0 16404 1088 17109 85183;85184 86459;86460 86459 2 ISYSGQFLVK SVTPADLEKVFAEHKISYSGQFLVKSGYAF FAEHKISYSGQFLVKSGYAFVDCPDEHWAM K I S V K S 0 0 0 0 0 1 0 1 0 1 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1140.6179 Q9NZI8 Q9NZI8 27 36 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0020391 61.679 By matching By MS/MS By matching By MS/MS By matching 1 2 1 6 2 1.2555 1.2421 42.417 12 Median NaN NaN NaN 0 0 Median 1.2093 1.0143 NaN 1 0 Median 0.70942 0.74743 105.66 2 0 Median 1.2312 1.0136 NaN 1 0 Median 1.3917 1.4084 14.097 6 0 Median 1.1579 0.9529 14.268 2 0 Median 66870000 27414000 39457000 0 0 0 342710 132690 210030 31451000 13320000 18131000 436090 194830 241260 28030000 10837000 17193000 6610500 2929200 3681300 16405 4188 17110 85185;85186;85187;85188;85189;85190;85191;85192;85193;85194;85195;85196 86461;86462;86463;86464 86462 4 ISYSLFTALR LYWVGAGTVAYLALRISYSLFTALRVWGVG YLALRISYSLFTALRVWGVGNEAGVGPGLG R I S L R V 1 1 0 0 0 0 0 0 0 1 2 0 0 1 0 2 1 0 1 0 0 0 10 0 1169.6445 Q53GQ0;A0A1B0GV93;E9PI21;A0A1B0GW85;A0A1B0GU83 Q53GQ0 26 35 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.00039861 88.37 By MS/MS By MS/MS 1 1 1.2901 1.1388 3.4911 2 Median 1.2466 1.1672 NaN 1 0 Median 1.3351 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21022000 8906700 12115000 14663000 6187300 8475300 6359300 2719400 3639900 0 0 0 0 0 0 0 0 0 0 0 0 16406 3030 17111 85197;85198 86465;86466;86467 86466 3 ITAAQHSVTGSAVSK ______________________________ ITAAQHSVTGSAVSKTVCKATTHEIMGPKK R I T S K T 3 0 0 0 0 1 0 1 1 1 0 1 0 0 0 3 2 0 0 2 0 0 15 0 1455.7682 Q13492;E9PJT1;E9PK13 Q13492 10 24 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 3 4.0821E-05 67.326 By matching By MS/MS By MS/MS 2 1 2 0.71131 0.69623 97.553 5 Median 0.50518 0.50216 46.21 2 0 Median 2.3816 2.001 NaN 1 1 Median 0.35529 0.39459 131.44 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12640000 5076500 7563100 1357200 997950 359200 8154200 2595000 5559100 3128200 1483500 1644700 0 0 0 0 0 0 0 0 0 16407 2820 17112 85199;85200;85201;85202;85203 86468;86469;86470 86470 3 ITADGAHFELR SPPHCELMAGHLRNRITADGAHFELRLHLI LRNRITADGAHFELRLHLIYLINDVLHHWA R I T L R L 2 1 0 1 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1228.62 J3QK89;Q8IWX8 J3QK89 201 211 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 3 0.00038189 59.198 By matching By matching By MS/MS By MS/MS 1 2 1 3 1.0804 1.1184 16.533 7 Median NaN NaN NaN 0 0 Median 1.0525 0.9 NaN 1 0 Median 1.068 1.1577 4.8905 2 0 Median 1.3104 1.1158 NaN 1 0 Median 1.0804 1.1349 24.062 3 0 Median NaN NaN NaN 0 0 Median 26891000 12031000 14860000 0 0 0 2579700 1009000 1570700 9119200 4395800 4723400 2171800 884770 1287100 13020000 5741600 7278600 0 0 0 16408 1338 17113 85204;85205;85206;85207;85208;85209;85210 86471;86472;86473;86474 86472 4 ITADLLSNGIDVYPQK ADTLTLEERVHFKQRITADLLSNGIDVYPQ TADLLSNGIDVYPQKEFDEDSEDRLVNEKF R I T Q K E 1 0 1 2 0 1 0 1 0 2 2 1 0 0 1 1 1 0 1 1 0 0 16 0 1745.92 Q9UHD8 Q9UHD8 461 476 SEPT9 Septin-9 yes yes 2 1.7327E-10 108.7 By MS/MS By MS/MS 3 3 1.0966 0.97502 10.216 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88611 0.92135 13.035 3 0 Median 1.1729 0.99626 8.1603 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57829000 28280000 29549000 0 0 0 0 0 0 44301000 22410000 21891000 13528000 5870500 7657800 0 0 0 0 0 0 16409 4276 17114 85211;85212;85213;85214;85215;85216 86475;86476;86477;86478;86479;86480;86481;86482 86476 8 ITADLLSNGIDVYPQKEFDEDSEDR ADTLTLEERVHFKQRITADLLSNGIDVYPQ DVYPQKEFDEDSEDRLVNEKFREMIPFAVV R I T D R L 1 1 1 5 0 1 3 1 0 2 2 1 0 1 1 2 1 0 1 1 0 0 25 1 2868.3301 Q9UHD8 Q9UHD8 461 485 SEPT9 Septin-9 yes yes 3 2.9114E-08 43.162 By MS/MS By matching 2 1 0.8435 0.87579 10.374 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81045 0.89051 14.608 2 1 Median NaN NaN NaN 0 0 Median 0.8435 0.87579 NaN 1 0 Median NaN NaN NaN 0 0 Median 15211000 7925300 7285500 0 0 0 0 0 0 11478000 5736200 5741800 0 0 0 3732800 2189100 1543700 0 0 0 16410 4276 17115 85217;85218;85219 86483;86484;86485 86485 3 ITAEEMYDIFGK PEVNRILYIRNLPYKITAEEMYDIFGKYGP PYKITAEEMYDIFGKYGPIRQIRVGNTPET K I T G K Y 1 0 0 1 0 0 2 1 0 2 0 1 1 1 0 0 1 0 1 0 0 0 12 0 1415.6643 Q9Y3B4 Q9Y3B4 30 41 SF3B6 Splicing factor 3B subunit 6 yes yes 2 2.879E-05 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.3157 1.2074 29.176 7 Median 1.2784 1.2074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97381 0.92374 28.657 2 0 Median NaN NaN NaN 0 0 Median 1.5374 1.6884 24.922 2 0 Median 1.4852 1.1996 1.6912 2 0 Median 113130000 52816000 60311000 2137700 898330 1239300 0 0 0 89490000 43421000 46069000 0 0 0 11109000 4617200 6491400 10390000 3879800 6510400 16411 4415 17116;17117 85220;85221;85222;85223;85224;85225;85226 86486;86487;86488;86489;86490;86491;86492;86493;86494;86495 86494 1972 10 ITAFHNAHDLSK PDEDDAYQVLSTLKRITAFHNAHDLSKWDL LKRITAFHNAHDLSKWDLFACNYKLLKTGI R I T S K W 2 0 1 1 0 0 0 0 2 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1352.6837 Q8N3U4 Q8N3U4 694 705 STAG2 Cohesin subunit SA-2 yes yes 3 0.0057517 46.481 By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 0.95486 0.93725 23.085 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89656 0.966 NaN 1 0 Median 1.5104 1.2991 NaN 1 0 Median 0.78408 0.81858 14.872 2 0 Median 1.2379 1.0428 30.392 2 0 Median 18909000 8921100 9987900 0 0 0 0 0 0 6393300 3436300 2957000 3761000 1526100 2234900 6409100 2900300 3508800 2345600 1058400 1287200 16412 3369 17118 85227;85228;85229;85230;85231;85232 86496;86497;86498;86499;86500 86500 4 ITAFIVER AKTEVVDSDGSVKDKITAFIVERDFGGVTN DGSVKDKITAFIVERDFGGVTNGKPEDKLG K I T E R D 1 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 8 0 947.54402 Q9H845;H0Y8Z9 Q9H845 242 249 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.0039199 84.568 By MS/MS By MS/MS By MS/MS 1 1 1 1.2426 1.3041 21.795 3 Median 1.0519 0.99667 NaN 1 0 Median 1.7724 1.5346 NaN 1 0 Median 1.2426 1.3041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22337000 10208000 12128000 14767000 7247300 7519900 4963900 1661200 3302700 2605700 1300000 1305700 0 0 0 0 0 0 0 0 0 16413 3988 17119 85233;85234;85235 86501;86502;86503;86504;86505 86502 5 ITAFVVER KTPVTDPATGAVKEKITAFVVERGFGGITH TGAVKEKITAFVVERGFGGITHGPPEKKMG K I T E R G 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 8 0 933.52837 P49748 P49748 279 286 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.0034335 96.492 By MS/MS By MS/MS 1 1 1.057 0.95714 19.789 2 Median 0.87813 0.83216 NaN 1 0 Median 1.2723 1.1009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23864000 11407000 12456000 14465000 7338800 7126100 9398700 4068600 5330100 0 0 0 0 0 0 0 0 0 0 0 0 16414 2394 17120 85236;85237 86506;86507;86508;86509 86507 4 ITAHLVHELR GAIALGHPLGGSGSRITAHLVHELRRRGGK GSGSRITAHLVHELRRRGGKYAVGSACIGG R I T L R R 1 1 0 0 0 0 1 0 2 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1187.6775 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 358 367 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 3 0.002174 66.595 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16415 220 17121 85238;85239 86510;86511 86510 2 ITAHLVHELRR GAIALGHPLGGSGSRITAHLVHELRRRGGK SGSRITAHLVHELRRRGGKYAVGSACIGGG R I T R R R 1 2 0 0 0 0 1 0 2 1 2 0 0 0 0 0 1 0 0 1 0 0 11 1 1343.7786 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 358 368 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 3 0.005579 37.717 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.0351 0.93852 38.914 4 Median 0.59715 0.6283 NaN 1 0 Median 1.2913 1.2059 NaN 1 1 Median 1.3789 1.4133 NaN 1 0 Median 0.82976 0.73042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5935400 2858400 3077000 1761200 971730 789420 992840 482360 510480 1849600 746980 1102600 1331800 657340 674430 0 0 0 0 0 0 16416 220 17122 85240;85241;85242;85243 86512;86513;86514 86512 3 ITALDEFATK KHEDFEKSLSAQEEKITALDEFATKLIQNN AQEEKITALDEFATKLIQNNHYAMEDVATR K I T T K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1107.5812 A0A0D9SF54;Q13813 Q13813 523 532 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00036109 82.749 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 1 0.90187 0.88043 26.274 8 Median 1.2284 1.1854 NaN 1 1 Median 0.97912 0.85279 48.635 2 0 Median 0.68614 0.75141 NaN 1 0 Median 0.87505 0.86284 NaN 1 1 Median 0.74609 0.77654 32.038 2 0 Median 1.0488 0.89838 NaN 1 0 Median 177850000 92500000 85355000 14822000 6022000 8800000 7914000 3767600 4146400 113220000 61267000 51950000 6998500 3546300 3452200 29338000 15409000 13929000 5565200 2487500 3077700 16417 264;2838 17123 85244;85245;85246;85247;85248;85249;85250;85251 86515;86516;86517;86518;86519;86520;86521;86522;86523 86517 9 ITAMDTEDQGVK WAQMQIDKASEKSIRITAMDTEDQGVKVFL SIRITAMDTEDQGVKVFLISASSKDTGQLY R I T V K V 1 0 0 2 0 1 1 1 0 1 0 1 1 0 0 0 2 0 0 1 0 0 12 0 1306.6075 B7Z7F3;Q9H6Z4;K7EIJ4 B7Z7F3 402 413 RANBP3 Ran-binding protein 3 yes no 2 5.3218E-06 99.653 By MS/MS By MS/MS 1 1 0.91549 0.82131 10.962 2 Median 0.93117 0.88751 NaN 1 0 Median 0.90007 0.76005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12733000 6972700 5760600 6354500 3434700 2919800 6378800 3538100 2840800 0 0 0 0 0 0 0 0 0 0 0 0 16418 636 17124 85252;85253 86524;86525;86526;86527 86525 4 ITAPTHVPLQYIGPNQPR VLVPPALQSYLGTDRITAPTHVPLQYIGPN PTHVPLQYIGPNQPRKPGLPGQPAVS____ R I T P R K 1 1 1 0 0 2 0 1 1 2 1 0 0 0 4 0 2 0 1 1 0 0 18 0 2001.0796 M0QWZ7;M0R2C6;Q9NP81;M0R259;M0QX29 M0QWZ7 490 507 SARS2 Serine--tRNA ligase, mitochondrial yes no 3 1.1574E-06 77.562 By MS/MS By matching By matching 1 1 1 0.70691 0.61118 19.906 3 Median 0.5186 0.50182 NaN 1 0 Median 0.84697 0.74723 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70691 0.61118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8962100 5292500 3669600 7505500 4408400 3097100 501720 251560 250150 0 0 0 954870 632530 322340 0 0 0 0 0 0 16419 1407 17125 85254;85255;85256 86528;86529 86528 2 ITAQQITTPGAQQK IQPQAAQGPAAVQQKITAQQITTPGAQQKV KITAQQITTPGAQQKVAYAAQPALKTQFLT K I T Q K V 2 0 0 0 0 4 0 1 0 2 0 1 0 0 1 0 3 0 0 0 0 0 14 0 1483.7995 Q96L91;A0A0A0MR70 Q96L91 2995 3008 EP400 E1A-binding protein p400 yes no 2 0.00035844 72.434 By MS/MS By matching 1 1 0.80111 0.80176 25.081 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62476 0.67146 NaN 1 0 Median 1.0272 0.95734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6443400 3920800 2522700 0 0 0 0 0 0 5745600 3554700 2190900 697870 366100 331780 0 0 0 0 0 0 16420 3700 17126 85257;85258 86530 86530 1 ITATMDDMLSTR TDQEGPPPDGPPEKRITATMDDMLSTRSST EKRITATMDDMLSTRSSTLTEDGAKSSEAI R I T T R S 1 1 0 2 0 0 0 0 0 1 1 0 2 0 0 1 3 0 0 0 0 0 12 0 1353.6268 O14497;H0Y488;A0A1B0GTU5 O14497 1907 1918 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 5.1055E-06 118.4 By MS/MS By MS/MS 4 2 1.1562 1.2188 22.152 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0706 1.1723 22.5 4 0 Median 1.5493 1.3406 17.197 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43147000 20745000 22402000 0 0 0 0 0 0 40011000 19440000 20571000 3135300 1305100 1830200 0 0 0 0 0 0 16421 1480 17127 85259;85260;85261;85262;85263;85264 86531;86532;86533;86534 86531 3 ITDAYLDQYLWYEADKR YSHLVPVYDVEPLEKITDAYLDQYLWYEAD DAYLDQYLWYEADKRRLFPPWIKPADTEPP K I T K R R 2 1 0 3 0 1 1 0 0 1 2 1 0 0 0 0 1 1 3 0 0 0 17 1 2162.032 Q6P2Q9;I3L0J9 Q6P2Q9 917 933 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.063603 16.88 By MS/MS 1 0.9858 0.94516 NaN 1 Median NaN NaN NaN 0 0 Median 0.9858 0.94516 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1123800 502960 620820 0 0 0 1123800 502960 620820 0 0 0 0 0 0 0 0 0 0 0 0 16422 3157 17128 85265 86535 86535 1 ITDAYLDQYLWYEADKRR YSHLVPVYDVEPLEKITDAYLDQYLWYEAD AYLDQYLWYEADKRRLFPPWIKPADTEPPP K I T R R L 2 2 0 3 0 1 1 0 0 1 2 1 0 0 0 0 1 1 3 0 0 0 18 2 2318.1331 Q6P2Q9;I3L0J9 Q6P2Q9 917 934 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 4 0.062739 9.1834 By MS/MS By matching 2 1 1.1002 1.3221 17.567 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95452 1.111 24.605 2 0 Median NaN NaN NaN 0 0 Median 0.99052 1.1587 NaN 1 0 Median NaN NaN NaN 0 0 Median 9897000 4625300 5271700 0 0 0 0 0 0 8890100 4176500 4713600 0 0 0 1006900 448780 558070 0 0 0 16423 3157 17129 85266;85267;85268 86536;86537 86536 2 ITDFGEFMR PSISEGCGGRVTDYRITDFGEFMRENRLTP RVTDYRITDFGEFMRENRLTPFLDPRYKID R I T M R E 0 1 0 1 0 0 1 1 0 1 0 0 1 2 0 0 1 0 0 0 0 0 9 0 1114.5117 Q9NVM9 Q9NVM9 415 423 ASUN Protein asunder homolog yes yes 2 0.0035603 64.265 By matching By MS/MS 1 1 0.99998 1.0085 8.8435 2 Median 0.95296 0.94733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0493 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8572400 4015800 4556600 1071100 492950 578170 0 0 0 7501300 3522900 3978400 0 0 0 0 0 0 0 0 0 16424 4136 17130 85269;85270 86538;86539 86539 2 ITDGLHALQEASNK EDSKTLAAKEKEVKKITDGLHALQEASNKD KITDGLHALQEASNKDAEALAAAQQHFNAV K I T N K D 2 0 1 1 0 1 1 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 14 0 1495.7631 O95347 O95347 355 368 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 1.4388E-05 142.97 By MS/MS By MS/MS 1 1 0.96171 0.82893 36.921 2 Median NaN NaN NaN 0 0 Median 0.7477 0.63847 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.237 1.0762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12498000 5697800 6800600 0 0 0 5122700 2305900 2816800 0 0 0 7375700 3392000 3983700 0 0 0 0 0 0 16425 1766 17131 85271;85272 86540;86541;86542 86541 3 ITDGTMLQAIER KEDVYRGPAIRALCRITDGTMLQAIERYMK LCRITDGTMLQAIERYMKQAIVDKVSSVSS R I T E R Y 1 1 0 1 0 1 1 1 0 2 1 0 1 0 0 0 2 0 0 0 0 0 12 0 1346.6864 Q9UBF2 Q9UBF2 131 142 COPG2 Coatomer subunit gamma-2 yes yes 2 0.00013379 103.22 By MS/MS By MS/MS 1 1 0.97315 0.87999 20.029 2 Median 0.80722 0.76378 NaN 1 1 Median 1.1732 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19298000 8426500 10872000 10812000 5276900 5534900 8486300 3149600 5336700 0 0 0 0 0 0 0 0 0 0 0 0 16426 4238 17132 85273;85274 86543;86544 86543 2 ITDIIGKEEGIGPENLR VHCEHVEDEGESRYKITDIIGKEEGIGPEN DIIGKEEGIGPENLRGSGMIAGESSLAYNE K I T L R G 0 1 1 1 0 0 3 3 0 4 1 1 0 0 1 0 1 0 0 0 0 0 17 1 1852.9894 Q13085;Q59FY4 Q13085 1782 1798 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 7.589E-06 74.12 By MS/MS By MS/MS 2 2 0.8139 0.81385 23.531 4 Median 0.65987 0.67577 4.2754 2 0 Median 1.0519 1.0056 7.9092 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20005000 10745000 9260000 14737000 8166200 6570500 5268500 2579000 2689500 0 0 0 0 0 0 0 0 0 0 0 0 16427 2784 17133 85275;85276;85277;85278 86545;86546;86547 86545 3 ITDLANLSAANHDAAIFPGGFGAAK SRNVLTESARIARGKITDLANLSAANHDAA NHDAAIFPGGFGAAKNLSTFAVDGKDCKVN K I T A K N 7 0 2 2 0 0 0 3 1 2 2 1 0 2 1 1 1 0 0 0 0 0 25 0 2441.2339 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3;A0A096LP73;A0A2R8YDR7;F2Z2Q0;A0A096LP12;A0A096LNJ1;A0A2R8Y6K9 A0A096LPI6 128 152 C21orf33 yes no 2;3 3.6661E-13 61.097 By MS/MS 2 0.77575 0.72057 4.8512 2 Median 0.77575 0.72057 4.8512 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89387000 48786000 40601000 89387000 48786000 40601000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16428 144 17134 85279;85280 86548;86549;86550;86551 86548 4 ITDLLPNITR GSPESTKLQTLPVSRITDLLPNITRNGAFI LPVSRITDLLPNITRNGAFINWKEAKLTWS R I T T R N 0 1 1 1 0 0 0 0 0 2 2 0 0 0 1 0 2 0 0 0 0 0 10 0 1154.6659 B5MDE0;Q96AA3 B5MDE0 182 191 RFT1 Protein RFT1 homolog yes no 2 0.0017451 80.755 By MS/MS 1 0.83463 0.82494 NaN 1 Median 0.83463 0.82494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7825300 5214900 2610400 7825300 5214900 2610400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16429 622 17135 85281 86552 86552 1 ITDLYTDLR FTKWVNSHLARVSCRITDLYTDLRDGRMLI ARVSCRITDLYTDLRDGRMLIKLLEVLSGE R I T L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1108.5764 Q01082;A0A087WUZ3;F8W6C1 Q01082 75 83 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0010057 92.439 By MS/MS By MS/MS By MS/MS 1 1 1 0.85567 0.75388 16.23 3 Median NaN NaN NaN 0 0 Median 1.0672 0.90989 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85567 0.75388 NaN 1 1 Median 0.63915 0.65864 NaN 1 1 Median NaN NaN NaN 0 0 Median 19264000 11442000 7822600 0 0 0 3934200 1978300 1955900 0 0 0 6364600 3591900 2772700 8965400 5871400 3094000 0 0 0 16430 2681 17136 85282;85283;85284 86553;86554;86555 86554 3 ITDLYTDLRDGR FTKWVNSHLARVSCRITDLYTDLRDGRMLI SCRITDLYTDLRDGRMLIKLLEVLSGERLP R I T G R M 0 2 0 3 0 0 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 12 1 1436.726 Q01082;A0A087WUZ3;F8W6C1 Q01082 75 86 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.6185E-14 190.88 By MS/MS By MS/MS By MS/MS 2 1 2 0.95805 1.2102 78.256 5 Median 1.6976 1.8154 46.462 2 0 Median 0.31444 0.29471 NaN 1 1 Median 0.88894 1.1229 10.589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98287000 50739000 47548000 19010000 6882800 12127000 16186000 11748000 4437700 63091000 32108000 30983000 0 0 0 0 0 0 0 0 0 16431 2681 17137 85285;85286;85287;85288;85289 86556;86557;86558;86559;86560;86561;86562;86563 86561 8 ITDSAGHILYSK SDQSGGAGGLRSHLKITDSAGHILYSKEDA HLKITDSAGHILYSKEDATKGKFAFTTEDY K I T S K E 1 0 0 1 0 0 0 1 1 2 1 1 0 0 0 2 1 0 1 0 0 0 12 0 1303.6772 P49755;G3V2K7 P49755 76 87 TMED10 Transmembrane emp24 domain-containing protein 10 yes no 2;3 5.1055E-06 117.67 By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 1.3254 1.135 15.515 11 Median 1.1346 1.0679 11.456 3 1 Median 1.3952 1.2017 14.406 4 1 Linear 1.1618 1.0922 24.448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7007 1.3634 2.7537 2 0 Median 109790000 48613000 61182000 56136000 25793000 30343000 37838000 15864000 21974000 15304000 6783400 8521000 0 0 0 0 0 0 516370 172650 343710 16432 2396 17138 85290;85291;85292;85293;85294;85295;85296;85297;85298;85299;85300;85301 86564;86565;86566;86567;86568;86569;86570;86571;86572 86571 9 ITDSAGHILYSKEDATK SDQSGGAGGLRSHLKITDSAGHILYSKEDA DSAGHILYSKEDATKGKFAFTTEDYDMFEV K I T T K G 2 0 0 2 0 0 1 1 1 2 1 2 0 0 0 2 2 0 1 0 0 0 17 1 1847.9265 P49755;G3V2K7 P49755 76 92 TMED10 Transmembrane emp24 domain-containing protein 10 yes no 2;3;4 9.505E-08 92.211 By MS/MS By MS/MS By matching By matching 4 2 2 2 1.1141 1.1007 21.086 10 Median 1.0767 1.0739 27.02 4 0 Median 1.2976 1.1475 0.95717 2 0 Median 1.0786 1.0905 20.018 2 0 Median 1.3091 1.1776 23.9 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96343000 46093000 50250000 77335000 37421000 39914000 12879000 5824400 7055000 3921700 1819900 2101800 2207500 1027900 1179600 0 0 0 0 0 0 16433 2396 17139 85302;85303;85304;85305;85306;85307;85308;85309;85310;85311 86573;86574;86575;86576;86577;86578;86579;86580;86581 86581 9 ITEAVATATEQR SNSDLSGRCAELQVRITEAVATATEQRELI QVRITEAVATATEQRELIARLEQDLSIIQS R I T Q R E 3 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 3 0 0 1 0 0 12 0 1288.6623 Q13948 Q13948 428 439 CUX1 Protein CASP yes yes 2 0.0033898 70.028 By MS/MS By MS/MS 2 2 1.4206 1.5327 10.068 3 Plateau 1.3136 1.3076 NaN 1 1 Median 1.568 1.3962 13.193 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3168300 1366700 1801700 887900 357300 530600 2280400 1009400 1271100 0 0 0 0 0 0 0 0 0 0 0 0 16434 2847 17140 85312;85313;85314;85315 86582;86583;86584;86585 86584 4 ITEDYYVHLIADNLPVATR PVTLTVEQSRLVAERITEDYYVHLIADNLP YYVHLIADNLPVATRLELYSNRDSDDKKKE R I T T R L 2 1 1 2 0 0 1 0 1 2 2 0 0 0 1 0 2 0 2 2 0 0 19 0 2202.1321 A0A0C4DFM1;Q92544 A0A0C4DFM1 108 126 TM9SF4 Transmembrane 9 superfamily member 4 yes no 3 1.9606E-05 46.159 By MS/MS By MS/MS 2 2 1.1977 0.99245 11.722 4 Linear 0.77898 0.78514 1.6766 2 0 Median 1.1296 0.96113 0.61761 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9678600 4995700 4683000 3565300 1972600 1592700 6113300 3023000 3090300 0 0 0 0 0 0 0 0 0 0 0 0 16435 229 17141 85316;85317;85318;85319 86586;86587;86588;86589 86589 4 ITEELNLR CERPLTQEELLREAKITEELNLRSLETYER ELLREAKITEELNLRSLETYERLEADKKKQ K I T L R S 0 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 986.53966 Q15906;A0A1W2PPT2 Q15906 178 185 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes no 2 7.0186E-06 164.53 By MS/MS By MS/MS 2 3 1.2037 1.0358 12.932 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95988 0.98803 5.9975 2 0 Median 1.2981 1.0883 13.549 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40860000 18942000 21918000 0 0 0 0 0 0 20302000 10078000 10224000 20558000 8864300 11694000 0 0 0 0 0 0 16436 2975 17142 85320;85321;85322;85323;85324 86590;86591 86590 2 ITEFCHR MTKYKPESEELTAERITEFCHRFLEGKIKP SEELTAERITEFCHRFLEGKIKPHLMSQEL R I T H R F 0 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 7 0 961.44399 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 339 345 P4HB Protein disulfide-isomerase yes no 2 0.020057 60.788 By MS/MS 1 1.6864 1.4398 NaN 1 Median NaN NaN NaN 0 0 Median 1.6864 1.4398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3334800 1178700 2156100 0 0 0 3334800 1178700 2156100 0 0 0 0 0 0 0 0 0 0 0 0 16437 1883 17143 85325 86592;86593 86592 2 ITEIYEGTSEIQR YVTEMPAERHYRDARITEIYEGTSEIQRLV ARITEIYEGTSEIQRLVIAGHLLRSYRS__ R I T Q R L 0 1 0 0 0 1 3 1 0 3 0 0 0 0 0 1 2 0 1 0 0 0 13 0 1537.7624 P16219;E9PE82 P16219 387 399 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 3.8547E-07 137.98 By MS/MS By matching 1 1 0.85989 0.87713 21.024 2 Median 0.76048 0.75596 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97229 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9523100 6057500 3465500 4155500 2317700 1837800 0 0 0 5367500 3739800 1627700 0 0 0 0 0 0 0 0 0 16438 2026 17144 85326;85327 86594;86595 86594 2 ITELFAVALPQLLAK LTAKEKKTQLDDRTKITELFAVALPQLLAK ITELFAVALPQLLAKYSVDAEKVTNLLQLP K I T A K Y 3 0 0 0 0 1 1 0 0 1 4 1 0 1 1 0 1 0 0 1 0 0 15 0 1625.9756 Q8N3U4 Q8N3U4 563 577 STAG2 Cohesin subunit SA-2 yes yes 2 0.0059883 34.532 By matching By MS/MS By matching 1 1 1 1.0774 0.99709 7.3685 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0774 0.93749 NaN 1 0 Median 0.96783 0.99709 NaN 1 0 Median 1.2368 1.0857 NaN 1 0 Median 2191100 1057400 1133700 0 0 0 0 0 0 0 0 0 166480 75213 91265 1952000 940290 1011700 72606 41870 30736 16439 3369 17145 85328;85329;85330 86596 86596 1 ITELKEEIEVK EDQQKINKFARNTSRITELKEEIEVKKKQL NTSRITELKEEIEVKKKQLQNLEDACDDIM R I T V K K 0 0 0 0 0 0 4 0 0 2 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1329.7391 E9PQY2;Q9NQP4 E9PQY2 33 43 PFDN4 Prefoldin subunit 4 yes no 3 0.059027 46.88 By MS/MS 1 1.1752 1.0188 NaN 1 Median NaN NaN NaN 0 0 Median 1.1752 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5661300 2363000 3298300 0 0 0 5661300 2363000 3298300 0 0 0 0 0 0 0 0 0 0 0 0 16440 982 17146 85331 86597 86597 0 ITELMQVLK LAGREMTRLAGFTARITELMQVLKDLNHGK AGFTARITELMQVLKDLNHGKYERTMVSQQ R I T L K D 0 0 0 0 0 1 1 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 9 0 1073.6155 P28288 P28288 391 399 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.00062125 109.01 By MS/MS By matching By matching By matching 3 2 2 1 1.2471 1.1529 10.665 8 Median 1.0594 1.0557 10.123 3 0 Median 1.3756 1.1959 7.9565 2 0 Median 1.1924 1.2393 10.687 2 0 Median 1.348 1.1984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22287000 10210000 12077000 12383000 6199000 6183900 4369000 1749800 2619300 5475200 2232100 3243100 59504 28776 30728 0 0 0 0 0 0 16441 2163 17147 85332;85333;85334;85335;85336;85337;85338;85339 86598 86598 1 ITELQLK GETREREEQETTSSKITELQLKLESALTEL EQETTSSKITELQLKLESALTELEQLRKSR K I T L K L 0 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 0 843.50657 P12270 P12270 576 582 TPR Nucleoprotein TPR yes yes 2 0.005273 97.602 By MS/MS By MS/MS By matching 2 2 2 1.0685 1.0583 20.411 6 Median NaN NaN NaN 0 0 Median 1.3 1.1459 2.7565 2 0 Median 0.79872 0.86973 19.255 2 0 Median 1.0037 0.9323 29.693 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29378000 13703000 15675000 0 0 0 9878900 3553500 6325400 16884000 8833700 8050400 2615000 1315700 1299300 0 0 0 0 0 0 16442 1978 17148 85340;85341;85342;85343;85344;85345 86599;86600;86601 86599 3 ITELTDENVK ______________________________ QPTVRITELTDENVKFIIENTDLAVANSIR R I T V K F 0 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 10 0 1160.5925 P19387;H3BRR2 P19387 11 20 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes no 2 0.00035174 96.331 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 3 1.0163 0.88003 20.724 9 Median 1.0833 1.0653 NaN 1 1 Median 1.2292 1.0462 25.046 2 0 Median 0.8786 0.84013 NaN 1 1 Median 1.0925 0.91801 NaN 1 0 Median 0.88417 0.88003 NaN 1 0 Median 0.88276 0.72226 31.706 3 0 Median 23476000 11164000 12312000 2114500 941830 1172600 5968600 2298800 3669800 3153900 1775800 1378100 5777400 2868400 2909000 4619600 2369200 2250400 1842300 909950 932380 16443 2065 17149 85346;85347;85348;85349;85350;85351;85352;85353;85354 86602;86603;86604;86605;86606;86607;86608;86609;86610 86607 9 ITENIGCVMTGMTADSR PDKLLDSSTVTHLFKITENIGCVMTGMTAD ENIGCVMTGMTADSRSQVQRARYEAANWKY K I T S R S 1 1 1 1 1 0 1 2 0 2 0 0 2 0 0 1 3 0 0 1 0 0 17 0 1854.8274 G3V5Z7;P60900;G3V295;G3V3I1 G3V5Z7 72 88 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 0.0011568 53.252 By MS/MS By MS/MS 1 1 1.1743 1.0532 21.246 2 Median 1.2973 1.224 NaN 1 1 Median 1.0629 0.90631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5015700 2215500 2800200 4110600 1794700 2315900 905090 420760 484330 0 0 0 0 0 0 0 0 0 0 0 0 16444 1122 17150 85355;85356 86611;86612 86611 2 ITESDLSQLTASIR TSQLNVGTSTDVSLKITESDLSQLTASIRA KITESDLSQLTASIRAPSGNEEPCLLKRLP K I T I R A 1 1 0 1 0 1 1 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 14 0 1532.8046 Q14315 Q14315 1969 1982 FLNC Filamin-C yes yes 2;3 2.8662E-82 255.19 By MS/MS By MS/MS By MS/MS 3 3 1 1.1222 1.0897 16.102 7 Median 1.2868 1.2357 6.7359 3 1 Plateau 1.0863 0.932 9.1931 3 0 Median 1.1222 1.2401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91642000 40046000 51597000 53820000 22749000 31071000 33635000 15315000 18320000 4186600 1981000 2205600 0 0 0 0 0 0 0 0 0 16445 2871 17151 85357;85358;85359;85360;85361;85362;85363 86613;86614;86615;86616;86617;86618;86619 86614 7 ITESEEVVSR RVRSLETENAGLRLRITESEEVVSREVSGI GLRLRITESEEVVSREVSGIKAAYEAELGD R I T S R E 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 2 1 0 0 2 0 0 10 0 1147.5721 P02545;Q3BDU5 P02545 63 72 LMNA Prelamin-A/C;Lamin-A/C no no 2 2.706E-07 159.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 5 6 1.2747 1.1751 25.884 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1645 1.1537 15.228 3 0 Median 1.4995 1.281 30.429 4 0 Median 1.0419 1.0443 6.6575 4 1 Median 1.596 1.3279 30.404 5 3 Median 844260000 379550000 464710000 0 0 0 0 0 0 215840000 100070000 115770000 57895000 22798000 35097000 416920000 195930000 220990000 153600000 60752000 92852000 16446 1834;3010 17152 85364;85365;85366;85367;85368;85369;85370;85371;85372;85373;85374;85375;85376;85377;85378;85379;85380;85381;85382 86620;86621;86622;86623;86624;86625;86626;86627;86628;86629;86630;86631;86632;86633;86634;86635;86636;86637;86638;86639;86640;86641;86642;86643;86644;86645;86646;86647;86648;86649;86650;86651;86652;86653;86654;86655 86634 36 ITESSSTKEDLLR ALQCTHYVILWQLAKITESSSTKEDLLRLK AKITESSSTKEDLLRLKKQMRVFCQICQHY K I T L R L 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 3 2 0 0 0 0 0 13 1 1477.7624 Q8N3U4 Q8N3U4 748 760 STAG2 Cohesin subunit SA-2 yes yes 2;3 1.3625E-05 151.15 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 0.96019 0.97555 18.055 9 Median 1.2981 1.343 NaN 1 0 Median 1.5004 1.4297 NaN 1 0 Median 0.80874 0.91613 3.9912 2 0 Median 0.96019 0.92275 NaN 1 0 Median 0.83701 0.934 12.369 2 1 Median 1.1682 1.0379 8.7683 2 0 Median 33280000 16410000 16870000 1383400 623440 760010 1328800 445270 883520 12777000 6590100 6186700 1166900 518280 648580 12067000 6290200 5776500 4557700 1943100 2614600 16447 3369 17153 85383;85384;85385;85386;85387;85388;85389;85390;85391 86656;86657;86658;86659;86660;86661;86662;86663;86664;86665 86661 10 ITESVAETAQTIKK FGNYLFNFASAATKKITESVAETAQTIKKS KITESVAETAQTIKKSVEEGKIDGIIDKTI K I T K K S 2 0 0 0 0 1 2 0 0 2 0 2 0 0 0 1 3 0 0 1 0 0 14 1 1517.8301 Q96A49 Q96A49 72 85 SYAP1 Synapse-associated protein 1 yes yes 3 0.0064365 26.435 By MS/MS By matching 1 1 1.4999 1.4299 34.874 2 Median 1.1592 1.1174 NaN 1 0 Median 1.9408 1.8298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3600800 1272500 2328300 2640900 995020 1645900 959910 277480 682430 0 0 0 0 0 0 0 0 0 0 0 0 16448 3594 17154 85392;85393 86666;86667 86666 2 ITFDAFPGEPDKELNPK IEILAPPNGSVPGDRITFDAFPGEPDKELN FDAFPGEPDKELNPKKKIWEQIQPDLHTND R I T P K K 1 0 1 2 0 0 2 1 0 1 1 2 0 2 3 0 1 0 0 0 0 0 17 1 1916.952 Q12904 Q12904 251 267 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 3 0.020238 19.39 By MS/MS By matching 1 1 0.69153 0.66769 4.3801 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65782 0.68869 NaN 1 0 Median 0.72696 0.64733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5772500 3706400 2066100 0 0 0 0 0 0 5018200 3232800 1785400 754280 473620 280650 0 0 0 0 0 0 16449 2768 17155 85394;85395 86668 86668 1 ITFHGEGDQEPGLEPGDIIIVLDQK ILEVHIDKGMKDGQKITFHGEGDQEPGLEP PGLEPGDIIIVLDQKDHAVFTRRGEDLFMC K I T Q K D 0 0 0 3 0 2 3 4 1 4 2 1 0 1 2 0 1 0 0 1 0 0 25 0 2719.3705 P31689 P31689 222 246 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 3.5795E-08 39.21 By MS/MS By MS/MS 1 1 0.81657 0.75177 8.2983 2 Median NaN NaN NaN 0 0 Median 0.81169 0.70892 NaN 1 0 Median 0.82147 0.7972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10781000 5407300 5374100 0 0 0 1133300 617450 515850 9648100 4789800 4858300 0 0 0 0 0 0 0 0 0 16450 2204 17156 85396;85397 86669;86670;86671;86672 86670 4 ITFHPYYTIK TGSNNPLGITSHSDKITFHPYYTIKDALGL SHSDKITFHPYYTIKDALGLLLFLLSLMTL K I T I K D 0 0 0 0 0 0 0 0 1 2 0 1 0 1 1 0 2 0 2 0 0 0 10 0 1281.6758 P00156 P00156 218 227 MT-CYB Cytochrome b yes yes 3 0.043849 18.136 By MS/MS By matching 1 1 1.3602 1.2638 0.013898 2 Median 1.2772 1.2639 NaN 1 0 Median 1.4485 1.2637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5338200 2190000 3148200 2415300 869940 1545300 2922900 1320000 1602900 0 0 0 0 0 0 0 0 0 0 0 0 16451 1811 17157 85398;85399 86673 86673 1 ITFLLQAIR KQAEETYENIPGQSKITFLLQAIRNTTAAE IPGQSKITFLLQAIRNTTAAEEARQMAAVL K I T I R N 1 1 0 0 0 1 0 0 0 2 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1073.6597 O00410;H0Y8C6;E7ETV3;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5;C9J875 O00410 42 50 IPO5 Importin-5 yes no 2 0.0034481 65.038 By MS/MS By matching By matching By matching By matching By matching 5 3 2 2 1 1 1.2324 1.1568 32.685 14 Median 1.2513 1.2206 9.621 5 0 Median 1.1052 0.92703 14.657 3 0 Plateau 1.5005 1.5951 5.6375 2 0 Median 1.145 1.0097 16.11 2 0 Median 2.5436 2.6929 NaN 1 0 Median 1.0834 0.95802 NaN 1 0 Median 21615000 9909300 11706000 9329300 4081500 5247800 10227000 5080400 5147000 1108300 453160 655150 276900 118180 158720 588570 139470 449100 84639 36595 48043 16452 1460 17158 85400;85401;85402;85403;85404;85405;85406;85407;85408;85409;85410;85411;85412;85413 86674 86674 1 ITFQESK KYRKIHLFDIDVPGKITFQESKTLSPGDSF FDIDVPGKITFQESKTLSPGDSFSTFDTPY K I T S K T 0 0 0 0 0 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 7 0 851.43888 Q9NQR4;H7C579 Q9NQR4 124 130 NIT2 Omega-amidase NIT2 yes no 2 0.059615 37.558 By MS/MS 1 1.1222 1.0981 NaN 1 Median 1.1222 1.0981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1488600 602500 886130 1488600 602500 886130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16453 4064 17159 85414 86675 86675 1 ITGDPYK IQDGPQNTGADKPLRITGDPYKVQQAKEMV TGADKPLRITGDPYKVQQAKEMVLELIRDQ R I T Y K V 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 7 0 792.40177 Q96AE4;E9PEB5 Q96AE4 237 243 FUBP1 Far upstream element-binding protein 1 yes no 2 0.052693 51.787 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2198200 0 2198200 0 0 0 0 0 0 2198200 0 2198200 0 0 0 0 0 0 0 0 0 16454 3599 17160 85415 86676 86676 1 ITGEAFVQFASQELAEK IVPNGITLPVDPEGKITGEAFVQFASQELA GEAFVQFASQELAEKALGKHKERIGHRYIE K I T E K A 3 0 0 0 0 2 3 1 0 1 1 1 0 2 0 1 1 0 0 1 0 0 17 0 1866.9363 P52597 P52597 151 167 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 4.4106E-24 185.9 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 3 2 0.98063 0.92665 31.699 13 Median 0.96179 0.92665 NaN 1 0 Median 1.1253 0.95841 6.6254 4 0 Median 0.94352 0.90212 13.595 3 0 Median NaN NaN NaN 0 0 Median 0.97948 0.93749 66.754 3 0 Median 0.98832 0.79848 6.3645 2 0 Median 156610000 75672000 80942000 528190 258850 269340 12493000 5746700 6746500 57483000 27599000 29884000 0 0 0 75077000 37461000 37616000 11033000 4605600 6427300 16455 2452 17161 85416;85417;85418;85419;85420;85421;85422;85423;85424;85425;85426;85427;85428 86677;86678;86679;86680;86681;86682;86683;86684;86685;86686;86687;86688;86689 86688 13 ITGMLLEIDNSELLHMLESPESLR LFPLIQAMHPTLAGKITGMLLEIDNSELLH NSELLHMLESPESLRSKVDEAVAVLQAHQA K I T L R S 0 1 1 1 0 0 4 1 1 2 6 0 2 0 1 3 1 0 0 0 0 0 24 0 2739.3823 B1ANR0;Q13310;H0YER0;H0Y5F5;H0Y6X6;P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YB75;H0YAS6;H0YAS7 P11940 581 604 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 3 2.8461E-21 97.776 By matching By MS/MS 1 2 1.1787 1.0214 20.129 3 Median 1.2922 1.2597 NaN 1 0 Median 1.0711 0.92758 13.629 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5806900 2741700 3065100 409900 190770 219130 5397000 2551000 2846000 0 0 0 0 0 0 0 0 0 0 0 0 16456 1973;576;1151 17162 85429;85430;85431 86690;86691 86690 224 2 ITGNMGLAMK GKMNPQSAFFQGKLKITGNMGLAMKLQNLQ QGKLKITGNMGLAMKLQNLQLQPGNAKL__ K I T M K L 1 0 1 0 0 0 0 2 0 1 1 1 2 0 0 0 1 0 0 0 0 0 10 0 1034.5253 P22307 P22307 525 534 SCP2 Non-specific lipid-transfer protein yes yes 2 0.00057108 103.87 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.315 1.2148 12.994 7 Median 1.218 1.1039 9.6069 2 1 Median 1.5992 1.3274 15.971 3 0 Median 1.2655 1.2148 NaN 1 0 Median 1.728 1.4121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200170000 80049000 120120000 91240000 37747000 53493000 100040000 38728000 61307000 8121300 3283900 4837400 773730 290100 483630 0 0 0 0 0 0 16457 2099 17163;17164 85432;85433;85434;85435;85436;85437;85438 86692;86693;86694;86695;86696;86697;86698 86693 858;859 7 ITGNPVVTNR LAAQLKPMTPFKRTRITGNPVVTNRIEEGE FKRTRITGNPVVTNRIEEGERPDRAKGYDL R I T N R I 0 1 2 0 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 2 0 0 10 0 1069.588 Q9HCE1;Q5JR04 Q9HCE1 261 270 MOV10 Putative helicase MOV-10 yes no 2 0.00037209 81.338 By MS/MS 1 1.4461 1.2182 NaN 1 Median NaN NaN NaN 0 0 Median 1.4461 1.2182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5683900 2366100 3317800 0 0 0 5683900 2366100 3317800 0 0 0 0 0 0 0 0 0 0 0 0 16458 4029 17165 85439 86699 86699 1 ITGPPERDDPYPVLFR TMIQQPVKSFPTMARITGPPERDDPYPVLF TGPPERDDPYPVLFRYLHSHHFLELVTLLL R I T F R Y 0 2 0 2 0 0 1 1 0 1 1 0 0 1 4 0 1 0 1 1 0 0 16 1 1870.9577 Q69YN4;H0YBN5 Q69YN4 659 674 KIAA1429 Protein virilizer homolog yes no 3 0.00036079 54.898 By MS/MS 1 0.44841 0.56644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44841 0.56644 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8126800 5921400 2205400 0 0 0 0 0 0 8126800 5921400 2205400 0 0 0 0 0 0 0 0 0 16459 3130 17166 85440 86700 86700 1 ITGQLESLESR GGRIAQSAELADREKITGQLESLESRWTEL DREKITGQLESLESRWTELLSKAAARQKQL K I T S R W 0 1 0 0 0 1 2 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1231.6408 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;A0A0A6YYJ5 H3BPE1 5418 5428 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 6.8516E-07 167.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0082 0.86284 11.148 4 Median 0.86292 0.8392 NaN 1 0 Median 1.0657 0.85174 NaN 1 0 Median 1.0124 1.0657 NaN 1 0 Median 1.004 0.87408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74602000 38367000 36235000 21474000 12099000 9374500 36221000 18367000 17855000 15031000 7055700 7975200 1876400 845600 1030800 0 0 0 0 0 0 16460 1220 17167 85441;85442;85443;85444;85445 86701;86702;86703;86704;86705;86706;86707 86704 6 ITHLSTLQVGSLNVK KVYGGDDRIGALTHKITHLSTLQVGSLNVK ITHLSTLQVGSLNVKCLATPCHTSGHICYF K I T V K C 0 0 1 0 0 1 0 1 1 1 3 1 0 0 0 2 2 0 0 2 0 0 15 0 1608.9199 H3BPK3;Q16775;H3BPQ4;H3BQW8 H3BPK3 68 82 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 2;3 4.6817E-08 94.023 By MS/MS By MS/MS By MS/MS By matching 5 3 2 1 1.0706 1.0033 10.581 11 Median 1.0494 0.97555 2.3874 5 2 Median 1.3538 1.1333 12.832 3 0 Median 1.0641 0.99843 0.70227 2 0 Median 1.3173 1.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 170950000 83709000 87241000 135700000 67689000 68010000 12397000 5365400 7031200 21158000 9920000 11238000 1695900 734700 961180 0 0 0 0 0 0 16461 1224 17168 85446;85447;85448;85449;85450;85451;85452;85453;85454;85455;85456 86708;86709;86710;86711;86712;86713;86714;86715;86716;86717;86718;86719;86720 86711 13 ITHQIVDRPGQQTSVIGR KSLCIGATYDVTDSRITHQIVDRPGQQTSV QIVDRPGQQTSVIGRCYVQPQWVFDSVNAR R I T G R C 0 2 0 1 0 3 0 2 1 3 0 0 0 0 1 1 2 0 0 2 0 0 18 1 2004.0865 B5MCF9;O00541;B3KXD6 B5MCF9 356 373 PES1 Pescadillo homolog yes no 2;3;4 3.1951E-14 152.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 11 6 1.0826 1.0203 18.129 26 Median 1.2343 1.2161 11.756 2 1 Median 1.1753 1.0674 9.673 2 0 Median 0.79859 0.89323 9.3615 3 0 Plateau 1.2082 1.1258 35.437 3 0 Plateau 0.9368 1.0206 18.026 10 1 Median 1.145 1.0097 5.2286 6 0 Median 392490000 195310000 197170000 16728000 7414300 9313900 16173000 7742100 8430800 96965000 52546000 44418000 22801000 10180000 12620000 186170000 92502000 93663000 53657000 24929000 28728000 16462 618 17169 85457;85458;85459;85460;85461;85462;85463;85464;85465;85466;85467;85468;85469;85470;85471;85472;85473;85474;85475;85476;85477;85478;85479;85480;85481;85482;85483 86721;86722;86723;86724;86725;86726;86727;86728;86729;86730;86731;86732;86733;86734;86735;86736;86737;86738;86739;86740;86741;86742;86743;86744;86745;86746;86747;86748;86749;86750;86751;86752;86753;86754;86755;86756;86757;86758;86759 86727 39 ITIADCGQLE AMERFGSRNGKTSKKITIADCGQLE_____ KTSKKITIADCGQLE_______________ K I T L E - 1 0 0 1 1 1 1 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1118.5278 P62937 P62937 156 165 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 0.062389 41.652 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51842000 0 0 0 0 0 0 0 0 51842000 0 0 0 0 0 0 0 0 0 0 0 16463 2611 17170 85484 86760 86760 1 ITIGQAPTEK TWQRVLDTNDRFLRKITIGQAPTEKGHTRT RFLRKITIGQAPTEKGHTRTAQFDISVASE K I T E K G 1 0 0 0 0 1 1 1 0 2 0 1 0 0 1 0 2 0 0 0 0 0 10 0 1056.5815 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 544 553 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00057664 93.598 By MS/MS By MS/MS By matching 1 2 1 1.1207 1.0249 14.579 4 Median 1.0606 1.0482 NaN 1 0 Median 1.0698 0.92827 10.818 2 0 Median 1.2058 1.2255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31923000 14497000 17426000 3265800 1443200 1822700 27065000 12302000 14763000 1592300 752120 840140 0 0 0 0 0 0 0 0 0 16464 1968 17171 85485;85486;85487;85488 86761;86762;86763;86764 86764 4 ITIIPQDPVLFSGSLR GINIAKIGLHDLRFKITIIPQDPVLFSGSL TIIPQDPVLFSGSLRMNLDPFSQYSDEEVW K I T L R M 0 1 0 1 0 1 0 1 0 3 2 0 0 1 2 2 1 0 0 1 0 0 16 0 1754.9931 A0A0A0MS99;I3L4X2;P33527 A0A0A0MS99 1054 1069 ABCC1 Multidrug resistance-associated protein 1 yes no 2 0.0057351 32.498 By MS/MS By matching 2 1 0.77864 0.74197 18.107 3 Plateau 0.60046 0.59937 11.932 2 0 Median 0.92921 0.79106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2783400 1579400 1204000 1629700 991100 638600 1153700 588270 565410 0 0 0 0 0 0 0 0 0 0 0 0 16465 178 17172 85489;85490;85491 86765 86765 1 ITIPITPAFLGQLR AENNCLYIEYGINEKITIPITPAFLGQLRS KITIPITPAFLGQLRSGRSIEKVSFYLGFS K I T L R S 1 1 0 0 0 1 0 1 0 3 2 0 0 1 2 0 2 0 0 0 0 0 14 0 1538.9184 Q5K651 Q5K651 1549 1562 SAMD9 Sterile alpha motif domain-containing protein 9 yes yes 2 0.016466 29.767 By MS/MS By matching By matching 1 1 2 0.83768 0.88461 25.302 4 Median 0.77224 0.77199 NaN 1 0 Median 0.75215 0.66937 NaN 1 0 Median 0.99957 1.0881 10.023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1339500 699790 639670 791470 409530 381930 59991 34351 25640 488000 255910 232100 0 0 0 0 0 0 0 0 0 16466 3063 17173 85492;85493;85494;85495 86766;86767 86766 2 ITIPYGR GAGTSQDGTSKNWFKITIPYGRKYDKAWLL GTSKNWFKITIPYGRKYDKAWLLSMIQSKC K I T G R K 0 1 0 0 0 0 0 1 0 2 0 0 0 0 1 0 1 0 1 0 0 0 7 0 818.46504 Q9UBU9;E9PIN3;E9PLA7 Q9UBU9 122 128 NXF1 Nuclear RNA export factor 1 yes no 2 0.019213 79.454 By MS/MS 1 1.016 1.0356 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.016 1.0356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10466000 5169300 5296800 0 0 0 0 0 0 10466000 5169300 5296800 0 0 0 0 0 0 0 0 0 16467 4249 17174 85496 86768 86768 1 ITISPLQELTLYNPER EGRNLKKIEQDTDTKITISPLQELTLYNPE TISPLQELTLYNPERTITVKGNVETCAKAE K I T E R T 0 1 1 0 0 1 2 0 0 2 3 0 0 0 2 1 2 0 1 0 0 0 16 0 1886.0149 O00425 O00425 310 325 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.4513E-10 113.65 By MS/MS By MS/MS By matching By MS/MS By matching 3 1 1 2 1 0.80833 0.72831 39.218 8 Median 0.46529 0.46807 41.557 3 0 Median 0.80473 0.69535 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91404 0.78148 NaN 1 0 Median 0.82978 0.85954 7.0808 2 0 Median 0.91698 0.76284 NaN 1 0 Median 11713000 6626600 5086300 6819000 4085700 2733300 1754900 923320 831590 0 0 0 287250 154470 132780 2542400 1316500 1225900 309390 146560 162820 16468 1462 17175 85497;85498;85499;85500;85501;85502;85503;85504 86769;86770;86771;86772;86773;86774 86774 6 ITISSLQDLSIYNPER EGRNLKKIEHETGTKITISSLQDLSIYNPE TISSLQDLSIYNPERTITVKGTVEACASAE K I T E R T 0 1 1 1 0 1 1 0 0 3 2 0 0 0 1 3 1 0 1 0 0 0 16 0 1847.9629 F8W930;Q9Y6M1 F8W930 314 329 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 2.1098E-10 108.37 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.88649 0.76788 25.073 5 Median 0.70393 0.67225 NaN 1 0 Median 0.88649 0.76788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0441 1.0804 3.1745 2 0 Median 0.75186 0.64848 NaN 1 0 Median 20419000 11335000 9083800 9348600 5528800 3819800 4677400 2477600 2199700 0 0 0 0 0 0 3502700 1821500 1681200 2890600 1507600 1383000 16469 1088 17176 85505;85506;85507;85508;85509 86775;86776;86777;86778;86779;86780 86776 6 ITISSLQDLTLYNPER EGRNLKKVEQDTETKITISSLQDLTLYNPE TISSLQDLTLYNPERTITVKGAIENCCRAE K I T E R T 0 1 1 1 0 1 1 0 0 2 3 0 0 0 1 2 2 0 1 0 0 0 16 0 1861.9785 Q9NZI8 Q9NZI8 310 325 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 3.5582E-10 116.01 By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1.2341 1.0879 46.857 7 Median 0.85328 0.80908 NaN 1 0 Median 1.2032 1.0416 11.754 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3229 1.4012 NaN 1 0 Median 1.2341 1.0879 69.742 3 0 Median 30293000 13835000 16457000 13343000 6927100 6416300 8380100 3071600 5308500 0 0 0 0 0 0 2740900 1147000 1593900 5828200 2689400 3138800 16470 4188 17177 85510;85511;85512;85513;85514;85515;85516 86781;86782;86783;86784;86785;86786;86787 86785 7 ITITGYR PSSQMIEVQEGQNLKITITGYRTAYSCYGT VQEGQNLKITITGYRTAYSCYGTVSSLNGE K I T Y R T 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 2 0 1 0 0 0 7 0 822.45995 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7;A0A087WTD5 J3KN36 952 958 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.0069988 90.986 By MS/MS 1 1.3384 1.1255 NaN 1 Median NaN NaN NaN 0 0 Median 1.3384 1.1255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6359200 2605300 3753900 0 0 0 6359200 2605300 3753900 0 0 0 0 0 0 0 0 0 0 0 0 16471 117;1301 17178 85517 86788;86789 86789 2 ITITNDK LNVTATDKSTGKANKITITNDKGRLSKEEI KSTGKANKITITNDKGRLSKEEIERMVQEA K I T D K G 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 2 0 0 0 0 0 7 0 803.43888 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;P17066;Q53FA3;P34931;P54652 A0A0G2JIW1 502 508 HSPA1B;HSPA1A;HSPA8;HSPA6;HSPA1L;HSPA2 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like;Heat shock-related 70 kDa protein 2 no no 2 0.00016537 150.02 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 2 1.1611 1.0183 11.935 9 Median 1.2368 1.2053 3.6569 2 0 Median 1.1595 0.991 3.8476 2 0 Median 1.1595 1.1658 NaN 1 0 Median 1.2446 1.0603 NaN 1 0 Median 0.97541 1.0014 NaN 1 0 Median 1.0858 0.91522 12.491 2 0 Median 191300000 83913000 107390000 12769000 5482200 7287000 158130000 69220000 88907000 15749000 7088600 8660600 2814900 1219400 1595400 1277300 646050 631250 566410 257230 309180 16472 278;1950;2229;2035;2483 17179 85518;85519;85520;85521;85522;85523;85524;85525;85526 86790;86791;86792;86793;86794;86795;86796;86797;86798;86799;86800;86801 86797 12 ITITNDKGR LNVTATDKSTGKANKITITNDKGRLSKEEI TGKANKITITNDKGRLSKEEIERMVQEAEK K I T G R L 0 1 1 1 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 0 0 0 9 1 1016.5615 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;P17066;Q53FA3;P34931;P54652 A0A0G2JIW1 502 510 HSPA1B;HSPA1A;HSPA8;HSPA6;HSPA1L;HSPA2 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like;Heat shock-related 70 kDa protein 2 no no 2 0.002403 119.27 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 5 2 1 1 3 3 1.18 1.2382 28.5 15 Median 1.2962 1.329 28.786 5 0 Median 0.96384 0.87561 27.212 2 0 Median 1.171 1.243 NaN 1 0 Median 1.0858 0.99554 NaN 1 0 Median 1.1324 1.2778 12.974 3 0 Median 1.2167 1.0683 18.039 3 0 Plateau 64164000 28306000 35858000 29751000 12669000 17082000 21981000 10010000 11971000 6350300 2958000 3392300 153770 62570 91201 4565100 1984400 2580800 1362500 621220 741310 16473 278;1950;2229;2035;2483 17180 85527;85528;85529;85530;85531;85532;85533;85534;85535;85536;85537;85538;85539;85540;85541 86802;86803;86804;86805;86806;86807;86808;86809;86810 86806 9 ITITNDQNR LRVTAEDKGTGNKNKITITNDQNRLTPEEI TGNKNKITITNDQNRLTPEEIERMVNDAEK K I T N R L 0 1 2 1 0 1 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 9 0 1073.5465 P11021 P11021 524 532 HSPA5 78 kDa glucose-regulated protein yes yes 2 2.2852E-34 187.55 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1 1.1359 1.153 9.1066 8 Median 1.0832 1.0407 3.6647 2 0 Median 1.3397 1.1574 0.3358 2 0 Median 1.0974 1.1513 NaN 1 0 Median 1.4724 1.2323 NaN 1 0 Median 1.1158 1.1901 NaN 1 0 Median 1.1431 0.93957 NaN 1 0 Median 65184000 23531000 41653000 16790000 7903200 8887000 40787000 12159000 28629000 4941100 2452300 2488700 909600 324910 584680 1102200 415270 686890 653280 276350 376930 16474 1948 17181 85542;85543;85544;85545;85546;85547;85548;85549;85550 86811;86812;86813;86814;86815;86816;86817;86818;86819;86820;86821;86822 86819 12 ITKFENAFLSHVVSQHQALLGTIR YAGVRGYLDKLEPSKITKFENAFLSHVVSQ SHVVSQHQALLGTIRADGKISEQSDAKLKE K I T I R A 2 1 1 0 0 2 1 1 2 2 3 1 0 2 0 2 2 0 0 2 0 0 24 1 2708.4762 P25705 P25705 504 527 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 4 5.2763E-08 45.011 By MS/MS By matching 1 1 1.2271 1.1744 18.093 2 Median 1.0379 1.0333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4507 1.3346 NaN 1 0 Median 20133000 8850200 11282000 19648000 8660800 10988000 0 0 0 0 0 0 0 0 0 0 0 0 484120 189350 294770 16475 2135 17182 85551;85552 86823;86824 86823 2 ITKPGSIDSNNQLFAPGGR ISKGSRPIDTSRLTKITKPGSIDSNNQLFA GSIDSNNQLFAPGGRLSWGKGSSGGSGAKP K I T G R L 1 1 2 1 0 1 0 3 0 2 1 1 0 1 2 2 1 0 0 0 0 0 19 1 1971.0174 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 909 927 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 2.3553E-17 111.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1 2 0.76643 0.77262 39.766 14 Median 0.73805 0.73449 61.73 4 1 Median 0.7328 0.67868 11.484 3 1 Median 0.79308 0.92375 13.223 2 0 Median 0.81452 0.77525 4.8484 2 0 Median 1.2947 1.4723 NaN 1 0 Median 0.81871 0.7214 14.055 2 2 Median 351040000 192450000 158590000 204230000 113710000 90516000 51931000 28507000 23424000 58618000 32498000 26120000 16685000 9019800 7665200 16273000 6977700 9295300 3305500 1738500 1567000 16476 894 17183 85553;85554;85555;85556;85557;85558;85559;85560;85561;85562;85563;85564;85565;85566 86825;86826;86827;86828;86829;86830;86831;86832;86833;86834;86835;86836;86837;86838;86839;86840;86841;86842;86843;86844;86845 86830 21 ITLDLIR RVEVQVLNIDIPRSRITLDLIRVL______ NIDIPRSRITLDLIRVL_____________ R I T I R V 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 7 0 842.52255 Q8N5C6 Q8N5C6 987 993 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 0.026054 53.554 By matching By MS/MS By matching 1 2 1 1.2941 1.2739 25.59 4 Median NaN NaN NaN 0 0 Median 2.1851 1.9191 NaN 1 0 Median 1.0505 1.136 11.259 2 0 Median 1.4891 1.3193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3807000 1658700 2148300 0 0 0 262760 89924 172830 3378900 1505400 1873500 165320 63368 101960 0 0 0 0 0 0 16477 3377 17184 85567;85568;85569;85570 86846 86846 1 ITLDNAYMEK SGTAEVELKKGATLKITLDNAYMEKCDENI GATLKITLDNAYMEKCDENILWLDYKNICK K I T E K C 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 10 0 1196.5747 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618;B4DNK4 P14618 142 151 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00048497 102.07 By MS/MS By MS/MS By MS/MS By MS/MS 8 9 4 2 1.1836 1.1157 26.313 23 Median 1.2641 1.2083 19.325 8 1 Median 1.1256 0.95043 24.789 9 2 Median 1.2457 1.2863 3.2018 4 0 Median 1.3606 1.1632 5.8922 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 602580000 267530000 335050000 320090000 140770000 179310000 229520000 104130000 125390000 45847000 19690000 26157000 7120600 2929900 4190600 0 0 0 0 0 0 16478 2005;1237 17185;17186 85571;85572;85573;85574;85575;85576;85577;85578;85579;85580;85581;85582;85583;85584;85585;85586;85587;85588;85589;85590;85591;85592;85593 86847;86848;86849;86850;86851;86852;86853;86854;86855;86856;86857;86858;86859;86860;86861;86862;86863;86864;86865;86866;86867;86868;86869;86870;86871;86872;86873 86849 414 27 ITLPNDETR LETVDPTYIFHPRCRITLPNDETRVNATME FHPRCRITLPNDETRVNATMEDVNDWLTEL R I T T R V 0 1 1 1 0 0 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 9 0 1057.5404 O95155;K7EP75 O95155 718 726 UBE4B Ubiquitin conjugation factor E4 B yes no 2 0.040164 52.482 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16479 1748 17187 85594 86874 86874 1 ITLPSHPALGTPK ISIQRPAQSRDVTTRITLPSHPALGTPKQQ TRITLPSHPALGTPKQQLHTMAQKTIFSTG R I T P K Q 1 0 0 0 0 0 0 1 1 1 2 1 0 0 3 1 2 0 0 0 0 0 13 0 1330.7609 A0A2R8YDB8;H7BXF5;Q9H0E3 A0A2R8YDB8 319 331 SAP130 Histone deacetylase complex subunit SAP130 yes no 3 0.0065178 28.789 By MS/MS By matching 1 1 0.53885 0.51066 54.826 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32413 0.34655 NaN 1 0 Median 0.8958 0.75249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10476000 6754400 3721900 0 0 0 0 0 0 9063400 6002500 3060800 1413000 751870 661100 0 0 0 0 0 0 16480 395 17188 85595;85596 86875 86875 1 ITLPVDFVTADK IVKDLMSKAEKNGVKITLPVDFVTADKFDE GVKITLPVDFVTADKFDENAKTGQATVASG K I T D K F 1 0 0 2 0 0 0 0 0 1 1 1 0 1 1 0 2 0 0 2 0 0 12 0 1317.718 P00558 P00558 280 291 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.00067049 62.303 By MS/MS By MS/MS By MS/MS 2 2 2 0.90958 0.91369 18.152 6 Median 0.90958 0.88812 2.3488 2 0 Median 0.81952 0.80583 31.976 2 0 Median 0.9684 1.0037 11.626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26245000 11999000 14246000 7484000 3638400 3845600 12819000 5662400 7156800 5942000 2698300 3243700 0 0 0 0 0 0 0 0 0 16481 1824 17189 85597;85598;85599;85600;85601;85602 86876;86877;86878;86879;86880;86881 86880 6 ITLPVDFVTADKFDENAK IVKDLMSKAEKNGVKITLPVDFVTADKFDE PVDFVTADKFDENAKTGQATVASGIPAGWM K I T A K T 2 0 1 3 0 0 1 0 0 1 1 2 0 2 1 0 2 0 0 2 0 0 18 1 2022.031 P00558 P00558 280 297 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 8.627E-15 120.63 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 3 0.97242 0.95198 19.005 16 Median 0.94666 0.89103 2.311 4 0 Median 1.1771 1.0773 22.574 4 0 Median 0.95174 1.0055 27.396 5 0 Median 1.1127 1.0569 8.3451 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 411050000 195410000 215640000 116920000 56513000 60405000 103990000 47657000 56333000 105470000 52791000 52683000 84667000 38448000 46219000 0 0 0 0 0 0 16482 1824 17190 85603;85604;85605;85606;85607;85608;85609;85610;85611;85612;85613;85614;85615;85616;85617;85618 86882;86883;86884;86885;86886;86887;86888;86889;86890;86891;86892;86893;86894;86895;86896;86897;86898;86899;86900;86901 86883 20 ITLQDVVSHSK LNLMDIKIGLLVKNKITLQDVVSHSKKLTK VKNKITLQDVVSHSKKLTKKNKEQLSDMMM K I T S K K 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 2 1 0 0 2 0 0 11 0 1225.6667 P46940;A0A0J9YXZ5;H0YLE8 P46940 925 935 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 4.1384E-05 136.57 By MS/MS By MS/MS By matching By matching By matching 6 4 2 1 1 1.0384 0.95342 27.673 13 Median 0.95845 0.95342 24.193 5 1 Median 1.0405 0.92202 21.261 4 0 Median 1.3271 1.4394 31.161 2 0 Median 0.82756 0.75015 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2155 1.0558 NaN 1 0 Median 84798000 40546000 44252000 59604000 29028000 30576000 20641000 9654500 10986000 3794900 1522000 2272800 606680 266540 340140 0 0 0 150800 74363 76441 16483 2350 17191 85619;85620;85621;85622;85623;85624;85625;85626;85627;85628;85629;85630;85631;85632 86902;86903;86904;86905;86906;86907;86908;86909;86910;86911 86905 10 ITLRPDPLPER DISTNKVEQIPYGERITLRPDPLPERSTFE YGERITLRPDPLPERSTFETEHAGQRDRYD R I T E R S 0 2 0 1 0 0 1 0 0 1 2 0 0 0 3 0 1 0 0 0 0 0 11 1 1305.7405 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1662 1672 YLPM1 YLP motif-containing protein 1 yes no 3 5.8713E-05 93.959 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.71823 0.82492 11.3 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68547 0.86591 9.006 2 2 Median 0.80813 0.76091 13.57 2 0 Median 0.65156 0.70484 NaN 1 0 Median 0.94076 0.85044 NaN 1 0 Median 44243000 26480000 17763000 0 0 0 0 0 0 30370000 17767000 12602000 1905300 851680 1053600 11405000 7544600 3860100 563160 316200 246960 16484 2395 17192 85633;85634;85635;85636;85637;85638 86912;86913;86914;86915;86916;86917 86915 6 ITLSKHQNVQLPR MSHLNGHKLHGKPIRITLSKHQNVQLPREG IRITLSKHQNVQLPREGQEDQGLTKDYGNS R I T P R E 0 1 1 0 0 2 0 0 1 1 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1532.8787 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20;K7EK45;A0A087WUW5 A0A0U1RRM4 463 475 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 0.0038155 35.204 By MS/MS By MS/MS 1 1 0.70067 0.71565 30.846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80062 0.89008 NaN 1 0 Median 0.61319 0.57541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3475900 1789500 1686500 0 0 0 0 0 0 1645600 849680 795900 1830300 939780 890560 0 0 0 0 0 0 16485 312 17193 85639;85640 86918;86919 86918 2 ITLTSDPR ______________________________ RSKVSFKITLTSDPRLPYKVLSVPESTPFT K I T P R L 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 0 0 0 8 0 901.4869 H0Y614;P61960 H0Y614 9 16 UFM1 Ubiquitin-fold modifier 1 yes no 2 0.0094683 60.76 By MS/MS By MS/MS By matching 2 1 1 0.94976 0.8864 13.582 4 Median 0.94589 0.90592 3.0017 2 0 Median 1.0953 0.8859 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9518 0.6874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11251000 5707200 5544300 6911700 3672600 3239100 2146700 978530 1168200 0 0 0 2193100 1056100 1137000 0 0 0 0 0 0 16486 1153 17194 85641;85642;85643;85644 86920;86921;86922 86922 3 ITLVLQQPQSGGPQGHR AVTLTSTPTQGESKRITLVLQQPQSGGPQG LVLQQPQSGGPQGHRHVVLGSLPGKIVLQG R I T H R H 0 1 0 0 0 4 0 3 1 1 2 0 0 0 2 1 1 0 0 1 0 0 17 0 1814.9751 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4;G3V2T9 Q9HCK8 287 303 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 3 6.618E-06 62.861 By MS/MS By MS/MS By matching 2 1 1 0.93202 0.8812 18.336 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75556 0.81855 29.293 2 1 Median 0.94461 0.82217 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1331 0.94447 NaN 1 0 Median 15781000 8495800 7285100 0 0 0 0 0 0 13818000 7384000 6433800 1427400 870520 556890 0 0 0 535710 241270 294430 16487 4030 17195 85645;85646;85647;85648 86923;86924;86925 86923 3 ITLVSAAPGK KAMTKARNFERVLGKITLVSAAPGKVICEM RVLGKITLVSAAPGKVICEMKVEEEHTNAI K I T G K V 2 0 0 0 0 0 0 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 955.57023 Q9NPJ3 Q9NPJ3 28 37 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes yes 2 0.00039696 96.948 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.3673 1.1209 10.311 5 Plateau 0.95682 0.88672 5.5988 2 0 Median 1.3673 1.1209 NaN 1 0 Median 1.0401 0.99324 NaN 1 0 Median 1.2686 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122470000 55071000 67394000 22813000 11260000 11553000 65365000 26647000 38718000 15734000 8558000 7176400 18553000 8606300 9946400 0 0 0 0 0 0 16488 4055 17196 85649;85650;85651;85652;85653 86926;86927;86928;86929;86930;86931;86932;86933;86934 86932 9 ITLVSSGSGTMGAAK QVAEEISGPLTSANKITLVSSGSGTMGAAK ITLVSSGSGTMGAAKVTGEVLDILTRLPES K I T A K V 2 0 0 0 0 0 0 3 0 1 1 1 1 0 0 3 2 0 0 1 0 0 15 0 1378.7126 O75955;A0A140T9R1;A0A140T9W4;A0A140T974 O75955 378 392 FLOT1 Flotillin-1 yes no 2;3 7.0744E-10 111.63 By MS/MS By MS/MS 2 1 2.1296 2.0213 51.723 3 Median 1.3877 1.3059 61.783 2 0 Median 2.4766 2.1095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14189000 4919100 9270100 9726100 3711500 6014600 4463200 1207600 3255500 0 0 0 0 0 0 0 0 0 0 0 0 16489 1712 17197 85654;85655;85656 86935;86936;86937 86936 3 ITMELFSNIVPR VVFFDVCADGEPLGRITMELFSNIVPRTAE LGRITMELFSNIVPRTAENFRALCTGEKGF R I T P R T 0 1 1 0 0 0 1 0 0 2 1 0 1 1 1 1 1 0 0 1 0 0 12 0 1418.7592 P49792 P49792 3080 3091 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 6.035E-06 111.61 By MS/MS By matching 2 1 0.84733 0.89114 3.7428 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79895 0.86314 4.5149 2 1 Median 1.0266 0.89284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18742000 9897300 8845200 0 0 0 0 0 0 18601000 9834000 8767200 141240 63240 77997 0 0 0 0 0 0 16490 2401 17198;17199 85657;85658;85659 86938;86939;86940;86941;86942 86940 1112 5 ITMEYSSSGK AQDIINFFAPLKPVRITMEYSSSGKATGEA LKPVRITMEYSSSGKATGEADVHFETHEDA R I T G K A 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 3 1 0 1 0 0 0 10 0 1101.5012 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 366 375 GRSF1 G-rich sequence factor 1 yes no 2 0.00034968 84.213 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.131 1.0679 6.0312 4 Median 1.0679 1.0166 NaN 1 0 Median 1.3297 1.1294 NaN 1 0 Median 1.1321 1.1218 NaN 1 0 Median 1.1299 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18410000 8240500 10170000 3648400 1822900 1825500 6988600 2801500 4187000 3215400 1510300 1705100 4558100 2105800 2452300 0 0 0 0 0 0 16491 1035 17200 85660;85661;85662;85663 86943;86944;86945;86946 86946 4 ITMIAEPLEK SSLKCFAETPNKKNKITMIAEPLEKGLAED NKKNKITMIAEPLEKGLAEDIENEVVQITW K I T E K G 1 0 0 0 0 0 2 0 0 2 1 1 1 0 1 0 1 0 0 0 0 0 10 0 1143.6209 Q15029;K7EP67 Q15029 685 694 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.00037209 101.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 0.80663 0.81842 20.641 10 Median 1.0518 1.0143 NaN 1 0 Median 1.1127 0.94273 NaN 1 0 Median 0.80663 0.86472 0.67611 2 0 Median 1.0308 0.89594 22.243 2 0 Median 0.69715 0.71903 11.204 2 0 Median 0.71931 0.5961 6.6935 2 0 Median 133510000 69093000 64421000 19191000 8491800 10699000 9128800 4697700 4431100 51622000 27520000 24102000 17812000 8189300 9623200 30968000 17599000 13369000 4791600 2594600 2197000 16492 2917 17201;17202 85664;85665;85666;85667;85668;85669;85670;85671;85672;85673 86947;86948;86949;86950;86951;86952;86953;86954;86955;86956;86957;86958;86959 86952 1601 13 ITMLGIQGDLK GVLNLESPITTSTTKITMLGIQGDLKWSTD STTKITMLGIQGDLKWSTDPDKGLFISLPQ K I T L K W 0 0 0 1 0 1 0 2 0 2 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1187.6584 P04066 P04066 421 431 FUCA1 Tissue alpha-L-fucosidase yes yes 2 0.014119 37.191 By MS/MS By matching 1 1 1.4045 1.2844 36.962 2 Median 1.0286 0.989 NaN 1 0 Median 1.918 1.668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3909900 1734300 2175500 2584400 1318500 1265900 1325500 415810 909670 0 0 0 0 0 0 0 0 0 0 0 0 16493 1842 17203 85674;85675 86960 86960 1 ITNDFYPEEDGK KLKNVIHKIFSKFGKITNDFYPEEDGKTKG FGKITNDFYPEEDGKTKGYIFLEYASPAHA K I T G K T 0 0 1 2 0 0 2 1 0 1 0 1 0 1 1 0 1 0 1 0 0 0 12 0 1426.6252 P55884;C9JZG1 P55884 217 228 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 3.5722E-06 107.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.97642 0.93094 17.268 5 Median 1.0268 0.9938 NaN 1 0 Median 0.85986 0.74609 15.363 2 0 Median 0.92907 1.0249 NaN 1 1 Median 1.0885 0.93094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25873000 12551000 13322000 11072000 5519000 5552800 7730000 3917200 3812800 4357300 1919200 2438100 2714300 1195500 1518800 0 0 0 0 0 0 16494 2504 17204 85676;85677;85678;85679;85680;85681 86961;86962;86963;86964;86965;86966;86967;86968 86961 8 ITNDFYPEEDGKTK KLKNVIHKIFSKFGKITNDFYPEEDGKTKG KITNDFYPEEDGKTKGYIFLEYASPAHAVD K I T T K G 0 0 1 2 0 0 2 1 0 1 0 2 0 1 1 0 2 0 1 0 0 0 14 1 1655.7679 P55884;C9JZG1 P55884 217 230 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2;3 0.00032793 85.288 By MS/MS By MS/MS 2 2 0.96136 0.99525 21.731 4 Median 0.96136 1.0073 11.041 2 0 Median 0.91593 0.84967 31.705 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42502000 23774000 18728000 22343000 12331000 10012000 20160000 11443000 8716300 0 0 0 0 0 0 0 0 0 0 0 0 16495 2504 17205 85682;85683;85684;85685 86969;86970;86971;86972;86973 86969 5 ITNHIHVR AALEVVLAMYPKYDRITNHIHVRISHLPLV MYPKYDRITNHIHVRISHLPLVEELRSLRQ R I T V R I 0 1 1 0 0 0 0 0 2 2 0 0 0 0 0 0 1 0 0 1 0 0 8 0 988.55665 P49736;H0Y8E6 P49736 277 284 MCM2 DNA replication licensing factor MCM2 yes no 2 0.0075282 66.682 By MS/MS 2 1.3994 1.2282 24.246 2 Median NaN NaN NaN 0 0 Median 1.3994 1.2282 24.246 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3070800 1406900 1663900 0 0 0 3070800 1406900 1663900 0 0 0 0 0 0 0 0 0 0 0 0 16496 2393 17206 85686;85687 86974;86975 86975 2 ITNININQALSILK MIEVVLKVIERADEKITNININQALSILKH KITNININQALSILKHLKSYRRISPPVDLE K I T L K H 1 0 3 0 0 1 0 0 0 4 2 1 0 0 0 1 1 0 0 0 0 0 14 0 1553.9141 P50748 P50748 1544 1557 KNTC1 Kinetochore-associated protein 1 yes yes 2 1.2556E-09 110.08 By MS/MS 1 1.3145 1.1652 NaN 1 Median NaN NaN NaN 0 0 Median 1.3145 1.1652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6732800 2798900 3933800 0 0 0 6732800 2798900 3933800 0 0 0 0 0 0 0 0 0 0 0 0 16497 2420 17207 85688 86976;86977 86977 2 ITNLTQQLEQASIVK ELEGMRRSLKEQAIKITNLTQQLEQASIVK ITNLTQQLEQASIVKKRSEDDLRQQRDVLD K I T V K K 1 0 1 0 0 3 1 0 0 2 2 1 0 0 0 1 2 0 0 1 0 0 15 0 1684.9359 P15924 P15924 1612 1626 DSP Desmoplakin yes yes 2 1.7707E-26 197.07 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 2 0.79103 0.82551 32.671 9 Median 0.83261 0.81718 4.1417 2 0 Median NaN NaN NaN 0 0 Median 0.60863 0.66409 20.682 2 0 Median 0.99477 0.95265 NaN 1 0 Median 0.65951 0.68471 26.446 2 0 Median 1.6143 1.3796 19.902 2 0 Median 68004000 37876000 30128000 26263000 14109000 12153000 0 0 0 17014000 10522000 6492300 1665600 802890 862750 19390000 10967000 8423400 3671800 1475400 2196300 16498 2021 17208 85689;85690;85691;85692;85693;85694;85695;85696;85697 86978;86979;86980;86981;86982;86983;86984;86985;86986;86987;86988 86979 11 ITNNINVLIK ALKTEENKIKVVALKITNNINVLIKDLFHI VVALKITNNINVLIKDLFHIPPSYKSTVTL K I T I K D 0 0 3 0 0 0 0 0 0 3 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1140.6867 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 417 426 API5 Apoptosis inhibitor 5 yes no 2 0.00038123 114.28 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 2 2 3 1 1 1.2156 1.0624 7.8107 11 Median 1.1881 1.1377 15.573 2 0 Median 1.1439 0.97982 1.7558 2 0 Median 1.1142 1.0663 4.6808 2 0 Median 1.2903 1.106 4.7304 3 0 Median 1.2156 1.1571 NaN 1 0 Median 1.2855 1.0624 NaN 1 0 Median 205460000 93422000 112040000 11276000 5525600 5750700 4712000 2255500 2456500 153640000 69725000 83916000 28466000 12675000 15790000 5478400 2355500 3122900 1882900 884740 998190 16499 1103 17209 85698;85699;85700;85701;85702;85703;85704;85705;85706;85707;85708 86989;86990;86991;86992;86993;86994;86995;86996 86991 8 ITNQVIYLNPPIEECR PGGEPKIKNVVHELRITNQVIYLNPPIEEC TNQVIYLNPPIEECRYKLYQEMFAWKMVVL R I T C R Y 0 1 2 0 1 1 2 0 0 3 1 0 0 0 2 0 1 0 1 1 0 0 16 0 1957.9931 Q14204 Q14204 964 979 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 4.6751E-10 113.24 By matching By MS/MS 1 2 0.73166 0.79023 4.2003 3 Median NaN NaN NaN 0 0 Median 0.92885 0.79023 NaN 1 0 Median 0.71581 0.76716 5.4255 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17037000 9974300 7062300 0 0 0 1187800 535050 652710 15849000 9439200 6409600 0 0 0 0 0 0 0 0 0 16500 2865 17210 85709;85710;85711 86997;86998;86999;87000 86999 4 ITPAHDQNDYEVGQR FDEFVDMDFGTGAVKITPAHDQNDYEVGQR ITPAHDQNDYEVGQRHGLEAISIMDSRGAL K I T Q R H 1 1 1 2 0 2 1 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 15 0 1741.802 P26640;A0A140T936 P26640 592 606 VARS Valine--tRNA ligase yes no 2;3 1.0981E-09 106.35 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1429 0.96001 17.293 6 Median 0.91975 0.88894 NaN 1 0 Median 1.1758 0.98544 10.664 2 0 Median 1.2275 1.3503 NaN 1 0 Median 1.0783 0.91616 13.579 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44330000 20055000 24275000 6154100 3041300 3112800 21888000 9679100 12208000 4975300 2228900 2746400 11313000 5106100 6207400 0 0 0 0 0 0 16501 2148 17211 85712;85713;85714;85715;85716;85717 87001;87002;87003;87004;87005;87006;87007;87008;87009;87010;87011;87012 87008 12 ITPAMAAR ETDEPTASDSKGKSKITPAMAARIKQIKPL DSKGKSKITPAMAARIKQIKPLLSASSRLG K I T A R I 3 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 8 0 829.44801 Q7Z6Z7 Q7Z6Z7 1038 1045 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.022726 44.692 By MS/MS By MS/MS 1 2 0.90886 0.77656 11.727 3 Median 0.69265 0.69011 NaN 1 0 Median 0.96627 0.82315 8.2398 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5275300 2469700 2805600 870520 429310 441200 4404800 2040400 2364400 0 0 0 0 0 0 0 0 0 0 0 0 16502 3253 17212 85718;85719;85720 87013;87014;87015 87014 3 ITPDMTLQNMK VMRRDQVLKLCANHRITPDMTLQNMKGTER ANHRITPDMTLQNMKGTERVWLWTACDFAD R I T M K G 0 0 1 1 0 1 0 0 0 1 1 1 2 0 1 0 2 0 0 0 0 0 11 0 1290.6312 P49792 P49792 2386 2396 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 4.6313E-20 152.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 5 4 3 1 1 0.84145 0.86602 46.855 14 Median 1.997 2.0579 NaN 1 0 Median 1.2509 0.84025 30.029 5 1 Plateau 0.81195 0.87454 1.2234 3 2 Median 0.94637 0.88209 13.121 3 0 Median 0.74397 0.76933 NaN 1 0 Median 0.28018 0.23507 NaN 1 0 Median 52252000 24519000 27733000 5415700 1156300 4259400 13830000 6619300 7210800 21843000 10609000 11234000 5313000 2498400 2814600 4203600 2437500 1766100 1647000 1198300 448750 16503 2401 17213;17214 85721;85722;85723;85724;85725;85726;85727;85728;85729;85730;85731;85732;85733;85734;85735;85736 87016;87017;87018;87019;87020;87021;87022;87023;87024 87017 1113;1114 9 ITPELLTR ILVKMAKEGLLFEGRITPELLTRGKFNTSD GLLFEGRITPELLTRGKFNTSDVSAIEKNK R I T T R G 0 1 0 0 0 0 1 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 8 0 941.55458 P19367 P19367 324 331 HK1 Hexokinase-1 yes yes 2 0.0034335 96.492 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 2 1 1 1.1741 1.0007 23.413 10 Median 0.94503 0.91436 5.5202 2 0 Median 1.1842 1.0066 14.87 3 0 Median 0.93029 0.99407 NaN 1 0 Median 1.4441 1.2351 0.5228 2 0 Median 0.91578 0.94659 NaN 1 0 Median 2.2895 1.9369 NaN 1 0 Median 66678000 31691000 34987000 28474000 15121000 13352000 27365000 11638000 15727000 4609900 2298500 2311400 3253700 1169800 2083800 2804900 1418600 1386400 170930 44843 126090 16504 2064 17215 85737;85738;85739;85740;85741;85742;85743;85744;85745;85746 87025;87026;87027;87028;87029;87030;87031;87032;87033 87026 9 ITPENLPQILLQLK SARDLDELSRYPEDKITPENLPQILLQLKR KITPENLPQILLQLKRRRTEEGPTLSYGRD K I T L K R 0 0 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 14 0 1618.9658 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 133 146 MATR3 Matrin-3 yes no 2 7.4191E-07 121.6 By matching By matching By MS/MS By MS/MS 2 6 1 4 0.73632 0.75938 15.033 13 Median NaN NaN NaN 0 0 Median 0.8252 0.72303 17.283 2 0 Median 0.73617 0.7712 18.631 6 0 Median 0.99836 0.8973 NaN 1 0 Median 0.75817 0.73337 5.1349 4 0 Linear NaN NaN NaN 0 0 Median 87232000 46074000 41158000 0 0 0 2085800 1034900 1050900 3636800 2059500 1577200 49193000 24744000 24449000 32316000 18235000 14081000 0 0 0 16505 297 17216 85747;85748;85749;85750;85751;85752;85753;85754;85755;85756;85757;85758;85759 87034;87035;87036;87037;87038 87034 5 ITPENLPQILLQLKR SARDLDELSRYPEDKITPENLPQILLQLKR ITPENLPQILLQLKRRRTEEGPTLSYGRDG K I T K R R 0 1 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 15 1 1775.0669 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 133 147 MATR3 Matrin-3 yes no 3 0.00082454 37.013 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 3 3 0.79381 0.84733 10.52 11 Median 0.7894 0.8275 NaN 1 0 Median 0.97983 0.94405 NaN 1 0 Median 0.77582 0.84733 2.8174 3 0 Median NaN NaN NaN 0 0 Median 0.78483 0.86301 4.4298 3 0 Plateau 1.2358 1.0995 19.378 3 0 Plateau 23170000 12588000 10582000 190330 97907 92425 461250 236400 224850 6486500 3619300 2867200 0 0 0 8804300 4856700 3947600 7227700 3777400 3450300 16506 297 17217 85760;85761;85762;85763;85764;85765;85766;85767;85768;85769;85770 87039;87040;87041;87042;87043;87044;87045 87042 7 ITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR LVYADEESSNITDGRITPEPAVSNTEEPST ASNYPDVLTRPSLHRSHLNFSMLESPALHC R I T H R S 2 2 2 1 0 0 3 0 1 1 2 0 0 0 5 5 6 0 1 2 0 0 33 1 3566.7489 P49790 P49790 101 133 NUP153 Nuclear pore complex protein Nup153 yes yes 4 7.445E-09 54.324 By MS/MS 1 0.3819 0.48243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3819 0.48243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7368300 6034100 1334200 0 0 0 0 0 0 7368300 6034100 1334200 0 0 0 0 0 0 0 0 0 16507 2400 17218 85771 87046 87046 1 ITPFNLQEEMEEGHFDADGNYFLNR EGQEAATLPSEGGVRITPFNLQEEMEEGHF EEGHFDADGNYFLNRDAQIRDSWLDNIDWV R I T N R D 1 1 3 2 0 1 4 2 1 1 2 0 1 3 1 0 1 0 1 0 0 0 25 0 2985.3239 O95400 O95400 87 111 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 3 1.0537E-05 36.9 By matching By MS/MS By matching 1 1 1 0.77401 0.72627 5.4419 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69638 0.69885 NaN 1 0 Median 0.86029 0.75476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5313200 3252900 2060400 556100 223580 332520 0 0 0 4599100 2949700 1649400 158000 79594 78406 0 0 0 0 0 0 16508 1771 17219 85772;85773;85774 87047 87047 1 ITPHTLNFVKK YSVAFEKSGAVSDAKITPHTLNFVKKLVST SDAKITPHTLNFVKKLVSTFGVGLENVSNV K I T K K L 0 0 1 0 0 0 0 0 1 1 1 2 0 1 1 0 2 0 0 1 0 0 11 1 1296.7554 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3352 3362 TRRAP Transformation/transcription domain-associated protein yes no 3 0.053511 13.008 By MS/MS 1 0.87061 0.98973 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87061 0.98973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2805600 1428000 1377600 0 0 0 0 0 0 2805600 1428000 1377600 0 0 0 0 0 0 0 0 0 16509 991 17220 85775 87048;87049 87049 2 ITPLSLQTQGSSHETLNIVEEK ESTPEPRPNEWEKRRITPLSLQTQGSSHET TQGSSHETLNIVEEKKRAEVGKDERVITEE R I T E K K 0 0 1 0 0 2 3 1 1 2 3 1 0 0 1 3 3 0 0 1 0 0 22 0 2423.2544 O43491;Q6R5J7;E9PMV8 O43491 672 693 EPB41L2 Band 4.1-like protein 2 yes no 3 1.7586E-14 86.546 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.83722 0.80015 12.21 5 Median 0.85928 0.83131 NaN 1 0 Median 1.059 0.92934 NaN 1 0 Median 0.7506 0.80015 NaN 1 0 Median 0.83722 0.70334 NaN 1 0 Median 0.67426 0.69325 NaN 1 0 Median NaN NaN NaN 0 0 Median 37125000 20019000 17106000 11880000 6331800 5548400 1534200 717740 816420 20759000 11517000 9242200 1420000 668230 751740 1531700 784240 747430 0 0 0 16510 1573 17221 85776;85777;85778;85779;85780 87050;87051 87050 2 ITPSYVAFTPEGER KNGRVEIIANDQGNRITPSYVAFTPEGERL RITPSYVAFTPEGERLIGDAAKNQLTSNPE R I T E R L 1 1 0 0 0 0 2 1 0 1 0 0 0 1 2 1 2 0 1 1 0 0 14 0 1565.7726 P11021 P11021 61 74 HSPA5 78 kDa glucose-regulated protein yes yes 2 1.213E-08 120.06 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 1 0.88795 0.83577 17.925 9 Median 0.88095 0.84562 7.4528 4 0 Median 0.93064 0.80431 3.6656 2 0 Median 0.88795 0.89208 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46157 0.53362 NaN 1 0 Median 1.241 1.0093 NaN 1 0 Median 367680000 198240000 169440000 272710000 147720000 124990000 37593000 19017000 18576000 46111000 24053000 22057000 0 0 0 9067100 6424000 2643100 2194800 1023400 1171400 16511 1948 17222 85781;85782;85783;85784;85785;85786;85787;85788;85789 87052;87053;87054;87055;87056;87057;87058;87059;87060;87061;87062;87063;87064 87052 13 ITPYDVQLGYSVLSR FGSNSNPYMGTRLFRITPYDVQLGYSVLSR ITPYDVQLGYSVLSRGSCVPHPSRHPLLLL R I T S R G 0 1 0 1 0 1 0 1 0 1 2 0 0 0 1 2 1 0 2 2 0 0 15 0 1709.8988 Q9NU22 Q9NU22 2013 2027 MDN1 Midasin yes yes 2 0.00016642 76.522 By MS/MS By matching 2 1 0.9047 0.96235 3.3312 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86652 0.95743 4.6925 2 0 Median 1.1101 0.96235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3981400 1982900 1998600 0 0 0 0 0 0 3891400 1948500 1942800 90055 34346 55709 0 0 0 0 0 0 16512 4112 17223 85790;85791;85792 87065;87066 87065 2 ITQDIFQQLLK SFDIFGRTTTPQQTKITQDIFQQLLKRGFV QQTKITQDIFQQLLKRGFVLQDTVEQLRCE K I T L K R 0 0 0 1 0 3 0 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1345.7606 P56192;H0YHV5 P56192 365 375 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.0063757 44.349 By MS/MS By MS/MS By MS/MS 1 3 1 1.1561 1.0229 14.804 5 Median 1.1875 1.1531 NaN 1 0 Median 1.168 1.0229 13.498 3 0 Plateau 1.0396 1.125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59145000 27074000 32071000 7409900 3261300 4148600 49171000 22594000 26577000 2563700 1218500 1345100 0 0 0 0 0 0 0 0 0 16513 2508 17224 85793;85794;85795;85796;85797 87067;87068;87069 87068 3 ITQDIFQQLLKR SFDIFGRTTTPQQTKITQDIFQQLLKRGFV QTKITQDIFQQLLKRGFVLQDTVEQLRCEH K I T K R G 0 1 0 1 0 3 0 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 12 1 1501.8617 P56192;H0YHV5 P56192 365 376 MARS Methionine--tRNA ligase, cytoplasmic yes no 2;3 0.0012007 74.162 By MS/MS By matching By matching 4 1 1 1.2264 1.2752 21.675 6 Median 1.2264 1.2752 8.912 4 2 Median 1.1189 1.1239 NaN 1 0 Median 1.787 2.0469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15384000 6382300 9001200 14343000 5963400 8380000 607260 267960 339300 432850 150970 281880 0 0 0 0 0 0 0 0 0 16514 2508 17225 85798;85799;85800;85801;85802;85803 87070;87071;87072;87073 87070 4 ITQETFDAVLQEK RAAAAAGQNNMAARRITQETFDAVLQEKAK RRITQETFDAVLQEKAKRYHMDASGEAVSE R I T E K A 1 0 0 1 0 2 2 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 13 0 1520.7722 M0R2Z9;Q8IX01;M0R3F6;M0R065 M0R2Z9 20 32 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.011085 52.928 By MS/MS 1 1.8153 1.941 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8153 1.941 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8840700 3119200 5721500 0 0 0 0 0 0 8840700 3119200 5721500 0 0 0 0 0 0 0 0 0 16515 1437 17226 85804 87074 87074 1 ITQLVSDQANHVLAR RIKAMQETVDALRSRITQLVSDQANHVLAR ITQLVSDQANHVLARAGEGNEEISNMIHSY R I T A R A 2 1 1 1 0 2 0 0 1 1 2 0 0 0 0 1 1 0 0 2 0 0 15 0 1663.9006 A0A1B0GV47;Q7Z4S6;H0YIM7 A0A1B0GV47 444 458 KIF21A Kinesin-like protein KIF21A;Kinesin-like protein yes no 3 3.1208E-06 77.527 By MS/MS By MS/MS 1 1 1.3984 1.2063 4.4394 2 Median NaN NaN NaN 0 0 Median 1.3782 1.169 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4189 1.2448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4723900 2257600 2466300 0 0 0 3057300 1515300 1542000 0 0 0 1666600 742320 924280 0 0 0 0 0 0 16516 325 17227 85805;85806 87075;87076 87075 2 ITQSNAILR LDFPNLPYLIDGTHKITQSNAILRYIARKH IDGTHKITQSNAILRYIARKHNLCGESEKE K I T L R Y 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1014.5822 A0A0A0MTN3;P21266;A0A3B3IRM5;Q5T8R1;P46439;E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7 E9PHN7 70 78 GSTM3;GSTM5;GSTM2 Glutathione S-transferase Mu 3;Glutathione S-transferase Mu 5;Glutathione S-transferase Mu 2 no no 2 8.201E-16 182.13 By MS/MS By matching By MS/MS 2 1 1 1.0006 0.96654 6.8442 4 Median 0.96393 0.92847 1.7073 2 0 Median 1.2655 1.0701 NaN 1 0 Median 1.0369 0.99411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37147000 17592000 19555000 26550000 12655000 13895000 5217300 2341400 2875900 5379400 2595100 2784300 0 0 0 0 0 0 0 0 0 16517 935;197 17228 85807;85808;85809;85810 87077;87078;87079;87080;87081 87078 5 ITQYLIR WPRFIRHKCKQRFTKITQYLIRIRKLTLKR KCKQRFTKITQYLIRIRKLTLKRQRKLVPL K I T I R I 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 7 0 905.53345 Q9BXY0;H0YBV6 Q9BXY0 116 122 MAK16 Protein MAK16 homolog yes no 2 3.886E-13 144.29 By MS/MS 2 1.2535 1.2618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2535 1.2618 NaN 1 1 Median NaN NaN NaN 0 0 Median 22635000 10209000 12425000 0 0 0 0 0 0 0 0 0 0 0 0 22635000 10209000 12425000 0 0 0 16518 3883 17229 85811;85812 87082;87083 87082 2 ITREEGVLTLWR DQRRGYKNVFNALIRITREEGVLTLWRGCI LIRITREEGVLTLWRGCIPTMARAVVVNAA R I T W R G 0 2 0 0 0 0 2 1 0 1 2 0 0 0 0 0 2 1 0 1 0 0 12 1 1471.8147 I3L1P8;Q02978 I3L1P8 160 171 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 3 0.001689 41.401 By MS/MS By MS/MS By matching 2 2 1 0.96782 1.0419 17.361 5 Median 0.91816 0.99311 6.7852 2 0 Median 1.5109 1.3359 3.2803 2 0 Median 0.92452 0.95858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20507000 9915600 10592000 15297000 7795200 7502100 4484200 1828900 2655300 725690 291470 434220 0 0 0 0 0 0 0 0 0 16519 1277 17230 85813;85814;85815;85816;85817 87084;87085;87086 87085 3 ITRHEAELLSK EADLSMFDLIGLENKITRHEAELLSKKKIP LENKITRHEAELLSKKKIPRKLMEEISTSA K I T S K K 1 1 0 0 0 0 2 0 1 1 2 1 0 0 0 1 1 0 0 0 0 0 11 1 1295.7197 Q96L91 Q96L91 1422 1432 EP400 E1A-binding protein p400 yes yes 3 0.061648 14.876 By matching By MS/MS By matching 1 1 1 0.71031 0.66513 32.289 3 Median NaN NaN NaN 0 0 Median 0.71031 0.66513 NaN 1 0 Median 0.91402 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62045 0.56549 NaN 1 0 Median 2608400 1443100 1165300 0 0 0 1704200 962790 741370 673990 344370 329620 0 0 0 0 0 0 230250 135900 94347 16520 3700 17231 85818;85819;85820 87087 87087 1 ITSAPDMEDILTESEIKLDGVR DITVESKRTIFLLHRITSAPDMEDILTESE EDILTESEIKLDGVRQKIFQVAQELSGEDM R I T V R Q 1 1 0 3 0 0 3 1 0 3 2 1 1 0 1 2 2 0 0 1 0 0 22 1 2431.2152 Q99598;C4P0D6;C4P0D8;C4P0D4 Q99598 77 98 TSNAX;DISC1 Translin-associated protein X yes no 3 0.00025324 27.947 By matching By MS/MS 1 1 0.90757 0.85911 33.297 2 Median 0.68695 0.67889 NaN 1 0 Median 1.199 1.0872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3420700 1695100 1725600 1281400 674880 606480 2139400 1020200 1119200 0 0 0 0 0 0 0 0 0 0 0 0 16521 3756 17232 85821;85822 87088 87088 1 ITSAYLQDIENAYKK VQRRIQKKGDPHEMKITSAYLQDIENAYKK ITSAYLQDIENAYKKTFLPEMSEKCEVLQY K I T K K T 2 0 1 1 0 1 1 0 0 2 1 2 0 0 0 1 1 0 2 0 0 0 15 1 1755.9043 A0A087WXC5;E7ESZ7;O95299 A0A087WXC5 229 243 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 2 5.3168E-06 89.266 By MS/MS 1 1.4006 1.3058 NaN 1 Median 1.4006 1.3058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6083100 2679000 3404100 6083100 2679000 3404100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16522 66 17233 85823 87089 87089 1 ITSCIFQLLQEAGIK ARKNHLEGKAAISNKITSCIFQLLQEAGIK ITSCIFQLLQEAGIKTAFTRKCGETAFIAP K I T I K T 1 0 0 0 1 2 1 1 0 3 2 1 0 1 0 1 1 0 0 0 0 0 15 0 1719.9229 P22234;E9PBS1 P22234 60 74 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 9.5811E-10 119.76 By MS/MS 2 1.2799 1.0922 0.71819 2 Median NaN NaN NaN 0 0 Median 1.2799 1.0922 0.71819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14188000 6133200 8054400 0 0 0 14188000 6133200 8054400 0 0 0 0 0 0 0 0 0 0 0 0 16523 909 17234 85824;85825 87090;87091;87092 87092 3 ITSDFSSEEDR YRDILEHHLQNNKFRITSDFSSEEDRSSSC NKFRITSDFSSEEDRSSSCLQAKLTDLQVI R I T D R S 0 1 0 2 0 0 2 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 11 0 1284.547 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1137 1147 SYNE2 Nesprin-2 yes no 2 0.0007518 63.283 By matching By MS/MS 1 1 1.6316 1.4074 15.344 2 Median NaN NaN NaN 0 0 Median 1.476 1.2627 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8036 1.5687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4598100 1827300 2770800 0 0 0 3830300 1549100 2281200 0 0 0 767840 278240 489600 0 0 0 0 0 0 16524 3521 17235 85826;85827 87093 87093 1 ITSEAEDLVANFFPK VDQEVKLKVDSFRERITSEAEDLVANFFPK ITSEAEDLVANFFPKKLLELDSFLKEPILN R I T P K K 2 0 1 1 0 0 2 0 0 1 1 1 0 2 1 1 1 0 0 1 0 0 15 0 1679.8407 K9J957;P61289;A0A087WTV2;K7ENH2;B7Z8D3 K9J957 22 36 PSME3 Proteasome activator complex subunit 3 yes no 2 0.00032045 57.348 By MS/MS By matching By matching 4 1 1 1.0756 0.91626 15.025 6 Median NaN NaN NaN 0 0 Median 1.041 0.87942 7.3636 4 0 Median 1.267 1.2297 NaN 1 0 Median 1.1306 0.94081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7662200 3418000 4244300 0 0 0 6175800 2907500 3268300 1402600 473550 929040 83869 36919 46950 0 0 0 0 0 0 16525 1403 17236 85828;85829;85830;85831;85832;85833 87094;87095;87096 87094 3 ITSEAIGQLHR YRGHTNQDHVHAVWKITSEAIGQLHRSLES AVWKITSEAIGQLHRSLESCPGETVVAEDP K I T H R S 1 1 0 0 0 1 1 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1223.6622 Q9UNY4 Q9UNY4 538 548 TTF2 Transcription termination factor 2 yes yes 3 0.0013867 46.706 By MS/MS 1 1.1673 0.99431 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1673 0.99431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1801200 778010 1023200 0 0 0 0 0 0 0 0 0 1801200 778010 1023200 0 0 0 0 0 0 16526 4352 17237 85834 87097;87098 87098 2 ITSEALLVTQQLVK LVPPVVACVGDPFYKITSEALLVTQQLVKV KITSEALLVTQQLVKVIRPLDQPSSFDATP K I T V K V 1 0 0 0 0 2 1 0 0 1 3 1 0 0 0 1 2 0 0 2 0 0 14 0 1541.9029 Q86VP6;H0YH27 Q86VP6 535 548 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 6.6868E-06 93.096 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 1.2229 1.1488 34.789 13 Median 1.1612 1.1488 4.8425 3 0 Median 1.272 1.1058 5.4083 2 0 Median 1.0961 1.161 8.9041 3 0 Median 1.2526 1.0507 11.819 3 0 Median 2.6469 2.7186 0.87938 2 0 Median NaN NaN NaN 0 0 Median 49719000 23120000 26599000 17407000 8108200 9298300 3492700 1599100 1893700 23606000 11425000 12181000 2251200 1029700 1221400 2961800 957810 2004000 0 0 0 16527 3288 17238 85835;85836;85837;85838;85839;85840;85841;85842;85843;85844;85845;85846;85847 87099;87100;87101;87102;87103;87104;87105;87106;87107;87108;87109;87110 87099 12 ITSEIPQTER PEKTVDVAAEKKVVKITSEIPQTERMQKRA KKVVKITSEIPQTERMQKRAERFNVPVSLE K I T E R M 0 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 2 0 0 0 0 0 10 0 1172.6037 P82979;H0YHG0;F8VZQ9 P82979 93 102 SARNP SAP domain-containing ribonucleoprotein yes no 2 1.7503E-05 148.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 0.96123 0.84031 12.594 8 Median 0.81232 0.75867 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.9364 0.9038 16.875 2 1 Median 1.1687 0.97315 9.9863 2 0 Median 0.87068 0.87945 NaN 1 0 Median 0.96123 0.77938 4.2075 2 1 Median 238510000 118750000 119760000 8352100 4564600 3787500 0 0 0 60503000 32018000 28485000 134020000 63983000 70041000 27121000 14023000 13098000 8510900 4163500 4347400 16528 2661 17239 85848;85849;85850;85851;85852;85853;85854;85855 87111;87112;87113;87114;87115;87116;87117;87118;87119;87120;87121;87122;87123 87117 13 ITSELSEANALELLSK SAALQALGFCLYNPKITSELSEANALELLS TSELSEANALELLSKLNDTIKNSDKNVRTR K I T S K L 2 0 1 0 0 0 3 0 0 1 4 1 0 0 0 3 1 0 0 0 0 0 16 0 1716.9145 Q5UIP0;H7BZN3 Q5UIP0 88 103 RIF1 Telomere-associated protein RIF1 yes no 2 0.057275 21.251 By MS/MS 3 0.82913 0.90666 33.802 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82913 0.90666 33.802 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5103700 2695400 2408300 0 0 0 0 0 0 5103700 2695400 2408300 0 0 0 0 0 0 0 0 0 16529 3109 17240 85856;85857;85858 87124 87124 1 ITSEMGSASQANIR PYLEGILSQVIHLEKITSEMGSASQANIRL KITSEMGSASQANIRLTSLKKTLATTLAPR K I T I R L 2 1 1 0 0 1 1 1 0 2 0 0 1 0 0 3 1 0 0 0 0 0 14 0 1463.7038 Q9H583;Q5T3Q7 Q9H583 1792 1805 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 6.525E-08 138.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.1441 1.0979 11.236 6 Median NaN NaN NaN 0 0 Median 1.054 0.88793 NaN 1 0 Median 1.0513 1.1597 NaN 1 0 Median 1.2019 1.0543 NaN 1 1 Median 1.1114 1.1434 NaN 1 0 Median 1.2824 1.0537 13.406 2 0 Median 23739000 10754000 12986000 0 0 0 1017700 392650 625040 4742900 2345000 2397900 1600700 692270 908440 9834800 4499200 5335600 6543200 2824600 3718600 16530 3086 17241 85859;85860;85861;85862;85863;85864 87125;87126;87127;87128;87129;87130;87131;87132;87133;87134 87129 10 ITSENPDEGFKPSSGTVQELNFR SAHVPCPRGHVIAARITSENPDEGFKPSSG GFKPSSGTVQELNFRSNKNVWGYFSVAAAG R I T F R S 0 1 2 1 0 1 3 2 0 1 1 1 0 2 2 3 2 0 0 1 0 0 23 1 2551.2191 Q13085;O00763 Q13085 510 532 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 3 5.8876E-35 140.17 By MS/MS By matching 1 2 0.9332 0.87221 18.056 3 Median 0.65016 0.68398 NaN 1 0 Median 0.97926 0.92139 7.758 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43717000 24850000 18867000 35390000 20887000 14503000 8327100 3962600 4364600 0 0 0 0 0 0 0 0 0 0 0 0 16531 2784 17242 85865;85866;85867 87135 87135 1 ITSFPESEGYSYETSTK HTLGDPSYSYETTEKITSFPESEGYSYETS SFPESEGYSYETSTKTTRTPDTSTYCYETA K I T T K T 0 0 0 0 0 0 3 1 0 1 0 1 0 1 1 4 3 0 2 0 0 0 17 0 1924.8578 P46821 P46821 2014 2030 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 2.8131E-10 99.844 By MS/MS By MS/MS By MS/MS 1 1 1 1.0508 1.0415 9.836 3 Median 0.93005 0.92454 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0508 1.1238 NaN 1 0 Median 1.0879 1.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17066000 8672700 8392800 5062300 2703900 2358400 0 0 0 10366000 5164900 5201000 1637300 803890 833420 0 0 0 0 0 0 16532 2347 17243 85868;85869;85870 87136;87137;87138;87139;87140;87141;87142;87143;87144;87145;87146 87139 11 ITSGPFEPDLYK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM PMRITSGPFEPDLYKSEMEVQDAELKALLQ R I T Y K S 0 0 0 1 0 0 1 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 12 0 1365.6816 Q9UQ80 Q9UQ80 333 344 PA2G4 Proliferation-associated protein 2G4 yes yes 2 3.3934E-06 140.16 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 0.73352 0.71961 57.979 9 Median 0.66212 0.60918 NaN 1 0 Median 0.71511 0.60677 15.276 3 0 Median 0.74019 0.75779 1.1255 3 2 Median 0.34689 0.30644 126.93 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 352860000 197670000 155190000 37411000 22029000 15382000 16163000 8760000 7403200 151620000 85957000 65661000 147660000 80923000 66741000 0 0 0 0 0 0 16533 4360 17244 85871;85872;85873;85874;85875;85876;85877;85878;85879 87147;87148;87149;87150;87151;87152;87153;87154;87155;87156;87157;87158;87159;87160;87161;87162;87163;87164 87154 18 ITSGPFEPDLYKSEMEVQDAELK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM DLYKSEMEVQDAELKALLQSSASRKTQKKK R I T L K A 1 0 0 2 0 1 4 1 0 1 2 2 1 1 2 2 1 0 1 1 0 0 23 1 2625.252 Q9UQ80 Q9UQ80 333 355 PA2G4 Proliferation-associated protein 2G4 yes yes 3 3.5684E-09 69.548 By MS/MS By MS/MS 2 1 0.76503 0.79507 1.0479 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75729 0.79105 1.423 2 2 Median 0.83708 0.79507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36789000 19786000 17003000 0 0 0 0 0 0 23894000 13035000 10859000 12895000 6751000 6144000 0 0 0 0 0 0 16534 4360 17245 85880;85881;85882 87165;87166;87167;87168 87166 4 ITSLLAYR PTPKHECHVSKNANRITSLLAYRAYELTQY VSKNANRITSLLAYRAYELTQYYFYEYGFD R I T Y R A 1 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 0 8 0 935.54402 Q9UK61 Q9UK61 286 293 FAM208A Protein FAM208A yes yes 2 0.00093958 149.4 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3639 1.33 5.5806 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2147 1.3478 NaN 1 0 Median 1.5316 1.3836 NaN 1 0 Median 1.1706 1.2158 NaN 1 0 Median 1.5655 1.3124 NaN 1 0 Median 9350000 4480300 4869700 0 0 0 0 0 0 1853100 956340 896730 135910 54155 81758 6614800 3167600 3447200 746220 302180 444040 16535 4307 17246 85883;85884;85885;85886 87169;87170;87171 87169 3 ITSLTQLTDNLTVLK SINGVRCPFCSKITRITSLTQLTDNLTVLK ITSLTQLTDNLTVLKIIDTAGLSEAVGLLM R I T L K I 0 0 1 1 0 1 0 0 0 1 4 1 0 0 0 1 4 0 0 1 0 0 15 0 1658.9455 Q13049;Q5JVY0 Q13049 70 84 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes no 2 0.039531 24.291 By matching By MS/MS By matching 1 1 1 1.1626 1.0401 35.054 3 Median 1.0749 1.0401 NaN 1 0 Median 1.1626 1.0042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1712 1.8741 NaN 1 0 Median 3786400 1790700 1995800 1620100 801880 818230 2091400 970470 1120900 0 0 0 0 0 0 0 0 0 74906 18329 56577 16536 2782 17247 85887;85888;85889 87172 87172 1 ITSNAMINACR NEKIKQVNERATLFRITSNAMINACRDFLM TLFRITSNAMINACRDFLMLAQTHSKKWQK R I T C R D 2 1 2 0 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 11 0 1249.5907 P22059;A0A0A0MSB4;Q6ZN50;Q969R2 P22059 267 277 OSBP;OSBP2 Oxysterol-binding protein 1;Oxysterol-binding protein;Oxysterol-binding protein 2 yes no 2 0.0042489 69.954 By MS/MS 1 1.1893 1.0614 NaN 1 Median NaN NaN NaN 0 0 Median 1.1893 1.0614 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1103100 466470 636630 0 0 0 1103100 466470 636630 0 0 0 0 0 0 0 0 0 0 0 0 16537 2096 17248 85890 87173 87173 1 ITSPLMEPSSIEK GIQTSEGVCLAVEKRITSPLMEPSSIEKIV KRITSPLMEPSSIEKIVEIDAHIGCAMSGL R I T E K I 0 0 0 0 0 0 2 0 0 2 1 1 1 0 2 3 1 0 0 0 0 0 13 0 1430.7327 P28066 P28066 54 66 PSMA5 Proteasome subunit alpha type-5 yes yes 2 4.189E-07 108.9 By MS/MS By MS/MS By MS/MS By matching By matching 6 4 1 2 1 0.82498 0.7642 30.641 14 Median 0.79173 0.72661 36.988 6 0 Median 0.92814 0.79474 37.967 4 0 Median 0.81374 0.76294 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62434 0.63986 18.249 2 0 Median 0.90992 0.76546 NaN 1 0 Median 315790000 187260000 128530000 242170000 138010000 104150000 57582000 40451000 17131000 10250000 5284700 4965000 0 0 0 4595100 2839500 1755600 1193000 668310 524650 16538 2159 17249;17250 85891;85892;85893;85894;85895;85896;85897;85898;85899;85900;85901;85902;85903;85904 87174;87175;87176;87177;87178;87179;87180;87181;87182;87183;87184;87185 87176 914 12 ITSQIFIGPTYYQR LRGNEVLYNGFTGRKITSQIFIGPTYYQRL KITSQIFIGPTYYQRLKHMVDDKIHSRARG K I T Q R L 0 1 0 0 0 2 0 1 0 3 0 0 0 1 1 1 2 0 2 0 0 0 14 0 1685.8777 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 1030 1043 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0029892 48.004 By MS/MS By MS/MS 1 1 0.48149 0.50419 46.696 2 Median 0.36296 0.36241 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63873 0.70144 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4668700 3039600 1629100 1510100 1169300 340820 0 0 0 3158600 1870300 1288300 0 0 0 0 0 0 0 0 0 16539 671 17251 85905;85906 87186;87187 87186 2 ITSVAWSPHHDGR TITEPYRTLSGHTAKITSVAWSPHHDGRLV AKITSVAWSPHHDGRLVSASYDGTAQVWDA K I T G R L 1 1 0 1 0 0 0 1 2 1 0 0 0 0 1 2 1 1 0 1 0 0 13 0 1461.7113 Q8TEQ6 Q8TEQ6 642 654 GEMIN5 Gem-associated protein 5 yes yes 3 0.0020023 37.613 By MS/MS By MS/MS By matching 1 1 1 0.87687 0.76849 26.187 3 Median 1.1258 1.1313 NaN 1 0 Median 0.81396 0.68664 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87687 0.76849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2862000 1209400 1652600 1333600 431740 901860 994950 494200 500750 0 0 0 533440 283500 249940 0 0 0 0 0 0 16540 3478 17252 85907;85908;85909 87188;87189;87190 87190 3 ITSYFLNEGSQAR IWEDSASENQEGLRKITSYFLNEGSQARPR RKITSYFLNEGSQARPRSSHRYFLERGLES K I T A R P 1 1 1 0 0 1 1 1 0 1 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1484.726 O75792 O75792 268 280 RNASEH2A Ribonuclease H2 subunit A yes yes 2 4.4454E-07 108.47 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.98499 0.92074 35.608 5 Median 0.98499 0.92074 NaN 1 0 Median 0.8407 0.70839 NaN 1 0 Median 1.0184 1.0083 NaN 1 0 Median 1.1486 0.95918 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48563 0.42712 NaN 1 0 Median 18384000 9283700 9100200 9759300 4979500 4779700 1913700 1055200 858450 4820600 2283700 2536900 1642400 790480 851910 0 0 0 247910 174740 73174 16541 1695 17253 85910;85911;85912;85913;85914 87191;87192;87193 87191 2 ITSYFLNEGSQARPR IWEDSASENQEGLRKITSYFLNEGSQARPR ITSYFLNEGSQARPRSSHRYFLERGLESAT K I T P R S 1 2 1 0 0 1 1 1 0 1 1 0 0 1 1 2 1 0 1 0 0 0 15 1 1737.8798 O75792 O75792 268 282 RNASEH2A Ribonuclease H2 subunit A yes yes 2;3 3.1905E-09 107.83 By MS/MS By matching By MS/MS 2 1 1 0.7903 0.78671 18.311 4 Median 0.72129 0.77651 21.821 2 0 Median 0.74211 0.68308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0102 0.9427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42734000 21741000 20993000 37969000 19269000 18700000 1739000 918380 820590 0 0 0 3025600 1553900 1471700 0 0 0 0 0 0 16542 1695 17254 85915;85916;85917;85918 87194;87195;87196;87197;87198;87199 87197 6 ITTFKDLVIR IIVAELQKELQEQLKITTFKDLVIRDKELT QEQLKITTFKDLVIRDKELTGALIASLINC K I T I R D 0 1 0 1 0 0 0 0 0 2 1 1 0 1 0 0 2 0 0 1 0 0 10 1 1204.718 O75694 O75694 820 829 NUP155 Nuclear pore complex protein Nup155 yes yes 3 0.015661 41.399 By MS/MS 1 1.3559 1.5485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3559 1.5485 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1374800 583170 791640 0 0 0 0 0 0 1374800 583170 791640 0 0 0 0 0 0 0 0 0 16543 1692 17255 85919 87200 87200 1 ITTGAQDDLR MTLGGRVSEEIFFGRITTGAQDDLRKVTQS IFFGRITTGAQDDLRKVTQSAYAQIVQFGM R I T L R K 1 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1088.5462 Q9Y4W6 Q9Y4W6 642 651 AFG3L2 AFG3-like protein 2 yes yes 2 0.0049372 51.445 By MS/MS By MS/MS 1 1 1.0966 1.0567 48.602 2 Median NaN NaN NaN 0 0 Median 1.698 1.49 NaN 1 0 Median 0.70825 0.74935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3264700 1702900 1561800 0 0 0 1547800 770090 777720 1716900 932840 784060 0 0 0 0 0 0 0 0 0 16544 4449 17256 85920;85921 87201;87202 87202 2 ITTGAQDDLRK MTLGGRVSEEIFFGRITTGAQDDLRKVTQS FFGRITTGAQDDLRKVTQSAYAQIVQFGMN R I T R K V 1 1 0 2 0 1 0 1 0 1 1 1 0 0 0 0 2 0 0 0 0 0 11 1 1216.6412 Q9Y4W6 Q9Y4W6 642 652 AFG3L2 AFG3-like protein 2 yes yes 2;3 0.00063517 52.247 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1153 1.1477 15.205 6 Median 1.0255 1.0415 7.0585 2 0 Median 1.428 1.4327 1.5654 2 0 Median 1.0346 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1543 1.1967 NaN 1 0 Median NaN NaN NaN 0 0 Median 5605100 2358000 3247100 1118800 524620 594210 2012700 751340 1261300 1273800 515330 758480 0 0 0 1199800 566720 633090 0 0 0 16545 4449 17257 85922;85923;85924;85925;85926;85927 87203;87204;87205;87206;87207 87207 5 ITTHFELK IMGAPGSGKGTVSSRITTHFELKHLSSGDL KGTVSSRITTHFELKHLSSGDLLRDNMLRG R I T L K H 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 2 0 0 0 0 0 8 0 987.53893 Q9UIJ7 Q9UIJ7 27 34 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.011499 75.213 By MS/MS 1 0.85002 0.7927 NaN 1 Median 0.85002 0.7927 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14062000 7930700 6131500 14062000 7930700 6131500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16546 4291 17258 85928 87208 87208 1 ITTHYTIYPR PLCATRWSSTSTVPRITTHYTIYPRDKDKR STVPRITTHYTIYPRDKDKRWEGVNMERFA R I T P R D 0 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 3 0 2 0 0 0 10 0 1263.6612 Q16134 Q16134 42 51 ETFDH Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial yes yes 3 0.050185 25.437 By MS/MS 1 1.5307 1.3249 NaN 1 Median NaN NaN NaN 0 0 Median 1.5307 1.3249 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1093000 414820 678150 0 0 0 1093000 414820 678150 0 0 0 0 0 0 0 0 0 0 0 0 16547 2979 17259 85929 87209 87209 1 ITTIPMTSKPNVIVVQK GKIISSNIVSGTTTKITTIPMTSKPNVIVV TIPMTSKPNVIVVQKTTGKGTTIQGLPGKN K I T Q K T 0 0 1 0 0 1 0 0 0 3 0 2 1 0 2 1 3 0 0 3 0 0 17 1 1868.0805 E9PMC9;Q7Z589 E9PMC9 483 499 C11orf30;EMSY Protein EMSY yes no 3 0.0013513 45.723 By MS/MS 1 0.88242 1.0169 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88242 1.0169 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7628900 3842000 3786900 0 0 0 0 0 0 7628900 3842000 3786900 0 0 0 0 0 0 0 0 0 16548 966 17260 85930 87210 87210 1 ITTMQLER RIKDMDLWEQQEEERITTMQLEREKALEHK EQQEEERITTMQLEREKALEHKNRMSRMLE R I T E R E 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 2 0 0 0 0 0 8 0 990.51682 Q14152 Q14152 733 740 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0026718 126.28 By MS/MS By MS/MS 3 3 1.1676 1.0063 21.786 6 Median 1.3555 1.2722 34.045 3 0 Plateau 1.2038 1.0078 3.1736 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62351000 27671000 34680000 18673000 8363100 10310000 43679000 19308000 24370000 0 0 0 0 0 0 0 0 0 0 0 0 16549 2860 17261;17262 85931;85932;85933;85934;85935;85936 87211;87212;87213;87214 87213 1541 4 ITTQLDQVTAK TAQNALQDKQQELNKITTQLDQVTAKLQDK ELNKITTQLDQVTAKLQDKQEHCSQLESHL K I T A K L 1 0 0 1 0 2 0 0 0 1 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1216.6663 Q15075 Q15075 686 696 EEA1 Early endosome antigen 1 yes yes 2 0.00018648 110.14 By MS/MS By MS/MS 1 2 1.1343 1.0969 20.826 3 Plateau 1.1343 1.0969 NaN 1 0 Median 0.98956 0.86252 21.962 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18594000 8961200 9633100 11491000 6007300 5483500 7103600 2953900 4149600 0 0 0 0 0 0 0 0 0 0 0 0 16550 2926 17263 85937;85938;85939 87215;87216;87217 87215 3 ITTTFGEHLNAVQASAEHQK LRFAFRASLKTAIYRITTTFGEHLNAVQAS GEHLNAVQASAEHQKRLQQFLEFKE_____ R I T Q K R 3 0 1 0 0 2 2 1 2 1 1 1 0 1 0 1 3 0 0 1 0 0 20 0 2181.0814 Q9BTX1 Q9BTX1 645 664 NDC1 Nucleoporin NDC1 yes yes 3;4 2.9955E-14 104.03 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 4 1.0485 1.0516 17.531 12 Median 0.88374 0.88503 18.904 2 1 Median 1.1043 0.97655 25.142 2 0 Median 1.0581 1.1267 8.4623 4 0 Median 1.1588 1.0861 21.192 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161820000 74320000 87500000 21608000 9866800 11741000 24004000 11282000 12721000 107840000 49623000 58216000 8370500 3548100 4822500 0 0 0 0 0 0 16551 3831 17264 85940;85941;85942;85943;85944;85945;85946;85947;85948;85949;85950;85951 87218;87219;87220;87221;87222;87223;87224;87225;87226;87227 87222 10 ITTTFGEHLNAVQASAEHQKR LRFAFRASLKTAIYRITTTFGEHLNAVQAS EHLNAVQASAEHQKRLQQFLEFKE______ R I T K R L 3 1 1 0 0 2 2 1 2 1 1 1 0 1 0 1 3 0 0 1 0 0 21 1 2337.1826 Q9BTX1 Q9BTX1 645 665 NDC1 Nucleoporin NDC1 yes yes 4 0.0061471 30.21 By MS/MS 1 0.98322 1.1374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98322 1.1374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490200 1378400 2111800 0 0 0 0 0 0 3490200 1378400 2111800 0 0 0 0 0 0 0 0 0 16552 3831 17265 85952 87228 87228 1 ITVEYLQHIVEQK KSVVHCSKIWSCRKRITVEYLQHIVEQKNG KRITVEYLQHIVEQKNGKERVPILWHFLQK R I T Q K N 0 0 0 0 0 2 2 0 1 2 1 1 0 0 0 0 1 0 1 2 0 0 13 0 1598.8668 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4796 4808 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.048733 25.238 By MS/MS 1 1.1958 1.1855 NaN 1 Median 1.1958 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2776800 1271200 1505600 2776800 1271200 1505600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16553 189 17266 85953 87229 87229 1 ITVHFINR SLSVSARARSSSEDKITVHFINRDGETLTT RSSSEDKITVHFINRDGETLTTKGKVGDSL K I T N R D 0 1 1 0 0 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 8 0 998.56615 P10109 P10109 67 74 FDX1 Adrenodoxin, mitochondrial yes yes 2 0.011851 56.122 By MS/MS 1 1.8499 1.5691 NaN 1 Median NaN NaN NaN 0 0 Median 1.8499 1.5691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5187400 1753700 3433700 0 0 0 5187400 1753700 3433700 0 0 0 0 0 0 0 0 0 0 0 0 16554 1933 17267 85954 87230 87230 1 ITVLEALR EARLGKPSLVRETSRITVLEALRHPIQVSR LVRETSRITVLEALRHPIQVSRRLLSRPQD R I T L R H 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 277 284 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.004801 79.469 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 2 1 1.4387 1.308 32.672 8 Median 1.1557 1.0936 NaN 1 0 Median 1.4387 1.2617 3.4438 2 0 Median 1.5892 1.6245 23.491 2 0 Median NaN NaN NaN 0 0 Median 0.95909 0.98972 65.05 2 2 Median 1.4965 1.3234 NaN 1 0 Median 52980000 22072000 30908000 17527000 7874000 9653400 8245600 3242800 5002800 17909000 6726100 11182000 0 0 0 9192100 4185000 5007000 106280 43692 62583 16555 1140;4133;3098 17268 85955;85956;85957;85958;85959;85960;85961;85962 87231;87232;87233;87234;87235;87236;87237 87234 7 ITVNEVELLVMK NHRQLTFEEIAKSAKITVNEVELLVMKALS SAKITVNEVELLVMKALSVGLVKGSIDEVD K I T M K A 0 0 1 0 0 0 2 0 0 1 2 1 1 0 0 0 1 0 0 3 0 0 12 0 1386.7792 Q9UNM6;A0A087WUL9 Q9UNM6 302 313 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 3.2326E-06 125.48 By MS/MS By matching By matching 2 1 1 1.3572 1.233 18.211 4 Median NaN NaN NaN 0 0 Median 1.3031 1.1081 4.7793 2 0 Median 1.3646 1.3263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9352 1.6163 NaN 1 0 Median 33323000 14376000 18947000 0 0 0 32441000 14088000 18353000 244560 76895 167660 0 0 0 0 0 0 637550 211480 426070 16556 4345 17269 85963;85964;85965;85966 87238;87239 87238 2 ITVPGNFQGHSGAQCITCSYK YEMVSRVMKALVNRKITVPGNFQGHSGAQC FQGHSGAQCITCSYKASSGLLYPLERGFIY K I T Y K A 1 0 1 0 2 2 0 3 1 2 0 1 0 1 1 2 2 0 1 1 0 0 21 0 2324.0678 Q08945 Q08945 326 346 SSRP1 FACT complex subunit SSRP1 yes yes 3 7.3261E-08 50.425 By MS/MS 2 1.2042 1.1918 5.6146 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2042 1.1918 5.6146 2 0 Median NaN NaN NaN 0 0 Median 11680000 5568500 6111800 0 0 0 0 0 0 0 0 0 0 0 0 11680000 5568500 6111800 0 0 0 16557 2743 17270 85967;85968 87240;87241;87242 87240 3 ITVPLSVISQPMK TTVVSTSQAGKLPTRITVPLSVISQPMKGK TRITVPLSVISQPMKGKSVVTAPIIKGNLG R I T M K G 0 0 0 0 0 1 0 0 0 2 1 1 1 0 2 2 1 0 0 2 0 0 13 0 1411.8109 Q6P4R8 Q6P4R8 1184 1196 NFRKB Nuclear factor related to kappa-B-binding protein yes yes 2 0.0014995 52.79 By MS/MS 1 0.76215 0.82203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76215 0.82203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2151500 1170400 981170 0 0 0 0 0 0 2151500 1170400 981170 0 0 0 0 0 0 0 0 0 16558 3159 17271 85969 87243 87243 1 ITVTLLHETGSHIR PCMGTFLLHQGIQRRITVTLLHETGSHIRW RITVTLLHETGSHIRWKEVRELVVGRIRNT R I T I R W 0 1 0 0 0 0 1 1 2 2 2 0 0 0 0 1 3 0 0 1 0 0 14 0 1575.8733 A0A3B3ITK3;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;A0A3B3ITW6;Q12756;H7C3Y8 A0A3B3ITK3 923 936 KIF1A Kinesin-like protein KIF1A yes no 3 0.055498 27.335 By matching By MS/MS 1 1 1.6678 1.527 10.253 2 Median 1.4305 1.4202 NaN 1 0 Median 1.9445 1.6418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4933200 1835600 3097700 2540000 1151600 1388400 2393300 683970 1709300 0 0 0 0 0 0 0 0 0 0 0 0 16559 431 17272 85970;85971 87244 87244 0 ITVTSEVPFSK NLGGGVVTIERSKSKITVTSEVPFSKRYLK SKSKITVTSEVPFSKRYLKYLTKKYLKKNN K I T S K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 1 2 2 0 0 2 0 0 11 0 1206.6496 K7EMH1;K7ERI7;P35268;K7ELC4;K7EP65;K7EKS7;K7EJT5 K7EMH1 37 47 RPL22 60S ribosomal protein L22 yes no 2 0.00013559 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 3 1 1.0175 0.88507 15.011 11 Median 0.96552 0.88865 4.7414 2 0 Median 1.0218 0.84813 1.3941 3 0 Median 1.0076 0.94258 NaN 1 0 Median 1.1173 0.88507 NaN 1 0 Median 1.0411 1.1273 13.214 3 0 Median 1.0049 0.80299 NaN 1 0 Median 874360000 429060000 445300000 360390000 179520000 180870000 163930000 79174000 84758000 216640000 107590000 109050000 79898000 37491000 42407000 26457000 12817000 13640000 27047000 12474000 14574000 16560 1382 17273 85972;85973;85974;85975;85976;85977;85978;85979;85980;85981;85982 87245;87246;87247;87248;87249;87250;87251;87252;87253;87254;87255;87256;87257;87258;87259;87260;87261;87262;87263;87264;87265;87266;87267;87268;87269 87256 25 ITVTSEVPFSKR NLGGGVVTIERSKSKITVTSEVPFSKRYLK KSKITVTSEVPFSKRYLKYLTKKYLKKNNL K I T K R Y 0 1 0 0 0 0 1 0 0 1 0 1 0 1 1 2 2 0 0 2 0 0 12 1 1362.7507 K7EMH1;K7ERI7;P35268;K7ELC4;K7EP65;K7EKS7 K7EMH1 37 48 RPL22 60S ribosomal protein L22 yes no 2;3 1.4658E-93 229.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 2 1.1641 1.0496 24.638 14 Median 1.0824 1.0565 22.183 4 0 Median 1.2983 1.1462 6.4469 4 1 Linear 1.1236 1.1593 1.2138 2 0 Median 1.1421 0.92878 9.3216 2 0 Median 1.5483 1.7851 27.956 2 0 Median NaN NaN NaN 0 0 Median 614320000 298940000 315380000 320810000 162550000 158260000 193730000 90459000 103270000 87987000 40958000 47028000 6566300 2958300 3608000 5228900 2015800 3213200 0 0 0 16561 1382 17274 85983;85984;85985;85986;85987;85988;85989;85990;85991;85992;85993;85994;85995;85996 87270;87271;87272;87273;87274;87275;87276;87277;87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289 87286 18 ITWLYDNTTGK NFDMPFIFAEVNADRITWLYDNTTGKQWKN NADRITWLYDNTTGKQWKNSVNSHTIGRYI R I T G K Q 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 3 1 1 0 0 0 11 0 1310.6507 A0A494C0J7;Q08188 A0A494C0J7 417 427 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 2 0.050579 26.384 By MS/MS 1 1.0739 0.92225 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0739 0.92225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3445400 1740900 1704500 0 0 0 0 0 0 0 0 0 3445400 1740900 1704500 0 0 0 0 0 0 16562 459 17275 85997 87290 87290 1 ITWNTWK LILSYHPPIFRPMKRITWNTWKERLVIRAL PIFRPMKRITWNTWKERLVIRALENRVGIY R I T W K E 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 2 2 0 0 0 0 7 0 947.4865 Q9GZT8;E7EXA3;Q6X734;C9JN42;B8ZZI0 Q9GZT8 103 109 NIF3L1 NIF3-like protein 1 yes no 2 0.038702 45.718 By MS/MS 1 1.1149 1.0411 NaN 1 Median 1.1149 1.0411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4015900 1685600 2330300 4015900 1685600 2330300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16563 3916 17276 85998 87291;87292 87292 2 ITWSIIR MARRAVETTAQSDNKITWSIIREHMGDILY TTAQSDNKITWSIIREHMGDILYKLSSMKF K I T I R E 0 1 0 0 0 0 0 0 0 3 0 0 0 0 0 1 1 1 0 0 0 0 7 0 887.52289 P38606 P38606 565 571 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.0096554 83.614 By MS/MS By matching By matching 1 1 1 1.4265 1.2379 8.4733 3 Median 1.2884 1.2379 NaN 1 0 Median 1.4265 1.2363 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6448 1.4326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11581000 5065200 6516300 7114800 3277100 3837700 4356400 1746900 2609500 0 0 0 110260 41202 69057 0 0 0 0 0 0 16564 2276 17277 85999;86000;86001 87293;87294 87293 2 ITWSNPPAQGAR ESILQVLSQMEKIVRITWSNPPAQGARIVA IVRITWSNPPAQGARIVASTLSNPELFEEW R I T A R I 2 1 1 0 0 1 0 1 0 1 0 0 0 0 2 1 1 1 0 0 0 0 12 0 1296.6575 P17174 P17174 294 305 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 5.0111E-06 101.11 By MS/MS 2 0.56831 0.57087 35.367 2 Median 0.56831 0.57087 35.367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26152000 14862000 11289000 26152000 14862000 11289000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16565 2038 17278 86002;86003 87295;87296 87296 2 IVAALNAR SETGFLTYLDVSVGKIVAALNARAGRLDVM LDVSVGKIVAALNARAGRLDVMSQNPYNAV K I V A R A 3 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 826.50249 O15213;H0Y6G3 O15213 309 316 WDR46 WD repeat-containing protein 46 no no 2 0.048399 52.683 By MS/MS 1 2.1153 1.7387 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1153 1.7387 NaN 1 1 Median 670620 224550 446070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 670620 224550 446070 16566 1531 17279 86004 87297 87297 1 IVADFSASVK PYICKDFPETNNILKIVADFSASVKKPHTL NNILKIVADFSASVKKPHTLLQRVKACTTE K I V V K K 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 2 0 0 10 0 1035.5601 P49915 P49915 468 477 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.00035174 83.948 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 1 1 1.1067 1.0106 12.238 10 Median 1.0706 0.97744 10.42 4 2 Median 1.2263 1.0511 5.1018 2 0 Median 1.093 1.0835 NaN 1 0 Median 1.1627 1.0073 NaN 1 0 Median 0.92152 0.94836 NaN 1 0 Median 0.819 0.74222 NaN 1 0 Median 98700000 46016000 52684000 44423000 21336000 23088000 11105000 4845000 6260400 34237000 15327000 18910000 4775800 2352000 2423800 3539000 1893200 1645800 619610 262760 356850 16567 2405 17280 86005;86006;86007;86008;86009;86010;86011;86012;86013;86014 87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310;87311;87312 87299 15 IVADKDYSVTANSK MMDLQHGSLFLQTPKIVADKDYSVTANSKI KIVADKDYSVTANSKIVVVTAGVRQQEGES K I V S K I 2 0 1 2 0 0 0 0 0 1 0 2 0 0 0 2 1 0 1 2 0 0 14 1 1509.7675 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 78 91 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2;3 2.4071E-32 215.72 By MS/MS By MS/MS By MS/MS By MS/MS 15 9 3 2 1.1338 1.0776 70.841 29 Median 1.1243 1.0838 15.936 15 0 Median 1.2272 1.0639 26.948 9 2 Median 0.69031 0.71089 202.06 3 0 Median 1.2232 1.074 2.7044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1175400000 534010000 641350000 766750000 347010000 419740000 358050000 158470000 199580000 16194000 12921000 3272600 34368000 15605000 18764000 0 0 0 0 0 0 16568 1880 17281 86015;86016;86017;86018;86019;86020;86021;86022;86023;86024;86025;86026;86027;86028;86029;86030;86031;86032;86033;86034;86035;86036;86037;86038;86039;86040;86041;86042;86043 87313;87314;87315;87316;87317;87318;87319;87320;87321;87322;87323;87324;87325;87326;87327;87328;87329;87330;87331;87332;87333;87334;87335;87336;87337;87338;87339;87340;87341;87342;87343;87344;87345;87346;87347;87348;87349;87350 87336 38 IVAEAIAR NRRLEHQKKQEKANRIVAEAIARARARGEQ KQEKANRIVAEAIARARARGEQNIPRVLNE R I V A R A 3 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 841.50215 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4 Q9HCK8 464 471 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 0.061313 47.849 By MS/MS 1 0.67043 0.74408 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67043 0.74408 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759600 1069200 690330 0 0 0 0 0 0 1759600 1069200 690330 0 0 0 0 0 0 0 0 0 16569 4030 17282 86044 87351 87351 1 IVAEEFLK KEISEMKLSVNARARIVAEEFLKNVSRSSG SVNARARIVAEEFLKNVSRSSGEDPPRRLT R I V L K N 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 947.53278 F8WCF6;P59998;H7C0A3;R4GN08 F8WCF6 159 166 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2 0.0029868 102.72 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2607 1.1123 3.0889 4 Median 1.1623 1.0879 NaN 1 0 Median 1.3675 1.1626 NaN 1 0 Median 1.1662 1.0941 NaN 1 0 Median 1.3628 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 271140000 118540000 152590000 120130000 53218000 66909000 86412000 36524000 49888000 53885000 24363000 29522000 10713000 4437000 6276100 0 0 0 0 0 0 16570 1096 17283 86045;86046;86047;86048 87352;87353;87354;87355;87356;87357;87358 87353 7 IVAERPGTNSTGPAPMAPPR WDLNAWTKSAEAFGKIVAERPGTNSTGPAP PGTNSTGPAPMAPPRAPGPLSKQGSGSSQP K I V P R A 3 2 1 0 0 0 1 2 0 1 0 0 1 0 5 1 2 0 0 1 0 0 20 1 2018.0367 Q13263;M0R0K9 Q13263 408 427 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 8.1026E-20 121.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 6 6 6 4 0.44825 0.48672 17.409 33 Median 0.3898 0.42855 15.613 5 1 Median 0.51572 0.50121 15.71 7 2 Median 0.41306 0.47272 8.3037 6 1 Median 0.5569 0.5074 7.5794 6 1 Median 0.39407 0.42816 6.5925 5 0 Median 0.57054 0.51006 34.051 4 0 Median 738210000 494200000 244010000 173190000 117560000 55621000 120570000 77235000 43331000 221950000 153310000 68633000 92846000 56925000 35921000 115820000 79690000 36126000 13848000 9469500 4378300 16571 2802 17284;17285 86049;86050;86051;86052;86053;86054;86055;86056;86057;86058;86059;86060;86061;86062;86063;86064;86065;86066;86067;86068;86069;86070;86071;86072;86073;86074;86075;86076;86077;86078;86079;86080;86081;86082 87359;87360;87361;87362;87363;87364;87365;87366;87367;87368;87369;87370;87371;87372;87373;87374;87375;87376;87377;87378;87379;87380;87381;87382;87383;87384;87385;87386;87387;87388;87389;87390;87391;87392;87393;87394;87395;87396;87397;87398;87399;87400;87401;87402;87403;87404;87405;87406 87375 1499 47 IVAETMNNYLFGER KGYAFVEFESEDVAKIVAETMNNYLFGERL KIVAETMNNYLFGERLLECHFMPPEKVHKE K I V E R L 1 1 2 0 0 0 2 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 14 0 1655.7977 Q9BYG3;C9J6C5 Q9BYG3 101 114 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 2.255E-07 112.15 By MS/MS By matching 5 1 1.3635 1.2118 66.551 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0648 1.0648 74.322 5 2 Median 1.7505 1.3792 NaN 1 0 Median 99985000 38986000 60999000 0 0 0 0 0 0 0 0 0 0 0 0 99849000 38944000 60905000 135390 41668 93723 16572 3891 17286;17287 86083;86084;86085;86086;86087;86088 87407;87408;87409;87410;87411;87412;87413 87407 1845 7 IVAFENAFER LLLQALTRSNGAIQKIVAFENAFERLLDII GAIQKIVAFENAFERLLDIISEEGNSDGGI K I V E R L 2 1 1 0 0 0 2 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 10 0 1194.6033 O60763 O60763 203 212 USO1 General vesicular transport factor p115 yes yes 2 0.00041009 76.465 By MS/MS By MS/MS By matching 1 1 1 0.97068 0.9347 26.737 3 Median 0.97068 0.9347 NaN 1 0 Median 1.3054 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73983 0.6522 NaN 1 0 Median 21339000 10038000 11302000 15374000 7506400 7867200 5667800 2375700 3292100 0 0 0 0 0 0 0 0 0 297650 155420 142230 16573 1630 17288 86089;86090;86091 87414;87415;87416 87414 3 IVAHAVEVPAVQSPR TPSAAAVRKPIVLKRIVAHAVEVPAVQSPR IVAHAVEVPAVQSPRRSPRISFFLEKENEP R I V P R R 3 1 0 0 0 1 1 0 1 1 0 0 0 0 2 1 0 0 0 4 0 0 15 0 1571.8784 Q96FF9;B5MBX0;H0YCL8 Q96FF9 63 77 CDCA5 Sororin yes no 3 4.17E-05 67.234 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 0.79054 0.70543 8.9298 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79855 0.78335 2.9591 2 2 Median 0.82823 0.69316 NaN 1 0 Median 0.66906 0.66844 10.098 2 0 Median 0.79881 0.68184 NaN 1 0 Median 34398000 19686000 14712000 0 0 0 0 0 0 16214000 9868800 6344700 1181300 702030 479250 15866000 8502700 7363200 1137700 612530 525190 16574 616 17289 86092;86093;86094;86095;86096;86097 87417;87418;87419;87420;87421;87422;87423 87417 6 IVAIAVGDSAAK SRRLQEFLRFQDPGRIVAIAVGDSAAKSLL PGRIVAIAVGDSAAKSLLQGTIQMIQERLG R I V A K S 4 0 0 1 0 0 0 1 0 2 0 1 0 0 0 1 0 0 0 2 0 0 12 0 1113.6394 F5H6B2;Q9UHN6 F5H6B2 309 320 TMEM2 Transmembrane protein 2 yes no 2 0.00090694 70.1 By MS/MS By MS/MS By matching By matching By matching 1 2 1 2 1 1.1611 1.0106 24.94 7 Median 1.7667 1.6797 NaN 1 0 Median 1.3741 1.3006 11.115 2 1 Median 0.94741 1.0106 NaN 1 0 Median 1.0436 0.8863 13.373 2 0 Median NaN NaN NaN 0 0 Median 1.1611 0.99517 NaN 1 0 Median 28515000 13809000 14707000 2575000 882950 1692100 4904200 2177400 2726800 17587000 9124300 8462200 2309300 1091600 1217700 0 0 0 1140300 532410 607910 16575 1041 17290 86098;86099;86100;86101;86102;86103;86104 87424;87425;87426 87425 3 IVAISEDYPR DFESRYVQNGTYTVKIVAISEDYPRKTITG TYTVKIVAISEDYPRKTITGTVLINVEDIN K I V P R K 1 1 0 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 10 0 1161.603 Q14126 Q14126 469 478 DSG2 Desmoglein-2 yes yes 2 0.00036244 88.37 By matching By matching By matching By MS/MS By matching 1 2 2 4 1 0.90675 0.92823 35.732 10 Median 0.92562 0.8897 NaN 1 0 Median 0.66112 0.57864 72.761 2 0 Median 0.8769 0.93938 5.7039 2 0 Median NaN NaN NaN 0 0 Median 0.83822 0.88227 28.054 4 1 Median 1.2621 1.1126 NaN 1 0 Median 96807000 51450000 45357000 4611900 2185000 2426800 4069300 2060600 2008700 16281000 7960000 8320700 0 0 0 71508000 39073000 32436000 336520 171490 165030 16576 2855 17291 86105;86106;86107;86108;86109;86110;86111;86112;86113;86114 87427;87428;87429 87428 3 IVALDLR WAVFTAAIISRVQCRIVALDLRSHGETKVK IISRVQCRIVALDLRSHGETKVKNPEDLSA R I V L R S 1 1 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 798.49634 Q9Y570 Q9Y570 107 113 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.0080733 86.866 By MS/MS 3 1.3711 1.365 8.3882 3 Median 1.3711 1.365 8.3882 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22251000 8921400 13330000 22251000 8921400 13330000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16577 4453 17292 86115;86116;86117 87430 87430 1 IVALNAHTFLR VDVIFADVAQPDQTRIVALNAHTFLRNGGH DQTRIVALNAHTFLRNGGHFVISIKANCID R I V L R N 2 1 1 0 0 0 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 11 0 1253.7244 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;A6NHQ2 P22087 245 255 FBL;FBLL1 rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 no no 2;3 4.3571E-08 135.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 7 3 1.2589 1.2054 15.771 21 Median 1.2136 1.1831 8.3277 2 0 Median NaN NaN NaN 0 0 Median 1.3096 1.2782 8.9515 4 0 Median 1.6296 1.4092 15.086 5 0 Median 1.1364 1.1261 8.8465 7 1 Median 1.2841 1.0266 30.646 3 0 Median 477880000 216770000 261100000 7423500 3666600 3756900 0 0 0 95881000 39183000 56698000 8380700 2860100 5520600 336870000 159490000 177390000 29318000 11578000 17740000 16578 2097;517 17293 86118;86119;86120;86121;86122;86123;86124;86125;86126;86127;86128;86129;86130;86131;86132;86133;86134;86135;86136;86137;86138 87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441;87442;87443;87444;87445;87446;87447;87448;87449;87450;87451;87452;87453;87454;87455;87456 87446 26 IVALSSSLSNAK SRMRYISSQIERPIRIVALSSSLSNAKDVA PIRIVALSSSLSNAKDVAHWLGCSATSTFN R I V A K D 2 0 1 0 0 0 0 0 0 1 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1188.6714 O75643 O75643 1487 1498 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 3.1802E-06 145.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1.1096 1.0349 10.807 8 Median 0.98353 0.94786 NaN 1 0 Median 1.2449 1.1024 NaN 1 0 Median 0.82925 0.89891 18.498 2 0 Median 1.211 1.0829 NaN 1 0 Median 1.0167 1.0655 NaN 1 0 Median 1.2272 1.0306 2.001 2 1 Median 194090000 92917000 101180000 17409000 8826700 8582600 18880000 8408100 10472000 87245000 44185000 43060000 25915000 11180000 14735000 30661000 14385000 16277000 13984000 5932400 8051400 16579 1688 17294 86139;86140;86141;86142;86143;86144;86145;86146 87457;87458;87459;87460;87461;87462;87463;87464;87465;87466;87467;87468;87469 87462 12 IVAPGKGILAADESTGSIAK LTPEQKKELSDIAHRIVAPGKGILAADEST KGILAADESTGSIAKRLQSIGTENTEENRR R I V A K R 4 0 0 1 0 0 1 3 0 3 1 2 0 0 1 2 1 0 0 1 0 0 20 1 1897.052 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8 J3KPS3 23 42 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 3 0.02524 14.77 By MS/MS By matching 1 1 1.0302 0.9488 10.373 2 Median 1.0957 1.021 NaN 1 0 Median 0.96867 0.8817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7291000 3446600 3844400 6741000 3186100 3554900 550050 260520 289530 0 0 0 0 0 0 0 0 0 0 0 0 16580 1310 17295 86147;86148 87470 87470 1 IVAPISDSPKPPPQR CSLFPDHPLLQEREKIVAPISDSPKPPPQR IVAPISDSPKPPPQRVTLTLPVLNAARTVI K I V Q R V 1 1 0 1 0 1 0 0 0 2 0 1 0 0 5 2 0 0 0 1 0 0 15 1 1600.8937 O95336;M0R261 O95336 171 185 PGLS 6-phosphogluconolactonase yes no 3 1.4657E-10 111.12 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.49448 0.48433 36.63 4 Median 0.41677 0.43367 NaN 1 1 Median 0.56822 0.52344 NaN 1 0 Median 0.43031 0.44814 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90333 0.95328 NaN 1 0 Median NaN NaN NaN 0 0 Median 63279000 41475000 21804000 37415000 25346000 12069000 15995000 9905800 6089500 7959600 5223000 2736600 0 0 0 1909900 1000300 909520 0 0 0 16581 1764 17296 86149;86150;86151;86152 87471;87472;87473;87474;87475;87476;87477;87478 87476 8 IVASASFDK HQALINQVLFSPDSRIVASASFDKSIKLWD FSPDSRIVASASFDKSIKLWDGRTGKYLAS R I V D K S 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 936.49165 Q9NVX2;A0A0A0MRH0;K7EN33 Q9NVX2 386 394 NLE1 Notchless protein homolog 1 yes no 2 0.0017261 78.334 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 0.77286 0.762 30.932 9 Median 0.98578 0.86937 NaN 1 0 Median 0.63298 0.53396 68.423 2 1 Median 0.77286 0.762 NaN 1 0 Median 0.67558 0.59128 10.752 2 1 Median 0.69079 0.65793 NaN 1 0 Median 0.96279 0.80236 4.2226 2 0 Median 33368000 20306000 13062000 1454000 739160 714830 7633000 5449600 2183400 4941600 2604000 2337600 8613700 5376900 3236800 6290800 3886700 2404100 4434300 2249400 2185000 16582 4142 17297 86153;86154;86155;86156;86157;86158;86159;86160;86161 87479;87480;87481;87482;87483;87484;87485;87486;87487 87481 9 IVASMWDSLGEEQK IKGQNPNATFGEVSKIVASMWDSLGEEQKQ KIVASMWDSLGEEQKQVYKRKTEAAKKEYL K I V Q K Q 1 0 0 1 0 1 2 1 0 1 1 1 1 0 0 2 0 1 0 1 0 0 14 0 1591.7552 O94842;O15405;Q96NM4 O94842 256 269 TOX4;TOX3;TOX2 TOX high mobility group box family member 4;TOX high mobility group box family member 3;TOX high mobility group box family member 2 yes no 2 0.00018717 78.653 By MS/MS By matching 2 2 1.0943 1.0391 19.924 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84352 0.91133 31.535 2 0 Median 1.2023 1.0391 4.9449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11198000 5672700 5525100 0 0 0 0 0 0 9729000 4987000 4742100 1468700 685690 783020 0 0 0 0 0 0 16583 1730 17298 86162;86163;86164;86165 87488;87489 87489 2 IVASSHDHGYTTLATSVTLLK PSLWRRLATVEERKKIVASSHDHGYTTLAT DHGYTTLATSVTLLKASEVEEILDGNDEKY K I V L K A 2 0 0 1 0 0 0 1 2 1 3 1 0 0 0 3 4 0 1 2 0 0 21 0 2213.1692 G5E975;A0A0U1RQQ2;B5MCL5;A0A2R8YEE8 G5E975 63 83 SMARCB1 yes no 3;4 8.8805E-12 63.056 By MS/MS By matching By matching 3 1 1 0.90173 0.91057 11.422 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84769 0.83004 9.3579 3 0 Median 1.2416 1.0421 NaN 1 0 Median 0.92116 0.91057 NaN 1 0 Median NaN NaN NaN 0 0 Median 92099000 47968000 44132000 0 0 0 0 0 0 89602000 46780000 42822000 738590 327310 411290 1758700 859990 898760 0 0 0 16584 1128 17299 86166;86167;86168;86169;86170 87490;87491;87492;87493 87491 4 IVASTLSNPELFEEWTGNVK IVRITWSNPPAQGARIVASTLSNPELFEEW LSNPELFEEWTGNVKTMADRILTMRSELRA R I V V K T 1 0 2 0 0 0 3 1 0 1 2 1 0 1 1 2 2 1 0 2 0 0 20 0 2233.1267 P17174 P17174 306 325 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 3 1.3511E-07 57.338 By MS/MS By MS/MS By MS/MS 2 1 1 0.97044 0.88333 28.019 4 Median 1.2142 1.161 39.07 2 0 Median 1.0035 0.85724 NaN 1 0 Median 0.79403 0.88588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5955800 2931700 3024100 3469600 1679100 1790600 1273700 599660 674020 1212500 653010 559470 0 0 0 0 0 0 0 0 0 16585 2038 17300 86171;86172;86173;86174 87494;87495;87496;87497;87498 87498 5 IVATKPLYVALAQR SPEEATKAVTEMNGRIVATKPLYVALAQRK RIVATKPLYVALAQRKEERQAHLTNQYMQR R I V Q R K 3 1 0 0 0 1 0 0 0 1 2 1 0 0 1 0 1 0 1 2 0 0 14 1 1541.9293 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YB86 P11940 357 370 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2;3 5.8498E-08 132.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 6 6 3 7 6 4 1.0078 0.97053 16.38 32 Median 0.97021 0.97968 4.5438 6 0 Median 0.95269 0.91572 4.9819 6 0 Median 1.0951 1.1158 3.1998 3 0 Plateau 1.0255 0.96228 12.73 7 0 Median 1.2576 1.3289 14.598 6 0 Median 0.98754 0.86924 6.6532 4 0 Median 413700000 197940000 215760000 217440000 106460000 110980000 46389000 22999000 23390000 50067000 23678000 26389000 8874400 4161100 4713200 66026000 27920000 38106000 24906000 12723000 12182000 16586 1973 17301 86175;86176;86177;86178;86179;86180;86181;86182;86183;86184;86185;86186;86187;86188;86189;86190;86191;86192;86193;86194;86195;86196;86197;86198;86199;86200;86201;86202;86203;86204;86205;86206 87499;87500;87501;87502;87503;87504;87505;87506;87507;87508;87509;87510;87511;87512;87513;87514;87515;87516;87517;87518;87519;87520;87521;87522;87523;87524;87525 87513 27 IVATLPYIK ARGGQGAKKSAIGQRIVATLPYIKQEVPII SAIGQRIVATLPYIKQEVPIIIVFRALGFV R I V I K Q 1 0 0 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 1 0 0 9 0 1016.627 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 249 257 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.029888 36.395 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 1.0666 0.95792 8.9733 7 Median 1.0666 1.0639 NaN 1 0 Median 1.2017 1.046 NaN 1 0 Median 0.81751 0.88569 NaN 1 0 Median 1.1331 0.96545 NaN 1 0 Median 0.82945 0.86671 6.467 2 0 Median 1.1018 0.95792 NaN 1 0 Median 12099000 6416100 5683200 2039000 1192100 846900 1430600 623830 806760 3569500 2058100 1511400 387510 168860 218650 4587200 2340700 2246500 85474 32555 52919 16587 671 17302 86207;86208;86209;86210;86211;86212;86213 87526 87526 1 IVAVTGAEAQK FVIVTEEAIAKGIRRIVAVTGAEAQKALRK GIRRIVAVTGAEAQKALRKAESLKKCLSVM R I V Q K A 3 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1085.6081 P49588;H3BPK7 P49588 752 762 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.0039963 48.794 By MS/MS By matching 1 1 1.0212 0.92362 1.7259 2 Median 0.93955 0.91242 NaN 1 0 Median 1.1099 0.93496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31577000 15254000 16323000 7351400 3576700 3774700 24226000 11677000 12549000 0 0 0 0 0 0 0 0 0 0 0 0 16588 2385 17303 86214;86215 87527;87528 87527 2 IVDDLKDEAEQYR VELANKVGAAEIISRIVDDLKDEAEQYRKM SRIVDDLKDEAEQYRKMVMETIEKIMGNLG R I V Y R K 1 1 0 3 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 13 1 1592.7682 O75533 O75533 853 865 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 3.8009E-06 114.83 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.70949 0.80428 36.494 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67443 0.76454 34.329 3 2 Median 0.82513 0.79296 38.026 2 1 Median 0.82009 0.91578 52.091 2 1 Median 1.3189 1.1554 NaN 1 0 Median 64666000 36149000 28517000 0 0 0 0 0 0 35534000 21368000 14166000 13537000 6202900 7333600 14725000 8282200 6442700 870570 295340 575230 16589 1683 17304 86216;86217;86218;86219;86220;86221;86222;86223 87529;87530;87531;87532;87533;87534 87529 6 IVDDLKDEAEQYRK VELANKVGAAEIISRIVDDLKDEAEQYRKM RIVDDLKDEAEQYRKMVMETIEKIMGNLGA R I V R K M 1 1 0 3 0 1 2 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 14 2 1720.8632 O75533 O75533 853 866 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3;4 7.6261E-08 128.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 6 3 0.98823 1.1454 18.738 18 Median 1.0049 1.1422 4.6858 2 0 Median 1.206 1.1948 33.752 2 0 Median 0.91434 1.0419 20.072 3 0 Median 1.3678 1.5589 10.399 2 0 Median 0.9731 1.1454 4.1125 6 1 Median 1.3908 1.4539 27.061 3 0 Plateau 353430000 168080000 185350000 16017000 8038600 7978100 5978400 2276500 3702000 171890000 83800000 88093000 32850000 12180000 20670000 115540000 56827000 58710000 11156000 4958400 6197400 16590 1683 17305 86224;86225;86226;86227;86228;86229;86230;86231;86232;86233;86234;86235;86236;86237;86238;86239;86240;86241 87535;87536;87537;87538;87539;87540;87541;87542;87543;87544;87545;87546;87547;87548;87549;87550;87551;87552;87553;87554;87555;87556;87557;87558 87553 24 IVDDWANDGWGLK SDIFFDNFIICADRRIVDDWANDGWGLKKA RRIVDDWANDGWGLKKAADGAAEPGVVGQM R I V L K K 1 0 1 3 0 0 0 2 0 1 1 1 0 0 0 0 0 2 0 1 0 0 13 0 1487.7045 P27824 P27824 446 458 CANX Calnexin yes yes 2 1.4639E-05 133.81 By MS/MS By MS/MS 2 3 1.3378 1.1529 21.61 5 Median 1.1113 1.033 4.6844 2 0 Median 1.3451 1.1751 23.202 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33469000 15110000 18360000 22941000 10664000 12277000 10528000 4445700 6082700 0 0 0 0 0 0 0 0 0 0 0 0 16591 2158 17306 86242;86243;86244;86245;86246 87559;87560;87561;87562;87563 87562 5 IVDDWANDGWGLKK SDIFFDNFIICADRRIVDDWANDGWGLKKA RIVDDWANDGWGLKKAADGAAEPGVVGQMI R I V K K A 1 0 1 3 0 0 0 2 0 1 1 2 0 0 0 0 0 2 0 1 0 0 14 1 1615.7995 P27824 P27824 446 459 CANX Calnexin yes yes 2;3 6.232E-08 116.55 By MS/MS By matching By MS/MS By matching 3 2 1 1 1.2635 1.1869 13.351 7 Median 1.1076 1.1296 3.3549 3 2 Median 1.4677 1.3956 11.162 2 0 Median 1.2738 1.4338 NaN 1 0 Median 1.0897 1.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150560000 68420000 82140000 128470000 59221000 69250000 16698000 6669500 10028000 5039000 2367800 2671300 352890 162350 190540 0 0 0 0 0 0 16592 2158 17307 86247;86248;86249;86250;86251;86252;86253 87564;87565;87566;87567;87568;87569 87567 6 IVDGKVVSETNDTK SSNSMQTIQKTTTRRIVDGKVVSETNDTKV RIVDGKVVSETNDTKVLRH___________ R I V T K V 0 0 1 2 0 0 1 1 0 1 0 2 0 0 0 1 2 0 0 3 0 0 14 1 1503.7781 P05783 P05783 413 426 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 2.7794E-07 97.69 By MS/MS By MS/MS 2 2 1.2404 1.2098 22.651 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4213 1.5169 18.453 2 0 Median 1.2057 1.0746 3.2078 2 0 Median 31192000 13241000 17951000 0 0 0 0 0 0 0 0 0 0 0 0 18883000 7297800 11585000 12309000 5942900 6366100 16593 1869 17308 86254;86255;86256;86257 87570;87571;87572;87573;87574;87575;87576;87577 87575 8 IVDHLLASLQQGR AKLLVKCVSTPFYPRIVDHLLASLQQGRWD PRIVDHLLASLQQGRWDAEELGRHLREAGH R I V G R W 1 1 0 1 0 2 0 1 1 1 3 0 0 0 0 1 0 0 0 1 0 0 13 0 1448.81 A2RRP1;H0Y5G7;H7BZR3 A2RRP1 2312 2324 NBAS Neuroblastoma-amplified sequence yes no 3 0.02149 39.006 By MS/MS By matching 1 1 0.85587 0.79048 16.972 2 Median 0.69647 0.70109 NaN 1 0 Median 1.0518 0.89127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5315900 2777000 2538900 3944800 2180100 1764700 1371100 596920 774160 0 0 0 0 0 0 0 0 0 0 0 0 16594 500 17309 86258;86259 87578 87578 0 IVDLHSR VDECNEVTDYAIARRIVDLHSRIEESIDRV TDYAIARRIVDLHSRIEESIDRVYSLDDIR R I V S R I 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 7 0 838.4661 Q14566 Q14566 552 558 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.01596 69.998 By matching By MS/MS 1 1 1.2685 1.1807 5.1214 2 Median 1.2245 1.2242 NaN 1 0 Median 1.3141 1.1387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3832400 1679300 2153100 144420 55261 89154 3688000 1624100 2063900 0 0 0 0 0 0 0 0 0 0 0 0 16595 2881 17310 86260;86261 87579 87579 1 IVDNLGASGNSLYQR HRPKEAVLSCSQALKIVDNLGASGNSLYQR IVDNLGASGNSLYQRNLCLHLKAEALIKLS K I V Q R N 1 1 2 1 0 1 0 2 0 1 2 0 0 0 0 2 0 0 1 1 0 0 15 0 1605.8111 Q6PGP7;D6RCE2 Q6PGP7 335 349 TTC37 Tetratricopeptide repeat protein 37 yes no 2 4.1291E-32 161.94 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.0378 1.1415 25.414 5 Median 0.947 0.88865 NaN 1 1 Median 1.3664 1.1607 NaN 1 0 Median 1.0378 1.1415 NaN 1 0 Median 1.4245 1.2561 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8247 0.67653 NaN 1 0 Median 32824000 15463000 17361000 24289000 12130000 12159000 3284600 1285200 1999400 3996100 1464100 2532000 1035700 457090 578570 0 0 0 218290 126260 92034 16596 3169 17311 86262;86263;86264;86265;86266 87580;87581;87582;87583 87580 4 IVDNLQSR LSEEEIEKGVEIEEKIVDNLQSRHTAFIGD GVEIEEKIVDNLQSRHTAFIGDRN______ K I V S R H 0 1 1 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 943.50869 Q9HAB8 Q9HAB8 295 302 PPCS Phosphopantothenate--cysteine ligase yes yes 2 0.058787 48.794 By MS/MS 1 0.85069 0.71695 NaN 1 Median NaN NaN NaN 0 0 Median 0.85069 0.71695 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1890300 1090000 800300 0 0 0 1890300 1090000 800300 0 0 0 0 0 0 0 0 0 0 0 0 16597 4007 17312 86267 87584 87584 1 IVDPEIALK PQLAYALLQAQVVMRIVDPEIALKILHRQT AQVVMRIVDPEIALKILHRQTNIPTLIAGN R I V L K I 1 0 0 1 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 9 0 996.58555 P33240;E7EWR4;E9PID8;A0A0A0MT56 P33240 181 189 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.0035603 64.265 By matching By MS/MS By MS/MS By matching 1 3 5 2 1.0601 0.98968 14.214 11 Median NaN NaN NaN 0 0 Median 1.244 1.0624 NaN 1 0 Median 1.0451 1.0697 17.223 3 0 Median 1.1641 0.98968 10.23 5 0 Median 0.80795 0.79999 13.485 2 0 Median NaN NaN NaN 0 0 Median 95708000 49797000 45911000 0 0 0 4054300 1597200 2457100 78125000 41658000 36467000 9208700 4262900 4945800 4320300 2279100 2041200 0 0 0 16598 2222 17313 86268;86269;86270;86271;86272;86273;86274;86275;86276;86277;86278 87585;87586;87587;87588;87589;87590 87587 6 IVDQIRPDR ADRMLDMGFEPQIRKIVDQIRPDRQTLMWS EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ K I V D R Q 0 2 0 2 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1110.6146 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 265 273 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.0025919 115.49 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 3 3 1.0516 0.94491 24.721 16 Median 1.0057 1.0108 34.136 2 0 Median 1.1232 1.1113 37.577 3 0 Median 0.80527 0.89862 24.695 3 0 Median 1.0516 0.95549 5.0727 2 0 Median 0.80966 0.8642 17.1 3 1 Median 1.0652 0.94172 4.506 3 0 Median 88049000 44825000 43224000 4821800 2005200 2816600 13446000 6131500 7314000 31469000 17080000 14389000 6234500 2936200 3298300 19765000 10631000 9134500 12313000 6040900 6272000 16599 1334;343 17314 86279;86280;86281;86282;86283;86284;86285;86286;86287;86288;86289;86290;86291;86292;86293;86294 87591;87592;87593;87594;87595;87596;87597;87598;87599 87592 9 IVDRIDNDGDGFVTTEELK FDQLTPDESKERLGKIVDRIDNDGDGFVTT IDNDGDGFVTTEELKTWIKRVQKRYIFDNV K I V L K T 0 1 1 4 0 0 2 2 0 2 1 1 0 1 0 0 2 0 0 2 0 0 19 1 2135.0382 Q15293 Q15293 87 105 RCN1 Reticulocalbin-1 yes yes 2;3 4.0104E-30 189.69 By MS/MS By MS/MS 1 1 1.07 1.1825 11.508 2 Median 1.017 1.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1257 1.2827 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63437000 30278000 33159000 46452000 22325000 24127000 0 0 0 16985000 7953000 9031600 0 0 0 0 0 0 0 0 0 16600 2940 17315 86295;86296 87600;87601 87600 2 IVDVIGEK SVPLLKSLEVSERMKIVDVIGEKIYKDGER EVSERMKIVDVIGEKIYKDGERIITQGEKA K I V E K I 0 0 0 1 0 0 1 1 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 871.50148 P13861;H7C4A9 P13861 273 280 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 0.013918 71.501 By MS/MS 1 0.88797 0.82841 NaN 1 Median 0.88797 0.82841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8874200 5928800 2945400 8874200 5928800 2945400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16601 1998 17316 86297 87602 87602 1 IVEDAPPIDLQAEAQHASGEVEEPPR QLDSFDEFIQMSVQRIVEDAPPIDLQAEAQ AEAQHASGEVEEPPRYLLKFEQIYLSKPTH R I V P R Y 4 1 0 2 0 2 5 1 1 2 1 0 0 0 4 1 0 0 0 2 0 0 26 0 2796.3566 C9J2Y9;P30876 C9J2Y9 51 76 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.0016969 32.04 By MS/MS 1 0.63355 0.67028 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63355 0.67028 NaN 1 1 Median NaN NaN NaN 0 0 Median 2953300 1844800 1108500 0 0 0 0 0 0 0 0 0 0 0 0 2953300 1844800 1108500 0 0 0 16602 671 17317 86298 87603 87603 1 IVEDAVEQGVLK VAIIVDQRAWNLHQKIVEDAVEQGVLKTQI HQKIVEDAVEQGVLKTQIPILTYQGGSVEA K I V L K T 1 0 0 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 0 3 0 0 12 0 1298.7082 A0A0C4DGD4;H0YB62;H0YB09;Q7Z3D6 A0A0C4DGD4 391 402 C14orf159 UPF0317 protein C14orf159, mitochondrial yes no 2 0.018966 51.927 By MS/MS 1 1.0117 0.96843 NaN 1 Median 1.0117 0.96843 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5005500 2331300 2674300 5005500 2331300 2674300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16603 242 17318 86299 87604 87604 1 IVEDEPNK CASVTFKNYIKRNWRIVEDEPNKICEADRV YIKRNWRIVEDEPNKICEADRVAIKANIVH R I V N K I 0 0 1 1 0 0 2 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 8 0 942.46583 P55060 P55060 76 83 CSE1L Exportin-2 yes yes 2 0.007454 66.993 By matching By MS/MS By matching By matching 1 2 1 2 1.0965 1.0875 47.09 6 Median 0.82668 0.83767 NaN 1 0 Median 0.88656 0.78989 21.261 2 0 Median 1.2881 1.4644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6877 1.799 47.211 2 0 Median NaN NaN NaN 0 0 Median 3749200 1841400 1907800 468720 245530 223180 2394400 1278700 1115700 81336 39055 42280 0 0 0 804740 278120 526620 0 0 0 16604 2493 17319 86300;86301;86302;86303;86304;86305 87605;87606 87605 2 IVEDEPNKICEADR CASVTFKNYIKRNWRIVEDEPNKICEADRV RIVEDEPNKICEADRVAIKANIVHLMLSSP R I V D R V 1 1 1 2 1 0 3 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 14 1 1686.7883 P55060 P55060 76 89 CSE1L Exportin-2 yes yes 3 0.0003848 49.929 By MS/MS 2 0.99275 0.9627 7.6958 2 Median NaN NaN NaN 0 0 Median 0.99275 0.9627 7.6958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6278100 2734000 3544100 0 0 0 6278100 2734000 3544100 0 0 0 0 0 0 0 0 0 0 0 0 16605 2493 17320 86306;86307 87607;87608;87609 87607 3 IVEEWVK IEKSPDAKILRAVVKIVEEWVKNNSPMAAN KILRAVVKIVEEWVKNNSPMAANQTPTLRE K I V V K N 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 2 0 0 7 0 901.49092 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2352 2358 TRRAP Transformation/transcription domain-associated protein yes no 2 0.026054 53.554 By MS/MS 1 0.93889 1.005 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93889 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8743900 4422400 4321500 0 0 0 0 0 0 8743900 4422400 4321500 0 0 0 0 0 0 0 0 0 16606 991 17321 86308 87610;87611 87611 2 IVEGISQPIWLVSDTR GEEKRQADPGFFCRKIVEGISQPIWLVSDT VEGISQPIWLVSDTRRVSDIQWFREAYGAV K I V T R R 0 1 0 1 0 1 1 1 0 3 1 0 0 0 1 2 1 1 0 2 0 0 16 0 1811.9781 Q15126 Q15126 95 110 PMVK Phosphomevalonate kinase yes yes 2 8.0788E-05 67.153 By MS/MS 1 0.5991 0.56512 NaN 1 Median 0.5991 0.56512 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3704600 2115900 1588700 3704600 2115900 1588700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16607 2931 17322 86309 87612 87612 1 IVEIPFNSTNK LCCGSVKEMRERYAKIVEIPFNSTNKYQLS RYAKIVEIPFNSTNKYQLSIHKNPNTSEPQ K I V N K Y 0 0 2 0 0 0 1 0 0 2 0 1 0 1 1 1 1 0 0 1 0 0 11 0 1260.6714 P05023 P05023 477 487 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.00014501 113.62 By MS/MS By MS/MS By MS/MS 3 3 1 1.03 0.92174 13.178 7 Median 0.98278 0.88728 8.8389 3 0 Median 1.03 0.92174 17.508 3 0 Median 1.0454 1.1235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 185730000 91515000 94215000 108110000 53814000 54295000 71883000 34587000 37296000 5737100 3113900 2623200 0 0 0 0 0 0 0 0 0 16608 1857 17323 86310;86311;86312;86313;86314;86315;86316 87613;87614;87615;87616;87617;87618;87619;87620;87621;87622;87623;87624 87617 12 IVEIPFNSTNKYQLSIHK LCCGSVKEMRERYAKIVEIPFNSTNKYQLS IPFNSTNKYQLSIHKNPNTSEPQHLLVMKG K I V H K N 0 0 2 0 0 1 1 0 1 3 1 2 0 1 1 2 1 0 1 1 0 0 18 1 2130.1473 P05023 P05023 477 494 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 4 0.039987 12.714 By MS/MS 1 0.79588 0.866 NaN 1 Median 0.79588 0.866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5435100 2896700 2538400 5435100 2896700 2538400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16609 1857 17324 86317 87625 87625 1 IVELMGR LAFLNVQAAEEALPRIVELMGRELNWDDYK AAEEALPRIVELMGRELNWDDYKKQEQLET R I V G R E 0 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 7 0 816.45276 P43304 P43304 573 579 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.017757 64.803 By MS/MS By matching 2 1 0.59946 0.7298 33.186 3 Median 0.81265 0.80097 46.314 2 0 Median 0.59946 0.7298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4730100 2176900 2553200 4133200 1868000 2265200 596950 308960 287990 0 0 0 0 0 0 0 0 0 0 0 0 16610 2325 17325 86318;86319;86320 87626 87626 1 IVELPAPADFLSLSSETKPK GLGSAAHGSQPDLRRIVELPAPADFLSLSS APADFLSLSSETKPKLMTPDAFMTPSASLQ R I V P K L 2 0 0 1 0 0 2 0 0 1 3 2 0 1 3 3 1 0 0 1 0 0 20 1 2141.162 Q6P2E9 Q6P2E9 572 591 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.017752 17.824 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.85243 0.86585 34.873 5 Median 0.85243 0.86585 NaN 1 0 Median 0.86685 0.83066 49.304 2 0 Median 0.4983 0.57022 NaN 1 0 Median 1.2301 1.1399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7059900 4223100 2836700 2198600 1185300 1013300 2180300 1242900 937410 2602700 1757400 845300 78235 37498 40738 0 0 0 0 0 0 16611 3155 17326 86321;86322;86323;86324;86325 87627;87628;87629;87630;87631 87630 5 IVEMSTSK LRKNGFVVLKGRPCKIVEMSTSKTGKHGHA LKGRPCKIVEMSTSKTGKHGHAKVHLVGID K I V S K T 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 2 1 0 0 1 0 0 8 0 893.45282 I3L397;I3L504;P63241;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 40 47 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 yes no 1;2 0.004322 82.241 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 2 1.2088 1.1292 17.189 9 Median 0.99614 0.94292 11.333 4 0 Median 1.3929 1.2037 9.0434 2 0 Median 0.98875 0.93124 NaN 1 0 Median 1.6476 1.3557 0.95699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35716000 15880000 19836000 13145000 6337600 6807400 14002000 5399900 8602200 5997300 3110500 2886900 2571100 1031800 1539300 0 0 0 0 0 0 16612 1287 17327 86326;86327;86328;86329;86330;86331;86332;86333;86334 87632;87633;87634;87635;87636;87637;87638 87634 7 IVENGQERVEVEEDGQLK TSTKMVNGRKITTKRIVENGQERVEVEEDG NGQERVEVEEDGQLKSLT____________ R I V L K S 0 1 1 1 0 2 5 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 18 1 2070.0229 C9J2C4;A0A0J9YX62;O75190;Q8NHS0 C9J2C4 208 225 DNAJB6;DNAJB8 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 8 yes no 3 0.0075448 24.287 By MS/MS 1 1.0535 1.1042 NaN 1 Median 1.0535 1.1042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5549300 2588600 2960800 5549300 2588600 2960800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16613 291 17328 86335 87639 87639 1 IVENLGILTGPQLFSLNKEELK DEVRAWLEAKAFSPRIVENLGILTGPQLFS LTGPQLFSLNKEELKKVCGEEGVRVYSQLT R I V L K K 0 0 2 0 0 1 3 2 0 2 5 2 0 1 1 1 1 0 0 1 0 0 22 1 2454.3734 A0A3B3ISQ4;Q9H6S3 A0A3B3ISQ4 646 667 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 3 5.6187E-05 36.523 By MS/MS 2 0.70942 0.72022 26.334 2 Median NaN NaN NaN 0 0 Median 0.70942 0.72022 26.334 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4287300 2368400 1918900 0 0 0 4287300 2368400 1918900 0 0 0 0 0 0 0 0 0 0 0 0 16614 426 17329 86336;86337 87640;87641 87641 2 IVEPPENIQEK TNIDTLLVATDQTERIVEPPENIQEKIAFI QTERIVEPPENIQEKIAFIFNNLSQSNMTQ R I V E K I 0 0 1 0 0 1 3 0 0 2 0 1 0 0 2 0 0 0 0 1 0 0 11 0 1294.6769 A5YKK6;H3BVC9 A5YKK6 1088 1098 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0059412 48.423 By MS/MS By matching By MS/MS 1 1 1 0.90381 0.92414 15.575 3 Plateau NaN NaN NaN 0 0 Median 0.94355 0.83657 NaN 1 0 Median 0.90381 1.0209 NaN 1 0 Median 0.82938 0.751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13622000 6600100 7022000 0 0 0 5544700 2627300 2917500 6111700 2805100 3306600 1965700 1167800 797910 0 0 0 0 0 0 16615 503 17330 86338;86339;86340 87642;87643 87642 2 IVEPYIAWGYPNLK GTFVKLNKASINMLRIVEPYIAWGYPNLKS RIVEPYIAWGYPNLKSVNELIYKRGYGKIN R I V L K S 1 0 1 0 0 0 1 1 0 2 1 1 0 0 2 0 0 1 2 1 0 0 14 0 1661.8817 P18124;A8MUD9 P18124 135 148 RPL7 60S ribosomal protein L7 yes no 2;3 2.4439E-07 111.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 2 2 2 3 0.87432 0.78874 32.847 15 Median 0.79232 0.73619 51.937 6 3 Median 0.91581 0.77045 3.3191 2 0 Median 0.84823 0.81064 5.2548 2 0 Median 1.0381 0.86562 2.8897 2 0 Median 0.88732 0.88831 18.871 3 0 Median NaN NaN NaN 0 0 Median 677320000 358200000 319130000 388660000 208600000 180070000 103010000 51002000 52006000 14816000 7702500 7113300 5298800 2545900 2752800 165540000 88349000 77187000 0 0 0 16616 2056 17331 86341;86342;86343;86344;86345;86346;86347;86348;86349;86350;86351;86352;86353;86354;86355 87644;87645;87646;87647;87648;87649;87650;87651;87652;87653;87654;87655;87656;87657;87658;87659;87660;87661;87662;87663;87664;87665;87666;87667;87668 87649 25 IVEPYVTWGFPNLK GVFVKVTPQNLKMLRIVEPYVTWGFPNLKS RIVEPYVTWGFPNLKSVRELILKRGQAKVK R I V L K S 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 1 1 1 2 0 0 14 0 1661.8817 Q6DKI1;R4GMU7 Q6DKI1 142 155 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 5.1659E-06 94.297 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 3 0.90769 0.7981 17.839 8 Median 0.77265 0.75007 NaN 1 0 Median 1.0667 0.91341 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63412 0.52305 NaN 1 0 Median 0.83688 0.83186 8.7994 2 0 Median 1.0444 0.87714 9.0551 3 0 Plateau 28989000 15867000 13122000 1068800 560810 507950 486240 243250 242990 0 0 0 34843 18652 16191 23320000 13089000 10230000 4079400 1955300 2124100 16617 3132 17332 86356;86357;86358;86359;86360;86361;86362;86363 87669;87670;87671;87672 87671 4 IVEQDTMPPK ADRMLDMGFEPQIRRIVEQDTMPPKGVRHT PQIRRIVEQDTMPPKGVRHTMMFSATFPKE R I V P K G 0 0 0 1 0 1 1 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 10 0 1156.5798 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 363 372 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00037374 87.639 By MS/MS By MS/MS By MS/MS 1 1 1 0.81865 0.69814 221.23 3 Median 0.018177 0.018242 NaN 1 1 Median 0.81865 0.69814 NaN 1 0 Median 0.93125 0.99092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35135000 30687000 4447700 27628000 27013000 615580 4247600 2183000 2064600 3259300 1491800 1767600 0 0 0 0 0 0 0 0 0 16618 263 17333;17334 86364;86365;86366 87673;87674;87675;87676;87677 87676 115 5 IVEQPTVSVTEPK FKVNLDSEQAVKEEKIVEQPTVSVTEPKLA EKIVEQPTVSVTEPKLATPAGLKKSSKKAE K I V P K L 0 0 0 0 0 1 2 0 0 1 0 1 0 0 2 1 2 0 0 3 0 0 13 0 1425.7715 Q15054 Q15054 262 274 POLD3 DNA polymerase delta subunit 3 yes yes 2 4.4307E-07 110.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.63741 0.6089 19.471 6 Median 0.56588 0.53022 NaN 1 0 Median 0.696 0.59736 NaN 1 0 Median 0.57918 0.60348 3.9697 2 0 Median 0.91733 0.79971 20.614 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27037000 15830000 11207000 14402000 8307900 6094400 3448600 2124400 1324200 5207600 3566400 1641300 3978100 1831200 2146900 0 0 0 0 0 0 16619 2921 17335 86367;86368;86369;86370;86371;86372 87678;87679;87680;87681;87682;87683;87684 87679 7 IVESDVGDSFYIR EVTILAQKKKDVYRRIVESDVGDSFYIRTH RRIVESDVGDSFYIRTHFEYEKESPYGLSF R I V I R T 0 1 0 2 0 0 1 1 0 2 0 0 0 1 0 2 0 0 1 2 0 0 13 0 1498.7304 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 498 510 TJP1 Tight junction protein ZO-1 yes no 2 0.00031274 77.379 By MS/MS By MS/MS By matching 1 1 1 1.055 1.0351 1.1546 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94842 1.0436 NaN 1 0 Median 1.1735 1.0267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6088400 3029900 3058500 0 0 0 0 0 0 5634000 2820900 2813100 454460 209040 245420 0 0 0 0 0 0 16620 104 17336 86373;86374;86375 87685;87686 87686 2 IVETEAYLGPEDEAAHSR VLVRRLPNGTELRGRIVETEAYLGPEDEAA TEAYLGPEDEAAHSRGGRQTPRNRGMFMKP R I V S R G 3 1 0 1 0 0 4 1 1 1 1 0 0 0 1 1 1 0 1 1 0 0 18 0 1985.933 P29372;A2IDA3 P29372 121 138 MPG DNA-3-methyladenine glycosylase yes no 2;3 1.477E-11 101.67 By matching By MS/MS By MS/MS 1 2 3 0.8748 0.79263 17.354 6 Median 0.56528 0.54589 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81758 0.79263 0.29582 2 0 Median 1.0365 0.86795 6.5778 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147280000 79039000 68242000 2346300 1306300 1040000 0 0 0 124710000 67604000 57110000 20221000 10129000 10092000 0 0 0 0 0 0 16621 2170 17337 86376;86377;86378;86379;86380;86381 87687;87688;87689;87690;87691;87692;87693;87694;87695;87696;87697 87688 11 IVEVLLMK TNEKALEAVFGKYGRIVEVLLMKDRETNKS VFGKYGRIVEVLLMKDRETNKSRGFAFVTF R I V M K D 0 0 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 8 0 943.57763 P38159;H3BT71;H0Y6E7;H3BR27;O75526 P38159 34 41 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2 0.00020553 129.4 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 9 12 7 1.1832 1.1575 12.365 34 Median 1.1495 1.0842 NaN 1 0 Median 1.6302 1.395 25.967 3 0 Plateau 1.0203 1.0452 7.6357 4 0 Median 1.5188 1.2984 9.8336 9 0 Median 1.0572 1.0843 9.4525 11 2 Median 1.3993 1.1607 10.084 6 0 Median 324240000 149410000 174830000 402460 192520 209950 5658700 2168600 3490100 43194000 20850000 22344000 46943000 19634000 27310000 207580000 97935000 109650000 20454000 8626400 11828000 16622 2273 17338;17339 86382;86383;86384;86385;86386;86387;86388;86389;86390;86391;86392;86393;86394;86395;86396;86397;86398;86399;86400;86401;86402;86403;86404;86405;86406;86407;86408;86409;86410;86411;86412;86413;86414;86415;86416;86417 87698;87699;87700;87701;87702;87703;87704;87705;87706;87707;87708;87709;87710;87711;87712;87713;87714;87715;87716;87717;87718;87719;87720;87721;87722;87723;87724;87725;87726 87726 1025 29 IVEVLLMKDR TNEKALEAVFGKYGRIVEVLLMKDRETNKS GKYGRIVEVLLMKDRETNKSRGFAFVTFES R I V D R E 0 1 0 1 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 10 1 1214.7057 P38159;H3BT71;H0Y6E7;H3BR27;O75526 P38159 34 43 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2;3 0.00013492 123.86 By MS/MS By MS/MS By MS/MS 2 8 3 1.0564 1.1274 20.322 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5912 1.5247 13.227 2 1 Median 0.99452 1.042 11.807 8 2 Median 1.5162 1.3821 7.6067 3 0 Median 120150000 54971000 65184000 0 0 0 0 0 0 0 0 0 12258000 5404200 6853300 96117000 45124000 50993000 11780000 4442900 7337500 16623 2273 17340;17341 86418;86419;86420;86421;86422;86423;86424;86425;86426;86427;86428;86429;86430 87727;87728;87729;87730;87731;87732;87733;87734;87735 87733 1025 8 IVEVLLMKDRETNK TNEKALEAVFGKYGRIVEVLLMKDRETNKS RIVEVLLMKDRETNKSRGFAFVTFESPADA R I V N K S 0 1 1 1 0 0 2 0 0 1 2 2 1 0 0 0 1 0 0 2 0 0 14 2 1686.9338 P38159;H3BT71;H0Y6E7;H3BR27;O75526 P38159 34 47 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2;3;4 6.5262E-08 113.24 By MS/MS By MS/MS 7 3 0.93116 1.0616 13.725 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84906 0.98965 10.979 7 0 Median 1.4051 1.3088 10.854 3 0 Median 166910000 83742000 83168000 0 0 0 0 0 0 0 0 0 0 0 0 143310000 73690000 69616000 23603000 10052000 13552000 16624 2273 17342;17343 86431;86432;86433;86434;86435;86436;86437;86438;86439;86440 87736;87737;87738;87739;87740;87741;87742;87743;87744;87745 87744 1025 10 IVEWNGK YVFLTGEDSYLNFTKIVEWNGKTSVYITFS DSYLNFTKIVEWNGKTSVYITFSDYESVQG K I V G K T 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 1 0 1 0 0 7 0 844.4443 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PRF6 A0A1W2PPU6 228 234 SCARB2 Lysosome membrane protein 2 yes no 2 0.012521 88.734 By MS/MS By MS/MS 1 1 1.2007 1.112 12.89 2 Median 1.0451 1.0152 NaN 1 1 Median 1.3795 1.2182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5322000 2372800 2949200 2988700 1428900 1559900 2333300 943970 1389300 0 0 0 0 0 0 0 0 0 0 0 0 16625 340 17344 86441;86442 87746;87747 87746 2 IVEYEKEMEK DVKSCAEWVSLSKARIVEYEKEMEKMKNLI LSKARIVEYEKEMEKMKNLIPFDQMTIEDL R I V E K M 0 0 0 0 0 0 4 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1296.6272 O75947 O75947 112 121 ATP5H ATP synthase subunit d, mitochondrial yes yes 2;3 9.5939E-06 120.12 By MS/MS By MS/MS 4 3 1.1814 1.1408 11.313 6 Median 1.1604 1.1757 11.587 3 1 Plateau 1.382 1.2222 7.146 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26215000 12475000 13740000 16857000 8530300 8326900 9357400 3944300 5413100 0 0 0 0 0 0 0 0 0 0 0 0 16626 1711 17345 86443;86444;86445;86446;86447;86448;86449 87748;87749;87750;87751;87752;87753;87754;87755;87756 87751 9 IVFAAGNFWGR KWGYTVKGIQKYKAKIVFAAGNFWGRTLSA YKAKIVFAAGNFWGRTLSAISSSTDPTSYD K I V G R T 2 1 1 0 0 0 0 2 0 1 0 0 0 2 0 0 0 1 0 1 0 0 11 0 1236.6404 P04181 P04181 170 180 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.00019639 75.213 By MS/MS By MS/MS By MS/MS By matching 5 2 2 2 1.32 1.2007 11.833 11 Median 1.1851 1.1677 17.932 5 0 Median 1.3817 1.1851 1.8459 2 0 Median 1.1927 1.2353 4.5578 2 0 Median 1.5155 1.3022 0.53193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94856000 41280000 53576000 60204000 26226000 33978000 21634000 9085500 12548000 12136000 5648900 6487000 882900 319680 563220 0 0 0 0 0 0 16627 1846 17346 86450;86451;86452;86453;86454;86455;86456;86457;86458;86459;86460 87757;87758;87759;87760;87761;87762;87763;87764;87765;87766;87767;87768;87769 87760 13 IVFDAGFFR CAETAVSVIPKEVDKIVFDAGFFRVESPVK PKEVDKIVFDAGFFRVESPVKLFSGLSVSS K I V F R V 1 1 0 1 0 0 0 1 0 1 0 0 0 3 0 0 0 0 0 1 0 0 9 0 1070.5549 Q15398 Q15398 607 615 DLGAP5 Disks large-associated protein 5 yes yes 2 0.039605 33.797 By MS/MS By matching 1 2 1.2922 1.071 19.345 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3138 1.4039 NaN 1 0 Median 1.1887 1.0167 7.367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2337800 967650 1370200 0 0 0 0 0 0 1983100 794550 1188600 354710 173100 181610 0 0 0 0 0 0 16628 2948 17347 86461;86462;86463 87770 87770 1 IVFPHGITLDLVSR CDMDGQNRTKLVDSKIVFPHGITLDLVSRL KIVFPHGITLDLVSRLVYWADAYLDYIEVV K I V S R L 0 1 0 1 0 0 0 1 1 2 2 0 0 1 1 1 1 0 0 2 0 0 14 0 1565.893 Q07954;Q6PJ72 Q07954 366 379 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes no 3 0.0004128 48.14 By MS/MS By matching 1 1 1.4781 1.3881 4.3277 2 Median 1.4438 1.4312 NaN 1 0 Median 1.5132 1.3462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7422200 3337800 4084400 7210300 3262600 3947600 211960 75189 136770 0 0 0 0 0 0 0 0 0 0 0 0 16629 2733 17348 86464;86465 87771 87771 1 IVFQEFR VLEGIRICRQGFPNRIVFQEFRQRYEILTP CRQGFPNRIVFQEFRQRYEILTPNAIPKGF R I V F R Q 0 1 0 0 0 1 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 7 0 937.50215 P35580 P35580 719 725 MYH10 Myosin-10 no no 2 0.0012078 132.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.2995 1.1808 18.505 6 Median 1.2482 1.1712 NaN 1 0 Median 1.3861 1.1981 0.91153 2 0 Median 0.83579 0.911 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85122 0.87012 NaN 1 0 Median 1.7005 1.4131 NaN 1 0 Median 101570000 50422000 51149000 29621000 13179000 16442000 24653000 10461000 14192000 25921000 15372000 10549000 0 0 0 18312000 10202000 8110800 3063100 1208500 1854700 16630 2245 17349 86466;86467;86468;86469;86470;86471 87772;87773;87774;87775;87776;87777;87778;87779;87780;87781 87773 10 IVFSGNLFQHQEDSKK PQAQLLWRKVPLDERIVFSGNLFQHQEDSK VFSGNLFQHQEDSKKWRNRFSLVPHNYGLV R I V K K W 0 0 1 1 0 2 1 1 1 1 1 2 0 2 0 2 0 0 0 1 0 0 16 1 1875.9479 Q96TA1 Q96TA1 69 84 FAM129B Niban-like protein 1 yes yes 3 0.0010221 34.485 By MS/MS By matching By matching By matching 1 1 1 1 0.98954 0.97334 27.802 4 Median 0.81936 0.84368 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2474 1.4265 NaN 1 0 Median 1.1495 1.1229 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85187 0.77654 NaN 1 0 Median 11402000 5222800 6179500 6665200 3361700 3303500 0 0 0 3827800 1526600 2301200 685060 231660 453410 0 0 0 224360 102890 121470 16631 3743 17350 86472;86473;86474;86475 87782 87782 1 IVFVTGNAK ______________________________ SLVGKKIVFVTGNAKKLEEVVQILGDKFPC K I V A K K 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 2 0 0 9 0 947.54402 Q9BY32 Q9BY32 10 18 ITPA Inosine triphosphate pyrophosphatase yes yes 2 0.0004575 96.492 By MS/MS 1 0.74732 0.69201 NaN 1 Median 0.74732 0.69201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24725000 16376000 8349000 24725000 16376000 8349000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16632 3884 17351 86476 87783 87783 1 IVGDLAQFMVQNGLSR NQMLGDLIKVTPSSKIVGDLAQFMVQNGLS VGDLAQFMVQNGLSRAEAEAQAEELSFPRS K I V S R A 1 1 1 1 0 2 0 2 0 1 2 0 1 1 0 1 0 0 0 2 0 0 16 0 1746.9087 P11498 P11498 913 928 PC Pyruvate carboxylase, mitochondrial yes yes 2 6.9084E-10 104.24 By MS/MS By MS/MS 1 1 1.1141 1.0158 14.298 2 Median 1.1541 1.1239 NaN 1 0 Median 1.0756 0.91816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6227600 2923300 3304300 3113000 1492000 1621000 3114600 1431300 1683300 0 0 0 0 0 0 0 0 0 0 0 0 16633 1967 17352 86477;86478 87784;87785;87786 87785 3 IVGDYQQLEER SFVKSMSSLQNDRDRIVGDYQQLEERHLSI DRDRIVGDYQQLEERHLSIILEKDQLIQEA R I V E R H 0 1 0 1 0 2 2 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1348.6623 Q14789 Q14789 2476 2486 GOLGB1 Golgin subfamily B member 1 yes yes 2 5.5908E-05 153.05 By MS/MS By MS/MS By MS/MS 1 1 1 1.0151 0.94332 26.268 3 Median 0.97407 0.94332 NaN 1 0 Median 1.0151 0.81165 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5553 1.3531 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69949000 34999000 34950000 38614000 19198000 19416000 30461000 15390000 15070000 0 0 0 873980 410680 463290 0 0 0 0 0 0 16634 2900 17353 86479;86480;86481 87787;87788;87789;87790;87791 87788 5 IVGELEQMVSEDVPLDHR GYEKNTEAARDAILRIVGELEQMVSEDVPL ELEQMVSEDVPLDHRVHARIIGARGKAIRK R I V H R V 0 1 0 2 0 1 3 1 1 1 2 0 1 0 1 1 0 0 0 3 0 0 18 0 2065.015 Q00341;A0A024R4E5 Q00341 1120 1137 HDLBP Vigilin yes no 3 7.6967E-07 80.638 By MS/MS By MS/MS By MS/MS By matching 2 5 2 1 1.0973 0.95556 33.34 10 Median 0.7501 0.7083 51.747 2 0 Median 1.0635 0.92026 12.815 5 0 Median 1.3782 1.5087 26.551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.177 0.95216 NaN 1 0 Median 49330000 24170000 25161000 18458000 9395400 9062600 22489000 10958000 11530000 5634000 2536400 3097600 0 0 0 0 0 0 2749500 1279500 1470100 16635 4 17354;17355 86482;86483;86484;86485;86486;86487;86488;86489;86490;86491 87792;87793;87794;87795;87796;87797;87798;87799 87798 1 8 IVGGVTHANSYYK QLLASGMKEVTRTWKIVGGVTHANSYYKNG WKIVGGVTHANSYYKNGWIVMIAIGWARGA K I V Y K N 1 0 1 0 0 0 0 2 1 1 0 1 0 0 0 1 1 0 2 2 0 0 13 0 1407.7147 A0A0A0MRS4;Q9NVV0;H7C3B3 A0A0A0MRS4 72 84 TMEM38B Trimeric intracellular cation channel type B yes no 3 0.028804 35.3 By MS/MS 1 0.92727 0.81175 NaN 1 Median NaN NaN NaN 0 0 Median 0.92727 0.81175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6379500 3444200 2935300 0 0 0 6379500 3444200 2935300 0 0 0 0 0 0 0 0 0 0 0 0 16636 170 17356 86492 87800 87800 0 IVGHLTHALK GAVSLGHPIGMSGARIVGHLTHALKQGEYG MSGARIVGHLTHALKQGEYGLASICNGGGG R I V L K Q 1 0 0 0 0 0 0 1 2 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1087.6502 P24752 P24752 394 403 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.00024769 127.68 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.1377 1.0453 20.727 6 Median 0.96818 0.90387 NaN 1 0 Median 1.353 1.1505 16.521 2 0 Median 1.0332 1.0673 NaN 1 0 Median 1.0727 0.90538 NaN 1 0 Median 1.5429 1.5235 NaN 1 0 Median NaN NaN NaN 0 0 Median 34850000 15826000 19023000 5070100 2450900 2619300 11164000 4444200 6719800 15808000 7677200 8130800 1412700 625670 787040 1394800 628300 766490 0 0 0 16637 2126 17357 86493;86494;86495;86496;86497;86498 87801;87802;87803;87804 87803 4 IVGLDQVTGMTETAFGSAYK SSDRFVAELWKDVDRIVGLDQVTGMTETAF QVTGMTETAFGSAYKTKKGMFRTVGQLYKE R I V Y K T 2 0 0 1 0 1 1 3 0 1 1 1 1 1 0 1 3 0 1 2 0 0 20 0 2087.0245 P35580 P35580 625 644 MYH10 Myosin-10 yes yes 2;3 7.4688E-10 89.013 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 1 1.0615 1.023 24.815 11 Median 1.1545 1.1146 5.75 3 0 Median 1.3065 1.1592 2.295 2 0 Median 0.66292 0.73531 28.705 3 0 Median NaN NaN NaN 0 0 Median 0.70332 0.7271 18.699 2 0 Median 0.78274 0.68083 NaN 1 0 Median 48878000 24489000 24388000 23333000 10791000 12542000 9918300 4337200 5581100 13372000 8046800 5325300 0 0 0 2188200 1283000 905190 65961 30969 34992 16638 2245 17358;17359 86499;86500;86501;86502;86503;86504;86505;86506;86507;86508;86509 87805;87806;87807;87808;87809;87810;87811;87812;87813;87814 87806 1003 10 IVGLQYK HKQIMENAEINNIIKIVGLQYKKNYEDEDS AEINNIIKIVGLQYKKNYEDEDSLKTLRYG K I V Y K K 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 819.48544 P11388;Q02880;E9PCY5 P11388 513 519 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0030756 109.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.3735 1.2129 9.9366 6 Median NaN NaN NaN 0 0 Median 1.4041 1.24 NaN 1 0 Median 1.0649 1.1732 NaN 1 0 Median 1.6673 1.5033 NaN 1 1 Median 1.244 1.3028 NaN 1 1 Median 1.3912 1.1684 2.1695 2 1 Median 58658000 25413000 33245000 0 0 0 1967400 889990 1077400 19643000 9059100 10584000 4786100 1869800 2916300 17172000 7501800 9670700 15089000 6092800 8996000 16639 1963;2704 17360 86510;86511;86512;86513;86514;86515;86516 87815;87816;87817;87818;87819;87820;87821;87822;87823 87817 9 IVGLQYKK HKQIMENAEINNIIKIVGLQYKKNYEDEDS EINNIIKIVGLQYKKNYEDEDSLKTLRYGK K I V K K N 0 0 0 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 1 1 0 0 8 1 947.5804 P11388;Q02880;E9PCY5 P11388 513 520 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0048418 98.133 By MS/MS By MS/MS By MS/MS 1 1 2 1.153 1.1311 9.6279 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.825 0.9489 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0646 1.1482 NaN 1 0 Median 1.2728 1.1434 3.6475 2 0 Median 29993000 13757000 16236000 0 0 0 0 0 0 2972000 1576100 1395800 0 0 0 9961800 4532500 5429200 17059000 7648800 9410600 16640 1963;2704 17361 86517;86518;86519;86520 87824;87825;87826;87827;87828 87825 5 IVGLSTALANAR SRTNFISSHTEKPVRIVGLSTALANARDLA PVRIVGLSTALANARDLADWLNIKQMGLFN R I V A R D 3 1 1 0 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 12 0 1184.6877 Q8N3C0 Q8N3C0 1486 1497 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 4.8954E-06 129.38 By MS/MS By MS/MS By MS/MS 2 2 1 1.0463 0.95194 19.415 5 Median 0.89928 0.86366 13.763 2 0 Median 1.1651 0.95131 12.902 2 0 Median 1.2146 1.3041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41880000 19466000 22414000 20336000 10062000 10274000 16248000 7038700 9209300 5295900 2365100 2930800 0 0 0 0 0 0 0 0 0 16641 3366 17362 86521;86522;86523;86524;86525 87829;87830;87831;87832;87833;87834 87834 6 IVGPEENLSQAEAR KVFFDKAKHEIKTIKIVGPEENLSQAEARN KIVGPEENLSQAEARNMGMDFCRQDEKCDY K I V A R N 2 1 1 0 0 1 3 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 14 0 1511.758 O00469;E7ETU9 O00469 359 372 PLOD2 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 yes no 2 3.9343E-07 116.23 By MS/MS By MS/MS 1 1 1.0765 0.98764 31.999 2 Median 0.81126 0.78764 NaN 1 0 Median 1.4284 1.2384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6051400 3307600 2743800 3365700 2029300 1336400 2685800 1278400 1407400 0 0 0 0 0 0 0 0 0 0 0 0 16642 890 17363 86526;86527 87835;87836;87837 87836 3 IVGPSGAAVPCK VKSKGAGGQGKVASKIVGPSGAAVPCKVEP ASKIVGPSGAAVPCKVEPGLGADNSVVRFL K I V C K V 2 0 0 0 1 0 0 2 0 1 0 1 0 0 2 1 0 0 0 2 0 0 12 0 1154.6118 P21333;Q60FE5;A0A087WWY3 P21333 1008 1019 FLNA Filamin-A no no 2 0.00027282 83.499 By MS/MS 2 0.85821 0.76449 15.707 2 Median NaN NaN NaN 0 0 Median 0.85821 0.76449 15.707 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43158000 23594000 19564000 0 0 0 43158000 23594000 19564000 0 0 0 0 0 0 0 0 0 0 0 0 16643 2088;3120 17364 86528;86529 87838;87839;87840;87841;87842 87840 5 IVGPSGAAVPCKVEPGLGADNSVVR VKSKGAGGQGKVASKIVGPSGAAVPCKVEP CKVEPGLGADNSVVRFLPREEGPYEVEVTY K I V V R F 3 1 1 1 1 0 1 4 0 1 1 1 0 0 3 2 0 0 0 5 0 0 25 1 2448.2795 P21333;Q60FE5;A0A087WWY3 P21333 1008 1032 FLNA Filamin-A no no 3 9.4237E-13 56.72 By MS/MS 1 0.67639 0.62864 NaN 1 Median NaN NaN NaN 0 0 Median 0.67639 0.62864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7203800 3851400 3352400 0 0 0 7203800 3851400 3352400 0 0 0 0 0 0 0 0 0 0 0 0 16644 2088;3120 17365 86530 87843 87843 1 IVGSKPLYVALAQR SPEEATKAVTEMNGRIVGSKPLYVALAQRK RIVGSKPLYVALAQRKEERKAHLTNQYMQR R I V Q R K 2 1 0 0 0 1 0 1 0 1 2 1 0 0 1 1 0 0 1 2 0 0 14 1 1513.898 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 357 370 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2;3 1.8792E-07 105.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 3 4 3 1.128 1.0864 22.607 23 Median 1.128 1.1608 27.631 5 0 Median 0.97069 0.90839 10.82 5 0 Median 1.171 1.2448 21.183 3 0 Median 1.2219 1.1645 19.784 3 0 Median 1.2731 1.3766 12.113 4 0 Median 1.1212 1.0213 3.7448 3 0 Median 147540000 68543000 78993000 78828000 37089000 41738000 20944000 10671000 10273000 21328000 9671600 11657000 1930800 803750 1127100 19407000 7842000 11565000 5098400 2466000 2632500 16645 576;1151 17366 86531;86532;86533;86534;86535;86536;86537;86538;86539;86540;86541;86542;86543;86544;86545;86546;86547;86548;86549;86550;86551;86552;86553 87844;87845;87846;87847;87848;87849;87850;87851;87852;87853;87854;87855;87856;87857;87858 87846 15 IVGWYHTGPK ENMYGMFKKVNARERIVGWYHTGPKLHKND NARERIVGWYHTGPKLHKNDIAINELMKRY R I V P K L 0 0 0 0 0 0 0 2 1 1 0 1 0 0 1 0 1 1 1 1 0 0 10 0 1156.6029 P51665;H3BNT7;H3BTM8 P51665 91 100 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2 0.00033827 85.676 By MS/MS By MS/MS By MS/MS 1 1 1 0.77167 0.81992 18.67 3 Median 1.0092 0.9339 NaN 1 0 Median 0.7573 0.64626 NaN 1 0 Median 0.77167 0.81992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25235000 13299000 11935000 13385000 6533000 6852400 7255800 4253000 3002800 4593300 2513200 2080200 0 0 0 0 0 0 0 0 0 16646 2440 17367 86554;86555;86556 87859;87860;87861;87862;87863 87860 5 IVGYPTSFMSLR KSPAHWNQVVSEAEKIVGYPTSFMSLRCLL AEKIVGYPTSFMSLRCLLSDELSNIAMQVR K I V L R C 0 1 0 0 0 0 0 1 0 1 1 0 1 1 1 2 1 0 1 1 0 0 12 0 1369.7064 Q86YH6 Q86YH6 59 70 PDSS2 Decaprenyl-diphosphate synthase subunit 2 yes yes 2 0.021112 32.32 By MS/MS By matching 1 1 0.51828 0.54755 83.507 2 Median 0.96578 0.98824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27813 0.30337 NaN 1 0 Median NaN NaN NaN 0 0 Median 1337700 777180 560500 1046900 573170 473710 0 0 0 0 0 0 0 0 0 290810 204010 86797 0 0 0 16647 3306 17368 86557;86558 87864 87864 1 IVGYVLAK SWPQLSYIAEDENGKIVGYVLAKMEEDPDD AEDENGKIVGYVLAKMEEDPDDVPHGHITS K I V A K M 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 8 0 861.53239 P41227;F8W808;A8MWP7;Q9BSU3 P41227 52 59 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 2 0.005254 76.847 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1.2525 1.1184 18.831 8 Median 1.3284 1.2055 NaN 1 0 Median 1.1968 1.0048 NaN 1 0 Median 1.3262 1.2658 7.7781 2 0 Median 1.2215 1.0173 3.6741 2 0 Median NaN NaN NaN 0 0 Median 1.2478 1.0311 40.528 2 0 Median 62385000 26959000 35426000 29489000 13480000 16009000 15102000 5735300 9366400 10274000 4402200 5872000 6603500 2891800 3711700 0 0 0 915860 449450 466410 16648 2298 17369 86559;86560;86561;86562;86563;86564;86565;86566 87865;87866;87867;87868;87869;87870;87871;87872 87865 8 IVHAFDMEDLGDK NKAMINLHIQKDNPKIVHAFDMEDLGDKAV PKIVHAFDMEDLGDKAVYCRCWRSKKFPFC K I V D K A 1 0 0 3 0 0 1 1 1 1 1 1 1 1 0 0 0 0 0 1 0 0 13 0 1488.6919 Q9NZ45 Q9NZ45 56 68 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 2;3 0.0004217 51.875 By MS/MS By MS/MS By matching 1 2 1 1.0221 0.97387 20.453 4 Median 1.0225 0.95319 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0571 1.0301 4.9 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82307 0.67388 NaN 1 0 Median 10079000 4740100 5338600 1633600 800900 832730 0 0 0 7614600 3541100 4073400 0 0 0 0 0 0 830490 398090 432400 16649 4184 17370 86567;86568;86569;86570 87873;87874;87875;87876 87875 4 IVHDYKDIFK QEWYKKMLDKAVSERIVHDYKDIFKQATED AVSERIVHDYKDIFKQATEDRLTSAKELPY R I V F K Q 0 0 0 2 0 0 0 0 1 2 0 2 0 1 0 0 0 0 1 1 0 0 10 1 1276.6816 Q09472 Q09472 1479 1488 EP300 Histone acetyltransferase p300 yes yes 3 0.0022202 48.44 By MS/MS 1 1.3113 1.5153 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3113 1.5153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6839000 2941400 3897600 0 0 0 0 0 0 6839000 2941400 3897600 0 0 0 0 0 0 0 0 0 16650 2748 17371 86571 87877;87878 87877 2 IVHELNTTVPTASFAGK MWQELLKVMRTIDDRIVHELNTTVPTASFA HELNTTVPTASFAGKIDASQTCKQLYESLM R I V G K I 2 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 3 0 0 2 0 0 17 0 1783.9468 C9JQ41;H7C525;Q4VC31 C9JQ41 16 32 CCDC58 Coiled-coil domain-containing protein 58 yes no 2;3 2.9872E-18 170.07 By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 1.1848 0.99897 16.729 11 Median 0.95502 0.8978 23.516 4 0 Median 1.2087 1.0175 2.4389 4 0 Median 1.1902 1.1345 17.996 2 1 Median 0.97919 0.80679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 215480000 101710000 113770000 88042000 44482000 43559000 85307000 37046000 48261000 41622000 19932000 21690000 512710 253860 258850 0 0 0 0 0 0 16651 716 17372 86572;86573;86574;86575;86576;86577;86578;86579;86580;86581;86582 87879;87880;87881;87882;87883;87884;87885;87886;87887;87888;87889 87887 11 IVIDFDSINSRPSQK MAGVTFRKFIPKCSKIVIDFDSINSRPSQK IVIDFDSINSRPSQKLQ_____________ K I V Q K L 0 1 1 2 0 1 0 0 0 3 0 1 0 1 1 3 0 0 0 1 0 0 15 1 1717.8999 P32321 P32321 162 176 DCTD Deoxycytidylate deaminase yes yes 3 0.00010847 64.675 By MS/MS By matching 1 1 1.0572 1.1168 12.135 2 Median 1.2324 1.2169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90685 1.025 NaN 1 0 Median NaN NaN NaN 0 0 Median 14154000 6037800 8116200 10366000 4039000 6327400 0 0 0 0 0 0 0 0 0 3787700 1998900 1788800 0 0 0 16652 2217 17373 86583;86584 87890;87891 87891 2 IVIFTQGR KKTQALPKMNSKRQRIVIFTQGRDDTIMAT MNSKRQRIVIFTQGRDDTIMATESEVTAFA R I V G R D 0 1 0 0 0 1 0 1 0 2 0 0 0 1 0 0 1 0 0 1 0 0 8 0 932.54435 P55263 P55263 278 285 ADK Adenosine kinase yes yes 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1626 1.0734 10.819 4 Median 1.0088 1.0044 NaN 1 0 Median 1.1611 1.0122 NaN 1 0 Median 1.1642 1.2615 NaN 1 0 Median 1.3487 1.1382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31146000 14510000 16635000 9869900 4922700 4947200 16296000 7539100 8756800 4650600 1919100 2731600 329230 129680 199550 0 0 0 0 0 0 16653 2497 17374 86585;86586;86587;86588 87892;87893;87894;87895;87896 87892 5 IVIGLFGK KVFFDVRIGDKDVGRIVIGLFGKVVPKTVE GDKDVGRIVIGLFGKVVPKTVENFVALATG R I V G K V 0 0 0 0 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 1 0 0 8 0 845.53747 P45877 P45877 54 61 PPIC Peptidyl-prolyl cis-trans isomerase C yes yes 2 0.060654 32.47 By MS/MS 1 0.85379 0.80785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85379 0.80785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1016900 456070 560820 0 0 0 0 0 0 1016900 456070 560820 0 0 0 0 0 0 0 0 0 16654 2329 17375 86589 87897 87897 1 IVIGYQSHADTATK HIGRVYKERLGLPPKIVIGYQSHADTATKS KIVIGYQSHADTATKSGSTTKNRFVV____ K I V T K S 2 0 0 1 0 1 0 1 1 2 0 1 0 0 0 1 2 0 1 1 0 0 14 0 1502.7729 D6RBW1;P06730 D6RBW1 221 234 EIF4E Eukaryotic translation initiation factor 4E yes no 2;3 5.0227E-09 120.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 3 2 2 1 1.2503 1.0735 27.218 19 Median 1.1646 1.0784 4.6525 5 0 Median 1.3468 1.1237 7.7351 6 0 Median 1.1341 1.0594 5.8065 3 0 Plateau 1.2081 1.0017 7.4208 2 0 Median 2.2845 2.3802 12.355 2 0 Median 1.0081 0.82052 NaN 1 0 Median 289850000 125530000 164320000 155210000 68491000 86720000 73574000 29715000 43859000 39289000 17511000 21778000 16788000 7764200 9024200 4178900 1662900 2516100 804540 382370 422170 16655 818 17376 86590;86591;86592;86593;86594;86595;86596;86597;86598;86599;86600;86601;86602;86603;86604;86605;86606;86607;86608 87898;87899;87900;87901;87902;87903;87904;87905;87906;87907;87908;87909;87910;87911;87912;87913;87914;87915;87916;87917;87918;87919;87920;87921;87922;87923;87924;87925;87926 87926 29 IVILDEADSMTSAAQAALR VSGSRSDGKPCPPFKIVILDEADSMTSAAQ DEADSMTSAAQAALRRTMEKESKTTRFCLI K I V L R R 5 1 0 2 0 1 1 0 0 2 2 0 1 0 0 2 1 0 0 1 0 0 19 0 1974.0092 P35249;C9JZI1;C9J8M3;C9JTT7 P35249 146 164 RFC4 Replication factor C subunit 4 yes no 2;3 1.2377E-17 132.47 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.0675 0.89917 8.5461 8 Median NaN NaN NaN 0 0 Median 1.0603 0.9067 10.813 3 2 Median 0.855 0.82536 0.25057 2 0 Median 1.1066 0.96723 0.76394 2 0 Median NaN NaN NaN 0 0 Median 1.0748 0.8917 NaN 1 0 Median 10541000 4827100 5713800 0 0 0 2887400 1275500 1611900 3042700 1498900 1543800 4481400 2007600 2473900 0 0 0 129370 45122 84244 16656 2237 17377 86609;86610;86611;86612;86613;86614;86615;86616 87927;87928;87929;87930;87931;87932 87931 6 IVILEYQPSK GGTKDYIVVGSDSGRIVILEYQPSKNMFEK SDSGRIVILEYQPSKNMFEKIHQETFGKSG R I V S K N 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 1 1 0 0 10 0 1188.6754 Q15393;J3QRB2;J3QL37 Q15393 87 96 SF3B3 Splicing factor 3B subunit 3 yes no 2 0.00039551 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 3 1 0.98856 0.92916 33.803 13 Median 0.77513 0.74431 NaN 1 0 Median 0.97722 0.869 6.4482 2 0 Median 1.6124 1.6291 43.202 3 1 Median 0.99891 0.95838 40.532 3 1 Median 0.90086 0.95217 8.7241 3 0 Median 0.98856 0.85065 NaN 1 0 Median 99307000 45323000 53984000 5487000 2975500 2511500 22393000 10426000 11968000 56144000 24635000 31509000 8472200 3779900 4692400 6212800 3213100 2999700 596820 293090 303730 16657 2946 17378 86617;86618;86619;86620;86621;86622;86623;86624;86625;86626;86627;86628;86629 87933;87934;87935;87936;87937;87938;87939;87940;87941;87942;87943;87944;87945 87938 13 IVILPDYLEIAR FDLSEEKFELDEDVKIVILPDYLEIARDGL DVKIVILPDYLEIARDGLGGLPDIVRDRVT K I V A R D 1 1 0 1 0 0 1 0 0 3 2 0 0 0 1 0 0 0 1 1 0 0 12 0 1413.8232 P45974 P45974 122 133 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 3.6707E-06 111.65 By MS/MS By MS/MS By matching By matching 3 4 1 1 1.0512 0.96059 34.454 8 Median 0.85236 0.82138 60.896 3 0 Median 1.0626 0.93148 5.4988 3 0 Median 0.93541 0.99062 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1624 1.2118 NaN 1 0 Median NaN NaN NaN 0 0 Median 43741000 21356000 22386000 12702000 6560500 6141400 30176000 14376000 15799000 645250 338960 306290 0 0 0 218570 79806 138760 0 0 0 16658 2332 17379 86630;86631;86632;86633;86634;86635;86636;86637;86638 87946;87947;87948;87949;87950;87951;87952;87953;87954;87955 87952 10 IVIPNEESVVIYYK GVVEKVKNSEEQYNKIVIPNEESVVIYYKI KIVIPNEESVVIYYKIRQQLAKLGKEIEEY K I V Y K I 0 0 1 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 2 3 0 0 14 0 1664.9025 P42285 P42285 615 628 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.00073957 62.303 By MS/MS By MS/MS By MS/MS 1 2 1 0.95554 1.0036 9.0752 4 Median 1.0582 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86591 0.92656 11.118 2 0 Median NaN NaN NaN 0 0 Median 0.97661 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median 13660000 6943000 6717500 2057500 930240 1127300 0 0 0 9919900 5014500 4905400 0 0 0 1683100 998270 684790 0 0 0 16659 2309 17380 86639;86640;86641;86642 87956;87957;87958;87959;87960;87961 87959 6 IVITGDGDIDHDQALAQAIR KTVKGGISETRIEKRIVITGDGDIDHDQAL DGDIDHDQALAQAIREAREQHPDMSVTRVV R I V I R E 3 1 0 4 0 2 0 2 1 4 1 0 0 0 0 0 1 0 0 1 0 0 20 0 2120.0862 O43491;E9PHY5;E9PK52;E9PII3;Q6ZSX4;Q6R5J7;E9PPC9 O43491 958 977 EPB41L2 Band 4.1-like protein 2 yes no 3 4.9451E-19 127.78 By MS/MS By MS/MS By MS/MS 2 2 1 1.1886 1.1266 90.651 5 Median 0.46783 0.47053 129.63 2 1 Median NaN NaN NaN 0 0 Median 1.4121 1.5315 43.422 2 0 Median 1.1886 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49736000 25075000 24661000 21060000 11604000 9456100 0 0 0 27616000 12962000 14655000 1059600 509210 550340 0 0 0 0 0 0 16660 1573 17381 86643;86644;86645;86646;86647 87962;87963;87964;87965 87964 4 IVIVPSLNPDGR YKKNPAVTQLVDRTRIVIVPSLNPDGRERA RTRIVIVPSLNPDGRERAQEKDCTSKIGQT R I V G R E 0 1 1 1 0 0 0 1 0 2 1 0 0 0 2 1 0 0 0 2 0 0 12 0 1278.7296 O75976 O75976 1030 1041 CPD Carboxypeptidase D yes yes 2 6.3504E-06 98.249 By MS/MS By MS/MS 1 1 0.78043 0.69912 19.746 2 Median 0.64791 0.60801 NaN 1 0 Median 0.94004 0.80388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26846000 15550000 11296000 21998000 13103000 8894800 4847500 2446400 2401100 0 0 0 0 0 0 0 0 0 0 0 0 16661 1714 17382 86648;86649 87966;87967;87968 87966 3 IVIWDFLTR NRWGTLLAVGCNDGRIVIWDFLTRGIAKII GCNDGRIVIWDFLTRGIAKIISAHIHPVCS R I V T R G 0 1 0 1 0 0 0 0 0 2 1 0 0 1 0 0 1 1 0 1 0 0 9 0 1161.6546 Q15291 Q15291 48 56 RBBP5 Retinoblastoma-binding protein 5 yes yes 2 0.0073226 51.854 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1 1.2364 1.1399 12.843 8 Median 1.4685 1.4272 NaN 1 0 Median 1.3768 1.2431 NaN 1 0 Median 0.99515 0.99829 6.5235 2 0 Median 1.3434 1.1331 NaN 1 0 Median 1.0625 1.0744 9.1957 2 0 Median 1.3564 1.1995 NaN 1 0 Median 4457500 2170700 2286900 364940 175050 189890 91236 39237 51998 2849000 1420400 1428600 504530 220820 283710 589770 287460 302310 58039 27685 30354 16662 2939 17383 86650;86651;86652;86653;86654;86655;86656;86657 87969;87970 87969 2 IVIYIDR IGKRHEGKQLYTFGRIVIYIDRGVVFVQGE KQLYTFGRIVIYIDRGVVFVQGEKTWVPTS R I V D R G 0 1 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 7 0 890.52255 Q9UBB9 Q9UBB9 807 813 TFIP11 Tuftelin-interacting protein 11 yes yes 2 0.047302 41.502 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3482 1.2757 5.8863 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2449 1.3337 NaN 1 0 Median 1.5866 1.3151 NaN 1 0 Median 1.1023 1.1737 NaN 1 0 Median 1.4601 1.2374 NaN 1 0 Median 3720500 1726400 1994100 0 0 0 0 0 0 1644100 705260 938840 160820 70458 90359 1768100 895390 872720 147440 55255 92183 16663 4235 17384 86658;86659;86660;86661 87971;87972 87971 2 IVKDSLSDDVVK LQPKPRSGAVEETFRIVKDSLSDDVVKATQ TFRIVKDSLSDDVVKATQAIYLFELSGEDG R I V V K A 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 2 0 0 0 3 0 0 12 1 1316.7187 Q6YN16 Q6YN16 316 327 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 3 0.036871 20.427 By MS/MS 1 1.334 1.2806 NaN 1 Median 1.334 1.2806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5178400 3307200 1871300 5178400 3307200 1871300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16664 3195 17385 86662 87973 87973 1 IVKDVLEGYNGTIFAYGQTSSGK SSTSQEQVYNDCAKKIVKDVLEGYNGTIFA YNGTIFAYGQTSSGKTHTMEGKLHDPEGMG K I V G K T 1 0 1 1 0 1 1 4 0 2 1 2 0 1 0 2 2 0 2 2 0 0 23 1 2446.238 P33176 P33176 69 91 KIF5B Kinesin-1 heavy chain yes yes 3 0.010662 19.975 By MS/MS 1 1.2776 1.3468 NaN 1 Median 1.2776 1.3468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3691700 1565400 2126400 3691700 1565400 2126400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16665 2221 17386 86663 87974 87974 1 IVKEAHEPLAVADAK MEGKINKQLKKVLKKIVKEAHEPLAVADAK IVKEAHEPLAVADAKLGGVIKEKLNLSCIH K I V A K L 4 0 0 1 0 0 2 0 1 1 1 2 0 0 1 0 0 0 0 2 0 0 15 1 1589.8777 Q9Y2X3 Q9Y2X3 79 93 NOP58 Nucleolar protein 58 yes yes 3 0.013357 24.053 By MS/MS 1 0.80852 0.86293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80852 0.86293 NaN 1 0 Median NaN NaN NaN 0 0 Median 9513600 5678000 3835600 0 0 0 0 0 0 0 0 0 0 0 0 9513600 5678000 3835600 0 0 0 16666 4396 17387 86664 87975 87975 1 IVLAAAGGVSHDELLDLAK KDLVDYITTHYKGPRIVLAAAGGVSHDELL AAGGVSHDELLDLAKFHFGDSLCTHKGEIP R I V A K F 4 0 0 2 0 0 1 2 1 1 4 1 0 0 0 1 0 0 0 2 0 0 19 0 1891.0415 O75439;G3V0E4 O75439 239 257 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 1.066E-09 71.176 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7260600 0 7260600 0 0 0 0 0 0 0 0 0 7260600 0 7260600 0 0 0 0 0 0 16667 1673 17388 86665 87976 87976 1 IVLAAQAISR KSELRAAIDRYVQEKIVLAAQAISRFAYQK YVQEKIVLAAQAISRFAYQKISNGDVILVY K I V S R F 3 1 0 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1040.6342 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 309 318 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 0.00036244 98.233 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1961 1.0617 27.531 6 Median 1.1413 1.1013 3.8973 2 0 Median 1.1929 1.0323 NaN 1 0 Median 1.9637 1.9698 NaN 1 0 Median 1.1435 0.96876 11.669 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49355000 21542000 27813000 25500000 11894000 13606000 7389200 3454800 3934400 10666000 3539900 7126000 5799700 2653200 3146500 0 0 0 0 0 0 16668 16 17389 86666;86667;86668;86669;86670;86671 87977;87978;87979;87980;87981;87982;87983 87981 6 IVLAGDHMQLSPFVYSEFAR CETIMPLALATQNTRIVLAGDHMQLSPFVY DHMQLSPFVYSEFARERNLHVSLLDRLYEH R I V A R E 2 1 0 1 0 1 1 1 1 1 2 0 1 2 1 2 0 0 1 2 0 0 20 0 2279.1409 J3QS41;P42694 J3QS41 818 837 HELZ Probable helicase with zinc finger domain yes no 3 5.7156E-05 38.017 By MS/MS By matching 1 1 0.96341 0.9022 6.1579 2 Median 0.94312 0.94235 NaN 1 0 Median 0.98414 0.86375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2739100 1382100 1357000 2179800 1150400 1029400 559320 231670 327650 0 0 0 0 0 0 0 0 0 0 0 0 16669 1355 17390 86672;86673 87984;87985 87985 2 IVLANDPDADR VLTLSFALADKTKARIVLANDPDADRLAVA TKARIVLANDPDADRLAVAEKQDSGEWRVF R I V D R L 2 1 1 3 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 11 0 1197.599 Q96G03 Q96G03 317 327 PGM2 Phosphoglucomutase-2 yes yes 2 0.0001139 131.44 By MS/MS By MS/MS By MS/MS 1 1 1 0.9257 0.8487 8.3875 3 Plateau 0.87233 0.82854 NaN 1 0 Median 0.98234 0.8487 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86846 0.72626 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37303000 17434000 19869000 12038000 6041100 5997300 24207000 10863000 13344000 0 0 0 1057900 529900 528050 0 0 0 0 0 0 16670 3652 17391 86674;86675;86676 87986;87987;87988;87989 87987 4 IVLDNSVFSEHR MTADLPNELIELLEKIVLDNSVFSEHRNLQ LEKIVLDNSVFSEHRNLQNLLILTAIKADR K I V H R N 0 1 1 1 0 0 1 0 1 1 1 0 0 1 0 2 0 0 0 2 0 0 12 0 1414.7205 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 1015 1026 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 5.2175E-53 236.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 6 5 5 2 2 1.2575 1.1138 18.36 26 Median 1.2763 1.2114 10.3 6 0 Median 1.3332 1.104 7.5781 6 0 Median 0.85798 0.94315 29.224 5 1 Median 1.1636 1.0097 14.94 5 1 Median 0.92261 0.95675 21.55 2 1 Median 1.436 1.1858 8.4529 2 0 Median 864460000 390500000 473960000 491860000 215490000 276370000 195580000 82806000 112770000 141460000 75467000 65992000 17590000 7114200 10476000 17075000 9253900 7821100 899500 369920 529580 16671 44 17392 86677;86678;86679;86680;86681;86682;86683;86684;86685;86686;86687;86688;86689;86690;86691;86692;86693;86694;86695;86696;86697;86698;86699;86700;86701;86702 87990;87991;87992;87993;87994;87995;87996;87997;87998;87999;88000;88001;88002;88003;88004;88005;88006;88007;88008;88009;88010;88011;88012;88013;88014;88015;88016;88017;88018;88019;88020;88021;88022;88023;88024;88025;88026;88027;88028 87999 38 IVLDSDAAEYGGHQR YTDYRVGTALPGKFKIVLDSDAAEYGGHQR IVLDSDAAEYGGHQRLDHSTDFFSEAFEHN K I V Q R L 2 1 0 2 0 1 1 2 1 1 1 0 0 0 0 1 0 0 1 1 0 0 15 0 1629.7747 Q04446;E9PGM4 Q04446 648 662 GBE1 1,4-alpha-glucan-branching enzyme yes no 3 1.4273E-05 83.499 By MS/MS By MS/MS By MS/MS 2 1 1 1.0787 1.0321 11.05 4 Median 1.0889 1.0321 0.098151 2 0 Median 1.0002 0.86528 NaN 1 0 Median 1.0714 1.1258 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40578000 18099000 22479000 25037000 11380000 13657000 10964000 4963500 6000500 4577200 1755600 2821600 0 0 0 0 0 0 0 0 0 16672 2711 17393 86703;86704;86705;86706 88029;88030;88031;88032;88033 88031 5 IVLEDGTLHVTEGSGR MECRGSPLVVISQGKIVLEDGTLHVTEGSG VLEDGTLHVTEGSGRYIPRKPFPDFVYKRI K I V G R Y 0 1 0 1 0 0 2 3 1 1 2 0 0 0 0 1 2 0 0 2 0 0 16 0 1681.8635 Q16555;A0A1C7CYX9 Q16555 452 467 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2;3 2.9143E-51 184.87 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 0.83079 0.7939 37.537 7 Median 0.70702 0.6639 47.243 3 1 Median 0.83079 0.71857 NaN 1 0 Median 0.99969 1.0087 33.869 2 1 Median 1.2585 1.0514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138160000 84029000 54129000 99631000 64896000 34735000 12280000 6023300 6257200 23978000 12146000 11832000 2268300 964210 1304100 0 0 0 0 0 0 16673 328 17394 86707;86708;86709;86710;86711;86712;86713 88034;88035;88036;88037;88038;88039;88040;88041;88042 88037 9 IVLGGTTVHNTK ALTVYNLNRTTPGVRIVLGGTTVHNTKSFL GVRIVLGGTTVHNTKSFLEEVLASGLHSRS R I V T K S 0 0 1 0 0 0 0 2 1 1 1 1 0 0 0 0 3 0 0 2 0 0 12 0 1238.6983 A0A087WU65;A0A2R8YE10;Q9NRW7;A0A2R8YD95 A0A087WU65 407 418 VPS45 Vacuolar protein sorting-associated protein 45 yes no 3 0.0029615 40.475 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1872 1.0987 18.456 4 Median 1.2399 1.1985 NaN 1 0 Median 1.2224 1.0457 NaN 1 1 Median 1.1531 1.1544 NaN 1 0 Median 0.92766 0.79642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6845600 3327600 3517900 1950900 908210 1042700 3837400 1833700 2003800 609520 283250 326270 447700 302490 145220 0 0 0 0 0 0 16674 27 17395 86714;86715;86716;86717 88043;88044 88043 2 IVLHPDTEHSK LGELLQQFGELKYVRIVLHPDTEHSKGCAF KYVRIVLHPDTEHSKGCAFAQFMTQEAAQK R I V S K G 0 0 0 1 0 0 1 0 2 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1274.6619 Q9NW13;H7C5G8 Q9NW13 366 376 RBM28 RNA-binding protein 28 yes no 3 0.024194 23.226 By matching By MS/MS By matching 1 2 2 1.0294 0.95814 13.004 4 Median NaN NaN NaN 0 0 Median 1.2605 1.1357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96125 0.95814 12.324 2 0 Median 1.0405 0.87508 NaN 1 0 Median 2135100 944410 1190700 0 0 0 483840 199790 284040 0 0 0 0 0 0 1282400 594330 688090 368830 150300 218540 16675 4145 17396 86718;86719;86720;86721;86722 88045;88046 88045 2 IVLLDESFHPLNELVPLVYVEDPK TDKPIYKPEQTVKFRIVLLDESFHPLNELV PLNELVPLVYVEDPKGNRIAQWQNLEVENG R I V P K G 0 0 1 2 0 0 3 0 1 1 5 1 0 1 3 1 0 0 1 4 0 0 24 0 2777.4891 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 148 171 yes yes 3 0.0055027 26.005 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1818100 1818100 0 0 0 0 1818100 1818100 0 0 0 0 0 0 0 0 0 0 0 0 0 + 16676 734 17397 86723 88047 88047 1 IVLLDSSLEYK DVTHPRMRRYIKNPRIVLLDSSLEYKKGES KNPRIVLLDSSLEYKKGESQTDIEITREED R I V Y K K 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 2 0 0 1 1 0 0 11 0 1278.7071 P49368;B4DUR8;Q5SZX6 P49368 238 248 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00016746 107.15 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 4 2 2 2 1 1.2651 1.1123 23.452 13 Median 1.0267 0.95376 21.955 2 0 Median 1.1682 0.98353 9.8127 4 0 Median 1.414 1.4669 24.058 2 0 Median 1.3002 1.113 0.086418 2 0 Median 1.6142 1.5669 0.29594 2 1 Median 1.2651 1.0593 NaN 1 0 Median 321590000 141920000 179670000 121120000 54651000 66472000 146960000 64564000 82397000 36085000 15519000 20566000 4436000 2027600 2408400 11173000 4327600 6845600 1809600 829070 980530 16677 2379 17398 86724;86725;86726;86727;86728;86729;86730;86731;86732;86733;86734;86735;86736 88048;88049;88050;88051;88052;88053;88054;88055;88056 88054 8 IVLLSANSIR LHHPRATFLGLTNEKIVLLSANSIRATVAT LTNEKIVLLSANSIRATVATENNKVATWVD K I V I R A 1 1 1 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1084.6604 O95071;E7EMW7 O95071 424 433 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.00070879 107.57 By MS/MS By matching 1 1 1.0995 1.0145 17.877 2 Median 0.91028 0.89401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.328 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10036000 5054800 4981100 9969700 5030800 4938900 0 0 0 0 0 0 66233 24056 42177 0 0 0 0 0 0 16678 1744 17399 86737;86738 88057 88057 1 IVLNGIDLK AVIDFKSNGHIYDNRIVLNGIDLKAFLDSL HIYDNRIVLNGIDLKAFLDSLPDVKIVKMK R I V L K A 0 0 1 1 0 0 0 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 9 0 983.60153 O15294 O15294 734 742 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.017009 42.109 By matching By matching By MS/MS By matching 1 1 1 1 1.139 1.1477 34.482 4 Median 0.61048 0.65752 NaN 1 0 Median 0.97627 1.0589 NaN 1 0 Median 1.3289 1.4613 NaN 1 0 Median 1.4592 1.2439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9028700 4266600 4762100 1731200 820290 910930 1287000 779360 507640 3632700 1670900 1961800 2377800 996020 1381700 0 0 0 0 0 0 16679 1537 17400 86739;86740;86741;86742 88058;88059 88059 2 IVLNPNKPVVEWHR APQEFMTSHSEAGSRIVLNPNKPVVEWHRE RIVLNPNKPVVEWHREGISFHFTPVLVCKD R I V H R E 0 1 2 0 0 0 1 0 1 1 1 1 0 0 2 0 0 1 0 3 0 0 14 1 1699.9522 Q9BRR6 Q9BRR6 444 457 ADPGK ADP-dependent glucokinase yes yes 4 0.00084731 40.552 By MS/MS By matching 1 1 0.8785 0.83847 1.4317 2 Median 0.83091 0.83003 NaN 1 0 Median 0.92881 0.84701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4969600 2702700 2266900 4305200 2400100 1905100 664440 302650 361790 0 0 0 0 0 0 0 0 0 0 0 0 16680 3801 17401 86743;86744 88060 88060 1 IVLNSIEQYQAHVSGFK TDFPAGKGYPCKTCKIVLNSIEQYQAHVSG LNSIEQYQAHVSGFKHKNQSPKTVASSLGQ K I V F K H 1 0 1 0 0 2 1 1 1 2 1 1 0 1 0 2 0 0 1 2 0 0 17 0 1932.0105 D6RJ07;Q9UL40;B7Z4J8;B7Z4N4 D6RJ07 262 278 ZNF346 Zinc finger protein 346 yes no 3 3.4334E-06 68.257 By MS/MS By matching By MS/MS 2 1 1 1.0507 1.0107 3.7883 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0507 1.0107 1.2225 2 2 Median 1.2365 1.0579 NaN 1 0 Median 0.96796 0.96576 NaN 1 0 Median NaN NaN NaN 0 0 Median 24440000 11804000 12636000 0 0 0 0 0 0 18487000 9025100 9462200 196530 85716 110810 5755800 2693200 3062600 0 0 0 16681 829 17402 86745;86746;86747;86748 88061;88062;88063 88062 3 IVLQGNQLAALTQAK PQGHRHVVLGSLPGKIVLQGNQLAALTQAK IVLQGNQLAALTQAKNAQGQPAKVVTIQLQ K I V A K N 3 0 1 0 0 3 0 1 0 1 3 1 0 0 0 0 1 0 0 1 0 0 15 0 1566.9093 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4;G3V2T9 Q9HCK8 314 328 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 2.67E-06 91.855 By MS/MS By matching By matching 2 2 1 1.0605 1.0374 6.9785 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99014 1.0786 9.7647 2 0 Median 1.105 1.0088 3.948 2 0 Median 1.0718 1.1187 NaN 1 0 Median NaN NaN NaN 0 0 Median 18567000 9273600 9293500 0 0 0 0 0 0 16720000 8387900 8332300 897160 442010 455150 949750 443670 506080 0 0 0 16682 4030 17403 86749;86750;86751;86752;86753 88064;88065;88066;88067 88066 4 IVLQIDNAR DLRAQIFANTVDNARIVLQIDNARLAADDF TVDNARIVLQIDNARLAADDFRVKYETELA R I V A R L 1 1 1 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1040.5978 CON__P05784;CON__P08727;P08727;C9JM50;CON__P19001;P05783;F8VZY9 P05783 150 158 KRT19;KRT18 Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18 no no 2 4.9457E-07 163.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 10 8 8 14 1.2523 1.125 24.694 51 Median 1.1918 1.1388 23.922 6 1 Median 1.4117 1.1707 16.892 5 0 Median 1.2076 1.1845 23.565 10 2 Median 1.2446 1.0211 25.786 8 1 Median 1.3823 1.3857 6.7871 8 0 Median 1.2032 0.99929 20.831 14 0 Median 7430800000 3298100000 4132700000 640340000 280480000 359860000 272300000 104760000 167540000 3088400000 1420000000 1668400000 1410700000 628050000 782690000 979750000 405970000 573780000 1039300000 458870000 580420000 + 16683 1869;752;749;760 17404 86754;86755;86756;86757;86758;86759;86760;86761;86762;86763;86764;86765;86766;86767;86768;86769;86770;86771;86772;86773;86774;86775;86776;86777;86778;86779;86780;86781;86782;86783;86784;86785;86786;86787;86788;86789;86790;86791;86792;86793;86794;86795;86796;86797;86798;86799;86800;86801;86802;86803;86804 88068;88069;88070;88071;88072;88073;88074;88075;88076;88077;88078;88079;88080;88081;88082;88083;88084;88085;88086;88087;88088;88089;88090;88091;88092;88093;88094;88095;88096;88097;88098;88099;88100;88101;88102;88103;88104;88105;88106;88107;88108;88109;88110;88111;88112;88113;88114;88115;88116;88117;88118;88119;88120;88121;88122;88123;88124;88125;88126;88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142 88113 75 IVLQKYHTINGHNAEVR GFGFVTFDDHDPVDKIVLQKYHTINGHNAE LQKYHTINGHNAEVRKALSRQEMQEVQSSR K I V V R K 1 1 2 0 0 1 1 1 2 2 1 1 0 0 0 0 1 0 1 2 0 0 17 1 1991.0701 P22626;A0A087WUI2 P22626 169 185 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 4 0.015277 20.939 By matching By MS/MS 1 1 0.71303 0.70858 34.022 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82623 0.9013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61534 0.55707 NaN 1 0 Median 4261000 2344700 1916200 0 0 0 0 0 0 2901200 1569000 1332200 0 0 0 0 0 0 1359800 775710 584080 16684 2103 17405 86805;86806 88143 88143 1 IVLVDDSIVR AKKFGVLSDNFKGKRIVLVDDSIVRGNTIS FKGKRIVLVDDSIVRGNTISPIIKLLKESG R I V V R G 0 1 0 2 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 3 0 0 10 0 1127.655 Q06203 Q06203 385 394 PPAT Amidophosphoribosyltransferase yes yes 2 0.00040727 76.827 By MS/MS By matching By MS/MS By matching 3 1 1 1 1.233 1.1321 15.925 6 Median 1.1642 1.1168 2.1469 3 2 Median 1.2862 1.1309 NaN 1 0 Median 1.5712 1.6507 NaN 1 1 Median 1.4659 1.2883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27833000 12797000 15036000 24648000 11436000 13212000 625790 301950 323840 2347200 969580 1377600 212770 89565 123200 0 0 0 0 0 0 16685 2722 17406 86807;86808;86809;86810;86811;86812 88144;88145;88146;88147;88148 88147 5 IVMEAIQQASVAK TALQADIKLPGIPIKIVMEAIQQASVAKKE IKIVMEAIQQASVAKKEILQIMNKTISKPR K I V A K K 3 0 0 0 0 2 1 0 0 2 0 1 1 0 0 1 0 0 0 2 0 0 13 0 1386.7541 Q8TCS8 Q8TCS8 570 582 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 5.735E-07 110.39 By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1.2172 1.1415 15.861 6 Median 0.9554 0.90888 12.097 2 0 Median 1.4748 1.2997 NaN 1 0 Median 1.1398 1.1581 NaN 1 0 Median 1.3422 1.1626 4.6286 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35494000 14789000 20706000 9845000 4063300 5781800 2704800 1082300 1622500 10676000 4772300 5903800 12269000 4870900 7397600 0 0 0 0 0 0 16686 3467 17407;17408 86813;86814;86815;86816;86817;86818 88149;88150;88151;88152;88153;88154 88150 1739 6 IVMNMNK MGSIISNLPSWIYLKIVMNMNKSTRAHYLK LPSWIYLKIVMNMNKSTRAHYLKKTKKN__ K I V N K S 0 0 2 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 1 0 0 7 0 848.42483 Q53GQ0;A0A1B0GV93 Q53GQ0 293 299 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.015489 71.359 By MS/MS By MS/MS 1 1 1.1313 1.0066 9.8875 2 Median 0.99997 0.93858 NaN 1 0 Median 1.2799 1.0794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8490800 4078200 4412600 6793600 3304200 3489500 1697200 774020 923140 0 0 0 0 0 0 0 0 0 0 0 0 16687 3030 17409 86819;86820 88155;88156 88155 2 IVNFLLQHSAK GYTPLHVGCHYGNIKIVNFLLQHSAKVNAK GNIKIVNFLLQHSAKVNAKTKNGYTPLHQA K I V A K V 1 0 1 0 0 1 0 0 1 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1268.7241 Q12955 Q12955 745 755 ANK3 Ankyrin-3 yes yes 3 0.00078519 50.95 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1317 0.96585 13.158 5 Median 1.001 0.94267 18.269 2 0 Median 1.1498 0.96585 NaN 1 0 Median 0.80608 0.89768 NaN 1 0 Median 1.2735 1.148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10966000 5127400 5838200 3791900 1586600 2205300 1421300 733310 687990 5348000 2654800 2693300 404380 152690 251680 0 0 0 0 0 0 16688 2773 17410 86821;86822;86823;86824;86825 88157;88158 88158 2 IVNHPTMLQDPDVR FLEKRRAALERYLQRIVNHPTMLQDPDVRE RIVNHPTMLQDPDVREFLEKEELPRAVGTQ R I V V R E 0 1 1 2 0 1 0 0 1 1 1 0 1 0 2 0 1 0 0 2 0 0 14 0 1633.8246 Q13596;H0YK42 Q13596 249 262 SNX1 Sorting nexin-1 yes no 3 4.9781E-05 78.814 By MS/MS By MS/MS By MS/MS 2 1 1 0.88868 0.82578 24.737 4 Median 0.79602 0.7737 7.1781 2 0 Median 0.96803 0.83776 NaN 1 0 Median 1.243 1.2864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31052000 15975000 15077000 18875000 9900900 8974400 5938200 3047000 2891300 6238700 3027700 3211100 0 0 0 0 0 0 0 0 0 16689 2829 17411 86826;86827;86828;86829 88159;88160;88161 88159 3 IVNHWASPELR ANNSDPESTFRQNPRIVNHWASPELRQNPG QNPRIVNHWASPELRQNPGVKNEHRPASAL R I V L R Q 1 1 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 1 0 1 0 0 11 0 1320.6939 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 308 318 SEC16A Protein transport protein Sec16A yes no 3 0.00073394 51.998 By MS/MS By matching 2 1 0.60676 0.57774 25.993 3 Median 0.53845 0.52455 13.661 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76553 0.79671 NaN 1 0 Median NaN NaN NaN 0 0 Median 7166100 4172800 2993300 6108900 3689600 2419300 0 0 0 0 0 0 0 0 0 1057200 483290 573940 0 0 0 16690 1513 17412 86830;86831;86832 88162 88162 1 IVNLGSSK KECTIQEKDRDGCPKIVNLGSSKTDLFYER DRDGCPKIVNLGSSKTDLFYERKKYGFKKR K I V S K T 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 8 0 816.47052 Q7RTV0 Q7RTV0 88 95 PHF5A PHD finger-like domain-containing protein 5A yes yes 2 0.012861 54.157 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1.193 1.0398 13.108 6 Median 1.1275 1.0601 NaN 1 0 Median 1.2623 1.0533 NaN 1 0 Median 1.0448 1.0266 NaN 1 0 Median 1.2643 1.024 NaN 1 0 Median 0.95566 1.0227 NaN 1 0 Median 1.6928 1.4267 NaN 1 0 Median 10213000 4751200 5461700 922310 501200 421110 2295500 841000 1454500 2866400 1527000 1339400 2830300 1216000 1614400 1038800 568450 470340 259580 97599 161990 16691 3234 17413 86833;86834;86835;86836;86837;86838 88163;88164;88165;88166;88167 88166 5 IVNSAQTGSFK PTPAEIPRAIQSLKKIVNSAQTGSFKQLTV SLKKIVNSAQTGSFKQLTVKEAVLNGLVAT K I V F K Q 1 0 1 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1150.5982 O75964;E9PN17;A0A3B3ITX4 O75964 56 66 ATP5L ATP synthase subunit g, mitochondrial yes no 2 9.8588E-15 183.47 By MS/MS By MS/MS 2 2 1.2332 1.0838 6.2732 4 Median 1.1648 1.095 9.7246 2 0 Median 1.3253 1.0838 4.7359 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104470000 46764000 57709000 68547000 31992000 36555000 35926000 14772000 21154000 0 0 0 0 0 0 0 0 0 0 0 0 16692 1713 17414 86839;86840;86841;86842 88168;88169;88170;88171;88172;88173;88174;88175;88176 88169 9 IVNSAQTGSFKQLTVK PTPAEIPRAIQSLKKIVNSAQTGSFKQLTV VNSAQTGSFKQLTVKEAVLNGLVATEVLMW K I V V K E 1 0 1 0 0 2 0 1 0 1 1 2 0 1 0 2 2 0 0 2 0 0 16 1 1719.9519 O75964;E9PN17;A0A3B3ITX4 O75964 56 71 ATP5L ATP synthase subunit g, mitochondrial yes no 3 0.014243 22.803 By matching By MS/MS 1 1 1.0464 0.85332 10.218 2 Median 0.8477 0.79384 NaN 1 0 Median 1.2916 0.91726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3078700 1530600 1548100 1692200 979510 712730 1386400 551100 835340 0 0 0 0 0 0 0 0 0 0 0 0 16693 1713 17415 86843;86844 88177 88177 1 IVNSSMELAQTAK FAAENEQMLKPHLHKIVNSSMELAQTAKEP HKIVNSSMELAQTAKEPYNYFLLLRALFRS K I V A K E 2 0 1 0 0 1 1 0 0 1 1 1 1 0 0 2 1 0 0 1 0 0 13 0 1390.7126 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 738 750 TRRAP Transformation/transcription domain-associated protein yes no 2 2.5247E-40 183.33 By MS/MS By MS/MS 2 1 1.3705 1.4608 50.215 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0594 1.1547 33.262 2 1 Median 2.5066 2.4899 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43453000 16177000 27275000 0 0 0 0 0 0 33403000 13905000 19498000 10050000 2272700 7776900 0 0 0 0 0 0 16694 991 17416 86845;86846;86847 88178;88179;88180 88178 3 IVNTPFQVLMNSEK TYKAENLGEVLRGDRIVNTPFQVLMNSEKK RIVNTPFQVLMNSEKKCEVLCSQSNKPVTL R I V E K K 0 0 2 0 0 1 1 0 0 1 1 1 1 1 1 1 1 0 0 2 0 0 14 0 1618.8389 A0A0C4DFM1;Q92544 A0A0C4DFM1 68 81 TM9SF4 Transmembrane 9 superfamily member 4 yes no 2 2.1798E-08 117.98 By MS/MS 2 0.85495 0.85636 2.9633 2 Median 0.85495 0.85636 2.9633 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22535000 11813000 10722000 22535000 11813000 10722000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16695 229 17417 86848;86849 88181;88182 88182 2 IVNTQEQLNHR IAEQLLKANPPGKDRIVNTQEQLNHRWQQF GKDRIVNTQEQLNHRWQQFRRLADGKKAAL R I V H R W 0 1 2 0 0 2 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1350.7004 O15020 O15020 929 939 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.00017441 65.5 By matching By MS/MS By MS/MS 1 1 1 1.0002 0.99248 2.7329 3 Median 1.0002 0.99248 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91961 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1515 0.96645 NaN 1 0 Median 2943200 1436300 1507000 418450 184020 234440 0 0 0 1715800 833460 882300 0 0 0 0 0 0 809020 418790 390230 16696 1512 17418 86850;86851;86852 88183;88184 88183 2 IVNVSSLAHHLGR THLLLEKLKESAPSRIVNVSSLAHHLGRIH SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG R I V G R I 1 1 1 0 0 0 0 1 2 1 2 0 0 0 0 2 0 0 0 2 0 0 13 0 1401.7841 Q8TC12;G3V2G6;H0YIZ8;G3V234;H0YJ46 Q8TC12 172 184 RDH11 Retinol dehydrogenase 11 yes no 3 3.7379E-05 136.96 By MS/MS By matching 1 1 1.2199 1.0841 1.8294 2 Median 1.1455 1.0702 NaN 1 0 Median 1.2993 1.0983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10490000 4477500 6012400 8910700 3769700 5141000 1579100 707730 871410 0 0 0 0 0 0 0 0 0 0 0 0 16697 3464 17419 86853;86854 88185;88186 88186 2 IVPAHVPTPIQPTFGGATHSAFGLK APATAPTPAPASTIKIVPAHVPTPIQPTFG QPTFGGATHSAFGLKATASAFGAPASSQPA K I V L K A 3 0 0 0 0 1 0 3 2 2 1 1 0 2 4 1 3 0 0 2 0 0 25 0 2542.3696 A8CG34;A6NF01 A8CG34 996 1020 POM121C;POM121B Nuclear envelope pore membrane protein POM 121C;Putative nuclear envelope pore membrane protein POM 121B yes no 4 0.019973 13.884 By MS/MS 1 0.58181 0.63075 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58181 0.63075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4128000 2716200 1411800 0 0 0 0 0 0 4128000 2716200 1411800 0 0 0 0 0 0 0 0 0 16698 536 17420 86855 88187 88187 1 IVPEGEWGQFMDALR VKENKLFEHYYQELKIVPEGEWGQFMDALR IVPEGEWGQFMDALREPLPATLRITGYKSH K I V L R E 1 1 0 1 0 1 2 2 0 1 1 0 1 1 1 0 0 1 0 1 0 0 15 0 1746.8399 Q08J23;A0A140T9Y7 Q08J23 57 71 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 0.0071352 33.409 By MS/MS 1 0.99378 0.87211 NaN 1 Median NaN NaN NaN 0 0 Median 0.99378 0.87211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1545800 708700 837080 0 0 0 1545800 708700 837080 0 0 0 0 0 0 0 0 0 0 0 0 16699 2745 17421 86856 88188 88188 1 IVPEWQDYDQEIK NNPMTKEPKLEAAVRIVPEWQDYDQEIKQL VRIVPEWQDYDQEIKQLQIRFQKEKETGAL R I V I K Q 0 0 0 2 0 2 2 0 0 2 0 1 0 0 1 0 0 1 1 1 0 0 13 0 1661.7937 Q9NYU2;H7BZG0 Q9NYU2 1509 1521 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes no 2 2.272E-05 123.79 By MS/MS By matching 1 1 1.0007 0.92475 27.014 2 Median 0.79444 0.76395 NaN 1 0 Median 1.2606 1.1194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26152000 13864000 12288000 22720000 12373000 10347000 3431600 1490800 1940800 0 0 0 0 0 0 0 0 0 0 0 0 16700 4179 17422 86857;86858 88189;88190 88190 2 IVPGQFLAVDPK EKIHQETFGKSGCRRIVPGQFLAVDPKGRA CRRIVPGQFLAVDPKGRAVMISAIEKQKLV R I V P K G 1 0 0 1 0 1 0 1 0 1 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1282.7285 Q15393 Q15393 115 126 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00081714 60.518 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 3 5 1 0.85534 0.77525 16.104 13 Median 0.7378 0.73904 NaN 1 0 Median 0.88647 0.77525 2.3936 3 0 Median 0.78108 0.81107 10.192 3 0 Median 0.85534 0.68066 24.734 5 0 Median 0.66761 0.70327 NaN 1 0 Median NaN NaN NaN 0 0 Median 96070000 51647000 44423000 11321000 6549100 4772200 8261900 4277200 3984600 70100000 37628000 32473000 3331700 1721200 1610600 3055000 1471600 1583300 0 0 0 16701 2946 17423 86859;86860;86861;86862;86863;86864;86865;86866;86867;86868;86869;86870;86871 88191;88192;88193;88194;88195;88196;88197 88195 7 IVPHLLR PELKRDPVSTRVKLKIVPHLLRSRQAAETF VSTRVKLKIVPHLLRSRQAAETFPANIQVV K I V L R S 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 0 0 1 0 0 7 0 846.54396 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 337 343 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.025249 54.525 By MS/MS By MS/MS 1 1 0.97481 0.87009 4.267 2 Median 0.94977 0.89674 NaN 1 0 Median 1.0005 0.84423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8957900 3909800 5048100 6655000 2846800 3808200 2302900 1063000 1239900 0 0 0 0 0 0 0 0 0 0 0 0 16702 3116 17424 86872;86873 88198;88199;88200 88199 3 IVPNVLLEQGK LPNDPMFKLVAQLYKIVPNVLLEQGKAKNP QLYKIVPNVLLEQGKAKNPWPNVDAHSGVL K I V G K A 0 0 1 0 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.7129 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 383 393 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.00011372 128.36 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 4 6 6 4 3 0.98362 0.91024 56.752 28 Median 0.93931 0.91023 127.89 5 1 Median 0.96961 0.80025 26.228 4 0 Median 0.87236 0.82965 6.6484 6 0 Median 1.158 0.97311 15.542 6 0 Median 1.3464 1.333 29.939 4 0 Median 1.0995 0.91355 10.407 3 0 Median 795750000 349330000 446420000 349950000 134250000 215700000 57536000 29482000 28054000 165750000 87532000 78222000 201860000 89102000 112760000 16747000 7015500 9731900 3898000 1943300 1954800 16703 594 17425 86874;86875;86876;86877;86878;86879;86880;86881;86882;86883;86884;86885;86886;86887;86888;86889;86890;86891;86892;86893;86894;86895;86896;86897;86898;86899;86900;86901 88201;88202;88203;88204;88205;88206;88207;88208;88209;88210;88211;88212;88213;88214 88213 14 IVPPWAPPK KQLTNPYGSWRMHTKIVPPWAPPKQPILKT WRMHTKIVPPWAPPKQPILKTVMIPGPQLK K I V P K Q 1 0 0 0 0 0 0 0 0 1 0 1 0 0 4 0 0 1 0 1 0 0 9 0 1003.5855 A0A0G2JMS5;A0A087WU62;A0A087X2D5;Q9BRJ2 A0A0G2JMS5 215 223 MRPL45 39S ribosomal protein L45, mitochondrial yes no 2 0.028744 36.701 By MS/MS By matching 1 1 0.65015 0.58804 19.009 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53735 0.51408 NaN 1 0 Median 0.78664 0.67264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4301100 2819700 1481400 0 0 0 0 0 0 3687300 2427100 1260200 613770 392560 221210 0 0 0 0 0 0 16704 25 17426 86902;86903 88215 88215 1 IVPQPPLQK IDRLTDEGAVHVNDRIVPQPPLQKLSAEKL VHVNDRIVPQPPLQKLSAEKLTREGAFLMD R I V Q K L 0 0 0 0 0 2 0 0 0 1 1 1 0 0 3 0 0 0 0 1 0 0 9 0 1018.6175 O95487 O95487 1139 1147 SEC24B Protein transport protein Sec24B yes yes 2 0.035824 34.808 By MS/MS 1 0.81804 0.71394 NaN 1 Median NaN NaN NaN 0 0 Median 0.81804 0.71394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2756500 1497000 1259500 0 0 0 2756500 1497000 1259500 0 0 0 0 0 0 0 0 0 0 0 0 16705 1778 17427 86904 88216 88216 1 IVPTDMNDQNLEEPSR GQLPKPFAEGPLATRIVPTDMNDQNLEEPS VPTDMNDQNLEEPSRYIDISKCHYLVDLDT R I V S R Y 0 1 2 2 0 1 2 0 0 1 1 0 1 0 2 1 1 0 0 1 0 0 16 0 1856.8574 H0YCW6;A0A087WZ62;Q9H6U8 H0YCW6 96 111 ALG9 Alpha-1,2-mannosyltransferase ALG9 yes no 2 1.2637E-10 114.82 By MS/MS 1 0.40022 0.39465 NaN 1 Median 0.40022 0.39465 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8361700 5763800 2597900 8361700 5763800 2597900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16706 92 17428 86905 88217 88217 1 IVPTVYEDK RLTSNPLASHDYILKIVPTVYEDKSGKQRY HDYILKIVPTVYEDKSGKQRYSYQYTVANK K I V D K S 0 0 0 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 1 2 0 0 9 0 1062.5597 Q969X5 Q969X5 191 199 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 2 0.015941 57.96 By MS/MS 1 7.467 6.7694 NaN 1 Median 7.467 6.7694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42221000 4358300 37863000 42221000 4358300 37863000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16707 3590 17429 86906 88218 88218 1 IVQAEGEAEAAK AQFLVEKAKQEQRQKIVQAEGEAEAAKMLG RQKIVQAEGEAEAAKMLGEALSKNPGYIKL K I V A K M 4 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1214.6143 J3KPX7;Q99623;F5GY37 J3KPX7 225 236 PHB2 Prohibitin-2 yes no 2 3.6707E-06 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1.3582 1.1409 21.468 9 Median 0.84523 0.79232 22.325 2 0 Median 1.3237 1.1157 3.1674 2 0 Median 1.0739 1.0348 NaN 1 0 Median 1.4436 1.2131 NaN 1 0 Median 1.3582 1.3563 NaN 1 0 Median 1.5429 1.272 6.0534 2 0 Median 304820000 127600000 177220000 60685000 29983000 30703000 192230000 75176000 117060000 25174000 12151000 13023000 5696600 2148400 3548200 6243400 2681100 3562300 14789000 5464300 9325200 16708 1313 17430 86907;86908;86909;86910;86911;86912;86913;86914;86915 88219;88220;88221;88222;88223;88224;88225;88226;88227;88228;88229;88230;88231;88232;88233;88234;88235;88236 88226 18 IVQISGNSMPR GMITQHSSNASPINRIVQISGNSMPRGSGS PINRIVQISGNSMPRGSGSGFKPFKGGPPR R I V P R G 0 1 1 0 0 1 0 1 0 2 0 0 1 0 1 2 0 0 0 1 0 0 11 0 1200.6285 Q9NWH9;H7C3F4;H0YKH2 Q9NWH9 1007 1017 SLTM SAFB-like transcription modulator yes no 2 0.00016142 91.867 By MS/MS By MS/MS 1 1 0.62858 0.6686 4.6371 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62806 0.69089 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62909 0.64703 NaN 1 0 Median NaN NaN NaN 0 0 Median 14813000 8594400 6219100 0 0 0 0 0 0 4793200 3036600 1756600 0 0 0 10020000 5557800 4462500 0 0 0 16709 4149 17431 86916;86917 88237;88238;88239 88238 3 IVQLGGSNAQR NPDRVLELLLPIRYRIVQLGGSNAQRDVFN IRYRIVQLGGSNAQRDVFNQLLIHAALNCT R I V Q R D 1 1 1 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1141.6204 Q5R3I4;H7C089 Q5R3I4 405 415 TTC38 Tetratricopeptide repeat protein 38 yes no 2 0.03568 29.473 By MS/MS 1 1.0438 1.0384 NaN 1 Median 1.0438 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1789400 803710 985700 1789400 803710 985700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16710 3070 17432 86918 88240 88240 1 IVQLLGQNEVDYR NEIMSSECHSSVCAKIVQLLGQNEVDYRQK AKIVQLLGQNEVDYRQKQVVILSQDSFYRV K I V Y R Q 0 1 1 1 0 2 1 1 0 1 2 0 0 0 0 0 0 0 1 2 0 0 13 0 1545.8151 A0A2R8Y653;Q9BZX2 A0A2R8Y653 19 31 UCK2 Uridine-cytidine kinase 2 yes no 2 2.1898E-06 119.16 By MS/MS By matching By matching 1 1 1 1.2802 1.2211 67.414 3 Median 1.2802 1.2211 NaN 1 0 Median 0.74945 0.64762 NaN 1 0 Median 2.2435 2.4919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6494400 2548100 3946300 3903500 1293200 2610300 257910 127640 130270 2333000 1127300 1205800 0 0 0 0 0 0 0 0 0 16711 374 17433 86919;86920;86921 88241 88241 1 IVQMTEAEVR LITRLLEVRGCRPGKIVQMTEAEVRGLCIK CRPGKIVQMTEAEVRGLCIKSREIFLSQPI K I V V R G 1 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 10 0 1174.6016 P62140;C9J9S3;C9JP48 P62140 26 35 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase yes no 2 2.749E-05 144.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 5 1 2 1.1389 0.976 11.246 14 Median 0.93201 0.87212 NaN 1 0 Median 1.2509 1.0496 10.609 2 0 Median 0.99217 0.98215 16.02 3 0 Median 1.1154 0.96999 5.2751 5 2 Median 1.1072 1.1762 NaN 1 0 Median 1.2341 1.0354 10.281 2 0 Median 168130000 80742000 87389000 19909000 10002000 9906700 18686000 8175700 10511000 79080000 38276000 40803000 41824000 19996000 21828000 1272200 490460 781780 7360300 3801900 3558300 16712 2570 17434;17435 86922;86923;86924;86925;86926;86927;86928;86929;86930;86931;86932;86933;86934;86935 88242;88243;88244;88245;88246;88247;88248;88249;88250;88251;88252;88253;88254;88255;88256;88257;88258 88245 1242 17 IVQQVTGILK GTIHIQVTSDVLEQRIVQQVTGILKDAGVN VLEQRIVQQVTGILKDAGVNNLTIQVEKEA R I V L K D 0 0 0 0 0 2 0 1 0 2 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1097.6808 Q9BY48;Q8TAD4 Q9BY48 301 310 SLC30A5 Zinc transporter 5 yes no 2 0.0004139 88.819 By matching By MS/MS 1 1 1.4506 1.3483 6.743 2 Median 1.298 1.2855 NaN 1 0 Median 1.6212 1.4141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7430800 2920100 4510700 2552700 1029700 1523000 4878100 1890400 2987700 0 0 0 0 0 0 0 0 0 0 0 0 16713 3450 17436 86936;86937 88259 88259 1 IVQVALNGLENILR CIKPLCDLLTVMDSKIVQVALNGLENILRL KIVQVALNGLENILRLGEQEAKRNGTGINP K I V L R L 1 1 2 0 0 1 1 1 0 2 3 0 0 0 0 0 0 0 0 2 0 0 14 0 1550.9144 P52294;O60684;O15131 P52294 439 452 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 2 1.0244E-05 152.62 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.181 1.1184 23.039 7 Median 1.3287 1.2767 18.728 2 0 Median 1.1146 0.96449 23.592 3 0 Median NaN NaN NaN 0 0 Median 1.5158 1.3396 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1559 0.93853 NaN 1 0 Median 27166000 12398000 14768000 16033000 7195000 8838400 9719600 4562000 5157600 0 0 0 91272 42806 48467 0 0 0 1321800 597980 723830 16714 2449;1626;1524 17437 86938;86939;86940;86941;86942;86943;86944 88260;88261;88262 88260 3 IVRGDQPAASGDSDDDEPPPLPR LNLLLLGLCIFLLYKIVRGDQPAASGDSDD ASGDSDDDEPPPLPRLKRRDFTPAELRRFD K I V P R L 2 2 0 5 0 1 1 2 0 1 1 0 0 0 5 2 0 0 0 1 0 0 23 1 2403.1302 O00264 O00264 45 67 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 3 6.9517E-29 111.97 By MS/MS 1 0.59368 0.50419 NaN 1 Median NaN NaN NaN 0 0 Median 0.59368 0.50419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3571200 1974600 1596500 0 0 0 3571200 1974600 1596500 0 0 0 0 0 0 0 0 0 0 0 0 16715 1451 17438 86945 88263;88264 88263 2 IVRPWAEGTEEGAR KPPPSPQPTGKIEIKIVRPWAEGTEEGARW KIVRPWAEGTEEGARWLTDEDTRNLKEIFF K I V A R W 2 2 0 0 0 0 3 2 0 1 0 0 0 0 1 0 1 1 0 1 0 0 14 1 1569.79 B4E321;Q13438 B4E321 334 347 OS9 Protein OS-9 yes no 3 0.00022579 63.292 By MS/MS 1 0.83277 0.85384 NaN 1 Median 0.83277 0.85384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007300 2220600 1786700 4007300 2220600 1786700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16716 615 17439 86946 88265;88266 88266 2 IVSAQSLAEDDVE VFQMLLTKLPTISQRIVSAQSLAEDDVE__ QRIVSAQSLAEDDVE_______________ R I V V E - 2 0 0 2 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 2 0 0 13 0 1374.6515 Q15388 Q15388 133 145 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 2 0.036835 43.282 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20068000 0 0 20068000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16717 2945 17440 86947 88267 88267 1 IVSGEAESVEVTPENLQDFVGKPVFTVER LQKQVEKVLRKSAYKIVSGEAESVEVTPEN NLQDFVGKPVFTVERMYDVTPPGVVMGLAW K I V E R M 1 1 1 1 0 1 5 2 0 1 1 1 0 2 2 2 2 0 0 6 0 0 29 1 3174.6085 K7EKE6;P36776;K7EJE8;K7ERR6 K7EKE6 613 641 LONP1 Lon protease homolog, mitochondrial yes no 3 0.015336 16.014 By MS/MS By matching By matching By matching 1 1 1 1 0.5993 0.59993 92.813 4 Median 0.55842 0.58032 NaN 1 0 Median 0.64318 0.6202 NaN 1 0 Median 0.13028 0.13745 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.128 1.2558 NaN 1 0 Median NaN NaN NaN 0 0 Median 5938200 3957300 1980900 2988700 1659000 1329700 426280 229670 196610 1950800 1795700 155050 0 0 0 572460 272920 299530 0 0 0 16718 1370 17441 86948;86949;86950;86951 88268;88269 88269 2 IVSGIIHHTQAPK FQFCLRYTKEEEVKRIVSGIIHHTQAPKLL KRIVSGIIHHTQAPKLLKRLFLFSYATAAQ R I V P K L 1 0 0 0 0 1 0 1 2 3 0 1 0 0 1 1 1 0 0 1 0 0 13 0 1399.7936 Q9C0I1 Q9C0I1 164 176 MTMR12 Myotubularin-related protein 12 yes yes 3 0.00090416 44.616 By MS/MS By MS/MS 1 1 0.88984 0.78156 7.9788 2 Median NaN NaN NaN 0 0 Median 0.83282 0.73869 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95075 0.82693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2711700 1532500 1179200 0 0 0 1714300 995190 719140 0 0 0 997420 537340 460080 0 0 0 0 0 0 16719 3906 17442 86952;86953 88270;88271;88272 88270 3 IVSGIITPIHEQWEK DFHRTYKNSEELRSRIVSGIITPIHEQWEK IVSGIITPIHEQWEKANVSSPHREFPPATA R I V E K A 0 0 0 0 0 1 2 1 1 4 0 1 0 0 1 1 1 1 0 1 0 0 15 0 1748.9461 Q5QPM7;Q92530;Q5QPM9 Q5QPM7 134 148 PSMF1 Proteasome inhibitor PI31 subunit yes no 3 0.0087775 34.954 By MS/MS 1 0.56297 0.52296 NaN 1 Median 0.56297 0.52296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19190000 12788000 6402300 19190000 12788000 6402300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16720 3069 17443 86954 88273 88273 1 IVSGKDYNVTANSK MMDLQHGSLFLRTPKIVSGKDYNVTANSKL KIVSGKDYNVTANSKLVIITAGARQQEGES K I V S K L 1 0 2 1 0 0 0 1 0 1 0 2 0 0 0 2 1 0 1 2 0 0 14 1 1494.7678 P00338;F5GYU2;F5GXY2;F5GXH2 P00338 77 90 LDHA L-lactate dehydrogenase A chain yes no 2;3 4.6082E-05 90.685 By MS/MS By matching By MS/MS 5 1 1 1.0833 0.97565 57.519 7 Median 1.1774 1.1392 70.04 5 0 Median 1.0833 0.97565 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0226 0.89788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55400000 22680000 32720000 47756000 19057000 28700000 6104400 2925400 3179000 0 0 0 1539200 697920 841270 0 0 0 0 0 0 16721 1813 17444 86955;86956;86957;86958;86959;86960;86961 88274;88275;88276;88277 88275 4 IVSITER ATIYPTEEELQAVQKIVSITERALKLVSDS EELQAVQKIVSITERALKLVSDSLSEHEKN K I V E R A 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 1 0 0 1 0 0 7 0 816.47052 Q96KR1;H0Y8W1 Q96KR1 747 753 ZFR Zinc finger RNA-binding protein yes no 2 0.0018569 111.73 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 2 1 2 1 1.2116 1.1863 32.952 9 Median 1.6636 1.6506 NaN 1 0 Median 1.6051 1.3734 38.343 2 0 Median 1.2419 1.3676 29.23 2 0 Median 1.0968 0.9369 NaN 1 0 Median 1.1663 1.2273 4.8101 2 0 Median 0.76158 0.63782 NaN 1 0 Median 21365000 8558000 12807000 1454800 605520 849280 5545100 2133400 3411700 6953700 3144900 3808800 840800 361940 478860 5584900 1871300 3713700 985820 440890 544940 16722 3697 17445 86962;86963;86964;86965;86966;86967;86968;86969;86970 88278;88279;88280 88278 3 IVSLEPAYPPVFYLNK DADEPNTLNSKISYRIVSLEPAYPPVFYLN VSLEPAYPPVFYLNKDTGEIYTTSVTLDRE R I V N K D 1 0 1 0 0 0 1 0 0 1 2 1 0 1 3 1 0 0 2 2 0 0 16 0 1849.0026 Q14126;J3KSI6 Q14126 200 215 DSG2 Desmoglein-2 yes no 2 0.00013101 51.092 By MS/MS By MS/MS By matching 2 3 1 0.54899 0.54802 19.995 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44158 0.4658 39.482 2 0 Median NaN NaN NaN 0 0 Median 0.55061 0.57692 4.3926 3 0 Plateau 0.58557 0.49892 NaN 1 0 Median 10932000 6826900 4105100 0 0 0 0 0 0 1658700 1091200 567480 0 0 0 9076200 5613900 3462400 197070 121780 75284 16723 2855 17446 86971;86972;86973;86974;86975;86976 88281;88282;88283;88284;88285 88285 5 IVSLFAEHNDLQYAAPGGLIGVGTK KDSEGKLMCKPIFSKIVSLFAEHNDLQYAA LQYAAPGGLIGVGTKIDPTLCRADRMVGQV K I V T K I 3 0 1 1 0 1 1 4 1 2 3 1 0 1 1 1 1 0 1 2 0 0 25 0 2569.354 P41091;Q2VIR3 P41091 318 342 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 8.0524E-20 84.674 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1 1.0402 0.9476 9.2245 9 Median 0.9629 0.90211 NaN 1 0 Median 0.91813 0.78399 NaN 1 0 Median 1.0402 1.0169 4.1432 3 0 Median 1.0465 0.88465 4.0015 3 0 Median NaN NaN NaN 0 0 Median 1.1255 0.95911 NaN 1 0 Median 76906000 35155000 41751000 7202000 3289200 3912800 3118900 1492300 1626600 46014000 20670000 25343000 19945000 9461700 10484000 0 0 0 625830 241370 384450 16724 2295 17447 86977;86978;86979;86980;86981;86982;86983;86984;86985 88286;88287;88288;88289;88290;88291;88292;88293;88294;88295 88290 10 IVSLMWDPVTPYR YLKQSLSFSTCGKSKIVSLMWDPVTPYRLH SKIVSLMWDPVTPYRLHVLCQGWHYLAYDW K I V Y R L 0 1 0 1 0 0 0 0 0 1 1 0 1 0 2 1 1 1 1 2 0 0 13 0 1575.8119 O95163 O95163 346 358 IKBKAP Elongator complex protein 1 yes yes 2 0.00068899 67.563 By MS/MS 1 0.8506 0.85453 NaN 1 Median 0.8506 0.85453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1462400 741410 721000 1462400 741410 721000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16725 1749 17448 86986 88296;88297 88296 2 IVSLPECFNSPYGAK RACSFIREAATQGAKIVSLPECFNSPYGAK IVSLPECFNSPYGAKYFPEYAEKIPGESTQ K I V A K Y 1 0 1 0 1 0 1 1 0 1 1 1 0 1 2 2 0 0 1 1 0 0 15 0 1680.8181 Q9NQR4;H7C579;F8WF70 Q9NQR4 38 52 NIT2 Omega-amidase NIT2 yes no 2 0.00055323 59.426 By MS/MS 2 0.84651 0.82176 4.4253 2 Median 0.84651 0.82176 4.4253 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6122600 3353200 2769500 6122600 3353200 2769500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16726 4064 17449 86987;86988 88298;88299 88298 2 IVSMTLDKEYDVAVQAIK LNSKLELFTSRFKDRIVSMTLDKEYDVAVQ MTLDKEYDVAVQAIKLLTLVLQSSEEVLTA R I V I K L 2 0 0 2 0 1 1 0 0 2 1 2 1 0 0 1 1 0 1 3 0 0 18 1 2022.0707 Q8N3U4;B1AMT4 Q8N3U4 375 392 STAG2 Cohesin subunit SA-2 yes no 3 5.8091E-05 56.851 By MS/MS By MS/MS 2 1 0.83331 0.95782 9.0915 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83405 0.95836 0.07934 2 2 Median NaN NaN NaN 0 0 Median 0.7314 0.81873 NaN 1 0 Median NaN NaN NaN 0 0 Median 13764000 7190200 6574200 0 0 0 0 0 0 11306000 5892100 5413900 0 0 0 2458300 1298000 1160200 0 0 0 16727 3369 17450 86989;86990;86991 88300;88301;88302;88303 88301 4 IVSQLLTLMDGLK IAPKREKTHGEVERRIVSQLLTLMDGLKQR RRIVSQLLTLMDGLKQRAHVIVMAATNRPN R I V L K Q 0 0 0 1 0 1 0 1 0 1 4 1 1 0 0 1 1 0 0 1 0 0 13 0 1429.8214 P55072 P55072 324 336 VCP Transitional endoplasmic reticulum ATPase yes yes 2 3.2798E-10 176.48 By MS/MS By MS/MS By matching By matching By MS/MS 8 8 1 2 1 1.2195 1.1346 13.407 20 Median 1.1704 1.1433 9.1951 8 0 Median 1.2156 1.0692 12.534 8 0 Median 1.4314 1.5223 NaN 1 0 Median 1.4322 1.2697 22.509 2 0 Median 1.3004 1.3447 NaN 1 0 Median NaN NaN NaN 0 0 Median 128620000 57457000 71161000 44718000 19802000 24917000 77316000 34907000 42409000 2026000 796880 1229200 422630 134240 288400 4134100 1816700 2317500 0 0 0 16728 2494 17451;17452 86992;86993;86994;86995;86996;86997;86998;86999;87000;87001;87002;87003;87004;87005;87006;87007;87008;87009;87010;87011 88304;88305;88306;88307;88308;88309;88310;88311;88312;88313;88314;88315;88316;88317;88318 88316 1177 15 IVSQPQPAR QQPQQKAGLLQPPVRIVSQPQPARRLDPPS LQPPVRIVSQPQPARRLDPPSRFSGRNDRG R I V A R R 1 1 0 0 0 2 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 994.55598 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 285 293 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0067678 53.554 By MS/MS 2 0.52861 0.53924 39.716 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52861 0.53924 39.716 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579600 952900 626750 0 0 0 0 0 0 1579600 952900 626750 0 0 0 0 0 0 0 0 0 16729 3331 17453 87012;87013 88319;88320 88319 2 IVSRPEELR RKTDNNRIARACGARIVSRPEELREDDVGT RACGARIVSRPEELREDDVGTGAGLLEIKK R I V L R E 0 2 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 9 1 1097.6193 P49368;B4DUR8 P49368 331 339 CCT3 T-complex protein 1 subunit gamma yes no 2 0.014128 68.224 By MS/MS By matching By matching 1 2 1 1.0116 0.99238 17.826 4 Median NaN NaN NaN 0 0 Median 1.3971 1.2689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79064 0.92207 15.441 2 0 Median 1.1748 0.95759 NaN 1 0 Median 9951900 4930000 5021800 0 0 0 4669000 2019500 2649400 0 0 0 0 0 0 4242400 2398500 1843800 1040500 511950 528560 16730 2379 17454 87014;87015;87016;87017 88321;88322 88321 2 IVSRPEELREDDVGTGAGLLEIK RKTDNNRIARACGARIVSRPEELREDDVGT REDDVGTGAGLLEIKKIGDEYFTFITDCKD R I V I K K 1 2 0 2 0 0 4 3 0 2 3 1 0 0 1 1 1 0 0 2 0 0 23 2 2495.3231 P49368;B4DUR8 P49368 331 353 CCT3 T-complex protein 1 subunit gamma yes no 3;4 3.5537E-18 82.504 By MS/MS By matching By MS/MS By matching 3 2 2 1 0.93212 1.0116 24.584 8 Median 0.84221 0.85022 23.574 3 0 Median 0.99297 1.0993 14.645 2 0 Median 0.98751 1.0499 2.3511 2 0 Median 1.315 1.1994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107920000 56665000 51251000 72043000 39861000 32182000 3641000 1714000 1927000 31279000 14699000 16580000 953410 391130 562280 0 0 0 0 0 0 16731 2379 17455 87018;87019;87020;87021;87022;87023;87024;87025 88323;88324;88325;88326;88327;88328;88329 88324 7 IVSSSDVGHDEYSTQSLVK ADADDIDAWMLDILKIVSSSDVGHDEYSTQ SDVGHDEYSTQSLVKKHKDVAEEIANYRPT K I V V K K 0 0 0 2 0 1 1 1 1 1 1 1 0 0 0 5 1 0 1 3 0 0 19 0 2049.9855 Q01082;A0A087WUZ3 Q01082 766 784 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.3431E-30 187.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 2 3 1.1259 1.0956 16.154 15 Median 1.3393 1.2844 2.7725 2 0 Median 1.3568 1.2194 6.0182 3 0 Plateau 0.85873 0.94114 3.0911 2 0 Median 1.0805 0.96089 17.167 3 0 Median 1.1343 1.1776 3.8289 2 0 Median 1.1152 0.95495 11.508 3 0 Plateau 792170000 379800000 412370000 84610000 35935000 48675000 159130000 67942000 91186000 392880000 203300000 189570000 95021000 45042000 49980000 42861000 19757000 23105000 17673000 7824600 9848800 16732 2681 17456 87026;87027;87028;87029;87030;87031;87032;87033;87034;87035;87036;87037;87038;87039;87040 88330;88331;88332;88333;88334;88335;88336;88337;88338;88339;88340;88341;88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354 88335 25 IVSSSDVGHDEYSTQSLVKK ADADDIDAWMLDILKIVSSSDVGHDEYSTQ DVGHDEYSTQSLVKKHKDVAEEIANYRPTL K I V K K H 0 0 0 2 0 1 1 1 1 1 1 2 0 0 0 5 1 0 1 3 0 0 20 1 2178.0804 Q01082;A0A087WUZ3 Q01082 766 785 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 6.7476E-11 92.492 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.2076 1.2703 37.211 6 Median 1.5517 1.5148 14.204 2 0 Median 1.4049 1.3389 NaN 1 0 Median 1.0277 1.1939 1.342 2 0 Median NaN NaN NaN 0 0 Median 0.52804 0.56899 NaN 1 0 Median NaN NaN NaN 0 0 Median 95603000 45693000 49911000 15220000 5958300 9262000 5776700 2841200 2935500 65584000 31068000 34516000 0 0 0 9022400 5825300 3197100 0 0 0 16733 2681 17457 87041;87042;87043;87044;87045;87046 88355;88356;88357;88358;88359;88360;88361;88362 88361 8 IVSVDKQQQWLLYLSNSGYLK GHEIGRMLALALLDRIVSVDKQQQWLLYLS QQQWLLYLSNSGYLKVLVDSLVEDDRTLQS R I V L K V 0 0 1 1 0 3 0 1 0 1 4 2 0 0 0 3 0 1 2 2 0 0 21 1 2481.3268 Q92621;U3KPX2 Q92621 1503 1523 NUP205 Nuclear pore complex protein Nup205 yes no 3 0.0088452 28.813 By MS/MS 1 0.76399 0.87571 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76399 0.87571 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1817700 964420 853270 0 0 0 0 0 0 1817700 964420 853270 0 0 0 0 0 0 0 0 0 16734 3547 17458 87047 88363 88363 1 IVSWLEYESSFSNEEAQK FKEGKYKQALLQYKKIVSWLEYESSFSNEE WLEYESSFSNEEAQKAQALRLASHLNLAMC K I V Q K A 1 0 1 0 0 1 4 0 0 1 1 1 0 1 0 4 0 1 1 1 0 0 18 0 2144.9902 Q02790 Q02790 296 313 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.037726 22.232 By matching By MS/MS 1 1 1.0533 1.0525 13.005 2 Median 0.98968 0.96001 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1209 1.1539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3134400 1627900 1506500 720560 361490 359070 0 0 0 2413800 1266400 1147500 0 0 0 0 0 0 0 0 0 16735 2701 17459 87048;87049 88364 88364 1 IVSWSQVGVEPSIMGIGPIPAIK KKSEADKRGLTPLARIVSWSQVGVEPSIMG VEPSIMGIGPIPAIKQAVTKAGWSLEDVDI R I V I K Q 1 0 0 0 0 1 1 3 0 5 0 1 1 0 3 3 0 1 0 3 0 0 23 0 2377.3079 Q9BWD1 Q9BWD1 280 302 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 1.6081E-11 59.306 By matching By MS/MS By matching 1 1 1 0.82044 0.70616 10.618 3 Plateau 0.62131 0.60376 NaN 1 0 Median 0.82044 0.70616 NaN 1 0 Median 0.67367 0.73926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3913400 2317400 1596000 250420 155600 94824 3160200 1856900 1303300 502850 304940 197900 0 0 0 0 0 0 0 0 0 16736 3868 17460 87050;87051;87052 88365;88366 88365 2 IVTDSDSKTEELR KFIVDGVEVSVTTSKIVTDSDSKTEELRFL SKIVTDSDSKTEELRFLRRQELRELRFLQK K I V L R F 0 1 0 2 0 0 2 0 0 1 1 1 0 0 0 2 2 0 0 1 0 0 13 1 1491.7417 Q9H2G2 Q9H2G2 812 824 SLK STE20-like serine/threonine-protein kinase yes yes 2;3 0.00073738 83 By MS/MS By MS/MS 1 1 0.93407 0.92059 15.357 2 Median 1.0132 1.0262 NaN 1 0 Median 0.86115 0.82586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4766200 2300800 2465400 3666000 1664500 2001500 1100200 636310 463910 0 0 0 0 0 0 0 0 0 0 0 0 16737 3942 17461 87053;87054 88367;88368 88367 2 IVTEETMTTTTVTEK IARRLGYISVVDTLKIVTEETMTTTTVTEK IVTEETMTTTTVTEKHKMNVPETMNEVLDM K I V E K H 0 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 7 0 0 2 0 0 15 0 1682.8284 Q12955 Q12955 817 831 ANK3 Ankyrin-3 yes yes 2 0.00027752 69.451 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.1238 1.05 22.877 4 Median 1.0017 0.96253 NaN 1 0 Median 1.6817 1.4747 NaN 1 0 Median 0.79353 0.87611 NaN 1 0 Median 1.2608 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18301000 9712600 8588600 4755800 2461400 2294400 1392800 601120 791710 10698000 5989300 4708700 1454500 660820 793730 0 0 0 0 0 0 16738 2773 17462 87055;87056;87057;87058 88369;88370 88370 2 IVTGGSDNHLILVDLR NCRALSEALTELGYKIVTGGSDNHLILVDL VTGGSDNHLILVDLRSKGTDGGRAEKVLEA K I V L R S 0 1 1 2 0 0 0 2 1 2 3 0 0 0 0 1 1 0 0 2 0 0 16 0 1720.9472 P34896 P34896 349 364 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 3 0.0021025 29.733 By matching By matching By MS/MS By matching 1 1 1 2 1.0354 0.91297 7.916 5 Median 0.80929 0.80507 NaN 1 0 Median 1.0367 0.92449 NaN 1 0 Median 0.86901 0.87212 NaN 1 0 Median 1.0864 0.95464 6.3114 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6938900 3430600 3508300 1789500 876310 913230 163520 82266 81253 4507900 2252200 2255800 477900 219870 258030 0 0 0 0 0 0 16739 2227 17463 87059;87060;87061;87062;87063 88371;88372 88371 2 IVTGNFILR PLFGFFGNGEIGCDRIVTGNFILRKCNEVK EIGCDRIVTGNFILRKCNEVKDDDLFHSYT R I V L R K 0 1 1 0 0 0 0 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1031.6128 Q8NEZ5;H3BTR7 Q8NEZ5 368 376 FBXO22 F-box only protein 22 yes no 2 0.039166 46.426 By MS/MS By MS/MS 1 1 1.207 1.2553 7.8682 2 Median 1.192 1.1873 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2222 1.3271 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13135000 5657700 7476900 10407000 4602400 5805100 0 0 0 2727100 1055300 1671800 0 0 0 0 0 0 0 0 0 16740 3432 17464 87064;87065 88373;88374 88373 2 IVTLEEEPIK SGGYLVLYKMNYATRIVTLEEEPIKIQHIK NYATRIVTLEEEPIKIQHIKDPQDTITSLI R I V I K I 0 0 0 0 0 0 3 0 0 2 1 1 0 0 1 0 1 0 0 1 0 0 10 0 1169.6544 A0A3B3IUB9;Q9NR09 Q9NR09 836 845 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.0089627 76.064 By MS/MS 1 0.76909 0.67051 NaN 1 Median NaN NaN NaN 0 0 Median 0.76909 0.67051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3964500 2095800 1868600 0 0 0 3964500 2095800 1868600 0 0 0 0 0 0 0 0 0 0 0 0 16741 4073;445 17465 87066 88375 88375 0 IVTSEEVIIR WIRAQATISVLQKPRIVTSEEVIIRDSPVL LQKPRIVTSEEVIIRDSPVLPVTLQCNLTS R I V I R D 0 1 0 0 0 0 2 0 0 3 0 0 0 0 0 1 1 0 0 2 0 0 10 0 1157.6656 Q9Y639;H3BQ94;Q9UFM8 Q9Y639 150 159 NPTN;DKFZp566H1924 Neuroplastin yes no 2 0.00037898 80.455 By MS/MS By MS/MS 1 2 1.2533 1.1463 16.396 3 Median 0.96809 0.91714 NaN 1 0 Median 1.3522 1.2031 6.8372 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22060000 10234000 11826000 15033000 7350100 7682500 7027300 2884200 4143200 0 0 0 0 0 0 0 0 0 0 0 0 16742 4477 17466 87067;87068;87069 88376;88377;88378 88376 3 IVTTDFR IWQFEDLVPCGVFMKIVTTDFRKSGPHCSE VPCGVFMKIVTTDFRKSGPHCSESIHRSWD K I V F R K 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 7 0 850.45487 P42785;E9PQB5;E9PL85;E9PQN3;E9PKN6;E9PIG4 P42785 221 227 PRCP Lysosomal Pro-X carboxypeptidase yes no 2 0.019661 78.616 By MS/MS 1 1.6395 1.4219 NaN 1 Median NaN NaN NaN 0 0 Median 1.6395 1.4219 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3886000 1283500 2602500 0 0 0 3886000 1283500 2602500 0 0 0 0 0 0 0 0 0 0 0 0 16743 2318 17467 87070 88379 88379 1 IVTTPQTVLR IIMRFRKRKNFKKKRIVTTPQTVLRINSIE FKKKRIVTTPQTVLRINSIEIAPCLL____ R I V L R I 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 3 0 0 2 0 0 10 0 1126.671 Q7Z2W9 Q7Z2W9 185 194 MRPL21 39S ribosomal protein L21, mitochondrial yes yes 2 0.00036244 107.57 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0488 0.93623 17.248 6 Median 0.89848 0.88719 2.026 2 0 Median 1.1605 1.0384 10.786 2 0 Median 0.94799 0.91102 NaN 1 0 Median 1.6506 1.3654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45194000 21175000 24019000 25071000 11904000 13167000 10615000 4574600 6040800 7872700 4145500 3727100 1634900 550580 1084300 0 0 0 0 0 0 16744 3237 17468 87071;87072;87073;87074;87075;87076 88380;88381;88382;88383;88384;88385;88386;88387;88388 88381 9 IVTTYIR SKLSSYPRLREETERIVTTYIREREGRTKD RLREETERIVTTYIREREGRTKDQILLLID R I V I R E 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 1 1 0 0 7 0 864.5069 P50570 P50570 459 465 DNM2 Dynamin-2 no no 2 0.0026408 117.7 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.98311 1.0439 44 5 Median NaN NaN NaN 0 0 Median 0.64374 0.55931 NaN 1 0 Median 1.0214 1.077 4.4136 2 0 Median NaN NaN NaN 0 0 Median 1.6538 1.751 NaN 1 0 Median 0.8711 0.70764 NaN 1 0 Median 19421000 9288100 10133000 0 0 0 2140600 1074200 1066400 11802000 5582300 6219600 0 0 0 2846400 1276000 1570300 2632600 1355600 1277000 16745 2417 17469 87077;87078;87079;87080;87081 88389;88390;88391;88392 88390 4 IVTVVPQDTK VSHGEVLRKVERGSRIVTVVPQDTKLVLQM ERGSRIVTVVPQDTKLVLQMPRGNLEVVHH R I V T K L 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 2 0 0 3 0 0 10 0 1098.6285 O95163;F5H2T0 O95163 697 706 IKBKAP Elongator complex protein 1 yes no 2 0.00073096 100.25 By MS/MS By MS/MS 2 1 1.1607 0.99942 6.8019 3 Median 1.0891 1.0543 7.5609 2 0 Median 1.1607 0.98025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21076000 9888700 11188000 5552800 2762800 2790000 15524000 7125900 8397700 0 0 0 0 0 0 0 0 0 0 0 0 16746 1749 17470 87082;87083;87084 88393;88394;88395;88396;88397 88397 5 IVVDELSNLKK TPHKEDLSSKIKEQKIVVDELSNLKKNRPK KEQKIVVDELSNLKKNRPKLCFPESI____ K I V K K N 0 0 1 1 0 0 1 0 0 1 2 2 0 0 0 1 0 0 0 2 0 0 11 1 1256.734 U3KQP6;U3KQ49;L0R819;U3KQP1 U3KQP6 36 46 ASNSD1 yes no 3 0.0012348 46.592 By MS/MS By matching 1 1 1.075 0.96862 3.5667 2 Median 1.0086 0.9445 NaN 1 0 Median 1.1459 0.99336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5121900 2450400 2671500 3578700 1785600 1793100 1543300 664840 878440 0 0 0 0 0 0 0 0 0 0 0 0 16747 1405 17471 87085;87086 88398;88399 88398 2 IVVDSESR DLPPREKPPNKSSMRIVVDSESRKRTIGSG PNKSSMRIVVDSESRKRTIGSGEPGVPTKK R I V S R K 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 8 0 903.46616 Q5T8P6 Q5T8P6 483 490 RBM26 RNA-binding protein 26 no no 2 0.066122 31.304 By MS/MS 1 0.98898 1.0658 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98898 1.0658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 989050 518200 470860 0 0 0 0 0 0 989050 518200 470860 0 0 0 0 0 0 0 0 0 16748 3097 17472 87087 88400 88400 1 IVVEMIKR NILEEENHIKDALSRIVVEMIKREWPQHWP IKDALSRIVVEMIKREWPQHWPDMLIELDT R I V K R E 0 1 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 0 2 0 0 8 1 986.59467 Q9HAV4 Q9HAV4 119 126 XPO5 Exportin-5 yes yes 2 0.0038866 105.39 By MS/MS By matching 1 1 1.2567 1.2535 3.1039 2 Median 1.231 1.2813 NaN 1 0 Median 1.2829 1.2263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6748600 3036400 3712200 5766100 2651100 3115000 982470 385290 597180 0 0 0 0 0 0 0 0 0 0 0 0 16749 4012 17473 87088;87089 88401 88401 1 IVVFQYSDGK TAMVYPEEAEPKQGRIVVFQYSDGKLQTVA PKQGRIVVFQYSDGKLQTVAEKEVKGAVYS R I V G K L 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 2 0 0 10 0 1154.5972 Q16531;F5GY55 Q16531 848 857 DDB1 DNA damage-binding protein 1 yes no 2 7.8138E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1.011 0.97328 20.29 10 Median 0.99305 0.95975 2.5976 2 1 Median 1.2642 1.0673 11.448 3 1 Median 0.77878 0.82955 3.7453 3 1 Plateau 1.3217 1.2763 24.535 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130330000 66984000 63345000 25825000 13625000 12200000 42114000 20985000 21129000 48160000 27111000 21049000 14231000 5263100 8967700 0 0 0 0 0 0 16750 2985 17474 87090;87091;87092;87093;87094;87095;87096;87097;87098;87099;87100 88402;88403;88404;88405;88406;88407;88408;88409;88410;88411;88412;88413;88414;88415;88416;88417 88416 16 IVVFQYSDGKLQTVAEK TAMVYPEEAEPKQGRIVVFQYSDGKLQTVA VFQYSDGKLQTVAEKEVKGAVYSMVEFNGK R I V E K E 1 0 0 1 0 2 1 1 0 1 1 2 0 1 0 1 1 0 1 3 0 0 17 1 1924.0306 Q16531;F5GY55 Q16531 848 864 DDB1 DNA damage-binding protein 1 yes no 3 8.5783E-06 56.959 By MS/MS 2 0.88141 1.0114 0.43998 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88141 1.0114 0.43998 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16586000 9199300 7386600 0 0 0 0 0 0 16586000 9199300 7386600 0 0 0 0 0 0 0 0 0 16751 2985 17475 87101;87102 88418;88419;88420 88419 3 IVVGHAIHNDFK FKIARGQILKILTGKIVVGHAIHNDFKALQ TGKIVVGHAIHNDFKALQYFHPKSLTRDTS K I V F K A 1 0 1 1 0 0 0 1 2 2 0 1 0 1 0 0 0 0 0 2 0 0 12 0 1348.7252 Q9H9L3 Q9H9L3 258 269 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 3 0.0081616 28.327 By MS/MS 1 1.1971 1.3369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1971 1.3369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1989100 857810 1131300 0 0 0 0 0 0 1989100 857810 1131300 0 0 0 0 0 0 0 0 0 16752 4001 17476 87103 88421;88422 88422 2 IVVHLHPAPPNK VFIEEQAAGIGKSAKIVVHLHPAPPNKEPG SAKIVVHLHPAPPNKEPGPFQSSKNSYIKL K I V N K E 1 0 1 0 0 0 0 0 2 1 1 1 0 0 3 0 0 0 0 2 0 0 12 0 1320.7666 Q86VN1;A0A3B3ISW7 Q86VN1 82 93 VPS36 Vacuolar protein-sorting-associated protein 36 yes no 3 0.051908 14.561 By MS/MS 1 0.44361 0.48819 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44361 0.48819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 546290 363490 182800 0 0 0 0 0 0 546290 363490 182800 0 0 0 0 0 0 0 0 0 16753 3287 17477 87104 88423 88423 1 IVVHLHPAPPNKEPGPFQSSK VFIEEQAAGIGKSAKIVVHLHPAPPNKEPG PAPPNKEPGPFQSSKNSYIKLSFKEHGQIE K I V S K N 1 0 1 0 0 1 1 1 2 1 1 2 0 1 5 2 0 0 0 2 0 0 21 1 2278.2222 Q86VN1;A0A3B3ISW7 Q86VN1 82 102 VPS36 Vacuolar protein-sorting-associated protein 36 yes no 4 0.05261 17.369 By MS/MS 1 0.46619 0.50802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46619 0.50802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11277000 8259600 3017200 0 0 0 0 0 0 11277000 8259600 3017200 0 0 0 0 0 0 0 0 0 16754 3287 17478 87105 88424 88424 1 IVVLFYK EYCYDNIHFMKAFQKIVVLFYKADVLSEEA HFMKAFQKIVVLFYKADVLSEEAILKWYKE K I V Y K A 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 2 0 0 7 0 880.54223 Q7L1Q6;E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4 E7ETZ4 363 369 BZW1;BZW2 Basic leucine zipper and W2 domain-containing protein 1;Basic leucine zipper and W2 domain-containing protein 2 no no 2 0.01617 69.39 By MS/MS By MS/MS By matching 2 2 1 1.3972 1.2539 14.974 5 Median 1.2335 1.1568 17.078 2 0 Median NaN NaN NaN 0 0 Median 1.333 1.3938 16.019 2 0 Median 1.4054 1.2539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21011000 10033000 10978000 13133000 6636800 6495700 0 0 0 7233600 3137100 4096500 644400 258830 385580 0 0 0 0 0 0 16755 892;3219 17479 87106;87107;87108;87109;87110 88425;88426;88427;88428;88429;88430;88431;88432 88427 8 IVVLLQR EDKGPPCGPVNCNEKIVVLLQRLKPEIKDV GPVNCNEKIVVLLQRLKPEIKDVIEQLNLV K I V Q R L 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 7 0 839.55927 Q06323;H0YLU2 Q06323 110 116 PSME1 Proteasome activator complex subunit 1 yes no 2 0.00041182 143.22 By MS/MS By MS/MS By matching 1 2 1 1.2595 1.0573 19.147 4 Median 1.0836 1.0121 NaN 1 0 Median 1.2595 1.0573 4.0933 2 0 Median 1.5671 1.5203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64800000 30188000 34612000 51339000 24180000 27159000 11574000 5264800 6309400 1886300 742440 1143900 0 0 0 0 0 0 0 0 0 16756 2724 17480 87111;87112;87113;87114 88433;88434;88435;88436 88434 4 IVVMPGGGITDR GLPLIKRLIEQAKGRIVVMPGGGITDRNLQ KGRIVVMPGGGITDRNLQRILEGSGATEFH R I V D R N 0 1 0 1 0 0 0 3 0 2 0 0 1 0 1 0 1 0 0 2 0 0 12 0 1213.6489 Q9NTM9;Q5TCZ7 Q9NTM9 196 207 CUTC Copper homeostasis protein cutC homolog yes no 2 0.00011669 125.97 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.97665 0.93818 57.782 6 Median 0.47056 0.44035 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97665 0.93818 4.7249 2 0 Median 0.80791 0.72472 47.098 2 0 Median 1.9151 2.2514 NaN 1 0 Median NaN NaN NaN 0 0 Median 65535000 36858000 28677000 19290000 15363000 3926900 0 0 0 39645000 19337000 20307000 3241100 1395600 1845500 3359400 762130 2597300 0 0 0 16757 4110 17481;17482 87115;87116;87117;87118;87119;87120 88437;88438;88439;88440;88441;88442 88442 1877 6 IVVNLTGR YIGEFEIIDDHRAGKIVVNLTGRLNKCGVI DDHRAGKIVVNLTGRLNKCGVISPRFDVQL K I V G R L 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 870.5287 H3BN98;I3L3P7;P62244;I3L246 I3L3P7 61 68 RPS15A 40S ribosomal protein S15a no no 2 0.0023555 133.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 2 4 5 1.3185 1.1211 18.522 23 Median 1.1577 1.1061 31.006 4 0 Median 1.2513 1.0394 20.202 5 0 Median 1.2942 1.307 16.634 3 0 Median 1.5197 1.2193 11.878 2 0 Median 1.3004 1.3735 12.64 4 0 Median 1.3871 1.082 15.704 5 0 Median 1502100000 676360000 825780000 314670000 146140000 168530000 1006900000 452080000 554850000 46827000 20895000 25932000 34985000 14833000 20153000 56888000 24599000 32289000 41831000 17808000 24023000 16758 1289;1213 17483 87121;87122;87123;87124;87125;87126;87127;87128;87129;87130;87131;87132;87133;87134;87135;87136;87137;87138;87139;87140;87141;87142;87143 88443;88444;88445;88446;88447;88448;88449;88450;88451;88452;88453;88454;88455;88456;88457;88458;88459;88460;88461;88462;88463;88464;88465;88466;88467;88468;88469 88444 27 IVVNLTGRLNK YIGEFEIIDDHRAGKIVVNLTGRLNKCGVI RAGKIVVNLTGRLNKCGVISPRFDVQLKDL K I V N K C 0 1 2 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 11 1 1225.7507 H3BN98;I3L3P7;P62244;I3L246 I3L3P7 61 71 RPS15A 40S ribosomal protein S15a no no 2 0.00097397 101.54 By MS/MS 1 1.1368 1.0037 NaN 1 Median NaN NaN NaN 0 0 Median 1.1368 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5835200 2310700 3524500 0 0 0 5835200 2310700 3524500 0 0 0 0 0 0 0 0 0 0 0 0 16759 1289;1213 17484 87144 88470;88471 88470 2 IVVPPLPGK SDFEWLKNELERDSKIVVPPLPGKALKRQL LERDSKIVVPPLPGKALKRQLPFRGDEGIF K I V G K A 0 0 0 0 0 0 0 1 0 1 1 1 0 0 3 0 0 0 0 2 0 0 9 0 918.59024 A0A087X0R6;Q9UMY4 A0A087X0R6 88 96 SNX12 Sorting nexin-12 yes no 2 0.0034888 64.757 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 0.88139 0.73377 20.481 9 Median 0.64302 0.60461 1.3828 2 0 Median 0.93587 0.79019 5.0494 2 0 Median 0.61316 0.59368 44.984 2 0 Median 0.90197 0.74065 2.6112 2 0 Median NaN NaN NaN 0 0 Median 0.88139 0.73377 NaN 1 0 Median 106220000 59251000 46971000 57185000 32628000 24557000 19080000 10236000 8844100 24257000 13467000 10790000 5216800 2667300 2549500 0 0 0 483890 252810 231080 16760 112 17485 87145;87146;87147;87148;87149;87150;87151;87152;87153 88472;88473;88474;88475;88476;88477;88478 88472 7 IVVSNTPR DTQLVVRQASLHVWKIVVSNTPRTLREILP ASLHVWKIVVSNTPRTLREILPTLFGLLLG K I V P R T 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 2 0 0 8 0 884.50797 Q92616 Q92616 1910 1917 GCN1L1 Translational activator GCN1 yes yes 2 0.031031 38.792 By matching By MS/MS By matching 1 2 1 0.93009 0.85044 58.123 4 Median 0.92504 0.92126 NaN 1 0 Median 0.92892 0.78183 0.58411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3312 2.6135 NaN 1 0 Median 3699900 1737800 1962100 541150 288160 252990 2441800 1239800 1202000 0 0 0 0 0 0 0 0 0 717000 209880 507120 16761 3544 17486 87154;87155;87156;87157 88479 88479 1 IVVVTAGVR KIVADKDYSVTANSKIVVVTAGVRQQEGES VTANSKIVVVTAGVRQQEGESRLNLVQRNV K I V V R Q 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 4 0 0 9 0 912.57565 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 92 100 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2 1.2567E-11 180.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 10 4 2 3 4 1.2109 1.0804 15.043 34 Median 1.2116 1.1702 7.9773 11 0 Median 1.2564 1.0607 7.7291 10 1 Median 1.1464 1.0918 22.475 4 0 Median 1.2221 1.0344 1.8749 2 0 Median 1.2664 1.2766 8.9057 3 0 Plateau 1.102 0.88477 20.74 4 0 Median 3565400000 1539500000 2025900000 1434200000 619890000 814320000 1852100000 793400000 1058700000 142120000 64018000 78100000 82538000 37115000 45424000 24452000 10400000 14052000 29993000 14689000 15304000 16762 1880 17487 87158;87159;87160;87161;87162;87163;87164;87165;87166;87167;87168;87169;87170;87171;87172;87173;87174;87175;87176;87177;87178;87179;87180;87181;87182;87183;87184;87185;87186;87187;87188;87189;87190;87191 88480;88481;88482;88483;88484;88485;88486;88487;88488;88489;88490;88491;88492;88493;88494;88495;88496;88497;88498;88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511;88512;88513;88514;88515;88516;88517;88518;88519;88520;88521;88522;88523;88524;88525;88526;88527;88528;88529;88530;88531;88532;88533;88534;88535;88536 88492 57 IVVVWVGTNNHGHTAEQVTGGIK LWRLENGELEHIRPKIVVVWVGTNNHGHTA NNHGHTAEQVTGGIKAIVQLVNERQPQARV K I V I K A 1 0 2 0 0 1 1 4 2 2 0 1 0 0 0 0 3 1 0 5 0 0 23 0 2415.2659 Q15102;M0R389;M0QZT2 Q15102 96 118 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 3 7.8212E-35 135.73 By MS/MS By MS/MS 1 1 1.1039 0.97672 12.032 2 Median 0.97068 0.89706 NaN 1 0 Median 1.2554 1.0635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45156000 22937000 22219000 42893000 21733000 21160000 2263400 1204400 1059000 0 0 0 0 0 0 0 0 0 0 0 0 16763 2928 17488 87192;87193 88537;88538;88539;88540 88537 4 IVWLQEK EFDVEMSMREDVYQRIVWLQEKVQKDSLRP MREDVYQRIVWLQEKVQKDSLRPEAARYLE R I V E K V 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 7 0 914.52255 P52888;K7EKB6 P52888 122 128 THOP1 Thimet oligopeptidase yes no 2 0.023125 72.138 By MS/MS 1 1.1753 1.0638 NaN 1 Median 1.1753 1.0638 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12761000 5361400 7399500 12761000 5361400 7399500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16764 2460 17489 87194 88541 88541 1 IVYGHLDDPASQEIER IVRKRLNRPLTLSEKIVYGHLDDPASQEIE VYGHLDDPASQEIERGKSYLRLRPDRVAMQ K I V E R G 1 1 0 2 0 1 2 1 1 2 1 0 0 0 1 1 0 0 1 1 0 0 16 0 1840.8955 A2A274;Q99798 A2A274 69 84 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 2.3603E-06 85.493 By MS/MS By MS/MS 2 2 0.96392 0.87238 26.274 4 Median 0.73553 0.69544 5.2939 2 0 Median 1.2594 1.0901 4.7458 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97443000 52839000 44604000 78791000 44709000 34082000 18652000 8130400 10522000 0 0 0 0 0 0 0 0 0 0 0 0 16765 495 17490 87195;87196;87197;87198 88542;88543;88544;88545 88543 4 IVYLYTK TASNKTRLSRTPGNRIVYLYTKKVGKAPKS LSRTPGNRIVYLYTKKVGKAPKSACGVCPG R I V T K K 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 2 1 0 0 7 0 898.51641 P49207 P49207 30 36 RPL34 60S ribosomal protein L34 yes yes 2 0.0030939 105.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 3 1.1983 1.0204 8.2966 13 Median 1.1923 1.1504 11.918 4 0 Linear 1.2315 1.0194 5.3118 4 0 Median 1.1777 1.1199 NaN 1 0 Median 1.342 1.0779 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.275 1.0168 6.0857 3 0 Median 327940000 150840000 177110000 149380000 70947000 78431000 118730000 53673000 65056000 27019000 12015000 15005000 9793500 4230300 5563200 0 0 0 23024000 9973000 13051000 16766 2373 17491 87199;87200;87201;87202;87203;87204;87205;87206;87207;87208;87209;87210;87211 88546;88547;88548;88549;88550;88551;88552;88553;88554;88555;88556;88557;88558;88559 88555 14 IVYLYTKK TASNKTRLSRTPGNRIVYLYTKKVGKAPKS SRTPGNRIVYLYTKKVGKAPKSACGVCPGR R I V K K V 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 1 0 2 1 0 0 8 1 1026.6114 P49207 P49207 30 37 RPL34 60S ribosomal protein L34 yes yes 2 0.0073605 77.282 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.3197 1.2157 10.877 6 Median 1.205 1.2024 NaN 1 0 Median 1.276 1.1171 16.33 2 0 Median 1.201 1.2292 NaN 1 0 Median 1.5421 1.2934 NaN 1 0 Median 1.4453 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median 21323000 9216100 12107000 13064000 5741400 7322700 4608700 1872000 2736700 2199800 1060600 1139300 989600 373630 615970 460890 168540 292350 0 0 0 16767 2373 17492 87212;87213;87214;87215;87216;87217 88560;88561;88562;88563;88564 88560 5 IVYPPQLPGEPR SASLDISRKWEKKNKIVYPPQLPGEPRRPA KNKIVYPPQLPGEPRRPAEIYHCRRQIKYS K I V P R R 0 1 0 0 0 1 1 1 0 1 1 0 0 0 4 0 0 0 1 1 0 0 12 0 1364.7452 J3KQY1;E7ESL0;Q9NWU5 J3KQY1 77 88 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.00015076 87.913 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.81196 0.72132 107.62 4 Median 0.7342 0.69476 NaN 1 0 Median 0.89795 0.74891 NaN 1 0 Median 0.6274 0.59699 NaN 1 0 Median NaN NaN NaN 0 0 Median 5.0178 5.7805 NaN 1 0 Median NaN NaN NaN 0 0 Median 19610000 7204000 12406000 7425800 4093400 3332500 804000 416480 387530 3207100 1952500 1254600 0 0 0 8172600 741650 7431000 0 0 0 16768 887 17493 87218;87219;87220;87221 88565;88566;88567;88568;88569 88566 5 IVYPTEK ______________________________ PNCARCGKIVYPTEKVNCLDKFWHKACFHC K I V E K V 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 7 0 848.46437 Q14847;F6S2S5;K7ESD6 Q14847 11 17 LASP1 LIM and SH3 domain protein 1 yes no 2 0.030589 64.803 By MS/MS 1 1.0195 1.0025 NaN 1 Median 1.0195 1.0025 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080900 937990 1142900 2080900 937990 1142900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16769 2901 17494 87222 88570 88570 1 IWADIPAPK ADYEETVKKAREAWKIWADIPAPKRGEIVR AREAWKIWADIPAPKRGEIVRQIGDALREK K I W P K R 2 0 0 1 0 0 0 0 0 2 0 1 0 0 2 0 0 1 0 0 0 0 9 0 1009.5597 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A0J9YWF7;A0A1B0GUY0;F8WDY6 P49419 101 109 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.0040235 61.962 By MS/MS By matching By matching 1 2 1 0.84668 0.78712 23.749 4 Median 0.57953 0.5366 NaN 1 0 Median 1.0412 0.88477 2.9712 2 0 Median 0.70635 0.71511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18394000 10976000 7418000 13284000 8362700 4921100 4030800 1978200 2052700 1079300 635060 444200 0 0 0 0 0 0 0 0 0 16770 318 17495 87223;87224;87225;87226 88571 88571 1 IWAHEALR ALRPLETLPVEGLIRIWAHEALRLFQDRLV PVEGLIRIWAHEALRLFQDRLVEDEERRWT R I W L R L 2 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 8 0 994.53485 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2824 2831 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0027808 128.57 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0067 0.95621 74.187 5 Median 1.9434 1.9029 NaN 1 0 Median 2.3055 1.8434 NaN 1 0 Median 0.76606 0.80693 NaN 1 0 Median 0.59842 0.54446 79.647 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65230000 27893000 37337000 11900000 3792200 8107800 30390000 10080000 20311000 13713000 7774900 5937800 9227400 6246200 2981200 0 0 0 0 0 0 16771 2865 17496 87227;87228;87229;87230;87231 88572;88573;88574;88575;88576 88572 5 IWCFGPDGTGPNILTDITK YLAEKYEWDVAEARKIWCFGPDGTGPNILT GPDGTGPNILTDITKGVQYLNEIKDSVVAG K I W T K G 0 0 1 2 1 0 0 3 0 3 1 1 0 1 2 0 3 1 0 0 0 0 19 0 2104.0299 P13639 P13639 649 667 EEF2 Elongation factor 2 yes yes 2 0.036687 21.759 By MS/MS 2 0.59822 0.51898 12.648 2 Median NaN NaN NaN 0 0 Median 0.59822 0.51898 12.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2328200 1379100 949090 0 0 0 2328200 1379100 949090 0 0 0 0 0 0 0 0 0 0 0 0 16772 1992 17497 87232;87233 88577 88577 1 IWDLASGK GNQWFVTGSADRTIKIWDLASGKLKLSLTG SADRTIKIWDLASGKLKLSLTGHISTVRGV K I W G K L 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 888.47052 O43660 O43660 230 237 PLRG1 Pleiotropic regulator 1 yes yes 2 0.014305 51.346 By matching By MS/MS By matching 1 1 1 1.2646 1.1029 8.4448 3 Median NaN NaN NaN 0 0 Median 1.3808 1.2264 NaN 1 0 Median 1.0176 1.0379 NaN 1 0 Median 1.2646 1.1029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4286300 2006300 2280000 0 0 0 287520 154010 133510 3444600 1610400 1834200 554100 241850 312250 0 0 0 0 0 0 16773 1580 17498 87234;87235;87236 88578;88579 88579 2 IWDLEGK PNRYWLCAATGPSIKIWDLEGKIIVDELKQ AATGPSIKIWDLEGKIIVDELKQEVISTSS K I W G K I 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 7 0 859.44397 P63244;J3KPE3;D6RAC2;D6REE5;H0Y8W2;H0YAF8;H0YAM7;D6RF23;H0Y9P0 P63244 258 264 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.016334 68.915 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.2129 1.0179 10.11 5 Median 1.1072 1.0048 NaN 1 0 Median 1.1621 0.97638 NaN 1 0 Median 1.222 1.1761 NaN 1 1 Median 1.2129 1.0179 NaN 1 0 Median 1.2367 1.22 NaN 1 0 Median NaN NaN NaN 0 0 Median 61829000 28344000 33486000 28694000 13254000 15439000 12023000 5632700 6390500 12485000 5665700 6819300 7725600 3517900 4207700 902120 273010 629110 0 0 0 16774 2624 17499 87237;87238;87239;87240;87241 88580;88581;88582;88583 88581 4 IWDLQAGADR AANVLASSSYDLTVRIWDLQAGADRLKLQG DLTVRIWDLQAGADRLKLQGHQDQIFSLAW R I W D R L 2 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 10 0 1143.5673 A0A0A6YYL4;P57737 A0A0A6YYL4 621 630 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 0.0012653 88.948 By MS/MS 2 1.1306 1.0932 NaN 1 Median 1.1306 1.0932 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5207800 2455200 2752600 5207800 2455200 2752600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16775 209 17500 87242;87243 88584;88585 88584 2 IWDLQGSEEPVFR HPHVVATGGKENALKIWDLQGSEEPVFRAK LKIWDLQGSEEPVFRAKNVRNDWLDLRVPI K I W F R A 0 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 13 0 1574.7729 Q6RFH5;E9PS41 Q6RFH5 157 169 WDR74 WD repeat-containing protein 74 yes no 2 0.00040564 85.256 By MS/MS 2 0.88461 0.88991 7.9713 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88461 0.88991 7.9713 2 2 Median NaN NaN NaN 0 0 Median 4076200 2055300 2020800 0 0 0 0 0 0 0 0 0 0 0 0 4076200 2055300 2020800 0 0 0 16776 987 17501 87244;87245 88586;88587 88587 2 IWDPTPSHTPAGAATPGR RAKGSETPGATPGSKIWDPTPSHTPAGAAT PTPSHTPAGAATPGRGDTPGHATPGHGGAT K I W G R G 3 1 0 1 0 0 0 2 1 1 0 0 0 0 4 1 3 1 0 0 0 0 18 0 1830.9013 O75533 O75533 253 270 SF3B1 Splicing factor 3B subunit 1 yes yes 3 8.3117E-12 105.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.53017 0.54384 10.377 6 Median 0.44109 0.43068 NaN 1 0 Median 0.64848 0.5416 NaN 1 0 Median 0.52382 0.57583 NaN 1 0 Median 0.6552 0.55383 NaN 1 0 Median 0.51716 0.52831 4.6818 2 1 Median NaN NaN NaN 0 0 Median 82308000 52789000 29519000 2867200 1769500 1097800 12035000 7566300 4469100 20359000 13559000 6799800 21768000 12815000 8953000 25278000 17079000 8199100 0 0 0 16777 1683 17502 87246;87247;87248;87249;87250;87251 88588;88589;88590;88591;88592;88593;88594;88595;88596;88597;88598 88598 11 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR RAKGSETPGATPGSKIWDPTPSHTPAGAAT GHATPGHGGATSSARKNRWDETPKTERDTP K I W A R K 6 2 0 2 0 0 0 7 3 1 0 0 0 0 6 3 6 1 0 0 0 0 37 1 3545.6785 O75533 O75533 253 289 SF3B1 Splicing factor 3B subunit 1 yes yes 5 1.1524E-05 45.003 By MS/MS 1 0.30567 0.37176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30567 0.37176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32725000 27544000 5180600 0 0 0 0 0 0 32725000 27544000 5180600 0 0 0 0 0 0 0 0 0 16778 1683 17503 87252 88599;88600 88600 2 IWDTLQK LPELKLEERTEFAHRIWDTLQKLGAVYDVS ERTEFAHRIWDTLQKLGAVYDVSHYNALLK R I W Q K L 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 7 0 902.48617 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 149 155 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.047302 41.502 By matching By MS/MS By matching By matching 1 2 2 1 1.0567 0.99444 15.396 6 Median 1.2025 1.1707 NaN 1 0 Median 1.1881 1.0337 29.21 2 0 Median 0.90932 0.95186 6.0727 2 0 Median 1.1443 0.99526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38908000 16919000 21988000 5957800 3154600 2803100 19955000 7416700 12538000 12021000 5993000 6027900 973970 354670 619300 0 0 0 0 0 0 16779 2315 17504 87253;87254;87255;87256;87257;87258 88601 88601 1 IWDTTQKEHLLK SGFYIASGDVSGKLRIWDTTQKEHLLKYEY KLRIWDTTQKEHLLKYEYQPFAGKIKDIAW R I W L K Y 0 0 0 1 0 1 1 0 1 1 2 2 0 0 0 0 2 1 0 0 0 0 12 1 1510.8144 O75083;D6RD66 O75083 84 95 WDR1 WD repeat-containing protein 1 yes no 2;3 0.00020299 70.1 By MS/MS By matching By matching 3 1 1 1.1932 1.1742 11.943 5 Median 1.1932 1.1184 13.631 3 0 Median 1.4684 1.3985 NaN 1 0 Median 1.1145 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32563000 14732000 17831000 26937000 11956000 14981000 4532900 2271900 2261000 1093200 504010 589220 0 0 0 0 0 0 0 0 0 16780 1643 17505 87259;87260;87261;87262;87263 88602;88603;88604;88605 88602 4 IWEPTILPNGYMFSR EPYSRFMIELTKLLKIWEPTILPNGYMFSR IWEPTILPNGYMFSRIEEEHLWECKQLGAY K I W S R I 0 1 1 0 0 0 1 1 0 2 1 0 1 1 2 1 1 1 1 0 0 0 15 0 1822.9076 Q5VZL5;H7C1I7 Q5VZL5 1345 1359 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.0061453 34.378 By MS/MS 1 0.68738 0.76433 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68738 0.76433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1134700 710790 423920 0 0 0 0 0 0 1134700 710790 423920 0 0 0 0 0 0 0 0 0 16781 3117 17506 87264 88606;88607 88607 2 IWEPTYTIMYR QLSCNGNVKSDKLRRIWEPTYTIMYREMKD KLRRIWEPTYTIMYREMKDSDKEKENGKMG R I W Y R E 0 1 0 0 0 0 1 0 0 2 0 0 1 0 1 0 2 1 2 0 0 0 11 0 1471.717 A0A087X2H1;Q9ULT8;H0YJP0;H0YJD4 A0A087X2H1 1871 1881 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 0.00054228 67.563 By MS/MS 1 1.1479 1.1521 NaN 1 Median 1.1479 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1876000 897400 978550 1876000 897400 978550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16782 137 17507 87265 88608;88609 88609 2 IWGAYDGKFEK NGEWLASSSADKLIKIWGAYDGKFEKTISG KLIKIWGAYDGKFEKTISGHKLGISDVAWS K I W E K T 1 0 0 1 0 0 1 2 0 1 0 2 0 1 0 0 0 1 1 0 0 0 11 1 1312.6452 P61964;V9GZ59 P61964 71 81 WDR5 WD repeat-containing protein 5 yes no 2;3 0.001389 72.643 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1.1872 1.2531 19.249 6 Median 1.372 1.2818 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.9593 1.0022 20.478 3 0 Median 1.4432 1.2851 NaN 1 0 Median 1.2537 1.3199 NaN 1 0 Median NaN NaN NaN 0 0 Median 39641000 20079000 19562000 3966900 1739100 2227800 0 0 0 31263000 16442000 14822000 1701500 661030 1040500 2709000 1237000 1472000 0 0 0 16783 2564 17508 87266;87267;87268;87269;87270;87271 88610;88611;88612;88613;88614;88615 88614 6 IWHHSFYNELR PIEHGIITNWDDMEKIWHHSFYNELRVAPE DMEKIWHHSFYNELRVAPEEHPTLLTEAPL K I W L R V 0 1 1 0 0 0 1 0 2 1 1 0 0 1 0 1 0 1 1 0 0 0 11 0 1500.7262 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6 P63267 86 96 ACTG2;ACTA2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle yes no 3 0.00098855 68.786 By MS/MS By MS/MS 1 1 0.86279 0.89852 24.189 2 Median 1.0686 1.0661 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.69662 0.75727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22232000 11112000 11121000 14163000 6085900 8076800 0 0 0 8069600 5025700 3043900 0 0 0 0 0 0 0 0 0 16784 2595 17509 87272;87273 88616;88617 88616 2 IWHHTFYNELR PIEHGIVTNWDDMEKIWHHTFYNELRVAPE DMEKIWHHTFYNELRVAPEEHPVLLTEAPL K I W L R V 0 1 1 0 0 0 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 0 11 0 1514.7419 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;P68032;P68133;A6NL76;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7 P63261 85 95 ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEI;POTEJ;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 2;3 2.7463E-13 147.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 13 13 7 8 8 1.1558 1.0581 24.637 62 Median 1.1829 1.1116 19.256 13 3 Median 1.1213 0.96978 12.774 13 2 Median 0.88427 0.97905 27.553 13 6 Median 1.1487 0.95162 42.438 7 0 Median 1.2076 1.2375 13.183 8 2 Median 1.309 1.0434 19.8 8 0 Median 22858000000 10611000000 12248000000 8593200000 3826900000 4766300000 5515900000 2385500000 3130400000 7150300000 3677500000 3472800000 745580000 328250000 417330000 526190000 252720000 273470000 326910000 139620000 187290000 16785 2625;2630;3181 17510 87274;87275;87276;87277;87278;87279;87280;87281;87282;87283;87284;87285;87286;87287;87288;87289;87290;87291;87292;87293;87294;87295;87296;87297;87298;87299;87300;87301;87302;87303;87304;87305;87306;87307;87308;87309;87310;87311;87312;87313;87314;87315;87316;87317;87318;87319;87320;87321;87322;87323;87324;87325;87326;87327;87328;87329;87330;87331;87332;87333;87334;87335;87336;87337 88618;88619;88620;88621;88622;88623;88624;88625;88626;88627;88628;88629;88630;88631;88632;88633;88634;88635;88636;88637;88638;88639;88640;88641;88642;88643;88644;88645;88646;88647;88648;88649;88650;88651;88652;88653;88654;88655;88656;88657;88658;88659;88660;88661;88662;88663;88664;88665;88666;88667;88668;88669;88670;88671;88672;88673;88674;88675;88676;88677;88678;88679;88680;88681;88682;88683;88684;88685;88686;88687;88688;88689;88690;88691;88692;88693;88694;88695;88696;88697;88698;88699;88700;88701;88702;88703;88704;88705;88706;88707;88708;88709;88710;88711;88712;88713;88714;88715;88716;88717;88718;88719;88720;88721;88722;88723;88724;88725;88726;88727;88728;88729;88730 88687 112 IWHSSTYR ELPIIITGSEDGTVRIWHSSTYRLESTLNY SEDGTVRIWHSSTYRLESTLNYGMERVWCV R I W Y R L 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 2 1 1 1 0 0 0 8 0 1048.509 P35606 P35606 255 262 COPB2 Coatomer subunit beta yes yes 2 0.0023729 91.906 By MS/MS 1 1.0853 0.94048 NaN 1 Median NaN NaN NaN 0 0 Median 1.0853 0.94048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3472100 1620500 1851500 0 0 0 3472100 1620500 1851500 0 0 0 0 0 0 0 0 0 0 0 0 16786 2246 17511 87338 88731 88731 1 IWIFDGPTGEGR REPLLVTNGADNALRIWIFDGPTGEGRLLR ALRIWIFDGPTGEGRLLRFRMGHSAPLTNI R I W G R L 0 1 0 1 0 0 1 3 0 2 0 0 0 1 1 0 1 1 0 0 0 0 12 0 1346.6619 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 303 314 WDR36 WD repeat-containing protein 36 yes no 2 0.001379 62.823 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 4 3 2 1.2506 1.1913 37.711 9 Median 1.2506 1.2632 NaN 1 0 Median 1.2628 1.0652 NaN 1 0 Median 1.0715 1.1254 4.4816 3 1 Median 2.5162 2.3471 37.968 3 0 Median 0.81153 0.86052 NaN 1 0 Median NaN NaN NaN 0 0 Median 32592000 15120000 17472000 3279600 1191800 2087800 2078700 975080 1103600 26157000 12440000 13717000 403460 112450 291010 673580 401060 272530 0 0 0 16787 188 17512 87339;87340;87341;87342;87343;87344;87345;87346;87347;87348;87349 88732;88733;88734;88735;88736;88737;88738 88734 7 IWNLSENSTSGSTQLVLR VSDLLASGSGDSTARIWNLSENSTSGSTQL LSENSTSGSTQLVLRHCIREGGQDVPSNKD R I W L R H 0 1 2 0 0 1 1 1 0 1 3 0 0 0 0 4 2 1 0 1 0 0 18 0 2004.0276 A0A0D9SF63;Q9BZK7;A0A1B0GVH3 A0A0D9SF63 195 212 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 2 1.239E-12 130.1 By matching By MS/MS By matching 1 1 1 1.0915 1.0859 15.201 3 Median NaN NaN NaN 0 0 Median 1.4524 1.2895 NaN 1 0 Median 1.0809 1.0859 NaN 1 0 Median 1.0915 0.95234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11025000 4899600 6125200 0 0 0 370010 156090 213930 10249000 4552100 5696400 406330 191420 214910 0 0 0 0 0 0 16788 265 17513 87350;87351;87352 88739;88740 88740 2 IWNLTQR KLATVLSGACDGEVRIWNLTQRNCIRTIQA GACDGEVRIWNLTQRNCIRTIQAHEGFVRG R I W Q R N 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 7 0 929.5083 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 245 251 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0096554 83.614 By MS/MS By matching 1 1 1.1729 1.0908 15.081 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2072 1.2135 NaN 1 0 Median 1.1395 0.98047 NaN 1 0 Median 8451000 3632500 4818500 0 0 0 0 0 0 0 0 0 0 0 0 6531300 2763200 3768200 1919700 869360 1050300 16789 13 17514 87353;87354 88741;88742 88741 2 IWNNVTR LLLPFRYVLDPPARRIWNNVTRWFVTCVRQ VLDPPARRIWNNVTRWFVTCVRQPEFRAVL R I W T R W 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 7 0 901.477 P26640;A0A140T936;A0A140T954 P26640 183 189 VARS Valine--tRNA ligase yes no 2 0.056263 50.127 By MS/MS 1 1.529 1.3068 NaN 1 Median NaN NaN NaN 0 0 Median 1.529 1.3068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898600 1373600 1524900 0 0 0 2898600 1373600 1524900 0 0 0 0 0 0 0 0 0 0 0 0 16790 2148 17515 87355 88743 88743 1 IWPYVYTLFSNK SRGVLHQFSGTETNKIWPYVYTLFSNKITP TNKIWPYVYTLFSNKITPIQSKEAY_____ K I W N K I 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 2 1 0 0 12 0 1529.7919 P27144;D3DQ64 P27144 202 213 AK4 Adenylate kinase 4, mitochondrial yes no 2 0.0043579 43.77 By MS/MS By matching 1 1 1.0879 0.98153 25.723 2 Median 0.87344 0.81829 NaN 1 0 Median 1.355 1.1773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3606500 1787200 1819300 3489500 1735400 1754100 117040 51797 65241 0 0 0 0 0 0 0 0 0 0 0 0 16791 2151 17516 87356;87357 88744;88745;88746 88744 3 IWQYVYSK PMEHGIVKDWNDMERIWQYVYSKDQLQTFS DWNDMERIWQYVYSKDQLQTFSEEHPVLLT R I W S K D 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 1 2 1 0 0 8 0 1085.5546 P42025;P61163;R4GMT0;A0A1B0GVS3 P61163 89 96 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2 0.014305 51.346 By MS/MS By MS/MS 1 1 0.97289 0.90945 12.114 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80943 0.83479 NaN 1 0 Median 1.1694 0.99079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49304000 24363000 24941000 0 0 0 0 0 0 45821000 22787000 23034000 3483100 1576100 1907000 0 0 0 0 0 0 16792 2547;2304 17517 87358;87359 88747;88748 88747 2 IWSEPFYQETYLPYMIR STASIDSENPPDLNKIWSEPFYQETYLPYM SEPFYQETYLPYMIRSKLKLLLQGEADQSL K I W I R S 0 1 0 0 0 1 2 0 0 2 1 0 1 1 2 1 1 1 3 0 0 0 17 0 2235.0711 P78527 P78527 3030 3046 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.6911E-05 78.096 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 0.7284 0.7859 15.635 10 Median 0.70466 0.70824 2.0261 3 0 Plateau 1.1625 1.0343 9.2251 3 0 Median 0.70896 0.78119 0.4699 2 0 Median NaN NaN NaN 0 0 Median 0.74135 0.78802 NaN 1 0 Median 0.94845 0.83868 NaN 1 0 Median 13780000 7634700 6145200 5900400 3322100 2578400 3693000 1835800 1857200 2077800 1263600 814200 0 0 0 2048300 1190300 857930 60355 22852 37503 16793 2647 17518 87360;87361;87362;87363;87364;87365;87366;87367;87368;87369 88749;88750;88751;88752;88753;88754;88755;88756;88757;88758 88750 10 IWSHVHSHLR CNIIQFTKPAETLSKIWSHVHSHLRHPHNW ETLSKIWSHVHSHLRHPHNWVWLTAAQIFG K I W L R H 0 1 0 0 0 0 0 0 3 1 1 0 0 0 0 2 0 1 0 1 0 0 10 0 1270.6683 O75691 O75691 2464 2473 UTP20 Small subunit processome component 20 homolog yes yes 3 0.0059099 48.44 By MS/MS By MS/MS 1 1 0.81284 0.69867 42.169 2 Median NaN NaN NaN 0 0 Median 0.60885 0.51853 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0852 0.94139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1475700 892490 583200 0 0 0 1134300 744600 389690 0 0 0 341400 147890 193510 0 0 0 0 0 0 16794 1691 17519 87370;87371 88759;88760 88759 2 IWSVPNASCVQVVR SQDLVFSASPDATIRIWSVPNASCVQVVRA RIWSVPNASCVQVVRAHESAVTGLSLHATG R I W V R A 1 1 1 0 1 1 0 0 0 1 0 0 0 0 1 2 0 1 0 4 0 0 14 0 1613.8348 Q9UMS4 Q9UMS4 290 303 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 1.2278E-05 88.681 By MS/MS By matching 1 1 0.79643 0.72254 26.712 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86941 0.87276 NaN 1 0 Median 0.72958 0.59818 NaN 1 0 Median 7563100 4297500 3265600 0 0 0 0 0 0 0 0 0 0 0 0 7374600 4183100 3191500 188510 114400 74116 16795 4334 17520 87372;87373 88761;88762 88762 2 IWVFGGANQSGNR RYEHASFIPSCTPDRIWVFGGANQSGNRNC DRIWVFGGANQSGNRNCLQVLNPAFKSWGF R I W N R N 1 1 2 0 0 1 0 3 0 1 0 0 0 1 0 1 0 1 0 1 0 0 13 0 1404.6898 Q5T1S4;Q5T1S5;Q7Z6M1 Q5T1S4 101 113 RABEPK Rab9 effector protein with kelch motifs yes no 2 0.00095942 61.65 By MS/MS By matching 1 1 1.1009 0.98133 8.3533 2 Median 1.048 1.041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1564 0.92504 NaN 1 0 Median 4994400 2773000 2221400 4414100 2459900 1954200 0 0 0 0 0 0 0 0 0 0 0 0 580250 313040 267210 16796 3080 17521 87374;87375 88763 88763 1 IWYLLDGK SSFSRAPQQWATFARIWYLLDGKMQPPGKL QWATFARIWYLLDGKMQPPGKLAAMASIRL R I W G K M 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 1 1 0 0 0 8 0 1006.5488 Q9BYD1;E5RFI2 Q9BYD1 17 24 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 0.0079205 65.038 By MS/MS 1 1.1648 1.1018 NaN 1 Median 1.1648 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305300 1535200 1770200 3305300 1535200 1770200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16797 3888 17522 87376 88764 88764 1 IYADTFGDINYQEFAK SSQYSICFTLGSFAKIYADTFGDINYQEFA YADTFGDINYQEFAKRLWGDIYFNPKTRKF K I Y A K R 2 0 1 2 0 1 1 1 0 2 0 1 0 2 0 0 1 0 2 0 0 0 16 0 1893.8785 Q15029 Q15029 326 341 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 1.5886E-06 89.548 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0822 1.0153 8.8505 7 Median 0.98106 0.97448 17.434 2 0 Median NaN NaN NaN 0 0 Median 0.93052 1.0098 0.75595 2 0 Median 1.3058 1.0957 NaN 1 0 Median 1.0822 1.1073 NaN 1 0 Median 1.1673 1.0004 NaN 1 0 Median 36922000 17670000 19253000 8681000 3885300 4795700 0 0 0 17394000 8722200 8672100 1255100 557490 697560 9381200 4400700 4980400 210710 104030 106680 16798 2917 17523 87377;87378;87379;87380;87381;87382;87383 88765;88766;88767;88768;88769;88770;88771;88772 88768 8 IYAEDPSNNFMPVAGPLVHLSTPR SQEEITLQGHAFEARIYAEDPSNNFMPVAG FMPVAGPLVHLSTPRADPSTRIETGVRQGD R I Y P R A 2 1 2 1 0 0 1 1 1 1 2 0 1 1 4 2 1 0 1 2 0 0 24 0 2624.3057 G5E9X5;F5GYT8;E9PG35;E9PHF7;Q96RQ3 G5E9X5 348 371 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes no 3 0.0093319 19.21 By MS/MS 1 0.60956 0.60259 NaN 1 Median 0.60956 0.60259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2062300 1200500 861760 2062300 1200500 861760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16799 921 17524 87384 88773 88773 1 IYAGQMAVLGR RIIRVDHAGEYGANRIYAGQMAVLGRTSVG GANRIYAGQMAVLGRTSVGPVIQGRGPPCS R I Y G R T 2 1 0 0 0 1 0 2 0 1 1 0 1 0 0 0 0 0 1 1 0 0 11 0 1177.6278 H3BS11;I3L1T0;H3BP28;Q99807;H3BSZ3;H3BTN8 H3BS11 66 76 COQ7 5-demethoxyubiquinone hydroxylase, mitochondrial yes no 2 0.00017328 105.57 By MS/MS By MS/MS 1 1 0.99471 0.8912 13.851 2 Median 0.83507 0.80806 NaN 1 0 Median 1.1849 0.98291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17982000 9193100 8789000 13710000 7273800 6435900 4272500 1919400 2353100 0 0 0 0 0 0 0 0 0 0 0 0 16800 1219 17525 87385;87386 88774;88775;88776 88775 3 IYAMHWGTDSR IQMRTRRTLRGHLAKIYAMHWGTDSRLLVS HLAKIYAMHWGTDSRLLVSASQDGKLIIWD K I Y S R L 1 1 0 1 0 0 0 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 11 0 1335.603 E7EP32;P62879;C9JIS1;C9JXA5;C9JZN1;P62873;F6UT28;B1AKQ8;F6X3N5 P62873 58 68 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2;3 3.9168E-05 143.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 4 1 1.3311 1.2787 19.1 14 Median 1.0761 1.0054 39.665 3 0 Median 1.3488 1.1235 2.1209 2 0 Median 1.3096 1.2863 6.2456 2 0 Median 1.4067 1.1903 15.701 2 0 Median 1.3276 1.3352 6.1614 4 0 Median 1.8793 1.6552 NaN 1 0 Median 146770000 67165000 79609000 99762000 47129000 52634000 11137000 4720800 6416400 12536000 5594100 6941400 2141600 761890 1379700 20808000 8838100 11970000 389540 121340 268190 16801 2603;867 17526 87387;87388;87389;87390;87391;87392;87393;87394;87395;87396;87397;87398;87399;87400 88777;88778;88779;88780;88781;88782;88783;88784;88785;88786;88787;88788;88789;88790;88791;88792;88793 88778 17 IYAPEAPYTSHDK DVRLLVACCLADIFRIYAPEAPYTSHDKLK FRIYAPEAPYTSHDKLKDIFLFITRQLKGL R I Y D K L 2 0 0 1 0 0 1 0 1 1 0 1 0 0 2 1 1 0 2 0 0 0 13 0 1490.7042 Q29RF7;H0Y9L9 Q29RF7 100 112 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.00017219 68.83 By MS/MS By MS/MS 1 2 0.61422 0.60037 16.901 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55351 0.60037 NaN 1 0 Median 0.71098 0.63007 23.574 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13648000 8104800 5543000 0 0 0 0 0 0 4609800 2488400 2121400 9038000 5616400 3421700 0 0 0 0 0 0 16802 3003 17527 87401;87402;87403 88794;88795;88796;88797;88798 88797 5 IYAPEAPYTSPDK DVRLLVACCLADIFRIYAPEAPYTSPDKLK FRIYAPEAPYTSPDKLKDIFMFITRQLKGL R I Y D K L 2 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 2 0 0 0 13 0 1450.698 Q9NTI5 Q9NTI5 90 102 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 1.885E-06 117.67 By MS/MS By MS/MS 2 1 0.76669 0.69136 8.0504 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77714 0.67719 2.9285 2 0 Median NaN NaN NaN 0 0 Median 0.68979 0.59183 NaN 1 0 Median 7123000 3942300 3180700 0 0 0 0 0 0 0 0 0 6162900 3459400 2703500 0 0 0 960130 482950 477180 16803 4107 17528 87404;87405;87406 88799;88800;88801 88800 3 IYAYPSNITSETGFR FNKAKPEPDILEEEKIYAYPSNITSETGFR IYAYPSNITSETGFRTISSLEEIVEKQGDT K I Y F R T 1 1 1 0 0 0 1 1 0 2 0 0 0 1 1 2 2 0 2 0 0 0 15 0 1717.8312 Q8IY95 Q8IY95 212 226 TMEM192 Transmembrane protein 192 yes yes 2 9.5811E-10 113.63 By MS/MS 1 0.84368 0.78866 NaN 1 Median 0.84368 0.78866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9794600 4880600 4914100 9794600 4880600 4914100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16804 3340 17529 87407 88802;88803 88802 2 IYDALDNR SQSSIKSSICLLRGKIYDALDNRTLATYSY ICLLRGKIYDALDNRTLATYSYKEALKLDV K I Y N R T 1 1 1 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 978.47706 Q13042;Q5T8C6;A0A3B3ISD2 Q13042 139 146 CDC16 Cell division cycle protein 16 homolog yes no 2 0.0038087 85.212 By MS/MS By MS/MS 1 1 1.0533 0.97024 16.841 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84715 0.86132 NaN 1 0 Median 1.3097 1.0929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14753000 7985300 6767800 0 0 0 0 0 0 13143000 7320200 5822800 1610100 665120 944950 0 0 0 0 0 0 16805 2779 17530 87408;87409 88804;88805;88806 88805 3 IYDALDVSLIER AWKLICDVSRQELNKIYDALDVSLIERGES LNKIYDALDVSLIERGESFYQDRMNDIVKE K I Y E R G 1 1 0 2 0 0 1 0 0 2 2 0 0 0 0 1 0 0 1 1 0 0 12 0 1405.7453 P54136 P54136 322 333 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 4.8295E-06 133.81 By MS/MS By MS/MS 1 1 1.0526 0.95175 14.473 2 Median 1.1161 1.0543 NaN 1 0 Median 0.99274 0.85917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27607000 12680000 14927000 22321000 10244000 12076000 5286400 2435900 2850500 0 0 0 0 0 0 0 0 0 0 0 0 16806 2480 17531 87410;87411 88807;88808;88809;88810;88811 88808 5 IYDAQNELSAATHLTSK AISNYMNQLYQAMHRIYDAQNELSAATHLT DAQNELSAATHLTSKLLKEYEKQRFPLGGD R I Y S K L 3 0 1 1 0 1 1 0 1 1 2 1 0 0 0 2 2 0 1 0 0 0 17 0 1860.9218 Q9UKG1;C9K0C4;C9JAB0 Q9UKG1 47 63 APPL1 DCC-interacting protein 13-alpha yes no 3 0.068186 16.306 By MS/MS 1 0.88611 0.83799 NaN 1 Median 0.88611 0.83799 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590200 2899900 1690300 4590200 2899900 1690300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16807 4310 17532 87412 88812 88812 1 IYDETQGR DMDCVVTLTTDAARRIYDETQGRQQVLPLD TTDAARRIYDETQGRQQVLPLDSIYKKTLP R I Y G R Q 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 8 0 980.45632 A6NHR9;J3KTL8;A0A2R8YCU7 A6NHR9 1763 1770 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.049701 34.808 By MS/MS By matching 1 1 1.2608 1.2673 7.074 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0806 1.2055 NaN 1 0 Median 1.4711 1.3323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 774470 353120 421360 0 0 0 0 0 0 681220 310280 370940 93251 42835 50416 0 0 0 0 0 0 16808 518 17533 87413;87414 88813 88813 1 IYDLNKPEAEPK DSNYLLTGGQDKLLRIYDLNKPEAEPKEIS LLRIYDLNKPEAEPKEISGHTSGIKKALWC R I Y P K E 1 0 1 1 0 0 2 0 0 1 1 2 0 0 2 0 0 0 1 0 0 0 12 1 1415.7296 Q9Y3F4 Q9Y3F4 126 137 STRAP Serine-threonine kinase receptor-associated protein yes yes 2;3 0.00011989 96.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 0.83779 0.75262 19.882 10 Median 0.66373 0.61855 13.243 2 0 Median 0.76155 0.68761 7.4244 2 0 Median 0.89823 0.96068 3.1753 4 0 Median 0.82186 0.73183 9.3141 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60225000 31586000 28639000 13905000 7672200 6232400 14413000 7640600 6772700 18799000 9470200 9329000 13108000 6803200 6304400 0 0 0 0 0 0 16809 4429 17534 87415;87416;87417;87418;87419;87420;87421;87422;87423;87424 88814;88815;88816;88817;88818;88819;88820;88821;88822 88818 9 IYEAQPEISR RAKSTWLNNIKLLNKIYEAQPEISRAFQTR KLLNKIYEAQPEISRAFQTREFIPLPRLLA K I Y S R A 1 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 10 0 1204.6088 O60287 O60287 400 409 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00087538 90.629 By MS/MS 1 0.79833 0.88201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79833 0.88201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4255000 2414300 1840700 0 0 0 0 0 0 4255000 2414300 1840700 0 0 0 0 0 0 0 0 0 16810 1610 17535 87425 88823 88823 1 IYEDGDDDMKR TETDPSEGLMNVLKKIYEDGDDDMKRTINK VLKKIYEDGDDDMKRTINKAWVESREKQAK K I Y K R T 0 1 0 4 0 0 1 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 11 1 1355.5663 Q9HB71 Q9HB71 198 208 CACYBP Calcyclin-binding protein yes yes 2;3 4.3553E-05 104.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 5 1.1133 1.0576 10.828 15 Median 1.0407 1.0597 10.569 4 0 Median 1.1421 1.0506 1.7975 2 0 Median 1.2525 1.2944 0.38483 2 0 Median 1.2992 1.1501 11.854 2 0 Median NaN NaN NaN 0 0 Median 1.1115 1.009 5.3148 5 0 Median 94254000 41903000 52351000 34594000 15798000 18796000 44563000 19439000 25124000 8076900 3696500 4380400 2748200 1143000 1605200 0 0 0 4271500 1826600 2445000 16811 4016 17536 87426;87427;87428;87429;87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440 88824;88825;88826;88827;88828;88829;88830;88831;88832;88833;88834;88835;88836;88837;88838;88839;88840;88841;88842;88843;88844;88845;88846;88847;88848 88833 25 IYEEAWTK LEKALKPANMLERLKIYEEAWTKYPRGLVP NMLERLKIYEEAWTKYPRGLVPRRLPLNFL K I Y T K Y 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 8 0 1038.5022 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 279 286 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.0061436 72.485 By MS/MS By MS/MS By MS/MS 1 1 1 1.4457 1.2542 25.19 3 Median NaN NaN NaN 0 0 Median 1.2564 1.0979 NaN 1 0 Median 1.6284 1.7874 NaN 1 0 Median 1.4457 1.2542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18292000 7444000 10848000 0 0 0 9251500 4177300 5074200 6942300 2352500 4589800 2098100 914190 1183900 0 0 0 0 0 0 16812 213 17537 87441;87442;87443 88849;88850;88851;88852;88853 88850 5 IYEFPETDDEEENK FKKQIMKEIQEHKIKIYEFPETDDEEENKL KIYEFPETDDEEENKLVKKIKDRLPLAVVG K I Y N K L 0 0 1 2 0 0 5 0 0 1 0 1 0 1 1 0 1 0 1 0 0 0 14 0 1756.7316 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 202 215 SEPT7 Septin-7 yes no 2 5.6681E-07 139.86 By MS/MS By MS/MS 1 2 1.0423 0.9382 12.515 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81009 0.77427 NaN 1 0 Median 1.0906 0.95859 3.0409 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69626000 35855000 33771000 0 0 0 0 0 0 49843000 26708000 23135000 19783000 9147000 10636000 0 0 0 0 0 0 16813 870 17538 87444;87445;87446 88854;88855;88856;88857;88858;88859;88860;88861 88856 8 IYEFPETDDEEENKLVK FKKQIMKEIQEHKIKIYEFPETDDEEENKL EFPETDDEEENKLVKKIKDRLPLAVVGSNT K I Y V K K 0 0 1 2 0 0 5 0 0 1 1 2 0 1 1 0 1 0 1 1 0 0 17 1 2096.979 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 202 218 SEPT7 Septin-7 yes no 2;3 1.3023E-13 120.66 By matching By MS/MS By MS/MS 1 3 4 0.7811 0.81037 26.936 8 Median 0.60935 0.58653 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77368 0.79616 17.658 3 0 Median 0.97246 0.92366 28.526 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 305340000 154630000 150710000 3344400 1479200 1865200 0 0 0 187610000 99902000 87710000 114380000 53244000 61135000 0 0 0 0 0 0 16814 870 17539 87447;87448;87449;87450;87451;87452;87453;87454 88862;88863;88864;88865;88866;88867;88868;88869;88870;88871 88863 10 IYEFPETDDEEENKLVKK FKKQIMKEIQEHKIKIYEFPETDDEEENKL FPETDDEEENKLVKKIKDRLPLAVVGSNTI K I Y K K I 0 0 1 2 0 0 5 0 0 1 1 3 0 1 1 0 1 0 1 1 0 0 18 2 2225.074 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 202 219 SEPT7 Septin-7 yes no 3;4 1.6885E-06 74.772 By MS/MS 2 1.0458 1.0053 0.74622 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0458 1.0053 0.74622 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23258000 10934000 12323000 0 0 0 0 0 0 0 0 0 23258000 10934000 12323000 0 0 0 0 0 0 16815 870 17540 87455;87456 88872;88873;88874 88872 3 IYELAAGGTAVGTGLNTR QVKYAMTRIKAAMPRIYELAAGGTAVGTGL LAAGGTAVGTGLNTRIGFAEKVAAKVAALT R I Y T R I 3 1 1 0 0 0 1 4 0 1 2 0 0 0 0 0 3 0 1 1 0 0 18 0 1762.9214 P07954 P07954 269 286 FH Fumarate hydratase, mitochondrial yes yes 2 1.5183E-24 182.33 By MS/MS By matching By MS/MS 1 1 1 1.2838 1.2307 11.131 3 Median 1.1088 1.0427 NaN 1 0 Median 1.4171 1.2307 NaN 1 0 Median 1.2838 1.2884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35965000 16886000 19080000 29979000 14392000 15587000 1536800 651640 885140 4449200 1841800 2607400 0 0 0 0 0 0 0 0 0 16816 1896 17541 87457;87458;87459 88875;88876;88877 88876 3 IYESHVGISSHEGK YEFKHSRPKKPRSLRIYESHVGISSHEGKV RIYESHVGISSHEGKVASYKHFTCNVLPRI R I Y G K V 0 0 0 0 0 0 2 2 2 2 0 1 0 0 0 3 0 0 1 1 0 0 14 0 1541.7474 Q04446;E9PGM4 Q04446 199 212 GBE1 1,4-alpha-glucan-branching enzyme yes no 2;3 0.00039017 48.608 By MS/MS 2 1.3544 1.1538 30.517 2 Median NaN NaN NaN 0 0 Median 1.3544 1.1538 30.517 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10211000 4531800 5679400 0 0 0 10211000 4531800 5679400 0 0 0 0 0 0 0 0 0 0 0 0 16817 2711 17542 87460;87461 88878;88879 88878 2 IYESIEEAK AEHKATKARLADKNKIYESIEEAKSEAMKE LADKNKIYESIEEAKSEAMKEMEKKLLEER K I Y A K S 1 0 0 0 0 0 3 0 0 2 0 1 0 0 0 1 0 0 1 0 0 0 9 0 1080.5339 O75116;E9PF63;Q14DU5 O75116 721 729 ROCK2 Rho-associated protein kinase 2 yes no 2 0.020731 55.112 By MS/MS 1 0.74501 0.65697 NaN 1 Median NaN NaN NaN 0 0 Median 0.74501 0.65697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1811800 1023100 788690 0 0 0 1811800 1023100 788690 0 0 0 0 0 0 0 0 0 0 0 0 16818 1644 17543 87462 88880 88880 1 IYEYVESR EACDMALELNASKHRIYEYVESRMSFIAPN LNASKHRIYEYVESRMSFIAPNLSIIIGAS R I Y S R M 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 2 1 0 0 8 0 1057.508 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 204 211 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.0033829 98.523 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 1 1.0828 0.9431 20.899 9 Median 0.74977 0.74413 15.68 2 0 Median 1.2831 1.1039 22.262 2 0 Median 0.97279 0.98831 NaN 1 0 Median 1.0879 0.93961 10.917 2 0 Median 1.2962 1.3003 NaN 1 0 Median 1.0828 0.93239 NaN 1 0 Median 32565000 15958000 16607000 4734100 2804400 1929700 5070100 2396900 2673300 7531300 3683200 3848100 6359200 2919600 3439600 5044800 2256500 2788300 3825200 1897500 1927700 16819 3513 17544 87463;87464;87465;87466;87467;87468;87469;87470;87471 88881;88882;88883;88884;88885;88886;88887 88883 7 IYFMAGSSR SLDQYVERMKEKQDKIYFMAGSSRKEAESS KEKQDKIYFMAGSSRKEAESSPFVERLLKK K I Y S R K 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 2 0 0 1 0 0 0 9 0 1030.4906 P14625 P14625 538 546 HSP90B1 Endoplasmin yes yes 2 0.0007314 101.6 By MS/MS By MS/MS By matching By matching 6 5 1 1 1.1925 1.1837 41.198 13 Median 1.1173 1.0648 54.338 6 0 Median 1.4259 1.2339 31.376 5 0 Median NaN NaN NaN 0 0 Median 1.5265 1.3038 NaN 1 0 Median 1.2549 1.3337 NaN 1 0 Median NaN NaN NaN 0 0 Median 189390000 85630000 103760000 111230000 52929000 58302000 75472000 31569000 43903000 0 0 0 612500 225870 386620 2074600 906110 1168500 0 0 0 16820 2006 17545;17546 87472;87473;87474;87475;87476;87477;87478;87479;87480;87481;87482;87483;87484 88888;88889;88890;88891;88892;88893;88894;88895;88896;88897 88891 793 10 IYGADDIELLPEAQHK LKLPVEDKIRIIAQKIYGADDIELLPEAQH YGADDIELLPEAQHKAEVYTKQGFGNLPIC K I Y H K A 2 0 0 2 0 1 2 1 1 2 2 1 0 0 1 0 0 0 1 0 0 0 16 0 1810.9101 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 833 848 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 0.00010219 70.942 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.94667 0.92069 12.91 6 Median 0.92256 0.88787 9.8643 2 0 Median 0.98516 0.8413 10.734 2 0 Median 0.85497 0.93391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3066 1.1332 NaN 1 0 Median 71658000 37215000 34442000 52721000 28048000 24673000 8813700 4122200 4691500 9989800 4979200 5010600 0 0 0 0 0 0 133130 66171 66959 16821 1968 17547 87485;87486;87487;87488;87489;87490 88898;88899;88900;88901;88902;88903 88898 6 IYGESADAVK GVTAIELDEDTGTFRIYGESADAVKKARGF TGTFRIYGESADAVKKARGFLEFVEDFIQV R I Y V K K 2 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 10 0 1051.5186 B4DXZ6;P51114;E7EU85;E9PFF5 B4DXZ6 251 260 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.0016291 63.816 By MS/MS By MS/MS By matching 1 1 1 1.1048 1.023 12.368 3 Median NaN NaN NaN 0 0 Median 1.1048 0.92828 NaN 1 0 Median 0.96253 1.023 NaN 1 0 Median 1.3809 1.1867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12836000 5885600 6950300 0 0 0 8164200 3705400 4458800 4059100 1947000 2112100 612620 233170 379450 0 0 0 0 0 0 16822 608 17548 87491;87492;87493 88904;88905;88906 88905 3 IYGFYDECK FFLLRGNHECASINRIYGFYDECKRRYNIK CASINRIYGFYDECKRRYNIKLWKTFTDCF R I Y C K R 0 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1193.5063 P62140;E7ETD8;H0Y3Y6;P62136;F8VYE8;P36873;F8VR82;F8W0W8 P62136 133 141 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.0034179 65.246 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.3596 1.2347 40.411 4 Median 1.34 1.3153 NaN 1 0 Median 1.3795 1.1589 NaN 1 0 Median 1.0909 1.0462 NaN 1 0 Median 2.6414 2.5646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13879000 6129400 7749300 1351000 634130 716880 6766100 2950000 3816000 5545100 2489400 3055700 216420 55819 160600 0 0 0 0 0 0 16823 2569;1074;2570 17549 87494;87495;87496;87497 88907;88908;88909 88908 3 IYGFYDECKR FFLLRGNHECASINRIYGFYDECKRRYNIK ASINRIYGFYDECKRRYNIKLWKTFTDCFN R I Y K R R 0 1 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 10 1 1349.6074 P62140;E7ETD8;H0Y3Y6;P62136;F8VYE8;P36873;F8VR82;F8W0W8 P62136 133 142 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 0.0020876 58.37 By MS/MS 1 3.74 3.3405 NaN 1 Median NaN NaN NaN 0 0 Median 3.74 3.3405 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8020700 2058700 5962000 0 0 0 8020700 2058700 5962000 0 0 0 0 0 0 0 0 0 0 0 0 16824 2569;1074;2570 17550 87498 88910 88910 1 IYGISFPDPK STYWEGKADMETLQRIYGISFPDPKMLKEW ETLQRIYGISFPDPKMLKEWEKFQEEAKNR R I Y P K M 0 0 0 1 0 0 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 10 0 1135.5914 P26639 P26639 297 306 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0070645 48.283 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.91451 0.8222 7.8699 4 Median 0.82278 0.73646 NaN 1 0 Median 0.94868 0.8291 NaN 1 0 Median 0.88942 0.89138 NaN 1 0 Median 0.9403 0.81537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51008000 26639000 24369000 19517000 10326000 9191800 9934300 4825600 5108700 18809000 10117000 8692200 2746900 1370600 1376200 0 0 0 0 0 0 16825 2147 17551 87499;87500;87501;87502 88911;88912;88913;88914;88915 88911 5 IYGLGSLALYEK AAKYARAERELKPARIYGLGSLALYEKADI PARIYGLGSLALYEKADIKGPEDKKKHLLI R I Y E K A 1 0 0 0 0 0 1 2 0 1 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1325.7231 P36542 P36542 68 79 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 2.5339E-05 96.89 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.4847 1.2383 26.263 6 Median 1.0582 0.95827 NaN 1 0 Median 1.3335 1.1185 NaN 1 0 Median 1.04 0.99816 NaN 1 0 Median 1.6532 1.3954 NaN 1 0 Median 1.8956 1.9348 NaN 1 0 Median 1.6654 1.371 NaN 1 0 Median 89327000 39827000 49501000 61562000 28414000 33148000 20703000 8598700 12104000 2220600 1057800 1162800 187710 77328 110380 2361800 803320 1558400 2291900 875350 1416500 16826 2257 17552 87503;87504;87505;87506;87507;87508 88916;88917;88918;88919;88920;88921;88922;88923;88924 88923 9 IYHLPDAESDEDEDFKEQTR LKKRILDEIEEHNIKIYHLPDAESDEDEDF DAESDEDEDFKEQTRLLKASIPFSVVGSNQ K I Y T R L 1 1 0 4 0 1 4 0 1 1 1 1 0 1 1 1 1 0 1 0 0 0 20 1 2436.0717 Q15019;B5MCX3;H7C2Y0 Q15019 210 229 SEPT2 Septin-2 yes no 4 1.6947E-10 86.479 By MS/MS By matching 1 1 0.99124 0.992 26.121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72361 0.8247 NaN 1 0 Median 1.3579 1.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19383000 10925000 8457500 0 0 0 0 0 0 18394000 10538000 7855300 988750 386550 602200 0 0 0 0 0 0 16827 2914 17553 87509;87510 88925;88926 88926 2 IYHPNIDEK AEYPFKPPKITFKTKIYHPNIDEKGQVCLP ITFKTKIYHPNIDEKGQVCLPVISAENWKP K I Y E K G 0 0 1 1 0 0 1 0 1 2 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1127.5611 P68036;A0A1B0GUS4 P68036 74 82 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 2 0.011134 47.574 By MS/MS By MS/MS 1 1 0.92829 0.83683 7.1093 2 Median 0.84286 0.7958 NaN 1 0 Median 1.0224 0.87997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14126000 7553800 6572200 11364000 6281900 5082100 2761900 1271900 1490100 0 0 0 0 0 0 0 0 0 0 0 0 16828 2631 17554 87511;87512 88927;88928;88929;88930 88928 4 IYHPNVDK EEYPMAAPKVRFMTKIYHPNVDKLGRICLD KVRFMTKIYHPNVDKLGRICLDILKDKWSP K I Y D K L 0 0 1 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 1 1 0 0 8 0 984.50288 P61088;F8VSD4;F8VV71;F8VQQ8;Q5JXB2 P61088 75 82 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 2 0.023904 43.808 By MS/MS By matching 2 1 1.0954 0.99847 13.867 3 Plateau NaN NaN NaN 0 0 Median 1.0247 0.87123 6.5284 2 0 Median 1.1145 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7223800 3445400 3778400 0 0 0 4189700 2092300 2097400 3034100 1353100 1681000 0 0 0 0 0 0 0 0 0 16829 2544 17555 87513;87514;87515 88931;88932 88932 2 IYHPNVDKLGR EEYPMAAPKVRFMTKIYHPNVDKLGRICLD FMTKIYHPNVDKLGRICLDILKDKWSPALQ K I Y G R I 0 1 1 1 0 0 0 1 1 1 1 1 0 0 1 0 0 0 1 1 0 0 11 1 1310.7095 P61088;F8VSD4;F8VV71;F8VQQ8 P61088 75 85 UBE2N Ubiquitin-conjugating enzyme E2 N yes no 2;3 0.00011911 79.693 By MS/MS By MS/MS By MS/MS 2 3 2 1.0584 0.94014 31.445 7 Median 0.77907 0.7692 28.38 2 0 Median 1.0584 0.93373 12.149 3 1 Median 1.4661 1.5275 2.8355 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43801000 20664000 23136000 22471000 11613000 10858000 12784000 5919100 6864800 8545700 3131900 5413800 0 0 0 0 0 0 0 0 0 16830 2544 17556 87516;87517;87518;87519;87520;87521;87522 88933;88934;88935;88936;88937;88938;88939;88940;88941 88938 9 IYIDSNNNPER HEGCEEPATHNALAKIYIDSNNNPERFLRE ALAKIYIDSNNNPERFLRENPYYDSRVVGK K I Y E R F 0 1 3 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1333.6262 A0A087WVQ6;Q00610 A0A087WVQ6 886 896 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 6.2444E-47 220.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 2 1 1.0796 0.94334 17.982 13 Median 1.028 0.98413 11.46 4 0 Median 1.1256 0.96071 4.0156 4 1 Median 0.84097 0.91658 NaN 1 0 Median 0.82951 0.71897 39.646 2 1 Median 0.69267 0.71456 NaN 1 1 Median 1.0051 0.83565 NaN 1 1 Median 179000000 85240000 93763000 52895000 24459000 28436000 90298000 42299000 47999000 15763000 8390900 7372000 8711800 4172500 4539400 8599700 4517600 4082100 2735300 1400900 1334400 16831 44 17557 87523;87524;87525;87526;87527;87528;87529;87530;87531;87532;87533;87534;87535;87536;87537;87538 88942;88943;88944;88945;88946;88947;88948;88949;88950;88951;88952;88953;88954;88955;88956;88957;88958;88959;88960;88961;88962;88963;88964;88965;88966 88960 25 IYIGDQVQK KLELAMLSFFEQFRKIYIGDQVQKSSKLYR FEQFRKIYIGDQVQKSSKLYRRLSEVLGLN K I Y Q K S 0 0 0 1 0 2 0 1 0 2 0 1 0 0 0 0 0 0 1 1 0 0 9 0 1062.571 E7ESC6;Q9UIA9 E7ESC6 561 569 XPO7 Exportin-7 yes no 2 0.00278 84.568 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16832 885 17558 87539 88967 88967 1 IYIPLPEEAAR PWVLDSAIRRRFEKRIYIPLPEEAARAQMF FEKRIYIPLPEEAARAQMFRLHLGSTPHNL R I Y A R A 2 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 11 0 1270.6921 Q9UN37;I3L4J1 Q9UN37 289 299 VPS4A Vacuolar protein sorting-associated protein 4A yes no 2 0.013325 37.476 By matching By matching By MS/MS 1 1 1 1.1577 1.1671 23.506 3 Plateau NaN NaN NaN 0 0 Median 0.84698 0.74808 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9419 0.819 NaN 1 0 Median 1.1577 1.1671 NaN 1 0 Median NaN NaN NaN 0 0 Median 3650000 1654000 1996000 0 0 0 479110 291910 187190 0 0 0 545990 248230 297760 2624900 1113900 1511000 0 0 0 16833 4339 17559 87540;87541;87542 88968;88969 88968 2 IYISNTFSPSK QEAIKKPLTQKRKLRIYISNTFSPSKAEGD RKLRIYISNTFSPSKAEGDSAGTAGTPGGT R I Y S K A 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 3 1 0 1 0 0 0 11 0 1255.6449 J3KMX2;B9EGA3;Q92925 J3KMX2 121 131 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.00041805 107.21 By MS/MS By MS/MS 2 1 0.89883 0.90913 11.15 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87098 0.84787 13.363 2 1 Median 0.89883 0.76525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37271000 18444000 18827000 0 0 0 0 0 0 33938000 16799000 17139000 3333200 1645100 1688100 0 0 0 0 0 0 16834 655 17560 87543;87544;87545 88970;88971 88971 2 IYITLTGVHQVPTENVQVHFTER KISNYGWDQSDKFVKIYITLTGVHQVPTEN HQVPTENVQVHFTERSFDLLVKNLNGKSYS K I Y E R S 0 1 1 0 0 2 2 1 2 2 1 0 0 1 1 0 4 0 1 4 0 0 23 0 2680.3973 Q9HB71 Q9HB71 89 111 CACYBP Calcyclin-binding protein yes yes 3 0.028332 12.802 By matching By MS/MS 1 1 1.0078 0.83715 0.36545 2 Median NaN NaN NaN 0 0 Median 0.98214 0.83931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0342 0.83499 NaN 1 0 Median 3916200 1871100 2045100 0 0 0 659180 317770 341410 0 0 0 0 0 0 0 0 0 3257100 1553400 1703700 16835 4016 17561 87546;87547 88972 88972 1 IYLDGAPNKDLTQD GHRVTYSPRKEKALKIYLDGAPNKDLTQD_ KIYLDGAPNKDLTQD_______________ K I Y Q D - 1 0 1 3 0 1 0 1 0 1 2 1 0 0 1 0 1 0 1 0 0 0 14 1 1561.7624 Q96K76 Q96K76 1362 1375 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 0.012775 41.54 By MS/MS 1 1.038 1.0051 NaN 1 Median 1.038 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9383000 4739900 4643100 9383000 4739900 4643100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16836 3690 17562 87548 88973 88973 1 IYLDMLNVYK ACKAVGHPFVIQLGRIYLDMLNVYKCLSEN IQLGRIYLDMLNVYKCLSENISAAIQANGE R I Y Y K C 0 0 1 1 0 0 0 0 0 1 2 1 1 0 0 0 0 0 2 1 0 0 10 0 1270.6631 O14980 O14980 713 722 XPO1 Exportin-1 yes yes 2 0.027803 34.808 By MS/MS By MS/MS 1 1 1.035 1.0682 14.849 2 Median 0.99423 0.96168 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0775 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16166000 7581700 8584100 12238000 5882700 6355700 0 0 0 3927400 1699000 2228400 0 0 0 0 0 0 0 0 0 16837 1510 17563 87549;87550 88974;88975;88976 88974 3 IYLGQLQR NEIWVRKTSDSTKMRIYLGQLQRGLFVIRR SDSTKMRIYLGQLQRGLFVIRRRSAA____ R I Y Q R G 0 1 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 989.56581 Q9H7L9 Q9H7L9 310 317 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 2 0.0050231 86.086 By matching By MS/MS 1 2 0.83496 0.78037 114.3 3 Median NaN NaN NaN 0 0 Median 0.83496 0.78037 NaN 1 0 Median 0.32007 0.3281 145.34 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56227000 49770000 6456800 0 0 0 166850 82030 84816 56060000 49688000 6372000 0 0 0 0 0 0 0 0 0 16838 3982 17564 87551;87552;87553 88977;88978;88979 88977 3 IYLTADNLVLNLQDESFTR AAQNISKTIATSQNRIYLTADNLVLNLQDE ADNLVLNLQDESFTRSDSLIKGKK______ R I Y T R S 1 1 2 2 0 1 1 0 0 1 4 0 0 1 0 1 2 0 1 1 0 0 19 0 2224.1376 J3KPX7;Q99623 J3KPX7 271 289 PHB2 Prohibitin-2 yes no 2;3 1.516E-18 138.66 By MS/MS By matching 2 1 1.3356 1.1104 13.995 3 Median NaN NaN NaN 0 0 Median 1.3649 1.1349 3.0866 2 0 Median 0.92288 0.89326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65711000 26745000 38966000 0 0 0 65149000 26457000 38692000 562750 288320 274430 0 0 0 0 0 0 0 0 0 16839 1313 17565 87554;87555;87556 88980;88981;88982;88983 88982 4 IYLYLTK QGVINNTVLGYFIGRIYLYLTKVGISPDKL VLGYFIGRIYLYLTKVGISPDKLRFRQHME R I Y T K V 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 1 0 2 0 0 0 7 0 912.53206 P41250 P41250 413 419 GARS Glycine--tRNA ligase yes yes 2 0.0030738 122.79 By MS/MS By matching 2 1 1.2237 1.1864 4.9211 3 Median 1.2329 1.1522 4.1396 2 0 Median NaN NaN NaN 0 0 Median 1.1618 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18249000 8851800 9396900 16146000 7926300 8220000 0 0 0 2102400 925510 1176900 0 0 0 0 0 0 0 0 0 16840 2301 17566 87557;87558;87559 88984;88985 88984 2 IYMLLQR TDLSIADCLLPITSRIYMLLQRLTTVISPP CLLPITSRIYMLLQRLTTVISPPVDVIASC R I Y Q R L 0 1 0 0 0 1 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 0 7 0 935.52626 Q5SRE5 Q5SRE5 593 599 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.018719 80.377 By MS/MS 1 0.82913 0.91004 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82913 0.91004 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6714600 3924700 2789900 0 0 0 0 0 0 6714600 3924700 2789900 0 0 0 0 0 0 0 0 0 16841 3074 17567 87560 88986 88986 1 IYNDDKNTYIR IYIGSQDALIAHYPRIYNDDKNTYIRYELD HYPRIYNDDKNTYIRYELDYIL________ R I Y I R Y 0 1 2 2 0 0 0 0 0 2 0 1 0 0 0 0 1 0 2 0 0 0 11 1 1413.6888 O75533 O75533 1287 1297 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 5.9727E-10 180.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 4 1.0764 1.0741 16.416 14 Median NaN NaN NaN 0 0 Median 1.1984 1.1098 1.3277 2 0 Median 0.9547 1.0821 4.6808 2 0 Median 1.0941 1.0515 2.3936 2 0 Median 0.93472 1.0618 11.65 4 0 Median 1.3021 1.0896 31.578 4 0 Median 127330000 62576000 64753000 0 0 0 28561000 12917000 15644000 23508000 12302000 11207000 10948000 5284500 5663200 53121000 27074000 26047000 11192000 4999500 6192300 16842 1683 17568 87561;87562;87563;87564;87565;87566;87567;87568;87569;87570;87571;87572;87573;87574 88987;88988;88989;88990;88991;88992;88993;88994;88995;88996;88997;88998;88999;89000;89001;89002;89003;89004;89005;89006 88994 20 IYNEIPDINLDVPHSYSVLER SSTITVDQMKRGYERIYNEIPDINLDVPHS DINLDVPHSYSVLERFVEECFQAGIISKQL R I Y E R F 0 1 2 2 0 0 2 0 1 3 2 0 0 0 2 2 0 0 2 2 0 0 21 0 2485.2489 Q53EL6 Q53EL6 408 428 PDCD4 Programmed cell death protein 4 yes yes 3 8.9246E-12 62.966 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.63248 0.57685 48.444 4 Median 0.49492 0.48015 NaN 1 0 Median 0.80827 0.69301 NaN 1 0 Median 0.24756 0.25964 NaN 1 0 Median 0.86481 0.7522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13342000 8736500 4605700 6927100 4547400 2379700 2668900 1383900 1285100 3213900 2534300 679610 532240 270940 261300 0 0 0 0 0 0 16843 3026 17569 87575;87576;87577;87578 89007;89008;89009;89010 89009 4 IYNHPPHPTMSVDEVLEMLQR FSKEIDDEANSYFQRIYNHPPHPTMSVDEV HPTMSVDEVLEMLQRFKDSTIKREREVFNC R I Y Q R F 0 1 1 1 0 1 2 0 2 1 2 0 2 0 3 1 1 0 1 2 0 0 21 0 2505.2144 A5YKK6 A5YKK6 855 875 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3;4 0.015378 16.716 By MS/MS By MS/MS 1 2 0.73842 0.66716 4.3606 3 Median 0.69007 0.68483 NaN 1 0 Median 0.76826 0.64777 4.1705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7870300 4478400 3391900 2562500 1525600 1036900 5307800 2952800 2354900 0 0 0 0 0 0 0 0 0 0 0 0 16844 503 17570 87579;87580;87581 89011;89012;89013 89013 3 IYNMEMAR PCCRRQRESYERCRRIYNMEMARKINFLMR SYERCRRIYNMEMARKINFLMRKNRADPWQ R I Y A R K 1 1 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 8 0 1026.4627 P82921 P82921 63 70 MRPS21 28S ribosomal protein S21, mitochondrial yes yes 2 0.0032009 100.45 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.5328 1.2632 23.723 4 Median 1.0113 0.9834 NaN 1 0 Median 1.5704 1.3331 NaN 1 0 Median 1.7138 1.7371 NaN 1 0 Median 1.4961 1.1969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17209000 7258000 9950600 9625300 4588800 5036500 6737700 2264100 4473600 743790 365300 378490 101870 39822 62050 0 0 0 0 0 0 16845 2657 17571 87582;87583;87584;87585 89014;89015;89016;89017 89016 4 IYNSIYIGSQDALIAHYPR GLFHPARKVRDVYWKIYNSIYIGSQDALIA IYIGSQDALIAHYPRIYNDDKNTYIRYELD K I Y P R I 2 1 1 1 0 1 0 1 1 4 1 0 0 0 1 2 0 0 3 0 0 0 19 0 2193.1219 O75533 O75533 1268 1286 SF3B1 Splicing factor 3B subunit 1 yes yes 3 6.8607E-15 87.287 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.93162 0.8941 31.237 5 Median 0.91041 0.8941 NaN 1 0 Median 0.96543 0.83554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94301 0.97817 0.18316 2 1 Median 0.60478 0.46465 NaN 1 0 Median 13852000 6895300 6956700 2438000 1314100 1123900 1409700 855330 554350 0 0 0 0 0 0 9369600 4318800 5050800 634690 407000 227700 16846 1683 17572 87586;87587;87588;87589;87590 89018;89019 89019 2 IYPHGLVLLDLQSYDGDAQGK LATYTNKNGSFANLRIYPHGLVLLDLQSYD VLLDLQSYDGDAQGKEEIDSILNKVEERMK R I Y G K E 1 0 0 3 0 2 0 3 1 1 4 1 0 0 1 1 0 0 2 1 0 0 21 0 2301.1641 P52788;H7C2R7 P52788 63 83 SMS Spermine synthase yes no 3 4.2014E-14 87.85 By MS/MS 1 0.91648 0.78366 NaN 1 Median NaN NaN NaN 0 0 Median 0.91648 0.78366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5745700 2786500 2959200 0 0 0 5745700 2786500 2959200 0 0 0 0 0 0 0 0 0 0 0 0 16847 2459 17573 87591 89020;89021;89022;89023 89022 4 IYPHGLVLLDLQSYDGDAQGKEEIDSILNK LATYTNKNGSFANLRIYPHGLVLLDLQSYD GDAQGKEEIDSILNKVEERMKELSQDSTGR R I Y N K V 1 0 1 4 0 2 2 3 1 3 5 2 0 0 1 2 0 0 2 1 0 0 30 1 3342.6984 P52788;H7C2R7 P52788 63 92 SMS Spermine synthase yes no 4 0.0002244 26.9 By MS/MS 1 0.81248 0.7324 NaN 1 Median NaN NaN NaN 0 0 Median 0.81248 0.7324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9767500 4962200 4805300 0 0 0 9767500 4962200 4805300 0 0 0 0 0 0 0 0 0 0 0 0 16848 2459 17574 87592 89024;89025 89024 2 IYPLPHMYVIK ACTRRIDTNLNKVSKIYPLPHMYVIKDLVP KVSKIYPLPHMYVIKDLVPDLSNFYAQYKS K I Y I K D 0 0 0 0 0 0 0 0 1 2 1 1 1 0 2 0 0 0 2 1 0 0 11 0 1372.7577 P21912;A0A087WWT1;A0A087WXX8 P21912 127 137 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 3 0.0017177 44.425 By MS/MS By matching 2 1 1.3019 1.1251 33.968 3 Median 0.96912 0.92575 45.322 2 0 Median 1.3144 1.1251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17469000 9129800 8339200 16960000 8941800 8018200 509040 188070 320970 0 0 0 0 0 0 0 0 0 0 0 0 16849 2093 17575 87593;87594;87595 89026;89027;89028 89026 3 IYPSRDEYEAHQER RSLRPDPNFDALISKIYPSRDEYEAHQERV KIYPSRDEYEAHQERVLARINKHNNQQALS K I Y E R V 1 2 0 1 0 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 0 14 1 1791.8176 Q99496;X6RFN3 Q99496 113 126 RNF2 E3 ubiquitin-protein ligase RING2 yes no 3;4 0.00023453 60.196 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 4 2 0.98181 0.96339 19.365 16 Median 1.0192 1.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90836 0.93864 24.232 4 0 Median 1.0806 0.98756 23.689 5 0 Median 0.91803 0.98771 15.344 4 0 Median 1.0631 0.94098 7.5656 2 0 Median 39972000 19944000 20028000 550890 214970 335930 0 0 0 14727000 7680200 7046800 12569000 5681900 6886800 10615000 5638900 4975900 1511000 728180 782810 16850 3748 17576 87596;87597;87598;87599;87600;87601;87602;87603;87604;87605;87606;87607;87608;87609;87610;87611 89029;89030;89031;89032;89033;89034;89035;89036;89037;89038;89039;89040 89039 12 IYPSREEYEAHQDR RSLRPDPNFDALISKIYPSREEYEAHQDRV KIYPSREEYEAHQDRVLIRLSRLHNQQALS K I Y D R V 1 2 0 1 0 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 0 14 1 1791.8176 Q06587 Q06587 110 123 RING1 E3 ubiquitin-protein ligase RING1 yes yes 3;4 0.00064211 44.457 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 4 0.88744 0.887 14.667 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75059 0.80558 7.7783 6 0 Median 1.0457 0.94106 20.16 4 0 Median 0.83444 0.89903 1.951 2 0 Median 1.064 0.93822 14.563 4 0 Median 47100000 24631000 22469000 0 0 0 0 0 0 23206000 12648000 10558000 6089600 2763800 3325800 12478000 6733400 5744300 5326900 2486000 2840900 16851 2727 17577 87612;87613;87614;87615;87616;87617;87618;87619;87620;87621;87622;87623;87624;87625;87626;87627 89041;89042;89043;89044;89045;89046;89047;89048;89049;89050;89051;89052 89046 12 IYPTFLHLHGK RELQCLTPRGRYDIRIYPTFLHLHGKTFDY YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF R I Y G K T 0 0 0 0 0 0 0 1 2 1 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1324.7292 Q08945;E9PMD4 Q08945 218 228 SSRP1 FACT complex subunit SSRP1 yes no 2;3 0.0003215 60.434 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 6 5 1.1228 1.0308 10.647 16 Median 0.93989 0.90103 13.29 2 0 Median 1.2143 1.0965 NaN 1 0 Median 1.0753 1.1414 NaN 1 0 Median 1.166 1.0139 NaN 1 0 Median 1.1126 1.1187 6.8059 6 1 Median 1.1496 0.95869 6.2165 5 0 Median 99687000 46761000 52925000 7386400 3984600 3401800 737480 267580 469900 4574600 2538300 2036300 860760 345600 515160 76127000 34970000 41157000 10000000 4655100 5345400 16852 2743 17578 87628;87629;87630;87631;87632;87633;87634;87635;87636;87637;87638;87639;87640;87641;87642;87643 89053;89054;89055;89056;89057;89058;89059;89060;89061;89062;89063;89064;89065;89066;89067;89068;89069 89059 17 IYQDAYR RIAQRWRELPDSKKKIYQDAYRAEWQVYKE ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K I Y Y R A 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 7 0 927.44503 Q00059;H7BYN3 Q00059 98 104 TFAM Transcription factor A, mitochondrial yes no 2 0.0011659 132.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 1.2704 1.1147 8.5652 8 Median 1.0729 1.012 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0615 1.0194 NaN 1 0 Median 1.4829 1.205 4.5442 2 0 Median 1.0578 1.0649 NaN 1 0 Median 1.4573 1.168 9.5242 3 0 Median 69382000 32500000 36882000 2736900 1319300 1417600 0 0 0 27460000 14137000 13324000 5595000 2267600 3327400 15055000 7215500 7839900 18534000 7561200 10973000 16853 2673 17579 87644;87645;87646;87647;87648;87649;87650;87651 89070;89071;89072;89073;89074;89075;89076;89077;89078;89079 89073 10 IYQEEEMPESGAGSEFNR TWNQARLERDLSNKKIYQEEEMPESGAGSE EEEMPESGAGSEFNRKLREEARRKKYGIVL K I Y N R K 1 1 1 0 0 1 5 2 0 1 0 0 1 1 1 2 0 0 1 0 0 0 18 0 2071.8793 P35269;M0QXD6;M0R0Z3;M0R0R9 P35269 56 73 GTF2F1 General transcription factor IIF subunit 1 yes no 2 2.4729E-11 84.365 By MS/MS By MS/MS 1 1 1.3182 1.181 48.989 2 Median 1.7377 1.6699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99998 0.83524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8425800 3491400 4934500 7076900 2866600 4210300 0 0 0 0 0 0 1349000 624800 724190 0 0 0 0 0 0 16854 2240 17580 87652;87653 89080;89081 89080 2 IYQELVTK AAQIKTLSFLAYIIRIYQELVTKYSQQMVK FLAYIIRIYQELVTKYSQQMVKGMLQLLSN R I Y T K Y 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 8 0 992.55425 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 297 304 TRRAP Transformation/transcription domain-associated protein yes no 2 0.009391 60.91 By MS/MS By MS/MS 1 1 1.0776 1.1019 8.6426 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0705 1.1713 NaN 1 0 Median 1.0849 1.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3554300 1506300 2048000 0 0 0 0 0 0 2065000 792530 1272500 1489300 713800 775470 0 0 0 0 0 0 16855 991 17581 87654;87655 89082;89083;89084 89082 3 IYQGTLGAIK LELRLRDFLLDIEDRIYQGTLGAIKVTDRH DIEDRIYQGTLGAIKVTDRHIWRSALESGR R I Y I K V 1 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1062.6073 Q9NRL2 Q9NRL2 990 999 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.00098255 101.54 By MS/MS 1 1.5388 1.6964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5388 1.6964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15770000 6508200 9261600 0 0 0 0 0 0 15770000 6508200 9261600 0 0 0 0 0 0 0 0 0 16856 4084 17582 87656 89085 89085 1 IYQIYEGTSQIQR FNTEYPVEKLMRDAKIYQIYEGTSQIQRLI AKIYQIYEGTSQIQRLIVAREHIDKYKN__ K I Y Q R L 0 1 0 0 0 3 1 1 0 3 0 0 0 0 0 1 1 0 2 0 0 0 13 0 1597.81 B7Z9I1;Q5T4U5;P11310 B7Z9I1 360 372 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 2.0336E-06 159.83 By MS/MS By MS/MS By MS/MS 2 1 1 1.5502 1.4 33.206 4 Median 1.1516 1.1206 19.576 2 1 Median 1.765 1.523 NaN 1 0 Median 1.9829 2.1589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53282000 23465000 29817000 40742000 19567000 21176000 2917700 1048300 1869400 9622000 2850100 6772000 0 0 0 0 0 0 0 0 0 16857 639 17583 87657;87658;87659;87660 89086;89087;89088;89089;89090;89091 89090 6 IYQLLAK EQIANTETTEDVKGRIYQLLAKASYKKAII TTEDVKGRIYQLLAKASYKKAIILTREATG R I Y A K A 1 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 7 0 847.51674 Q15021;E7EN77 Q15021 520 526 NCAPD2 Condensin complex subunit 1 yes no 2 0.030618 64.776 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 3 1 2 1.1393 1.0085 26.46 9 Median 1.1451 1.1036 NaN 1 1 Median 1.2317 1.0718 8.6086 2 0 Median 0.99528 1.0754 47.415 3 0 Median 1.0764 0.97881 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1237 0.95601 0.53419 2 0 Median 17249000 8034400 9214500 3475700 1722500 1753200 6973900 2911800 4062200 5378100 2747600 2630500 819740 328160 491580 0 0 0 601550 324440 277110 16858 2915 17584 87661;87662;87663;87664;87665;87666;87667;87668;87669 89092;89093;89094 89092 3 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR TGENVEDAFLEAAKKIYQNIQDGSLDLNAA ESGVQHKPSAPQGGRLTSEPQPQREGCGC_ K I Y G R L 3 1 2 2 0 4 1 4 1 2 2 1 0 0 2 3 0 0 1 1 0 0 30 1 3149.549 P61106 P61106 172 201 RAB14 Ras-related protein Rab-14 yes yes 3;4 2.0518E-29 80.359 By MS/MS By MS/MS 3 2 0.73103 0.75787 4.0402 5 Median 0.70831 0.74008 1.4521 3 0 Median 0.8646 0.79891 1.7894 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 174530000 97561000 76973000 136820000 77177000 59646000 37710000 20383000 17327000 0 0 0 0 0 0 0 0 0 0 0 0 16859 2545 17585 87670;87671;87672;87673;87674 89095;89096;89097;89098;89099;89100;89101 89101 7 IYQPEGEEGWLYGVVSHQDSITR IFSRGPYSVQGHRVKIYQPEGEEGWLYGVV GWLYGVVSHQDSITRLMEVSVTESGEIKSV K I Y T R L 0 1 0 1 0 2 3 3 1 2 1 0 0 0 1 2 1 1 2 2 0 0 23 0 2662.2663 Q7LBC6;H0Y9V5 Q7LBC6 205 227 KDM3B Lysine-specific demethylase 3B yes no 3 0.0002428 43.198 By MS/MS 1 0.58451 0.57883 NaN 1 Median 0.58451 0.57883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2695700 1888500 807220 2695700 1888500 807220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16860 3230 17586 87675 89102 89102 1 IYQTEELR LILPVRTLLLKFFSKIYQTEELRSCRFRYR LLKFFSKIYQTEELRSCRFRYRSKVLSRWL K I Y L R S 0 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 8 0 1050.5346 Q9NXF1 Q9NXF1 530 537 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0071131 68.422 By MS/MS 2 0.80325 0.83605 25.174 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80325 0.83605 25.174 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3574500 1646600 1927900 0 0 0 0 0 0 3574500 1646600 1927900 0 0 0 0 0 0 0 0 0 16861 4163 17587 87676;87677 89103 89103 1 IYQTFVALAAQLQSIHENVK NSHITPQDLSMAMQKIYQTFVALAAQLQSI VALAAQLQSIHENVKVLKEQYLGYRKMFLG K I Y V K V 3 0 1 0 0 3 1 0 1 2 2 1 0 1 0 1 1 0 1 2 0 0 20 0 2272.2216 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 339 358 NUPL1 Nucleoporin p58/p45 yes no 3 0.00039938 30.767 By matching By matching By MS/MS By matching 1 1 2 1 1.3711 1.2111 22.919 5 Median 1.709 1.6578 NaN 1 0 Median 1.5753 1.3656 NaN 1 0 Median 0.96386 0.99389 13.89 2 0 Median 1.3711 1.2111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6268400 2916500 3351800 716610 225100 491510 1138100 552390 585740 4334300 2097400 2236800 79376 41628 37748 0 0 0 0 0 0 16862 1247 17588 87678;87679;87680;87681;87682 89104;89105 89105 2 IYQVLDFR WIRFGYDPRKNPDAKIYQVLDFRIRCGMKH RKNPDAKIYQVLDFRIRCGMKHGYAPSDLP K I Y F R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 Q9Y5Q8;Q5T7U1;H7BY84;Q5T7U0 Q9Y5Q8 315 322 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.0023413 113.89 By matching By matching By MS/MS By matching 1 2 1 1 1.302 1.2013 17.383 5 Median 1.302 1.3164 NaN 1 0 Median 1.2432 1.0599 17.716 2 0 Median 0.96619 0.95985 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3386 1.35 NaN 1 0 Median NaN NaN NaN 0 0 Median 31548000 15655000 15893000 2067900 965260 1102600 6520400 2948100 3572200 21488000 11146000 10342000 0 0 0 1471400 595010 876440 0 0 0 16863 4466 17589 87683;87684;87685;87686;87687 89106;89107 89106 2 IYQWINELSSPETR AAPVPTTLAQVDREKIYQWINELSSPETRE KIYQWINELSSPETRENALLELSKKRESVP K I Y T R E 0 1 1 0 0 1 2 0 0 2 1 0 0 0 1 2 1 1 1 0 0 0 14 0 1734.8577 Q92600;F8WBZ6 Q92600 22 35 RQCD1 Cell differentiation protein RCD1 homolog yes no 2 0.00048865 69.01 By MS/MS By MS/MS 1 1 0.73461 0.69371 7.518 2 Median 0.69746 0.6578 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77374 0.73159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5633600 3210600 2423000 3253100 1929000 1324100 0 0 0 2380500 1281600 1098900 0 0 0 0 0 0 0 0 0 16864 3542 17590 87688;87689 89108;89109 89108 2 IYQYDLR MPDGATLAIGSSRGKIYQYDLRMLKSPVKT AIGSSRGKIYQYDLRMLKSPVKTISAHKTS K I Y L R M 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 969.49198 Q8NHV4 Q8NHV4 272 278 NEDD1 Protein NEDD1 yes yes 2 0.028199 50.966 By matching By MS/MS 1 1 1.3482 1.2947 11.999 2 Median NaN NaN NaN 0 0 Median 1.365 1.1894 NaN 1 0 Median 1.3317 1.4093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225400 1790800 2434600 0 0 0 857440 350080 507360 3368000 1440700 1927200 0 0 0 0 0 0 0 0 0 16865 3446 17591 87690;87691 89110 89110 1 IYQYVINK LDIRLTKDNNLTTGKIYQYVINKERKGDYL NNLTTGKIYQYVINKERKGDYLGKTVQVVP K I Y N K E 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 0 1039.5702 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ITH9 P17812 93 100 CTPS1 CTP synthase 1 yes no 2 0.0032372 100.07 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3851 1.1354 10.414 4 Linear 1.2952 1.2064 NaN 1 0 Median 1.375 1.145 NaN 1 0 Median 1.1167 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86446 0.94875 NaN 1 0 Median NaN NaN NaN 0 0 Median 83957000 38428000 45529000 28967000 11977000 16990000 34079000 14110000 19969000 13581000 8815000 4765900 0 0 0 7331000 3526000 3804900 0 0 0 16866 2046 17592 87692;87693;87694;87695 89111;89112;89113;89114;89115 89112 5 IYSHDGTDSPPDADEVVIVLNNFK WILRLRKGRSEDIYRIYSHDGTDSPPDADE PPDADEVVIVLNNFKSKIIKVKVQKKADMV R I Y F K S 1 0 2 4 0 0 1 1 1 2 1 1 0 1 2 2 1 0 1 3 0 0 24 0 2644.2657 Q9NYU2 Q9NYU2 1178 1201 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 3 8.7404E-08 40.381 By MS/MS 1 1.2088 1.0717 NaN 1 Median NaN NaN NaN 0 0 Median 1.2088 1.0717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2511100 1003600 1507400 0 0 0 2511100 1003600 1507400 0 0 0 0 0 0 0 0 0 0 0 0 16867 4179 17593 87696 89116;89117 89117 2 IYSHSLLPVLR CGDQTLGDLLLTPTRIYSHSLLPVLRSGHV TPTRIYSHSLLPVLRSGHVKAFAHITGGGL R I Y L R S 0 1 0 0 0 0 0 0 1 1 3 0 0 0 1 2 0 0 1 1 0 0 11 0 1296.7554 P22102 P22102 661 671 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2;3 0.00014487 76.064 By MS/MS By matching 2 1 1.1393 1.0854 1.5397 3 Median 1.1222 1.0813 2.1551 2 1 Median 1.2079 1.0854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22527000 10494000 12033000 21507000 10006000 11501000 1019200 487380 531790 0 0 0 0 0 0 0 0 0 0 0 0 16868 2098 17594 87697;87698;87699 89118;89119;89120 89119 3 IYSMSLR IFSNSKAYTPSKRSRIYSMSLRLSAFFEEH YTPSKRSRIYSMSLRLSAFFEEHISSVLSD R I Y L R L 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 0 7 0 868.44767 Q8WWQ0 Q8WWQ0 1403 1409 PHIP PH-interacting protein yes yes 2 0.0069988 90.986 By matching By MS/MS 1 1 0.92334 0.91059 12.512 2 Median 0.89511 0.83349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95246 0.99482 NaN 1 0 Median NaN NaN NaN 0 0 Median 15007000 7258200 7748300 9749300 4390700 5358600 0 0 0 0 0 0 0 0 0 5257200 2867500 2389700 0 0 0 16869 3512 17595 87700;87701 89121 89121 1 IYSNSLPPSAAVAASSSLR NNHIGGGAFSVDSPRIYSNSLPPSAAVAAS SLPPSAAVAASSSLRINHANHTGSNHTYLK R I Y L R I 4 1 1 0 0 0 0 0 0 1 2 0 0 0 2 6 0 0 1 1 0 0 19 0 1889.9847 Q9Y2U8 Q9Y2U8 405 423 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 0.00059032 50.088 By MS/MS 1 0.5366 0.56854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5366 0.56854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18026000 11963000 6062300 0 0 0 0 0 0 18026000 11963000 6062300 0 0 0 0 0 0 0 0 0 16870 4392 17596 87702 89122 89122 1 IYSSEAIK ANILIAVNPYFDIPKIYSSEAIKSYQGKSL PYFDIPKIYSSEAIKSYQGKSLGTRPPHVF K I Y I K S 1 0 0 0 0 0 1 0 0 2 0 1 0 0 0 2 0 0 1 0 0 0 8 0 909.48075 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 106 113 MYO6 Unconventional myosin-VI yes no 2 0.017258 68.915 By MS/MS 1 0.98601 0.84549 NaN 1 Median NaN NaN NaN 0 0 Median 0.98601 0.84549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4464200 2348600 2115600 0 0 0 4464200 2348600 2115600 0 0 0 0 0 0 0 0 0 0 0 0 16871 164 17597 87703 89123 89123 1 IYSYVVSRPQPR PPPSRPLQVNTADHRIYSYVVSRPQPRGLL DHRIYSYVVSRPQPRGLLGWGYYLIMLPFR R I Y P R G 0 2 0 0 0 1 0 0 0 1 0 0 0 0 2 2 0 0 2 2 0 0 12 1 1463.7885 Q96CS3 Q96CS3 78 89 FAF2 FAS-associated factor 2 yes yes 2;3 4.6987E-05 88.187 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.81125 0.73121 46.744 7 Median 0.76643 0.77397 8.0383 2 0 Median 0.95822 0.84023 20.663 2 0 Median NaN NaN NaN 0 0 Median 0.78903 0.72596 NaN 1 0 Median 2.2325 2.4212 NaN 1 0 Median 0.66403 0.58707 NaN 1 0 Median 30012000 15180000 14833000 15873000 8665300 7207200 10230000 4927700 5302600 0 0 0 771340 367800 403540 1939800 569800 1370000 1198400 649030 549350 16872 3620 17598 87704;87705;87706;87707;87708;87709;87710 89124;89125;89126;89127;89128 89125 5 IYTFNQSR DTKKILQKYNHCRVKIYTFNQSRYPRINKE YNHCRVKIYTFNQSRYPRINKESLLPVAKD K I Y S R Y 0 1 1 0 0 1 0 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 8 0 1027.5087 A0A087WYS1;E7EUC7;Q16851;C9JNZ1 A0A087WYS1 185 192 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.0059586 73.26 By MS/MS 1 0.32001 0.26905 NaN 1 Median NaN NaN NaN 0 0 Median 0.32001 0.26905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14191000 8490900 5700200 0 0 0 14191000 8490900 5700200 0 0 0 0 0 0 0 0 0 0 0 0 16873 86 17599 87711 89129 89129 1 IYTPVEESSIGK ANHQNGRDTHMRQIKIYTPVEESSIGKFPR QIKIYTPVEESSIGKFPRCTTIDFMMYRSI K I Y G K F 0 0 0 0 0 0 2 1 0 2 0 1 0 0 1 2 1 0 1 1 0 0 12 0 1321.6765 Q9UM13 Q9UM13 158 169 ANAPC10 Anaphase-promoting complex subunit 10 yes yes 2 0.00086735 66.056 By MS/MS By MS/MS 2 2 0.82363 0.72514 122.27 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1449 1.193 71.135 2 1 Median 0.35962 0.27804 136.29 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17933000 9578300 8354600 0 0 0 0 0 0 15730000 8447900 7282300 2202800 1130500 1072400 0 0 0 0 0 0 16874 4332 17600 87712;87713;87714;87715 89130;89131 89131 2 IYTPVEESSIGKFPR ANHQNGRDTHMRQIKIYTPVEESSIGKFPR IYTPVEESSIGKFPRCTTIDFMMYRSIR__ K I Y P R C 0 1 0 0 0 0 2 1 0 2 0 1 0 1 2 2 1 0 1 1 0 0 15 1 1721.8988 Q9UM13 Q9UM13 158 172 ANAPC10 Anaphase-promoting complex subunit 10 yes yes 3 0.023052 30.543 By MS/MS 1 0.94486 0.97985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94486 0.97985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5237800 2676400 2561400 0 0 0 0 0 0 5237800 2676400 2561400 0 0 0 0 0 0 0 0 0 16875 4332 17601 87716 89132 89132 1 IYTSPTWSAFVTDSSWSAR RYKGLNLTEDTYKPRIYTSPTWSAFVTDSS PTWSAFVTDSSWSARKSQLVYQSRRGPLVK R I Y A R K 2 1 0 1 0 0 0 0 0 1 0 0 0 1 1 5 3 2 1 1 0 0 19 0 2161.0116 Q08380 Q08380 408 426 LGALS3BP Galectin-3-binding protein yes yes 2 0.043623 20.663 By MS/MS By matching 1 1 0.83816 0.84884 1.5548 2 Median 0.84509 0.83956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83129 0.85822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1508100 851830 656280 1172900 686550 486380 0 0 0 335170 165270 169900 0 0 0 0 0 0 0 0 0 16876 2739 17602 87717;87718 89133 89133 1 IYVASVHQDLSDDDIK PIIDQLAEEARAFNRIYVASVHQDLSDDDI YVASVHQDLSDDDIKSVFEAFGKIKSCTLA R I Y I K S 1 0 0 4 0 1 0 0 1 2 1 1 0 0 0 2 0 0 1 2 0 0 16 0 1816.8843 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18 A0A0J9YVP6 203 218 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 6.3587E-47 224.05 By matching By MS/MS By MS/MS By matching 3 4 6 1 1.1306 1.0106 16.872 14 Median NaN NaN NaN 0 0 Median 1.0299 0.89011 23.616 3 0 Median 1.1323 1.1054 7.0011 4 0 Median 1.1662 0.98946 9.8478 6 0 Median NaN NaN NaN 0 0 Median 0.79779 0.67084 NaN 1 0 Median 272500000 128720000 143770000 0 0 0 3281000 1482400 1798600 224860000 107730000 117130000 43449000 19122000 24328000 0 0 0 906260 387420 518840 16877 284 17603 87719;87720;87721;87722;87723;87724;87725;87726;87727;87728;87729;87730;87731;87732 89134;89135;89136;89137;89138;89139;89140;89141;89142;89143;89144;89145;89146 89137 13 IYVDDGLISLQVK LDYKNICKVVEVGSKIYVDDGLISLQVKQK SKIYVDDGLISLQVKQKGADFLVTEVENGG K I Y V K Q 0 0 0 2 0 1 0 1 0 2 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1461.8079 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 174 186 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 1.2877E-16 180.07 By MS/MS By MS/MS By MS/MS By MS/MS 8 16 2 4 1.1652 1.0245 39.874 28 Median 1.176 1.0629 20.315 7 3 Median 1.1563 0.99997 51.681 15 3 Median 1.1177 1.0923 16.797 2 0 Median 1.1047 0.97104 17.961 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898600000 1330000000 1568600000 2087700000 954230000 1133500000 776850000 362010000 414840000 31114000 12481000 18633000 2994400 1287600 1706800 0 0 0 0 0 0 16878 2005;1237 17604 87733;87734;87735;87736;87737;87738;87739;87740;87741;87742;87743;87744;87745;87746;87747;87748;87749;87750;87751;87752;87753;87754;87755;87756;87757;87758;87759;87760;87761;87762 89147;89148;89149;89150;89151;89152;89153;89154;89155;89156;89157;89158;89159;89160;89161;89162;89163;89164;89165;89166;89167;89168;89169;89170;89171;89172;89173;89174;89175;89176;89177;89178;89179;89180 89175 33 IYVEIER KLRLIDTLRMVTEGKIYVEIERARLTKTLA LRMVTEGKIYVEIERARLTKTLATIKEQNG K I Y E R A 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 7 0 920.49673 O00232 O00232 136 142 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0030738 122.79 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.2489 1.0803 13.891 6 Median 1.097 1.0301 NaN 1 0 Median 1.3487 1.133 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4126 1.2193 16.955 3 0 Median NaN NaN NaN 0 0 Median 1.1121 0.95836 NaN 1 0 Median 67490000 29862000 37628000 32990000 14714000 18276000 18807000 8341600 10465000 0 0 0 13270000 5612700 7657500 0 0 0 2422900 1193300 1229600 16879 1449 17605 87763;87764;87765;87766;87767;87768 89181;89182;89183;89184;89185 89182 5 IYVGNASVAQDIPK CYSLPSQPCNEVTPRIYVGNASVAQDIPKL RIYVGNASVAQDIPKLQKLGITHVLNAAEG R I Y P K L 2 0 1 1 0 1 0 1 0 2 0 1 0 0 1 1 0 0 1 2 0 0 14 0 1473.7827 P51452 P51452 37 50 DUSP3 Dual specificity protein phosphatase 3 yes yes 2 7.6282E-08 100.55 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.049 1.0029 9.3149 4 Linear 1.054 0.99001 NaN 1 0 Median 0.98505 0.84467 NaN 1 0 Median 1.0156 0.95194 NaN 1 0 Median 0.9846 0.81517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69829000 32017000 37813000 46650000 21025000 25626000 6400900 3217900 3183000 14683000 6718800 7964000 2095500 1055400 1040200 0 0 0 0 0 0 16880 2432 17606 87769;87770;87771;87772 89186;89187;89188;89189;89190 89187 5 IYVGNLPPDIR GGGVIRGPAGNNDCRIYVGNLPPDIRTKDI NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR R I Y I R T 0 1 1 1 0 0 0 1 0 2 1 0 0 0 2 0 0 0 1 1 0 0 11 0 1255.6925 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 18 28 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00013635 106.18 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 9 6 0.82795 0.73153 27.478 23 Median 0.25292 0.23847 NaN 1 0 Median 0.86327 0.71997 1.4228 3 0 Plateau 0.6067 0.58217 22.497 2 0 Median 0.91245 0.76123 1.69 3 0 Median 0.74465 0.75913 18.784 8 2 Median 0.89738 0.73057 9.6986 6 0 Median 316680000 176430000 140250000 1910000 1487700 422300 17651000 10655000 6996300 39297000 23885000 15412000 14724000 7683800 7039900 194640000 108730000 85904000 48458000 23984000 24474000 16881 1337 17607 87773;87774;87775;87776;87777;87778;87779;87780;87781;87782;87783;87784;87785;87786;87787;87788;87789;87790;87791;87792;87793;87794;87795;87796;87797 89191;89192;89193;89194;89195;89196;89197;89198;89199;89200;89201;89202;89203;89204;89205;89206;89207;89208;89209;89210;89211;89212;89213;89214;89215;89216;89217;89218;89219;89220;89221;89222;89223;89224;89225;89226;89227;89228;89229;89230;89231;89232;89233;89234;89235;89236;89237;89238;89239;89240;89241;89242;89243;89244;89245;89246;89247;89248;89249;89250;89251;89252;89253;89254;89255;89256;89257;89258;89259;89260;89261;89262 89211 72 IYVGNLPTDVR MSGWADERGGEGDGRIYVGNLPTDVREKDL GDGRIYVGNLPTDVREKDLEDLFYKYGRIR R I Y V R E 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 2 0 0 11 0 1245.6717 Q13242;H0YIB4;S4R3G0 Q13242 16 26 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00011219 124.23 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 5 1 1.0562 0.99611 73.564 9 Median 1.0573 1.0043 NaN 1 0 Median 0.12297 0.1125 NaN 1 0 Median 1.0562 1.0136 NaN 1 0 Median 1.3473 1.0983 13.959 2 0 Median 0.94271 0.99611 2.5432 3 1 Median 1.1212 0.89241 NaN 1 0 Median 786300000 383230000 403070000 20777000 9287400 11490000 3113700 2651200 462490 108860000 52737000 56126000 11270000 5103400 6166800 520180000 257750000 262440000 122090000 55711000 66384000 16882 2799 17608 87798;87799;87800;87801;87802;87803;87804;87805;87806;87807;87808 89263;89264;89265;89266;89267;89268;89269;89270;89271;89272;89273;89274;89275;89276 89266 14 IYVGNLPTDVREK MSGWADERGGEGDGRIYVGNLPTDVREKDL GRIYVGNLPTDVREKDLEDLFYKYGRIREI R I Y E K D 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 1 2 0 0 13 1 1502.8093 Q13242;H0YIB4;S4R3G0 Q13242 16 28 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2;3 0.00031532 77.379 By MS/MS By MS/MS 1 2 0.98063 1.0405 20.233 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4729 1.3038 NaN 1 0 Median 0.8989 0.95184 12.596 2 0 Median NaN NaN NaN 0 0 Median 26867000 13351000 13516000 0 0 0 0 0 0 0 0 0 1629200 620290 1009000 25238000 12731000 12507000 0 0 0 16883 2799 17609 87809;87810;87811 89277;89278;89279;89280;89281 89278 5 IYVISLAEPR IGSCTQQDVELHVQKIYVISLAEPRLPLQL LHVQKIYVISLAEPRLPLQLDDAVRPEAEG K I Y P R L 1 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 1 0 0 10 0 1159.6601 P14868;C9J7S3;C9JLC1;C9JQM9 P14868 142 151 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.0004183 88.948 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0407 0.89899 14.52 5 Median 0.88441 0.89539 27.404 2 1 Median 1.1636 0.98564 NaN 1 0 Median 0.84666 0.86815 NaN 1 0 Median 1.0407 0.89899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16945000 8240700 8704000 4681500 2441700 2239800 5348400 2219300 3129100 5816000 3039800 2776200 1098800 539930 558830 0 0 0 0 0 0 16884 2012 17610 87812;87813;87814;87815;87816 89282;89283;89284;89285;89286;89287;89288 89285 7 IYVLLRR TQTYQPYNKDWIKEKIYVLLRRQAQQAGK_ NKDWIKEKIYVLLRRQAQQAGK________ K I Y R R Q 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 7 1 931.59672 P84090 P84090 91 97 ERH Enhancer of rudimentary homolog yes yes 2 2.3186E-06 164.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1453 1.3176 14.183 5 Median 1.134 1.1314 NaN 1 0 Median 1.1453 0.97648 NaN 1 0 Median 1.2472 1.3544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1728 1.3276 1.0759 2 0 Median NaN NaN NaN 0 0 Median 77236000 35697000 41540000 22287000 11160000 11128000 7718300 2937300 4781000 5401900 2472800 2929100 0 0 0 41829000 19127000 22702000 0 0 0 16885 2666 17611 87817;87818;87819;87820;87821 89289;89290;89291;89292;89293;89294 89292 6 IYYHVVETGSMGAR HERDTFYIFNHVDIKIYYHVVETGSMGARL KIYYHVVETGSMGARLVAAKLEPKSFKHTH K I Y A R L 1 1 0 0 0 0 1 2 1 1 0 0 1 0 0 1 1 0 2 2 0 0 14 0 1581.761 Q99805 Q99805 216 229 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 3 1.2144E-07 117.07 By MS/MS By MS/MS 1 2 0.88386 0.81881 10.898 3 Plateau 0.75259 0.74561 NaN 1 0 Median 0.99118 0.81763 13.448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21077000 10399000 10679000 7315000 3818800 3496200 13762000 6580100 7182300 0 0 0 0 0 0 0 0 0 0 0 0 16886 3770 17612 87822;87823;87824 89295;89296;89297 89297 3 IYYPDFIVPDPK SKDPSKIPSWLKVNKIYYPDFIVPDPKKAA VNKIYYPDFIVPDPKKAAVWEITGAEFSKS K I Y P K K 0 0 0 2 0 0 0 0 0 2 0 1 0 1 3 0 0 0 2 1 0 0 12 0 1465.7493 P49916 P49916 766 777 LIG3 DNA ligase 3 yes yes 2 0.0034263 46.158 By MS/MS By matching 1 2 0.88376 0.75266 24.09 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63236 0.69221 NaN 1 0 Median 1.1044 0.90518 26.096 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9737900 5715300 4022600 0 0 0 0 0 0 8239300 5048400 3190900 1498700 666870 831790 0 0 0 0 0 0 16887 2406 17613 87825;87826;87827 89298;89299;89300 89299 3 IYYVDHFTR PLPPGWERRVDNMGRIYYVDHFTRTTTWQR VDNMGRIYYVDHFTRTTTWQRPTLESVRNY R I Y T R T 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 0 1 0 2 1 0 0 9 0 1212.5928 A0A590UK95;A0A590UK44;A0A590UJW8;A0A590UJQ1;Q96J02 A0A590UK95 333 341 ITCH E3 ubiquitin-protein ligase Itchy homolog yes no 3 0.011318 33.225 By MS/MS 2 1.0885 1.1608 25.965 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0885 1.1608 25.965 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3812900 1807100 2005800 0 0 0 0 0 0 3812900 1807100 2005800 0 0 0 0 0 0 0 0 0 16888 487 17614 87828;87829 89301 89301 1 KAAAEDVNVTFEDQQK ______________________________ AAAEDVNVTFEDQQKINKFARNTSRITELK K K A Q K I 3 0 1 2 0 2 2 0 0 0 0 2 0 1 0 0 1 0 0 2 0 0 16 1 1791.8639 E9PQY2;Q9NQP4 E9PQY2 7 22 PFDN4 Prefoldin subunit 4 yes no 3 0.0027863 26.808 By MS/MS 1 1.2365 1.2397 NaN 1 Median 1.2365 1.2397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3840000 1789500 2050500 3840000 1789500 2050500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16889 982 17615 87830 89302 89302 1 KAAALEAMK ECIQLEPTFIKGYTRKAAALEAMKDYTKAM IKGYTRKAAALEAMKDYTKAMDVYQKALDL R K A M K D 4 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 9 1 931.51609 P31948;H0YGI8 P31948 434 442 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0032737 72.928 By MS/MS By MS/MS By matching By matching 1 1 2 1 1.1238 1.1222 13.198 5 Median 1.1831 1.1222 NaN 1 0 Median 1.1238 1.0478 NaN 1 0 Median 1.1049 1.2401 11.075 2 0 Median 1.0127 0.93506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20573000 9562400 11011000 3040200 1419600 1620700 17038000 7916000 9121800 400540 181070 219470 94217 45710 48507 0 0 0 0 0 0 16890 2212 17616 87831;87832;87833;87834;87835 89303;89304;89305;89306;89307;89308 89307 6 KAAALEAMKDYTK ECIQLEPTFIKGYTRKAAALEAMKDYTKAM TRKAAALEAMKDYTKAMDVYQKALDLDSSC R K A T K A 4 0 0 1 0 0 1 0 0 0 1 3 1 0 0 0 1 0 1 0 0 0 13 2 1438.749 P31948;H0YGI8 P31948 434 446 STIP1 Stress-induced-phosphoprotein 1 yes no 2;3 7.572E-15 188.15 By MS/MS By MS/MS By matching By matching By matching 6 3 1 1 1 1.0614 1.0387 21.299 12 Median 1.025 1.0387 26.095 6 0 Median 1.2358 1.0877 9.4251 3 0 Median 0.71669 0.82858 NaN 1 0 Median 0.90364 0.79299 NaN 1 0 Median 1.0633 1.1583 NaN 1 0 Median NaN NaN NaN 0 0 Median 149470000 69517000 79948000 123920000 59013000 64910000 20033000 7931500 12102000 2214100 1143500 1070700 558590 238240 320340 2736800 1191200 1545700 0 0 0 16891 2212 17617 87836;87837;87838;87839;87840;87841;87842;87843;87844;87845;87846;87847 89309;89310;89311;89312;89313;89314;89315 89312 7 KAAALEFLNR KTVDLKPDWGKGYSRKAAALEFLNRFEEAK KGYSRKAAALEFLNRFEEAKRTYEEGLKHE R K A N R F 3 1 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 10 1 1131.64 P31948;F5H783;F5GXD8 P31948 78 87 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.00051834 82.287 By matching By MS/MS By matching By MS/MS 1 1 2 1 1.2026 1.1602 15.486 5 Median 1.2026 1.2027 NaN 1 0 Median 1.095 0.99356 NaN 1 0 Median 1.2204 1.3289 19.202 2 0 Median 1.2406 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92709000 41091000 51618000 54104000 23878000 30226000 30057000 14085000 15972000 6889100 2438900 4450100 1658600 688700 969850 0 0 0 0 0 0 16892 2212 17618 87848;87849;87850;87851;87852 89316;89317;89318;89319 89317 4 KAAAQLLQSQAQQSGAQQTK KKKELEEEVNNFQKKKAAAQLLQSQAQQSG LLQSQAQQSGAQQTKKDKDKKK________ K K A T K K 5 0 0 0 0 7 0 1 0 0 2 2 0 0 0 2 1 0 0 0 0 0 20 1 2084.0974 D6RGI3;D6RER5;Q9NVA2;H0Y961;H0Y9G8 D6RGI3 399 418 SEPT11 Septin-11 yes no 3 2.7795E-19 127.59 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.3072 1.2737 15.95 6 Median 1.0789 1.0433 NaN 1 0 Median 1.6372 1.5434 NaN 1 0 Median 1.2477 1.3063 22.194 2 0 Median 1.3072 1.2737 1.6137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44062000 18949000 25114000 1674400 754990 919370 1066400 452590 613810 19930000 8924600 11005000 21391000 8816500 12575000 0 0 0 0 0 0 16893 822 17619 87853;87854;87855;87856;87857;87858 89320;89321;89322;89323;89324;89325;89326;89327;89328;89329;89330;89331 89329 12 KAAAQQLGEVVK RLFILLDTGTTPVTRKAAAQQLGEVVKLHP VTRKAAAQQLGEVVKLHPHELNNLLSKVLI R K A V K L 3 0 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 0 0 2 0 0 12 1 1240.7139 A0A0A0MTH9;O14981 A0A0A0MTH9 23 34 BTAF1 TATA-binding protein-associated factor 172 yes no 3 0.050563 13.404 By MS/MS 1 0.77358 0.88681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77358 0.88681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1334000 631590 702410 0 0 0 0 0 0 1334000 631590 702410 0 0 0 0 0 0 0 0 0 16894 191 17620 87859 89332 89332 1 KAAEEVTLQTGIKR HLAYRMNMCSAGVARKAAEEVTLQTGIKRF RKAAEEVTLQTGIKRFVAGALGPTNKTLSV R K A K R F 2 1 0 0 0 1 2 1 0 1 1 2 0 0 0 0 2 0 0 1 0 0 14 2 1542.873 Q99707;A0A494C064;A0A494C1A2 Q99707 127 140 MTR Methionine synthase yes no 3 0.014104 24.935 By MS/MS 1 1.3571 1.5425 NaN 1 Median 1.3571 1.5425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 843720 262710 581010 843720 262710 581010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16895 3763 17621 87860 89333 89333 1 KAAIISAEGDSK AERARFVVEKAEQQKKAAIISAEGDSKAAE QQKKAAIISAEGDSKAAELIANSLATAGDG K K A S K A 3 0 0 1 0 0 1 1 0 2 0 2 0 0 0 2 0 0 0 0 0 0 12 1 1188.635 P35232;C9JW96 P35232 208 219 PHB Prohibitin yes no 2;3 0.0067631 42.743 By MS/MS By MS/MS By matching 1 3 1 1.2119 1.1636 13.046 4 Median 1.0222 0.99112 NaN 1 0 Median 1.4085 1.2809 1.4182 2 0 Median 1.043 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3520300 1463200 2057100 1752600 840870 911760 1243100 375440 867630 524570 246860 277710 0 0 0 0 0 0 0 0 0 16896 2233 17622 87861;87862;87863;87864;87865 89334;89335;89336;89337 89335 4 KAALDEAQGVGLDSTGYYDQEIYGGSDSR THEDIEAQIREIQGKKAALDEAQGVGLDST TGYYDQEIYGGSDSRFAGYVTSIAATELED K K A S R F 3 1 0 4 0 2 2 5 0 1 2 1 0 0 0 3 1 0 3 1 0 0 29 1 3064.3898 O75533;B4DGZ4;A0A494C1M2 O75533 22 50 SF3B1 Splicing factor 3B subunit 1 yes no 3 1.5314E-62 159.13 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.89891 0.98874 18.908 5 Median 1.1057 1.1501 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84013 0.95277 NaN 1 0 Median 1.0959 1.0532 NaN 1 0 Median 0.89891 0.98874 NaN 1 0 Median 0.78625 0.69868 NaN 1 0 Median 30843000 15422000 15422000 3594900 1532800 2062000 0 0 0 21595000 11059000 10536000 775390 358410 416970 4733400 2392000 2341500 144860 79566 65296 16897 1683 17623 87866;87867;87868;87869;87870 89338;89339;89340 89339 3 KAALEAQNALHNIK PPQSKGCCFVTFYTRKAALEAQNALHNIKT RKAALEAQNALHNIKTLPGMHHPIQMKPAD R K A I K T 4 0 2 0 0 1 1 0 1 1 2 2 0 0 0 0 0 0 0 0 0 0 14 1 1519.8471 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9 E9PC62 101 114 CELF2 CUGBP Elav-like family member 2 yes no 3 0.0019723 48.704 By MS/MS By MS/MS 2 2 1.1601 1.1928 26.171 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90922 0.95744 16.47 2 0 Median 1.5149 1.4367 11.688 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9411800 4326000 5085800 0 0 0 0 0 0 4772600 2588800 2183800 4639300 1737200 2902000 0 0 0 0 0 0 16898 294 17624 87871;87872;87873;87874 89341;89342;89343;89344 89344 4 KAALEAQNALHNMK PPQSKGCCFVTFYTRKAALEAQNALHNMKV RKAALEAQNALHNMKVLPGMHHPIQMKPAD R K A M K V 4 0 2 0 0 1 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 14 1 1537.8035 G5EA30;Q92879;E9PSH0;E9PQK4;E9PKU1 G5EA30 97 110 CELF1 CUGBP Elav-like family member 1 yes no 3 0.00049201 49.31 By matching By MS/MS By MS/MS By MS/MS 1 3 3 2 0.95232 0.95281 20.103 9 Median NaN NaN NaN 0 0 Median 0.88018 0.82968 NaN 1 0 Median 1.0133 1.0582 33.114 3 1 Plateau 1.0856 1.0851 13.027 3 0 Plateau 0.95873 1.0226 11.183 2 2 Median NaN NaN NaN 0 0 Median 52121000 25960000 26160000 0 0 0 1110400 630850 479500 27394000 13940000 13454000 16245000 7687800 8556900 7372000 3701600 3670400 0 0 0 16899 1133 17625 87875;87876;87877;87878;87879;87880;87881;87882;87883 89345;89346;89347;89348;89349;89350;89351;89352;89353 89353 9 KAALEEVER VQKSLAAEEEAARQRKAALEEVERLKAKVE EAARQRKAALEEVERLKAKVEEARRLRERA R K A E R L 2 1 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1043.5611 Q15149 Q15149 2142 2150 PLEC Plectin yes yes 2 0.0164 47.198 By matching By MS/MS By MS/MS 2 1 1 1.0713 1.1368 18.066 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93862 0.99838 2.8852 2 0 Median NaN NaN NaN 0 0 Median 1.1188 1.2683 NaN 1 0 Median 1.611 1.431 NaN 1 0 Median 5929300 2625800 3303500 0 0 0 0 0 0 2059000 1036700 1022300 0 0 0 2638200 1099600 1538600 1232200 489550 742660 16900 2933 17626 87884;87885;87886;87887 89354;89355;89356 89354 3 KAALSALESFLK EVLLKWCAHTNVELKKAALSALESFLKQVS ELKKAALSALESFLKQVSNMVAKNAEMHKN K K A L K Q 3 0 0 0 0 0 1 0 0 0 3 2 0 1 0 2 0 0 0 0 0 0 12 1 1276.7391 P78527 P78527 310 321 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.026236 20.857 By matching By matching By MS/MS 1 1 1 1.1626 1.1026 10.053 3 Median 1.2036 1.3008 NaN 1 0 Median 1.1626 1.1026 NaN 1 0 Median 0.95417 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3201200 1552500 1648600 1466500 634520 831930 391990 233610 158380 1342700 684420 658330 0 0 0 0 0 0 0 0 0 16901 2647 17627 87888;87889;87890 89357;89358 89357 2 KAANLNSIIHR AAGARDSRDNPLRKKKAANLNSIIHRLEKA LRKKKAANLNSIIHRLEKAASREEPIEWEF K K A H R L 2 1 2 0 0 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1235.7099 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 1435 1445 no no 3 0.023911 22.329 By matching By MS/MS By matching 1 1 1 1.1542 1.2189 9.9766 3 Median 1.1542 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1469 1.3645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3737 1.1184 NaN 1 0 Median 95144000 45437000 49707000 92940000 44644000 48296000 0 0 0 2025900 722760 1303100 0 0 0 0 0 0 178100 69728 108370 16902 388 17628 87891;87892;87893 89359 89359 1 KAAQVTIQSSGTFSTK HALSRYGAATFTSARKAAQVTIQSSGTFST AAQVTIQSSGTFSTKFQVENSNRLLLQQVS R K A T K F 2 0 0 0 0 2 0 1 0 1 0 2 0 1 0 3 3 0 0 1 0 0 16 1 1652.8733 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1278 1293 yes yes 2;3 1.6829E-106 234.69 By MS/MS By MS/MS 3 3 0.10873 0.10262 64.339 4 Median 0.11296 0.11737 5.169 2 2 Median 0.06097 0.053375 78.631 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48384000 46850000 1533100 9314600 8600700 713900 39069000 38250000 819230 0 0 0 0 0 0 0 0 0 0 0 0 + 16903 734 17629 87894;87895;87896;87897;87898;87899 89360;89361;89362;89363;89364;89365;89366;89367;89368;89369 89364 10 KAASITSEVFNK YTIAVKEDGELNLMKKAASITSEVFNKFFK LMKKAASITSEVFNKFFKERVMEIVDADEK K K A N K F 2 0 1 0 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 12 1 1293.6929 Q9Y5B9 Q9Y5B9 185 196 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0033049 48.981 By MS/MS 1 1.1371 1.0147 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1371 1.0147 NaN 1 0 Median 3670200 1952000 1718200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3670200 1952000 1718200 16904 4456 17630 87900 89370 89370 1 KAAVEALQSQALHATSQQPLR KRRELEEETNAFNRRKAAVEALQSQALHAT LQSQALHATSQQPLRKDKDKKN________ R K A L R K 5 1 0 0 0 4 1 0 1 0 3 1 0 0 1 2 1 0 0 1 0 0 21 1 2246.2131 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 399 419 SEPT8 Septin-8 yes no 4 5.8114E-09 53.553 By MS/MS By matching 1 1 0.72463 0.71611 14.485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63746 0.6464 NaN 1 0 Median 0.82371 0.79335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12061000 7273000 4788000 0 0 0 0 0 0 10402000 6548200 3853800 1659000 724820 934160 0 0 0 0 0 0 16905 118 17631 87901;87902 89371 89371 1 KAAVEALQSQALHATSQQPLRK KRRELEEETNAFNRRKAAVEALQSQALHAT QSQALHATSQQPLRKDKDKKN_________ R K A R K D 5 1 0 0 0 4 1 0 1 0 3 2 0 0 1 2 1 0 0 1 0 0 22 2 2374.3081 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 399 420 SEPT8 Septin-8 yes no 4 1.7246E-14 88 By MS/MS By MS/MS 1 2 0.68867 0.799 14.583 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68867 0.799 NaN 1 0 Median 0.77228 0.83249 20.35 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54502000 29906000 24596000 0 0 0 0 0 0 26298000 14345000 11953000 28204000 15561000 12643000 0 0 0 0 0 0 16906 118 17632 87903;87904;87905 89372;89373;89374;89375;89376;89377 89376 6 KAAWEAYLSR IISAADRLEAAEMYRKAAWEAYLSRLGV__ AEMYRKAAWEAYLSRLGV____________ R K A S R L 3 1 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 0 10 1 1193.6193 P11172 P11172 468 477 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes yes 2 0.017447 41.54 By MS/MS By matching 1 1 2.9161 2.8645 64.896 2 Median 1.802 1.8103 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.7189 4.5325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9937800 1564900 8372900 2692200 726870 1965400 0 0 0 7245600 838040 6407500 0 0 0 0 0 0 0 0 0 16907 1953 17633 87906;87907 89378 89378 1 KACADATLSQITNNIDPVGR RQEAEQLKNQIRDARKACADATLSQITNNI ATLSQITNNIDPVGRIQMRTRRTLRGHLAK R K A G R I 3 1 2 2 1 1 0 1 0 2 1 1 0 0 1 1 2 0 0 1 0 0 20 1 2143.0692 P62873;F6UT28;B1AKQ8 P62873 23 42 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 3 0.07058 3.9516 By MS/MS 2 1.0151 0.90362 4.3337 2 Median NaN NaN NaN 0 0 Median 1.0151 0.90362 4.3337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6090600 2774300 3316300 0 0 0 6090600 2774300 3316300 0 0 0 0 0 0 0 0 0 0 0 0 16908 2603 17634 87908;87909 89379 89379 1 KACQIFVR GSFGGAGGHAPGVARKACQIFVRNLPFDFT HAPGVARKACQIFVRNLPFDFTWKMLKDKF R K A V R N 1 1 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 1 1020.5539 A0A087X0X3;P52272;M0R2I7;M0QY96 A0A087X0X3 651 658 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0050087 90.986 By matching By matching By MS/MS By matching By MS/MS 1 2 2 1 2 0.96513 0.93697 51.629 8 Median 1.8756 1.8392 NaN 1 0 Median 0.69695 0.60873 38.865 2 0 Median 1.4337 1.5149 67.452 2 0 Median 1.1481 0.93368 NaN 1 0 Median 0.87249 0.99395 25.045 2 0 Median NaN NaN NaN 0 0 Median 14042000 7094200 6947900 376380 110450 265940 846390 403820 442570 1598700 603660 995040 172780 66521 106260 11048000 5909700 5138100 0 0 0 16909 116 17635 87910;87911;87912;87913;87914;87915;87916;87917 89380;89381;89382 89381 3 KADEVLEILK RQLSRFYDDAIVSQKKADEVLEILKTASDD IVSQKKADEVLEILKTASDDRECENQLVLL K K A L K T 1 0 0 1 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1156.6703 O75643;A0A494C1A5 O75643 285 294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00051274 87.258 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.1762 1.1284 7.629 7 Median 1.1794 1.1458 NaN 1 1 Median 1.2804 1.2232 11.41 2 0 Median 0.93588 1.0752 5.2872 2 0 Median 1.2256 1.1524 NaN 1 0 Median 1.0101 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median 69125000 32498000 36627000 8690200 3915900 4774300 11925000 5055400 6869300 36642000 18172000 18470000 3449500 1490600 1958900 8418300 3863800 4554600 0 0 0 16910 1688 17636 87918;87919;87920;87921;87922;87923;87924 89383;89384;89385;89386;89387;89388;89389;89390 89384 8 KADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE YAHVVLRKADIDLTKRAGELTEDEVERVIT R K A T K R 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 8 1 902.5073 P62269 P62269 47 54 RPS18 40S ribosomal protein S18 yes yes 2 0.0065815 80.455 By MS/MS By MS/MS By matching 1 1 1 1.1502 1.0173 9.887 3 Plateau 1.1292 1.1295 NaN 1 0 Median 1.1502 1.0173 NaN 1 0 Median 0.91129 0.92694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16290000 7602400 8687500 6899500 3270600 3628800 8219100 3761900 4457200 1171400 569810 601550 0 0 0 0 0 0 0 0 0 16911 2578 17637 87925;87926;87927 89391;89392;89393;89394 89391 4 KADIDLTKR AIKGVGRRYAHVVLRKADIDLTKRAGELTE AHVVLRKADIDLTKRAGELTEDEVERVITI R K A K R A 1 1 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 9 2 1058.6084 P62269 P62269 47 55 RPS18 40S ribosomal protein S18 yes yes 2 0.043384 47.198 By matching By MS/MS By matching 2 1 2 1.0581 1.1475 7.8986 5 Median 1.0738 1.1205 12.522 2 0 Median 1.1215 1.1475 NaN 1 0 Median 0.98858 1.1176 9.3615 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4660800 2238400 2422400 1736300 860990 875330 2701200 1277700 1423500 223210 99628 123590 0 0 0 0 0 0 0 0 0 16912 2578 17638 87928;87929;87930;87931;87932 89395 89395 1 KADIGVAMGIAGSDVSK VAVTGDGVNDSPALKKADIGVAMGIAGSDV DIGVAMGIAGSDVSKQAADMILLDDNFASI K K A S K Q 3 0 0 2 0 0 0 3 0 2 0 2 1 0 0 2 0 0 0 2 0 0 17 1 1617.8396 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637 P05023 727 743 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 2;3 5.0509E-13 133.47 By MS/MS By MS/MS 5 4 1.12 1.1072 24.579 9 Median 1.12 1.1072 32.349 5 0 Median 1.167 1.1173 8.4657 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138470000 61654000 76816000 96218000 42919000 53299000 42251000 18734000 23517000 0 0 0 0 0 0 0 0 0 0 0 0 16913 1857 17639 87933;87934;87935;87936;87937;87938;87939;87940;87941 89396;89397;89398;89399;89400;89401;89402;89403;89404;89405;89406;89407;89408 89402 13 KADMVNEDLLSDGTSENESGFWDSFK LNNFKSKIIKVKVQKKADMVNEDLLSDGTS DGTSENESGFWDSFKWGFTGQKTEEVKQDK K K A F K W 1 0 2 4 0 0 3 2 0 0 2 2 1 2 0 4 1 1 0 1 0 0 26 1 2920.2709 Q9NYU2 Q9NYU2 1212 1237 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 3 4.4671E-05 27.638 By MS/MS 1 0.99122 1.0077 NaN 1 Median 0.99122 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2152600 1073400 1079100 2152600 1073400 1079100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16914 4179 17640 87942 89409;89410 89410 2 KADNVVNIAR CPLEQLLQGINPRTKKADNVVNIARYLYHG NPRTKKADNVVNIARYLYHGNTNPELAFES K K A A R Y 2 1 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 10 1 1098.6146 Q92621 Q92621 892 901 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0044359 57.859 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 0.97912 1.174 22.23 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97912 1.174 NaN 1 0 Median 1.4052 1.3566 NaN 1 0 Median 0.96417 1.0476 NaN 1 0 Median 1.0533 0.94389 31.862 2 0 Median 12394000 6233600 6160200 0 0 0 0 0 0 6966700 3530700 3436000 1240000 521150 718850 1066100 699940 366190 3121000 1481800 1639200 16915 3547 17641 87943;87944;87945;87946;87947 89411;89412;89413;89414 89413 4 KADPENIKSEGDGTQDIVDK LGETSANAETEQNKKKADPENIKSEGDGTQ NIKSEGDGTQDIVDKSSEKLVRGRTRYQTR K K A D K S 1 0 1 4 0 1 2 2 0 2 0 3 0 0 1 1 1 0 0 1 0 0 20 2 2158.039 Q5UIP0 Q5UIP0 1505 1524 RIF1 Telomere-associated protein RIF1 yes yes 3 0.02029 16.716 By MS/MS 1 0.86263 0.99942 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86263 0.99942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2937800 1483000 1454800 0 0 0 0 0 0 2937800 1483000 1454800 0 0 0 0 0 0 0 0 0 16916 3109 17642 87948 89415 89415 1 KADTEEEFLAFR DTPTSSKPQPKRSLRKADTEEEFLAFRKQT SLRKADTEEEFLAFRKQTPSAGKAMHTPKP R K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1761 1772 MKI67 Antigen KI-67 yes yes 2 4.8831E-06 117.52 By MS/MS By matching 2 1 1.1102 1.2085 10.506 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.985 1.1608 14.489 2 0 Median 1.2518 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15870000 8059200 7811200 0 0 0 0 0 0 15591000 7926200 7664900 279300 132980 146310 0 0 0 0 0 0 16917 2335 17643 87949;87950;87951 89416;89417 89417 2 KADTTTPTPTAILAPGSPASPPGSLEPK APPAQPLAKKKGVKRKADTTTPTPTAILAP APGSPASPPGSLEPKAARLPPMRRESGRPI R K A P K A 4 0 0 1 0 0 1 2 0 1 2 2 0 0 7 3 5 0 0 0 0 0 28 1 2701.4174 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0YDJ7;U3KPW0 H0Y6K2 288 315 BRD2 Bromodomain-containing protein 2 yes no 3 0.0016233 31.632 By MS/MS 1 0.36571 0.40965 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36571 0.40965 NaN 1 1 Median NaN NaN NaN 0 0 Median 3215800 2473800 742070 0 0 0 0 0 0 0 0 0 0 0 0 3215800 2473800 742070 0 0 0 16918 279 17644 87952 89418 89418 1 KADTTTPTTIDPIHEPPSLPPEPK AATPQPVKTKKGVKRKADTTTPTTIDPIHE IDPIHEPPSLPPEPKTTKLGQRRESSRPVK R K A P K T 1 0 0 2 0 0 2 0 1 2 1 2 0 0 7 1 5 0 0 0 0 0 24 1 2581.3275 O60885;M0QZD9 O60885 291 314 BRD4 Bromodomain-containing protein 4 yes no 3 7.8262E-09 63.115 By MS/MS 1 0.17344 0.20053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17344 0.20053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8156700 7000800 1155900 0 0 0 0 0 0 8156700 7000800 1155900 0 0 0 0 0 0 0 0 0 16919 1638 17645 87953 89419 89419 1 KADTTTPTTSAITASR VPPTPPVVKKKGVKRKADTTTPTTSAITAS ADTTTPTTSAITASRSESPPPLSDPKQAKV R K A S R S 3 1 0 1 0 0 0 0 0 1 0 1 0 0 1 2 6 0 0 0 0 0 16 1 1620.8319 Q15059 Q15059 245 260 BRD3 Bromodomain-containing protein 3 yes yes 3 0.00094822 34.909 By MS/MS By MS/MS By matching 1 1 1 0.93261 0.84307 18.865 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70441 0.79993 NaN 1 0 Median 1.1844 1.135 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93261 0.84307 NaN 1 0 Median 5821200 3101900 2719400 0 0 0 0 0 0 4206600 2424300 1782300 763790 374840 388950 0 0 0 850870 302760 548110 16920 2923 17646 87954;87955;87956 89420;89421;89422 89421 2 KADVEEEFLAFR DTPTNTKQRPKRSLKKADVEEEFLAFRKLT SLKKADVEEEFLAFRKLTPSAGKAMHTPKA K K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 12 1 1452.7249 P46013 P46013 1883 1894 MKI67 Antigen KI-67 yes yes 2;3 0.00013131 127.76 By MS/MS By matching 3 2 1.1325 1.1123 9.7642 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99175 1.1807 10.714 3 0 Median 1.1792 1.087 0.81081 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22250000 9671800 12578000 0 0 0 0 0 0 22088000 9604600 12483000 162140 67184 94961 0 0 0 0 0 0 16921 2335 17647 87957;87958;87959;87960;87961 89423;89424;89425;89426;89427 89423 5 KADVEEEFLAFRK DTPTNTKQRPKRSLKKADVEEEFLAFRKLT LKKADVEEEFLAFRKLTPSAGKAMHTPKAA K K A R K L 2 1 0 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 13 2 1580.8199 P46013 P46013 1883 1895 MKI67 Antigen KI-67 yes yes 3 0.00027396 71.933 By MS/MS 2 1.1793 1.5615 3.3894 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1793 1.5615 3.3894 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29294000 12981000 16313000 0 0 0 0 0 0 29294000 12981000 16313000 0 0 0 0 0 0 0 0 0 16922 2335 17648 87962;87963 89428;89429;89430 89429 3 KADVEEEFLALR DTPTSTKQWPKRSLRKADVEEEFLALRKLT SLRKADVEEEFLALRKLTPSAGKAMLTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1153 1164 MKI67 Antigen KI-67 yes no 2;3 9.207E-07 106.49 By MS/MS By matching By MS/MS By matching 4 7 1 1 1.0962 1.1701 19.085 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0337 1.2074 4.8632 4 0 Median 1.1708 1.1251 18.575 7 0 Median 0.91983 1.0442 NaN 1 0 Median 0.70699 0.72629 NaN 1 0 Median 64810000 31000000 33810000 0 0 0 0 0 0 59623000 28362000 31261000 2526500 1189000 1337500 2224100 1146200 1077900 435400 302250 133150 16923 2335 17649 87964;87965;87966;87967;87968;87969;87970;87971;87972;87973;87974;87975;87976 89431;89432;89433;89434;89435;89436;89437;89438 89432 8 KADVEEEFLALRK DTPTSTKQWPKRSLRKADVEEEFLALRKLT LRKADVEEEFLALRKLTPSAGKAMLTPKPA R K A R K L 2 1 0 1 0 0 3 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 2 1546.8355 P46013 P46013 1153 1165 MKI67 Antigen KI-67 yes no 3 2.129E-07 105 By MS/MS By matching By matching 3 1 2 1.0374 1.19 14.579 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1607 1.5069 18.107 3 0 Median 1.0718 1.1997 NaN 1 0 Median 0.97811 1.1513 3.5454 2 0 Median NaN NaN NaN 0 0 Median 98165000 54271000 43894000 0 0 0 0 0 0 92565000 51953000 40613000 297960 161960 136000 5301800 2156900 3144900 0 0 0 16924 2335 17650 87977;87978;87979;87980;87981;87982 89439;89440;89441;89442 89439 3 KADVEEESLALR GTPTIFKPQSKRSLRKADVEEESLALRKRT SLRKADVEEESLALRKRTPSVGKAMDTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2245 2256 MKI67 Antigen KI-67 yes yes 2;3 6.0832E-06 104.52 By MS/MS By MS/MS By MS/MS 5 5 1 1.0782 1.0613 34.392 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1598 1.3686 35.58 4 1 Median 1.0162 0.98107 28.323 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67837000 32322000 35514000 0 0 0 0 0 0 58879000 28363000 30516000 8957900 3959500 4998400 0 0 0 0 0 0 16925 2335 17651 87983;87984;87985;87986;87987;87988;87989;87990;87991;87992;87993 89443;89444;89445;89446;89447;89448;89449;89450;89451;89452;89453;89454;89455 89446 12 KADVEEESLALRK GTPTIFKPQSKRSLRKADVEEESLALRKRT LRKADVEEESLALRKRTPSVGKAMDTPKPA R K A R K R 2 1 0 1 0 0 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 13 2 1486.7991 P46013 P46013 2245 2257 MKI67 Antigen KI-67 yes yes 3 0.00027922 63.727 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1397 1.2317 49.622 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0486 1.3884 16.939 2 0 Median 3.2203 3.6044 NaN 1 1 Median 0.90619 1.0653 NaN 1 0 Median 1.1397 1.1693 NaN 1 0 Median 16856000 6799200 10057000 0 0 0 0 0 0 11214000 4912900 6300900 3155600 747520 2408000 1971100 893540 1077600 515350 245240 270110 16926 2335 17652 87994;87995;87996;87997;87998 89456;89457;89458;89459;89460 89459 5 KADVGFAMGIAGTDVAK VAVTGDGTNDGPALKKADVGFAMGIAGTDV DVGFAMGIAGTDVAKEASDIILTDDNFTSI K K A A K E 4 0 0 2 0 0 0 3 0 1 0 2 1 1 0 0 1 0 0 2 0 0 17 1 1649.8447 P20020;E7ERY9;A0A2R8Y4R4;A0A2U3U055;A0A2U3TZI3;Q01814;A0A2R8Y535;P23634 P23634 795 811 ATP2B1;ATP2B2;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 4 no no 3 0.0023932 42.716 By MS/MS 1 0.33667 0.36673 NaN 1 Median 0.33667 0.36673 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12973000 9194100 3779000 12973000 9194100 3779000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16927 2119;2071 17653 87999 89461 89461 1 KAEAAASALADADADLEER LPSTGGSLSVAAGGKKAEAAASALADADAD AASALADADADLEERLKNLRRD________ K K A E R L 8 1 0 3 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 19 1 1915.9123 O43633;M0R1T5 O43633 197 215 CHMP2A Charged multivesicular body protein 2a yes no 3 2.0418E-05 45.257 By matching By MS/MS By MS/MS 1 2 3 1.1629 1.082 34.913 6 Median NaN NaN NaN 0 0 Median 1.8153 1.9689 NaN 1 0 Median 1.1303 1.2987 41.287 2 0 Median 1.0574 0.93601 18.196 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9646400 4645600 5000800 0 0 0 902900 261300 641600 6358100 3296100 3062100 2385400 1088300 1297200 0 0 0 0 0 0 16928 1579 17654 88000;88001;88002;88003;88004;88005 89462;89463;89464 89462 3 KAEAAVVAVAEK ______________________________ RKRKAEAAVVAVAEKREKLANGGEGMEEAT R K A E K R 5 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 3 0 0 12 1 1184.6765 A0A087WYP2;Q8IZQ5 A0A087WYP2 9 20 C11orf31;SELH Selenoprotein H yes no 2;3 0.0025778 50.292 By MS/MS By MS/MS 1 1 2.556 2.2158 NaN 1 Median NaN NaN NaN 0 0 Median 2.556 2.2158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2228400 357100 1871300 0 0 0 1336600 357100 979550 891720 0 891720 0 0 0 0 0 0 0 0 0 16929 85 17655 88006;88007 89465;89466 89466 2 KAEAAVVAVAEKR ______________________________ KRKAEAAVVAVAEKREKLANGGEGMEEATV R K A K R E 5 1 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 3 0 0 13 2 1340.7776 A0A087WYP2;Q8IZQ5 A0A087WYP2 9 21 C11orf31;SELH Selenoprotein H yes no 2;3 0.00031453 81.865 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.4701 1.6501 7.3101 5 Median 1.4701 1.5927 NaN 1 0 Median 1.8972 1.7195 NaN 1 0 Median 1.4964 1.6888 3.2762 2 0 Median NaN NaN NaN 0 0 Median 1.3637 1.4452 NaN 1 0 Median NaN NaN NaN 0 0 Median 23306000 9106800 14199000 1413600 531420 882210 3406100 1102800 2303300 18083000 7277500 10805000 0 0 0 403290 195100 208190 0 0 0 16930 85 17656 88008;88009;88010;88011;88012 89467;89468;89469;89470;89471;89472;89473 89472 7 KAEAFQLYQEAAQLDMLLEK AIGARARAEAEQMAKKAEAFQLYQEAAQLD QLYQEAAQLDMLLEKLPQVAEEISGPLTSA K K A E K L 4 0 0 1 0 3 3 0 0 0 4 2 1 1 0 0 0 0 1 0 0 0 20 1 2338.1879 O75955;A0A140T9R1;A0A140T9W4;A0A140T974 O75955 341 360 FLOT1 Flotillin-1 yes no 3 2.3215E-06 48.824 By MS/MS By MS/MS 1 1 1.1757 1.1709 10.975 2 Median NaN NaN NaN 0 0 Median 1.1492 1.0835 NaN 1 0 Median 1.2029 1.2654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4333300 1979200 2354100 0 0 0 984800 445180 539620 3348500 1534000 1814500 0 0 0 0 0 0 0 0 0 16931 1712 17657 88013;88014 89474;89475 89474 2 KAEAGAGSATEFQFR RDTYRRSAVPPGADKKAEAGAGSATEFQFR KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K K A F R G 4 1 0 0 0 1 2 2 0 0 0 1 0 2 0 1 1 0 0 0 0 0 15 1 1568.7583 P46783;Q9NQ39 P46783 139 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 1.8202E-86 262.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 3 3 1.1696 1.1036 20.554 16 Median 1.0591 1.0253 6.9209 3 0 Median 1.2268 1.0834 36.751 3 0 Plateau 1.1498 1.2229 2.714 2 0 Median 1.2559 1.1117 1.9401 2 0 Median 1.1841 1.3009 1.8765 3 0 Median 1.2043 1.0704 9.2075 3 1 Median 1013400000 467730000 545700000 546220000 257440000 288780000 232220000 104630000 127590000 127660000 57917000 69740000 33154000 14015000 19139000 51555000 23376000 28179000 22616000 10350000 12266000 16932 2346 17658 88015;88016;88017;88018;88019;88020;88021;88022;88023;88024;88025;88026;88027;88028;88029;88030 89476;89477;89478;89479;89480;89481;89482;89483;89484;89485;89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497;89498;89499;89500;89501;89502;89503;89504;89505;89506;89507;89508;89509;89510;89511;89512;89513;89514;89515 89483 40 KAEAVVNTVDISER RKKRRMLKRLEQTRKKAEAVVNTVDISERE KKAEAVVNTVDISEREKVAQLRSLYKKAGL K K A E R E 2 1 1 1 0 0 2 0 0 1 0 1 0 0 0 1 1 0 0 3 0 0 14 1 1529.8049 Q8IY81 Q8IY81 763 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 0.0045105 28.089 By matching By MS/MS 1 1 1.4401 1.4236 39.49 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97921 1.0768 NaN 1 0 Median 2.118 1.8822 NaN 1 0 Median 7661900 3112700 4549200 0 0 0 0 0 0 0 0 0 0 0 0 5489200 2448400 3040800 2172700 664280 1508400 16933 3338 17659 88031;88032 89516 89516 1 KAEAVVNTVDISEREK RKKRRMLKRLEQTRKKAEAVVNTVDISERE AEAVVNTVDISEREKVAQLRSLYKKAGLGK K K A E K V 2 1 1 1 0 0 3 0 0 1 0 2 0 0 0 1 1 0 0 3 0 0 16 2 1786.9425 Q8IY81 Q8IY81 763 778 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 4.3392E-05 52.862 By MS/MS 2 0.91204 1.0589 6.0932 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91204 1.0589 6.0932 2 0 Median NaN NaN NaN 0 0 Median 10088000 4304500 5784000 0 0 0 0 0 0 0 0 0 0 0 0 10088000 4304500 5784000 0 0 0 16934 3338 17660 88033;88034 89517;89518;89519 89517 3 KAEEATEAQEVVEATPEGACTEPR KKRKRKELRAKEKARKAEEATEAQEVVEAT EVVEATPEGACTEPREPPGLIFNKVEVSED R K A P R E 5 1 0 0 1 1 7 1 0 0 0 1 0 0 2 0 3 0 0 2 0 0 24 1 2601.1864 O75683 O75683 170 193 SURF6 Surfeit locus protein 6 yes yes 3 4.3784E-12 55.588 By MS/MS 1 0.65584 0.67469 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65584 0.67469 NaN 1 0 Median NaN NaN NaN 0 0 Median 6340300 3904600 2435700 0 0 0 0 0 0 0 0 0 0 0 0 6340300 3904600 2435700 0 0 0 16935 1690 17661 88035 89520 89520 1 KAEEELGELEAK YDTRKSRLELQKDVRKAEEELGELEAKLNE DVRKAEEELGELEAKLNENLRRNIERINNE R K A A K L 2 0 0 0 0 0 5 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1344.6773 Q9UQE7 Q9UQE7 684 695 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 9.5298E-52 200.93 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 4 3 0.99678 0.98867 14.271 15 Median 1.3803 1.4588 NaN 1 0 Median 0.97048 0.90981 NaN 1 0 Median 0.84767 0.99426 5.0396 3 2 Median 1.1554 1.1006 14.436 3 0 Median 0.85889 0.94762 13.506 4 1 Median 1.0372 0.93346 10.115 3 0 Median 269950000 136060000 133900000 2366300 1038500 1327700 1372400 690330 682080 118090000 63159000 54929000 22362000 9833800 12528000 115330000 56532000 58797000 10437000 4803600 5633300 16936 4362 17662 88036;88037;88038;88039;88040;88041;88042;88043;88044;88045;88046;88047;88048;88049;88050 89521;89522;89523;89524;89525;89526;89527;89528;89529;89530;89531;89532;89533;89534;89535;89536;89537;89538;89539 89525 19 KAEEIANEMIEAAK FDFTAKGAMSTQQIKKAEEIANEMIEAAKA KKAEEIANEMIEAAKAVYTQDCPLAAAKAI K K A A K A 4 0 1 0 0 0 4 0 0 2 0 2 1 0 0 0 0 0 0 0 0 0 14 1 1545.7709 P49588;H3BPK7 P49588 651 664 AARS Alanine--tRNA ligase, cytoplasmic yes no 2;3 1.774E-17 192.86 By MS/MS By MS/MS By matching 2 4 1 1.0736 1.0629 12.978 7 Median 0.98478 1.0274 4.232 2 0 Median 1.2529 1.1882 14.972 4 0 Median 0.92868 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57427000 26854000 30573000 46862000 22218000 24644000 8510500 3547900 4962600 2054400 1088500 965830 0 0 0 0 0 0 0 0 0 16937 2385 17663 88051;88052;88053;88054;88055;88056;88057 89540;89541;89542;89543;89544 89542 5 KAEEKYEVLENK EESEETLKNTKEIQRKAEEKYEVLENKMKN IQRKAEEKYEVLENKMKNAEAERERELKDA R K A N K M 1 0 1 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 1 1 0 0 12 2 1478.7617 O95347 O95347 768 779 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 0.00051421 126.19 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 1 1 0.9076 0.95737 12.579 10 Median 0.88115 0.92367 NaN 1 0 Median 1.0945 1.0395 17.142 2 1 Median 1.0101 1.2138 14.028 3 0 Plateau 0.83802 0.85819 11.412 2 0 Median 0.86597 1.0137 NaN 1 0 Median 0.90675 0.98522 NaN 1 0 Median 43936000 21171000 22766000 11786000 5617000 6168800 14915000 6737500 8177100 11513000 6015800 5496900 3006500 1592400 1414100 2041200 914760 1126400 675580 293310 382270 16938 1766 17664 88058;88059;88060;88061;88062;88063;88064;88065;88066;88067 89545;89546;89547;89548;89549;89550;89551;89552;89553 89549 9 KAEELTSQNIQLSNEVTLLR RCRQKRKLWVSSLEKKAEELTSQNIQLSNE TSQNIQLSNEVTLLRNEVAQLKQLLLAHKD K K A L R N 1 1 2 0 0 2 3 0 0 1 4 1 0 0 0 2 2 0 0 1 0 0 20 1 2285.2227 P17544;K7ELQ4 P17544 374 393 ATF7 Cyclic AMP-dependent transcription factor ATF-7 yes no 3 1.2013E-11 97.271 By MS/MS 1 0.78645 0.87817 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78645 0.87817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3868700 1808200 2060600 0 0 0 0 0 0 3868700 1808200 2060600 0 0 0 0 0 0 0 0 0 16939 2042 17665 88068 89554;89555 89555 2 KAEEVQAWAQR EEREQEQRQALEQARKAEEVQAWAQRKERE EQARKAEEVQAWAQRKEREVLQLQEEVKNF R K A Q R K 3 1 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 11 1 1314.668 Q9BYN8 Q9BYN8 142 152 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 3 0.061279 22.232 By MS/MS 1 1.2982 1.3318 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2982 1.3318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1567500 670220 897270 0 0 0 0 0 0 1567500 670220 897270 0 0 0 0 0 0 0 0 0 16940 3894 17666 88069 89556 89556 1 KAEFEEQNVR SAISDHLKSKTHTKRKAEFEEQNVRKKQRP THTKRKAEFEEQNVRKKQRPLTASLQCNST R K A V R K 1 1 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 10 1 1248.6099 Q9UFW8;C9JUJ0 Q9UFW8 71 80 CGGBP1 CGG triplet repeat-binding protein 1 yes no 3 9.3774E-05 78.655 By MS/MS By MS/MS 1 1 0.67337 0.64312 6.8438 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65507 0.67501 NaN 1 1 Median 0.69219 0.61274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4000800 2308200 1692700 0 0 0 0 0 0 2791300 1617000 1174200 1209600 691160 518420 0 0 0 0 0 0 16941 4260 17667 88070;88071 89557;89558;89559 89558 3 KAEIGIAMGSGTAVAK TAMTGDGVNDAPALKKAEIGIAMGSGTAVA AEIGIAMGSGTAVAKTASEMVLADDNFSTI K K A A K T 4 0 0 0 0 0 1 3 0 2 0 2 1 0 0 1 1 0 0 1 0 0 16 1 1502.8127 P16615;H7C5W9;O14983;Q93084 P16615 712 727 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2;3 1.0682E-26 194.23 By MS/MS By MS/MS 7 8 1.1446 1.1748 16.473 15 Median 1.1512 1.1991 16.48 7 0 Median 1.1381 1.0813 13.499 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 217790000 97417000 120370000 74825000 35698000 39127000 142960000 61719000 81242000 0 0 0 0 0 0 0 0 0 0 0 0 16942 2031 17668 88072;88073;88074;88075;88076;88077;88078;88079;88080;88081;88082;88083;88084;88085;88086 89560;89561;89562;89563;89564;89565;89566;89567;89568;89569;89570;89571;89572;89573;89574;89575;89576;89577;89578;89579 89574 20 KAEIMESIK GDARIDRQESSRQQRKAEIMESIKRLYPGS SSRQQRKAEIMESIKRLYPGSVYGRLIDLC R K A I K R 1 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 0 0 0 0 0 0 9 1 1047.5634 Q14683;G8JLG1 Q14683 500 508 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.015909 56.548 By MS/MS 1 0.94233 1.0117 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94233 1.0117 NaN 1 1 Median NaN NaN NaN 0 0 Median 5839000 2932000 2907000 0 0 0 0 0 0 0 0 0 0 0 0 5839000 2932000 2907000 0 0 0 16943 2889 17669 88087 89580 89580 1 KAEIMESIKR GDARIDRQESSRQQRKAEIMESIKRLYPGS SRQQRKAEIMESIKRLYPGSVYGRLIDLCQ R K A K R L 1 1 0 0 0 0 2 0 0 2 0 2 1 0 0 1 0 0 0 0 0 0 10 2 1203.6645 Q14683;G8JLG1 Q14683 500 509 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.00011738 141.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 5 5 0.96862 1.0933 18.472 20 Median 1.0218 1.0801 10.948 2 0 Median 1.4704 1.4567 2.8452 2 0 Median 0.87388 0.99576 9.0699 3 0 Plateau 1.127 1.2615 39.84 3 0 Median 0.92044 1.0821 12.672 5 0 Median 1.0296 0.9883 9.5185 5 0 Median 91729000 45851000 45878000 3926600 1697700 2228900 7094700 2798400 4296300 11450000 6379900 5070300 3327600 1511200 1816400 49194000 25711000 23483000 16736000 7752400 8983100 16944 2889 17670;17671 88088;88089;88090;88091;88092;88093;88094;88095;88096;88097;88098;88099;88100;88101;88102;88103;88104;88105;88106;88107 89581;89582;89583;89584;89585;89586;89587;89588;89589;89590;89591;89592;89593;89594;89595;89596;89597;89598;89599;89600;89601 89595 1579 21 KAELLDNEKPAAVVAPITTGYTVK IETEIKNKMQQKSQKKAELLDNEKPAAVVA PAAVVAPITTGYTVKISNYGWDQSDKFVKI K K A V K I 4 0 1 1 0 0 2 1 0 1 2 3 0 0 2 0 3 0 1 3 0 0 24 2 2527.3898 Q9HB71 Q9HB71 51 74 CACYBP Calcyclin-binding protein yes yes 3;4 8.4602E-30 119.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1 0.82396 0.86759 24.983 10 Median 0.74688 0.78446 14.325 4 0 Median 0.7747 0.75809 19.846 2 0 Median 0.82465 0.93048 3.329 2 0 Median 0.93845 0.8629 NaN 1 0 Median 1.4344 1.5694 NaN 1 0 Median NaN NaN NaN 0 0 Median 206790000 115580000 91202000 156640000 90725000 65919000 10408000 5245200 5163300 31629000 16021000 15608000 5086300 2489800 2596500 3017300 1103000 1914400 0 0 0 16945 4016 17672 88108;88109;88110;88111;88112;88113;88114;88115;88116;88117 89602;89603;89604;89605;89606;89607;89608;89609;89610;89611;89612;89613;89614;89615 89606 14 KAENAEGQTPAIGPDGEPLDETSQMSDLPVK AAQVAKEKKKKKKKKKAENAEGQTPAIGPD EPLDETSQMSDLPVKVIHVESGKILTGTDA K K A V K V 3 0 1 3 0 2 4 3 0 1 2 2 1 0 4 2 2 0 0 1 0 0 31 1 3223.5191 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y7R0 P51532 588 618 SMARCA4 Transcription activator BRG1 yes no 3 6.8328E-22 72.103 By MS/MS By matching 1 1 0.54781 0.5687 16.585 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43709 0.50577 NaN 1 0 Median 0.68656 0.63946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10719000 6661900 4057600 0 0 0 0 0 0 10153000 6392600 3760300 566530 269260 297270 0 0 0 0 0 0 16946 366 17673 88118;88119 89616 89616 1 KAEPMQWASLELPAAK SYVTMTATKIEITMRKAEPMQWASLELPAA AEPMQWASLELPAAKKQEKQKDATTD____ R K A A K K 4 0 0 0 0 1 2 0 0 0 2 2 1 0 2 1 0 1 0 0 0 0 16 1 1768.9182 Q9UHD1;E9PHZ2 Q9UHD1 306 321 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 3 0.021031 17.489 By MS/MS By matching 3 2 0.85083 0.79083 34.443 4 Median 0.85083 0.79083 20.985 2 0 Median 1.0564 0.93209 53.372 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31504000 16649000 14855000 30207000 15987000 14220000 1297100 662410 634650 0 0 0 0 0 0 0 0 0 0 0 0 16947 4275 17674 88120;88121;88122;88123;88124 89617 89617 1 KAESGWFHVEEDR KAPEPTDARKKGEKRKAESGWFHVEEDRNT KRKAESGWFHVEEDRNTNVYVSGLPPDITV R K A D R N 1 1 0 1 0 0 3 1 1 0 0 1 0 1 0 1 0 1 0 1 0 0 13 1 1588.727 O43719;Q5H918;Q5H919 O43719 119 131 HTATSF1 HIV Tat-specific factor 1 yes no 3 0.00089037 43.184 By MS/MS By MS/MS 1 1 1.1389 1.1902 25.818 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87261 0.99161 NaN 1 0 Median 1.4866 1.4286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5719500 2515300 3204200 0 0 0 0 0 0 2911700 1608300 1303400 2807900 907040 1900800 0 0 0 0 0 0 16948 1586 17675 88125;88126 89618;89619 89619 1 KAEVEGKDLPEHAVLK VVCPKDEDYKQRTQKKAEVEGKDLPEHAVL AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K K A L K M 2 0 0 1 0 0 3 1 1 0 2 3 0 0 1 0 0 0 0 2 0 0 16 2 1761.9625 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 620 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3;4 2.1093E-10 104.21 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 8 6 0.84768 0.94719 11.719 20 Median 0.89858 0.94194 12.861 3 0 Median NaN NaN NaN 0 0 Median 0.8453 1.0311 17.738 3 0 Median NaN NaN NaN 0 0 Median 0.82379 0.9299 6.6631 8 0 Median 1.0233 1.0317 11.652 6 0 Median 343650000 178160000 165490000 24820000 12792000 12028000 0 0 0 9209900 5165600 4044300 0 0 0 268730000 140280000 128440000 40894000 19920000 20974000 16949 2680 17676 88127;88128;88129;88130;88131;88132;88133;88134;88135;88136;88137;88138;88139;88140;88141;88142;88143;88144;88145;88146 89620;89621;89622;89623;89624;89625;89626;89627;89628;89629;89630;89631;89632;89633;89634;89635;89636;89637;89638;89639;89640;89641;89642;89643;89644;89645;89646;89647;89648;89649 89647 30 KAEVTLDGVWPTDK LDDNQKPPVGEGLNRKAEVTLDGVWPTDKT RKAEVTLDGVWPTDKTSRCLIKSPDRLADI R K A D K T 1 0 0 2 0 0 1 1 0 0 1 2 0 0 1 0 2 1 0 2 0 0 14 1 1557.8039 P52948;A0A3B3ITD8 P52948 818 831 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 0.00019307 59.709 By MS/MS 2 1.1068 1.2641 23.668 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1068 1.2641 23.668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17812000 8090300 9721400 0 0 0 0 0 0 17812000 8090300 9721400 0 0 0 0 0 0 0 0 0 16950 2462 17677 88147;88148 89650;89651;89652;89653 89650 4 KAEVVQVIR QRRAENLKRRLENERKAEVVQVIRNPAKLK RLENERKAEVVQVIRNPAKLKRAKKKQLRS R K A I R N 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1040.6342 Q9H6F5 Q9H6F5 315 323 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 5.6739E-08 169.09 By matching By matching By matching By MS/MS By MS/MS 1 1 2 4 6 1.1407 1.0712 17.296 14 Median NaN NaN NaN 0 0 Median 1.0048 0.91783 NaN 1 0 Median 1.2861 1.4257 NaN 1 0 Median 1.2994 1.1351 5.8072 2 0 Median 1.1973 1.2578 11.193 4 0 Median 1.0797 0.93145 7.3946 6 0 Median 41118000 18972000 22146000 0 0 0 971580 469500 502080 1009200 435270 573930 778660 330340 448320 20430000 8947300 11483000 17928000 8789100 9138800 16951 3974 17678 88149;88150;88151;88152;88153;88154;88155;88156;88157;88158;88159;88160;88161;88162 89654;89655;89656;89657;89658;89659 89655 6 KAFDMISQR LPRGRTFTLKLTEPRKAFDMISQRSAGGRP KLTEPRKAFDMISQRSAGGRPGSGPQLGTG R K A Q R S 1 1 0 1 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 9 1 1094.5543 O14908;K7ESN1 O14908 216 224 GIPC1 PDZ domain-containing protein GIPC1 yes no 2 0.0086936 55.549 By MS/MS By MS/MS By matching 1 1 1 1.3496 1.1819 69.199 3 Median 1.5036 1.611 NaN 1 0 Median 0.45736 0.42904 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3496 1.1819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11236000 5184800 6050800 6035000 2392300 3642700 3457700 1978100 1479500 0 0 0 1742800 814350 928450 0 0 0 0 0 0 16952 1502 17679 88163;88164;88165 89660;89661 89661 2 KAFLNAIMR VGGNIEVLGFNARQRKAFLNAIMRYGMPPQ FNARQRKAFLNAIMRYGMPPQDAFTTQWLV R K A M R Y 2 1 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 9 1 1062.6008 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;Q8TDI0;K7EMY3 Q14839 1422 1430 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.0007756 115.69 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1.1686 1.2026 11.592 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0384 1.2444 7.3903 2 0 Median 1.2803 1.214 6.5495 4 0 Median 0.90124 1.0216 9.0655 2 0 Median 1.1686 1.0195 NaN 1 0 Median 65625000 31059000 34565000 0 0 0 0 0 0 39267000 18274000 20993000 7977500 3496900 4480600 16909000 8652600 8256600 1470700 635670 834990 16953 246;3471 17680;17681 88166;88167;88168;88169;88170;88171;88172;88173;88174 89662;89663;89664;89665;89666;89667;89668;89669;89670 89663 98 8 KAFMGPLK TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE FQTMEEKKAFMGPLKKDRIAKEEGA_____ K K A L K K 1 0 0 0 0 0 0 1 0 0 1 2 1 1 1 0 0 0 0 0 0 0 8 1 890.50479 P39023;G5E9G0 P39023 386 393 RPL3 60S ribosomal protein L3 yes no 2 0.0093476 70.67 By MS/MS By MS/MS 3 2 1.3682 1.3064 21.157 5 Median 1.0168 1.1081 27.123 3 0 Median 1.4297 1.3298 2.5102 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24077000 10615000 13461000 10294000 5139600 5154600 13783000 5475800 8306700 0 0 0 0 0 0 0 0 0 0 0 0 16954 2281 17682 88175;88176;88177;88178;88179 89671;89672;89673;89674;89675;89676 89671 6 KAFSGYLGTDQSK AFAPICNPVLCPWGKKAFSGYLGTDQSKWK GKKAFSGYLGTDQSKWKAYDATHLVKSYPG K K A S K W 1 0 0 1 0 1 0 2 0 0 1 2 0 1 0 2 1 0 1 0 0 0 13 1 1400.6936 P10768;X6RA14;H7BZT7;U3KQT1 P10768 186 198 ESD S-formylglutathione hydrolase yes no 2;3 1.8443E-06 148.78 By MS/MS By MS/MS By matching 2 2 1 1.0744 1.0398 15.206 5 Median 0.98353 0.95391 12.191 2 0 Median 1.2859 1.1582 8.3 2 0 Median NaN NaN NaN 0 0 Median 0.97675 0.85766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54902000 25712000 29190000 42682000 20476000 22206000 11540000 4959200 6581000 0 0 0 679960 277170 402790 0 0 0 0 0 0 16955 1946 17683 88180;88181;88182;88183;88184 89677;89678;89679;89680;89681;89682;89683;89684 89684 8 KAFTELQAK ______________________________ VDLELKKAFTELQAKVIDTQQKVKLADIQI K K A A K V 2 0 0 0 0 1 1 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 9 1 1034.576 O60925;E5RGS4 O60925 11 19 PFDN1 Prefoldin subunit 1 yes no 2 0.0071019 58.981 By matching By MS/MS 1 1 1.1892 1.0715 12.496 2 Median 1.0474 0.98085 NaN 1 0 Median 1.3501 1.1704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4216900 1883200 2333600 1307400 646010 661400 2909500 1237200 1672200 0 0 0 0 0 0 0 0 0 0 0 0 16956 841 17684 88185;88186 89685;89686 89686 2 KAGFFLPPDEYVVTDPEQEK RGIPILSLDWLHQSRKAGFFLPPDEYVVTD LPPDEYVVTDPEQEKNFGFSLQDALSRARE R K A E K N 1 0 0 2 0 1 3 1 0 0 1 2 0 2 3 0 1 0 1 2 0 0 20 1 2308.1263 Q14676 Q14676 1958 1977 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.002242 37.112 By MS/MS 1 0.78 0.89947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78 0.89947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4140100 2371700 1768400 0 0 0 0 0 0 4140100 2371700 1768400 0 0 0 0 0 0 0 0 0 16957 2887 17685 88187 89687 89687 1 KAGIFQSVK FYRNYDVMKDFEEMRKAGIFQSVK______ DFEEMRKAGIFQSVK_______________ R K A V K - 1 0 0 0 0 1 0 1 0 1 0 2 0 1 0 1 0 0 0 1 0 0 9 1 976.57057 P09669 P09669 67 75 COX6C Cytochrome c oxidase subunit 6C yes yes 2 2.8659E-05 155.58 By matching By MS/MS By matching By matching By matching 1 2 2 1 1 0.85964 0.6785 21.512 7 Median 0.68851 0.64477 NaN 1 0 Median 1.1282 0.88525 17.018 2 0 Median 0.68406 0.59174 19.349 2 0 Median NaN NaN NaN 0 0 Median 0.93857 0.67157 NaN 1 0 Median 0.85964 0.86086 NaN 1 0 Median 53949000 28841000 25108000 22392000 13112000 9279900 26142000 12655000 13488000 2204500 1358200 846220 0 0 0 1800200 953520 846640 1409500 762160 647360 16958 1921 17686 88188;88189;88190;88191;88192;88193;88194 89688;89689;89690 89688 3 KAGNFYVPAEPK RQMYRTEIRMARMARKAGNFYVPAEPKLAF MARKAGNFYVPAEPKLAFVIRIRGINGVSP R K A P K L 2 0 1 0 0 0 1 1 0 0 0 2 0 1 2 0 0 0 1 1 0 0 12 1 1319.6874 P18124;A8MUD9;C9JIJ5;C9JZ88 P18124 77 88 RPL7 60S ribosomal protein L7 yes no 2;3 4.6169E-08 99.174 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1.3073 1.2195 55.191 8 Median 0.9728 0.93815 11.341 2 1 Median 1.286 1.1575 33.122 2 1 Median 2.135 2.2324 NaN 1 1 Median 3.1409 2.758 NaN 1 1 Median 3.1264 3.318 NaN 1 1 Median 1.0413 0.8838 NaN 1 0 Median 265280000 106920000 158360000 146250000 72930000 73316000 45899000 17223000 28676000 7640600 2390500 5250100 34744000 5362800 29381000 25089000 6588500 18501000 5663000 2429600 3233400 16959 2056 17687 88195;88196;88197;88198;88199;88200;88201;88202;88203;88204;88205 89691;89692;89693;89694;89695;89696;89697;89698;89699;89700;89701;89702 89700 12 KAGTQIENIDEDFRDGLK QQRKTFTAWCNSHLRKAGTQIENIDEDFRD TQIENIDEDFRDGLKLMLLLEVISGERLPK R K A L K L 1 1 1 3 0 1 2 2 0 2 1 2 0 1 0 0 1 0 0 0 0 0 18 2 2048.0174 O43707;F5GXS2;K7EP19 O43707 66 83 ACTN4 Alpha-actinin-4 yes no 3 2.3858E-18 119.23 By MS/MS 1 0.54872 0.62371 NaN 1 Median 0.54872 0.62371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27345000 14872000 12473000 27345000 14872000 12473000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16960 1585 17688 88206 89703 89703 1 KAHGLLAEENR RAEKASYAEQLSMLKKAHGLLAEENRGLGE SMLKKAHGLLAEENRGLGERANLGRQFLEV K K A N R G 2 1 1 0 0 0 2 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1236.6575 A0A087WY61;K4DIE0;Q14980 Q14980 1442 1452 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.0013258 45.879 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.86694 0.97752 6.9186 5 Median NaN NaN NaN 0 0 Median 1.0264 0.98677 NaN 1 0 Median 0.86694 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82349 0.92597 7.6614 2 0 Median 1.0078 0.8952 NaN 1 0 Median 7988300 4236100 3752200 0 0 0 903720 458350 445370 2524900 1352900 1172000 0 0 0 3375100 1854200 1521000 1184600 570760 613810 16961 2905;77 17689 88207;88208;88209;88210;88211 89704;89705;89706;89707;89708;89709;89710 89707 7 KAHLMEIQVNGGTVAEK VIAHTQMRLLPLRQKKAHLMEIQVNGGTVA HLMEIQVNGGTVAEKLDWARERLEQQVPVN K K A E K L 2 0 1 0 0 1 2 2 1 1 1 2 1 0 0 0 1 0 0 2 0 0 17 1 1823.9564 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2 P39023 177 193 RPL3 60S ribosomal protein L3 yes no 2;3;4 2.2687E-32 153.09 By MS/MS By MS/MS By MS/MS By MS/MS 7 2 2 1 0.9912 0.98076 19.163 11 Median 0.9795 0.99504 7.6623 6 1 Median 0.89855 0.85969 14.121 2 0 Median 1.3625 1.4576 10.053 2 1 Median 1.0326 0.98076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146010000 68413000 77596000 71227000 33517000 37710000 58846000 27732000 31114000 6822800 3261100 3561700 9112300 3902700 5209600 0 0 0 0 0 0 16962 2281 17690 88212;88213;88214;88215;88216;88217;88218;88219;88220;88221;88222;88223 89711;89712;89713;89714;89715;89716;89717;89718;89719;89720;89721;89722;89723 89715 13 KAHLTNQYMQR SKPLYVALAQRKEERKAHLTNQYMQRVAGM KEERKAHLTNQYMQRVAGMRALPANAILNQ R K A Q R V 1 1 1 0 0 2 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 11 1 1388.6983 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 375 385 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2;3 3.7047E-05 82.417 By MS/MS By MS/MS By MS/MS By MS/MS 1 5 2 1 1.1167 1.0253 19.078 9 Median 1.2174 1.2474 NaN 1 0 Median 0.98508 0.89828 15.385 5 0 Median NaN NaN NaN 0 0 Median 1.1837 1.1109 15.475 2 0 Median 1.288 1.4305 NaN 1 0 Median NaN NaN NaN 0 0 Median 26096000 13493000 12603000 2771800 1339800 1432000 21317000 11232000 10085000 0 0 0 753070 345040 408030 1254700 576880 677850 0 0 0 16963 576;1151 17691 88224;88225;88226;88227;88228;88229;88230;88231;88232 89724;89725;89726;89727;89728;89729;89730;89731;89732;89733;89734;89735 89731 12 KAHQDIHTQLQDVK KETVYNLREENRQLRKAHQDIHTQLQDVKQ RKAHQDIHTQLQDVKQQHKNLLSEHEQLVV R K A V K Q 1 0 0 2 0 3 0 0 2 1 1 2 0 0 0 0 1 0 0 1 0 0 14 1 1659.8693 O00461;F8W785 O00461 187 200 GOLIM4 Golgi integral membrane protein 4 yes no 3;4 0.012966 23.881 By matching By MS/MS 1 2 1.6512 1.5402 23.31 3 Plateau 0.99031 1.0235 NaN 1 0 Median 1.6134 1.5111 8.6376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3969200 1521100 2448100 689340 242370 446970 3279900 1278800 2001200 0 0 0 0 0 0 0 0 0 0 0 0 16964 1466 17692 88233;88234;88235 89736;89737;89738;89739 89738 4 KAHQLWLSVEALK EQAVQSHAVAEEEARKAHQLWLSVEALKYS ARKAHQLWLSVEALKYSMKTSSAETPTIPL R K A L K Y 2 0 0 0 0 1 1 0 1 0 3 2 0 0 0 1 0 1 0 1 0 0 13 1 1521.8667 Q16891;B9A067;C9J406;H7C463 Q16891 565 577 IMMT MICOS complex subunit MIC60 yes no 2;3 0.00032108 55.314 By MS/MS By MS/MS By matching 2 1 4 1.2657 1.1895 31.651 7 Median 1.2091 1.2436 6.2848 2 0 Median 1.4289 1.3827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2568 1.1141 44.202 4 0 Median 25835000 10921000 14913000 19169000 8261100 10908000 3854300 1536100 2318300 0 0 0 0 0 0 0 0 0 2811200 1124000 1687200 16965 3001 17693 88236;88237;88238;88239;88240;88241;88242 89740;89741;89742;89743 89740 4 KAHSVYNFEKPVVMK NFQMVYNEFQKFVQRKAHSVYNFEKPVVMK KAHSVYNFEKPVVMKAFEHLQQLELIKPME R K A M K A 1 0 1 0 0 0 1 0 1 0 0 3 1 1 1 1 0 0 1 3 0 0 15 2 1775.9393 O43929 O43929 360 374 ORC4 Origin recognition complex subunit 4 no no 4 0.004008 27.458 By MS/MS By matching 2 1 1.1063 1.2976 25.272 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97578 1.1106 22.008 2 0 Median 1.6313 1.568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17964000 8250100 9714300 0 0 0 0 0 0 12137000 6054100 6083100 5827200 2196000 3631300 0 0 0 0 0 0 + 16966 1602 17694 88243;88244;88245 89744;89745 89744 2 KAIIIFVPVPQLK LNITAAKEIEVGGGRKAIIIFVPVPQLKSF GRKAIIIFVPVPQLKSFQKIQVRLVRELEK R K A L K S 1 0 0 0 0 1 0 0 0 3 1 2 0 1 2 0 0 0 0 2 0 0 13 1 1464.9432 P62081;B5MCP9 P62081 58 70 RPS7 40S ribosomal protein S7 yes no 2 0.061974 35.944 By MS/MS 1 0.84785 0.77494 NaN 1 Median NaN NaN NaN 0 0 Median 0.84785 0.77494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4989200 2698000 2291100 0 0 0 4989200 2698000 2291100 0 0 0 0 0 0 0 0 0 0 0 0 16967 2568 17695 88246 89746 89746 1 KAISSTEAVLNNR PEGALIQFATYEEAKKAISSTEAVLNNRFI AKKAISSTEAVLNNRFIKVYWHREGSTQQL K K A N R F 2 1 2 0 0 0 1 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 13 1 1401.7576 Q5T8P6;Q9P2N5;U3KPZ7 Q5T8P6 585 597 RBM26;RBM27 RNA-binding protein 26;RNA-binding protein 27 no no 3 0.00020333 63.727 By MS/MS By matching 1 1 0.91525 0.88014 14.118 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70046 0.79652 NaN 1 0 Median 1.1959 0.97253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2811100 1584900 1226200 0 0 0 0 0 0 2557200 1474100 1083100 253880 110810 143070 0 0 0 0 0 0 16968 3097;4227 17696 88247;88248 89747;89748 89748 2 KAITFLQSATR EGIAYLVKVSEGDLRKAITFLQSATRLTGG GDLRKAITFLQSATRLTGGKEITEKVITDI R K A T R L 2 1 0 0 0 1 0 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 11 1 1234.7034 P35249;C9JZI1;H7C1P0 P35249 240 250 RFC4 Replication factor C subunit 4 yes no 2;3 0.00011802 68.536 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.2625 1.2944 19.111 6 Median 0.78258 0.83841 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2625 1.3777 5.7098 2 0 Median 1.4743 1.2944 2.5083 2 0 Median 1.1831 1.2693 NaN 1 0 Median NaN NaN NaN 0 0 Median 14292000 6528600 7763500 5543800 2962300 2581500 0 0 0 5662900 2347000 3315800 2294000 878010 1416000 791360 341200 450150 0 0 0 16969 2237 17697 88249;88250;88251;88252;88253;88254 89749;89750;89751;89752;89753;89754 89750 6 KALAAAGYDVEK AASKERSGVSLAALKKALAAAGYDVEKNNS ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K K A E K N 4 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1234.6558 P10412;Q02539;P16402;P16403 P16402 65 76 HIST1H1E;HIST1H1A;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.3;Histone H1.2 no no 2;3 4.6441E-06 133.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 11 13 1.1804 1.0576 25.696 36 Median 1.1139 1.0819 3.2297 2 0 Median 1.245 1.1214 1.5257 2 0 Median 0.83979 0.8758 12.175 3 0 Median 2.02 1.8194 34.023 5 0 Median 0.87238 0.93282 13.128 11 0 Median 1.3118 1.1706 22.343 13 0 Median 635450000 311280000 324170000 4504400 2227000 2277500 10289000 4375700 5913800 42680000 23107000 19573000 27126000 10402000 16725000 346000000 182710000 163280000 204850000 88454000 116400000 16970 2028;1937;2029 17698 88255;88256;88257;88258;88259;88260;88261;88262;88263;88264;88265;88266;88267;88268;88269;88270;88271;88272;88273;88274;88275;88276;88277;88278;88279;88280;88281;88282;88283;88284;88285;88286;88287;88288;88289;88290 89755;89756;89757;89758;89759;89760;89761;89762;89763;89764;89765;89766;89767;89768;89769;89770;89771;89772;89773;89774;89775;89776;89777;89778;89779;89780;89781;89782;89783;89784;89785;89786;89787;89788;89789;89790;89791;89792;89793;89794;89795;89796;89797;89798;89799;89800;89801;89802;89803;89804;89805;89806;89807;89808 89762 54 KALAAAGYDVEKNNSR AASKERSGVSLAALKKALAAAGYDVEKNNS ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV K K A S R I 4 1 2 1 0 0 1 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 16 2 1705.8747 P10412;Q02539;P16402;P16403 P16402 65 80 HIST1H1E;HIST1H1A;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.3;Histone H1.2 no no 2;3;4 8.0144E-11 128.74 By MS/MS By MS/MS By MS/MS 3 13 4 0.85462 0.93042 23.786 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0807 1.0493 28.608 3 0 Median 0.76729 0.88757 20.431 13 1 Median 1.1372 1.0601 25.627 4 0 Median 244060000 126240000 117810000 0 0 0 0 0 0 0 0 0 7601000 3199600 4401400 222880000 117000000 105880000 13579000 6048000 7530800 16971 2028;1937;2029 17699 88291;88292;88293;88294;88295;88296;88297;88298;88299;88300;88301;88302;88303;88304;88305;88306;88307;88308;88309;88310 89809;89810;89811;89812;89813;89814;89815;89816;89817;89818;89819;89820;89821;89822;89823;89824;89825;89826;89827;89828;89829;89830;89831;89832;89833;89834;89835;89836;89837;89838;89839;89840 89836 32 KALDDMISTLKK LEQQMHPTVVISAYRKALDDMISTLKKISI AYRKALDDMISTLKKISIPVDISDSDMMLN R K A K K I 1 0 0 2 0 0 0 0 0 1 2 3 1 0 0 1 1 0 0 0 0 0 12 2 1361.7588 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;E9PQ35 P49368 128 139 CCT3 T-complex protein 1 subunit gamma yes no 3 0.00018916 74.698 By MS/MS By matching By matching 1 1 1 1.244 1.1218 29.044 3 Median 1.0993 1.1218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5479 1.8291 NaN 1 0 Median 1.244 1.0916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26260000 11393000 14867000 23146000 10208000 12938000 0 0 0 2808500 1067000 1741400 306100 118580 187530 0 0 0 0 0 0 16972 2379 17700 88311;88312;88313 89841;89842 89842 2 KALDIAENEMPGLMR LPYKVADIGLAAWGRKALDIAENEMPGLMR KALDIAENEMPGLMRMRERYSASKPLKGAR R K A M R M 2 1 1 1 0 0 2 1 0 1 2 1 2 0 1 0 0 0 0 0 0 0 15 1 1686.8433 P23526 P23526 20 34 AHCY Adenosylhomocysteinase yes yes 2;3 9.5207E-10 107.85 By MS/MS By matching By MS/MS 2 1 1 1.1763 1.2298 22.08 3 Plateau 1.1763 1.1724 19.351 2 0 Median 0.95108 0.86844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25601000 11158000 14443000 24705000 10750000 13955000 896130 408030 488100 0 0 0 0 0 0 0 0 0 0 0 0 16973 2116 17701;17702 88314;88315;88316;88317 89843;89844;89845;89846 89845 884;885 4 KALEEETKNHEAQIQDMR QELRTKREQEVAELKKALEEETKNHEAQIQ EEETKNHEAQIQDMRQRHATALEELSEQLE K K A M R Q 2 1 1 1 0 2 4 0 1 1 1 2 1 0 0 0 1 0 0 0 0 0 18 2 2169.0484 P35580 P35580 1181 1198 MYH10 Myosin-10 yes yes 4 0.025649 15.422 By MS/MS 1 0.89795 0.9492 NaN 1 Median 0.89795 0.9492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3152500 1661800 1490700 3152500 1661800 1490700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16974 2245 17703 88318 89847;89848 89847 2 KALEESESSQLISPPLAQAIR ERSHISDQSPLSSKRKALEESESSQLISPP ESSQLISPPLAQAIRDYVNSLLVQGGVGSL R K A I R D 3 1 0 0 0 2 3 0 0 2 3 1 0 0 2 4 0 0 0 0 0 0 21 1 2266.2169 P42166 P42166 358 378 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 2.2031E-26 145.88 By MS/MS By MS/MS By matching 2 4 1 0.82975 0.77637 9.6463 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59991 0.65908 0.46504 2 0 Median 0.85605 0.79465 5.9226 4 0 Median NaN NaN NaN 0 0 Median 0.87695 0.77637 NaN 1 0 Median 31730000 18157000 13573000 0 0 0 0 0 0 29650000 17088000 12562000 1847400 954960 892450 0 0 0 232740 113740 118990 16975 2306 17704 88319;88320;88321;88322;88323;88324;88325 89849;89850;89851;89852 89851 4 KALEHVPNSVR AELETDIRAKKRVLRKALEHVPNSVRLWKA RVLRKALEHVPNSVRLWKAAVELEEPEDAR R K A V R L 1 1 1 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 0 0 11 1 1248.6939 O94906 O94906 395 405 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.0076764 30.729 By MS/MS By matching By MS/MS 1 1 1 0.87614 0.83501 7.4032 3 Plateau NaN NaN NaN 0 0 Median 0.87614 0.83501 NaN 1 0 Median 0.76106 0.86906 NaN 1 0 Median 0.78347 0.75292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3008000 1471900 1536100 0 0 0 1303500 576610 726840 852110 458690 393420 852430 436550 415880 0 0 0 0 0 0 16976 1735 17705 88326;88327;88328 89853;89854;89855 89855 3 KALELDQER EQTIKAQKELEEQTRKALELDQERKRAKEE LEEQTRKALELDQERKRAKEEAERLEKERR R K A E R K 1 1 0 1 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1100.5826 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 371 379 RDX Radixin yes no 2 0.032339 38.303 By matching By MS/MS By MS/MS 1 1 1 0.76061 0.80705 34.987 3 Median 0.56787 0.58201 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76061 0.80705 NaN 1 0 Median 1.2247 1.1711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8611000 4837900 3773100 3283400 1989500 1293900 0 0 0 4410100 2460900 1949200 917490 387410 530080 0 0 0 0 0 0 16977 2235 17706 88329;88330;88331 89856;89857;89858 89856 3 KALFAVGVGR LQEAFFGKELLDLSRKALFAVGVGRPSFGL LDLSRKALFAVGVGRPSFGLGTPKAKGDGG R K A G R P 2 1 0 0 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 2 0 0 10 1 1016.6131 O14686;A0A3B3ISC8 O14686 1787 1796 KMT2D Histone-lysine N-methyltransferase 2D yes no 2 0.0022191 64.42 By MS/MS By matching 1 1 0.88176 0.91602 12.848 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8658 1.0031 NaN 1 0 Median 0.89801 0.83646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7984800 4415700 3569100 0 0 0 0 0 0 7658000 4236800 3421200 326840 178880 147960 0 0 0 0 0 0 16978 1490 17707 88332;88333 89859 89859 1 KALKEFEQLR KSKKYHKVVKKGKAKKALKEFEQLRKVNPA KGKAKKALKEFEQLRKVNPAAALEELEKIE K K A L R K 1 1 0 0 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 2 1260.719 Q9BVJ6;X6RJY0 Q9BVJ6 263 272 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 0.0001313 77.662 By MS/MS 1 1.2322 1.4521 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2322 1.4521 NaN 1 0 Median NaN NaN NaN 0 0 Median 5957500 2659800 3297700 0 0 0 0 0 0 0 0 0 0 0 0 5957500 2659800 3297700 0 0 0 16979 3855 17708 88334 89860 89860 1 KALPASETPK PAKSPNPSTPRGKKRKALPASETPKAAESE RGKKRKALPASETPKAAESETPGKSPEKKP R K A P K A 2 0 0 0 0 0 1 0 0 0 1 2 0 0 2 1 1 0 0 0 0 0 10 1 1040.5866 O76021;J3QSV6 O76021 408 417 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.024226 38.086 By matching By MS/MS By matching 1 4 1 0.74332 0.75016 6.3251 6 Median NaN NaN NaN 0 0 Median 0.81216 0.76547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70184 0.75658 7.9535 4 0 Median 0.80051 0.73515 NaN 1 0 Median 3490100 1891200 1599000 0 0 0 854300 435150 419160 0 0 0 0 0 0 2566100 1418900 1147200 69734 37148 32587 16980 1716 17709 88335;88336;88337;88338;88339;88340 89861 89861 1 KALTSFER GQQQVFKGLNDKVKKKALTSFERDSIFSNL LNDKVKKKALTSFERDSIFSNLTGQLDYQG K K A E R D 1 1 0 0 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 8 1 950.51853 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21 H0YFD6 415 422 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.037194 42.109 By matching By MS/MS 1 1 1.2138 1.2241 12.722 2 Median 1.1007 1.1188 NaN 1 0 Median 1.3384 1.3393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2815000 1265600 1549400 971600 461620 509980 1843400 804020 1039400 0 0 0 0 0 0 0 0 0 0 0 0 16981 1180 17710 88341;88342 89862 89862 1 KALVDILSEVSK QALAQYQNHLQEQPRKALVDILSEVSKATL QPRKALVDILSEVSKATLQEILPEVLKADL R K A S K A 1 0 0 1 0 0 1 0 0 1 2 2 0 0 0 2 0 0 0 2 0 0 12 1 1300.7602 Q9BQG0;I3L1L3 Q9BQG0 179 190 MYBBP1A Myb-binding protein 1A yes no 2;3 0.00041009 83.045 By matching By MS/MS By matching By MS/MS By matching 1 2 1 5 3 1.0676 1.1095 18.414 12 Median NaN NaN NaN 0 0 Median 1.182 1.1211 NaN 1 0 Median 1.1916 1.3724 21.833 2 0 Median 1.1468 1.0925 NaN 1 0 Median 1.0177 1.1253 12.848 5 0 Median 0.94826 0.86371 10.627 3 0 Median 31445000 14797000 16647000 0 0 0 411390 141990 269400 16182000 7439400 8742400 441900 209610 232280 13909000 6762700 7146700 500380 243730 256650 16982 3789 17711 88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353;88354 89863;89864;89865;89866;89867;89868 89867 6 KALWFQGR ETREDAMAMVDHCLKKALWFQGRCVKVDLS MVDHCLKKALWFQGRCVKVDLSEKYKKLVL K K A G R C 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 8 1 1004.5556 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 555 562 MATR3 Matrin-3 yes no 2 0.0062918 81.635 By matching By MS/MS 1 1 0.93425 1.0442 15.005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82677 0.9391 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0557 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median 12433000 6516900 5916500 0 0 0 0 0 0 3710100 2426800 1283300 0 0 0 8723200 4090000 4633200 0 0 0 16983 297 17712 88355;88356 89869 89869 1 KAMEAVAAQGK PIKPMQFLGDEETVRKAMEAVAAQGKAKK_ ETVRKAMEAVAAQGKAKK____________ R K A G K A 4 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 11 1 1102.5805 P18669;P15259 P18669 241 251 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 2 0.020067 37.191 By matching By MS/MS By matching 2 1 1 1.1279 1.1061 5.7827 4 Median 1.169 1.1626 7.6086 2 0 Median 1.1736 1.0766 NaN 1 0 Median 1.084 1.1105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4387600 2033800 2353800 3028600 1399100 1629400 879350 393330 486020 479690 241310 238380 0 0 0 0 0 0 0 0 0 16984 2060 17713 88357;88358;88359;88360 89870 89870 1 KAMVEYEIDLQK VQDLIKMIFDVESMKKAMVEYEIDLQKMPL SMKKAMVEYEIDLQKMPLGKLSKRQIQAAY K K A Q K M 1 0 0 1 0 1 2 0 0 1 1 2 1 0 0 0 0 0 1 1 0 0 12 1 1465.7487 P09874 P09874 684 695 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 7.4644E-06 112.13 By matching By MS/MS 3 4 1.0921 1.0942 9.8867 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9348 1.0723 11.82 3 0 Median 1.1751 1.1194 7.5526 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32405000 16445000 15960000 0 0 0 0 0 0 13363000 7598200 5764500 19042000 8846800 10196000 0 0 0 0 0 0 16985 1922 17714;17715 88361;88362;88363;88364;88365;88366;88367 89871;89872;89873;89874;89875;89876 89873 697 6 KANAEELANNLK VEFTSSGSVLLFVTKKANAEELANNLKQEG VTKKANAEELANNLKQEGHNLGLLHGDMDQ K K A L K Q 3 0 3 0 0 0 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1313.6939 Q86XP3;A0A0A0MSJ0 Q86XP3 508 519 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 0.049123 13.745 By MS/MS By matching 2 1 0.59326 0.67901 37.569 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58813 0.67265 1.3295 2 0 Median 1.3533 1.2892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4903500 2365500 2538000 0 0 0 0 0 0 3304500 1631900 1672600 1599000 733640 865350 0 0 0 0 0 0 16986 3302 17716 88368;88369;88370 89877 89877 1 KANLQIDQINTDLNLER EEEQGNTELINDRLKKANLQIDQINTDLNL NLQIDQINTDLNLERSHAQKNENARQQLER K K A E R S 1 1 3 2 0 2 1 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 17 1 1997.0542 P35579 P35579 1754 1770 MYH9 Myosin-9 yes yes 2;3 1.8622E-31 200.21 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1 0.95326 0.97714 14.042 9 Median 1.1419 1.1288 8.6188 3 0 Plateau 0.95111 0.89382 9.8953 2 1 Median 0.80498 0.96145 12.423 2 0 Median 0.95326 0.92027 NaN 1 0 Median 1.1611 1.3139 NaN 1 0 Median NaN NaN NaN 0 0 Median 221720000 98833000 122890000 154030000 66242000 87792000 42885000 19445000 23440000 19080000 10615000 8465800 456000 206730 249270 5265100 2325100 2940000 0 0 0 16987 2244 17717 88371;88372;88373;88374;88375;88376;88377;88378;88379 89878;89879;89880;89881;89882;89883;89884;89885;89886;89887;89888 89881 11 KANPDLPILIR QGVRDFIEKRYVELKKANPDLPILIRECSD VELKKANPDLPILIRECSDVQPKLWARYAF K K A I R E 1 1 1 1 0 0 0 0 0 2 2 1 0 0 2 0 0 0 0 0 0 0 11 1 1248.7554 O43678 O43678 46 56 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 3 0.0068461 47.559 By MS/MS 1 0.71153 0.69772 NaN 1 Median 0.71153 0.69772 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1010200 683180 326990 1010200 683180 326990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16988 1584 17718 88380 89889 89889 1 KANYAVDAYFR KIAFTEWIEPPKRERKANYAVDAYFREALR KRERKANYAVDAYFREALRVSEPKAPKAPR R K A F R E 3 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 1 0 0 11 1 1316.6513 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 739 749 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2;3 3.2147E-05 105.98 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 4 3 1.2601 1.2292 19.605 12 Median NaN NaN NaN 0 0 Median 1.2069 1.0854 NaN 1 0 Median 1.0827 1.2284 11.97 3 0 Median 2.0782 1.9972 NaN 1 0 Median 1.0796 1.206 21.594 4 2 Median 1.4228 1.2301 8.567 3 0 Median 99263000 45602000 53662000 0 0 0 925220 414610 510600 47228000 22765000 24464000 1766100 513450 1252600 43116000 19420000 23696000 6227600 2488600 3739100 16989 1608;643;167 17719 88381;88382;88383;88384;88385;88386;88387;88388;88389;88390;88391;88392 89890;89891;89892;89893;89894;89895;89896;89897;89898;89899;89900;89901;89902 89893 13 KAPAGQEEPGTPPSSPLSAEQLDR GVPEESGDAAAIPAKKAPAGQEEPGTPPSS GTPPSSPLSAEQLDRIQRNKAAALLRLAAR K K A D R I 3 1 0 1 0 2 3 2 0 0 2 1 0 0 5 3 1 0 0 0 0 0 24 1 2461.2085 P13051;Q68DM5;F5GYA2 P13051 50 73 UNG;DKFZp781L1143 Uracil-DNA glycosylase yes no 3 0.0020523 25.15 By matching By MS/MS 1 2 0.41437 0.37918 29.745 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36328 0.37918 NaN 1 0 Median 0.52254 0.47627 37.723 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21691000 14866000 6825100 0 0 0 0 0 0 14570000 10192000 4378100 7121100 4674100 2447000 0 0 0 0 0 0 16990 1987 17720 88393;88394;88395 89903;89904;89905 89903 3 KAPAPFRPASER PLTPPARCAAPGGVRKAPAPFRPASERFAA GVRKAPAPFRPASERFAATTVEEILAKMEQ R K A E R F 3 2 0 0 0 0 1 0 0 0 0 1 0 1 3 1 0 0 0 0 0 0 12 2 1325.7204 Q9C0C2;E9PKK0 Q9C0C2 144 155 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 3 0.026375 23.226 By matching By MS/MS 1 1 0.56525 0.62589 12.726 2 Median 0.56065 0.57203 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56989 0.68483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1135100 688510 446630 569780 338510 231270 0 0 0 565360 349990 215370 0 0 0 0 0 0 0 0 0 16991 3903 17721 88396;88397 89906;89907 89906 2 KAPDFVFYAPR ISFNDKKFVIKPIDKKAPDFVFYAPRLRIN PIDKKAPDFVFYAPRLRINKRILALCMGNH K K A P R L 2 1 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 0 1 1 0 0 11 1 1309.6819 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 263 273 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2;3 0.00016588 85.731 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 3 5 1 0.90113 0.90641 13.874 14 Median 0.77875 0.79466 11.46 4 1 Median 0.98116 0.90178 NaN 1 0 Median 0.90798 0.97649 5.1066 3 0 Median 0.92034 0.87179 13.022 5 0 Median 1.0381 1.1541 NaN 1 0 Median NaN NaN NaN 0 0 Median 83537000 44357000 39180000 39830000 21850000 17980000 1709400 879410 829970 36264000 18509000 17755000 4838900 2688500 2150500 894210 430310 463900 0 0 0 16992 2139;879;2235 17722 88398;88399;88400;88401;88402;88403;88404;88405;88406;88407;88408;88409;88410;88411 89908;89909;89910;89911;89912;89913;89914;89915;89916;89917;89918;89919;89920;89921;89922;89923 89908 16 KAPGSDPFMSSGQGPNGGMGDPYSR RMSYEPNKDPYGSMRKAPGSDPFMSSGQGP SGQGPNGGMGDPYSRAAGPGLGNVAMGPRQ R K A S R A 1 1 1 2 0 1 0 6 0 0 0 1 2 1 4 4 0 0 1 0 0 0 25 1 2496.0798 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;H0YCU6 O14497 1238 1262 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 1.0322E-13 61.801 By MS/MS By MS/MS 1 1 0.61141 0.65776 24.21 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46233 0.55427 NaN 1 0 Median 0.80857 0.78058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10415000 6678100 3736500 0 0 0 0 0 0 9056600 6060700 2995900 1358100 617400 740650 0 0 0 0 0 0 16993 1480 17723 88412;88413 89924;89925 89924 2 KAPIQTYVLGANNQETVK STQDAEWEEYKTGIKKAPIQTYVLGANNQE IQTYVLGANNQETVKYFQDADGCELAENIT K K A V K Y 2 0 2 0 0 2 1 1 0 1 1 2 0 0 1 0 2 0 1 2 0 0 18 1 1973.0582 Q69YN2 Q69YN2 62 79 CWF19L1 CWF19-like protein 1 yes yes 3 1.0248E-06 77.505 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0101 0.96821 8.8592 4 Median 1.0711 1.0053 NaN 1 0 Median 0.95259 0.89398 NaN 1 0 Median 0.89156 0.93246 NaN 1 0 Median 1.1842 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22533000 11307000 11226000 11398000 5820400 5577700 1746500 899790 846700 7054500 3436100 3618300 2333900 1150700 1183200 0 0 0 0 0 0 16994 3129 17724 88414;88415;88416;88417 89926;89927;89928 89926 3 KAPPDGWELIEPTLDELDQK ______________________________ GWELIEPTLDELDQKMREAETEPHEGKRKV R K A Q K M 1 0 0 3 0 1 3 1 0 1 3 2 0 0 3 0 1 1 0 0 0 0 20 1 2293.1478 P41223;F8WCN7;C9JCD9 P41223 9 28 BUD31 Protein BUD31 homolog yes no 3 0.0080321 21.599 By MS/MS By matching 1 1 1.0514 1.0354 24.863 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0737 1.2344 NaN 1 0 Median 1.0296 0.86849 NaN 1 0 Median 5165800 2452300 2713500 0 0 0 0 0 0 0 0 0 0 0 0 4706400 2278100 2428300 459400 174250 285150 16995 2297 17725 88418;88419 89929;89930 89930 2 KAPPLVENEEAEPGR ______________________________ KAPPLVENEEAEPGRGGLGVGEPGPLGGGG K K A G R G 2 1 1 0 0 0 4 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 15 1 1634.8264 O14908;K7ELJ2 O14908 10 24 GIPC1 PDZ domain-containing protein GIPC1 yes no 3 0.026121 29.733 By MS/MS By MS/MS 1 1 1.2748 1.116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2748 1.116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1850200 973820 876410 0 0 0 0 0 0 0 0 0 1850200 973820 876410 0 0 0 0 0 0 16996 1502 17726 88420;88421 89931;89932 89931 2 KAPPPPISPTQLSDVSSPR VSKISSERSGTPKKRKAPPPPISPTQLSDV PPISPTQLSDVSSPRSITSTPLSGKESVFF R K A P R S 1 1 0 1 0 1 0 0 0 1 1 1 0 0 6 4 1 0 0 1 0 0 19 1 1973.0582 Q9P0K7 Q9P0K7 274 292 RAI14 Ankycorbin yes yes 3 0.00066613 28.65 By MS/MS 1 0.41127 0.39524 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41127 0.39524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554000 994770 559190 0 0 0 0 0 0 0 0 0 1554000 994770 559190 0 0 0 0 0 0 16997 4204 17727 88422 89933 89933 1 KAPQHTAVGFK LEYSEARRTMTNALRKAPQHTAVGFKQTVH NALRKAPQHTAVGFKQTVHKLLIVVELLLG R K A F K Q 2 0 0 0 0 1 0 1 1 0 0 2 0 1 1 0 1 0 0 1 0 0 11 1 1182.6509 O43242 O43242 315 325 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 3 0.00018027 86.014 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1852500 0 1852500 0 0 0 1852500 0 1852500 0 0 0 0 0 0 0 0 0 0 0 0 16998 1560 17728 88423 89934 89934 1 KAPQLTSPELMALTR GEYYLQNAFLVAYTKKAPQLTSPELMALTR KAPQLTSPELMALTRKMANAGAICCHLSED K K A T R K 2 1 0 0 0 1 1 0 0 0 3 1 1 0 2 1 2 0 0 0 0 0 15 1 1654.9076 CON__Q3SZ57 CON__Q3SZ57 439 453 yes yes 3 2.4593E-05 68.944 By MS/MS 2 0.032386 0.032848 65.508 2 Median 0.032386 0.032848 65.508 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16428000 15683000 744900 16428000 15683000 744900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 16999 778 17729 88424;88425 89935;89936 89936 2 KAPSDLYQIILK FEDFTGGVTEWYELRKAPSDLYQIILKALE ELRKAPSDLYQIILKALERGSLLGCSIDIS R K A L K A 1 0 0 1 0 1 0 0 0 2 2 2 0 0 1 1 0 0 1 0 0 0 12 1 1387.8075 P07384;E9PL37 P07384 229 240 CAPN1 Calpain-1 catalytic subunit yes no 2 0.00083197 73.951 By MS/MS By matching By matching 1 1 1 1.2696 1.2403 14.526 3 Median 0.95828 0.98586 NaN 1 0 Median 1.337 1.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2696 1.2403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9304100 4824500 4479600 8419800 4449200 3970500 623070 259940 363130 0 0 0 261260 115330 145930 0 0 0 0 0 0 17000 1886 17730 88426;88427;88428 89937;89938 89938 2 KAPVLFNK KEVDILISTALIPGKKAPVLFNKEMIESMK TALIPGKKAPVLFNKEMIESMKEGSVVVDL K K A N K E 1 0 1 0 0 0 0 0 0 0 1 2 0 1 1 0 0 0 0 1 0 0 8 1 915.55419 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 324 331 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.015331 58.194 By MS/MS 2 1.2253 1.184 2.0209 2 Median NaN NaN NaN 0 0 Median 1.2253 1.184 2.0209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7471300 3410000 4061300 0 0 0 7471300 3410000 4061300 0 0 0 0 0 0 0 0 0 0 0 0 17001 2814 17731 88429;88430 89939 89939 1 KAQASLNAGLDLR KRKFEPGTQRFELHKKAQASLNAGLDLRLA HKKAQASLNAGLDLRLAVQLPPG_______ K K A L R L 3 1 1 1 0 1 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 13 1 1355.7521 K7EPX7;K7EKK6;K7ELS3;K7ESA9;Q96BX8 K7EPX7 34 46 MOB3A MOB kinase activator 3A yes no 3 0.00072701 45.654 By MS/MS By matching 1 1 0.77484 0.77272 28.419 2 Median 0.60089 0.63204 NaN 1 0 Median 0.99914 0.9447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635200 2343700 1291500 3184700 2161500 1023200 450510 182220 268290 0 0 0 0 0 0 0 0 0 0 0 0 17002 1372 17732 88431;88432 89940 89940 1 KAQDALPFFMMHLGYEK HLYSCLEDRNGDVRKKAQDALPFFMMHLGY QDALPFFMMHLGYEKMAKATGKLKPTSKDQ K K A E K M 2 0 0 1 0 1 1 1 1 0 2 2 2 2 1 0 0 0 1 0 0 0 17 1 2024.9852 Q14008 Q14008 1037 1053 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.013378 20.368 By MS/MS 2 0.9701 1.1117 15.128 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9701 1.1117 15.128 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3840400 1890000 1950400 0 0 0 0 0 0 3840400 1890000 1950400 0 0 0 0 0 0 0 0 0 17003 2850 17733 88433;88434 89941;89942;89943 89941 3 KAQDEGLLSDVVPFK LEQDEYALRSHSLAKKAQDEGLLSDVVPFK KAQDEGLLSDVVPFKVPGKDTVTKDNGIRP K K A F K V 1 0 0 2 0 1 1 1 0 0 2 2 0 1 1 1 0 0 0 2 0 0 15 1 1644.8723 P55084;F5GZQ3 P55084 254 268 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 0.0066992 36.638 By MS/MS 1 0.92892 0.96858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92892 0.96858 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16538000 8115500 8422200 0 0 0 0 0 0 16538000 8115500 8422200 0 0 0 0 0 0 0 0 0 17004 2496 17734 88435 89944 89944 1 KAQIAIDIK HNDPNLETVYTLCEKKAQIAIDIKSAKREL YTLCEKKAQIAIDIKSAKRELKKARTVLQM K K A I K S 2 0 0 1 0 1 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 9 1 998.61243 P42285 P42285 825 833 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0019862 81.972 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 2 1.1829 1.1077 17.15 7 Median 1.2574 1.3312 NaN 1 0 Median 1.1829 1.0987 NaN 1 0 Median 1.0081 1.1556 NaN 1 0 Median 1.1149 1.062 NaN 1 0 Median 1.3833 1.5472 NaN 1 0 Median 1.1301 1.0011 14.307 2 0 Median 23012000 10028000 12984000 1584900 570440 1014500 7491800 3300200 4191700 4425500 1976000 2449500 5293800 2384300 2909400 1783200 734670 1048600 2433300 1062400 1370900 17005 2309 17735 88436;88437;88438;88439;88440;88441;88442 89945;89946;89947;89948;89949;89950;89951;89952 89946 8 KAQNIMESFENPFR SAEDSKKGPLTVAQKKAQNIMESFENPFRM KKAQNIMESFENPFRMFLPSLGHRAPVSQA K K A F R M 1 1 2 0 0 1 2 0 0 1 0 1 1 2 1 1 0 0 0 0 0 0 14 1 1709.8195 Q01780 Q01780 680 693 EXOSC10 Exosome component 10 yes yes 3 0.053117 11.27 By MS/MS 1 0.9593 1.0906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9593 1.0906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2311800 1148800 1163000 0 0 0 0 0 0 2311800 1148800 1163000 0 0 0 0 0 0 0 0 0 17006 2691 17736 88443 89953 89953 1 KAQPAQPADEPAEKADEPMEH DVSPFLEGLEERPQRKAQPAQPADEPAEKA PADEPAEKADEPMEH_______________ R K A E H - 5 0 0 2 0 2 4 0 1 0 0 2 1 0 4 0 0 0 0 0 0 0 21 2 2288.0379 P25786;F5GX11 P25786 243 263 PSMA1 Proteasome subunit alpha type-1 yes no 3;4 1.4125E-06 44.089 By MS/MS By MS/MS 1 2 0.74259 0.68052 27.655 3 Median 0.44474 0.43224 NaN 1 0 Median 0.76055 0.69664 3.3111 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5785400 3478600 2306800 2333400 1425600 907870 3452000 2053100 1398900 0 0 0 0 0 0 0 0 0 0 0 0 17007 2136 17737 88444;88445;88446 89954;89955;89956;89957;89958 89954 5 KAQQELEEQTR EELMERLKQIEEQTKKAQQELEEQTRRALE EQTKKAQQELEEQTRRALELEQERKRAQSE K K A T R R 1 1 0 0 0 3 3 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1358.679 P26038 P26038 360 370 MSN Moesin yes yes 2;3 6.9936E-05 72.652 By MS/MS By MS/MS 1 2 1.0536 0.96684 21.113 3 Median NaN NaN NaN 0 0 Median 1.0536 0.96684 NaN 1 0 Median 0.91054 0.96654 29.859 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12556000 6521100 6035100 0 0 0 2442900 1141100 1301800 10113000 5380000 4733300 0 0 0 0 0 0 0 0 0 17008 2139 17738 88447;88448;88449 89959;89960;89961 89959 3 KAQQELEEQTRR EELMERLKQIEEQTKKAQQELEEQTRRALE QTKKAQQELEEQTRRALELEQERKRAQSEA K K A R R A 1 2 0 0 0 3 3 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 12 2 1514.7801 P26038 P26038 360 371 MSN Moesin yes yes 3 1.6219E-06 101.39 By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 2 1 1 1.1474 1.1674 29.296 9 Median 1.1349 1.1457 9.7383 3 0 Median 1.1634 1.2869 NaN 1 0 Median 1.1474 1.2872 NaN 1 0 Median 1.7148 1.6524 57.383 2 0 Median 0.99796 1.1674 NaN 1 0 Median 0.95516 0.82866 NaN 1 0 Median 29603000 13656000 15947000 5500200 2553600 2946600 8995500 4058600 4936900 13868000 6456000 7412100 669890 306980 362910 359860 178900 180950 209850 102120 107720 17009 2139 17739 88450;88451;88452;88453;88454;88455;88456;88457;88458 89962;89963;89964;89965;89966 89963 5 KASGPPVSELITK VKKKAKKAGATAGKRKASGPPVSELITKAV KRKASGPPVSELITKAVAASKERSGVSLAA R K A T K A 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 2 1 0 0 1 0 0 13 1 1325.7555 P10412;P16402;P16403 P16402 35 47 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 4.5251E-53 229.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 10 8 15 16 0.93303 0.82006 32.176 56 Median 0.84526 0.81512 4.441 2 0 Median 1.3704 1.2521 19.754 7 0 Median 0.69563 0.70408 15.747 10 3 Median 1.6909 1.4714 30.301 6 0 Median 0.6119 0.66349 11.336 15 0 Median 0.98732 0.8843 26.229 16 2 Median 12321000000 6955800000 5365100000 131360000 67977000 63387000 54857000 25638000 29219000 563980000 336780000 227200000 277390000 116800000 160590000 7099500000 4274400000 2825100000 4193800000 2134200000 2059600000 17010 2028;1937;2029 17740 88459;88460;88461;88462;88463;88464;88465;88466;88467;88468;88469;88470;88471;88472;88473;88474;88475;88476;88477;88478;88479;88480;88481;88482;88483;88484;88485;88486;88487;88488;88489;88490;88491;88492;88493;88494;88495;88496;88497;88498;88499;88500;88501;88502;88503;88504;88505;88506;88507;88508;88509;88510;88511;88512;88513;88514;88515;88516 89967;89968;89969;89970;89971;89972;89973;89974;89975;89976;89977;89978;89979;89980;89981;89982;89983;89984;89985;89986;89987;89988;89989;89990;89991;89992;89993;89994;89995;89996;89997;89998;89999;90000;90001;90002;90003;90004;90005;90006;90007;90008;90009;90010;90011;90012;90013;90014;90015;90016;90017;90018;90019;90020;90021;90022;90023;90024;90025;90026;90027;90028;90029;90030;90031;90032;90033;90034;90035;90036;90037;90038;90039;90040;90041;90042;90043;90044;90045;90046;90047;90048;90049;90050;90051;90052;90053;90054;90055;90056;90057;90058;90059;90060;90061;90062;90063;90064;90065;90066;90067;90068;90069;90070;90071;90072;90073;90074;90075;90076;90077;90078;90079;90080;90081;90082;90083;90084;90085;90086;90087;90088;90089;90090;90091;90092;90093;90094;90095;90096;90097;90098;90099;90100;90101;90102;90103;90104;90105;90106;90107;90108;90109;90110;90111;90112;90113;90114;90115;90116;90117;90118;90119;90120;90121;90122;90123;90124;90125;90126;90127;90128;90129;90130;90131;90132;90133;90134;90135;90136;90137;90138;90139;90140;90141;90142;90143;90144;90145;90146;90147;90148 90081 182 KASGPPVSELITKAVAASK VKKKAKKAGATAGKRKASGPPVSELITKAV PPVSELITKAVAASKERSGVSLAALKKALA R K A S K E 4 0 0 0 0 0 1 1 0 1 1 3 0 0 2 3 1 0 0 2 0 0 19 2 1853.0622 P10412;P16402;P16403 P16402 35 53 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 1.2337E-06 51.819 By MS/MS By matching 2 1 0.60857 0.66585 18.066 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57548 0.62965 7.9062 2 0 Median 0.98789 0.84785 NaN 1 0 Median 24919000 15231000 9687700 0 0 0 0 0 0 0 0 0 0 0 0 23674000 14610000 9063500 1245400 621320 624110 17011 2028;1937;2029 17741 88517;88518;88519 90149;90150 90149 2 KASPPSGLWSPAYASH AASSPTSPNALPPARKASPPSGLWSPAYAS ASPPSGLWSPAYASH_______________ R K A S H - 3 0 0 0 0 0 0 1 1 0 1 1 0 0 3 4 0 1 1 0 0 0 16 1 1654.8104 Q8TEM1 Q8TEM1 1872 1887 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 5.5341E-05 49.482 By MS/MS By matching 2 1 0.7519 0.80432 27.235 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6529 0.71223 17.196 2 0 Median 1.1945 1.0863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16825000 10190000 6635500 0 0 0 0 0 0 15997000 9736300 6260400 828690 453660 375030 0 0 0 0 0 0 17012 3477 17742 88520;88521;88522 90151;90152;90153 90153 3 KASVVTLPVYLNFTR PLTQLRWVKQTNTEKKASVVTLPVYLNFTR KASVVTLPVYLNFTRADLIFTVDFEIATKE K K A T R A 1 1 1 0 0 0 0 0 0 0 2 1 0 1 1 1 2 0 1 3 0 0 15 1 1706.9719 Q14204;A0A2R8Y706 Q14204 4601 4615 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 9.0559E-05 62.861 By MS/MS By MS/MS By matching 2 2 1 0.88386 0.91341 7.8049 5 Median 0.9092 0.93802 3.7592 2 1 Median NaN NaN NaN 0 0 Median 0.78691 0.90977 11.617 2 0 Median 0.8945 0.83319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19725000 10679000 9045900 12285000 6698100 5587000 0 0 0 7366700 3941500 3425200 73246 39480 33766 0 0 0 0 0 0 17013 2865 17743 88523;88524;88525;88526;88527 90154;90155;90156;90157;90158;90159 90154 6 KATATISAKPQITNPK QRPKADDTSAATIEKKATATISAKPQITNP ATATISAKPQITNPKAEITRFVPTALRVRR K K A P K A 3 0 1 0 0 1 0 0 0 2 0 3 0 0 2 1 3 0 0 0 0 0 16 2 1667.957 Q9Y2W2 Q9Y2W2 557 572 WBP11 WW domain-binding protein 11 yes yes 3 0.068896 10.057 By MS/MS By matching 1 1 0.79183 0.91161 15.336 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67051 0.81792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93511 1.016 NaN 1 0 Median 1494200 807540 686660 0 0 0 0 0 0 1081100 614550 466560 0 0 0 0 0 0 413090 192990 220100 17014 4394 17744 88528;88529 90160 90160 1 KATDAEADVASLNR ______________________________ ______________________________ - K A N R R 4 1 1 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 14 1 1459.7267 H0YKX5 H0YKX5 1 14 TPM1 no no 3 0.050801 22.833 By MS/MS By MS/MS 1 1 0.92634 1.0047 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92634 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median 5161200 2647000 2514200 0 0 0 0 0 0 0 0 0 0 0 0 5161200 2647000 2514200 0 0 0 + 17015 1193 17745 88530;88531 90161;90162 90162 2 KATDAEADVASLNRR ______________________________ KATDAEADVASLNRRIQLVEEELDRAQERL - K A R R I 4 2 1 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 15 2 1615.8278 H0YKX5 H0YKX5 1 15 TPM1 no no 3 0.00011217 55.186 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.92388 1.0742 12.893 4 Median 1.101 1.1539 NaN 1 0 Median 0.85237 1 NaN 1 0 Median 0.98632 1.1583 NaN 1 0 Median 0.86539 0.88526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12758000 6689000 6069100 3134600 1365700 1768900 2322000 1325300 996640 2813100 1599800 1213300 4488500 2398300 2090200 0 0 0 0 0 0 + 17016 1193 17746 88532;88533;88534;88535 90163;90164;90165;90166;90167 90164 5 KATLELTHNWGTEDDETQSYHNGNSDPR IPKEKDEKIAWALSRKATLELTHNWGTEDD DDETQSYHNGNSDPRGFGHIGIAVPDVYSA R K A P R G 1 1 3 3 0 1 3 2 2 0 2 1 0 0 1 2 4 1 1 0 0 0 28 1 3214.4188 Q04760 Q04760 96 123 GLO1 Lactoylglutathione lyase yes yes 4;5 5.2013E-14 54.152 By MS/MS By MS/MS 2 2 0.98055 0.96189 9.3787 4 Median 0.84797 0.88307 9.4407 2 0 Median 1.085 1.0035 3.3453 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80834000 41402000 39432000 62474000 32762000 29713000 18360000 8640100 9719500 0 0 0 0 0 0 0 0 0 0 0 0 17017 2712 17747 88536;88537;88538;88539 90168;90169;90170;90171;90172;90173 90172 6 KATVNLLGEEK DKAKETADAITKEAKKATVNLLGEEKKST_ KEAKKATVNLLGEEKKST____________ K K A E K K 1 0 1 0 0 0 2 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1200.6714 Q00765 Q00765 176 186 REEP5 Receptor expression-enhancing protein 5 yes yes 2;3 1.6908E-06 113.22 By MS/MS By MS/MS 3 2 1.2861 1.2846 20.108 4 Median 1.2861 1.2846 3.783 2 1 Median 1.3994 1.2377 34.421 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36515000 12955000 23561000 22501000 7257700 15244000 14014000 5697200 8316800 0 0 0 0 0 0 0 0 0 0 0 0 17018 2678 17748 88540;88541;88542;88543;88544 90174;90175;90176;90177;90178 90175 5 KATVNLLGEEKK DKAKETADAITKEAKKATVNLLGEEKKST_ EAKKATVNLLGEEKKST_____________ K K A K K S 1 0 1 0 0 0 2 1 0 0 2 3 0 0 0 0 1 0 0 1 0 0 12 2 1328.7664 Q00765 Q00765 176 187 REEP5 Receptor expression-enhancing protein 5 yes yes 2;3 0.00024466 67.726 By MS/MS By MS/MS By matching 2 2 1 1.0776 0.99899 17.404 5 Median 1.1177 1.2104 5.1658 2 0 Median 1.0843 0.97846 2.9355 2 0 Median NaN NaN NaN 0 0 Median 0.8761 0.80557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26650000 11916000 14734000 12634000 5656900 6977000 13751000 6125800 7625100 0 0 0 265130 133370 131760 0 0 0 0 0 0 17019 2678 17749 88545;88546;88547;88548;88549 90179;90180;90181;90182;90183 90180 5 KAVAISLPK LTKEQLKIWMGKMQKKAVAISLPKGVVEVT MGKMQKKAVAISLPKGVVEVTHDLQKHLAG K K A P K G 2 0 0 0 0 0 0 0 0 1 1 2 0 0 1 1 0 0 0 1 0 0 9 1 925.59605 P50454;E9PPV6;E9PKH2 P50454 300 308 SERPINH1 Serpin H1 yes no 2 0.0020436 81.525 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1.041 1.0335 26.486 8 Median 0.92369 0.87615 12.607 2 0 Median 1.1817 1.0926 11.888 2 0 Median 1.0146 1.0633 NaN 1 0 Median 0.9167 0.84305 53.999 2 0 Median NaN NaN NaN 0 0 Median 1.468 1.2741 NaN 1 0 Median 25223000 11698000 13525000 4961600 2471700 2490000 3401200 1519700 1881500 6588100 3116200 3471900 9852200 4425400 5426800 0 0 0 420080 164970 255110 17020 2414 17750 88550;88551;88552;88553;88554;88555;88556;88557 90184;90185;90186;90187 90187 4 KAVDALLTHCK AAPTARKQLDKEQVRKAVDALLTHCKSRKN EQVRKAVDALLTHCKSRKNNYGLLLNENES R K A C K S 2 0 0 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1254.6754 O76021;J3QSV6;I3L3C4;I3L3U9;I3L1A3 O76021 38 48 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 8.8343E-05 74.162 By MS/MS 4 1.0671 1.1891 13.053 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0671 1.1891 13.053 4 1 Median NaN NaN NaN 0 0 Median 18165000 8863500 9301400 0 0 0 0 0 0 0 0 0 0 0 0 18165000 8863500 9301400 0 0 0 17021 1716 17751 88558;88559;88560;88561 90188;90189;90190;90191;90192 90190 5 KAVDEAADALLK SAQWRTVEGALKERRKAVDEAADALLKAKE ERRKAVDEAADALLKAKEELEKMKSVIENA R K A L K A 4 0 0 2 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1242.682 Q16891;B9A067;C9J406;H7C463 Q16891 286 297 IMMT MICOS complex subunit MIC60 yes no 2 0.00068874 88.338 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.1126 1.0446 27.693 4 Median 0.62858 0.64582 NaN 1 1 Median 1.24 1.2008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0015 0.97833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.236 1.1153 NaN 1 0 Median 23904000 12450000 11454000 11931000 7726600 4204400 9216500 3568200 5648300 0 0 0 549720 284280 265440 0 0 0 2207200 871300 1335900 17022 3001 17752 88562;88563;88564;88565 90193;90194;90195 90194 3 KAVLFCLSEDKK KVRKSSTPEEVKKRKKAVLFCLSEDKKNII KRKKAVLFCLSEDKKNIILEEGKEILVGDV K K A K K N 1 0 0 1 1 0 1 0 0 0 2 3 0 1 0 1 0 0 0 1 0 0 12 2 1436.7697 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 34 45 CFL1 Cofilin-1 yes no 2;3 1.5328E-06 102.66 By MS/MS 2 1.1052 0.99729 0.3842 2 Median NaN NaN NaN 0 0 Median 1.1052 0.99729 0.3842 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12526000 5987200 6538600 0 0 0 12526000 5987200 6538600 0 0 0 0 0 0 0 0 0 0 0 0 17023 2118 17753 88566;88567 90196;90197;90198 90197 3 KAVLMIR IDASRLVYDGIRDIRKAVLMIRTPEELDDS YDGIRDIRKAVLMIRTPEELDDSDFETEDF R K A I R T 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 7 1 829.52078 P35221;G3XAM7;P26232;A0A0A0MTJ6;A0A0A0MRI5 P35221 627 633 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 no no 2 0.062888 43 By MS/MS 1 1.1111 1.1131 NaN 1 Median NaN NaN NaN 0 0 Median 1.1111 1.1131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1471200 664290 806940 0 0 0 1471200 664290 806940 0 0 0 0 0 0 0 0 0 0 0 0 17024 2232;2141 17754 88568 90199 90199 1 KAVLVALK NVPPPFLGLPRFEARKAVLVALKERGLFRG LPRFEARKAVLVALKERGLFRGIEDNPMVV R K A L K E 2 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 8 1 840.57967 P26640;A0A140T936 P26640 638 645 VARS Valine--tRNA ligase yes no 2 0.0023009 143.85 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2289 1.2831 14.652 4 Median 0.95036 1.0071 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1894 1.3611 NaN 1 0 Median 1.2698 1.2096 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5261 1.3838 NaN 1 0 Median 8819800 3863600 4956200 1163300 501860 661390 0 0 0 2853200 1428700 1424500 4274000 1713500 2560400 0 0 0 529420 219530 309890 17025 2148 17755 88569;88570;88571;88572 90200;90201;90202 90202 3 KAVPKEDIYSGGGGGGSR VVKFHPIQGHRVEVKKAVPKEDIYSGGGGG PKEDIYSGGGGGGSRSSRGGRGGRGRGGGR K K A S R S 1 1 0 1 0 0 1 6 0 1 0 2 0 0 1 2 0 0 1 1 0 0 18 2 1733.8697 Q13151 Q13151 172 189 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 0.028076 15.254 By MS/MS 1 1.0322 1.2031 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0322 1.2031 NaN 1 0 Median NaN NaN NaN 0 0 Median 2102900 943880 1159000 0 0 0 0 0 0 0 0 0 0 0 0 2102900 943880 1159000 0 0 0 17026 2790 17756 88573 90203 90203 1 KAVQGGGATPVVGAVQGPVPGMPPMTQAPR REKRKPKSQETPATKKAVQGGGATPVVGAV QGPVPGMPPMTQAPRIMHHMPGQPPYMPPP K K A P R I 4 1 0 0 0 3 0 6 0 0 0 1 2 0 6 0 2 0 0 5 0 0 30 1 2854.4946 P09012;M0R268;M0QZG7 P09012 123 152 SNRPA U1 small nuclear ribonucleoprotein A yes no 3 1.2371E-92 162.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 4 0.3688 0.39918 9.2143 10 Median 0.4081 0.41077 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.3688 0.39883 4.4707 4 4 Median 0.5194 0.49017 NaN 1 1 Median 0.34844 0.37734 8.9509 4 2 Median NaN NaN NaN 0 0 Median 218320000 171680000 46642000 15323000 12396000 2927600 0 0 0 143590000 113550000 30042000 5397100 4168400 1228700 54015000 41570000 12444000 0 0 0 17027 1910 17757;17758;17759 88574;88575;88576;88577;88578;88579;88580;88581;88582;88583 90204;90205;90206;90207;90208;90209;90210;90211;90212;90213;90214;90215;90216;90217;90218;90219;90220;90221 90207 686;687 18 KAVVVCPKDEDYK AAQRRKMCLFAGFQRKAVVVCPKDEDYKQR QRKAVVVCPKDEDYKQRTQKKAEVEGKDLP R K A Y K Q 1 0 0 2 1 0 1 0 0 0 0 3 0 0 1 0 0 0 1 3 0 0 13 2 1549.781 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 602 614 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.036898 19.839 By MS/MS 1 0.77479 0.86378 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77479 0.86378 NaN 1 0 Median NaN NaN NaN 0 0 Median 3430700 2050400 1380300 0 0 0 0 0 0 0 0 0 0 0 0 3430700 2050400 1380300 0 0 0 17028 2680 17760 88584 90222 90222 1 KAYADFYR GVAALYKFRVADQRKKAYADFYRNYDVMKD RVADQRKKAYADFYRNYDVMKDFEEMRKAG K K A Y R N 2 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 1 1032.5029 P09669 P09669 47 54 COX6C Cytochrome c oxidase subunit 6C yes yes 2 0.0078942 75.109 By MS/MS 1 0.6715 0.65847 NaN 1 Median 0.6715 0.65847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25916000 14970000 10946000 25916000 14970000 10946000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17029 1921 17761 88585 90223;90224 90223 2 KAYELALYLR IVMGKEGVHGGTLNKKAYELALYLRRSDV_ GTLNKKAYELALYLRRSDV___________ K K A L R R 2 1 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 2 0 0 0 10 1 1238.7023 C9J0J7;G5E9Q6 C9J0J7 78 87 PFN2 Profilin yes no 2;3 0.00052602 81.594 By MS/MS By matching By matching 2 1 1 1.0599 1.0393 8.8972 4 Median 1.0599 1.0393 6.1273 2 0 Median 1.2655 1.1173 NaN 1 0 Median 0.8766 0.91792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17049000 8319900 8729000 12350000 6145400 6204500 3681800 1683800 1998000 1017200 490650 526580 0 0 0 0 0 0 0 0 0 17030 668 17762 88586;88587;88588;88589 90225;90226;90227 90227 3 KAYGQALAK PSLPSYKVGDKIATRKAYGQALAKLGHASD DKIATRKAYGQALAKLGHASDRIIALDGDT R K A A K L 3 0 0 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 9 1 948.53927 P29401;A0A0B4J1R6 P29401 319 327 TKT Transketolase yes no 2 0.00098115 104.37 By MS/MS By MS/MS 1 3 1.069 1.0036 20.673 4 Median 1.0438 0.98566 NaN 1 0 Median 1.0947 1.0219 24.109 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16696000 7849000 8847200 5063100 2528800 2534300 11633000 5320200 6313000 0 0 0 0 0 0 0 0 0 0 0 0 17031 2173 17763 88590;88591;88592;88593 90228;90229;90230;90231;90232;90233 90233 6 KCAADLGLNK DDDESLLGHLMIVGKKCAADLGLNKGYRMV MIVGKKCAADLGLNKGYRMVVNEGSDGGQS K K C N K G 2 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1088.5648 P49773 P49773 83 92 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 2 0.018753 40.352 By MS/MS 1 1.0199 0.88416 NaN 1 Median NaN NaN NaN 0 0 Median 1.0199 0.88416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866700 1136300 1730500 0 0 0 2866700 1136300 1730500 0 0 0 0 0 0 0 0 0 0 0 0 17032 2399 17764 88594 90234 90234 1 KCYEMASHLR LLMGKEGVHGGLINKKCYEMASHLRRSQY_ GLINKKCYEMASHLRRSQY___________ K K C L R R 1 1 0 0 1 0 1 0 1 0 1 1 1 0 0 1 0 0 1 0 0 0 10 1 1293.5958 P07737;K7EJ44;CON__P02584 P07737 127 136 PFN1 Profilin-1 yes no 2;3 0.00019562 71.03 By MS/MS By MS/MS 2 2 1.1303 1.0517 21.235 4 Median 1.2641 1.2583 19.233 2 0 Median 1.0602 0.93601 10.362 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17679000 7912000 9767100 850830 376180 474660 16828000 7535800 9292400 0 0 0 0 0 0 0 0 0 0 0 0 17033 1889 17765 88595;88596;88597;88598 90235;90236;90237;90238;90239 90237 5 KDAEAWFNEK NNMRSQYEQLAEQNRKDAEAWFNEKSKELT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI R K D E K S 2 0 1 1 0 0 2 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 10 1 1236.5775 P13645;CON__P13645;CON__Q7Z3Y7;Q7Z3Y7 P13645 334 343 KRT10;KRT28 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28 yes no 2;3 8.957E-12 145.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 13 6 2 0.11707 0.12638 151.92 15 Median 0.21764 0.21404 67.809 3 3 Median 0.28919 0.27586 59.757 2 2 Median NaN NaN NaN 0 0 Median 0.065075 0.05943 213.64 6 6 Median 0.10117 0.1087 106.06 3 3 Plateau 0.067195 0.059963 NaN 1 1 Median 130430000 113680000 16750000 27954000 20634000 7320700 16553000 11944000 4609100 14632000 14632000 0 36714000 32788000 3925500 32274000 31462000 812210 2301600 2219000 82569 + 17034 756 17766 88599;88600;88601;88602;88603;88604;88605;88606;88607;88608;88609;88610;88611;88612;88613;88614;88615;88616;88617;88618;88619;88620;88621;88622;88623;88624;88625;88626;88627;88628 90240;90241;90242;90243;90244;90245;90246;90247;90248;90249;90250;90251;90252;90253;90254;90255;90256;90257;90258;90259;90260;90261;90262;90263;90264;90265;90266;90267;90268;90269 90261 30 KDAEAWFTSR SDMRSQYEVMAEQNRKDAEAWFTSRTEELN AEQNRKDAEAWFTSRTEELNREVAGHTEQL R K D S R T 2 1 0 1 0 0 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 10 1 1209.5778 CON__P08727;P08727;K7EMS3 CON__P08727 265 274 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 9.8152E-05 76.302 By matching By MS/MS By matching By MS/MS 1 2 1 2 0.97611 1.022 14.79 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0949 1.243 15.893 2 0 Median 1.1227 0.98829 NaN 1 0 Median 0.92016 0.99469 3.823 2 0 Median NaN NaN NaN 0 0 Median 18528000 8302500 10225000 0 0 0 546020 158730 387290 10531000 4422100 6109300 729510 322670 406840 6720600 3399000 3321600 0 0 0 + 17035 752 17767 88629;88630;88631;88632;88633;88634 90270;90271;90272 90270 3 KDAFADAVQR GGPSQPPGGGGPGIRKDAFADAVQRARQIA GPGIRKDAFADAVQRARQIAAKIGGDAATT R K D Q R A 3 1 0 2 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 10 1 1119.5673 Q92945;A0A087WTP3;M0R0I5 Q92945 71 80 KHSRP Far upstream element-binding protein 2 yes no 2 0.00048018 85.731 By MS/MS By MS/MS 1 1 0.93784 0.97106 5.4351 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8222 0.93445 NaN 1 1 Median 1.0697 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5763500 3047300 2716300 0 0 0 0 0 0 2718200 1523000 1195200 3045300 1524200 1521100 0 0 0 0 0 0 17036 3568 17768 88635;88636 90273;90274;90275 90275 3 KDDALELQSHAK EVALKGEGTEEAECKKDDALELQSHAKSPP ECKKDDALELQSHAKSPPSPVEREMVVQVE K K D A K S 2 0 0 2 0 1 1 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 12 1 1353.6888 Q02952 Q02952 1316 1327 AKAP12 A-kinase anchor protein 12 yes yes 3 0.0010406 43.761 By MS/MS By matching 2 1 1.1487 1.2121 71.333 3 Plateau NaN NaN NaN 0 0 Median 0.53904 0.52821 74.682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1487 1.2121 NaN 1 0 Median NaN NaN NaN 0 0 Median 9495200 4663200 4832000 0 0 0 2868600 1503500 1365100 0 0 0 0 0 0 6626600 3159700 3466900 0 0 0 17037 2705 17769 88637;88638;88639 90276 90276 1 KDDEENYLDLFSHK LLTAEIEKIQKGDSKKDDEENYLDLFSHKN KKDDEENYLDLFSHKNMKLKERVLIPVKQY K K D H K N 0 0 1 3 0 0 2 0 1 0 2 2 0 1 0 1 0 0 1 0 0 0 14 1 1751.8002 Q07666 Q07666 139 152 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3;4 7.0707E-17 191.53 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 6 4 2 1.2565 1.1103 25.294 15 Median 1.2642 1.194 NaN 1 1 Median 1.2656 1.1697 22.441 2 0 Median 0.81704 0.84686 36.156 6 0 Median 1.2973 1.2505 7.3735 4 0 Median 0.82085 0.8972 4.7052 2 0 Median NaN NaN NaN 0 0 Median 450870000 228750000 222130000 4922200 2149300 2772900 2284800 1036000 1248800 413670000 211190000 202490000 14633000 6165100 8468000 15357000 8209300 7148100 0 0 0 17038 2731 17770 88640;88641;88642;88643;88644;88645;88646;88647;88648;88649;88650;88651;88652;88653;88654 90277;90278;90279;90280;90281;90282;90283;90284;90285;90286;90287;90288;90289;90290;90291;90292;90293;90294;90295 90284 18 KDDEVQVVR KELRQKYNVRSMPIRKDDEVQVVRGHYKGQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R K D V R G 0 1 0 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1086.5669 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3 P61254 51 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.02158 43.808 By matching By MS/MS By MS/MS By matching 1 1 1 2 0.96571 0.85486 21.804 5 Median 0.84938 0.84345 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67387 0.69437 NaN 1 0 Median 0.96571 0.85486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3503 1.1466 3.3496 2 0 Median 5022000 2688500 2333400 1073900 584950 488980 0 0 0 2783500 1572700 1210800 435120 231970 203150 0 0 0 729440 298880 430560 17039 2554 17771 88655;88656;88657;88658;88659 90296;90297;90298 90296 3 KDDPTLLSSGR DHIKELVDDSVNNVRKDDPTLLSSGRVQLV NNVRKDDPTLLSSGRVQLVVGDGRMGYAEE R K D G R V 0 1 0 2 0 0 0 1 0 0 2 1 0 0 1 2 1 0 0 0 0 0 11 1 1187.6146 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8 A0A0A0MRJ6 183 193 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2;3 0.00019007 107.79 By MS/MS By MS/MS By MS/MS 2 2 2 0.92241 0.96671 3.2288 3 Median 0.92241 0.96686 NaN 1 0 Median 1.0326 0.96671 NaN 1 0 Median 0.88095 0.9142 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14264000 5975300 8288400 6655100 2807700 3847400 2003300 601960 1401400 5605300 2565700 3039600 0 0 0 0 0 0 0 0 0 17040 163 17772 88660;88661;88662;88663;88664;88665 90299;90300;90301;90302;90303;90304;90305;90306 90304 8 KDDPVTNLNNAFEVAEK IHRHRPELIEYDKLRKDDPVTNLNNAFEVA DPVTNLNNAFEVAEKYLDIPKMLDAEDIVN R K D E K Y 2 0 3 2 0 0 2 0 0 0 1 2 0 1 1 0 1 0 0 2 0 0 17 1 1902.9323 O43707;K7EJH8 O43707 217 233 ACTN4 Alpha-actinin-4 yes no 2;3 3.2667E-05 71.176 By MS/MS By matching By MS/MS 2 3 1 0.85699 0.89508 20.434 6 Median 0.85699 0.89508 1.5388 2 0 Median 0.7016 0.66437 21.231 3 0 Median 0.88798 1.0154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47652000 25360000 22291000 37770000 19757000 18013000 5778900 3084600 2694300 4102400 2518700 1583700 0 0 0 0 0 0 0 0 0 17041 1585 17773 88666;88667;88668;88669;88670;88671 90307;90308;90309;90310;90311;90312 90310 6 KDDTDDEIAK FDRGTLSGWILSKAKKDDTDDEIAKYDGKW LSKAKKDDTDDEIAKYDGKWEVEEMKESKL K K D A K Y 1 0 0 4 0 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 10 1 1148.5197 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7;D6RAQ8 P27824 90 99 CANX Calnexin yes no 2 0.0031065 61.161 By matching By MS/MS By matching By matching 1 3 1 1 1.046 1.0626 11.774 6 Median 1.0287 1.071 NaN 1 0 Median 1.0636 1.0054 18.287 3 0 Median 0.92814 1.103 NaN 1 0 Median 1.0791 1.0542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2616500 1156000 1460500 430880 214860 216030 1861700 779390 1082300 212030 117450 94576 111910 44313 67599 0 0 0 0 0 0 17042 2158 17774 88672;88673;88674;88675;88676;88677 90313;90314;90315;90316;90317;90318 90318 6 KDEDPENKIEFK KEEEELMEKPQKETKKDEDPENKIEFKTRL ETKKDEDPENKIEFKTRLGRNVYRMLFKSK K K D F K T 0 0 1 2 0 0 3 0 0 1 0 3 0 1 1 0 0 0 0 0 0 0 12 2 1490.7253 Q13123;E7EQZ7;D6REL4 Q13123 198 209 IK Protein Red yes no 3 4.3046E-05 89.301 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.81799 0.88877 20.337 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84436 0.97618 NaN 1 0 Median 0.73035 0.70467 25.347 2 0 Median 0.84755 0.94489 NaN 1 0 Median 0.81799 0.88877 NaN 1 0 Median 29457000 14992000 14465000 0 0 0 0 0 0 9485500 4580700 4904800 4160400 2243500 1916900 14606000 7686400 6919100 1205700 481730 723990 17043 2787 17775 88678;88679;88680;88681;88682 90319;90320;90321;90322 90320 4 KDEELDPMDPSSYSDAPR EELAPYPKSKKAVSRKDEELDPMDPSSYSD ELDPMDPSSYSDAPRGTWSTGLPKRNEAKT R K D P R G 1 1 0 4 0 0 2 0 0 0 1 1 1 0 3 3 0 0 1 0 0 0 18 1 2050.879 O60828;H7C053 O60828 197 214 PQBP1 Polyglutamine-binding protein 1 yes no 3 1.3817E-15 110.74 By MS/MS By matching 1 1 0.62535 0.63359 3.9376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56649 0.61619 NaN 1 0 Median 0.69033 0.65148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5887500 3285400 2602000 0 0 0 0 0 0 5596800 3135000 2461800 290670 150410 140260 0 0 0 0 0 0 17044 1633 17776 88683;88684 90323 90323 1 KDEESGGGSNPFQHLEK ______________________________ EESGGGSNPFQHLEKSAVLQEARVFNETPI K K D E K S 0 0 1 1 0 1 3 3 1 0 1 2 0 1 1 2 0 0 0 0 0 0 17 1 1857.8493 Q9Y678;D6RG17 Q9Y678 8 24 COPG1 Coatomer subunit gamma-1 yes no 3 0.050549 9.3701 By MS/MS 1 0.71033 0.687 NaN 1 Median NaN NaN NaN 0 0 Median 0.71033 0.687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2057500 1118000 939490 0 0 0 2057500 1118000 939490 0 0 0 0 0 0 0 0 0 0 0 0 17045 4481 17777 88685 90324 90324 1 KDEESGSGSNPFQHLEK ______________________________ EESGSGSNPFQHLEKSAVLQEARIFNETPI K K D E K S 0 0 1 1 0 1 3 2 1 0 1 2 0 1 1 3 0 0 0 0 0 0 17 1 1887.8599 Q9UBF2 Q9UBF2 8 24 COPG2 Coatomer subunit gamma-2 yes yes 3 0.051451 9.1834 By MS/MS 1 1.0875 1.0515 NaN 1 Median NaN NaN NaN 0 0 Median 1.0875 1.0515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1407400 629430 778010 0 0 0 1407400 629430 778010 0 0 0 0 0 0 0 0 0 0 0 0 17046 4238 17778 88686 90325;90326 90325 2 KDEIENSIVHR ELIQRRRTRIGYSFKKDEIENSIVHRVQGV YSFKKDEIENSIVHRVQGVFQRASAKWKDD K K D H R V 0 1 1 1 0 0 2 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 11 1 1338.6892 Q9NYH9 Q9NYH9 81 91 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 3 0.0049838 34.768 By MS/MS 1 0.80186 0.83368 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80186 0.83368 NaN 1 0 Median NaN NaN NaN 0 0 Median 3057100 1561400 1495700 0 0 0 0 0 0 0 0 0 0 0 0 3057100 1561400 1495700 0 0 0 17047 4176 17779 88687 90327 90327 1 KDEKTDTLEDLFPTTK LNAVDALIDSMSLAKKDEKTDTLEDLFPTT DEKTDTLEDLFPTTKIPNPRFQRLFQCLLH K K D T K I 0 0 0 3 0 0 2 0 0 0 2 3 0 1 1 0 4 0 0 0 0 0 16 2 1879.9415 P13010 P13010 466 481 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.00041599 38.613 By MS/MS By MS/MS By matching By matching 1 3 1 1 0.89742 0.97974 18.566 6 Median 0.99423 0.97144 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77675 0.89801 9.7116 3 0 Median 1.3046 1.3839 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0309 1.1202 NaN 1 0 Median 55726000 30227000 25499000 17805000 9205800 8599100 0 0 0 37089000 20648000 16441000 625780 275010 350770 0 0 0 206350 98148 108200 17048 1986 17780 88688;88689;88690;88691;88692;88693 90328;90329;90330;90331;90332;90333 90329 6 KDELSDWSLAGEDDRDSR TNSELSNPSETESERKDELSDWSLAGEDDR LSDWSLAGEDDRDSRHQRDSRRRPGGRGRS R K D S R H 1 2 0 5 0 0 2 1 0 0 2 1 0 0 0 3 0 1 0 0 0 0 18 2 2092.9298 B4DXZ6;P51114;E7EU85;E9PFF5;H7C4S4 B4DXZ6 403 420 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.0011942 29.766 By matching By MS/MS 1 1 1.0471 1.1664 10.928 2 Median NaN NaN NaN 0 0 Median 1.1392 1.2601 NaN 1 0 Median 0.96241 1.0797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6899100 3360700 3538400 0 0 0 643030 295240 347790 6256000 3065500 3190600 0 0 0 0 0 0 0 0 0 17049 608 17781 88694;88695 90334 90334 1 KDEQEHEFYK VLAKDFEKAYKTVIKKDEQEHEFYK_____ KTVIKKDEQEHEFYK_______________ K K D Y K - 0 0 0 1 0 1 3 0 1 0 0 2 0 1 0 0 0 0 1 0 0 0 10 1 1351.6044 P43686 P43686 409 418 PSMC4 26S protease regulatory subunit 6B yes yes 3 0.0012019 51.092 By matching By MS/MS By matching By matching 2 2 1 1 1.165 1.1677 10.51 6 Median 1.098 1.0843 12.703 2 0 Median 1.1612 1.074 9.6087 2 0 Median 1.1843 1.2621 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1632 1.2434 NaN 1 0 Median NaN NaN NaN 0 0 Median 12105000 5543100 6561900 6195200 2769400 3425800 5049700 2407900 2641800 263400 121410 141990 0 0 0 596670 244440 352230 0 0 0 17050 2327 17782 88696;88697;88698;88699;88700;88701 90335;90336 90335 2 KDFDTALK QALKEKELGNDAYKKKDFDTALKHYDKAKE GNDAYKKKDFDTALKHYDKAKELDPTNMTY K K D L K H 1 0 0 2 0 0 0 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 8 1 936.49165 P31948 P31948 239 246 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0037132 106.68 By MS/MS 2 1.1175 1.0609 19.818 2 Median NaN NaN NaN 0 0 Median 1.1175 1.0609 19.818 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10079000 4409700 5668800 0 0 0 10079000 4409700 5668800 0 0 0 0 0 0 0 0 0 0 0 0 17051 2212 17783 88702;88703 90337;90338 90338 2 KDGLVSLLTTSEGADEPQR PMALELMTVLVGSPRKDGLVSLLTTSEGAD VSLLTTSEGADEPQRLQFPLPTAQRSLEPG R K D Q R L 1 1 0 2 0 1 2 2 0 0 3 1 0 0 1 2 2 0 0 1 0 0 19 1 2015.0171 P51570;K7ERJ9 P51570 69 87 GALK1 Galactokinase yes no 3 2.6714E-10 92.474 By MS/MS By MS/MS 1 1 0.99702 1.0311 16.984 2 Median NaN NaN NaN 0 0 Median 1.2368 1.1627 NaN 1 0 Median 0.80376 0.91446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14063000 6793000 7269800 0 0 0 5371500 2134900 3236600 8691300 4658100 4033200 0 0 0 0 0 0 0 0 0 17052 2434 17784 88704;88705 90339;90340;90341 90339 3 KDHNIPGELER VIQYLAHVASSHKGRKDHNIPGELERQLLQ HKGRKDHNIPGELERQLLQANPILESFGNA R K D E R Q 0 1 1 1 0 0 2 1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 11 1 1306.663 P35580 P35580 206 216 MYH10 Myosin-10 yes yes 3 0.0089582 28.806 By MS/MS By matching By MS/MS 1 1 1 1.1283 1.0765 22.962 3 Plateau 0.97785 1.0011 NaN 1 0 Median 1.1283 1.0765 NaN 1 0 Median 0.5909 0.70094 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3748200 1782500 1965800 1135000 473430 661610 1883400 841940 1041500 729760 467090 262670 0 0 0 0 0 0 0 0 0 17053 2245 17785 88706;88707;88708 90342;90343;90344 90342 3 KDHPFGFVAVPTK ______________________________ WRKDHPFGFVAVPTKNPDGTMNLMNWECAI R K D T K N 1 0 0 1 0 0 0 1 1 0 0 2 0 2 2 0 1 0 0 2 0 0 13 1 1441.7718 H3BPC4;H3BQQ9;B0QYN7;P63279 H3BPC4 14 26 UBE2I SUMO-conjugating enzyme UBC9 yes no 2;3 4.1953E-08 130.1 By MS/MS By matching By MS/MS By MS/MS 2 1 4 2 0.77413 0.7512 67.196 9 Median 0.75244 0.74876 3.7448 2 0 Median 0.90633 0.80161 NaN 1 0 Median 0.68551 0.68113 104.91 4 1 Median 0.86678 0.78092 5.4886 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 205450000 110300000 95150000 60266000 33548000 26717000 8987200 5340000 3647200 120580000 62150000 58430000 15621000 9264800 6356100 0 0 0 0 0 0 17054 558 17786 88709;88710;88711;88712;88713;88714;88715;88716;88717 90345;90346;90347;90348;90349;90350;90351;90352;90353;90354;90355;90356;90357 90354 13 KDHRDNLEFFLAGIGR KRGLKPSCTIIPLMKKDHRDNLEFFLAGIG DHRDNLEFFLAGIGRLHLSGIDANPNALFP K K D G R L 1 2 1 2 0 0 1 2 1 1 2 1 0 2 0 0 0 0 0 0 0 0 16 2 1886.9751 P49327;A0A0U1RQF0 P49327 787 802 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.005602 26.148 By MS/MS By matching 1 1 0.98859 1.0726 19.718 2 Median 0.91442 0.93298 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0688 1.233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6697100 2755000 3942200 5761100 2222000 3539100 0 0 0 936040 532980 403060 0 0 0 0 0 0 0 0 0 17055 2377 17787 88718;88719 90358;90359 90359 2 KDILLVNDHLLNFVR AIRHDVIVSIVTAAKKDILLVNDHLLNFVR KDILLVNDHLLNFVRERTLDKRWRVRKEAM K K D V R E 0 1 2 2 0 0 0 0 1 1 4 1 0 1 0 0 0 0 0 2 0 0 15 1 1808.0309 Q9NTI5 Q9NTI5 380 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.00078964 37.156 By matching By MS/MS By matching 1 1 1 1.1528 1.1063 8.7518 3 Median NaN NaN NaN 0 0 Median 1.1528 1.1063 NaN 1 0 Median 0.85053 0.964 NaN 1 0 Median 1.1747 1.134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4997600 2697300 2300300 0 0 0 1040600 438930 601640 3879000 2218600 1660300 78025 39676 38350 0 0 0 0 0 0 17056 4107 17788 88720;88721;88722 90360;90361 90361 2 KDIPSFER ARDILEIGAQWSILRKDIPSFERYMAQLKC AQWSILRKDIPSFERYMAQLKCYYFDYKEQ R K D E R Y 0 1 0 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 1 990.51345 R4GMR5;P48556;K7EJR3 R4GMR5 96 103 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.0099878 75.213 By MS/MS 1 29.717 26.342 NaN 1 Median NaN NaN NaN 0 0 Median 29.717 26.342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15663000 944000 14719000 0 0 0 15663000 944000 14719000 0 0 0 0 0 0 0 0 0 0 0 0 17057 2362 17789 88723 90362 90362 1 KDLCNTHLMR TTLLNTSPEGWKLLKKDLCNTHLMRVLVQT WKLLKKDLCNTHLMRVLVQTLCEPASIGFN K K D M R V 0 1 1 1 1 0 0 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 10 1 1286.6224 P78527 P78527 1361 1370 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0011455 51.927 By MS/MS By MS/MS By matching 1 1 2 1.0707 1.13 14.707 4 Median NaN NaN NaN 0 0 Median 1.1671 1.1273 NaN 1 0 Median 0.98231 1.1327 NaN 1 0 Median 1.1356 1.0532 24.477 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2817000 1382600 1434400 0 0 0 1700600 813180 887400 726240 396550 329690 390140 172830 217310 0 0 0 0 0 0 17058 2647 17790 88724;88725;88726;88727 90363;90364 90364 2 KDLPPLLLK SSEAVSLLEEVITPRKDLPPLLLKLNERPA EVITPRKDLPPLLLKLNERPAERLDYLGVS R K D L K L 0 0 0 1 0 0 0 0 0 0 4 2 0 0 2 0 0 0 0 0 0 0 9 1 1035.6692 Q9H0A0;A0A087WV29 Q9H0A0 689 697 NAT10 N-acetyltransferase 10 yes no 2 0.0024818 78.113 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 2 0.88215 0.84258 8.9687 7 Median NaN NaN NaN 0 0 Median 1.0758 1.0062 NaN 1 0 Median 0.73428 0.84287 0.047634 2 0 Median 0.98679 0.93999 NaN 1 0 Median 0.75852 0.809 NaN 1 0 Median 0.88787 0.79814 0.12236 2 0 Median 22616000 11821000 10794000 0 0 0 2081200 971720 1109500 14402000 7721900 6680000 2753700 1375100 1378600 2163500 1137400 1026100 1215500 615290 600170 17059 3921 17791 88728;88729;88730;88731;88732;88733;88734;88735 90365;90366;90367;90368 90368 4 KDLSQLQENLK ENSNKSLSGELREVKKDLSQLQENLKISEN REVKKDLSQLQENLKISENMNLQFENQMNK K K D L K I 0 0 1 1 0 2 1 0 0 0 3 2 0 0 0 1 0 0 0 0 0 0 11 1 1314.7143 Q8IX12 Q8IX12 1088 1098 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2;3 0.00037495 102.52 By MS/MS By MS/MS 1 1 1.0309 1.0783 9.6005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0048 1.154 NaN 1 1 Median 1.0577 1.0075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7380200 3874700 3505500 0 0 0 0 0 0 5360800 2952400 2408400 2019300 922310 1097000 0 0 0 0 0 0 17060 3331 17792 88736;88737 90369;90370 90369 2 KDLTEYLSR DGKMFIGGLSWDTSKKDLTEYLSRFGEVVD SWDTSKKDLTEYLSRFGEVVDCTIKTDPVT K K D S R F 0 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 9 1 1123.5873 A0A087WUK2;O14979 A0A087WUK2 162 170 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 0.00059396 130.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3493 1.3246 7.6723 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2369 1.3407 NaN 1 0 Median 1.7025 1.4776 NaN 1 0 Median 1.1188 1.2283 NaN 1 0 Median 1.4719 1.3087 NaN 1 0 Median 75876000 34852000 41024000 0 0 0 0 0 0 16060000 7698400 8361500 7577900 2924100 4653800 46315000 21825000 24490000 5922800 2404200 3518600 17061 32 17793 88738;88739;88740;88741 90371;90372;90373;90374;90375;90376;90377 90372 7 KDLYANTVLSGGTTMYPGIADR ETTFNSIMKCDVDIRKDLYANTVLSGGTTM VLSGGTTMYPGIADRMQKEITALAPSTMKI R K D D R M 2 1 1 2 0 0 0 3 0 1 2 1 1 0 1 1 3 0 2 1 0 0 22 1 2342.1576 P63261;P60709;A0A2R8Y793 P63261 291 312 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2;3 1.4605E-207 314.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 10 9 6 2 6 3 0.92924 0.8947 15.52 36 Median 0.9557 1.0248 9.296 10 1 Median 0.98984 0.92485 7.7635 9 0 Median 0.69918 0.79842 7.1662 6 1 Median 1.0528 0.92344 2.7497 2 0 Median 0.78682 0.85581 20.848 6 0 Median 0.93197 0.85861 24.312 3 0 Median 1626300000 834240000 792020000 944310000 435990000 508330000 34258000 16399000 17858000 582450000 347000000 235450000 6323100 2896500 3426600 57809000 31489000 26320000 1116500 470700 645770 17062 2625 17794;17795 88742;88743;88744;88745;88746;88747;88748;88749;88750;88751;88752;88753;88754;88755;88756;88757;88758;88759;88760;88761;88762;88763;88764;88765;88766;88767;88768;88769;88770;88771;88772;88773;88774;88775;88776;88777 90378;90379;90380;90381;90382;90383;90384;90385;90386;90387;90388;90389;90390;90391;90392;90393;90394;90395;90396;90397;90398;90399;90400;90401;90402;90403;90404;90405;90406;90407;90408;90409;90410;90411;90412;90413;90414;90415;90416;90417;90418;90419 90382 1290 42 KDLYEPTHGGK IVGRDPAGMPHPETKKDLYEPTHGGKVLSM PETKKDLYEPTHGGKVLSMAPGLTSVEIIP K K D G K V 0 0 0 1 0 0 1 2 1 0 1 2 0 0 1 0 1 0 1 0 0 0 11 1 1243.6197 O95340 O95340 524 534 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 0.063152 10.61 By MS/MS 1 0.91325 0.86386 NaN 1 Median NaN NaN NaN 0 0 Median 0.91325 0.86386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 495990 261050 234940 0 0 0 495990 261050 234940 0 0 0 0 0 0 0 0 0 0 0 0 17063 1765 17796 88778 90420 90420 1 KDNDFIYHDR KDFSDKINRALAAAKKDNDFIYHDRVPDLK LAAAKKDNDFIYHDRVPDLKDLDPIGKATL K K D D R V 0 1 1 3 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 0 10 1 1321.6051 Q8WUM4 Q8WUM4 313 322 PDCD6IP Programmed cell death 6-interacting protein yes yes 2;3 0.0013038 52.79 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.0962 1.0944 28.947 7 Median 0.91114 0.9364 38.214 2 0 Median 1.0962 1.0944 13.548 3 1 Median 1.4259 1.6275 NaN 1 0 Median 0.79422 0.76326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11600000 5128900 6471200 3753000 1793600 1959400 6521000 2828400 3692600 941780 360400 581370 384250 146420 237830 0 0 0 0 0 0 17064 3493 17797 88779;88780;88781;88782;88783;88784;88785 90421;90422;90423;90424;90425;90426;90427;90428 90426 7 KDNIFIDPGYQTFEQELNK YLCLGIQEYLCGSNRKDNIFIDPGYQTFEQ FIDPGYQTFEQELNKILRSWQPSILPDGSI R K D N K I 0 0 2 2 0 2 2 1 0 2 1 2 0 2 1 0 1 0 1 0 0 0 19 1 2298.1168 Q9UBW7 Q9UBW7 1159 1177 ZMYM2 Zinc finger MYM-type protein 2 yes yes 3 0.048596 18.538 By MS/MS 1 0.97254 1.1127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97254 1.1127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1908400 1013200 895170 0 0 0 0 0 0 1908400 1013200 895170 0 0 0 0 0 0 0 0 0 17065 4252 17798 88786 90429 90429 1 KDPELWGSVLLESNPYR ENSLFKSLSRYLVRRKDPELWGSVLLESNP PELWGSVLLESNPYRRPLIDQVVQTALSET R K D Y R R 0 1 1 1 0 0 2 1 0 0 3 1 0 0 2 2 0 1 1 1 0 0 17 1 2002.016 A0A087WVQ6;Q00610 A0A087WVQ6 955 971 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 1.2973E-06 83.966 By MS/MS By MS/MS By MS/MS 2 3 2 0.90281 0.92488 38.982 7 Median 0.92795 0.94578 2.4873 2 0 Median 0.97146 0.92488 62.656 3 0 Median 0.62188 0.72349 14.656 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15852000 8045900 7806300 9951600 4904400 5047200 3316600 1769300 1547300 2584000 1372200 1211800 0 0 0 0 0 0 0 0 0 17066 44 17799 88787;88788;88789;88790;88791;88792;88793 90430;90431;90432;90433;90434;90435;90436 90433 7 KDPGVPNSAPFKEALLR KLRKEAKKRGHKKPRKDPGVPNSAPFKEAL PGVPNSAPFKEALLREAELRKQRLEELKQQ R K D L R E 2 1 1 1 0 0 1 1 0 0 2 2 0 1 3 1 0 0 0 1 0 0 17 2 1838.005 Q9BVP2;C9JYH9;C9JZT7;B4DMU5 Q9BVP2 46 62 GNL3 Guanine nucleotide-binding protein-like 3 yes no 3 7.9944E-05 65.716 By MS/MS 1 0.46388 0.53064 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46388 0.53064 NaN 1 1 Median NaN NaN NaN 0 0 Median 5227700 3246400 1981300 0 0 0 0 0 0 0 0 0 0 0 0 5227700 3246400 1981300 0 0 0 17067 3858 17800 88794 90437 90437 1 KDPQGLGLHFYK FYEGVVELSLTAAEKKDPQGLGLHFYKHGE AEKKDPQGLGLHFYKHGEPEEDIVGLQAFQ K K D Y K H 0 0 0 1 0 1 0 2 1 0 2 2 0 1 1 0 0 0 1 0 0 0 12 1 1401.7405 O75694;E9PF10 O75694 940 951 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 5.8161E-05 95.775 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1665 1.1711 18.43 6 Median 0.8779 0.92585 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2007 1.3935 20.276 2 0 Median 1.1665 1.1112 3.1182 2 2 Median NaN NaN NaN 0 0 Median 1.4183 1.2819 NaN 1 0 Median 49163000 22481000 26682000 3422500 1587700 1834900 0 0 0 33940000 15569000 18371000 10439000 4720700 5718000 0 0 0 1362300 603980 758340 17068 1692 17801 88795;88796;88797;88798;88799;88800 90438;90439;90440;90441;90442;90443 90441 6 KDQEALEAVK KNKQAEVKKMDSGYRKDQEALEAVKRLKEK DSGYRKDQEALEAVKRLKEKLEAEMKKLNY R K D V K R 2 0 0 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 10 1 1129.5979 O95347 O95347 446 455 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0010937 85.807 By MS/MS 1 1.739 1.6177 NaN 1 Median NaN NaN NaN 0 0 Median 1.739 1.6177 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5709700 2044200 3665500 0 0 0 5709700 2044200 3665500 0 0 0 0 0 0 0 0 0 0 0 0 17069 1766 17802 88801 90444 90444 1 KDQEALEAVKR KNKQAEVKKMDSGYRKDQEALEAVKRLKEK SGYRKDQEALEAVKRLKEKLEAEMKKLNYE R K D K R L 2 1 0 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 11 2 1285.699 O95347 O95347 446 456 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 5.2257E-05 81.676 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.9302 1.0587 21.29 6 Median 1.0671 1.2129 9.0858 2 0 Median 0.98406 0.97491 29.138 2 0 Median 0.6891 0.78521 NaN 1 0 Median 0.86466 0.98543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8347400 3975100 4372300 1544300 714500 829760 5447700 2421400 3026300 849480 510140 339340 505900 328980 176920 0 0 0 0 0 0 17070 1766 17803 88802;88803;88804;88805;88806;88807 90445;90446;90447;90448;90449;90450 90448 6 KDQEMQLIHEISNLK KNDLDEFEALERKTKKDQEMQLIHEISNLK KDQEMQLIHEISNLKNLVKHAEVYNQDLEN K K D L K N 0 0 1 1 0 2 2 0 1 2 2 2 1 0 0 1 0 0 0 0 0 0 15 1 1824.9404 Q02224;A0A087X0P0;D6RBW0 Q02224 546 560 CENPE Centromere-associated protein E;Kinesin-like protein yes no 3 0.064276 7.9138 By MS/MS By matching By matching By matching By matching By matching 1 3 2 1 1 2 1.1835 1.206 20.674 10 Median 0.97873 0.94461 NaN 1 0 Median 1.1794 1.1304 12.082 3 0 Median 1.1075 1.1838 12.609 2 0 Median 1.3114 1.2456 NaN 1 0 Median 1.0947 1.1677 NaN 1 0 Median 1.9335 1.7005 21.193 2 0 Median 91387000 42321000 49066000 11290000 5645400 5644800 53512000 24933000 28579000 11270000 5211700 6058500 8780900 3805500 4975400 4454400 2079000 2375400 2079400 646650 1432800 17071 107 17804 88808;88809;88810;88811;88812;88813;88814;88815;88816;88817 90451 90451 1 KDSAIQQQVANLQMK NIEGEWGAFNDIMRRKDSAIQQQVANLQMK KDSAIQQQVANLQMKIVQEDRAVESRTTDL R K D M K I 2 0 1 1 0 4 0 0 0 1 1 2 1 0 0 1 0 0 0 1 0 0 15 1 1700.888 Q14204 Q14204 1228 1242 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 7.1412E-05 68.044 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.81089 0.84262 13.194 4 Median 0.70473 0.76793 NaN 1 0 Median 0.86609 0.82441 NaN 1 0 Median 0.7592 0.86124 NaN 1 0 Median 1.0288 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22348000 11532000 10816000 8904800 4859300 4045500 3719400 1852300 1867200 8073700 4135500 3938300 1649900 685200 964710 0 0 0 0 0 0 17072 2865 17805 88818;88819;88820;88821 90452;90453;90454 90453 3 KDSETGENIR KLKEEISKMRELLARKDSETGENIRQAASS ELLARKDSETGENIRQAASSLQQASLKLFE R K D I R Q 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 1 1 0 0 0 0 0 10 1 1147.5469 P38646 P38646 625 634 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00051514 87.308 By MS/MS By matching 1 1 1.3399 1.23 1.1264 2 Median NaN NaN NaN 0 0 Median 1.3278 1.2202 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3522 1.2398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1833700 742810 1090900 0 0 0 1751300 710880 1040400 0 0 0 82406 31931 50475 0 0 0 0 0 0 17073 2277 17806 88822;88823 90455;90456;90457;90458;90459;90460;90461 90460 7 KDSLSVNEFK TVVTTFFTFARQEGRKDSLSVNEFKELVTQ RQEGRKDSLSVNEFKELVTQQLPHLLKDVG R K D F K E 0 0 1 1 0 0 1 0 0 0 1 2 0 1 0 2 0 0 0 1 0 0 10 1 1165.5979 Q99584 Q99584 30 39 S100A13 Protein S100-A13 yes yes 2 0.030827 36.671 By MS/MS By matching 1 1 0.24515 0.23102 118.6 2 Median NaN NaN NaN 0 0 Median 0.1152 0.099871 NaN 1 0 Median 0.52165 0.53439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34960000 30690000 4270000 0 0 0 33142000 29641000 3500700 1818300 1048900 769370 0 0 0 0 0 0 0 0 0 17074 3755 17807 88824;88825 90462 90462 1 KDSVFTSMFHSVR QFLTLFFLAPELHPKKDSVFTSMFHSVRRV PKKDSVFTSMFHSVRRVLADPEIPVQVTQD K K D V R R 0 1 0 1 0 0 0 0 1 0 0 1 1 2 0 3 1 0 0 2 0 0 13 1 1539.7504 Q14146 Q14146 1195 1207 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes yes 3 0.00056256 48.14 By MS/MS By matching 1 1 1.2169 1.2746 29.017 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.377 1.5649 NaN 1 0 Median 1.0754 1.0382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2868500 1371700 1496800 0 0 0 0 0 0 2738600 1289100 1449500 129920 82554 47362 0 0 0 0 0 0 17075 2857 17808 88826;88827 90463 90463 1 KDSVWGSGGGQQSVNHLVK DKATVLLSMSKGGKRKDSVWGSGGGQQSVN WGSGGGQQSVNHLVKEIDMLLKEYLLSGDI R K D V K E 0 0 1 1 0 2 0 4 1 0 1 2 0 0 0 3 0 1 0 3 0 0 19 1 1981.997 Q53EL6 Q53EL6 311 329 PDCD4 Programmed cell death protein 4 yes yes 3 0.011032 20.251 By MS/MS 1 1.006 0.9666 NaN 1 Median 1.006 0.9666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4451500 1596500 2855000 4451500 1596500 2855000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17076 3026 17809 88828 90464 90464 1 KDTDFKLNELR KDNPQTHYYAVAVVKKDTDFKLNELRGKKS AVVKKDTDFKLNELRGKKSCHTGLGRSAGW K K D L R G 0 1 1 2 0 0 1 0 0 0 2 2 0 1 0 0 1 0 0 0 0 0 11 2 1377.7252 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 121 131 yes no 3 0.00043501 115.33 By MS/MS 1 0.088845 0.097856 NaN 1 Median 0.088845 0.097856 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5592900 5171000 421880 5592900 5171000 421880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 17077 769 17810 88829 90465 90465 1 KDTELLALQTK GLQAEIGQVKQELSRKDTELLALQTKLETL ELSRKDTELLALQTKLETLTNQFSDSKQHI R K D T K L 1 0 0 1 0 1 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 11 1 1258.7133 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 478 488 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2;3 0.00015276 65.563 By matching By MS/MS 1 2 1.1748 1.1191 12.041 3 Median NaN NaN NaN 0 0 Median 1.0736 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2638 1.2038 10.323 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3187100 1396400 1790600 0 0 0 352820 177900 174920 0 0 0 2834200 1218500 1615700 0 0 0 0 0 0 17078 3311 17811 88830;88831;88832 90466;90467 90466 2 KDTSNHFHVFVGDLSPEITTEDIK KEVKVNWATTPSSQKKDTSNHFHVFVGDLS FVGDLSPEITTEDIKSAFAPFGKISDARVV K K D I K S 0 0 1 3 0 0 2 1 2 2 1 2 0 2 1 2 3 0 0 2 0 0 24 1 2728.3344 Q01085;E7ETJ9;E7ETC0;A6NKZ9;C9JTN7;H7BY49 Q01085 91 114 TIAL1;TIA1 Nucleolysin TIAR no no 4 6.4005E-05 30.024 By MS/MS 1 1.1121 1.2118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1121 1.2118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4708200 2621300 2086900 0 0 0 0 0 0 4708200 2621300 2086900 0 0 0 0 0 0 0 0 0 17079 2682;724 17812 88833 90468 90468 1 KDVDEAHYAYSFK QERAKLNITPTKKGRKDVDEAHYAYSFKYL GRKDVDEAHYAYSFKYLKNKPVKELRDDQF R K D F K Y 2 0 0 2 0 0 1 0 1 0 0 2 0 1 0 1 0 0 2 1 0 0 13 1 1571.7256 Q7KZ85 Q7KZ85 626 638 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.054395 11.915 By MS/MS By MS/MS 1 1 2.3598 2.4505 19.253 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8538 2.1386 NaN 1 0 Median 3.0038 2.8079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5539600 1506300 4033300 0 0 0 0 0 0 4357800 1132700 3225100 1181800 373510 808280 0 0 0 0 0 0 17080 3213 17813 88834;88835 90469;90470 90470 2 KDVDEAYMNK INKRTEMENEFVLIKKDVDEAYMNKVELES FVLIKKDVDEAYMNKVELESRLEGLTDEIN K K D N K V 1 0 1 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1211.5492 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552 P05787 198 207 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.0086646 49.536 By matching By MS/MS By MS/MS 1 1 1 1.2053 1.1338 11.369 3 Plateau 1.0154 0.98712 NaN 1 0 Median 1.2053 1.1338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1591 1.2367 NaN 1 0 Median NaN NaN NaN 0 0 Median 4859000 2187700 2671300 773230 309560 463670 2340500 1008700 1331800 0 0 0 0 0 0 1745200 869430 875790 0 0 0 + 17081 750;792 17814 88836;88837;88838 90471;90472 90471 2 KDVDEAYMNKVELESR INKRTEMENEFVLIKKDVDEAYMNKVELES DVDEAYMNKVELESRLEGLTDEINFLRQLY K K D S R L 1 1 1 2 0 0 3 0 0 0 1 2 1 0 0 1 0 0 1 2 0 0 16 2 1924.92 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 198 213 KRT8 Keratin, type II cytoskeletal 8 yes no 3 7.2973E-08 97.081 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99765 1.1833 38.577 4 Median 0.6463 0.63174 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86769 1.067 NaN 1 0 Median 1.4005 1.529 NaN 1 0 Median 1.1471 1.3122 NaN 1 0 Median NaN NaN NaN 0 0 Median 49255000 22747000 26508000 2771400 1288500 1482900 0 0 0 10056000 5045100 5010700 15463000 6804400 8658900 20964000 9608600 11356000 0 0 0 + 17082 750 17815 88839;88840;88841;88842 90473;90474;90475 90475 3 KDVDGAYMTK INKRTNAENEFVTIKKDVDGAYMTKVDLQA FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K K D T K V 1 0 0 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 1 1 0 0 10 1 1126.5329 P04264;CON__P04264 P04264 289 298 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.00057864 93.258 By MS/MS By MS/MS By MS/MS 3 1 1 0.28752 0.27099 79.108 5 Median NaN NaN NaN 0 0 Median 0.2391 0.22377 11.694 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64135 0.69089 NaN 1 1 Median 1.4374 1.2827 NaN 1 1 Median 13685000 8595500 5089300 0 0 0 3437400 2716500 720880 0 0 0 0 0 0 8719600 5177100 3542500 1527700 701790 825920 + 17083 1848 17816 88843;88844;88845;88846;88847 90476;90477;90478;90479;90480 90477 5 KDVDNAYMIK INKRTAAENDFVTLKKDVDNAYMIKVELQS FVTLKKDVDNAYMIKVELQSKVDLLNQEIE K K D I K V 1 0 1 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1195.5907 CON__P35908;CON__P35908v2;P35908 CON__P35908 293 302 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.9016E-07 131.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 7 1 2 0.28723 0.25742 98.24 12 Median 0.62926 0.60165 NaN 1 1 Median 0.13308 0.12684 155.91 3 3 Median NaN NaN NaN 0 0 Median 0.27747 0.25482 92.144 6 6 Median 0.42674 0.46147 NaN 1 1 Median 0.28925 0.25812 NaN 1 1 Median 46673000 35471000 11201000 5632900 5309400 323510 8966100 6963900 2002200 0 0 0 12224000 10009000 2215000 13767000 7514100 6253200 6082700 5675400 407350 + 17084 764;765 17817 88848;88849;88850;88851;88852;88853;88854;88855;88856;88857;88858;88859;88860;88861;88862 90481;90482;90483;90484;90485;90486;90487;90488;90489;90490;90491;90492;90493;90494;90495 90484 15 KDVDVYSQILR KSEMVPSCPFIYIIRKDVDVYSQILRKLFN YIIRKDVDVYSQILRKLFNESHGIFLGLQR R K D L R K 0 1 0 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 2 0 0 11 1 1334.7194 Q9BW27;J3KT10;J3KSH3;J3KRC0 Q9BW27 59 69 NUP85 Nuclear pore complex protein Nup85 yes no 2;3 3.9005E-05 87.298 By MS/MS By MS/MS 2 1 1.1342 1.2043 13.158 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0907 1.1578 5.5655 2 1 Median 1.5695 1.4391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13841000 6848500 6992900 0 0 0 0 0 0 13183000 6617600 6565200 658570 230880 427690 0 0 0 0 0 0 17085 3861 17818 88863;88864;88865 90496;90497;90498 90496 3 KDVFFYQADDEHYIPR PEGIVEEFATEGTDRKDVFFYQADDEHYIP DVFFYQADDEHYIPRAVLLDLEPRVIHSIL R K D P R A 1 1 0 3 0 1 1 0 1 1 0 1 0 2 1 0 0 0 2 1 0 0 16 1 2041.9534 P23258;Q9NRH3;K7EIS0;K7EKE5 P23258 48 63 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 3 0.062367 15.238 By MS/MS 1 0.97306 0.93451 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97306 0.93451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2977500 1516300 1461100 0 0 0 0 0 0 0 0 0 2977500 1516300 1461100 0 0 0 0 0 0 17086 2108 17819 88866 90499 90499 0 KDVLETFTVK LAGGVEQFISDICPKKDVLETFTVKSCPDA DICPKKDVLETFTVKSCPDAIKEVFDNKFH K K D V K S 0 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 2 0 0 2 0 0 10 1 1178.6547 A6NNI4;A0A2R8Y478;G8JLH6;P21926 A6NNI4 101 110 CD9 Tetraspanin;CD9 antigen yes no 2 0.00054398 118.4 By MS/MS By MS/MS By matching 1 2 1 1.0182 0.96737 15.325 4 Median 0.86647 0.86079 NaN 1 0 Median 1.2206 1.1212 9.9437 2 0 Median 0.87738 0.89547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58618000 31420000 27198000 41303000 23229000 18074000 14025000 6395800 7629300 3289700 1794500 1495200 0 0 0 0 0 0 0 0 0 17087 360 17820 88867;88868;88869;88870 90500;90501;90502;90503;90504 90503 4 KDVSGPMPDSYSPR PGVITYDLPTPPGEKKDVSGPMPDSYSPRY KKDVSGPMPDSYSPRYVEAAWYPWWEQQGF K K D P R Y 0 1 0 2 0 0 0 1 0 0 0 1 1 0 3 3 0 0 1 1 0 0 14 1 1534.7086 P26640;A0A140T936;A0A140T954 P26640 290 303 VARS Valine--tRNA ligase yes no 3 0.0035151 30.961 By MS/MS 1 0.71529 0.6874 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71529 0.6874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1223200 605360 617860 0 0 0 0 0 0 0 0 0 1223200 605360 617860 0 0 0 0 0 0 17088 2148 17821 88871 90505 90505 1 KDVYVQLYLQHLTAR ELVANNVTLPAGEQRKDVYVQLYLQHLTAR KDVYVQLYLQHLTARNRPPLPAGTNSKGPP R K D A R N 1 1 0 1 0 2 0 0 1 0 3 1 0 0 0 0 1 0 2 2 0 0 15 1 1846.0101 P42166;P42167;G5E972 P42166 34 48 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3 9.5288E-05 49.993 By MS/MS 2 0.95935 1.0461 17.297 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95935 1.0461 17.297 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10992000 5958800 5033600 0 0 0 0 0 0 10992000 5958800 5033600 0 0 0 0 0 0 0 0 0 17089 2306;2307 17822 88872;88873 90506;90507;90508 90508 3 KDWDDDQND IMAKPAGGPKPPSGKKDWDDDQND______ KPPSGKKDWDDDQND_______________ K K D N D - 0 0 1 5 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 9 1 1149.4211 P50990;H7C2U0 P50990 540 548 CCT8 T-complex protein 1 subunit theta yes no 2 0.0046301 66.351 By MS/MS By MS/MS By matching 2 2 1 1.2457 1.0167 16.919 5 Linear 1.1031 1.0542 0.76873 2 0 Median 1.0006 0.85624 24.297 2 0 Median 0.82899 0.83995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23959000 11091000 12868000 9800600 4441200 5359400 13047000 6067200 6980000 1111300 582960 528300 0 0 0 0 0 0 0 0 0 17090 2423 17823 88874;88875;88876;88877;88878 90509;90510;90511;90512 90509 4 KDWLFAPHYR SVFFQSLAVVEQEMKKDWLFAPHYRYYVRE EQEMKKDWLFAPHYRYYVREMRIHAYSQLL K K D Y R Y 1 1 0 1 0 0 0 0 1 0 1 1 0 1 1 0 0 1 1 0 0 0 10 1 1331.6775 Q15008 Q15008 284 293 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 3 0.00025914 68.657 By MS/MS By matching By matching 1 1 1 1.1668 1.1078 36.031 3 Median 1.0339 1.1078 NaN 1 0 Median 1.1668 1.0892 NaN 1 0 Median 1.7992 2.0499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10740000 5208200 5531900 8326800 4302800 4024000 413060 188240 224820 2000300 717160 1283100 0 0 0 0 0 0 0 0 0 17091 2911 17824 88879;88880;88881 90513;90514 90514 2 KDWYDVK GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV K K D V K A 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 7 1 952.46543 P61247;E9PFI5;D6RG13;H0Y9Y4;H0Y8L7;D6RI02 P61247 28 34 RPS3A 40S ribosomal protein S3a yes no 2 0.0085311 94.806 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0713 0.95235 26.802 4 Median 0.94899 0.92191 NaN 1 0 Median 1.0355 0.93195 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1083 0.97319 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8952 1.607 NaN 1 0 Median 57792000 26591000 31201000 13611000 6841300 6770200 27634000 13356000 14277000 0 0 0 8792800 3599400 5193400 0 0 0 7754400 2793900 4960500 17092 2553 17825 88882;88883;88884;88885 90515;90516;90517;90518;90519;90520 90516 6 KEAAENSLVAYK DYHRYLAEFATGNDRKEAAENSLVAYKAAS NDRKEAAENSLVAYKAASDIAMTELPPTHP R K E Y K A 3 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 1 1 0 0 12 1 1321.6878 P62258;K7EM20 P62258 142 153 YWHAE 14-3-3 protein epsilon yes no 2;3 0.0001502 142.1 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 0.94383 0.85025 11.617 7 Median 0.90312 0.87836 6.1876 2 1 Median 0.94383 0.85025 18.259 3 2 Median 0.82714 0.86905 NaN 1 0 Median 0.95183 0.83578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36430000 20090000 16341000 21456000 12754000 8702200 10845000 5239300 5605800 1668200 966060 702140 2460700 1130000 1330700 0 0 0 0 0 0 17093 2576 17826 88886;88887;88888;88889;88890;88891;88892 90521;90522;90523;90524;90525;90526 90526 6 KEAAWAITNATSGGSAEQIK PALISILQTAEFRTRKEAAWAITNATSGGS AITNATSGGSAEQIKYLVELGCIKPLCDLL R K E I K Y 5 0 1 0 0 1 2 2 0 2 0 2 0 0 0 2 2 1 0 0 0 0 20 1 2032.0225 P52294 P52294 398 417 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 3 4.1954E-09 79.293 By MS/MS 1 0.90059 0.94189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90059 0.94189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7085900 3861300 3224700 0 0 0 0 0 0 7085900 3861300 3224700 0 0 0 0 0 0 0 0 0 17094 2449 17827 88893 90527;90528 90528 2 KEAESSPFVER KEKQDKIYFMAGSSRKEAESSPFVERLLKK GSSRKEAESSPFVERLLKKGYEVIYLTEPV R K E E R L 1 1 0 0 0 0 3 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 11 1 1277.6252 P14625 P14625 547 557 HSP90B1 Endoplasmin yes yes 2;3 0.00019142 146.11 By MS/MS By MS/MS 3 3 0.89784 0.93414 21.49 5 Median 0.8285 0.84576 10.246 3 0 Median 1.1862 1.1789 17.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25249000 11769000 13480000 10218000 5574400 4644000 15030000 6194400 8835800 0 0 0 0 0 0 0 0 0 0 0 0 17095 2006 17828 88894;88895;88896;88897;88898;88899 90529;90530;90531;90532;90533;90534;90535;90536;90537 90536 9 KEALESVEVLIKNPK KDFYDKIEAKKWQERKEALESVEVLIKNPK KEALESVEVLIKNPKLEAGDYADLVKALKK R K E P K L 1 0 1 0 0 0 3 0 0 1 2 3 0 0 1 1 0 0 0 2 0 0 15 2 1695.9771 Q14008 Q14008 297 311 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.02663 33.265 By MS/MS 3 1.1072 1.2671 24.063 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1072 1.2671 24.063 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10657000 4470500 6186800 0 0 0 0 0 0 10657000 4470500 6186800 0 0 0 0 0 0 0 0 0 17096 2850 17829 88900;88901;88902 90538 90538 0 KEAPPMEKPEVVK RRKQHSLLKRLRKAKKEAPPMEKPEVVKTH AKKEAPPMEKPEVVKTHLRDMIILPEMVGS K K E V K T 1 0 0 0 0 0 3 0 0 0 0 3 1 0 3 0 0 0 0 2 0 0 13 2 1480.796 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841;K7EQJ5;S4R456;K7EJ78 K7EM56 32 44 RPS15 40S ribosomal protein S15 yes no 3 0.0012366 43.03 By matching By MS/MS By matching 1 1 1 0.73079 0.75186 14.774 3 Median 0.69427 0.75186 NaN 1 0 Median 0.73079 0.65943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7836 0.8856 NaN 1 0 Median NaN NaN NaN 0 0 Median 6049700 3518800 2530900 2088800 1242900 845970 3782400 2177400 1605000 0 0 0 0 0 0 178480 98579 79903 0 0 0 17097 221 17830 88903;88904;88905 90539 90539 1 KEDALLYQSK LNSTRGDADMYDLPKKEDALLYQSKGYNDD YDLPKKEDALLYQSKGYNDDYYEESYFTTR K K E S K G 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1193.6292 P50402;Q5HY57 P50402 79 88 EMD Emerin yes no 2 0.00051232 82.831 By MS/MS By MS/MS By MS/MS 1 1 2 1.1874 1.0626 19.888 4 Median NaN NaN NaN 0 0 Median 1.2844 1.1573 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2273 1.2928 NaN 1 0 Median 1.0424 0.89495 12.209 2 0 Median 12234000 5329400 6904900 0 0 0 2468300 1074800 1393500 0 0 0 0 0 0 4573800 1974600 2599200 5192300 2280100 2912200 17098 2412 17831 88906;88907;88908;88909 90540;90541;90542;90543 90543 4 KEDEVEEWQHR EYTAKIALLEEARRRKEDEVEEWQHRAKEA ARRRKEDEVEEWQHRAKEAQDDLVKTKEEL R K E H R A 0 1 0 1 0 1 4 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 11 1 1483.6692 P15311;E7EQR4 P15311 438 448 EZR Ezrin yes no 2;3 0.00087001 61.65 By matching By MS/MS 1 2 1.1364 1.0636 16.43 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1862 1.3528 NaN 1 0 Median 1.0869 1.0252 5.2088 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11710000 5549900 6160300 0 0 0 0 0 0 4081700 2207700 1874000 7628500 3342200 4286300 0 0 0 0 0 0 17099 879 17832 88910;88911;88912 90544;90545;90546;90547 90545 4 KEDGTFYEFGEDIPEAPER NYSDAIVWLKEHDVKKEDGTFYEFGEDIPE TFYEFGEDIPEAPERLMTDTINEPILLCRF K K E E R L 1 1 0 2 0 0 5 2 0 1 0 1 0 2 2 0 1 0 1 0 0 0 19 1 2227.991 O43776 O43776 407 425 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 3 2.2605E-10 93.371 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.81331 0.82494 17.547 5 Median 0.73425 0.73614 NaN 1 0 Median 0.71864 0.65689 NaN 1 0 Median 0.81331 0.91528 NaN 1 0 Median 0.99183 0.92 15.423 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46859000 25056000 21803000 14705000 8000800 6703800 5797600 3118300 2679300 23330000 12426000 10903000 3027400 1511100 1516200 0 0 0 0 0 0 17100 1589 17833 88913;88914;88915;88916;88917 90548;90549;90550;90551;90552 90550 5 KEDINLSVR TVHVEVHQRGSSTAKKEDINLSVRKLLNRH GSSTAKKEDINLSVRKLLNRHNIVFGDYTW K K E V R K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 Q15645;H0YAL2 Q15645 35 43 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.0030558 73.985 By MS/MS By MS/MS 1 1 1.2462 1.1896 0.59428 2 Median 1.1865 1.1846 NaN 1 0 Median 1.309 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13345000 5832500 7512800 5408500 2524200 2884300 7936800 3308300 4628500 0 0 0 0 0 0 0 0 0 0 0 0 17101 2960 17834 88918;88919 90553;90554 90553 2 KEDLFGRPSQGLYSSSASSGK IPLADQPHLLQPNARKEDLFGRPSQGLYSS RPSQGLYSSSASSGKCLMEVTVDRNCLEVL R K E G K C 1 1 0 1 0 1 1 3 0 0 2 2 0 1 1 6 0 0 1 0 0 0 21 2 2200.076 O95071;E7EMW7 O95071 2063 2083 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 4 1.9529E-06 40.756 By MS/MS 1 0.7934 0.86341 NaN 1 Median 0.7934 0.86341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6496300 3624800 2871500 6496300 3624800 2871500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17102 1744 17835 88920 90555 90555 1 KEDLLVDLK EIERMEKQILSLNQRKEDLLVDLKATVLNL LSLNQRKEDLLVDLKATVLNLHQHLKQEQE R K E L K A 0 0 0 2 0 0 1 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 9 1 1071.6176 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4053 4061 SYNE2 Nesprin-2 yes no 2 0.0011596 96.342 By matching By MS/MS By matching 1 1 1 0.72265 0.81952 131.26 3 Median NaN NaN NaN 0 0 Median 1.042 0.99199 NaN 1 0 Median 0.72265 0.81952 NaN 1 0 Median 0.091918 0.093383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16493000 9357300 7135800 0 0 0 3874600 1694600 2180000 9475900 4793700 4682100 3142600 2868900 273680 0 0 0 0 0 0 17103 3521 17836 88921;88922;88923 90556 90556 1 KEDLYLKPIQR GLKVRIMGPNYTPGKKEDLYLKPIQRTILM TPGKKEDLYLKPIQRTILMMGRYVEPIEDV K K E Q R T 0 1 0 1 0 1 1 0 0 1 2 2 0 0 1 0 0 0 1 0 0 0 11 2 1401.798 P13639 P13639 439 449 EEF2 Elongation factor 2 yes yes 2;3 1.1874E-51 230.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 6 6 4 7 2 1 0.86977 0.91872 26.479 24 Median 0.946 1.0753 8.0136 5 0 Median 0.7894 0.7947 9.3411 6 0 Median 1.0895 1.3099 40.081 4 0 Median 0.81439 0.88989 12.772 6 0 Median 1.3736 1.6165 16.936 2 0 Median 0.87538 0.8981 NaN 1 0 Median 318650000 161550000 157090000 104350000 51226000 53119000 105070000 55558000 49516000 44291000 21428000 22863000 57957000 30754000 27203000 5254900 1653500 3601500 1725100 934780 790300 17104 1992 17837 88924;88925;88926;88927;88928;88929;88930;88931;88932;88933;88934;88935;88936;88937;88938;88939;88940;88941;88942;88943;88944;88945;88946;88947;88948;88949 90557;90558;90559;90560;90561;90562;90563;90564;90565;90566;90567;90568;90569;90570;90571;90572;90573;90574;90575;90576;90577;90578;90579;90580;90581;90582;90583;90584 90559 28 KEDMEYALR ADVQKDGVGMVEYLRKEDMEYALRKLDDTK MVEYLRKEDMEYALRKLDDTKFRSHEGETS R K E L R K 1 1 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 9 1 1153.5438 Q13242;H0YIB4 Q13242 155 163 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00083182 111.95 By MS/MS By MS/MS By matching By MS/MS 1 1 1 3 1.2384 1.1302 14.806 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1269 1.1731 NaN 1 0 Median 1.0162 0.89955 NaN 1 0 Median 0.93342 1.0461 NaN 1 0 Median 1.3813 1.2153 12.321 3 0 Median 20833000 9484600 11349000 0 0 0 0 0 0 7679100 4006800 3672300 1551900 700200 851730 423500 162130 261370 11179000 4615500 6563300 17105 2799 17838 88950;88951;88952;88953;88954;88955 90585;90586;90587;90588;90589;90590;90591 90590 7 KEDMFKDNFDEMDTSR YDKLRKREAFLEQFRKEDMFKDNFDEMDTS EDMFKDNFDEMDTSREIVQQLIDEYHAATR R K E S R E 0 1 1 4 0 0 2 0 0 0 0 2 2 2 0 1 1 0 0 0 0 0 16 2 2006.835 P23258 P23258 410 425 TUBG1 Tubulin gamma-1 chain yes yes 3 0.035057 28.869 By matching By MS/MS 1 1 1.1938 1.3186 37.447 2 Median 0.9055 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5739 1.7183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8449600 3329000 5120600 1133400 689320 444030 0 0 0 0 0 0 7316200 2639600 4676600 0 0 0 0 0 0 17106 2108 17839 88956;88957 90592 90592 0 KEDMTYAVR ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK VVEFVRKEDMTYAVRKLDNTKFRSHEGETA R K E V R K 1 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 1 1111.5332 J3KTL2;Q07955;J3KSR8 J3KTL2 165 173 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00083182 111.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1.091 1.1281 7.6084 9 Median 1.091 1.0838 NaN 1 0 Median 1.4225 1.2784 NaN 1 0 Median 1.0133 1.0683 12.71 2 0 Median 1.1967 1.1293 NaN 1 0 Median 1.0282 1.1052 7.9023 2 0 Median 1.2563 1.112 2.0436 2 0 Median 73658000 34335000 39323000 2981900 1291700 1690200 4679300 1823500 2855800 9386600 4280100 5106500 9327600 4310300 5017300 34547000 17089000 17458000 12736000 5540800 7194700 17107 1337 17840 88958;88959;88960;88961;88962;88963;88964;88965;88966 90593;90594;90595;90596;90597;90598;90599;90600;90601;90602;90603;90604;90605 90598 13 KEEAYELVR ETLAMKGLTLNCLGKKEEAYELVRRGLRND LNCLGKKEEAYELVRRGLRNDLKSHVCWHV K K E V R R 1 1 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 9 1 1135.5873 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 62 70 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.061477 41.029 By MS/MS 1 0.77803 0.73996 NaN 1 Median NaN NaN NaN 0 0 Median 0.77803 0.73996 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1555500 867460 688040 0 0 0 1555500 867460 688040 0 0 0 0 0 0 0 0 0 0 0 0 17108 213 17841 88967 90606 90606 1 KEEDSDFISGR SIFEQDSKRLQHLERKEEDSDFISGRIYGK HLERKEEDSDFISGRIYGKQTSEGANSTTD R K E G R I 0 1 0 2 0 0 2 1 0 1 0 1 0 1 0 2 0 0 0 0 0 0 11 1 1281.5837 Q96T58 Q96T58 1549 1559 SPEN Msx2-interacting protein yes yes 2;3 0.0086016 43.512 By MS/MS By matching 3 1 0.98608 1.0409 38.426 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82431 0.95152 46.89 3 0 Median 1.1796 1.1388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3468600 1799100 1669600 0 0 0 0 0 0 2962200 1635300 1326900 506450 163790 342670 0 0 0 0 0 0 17109 3741 17842 88968;88969;88970;88971 90607;90608;90609 90608 3 KEEDVSYLSGQLSEK ELQPKLDELQKLISKKEEDVSYLSGQLSEK KEEDVSYLSGQLSEKEAALTKIQTEIIEQE K K E E K E 0 0 0 1 0 1 3 1 0 0 2 2 0 0 0 3 0 0 1 1 0 0 15 1 1710.8312 Q14789;E7EU81 Q14789 1404 1418 GOLGB1 Golgin subfamily B member 1 yes no 3 8.6339E-05 58.83 By MS/MS By matching 1 1 1.1689 1.1906 1.9093 2 Median 1.0797 1.1746 NaN 1 0 Median 1.2653 1.2067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12796000 5189200 7606500 5294000 2795600 2498400 7501700 2393600 5108100 0 0 0 0 0 0 0 0 0 0 0 0 17110 2900 17843 88972;88973 90610 90610 1 KEEEAVLVGGEWSPSLDGLDPQADPQVLVR TPEHPLKQIKFLLGRKEEEAVLVGGEWSPS LDGLDPQADPQVLVRTAIRCAQAQTGIDLS R K E V R T 2 1 0 3 0 2 4 3 0 0 4 1 0 0 3 2 0 1 0 4 0 0 30 1 3232.6252 Q8N163;H0YB24;G3V119;E5RHJ4 Q8N163 353 382 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.063742 5.2656 By MS/MS 1 0.4732 0.54112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4732 0.54112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 958430 656810 301620 0 0 0 0 0 0 958430 656810 301620 0 0 0 0 0 0 0 0 0 17111 3354 17844 88974 90611 90611 1 KEEELQAALAR ELQAQIAELKMQLAKKEEELQAALARVEEE QLAKKEEELQAALARVEEEAAQKNMALKKI K K E A R V 3 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1256.6725 P35579;Q7Z406;A0A0C4DFM8 P35579 1081 1091 MYH9;MYH14 Myosin-9;Myosin-14 no no 2;3 1.1336E-09 175.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 2 4 1.0141 1.0009 20.673 18 Median 1.1795 1.1763 9.9771 3 1 Median 1.0745 0.99326 7.7974 4 0 Median 0.90382 1.0837 11.033 2 0 Median 1.2275 1.185 31.744 3 1 Plateau 0.92511 1.0526 30.766 2 1 Median 0.9873 0.87702 17.887 4 0 Median 264400000 126920000 137470000 62998000 29293000 33706000 117450000 56152000 61300000 15115000 7234700 7880700 5208500 2737000 2471500 38229000 19041000 19188000 25392000 12464000 12927000 17112 2244;3242 17845 88975;88976;88977;88978;88979;88980;88981;88982;88983;88984;88985;88986;88987;88988;88989;88990;88991;88992 90612;90613;90614;90615;90616;90617;90618;90619;90620;90621;90622;90623;90624;90625;90626;90627;90628;90629;90630;90631;90632;90633;90634;90635 90625 23 KEEELQGALAR ELQAQIDELKLQLAKKEEELQGALARGDDE QLAKKEEELQGALARGDDETLHKNNALKVV K K E A R G 2 1 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1242.6568 P35580 P35580 1088 1098 MYH10 Myosin-10 yes yes 2;3 2.2566E-05 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1.3329 1.2454 23.41 8 Median 1.0652 1.0724 15.957 2 1 Median 1.4105 1.3278 3.8571 2 0 Median 0.83342 0.99938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1505 1.894 27.459 3 1 Plateau 51038000 23870000 27169000 15890000 6861700 9028100 17234000 7713000 9521000 6225000 3632100 2592900 0 0 0 0 0 0 11689000 5662800 6026700 17113 2245 17846 88993;88994;88995;88996;88997;88998;88999;89000;89001 90636;90637;90638;90639;90640;90641;90642;90643;90644;90645;90646;90647 90640 12 KEEENASVIDSAELQAYPALVVEK DAYMTLADFCDQQLRKEEENASVIDSAELQ DSAELQAYPALVVEKMLKALKLNSNEARLK R K E E K M 4 0 1 1 0 1 5 0 0 1 2 2 0 0 1 2 0 0 1 3 0 0 24 1 2631.3279 P78527 P78527 3426 3449 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 2.5554E-35 128.51 By MS/MS By matching By MS/MS By matching 2 1 4 1 0.72887 0.81781 17.506 8 Median 0.81593 0.83896 6.2214 2 1 Median 1.0218 0.9723 NaN 1 0 Median 0.67261 0.76894 9.9079 4 1 Median 1.2673 1.1795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110190000 59760000 50428000 74034000 38553000 35481000 3259200 1647700 1611500 32470000 19381000 13090000 424740 179230 245500 0 0 0 0 0 0 17114 2647 17847 89002;89003;89004;89005;89006;89007;89008;89009 90648;90649;90650;90651;90652;90653;90654 90648 7 KEEILLIK AQLTQRSVHICHVARKEEILLIKAAKARGL HICHVARKEEILLIKAAKARGLPVTCEVAP R K E I K A 0 0 0 0 0 0 2 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 8 1 984.62193 F8VPD4;P27708 F8VPD4 1555 1562 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0050742 88.177 By matching By MS/MS By matching 1 4 1 1.1078 1.0466 20.196 6 Median 1.4095 1.3659 NaN 1 0 Median 1.0368 0.98994 19.434 4 0 Median NaN NaN NaN 0 0 Median 1.1641 1.0842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24627000 10908000 13719000 9594300 3793400 5800900 14465000 6796800 7668200 0 0 0 567630 317860 249770 0 0 0 0 0 0 17115 1057 17848 89010;89011;89012;89013;89014;89015 90655;90656 90656 2 KEEITGTLR NHDEYSLVRELMEEKKEEITGTLRKDKTLL ELMEEKKEEITGTLRKDKTLLRDEKKMEKL K K E L R K 0 1 0 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 0 0 0 9 1 1045.5768 Q9Y490 Q9Y490 138 146 TLN1 Talin-1 yes yes 2 0.064138 32.32 By MS/MS 1 0.88576 0.84868 NaN 1 Median NaN NaN NaN 0 0 Median 0.88576 0.84868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1193600 572250 621300 0 0 0 1193600 572250 621300 0 0 0 0 0 0 0 0 0 0 0 0 17116 4441 17849 89016 90657 90657 1 KEEKAEPPQAMNALMR GEEKSPSKKKKKIQKKEEKAEPPQAMNALM EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K K E M R L 3 1 1 0 0 1 3 0 0 0 1 2 2 0 2 0 0 0 0 0 0 0 16 2 1841.9128 Q12906 Q12906 393 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 3.2121E-10 101.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.6708 0.79049 23.83 5 Median 0.60533 0.66672 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.80812 1.0067 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56366 0.65444 26.711 2 0 Median 0.83736 0.85909 NaN 1 0 Median 66603000 38437000 28166000 3695300 2113600 1581700 0 0 0 12302000 6556400 5745500 0 0 0 44364000 26725000 17639000 6241300 3041700 3199700 17117 2769 17850 89017;89018;89019;89020;89021 90658;90659;90660;90661;90662;90663;90664;90665 90661 8 KEELAEALKK ISILTTGMSATSRKRKEELAEALKKLILSK TSRKRKEELAEALKKLILSKGKTPALKYQQ R K E K K L 2 0 0 0 0 0 3 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 10 2 1157.6656 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 748 757 MCM4 DNA replication licensing factor MCM4 yes no 2 0.061409 38.303 By MS/MS 1 0.99555 0.94551 NaN 1 Median NaN NaN NaN 0 0 Median 0.99555 0.94551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1476800 825910 650880 0 0 0 1476800 825910 650880 0 0 0 0 0 0 0 0 0 0 0 0 17118 441 17851 89022 90666 90666 1 KEELNAISGPNEFAEFYNR SGNLRDLYDDKDGLRKEELNAISGPNEFAE NAISGPNEFAEFYNRLKQIKEFHRKHPNEI R K E N R L 2 1 3 0 0 0 4 1 0 1 1 1 0 2 1 1 0 0 1 0 0 0 19 1 2227.0546 Q12874 Q12874 69 87 SF3A3 Splicing factor 3A subunit 3 yes yes 3 1.925E-13 98.796 By MS/MS By MS/MS By MS/MS 1 2 1 0.859 0.85406 2.9476 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77923 0.87812 NaN 1 0 Median 0.92074 0.85406 3.1658 2 0 Median 0.8101 0.82977 NaN 1 0 Median NaN NaN NaN 0 0 Median 45789000 24293000 21496000 0 0 0 0 0 0 31961000 17154000 14807000 3379000 1689100 1689900 10448000 5449800 4998600 0 0 0 17119 2767 17852 89023;89024;89025;89026 90667;90668;90669;90670;90671;90672 90667 6 KEELSEEGYLAK TEIKNQLCDLETKLRKEELSEEGYLAKVKS KLRKEELSEEGYLAKVKSLLNKDLSLENGA R K E A K V 1 0 0 0 0 0 4 1 0 0 2 2 0 0 0 1 0 0 1 0 0 0 12 1 1394.6929 P26358;K7EJL0 P26358 70 81 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2;3 0.00018092 83 By MS/MS By MS/MS 2 2 0.97647 0.92646 18.759 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77083 0.88981 32.237 2 1 Median 0.98659 0.92646 0.47039 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16009000 9009900 6999200 0 0 0 0 0 0 10233000 5987400 4246000 5775600 3022400 2753200 0 0 0 0 0 0 17120 2142 17853 89027;89028;89029;89030 90673;90674;90675;90676 90673 4 KEELTLEGIR VTKKFMRDPIRILVKKEELTLEGIRQFYIN RILVKKEELTLEGIRQFYINVEREEWKLDT K K E I R Q 0 1 0 0 0 0 3 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1186.6558 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3KTN0 P60842 238 247 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 1.6684E-10 177.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1 4 1.0618 0.96747 32.526 12 Median 1.1322 1.168 8.9701 2 1 Median 1.0018 0.93303 1.6445 2 0 Median 1.2483 1.3445 5.5838 2 0 Median 1.0549 0.9626 0.81161 2 0 Median 2.7885 2.8639 NaN 1 0 Median 1.0343 0.92988 2.2769 3 0 Median 487690000 205750000 281950000 104960000 38430000 66527000 113820000 49285000 64535000 94874000 40653000 54220000 146850000 67196000 79653000 6973700 1696700 5277000 20221000 8487500 11733000 17121 2529 17854 89031;89032;89033;89034;89035;89036;89037;89038;89039;89040;89041;89042;89043;89044;89045;89046 90677;90678;90679;90680;90681;90682;90683;90684;90685;90686;90687;90688;90689;90690;90691;90692;90693;90694;90695;90696;90697;90698 90678 22 KEELVAEQALK GLLWTCIMNAVEWNKKEELVAEQALKHLKQ EWNKKEELVAEQALKHLKQYAPLLAVFSSQ K K E L K H 2 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1256.6976 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7 E7ETZ4 310 320 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2;3 0.00015651 68.657 By matching By MS/MS By matching By MS/MS 1 4 1 1 1.0179 0.92173 13.731 7 Median 0.90259 0.84483 NaN 1 0 Median 1.0303 0.93283 11.636 4 1 Median 1.0941 1.1922 NaN 1 0 Median 0.91977 0.87362 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11522000 6127000 5394600 1009100 702790 306290 7102800 3853000 3249900 918850 342520 576330 2490800 1228700 1262100 0 0 0 0 0 0 17122 892 17855 89047;89048;89049;89050;89051;89052;89053 90699;90700;90701;90702 90699 4 KEELVPSEEDFQGITPGAQGPSSR MAPVPGTTTTTTSVKKEELVPSEEDFQGIT DFQGITPGAQGPSSRGREPEARPKRELRER K K E S R G 1 1 0 1 0 2 4 3 0 1 1 1 0 1 3 3 1 0 0 1 0 0 24 1 2557.2296 O75150;H3BP71 O75150 579 602 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 3 1.7734E-20 93.404 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.73901 0.7102 15.612 5 Median 0.75477 0.78454 NaN 1 0 Median 0.70478 0.68148 NaN 1 0 Median 0.57967 0.65752 NaN 1 0 Median 0.91366 0.82993 22.033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33303000 20216000 13087000 3098200 1779100 1319100 327770 162870 164900 26747000 16521000 10226000 3130300 1753500 1376700 0 0 0 0 0 0 17123 1648 17856 89054;89055;89056;89057;89058 90703;90704;90705;90706 90704 4 KEENLADWYSQVITK GQGPKKQTRLGLEAKKEENLADWYSQVITK KEENLADWYSQVITKSEMIEYHDISGCYIL K K E T K S 1 0 1 1 0 1 2 0 0 1 1 2 0 0 0 1 1 1 1 1 0 0 15 1 1822.9101 P07814 P07814 1020 1034 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 0.00124 45.257 By MS/MS By matching By matching 3 2 2 1.1799 1.1553 18.334 7 Median 1.14 1.0807 26.535 3 0 Median 1.1882 1.1567 0.17255 2 0 Median 1.0495 1.202 23.488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54449000 26382000 28066000 48609000 23481000 25129000 3331800 1432000 1899800 2507600 1469500 1038000 0 0 0 0 0 0 0 0 0 17124 1892 17857 89059;89060;89061;89062;89063;89064;89065 90707;90708 90707 2 KEESISLMK KLLREVAGTRVYDERKEESISLMKETEGKR RVYDERKEESISLMKETEGKREKINELLKY R K E M K E 0 0 0 0 0 0 2 0 0 1 1 2 1 0 0 2 0 0 0 0 0 0 9 1 1063.5583 Q9UQE7 Q9UQE7 172 180 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0014867 96.034 By MS/MS By MS/MS 1 1 1.1149 1.1363 2.4861 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0039 1.1564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2382 1.1165 NaN 1 0 Median 10010000 4721300 5288300 0 0 0 0 0 0 7327100 3574000 3753100 0 0 0 0 0 0 2682500 1147400 1535200 17125 4362 17858 89066;89067 90709;90710;90711 90709 3 KEETQPPVALKK DRKNPLPPSVGVVDKKEETQPPVALKKEGI VDKKEETQPPVALKKEGIRRVGRRPDQQLQ K K E K K E 1 0 0 0 0 1 2 0 0 0 1 3 0 0 2 0 1 0 0 1 0 0 12 2 1366.782 Q8NC51 Q8NC51 92 103 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.00021361 62.528 By matching By MS/MS By matching By matching 1 1 2 1 0.79424 0.75728 7.0172 5 Linear 0.70926 0.68988 NaN 1 0 Median 0.81298 0.76961 NaN 1 0 Median 0.67343 0.79282 6.4848 2 0 Median 0.6896 0.71963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3531500 1928700 1602800 860460 466530 393930 1598400 856270 742150 788870 450360 338510 283770 155540 128240 0 0 0 0 0 0 17126 3414 17859 89068;89069;89070;89071;89072 90712;90713 90712 2 KEETVAIPSWR QPPPSPLPLRESSPKKEETVAIPSWRDHSV SSPKKEETVAIPSWRDHSVEPLRDPNPSDL K K E W R D 1 1 0 0 0 0 2 0 0 1 0 1 0 0 1 1 1 1 0 1 0 0 11 1 1314.6932 J3KSZ8 J3KSZ8 453 463 MSL1 yes yes 2 0.051617 43.185 By MS/MS 2 39.511 43.447 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39.511 43.447 NaN 1 1 Median NaN NaN NaN 0 0 Median 5047200 167910 4879300 0 0 0 0 0 0 0 0 0 0 0 0 5047200 167910 4879300 0 0 0 17127 1332 17860 89073;89074 90714;90715 90715 2 KEFFLQR PVDLELEWVLGKMPRKEFFLQRKPPMLQPL WVLGKMPRKEFFLQRKPPMLQPLALPPGLS R K E Q R K 0 1 0 0 0 1 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 1 966.5287 O15067 O15067 639 645 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.026051 63.148 By MS/MS 1 0.54598 0.50112 NaN 1 Median NaN NaN NaN 0 0 Median 0.54598 0.50112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29271000 11326000 17945000 0 0 0 29271000 11326000 17945000 0 0 0 0 0 0 0 0 0 0 0 0 17128 1518 17861 89075 90716 90716 1 KEFGPVVIDYGK QIRKARGTFDNAETKKEFGPVVIDYGKVQS ETKKEFGPVVIDYGKVQSKVNLKYDSWHKE K K E G K V 0 0 0 1 0 0 1 2 0 1 0 2 0 1 1 0 0 0 1 2 0 0 12 1 1350.7184 Q14204 Q14204 1100 1111 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 0.039615 29.317 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.79526 0.87489 12.6 6 Median 0.78024 0.84997 6.9314 2 0 Median 0.90779 0.86321 NaN 1 0 Median 0.77151 0.87489 0.012296 2 0 Median 1.1431 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48360000 26212000 22148000 24591000 13232000 11359000 2530600 1121900 1408700 20387000 11462000 8924800 852060 396150 455910 0 0 0 0 0 0 17129 2865 17862 89076;89077;89078;89079;89080;89081 90717;90718 90717 1 KEFSIDVGYER SKWIKQYTGINAISKKEFSIDVGYERFLGP AISKKEFSIDVGYERFLGPEIFFHPEFANP K K E E R F 0 1 0 1 0 0 2 1 0 1 0 1 0 1 0 1 0 0 1 1 0 0 11 1 1341.6565 B4DXW1;P61158 B4DXW1 214 224 ACTR3 Actin-related protein 3 yes no 3 0.0063989 48.568 By MS/MS 1 1.3761 1.3932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3761 1.3932 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5187000 2379300 2807700 0 0 0 0 0 0 5187000 2379300 2807700 0 0 0 0 0 0 0 0 0 17130 607 17863 89082 90719 90719 1 KEFSPFGTITSAK YVKNLDDGIDDERLRKEFSPFGTITSAKVM LRKEFSPFGTITSAKVMMEGGRSKGFGFVC R K E A K V 1 0 0 0 0 0 1 1 0 1 0 2 0 2 1 2 2 0 0 0 0 0 13 1 1411.7347 P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YAP2;H0YB86 P11940 312 324 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2;3 4.9665E-07 162.68 By MS/MS By matching By MS/MS By MS/MS By matching By matching 4 1 3 2 4 4 0.83506 0.84864 25.92 18 Median 0.84764 0.8306 34.179 4 0 Median 1.1762 1.1331 NaN 1 0 Median 0.75792 0.84709 14.33 3 0 Median 0.97112 0.89669 7.5305 2 0 Median 0.76564 0.87173 34.622 4 0 Median 0.88775 0.75971 23.427 4 0 Median 99745000 56055000 43691000 60584000 34363000 26222000 376260 200940 175320 20208000 11559000 8649200 2475400 1180800 1294600 13527000 7329600 6197600 2574400 1422100 1152300 17131 1973 17864 89083;89084;89085;89086;89087;89088;89089;89090;89091;89092;89093;89094;89095;89096;89097;89098;89099;89100 90720;90721;90722;90723;90724;90725;90726;90727;90728;90729;90730;90731;90732 90726 13 KEFTLEFSR ERANACNSVIKQLMKKEFTLEFSRDRKSMS IKQLMKKEFTLEFSRDRKSMSVYCTPNKPS K K E S R D 0 1 0 0 0 0 2 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 9 1 1155.5924 P16615;H7C5W9;O14983;Q93084 P16615 481 489 ATP2A2;ATP2A1;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 0.007513 66.621 By MS/MS 1 0.82685 0.76765 NaN 1 Median NaN NaN NaN 0 0 Median 0.82685 0.76765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8361700 5207600 3154100 0 0 0 8361700 5207600 3154100 0 0 0 0 0 0 0 0 0 0 0 0 17132 2031 17865 89101 90733 90733 1 KEGDLIAAQAR KVREEFKELKARNTKKEGDLIAAQARLKDL RNTKKEGDLIAAQARLKDLEALLNSKEAAL K K E A R L 3 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 P02545;H0YAB0;Q3BDU5 P02545 123 133 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00092784 65.305 By MS/MS By MS/MS By MS/MS 1 1 1 1.2492 1.2127 4.333 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1387 1.2127 NaN 1 0 Median 1.3432 1.2316 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2492 1.1351 NaN 1 0 Median 3573900 1792000 1781900 0 0 0 0 0 0 823170 347140 476040 674710 268580 406130 0 0 0 2076000 1176200 899760 17133 1834;3010 17866 89102;89103;89104 90734;90735;90736;90737 90737 4 KEGEEEEENTEEPPQGEEEESMETQE IVTPSEKAYEKPPEKKEGEEEEENTEEPPQ EPPQGEEEESMETQE_______________ K K E Q E - 0 0 1 0 0 2 14 2 0 0 0 1 1 0 2 1 2 0 0 0 0 0 26 1 3051.1782 B4DY09;Q12905 B4DY09 327 352 ILF2 Interleukin enhancer-binding factor 2 yes no 3 4.0606E-05 28.665 By MS/MS 1 0.66779 0.70802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66779 0.70802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4816000 2448900 2367200 0 0 0 0 0 0 4816000 2448900 2367200 0 0 0 0 0 0 0 0 0 17134 609 17867 89105 90738 90738 1 KEGGLGPLNIPLLADVTR VDSQFTHLAWINTPRKEGGLGPLNIPLLAD GLGPLNIPLLADVTRRLSEDYGVLKTDEGI R K E T R R 1 1 1 1 0 0 1 3 0 1 4 1 0 0 2 0 1 0 0 1 0 0 18 1 1862.0625 P32119;A6NIW5 P32119 92 109 PRDX2 Peroxiredoxin-2 yes no 2;3 4.8696E-32 199.58 By MS/MS By MS/MS By matching By matching 5 9 1 6 0.6994 0.6878 41.488 21 Median 0.62667 0.6677 25.373 5 0 Median 0.88974 0.80341 57.162 9 0 Median 0.7329 0.74676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72752 0.65324 29.126 6 0 Median 204160000 110100000 94061000 90576000 51249000 39327000 109960000 56913000 53051000 463890 262070 201820 0 0 0 0 0 0 3158900 1677900 1481000 17135 2215 17868 89106;89107;89108;89109;89110;89111;89112;89113;89114;89115;89116;89117;89118;89119;89120;89121;89122;89123;89124;89125;89126 90739;90740;90741;90742;90743;90744;90745;90746;90747;90748;90749;90750;90751;90752;90753 90746 15 KEGGLGPLNIPLLADVTRR VDSQFTHLAWINTPRKEGGLGPLNIPLLAD LGPLNIPLLADVTRRLSEDYGVLKTDEGIA R K E R R L 1 2 1 1 0 0 1 3 0 1 4 1 0 0 2 0 1 0 0 1 0 0 19 2 2018.1637 P32119;A6NIW5 P32119 92 110 PRDX2 Peroxiredoxin-2 yes no 3;4 2.7063E-18 128.74 By MS/MS By MS/MS 2 2 0.7892 0.78023 2.8181 4 Linear 0.75525 0.75777 3.4827 2 0 Median 0.82391 0.76303 3.3493 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30182000 16581000 13601000 10997000 6086400 4910400 19185000 10494000 8690600 0 0 0 0 0 0 0 0 0 0 0 0 17136 2215 17869 89127;89128;89129;89130 90754;90755;90756;90757 90755 4 KEGKPTIVEEDDPELFK EYVEHTVKERKKQLKKEGKPTIVEEDDPEL GKPTIVEEDDPELFKQAVYKQTMKLFAELE K K E F K Q 0 0 0 2 0 0 4 1 0 1 1 3 0 1 2 0 1 0 0 1 0 0 17 2 1972.9993 O75937 O75937 143 159 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 3 0.017688 20.65 By MS/MS 1 0.53573 0.50715 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53573 0.50715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2160500 1336900 823620 0 0 0 0 0 0 0 0 0 2160500 1336900 823620 0 0 0 0 0 0 17137 1709 17870 89131 90758 90758 1 KEGLDEVAGIINDAK SELVSKIGDKNWKIRKEGLDEVAGIINDAK KEGLDEVAGIINDAKFIQPNIGELPTALKG R K E A K F 2 0 1 2 0 0 2 2 0 2 1 2 0 0 0 0 0 0 0 1 0 0 15 1 1570.8203 Q14008 Q14008 878 892 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.024211 17.701 By MS/MS By matching 1 1 1.147 1.1855 21.456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2001 1.3797 NaN 1 0 Median 1.0962 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3037100 1281300 1755800 0 0 0 0 0 0 2813000 1174000 1639100 224040 107290 116750 0 0 0 0 0 0 17138 2850 17871 89132;89133 90759 90759 1 KEGPYDVVVLPGGNLGAQNLSESAAVK RDVVICPDASLEDAKKEGPYDVVVLPGGNL GNLGAQNLSESAAVKEILKEQENRKGLIAA K K E V K E 3 0 2 1 0 1 2 4 0 0 3 2 0 0 2 2 0 0 1 4 0 0 27 1 2711.413 Q99497;K7EN27 Q99497 63 89 PARK7 Protein deglycase DJ-1 yes no 3 3.2257E-10 50.505 By MS/MS By matching 1 1 0.81322 0.78489 9.7698 2 Median 0.72083 0.7325 NaN 1 0 Median 0.91746 0.84103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15500000 8105100 7395300 14370000 7476200 6893400 1130700 628820 501850 0 0 0 0 0 0 0 0 0 0 0 0 17139 3749 17872 89134;89135 90760;90761 90761 2 KEGYDFHSSSEFEIVK IAGRDVSRFLRLYLRKEGYDFHSSSEFEIV EGYDFHSSSEFEIVKAIKERACYLSINPQK R K E V K A 0 0 0 1 0 0 3 1 1 1 0 2 0 2 0 3 0 0 1 1 0 0 16 1 1900.8843 P61163;R4GMT0;A0A1B0GVS3 P61163 200 215 ACTR1A Alpha-centractin yes no 3 0.0057016 25.319 By matching By matching By MS/MS By matching 1 1 1 1 0.97981 0.95736 7.1725 4 Median 0.92143 0.85959 NaN 1 0 Median 1.0419 0.94825 NaN 1 0 Median 0.88697 0.96655 NaN 1 0 Median 1.1464 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26282000 12721000 13562000 5334900 2511400 2823500 566720 251720 315000 19443000 9592300 9851000 937380 365170 572200 0 0 0 0 0 0 17140 2547 17873 89136;89137;89138;89139 90762;90763 90763 2 KEHVNVVFIGHVDAGK IPKPKSVVAPPGAPKKEHVNVVFIGHVDAG EHVNVVFIGHVDAGKSTIGGQIMYLTGMVD K K E G K S 1 0 1 1 0 0 1 2 2 1 0 2 0 1 0 0 0 0 0 4 0 0 16 1 1747.937 P15170;H3BR35;H3BSV8;Q8IYD1 P15170 72 87 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 3;4 5.1286E-07 86.455 By MS/MS By matching By MS/MS By MS/MS 4 1 3 5 1.051 1.0179 16.99 13 Median 1.2966 1.2831 12.398 4 1 Median 1.051 0.98326 NaN 1 0 Median 1.1375 1.1915 22.263 3 1 Plateau 1.0067 1.0063 11.133 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48177000 23137000 25040000 16216000 7392500 8823300 5166000 3135200 2030700 16458000 7690500 8767200 10337000 4918400 5419000 0 0 0 0 0 0 17141 2016 17874 89140;89141;89142;89143;89144;89145;89146;89147;89148;89149;89150;89151;89152 90764;90765;90766;90767;90768;90769;90770;90771;90772 90768 9 KEIADYLAAGKDER KLLEKKKTELAQKARKEIADYLAAGKDERA RKEIADYLAAGKDERARIRVEHIIREDYLV R K E E R A 3 1 0 2 0 0 2 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 14 2 1577.8049 P53990;H3BMU1;H3BUI0;H3BQF7;F5GXM3;H3BRE2;H3BPP6 P53990 38 51 IST1 IST1 homolog yes no 3 0.00013677 67.605 By MS/MS By matching 2 1 2.1577 2.285 9.0175 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9122 2.1438 NaN 1 0 Median 2.4346 2.4354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16239000 6381400 9858000 0 0 0 0 0 0 15099000 5770700 9328500 1140100 610660 529460 0 0 0 0 0 0 17142 2477 17875 89153;89154;89155 90773;90774;90775 90773 3 KEIHTVPDMGK SEEAPPATQNFIIPKKEIHTVPDMGKWKRS IIPKKEIHTVPDMGKWKRSQVPFGTVAYAD K K E G K W 0 0 0 1 0 0 1 1 1 1 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1253.6438 A6PVN5;Q15257;Q5T949;Q5T948;A6PVN6;Q68CR8 A6PVN5 28 38 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator yes no 3 0.027121 21.23 By MS/MS By MS/MS By matching 1 2 1 0.82972 0.80124 15.732 4 Median 0.81581 0.76326 NaN 1 0 Median 0.80056 0.72389 21.225 2 0 Median 0.84387 0.89174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3425500 1876500 1549000 535820 288050 247770 2418300 1342200 1076100 471360 246230 225130 0 0 0 0 0 0 0 0 0 17143 533 17876 89156;89157;89158;89159 90776;90777;90778;90779 90776 4 KEITDIAAAAESLQPK GSGPPTPGPTTLGPKKEITDIAAAAESLQP EITDIAAAAESLQPKGYTLATTQVKTPIPL K K E P K G 4 0 0 1 0 1 2 0 0 2 1 2 0 0 1 1 1 0 0 0 0 0 16 1 1683.9043 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 582 597 SRCAP Helicase SRCAP yes no 3 0.014277 20.939 By MS/MS 1 1.0453 1.1875 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0453 1.1875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3963500 1642800 2320600 0 0 0 0 0 0 3963500 1642800 2320600 0 0 0 0 0 0 0 0 0 17144 3199 17877 89160 90780 90780 1 KELENLATSLEHYK RVARLYGKIITADPKKELENLATSLEHYKF KKELENLATSLEHYKFIVDYCEKHPEAAQE K K E Y K F 1 0 1 0 0 0 3 0 1 0 3 2 0 0 0 1 1 0 1 0 0 0 14 1 1673.8625 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 589 602 KIAA1279 KIF1-binding protein yes no 3 0.041745 23.881 By MS/MS 1 0.93228 0.96037 NaN 1 Median 0.93228 0.96037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5937700 3044000 2893800 5937700 3044000 2893800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17145 323 17878 89161 90781 90781 1 KELGLDEGVDSLK KRRAQEEAKEAEMSRKELGLDEGVDSLKAA SRKELGLDEGVDSLKAAIQSRQKDRQKEMD R K E L K A 0 0 0 2 0 0 2 2 0 0 3 2 0 0 0 1 0 0 0 1 0 0 13 1 1401.7351 Q8WXX5 Q8WXX5 205 217 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 5.6739E-07 109.24 By MS/MS By MS/MS 2 1 1.3693 1.4314 23.595 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4039 1.4697 3.7401 2 0 Median 1.1152 0.9792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14050000 6195300 7855200 0 0 0 0 0 0 11499000 5034500 6464100 2551800 1160800 1391000 0 0 0 0 0 0 17146 3522 17879 89162;89163;89164 90782;90783;90784;90785 90783 4 KELNYFAK VGVNLPQKAGGFLMKKELNYFAKALESPER AGGFLMKKELNYFAKALESPERPFLAILGG K K E A K A 1 0 1 0 0 0 1 0 0 0 1 2 0 1 0 0 0 0 1 0 0 0 8 1 1011.5389 P00558 P00558 192 199 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.0049884 91.853 By MS/MS By MS/MS By matching 2 1 1 1.265 1.2699 32.457 4 Median 1.0972 1.1197 33.606 2 0 Median 1.2592 1.1357 NaN 1 0 Median 1.7912 1.8927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20907000 9691900 11215000 11179000 5536600 5641900 8298400 3565000 4733400 1429700 590250 839450 0 0 0 0 0 0 0 0 0 17147 1824 17880 89165;89166;89167;89168 90786;90787;90788 90788 3 KELPDPSQRPLGEPSAGLGEYLK SSPGDSSKKRGPKPRKELPDPSQRPLGEPS RPLGEPSAGLGEYLKGRKLDDTPSGAGKFP R K E L K G 1 1 0 1 0 1 3 3 0 0 4 2 0 0 4 2 0 0 1 0 0 0 23 2 2480.2911 Q9HC52;C9J6K3 Q9HC52 205 227 CBX8 Chromobox protein homolog 8 yes no 3 1.6286E-07 41.115 By MS/MS By matching 1 1 0.57286 0.64472 16.564 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49428 0.57346 NaN 1 0 Median 0.66393 0.72483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7592300 5015400 2576900 0 0 0 0 0 0 7029200 4686900 2342300 563090 328500 234590 0 0 0 0 0 0 17148 4026 17881 89169;89170 90789;90790 90789 2 KELPEYYELIR SGRQLSEVFIQLPSRKELPEYYELIRKPVD LPSRKELPEYYELIRKPVDFKKIKERIRNH R K E I R K 0 1 0 0 0 0 3 0 0 1 2 1 0 0 1 0 0 0 2 0 0 0 11 1 1451.766 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A0U1RRF5;P51531;F6VDE0;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;B1ALG2;F6T8Q0;B1ALG1;A0A0U1RR09;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51532 1492 1502 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 0.00063517 84.17 By MS/MS 3 0.77585 0.92901 16.31 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77585 0.92901 16.31 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10349000 5516900 4832100 0 0 0 0 0 0 10349000 5516900 4832100 0 0 0 0 0 0 0 0 0 17149 366;2433 17882 89171;89172;89173 90791;90792;90793 90791 3 KELSDIAHR ______________________________ LTPEQKKELSDIAHRIVAPGKGILAADEST K K E H R I 1 1 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 9 1 1067.5724 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8 J3KPS3 14 22 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 0.0025306 77.732 By MS/MS By matching 1 1 0.87349 0.90241 5.1617 2 Median NaN NaN NaN 0 0 Median 0.99867 0.93596 NaN 1 0 Median 0.764 0.87007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3111000 1651600 1459400 0 0 0 2858200 1513500 1344600 252850 138040 114810 0 0 0 0 0 0 0 0 0 17150 1310 17883 89174;89175 90794;90795 90795 2 KEMEQLVLDK SDAFDACNLNQEDLRKEMEQLVLDKKQEET QEDLRKEMEQLVLDKKQEETAVLEEDSADW R K E D K K 0 0 0 1 0 1 2 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 10 1 1231.6482 Q96A49 Q96A49 292 301 SYAP1 Synapse-associated protein 1 yes yes 3 0.059597 11.866 By MS/MS 1 0.85667 0.80629 NaN 1 Median NaN NaN NaN 0 0 Median 0.85667 0.80629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1057600 564330 493310 0 0 0 1057600 564330 493310 0 0 0 0 0 0 0 0 0 0 0 0 17151 3594 17884 89176 90796 90796 1 KEMQPTHPIR DQSQQAYQEAFEISKKEMQPTHPIRLGLAL FEISKKEMQPTHPIRLGLALNFSVFYYEIL K K E I R L 0 1 0 0 0 1 1 0 1 1 0 1 1 0 2 0 1 0 0 0 0 0 10 1 1235.6445 P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80;P27348;P31946 P63104 158 167 YWHAZ;YWHAQ;YWHAB 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 3 0.019078 24.855 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.7875 0.77363 15.698 6 Median 0.81706 0.86011 NaN 1 0 Median 0.76376 0.7201 NaN 1 0 Median 0.81199 0.83113 NaN 1 0 Median 0.68946 0.61032 NaN 1 0 Median 0.89705 0.93409 NaN 1 0 Median 0.75743 0.69905 NaN 1 0 Median 3780300 2058400 1721900 1743000 950810 792160 621440 345960 275480 1046900 562680 484230 111930 65226 46705 195870 99724 96144 61206 34009 27198 17152 2618;2210;2152 17885 89177;89178;89179;89180;89181;89182 90797;90798;90799;90800;90801;90802 90798 6 KENGPVVETVQVPLSK LQIMNKTISKPRASRKENGPVVETVQVPLS ENGPVVETVQVPLSKRAKFVGPGGYNLKKL R K E S K R 0 0 1 0 0 1 2 1 0 0 1 2 0 0 2 1 1 0 0 4 0 0 16 1 1722.9516 Q8TCS8 Q8TCS8 601 616 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 3 0.001634 30.974 By matching By matching By MS/MS 1 1 1 0.9049 0.884 27.926 3 Median 0.62141 0.64199 NaN 1 0 Median 1.1594 1.1199 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9049 0.884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6677400 3353400 3324000 2774000 1424100 1349900 854710 439700 415010 0 0 0 3048700 1489700 1559000 0 0 0 0 0 0 17153 3467 17886 89183;89184;89185 90803 90803 1 KENPLQFK TWLKLDKKVSAQEVRKENPLQFKFRAKFYP VSAQEVRKENPLQFKFRAKFYPEDVAEELI R K E F K F 0 0 1 0 0 1 1 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 8 1 1002.5498 P15311;E7EQR4;E9PQ82;P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3;A0A2R8Y5P0 P15311 72 79 EZR;RDX Ezrin;Radixin no no 2 0.0037773 127.02 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 0.96591 0.9731 14.747 6 Median 0.88923 0.91423 NaN 1 0 Median 1.0263 0.97547 1.6964 2 0 Median 0.92772 1.0357 NaN 1 0 Median 0.86656 0.82302 25.041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47066000 22832000 24235000 9995700 5278800 4717000 17583000 8386400 9196400 9831200 4311600 5519600 9656600 4854800 4801900 0 0 0 0 0 0 17154 879;2235 17887 89186;89187;89188;89189;89190;89191 90804;90805;90806;90807;90808;90809;90810;90811;90812;90813 90811 10 KENVATTDTLESTTVGTSV IKEVLLFPAMKPEDKKENVATTDTLESTTV ATTDTLESTTVGTSV_______________ K K E S V - 1 0 1 1 0 0 2 1 0 0 1 1 0 0 0 2 6 0 0 3 0 0 19 1 1951.9586 Q15046 Q15046 579 597 KARS Lysine--tRNA ligase yes yes 2 1.6077E-07 69.716 By MS/MS By matching By matching By matching 2 1 1 1 1.1113 1.0114 23.057 5 Median 1.2647 1.2187 26.369 2 0 Median 1.1113 0.96054 NaN 1 0 Median 1.1249 1.1961 NaN 1 0 Median 0.9291 0.7989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16643000 7380000 9263000 11223000 4995400 6227900 1706600 644780 1061800 2863300 1337000 1526200 849870 402810 447060 0 0 0 0 0 0 17155 2919 17888 89192;89193;89194;89195;89196 90814;90815 90815 2 KEPAVLELEGK APKPQTSPSPKRATKKEPAVLELEGKKWRV RATKKEPAVLELEGKKWRVENQENVSNLVI K K E G K K 1 0 0 0 0 0 3 1 0 0 2 2 0 0 1 0 0 0 0 1 0 0 11 1 1211.6762 Q01518 Q01518 317 327 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2;3 0.00068826 61.353 By MS/MS By MS/MS 3 2 0.86351 0.81777 5.7058 5 Median 0.85639 0.81733 5.9189 3 0 Median 0.90252 0.84575 2.1304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43470000 22226000 21243000 21871000 11254000 10617000 21598000 10972000 10626000 0 0 0 0 0 0 0 0 0 0 0 0 17156 2686 17889 89197;89198;89199;89200;89201 90816;90817;90818;90819;90820 90816 5 KEPAVLELEGKK APKPQTSPSPKRATKKEPAVLELEGKKWRV ATKKEPAVLELEGKKWRVENQENVSNLVIE K K E K K W 1 0 0 0 0 0 3 1 0 0 2 3 0 0 1 0 0 0 0 1 0 0 12 2 1339.7711 Q01518 Q01518 317 328 CAP1 Adenylyl cyclase-associated protein 1 yes yes 3 1.903E-05 94.547 By MS/MS By MS/MS 1 1 0.94523 0.90702 5.1446 2 Median 0.96704 0.94063 NaN 1 0 Median 0.9239 0.87462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21378000 11281000 10097000 8876000 4667800 4208200 12502000 6613200 5888800 0 0 0 0 0 0 0 0 0 0 0 0 17157 2686 17890 89202;89203 90821;90822;90823 90823 3 KEPFFHGHDNYDQLVR DMWSLGCMLASMIFRKEPFFHGHDNYDQLV EPFFHGHDNYDQLVRIAKVLGTEDLYDYID R K E V R I 0 1 1 2 0 1 1 1 2 0 1 1 0 2 1 0 0 0 1 1 0 0 16 1 2000.9493 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2 P68400 229 244 CSNK2A1 Casein kinase II subunit alpha yes no 3;4 1.8652E-06 85.619 By MS/MS By MS/MS 3 3 0.94145 0.99834 65.487 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90353 1.004 1.8517 3 0 Median 1.0347 0.90381 98.135 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 134640000 55053000 79589000 0 0 0 0 0 0 93681000 47942000 45739000 40961000 7111100 33850000 0 0 0 0 0 0 17158 394 17891 89204;89205;89206;89207;89208;89209 90824;90825;90826;90827;90828;90829 90827 5 KEPMEALNTAQGAR GGLPGGPRRLGTHPKKEPMEALNTAQGARD KKEPMEALNTAQGARDFIYSLHSTERSCLL K K E A R D 3 1 1 0 0 1 2 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 14 1 1514.7511 Q6PI78 Q6PI78 60 73 TMEM65 Transmembrane protein 65 yes yes 3 0.010271 24.935 By MS/MS 1 1.2153 1.072 NaN 1 Median NaN NaN NaN 0 0 Median 1.2153 1.072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 773090 338810 434290 0 0 0 773090 338810 434290 0 0 0 0 0 0 0 0 0 0 0 0 17159 3172 17892 89210 90830;90831 90831 2 KEPPKEETAQLTGPEAGR PGSDEVAKIQTPPPKKEPPKEETAQLTGPE PKEETAQLTGPEAGRKPARGVGSGGQGPPP K K E G R K 2 1 0 0 0 1 4 2 0 0 1 2 0 0 3 0 2 0 0 0 0 0 18 2 1936.9854 P48634 P48634 883 900 PRRC2A Protein PRRC2A yes yes 3 0.0093643 23.562 By matching By MS/MS 1 1 0.59669 0.62833 23.407 2 Median NaN NaN NaN 0 0 Median 0.53748 0.53249 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66241 0.74143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1909300 1193800 715480 0 0 0 1443300 917510 525830 0 0 0 465970 276320 189650 0 0 0 0 0 0 17160 2363 17893 89211;89212 90832 90832 1 KEPPLTPVPLKR ATAVPSGKIASPVSRKEPPLTPVPLKRAEF VSRKEPPLTPVPLKRAEFAGDDVQVESTEE R K E K R A 0 1 0 0 0 0 1 0 0 0 2 2 0 0 4 0 1 0 0 1 0 0 12 2 1373.8395 A0A087WU64;A6NMQ1;P09884 A0A087WU64 214 225 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.00013482 79.492 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.55744 0.57046 18.854 6 Median 0.48951 0.52503 3.872 2 1 Median 0.62668 0.66583 14.001 2 0 Median 0.35436 0.46817 NaN 1 0 Median 0.65424 0.73228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22779000 14138000 8641100 9473100 6058900 3414200 7275800 4177900 3097900 4031500 2688500 1343100 1998300 1212400 785890 0 0 0 0 0 0 17161 26 17894 89213;89214;89215;89216;89217;89218 90833;90834;90835;90836;90837;90838;90839;90840 90834 8 KEPVDEDLYPEHYR FTFNIKLSSPVKRPRKEPVDEDLYPEHYRK RKEPVDEDLYPEHYRKYSDYIKGSNLDAPE R K E Y R K 0 1 0 2 0 0 3 0 1 0 1 1 0 0 2 0 0 0 2 1 0 0 14 1 1788.8319 P26358 P26358 961 974 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3;4 1.2875E-08 117 By MS/MS By MS/MS 5 5 0.6785 0.69413 39.656 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65442 0.78387 19.744 5 0 Median 0.70348 0.67913 47.479 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85354000 49836000 35518000 0 0 0 0 0 0 56039000 33019000 23020000 29316000 16817000 12498000 0 0 0 0 0 0 17162 2142 17895 89219;89220;89221;89222;89223;89224;89225;89226;89227;89228 90841;90842;90843;90844;90845;90846;90847;90848;90849;90850;90851;90852;90853 90849 12 KEPVDEDLYPEHYRK FTFNIKLSSPVKRPRKEPVDEDLYPEHYRK KEPVDEDLYPEHYRKYSDYIKGSNLDAPEP R K E R K Y 0 1 0 2 0 0 3 0 1 0 1 2 0 0 2 0 0 0 2 1 0 0 15 2 1916.9268 P26358 P26358 961 975 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3;4 7.5307E-05 71.344 By MS/MS By MS/MS 3 2 0.63321 0.82728 20.888 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53528 0.60994 18.58 3 1 Median 0.7906 0.89293 10.8 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68309000 38098000 30211000 0 0 0 0 0 0 61816000 35045000 26770000 6493000 3052300 3440700 0 0 0 0 0 0 17163 2142 17896 89229;89230;89231;89232;89233 90854;90855;90856;90857;90858;90859;90860;90861;90862 90857 9 KEQDSWSEAGGILFK RSCPELTSGPRMCPRKEQDSWSEAGGILFK KEQDSWSEAGGILFKGKVPMVVLQDILAVR R K E F K G 1 0 0 1 0 1 2 2 0 1 1 2 0 1 0 2 0 1 0 0 0 0 15 1 1693.8312 Q13111;K7EPA1 Q13111 220 234 CHAF1A Chromatin assembly factor 1 subunit A yes no 3 0.055183 17.219 By MS/MS By matching By matching 1 1 1 1.0202 0.95486 25.971 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2925 1.4788 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90972 0.95486 NaN 1 0 Median 1.0202 0.93236 NaN 1 0 Median 6785500 3440300 3345200 0 0 0 0 0 0 2191700 1124900 1066800 0 0 0 4444700 2258600 2186200 149050 56827 92225 17164 2785 17897 89234;89235;89236 90863 90863 0 KEQEHMINWVEK NRLDYHISVQNMMRRKEQEHMINWVEKHVV MRRKEQEHMINWVEKHVVQSISTQQEKETI R K E E K H 0 0 1 0 0 1 3 0 1 1 0 2 1 0 0 0 0 1 0 1 0 0 12 1 1569.761 Q5QNZ2;P24539 Q5QNZ2 149 160 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3 0.00023809 58.32 By matching By MS/MS 1 1 1.257 1.2131 11.14 2 Median 1.1014 1.1212 NaN 1 0 Median 1.4347 1.3125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6931900 2844300 4087600 3748600 1611400 2137300 3183200 1232900 1950300 0 0 0 0 0 0 0 0 0 0 0 0 17165 2124 17898 89237;89238 90864 90864 1 KEQLKEELNENQSTPK LNSFLESQKREYKLRKEQLKEELNENQSTP EQLKEELNENQSTPKKEKQEWLSKQKENIQ R K E P K K 0 0 2 0 0 2 4 0 0 0 2 3 0 0 1 1 1 0 0 0 0 0 16 2 1913.9694 Q7L7X3 Q7L7X3 563 578 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 3 0.070675 9.788 By matching By MS/MS 1 1 1.05 1.1647 11.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89199 1.0719 NaN 1 0 Median 1.2359 1.2657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1866200 1022900 843220 0 0 0 0 0 0 1138600 664610 473960 727590 358320 369270 0 0 0 0 0 0 17166 3227 17899 89239;89240 90865 90865 1 KEQTADGVAVIPVLQR LLILRTWESVKRTTRKEQTADGVAVIPVLQ EQTADGVAVIPVLQRTLHYECIVLVKQFRP R K E Q R T 2 1 0 1 0 2 1 1 0 1 1 1 0 0 1 0 1 0 0 3 0 0 16 1 1722.9628 A6NFX8;Q9UKK9;H0YEY4;A6NCQ0;A6NJU6 A6NFX8 68 83 NUDT5 ADP-sugar pyrophosphatase yes no 3 0.051655 9.7492 By matching By MS/MS 2 1 0.97718 0.97632 59.576 3 Median 0.62172 0.64127 59.446 2 0 Median 1.4251 1.3323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11841000 6371300 5469500 10074000 5705200 4368400 1767300 666110 1101100 0 0 0 0 0 0 0 0 0 0 0 0 17167 511 17900 89241;89242;89243 90866 90866 1 KEQVEEDNEVSSGLK LKEQLNLLSRAEEAKKEQVEEDNEVSSGLK KEQVEEDNEVSSGLKQNYDEMSPAGQISKE K K E L K Q 0 0 1 1 0 1 4 1 0 0 1 2 0 0 0 2 0 0 0 2 0 0 15 1 1689.8057 Q14789;E7EU81;H0Y867 Q14789 946 960 GOLGB1 Golgin subfamily B member 1 yes no 3 7.6531E-05 57.788 By MS/MS 1 1.1921 1.1349 NaN 1 Median NaN NaN NaN 0 0 Median 1.1921 1.1349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3901700 1745500 2156200 0 0 0 3901700 1745500 2156200 0 0 0 0 0 0 0 0 0 0 0 0 17168 2900 17901 89244 90867;90868 90868 2 KESPLLFK TWLKLNKKVTAQDVRKESPLLFKFRAKFYP VTAQDVRKESPLLFKFRAKFYPEDVSEELI R K E F K F 0 0 0 0 0 0 1 0 0 0 2 2 0 1 1 1 0 0 0 0 0 0 8 1 960.56442 P26038;V9GZ54 P26038 72 79 MSN Moesin yes no 2 0.0035029 121.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0319 0.98178 15.594 5 Median 0.87425 0.89905 NaN 1 0 Median 1.0319 0.96345 NaN 1 0 Median 1.0285 1.149 NaN 1 0 Median 1.1997 1.1394 21.055 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34358000 16849000 17509000 9349600 4889500 4460100 10380000 4954600 5425400 9262200 4455900 4806300 5366100 2549200 2816900 0 0 0 0 0 0 17169 2139 17902 89245;89246;89247;89248;89249 90869;90870;90871;90872;90873;90874;90875 90873 7 KESYSIYVYK TKAQKKDGKKRKRSRKESYSIYVYKVLKQV RKRSRKESYSIYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 3 1 0 0 10 1 1278.6496 Q16778;P33778;P23527;P06899;Q8N257 Q16778 35 44 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B no no 2;3 4.1491E-05 143.5 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 2 16 10 0.9892 1.0676 26.554 36 Median 1.4504 1.4469 NaN 1 0 Median 2.139 1.8862 35.719 4 0 Linear 0.94274 0.95959 15.322 3 0 Plateau 1.4022 1.2625 23.527 2 0 Median 0.92159 0.97362 17.925 16 1 Median 1.423 1.2278 19.286 10 1 Median 2367600000 1115600000 1252000000 13875000 6446600 7428700 32961000 12663000 20298000 6016700 3489700 2526900 9623500 3948500 5675100 1217300000 626600000 590660000 1087900000 462460000 625430000 17170 2117 17903 89250;89251;89252;89253;89254;89255;89256;89257;89258;89259;89260;89261;89262;89263;89264;89265;89266;89267;89268;89269;89270;89271;89272;89273;89274;89275;89276;89277;89278;89279;89280;89281;89282;89283;89284;89285 90876;90877;90878;90879;90880;90881;90882;90883;90884;90885;90886;90887;90888;90889;90890;90891;90892;90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904;90905;90906;90907;90908;90909;90910;90911;90912;90913;90914;90915;90916;90917;90918;90919;90920;90921;90922;90923;90924;90925;90926;90927;90928;90929 90916 54 KESYSVYVYK TKAQKKDGKKRKRSRKESYSVYVYKVLKQV RKRSRKESYSVYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 3 2 0 0 10 1 1264.634 U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 35 44 HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2;3 1.9216E-07 166.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 11 15 1.2444 1.1173 21.229 32 Median 1.5206 1.5134 NaN 1 0 Median 1.6606 1.4471 1.1871 3 1 Median 1.0422 1.0423 10.354 2 0 Median 1.5989 1.4421 16.842 3 2 Median 0.92538 1.0195 20.431 10 2 Median 1.3303 1.1292 11.536 13 6 Median 3554600000 1691400000 1863200000 25476000 10926000 14550000 51362000 19726000 31637000 46244000 23360000 22884000 33947000 13172000 20775000 1760400000 894780000 865570000 1637200000 729410000 907820000 17171 2521 17904 89286;89287;89288;89289;89290;89291;89292;89293;89294;89295;89296;89297;89298;89299;89300;89301;89302;89303;89304;89305;89306;89307;89308;89309;89310;89311;89312;89313;89314;89315;89316;89317;89318;89319;89320 90930;90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944;90945;90946;90947;90948;90949;90950;90951;90952;90953;90954;90955;90956;90957;90958;90959;90960;90961;90962;90963;90964;90965;90966;90967;90968;90969;90970;90971;90972;90973;90974;90975;90976;90977;90978;90979;90980;90981;90982;90983;90984;90985 90980 55 KESYSVYVYKVLK TKAQKKDGKKRKRSRKESYSVYVYKVLKQV SRKESYSVYVYKVLKQVHPDTGISSKAMGI R K E L K Q 0 0 0 0 0 0 1 0 0 0 1 3 0 0 0 2 0 0 3 3 0 0 13 2 1604.8814 U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 35 47 HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 3 0.00018392 70.563 By MS/MS By MS/MS 1 2 1.1319 0.9215 18.733 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72854 0.82336 NaN 1 0 Median 1.1979 1.0458 17.901 2 0 Median 51106000 27306000 23800000 0 0 0 0 0 0 0 0 0 0 0 0 32617000 19001000 13616000 18489000 8305100 10184000 17172 2521 17905 89321;89322;89323 90986;90987;90988 90986 3 KETKPEPMEEDLPENK EEEEIATPPPPPPPKKETKPEPMEEDLPEN ETKPEPMEEDLPENKKQALKEKELGNDAYK K K E N K K 0 0 1 1 0 0 5 0 0 0 1 3 1 0 3 0 1 0 0 0 0 0 16 2 1912.9088 P31948;F5H783 P31948 207 222 STIP1 Stress-induced-phosphoprotein 1 yes no 3;4 3.8408E-05 67.685 By MS/MS By MS/MS By matching 2 3 2 0.65715 0.66822 13.176 7 Median 0.64175 0.63936 10.919 2 0 Median 0.65715 0.63095 13.254 3 0 Median 0.62252 0.7276 12.04 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87530000 49873000 37657000 34683000 19336000 15347000 50206000 29176000 21030000 2640900 1360600 1280300 0 0 0 0 0 0 0 0 0 17173 2212 17906 89324;89325;89326;89327;89328;89329;89330 90989;90990;90991;90992;90993 90991 5 KEVKEELSAVER DTATSTKRCPKTRPRKEVKEELSAVERLTQ RPRKEVKEELSAVERLTQTSGQSTHTHKEP R K E E R L 1 1 0 0 0 0 4 0 0 0 1 2 0 0 0 1 0 0 0 2 0 0 12 2 1415.762 P46013 P46013 2610 2621 MKI67 Antigen KI-67 yes yes 3 1.0774E-06 109.16 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 2 2 1.0031 1.1633 17.712 12 Median 1.4727 1.4253 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0388 1.2782 6.9042 3 0 Median 0.9572 1.021 11.004 4 0 Median 0.99276 1.1685 10.233 2 0 Median 0.92482 0.91775 29.68 2 0 Median 41898000 19784000 22114000 1462700 660610 802090 0 0 0 23921000 11398000 12522000 4896400 2219500 2676900 6891100 3234900 3656100 4727000 2270200 2456800 17174 2335 17907 89331;89332;89333;89334;89335;89336;89337;89338;89339;89340;89341;89342 90994;90995;90996;90997;90998;90999;91000;91001;91002;91003;91004;91005;91006;91007;91008;91009;91010;91011 90997 18 KEVTQATQPEAIPQGTNITEEKPGR QQVSAADGKPGRQSRKEVTQATQPEAIPQG AIPQGTNITEEKPGRKRAEAKGNRSWSEES R K E G R K 2 1 1 0 0 3 4 2 0 2 0 2 0 0 3 0 4 0 0 1 0 0 25 2 2721.3933 Q6W2J9;H7BYY2;H7C2V9;A6NE70 Q6W2J9 1235 1259 BCOR BCL-6 corepressor yes no 3;4 7.7028E-20 84.947 By MS/MS 2 0.36288 0.47942 20.05 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36288 0.47942 20.05 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22000000 15650000 6349800 0 0 0 0 0 0 22000000 15650000 6349800 0 0 0 0 0 0 0 0 0 17175 3191 17908 89343;89344 91012;91013;91014 91012 3 KEVVEEAENGR VDTSSEITTKDLKEKKEVVEEAENGRDAPA LKEKKEVVEEAENGRDAPANGNANEENGEQ K K E G R D 1 1 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 11 1 1258.6153 B8ZZQ6;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 21 31 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 3 0.0084662 29.544 By MS/MS By matching 1 1 0.91981 0.86039 20.082 2 Median 0.99843 0.99167 NaN 1 0 Median 0.84737 0.7465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1210000 597820 612140 1035100 503880 531210 174870 93942 80933 0 0 0 0 0 0 0 0 0 0 0 0 17176 650 17909 89345;89346 91015;91016 91015 2 KEWDLKPIADR KSLLNKAIEAALAARKEWDLKPIADRAQIF LAARKEWDLKPIADRAQIFLKAADMLSGPR R K E D R A 1 1 0 2 0 0 1 0 0 1 1 2 0 0 1 0 0 1 0 0 0 0 11 2 1369.7354 P30038;Q5TF55 P30038 114 124 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes no 3 0.0025922 41.48 By MS/MS 1 0.50864 0.55063 NaN 1 Median 0.50864 0.55063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3205400 2080600 1124700 3205400 2080600 1124700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17177 2177 17910 89347 91017 91017 1 KEWLTNFMEDR AAISLAFSKKQIDDRKEWLTNFMEDRRQRK IDDRKEWLTNFMEDRRQRKLLGLPEDYLYG R K E D R R 0 1 1 1 0 0 2 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 11 1 1467.6816 P11388;Q02880;E9PCY5 P11388 662 672 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 3 0.0021706 39.266 By MS/MS By matching By matching 2 1 1 1.1423 1.3347 19.577 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1423 1.3347 1.1809 2 0 Median 1.5359 1.4827 NaN 1 0 Median 0.83818 0.94672 NaN 1 0 Median NaN NaN NaN 0 0 Median 4128700 2083300 2045400 0 0 0 0 0 0 3257300 1661000 1596300 121490 49001 72492 749920 373290 376630 0 0 0 17178 1963;2704 17911 89348;89349;89350;89351 91018;91019 91019 2 KEWSGLLEELAR VIGGDGSLTGANLFRKEWSGLLEELARNGQ LFRKEWSGLLEELARNGQIDKEAVQKYAYL R K E A R N 1 1 0 0 0 0 3 1 0 0 3 1 0 0 0 1 0 1 0 0 0 0 12 1 1429.7565 Q01813;Q5VSR5;V9GYV7 Q01813 139 150 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 0.0020643 52.79 By MS/MS By MS/MS By matching By matching 3 2 2 1 0.80264 0.80858 91.504 8 Median 1.0557 1.0713 27.093 3 0 Median 0.96086 0.95791 10.855 2 0 Median NaN NaN NaN 0 0 Median 0.17948 0.13974 23.757 2 0 Median NaN NaN NaN 0 0 Median 0.34543 0.33844 NaN 1 0 Median 15632000 8589100 7042900 4158900 1992900 2166000 7888100 3834700 4053400 0 0 0 2408900 2087100 321830 0 0 0 1176100 674390 501680 17179 2692 17912 89352;89353;89354;89355;89356;89357;89358;89359 91020;91021;91022;91023;91024 91023 5 KEYEEIMR DKKRLKWIHKALEQRKEYEEIMRDYIQKHP HKALEQRKEYEEIMRDYIQKHPELNISEEG R K E M R D 0 1 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 8 1 1096.5223 P17480 P17480 254 261 UBTF Nucleolar transcription factor 1 yes yes 2 0.020691 64.265 By MS/MS By MS/MS 1 1 0.86317 0.84391 7.373 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80846 0.88908 NaN 1 1 Median 0.92159 0.80104 NaN 1 1 Median 8630000 4193100 4436900 0 0 0 0 0 0 0 0 0 0 0 0 6320100 3223800 3096300 2309900 969290 1340600 17180 2040 17913 89360;89361 91025;91026 91025 2 KEYEQELSDDLHVER RRARLRKREAQLQSRKEYEQELSDDLHVER KEYEQELSDDLHVERYRQFWTRTKK_____ R K E E R Y 0 1 0 2 0 1 4 0 1 0 2 1 0 0 0 1 0 0 1 1 0 0 15 1 1888.8803 Q7Z7F7;X6R631 Q7Z7F7 104 118 MRPL55 39S ribosomal protein L55, mitochondrial yes no 3;4 7.6531E-05 51.147 By MS/MS By matching 2 1 0.96161 1.0029 22.032 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86788 0.90482 14.551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5766 1.268 NaN 1 0 Median 6871700 3823500 3048200 0 0 0 0 0 0 6536300 3694400 2841800 0 0 0 0 0 0 335470 129120 206360 17181 3257 17914 89362;89363;89364 91027;91028;91029;91030 91029 4 KEYGGLDVLVNNAGIAFK IDDLQSIRALRDFLRKEYGGLDVLVNNAGI GGLDVLVNNAGIAFKVADPTPFHIQAEVTM R K E F K V 2 0 2 1 0 0 1 3 0 1 2 2 0 1 0 0 0 0 1 2 0 0 18 1 1907.0153 P16152;E9PQ63;A8MTM1 P16152 79 96 CBR1 Carbonyl reductase [NADPH] 1 yes no 3 0.066647 5.5799 By MS/MS 1 1.1162 1.0875 NaN 1 Median 1.1162 1.0875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3136000 1394800 1741200 3136000 1394800 1741200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17182 2025 17915 89365 91031 91031 1 KEYLSSLQPR CLSNKEKILKEIEVKKEYLSSLQPRLNSIM EIEVKKEYLSSLQPRLNSIMQASLPVQEYL K K E P R L 0 1 0 0 0 1 1 0 0 0 2 1 0 0 1 2 0 0 1 0 0 0 10 1 1219.6561 Q13769;F8WCP5;H7C072 Q13769 223 232 THOC5 THO complex subunit 5 homolog yes no 3 0.0011455 51.927 By MS/MS By matching 1 1 0.96332 0.99955 13.842 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85323 0.90635 NaN 1 0 Median 1.0876 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2873000 1300900 1572100 0 0 0 0 0 0 2594600 1163500 1431100 278410 137350 141060 0 0 0 0 0 0 17183 2837 17916 89366;89367 91032;91033 91033 2 KEYNIGVLR QQFEDKPALSKTEDRKEYNIGVLRHLQVIF SKTEDRKEYNIGVLRHLQVIFGHLAASRLQ R K E L R H 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 9 1 1090.6135 Q93008;O00507 Q93008 1637 1645 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0046301 66.351 By matching By MS/MS 1 1 1.0482 1.0215 21.16 2 Median 0.85936 0.87951 NaN 1 0 Median 1.2785 1.1863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10559000 4669200 5890200 1572000 656910 915050 8987500 4012300 4975200 0 0 0 0 0 0 0 0 0 0 0 0 17184 3573 17917 89368;89369 91034 91034 1 KFAADAVKLER NEDQMAVEKLSDGIRKFAADAVKLERMLTE DGIRKFAADAVKLERMLTERMFNAENGK__ R K F E R M 3 1 0 1 0 0 1 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 11 2 1246.7034 P37837 P37837 314 324 TALDO1 Transaldolase yes yes 3 0.000226 64.55 By MS/MS 2 1.239 1.2976 10.453 2 Median 1.239 1.2976 10.453 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5864500 2664700 3199800 5864500 2664700 3199800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17185 2270 17918 89370;89371 91035;91036;91037 91036 3 KFADIGNTVK ITLAKCHEFLIFEDRKFADIGNTVKKQYEG IFEDRKFADIGNTVKKQYEGGIFKIASWAD R K F V K K 1 0 1 1 0 0 0 1 0 1 0 2 0 1 0 0 1 0 0 1 0 0 10 1 1091.5975 P11172;E9PFD2 P11172 314 323 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.053934 41.704 By MS/MS By MS/MS By matching 1 1 1 1.0016 0.96356 40.843 3 Median 1.0016 0.96356 NaN 1 0 Median 0.97846 0.91915 NaN 1 1 Median 1.7999 1.907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8246100 3856900 4389200 3649200 1710100 1939100 3757800 1871000 1886900 838990 275750 563240 0 0 0 0 0 0 0 0 0 17186 1953 17919 89372;89373;89374 91038;91039 91039 2 KFANSLVGVQQQLQAFNTYR LLEWIEQTIIILNNRKFANSLVGVQQQLQA LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE R K F Y R T 2 1 2 0 0 4 0 1 0 0 2 1 0 2 0 1 1 0 1 2 0 0 20 1 2311.2073 Q01082;A0A087WUZ3;F8W6C1 Q01082 329 348 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 4.272E-14 100.21 By matching By matching By MS/MS By matching 1 1 1 1 0.97002 1.0434 42.888 4 Median 1.4263 1.4503 NaN 1 0 Median 0.53484 0.52403 NaN 1 0 Median 0.89356 1.071 NaN 1 0 Median 1.053 1.0166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16613000 8289600 8323900 2840000 1165800 1674200 690370 421620 268760 12684000 6517500 6166600 399110 184670 214440 0 0 0 0 0 0 17187 2681 17920 89375;89376;89377;89378 91040 91040 1 KFASFNAYENHLK EESKGSATYCTVCSKKFASFNAYENHLKSR SKKFASFNAYENHLKSRRHVELEKKAVQAV K K F L K S 2 0 2 0 0 0 1 0 1 0 1 2 0 2 0 1 0 0 1 0 0 0 13 1 1567.7783 Q969S3 Q969S3 75 87 ZNF622 Zinc finger protein 622 yes yes 3 0.013924 24.425 By MS/MS By matching 1 1 1.4146 1.4085 9.6359 2 Median 1.3935 1.3157 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4361 1.5078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7460300 3107700 4352600 5111200 2186500 2924700 0 0 0 2349100 921210 1427900 0 0 0 0 0 0 0 0 0 17188 3586 17921 89379;89380 91041 91041 1 KFAYLGR VVPAALKVVRLKPTRKFAYLGRLAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT R K F G R L 1 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 1 853.48102 P40429;M0QYS1;Q8J015 P40429 134 140 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2 0.02169 72.021 By MS/MS By MS/MS By matching 2 1 1 1.5142 1.4264 15.101 4 Median NaN NaN NaN 0 0 Median 1.4691 1.3063 18.986 2 1 Median 1.3087 1.3619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8421 1.6243 NaN 1 0 Median 21092000 7601400 13491000 0 0 0 6760800 2834700 3926100 7372000 3378400 3993600 0 0 0 0 0 0 6959400 1388300 5571000 17189 2288 17922 89381;89382;89383;89384 91042;91043 91042 2 KFDDENFILK FTNHNGTGGKSIYGKKFDDENFILKHTGPG SIYGKKFDDENFILKHTGPGLLSMANSGPN K K F L K H 0 0 1 2 0 0 1 0 0 1 1 2 0 2 0 0 0 0 0 0 0 0 10 1 1267.6449 Q9UNP9;E9PKY5;E9PEQ6 Q9UNP9 218 227 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 2 0.014956 43.808 By MS/MS By matching By matching By matching 1 1 1 1 0.86504 0.77517 24.088 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9253 0.96697 NaN 1 0 Median 0.8087 0.7101 NaN 1 0 Median 0.52431 0.55376 NaN 1 0 Median 0.99396 0.8462 NaN 1 0 Median 15715000 7808000 7906700 0 0 0 0 0 0 9082300 3980800 5101500 1798200 822800 975360 2751800 2001900 749930 2082400 1002500 1079900 17190 4347 17923 89385;89386;89387;89388 91044 91044 1 KFDDFQK EEVGADLEQVEVLQKKFDDFQKDLKANESR EQVEVLQKKFDDFQKDLKANESRLKDINKV K K F Q K D 0 0 0 2 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 7 1 926.44978 A0A0D9SF54;Q13813 Q13813 1132 1138 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0047071 104.45 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.0274 1.0909 25.976 7 Median 1.0514 1.0909 NaN 1 0 Median 1.3225 1.2603 NaN 1 0 Median 0.7043 0.80807 48.556 2 0 Median 1.0119 0.94896 NaN 1 0 Median 1.0274 1.1034 NaN 1 0 Median 1.2003 1.0711 NaN 1 0 Median 30874000 14800000 16075000 866420 460940 405480 5778100 2481600 3296600 9380600 4879500 4501100 2146100 1112800 1033300 6061100 2943600 3117400 6642000 2921100 3721000 17191 264;2838 17924 89389;89390;89391;89392;89393;89394;89395 91045;91046;91047;91048;91049;91050;91051;91052 91049 8 KFDLGQDVIDFTGHALALYR EGIDPKKTTMRDVYKKFDLGQDVIDFTGHA QDVIDFTGHALALYRTDDYLDQPCYETINR K K F Y R T 2 1 0 3 0 1 0 2 1 1 3 1 0 2 0 0 1 0 1 1 0 0 20 1 2278.1746 P31150;P50395;Q5SX87;Q5SX91 P50395 174 193 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2;3 9.2843E-20 120.4 By MS/MS By MS/MS 3 2 1.1604 1.0577 23.716 5 Median NaN NaN NaN 0 0 Median 1.1604 1.0577 13.448 3 1 Median 1.3215 1.3121 37.954 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30680000 13874000 16806000 0 0 0 28286000 12744000 15542000 2394300 1130200 1264100 0 0 0 0 0 0 0 0 0 17192 2411;2201 17925 89396;89397;89398;89399;89400 91053;91054;91055;91056;91057;91058;91059 91056 7 KFDLNSPWEAFPVYR KRVVAEPVELAQEFRKFDLNSPWEAFPVYR KFDLNSPWEAFPVYRQPPESLKLEAGDKKP R K F Y R Q 1 1 1 1 0 0 1 0 0 0 1 1 0 2 2 1 0 1 1 1 0 0 15 1 1867.9257 O75489 O75489 232 246 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.0010343 46.706 By MS/MS 1 0.80987 0.8478 NaN 1 Median 0.80987 0.8478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6796200 3750400 3045800 6796200 3750400 3045800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17193 1678 17926 89401 91060;91061 91061 2 KFDQLLAEEK DHQRQSACNLEKKQKKFDQLLAEEKTISAK EKKQKKFDQLLAEEKTISAKYAEERDRAEA K K F E K T 1 0 0 1 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 1 1219.6449 P35579;Q7Z406;A0A0C4DFM8;A1L2Z2;P35580 P35579 1445 1454 MYH9;MYH14;MYH10 Myosin-9;Myosin-14;Myosin-10 no no 2;3 3.3344E-16 192.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 3 2 2 1.1489 1.0721 20.108 16 Median 1.2169 1.1226 11.897 2 0 Median 1.1207 1.0477 23.281 4 0 Median 0.80583 0.93877 11.871 3 0 Median 1.2202 1.15 10.926 3 0 Median 1.2682 1.3975 29.568 2 0 Median 1.1828 1.06 10.312 2 0 Median 477590000 220050000 257540000 195320000 84948000 110370000 147460000 67724000 79740000 83658000 45034000 38624000 6880700 2974400 3906300 30727000 13812000 16914000 13541000 5560600 7980100 17194 2244;2245;3242 17927 89402;89403;89404;89405;89406;89407;89408;89409;89410;89411;89412;89413;89414;89415;89416;89417;89418 91062;91063;91064;91065;91066;91067;91068;91069;91070;91071;91072;91073;91074;91075;91076;91077;91078;91079;91080;91081;91082;91083;91084;91085;91086 91075 25 KFDVNTSAVQVLIEHIGNLDR AISNELFEEAFAIFRKFDVNTSAVQVLIEH SAVQVLIEHIGNLDRAYEFAERCNEPAVWS R K F D R A 1 1 2 2 0 1 1 1 1 2 2 1 0 1 0 1 1 0 0 3 0 0 21 1 2367.2547 A0A087WVQ6;Q00610 A0A087WVQ6 1078 1098 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 4.3893E-33 120.23 By MS/MS 5 1.1613 1.1004 8.3615 5 Median NaN NaN NaN 0 0 Median 1.1613 1.1004 8.3615 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106390000 45213000 61176000 0 0 0 106390000 45213000 61176000 0 0 0 0 0 0 0 0 0 0 0 0 17195 44 17928 89419;89420;89421;89422;89423 91087;91088;91089;91090;91091;91092 91088 5 KFEEEGNPYYSSAR FSSADEAALKEPIIKKFEEEGNPYYSSARV KKFEEEGNPYYSSARVWDDGIIDPADTRLV K K F A R V 1 1 1 0 0 0 3 1 0 0 0 1 0 1 1 2 0 0 2 0 0 0 14 1 1675.7478 Q9HCC0 Q9HCC0 512 525 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes yes 2 0.0013842 53.569 By MS/MS 1 0.51295 0.51502 NaN 1 Median 0.51295 0.51502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6713200 4130100 2583100 6713200 4130100 2583100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17196 4027 17929 89424 91093 91093 1 KFEEETVK ETGKKDQSKQKESQRKFEEETVKSKVTVDT KQKESQRKFEEETVKSKVTVDTGVIPASEE R K F V K S 0 0 0 0 0 0 3 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 8 1 1008.5128 A0A087WUT6;O60841 A0A087WUT6 275 282 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.022169 50.04 By matching By MS/MS By matching By matching 1 1 1 2 1.0807 1.1532 8.8715 5 Median 1.0807 1.1618 NaN 1 0 Median 1.0302 0.96302 NaN 1 0 Median 1.0254 1.1703 NaN 1 0 Median 1.1532 1.0869 8.3703 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4685800 2236700 2449100 126050 63420 62627 2355400 1098700 1256700 1021500 543980 477470 1182900 530600 652270 0 0 0 0 0 0 17197 35 17930 89425;89426;89427;89428;89429 91094;91095 91095 2 KFEEFQTDMAAHEER EELGQDLEHVEVLQKKFEEFQTDMAAHEER KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ K K F E R V 2 1 0 1 0 1 4 0 1 0 0 1 1 2 0 0 1 0 0 0 0 0 15 1 1866.8207 A0A0D9SF54;Q13813 Q13813 190 204 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3;4 7.2299E-47 221.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 5 8 1 1.1182 1.0905 27.099 24 Median 1.2444 1.2658 14.342 4 0 Median 1.3242 1.2391 33.123 6 0 Median 0.8371 1.0033 25.213 5 0 Median 1.0912 1.039 13.889 8 0 Median NaN NaN NaN 0 0 Median 1.0253 0.89288 NaN 1 0 Median 335520000 155600000 179920000 20587000 8398900 12188000 157170000 66393000 90779000 112290000 59250000 53043000 43656000 20564000 23092000 0 0 0 1815500 998340 817130 17198 264;2838 17931;17932 89430;89431;89432;89433;89434;89435;89436;89437;89438;89439;89440;89441;89442;89443;89444;89445;89446;89447;89448;89449;89450;89451;89452;89453 91096;91097;91098;91099;91100;91101;91102;91103;91104;91105;91106;91107;91108;91109;91110;91111;91112;91113;91114;91115;91116;91117;91118;91119;91120 91102 124 23 KFEEFQTDMAAHEERVNEVNQFAAK EELGQDLEHVEVLQKKFEEFQTDMAAHEER AHEERVNEVNQFAAKLIQEQHPEEELIKTK K K F A K L 4 1 2 1 0 2 5 0 1 0 0 2 1 3 0 0 1 0 0 2 0 0 25 2 2967.3821 A0A0D9SF54;Q13813 Q13813 190 214 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 4;5 2.2378E-21 94.019 By MS/MS By matching By MS/MS 2 1 4 0.88669 1.1461 27.551 7 Median 1.1167 1.1977 19.14 2 0 Median 1.3361 1.4235 NaN 1 0 Median 0.84266 1.1133 30.467 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130260000 68528000 61736000 30111000 12047000 18064000 1681600 527780 1153900 98471000 55953000 42518000 0 0 0 0 0 0 0 0 0 17199 264;2838 17933;17934 89454;89455;89456;89457;89458;89459;89460 91121;91122;91123;91124;91125;91126 91122 124 6 KFEEIPIAHIK PPIPGEESSLRWAGKKFEEIPIAHIKASHN WAGKKFEEIPIAHIKASHNNTQIQVVSASN K K F I K A 1 0 0 0 0 0 2 0 1 3 0 2 0 1 1 0 0 0 0 0 0 0 11 1 1323.7551 P82912;H0YL99 P82912 79 89 MRPS11 28S ribosomal protein S11, mitochondrial yes no 3 0.0079414 30.331 By matching By MS/MS By matching By MS/MS 1 2 1 1 1.0825 0.9572 34.004 5 Median 0.69275 0.69197 NaN 1 0 Median 1.4231 1.2707 40.069 2 0 Median 0.79007 0.79767 NaN 1 0 Median 1.1575 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16576000 8689500 7886000 9939000 5669000 4269900 3753700 1671200 2082500 2094900 1004300 1090500 788080 345000 443080 0 0 0 0 0 0 17200 2655 17935 89461;89462;89463;89464;89465 91127;91128;91129 91129 3 KFEEMNAELEENKELAQNR AGSSLYGGTITINARKFEEMNAELEENKEL MNAELEENKELAQNRLCELEKLRQDFEEVT R K F N R L 2 1 3 0 0 1 6 0 0 0 2 2 1 1 0 0 0 0 0 0 0 0 19 2 2321.0958 Q5VTR2 Q5VTR2 324 342 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 1.8193E-10 95.414 By matching By MS/MS By matching 1 1 1 1.226 1.397 8.2602 3 Plateau 1.1794 1.3406 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.226 1.397 NaN 1 0 Median 1.0454 1.1914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26625000 12743000 13881000 3603400 1796000 1807400 0 0 0 20351000 9763100 10588000 2670600 1184200 1486400 0 0 0 0 0 0 17201 3112 17936 89466;89467;89468 91130;91131 91131 2 KFESEILEAISQNSVVIIR DLQAILQERELLPVKKFESEILEAISQNSV EILEAISQNSVVIIRGATGCGKTTQVPQFI K K F I R G 1 1 1 0 0 1 3 0 0 4 1 1 0 1 0 3 0 0 0 2 0 0 19 1 2174.1947 Q08211 Q08211 392 410 DHX9 ATP-dependent RNA helicase A yes yes 3 0.020631 14.77 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.2127 1.3677 22.565 4 Median 1.0277 1.0606 NaN 1 0 Median 1.7968 1.8011 NaN 1 0 Median 1.293 1.4798 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1373 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median 3327400 1490300 1837100 279550 134410 145130 1286700 493920 792750 764060 361960 402100 0 0 0 997100 499990 497110 0 0 0 17202 2736 17937 89469;89470;89471;89472 91132;91133 91132 2 KFFDANYDGK KGKFQDNFEFVQWFKKFFDANYDGKDYDPV VQWFKKFFDANYDGKDYDPVAARQGQETAV K K F G K D 1 0 1 2 0 0 0 1 0 0 0 2 0 2 0 0 0 0 1 0 0 0 10 1 1203.556 Q15691;Q9UPY8;C9JB30 Q15691 113 122 MAPRE1;MAPRE3 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 3 no no 2 0.0053371 64.297 By MS/MS By MS/MS 1 1 1.2248 1.174 0.28965 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1243 1.1764 NaN 1 1 Median 1.3343 1.1716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10575000 4844200 5730700 0 0 0 0 0 0 6012100 2749200 3263000 4562800 2095000 2467700 0 0 0 0 0 0 17203 2963;686 17938 89473;89474 91134;91135 91134 2 KFFDANYDGKDYDPVAAR KGKFQDNFEFVQWFKKFFDANYDGKDYDPV DANYDGKDYDPVAARQGQETAVAPSLVAPA K K F A R Q 3 1 1 4 0 0 0 1 0 0 0 2 0 2 1 0 0 0 2 1 0 0 18 2 2090.9698 Q15691 Q15691 113 130 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3 1.8415E-06 61.648 By MS/MS By MS/MS By MS/MS 1 1 1 0.89872 0.9018 2.1586 3 Median 0.89872 0.93094 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7963 0.9018 NaN 1 0 Median 0.92011 0.89337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13923000 7412400 6510900 4104400 1984200 2120200 0 0 0 8204100 4690600 3513500 1614800 737600 877170 0 0 0 0 0 0 17204 2963 17939 89475;89476;89477 91136;91137;91138 91137 3 KFFLSHPAYR IEGKKDIRAALAAERKFFLSHPAYRHMADR LAAERKFFLSHPAYRHMADRMGTPHLQKTL R K F Y R H 1 1 0 0 0 0 0 0 1 0 1 1 0 2 1 1 0 0 1 0 0 0 10 1 1264.6717 P50570 P50570 257 266 DNM2 Dynamin-2 no no 3 8.3152E-05 86.898 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.96368 0.9868 11.368 6 Median NaN NaN NaN 0 0 Median 1.0871 1.0898 NaN 1 0 Median 0.88227 0.99896 NaN 1 0 Median 0.94184 0.90135 16.315 2 0 Median 0.77987 0.85771 NaN 1 1 Median 1.122 0.97479 NaN 1 1 Median 39678000 20402000 19276000 0 0 0 1261800 634690 627100 20360000 10674000 9685800 7749800 3846900 3902900 7861000 4103800 3757200 2445000 1142000 1303000 17205 2417 17940 89478;89479;89480;89481;89482;89483 91139;91140;91141;91142;91143;91144;91145;91146;91147;91148 91145 10 KFFVGGNWK TDLQRLGSSAMAPSRKFFVGGNWKMNGRKQ AMAPSRKFFVGGNWKMNGRKQSLGELIGTL R K F W K M 0 0 1 0 0 0 0 2 0 0 0 2 0 2 0 0 0 1 0 1 0 0 9 1 1081.5709 P60174 P60174 43 51 TPI1 Triosephosphate isomerase yes yes 2 4.874E-18 157.21 By MS/MS 2 1.4114 1.284 NaN 1 Median NaN NaN NaN 0 0 Median 1.4114 1.284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54703000 19015000 35687000 0 0 0 54703000 19015000 35687000 0 0 0 0 0 0 0 0 0 0 0 0 17206 2523 17941 89484;89485 91149;91150 91149 2 KFGDPVVQSDMK NPQNTVFDAKRLIGRKFGDPVVQSDMKHWP IGRKFGDPVVQSDMKHWPFQVINDGDKPKV R K F M K H 0 0 0 2 0 1 0 1 0 0 0 2 1 1 1 1 0 0 0 2 0 0 12 1 1349.6649 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 78 89 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 6.1274E-06 148.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 3 3 1.1113 1.0503 20.252 16 Median 1.1532 1.0651 4.1444 3 1 Median 1.0647 0.98535 22.521 5 0 Median 1.1185 1.2244 5.4971 2 0 Median 1.1155 1.03 1.5807 3 0 Median 0.96152 1.0764 32.611 3 1 Median NaN NaN NaN 0 0 Median 684730000 310550000 374180000 158300000 71955000 86346000 367630000 171080000 196550000 99081000 41837000 57244000 34779000 15604000 19175000 24948000 10079000 14870000 0 0 0 17207 278 17942;17943 89486;89487;89488;89489;89490;89491;89492;89493;89494;89495;89496;89497;89498;89499;89500;89501 91151;91152;91153;91154;91155;91156;91157;91158;91159;91160;91161;91162;91163;91164;91165;91166;91167;91168;91169;91170;91171;91172 91159 135 22 KFGEAIGMGFPVK KARQLREQVNDLFSRKFGEAIGMGFPVKVP SRKFGEAIGMGFPVKVPYRKITINPGCVVV R K F V K V 1 0 0 0 0 0 1 3 0 1 0 2 1 2 1 0 0 0 0 1 0 0 13 1 1379.7271 P78347;A0A494C1K3 P78347 879 891 GTF2I General transcription factor II-I yes no 3 0.003531 33.685 By MS/MS 1 0.69473 0.7956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69473 0.7956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4014800 2564300 1450500 0 0 0 0 0 0 4014800 2564300 1450500 0 0 0 0 0 0 0 0 0 17208 2642 17944 89502 91173;91174 91173 2 KFGFEIIETKK LHVQISNESAIDFYRKFGFEIIETKKNYYK DFYRKFGFEIIETKKNYYKRIEPADAHVLQ R K F K K N 0 0 0 0 0 0 2 1 0 2 0 3 0 2 0 0 1 0 0 0 0 0 11 2 1338.7547 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5 C9J5D1 86 96 NAA50 N-alpha-acetyltransferase 50 yes no 3 0.0093875 31.989 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.358 1.4613 29.756 4 Median 1.579 1.71 NaN 1 0 Median 1.7958 1.6205 NaN 1 0 Median 1.1679 1.3178 NaN 1 0 Median 0.96516 0.88746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11250000 4603300 6647000 6892900 2885600 4007300 572340 157560 414780 2454600 981680 1473000 1330400 578450 751960 0 0 0 0 0 0 17209 677 17945 89503;89504;89505;89506 91175;91176;91177;91178;91179 91175 5 KFGLTPEQFGENLR MYTICQSAGLDGLAKKFGLTPEQFGENLRD KKFGLTPEQFGENLRDSYQRHETEQFPAEP K K F L R D 0 1 1 0 0 1 2 2 0 0 2 1 0 2 1 0 1 0 0 0 0 0 14 1 1634.8417 Q7KZ85 Q7KZ85 538 551 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.0011414 52.265 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17210 3213 17946 89507;89508 91180;91181 91181 2 KFGNPGER RGGFGARGGGGLPPKKFGNPGERLRKKKWD GGGLPPKKFGNPGERLRKKKWDLSELPKFE K K F E R L 0 1 1 0 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 8 1 903.45626 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 109 116 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.05232 37.558 By matching By MS/MS 1 1 0.79543 0.82555 2.475 2 Median NaN NaN NaN 0 0 Median 0.80374 0.81123 NaN 1 0 Median 0.78721 0.84012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 406580 215360 191220 0 0 0 66444 32164 34279 340130 183200 156940 0 0 0 0 0 0 0 0 0 17211 343 17947 89509;89510 91182 91182 1 KFGQYAGHVVPTILEK LAAKCLTGLAVGLRKKFGQYAGHVVPTILE FGQYAGHVVPTILEKFKEKKPQVVQALQEA K K F E K F 1 0 0 0 0 1 1 2 1 1 1 2 0 1 1 0 1 0 1 2 0 0 16 1 1785.9778 Q14008 Q14008 354 369 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00019073 42.095 By MS/MS By matching 1 1 0.82763 0.86022 9.2166 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69694 0.80594 NaN 1 0 Median 0.98282 0.91815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9562300 5223000 4339300 0 0 0 0 0 0 8505500 4697500 3808000 1056800 525520 531240 0 0 0 0 0 0 17212 2850 17948 89511;89512 91183;91184 91183 2 KFGTINIVHPK VVTGAWSAKAAEEAKKFGTINIVHPKLGSY EEAKKFGTINIVHPKLGSYTKIPDPSTWNL K K F P K L 0 0 1 0 0 0 0 1 1 2 0 2 0 1 1 0 1 0 0 1 0 0 11 1 1252.7292 Q9Y617 Q9Y617 117 127 PSAT1 Phosphoserine aminotransferase yes yes 3 7.5213E-05 72.2 By MS/MS By MS/MS By matching 1 1 1 0.95591 0.89059 1.5539 3 Median 0.95591 0.89059 NaN 1 0 Median 0.99587 0.90231 NaN 1 0 Median 0.82896 0.87481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9884700 4969300 4915400 7040100 3500000 3540100 2212900 1140800 1072100 631690 328550 303150 0 0 0 0 0 0 0 0 0 17213 4476 17949 89513;89514;89515 91185;91186;91187 91187 3 KFGVFNYSPFR SAMQEMEVYVENIRRKFGVFNYSPFRTPYT NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP R K F F R T 0 1 1 0 0 0 0 1 0 0 0 1 0 3 1 1 0 0 1 1 0 0 11 1 1360.6928 Q9ULU4 Q9ULU4 356 366 ZMYND8 Protein kinase C-binding protein 1 no no 3 0.019762 23.749 By MS/MS By matching 1 1 0.74709 0.84783 30.005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91833 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60779 0.68575 NaN 1 0 Median NaN NaN NaN 0 0 Median 2208600 1173700 1034900 0 0 0 0 0 0 1583800 816940 766860 0 0 0 624800 356730 268080 0 0 0 17214 4328 17950 89516;89517 91188 91188 1 KFGVVLDEIKPSSAPELQAVR VERDVFLYRAYLAQRKFGVVLDEIKPSSAP DEIKPSSAPELQAVRMFADYLAHESRRDSI R K F V R M 2 1 0 1 0 1 2 1 0 1 2 2 0 1 2 2 0 0 0 3 0 0 21 2 2282.2634 O14579;M0QXB4;M0R061 O14579 65 85 COPE Coatomer subunit epsilon yes no 3 9.3089E-12 65.454 By MS/MS By matching By matching 1 1 1 0.63992 0.66762 17.652 3 Median 0.61978 0.64199 NaN 1 0 Median 0.63992 0.66762 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91369 0.88714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10635000 5859100 4776000 8838200 4860200 3978000 1114000 650990 463010 0 0 0 682820 347890 334930 0 0 0 0 0 0 17215 1409 17951 89518;89519;89520 91189 91189 1 KFGYVDFESAEDLEK KNDLAVVDVRIGMTRKFGYVDFESAEDLEK KFGYVDFESAEDLEKALELTGLKVFGNEIK R K F E K A 1 0 0 2 0 0 3 1 0 0 1 2 0 2 0 1 0 0 1 1 0 0 15 1 1775.8254 P19338 P19338 348 362 NCL Nucleolin yes yes 2;3 4.5694E-14 126.95 By MS/MS By matching By MS/MS By matching By MS/MS By matching 8 5 7 8 5 2 1.1493 1.0981 14.844 35 Median 0.96052 0.99331 13.081 8 2 Median 1.1692 1.0454 10.929 5 0 Median 1.1493 1.2646 8.9955 7 0 Median 1.2813 1.1796 15.564 8 0 Median 1.08 1.2104 11.983 5 0 Median 1.1516 1.0342 7.3334 2 0 Median 238250000 112060000 126190000 117670000 56953000 60721000 33490000 15779000 17712000 48980000 22272000 26708000 7416000 3092600 4323400 29211000 13317000 15894000 1479900 648950 830900 17216 2063 17952 89521;89522;89523;89524;89525;89526;89527;89528;89529;89530;89531;89532;89533;89534;89535;89536;89537;89538;89539;89540;89541;89542;89543;89544;89545;89546;89547;89548;89549;89550;89551;89552;89553;89554;89555 91190;91191;91192;91193;91194;91195;91196;91197;91198;91199;91200 91192 11 KFHEAQLSEK PENGNPQQMQQELQRKFHEAQLSEKISLQA QELQRKFHEAQLSEKISLQAIQQLVRKSYQ R K F E K I 1 0 0 0 0 1 2 0 1 0 1 2 0 1 0 1 0 0 0 0 0 0 10 1 1215.6248 O75694;E9PF10 O75694 766 775 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.019078 24.855 By MS/MS By MS/MS 1 1 1.2938 1.2198 6.9325 2 Median NaN NaN NaN 0 0 Median 1.2446 1.1615 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3449 1.2811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3774400 1648700 2125700 0 0 0 3182900 1398100 1784800 0 0 0 591570 250610 340960 0 0 0 0 0 0 17217 1692 17953 89556;89557 91201;91202 91202 2 KFIAYQFTDTPLQIK CKIGEERATAISLMRKFIAYQFTDTPLQIK KFIAYQFTDTPLQIKSVVAPEHVKGYIYVE R K F I K S 1 0 0 1 0 2 0 0 0 2 1 2 0 2 1 0 2 0 1 0 0 0 15 1 1811.9822 O00267 O00267 199 213 SUPT5H Transcription elongation factor SPT5 yes yes 3 0.012311 23.008 By MS/MS By matching 2 1 0.97709 0.95452 27.056 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8288 0.94858 38.26 2 0 Median 0.97709 0.95452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5622700 3203100 2419600 0 0 0 0 0 0 5447200 3110600 2336600 175560 92564 82994 0 0 0 0 0 0 17218 1452 17954 89558;89559;89560 91203 91203 1 KFIQTFGK ALGDPKAPGLGAFRRKFIQTFGKEFDKHFG GLGAFRRKFIQTFGKEFDKHFGKGGSKLLR R K F G K E 0 0 0 0 0 1 0 1 0 1 0 2 0 2 0 0 1 0 0 0 0 0 8 1 967.5491 P78527 P78527 3631 3638 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0050387 89.698 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 2 3 1.3992 1.3188 15.821 14 Median 1.1055 1.2044 NaN 1 0 Median 1.4783 1.4246 7.4977 2 0 Median 0.95894 1.0844 4.8487 3 1 Median 1.4299 1.3253 5.5181 3 0 Plateau 0.87958 0.96604 7.3507 2 0 Median 1.5043 1.3562 8.02 3 1 Median 114350000 52745000 61601000 11106000 5524300 5581300 25662000 10649000 15013000 43857000 21852000 22005000 10301000 4332100 5969000 12776000 6496000 6280000 10644000 3891600 6752400 17219 2647 17955 89561;89562;89563;89564;89565;89566;89567;89568;89569;89570;89571;89572;89573;89574 91204;91205;91206;91207;91208;91209;91210;91211;91212;91213;91214;91215;91216;91217;91218;91219 91212 16 KFIQTFGKEFDK ALGDPKAPGLGAFRRKFIQTFGKEFDKHFG FRRKFIQTFGKEFDKHFGKGGSKLLRMKLS R K F D K H 0 0 0 1 0 1 1 1 0 1 0 3 0 3 0 0 1 0 0 0 0 0 12 2 1486.782 P78527 P78527 3631 3642 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0008981 47.915 By MS/MS 1 0.85634 1.0632 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85634 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4990800 2598300 2392500 0 0 0 0 0 0 4990800 2598300 2392500 0 0 0 0 0 0 0 0 0 17220 2647 17956 89575 91220 91220 1 KFLALLR LIEMSLQMDPEYRVRKFLALLREEGASPLD MDPEYRVRKFLALLREEGASPLDFD_____ R K F L R E 1 1 0 0 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 1 859.56436 I3L0N3;P46459;K7EQD6 I3L0N3 723 729 NSF Vesicle-fusing ATPase yes no 2 0.038057 52.683 By MS/MS By matching By matching 1 1 1 1.7226 1.7238 27.568 3 Median 1.3239 1.3573 NaN 1 0 Median 1.7226 1.7238 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4047 2.3521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5881600 2330300 3551200 3945900 1472300 2473500 1812400 826790 985570 0 0 0 123340 31185 92151 0 0 0 0 0 0 17221 1272 17957 89576;89577;89578 91221 91221 1 KFLDGIYVSEK ALIQQATTVKNKDIRKFLDGIYVSEKGT__ KDIRKFLDGIYVSEKGT_____________ R K F E K G 0 0 0 1 0 0 1 1 0 1 1 2 0 1 0 1 0 0 1 1 0 0 11 1 1297.6918 D6RAN4;P32969;A0A2R8Y5Y7;H0Y9R4;H0Y9V9 D6RAN4 169 179 RPL9 60S ribosomal protein L9 yes no 2;3 4.4632E-05 94.465 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 2 1 1.1221 1.094 16.358 11 Median 1.0513 1.0699 5.7454 3 1 Median 1.1874 1.0855 NaN 1 0 Median 1.2358 1.2295 2.3312 2 0 Median 1.0174 0.91607 40.047 2 0 Median 1.0502 1.1231 9.0194 2 0 Median 1.2605 1.094 NaN 1 0 Median 220000000 101340000 118660000 138410000 62980000 75432000 4491900 2073900 2417900 44967000 21587000 23381000 8482700 4077400 4405300 21680000 9761100 11919000 1965700 856650 1109000 17222 812 17958 89579;89580;89581;89582;89583;89584;89585;89586;89587;89588;89589 91222;91223;91224;91225;91226;91227;91228;91229;91230;91231;91232;91233;91234 91225 13 KFLDTSHYSTAGSSSVR ASVPLIDVTNLPTPRKFLDTSHYSTAGSSS LDTSHYSTAGSSSVREINLQDIKEDLELDP R K F V R E 1 1 0 1 0 0 0 1 1 0 1 1 0 1 0 5 2 0 1 1 0 0 17 1 1841.8908 Q96A65 Q96A65 240 256 EXOC4 Exocyst complex component 4 yes yes 3 1.7425E-05 50.053 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.052 1.0751 7.6765 4 Median 0.98593 1.0257 NaN 1 0 Median 1.1226 1.0567 NaN 1 0 Median 0.96381 1.0939 NaN 1 0 Median 1.2722 1.2226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15609000 7396300 8212500 3997400 1865500 2131900 3643800 1886600 1757300 5704800 2646000 3058800 2262800 998300 1264500 0 0 0 0 0 0 17223 3595 17959 89590;89591;89592;89593 91235;91236;91237 91236 3 KFLEHLSGAGK ______________________________ GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN R K F G K A 1 0 0 0 0 0 1 2 1 0 2 2 0 1 0 1 0 0 0 0 0 0 11 1 1185.6506 Q01813 Q01813 15 25 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2;3 0.00027159 76.143 By MS/MS By MS/MS 1 2 1.088 1.0894 0.37757 2 Median 1.0488 1.0865 NaN 1 0 Median 1.1287 1.0923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8171900 2517900 5654000 1398900 750290 648610 6773000 1767600 5005400 0 0 0 0 0 0 0 0 0 0 0 0 17224 2692 17960 89594;89595;89596 91238;91239;91240;91241 91239 4 KFLESTDSFNNELKR AELLQIEERHQEKKRKFLESTDSFNNELKR KFLESTDSFNNELKRLCGLKVEVDMEKIAA R K F K R L 0 1 2 1 0 0 2 0 0 0 2 2 0 2 0 2 1 0 0 0 0 0 15 2 1826.9163 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61 Q969G3 258 272 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 4.4296E-10 105.46 By MS/MS By MS/MS 1 1 1.1383 1.265 33.325 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86139 0.9994 NaN 1 0 Median 1.5043 1.6011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21260000 10398000 10862000 0 0 0 0 0 0 17839000 9173900 8664900 3421200 1224600 2196600 0 0 0 0 0 0 17225 389 17961 89597;89598 91242;91243;91244;91245 91242 4 KFLPGMAIGYSSSK VVQCEIDEDVIQVSKKFLPGMAIGYSSSKL KKFLPGMAIGYSSSKLTLHVGDGFEFMKQN K K F S K L 1 0 0 0 0 0 0 2 0 1 1 2 1 1 1 3 0 0 1 0 0 0 14 1 1484.7697 P19623;K7EQ47 P19623 135 148 SRM Spermidine synthase yes no 2;3 0.00062603 42.475 By MS/MS By matching By matching 2 1 1 1.0463 1.1051 12.129 4 Linear 1.1199 1.0912 10.407 2 0 Median NaN NaN NaN 0 0 Median 0.87166 0.93336 NaN 1 0 Median 1.0524 0.8909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16447000 7396200 9050300 14417000 6531600 7885800 0 0 0 1508300 590680 917660 520810 273930 246870 0 0 0 0 0 0 17226 2068 17962 89599;89600;89601;89602 91246;91247;91248;91249 91247 4 KFLPLFDR ______________________________ MAGQAFRKFLPLFDRVLVERSAAETVTKGG R K F D R V 0 1 0 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 8 1 1034.5913 S4R3N1;P61604;B8ZZL8 P61604 8 15 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2 0.0049385 93.992 By MS/MS By MS/MS By MS/MS 1 1 1 1.0025 1.0394 7.8923 3 Median 0.98379 0.9647 NaN 1 0 Median 1.2794 1.1296 NaN 1 0 Median 1.0025 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108310000 51514000 56794000 74926000 36178000 38748000 20793000 9310100 11483000 12589000 6025500 6563100 0 0 0 0 0 0 0 0 0 17227 2560;4561 17963 89603;89604;89605 91250;91251;91252;91253;91254;91255;91256;91257;91258 91253 9 KFLSDPQVHTVLVER LEAALEEKSALEQMRKFLSDPQVHTVLVER KFLSDPQVHTVLVERSTLKEDVGDEGEEEK R K F E R S 0 1 0 1 0 1 1 0 1 0 2 1 0 1 1 1 1 0 0 3 0 0 15 1 1766.9679 Q14204 Q14204 67 81 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 3.2258E-10 105.46 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 0.80993 0.97089 51.148 7 Median 0.80637 0.84449 30.314 2 0 Median 1.1447 1.0558 NaN 1 0 Median 0.80993 0.97089 7.205 3 0 Median 0.27747 0.25845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 168510000 89675000 78834000 70959000 36254000 34705000 20664000 9282100 11382000 65770000 35063000 30707000 11115000 9076000 2039200 0 0 0 0 0 0 17228 2865 17964 89606;89607;89608;89609;89610;89611;89612 91259;91260;91261;91262;91263;91264;91265 91260 6 KFMNPFNMPNLYQK LKEGLQNMEARLAERKFMNPFNMPNLYQKL RKFMNPFNMPNLYQKLESDPRTRTLLSDPT R K F Q K L 0 0 3 0 0 1 0 0 0 0 1 2 2 2 2 0 0 0 1 0 0 0 14 1 1770.8586 P31948;F5H783 P31948 123 136 STIP1 Stress-induced-phosphoprotein 1 yes no 3 0.01082 24.72 By MS/MS By matching By matching By matching 1 1 2 1 0.85969 0.80239 11.486 5 Median 0.85969 0.80239 NaN 1 0 Median 0.80018 0.74729 NaN 1 0 Median 0.83839 0.91938 13.437 2 0 Median 0.86213 0.79605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37213000 20597000 16616000 24231000 13434000 10797000 9554300 5280600 4273700 3155400 1725200 1430200 272540 156830 115710 0 0 0 0 0 0 17229 2212 17965 89613;89614;89615;89616;89617 91266;91267 91267 2 KFMQDPMEIFVDDETK MFSATLSKEIRPVCRKFMQDPMEIFVDDET FMQDPMEIFVDDETKLTLHGLQQYYVKLKD R K F T K L 0 0 0 3 0 1 2 0 0 1 0 2 2 2 1 0 1 0 0 1 0 0 16 1 1971.8958 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;H0YCC6 Q13838 241 256 DDX39B Spliceosome RNA helicase DDX39B yes no 3 8.6804E-07 80.609 By MS/MS By matching By matching 5 2 1 0.9437 0.96137 13.049 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90734 0.9477 11.643 5 1 Median 1.1281 1.0715 17.537 2 0 Median 0.95394 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median 50030000 25367000 24664000 0 0 0 0 0 0 45624000 23493000 22132000 3972400 1652300 2320100 433640 221680 211950 0 0 0 17230 2842 17966;17967;17968 89618;89619;89620;89621;89622;89623;89624;89625 91268;91269;91270;91271;91272;91273;91274;91275 91275 1523;1524 8 KFMQDPMEVFVDDETK MFSATLSKDIRPVCRKFMQDPMEVFVDDET FMQDPMEVFVDDETKLTLHGLQQYYVKLKD R K F T K L 0 0 0 3 0 1 2 0 0 0 0 2 2 2 1 0 1 0 0 2 0 0 16 1 1957.8802 O00148 O00148 240 255 DDX39A ATP-dependent RNA helicase DDX39A yes yes 3 0.0052349 25.558 By MS/MS 1 0.84911 0.89317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84911 0.89317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3416600 1812100 1604500 0 0 0 0 0 0 3416600 1812100 1604500 0 0 0 0 0 0 0 0 0 17231 1441 17969 89626 91276 91276 1 KFNALFAQGNYSEAAK AVRNNLAGAEELFARKFNALFAQGNYSEAA FNALFAQGNYSEAAKVAANAPKGILRTPDT R K F A K V 4 0 2 0 0 1 1 1 0 0 1 2 0 2 0 1 0 0 1 0 0 0 16 1 1757.8737 A0A087WVQ6;Q00610 A0A087WVQ6 371 386 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 1.4994E-72 248.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 7 3 2 1.2236 1.1721 24.629 24 Median 1.2437 1.3155 8.8229 6 1 Median 1.307 1.2423 19.088 6 0 Median 0.90061 1.0477 11.439 7 2 Median 1.4854 1.406 52.496 3 0 Median 1.1137 1.2037 8.8587 2 0 Median NaN NaN NaN 0 0 Median 783700000 347380000 436320000 489980000 212250000 277730000 113600000 47678000 65921000 139800000 69139000 70662000 14526000 5910700 8614800 25798000 12408000 13390000 0 0 0 17232 44 17970 89627;89628;89629;89630;89631;89632;89633;89634;89635;89636;89637;89638;89639;89640;89641;89642;89643;89644;89645;89646;89647;89648;89649;89650 91277;91278;91279;91280;91281;91282;91283;91284;91285;91286;91287;91288;91289;91290;91291;91292;91293;91294;91295;91296;91297;91298;91299;91300;91301;91302;91303;91304;91305;91306;91307;91308;91309;91310;91311;91312;91313;91314 91286 38 KFNQVLGDDEKLR AKNLPDPGKAQDFVKKFNQVLGDDEKLRSQ VKKFNQVLGDDEKLRSQLELLISPTCSCKQ K K F L R S 0 1 1 2 0 1 1 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 2 1560.826 Q29RF7 Q29RF7 558 570 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 9.2312E-06 148.78 By MS/MS By MS/MS By MS/MS 1 1 1 1.0978 1.1263 16.826 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85252 0.97143 NaN 1 0 Median 1.1924 1.359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0978 1.1263 NaN 1 1 Median 37390000 18013000 19377000 0 0 0 0 0 0 32489000 15741000 16748000 3682400 1733400 1948900 0 0 0 1218200 538570 679590 17233 3003 17971 89651;89652;89653 91315;91316;91317;91318;91319 91315 5 KFPAVETR LIDKNLESAVKFIVRKFPAVETRNNNQQLA AVKFIVRKFPAVETRNNNQQLAQLQKEKSE R K F T R N 1 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 8 1 946.52362 Q9Y2A7 Q9Y2A7 63 70 NCKAP1 Nck-associated protein 1 yes yes 2 0.0058914 83.265 By MS/MS By MS/MS By matching 2 1 1 0.97931 1.0415 16.126 4 Median NaN NaN NaN 0 0 Median 0.91474 0.9317 24.736 2 0 Median 0.95591 1.0916 NaN 1 0 Median 1.0339 0.99364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9927900 5344600 4583400 0 0 0 6836400 3802200 3034200 1403500 654340 749150 1688000 888000 800030 0 0 0 0 0 0 17234 4383 17972 89654;89655;89656;89657 91320;91321;91322;91323 91322 4 KFPFCDGAHTK DLGDKAVYCRCWRSKKFPFCDGAHTKHNEE WRSKKFPFCDGAHTKHNEETGDNVGPLIIK K K F T K H 1 0 0 1 1 0 0 1 1 0 0 2 0 2 1 0 1 0 0 0 0 0 11 1 1306.6128 Q9NZ45 Q9NZ45 79 89 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 3 0.00018163 63.091 By matching By MS/MS 1 1 1.1412 1.0282 38.787 2 Median 0.8346 0.78158 NaN 1 0 Median 1.5604 1.3527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189200 2700200 3489100 669800 355220 314590 5519400 2344900 3174500 0 0 0 0 0 0 0 0 0 0 0 0 17235 4184 17973 89658;89659 91324 91324 1 KFPGSAALVGAVR RQAGPAPAAATAASKKFPGSAALVGAVRKP SKKFPGSAALVGAVRKPVVPSVPMASPAPG K K F V R K 3 1 0 0 0 0 0 2 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 1 1271.735 Q9BTC0 Q9BTC0 627 639 DIDO1 Death-inducer obliterator 1 yes yes 2;3 0.00025057 76.228 By matching By MS/MS By matching 1 6 2 0.72114 0.86454 31.869 9 Median NaN NaN NaN 0 0 Median 1.9608 1.9041 NaN 1 0 Median 0.71011 0.83682 12.771 6 0 Median 1.1617 1.1189 10.592 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43565000 24720000 18845000 0 0 0 401560 163120 238440 42205000 24158000 18047000 959090 399200 559890 0 0 0 0 0 0 17236 3824 17974 89660;89661;89662;89663;89664;89665;89666;89667;89668 91325;91326;91327;91328;91329;91330 91328 6 KFPVTENSK NPLDTVLKVLEILGKKFPVTENSKGYKLLP LEILGKKFPVTENSKGYKLLPPYLRVIQGD K K F S K G 0 0 1 0 0 0 1 0 0 0 0 2 0 1 1 1 1 0 0 1 0 0 9 1 1048.5553 P43490;A0A0C4DFS8 P43490 331 339 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.0069306 59.35 By matching By MS/MS 2 1 1.1711 1.1032 10.609 3 Median 1.0681 1.0385 14.169 2 0 Median 1.1711 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2229300 1073800 1155500 831370 430490 400880 1397900 643260 754630 0 0 0 0 0 0 0 0 0 0 0 0 17237 2326 17975 89669;89670;89671 91331 91331 1 KFQDLLSEENESTALPQVLAQPSTSR EALRHPWLQDEDMKRKFQDLLSEENESTAL STALPQVLAQPSTSRKRPREGEAEGAETTK R K F S R K 2 1 1 1 0 3 3 0 0 0 4 1 0 1 2 4 2 0 0 1 0 0 26 1 2887.4563 O96017;H0Y4V6;H0Y820 O96017 494 519 CHEK2 Serine/threonine-protein kinase Chk2 yes no 3 0.0031549 23.917 By MS/MS 1 0.51353 0.51572 NaN 1 Median 0.51353 0.51572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5983000 4582500 1400500 5983000 4582500 1400500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17238 1808 17976 89672 91332;91333 91332 2 KFQPLFGDFAAEKK RLPKEKVPRGSGKKRKFQPLFGDFAAEKKN RKFQPLFGDFAAEKKNQLELLRVMNSKKPQ R K F K K N 2 0 0 1 0 1 1 1 0 0 1 3 0 3 1 0 0 0 0 0 0 0 14 2 1624.8613 Q15050 Q15050 253 266 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 0.0099223 56.599 By MS/MS 2 0.97947 1.0669 5.8988 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97947 1.0669 5.8988 2 2 Median NaN NaN NaN 0 0 Median 24308000 12733000 11574000 0 0 0 0 0 0 0 0 0 0 0 0 24308000 12733000 11574000 0 0 0 17239 2920 17977 89673;89674 91334;91335 91334 2 KFSDAIQSKEEEIR DDRDRVIDEAKKWERKFSDAIQSKEEEIRL RKFSDAIQSKEEEIRLKEDNCSVLKDQLRQ R K F I R L 1 1 0 1 0 1 3 0 0 2 0 2 0 1 0 2 0 0 0 0 0 0 14 2 1678.8526 Q14789 Q14789 2214 2227 GOLGB1 Golgin subfamily B member 1 yes yes 3 1.712E-08 103.6 By MS/MS By MS/MS 1 1 1.1249 1.2112 14.838 2 Median 1.2361 1.3452 NaN 1 0 Median 1.0236 1.0906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24296000 11047000 13248000 13191000 5499700 7691600 11104000 5547500 5556700 0 0 0 0 0 0 0 0 0 0 0 0 17240 2900 17978 89675;89676 91336;91337;91338 91338 3 KFSGFSAKPNNSGEAPSSPTPK SPVKGASFVTSTNPRKFSGFSAKPNNSGEA KPNNSGEAPSSPTPKRSLSSSKCDPRHKDC R K F P K R 2 0 2 0 0 0 1 2 0 0 0 3 0 2 4 5 1 0 0 0 0 0 22 2 2234.0968 P49916;K7ERZ5;K7ENR9 P49916 225 246 LIG3 DNA ligase 3 yes no 4 0.028855 13.455 By MS/MS 1 1.1027 1.1293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1027 1.1293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1716000 759470 956540 0 0 0 0 0 0 0 0 0 1716000 759470 956540 0 0 0 0 0 0 17241 2406 17979 89677 91339 91339 1 KFSKEEPVSSGPEEAVGK DPEEAGHRSGSKKKRKFSKEEPVSSGPEEA KEEPVSSGPEEAVGKSSSKKKKKFHKASQE R K F G K S 1 0 0 0 0 0 4 2 0 0 0 3 0 1 2 3 0 0 0 2 0 0 18 2 1903.9527 O00567 O00567 561 578 NOP56 Nucleolar protein 56 yes yes 3 0.0011093 30.489 By matching By MS/MS By matching 1 2 1 0.59316 0.67103 9.3567 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59426 0.68704 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58996 0.65014 1.1369 2 0 Median 0.80883 0.79223 NaN 1 0 Median 30782000 17626000 13156000 0 0 0 0 0 0 4868500 2817000 2051500 0 0 0 23584000 13539000 10045000 2329400 1270100 1059300 17242 1472 17980 89678;89679;89680;89681 91340;91341;91342;91343 91343 4 KFSNQETSVEIGESVR VADRLGLELGKVVTKKFSNQETSVEIGESV FSNQETSVEIGESVRGEDVYIIQSGCGEIN K K F V R G 0 1 1 0 0 1 3 1 0 1 0 1 0 1 0 3 1 0 0 2 0 0 16 1 1808.8905 P11908;A6NMS2;D3YTJ7 P11908 34 49 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 3 0.030183 24.793 By MS/MS 1 1.4253 1.2951 NaN 1 Median NaN NaN NaN 0 0 Median 1.4253 1.2951 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1772600 780390 992190 0 0 0 1772600 780390 992190 0 0 0 0 0 0 0 0 0 0 0 0 17243 1972 17981 89682 91344 91344 1 KFTNKEWETIR PGRGSIPEFFHIMKRKFTNKEWETIRSFKD IMKRKFTNKEWETIRSFKDEWTQLDMFYRN R K F I R S 0 1 1 0 0 0 2 0 0 1 0 2 0 1 0 0 2 1 0 0 0 0 11 2 1450.7569 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 151 161 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 3 0.029611 36.847 By matching By MS/MS 1 1 1.0912 1.1343 4.1776 2 Median 1.1279 1.1683 NaN 1 0 Median 1.0556 1.1013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10689000 5321000 5368400 8088100 4021700 4066400 2601400 1299400 1302000 0 0 0 0 0 0 0 0 0 0 0 0 17244 4085 17982 89683;89684 91345 91345 0 KFTQVLEDDEKIR TRNLPDPGKAQDFMKKFTQVLEDDEKIRKQ MKKFTQVLEDDEKIRKQLEVLVSPTCSCKQ K K F I R K 0 1 0 2 0 1 2 0 0 1 1 2 0 1 0 0 1 0 0 1 0 0 13 2 1619.8519 Q9NTI5 Q9NTI5 548 560 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 9.7753E-05 77.894 By matching By MS/MS 1 1 0.4697 0.48334 150.37 2 Median NaN NaN NaN 0 0 Median 0.1796 0.16691 NaN 1 0 Median 1.2284 1.3997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14729000 9474200 5254900 0 0 0 7309400 6241400 1068000 7419700 3232700 4186900 0 0 0 0 0 0 0 0 0 17245 4107 17983 89685;89686 91346 91346 1 KFVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG R K F F K A 1 0 0 1 0 0 0 1 0 1 0 2 0 2 0 0 0 0 0 1 0 0 9 1 1023.5753 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;E9PK82;E9PQX2 P23396 10 18 RPS3 40S ribosomal protein S3 yes no 2 0.0019889 81.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1 1 1.1912 1.1957 15.556 12 Median 1.0967 1.1792 8.8868 3 0 Median 1.1616 1.0418 7.3654 3 0 Plateau 1.2781 1.3021 10.086 2 0 Median 1.3865 1.2333 0.29392 2 0 Median 1.3293 1.4217 NaN 1 0 Median 1.0478 0.89354 NaN 1 0 Median 295100000 141770000 153330000 181960000 90063000 91893000 56564000 27132000 29432000 33725000 15009000 18716000 11480000 4767000 6713100 10174000 4199500 5974800 1201000 600430 600580 17246 2112 17984 89687;89688;89689;89690;89691;89692;89693;89694;89695;89696;89697;89698 91347;91348;91349;91350;91351;91352;91353;91354;91355;91356;91357;91358;91359;91360;91361;91362 91349 16 KFVDIFQQTPLGR WVQAQYITDAEGLPKKFVDIFQQTPLGRFL PKKFVDIFQQTPLGRFLAQLHGEPQQELLQ K K F G R F 0 1 0 1 0 2 0 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 13 1 1547.846 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 3787 3799 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.064738 19.578 By MS/MS 1 0.81554 0.83651 NaN 1 Median 0.81554 0.83651 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3130100 1607600 1522500 3130100 1607600 1522500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17247 189 17985 89699 91363 91363 1 KFVETPGQK KGSIFVVFDSIESAKKFVETPGQKYKETDL SIESAKKFVETPGQKYKETDLLILFKDDYF K K F Q K Y 0 0 0 0 0 1 1 1 0 0 0 2 0 1 1 0 1 0 0 1 0 0 9 1 1032.5604 P05455;E7ERC4 P05455 166 174 SSB Lupus La protein yes no 2 0.0077472 57.59 By matching By MS/MS By matching 1 1 1 0.97867 0.92052 5.687 3 Plateau 0.9385 0.90968 NaN 1 0 Median 0.97867 0.92052 NaN 1 0 Median 0.78131 0.82969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4107100 1986800 2120300 1182300 583050 599260 2390700 1118700 1272000 534060 285080 248980 0 0 0 0 0 0 0 0 0 17248 1867 17986 89700;89701;89702 91364;91365 91365 2 KFVEVMTK ADLRIRKSQHSVLSRKFVEVMTKYNEAQVD QHSVLSRKFVEVMTKYNEAQVDFRERSKGR R K F T K Y 0 0 0 0 0 0 1 0 0 0 0 2 1 1 0 0 1 0 0 2 0 0 8 1 980.53649 A0A0C4DGE4;A0A286YF28;A0A0J9YW33;Q13277 A0A0C4DGE4 78 85 STX3 Syntaxin-3 yes no 2 0.0071022 78.334 By matching By MS/MS By matching 1 1 1 1.21 1.151 5.2331 3 Plateau 1.1486 1.1191 NaN 1 0 Median 1.3139 1.1837 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.21 1.0661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6974500 3106100 3868400 3137500 1344500 1793000 3570900 1615600 1955300 0 0 0 266170 146070 120100 0 0 0 0 0 0 17249 243 17987 89703;89704;89705 91366;91367 91366 2 KFVFFNIPQIQYK TVNYNTHGELGEGARKFVFFNIPQIQYKNP ARKFVFFNIPQIQYKNPWVQIMMFKNMTPS R K F Y K N 0 0 1 0 0 2 0 0 0 2 0 2 0 3 1 0 0 0 1 1 0 0 13 1 1670.9184 P82663;E7EPW2 P82663 46 58 MRPS25 28S ribosomal protein S25, mitochondrial yes no 3 0.053293 12.165 By MS/MS 1 0.74251 0.75593 NaN 1 Median 0.74251 0.75593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1586300 940330 645990 1586300 940330 645990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17250 2651 17988 89706 91368 91368 1 KFVGGSGQVSER GTTRIFSVTNGGQERKFVGGSGQVSERIMD QERKFVGGSGQVSERIMDLLGDQVKLNHPV R K F E R I 0 1 0 0 0 1 1 3 0 0 0 1 0 1 0 2 0 0 0 2 0 0 12 1 1249.6415 P21397;P27338 P21397 218 229 MAOA;MAOB Amine oxidase [flavin-containing] A;Amine oxidase [flavin-containing] B yes no 3 0.0075337 27.672 By MS/MS By MS/MS 1 1 1.3904 1.3444 42.424 2 Median 0.98044 0.99594 NaN 1 0 Median 1.9716 1.8147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2368900 956660 1412200 943490 446120 497380 1425400 510550 914860 0 0 0 0 0 0 0 0 0 0 0 0 17251 2089 17989 89707;89708 91369;91370;91371 91370 3 KFVIHPESNNLIIIETDHNAYTEATK AVFNQVAFPLQYTPRKFVIHPESNNLIIIE IIIETDHNAYTEATKAQRKQQMAEEMVEAA R K F T K A 2 0 3 1 0 0 3 0 2 4 1 2 0 1 1 1 3 0 1 1 0 0 26 1 2996.5244 Q15393 Q15393 787 812 SF3B3 Splicing factor 3B subunit 3 yes yes 4 2.0579E-26 85.573 By MS/MS 2 0.78081 0.90011 3.2906 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78081 0.90011 3.2906 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17749000 9724500 8024500 0 0 0 0 0 0 17749000 9724500 8024500 0 0 0 0 0 0 0 0 0 17252 2946 17990 89709;89710 91372;91373 91373 2 KFVIKPIDK GFPWSEIRNISFNDKKFVIKPIDKKAPDFV ISFNDKKFVIKPIDKKAPDFVFYAPRLRIN K K F D K K 0 0 0 1 0 0 0 0 0 2 0 3 0 1 1 0 0 0 0 1 0 0 9 2 1086.6801 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 254 262 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.047586 46.158 By matching By matching By MS/MS 1 1 2 0.95745 1.005 13.867 4 Median NaN NaN NaN 0 0 Median 0.98293 0.94374 NaN 1 0 Median 0.93263 1.0782 NaN 1 0 Median 0.96035 0.92658 20.394 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5063600 2653900 2409700 0 0 0 2125300 1099600 1025700 1393000 764030 628940 1545300 790220 755110 0 0 0 0 0 0 17253 2139;879;2235 17991 89711;89712;89713;89714 91374 91374 1 KFVMKPPQVVR IMREKNPDMVAGEKRKFVMKPPQVVRVGTK GEKRKFVMKPPQVVRVGTKKTSFVNFTDIC R K F V R V 0 1 0 0 0 1 0 0 0 0 0 2 1 1 2 0 0 0 0 3 0 0 11 2 1327.7798 P20042 P20042 201 211 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 0.00049231 58.676 By MS/MS By matching By MS/MS By MS/MS 1 1 3 4 0.8607 0.93872 17.205 9 Median 1.0827 1.2099 NaN 1 0 Median 0.68461 0.81833 NaN 1 0 Median 0.90442 1.0493 11.242 3 0 Median 0.85241 0.90796 13.943 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78628000 41638000 36990000 3609500 1816400 1793000 322090 194240 127850 12092000 6450500 5641500 62604000 33177000 29427000 0 0 0 0 0 0 17254 2072 17992;17993 89715;89716;89717;89718;89719;89720;89721;89722;89723 91375;91376;91377;91378;91379;91380 91378 834 6 KFVTDSNAVVQLK DEKSPEWSKFLGLIKKFVTDSNAVVQLKGL IKKFVTDSNAVVQLKGLEAALVYVENAHVA K K F L K G 1 0 1 1 0 1 0 0 0 0 1 2 0 1 0 1 1 0 0 3 0 0 13 1 1447.8035 Q14008;E9PQH5 Q14008 55 67 CKAP5 Cytoskeleton-associated protein 5 yes no 2;3 1.1799E-06 101.95 By MS/MS By MS/MS 3 3 0.95769 0.99505 37.242 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4198 1.675 49.821 3 0 Plateau 1.1828 1.1141 31.131 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30280000 13354000 16925000 0 0 0 0 0 0 22288000 9905800 12382000 7991900 3448300 4543600 0 0 0 0 0 0 17255 2850 17994 89724;89725;89726;89727;89728;89729 91381;91382;91383;91384 91383 4 KFWSLQDYFR APTTCSIPIDYNLYRKFWSLQDYFRNPVQC YNLYRKFWSLQDYFRNPVQCYEKISWKTFL R K F F R N 0 1 0 1 0 1 0 0 0 0 1 1 0 2 0 1 0 1 1 0 0 0 10 1 1388.6877 A0A087WWS1;Q96FV9;A0A087WY84;R4GN58 A0A087WWS1 237 246 THOC1 THO complex subunit 1 yes no 2;3 0.00096434 66.435 By matching By MS/MS 1 2 0.97634 1.0366 23.751 3 Median 0.72877 0.71608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0126 1.0752 5.1746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6467400 2968600 3498900 187680 117150 70530 0 0 0 6279800 2851400 3428400 0 0 0 0 0 0 0 0 0 17256 62 17995 89730;89731;89732 91385;91386;91387 91385 3 KFYEAFSK LELFSELAEDKENYKKFYEAFSKNLKLGIH EDKENYKKFYEAFSKNLKLGIHEDSTNRRR K K F S K N 1 0 0 0 0 0 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 8 1 1018.5124 P08238 P08238 428 435 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.03295 44.349 By MS/MS By matching 1 1 1.0904 1.0082 26.167 2 Median 1.1769 1.2131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0102 0.83787 NaN 1 0 Median 9831900 4445300 5386700 5131700 2393700 2738000 0 0 0 0 0 0 0 0 0 0 0 0 4700200 2051600 2648700 17257 1899 17996 89733;89734 91388;91389 91389 2 KFYEFSQR EKAWGAVVPLVGKLKKFYEFSQRLEAALRG PLVGKLKKFYEFSQRLEAALRGLLGALTST K K F Q R L 0 1 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 8 1 1103.54 Q9NUQ9;E5RI16;E5RJL8 Q9NUQ9 92 99 FAM49B Protein FAM49B yes no 2 0.041186 40.002 By MS/MS 1 1.2276 1.2245 NaN 1 Median 1.2276 1.2245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4915800 2320100 2595700 4915800 2320100 2595700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17258 4120 17997 89735 91390 91390 1 KFYEQFSK LELFTELAEDKENYKKFYEQFSKNIKLGIH EDKENYKKFYEQFSKNIKLGIHEDSQNRKK K K F S K N 0 0 0 0 0 1 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 8 1 1075.5338 P07900 P07900 436 443 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.045143 51.346 By MS/MS By MS/MS 1 1 0.88296 0.88132 17.793 2 Median 0.75572 0.77713 NaN 1 1 Median 1.0316 0.99948 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24501000 14591000 9910000 9451400 5718400 3733100 15049000 8872400 6176900 0 0 0 0 0 0 0 0 0 0 0 0 17259 1894 17998 89736;89737 91391;91392 91392 2 KFYGPEGPYGVFAGR LMAINGKVFDVTKGRKFYGPEGPYGVFAGR KFYGPEGPYGVFAGRDASRGLATFCLDKEA R K F G R D 1 1 0 0 0 0 1 4 0 0 0 1 0 2 2 0 0 0 2 1 0 0 15 1 1643.8096 O00264 O00264 105 119 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2;3 4.6302E-06 90.434 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.98604 1.0403 9.406 7 Median 0.854 0.89125 11.492 3 0 Median 1.1852 1.0747 3.1508 2 0 Median 0.92981 0.95893 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98604 1.0403 NaN 1 0 Median NaN NaN NaN 0 0 Median 84340000 45102000 39238000 77083000 41692000 35391000 2493300 1184700 1308600 3037200 1387000 1650200 0 0 0 1726100 838130 887960 0 0 0 17260 1451 17999 89738;89739;89740;89741;89742;89743;89744 91393;91394;91395;91396;91397;91398;91399;91400;91401;91402;91403;91404 91393 12 KFYPLEIDYGQDEEAVK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K K F V K K 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 P09874 P09874 637 653 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.1457E-12 124.3 By matching By MS/MS By MS/MS By MS/MS By matching 1 5 6 1 1 0.91952 0.98026 14.064 14 Median 1.1493 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84955 0.99084 15.785 5 0 Median 0.99023 0.95523 14.256 6 0 Median 0.87151 0.9762 NaN 1 0 Median 1.2333 1.0992 NaN 1 0 Median 249690000 129410000 120280000 2449000 938790 1510300 0 0 0 215420000 112900000 102530000 24837000 11658000 13179000 6822900 3852800 2970100 152830 58203 94624 17261 1922 18000 89745;89746;89747;89748;89749;89750;89751;89752;89753;89754;89755;89756;89757;89758 91405;91406;91407;91408;91409;91410;91411;91412;91413 91408 9 KFYPLEIDYGQDEEAVKK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K K F K K L 1 0 0 2 0 1 3 1 0 1 1 3 0 1 1 0 0 0 2 1 0 0 18 2 2171.0787 P09874 P09874 637 654 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 1.5114E-19 173.87 By MS/MS By MS/MS By MS/MS By matching 11 5 2 1 0.84631 0.99507 20.569 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80623 0.94409 13.624 11 2 Median 1.1296 1.1568 5.5719 5 0 Median 0.79544 0.88681 16.29 2 0 Median 0.47041 0.51111 NaN 1 0 Median 503760000 263890000 239880000 0 0 0 0 0 0 435640000 230800000 204840000 53594000 25209000 28384000 14365000 7778500 6586300 158900 97874 61027 17262 1922 18001 89759;89760;89761;89762;89763;89764;89765;89766;89767;89768;89769;89770;89771;89772;89773;89774;89775;89776;89777 91414;91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437;91438;91439;91440;91441;91442;91443;91444;91445 91440 32 KGAAFGFNVIATR KFMNLANHHAMWNSRKGAAFGFNVIATRAG SRKGAAFGFNVIATRAGEQLAPFLPQLVPR R K G T R A 3 1 1 0 0 0 0 2 0 1 0 1 0 2 0 0 1 0 0 1 0 0 13 1 1350.7408 Q5VYK3;J3KN16 Q5VYK3 1099 1111 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2;3 6.0104E-05 101.35 By MS/MS By matching 3 1 1.0196 1.0245 6.5011 4 Median 1.0447 1.0498 4.0931 3 2 Median 0.97423 0.93398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29264000 13216000 16048000 28132000 12663000 15468000 1132000 552890 579110 0 0 0 0 0 0 0 0 0 0 0 0 17263 3116 18002 89778;89779;89780;89781 91446;91447;91448;91449 91449 4 KGAAYGLAGLVK RLMQQLLESDKYAERKGAAYGLAGLVKGLG AERKGAAYGLAGLVKGLGILSLKQQEMMAA R K G V K G 3 0 0 0 0 0 0 3 0 0 2 2 0 0 0 0 0 0 1 1 0 0 12 1 1146.6761 Q92616 Q92616 1395 1406 GCN1L1 Translational activator GCN1 yes yes 2 0.057574 26.442 By matching By MS/MS 1 2 1.0622 1.0343 23.551 3 Median 1.0995 1.0758 NaN 1 0 Median 0.88982 0.85238 27.353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10338000 5170600 5167300 6549300 3459500 3089800 3788700 1711100 2077500 0 0 0 0 0 0 0 0 0 0 0 0 17264 3544 18003 89782;89783;89784 91450 91450 1 KGADIMYTGTVDCWR PFDTVRRRMMMQSGRKGADIMYTGTVDCWR KGADIMYTGTVDCWRKIFRDEGGKAFFKGA R K G W R K 1 1 0 2 1 0 0 2 0 1 0 1 1 0 0 0 2 1 1 1 0 0 15 1 1771.8022 P12235;P12236 P12236 245 259 SLC25A4;SLC25A6 ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 3 8.0167E-05 53.995 By MS/MS 3 1.4901 1.3876 19 3 Median NaN NaN NaN 0 0 Median 1.4901 1.3876 19 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6902300 3013300 3889000 0 0 0 6902300 3013300 3889000 0 0 0 0 0 0 0 0 0 0 0 0 17265 1977;1976 18004 89785;89786;89787 91451;91452 91451 2 KGAILSEEELAAMSPTAAAVAK KELENANDLLSATKRKGAILSEEELAAMSP EELAAMSPTAAAVAKIVKPGMKLTELYNAY R K G A K I 7 0 0 0 0 0 3 1 0 1 2 2 1 0 1 2 1 0 0 1 0 0 22 1 2157.1351 P12270 P12270 366 387 TPR Nucleoprotein TPR yes yes 3 6.7585E-10 59.814 By matching By MS/MS 1 2 0.93429 1.0568 26.796 3 Plateau 0.69589 0.75707 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77223 0.88424 35.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15893000 8619300 7274000 5318600 3298500 2020100 0 0 0 10575000 5320900 5253900 0 0 0 0 0 0 0 0 0 17266 1978 18005 89788;89789;89790 91453;91454 91453 2 KGAVAEDGDELR ______________________________ RGKKGAVAEDGDELRTEPEAKKSKTAAKKN K K G L R T 2 1 0 2 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 12 1 1258.6153 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V2D9 G3V3M6 7 18 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3 0.007821 27.137 By MS/MS 1 1.0948 0.96621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0948 0.96621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 467190 212100 255080 0 0 0 0 0 0 0 0 0 467190 212100 255080 0 0 0 0 0 0 17267 1112 18006 89791 91455 91455 1 KGAVAEDGDELRTEPEAK ______________________________ VAEDGDELRTEPEAKKSKTAAKKNDKEAAG K K G A K K 3 1 0 2 0 0 4 2 0 0 1 2 0 0 1 0 1 0 0 1 0 0 18 2 1913.933 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9 G3V3M6 7 24 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3;4 8.3344E-05 41.86 By matching By MS/MS By MS/MS 1 1 4 0.96355 1.0256 14.25 6 Median 0.73022 0.77312 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91875 1.0405 NaN 1 0 Median 1.027 1.0273 11.098 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24059000 11189000 12869000 335100 182760 152340 0 0 0 3888100 1982400 1905700 19836000 9024300 10811000 0 0 0 0 0 0 17268 1112 18007 89792;89793;89794;89795;89796;89797 91456;91457;91458;91459;91460;91461;91462;91463;91464;91465 91461 10 KGAVITQIR SVTVDPKYHPKIIGRKGAVITQIRLEHDVN PKIIGRKGAVITQIRLEHDVNIQFPDKDDG R K G I R L 1 1 0 0 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 1 0 0 9 1 984.60801 Q00341;A0A024R4E5;H0Y394 Q00341 1071 1079 HDLBP Vigilin yes no 2 0.0012408 93.178 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2106 1.1629 9.1118 4 Median 1.2342 1.2626 NaN 1 0 Median 1.1875 1.1035 NaN 1 0 Median 0.90624 1.0381 NaN 1 0 Median 1.2694 1.2255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13507000 6069900 7437400 1921900 849800 1072100 10550000 4740700 5809700 590690 286900 303790 444440 192560 251880 0 0 0 0 0 0 17269 4 18008 89798;89799;89800;89801 91466;91467 91467 2 KGAYDIFLNAK DFQKDILIACRLNQKKGAYDIFLNAKEQNI LNQKKGAYDIFLNAKEQNIVFNAETYSNLI K K G A K E 2 0 1 1 0 0 0 1 0 1 1 2 0 1 0 0 0 0 1 0 0 0 11 1 1238.6659 P42704 P42704 1049 1059 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00022944 81.338 By MS/MS By matching 1 1 1.2076 1.1911 13.141 2 Median 1.0372 1.0854 NaN 1 0 Median 1.4059 1.3071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19632000 8984800 10648000 13280000 6645200 6635000 6352100 2339600 4012500 0 0 0 0 0 0 0 0 0 0 0 0 17270 2315 18009 89802;89803 91468;91469 91468 2 KGDECELLGHSK RGTVVTGTLERGILKKGDECELLGHSKNIR ILKKGDECELLGHSKNIRTVVTGIEMFHKS K K G S K N 0 0 0 1 1 0 2 2 1 0 2 2 0 0 0 1 0 0 0 0 0 0 12 1 1371.6453 P49411 P49411 286 297 TUFM Elongation factor Tu, mitochondrial yes yes 3 0.0036695 52.576 By MS/MS By MS/MS 1 2 1.4082 1.3248 27.432 3 Median 0.85092 0.82607 NaN 1 0 Median 1.4122 1.3285 0.39246 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5459800 2276100 3183700 947150 478630 468520 4512600 1797500 2715200 0 0 0 0 0 0 0 0 0 0 0 0 17271 2382 18010 89804;89805;89806 91470;91471;91472 91471 3 KGDEVDGVDEVAK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK R K G A K K 1 0 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 13 1 1359.6518 P09874 P09874 209 221 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 8.691E-07 132.59 By MS/MS By MS/MS By MS/MS 2 7 16 1.1874 1.1662 35.16 24 Median NaN NaN NaN 0 0 Median 1.502 1.4026 53.344 2 0 Median 1.0054 1.1748 49.32 7 2 Median 1.2522 1.1576 25.921 15 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159810000 72844000 86963000 0 0 0 6211000 2714000 3497000 68265000 33913000 34351000 85332000 36217000 49115000 0 0 0 0 0 0 17272 1922 18011 89807;89808;89809;89810;89811;89812;89813;89814;89815;89816;89817;89818;89819;89820;89821;89822;89823;89824;89825;89826;89827;89828;89829;89830;89831 91473;91474;91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488;91489;91490;91491;91492;91493;91494;91495;91496 91495 23 KGDEVDGVDEVAKK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK RKGDEVDGVDEVAKKKSKKEKDKDSKLEKA R K G K K K 1 0 0 3 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 3 0 0 14 2 1487.7468 P09874 P09874 209 222 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 3.0286E-11 103.83 By MS/MS By MS/MS 3 3 1.0062 1.069 21.38 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72598 0.87896 24.162 2 1 Median 1.2161 1.1529 7.1764 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11481000 5985300 5495700 0 0 0 0 0 0 7955500 4765800 3189700 3525400 1219500 2306000 0 0 0 0 0 0 17273 1922 18012 89832;89833;89834;89835;89836;89837 91497;91498;91499;91500;91501 91501 5 KGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR EQIAAEQKANPDGKKKGDGGGAGGGGGGGG ENTTSEAGLPQGEARTRDDGDEEGLLTHSE K K G A R T 4 2 1 1 0 2 3 25 0 0 1 1 0 0 4 5 2 0 0 0 0 0 51 2 4178.8582 Q9UKM9 Q9UKM9 224 274 RALY RNA-binding protein Raly yes yes 4 5.6054E-08 37.714 By MS/MS By MS/MS By MS/MS 1 1 3 0.58333 0.57293 18.948 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59388 0.53694 NaN 1 1 Median 0.36754 0.41926 NaN 1 1 Median 0.58594 0.62518 3.1665 2 0 Median 18578000 12043000 6535100 0 0 0 0 0 0 0 0 0 1986800 1409200 577550 7388600 5288500 2100100 9202800 5345300 3857500 17274 4313 18013 89838;89839;89840;89841;89842 91502;91503;91504;91505;91506;91507;91508;91509 91502 8 KGDIFLVR VYLKPYFLEAYRPIRKGDIFLVRGGMRAVE EAYRPIRKGDIFLVRGGMRAVEFKVVETDP R K G V R G 0 1 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 1 946.56 P55072;C9JUP7;C9IZA5 P55072 148 155 VCP Transitional endoplasmic reticulum ATPase yes no 2 0.003591 107.59 By MS/MS By MS/MS By matching 3 6 1 1.3319 1.2436 24.03 10 Median 1.1456 1.1353 6.3898 3 0 Median 1.3821 1.2871 27.876 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4823 1.6836 NaN 1 0 Median NaN NaN NaN 0 0 Median 66154000 29655000 36500000 31845000 14887000 16958000 32396000 13984000 18412000 0 0 0 0 0 0 1913000 783360 1129700 0 0 0 17275 2494 18014 89843;89844;89845;89846;89847;89848;89849;89850;89851;89852 91510;91511;91512 91510 3 KGDIIQLQR HEELMLGDPCLKDLKKGDIIQLQRRGFFIC CLKDLKKGDIIQLQRRGFFICDQPYEPVSP K K G Q R R 0 1 0 1 0 2 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1069.6244 P07814;V9GYZ6 P07814 666 674 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 3.6302E-05 155 By MS/MS By MS/MS By matching 1 2 1 1.2908 1.2715 10.242 4 Median 1.2636 1.2701 NaN 1 0 Median 1.3665 1.2877 17.694 2 0 Median NaN NaN NaN 0 0 Median 1.3186 1.2729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22202000 9567400 12635000 10512000 4554100 5957700 10888000 4634900 6253200 0 0 0 802200 378400 423810 0 0 0 0 0 0 17276 1892 18015 89853;89854;89855;89856 91513;91514;91515;91516;91517;91518 91514 6 KGDILTLLNSTNKDWWK LYDYQEKSPREVTMKKGDILTLLNSTNKDW DILTLLNSTNKDWWKVEVNDRQGFVPAAYV K K G W K V 0 0 2 2 0 0 0 1 0 1 3 3 0 0 0 1 2 2 0 0 0 0 17 2 2031.0789 A0A0D9SF54;Q13813 Q13813 990 1006 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00012942 44.005 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.0176 1.1442 20.917 5 Median 1.2809 1.4024 NaN 1 0 Median 1.1675 1.2162 NaN 1 0 Median 0.81162 0.95764 25.17 2 0 Median 1.0176 1.0313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26265000 12610000 13656000 3459600 1545500 1914100 12615000 6043200 6571900 10087000 4985300 5102000 103180 35626 67553 0 0 0 0 0 0 17277 264;2838 18016 89857;89858;89859;89860;89861 91519;91520;91521;91522 91521 4 KGDIVDIK KHGVVPLATYMRIYKKGDIVDIKGMGTVQK TYMRIYKKGDIVDIKGMGTVQKGMPHKCYH K K G I K G 0 0 0 2 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 1 0 0 8 1 886.51238 P46778;G3V1B3;M0R181 P46778 36 43 RPL21 60S ribosomal protein L21 yes no 2 0.0066525 80.165 By MS/MS By matching By MS/MS 1 1 1 1.1344 1.1527 2.2327 3 Median 1.1344 1.1527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1234 1.1963 NaN 1 0 Median 1.3242 1.1492 NaN 1 0 Median 21558000 9877900 11680000 14502000 6696200 7806000 0 0 0 0 0 0 0 0 0 4735200 2193400 2541800 2320700 988380 1332400 17278 2344 18017 89862;89863;89864 91523;91524 91523 2 KGDIVDIKGMGTVQK KHGVVPLATYMRIYKKGDIVDIKGMGTVQK KGDIVDIKGMGTVQKGMPHKCYHGKTGRVY K K G Q K G 0 0 0 2 0 1 0 3 0 2 0 3 1 0 0 0 1 0 0 2 0 0 15 2 1587.8654 P46778;G3V1B3;M0R181 P46778 36 50 RPL21 60S ribosomal protein L21 yes no 3 0.0001251 54.44 By MS/MS By MS/MS By matching By matching 1 1 1 2 1.1113 1.1517 11.173 5 Median 1.122 1.1849 NaN 1 0 Median 1.1113 1.0875 NaN 1 0 Median 1.2824 1.4469 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0264 1.1414 1.2754 2 0 Median NaN NaN NaN 0 0 Median 29730000 13864000 15866000 14530000 6817800 7712400 10523000 4608100 5914900 2183000 845030 1337900 0 0 0 2493800 1593400 900390 0 0 0 17279 2344 18018 89865;89866;89867;89868;89869 91525;91526;91527 91526 1069 2 KGDLLLNR NRPDSKNWQYQETIKKGDLLLNRVQKLSRV QYQETIKKGDLLLNRVQKLSRVINM_____ K K G N R V 0 1 1 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 927.55016 Q15008 Q15008 372 379 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2 0.0051056 86.833 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1799 1.1118 24.082 5 Median 1.0556 1.1013 0.84488 2 0 Median 1.1799 1.1118 NaN 1 0 Median 1.6964 1.9257 NaN 1 0 Median 1.4123 1.2454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15023000 6961200 8061600 4296100 2060800 2235300 8592500 3964600 4627900 1595500 723910 871570 538760 211920 326840 0 0 0 0 0 0 17280 2911 18019 89870;89871;89872;89873;89874 91528;91529;91530;91531;91532;91533 91532 6 KGDMDELEK AKKSLQNAQKHYKKRKGDMDELEKEMLSVE KHYKKRKGDMDELEKEMLSVEKARQEFEER R K G E K E 0 0 0 2 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 9 1 1063.4856 Q14683;G8JLG1 Q14683 330 338 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 4.8727E-05 121.73 By MS/MS 1 1.024 0.95441 NaN 1 Median NaN NaN NaN 0 0 Median 1.024 0.95441 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4045600 2109500 1936100 0 0 0 4045600 2109500 1936100 0 0 0 0 0 0 0 0 0 0 0 0 17281 2889 18020 89875 91534 91534 1 KGDMDELEKEMLSVEK AKKSLQNAQKHYKKRKGDMDELEKEMLSVE GDMDELEKEMLSVEKARQEFEERMEEESQS R K G E K A 0 0 0 2 0 0 4 1 0 0 2 3 2 0 0 1 0 0 0 1 0 0 16 2 1879.8907 Q14683;G8JLG1 Q14683 330 345 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.0010994 35.757 By matching By MS/MS By matching 1 1 1 0.86794 1.016 13.187 3 Median 1.1637 1.2741 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84211 1.0119 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86794 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median 8081900 3674700 4407200 2256900 797830 1459100 0 0 0 4844600 2332200 2512400 0 0 0 980350 544680 435670 0 0 0 17282 2889 18021 89876;89877;89878 91535;91536 91535 2 KGDVEGSQSQDEGEGSGESER FQKLVPGGKATLVMKKGDVEGSQSQDEGEG SQSQDEGEGSGESERGSGSQSSVPSVDQFT K K G E R G 0 1 0 2 0 2 5 5 0 0 0 1 0 0 0 4 0 0 0 1 0 0 21 1 2165.8945 Q9UQE7 Q9UQE7 1059 1079 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.051446 7.712 By matching By MS/MS 1 2 0.78126 0.88238 6.3338 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76134 0.87359 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7423 0.83333 8.0869 2 0 Median NaN NaN NaN 0 0 Median 1383500 692670 690830 0 0 0 0 0 0 374350 205520 168840 0 0 0 1009200 487150 522000 0 0 0 17283 4362 18022 89879;89880;89881 91537 91537 1 KGDVLHMHYTGK IGVKKRVDHCPIKSRKGDVLHMHYTGKLED KSRKGDVLHMHYTGKLEDGTEFDSSLPQNQ R K G G K L 0 0 0 1 0 0 0 2 2 0 1 2 1 0 0 0 1 0 1 1 0 0 12 1 1384.6922 A0A494C1N0;P26885 A0A494C1N0 77 88 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes no 2;3 0.00046657 49.929 By matching By MS/MS By matching 3 2 1 1.2384 1.2128 11.617 6 Median 1.0775 1.0996 8.4568 3 0 Median 1.5462 1.3404 6.1642 2 0 Median 1.2046 1.2336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11829000 4729700 7099700 1460600 670720 789920 8401700 3190700 5211000 1967000 868250 1098800 0 0 0 0 0 0 0 0 0 17284 472 18023 89882;89883;89884;89885;89886;89887 91538;91539 91538 2 KGDVVIVLTGWRPGSGFTNTMR VNFAMNVGKARGFFKKGDVVIVLTGWRPGS LTGWRPGSGFTNTMRVVPVP__________ K K G M R V 0 2 1 1 0 0 0 4 0 1 1 1 1 1 1 1 3 1 0 3 0 0 22 2 2390.2529 P14618;B4DNK4 P14618 505 526 PKM Pyruvate kinase PKM;Pyruvate kinase no no 3;4 0.00010813 34.009 By MS/MS By matching 2 3 0.99966 1.0657 6.1893 5 Median 1.0137 1.0234 1.978 2 0 Median 0.98051 1.1748 4.9339 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89671000 45277000 44395000 75251000 38304000 36947000 14420000 6972500 7447900 0 0 0 0 0 0 0 0 0 0 0 0 17285 2005 18024 89888;89889;89890;89891;89892 91540;91541;91542;91543 91542 4 KGDYIEAESSYSR EESTRLKEEGNEQFKKGDYIEAESSYSRAL FKKGDYIEAESSYSRALEMCPSCFQKERSI K K G S R A 1 1 0 1 0 0 2 1 0 1 0 1 0 0 0 3 0 0 2 0 0 0 13 1 1503.6842 Q99614 Q99614 129 141 TTC1 Tetratricopeptide repeat protein 1 yes yes 2 0.020495 33.886 By MS/MS 1 1.0075 1.0792 NaN 1 Median 1.0075 1.0792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2683200 1158900 1524300 2683200 1158900 1524300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17286 3758 18025 89893 91544 91544 1 KGEDFVK KMISDAIPELKASIKKGEDFVKTLK_____ PELKASIKKGEDFVKTLK____________ K K G V K T 0 0 0 1 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 1 0 0 7 1 821.42832 P40926;G3XAL0 P40926 329 335 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.03703 53.554 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3169 1.271 12.931 4 Median 1.0562 1.0237 NaN 1 0 Median 1.5348 1.3834 NaN 1 0 Median 1.1791 1.2509 NaN 1 0 Median 1.4707 1.2914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3131800 1475400 1656300 1675500 942300 733150 1005800 352940 652840 198770 70359 128410 251750 109830 141910 0 0 0 0 0 0 17287 2292 18026 89894;89895;89896;89897 91545;91546;91547;91548 91546 4 KGEDVLGSVR PALSAALYYLVVQGKKGEDVLGSVRRALTH VVQGKKGEDVLGSVRRALTHIDHSLSRQNC K K G V R R 0 1 0 1 0 0 1 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1058.572 P56192;F5H2V6 P56192 109 118 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.00058159 103.26 By MS/MS By MS/MS By MS/MS 1 2 1 1.094 1.0785 6.3814 3 Median 1.037 1.0785 NaN 1 0 Median 1.127 1.0878 8.998 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13874000 6619900 7253900 3394100 1567300 1826800 10480000 5052700 5427100 0 0 0 0 0 0 0 0 0 0 0 0 17288 2508 18027 89898;89899;89900;89901 91549;91550;91551;91552;91553;91554;91555 91551 7 KGEESEGFLNPELLETSR GDGKGNKHKKHRKRRKGEESEGFLNPELLE ESEGFLNPELLETSRKSREPTGVEENKTDS R K G S R K 0 1 1 0 0 0 5 2 0 0 3 1 0 1 1 2 1 0 0 0 0 0 18 1 2033.9906 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 941 958 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 0.00015628 48.848 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17289 3251 18028 89902 91556 91556 1 KGEEVTPISAIR KKAEEERDEEEDKRRKGEEVTPISAIRHEG KRRKGEEVTPISAIRHEGKTDSERTDTAAD R K G I R H 1 1 0 0 0 0 2 1 0 2 0 1 0 0 1 1 1 0 0 1 0 0 12 1 1298.7194 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31;A0A1B0GTF8;A0A0J9YW26;A0A0J9YWN0;A0A0J9YWE1;A0A0J9YWS4 A0A0A0MRA8 505 516 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 0.0022627 51.092 By matching By MS/MS 1 1 0.60485 0.59679 65.223 2 Median 0.91201 0.94649 NaN 1 0 Median 0.40114 0.3763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7227700 4481700 2746100 2389200 1429400 959800 4838600 3052300 1786300 0 0 0 0 0 0 0 0 0 0 0 0 17290 156 18029 89903;89904 91557;91558 91557 2 KGEFETGFEK GASQADLAVLVISARKGEFETGFEKGGQTR VISARKGEFETGFEKGGQTREHAMLAKTAG R K G E K G 0 0 0 0 0 0 3 2 0 0 0 2 0 2 0 0 1 0 0 0 0 0 10 1 1170.5557 P15170;H3BR35;Q8IYD1 P15170 187 196 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 2 0.00010303 133.42 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.1934 1.1539 10.755 8 Median 1.1961 1.2256 6.9586 3 0 Median 1.1291 1.0724 3.712 2 0 Median 1.2328 1.369 NaN 1 0 Median 1.1413 1.084 12.211 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64590000 30202000 34388000 15983000 7242800 8740400 27837000 13300000 14536000 15122000 7090500 8031500 5648200 2568400 3079800 0 0 0 0 0 0 17291 2016 18030 89905;89906;89907;89908;89909;89910;89911;89912 91559;91560;91561;91562;91563;91564;91565;91566;91567 91564 9 KGEGGTDPELEGELDSR RLYGCFLRVYMQSKRKGEGGTDPELEGELD EGGTDPELEGELDSRYARRRYYRLLQSPLC R K G S R Y 0 1 0 2 0 0 4 4 0 0 2 1 0 0 1 1 1 0 0 0 0 0 17 1 1787.8174 Q9UJX6 Q9UJX6 190 206 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 3 0.0072987 35.64 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17292 4303 18031 89913 91568 91568 1 KGEGLPNFDNNNIK ISRDKITRPGAKLWKKGEGLPNFDNNNIKG KKGEGLPNFDNNNIKGSLIITFDVDFPKEQ K K G I K G 0 0 4 1 0 0 1 2 0 1 1 2 0 1 1 0 0 0 0 0 0 0 14 1 1558.774 Q9UBS4;H7C2Y5 Q9UBS4 302 315 DNAJB11 DnaJ homolog subfamily B member 11 yes no 2;3 0.00030596 63.694 By MS/MS By MS/MS 2 1 0.90086 0.98168 20.328 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87522 0.95375 4.0832 2 0 Median 1.5177 1.3514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28651000 15052000 13600000 0 0 0 0 0 0 25905000 13913000 11992000 2746500 1138500 1607900 0 0 0 0 0 0 17293 4246 18032 89914;89915;89916 91569;91570;91571;91572;91573 91570 5 KGEIAASIATHMR GPDGEFLDYFGQNKRKGEIAASIATHMRPY KRKGEIAASIATHMRPYRKKS_________ R K G M R P 3 1 0 0 0 0 1 1 1 2 0 1 1 0 0 1 1 0 0 0 0 0 13 1 1383.7293 J3QL56;O75880 J3QL56 252 264 SCO1 Protein SCO1 homolog, mitochondrial yes no 2;3 3.8601E-06 95.264 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1.249 1.2255 26.317 6 Median 1.0707 1.1169 NaN 1 0 Median 1.3722 1.2717 NaN 1 1 Median 0.88514 0.95052 30.711 2 0 Median 1.9254 1.7044 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5087 1.3375 NaN 1 0 Median 39701000 17146000 22555000 18211000 8325600 9885500 6498100 2690600 3807400 9351800 4179500 5172300 2516400 791360 1725000 0 0 0 3123700 1159100 1964600 17294 1339 18033 89917;89918;89919;89920;89921;89922;89923 91574;91575;91576;91577;91578;91579;91580 91579 7 KGEIAASIATHMRPYR GPDGEFLDYFGQNKRKGEIAASIATHMRPY GEIAASIATHMRPYRKKS____________ R K G Y R K 3 2 0 0 0 0 1 1 1 2 0 1 1 0 1 1 1 0 1 0 0 0 16 2 1799.9465 J3QL56;O75880 J3QL56 252 267 SCO1 Protein SCO1 homolog, mitochondrial yes no 3;4 2.3717E-06 85.619 By MS/MS By MS/MS By matching By MS/MS 2 2 2 3 1.1278 1.1387 19.583 9 Median 0.94191 0.94505 3.9279 2 0 Median 1.5552 1.4403 12.35 2 0 Median 1.0138 1.1634 15.067 2 0 Median 1.3133 1.1387 21.13 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75055000 35838000 39216000 49616000 25244000 24371000 11715000 4418300 7296800 4945000 2327500 2617500 8779000 3848300 4930700 0 0 0 0 0 0 17295 1339 18034;18035 89924;89925;89926;89927;89928;89929;89930;89931;89932 91581;91582;91583;91584;91585;91586;91587;91588 91581 443 8 KGEIFELK ______________________________ KYFTTNKKGEIFELKAELNNEKKEKRKEAV K K G L K A 0 0 0 0 0 0 2 1 0 1 1 2 0 1 0 0 0 0 0 0 0 0 8 1 962.54368 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6;K7EJX1;K7EN71;K7ERB2;A0A087WXS3;K7EKZ5 A0A087X253 12 19 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.010247 68.016 By matching By MS/MS 1 2 1.1271 1.045 13.661 3 Median 0.85986 0.90269 NaN 1 0 Median 1.1752 1.1133 8.951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22695000 10849000 11846000 7628600 4001500 3627100 15066000 6847900 8218500 0 0 0 0 0 0 0 0 0 0 0 0 17296 128;2752 18036 89933;89934;89935 91589;91590 91589 2 KGEITGEVHMPSGK LGFKPFDLVIPFAVRKGEITGEVHMPSGKT RKGEITGEVHMPSGKTATPEIVDNKDGTVT R K G G K T 0 0 0 0 0 0 2 3 1 1 0 2 1 0 1 1 1 0 0 1 0 0 14 1 1468.7344 O75369;E7EN95 O75369 1757 1770 FLNB Filamin-B yes no 3 1.1821E-06 123.63 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 2 0.98597 0.94763 21.746 8 Median 1.1023 1.0789 33.416 3 0 Median 0.98597 0.94763 7.1114 2 0 Median 0.69135 0.79429 NaN 1 0 Median 0.95487 0.92976 26.369 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64191000 32203000 31987000 13345000 6004000 7341400 46208000 23748000 22460000 2576700 1480400 1096300 2060500 970690 1089800 0 0 0 0 0 0 17297 1664 18037 89936;89937;89938;89939;89940;89941;89942;89943;89944 91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602;91603;91604 91599 14 KGEITGEVR TSLRPFDLVIPFTIKKGEITGEVRMPSGKV IPFTIKKGEITGEVRMPSGKVAQPTITDNK K K G V R M 0 1 0 0 0 0 2 2 0 1 0 1 0 0 0 0 1 0 0 1 0 0 9 1 987.53491 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1801 1809 FLNA Filamin-A no no 2 0.012057 50.04 By matching By MS/MS By matching By matching By matching By matching 1 3 2 1 1 2 1.0061 0.94756 18.496 10 Median 1.0801 1.1073 NaN 1 0 Median 0.96556 0.92843 4.301 3 0 Plateau 0.95806 1.0523 19.27 2 0 Median 1.0068 0.93781 NaN 1 0 Median 1.3585 1.5323 NaN 1 0 Median 1.0136 0.9006 13.722 2 0 Median 5769900 2872200 2897700 199860 83302 116560 3678000 1850800 1827200 695310 374280 321030 84922 35319 49603 594680 239260 355420 517220 289250 227960 17298 2088;3120 18038 89945;89946;89947;89948;89949;89950;89951;89952;89953;89954 91605;91606;91607;91608;91609;91610;91611;91612;91613;91614;91615;91616 91611 12 KGEKDIPGLTDTTVPR IVDANLSVLNLVIVKKGEKDIPGLTDTTVP GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K K G P R R 0 1 0 2 0 0 1 2 0 1 1 2 0 0 2 0 3 0 0 1 0 0 16 2 1725.9261 P62753;A2A3R5 P62753 116 131 RPS6 40S ribosomal protein S6 yes no 3 4.1314E-07 91.355 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.93017 0.90278 21.131 6 Median 0.78504 0.81318 NaN 1 0 Median 0.9492 0.90278 3.3145 2 0 Median NaN NaN NaN 0 0 Median 0.91211 0.81626 36.284 2 0 Median 0.97672 1.1531 NaN 1 0 Median NaN NaN NaN 0 0 Median 30080000 16499000 13581000 10525000 6334900 4190200 11344000 5807300 5536300 0 0 0 2478400 1366200 1112200 5733000 2990900 2742100 0 0 0 17299 2596 18039 89955;89956;89957;89958;89959;89960 91617;91618;91619;91620;91621;91622 91621 6 KGENYVYINEATR VEDPETGLYLLQIIKKGENYVYINEATRHV IKKGENYVYINEATRHVLQSRTAKMRVGRF K K G T R H 1 1 2 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 2 1 0 0 13 1 1555.7631 P58107;A0A075B730 P58107 1762 1774 EPPK1 Epiplakin yes no 2;3 2.8369E-30 168.98 By MS/MS By MS/MS 1 2 1.1688 1.2056 15.686 3 Plateau 1.1688 1.2192 NaN 1 0 Median 1.0639 0.98021 13.216 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65212000 29967000 35245000 16642000 7635900 9006000 48570000 22331000 26239000 0 0 0 0 0 0 0 0 0 0 0 0 17300 2520 18040 89961;89962;89963 91623;91624;91625;91626 91626 4 KGEPVSAEDLGVSGALTVLMK DMRERLGKMVVASSKKGEPVSAEDLGVSGA AEDLGVSGALTVLMKDAIKPNLMQTLEGTP K K G M K D 2 0 0 1 0 0 2 3 0 0 3 2 1 0 1 2 1 0 0 3 0 0 21 1 2100.1137 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 596 616 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 1.5562E-06 40.622 By MS/MS By MS/MS 1 2 0.99254 0.96096 11.183 3 Median 0.78162 0.82474 NaN 1 1 Median 1.044 0.99269 4.5932 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12936000 6624000 6311600 3123100 1533500 1589600 9812500 5090400 4722000 0 0 0 0 0 0 0 0 0 0 0 0 17301 1968 18041 89964;89965;89966 91627;91628;91629 91629 3 KGEQMNSAVLPEMENQVAVSSLSAVIK TKDIYQDLNRLLKGKKGEQMNSAVLPEMEN MENQVAVSSLSAVIKFLELLSDDSNFGQFE K K G I K F 3 0 2 0 0 2 3 1 0 1 2 2 2 0 1 4 0 0 0 4 0 0 27 1 2858.4518 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 249 275 MSH2 DNA mismatch repair protein Msh2 yes no 3 0.025841 12.491 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.92204 0.93479 26.673 4 Median 0.9817 1.0358 NaN 1 0 Median 1.5416 1.4673 NaN 1 0 Median 0.73797 0.84361 NaN 1 0 Median 0.866 0.82493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8983000 4641000 4342000 3140400 1631800 1508600 290050 123020 167030 4868000 2583500 2284500 684470 302690 381780 0 0 0 0 0 0 17302 2324 18042 89967;89968;89969;89970 91630;91631;91632;91633 91632 4 KGESGQSWPR SKHKRTDRSILCCLRKGESGQSWPRLTKER LCCLRKGESGQSWPRLTKERAKLNWLSVDF R K G P R L 0 1 0 0 0 1 1 2 0 0 0 1 0 0 1 2 0 1 0 0 0 0 10 1 1130.5469 Q15185;A0A087WYT3;B4DDC6 Q15185 79 88 PTGES3 Prostaglandin E synthase 3 yes no 2 0.020213 39.022 By MS/MS By matching 1 1 0.81682 0.77391 4.0415 2 Median NaN NaN NaN 0 0 Median 0.85241 0.7521 NaN 1 0 Median 0.78271 0.79634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049300 1626000 1423300 0 0 0 2693000 1436600 1256400 356290 189400 166890 0 0 0 0 0 0 0 0 0 17303 87 18043 89971;89972 91634 91634 1 KGESQTDIEITR KNPRIVLLDSSLEYKKGESQTDIEITREED EYKKGESQTDIEITREEDFTRILQMEEEYI K K G T R E 0 1 0 1 0 1 2 1 0 2 0 1 0 0 0 1 2 0 0 0 0 0 12 1 1375.6943 P49368;B4DUR8 P49368 249 260 CCT3 T-complex protein 1 subunit gamma yes no 2;3 1.0354E-06 168.3 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.6872 0.68981 57.936 7 Median 0.82173 0.82451 25.224 2 0 Median 1.0021 0.90912 4.8202 2 0 Median 0.32645 0.36333 81.481 2 1 Median 0.40362 0.37008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89795000 46838000 42957000 19671000 11879000 7791900 62717000 29672000 33045000 4420200 3165900 1254200 2986600 2120500 866010 0 0 0 0 0 0 17304 2379 18044 89973;89974;89975;89976;89977;89978;89979 91635;91636;91637;91638;91639;91640;91641;91642;91643;91644 91643 10 KGESQTDIEITREEDFTR KNPRIVLLDSSLEYKKGESQTDIEITREED SQTDIEITREEDFTRILQMEEEYIQQLCED K K G T R I 0 2 0 2 0 1 4 1 0 2 0 1 0 1 0 1 3 0 0 0 0 0 18 2 2153.0237 P49368;B4DUR8 P49368 249 266 CCT3 T-complex protein 1 subunit gamma yes no 2;3;4 2.6305E-25 187.5 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 2 1.1292 1.1607 15.503 12 Median 1.1022 1.1127 6.4933 3 0 Median 1.2044 1.3323 10.782 3 0 Median 1.1313 1.2027 7.6182 2 1 Median 0.9908 0.90369 2.9031 2 0 Median 1.2183 1.3939 7.3132 2 0 Median NaN NaN NaN 0 0 Median 295720000 134580000 161140000 255800000 116260000 139540000 18052000 7884200 10167000 11080000 5265900 5814500 2207100 1077300 1129700 8581700 4096300 4485500 0 0 0 17305 2379 18045 89980;89981;89982;89983;89984;89985;89986;89987;89988;89989;89990;89991 91645;91646;91647;91648;91649;91650;91651;91652 91646 8 KGFDQEEVFEKPTR FRSVFYRSYKEQESKKGFDQEEVFEKPTRE KKGFDQEEVFEKPTRETCQGMRHAIYDKLD K K G T R E 0 1 0 1 0 1 3 1 0 0 0 2 0 2 1 0 1 0 0 1 0 0 14 2 1708.842 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 814 827 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.005466 37.177 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.96584 1.0263 13.482 4 Median NaN NaN NaN 0 0 Median 1.074 1.0641 NaN 1 0 Median 1.1293 1.2418 NaN 1 0 Median 0.86854 0.98986 NaN 1 0 Median 0.76579 0.90243 NaN 1 0 Median NaN NaN NaN 0 0 Median 35687000 17577000 18111000 0 0 0 8682300 3900600 4781700 9419700 4585200 4834500 5227500 2566900 2660600 12358000 6523900 5833700 0 0 0 17306 671 18046 89992;89993;89994;89995 91653;91654 91653 1 KGFIGPGIDVPAPDMSTGER ELEKITRRFTMELAKKGFIGPGIDVPAPDM PGIDVPAPDMSTGEREMSWIADTYASTIGH K K G E R E 1 1 0 2 0 0 1 4 0 2 0 1 1 1 3 1 1 0 0 1 0 0 20 1 2043.0095 P00367 P00367 212 231 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 3 3.0285E-05 56.529 By MS/MS 2 0.58806 0.58735 3.9302 2 Median 0.58806 0.58735 3.9302 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9251800 5638600 3613300 9251800 5638600 3613300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17307 1814 18047 89996;89997 91655;91656 91656 2 KGFNEGLWEIDNNPK PYSENKEKYGKPNKRKGFNEGLWEIDNNPK KGFNEGLWEIDNNPKVKFSSQQAATKQSNA R K G P K V 0 0 3 1 0 0 2 2 0 1 1 2 0 1 1 0 0 1 0 0 0 0 15 1 1759.8529 O75475 O75475 75 89 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 1.3618E-09 119.76 By matching By MS/MS By MS/MS By MS/MS By matching 1 5 6 1 1 0.94636 0.98272 21.563 14 Median 0.83381 0.91291 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87986 0.91358 24.058 5 0 Median 1.1741 1.144 16.017 6 0 Median 0.96088 1.0251 NaN 1 0 Median 0.93205 0.8307 NaN 1 0 Median 82504000 44695000 37809000 2226000 1127200 1098800 0 0 0 68619000 37877000 30742000 6727400 2982600 3744800 4657700 2554300 2103500 274430 154580 119850 17308 1674 18048 89998;89999;90000;90001;90002;90003;90004;90005;90006;90007;90008;90009;90010;90011 91657;91658;91659;91660;91661;91662;91663;91664;91665;91666 91662 10 KGFNEGLWEIENNPGVK PYKEYKDKFGKSNKRKGFNEGLWEIENNPG FNEGLWEIENNPGVKFTGYQAIQQQSSSET R K G V K F 0 0 3 0 0 0 3 3 0 1 1 2 0 1 1 0 0 1 0 1 0 0 17 1 1929.9585 Q9Y3E1;H3BPM9 Q9Y3E1 79 95 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes no 3 0.0016003 27.149 By MS/MS By matching 2 1 0.88708 0.76989 22.522 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76717 0.78551 31.809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88708 0.76989 NaN 1 0 Median 6882800 3598800 3284000 0 0 0 0 0 0 6538100 3431100 3107000 0 0 0 0 0 0 344720 167720 177010 17309 4426 18049 90012;90013;90014 91667 91667 1 KGFNSVATAR CPSIPGYGFSEASSKKGFNSVATARIFYKL EASSKKGFNSVATARIFYKLMLRLGFQEFY K K G A R I 2 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 1 0 0 10 1 1049.5618 P07099 P07099 197 206 EPHX1 Epoxide hydrolase 1 yes yes 2 0.021982 38.567 By matching By MS/MS By matching 1 1 1 1.454 1.3561 9.8428 3 Median 1.5322 1.5652 NaN 1 0 Median 1.454 1.3561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2074 1.2963 NaN 1 0 Median NaN NaN NaN 0 0 Median 2185500 973570 1211900 457580 204940 252640 837560 382290 455270 0 0 0 0 0 0 890330 386340 503990 0 0 0 17310 1879 18050 90015;90016;90017 91668 91668 1 KGFPHVIYAR TIQRTLDGRLQVAGRKGFPHVIYARLWRWP QVAGRKGFPHVIYARLWRWPDLHKNELKHV R K G A R L 1 1 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 0 0 10 1 1186.6611 K7ES96;K7EIU8;Q13485;K7EL15;K7EL18;K7EIJ2;K7ENG8 K7ES96 88 97 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 yes no 2;3 0.0013699 63.283 By MS/MS By MS/MS 4 2 0.58044 0.59951 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58044 0.59951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12095000 1560300 10535000 0 0 0 0 0 0 8751400 1560300 7191000 3344000 0 3344000 0 0 0 0 0 0 17311 1362 18051 90018;90019;90020;90021;90022;90023 91669;91670;91671;91672;91673;91674 91669 6 KGFSEGLWEIENNPTVK PYEESKEKFGKPNKRKGFSEGLWEIENNPT FSEGLWEIENNPTVKASGYQSSQKKSCVEE R K G V K A 0 0 2 0 0 0 3 2 0 1 1 2 0 1 1 1 1 1 0 1 0 0 17 1 1946.9738 P51858 P51858 80 96 HDGF Hepatoma-derived growth factor yes yes 2;3 5.6898E-08 97.551 By MS/MS By MS/MS By MS/MS By matching 1 5 5 2 0.89265 0.88961 36.536 13 Median 0.79588 0.74203 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78051 0.85054 42.487 5 0 Median 0.992 0.88961 8.7307 5 0 Median 1.3354 1.4108 35.31 2 0 Median NaN NaN NaN 0 0 Median 135050000 70541000 64508000 6036500 3308600 2727900 0 0 0 118200000 62299000 55899000 7370100 3567700 3802400 3443500 1365100 2078400 0 0 0 17312 2444 18052 90024;90025;90026;90027;90028;90029;90030;90031;90032;90033;90034;90035;90036 91675;91676;91677;91678;91679;91680;91681;91682;91683;91684 91683 10 KGGDGIKPPPIIGR GRDLVEGPQYLMPPKKGGDGIKPPPIIGRF KKGGDGIKPPPIIGRFGTSLKIGIVGLPNV K K G G R F 0 1 0 1 0 0 0 4 0 3 0 2 0 0 3 0 0 0 0 0 0 0 14 2 1403.8249 J3KQ32;Q9NTK5;C9JTK6 J3KQ32 25 38 OLA1 Obg-like ATPase 1 yes no 3 0.00029789 55.98 By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 0.70574 0.80895 16.583 6 Median 0.6547 0.71211 0.77737 2 0 Median 0.65582 0.78391 NaN 1 0 Median 0.74459 0.83479 NaN 1 0 Median 0.94443 0.98696 16.504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19070000 10663000 8406300 6843200 3895100 2948200 2819000 1652500 1166500 2403400 1314000 1089300 7004200 3801900 3202300 0 0 0 0 0 0 17313 1315 18053 90037;90038;90039;90040;90041;90042 91685;91686;91687;91688 91688 4 KGGFNRPLDFIA INVSQKRKYRQYMNRKGGFNRPLDFIA___ MNRKGGFNRPLDFIA_______________ R K G I A - 1 1 1 1 0 0 0 2 0 1 1 1 0 2 1 0 0 0 0 0 0 0 12 2 1333.7143 Q8WVK2;H0YBW5 Q8WVK2 144 155 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes no 2 0.054802 35.224 By MS/MS By matching 1 1 0.81275 0.78195 0.38456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74982 0.78408 NaN 1 0 Median 0.88095 0.77983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12399000 7214000 5185000 0 0 0 0 0 0 11911000 6953300 4957200 488470 260670 227810 0 0 0 0 0 0 17314 3502 18054 90043;90044 91689 91689 1 KGGKEFVEAVLELR ADIDLKDDLGNTLEKKGGKEFVEAVLELRK KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K K G L R K 1 1 0 0 0 0 3 2 0 0 2 2 0 1 0 0 0 0 0 2 0 0 14 2 1573.8828 O75367;B4DJC3 O75367 236 249 H2AFY Core histone macro-H2A.1;Histone H2A yes no 3 0.0046231 31.389 By MS/MS By matching 4 2 1.0963 1.2344 13.536 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0127 1.1758 15.07 4 0 Median 1.3919 1.2782 6.1089 2 0 Median 17746000 8184200 9561800 0 0 0 0 0 0 0 0 0 0 0 0 17150000 7940400 9209500 596250 243860 352390 17315 1662 18055 90045;90046;90047;90048;90049;90050 91690;91691;91692 91690 3 KGGPGSTLSFVGK PDQSAAAAGPGDPKRKGGPGSTLSFVGKRR KRKGGPGSTLSFVGKRRGGNKLALKTGIVA R K G G K R 0 0 0 0 0 0 0 4 0 0 1 2 0 1 1 2 1 0 0 1 0 0 13 1 1233.6717 Q9BQ61 Q9BQ61 106 118 C19orf43 Uncharacterized protein C19orf43 yes yes 2 8.8496E-07 113.93 By MS/MS By MS/MS 1 2 0.41216 0.37156 298.46 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99276 0.98726 NaN 1 0 Median 0.04147 0.037046 326.06 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122300000 108750000 13547000 0 0 0 0 0 0 20194000 8519800 11674000 102110000 100230000 1873300 0 0 0 0 0 0 17316 3783 18056 90051;90052;90053 91693;91694;91695;91696;91697 91694 5 KGGPGSTLSFVGKR PDQSAAAAGPGDPKRKGGPGSTLSFVGKRR RKGGPGSTLSFVGKRRGGNKLALKTGIVAK R K G K R R 0 1 0 0 0 0 0 4 0 0 1 2 0 1 1 2 1 0 0 1 0 0 14 2 1389.7728 Q9BQ61 Q9BQ61 106 119 C19orf43 Uncharacterized protein C19orf43 yes yes 3 0.00012891 71.513 By MS/MS By MS/MS 1 1 1.0102 0.97079 25 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0347 1.1585 NaN 1 0 Median 0.98623 0.81349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3926700 1955700 1970900 0 0 0 0 0 0 1695400 881460 813920 2231300 1074300 1157000 0 0 0 0 0 0 17317 3783 18057 90054;90055 91698;91699 91699 2 KGGSWIQEINVAEK EPSFDWKNFEQKMLKKGGSWIQEINVAEKN KKGGSWIQEINVAEKNWYPRQKICYAKRKL K K G E K N 1 0 1 0 0 1 2 2 0 2 0 2 0 0 0 1 0 1 0 1 0 0 14 1 1557.8151 P78527 P78527 4023 4036 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.09E-26 162.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 1.0108 0.94077 32.237 7 Median 0.95769 1.0426 19.7 2 1 Median 1.2479 1.1898 NaN 1 0 Median 0.58882 0.66592 42.811 2 1 Median 1.1209 1.09 20.817 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140610000 73662000 66944000 51204000 23403000 27801000 6744600 2967700 3776900 80806000 46518000 34288000 1851900 773600 1078300 0 0 0 0 0 0 17318 2647 18058 90056;90057;90058;90059;90060;90061;90062;90063 91700;91701;91702;91703;91704;91705;91706;91707;91708;91709 91705 10 KGHAVGDIPGVR FIEENDEVLVAGFGRKGHAVGDIPGVRFKV FGRKGHAVGDIPGVRFKVVKVANVSLLALY R K G V R F 1 1 0 1 0 0 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 12 1 1204.6677 P62266;D6RD47 P62266 108 119 RPS23 40S ribosomal protein S23 yes no 2;3 7.4484E-05 82.362 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 1 2 1 0.94791 0.92781 13.519 12 Median 0.95794 0.94491 7.5942 3 0 Plateau 1.0156 0.89648 11.376 3 0 Median 0.96755 1.0001 13.302 2 0 Median 1.0549 0.93383 NaN 1 0 Median 0.93947 1.0176 3.9318 2 0 Median 0.82863 0.66295 NaN 1 0 Median 59630000 29471000 30159000 16864000 8439400 8424500 35081000 17221000 17860000 5495600 2690100 2805500 991670 476850 514820 868970 487140 381830 328930 156750 172180 17319 2577 18059 90064;90065;90066;90067;90068;90069;90070;90071;90072;90073;90074;90075 91710;91711;91712;91713;91714;91715;91716;91717;91718;91719;91720;91721;91722 91717 13 KGHEENGDVVTEPQVAEK AAKKKEAAKARQRPRKGHEENGDVVTEPQV EENGDVVTEPQVAEKNEANGRETTEVDLLT R K G E K N 1 0 1 1 0 1 4 2 1 0 0 2 0 0 1 0 1 0 0 3 0 0 18 1 1964.9439 Q9UG63;C9JHK9;C9JZV3 Q9UG63 25 42 ABCF2 ATP-binding cassette sub-family F member 2 yes no 3;4 0.013823 19.292 By matching By MS/MS 1 2 0.76044 0.79046 12.903 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61616 0.70854 NaN 1 0 Median 0.85221 0.78689 16.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3408500 1963300 1445200 0 0 0 0 0 0 1275900 846040 429870 2132600 1117300 1015300 0 0 0 0 0 0 17320 4262 18060 90076;90077;90078 91723;91724;91725 91724 3 KGIDYDFPSLILQK RFKKKERLLRKKLAKKGIDYDFPSLILQKT KKGIDYDFPSLILQKTESISKTNRQTSTKG K K G Q K T 0 0 0 2 0 1 0 1 0 2 2 2 0 1 1 1 0 0 1 0 0 0 14 1 1635.8872 Q9BYG3;C9J808;C9J6C5 Q9BYG3 179 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 3 0.051186 11.692 By MS/MS By matching 1 2 1.0561 1.0356 14.614 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98356 1.0356 NaN 1 0 Median 1.2113 1.0419 20.661 2 0 Median 3748800 1703500 2045400 0 0 0 0 0 0 0 0 0 0 0 0 1795700 839660 956080 1953100 863820 1089300 17321 3891 18061 90079;90080;90081 91726 91726 1 KGIEHDNPISR SSLSLVEIYKQRCAKKGIEHDNPISRYYDR RCAKKGIEHDNPISRYYDRLATVQARGTQA K K G S R Y 0 1 1 1 0 0 1 1 1 2 0 1 0 0 1 1 0 0 0 0 0 0 11 1 1264.6524 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3593 3603 TRRAP Transformation/transcription domain-associated protein yes no 3 0.073226 8.1043 By MS/MS By matching 1 1 0.81828 0.84739 1.4119 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7434 0.85589 NaN 1 0 Median 0.9007 0.83897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 467580 244800 222790 0 0 0 0 0 0 340790 194820 145970 126790 49977 76814 0 0 0 0 0 0 17322 991 18062 90082;90083 91727 91727 1 KGIGPVYSSK QQRQEQAGKNLGTTKKGIGPVYSSKAARSG LGTTKKGIGPVYSSKAARSGLRMCDLVSDF K K G S K A 0 0 0 0 0 0 0 2 0 1 0 2 0 0 1 2 0 0 1 1 0 0 10 1 1034.576 P30520 P30520 164 173 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.0010183 86.898 By MS/MS 1 0.73536 0.69126 NaN 1 Median NaN NaN NaN 0 0 Median 0.73536 0.69126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2954100 1622000 1332100 0 0 0 2954100 1622000 1332100 0 0 0 0 0 0 0 0 0 0 0 0 17323 2195 18063 90084 91728 91728 1 KGIKEEVQLTSK EQIIELELKEEIKKKKGIKEEVQLTSKQKE KKKKGIKEEVQLTSKQKEMLQAQLDREAQV K K G S K Q 0 0 0 0 0 1 2 1 0 1 1 3 0 0 0 1 1 0 0 1 0 0 12 2 1358.7769 Q92616 Q92616 818 829 GCN1L1 Translational activator GCN1 yes yes 3 0.014544 26.13 By matching By MS/MS By matching By matching 1 1 1 1 1.0907 1.0846 13.067 4 Linear 1.0674 1.1687 NaN 1 0 Median 1.0247 1.1784 NaN 1 0 Median 0.86881 1.0066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86983 0.89705 NaN 1 0 Median 5606200 2390000 3216200 2789400 1049500 1739900 1495800 645100 850740 598660 303820 294850 0 0 0 0 0 0 722270 391540 330740 17324 3544 18064 90085;90086;90087;90088 91729 91729 1 KGISLNPEQWSQLK REYWMDPEGEMKPGRKGISLNPEQWSQLKE RKGISLNPEQWSQLKEQISDIDDAVRKL__ R K G L K E 0 0 1 0 0 2 1 1 0 1 2 2 0 0 1 2 0 1 0 0 0 0 14 1 1626.873 P53999 P53999 101 114 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2;3 0.00016997 79.82 By MS/MS By matching By MS/MS 2 1 1 0.91424 0.92754 11.119 4 Median 0.83354 0.84085 5.8135 2 1 Median 1.1652 1.0323 NaN 1 0 Median 0.96974 0.98196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17460000 8676000 8783500 6816700 3540600 3276000 393710 161620 232090 10249000 4973800 5275400 0 0 0 0 0 0 0 0 0 17325 2478 18065 90089;90090;90091;90092 91730;91731;91732 91730 3 KGISLNPEQWSQLKEQISDIDDAVR REYWMDPEGEMKPGRKGISLNPEQWSQLKE SQLKEQISDIDDAVRKL_____________ R K G V R K 1 1 1 3 0 3 2 1 0 3 2 2 0 0 1 3 0 1 0 1 0 0 25 2 2868.4618 P53999 P53999 101 125 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 3;4 3.3576E-08 41.084 By MS/MS 2 0.95657 1.102 25.121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95657 1.102 25.121 2 0 Median NaN NaN NaN 0 0 Median 4441500 2103500 2338000 0 0 0 0 0 0 0 0 0 0 0 0 4441500 2103500 2338000 0 0 0 17326 2478 18066 90093;90094 91733;91734 91733 2 KGIVDQSQQAYQEAFEISK DYYRYLAEVAAGDDKKGIVDQSQQAYQEAF DQSQQAYQEAFEISKKEMQPTHPIRLGLAL K K G S K K 2 0 0 1 0 4 2 1 0 2 0 2 0 1 0 2 0 0 1 1 0 0 19 1 2168.075 P63104;B0AZS6;B7Z2E6;H0YB80 P63104 139 157 YWHAZ 14-3-3 protein zeta/delta yes no 3 1.7177E-13 100.02 By MS/MS By MS/MS 1 2 0.96853 0.98334 32.163 3 Median 0.96853 0.98334 NaN 1 0 Median 0.89775 0.79845 42.187 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27394000 14279000 13115000 24962000 13107000 11855000 2431600 1171700 1259900 0 0 0 0 0 0 0 0 0 0 0 0 17327 2618 18067 90095;90096;90097 91735;91736;91737 91735 3 KGKEDEGEEAASPMLQIQR SIPLDEGEDEAQRRRKGKEDEGEEAASPML DEGEEAASPMLQIQRDAATIMQPYFTSNGL R K G Q R D 2 1 0 1 0 2 4 2 0 1 1 2 1 0 1 1 0 0 0 0 0 0 19 2 2115.0266 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2399 2417 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 4 5.2491E-09 84.829 By MS/MS By matching By matching 1 1 1 0.88063 1.0539 12.498 3 Median 0.88063 0.95835 NaN 1 0 Median 1.1524 1.2278 NaN 1 0 Median 0.79422 1.0539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22508000 10926000 11582000 10739000 5669900 5068600 8072100 3112500 4959600 3697800 2143900 1553800 0 0 0 0 0 0 0 0 0 17328 2865 18068 90098;90099;90100 91738;91739 91738 2 KGLDPYNVLAPK EQATGLEREIMLAAKKGLDPYNVLAPKGAS AAKKGLDPYNVLAPKGASGTREDPNLVPSI K K G P K G 1 0 1 1 0 0 0 1 0 0 2 2 0 0 2 0 0 0 1 1 0 0 12 1 1313.7343 P10606 P10606 57 68 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2;3 1.1296E-06 167.09 By MS/MS By MS/MS By MS/MS 2 2 2 0.67255 0.65824 22.252 6 Median 0.63765 0.59714 4.5591 2 0 Median 1.0484 0.90883 4.4098 2 0 Median 0.61072 0.62246 17.122 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201400000 110270000 91125000 86567000 53802000 32766000 105730000 50869000 54864000 9097600 5602100 3495500 0 0 0 0 0 0 0 0 0 17329 1943 18069 90101;90102;90103;90104;90105;90106 91740;91741;91742;91743;91744;91745;91746;91747;91748;91749;91750;91751;91752;91753;91754 91746 15 KGLIPWEQAAR DPFSGKQVSVFQAMKKGLIPWEQAARLLEA QAMKKGLIPWEQAARLLEAQVATGGIIDPT K K G A R L 2 1 0 0 0 1 1 1 0 1 1 1 0 0 1 0 0 1 0 0 0 0 11 1 1267.7037 P58107;A0A075B730 P58107 1028 1038 EPPK1 Epiplakin yes no 3 0.0088834 45.829 By MS/MS 1 1.2066 1.2407 NaN 1 Median 1.2066 1.2407 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4170800 1794800 2376000 4170800 1794800 2376000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17330 2520 18070 90107 91755 91755 1 KGLPLGSAVSSPVLFSPVGR LAGLGPGSTPRTASRKGLPLGSAVSSPVLF GSAVSSPVLFSPVGRRSSLSSRGTPTRMFP R K G G R R 1 1 0 0 0 0 0 3 0 0 3 1 0 1 3 4 0 0 0 3 0 0 20 1 1967.1204 Q8WUM0 Q8WUM0 35 54 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 5.8973E-09 76.301 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.8615 0.84396 42.599 6 Median 1.0955 1.1399 NaN 1 0 Median 1.9883 1.8777 NaN 1 0 Median 0.57089 0.64732 16.831 2 0 Median 0.8615 0.82791 23.397 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45033000 25690000 19343000 4606700 2155700 2451000 2784200 828560 1955600 35481000 21587000 13894000 2161000 1118900 1042100 0 0 0 0 0 0 17331 3492 18071 90108;90109;90110;90111;90112;90113 91756;91757;91758;91759;91760;91761 91756 6 KGLPWTLAK CLDMTARDVQDECKKKGLPWTLAKSFTASC QDECKKKGLPWTLAKSFTASCPVSAFVPKE K K G A K S 1 0 0 0 0 0 0 1 0 0 2 2 0 0 1 0 1 1 0 0 0 0 9 1 1012.607 Q6P587 Q6P587 115 123 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2 0.0039164 69.812 By MS/MS By MS/MS 1 1 1.0827 1.026 26.218 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85467 0.85238 NaN 1 0 Median 1.3715 1.235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10465000 4873500 5592000 0 0 0 0 0 0 6790800 3313300 3477500 3674600 1560200 2114500 0 0 0 0 0 0 17332 3160 18072 90114;90115 91762;91763 91762 2 KGLSEDVSISK APHLAREFMIKTRRRKGLSEDVSISKFFDD TRRRKGLSEDVSISKFFDDPMLLELAKQDV R K G S K F 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 3 0 0 0 1 0 0 11 1 1161.6241 Q15029;K7EP67 Q15029 941 951 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0001914 143.97 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.98246 0.99378 9.0608 5 Median NaN NaN NaN 0 0 Median 1.0778 1.0019 NaN 1 0 Median 0.86946 0.99378 NaN 1 0 Median 1.1357 1.0819 NaN 1 0 Median 0.77693 0.86883 NaN 1 0 Median 0.98246 0.89034 NaN 1 0 Median 13240000 6019200 7220600 0 0 0 6513200 2706300 3807000 1077900 635860 442040 3596100 1633300 1962800 1428200 715420 712790 624280 328290 295990 17333 2917 18073 90116;90117;90118;90119;90120 91764;91765;91766;91767 91766 4 KGLSSDLEGEKTTSLK CQAKSTPVIVSATTKKGLSSDLEGEKTTSL GLSSDLEGEKTTSLKWKSDEVDEQVACQEV K K G L K W 0 0 0 1 0 0 2 2 0 0 3 3 0 0 0 3 2 0 0 0 0 0 16 2 1691.8941 Q02952 Q02952 1494 1509 AKAP12 A-kinase anchor protein 12 yes yes 3 0.0011627 35.492 By MS/MS 2 1.1678 1.328 5.9147 2 Median 1.1678 1.328 5.9147 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11152000 4763800 6388000 11152000 4763800 6388000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17334 2705 18074 90121;90122 91768 91768 1 KGLTPSQIGVILR LTSDDVKEQIYKLAKKGLTPSQIGVILRDS AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K K G L R D 0 1 0 0 0 1 0 2 0 2 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1380.8453 P62277;J3KMX5 P62277 43 55 RPS13 40S ribosomal protein S13 yes no 2;3 1.3636E-17 193.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 3 2 3 1 0.99693 1.0017 10.797 16 Median 0.97062 0.94359 5.381 5 0 Median 1.0361 0.91447 9.2248 3 0 Median 1.0223 1.0629 3.863 3 0 Median 1.2677 1.1222 6.7568 2 0 Median 1.0671 1.2054 13.131 3 0 Plateau NaN NaN NaN 0 0 Median 432200000 213700000 218500000 371840000 184160000 187680000 18926000 9105800 9820000 13999000 6824200 7174300 1895200 849460 1045800 25544000 12757000 12786000 0 0 0 17335 2580 18075 90123;90124;90125;90126;90127;90128;90129;90130;90131;90132;90133;90134;90135;90136;90137;90138;90139 91769;91770;91771;91772;91773;91774;91775;91776;91777;91778;91779;91780;91781;91782;91783;91784;91785;91786;91787;91788;91789;91790;91791;91792;91793;91794;91795 91772 27 KGLVDRPLALR DPFSGSQIPLFQAMKKGLVDRPLALRLLDA QAMKKGLVDRPLALRLLDAQLATGGLVCPA K K G L R L 1 2 0 1 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 11 2 1236.7666 P58107;A0A075B730 P58107 383 393 EPPK1 Epiplakin yes no 3 0.00074079 54.471 By MS/MS By MS/MS 2 2 1.0247 1.0308 8.3592 4 Median 1.0061 0.99819 7.8118 2 0 Median 1.03 1.0773 9.5083 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22068000 10815000 11253000 8579800 4079000 4500800 13488000 6736200 6751800 0 0 0 0 0 0 0 0 0 0 0 0 17336 2520 18076 90140;90141;90142;90143 91796;91797 91796 2 KGLVGPELHDR DPVKGERLTVDEAVRKGLVGPELHDRLLSA EAVRKGLVGPELHDRLLSAERAVTGYRDPY R K G D R L 0 1 0 1 0 0 1 2 1 0 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1219.6673 Q15149;H0YDN1 Q15149 3887 3897 PLEC Plectin yes no 3 8.7184E-05 71.176 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 2 1 1 1.0358 1.0304 18.619 8 Median 0.99108 1.0143 NaN 1 0 Median 1.0862 1.0292 2.3906 2 0 Median 1.0224 1.18 NaN 1 0 Median 1.0268 0.97365 29.951 2 0 Median 0.6431 0.72925 NaN 1 0 Median 1.3176 1.1601 NaN 1 0 Median 13294000 6253500 7040300 2534000 1160600 1373400 6457300 3000300 3457100 1114700 481890 632800 1267700 449440 818280 1455400 946380 509050 464690 214960 249740 17337 2933 18077 90144;90145;90146;90147;90148;90149;90150;90151 91798;91799;91800;91801;91802;91803;91804;91805 91800 8 KGLVNDLAR TQHNGMNNIIRLFLKKGLVNDLARVPHSLD IRLFLKKGLVNDLARVPHSLDLSSPNMANT K K G A R V 1 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 984.57163 Q7Z6Z7 Q7Z6Z7 2219 2227 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.0087344 56.729 By MS/MS By MS/MS 2 1 1.035 1.0097 7.0919 2 Median 1.0417 1.0617 NaN 1 1 Median 1.0283 0.96035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6077500 2886100 3191400 1735200 798720 936460 4342300 2087400 2254900 0 0 0 0 0 0 0 0 0 0 0 0 17338 3253 18078 90152;90153;90154 91806;91807;91808;91809 91809 4 KGLYMANDLK IMKDSGNKPPGLLPRKGLYMANDLKLLRHH GLLPRKGLYMANDLKLLRHHLQIPIHFPKD R K G L K L 1 0 1 1 0 0 0 1 0 0 2 2 1 0 0 0 0 0 1 0 0 0 10 1 1151.6009 Q9Y2Q3;E9PFN5;C9JNT3 Q9Y2Q3 62 71 GSTK1 Glutathione S-transferase kappa 1 yes no 2 7.4268E-05 135.55 By MS/MS By MS/MS By MS/MS 1 1 1 0.96201 0.96034 20.024 3 Median 0.9026 0.91809 NaN 1 0 Median 1.4499 1.3254 NaN 1 0 Median 0.96201 0.96034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17412000 8369400 9042700 7880700 4238400 3642300 4798200 1912100 2886200 4733200 2218900 2514300 0 0 0 0 0 0 0 0 0 17339 4386 18079 90155;90156;90157 91810;91811;91812;91813 91810 4 KGMLDPLEVHLLDFPNIVIK SLPVEEQPKQIIVTRKGMLDPLEVHLLDFP PLEVHLLDFPNIVIKGSELQLPFQACLKVE R K G I K G 0 0 1 2 0 0 1 1 1 2 4 2 1 1 2 0 0 0 0 2 0 0 20 1 2290.2759 Q6P2Q9 Q6P2Q9 1866 1885 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 4.8955E-06 46.362 By MS/MS 2 0.85874 0.83549 4.9361 2 Median NaN NaN NaN 0 0 Median 0.85874 0.83549 4.9361 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3070600 1594700 1475900 0 0 0 3070600 1594700 1475900 0 0 0 0 0 0 0 0 0 0 0 0 17340 3157 18080 90158;90159 91814;91815 91815 2 KGNFNYIEFTR DEEVDELYREAPIDKKGNFNYIEFTRILKH PIDKKGNFNYIEFTRILKHGAKDKDD____ K K G T R I 0 1 2 0 0 0 1 1 0 1 0 1 0 2 0 0 1 0 1 0 0 0 11 1 1387.6884 J3QRS3;P19105;O14950 J3QRS3 156 166 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2;3 5.0177E-05 99.568 By MS/MS By MS/MS By matching 2 1 2 1.2865 1.2275 43.33 5 Median 1.5126 1.4903 27.439 2 0 Median 1.2865 1.135 NaN 1 0 Median 1.3769 1.4022 79.071 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35477000 15103000 20373000 31483000 13279000 18204000 2008300 997680 1010600 1985600 827070 1158500 0 0 0 0 0 0 0 0 0 17341 1352 18081 90160;90161;90162;90163;90164 91816;91817;91818;91819;91820;91821 91817 6 KGNTALHIASLAGQAEVVK SELLQREANVDAATKKGNTALHIASLAGQA ALHIASLAGQAEVVKVLVTNGANVNAQSQN K K G V K V 4 0 1 0 0 1 1 2 1 1 2 2 0 0 0 1 1 0 0 2 0 0 19 1 1906.0636 Q12955;D6RHY3;A0A087X0B4;D6R9U4;I6L894;Q01484;E9PHW9;A0A0U1RQN6;D6RHE1;B7Z651 Q12955 106 124 ANK3;ANK2 Ankyrin-3;Ankyrin-2 no no 3 0.063979 14.928 By matching By MS/MS By matching 1 1 1 0.73384 0.84727 42.287 3 Median 0.9393 0.93771 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73384 0.84727 NaN 1 0 Median 0.46156 0.43077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9643100 5470000 4173100 3409200 1764300 1644800 0 0 0 5350400 3025500 2325000 883460 680190 203270 0 0 0 0 0 0 17342 2773;1297 18082 90165;90166;90167 91822 91822 0 KGPAPELQGVEVALAPEELELDPMAMTQK MGSTHIYDMSTVMSRKGPAPELQGVEVALA APEELELDPMAMTQKYEEHVREQQAQVEKE R K G Q K Y 4 0 0 1 0 2 5 2 0 0 4 2 2 0 4 0 1 0 0 2 0 0 29 1 3090.5617 Q13435;E9PPJ0;H0YEX5 Q13435 815 843 SF3B2 Splicing factor 3B subunit 2 yes no 3 4.4935E-14 63.085 By MS/MS 1 0.42382 0.47484 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42382 0.47484 NaN 1 1 Median NaN NaN NaN 0 0 Median 5338500 4181600 1156900 0 0 0 0 0 0 0 0 0 0 0 0 5338500 4181600 1156900 0 0 0 17343 2817 18083 90168 91823 91823 1 KGPEAAGAAAAQQGGYEIPAR RDSLASLFPSEEEERKGPEAAGAAAAQQGG GAAAAQQGGYEIPARLRTLHNLVIQYAGQG R K G A R L 7 1 0 0 0 2 2 4 0 1 0 1 0 0 2 0 0 0 1 0 0 0 21 1 2012.0076 Q6P597;K7ENJ3;K7EL76 Q6P597 186 206 KLC3 Kinesin light chain 3 yes no 3 5.6102E-09 53.779 By MS/MS 2 0.79321 0.79861 1.3233 2 Median 0.79321 0.79861 1.3233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12683000 7579200 5103600 12683000 7579200 5103600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17344 3161 18084 90169;90170 91824 91824 1 KGPEADSEWR KDSRWGDRDSEGTWRKGPEADSEWRRGPPE EGTWRKGPEADSEWRRGPPEKEWRRGEGRD R K G W R R 1 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 10 1 1173.5415 Q14152 Q14152 901 910 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.021982 38.567 By MS/MS 2 0.87045 0.82547 6.2524 2 Median NaN NaN NaN 0 0 Median 0.87045 0.82547 6.2524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5137400 2444900 2692500 0 0 0 5137400 2444900 2692500 0 0 0 0 0 0 0 0 0 0 0 0 17345 2860 18085 90171;90172 91825;91826 91826 2 KGPELPLVPVK ______________________________ QQKRKGPELPLVPVKRQRHELLLGAGSGPG R K G V K R 0 0 0 0 0 0 1 1 0 0 2 2 0 0 3 0 0 0 0 2 0 0 11 1 1175.7278 Q96DI7 Q96DI7 8 18 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 0.014604 38.567 By matching By MS/MS 1 1 0.63653 0.63514 7.4633 2 Median NaN NaN NaN 0 0 Median 0.73283 0.66955 NaN 1 0 Median 0.55288 0.60249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4772700 2841100 1931600 0 0 0 157160 91097 66064 4615600 2750000 1865500 0 0 0 0 0 0 0 0 0 17346 3627 18086 90173;90174 91827 91827 1 KGPELPLVPVKR ______________________________ QKRKGPELPLVPVKRQRHELLLGAGSGPGA R K G K R Q 0 1 0 0 0 0 1 1 0 0 2 2 0 0 3 0 0 0 0 2 0 0 12 2 1331.8289 Q96DI7 Q96DI7 8 19 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2;3 9.4439E-06 96.64 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 4 2 0.62327 0.66758 11.411 10 Median 0.65345 0.69185 NaN 1 0 Median 0.5853 0.69962 NaN 1 0 Median 0.56799 0.64001 0.00048315 2 0 Median 0.83926 0.83952 NaN 1 0 Median 0.59447 0.69291 16.923 3 0 Median 0.69546 0.64085 0.73244 2 0 Median 84673000 53745000 30929000 3004600 1826000 1178600 2677500 1868300 809230 37089000 24640000 12450000 7093700 3542200 3551500 26957000 17513000 9443500 7851400 4355200 3496100 17347 3627 18087 90175;90176;90177;90178;90179;90180;90181;90182;90183;90184;90185 91828;91829;91830;91831;91832;91833;91834;91835;91836;91837;91838;91839;91840;91841;91842 91830 15 KGPGLAVQSGDK KGKRINVELSTKGQKKGPGLAVQSGDKTKK GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG K K G D K T 1 0 0 1 0 1 0 3 0 0 1 2 0 0 1 1 0 0 0 1 0 0 12 1 1155.6248 Q96PK6 Q96PK6 153 164 RBM14 RNA-binding protein 14 yes yes 2 0.0040932 47.559 By matching By MS/MS 2 2 1.0197 1.1137 19.837 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.216 1.3209 24.854 2 0 Median NaN NaN NaN 0 0 Median 0.97957 1.057 8.1142 2 0 Median NaN NaN NaN 0 0 Median 3895300 1922000 1973300 0 0 0 0 0 0 1795400 826410 969010 0 0 0 2099900 1095600 1004300 0 0 0 17348 3712 18088 90186;90187;90188;90189 91843 91843 1 KGPNVVGPYGLLQPFADAMK LMLTERKILGYMQLRKGPNVVGPYGLLQPF VGPYGLLQPFADAMKLFTKEPLKPATSTIT R K G M K L 2 0 1 1 0 1 0 3 0 0 2 2 1 1 3 0 0 0 1 2 0 0 20 1 2101.103 P03886 P03886 35 54 MT-ND1 NADH-ubiquinone oxidoreductase chain 1 yes yes 3 2.1456E-07 52.784 By MS/MS By matching By matching 1 1 1 0.59196 0.64175 31.887 3 Median 0.59196 0.64175 NaN 1 0 Median 1.1252 1.0683 NaN 1 0 Median 0.51783 0.59408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4547700 2599500 1948100 3459600 2125700 1333900 887280 344340 542930 200850 129510 71341 0 0 0 0 0 0 0 0 0 17349 1839 18089 90190;90191;90192 91844;91845 91845 2 KGPQGYGFNLHSDK SGPLRELRPRLCHLRKGPQGYGFNLHSDKS RKGPQGYGFNLHSDKSRPGQYIRSVDPGSP R K G D K S 0 0 1 1 0 1 0 3 1 0 1 2 0 1 1 1 0 0 1 0 0 0 14 1 1546.7528 Q15599;H3BUQ9;H3BN50;H3BQS0 Q15599 156 169 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 3 0.025251 19.075 By matching By MS/MS 1 1 0.90138 0.89728 40.081 2 Median NaN NaN NaN 0 0 Median 0.74323 0.67583 NaN 1 0 Median 1.0932 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3277200 1338900 1938300 0 0 0 761120 309650 451460 2516100 1029300 1486800 0 0 0 0 0 0 0 0 0 17350 2958 18090 90193;90194 91846 91846 1 KGPQSLFNAPR LPKGISAGAVQTAGKKGPQSLFNAPRGKKR TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K K G P R G 1 1 1 0 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 11 1 1213.6568 P46087;F5GWB7;F5H709;F5H5X6 P46087 92 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes no 3 0.039324 25.474 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17351 2338 18091 90195 91847 91847 1 KGPSTVTDLEDTKR FPERESSILAKLKKKKGPSTVTDLEDTKRD KKGPSTVTDLEDTKRDRSVDVNGGPEPAPA K K G K R D 0 1 0 2 0 0 1 1 0 0 1 2 0 0 1 1 3 0 0 1 0 0 14 2 1545.7999 O94973;A0A0G2JS82;A0A0G2JQM1 O94973 619 632 AP2A2 AP-2 complex subunit alpha-2 yes no 3 0.00049666 48.177 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.92486 1.0672 20.32 4 Median 0.63542 0.72225 NaN 1 0 Median 1.0451 1.1061 NaN 1 0 Median 0.83293 1.0376 NaN 1 0 Median 1.027 1.0977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6594000 3193600 3400400 1930400 1165700 764750 2209700 950790 1258900 1557000 664420 892560 896910 412720 484190 0 0 0 0 0 0 17352 1741 18092 90196;90197;90198;90199 91848;91849;91850;91851 91849 4 KGQEEIVTLHAEIK RKVQDSNAEILANYRKGQEEIVTLHAEIKA RKGQEEIVTLHAEIKAQKKELDTIQECIKV R K G I K A 1 0 0 0 0 1 3 1 1 2 1 2 0 0 0 0 1 0 0 1 0 0 14 1 1593.8726 F5H2B9;H0YNH8;Q9BZF9 F5H2B9 846 859 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.00019834 58.885 By matching By MS/MS 1 1 1.0435 1.0816 20.93 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81473 0.9328 NaN 1 0 Median 1.3364 1.2541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6307600 3096700 3210900 0 0 0 0 0 0 3913300 2070100 1843200 2394300 1026600 1367800 0 0 0 0 0 0 17353 1026 18093 90200;90201 91852;91853 91852 2 KGQGGAGAGDDEEED YGGGRPGRVKRKNAKKGQGGAGAGDDEEED KGQGGAGAGDDEEED_______________ K K G E D - 2 0 0 3 0 1 3 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 15 1 1433.5543 P46781 P46781 180 194 RPS9 40S ribosomal protein S9 yes yes 2 5.0614E-09 127.42 By MS/MS By matching By MS/MS 1 1 1 1.2706 1.0445 13.184 3 Median NaN NaN NaN 0 0 Median 1.0036 0.8409 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2963 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2706 1.0672 NaN 1 0 Median 9458100 4419000 5039100 0 0 0 8536800 4019700 4517100 0 0 0 137680 71784 65898 0 0 0 783540 327470 456070 17354 2345 18094 90202;90203;90204 91854;91855;91856;91857;91858;91859;91860 91854 7 KGQTHTLEDFQR NCAGIAVASKTYNLKKGQTHTLEDFQRVLD NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K K G Q R V 0 1 0 1 0 2 1 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 12 1 1458.7215 Q99714;Q5H928 Q99714 105 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 3 0.0091708 44.616 By MS/MS By MS/MS 1 1 0.32439 0.33655 69.837 2 Median 0.1968 0.20539 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.5347 0.55146 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19057000 14388000 4669300 16011000 12626000 3384200 0 0 0 3046200 1761100 1285100 0 0 0 0 0 0 0 0 0 17355 3764 18095 90205;90206 91861;91862 91861 2 KGQVIQF IKRCKHFELGGDKKRKGQVIQF________ ELGGDKKRKGQVIQF_______________ R K G Q F - 0 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 1 818.46504 J3KQN4;Q969Q0;P83881;R4GN19 J3KQN4 136 142 RPL36A;RPL36AL 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 0.025356 64.563 By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1.2137 1.0362 37.026 7 Median 1.2547 1.1812 NaN 1 0 Median 1.2137 1.0362 10.155 3 0 Plateau NaN NaN NaN 0 0 Median 1.1613 0.9579 NaN 1 0 Median 1.8576 2.5846 NaN 1 0 Median 1.348 1.0403 NaN 1 0 Median 53713000 23712000 30001000 24967000 10855000 14112000 26695000 12044000 14651000 0 0 0 681620 307780 373840 874540 302730 571810 493450 201600 291860 17356 1321 18096 90207;90208;90209;90210;90211;90212;90213 91863;91864;91865 91864 3 KGRPMVISSGMQSMDTMK SGDTNNFPYLEKTAKKGRPMVISSGMQSMD PMVISSGMQSMDTMKQVYQIVKPLNPNFCF K K G M K Q 0 1 0 1 0 1 0 2 0 1 0 2 4 0 1 3 1 0 0 1 0 0 18 2 1982.941 Q9NR45 Q9NR45 149 166 NANS Sialic acid synthase yes yes 3 6.4928E-07 82.482 By MS/MS 1 0.84508 0.89473 NaN 1 Median 0.84508 0.89473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13681000 7776100 5904900 13681000 7776100 5904900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17357 4079 18097 90214 91866 91866 1 KGSAGDGFHGDVYLTVK PSYNTKTQIIQDFLRKGSAGDGFHGDVYLT SAGDGFHGDVYLTVKLLLPGVIKTVYNLND R K G V K L 1 0 0 2 0 0 0 4 1 0 1 2 0 1 0 1 1 0 1 2 0 0 17 1 1749.8686 P49916;K7ERZ5;K7EQB6 P49916 292 308 LIG3 DNA ligase 3 yes no 3 6.5876E-06 56.215 By MS/MS By MS/MS 1 1 1.0317 1.0755 4.4448 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91359 1.0422 NaN 1 0 Median 1.1651 1.1098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25376000 12166000 13210000 0 0 0 0 0 0 17286000 8255700 9030000 8089800 3909800 4180000 0 0 0 0 0 0 17358 2406 18098 90215;90216 91867;91868;91869 91869 3 KGSEHQAIVQHLEK SLHQDLVNRKARKLRKGSEHQAIVQHLEKS RKGSEHQAIVQHLEKSFAIASLVETGHLAA R K G E K S 1 0 0 0 0 2 2 1 2 1 1 2 0 0 0 1 0 0 0 1 0 0 14 1 1602.8478 Q14690;A0A3B3IUD7 Q14690 924 937 PDCD11 Protein RRP5 homolog yes no 4 0.055167 10.944 By matching By MS/MS By matching By matching 1 3 1 2 1.132 1.1823 10.005 7 Median NaN NaN NaN 0 0 Median 1.4194 1.3924 NaN 1 0 Median 0.96022 1.0912 7.8508 3 0 Median NaN NaN NaN 0 0 Median 1.132 1.1823 NaN 1 0 Median 1.3375 1.2083 4.8598 2 0 Median 4383000 1962700 2420300 0 0 0 432440 150140 282300 2300200 1181700 1118500 0 0 0 979350 353380 625970 671040 277460 393590 17359 448 18099 90217;90218;90219;90220;90221;90222;90223 91870;91871 91870 2 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR ATDMGTMQERITTTKKGSITSVQAIYVPAD ATTFAHLDATTVLSRAIAELGIYPAVDPLD K K G S R A 6 1 0 4 0 1 0 1 1 2 3 1 0 1 3 3 6 0 1 3 0 0 37 1 3841.9738 P06576;H0YH81;H0YI37 P06576 351 387 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 4 0.0037659 23.477 By MS/MS 1 0.81699 0.74638 NaN 1 Median NaN NaN NaN 0 0 Median 0.81699 0.74638 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2640800 1851100 789620 0 0 0 2640800 1851100 789620 0 0 0 0 0 0 0 0 0 0 0 0 17360 1872 18100 90224 91872 91872 1 KGSLESPATDVFGSTEEGEKR MRWSTLVEDYGMELRKGSLESPATDVFGST PATDVFGSTEEGEKRWKDLKNRVVEHNIRI R K G K R W 1 1 0 1 0 0 4 3 0 0 1 2 0 1 1 3 2 0 0 1 0 0 21 2 2223.0655 O00232 O00232 330 350 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 4 4.6708E-12 72.644 By MS/MS By matching 1 1 1.2705 1.4466 22.348 2 Median 1.1054 1.2352 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4603 1.6943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13475000 7079400 6395900 8873400 4834500 4038900 0 0 0 4601900 2244900 2357000 0 0 0 0 0 0 0 0 0 17361 1449 18101 90225;90226 91873 91873 1 KGSLLVAR SIYSFHCEYVSSLSKKGSLLVARTQPSPWQ YVSSLSKKGSLLVARTQPSPWQMMLQDFQI K K G A R T 1 1 0 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 1 842.53379 Q15904;A0A0C4DGX8 Q15904 380 387 ATP6AP1 V-type proton ATPase subunit S1 yes no 2 0.04831 38.16 By matching By MS/MS By matching 2 4 1 1.3163 1.2093 19.486 7 Median 1.3818 1.4098 21.694 2 0 Median 1.2924 1.16 23.923 4 0 Median 1.335 1.3548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7886900 3346700 4540200 1037500 498210 539320 6472300 2698000 3774300 377110 150510 226610 0 0 0 0 0 0 0 0 0 17362 257 18102 90227;90228;90229;90230;90231;90232;90233 91874;91875;91876 91874 3 KGSVVNVNPTNTRPQSDTPEIR CDGMRPEAIRQDPTRKGSVVNVNPTNTRPQ NPTNTRPQSDTPEIRKYKKRFNSEILCAAL R K G I R K 0 2 3 1 0 1 1 1 0 1 0 1 0 0 3 2 3 0 0 3 0 0 22 2 2408.2408 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;E7EN19;A0A0D9SEY1;O95819 C9J840 646 667 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 yes no 4 0.038578 20.032 By MS/MS 1 0.65338 0.63032 NaN 1 Median 0.65338 0.63032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4212700 2358000 1854700 4212700 2358000 1854700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17363 262 18103 90234 91877 91877 0 KGTDIMYTGTLDCWR PFDTVRRRMMMQSGRKGTDIMYTGTLDCWR KGTDIMYTGTLDCWRKIARDEGGKAFFKGA R K G W R K 0 1 0 2 1 0 0 2 0 1 1 1 1 0 0 0 3 1 1 0 0 0 15 1 1815.8284 P05141 P05141 245 259 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2;3 0.010381 44.765 By matching By MS/MS By matching 1 3 1 1.5969 1.4864 20.61 5 Median 1.0165 1.0505 NaN 1 0 Median 1.5969 1.4864 9.7848 3 1 Median 1.6184 1.7902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29146000 11972000 17174000 7185900 3491800 3694100 21195000 8212400 12983000 764620 267630 497000 0 0 0 0 0 0 0 0 0 17364 1861 18104 90235;90236;90237;90238;90239 91878;91879;91880 91880 3 KGTDVNVFNTILTTR ADSDARALYEAGERRKGTDVNVFNTILTTR KGTDVNVFNTILTTRSYPQLRRVFQKYTKY R K G T R S 0 1 2 1 0 0 0 1 0 1 1 1 0 1 0 0 4 0 0 2 0 0 15 1 1677.905 P04083 P04083 214 228 ANXA1 Annexin A1 yes yes 2;3 5.1006E-19 184.21 By MS/MS By MS/MS By MS/MS By matching 3 6 2 1 1.2046 1.1079 22.772 12 Median 1.4113 1.5126 19.624 3 0 Median 1.2046 1.0957 14.557 6 0 Median 1.0231 1.1428 46.569 2 0 Median 1.0792 0.95481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104970000 44553000 60419000 63127000 26317000 36809000 35564000 16174000 19390000 5985800 1917100 4068700 295870 144670 151200 0 0 0 0 0 0 17365 1844 18105 90240;90241;90242;90243;90244;90245;90246;90247;90248;90249;90250;90251 91881;91882;91883;91884;91885;91886;91887;91888;91889;91890 91884 10 KGTEVQVDDIKR AIQLITAASLVCRKRKGTEVQVDDIKRVYS RKRKGTEVQVDDIKRVYSLFLDESRSTQYM R K G K R V 0 1 0 2 0 1 1 1 0 1 0 2 0 0 0 0 1 0 0 2 0 0 12 2 1386.7467 Q9Y230 Q9Y230 417 428 RUVBL2 RuvB-like 2 yes yes 3 0.00018031 75.479 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.0533 1.1704 21.61 6 Median 1.3552 1.5143 NaN 1 0 Median 1.4767 1.5131 NaN 1 0 Median 1.0082 1.1698 NaN 1 0 Median 0.96212 1.0371 17.185 2 0 Median 0.83134 0.951 NaN 1 0 Median NaN NaN NaN 0 0 Median 14415000 5988900 8426000 2305200 909920 1395300 5233000 1946000 3286900 3364700 1613200 1751500 2051100 808380 1242700 1460800 711330 749500 0 0 0 17366 4368 18106 90252;90253;90254;90255;90256;90257 91891;91892;91893;91894;91895;91896 91895 6 KGTGIAAQTAGIAAAAR LAFASCGTEGFRNAKKGTGIAAQTAGIAAA TGIAAQTAGIAAAARAKQKGVIHIRVVVKG K K G A R A 7 1 0 0 0 1 0 3 0 2 0 1 0 0 0 0 2 0 0 0 0 0 17 1 1526.8529 P82912 P82912 122 138 MRPS11 28S ribosomal protein S11, mitochondrial yes yes 2;3 4.596E-12 125.61 By MS/MS By MS/MS By MS/MS 2 1 1 1.1931 1.1142 28.334 4 Median 0.99334 0.98076 2.7811 2 0 Median 1.4066 1.2411 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0165 1.7851 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26745000 12267000 14478000 21363000 10402000 10961000 2832000 1121500 1710500 0 0 0 2550400 743440 1807000 0 0 0 0 0 0 17367 2655 18107 90258;90259;90260;90261 91897;91898;91899;91900;91901;91902;91903 91899 7 KGTGVVQPLPAAQTVTVSQGSQTEAESAAAK GQLPSSGMGGGSCPRKGTGVVQPLPAAQTV VSQGSQTEAESAAAKKAEADGSGQQNVGMN R K G A K K 6 0 0 0 0 4 2 3 0 0 1 2 0 0 2 3 4 0 0 4 0 0 31 1 3010.5571 P78364;J3KQH6 P78364 307 337 PHC1 Polyhomeotic-like protein 1 yes no 3 1.68E-48 117.22 By MS/MS By matching By matching 1 1 1 0.9258 0.88189 23.793 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53125 0.6156 NaN 1 0 Median 0.9258 0.88189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0585 0.96523 NaN 1 0 Median 15366000 8935300 6430300 0 0 0 0 0 0 13381000 7861300 5519700 1771200 966300 804910 0 0 0 213370 107710 105660 17368 1318 18108 90262;90263;90264 91904;91905 91905 2 KGTHFNFAIVFTDVK ELTSLVKEVYPEARKKGTHFNFAIVFTDVK KGTHFNFAIVFTDVKRPGYRVKEIGSTMSG K K G V K R 1 0 1 1 0 0 0 1 1 1 0 2 0 3 0 0 2 0 0 2 0 0 15 1 1722.9093 O00422;H7BZW6;U3KPY7 O00422 83 97 SAP18 Histone deacetylase complex subunit SAP18 yes no 3 0.01125 23.481 By MS/MS By matching 1 1 1.1647 1.147 7.2164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0498 1.207 NaN 1 0 Median 1.2921 1.0899 NaN 1 0 Median 4020400 2397800 1622600 0 0 0 0 0 0 0 0 0 0 0 0 3702700 2278000 1424600 317760 119780 197980 17369 1253 18109 90265;90266 91906 91906 1 KGTMTTGHNVADLVVILK FEVQIEEVRQVGSYKKGTMTTGHNVADLVV MTTGHNVADLVVILKILPTLEAVAALGNKV K K G L K I 1 0 1 1 0 0 0 2 1 1 2 2 1 0 0 0 3 0 0 3 0 0 18 1 1896.0503 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 72 89 ILF2 Interleukin enhancer-binding factor 2 yes no 3;4 1.2189E-06 67.605 By matching By MS/MS 1 2 1.0773 1.0997 4.2649 3 Median 1.1747 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.035 1.1279 5.6675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41606000 19905000 21701000 2537300 1230200 1307100 0 0 0 39069000 18675000 20394000 0 0 0 0 0 0 0 0 0 17370 609 18110 90267;90268;90269 91907;91908;91909;91910 91908 4 KGTPWEGGLFK GTMNLMNWECAIPGKKGTPWEGGLFKLRML IPGKKGTPWEGGLFKLRMLFKDDYPSSPPK K K G F K L 0 0 0 0 0 0 1 3 0 0 1 2 0 1 1 0 1 1 0 0 0 0 11 1 1218.6397 H3BPC4;H3BQQ9;B0QYN7;P63279 H3BPC4 45 55 UBE2I SUMO-conjugating enzyme UBC9 yes no 2;3 0.0038656 51.927 By MS/MS By matching 3 2 0.89801 0.90024 61.316 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89801 0.90024 81.477 3 0 Median 0.90159 0.81083 21.644 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33341000 19506000 13835000 0 0 0 0 0 0 29824000 17779000 12045000 3516900 1727100 1789800 0 0 0 0 0 0 17371 558 18111 90270;90271;90272;90273;90274 91911;91912 91911 2 KGTVEGFEPADNK ITLKKYDGRTKPIPKKGTVEGFEPADNKCL PKKGTVEGFEPADNKCLLRATDGKKKISTV K K G N K C 1 0 1 1 0 0 2 2 0 0 0 2 0 1 1 0 1 0 0 1 0 0 13 1 1390.6729 P37108;H0YLA2 P37108 43 55 SRP14 Signal recognition particle 14 kDa protein yes no 2;3 0.00026419 66.758 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 0.91718 0.85426 12.219 9 Median 0.90666 0.90591 1.6026 2 0 Median 0.92497 0.84395 18.478 4 0 Median 0.88048 0.89712 10.825 2 0 Median 0.94825 0.85426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40517000 20895000 19622000 18384000 9925800 8458200 7527600 3686100 3841500 8447700 4337700 4110000 6158100 2945500 3212600 0 0 0 0 0 0 17372 2266 18112 90275;90276;90277;90278;90279;90280;90281;90282;90283 91913;91914;91915;91916;91917;91918;91919 91919 7 KGTVYLTPYR FNDMKNVPEAFKGTKKGTVYLTPYRVIFLS FKGTKKGTVYLTPYRVIFLSKGKDAMQSFM K K G Y R V 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 2 1 0 0 10 1 1196.6554 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9 K7EIJ0 25 34 WBP2 WW domain-binding protein 2 yes no 2 0.00020362 117.89 By MS/MS By MS/MS By matching 3 2 1 1.8183 1.8623 46.274 6 Median 1.7213 1.6574 43.284 3 1 Median 2.0752 1.8971 81.814 2 1 Median 1.9209 2.0926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34514000 9443700 25070000 21389000 6015100 15374000 9619800 2384600 7235300 3504900 1044000 2460900 0 0 0 0 0 0 0 0 0 17373 512 18113 90284;90285;90286;90287;90288;90289 91920;91921;91922 91920 3 KGVAINFVK ELYIHRIGRSGRYGRKGVAINFVKNDDIRI SGRYGRKGVAINFVKNDDIRILRDIEQYYS R K G V K N 1 0 1 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 2 0 0 9 1 974.5913 P38919;I3L3H2 P38919 374 382 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 8.4457E-32 209.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 4 6 1.2979 1.2226 14.706 17 Median 1.505 1.4396 NaN 1 0 Median 1.3155 1.2113 4.7258 2 0 Median 1.2034 1.2807 3.7321 2 0 Median 1.1079 1.0189 35.432 2 0 Median 1.1479 1.2316 13.55 4 0 Median 1.3578 1.2075 8.6078 6 0 Median 239410000 104340000 135070000 9183800 3876500 5307400 10496000 4658400 5837900 40159000 17936000 22223000 97227000 41408000 55819000 55760000 24907000 30853000 26588000 11558000 15030000 17374 2278 18114 90290;90291;90292;90293;90294;90295;90296;90297;90298;90299;90300;90301;90302;90303;90304;90305;90306 91923;91924;91925;91926;91927;91928;91929;91930;91931;91932;91933;91934;91935;91936;91937;91938;91939;91940 91926 17 KGVAINFVTEEDKR ENYIHRIGRGGRFGRKGVAINFVTEEDKRI RKGVAINFVTEEDKRILRDIETFYNTTVEE R K G K R I 1 1 1 1 0 0 2 1 0 1 0 2 0 1 0 0 1 0 0 2 0 0 14 2 1604.8522 Q14240 Q14240 370 383 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes yes 3 1.1982E-05 85.457 By MS/MS By MS/MS By MS/MS 1 1 1 0.77772 0.84907 26.828 3 Median NaN NaN NaN 0 0 Median 1.0313 1.2327 NaN 1 0 Median 0.63128 0.73242 NaN 1 0 Median 0.77772 0.84907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67684000 38670000 29014000 0 0 0 12783000 6382500 6400900 21389000 13325000 8063800 33512000 18963000 14549000 0 0 0 0 0 0 17375 2867 18115 90307;90308;90309 91941;91942;91943;91944 91942 2 KGVAINMVTEEDKR ENYIHRIGRGGRFGRKGVAINMVTEEDKRT RKGVAINMVTEEDKRTLRDIETFYNTSIEE R K G K R T 1 1 1 1 0 0 2 1 0 1 0 2 1 0 0 0 1 0 0 2 0 0 14 2 1588.8243 P60842 P60842 369 382 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2;3 1.0285E-09 169.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 10 7 5 2 4 1.0684 1.1866 25.576 39 Median 1.1062 1.2094 11.793 11 1 Median 1.0378 1.114 20.025 10 0 Median 1.1666 1.3383 10.353 7 0 Median 0.95584 1.0435 6.6605 5 0 Median 2.4582 2.8385 5.0694 2 0 Median 1.0572 0.97081 11.914 4 0 Median 968770000 440920000 527850000 341490000 152710000 188780000 255130000 120900000 134230000 159970000 70001000 89974000 163700000 79418000 84277000 22573000 6008200 16565000 25901000 11885000 14016000 17376 2529 18116;18117 90310;90311;90312;90313;90314;90315;90316;90317;90318;90319;90320;90321;90322;90323;90324;90325;90326;90327;90328;90329;90330;90331;90332;90333;90334;90335;90336;90337;90338;90339;90340;90341;90342;90343;90344;90345;90346;90347;90348 91945;91946;91947;91948;91949;91950;91951;91952;91953;91954;91955;91956;91957;91958;91959;91960;91961;91962;91963;91964;91965;91966;91967;91968;91969;91970;91971;91972;91973;91974;91975;91976;91977;91978;91979;91980;91981;91982;91983;91984;91985;91986;91987;91988;91989;91990;91991;91992;91993;91994;91995;91996;91997;91998;91999;92000 91981 1209 56 KGVEGLIDIENPNR SDESEDEEDDYQQKRKGVEGLIDIENPNRV RKGVEGLIDIENPNRVAQTTKKVTQLDLDG R K G N R V 0 1 2 1 0 0 2 2 0 2 1 1 0 0 1 0 0 0 0 1 0 0 14 1 1552.8209 Q13442 Q13442 75 88 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2 2.7837E-34 167.71 By MS/MS 1 0.60682 0.63477 NaN 1 Median 0.60682 0.63477 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8317900 5136500 3181400 8317900 5136500 3181400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17377 2818 18118 90349 92001 92001 1 KGVNLPGAAVDLPAVSEK FLVTEVENGGSLGSKKGVNLPGAAVDLPAV NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K K G E K D 3 0 1 1 0 0 1 2 0 0 2 2 0 0 2 1 0 0 0 3 0 0 18 1 1763.9781 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 207 224 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3 2.6023E-32 147.39 By MS/MS By MS/MS By MS/MS By matching 7 4 2 1 0.80968 0.78949 11.713 14 Median 0.80353 0.79234 15.213 7 4 Median 0.81824 0.77565 5.3615 4 0 Median 0.82207 0.86061 10.858 2 0 Median 0.79512 0.73418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138800000 71943000 66860000 108900000 56857000 52039000 17369000 8778200 8591000 12275000 6186100 6088900 263430 122310 141120 0 0 0 0 0 0 17378 2005;1237 18119 90350;90351;90352;90353;90354;90355;90356;90357;90358;90359;90360;90361;90362;90363 92002;92003;92004;92005;92006;92007;92008;92009;92010;92011;92012;92013;92014;92015;92016;92017 92003 16 KGVNLPGAAVDLPAVSEKDIQDLK FLVTEVENGGSLGSKKGVNLPGAAVDLPAV VDLPAVSEKDIQDLKFGVEQDVDMVFASFI K K G L K F 3 0 1 3 0 1 1 2 0 1 3 3 0 0 2 1 0 0 0 3 0 0 24 2 2476.3537 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 207 230 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3;4 9.8354E-17 72.227 By MS/MS By MS/MS 4 6 0.84855 0.83993 16.003 10 Median 0.86398 0.94856 16.404 4 0 Median 0.82061 0.79254 13.592 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84047000 42803000 41244000 69422000 35165000 34257000 14625000 7637900 6986900 0 0 0 0 0 0 0 0 0 0 0 0 17379 2005;1237 18120 90364;90365;90366;90367;90368;90369;90370;90371;90372;90373 92018;92019;92020;92021;92022;92023 92021 6 KGVTSILPVLR NESKGEHVPGFCLPKKGVTSILPVLREGVL CLPKKGVTSILPVLREGVLTGSPEQKEEAA K K G L R E 0 1 0 0 0 0 0 1 0 1 2 1 0 0 1 1 1 0 0 2 0 0 11 1 1181.7496 Q92616 Q92616 2259 2269 GCN1L1 Translational activator GCN1 yes yes 2 0.0016635 60.518 By MS/MS By matching By matching By matching By matching 1 2 1 1 3 1.0525 1.0194 11.581 8 Median 0.96804 0.97334 NaN 1 0 Median 0.98908 0.94332 0.47158 2 0 Median 0.80053 0.95085 NaN 1 0 Median 1.1058 1.0676 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3521 1.2043 0.36847 3 0 Median 15434000 7776200 7657300 9823000 4983200 4839800 3949100 1947400 2001700 1140300 623660 516660 82403 37032 45370 0 0 0 438650 184940 253710 17380 3544 18121 90374;90375;90376;90377;90378;90379;90380;90381 92024;92025 92024 2 KGWHEHVTQDLR STIPTAAPPSSTGVRKGWHEHVTQDLRSHL GVRKGWHEHVTQDLRSHLVHKLVQAIFPTP R K G L R S 0 1 0 1 0 1 1 1 2 0 1 1 0 0 0 0 1 1 0 1 0 0 12 1 1504.7535 Q92793;I3L466;I3L0Q1 Q92793 590 601 CREBBP CREB-binding protein yes no 3 0.0010759 43.382 By MS/MS By MS/MS 1 1 0.95251 1.0249 26.832 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0331 1.239 NaN 1 0 Median 0.87817 0.84777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6307600 2985700 3321900 0 0 0 0 0 0 5060500 2385100 2675400 1247100 600540 646550 0 0 0 0 0 0 17381 3557 18122 90382;90383 92026;92027;92028 92028 3 KGWSMSEQSEESVGGR STSVKSPKTVSPPIRKGWSMSEQSEESVGG GWSMSEQSEESVGGRVAERKQVENAKASKK R K G G R V 0 1 0 0 0 1 3 3 0 0 0 1 1 0 0 4 0 1 0 1 0 0 16 1 1752.7737 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 614 629 LIMA1 LIM domain and actin-binding protein 1 yes no 3 0.0092105 23.527 By MS/MS 1 1.132 1.0761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.132 1.0761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1548700 479140 1069600 0 0 0 0 0 0 0 0 0 1548700 479140 1069600 0 0 0 0 0 0 17382 4273 18123 90384 92029 92029 1 KGYEEVHVPALKPK NKRCQLPDGSFRRQRKGYEEVHVPALKPKP RKGYEEVHVPALKPKPFGSEEQLLPVEKLP R K G P K P 1 0 0 0 0 0 2 1 1 0 1 3 0 0 2 0 0 0 1 2 0 0 14 2 1593.8879 O75643;A0A494C1A5 O75643 440 453 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 4 0.04378 25.328 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1350600 0 1350600 0 0 0 0 0 0 0 0 0 1350600 0 1350600 0 0 0 0 0 0 17383 1688 18124 90385 92030 92030 1 KHAGPIVSVWHR QQSVQTLSLWLIHHRKHAGPIVSVWHRELR HHRKHAGPIVSVWHRELRKAKSNRKLTFLY R K H H R E 1 1 0 0 0 0 0 1 2 1 0 1 0 0 1 1 0 1 0 2 0 0 12 1 1385.768 Q9NQG5;E9PIQ9;E9PQF3 Q9NQG5 35 46 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 3 0.00024099 58.172 By matching By MS/MS 1 1 1.0805 1.0776 34.362 2 Median NaN NaN NaN 0 0 Median 1.5042 1.374 NaN 1 0 Median 0.77607 0.84516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5066700 2616000 2450700 0 0 0 1140700 467000 673680 3926100 2149000 1777000 0 0 0 0 0 0 0 0 0 17384 4062 18125 90386;90387 92031;92032 92032 2 KHALLEADVAAHQDR DDYGKDLTNVQNLQKKHALLEADVAAHQDR KHALLEADVAAHQDRIDGITIQARQFQDAG K K H D R I 4 1 0 2 0 1 1 0 2 0 2 1 0 0 0 0 0 0 0 1 0 0 15 1 1672.8645 A0A0D9SF54;Q13813 Q13813 719 733 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3;4 1.0604E-06 87.566 By MS/MS By MS/MS By MS/MS By matching 3 3 6 1 1.1061 1.1411 23.597 13 Median NaN NaN NaN 0 0 Median 1.4533 1.3435 21.924 3 0 Median 0.77487 0.92167 23.513 3 2 Median 1.1582 1.1038 13.522 6 0 Median NaN NaN NaN 0 0 Median 0.94919 0.83791 NaN 1 0 Median 45616000 20020000 25596000 0 0 0 22978000 9095100 13883000 9540800 4815000 4725800 12762000 5943300 6818700 0 0 0 334840 166370 168470 17385 264;2838 18126 90388;90389;90390;90391;90392;90393;90394;90395;90396;90397;90398;90399;90400 92033;92034;92035;92036;92037;92038;92039;92040;92041;92042;92043;92044;92045;92046;92047 92044 15 KHALLEADVAAHQDRIDGITIQAR DDYGKDLTNVQNLQKKHALLEADVAAHQDR AAHQDRIDGITIQARQFQDAGHFDAENIKK K K H A R Q 5 2 0 3 0 2 1 1 2 3 2 1 0 0 0 0 1 0 0 1 0 0 24 2 2640.4096 A0A0D9SF54;Q13813 Q13813 719 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 4 4.1145E-18 76.807 By MS/MS 1 0.83553 1.0041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83553 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14555000 6947600 7607300 0 0 0 0 0 0 14555000 6947600 7607300 0 0 0 0 0 0 0 0 0 17386 264;2838 18127 90401 92048;92049 92049 2 KHDLNPLIK ANKEVPCYVFDEELRKHDLNPLIKLSGAYL FDEELRKHDLNPLIKLSGAYLVDDSDPDTS R K H I K L 0 0 1 1 0 0 0 0 1 1 2 2 0 0 1 0 0 0 0 0 0 0 9 1 1076.6342 P11717 P11717 183 191 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.018034 46.129 By MS/MS 1 1.1266 1.0712 NaN 1 Median NaN NaN NaN 0 0 Median 1.1266 1.0712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2373000 1087100 1285900 0 0 0 2373000 1087100 1285900 0 0 0 0 0 0 0 0 0 0 0 0 17387 1969 18128 90402 92050 92050 1 KHEAFESDLAAHQDR DYETATLSDIKALIRKHEAFESDLAAHQDR KHEAFESDLAAHQDRVEQIAAIAQELNELD R K H D R V 3 1 0 2 0 1 2 0 2 0 1 1 0 1 0 1 0 0 0 0 0 0 15 1 1752.818 O43707;P12814;H9KV75;H7C5W8;P35609;A0A494C1A0;F6THM6;A0A494C060 O43707 455 469 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2;3;4 6.0185E-19 182.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 7 1 3 0.96625 0.91051 26.073 14 Median 1.0933 1.1105 30.974 3 0 Median 0.95418 0.89353 30.084 7 0 Median 0.80296 0.91262 NaN 1 0 Median 0.99726 0.95838 19.737 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130880000 65572000 65305000 8185200 4045300 4139900 115430000 57918000 57515000 2665200 1230900 1434300 4592800 2377400 2215400 0 0 0 0 0 0 17388 1585;1983 18129 90403;90404;90405;90406;90407;90408;90409;90410;90411;90412;90413;90414;90415;90416 92051;92052;92053;92054;92055;92056;92057;92058;92059;92060;92061;92062;92063;92064;92065;92066;92067 92057 16 KHEAFETDFTVHK EDYGDTLAAIQGLLKKHEAFETDFTVHKDR LKKHEAFETDFTVHKDRVNDVCTNGQDLIK K K H H K D 1 0 0 1 0 0 2 0 2 0 0 2 0 2 0 0 2 0 0 1 0 0 13 1 1587.7682 A0A0D9SF54;Q13813 Q13813 1911 1923 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 1.3638E-07 106.32 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 5 1.374 1.3158 16.987 8 Median 1.5872 1.5916 NaN 1 1 Median 1.3787 1.3205 13.935 3 3 Median 0.99843 1.1583 NaN 1 0 Median 1.1217 1.0862 16.698 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132160000 44700000 87459000 5320200 1057100 4263200 71085000 28021000 43064000 35902000 10944000 24958000 19852000 4678800 15173000 0 0 0 0 0 0 17389 264;2838 18130 90417;90418;90419;90420;90421;90422;90423;90424;90425;90426;90427;90428;90429 92068;92069;92070;92071;92072;92073;92074;92075;92076;92077;92078;92079;92080;92081;92082 92081 15 KHEAFETDFTVHKDR EDYGDTLAAIQGLLKKHEAFETDFTVHKDR KHEAFETDFTVHKDRVNDVCTNGQDLIKKN K K H D R V 1 1 0 2 0 0 2 0 2 0 0 2 0 2 0 0 2 0 0 1 0 0 15 2 1858.8962 A0A0D9SF54;Q13813 Q13813 1911 1925 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 3.9767E-05 78.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1 0.91311 1.0366 22.972 9 Median 1.2582 1.33 NaN 1 0 Median 0.91311 0.97281 NaN 1 0 Median 0.8937 1.1807 34.176 3 0 Plateau 0.97389 1.0366 13.003 3 0 Median NaN NaN NaN 0 0 Median 1.074 1.1018 NaN 1 0 Median 66216000 33957000 32260000 6505200 3243000 3262200 17173000 8550900 8621700 37498000 19738000 17759000 3528200 1737900 1790400 0 0 0 1512400 686540 825820 17390 264;2838 18131 90430;90431;90432;90433;90434;90435;90436;90437;90438 92083;92084;92085;92086;92087;92088;92089;92090;92091;92092;92093;92094;92095;92096 92092 14 KHEAIETDIAAYEER DNFGFDLPAVEAATKKHEAIETDIAAYEER KHEAIETDIAAYEERVQAVVAVARELEAEN K K H E R V 3 1 0 1 0 0 4 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 15 1 1773.8533 Q01082;A0A087WUZ3;F8W6C1 Q01082 463 477 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3;4 2.6099E-25 164.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 4 2 1 1 1.1123 1.2403 15.282 17 Median 1.1692 1.1901 9.8457 4 0 Median 1.0975 1.0519 16.983 5 0 Median 1.0619 1.2723 6.0435 4 2 Median 1.4789 1.4277 9.5608 2 0 Median 1.1123 1.2599 NaN 1 0 Median 1.6742 1.4577 NaN 1 0 Median 293090000 132220000 160870000 43789000 18952000 24837000 67465000 30476000 36989000 162540000 73985000 88554000 16225000 7428000 8797500 1197100 613400 583670 1873400 763710 1109700 17391 2681 18132 90439;90440;90441;90442;90443;90444;90445;90446;90447;90448;90449;90450;90451;90452;90453;90454;90455 92097;92098;92099;92100;92101;92102;92103;92104;92105;92106;92107;92108;92109;92110;92111;92112;92113;92114;92115;92116;92117 92107 21 KHEAIETDIVAYSGR DNFGLELAAVEAAVRKHEAIETDIVAYSGR KHEAIETDIVAYSGRVQAVDAVAAELAAER R K H G R V 2 1 0 1 0 0 2 1 1 2 0 1 0 0 0 1 1 0 1 1 0 0 15 1 1687.8529 O15020;A4QPE4 O15020 466 480 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 3 3.5706E-10 104.95 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0528 1.1037 23.544 4 Median NaN NaN NaN 0 0 Median 1.0101 0.93955 NaN 1 0 Median 0.81684 0.97891 NaN 1 0 Median 1.6171 1.5611 NaN 1 1 Median 1.0973 1.2443 NaN 1 0 Median NaN NaN NaN 0 0 Median 29125000 14681000 14444000 0 0 0 6463300 3233700 3229600 17056000 9252600 7803300 3048200 1119600 1928600 2557600 1075100 1482500 0 0 0 17392 1512 18133 90456;90457;90458;90459 92118;92119 92118 2 KHEALMSDLSAYGSSIQALR TDYGKDEDSAEALLKKHEALMSDLSAYGSS MSDLSAYGSSIQALREQAQSCRQQVAPTDD K K H L R E 3 1 0 1 0 1 1 1 1 1 3 1 1 0 0 4 0 0 1 0 0 0 20 1 2176.0947 A0A0D9SF54;Q13813 Q13813 931 950 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3;4 9.499E-20 120.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 2 1.0651 1.1273 13.881 12 Median 1.252 1.2576 28.708 3 0 Median 1.3009 1.2092 3.4545 2 0 Median 0.93823 1.1249 7.5804 5 1 Median 1.0995 1.0614 4.2345 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127860000 61502000 66356000 22556000 9626000 12930000 14603000 6520100 8083000 89647000 44836000 44811000 1052300 519240 533060 0 0 0 0 0 0 17393 264;2838 18134;18135 90460;90461;90462;90463;90464;90465;90466;90467;90468;90469;90470;90471 92120;92121;92122;92123;92124;92125;92126;92127;92128;92129;92130;92131;92132;92133;92134;92135 92126 125 16 KHEDFDKAINVQEEK EDKGDSLDSVEALIKKHEDFDKAINVQEEK KHEDFDKAINVQEEKIAALQAFADQLIAAG K K H E K I 1 0 1 2 0 1 3 0 1 1 0 3 0 1 0 0 0 0 0 1 0 0 15 2 1828.8955 A0A0D9SF54;Q13813 Q13813 1486 1500 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 0.00010855 58.071 By MS/MS 2 0.85288 0.98812 11.877 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85288 0.98812 11.877 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11153000 5289600 5863100 0 0 0 0 0 0 11153000 5289600 5863100 0 0 0 0 0 0 0 0 0 17394 264;2838 18136 90472;90473 92136;92137;92138 92138 3 KHEIEAAIVR DPERKETRQKVDDDRKHEIEAAIVRIMKSR VDDDRKHEIEAAIVRIMKSRKKMQHNVLVA R K H V R I 2 1 0 0 0 0 2 0 1 2 0 1 0 0 0 0 0 0 0 1 0 0 10 1 1164.6615 Q13618;A0A087WTG3 Q13618 700 709 CUL3 Cullin-3 yes no 2 0.001857 66.692 By MS/MS By matching 1 1 1.0689 1.0489 15.877 2 Median NaN NaN NaN 0 0 Median 1.1721 1.1736 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97489 0.93754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2176100 923440 1252600 0 0 0 1617600 667200 950360 0 0 0 558490 256240 302250 0 0 0 0 0 0 17395 2831 18137 90474;90475 92139 92139 1 KHFTILDAPGHK GKTVEVGRAYFETEKKHFTILDAPGHKSFV TEKKHFTILDAPGHKSFVPNMIGGASQADL K K H H K S 1 0 0 1 0 0 0 1 2 1 1 2 0 1 1 0 1 0 0 0 0 0 12 1 1362.7408 P15170;H3BR35;H3BSV8;Q8IYD1 P15170 152 163 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes no 3 0.050942 25.448 By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 0.84098 0.8363 17.995 7 Median 0.86188 0.89352 NaN 1 0 Median 0.8734 0.82057 13.361 3 1 Plateau 0.84098 0.95328 NaN 1 1 Median 0.86229 0.82551 32.398 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15162000 7959600 7201900 1164300 661370 502910 9642500 5115200 4527200 2846800 1375700 1471100 1508000 807340 700650 0 0 0 0 0 0 17396 2016 18138 90476;90477;90478;90479;90480;90481;90482 92140;92141;92142 92142 3 KHGLEVIYMIEPIDEYCVQQLK TKDQVANSAFVERLRKHGLEVIYMIEPIDE YMIEPIDEYCVQQLKEFEGKTLVSVTKEGL R K H L K E 0 0 0 1 1 2 3 1 1 3 2 2 1 0 1 0 0 0 2 2 0 0 22 1 2704.3604 P07900 P07900 513 534 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.0532 7.1933 By MS/MS By matching 1 1 0.86383 0.83778 40.954 2 Median NaN NaN NaN 0 0 Median 0.64853 0.62714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1506 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1932100 1059100 872980 0 0 0 1729200 968710 760460 0 0 0 202920 90399 112520 0 0 0 0 0 0 17397 1894 18139 90483;90484 92143 92143 1 KHGVVPLATYMR GKRRGTRYMFSRPFRKHGVVPLATYMRIYK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT R K H M R I 1 1 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 1 2 0 0 12 1 1370.7493 P46778;G3V1B3;M0R181 P46778 21 32 RPL21 60S ribosomal protein L21 yes no 2;3 1.1296E-06 102.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1.0022 0.97057 6.9541 6 Median 0.97283 1.0119 5.5988 2 0 Median 1.0489 0.96857 NaN 1 0 Median 1.009 1.0482 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87391 0.92611 NaN 1 0 Median 0.99553 0.88052 NaN 1 0 Median 118950000 57586000 61363000 84668000 40795000 43873000 11173000 5110900 6062100 6238200 2740100 3498000 0 0 0 12446000 6702200 5744000 4424500 2238300 2186100 17398 2344 18140 90485;90486;90487;90488;90489;90490;90491;90492 92144;92145;92146;92147;92148;92149;92150;92151;92152;92153;92154;92155 92144 12 KHHLQPENPGPGGAAPSLEQNR DSESSLQKRRRKKKKKHHLQPENPGPGGAA NPGPGGAAPSLEQNRGREPEASGLKALKAR K K H N R G 2 1 2 0 0 2 2 3 2 0 2 1 0 0 4 1 0 0 0 0 0 0 22 1 2333.1625 Q14684 Q14684 406 427 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 4 0.00018647 28.202 By MS/MS 1 0.40455 0.45959 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40455 0.45959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3364600 2466400 898260 0 0 0 0 0 0 3364600 2466400 898260 0 0 0 0 0 0 0 0 0 17399 2890 18141 90493 92156;92157 92157 2 KHIISHLFSQPK SPQTIVELFFQEVARKHIISHLFSQPKAPL VARKHIISHLFSQPKAPLSQTGLNWPEMIT R K H P K A 0 0 0 0 0 1 0 0 2 2 1 2 0 1 1 2 0 0 0 0 0 0 12 1 1433.8143 Q12769;G3V198;E9PR16 Q12769 833 844 NUP160 Nuclear pore complex protein Nup160 yes no 2;3 0.00032236 54.023 By matching By MS/MS By MS/MS 2 2 2 1.2085 1.1425 19.165 6 Median NaN NaN NaN 0 0 Median 1.5074 1.4125 22.036 2 0 Median 0.87096 0.99968 7.8115 2 0 Median 1.2085 1.1512 9.0311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18809000 9058700 9750100 0 0 0 3325100 1312500 2012600 9951300 5130200 4821100 5532300 2615900 2916400 0 0 0 0 0 0 17400 2756 18142 90494;90495;90496;90497;90498;90499 92158;92159;92160;92161;92162;92163;92164;92165;92166;92167 92163 10 KHIMGQNVADYMR GYDSESKEFNAEVHRKHIMGQNVADYMRYL HRKHIMGQNVADYMRYLMEEDEDAYKKQFS R K H M R Y 1 1 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 1 0 0 13 1 1561.7494 A0A2R8Y6J3;P46777 A0A2R8Y6J3 147 159 RPL5 60S ribosomal protein L5 yes no 2;3 6.539E-06 147.91 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 3 1.0701 1.0673 58.432 14 Median 1.0534 1.0928 8.4155 6 0 Median 2.0943 1.9016 90.047 4 1 Linear 0.86615 0.94072 NaN 1 1 Median 1.2511 1.1807 82.852 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 225350000 120660000 104690000 116110000 55187000 60923000 75255000 43075000 32180000 8738300 4361500 4376800 25242000 18034000 7208500 0 0 0 0 0 0 17401 375 18143;18144 90500;90501;90502;90503;90504;90505;90506;90507;90508;90509;90510;90511;90512;90513 92168;92169;92170;92171;92172;92173;92174;92175;92176;92177;92178;92179;92180;92181;92182;92183;92184;92185;92186 92178 176;177 19 KHINTWVAEK EMEELDFISAVEKSRKHINTWVAEKTEGKI VEKSRKHINTWVAEKTEGKIAELLSPGSVD R K H E K T 1 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 1 1 0 1 0 0 10 1 1224.6615 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 136 145 SERPINB6 Serpin B6 yes no 3 0.030753 20.834 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.4289 1.3027 26.84 5 Linear 0.99541 0.93163 NaN 1 0 Median 1.3663 1.2347 17.134 2 0 Median 0.7797 0.84965 NaN 1 0 Median 0.77729 0.68252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4686000 2007300 2678700 893130 459100 434030 3353900 1319400 2034500 329720 164360 165360 109240 64453 44791 0 0 0 0 0 0 17402 1 18145 90514;90515;90516;90517;90518 92187;92188 92187 2 KHIQDLNWQR VHMIEHAQKELQKLRKHIQDLNWQRKNMQL LQKLRKHIQDLNWQRKNMQLTAGSKLREME R K H Q R K 0 1 1 1 0 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 10 1 1336.7 O75934 O75934 158 167 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 3 0.0027822 42.336 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1284 1.0698 5.9487 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1046 1.154 NaN 1 0 Median 1.1527 1.0204 NaN 1 0 Median 0.97489 1.0303 NaN 1 0 Median 1.2431 1.1109 NaN 1 0 Median 17321000 7989600 9331200 0 0 0 0 0 0 10867000 5003000 5863800 1872200 887670 984510 3636500 1699500 1937000 945400 399450 545950 17403 1707 18146 90519;90520;90521;90522 92189;92190;92191;92192;92193;92194 92191 6 KHLEINPDHPIVETLR QALRDNSTMGYMMAKKHLEINPDHPIVETL HLEINPDHPIVETLRQKAEADKNDKAVKDL K K H L R Q 0 1 1 1 0 0 2 0 2 2 2 1 0 0 2 0 1 0 0 1 0 0 16 1 1910.0374 P08238 P08238 624 639 HSP90AB1 Heat shock protein HSP 90-beta yes yes 3;4 5.6905E-06 83.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 2 3 1 0.95666 0.91491 29.476 18 Median 0.88278 0.91072 34.024 5 0 Median 0.96291 0.91491 8.788 4 0 Median 0.79023 0.89406 13.944 3 0 Median 0.95632 0.8963 17.137 2 0 Median 1.4353 1.5789 12.566 3 0 Median 0.76743 0.66848 NaN 1 1 Median 378780000 191650000 187130000 218860000 112160000 106700000 77533000 39382000 38151000 45206000 23943000 21263000 10749000 5131400 5617400 24663000 9957900 14705000 1768700 1081500 687240 17404 1899 18147 90523;90524;90525;90526;90527;90528;90529;90530;90531;90532;90533;90534;90535;90536;90537;90538;90539;90540 92195;92196;92197;92198;92199;92200;92201;92202;92203;92204;92205;92206;92207;92208;92209;92210;92211;92212;92213;92214;92215;92216;92217;92218;92219;92220;92221 92213 26 KHLEINPDHSIIETLR QALRDNSTMGYMAAKKHLEINPDHSIIETL HLEINPDHSIIETLRQKAEADKNDKSVKDL K K H L R Q 0 1 1 1 0 0 2 0 2 3 2 1 0 0 1 1 1 0 0 0 0 0 16 1 1914.0323 P07900 P07900 632 647 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2;3;4 3.1179E-11 167.98 By MS/MS By MS/MS By MS/MS 4 3 1 0.97611 0.97496 17.645 8 Median 0.97313 1.0031 24.949 4 0 Median 0.98696 0.96946 2.7755 3 0 Median 0.86417 0.98049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 345980000 168000000 177980000 210880000 103660000 107220000 128370000 60211000 68156000 6730200 4123300 2606900 0 0 0 0 0 0 0 0 0 17405 1894 18148 90541;90542;90543;90544;90545;90546;90547;90548 92222;92223;92224;92225;92226;92227;92228;92229;92230;92231;92232;92233;92234;92235;92236;92237;92238 92225 17 KHLGTLNFGGIR LLFKPLVLRRQYLRRKHLGTLNFGGIRVGN LRRKHLGTLNFGGIRVGNGPTEEDAEIIQH R K H I R V 0 1 1 0 0 0 0 3 1 1 2 1 0 1 0 0 1 0 0 0 0 0 12 1 1311.7412 Q93050;B7Z641;B7Z2A9;F5H1T6;K7ERA0;K7ERA6 Q93050 666 677 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 3 3.698E-06 106.49 By MS/MS 1 1.1525 1.0639 NaN 1 Median NaN NaN NaN 0 0 Median 1.1525 1.0639 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18264000 7814400 10449000 0 0 0 18264000 7814400 10449000 0 0 0 0 0 0 0 0 0 0 0 0 17406 3576 18149 90549 92239 92239 1 KHLLIGVSSDR ALYEKADIKGPEDKKKHLLIGVSSDRGLCG EDKKKHLLIGVSSDRGLCGAIHSSIAKQMK K K H D R G 0 1 0 1 0 0 0 1 1 1 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1223.6986 P36542 P36542 90 100 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 3 0.053858 12.922 By MS/MS 1 1.9223 1.75 NaN 1 Median NaN NaN NaN 0 0 Median 1.9223 1.75 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1503600 441060 1062500 0 0 0 1503600 441060 1062500 0 0 0 0 0 0 0 0 0 0 0 0 17407 2257 18150 90550 92240 92240 1 KHPAPPPSNYEILVK AKKIHEEFSEHALLRKHPAPPPSNYEILVK KHPAPPPSNYEILVKAARSRNLEIKTDTAK R K H V K A 1 0 1 0 0 0 1 0 1 1 1 2 0 0 4 1 0 0 1 1 0 0 15 1 1688.925 Q9Y2L1;G3V1J5 Q9Y2L1 690 704 DIS3 Exosome complex exonuclease RRP44 yes no 3 0.065979 16.744 By MS/MS 1 0.38172 0.43645 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38172 0.43645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4290600 3098400 1192200 0 0 0 0 0 0 4290600 3098400 1192200 0 0 0 0 0 0 0 0 0 17408 4384 18151 90551 92241 92241 1 KHPDASVNFSEFSK SYAFFVQTCREEHKKKHPDASVNFSEFSKK KKHPDASVNFSEFSKKCSERWKTMSAKEKG K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P09429;Q5T7C4 P09429 30 43 HMGB1 High mobility group protein B1 yes no 2;3;4 1.8224E-08 103.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 5 6 1 3 0.93097 0.89341 7.4888 20 Median 0.90576 0.86138 4.4866 4 0 Linear 0.93768 0.85712 7.3321 3 0 Median 0.8791 0.91594 7.687 5 0 Median 1.0079 0.89343 2.8335 4 0 Median 0.94672 1.0115 NaN 1 0 Median 0.93223 0.78632 8.8953 3 0 Median 912880000 458890000 453980000 156160000 79139000 77024000 36932000 18091000 18841000 317650000 163090000 154570000 366550000 180740000 185810000 8464300 4276200 4188100 27114000 13559000 13556000 17409 1915 18152 90552;90553;90554;90555;90556;90557;90558;90559;90560;90561;90562;90563;90564;90565;90566;90567;90568;90569;90570;90571;90572;90573 92242;92243;92244;92245;92246;92247;92248;92249;92250;92251;92252;92253;92254;92255;92256;92257;92258;92259;92260;92261;92262;92263;92264;92265;92266;92267;92268;92269;92270;92271 92261 30 KHPDASVNFSEFSKK SYAFFVQTCREEHKKKHPDASVNFSEFSKK KHPDASVNFSEFSKKCSERWKTMSAKEKGK K K H K K C 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P09429;Q5T7C4 P09429 30 44 HMGB1 High mobility group protein B1 yes no 3;4 4.5268E-10 120.32 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 1 4 3 2 1 0.98439 1.0047 17.532 14 Median 0.92185 0.96297 13.646 3 0 Median 1.054 1.0315 NaN 1 0 Median 0.9293 1.0486 11.048 4 0 Median 1.0601 0.98115 4.7918 3 0 Median 0.9371 1.0253 2.7027 2 0 Median 1.9026 1.7815 NaN 1 0 Median 293380000 145290000 148090000 40401000 20043000 20358000 10817000 4951600 5864900 68355000 36286000 32069000 166620000 80193000 86424000 6541200 3567200 2974000 652300 247370 404930 17410 1915 18153 90574;90575;90576;90577;90578;90579;90580;90581;90582;90583;90584;90585;90586;90587 92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286;92287;92288;92289 92284 18 KHPDSSVNFAEFSK SYAFFVQTCREEHKKKHPDSSVNFAEFSKK KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P26583;D6R9A6 P26583 30 43 HMGB2 High mobility group protein B2 yes no 2;3;4 2.091E-07 129.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 1 2 0.85358 0.8546 13.712 11 Median 0.81384 0.82671 4.6919 2 1 Median 1.0221 0.93108 NaN 1 0 Median 0.88743 0.87725 15.133 3 1 Plateau 1.056 0.93971 5.4913 2 0 Median 0.79421 0.84754 NaN 1 0 Median 0.91968 0.79818 28.989 2 0 Median 482360000 249070000 233290000 55830000 31224000 24607000 27274000 13400000 13874000 286420000 149940000 136480000 94159000 44603000 49556000 6907000 4321700 2585300 11768000 5575400 6192900 17411 2146 18154 90588;90589;90590;90591;90592;90593;90594;90595;90596;90597;90598;90599 92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303;92304;92305;92306;92307;92308;92309 92304 20 KHPDSSVNFAEFSKK SYAFFVQTCREEHKKKHPDSSVNFAEFSKK KHPDSSVNFAEFSKKCSERWKTMSAKEKSK K K H K K C 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P26583;D6R9A6 P26583 30 44 HMGB2 High mobility group protein B2 yes no 2;3;4 2.0986E-08 149.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 4 2 0.80674 0.84317 36.533 13 Median 0.80674 0.84271 10.747 3 0 Median 1.0952 1.0718 NaN 1 0 Median 0.80805 0.91174 9.6682 3 0 Plateau 1.1039 1.015 68.798 4 0 Median 0.72781 0.79632 6.0499 2 0 Median NaN NaN NaN 0 0 Median 193910000 95162000 98747000 21544000 10966000 10578000 2992900 1548900 1443900 62591000 31614000 30977000 100080000 46965000 53111000 6704500 4067400 2637100 0 0 0 17412 2146 18155 90600;90601;90602;90603;90604;90605;90606;90607;90608;90609;90610;90611;90612 92310;92311;92312;92313;92314;92315;92316;92317;92318;92319;92320;92321;92322;92323;92324;92325;92326;92327;92328;92329;92330 92329 20 KHPEVDVLINFASLR EILIPVFKNMADAMRKHPEVDVLINFASLR KHPEVDVLINFASLRSAYDSTMETMNYAQI R K H L R S 1 1 1 1 0 0 1 0 1 1 2 1 0 1 1 1 0 0 0 2 0 0 15 1 1736.9574 P53396 P53396 562 576 ACLY ATP-citrate synthase yes yes 3 0.00032779 40.237 By MS/MS By MS/MS 1 1 0.99189 0.97739 13.823 2 Median 0.85141 0.88638 NaN 1 0 Median 1.1556 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14351000 7949400 6401200 6559200 4362400 2196800 7791400 3587000 4204400 0 0 0 0 0 0 0 0 0 0 0 0 17413 2467 18156 90613;90614 92331;92332 92331 2 KHPSSPECLVSAQK SERLDFVCSFLQKNRKHPSSPECLVSAQKV RKHPSSPECLVSAQKVLEGSELELAKMTML R K H Q K V 1 0 0 0 1 1 1 0 1 0 1 2 0 0 2 3 0 0 0 1 0 0 14 1 1566.7824 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;F5H1L0;F8W6T3;Q14980 Q14980 73 86 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.028764 17.701 By MS/MS By matching 1 1 0.95508 0.89039 12.036 2 Median NaN NaN NaN 0 0 Median 0.99542 0.96949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91637 0.81774 NaN 1 0 Median 2067400 986800 1080600 0 0 0 1191600 574540 617030 0 0 0 0 0 0 0 0 0 875850 412270 463580 17414 2905;77 18157 90615;90616 92333;92334 92334 2 KHQALQAEIAGHEPR TNRGKDLIGVQNLLKKHQALQAEIAGHEPR KHQALQAEIAGHEPRIKAVTQKGNAMVEEG K K H P R I 3 1 0 0 0 2 2 1 2 1 1 1 0 0 1 0 0 0 0 0 0 0 15 1 1683.8805 A0A0D9SF54;Q13813 Q13813 825 839 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 9.2398E-10 118.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 4 9 1 2 0.93712 0.88959 29.669 19 Median 1.094 1.1036 NaN 1 0 Median 1.0954 1.0275 4.4793 4 0 Median 0.7629 0.91394 35.307 3 0 Median 0.93009 0.88197 25.973 8 1 Median 0.78382 0.88657 NaN 1 1 Median 0.63445 0.55925 54.07 2 0 Median 146940000 74414000 72521000 5625500 2704600 2921000 69627000 32270000 37357000 36061000 20835000 15226000 28072000 14147000 13925000 4728500 2609700 2118800 2821300 1847600 973610 17415 264;2838 18158 90617;90618;90619;90620;90621;90622;90623;90624;90625;90626;90627;90628;90629;90630;90631;90632;90633;90634;90635;90636;90637 92335;92336;92337;92338;92339;92340;92341;92342;92343;92344;92345;92346;92347;92348;92349;92350;92351;92352;92353;92354;92355;92356;92357;92358;92359;92360;92361;92362;92363;92364;92365;92366;92367;92368;92369;92370;92371;92372;92373;92374;92375;92376;92377;92378;92379;92380;92381;92382 92377 48 KHQLLEADISAHEDR EDYGKDLASVNNLLKKHQLLEADISAHEDR KHQLLEADISAHEDRLKDLNSQADSLMTSS K K H D R L 2 1 0 2 0 1 2 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1760.8806 A0A0D9SF54;Q13813 Q13813 1699 1713 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 7.92E-10 98.694 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 4 4 1 1 1.0707 1.0602 25.233 14 Median 1.3598 1.3765 18.06 2 0 Median 1.2051 1.1036 27.831 3 0 Median 0.87699 1.0508 21.297 3 0 Plateau 1.1089 1.0515 19.91 4 0 Median 1.0704 1.2158 NaN 1 0 Median 0.91518 0.79857 NaN 1 0 Median 129930000 60097000 69831000 5918900 2766600 3152300 66609000 28489000 38120000 31467000 17347000 14120000 22591000 9815200 12776000 1915200 864910 1050300 1426800 814350 612450 17416 264;2838 18159 90638;90639;90640;90641;90642;90643;90644;90645;90646;90647;90648;90649;90650;90651;90652 92383;92384;92385;92386;92387;92388;92389;92390;92391;92392;92393;92394;92395;92396 92390 12 KHQLLEADISAHEDRLK EDYGKDLASVNNLLKKHQLLEADISAHEDR QLLEADISAHEDRLKDLNSQADSLMTSSAF K K H L K D 2 1 0 2 0 1 2 0 2 1 3 2 0 0 0 1 0 0 0 0 0 0 17 2 2002.0596 A0A0D9SF54;Q13813 Q13813 1699 1715 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 4;5 7.5592E-07 85.473 By MS/MS By matching By MS/MS 1 1 3 0.94078 1.1423 11.96 5 Median 0.97237 1.0279 NaN 1 1 Median 1.1755 1.2523 NaN 1 0 Median 0.8646 1.1423 13.587 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36082000 16715000 19368000 3583300 1387500 2195800 6004200 2445700 3558600 26495000 12881000 13613000 0 0 0 0 0 0 0 0 0 17417 264;2838 18160 90653;90654;90655;90656;90657 92397;92398;92399;92400 92399 3 KHQVSVEGTNQTDVK VEKEVPPGSAIIHIKKHQVSVEGTNQTDVK KHQVSVEGTNQTDVKAVGGPAKLLVVSLEE K K H V K A 0 0 1 1 0 2 1 1 1 0 0 2 0 0 0 1 2 0 0 3 0 0 15 1 1668.8431 Q14676 Q14676 540 554 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.074388 5.7802 By matching By MS/MS By matching By matching 1 1 1 1 1.1101 1.1166 14.305 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0541 1.21 NaN 1 0 Median 1.1691 1.0881 NaN 1 0 Median 0.83655 0.87321 NaN 1 0 Median 1.2574 1.1458 NaN 1 0 Median 3799200 1787100 2012200 0 0 0 0 0 0 2304700 1129100 1175500 425590 218240 207350 831980 343810 488170 237030 95912 141110 17418 2887 18161 90658;90659;90660;90661 92401 92401 1 KHSQFIGYPITLFVEK QTEYLEERRIKEIVKKHSQFIGYPITLFVE HSQFIGYPITLFVEKERDKEVSDDEAEEKE K K H E K E 0 0 0 0 0 1 1 1 1 2 1 2 0 2 1 1 1 0 1 1 0 0 16 1 1906.0353 P07900;G3V2J8;Q58FG0 P07900 209 224 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2;3 0.013112 42.095 By MS/MS 3 0.87664 0.85912 25.963 2 Median 0.87664 0.85912 25.963 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13837000 7301500 6535700 13837000 7301500 6535700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17419 1894 18162 90662;90663;90664 92402;92403;92404;92405;92406;92407 92405 6 KHSQFIGYPITLYLEK QTEYLEERRVKEVVKKHSQFIGYPITLYLE HSQFIGYPITLYLEKEREKEISDDEAEEEK K K H E K E 0 0 0 0 0 1 1 1 1 2 2 2 0 1 1 1 1 0 2 0 0 0 16 1 1936.0458 P08238;Q58FF7 P08238 204 219 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 3 3.2719E-05 58.671 By MS/MS By MS/MS By matching 1 4 1 0.94289 0.91283 8.4738 6 Median 1.021 1.0485 NaN 1 0 Median 0.93096 0.90116 5.989 4 0 Median NaN NaN NaN 0 0 Median 0.94768 0.92579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38194000 19600000 18593000 13516000 6395500 7120700 24525000 13120000 11404000 0 0 0 152590 84329 68260 0 0 0 0 0 0 17420 1899 18163 90665;90666;90667;90668;90669;90670 92408;92409;92410;92411;92412;92413;92414;92415 92414 8 KHTLSYVDVGTGK PIQGQQKKPFEEHWRKHTLSYVDVGTGKVT WRKHTLSYVDVGTGKVTLEYRPVIDKTLNE R K H G K V 0 0 0 1 0 0 0 2 1 0 1 2 0 0 0 1 2 0 1 2 0 0 13 1 1403.7409 P31040;D6RFM5;A0A087X1I3 P31040 624 636 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 0.00010446 73.466 By MS/MS By MS/MS 1 1 1.4099 1.3235 15.52 2 Median 1.2571 1.186 NaN 1 0 Median 1.5813 1.477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14784000 6040000 8744400 5731800 2706300 3025400 9052600 3333600 5719000 0 0 0 0 0 0 0 0 0 0 0 0 17421 2200 18164 90671;90672 92416;92417;92418;92419 92417 4 KHVTTAEGTPGTTDQEGPPPDGPPEK LLPSRPHAPCPPAPRKHVTTAEGTPGTTDQ TTDQEGPPPDGPPEKRITATMDDMLSTRSS R K H E K R 1 0 0 2 0 1 3 4 1 0 0 2 0 0 6 0 5 0 0 1 0 0 26 1 2642.246 O14497;H0Y488;A0A1B0GTU5 O14497 1880 1905 ARID1A AT-rich interactive domain-containing protein 1A yes no 3;4 0.0041259 22.981 By MS/MS By MS/MS 1 2 0.51617 0.48132 12.352 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34299 0.39324 NaN 1 1 Median 0.52164 0.48664 1.554 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3617500 2569900 1047600 0 0 0 0 0 0 1971700 1447100 524660 1645700 1122800 522920 0 0 0 0 0 0 17422 1480 18165 90673;90674;90675 92420;92421;92422;92423;92424 92423 5 KHVTTAEGTPGTTDQEGPPPDGPPEKR LLPSRPHAPCPPAPRKHVTTAEGTPGTTDQ TDQEGPPPDGPPEKRITATMDDMLSTRSST R K H K R I 1 1 0 2 0 1 3 4 1 0 0 2 0 0 6 0 5 0 0 1 0 0 27 2 2798.3471 O14497;H0Y488;A0A1B0GTU5 O14497 1880 1906 ARID1A AT-rich interactive domain-containing protein 1A yes no 4;5 0.003627 28.145 By MS/MS By MS/MS 2 1 0.30584 0.40407 18.651 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29395 0.38836 5.6062 2 1 Median 0.47576 0.53251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7421900 5431200 1990700 0 0 0 0 0 0 5948000 4529900 1418100 1473900 901310 572630 0 0 0 0 0 0 17423 1480 18166 90676;90677;90678 92425;92426;92427;92428 92427 4 KIADDKYNDTFWK VIRKKLVRKTLDMIKKIADDKYNDTFWKEF IKKIADDKYNDTFWKEFGTNIKLGVIEDHS K K I W K E 1 0 1 3 0 0 0 0 0 1 0 3 0 1 0 0 1 1 1 0 0 0 13 2 1642.7991 P14625 P14625 474 486 HSP90B1 Endoplasmin yes yes 3 0.0019543 38.366 By MS/MS By MS/MS 1 1 1.2053 1.2189 9.8666 2 Median 1.0844 1.1368 NaN 1 0 Median 1.3396 1.307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31135000 13156000 17979000 14321000 6364100 7956900 16814000 6791600 10022000 0 0 0 0 0 0 0 0 0 0 0 0 17424 2006 18167 90679;90680 92429;92430;92431 92429 3 KIAELCDDPK PEGEEQIRGALAEARKIAELCDDPKERDDI LAEARKIAELCDDPKERDDILRSLGEISAL R K I P K E 1 0 0 2 1 0 1 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 10 1 1187.5856 P18206 P18206 417 426 VCL Vinculin yes yes 2 0.013243 45.368 By MS/MS 1 1.2505 1.1619 NaN 1 Median NaN NaN NaN 0 0 Median 1.2505 1.1619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7008600 3267300 3741300 0 0 0 7008600 3267300 3741300 0 0 0 0 0 0 0 0 0 0 0 0 17425 2057 18168 90681 92432;92433 92433 2 KIAELCDDPKER PEGEEQIRGALAEARKIAELCDDPKERDDI EARKIAELCDDPKERDDILRSLGEISALTS R K I E R D 1 1 0 2 1 0 2 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 12 2 1472.7293 P18206 P18206 417 428 VCL Vinculin yes yes 3 0.00020394 66.285 By MS/MS 1 0.77935 0.7721 NaN 1 Median NaN NaN NaN 0 0 Median 0.77935 0.7721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6746800 3487200 3259600 0 0 0 6746800 3487200 3259600 0 0 0 0 0 0 0 0 0 0 0 0 17426 2057 18169 90682 92434 92434 1 KIAELEEEQSQGSTTNSDWMK IGDDNLPGINSMLQRKIAELEEEQSQGSTT EEQSQGSTTNSDWMKNLISPDLGVVFLNVP R K I M K N 1 0 1 1 0 2 4 1 0 1 1 2 1 0 0 3 2 1 0 0 0 0 21 1 2410.0958 P46821;D6RA32;D6RA40 P46821 327 347 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 6.5238E-12 66.045 By matching By MS/MS By MS/MS 2 2 1 0.95172 1.0794 36.907 5 Median 0.85822 0.89547 66.907 2 0 Median NaN NaN NaN 0 0 Median 0.82362 0.94301 19.101 2 0 Median 1.2841 1.203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32613000 16697000 15916000 14248000 6376800 7870800 0 0 0 16603000 9594200 7008900 1762400 726340 1036100 0 0 0 0 0 0 17427 2347 18170 90683;90684;90685;90686;90687 92435;92436;92437 92435 3 KIAELMPGASGAEVK IHSRKMNLTRGINLRKIAELMPGASGAEVK KIAELMPGASGAEVKGVCTEAGMYALRERR R K I V K G 3 0 0 0 0 0 2 2 0 1 1 2 1 0 1 1 0 0 0 1 0 0 15 1 1499.8018 P62195 P62195 346 360 PSMC5 26S protease regulatory subunit 8 yes yes 3 0.0011865 35.527 By MS/MS 1 0.90371 0.86802 NaN 1 Median 0.90371 0.86802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4714700 2468800 2245900 4714700 2468800 2245900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17428 2572 18171 90688 92438;92439 92439 2 KIAFAITAIK QHILRVLNTNIDGRRKIAFAITAIKGVGRR IDGRRKIAFAITAIKGVGRRYAHVVLRKAD R K I I K G 3 0 0 0 0 0 0 0 0 3 0 2 0 1 0 0 1 0 0 0 0 0 10 1 1074.6801 P62269;A0A0G2JQH2;Q5GGW2 P62269 25 34 RPS18 40S ribosomal protein S18 yes no 2 0.00059187 75.652 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.1428 1.1465 15.326 8 Median 0.96212 0.92613 23.25 2 0 Median 1.294 1.1332 9.2843 2 0 Median 1.1428 1.1465 3.3262 2 0 Median 1.4138 1.2718 NaN 1 0 Median 1.0847 1.2471 NaN 1 0 Median NaN NaN NaN 0 0 Median 171120000 81580000 89540000 119940000 57786000 62152000 19580000 8965300 10615000 23504000 11273000 12231000 1092700 454870 637850 7005300 3101200 3904100 0 0 0 17429 2578 18172 90689;90690;90691;90692;90693;90694;90695;90696 92440;92441;92442;92443;92444 92444 5 KIAILGYR ______________________________ MPQSKSRKIAILGYRSVGKSSLTIQFVEGQ R K I Y R S 1 1 0 0 0 0 0 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 1 932.58074 Q15382;F8WBL3 Q15382 8 15 RHEB GTP-binding protein Rheb yes no 2 0.030357 45.718 By MS/MS By MS/MS By matching 1 1 1 1.3487 1.2602 34.81 3 Plateau 1.3859 1.3677 NaN 1 0 Median 1.1362 1.0027 NaN 1 0 Median 0.66795 0.68266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18941000 8581700 10359000 11411000 5022900 6388300 6731200 3053800 3677400 798210 505020 293190 0 0 0 0 0 0 0 0 0 17430 2943 18173 90697;90698;90699 92445;92446 92445 2 KIANVVINQSANDSK KSNDSTDGEPEEKRRKIANVVINQSANDSK KIANVVINQSANDSKVLIDNIPDSSSLIEE R K I S K V 2 0 3 1 0 1 0 0 0 2 0 2 0 0 0 2 0 0 0 2 0 0 15 1 1599.858 A0A0A0MTH9;O14981 A0A0A0MTH9 248 262 BTAF1 TATA-binding protein-associated factor 172 yes no 3 0.00035738 38.995 By MS/MS By MS/MS 1 1 0.9457 0.98185 9.0065 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90808 1.0464 NaN 1 0 Median 0.98488 0.92127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119100 2236300 2882800 0 0 0 0 0 0 3779700 1662700 2117000 1339300 573580 765760 0 0 0 0 0 0 17431 191 18174 90700;90701 92447;92448;92449 92449 3 KIAVAAASKPAVEIK FEELLKVLGVNVMLRKIAVAAASKPAVEIK KIAVAAASKPAVEIKQEGDTFYIKTSTTVR R K I I K Q 5 0 0 0 0 0 1 0 0 2 0 3 0 0 1 1 0 0 0 2 0 0 15 2 1494.9134 P29373;Q5SYZ4 P29373 31 45 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2;3 8.5981E-10 101.01 By MS/MS By MS/MS 1 2 1.7561 1.401 51.512 3 Median 0.60131 0.60733 NaN 1 0 Median 1.8495 1.4755 7.3267 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39960000 16614000 23346000 8606900 5062300 3544600 31353000 11552000 19801000 0 0 0 0 0 0 0 0 0 0 0 0 17432 2171 18175 90702;90703;90704 92450;92451;92452;92453 92452 4 KICAVGITK IIIPEIQKVSGNVEKKICAVGITKLLTECP SGNVEKKICAVGITKLLTECPPMMDTEYTK K K I T K L 1 0 0 0 1 0 0 1 0 2 0 2 0 0 0 0 1 0 0 1 0 0 9 1 988.57394 P55060 P55060 840 848 CSE1L Exportin-2 yes yes 2 0.042806 36.334 By MS/MS 1 2.2283 2.1541 NaN 1 Median NaN NaN NaN 0 0 Median 2.2283 2.1541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1179300 399010 780250 0 0 0 1179300 399010 780250 0 0 0 0 0 0 0 0 0 0 0 0 17433 2493 18176 90705 92454 92454 1 KICLDQQNPLYK HCPSPQLIATLKTGRKICLDQQNPLYKKII TGRKICLDQQNPLYKKIIKRLLKS______ R K I Y K K 0 0 1 1 1 2 0 0 0 1 2 2 0 0 1 0 0 0 1 0 0 0 12 1 1518.7864 CON__P02777 CON__P02777 210 221 yes yes 2;3 0.0011137 59.57 By MS/MS By MS/MS 2 1 0.13313 0.13536 132.36 3 Median NaN NaN NaN 0 0 Median 0.17423 0.15104 186.97 2 2 Median 0.13313 0.13536 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23702000 16286000 7416200 0 0 0 17990000 11292000 6697600 5712200 4993600 718600 0 0 0 0 0 0 0 0 0 + 17434 747 18177 90706;90707;90708 92455;92456;92457 92456 3 KIDAAQNWLADPNGGPEGEEQIR RKLEAMTNSKQSIAKKIDAAQNWLADPNGG LADPNGGPEGEEQIRGALAEARKIAELCDD K K I I R G 3 1 2 2 0 2 3 3 0 2 1 1 0 0 2 0 0 1 0 0 0 0 23 1 2507.2041 P18206 P18206 387 409 VCL Vinculin yes yes 3 1.5493E-05 51.645 By MS/MS By MS/MS By MS/MS 1 1 2 0.59464 0.61498 43.052 4 Median 0.36672 0.38215 NaN 1 1 Median 0.63466 0.59915 NaN 1 0 Median 0.67893 0.83063 38.825 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24124000 15781000 8343600 12384000 8502300 3881400 2862600 1682000 1180700 8878100 5596600 3281500 0 0 0 0 0 0 0 0 0 17435 2057 18178 90709;90710;90711;90712 92458;92459;92460;92461 92458 4 KIDGAEPLTPEETEEKEK PDIPNPALAQREEQKKIDGAEPLTPEETEE GAEPLTPEETEEKEKLLTQGFTNWTKRDFN K K I E K L 1 0 0 1 0 0 6 1 0 1 1 3 0 0 2 0 2 0 0 0 0 0 18 2 2042.0055 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 822 839 SMARCA1 Probable global transcription activator SNF2L1 no no 3 2.1167E-06 60.334 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.80915 0.86458 21.419 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60744 0.72993 NaN 1 0 Median 0.94459 0.96732 NaN 1 0 Median 0.69314 0.77275 NaN 1 0 Median 1.0701 1.1627 NaN 1 0 Median 27813000 15695000 12118000 0 0 0 0 0 0 15248000 9581700 5666000 4187600 1819300 2368200 7242700 3829000 3413700 1135200 465270 669970 17436 167;643 18179 90713;90714;90715;90716 92462;92463;92464;92465;92466;92467;92468;92469;92470 92464 9 KIDGLLIDQIQR TRYFGGMVWYFVNNKKIDGLLIDQIQRDLI NNKKIDGLLIDQIQRDLIDDATNLVQLYHV K K I Q R D 0 1 0 2 0 2 0 1 0 3 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1410.8195 G5E9W7;G5E9V5;P82650;H7C5L9 G5E9W7 239 250 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2;3 0.00096107 44.616 By MS/MS By matching By matching 2 1 1 1.0541 1.1426 12.846 4 Median 1.0279 1.1012 1.8288 2 1 Median 1.5778 1.4422 NaN 1 0 Median 1.0671 1.1703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11963000 5303500 6659300 8927600 4082000 4845500 1098800 404810 694030 1936300 816610 1119700 0 0 0 0 0 0 0 0 0 17437 1130 18180 90717;90718;90719;90720 92471;92472 92471 2 KIDKYLYAMR LLAYYFTELKDDQVKKIDKYLYAMRLSDET DDQVKKIDKYLYAMRLSDETLIDIMTRFRK K K I M R L 1 1 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 0 2 0 0 0 10 2 1299.7009 P19367 P19367 21 30 HK1 Hexokinase-1 yes yes 2 0.074075 49.813 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17438 2064 18181 90721 92473 92473 1 KIDKYTEVLK QLMRLRKQAEKNVEKKIDKYTEVLKTHGLL KNVEKKIDKYTEVLKTHGLLV_________ K K I L K T 0 0 0 1 0 0 1 0 0 1 1 3 0 0 0 0 1 0 1 1 0 0 10 2 1235.7125 P40429;M0QYS1;Q8J015 P40429 188 197 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2;3 0.0001406 97.439 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 2 2 3 1.1433 1.2312 19.432 20 Median 1.1639 1.3156 20.599 8 0 Median 1.1216 1.0923 7.3333 5 0 Median 1.0753 1.2133 1.287 2 0 Median 1.2487 1.1481 12.422 2 0 Median 1.1684 1.2784 31.867 3 0 Median NaN NaN NaN 0 0 Median 225290000 102380000 122900000 37785000 16876000 20909000 45030000 21153000 23877000 35424000 16762000 18662000 16976000 7929500 9046600 90071000 39664000 50407000 0 0 0 17439 2288 18182 90722;90723;90724;90725;90726;90727;90728;90729;90730;90731;90732;90733;90734;90735;90736;90737;90738;90739;90740;90741 92474;92475;92476;92477;92478;92479;92480;92481;92482;92483;92484;92485;92486;92487;92488;92489;92490;92491;92492;92493;92494;92495;92496;92497 92488 24 KIDLEAEK NNIIYVADTENHLIRKIDLEAEKVSTVAGI TENHLIRKIDLEAEKVSTVAGIGIQGTDKE R K I E K V 1 0 0 1 0 0 2 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 8 1 944.51786 Q8NBF2 Q8NBF2 303 310 NHLRC2 NHL repeat-containing protein 2 yes yes 2 0.020332 51.346 By matching By MS/MS 1 2 0.76502 0.79381 46.566 3 Median 0.76502 0.79381 NaN 1 0 Median 0.75563 0.7083 65.193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4863200 2393400 2469800 946680 442030 504660 3916500 1951300 1965100 0 0 0 0 0 0 0 0 0 0 0 0 17440 3402 18183 90742;90743;90744 92498;92499 92498 2 KIDQDVVITNSYETAMR PSSEKDSNAEEDSNKKIDQDVVITNSYETA DQDVVITNSYETAMRTAQNFLSIFLKKCGS K K I M R T 1 1 1 2 0 1 1 0 0 2 0 1 1 0 0 1 2 0 1 2 0 0 17 1 1981.9779 A0A590UJS4;Q6KC79 A0A590UJS4 1520 1536 NIPBL Nipped-B-like protein yes no 3 5.2991E-06 68.129 By MS/MS By MS/MS 1 1 0.8668 0.99176 9.2137 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80315 0.9292 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93551 1.0585 NaN 1 0 Median NaN NaN NaN 0 0 Median 8867600 4520100 4347400 0 0 0 0 0 0 3725200 1966400 1758800 0 0 0 5142400 2553800 2588600 0 0 0 17441 488 18184 90745;90746 92500;92501;92502 92502 3 KIDQEGKIPDETLEK LGPVEKFFTEEVDSRKIDQEGKIPDETLEK KIDQEGKIPDETLEKLKSLGLFGLQVPEEY R K I E K L 0 0 0 2 0 1 3 1 0 2 1 3 0 0 1 0 1 0 0 0 0 0 15 2 1741.9098 Q9H845;D6RCD8 Q9H845 86 100 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 3 3.5401E-05 80.102 By MS/MS By MS/MS By MS/MS 1 1 1 1.2139 1.0796 27.214 3 Median 0.6893 0.7034 NaN 1 0 Median 1.2139 1.1655 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2302 1.0796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38192000 19646000 18546000 26935000 14729000 12205000 9490500 4184800 5305700 0 0 0 1766500 731790 1034700 0 0 0 0 0 0 17442 3988 18185 90747;90748;90749 92503;92504;92505;92506;92507 92506 5 KIDTHPSPSHSSTVKDSLIELK PRSDIPEPEREQKRRKIDTHPSPSHSSTVK PSHSSTVKDSLIELKESSAKLYINHTPPPL R K I L K E 0 0 0 2 0 0 1 0 2 2 2 3 0 0 2 5 2 0 0 1 0 0 22 2 2418.2755 Q8NI27;A0A0C4DG98;H0Y594 Q8NI27 1411 1432 THOC2 THO complex subunit 2 yes no 4 0.067133 7.2761 By MS/MS 1 0.56222 0.65138 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56222 0.65138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5613700 3332300 2281400 0 0 0 0 0 0 5613700 3332300 2281400 0 0 0 0 0 0 0 0 0 17443 3448 18186 90750 92508 92508 1 KIDYFER KEKKELQERLKNQEKKIDYFERAKRLEEIP ERLKNQEKKIDYFERAKRLEEIPLIKSAYE K K I E R A 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 1 969.49198 Q14152 Q14152 694 700 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.020905 73.616 By MS/MS By MS/MS By matching 2 2 1 1.2414 1.3058 19.189 5 Median 1.2419 1.2671 4.3666 2 0 Median 1.5916 1.4812 34.517 2 0 Median 1.1465 1.3058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54516000 23385000 31131000 22359000 10138000 12221000 30076000 12550000 17526000 2081500 697300 1384200 0 0 0 0 0 0 0 0 0 17444 2860 18187 90751;90752;90753;90754;90755 92509;92510;92511 92511 3 KIEAEIVR AWSNPLHPDIFPGLRKIEAEIVRIACSLFN DIFPGLRKIEAEIVRIACSLFNGGPDSCGC R K I V R I 1 1 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 8 1 956.56548 H0Y3V8;H7BXL7;O95470 H0Y3V8 97 104 SGPL1 Sphingosine-1-phosphate lyase 1 yes no 2 0.03924 41.029 By matching By MS/MS By matching By matching 1 1 2 1 1.247 1.145 13.593 5 Median 1.0998 1.1219 NaN 1 0 Median 1.2799 1.1697 NaN 1 0 Median 1.1361 1.256 25.067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.247 1.145 NaN 1 0 Median 3767300 1691400 2075900 581260 269730 311530 1893700 864510 1029200 964720 423770 540960 0 0 0 0 0 0 327600 133360 194250 17445 1145 18188 90756;90757;90758;90759;90760 92512;92513 92512 2 KIEDLEKEVVR ANVSGTLVSSSTLEKKIEDLEKEVVRERQE TLEKKIEDLEKEVVRERQENLRLVRLMQDK K K I V R E 0 1 0 1 0 0 3 0 0 1 1 2 0 0 0 0 0 0 0 2 0 0 11 2 1356.7613 Q96IZ0;H0YHP5 Q96IZ0 271 281 PAWR PRKC apoptosis WT1 regulator protein yes no 3 6.3444E-05 75.695 By MS/MS 3 0.71983 0.72005 30.973 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71983 0.72005 30.973 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9762700 5660900 4101800 0 0 0 0 0 0 0 0 0 9762700 5660900 4101800 0 0 0 0 0 0 17446 3681 18189 90761;90762;90763 92514;92515 92515 2 KIEDLGAAMEEALILDNK KRKHQEIRAMRSQLKKIEDLGAAMEEALIL DLGAAMEEALILDNKYTEHSTVGLAQQWDQ K K I N K Y 3 0 1 2 0 0 3 1 0 2 3 2 1 0 0 0 0 0 0 0 0 0 18 1 1972.0187 A0A0D9SF54;Q13813 Q13813 2264 2281 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.7485E-12 107.72 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.0386 1.0841 45.778 8 Median 1.7921 1.8939 39.811 2 0 Median 1.0515 0.99831 17.434 3 0 Median 0.93038 1.0696 13.57 2 0 Median NaN NaN NaN 0 0 Median 0.4451 0.49778 NaN 1 0 Median NaN NaN NaN 0 0 Median 17329000 8190100 9139100 2041200 842090 1199100 9261700 4271500 4990200 5737800 2911900 2826000 0 0 0 288490 164660 123830 0 0 0 17447 264;2838 18190 90764;90765;90766;90767;90768;90769;90770;90771 92516;92517;92518;92519;92520 92520 5 KIEDLIK GNISSKRERVKILYKKIEDLIKYLDPEYID ERVKILYKKIEDLIKYLDPEYIDRIAIPDA K K I I K Y 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 7 1 857.52222 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 60 66 DCTN3 Dynactin subunit 3 yes no 2 0.02854 60.76 By matching By MS/MS By matching By matching 2 1 1 1 1.2217 1.175 18.882 5 Median 1.2672 1.2797 12.069 2 0 Median 1.2217 1.0804 NaN 1 0 Median 0.89187 0.88998 NaN 1 0 Median 1.5497 1.3944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26405000 12106000 14299000 12961000 5969200 6992300 6493600 2771300 3722200 5466300 2828600 2637700 1483600 537150 946460 0 0 0 0 0 0 17448 1708 18191 90772;90773;90774;90775;90776 92521 92521 1 KIEDNNTLVFIVDVK YAIIKFPLTTESAMKKIEDNNTLVFIVDVK KIEDNNTLVFIVDVKANKHQIKQAVKKLYD K K I V K A 0 0 2 2 0 0 1 0 0 2 1 2 0 1 0 0 1 0 0 3 0 0 15 1 1745.9564 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 91 105 RPL23A 60S ribosomal protein L23a yes no 2;3 6.3465E-09 119.39 By MS/MS By matching 2 1 1.0013 1.1021 10.304 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95516 1.0981 6.6703 2 0 Median 1.1109 0.93702 NaN 1 0 Median 17854000 9335000 8518900 0 0 0 0 0 0 0 0 0 0 0 0 16763000 8817500 7945800 1090600 517490 573110 17449 544 18192 90777;90778;90779 92522;92523;92524;92525 92524 4 KIEEAMDGSETPQLFTVLPEKR PAGMETPELIELRKKKIEEAMDGSETPQLF GSETPQLFTVLPEKRTATVGGAMMGSTHIY K K I K R T 1 1 0 1 0 1 4 1 0 1 2 2 1 1 2 1 2 0 0 1 0 0 22 2 2517.2785 Q13435;E9PPJ0 Q13435 770 791 SF3B2 Splicing factor 3B subunit 2 yes no 4 0.063015 15.699 By MS/MS 1 0.61925 0.72975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61925 0.72975 NaN 1 1 Median NaN NaN NaN 0 0 Median 4842500 3030800 1811700 0 0 0 0 0 0 0 0 0 0 0 0 4842500 3030800 1811700 0 0 0 17450 2817 18193 90780 92526 92526 1 KIEEGIEFVK FIITASHDGHVKFWKKIEEGIEFVKHFRSH VKFWKKIEEGIEFVKHFRSHLGVIESIAVS K K I V K H 0 0 0 0 0 0 3 1 0 2 0 2 0 1 0 0 0 0 0 1 0 0 10 1 1190.6547 Q96BP3;F5H7P7;D6R9Q1;D6RD43 Q96BP3 118 127 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2;3 0.001506 73.327 By MS/MS By MS/MS 3 1 1.1364 1.2661 34.128 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8358 0.94211 41.799 2 1 Median 1.296 1.2661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30155000 11490000 18665000 0 0 0 0 0 0 27436000 10296000 17140000 2718700 1193500 1525100 0 0 0 0 0 0 17451 3609 18194 90781;90782;90783;90784 92527;92528;92529 92529 3 KIEEIKDFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN R K I A R R 1 1 0 1 0 0 2 0 0 2 2 2 0 1 0 0 1 0 0 0 0 0 13 2 1574.9032 P63173;J3KT73;J3QL01;J3KSP2 P63173 4 16 RPL38 60S ribosomal protein L38 yes no 2;3;4 3.2498E-08 169.52 By MS/MS By matching By MS/MS By MS/MS 3 2 3 2 1.1223 1.106 20.495 9 Median 1.0208 1.106 13.784 3 0 Median 1.2277 1.1127 5.7377 2 0 Median 1.1021 1.2438 2.5595 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0326 0.78474 13.2 2 0 Median 306570000 137270000 169300000 14777000 6818200 7958300 3474600 1552000 1922600 208290000 92626000 115670000 0 0 0 0 0 0 80026000 36270000 43757000 17452 2622 18195 90785;90786;90787;90788;90789;90790;90791;90792;90793;90794 92530;92531;92532;92533;92534;92535;92536;92537;92538;92539;92540;92541 92537 12 KIEEINNGLHNVEK SNEVLKSSPSYAMRRKIEEINNGLHNVEKM RKIEEINNGLHNVEKMLQQKSKNIEKAQEI R K I E K M 0 0 3 0 0 0 3 1 1 2 1 2 0 0 0 0 0 0 0 1 0 0 14 1 1635.858 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3691 3704 SYNE2 Nesprin-2 yes no 3 0.022719 30.961 By MS/MS 1 1.2782 1.2144 NaN 1 Median NaN NaN NaN 0 0 Median 1.2782 1.2144 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1410500 566970 843560 0 0 0 1410500 566970 843560 0 0 0 0 0 0 0 0 0 0 0 0 17453 3521 18196 90795 92542 92542 1 KIEEQLTLEK ILLPDDIEDESTGLKKIEEQLTLEKLHEWT STGLKKIEEQLTLEKLHEWTKPENLDFIEV K K I E K L 0 0 0 0 0 1 3 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1229.6867 P30740 P30740 245 254 SERPINB1 Leukocyte elastase inhibitor yes yes 2 0.00058549 76.228 By MS/MS By MS/MS By MS/MS 1 1 1 1.1543 1.0725 4.831 3 Plateau 1.1543 1.0725 NaN 1 0 Median 1.1859 1.0716 NaN 1 0 Median 0.90483 0.98602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19921000 9137900 10783000 12462000 5568500 6893800 4853600 2201600 2652000 2604800 1367800 1237000 0 0 0 0 0 0 0 0 0 17454 2197 18197 90796;90797;90798 92543;92544;92545;92546 92543 4 KIEESETIEDSSNQAAAR DTGEYTREPGFIVVKKIEESETIEDSSNQA ESETIEDSSNQAAAREWELTKHLPPRTIGY K K I A R E 3 1 1 1 0 1 4 0 0 2 0 1 0 0 0 3 1 0 0 0 0 0 18 1 1976.9287 H0YC07;Q8N573 H0YC07 346 363 OXR1 Oxidation resistance protein 1 yes no 3 1.8756E-05 48.547 By MS/MS 1 1.2852 1.3337 NaN 1 Median 1.2852 1.3337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2356500 1141100 1215300 2356500 1141100 1215300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17455 1171 18198 90799 92547;92548;92549 92548 3 KIEEVRDAMENEMR ALEHHRSEIQAEQDRKIEEVRDAMENEMRT RKIEEVRDAMENEMRTQLRRQAAAHTDHLR R K I M R T 1 2 1 1 0 0 4 0 0 1 0 1 2 0 0 0 0 0 0 1 0 0 14 2 1748.8186 Q16891;B9A067;C9J406;H7C463 Q16891 467 480 IMMT MICOS complex subunit MIC60 yes no 2;3 0.00082448 42.568 By MS/MS By matching 2 1 0.95723 0.92438 20.553 3 Median 0.79326 0.80016 26.572 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0664 0.92438 NaN 1 0 Median 32231000 15629000 16602000 29299000 14306000 14993000 0 0 0 0 0 0 0 0 0 0 0 0 2932500 1322700 1609800 17456 3001 18199 90800;90801;90802 92550;92551;92552 92550 3 KIEEVVER KEEIFGPVQPLFKFKKIEEVVERANNTRYG QPLFKFKKIEEVVERANNTRYGLAAAVFTR K K I E R A 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 8 1 1000.5553 P30837 P30837 429 436 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 0.022798 62.546 By MS/MS 1 1.1149 1.0188 NaN 1 Median NaN NaN NaN 0 0 Median 1.1149 1.0188 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1991000 927320 1063600 0 0 0 1991000 927320 1063600 0 0 0 0 0 0 0 0 0 0 0 0 17457 2199 18200 90803 92553 92553 1 KIEFDDLEVTR QHNTLDKSAKLIKEKKIEFDDLEVTRKKLV IKEKKIEFDDLEVTRKKLVDDCHHFRLEEP K K I T R K 0 1 0 2 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 11 1 1363.6983 Q8NCM8;A0A3B3ISP9 Q8NCM8 1087 1097 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 3 0.0018107 42.083 By MS/MS By matching 1 1 1.1031 1.1055 51.664 2 Median 0.74755 0.76719 NaN 1 0 Median 1.6278 1.593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4092300 1850100 2242300 3344200 1563000 1781200 748140 287020 461120 0 0 0 0 0 0 0 0 0 0 0 0 17458 3418 18201 90804;90805 92554 92554 1 KIEFLRPGYK KKMKKHKNKSEAKKRKIEFLRPGYKAKRQK EAKKRKIEFLRPGYKAKRQKSHSLKDLAMV R K I Y K A 0 1 0 0 0 0 1 1 0 1 1 2 0 1 1 0 0 0 1 0 0 0 10 2 1249.7183 O75691 O75691 2760 2769 UTP20 Small subunit processome component 20 homolog yes yes 3 0.0014032 53.756 By MS/MS By MS/MS 1 1 1.2061 1.4302 10.586 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0045 1.3271 NaN 1 0 Median 1.4482 1.5414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9165200 4218500 4946700 0 0 0 0 0 0 7242300 3399500 3842800 1922900 818940 1103900 0 0 0 0 0 0 17459 1691 18202 90806;90807 92555;92556 92556 2 KIEFPLPDRR DTLDPALLRPGRLDRKIEFPLPDRRQKRLI GRLDRKIEFPLPDRRQKRLIFSTITSKMNL R K I R R Q 0 2 0 1 0 0 1 0 0 1 1 1 0 1 2 0 0 0 0 0 0 0 10 2 1269.7194 P43686 P43686 330 339 PSMC4 26S protease regulatory subunit 6B yes yes 3 0.0071986 36.585 By MS/MS 1 0.84787 0.94364 NaN 1 Median 0.84787 0.94364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4879300 2486500 2392800 4879300 2486500 2392800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17460 2327 18203 90808 92557 92557 1 KIEFSLPDLEGR DTLDPALMRPGRLDRKIEFSLPDLEGRTHI LDRKIEFSLPDLEGRTHIFKIHARSMSVER R K I G R T 0 1 0 1 0 0 2 1 0 1 2 1 0 1 1 1 0 0 0 0 0 0 12 1 1402.7456 P35998 P35998 340 351 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.0020643 52.79 By MS/MS 1 1.0754 0.98162 NaN 1 Median NaN NaN NaN 0 0 Median 1.0754 0.98162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6362400 2967500 3394900 0 0 0 6362400 2967500 3394900 0 0 0 0 0 0 0 0 0 0 0 0 17461 2253 18204 90809 92558 92558 1 KIEIGDGAELTAEFLYDEVHPK LLDSVEQDFHLEIAKKIEIGDGAELTAEFL AELTAEFLYDEVHPKQHAFKQAFAKPKGPG K K I P K Q 2 0 0 2 0 0 4 2 1 2 2 2 0 1 1 0 1 0 1 1 0 0 22 1 2473.2377 Q6IBS0 Q6IBS0 294 315 TWF2 Twinfilin-2 yes yes 3 0.051968 7.4461 By MS/MS 1 0.91726 0.82886 NaN 1 Median NaN NaN NaN 0 0 Median 0.91726 0.82886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4847700 2496900 2350800 0 0 0 4847700 2496900 2350800 0 0 0 0 0 0 0 0 0 0 0 0 17462 3138 18205 90810 92559;92560 92560 2 KIEILTPEVNK RLFGETDYDAFQRLRKIEILTPEVNKGLRN QRLRKIEILTPEVNKGLRNDLKAALDKIDQ R K I N K G 0 0 1 0 0 0 2 0 0 2 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1282.7497 Q5T9P8;Q5T9P7;Q99633 Q5T9P8 96 106 PRPF18 Pre-mRNA-splicing factor 18 yes no 2 0.0006946 68.657 By MS/MS 1 0.84944 0.92565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84944 0.92565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4005200 1801200 2204000 0 0 0 0 0 0 4005200 1801200 2204000 0 0 0 0 0 0 0 0 0 17463 3099 18206 90811 92561 92561 1 KIEISTIASNYHLEVNPSDAGNSDR KLRIEHQTITTPSKKKIEISTIASNYHLEV YHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ K K I D R V 2 1 3 2 0 0 2 1 1 3 1 1 0 0 1 4 1 0 1 1 0 0 25 1 2729.3257 P40938 P40938 81 105 RFC3 Replication factor C subunit 3 yes yes 3 1.0751E-05 36.576 By matching By MS/MS 1 1 1.0243 1.0786 22.198 2 Median 1.2915 1.2619 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81239 0.9219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8138800 3442200 4696600 5288800 1913100 3375800 0 0 0 2850000 1529100 1320900 0 0 0 0 0 0 0 0 0 17464 2294 18207 90812;90813 92562 92562 1 KIENIHIGEK KMVSIQITLNNTTDRKIENIHIGEKKLPIG NTTDRKIENIHIGEKKLPIGMKMHVFNPID R K I E K K 0 0 1 0 0 0 2 1 1 3 0 2 0 0 0 0 0 0 0 0 0 0 10 1 1179.6612 O00203;H0YBD0 O00203 913 922 AP3B1 AP-3 complex subunit beta-1 yes no 2 0.020876 38.804 By MS/MS 1 0.89589 0.83682 NaN 1 Median NaN NaN NaN 0 0 Median 0.89589 0.83682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2693300 1298400 1394900 0 0 0 2693300 1298400 1394900 0 0 0 0 0 0 0 0 0 0 0 0 17465 1447 18208 90814 92563 92563 1 KIENLQEQLR DMLDVKERKVNVLQKKIENLQEQLRDKEKQ NVLQKKIENLQEQLRDKEKQMSSLKERVKS K K I L R D 0 1 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1269.7041 O15083;H7C4G9;X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 579 588 ERC2;ERC1 ERC protein 2;ELKS/Rab6-interacting/CAST family member 1 no no 2;3 0.00025282 68.893 By MS/MS By MS/MS By MS/MS 1 1 1 0.96619 0.90489 12.194 3 Median 0.867 0.89694 NaN 1 0 Median 0.96619 0.90489 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1577 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9718300 4622300 5095900 1312500 757250 555210 5531000 2701600 2829400 0 0 0 2874800 1163500 1711400 0 0 0 0 0 0 17466 3311;1519 18209 90815;90816;90817 92564;92565;92566;92567;92568 92568 5 KIENVPTGPNNKPK HVVFGKIIDGLLVMRKIENVPTGPNNKPKL RKIENVPTGPNNKPKLPVV___________ R K I P K L 0 0 3 0 0 0 1 1 0 1 0 3 0 0 3 0 1 0 0 1 0 0 14 2 1534.8467 C9JQD4;O43447;H0YEL5 C9JQD4 127 140 PPIH Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase H yes no 3 0.056603 13.865 By matching By MS/MS By matching By matching 1 1 2 1 0.68274 0.6764 8.5796 5 Median 0.68274 0.73937 NaN 1 0 Median 0.75895 0.68484 NaN 1 0 Median 0.562 0.62856 10.375 2 0 Median 0.71216 0.65483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501000 3206800 2294100 959950 535260 424690 1626400 858670 767740 2432900 1518800 914130 481720 294130 187590 0 0 0 0 0 0 17467 717 18210 90818;90819;90820;90821;90822 92569 92569 1 KIEPELDGSAQVTSHDASTNGLINFIK SFDQWGVELGKQLAKKIEPELDGSAQVTSH TSHDASTNGLINFIKQQREARVQ_______ K K I I K Q 2 0 2 2 0 1 2 2 1 3 2 2 0 1 1 3 2 0 0 1 0 0 27 1 2883.4614 P06744;A0A2U3TZU2;K7EQ48 P06744 524 550 GPI Glucose-6-phosphate isomerase yes no 4 5.7167E-08 55.526 By MS/MS 2 0.9713 0.90727 2.798 2 Median 0.9713 0.90727 2.798 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43646000 22472000 21174000 43646000 22472000 21174000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17468 1875 18211 90823;90824 92570;92571;92572;92573 92570 4 KIEPFYK AAGVGRFKTNYAVERKIEPFYKGGKAQLDQ KTNYAVERKIEPFYKGGKAQLDQTGQHLFC R K I Y K G 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 0 0 0 1 0 0 0 7 1 923.51165 Q12788;H3BN88 Q12788 20 26 TBL3 Transducin beta-like protein 3 yes no 2 0.075674 38.792 By matching By MS/MS 1 1 1.0518 1.1114 11.048 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89939 1.0279 NaN 1 0 Median 1.2301 1.2017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1960400 953630 1006800 0 0 0 0 0 0 1028900 501550 527320 931580 452080 479490 0 0 0 0 0 0 17469 2757 18212 90825;90826 92574 92574 1 KIEQELTAAK DTEEMLSKKQEFLEKKIEQELTAAKKHGTK EFLEKKIEQELTAAKKHGTKNKRAALQALK K K I A K K 2 0 0 0 0 1 2 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1129.6343 Q9H444 Q9H444 46 55 CHMP4B Charged multivesicular body protein 4b yes yes 2 0.00044744 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1.2097 1.181 6.5942 7 Median 1.2125 1.181 NaN 1 0 Median 1.1956 1.0771 NaN 1 0 Median 1.2059 1.2647 NaN 1 0 Median 1.3763 1.2085 NaN 1 0 Median 1.1147 1.1658 10.609 2 0 Median 1.336 1.1379 NaN 1 0 Median 26655000 11745000 14911000 7817600 3433500 4384100 3770800 1779300 1991500 2830800 1404400 1426400 8092200 3369900 4722400 2336700 1022200 1314500 1807300 735490 1071800 17470 3961 18213 90827;90828;90829;90830;90831;90832;90833 92575;92576;92577;92578;92579;92580;92581;92582;92583 92582 9 KIEQELTAAKK DTEEMLSKKQEFLEKKIEQELTAAKKHGTK FLEKKIEQELTAAKKHGTKNKRAALQALKR K K I K K H 2 0 0 0 0 1 2 0 0 1 1 3 0 0 0 0 1 0 0 0 0 0 11 2 1257.7293 Q9H444 Q9H444 46 56 CHMP4B Charged multivesicular body protein 4b yes yes 3 0.063168 14.876 By MS/MS By matching By matching By matching 1 1 1 1 1.2452 1.2595 6.5267 4 Median 1.2713 1.328 NaN 1 0 Median 1.2027 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2611 1.1938 NaN 1 0 Median 1.2295 1.3453 NaN 1 0 Median NaN NaN NaN 0 0 Median 2083800 907630 1176200 589190 271200 317990 152010 62704 89304 0 0 0 656420 275720 380700 686200 298010 388190 0 0 0 17471 3961 18214 90834;90835;90836;90837 92584 92584 1 KIEQVDKEDEITEK DPSGDSTLPTCSKKRKIEQVDKEDEITEKK RKIEQVDKEDEITEKKAKKAKIKVKVEEEE R K I E K K 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3 Q9Y2X3 444 457 NOP58 Nucleolar protein 58 yes yes 2;3 2.0231E-10 172.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 3 5 5 1.0897 1.1205 18.085 18 Median 1.1211 1.144 NaN 1 0 Median 0.92843 0.88514 46.063 2 0 Median 0.88933 1.0508 16.019 2 0 Median 1.4075 1.2942 21.661 3 0 Median 0.95394 1.0635 7.2778 5 0 Median 1.2161 1.1387 8.6774 5 0 Median 134240000 67019000 67223000 3738000 1817400 1920600 7007900 2956400 4051400 14060000 6915100 7144700 2590900 970290 1620600 91559000 47446000 44113000 15287000 6914600 8372300 17472 4396 18215 90838;90839;90840;90841;90842;90843;90844;90845;90846;90847;90848;90849;90850;90851;90852;90853;90854;90855 92585;92586;92587;92588;92589;92590;92591;92592;92593;92594;92595;92596;92597;92598 92592 14 KIESFGSK HVVFGHVKEGMDVVKKIESFGSKSGRTSKK EGMDVVKKIESFGSKSGRTSKKIVITDCGQ K K I S K S 0 0 0 0 0 0 1 1 0 1 0 2 0 1 0 2 0 0 0 0 0 0 8 1 894.48108 P30405 P30405 183 190 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 2 0.0093967 70.525 By matching By matching By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 1.2765 1.1564 11.05 7 Median 1.0816 1.1013 3.9822 2 0 Median 1.3778 1.2178 NaN 1 0 Median 1.0754 1.074 NaN 1 0 Median 1.4075 1.2661 NaN 1 0 Median 1.2765 1.4676 NaN 1 0 Median 1.3324 1.1564 NaN 1 0 Median 6794100 3050700 3743400 960750 418460 542290 673400 262110 411290 3993300 1886900 2106300 977350 405360 571990 94832 37385 57447 94487 40406 54082 17473 2192 18216 90856;90857;90858;90859;90860;90861;90862 92599;92600;92601;92602;92603 92600 5 KIETFLNHYPVESSWIAPELR QRRPCTIQVPEPILRKIETFLNHYPVESSW NHYPVESSWIAPELRLQSDDILPLGKDSGP R K I L R L 1 1 1 0 0 0 3 0 1 2 2 1 0 1 2 2 1 1 1 1 0 0 21 1 2528.3064 H7BXY3;Q7L2E3 H7BXY3 329 349 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.007382 28.891 By MS/MS 1 0.9394 1.0699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9394 1.0699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2107100 1105100 1002000 0 0 0 0 0 0 2107100 1105100 1002000 0 0 0 0 0 0 0 0 0 17474 1244 18217 90863 92604 92604 1 KIEVIEIMTDR ______________________________ ______________________________ - K I D R G 0 1 0 1 0 0 2 0 0 3 0 1 1 0 0 0 1 0 0 1 0 0 11 1 1345.7275 H0YH80 H0YH80 1 11 HNRNPA1 yes yes 3 0.044182 15.387 By MS/MS By matching 2 1 1.2782 1.39 9.8927 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2782 1.39 0 2 0 Median NaN NaN NaN 0 0 Median 1.0851 1.1711 NaN 1 0 Median NaN NaN NaN 0 0 Median 14157000 7162000 6995100 0 0 0 0 0 0 11963000 6111400 5851900 0 0 0 2193800 1050600 1143200 0 0 0 17475 1183 18218 90864;90865;90866 92605 92605 1 KIEVIKPGDLGVDLTSK PRYATLPNIMKAKKKKIEVIKPGDLGVDLT EVIKPGDLGVDLTSKLSVISVEDPPQRTAG K K I S K L 0 0 0 2 0 0 1 2 0 2 2 3 0 0 1 1 1 0 0 2 0 0 17 2 1811.0404 P38117;M0QY67 P38117 205 221 ETFB Electron transfer flavoprotein subunit beta yes no 2;3 0.0086502 35.737 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 1.0246 1.0331 22.995 6 Median 0.8064 0.84698 16.283 2 0 Median 1.1667 1.1417 NaN 1 0 Median 0.78956 0.89088 NaN 1 0 Median 1.2214 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5604 1.461 NaN 1 0 Median 29882000 15941000 13941000 20528000 10937000 9591100 488120 222080 266050 7434000 4233500 3200500 1065200 451940 613290 0 0 0 367130 96561 270570 17476 2272 18219 90867;90868;90869;90870;90871;90872 92606;92607 92606 2 KIFDIDEAEEGVK DLNFFNQKKKKKKTKKIFDIDEAEEGVKDL TKKIFDIDEAEEGVKDLKIESDVQEPTEPE K K I V K D 1 0 0 2 0 0 3 1 0 2 0 2 0 1 0 0 0 0 0 1 0 0 13 1 1491.7457 P20042 P20042 87 99 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 2.8094E-05 89.403 By MS/MS By MS/MS 2 2 1.1915 1.0688 11.838 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1254 1.1769 8.1571 2 0 Median 1.037 0.98495 6.0774 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33660000 15129000 18531000 0 0 0 0 0 0 20428000 8863000 11565000 13232000 6266200 6965400 0 0 0 0 0 0 17477 2072 18220 90873;90874;90875;90876 92608;92609;92610;92611;92612;92613;92614 92608 7 KIFEYETQR PHGPVVGSTRRLYEKKIFEYETQRRRLSPP RRLYEKKIFEYETQRRRLSPPSSSAASSYS K K I Q R R 0 1 0 0 0 1 2 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 9 1 1212.6139 P50402 P50402 37 45 EMD Emerin yes yes 2 0.0038872 69.954 By matching By MS/MS 1 1 2.126 2.4031 88.369 2 Median NaN NaN NaN 0 0 Median 3.8263 4.489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1812 1.2865 NaN 1 0 Median NaN NaN NaN 0 0 Median 14907000 5642100 9264900 0 0 0 4002400 815990 3186500 0 0 0 0 0 0 10905000 4826200 6078500 0 0 0 17478 2412 18221 90877;90878 92615;92616 92616 2 KIFNLSGGEK EGIMFSVRPPKKSWKKIFNLSGGEKTLSSL KKSWKKIFNLSGGEKTLSSLALVFALHHYK K K I E K T 0 0 1 0 0 0 1 2 0 1 1 2 0 1 0 1 0 0 0 0 0 0 10 1 1091.5975 Q9NTJ3;E9PD53 Q9NTJ3 1187 1196 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.034385 35.908 By MS/MS By MS/MS 1 1 1.1787 1.1661 3.5483 2 Median 1.1303 1.1372 NaN 1 0 Median 1.2292 1.1957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4212300 1686600 2525600 2798800 1037600 1761300 1413400 649050 764380 0 0 0 0 0 0 0 0 0 0 0 0 17479 4108 18222 90879;90880 92617;92618;92619 92618 3 KIFSGVFVK VSLLVQRTIARLRLKKIFSGVFVKVTPQNL ARLRLKKIFSGVFVKVTPQNLKMLRIVEPY K K I V K V 0 0 0 0 0 0 0 1 0 1 0 2 0 2 0 1 0 0 0 2 0 0 9 1 1023.6117 Q6DKI1;R4GMU7 Q6DKI1 123 131 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.015375 47.869 By MS/MS By matching 1 1 1.0859 1.0481 12.884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0696 1.1481 NaN 1 0 Median 1.1025 0.95687 NaN 1 0 Median 22981000 10523000 12458000 0 0 0 0 0 0 0 0 0 0 0 0 19055000 8625100 10430000 3926200 1898300 2027900 17480 3132 18223 90881;90882 92620;92621 92620 2 KIFTFAEK EYLKVDAQFGGIDQRKIFTFAEKYLPALGY FGGIDQRKIFTFAEKYLPALGYSKRVHLMN R K I E K Y 1 0 0 0 0 0 1 0 0 1 0 2 0 2 0 0 1 0 0 0 0 0 8 1 982.54877 P54577;A0A0C4DGZ5 P54577 190 197 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.01152 64.265 By MS/MS By MS/MS By matching 1 1 1 1.1458 1.0671 10.886 3 Median 1.1037 1.0325 NaN 1 0 Median 1.1458 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3697 1.2647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44379000 20429000 23950000 17799000 8196200 9602700 25222000 11712000 13511000 0 0 0 1357900 521190 836700 0 0 0 0 0 0 17481 2482 18224 90883;90884;90885 92622;92623;92624 92623 3 KIFVGGIKEDTEEYNLR SREDSVKPGAHLTVKKIFVGGIKEDTEEYN FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K K I L R D 0 1 1 1 0 0 3 2 0 2 1 2 0 1 0 0 1 0 1 1 0 0 17 2 2010.0422 P51991 P51991 127 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3;4 1.6992E-63 232.6 By MS/MS By MS/MS By MS/MS By matching 9 3 4 4 1.0251 1.1549 16.156 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0229 1.1473 6.8534 9 0 Median 1.4265 1.427 9.3437 3 0 Median 0.97605 1.1271 16.902 4 3 Median 1.5528 1.4309 23.763 4 0 Median 556010000 272310000 283710000 0 0 0 0 0 0 454680000 222170000 232510000 12671000 5238700 7432700 78866000 40947000 37919000 9795400 3951400 5844100 17482 2446 18225 90886;90887;90888;90889;90890;90891;90892;90893;90894;90895;90896;90897;90898;90899;90900;90901;90902;90903;90904;90905 92625;92626;92627;92628;92629;92630;92631;92632;92633;92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644 92632 20 KIFVGGLNPEATEEK IDPKKAMAMKKDPVKKIFVGGLNPEATEEK KIFVGGLNPEATEEKIREYFGEFGEIEAIE K K I E K I 1 0 1 0 0 0 3 2 0 1 1 2 0 1 1 0 1 0 0 1 0 0 15 1 1630.8566 D6R9P3;D6RD18;D6RBZ0 D6R9P3 155 169 HNRNPAB yes no 2;3 6.6931E-05 69.258 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.7305 0.71965 19.367 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74199 0.77517 10.51 2 0 Median 0.57053 0.50803 NaN 1 0 Median 0.7305 0.77033 NaN 1 1 Median 0.74825 0.63686 NaN 1 0 Median 36226000 20070000 16156000 0 0 0 0 0 0 20750000 11311000 9438900 7445300 4511300 2934000 5778100 3111200 2666900 2252400 1136000 1116400 17483 805 18226 90906;90907;90908;90909;90910 92645;92646;92647;92648;92649 92646 5 KIFVGGLSPDTPEEK DPKRAKAMKTKEPVKKIFVGGLSPDTPEEK KIFVGGLSPDTPEEKIREYFGGFGEVESIE K K I E K I 0 0 0 1 0 0 2 2 0 1 1 2 0 1 2 1 1 0 0 1 0 0 15 1 1615.8457 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44 Q14103 183 197 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2;3 0.00025258 65.179 By MS/MS By MS/MS By MS/MS 2 1 2 0.68137 0.7272 107.55 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24894 0.26402 171.71 2 1 Median 1.2866 1.1456 NaN 1 1 Median 0.62282 0.66467 12.715 2 0 Median NaN NaN NaN 0 0 Median 76553000 50149000 26404000 0 0 0 0 0 0 53682000 38117000 15566000 6149400 2568400 3581000 16721000 9463400 7257600 0 0 0 17484 2854 18227 90911;90912;90913;90914;90915 92650;92651;92652;92653 92650 3 KIFVGTK RITPEEAKYKLCKVRKIFVGTKGIPHLVTH KYKLCKVRKIFVGTKGIPHLVTHDARTIRY R K I T K G 0 0 0 0 0 0 0 1 0 1 0 2 0 1 0 0 1 0 0 1 0 0 7 1 791.49052 P62701 P62701 128 134 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.02354 67.981 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866200 0 2866200 2866200 0 2866200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17485 2593 18228 90916 92654 92654 1 KIGDTSVSYK TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI R K I Y K Y 0 0 0 1 0 0 0 1 0 1 0 2 0 0 0 2 1 0 1 1 0 0 10 1 1096.5764 P20700 P20700 474 483 LMNB1 Lamin-B1 yes yes 2 0.023214 38.303 By MS/MS By MS/MS 3 3 1.1039 1.1084 20.116 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95134 1.0514 13.318 3 0 Plateau 1.3484 1.2018 12.956 3 0 Median 33386000 17313000 16072000 0 0 0 0 0 0 0 0 0 0 0 0 21312000 11810000 9501600 12074000 5503300 6570600 17486 2084 18229 90917;90918;90919;90920;90921;90922 92655;92656;92657;92658 92657 4 KIGEEEIQKPEEK RRTDIFGVEETAIGKKIGEEEIQKPEEKVT GKKIGEEEIQKPEEKVTWDGHSGSMARTQQ K K I E K V 0 0 0 0 0 1 5 1 0 2 0 3 0 0 1 0 0 0 0 0 0 0 13 2 1555.8094 Q15459 Q15459 487 499 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.00034416 60.157 By matching By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1 0.83247 0.89362 8.0997 6 Median 0.83022 0.87028 NaN 1 0 Median 1.0239 0.97246 NaN 1 0 Median 0.76632 0.9348 NaN 1 0 Median 0.83472 0.85482 NaN 1 0 Median 0.69382 0.77351 NaN 1 0 Median 0.84451 0.91759 NaN 1 0 Median 12203000 5941900 6260800 635880 249240 386640 2879600 1320400 1559200 1857400 1094800 762640 2013100 968000 1045100 4038400 1979600 2058800 778210 329760 448450 17487 2954 18230 90923;90924;90925;90926;90927;90928 92659;92660;92661;92662 92661 4 KIGELVR ESLDNLESMMPNKVRKIGELVRYLNTNPVG SMMPNKVRKIGELVRYLNTNPVGGLLEYAR R K I V R Y 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 1 813.50724 P55265;A0A3B3IRQ9;A0A3B3ISX1 P55265 715 721 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.038112 52.636 By matching By matching By matching By matching By MS/MS By matching 1 3 3 2 3 4 1.283 1.2338 8.2938 16 Median 1.183 1.266 NaN 1 0 Median 1.3628 1.2868 11.552 3 0 Median 1.081 1.2299 8.5534 3 0 Median 1.4501 1.3612 7.6939 2 0 Median 1.0775 1.1853 2.3891 3 0 Median 1.3534 1.1961 6.1793 4 0 Median 39758000 17634000 22124000 1578600 780610 797990 7413500 3071100 4342300 2427700 1042500 1385100 1191500 490030 701460 20399000 9511600 10888000 6747500 2738400 4009100 17488 2498 18231 90929;90930;90931;90932;90933;90934;90935;90936;90937;90938;90939;90940;90941;90942;90943;90944 92663;92664;92665 92665 3 KIGGIFAFK EIEKKLEEEGEQFVKKIGGIFAFKVKDGPG GEQFVKKIGGIFAFKVKDGPGGKEATWVVD K K I F K V 1 0 0 0 0 0 0 2 0 2 0 2 0 2 0 0 0 0 0 0 0 0 9 1 979.58549 P22307;H0YF61 P22307 454 462 SCP2 Non-specific lipid-transfer protein yes no 2 0.0049979 64.567 By MS/MS By MS/MS By MS/MS 1 1 1 1.4309 1.4492 11.862 3 Median 1.2633 1.183 NaN 1 0 Median 1.6717 1.4492 NaN 1 0 Median 1.4309 1.4564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52444000 22555000 29889000 35438000 16104000 19333000 12104000 4327100 7776500 4903100 2123800 2779300 0 0 0 0 0 0 0 0 0 17489 2099 18232 90945;90946;90947 92666;92667;92668;92669 92669 4 KIGLETVGVK YNTVMLAIGRDACTRKIGLETVGVKINEKT DACTRKIGLETVGVKINEKTGKIPVTDEEQ R K I V K I 0 0 0 0 0 0 1 2 0 1 1 2 0 0 0 0 1 0 0 2 0 0 10 1 1042.6386 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PRI8 E9PIR7 299 308 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.00074474 92.051 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1935 1.1208 22.821 5 Median 1.5434 1.476 NaN 1 0 Median 1.0938 1.0261 12.494 2 0 Median 1.207 1.2739 NaN 1 0 Median 0.83655 0.8362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23611000 10973000 12639000 9607700 3851000 5756600 10825000 5439500 5385700 732790 366870 365920 2445400 1315200 1130300 0 0 0 0 0 0 17490 11 18233 90948;90949;90950;90951;90952 92670;92671 92671 2 KIGQQPQQPGAPPQQDYTK TGQSDYTKAWEEYYKKIGQQPQQPGAPPQQ QPQQPGAPPQQDYTKAWEEYYKKQAQVATG K K I T K A 1 0 0 1 0 6 0 2 0 1 0 2 0 0 4 0 1 0 1 0 0 0 19 1 2108.0651 Q92945;A0A087WTP3;M0R0C6;M0QYG1 Q92945 628 646 KHSRP Far upstream element-binding protein 2 yes no 2;3 3.1067E-18 135.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 0.62541 0.57149 16.618 8 Median 0.4018 0.41563 NaN 1 0 Median 0.68578 0.66298 NaN 1 0 Median 0.47205 0.53447 1.9337 2 0 Median 0.67008 0.6546 10.696 3 0 Median NaN NaN NaN 0 0 Median 0.63484 0.57409 NaN 1 0 Median 52967000 32663000 20304000 1982900 1467300 515600 1293200 746700 546530 28565000 17840000 10725000 19962000 11914000 8048100 0 0 0 1163900 695220 468640 17491 3568 18234 90953;90954;90955;90956;90957;90958;90959;90960 92672;92673;92674;92675;92676;92677;92678;92679;92680;92681;92682;92683;92684;92685;92686;92687;92688;92689;92690;92691 92683 20 KIHEEFSEHALLR MVEEFMLLANISVAKKIHEEFSEHALLRKH AKKIHEEFSEHALLRKHPAPPPSNYEILVK K K I L R K 1 1 0 0 0 0 3 0 2 1 2 1 0 1 0 1 0 0 0 0 0 0 13 1 1607.842 Q9Y2L1;G3V1J5 Q9Y2L1 677 689 DIS3 Exosome complex exonuclease RRP44 yes no 4 0.00040647 50.563 By MS/MS By MS/MS 1 1 1.1056 1.155 12.837 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1137 1.2647 NaN 1 1 Median 1.0976 1.0548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7410100 3012100 4397900 0 0 0 0 0 0 4226900 1918600 2308300 3183200 1093600 2089600 0 0 0 0 0 0 17492 4384 18235 90961;90962 92692;92693 92693 2 KIHIDLPNEQAR DTLDPALLRPGRLDRKIHIDLPNEQARLDI LDRKIHIDLPNEQARLDILKIHAGPITKHG R K I A R L 1 1 1 1 0 1 1 0 1 2 1 1 0 0 1 0 0 0 0 0 0 0 12 1 1432.7787 A0A087X2I1;P62333 A0A087X2I1 312 323 PSMC6 26S protease regulatory subunit 10B yes no 2;3 4.467E-05 85.973 By MS/MS By MS/MS By MS/MS 2 1 1 0.93315 0.93548 18.307 4 Median 0.86891 0.93094 3.7917 2 1 Median 0.97548 0.91518 NaN 1 0 Median 1.1719 1.331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23685000 11072000 12614000 16007000 7813000 8194300 3529300 1656200 1873100 4148500 1602400 2546100 0 0 0 0 0 0 0 0 0 17493 138 18236 90963;90964;90965;90966 92694;92695;92696;92697;92698;92699;92700 92695 7 KIHLTENGIR PISEHAVFNVDLMSKKIHLTENGIRVDIGD DLMSKKIHLTENGIRVDIGDTIIYLVH___ K K I I R V 0 1 1 0 0 0 1 1 1 2 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1179.6724 Q9P2J5 Q9P2J5 1155 1164 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 0.00017939 99.815 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4615500 0 4615500 1125300 0 1125300 3490100 0 3490100 0 0 0 0 0 0 0 0 0 0 0 0 17494 4224 18237 90967;90968 92701;92702 92702 2 KIHPQTIIAGWR LAAELLREAESLIAKKIHPQTIIAGWREAT IAKKIHPQTIIAGWREATKAAREALLSSAV K K I W R E 1 1 0 0 0 1 0 1 1 3 0 1 0 0 1 0 1 1 0 0 0 0 12 1 1418.8147 P78371;F5GWF6;F8VQ14 P78371 120 131 CCT2 T-complex protein 1 subunit beta yes no 2;3 8.994E-06 124.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 2 1 2 1.0425 1.0116 30.829 11 Median 1.0265 1.0274 39.059 4 0 Median 1.1208 1.0228 9.1174 2 0 Median 1.2177 1.3669 NaN 1 0 Median 1.089 1.0219 8.9798 2 0 Median NaN NaN NaN 0 0 Median 0.78783 0.71534 2.9431 2 0 Median 172990000 83842000 89147000 127910000 62445000 65464000 19599000 9248000 10351000 12906000 6239200 6666300 6899500 2842500 4057000 0 0 0 5675300 3066900 2608400 17495 2644 18238 90969;90970;90971;90972;90973;90974;90975;90976;90977;90978;90979;90980 92703;92704;92705;92706;92707;92708;92709;92710;92711;92712;92713;92714;92715;92716;92717 92706 15 KIHSQEEALR IITPNQFEAELLSGRKIHSQEEALRVMDML LLSGRKIHSQEEALRVMDMLHSMGPDTVVI R K I L R V 1 1 0 0 0 1 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 10 1 1209.6466 O00764;F2Z2Y4 O00764 161 170 PDXK Pyridoxal kinase yes no 3 0.013469 26.786 By MS/MS By matching By matching 1 1 1 1.1267 1.1091 5.5135 3 Median 1.1267 1.1091 NaN 1 0 Median 1.2167 1.1392 NaN 1 0 Median 0.91857 1.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1085500 542140 543370 676140 328520 347620 334790 169450 165340 74570 44168 30402 0 0 0 0 0 0 0 0 0 17496 1478 18239 90981;90982;90983 92718;92719 92718 2 KIHTEPQLSAALEYVR DTRRLSFLVSYIASKKIHTEPQLSAALEYV IHTEPQLSAALEYVRSHPLDPIDTVDFERE K K I V R S 2 1 0 0 0 1 2 0 1 1 2 1 0 0 1 1 1 0 1 1 0 0 16 1 1853.9999 P47897;A0A1B0GVU9;A0A0U1RQT0;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2 P47897 80 95 QARS Glutamine--tRNA ligase yes no 3 0.00055806 50.608 By MS/MS 1 0.97418 1.0003 NaN 1 Median 0.97418 1.0003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10001000 4520200 5480800 10001000 4520200 5480800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17497 2356 18240 90984 92720 92720 1 KIHVTPLIPGK MRIMDPEIALKILHRKIHVTPLIPGKSQSV ILHRKIHVTPLIPGKSQSVSVSGPGPGPGP R K I G K S 0 0 0 0 0 0 0 1 1 2 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1201.7547 Q9H0L4 Q9H0L4 194 204 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 3 5.6746E-05 73.781 By matching By MS/MS By MS/MS 1 1 2 0.83555 0.78249 25.445 4 Median NaN NaN NaN 0 0 Median 1.2431 1.1747 NaN 1 0 Median 0.57477 0.64134 NaN 1 0 Median 0.83555 0.78249 1.8563 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13819000 8256200 5563200 0 0 0 576130 253770 322370 10248000 6480100 3767800 2995400 1522300 1473000 0 0 0 0 0 0 17498 3927 18241 90985;90986;90987;90988 92721;92722;92723;92724 92721 4 KIIDSVRGELQK NTREWTDGLFTHVLRKIIDSVRGELQKRQW VLRKIIDSVRGELQKRQWIVFDGDVDPEWV R K I Q K R 0 1 0 1 0 1 1 1 0 2 1 2 0 0 0 1 0 0 0 1 0 0 12 2 1384.8038 Q14204;A0A2R8YFZ7 Q14204 2286 2297 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0016434 42.083 By MS/MS By MS/MS 1 1 1.3894 1.6697 56.547 2 Median 1.0286 1.1194 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8767 2.4905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13922000 6110700 7810800 9031200 4339300 4691900 0 0 0 4890300 1771400 3118900 0 0 0 0 0 0 0 0 0 17499 2865 18242 90989;90990 92725;92726;92727 92726 3 KIIENELEGFGIR LILIVLDVLKPLGHKKIIENELEGFGIRLN HKKIIENELEGFGIRLNSKPPNIGFKKKDK K K I I R L 0 1 1 0 0 0 3 2 0 3 1 1 0 1 0 0 0 0 0 0 0 0 13 1 1516.8249 Q9Y295 Q9Y295 159 171 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 3 0.02534 20.381 By MS/MS 1 1.4517 1.6481 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4517 1.6481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1483700 816070 667630 0 0 0 0 0 0 1483700 816070 667630 0 0 0 0 0 0 0 0 0 17500 4382 18243 90991 92728 92728 1 KIIETPGIR LFFAFLQTGNYKEAKKIIETPGIRARSARL NYKEAKKIIETPGIRARSARLQWFCDRCVA K K I I R A 0 1 0 0 0 0 1 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 9 1 1025.6233 P42704 P42704 909 917 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0027867 75.738 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0297 1.0202 17.605 4 Median 0.89789 0.93517 NaN 1 0 Median 1.2832 1.1848 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.158 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91563 0.80269 NaN 1 0 Median 28300000 12629000 15672000 8768700 4419300 4349400 17882000 7410200 10472000 0 0 0 848920 366990 481930 0 0 0 800430 432070 368360 17501 2315 18244 90992;90993;90994;90995 92729;92730;92731;92732 92731 4 KIIKDGEQHEDLNEVAK GIVLWNIFNRMPIARKIIKDGEQHEDLNEV IKDGEQHEDLNEVAKLFNIHED________ R K I A K L 1 0 1 2 0 1 3 1 1 2 1 3 0 0 0 0 0 0 0 1 0 0 17 2 1965.0167 O95831;E9PMA0 O95831 590 606 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3;4 0.034211 14.472 By MS/MS 2 1.1499 1.1735 15.162 2 Median 1.1499 1.1735 15.162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12247000 5691600 6555400 12247000 5691600 6555400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17502 1797 18245 90996;90997 92733;92734;92735 92733 3 KIIQQVLQGLDYLHTK IIKSNYQGLPLPCVKKIIQQVLQGLDYLHT IIQQVLQGLDYLHTKCRIIHTDIKPENILL K K I T K C 0 0 0 1 0 3 0 1 1 2 3 2 0 0 0 0 1 0 1 1 0 0 16 1 1896.0833 H3BLV9;Q96SB4 H3BLV9 207 222 SRPK1 SRSF protein kinase 1 yes no 3 0.00064708 36.638 By MS/MS 1 1.0084 0.97541 NaN 1 Median NaN NaN NaN 0 0 Median 1.0084 0.97541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2438500 1249900 1188600 0 0 0 2438500 1249900 1188600 0 0 0 0 0 0 0 0 0 0 0 0 17503 1207 18246 90998 92736 92736 1 KIITVSVK VGSRRSQPGQRREPRKIITVSVKEDVHLKK GQRREPRKIITVSVKEDVHLKKAENAWKPS R K I V K E 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 1 1 0 0 2 0 0 8 1 886.58515 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 903 910 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.03295 44.349 By matching By MS/MS By matching By matching 1 2 2 1 1.2208 1.1532 5.9333 6 Median 0.98382 1.0106 NaN 1 0 Median 1.196 1.138 0.88566 2 0 Median NaN NaN NaN 0 0 Median 1.2395 1.1673 0.7395 2 0 Median NaN NaN NaN 0 0 Median 1.3358 1.192 NaN 1 0 Median 7992600 3273000 4719500 1488700 680910 807820 4848800 1949700 2899000 0 0 0 781050 345380 435670 0 0 0 873990 296970 577020 17504 300 18247 90999;91000;91001;91002;91003;91004 92737 92737 1 KIIVDTYGGWGAHGGGAFSGK FVIGGPQGDAGLTGRKIIVDTYGGWGAHGG YGGWGAHGGGAFSGKDYTKVDRSAAYAARW R K I G K D 2 0 0 1 0 0 0 7 1 2 0 2 0 1 0 1 1 1 1 1 0 0 21 1 2077.0381 P31153;Q00266 P31153 265 285 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 3;4 5.3572E-15 96.79 By MS/MS By matching 3 1 1.1424 1.0613 15.195 4 Median 1.1046 1.0225 7.7558 3 0 Median NaN NaN NaN 0 0 Median 1.2344 1.3452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40728000 18981000 21746000 36202000 16880000 19321000 0 0 0 4526300 2101200 2425000 0 0 0 0 0 0 0 0 0 17505 2202 18248 91005;91006;91007;91008 92738;92739;92740 92739 3 KILAAIIMK FNTLTNSFQPSLLGRKILAAIIMKKDSEDM PSLLGRKILAAIIMKKDSEDMGVVVSLGTG R K I M K K 2 0 0 0 0 0 0 0 0 3 1 2 1 0 0 0 0 0 0 0 0 0 9 1 999.65146 P55265;A0A3B3IRQ9 P55265 867 875 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.016577 47.082 By MS/MS By matching By MS/MS By matching 1 2 3 2 1.2479 1.2546 11.219 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0731 1.2271 NaN 1 0 Median 1.4912 1.3714 7.5173 2 0 Median 1.1064 1.2381 6.6022 3 0 Plateau 1.5477 1.3886 12.486 2 0 Median 33709000 15366000 18343000 0 0 0 0 0 0 3846500 1733100 2113400 2915700 978150 1937600 23768000 11509000 12259000 3178100 1144900 2033200 17506 2498 18249 91009;91010;91011;91012;91013;91014;91015;91016 92741;92742;92743 92742 3 KILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTR LKIQLQDAGRIAAQRKILAAQGQLSAQGGA EAPAAPRPTATQLTRDLLRSRGIAGLYKGL R K I T R D 8 2 0 0 0 5 1 3 0 1 3 1 0 0 4 2 3 0 0 1 0 0 34 2 3383.8273 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;K4DIA8;K4DIB8;E9PS95 Q9H936 142 175 SLC25A22 Mitochondrial glutamate carrier 1 yes no 4 2.2931E-14 70.268 By MS/MS 1 0.60248 0.63145 NaN 1 Median 0.60248 0.63145 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19554000 14229000 5324800 19554000 14229000 5324800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17507 943 18250 91017 92744 92744 1 KILAQDVAQLK TEEAKRHLNDLLEDRKILAQDVAQLKEKKE LEDRKILAQDVAQLKEKKESGENPPPKLRR R K I L K E 2 0 0 1 0 2 0 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1225.7394 O95239 O95239 772 782 KIF4A Chromosome-associated kinesin KIF4A yes yes 2;3 0.00016231 121.61 By MS/MS By MS/MS By MS/MS 2 4 2 1.2015 1.1787 5.6583 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0737 1.2371 7.7561 2 0 Median 1.2015 1.1541 5.6967 4 0 Median NaN NaN NaN 0 0 Median 1.2911 1.1594 3.2453 2 0 Median 25199000 11538000 13660000 0 0 0 0 0 0 16041000 7526000 8514700 6786100 2966600 3819500 0 0 0 2371900 1045800 1326100 17508 1757 18251 91018;91019;91020;91021;91022;91023;91024;91025 92745;92746;92747;92748;92749;92750;92751 92747 7 KILATPPQEDAPSVDIANIR EQIIQEIYSQIQSKKKILATPPQEDAPSVD PPQEDAPSVDIANIRMPSLPSYKVGDKIAT K K I I R M 3 1 1 2 0 1 1 0 0 3 1 1 0 0 3 1 1 0 0 1 0 0 20 1 2147.1586 P29401;A0A0B4J1R6;E9PFF2 P29401 283 302 TKT Transketolase yes no 3 3.6155E-08 61.276 By MS/MS By matching 1 1 0.44938 0.42889 40.828 2 Median 0.57075 0.57243 NaN 1 0 Median 0.35382 0.32134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12962000 8009300 4952600 12071000 7385800 4685100 890960 623510 267450 0 0 0 0 0 0 0 0 0 0 0 0 17509 2173 18252 91026;91027 92752;92753 92753 2 KILDPNTGEPAPVLSSPPPADVSTFLAFPSPEK PQQRGQGEKSATPSRKILDPNTGEPAPVLS PADVSTFLAFPSPEKLLRLGPKSSVLIAQQ R K I E K L 3 0 1 2 0 0 2 1 0 1 3 2 0 2 8 4 2 0 0 2 0 0 33 1 3417.7708 P46060 P46060 413 445 RANGAP1 Ran GTPase-activating protein 1 yes yes 3 0.041445 8.9128 By MS/MS 2 0.2088 0.22941 7.5449 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2088 0.22941 7.5449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3194600 2595500 599110 0 0 0 0 0 0 3194600 2595500 599110 0 0 0 0 0 0 0 0 0 17510 2336 18253 91028;91029 92754 92754 1 KILDSVGIEADDDRLNK AALGGNSSPSAKDIKKILDSVGIEADDDRL LDSVGIEADDDRLNKVISELNGKNIEDVIA K K I N K V 1 1 1 4 0 0 1 1 0 2 2 2 0 0 0 1 0 0 0 1 0 0 17 2 1899.9902 P05387 P05387 25 41 RPLP2 60S acidic ribosomal protein P2 yes yes 3 3.8488E-06 80.738 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1.0295 1.0125 19.094 6 Median 0.98405 1.0661 NaN 1 0 Median 1.6208 1.469 NaN 1 0 Median 0.90729 1.0239 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8513 0.9807 NaN 1 0 Median 1.1503 0.9053 14.241 2 0 Median 25464000 12658000 12806000 2386300 1082500 1303800 2846200 1095000 1751200 15756000 8151200 7604600 0 0 0 3048000 1681400 1366700 1428000 648260 779780 17511 1864 18254 91030;91031;91032;91033;91034;91035 92755;92756;92757 92756 3 KILEVHIDK DRCKSCNGRKIVREKKILEVHIDKGMKDGQ KIVREKKILEVHIDKGMKDGQKITFHGEGD K K I D K G 0 0 0 1 0 0 1 0 1 2 1 2 0 0 0 0 0 0 0 1 0 0 9 1 1093.6495 P31689 P31689 206 214 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.037436 37.344 By matching By MS/MS By matching By matching 1 2 1 1 0.95375 0.89901 23.854 5 Median 1.1024 1.0635 NaN 1 0 Median 0.88143 0.8172 13.493 2 0 Median 1.3141 1.3869 NaN 1 0 Median 0.90593 0.86047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9488400 4587400 4900900 2322700 1018600 1304100 1418700 736530 682160 1818200 768620 1049600 3928700 2063600 1865000 0 0 0 0 0 0 17512 2204 18255 91036;91037;91038;91039;91040 92758 92758 1 KILGVGGEDDDGEVHR KKHSQTDLVSRLKTRKILGVGGEDDDGEVH ILGVGGEDDDGEVHRSKISQVLGNEIKFTI R K I H R S 0 1 0 3 0 0 2 4 1 1 1 1 0 0 0 0 0 0 0 2 0 0 16 1 1694.8224 E9PN66;E9PKN9;E9PS55;E9PMW4;E9PQ46;E9PIN5;E9PIK4;U3KQ32;E9PKZ4;E9PPM1;O14683;E9PNB3;E9PMY0 E9PN66 26 41 TP53I11 Tumor protein p53-inducible protein 11 yes no 3;4 2.5987E-05 69.485 By MS/MS By MS/MS 1 2 1.2615 1.1725 25.582 3 Median 0.89225 0.91587 NaN 1 0 Median 1.4332 1.3383 18.703 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14403000 6358100 8045000 3418500 1699700 1718800 10985000 4658400 6326200 0 0 0 0 0 0 0 0 0 0 0 0 17513 940 18256 91041;91042;91043 92759;92760;92761;92762;92763 92761 4 KILGYINTGK SKTEQGPQVDETQFKKILGYINTGKQEGAK ETQFKKILGYINTGKQEGAKLLCGGGIAAD K K I G K Q 0 0 1 0 0 0 0 2 0 2 1 2 0 0 0 0 1 0 1 0 0 0 10 1 1105.6495 P05091;S4R3S4 P05091 369 378 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.0324 36.334 By MS/MS By matching By matching By matching 1 1 1 2 0.90457 0.93613 7.6599 5 Median 0.90457 0.87054 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89254 0.94806 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84427 0.92868 NaN 1 0 Median 1.1232 1.0028 9.7311 2 0 Median 27488000 13451000 14037000 3442100 1577100 1865000 0 0 0 9754000 4994900 4759100 0 0 0 11525000 5652100 5872700 2767200 1227200 1540000 17514 1860 18257 91044;91045;91046;91047;91048 92764 92764 1 KILIEDWK LQQMAEVTREGFRLKKILIEDWKKAREEKQ REGFRLKKILIEDWKKAREEKQKKLIELQA K K I W K K 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 0 0 1 0 0 0 0 8 1 1043.6015 K7ELL7;P14314;K7EPW7 K7ELL7 142 149 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0099308 68.95 By MS/MS By matching 1 1 1.154 1.082 15.277 2 Median 1.0338 0.97122 NaN 1 0 Median 1.2882 1.2054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14898000 7410700 7487700 10104000 5330000 4773700 4794700 2080700 2714000 0 0 0 0 0 0 0 0 0 0 0 0 17515 1378 18258 91049;91050 92765 92765 1 KILIWSGR TYNRVPLHKPTDWQKKILIWSGRFKKEDEI KPTDWQKKILIWSGRFKKEDEIPETVSLEM K K I G R F 0 1 0 0 0 0 0 1 0 2 1 1 0 0 0 1 0 1 0 0 0 0 8 1 971.59164 Q96A26;F8W7Q4;E9PH05 Q96A26 69 76 FAM162A Protein FAM162A yes no 2 0.0051056 86.833 By MS/MS By MS/MS By MS/MS 2 2 1 1.26 1.2503 13.389 5 Median 1.2184 1.1975 5.063 2 0 Median 1.7351 1.5313 5.9921 2 0 Median 1.2026 1.2503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61379000 24410000 36969000 18218000 7719800 10498000 36797000 13778000 23019000 6363700 2912100 3451700 0 0 0 0 0 0 0 0 0 17516 1085 18259 91051;91052;91053;91054;91055 92766;92767;92768;92769;92770;92771 92770 6 KILMGNEELTR KRTAPEDFLGKGPTKKILMGNEELTRLWNL GPTKKILMGNEELTRLWNLCPDNMEACKSE K K I T R L 0 1 1 0 0 0 2 1 0 1 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1302.6966 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 430 440 THOC1 THO complex subunit 1 yes no 3 0.0024071 38.634 By MS/MS 1 0.53345 0.56634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53345 0.56634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3390100 2066100 1324000 0 0 0 0 0 0 3390100 2066100 1324000 0 0 0 0 0 0 0 0 0 17517 62 18260 91056 92772 92772 1 KILNDLSSDAPGVPR SQKRREILSRRPSYRKILNDLSSDAPGVPR KILNDLSSDAPGVPRIEEEKSEEETSAPAI R K I P R I 1 1 1 2 0 0 0 1 0 1 2 1 0 0 2 2 0 0 0 1 0 0 15 1 1580.8522 P16220;C9J4L5;C9JBT4;H7C3I0;E7EWP8;C9J896 P16220 136 150 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 3 8.5371E-05 58.071 By matching By MS/MS By MS/MS 2 1 1 0.44049 0.47285 102.33 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15995 0.1677 79.908 2 0 Median 0.99287 0.87284 NaN 1 0 Median 0.69891 0.75775 NaN 1 0 Median NaN NaN NaN 0 0 Median 17446000 13617000 3828600 0 0 0 0 0 0 11676000 10316000 1359200 928860 448320 480530 4841300 2852400 1988800 0 0 0 17518 2027 18261 91057;91058;91059;91060 92773;92774 92773 2 KILQDGGLQVVEK LRKVLISDSLDPCCRKILQDGGLQVVEKQN CRKILQDGGLQVVEKQNLSKEELIAELQDC R K I E K Q 0 0 0 1 0 2 1 2 0 1 2 2 0 0 0 0 0 0 0 2 0 0 13 1 1425.8191 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2;A0A286YF34;A0A286YFF3;A0A286YFK5 A0A286YF22 21 33 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2;3 1.1204E-06 102.66 By MS/MS By matching By matching 3 1 1 1.243 1.1881 25.201 5 Median 1.0871 1.0391 12.96 3 2 Median 1.5382 1.4467 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.719 1.7183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32976000 17235000 15741000 30129000 16038000 14091000 2457200 1037700 1419500 0 0 0 389980 159100 230880 0 0 0 0 0 0 17519 351 18262 91061;91062;91063;91064;91065 92775;92776;92777;92778 92776 4 KILQLVATGAVR EYGRLNLHYAVVSKRKILQLVATGAVRDWD SKRKILQLVATGAVRDWDDPRLFTLTALRR R K I V R D 2 1 0 0 0 1 0 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 12 1 1267.7976 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQQ5;A0A1B0GTT3 P47897 498 509 QARS Glutamine--tRNA ligase yes no 2;3 0.0032342 35.677 By MS/MS By matching 2 2 1.1727 1.1778 21.488 4 Median 1.2856 1.3158 34.857 2 0 Median 1.1727 1.1778 6.8795 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7353300 3359400 3993900 6002100 2685600 3316500 1351200 673790 677440 0 0 0 0 0 0 0 0 0 0 0 0 17520 2356 18263 91066;91067;91068;91069 92779;92780;92781 92779 3 KILTPIIFKEENLR ERDRMIQVYFPKEGRKILTPIIFKEENLRT RKILTPIIFKEENLRTMYSQDRHVDVLNLC R K I L R T 0 1 1 0 0 0 2 0 0 3 2 2 0 1 1 0 1 0 0 0 0 0 14 2 1713.0189 G5E9W7;G5E9V5;P82650;H7C5L9 G5E9W7 162 175 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3 0.0014636 38.028 By MS/MS By matching 1 1 0.8135 0.89078 7.7745 2 Median 0.88889 0.94112 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7445 0.84313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6413100 3429500 2983600 4933100 2672900 2260200 0 0 0 1480100 756630 723450 0 0 0 0 0 0 0 0 0 17521 1130 18264 91070;91071 92782;92783 92782 2 KILTTEGR AFGVYPNVCYHKEKRKILTTEGRNALIHKS CYHKEKRKILTTEGRNALIHKSSVNCPFSS R K I G R N 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 2 0 0 0 0 0 8 1 916.53418 Q08211 Q08211 1011 1018 DHX9 ATP-dependent RNA helicase A yes yes 2 0.043154 38.962 By MS/MS 1 1.4234 1.3575 NaN 1 Median NaN NaN NaN 0 0 Median 1.4234 1.3575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1223900 475030 748900 0 0 0 1223900 475030 748900 0 0 0 0 0 0 0 0 0 0 0 0 17522 2736 18265 91072 92784 92784 1 KIMSSPLSK KNRKRHFNAPSHIRRKIMSSPLSKELRQKY PSHIRRKIMSSPLSKELRQKYNVRSMPIRK R K I S K E 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 3 0 0 0 0 0 0 9 1 989.55795 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KSS0;E5RHH1 P61254 28 36 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.00123 93.598 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 2 1 0.93243 0.93589 6.5397 8 Median 0.94152 0.94989 0.41608 2 0 Median 1.0189 0.90108 NaN 1 0 Median 0.92729 0.92481 NaN 1 0 Median 0.89408 0.80412 NaN 1 0 Median 0.884 0.97675 1.8867 2 0 Median 1.0162 0.88199 NaN 1 0 Median 38714000 19447000 19266000 19978000 10148000 9829800 6679900 3112100 3567800 6750400 3522700 3227700 872010 443910 428100 3760600 1886900 1873800 672960 333880 339080 17523 2554 18266 91073;91074;91075;91076;91077;91078;91079;91080 92785;92786;92787;92788;92789;92790;92791 92785 7 KINDYVEK EAFSINFRDAEEAKKKINDYVEKGSHGKIV DAEEAKKKINDYVEKGSHGKIVELVKVLDP K K I E K G 0 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 1 0 0 8 1 1007.5288 CON__P34955 CON__P34955 178 185 yes yes 2 0.017716 66.692 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2187700 2187700 0 0 0 0 2187700 2187700 0 0 0 0 0 0 0 0 0 0 0 0 0 + 17524 763 18267 91081 92792 92792 1 KINELMPK GETCKGCAEKSDYIRKINELMPKYAPKAAS EKSDYIRKINELMPKYAPKAASARTDL___ R K I P K Y 0 0 1 0 0 0 1 0 0 1 1 2 1 0 1 0 0 0 0 0 0 0 8 1 971.54739 P55145;A8K878 P55145 163 170 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2 0.011807 63.419 By matching By MS/MS By MS/MS 1 2 2 0.96798 0.98392 6.876 5 Median 0.91032 0.91483 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95493 0.96115 3.311 2 0 Median 1.2056 1.048 5.8855 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24195000 11121000 13074000 2922100 1378100 1544000 0 0 0 14660000 6826900 7833200 6612400 2915700 3696700 0 0 0 0 0 0 17525 538 18268 91082;91083;91084;91085;91086 92793;92794 92794 2 KINELTGIK RQIKQVEDDIQQLLKKINELTGIKESDTGL IQQLLKKINELTGIKESDTGLAPPALWDLA K K I I K E 0 0 1 0 0 0 1 1 0 2 1 2 0 0 0 0 1 0 0 0 0 0 9 1 1014.6073 P35998;C9JLS9 P35998 58 66 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0062067 60.91 By MS/MS By MS/MS By matching 1 1 1 1.0555 1.0025 4.6678 3 Median 1.0403 1.0007 NaN 1 0 Median 1.1586 1.0859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0555 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13296000 6233400 7063000 3714900 1749400 1965500 8169900 3760300 4409700 0 0 0 1411600 723760 687830 0 0 0 0 0 0 17526 2253 18269 91087;91088;91089 92795;92796;92797 92797 3 KINFDALLK ______________________________ MNIFDRKINFDALLKFSHITPSTQQHLKKV R K I L K F 1 0 1 1 0 0 0 0 0 1 2 2 0 1 0 0 0 0 0 0 0 0 9 1 1060.6281 F8VQW0;F8VX73;F8VPI1;F8W201;F8W086;F8VR05;F8VQQ5;F8VSI7;F8VVJ4;P55061;F8W1G3 F8VQW0 7 15 TMBIM6 Bax inhibitor 1 yes no 2 0.0006373 93.598 By MS/MS By MS/MS By matching 3 3 1 1.1424 1.1652 30.231 6 Median 1.2663 1.3094 12.856 2 1 Median 1.1891 1.1356 15.523 3 0 Plateau 1.746 1.9849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31410000 13436000 17974000 14973000 6233900 8738800 14031000 6355300 7675700 2406400 846820 1559600 0 0 0 0 0 0 0 0 0 17527 1058 18270 91090;91091;91092;91093;91094;91095;91096 92798;92799;92800;92801 92798 4 KINFLMR SYERCRRIYNMEMARKINFLMRKNRADPWQ IYNMEMARKINFLMRKNRADPWQGC_____ R K I M R K 0 1 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 7 1 920.52659 P82921 P82921 71 77 MRPS21 28S ribosomal protein S21, mitochondrial yes yes 2 0.0097255 91.584 By MS/MS By MS/MS 1 1 0.9616 0.94293 NaN 1 Median 0.9616 0.94293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21205000 11261000 9943600 21205000 11261000 9943600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17528 2657 18271;18272 91097;91098 92802;92803;92804 92803 1342 3 KINLELR ______________________________ ______________________________ K K I L R N 0 1 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 1 884.54435 E9PPH5;Q9BTT0;E9PI45;Q5TB25;Q5TB19;E9PLC4 E9PPH5 6 12 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E yes no 2 0.023216 68.915 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0624 1.0821 6.9947 5 Median 1.0007 1.005 NaN 1 0 Median 1.1435 1.0502 6.9159 2 0 Median 0.98419 1.0821 NaN 1 0 Median 1.2534 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21481000 10137000 11344000 11576000 5788500 5787800 6798500 3063100 3735400 1608600 754690 853950 1497900 530650 967210 0 0 0 0 0 0 17529 978 18273 91099;91100;91101;91102;91103 92805;92806;92807;92808 92806 4 KINQLPEAER KSNNKENITIVDISRKINQLPEAERNLLEN VDISRKINQLPEAERNLLENGSVYVGLNAA R K I E R N 1 1 1 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 10 1 1196.6513 Q9H061;E9PI90 Q9H061 20 29 TMEM126A Transmembrane protein 126A yes no 2;3 0.01157 46.891 By MS/MS By MS/MS By matching 2 2 1 1.2596 1.1112 40.609 5 Median 1.171 1.1622 49.447 2 0 Median 1.6729 1.4758 40.129 2 1 Median 0.71209 0.79728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396800 2226500 3170300 2503300 1120000 1383300 2367700 811950 1555700 525720 294550 231170 0 0 0 0 0 0 0 0 0 17530 3918 18274 91104;91105;91106;91107;91108 92809;92810;92811;92812 92810 4 KINQLSEENGDLSFK KQCQDLKTEKSQMDRKINQLSEENGDLSFK KINQLSEENGDLSFKLREFASHLQQLQDAL R K I F K L 0 0 2 1 0 1 2 1 0 1 2 2 0 1 0 2 0 0 0 0 0 0 15 1 1720.8632 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 312 326 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 2.9793E-209 335.74 By MS/MS By MS/MS By MS/MS 2 2 2 0.88771 0.96089 9.8875 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7905 0.9184 13.251 2 0 Median 1.1042 1.0369 12.734 2 0 Median 0.88771 0.96089 0.71977 2 0 Median NaN NaN NaN 0 0 Median 124150000 67493000 56652000 0 0 0 0 0 0 85040000 46307000 38733000 7384700 3416600 3968100 31721000 17770000 13952000 0 0 0 17531 2905;77 18275 91109;91110;91111;91112;91113;91114 92813;92814;92815;92816;92817;92818;92819;92820 92815 8 KINSSPNVNTTASGVEDLNIIQVTIPDDDNER ETAIKESTSSKSPPRKINSSPNVNTTASGV LNIIQVTIPDDDNERLSKVEKARQLREQVN R K I E R L 1 1 5 4 0 1 2 1 0 4 1 1 0 0 2 3 3 0 0 3 0 0 32 1 3467.7016 P78347;A0A494C1K3 P78347 827 858 GTF2I General transcription factor II-I yes no 3 2.0858E-09 41.209 By MS/MS 1 0.41903 0.47478 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41903 0.47478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7761000 4985000 2776100 0 0 0 0 0 0 7761000 4985000 2776100 0 0 0 0 0 0 0 0 0 17532 2642 18276 91115 92821 92821 1 KIPDPDSDDVSEVDAR PQAAQPPTLPVEEKKKIPDPDSDDVSEVDA IPDPDSDDVSEVDARHIIENAKQDVDDEYG K K I A R H 1 1 0 5 0 0 1 0 0 1 0 1 0 0 2 2 0 0 0 2 0 0 16 1 1756.8115 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y7R0;A0A2R8Y583 P51532 689 704 SMARCA4 Transcription activator BRG1 yes no 3 0.01699 19.871 By MS/MS By MS/MS 1 1 0.70314 0.75639 21.437 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54226 0.65 NaN 1 0 Median 0.91176 0.8802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13491000 7342200 6148400 0 0 0 0 0 0 11281000 6191600 5089900 2209100 1150600 1058500 0 0 0 0 0 0 17533 366 18277 91116;91117 92822;92823 92823 1 KIPDTVLEK GELFSKFYGELALKKKIPDTVLEKVYELLG ELALKKKIPDTVLEKVYELLGLLGEVHPSE K K I E K V 0 0 0 1 0 0 1 0 0 1 1 2 0 0 1 0 1 0 0 1 0 0 9 1 1041.607 P78527 P78527 165 173 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0032838 72.879 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 3 1.0806 1.0138 17.745 10 Median 0.75598 0.82112 NaN 1 0 Median 1.1759 1.1334 6.0667 2 0 Median 0.73628 0.83392 NaN 1 0 Median 1.1918 1.1621 4.5895 2 0 Median 0.72896 0.77666 NaN 1 0 Median 1.045 0.9466 18.018 3 0 Median 60206000 29651000 30555000 4372300 2401500 1970900 20462000 8980800 11481000 17859000 9961400 7897300 9723500 4460800 5262700 2815000 1625000 1190000 4975300 2221800 2753500 17534 2647 18278 91118;91119;91120;91121;91122;91123;91124;91125;91126;91127 92824;92825;92826;92827;92828;92829;92830;92831 92825 8 KIPGIYVLSLEIGK CNPLSMGAIKKMVEKKIPGIYVLSLEIGKT KKIPGIYVLSLEIGKTLMEDVENSFFLNVN K K I G K T 0 0 0 0 0 0 1 2 0 3 2 2 0 0 1 1 0 0 1 1 0 0 14 1 1528.9229 A0A2C9F2P4;A0A286YFF7;P50897;E9PK48;E9PIA8;Q5T0S4;A0A286YFE3;A0A286YFL8 A0A2C9F2P4 60 73 PPT1 Palmitoyl-protein thioesterase 1 yes no 2 0.0012087 58.172 By MS/MS 1 1.2969 1.1683 NaN 1 Median NaN NaN NaN 0 0 Median 1.2969 1.1683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795400 1615500 2179900 0 0 0 3795400 1615500 2179900 0 0 0 0 0 0 0 0 0 0 0 0 17535 352 18279 91128 92832 92832 1 KIPGVPIMYISNHR YIVATVDRDLKRRIRKIPGVPIMYISNHRY RKIPGVPIMYISNHRYNIERMPDDYGAPRF R K I H R Y 0 1 1 0 0 0 0 1 1 3 0 1 1 0 2 1 0 0 1 1 0 0 14 1 1623.8919 G3V5S9;G3V1S4;Q9Y324 G3V5S9 155 168 FCF1 rRNA-processing protein FCF1 homolog yes no 3 0.00022386 54.898 By MS/MS By matching 1 1 0.84726 0.82075 23.151 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91134 0.96673 NaN 1 0 Median 0.78768 0.69681 NaN 1 0 Median 23667000 11927000 11740000 0 0 0 0 0 0 0 0 0 0 0 0 19370000 9500700 9869600 4296700 2426700 1870000 17536 1104 18280 91129;91130 92833;92834 92834 2 KIPLVPENLLK ISSCTTRKMAEQEQRKIPLVPENLLKKRKA QEQRKIPLVPENLLKKRKAYQALKATQAKQ R K I L K K 0 0 1 0 0 0 1 0 0 1 3 2 0 0 2 0 0 0 0 1 0 0 11 1 1262.7962 Q6DKI1;R4GMU7 Q6DKI1 17 27 RPL7L1 60S ribosomal protein L7-like 1 yes no 2 0.0010732 63.216 By matching By matching By matching By MS/MS By matching 1 1 1 2 2 0.77374 0.77231 6.2706 7 Median 0.77374 0.75173 NaN 1 0 Median 0.94933 0.87163 NaN 1 0 Median 0.71008 0.72063 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71319 0.75781 2.6801 2 0 Median 0.9299 0.7992 0.92901 2 0 Median 34303000 19538000 14765000 2234700 1291200 943570 619530 352160 267370 1560900 1035100 525780 0 0 0 24614000 14093000 10521000 5274600 2766900 2507700 17537 3132 18281 91131;91132;91133;91134;91135;91136;91137 92835;92836 92836 2 KIPNPDFFEDLEPFR PMIDNPSYQGIWKPRKIPNPDFFEDLEPFR KIPNPDFFEDLEPFRMTPFSAIGLELWSMT R K I F R M 0 1 1 2 0 0 2 0 0 1 1 1 0 3 3 0 0 0 0 0 0 0 15 1 1862.9203 P27824 P27824 401 415 CANX Calnexin yes yes 2;3 0.00035716 66.289 By MS/MS By MS/MS 4 3 0.82105 0.84234 24.839 7 Median 1.262 1.2518 29.212 4 0 Linear 0.85807 0.85463 23.536 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43145000 20887000 22259000 22306000 9859900 12446000 20840000 11027000 9812900 0 0 0 0 0 0 0 0 0 0 0 0 17538 2158 18282 91138;91139;91140;91141;91142;91143;91144 92837;92838;92839;92840;92841;92842;92843;92844;92845 92843 9 KIPQELNNITK FLRKNQYTNTKLEVKKIPQELNNITKLNEH LEVKKIPQELNNITKLNEHFSKFGTIVNIQ K K I T K L 0 0 2 0 0 1 1 0 0 2 1 2 0 0 1 0 1 0 0 0 0 0 11 1 1296.7402 Q9P2N5;U3KPZ7 Q9P2N5 606 616 RBM27 RNA-binding protein 27 yes no 2 0.006041 62.463 By MS/MS 1 0.5294 0.60671 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5294 0.60671 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4324900 2890300 1434600 0 0 0 0 0 0 4324900 2890300 1434600 0 0 0 0 0 0 0 0 0 17539 4227 18283 91145 92846 92846 1 KIPSVEDSLGEGSR FSPEEAQQQDEEFEKKIPSVEDSLGEGSRD KKIPSVEDSLGEGSRDAGRPGERGSGGLFS K K I S R D 0 1 0 1 0 0 2 2 0 1 1 1 0 0 1 3 0 0 0 1 0 0 14 1 1472.7471 Q9C0C2 Q9C0C2 1001 1014 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 3 0.034043 15.635 By MS/MS By MS/MS 1 1 1.1446 1.1166 84.626 2 Median 0.61091 0.61381 NaN 1 0 Median 2.1447 2.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15210000 6218500 8991000 11123000 4999200 6124300 4086000 1219300 2866700 0 0 0 0 0 0 0 0 0 0 0 0 17540 3903 18284 91146;91147 92847;92848 92847 2 KIPVLVQSK TLKLLQRLLKSPGCRKIPVLVQSKDDVIVT KSPGCRKIPVLVQSKDDVIVTASNFSSERM R K I S K D 0 0 0 0 0 1 0 0 0 1 1 2 0 0 1 1 0 0 0 2 0 0 9 1 1010.6488 O00178 O00178 336 344 GTPBP1 GTP-binding protein 1 yes yes 2 0.053155 34.387 By matching By MS/MS By matching 1 1 1 1.223 1.3993 27.654 3 Plateau 0.78582 0.81705 NaN 1 0 Median 1.236 1.1947 NaN 1 0 Median 1.223 1.3993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3385200 1487900 1897400 590060 322540 267520 1119400 459660 659750 1675800 705650 970120 0 0 0 0 0 0 0 0 0 17541 1446 18285 91148;91149;91150 92849 92849 1 KIPVVFR GQLLPDNFIAACTEKKIPVVFRLQEGYDHS FIAACTEKKIPVVFRLQEGYDHSYYFIATF K K I F R L 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 2 0 0 7 1 857.54871 P10768;X6RA14;H7BZT7;U3KQT1 P10768 247 253 ESD S-formylglutathione hydrolase yes no 2 0.018074 77.748 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.047 1.0711 12.836 5 Median 1.047 1.0711 NaN 1 0 Median 1.1904 1.073 0.54431 2 0 Median 1.023 1.1129 NaN 1 0 Median 0.86276 0.8142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 204640000 97848000 106790000 116300000 57802000 58493000 75433000 34032000 41402000 5356600 2669400 2687200 7552800 3344500 4208300 0 0 0 0 0 0 17542 1946 18286 91151;91152;91153;91154;91155 92850;92851;92852;92853 92851 4 KIQALQQQADEAEDR ______________________________ KIQALQQQADEAEDRAQGLQRELDGERERR R K I D R A 3 1 0 2 0 4 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 15 1 1741.8595 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UJB9;A0A590UK79 P67936 13 27 TPM4 Tropomyosin alpha-4 chain yes no 2;3 2.3309E-14 151.54 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 0.9627 0.90295 16.705 9 Median 0.95097 0.95373 11.346 2 0 Median 0.97012 0.89055 19.021 4 1 Median 0.86699 0.91701 10.941 2 0 Median 1.1755 1.1093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51338000 25947000 25390000 20673000 10034000 10639000 18784000 9906300 8877700 9283700 4752800 4530900 2596900 1253600 1343300 0 0 0 0 0 0 17543 2629 18287 91156;91157;91158;91159;91160;91161;91162;91163;91164 92854;92855;92856;92857;92858;92859;92860;92861;92862;92863;92864 92862 11 KIQASTMAFK ELINALYPEGQAPVKKIQASTMAFKQMEQI QAPVKKIQASTMAFKQMEQISQFLQAAERY K K I F K Q 2 0 0 0 0 1 0 0 0 1 0 2 1 1 0 1 1 0 0 0 0 0 10 1 1123.606 P37802;X6RJP6 P37802 79 88 TAGLN2 Transgelin-2 yes no 2 0.00054952 107.79 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.1305 1.2306 9.8527 8 Linear 1.0774 1.2199 11.806 3 0 Plateau 1.2144 1.074 10.395 3 0 Plateau 1.1436 1.1385 NaN 1 0 Median 1.1176 1.0058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63111000 29559000 33552000 34101000 15728000 18374000 14041000 6768300 7272800 13186000 6186400 6999600 1782600 876280 906350 0 0 0 0 0 0 17544 2269 18288 91165;91166;91167;91168;91169;91170;91171;91172 92865;92866;92867;92868;92869;92870;92871;92872;92873;92874;92875;92876 92872 12 KIQEESLR DLFPEADKVRTMLVRKIQEESLRTYLFTYS VRTMLVRKIQEESLRTYLFTYSSVYDSISM R K I L R T 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 1 1001.5506 Q99613;B5ME19 Q99613 782 789 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.011786 63.48 By matching By MS/MS By matching 2 1 1 1.1144 1.1066 4.2889 4 Median 1.1144 1.1411 0.57172 2 0 Median 1.1522 1.0776 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0901 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7326200 3371200 3955000 956390 427750 528640 6194900 2862800 3332100 0 0 0 174940 80656 94282 0 0 0 0 0 0 17545 3757 18289 91173;91174;91175;91176 92877;92878 92877 2 KIQEILTQVK VKITGHFYACQVAQRKIQEILTQVKQHQQQ QVAQRKIQEILTQVKQHQQQKALQSGPPQS R K I V K Q 0 0 0 0 0 2 1 0 0 2 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1198.7285 O00425 O00425 552 561 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 0.00079529 113.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 4 1.334 1.2026 28.21 11 Median 0.89298 0.84224 11.33 2 0 Median 1.3523 1.2704 10.277 2 0 Median NaN NaN NaN 0 0 Median 1.2392 1.1442 NaN 1 0 Median 1.4334 1.567 4.146 2 0 Median 1.418 1.2543 31.954 4 0 Median 55083000 25719000 29364000 23312000 12095000 11217000 10118000 4324300 5793400 0 0 0 1775400 720110 1055300 11736000 4998800 6736800 8142200 3580600 4561700 17546 1462 18290 91177;91178;91179;91180;91181;91182;91183;91184;91185;91186;91187 92879;92880;92881;92882;92883;92884;92885;92886;92887 92879 9 KIQELFHVEPGLQR VDSLSRLTKVEELRRKIQELFHVEPGLQRL RKIQELFHVEPGLQRLFYRGKQMEDGHTLF R K I Q R L 0 1 0 0 0 2 2 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 14 1 1692.9311 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 44 57 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 1.1556E-06 94.551 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 4 0.68147 0.71407 17.486 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67179 0.74439 7.4837 4 0 Median 0.76278 0.69408 19.623 2 0 Median 0.70083 0.7488 8.2918 4 0 Median 0.63704 0.56527 23.453 4 0 Median 166590000 99707000 66885000 0 0 0 0 0 0 80940000 49893000 31046000 5398100 2713000 2685100 54580000 31604000 22976000 25674000 15496000 10177000 17547 20 18291 91188;91189;91190;91191;91192;91193;91194;91195;91196;91197;91198;91199;91200;91201 92888;92889;92890;92891;92892;92893;92894;92895;92896;92897;92898;92899;92900;92901 92901 14 KIQGIEEYKK LLLGEDGAGKTSLIRKIQGIEEYKKGRGLE TSLIRKIQGIEEYKKGRGLEYLYLNVHDED R K I K K G 0 0 0 0 0 1 2 1 0 2 0 3 0 0 0 0 0 0 1 0 0 0 10 2 1234.6921 Q9Y6G9;C9JGM7;C9JLW1 Q9Y6G9 86 95 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 3 0.017045 27.428 By MS/MS By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1.0816 1.1265 17.388 9 Median 1.1074 1.1033 0.044896 2 0 Median 1.2273 1.1701 28.749 2 0 Median 1.1002 1.2953 11.242 2 0 Median 1.0553 0.92608 NaN 1 0 Median 1.0342 1.1265 NaN 1 0 Median 1.5366 1.5051 NaN 1 0 Median 7437000 3301600 4135400 1901200 889280 1011900 3168200 1389700 1778500 941140 476820 464320 305210 143130 162090 588760 226760 362000 532570 175980 356590 17548 4491 18292 91202;91203;91204;91205;91206;91207;91208;91209;91210 92902;92903 92903 2 KIQLLEAK KPIVPQKEPSPLLEKKIQLLEAKFAELEGG PSPLLEKKIQLLEAKFAELEGGDDDIEEMG K K I A K F 1 0 0 0 0 1 1 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 8 1 941.59097 Q86U86;E7EVG2 Q86U86 1308 1315 PBRM1 Protein polybromo-1 yes no 2 0.010535 67.169 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2031 1.1464 9.1761 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94596 1.0939 NaN 1 0 Median 1.2815 1.2015 NaN 1 0 Median 1.2377 1.297 NaN 1 0 Median 1.1694 1.06 NaN 1 0 Median 12532000 6074000 6458100 0 0 0 0 0 0 8507900 4426800 4081100 2027200 763990 1263200 1415900 629320 786560 581020 253860 327160 17549 3273 18293 91211;91212;91213;91214 92904;92905;92906 92904 3 KIQLVMK MEHEERPKALNDLGKKIQLVMKVIEAYRNK KALNDLGKKIQLVMKVIEAYRNKDERYDHL K K I M K V 0 0 0 0 0 1 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 7 1 858.53609 O95757;E9PDE8 O95757 708 714 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.043782 49.59 By matching By MS/MS 1 1 1.1129 1.126 36.46 2 Median 0.82168 0.87011 NaN 1 0 Median 1.5072 1.4571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2776900 1314100 1462800 1444200 753590 690570 1332800 560520 772240 0 0 0 0 0 0 0 0 0 0 0 0 17550 1790 18294 91215;91216 92907 92907 1 KIQMSNLMNQAR MEYYEKKEKQIEQQKKIQMSNLMNQARLKV QQKKIQMSNLMNQARLKVLRARDDLITDLL K K I A R L 1 1 2 0 0 2 0 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 12 1 1432.7279 P36543;C9J8H1 P36543 69 80 ATP6V1E1 V-type proton ATPase subunit E 1 yes no 2;3 3.2112E-11 129.85 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.0471 0.9887 61.173 6 Median 1.0752 1.0856 6.8956 2 0 Median 0.59859 0.55816 113.36 2 0 Median NaN NaN NaN 0 0 Median 1.068 0.94545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62408 0.56417 NaN 1 0 Median 53803000 24982000 28821000 47353000 21998000 25355000 5226800 2363300 2863500 0 0 0 378040 209440 168600 0 0 0 844430 410650 433790 17551 2258 18295 91217;91218;91219;91220;91221;91222;91223 92908;92909;92910;92911 92910 4 KIQQNTFTR MPATEKDLAEDAPWKKIQQNTFTRWCNEHL EDAPWKKIQQNTFTRWCNEHLKCVSKRIAN K K I T R W 0 1 1 0 0 2 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 9 1 1134.6146 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 43 51 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.025826 41.029 By matching By MS/MS 2 3 1.1561 1.1188 19.407 5 Median 1.2214 1.2354 0.27295 2 0 Median 0.90484 0.88095 16.434 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3069600 1478000 1591600 705660 320100 385560 2363900 1157900 1206100 0 0 0 0 0 0 0 0 0 0 0 0 17552 2088;3120;1664;2871 18296 91224;91225;91226;91227;91228 92912;92913 92912 2 KIQVLQQQADDAEER ______________________________ KIQVLQQQADDAEERAERLQREVEGERRAR R K I E R A 2 1 0 2 0 4 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1769.8908 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 13 27 TPM3 yes no 2;3 4.4021E-21 193.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1.2171 1.1314 9.1994 8 Median 1.1128 1.1179 0.61878 2 0 Median 1.3017 1.1966 5.6077 3 0 Median 0.95035 1.0413 NaN 1 0 Median 1.2081 1.1401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5841 1.4097 NaN 1 0 Median 67296000 30358000 36938000 25381000 11864000 13517000 29944000 12873000 17071000 2088700 1121400 967210 8109900 3801000 4308900 0 0 0 1772000 698470 1073500 17553 63 18297 91229;91230;91231;91232;91233;91234;91235;91236 92914;92915;92916;92917;92918;92919;92920;92921;92922;92923;92924;92925;92926;92927;92928 92917 15 KIQVLQQQADDAEERAER ______________________________ VLQQQADDAEERAERLQREVEGERRAREQA R K I E R L 3 2 0 2 0 4 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 18 2 2126.0716 A0A087WWU8;D6R904;Q5VU61 A0A087WWU8 13 30 TPM3 yes no 3;4 5.7004E-13 138.55 By MS/MS By MS/MS By matching 2 2 1 1.1433 1.1982 7.4018 5 Median 1.0923 1.1448 6.4469 2 0 Median 1.2876 1.1925 8.2793 2 0 Median 1.1078 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65593000 29180000 36414000 43477000 20025000 23452000 19611000 7893700 11717000 2505100 1260400 1244700 0 0 0 0 0 0 0 0 0 17554 63 18298 91237;91238;91239;91240;91241 92929;92930;92931;92932;92933;92934;92935;92936 92930 8 KIRDILAQVK VKIIGHFYASQMAQRKIRDILAQVKQQHQK QMAQRKIRDILAQVKQQHQKGQSNQAQARR R K I V K Q 1 1 0 1 0 1 0 0 0 2 1 2 0 0 0 0 0 0 0 1 0 0 10 2 1182.7448 Q9NZI8 Q9NZI8 552 561 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 0.0067995 73.499 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4543200 0 4543200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4543200 0 4543200 17555 4188 18299 91242 92937 92937 1 KISAIHILDVLVLNGTDVR VEIVHELKGEGKAQRKISAIHILDVLVLNG IHILDVLVLNGTDVREQHFNQRIQLAEKFV R K I V R E 1 1 1 2 0 0 0 1 1 3 3 1 0 0 0 1 1 0 0 3 0 0 19 1 2075.2103 Q8N1G2;H0Y4T0;H0YCQ1 Q8N1G2 654 672 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes no 3 4.3109E-05 38.915 By MS/MS 1 1.3648 1.3641 NaN 1 Median NaN NaN NaN 0 0 Median 1.3648 1.3641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2328600 739090 1589500 0 0 0 2328600 739090 1589500 0 0 0 0 0 0 0 0 0 0 0 0 17556 3358 18300 91243 92938 92938 1 KISEIEDAAFLAR EITYGQKVMEKETEKKISEIEDAAFLAREK EKKISEIEDAAFLAREKAKADAECYTAMKI K K I A R E 3 1 0 1 0 0 2 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 13 1 1461.7827 O94905;E5RHW4 O94905 241 253 ERLIN2 Erlin-2 yes no 3 0.00030931 56.122 By MS/MS 1 0.90375 0.96818 NaN 1 Median 0.90375 0.96818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4457700 2023100 2434600 4457700 2023100 2434600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17557 848 18301 91244 92939 92939 1 KISELDAFLKEPALNEANLSNLK LCTKTENLLGSYFPKKISELDAFLKEPALN LKEPALNEANLSNLKAPLDIPVPDPVKEKE K K I L K A 3 0 3 1 0 0 3 0 0 1 5 3 0 1 1 2 0 0 0 0 0 0 23 2 2556.3799 Q06323 Q06323 36 58 PSME1 Proteasome activator complex subunit 1 yes yes 4 0.012552 18.248 By MS/MS 1 0.94403 0.93767 NaN 1 Median NaN NaN NaN 0 0 Median 0.94403 0.93767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2536300 1173400 1362900 0 0 0 2536300 1173400 1362900 0 0 0 0 0 0 0 0 0 0 0 0 17558 2724 18302 91245 92940 92940 1 KISGGSVVEMQGDEMTR ______________________________ SGGSVVEMQGDEMTRIIWELIKEKLIFPYV K K I T R I 0 1 0 1 0 1 2 3 0 1 0 1 2 0 0 2 1 0 0 2 0 0 17 1 1822.8553 O75874;C9J4N6;C9JJE5;C9JLU6 O75874 4 20 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes no 3 0.052615 8.9424 By MS/MS 1 1.4262 1.3309 NaN 1 Median NaN NaN NaN 0 0 Median 1.4262 1.3309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1218900 520570 698310 0 0 0 1218900 520570 698310 0 0 0 0 0 0 0 0 0 0 0 0 17559 1701 18303 91246 92941 92941 1 KISIEGNIAAGK SCPSFSASSEGTRIKKISIEGNIAAGKSTF RIKKISIEGNIAAGKSTFVNILKQLCEDWE K K I G K S 2 0 1 0 0 0 1 2 0 3 0 2 0 0 0 1 0 0 0 0 0 0 12 1 1199.6874 P27707;D6RFG8;D6RCP9 P27707 23 34 DCK Deoxycytidine kinase yes no 2;3 0.00095298 62.303 By MS/MS By MS/MS 1 1 1.1344 1.0701 33.721 2 Median 0.86745 0.84305 NaN 1 0 Median 1.4836 1.3582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4561900 2158500 2403400 2324600 1246400 1078300 2237200 912080 1325200 0 0 0 0 0 0 0 0 0 0 0 0 17560 826 18304 91247;91248 92942;92943 92943 1 KISIPVDISDSDMMLNIINSSITTK SAYRKALDDMISTLKKISIPVDISDSDMML SDMMLNIINSSITTKAISRWSSLACNIALD K K I T K A 0 0 2 3 0 0 0 0 0 6 1 2 2 0 1 5 2 0 0 1 0 0 25 1 2734.4133 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;E9PQ35 P49368 139 163 CCT3 T-complex protein 1 subunit gamma yes no 3 0.0087174 18.101 By MS/MS By matching 1 1 0.84488 0.80323 19.738 2 Median 0.97274 0.92353 NaN 1 0 Median 0.73382 0.6986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2938500 1398800 1539700 2750000 1290700 1459300 188460 108060 80404 0 0 0 0 0 0 0 0 0 0 0 0 17561 2379 18305 91249;91250 92944;92945 92945 2 KISLEDIQAFEK TQDRDWEAYWRLLFKKISLEDIQAFEKTYK LFKKISLEDIQAFEKTYKGSEEELADIKQA K K I E K T 1 0 0 1 0 1 2 0 0 2 1 2 0 1 0 1 0 0 0 0 0 0 12 1 1419.7609 Q8WXX5 Q8WXX5 107 118 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 0.0042522 48.44 By MS/MS By matching By matching 2 1 1 1.0283 1.0428 15.771 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0283 1.0763 8.7118 2 1 Median 1.2238 1.0746 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93254 0.79776 NaN 1 0 Median 11926000 5841300 6084400 0 0 0 0 0 0 11234000 5481800 5751800 435570 219380 216190 0 0 0 256490 140130 116370 17562 3522 18306 91251;91252;91253;91254 92946;92947;92948 92946 3 KISNQFDWALMR AKEKDIQEESTFSSRKISNQFDWALMRLDL SSRKISNQFDWALMRLDLSVRRTGRIPKKL R K I M R L 1 1 1 1 0 1 0 0 0 1 1 1 1 1 0 1 0 1 0 0 0 0 12 1 1507.7606 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 78 89 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 0.0003515 95.573 By MS/MS By MS/MS 4 1 0.98178 1.0227 21.132 5 Median 0.95755 0.99755 10.438 4 2 Median NaN NaN NaN 0 0 Median 1.3381 1.5256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29247000 15034000 14214000 27415000 14263000 13151000 0 0 0 1832900 770320 1062600 0 0 0 0 0 0 0 0 0 17563 2315 18307 91255;91256;91257;91258;91259 92949;92950;92951;92952;92953 92952 5 KISSDLDGHPVPK AEAGFLAEAELLNLRKISSDLDGHPVPKQA LRKISSDLDGHPVPKQAFTDVATGSLGQGL R K I P K Q 0 0 0 2 0 0 0 1 1 1 1 2 0 0 2 2 0 0 0 1 0 0 13 1 1391.7409 P29401;E9PFF2;F8W888 P29401 102 114 TKT Transketolase yes no 3 5.2563E-06 94.09 By MS/MS By MS/MS By MS/MS 3 2 1 0.80245 0.74994 39.514 6 Median 0.72919 0.68329 35.242 3 2 Median 1.0238 0.94573 23.776 2 0 Median NaN NaN NaN 0 0 Median 1.1649 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52001000 28503000 23498000 30256000 17404000 12852000 20652000 10619000 10033000 0 0 0 1093100 480720 612370 0 0 0 0 0 0 17564 2173 18308 91260;91261;91262;91263;91264;91265 92954;92955;92956;92957;92958 92957 5 KISSIQSIVPALEIANAHR QKCEFQDAYVLLSEKKISSIQSIVPALEIA IQSIVPALEIANAHRKPLVIIAEDVDGEAL K K I H R K 3 1 1 0 0 1 1 0 1 4 1 1 0 0 1 3 0 0 0 1 0 0 19 1 2046.1586 P10809 P10809 250 268 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3;4 9.3964E-09 82.482 By MS/MS By matching By MS/MS By matching 2 4 2 1 0.99156 1.0703 17.12 9 Median 0.9769 0.97844 2.1217 2 0 Median 1.1846 1.077 15.111 4 0 Median 0.90608 1.0124 11.722 2 0 Median 1.674 1.5349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100770000 46042000 54724000 50154000 23628000 26526000 41484000 17904000 23580000 8982700 4457700 4525100 145860 52746 93110 0 0 0 0 0 0 17565 1947 18309 91266;91267;91268;91269;91270;91271;91272;91273;91274 92959;92960;92961;92962;92963;92964;92965;92966;92967;92968 92964 10 KISVVSATK DEEKKESSLPKSFKRKISVVSATKGVPAGN PKSFKRKISVVSATKGVPAGNSDTEGGQPG R K I T K G 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 2 1 0 0 2 0 0 9 1 931.57023 S4R3H4;E7EQT4;Q9UKV3;G3V3T3 S4R3H4 765 773 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.032339 38.303 By matching By MS/MS By MS/MS 2 3 2 1.0384 1.0667 6.3951 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9402 1.0866 5.2381 2 0 Median NaN NaN NaN 0 0 Median 1.0384 1.1374 4.471 3 0 Median 1.1261 1.0118 7.0371 2 0 Median 12258000 5984000 6273800 0 0 0 0 0 0 1035600 499580 536060 0 0 0 7789900 3793400 3996500 3432200 1691000 1741300 17566 4560 18310 91275;91276;91277;91278;91279;91280;91281 92969;92970;92971 92970 3 KITDGLHALQEASNK VEDSKTLAAKEKEVKKITDGLHALQEASNK KITDGLHALQEASNKDAEALAAAQQHFNAV K K I N K D 2 0 1 1 0 1 1 1 1 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1623.858 O95347 O95347 354 368 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 5.7933E-09 123.42 By matching By MS/MS 1 1 0.85997 0.81033 43.606 2 Median NaN NaN NaN 0 0 Median 0.63869 0.59532 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1579 1.103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15752000 7341900 8410500 0 0 0 3965100 2182400 1782700 0 0 0 11787000 5159500 6627800 0 0 0 0 0 0 17567 1766 18311 91282;91283 92972;92973 92972 2 KITEAIGIISK EMLVQYLQDAYSFSRKITEAIGIISKMMYE SFSRKITEAIGIISKMMYENTTTVVQEVIE R K I S K M 1 0 0 0 0 0 1 1 0 4 0 2 0 0 0 1 1 0 0 0 0 0 11 1 1171.7176 Q15021;E7EN77 Q15021 633 643 NCAPD2 Condensin complex subunit 1 yes no 2 0.00041659 72.652 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 3 1 1.0878 1.0321 11.573 8 Median 1.1329 1.0896 NaN 1 0 Median 0.97965 0.92679 5.6389 2 0 Median 1.092 1.2583 NaN 1 0 Median 1.097 1.0321 6.8262 3 0 Plateau NaN NaN NaN 0 0 Median 1.2863 1.1479 NaN 1 0 Median 36624000 16282000 20342000 12989000 5674100 7315300 8096900 3826900 4270000 7504700 3060400 4444300 7572200 3498200 4074000 0 0 0 461210 222580 238630 17568 2915 18312 91284;91285;91286;91287;91288;91289;91290;91291 92974;92975;92976;92977;92978 92978 5 KITIADCGQLE EAMERFGSRNGKTSKKITIADCGQLE____ KTSKKITIADCGQLE_______________ K K I L E - 1 0 0 1 1 1 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1246.6227 P62937 P62937 155 165 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 0.00020253 111.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 1.138 0.99555 13.984 7 Median 1.138 1.0672 NaN 1 0 Median 1.1813 0.98574 10.027 2 0 Median 1.0817 1.0114 NaN 1 0 Median 1.2076 0.99215 0.48326 2 0 Median NaN NaN NaN 0 0 Median 0.89153 0.71139 NaN 1 0 Median 624740000 281890000 342860000 71117000 32403000 38714000 309130000 136350000 172780000 231360000 107210000 124150000 12784000 5746700 7037000 0 0 0 358270 177950 180320 17569 2611 18313 91292;91293;91294;91295;91296;91297;91298 92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989 92986 11 KITIGQAPTEK ITWQRVLDTNDRFLRKITIGQAPTEKGHTR RFLRKITIGQAPTEKGHTRTAQFDISVASE R K I E K G 1 0 0 0 0 1 1 1 0 2 0 2 0 0 1 0 2 0 0 0 0 0 11 1 1184.6765 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 543 553 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 0.00017186 120.54 By MS/MS By MS/MS By matching By MS/MS By matching 4 4 1 1 1 1.0616 0.98086 15.551 9 Median 0.90807 0.95291 19.551 3 0 Median 1.0616 0.98086 7.2619 3 0 Median 1.3392 1.3593 NaN 1 0 Median 0.94967 0.90463 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0824 0.98135 NaN 1 0 Median 47702000 20867000 26835000 10529000 4413700 6115400 28383000 12951000 15432000 7352000 2801600 4550300 891530 412200 479330 0 0 0 546340 288270 258070 17570 1968 18314 91299;91300;91301;91302;91303;91304;91305;91306;91307;91308;91309 92990;92991;92992;92993;92994;92995;92996;92997;92998 92994 9 KITSQIFIGPTYYQR HLRGNEVLYNGFTGRKITSQIFIGPTYYQR KITSQIFIGPTYYQRLKHMVDDKIHSRARG R K I Q R L 0 1 0 0 0 2 0 1 0 3 0 1 0 1 1 1 2 0 2 0 0 0 15 1 1813.9727 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 1029 1043 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 5.5261E-05 72.417 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 2 0.93391 0.99598 19.368 6 Median 1.0198 1.0608 NaN 1 0 Median 1.0668 1.0236 NaN 1 0 Median 0.85525 0.96914 NaN 1 0 Median 1.0999 1.057 NaN 1 0 Median 0.7231 0.77214 27.178 2 0 Median NaN NaN NaN 0 0 Median 21428000 10787000 10641000 3695400 1656600 2038800 687680 305100 382580 8848000 4617600 4230400 353420 152280 201140 7843400 4055100 3788300 0 0 0 17571 671 18315 91310;91311;91312;91313;91314;91315 92999;93000;93001;93002 93001 3 KITSYFLNEGSQARPR VIWEDSASENQEGLRKITSYFLNEGSQARP ITSYFLNEGSQARPRSSHRYFLERGLESAT R K I P R S 1 2 1 0 0 1 1 1 0 1 1 1 0 1 1 2 1 0 1 0 0 0 16 2 1865.9748 O75792 O75792 267 282 RNASEH2A Ribonuclease H2 subunit A yes yes 3 0.014594 22.803 By MS/MS 1 0.66352 0.69542 NaN 1 Median 0.66352 0.69542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6446700 3322300 3124400 6446700 3322300 3124400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17572 1695 18316 91316 93003 93003 1 KIVDAVIK EKLSPNPPNLTKKMKKIVDAVIKYKDSSSG NLTKKMKKIVDAVIKYKDSSSGRQLSEVFI K K I I K Y 1 0 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 2 0 0 8 1 884.5695 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A2R8YF38 P51532 1464 1471 SMARCA4 Transcription activator BRG1 yes no 2 0.0091069 71.379 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0045 1.0204 18.57 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88267 1.0206 NaN 1 0 Median 1.4803 1.3891 NaN 1 0 Median 0.85909 0.89771 NaN 1 0 Median 1.1432 1.0201 NaN 1 0 Median 14556000 7463100 7092800 0 0 0 0 0 0 8229500 4667300 3562200 2393200 1064500 1328700 1157900 639580 518360 2775300 1091800 1683500 17573 366 18317 91317;91318;91319;91320 93004;93005;93006 93004 3 KIVDQIRPDR EADRMLDMGFEPQIRKIVDQIRPDRQTLMW EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ R K I D R Q 0 2 0 2 0 1 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 10 2 1238.7095 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 264 273 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2;3 0.00047186 78.334 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 8 8 7 6 1.0381 1.0619 11.985 37 Median 1.2552 1.2672 11.214 3 0 Plateau 0.93255 1.1184 5.2989 5 0 Median 0.91022 1.0351 13.338 8 0 Median 1.0506 1.0382 14.024 8 0 Median 0.91898 1.0353 13.092 7 0 Median 1.0994 1.0255 12.718 6 0 Median 397130000 198030000 199100000 16939000 6998300 9941100 37072000 18050000 19022000 191660000 99437000 92220000 26528000 12408000 14119000 80653000 40065000 40587000 44281000 21072000 23210000 17574 1334;343 18318 91321;91322;91323;91324;91325;91326;91327;91328;91329;91330;91331;91332;91333;91334;91335;91336;91337;91338;91339;91340;91341;91342;91343;91344;91345;91346;91347;91348;91349;91350;91351;91352;91353;91354;91355;91356;91357 93007;93008;93009;93010;93011;93012;93013;93014;93015;93016;93017;93018;93019;93020;93021;93022;93023;93024;93025;93026;93027;93028;93029;93030;93031;93032;93033;93034;93035;93036;93037;93038;93039;93040;93041;93042;93043;93044;93045;93046;93047;93048;93049;93050;93051;93052;93053;93054;93055;93056;93057;93058;93059 93024 53 KIVFVTGNAK ______________________________ SLVGKKIVFVTGNAKKLEEVVQILGDKFPC K K I A K K 1 0 1 0 0 0 0 1 0 1 0 2 0 1 0 0 1 0 0 2 0 0 10 1 1075.639 Q9BY32 Q9BY32 9 18 ITPA Inosine triphosphate pyrophosphatase yes yes 2 0.0050103 56.432 By MS/MS By MS/MS 1 2 1.2114 0.97797 14.263 3 Plateau 1.2128 1.2334 NaN 1 0 Median 1.0715 0.96456 1.9526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11575000 5285300 6289700 8696300 3991200 4705100 2878700 1294100 1584600 0 0 0 0 0 0 0 0 0 0 0 0 17575 3884 18319 91358;91359;91360 93060;93061;93062;93063;93064 93061 5 KIVITDCGQLS KKIESFGSKSGRTSKKIVITDCGQLS____ RTSKKIVITDCGQLS_______________ K K I L S - 0 0 0 1 1 1 0 1 0 2 1 1 0 0 0 1 1 0 0 1 0 0 11 1 1232.6435 P30405 P30405 197 207 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 2 0.0029326 55.567 By MS/MS By matching By matching By matching 1 1 1 1 1.0218 0.91234 76.041 4 Median NaN NaN NaN 0 0 Median 1.4954 1.2838 NaN 1 0 Median 0.79716 0.76754 NaN 1 0 Median 1.3099 1.0845 NaN 1 0 Median 0.22692 0.23759 NaN 1 0 Median NaN NaN NaN 0 0 Median 22075000 16332000 5743200 0 0 0 4541100 1826300 2714900 1908800 1040300 868520 2092800 968260 1124500 13532000 12497000 1035200 0 0 0 17576 2192 18320 91361;91362;91363;91364 93065 93065 1 KIVNSAQTGSFK PPTPAEIPRAIQSLKKIVNSAQTGSFKQLT SLKKIVNSAQTGSFKQLTVKEAVLNGLVAT K K I F K Q 1 0 1 0 0 1 0 1 0 1 0 2 0 1 0 2 1 0 0 1 0 0 12 1 1278.6932 O75964;E9PN17;A0A3B3ITX4 O75964 55 66 ATP5L ATP synthase subunit g, mitochondrial yes no 2;3 0.0011292 51.092 By matching By MS/MS By matching By matching By matching 2 5 1 1 1 1.2844 1.0033 17.698 10 Median 1.0228 0.95783 4.6508 2 0 Median 1.3308 1.0168 8.2281 5 0 Median 1.1588 0.84645 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7511 1.253 NaN 1 0 Median 1.5565 1.5587 NaN 1 0 Median 32686000 14712000 17974000 9185100 4755900 4429200 22209000 9378300 12831000 826440 399190 427240 0 0 0 319110 127170 191940 146530 51219 95309 17577 1713 18321 91365;91366;91367;91368;91369;91370;91371;91372;91373;91374 93066;93067;93068;93069;93070;93071 93071 6 KIWCFGPDGTGPNILTDITK RYLAEKYEWDVAEARKIWCFGPDGTGPNIL GPDGTGPNILTDITKGVQYLNEIKDSVVAG R K I T K G 0 0 1 2 1 0 0 3 0 3 1 2 0 1 2 0 3 1 0 0 0 0 20 1 2232.1249 P13639 P13639 648 667 EEF2 Elongation factor 2 yes yes 3 9.7286E-08 58.366 By MS/MS By MS/MS By matching 3 1 1 0.75911 0.85702 41.134 5 Median 1.046 1.1043 57.564 3 0 Median 0.75911 0.73528 NaN 1 0 Median 0.73972 0.85702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16788000 9089300 7698500 4695800 2449300 2246400 11581000 6294900 5285800 511390 345060 166320 0 0 0 0 0 0 0 0 0 17578 1992 18322 91375;91376;91377;91378;91379 93072;93073 93073 2 KIYEDGDDDMKR DTETDPSEGLMNVLKKIYEDGDDDMKRTIN VLKKIYEDGDDDMKRTINKAWVESREKQAK K K I K R T 0 1 0 4 0 0 1 1 0 1 0 2 1 0 0 0 0 0 1 0 0 0 12 2 1483.6613 Q9HB71 Q9HB71 197 208 CACYBP Calcyclin-binding protein yes yes 2;3 0.0003409 84.17 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 1 1.1529 1.0723 10.563 8 Median 1.0748 1.1444 12.977 3 0 Median 1.1529 0.99958 0.059472 2 0 Median 0.9895 1.1079 NaN 1 0 Median 1.1911 0.98249 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2378 1.161 NaN 1 0 Median 25255000 11597000 13658000 8900900 3998900 4902000 12667000 5819300 6847600 1712600 876870 835740 1073900 463930 609940 0 0 0 900760 438240 462520 17579 4016 18323 91380;91381;91382;91383;91384;91385;91386;91387 93074;93075;93076;93077;93078;93079;93080;93081;93082;93083;93084 93079 11 KIYELAGK GGLFTALEKRSAEPRKIYELAGKMKDLSLG KRSAEPRKIYELAGKMKDLSLGGVLLFPVD R K I G K M 1 0 0 0 0 0 1 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 8 1 920.53312 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 764 771 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.037194 42.109 By MS/MS 1 1.2822 1.2214 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2822 1.2214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1113500 428020 685470 0 0 0 0 0 0 0 0 0 1113500 428020 685470 0 0 0 0 0 0 17580 3293 18324 91388 93085 93085 1 KIYQDAYR RRIAQRWRELPDSKKKIYQDAYRAEWQVYK ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K K I Y R A 1 1 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 8 1 1055.54 Q00059;H7BYN3 Q00059 97 104 TFAM Transcription factor A, mitochondrial yes no 2 0.019003 53.166 By matching By matching By MS/MS By matching 1 1 1 1 1.203 1.17 14.509 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93463 0.96082 NaN 1 0 Median 1.5246 1.3496 NaN 1 0 Median 1.0568 1.1147 NaN 1 0 Median 1.3695 1.2281 NaN 1 0 Median 5179900 2325900 2853900 0 0 0 0 0 0 2214700 1008900 1205800 594050 266040 328000 1676800 764700 912140 694260 286260 408000 17581 2673 18325 91389;91390;91391;91392 93086 93086 1 KIYQNIQDGSLDLNAAESGVQHKPSAPQGGR KTGENVEDAFLEAAKKIYQNIQDGSLDLNA ESGVQHKPSAPQGGRLTSEPQPQREGCGC_ K K I G R L 3 1 2 2 0 4 1 4 1 2 2 2 0 0 2 3 0 0 1 1 0 0 31 2 3277.644 P61106 P61106 171 201 RAB14 Ras-related protein Rab-14 yes yes 4 2.3924E-05 31.252 By matching By MS/MS 1 1 1.006 0.9666 15.774 2 Median 0.81198 0.86459 NaN 1 0 Median 1.2464 1.0807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29058000 14795000 14263000 25624000 13287000 12337000 3434100 1508100 1926000 0 0 0 0 0 0 0 0 0 0 0 0 17582 2545 18326 91393;91394 93087 93087 1 KIYSTLAGTR FNGFNSLLNNMELIRKIYSTLAGTRKDVEV MELIRKIYSTLAGTRKDVEVTKEEFVLAAQ R K I T R K 1 1 0 0 0 0 0 1 0 1 1 1 0 0 0 1 2 0 1 0 0 0 10 1 1108.6241 O75746;Q9UJS0 Q9UJS0 235 244 SLC25A12;SLC25A13 Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2 no no 2 0.0012416 70.552 By MS/MS By MS/MS 1 1 1.0987 1.0506 16.587 2 Median 0.93107 0.93434 NaN 1 0 Median 1.2965 1.1813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20764000 9818300 10945000 8969400 4924400 4045000 11794000 4893900 6900500 0 0 0 0 0 0 0 0 0 0 0 0 17583 4297;1694 18327 91395;91396 93088;93089;93090 93090 3 KKAEAVVNTVDISER ARKKRRMLKRLEQTRKKAEAVVNTVDISER KKAEAVVNTVDISEREKVAQLRSLYKKAGL R K K E R E 2 1 1 1 0 0 2 0 0 1 0 2 0 0 0 1 1 0 0 3 0 0 15 2 1657.8999 Q8IY81 Q8IY81 762 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 8.9518E-05 69.729 By MS/MS By MS/MS 2 4 1.2714 1.3348 17.665 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0165 1.1964 13.918 2 0 Median 1.3995 1.3729 18.53 4 2 Median 23537000 9779400 13758000 0 0 0 0 0 0 0 0 0 0 0 0 11853000 5353400 6499400 11684000 4426000 7258300 17584 3338 18328 91397;91398;91399;91400;91401;91402 93091;93092;93093;93094;93095;93096;93097 93091 7 KKDDETVDSLGPLEK AYFLYMYSRYLSGEKKKDDETVDSLGPLEK KKDDETVDSLGPLEKGQVKNEALRELRVEL K K K E K G 0 0 0 3 0 0 2 1 0 0 2 3 0 0 1 1 1 0 0 1 0 0 15 2 1672.8519 Q9UJX2 Q9UJX2 129 143 CDC23 Cell division cycle protein 23 homolog yes yes 3 0.00012265 61.165 By MS/MS By MS/MS By matching 1 1 1 0.93848 0.9651 41.453 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81677 0.9651 NaN 1 0 Median 0.93848 0.82357 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2739 1.8038 NaN 1 0 Median 12955000 6486200 6469000 0 0 0 0 0 0 4787100 2484900 2302300 6687000 3489600 3197400 0 0 0 1481100 511730 969360 17585 4300 18329 91403;91404;91405 93098;93099;93100;93101 93101 4 KKDEELSSALEK DQEVAEVDKNIELLKKKDEELSSALEKMEN LLKKKDEELSSALEKMENQSENNDIDEVII K K K E K M 1 0 0 1 0 0 3 0 0 0 2 3 0 0 0 2 0 0 0 0 0 0 12 2 1375.7195 F5H442;Q99816 F5H442 293 304 TSG101 Tumor susceptibility gene 101 protein yes no 3 0.010769 27.098 By matching By matching By MS/MS 2 2 1 1.2177 1.2239 19.268 5 Median 1.0862 1.0669 19.414 2 0 Median 1.4615 1.2753 27.472 2 0 Median 1.0626 1.2464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6188600 2842100 3346500 2036200 910570 1125600 2703900 1117200 1586800 1448500 814380 634070 0 0 0 0 0 0 0 0 0 17586 1030 18330 91406;91407;91408;91409;91410 93102 93102 1 KKDFDTALK KQALKEKELGNDAYKKKDFDTALKHYDKAK GNDAYKKKDFDTALKHYDKAKELDPTNMTY K K K L K H 1 0 0 2 0 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 9 2 1064.5866 P31948 P31948 238 246 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.022128 56.258 By matching By MS/MS 1 1 1.0761 1.0651 11.38 2 Median 1.1312 1.1544 NaN 1 0 Median 1.0236 0.98276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4835100 2243900 2591200 2211900 952660 1259200 2623200 1291200 1332000 0 0 0 0 0 0 0 0 0 0 0 0 17587 2212 18331 91411;91412 93103 93103 1 KKDLSLEEIQK RSKESVPEFPLSPPKKKDLSLEEIQKKLEA SPPKKKDLSLEEIQKKLEAAEERRKSHEAE K K K Q K K 0 0 0 1 0 1 2 0 0 1 2 3 0 0 0 1 0 0 0 0 0 0 11 2 1329.7504 A2A2D0;P16949;E5RGX5;Q93045 A2A2D0 42 52 STMN1;STMN2 Stathmin;Stathmin-2 no no 3 7.7922E-05 73.781 By MS/MS By MS/MS 1 1 1.0827 1.0703 17.969 2 Median 0.87036 0.94255 NaN 1 0 Median 1.3468 1.2153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14407000 7189600 7217500 11648000 6090400 5557900 2758800 1099200 1659600 0 0 0 0 0 0 0 0 0 0 0 0 17588 496;843 18332 91413;91414 93104;93105;93106 93106 3 KKDQVTAQEIFQDNHEDGPTAK PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH QEIFQDNHEDGPTAKKLKTEQGGAHFSVSS K K K A K K 2 0 1 3 0 3 2 1 1 1 0 3 0 1 1 0 2 0 0 1 0 0 22 2 2498.2037 P13010 P13010 544 565 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3;4;5 6.0254E-16 97.945 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 11 7 1 0.80281 0.85692 24.858 23 Median 0.87051 0.85055 2.9505 2 0 Median 1.2221 1.1924 16.999 2 0 Median 0.66851 0.81549 22.153 11 2 Median 1.0018 1.0627 16.112 7 0 Median 0.61411 0.68464 NaN 1 0 Median NaN NaN NaN 0 0 Median 348590000 185020000 163570000 48380000 24441000 23939000 3326200 1348400 1977800 189170000 106890000 82275000 98412000 47432000 50980000 9304200 4903900 4400300 0 0 0 17589 1986 18333 91415;91416;91417;91418;91419;91420;91421;91422;91423;91424;91425;91426;91427;91428;91429;91430;91431;91432;91433;91434;91435;91436;91437 93107;93108;93109;93110;93111;93112;93113;93114;93115;93116;93117;93118;93119;93120;93121;93122;93123;93124;93125;93126;93127;93128;93129;93130;93131 93130 25 KKDTAASGYGTQNIR GKNCTAGAVYTYHEKKKDTAASGYGTQNIR KKDTAASGYGTQNIRLSRDAVKDFDCCCLS K K K I R L 2 1 1 1 0 1 0 2 0 1 0 2 0 0 0 1 2 0 1 0 0 0 15 2 1608.822 Q9Y314;M0R3B2;A0A075B6F9;M0R1K2;M0QX85;M0R1T7 Q9Y314 20 34 NOSIP Nitric oxide synthase-interacting protein yes no 3 0.018884 22.365 By matching By matching By MS/MS 1 1 1 1.0073 1.0509 24.305 3 Median NaN NaN NaN 0 0 Median 1.0073 1.0509 NaN 1 0 Median 1.292 1.4632 NaN 1 0 Median 0.93827 0.911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2101800 1096700 1005000 0 0 0 294820 164450 130380 428060 192400 235660 1378900 739870 638990 0 0 0 0 0 0 17590 4401 18334 91438;91439;91440 93132;93133 93133 2 KKDYEVELLR SQKEKDAYHKKCDQKKKDYEVELLRFLESL KCDQKKKDYEVELLRFLESLPEEEQQRVLG K K K L R F 0 1 0 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 10 2 1291.7136 P17480;E9PKP7 P17480 351 360 UBTF Nucleolar transcription factor 1 yes no 3 0.00086639 59.542 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1.3246 1.3263 10.352 4 Median NaN NaN NaN 0 0 Median 1.7809 1.5497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0871 1.2811 NaN 1 0 Median 1.3246 1.2949 8.302 2 0 Median 27437000 12410000 15027000 0 0 0 1354500 447360 907090 0 0 0 0 0 0 19115000 8789100 10326000 6966900 3173800 3793100 17591 2040 18335 91441;91442;91443;91444;91445 93134;93135;93136;93137;93138 93138 5 KKEELYLQR CHEMKPNLGAIAEYKKKEELYLQRVAELDK AIAEYKKKEELYLQRVAELDKITYERDSFR K K K Q R V 0 1 0 0 0 1 2 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 2 1205.6768 Q9NTJ3;E9PD53 Q9NTJ3 1098 1106 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.020394 27.742 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0971 1.1445 9.484 5 Median 1.1053 1.1683 NaN 1 0 Median 1.0497 1.1153 3.6506 2 0 Median 0.85169 0.97049 NaN 1 0 Median 1.118 1.2513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9882500 4615400 5267100 3263400 1496500 1766900 4003700 1874600 2129100 1214600 646040 568520 1400900 598190 802700 0 0 0 0 0 0 17592 4108 18336 91446;91447;91448;91449;91450 93139;93140;93141;93142;93143;93144 93139 6 KKEGETVEPYK LYHLGVVEAYSGLTKKKEGETVEPYKVNLS GLTKKKEGETVEPYKVNLSQDLEHQLQNII K K K Y K V 0 0 0 0 0 0 3 1 0 0 0 3 0 0 1 0 1 0 1 1 0 0 11 2 1306.6769 Q08211 Q08211 265 275 DHX9 ATP-dependent RNA helicase A yes yes 3 0.05096 17.809 By matching By matching By MS/MS By matching 1 1 2 3 0.96093 1.1547 8.4421 7 Median 1.0733 1.1251 NaN 1 0 Median 1.2188 1.1575 NaN 1 0 Median 0.96093 1.1547 0 2 0 Median NaN NaN NaN 0 0 Median 0.95339 1.116 14.513 3 0 Median NaN NaN NaN 0 0 Median 3613000 1695300 1917800 66892 32229 34663 904870 412630 492240 813080 396650 416420 0 0 0 1828200 853740 974440 0 0 0 17593 2736 18337 91451;91452;91453;91454;91455;91456;91457 93145 93145 1 KKEIEELQSQAQALSQEGK LLKKQQMLENQMEVRKKEIEELQSQAQALS EELQSQAQALSQEGKSTDEVDSKRLTVQTK R K K G K S 2 0 0 0 0 4 4 1 0 1 2 3 0 0 0 2 0 0 0 0 0 0 19 2 2143.1121 Q01082;A0A087WUZ3 Q01082 1433 1451 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3;4 7.2246E-31 183.88 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 4 2 2 1 1.0047 1.129 22.893 12 Median 1.2235 1.3396 19.498 2 0 Median 1.1408 1.1883 NaN 1 0 Median 0.85423 0.98969 15.109 4 0 Median 1.0573 1.0716 4.683 2 0 Median 1.1491 1.3451 22.07 2 1 Median 0.63247 0.6872 NaN 1 0 Median 233790000 129390000 104400000 30154000 13119000 17035000 10767000 5002600 5764700 176350000 103210000 73144000 4683800 2343000 2340800 11353000 5417800 5934900 479600 297780 181820 17594 2681 18338 91458;91459;91460;91461;91462;91463;91464;91465;91466;91467;91468;91469 93146;93147;93148;93149;93150;93151;93152;93153;93154;93155;93156 93150 11 KKELDEEESIR GELDLDKQSELRALRKKELDEEESIRKKAV RALRKKELDEEESIRKKAVQFGTGELCDAI R K K I R K 0 1 0 1 0 0 4 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 11 2 1374.6991 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 374 384 KIAA1279 KIF1-binding protein yes no 3 0.0041778 59.542 By MS/MS By MS/MS 1 1 0.85926 0.87954 30.104 2 Median 0.98798 1.0882 NaN 1 0 Median 0.74732 0.7109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5751600 2973100 2778500 2149900 1023700 1126100 3601800 1949400 1652400 0 0 0 0 0 0 0 0 0 0 0 0 17595 323 18339 91470;91471 93157;93158;93159 93158 3 KKELEEEVNNFQK LKRTHQEEKKKVEDKKKELEEEVNNFQKKK DKKKELEEEVNNFQKKKAAAQLLQSQAQQS K K K Q K K 0 0 2 0 0 1 4 0 0 0 1 3 0 1 0 0 0 0 0 1 0 0 13 2 1633.8312 D6RGI3;D6RER5;Q9NVA2;H0Y961;H0Y9G8 D6RGI3 385 397 SEPT11 Septin-11 yes no 3 3.4212E-07 114.72 By MS/MS By MS/MS 1 2 1.2429 1.1947 6.9321 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98827 1.1592 NaN 1 0 Median 1.2553 1.2573 7.2213 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49573000 23038000 26535000 0 0 0 0 0 0 22892000 11287000 11605000 26681000 11752000 14930000 0 0 0 0 0 0 17596 822 18340 91472;91473;91474 93160;93161;93162;93163;93164 93163 5 KKELEEIVQPIISK LESHQDADIEDFKAKKKELEEIVQPIISKL KKKELEEIVQPIISKLYGSAGPPPTGEEDT K K K S K L 0 0 0 0 0 1 3 0 0 3 1 3 0 0 1 1 0 0 0 1 0 0 14 2 1652.9713 P11021 P11021 620 633 HSPA5 78 kDa glucose-regulated protein yes yes 2;3;4 1.2693E-06 115.37 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 4 2 3 2 2 1.0931 1.0716 17.712 18 Median 1.0372 1.0135 9.0994 5 0 Median 1.136 1.0995 19.607 4 0 Median 0.93351 1.0793 12.043 2 0 Median 1.2084 1.0604 17.552 3 0 Median 1.2456 1.3887 18.065 2 0 Median 1.2537 1.2933 27.912 2 0 Median 250690000 124830000 125850000 186800000 96587000 90210000 25736000 11398000 14339000 22063000 9929700 12134000 2155800 928950 1226900 12434000 5309800 7124400 1499000 679840 819150 17597 1948 18341 91475;91476;91477;91478;91479;91480;91481;91482;91483;91484;91485;91486;91487;91488;91489;91490;91491;91492 93165;93166;93167;93168;93169;93170;93171;93172;93173;93174;93175;93176;93177;93178;93179;93180;93181;93182 93173 18 KKEPEPNFQLLDNPAR KMEVDEAEKKEEKEKKKEPEPNFQLLDNPA KEPEPNFQLLDNPARVMPAQLKVLTMPETC K K K A R V 1 1 2 1 0 1 2 0 0 0 2 2 0 1 3 0 0 0 0 0 0 0 16 2 1894.9901 A0A087WW66;Q99460 A0A087WW66 868 883 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 3.3271E-05 71.08 By MS/MS By matching 1 2 0.58389 0.66367 30.833 3 Median 0.58389 0.66367 NaN 1 0 Median 0.69584 0.71253 43.217 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17049000 10986000 6063300 14500000 9356800 5142800 2549300 1628800 920510 0 0 0 0 0 0 0 0 0 0 0 0 17598 54 18342 91493;91494;91495 93183;93184 93183 2 KKEPLTQAVGLSTQAEGTR ATVNVALNMLGELDKKKEPLTQAVGLSTQA LTQAVGLSTQAEGTRTLKSLLMFTMENCFY K K K T R T 2 1 0 0 0 2 2 2 0 0 2 2 0 0 1 1 3 0 0 1 0 0 19 2 2013.0855 Q5SRE5 Q5SRE5 1627 1645 NUP188 Nucleoporin NUP188 homolog yes yes 4 0.019513 25.995 By MS/MS 1 0.47755 0.63093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47755 0.63093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7763300 5089300 2674000 0 0 0 0 0 0 7763300 5089300 2674000 0 0 0 0 0 0 0 0 0 17599 3074 18343 91496 93185 93185 1 KKESDLPSAILQTSGVSEFTK KEGRDRKKDKQHLKRKKESDLPSAILQTSG PSAILQTSGVSEFTKKRSKLVLPAPQISDA R K K T K K 1 0 0 1 0 1 2 1 0 1 2 3 0 1 1 4 2 0 0 1 0 0 21 2 2264.19 Q99459 Q99459 270 290 CDC5L Cell division cycle 5-like protein yes yes 3 1.949E-06 41.521 By MS/MS By matching 1 1 0.92787 1.0682 1.0033 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86951 1.0607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99015 1.0758 NaN 1 0 Median 3118800 1716600 1402200 0 0 0 0 0 0 2887400 1613900 1273500 0 0 0 0 0 0 231440 102780 128670 17600 3745 18344 91497;91498 93186 93186 1 KKEVPAVPETLK ______________________________ EEKKKEVPAVPETLKKKRRNFAELKIKRLR K K K L K K 1 0 0 0 0 0 2 0 0 0 1 3 0 0 2 0 1 0 0 2 0 0 12 2 1337.7919 P18124 P18124 8 19 RPL7 60S ribosomal protein L7 yes yes 3 0.00020625 64.827 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.87234 0.88426 7.4846 5 Median 0.87234 0.91125 NaN 1 0 Median 0.89026 0.88426 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89965 0.83934 12.769 2 0 Median 0.76393 0.83584 NaN 1 0 Median NaN NaN NaN 0 0 Median 24315000 12830000 11485000 8602700 4559700 4043000 3756100 2037300 1718800 0 0 0 3642300 1683000 1959200 8313900 4550400 3763500 0 0 0 17601 2056 18345 91499;91500;91501;91502;91503 93187;93188;93189;93190;93191;93192;93193;93194 93188 8 KKGTHFNFAIVFTDVK KELTSLVKEVYPEARKKGTHFNFAIVFTDV KGTHFNFAIVFTDVKRPGYRVKEIGSTMSG R K K V K R 1 0 1 1 0 0 0 1 1 1 0 3 0 3 0 0 2 0 0 2 0 0 16 2 1851.0043 O00422;H7BZW6;U3KPY7 O00422 82 97 SAP18 Histone deacetylase complex subunit SAP18 yes no 2;3;4 3.3295E-09 84.289 By MS/MS 3 1.0627 1.201 7.2278 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0627 1.201 7.2278 2 0 Median NaN NaN NaN 0 0 Median 57391000 26351000 31040000 0 0 0 0 0 0 0 0 0 0 0 0 57391000 26351000 31040000 0 0 0 17602 1253 18346 91504;91505;91506 93195;93196;93197;93198;93199;93200;93201;93202 93202 8 KKHPDASVNFSEFSK SSYAFFVQTCREEHKKKHPDASVNFSEFSK KKHPDASVNFSEFSKKCSERWKTMSAKEKG K K K S K K 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P09429;Q5T7C4 P09429 29 43 HMGB1 High mobility group protein B1 yes no 3 0.00010751 55.344 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.97272 0.95353 10.93 6 Median 0.70912 0.74888 NaN 1 0 Median 0.95044 0.93007 NaN 1 0 Median 0.88722 1.0011 NaN 1 0 Median 1.0139 0.94597 4.6485 2 0 Median NaN NaN NaN 0 0 Median 1.0653 0.99747 NaN 1 0 Median 126320000 63744000 62581000 6382900 3541100 2841800 6721800 3570600 3151200 32494000 17402000 15092000 77869000 37852000 40017000 0 0 0 2857300 1378100 1479200 17603 1915 18347 91507;91508;91509;91510;91511;91512 93203;93204;93205;93206;93207;93208;93209;93210 93206 8 KKHPDSSVNFAEFSK SSYAFFVQTCREEHKKKHPDSSVNFAEFSK KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K K K S K K 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P26583;D6R9A6 P26583 29 43 HMGB2 High mobility group protein B2 yes no 3 9.611E-10 99.927 By MS/MS By MS/MS 1 1 0.97075 0.98878 1.7474 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88722 1.0011 NaN 1 0 Median 1.0622 0.97664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65085000 32529000 32556000 0 0 0 0 0 0 32494000 17402000 15092000 32591000 15127000 17464000 0 0 0 0 0 0 17604 2146 18348 91513;91514 93211;93212;93213 93213 3 KKIEQQGGFTFENK VYTLAEHRRTVAEAKKKIEQQGGFTFENKG KKKIEQQGGFTFENKGVLSAFNFGTVPSNN K K K N K G 0 0 1 0 0 2 2 2 0 1 0 3 0 2 0 0 1 0 0 0 0 0 14 2 1652.8522 O15397 O15397 1009 1022 IPO8 Importin-8 yes yes 3 0.036997 18.413 By MS/MS 1 1.0313 1.081 NaN 1 Median 1.0313 1.081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2734300 1176100 1558200 2734300 1176100 1558200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17605 1545 18349 91515 93214 93214 1 KKIPDPDSDDVSEVDAR QPQAAQPPTLPVEEKKKIPDPDSDDVSEVD IPDPDSDDVSEVDARHIIENAKQDVDDEYG K K K A R H 1 1 0 5 0 0 1 0 0 1 0 2 0 0 2 2 0 0 0 2 0 0 17 2 1884.9065 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y7R0;A0A2R8Y583 P51532 688 704 SMARCA4 Transcription activator BRG1 yes no 3 7.0949E-06 65.949 By MS/MS 1 0.45162 0.59667 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45162 0.59667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8437800 5788300 2649500 0 0 0 0 0 0 8437800 5788300 2649500 0 0 0 0 0 0 0 0 0 17606 366 18350 91516 93215 93215 1 KKLEGELEELK RDEERKQRTLAVAARKKLEGELEELKAQMA VAARKKLEGELEELKAQMASAGQGKEEAVK R K K L K A 0 0 0 0 0 0 4 1 0 0 3 3 0 0 0 0 0 0 0 0 0 0 11 2 1314.7395 Q7Z406;A1L2Z2 Q7Z406 1637 1647 MYH14 Myosin-14 yes no 3 0.00039904 60.255 By matching By MS/MS 1 1 0.94092 1.0558 21.319 2 Median 0.82939 0.90806 NaN 1 0 Median 1.0675 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4048400 2051300 1997100 1262900 663440 599410 2785600 1387900 1397700 0 0 0 0 0 0 0 0 0 0 0 0 17607 3242 18351 91517;91518 93216 93216 1 KKLEMDLK LEDERKQRSMAVAARKKLEMDLKDLEAHID SMAVAARKKLEMDLKDLEAHIDSANKNRDE R K K L K D 0 0 0 1 0 0 1 0 0 0 2 3 1 0 0 0 0 0 0 0 0 0 8 2 1003.5736 P35579 P35579 1613 1620 MYH9 Myosin-9 yes yes 2 0.013267 90.709 By MS/MS 2 0.72958 0.76248 68.251 2 Median NaN NaN NaN 0 0 Median 0.72958 0.76248 68.251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6403300 3221700 3181600 0 0 0 6403300 3221700 3181600 0 0 0 0 0 0 0 0 0 0 0 0 17608 2244 18352 91519;91520 93217 93217 1 KKLEQLYNR PELYIRESVKGSLDRKKLEQLYNRYKDPQD KGSLDRKKLEQLYNRYKDPQDENKIGIDGI R K K N R Y 0 1 1 0 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 2 1190.6772 Q96GG9;C9JVE2;C9JRU6;C9J0B2;C9J8R4 Q96GG9 63 71 DCUN1D1 DCN1-like protein 1;DCN1-like protein yes no 2 0.029604 50.607 By MS/MS By matching 1 1 1.0081 0.96879 6.9142 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90863 1.0173 NaN 1 0 Median 1.1185 0.92256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3190000 1497200 1692800 0 0 0 0 0 0 2774100 1298600 1475500 415860 198630 217220 0 0 0 0 0 0 17609 3657 18353 91521;91522 93218 93218 1 KKLVIVGDGACGK ______________________________ IRKKLVIVGDGACGKTCLLIVFSKDQFPEV R K K G K T 1 0 0 1 1 0 0 3 0 1 1 3 0 0 0 0 0 0 0 2 0 0 13 2 1343.7595 P61586;Q5JR08;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q5JR06;E9PN11;U3KQA9;U3KQV3;E9PLA2;C9JRM1 P61586 6 18 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 3 0.035792 20.124 By matching By MS/MS 1 1 1.11 1.0973 35.601 2 Median 0.78772 0.85306 NaN 1 0 Median 1.5641 1.4114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 739120 368630 370490 88656 51239 37417 650460 317390 333070 0 0 0 0 0 0 0 0 0 0 0 0 17610 2559 18354 91523;91524 93219 93219 1 KKNEGVNWLR KNVECARVYAENAIRKKNEGVNWLRMASRV ENAIRKKNEGVNWLRMASRVDAVASKVQTA R K K L R M 0 1 2 0 0 0 1 1 0 0 1 2 0 0 0 0 0 1 0 1 0 0 10 2 1242.6833 F8VUA2;F8VVT7;Q9HD42 F8VUA2 55 64 CHMP1A Charged multivesicular body protein 1a yes no 3 0.0059819 37.717 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1735 1.1174 13.529 5 Median NaN NaN NaN 0 0 Median 1.1089 0.96146 NaN 1 0 Median 1.1901 1.3325 NaN 1 0 Median 1.1735 0.968 NaN 1 0 Median 0.97185 1.1474 NaN 1 0 Median 1.1913 1.1174 NaN 1 0 Median 21481000 9824300 11657000 0 0 0 1477100 645780 831330 6489600 2964700 3524900 3426600 1394400 2032200 9174100 4417400 4756700 913570 402110 511460 17611 1066 18355 91525;91526;91527;91528;91529 93220;93221;93222;93223;93224;93225;93226 93225 7 KKNGPLEVAGAAVSAGHGLPAK KKGGKEFVEAVLELRKKNGPLEVAGAAVSA VAGAAVSAGHGLPAKFVIHCNSPVWGADKC R K K A K F 5 0 1 0 0 0 1 4 1 0 2 3 0 0 2 1 0 0 0 2 0 0 22 2 2071.1538 O75367;B4DJC3 O75367 250 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 4 0.0092109 21.129 By MS/MS 2 0.70484 0.76948 9.9047 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70484 0.76948 9.9047 2 0 Median NaN NaN NaN 0 0 Median 17802000 8542700 9258800 0 0 0 0 0 0 0 0 0 0 0 0 17802000 8542700 9258800 0 0 0 17612 1662 18356 91530;91531 93227;93228 93228 2 KKNLQYYDISAK IKDRKVKAKSIVFHRKKNLQYYDISAKSNY FHRKKNLQYYDISAKSNYNFEKPFLWLARK R K K A K S 1 0 1 1 0 1 0 0 0 1 1 3 0 0 0 1 0 0 2 0 0 0 12 2 1469.7878 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 158 169 RAN GTP-binding nuclear protein Ran yes no 2;3 1.2285E-05 110.66 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.2399 1.2773 14.442 7 Median 1.2399 1.3094 NaN 1 0 Median 1.1978 1.1721 NaN 1 0 Median 1.132 1.2773 NaN 1 0 Median 1.2449 1.1447 4.4904 2 0 Median 1.3972 1.5287 16.554 2 0 Median NaN NaN NaN 0 0 Median 102550000 45808000 56744000 15707000 7057600 8649800 10231000 4380300 5850500 24586000 11160000 13426000 31386000 14130000 17256000 20641000 9080300 11561000 0 0 0 17613 623 18357 91532;91533;91534;91535;91536;91537;91538 93229;93230;93231;93232;93233;93234;93235;93236;93237 93237 9 KKNPEVPVNFAEFSK SAYAFFVQTCREEHKKKNPEVPVNFAEFSK KKNPEVPVNFAEFSKKCSERWKTMSGKEKS K K K S K K 1 0 2 0 0 0 2 0 0 0 0 3 0 2 2 1 0 0 0 2 0 0 15 2 1732.9148 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 29 43 HMGB3 High mobility group protein B3 yes no 3 0.00038137 42.338 By MS/MS By MS/MS 1 1 0.85857 0.87452 1.2362 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76831 0.86691 NaN 1 0 Median 0.95944 0.8822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26162000 13890000 12272000 0 0 0 0 0 0 17210000 9632700 7577100 8952600 4257600 4695000 0 0 0 0 0 0 17614 880 18358 91539;91540 93238;93239;93240 93239 3 KKPEDSPSDDDVLIVYELTPTAEQK SINYTFKTPEKAKEKKKPEDSPSDDDVLIV DVLIVYELTPTAEQKALATKLKLPPTFFCY K K K Q K A 1 0 0 4 0 1 3 0 0 1 2 3 0 0 3 2 2 0 1 2 0 0 25 2 2816.3968 P49792 P49792 2621 2645 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3;4 2.0959E-07 57.147 By MS/MS 2 0.49056 0.60906 11.834 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49056 0.60906 11.834 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7389900 4913900 2475900 0 0 0 0 0 0 7389900 4913900 2475900 0 0 0 0 0 0 0 0 0 17615 2401 18359 91541;91542 93241;93242 93242 2 KKPFMLDEEGDTQTEETQPSETK EMIFDPTMSKKKKKKKKPFMLDEEGDTQTE EGDTQTEETQPSETKEVEPEPTEDKDLEAD K K K T K E 0 0 0 2 0 2 5 1 0 0 1 3 1 1 2 1 4 0 0 0 0 0 23 2 2667.2222 P20042 P20042 20 42 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3;4 1.5839E-18 88.872 By MS/MS By MS/MS 1 4 0.89862 0.86377 45.892 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2173 1.4279 NaN 1 0 Median 0.80229 0.77118 39.856 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53037000 25214000 27823000 0 0 0 0 0 0 5607600 2197100 3410500 47429000 23017000 24413000 0 0 0 0 0 0 17616 2072 18360;18361 91543;91544;91545;91546;91547 93243;93244;93245;93246;93247 93246 835 5 KKPFVYTQGQAVLNR GPGVCWLAPEQTAGKKKPFVYTQGQAVLNR KKPFVYTQGQAVLNRAFFPCFDTPAVKYKY K K K N R A 1 1 1 0 0 2 0 1 0 0 1 2 0 1 1 0 1 0 1 2 0 0 15 2 1747.9733 Q9H4A4;A6NKB8;C9JMZ3;A0A087WU27;A0A087WUS4 Q9H4A4 162 176 RNPEP Aminopeptidase B yes no 3;4 8.3062E-10 101.32 By MS/MS By MS/MS 2 1 0.82958 0.89807 46.002 3 Median 0.55996 0.60618 55.587 2 0 Median 0.96401 0.91704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81043000 45299000 35743000 56656000 33879000 22777000 24387000 11421000 12967000 0 0 0 0 0 0 0 0 0 0 0 0 17617 3964 18362 91548;91549;91550 93248;93249;93250;93251;93252 93248 4 KKPIVTINTNSISTK KDFCSQSCLSTYELKKKPIVTINTNSISTK KKPIVTINTNSISTKCSMCQKNAVIRHEVN K K K T K C 0 0 2 0 0 0 0 0 0 3 0 3 0 0 1 2 3 0 0 1 0 0 15 2 1642.9618 Q5VZL5;H7C1I7 Q5VZL5 429 443 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.00048591 39.143 By MS/MS 1 0.70294 0.81441 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70294 0.81441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3604200 1853800 1750400 0 0 0 0 0 0 3604200 1853800 1750400 0 0 0 0 0 0 0 0 0 17618 3117 18363 91551 93253 93253 1 KKPIYINVIR HGHVSYLDFAKFGVKKKPIYINVIRDPIER KFGVKKKPIYINVIRDPIERLVSYYYFLRF K K K I R D 0 1 1 0 0 0 0 0 0 3 0 2 0 0 1 0 0 0 1 1 0 0 10 2 1242.7812 Q7LGA3;K7EP71 Q7LGA3 155 164 HS2ST1 Heparan sulfate 2-O-sulfotransferase 1 yes no 3 0.0035744 43.308 By matching By MS/MS By matching 1 1 1 0.96307 1.0762 7.1906 3 Median 0.96307 1.0762 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88954 1.032 NaN 1 0 Median 1.0875 1.1872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8631600 4175200 4456400 1555600 751820 803810 0 0 0 4367200 2223300 2144000 2708700 1200100 1508600 0 0 0 0 0 0 17619 3232 18364 91552;91553;91554 93254 93254 1 KKPLDGEYFTLQIR KRALPNNTSSSPQPKKKPLDGEYFTLQIRG KKKPLDGEYFTLQIRGRERFEMFRELNEAL K K K I R G 0 1 0 1 0 1 1 1 0 1 2 2 0 1 1 0 1 0 1 0 0 0 14 2 1706.9356 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1 A0A0U1RQC9 281 294 TP53 Cellular tumor antigen p53 yes no 2;3 0.0035707 56.569 By MS/MS By MS/MS 1 1 0.75352 0.86809 35.424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96119 1.1152 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.59072 0.67574 NaN 1 0 Median NaN NaN NaN 0 0 Median 26498000 12863000 13635000 0 0 0 0 0 0 22746000 10560000 12185000 0 0 0 3752500 2303100 1449300 0 0 0 17620 299 18365 91555;91556 93255;93256 93256 2 KKPLFITTDSSK WPESHSSADSASLAKKKPLFITTDSSKLVS LAKKKPLFITTDSSKLVSGVLGSALTSGGP K K K S K L 0 0 0 1 0 0 0 0 0 1 1 3 0 1 1 2 2 0 0 0 0 0 12 2 1363.7711 Q7LBC6 Q7LBC6 689 700 KDM3B Lysine-specific demethylase 3B yes yes 3 0.0047905 35.204 By MS/MS By matching By MS/MS 1 2 1 0.8274 0.87371 6.8034 4 Median 0.79735 0.87299 NaN 1 0 Median 0.87487 0.91431 10.872 2 0 Median 0.75474 0.87442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4373300 2518900 1854500 1249000 662390 586590 2456300 1484000 972360 668010 372500 295510 0 0 0 0 0 0 0 0 0 17621 3230 18366 91557;91558;91559;91560 93257;93258;93259 93257 3 KKPNPVEEEPSR ASGDEGIKVLKQRAKKKPNPVEEEPSRRRP RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K K S R R 0 1 1 0 0 0 3 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 12 2 1408.731 P46013 P46013 2652 2663 MKI67 Antigen KI-67 yes yes 3 0.036095 20.84 By MS/MS By matching By matching By matching 4 3 2 1 0.60318 0.69893 11.267 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61367 0.73 10.219 4 0 Linear 0.6037 0.67571 11.162 3 0 Median 0.61682 0.72601 2.1459 2 0 Median 0.60267 0.57847 NaN 1 0 Median 3250700 1970500 1280200 0 0 0 0 0 0 1890300 1170900 719420 518190 309070 209120 740390 435630 304760 101840 54922 46918 17622 2335 18367 91561;91562;91563;91564;91565;91566;91567;91568;91569;91570 93260;93261 93261 2 KKPSMPNVSNDLSQK KKTNKNKSSISRANKKKPSMPNVSNDLSQK KKPSMPNVSNDLSQKLYATMEKHKEVFFVI K K K Q K L 0 0 2 1 0 1 0 0 0 0 1 3 1 0 2 3 0 0 0 1 0 0 15 2 1671.8614 Q92793 Q92793 1606 1620 CREBBP CREB-binding protein yes yes 3 0.0097874 25.319 By MS/MS 1 1.0108 1.0245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0108 1.0245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1643100 846500 796590 0 0 0 0 0 0 0 0 0 1643100 846500 796590 0 0 0 0 0 0 17623 3557 18368 91571 93262;93263 93263 2 KKPYTMDPDHR FYESDDDQKEKTDKKKKPYTMDPDHRLLIR TDKKKKPYTMDPDHRLLIRNTKPLLQSRNA K K K H R L 0 1 0 2 0 0 0 0 1 0 0 2 1 0 2 0 1 0 1 0 0 0 11 2 1386.6714 O00203 O00203 288 298 AP3B1 AP-3 complex subunit beta-1 yes yes 3 0.061414 15.202 By MS/MS 1 0.77681 0.76959 NaN 1 Median NaN NaN NaN 0 0 Median 0.77681 0.76959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 471130 211480 259650 0 0 0 471130 211480 259650 0 0 0 0 0 0 0 0 0 0 0 0 17624 1447 18369 91572 93264 93264 1 KKQEAEENEITEK QKEKLRKEEQEQKAKKKQEAEENEITEKQQ AKKKQEAEENEITEKQQKAKEEMEKKESEQ K K K E K Q 1 0 1 0 0 1 5 0 0 1 0 3 0 0 0 0 1 0 0 0 0 0 13 2 1574.7788 P40818 P40818 505 517 USP8 Ubiquitin carboxyl-terminal hydrolase 8 yes yes 3 0.038896 19.323 By MS/MS 1 0.95504 0.90704 NaN 1 Median NaN NaN NaN 0 0 Median 0.95504 0.90704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1048300 547780 500500 0 0 0 1048300 547780 500500 0 0 0 0 0 0 0 0 0 0 0 0 17625 2290 18370 91573 93265;93266 93266 2 KKQEQLTPGVVYVR FQKEVAQVRKRITQRKKQEQLTPGVVYVRH RKKQEQLTPGVVYVRHLPNLLDETQIFSYF R K K V R H 0 1 0 0 0 2 1 1 0 0 1 2 0 0 1 0 1 0 1 3 0 0 14 2 1643.9359 Q9BYG3 Q9BYG3 37 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2;3;4 0.00022124 64.104 By MS/MS By MS/MS 4 2 0.96952 1.0413 9.0375 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88769 1.0413 8.9334 4 0 Median 1.1201 1.0322 12.883 2 0 Median 79044000 39956000 39088000 0 0 0 0 0 0 0 0 0 0 0 0 71728000 36648000 35080000 7315800 3308400 4007400 17626 3891 18371 91574;91575;91576;91577;91578;91579 93267;93268;93269;93270;93271;93272;93273;93274;93275;93276;93277 93267 11 KKQGIVTPIEAQTR MLQAMGWKEGSGLGRKKQGIVTPIEAQTRV RKKQGIVTPIEAQTRVRGSGLGARGSSYGV R K K T R V 1 1 0 0 0 2 1 1 0 2 0 2 0 0 1 0 2 0 0 1 0 0 14 2 1567.9046 P98175 P98175 880 893 RBM10 RNA-binding protein 10 yes yes 3 0.037169 18.364 By MS/MS 1 0.80329 0.91533 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80329 0.91533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2195700 1130400 1065300 0 0 0 0 0 0 2195700 1130400 1065300 0 0 0 0 0 0 0 0 0 17627 2671 18372 91580 93278 93278 1 KKQLAEQEELER PPPHKEARQRRKELRKKQLAEQEELERQMK ELRKKQLAEQEELERQMKELQAANESKQQE R K K E R Q 1 1 0 0 0 2 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 2 1499.7944 Q9UH65;E7EMB1;E9PJM7 Q9UH65 328 339 SWAP70 Switch-associated protein 70 yes no 3 0.0083054 30.438 By MS/MS 1 0.68138 0.73763 NaN 1 Median 0.68138 0.73763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1272800 599140 673620 1272800 599140 673620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17628 4270 18373 91581 93279;93280;93281 93280 3 KKTNLVWDEVSGQWR TRWQQFARLKGIRPKKKTNLVWDEVSGQWR KKTNLVWDEVSGQWRRRWGYQRARDDTKEW K K K W R R 0 1 1 1 0 1 1 1 0 0 1 2 0 0 0 1 1 2 0 2 0 0 15 2 1844.9533 Q15050 Q15050 127 141 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 0.008954 25.59 By MS/MS By matching 2 1 0.82917 1.018 16.332 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83683 0.9663 14.106 2 0 Median 0.82917 0.77238 NaN 1 0 Median 9768500 5354700 4413800 0 0 0 0 0 0 0 0 0 0 0 0 9242700 5061300 4181400 525750 293400 232360 17629 2920 18374 91582;91583;91584 93282 93282 1 KKTQAEIEQEMATLQYTNPQLLEQLK EVLNDRKEDIKLEEKKKTQAEIEQEMATLQ ATLQYTNPQLLEQLKIERLAQKQVEQIQPP K K K L K I 2 0 1 0 0 5 4 0 0 1 4 3 1 0 1 0 3 0 1 0 0 0 26 2 3074.5958 Q9C0J8 Q9C0J8 535 560 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 3.4324E-19 63.138 By MS/MS 1 0.75118 0.90265 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75118 0.90265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8687100 4836300 3850800 0 0 0 0 0 0 8687100 4836300 3850800 0 0 0 0 0 0 0 0 0 17630 3907 18375 91585 93283;93284 93284 2 KKVDDDLGTIESLEEAK EKQVLALQSQLADTKKKVDDDLGTIESLEE VDDDLGTIESLEEAKKKLLKDAEALSQRLE K K K A K K 1 0 0 3 0 0 3 1 0 1 2 3 0 0 0 1 1 0 0 1 0 0 17 2 1888.963 P35580 P35580 1378 1394 MYH10 Myosin-10 yes yes 3 1.8307E-11 97.904 By MS/MS By MS/MS By MS/MS 1 1 1 1.0233 1.1203 40.056 3 Median 1.0233 1.1203 NaN 1 0 Median 1.1765 1.353 NaN 1 0 Median 0.54147 0.62733 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33307000 18237000 15070000 16606000 8376600 8229800 4351800 1958100 2393600 12349000 7901800 4447000 0 0 0 0 0 0 0 0 0 17631 2245 18376 91586;91587;91588 93285;93286;93287;93288 93286 4 KKVEAQLQELQVK VKVLLQGKGDSEHKRKKVEAQLQELQVKFN KRKKVEAQLQELQVKFNEGERVRTELADKV R K K V K F 1 0 0 0 0 3 2 0 0 0 2 3 0 0 0 0 0 0 0 2 0 0 13 2 1539.8984 P35579 P35579 1248 1260 MYH9 Myosin-9 yes yes 2;3 2.3275E-09 172.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 3 2 1.1561 1.2343 20.535 18 Median 1.1943 1.3076 36.502 4 0 Median 1.0693 1.1176 9.8921 5 0 Median 1.0742 1.2675 15.65 2 0 Median 1.416 1.4426 11.436 2 0 Median 1.1989 1.3862 8.9375 3 0 Median 1.132 1.1982 3.1945 2 0 Median 405780000 185500000 220270000 168470000 75345000 93123000 152200000 71106000 81090000 33002000 16140000 16862000 7222500 2913200 4309300 29371000 12915000 16456000 15516000 7082100 8433500 17632 2244 18377 91589;91590;91591;91592;91593;91594;91595;91596;91597;91598;91599;91600;91601;91602;91603;91604;91605;91606 93289;93290;93291;93292;93293;93294;93295;93296;93297;93298;93299;93300;93301;93302;93303;93304;93305;93306;93307;93308;93309;93310;93311 93294 23 KKVEHEISEGNVATAAAAALASAATK ELTDTCKERESDTGKKKVEHEISEGNVATA VATAAAAALASAATKAKHLAAVEERKIKSL K K K T K A 9 0 1 0 0 0 3 1 1 1 1 3 0 0 0 2 2 0 0 2 0 0 26 2 2537.3449 Q92922 Q92922 855 880 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 4 0.056142 8.7335 By MS/MS 1 1.1004 1.3223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1004 1.3223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3196500 1709000 1487500 0 0 0 0 0 0 3196500 1709000 1487500 0 0 0 0 0 0 0 0 0 17633 3567 18378 91607 93312 93312 1 KKVPVSVNLLSK RRLLPSLIGRHFYQRKKVPVSVNLLSKNLS YQRKKVPVSVNLLSKNLSREINDCIGGTVL R K K S K N 0 0 1 0 0 0 0 0 0 0 2 3 0 0 1 2 0 0 0 3 0 0 12 2 1310.8286 O76021;J3QSV6;I3L3C4 O76021 177 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 1.7963E-06 98.902 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 10 7 1.004 1.0849 19.231 20 Median NaN NaN NaN 0 0 Median 1.0987 1.0549 NaN 1 0 Median 0.98821 1.1677 NaN 1 0 Median 2.4434 2.313 NaN 1 0 Median 0.9633 1.0932 8.924 10 0 Median 1.0593 1.0789 8.6095 7 0 Median 282460000 138310000 144150000 0 0 0 3390900 1543200 1847700 2934600 1330700 1603900 744280 282600 461680 222090000 110110000 111980000 53306000 25045000 28261000 17634 1716 18379 91608;91609;91610;91611;91612;91613;91614;91615;91616;91617;91618;91619;91620;91621;91622;91623;91624;91625;91626;91627 93313;93314;93315;93316;93317;93318;93319;93320;93321;93322;93323;93324;93325;93326;93327;93328;93329;93330;93331;93332;93333;93334;93335;93336;93337;93338;93339 93315 26 KKVTLGTQPTVLR FYFGLNIETGLLSDRKKVTLGTQPTVLRTF DRKKVTLGTQPTVLRTFRSLSTTNVFACSD R K K L R T 0 1 0 0 0 1 0 1 0 0 2 2 0 0 1 0 3 0 0 2 0 0 13 2 1439.8824 Q16531;F5GY55 Q16531 627 639 DDB1 DNA damage-binding protein 1 yes no 3 0.0016011 39.016 By MS/MS 2 0.67328 0.82791 4.2553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67328 0.82791 4.2553 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5471700 3151600 2320200 0 0 0 0 0 0 5471700 3151600 2320200 0 0 0 0 0 0 0 0 0 17635 2985 18380 91628;91629 93340;93341;93342;93343 93343 4 KKWDLSELPK LPPKKFGNPGERLRKKKWDLSELPKFEKNF ERLRKKKWDLSELPKFEKNFYVEHPEVARL K K K P K F 0 0 0 1 0 0 1 0 0 0 2 3 0 0 1 1 0 1 0 0 0 0 10 2 1242.6972 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 120 129 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 0.021162 26.118 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.81738 0.90977 15.929 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78691 0.90977 NaN 1 0 Median 0.90568 0.96074 NaN 1 0 Median 0.65934 0.73507 NaN 1 0 Median 0.91241 0.94126 22.888 2 0 Median 44997000 24214000 20783000 0 0 0 0 0 0 37609000 19822000 17787000 677200 366540 310650 5496600 3428600 2068100 1214300 597080 617240 17636 343 18381 91630;91631;91632;91633;91634 93344;93345 93345 2 KKWENPGLGAESHTDSLR NLSQHFRKGTLTVLKKKWENPGLGAESHTD ENPGLGAESHTDSLRNSSTEIRHRADHPPA K K K L R N 1 1 1 1 0 0 2 2 1 0 2 2 0 0 1 2 1 1 0 0 0 0 18 2 2024.0076 Q9UHB6;F8VRN8;F8VVQ7;F8VTU2 Q9UHB6 74 91 LIMA1 LIM domain and actin-binding protein 1 yes no 4 2.8241E-05 48.053 By MS/MS 1 0.72497 0.90316 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72497 0.90316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3571800 1511100 2060700 0 0 0 0 0 0 3571800 1511100 2060700 0 0 0 0 0 0 0 0 0 17637 4273 18382 91635 93346;93347 93346 2 KKWNLDELPK LSGKKFGNPGEKLVKKKWNLDELPKFEKNF EKLVKKKWNLDELPKFEKNFYQEHPDLARR K K K P K F 0 0 1 1 0 0 1 0 0 0 2 3 0 0 1 0 0 1 0 0 0 0 10 2 1269.7081 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4;X6RLV5 J3KTA4 44 53 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.026202 24.853 By MS/MS By MS/MS By matching 1 1 2 0.85154 0.9556 25.689 4 Median 1.3721 1.4002 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92951 1.0746 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74551 0.82155 4.7749 2 0 Median NaN NaN NaN 0 0 Median 19612000 9554900 10057000 3761900 1486100 2275700 0 0 0 9792500 4850000 4942400 0 0 0 6057200 3218700 2838500 0 0 0 17638 1334 18383 91636;91637;91638;91639 93348;93349 93348 2 KKYPDYYQQIK QGQLIAEPFYHLPSKKKYPDYYQQIKMPIS LPSKKKYPDYYQQIKMPISLQQIRTKLKNQ K K K I K M 0 0 0 1 0 2 0 0 0 1 0 3 0 0 1 0 0 0 3 0 0 0 11 2 1472.7664 Q86U86;E7EVG2;H0Y5B5 Q86U86 415 425 PBRM1 Protein polybromo-1 yes no 3 0.011154 30.06 By MS/MS 1 0.67975 0.78754 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67975 0.78754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3906900 2328200 1578700 0 0 0 0 0 0 3906900 2328200 1578700 0 0 0 0 0 0 0 0 0 17639 3273 18384 91640 93350 93350 1 KKYVIYIER HYKGQQIGKVVQVYRKKYVIYIERVQREKA VVQVYRKKYVIYIERVQREKANGTTVHVGI R K K E R V 0 1 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 0 2 1 0 0 9 2 1210.7074 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KS10 P61254 76 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 3 0.011879 34.692 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2349 1.0186 22.414 5 Median 0.91368 0.97287 NaN 1 0 Median 1.1164 0.96799 NaN 1 0 Median 1.2395 1.3878 NaN 1 0 Median 1.2349 1.0186 NaN 1 0 Median 1.3223 1.5612 NaN 1 0 Median NaN NaN NaN 0 0 Median 7945100 3597600 4347600 2938700 1369400 1569300 2057300 884710 1172600 708920 323040 385880 1227700 575160 652570 1012400 445270 567170 0 0 0 17640 2554 18385 91641;91642;91643;91644;91645 93351;93352 93351 2 KLAAVTYNGVDNNK KDVTNNVHYENYRSRKLAAVTYNGVDNNKN RKLAAVTYNGVDNNKNKGQLTKSPLAQMEE R K L N K N 2 0 3 1 0 0 0 1 0 0 1 2 0 0 0 0 1 0 1 2 0 0 14 1 1505.7838 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 293 306 SEPT7 Septin-7 yes no 3 0.0062486 40.278 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17641 870 18386 91646 93353 93353 1 KLAEEEDLFDSAHPEEGDLDLASESTAHAQSSK EQPFAQDTSSVGPDRKLAEEEDLFDSAHPE LDLASESTAHAQSSKADSLLAVVKREPAEQ R K L S K A 5 0 0 4 0 1 6 1 2 0 4 2 0 1 1 5 1 0 0 0 0 0 33 1 3555.6125 Q15424;Q14151 Q15424 253 285 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 4;5 2.306E-22 72.533 By MS/MS By MS/MS By matching 2 3 1 0.67639 0.7478 15.94 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.782 0.90689 19.485 2 0 Median NaN NaN NaN 0 0 Median 0.66857 0.74857 6.4809 3 0 Plateau 0.7516 0.68426 NaN 1 0 Median 67902000 36317000 31586000 0 0 0 0 0 0 31105000 16509000 14596000 0 0 0 36522000 19665000 16857000 275010 142330 132670 17642 2951;2859 18387 91647;91648;91649;91650;91651;91652 93354;93355;93356;93357;93358;93359 93356 6 KLAELDEYLQNLNHIQR PYYKGFEDKVSIWERKLAELDEYLQNLNHI AELDEYLQNLNHIQRKWVYLEPIFGRGALP R K L Q R K 1 1 2 1 0 2 2 0 1 1 4 1 0 0 0 0 0 0 1 0 0 0 17 1 2096.1015 Q8NCM8 Q8NCM8 1331 1347 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.011545 27.526 By MS/MS By matching 1 1 1.3443 1.475 42.089 2 Median 1.0642 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.698 1.9863 NaN 1 0 Median NaN NaN NaN 0 0 Median 5923300 2545900 3377400 4663500 2091300 2572200 0 0 0 0 0 0 0 0 0 1259800 454650 805170 0 0 0 17643 3418 18388 91653;91654 93360 93360 0 KLAEQFPR GILSQLGADSLTSLRKLAEQFPRQVLDSKA DSLTSLRKLAEQFPRQVLDSKAPKPEDIDE R K L P R Q 1 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 8 1 987.55016 E9PL10;Q96K17 E9PL10 115 122 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 2 0.010581 67.032 By MS/MS By MS/MS 1 1 1.0117 1.0204 23.105 2 Median 0.8737 0.86662 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1716 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6204400 3377300 2827000 4723300 2530300 2193100 0 0 0 1481000 847060 633970 0 0 0 0 0 0 0 0 0 17644 953 18389 91655;91656 93361;93362 93362 2 KLALQLHPDR VPRSASIKDIKKAYRKLALQLHPDRNPDDP KKAYRKLALQLHPDRNPDDPQAQEKFQDLG R K L D R N 1 1 0 1 0 1 0 0 1 0 3 1 0 0 1 0 0 0 0 0 0 0 10 1 1189.6931 Q9UBS4 Q9UBS4 47 56 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 3 0.012477 42.001 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 735190 0 735190 0 0 0 0 0 0 735190 0 735190 0 0 0 0 0 0 0 0 0 17645 4246 18390 91657 93363 93363 1 KLALQLHPDRNPDDPQAQEK VPRSASIKDIKKAYRKLALQLHPDRNPDDP LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE R K L E K F 2 1 1 3 0 3 1 0 1 0 3 2 0 0 3 0 0 0 0 0 0 0 20 2 2312.1873 Q9UBS4 Q9UBS4 47 66 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 4 0.0026803 25.888 By matching By MS/MS By MS/MS 1 1 1 0.87238 0.9567 19.393 3 Median NaN NaN NaN 0 0 Median 0.87238 1.0428 NaN 1 0 Median 0.64208 0.71986 NaN 1 0 Median 0.9564 0.9567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49043000 28126000 20917000 0 0 0 2015400 871090 1144300 38166000 22979000 15187000 8861700 4276400 4585300 0 0 0 0 0 0 17646 4246 18391 91658;91659;91660 93364;93365;93366;93367 93364 4 KLANLINAEER TKKGCKRYWTKTIEKKLANLINAEERRDVS TIEKKLANLINAEERRDVSLKDCMRRLFYN K K L E R R 2 1 2 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1269.7041 P52701;A0A494C0M1;A0A087WWJ1 P52701 1014 1024 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 0.00024376 61.344 By MS/MS By MS/MS By matching 2 2 1 0.81003 0.81969 91.928 5 Median 0.80452 0.81471 0.86046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4782 1.427 14.023 2 0 Median 0.14125 0.15319 NaN 1 0 Median NaN NaN NaN 0 0 Median 14018000 7550500 6467700 7423100 3615500 3807500 0 0 0 0 0 0 3796900 1572300 2224700 2798100 2362700 435450 0 0 0 17647 2453 18392 91661;91662;91663;91664;91665 93368;93369;93370;93371 93370 4 KLANLINAEERR TKKGCKRYWTKTIEKKLANLINAEERRDVS IEKKLANLINAEERRDVSLKDCMRRLFYNF K K L R R D 2 2 2 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 2 1425.8052 P52701;A0A494C0M1;A0A087WWJ1 P52701 1014 1025 MSH6 DNA mismatch repair protein Msh6 yes no 3 5.1916E-05 87.363 By MS/MS By MS/MS 1 1 0.85637 0.91844 10.794 2 Median 0.83401 0.85095 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87932 0.99128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6832900 3329900 3503000 2806100 1406400 1399600 0 0 0 4026800 1923400 2103400 0 0 0 0 0 0 0 0 0 17648 2453 18393 91666;91667 93372;93373;93374 93373 3 KLAPPLVTLLSAEPELQYVALR EMLSKDLDYYGTLLKKLAPPLVTLLSAEPE TLLSAEPELQYVALRNINLIVQKRPEILKH K K L L R N 3 1 0 0 0 1 2 0 0 0 6 1 0 0 3 1 1 0 1 2 0 0 22 1 2420.4043 Q10567;C9J1E7 Q10567 283 304 AP1B1 AP-1 complex subunit beta-1 yes no 3 0.073391 2.7236 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.66634 0.7594 24.805 5 Median 0.59054 0.60574 14.116 2 0 Median 0.78 0.78328 NaN 1 0 Median 0.66634 0.7594 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96867 1.0799 NaN 1 0 Median NaN NaN NaN 0 0 Median 4728300 2622400 2106000 2357900 1329000 1028900 686720 355730 330990 1318300 766020 552250 0 0 0 365490 171670 193810 0 0 0 17649 2752 18394 91668;91669;91670;91671;91672 93375;93376;93377 93375 3 KLAPPLVTLLSGEPEVQYVALR ELLPKDSDYYNMLLKKLAPPLVTLLSGEPE TLLSGEPEVQYVALRNINLIVQKRPEILKQ K K L L R N 2 1 0 0 0 1 2 1 0 0 5 1 0 0 3 1 1 0 1 3 0 0 22 1 2392.373 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 245 266 AP2B1 AP-2 complex subunit beta yes no 3 0.071994 3.3357 By MS/MS By matching By matching 1 1 1 0.68123 0.73989 24.307 3 Plateau 0.58465 0.60439 NaN 1 0 Median 0.58324 0.58583 NaN 1 0 Median 0.79377 0.90576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2439000 1512600 926400 819520 533970 285550 618190 362920 255270 1001300 615700 385580 0 0 0 0 0 0 0 0 0 17650 128 18395 91673;91674;91675 93378;93379 93379 2 KLAQQYYLVYQEPIPTAQLVQR SGMGPDYRVLVHRARKLAQQYYLVYQEPIP LVYQEPIPTAQLVQRVASVMQEYTQSGGVR R K L Q R V 2 1 0 0 0 5 1 0 0 1 3 1 0 0 2 0 1 0 3 2 0 0 22 1 2648.4326 A0A024RA52;P25787;C9JCK5 A0A024RA52 92 113 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 3 2.0229E-26 127.32 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.84062 0.82913 19.543 7 Median 0.82005 0.82869 0.075117 2 0 Median 0.85857 0.77506 15.903 2 0 Median NaN NaN NaN 0 0 Median 1.0717 0.94864 NaN 1 0 Median 0.59082 0.62198 NaN 1 0 Median 1.2328 1.1267 NaN 1 0 Median 125660000 68520000 57142000 115590000 63207000 52385000 8526700 4481000 4045700 0 0 0 195650 86101 109550 1208000 672050 535920 140250 73933 66315 17651 7 18396 91676;91677;91678;91679;91680;91681;91682 93380;93381;93382;93383 93380 4 KLASASLLDTDKR GEDGEGDFLVVGSIRKLASASLLDTDKRYC IRKLASASLLDTDKRYCGKTTSRKAWNEDH R K L K R Y 2 1 0 2 0 0 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 13 2 1416.7936 Q9NY61 Q9NY61 58 70 AATF Protein AATF yes yes 3 0.00010813 76.759 By matching By matching By MS/MS By matching 1 1 1 1 1.0692 1.1593 4.708 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97567 1.1127 NaN 1 0 Median 1.0813 1.1558 NaN 1 0 Median 1.0572 1.2459 NaN 1 0 Median 1.1335 1.1629 NaN 1 0 Median 8741100 4069300 4671800 0 0 0 0 0 0 1937100 847230 1089800 326820 144020 182800 5786900 2743800 3043100 690310 334220 356090 17652 4172 18397 91683;91684;91685;91686 93384;93385 93384 2 KLASQADSTEQVDDTILT ASLEVLNEVNRRSLKKLASQADSTEQVDDT SQADSTEQVDDTILT_______________ K K L L T - 2 0 0 3 0 2 1 0 0 1 2 1 0 0 0 2 3 0 0 1 0 0 18 1 1933.948 Q92616 Q92616 2654 2671 GCN1L1 Translational activator GCN1 yes yes 2 0.019636 35.204 By MS/MS 2 1.0741 1.0311 12.392 2 Median 1.0741 1.0311 12.392 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10530000 5109100 5421100 10530000 5109100 5421100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17653 3544 18398 91687;91688 93386;93387 93387 2 KLASQGDSISSQLGPIHPPPR GQKRQLEDGDQPESKKLASQGDSISSQLGP DSISSQLGPIHPPPRTSMTEEYRVPDGMVG K K L P R T 1 1 0 1 0 2 0 2 1 2 2 1 0 0 4 4 0 0 0 0 0 0 21 1 2184.1651 Q92945;A0A087WTP3;M0R0I5 Q92945 122 142 KHSRP Far upstream element-binding protein 2 yes no 3;4 1.2202E-93 243.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 6 3 3 0.62963 0.62275 26.833 21 Median 1.2693 1.3047 13.944 2 2 Median NaN NaN NaN 0 0 Median 0.50712 0.57501 8.9801 7 3 Median 0.70393 0.65196 19.508 6 0 Median 0.62963 0.69267 6.7448 3 0 Median 0.62501 0.62164 12.216 3 0 Median 938780000 594770000 344010000 37541000 16831000 20710000 0 0 0 752110000 491010000 261090000 110960000 64132000 46830000 32807000 19616000 13191000 5362100 3175400 2186600 17654 3568 18399 91689;91690;91691;91692;91693;91694;91695;91696;91697;91698;91699;91700;91701;91702;91703;91704;91705;91706;91707;91708;91709 93388;93389;93390;93391;93392;93393;93394;93395;93396;93397;93398;93399;93400;93401;93402;93403;93404;93405;93406;93407;93408;93409;93410;93411;93412;93413;93414;93415;93416;93417;93418;93419;93420;93421 93394 34 KLAVNMVPFPR TTCLRFPGQLNADLRKLAVNMVPFPRLHFF ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG R K L P R L 1 1 1 0 0 0 0 0 0 0 1 1 1 1 2 0 0 0 0 2 0 0 11 1 1270.722 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 252 262 TUBB3;TUBB4A;TUBB;TUBB8;TUBB1;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2;3 4.0374E-05 126.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 9 4 7 6 2 0.95088 0.93572 38.605 39 Median 0.861 0.85534 64.414 11 2 Median 0.93284 0.8523 11.249 9 0 Median 0.88331 0.94051 11.483 4 0 Median 1.0506 0.98585 7.4111 7 0 Median 1.3759 1.4322 19.129 6 0 Median 1.0224 0.92522 6.1101 2 0 Median 558750000 297160000 261590000 393840000 215710000 178130000 45618000 23587000 22031000 50597000 26075000 24522000 40153000 19446000 20706000 18771000 7923000 10848000 9768100 4416300 5351800 17655 2634;1887;3849;2844;1849;3838;216 18400;18401 91710;91711;91712;91713;91714;91715;91716;91717;91718;91719;91720;91721;91722;91723;91724;91725;91726;91727;91728;91729;91730;91731;91732;91733;91734;91735;91736;91737;91738;91739;91740;91741;91742;91743;91744;91745;91746;91747;91748 93422;93423;93424;93425;93426;93427;93428;93429;93430;93431;93432;93433;93434;93435;93436;93437;93438;93439;93440;93441;93442;93443;93444;93445;93446;93447;93448;93449;93450;93451;93452;93453;93454;93455;93456;93457;93458;93459;93460 93446 90 39 KLAYQVLAEK PKIVGRTKDVKEAVRKLAYQVLAEKVHMRA KEAVRKLAYQVLAEKVHMRAMSIAQRVMLL R K L E K V 2 0 0 0 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 10 1 1161.6758 Q9BPX3 Q9BPX3 226 235 NCAPG Condensin complex subunit 3 yes yes 2 0.0023776 63.426 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0956 1.0167 15.449 4 Median 1.2518 1.3177 NaN 1 0 Median 0.99652 0.9308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0214 0.97296 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1753 1.0624 NaN 1 0 Median 12256000 5732400 6523900 4752700 1860000 2892600 2700600 1516500 1184100 0 0 0 3499100 1783500 1715600 0 0 0 1303900 572340 731570 17656 3778 18402 91749;91750;91751;91752 93461;93462;93463 93463 3 KLAYVAAGDLAPINAFIGGLAAQEVMK LPAVQQNNLDEDLIRKLAYVAAGDLAPINA INAFIGGLAAQEVMKACSGKFMPIMQWLYF R K L M K A 7 0 1 1 0 1 1 3 0 2 3 2 1 1 1 0 0 0 1 2 0 0 27 1 2730.4779 P22314 P22314 385 411 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 0.026575 12.346 By MS/MS By MS/MS 3 3 1.0408 1.0327 15.335 6 Median 0.87114 0.92033 11.808 3 0 Median 1.2416 1.1992 5.5244 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7735800 3663400 4072400 5391100 2715900 2675300 2344600 947480 1397100 0 0 0 0 0 0 0 0 0 0 0 0 17657 2100 18403 91753;91754;91755;91756;91757;91758 93464;93465;93466 93464 3 KLDAEDVIGSR GEGKGTKAFKQPAKRKLDAEDVIGSRRQPR PAKRKLDAEDVIGSRRQPRAPKEKAQPLED R K L S R R 1 1 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 11 1 1201.6303 P46013 P46013 2892 2902 MKI67 Antigen KI-67 yes yes 2;3 0.00014738 87.568 By MS/MS By MS/MS By MS/MS By matching 3 6 3 3 1.1267 1.1427 18.869 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0947 1.2693 18.333 3 0 Median 1.0846 1.0471 13.767 6 0 Median 1.0103 1.1427 17.745 3 0 Median 1.2632 1.0998 21.854 3 0 Median 66163000 30737000 35426000 0 0 0 0 0 0 47875000 22065000 25810000 7493700 3602900 3890800 8061500 3887400 4174100 2732700 1181400 1551300 17658 2335 18404 91759;91760;91761;91762;91763;91764;91765;91766;91767;91768;91769;91770;91771;91772;91773 93467;93468;93469;93470;93471;93472;93473;93474;93475;93476 93469 10 KLDAGNQLALIEELHK VVLEESWDALNAITKKLDAGNQLALIEELH LDAGNQLALIEELHKEIRLIGNESKGEHVP K K L H K E 2 0 1 1 0 1 2 1 1 1 4 2 0 0 0 0 0 0 0 0 0 0 16 1 1790.989 Q92616 Q92616 2222 2237 GCN1L1 Translational activator GCN1 yes yes 3 6.8175E-06 82.663 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0528 1.0916 49.94 4 Median 1.1252 1.0682 NaN 1 0 Median 1.1524 1.1154 NaN 1 0 Median 0.98502 1.1371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38825 0.40811 NaN 1 0 Median NaN NaN NaN 0 0 Median 31233000 15139000 16093000 21796000 10076000 11720000 2718500 1293000 1425500 5107800 2929000 2178800 0 0 0 1610200 841090 769090 0 0 0 17659 3544 18405 91774;91775;91776;91777 93477;93478;93479;93480 93477 4 KLDAQVQELHAK KVLQQVKAESEHKRKKLDAQVQELHAKVSE KRKKLDAQVQELHAKVSEGDRLRVELAEKA K K L A K V 2 0 0 1 0 2 1 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1378.7569 P35580 P35580 1256 1267 MYH10 Myosin-10 yes yes 2;3 8.0144E-05 81.676 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1 2 1.1449 1.1113 20.246 9 Median 1.2458 1.2503 16.669 2 0 Median 1.2004 1.1385 8.2207 2 0 Median 0.73372 0.84673 NaN 1 1 Median 1.4317 1.3351 NaN 1 0 Median 0.72732 0.77826 NaN 1 0 Median 1.1512 1.0361 17.361 2 0 Median 33887000 16430000 17457000 8030600 3965300 4065300 11085000 4914300 6170500 4682300 2871400 1811000 768320 305790 462530 3938500 2192300 1746200 5382800 2181100 3201700 17660 2245 18406 91778;91779;91780;91781;91782;91783;91784;91785;91786 93481;93482;93483;93484;93485;93486;93487;93488;93489;93490 93489 10 KLDASILEDR GKGKSKGKGVGSARKKLDASILEDRDKPYA GSARKKLDASILEDRDKPYACDICGKRYKN K K L D R D 1 1 0 2 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1158.6245 Q92785;J3KMZ8 Q92785 196 205 DPF2 Zinc finger protein ubi-d4 yes no 2 0.00057756 76.943 By MS/MS By MS/MS 1 1 1.0745 1.0591 23.117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88776 0.89939 NaN 1 0 Median 1.3004 1.2472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11526000 5687300 5838300 0 0 0 0 0 0 6941600 3703600 3238000 4584100 1983700 2600400 0 0 0 0 0 0 17661 1299 18407 91787;91788 93491;93492 93492 2 KLDDFVETGDIR ILKAAKRFQINIYVKKLDDFVETGDIRTMV YVKKLDDFVETGDIRTMVFPVMYLNESVHI K K L I R T 0 1 0 3 0 0 1 1 0 1 1 1 0 1 0 0 1 0 0 1 0 0 12 1 1406.7042 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PRF6 A0A1W2PPU6 351 362 SCARB2 Lysosome membrane protein 2 yes no 2;3 1.0836E-05 121.36 By MS/MS By matching By matching By matching 4 1 1 1 1.0669 0.88014 79.751 7 Median 2.1916 2.2524 84.655 4 1 Median 1.0208 0.83723 NaN 1 0 Median 0.90442 0.88014 NaN 1 0 Median 1.0669 0.87559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129390000 50713000 78673000 69061000 21289000 47772000 55708000 26980000 28728000 3992100 2131000 1861000 624710 312990 311720 0 0 0 0 0 0 17662 340 18408 91789;91790;91791;91792;91793;91794;91795 93493;93494;93495 93493 3 KLDDSYSEAVR TEVRELKDLLTELQKKLDDSYSEAVRQNEE ELQKKLDDSYSEAVRQNEELNLLKAQLNET K K L V R Q 1 1 0 2 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 11 1 1281.6201 Q86UP2 Q86UP2 1240 1250 KTN1 Kinectin yes yes 2 0.0060914 62.303 By MS/MS 1 1.3127 1.2396 NaN 1 Median NaN NaN NaN 0 0 Median 1.3127 1.2396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2804000 1237000 1567000 0 0 0 2804000 1237000 1567000 0 0 0 0 0 0 0 0 0 0 0 0 17663 3280 18409 91796 93496 93496 1 KLDEAVAEAHLGK THPDKYPVGVHFLPKKLDEAVAEAHLGKLN PKKLDEAVAEAHLGKLNVKLTKLTEKQAQY K K L G K L 3 0 0 1 0 0 2 1 1 0 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1379.7409 P23526 P23526 389 401 AHCY Adenosylhomocysteinase yes yes 2;3 3.2578E-05 86.014 By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 9 2 1 1 1.1808 1.1245 11.41 18 Median 1.165 1.0997 7.3426 7 2 Median 1.2754 1.149 10.934 7 2 Median 1.224 1.3038 8.8837 2 1 Median 1.3148 1.2488 NaN 1 0 Median 0.84246 0.89858 NaN 1 0 Median NaN NaN NaN 0 0 Median 256600000 110830000 145770000 118590000 52356000 66239000 91295000 37579000 53716000 27471000 12094000 15377000 17137000 7578700 9558800 2102900 1223200 879690 0 0 0 17664 2116 18410 91797;91798;91799;91800;91801;91802;91803;91804;91805;91806;91807;91808;91809;91810;91811;91812;91813;91814;91815;91816;91817;91818 93497;93498;93499;93500;93501;93502;93503;93504;93505;93506;93507;93508;93509;93510;93511;93512;93513;93514;93515;93516;93517;93518;93519;93520;93521;93522;93523;93524;93525;93526;93527 93519 31 KLDEEALLK HGKGSGKMKTERRMKKLDEEALLKKMSSSD TERRMKKLDEEALLKKMSSSDTPLGTVALL K K L L K K 1 0 0 1 0 0 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 9 1 1057.6019 O43290 O43290 749 757 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.014527 60.019 By MS/MS By MS/MS By matching 1 1 1 1.0812 0.97092 5.6217 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0606 1.0103 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1023 0.93308 NaN 1 0 Median 104170000 49836000 54332000 0 0 0 0 0 0 0 0 0 2526600 1217100 1309500 0 0 0 101640000 48618000 53023000 17665 1563 18411 91819;91820;91821 93528;93529;93530 93529 3 KLDEEALLKK HGKGSGKMKTERRMKKLDEEALLKKMSSSD ERRMKKLDEEALLKKMSSSDTPLGTVALLQ K K L K K M 1 0 0 1 0 0 2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 10 2 1185.6969 O43290 O43290 749 758 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.01599 64.374 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 969080 0 969080 0 0 0 0 0 0 0 0 0 969080 0 969080 0 0 0 0 0 0 17666 1563 18412 91822 93531 93531 1 KLDEKENLSAK SNNADVSEEERSRKRKLDEKENLSAKRSRI SRKRKLDEKENLSAKRSRIEQKEELDDVIA R K L A K R 1 0 1 1 0 0 2 0 0 0 2 3 0 0 0 1 0 0 0 0 0 0 11 2 1273.6878 Q9UBT2;U3KQ93 Q9UBT2 613 623 UBA2 SUMO-activating enzyme subunit 2 yes no 3 0.025112 24.254 By matching By MS/MS By matching 4 5 2 0.93485 0.93696 16.612 11 Median 0.86807 0.87947 6.08 4 0 Median 0.94331 0.93696 15.098 5 0 Median 1.0476 1.2441 13.656 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5606700 2762400 2844300 2812600 1423800 1388800 2001800 958040 1043800 792240 380530 411710 0 0 0 0 0 0 0 0 0 17667 4247 18413 91823;91824;91825;91826;91827;91828;91829;91830;91831;91832;91833 93532 93532 1 KLDELYGTWR GHVGRFCIWTESAFRKLDELYGTWRKAASL ESAFRKLDELYGTWRKAASLKSNYNLPMHK R K L W R K 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 10 1 1279.6561 P36578;H3BM89 P36578 259 268 RPL4 60S ribosomal protein L4 yes no 2;3 1.2505E-05 153.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 2 2 5 3 1.1426 1.1603 20.467 20 Median 1.1048 1.0974 3.495 2 0 Median 1.182 1.0783 25.721 6 0 Median 1.1143 1.1313 3.6424 2 0 Median 1.2726 1.2163 0.91638 2 0 Median 1.1095 1.1886 13.425 5 1 Median 1.5109 1.3674 32.125 3 0 Median 348710000 161080000 187630000 162690000 76854000 85836000 33938000 15476000 18462000 37061000 16745000 20317000 29207000 11722000 17485000 79331000 37984000 41347000 6482700 2300200 4182500 17668 2260 18414 91834;91835;91836;91837;91838;91839;91840;91841;91842;91843;91844;91845;91846;91847;91848;91849;91850;91851;91852;91853 93533;93534;93535;93536;93537;93538;93539;93540;93541;93542;93543;93544;93545;93546;93547;93548;93549;93550;93551;93552 93549 20 KLDEMTDRDWR KEAKQRWDDRHWSQKKLDEMTDRDWRIFRE WSQKKLDEMTDRDWRIFREDYSITTKGGKI K K L W R I 0 2 0 3 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 11 2 1463.6827 Q9BUQ8 Q9BUQ8 361 371 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3 0.00038849 60.434 By matching By MS/MS By matching By matching By matching 2 2 1 1 1 0.91177 1.0666 24.858 7 Median 0.90762 0.94603 30.969 2 0 Median NaN NaN NaN 0 0 Median 0.82645 0.94952 15.867 2 0 Median 1.6177 1.6468 NaN 1 0 Median 0.91177 1.0666 NaN 1 0 Median 1.3237 1.1474 NaN 1 0 Median 17809000 8738500 9070500 1638600 748330 890240 0 0 0 10961000 6055400 4905200 1138600 398170 740470 3193900 1223400 1970600 877260 313270 563990 17669 3842 18415 91854;91855;91856;91857;91858;91859;91860 93553 93553 1 KLDGETTDLQDQIAELQAQIDELK KKEEKTRQELEKAKRKLDGETTDLQDQIAE QDQIAELQAQIDELKLQLAKKEEELQGALA R K L L K L 2 0 0 4 0 4 3 1 0 2 4 2 0 0 0 0 2 0 0 0 0 0 24 1 2713.3658 P35580 P35580 1059 1082 MYH10 Myosin-10 yes yes 3 0.072017 2.8804 By matching By MS/MS 2 1 1.2718 1.2241 13.108 3 Plateau 0.94422 0.97555 0.39883 2 0 Median 1.2718 1.2241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6380700 2736100 3644600 623990 304320 319670 5756700 2431800 3324900 0 0 0 0 0 0 0 0 0 0 0 0 17670 2245 18416 91861;91862;91863 93554;93555 93554 2 KLDGFPLLR LDQFDAIDFSDNEIRKLDGFPLLRRLKTLL SDNEIRKLDGFPLLRRLKTLLVNNNRICRI R K L L R R 0 1 0 1 0 0 0 1 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 1 1057.6284 P09661;H0YKK0 P09661 56 64 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.0021831 80.438 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.0115 0.97234 12.356 6 Median 1.1832 1.2369 NaN 1 1 Median 1.0263 0.915 NaN 1 0 Median 0.94938 0.99623 NaN 1 0 Median 1.21 1.0711 NaN 1 0 Median 0.89573 0.94902 NaN 1 0 Median 0.99703 0.88193 NaN 1 0 Median 43689000 20964000 22725000 9941500 3722100 6219400 123790 52928 70860 16803000 8591600 8211500 1261800 559240 702520 11208000 5980400 5227400 4351200 2057600 2293500 17671 1920 18417 91864;91865;91866;91867;91868;91869 93556;93557;93558;93559;93560;93561;93562;93563;93564 93560 9 KLDLFANVVHVK EYKGELASYDMRLRRKLDLFANVVHVKSLP LRRKLDLFANVVHVKSLPGYMTRHNNLDLV R K L V K S 1 0 1 1 0 0 0 0 1 0 2 2 0 1 0 0 0 0 0 3 0 0 12 1 1381.8082 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 135 146 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2;3 7.0347E-06 101.39 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.1983 1.1235 16.27 6 Median 1.1677 1.086 1.0977 2 0 Median 1.2652 1.1533 NaN 1 0 Median 1.2947 1.3839 5.4389 2 0 Median 1.023 0.91098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29104000 13108000 15997000 21196000 9489800 11706000 341940 151530 190410 7416500 3411800 4004700 150100 54654 95445 0 0 0 0 0 0 17672 96 18418 91870;91871;91872;91873;91874;91875 93565;93566;93567;93568;93569 93567 5 KLDLNQEEK IGSTSKPQESPKGKRKLDLNQEEKKTPSKP SPKGKRKLDLNQEEKKTPSKPPAQLSPSVP R K L E K K 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1115.5823 F5H8D7;P18887;M0QYS5 F5H8D7 216 224 XRCC1 DNA repair protein XRCC1 yes no 2 0.00080668 113.62 By matching By MS/MS By MS/MS 1 1 1 1.1696 1.1426 30.228 3 Median 1.6471 1.7217 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85381 0.95459 NaN 1 0 Median 1.1696 1.1426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9653700 4981100 4672600 170170 75368 94798 0 0 0 8726500 4574900 4151500 757100 330830 426260 0 0 0 0 0 0 17673 1047 18419 91876;91877;91878 93570;93571;93572 93570 3 KLDNTTAAVQELGR GEIEKLQTKVLELQRKLDNTTAAVQELGRE RKLDNTTAAVQELGRENQSLQIKHTQALNR R K L G R E 2 1 1 1 0 1 1 1 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 1 1514.8053 Q15075 Q15075 1319 1332 EEA1 Early endosome antigen 1 yes yes 2;3 9.9512E-07 120.96 By MS/MS By MS/MS 2 2 1.4648 1.4239 38.414 4 Median 1.9394 1.9446 53.63 2 1 Median 1.4317 1.3583 16.219 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42845000 13974000 28871000 33030000 10459000 22571000 9815200 3515300 6299900 0 0 0 0 0 0 0 0 0 0 0 0 17674 2926 18420 91879;91880;91881;91882 93573;93574;93575;93576;93577 93573 4 KLDPEEEDDSFNNYEVQSEAK DFQELLMKFLPSRLRKLDPEEEDDSFNNYE EDDSFNNYEVQSEAKLESFPSIGPQRLSFD R K L A K L 1 0 2 3 0 1 5 0 0 0 1 2 0 1 1 2 0 0 1 1 0 0 21 1 2485.0769 A0A087WWW8;Q9Y6J0 A0A087WWW8 374 394 CABIN1 Calcineurin-binding protein cabin-1 yes no 3 0.026313 12.929 By MS/MS By matching 1 1 0.85892 0.89108 13.126 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70374 0.8121 NaN 1 0 Median 1.0483 0.97775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5401500 2852400 2549100 0 0 0 0 0 0 4616300 2591900 2024400 785220 260490 524720 0 0 0 0 0 0 17675 64 18421 91883;91884 93578 93578 1 KLDPEIVPEEK KESSSCGKDTPSKKRKLDPEIVPEEKDCGD SKKRKLDPEIVPEEKDCGDAEGNSKKRKRE R K L E K D 0 0 0 1 0 0 3 0 0 1 1 2 0 0 2 0 0 0 0 1 0 0 11 1 1295.6973 O43148;K7EPP5 O43148 83 93 RNMT mRNA cap guanine-N7 methyltransferase yes no 2 0.066861 26.673 By MS/MS 1 0.69636 0.73364 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69636 0.73364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1095700 592460 503220 0 0 0 0 0 0 1095700 592460 503220 0 0 0 0 0 0 0 0 0 17676 1554 18422 91885 93579 93579 1 KLDPELHLDIK ATVKILITTVPPNLRKLDPELHLDIKVLQS PNLRKLDPELHLDIKVLQSALAAIRHARWF R K L I K V 0 0 0 2 0 0 1 0 1 1 3 2 0 0 1 0 0 0 0 0 0 0 11 1 1319.7449 B4DY09;Q12905 B4DY09 148 158 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 3.2773E-05 138.99 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 7 5 0.98615 0.94992 25.666 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84383 0.91954 11.6 4 0 Median 1.0549 0.93938 27.978 3 0 Median 0.97949 1.0392 16.817 7 0 Median 1.0125 0.90238 43.487 5 0 Median 4798800000 2619100000 2179700000 0 0 0 0 0 0 4590700000 2514300000 2076300000 39098000 16947000 22151000 130900000 69819000 61085000 38103000 17965000 20138000 17677 609 18423 91886;91887;91888;91889;91890;91891;91892;91893;91894;91895;91896;91897;91898;91899;91900;91901;91902;91903;91904 93580;93581;93582;93583;93584;93585;93586;93587;93588;93589;93590;93591;93592;93593;93594;93595;93596;93597;93598 93593 19 KLDPGSEETQTLVR LSPDWQVDYESYTWRKLDPGSEETQTLVRE RKLDPGSEETQTLVREYFSWEGAFQHVGKA R K L V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 1 1571.8155 P26641 P26641 401 414 EEF1G Elongation factor 1-gamma yes yes 2;3 2.1888E-08 146.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 6 16 3 9 0.97733 0.8755 20.084 39 Median 1.0125 1.0044 11.287 3 1 Plateau 0.98492 0.81995 11.003 4 0 Linear 1.0872 1.1644 7.8881 6 0 Median 0.97733 0.87517 17.205 15 1 Median 1.1471 1.1644 19.917 3 0 Median 0.8952 0.78204 8.2009 8 3 Median 5445600000 2635500000 2810100000 157610000 77746000 79868000 73516000 37389000 36127000 876420000 406650000 469770000 4189300000 2041300000 2148000000 65294000 30360000 34933000 83418000 42078000 41340000 17678 2149 18424 91905;91906;91907;91908;91909;91910;91911;91912;91913;91914;91915;91916;91917;91918;91919;91920;91921;91922;91923;91924;91925;91926;91927;91928;91929;91930;91931;91932;91933;91934;91935;91936;91937;91938;91939;91940;91941;91942;91943;91944;91945 93599;93600;93601;93602;93603;93604;93605;93606;93607;93608;93609;93610;93611;93612;93613;93614;93615;93616;93617;93618;93619;93620;93621;93622;93623;93624;93625;93626;93627;93628;93629;93630;93631;93632;93633;93634;93635;93636;93637;93638;93639;93640;93641;93642;93643;93644;93645;93646;93647;93648;93649;93650;93651;93652;93653;93654;93655;93656;93657;93658;93659 93611 61 KLDQEMEQLNHHTTTR ISLQNEKADLDRTLRKLDQEMEQLNHHTTT LDQEMEQLNHHTTTRTQMEMLTKDKADKDE R K L T R T 0 1 1 1 0 2 2 0 2 0 2 1 1 0 0 0 3 0 0 0 0 0 16 1 1979.9483 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7ESD9;A0A494C0Y7;H7C0P8 Q92878 520 535 RAD50 DNA repair protein RAD50 yes no 3;4 2.4262E-10 101.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 5 6 2 1 1.0934 1.1205 38.565 19 Median 1.0988 1.1095 8.3492 2 0 Median 1.1859 1.1039 57.93 3 1 Median 0.89047 1.0105 48.306 5 0 Median 1.2207 1.1784 39.564 6 0 Median 1.0676 1.1952 5.0675 2 1 Median 1.1726 1.0269 NaN 1 0 Median 124530000 60585000 63944000 12579000 6413200 6165800 16513000 8110300 8402700 54631000 28576000 26054000 30439000 13159000 17280000 9457400 4053400 5404000 910390 272990 637410 17679 3561 18425 91946;91947;91948;91949;91950;91951;91952;91953;91954;91955;91956;91957;91958;91959;91960;91961;91962;91963;91964 93660;93661;93662;93663;93664;93665;93666;93667;93668;93669;93670;93671;93672;93673;93674;93675;93676;93677;93678;93679;93680 93676 21 KLDQTIMR VPESQAYMDLLAFERKLDQTIMRKRLDIQE DLLAFERKLDQTIMRKRLDIQEALKRPIKQ R K L M R K 0 1 0 1 0 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 8 1 1003.5485 Q6STE5;C9JYI7;Q96GM5;F8VZ70;F8VUB0;F8VW95 Q96GM5 156 163 SMARCD3;SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 no no 2 0.019961 51.854 By MS/MS 1 1.0155 1.1332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0155 1.1332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3285000 1511600 1773400 0 0 0 0 0 0 3285000 1511600 1773400 0 0 0 0 0 0 0 0 0 17680 3659;3183 18426 91965 93681 93681 1 KLDSELTAR TKVEKSEAKAAELEKKLDSELTARHELQVE AAELEKKLDSELTARHELQVEMKKMESDFE K K L A R H 1 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 1 1031.5611 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 487 495 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0012287 93.649 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2267 1.126 13.38 3 Median NaN NaN NaN 0 0 Median 1.2174 1.126 NaN 1 0 Median 1.2267 1.4016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2567 1.0995 NaN 1 0 Median 17661000 7947000 9713700 0 0 0 15431000 7010600 8420100 1213600 523370 690230 0 0 0 0 0 0 1016300 413010 603310 17681 274 18427 91966;91967;91968;91969 93682;93683;93684;93685 93685 4 KLDSLTTSFGFPVGAATLVDEVGVDVAK MSEVIRILQEGVDPKKLDSLTTSFGFPVGA GAATLVDEVGVDVAKHVAEDLGKVFGERFG K K L A K H 3 0 0 3 0 0 1 3 0 0 3 2 0 2 1 2 3 0 0 5 0 0 28 1 2835.4906 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 570 597 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 2.9433E-14 57.803 By MS/MS 1 1.0079 0.97505 NaN 1 Median NaN NaN NaN 0 0 Median 1.0079 0.97505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2614200 1183100 1431100 0 0 0 2614200 1183100 1431100 0 0 0 0 0 0 0 0 0 0 0 0 17682 1180 18428 91970 93686;93687 93687 2 KLDVEEPDSANSSFYSTR ARRRTTQIINITMTKKLDVEEPDSANSSFY VEEPDSANSSFYSTRSAPASQASLRATSST K K L T R S 1 1 1 2 0 0 2 0 0 0 1 1 0 1 1 4 1 0 1 1 0 0 18 1 2043.9385 A0A087WY61;Q14980 Q14980 1822 1839 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.4327E-52 226.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 3 3 2 0.8066 0.87299 20.148 15 Median 1.498 1.511 NaN 1 0 Median 0.92932 0.87299 NaN 1 0 Median 0.7658 0.91746 19.482 5 1 Median 0.94041 0.90786 12.139 3 0 Median 0.74427 0.84272 2.5769 3 0 Median 0.88439 0.78057 14.811 2 0 Median 426900000 232500000 194400000 5684000 2472800 3211100 9877900 4579300 5298600 304370000 167420000 136950000 15840000 7475400 8364200 88901000 49457000 39444000 2233000 1096100 1136800 17683 2905;77 18429 91971;91972;91973;91974;91975;91976;91977;91978;91979;91980;91981;91982;91983;91984;91985 93688;93689;93690;93691;93692;93693;93694;93695;93696;93697;93698;93699;93700;93701;93702;93703;93704;93705;93706 93698 17 KLDVSIEMPEELDISQLR IQIKKFTFGLDWVPKKLDVSIEMPEELDIS VSIEMPEELDISQLRGTGLQPGEEELPDIA K K L L R G 0 1 0 2 0 1 3 0 0 2 3 1 1 0 1 2 0 0 0 1 0 0 18 1 2114.0929 P45974 P45974 586 603 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2;3 5.0547E-08 70.942 By MS/MS 2 0.91251 0.9113 6.3206 2 Median NaN NaN NaN 0 0 Median 0.91251 0.9113 6.3206 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5940700 3227700 2713000 0 0 0 5940700 3227700 2713000 0 0 0 0 0 0 0 0 0 0 0 0 17684 2332 18430 91986;91987 93707;93708 93708 2 KLDYGQHVVAGTPGR CHACIGGTNVGEDIRKLDYGQHVVAGTPGR KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI R K L G R V 1 1 0 1 0 1 0 3 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1596.8372 P38919;I3L3H2 P38919 152 166 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3;4 2.0508E-11 110.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 6 5 1.0466 1.0209 10.326 22 Median 1.0706 1.0815 0.96877 2 1 Median 1.1916 1.1051 0.35134 2 0 Median 0.9515 1.0205 4.4959 3 1 Median 1.1069 1.0573 11.321 5 3 Median 0.9562 1.0213 14.73 5 0 Median 1.088 0.94489 5.9819 5 0 Median 323810000 154270000 169540000 18535000 8050300 10485000 14100000 6772500 7327900 59582000 28722000 30860000 93540000 42056000 51484000 105710000 53454000 52255000 32340000 15213000 17127000 17685 2278 18431 91988;91989;91990;91991;91992;91993;91994;91995;91996;91997;91998;91999;92000;92001;92002;92003;92004;92005;92006;92007;92008;92009;92010 93709;93710;93711;93712;93713;93714;93715;93716;93717;93718;93719;93720;93721;93722;93723;93724;93725;93726;93727;93728;93729;93730;93731;93732;93733;93734;93735;93736;93737;93738;93739;93740;93741;93742 93728 33 KLEAAEDIAYQLSR ANSLATAGDGLIELRKLEAAEDIAYQLSRS RKLEAAEDIAYQLSRSRNITYLPAGQSVLL R K L S R S 3 1 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 14 1 1605.8362 P35232 P35232 240 253 PHB Prohibitin yes yes 2;3 7.0904E-06 136.27 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 3 2 1.0325 1.058 17.045 13 Median 1.0088 1.0201 2.9106 2 0 Median 1.325 1.2019 6.4609 4 0 Median 0.89709 0.92321 19.279 2 1 Median 0.89468 0.84432 4.9019 3 0 Median NaN NaN NaN 0 0 Median 1.4021 1.254 0.79208 2 0 Median 107690000 50066000 57621000 57562000 28295000 29266000 42053000 17635000 24417000 4945900 2669100 2276700 1035700 518070 517600 0 0 0 2091600 948430 1143100 17686 2233 18432 92011;92012;92013;92014;92015;92016;92017;92018;92019;92020;92021;92022;92023 93743;93744;93745;93746;93747;93748;93749 93744 7 KLEADSLEVK LSLEQKTEELEGQIKKLEADSLEVKASKEQ EGQIKKLEADSLEVKASKEQALQDLQQQRQ K K L V K A 1 0 0 1 0 0 2 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 10 1 1130.6183 Q15075 Q15075 734 743 EEA1 Early endosome antigen 1 yes yes 2 0.0046738 57.267 By MS/MS By MS/MS 1 1 0.97877 0.96582 6.5183 2 Median 1.0015 1.0114 NaN 1 0 Median 0.95655 0.92232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7110700 3541900 3568800 2548100 1293900 1254200 4562600 2247900 2314700 0 0 0 0 0 0 0 0 0 0 0 0 17687 2926 18433 92024;92025 93750;93751 93751 2 KLEAELLQIEER QVLKRQVQSLMVHQRKLEAELLQIEERHQE HQRKLEAELLQIEERHQEKKRKFLESTDSF R K L E R H 1 1 0 0 0 1 4 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 1 1469.809 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61 Q969G3 240 251 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 1.0176E-06 115.18 By MS/MS By MS/MS 4 2 0.80784 0.86322 141.27 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80784 0.86322 31.23 4 2 Median 0.20264 0.19143 261.12 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149610000 108130000 41482000 0 0 0 0 0 0 85045000 46208000 38837000 64564000 61919000 2644700 0 0 0 0 0 0 17688 389 18434 92026;92027;92028;92029;92030;92031 93752;93753;93754;93755;93756;93757;93758;93759 93753 8 KLEAGIR PHASIMFCTVGVLLRKLEAGIRGISHVIVD CTVGVLLRKLEAGIRGISHVIVDEIHERDI R K L I R G 1 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 785.47594 Q08211 Q08211 497 503 DHX9 ATP-dependent RNA helicase A yes yes 2 0.044097 52.683 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2300600 0 2300600 0 0 0 507510 0 507510 0 0 0 0 0 0 1793000 0 1793000 0 0 0 17689 2736 18435 92032;92033 93760;93761 93761 2 KLEAQETLNEEDKAK KITELLNKTDNRPLKKLEAQETLNEEDKAK KLEAQETLNEEDKAKIAKSKKKMRQKVQRG K K L A K I 2 0 1 1 0 1 4 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 15 2 1744.8843 J3KPG5;F8VU39;Q9UIF9;H0YII3 J3KPG5 665 679 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.00010647 66.387 By MS/MS By MS/MS By MS/MS 1 2 2 0.98212 1.1283 9.662 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98212 1.1379 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95184 1.0874 5.2203 2 0 Median 1.1183 1.1537 17.583 2 0 Median 10591000 5204600 5386200 0 0 0 0 0 0 2412500 1281500 1131000 0 0 0 6466100 3146800 3319400 1712200 776320 935910 17690 1065 18436 92034;92035;92036;92037;92038 93762;93763;93764;93765 93764 4 KLEDAATYLSLPSTK RDGEHDLIVYKAEAKKLEDAATYLSLPSTK KLEDAATYLSLPSTKAELEEKGHSATGKSM K K L T K A 2 0 0 1 0 0 1 0 0 0 3 2 0 0 1 2 2 0 1 0 0 0 15 1 1635.872 A0A096LNH6;Q14185 A0A096LNH6 581 595 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 5.1327E-07 86.944 By MS/MS 1 0.55109 0.63642 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55109 0.63642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5731300 3793200 1938100 0 0 0 0 0 0 5731300 3793200 1938100 0 0 0 0 0 0 0 0 0 17691 140 18437 92039 93766 93766 1 KLEDQNEYESR FVDTKKLPIIKKKVRKLEDQNEYESRSLWK KKVRKLEDQNEYESRSLWKDVTFNLKIRDI R K L S R S 0 1 1 1 0 1 3 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1409.6423 Q96SU4;A0A096LPC8 Q96SU4 656 666 OSBPL9 Oxysterol-binding protein-related protein 9 yes no 3 0.067566 9.5121 By MS/MS 1 1.1103 1.1278 NaN 1 Median 1.1103 1.1278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 618950 266940 352020 618950 266940 352020 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17692 3738 18438 92040 93767 93767 1 KLEEEEAEVKR DSRLDELCNDIATKKKLEEEEAEVKRKATD ATKKKLEEEEAEVKRKATDAAYQAVKTPPR K K L K R K 1 1 0 0 0 0 5 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 11 2 1358.7042 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;H7C2P4 H7C128 144 154 BRD8 Bromodomain-containing protein 8 yes no 3 0.0048179 36.982 By MS/MS By MS/MS 2 1 0.88936 1.0134 4.5721 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81765 0.97419 5.5814 2 0 Median 0.88966 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2167700 1120000 1047700 0 0 0 0 0 0 1546600 819220 727340 621170 300820 320350 0 0 0 0 0 0 17693 620 18439 92041;92042;92043 93768;93769;93770 93769 3 KLEEEEDGKLK PKKIKTEDTKKEKKRKLEEEEDGKLKKPKN EKKRKLEEEEDGKLKKPKNKDKDKKVPEPD R K L L K K 0 0 0 1 0 0 4 1 0 0 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1316.6824 P11387 P11387 164 174 TOP1 DNA topoisomerase 1 yes yes 2;3 0.00096002 50.786 By MS/MS By MS/MS By matching By matching 4 8 3 1 0.9812 1.1435 14.101 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93143 1.1061 5.7131 4 0 Median 1.1999 1.2476 7.5846 8 0 Median 0.89027 0.99252 13.415 3 0 Median 0.87534 0.95109 NaN 1 0 Median 63866000 30608000 33258000 0 0 0 0 0 0 43649000 21771000 21878000 17516000 7475600 10041000 2480600 1269700 1210900 220290 91769 128520 17694 1962 18440 92044;92045;92046;92047;92048;92049;92050;92051;92052;92053;92054;92055;92056;92057;92058;92059 93771;93772;93773;93774;93775;93776;93777 93771 7 KLEEEGEQFVK SDGFKANLVFKEIEKKLEEEGEQFVKKIGG EIEKKLEEEGEQFVKKIGGIFAFKVKDGPG K K L V K K 0 0 0 0 0 1 4 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 11 1 1334.6718 P22307;H0YF61 P22307 443 453 SCP2 Non-specific lipid-transfer protein yes no 2 0.000186 141.95 By matching By MS/MS By MS/MS 1 1 1 1.2672 1.2829 11.994 3 Median 1.1412 1.0687 NaN 1 0 Median 1.5454 1.3397 NaN 1 0 Median 1.2672 1.2829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18030000 7306400 10724000 1426200 589390 836800 6074100 2302100 3771900 10530000 4414900 6115000 0 0 0 0 0 0 0 0 0 17695 2099 18441 92060;92061;92062 93778;93779;93780 93779 3 KLEEELEGMRR NRLKRTASEDSCKRKKLEEELEGMRRSLKE CKRKKLEEELEGMRRSLKEQAIKITNLTQQ K K L R R S 0 2 0 0 0 0 4 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 11 2 1388.7082 P15924 P15924 1593 1603 DSP Desmoplakin yes yes 3 0.027137 23.749 By MS/MS By matching By matching 1 1 1 1.142 1.1012 43.234 3 Plateau 0.85311 0.82299 NaN 1 0 Median 1.142 1.1012 NaN 1 0 Median 0.39141 0.47035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9087500 4960100 4127300 2472700 1436200 1036500 5324200 2738600 2585600 1290600 785330 505270 0 0 0 0 0 0 0 0 0 17696 2021 18442 92063;92064;92065 93781 93781 1 KLEEEQIILEDQNCK QKLQLEKVTTEAKLKKLEEEQIILEDQNCK KLEEEQIILEDQNCKLAKEKKLLEDRIAEF K K L C K L 0 0 1 1 1 2 4 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 15 1 1887.9248 P35579 P35579 975 989 MYH9 Myosin-9 yes yes 2;3 9.1445E-10 127.17 By MS/MS 3 1.0902 1.0389 14.394 3 Plateau NaN NaN NaN 0 0 Median 1.0902 1.0389 14.394 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28254000 13466000 14789000 0 0 0 28254000 13466000 14789000 0 0 0 0 0 0 0 0 0 0 0 0 17697 2244 18443 92066;92067;92068 93782;93783;93784;93785;93786 93784 5 KLEEGGPVYSPPAEVVVK SVVEKSLKSLKDKNKKLEEGGPVYSPPAEV EGGPVYSPPAEVVVKKSLGQRVLDELKHYY K K L V K K 1 0 0 0 0 0 3 2 0 0 1 2 0 0 3 1 0 0 1 4 0 0 18 1 1897.0197 O95202 O95202 133 150 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 0.059252 17.296 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.84047 0.83872 6.4164 4 Median 0.80917 0.83278 NaN 1 1 Median 0.87298 0.8447 NaN 1 0 Median 0.6978 0.79214 NaN 1 0 Median 0.94586 0.92401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14608000 7948100 6660100 7599700 4100700 3499000 3516900 2090300 1426600 2576900 1335300 1241600 914650 421680 492960 0 0 0 0 0 0 17698 1754 18444 92069;92070;92071;92072 93787;93788 93787 2 KLEEGGPVYSPPAEVVVKK SVVEKSLKSLKDKNKKLEEGGPVYSPPAEV GGPVYSPPAEVVVKKSLGQRVLDELKHYYH K K L K K S 1 0 0 0 0 0 3 2 0 0 1 3 0 0 3 1 0 0 1 4 0 0 19 2 2025.1146 O95202 O95202 133 151 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3;4 0.0055173 24.893 By MS/MS 2 0.68564 0.66992 13.276 2 Median 0.68564 0.66992 13.276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9881800 5993000 3888800 9881800 5993000 3888800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17699 1754 18445 92073;92074 93789;93790;93791 93789 3 KLEEHEESLVGR DVETEMQQKLRVLQRKLEEHEESLVGRAQV LQRKLEEHEESLVGRAQVVDLLQQELTAAE R K L G R A 0 1 0 0 0 0 4 1 1 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1424.726 Q14789;E7EU81;H0Y867 Q14789 260 271 GOLGB1 Golgin subfamily B member 1 yes no 2;3 8.9026E-07 107.09 By MS/MS By MS/MS 3 3 1.0907 1.0656 9.9389 4 Median 1.1342 1.1667 2.7178 2 1 Median 1.0435 0.98466 1.0547 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25333000 11413000 13920000 7752300 3262100 4490200 17581000 8150700 9430000 0 0 0 0 0 0 0 0 0 0 0 0 17700 2900 18446 92075;92076;92077;92078;92079;92080 93792;93793;93794;93795;93796;93797;93798 93796 7 KLEEKEHLLQSNIGTGEK LTLKTQVDAQLQVVRKLEEKEHLLQSNIGT EKEHLLQSNIGTGEKELGLRTQALEMNKRK R K L E K E 0 0 1 0 0 1 4 2 1 1 3 3 0 0 0 1 1 0 0 0 0 0 18 2 2052.0851 Q5VTR2 Q5VTR2 804 821 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3;4 2.2865E-05 48.848 By matching By MS/MS By matching 1 2 1 0.98972 1.0979 4.1211 4 Median 1.1087 1.1622 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88918 1.0685 1.2781 2 0 Median 1.0917 1.118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22400000 10972000 11428000 2454600 1082900 1371700 0 0 0 19340000 9609500 9730300 605480 279240 326250 0 0 0 0 0 0 17701 3112 18447 92081;92082;92083;92084 93799;93800;93801;93802 93802 4 KLEELEKEEELR EGHNIADYIDPAIMKKLEELEKEEELRTAA IMKKLEELEKEEELRTAAGEYDSVSESEDE K K L L R T 0 1 0 0 0 0 6 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 2 1543.8094 Q9BZE4 Q9BZE4 449 460 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 5.6017E-05 86.467 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 4 0.98152 1.0672 53.703 8 Median 0.20913 0.2377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77487 0.8857 NaN 1 0 Median 1.0011 1.07 NaN 1 0 Median 0.96231 1.134 NaN 1 0 Median 1.1483 1.0734 16.941 4 0 Median 81594000 39519000 42075000 2214400 1715900 498500 0 0 0 5166600 3035800 2130800 1274900 571800 703060 49655000 23574000 26080000 23283000 10621000 12663000 17702 3898 18448 92085;92086;92087;92088;92089;92090;92091;92092 93803;93804;93805;93806;93807 93804 4 KLEELELDEQQKK TSEGASEANLVDLQKKLEELELDEQQKKRL QKKLEELELDEQQKKRLEAFLTQKAKVGEL K K L K K R 0 0 0 1 0 2 4 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 13 2 1628.8621 P36507 P36507 40 52 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes yes 3 3.3758E-05 84.892 By MS/MS By MS/MS 2 1 0.70329 0.69651 7.07 3 Median 0.73088 0.72992 9.2374 2 0 Median 0.70329 0.69651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12872000 7489300 5383000 6287300 3629700 2657600 6585000 3859600 2725400 0 0 0 0 0 0 0 0 0 0 0 0 17703 2256 18449 92093;92094;92095 93808;93809;93810;93811;93812;93813 93813 6 KLEELELDEQQR NGTSSAETNLEALQKKLEELELDEQQRKRL LQKKLEELELDEQQRKRLEAFLTQKQKVGE K K L Q R K 0 1 0 1 0 2 4 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 1 1528.7733 Q02750 Q02750 36 47 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 3 0.0029934 54.343 By MS/MS 1 0.81744 0.71538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81744 0.71538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1944400 1104700 839670 0 0 0 0 0 0 0 0 0 1944400 1104700 839670 0 0 0 0 0 0 17704 2700 18450 92096 93814 93814 1 KLEELELDEQQRK NGTSSAETNLEALQKKLEELELDEQQRKRL QKKLEELELDEQQRKRLEAFLTQKQKVGEL K K L R K R 0 1 0 1 0 2 4 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 13 2 1656.8683 Q02750 Q02750 36 48 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 3 0.0016936 38.787 By matching By MS/MS By matching 1 2 1 0.61494 0.65116 23.731 4 Median 0.51089 0.54091 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70311 0.79893 24.266 2 0 Median 0.64713 0.63006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14679000 8577800 6101100 2710900 1833200 877700 0 0 0 9486300 5260600 4225700 2481800 1484000 997710 0 0 0 0 0 0 17705 2700 18451 92097;92098;92099;92100 93815;93816 93815 2 KLEELEQK TIVAESLQQVRQQLKKLEELEQKYTYEHDP QVRQQLKKLEELEQKYTYEHDPITKNKQVL K K L Q K Y 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 8 1 1015.555 P42224;J3KPM9 P42224 279 286 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.0090656 71.501 By matching By MS/MS By matching By matching 1 1 1 1 1.0787 1.1357 9.3823 4 Median 1.0641 1.103 NaN 1 0 Median 1.0385 1.0045 NaN 1 0 Median 1.0935 1.2537 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.123 1.1693 NaN 1 0 Median NaN NaN NaN 0 0 Median 4753200 2115900 2637300 1218700 576630 642050 2254400 959810 1294500 892660 399470 493190 0 0 0 387460 179960 207500 0 0 0 17706 2308 18452 92101;92102;92103;92104 93817;93818 93818 2 KLEELLIK LNHKYYQDCSGGDRKKLEELLIKTKKEKPT CSGGDRKKLEELLIKTKKEKPTFIPYFICA K K L I K T 0 0 0 0 0 0 2 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 8 1 984.62193 Q7KZ85 Q7KZ85 1442 1449 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.020913 50.703 By MS/MS 1 1.1292 1.0603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1292 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2684700 1213300 1471400 0 0 0 0 0 0 0 0 0 2684700 1213300 1471400 0 0 0 0 0 0 17707 3213 18453 92105 93819 93819 1 KLEELLNSVGQK AGLESNLKKTEDRKRKLEELLNSVGQKVSE RKRKLEELLNSVGQKVSELKEKFQSRTSEA R K L Q K V 0 0 1 0 0 1 2 1 0 0 3 2 0 0 0 1 0 0 0 1 0 0 12 1 1356.7613 Q8NCM8 Q8NCM8 3129 3140 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2;3 0.00037461 51.359 By MS/MS 2 1.0224 1.1139 1.309 2 Median 1.0224 1.1139 1.309 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12881000 6140400 6740800 12881000 6140400 6740800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17708 3418 18454 92106;92107 93820;93821 93820 2 KLEENPYDLDAWSILIR QAAEYVPEKVKKAEKKLEENPYDLDAWSIL EENPYDLDAWSILIREAQNQPIDKARKTYE K K L I R E 1 1 1 2 0 0 2 0 0 2 3 1 0 0 1 1 0 1 1 0 0 0 17 1 2074.0735 Q12996;E9PLP8;E9PJ06 Q12996 24 40 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.00012137 41.871 By matching By matching By MS/MS 1 1 1 0.88522 0.94174 28.385 3 Median 0.60935 0.61823 NaN 1 0 Median 1.0563 1.0613 NaN 1 0 Median 0.88522 0.94174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2143200 1124700 1018500 267170 151170 115990 543270 237890 305380 1332800 735630 597170 0 0 0 0 0 0 0 0 0 17709 2777 18455 92108;92109;92110 93822;93823 93822 2 KLEEVLSTEGAEENGNSDKK KPRNTAELQPESGKRKLEEVLSTEGAEENG LSTEGAEENGNSDKKKKAKRD_________ R K L K K K 1 0 2 1 0 0 5 2 0 0 2 3 0 0 0 2 1 0 0 1 0 0 20 2 2176.0495 O15355 O15355 521 540 PPM1G Protein phosphatase 1G yes yes 3 1.943E-05 38.888 By MS/MS 1 0.74639 0.76166 NaN 1 Median 0.74639 0.76166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4929300 2057600 2871600 4929300 2057600 2871600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17710 1538 18456 92111 93824;93825 93824 2 KLEGDSTDLSDQIAELQAQIAELK RREEKQRQELEKTRRKLEGDSTDLSDQIAE SDQIAELQAQIAELKMQLAKKEEELQAALA R K L L K M 3 0 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 24 1 2614.3338 P35579 P35579 1052 1075 MYH9 Myosin-9 yes yes 3 3.3669E-16 63.122 By MS/MS 1 1.2382 1.1996 NaN 1 Median NaN NaN NaN 0 0 Median 1.2382 1.1996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2424100 1056400 1367700 0 0 0 2424100 1056400 1367700 0 0 0 0 0 0 0 0 0 0 0 0 17711 2244 18457 92112 93826;93827 93827 2 KLEGELTEEVEMAK EEYITTSKQSLEEQKKLEGELTEEVEMAKR KKLEGELTEEVEMAKRRIDEINKELNQVME K K L A K R 1 0 0 0 0 0 5 1 0 0 2 2 1 0 0 0 1 0 0 1 0 0 14 1 1604.7967 Q14683;G8JLG1 Q14683 454 467 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 5.1677E-06 144.47 By MS/MS By matching 2 1 1.4193 1.3235 23.297 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2924 1.4996 31.327 2 1 Median 1.4193 1.3235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31676000 13016000 18661000 0 0 0 0 0 0 30923000 12772000 18151000 752840 243710 509130 0 0 0 0 0 0 17712 2889 18458 92113;92114;92115 93828;93829;93830 93830 3 KLEGELTEEVEMAKR EEYITTSKQSLEEQKKLEGELTEEVEMAKR KLEGELTEEVEMAKRRIDEINKELNQVMEQ K K L K R R 1 1 0 0 0 0 5 1 0 0 2 2 1 0 0 0 1 0 0 1 0 0 15 2 1760.8978 Q14683;G8JLG1 Q14683 454 468 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 5.4087E-10 145.86 By MS/MS By MS/MS By matching 1 1 1 0.83407 0.95041 13.141 3 Median 1.0681 1.1291 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83407 0.95041 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74197 0.87227 NaN 1 0 Median NaN NaN NaN 0 0 Median 64039000 33339000 30700000 8720300 4431700 4288500 0 0 0 48259000 24962000 23297000 0 0 0 7060000 3945300 3114700 0 0 0 17713 2889 18459 92116;92117;92118 93831;93832;93833;93834 93833 4 KLEHLITELVHQR LADSVLMEQPPLRRRKLEHLITELVHQRDV RRKLEHLITELVHQRDVTRSLIKSKIDNAK R K L Q R D 0 1 0 0 0 1 2 0 2 1 3 1 0 0 0 0 1 0 0 1 0 0 13 1 1614.9206 Q14204 Q14204 1807 1819 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 7.6944E-06 92.039 By MS/MS By MS/MS 2 2 1.1814 1.1565 14.218 4 Median 1.259 1.2993 9.148 2 0 Median 1.1333 1.0452 6.9958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58398000 26510000 31888000 15297000 7287900 8009100 43101000 19222000 23879000 0 0 0 0 0 0 0 0 0 0 0 0 17714 2865 18460 92119;92120;92121;92122 93835;93836;93837;93838;93839;93840;93841 93840 7 KLELDILPLQEANAELSEK ERLEQDLQQMQAKVRKLELDILPLQEANAE DILPLQEANAELSEKSGMLQAEKKLLEEDV R K L E K S 2 0 1 1 0 1 4 0 0 1 5 2 0 0 1 1 0 0 0 0 0 0 19 1 2152.1627 P12270 P12270 1299 1317 TPR Nucleoprotein TPR yes yes 3 1.3249E-10 95.414 By MS/MS By MS/MS By MS/MS 1 1 1 1.1182 1.1254 19.986 3 Plateau 0.73007 0.79134 NaN 1 1 Median 1.2129 1.1659 NaN 1 0 Median 0.76558 0.88247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14191000 7006600 7184900 3392900 2060300 1332500 6865700 2852800 4012800 3932900 2093400 1839500 0 0 0 0 0 0 0 0 0 17715 1978 18461 92123;92124;92125 93842;93843;93844;93845;93846 93846 5 KLELDIPDDAK SETEKLTSHCFEWDRKLELDIPDDAKDLIR EWDRKLELDIPDDAKDLIRTAVGQTRLLMK R K L A K D 1 0 0 3 0 0 1 0 0 1 2 2 0 0 1 0 0 0 0 0 0 0 11 1 1255.666 Q15398 Q15398 454 464 DLGAP5 Disks large-associated protein 5 yes yes 2 0.0086706 44.863 By MS/MS 1 0.63186 0.60189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63186 0.60189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1094700 681700 413050 0 0 0 0 0 0 0 0 0 1094700 681700 413050 0 0 0 0 0 0 17716 2948 18462 92126 93847 93847 1 KLELEVETVEK DEKVPLAKASSLSKRKLELEVETVEKKKKG LSKRKLELEVETVEKKKKGRPRKDSRLMPV R K L E K K 0 0 0 0 0 0 4 0 0 0 2 2 0 0 0 0 1 0 0 2 0 0 11 1 1315.7235 P54198 P54198 630 640 HIRA Protein HIRA yes yes 2 0.00067817 68.893 By MS/MS 1 1.0789 1.0277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0789 1.0277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2086900 913360 1173500 0 0 0 0 0 0 0 0 0 2086900 913360 1173500 0 0 0 0 0 0 17717 2481 18463 92127 93848 93848 1 KLELSDNR GLTSIANLPKLNKLKKLELSDNRVSGGLEV PKLNKLKKLELSDNRVSGGLEVLAEKCPNL K K L N R V 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 973.51926 P39687;H0YN26 P39687 68 75 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 2 0.011786 63.48 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.98272 1.0041 4.5315 5 Median 0.98257 1.0077 3.5538 2 0 Median 1.1329 1.0594 NaN 1 0 Median 0.97785 1.0041 NaN 1 0 Median 1.0644 0.94218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11073000 5324800 5748300 7365800 3594800 3771100 1689500 772180 917320 1854300 881340 972920 163510 76502 87009 0 0 0 0 0 0 17718 2282 18464 92128;92129;92130;92131;92132 93849;93850;93851;93852 93850 4 KLELSENR GLISVSNLPKLPKLKKLELSENRIFGGLDM PKLPKLKKLELSENRIFGGLDMLAEKLPNL K K L N R I 0 1 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 987.53491 Q92688 Q92688 68 75 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2 0.011185 65.252 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.0636 0.97683 8.4932 8 Median 0.88399 0.9595 4.2032 3 0 Plateau 1.1332 1.0469 6.7599 2 0 Median 1.0944 1.1362 NaN 1 0 Median 1.0636 0.97212 3.1265 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19647000 9354400 10292000 6500500 3228900 3271600 3306900 1544400 1762500 5838400 2576100 3262200 4001000 2005000 1996000 0 0 0 0 0 0 17719 3549 18465 92133;92134;92135;92136;92137;92138;92139;92140 93853;93854;93855;93856;93857;93858 93854 6 KLEMDLK EDERKQRSMAVAARKKLEMDLKDLEAHIDS SMAVAARKKLEMDLKDLEAHIDSANKNRDE K K L L K D 0 0 0 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 7 1 875.47864 P35579 P35579 1614 1620 MYH9 Myosin-9 yes yes 2 0.023717 67.897 By MS/MS 1 1.125 1.0761 NaN 1 Median NaN NaN NaN 0 0 Median 1.125 1.0761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13238000 6476200 6762100 0 0 0 13238000 6476200 6762100 0 0 0 0 0 0 0 0 0 0 0 0 17720 2244 18466 92141 93859;93860 93860 2 KLEMEDYPSFMAK VEEKKQQRRRVPAKRKLEMEDYPSFMAKRF KRKLEMEDYPSFMAKRFADFTVYRNRTLQK R K L A K R 1 0 0 1 0 0 2 0 0 0 1 2 2 1 1 1 0 0 1 0 0 0 13 1 1587.7313 Q9NY61 Q9NY61 342 354 AATF Protein AATF yes yes 3 0.056491 11.44 By MS/MS 1 0.82633 0.92449 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82633 0.92449 NaN 1 0 Median NaN NaN NaN 0 0 Median 1988300 964110 1024200 0 0 0 0 0 0 0 0 0 0 0 0 1988300 964110 1024200 0 0 0 17721 4172 18467 92142 93861 93861 1 KLEMLGAEK AEGKSVQQTVELLTRKLEMLGAEKQGTFCV VELLTRKLEMLGAEKQGTFCVDCETYHTAA R K L E K Q 1 0 0 0 0 0 2 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 9 1 1017.5529 Q9H944;A6PVP4;B7ZBQ3 Q9H944 27 35 MED20 Mediator of RNA polymerase II transcription subunit 20 yes no 2 0.0028329 75.378 By matching By MS/MS 2 1 0.71301 0.71129 63.16 3 Median 0.52001 0.5142 85.303 2 0 Median NaN NaN NaN 0 0 Median 0.71301 0.71129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12227000 7032500 5194200 6111700 3693600 2418100 0 0 0 6115100 3339000 2776200 0 0 0 0 0 0 0 0 0 17722 3993 18468 92143;92144;92145 93862 93862 1 KLENCNYAVELGK KVNKPPYPKLGANMKKLENCNYAVELGKHP MKKLENCNYAVELGKHPAKFSLVGIGGQDL K K L G K H 1 0 2 0 1 0 2 1 0 0 2 2 0 0 0 0 0 0 1 1 0 0 13 1 1536.7606 P13797;A0A0A0MSQ0;P13796 P13797 459 471 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2;3 3.7204E-05 141.73 By MS/MS By MS/MS 2 2 1.1914 1.1102 6.9883 4 Linear 1.0395 0.98409 5.3601 2 0 Median 1.1564 1.0773 5.9844 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53063000 24357000 28706000 7539300 3548300 3991000 45523000 20809000 24715000 0 0 0 0 0 0 0 0 0 0 0 0 17723 1995 18469 92146;92147;92148;92149 93863;93864;93865;93866;93867 93863 5 KLENCNYAVELGKHPAK KVNKPPYPKLGANMKKLENCNYAVELGKHP ENCNYAVELGKHPAKFSLVGIGGQDLNDGN K K L A K F 2 0 2 0 1 0 2 1 1 0 2 3 0 0 1 0 0 0 1 1 0 0 17 2 1970.0044 P13797;A0A0A0MSQ0 P13797 459 475 PLS3 Plastin-3 yes no 3;4 5.0202E-05 48.547 By MS/MS 2 0.91584 0.93457 3.1472 2 Median 0.91584 0.93457 3.1472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13453000 6373300 7079900 13453000 6373300 7079900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17724 1995 18470 92150;92151 93868;93869;93870;93871 93870 4 KLENSPLGEALR AGKLSYVKTCQEKFKKLENSPLGEALRSGQ KFKKLENSPLGEALRSGQARRSSPPGHYYQ K K L L R S 1 1 1 0 0 0 2 1 0 0 3 1 0 0 1 1 0 0 0 0 0 0 12 1 1325.7303 D6RDK6;D6RBN5;Q9NX40;D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9 D6RDK6 50 61 OCIAD1 OCIA domain-containing protein 1 yes no 3 0.020679 33.195 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17725 815 18471 92152 93872 93872 1 KLEQLYNR ELYIRESVKGSLDRKKLEQLYNRYKDPQDE KGSLDRKKLEQLYNRYKDPQDENKIGIDGI K K L N R Y 0 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 1 1062.5822 Q96GG9;C9JVE2;C9JRU6;C9J0B2;C9J8R4 Q96GG9 64 71 DCUN1D1 DCN1-like protein 1;DCN1-like protein yes no 2 0.0050074 91.041 By matching By MS/MS By MS/MS 1 1 1 0.95908 1.0023 7.8535 3 Plateau 0.881 0.92734 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95908 1.0023 NaN 1 0 Median 0.96767 0.85659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14114000 6838200 7275900 1576800 904580 672170 0 0 0 11195000 5244700 5950000 1342600 688890 653720 0 0 0 0 0 0 17726 3657 18472 92153;92154;92155 93873;93874;93875 93874 3 KLERPPETPTVDPTVK EEGRPGKKLKKVKLRKLERPPETPTVDPTV LERPPETPTVDPTVKYERQPEYLDATGGTL R K L V K Y 0 1 0 1 0 0 2 0 0 0 1 2 0 0 4 0 3 0 0 2 0 0 16 2 1805.9887 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 696 711 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3;4 7.047E-11 129.05 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 5 1 2 0.60174 0.67142 19.346 15 Median NaN NaN NaN 0 0 Median 0.60174 0.64108 17.234 3 0 Median 0.50159 0.66415 22.513 4 0 Median 0.65458 0.72852 11.724 5 0 Median 0.38817 0.45742 NaN 1 0 Median 0.61411 0.60942 11.282 2 0 Median 176820000 109130000 67692000 0 0 0 11731000 6903500 4827200 99716000 64250000 35467000 57488000 33481000 24007000 2595800 1698500 897270 5293700 2800100 2493700 17727 246 18473 92156;92157;92158;92159;92160;92161;92162;92163;92164;92165;92166;92167;92168;92169;92170 93876;93877;93878;93879;93880;93881;93882;93883;93884;93885;93886;93887;93888;93889;93890;93891;93892;93893;93894;93895;93896;93897;93898 93889 23 KLESFYIQK IQDFMRQKGFGTDFKKLESFYIQKVLDIIA FGTDFKKLESFYIQKVLDIIATINKGSIVW K K L Q K V 0 0 0 0 0 1 1 0 0 1 1 2 0 1 0 1 0 0 1 0 0 0 9 1 1154.6336 P07686;Q5URX0;H0YA83 P07686 382 390 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2 0.0004517 137.14 By MS/MS By MS/MS By MS/MS 2 2 1 1.4982 1.4451 17.916 5 Median 1.2105 1.2028 27.194 2 0 Median 1.6157 1.4651 1.9382 2 0 Median 1.1597 1.1567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60572000 27821000 32751000 43916000 21149000 22767000 10231000 3804600 6425900 6425900 2867800 3558100 0 0 0 0 0 0 0 0 0 17728 1888 18474 92171;92172;92173;92174;92175 93899;93900;93901;93902;93903 93900 5 KLESILAQDQDLKER KEIKINPEKLIDVQKKLESILAQDQDLKER KLESILAQDQDLKERAQRCFVSYVRSVYLM K K L E R A 1 1 0 2 0 2 2 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 15 2 1784.9632 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 453 467 DDX10 Probable ATP-dependent RNA helicase DDX10 yes no 3 0.00012147 60.489 By MS/MS By matching 1 1 0.78075 0.85848 39.996 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96661 1.1391 NaN 1 0 Median 0.63063 0.647 NaN 1 0 Median 12858000 6588800 6269500 0 0 0 0 0 0 0 0 0 0 0 0 11583000 5697900 5885200 1275300 890880 384400 17729 427 18475 92176;92177 93904 93904 1 KLESVAEEHEILTK ERAQSDIEHLFQHNRKLESVAEEHEILTKS RKLESVAEEHEILTKSYMELLQRNESTEKK R K L T K S 1 0 0 0 0 0 4 0 1 1 2 2 0 0 0 1 1 0 0 1 0 0 14 1 1624.8672 Q8TCG1;A0A087X211 Q8TCG1 716 729 KIAA1524 Protein CIP2A yes no 3 0.0018065 35.891 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.95803 0.94378 16.28 5 Median 0.89383 0.93186 1.7974 2 0 Median 1.0726 1.0378 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4294 1.3106 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95803 0.86433 NaN 1 0 Median 14759000 7054000 7705300 8248000 3734900 4513100 3403000 1855700 1547300 0 0 0 809880 363730 446150 0 0 0 2298300 1099700 1198700 17730 127 18476 92178;92179;92180;92181;92182 93905;93906 93906 2 KLESVFFHSLSGSK GDTRNDKIKPSTETRKLESVFFHSLSGSKS RKLESVFFHSLSGSKSSRRNFKEQAPKTRS R K L S K S 0 0 0 0 0 0 1 1 1 0 2 2 0 2 0 4 0 0 0 1 0 0 14 1 1564.8249 Q8NEF9 Q8NEF9 339 352 SRFBP1 Serum response factor-binding protein 1 yes yes 3 0.00046019 45.863 By MS/MS By matching By matching 1 1 1 0.91817 1.0237 11.169 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0735 1.1225 NaN 1 0 Median 0.91817 0.91778 NaN 1 0 Median 0.87535 0.93354 NaN 1 0 Median NaN NaN NaN 0 0 Median 10884000 5677200 5207000 0 0 0 0 0 0 7326300 3774300 3552000 566540 262020 304520 2991400 1640900 1350500 0 0 0 17731 3429 18477 92183;92184;92185 93907;93908 93908 2 KLETAVNLAWTAGNSNTR DGTEFGGSIYQKVNKKLETAVNLAWTAGNS TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K K L T R F 3 1 3 0 0 0 1 1 0 0 2 1 0 0 0 1 3 1 0 1 0 0 18 1 1945.0017 P21796 P21796 201 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2;3 4.6539E-127 287.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 3 1.2517 1.254 18.617 15 Median 1.089 1.1198 31.364 4 0 Median 1.4537 1.2887 3.0447 2 0 Median 1.1706 1.2698 1.7756 2 1 Median 1.3266 1.252 7.8938 2 0 Median 1.3883 1.5061 10.854 2 1 Median 1.2326 1.077 5.4984 3 0 Plateau 575420000 263850000 311570000 467060000 218120000 248940000 53358000 21197000 32162000 26260000 11852000 14408000 4786900 1881600 2905300 10999000 4816000 6182700 12949000 5977300 6972200 17732 2092 18478 92186;92187;92188;92189;92190;92191;92192;92193;92194;92195;92196;92197;92198;92199;92200 93909;93910;93911;93912;93913;93914;93915;93916;93917;93918;93919;93920;93921;93922;93923;93924;93925;93926;93927;93928;93929 93910 21 KLETEETVPETDVETK MEKFTDADKETEIVKKLETEETVPETDVET LETEETVPETDVETKKPEVASWVHFDNLKG K K L T K K 0 0 0 1 0 0 5 0 0 0 1 2 0 0 1 0 4 0 0 2 0 0 16 1 1846.9048 Q03701 Q03701 659 674 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 3.2389E-05 56.959 By matching By MS/MS By matching By MS/MS 2 1 1 1 1.0013 0.97896 14.226 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8642 0.98895 20.723 2 0 Median 1.1626 1.1075 NaN 1 0 Median 0.75176 0.84231 NaN 1 0 Median 1.0838 0.97896 NaN 1 0 Median 15540000 7377800 8162300 0 0 0 0 0 0 5370600 3159100 2211500 3533400 1413400 2120000 5011100 2092100 2919000 1625000 713240 911780 17733 2710 18479 92201;92202;92203;92204;92205 93930;93931 93930 2 KLETLSLNNNHLR NNKLTVLPDEICNLKKLETLSLNNNHLREL LKKLETLSLNNNHLRELPSTFGQLSALKTL K K L L R E 0 1 3 0 0 0 1 0 1 0 4 1 0 0 0 1 1 0 0 0 0 0 13 1 1550.8529 H3BSW0;A0A3B3ISV5;Q8N9N7 H3BSW0 86 98 LRRC57 Leucine-rich repeat-containing protein 57 yes no 3 0.00022007 62.258 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.92691 0.86488 24.772 5 Median 0.70816 0.74089 NaN 1 0 Median 0.92691 0.86488 0 2 0 Median 0.91864 0.94874 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3508 1.4282 NaN 1 1 Median NaN NaN NaN 0 0 Median 20602000 10060000 10542000 7982200 4419300 3562800 4715200 2156000 2559200 3486900 1753700 1733200 0 0 0 4418000 1730900 2687100 0 0 0 17734 429 18480 92206;92207;92208;92209;92210 93932;93933;93934 93932 3 KLEVEANNAFDQYR DPPLEDGAMPSARLRKLEVEANNAFDQYRD RKLEVEANNAFDQYRDLYFEGGVSSVYLWD R K L Y R D 2 1 2 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 14 1 1695.8216 B1AK87;B1AK88;P47756;B1AK85 B1AK87 83 96 CAPZB F-actin-capping protein subunit beta yes no 2;3 9.4016E-07 139.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 6 2 2 1.083 1.117 28.012 12 Median 1.0345 1.044 5.7099 2 0 Median 1.2051 1.0713 39.032 6 4 Median 1.0055 1.0645 10.655 2 1 Median 1.4045 1.3255 1.8549 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150580000 68458000 82122000 42320000 19672000 22648000 43746000 18538000 25208000 53166000 26193000 26973000 11349000 4055400 7293300 0 0 0 0 0 0 17735 566 18481 92211;92212;92213;92214;92215;92216;92217;92218;92219;92220;92221;92222 93935;93936;93937;93938;93939;93940;93941;93942;93943;93944;93945;93946;93947;93948;93949 93938 14 KLEVEYEQK RLYEKENPDIYKELRKLEVEYEQKRAQLSQ IYKELRKLEVEYEQKRAQLSQYFDAVKNAQ R K L Q K R 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1164.6027 Q9Y2W2;F5H5G4 Q9Y2W2 109 117 WBP11 WW domain-binding protein 11 yes no 2 0.0011598 96.331 By MS/MS By matching By MS/MS 1 1 1 0.97716 0.95458 14.815 3 Median NaN NaN NaN 0 0 Median 1.0179 0.98459 NaN 1 0 Median 0.65695 0.75111 NaN 1 0 Median 0.97716 0.95458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7048600 3538900 3509800 0 0 0 2449300 1088800 1360600 1253000 768820 484220 3346300 1681300 1665000 0 0 0 0 0 0 17736 4394 18482 92223;92224;92225 93950;93951;93952;93953 93952 4 KLEVEYEQKR RLYEKENPDIYKELRKLEVEYEQKRAQLSQ YKELRKLEVEYEQKRAQLSQYFDAVKNAQH R K L K R A 0 1 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 10 2 1320.7038 Q9Y2W2;F5H5G4 Q9Y2W2 109 118 WBP11 WW domain-binding protein 11 yes no 3 0.0039804 41.704 By matching By MS/MS By MS/MS 1 1 1 1.1818 1.2561 7.0212 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2988 1.3882 NaN 1 0 Median 1.0659 1.2561 NaN 1 0 Median 1.1818 1.2124 NaN 1 0 Median 4114000 1923400 2190600 0 0 0 0 0 0 0 0 0 606590 192390 414200 2685100 1352200 1332900 822300 378870 443430 17737 4394 18483 92226;92227;92228 93954;93955;93956;93957 93955 4 KLEVNEAELLR KTVRGSLERQAGQIKKLEVNEAELLRRRNF GQIKKLEVNEAELLRRRNFKVMIYQDEVKL K K L L R R 1 1 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1312.7351 Q6NZI2 Q6NZI2 137 147 PTRF Polymerase I and transcript release factor yes yes 3 0.00062899 52.391 By MS/MS By matching 1 2 1.2069 1.2081 8.9281 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2196 1.2351 NaN 1 0 Median 1.1266 1.0696 4.6257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9522100 4771000 4751100 0 0 0 0 0 0 5960100 2678000 3282000 3562100 2093000 1469100 0 0 0 0 0 0 17738 3147 18484 92229;92230;92231 93958 93958 1 KLFADAEEEQR EILNKYVGESEANIRKLFADAEEEQRRLGA ANIRKLFADAEEEQRRLGANSGLHIIIFDE R K L Q R R 2 1 0 1 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 11 1 1334.6466 I3L0N3;P46459 I3L0N3 299 309 NSF Vesicle-fusing ATPase yes no 3 0.0025614 38.402 By MS/MS By matching 1 1 1.0595 1.0715 16.022 2 Median 0.93657 0.95671 NaN 1 0 Median 1.1985 1.2 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3566700 1961100 1605600 1944700 1175200 769500 1622000 785850 836140 0 0 0 0 0 0 0 0 0 0 0 0 17739 1272 18485 92232;92233 93959 93959 1 KLFADAEEEQRR EILNKYVGESEANIRKLFADAEEEQRRLGA NIRKLFADAEEEQRRLGANSGLHIIIFDEI R K L R R L 2 2 0 1 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 12 2 1490.7478 I3L0N3;P46459 I3L0N3 299 310 NSF Vesicle-fusing ATPase yes no 3 0.00018031 75.479 By matching By MS/MS 1 1 1.0999 1.2189 31.989 2 Median 0.96375 0.97214 NaN 1 0 Median 1.2553 1.5283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10433000 4911500 5521600 5171500 2640200 2531300 5261500 2271200 2990300 0 0 0 0 0 0 0 0 0 0 0 0 17740 1272 18486 92234;92235 93960 93960 1 KLFEELVR QHLIAREAEAAMFHRKLFEELVRASSHSTD EAAMFHRKLFEELVRASSHSTDLMEAMAMG R K L V R A 0 1 0 0 0 0 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 1 1032.5968 H3BTN5 H3BTN5 393 400 PKM Pyruvate kinase no no 2 0.026844 59.245 By MS/MS 1 1.2139 1.2176 NaN 1 Median 1.2139 1.2176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11783000 6133500 5649200 11783000 6133500 5649200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17741 1237 18487 92236 93961 93961 1 KLFIGGLSFETTDDSLR RGEEGHDPKEPEQLRKLFIGGLSFETTDDS FIGGLSFETTDDSLREHFEKWGTLTDCVVM R K L L R E 0 1 0 2 0 0 1 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1897.9785 P51991 P51991 36 52 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 6.1174E-06 58.09 By MS/MS By matching By matching By matching 2 1 1 3 1.205 1.1054 10.861 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0099 1.1488 5.447 2 0 Median 1.4375 1.2592 NaN 1 0 Median 0.93194 1.0073 NaN 1 0 Median 1.2091 1.0837 14.278 3 0 Median 33971000 16331000 17639000 0 0 0 0 0 0 22109000 10802000 11307000 1671700 648500 1023200 2813900 1611700 1202200 7376000 3268900 4107100 17742 2446 18488 92237;92238;92239;92240;92241;92242;92243 93962;93963;93964 93963 3 KLFIGGLSFETTDDSLREHFEK RGEEGHDPKEPEQLRKLFIGGLSFETTDDS SFETTDDSLREHFEKWGTLTDCVVMRDPQT R K L E K W 0 1 0 2 0 0 3 2 1 1 3 2 0 3 0 2 2 0 0 0 0 0 22 2 2568.286 P51991 P51991 36 57 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 4 8.4041E-07 40.756 By MS/MS By MS/MS By matching 2 3 2 1.0049 1.1034 17.833 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0687 1.2042 16.391 2 0 Median NaN NaN NaN 0 0 Median 0.99253 1.1354 21.396 3 0 Median 1.0532 0.98103 NaN 1 0 Median 40682000 20768000 19915000 0 0 0 0 0 0 14005000 6743600 7261000 0 0 0 25110000 13386000 11724000 1567600 638160 929440 17743 2446 18489 92244;92245;92246;92247;92248;92249;92250 93965;93966;93967;93968 93966 4 KLFIGGLSFETTDESLR ______________________________ FIGGLSFETTDESLRSHFEQWGTLTDCVVM R K L L R S 0 1 0 1 0 0 2 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1911.9942 P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;F8W646 P09651 15 31 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 7.7029E-24 184.21 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 6 4 10 9 1.0603 1.0976 14.376 36 Median 1.1864 1.2167 43.385 2 0 Median 1.1825 1.1153 10.563 5 0 Median 1.0177 1.1104 3.2045 6 0 Median 1.2106 1.0448 6.5353 4 0 Median 1.049 1.1717 12.592 10 0 Median 1.0824 0.95406 14.271 9 0 Median 958610000 454720000 503890000 1756000 778410 977630 26566000 12677000 13889000 297740000 145730000 152010000 178800000 80821000 97982000 295170000 138710000 156460000 158570000 75997000 82577000 17744 1919 18490 92251;92252;92253;92254;92255;92256;92257;92258;92259;92260;92261;92262;92263;92264;92265;92266;92267;92268;92269;92270;92271;92272;92273;92274;92275;92276;92277;92278;92279;92280;92281;92282;92283;92284;92285;92286 93969;93970;93971;93972;93973;93974;93975;93976;93977;93978;93979;93980;93981;93982;93983;93984;93985;93986;93987;93988;93989;93990;93991;93992;93993;93994;93995;93996 93984 28 KLFIGGLSFETTEESLR TVPLERKKREKEQFRKLFIGGLSFETTEES FIGGLSFETTEESLRNYYEQWGKLTDCVVM R K L L R N 0 1 0 0 0 0 3 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1926.0098 P22626;A0A087WUI2 P22626 22 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 6.6301E-11 96.734 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 7 5 1.0913 1.078 10.519 17 Median NaN NaN NaN 0 0 Median 1.0913 1.0274 NaN 1 0 Median 1.0268 1.1105 17.818 3 1 Median 1.1806 1.018 NaN 1 0 Median 1.0378 1.141 7.7671 7 2 Median 1.1881 1.0583 4.1693 5 0 Median 404960000 187660000 217300000 0 0 0 6996200 3260600 3735700 94566000 44165000 50400000 22049000 10184000 11865000 164990000 78521000 86468000 116360000 51533000 64829000 17745 2103 18491 92287;92288;92289;92290;92291;92292;92293;92294;92295;92296;92297;92298;92299;92300;92301;92302;92303 93997;93998;93999;94000;94001;94002;94003;94004;94005;94006;94007;94008;94009;94010;94011;94012;94013 94001 17 KLFIGMISK MKPADSEKNNAVEDRKLFIGMISKKCTEND NAVEDRKLFIGMISKKCTENDIRVMFSSFG R K L S K K 0 0 0 0 0 0 0 1 0 2 1 2 1 1 0 1 0 0 0 0 0 0 9 1 1035.6151 G5EA30;Q92879 G5EA30 136 144 CELF1 CUGBP Elav-like family member 1 yes no 2 0.012948 53.756 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.0928 1.108 25.578 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0454 1.0904 NaN 1 0 Median 1.1264 1.1259 9.9896 3 0 Median 1.1169 1.1911 NaN 1 0 Median 0.70712 0.63022 NaN 1 0 Median 40997000 20122000 20875000 0 0 0 0 0 0 15419000 7675800 7743400 22515000 11067000 11448000 2312300 1038800 1273500 750200 339850 410350 17746 1133 18492;18493 92304;92305;92306;92307;92308;92309 94014;94015;94016;94017;94018 94018 376 5 KLFLVQLQEK YPYIPAHITKPKEHKKLFLVQLQEKALFAV PKEHKKLFLVQLQEKALFAVPKNYKLVAAP K K L E K A 0 0 0 0 0 2 1 0 0 0 3 2 0 1 0 0 0 0 0 1 0 0 10 1 1244.7493 O43809;H3BND3 O43809 173 182 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2;3 8.0467E-05 85.807 By matching By matching By MS/MS By MS/MS By matching 2 1 2 2 2 1.1179 1.0944 14.763 9 Median 0.88401 0.89977 21.642 2 0 Median 1.1925 1.0944 NaN 1 0 Median 0.98536 0.97963 1.0949 2 0 Median 1.3004 1.1709 6.5158 2 0 Median 1.1447 1.2109 2.7329 2 0 Median NaN NaN NaN 0 0 Median 84748000 41432000 43316000 9260200 4733000 4527200 736490 350400 386090 59388000 29634000 29754000 10905000 4586900 6317800 4458400 2128000 2330400 0 0 0 17747 1592 18494 92310;92311;92312;92313;92314;92315;92316;92317;92318 94019;94020;94021;94022;94023;94024 94021 6 KLFNLSK TVPRRLGPKRASRIRKLFNLSKEDDVRQYV PKRASRIRKLFNLSKEDDVRQYVVRKPLNK R K L S K E 0 0 1 0 0 0 0 0 0 0 2 2 0 1 0 1 0 0 0 0 0 0 7 1 848.51199 P62753;A2A3R5 P62753 143 149 RPS6 40S ribosomal protein S6 yes no 2 0.0028294 120.62 By MS/MS By MS/MS By matching 1 1 1 1.1425 1.0282 22.402 3 Median 1.0179 0.98344 NaN 1 0 Median 1.1425 1.0282 NaN 1 0 Median 1.4106 1.4794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81944000 39164000 42780000 43968000 21213000 22755000 35173000 16678000 18496000 2802600 1272700 1529900 0 0 0 0 0 0 0 0 0 17748 2596 18495 92319;92320;92321 94025;94026;94027;94028 94025 4 KLFNLSKEDDVR TVPRRLGPKRASRIRKLFNLSKEDDVRQYV RIRKLFNLSKEDDVRQYVVRKPLNKEGKKP R K L V R Q 0 1 1 2 0 0 1 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 12 2 1462.778 P62753;A2A3R5 P62753 143 154 RPS6 40S ribosomal protein S6 yes no 3 1.969E-05 94.402 By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 1.2332 1.24 32.216 7 Median 1.0451 1.1096 15.717 2 0 Median 1.763 1.6767 37.451 2 1 Median 1.0715 1.3136 51.53 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2777 1.1567 NaN 1 0 Median 43558000 17824000 25734000 20113000 8907600 11206000 17085000 6139000 10946000 3255200 1625400 1629800 0 0 0 0 0 0 3104700 1152300 1952400 17749 2596 18496 92322;92323;92324;92325;92326;92327;92328 94029;94030;94031;94032;94033;94034;94035 94033 7 KLFTSTGLK LSSQERMKVQGSPLKKLFTSTGLKKLSGKK QGSPLKKLFTSTGLKKLSGKKQKGKRGGGD K K L L K K 0 0 0 0 0 0 0 1 0 0 2 2 0 1 0 1 2 0 0 0 0 0 9 1 993.58588 Q02952 Q02952 518 526 AKAP12 A-kinase anchor protein 12 yes yes 2 0.045328 44.203 By MS/MS 1 1.281 1.2193 NaN 1 Median NaN NaN NaN 0 0 Median 1.281 1.2193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3673200 1503900 2169300 0 0 0 3673200 1503900 2169300 0 0 0 0 0 0 0 0 0 0 0 0 17750 2705 18497 92329 94036 94036 1 KLFVGGIKEDTEEHHLR AREESGKPGAHVTVKKLFVGGIKEDTEEHH FVGGIKEDTEEHHLRDYFEEYGKIDTIEII K K L L R D 0 1 0 1 0 0 3 2 2 1 2 2 0 1 0 0 1 0 0 1 0 0 17 2 2007.0538 P22626;A0A087WUI2 P22626 113 129 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3;4;5 2.8479E-19 178.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 18 19 25 32 1.1 1.1349 18.342 110 Median NaN NaN NaN 0 0 Median 1.1 1.1845 27.792 16 0 Median 0.96472 1.0863 10.579 18 0 Median 1.1946 1.1948 6.8546 19 2 Median 1.0106 1.1645 18.329 25 0 Median 1.2195 1.1119 18.332 32 0 Plateau 2868000000 1325400000 1542600000 0 0 0 28973000 13093000 15880000 1377700000 656390000 721340000 479560000 208720000 270850000 369450000 178540000 190910000 612310000 268700000 343610000 17751 2103 18498 92330;92331;92332;92333;92334;92335;92336;92337;92338;92339;92340;92341;92342;92343;92344;92345;92346;92347;92348;92349;92350;92351;92352;92353;92354;92355;92356;92357;92358;92359;92360;92361;92362;92363;92364;92365;92366;92367;92368;92369;92370;92371;92372;92373;92374;92375;92376;92377;92378;92379;92380;92381;92382;92383;92384;92385;92386;92387;92388;92389;92390;92391;92392;92393;92394;92395;92396;92397;92398;92399;92400;92401;92402;92403;92404;92405;92406;92407;92408;92409;92410;92411;92412;92413;92414;92415;92416;92417;92418;92419;92420;92421;92422;92423;92424;92425;92426;92427;92428;92429;92430;92431;92432;92433;92434;92435;92436;92437;92438;92439 94037;94038;94039;94040;94041;94042;94043;94044;94045;94046;94047;94048;94049;94050;94051;94052;94053;94054;94055;94056;94057;94058;94059;94060;94061;94062;94063;94064;94065;94066;94067;94068;94069;94070;94071;94072;94073;94074;94075;94076;94077;94078;94079;94080;94081;94082;94083;94084;94085;94086;94087;94088;94089;94090;94091;94092;94093;94094;94095;94096;94097;94098;94099;94100;94101;94102;94103;94104;94105;94106;94107;94108;94109;94110;94111;94112;94113;94114;94115;94116;94117;94118;94119;94120;94121;94122;94123;94124;94125;94126;94127;94128;94129;94130;94131;94132;94133;94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144;94145;94146;94147;94148;94149;94150;94151;94152;94153;94154;94155;94156;94157;94158;94159;94160;94161;94162;94163;94164;94165;94166;94167;94168;94169;94170;94171;94172;94173;94174;94175;94176;94177;94178;94179;94180;94181;94182;94183;94184;94185;94186;94187;94188;94189;94190;94191;94192;94193;94194;94195;94196;94197;94198;94199;94200;94201;94202;94203;94204;94205;94206;94207;94208;94209;94210;94211;94212;94213;94214;94215;94216;94217;94218;94219 94163 182 KLFVGGLK SREDSARPGAHAKVKKLFVGGLKGDVAEGD GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF K K L L K G 0 0 0 0 0 0 0 2 0 0 2 2 0 1 0 0 0 0 0 1 0 0 8 1 860.54837 Q13151 Q13151 99 106 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.0042378 102.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 10 9 13 8 1.24 1.1192 18.594 51 Median 1.2626 1.2309 21.147 4 0 Median 1.2423 1.1189 19.995 7 0 Median 1.0519 1.1156 14.878 10 0 Median 1.3055 1.1463 10.622 9 0 Median 1.0742 1.1159 22.816 13 1 Median 1.3489 1.1695 17.664 8 0 Median 941260000 438530000 502740000 11114000 4790400 6323900 35079000 15458000 19622000 336150000 163240000 172910000 125570000 54756000 70817000 302350000 144310000 158050000 130990000 55979000 75013000 17752 2790 18499 92440;92441;92442;92443;92444;92445;92446;92447;92448;92449;92450;92451;92452;92453;92454;92455;92456;92457;92458;92459;92460;92461;92462;92463;92464;92465;92466;92467;92468;92469;92470;92471;92472;92473;92474;92475;92476;92477;92478;92479;92480;92481;92482;92483;92484;92485;92486;92487;92488;92489;92490 94220;94221;94222;94223;94224;94225;94226;94227;94228;94229;94230;94231;94232;94233;94234;94235;94236;94237;94238;94239;94240;94241;94242;94243;94244;94245;94246;94247;94248;94249;94250;94251;94252;94253;94254;94255;94256;94257;94258;94259;94260;94261;94262;94263;94264;94265;94266;94267;94268;94269;94270;94271;94272;94273 94251 54 KLFVIAQK QKQYNCLTQRIEREKKLFVIAQKIQTRKDL QRIEREKKLFVIAQKIQTRKDLMDKTQKVK K K L Q K I 1 0 0 0 0 1 0 0 0 1 1 2 0 1 0 0 0 0 0 1 0 0 8 1 945.60114 Q9Y3A2 Q9Y3A2 211 218 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.063498 35.88 By matching By MS/MS 1 1 1.3216 1.2525 16.771 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3385 1.4102 NaN 1 0 Median 1.305 1.1124 NaN 1 0 Median 6073100 2054100 4019000 0 0 0 0 0 0 0 0 0 0 0 0 4702300 1455600 3246700 1370800 598560 772260 17753 4410 18500 92491;92492 94274 94274 1 KLFVQDLATR EETVAKELQTLHNLRKLFVQDLATRVKKSA LHNLRKLFVQDLATRVKKSAEIDSDDTGGS R K L T R V 1 1 0 1 0 1 0 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 1 1189.6819 P33176 P33176 801 810 KIF5B Kinesin-1 heavy chain yes yes 2;3 0.000497 84.213 By MS/MS By MS/MS By MS/MS 2 1 1 1.2251 1.278 10.957 3 Median 1.2251 1.278 NaN 1 0 Median 1.1414 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3527 1.2999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35691000 15182000 20509000 27899000 11603000 16296000 6600300 3171800 3428400 0 0 0 1191100 406280 784830 0 0 0 0 0 0 17754 2221 18501 92493;92494;92495;92496 94275;94276;94277;94278 94275 4 KLFYSTFATDDRK AAFEMTLTEGSKLEKKLFYSTFATDDRKEG EKKLFYSTFATDDRKEGMTAFVEKRKANFK K K L R K E 1 1 0 2 0 0 0 0 0 0 1 2 0 2 0 1 2 0 1 0 0 0 13 2 1590.8042 P30084 P30084 261 273 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 1.0156E-05 134.61 By MS/MS By MS/MS By MS/MS 2 2 1 1.0121 1.0379 5.0126 5 Median 0.99324 1.0576 2.6626 2 0 Median 1.2056 1.0453 8.6878 2 0 Median 0.8973 1.0046 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 236850000 124120000 112720000 191600000 102800000 88805000 32309000 14279000 18029000 12934000 7044800 5889500 0 0 0 0 0 0 0 0 0 17755 2186 18502 92497;92498;92499;92500;92501 94279;94280;94281;94282;94283;94284;94285;94286 94284 8 KLGEMWNNLNDSEK IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ KKLGEMWNNLNDSEKQPYITKAAKLKEKYE K K L E K Q 0 0 3 1 0 0 2 1 0 0 2 2 1 0 0 1 0 1 0 0 0 0 14 1 1676.7828 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 126 139 HMGB3 High mobility group protein B3 yes no 2;3 3.4025E-11 125.82 By MS/MS By MS/MS 2 1 0.86564 0.86197 12.32 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82425 0.82061 6.9551 2 2 Median 1.1085 0.99795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29070000 16301000 12770000 0 0 0 0 0 0 26413000 15405000 11008000 2657700 895530 1762100 0 0 0 0 0 0 17756 880 18503 92502;92503;92504 94287;94288;94289 94287 3 KLGEMWNNLNDSEKQPYITK IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ WNNLNDSEKQPYITKAAKLKEKYEKDVADY K K L T K A 0 0 3 1 0 1 2 1 0 1 2 3 1 0 1 1 1 1 1 0 0 0 20 2 2407.1842 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 126 145 HMGB3 High mobility group protein B3 yes no 3;4 8.1482E-06 45.369 By MS/MS By matching By MS/MS By MS/MS 2 1 2 3 0.98737 1.0057 23.697 8 Median 0.7567 0.79913 3.131 2 0 Median 1.3387 1.31 NaN 1 0 Median 0.81343 0.91782 14.952 2 0 Median 1.2694 1.1672 20.735 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68488000 36791000 31696000 30238000 18654000 11584000 500020 228580 271440 18130000 9215800 8914600 19619000 8692800 10927000 0 0 0 0 0 0 17757 880 18504;18505 92505;92506;92507;92508;92509;92510;92511;92512 94290;94291;94292;94293;94294 94292 320 5 KLGEMWNNTAADDKQPYEK IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ MWNNTAADDKQPYEKKAAKLKEKYEKDIAA K K L E K K 2 0 2 2 0 1 2 1 0 0 1 3 1 0 1 0 1 1 1 0 0 0 19 2 2237.0423 P09429;Q5T7C4 P09429 128 146 HMGB1 High mobility group protein B1 yes no 3;4 3.7298E-25 174.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 9 9 5 0.90225 0.91198 17.965 34 Median 0.81045 0.84659 29.135 7 0 Median 0.94272 0.92251 4.353 4 0 Median 0.83725 0.92038 13.319 9 0 Median 0.98258 0.92891 10.017 9 1 Median NaN NaN NaN 0 0 Median 1.0111 0.91465 15.784 5 0 Median 620960000 318650000 302310000 102110000 57072000 45035000 38185000 19409000 18776000 233420000 121770000 111650000 230030000 111980000 118050000 0 0 0 17216000 8415900 8800600 17758 1915 18506;18507 92513;92514;92515;92516;92517;92518;92519;92520;92521;92522;92523;92524;92525;92526;92527;92528;92529;92530;92531;92532;92533;92534;92535;92536;92537;92538;92539;92540;92541;92542;92543;92544;92545;92546 94295;94296;94297;94298;94299;94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316;94317;94318;94319;94320;94321;94322;94323;94324;94325;94326;94327;94328;94329;94330 94328 693 36 KLGEMWSEQSAK IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ TAKKLGEMWSEQSAKDKQPYEQKAAKLKEK K K L A K D 1 0 0 0 0 1 2 1 0 0 1 2 1 0 0 2 0 1 0 0 0 0 12 1 1392.6708 P26583 P26583 128 139 HMGB2 High mobility group protein B2 yes yes 2;3 4.0994E-30 209.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 5 6 3 3 1.1709 1.1003 13.831 22 Median 1.0085 1.0251 18.114 4 0 Median 1.2452 1.1387 4.1138 2 0 Median 1.077 1.0698 9.9423 5 0 Median 1.2416 1.1054 11.996 6 0 Median 1.257 1.3453 12.777 3 0 Plateau 1.3538 1.1749 10.385 2 0 Median 682290000 320530000 361760000 71131000 34424000 36707000 7642200 3352800 4289400 387170000 183950000 203210000 165210000 72568000 92641000 24835000 11704000 13130000 26303000 14523000 11779000 17759 2146 18508;18509 92547;92548;92549;92550;92551;92552;92553;92554;92555;92556;92557;92558;92559;92560;92561;92562;92563;92564;92565;92566;92567;92568;92569 94331;94332;94333;94334;94335;94336;94337;94338;94339;94340;94341;94342;94343;94344;94345;94346;94347;94348;94349;94350;94351;94352;94353;94354;94355;94356;94357;94358;94359 94336 909 29 KLGEMWSEQSAKDK IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ KKLGEMWSEQSAKDKQPYEQKAAKLKEKYE K K L D K Q 1 0 0 1 0 1 2 1 0 0 1 3 1 0 0 2 0 1 0 0 0 0 14 2 1635.7927 P26583 P26583 128 141 HMGB2 High mobility group protein B2 yes yes 3 3.2778E-06 90.476 By MS/MS 1 1.2896 1.1858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2896 1.1858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4800000 1776800 3023300 0 0 0 0 0 0 0 0 0 4800000 1776800 3023300 0 0 0 0 0 0 17760 2146 18510 92570 94360;94361 94361 2 KLGGSLADSYLDEGFLLDK RLKGSGNLEAIHIIKKLGGSLADSYLDEGF SLADSYLDEGFLLDKKIGVNQPKRIENAKI K K L D K K 1 0 0 3 0 0 1 3 0 0 5 2 0 1 0 2 0 0 1 0 0 0 19 1 2040.0415 P78371;F5GWF6;F8VQ14 P78371 204 222 CCT2 T-complex protein 1 subunit beta yes no 3 0.0005427 30.684 By MS/MS By matching 1 1 1.0777 1.0764 8.6086 2 Median 1.0631 1.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0925 1.1439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7047200 3239500 3807700 1911800 939260 972510 0 0 0 5135400 2300300 2835200 0 0 0 0 0 0 0 0 0 17761 2644 18511 92571;92572 94362;94363 94362 2 KLGGSLADSYLDEGFLLDKK RLKGSGNLEAIHIIKKLGGSLADSYLDEGF LADSYLDEGFLLDKKIGVNQPKRIENAKIL K K L K K I 1 0 0 3 0 0 1 3 0 0 5 3 0 1 0 2 0 0 1 0 0 0 20 2 2168.1365 P78371;F5GWF6;F8VQ14 P78371 204 223 CCT2 T-complex protein 1 subunit beta yes no 3 3.6723E-09 81.967 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0699 1.0129 19.445 5 Median 1.0575 1.0536 9.0641 2 0 Median 1.0699 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4001 1.4611 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8888 0.87056 NaN 1 0 Median 28812000 14275000 14536000 9526500 4633000 4893500 18786000 9429400 9356900 0 0 0 84723 32243 52480 0 0 0 414070 180490 233580 17762 2644 18512 92573;92574;92575;92576;92577 94364;94365;94366;94367 94367 4 KLGGSQEDQIK PAYQELVEEAIAYGRKLGGSQEDQIKNAID AYGRKLGGSQEDQIKNAIDKLFVLFGAEIL R K L I K N 0 0 0 1 0 2 1 2 0 1 1 2 0 0 0 1 0 0 0 0 0 0 11 1 1201.6303 P37837;F2Z393 P37837 71 81 TALDO1 Transaldolase yes no 2;3 0.04761 30.254 By matching By MS/MS 3 4 1.2732 1.1586 10.837 7 Median 1.2122 1.1331 8.7955 3 0 Plateau 1.4134 1.2722 5.6331 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2404700 1003900 1400800 426740 194500 232230 1978000 809430 1168600 0 0 0 0 0 0 0 0 0 0 0 0 17763 2270 18513 92578;92579;92580;92581;92582;92583;92584 94368;94369 94368 2 KLGINDIEGQR TSGEWIWESLFHPPRKLGINDIEGQRVLQI HPPRKLGINDIEGQRVLQIAVILRNLSFEE R K L Q R V 0 1 1 1 0 1 1 2 0 2 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1241.6728 Q68CP9;F8WCU9 Q68CP9 275 285 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.0008951 69.721 By MS/MS 1 1.1169 1.3394 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1169 1.3394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5082600 2402200 2680500 0 0 0 0 0 0 5082600 2402200 2680500 0 0 0 0 0 0 0 0 0 17764 3122 18514 92585 94370 94370 1 KLGINSLQELK QVLAAKEKHLAEIKRKLGINSLQELKQNIA EIKRKLGINSLQELKQNIAKGWQDVTATSA R K L L K Q 0 0 1 0 0 1 1 1 0 1 3 2 0 0 0 1 0 0 0 0 0 0 11 1 1241.7343 H0YC42;E5RFR7;H0YC44;P55327 H0YC42 110 120 TPD52 Tumor protein D52 no no 2;3 4.7202E-05 103.08 By MS/MS By matching 2 2 0.92365 0.89145 18.155 4 Median 0.83327 0.84681 5.5132 2 0 Median 1.1489 1.0538 21.912 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30415000 16406000 14008000 28391000 15410000 12981000 2023800 996160 1027600 0 0 0 0 0 0 0 0 0 0 0 0 17765 1172;2499 18515 92586;92587;92588;92589 94371;94372 94372 2 KLGLGTAYIHGMK KIYGSDRILLRPREKKLGLGTAYIHGMKHA EKKLGLGTAYIHGMKHATGNYIIIMDADLS K K L M K H 1 0 0 0 0 0 0 3 1 1 2 2 1 0 0 0 1 0 1 0 0 0 13 1 1387.7646 Q5QPK2;H0Y368;O60762;Q5QPJ9 Q5QPK2 95 107 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 3 0.00069537 46.132 By MS/MS By matching 1 1 0.90466 0.9179 18.502 2 Median 1.0295 1.0462 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79495 0.80534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15903000 8213300 7689500 14158000 7279100 6878600 0 0 0 1745100 934220 810900 0 0 0 0 0 0 0 0 0 17766 1142 18516 92590;92591 94373;94374 94374 2 KLGLTMQYPEGYLEALANR DEPGPWTKEGKDRIKKLGLTMQYPEGYLEA TMQYPEGYLEALANREREKENSKREEEEQQ K K L N R E 2 1 1 0 0 1 2 2 0 0 4 1 1 0 1 0 1 0 2 0 0 0 19 1 2166.1143 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 613 631 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.058594 16.752 By MS/MS 1 1.5643 1.7785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5643 1.7785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2269900 860760 1409200 0 0 0 0 0 0 2269900 860760 1409200 0 0 0 0 0 0 0 0 0 17767 20 18517 92592 94375 94375 1 KLGMIAGGTGITPMLQLIR IQPNKKSPPEPRVAKKLGMIAGGTGITPML IAGGTGITPMLQLIRAILKVPEDPTQCFLL K K L I R A 1 1 0 0 0 1 0 4 0 3 3 1 2 0 1 0 2 0 0 0 0 0 19 1 1969.1217 Q9UHQ9;H7C0R7 Q9UHQ9 178 196 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 3 9.7722E-10 79.311 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17768 4280 18518 92593 94376 94376 1 KLGNSLLR DRRQSMAFSILNTPKKLGNSLLRRGASKKA SILNTPKKLGNSLLRRGASKKALSKASPNT K K L L R R 0 1 1 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 1 899.55525 A0A087WY61;Q14980 Q14980 2058 2065 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00334 114.43 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 3 2 3 0.93061 1.0384 13.044 11 Median NaN NaN NaN 0 0 Median 0.93061 0.88556 NaN 1 0 Median 0.87867 1.0121 12.795 2 0 Median 1.1895 1.1225 10.953 3 0 Median 0.88447 1.0254 4.0005 2 0 Median 1.0486 0.93149 13.892 3 0 Median 58074000 29176000 28898000 0 0 0 2486100 1245600 1240500 16955000 8614600 8340500 3680100 1751700 1928400 24919000 13093000 11825000 10034000 4470700 5563000 17769 2905;77 18519 92594;92595;92596;92597;92598;92599;92600;92601;92602;92603;92604 94377;94378;94379;94380;94381;94382 94378 6 KLGTSGLNQPTFQQSK ALGLPAVNNDPFVQRKLGTSGLNQPTFQQS LGTSGLNQPTFQQSKMKPSDLSQVWPEANQ R K L S K M 0 0 1 0 0 3 0 2 0 0 2 2 0 1 1 2 2 0 0 0 0 0 16 1 1732.9108 A5YKK6;H3BR89;H3BMH0 A5YKK6 808 823 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 3 3.3285E-05 62.861 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.0251 0.99451 19.962 5 Median 1.282 1.2705 NaN 1 0 Median 1.0251 0.99451 NaN 1 0 Median 0.69703 0.80066 NaN 1 0 Median 1.2133 1.1356 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92447 0.82497 NaN 1 1 Median 12148000 5788300 6359300 4099300 1986600 2112700 1996500 1048300 948170 2509900 1221300 1288700 1485200 659570 825620 0 0 0 2056700 872530 1184100 17770 503 18520 92605;92606;92607;92608;92609 94383;94384;94385 94384 2 KLHAVVETLVNHR EEKLQEVECEEQRLRKLHAVVETLVNHRKE LRKLHAVVETLVNHRKELALNTAQFAKSLA R K L H R K 1 1 1 0 0 0 1 0 2 0 2 1 0 0 0 0 1 0 0 3 0 0 13 1 1514.8681 Q13596;H0YK42 Q13596 325 337 SNX1 Sorting nexin-1 yes no 3 0.00065439 61.423 By MS/MS 1 0.46363 0.4237 NaN 1 Median NaN NaN NaN 0 0 Median 0.46363 0.4237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6072500 3959800 2112700 0 0 0 6072500 3959800 2112700 0 0 0 0 0 0 0 0 0 0 0 0 17771 2829 18521 92610 94386 94386 1 KLHDFQDEIVENSVTK QLADDLKAQLELAQKKLHDFQDEIVENSVT LHDFQDEIVENSVTKEKDMFNFKRAQEDIS K K L T K E 0 0 1 2 0 1 2 0 1 1 1 2 0 1 0 1 1 0 0 2 0 0 16 1 1900.9531 Q5VTR2 Q5VTR2 857 872 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 9.957E-11 106.6 By matching By MS/MS By MS/MS 1 1 1 0.89532 1.0413 50.973 3 Median NaN NaN NaN 0 0 Median 1.7164 1.6152 NaN 1 0 Median 0.89532 1.0413 NaN 1 0 Median 0.61369 0.58459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24681000 12996000 11685000 0 0 0 903320 394920 508400 19392000 10242000 9149800 4385600 2358700 2026900 0 0 0 0 0 0 17772 3112 18522 92611;92612;92613 94387;94388;94389;94390 94388 4 KLHELTVMQDR VEHEKLKATDQEKSRKLHELTVMQDRREQA EKSRKLHELTVMQDRREQARQDLKGLEETV R K L D R R 0 1 0 1 0 1 1 0 1 0 2 1 1 0 0 0 1 0 0 1 0 0 11 1 1368.7184 P33176 P33176 764 774 KIF5B Kinesin-1 heavy chain yes yes 2;3 2.8805E-05 120.57 By MS/MS By MS/MS By MS/MS 2 3 2 1.153 1.0845 3.534 7 Median 1.0567 1.096 6.0394 2 1 Median 1.181 1.0845 0.37645 3 0 Plateau NaN NaN NaN 0 0 Median 1.1274 1.0834 6.0492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64494000 28511000 35983000 7310800 3443500 3867300 53286000 23304000 29982000 0 0 0 3896700 1763100 2133500 0 0 0 0 0 0 17773 2221 18523;18524 92614;92615;92616;92617;92618;92619;92620 94391;94392;94393;94394;94395;94396;94397;94398 94393 960 8 KLHELTVMQDRR VEHEKLKATDQEKSRKLHELTVMQDRREQA KSRKLHELTVMQDRREQARQDLKGLEETVA R K L R R E 0 2 0 1 0 1 1 0 1 0 2 1 1 0 0 0 1 0 0 1 0 0 12 2 1524.8195 P33176 P33176 764 775 KIF5B Kinesin-1 heavy chain yes yes 3 0.038688 20.204 By MS/MS 1 0.91197 0.98225 NaN 1 Median 0.91197 0.98225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2935900 1461400 1474500 2935900 1461400 1474500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17774 2221 18525 92621 94399 94399 1 KLHESLEEIR LSMQSVRMDNFQLTKKLHESLEEIRIVAKE FQLTKKLHESLEEIRIVAKERDELRRIKES K K L I R I 0 1 0 0 0 0 3 0 1 1 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1252.6776 Q02224;A0A087X0P0 Q02224 2026 2035 CENPE Centromere-associated protein E;Kinesin-like protein yes no 3 0.038205 18.268 By MS/MS 1 1.8552 1.6898 NaN 1 Median NaN NaN NaN 0 0 Median 1.8552 1.6898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12747000 4799600 7947600 0 0 0 12747000 4799600 7947600 0 0 0 0 0 0 0 0 0 0 0 0 17775 107 18526 92622 94400 94400 1 KLHGTAQQLLQDSK ENMIQMYSNGSSKDRKLHGTAQQLLQDSKT RKLHGTAQQLLQDSKTKIEVIRMQILQAVQ R K L S K T 1 0 0 1 0 3 0 1 1 0 3 2 0 0 0 1 1 0 0 0 0 0 14 1 1565.8526 Q16513;B1AL79 Q16513 171 184 PKN2 Serine/threonine-protein kinase N2 yes no 3 0.065221 17.962 By MS/MS 1 0.34313 0.32686 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34313 0.32686 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052700 3455600 597170 0 0 0 0 0 0 0 0 0 4052700 3455600 597170 0 0 0 0 0 0 17776 2982 18527 92623 94401 94401 1 KLHLYEQGGR SFLPCSKDALLKRARKLHLYEQGGRLKEPL LKRARKLHLYEQGGRLKEPLQKLKEAIGRA R K L G R L 0 1 0 0 0 1 1 2 1 0 2 1 0 0 0 0 0 0 1 0 0 0 10 1 1199.6411 Q9NPG3 Q9NPG3 431 440 UBN1 Ubinuclein-1 yes yes 3 0.029191 21.372 By MS/MS 1 1.3243 1.2727 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3243 1.2727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 409410 204730 204680 0 0 0 0 0 0 0 0 0 409410 204730 204680 0 0 0 0 0 0 17777 4051 18528 92624 94402 94402 1 KLHYNEGLNIK SPEEREKKRQFEMKRKLHYNEGLNIKLARQ EMKRKLHYNEGLNIKLARQLISKDLHDDDE R K L I K L 0 0 2 0 0 0 1 1 1 1 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1327.7248 E7EMN6;Q6NXS1;P41236 E7EMN6 119 129 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 yes no 3 0.0028509 37.968 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.91613 0.89108 22.797 4 Median 1.2078 1.1761 NaN 1 0 Median 0.99183 0.89382 NaN 1 0 Median 0.8462 0.88835 NaN 1 0 Median 0.76634 0.6729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13037000 5997200 7039600 8216100 3633900 4582200 1766400 709850 1056600 2042600 1158100 884540 1011700 495410 516240 0 0 0 0 0 0 17778 857 18529 92625;92626;92627;92628 94403;94404;94405;94406 94403 4 KLIELQAGKK ILIEDWKKAREEKQKKLIELQAGKKSLEDQ EEKQKKLIELQAGKKSLEDQVEMLRTVKEE K K L K K S 1 0 0 0 0 1 1 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 10 2 1126.7074 K7ELL7;P14314;K7EPW7 K7ELL7 158 167 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0014052 87.639 By matching By MS/MS 1 1 1.1254 1.114 15.263 2 Median 0.97996 1 NaN 1 0 Median 1.2925 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6504900 2997800 3507100 3138200 1526500 1611800 3366600 1471300 1895300 0 0 0 0 0 0 0 0 0 0 0 0 17779 1378 18530 92629;92630 94407 94407 1 KLIHLEIKPAIR VFKVSHKPSGLVMARKLIHLEIKPAIRNQI MARKLIHLEIKPAIRNQIIRELQVLHECNS R K L I R N 1 1 0 0 0 0 1 0 1 3 2 2 0 0 1 0 0 0 0 0 0 0 12 2 1429.9133 P36507;A0A1B0GUL7;G5E9C7;Q02750 Q02750 97 108 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 3 0.00020508 65.563 By matching By MS/MS By matching 1 1 1 0.84481 0.96855 24.977 3 Median NaN NaN NaN 0 0 Median 0.81029 0.96855 NaN 1 0 Median 1.1541 1.2939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84481 0.78694 NaN 1 0 Median 11936000 6322500 5613100 0 0 0 1086900 541480 545410 3812400 1919600 1892800 0 0 0 0 0 0 7036400 3861400 3174900 17780 2256;2700 18531 92631;92632;92633 94408 94408 1 KLILDSAR NIRVLDPFTIKPLDRKLILDSARATKGRIL TIKPLDRKLILDSARATKGRILTVEDHYYE R K L A R A 1 1 0 1 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 1 914.55492 P29401;A0A0B4J1R6 P29401 543 550 TKT Transketolase yes no 2 0.0032585 110.81 By MS/MS By MS/MS By MS/MS 4 6 1 1.0866 1.0555 11.228 11 Median 1.0624 1.0528 8.0265 4 0 Median 1.2426 1.1111 13.832 6 0 Median NaN NaN NaN 0 0 Median 1.0866 0.99634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78288000 34918000 43371000 27975000 13234000 14741000 48955000 21144000 27812000 0 0 0 1358100 540250 817800 0 0 0 0 0 0 17781 2173 18532 92634;92635;92636;92637;92638;92639;92640;92641;92642;92643;92644 94409;94410;94411;94412;94413 94412 5 KLIQDQQEQIQHLK QHKLDTVSSKIELNRKLIQDQQEQIQHLKS RKLIQDQQEQIQHLKSTTNELKSEKLQIST R K L L K S 0 0 0 1 0 5 1 0 1 2 2 2 0 0 0 0 0 0 0 0 0 0 14 1 1747.9581 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 851 864 RAD50 DNA repair protein RAD50 yes no 3;4 1.3784E-08 131.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 2 2 1.0281 1.0847 14 12 Median 0.92227 0.9213 16.976 2 0 Median 1.2191 1.131 NaN 1 0 Median 0.94077 1.0911 0.46336 2 1 Median 1.1694 1.1139 24.346 3 0 Median 1.0281 1.0912 1.2035 2 0 Median 1.0914 0.97975 12.453 2 0 Median 102900000 50916000 51983000 10336000 4974000 5362000 9474700 4357300 5117400 50823000 26652000 24171000 21131000 9394000 11737000 7688700 4029700 3659100 3445900 1509000 1936900 17782 3561 18533 92645;92646;92647;92648;92649;92650;92651;92652;92653;92654;92655;92656 94414;94415;94416;94417;94418;94419;94420;94421;94422;94423;94424;94425;94426;94427 94421 13 KLIQESDQHLK RTLLKETKFITYRSKKLIQESDQHLKDVEK YRSKKLIQESDQHLKDVEKILQNDKRYLVL K K L L K D 0 0 0 1 0 2 1 0 1 1 2 2 0 0 0 1 0 0 0 0 0 0 11 1 1337.7303 O14776 O14776 1035 1045 TCERG1 Transcription elongation regulator 1 yes yes 3 0.055027 12.631 By matching By matching By MS/MS By matching 1 1 3 1 1.1818 1.0896 14.146 6 Median NaN NaN NaN 0 0 Median 1.5495 1.452 NaN 1 0 Median 0.91849 1.0507 NaN 1 0 Median 1.1302 1.0766 11.638 3 0 Median NaN NaN NaN 0 0 Median 1.2357 1.1027 NaN 1 0 Median 5316900 2405300 2911600 0 0 0 1485500 610000 875510 1406100 738950 667130 2273200 986070 1287100 0 0 0 152080 70310 81774 17783 1494 18534 92657;92658;92659;92660;92661;92662 94428 94428 1 KLIQESDQHLKDVEK RTLLKETKFITYRSKKLIQESDQHLKDVEK KLIQESDQHLKDVEKILQNDKRYLVLDCVP K K L E K I 0 0 0 2 0 2 2 0 1 1 2 3 0 0 0 1 0 0 0 1 0 0 15 2 1808.9632 O14776 O14776 1035 1049 TCERG1 Transcription elongation regulator 1 yes yes 3;4 0.00028004 45.434 By MS/MS By MS/MS 2 3 1.1669 1.195 10.727 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87922 1.0565 7.1032 2 0 Median 1.2486 1.2787 4.5987 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17758000 9122600 8635100 0 0 0 0 0 0 15199000 7874000 7324900 2558800 1248600 1310200 0 0 0 0 0 0 17784 1494 18535 92663;92664;92665;92666;92667 94429;94430;94431;94432;94433;94434 94432 6 KLITDEFVK GLRPGIHHSLFGDVKKLITDEFVKQKYLDY LFGDVKKLITDEFVKQKYLDYARVPNSNPP K K L V K Q 0 0 0 1 0 0 1 0 0 1 1 2 0 1 0 0 1 0 0 1 0 0 9 1 1091.6227 Q9UNF1;Q5H909;Q5H907;A0A087X070;G5E9N2;Q12816 Q9UNF1 414 422 MAGED2;TRO Melanoma-associated antigen D2;Trophinin yes no 2 0.074781 30.318 By MS/MS By matching 2 1 0.99595 0.95396 5.1866 3 Plateau 0.99595 0.98389 4.3689 2 0 Median 0.97623 0.91539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10426000 5157800 5268600 8083200 3838300 4244900 2343100 1319500 1023600 0 0 0 0 0 0 0 0 0 0 0 0 17785 4343 18536 92668;92669;92670 94435 94435 1 KLIVDSVK PIDITVKETKAKRKRKLIVDSVKELDSKTI TKAKRKRKLIVDSVKELDSKTIRAQLSDYS R K L V K E 0 0 0 1 0 0 0 0 0 1 1 2 0 0 0 1 0 0 0 2 0 0 8 1 900.56442 O60216 O60216 323 330 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 0.040523 40.352 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.0622 1.1197 9.8227 6 Median NaN NaN NaN 0 0 Median 1.0248 0.98569 NaN 1 0 Median 1.0548 1.2095 6.3823 2 0 Median 1.1102 1.0845 NaN 1 0 Median 0.90625 1.0134 NaN 1 0 Median 1.3246 1.2038 NaN 1 0 Median 5402800 2664900 2737900 0 0 0 237580 128300 109280 2989700 1420400 1569200 487360 220640 266730 1323600 748610 575040 364530 146900 217630 17786 1603 18537 92671;92672;92673;92674;92675;92676 94436 94436 1 KLIVQPNTR FLTLRDTVLLRKESRKLIVQPNTRLEGSDV LRKESRKLIVQPNTRLEGSDVQLLEYEASA R K L T R L 0 1 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 9 1 1067.6451 G3V1D3;G3V180;Q9NY33 G3V1D3 689 697 DPP3 Dipeptidyl peptidase 3 yes no 2 0.0022514 79.906 By MS/MS By MS/MS 1 1 0.9578 0.96669 5.1213 2 Median 0.98134 1.0023 NaN 1 0 Median 0.93482 0.93231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5563100 2663600 2899500 1923000 988760 934230 3640100 1674800 1965300 0 0 0 0 0 0 0 0 0 0 0 0 17787 1102 18538 92677;92678 94437;94438;94439 94439 3 KLIYFQLHR WALESDNNTALLLSKKLIYFQLHRALKMIV ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K K L H R A 0 1 0 0 0 1 0 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1216.7081 Q13263 Q13263 366 374 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 0.00010925 124.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 4 5 4 1.1762 1.2045 13.38 25 Median 1.0336 1.079 15.028 5 0 Median 1.2885 1.1813 5.8793 4 0 Linear 1.1762 1.1841 7.9469 3 0 Plateau 1.4355 1.3475 4.9097 4 0 Median 1.0794 1.1876 15.052 5 2 Median 1.4195 1.2801 14.276 4 0 Median 188400000 89962000 98439000 77848000 38944000 38903000 8829900 3691000 5139000 49575000 22975000 26600000 5970800 2416000 3554800 39751000 19165000 20587000 6427300 2771900 3655400 17788 2802 18539 92679;92680;92681;92682;92683;92684;92685;92686;92687;92688;92689;92690;92691;92692;92693;92694;92695;92696;92697;92698;92699;92700;92701;92702;92703 94440;94441;94442;94443;94444;94445;94446;94447;94448;94449;94450;94451;94452;94453;94454;94455;94456;94457;94458;94459;94460;94461;94462;94463;94464 94452 24 KLKDYAFVHFEDR LEKSFSEFGKLERVKKLKDYAFVHFEDRGA VKKLKDYAFVHFEDRGAAVKAMDEMNGKEI K K L D R G 1 1 0 2 0 0 1 0 1 0 1 2 0 2 0 0 0 0 1 1 0 0 13 2 1666.8467 O43390;B4DT28 O43390 372 384 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 3;4 0.00042286 54.524 By MS/MS By matching 3 1 1.1443 1.1812 28.134 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1001 1.2585 31.626 3 1 Median 1.1902 1.1087 NaN 1 0 Median 35622000 15707000 19915000 0 0 0 0 0 0 0 0 0 0 0 0 32905000 14496000 18409000 2717100 1211100 1505900 17789 1568 18540 92704;92705;92706;92707 94465;94466;94467 94467 3 KLLAAEPLSK SYWTLAYVISLQGARKLLAAEPLSKMLPVD LQGARKLLAAEPLSKMLPVDEFLPVMFDKH R K L S K M 2 0 0 0 0 0 1 0 0 0 3 2 0 0 1 1 0 0 0 0 0 0 10 1 1068.6543 Q8NBJ5 Q8NBJ5 508 517 COLGALT1 Procollagen galactosyltransferase 1 yes yes 2 0.0018723 66.595 By matching By MS/MS By matching By matching 2 1 1 1 1.0275 0.98767 20.439 5 Median 0.93208 0.92441 9.3615 2 0 Median 1.2269 1.1472 NaN 1 0 Median 1.0275 1.1638 NaN 1 0 Median 0.77453 0.71516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15048000 6854500 8193100 4189900 2110900 2079000 6154700 2492800 3661900 3030800 1443300 1587600 1672100 807560 864560 0 0 0 0 0 0 17790 3404 18541 92708;92709;92710;92711;92712 94468 94468 1 KLLADQAEAR LMEHIHKLKADKARKKLLADQAEARRSKTK DKARKKLLADQAEARRSKTKEARKRREERL K K L A R R 3 1 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1113.6142 J3QR09;J3KTE4;P84098 J3QR09 150 159 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.0087943 49.418 By MS/MS By MS/MS By matching 1 1 1 1.1552 1.2155 49.01 3 Plateau 1.1552 1.2155 NaN 1 0 Median 1.1855 1.1182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54308 0.5004 NaN 1 0 Median 1894400 930000 964430 947150 482950 464200 588340 254430 333900 0 0 0 0 0 0 0 0 0 358940 192610 166330 17791 1335 18542 92713;92714;92715 94469;94470;94471;94472 94471 4 KLLASANLEEVTMK LKKPPTDEELKETIKKLLASANLEEVTMKQ KKLLASANLEEVTMKQICKKVYENYPTYDL K K L M K Q 2 0 1 0 0 0 2 0 0 0 3 2 1 0 0 1 1 0 0 1 0 0 14 1 1545.8436 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 331 344 DEK Protein DEK yes no 2;3 1.2172E-08 124.86 By MS/MS By MS/MS By matching 3 3 2 0.9887 1.0039 16.51 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93807 0.97289 13.357 3 0 Plateau 1.0739 1.02 17.108 3 0 Median 1.0405 1.1248 2.7252 2 0 Median NaN NaN NaN 0 0 Median 79886000 39121000 40765000 0 0 0 0 0 0 60505000 31576000 28929000 16546000 6233500 10313000 2834700 1311100 1523700 0 0 0 17792 1166 18543 92716;92717;92718;92719;92720;92721;92722;92723 94473;94474;94475;94476;94477;94478;94479;94480 94474 8 KLLASLVK DHQYQFLEDAVRNQRKLLASLVKRLGDKHA DAVRNQRKLLASLVKRLGDKHATLQKSTKE R K L V K R 1 0 0 0 0 0 0 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 8 1 870.59024 Q13263;M0R3C0 Q13263 254 261 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.0047531 98.933 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 5 2 2 1.1922 1.1433 20.571 23 Median 0.97391 1.0841 8.9223 4 0 Linear 1.3508 1.2621 13.196 5 0 Median 0.94175 1.031 26.136 5 0 Median 1.4223 1.351 17.076 5 0 Median 1.0438 1.1403 16.085 2 0 Median 1.2644 1.1324 7.1027 2 0 Median 240730000 114840000 125890000 50327000 25231000 25096000 63890000 29184000 34705000 48532000 24791000 23741000 29737000 12374000 17363000 34619000 17294000 17326000 13626000 5961300 7664800 17793 2802 18544 92724;92725;92726;92727;92728;92729;92730;92731;92732;92733;92734;92735;92736;92737;92738;92739;92740;92741;92742;92743;92744;92745;92746 94481;94482;94483;94484;94485;94486;94487;94488;94489;94490;94491;94492;94493;94494;94495;94496;94497;94498;94499;94500 94484 20 KLLDGPSTEKDLDEK EEVTSLAKSLIKSWKKLLDGPSTEKDLDEK KLLDGPSTEKDLDEKKKEPAITSQNSPEAR K K L E K K 0 0 0 3 0 0 2 1 0 0 3 3 0 0 1 1 1 0 0 0 0 0 15 2 1686.8676 A0A1W2PPZ5;P23193;A0A1W2PRL9;E5RIS7 A0A1W2PPZ5 75 89 TCEA1 Transcription elongation factor A protein 1 yes no 3 0.060364 12.201 By MS/MS 1 0.92452 0.87026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92452 0.87026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108000 1602500 1505500 0 0 0 0 0 0 0 0 0 3108000 1602500 1505500 0 0 0 0 0 0 17794 341 18545 92747 94501 94501 1 KLLDIEGLYSK LQADAINAFGESLQKKLLDIEGLYSKVRSR SLQKKLLDIEGLYSKVRSRYSFIQALVRRI K K L S K V 0 0 0 1 0 0 1 1 0 1 3 2 0 0 0 1 0 0 1 0 0 0 11 1 1277.7231 Q92621 Q92621 1978 1988 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00020913 88.596 By MS/MS By matching 1 1 1.3204 1.3709 7.9691 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1174 1.2958 NaN 1 0 Median 1.5602 1.4504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19523000 9138500 10385000 0 0 0 0 0 0 19254000 9025800 10229000 268740 112670 156060 0 0 0 0 0 0 17795 3547 18546 92748;92749 94502;94503 94503 2 KLLDIVAR VQGSTSKHEFQAETKKLLDIVARSLYSEKE EFQAETKKLLDIVARSLYSEKEVFIRELIS K K L A R S 1 1 0 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 1 926.5913 Q12931 Q12931 96 103 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 0.010972 65.88 By MS/MS By MS/MS By matching By matching By matching 3 3 1 1 1 1.2616 1.3174 14.665 9 Median 1.2214 1.2534 11.518 3 0 Median 1.4684 1.3174 6.3927 3 0 Median 1.3608 1.444 NaN 1 0 Median 1.8153 1.6644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1812 1.0379 NaN 1 0 Median 76574000 32444000 44130000 37401000 16727000 20674000 32694000 13071000 19623000 5280900 2148500 3132400 596130 216470 379660 0 0 0 602570 281180 321390 17796 2771 18547 92750;92751;92752;92753;92754;92755;92756;92757;92758 94504;94505;94506 94505 3 KLLDLVQQSCNYK VNPKAYPLADAHLTKKLLDLVQQSCNYKQL TKKLLDLVQQSCNYKQLRKGANEATKTLNR K K L Y K Q 0 0 1 1 1 2 0 0 0 0 3 2 0 0 0 1 0 0 1 1 0 0 13 1 1607.8341 P55769 P55769 21 33 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2 1.1766E-30 208.46 By MS/MS By MS/MS By matching 1 1 1 1.1738 1.1114 16.78 3 Median NaN NaN NaN 0 0 Median 1.5765 1.3667 NaN 1 0 Median 1.095 1.1114 NaN 1 0 Median 1.1738 0.98028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12872000 5462600 7409800 0 0 0 3488900 1254200 2234700 7334100 3359500 3974600 2049300 848820 1200500 0 0 0 0 0 0 17797 2501 18548 92759;92760;92761 94507;94508;94509 94507 3 KLLEAQSHFR KRWSQLLANSAARKKKLLEAQSHFRKVEDL AARKKKLLEAQSHFRKVEDLFLTFAKKASA K K L F R K 1 1 0 0 0 1 1 0 1 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1227.6724 A0A0D9SF54;A0A1B0GUH3;Q13813 Q13813 2078 2087 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.00010281 106.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 3 4 1 1 1.1004 1.0947 19.996 13 Median 1.2573 1.2866 NaN 1 0 Median 1.4771 1.4104 16.212 3 0 Median 0.9236 1.1072 14.124 3 0 Plateau 1.1171 1.066 6.3779 4 0 Median 0.82402 0.93515 NaN 1 0 Median 0.98289 0.8731 NaN 1 0 Median 38340000 17204000 21136000 1859100 739690 1119400 14813000 5907800 8905600 12063000 6130800 5932500 5786600 2604200 3182400 1665400 816530 848840 2151900 1004900 1147000 17798 264;2838 18549 92762;92763;92764;92765;92766;92767;92768;92769;92770;92771;92772;92773;92774;92775 94510;94511;94512;94513;94514;94515;94516;94517;94518;94519;94520;94521;94522;94523;94524 94517 15 KLLEATELK DEVAARMNEVISLWKKLLEATELKGIKLRE VISLWKKLLEATELKGIKLREANQQQQFNR K K L L K G 1 0 0 0 0 0 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 9 1 1043.6227 A0A0D9SF54;Q13813 Q13813 662 670 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00070685 120.27 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 1 2 1.0577 1.0296 25.961 12 Median 1.2068 1.3061 NaN 1 0 Median 1.0536 1.0201 23.718 3 1 Median 0.61769 0.71206 56.472 2 0 Median 1.0812 1.0647 4.7479 3 0 Median 0.96466 1.0392 NaN 1 0 Median 1.0701 0.96036 1.2505 2 0 Median 100230000 46915000 53314000 2812900 1028400 1784500 31912000 14505000 17407000 31961000 15674000 16287000 12206000 5776200 6429800 8795600 4206900 4588700 12541000 5724800 6816300 17799 264;2838 18550 92776;92777;92778;92779;92780;92781;92782;92783;92784;92785;92786;92787 94525;94526;94527;94528;94529;94530;94531;94532;94533;94534;94535;94536;94537;94538;94539;94540 94539 16 KLLEGEEER LDIKLALDMEIHAYRKLLEGEEERLRLSPS EIHAYRKLLEGEEERLRLSPSPTSQRSRGR R K L E R L 0 1 0 0 0 0 4 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1101.5666 P20700;E9PBF6;P02545;A0A0C4DGC5;Q3BDU5;Q03252 P02545 378 386 LMNB1;LMNA;LMNB2 Lamin-B1;Prelamin-A/C;Lamin-A/C;Lamin-B2 no no 2 1.0851E-06 160.63 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 4 1.0049 1.0685 23.171 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0049 1.0685 20.741 3 0 Median 1.047 0.98905 28.184 2 0 Median 0.90822 0.89808 10.698 4 0 Linear 1.3777 1.2508 18.696 4 0 Median 68744000 34593000 34151000 0 0 0 0 0 0 19673000 9236800 10436000 2007000 854000 1153000 40260000 21722000 18538000 6804600 2779500 4025100 17800 1834;2084;3010;2709 18551 92788;92789;92790;92791;92792;92793;92794;92795;92796;92797;92798;92799;92800 94541;94542;94543;94544;94545;94546;94547;94548;94549;94550;94551;94552;94553 94547 13 KLLEGEEERLK LDVKLALDMEISAYRKLLEGEEERLKLSPS SAYRKLLEGEEERLKLSPSPSSRVTVSRAS R K L L K L 0 1 0 0 0 0 4 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 11 2 1342.7456 P20700;Q03252 P20700 379 389 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2;3 4.2753E-05 146.17 By matching By MS/MS By MS/MS 2 5 4 0.83346 0.97082 37.399 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3988 1.4392 82.546 2 0 Median 0.75586 0.86465 9.9018 5 0 Median 1.4836 1.4022 4.982 3 0 Plateau 81237000 42137000 39101000 0 0 0 0 0 0 0 0 0 1368500 528560 839970 65790000 35739000 30051000 14079000 5868900 8209800 17801 2084;2709 18552 92801;92802;92803;92804;92805;92806;92807;92808;92809;92810;92811 94554;94555;94556;94557;94558;94559;94560;94561;94562;94563 94556 10 KLLEGEEERLR LDIKLALDMEIHAYRKLLEGEEERLRLSPS HAYRKLLEGEEERLRLSPSPTSQRSRGRAS R K L L R L 0 2 0 0 0 0 4 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 2 1370.7518 P02545;A0A0C4DGC5;Q3BDU5 P02545 378 388 LMNA Prelamin-A/C;Lamin-A/C no no 3 6.3212E-05 100.72 By MS/MS By MS/MS 3 2 1.287 1.2654 11.431 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0524 1.2042 14.988 3 0 Median 1.521 1.319 5.8759 2 0 Median 70858000 32869000 37989000 0 0 0 0 0 0 0 0 0 0 0 0 47944000 24058000 23886000 22915000 8810800 14104000 17802 1834;3010 18553 92812;92813;92814;92815;92816 94564;94565;94566;94567;94568;94569;94570 94565 7 KLLEGEESR MNVKLALDIEIATYRKLLEGEESRLESGMQ EIATYRKLLEGEESRLESGMQNMSIHTKTT R K L S R L 0 1 0 0 0 0 3 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 1 1059.556 P05787;CON__P05787;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;CON__Q9H552;P08670;B0YJC4;B0YJC5;P17661;H7C5W5;P41219 P05787 393 401 KRT8;KRT7;VIM;DES;PRPH Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Vimentin;Desmin;Peripherin no no 2 0.00088869 108.74 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 2 2 3 2 5 8 1.1338 1.114 19.403 22 Median 1.3393 1.3804 45.171 2 0 Median 1.508 1.3958 21.442 2 0 Median 1.1458 1.2203 10.182 3 0 Plateau 1.2021 1.0958 13.908 2 0 Median 1.1635 1.2495 6.6387 5 0 Median 1.122 0.95894 7.0084 8 0 Median 105080000 47573000 57507000 10160000 4831000 5329100 21008000 8697800 12310000 14334000 6614800 7719500 1437500 689350 748150 45421000 20537000 24884000 12719000 6203000 6515600 + 17803 750;1907;792 18554 92817;92818;92819;92820;92821;92822;92823;92824;92825;92826;92827;92828;92829;92830;92831;92832;92833;92834;92835;92836;92837;92838 94571;94572;94573;94574;94575;94576;94577;94578;94579;94580;94581;94582 94582 12 KLLEGEESRLESGMQNMSIHTK MNVKLALDIEIATYRKLLEGEESRLESGMQ SRLESGMQNMSIHTKTTSGYAGGLSSAYGG R K L T K T 0 1 1 0 0 1 4 2 1 1 3 2 2 0 0 3 1 0 0 0 0 0 22 2 2516.2363 P05787;CON__P05787 P05787 393 414 KRT8 Keratin, type II cytoskeletal 8 yes no 3;4 9.6579E-08 49.768 By matching By MS/MS By MS/MS 1 2 4 1.2285 1.4257 22.988 7 Median 1.0812 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95132 0.99415 9.7564 2 1 Median 1.248 1.4386 13.092 4 0 Median NaN NaN NaN 0 0 Median 134380000 57615000 76764000 4588100 1727600 2860600 0 0 0 0 0 0 9393900 4467100 4926700 120400000 51420000 68976000 0 0 0 + 17804 750 18555;18556 92839;92840;92841;92842;92843;92844;92845 94583;94584;94585;94586;94587 94586 271;272 5 KLLGLGQK SADKVESLDVDSEAKKLLGLGQKHLVMGDI DVDSEAKKLLGLGQKHLVMGDIPAAVNAFQ K K L Q K H 0 0 0 0 0 1 0 2 0 0 3 2 0 0 0 0 0 0 0 0 0 0 8 1 855.55419 P49321;Q5T624;E9PI86;E9PPQ8 P49321 45 52 NASP Nuclear autoantigenic sperm protein yes no 2 0.010475 67.344 By MS/MS By MS/MS 2 3 1.1518 1.2163 28.424 5 Median 1.1261 1.1233 11.244 2 0 Median 1.3208 1.2727 39.174 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26098000 11254000 14844000 9514300 4532000 4982300 16584000 6722300 9861400 0 0 0 0 0 0 0 0 0 0 0 0 17805 2376 18557 92846;92847;92848;92849;92850 94588;94589;94590 94589 3 KLLHSFLAK ASTNWRDHVKAMEERKLLHSFLAKSQDGLP KAMEERKLLHSFLAKSQDGLPPRRMKDSYI R K L A K S 1 0 0 0 0 0 0 0 1 0 3 2 0 1 0 1 0 0 0 0 0 0 9 1 1055.6492 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 65 73 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.0025396 77.662 By MS/MS By matching By matching By MS/MS 2 1 1 1 1.16 1.1244 19.501 5 Median 1.0717 1.0282 12.648 2 0 Median 1.4252 1.3355 NaN 1 0 Median 0.93033 0.97725 NaN 1 0 Median 1.5537 1.4758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53734000 24723000 29011000 30549000 14764000 15785000 9148800 3905900 5242900 4385700 2212600 2173100 9650300 3840300 5810000 0 0 0 0 0 0 17806 4400 18558 92851;92852;92853;92854;92855 94591;94592 94592 2 KLLIIGTTSR QALLVLLKKAPPQGRKLLIIGTTSRKDVLQ PPQGRKLLIIGTTSRKDVLQEMEMLNAFST R K L S R K 0 1 0 0 0 0 0 1 0 2 2 1 0 0 0 1 2 0 0 0 0 0 10 1 1100.6917 I3L0N3;P46459;I3L2G1;K7EQD6 I3L0N3 634 643 NSF Vesicle-fusing ATPase yes no 2 0.0025826 62.463 By MS/MS By MS/MS 1 1 1.2198 1.2344 10.103 2 Median 1.1193 1.1493 NaN 1 0 Median 1.3293 1.3258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13379000 6206200 7173200 9762700 4681900 5080800 3616700 1524300 2092400 0 0 0 0 0 0 0 0 0 0 0 0 17807 1272 18559 92856;92857 94593;94594;94595;94596 94594 4 KLLLDPSSPPTK YSSENEDSDQDREERKLLLDPSSPPTKALN EERKLLLDPSSPPTKALNGAEPNYHSLPSA R K L T K A 0 0 0 1 0 0 0 0 0 0 3 2 0 0 3 2 1 0 0 0 0 0 12 1 1294.7497 Q6IAA8;F5GX19;F5H3Y3;H0YFI1;F5H479 Q6IAA8 20 31 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 2 0.0008409 72.652 By MS/MS By MS/MS 1 1 0.75129 0.70668 32.567 2 Median 0.56106 0.56133 NaN 1 0 Median 1.006 0.88968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12091000 6874600 5216200 6537600 3949000 2588500 5553200 2925500 2627700 0 0 0 0 0 0 0 0 0 0 0 0 17808 3137 18560 92858;92859 94597;94598;94599 94598 3 KLLLSATSGEK CLHNLPKAVDDKQLRKLLLSATSGEKGVRI KQLRKLLLSATSGEKGVRIKECRVMRDLKG R K L E K G 1 0 0 0 0 0 1 1 0 0 3 2 0 0 0 2 1 0 0 0 0 0 11 1 1145.6656 Q9NW13 Q9NW13 505 515 RBM28 RNA-binding protein 28 yes yes 2 0.00019684 85.355 By MS/MS By MS/MS 1 2 1.1304 1.2269 10.735 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1009 1.2333 NaN 1 0 Median 1.2475 1.1195 12.96 2 0 Median 8662000 3657500 5004500 0 0 0 0 0 0 0 0 0 0 0 0 5961800 2589100 3372700 2700300 1068400 1631800 17809 4145 18561 92860;92861;92862 94600;94601;94602;94603;94604 94602 5 KLLLTEFR SNNDKLQDDSEMLPKKLLLTEFRSLVIKNS DSEMLPKKLLLTEFRSLVIKNSTSRNPSGI K K L F R S 0 1 0 0 0 0 1 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 8 1 1018.6175 O60934;A0A0C4DG07 O60934 653 660 NBN Nibrin yes no 2 0.012534 70.919 By MS/MS 1 1.3119 1.4882 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3119 1.4882 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7377300 3114600 4262700 0 0 0 0 0 0 7377300 3114600 4262700 0 0 0 0 0 0 0 0 0 17810 1641 18562 92863 94605 94605 1 KLLNHILDNSEDDTK LSRENHREVIATVIRKLLNHILDNSEDDTK KLLNHILDNSEDDTKSLFLIIKIIGDLLQF R K L T K S 0 0 2 3 0 0 1 0 1 1 3 2 0 0 0 1 1 0 0 0 0 0 15 1 1753.8846 Q14997 Q14997 874 888 PSME4 Proteasome activator complex subunit 4 yes yes 3 0.024211 17.701 By MS/MS By matching 1 1 1.5314 1.6997 43.967 2 Median NaN NaN NaN 0 0 Median 1.2841 1.2455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8263 2.3195 NaN 1 0 Median NaN NaN NaN 0 0 Median 4045900 1440400 2605500 0 0 0 2058000 790580 1267500 0 0 0 0 0 0 1987800 649770 1338000 0 0 0 17811 2906 18563 92864;92865 94606 94606 1 KLLPDTILEK KRKRREELFIEQKKRKLLPDTILEKLTTAS EQKKRKLLPDTILEKLTTASQTNIKKSPGK R K L E K L 0 0 0 1 0 0 1 0 0 1 3 2 0 0 1 0 1 0 0 0 0 0 10 1 1168.7067 Q9UMY1;H7C2B1 Q9UMY1 112 121 NOL7 Nucleolar protein 7 yes no 2 0.014998 43.77 By matching By MS/MS By matching 1 1 2 1.0906 1.0738 15.343 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93154 0.97931 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.113 1.1774 NaN 1 0 Median 1.2475 1.0731 23.163 2 0 Median 16847000 7729500 9117500 0 0 0 0 0 0 1467700 771050 696660 0 0 0 12000000 5633600 6366400 3379200 1324800 2054400 17812 4338 18564 92866;92867;92868;92869 94607;94608 94607 2 KLLSSLGGFK SRTWHVRRQAQQTVRKLLSSLGGFKLAHGL QQTVRKLLSSLGGFKLAHGLLEELKTVLSS R K L F K L 0 0 0 0 0 0 0 2 0 0 3 2 0 1 0 2 0 0 0 0 0 0 10 1 1048.6281 Q92616 Q92616 590 599 GCN1L1 Translational activator GCN1 yes yes 2 0.0053653 55.549 By MS/MS By MS/MS By matching 1 2 1 1.146 1.1004 13.616 4 Median 0.95812 0.9331 NaN 1 0 Median 1.146 1.1004 12.84 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3797 1.2312 NaN 1 0 Median 11141000 5077500 6063300 7886800 3551800 4334900 2911300 1375500 1535800 0 0 0 0 0 0 0 0 0 342680 150160 192520 17813 3544 18565 92870;92871;92872;92873 94609;94610 94610 2 KLLTEKDAQIAMMQQR RSNRDELELELAENRKLLTEKDAQIAMMQQ LLTEKDAQIAMMQQRIDRLALLNEKQAASP R K L Q R I 2 1 0 1 0 3 1 0 0 1 2 2 2 0 0 0 1 0 0 0 0 0 16 2 1903.0019 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 242 257 NUMA1 Nuclear mitotic apparatus protein 1 no no 4 0.020758 19.893 By MS/MS By MS/MS 1 1 0.99746 1.2431 37.984 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2308 1.6261 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80835 0.9503 NaN 1 0 Median NaN NaN NaN 0 0 Median 11481000 5808400 5672900 0 0 0 0 0 0 6304900 3046300 3258500 0 0 0 5176500 2762100 2414400 0 0 0 17814 2905;77 18566 92874;92875 94611;94612 94611 2 KLLVGSEDYGR FFRDMDDEESWIKEKKLLVGSEDYGRDLTG IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K K L G R D 0 1 0 1 0 0 1 2 0 0 2 1 0 0 0 1 0 0 1 1 0 0 11 1 1235.651 A0A0D9SF54;Q13813 Q13813 1784 1794 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.5107E-05 121.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 4 2 4 0.86393 0.83466 61.118 15 Median 0.82477 0.83466 NaN 1 0 Median 0.72792 0.668 113.72 3 1 Median 1.098 1.3154 NaN 1 0 Median 0.9864 0.93538 22.104 4 0 Median 1.1134 1.2597 16.863 2 0 Median 0.69609 0.61004 31.422 4 0 Median 140110000 72292000 67820000 3869800 1920300 1949500 64565000 36248000 28317000 29608000 14420000 15188000 20206000 9497100 10709000 9971100 4551900 5419100 11892000 5654800 6237200 17815 264;2838 18567 92876;92877;92878;92879;92880;92881;92882;92883;92884;92885;92886;92887;92888;92889;92890;92891;92892 94613;94614;94615;94616;94617;94618;94619;94620;94621;94622;94623;94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635 94624 23 KLLVPAAEGEDSLKK NRAEIKLKRAVEEVKKLLVPAAEGEDSLKK KLLVPAAEGEDSLKKMQLMELAILNGTYRD K K L K K M 2 0 0 1 0 0 2 1 0 0 3 3 0 0 1 1 0 0 0 1 0 0 15 2 1596.9087 Q96PU8;F5GXS8;F5GYM3;H0YG47;H0YGD6 Q96PU8 177 191 QKI Protein quaking yes no 3 0.00010864 60.209 By MS/MS By MS/MS 2 1 1.0261 0.97384 19.815 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82135 0.87694 26.684 2 0 Median 1.0346 0.97384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11510000 6519900 4990100 0 0 0 0 0 0 10068000 5755300 4312500 1442200 764560 677650 0 0 0 0 0 0 17816 3715 18568 92893;92894;92895 94636;94637;94638 94637 3 KLMAFQPAPK VVSCAAGVTISSVEKKLMAFQPAPKVIRCM SSVEKKLMAFQPAPKVIRCMTNTPVVVQEG K K L P K V 2 0 0 0 0 1 0 0 0 0 1 2 1 1 2 0 0 0 0 0 0 0 10 1 1129.6318 Q96C36;A0A087WZR9;A0A087WX69;A0A087WZF0 Q96C36 107 116 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 2 0.0094795 48.794 By MS/MS 1 1.6004 1.4053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6004 1.4053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2107900 755330 1352600 0 0 0 0 0 0 0 0 0 2107900 755330 1352600 0 0 0 0 0 0 17817 3615 18569 92896 94639 94639 1 KLMAMQR KSSRAEVRTHYDPPRKLMAMQRPGPYDRPG RTHYDPPRKLMAMQRPGPYDRPGAGRGYNS R K L Q R P 1 1 0 0 0 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 7 1 876.46736 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;E7EN40;H0YBD7;E5RGV0;P55795 P31943 200 206 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 0.033547 56.51 By matching By MS/MS 1 1 1.0426 1.0667 2.7488 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0752 1.0876 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.011 1.0462 NaN 1 0 Median NaN NaN NaN 0 0 Median 6883600 3249200 3634500 0 0 0 0 0 0 2339200 1063400 1275800 0 0 0 4544400 2185800 2358700 0 0 0 17818 1136;2502 18570 92897;92898 94640 94640 1 KLMDEVIK QDCMSRAVTRHKEVKKLMDEVIKSMKPK__ TRHKEVKKLMDEVIKSMKPK__________ K K L I K S 0 0 0 1 0 0 1 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 8 1 974.54705 Q96B26;H7C581 Q96B26 264 271 EXOSC8 Exosome complex component RRP43 yes no 2 0.009701 69.628 By matching By matching By MS/MS 1 1 1 1.0435 1.0163 3.2373 3 Median 1.0435 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0197 1.0651 NaN 1 0 Median 1.14 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20522000 9424300 11097000 2994300 1226900 1767400 0 0 0 10616000 4892900 5723300 6911000 3304500 3606500 0 0 0 0 0 0 17819 3604 18571 92899;92900;92901 94641 94641 1 KLMDLLPK KGFALVGVGSEASSKKLMDLLPKRELHGQN GSEASSKKLMDLLPKRELHGQNPVVTPCNK K K L P K R 0 0 0 1 0 0 0 0 0 0 3 2 1 0 1 0 0 0 0 0 0 0 8 1 956.57287 F8WJN3;Q16630 F8WJN3 139 146 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 0.020223 58.815 By MS/MS 1 0.86381 0.96722 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86381 0.96722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7721000 3933800 3787200 0 0 0 0 0 0 7721000 3933800 3787200 0 0 0 0 0 0 0 0 0 17820 1099 18572 92902 94642 94642 371 1 KLMEEISTSAAPAAR TRHEAELLSKKKIPRKLMEEISTSAAPAAR KLMEEISTSAAPAARPAAAKLKASRLFQPV R K L A R P 4 1 0 0 0 0 2 0 0 1 1 1 1 0 1 2 1 0 0 0 0 0 15 1 1573.8134 Q96L91 Q96L91 1438 1452 EP400 E1A-binding protein p400 yes yes 2;3 5.7247E-09 118.48 By MS/MS By MS/MS 2 1 0.70273 0.73012 4.1511 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64877 0.75187 NaN 1 0 Median 0.76117 0.709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10005000 5412400 4592500 0 0 0 0 0 0 8714700 4684500 4030300 1290200 727910 562270 0 0 0 0 0 0 17821 3700 18573;18574 92903;92904;92905 94643;94644;94645;94646 94644 1814 4 KLMEEISTSAAPAARPAAAK TRHEAELLSKKKIPRKLMEEISTSAAPAAR ISTSAAPAARPAAAKLKASRLFQPVQYGQK R K L A K L 7 1 0 0 0 0 2 0 0 1 1 2 1 0 2 2 1 0 0 0 0 0 20 2 2012.0725 Q96L91 Q96L91 1438 1457 EP400 E1A-binding protein p400 yes yes 3 0.0054115 45.916 By MS/MS 1 1.0246 1.3596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0246 1.3596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7018200 3133800 3884400 0 0 0 0 0 0 7018200 3133800 3884400 0 0 0 0 0 0 0 0 0 17822 3700 18575 92906 94647 94647 1 KLMHQAALLGQALQDSR WGLGGTCVNVGCIPKKLMHQAALLGQALQD MHQAALLGQALQDSRNYGWKVEETVKHDWD K K L S R N 3 1 0 1 0 3 0 1 1 0 4 1 1 0 0 1 0 0 0 0 0 0 17 1 1879.0098 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3;A0A0B4J225;E9PIZ5 E9PIR7 68 84 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 3 2.8506E-05 58.83 By MS/MS 1 1.7144 1.7082 NaN 1 Median 1.7144 1.7082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13800000 6430100 7369900 13800000 6430100 7369900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17823 11 18576 92907 94648 94648 1 KLMHVAYEEFEK SRDLSSQLLKVLGTRKLMHVAYEEFEKVMV GTRKLMHVAYEEFEKVMVACFEVFQTWDDE R K L E K V 1 0 0 0 0 0 3 0 1 0 1 2 1 1 0 0 0 0 1 1 0 0 12 1 1522.749 Q14204 Q14204 400 411 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 4.6408E-07 116.13 By MS/MS By MS/MS 1 2 2.0149 2.1633 24.71 3 Median NaN NaN NaN 0 0 Median 2.2582 2.1633 NaN 1 1 Median 1.6078 1.8223 32.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64923000 24316000 40607000 0 0 0 38848000 13897000 24950000 26075000 10419000 15657000 0 0 0 0 0 0 0 0 0 17824 2865 18577;18578 92908;92909;92910 94649;94650;94651;94652 94652 1554 4 KLMLDLNK ELMSDVPIRHSRKMRKLMLDLNKAKSMGQR RHSRKMRKLMLDLNKAKSMGQRLSLISKFR R K L N K A 0 0 1 1 0 0 0 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 8 1 973.56304 P55084;F5GZQ3 P55084 181 188 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0047531 98.933 By matching By MS/MS By matching By MS/MS 2 1 1 1 1.1255 1.1764 17.421 5 Median 0.93145 0.94737 9.118 2 0 Median 1.3859 1.2988 NaN 1 0 Median 1.1255 1.1764 NaN 1 0 Median 1.4144 1.3434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46687000 21105000 25583000 14526000 6593500 7932300 8778800 3595100 5183700 10634000 5067000 5567200 12748000 5849100 6899400 0 0 0 0 0 0 17825 2496 18579 92911;92912;92913;92914;92915 94653;94654 94654 2 KLMTTNEIQSNIYT KGLVKNIPQSTEILKKLMTTNEIQSNIYT_ KKLMTTNEIQSNIYT_______________ K K L Y T - 0 0 2 0 0 1 1 0 0 2 1 1 1 0 0 1 3 0 1 0 0 0 14 1 1654.8236 O95456 O95456 275 288 PSMG1 Proteasome assembly chaperone 1 yes yes 2 0.00085422 66.056 By MS/MS By matching 1 2 1.1811 1.0893 26.301 3 Plateau 1.1811 1.0893 NaN 1 0 Median 0.93613 0.79675 27.045 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13445000 5648100 7796500 11884000 4910800 6973400 1560400 737270 823100 0 0 0 0 0 0 0 0 0 0 0 0 17826 1774 18580 92916;92917;92918 94655;94656 94656 2 KLMVALAK DLEKDIISDTSGDFRKLMVALAKGRRAEDG DTSGDFRKLMVALAKGRRAEDGSVIDYELI R K L A K G 2 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 8 1 872.55174 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 169 176 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.003087 130 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 4 1 2 1.1932 1.0768 16.645 14 Median 1.1865 1.154 7.6683 3 0 Median 1.1847 1.0689 23.954 4 0 Median 1.2604 1.3129 NaN 1 0 Median 1.173 1.0445 3.5595 3 0 Median 1.3236 1.3935 NaN 1 0 Median 1.1978 1.0213 24.936 2 0 Median 104610000 48103000 56510000 17885000 8287200 9597900 18851000 8590900 10260000 26539000 12457000 14083000 35945000 16423000 19522000 2568500 1126400 1442200 2824200 1219200 1605000 17827 1885 18581;18582 92919;92920;92921;92922;92923;92924;92925;92926;92927;92928;92929;92930;92931;92932;92933 94657;94658;94659;94660;94661;94662;94663;94664;94665;94666;94667;94668;94669;94670;94671;94672 94671 652 16 KLMVEPLQAILIR EPLMEIGELALDMWRKLMVEPLQAILIRML WRKLMVEPLQAILIRMLLREIKNDRGGEDP R K L I R M 1 1 0 0 0 1 1 0 0 2 3 1 1 0 1 0 0 0 0 1 0 0 13 1 1522.9269 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 162 174 CUL2 Cullin-2 yes no 2;3 0.0021313 52.79 By MS/MS By MS/MS By matching 3 2 1 1.0401 1.0456 13.203 6 Median 1.0462 1.0636 18.223 3 0 Median 1.0061 1.0011 3.7393 2 0 Median 1.1004 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16136000 7565000 8571500 3882300 1808300 2074000 11843000 5562700 6279800 411690 194010 217680 0 0 0 0 0 0 0 0 0 17828 196 18583 92934;92935;92936;92937;92938;92939 94673;94674;94675;94676 94676 4 KLNAFGNAFLNR VPGNALVVDPRRPFRKLNAFGNAFLNRFMC PFRKLNAFGNAFLNRFMCAQLPNPVLDSIS R K L N R F 2 1 3 0 0 0 0 1 0 0 2 1 0 2 0 0 0 0 0 0 0 0 12 1 1363.7361 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 138 149 EHD1 EH domain-containing protein 1 no no 3 0.00015677 62.466 By MS/MS By MS/MS By matching 1 1 1 1.1389 1.1902 15.181 3 Median 1.1389 1.1443 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0673 1.1902 NaN 1 0 Median 1.6141 1.5147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7755400 3192100 4563300 4750700 1908600 2842100 0 0 0 2858500 1227900 1630600 146070 55511 90563 0 0 0 0 0 0 17829 5 18584 92940;92941;92942 94677;94678 94677 2 KLNDLIK LFKDIQSLPRNAALRKLNDLIKRARLAKVH LPRNAALRKLNDLIKRARLAKVHAYIISSL R K L I K R 0 0 1 1 0 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 7 1 842.52255 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;Q9H223 A0A024R571 307 313 EHD1;EHD4 EH domain-containing protein 1;EH domain-containing protein 4 no no 2 0.042226 50.127 By MS/MS By matching By matching By matching By matching 1 3 1 2 2 1.1575 1.0931 18.547 9 Median 1.1575 1.0931 NaN 1 0 Median 1.2443 1.1643 8.4276 3 0 Median 1.2058 1.2662 NaN 1 0 Median 1.0961 1.053 21.555 2 0 Median NaN NaN NaN 0 0 Median 0.95798 0.83604 22.404 2 0 Median 17704000 8001700 9702600 5005700 2129600 2876100 6266300 2791500 3474800 2285100 1067500 1217600 937270 493490 443780 0 0 0 3209900 1519600 1690400 17830 5;3939 18585 92943;92944;92945;92946;92947;92948;92949;92950;92951 94679 94679 1 KLNEILQAR MFAKGTEITHAVVIKKLNEILQARGKKGTD HAVVIKKLNEILQARGKKGTDRAAQIELLQ K K L A R G 1 1 1 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1083.64 Q99613;B5ME19 Q99613 332 340 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.00088869 108.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1.187 1.0905 29.022 7 Median 0.98267 1.0238 NaN 1 0 Median 1.6844 1.5513 27.431 3 0 Median 0.79534 0.90466 NaN 1 0 Median 1.1314 1.0873 NaN 1 0 Median 1.5854 1.7597 NaN 1 0 Median NaN NaN NaN 0 0 Median 45214000 20777000 24438000 10681000 4912900 5768400 29559000 13683000 15877000 2018300 1067200 951130 1419700 676890 742850 1535500 436990 1098500 0 0 0 17831 3757 18586 92952;92953;92954;92955;92956;92957;92958 94680;94681;94682;94683;94684;94685;94686;94687 94683 8 KLNEQVTQEQPLK QGFVQVTEICDAYTKKLNEQVTQEQPLKDL TKKLNEQVTQEQPLKDLLHLPELFSPGMLV K K L L K D 0 0 1 0 0 3 2 0 0 0 2 2 0 0 1 0 1 0 0 1 0 0 13 1 1553.8413 Q14690;A0A3B3IUD7 Q14690 122 134 PDCD11 Protein RRP5 homolog yes no 2;3 0.016135 35.511 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 7 9 10 6 6 6 1.3733 1.4319 84.43 44 Median 1.148 1.1049 5.9704 7 0 Median 1.2056 1.0625 9.2985 9 0 Median 1.4106 1.4965 23.345 10 0 Median 1.7416 1.5851 16.738 6 0 Median 1.3194 1.3834 201.96 6 0 Median 5.3095 4.7321 12.131 6 0 Median 1625900000 644280000 981610000 761670000 333650000 428020000 235880000 109440000 126440000 204320000 82618000 121700000 211370000 72731000 138640000 32812000 16931000 15881000 179830000 28912000 150920000 17832 448 18587 92959;92960;92961;92962;92963;92964;92965;92966;92967;92968;92969;92970;92971;92972;92973;92974;92975;92976;92977;92978;92979;92980;92981;92982;92983;92984;92985;92986;92987;92988;92989;92990;92991;92992;92993;92994;92995;92996;92997;92998;92999;93000;93001;93002 94688;94689;94690;94691;94692;94693;94694;94695;94696;94697;94698;94699;94700;94701;94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713 94704 25 KLNIGGGGLGYR NAWFRKSRFKGGKGKKLNIGGGGLGYRERP KGKKLNIGGGGLGYRERPGLGSENMDRGNN K K L Y R E 0 1 1 0 0 0 0 5 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 1 1203.6724 Q86XP3;A0A0A0MSJ0 Q86XP3 650 661 DDX42 ATP-dependent RNA helicase DDX42 yes no 2;3 4.0418E-05 96.668 By MS/MS By MS/MS By matching By matching 3 2 2 2 1.1031 1.2497 21.764 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96321 1.0919 11.282 3 0 Median 1.2234 1.1757 16.186 2 0 Median 1.2827 1.4358 10.841 2 0 Median 1.2679 1.1134 46.997 2 0 Median 32604000 15840000 16764000 0 0 0 0 0 0 23980000 11977000 12003000 3511400 1772500 1738900 3790000 1510900 2279100 1322300 579370 742950 17833 3302 18588 93003;93004;93005;93006;93007;93008;93009;93010;93011 94714;94715;94716;94717;94718;94719 94714 6 KLNKEELPVIPK AKKRKGSSSQAPASKKLNKEELPVIPKGKP ASKKLNKEELPVIPKGKPKSGRVWKDRSKK K K L P K G 0 0 1 0 0 0 2 0 0 1 2 3 0 0 2 0 0 0 0 1 0 0 12 2 1406.8497 Q9H6F5 Q9H6F5 226 237 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2;3 0.00019619 71.176 By matching By matching By MS/MS By MS/MS 1 1 4 3 0.79047 0.81655 20.446 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86528 1.0224 NaN 1 0 Median 0.64462 0.67269 NaN 1 0 Median 0.78021 0.85176 20.191 4 0 Median 0.79047 0.68872 24.6 3 0 Median 62704000 33629000 29075000 0 0 0 0 0 0 1947300 1003300 943990 2268500 1186800 1081700 46596000 24951000 21645000 11892000 6487800 5404500 17834 3974 18589 93012;93013;93014;93015;93016;93017;93018;93019;93020 94720;94721;94722;94723 94721 4 KLNLAFR AKAKGVWSTLPVNEKKLNLAFRSARSVILI STLPVNEKKLNLAFRSARSVILIFSVRESG K K L F R S 1 1 1 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 1 860.52322 Q96MU7;J3QR07 Q96MU7 386 392 YTHDC1 YTH domain-containing protein 1 yes no 2 0.038057 52.683 By matching By MS/MS By matching 1 1 1 1.1883 1.3069 13.055 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1092 1.0656 NaN 1 0 Median 1.1883 1.3069 NaN 1 0 Median 1.5629 1.3588 NaN 1 0 Median 11204000 4993600 6210600 0 0 0 0 0 0 0 0 0 614250 291360 322880 8356200 3706900 4649300 2233800 995330 1238400 17835 1347 18590 93021;93022;93023 94724 94724 1 KLNQALLDLHALGSAR GKTPDAMKAAMALEKKLNQALLDLHALGSA LNQALLDLHALGSARTDPHLCDFLETHFLD K K L A R T 3 1 1 1 0 1 0 1 1 0 5 1 0 0 0 1 0 0 0 0 0 0 16 1 1718.9792 P02792 P02792 106 121 FTL Ferritin light chain yes yes 2;3;4 2.9625E-06 86.814 By MS/MS By MS/MS By matching 4 2 1 1.4374 1.4232 57.071 7 Median 1.4503 1.4374 21.711 4 0 Median 0.51279 0.45231 11.922 2 0 Median NaN NaN NaN 0 0 Median 1.8989 1.6809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45042000 18236000 26806000 40979000 15723000 25256000 3761200 2392100 1369100 0 0 0 302160 121060 181090 0 0 0 0 0 0 17836 1837 18591 93024;93025;93026;93027;93028;93029;93030 94725;94726;94727;94728;94729;94730 94728 6 KLNSPEETAFQTPK ATNGRVSSSYPVEPKKLNSPEETAFQTPKS KKLNSPEETAFQTPKSSQMPRPSVPPLVKT K K L P K S 1 0 1 0 0 1 2 0 0 0 1 2 0 1 2 1 2 0 0 0 0 0 14 1 1588.8097 Q9BTX1 Q9BTX1 403 416 NDC1 Nucleoporin NDC1 yes yes 2;3 1.335E-08 124.07 By MS/MS By MS/MS 2 3 0.90498 0.91941 9.6382 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80309 0.90953 0.62258 2 0 Median 1.0166 0.95215 11.514 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45370000 24513000 20857000 0 0 0 0 0 0 37002000 20366000 16636000 8368300 4147700 4220600 0 0 0 0 0 0 17837 3831 18592 93031;93032;93033;93034;93035 94731;94732;94733;94734;94735;94736;94737;94738;94739 94734 9 KLNTTTMSNATANSSIR SKRRGLAPNTPGKARKLNTTTMSNATANSS NTTTMSNATANSSIRPIFGGTVYHSPVSRL R K L I R P 2 1 3 0 0 0 0 0 0 1 1 1 1 0 0 3 4 0 0 0 0 0 17 1 1808.9051 O43663;G3V3N7 O43663 487 503 PRC1 Protein regulator of cytokinesis 1 yes no 3 0.0069059 24.043 By MS/MS 1 1.0933 1.0024 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0933 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1737400 756700 980650 0 0 0 0 0 0 0 0 0 1737400 756700 980650 0 0 0 0 0 0 17838 1581 18593 93036 94740 94740 1 KLNVTEQEK VEHINKTIAPALVSKKLNVTEQEKIDKLMI PALVSKKLNVTEQEKIDKLMIEMDGTENKS K K L E K I 0 0 1 0 0 1 2 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 9 1 1087.5873 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 81 89 ENO1 Alpha-enolase;Enolase yes no 2 2.2773E-80 253.64 By MS/MS By MS/MS By MS/MS 2 1 1 1.3781 1.3249 13.093 4 Median 1.3781 1.3249 1.5361 2 0 Median 1.1802 1.1022 NaN 1 0 Median 1.4401 1.5148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49102000 21234000 27868000 15643000 6325800 9317300 30046000 13450000 16596000 3412900 1458700 1954200 0 0 0 0 0 0 0 0 0 17839 1873 18594 93037;93038;93039;93040 94741;94742;94743;94744;94745 94745 5 KLNVTEQEKIDK VEHINKTIAPALVSKKLNVTEQEKIDKLMI VSKKLNVTEQEKIDKLMIEMDGTENKSKFG K K L D K L 0 0 1 1 0 1 2 0 0 1 1 3 0 0 0 0 1 0 0 1 0 0 12 2 1443.7933 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 81 92 ENO1 Alpha-enolase;Enolase yes no 2;3 6.0351E-21 195.25 By MS/MS By MS/MS By matching By MS/MS By matching 4 6 2 2 1 1.1402 1.1229 12.198 15 Median 1.1239 1.0932 9.5248 4 0 Median 1.142 1.1074 4.6046 6 0 Median 1.1822 1.3866 6.4739 2 0 Median 0.99404 0.9555 12.632 2 0 Median NaN NaN NaN 0 0 Median 1.2176 1.1926 NaN 1 0 Median 328030000 150470000 177560000 156220000 71704000 84514000 140900000 64761000 76143000 16657000 7425200 9231600 12375000 5877600 6497400 0 0 0 1875000 704050 1171000 17840 1873 18595 93041;93042;93043;93044;93045;93046;93047;93048;93049;93050;93051;93052;93053;93054;93055 94746;94747;94748;94749;94750;94751;94752;94753;94754;94755;94756;94757;94758 94752 13 KLNYEENKEESLLEK EAVKRLKEKLEAEMKKLNYEENKEESLLEK KLNYEENKEESLLEKRRQLSRDIGRLKETY K K L E K R 0 0 2 0 0 0 5 0 0 0 3 3 0 0 0 1 0 0 1 0 0 0 15 2 1864.9418 O95347 O95347 467 481 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 4.8264E-08 132.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.99524 1.0296 27.548 6 Median 0.92561 0.97028 NaN 1 0 Median 0.98507 0.93555 NaN 1 0 Median 1.0504 1.2623 NaN 1 0 Median 1.0834 1.1095 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76703 0.79128 45.621 2 0 Median 141530000 65607000 75926000 26828000 13464000 13363000 20389000 8502000 11887000 41747000 18698000 23049000 46291000 21802000 24489000 0 0 0 6278600 3141300 3137300 17841 1766 18596 93056;93057;93058;93059;93060;93061 94759;94760;94761;94762;94763;94764;94765;94766;94767 94765 9 KLPAIALDLLR VNVLKMAASSVKKDRKLPAIALDLLRLALK KKDRKLPAIALDLLRLALKEDKFPRFWKEV R K L L R L 2 1 0 1 0 0 0 0 0 1 4 1 0 0 1 0 0 0 0 0 0 0 11 1 1221.7809 Q9BQG0;I3L1L3 Q9BQG0 263 273 MYBBP1A Myb-binding protein 1A yes no 2;3 0.0036444 52.79 By matching By MS/MS By matching By MS/MS By matching 4 2 1 5 4 1.0134 1.0693 19.375 16 Median NaN NaN NaN 0 0 Median 1.1184 1.0474 21.358 4 0 Median 0.95318 1.0841 2.5651 2 0 Median 0.96727 0.93379 NaN 1 0 Median 0.97222 1.1012 12.098 5 0 Median 0.98503 0.87279 23.887 4 0 Median 32420000 16462000 15958000 0 0 0 7119600 3402600 3716900 6014000 2864900 3149100 117070 60277 56791 9227000 4651100 4575900 9942400 5482700 4459800 17842 3789 18597 93062;93063;93064;93065;93066;93067;93068;93069;93070;93071;93072;93073;93074;93075;93076;93077 94768;94769;94770;94771;94772;94773;94774 94770 7 KLPDFLTAK SYVECLLYSFHQLGRKLPDFLTAKLNAEKL FHQLGRKLPDFLTAKLNAEKLKDFKIRLQY R K L A K L 1 0 0 1 0 0 0 0 0 0 2 2 0 1 1 0 1 0 0 0 0 0 9 1 1031.6015 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 356 364 API5 Apoptosis inhibitor 5 yes no 2 0.0028759 75.043 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.0354 0.95144 12.824 6 Median 0.87442 0.82099 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90557 0.9393 NaN 1 0 Median 1.0721 1.03 10.145 3 0 Plateau 1.0879 1.1606 NaN 1 0 Median NaN NaN NaN 0 0 Median 103400000 53367000 50033000 10918000 5762600 5155800 0 0 0 72996000 38256000 34740000 14862000 7198000 7664400 4623400 2150500 2472900 0 0 0 17843 1103 18598 93078;93079;93080;93081;93082;93083 94775;94776;94777;94778;94779;94780;94781;94782;94783;94784 94778 10 KLPDLER MVVPDKISEVVELLKKLPDLERLLSKIHNV SEVVELLKKLPDLERLLSKIHNVGSPLKSQ K K L E R L 0 1 0 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 7 1 869.49707 P52701;A0A494C0M1;A0A087WWJ1 P52701 814 820 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.074594 38.962 By MS/MS 1 0.75251 0.76201 NaN 1 Median 0.75251 0.76201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718900 1683500 2035400 3718900 1683500 2035400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17844 2453 18599 93084 94785 94785 1 KLPEEEVESSR FESSSSIGAEKPRNKKLPEEEVESSRTPWL PRNKKLPEEEVESSRTPWLYEQEGEVEKPF K K L S R T 0 1 0 0 0 0 4 0 0 0 1 1 0 0 1 2 0 0 0 1 0 0 11 1 1301.6463 A0A4W8VX11;Q15154 A0A4W8VX11 1199 1209 PCM1 Pericentriolar material 1 protein yes no 2;3 0.027121 34.532 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 0.75225 0.75511 22.498 6 Median 1.1467 1.175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67311 0.74956 10.021 2 0 Median 0.73408 0.70867 NaN 1 0 Median 0.68059 0.77239 26.506 2 0 Median NaN NaN NaN 0 0 Median 5853100 3470200 2382900 370250 173880 196370 0 0 0 1721000 1015800 705190 387590 183920 203670 3374200 2096600 1277600 0 0 0 17845 479 18600 93085;93086;93087;93088;93089;93090 94786;94787;94788;94789;94790 94787 5 KLPEELGR HDAKEIFGRIQDKHKKLPEELGRDQNTVET RIQDKHKKLPEELGRDQNTVETLQRMHTTF K K L G R D 0 1 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 1 940.53418 Q01082;A0A087WUZ3 Q01082 1827 1834 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.019332 63.48 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.81522 0.787 65.488 5 Median NaN NaN NaN 0 0 Median 0.48059 0.45013 114.14 2 1 Median 0.72536 0.86984 NaN 1 0 Median 0.81522 0.787 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85225 0.75706 NaN 1 0 Median 25639000 16126000 9513700 0 0 0 13112000 8878700 4233400 5790700 3372800 2417900 2469800 1372400 1097500 0 0 0 4266800 2501900 1764900 17846 2681 18601 93091;93092;93093;93094;93095 94791;94792;94793;94794;94795 94791 5 KLPEELGRDQNTVETLQR HDAKEIFGRIQDKHKKLPEELGRDQNTVET EELGRDQNTVETLQRMHTTFEHDIQALGTQ K K L Q R M 0 2 1 1 0 2 3 1 0 0 3 1 0 0 1 0 2 0 0 1 0 0 18 2 2125.1127 Q01082;A0A087WUZ3 Q01082 1827 1844 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 8.146E-16 120.24 By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 0.95862 0.9244 25.043 7 Median 1.137 1.1601 NaN 1 1 Median 1.1269 1.0867 22.869 2 0 Median 0.72519 0.87146 4.9026 2 0 Median NaN NaN NaN 0 0 Median 1.333 1.463 NaN 1 0 Median 0.83502 0.72381 NaN 1 0 Median 100910000 53675000 47237000 13489000 5804900 7684000 8699000 3958000 4741000 75126000 42248000 32878000 0 0 0 2487700 1196400 1291300 1111000 468090 642910 17847 2681 18602 93096;93097;93098;93099;93100;93101;93102 94796;94797;94798;94799 94798 4 KLPEEVVK DKRMWQSMCPLRQFRKLPEEVVKKIEKKNF CPLRQFRKLPEEVVKKIEKKNFPFERLYDL R K L V K K 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 0 0 0 0 2 0 0 8 1 940.55933 O75643;A0A494C1A5 O75643 1134 1141 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.020048 51.736 By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 2 0.99182 0.94646 16.009 8 Median 1.0709 1.1322 25.063 2 0 Median 1.0295 0.99602 NaN 1 0 Median 0.70079 0.80955 NaN 1 0 Median 1.085 1.0188 NaN 1 0 Median 0.78526 0.84176 NaN 1 0 Median 1.0057 0.90433 6.161 2 0 Median 25587000 13201000 12386000 1600700 822040 778630 2912800 1376600 1536100 6293900 3819900 2473900 2661200 1244400 1416800 4869100 2380700 2488400 7249700 3557500 3692200 17848 1688 18603 93103;93104;93105;93106;93107;93108;93109;93110 94800;94801;94802 94802 3 KLPEMDID AEQGTDTAVPSDSDKKLPEMDID_______ VPSDSDKKLPEMDID_______________ K K L I D - 0 0 0 2 0 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 8 1 959.46338 P34932 P34932 833 840 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.067701 35.249 By MS/MS 1 1.177 1.1361 NaN 1 Median 1.177 1.1361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16751000 8470900 8280000 16751000 8470900 8280000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17849 2230 18604 93111 94803 94803 1 KLPEYNPR VIARDESETEKEKIKKLPEYNPRTL_____ TEKEKIKKLPEYNPRTL_____________ K K L P R T 0 1 1 0 0 0 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 8 1 1015.5451 Q9P258 Q9P258 513 520 RCC2 Protein RCC2 yes yes 2 0.018279 54.157 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 1 0.70764 0.72194 16.065 7 Median 0.65484 0.66369 NaN 1 0 Median 1.0831 0.90488 NaN 1 0 Median 0.67807 0.72704 12.078 2 0 Median 0.79893 0.76086 7.4256 2 0 Median NaN NaN NaN 0 0 Median 0.6046 0.55303 NaN 1 0 Median 17308000 9680900 7627300 2106200 1284400 821770 1600700 975720 625030 8354300 4625000 3729300 4752800 2560400 2192400 0 0 0 494160 235360 258800 17850 4214 18605 93112;93113;93114;93115;93116;93117;93118 94804;94805;94806;94807 94805 4 KLPFPDETHER MRSVGLEVYTQSFSRKLPFPDETHERYMVS SFSRKLPFPDETHERYMVSGTNVYGILRAP R K L E R Y 0 1 0 1 0 0 2 0 1 0 1 1 0 1 2 0 1 0 0 0 0 0 11 1 1367.6834 E9PLV6;E9PPZ9;O43292;E9PLG8 E9PLV6 111 121 GPAA1 Glycosylphosphatidylinositol anchor attachment 1 protein yes no 3 0.00033606 59.198 By MS/MS 1 0.62102 0.57621 NaN 1 Median NaN NaN NaN 0 0 Median 0.62102 0.57621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9093300 5842600 3250700 0 0 0 9093300 5842600 3250700 0 0 0 0 0 0 0 0 0 0 0 0 17851 964 18606 93119 94808;94809 94809 2 KLPGFPTQDDEVMMLTER YDVELFQRIEHLIGKKLPGFPTQDDEVMML GFPTQDDEVMMLTERVAEAQRFARMELREH K K L E R V 0 1 0 2 0 1 2 1 0 0 2 1 2 1 2 0 2 0 0 1 0 0 18 1 2106.0126 Q9H0S4 Q9H0S4 385 402 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 3 1.2691E-06 68.653 By MS/MS By matching By MS/MS 1 1 1 0.79954 0.82849 6.0795 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79295 0.80378 NaN 1 0 Median 0.92684 0.90366 NaN 1 0 Median 0.79954 0.82849 NaN 1 1 Median NaN NaN NaN 0 0 Median 10081000 5298600 4782500 0 0 0 0 0 0 8871600 4651500 4220100 173170 90858 82307 1036300 556230 480050 0 0 0 17852 3928 18607 93120;93121;93122 94810;94811;94812;94813 94811 4 KLPHPDLPAEEK IVTDVFQGSMRIFTKKLPHPDLPAEEKEQL FTKKLPHPDLPAEEKEQLLHNDEYQETMVE K K L E K E 1 0 0 1 0 0 2 0 1 0 2 2 0 0 3 0 0 0 0 0 0 0 12 1 1372.7351 B9A018;Q53GS9;A0A087X1B2 B9A018 359 370 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.00014668 67.879 By MS/MS By MS/MS 1 1 0.64708 0.65906 15.451 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52591 0.59085 NaN 1 0 Median 0.79617 0.73514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9645200 5627300 4017900 0 0 0 0 0 0 5873600 3694700 2178900 3771500 1932500 1839000 0 0 0 0 0 0 17853 654 18608 93123;93124 94814;94815;94816;94817;94818;94819;94820;94821 94821 8 KLPIDVTEGEVISLGLPFGK DSRSAGVPSRVIHIRKLPIDVTEGEVISLG VTEGEVISLGLPFGKVTNLLMLKGKNQAFI R K L G K V 0 0 0 1 0 0 2 3 0 2 3 2 0 1 2 1 1 0 0 2 0 0 20 1 2111.1878 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59;K7ELW5 A0A0U1RRM4 65 84 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2;3 6.4245E-10 89.013 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 9 4 2 3 5 0.81118 0.79062 13.797 24 Median 0.84403 0.80243 NaN 1 0 Median 0.81439 0.7485 10.74 9 0 Median 0.72764 0.76228 8.8344 4 0 Median 0.88602 0.88564 8.5209 2 0 Median 0.72554 0.77411 10.995 3 0 Median 0.90851 0.80971 24.997 5 0 Median 200640000 112190000 88453000 2373300 1117700 1255500 29988000 15631000 14357000 144310000 83111000 61197000 967450 499700 467750 10748000 5992400 4755300 12255000 5833700 6421100 17854 312 18609 93125;93126;93127;93128;93129;93130;93131;93132;93133;93134;93135;93136;93137;93138;93139;93140;93141;93142;93143;93144;93145;93146;93147;93148 94822;94823;94824;94825;94826;94827;94828;94829;94830;94831;94832;94833;94834;94835;94836;94837;94838 94829 17 KLPIQEFHLSR GSPVLMRHLTASEAKKLPIQEFHLSRILQE SEAKKLPIQEFHLSRILQELGLNQEQFVDL K K L S R I 0 1 0 0 0 1 1 0 1 1 2 1 0 1 1 1 0 0 0 0 0 0 11 1 1366.7721 P39748;I3L3E9 P39748 201 211 FEN1 Flap endonuclease 1 yes no 2;3 2.719E-05 129 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 4 3 3 1.0444 0.99064 12.235 20 Median 0.99689 1.0367 18.011 3 0 Plateau 1.0668 0.98498 8.6896 2 0 Median 0.92373 0.98954 12.609 5 0 Median 1.0493 0.95007 5.6644 4 0 Median 1.1391 1.2355 7.4499 3 0 Median 1.1138 0.99174 4.1363 3 0 Median 539100000 265090000 274010000 44534000 20302000 24232000 5450500 2285100 3165400 196680000 101240000 95441000 261370000 126500000 134870000 13864000 6644600 7219300 17202000 8123800 9077800 17855 2283 18610 93149;93150;93151;93152;93153;93154;93155;93156;93157;93158;93159;93160;93161;93162;93163;93164;93165;93166;93167;93168 94839;94840;94841;94842;94843;94844;94845;94846;94847;94848;94849;94850;94851;94852;94853;94854;94855;94856;94857;94858;94859;94860;94861;94862;94863;94864;94865;94866;94867;94868;94869;94870;94871;94872;94873 94866 34 KLPLAGQVLLK PAVTADDLRQLFGDRKLPLAGQVLLKSGYA FGDRKLPLAGQVLLKSGYAFVDYPDQNWAI R K L L K S 1 0 0 0 0 1 0 1 0 0 4 2 0 0 1 0 0 0 0 1 0 0 11 1 1178.7751 F8W930;Q9Y6M1 F8W930 27 37 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.053675 28.727 By MS/MS By matching By matching By matching By matching 1 1 1 1 2 0.99333 0.93687 25.833 6 Median 0.6691 0.62622 NaN 1 0 Median 0.98918 0.9305 NaN 1 0 Median 0.9975 1.1279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2485 1.332 NaN 1 0 Median 1.0173 0.88783 8.5695 2 0 Median 24887000 13907000 10980000 16731000 9655600 7075600 1149100 493520 655590 3485700 1812200 1673500 0 0 0 1776800 893840 883010 1744400 1052200 692160 17856 1088 18611 93169;93170;93171;93172;93173;93174 94874 94874 1 KLPLEVTTRPSTEEPVR ALQKTTPIRSQADLKKLPLEVTTRPSTEEP PLEVTTRPSTEEPVRRPQRPRSPPLPAVIR K K L V R R 0 2 0 0 0 0 3 0 0 0 2 1 0 0 3 1 3 0 0 2 0 0 17 2 1951.0738 Q9Y6X9 Q9Y6X9 592 608 MORC2 MORC family CW-type zinc finger protein 2 yes yes 3;4 7.9971E-06 59.261 By matching By MS/MS By MS/MS 1 2 2 0.55038 0.5637 21.1 5 Median NaN NaN NaN 0 0 Median 0.79204 0.85906 NaN 1 0 Median 0.51447 0.57998 9.5419 2 0 Median 0.52468 0.5301 8.6915 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18576000 12163000 6412700 0 0 0 534850 285380 249480 14127000 9228300 4899100 3913300 2649300 1264100 0 0 0 0 0 0 17857 4501 18612 93175;93176;93177;93178;93179 94875;94876;94877;94878 94876 2 KLPPGGLPGIDLSDPK QAENPPDYSEYLKGKKLPPGGLPGIDLSDP LPPGGLPGIDLSDPKQLAEFTKVKPKRSKG K K L P K Q 0 0 0 2 0 0 0 3 0 1 3 2 0 0 4 1 0 0 0 0 0 0 16 1 1602.8981 O15391 O15391 218 233 YY2 Transcription factor YY2 yes yes 3 3.2157E-05 55.755 By MS/MS By matching 2 2 0.50278 0.51381 12.02 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45775 0.47883 5.9203 2 0 Median 0.56862 0.56837 10.222 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16554000 11023000 5531500 0 0 0 0 0 0 14226000 9556700 4669700 2327700 1465900 861820 0 0 0 0 0 0 17858 1544 18613 93180;93181;93182;93183 94879;94880;94881;94882 94879 4 KLPPLCHGLPTQR YLLSALLSAAFLLVRKLPPLCHGLPTQRED VRKLPPLCHGLPTQREDGNPCDFDWREVEI R K L Q R E 0 1 0 0 1 1 0 1 1 0 3 1 0 0 3 0 1 0 0 0 0 0 13 1 1515.8344 Q9Y320;E9PSF0;E9PRL5;H3BSU7;E9PLR1;G3V155 Q9Y320 41 53 TMX2;TMX2-CTNND1 Thioredoxin-related transmembrane protein 2 yes no 3 0.00021965 62.287 By MS/MS 1 0.59226 0.5476 NaN 1 Median NaN NaN NaN 0 0 Median 0.59226 0.5476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14769000 8688300 6081100 0 0 0 14769000 8688300 6081100 0 0 0 0 0 0 0 0 0 0 0 0 17859 4404 18614 93184 94883;94884 94883 2 KLPPPPGSPLGHSPTASPPPTAR EARSPSDLHISPLAKKLPPPPGSPLGHSPT PLGHSPTASPPPTARKMFPGLAAPSLPKKL K K L A R K 2 1 0 0 0 0 0 2 1 0 2 1 0 0 9 3 2 0 0 0 0 0 23 1 2258.2172 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 320 342 WIZ Protein Wiz yes no 3;4 9.0124E-06 54.728 By MS/MS 2 0.22915 0.25963 33.765 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22915 0.25963 33.765 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14726000 12245000 2480900 0 0 0 0 0 0 14726000 12245000 2480900 0 0 0 0 0 0 0 0 0 17860 656 18615 93185;93186 94885;94886 94885 2 KLPPVLAIQLK KCNKKVDTVKRLLIKKLPPVLAIQLKRFDY LLIKKLPPVLAIQLKRFDYDWERECAIKFN K K L L K R 1 0 0 0 0 1 0 0 0 1 3 2 0 0 2 0 0 0 0 1 0 0 11 1 1218.8064 Q93008 Q93008 1788 1798 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.054978 28.399 By MS/MS By matching 2 1 0.76429 0.76627 6.8409 3 Plateau 0.72907 0.7503 5.604 2 0 Median NaN NaN NaN 0 0 Median 0.59425 0.68122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13880000 7991300 5888800 12498000 7129400 5368200 0 0 0 1382500 861900 520640 0 0 0 0 0 0 0 0 0 17861 3573 18616 93187;93188;93189 94887 94887 1 KLPVESIQIVLEELRK EAQESPLFNNVKLQRKLPVESIQIVLEELR LPVESIQIVLEELRKKGNLEWLDKSKSSFL R K L R K K 0 1 0 0 0 1 3 0 0 2 3 2 0 0 1 1 0 0 0 2 0 0 16 2 1893.1299 Q9BRG1;K7EKV4;K7ENE3 Q9BRG1 68 83 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 3 0.0010994 35.757 By MS/MS By matching 1 1 1.4289 1.4853 33.884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6384 1.8874 NaN 1 0 Median 1.2462 1.1688 NaN 1 0 Median 2402300 909940 1492300 0 0 0 0 0 0 0 0 0 0 0 0 2062400 732840 1329500 339910 177100 162800 17862 3795 18617 93190;93191 94888 94888 1 KLPVPLESVK IKIIDDSDSNLSVVKKLPVPLESVKEMLNS LSVVKKLPVPLESVKEMLNSVMQELEDYSE K K L V K E 0 0 0 0 0 0 1 0 0 0 2 2 0 0 2 1 0 0 0 2 0 0 10 1 1108.6856 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 734 743 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0054008 55.461 By MS/MS By MS/MS 4 2 0.76997 0.83456 18.29 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71251 0.81476 19.778 4 0 Median 0.97587 0.96001 20.416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60396000 35895000 24500000 0 0 0 0 0 0 56791000 34001000 22791000 3604000 1894300 1709700 0 0 0 0 0 0 17863 2401;525;3762 18618 93192;93193;93194;93195;93196;93197 94889;94890;94891;94892;94893;94894;94895 94892 7 KLPVSSLTISR ______________________________ TFERKLPVSSLTISRLIDNISSREEIDHAE R K L S R L 0 1 0 0 0 0 0 0 0 1 2 1 0 0 1 3 1 0 0 1 0 0 11 1 1199.7238 G5EA06;Q92552;D6RH20;D6RJC7;E5RJ73 G5EA06 8 18 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2;3 0.0034156 53.683 By MS/MS By matching By MS/MS 2 2 2 0.97162 1.0643 10.531 6 Median 0.97516 1.0448 6.6199 2 0 Median 1.1465 1.0739 22.059 2 0 Median 0.93677 1.0644 4.0251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37596000 18603000 18993000 23885000 11600000 12285000 5607400 2468500 3138800 8103700 4534500 3569200 0 0 0 0 0 0 0 0 0 17864 1131 18619 93198;93199;93200;93201;93202;93203 94896;94897;94898;94899;94900;94901 94900 6 KLPVVSSVVK NSEKMSMEDENFRKRKLPVVSSVVKVKKFN NFRKRKLPVVSSVVKVKKFNHDGEEEEEDD R K L V K V 0 0 0 0 0 0 0 0 0 0 1 2 0 0 1 2 0 0 0 4 0 0 10 1 1054.675 Q6PJT7;H0YJA2;G3V256;G3V5I6 Q6PJT7 295 304 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 2 0.06681 28.956 By matching By matching By MS/MS By matching 2 1 3 2 0.85015 0.80337 20.348 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61839 0.70454 6.0792 2 0 Median 1.0113 0.98798 NaN 1 0 Median 0.92702 1.0382 22.273 3 0 Median 0.85757 0.76942 14.412 2 0 Median 20023000 10250000 9773100 0 0 0 0 0 0 5332700 3179000 2153700 957340 422560 534770 10772000 5214300 5557300 2961200 1433900 1527400 17865 3175 18620 93204;93205;93206;93207;93208;93209;93210;93211 94902 94902 1 KLQAALINR HEFDLLKKENEQRKRKLQAALINRKELLQR NEQRKRKLQAALINRKELLQRVSRLEEELA R K L N R K 2 1 1 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1025.6346 Q14789;E7EU81;H0Y867 Q14789 994 1002 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0084796 56.011 By MS/MS By MS/MS 1 2 1.2498 1.1654 11.125 3 Median 1.1253 1.1436 NaN 1 0 Median 1.3402 1.2768 12.911 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6242000 2697000 3545000 1341700 569230 772440 4900300 2127800 2772500 0 0 0 0 0 0 0 0 0 0 0 0 17866 2900 18621 93212;93213;93214 94903;94904 94903 2 KLQAALISR EEIGEESRAKQQIQRKLQAALISRKEALKE KQQIQRKLQAALISRKEALKENKSLQEELS R K L S R K 2 1 0 0 0 1 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 1 998.62366 Q14789;E7EU81 Q14789 1484 1492 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0011161 98.033 By MS/MS By MS/MS 1 2 1.1546 1.1893 23.614 3 Median 1.1546 1.1893 NaN 1 0 Median 1.3639 1.2869 32.768 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17127000 8209800 8916700 5113100 2472600 2640500 12013000 5737300 6276200 0 0 0 0 0 0 0 0 0 0 0 0 17867 2900 18622 93215;93216;93217 94905;94906;94907;94908 94908 4 KLQDVFEFR YKYNPPDHDVVAMARKLQDVFEFRYAKMPD VVAMARKLQDVFEFRYAKMPDEPLEPGPLP R K L F R Y 0 1 0 1 0 1 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 9 1 1180.6241 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2 H0Y6K2 447 455 BRD2 Bromodomain-containing protein 2 yes no 2;3 0.0022514 79.906 By MS/MS By matching By MS/MS 1 3 2 1.4883 1.2762 49.657 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1264 1.2762 NaN 1 0 Median 1.5471 1.2204 68.926 3 0 Median 1.4883 1.6373 NaN 1 0 Median NaN NaN NaN 0 0 Median 32672000 13552000 19120000 0 0 0 0 0 0 14680000 7120000 7559500 2306500 873780 1432700 15686000 5558300 10128000 0 0 0 17868 279 18623 93218;93219;93220;93221;93222;93223 94909;94910;94911 94909 3 KLQDVFEMR YKYNPPDHEVVAMARKLQDVFEMRFAKMPD VVAMARKLQDVFEMRFAKMPDEPEEPVVAV R K L M R F 0 1 0 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 9 1 1164.5961 O60885;M0QZD9;Q15059 O60885 445 453 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 no no 2 0.001319 90.135 By MS/MS By MS/MS 1 1 0.88204 1.0126 8.8166 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89941 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86499 0.95145 NaN 1 0 Median NaN NaN NaN 0 0 Median 29369000 15044000 14326000 0 0 0 0 0 0 18932000 9355000 9576900 0 0 0 10437000 5688700 4748600 0 0 0 17869 1638;2923 18624 93224;93225 94912;94913;94914;94915 94913 4 KLQEALTSR EKILALEKEKEQLQKKLQEALTSRKAILKK KEQLQKKLQEALTSRKAILKKAQEKERHLR K K L S R K 1 1 0 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 1 1044.5928 Q14789;E7EU81 Q14789 1179 1187 GOLGB1 Golgin subfamily B member 1 yes no 2 0.040455 45.161 By MS/MS 1 0.69999 0.67309 NaN 1 Median NaN NaN NaN 0 0 Median 0.69999 0.67309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1926500 1057100 869340 0 0 0 1926500 1057100 869340 0 0 0 0 0 0 0 0 0 0 0 0 17870 2900 18625 93226 94916 94916 1 KLQEEELLATQVDMR MAHRDQEWYDAEIARKLQEEELLATQVDMR KLQEEELLATQVDMRAAQVAQDEEIARLLM R K L M R A 1 1 0 1 0 2 3 0 0 0 3 1 1 0 0 0 1 0 0 1 0 0 15 1 1801.9244 Q8IVM0 Q8IVM0 181 195 CCDC50 Coiled-coil domain-containing protein 50 yes yes 3 0.015454 32.152 By MS/MS 1 1.0644 1.158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0644 1.158 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5199900 2530700 2669200 0 0 0 0 0 0 5199900 2530700 2669200 0 0 0 0 0 0 0 0 0 17871 3318 18626 93227 94917 94917 1 KLQEQEVFFK KLRPRKKTLEEEFARKLQEQEVFFKMTGES EEFARKLQEQEVFFKMTGESECLNPSTQSR R K L F K M 0 0 0 0 0 2 2 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 10 1 1294.6921 Q9H2G2 Q9H2G2 1196 1205 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.00059491 75.378 By MS/MS 1 0.97821 0.94349 NaN 1 Median NaN NaN NaN 0 0 Median 0.97821 0.94349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4381200 2093700 2287600 0 0 0 4381200 2093700 2287600 0 0 0 0 0 0 0 0 0 0 0 0 17872 3942 18627 93228 94918 94918 1 KLQEQLMGAVVMEK KGSDSDSEGDNPEKKKLQEQLMGAVVMEKP KKLQEQLMGAVVMEKPNIRWNDVAGLEGAK K K L E K P 1 0 0 0 0 2 2 1 0 0 2 2 2 0 0 0 0 0 0 2 0 0 14 1 1602.8473 Q9UN37;I3L4J1 Q9UN37 108 121 VPS4A Vacuolar protein sorting-associated protein 4A yes no 3 0.064474 19.839 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17873 4339 18628 93229 94919 94919 1 KLQESTQTVQSLHGSSR RRIRRLEQEKLELSRKLQESTQTVQSLHGS QESTQTVQSLHGSSRALSNSNRDKEIKKLN R K L S R A 0 1 0 0 0 3 1 1 1 0 2 1 0 0 0 4 2 0 0 1 0 0 17 1 1884.9654 Q9Y5S2 Q9Y5S2 460 476 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 3 0.020856 16.123 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0719 1.1486 30.783 4 Median 0.64578 0.65373 NaN 1 0 Median 1.3475 1.299 NaN 1 0 Median 0.96411 1.1466 NaN 1 0 Median 1.1918 1.1506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6980900 4344700 2636200 3796300 2987000 809290 724700 240850 483860 1785300 791360 993940 674550 325430 349130 0 0 0 0 0 0 17874 4468 18629 93230;93231;93232;93233 94920;94921;94922 94922 3 KLQETQMSTTSKLEEAEHK EKEQKLQNDFAEKERKLQETQMSTTSKLEE TQMSTTSKLEEAEHKVQSLQTALEKTRTEL R K L H K V 1 0 0 0 0 2 4 0 1 0 2 3 1 0 0 2 3 0 0 0 0 0 19 2 2217.0947 Q13948;A0A2R8Y8D0;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 189 207 CUX1 Protein CASP no no 4 4.2582E-05 41.53 By MS/MS 1 0.93808 1.0868 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93808 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6336400 3731100 2605400 0 0 0 0 0 0 6336400 3731100 2605400 0 0 0 0 0 0 0 0 0 17875 388;2847 18630 93234 94923;94924 94924 2 KLQEVDSLWK ETSVGYAIFKVLNEKKLQEVDSLWKEFETP VLNEKKLQEVDSLWKEFETPEKANKIVKLK K K L W K E 0 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 10 1 1244.6765 Q9Y2X3;F8WED0 Q9Y2X3 21 30 NOP58 Nucleolar protein 58 yes no 2 0.00087554 72.848 By matching By MS/MS 1 1 1.3998 1.4556 44.501 2 Median 1.9267 1.9938 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0171 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11237000 4987600 6249600 1779500 543820 1235600 0 0 0 9457700 4443800 5013900 0 0 0 0 0 0 0 0 0 17876 4396 18631 93235;93236 94925 94925 1 KLQEVDSLWKEFETPEK ETSVGYAIFKVLNEKKLQEVDSLWKEFETP QEVDSLWKEFETPEKANKIVKLKHFEKFQD K K L E K A 0 0 0 1 0 1 4 0 0 0 2 3 0 1 1 1 1 1 0 1 0 0 17 2 2105.0681 Q9Y2X3;F8WED0 Q9Y2X3 21 37 NOP58 Nucleolar protein 58 yes no 3 0.0014795 31.42 By MS/MS By matching 1 1 0.90866 0.93858 3.8922 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83825 0.9131 NaN 1 0 Median 0.98498 0.96477 NaN 1 0 Median 5522600 3086300 2436300 0 0 0 0 0 0 0 0 0 0 0 0 5175800 2921200 2254600 346760 165140 181620 17877 4396 18632 93237;93238 94926;94927 94927 2 KLQFSLK RKKKVVHRTATADDKKLQFSLKKLGVNNIS RTATADDKKLQFSLKKLGVNNISGIEEVNM K K L L K K 0 0 0 0 0 1 0 0 0 0 2 2 0 1 0 1 0 0 0 0 0 0 7 1 862.52764 P20290 P20290 87 93 BTF3 Transcription factor BTF3 yes yes 2 0.003922 106.36 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1325 1.4498 24.184 6 Linear 1.3323 1.3433 4.984 2 0 Median 0.98853 0.86557 4.0313 2 0 Median 1.3165 1.3126 NaN 1 0 Median 0.94372 0.8496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33309000 14907000 18401000 14574000 6259400 8314400 8373000 4151200 4221800 7606700 3124600 4482100 2755100 1372000 1383100 0 0 0 0 0 0 17878 2076 18633 93239;93240;93241;93242;93243;93244 94928;94929;94930 94930 3 KLQIGVK CLSAVATATGAEGKRKLQIGVKKRVDHCPI ATGAEGKRKLQIGVKKRVDHCPIKSRKGDV R K L V K K 0 0 0 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 0 7 1 784.51707 A0A494C1N0;P26885 A0A494C1N0 59 65 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes no 2 0.024481 66.993 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3186600 0 3186600 0 0 0 3186600 0 3186600 0 0 0 0 0 0 0 0 0 0 0 0 17879 472 18634 93245 94931 94931 1 KLQLEETMPSPYGR SGKAIKGKVGKPKVKKLQLEETMPSPYGRR KKLQLEETMPSPYGRRIIPEITAMKADASK K K L G R R 0 1 0 0 0 1 2 1 0 0 2 1 1 0 2 1 1 0 1 0 0 0 14 1 1647.829 Q02880 Q02880 1227 1240 TOP2B DNA topoisomerase 2-beta yes yes 3 0.00037842 59.607 By MS/MS 1 0.57857 0.69357 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57857 0.69357 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10330000 6342100 3987700 0 0 0 0 0 0 10330000 6342100 3987700 0 0 0 0 0 0 0 0 0 17880 2704 18635 93246 94932 94932 1 KLQLGIEEDLAEPSK WYKFNDEDIEKMEGKKLQLGIEEDLAEPSK KLQLGIEEDLAEPSKSQTRKPKCGKGTHCS K K L S K S 1 0 0 1 0 1 3 1 0 1 3 2 0 0 1 1 0 0 0 0 0 0 15 1 1668.8934 Q86UV5 Q86UV5 381 395 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2;3 3.4916E-09 101.6 By matching By MS/MS By MS/MS 1 2 1 0.77367 0.84098 31.015 4 Median 0.47604 0.47699 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77367 0.89663 8.6836 2 0 Median 0.8805 0.83874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32490000 18618000 13872000 3165800 2098300 1067400 0 0 0 27141000 15328000 11813000 2183100 1191800 991300 0 0 0 0 0 0 17881 3281 18636 93247;93248;93249;93250 94933;94934;94935;94936;94937;94938 94936 6 KLQLSGHAMPR LITYVELPQYEETFRKLQLSGHAMPRLAVT ETFRKLQLSGHAMPRLAVTNTTMTGTVLKM R K L P R L 1 1 0 0 0 1 0 1 1 0 2 1 1 0 1 1 0 0 0 0 0 0 11 1 1236.6761 Q13586;G0XQ39;E9PIQ8;E9PRZ7;E9PR09;E9PN27 Q13586 156 166 STIM1 Stromal interaction molecule 1 yes no 3 0.018411 38.402 By MS/MS By MS/MS 1 1 0.42781 0.41945 90.295 2 Median NaN NaN NaN 0 0 Median 0.22191 0.22151 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82475 0.79428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3537900 2455900 1082000 0 0 0 3046100 2283100 762990 0 0 0 491830 172850 318980 0 0 0 0 0 0 17882 2827 18637 93251;93252 94939;94940 94939 2 KLQSQYASSEATISQLR LERERESEKLKDECKKLQSQYASSEATISQ QSQYASSEATISQLRSELAKGPQEVAVYVQ K K L L R S 2 1 0 0 0 3 1 0 0 1 2 1 0 0 0 4 1 0 1 0 0 0 17 1 1908.9905 Q15075 Q15075 257 273 EEA1 Early endosome antigen 1 yes yes 3 3.2086E-08 95.767 By MS/MS By matching 1 1 0.69475 0.66838 56.793 2 Median 0.99319 0.99869 NaN 1 0 Median 0.48598 0.44732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10948000 5725500 5222600 9719100 4809500 4909600 1229000 916020 312990 0 0 0 0 0 0 0 0 0 0 0 0 17883 2926 18638 93253;93254 94941 94941 1 KLRDEINLAK EEHRTVEVEKVHLEKKLRDEINLAKQEAQR VHLEKKLRDEINLAKQEAQRLKELREGTEN K K L A K Q 1 1 1 1 0 0 1 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 2 1198.7034 Q13586;E9PNJ4;G0XQ39;H0YDB2 Q13586 285 294 STIM1 Stromal interaction molecule 1 yes no 3 0.062983 15.629 By matching By matching By MS/MS 1 2 2 1.2906 1.4718 39.454 5 Median 0.7226 0.79589 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94278 1.1165 39.079 2 0 Median 1.648 1.7578 9.0392 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4158100 1819800 2338300 1604800 828860 775930 0 0 0 1737700 712030 1025700 815600 278880 536710 0 0 0 0 0 0 17884 2827 18639 93255;93256;93257;93258;93259 94942 94942 1 KLSDDNTIGKEEIQQR AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ LSDDNTIGKEEIQQRLAQFVEHWKELKQLA K K L Q R L 0 1 1 2 0 2 2 1 0 2 1 2 0 0 0 1 1 0 0 0 0 0 16 2 1872.9541 A0A0D9SF54;Q13813 Q13813 1829 1844 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 3.3387E-10 101.42 By matching By MS/MS By MS/MS By MS/MS 1 2 2 5 0.9974 1.1412 22.235 10 Median 1.5042 1.5901 NaN 1 0 Median 1.24 1.3211 20.504 2 0 Median 0.8329 1.1004 4.9414 2 0 Median 0.96571 1.0279 21.367 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53046000 26177000 26869000 1755600 792170 963400 16787000 6785000 10002000 23399000 11711000 11688000 11105000 6889500 4215100 0 0 0 0 0 0 17885 264;2838 18640 93260;93261;93262;93263;93264;93265;93266;93267;93268;93269 94943;94944;94945;94946;94947;94948;94949;94950;94951;94952;94953;94954;94955;94956;94957 94949 15 KLSDLQTQLSHEIQSDVLTIN RPETIVLSALSGLKKKLSDLQTQLSHEIQS TQLSHEIQSDVLTIN_______________ K K L I N - 0 0 1 2 0 3 1 0 1 2 4 1 0 0 0 3 2 0 0 1 0 0 21 1 2381.2438 P19387 P19387 255 275 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 3 0.050554 7.8971 By MS/MS By matching By matching 1 1 1 0.87372 0.8665 8.8898 3 Median NaN NaN NaN 0 0 Median 1.1323 0.95931 NaN 1 0 Median 0.81963 0.80357 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87372 0.8665 NaN 1 0 Median NaN NaN NaN 0 0 Median 2631200 1179200 1451900 0 0 0 1287200 553950 733300 772490 337620 434870 0 0 0 571420 287650 283780 0 0 0 17886 2065 18641 93270;93271;93272 94958 94958 1 KLSEEEILENPDLFLTSEATDYGR EALHLIDEMDLNGDKKLSEEEILENPDLFL NPDLFLTSEATDYGRQLHDDYFYHDEL___ K K L G R Q 1 1 1 2 0 0 5 1 0 1 4 1 0 1 1 2 2 0 1 0 0 0 24 1 2768.3392 Q14257;A8MXP8 Q14257 282 305 RCN2 Reticulocalbin-2 yes no 3 0.0542 6.7232 By matching By MS/MS 1 1 1.1598 1.1942 31.451 2 Median NaN NaN NaN 0 0 Median 1.0243 0.95604 NaN 1 0 Median 1.3132 1.4916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1629500 795740 833790 0 0 0 492220 244330 247890 1137300 551410 585900 0 0 0 0 0 0 0 0 0 17887 2869 18642 93273;93274 94959 94959 1 KLSELLR KNIKLGIHEDSQNRKKLSELLRYYTSASGD HEDSQNRKKLSELLRYYTSASGDEMVSLKD K K L L R Y 0 1 0 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 1 857.53345 P07900 P07900 458 464 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.0038116 120.9 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1379 1.2623 20.132 5 Median 1.2493 1.2853 NaN 1 0 Median 1.3537 1.2854 19.631 2 0 Median 1.1109 1.2623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99037 0.86404 NaN 1 0 Median 105990000 48974000 57015000 31400000 14005000 17395000 70108000 32935000 37173000 3025700 1408500 1617200 0 0 0 0 0 0 1455100 624930 830170 17888 1894 18643 93275;93276;93277;93278;93279 94960;94961;94962;94963;94964 94964 5 KLSFLPR EEERLAWEQQEPGERKLSFLPRKFPSLRAV EQQEPGERKLSFLPRKFPSLRAVPAYGRFI R K L P R K 0 1 0 0 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 7 1 859.52797 Q14137 Q14137 339 345 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.030398 60.788 By MS/MS By matching 3 2 1.106 1.1453 76.806 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.106 1.1453 11.015 3 1 Median 0.5248 0.51933 125.25 2 0 Median 23352000 10349000 13002000 0 0 0 0 0 0 0 0 0 0 0 0 16234000 6928700 9305600 7117400 3420800 3696600 17889 2856 18644 93280;93281;93282;93283;93284 94965;94966 94965 2 KLSQMILDK HISSLIKLSKADVERKLSQMILDKKFHGIL KADVERKLSQMILDKKFHGILDQGEGVLII R K L D K K 0 0 0 1 0 1 0 0 0 1 2 2 1 0 0 1 0 0 0 0 0 0 9 1 1074.6107 O00231 O00231 364 372 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.0037954 70.399 By matching By MS/MS 1 2 1.0602 0.99724 4.2523 3 Median 0.97563 0.93575 NaN 1 0 Median 1.0909 1.0058 1.2041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13016000 5823100 7192600 5954900 2704400 3250500 7060700 3118700 3942100 0 0 0 0 0 0 0 0 0 0 0 0 17890 1448 18645 93285;93286;93287 94967;94968 94968 2 KLSQMILDKK HISSLIKLSKADVERKLSQMILDKKFHGIL ADVERKLSQMILDKKFHGILDQGEGVLIIF R K L K K F 0 0 0 1 0 1 0 0 0 1 2 3 1 0 0 1 0 0 0 0 0 0 10 2 1202.7057 O00231 O00231 364 373 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2;3 0.002498 53.756 By MS/MS By matching By MS/MS By MS/MS By matching By matching 4 1 1 2 1 1 1.2535 1.2312 29.516 10 Median 1.1936 1.1957 9.674 4 0 Median 1.3536 1.2814 NaN 1 0 Median 1.709 2.0046 NaN 1 0 Median 1.4159 1.361 13.311 2 0 Median 2.4254 2.6419 NaN 1 0 Median 1.1638 1.1399 NaN 1 0 Median 30852000 13785000 17067000 19420000 9107000 10313000 1988700 793650 1195000 1553500 597400 956110 5291800 2352000 2939800 1911400 716140 1195200 685860 218600 467270 17891 1448 18646 93288;93289;93290;93291;93292;93293;93294;93295;93296;93297 94969;94970;94971;94972;94973 94973 5 KLSSAMSAAK VTTVQQRGAAVIKARKLSSAMSAAKAICDH VIKARKLSSAMSAAKAICDHVRDIWFGTPE R K L A K A 3 0 0 0 0 0 0 0 0 0 1 2 1 0 0 3 0 0 0 0 0 0 10 1 992.53247 P40925;B9A041;B8ZZ51 P40925 239 248 MDH1 Malate dehydrogenase, cytoplasmic yes no 2 0.013797 44.863 By MS/MS By matching 2 1 1.0761 1.0343 1.5233 3 Plateau 1.0684 1.0206 2.0773 2 0 Median 1.1406 1.0277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7347600 3431600 3916000 4838100 2309000 2529100 2509500 1122600 1386900 0 0 0 0 0 0 0 0 0 0 0 0 17892 2291 18647 93298;93299;93300 94974 94974 1 KLSSAVVFGGGEAR FKGKTFIFLNAKQHKKLSSAVVFGGGEARL KKLSSAVVFGGGEARLITEENEEEHNFFLA K K L A R L 2 1 0 0 0 0 1 3 0 0 1 1 0 1 0 2 0 0 0 2 0 0 14 1 1376.7412 O60934;A0A0C4DG07 O60934 237 250 NBN Nibrin yes no 3 0.018186 29.733 By matching By MS/MS By MS/MS 1 2 1 1.0693 1.0539 32.29 4 Median 0.69763 0.6837 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1346 1.217 28.715 2 1 Median 1.1659 1.1181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12013000 5238200 6775200 2579200 1208000 1371200 0 0 0 4820200 2032600 2787600 4614000 1997600 2616400 0 0 0 0 0 0 17893 1641 18648 93301;93302;93303;93304 94975;94976 94976 1 KLSSETYSQAK EDVKILLTQENPFFRKLSSETYSQAKDLAK PFFRKLSSETYSQAKDLAKGSIVLKYEPDS R K L A K D 1 0 0 0 0 1 1 0 0 0 1 2 0 0 0 3 1 0 1 0 0 0 11 1 1240.6299 Q08J23 Q08J23 640 650 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.05651 28.013 By matching By MS/MS 1 1 1.2461 1.2505 9.8943 2 Median 1.1187 1.166 NaN 1 0 Median 1.388 1.3412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1279100 544460 734600 330040 162750 167290 949020 381710 567310 0 0 0 0 0 0 0 0 0 0 0 0 17894 2745 18649 93305;93306 94977 94977 1 KLSSNAVSQITR EEIQDVSCAWKELNRKLSSNAVSQITRMCL LNRKLSSNAVSQITRMCLLKGNMGVCFDVP R K L T R M 1 1 1 0 0 1 0 0 0 1 1 1 0 0 0 3 1 0 0 1 0 0 12 1 1302.7256 Q9BQ39;A0A087WVC1 Q9BQ39 611 622 DDX50 ATP-dependent RNA helicase DDX50 yes no 2;3 1.0085E-05 120.06 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1 1.5322 1.5148 14.803 7 Median NaN NaN NaN 0 0 Median 1.6456 1.6554 NaN 1 0 Median 1.3056 1.3877 22.663 2 0 Median 1.5568 1.4902 NaN 1 0 Median 1.2148 1.3392 17.421 2 1 Median 1.8634 1.64 NaN 1 0 Median 15913000 6850500 9062700 0 0 0 309700 103670 206030 4041300 1611100 2430300 840910 283640 557260 10230000 4705100 5525100 491010 147000 344010 17895 3781 18650 93307;93308;93309;93310;93311;93312;93313 94978;94979;94980;94981;94982;94983 94980 6 KLSSWDQAETPGHTPSLR RWDQTADQTPGATPKKLSSWDQAETPGHTP SWDQAETPGHTPSLRWDETPGRAKGSETPG K K L L R W 1 1 0 1 0 1 1 1 1 0 2 1 0 0 2 3 2 1 0 0 0 0 18 1 2008.9967 O75533 O75533 214 231 SF3B1 Splicing factor 3B subunit 1 yes yes 3;4 1.0448E-14 125.73 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 5 2 0.74659 0.81111 25.956 14 Median 0.81296 0.84472 5.5633 2 0 Median 0.41102 0.39036 NaN 1 0 Median 0.77825 0.88322 3.9235 2 0 Median 0.85768 0.82424 1.2293 2 0 Median 0.68095 0.77458 26.709 5 1 Median 0.82018 0.71496 19.144 2 0 Median 196330000 109800000 86522000 6833400 3588100 3245200 1124600 763770 360840 95237000 51824000 43413000 10529000 5784500 4744300 79215000 46080000 33136000 3387100 1763700 1623400 17896 1683 18651 93314;93315;93316;93317;93318;93319;93320;93321;93322;93323;93324;93325;93326;93327 94984;94985;94986;94987;94988;94989;94990;94991;94992;94993;94994;94995;94996;94997 94988 14 KLSTIALALGVER ELRNEDVQLRLNSIKKLSTIALALGVERTR IKKLSTIALALGVERTRSELLPFLTDTIYD K K L E R T 2 1 0 0 0 0 1 1 0 1 3 1 0 0 0 1 1 0 0 1 0 0 13 1 1369.8293 P30153;C9J9C1;E9PPI5;E9PNM7;E9PHZ6;P30154 P30153 34 46 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 3 0.00035471 53.001 By MS/MS By MS/MS By matching 1 1 1 1.2877 1.4388 20.759 3 Median 1.1951 1.1999 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2877 1.4388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7563 1.8156 NaN 1 0 Median NaN NaN NaN 0 0 Median 11632000 5206500 6425700 6674400 3083100 3591400 0 0 0 4459600 1953700 2505900 0 0 0 498220 169730 328490 0 0 0 17897 2190;2191 18652 93328;93329;93330 94998;94999;95000 94998 3 KLTATPTPLGGMTGFHMQTEDR LPPPAGYVPIRTPARKLTATPTPLGGMTGF PLGGMTGFHMQTEDRTMKSVNDQPSGNLPF R K L D R T 1 1 0 1 0 1 1 3 1 0 2 1 2 1 2 0 5 0 0 0 0 0 22 1 2388.1566 O75533 O75533 430 451 SF3B1 Splicing factor 3B subunit 1 yes yes 3;4 1.1147E-13 85.35 By MS/MS By matching By MS/MS 4 2 7 0.71533 0.7869 17.222 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69236 0.78522 7.396 4 0 Median 0.9072 0.87184 9.8609 2 0 Median 0.69177 0.78462 22.002 7 0 Median NaN NaN NaN 0 0 Median 160060000 89825000 70230000 0 0 0 0 0 0 83761000 48101000 35660000 2623800 1429700 1194100 73671000 40294000 33377000 0 0 0 17898 1683 18653;18654 93331;93332;93333;93334;93335;93336;93337;93338;93339;93340;93341;93342;93343 95001;95002;95003;95004;95005;95006;95007;95008;95009;95010 95004 543 10 KLTDIINNDHENVK STVKMWVFEETVNGRKLTDIINNDHENVKY RKLTDIINNDHENVKYLPGHKLPENVVAMS R K L V K Y 0 0 3 2 0 0 1 0 1 2 1 2 0 0 0 0 1 0 0 1 0 0 14 1 1651.8529 Q8N335;C9K0P5;C9JFA7;C9JM46 Q8N335 51 64 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] yes no 3 0.00024982 50.843 By MS/MS 1 1.6224 1.4618 NaN 1 Median NaN NaN NaN 0 0 Median 1.6224 1.4618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2852200 951840 1900400 0 0 0 2852200 951840 1900400 0 0 0 0 0 0 0 0 0 0 0 0 17899 3364 18655 93344 95011 95011 1 KLTDTSKDEENHEESESLQEDMLGNR KLLNKVVLRESCFYRKLTDTSKDEENHEES HEESESLQEDMLGNRLLLPTPTVKQESKDV R K L N R L 0 1 2 3 0 1 6 1 1 0 3 2 1 0 0 3 2 0 0 0 0 0 26 2 3033.3469 Q8IX12;A0A0C4DGG8 Q8IX12 978 1003 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 3;4;5 4.8615E-20 72.805 By MS/MS By matching 3 1 0.94618 1.0782 32.048 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74871 0.85314 34.86 3 0 Median 1.1957 1.3628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65222000 35079000 30143000 0 0 0 0 0 0 60825000 33105000 27720000 4397200 1973600 2423500 0 0 0 0 0 0 17900 3331 18656 93345;93346;93347;93348 95012;95013;95014;95015 95012 4 KLTELGTVDPK LTLQEKKEKIQTGLKKLTELGTVDPKNKYQ TGLKKLTELGTVDPKNKYQELINDIARDIR K K L P K N 0 0 0 1 0 0 1 1 0 0 2 2 0 0 1 0 2 0 0 1 0 0 11 1 1199.6762 P46940;H0YLE8 P46940 1465 1475 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00022792 81.525 By matching By MS/MS 1 1 0.86965 0.84741 8.9305 2 Median 0.91835 0.90265 NaN 1 0 Median 0.82353 0.79556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9011300 4537300 4474000 5464100 2625300 2838900 3547200 1912100 1635100 0 0 0 0 0 0 0 0 0 0 0 0 17901 2350 18657 93349;93350 95016;95017 95017 2 KLTFEYR YIGFILTLNEGVKGKKLTFEYRVSEAIEKL LNEGVKGKKLTFEYRVSEAIEKLVALLNTL K K L Y R V 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 7 1 955.51272 A6PVN5;Q15257;F6WIT2;Q5T949;Q5T948;A6PVN9;A6PVN6;A6PVN7;A6PVN8 A6PVN5 69 75 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 2 0.031919 59.205 By MS/MS By MS/MS 1 2 1.0098 1.0818 18.569 3 Median 1.0098 1.0818 NaN 1 1 Median 1.1521 1.0586 26.201 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9136200 4356800 4779400 5728100 2900300 2827800 3408100 1456500 1951600 0 0 0 0 0 0 0 0 0 0 0 0 17902 533 18658 93351;93352;93353 95018;95019;95020 95019 3 KLTMEQIAEK WLLRVELDRKHMTDRKLTMEQIAEKINAGF HMTDRKLTMEQIAEKINAGFGDDLNCIFND R K L E K I 1 0 0 0 0 1 2 0 0 1 1 2 1 0 0 0 1 0 0 0 0 0 10 1 1189.6377 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1225 1234 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.01004 48.284 By MS/MS By MS/MS 1 1 1.299 1.2071 27.209 2 Median NaN NaN NaN 0 0 Median 1.5119 1.4632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.116 0.99586 NaN 1 0 Median 4416100 1647400 2768700 0 0 0 2782400 1094400 1688000 0 0 0 0 0 0 0 0 0 1633700 552970 1080700 17903 486 18659 93354;93355 95021;95022 95021 2 KLTMVVLSSEK DEHKREIAEAKQIVRKLTMVVLSSEKMDER QIVRKLTMVVLSSEKMDEREKEKEKEEEKV R K L E K M 0 0 0 0 0 0 1 0 0 0 2 2 1 0 0 2 1 0 0 2 0 0 11 1 1233.7003 Q8NI27;A0A0C4DG98 Q8NI27 312 322 THOC2 THO complex subunit 2 yes no 2;3 0.00028078 100.55 By MS/MS By MS/MS 1 2 1.0517 1.0717 6.6389 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97007 1.1249 NaN 1 0 Median 1.0985 1.0283 5.8582 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22416000 10761000 11655000 0 0 0 0 0 0 19143000 9381100 9762200 3272300 1379400 1892900 0 0 0 0 0 0 17904 3448 18660 93356;93357;93358 95023;95024;95025;95026;95027 95023 5 KLTPITYPQGLAMAK DLRDDKDTIEKLKEKKLTPITYPQGLAMAK KLTPITYPQGLAMAKEIGAVKYLECSALTQ K K L A K E 2 0 0 0 0 1 0 1 0 1 2 2 1 0 2 0 2 0 1 0 0 0 15 1 1630.9116 P63000 P63000 133 147 RAC1 Ras-related C3 botulinum toxin substrate 1 yes yes 2;3 1.2075E-13 174.72 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 8 3 4 3 2 2 0.82061 0.79624 16.319 22 Median 0.77669 0.78766 12.364 8 0 Median 0.91096 0.80577 13.427 3 0 Median 0.7413 0.73721 13.467 4 0 Median 0.89441 0.80493 6.9293 3 0 Median 0.90402 0.99851 17.925 2 0 Median 0.94445 0.79663 37.242 2 0 Median 291320000 154820000 136500000 190110000 101980000 88130000 15362000 7352800 8009200 72346000 38547000 33798000 4640400 2526900 2113500 6881500 3555500 3326000 1985700 861330 1124400 17905 2615 18661;18662 93359;93360;93361;93362;93363;93364;93365;93366;93367;93368;93369;93370;93371;93372;93373;93374;93375;93376;93377;93378;93379;93380 95028;95029;95030;95031;95032;95033;95034;95035;95036;95037;95038;95039;95040;95041;95042;95043;95044 95034 1279 17 KLTVEEAFK AQAATGFIIDPVENRKLTVEEAFKAGMFGK DPVENRKLTVEEAFKAGMFGKETYVKLLSA R K L F K A 1 0 0 0 0 0 2 0 0 0 1 2 0 1 0 0 1 0 0 1 0 0 9 1 1063.5914 P58107;A0A075B730 P58107 1622 1630 EPPK1 Epiplakin yes no 2 0.0013929 87.258 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1665 1.1764 18.135 5 Median 1.2196 1.2782 11.739 2 1 Median 1.0383 0.99407 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0415 0.91448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5535 1.3327 NaN 1 0 Median 49034000 20530000 28504000 16255000 7252600 9002400 30991000 12721000 18270000 0 0 0 752580 306450 446130 0 0 0 1035000 249340 785700 17906 2520 18663 93381;93382;93383;93384;93385 95045;95046;95047 95047 3 KLTVNPGTK YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K K L T K S 0 0 1 0 0 0 0 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 9 1 956.56548 P09874 P09874 654 662 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0048624 65.224 By matching By matching By MS/MS By MS/MS By matching By matching 2 1 4 2 2 2 1.061 1.0107 15.064 13 Median 0.87844 0.92698 8.2853 2 0 Median 1.2645 1.2205 NaN 1 0 Median 0.86958 0.96615 23.792 4 0 Median 1.133 1.093 11.065 2 0 Median 1.0247 1.1046 1.4881 2 0 Median 1.2177 1.0957 14.207 2 0 Median 8190700 4022400 4168200 426560 221720 204830 684690 293600 391090 3454200 1806600 1647600 2389900 1133800 1256100 672730 312360 360370 562550 254290 308260 17907 1922 18664 93386;93387;93388;93389;93390;93391;93392;93393;93394;93395;93396;93397;93398 95048;95049;95050;95051 95051 4 KLVAIVDPHIK PQPRTMLERLASKRRKLVAIVDPHIKVDSG SKRRKLVAIVDPHIKVDSGYRVHEELRNLG R K L I K V 1 0 0 1 0 0 0 0 1 2 1 2 0 0 1 0 0 0 0 2 0 0 11 1 1231.7652 E9PKU7;Q14697;F5H6X6 Q14697 462 472 GANAB Neutral alpha-glucosidase AB no no 2;3 0.00026156 77.379 By MS/MS By MS/MS By matching By MS/MS 4 4 1 1 0.99899 0.98793 20.426 10 Median 0.87896 0.91252 18.364 4 0 Median 1.138 1.0509 14.884 4 0 Median 1.1124 1.2728 NaN 1 0 Median 1.2708 1.2105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105960000 53204000 52756000 46255000 24766000 21489000 56820000 27332000 29488000 1802800 805900 996900 1081800 299280 782520 0 0 0 0 0 0 17908 2896;951 18665 93399;93400;93401;93402;93403;93404;93405;93406;93407;93408 95052;95053;95054;95055;95056;95057;95058;95059;95060 95057 9 KLVALQLR TELSINAEVYSLPSRKLVALQLRSIFIKYK VYSLPSRKLVALQLRSIFIKYKSKPFCEKL R K L L R S 1 1 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 1 939.62294 V9GZ55;K7ENR6;Q969U7;K7ER45 V9GZ55 92 99 PSMG2 Proteasome assembly chaperone 2 yes no 2 0.0098542 69.176 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.3164 1.1835 7.4604 5 Median 1.1151 1.1445 4.7358 2 0 Median 1.321 1.2322 NaN 1 0 Median 1.3164 1.3512 NaN 1 0 Median 1.3168 1.1656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18300000 7781500 10518000 13739000 5990600 7748500 2474900 961370 1513600 1731500 697150 1034400 354000 132470 221530 0 0 0 0 0 0 17909 1388 18666 93409;93410;93411;93412;93413 95061;95062;95063 95061 3 KLVEALCAAGHR VLEGVDRAGKSTQSRKLVEALCAAGHRAEL QSRKLVEALCAAGHRAELLRFPERSTEIGK R K L H R A 3 1 0 0 1 0 1 1 1 0 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1323.7081 P23919;G5E9E9;H7C3A4 P23919 25 36 DTYMK Thymidylate kinase yes no 3 0.0003814 51.013 By MS/MS 1 1.2233 1.1378 NaN 1 Median NaN NaN NaN 0 0 Median 1.2233 1.1378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795700 1232400 2563300 0 0 0 3795700 1232400 2563300 0 0 0 0 0 0 0 0 0 0 0 0 17910 2120 18667 93414 95064 95064 1 KLVESLPQEIK EIKNYIQGINLVQAKKLVESLPQEIKANVA VQAKKLVESLPQEIKANVAKAEAEKIKAAL K K L I K A 0 0 0 0 0 1 2 0 0 1 2 2 0 0 1 1 0 0 0 1 0 0 11 1 1282.7497 B4DLN1 B4DLN1 163 173 no no 2;3 1.4644E-14 183.03 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 3 4 2 2 1.0863 1.1008 30.613 17 Median 0.92747 0.91828 21.161 3 0 Median 1.2727 1.1257 9.7258 3 0 Plateau 0.98344 0.97453 25.61 3 0 Median 1.4784 1.333 21.594 4 0 Median 0.8817 0.96927 30.057 2 0 Median 2.2113 1.8652 36.329 2 0 Median 307270000 146560000 160710000 135950000 67146000 68803000 18421000 8424400 9996900 101010000 50071000 50939000 46688000 18682000 28006000 2254800 1123100 1131700 2948600 1115800 1832800 17911 598 18668 93415;93416;93417;93418;93419;93420;93421;93422;93423;93424;93425;93426;93427;93428;93429;93430;93431 95065;95066;95067;95068;95069;95070;95071;95072;95073;95074;95075;95076;95077;95078;95079;95080;95081;95082 95065 18 KLVGSVNLFSDENVPR ELFLLAQQKVPSKLKKLVGSVNLFSDENVP LVGSVNLFSDENVPRLVNVLKMAASSVKKD K K L P R L 0 1 2 1 0 0 1 1 0 0 2 1 0 1 1 2 0 0 0 3 0 0 16 1 1772.9421 Q9BQG0;I3L1L3 Q9BQG0 231 246 MYBBP1A Myb-binding protein 1A yes no 2;3 1.1721E-10 122.33 By MS/MS By MS/MS 2 2 0.90517 1.0263 9.8096 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90517 1.0263 1.1825 2 0 Median NaN NaN NaN 0 0 Median 0.912 1.0534 16.746 2 0 Median NaN NaN NaN 0 0 Median 36815000 19418000 17397000 0 0 0 0 0 0 31701000 16305000 15396000 0 0 0 5113800 3112900 2000900 0 0 0 17912 3789 18669 93432;93433;93434;93435 95083;95084;95085;95086 95083 4 KLVGTQHPLLTTAR CLLSDELSNIAMQVRKLVGTQHPLLTTARG RKLVGTQHPLLTTARGLVHDSWNSLQLRGL R K L A R G 1 1 0 0 0 1 0 1 1 0 3 1 0 0 1 0 3 0 0 1 0 0 14 1 1533.8991 Q86YH6 Q86YH6 86 99 PDSS2 Decaprenyl-diphosphate synthase subunit 2 yes yes 3 0.048463 12.285 By MS/MS 1 0.90657 0.97022 NaN 1 Median 0.90657 0.97022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1626200 799080 827070 1626200 799080 827070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17913 3306 18670 93436 95087 95087 1 KLVGYLDR HVTQPKDGGFCEVCKKLVGYLDRNLEKNST GFCEVCKKLVGYLDRNLEKNSTKQEILAAL K K L D R N 0 1 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 8 1 962.55492 Q5BJH1;C9JIZ6;P07602 Q5BJH1 130 137 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 2 0.016342 56.81 By MS/MS By matching 1 1 1.297 1.1403 1.8493 2 Median 1.1478 1.1255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4657 1.1553 NaN 1 0 Median 15866000 7374000 8491800 15293000 7145700 8147100 0 0 0 0 0 0 0 0 0 0 0 0 572960 228260 344700 17914 701 18671 93437;93438 95088 95088 1 KLVIIEGDLER HIAEEADRKYEEVARKLVIIEGDLERTEER EVARKLVIIEGDLERTEERAELAESRCREM R K L E R T 0 1 0 1 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 1 1283.7449 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 A0A087WWU8 132 142 TPM3 Tropomyosin alpha-3 chain no no 2;3 3.6652E-05 89.548 By matching By MS/MS By MS/MS 1 4 4 1.3463 1.247 126.16 9 Median 1.1979 1.2085 NaN 1 0 Median 1.5069 1.3759 9.5503 4 0 Median 0.87759 0.95403 200.92 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92385000 26187000 66198000 20456000 7498600 12958000 21127000 8516000 12611000 50802000 10172000 40630000 0 0 0 0 0 0 0 0 0 17915 63;1303 18672 93439;93440;93441;93442;93443;93444;93445;93446;93447 95089;95090;95091;95092;95093;95094;95095;95096 95093 8 KLVIIEGDLERTEER HIAEEADRKYEEVARKLVIIEGDLERTEER KLVIIEGDLERTEERAELAESRCREMDEQI R K L E R A 0 2 0 1 0 0 4 1 0 2 2 1 0 0 0 0 1 0 0 1 0 0 15 2 1798.9789 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 A0A087WWU8 132 146 TPM3 Tropomyosin alpha-3 chain no no 3 0.00011912 63.894 By MS/MS 1 1.2739 1.1798 NaN 1 Median NaN NaN NaN 0 0 Median 1.2739 1.1798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7833800 3043000 4790800 0 0 0 7833800 3043000 4790800 0 0 0 0 0 0 0 0 0 0 0 0 17916 63;1303 18673 93448 95097;95098 95097 2 KLVIIESDLER HIAEDADRKYEEVARKLVIIESDLERAEER EVARKLVIIESDLERAEERAELSEGQVRQL R K L E R A 0 1 0 1 0 0 2 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1313.7555 H0YKX5;H0YL42;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2 H0YKX5 92 102 TPM1 no no 2;3 0.00012303 98.943 By MS/MS By MS/MS By matching 2 2 1 0.8356 0.7575 28.217 5 Median NaN NaN NaN 0 0 Median 0.76593 0.69336 12.513 2 0 Median 0.9731 1.0582 4.4201 2 0 Median 0.61411 0.57955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18687000 10080000 8607400 0 0 0 4970800 2750700 2220100 12250000 6655300 5594500 1466800 674020 792760 0 0 0 0 0 0 17917 1193;1249 18674 93449;93450;93451;93452;93453 95099;95100;95101;95102;95103 95101 5 KLVILEGELER HIAEEADRKYEEVARKLVILEGELERAEER EVARKLVILEGELERAEERAEVSELKCGDL R K L E R A 0 1 0 0 0 0 3 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1297.7606 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 P67936 132 142 TPM4 Tropomyosin alpha-4 chain no no 3 0.00039468 57.836 By MS/MS By MS/MS By matching 1 2 1 1.0006 0.98672 3.6962 4 Median 0.99948 0.9928 NaN 1 0 Median 1.0297 0.95253 5.1433 2 0 Median 0.90289 0.98563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8883300 4362400 4520900 2926100 1318500 1607600 3205800 1441800 1764000 2751400 1602100 1149300 0 0 0 0 0 0 0 0 0 + 17918 2629 18675 93454;93455;93456;93457 95104;95105;95106 95104 3 KLVIPSELGYGER GWDQGLLGMCEGEKRKLVIPSELGYGERGA KRKLVIPSELGYGERGAPPKIPGGATLVFE R K L E R G 0 1 0 0 0 0 2 2 0 1 2 1 0 0 1 1 0 0 1 1 0 0 13 1 1459.8035 A0A494C1N0;P26885 A0A494C1N0 132 144 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes no 2;3 1.1032E-05 93.096 By MS/MS By MS/MS By MS/MS 4 1 2 0.99907 0.96474 7.4872 7 Median 0.95421 0.93569 8.8807 4 0 Median 1.0867 0.95944 NaN 1 0 Median 1.004 1.041 0.62226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47127000 23733000 23394000 18748000 9795500 8952300 3214200 1582700 1631500 25165000 12354000 12811000 0 0 0 0 0 0 0 0 0 17919 472 18676 93458;93459;93460;93461;93462;93463;93464 95107;95108;95109;95110;95111;95112;95113;95114;95115;95116;95117;95118;95119 95117 13 KLVIVGDGACGK ______________________________ IRKKLVIVGDGACGKTCLLIVFSKDQFPEV K K L G K T 1 0 0 1 1 0 0 3 0 1 1 2 0 0 0 0 0 0 0 2 0 0 12 1 1215.6645 P61586;Q5JR08;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q5JR06;E9PN11;U3KQA9;U3KQV3;E9PLA2;C9JRM1 P61586 7 18 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.0054361 45.137 By MS/MS 1 1.3246 1.1709 NaN 1 Median NaN NaN NaN 0 0 Median 1.3246 1.1709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 706890 310660 396220 0 0 0 706890 310660 396220 0 0 0 0 0 0 0 0 0 0 0 0 17920 2559 18677 93465 95120 95120 1 KLVLILNK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE IVQSGQKKLVLILNKSDLVPKENLESWLNY K K L N K S 0 0 1 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 8 1 939.64809 Q9BVP2 Q9BVP2 172 179 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.0077113 75.854 By matching By MS/MS By matching 1 2 2 1.0502 1.1921 22.585 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0502 1.1921 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84252 0.88924 11.031 2 0 Median 1.4902 1.3398 13.274 2 0 Median 22607000 10568000 12039000 0 0 0 0 0 0 2579800 1152300 1427500 0 0 0 9736300 4792800 4943400 10291000 4623300 5667600 17921 3858 18678 93466;93467;93468;93469;93470 95121 95121 1 KLVNTINPGAR LNNLRESLMQFSKPRKLVNTINPGARFMTT SKPRKLVNTINPGARFMTTAMYDAREAIIP R K L A R F 1 1 2 0 0 0 0 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1181.6881 Q92900 Q92900 929 939 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 0.00017535 120.15 By MS/MS By MS/MS By MS/MS 2 2 2 0.8599 0.82637 29.501 3 Median 1.2992 1.3485 NaN 1 0 Median 0.85199 0.7938 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8599 0.82637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15665000 6523700 9140900 2998300 1188700 1809600 10660000 4542300 6118000 0 0 0 2006100 792760 1213300 0 0 0 0 0 0 17922 3564 18679 93471;93472;93473;93474;93475;93476 95122;95123;95124;95125;95126;95127;95128;95129;95130 95126 9 KLVPFATELHER DKLGEVSTYTDDLQKKLVPFATELHERLTK LQKKLVPFATELHERLTKDSEKLKEEIRKE K K L E R L 1 1 0 0 0 0 2 0 1 0 2 1 0 1 1 0 1 0 0 1 0 0 12 1 1438.7932 CON__Q32PJ2;P06727 CON__Q32PJ2 79 90 APOA4 Apolipoprotein A-IV yes no 3 0.0039377 51.875 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2552400 2552400 0 0 0 0 0 0 0 0 0 0 1042700 1042700 0 1509700 1509700 0 0 0 0 + 17923 775 18680 93477;93478 95131;95132 95132 2 KLVPLDYGEDDKNATK NKFEDEDSDDVPRKRKLVPLDYGEDDKNAT LVPLDYGEDDKNATKGTVNTEEKRKHIKSL R K L T K G 1 0 1 3 0 0 1 1 0 0 2 3 0 0 1 0 1 0 1 1 0 0 16 2 1804.9207 P49756 P49756 711 726 RBM25 RNA-binding protein 25 yes yes 3 2.6605E-06 85.576 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.76024 0.87993 12.872 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66942 0.81048 13.636 2 0 Median 0.91457 0.95324 0.57435 2 0 Median 0.77815 0.86753 NaN 1 0 Median 0.65214 0.70858 NaN 1 0 Median 54633000 30499000 24134000 0 0 0 0 0 0 32820000 19472000 13348000 16729000 8216500 8512900 4038800 2200800 1838100 1044800 609920 434860 17924 2397 18681 93479;93480;93481;93482;93483;93484 95133;95134;95135;95136;95137;95138 95137 6 KLVPQLVR TEMCERSPDMLAHFRKLVPQLVRILKNLIM DMLAHFRKLVPQLVRILKNLIMSGYSPEHD R K L V R I 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 8 1 951.62294 O43747 O43747 214 221 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.044009 38.806 By MS/MS By MS/MS By matching 1 1 1 0.93304 0.93234 2.7462 3 Plateau 0.89695 0.91608 NaN 1 0 Median 0.93304 0.93234 NaN 1 0 Median 0.77621 0.88346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6115100 3114300 3000800 1908000 837930 1070100 2449300 1242400 1206900 1757800 1033900 723890 0 0 0 0 0 0 0 0 0 17925 1587 18682 93485;93486;93487 95139;95140 95140 2 KLVQALLEK CWEVYVCSQHSPANRKLVQALLEKHVSSLR HSPANRKLVQALLEKHVSSLRAHETWGDSI R K L E K H 1 0 0 0 0 1 1 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 9 1 1040.6594 Q9NU22 Q9NU22 2406 2414 MDN1 Midasin yes yes 2 0.00040865 138.4 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1905 1.2379 11.55 4 Median 0.98237 1.0633 NaN 1 0 Median 1.3326 1.2723 NaN 1 0 Median 1.0635 1.2044 NaN 1 0 Median 1.3805 1.4025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38058000 16328000 21730000 2863900 1124100 1739800 11374000 4268900 7104700 19116000 9205500 9910700 4704600 1729700 2974900 0 0 0 0 0 0 17926 4112 18683 93488;93489;93490;93491 95141;95142;95143 95142 3 KLVQNGPEVHPGANFIQQR TFPEKVNKANINFLRKLVQNGPEVHPGANF NGPEVHPGANFIQQRHTQMKRFLKYGNREK R K L Q R H 1 1 2 0 0 3 1 2 1 1 1 1 0 1 2 0 0 0 0 2 0 0 19 1 2131.1287 O14802;R4GMX2 O14802 406 424 POLR3A DNA-directed RNA polymerase III subunit RPC1;DNA-directed RNA polymerase yes no 3 0.063979 14.928 By MS/MS 1 0.93598 0.95382 NaN 1 Median 0.93598 0.95382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2471200 1424300 1046900 2471200 1424300 1046900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17927 1496 18684 93492 95144 95144 0 KLVQTYSVFPNQDEMSDVVVQPYNSLLTLK LGSYLLERLNDRYPKKLVQTYSVFPNQDEM SDVVVQPYNSLLTLKRLTQNADCVVVLDNT K K L L K R 0 0 2 2 0 3 1 0 0 0 4 2 1 1 2 3 2 0 2 5 0 0 30 1 3454.7694 P23258;K7EIS0 P23258 164 193 TUBG1 Tubulin gamma-1 chain;Tubulin gamma chain yes no 3 0.040523 9.7116 By MS/MS 1 0.82763 0.87047 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82763 0.87047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3489000 1894300 1594700 0 0 0 0 0 0 3489000 1894300 1594700 0 0 0 0 0 0 0 0 0 17928 2108 18685 93493 95145 95145 1 KLVSIVADQLEK LQIVCDWTDYDERMKKLVSIVADQLEKNRL RMKKLVSIVADQLEKNRLPSVHPHHSMLYP K K L E K N 1 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 0 0 2 0 0 12 1 1341.7868 O15294 O15294 488 499 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.0087565 39.148 By matching By matching By matching By MS/MS 1 1 2 1 1.0183 1.0031 12.357 5 Median 0.94839 1.0031 NaN 1 0 Median 1.0183 0.9615 NaN 1 0 Median 0.97083 1.1102 21.02 2 0 Median 1.1349 1.081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10189000 4473100 5716100 2070400 969890 1100500 644260 295800 348460 6476800 2726500 3750300 997670 480930 516740 0 0 0 0 0 0 17929 1537 18686 93494;93495;93496;93497;93498 95146 95146 1 KLVSIVHGCR LGQVKLTLWYYSEERKLVSIVHGCRSLRQN YSEERKLVSIVHGCRSLRQNGRDPPDPYVS R K L C R S 0 1 0 0 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1167.6546 Q9BSJ8 Q9BSJ8 987 996 ESYT1 Extended synaptotagmin-1 yes yes 2 0.00051514 87.308 By MS/MS 1 1.19 1.1215 NaN 1 Median NaN NaN NaN 0 0 Median 1.19 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3301600 1436700 1864900 0 0 0 3301600 1436700 1864900 0 0 0 0 0 0 0 0 0 0 0 0 17930 3816 18687 93499 95147 95147 1 KLVTDQNISENWR LGNICRSPIAEAVFRKLVTDQNISENWRVD FRKLVTDQNISENWRVDSAATSGYEIGNPP R K L W R V 0 1 2 1 0 1 1 0 0 1 1 1 0 0 0 1 1 1 0 1 0 0 13 1 1601.8162 P24666;G5E9R5;F2Z2Q9 P24666 29 41 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2;3 3.9239E-53 231.05 By MS/MS By MS/MS By matching By matching 3 2 3 1 1.17 1.0357 28.269 9 Median 1.1864 1.1606 27.573 3 0 Median 1.234 1.0891 9.4456 2 0 Median 0.8717 0.88678 13.579 3 0 Plateau 1.17 1.0357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147980000 66012000 81965000 115550000 50157000 65397000 19231000 8595700 10635000 11603000 6475000 5127600 1589700 784410 805330 0 0 0 0 0 0 17931 2125 18688 93500;93501;93502;93503;93504;93505;93506;93507;93508 95148;95149;95150;95151;95152 95149 5 KLVWIPSER AVIYNPATQADWTAKKLVWIPSERHGFEAA ADWTAKKLVWIPSERHGFEAASIKEERGDE K K L E R H 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 0 0 9 1 1126.6499 P35580;E7ERA5 P35580 34 42 MYH10 Myosin-10 yes no 2 0.0039604 69.598 By MS/MS 1 0.48022 0.57562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48022 0.57562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11899000 7855400 4043400 0 0 0 0 0 0 11899000 7855400 4043400 0 0 0 0 0 0 0 0 0 17932 2245 18689 93509 95153 95153 1 KLVWVPSDK NFINNPLAQADWAAKKLVWVPSDKSGFEPA ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K K L D K S 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 1 0 1 0 2 0 0 9 1 1070.6124 P35579;Q5BKV1;B1AH99 P35579 30 38 MYH9 Myosin-9 yes no 2 0.0019457 82.287 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 2 1.0098 0.99618 16.243 9 Median 1.0616 1.0624 8.2964 2 0 Median 1.0319 0.97091 7.7666 2 0 Median 0.86006 0.99618 NaN 1 0 Median 1.0098 0.94707 NaN 1 0 Median 0.95923 1.0333 NaN 1 0 Median 0.86251 0.7692 27.171 2 0 Median 144320000 72201000 72116000 58529000 28147000 30382000 54501000 27397000 27104000 13591000 7590000 6001300 2148700 1092200 1056500 8660000 4379700 4280300 6887200 3595100 3292000 17933 2244 18690 93510;93511;93512;93513;93514;93515;93516;93517;93518 95154;95155;95156;95157;95158;95159;95160;95161;95162;95163;95164 95155 11 KLYANMFER AVCQQRIRRQLAREKKLYANMFERLAEEEN QLAREKKLYANMFERLAEEENKAKAEASSG K K L E R L 1 1 1 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 9 1 1170.5856 Q02790;H0YFG2 Q02790 409 417 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 0.002307 79.474 By MS/MS By MS/MS By matching 1 1 1 1.488 1.3567 27.627 3 Median 1.2465 1.24 NaN 1 0 Median 1.488 1.3567 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2162 2.0797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50072000 19647000 30425000 27846000 10883000 16963000 20701000 8285700 12415000 0 0 0 1525900 478910 1047000 0 0 0 0 0 0 17934 2701 18691 93519;93520;93521 95165;95166;95167 95165 3 KLYDIDVAK VDVKANKHQIKQAVKKLYDIDVAKVNTLIR IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K K L A K V 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1063.5914 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 117 125 RPL23A 60S ribosomal protein L23a yes no 2 0.00039432 135.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 3 1.1758 1.0838 7.2088 11 Median 1.0867 1.1002 NaN 1 0 Median 1.1758 1.0311 3.1465 3 0 Median 1.0285 1.0205 NaN 1 0 Median 1.202 1.0838 NaN 1 1 Median 1.0359 1.1499 2.1494 2 0 Median 1.2591 1.1082 10.457 3 0 Median 300380000 139360000 161030000 143190000 66207000 76985000 41253000 19162000 22092000 47857000 22568000 25289000 17127000 7429600 9696900 32294000 15446000 16848000 18657000 8542900 10114000 17935 544 18692 93522;93523;93524;93525;93526;93527;93528;93529;93530;93531;93532;93533 95168;95169;95170;95171;95172;95173;95174;95175;95176;95177;95178;95179;95180;95181;95182;95183;95184;95185 95180 18 KLYELIITR EMRMAIESAGFKLNKKLYELIITRYSEPDL GFKLNKKLYELIITRYSEPDLAVDFDNFVC K K L T R Y 0 1 0 0 0 0 1 0 0 2 2 1 0 0 0 0 1 0 1 0 0 0 9 1 1147.6965 P07384 P07384 654 662 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0046467 66.27 By MS/MS By matching By matching 1 1 1 1.2233 1.2564 23.578 3 Median 1.2233 1.2564 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79214 0.84123 NaN 1 0 Median 1.3384 1.2742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15508000 6801200 8706900 11199000 4750500 6448700 0 0 0 2958000 1490400 1467600 1350900 560360 790570 0 0 0 0 0 0 17936 1886 18693 93534;93535;93536 95186;95187 95186 2 KLYGAQFHPEVGLTENGK ARSGNIVAGIANESKKLYGAQFHPEVGLTE GAQFHPEVGLTENGKVILKNFLYDIAGCSG K K L G K V 1 0 1 0 0 1 2 3 1 0 2 2 0 1 1 0 1 0 1 1 0 0 18 1 1987.0163 P49915 P49915 183 200 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 1.3227E-06 72.446 By MS/MS By matching 1 1 1.1014 1.0811 3.615 2 Median 1.025 1.0538 NaN 1 0 Median 1.1834 1.1091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12912000 7072700 5838900 10097000 5306900 4789600 2815100 1765800 1049300 0 0 0 0 0 0 0 0 0 0 0 0 17937 2405 18694 93537;93538 95188;95189 95188 2 KLYKPEVQLR GVPAAPVLPFGLTPKKLYKPEVQLRRPNWS GLTPKKLYKPEVQLRRPNWSKLVAEDLSQD K K L L R R 0 1 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 0 1 1 0 0 10 2 1272.7554 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 771 780 DIAPH1 Protein diaphanous homolog 1 yes no 2;3 0.00049687 64.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1 1.0944 1.1461 40.825 9 Median 1.0661 1.127 20.369 2 0 Median 1.0744 1.089 1.8263 3 0 Median 1.0944 1.247 NaN 1 0 Median 1.024 1.1461 NaN 1 0 Median 3.2063 3.7694 NaN 1 0 Median 1.2108 1.2422 NaN 1 0 Median 46415000 21002000 25413000 16480000 8527900 7952000 15258000 6445300 8812900 5069300 2397200 2672100 3532100 1733900 1798200 3760100 849820 2910200 2315200 1047900 1267200 17938 274 18695 93539;93540;93541;93542;93543;93544;93545;93546;93547 95190;95191;95192;95193;95194;95195;95196;95197;95198;95199;95200;95201;95202;95203 95198 14 KLYNWLR LLAEAKEYVIKACSRKLYNWLRVAPYRPDQ YVIKACSRKLYNWLRVAPYRPDQQVEEDDD R K L L R V 0 1 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 0 7 1 991.56034 Q7KZ85 Q7KZ85 748 754 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.02651 64.866 By MS/MS 1 1.2706 1.5234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2706 1.5234 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4887800 2029500 2858300 0 0 0 0 0 0 4887800 2029500 2858300 0 0 0 0 0 0 0 0 0 17939 3213 18696 93548 95204 95204 1 KLYYQQLK TLRDLLQFFKPRQPKKLYYQQLKMKITDFE FKPRQPKKLYYQQLKMKITDFENRRSFKCI K K L L K M 0 0 0 0 0 2 0 0 0 0 2 2 0 0 0 0 0 0 2 0 0 0 8 1 1082.6124 Q93009;H3BND8 Q93009 875 882 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0082267 73.975 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2435 1.2115 16.372 4 Median 1.5279 1.6124 NaN 1 0 Median 1.1964 1.1087 NaN 1 1 Median 1.0318 1.192 NaN 1 0 Median 1.2926 1.2313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27186000 13309000 13878000 3024200 1285400 1738800 11582000 5943100 5638900 9817800 4861300 4956500 2762400 1218700 1543700 0 0 0 0 0 0 17940 3574 18697 93549;93550;93551;93552 95205;95206;95207;95208;95209 95206 5 KMAQELYMEQK VERRRTMMEDFRKYRKMAQELYMEQKNERL RKYRKMAQELYMEQKNERLELRGGVDTDEL R K M Q K N 1 0 0 0 0 2 2 0 0 0 1 2 2 0 0 0 0 0 1 0 0 0 11 1 1397.6683 P55884 P55884 762 772 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.006041 62.463 By MS/MS 1 0.90159 0.83857 NaN 1 Median NaN NaN NaN 0 0 Median 0.90159 0.83857 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5887800 3097000 2790800 0 0 0 5887800 3097000 2790800 0 0 0 0 0 0 0 0 0 0 0 0 17941 2504 18698 93553 95210 95210 1 KMCLFAGFQR FILDQTNVSAAAQRRKMCLFAGFQRKAVVV AAQRRKMCLFAGFQRKAVVVCPKDEDYKQR R K M Q R K 1 1 0 0 1 1 0 1 0 0 1 1 1 2 0 0 0 0 0 0 0 0 10 1 1256.6158 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 592 601 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 0.0011014 52.579 By matching By MS/MS 1 2 1.2698 1.3853 15.289 3 Median NaN NaN NaN 0 0 Median 1.2698 1.2254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3784 1.5167 12.815 2 1 Median NaN NaN NaN 0 0 Median 9465200 4156500 5308600 0 0 0 395890 146800 249080 0 0 0 0 0 0 9069300 4009700 5059500 0 0 0 17942 2680 18699 93554;93555;93556 95211;95212;95213 95212 3 KMEDSVGCLETAEEVKR KQIATLHAQVADMKKKMEDSVGCLETAEEV EDSVGCLETAEEVKRKLQKDLEGLSQRHEE K K M K R K 1 1 0 1 1 0 4 1 0 0 1 2 1 0 0 1 1 0 0 2 0 0 17 2 1979.9292 P35579 P35579 1372 1388 MYH9 Myosin-9 yes yes 3 5.6304E-11 103.87 By MS/MS 1 1.0465 1.1924 NaN 1 Median NaN NaN NaN 0 0 Median 1.0465 1.1924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9069000 4341200 4727800 0 0 0 9069000 4341200 4727800 0 0 0 0 0 0 0 0 0 0 0 0 17943 2244 18700 93557 95214 95214 1 KMEEDIYTNLSK ETEAERYLENYKCYRKMEEDIYTNLSKMET CYRKMEEDIYTNLSKMETVLGQSMSSLPLS R K M S K M 0 0 1 1 0 0 2 0 0 1 1 2 1 0 0 1 1 0 1 0 0 0 12 1 1469.7072 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3366 3377 SYNE2 Nesprin-2 yes no 3 0.050246 20.009 By MS/MS By MS/MS 1 1 0.99424 1.0682 22.859 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79985 0.90876 NaN 1 0 Median 1.2359 1.2556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4322200 2584200 1738000 0 0 0 0 0 0 3731900 2325500 1406400 590300 258680 331620 0 0 0 0 0 0 17944 3521 18701 93558;93559 95215;95216 95216 0 KMEEEILLLEDQNSK QKLQLEKVTAEAKIKKMEEEILLLEDQNSK KMEEEILLLEDQNSKFIKEKKLMEDRIAEC K K M S K F 0 0 1 1 0 1 4 0 0 1 3 2 1 0 0 1 0 0 0 0 0 0 15 1 1817.9081 P35580 P35580 982 996 MYH10 Myosin-10 yes yes 3 2.5687E-10 106.42 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0176 1.0736 10.777 4 Median 1.1335 1.0929 NaN 1 0 Median 1.2791 1.2368 NaN 1 0 Median 0.91363 1.0547 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90184 0.95259 NaN 1 0 Median NaN NaN NaN 0 0 Median 21911000 10624000 11287000 11729000 5555600 6173800 3111400 1348000 1763400 5102300 2700500 2401800 0 0 0 1968000 1020000 947980 0 0 0 17945 2245 18702 93560;93561;93562;93563 95217;95218;95219;95220;95221 95217 5 KMEEVKEANIR SLCISTKKEVEKMNKKMEEVKEANIRVVSE KMNKKMEEVKEANIRVVSEDFLQDVSASTK K K M I R V 1 1 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 0 1 0 0 11 2 1345.7024 P09874 P09874 442 452 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.0013187 53.683 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 0.98667 1.1243 23.985 9 Median 0.89384 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96437 0.97276 9.4465 3 0 Plateau NaN NaN NaN 0 0 Median 1.0823 1.2754 8.4745 3 0 Median 0.86746 0.84801 46.569 2 0 Median 26416000 12974000 13442000 1531900 832360 699510 0 0 0 17019000 8206200 8812600 0 0 0 5898400 2975200 2923200 1966600 959960 1006600 17946 1922 18703 93564;93565;93566;93567;93568;93569;93570;93571;93572 95222;95223;95224;95225;95226;95227;95228;95229;95230;95231;95232;95233 95231 12 KMEGHYVHAGNIIATQR KNLGGKSSGRRQGIKKMEGHYVHAGNIIAT EGHYVHAGNIIATQRHFRWHPGAHVCVLQV K K M Q R H 2 1 1 0 0 1 1 2 2 2 0 1 1 0 0 0 1 0 1 1 0 0 17 1 1923.9737 H7C5U8;Q9P0M9;D6RE11;B3KN43 H7C5U8 38 54 MRPL27 39S ribosomal protein L27, mitochondrial yes no 3;4 2.4919E-05 49.463 By MS/MS 2 1.9699 1.7392 34.449 2 Median NaN NaN NaN 0 0 Median 1.9699 1.7392 34.449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6799800 2245000 4554700 0 0 0 6799800 2245000 4554700 0 0 0 0 0 0 0 0 0 0 0 0 17947 1267 18704 93573;93574 95234;95235 95235 2 KMEIYRPHK IRMTHNLLLNYGLYRKMEIYRPHKANAEEM NYGLYRKMEIYRPHKANAEEMTKYHSDDYI R K M H K A 0 1 0 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 1 0 0 0 9 2 1200.6437 Q13547;Q5TEE2;Q92769;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 Q13547 50 58 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 3 0.0088172 37.191 By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 1 1.0114 1.105 18.325 7 Median 0.93638 1.0137 NaN 1 0 Median 1.1289 1.0739 NaN 1 0 Median 0.91682 1.0801 4.4506 2 0 Median NaN NaN NaN 0 0 Median 1.2223 1.4174 28.717 2 0 Median 1.2205 1.105 NaN 1 0 Median 10963000 4891100 6072300 1586600 790580 795980 3808000 1362900 2445100 2876400 1522800 1353700 0 0 0 2556300 1150200 1406100 136070 64657 71417 17948 2823;3555 18705 93575;93576;93577;93578;93579;93580;93581 95236;95237 95236 1 KMEKEELDVSVR EDADMELTSRDEGERKMEKEELDVSVREEE GERKMEKEELDVSVREEEVSCSGPLSQKQA R K M V R E 0 1 0 1 0 0 3 0 0 0 1 2 1 0 0 1 0 0 0 2 0 0 12 2 1461.7497 F5H0F9;Q9UJX4;F5GY68 F5H0F9 186 197 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 0.0013995 43.991 By matching By matching By MS/MS 1 1 1 1.0495 0.96333 25.269 3 Median NaN NaN NaN 0 0 Median 1.0581 0.96333 NaN 1 0 Median 0.6005 0.68484 NaN 1 0 Median 1.0495 1.1217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259300 1587400 1671900 0 0 0 505720 166410 339310 1417900 779230 638700 1335700 641760 693900 0 0 0 0 0 0 17949 1019 18706 93582;93583;93584 95238;95239 95239 2 KMEMEMEQVFEMK AQMEEERREHVAKMKKMEMEMEQVFEMKVK MKKMEMEMEQVFEMKVKEKVQKLKDSEAEL K K M M K V 0 0 0 0 0 1 4 0 0 0 0 2 4 1 0 0 0 0 0 1 0 0 13 1 1688.7282 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 332 344 SEPT7;DKFZp586I031 Septin-7 yes no 3 0.00043377 50.088 By MS/MS By matching 2 1 1.0416 1.0932 12.692 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0268 1.0759 2.259 2 0 Median 1.4087 1.338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15023000 7171200 7851500 0 0 0 0 0 0 14401000 6914400 7486400 621880 256780 365090 0 0 0 0 0 0 17950 870 18707;18708 93585;93586;93587 95240;95241;95242 95242 313;314;315;316 3 KMGDHLTNLHR FLETHFLDEEVKLIKKMGDHLTNLHRLGGP KLIKKMGDHLTNLHRLGGPEAGLGEYLFER K K M H R L 0 1 1 1 0 0 0 1 2 0 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1320.6721 P02792 P02792 144 154 FTL Ferritin light chain yes yes 2;3 0.00053947 54.471 By MS/MS 2 0.53175 0.46897 0.084018 2 Median NaN NaN NaN 0 0 Median 0.53175 0.46897 0.084018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2521700 1638300 883410 0 0 0 2521700 1638300 883410 0 0 0 0 0 0 0 0 0 0 0 0 17951 1837 18709 93588;93589 95243;95244 95243 2 KMGVNLTR ASSPEMNLPTVSALRKMGVNLTRSNKETVK PTVSALRKMGVNLTRSNKETVKHSDVLFLA R K M T R S 0 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 8 1 917.51167 Q96C36;A0A087WTV6;J3KR12;A0A087WX69;A0A087WZF0 Q96C36 47 54 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 2 0.037194 42.109 By MS/MS 1 1.4025 1.3235 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4025 1.3235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1408400 472140 936230 0 0 0 0 0 0 0 0 0 1408400 472140 936230 0 0 0 0 0 0 17952 3615 18710 93590 95245 95245 1 KMLQHYLQNK LGYLCQACTSLLHSRKMLQHYLQNKNGDGL LLHSRKMLQHYLQNKNGDGLPSAVAQRVQR R K M N K N 0 0 1 0 0 2 0 0 1 0 2 2 1 0 0 0 0 0 1 0 0 0 10 1 1301.6914 Q5SRE5 Q5SRE5 1496 1505 NUP188 Nucleoporin NUP188 homolog yes yes 3 0.0044821 37.556 By MS/MS 1 1.0748 1.232 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0748 1.232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1921400 982740 938640 0 0 0 0 0 0 1921400 982740 938640 0 0 0 0 0 0 0 0 0 17953 3074 18711 93591 95246 95246 1 KMMADEALGSGLVSR IGNQSLVNELAFTARKMMADEALGSGLVSR KMMADEALGSGLVSRVFPDKEVMLDAALAL R K M S R V 2 1 0 1 0 0 1 2 0 0 2 1 2 0 0 2 0 0 0 1 0 0 15 1 1563.7749 Q13011 Q13011 231 245 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 2;3 1.0462E-07 88.561 By MS/MS By matching By matching By MS/MS 3 2 1 2 1.0853 1.1139 46.022 8 Median 1.2939 1.302 13.136 3 2 Plateau 0.7591 0.72118 45.915 2 0 Median 1.0728 1.1688 NaN 1 0 Median 1.9893 1.8773 56.504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74752000 36414000 38338000 63112000 30290000 32822000 5718200 3663900 2054300 3393300 1481500 1911800 2529200 978880 1550300 0 0 0 0 0 0 17954 2778 18712 93592;93593;93594;93595;93596;93597;93598;93599 95247;95248;95249;95250;95251 95249 5 KMMEIMTR KTSYAQHQQVRQIRKKMMEIMTREVQTNDL QVRQIRKKMMEIMTREVQTNDLKEVVNKLI K K M T R E 0 1 0 0 0 0 1 0 0 1 0 1 3 0 0 0 1 0 0 0 0 0 8 1 1038.5024 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6 P61247 167 174 RPS3A 40S ribosomal protein S3a yes no 2 0.0063131 81.548 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1.2065 1.1702 43.341 6 Median 0.70693 0.71444 56.074 2 0 Median 1.2878 1.1471 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.8259 1.7231 NaN 1 0 Median 1.1303 1.1939 NaN 1 0 Median 1.5163 1.3551 NaN 1 0 Median 36755000 16664000 20091000 17634000 8714300 8919200 10260000 4390000 5869900 0 0 0 2081400 686090 1395400 2870700 1413000 1457700 3909400 1460600 2448800 17955 2553 18713 93600;93601;93602;93603;93604;93605 95252;95253;95254;95255 95254 4 KMNALFEGR RMCPATQKLIEESQRKMNALFEGRRIEFAE IEESQRKMNALFEGRRIEFAEQINKMEARP R K M G R R 1 1 1 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 9 1 1064.5437 Q9H307 Q9H307 262 270 PNN Pinin yes yes 2 0.0022531 85.676 By MS/MS By MS/MS 3 1 1.5052 1.4678 19.204 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3701 1.5075 21.899 3 2 Median 1.6535 1.4292 NaN 1 0 Median 50323000 20935000 29388000 0 0 0 0 0 0 0 0 0 0 0 0 45690000 19296000 26394000 4632400 1638800 2993700 17956 3950 18714 93606;93607;93608;93609 95256;95257;95258;95259 95257 4 KMNLGVGAYR ILGVTEAFKRDTNSKKMNLGVGAYRDDNGK DTNSKKMNLGVGAYRDDNGKPYVLPSVRKA K K M Y R D 1 1 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 1 1 0 0 10 1 1107.5859 P00505 P00505 59 68 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.00059674 89.55 By MS/MS By MS/MS By MS/MS 2 1 1 1.0693 1.2139 10.348 3 Median 1.048 1.1228 NaN 1 0 Median 1.4631 1.3783 NaN 1 0 Median 1.0693 1.2139 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17163000 6417500 10746000 5830100 1883000 3947100 8069200 3208000 4861200 3263800 1326500 1937300 0 0 0 0 0 0 0 0 0 17957 1823 18715 93610;93611;93612;93613 95260;95261;95262;95263 95263 4 KMNVSPDVNYEELAR PNEEARARIMQIHSRKMNVSPDVNYEELAR KMNVSPDVNYEELARCTDDFNGAQCKAVCV R K M A R C 1 1 2 1 0 0 2 0 0 0 1 1 1 0 1 1 0 0 1 2 0 0 15 1 1763.8512 R4GNH3;P17980;E9PM69 R4GNH3 356 370 PSMC3 26S protease regulatory subunit 6A yes no 3 5.3025E-05 73.022 By MS/MS 1 1.1294 1.1249 NaN 1 Median 1.1294 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16150000 8343100 7807100 16150000 8343100 7807100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17958 2050 18716 93614 95264;95265 95264 2 KMPFTEK PGFQLVFLPFADDKRKMPFTEKIMATPEQV LPFADDKRKMPFTEKIMATPEQVGKMKAIV R K M E K I 0 0 0 0 0 0 1 0 0 0 0 2 1 1 1 0 1 0 0 0 0 0 7 1 879.45242 P12956;B1AHC9 P12956 445 451 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.015574 81.119 By MS/MS 1 1.1111 1.0371 NaN 1 Median NaN NaN NaN 0 0 Median 1.1111 1.0371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11632000 5610000 6022400 0 0 0 11632000 5610000 6022400 0 0 0 0 0 0 0 0 0 0 0 0 17959 1985 18717 93615 95266;95267 95266 2 KMQAGEEVTELRR QMQKELLDTELDLYKKMQAGEEVTELRRKY YKKMQAGEEVTELRRKYTELQLEAAKRGIL K K M R R K 1 2 0 0 0 1 3 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 13 2 1545.7933 Q5T8P6 Q5T8P6 824 836 RBM26 RNA-binding protein 26 no no 3 0.064022 13.679 By MS/MS 1 0.77229 0.87063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77229 0.87063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1723600 843850 879750 0 0 0 0 0 0 1723600 843850 879750 0 0 0 0 0 0 0 0 0 17960 3097 18718 93616 95268 95268 1 KMQAHIQDLEEQLDEEEGAR EEEEERNQILQNEKKKMQAHIQDLEEQLDE IQDLEEQLDEEEGARQKLQLEKVTAEAKIK K K M A R Q 2 1 0 2 0 3 5 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 20 1 2368.0965 P35580 P35580 947 966 MYH10 Myosin-10 yes yes 3 6.6638E-09 74.953 By MS/MS By matching 1 1 0.60987 0.59903 22.563 2 Median 0.69792 0.70265 NaN 1 0 Median 0.53292 0.51069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9055900 4736200 4319700 7880500 4071800 3808600 1175400 664310 511060 0 0 0 0 0 0 0 0 0 0 0 0 17961 2245 18719 93617;93618 95269 95269 1 KMQELLQTQDFSK EREHQISPGDFPSLRKMQELLQTQDFSKFQ LRKMQELLQTQDFSKFQALKPKLLDTVDDM R K M S K F 0 0 0 1 0 3 1 0 0 0 2 2 1 1 0 1 1 0 0 0 0 0 13 1 1594.8025 A0A024R571;Q9H4M9;C9J2Z4 A0A024R571 372 384 EHD1 EH domain-containing protein 1 yes no 2 5.5646E-05 90.653 By MS/MS 1 1.2786 1.2076 NaN 1 Median 1.2786 1.2076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4929600 2174800 2754800 4929600 2174800 2754800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17962 5 18720 93619 95270 95270 1 KMQGLMFR AVESMVKSLERENIRKMQGLMFRCSASCCE LERENIRKMQGLMFRCSASCCEDSQASMKQ R K M F R C 0 1 0 0 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 0 0 0 8 1 1009.5201 Q96C01 Q96C01 27 34 FAM136A Protein FAM136A yes yes 2 0.02061 58.981 By MS/MS By MS/MS By matching 1 1 1 0.85271 0.84612 20.397 3 Median 0.85271 0.84612 NaN 1 0 Median 1.1145 0.98395 NaN 1 1 Median 0.62879 0.65714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9297200 4981600 4315600 4100000 2009100 2090800 3454900 1919800 1535100 1742300 1052700 689620 0 0 0 0 0 0 0 0 0 17963 3612 18721 93620;93621;93622 95271;95272 95271 2 KMQQENMKPQEQLTLEPYER DSTASAEAVFASEVKKMQQENMKPQEQLTL NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K K M E R D 0 1 1 0 0 4 4 0 0 0 2 2 2 0 2 0 1 0 1 0 0 0 20 2 2519.2148 P22087;M0QXL5;M0R299 P22087 285 304 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3;4 4.1212E-18 99.059 By MS/MS 2 0.67932 0.76932 8.3722 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67932 0.76932 8.3722 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27674000 16568000 11106000 0 0 0 0 0 0 27674000 16568000 11106000 0 0 0 0 0 0 0 0 0 17964 2097 18722 93623;93624 95273;95274 95274 2 KMQQNIQELEEQLEEEESAR EEEEERCQHLQAEKKKMQQNIQELEEQLEE IQELEEQLEEEESARQKLQLEKVTTEAKLK K K M A R Q 1 1 1 0 0 4 7 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 20 1 2460.1438 P35579 P35579 940 959 MYH9 Myosin-9 yes yes 2;3 7.2108E-20 124.18 By MS/MS 2 1.1276 1.1442 6.9175 2 Median 1.1276 1.1442 6.9175 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10426000 4402900 6023000 10426000 4402900 6023000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17965 2244 18723 93625;93626 95275;95276;95277 95276 3 KMQSTLISAAR PNLSELREIMNDLEKKMQSTLISAARDLGL DLEKKMQSTLISAARDLGLDPGKQIKLDSS K K M A R D 2 1 0 0 0 1 0 0 0 1 1 1 1 0 0 2 1 0 0 0 0 0 11 1 1204.6598 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 491 501 MSH2 DNA mismatch repair protein Msh2 yes no 2;3 0.00010418 100.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1.1336 1.1301 19.723 8 Median 0.89042 0.92319 29.62 2 0 Median 1.2446 1.1606 NaN 1 0 Median 0.86905 0.9882 17.665 2 0 Median 1.1944 1.1479 13.339 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26447000 11940000 14507000 4145600 2180000 1965600 7924100 3580200 4343900 4622600 2450500 2172100 9754700 3729600 6025100 0 0 0 0 0 0 17966 2324 18724 93627;93628;93629;93630;93631;93632;93633;93634 95278;95279;95280;95281;95282;95283;95284;95285;95286;95287;95288 95285 11 KMRPFEGFQR YILDQTNVYGSAQRRKMRPFEGFQRKAIVI SAQRRKMRPFEGFQRKAIVICPTDEDLKDR R K M Q R K 0 2 0 0 0 1 1 1 0 0 0 1 1 2 1 0 0 0 0 0 0 0 10 2 1294.6605 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1 Q9BUJ2 517 526 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.00023459 105.2 By matching By MS/MS By MS/MS 2 1 1 1.0533 0.98411 25.905 4 Median 1.1804 1.1845 18.273 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61702 0.7218 NaN 1 0 Median 1.0734 0.9304 NaN 1 0 Median 11517000 6369100 5147800 1923100 1063600 859590 0 0 0 0 0 0 0 0 0 8087100 4747700 3339400 1506700 557860 948820 17967 3840 18725 93635;93636;93637;93638 95289;95290 95289 2 KMTEEFDEDSGDYPLTMAGPQWK TAEMFRHMQNSEIIRKMTEEFDEDSGDYPL DSGDYPLTMAGPQWKKFKSSFCEFIGVLVR R K M W K K 1 0 0 3 0 1 3 2 0 0 1 2 2 1 2 1 2 1 1 0 0 0 23 1 2674.1567 Q8N3U4;B1AMT4;B1AMT2;B1AMT3 Q8N3U4 147 169 STAG2 Cohesin subunit SA-2 yes no 3 0.052908 7.1117 By MS/MS 1 0.66518 0.761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66518 0.761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1782700 1054500 728210 0 0 0 0 0 0 1782700 1054500 728210 0 0 0 0 0 0 0 0 0 17968 3369 18726 93639 95291 95291 1 KMTEIQTPENTPR VATFIGLDKMAVWAKKMTEIQTPENTPRLF AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K K M P R L 0 1 1 0 0 1 2 0 0 1 0 1 1 0 2 0 3 0 0 0 0 0 13 1 1543.7664 Q9NTJ3;E9PD53 Q9NTJ3 680 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0010287 41.092 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.76278 0.76697 74.41 4 Median 0.44713 0.45332 NaN 1 0 Median 2.6346 2.2978 NaN 1 0 Median 0.46889 0.53398 NaN 1 0 Median 1.2409 1.1016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19711000 7780700 11931000 3439300 2469500 969810 13043000 3479400 9563300 2119800 1280800 838940 1109600 551020 558590 0 0 0 0 0 0 17969 4108 18727 93640;93641;93642;93643 95292;95293 95292 2 KMTPSYEIR MGDVKNFLYAWCGKRKMTPSYEIRAVGNKN AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ R K M I R A 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 0 0 0 9 1 1123.5696 Q08211 Q08211 16 24 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0010775 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 0.98962 0.89307 58.289 7 Median NaN NaN NaN 0 0 Median 1.3052 1.2118 NaN 1 0 Median 0.32173 0.365 NaN 1 1 Median 0.33713 0.32399 NaN 1 1 Median 1.0564 1.1983 20.587 3 1 Median 0.98962 0.8629 NaN 1 1 Median 62801000 42512000 20289000 0 0 0 11324000 4706600 6617000 31987000 26647000 5340100 4511500 3678000 833450 13420000 6656000 6763500 1559200 824360 734850 17970 2736 18728 93644;93645;93646;93647;93648;93649;93650 95294;95295;95296;95297;95298;95299;95300;95301 95295 8 KMTQNDSQLQPIQYQYQDNIK VELNKALALKEALARKMTQNDSQLQPIQYQ SQLQPIQYQYQDNIKELELEVINLQKEKEE R K M I K E 0 0 2 2 0 6 0 0 0 2 1 2 1 0 1 1 1 0 2 0 0 0 21 1 2582.2435 O95239 O95239 542 562 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 1.6491E-06 40.012 By MS/MS By MS/MS 1 2 0.61601 0.71153 34.503 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61601 0.71153 NaN 1 0 Median 0.66007 0.62248 47.557 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13370000 8542800 4827200 0 0 0 0 0 0 9635100 6703100 2932000 3734900 1839700 1895200 0 0 0 0 0 0 17971 1757 18729 93651;93652;93653 95302;95303;95304;95305;95306 95306 5 KMVDPEKPQLGMIDR GCMEKIEKGQVRLSKKMVDPEKPQLGMIDR KMVDPEKPQLGMIDRWYHPGCFVKNREELG K K M D R W 0 1 0 2 0 1 1 1 0 1 1 2 2 0 2 0 0 0 0 1 0 0 15 2 1755.9012 P09874 P09874 142 156 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 2.0054E-10 111.43 By matching By MS/MS By MS/MS 1 10 6 0.6916 0.80641 14.321 17 Median 0.61401 0.69791 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65198 0.78905 10.073 10 0 Median 0.83877 0.95593 9.1125 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 284340000 158090000 126250000 4043700 2608000 1435700 0 0 0 206950000 117900000 89046000 73347000 37581000 35766000 0 0 0 0 0 0 17972 1922 18730;18731 93654;93655;93656;93657;93658;93659;93660;93661;93662;93663;93664;93665;93666;93667;93668;93669;93670 95307;95308;95309;95310;95311;95312;95313;95314;95315;95316;95317;95318;95319;95320;95321;95322;95323;95324;95325;95326;95327;95328;95329;95330 95319 702;703 24 KMVGDVTGAQAYASTAK XGFIAFAYSVKSRDRKMVGDVTGAQAYAST VGDVTGAQAYASTAKCLNIWALILGILMTI R K M A K C 4 0 0 1 0 1 0 2 0 0 0 2 1 0 0 1 2 0 1 2 0 0 17 1 1696.8454 H7BYV1;E9PS44;E9PQN9;P13164;Q01629;Q01628 H7BYV1 16 32 IFITM2;IFITM3;IFITM1 Interferon-induced transmembrane protein 1;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 3 yes no 3 3.4402E-11 104.88 By MS/MS By MS/MS 1 2 1.459 1.2648 26.955 3 Median 1.6114 1.5091 NaN 1 0 Median 1.3513 1.0602 24.948 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19380000 8462000 10918000 5331400 2304400 3026900 14049000 6157600 7891200 0 0 0 0 0 0 0 0 0 0 0 0 17973 981 18732 93671;93672;93673 95331;95332;95333;95334;95335 95334 5 KMVNDAEPDTKK QSSNSESKKKKKKKRKMVNDAEPDTKKAKT KKRKMVNDAEPDTKKAKTENKGKSEEESAE R K M K K A 1 0 1 2 0 0 1 0 0 0 0 3 1 0 1 0 1 0 0 1 0 0 12 2 1374.6813 Q9NVP1 Q9NVP1 116 127 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 0.062 14.687 By MS/MS By matching 1 2 0.93962 1.0863 10.935 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93962 1.0863 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92631 1.0208 14.606 2 0 Median NaN NaN NaN 0 0 Median 980090 466250 513840 0 0 0 0 0 0 566180 276530 289650 0 0 0 413910 189720 224200 0 0 0 17974 4137 18733 93674;93675;93676 95336 95336 1 KMVVMHPMPR GQFILTPHIMTRAKKKMVVMHPMPRVNEIS TRAKKKMVVMHPMPRVNEISVEVDSDPRAA K K M P R V 0 1 0 0 0 0 0 0 1 0 0 1 3 0 2 0 0 0 0 2 0 0 10 1 1224.6294 F8VPD4;P27708;H7C2E4 F8VPD4 2115 2124 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.0073711 33.866 By matching By MS/MS 1 1 0.71797 0.71341 13.086 2 Median 0.63493 0.65036 NaN 1 0 Median 0.81187 0.78257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1311600 761210 550380 580650 314330 266320 730940 446880 284060 0 0 0 0 0 0 0 0 0 0 0 0 17975 1057 18734 93677;93678 95337;95338 95337 2 KNDKEAAGEGPALYEDPPDQK LRTEPEAKKSKTAAKKNDKEAAGEGPALYE AGEGPALYEDPPDQKTSPSGKPATLKICSW K K N Q K T 3 0 1 3 0 1 3 2 0 0 1 3 0 0 3 0 0 0 1 0 0 0 21 2 2271.0655 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5D9;G3V5M0;G3V359;G3V3Y6 G3V3M6 32 52 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3;4 9.6477E-06 38.736 By matching By MS/MS By MS/MS 1 2 4 0.79446 0.74783 16.661 7 Median 1.0065 1.032 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62864 0.64884 8.5279 2 0 Median 0.83685 0.78773 6.4724 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46840000 26414000 20426000 964950 415510 549450 0 0 0 27671000 16520000 11151000 18204000 9478400 8726000 0 0 0 0 0 0 17976 1112 18735 93679;93680;93681;93682;93683;93684;93685 95339;95340;95341;95342;95343;95344 95344 6 KNDMANMYVLLR QFLHAECHNIIRQEKKNDMANMYVLLRAVS QEKKNDMANMYVLLRAVSTGLPHMIQELQN K K N L R A 1 1 2 1 0 0 0 0 0 0 2 1 2 0 0 0 0 0 1 1 0 0 12 1 1466.7374 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 304 315 CUL2 Cullin-2 yes no 2;3 1.0118E-05 120.12 By MS/MS By matching 2 1 1.424 1.4566 18.118 3 Median 1.2635 1.2923 16.928 2 0 Median 1.6251 1.6356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4729300 2134500 2594800 4483000 1993900 2489100 246320 140550 105770 0 0 0 0 0 0 0 0 0 0 0 0 17977 196 18736 93686;93687;93688 95345;95346 95345 2 KNDMDEPPSGDFGGDEEK QLELHCQVMFRNYQRKNDMDEPPSGDFGGD MDEPPSGDFGGDEEKSRKRKNKDPKFAEME R K N E K S 0 0 1 4 0 0 3 3 0 0 0 2 1 1 2 1 0 0 0 0 0 0 18 1 1965.7898 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 577 594 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 8.0935E-15 113.88 By MS/MS By MS/MS 3 2 0.67474 0.78168 11.023 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6721 0.77857 8.2262 3 1 Plateau 0.86176 0.84235 5.2499 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25480000 14048000 11433000 0 0 0 0 0 0 20228000 11476000 8752000 5252700 2571900 2680800 0 0 0 0 0 0 17978 246 18737;18738 93689;93690;93691;93692;93693 95347;95348;95349;95350;95351;95352;95353 95348 102 7 KNDPLPISTVGTR LNCQKTIYNLVDMERKNDPLPISTVGTRGK ERKNDPLPISTVGTRGKGPKRDEQYRIMWN R K N T R G 0 1 1 1 0 0 0 1 0 1 1 1 0 0 2 1 2 0 0 1 0 0 13 1 1396.7674 Q9NVM9;H0YH12 Q9NVM9 507 519 ASUN Protein asunder homolog yes no 3 0.024356 27.643 By MS/MS By matching By matching 1 1 1 0.96843 0.91329 10.47 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86053 0.91329 NaN 1 0 Median 0.98091 0.93954 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96843 0.77398 NaN 1 0 Median 10208000 5082200 5126200 0 0 0 0 0 0 5835300 3298400 2536900 797340 413220 384120 0 0 0 3575800 1370600 2205200 17979 4136 18739 93694;93695;93696 95354 95354 0 KNFATSLYSMIK SRSEIDLFNIRKEFRKNFATSLYSMIKGDT EFRKNFATSLYSMIKGDTSGDYKKALLLLC R K N I K G 1 0 1 0 0 0 0 0 0 1 1 2 1 1 0 2 1 0 1 0 0 0 12 1 1401.7326 P08758;D6RBL5;D6RBE9 P08758 290 301 ANXA5 Annexin A5;Annexin yes no 2;3 4.4285E-30 208.56 By MS/MS By matching 3 3 1.1217 1.0642 37.811 6 Median 1.1058 1.0781 6.9506 3 0 Median 1.1377 1.0249 59.289 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85503000 39847000 45656000 67208000 30772000 36435000 18296000 9074800 9220800 0 0 0 0 0 0 0 0 0 0 0 0 17980 1909 18740;18741 93697;93698;93699;93700;93701;93702 95355;95356;95357;95358;95359 95357 684 5 KNFDLRPGVIVR GTSQKSERELLEIVKKNFDLRPGVIVRDLD IVKKNFDLRPGVIVRDLDLKKPIYQRTAAY K K N V R D 0 2 1 1 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 2 0 0 12 2 1412.8252 P31153 P31153 351 362 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 3 5.3573E-05 87.001 By MS/MS By MS/MS By matching 1 1 1 0.90748 1.0386 10.656 3 Median 0.80094 0.90293 NaN 1 0 Median 1.0046 1.113 NaN 1 0 Median 0.90748 1.0386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29494000 14331000 15163000 17363000 9744700 7618800 10057000 3433200 6623900 2073400 1153100 920280 0 0 0 0 0 0 0 0 0 17981 2202 18742 93703;93704;93705 95360;95361;95362 95361 3 KNFESLSEAFSVASAAAVLSHNR KEDQVIQLMNAIFSKKNFESLSEAFSVASA AFSVASAAAVLSHNRYHVPVVVVPEGSASD K K N N R Y 5 1 2 0 0 0 2 0 1 0 2 1 0 2 0 5 0 0 0 2 0 0 23 1 2434.2241 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 244 266 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 3;4 3.4352E-16 68.552 By MS/MS By MS/MS 4 3 1.1648 1.1801 87.98 7 Median 1.1092 1.143 117.24 4 1 Median 1.2854 1.1801 5.5292 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29080000 10456000 18623000 21201000 6948400 14252000 7879000 3507900 4371200 0 0 0 0 0 0 0 0 0 0 0 0 17982 1854 18743 93706;93707;93708;93709;93710;93711;93712 95363;95364;95365;95366;95367;95368 95364 6 KNFEWVAER RDLKEVTPEGLQMVKKNFEWVAERVELLLK GLQMVKKNFEWVAERVELLLKSESQCRVVV K K N E R V 1 1 1 0 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 9 1 1177.588 P22234;E9PBS1;D6RF62 P22234 247 255 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.00042648 99.802 By MS/MS By MS/MS 1 1 1.1906 1.1556 27.537 2 Median 1.4077 1.4041 NaN 1 1 Median 1.0069 0.95117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22547000 9399200 13148000 8625300 3500000 5125200 13922000 5899100 8022800 0 0 0 0 0 0 0 0 0 0 0 0 17983 909 18744 93713;93714 95369;95370 95369 2 KNGFVVLK AGASATFPMQCSALRKNGFVVLKGRPCKIV MQCSALRKNGFVVLKGRPCKIVEMSTSKTG R K N L K G 0 0 1 0 0 0 0 1 0 0 1 2 0 1 0 0 0 0 0 2 0 0 8 1 903.55419 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 27 34 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 2 0.017296 55.504 By MS/MS By MS/MS By matching 1 2 1 1.2128 1.1947 11.712 4 Median 1.3044 1.3012 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0607 1.0689 9.8001 2 0 Median 1.4854 1.2459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24943000 10680000 14263000 13984000 5753900 8230200 0 0 0 9962000 4494800 5467300 997220 431220 566000 0 0 0 0 0 0 17984 1287 18745 93715;93716;93717;93718 95371;95372 95372 2 KNGGLGHMNIALLSDLTK VDSHFSHLAWINTPRKNGGLGHMNIALLSD GLGHMNIALLSDLTKQISRDYGVLLEGSGL R K N T K Q 1 0 2 1 0 0 0 3 1 1 4 2 1 0 0 1 1 0 0 0 0 0 18 1 1881.0142 P30048 P30048 149 166 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 3 0.0020428 26.474 By MS/MS By matching 1 1 1.1681 1.1254 17.758 2 Median 0.97677 0.99261 NaN 1 0 Median 1.397 1.276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21213000 10215000 10997000 14096000 7298400 6798000 7116300 2916800 4199400 0 0 0 0 0 0 0 0 0 0 0 0 17985 2183 18746 93719;93720 95373 95373 1 KNGPLEVAGAAVSAGHGLPAK KGGKEFVEAVLELRKKNGPLEVAGAAVSAG VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K K N A K F 5 0 1 0 0 0 1 4 1 0 2 2 0 0 2 1 0 0 0 2 0 0 21 1 1943.0589 O75367;B4DJC3 O75367 251 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 3 5.7328E-09 53.585 By MS/MS By matching 2 1 0.70296 0.74966 3.5627 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68839 0.73168 3.4324 2 0 Median 0.89677 0.76549 NaN 1 0 Median 19653000 10708000 8944800 0 0 0 0 0 0 0 0 0 0 0 0 18836000 10309000 8526200 817230 398620 418610 17986 1662 18747 93721;93722;93723 95374;95375;95376;95377 95376 4 KNHEEEISTLR EMQIEGLKEELAYLKKNHEEEISTLRGQVG AYLKKNHEEEISTLRGQVGGQVSVEVDSAP K K N L R G 0 1 1 0 0 0 3 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 11 1 1354.6841 CON__P08727;P08727;K7EMS3;C9JM50 CON__P08727 216 226 KRT19 Keratin, type I cytoskeletal 19 yes no 3 0.0082907 29.807 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.2648 1.1263 23.507 5 Median 0.7893 0.84115 NaN 1 0 Median 1.7225 1.6089 NaN 1 0 Median 0.99201 1.1263 NaN 1 0 Median 1.2648 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3907 1.2706 NaN 1 0 Median 7170200 3182200 3988000 225180 124920 100260 1453600 502360 951260 3532700 1713000 1819700 735320 314700 420620 0 0 0 1223400 527200 696180 + 17987 752 18748 93724;93725;93726;93727;93728 95378;95379;95380 95378 3 KNHEEEMLALR EMQIEGLKEELAYLRKNHEEEMLALRGQTG AYLRKNHEEEMLALRGQTGGDVNVEMDAAP R K N L R G 1 1 1 0 0 0 3 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 11 1 1368.682 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P08779 253 263 KRT16 Keratin, type I cytoskeletal 16 yes no 3 3.4372E-13 145.91 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.075589 0.087621 105.26 3 Median NaN NaN NaN 0 0 Median 0.33467 0.31142 NaN 1 1 Median 0.075589 0.087621 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.037082 0.038541 NaN 1 1 Median NaN NaN NaN 0 0 Median 21754000 19147000 2606100 0 0 0 6100700 4420700 1679900 12333000 11459000 874410 579650 579650 0 2740100 2688400 51755 0 0 0 + 17988 754 18749 93729;93730;93731;93732;93733 95381;95382;95383;95384;95385 95381 5 KNHEEEMNALR EMQIENLKEELAYLKKNHEEEMNALRGQVG AYLKKNHEEEMNALRGQVGGEINVEMDAAP K K N L R G 1 1 2 0 0 0 3 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1369.6408 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9;K7ESE1;CON__Q6IFX2 CON__Q04695 220 230 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.051934 24.291 By MS/MS By MS/MS 1 1 0.27971 0.2718 215.17 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2277 1.2446 NaN 1 0 Median 0.063725 0.059357 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 922010 519020 402990 0 0 0 0 0 0 698030 305300 392730 223980 213720 10259 0 0 0 0 0 0 + 17989 768;739;787 18750 93734;93735 95386;95387 95386 2 KNILEESLCELVAK AAEVLGLILRYVMERKNILEESLCELVAKQ RKNILEESLCELVAKQLKQHQNTMEDKFIV R K N A K Q 1 0 1 0 1 0 3 0 0 1 3 2 0 0 0 1 0 0 0 1 0 0 14 1 1644.8757 P78527 P78527 2334 2347 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.019969 31.431 By MS/MS By matching By matching 2 1 1 1.2099 1.2807 3.8577 3 Plateau NaN NaN NaN 0 0 Median 1.2749 1.2323 5.4472 2 0 Median 1.0801 1.2277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7777700 3148400 4629300 0 0 0 6796600 2697400 4099200 895570 391970 503590 0 0 0 0 0 0 85597 59038 26559 17990 2647 18751 93736;93737;93738;93739 95388 95388 1 KNILLTIGSYK AYLKAMLSTGFKIPKKNILLTIGSYKNKSE KIPKKNILLTIGSYKNKSELLPTVRLLESL K K N Y K N 0 0 1 0 0 0 0 1 0 2 2 2 0 0 0 1 1 0 1 0 0 0 11 1 1248.7442 F8VPD4;P27708 F8VPD4 1250 1260 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00020896 83.862 By MS/MS By matching By matching 2 2 1 1.0763 1.0396 24.242 5 Median 1.3234 1.3542 9.5174 2 0 Median 0.94668 0.9067 19.346 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.031 0.92006 NaN 1 0 Median 27969000 11815000 16154000 23254000 9645900 13608000 4599900 2128000 2471900 0 0 0 0 0 0 0 0 0 115910 41185 74729 17991 1057 18752 93740;93741;93742;93743;93744 95389;95390;95391 95389 3 KNIPEGSHQYELLK SFLFGSRSSKTFKPKKNIPEGSHQYELLKH KKNIPEGSHQYELLKHAEATLGSGNLRMAV K K N L K H 0 0 1 0 0 1 2 1 1 1 2 2 0 0 1 1 0 0 1 0 0 0 14 1 1654.8679 Q7L9L4;Q9H8S9;D6RCK3 Q7L9L4 17 30 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 3 1.3346E-08 103.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.95065 0.85653 12.447 5 Median 0.84172 0.85529 NaN 1 0 Median 0.90573 0.82745 NaN 1 0 Median 1.0303 1.0265 NaN 1 0 Median 0.95065 0.85653 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2548 1.089 NaN 1 0 Median 40728000 20369000 20359000 14914000 7243300 7671000 6363200 3379600 2983500 9757700 4745400 5012300 7194600 3844900 3349700 0 0 0 2498400 1155400 1343000 17992 3229 18753 93745;93746;93747;93748;93749 95392;95393;95394;95395;95396;95397;95398;95399;95400 95397 9 KNISHDTFGTTYGR KLSMKMPKALKPKKKKNISHDTFGTTYGRI KKNISHDTFGTTYGRIHMQKQDLSKLQTRK K K N G R I 0 1 1 1 0 0 0 2 1 1 0 1 0 1 0 1 3 0 1 0 0 0 14 1 1595.7692 Q9H7B2 Q9H7B2 252 265 RPF2 Ribosome production factor 2 homolog yes yes 3 0.0004226 46.746 By MS/MS By matching 1 1 0.91486 0.90798 16.982 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94449 1.0238 NaN 1 0 Median 0.88615 0.80524 NaN 1 0 Median 5685800 2733400 2952300 0 0 0 0 0 0 0 0 0 0 0 0 4689300 2258100 2431300 996410 475380 521030 17993 3980 18754 93750;93751 95401;95402 95401 2 KNLQYYDISAK KDRKVKAKSIVFHRKKNLQYYDISAKSNYN FHRKKNLQYYDISAKSNYNFEKPFLWLARK K K N A K S 1 0 1 1 0 1 0 0 0 1 1 2 0 0 0 1 0 0 2 0 0 0 11 1 1341.6929 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 159 169 RAN GTP-binding nuclear protein Ran yes no 2;3 2.4659E-10 180.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1.2163 1.159 11.034 10 Median 0.92985 0.94558 12.773 2 0 Median 1.2756 1.1674 4.6879 2 1 Median 1.1583 1.1518 4.5484 2 0 Median 1.3261 1.1947 8.5029 2 0 Median 1.1358 1.2128 NaN 1 1 Median 1.3895 1.2059 NaN 1 0 Median 100750000 46537000 54212000 19093000 9398700 9694200 5518200 2394600 3123600 49339000 23366000 25973000 14739000 6429900 8309100 7737300 3514200 4223100 4322400 1433400 2888900 17994 623 18755 93752;93753;93754;93755;93756;93757;93758;93759;93760;93761 95403;95404;95405;95406;95407;95408;95409;95410;95411;95412;95413;95414;95415;95416 95406 14 KNLTQDEMQR ASTLHRLYHLSREMRKNLTQDEMQRMSTRV SREMRKNLTQDEMQRMSTRVLLATLSIPIT R K N Q R M 0 1 1 1 0 2 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 10 1 1261.6085 Q14152 Q14152 308 317 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0025653 43.512 By matching By MS/MS By matching By matching 1 2 1 1 1.0875 1.0563 3.8268 5 Median 1.0475 1.0735 NaN 1 0 Median 1.124 1.0566 0.034989 2 0 Median 1.0076 1.0447 NaN 1 0 Median 1.0875 0.97375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4074700 1760000 2314800 315030 157360 157670 2475100 998670 1476400 831880 364070 467800 452760 239880 212890 0 0 0 0 0 0 17995 2860 18756 93762;93763;93764;93765;93766 95417 95417 1 KNLVELAELELK QELIDFKTRRVAAFRKNLVELAELELKHAK AFRKNLVELAELELKHAKGNLQLLQNCLAV R K N L K H 1 0 1 0 0 0 3 0 0 0 4 2 0 0 0 0 0 0 0 1 0 0 12 1 1397.813 A0A0A0MRI2;Q9UNH7 A0A0A0MRI2 387 398 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 2 0.00087712 67.385 By MS/MS 1 1.3179 1.2394 NaN 1 Median NaN NaN NaN 0 0 Median 1.3179 1.2394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2537600 1103000 1434600 0 0 0 2537600 1103000 1434600 0 0 0 0 0 0 0 0 0 0 0 0 17996 161 18757 93767 95418 95418 1 KNNLRDWLR FSKRYLKYLTKKYLKKNNLRDWLRVVANSK TKKYLKKNNLRDWLRVVANSKESYELRYFQ K K N L R V 0 2 2 1 0 0 0 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 9 2 1213.668 K7EMH1;K7ERI7;P35268;K7ELC4;C9JYQ9;H0Y8C2;Q6P5R6 K7EMH1 60 68 RPL22;RPL22L1 60S ribosomal protein L22;60S ribosomal protein L22-like 1 yes no 3 0.00081716 71.614 By MS/MS By MS/MS By MS/MS 1 2 1 1.3127 1.4276 12.097 4 Median 1.1489 1.3323 NaN 1 0 Median 1.3127 1.4024 12.274 2 0 Median 1.4272 1.6672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43424000 18808000 24615000 19877000 8627100 11249000 16124000 7162300 8961600 7423300 3019000 4404300 0 0 0 0 0 0 0 0 0 17997 1382 18758 93768;93769;93770;93771 95419;95420;95421;95422;95423;95424;95425;95426 95426 8 KNNVNVASLTQSEIR VEVQLKDLILADYGKKNNVNVASLTQSEIR KNNVNVASLTQSEIRDIILGMEISAPSQQR K K N I R D 1 1 3 0 0 1 1 0 0 1 1 1 0 0 0 2 1 0 0 2 0 0 15 1 1671.8904 Q6P2Q9 Q6P2Q9 1994 2008 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 4.6452E-05 74.789 By MS/MS 1 1.2116 1.1696 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2116 1.1696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2318500 858410 1460100 0 0 0 0 0 0 0 0 0 2318500 858410 1460100 0 0 0 0 0 0 17998 3157 18759 93772 95427 95427 1 KNPASLPLTQAALK SDGKKQEGPATQVSKKNPASLPLTQAALKV KKNPASLPLTQAALKVLAQKASEAQPPVAR K K N L K V 3 0 1 0 0 1 0 0 0 0 3 2 0 0 2 1 1 0 0 0 0 0 14 1 1450.8508 Q13428 Q13428 1065 1078 TCOF1 Treacle protein yes yes 2;3 3.9786E-05 85.845 By matching By matching By MS/MS By MS/MS By matching 1 2 3 2 1 0.70234 0.79815 15.011 9 Median 0.81381 0.82972 NaN 1 0 Median 0.6301 0.61607 11.142 2 0 Median 0.70234 0.81555 7.3079 3 0 Median 0.87997 0.84317 8.2122 2 0 Median 0.67204 0.7153 NaN 1 0 Median NaN NaN NaN 0 0 Median 59273000 34102000 25172000 1999500 1165400 834050 1397700 729020 668650 49281000 28765000 20515000 3894000 2022700 1871300 2701400 1419000 1282400 0 0 0 17999 2816 18760 93773;93774;93775;93776;93777;93778;93779;93780;93781 95428;95429;95430;95431;95432;95433;95434 95433 7 KNPAVQAGSIVVLQGGEETQR ALFALNRQRLCERLRKNPAVQAGSIVVLQG AGSIVVLQGGEETQRYCTDTGVLFRQESFF R K N Q R Y 2 1 1 0 0 3 2 3 0 1 1 1 0 0 1 1 1 0 0 3 0 0 21 1 2180.1549 A0A494C194;K7ES25;A0A494C165;P12955 A0A494C194 36 56 PEPD Xaa-Pro dipeptidase yes no 3 0.049694 17.72 By MS/MS By matching 1 1 1.0236 0.97792 23.302 2 Median 0.83028 0.82936 NaN 1 0 Median 1.2619 1.1531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6508700 3399400 3109300 4400800 2529300 1871500 2108000 870130 1237900 0 0 0 0 0 0 0 0 0 0 0 0 18000 465 18761 93782;93783 95435 95435 0 KNPDSQYGELIEK GYTHLSAGELLRDERKNPDSQYGELIEKYI ERKNPDSQYGELIEKYIKEGKIVPVEITIS R K N E K Y 0 0 1 1 0 1 2 1 0 1 1 2 0 0 1 1 0 0 1 0 0 0 13 1 1519.7518 P30085;Q5T0D2 P30085 43 55 CMPK1 UMP-CMP kinase yes no 2;3 1.1854E-06 116.84 By MS/MS By MS/MS By matching 2 2 1 0.88872 0.86744 5.1268 5 Median 0.89759 0.91057 2.0037 2 0 Median 0.90552 0.82623 2.579 2 0 Median 0.86763 0.86744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116870000 59907000 56964000 88611000 45527000 43084000 24718000 12544000 12174000 3541700 1835800 1705900 0 0 0 0 0 0 0 0 0 18001 2187 18762 93784;93785;93786;93787;93788 95436;95437;95438;95439;95440;95441 95441 6 KNPEVPVNFAEFSK AYAFFVQTCREEHKKKNPEVPVNFAEFSKK KKNPEVPVNFAEFSKKCSERWKTMSGKEKS K K N S K K 1 0 2 0 0 0 2 0 0 0 0 2 0 2 2 1 0 0 0 2 0 0 14 1 1604.8199 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 30 43 HMGB3 High mobility group protein B3 yes no 2;3 0.0039409 29.733 By MS/MS By MS/MS By MS/MS 2 1 1 0.83536 0.80723 21.121 4 Median 0.73133 0.74386 33.838 2 0 Median NaN NaN NaN 0 0 Median 0.75074 0.74554 NaN 1 0 Median 0.97016 0.87402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56893000 31862000 25031000 16369000 9052600 7316100 0 0 0 34135000 19634000 14501000 6389000 3175000 3214000 0 0 0 0 0 0 18002 880 18763 93789;93790;93791;93792 95442;95443;95444;95445 95442 4 KNPEVPVNFAEFSKK AYAFFVQTCREEHKKKNPEVPVNFAEFSKK KNPEVPVNFAEFSKKCSERWKTMSGKEKSK K K N K K C 1 0 2 0 0 0 2 0 0 0 0 3 0 2 2 1 0 0 0 2 0 0 15 2 1732.9148 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 30 44 HMGB3 High mobility group protein B3 yes no 3 0.00016176 49.049 By MS/MS By matching 1 1 0.79684 0.88537 2.9806 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76831 0.86691 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82644 0.90423 NaN 1 0 Median NaN NaN NaN 0 0 Median 18853000 10403000 8449400 0 0 0 0 0 0 17210000 9632700 7577100 0 0 0 1642900 770570 872290 0 0 0 18003 880 18764 93793;93794 95446 95446 1 KNPGVGNGDDEAAELMQQVNVLK QRTAAAPKAGPGVVRKNPGVGNGDDEAAEL DDEAAELMQQVNVLKLTVEDLEKERDFYFG R K N L K L 2 0 3 2 0 2 2 3 0 0 2 2 1 0 1 0 0 0 0 3 0 0 23 1 2425.1907 Q15691 Q15691 182 204 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3 4.8119E-05 34.009 By MS/MS By matching By MS/MS 1 1 1 0.84643 0.84757 8.9022 3 Plateau 0.81547 0.79422 NaN 1 0 Median 0.84643 0.76283 NaN 1 0 Median 0.86643 0.9045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22345000 11123000 11222000 7921200 4356100 3565100 1582400 852880 729500 12842000 5913900 6927800 0 0 0 0 0 0 0 0 0 18004 2963 18765 93795;93796;93797 95447;95448;95449;95450 95450 4 KNPLPPSVGVVDKK NAAGKQLRKESQKDRKNPLPPSVGVVDKKE RKNPLPPSVGVVDKKEETQPPVALKKEGIR R K N K K E 0 0 1 1 0 0 0 1 0 0 1 3 0 0 3 1 0 0 0 3 0 0 14 2 1476.8664 Q8NC51 Q8NC51 79 92 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 1.3745E-07 116.63 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 4 0.64608 0.66923 15.237 12 Median 0.63065 0.61342 3.5654 2 0 Median 0.57883 0.54795 27.369 2 0 Median 0.56807 0.66878 17.023 4 0 Median 0.69644 0.69522 2.2752 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45072000 26211000 18861000 10134000 6023500 4110400 8600000 4889100 3710900 11427000 6722900 4704000 14911000 8575100 6335800 0 0 0 0 0 0 18005 3414 18766 93798;93799;93800;93801;93802;93803;93804;93805;93806;93807;93808;93809 95451;95452;95453;95454;95455;95456;95457;95458;95459;95460;95461;95462;95463;95464;95465;95466;95467;95468;95469;95470 95456 20 KNPQAVLDVLK ARLLQTSNITKLEQKKNPQAVLDVLKFYDS LEQKKNPQAVLDVLKFYDSNTVKQKYLSFT K K N L K F 1 0 1 1 0 1 0 0 0 0 2 2 0 0 1 0 0 0 0 2 0 0 11 1 1223.7238 Q13177;B1AKS5 Q13177 118 128 PAK2;PAK3 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 no no 2;3 8.8882E-05 117.52 By MS/MS By matching By matching 2 2 1 1.0119 0.94919 17.095 5 Median 1.1306 1.063 16.012 2 0 Median 1.1198 1.0693 17.444 2 0 Median NaN NaN NaN 0 0 Median 0.87643 0.80925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26702000 10821000 15881000 18987000 6832800 12154000 6885000 3539200 3345800 0 0 0 830620 449330 381280 0 0 0 0 0 0 18006 2794 18767 93810;93811;93812;93813;93814 95471;95472;95473 95472 3 KNPSIAVPIVLK RIYADKAADIIDGLRKNPSIAVPIVLKRLK GLRKNPSIAVPIVLKRLKMKEEEWREAQRG R K N L K R 1 0 1 0 0 0 0 0 0 2 1 2 0 0 2 1 0 0 0 2 0 0 12 1 1277.8071 Q96ST3 Q96ST3 686 697 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.0072058 28.283 By matching By MS/MS By matching 1 1 1 0.93266 0.97451 18.118 3 Median 0.93266 0.97451 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74132 0.84832 NaN 1 0 Median 1.308 1.215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470900 1955400 1515500 590620 275100 315510 0 0 0 2681400 1591100 1090400 198870 89259 109610 0 0 0 0 0 0 18007 3737 18768 93815;93816;93817 95474 95474 1 KNPSIAVPIVLKR RIYADKAADIIDGLRKNPSIAVPIVLKRLK LRKNPSIAVPIVLKRLKMKEEEWREAQRGF R K N K R L 1 1 1 0 0 0 0 0 0 2 1 2 0 0 2 1 0 0 0 2 0 0 13 2 1433.9082 Q96ST3 Q96ST3 686 698 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.0060805 31.693 By MS/MS 1 0.7998 0.91136 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7998 0.91136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9223800 5485900 3737900 0 0 0 0 0 0 9223800 5485900 3737900 0 0 0 0 0 0 0 0 0 18008 3737 18769 93818 95475 95475 1 KNQALNIAWQK DKSKILTTIEDLDQKKNQALNIAWQKVNKD LDQKKNQALNIAWQKVNKDFGSIFSTLLPG K K N Q K V 2 0 2 0 0 2 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 11 1 1312.7252 O95347;A0A0C4DGE5 O95347 1026 1036 SMC2 Structural maintenance of chromosomes protein 2 yes no 3 0.00037171 58.37 By MS/MS 1 0.94789 0.90293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94789 0.90293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1743100 820580 922530 0 0 0 0 0 0 0 0 0 1743100 820580 922530 0 0 0 0 0 0 18009 1766 18770 93819 95476 95476 1 KNQLELLR KRKFQPLFGDFAAEKKNQLELLRVMNSKKP GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K K N L R V 0 1 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 1012.6029 Q15050 Q15050 266 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0033215 138.83 By MS/MS By MS/MS 1 1 1.1579 1.1127 2.8838 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1089 1.1356 NaN 1 0 Median 1.209 1.0902 NaN 1 0 Median 16276000 6705700 9569800 0 0 0 0 0 0 0 0 0 0 0 0 10804000 4400500 6403900 5471200 2305300 3165900 18010 2920 18771 93820;93821 95477;95478;95479 95477 3 KNSLISSLEEEVSILNR EWKAQVARGRQEAERKNSLISSLEEEVSIL SLISSLEEEVSILNRQVLEKEGESKELKRL R K N N R Q 0 1 2 0 0 0 3 0 0 2 3 1 0 0 0 4 0 0 0 1 0 0 17 1 1930.0371 A0A087WY61;Q14980 Q14980 1223 1239 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.078119 3.6613 By matching By MS/MS 1 1 0.99125 1.0607 4.6663 2 Median NaN NaN NaN 0 0 Median 1.1371 1.0963 NaN 1 0 Median 0.86411 1.0263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1826700 891870 934860 0 0 0 718190 322170 396030 1108500 569710 538830 0 0 0 0 0 0 0 0 0 18011 2905;77 18772 93822;93823 95480 95480 1 KNSVVEASEAAYK GDYYRYLAEVASGEKKNSVVEASEAAYKEA EKKNSVVEASEAAYKEAFEISKEQMQPTHP K K N Y K E 3 0 1 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 1 2 0 0 13 1 1394.7042 Q04917;A2IDB2 Q04917 143 155 YWHAH 14-3-3 protein eta yes no 2 0.0052549 43.308 By matching By MS/MS 1 1 1.0965 1.0924 10.225 2 Median 1.0249 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1732 1.1743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4698500 2168400 2530100 1385000 516160 868800 0 0 0 3313600 1652300 1661300 0 0 0 0 0 0 0 0 0 18012 2714 18773 93824;93825 95481 95481 1 KNVGQFSGFPFEK HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K K N E K G 0 0 1 0 0 1 1 2 0 0 0 2 0 3 1 1 0 0 0 1 0 0 13 1 1483.746 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 125 137 DEK Protein DEK yes no 3 0.0010198 41.227 By MS/MS 1 1.1263 1.1777 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1263 1.1777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10047000 5147500 4899700 0 0 0 0 0 0 10047000 5147500 4899700 0 0 0 0 0 0 0 0 0 18013 1166 18774 93826 95482;95483 95482 2 KNVSINTVTYEWAPPVQNQALAR YKRNVMILTNPVAAKKNVSINTVTYEWAPP TYEWAPPVQNQALARQYMQMLPKEKQPVAG K K N A R Q 3 1 3 0 0 2 1 0 0 1 1 1 0 0 2 1 2 1 1 3 0 0 23 1 2598.3554 Q9UGI8;F8W7T0 Q9UGI8 102 124 TES Testin yes no 3 1.2299E-07 40.756 By MS/MS By MS/MS By matching 2 2 2 0.71394 0.71743 12.978 6 Median 0.63552 0.65695 17.135 2 0 Median NaN NaN NaN 0 0 Median 0.6456 0.69204 0.41416 2 0 Median 0.86552 0.80267 10.777 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17484000 10374000 7109900 10382000 6099400 4282900 0 0 0 6310100 3874500 2435500 791340 399890 391450 0 0 0 0 0 0 18014 4263 18775 93827;93828;93829;93830;93831;93832 95484;95485;95486;95487 95485 4 KNWQNVR YNIHLAVNFLVSLLKKNWQNVRALYIKSTM NFLVSLLKKNWQNVRALYIKSTMGKPQRLY K K N V R A 0 1 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 7 1 943.4988 P62906 P62906 196 202 RPL10A 60S ribosomal protein L10a yes yes 2 0.042479 50.039 By MS/MS By matching By matching By matching 1 1 1 1 1.0381 1.0365 1.3434 4 Median 0.98213 1.0335 NaN 1 0 Median 1.0886 1.0322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98998 1.0396 NaN 1 0 Median 1.1676 1.0625 NaN 1 0 Median 2525600 1183800 1341800 1205800 587370 618410 324960 128760 196200 0 0 0 0 0 0 793260 382870 410390 201560 84791 116770 18015 2608 18776 93833;93834;93835;93836 95488 95488 1 KNWVVTGADDMQIR EVCDLPVRAAKFVARKNWVVTGADDMQIRV RKNWVVTGADDMQIRVFNYNTLERVHMFEA R K N I R V 1 1 1 2 0 1 0 1 0 1 0 1 1 0 0 0 1 1 0 2 0 0 14 1 1631.809 P35606;D6R997;D6RBZ7;D6RCL6;D6RBG7;D6RBT6 P35606 69 82 COPB2 Coatomer subunit beta yes no 3 0.00056112 58.071 By MS/MS 1 2.931 3.0561 NaN 1 Median 2.931 3.0561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15987000 5636000 10350000 15987000 5636000 10350000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18016 2246 18777 93837 95489 95489 1 KNYIFLR SYDWSKGHEFYNPQKKNYIFLRNAAEELKP HEFYNPQKKNYIFLRNAAEELKPRNKK___ K K N L R N 0 1 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 7 1 952.54944 P78406 P78406 350 356 RAE1 mRNA export factor yes yes 2 0.014726 82.263 By MS/MS By MS/MS 1 1 1.2344 1.2298 13.313 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1879 1.3511 NaN 1 0 Median 1.2827 1.1193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10893000 4901300 5991700 0 0 0 0 0 0 7744800 3624200 4120600 3148100 1277100 1871000 0 0 0 0 0 0 18017 2645 18778 93838;93839 95490;95491;95492;95493 95491 4 KNYMSNPSYNYEIVNR FSAEEISDAIREKMKKNYMSNPSYNYEIVN NYMSNPSYNYEIVNRASLACGPMVKWAIAQ K K N N R A 0 1 4 0 0 0 1 0 0 1 0 1 1 0 1 2 0 0 3 1 0 0 16 1 1990.9207 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3369 3384 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0059847 33.872 By matching By MS/MS By matching 1 1 1 0.88153 1.0213 17.967 3 Median 0.72171 0.74998 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88153 1.0213 NaN 1 0 Median 1.1017 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20694000 11789000 8904300 11810000 7267800 4542300 0 0 0 7495900 3885600 3610300 1387700 636030 751690 0 0 0 0 0 0 18018 2865 18779 93840;93841;93842 95494 95494 0 KPAAGLSAAPVPTAPAAGAPLMDFGNDFVPPAPR EDEDEDLEELEVLERKPAAGLSAAPVPTAP PLMDFGNDFVPPAPRGPLPAAPPVAPERQP R K P P R G 9 1 1 2 0 0 0 3 0 0 2 1 1 2 8 1 1 0 0 2 0 0 34 1 3270.686 F8W914;Q9NQC3 F8W914 30 63 RTN4 Reticulon;Reticulon-4 yes no 3 5.3132E-20 72.726 By MS/MS By matching 3 1 0.29702 0.30525 35.065 4 Median 0.288 0.30206 8.593 3 2 Median 0.50232 0.57768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40140000 33678000 6461900 39741000 33450000 6290300 399360 227750 171600 0 0 0 0 0 0 0 0 0 0 0 0 18019 1087 18780 93843;93844;93845;93846 95495;95496;95497 95495 3 KPAAVLKPSDWEK AEDYIFKAVMLPGARKPAAVLKPSDWEKSS ARKPAAVLKPSDWEKSSNGRQWKPQLGFNR R K P E K S 2 0 0 1 0 0 1 0 0 0 1 3 0 0 2 1 0 1 0 1 0 0 13 2 1467.8086 Q9H0D6 Q9H0D6 776 788 XRN2 5-3 exoribonuclease 2 yes yes 3 0.0009298 46.408 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.68701 0.75507 9.1485 4 Median NaN NaN NaN 0 0 Median 0.89737 0.85227 NaN 1 0 Median 0.59794 0.7294 NaN 1 0 Median 0.76326 0.78164 NaN 1 0 Median 0.61837 0.6894 NaN 1 0 Median NaN NaN NaN 0 0 Median 25682000 14760000 10922000 0 0 0 3623700 1862800 1760900 9698300 5635700 4062600 3855900 1967700 1888100 8504000 5293900 3210200 0 0 0 18020 3924 18781 93847;93848;93849;93850 95498;95499;95500;95501;95502;95503 95502 6 KPADLQNLAPGTHPPFITFNSEVK LKGVVFSVTTVDLKRKPADLQNLAPGTHPP PGTHPPFITFNSEVKTDVNKIEEFLEEVLC R K P V K T 2 0 2 1 0 1 1 1 1 1 2 2 0 2 4 1 2 0 0 1 0 0 24 1 2620.3649 Q9Y696 Q9Y696 62 85 CLIC4 Chloride intracellular channel protein 4 yes yes 3;4 1.4755E-16 69.619 By MS/MS By MS/MS 2 2 0.54676 0.52615 2.8886 4 Median 0.50602 0.5143 4.4552 2 1 Median 0.57272 0.52615 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27754000 17481000 10273000 26761000 16799000 9961600 993480 682000 311490 0 0 0 0 0 0 0 0 0 0 0 0 18021 4483 18782 93851;93852;93853;93854 95504;95505;95506;95507;95508 95505 5 KPAEDEWGKTPDAMK MQNQRGGRALFQDIKKPAEDEWGKTPDAMK KPAEDEWGKTPDAMKAAMALEKKLNQALLD K K P M K A 2 0 0 2 0 0 2 1 0 0 0 3 1 0 2 0 1 1 0 0 0 0 15 2 1701.8032 P02792 P02792 84 98 FTL Ferritin light chain yes yes 3 0.0038272 28.956 By MS/MS 1 0.33886 0.30577 NaN 1 Median NaN NaN NaN 0 0 Median 0.33886 0.30577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2064500 1377200 687230 0 0 0 2064500 1377200 687230 0 0 0 0 0 0 0 0 0 0 0 0 18022 1837 18783 93855 95509 95509 1 KPAFNLSAFGTLSPSLGNSSILK ERSHSLSQHTATSSKKPAFNLSAFGTLSPS FGTLSPSLGNSSILKTSQLGDSPFYPGKTT K K P L K T 2 0 2 0 0 0 0 2 0 1 4 2 0 2 2 5 1 0 0 0 0 0 23 1 2348.274 P49790 P49790 228 250 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.073173 2.5769 By MS/MS 1 0.63483 0.72775 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63483 0.72775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1312400 726480 585910 0 0 0 0 0 0 1312400 726480 585910 0 0 0 0 0 0 0 0 0 18023 2400 18784 93856 95510;95511 95510 2 KPALELLHYLK VMQVKTFSEACLMVRKPALELLHYLKNTSF LMVRKPALELLHYLKNTSFAYPAIRYLLYG R K P L K N 1 0 0 0 0 0 1 0 1 0 4 2 0 0 1 0 0 0 1 0 0 0 11 1 1323.7915 P51398;V9GZ03;V9GYL9 P51398 103 113 DAP3 28S ribosomal protein S29, mitochondrial yes no 3 0.041417 28.806 By MS/MS 1 0.92665 0.8621 NaN 1 Median 0.92665 0.8621 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9481400 4285100 5196300 9481400 4285100 5196300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18024 2431 18785 93857 95512 95512 1 KPALGFYDTSEENYQALDADFR RKRGVDYNAEIPFEKKPALGFYDTSEENYQ DTSEENYQALDADFRKLRQQDLDGELRSEK K K P F R K 3 1 1 3 0 1 2 1 0 0 2 1 0 2 1 1 1 0 2 0 0 0 22 1 2549.171 Q99459 Q99459 219 240 CDC5L Cell division cycle 5-like protein yes yes 3 1.4473E-12 72.145 By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1.0175 0.99085 16.191 5 Median 0.92496 0.95732 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74173 0.84095 NaN 1 0 Median 1.1651 1.1277 18.299 2 0 Median 1.0175 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median 13438000 6721300 6716400 1520500 682300 838200 0 0 0 9991300 5109600 4881700 350820 161540 189280 1575000 767840 807200 0 0 0 18025 3745 18786 93858;93859;93860;93861;93862 95513;95514;95515;95516 95515 4 KPALGFYDTSEENYQALDADFRK RKRGVDYNAEIPFEKKPALGFYDTSEENYQ TSEENYQALDADFRKLRQQDLDGELRSEKE K K P R K L 3 1 1 3 0 1 2 1 0 0 2 2 0 2 1 1 1 0 2 0 0 0 23 2 2677.266 Q99459 Q99459 219 241 CDC5L Cell division cycle 5-like protein yes yes 4 4.0719E-09 50.539 By MS/MS By MS/MS By MS/MS 1 1 1 0.88005 1.0003 7.2557 3 Median 0.88005 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77136 0.96094 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93877 1.1063 NaN 1 0 Median NaN NaN NaN 0 0 Median 32742000 17884000 14857000 2186300 1163000 1023300 0 0 0 23240000 13220000 10020000 0 0 0 7315300 3501000 3814300 0 0 0 18026 3745 18787 93863;93864;93865 95517;95518;95519;95520 95520 4 KPALVSTVEGGQDPK VLCLSQSEGRVLLCRKPALVSTVEGGQDPK KPALVSTVEGGQDPKNFSEIHPGMLLIGFV R K P P K N 1 0 0 1 0 1 1 2 0 0 1 2 0 0 2 1 1 0 0 2 0 0 15 1 1524.8148 Q14690;A0A3B3IUD7 Q14690 707 721 PDCD11 Protein RRP5 homolog yes no 2;3 2.343E-05 80.706 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 1 0.74217 0.84416 35.496 12 Median NaN NaN NaN 0 0 Median 1.0227 0.98243 22.335 2 0 Median 0.73978 0.84972 2.0207 4 0 Median 1.0484 0.98216 72.454 3 1 Median 0.7173 0.77043 4.1971 2 0 Median 0.70626 0.63872 NaN 1 0 Median 64476000 33424000 31052000 0 0 0 6448700 2812800 3635800 38216000 19904000 18312000 6274500 3067900 3206600 12399000 7000100 5399400 1137100 639610 497500 18027 448 18788 93866;93867;93868;93869;93870;93871;93872;93873;93874;93875;93876;93877 95521;95522;95523;95524;95525;95526;95527;95528;95529;95530;95531;95532;95533;95534;95535 95532 15 KPANDITSQLEINFGDLGR EEAHAEDSVMDHHFRKPANDITSQLEINFG DITSQLEINFGDLGRPGRGGRGGRGGRGRG R K P G R P 1 1 2 2 0 1 1 2 0 2 2 1 0 1 1 1 1 0 0 0 0 0 19 1 2087.0647 Q8NC51 Q8NC51 346 364 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 6.7839E-60 228.73 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.0086 0.93329 11.821 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86432 0.88003 17.597 3 0 Median 1.0425 0.97825 7.4579 3 0 Plateau 1.0602 1.0994 NaN 1 0 Median 1.029 0.90972 NaN 1 0 Median 119030000 60857000 58173000 0 0 0 0 0 0 114310000 58612000 55694000 3188800 1502700 1686100 1303700 635940 667810 230740 106540 124190 18028 3414 18789 93878;93879;93880;93881;93882;93883;93884;93885 95536;95537;95538;95539;95540;95541;95542;95543;95544;95545 95539 10 KPASFMTSICDER VPMDYSWARELGLIRKPASFMTSICDERGQ IRKPASFMTSICDERGQELIYAGMPITEVF R K P E R G 1 1 0 1 1 0 1 0 0 1 0 1 1 1 1 2 1 0 0 0 0 0 13 1 1540.7014 P53396 P53396 836 848 ACLY ATP-citrate synthase yes yes 3 0.0092007 41.644 By MS/MS 2 1.1578 1.0917 7.1433 2 Median NaN NaN NaN 0 0 Median 1.1578 1.0917 7.1433 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6341400 2897200 3444200 0 0 0 6341400 2897200 3444200 0 0 0 0 0 0 0 0 0 0 0 0 18029 2467 18790 93886;93887 95546;95547 95547 2 KPASGPGAVVRPPK KKKRFWKSKAREVSKKPASGPGAVVRPPKA KKPASGPGAVVRPPKAPEDFSQNWKALQEW K K P P K A 2 1 0 0 0 0 0 2 0 0 0 2 0 0 4 1 0 0 0 2 0 0 14 2 1359.7987 Q9GZR2;A0A0C4DG31 Q9GZR2 48 61 REXO4 RNA exonuclease 4 yes no 3 0.061416 13.101 By MS/MS 1 0.44267 0.50638 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44267 0.50638 NaN 1 0 Median NaN NaN NaN 0 0 Median 1407500 881720 525790 0 0 0 0 0 0 0 0 0 0 0 0 1407500 881720 525790 0 0 0 18030 3912 18791 93888 95548 95548 1 KPDHVPISSEDER FKPSNKVVQTDETARKPDHVPISSEDERNA ARKPDHVPISSEDERNAIFQLEKAILSNEA R K P E R N 0 1 0 2 0 0 2 0 1 1 0 1 0 0 2 2 0 0 0 1 0 0 13 1 1507.7267 A0AVT1 A0AVT1 810 822 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2;3 9.2006E-05 74.769 By matching By MS/MS 1 2 0.86961 0.88904 13.015 3 Median 0.86961 0.89887 NaN 1 0 Median 0.84233 0.79654 15.538 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7685700 4115000 3570700 762550 373020 389530 6923200 3742000 3181200 0 0 0 0 0 0 0 0 0 0 0 0 18031 489 18792 93889;93890;93891 95549;95550;95551 95549 3 KPDIDITGPK SGSKVQTPEVDVKGKKPDIDITGPKVDINA DVKGKKPDIDITGPKVDINAPDVEVQGKVK K K P P K V 0 0 0 2 0 0 0 1 0 2 0 2 0 0 2 0 1 0 0 0 0 0 10 1 1082.5972 Q09666 Q09666 3375 3384 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0022797 64.04 By MS/MS By MS/MS 1 1 0.79857 0.8582 1.9738 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76554 0.87026 NaN 1 1 Median 0.83302 0.8463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8305300 4228900 4076400 0 0 0 0 0 0 2830300 1339700 1490600 5475000 2889200 2585800 0 0 0 0 0 0 18032 2749 18793 93892;93893 95552;95553;95554;95555 95555 4 KPDQVFQSYKPGEVMVK GVKSTYMFDLLLETRKPDQVFQSYKPGEVM DQVFQSYKPGEVMVKVHVVDLKAESVAAPI R K P V K V 0 0 0 1 0 2 1 1 0 0 0 3 1 1 2 1 0 0 1 3 0 0 17 2 1979.0186 Q96K76 Q96K76 701 717 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 3 7.8719E-08 93.768 By MS/MS By matching By matching 2 2 1 0.7348 0.78691 18.551 5 Median 0.71112 0.76183 4.582 2 0 Median 0.91079 0.95185 16.834 2 0 Median 0.60018 0.65111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34081000 20050000 14030000 19724000 12222000 7502600 2056100 1068100 988010 12300000 6760400 5539800 0 0 0 0 0 0 0 0 0 18033 3690 18794 93894;93895;93896;93897;93898 95556;95557 95557 2 KPDSWDGNREPGPGHEHFR LLPTPDEFPRFEGGRKPDSWDGNREPGPGH WDGNREPGPGHEHFRDTPRPDHPPHDGHSP R K P F R D 0 2 1 2 0 0 2 3 2 0 0 1 0 1 3 1 0 1 0 0 0 0 19 2 2217.01 Q9C0J8 Q9C0J8 1178 1196 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 4;5 4.7896E-05 40.968 By MS/MS By MS/MS 2 2 0.60783 0.64591 20.442 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52215 0.58863 8.9986 2 0 Median 0.77021 0.77151 20.994 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15868000 9744400 6123600 0 0 0 0 0 0 13234000 8320300 4913900 2633800 1424100 1209700 0 0 0 0 0 0 18034 3907 18795 93899;93900;93901;93902 95558;95559;95560;95561;95562;95563 95559 6 KPDTIEVQQMK LALCMGNHELYMRRRKPDTIEVQQMKAQAR MRRRKPDTIEVQQMKAQAREEKHQKQMERA R K P M K A 0 0 0 1 0 2 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1315.6806 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 296 306 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2;3 4.212E-14 141.1 By MS/MS By MS/MS By MS/MS 2 3 2 0.95053 0.93022 8.1366 4 Median NaN NaN NaN 0 0 Median 0.96455 0.9333 NaN 1 1 Median 0.86751 0.9765 13.222 2 2 Median 0.94908 0.92716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16340000 8397000 7942600 0 0 0 3486400 1885600 1600800 10058000 5181600 4876600 2795100 1329800 1465300 0 0 0 0 0 0 18035 2139;879;2235 18796 93903;93904;93905;93906;93907;93908;93909 95564;95565;95566;95567;95568;95569;95570 95568 7 KPEDRPNTSEILR FDKKEKTLLQKLLSKKPEDRPNTSEILRTL SKKPEDRPNTSEILRTLTVWKKSPEKNERH K K P L R T 0 2 1 1 0 0 2 0 0 1 1 1 0 0 2 1 1 0 0 0 0 0 13 2 1553.8162 P19525 P19525 522 534 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 0.00032657 61.038 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.69679 0.69446 30.802 7 Median 0.61737 0.62324 NaN 1 0 Median 0.62781 0.69446 NaN 1 0 Median 0.75365 0.90413 12.601 2 0 Median 0.87851 0.79777 32.152 2 0 Median NaN NaN NaN 0 0 Median 0.47823 0.4149 NaN 1 0 Median 37865000 22727000 15138000 11977000 7329400 4647800 5929000 3823600 2105300 11451000 6336100 5114900 6548700 3898100 2650600 0 0 0 1958700 1339600 619080 18036 2067 18797 93910;93911;93912;93913;93914;93915;93916 95571;95572;95573;95574;95575;95576;95577;95578;95579 95572 9 KPEDWDEEMDGEWEPPVIQNPEYK EDWDKPEHIPDPDAKKPEDWDEEMDGEWEP DGEWEPPVIQNPEYKGEWKPRQIDNPDYKG K K P Y K G 0 0 1 3 0 1 6 1 0 1 0 2 1 0 4 0 0 2 1 1 0 0 24 1 2959.2858 P27797;K7EJB9;K7EL50 P27797 249 272 CALR Calreticulin yes no 3 0.030746 19.538 By MS/MS 1 0.48573 0.46789 NaN 1 Median 0.48573 0.46789 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2960300 2296500 663750 2960300 2296500 663750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18037 2157 18798 93917 95580 95580 1 KPEDWDERPK PPVNPSREIEDPEDRKPEDWDERPKIPDPE DPEDRKPEDWDERPKIPDPEAVKPDDWDED R K P P K I 0 1 0 2 0 0 2 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 10 2 1298.6255 P27824;D6RGY2 P27824 283 292 CANX Calnexin yes no 2;3 0.00012867 83 By MS/MS By MS/MS By MS/MS 3 5 1 0.83191 0.89915 12.212 9 Median 0.64754 0.701 7.9144 3 0 Median 0.84957 0.91793 3.9931 5 0 Median NaN NaN NaN 0 0 Median 0.86966 0.92954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47661000 24374000 23287000 7059600 3912900 3146700 40117000 20225000 19893000 0 0 0 484110 236250 247850 0 0 0 0 0 0 18038 2158 18799 93918;93919;93920;93921;93922;93923;93924;93925;93926 95581;95582;95583;95584;95585;95586;95587;95588;95589;95590;95591;95592 95584 12 KPEILPLFQEAEDKNR EIGDANLQYSKLQERKPEILPLFQEAEDKN PEILPLFQEAEDKNRLLRTVAGGGLETISN R K P N R L 1 1 1 1 0 1 3 0 0 1 2 2 0 1 2 0 0 0 0 0 0 0 16 2 1926.0211 Q8NCM8;A0A3B3ISP9 Q8NCM8 980 995 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 3 6.8594E-06 78.244 By MS/MS 1 2.3328 2.5387 NaN 1 Median 2.3328 2.5387 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27684000 6316200 21368000 27684000 6316200 21368000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18039 3418 18800 93927 95593 95593 1 KPEKPLILQSLGPK VKLRTRTSSSETEEKKPEKPLILQSLGPKT KKPEKPLILQSLGPKTQSVEITKTDTEGKI K K P P K T 0 0 0 0 0 1 1 1 0 1 3 3 0 0 3 1 0 0 0 0 0 0 14 2 1546.9447 Q9Y5K6 Q9Y5K6 240 253 CD2AP CD2-associated protein yes yes 3 0.038394 18.015 By matching By MS/MS 1 2 0.70839 0.80876 6.4101 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70839 0.81898 NaN 1 0 Median 0.70074 0.73728 2.9218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5615800 3543500 2072300 0 0 0 0 0 0 3481300 2141100 1340200 2134400 1402400 732030 0 0 0 0 0 0 18040 4460 18801 93928;93929;93930 95594 95594 1 KPELVISYLPPGMASK ERIVRGSNKIKFVVKKPELVISYLPPGMAS PELVISYLPPGMASKINTKALQSPKRPRSP K K P S K I 1 0 0 0 0 0 1 1 0 1 2 2 1 0 3 2 0 0 1 1 0 0 16 1 1728.9484 P78347;A0A494C1K3 P78347 645 660 GTF2I General transcription factor II-I yes no 2;3 7.4927E-10 105.65 By matching By matching By MS/MS By matching By matching 1 1 4 4 2 0.63414 0.63187 19.624 12 Median 0.59239 0.62734 NaN 1 0 Median 0.75737 0.71663 NaN 1 0 Median 0.49174 0.56525 24.307 4 0 Median 0.67213 0.64837 19.964 4 0 Median NaN NaN NaN 0 0 Median 0.73902 0.67689 28.866 2 0 Median 31889000 21180000 10708000 1416400 986440 429930 523310 284240 239070 29062000 19427000 9635300 671590 367720 303870 0 0 0 215140 115010 100130 18041 2642 18802 93931;93932;93933;93934;93935;93936;93937;93938;93939;93940;93941;93942 95595;95596;95597;95598;95599 95595 5 KPEMFETAIK EKILRNKAKIKFIIKKPEMFETAIKESTSS KFIIKKPEMFETAIKESTSSKSPPRKINSS K K P I K E 1 0 0 0 0 0 2 0 0 1 0 2 1 1 1 0 1 0 0 0 0 0 10 1 1192.6162 P78347;A0A494C1K3 P78347 807 816 GTF2I General transcription factor II-I yes no 2 7.832E-05 134.57 By MS/MS By MS/MS 3 2 0.84587 0.79624 19.253 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56952 0.65119 26.904 3 0 Median 0.86969 0.80098 0.83998 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48860000 29200000 19660000 0 0 0 0 0 0 42022000 25502000 16520000 6837700 3697800 3139900 0 0 0 0 0 0 18042 2642 18803 93943;93944;93945;93946;93947 95600;95601;95602;95603;95604 95600 5 KPEPPVNLK FSFSRLFSSSSNTTKKPEPPVNLKYNAPTS SSNTTKKPEPPVNLKYNAPTSHVTPSVKKR K K P L K Y 0 0 1 0 0 0 1 0 0 0 1 2 0 0 3 0 0 0 0 1 0 0 9 1 1020.5968 A0A087X2D8;O60271 A0A087X2D8 560 568 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.00080541 113.71 By matching By MS/MS 2 2 0.7744 0.76878 13.707 4 Median 0.66267 0.70039 10.046 2 0 Median 0.89549 0.84571 10.357 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12484000 6930400 5553700 2697200 1394700 1302500 9786900 5535700 4251200 0 0 0 0 0 0 0 0 0 0 0 0 18043 134 18804 93948;93949;93950;93951 95605;95606;95607;95608 95606 4 KPEQIVDFLK LASFFSKVLSILISRKPEQIVDFLKKKHDF ILISRKPEQIVDFLKKKHDFVDLIIKHIGT R K P L K K 0 0 0 1 0 1 1 0 0 1 1 2 0 1 1 0 0 0 0 1 0 0 10 1 1215.6863 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;E9PK08;E9PNN8 H7BXH2 135 144 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2 0.027074 37.476 By MS/MS By matching By matching By matching 1 2 1 1 1.0928 1.1566 18.801 5 Median 1.1634 1.2211 NaN 1 0 Median 0.99827 0.99282 21.595 2 0 Median 0.77233 0.96216 NaN 1 0 Median 1.5458 1.36 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14594000 6562300 8031800 8019400 3227900 4791400 3711100 1967300 1743800 2501200 1227600 1273700 362510 139510 222990 0 0 0 0 0 0 18044 946 18805 93952;93953;93954;93955;93956 95609;95610 95609 2 KPEYPKPDTQQMIPFQPR VAPSIVPVLKDEVDRKPEYPKPDTQQMIPF YPKPDTQQMIPFQPRHLAPPGLHPVPGGVF R K P P R H 0 1 0 1 0 3 1 0 0 1 0 2 1 1 5 0 1 0 1 0 0 0 18 2 2199.1147 Q12996;E9PLP8 Q12996 578 595 CSTF3 Cleavage stimulation factor subunit 3 yes no 3;4 6.0413E-13 137.61 By MS/MS 3 0.35583 0.4058 9.0562 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35583 0.4058 9.0562 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32369000 22714000 9655400 0 0 0 0 0 0 32369000 22714000 9655400 0 0 0 0 0 0 0 0 0 18045 2777 18806;18807 93957;93958;93959 95611;95612;95613;95614;95615 95614 1494 5 KPFEEHWR IDEYDYSKPIQGQQKKPFEEHWRKHTLSYV PIQGQQKKPFEEHWRKHTLSYVDVGTGKVT K K P W R K 0 1 0 0 0 0 2 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 8 1 1127.5512 P31040;D6RFM5;A0A087X1I3 P31040 616 623 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.037194 42.109 By MS/MS By matching 1 1 0.39125 0.36518 62.831 2 Median 0.56685 0.56945 NaN 1 0 Median 0.27005 0.23419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7797400 5195200 2602300 5057100 2879400 2177700 2740300 2315800 424510 0 0 0 0 0 0 0 0 0 0 0 0 18046 2200 18808 93960;93961 95616 95616 1 KPFGHNQSQQDILQENTILK VWSVGVIFYQCLYGRKPFGHNQSQQDILQE NQSQQDILQENTILKATEVQFPPKPVVTPE R K P L K A 0 0 2 1 0 4 1 1 1 2 2 2 0 1 1 1 1 0 0 0 0 0 20 1 2337.2077 Q86UE8;J3QLK5;Q9UKI8 Q86UE8 679 698 TLK2;TLK1 Serine/threonine-protein kinase tousled-like 2;Serine/threonine-protein kinase tousled-like 1 yes no 3;4 6.7703E-09 62.966 By MS/MS By matching 2 3 0.78998 0.88819 13.005 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77689 0.88725 0.14926 2 0 Median 0.99988 0.97678 18.357 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20678000 11479000 9199400 0 0 0 0 0 0 17698000 10043000 7654500 2980600 1435800 1544800 0 0 0 0 0 0 18047 3277 18809 93962;93963;93964;93965;93966 95617;95618;95619 95619 3 KPFMLDEEGDTQTEETQPSETK MIFDPTMSKKKKKKKKPFMLDEEGDTQTEE EGDTQTEETQPSETKEVEPEPTEDKDLEAD K K P T K E 0 0 0 2 0 2 5 1 0 0 1 2 1 1 2 1 4 0 0 0 0 0 22 1 2539.1272 P20042 P20042 21 42 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 1.7365E-23 112.58 By MS/MS By MS/MS 1 2 0.74049 0.70334 10.471 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77124 0.80652 NaN 1 0 Median 0.71546 0.67955 4.8644 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24666000 14013000 10653000 0 0 0 0 0 0 9763500 4811700 4951800 14903000 9201300 5701600 0 0 0 0 0 0 18048 2072 18810;18811 93967;93968;93969 95620;95621;95622;95623;95624 95622 835 5 KPFVYTQGQAVLNR PGVCWLAPEQTAGKKKPFVYTQGQAVLNRA KKPFVYTQGQAVLNRAFFPCFDTPAVKYKY K K P N R A 1 1 1 0 0 2 0 1 0 0 1 1 0 1 1 0 1 0 1 2 0 0 14 1 1619.8784 Q9H4A4;A6NKB8;C9JMZ3;A0A087WU27;A0A087WUS4 Q9H4A4 163 176 RNPEP Aminopeptidase B yes no 2;3 6.9921E-05 73.877 By MS/MS By MS/MS 2 2 0.65702 0.62865 29.685 4 Median 0.61692 0.61852 36.764 2 1 Median 0.69321 0.63482 35.851 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41498000 25962000 15536000 31214000 19849000 11364000 10285000 6113100 4171700 0 0 0 0 0 0 0 0 0 0 0 0 18049 3964 18812 93970;93971;93972;93973 95625;95626;95627 95626 3 KPFYPALIR APESVLAEHYQDLRRKPFYPALIRYMSSGP YQDLRRKPFYPALIRYMSSGPVVAMVWEGY R K P I R Y 1 1 0 0 0 0 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 0 9 1 1103.6492 Q4TT34;F2Z2X0;O00746;H0Y6J0;A2IDC9 Q4TT34 99 107 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2 0.0011635 96.19 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.75072 0.71144 43.609 4 Median 0.50789 0.50128 NaN 1 0 Median 1.1097 0.97863 NaN 1 0 Median 0.49889 0.5172 NaN 1 0 Median 1.3254 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27123000 17105000 10018000 11175000 7288400 3886100 652570 269690 382880 12714000 8459700 4254700 2581500 1087100 1494400 0 0 0 0 0 0 18050 992 18813 93974;93975;93976;93977 95628;95629;95630 95628 3 KPGADLSDYFNYGFNEDTWK LLEVDLDSFEDKPWRKPGADLSDYFNYGFN LSDYFNYGFNEDTWKAYCEKQKRIRMGLEV R K P W K A 1 0 2 3 0 0 1 2 0 0 1 2 0 2 1 1 1 1 2 0 0 0 20 1 2366.0491 Q6UN15;A0A0B4J203 Q6UN15 167 186 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 3 0.067864 14.46 By MS/MS 1 0.72934 0.8334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72934 0.8334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1802000 1019900 782100 0 0 0 0 0 0 1802000 1019900 782100 0 0 0 0 0 0 0 0 0 18051 3185 18814 93978 95631 95631 1 KPGDLSDELR LYYEGKEFETRLKEKKPGDLSDELRISLGM RLKEKKPGDLSDELRISLGMPVGPNAHKVP K K P L R I 0 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 1 1128.5775 Q13435;E9PPJ0;H0YEX5 Q13435 605 614 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.00090816 72.643 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.83678 0.92391 24.663 6 Median 1.0986 1.1426 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76027 0.86123 NaN 1 0 Median 1.0253 0.98534 NaN 1 0 Median 0.78734 0.86631 30.562 3 0 Median NaN NaN NaN 0 0 Median 52844000 25429000 27414000 3442000 1464400 1977500 0 0 0 6167000 3539500 2627500 2932300 1451900 1480400 40303000 18974000 21329000 0 0 0 18052 2817 18815 93979;93980;93981;93982;93983;93984 95632;95633;95634;95635;95636;95637 95633 6 KPGGFDISLFYR DLRDTGIFLDLMHLKKPGGFDISLFYRDII HLKKPGGFDISLFYRDIISIAEDEDLRVHF K K P Y R D 0 1 0 1 0 0 0 2 0 1 1 1 0 2 1 1 0 0 1 0 0 0 12 1 1398.7296 P12956;B1AHC9 P12956 207 218 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 5.6416E-06 132.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 2 2 3 1.0322 0.98148 15.272 16 Median 1.0189 1.0206 15.362 3 1 Median 1.1095 1.0073 8.2589 2 0 Median 0.87776 0.95443 13.719 4 0 Median 1.188 1.0893 6.4096 2 0 Median 0.85158 0.91217 3.941 2 0 Median 1.056 0.92904 27.21 3 0 Median 208600000 101660000 106940000 41586000 20659000 20926000 53934000 24193000 29741000 97811000 49697000 48114000 11186000 4942800 6243600 3101000 1754900 1346100 985440 416740 568700 18053 1985 18816 93985;93986;93987;93988;93989;93990;93991;93992;93993;93994;93995;93996;93997;93998;93999;94000 95638;95639;95640;95641;95642;95643;95644;95645;95646;95647;95648;95649;95650;95651;95652;95653;95654;95655;95656;95657;95658 95648 21 KPGINVASDWSIHLR LSFQHDPETSVLVLRKPGINVASDWSIHLR KPGINVASDWSIHLR_______________ R K P L R - 1 1 1 1 0 0 0 1 1 2 1 1 0 0 1 2 0 1 0 1 0 0 15 1 1691.9107 E9PKU7;Q14697;F5H6X6 Q14697 930 944 GANAB Neutral alpha-glucosidase AB no no 3;4 7.0099E-07 91.207 By MS/MS By MS/MS 2 3 0.98408 0.98796 14.104 5 Median 0.79636 0.83002 4.263 2 0 Median 1.097 1.0189 7.8016 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51597000 27847000 23750000 36152000 20676000 15476000 15445000 7171500 8273600 0 0 0 0 0 0 0 0 0 0 0 0 18054 2896;951 18817 94001;94002;94003;94004;94005 95659;95660;95661;95662;95663;95664;95665;95666 95660 8 KPGMFFNPEESELDLTYGNR RVQPNEAVYTKMMTKKPGMFFNPEESELDL FNPEESELDLTYGNRYKNVKLPDAYERLIL K K P N R Y 0 1 2 1 0 0 3 2 0 0 2 1 1 2 2 1 1 0 1 0 0 0 20 1 2343.0841 P11413 P11413 408 427 G6PD Glucose-6-phosphate 1-dehydrogenase yes yes 3 0.0021364 37.624 By MS/MS 1 0.9064 0.91629 NaN 1 Median 0.9064 0.91629 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2687500 1456000 1231500 2687500 1456000 1231500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18055 1964 18818 94006 95667 95667 1 KPGPGEPLVFGK KAADLQLEMTQKPHKKPGPGEPLVFGKTFT PHKKPGPGEPLVFGKTFTDHMLMVEWNDKG K K P G K T 0 0 0 0 0 0 1 3 0 0 1 2 0 1 3 0 0 0 0 1 0 0 12 1 1224.6867 O15382;B3KSI3;M0QZ10;M0QXF9;M0R2K7 O15382 48 59 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2;3 0.0063883 49.35 By MS/MS By matching By matching 2 1 1 0.68781 0.78409 30.298 3 Median 0.52298 0.4892 NaN 1 0 Median 0.89293 0.86094 NaN 1 0 Median 0.68781 0.78409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5560500 3195800 2364600 3016800 1733900 1283000 494730 269190 225540 2048900 1192800 856120 0 0 0 0 0 0 0 0 0 18056 1543 18819 94007;94008;94009;94010 95668;95669 95668 2 KPGPPVLSSDPNMLSNEEAGHHFEQMLK VNQSKAAPQSPSVPKKPGPPVLSSDPNMLS LSNEEAGHHFEQMLKLSQRSKDELFSIALY K K P L K L 1 0 2 1 0 1 3 2 2 0 3 2 2 1 4 3 0 0 0 1 0 0 28 1 3088.4746 O75694;E9PF10 O75694 998 1025 NUP155 Nuclear pore complex protein Nup155 yes no 4 1.2916E-05 35.55 By MS/MS 1 0.52593 0.61003 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52593 0.61003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14760000 7517300 7242200 0 0 0 0 0 0 14760000 7517300 7242200 0 0 0 0 0 0 0 0 0 18057 1692 18820 94011 95670 95670 1 KPGQSFQEQVEHYR VMKFQDELESGKRPKKPGQSFQEQVEHYRD KKPGQSFQEQVEHYRDKLLQREKEKELERE K K P Y R D 0 1 0 0 0 3 2 1 1 0 0 1 0 1 1 1 0 0 1 1 0 0 14 1 1731.8329 O15042;E7ET15;H7C4V2 O15042 866 879 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 3.1086E-37 177.93 By MS/MS By MS/MS By MS/MS 1 1 1 1.2993 1.356 4.1143 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1621 1.3172 NaN 1 0 Median 1.4527 1.3961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22351000 9876600 12474000 0 0 0 0 0 0 11606000 5572500 6033900 10744000 4304100 6440300 0 0 0 0 0 0 18058 1515 18821 94012;94013;94014 95671;95672;95673 95673 3 KPGQSFQEQVEHYRDK VMKFQDELESGKRPKKPGQSFQEQVEHYRD PGQSFQEQVEHYRDKLLQREKEKELERERE K K P D K L 0 1 0 1 0 3 2 1 1 0 0 2 0 1 1 1 0 0 1 1 0 0 16 2 1974.9548 O15042;E7ET15;H7C4V2 O15042 866 881 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 4 3.9936E-05 64.565 By MS/MS By MS/MS 1 1 0.59209 0.68611 18.96 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68851 0.78455 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50917 0.60002 NaN 1 0 Median NaN NaN NaN 0 0 Median 21871000 12492000 9379700 0 0 0 0 0 0 11655000 6242700 5412200 0 0 0 10217000 6249000 3967500 0 0 0 18059 1515 18822 94015;94016 95674;95675 95674 2 KPGSVVAAAAAEAK KAEADPQAIPKKRGRKPGSVVAAAAAEAKK RKPGSVVAAAAAEAKKKAVKESSIRSVQET R K P A K K 6 0 0 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 0 14 1 1268.7089 P51608;A0A087X1U4 P51608 271 284 MECP2 Methyl-CpG-binding protein 2 yes no 3 0.036154 22.475 By MS/MS 1 0.82316 0.9216 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82316 0.9216 NaN 1 0 Median NaN NaN NaN 0 0 Median 2625500 1484300 1141200 0 0 0 0 0 0 0 0 0 0 0 0 2625500 1484300 1141200 0 0 0 18060 2437 18823 94017 95676 95676 0 KPGTAVVEFATVK LQKYGEVLNLVLSSKKPGTAVVEFATVKAA SKKPGTAVVEFATVKAAELAVQNEVGLVDN K K P V K A 2 0 0 0 0 0 1 1 0 0 0 2 0 1 1 0 2 0 0 3 0 0 13 1 1345.7606 Q9NVM6 Q9NVM6 213 225 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2;3 0.0001937 141.58 By MS/MS By MS/MS By matching 1 4 1 0.99225 0.87739 43.46 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66037 0.69051 NaN 1 0 Median 0.99225 0.87739 12.082 4 0 Median 1.8953 2.2273 NaN 1 0 Median NaN NaN NaN 0 0 Median 18191000 9673600 8517100 0 0 0 0 0 0 7508300 4597800 2910400 8666100 4572300 4093800 2016400 503490 1512900 0 0 0 18061 4135 18824 94018;94019;94020;94021;94022;94023 95677;95678;95679;95680;95681;95682;95683;95684;95685 95678 9 KPGYHAPVALLNDIPQSTEQYDPFAEHRPPK DDDDYSSSTSLLGQKKPGYHAPVALLNDIP STEQYDPFAEHRPPKIADREDEYKKHRRTM K K P P K I 3 1 1 2 0 2 2 1 2 1 2 2 0 1 6 1 1 0 2 1 0 0 31 2 3514.7634 O75533;B4DGZ4;A0A494C1M2 O75533 81 111 SF3B1 Splicing factor 3B subunit 1 yes no 4;5 4.3357E-06 36.533 By MS/MS By matching 2 1 0.41003 0.46558 28.672 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36227 0.4128 17.514 2 1 Median NaN NaN NaN 0 0 Median 0.22383 0.26376 NaN 1 0 Median NaN NaN NaN 0 0 Median 27660000 20744000 6915800 0 0 0 0 0 0 22717000 17133000 5584700 0 0 0 4942200 3611100 1331100 0 0 0 18062 1683 18825 94024;94025;94026 95686;95687 95687 2 KPHIIIATPGR VGGIDSMSQSLALAKKPHIIIATPGRLIDH ALAKKPHIIIATPGRLIDHLENTKGFNLRA K K P G R L 1 1 0 0 0 0 0 1 1 3 0 1 0 0 2 0 1 0 0 0 0 0 11 1 1201.7295 Q9H0S4;F5H1N9 Q9H0S4 142 152 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 3 3.8867E-05 90.913 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 3 0.95195 0.87075 26.343 10 Median 1.2776 1.2953 NaN 1 0 Median 0.97496 0.89126 NaN 1 0 Median 0.83823 0.8507 NaN 1 0 Median 0.82079 0.77746 5.5358 2 0 Median 1.2495 1.3109 38.42 2 0 Median 0.92948 0.84995 10.708 3 0 Median 47106000 25187000 21920000 1523700 645220 878520 1382600 652770 729800 15116000 8005100 7111000 12314000 7196400 5117200 10874000 5500400 5373300 5896600 3186800 2709900 18063 3928 18826 94027;94028;94029;94030;94031;94032;94033;94034;94035;94036 95688;95689;95690;95691;95692;95693;95694;95695;95696;95697;95698;95699;95700;95701;95702;95703;95704 95702 17 KPHIYYGSLEEK TKTKAPDDLVAPVVKKPHIYYGSLEEKERE VVKKPHIYYGSLEEKERERLAKGESGILGK K K P E K E 0 0 0 0 0 0 2 1 1 1 1 2 0 0 1 1 0 0 2 0 0 0 12 1 1462.7456 O43172 O43172 27 38 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 3.5615E-05 88.021 By MS/MS By MS/MS 1 2 1.0399 1.0248 8.9336 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84582 0.88461 NaN 1 0 Median 1.0744 1.0321 1.0046 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12155000 6338000 5817300 0 0 0 0 0 0 7066300 3958200 3108100 5089000 2379800 2709200 0 0 0 0 0 0 18064 1557 18827 94037;94038;94039 95705;95706;95707;95708;95709 95709 5 KPHIYYGSLEEKER TKTKAPDDLVAPVVKKPHIYYGSLEEKERE KKPHIYYGSLEEKERERLAKGESGILGKDG K K P E R E 0 1 0 0 0 0 3 1 1 1 1 2 0 0 1 1 0 0 2 0 0 0 14 2 1747.8893 O43172 O43172 27 40 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 4 0.0001797 66.285 By MS/MS By MS/MS 1 1 0.82478 0.95162 18.792 2 Median 1.004 1.0869 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67757 0.83321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7971500 4638800 3332700 3682800 2129800 1553000 0 0 0 4288600 2508900 1779700 0 0 0 0 0 0 0 0 0 18065 1557 18828 94040;94041 95710;95711;95712 95712 3 KPHTESLELQVR TSAPVWDESASFLIRKPHTESLELQVRGEG LIRKPHTESLELQVRGEGTGVLGSLSLPLS R K P V R G 0 1 0 0 0 1 2 0 1 0 2 1 0 0 1 1 1 0 0 1 0 0 12 1 1435.7783 Q9BSJ8 Q9BSJ8 855 866 ESYT1 Extended synaptotagmin-1 yes yes 2;3 1.6273E-06 154.85 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 4 1.0094 0.92632 18.672 12 Median 0.81439 0.87266 6.0859 3 0 Plateau 1.0344 0.95128 18.637 5 0 Median NaN NaN NaN 0 0 Median 1.1338 1.0896 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.90548 0.82508 16.236 3 0 Median 79361000 39095000 40267000 22829000 12103000 10726000 52490000 25018000 27472000 0 0 0 1473400 612110 861270 0 0 0 2568500 1361800 1206800 18066 3816 18829 94042;94043;94044;94045;94046;94047;94048;94049;94050;94051;94052;94053;94054 95713;95714;95715;95716;95717;95718;95719;95720;95721;95722 95717 10 KPHVVTVAGENR KAQDIETLKKFLLNKKPHVVTVAGENRDAQ LNKKPHVVTVAGENRDAQMLIEDVKRIVHE K K P N R D 1 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 0 0 3 0 0 12 1 1305.7153 Q7KZ85 Q7KZ85 844 855 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.00014935 65.563 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 2 1.0336 1.019 13.782 8 Median NaN NaN NaN 0 0 Median 1.1138 1.068 3.8303 2 0 Median 0.76536 0.90825 NaN 1 0 Median 0.98789 0.95369 NaN 1 0 Median 1.0249 1.1531 20.276 2 0 Median 1.1119 0.98849 19.283 2 0 Median 5381000 2713200 2667800 0 0 0 2007100 977180 1029900 834320 435430 398890 248520 103200 145320 1657400 880610 776810 633660 316770 316890 18067 3213 18830 94055;94056;94057;94058;94059;94060;94061;94062 95723;95724;95725;95726;95727;95728;95729 95727 7 KPIALNIIR LVSKIQVPDYYDIIKKPIALNIIREKVNKC YYDIIKKPIALNIIREKVNKCEYKLASEFI K K P I R E 1 1 1 0 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1036.6757 Q9NRL2 Q9NRL2 1472 1480 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.0028906 74.929 By MS/MS By matching By matching 2 1 3 1.0063 0.94344 24.188 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.1459 1.1125 2 0 Median 0.96194 0.92864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0527 0.93513 26.96 3 0 Median 18506000 9334600 9171200 0 0 0 0 0 0 15353000 7669400 7683500 1177400 583000 594440 0 0 0 1975400 1082100 893280 18068 4084 18831 94063;94064;94065;94066;94067;94068 95730;95731 95731 2 KPIDYTVLDDVGHGVK IIAPANMERPVRYIRKPIDYTVLDDVGHGV PIDYTVLDDVGHGVKWLKAKHGNNQPARTG R K P V K W 0 0 0 3 0 0 0 2 1 1 1 2 0 0 1 0 1 0 1 3 0 0 16 1 1754.9203 B6VEX4;A0A0A0MRT6;Q8IZP0 B6VEX4 139 154 ABI1 Abl interactor 1 yes no 3 0.00040625 53.169 By MS/MS By MS/MS By matching 2 3 1 0.98489 1.0325 46.693 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98489 1.0325 0.0076784 2 1 Median 0.90242 0.90203 56.61 3 0 Median 1.5372 1.6398 NaN 1 0 Median NaN NaN NaN 0 0 Median 31303000 15897000 15405000 0 0 0 0 0 0 23338000 12152000 11185000 3581700 2014600 1567100 4383200 1730000 2653200 0 0 0 18069 171 18832 94069;94070;94071;94072;94073;94074 95732;95733 95732 2 KPIIGILMQK AASLELSRPHGDTAKKPIIGILMQKCRNKV GDTAKKPIIGILMQKCRNKVMKNYGRYYIA K K P Q K C 0 0 0 0 0 1 0 1 0 3 1 2 1 0 1 0 0 0 0 0 0 0 10 1 1139.71 Q92820 Q92820 33 42 GGH Gamma-glutamyl hydrolase yes yes 2 0.014331 44.377 By MS/MS By matching By MS/MS By matching 2 1 1 2 1.0484 1.0266 23.409 6 Median 1.0188 0.97179 1.7972 2 0 Median 1.0406 0.93825 NaN 1 0 Median 1.0226 1.0708 NaN 1 0 Median 1.7411 1.5395 1.9695 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26274000 12783000 13491000 11383000 5685700 5697100 9210700 4391400 4819300 4657800 2306200 2351600 1022900 399840 623110 0 0 0 0 0 0 18070 3560 18833 94075;94076;94077;94078;94079;94080 95734;95735 95735 2 KPILLEGSPGVGK TAMNAQRLLRATKLKKPILLEGSPGVGKTS LKKPILLEGSPGVGKTSLVGALAKASGNTL K K P G K T 0 0 0 0 0 0 1 3 0 1 2 2 0 0 2 1 0 0 0 1 0 0 13 1 1293.7656 Q9NU22 Q9NU22 1747 1759 MDN1 Midasin yes yes 2;3 5.5086E-06 97.734 By MS/MS By matching 2 2 0.79193 0.85086 27.558 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67594 0.76807 0.12954 2 0 Median 1.1213 1.1392 26.918 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9393900 4749700 4644200 0 0 0 0 0 0 7024100 3710400 3313700 2369800 1039300 1330500 0 0 0 0 0 0 18071 4112 18834 94081;94082;94083;94084 95736;95737;95738 95738 3 KPITDDDVDR LMATILHLGKSSLPKKPITDDDVDRISLCL SSLPKKPITDDDVDRISLCLKVLSECSPLM K K P D R I 0 1 0 4 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 10 1 1172.5673 P53618 P53618 603 612 COPB1 Coatomer subunit beta yes yes 2 0.00069422 73.985 By matching By MS/MS By matching By matching 1 2 1 1 0.9141 0.88437 28.64 5 Median 0.83906 0.86794 NaN 1 0 Median 1.2441 1.2078 44.076 2 0 Median 0.9141 1.0454 NaN 1 0 Median 0.84842 0.81534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7504800 3726500 3778300 1227600 650200 577430 5353800 2621200 2732500 611140 295800 315340 312240 159240 153000 0 0 0 0 0 0 18072 2472 18835 94085;94086;94087;94088;94089 95739;95740;95741;95742 95740 4 KPITTGGVTYR PCYEKQHAMQCVQCKKPITTGGVTYREQPW VQCKKPITTGGVTYREQPWHKECFVCTACR K K P Y R E 0 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 3 0 1 1 0 0 11 1 1191.6612 Q14192 Q14192 167 177 FHL2 Four and a half LIM domains protein 2 yes yes 3 0.060422 22.474 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 565400 0 565400 565400 0 565400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18073 2863 18836 94090 95743 95743 1 KPIVPQKEPSPLLEK SLSAKVVDDEIYYFRKPIVPQKEPSPLLEK KPIVPQKEPSPLLEKKIQLLEAKFAELEGG R K P E K K 0 0 0 0 0 1 2 0 0 1 2 3 0 0 4 1 0 0 0 1 0 0 15 2 1702.0029 Q86U86;E7EVG2 Q86U86 1293 1307 PBRM1 Protein polybromo-1 yes no 3;4 1.4836E-06 87.363 By MS/MS By MS/MS By matching By matching 4 3 1 1 0.52047 0.60926 26.977 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40487 0.48131 3.9363 4 0 Median 0.77519 0.79385 13.185 3 0 Median 0.52047 0.60926 NaN 1 0 Median 0.756 0.82142 NaN 1 0 Median 80689000 53402000 27287000 0 0 0 0 0 0 66381000 45319000 21062000 11789000 6693900 5095400 1728800 943510 785250 790450 445290 345150 18074 3273 18837 94091;94092;94093;94094;94095;94096;94097;94098;94099 95744;95745;95746;95747;95748;95749;95750;95751;95752 95751 9 KPKPQINQWK IRLRDKGKVKPVHPKKPKPQINQWKQEKQQ PVHPKKPKPQINQWKQEKQQLSSEQVSRKK K K P W K Q 0 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 1 0 0 0 0 10 2 1265.7244 Q9NW13 Q9NW13 696 705 RBM28 RNA-binding protein 28 yes yes 3 0.02146 26.043 By MS/MS 1 0.74979 0.83591 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74979 0.83591 NaN 1 0 Median NaN NaN NaN 0 0 Median 1597700 867390 730350 0 0 0 0 0 0 0 0 0 0 0 0 1597700 867390 730350 0 0 0 18075 4145 18838 94100 95753 95753 1 KPLDLYR EEKAMGMTNLPAVGRKPLDLYRLYVSVKEI TNLPAVGRKPLDLYRLYVSVKEIGGLTQVN R K P Y R L 0 1 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 7 1 903.5178 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1047 1053 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.066795 41.652 By MS/MS By matching 1 1 0.46942 0.52104 31.747 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54591 0.65218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40364 0.41628 NaN 1 0 Median 4609400 3259100 1350300 0 0 0 0 0 0 3332000 2383400 948600 0 0 0 0 0 0 1277400 875670 401730 18076 1480 18839 94101;94102 95754 95754 1 KPLEALYGYDYFAR YEGIRDVSKWSERTRKPLEALYGYDYFART RKPLEALYGYDYFARTCEKWVDGIRQFKHL R K P A R T 2 1 0 1 0 0 1 1 0 0 2 1 0 1 1 0 0 0 3 0 0 0 14 1 1704.8512 Q86WA6 Q86WA6 191 204 BPHL Valacyclovir hydrolase yes yes 2 0.0012215 57.836 By MS/MS 1 0.67103 0.70239 NaN 1 Median 0.67103 0.70239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6926500 4083800 2842700 6926500 4083800 2842700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18077 3292 18840 94103 95755;95756 95755 2 KPLEAVLR PEASQSPLVLKQAVRKPLEAVLRYLETHPR VLKQAVRKPLEAVLRYLETHPRPPKPDPVK R K P L R Y 1 1 0 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 1 924.57565 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 532 539 MTA1 Metastasis-associated protein MTA1 yes no 2 0.060067 36.395 By matching By matching By matching By matching By MS/MS 1 2 1 2 2 1.0906 1.0679 21.533 8 Median NaN NaN NaN 0 0 Median 1.5425 1.5486 NaN 1 0 Median 0.76644 0.84359 7.1475 2 0 Median 1.1918 1.1301 NaN 1 0 Median 0.88562 0.9883 22.64 2 0 Median 1.2083 1.0746 8.8953 2 0 Median 20088000 10151000 9937600 0 0 0 781240 271140 510100 8112800 4494400 3618400 1939000 860720 1078300 5245700 2598100 2647700 4009400 1926300 2083100 18078 888 18841 94104;94105;94106;94107;94108;94109;94110;94111 95757 95757 1 KPLFHGDSEIDQLFR DIWSIGTIFAELATKKPLFHGDSEIDQLFR KPLFHGDSEIDQLFRIFRALGTPNNEVWPE K K P F R I 0 1 0 2 0 1 1 1 1 1 2 1 0 2 1 1 0 0 0 0 0 0 15 1 1800.9159 P06493;A0A024QZP7;A0A087WZZ9 P06493 201 215 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2;4 0.010141 33.409 By MS/MS By MS/MS 1 1 0.95117 0.96604 23.509 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0437 1.1408 NaN 1 0 Median 0.86689 0.81809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3339500 1683900 1655600 0 0 0 0 0 0 2500400 1260000 1240400 839110 423940 415170 0 0 0 0 0 0 18079 1871 18842 94112;94113 95758;95759 95759 2 KPLIIFTPK NFFHVLRRQILLPFRKPLIIFTPKSLLRHP ILLPFRKPLIIFTPKSLLRHPEARSSFDEM R K P P K S 0 0 0 0 0 0 0 0 0 2 1 2 0 1 2 0 1 0 0 0 0 0 9 1 1055.6743 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 863 871 OGDH 2-oxoglutarate dehydrogenase, mitochondrial no no 2 0.0032737 72.928 By MS/MS By matching By matching By matching By matching 1 3 1 1 1 1.0844 1.0386 16.418 7 Median 0.72952 0.76549 NaN 1 0 Median 1.0865 1.0386 1.0507 3 0 Median 0.93107 1.0656 NaN 1 0 Median 1.2474 1.1882 NaN 1 0 Median 0.75328 0.78906 NaN 1 0 Median NaN NaN NaN 0 0 Median 16420000 9226900 7193400 8310400 5250900 3059600 3604500 1669700 1934800 2026700 1080700 945960 1644700 747420 897310 833970 478200 355770 0 0 0 18080 912 18843 94114;94115;94116;94117;94118;94119;94120 95760;95761 95760 2 KPLIQEESDTIVSSSK LASADDIGTLICKNKKPLIQEESDTIVSSS PLIQEESDTIVSSSKSALHSSVPKSTNDRD K K P S K S 0 0 0 1 0 1 2 0 0 2 1 2 0 0 1 4 1 0 0 1 0 0 16 1 1759.9204 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1361 1376 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 3.275E-05 58.83 By MS/MS By matching 1 1 0.99052 1.0634 18.026 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0648 1.2079 NaN 1 0 Median 0.92143 0.93612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9498400 3924900 5573500 0 0 0 0 0 0 8002400 3074200 4928200 1495900 850660 645280 0 0 0 0 0 0 18081 2762 18844 94121;94122 95762 95762 1 KPLLESGTLGTK VDARMYMDRRCVYYRKPLLESGTLGTKGNV YYRKPLLESGTLGTKGNVQVVIPFLTESYS R K P T K G 0 0 0 0 0 0 1 2 0 0 3 2 0 0 1 1 2 0 0 0 0 0 12 1 1242.7184 P22314 P22314 593 604 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 1.6387E-09 176.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 4 2 1 1.0696 1.0865 15.907 22 Median 0.94298 0.97099 12.541 7 1 Median 1.2062 1.1344 7.7154 8 1 Median 0.90788 1.0379 18.38 4 1 Median 1.2264 1.1683 4.9084 2 0 Median NaN NaN NaN 0 0 Median 1.6861 1.5262 NaN 1 0 Median 456420000 216730000 239690000 180520000 93452000 87069000 252320000 111830000 140490000 17637000 8801400 8835300 5054400 2322200 2732200 0 0 0 891790 327080 564710 18082 2100 18845 94123;94124;94125;94126;94127;94128;94129;94130;94131;94132;94133;94134;94135;94136;94137;94138;94139;94140;94141;94142;94143;94144 95763;95764;95765;95766;95767;95768;95769;95770;95771;95772;95773;95774;95775;95776;95777;95778;95779;95780;95781;95782;95783;95784;95785;95786;95787;95788;95789;95790;95791;95792;95793;95794;95795;95796;95797;95798 95782 36 KPLPDHVSIVEPK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKKPLPDHVSIVEPKDEILPTTPISEQKGG K K P P K D 0 0 0 1 0 0 1 0 1 1 1 2 0 0 3 1 0 0 0 2 0 0 13 1 1457.8242 P23396;E9PL09;E9PPU1;H0YEU2;E9PSF4 P23396 202 214 RPS3 40S ribosomal protein S3 yes no 2;3 1.0264E-07 144.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 2 2 1 0.74057 0.6795 34.737 12 Median 0.709 0.72828 58.731 4 3 Median 0.69687 0.635 20.952 3 0 Median 0.7443 0.75943 16.917 2 0 Median 0.86736 0.77126 5.4296 2 0 Median NaN NaN NaN 0 0 Median 0.72503 0.62924 NaN 1 0 Median 142550000 83827000 58719000 58131000 34675000 23457000 51252000 30446000 20806000 19411000 10786000 8625000 11236000 6451300 4784800 0 0 0 2516200 1470100 1046100 18083 2112 18846 94145;94146;94147;94148;94149;94150;94151;94152;94153;94154;94155;94156;94157;94158;94159 95799;95800;95801;95802;95803;95804;95805;95806;95807;95808;95809;95810;95811;95812;95813;95814;95815;95816;95817;95818;95819;95820;95821;95822;95823;95824;95825;95826;95827;95828;95829;95830;95831;95832;95833;95834;95835;95836;95837 95827 39 KPLPDHVSIVEPKDEILPTTPISEQK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKDEILPTTPISEQKGGKPEPPAMPQPVPT K K P Q K G 0 0 0 2 0 1 3 0 1 3 2 3 0 0 5 2 2 0 0 2 0 0 26 2 2909.575 P23396;E9PL09;E9PPU1;H0YEU2;E9PSF4 P23396 202 227 RPS3 40S ribosomal protein S3 yes no 4 1.5016E-31 105.24 By MS/MS By matching 1 1 0.37857 0.418 23.931 2 Median 0.41912 0.49507 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34194 0.35293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36842000 25821000 11021000 34020000 23915000 10105000 0 0 0 2821800 1906000 915800 0 0 0 0 0 0 0 0 0 18084 2112 18847 94160;94161 95838;95839 95839 2 KPLRVDLILENTSK TKKRTKVQKKSLLLKKPLRVDLILENTSKV KKPLRVDLILENTSKVPAPKDVLAHQVPNA K K P S K V 0 1 1 1 0 0 1 0 0 1 3 2 0 0 1 1 1 0 0 1 0 0 14 2 1624.9512 Q9NZM5;M0QX73 Q9NZM5 114 127 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 3 0.00099627 39.629 By MS/MS By matching 1 1 0.77018 0.79503 16.08 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77869 0.89077 NaN 1 0 Median 0.76177 0.70958 NaN 1 0 Median 12365000 7154600 5210500 0 0 0 0 0 0 0 0 0 0 0 0 11577000 6781800 4795100 788240 372820 415430 18085 4193 18848 94162;94163 95840;95841 95841 2 KPLTPYFR PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA KHPDFPKKPLTPYFRFFMEKRAKYAKLHPE K K P F R F 0 1 0 0 0 0 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 0 8 1 1020.5757 P17480;E9PKP7;E9PMM2 P17480 114 121 UBTF Nucleolar transcription factor 1 yes no 2 0.0081316 74.255 By MS/MS By MS/MS By MS/MS 1 1 2 0.78879 0.77504 4.5857 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63877 0.72524 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73496 0.80855 NaN 1 0 Median 0.8766 0.77504 1.5893 2 0 Median 28614000 15853000 12761000 0 0 0 0 0 0 4676800 2684100 1992700 0 0 0 15388000 8798800 6589100 8549200 4370100 4179100 18086 2040 18849 94164;94165;94166;94167 95842;95843;95844;95845 95843 4 KPLTSSSAAPQRPISTQR AVAPSLVAPALNKPKKPLTSSSAAPQRPIS TSSSAAPQRPISTQRTAAAPKAGPGVVRKN K K P Q R T 2 2 0 0 0 2 0 0 0 1 1 1 0 0 3 4 2 0 0 0 0 0 18 2 1924.049 Q15691 Q15691 151 168 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3;4 4.2607E-15 140.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 9 5 4 3 4 0.70053 0.77345 20.723 31 Plateau 0.54855 0.62562 13.733 6 0 Median 0.66242 0.68311 24.204 9 2 Median 0.66048 0.75793 10.121 5 0 Median 0.74112 0.75251 7.6221 4 0 Linear 0.96028 1.0954 11.831 3 0 Median 0.74201 0.74853 8.4764 4 0 Median 402230000 231750000 170490000 106710000 64437000 42268000 49554000 29177000 20377000 75795000 42932000 32863000 152160000 85918000 66244000 13854000 7061500 6792700 4163900 2222700 1941200 18087 2963 18850 94168;94169;94170;94171;94172;94173;94174;94175;94176;94177;94178;94179;94180;94181;94182;94183;94184;94185;94186;94187;94188;94189;94190;94191;94192;94193;94194;94195;94196;94197;94198 95846;95847;95848;95849;95850;95851;95852;95853;95854;95855;95856;95857;95858;95859;95860;95861;95862;95863;95864;95865;95866;95867;95868;95869;95870;95871;95872;95873;95874;95875;95876;95877;95878;95879;95880;95881;95882;95883;95884;95885;95886;95887;95888;95889 95869 44 KPLVIIAEDVDGEALSTLVLNR IQSIVPALEIANAHRKPLVIIAEDVDGEAL EDVDGEALSTLVLNRLKVGLQVVAVKAPGF R K P N R L 2 1 1 2 0 0 2 1 0 2 4 1 0 0 1 1 1 0 0 3 0 0 22 1 2364.3264 P10809 P10809 269 290 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 1.4568E-24 121.26 By MS/MS By MS/MS 2 8 1.1089 1.0257 12.623 10 Median 1.0043 1.0184 1.5402 2 1 Median 1.1679 1.0705 13.944 8 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26530000 12179000 14351000 3269400 1731700 1537700 23260000 10447000 12813000 0 0 0 0 0 0 0 0 0 0 0 0 18088 1947 18851 94199;94200;94201;94202;94203;94204;94205;94206;94207;94208 95890;95891;95892;95893;95894;95895;95896;95897;95898 95895 9 KPMSLASGLVPAAPPK LPKQPAPTTIGGLNKKPMSLASGLVPAAPP PMSLASGLVPAAPPKRPAVASARPSILPSK K K P P K R 3 0 0 0 0 0 0 1 0 0 2 2 1 0 4 2 0 0 0 1 0 0 16 1 1562.8854 E7EVA0;P27816;H7C4C5;B5MEG9 E7EVA0 1884 1899 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 2.6583E-05 68.944 By MS/MS By MS/MS By MS/MS By matching 3 4 9 1 0.60787 0.57904 39.059 17 Median 0.38978 0.39761 16.786 3 1 Plateau NaN NaN NaN 0 0 Median 0.87235 1.014 13.231 4 0 Linear 0.59393 0.56265 19.286 9 0 Median 1.2324 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median 77820000 46571000 31249000 21481000 14711000 6769800 0 0 0 39884000 21821000 18063000 15115000 9344000 5770900 1340000 694450 645590 0 0 0 18089 895 18852;18853 94209;94210;94211;94212;94213;94214;94215;94216;94217;94218;94219;94220;94221;94222;94223;94224;94225 95899;95900;95901;95902;95903;95904;95905;95906;95907;95908;95909;95910 95901 325 12 KPMVLGHEASGTVEK VHYWEYGRIGNFIVKKPMVLGHEASGTVEK KPMVLGHEASGTVEKVGSSVKHLKPGDRVA K K P E K V 1 0 0 0 0 0 2 2 1 0 1 2 1 0 1 1 1 0 0 2 0 0 15 1 1581.8185 Q00796;H0YLA4;H0YKB3 Q00796 64 78 SORD Sorbitol dehydrogenase yes no 3 6.02E-05 71.08 By matching By MS/MS By matching 1 2 1 1.1544 1.096 10.664 4 Median 1.207 1.3032 NaN 1 0 Median 1.1544 1.041 0.62497 2 0 Median 1.0543 1.1489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11161000 4887900 6272900 964840 318420 646410 9001900 4085500 4916400 1194000 483960 710020 0 0 0 0 0 0 0 0 0 18090 2679 18854 94226;94227;94228;94229 95911;95912 95911 2 KPMVVLGSSALQR ASGSHPFSQVLKEAKKPMVVLGSSALQRND AKKPMVVLGSSALQRNDGAAILAAVSSIAQ K K P Q R N 1 1 0 0 0 1 0 1 0 0 2 1 1 0 1 2 0 0 0 2 0 0 13 1 1384.7861 P28331;B4DJ81 P28331 471 483 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2;3 5.2185E-06 94.122 By MS/MS By matching By MS/MS 2 1 1 0.87238 0.8965 5.4382 4 Median 0.87346 0.89597 6.4572 2 1 Median 0.8558 0.857 NaN 1 0 Median 0.88927 0.94413 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20265000 10027000 10238000 11446000 5650900 5795400 1577000 747360 829680 7241700 3628300 3613400 0 0 0 0 0 0 0 0 0 18091 2165 18855 94230;94231;94232;94233 95913;95914;95915 95913 3 KPNEGADGQWK AIQNKDRAKVEFNIRKPNEGADGQWKKGFV FNIRKPNEGADGQWKKGFVLHKSKSEEAHA R K P W K K 1 0 1 1 0 1 1 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 11 1 1228.5836 Q8NC51 Q8NC51 310 320 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.020132 30.55 By matching By MS/MS 1 1 0.90902 0.8751 14.762 2 Median 0.80283 0.78836 NaN 1 0 Median 1.0293 0.97138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 612970 323080 289890 182550 112860 69694 430420 210220 220200 0 0 0 0 0 0 0 0 0 0 0 0 18092 3414 18856 94234;94235 95916 95916 0 KPNFEVGSSR GHESDNLLFVQITGKKPNFEVGSSRQLKLS QITGKKPNFEVGSSRQLKLSITKKSSPSGS K K P S R Q 0 1 1 0 0 0 1 1 0 0 0 1 0 1 1 2 0 0 0 1 0 0 10 1 1119.5673 H3BUG4;H3BPG7;H3BV90;H3BT65;Q6FI81 H3BUG4 163 172 CIAPIN1 Anamorsin yes no 2 0.036237 35.511 By MS/MS By matching 1 1 0.83984 0.8694 0.28449 2 Median NaN NaN NaN 0 0 Median 0.93389 0.87115 NaN 1 0 Median 0.75526 0.86765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 982840 527080 455760 0 0 0 757350 394900 362450 225490 132180 93310 0 0 0 0 0 0 0 0 0 18093 1222 18857 94236;94237 95917 95917 1 KPNPLANSNTSGYSESK EQINEDTGTARAIQRKPNPLANSNTSGYSE NPLANSNTSGYSESKKDDARAQLMKEDPEL R K P S K K 1 0 3 0 0 0 1 1 0 0 1 2 0 0 2 4 1 0 1 0 0 0 17 1 1792.8592 Q14669 Q14669 799 815 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.0016003 27.149 By MS/MS By MS/MS By MS/MS 1 1 1 0.55652 0.63789 17.232 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55652 0.63789 NaN 1 0 Median 0.5389 0.50221 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78633 0.7017 NaN 1 0 Median 3320500 2040100 1280400 0 0 0 0 0 0 1845300 1212800 632440 676740 449690 227050 0 0 0 798500 377590 420910 18094 2886 18858 94238;94239;94240 95918;95919;95920 95920 3 KPNVDADDVR TTILDDAKIYSSHAKKPNVDADDVRLAIQC SSHAKKPNVDADDVRLAIQCRADQSFTSPP K K P V R L 1 1 1 3 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 1 1127.5571 Q9HBM6 Q9HBM6 63 72 TAF9B Transcription initiation factor TFIID subunit 9B yes yes 2 0.0284 37.191 By matching By matching By MS/MS 1 2 2 0.97018 1.0479 14.965 5 Median NaN NaN NaN 0 0 Median 0.97018 0.92159 NaN 1 0 Median 0.89886 0.95474 16.264 2 0 Median 1.2552 1.1473 12.819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2440600 1213400 1227200 0 0 0 265070 127020 138050 1256900 647840 609050 918640 438510 480130 0 0 0 0 0 0 18095 4022 18859 94241;94242;94243;94244;94245 95921 95921 1 KPPEADMNIFEDIGDYVPSTTK NKKLKKKDKGKLEEKKPPEADMNIFEDIGD NIFEDIGDYVPSTTKTPRDKERERYRERER K K P T K T 1 0 1 3 0 0 2 1 0 2 0 2 1 1 3 1 2 0 1 1 0 0 22 1 2466.1625 Q13123 Q13123 310 331 IK Protein Red yes yes 3 5.6682E-10 60.278 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 0.71209 0.77675 11.548 6 Median 0.7804 0.80987 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65957 0.76353 NaN 1 0 Median 0.85803 0.79227 NaN 1 0 Median 0.63714 0.69704 17.739 2 0 Median 0.71853 0.65548 NaN 1 0 Median 12766000 6341600 6424700 918170 568540 349630 0 0 0 887340 479220 408120 113730 62250 51485 10647000 5121200 5526100 199720 110390 89334 18096 2787 18860 94246;94247;94248;94249;94250;94251 95922;95923;95924;95925 95924 4 KPPGAQLGFNIR NNELTQFLPRTITLKKPPGAQLGFNIRGGK TLKKPPGAQLGFNIRGGKASQLGIFISKVI K K P I R G 1 1 1 0 0 1 0 2 0 1 1 1 0 1 2 0 0 0 0 0 0 0 12 1 1296.7303 Q5EBL8 Q5EBL8 52 63 PDZD11 PDZ domain-containing protein 11 yes yes 2;3 0.00014613 68.355 By MS/MS By matching By MS/MS 2 1 2 0.59939 0.62369 23.87 5 Median 0.67024 0.66425 22.813 2 0 Median 1.1067 0.97634 NaN 1 0 Median 0.5682 0.59174 7.4384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21371000 12606000 8765500 11004000 6316700 4687200 1703800 1124900 578940 8663400 5164100 3499300 0 0 0 0 0 0 0 0 0 18097 3045 18861 94252;94253;94254;94255;94256 95926;95927;95928 95927 3 KPPGPPPGPPPPQVVQMYGR LPLLGHGVPRLPPGRKPPGPPPGPPPPQVV PPGPPPPQVVQMYGRKVGFALDLPPRRRDE R K P G R K 0 1 0 0 0 2 0 3 0 0 0 1 1 0 9 0 0 0 1 2 0 0 20 1 2095.1037 Q9Y2W2 Q9Y2W2 198 217 WBP11 WW domain-binding protein 11 yes yes 3 0.00059652 45.094 By MS/MS 1 0.37205 0.39529 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37205 0.39529 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2370700 1676500 694240 0 0 0 0 0 0 2370700 1676500 694240 0 0 0 0 0 0 0 0 0 18098 4394 18862 94257 95929 95929 1 KPPKPQLMANYYNK FKAVEDIHGLFSLSKKPPKPQLMANYYNKV KKPPKPQLMANYYNKVSTVFWKSGNALFHA K K P N K V 1 0 2 0 0 1 0 0 0 0 1 3 1 0 3 0 0 0 2 0 0 0 14 2 1690.8865 Q14152 Q14152 265 278 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 2.2261E-06 93.011 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.65687 0.74338 18.964 6 Median 0.65212 0.71398 NaN 1 0 Median 0.85666 0.89528 7.3829 2 0 Median 0.63003 0.74338 4.3441 2 0 Median 0.53316 0.54037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52477000 31492000 20986000 18259000 10663000 7596100 25140000 15666000 9474200 7521400 4195600 3325700 1557200 967330 589910 0 0 0 0 0 0 18099 2860 18863 94258;94259;94260;94261;94262;94263 95930;95931;95932;95933;95934;95935 95932 6 KPPLAAALGEAEPPGPVDATDLPK TTHPPLPPAHPPPDRKPPLAAALGEAEPPG EAEPPGPVDATDLPKVQIPPPAHPAPVHQP R K P P K V 5 0 0 2 0 0 2 2 0 0 3 2 0 0 6 0 1 0 0 1 0 0 24 1 2353.2529 O75909 O75909 375 398 CCNK Cyclin-K yes yes 3 6.2586E-08 42.322 By MS/MS By matching 1 1 0.30105 0.30592 1.4022 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27085 0.3029 NaN 1 0 Median 0.33462 0.30897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8936200 6778100 2158200 0 0 0 0 0 0 8526300 6477800 2048500 409980 300270 109710 0 0 0 0 0 0 18100 1704 18864 94264;94265 95936 95936 1 KPPLLDRPGEGSYNR HPSDGYNRLVNIVPKKPPLLDRPGEGSYNR KPPLLDRPGEGSYNRYYSHVDYRDYDEGRS K K P N R Y 0 2 1 1 0 0 1 2 0 0 2 1 0 0 3 1 0 0 1 0 0 0 15 2 1697.8849 F8W0Q9;Q8NEY8;F8VPY7;F8VWU8;F8VRK2 F8W0Q9 55 69 PPHLN1 Periphilin-1 yes no 3 0.00022997 46.964 By matching By MS/MS By MS/MS By MS/MS 1 1 4 3 0.63855 0.66258 68.956 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63855 0.74732 NaN 1 0 Median 0.66863 0.71233 NaN 1 0 Median 0.60639 0.67027 102.98 4 0 Median 0.61308 0.64635 12.033 3 0 Median 49491000 29474000 20016000 0 0 0 0 0 0 3697400 1851500 1845900 2939000 1734500 1204500 35256000 21282000 13974000 7598600 4606400 2992200 18101 1080 18865 94266;94267;94268;94269;94270;94271;94272;94273;94274 95937;95938;95939;95940;95941;95942 95937 6 KPPLLNNADSVQAK SNRFYTLIPHDFGMKKPPLLNNADSVQAKV KKPPLLNNADSVQAKVEMLDNLLDIEVAYS K K P A K V 2 0 2 1 0 1 0 0 0 0 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1493.8202 P09874 P09874 748 761 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 4.3866E-32 208.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 10 16 4 11 0.84983 0.8226 14.82 47 Median 0.68094 0.71346 18.411 4 1 Median 0.88961 0.83673 3.6269 3 1 Median 0.71932 0.79867 6.4059 10 1 Median 0.90022 0.8497 12.588 15 2 Median 0.8314 0.93454 22.716 4 1 Linear 0.89331 0.80054 17.226 11 0 Median 1372400000 741270000 631090000 24144000 14288000 9855500 29964000 15454000 14510000 586820000 334380000 252440000 636620000 325800000 310820000 36043000 20555000 15488000 58777000 30795000 27983000 18102 1922 18866 94275;94276;94277;94278;94279;94280;94281;94282;94283;94284;94285;94286;94287;94288;94289;94290;94291;94292;94293;94294;94295;94296;94297;94298;94299;94300;94301;94302;94303;94304;94305;94306;94307;94308;94309;94310;94311;94312;94313;94314;94315;94316;94317;94318;94319;94320;94321;94322 95943;95944;95945;95946;95947;95948;95949;95950;95951;95952;95953;95954;95955;95956;95957;95958;95959;95960;95961;95962;95963;95964;95965;95966;95967;95968;95969;95970;95971;95972;95973;95974;95975;95976;95977;95978;95979;95980;95981;95982;95983;95984;95985;95986;95987;95988;95989;95990;95991;95992;95993;95994;95995;95996;95997;95998;95999;96000;96001;96002;96003;96004;96005;96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021 95996 79 KPPPNLFK FEDFTGGIAEWYELKKPPPNLFKIIQKALQ AEWYELKKPPPNLFKIIQKALQKGSLLGCS K K P F K I 0 0 1 0 0 0 0 0 0 0 1 2 0 1 3 0 0 0 0 0 0 0 8 1 939.55419 P17655 P17655 219 226 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.029793 46.016 By MS/MS 1 0.86787 0.83968 NaN 1 Median NaN NaN NaN 0 0 Median 0.86787 0.83968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3134100 1596500 1537500 0 0 0 3134100 1596500 1537500 0 0 0 0 0 0 0 0 0 0 0 0 18103 2045 18867 94323 96022 96022 1 KPPPSKEELLK TNPPLIQEKPAKTSKKPPPSKEELLKLTET KTSKKPPPSKEELLKLTETVVTEYLNSGNA K K P L K L 0 0 0 0 0 0 2 0 0 0 2 3 0 0 3 1 0 0 0 0 0 0 11 2 1264.7391 P78344;D3DQV9;H0Y3P2;E9PKF8 P78344 536 546 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.015278 26.707 By matching By MS/MS By matching 1 2 1 0.65909 0.65762 14.043 4 Median 0.64394 0.67502 NaN 1 0 Median 0.65168 0.62733 2.9791 2 0 Median 0.69035 0.84213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1970400 1057600 912800 274700 157530 117170 1571000 825050 745990 124700 75057 49648 0 0 0 0 0 0 0 0 0 18104 2639 18868 94324;94325;94326;94327 96023;96024;96025 96025 3 KPPPVPALPSK TRPVKKVSKEEKKSKKPPPVPALPSKLPTF KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ K K P S K L 1 0 0 0 0 0 0 0 0 0 1 2 0 0 5 1 0 0 0 1 0 0 11 1 1129.6859 Q14258;A0A3B3IUA7 Q14258 392 402 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.059226 27.329 By matching By MS/MS 1 1 0.65359 0.60909 8.4335 2 Median NaN NaN NaN 0 0 Median 0.61009 0.57383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70018 0.64652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2315600 1396200 919410 0 0 0 1168600 646150 522440 0 0 0 1147000 750010 396970 0 0 0 0 0 0 18105 2870 18869 94328;94329 96026 96026 1 KPPTDEELKETIK SEDSSDDEPLIKKLKKPPTDEELKETIKKL LKKPPTDEELKETIKKLLASANLEEVTMKQ K K P I K K 0 0 0 1 0 0 3 0 0 1 1 3 0 0 2 0 2 0 0 0 0 0 13 2 1526.8192 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 318 330 DEK Protein DEK yes no 3 2.6102E-07 114.64 By MS/MS By MS/MS 1 3 0.73182 0.70346 8.7984 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57172 0.6706 NaN 1 0 Median 0.77011 0.73792 9.217 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68405000 40471000 27935000 0 0 0 0 0 0 36538000 22361000 14177000 31867000 18110000 13758000 0 0 0 0 0 0 18106 1166 18870 94330;94331;94332;94333 96027;96028;96029;96030;96031;96032;96033;96034;96035 96027 9 KPPTGPLPPSKEPLK VCPGWSPPAKSLAPKKPPTGPLPPSKEPLK KPPTGPLPPSKEPLKEKLIPGPLSPVARGG K K P L K E 0 0 0 0 0 0 1 1 0 0 2 3 0 0 6 1 1 0 0 0 0 0 15 2 1584.9239 P48634 P48634 1196 1210 PRRC2A Protein PRRC2A yes yes 3 0.06089 40.278 By MS/MS 1 0.47199 0.5428 NaN 1 Median NaN NaN NaN 0 0 Median 0.47199 0.5428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 876160 584760 291400 0 0 0 876160 584760 291400 0 0 0 0 0 0 0 0 0 0 0 0 18107 2363 18871 94334 96036 96036 1 KPPVFLK DVILTGTPPGVGVFRKPPVFLKKGDEVQCE PPGVGVFRKPPVFLKKGDEVQCEIEELGVI R K P L K K 0 0 0 0 0 0 0 0 0 0 1 2 0 1 2 0 0 0 0 1 0 0 7 1 827.52691 Q6P2I3;Q96GK7 Q96GK7 288 294 FAHD2B;FAHD2A Fumarylacetoacetate hydrolase domain-containing protein 2B;Fumarylacetoacetate hydrolase domain-containing protein 2A no no 2 0.065124 42.229 By MS/MS 2 0.72781 0.69531 5.5642 2 Median 0.72781 0.69531 5.5642 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5328800 3087600 2241200 5328800 3087600 2241200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18108 3658;3156 18872 94335;94336 96037 96037 1 KPPVPLDWAEVQSQGEETNASDQQNEPQLGLK DIRYLLTMDKLWRKRKPPVPLDWAEVQSQG TNASDQQNEPQLGLKDQQVLDVKSYARLFS R K P L K D 2 0 2 2 0 5 4 2 0 0 3 2 0 0 4 2 1 1 0 2 0 0 32 1 3531.7118 Q9UBT2;K7ESK7 Q9UBT2 277 308 UBA2 SUMO-activating enzyme subunit 2 yes no 3 0.00052309 26.493 By MS/MS 1 0.39875 0.41091 NaN 1 Median 0.39875 0.41091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5434100 3498000 1936000 5434100 3498000 1936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18109 4247 18873 94337 96038 96038 1 KPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVK DIRYLLTMDKLWRKRKPPVPLDWAEVQSQG EPQLGLKDQQVLDVKSYARLFSKSIETLRV R K P V K S 2 0 2 4 0 7 4 2 0 0 4 3 0 0 4 2 1 1 0 4 0 0 40 2 4457.1987 Q9UBT2;K7ESK7 Q9UBT2 277 316 UBA2 SUMO-activating enzyme subunit 2 yes no 4 0.053946 10.15 By MS/MS 1 0.46496 0.4543 NaN 1 Median 0.46496 0.4543 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2817900 2270000 547930 2817900 2270000 547930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18110 4247 18874 94338 96039 96039 1 KPQLDVTR EKKNQLELLRVMNSKKPQLDVTRATNKQMR LRVMNSKKPQLDVTRATNKQMREEDQEEAA K K P T R A 0 1 0 1 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 1 955.54508 Q15050 Q15050 279 286 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.021096 50.607 By MS/MS By matching 2 1 0.98269 0.93428 10.593 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95903 1.0122 11.323 2 0 Median 0.98269 0.89758 NaN 1 0 Median 7649200 3740800 3908400 0 0 0 0 0 0 0 0 0 0 0 0 6394500 3080800 3313700 1254700 659950 594720 18111 2920 18875 94339;94340;94341 96040 96040 1 KPQLELAMVPHYGGINR DEEEEEEDEEDEEERKPQLELAMVPHYGGI QLELAMVPHYGGINRVRVSWLGEEPVAGVW R K P N R V 1 1 1 0 0 1 1 2 1 1 2 1 1 0 2 0 0 0 1 1 0 0 17 1 1922.0196 Q9BQ67;M0QX71 Q9BQ67 138 154 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 3 0.04127 19.39 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 0.62928 0.65457 19.857 6 Median 0.44807 0.44927 NaN 1 0 Median 0.81982 0.74593 NaN 1 0 Median 0.57626 0.61241 22.837 2 0 Median 0.71589 0.67178 NaN 1 0 Median 0.61389 0.63781 NaN 1 0 Median NaN NaN NaN 0 0 Median 14465000 8981000 5483600 3033200 1923400 1109800 394170 190620 203550 7932600 4873900 3058700 677710 377340 300370 2427000 1615800 811180 0 0 0 18112 3784 18876 94342;94343;94344;94345;94346;94347 96041 96041 0 KPQLTQEELEAK TNPAVAPPCVVVEEKKPQLTQEELEAKQAK EEKKPQLTQEELEAKQAKQKLEDRLAAAAR K K P A K Q 1 0 0 0 0 2 3 0 0 0 2 2 0 0 1 0 1 0 0 0 0 0 12 1 1412.7511 Q12872 Q12872 638 649 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 3 0.00059278 73.082 By MS/MS By MS/MS 1 1 0.81434 0.85102 28.111 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90552 1.0382 NaN 1 1 Median 0.73235 0.69761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5574300 2872600 2701800 0 0 0 0 0 0 4501300 2235300 2266000 1073000 637310 435720 0 0 0 0 0 0 18113 2765 18877 94348;94349 96042;96043 96042 2 KPRPPPALGPEETSASAGLPK ______________________________ ALGPEETSASAGLPKKGEKEQQEAIEHIDE K K P P K K 3 1 0 0 0 0 2 2 0 0 2 2 0 0 6 2 1 0 0 0 0 0 21 2 2099.1375 Q01105 Q01105 15 35 SET Protein SET yes yes 3 9.4194E-05 36.523 By MS/MS By MS/MS By matching 1 1 1 0.39276 0.44033 13.23 3 Median NaN NaN NaN 0 0 Median 0.40705 0.48656 NaN 1 0 Median 0.39276 0.44033 NaN 1 0 Median 0.37425 0.37436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11864000 7518500 4345500 0 0 0 2421700 1201900 1219800 8349200 5552200 2797000 1093100 764380 328680 0 0 0 0 0 0 18114 2683 18878 94350;94351;94352 96044;96045 96044 2 KPRPVSQLVAQQVTQQFVPPTQSK FKCMMCDVRKGTSTRKPRPVSQLVAQQVTQ AQQVTQQFVPPTQSKKEKKDKVEKEKSEKE R K P S K K 1 1 0 0 0 6 0 0 0 0 1 2 0 1 4 2 2 0 0 4 0 0 24 2 2690.4868 Q8IY57 Q8IY57 52 75 YAF2 YY1-associated factor 2 yes yes 3 1.0146E-05 37.896 By MS/MS By MS/MS 1 1 0.48028 0.46154 21.97 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48151 0.53912 NaN 1 0 Median 0.47904 0.39513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12281000 8483300 3797400 0 0 0 0 0 0 11555000 8051200 3503600 725920 432100 293810 0 0 0 0 0 0 18115 3337 18879 94353;94354 96046;96047 96046 2 KPSDSVHITNDDER EKNKEAIYSGYIRNRKPSDSVHITNDDERF RKPSDSVHITNDDERFLHHLIIEEKEKDSF R K P E R F 0 1 1 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 14 1 1611.7489 A6NHR9 A6NHR9 291 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0049191 27.029 By MS/MS By MS/MS 1 2 0.74011 0.88694 21.565 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74011 0.88694 NaN 1 0 Median 0.82755 0.78474 28.813 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6348900 3426200 2922800 0 0 0 0 0 0 4635900 2558900 2076900 1713000 867230 845820 0 0 0 0 0 0 18116 518 18880 94355;94356;94357 96048;96049;96050 96049 3 KPSISITTESLK GRKRRWGASTATTQKKPSISITTESLKSLI TQKKPSISITTESLKSLIPDIKPLAGQEAV K K P L K S 0 0 0 0 0 0 1 0 0 2 1 2 0 0 1 3 2 0 0 0 0 0 12 1 1302.7395 S4R3H4;E7EQT4;Q9UKV3;G3V3B0;G3V3T3 S4R3H4 803 814 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2;3 4.5025E-06 131.17 By MS/MS By matching By MS/MS By MS/MS 3 1 5 5 0.91028 0.92773 9.0883 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77448 0.87151 3.7398 3 0 Median 1.111 1.0854 NaN 1 0 Median 0.85295 0.95086 7.3151 5 2 Median 1.0405 0.93587 11.02 5 1 Median 129650000 69284000 60365000 0 0 0 0 0 0 20932000 11927000 9004600 397250 220440 176810 86043000 46586000 39457000 22277000 10550000 11726000 18117 4560 18881 94358;94359;94360;94361;94362;94363;94364;94365;94366;94367;94368;94369;94370;94371 96051;96052;96053;96054;96055;96056;96057;96058;96059;96060;96061;96062;96063;96064;96065 96057 15 KPSLLYEGFESPTMASVPALQLTPANPPPPEVSNPK LGLGPEAAAPGKRIRKPSLLYEGFESPTMA LTPANPPPPEVSNPKKPGRVTNQLQYLHKV R K P P K K 3 0 2 0 0 1 3 1 0 0 4 2 1 1 9 4 2 0 1 2 0 0 36 1 3802.9492 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0Y799;A0A140T9X8;E9PKQ9 H0Y6K2 41 76 BRD2 Bromodomain-containing protein 2 yes no 3 0.06628 4.035 By MS/MS 1 0.19497 0.22314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19497 0.22314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2060400 1564500 495920 0 0 0 0 0 0 2060400 1564500 495920 0 0 0 0 0 0 0 0 0 18118 279 18882 94372 96066;96067 96066 2 KPTETQELVQQVLSLATQDSDNPDLR VQLQLLTAIVKLFLKKPTETQELVQQVLSL VLSLATQDSDNPDLRDRGYIYWRLLSTDPV K K P L R D 1 1 1 3 0 4 2 0 0 0 4 1 0 0 2 2 3 0 0 2 0 0 26 1 2924.4727 Q10567;C9J1E7 Q10567 495 520 AP1B1 AP-1 complex subunit beta-1 yes no 3 1.1536E-13 59.691 By MS/MS 1 0.80782 0.80669 NaN 1 Median NaN NaN NaN 0 0 Median 0.80782 0.80669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797500 1557300 1240200 0 0 0 2797500 1557300 1240200 0 0 0 0 0 0 0 0 0 0 0 0 18119 2752 18883 94373 96068 96068 1 KPTFMDEEVQSILTK LGTHFGAESGSPETKKPTFMDEEVQSILTK KPTFMDEEVQSILTKMTGLNLQKTFKPAIQ K K P T K M 0 0 0 1 0 1 2 0 0 1 1 2 1 1 1 1 2 0 0 1 0 0 15 1 1764.8968 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3;C9J5D8 G5E9W7 26 40 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3 0.048328 11.279 By MS/MS By matching By matching By matching 1 1 1 1 1.0429 0.95235 13.71 4 Median 1.0069 0.94288 NaN 1 0 Median 1.3713 1.2358 NaN 1 0 Median 0.87519 0.92067 NaN 1 0 Median 1.0803 0.96192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4944600 2475500 2469100 2391300 1155400 1235900 858050 477670 380380 1275100 654820 620310 420140 187580 232560 0 0 0 0 0 0 18120 1130 18884 94374;94375;94376;94377 96069 96069 1 KPTHSQEPQGPEAMER TEEDPSLPALLTQPRKPTHSQEPQGPEAME PTHSQEPQGPEAMERRVQAVREIHPFIDDY R K P E R R 1 1 0 0 0 2 3 1 1 0 0 1 1 0 3 1 1 0 0 0 0 0 16 1 1820.8475 O95602 O95602 1485 1500 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3;4 0.067687 6.4166 By MS/MS By matching 2 1 0.50279 0.59584 10.794 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50061 0.59406 0.42384 2 0 Median 0.74181 0.71614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2018700 1348700 670010 0 0 0 0 0 0 1831600 1260400 571210 187050 88250 98803 0 0 0 0 0 0 18121 1781 18885 94378;94379;94380 96070;96071 96070 2 KPTLDKPSPETFVK SVLPYFVATKLAKIRKPTLDKPSPETFVKS RKPTLDKPSPETFVKSAIKTVGLQSRTNGY R K P V K S 0 0 0 1 0 0 1 0 0 0 1 3 0 1 3 1 2 0 0 1 0 0 14 2 1585.8716 Q53GQ0;A0A1B0GV93 Q53GQ0 244 257 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 3 6.456E-09 107.74 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 0.69981 0.71283 21.853 6 Median 0.6461 0.67492 NaN 1 0 Median 0.63249 0.62356 26.652 2 0 Median 0.53615 0.60495 NaN 1 0 Median 0.9404 0.89023 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0452 0.89706 NaN 1 0 Median 72433000 43461000 28972000 43118000 26649000 16469000 23855000 13261000 10594000 2851900 2074100 777800 1791800 1076400 715390 0 0 0 816400 400310 416090 18122 3030 18886 94381;94382;94383;94384;94385;94386 96072;96073;96074;96075;96076;96077 96077 6 KPTPSLLI EPKKKKYAKEAWPGKKPTPSLLI_______ KEAWPGKKPTPSLLI_______________ K K P L I - 0 0 0 0 0 0 0 0 0 1 2 1 0 0 2 1 1 0 0 0 0 0 8 1 867.54295 Q12972 Q12972 344 351 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 2 0.0099427 68.915 By MS/MS 2 0.77258 0.78502 2.3597 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77258 0.78502 2.3597 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13110000 7648000 5462400 0 0 0 0 0 0 13110000 7648000 5462400 0 0 0 0 0 0 0 0 0 18123 2775 18887 94387;94388 96078;96079 96079 2 KPTQGNPLPPQIFNGDR EEQRQWMYKNVPPEKKPTQGNPLPPQIFNG TQGNPLPPQIFNGDRYCGDYDSFFESKESN K K P D R Y 0 1 2 1 0 2 0 2 0 1 1 1 0 1 4 0 1 0 0 0 0 0 17 1 1877.9748 Q9UJC5 Q9UJC5 58 74 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 3 0.0020852 43.454 By MS/MS 1 0.56189 0.58391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56189 0.58391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7127000 4665500 2461500 0 0 0 0 0 0 7127000 4665500 2461500 0 0 0 0 0 0 0 0 0 18124 4296 18888 94389 96080 96080 1 KPTSALDEPVSHWRPR LLTGESDTQQIEAEKKPTSALDEPVSHWRP PTSALDEPVSHWRPRLALNVMADNFVFDGS K K P P R L 1 2 0 1 0 0 1 0 1 0 1 1 0 0 3 2 1 1 0 1 0 0 16 2 1874.9751 Q96KA5;G5E9Z2 Q96KA5 158 173 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes no 3;4 5.4156E-09 131.24 By MS/MS By MS/MS By matching 3 3 1 0.64119 0.62711 26.013 7 Median 0.57598 0.58768 14.264 3 0 Median 0.74822 0.72151 34.317 3 0 Median 0.64119 0.72946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 165200000 97208000 67996000 28757000 17768000 10990000 132940000 77361000 55577000 3508400 2079000 1429500 0 0 0 0 0 0 0 0 0 18125 3691 18889 94390;94391;94392;94393;94394;94395;94396 96081;96082;96083;96084;96085;96086;96087;96088;96089;96090 96088 10 KPTSQIPETK QVARFCLFHSFFVTKKPTSQIPETKHPFSF FFVTKKPTSQIPETKHPFSFPLENQAREAV K K P T K H 0 0 0 0 0 1 1 0 0 1 0 2 0 0 2 1 2 0 0 0 0 0 10 1 1127.6186 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 489 498 MYBBP1A Myb-binding protein 1A yes no 2 0.060755 30.254 By MS/MS By matching By matching 1 1 1 0.90648 0.91126 5.4323 3 Plateau NaN NaN NaN 0 0 Median 0.97801 0.9241 NaN 1 0 Median 0.76941 0.87206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90648 0.82903 NaN 1 0 Median 1146800 575780 571020 0 0 0 602890 283660 319230 410170 219070 191090 0 0 0 0 0 0 133740 73044 60699 18126 3789 18890 94397;94398;94399 96091 96091 1 KPVAGALDVSFNK QGWQADSTTRMVLPRKPVAGALDVSFNKFI PRKPVAGALDVSFNKFIPLSEPAPVPPIPN R K P N K F 2 0 1 1 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 2 0 0 13 1 1344.7402 Q99627;E9PGT6;H7C3S9 Q99627 166 178 COPS8 COP9 signalosome complex subunit 8 yes no 2;3 3.2844E-06 145.09 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.0277 0.96846 26.092 8 Median 0.58509 0.59348 11.864 2 0 Median 1.0379 0.93366 0.03421 2 0 Median 1.0209 1.0173 1.819 2 0 Median 1.222 1.1001 6.0257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136310000 75114000 61198000 94690000 55614000 39076000 17027000 7617900 9408600 18892000 9251200 9641200 5702600 2630100 3072500 0 0 0 0 0 0 18127 927 18891 94400;94401;94402;94403;94404;94405;94406;94407 96092;96093;96094;96095;96096;96097;96098;96099;96100;96101;96102;96103;96104 96098 12 KPVEELTEEEK SPEFKDPLIDKEYYRKPVEELTEEEKYVRE EYYRKPVEELTEEEKYVRELKKTQLIKAAP R K P E K Y 0 0 0 0 0 0 5 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1329.6664 J3QLS3;Q9Y2R9;J3QKW2 J3QLS3 82 92 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 0.014604 38.567 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1.0658 1.0407 41.269 6 Median 0.92933 0.9461 NaN 1 0 Median 1.2222 1.1187 NaN 1 0 Median 0.8471 0.96805 NaN 1 0 Median 0.48742 0.43496 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4837 1.2877 17.071 2 0 Median 6813400 3219000 3594400 1528300 757080 771210 2419800 990170 1429700 1151300 626740 524580 487240 353750 133490 0 0 0 1226700 491210 735460 18128 1341 18892 94408;94409;94410;94411;94412;94413 96105;96106;96107 96105 3 KPVEELTEEEKYVR SPEFKDPLIDKEYYRKPVEELTEEEKYVRE RKPVEELTEEEKYVRELKKTQLIKAAPAGK R K P V R E 0 1 0 0 0 0 5 0 0 0 1 2 0 0 1 0 1 0 1 2 0 0 14 2 1747.8992 J3QLS3;Q9Y2R9;J3QKW2 J3QLS3 82 95 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 1.006E-05 136.17 By MS/MS By MS/MS 1 1 0.84112 0.80818 21.92 2 Median 0.65002 0.69213 NaN 1 0 Median 1.0884 0.94367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19839000 11537000 8301400 12439000 8083000 4356200 7399700 3454400 3945200 0 0 0 0 0 0 0 0 0 0 0 0 18129 1341 18893 94414;94415 96108;96109;96110;96111 96111 4 KPVGEVHSQFSTGHANSPCTIIIGK QRSMNKRQRRPATPKKPVGEVHSQFSTGHA STGHANSPCTIIIGKAHTEKVHVPARPYRV K K P G K A 1 0 1 0 1 1 1 3 2 3 0 2 0 1 2 3 2 0 0 2 0 0 25 1 2663.349 P46013 P46013 697 721 MKI67 Antigen KI-67 yes yes 4 0.0021598 24.896 By MS/MS 1 0.81413 0.92215 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81413 0.92215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17206000 10375000 6831200 0 0 0 0 0 0 17206000 10375000 6831200 0 0 0 0 0 0 0 0 0 18130 2335 18894 94416 96112;96113;96114 96112 3 KPVILEVTPGGFDQINPATNR GRRYNCYKHHWSDSRKPVILEVTPGGFDQI VTPGGFDQINPATNRVLCSYDYRNIEGFVD R K P N R V 1 1 2 1 0 1 1 2 0 2 1 1 0 1 3 0 2 0 0 2 0 0 21 1 2265.2117 O75165;A0A3B3IRM0 O75165 126 146 DNAJC13 DnaJ homolog subfamily C member 13 yes no 3 2.195E-14 92.098 By MS/MS By MS/MS By matching 1 1 1 1.0153 1.0489 51.042 3 Median 0.46702 0.47091 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0153 1.216 NaN 1 1 Median 1.0865 1.0489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10631000 6425200 4206000 6055300 4130100 1925100 0 0 0 4344700 2180700 2164100 231270 114440 116830 0 0 0 0 0 0 18131 1653 18895 94417;94418;94419 96115;96116 96115 2 KPVIVFVPSR MAKPVYHAITKHSPKKPVIVFVPSRKQTRL KHSPKKPVIVFVPSRKQTRLTAIDILTTCA K K P S R K 0 1 0 0 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 3 0 0 10 1 1140.7019 O75643 O75643 1557 1566 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00065274 90.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 2 2 0.81571 0.82615 10.873 14 Median 0.87217 0.89042 6.566 2 0 Median 0.9188 0.86965 6.6184 2 0 Median 0.67413 0.79436 4.9099 2 0 Median 0.84931 0.80544 14.694 4 0 Median 0.69954 0.78357 12.53 2 0 Median 0.84605 0.74483 12.67 2 0 Median 116330000 63355000 52975000 18655000 9429700 9225300 11184000 5682400 5501800 51839000 30001000 21838000 15792000 7967900 7823800 13737000 7735000 6001600 5123600 2539200 2584400 18132 1688 18896 94420;94421;94422;94423;94424;94425;94426;94427;94428;94429;94430;94431;94432;94433 96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127;96128;96129;96130;96131;96132;96133 96122 16 KPVIVFVPSRK MAKPVYHAITKHSPKKPVIVFVPSRKQTRL HSPKKPVIVFVPSRKQTRLTAIDILTTCAA K K P R K Q 0 1 0 0 0 0 0 0 0 1 0 2 0 1 2 1 0 0 0 3 0 0 11 2 1268.7969 O75643 O75643 1557 1567 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.00063835 56.205 By MS/MS By matching By matching 1 1 1 0.7604 0.93164 5.8591 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70516 0.93164 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7604 0.89393 NaN 1 0 Median 0.97811 1.0035 NaN 1 0 Median 14108000 7907700 6200300 0 0 0 0 0 0 9262400 5476000 3786400 0 0 0 3786600 1870500 1916100 1059000 561160 497860 18133 1688 18897 94434;94435;94436 96134 96134 1 KPVIYLSAAAR YEDFVVDGFNVLYNKKPVIYLSAAARPGLG LYNKKPVIYLSAAARPGLGQYLCNQLGLPF K K P A R P 3 1 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 11 1 1187.7026 Q6P996;H3BND4;Q86XE2;J3KNK7;H3BNL6;Q6P474 Q6P996 173 183 PDXDC1;PDXDC2P Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2 yes no 2 0.010549 42.395 By MS/MS By MS/MS 1 1 0.77766 0.7861 9.8697 2 Median 0.82409 0.84292 NaN 1 0 Median 0.73385 0.73311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4840300 2702400 2137800 2259900 1210800 1049100 2580300 1491700 1088700 0 0 0 0 0 0 0 0 0 0 0 0 18134 3164 18898 94437;94438 96135;96136 96135 2 KPVSSYLR YLPRWFSSVLASCPKKPVSSYLRFSKEQLP VLASCPKKPVSSYLRFSKEQLPIFKAQNPD K K P L R F 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0 1 1 0 0 8 1 948.53927 Q00059;H7BYN3 Q00059 52 59 TFAM Transcription factor A, mitochondrial yes no 2 0.0032891 112.17 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 3 1.1666 0.98565 16.481 11 Median 1.3043 1.3666 NaN 1 0 Median 1.4587 1.3722 NaN 1 0 Median 0.92647 0.98565 NaN 1 0 Median 1.2717 1.079 6.2019 2 0 Median 0.90015 0.9365 2.8726 3 0 Plateau 1.1808 1.0365 13.191 3 0 Plateau 142440000 71478000 70965000 5928800 2697200 3231600 808180 253170 555010 65376000 33836000 31540000 10329000 4771200 5558200 45600000 23271000 22329000 14401000 6650100 7750700 18135 2673 18899 94439;94440;94441;94442;94443;94444;94445;94446;94447;94448;94449 96137;96138;96139;96140;96141;96142;96143 96140 7 KPVTDAENCHLAR LKKENFEVLCKDGTRKPVTDAENCHLARGP TRKPVTDAENCHLARGPNHAVVSRKDKATC R K P A R G 2 1 1 1 1 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 13 1 1509.7358 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 595 607 yes no 3 0.011557 39.219 By MS/MS 1 0.046558 0.046641 NaN 1 Median NaN NaN NaN 0 0 Median 0.046558 0.046641 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1463100 1396400 66636 0 0 0 1463100 1396400 66636 0 0 0 0 0 0 0 0 0 0 0 0 + 18136 769 18900 94450 96144 96144 1 KPVTVSPTTPTSPTEGEAS KPVLDVHAELDRITRKPVTVSPTTPTSPTE VSPTTPTSPTEGEAS_______________ R K P A S - 1 0 0 0 0 0 2 1 0 0 0 1 0 0 4 3 5 0 0 2 0 0 19 1 1884.9317 Q9Y6G9;E9PHI6 Q9Y6G9 505 523 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 1.4961E-07 75.479 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.58893 0.51335 15.105 5 Median 0.41944 0.40267 NaN 1 0 Median 0.54127 0.4647 NaN 1 0 Median 0.58893 0.60013 NaN 1 1 Median 0.61397 0.52494 3.1581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17414000 11293000 6121300 4176400 2864800 1311700 3414200 2261700 1152500 3520800 2341700 1179100 6303000 3825000 2477900 0 0 0 0 0 0 18137 4491 18901 94451;94452;94453;94454;94455 96145;96146;96147;96148;96149;96150;96151 96148 7 KPVVPSVPMASPAPGR SKKFPGSAALVGAVRKPVVPSVPMASPAPG PVVPSVPMASPAPGRLGAMSAAPSQPNSQI R K P G R L 2 1 0 0 0 0 0 1 0 0 0 1 1 0 5 2 0 0 0 3 0 0 16 1 1588.8759 Q9BTC0 Q9BTC0 640 655 DIDO1 Death-inducer obliterator 1 yes yes 3 4.6063E-05 55.011 By MS/MS 2 0.364 0.43633 5.8104 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.364 0.43633 5.8104 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25585000 17620000 7964600 0 0 0 0 0 0 25585000 17620000 7964600 0 0 0 0 0 0 0 0 0 18138 3824 18902;18903 94456;94457 96152;96153 96152 1832 2 KPVVTFQAHDGPVYSMVSTDR SLSSALSSEAKEESKKPVVTFQAHDGPVYS QAHDGPVYSMVSTDRHLLSAGDGEVKAWLW K K P D R H 1 1 0 2 0 1 0 1 1 0 0 1 1 1 2 2 2 0 1 4 0 0 21 1 2333.1474 Q86W42 Q86W42 67 87 THOC6 THO complex subunit 6 homolog yes yes 3 6.0856E-18 104.06 By MS/MS By MS/MS 1 2 0.6649 0.59949 6.2371 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55248 0.59949 NaN 1 0 Median 0.70695 0.6182 8.4562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16106000 8961500 7144100 0 0 0 0 0 0 11535000 6278300 5256800 4570400 2683200 1887300 0 0 0 0 0 0 18139 3290 18904;18905 94458;94459;94460 96154;96155 96154 1706 2 KPWQLQGEVTAQK MNEKIASLEKELLEKKPWQLQGEVTAQKRP EKKPWQLQGEVTAQKRPENSLLEETLHFDH K K P Q K R 1 0 0 0 0 3 1 1 0 0 1 2 0 0 1 0 1 1 0 1 0 0 13 1 1511.8096 O00566;U3KQ48 O00566 382 394 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 2 6.9774E-24 205.07 By MS/MS By MS/MS 1 2 1.0673 1.0789 29.53 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96402 1.0789 NaN 1 0 Median 1.4047 1.2603 39.787 2 1 Median 19743000 8682500 11060000 0 0 0 0 0 0 0 0 0 0 0 0 16388000 7265500 9122500 3354700 1417000 1937700 18140 1471 18906 94461;94462;94463 96156;96157;96158 96156 3 KPWTAVDTSVDGR LAGNEYDLTGLSTVRKPWTAVDTSVDGRKR VRKPWTAVDTSVDGRKRTFYLSVCNPLPYI R K P G R K 1 1 0 2 0 0 0 1 0 0 0 1 0 0 1 1 2 1 0 2 0 0 13 1 1430.7154 P11717 P11717 1104 1116 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2;3 4.7156E-09 113.76 By MS/MS By MS/MS 3 2 0.89963 0.85176 61.046 3 Median 0.93588 0.94189 NaN 1 1 Median 0.55274 0.51572 70.955 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44495000 28826000 15670000 8357400 5703800 2653500 36138000 23122000 13016000 0 0 0 0 0 0 0 0 0 0 0 0 18141 1969 18907 94464;94465;94466;94467;94468 96159;96160;96161;96162;96163;96164;96165 96159 7 KPYGVLYK NATVTKVLKDVYALKKPYGVLYKKKNITRP KDVYALKKPYGVLYKKKNITRPFEDQTSLE K K P Y K K 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 2 1 0 0 8 1 966.55385 Q9H7B2;Q5VXN0 Q9H7B2 57 64 RPF2 Ribosome production factor 2 homolog yes no 2 0.013457 64.567 By MS/MS By MS/MS 1 1 1.1937 1.0135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1937 1.0135 NaN 1 0 Median 5054400 2240500 2813900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5054400 2240500 2813900 18142 3980 18908 94469;94470 96166;96167 96167 2 KPYIWEYSR RDEQFYWIIEALGIRKPYIWEYSRLNLNNT EALGIRKPYIWEYSRLNLNNTVLSKRKLTW R K P S R L 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 1 2 0 0 0 9 1 1240.6241 P07814;V9GYZ6 P07814 417 425 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 0.00093769 106.42 By MS/MS By MS/MS By matching 1 2 1 0.99021 0.945 7.6819 4 Median 0.91003 0.90962 NaN 1 0 Median 1.0482 0.9956 11.069 2 0 Median NaN NaN NaN 0 0 Median 1.0048 0.96999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35134000 16236000 18898000 27076000 12527000 14549000 7739400 3544700 4194600 0 0 0 318590 163940 154650 0 0 0 0 0 0 18143 1892 18909 94471;94472;94473;94474 96168;96169;96170;96171 96168 4 KPYPDDENLVEVK PKDRVALSNMNVIDRKPYPDDENLVEVKFA DRKPYPDDENLVEVKFARTPVMSTYLVAFV R K P V K F 0 0 1 2 0 0 2 0 0 0 1 2 0 0 2 0 0 0 1 2 0 0 13 1 1544.7722 E9PLK3;P55786;A6NEC2 E9PLK3 218 230 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2;3 1.1839E-05 88.552 By MS/MS By MS/MS By MS/MS 2 2 1 0.73799 0.7724 12.733 5 Median 0.69241 0.72575 8.8102 2 1 Median 0.8598 0.83215 6.111 2 0 Median 0.55186 0.63113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34174000 19023000 15151000 20780000 11210000 9569900 9649600 5207600 4442000 3744300 2605600 1138700 0 0 0 0 0 0 0 0 0 18144 960 18910 94475;94476;94477;94478;94479 96172;96173;96174;96175;96176;96177;96178;96179;96180 96172 9 KPYRPGIGGFMVR EPGKEETEESKKRKRKPYRPGIGGFMVRQR KRKPYRPGIGGFMVRQRKSHTRTKKGPAAQ R K P V R Q 0 2 0 0 0 0 0 3 0 1 0 1 1 1 2 0 0 0 1 1 0 0 13 2 1476.8024 O14686;A0A3B3ISC8;Q8NEZ4 O14686 1690 1702 KMT2D;KMT2C Histone-lysine N-methyltransferase 2D;Histone-lysine N-methyltransferase 2C no no 3 0.00058479 50.207 By MS/MS 1 0.64319 0.73173 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64319 0.73173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9529500 5643500 3886000 0 0 0 0 0 0 9529500 5643500 3886000 0 0 0 0 0 0 0 0 0 18145 1490;3431 18911 94480 96181 96181 1 KQAEETYENIPGQSK YLLLGNLLSPDNVVRKQAEETYENIPGQSK KQAEETYENIPGQSKITFLLQAIRNTTAAE R K Q S K I 1 0 1 0 0 2 3 1 0 1 0 2 0 0 1 1 1 0 1 0 0 0 15 1 1720.8268 O00410;E7ETV3;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5;C9J875;C9JXE0 O00410 27 41 IPO5 Importin-5 yes no 2;3 3.0335E-07 95.401 By MS/MS By MS/MS 2 2 0.98652 0.97334 10.622 4 Median 1.0029 1.0558 7.4475 2 0 Median 0.97267 0.90379 6.4303 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25735000 12663000 13072000 10257000 4767700 5489200 15478000 7895600 7582400 0 0 0 0 0 0 0 0 0 0 0 0 18146 1460 18912 94481;94482;94483;94484 96182;96183;96184;96185;96186;96187;96188 96185 7 KQAEILQESR IEKMRAEDGENYDIKKQAEILQESRMMIPD NYDIKKQAEILQESRMMIPDCQRRLEAAYL K K Q S R M 1 1 0 0 0 2 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 1 1200.6463 E5RIW3;E5RJD8;O75347 E5RIW3 28 37 TBCA Tubulin-specific chaperone A yes no 3 0.01141 28.708 By MS/MS 1 1.4802 1.3068 NaN 1 Median NaN NaN NaN 0 0 Median 1.4802 1.3068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1687300 565830 1121500 0 0 0 1687300 565830 1121500 0 0 0 0 0 0 0 0 0 0 0 0 18147 852 18913 94485 96189;96190 96189 2 KQAGPASVPLR YDGPRTADGIVSHLKKQAGPASVPLRTEEE SHLKKQAGPASVPLRTEEEFKKFISDKDAS K K Q L R T 2 1 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 11 1 1122.6509 P30101 P30101 130 140 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0076856 46.158 By MS/MS 1 0.91765 0.83879 NaN 1 Median NaN NaN NaN 0 0 Median 0.91765 0.83879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1536700 749250 787480 0 0 0 1536700 749250 787480 0 0 0 0 0 0 0 0 0 0 0 0 18148 2189 18914 94486 96191 96191 1 KQALEQYEEVKK LQEAMEQLEQLELERKQALEQYEEVKKKLE LERKQALEQYEEVKKKLEMATNKTKSWKDK R K Q K K K 1 0 0 0 0 2 3 0 0 0 1 3 0 0 0 0 0 0 1 1 0 0 12 2 1491.7933 Q9UH65;E7EMB1 Q9UH65 511 522 SWAP70 Switch-associated protein 70 yes no 3 0.0020354 39.016 By MS/MS By matching 1 1 1.6834 1.7736 39.937 2 Median NaN NaN NaN 0 0 Median 1.3927 1.3372 NaN 1 0 Median 2.0346 2.3523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7099400 2435200 4664200 0 0 0 5358700 1808500 3550300 1740600 626680 1113900 0 0 0 0 0 0 0 0 0 18149 4270 18915 94487;94488 96192 96192 1 KQALQDTLALYK IEERYKEVAELTRLRKQALQDTLALYKMFS RLRKQALQDTLALYKMFSEADACELWIDEK R K Q Y K M 2 0 0 1 0 2 0 0 0 0 3 2 0 0 0 0 1 0 1 0 0 0 12 1 1390.782 Q01082;A0A087WUZ3 Q01082 842 853 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00011385 143.97 By matching By matching By MS/MS By matching By matching By matching 1 3 3 2 1 2 0.95951 0.97721 51.571 12 Median 0.6746 0.71355 NaN 1 0 Median 1.0844 1.06 18.269 3 0 Median 0.92283 1.0678 99.689 3 0 Median 1.0361 0.96768 6.1709 2 0 Median 0.92652 0.98887 NaN 1 0 Median 0.64723 0.57757 16.588 2 0 Median 42629000 23607000 19021000 2039300 1085200 954110 5855400 2641400 3214000 28607000 16929000 11677000 2120000 1034800 1085200 3025200 1382600 1642600 982010 534150 447860 18150 2681 18916 94489;94490;94491;94492;94493;94494;94495;94496;94497;94498;94499;94500 96193;96194;96195 96195 3 KQAMHSLQVLAQVTGK HDLVREVTSPNSTVRKQAMHSLQVLAQVTG QAMHSLQVLAQVTGKSVTVIMEPHKEVLQD R K Q G K S 2 0 0 0 0 3 0 1 1 0 2 2 1 0 0 1 1 0 0 2 0 0 16 1 1737.956 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1257 1272 TRRAP Transformation/transcription domain-associated protein yes no 3;4 3.1292E-05 51.265 By MS/MS 2 0.9714 1.1035 8.5207 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9714 1.1035 8.5207 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8602600 4504500 4098000 0 0 0 0 0 0 8602600 4504500 4098000 0 0 0 0 0 0 0 0 0 18151 991 18917 94501;94502 96196;96197 96196 2 KQAQVATGGGPGAPPGSQPDYSAAWAEYYR PPQQDYTKAWEEYYKKQAQVATGGGPGAPP GSQPDYSAAWAEYYRQQAAYYGQTPGPGGP K K Q Y R Q 6 1 0 1 0 3 1 5 0 0 0 1 0 0 4 2 1 1 3 1 0 0 30 1 3079.4424 Q92945;M0R3J3;M0R0C6;M0R251;M0R263 Q92945 654 683 KHSRP Far upstream element-binding protein 2 yes no 3 1.2945E-19 74.13 By MS/MS 1 0.43634 0.49456 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43634 0.49456 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11729000 9188900 2540100 0 0 0 0 0 0 11729000 9188900 2540100 0 0 0 0 0 0 0 0 0 18152 3568 18918 94503 96198;96199 96198 2 KQDAFYKEQLAR EDKARQLEEKDRVLKKQDAFYKEQLARLEE VLKKQDAFYKEQLARLEERSSEFYRVTTEQ K K Q A R L 2 1 0 1 0 2 1 0 0 0 1 2 0 1 0 0 0 0 1 0 0 0 12 2 1495.7783 C9JRZ6;F8WAR4;Q9NX63 C9JRZ6 141 152 CHCHD3 MICOS complex subunit MIC19 yes no 3 0.00014374 78.705 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 1 1 1.4013 1.4209 23.675 8 Median 1.2374 1.2874 18.678 2 0 Median 1.5418 1.3634 21.507 3 0 Plateau 1.1653 1.4721 NaN 1 0 Median 2.4983 2.0607 NaN 1 0 Median 1.4276 1.6854 NaN 1 0 Median NaN NaN NaN 0 0 Median 26999000 11443000 15556000 14946000 6588700 8357100 6555600 2495600 4060000 1157400 524660 632780 1031300 307950 723340 3308800 1525900 1782900 0 0 0 18153 720 18919 94504;94505;94506;94507;94508;94509;94510;94511 96200;96201;96202;96203 96201 4 KQDHLWQQSTTR SPIPGSQLPSGCRMRKQDHLWQQSTTRLTE RMRKQDHLWQQSTTRLTEMLKTIKTVKADV R K Q T R L 0 1 0 1 0 3 0 0 1 0 1 1 0 0 0 1 2 1 0 0 0 0 12 1 1526.759 Q9NU22 Q9NU22 4375 4386 MDN1 Midasin yes yes 3 0.010609 26.124 By MS/MS 1 1.0105 1.166 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0105 1.166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995430 508180 487260 0 0 0 0 0 0 995430 508180 487260 0 0 0 0 0 0 0 0 0 18154 4112 18920 94512 96204;96205 96204 2 KQDPPVTHDLR VNFGRSRSAQEPARKKQDPPVTHDLRVSLE PARKKQDPPVTHDLRVSLEEIYSGCTKKMK K K Q L R V 0 1 0 2 0 1 0 0 1 0 1 1 0 0 2 0 1 0 0 1 0 0 11 1 1304.6837 P25685;M0R080;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6;M0QZD0 P25685 159 169 DNAJB1 DnaJ homolog subfamily B member 1 yes no 3 0.0082051 29.936 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 0.72647 0.74207 8.4726 5 Median 0.61856 0.65803 NaN 1 0 Median 0.76811 0.7168 NaN 1 0 Median 0.71517 0.80448 0.56063 2 0 Median 0.83968 0.74207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1556600 830960 725670 97988 51842 46145 550210 288990 261210 544860 310950 233920 363580 179190 184390 0 0 0 0 0 0 18155 2134 18921 94513;94514;94515;94516;94517 96206;96207;96208 96208 3 KQDQPTFDNSGNILSK VSKTQLEMNLPLMIKKQDQPTFDNSGNILS QDQPTFDNSGNILSKEEKATVEFSTDMSVE K K Q S K E 0 0 2 2 0 2 0 1 0 1 1 2 0 1 1 2 1 0 0 0 0 0 16 1 1790.8799 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 677 692 SYNE2 Nesprin-2 yes no 3 0.052994 19.39 By MS/MS 1 0.89927 0.91361 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89927 0.91361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1104900 537320 567610 0 0 0 0 0 0 0 0 0 1104900 537320 567610 0 0 0 0 0 0 18156 3521 18922 94518 96209 96209 1 KQEAGFALQHGLQEK QSKEDLRLMLIELKKKQEAGFALQHGLQEK KQEAGFALQHGLQEKKAQLKIYKKFLKKAQ K K Q E K K 2 0 0 0 0 3 2 2 1 0 2 2 0 1 0 0 0 0 0 0 0 0 15 1 1682.874 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2164 2178 SYNE2 Nesprin-2 yes no 3 0.052092 10.485 By MS/MS 1 0.81079 0.9213 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81079 0.9213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516600 2250200 1266400 0 0 0 0 0 0 3516600 2250200 1266400 0 0 0 0 0 0 0 0 0 18157 3521 18923 94519 96210;96211 96211 2 KQEDFMTTMDANEEK TEMPTTLEGAEAAIKKQEDFMTTMDANEEK KQEDFMTTMDANEEKINAVVETGRRLVSDG K K Q E K I 1 0 1 2 0 1 3 0 0 0 0 2 2 1 0 0 2 0 0 0 0 0 15 1 1815.7655 Q01082;A0A087WUZ3 Q01082 1210 1224 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.5812E-10 112.43 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1.0173 0.97331 17.688 9 Median NaN NaN NaN 0 0 Median 1.2648 1.222 18.215 4 0 Median 0.78829 0.91253 9.1184 2 0 Median 1.0863 1.0214 13.265 2 0 Median 0.86236 0.91723 NaN 1 0 Median NaN NaN NaN 0 0 Median 54024000 27881000 26142000 0 0 0 15376000 7422700 7953300 27434000 14951000 12483000 8590500 4228200 4362300 2623300 1279600 1343600 0 0 0 18158 2681 18924 94520;94521;94522;94523;94524;94525;94526;94527;94528 96212;96213;96214;96215;96216;96217;96218;96219 96213 8 KQEEEETMQQATWVK SIEREEKEKVKKKEKKQEEEETMQQATWVK KQEEEETMQQATWVKYTFPVKHQVWKQKGE K K Q V K Y 1 0 0 0 0 3 4 0 0 0 0 2 1 0 0 0 2 1 0 1 0 0 15 1 1863.8673 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 995 1009 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 5.3485E-05 72.898 By MS/MS By matching 1 2 1.2221 1.1667 11.217 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88015 0.99862 NaN 1 0 Median 1.2352 1.2036 4.3968 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10093000 4577800 5514800 0 0 0 0 0 0 7407500 3522000 3885600 2685100 1055800 1629200 0 0 0 0 0 0 18159 2762 18925 94529;94530;94531 96220;96221 96221 2 KQEEIDVIQEVLEK HLANDGYMLLAGRVRKQEEIDVIQEVLEKH RKQEEIDVIQEVLEKHFKKKLCPQSLFSKE R K Q E K H 0 0 0 1 0 2 4 0 0 2 1 2 0 0 0 0 0 0 0 2 0 0 14 1 1698.904 Q9NU22 Q9NU22 1312 1325 MDN1 Midasin yes yes 3 0.0041905 29.013 By MS/MS By matching 1 1 1.3522 1.2938 25.734 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94904 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9266 1.552 NaN 1 0 Median 3512200 1656400 1855800 0 0 0 0 0 0 3303700 1575900 1727700 0 0 0 0 0 0 208540 80440 128100 18160 4112 18926 94532;94533 96222;96223 96222 2 KQEELQQLEQQR EARRRQHEAEEGVRRKQEELQQLEQQRRQQ VRRKQEELQQLEQQRRQQEELLAEENQRLR R K Q Q R R 0 1 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1555.7954 Q15149;H0YDN1 Q15149 2706 2717 PLEC Plectin yes no 3 0.00019171 88.021 By MS/MS 1 1.1026 0.97947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1026 0.97947 NaN 1 1 Median 2304600 1026400 1278200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2304600 1026400 1278200 18161 2933 18927 94534 96224 96224 1 KQEELQQLEQQRR EARRRQHEAEEGVRRKQEELQQLEQQRRQQ RRKQEELQQLEQQRRQQEELLAEENQRLRE R K Q R R Q 0 2 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1711.8965 Q15149;H0YDN1 Q15149 2706 2718 PLEC Plectin yes no 3 0.057927 14.687 By MS/MS 1 1.2252 1.182 NaN 1 Median 1.2252 1.182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9128500 4083400 5045100 9128500 4083400 5045100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18162 2933 18928 94535 96225 96225 1 KQEELVQQVR QPLCKAFMVTDEDIRKQEELVQQVRKRLEE DEDIRKQEELVQQVRKRLEEALMADMLAHV R K Q V R K 0 1 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 1 1255.6884 O95983;K7EIE8 O95983 227 236 MBD3 Methyl-CpG-binding domain protein 3 yes no 2;3 9.8189E-05 98.044 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 1.0918 1.0973 11.246 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99016 1.0783 2.0698 2 0 Median 1.0084 0.95167 8.8345 2 0 Median 1.1359 1.1932 3.4975 2 0 Median 1.2053 1.1022 13.263 4 0 Median 21687000 10504000 11183000 0 0 0 0 0 0 8900200 4483700 4416500 9572000 4549500 5022500 1784200 777370 1006900 1430600 693690 736900 18163 1804 18929 94536;94537;94538;94539;94540;94541;94542;94543;94544;94545;94546 96226;96227;96228;96229;96230;96231;96232;96233;96234;96235;96236 96232 11 KQEEQMETEHINPVTEK MLKGQHEKEAADRKRKQEEQMETEHINPVT EEQMETEHINPVTEKRIQVEQTRDEDLDTD R K Q E K R 0 0 1 0 0 2 5 0 1 1 0 2 1 0 1 0 2 0 0 1 0 0 17 1 2068.9735 V9GYT7 V9GYT7 31 47 PSIP1 yes yes 3 7.9375E-06 50.831 By MS/MS By MS/MS 1 2 0.89874 0.89835 26.934 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75011 0.78517 NaN 1 0 Median 1.1173 1.0887 27.179 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11456000 5602100 5854100 0 0 0 0 0 0 8262000 4186800 4075100 3194200 1415200 1778900 0 0 0 0 0 0 18164 4563 18930 94547;94548;94549 96237;96238;96239;96240 96238 4 KQEEQMETEHINPVTEKR MLKGQHEKEAADRKRKQEEQMETEHINPVT EQMETEHINPVTEKRIQVEQTRDEDLDTDS R K Q K R I 0 1 1 0 0 2 5 0 1 1 0 2 1 0 1 0 2 0 0 1 0 0 18 2 2225.0746 V9GYT7 V9GYT7 31 48 PSIP1 yes yes 4 0.00084311 32.181 By matching By MS/MS By MS/MS 1 2 1 0.82332 0.9149 25.093 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69237 0.80329 NaN 1 0 Median 1.0183 1.0977 7.3564 2 0 Median 0.5811 0.66473 NaN 1 0 Median NaN NaN NaN 0 0 Median 7821600 4342100 3479500 0 0 0 0 0 0 3834100 2157500 1676600 2311700 1164600 1147200 1675800 1019900 655820 0 0 0 18165 4563 18931 94550;94551;94552;94553 96241;96242 96242 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK GASSSKESSRISDGKKQEGPATQVDSAVGT TLPATSPQSTSVQAKGTNKLRKPKLPEVQQ K K Q A K G 4 0 0 1 0 4 1 2 0 0 1 2 0 0 3 4 4 0 0 3 0 0 29 1 2882.4621 E7ETY2;A0A3B3IS06 E7ETY2 1091 1119 TCOF1 yes no 3 1.4867E-14 68.444 By MS/MS By MS/MS 1 2 0.64219 0.63124 1.5723 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54504 0.63124 NaN 1 1 Median 0.65211 0.61609 1.0045 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15649000 10428000 5221100 0 0 0 0 0 0 13201000 8926500 4274400 2448200 1501500 946730 0 0 0 0 0 0 18166 891 18932 94554;94555;94556 96243;96244 96243 2 KQEGTPEGLYL TNEDFKKSKENVLYKKQEGTPEGLYL____ VLYKKQEGTPEGLYL_______________ K K Q Y L - 0 0 0 0 0 1 2 2 0 0 2 1 0 0 1 0 1 0 1 0 0 0 11 1 1233.6241 P62191 P62191 430 440 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.0070508 59.245 By MS/MS 1 3.4643 3.195 NaN 1 Median 3.4643 3.195 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25248000 7113100 18135000 25248000 7113100 18135000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18167 2571 18933 94557 96245 96245 1 KQEIFYTAIVNR VPPKREVVVYAPLSKKQEIFYTAIVNRTIA LSKKQEIFYTAIVNRTIANMFGSSEKETIE K K Q N R T 1 1 1 0 0 1 1 0 0 2 0 1 0 1 0 0 1 0 1 1 0 0 12 1 1480.8038 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 351 362 HELLS Lymphoid-specific helicase yes no 2;3 5.5036E-05 95.573 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0188 1.0465 15.577 6 Median NaN NaN NaN 0 0 Median 0.9506 0.95661 NaN 1 0 Median 0.91775 1.0396 1.2749 2 0 Median 1.2722 1.2182 21.839 2 1 Median NaN NaN NaN 0 0 Median 1.415 1.3052 NaN 1 0 Median 34749000 16979000 17771000 0 0 0 260410 160380 100040 32544000 15962000 16582000 1653700 776320 877390 0 0 0 290810 79847 210960 18168 211 18934 94558;94559;94560;94561;94562;94563 96246;96247;96248;96249 96246 4 KQELEEILHDLESR LFAEAEEMRARLAAKKQELEEILHDLESRV KKQELEEILHDLESRVEEEEERNQILQNEK K K Q S R V 0 1 0 1 0 1 4 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 14 1 1737.8897 P35580 P35580 917 930 MYH10 Myosin-10 yes yes 2;3 1.1831E-07 99.671 By MS/MS By MS/MS By MS/MS 2 2 1 1.1283 1.0677 12.805 5 Median 1.0295 1.0428 18.597 2 0 Median 1.1806 1.104 4.7321 2 0 Median 0.75055 0.89749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74145000 33084000 41060000 8316900 3567700 4749100 62152000 27313000 34839000 3676000 2203700 1472400 0 0 0 0 0 0 0 0 0 18169 2245 18935 94564;94565;94566;94567;94568 96250;96251;96252;96253;96254;96255 96252 6 KQELELVVSELEAR LCAEAEETRGRLAARKQELELVVSELEARV RKQELELVVSELEARVGEEEECSRQMQTEK R K Q A R V 1 1 0 0 0 1 4 0 0 0 3 1 0 0 0 1 0 0 0 2 0 0 14 1 1641.8938 Q7Z406 Q7Z406 934 947 MYH14 Myosin-14 no no 3 0.0045521 27.969 By MS/MS 1 1.1276 1.1539 NaN 1 Median 1.1276 1.1539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1779300 676080 1103300 1779300 676080 1103300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18170 3242 18936 94569 96256 96256 1 KQELLEALTK LKEACRAYGLKSGLKKQELLEALTKHFQD_ KSGLKKQELLEALTKHFQD___________ K K Q T K H 1 0 0 0 0 1 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1171.6812 P12956;B1AHC9 P12956 596 605 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 5.141E-05 141.1 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.233 1.1661 18.592 6 Median 1.3719 1.3452 34.456 2 0 Median 1.2297 1.1661 8.9959 2 0 Median 0.97515 1.0515 NaN 1 0 Median 1.3595 1.2553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 325290000 149920000 175370000 67242000 30918000 36324000 38097000 15703000 22394000 165500000 80928000 84571000 54450000 22370000 32080000 0 0 0 0 0 0 18171 1985 18937 94570;94571;94572;94573;94574;94575 96257;96258;96259;96260;96261;96262;96263;96264;96265;96266 96260 10 KQEQLTPGVVYVR QKEVAQVRKRITQRKKQEQLTPGVVYVRHL RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K K Q V R H 0 1 0 0 0 2 1 1 0 0 1 1 0 0 1 0 1 0 1 3 0 0 13 1 1515.8409 Q9BYG3 Q9BYG3 38 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2;3 0.00091676 42.785 By MS/MS 2 1.2259 1.3355 21.887 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2259 1.3355 21.887 2 0 Median NaN NaN NaN 0 0 Median 23908000 9561900 14346000 0 0 0 0 0 0 0 0 0 0 0 0 23908000 9561900 14346000 0 0 0 18172 3891 18938 94576;94577 96267;96268 96267 2 KQESTVMVLR SGSSARHMVMQKLLRKQESTVMVLRNMVDP QKLLRKQESTVMVLRNMVDPKDIDDDLEGE R K Q L R N 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 2 0 0 10 1 1189.6489 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 433 442 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 0.00054952 95.502 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 1.1489 1.1533 11.111 6 Median 1.2277 1.2363 NaN 1 0 Median 1.3034 1.1901 NaN 1 0 Median 1.0105 1.1328 NaN 1 0 Median 1.0424 0.96686 6.023 2 1 Median NaN NaN NaN 0 0 Median 1.2916 1.1743 NaN 1 1 Median 29931000 13297000 16634000 3850400 1671300 2179100 7350100 3407400 3942700 9572000 4783600 4788400 6276600 2610900 3665700 0 0 0 2881900 824290 2057600 18173 284 18939 94578;94579;94580;94581;94582;94583;94584;94585 96269;96270;96271;96272;96273;96274;96275;96276;96277 96272 9 KQEVQAWDGEVR TSAVEALLSADSASRKQEVQAWDGEVRQVS ASRKQEVQAWDGEVRQVSKHAFSLKQLDNP R K Q V R Q 1 1 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 1 0 2 0 0 12 1 1443.7106 P45974 P45974 163 174 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 3 0.0019933 56.956 By MS/MS 1 0.86516 0.8635 NaN 1 Median NaN NaN NaN 0 0 Median 0.86516 0.8635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3116500 1509900 1606600 0 0 0 3116500 1509900 1606600 0 0 0 0 0 0 0 0 0 0 0 0 18174 2332 18940 94586 96278 96278 1 KQEVTAIER IELFHKTAALVLHGRKQEVTAIERSQTLSQ LVLHGRKQEVTAIERSQTLSQMTIVLCKEL R K Q E R S 1 1 0 0 0 1 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 9 1 1072.5877 Q9NRY5;E7ESJ7 Q9NRY5 405 413 FAM114A2 Protein FAM114A2 yes no 2 0.025826 41.029 By matching By MS/MS By matching 1 1 1 1.0639 0.98263 30.902 3 Median 0.68642 0.69834 NaN 1 0 Median 1.0639 0.98263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4568 1.2941 NaN 1 0 Median 1831300 872060 959280 414130 206150 207980 925060 493530 431530 0 0 0 0 0 0 0 0 0 492150 172380 319770 18175 4095 18941 94587;94588;94589 96279 96279 1 KQGGLGPMNIPLVSDPK VDSHFCHLAWVNTPKKQGGLGPMNIPLVSD GGLGPMNIPLVSDPKRTIAQDYGVLKADEG K K Q P K R 0 0 1 1 0 1 0 3 0 1 2 2 1 0 3 1 0 0 0 1 0 0 17 1 1749.9447 Q06830;A0A0A0MSI0 Q06830 93 109 PRDX1 Peroxiredoxin-1 yes no 2;3 8.672E-05 44.598 By MS/MS By MS/MS By MS/MS 2 1 1 0.77829 0.75727 4.2794 4 Median 0.77829 0.78936 1.9714 2 0 Median 0.8027 0.73327 NaN 1 0 Median 0.73888 0.73669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173520000 96130000 77390000 159380000 88450000 70930000 6569700 3477800 3091900 7570400 4202800 3367600 0 0 0 0 0 0 0 0 0 18176 2728 18942 94590;94591;94592;94593 96280;96281;96282;96283;96284;96285;96286;96287 96283 8 KQGGLGPMNIPLVSDPKR VDSHFCHLAWVNTPKKQGGLGPMNIPLVSD GLGPMNIPLVSDPKRTIAQDYGVLKADEGI K K Q K R T 0 1 1 1 0 1 0 3 0 1 2 2 1 0 3 1 0 0 0 1 0 0 18 2 1906.0459 Q06830;A0A0A0MSI0 Q06830 93 110 PRDX1 Peroxiredoxin-1 yes no 2;3;4 2.4089E-11 109.18 By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 0.85622 0.82753 25.71 12 Median 0.82913 0.88285 4.3194 4 0 Median 0.88202 0.76474 22.981 5 0 Median 0.58289 0.65262 60.354 2 1 Median 0.89136 0.73523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 465820000 246220000 219600000 381000000 198820000 182180000 58870000 31248000 27622000 25079000 15694000 9385200 864270 455630 408630 0 0 0 0 0 0 18177 2728 18943;18944 94594;94595;94596;94597;94598;94599;94600;94601;94602;94603;94604;94605 96288;96289;96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302;96303;96304;96305;96306;96307;96308 96299 1411 21 KQGLEQFINK RGDDGIFDDNFIEERKQGLEQFINKVAGHP FIEERKQGLEQFINKVAGHPLAQNERCLHM R K Q N K V 0 0 1 0 0 2 1 1 0 1 1 2 0 1 0 0 0 0 0 0 0 0 10 1 1203.6612 O60493 O60493 119 128 SNX3 Sorting nexin-3 yes yes 2;3 0.000109 103.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.1924 1.0852 24.955 8 Median 1.0265 1.024 0.50905 2 0 Median 1.1924 1.0546 11.746 2 0 Median 1.6201 1.6229 10.923 2 0 Median 1.3493 1.2136 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95323 0.80403 NaN 1 0 Median 52645000 23260000 29385000 28821000 13402000 15419000 14723000 6374800 8348400 7372200 2693000 4679200 896120 373610 522510 0 0 0 832550 416920 415630 18178 1616 18945 94606;94607;94608;94609;94610;94611;94612;94613 96309;96310;96311;96312;96313;96314;96315;96316;96317;96318;96319 96312 11 KQIEELKGQEVSPK LLLFPLTAQHENFRKKQIEELKGQEVSPKV KKQIEELKGQEVSPKVYFMKQTIGNSCGTI K K Q P K V 0 0 0 0 0 2 3 1 0 1 1 3 0 0 1 1 0 0 0 1 0 0 14 2 1611.8832 P09936;D6RE83;D6R956;D6R974 P09936 65 78 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 3;4 0.00026083 60.196 By MS/MS By MS/MS By matching 2 2 1 1.0318 1.0097 16.486 5 Median 0.9925 1.0614 7.3686 2 0 Median 0.98273 0.96166 6.8905 2 0 Median 1.2494 1.4098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14504000 7044900 7459100 8413500 3995900 4417500 5357000 2740300 2616700 733580 308720 424860 0 0 0 0 0 0 0 0 0 18179 1923 18946 94614;94615;94616;94617;94618 96320;96321;96322;96323;96324 96322 5 KQININNPFVFK AVYQTYVNAMNDKIRKQININNPFVFKHIS KIRKQININNPFVFKHISNLKSMDHFDDIG R K Q F K H 0 0 3 0 0 1 0 0 0 2 0 2 0 2 1 0 0 0 0 1 0 0 12 1 1460.814 Q9UKF6;G5E9W3 Q9UKF6 295 306 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3 0.0009181 45.077 By MS/MS By matching 1 1 0.82086 0.85987 12.512 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83633 0.93942 NaN 1 0 Median 0.80567 0.78706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6329500 3631000 2698500 0 0 0 0 0 0 5970000 3470900 2499100 359540 160110 199430 0 0 0 0 0 0 18180 4309 18947 94619;94620 96325 96325 1 KQISNLQQSISDAEQR NRVIQRLRSEIDNVKKQISNLQQSISDAEQ QISNLQQSISDAEQRGENALKDAKNKLNDL K K Q Q R G 1 1 1 1 0 4 1 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 16 1 1843.9388 P04264;CON__P04264 P04264 417 432 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 6.9966E-142 251.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 11 3 3 0.12755 0.13117 108.61 16 Median 0.076191 0.076641 198.18 3 3 Median 0.059587 0.055075 NaN 1 1 Median 0.44326 0.50295 22.564 2 2 Median 0.20493 0.18902 75.6 6 6 Median 0.10293 0.11646 46.735 2 2 Median 0.080265 0.067164 46.223 2 2 Median 169360000 161430000 7935100 40707000 38098000 2609100 16834000 16076000 757750 24120000 22146000 1974100 58353000 56530000 1822100 17363000 16735000 628420 11984000 11840000 143660 + 18181 1848 18948 94621;94622;94623;94624;94625;94626;94627;94628;94629;94630;94631;94632;94633;94634;94635;94636;94637;94638;94639;94640;94641;94642;94643;94644;94645;94646;94647 96326;96327;96328;96329;96330;96331;96332;96333;96334;96335;96336;96337;96338;96339;96340;96341;96342;96343;96344;96345;96346;96347;96348;96349;96350;96351;96352 96327 27 KQITMEELVR LPLSDARKLTFRGLRKQITMEELVRSQVMD FRGLRKQITMEELVRSQVMDEATALQLREG R K Q V R S 0 1 0 0 0 1 2 0 0 1 1 1 1 0 0 0 1 0 0 1 0 0 10 1 1245.6751 Q15149;H0YDN1 Q15149 4027 4036 PLEC Plectin yes no 2;3 0.0006759 90.629 By MS/MS By MS/MS 2 1 1.4806 1.3813 13.514 3 Median 1.3135 1.2921 9.4426 2 0 Median 1.6772 1.5837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24199000 10973000 13226000 21006000 9648700 11357000 3193000 1324300 1868700 0 0 0 0 0 0 0 0 0 0 0 0 18182 2933 18949 94648;94649;94650 96353;96354;96355 96353 2 KQKPVLEEQVIK VETSSSVRERKKKEKKQKPVLEEQVIKESD KEKKQKPVLEEQVIKESDASKIPGKKVEPV K K Q I K E 0 0 0 0 0 2 2 0 0 1 1 3 0 0 1 0 0 0 0 2 0 0 12 2 1437.8555 Q86UP2 Q86UP2 120 131 KTN1 Kinectin yes yes 3 0.041986 19.394 By matching By matching By MS/MS 2 1 2 0.87808 0.88995 29.943 5 Median 0.93808 1.0032 49.221 2 0 Median NaN NaN NaN 0 0 Median 0.67779 0.69956 NaN 1 0 Median 1.0004 0.97986 13.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6544800 3255700 3289100 2882600 1258400 1624200 0 0 0 950900 593830 357080 2711200 1403400 1307800 0 0 0 0 0 0 18183 3280 18950 94651;94652;94653;94654;94655 96356 96356 1 KQKVEGTEPTTAFNLFVGNLNFNK RKKEMAKQKAAPEAKKQKVEGTEPTTAFNL TTAFNLFVGNLNFNKSAPELKTGISDVFAK K K Q N K S 1 0 4 0 0 1 2 2 0 0 2 3 0 3 1 0 3 0 0 2 0 0 24 2 2695.397 P19338 P19338 295 318 NCL Nucleolin yes yes 3 3.9261E-05 34.914 By MS/MS By matching By matching 1 1 1 0.93487 1.0422 15.218 3 Median 0.81077 0.84989 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9382 1.1445 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93487 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median 5608600 3079500 2529100 3850600 2125600 1725000 0 0 0 810110 343410 466700 0 0 0 947890 610460 337430 0 0 0 18184 2063 18951 94656;94657;94658 96357;96358 96357 2 KQLADETLLK KDQIAQLEASLAAAKKQLADETLLKVDLEN LAAAKKQLADETLLKVDLENRCQSLTEDLE K K Q L K V 1 0 0 1 0 1 1 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1157.6656 P20700;E9PBF6;A0A0D9SFE5 P20700 182 191 LMNB1 Lamin-B1 yes no 2 0.00049876 123.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 6 3 0.93074 1.0052 45.792 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93255 1.0294 NaN 1 0 Median 3.0195 2.868 NaN 1 0 Median 0.78569 0.83935 25.212 5 0 Median 1.4176 1.2634 13.374 3 1 Median 172620000 85959000 86663000 0 0 0 0 0 0 24675000 11737000 12938000 5328700 1401300 3927400 95542000 53497000 42045000 47077000 19324000 27753000 18185 2084 18952 94659;94660;94661;94662;94663;94664;94665;94666;94667;94668;94669 96359;96360;96361;96362;96363;96364;96365;96366;96367;96368;96369;96370;96371 96363 13 KQLEKETLMR RAQLAKAEDGHAVAKKQLEKETLMRVDLEN HAVAKKQLEKETLMRVDLENRCQSLQEELD K K Q M R V 0 1 0 0 0 1 2 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 10 2 1274.7017 Q03252 Q03252 196 205 LMNB2 Lamin-B2 yes yes 3 0.0016504 51.092 By MS/MS By MS/MS 2 2 1.0796 1.1144 15.416 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8645 1.0037 0.49613 2 0 Median 1.3275 1.2978 7.2493 2 0 Median 5688100 2917700 2770400 0 0 0 0 0 0 0 0 0 0 0 0 4252200 2264700 1987500 1435900 653000 782910 18186 2709 18953 94670;94671;94672;94673 96372;96373;96374;96375 96372 4 KQLELRQEEER LRRMEELHNQEVQKRKQLELRQEEERRRRE VQKRKQLELRQEEERRRREEEMRRQQEEMM R K Q E R R 0 2 0 0 0 2 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 2 1456.7634 Q15233;H7C367 Q15233 338 348 NONO Non-POU domain-containing octamer-binding protein yes no 3 5.8596E-05 93.258 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0286 1.0553 14.563 6 Median 0.8969 0.90543 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0798 1.2205 17.582 2 0 Median NaN NaN NaN 0 0 Median 0.98639 1.1054 10.918 2 0 Median 1.191 1.0333 NaN 1 0 Median 18413000 8315700 10097000 854310 508450 345860 0 0 0 1360500 651030 709430 0 0 0 13026000 5812400 7213200 3172500 1343700 1828700 18187 2935 18954 94674;94675;94676;94677;94678;94679 96376;96377;96378;96379;96380 96378 5 KQLLHLAEEK TVVIRGPSSDVEKAKKQLLHLAEEKQTKSF VEKAKKQLLHLAEEKQTKSFTVDIRAKPEY K K Q E K Q 1 0 0 0 0 1 2 0 1 0 3 2 0 0 0 0 0 0 0 0 0 0 10 1 1207.6925 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 714 723 HDLBP Vigilin yes no 3 0.017795 25.296 By MS/MS By matching By matching 1 1 1 1.097 1.1075 8.2823 3 Median 1.0802 1.1075 NaN 1 0 Median 1.097 1.0247 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2991 1.2092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4760100 2041300 2718700 1649500 694280 955240 2671100 1149300 1521700 0 0 0 439500 197760 241740 0 0 0 0 0 0 18188 4 18955 94680;94681;94682 96381 96381 1 KQLQALSSELAQAR EEERVTETQKNERVKKQLQALSSELAQARD KKQLQALSSELAQARDETKKTQNDVLHAEN K K Q A R D 3 1 0 0 0 3 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 14 1 1541.8526 P35241;A0A2R8Y5S7;A0A2R8Y4H6 P35241 526 539 RDX Radixin yes no 3 0.00049201 45.115 By MS/MS 1 1.0912 1.0361 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0912 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1714700 836770 877980 0 0 0 0 0 0 0 0 0 1714700 836770 877980 0 0 0 0 0 0 18189 2235 18956 94683 96382 96382 1 KQLQDEMLR RGQVAKLEAALGEAKKQLQDEMLRRVDAEN ALGEAKKQLQDEMLRRVDAENRLQTMKEEL K K Q L R R 0 1 0 1 0 2 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 1 1159.6019 P02545;H0YAB0;Q3BDU5 P02545 181 189 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0012371 90.657 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1.3123 1.299 5.8814 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2002 1.3318 NaN 1 0 Median 1.3123 1.2032 NaN 1 0 Median 1.2421 1.2676 NaN 1 0 Median 1.5351 1.3535 5.8138 2 1 Median 40435000 18306000 22129000 0 0 0 0 0 0 1182900 535140 647740 5119100 2233000 2886100 18173000 9166800 9005900 15960000 6371300 9589100 18190 1834;3010 18957 94684;94685;94686;94687;94688 96383;96384;96385;96386 96386 4 KQLQDEMLRR RGQVAKLEAALGEAKKQLQDEMLRRVDAEN LGEAKKQLQDEMLRRVDAENRLQTMKEELD K K Q R R V 0 2 0 1 0 2 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 10 2 1315.7031 P02545;H0YAB0;Q3BDU5 P02545 181 190 LMNA Prelamin-A/C;Lamin-A/C no no 3 0.012673 31.494 By matching By MS/MS By MS/MS 1 2 1 1.3015 1.1389 15.186 4 Linear 0.96254 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1441 1.3236 14.421 2 0 Median 1.2028 1.0435 NaN 1 0 Median 10209000 4473000 5735600 861190 438600 422590 0 0 0 0 0 0 0 0 0 7062100 3131200 3931000 2285200 903190 1382000 18191 1834;3010 18958 94689;94690;94691;94692 96387;96388;96389 96388 3 KQLQDIATLADQR VWYQALTHGLNEEQRKQLQDIATLADQRRA QRKQLQDIATLADQRRAAHESKMIEKHGGY R K Q Q R R 2 1 0 2 0 3 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1498.8104 O95373 O95373 990 1002 IPO7 Importin-7 yes yes 3 0.053586 19.058 By MS/MS By matching 1 1 1.0381 1.0379 35.752 2 Median 1.2849 1.3365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83879 0.80609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5514000 2495400 3018600 3636500 1418900 2217700 0 0 0 0 0 0 1877400 1076500 800920 0 0 0 0 0 0 18192 1768 18959 94693;94694 96390 96390 0 KQLQDIATLADQRR VWYQALTHGLNEEQRKQLQDIATLADQRRA RKQLQDIATLADQRRAAHESKMIEKHGGYK R K Q R R A 2 2 0 2 0 3 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 14 2 1654.9115 O95373 O95373 990 1003 IPO7 Importin-7 yes yes 3 0.011358 25.718 By MS/MS 1 1.4582 1.5706 NaN 1 Median 1.4582 1.5706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12387000 5242700 7143800 12387000 5242700 7143800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18193 1768 18960 94695 96391;96392 96391 2 KQLQVELQSR LQDLQKRLESSEAERKQLQVELQSRRAELV SEAERKQLQVELQSRRAELVCLNNTEISEN R K Q S R R 0 1 0 0 0 3 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1227.6935 Q9P0K7 Q9P0K7 453 462 RAI14 Ankycorbin yes yes 2;3 0.0002048 89.171 By MS/MS By MS/MS 2 1 1.3151 1.285 13.638 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3151 1.2638 10.974 2 1 Median NaN NaN NaN 0 0 Median 1.1834 1.0407 NaN 1 1 Median 2889700 1181700 1708000 0 0 0 0 0 0 0 0 0 2347800 938810 1409000 0 0 0 541890 242930 298960 18194 4204 18961 94696;94697;94698 96393;96394;96395 96394 3 KQMADTGKLNTLLQR GTNTIMDKMMVAGFKKQMADTGKLNTLLQR KQMADTGKLNTLLQRAPQCLGKFIEIAARK K K Q Q R A 1 1 1 1 0 2 0 1 0 0 3 2 1 0 0 0 2 0 0 0 0 0 15 2 1715.9352 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;A0A1W2PPE9 Q00839 544 558 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.00010605 55.885 By MS/MS 3 0.90029 1.0609 3.1437 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90029 1.0609 3.1437 3 0 Median NaN NaN NaN 0 0 Median 18434000 8718800 9715100 0 0 0 0 0 0 0 0 0 0 0 0 18434000 8718800 9715100 0 0 0 18195 2680 18962;18963 94699;94700;94701 96396;96397;96398 96397 1356 3 KQMVIDVLHPGK TIRTRKFMTNRLLQRKQMVIDVLHPGKATV LQRKQMVIDVLHPGKATVPKTEIREKLAKM R K Q G K A 0 0 0 1 0 1 0 1 1 1 1 2 1 0 1 0 0 0 0 2 0 0 12 1 1363.7646 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847 E7ETK0 21 32 RPS24 40S ribosomal protein S24 yes no 2;3 9.9523E-07 122.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 4 4 0.96764 0.94332 21.21 20 Median 0.91602 0.91029 6.6412 4 0 Median 1.0055 0.88966 10.852 5 0 Median 0.82772 0.81161 34.902 2 0 Median 1.3088 1.1782 NaN 1 0 Median 0.92423 1.0208 10.992 4 0 Median 1.1632 0.98113 39.29 4 0 Median 261270000 134920000 126350000 166920000 87075000 79848000 68790000 34751000 34040000 7636400 4255800 3380600 2778100 1064000 1714200 10398000 5419900 4977800 4740800 2351300 2389500 18196 387 18964;18965 94702;94703;94704;94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715;94716;94717;94718;94719;94720;94721 96399;96400;96401;96402;96403;96404;96405;96406;96407;96408;96409;96410;96411;96412;96413;96414;96415;96416;96417;96418;96419;96420;96421;96422;96423 96403 181 24 KQNDVFGEAEQ KRMAGTAFDFENMKRKQNDVFGEAEQ____ NMKRKQNDVFGEAEQ_______________ R K Q E Q - 1 0 1 1 0 2 2 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 11 1 1263.5731 P31150 P31150 437 447 GDI1 Rab GDP dissociation inhibitor alpha yes yes 2 0.018938 37.476 By MS/MS 1 1.1565 1.0965 NaN 1 Median 1.1565 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4162600 2046500 2116100 4162600 2046500 2116100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18197 2201 18966 94722 96424 96424 1 KQNMILSDEAIK EQKIKESKKHVQETRKQNMILSDEAIKYKD ETRKQNMILSDEAIKYKDKIKTLEKNQEIL R K Q I K Y 1 0 1 1 0 1 1 0 0 2 1 2 1 0 0 1 0 0 0 0 0 0 12 1 1388.7334 Q5JRA6;A0A0A0MRH6 Q5JRA6 1253 1264 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.045975 27.329 By MS/MS 1 0.8222 0.80259 NaN 1 Median NaN NaN NaN 0 0 Median 0.8222 0.80259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 871310 506160 365160 0 0 0 871310 506160 365160 0 0 0 0 0 0 0 0 0 0 0 0 18198 3049 18967 94723 96425 96425 1 KQNNFSLAMK SCKFSMKMKMIDSARKQNNFSLAMKLLKEL IDSARKQNNFSLAMKLLKELHKESKTRDDW R K Q M K L 1 0 2 0 0 1 0 0 0 0 1 2 1 1 0 1 0 0 0 0 0 0 10 1 1179.607 P78527 P78527 3248 3257 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.7701E-05 142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1 1 0.95754 0.99224 21.851 10 Median 0.95754 1.0116 4.2491 2 0 Median 1.5108 1.4449 NaN 1 0 Median 0.88736 1.0029 17.508 3 0 Plateau 1.3223 1.3008 15.163 2 1 Median 0.79004 0.85314 NaN 1 0 Median 0.99302 0.88614 NaN 1 0 Median 116160000 57339000 58818000 14642000 6740900 7901000 21419000 8930500 12488000 56311000 29806000 26505000 8086000 2498000 5588100 11645000 7558900 4085800 4055100 1805300 2249900 18199 2647 18968 94724;94725;94726;94727;94728;94729;94730;94731;94732;94733;94734 96426;96427;96428;96429;96430;96431;96432;96433;96434;96435;96436;96437;96438 96433 13 KQNVQFMHNR PHQIIMPSAIERSVRKQNVQFMHNRMQYSM ERSVRKQNVQFMHNRMQYSMEYFQFMKKLL R K Q N R M 0 1 2 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 10 1 1300.6459 Q93008 Q93008 1993 2002 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 0.019078 24.855 By MS/MS By MS/MS 1 1 1.0588 1.0539 7.4605 2 Median 0.97575 0.99976 NaN 1 0 Median 1.1489 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 969730 483970 485750 404730 203570 201150 565000 280400 284600 0 0 0 0 0 0 0 0 0 0 0 0 18200 3573 18969 94735;94736 96439;96440;96441 96440 3 KQPALDVLYDVMK ENALKRANEFLEVGKKQPALDVLYDVMKSK GKKQPALDVLYDVMKSKKHRTWQKIHEPIM K K Q M K S 1 0 0 2 0 1 0 0 0 0 2 2 1 0 1 0 0 0 1 2 0 0 13 1 1518.8116 Q14152 Q14152 24 36 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 0.00093133 68.355 By MS/MS By matching 2 3 1.0303 1.0045 7.8729 5 Median 0.9611 0.93428 13.173 2 0 Median 1.0303 1.0045 2.1462 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22004000 10763000 11241000 19086000 9363700 9722600 2917500 1398900 1518600 0 0 0 0 0 0 0 0 0 0 0 0 18201 2860 18970 94737;94738;94739;94740;94741 96442;96443;96444;96445 96445 4 KQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK GDNYNSPVPPKHAGKKQPHGGQQKPSYGSG YNQSPYSNYGPPQGKQKGYNHGQGSYSYSN K K Q G K Q 0 0 2 0 0 10 0 7 2 0 0 3 0 0 5 6 0 0 5 0 0 0 40 2 4407.0078 Q12906 Q12906 734 773 ILF3 Interleukin enhancer-binding factor 3 yes yes 4;5;6 2.512E-05 39.122 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 5 2 0.46696 0.51496 17.878 11 Median NaN NaN NaN 0 0 Median 0.46696 0.44349 NaN 1 0 Median 0.38602 0.47088 NaN 1 0 Median 0.57223 0.58601 7.7192 2 0 Median 0.4619 0.50722 21.71 5 3 Median 0.54456 0.59169 2.2736 2 1 Median 148190000 108070000 40119000 0 0 0 1859300 1338600 520680 15426000 10774000 4652100 5274400 3260500 2013900 114820000 84971000 29851000 10811000 7729300 3081400 18202 2769 18971 94742;94743;94744;94745;94746;94747;94748;94749;94750;94751;94752;94753 96446;96447;96448;96449;96450;96451;96452;96453;96454;96455;96456;96457;96458;96459 96448 13 KQPPVSPGTALVGSQK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ QPPVSPGTALVGSQKEPSEVPTPKRPRGRP R K Q Q K E 1 0 0 0 0 2 0 2 0 0 1 2 0 0 3 2 1 0 0 2 0 0 16 1 1592.8886 P17096 P17096 31 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 2;3 1.9575E-10 131.79 By MS/MS By MS/MS By matching 6 1 1 0.61974 0.62572 26.867 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61543 0.62132 5.2263 6 1 Median 0.86761 0.78151 NaN 1 0 Median 1.1998 1.276 NaN 1 0 Median NaN NaN NaN 0 0 Median 116400000 70651000 45751000 0 0 0 0 0 0 108490000 66737000 41754000 5298800 2741700 2557100 2613300 1173000 1440300 0 0 0 18203 2036 18972 94754;94755;94756;94757;94758;94759;94760;94761 96460;96461;96462;96463;96464;96465;96466;96467;96468;96469;96470;96471;96472;96473;96474;96475 96463 16 KQPPVSPGTALVGSQKEPSEVPTPK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA R K Q P K R 1 0 0 0 0 2 2 2 0 0 1 3 0 0 6 3 2 0 0 3 0 0 25 2 2557.3752 P17096 P17096 31 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 3;4 6.4887E-25 104.53 By MS/MS By MS/MS By MS/MS 4 2 2 0.39303 0.43994 25.596 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35829 0.40073 7.7879 4 0 Median 0.73325 0.67422 24.627 2 0 Median 0.40844 0.46161 3.363 2 0 Median NaN NaN NaN 0 0 Median 321170000 229150000 92023000 0 0 0 0 0 0 245580000 175600000 69978000 5383500 3283900 2099600 70213000 50268000 19945000 0 0 0 18204 2036 18973 94762;94763;94764;94765;94766;94767;94768;94769 96476;96477;96478;96479;96480;96481;96482;96483;96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494 96480 19 KQPTGTVPLSVTAALQLTHSQEDSSR RASKASLPPLTKDTKKQPTGTVPLSVTAAL TAALQLTHSQEDSSRCSDNSSYEEPLSPIS K K Q S R C 2 1 0 1 0 3 1 1 1 0 3 1 0 0 2 4 4 0 0 2 0 0 26 1 2750.4199 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 714 739 PHC2 Polyhomeotic-like protein 2 yes no 4 3.9692E-07 47.745 By MS/MS 1 0.72684 0.8263 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72684 0.8263 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6200300 3676200 2524100 0 0 0 0 0 0 6200300 3676200 2524100 0 0 0 0 0 0 0 0 0 18205 180 18974 94770 96495 96495 1 KQQAIELTQEEPYSDIIATPGPR RKQAAAKFYSFLVLKKQQAIELTQEEPYSD QEEPYSDIIATPGPRFHII___________ K K Q P R F 2 1 0 1 0 3 3 1 0 3 1 1 0 0 3 1 2 0 1 0 0 0 23 1 2583.318 O60216;E5RFZ5;E5RI01;E5RG18 O60216 605 627 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 3.3455E-13 76.186 By MS/MS 1 0.47733 0.54161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47733 0.54161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6508800 4467000 2041800 0 0 0 0 0 0 6508800 4467000 2041800 0 0 0 0 0 0 0 0 0 18206 1603 18975 94771 96496;96497 96497 2 KQQISLATQMVR NDMKQQHVIETLIGKKQQISLATQMVRMIL IGKKQQISLATQMVRMILKIDDIRKPGESE K K Q V R M 1 1 0 0 0 3 0 0 0 1 1 1 1 0 0 1 1 0 0 1 0 0 12 1 1401.7762 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 514 525 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 1.9949E-06 163.64 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 1.172 1.0799 25.295 8 Median 1.1581 1.1595 5.0886 2 0 Median 1.189 1.0785 16.347 3 0 Median 1.2168 1.3602 NaN 1 0 Median 1.1551 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75832 0.60614 NaN 1 0 Median 131670000 60015000 71653000 64620000 29560000 35060000 58023000 26164000 31858000 4971700 2224900 2746700 756030 326890 429130 0 0 0 3297600 1738300 1559200 18207 2364 18976 94772;94773;94774;94775;94776;94777;94778;94779 96498;96499;96500;96501;96502;96503;96504;96505;96506 96498 9 KQQLEVELR DIQQQKATGSEVSQRKQQLEVELRQVTQMR SEVSQRKQQLEVELRQVTQMRTEESVRYKQ R K Q L R Q 0 1 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1141.6455 P15924 P15924 1444 1452 DSP Desmoplakin yes yes 2 0.0004517 137.14 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1.218 1.179 18.095 9 Median 1.0291 1.055 23.623 2 0 Median 1.2845 1.2111 10.636 2 0 Median NaN NaN NaN 0 0 Median 0.9905 0.92261 NaN 1 0 Median 0.86026 0.97618 NaN 1 0 Median 1.5565 1.3486 12.3 3 0 Median 35402000 16147000 19255000 4711400 2415500 2296000 7235300 2977200 4258100 0 0 0 1247900 668290 579620 10023000 5203500 4819500 12185000 4883000 7301700 18208 2021 18977 94780;94781;94782;94783;94784;94785;94786;94787;94788 96507;96508;96509;96510;96511;96512 96511 5 KQQMAEEMVEAAGEDER ETDHNAYTEATKAQRKQQMAEEMVEAAGED QMAEEMVEAAGEDERELAAEMAAAFLNENL R K Q E R E 3 1 0 1 0 2 5 1 0 0 0 1 2 0 0 0 0 0 0 1 0 0 17 1 1949.8459 Q15393 Q15393 816 832 SF3B3 Splicing factor 3B subunit 3 yes yes 3 0.00012151 41.86 By matching By MS/MS 1 1 1.1673 1.2303 16.429 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94763 1.0954 NaN 1 0 Median 1.4379 1.3818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3957800 1831300 2126500 0 0 0 0 0 0 2371800 1155700 1216100 1586100 675600 910460 0 0 0 0 0 0 18209 2946 18978 94789;94790 96513 96513 1 KQQMLENQMEVR DDYGKDLTSVNILLKKQQMLENQMEVRKKE LLKKQQMLENQMEVRKKEIEELQSQAQALS K K Q V R K 0 1 1 0 0 3 2 0 0 0 1 1 2 0 0 0 0 0 0 1 0 0 12 1 1532.7439 Q01082 Q01082 1421 1432 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.2045E-06 154.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1 1.0705 1.1094 24.223 8 Median 1.2206 1.2323 NaN 1 1 Median 1.5004 1.4068 31.879 2 0 Median 0.9858 1.1778 22.492 2 0 Median 0.98857 0.95435 NaN 1 0 Median 0.96913 1.0961 NaN 1 0 Median 0.89639 0.79627 NaN 1 0 Median 58156000 28396000 29760000 4846800 1999700 2847100 18347000 8158500 10188000 23928000 13089000 10839000 4738600 2393900 2344700 4682200 2011800 2670400 1613400 743010 870420 18210 2681 18979 94791;94792;94793;94794;94795;94796;94797;94798;94799 96514;96515;96516;96517;96518;96519;96520;96521;96522;96523;96524;96525 96523 12 KQQNESAEDEQELSEVFMK ETLLNSEVHMLLEHRKQQNESAEDEQELSE ESAEDEQELSEVFMKTLNYTARFSRFKNRE R K Q M K T 1 0 1 1 0 3 5 0 0 0 1 2 1 1 0 2 0 0 0 1 0 0 19 1 2268.0216 O15514;E9PHV4;E9PB93 O15514 45 63 POLR2D DNA-directed RNA polymerase II subunit RPB4 yes no 3 0.019098 15.09 By MS/MS By matching 1 1 0.76333 0.82848 9.3714 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75674 0.77536 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76998 0.88524 NaN 1 0 Median NaN NaN NaN 0 0 Median 2728100 1677300 1050800 0 0 0 0 0 0 1745800 1159300 586460 0 0 0 982330 518010 464320 0 0 0 18211 937 18980 94800;94801 96526 96526 1 KQQNQELQEQLR YKLQMEKAKTHYDAKKQQNQELQEQLRSLE DAKKQQNQELQEQLRSLEQLQKENKELRAE K K Q L R S 0 1 1 0 0 5 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1540.7958 A0A087WY61;K4DIE0;Q14980 Q14980 1625 1636 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.6209E-07 136.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 4 2 0.8393 0.96013 25.899 14 Median NaN NaN NaN 0 0 Median 0.87823 0.94447 12.841 2 0 Median 0.83992 1.0045 30.83 4 2 Median 1.0816 1.0441 7.6197 2 0 Median 0.72903 0.81868 18.213 4 0 Median 0.75177 0.6799 47.799 2 0 Median 88172000 46952000 41219000 0 0 0 3459000 1820500 1638500 35992000 19023000 16969000 4591400 2283800 2307600 38410000 20892000 17518000 5719400 2933500 2785900 18212 2905;77 18981 94802;94803;94804;94805;94806;94807;94808;94809;94810;94811;94812;94813;94814;94815 96527;96528;96529;96530;96531;96532;96533;96534;96535;96536;96537;96538;96539;96540 96529 14 KQQQVPVAGIR ADTMVQYMELFNKIRKQQQVPVAGIR____ NKIRKQQQVPVAGIR_______________ R K Q I R - 1 1 0 0 0 3 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 11 1 1222.7146 Q9H944 Q9H944 202 212 MED20 Mediator of RNA polymerase II transcription subunit 20 yes yes 3 0.00092968 48.981 By MS/MS 1 0.97806 1.0026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97806 1.0026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1369300 742550 626750 0 0 0 0 0 0 1369300 742550 626750 0 0 0 0 0 0 0 0 0 18213 3993 18982 94816 96541;96542 96541 2 KQQSIAGSADSKPIDVSR KAKEKIEKKGEKKEKKQQSIAGSADSKPID SIAGSADSKPIDVSRLDLRIGCIITARKHP K K Q S R L 2 1 0 2 0 2 0 1 0 2 0 2 0 0 1 4 0 0 0 1 0 0 18 2 1885.9858 Q12904 Q12904 137 154 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 3;4 0.0028051 26.474 By MS/MS By MS/MS By matching 2 2 2 0.95197 0.98778 13.591 6 Median 0.93297 0.98778 1.7385 2 0 Median 1.1075 1.2368 5.105 2 0 Median NaN NaN NaN 0 0 Median 0.93434 0.93463 3.7558 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7504300 3496500 4007800 3379800 1633800 1746000 3015000 1369000 1646100 0 0 0 1109500 493730 615770 0 0 0 0 0 0 18214 2768 18983 94817;94818;94819;94820;94821;94822 96543;96544;96545;96546 96545 4 KQSGYGGQTKPIFR GKDSLYAQGKRRYDRKQSGYGGQTKPIFRK RKQSGYGGQTKPIFRKKAKTTKKIVLRLEC R K Q F R K 0 1 0 0 0 2 0 3 0 1 0 2 0 1 1 1 1 0 1 0 0 0 14 2 1565.8314 J3KQN4;Q969Q0;P83881;H7BY91;H0Y3V9;H0Y5B4;H7BZ11 J3KQN4 80 93 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 3 0.033802 19.323 By matching By MS/MS 1 1 0.87387 0.90629 0.16284 2 Median 0.86316 0.90734 NaN 1 0 Median 0.88471 0.90525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2607000 1289600 1317400 1737700 889830 847850 869300 399780 469520 0 0 0 0 0 0 0 0 0 0 0 0 18215 1321 18984 94823;94824 96547 96547 1 KQSLGELIGTLNAAK SRKFFVGGNWKMNGRKQSLGELIGTLNAAK KQSLGELIGTLNAAKVPADTEVVCAPPTAY R K Q A K V 2 0 1 0 0 1 1 2 0 1 3 2 0 0 0 1 1 0 0 0 0 0 15 1 1541.8777 P60174 P60174 56 70 TPI1 Triosephosphate isomerase yes yes 2;3 3.0195E-10 166.62 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 6 2 2 1 1.0871 1.0538 23.243 15 Median 1.1996 1.1894 12.302 4 0 Median 1.0859 0.98389 26.179 6 0 Median 1.0386 1.0349 6.4977 2 0 Median 0.88759 0.79823 12.114 2 0 Median 1.2562 1.3294 NaN 1 0 Median NaN NaN NaN 0 0 Median 976590000 462750000 513840000 887550000 421890000 465660000 66651000 29860000 36791000 18921000 9381000 9540200 1737000 863850 873160 1727900 746000 981930 0 0 0 18216 2523 18985 94825;94826;94827;94828;94829;94830;94831;94832;94833;94834;94835;94836;94837;94838;94839 96548;96549;96550;96551;96552;96553;96554;96555;96556;96557;96558;96559;96560;96561;96562;96563;96564 96556 17 KQSLPATSIPTPASFK NEGSSTKCAACQNPRKQSLPATSIPTPASF QSLPATSIPTPASFKFGTSETSKTLKSGFE R K Q F K F 2 0 0 0 0 1 0 0 0 1 1 2 0 1 3 3 2 0 0 0 0 0 16 1 1671.9196 P49792 P49792 1507 1522 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 3.1628E-05 53.008 By matching By MS/MS By matching 1 2 1 0.72744 0.83104 23.155 4 Median NaN NaN NaN 0 0 Median 0.5397 0.53053 NaN 1 0 Median 0.72744 0.83104 3.3659 2 0 Median 0.84674 0.86024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16191000 8666500 7524000 0 0 0 323190 186330 136860 15271000 8178900 7092000 596460 301340 295120 0 0 0 0 0 0 18217 2401 18986 94840;94841;94842;94843 96565;96566 96565 2 KQSNPLLIHVDTK LKFIATLQYIVGRSRKQSNPLLIHVDTKAG SRKQSNPLLIHVDTKAGHGAGKPTAKVIEE R K Q T K A 0 0 1 1 0 1 0 0 1 1 2 2 0 0 1 1 1 0 0 1 0 0 13 1 1491.8409 A0A499FJL1;P48147 A0A499FJL1 599 611 PREP Prolyl endopeptidase yes no 3 0.029713 18.832 By MS/MS By matching 1 1 0.89271 0.87887 8.0826 2 Median 0.80347 0.83005 NaN 1 0 Median 0.99185 0.93056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4730400 2700600 2029800 2797500 1783500 1013900 1932900 917110 1015800 0 0 0 0 0 0 0 0 0 0 0 0 18218 478 18987 94844;94845 96567 96567 1 KQSTDEEVTSLAK LLQSTRIGMSVNAIRKQSTDEEVTSLAKSL IRKQSTDEEVTSLAKSLIKSWKKLLDGPST R K Q A K S 1 0 0 1 0 1 2 0 0 0 1 2 0 0 0 2 2 0 0 1 0 0 13 1 1434.7202 A0A1W2PPZ5;P23193;A0A1W2PRL9;E5RIS7;E5RJ93 A0A1W2PPZ5 55 67 TCEA1 Transcription elongation factor A protein 1 yes no 2;3 0.00094769 42.317 By matching By matching By MS/MS By MS/MS 2 1 2 2 0.96644 0.86057 11.215 7 Median 0.94399 0.88306 8.5662 2 0 Median 0.91933 0.83691 NaN 1 0 Median 0.94186 0.98758 20.507 2 1 Median 1.0077 0.89728 5.9083 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11538000 5531500 6006500 889600 494140 395460 523020 250030 272990 6068100 2841800 3226300 4057300 1945500 2111800 0 0 0 0 0 0 18219 341 18988 94846;94847;94848;94849;94850;94851;94852 96568;96569;96570;96571 96571 4 KQTALVELLK HADICTLPDTEKQIKKQTALVELLKHKPKA EKQIKKQTALVELLKHKPKATEEQLKTVME K K Q L K H 1 0 0 0 0 1 1 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 10 1 1141.7071 CON__P02769 CON__P02769 548 557 yes yes 2 0.00040001 115.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.0028812 0.0026502 NaN 1 Median 0.0028812 0.0026502 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 241600000 241080000 519060 181920000 181400000 519060 50043000 50043000 0 9637600 9637600 0 0 0 0 0 0 0 0 0 0 + 18220 746 18989 94853;94854;94855;94856;94857;94858;94859 96572;96573;96574;96575;96576;96577;96578;96579 96576 8 KQTIDNSQGAYQEAFDISK DYFRYLAEVACGDDRKQTIDNSQGAYQEAF DNSQGAYQEAFDISKKEMQPTHPIRLGLAL R K Q S K K 2 0 1 2 0 3 1 1 0 2 0 2 0 1 0 2 1 0 1 0 0 0 19 1 2142.0229 P27348 P27348 139 157 YWHAQ 14-3-3 protein theta yes yes 2;3 1.5133E-18 144.68 By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1.072 1.0383 9.8471 8 Median 1.081 1.0971 11.48 2 0 Median 1.0988 1.0022 14.154 3 0 Median 1.072 1.068 0.30887 2 0 Median 1.0565 0.95101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152510000 72682000 79832000 111170000 53326000 57843000 15640000 7326700 8313100 23414000 10939000 12476000 2290700 1090300 1200400 0 0 0 0 0 0 18221 2152 18990 94860;94861;94862;94863;94864;94865;94866;94867 96580;96581;96582;96583;96584;96585 96582 6 KQTIDNSQGAYQEAFDISKK DYFRYLAEVACGDDRKQTIDNSQGAYQEAF NSQGAYQEAFDISKKEMQPTHPIRLGLALN R K Q K K E 2 0 1 2 0 3 1 1 0 2 0 3 0 1 0 2 1 0 1 0 0 0 20 2 2270.1179 P27348 P27348 139 158 YWHAQ 14-3-3 protein theta yes yes 3;4 3.9884E-22 166.66 By MS/MS By MS/MS By MS/MS 1 2 2 1.0659 1.1256 19.988 5 Median 1.0659 1.1256 NaN 1 0 Median 0.8935 0.87434 10.697 2 1 Median 1.1283 1.2731 6.2068 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171340000 79094000 92245000 88876000 39294000 49582000 46929000 24126000 22803000 35533000 15673000 19860000 0 0 0 0 0 0 0 0 0 18222 2152 18991 94868;94869;94870;94871;94872 96586;96587;96588;96589;96590;96591;96592 96587 7 KQTPSDFLK ______________________________ ______________________________ R K Q L K Q 0 0 0 1 0 1 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 9 1 1062.571 P62312 P62312 5 13 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.0058502 61.679 By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.74381 0.59972 15.815 7 Median 0.76587 0.62836 6.3342 2 0 Median 0.73125 0.60825 29.35 2 0 Median 0.74381 0.54332 NaN 1 0 Median 0.57005 0.47813 NaN 1 0 Median 0.83815 0.59972 NaN 1 0 Median NaN NaN NaN 0 0 Median 40973000 21947000 19026000 7760200 4153500 3606700 11752000 5948400 5803700 14081000 7985500 6095500 647500 374770 272730 6732300 3484500 3247800 0 0 0 18223 2584 18992 94873;94874;94875;94876;94877;94878;94879 96593;96594 96593 2 KQTTLAFKPIK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K K Q I K K 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1276 1286 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.001476 47.844 By MS/MS By matching 1 1 0.85677 0.92842 9.3198 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75024 0.86921 NaN 1 0 Median 0.97844 0.99166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5416200 3328200 2088000 0 0 0 0 0 0 4352500 2886300 1466200 1063700 441930 621820 0 0 0 0 0 0 18224 1963 18993 94880;94881 96595;96596 96596 2 KQVEEIFNLK TPVKEDWNVRITKLRKQVEEIFNLKFAQAL ITKLRKQVEEIFNLKFAQALGLTEAVKVPY R K Q L K F 0 0 1 0 0 1 2 0 0 1 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1246.6921 P78347;A0A494C1K3;A0A494C0Q7 P78347 573 582 GTF2I General transcription factor II-I yes no 2;3 0.00017481 128.91 By matching By MS/MS By matching By matching 1 2 1 1 0.97675 0.91276 19.017 5 Median 1.0634 1.1239 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70447 0.81364 16.258 2 0 Median 1.2092 1.1518 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97675 0.88566 NaN 1 0 Median 30070000 16487000 13582000 2348600 1313200 1035400 0 0 0 25861000 14313000 11548000 1329900 587380 742520 0 0 0 529960 273970 255990 18225 2642 18994 94882;94883;94884;94885;94886 96597;96598;96599 96599 3 KQVEELFER EFNFEKWNARITDLRKQVEELFERKYAQAI RITDLRKQVEELFERKYAQAIKAKGPVTIP R K Q E R K 0 1 0 0 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 1 1176.6139 P78347;A0A494C1K3 P78347 363 371 GTF2I General transcription factor II-I yes no 2 0.00042332 99.442 By MS/MS 1 1.1083 1.2556 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1083 1.2556 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6543700 2733300 3810400 0 0 0 0 0 0 6543700 2733300 3810400 0 0 0 0 0 0 0 0 0 18226 2642 18995 94887 96600 96600 1 KQVEVFR ______________________________ VRLSGEARKQVEVFRQNLFQEAEEFLYRFL R K Q F R Q 0 1 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 7 1 904.51305 A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 A0A087X1Z3 15 21 PSME2 Proteasome activator complex subunit 2 yes no 2 0.071287 40.103 By MS/MS By matching 3 2 1.0856 1.0506 9.9796 5 Median 1.1195 1.1417 4.3559 3 0 Plateau 0.99257 0.96247 12.163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9154800 4570000 4584800 3625700 1811600 1814000 5529200 2758400 2770700 0 0 0 0 0 0 0 0 0 0 0 0 18227 125 18996 94888;94889;94890;94891;94892 96601 96601 1 KQVFDQYVK IVFDPRYLLLNPKERKQVFDQYVKTRAEEE LNPKERKQVFDQYVKTRAEEERREKKNKIM R K Q V K T 0 0 0 1 0 2 0 0 0 0 0 2 0 1 0 0 0 0 1 2 0 0 9 1 1153.6132 O14776;G3V220 O14776 703 711 TCERG1 Transcription elongation regulator 1 yes no 2 0.00077022 116.05 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0951 1.054 27.246 4 Median NaN NaN NaN 0 0 Median 1.9043 1.774 NaN 1 0 Median 0.93511 1.0829 NaN 1 0 Median 1.077 1.026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1135 0.99369 NaN 1 0 Median 26440000 13052000 13389000 0 0 0 4362300 1786900 2575300 12523000 6003300 6519200 5906000 3277200 2628800 0 0 0 3649500 1984200 1665300 18228 1494 18997 94893;94894;94895;94896 96602;96603;96604;96605 96603 4 KQVMGLITHTDSPYIR AFCLLYKLFTLKLTRKQVMGLITHTDSPYI QVMGLITHTDSPYIRALGFMYIRYTQPPTD R K Q I R A 0 1 0 1 0 1 0 1 1 2 1 1 1 0 1 1 2 0 1 1 0 0 16 1 1857.9771 Q5VTL8;A0A0A0MRN0 Q5VTL8 143 158 PRPF38B Pre-mRNA-splicing factor 38B yes no 3 0.00015119 44.252 By MS/MS 1 0.69627 0.74037 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69627 0.74037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18757000 8913400 9843300 0 0 0 0 0 0 18757000 8913400 9843300 0 0 0 0 0 0 0 0 0 18229 3111 18998 94897 96606 96606 1 KQVRPMLLVDDR EIFTSLTAARSLLERKQVRPMLLVDDRALP LERKQVRPMLLVDDRALPDFKGIQTSDPNA R K Q D R A 0 2 0 2 0 1 0 0 0 0 2 1 1 0 1 0 0 0 0 2 0 0 12 2 1468.8184 K7ER15;Q9H0R4;K7EJQ8;A0A1B0GXB1;K7EQD2;K7EMY7 K7ER15 86 97 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 3 0.036531 20.733 By MS/MS 1 0.97305 0.90115 NaN 1 Median NaN NaN NaN 0 0 Median 0.97305 0.90115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2649000 1343700 1305300 0 0 0 2649000 1343700 1305300 0 0 0 0 0 0 0 0 0 0 0 0 18230 1396 18999 94898 96607 96607 1 KQVSSHIQVLAR IARYIKLRTGKTRTRKQVSSHIQVLARRKS RTRKQVSSHIQVLARRKSRDFHSKLKDQTA R K Q A R R 1 1 0 0 0 2 0 0 1 1 1 1 0 0 0 2 0 0 0 2 0 0 12 1 1364.7888 H0YE88;P28347;H0YEJ9;H0YGS2;A0A0A0MRF3;Q53GI4;A0A1X7SBS4;Q15561;Q99594;Q15562;H0YG62 H0YE88 88 99 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 3 0.00011382 77.597 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1.2164 1.1938 14.094 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0215 1.0671 5.0593 3 0 Median 1.2026 1.1407 7.8674 2 0 Median 1.3002 1.3432 16.601 3 0 Median 1.3293 1.2033 2.5548 2 0 Median 28184000 12520000 15664000 0 0 0 0 0 0 10504000 4949800 5554100 5672100 2603300 3068700 6902600 2844000 4058700 5105700 2123300 2982300 18231 1178 19000 94899;94900;94901;94902;94903;94904;94905;94906;94907;94908 96608;96609;96610;96611;96612;96613;96614;96615;96616;96617 96615 10 KQVVNIPSFIVR HHARVLIRQRHIRVRKQVVNIPSFIVRLDS RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY R K Q V R L 0 1 1 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 0 3 0 0 12 1 1398.8347 P46781 P46781 139 150 RPS9 40S ribosomal protein S9 yes yes 2;3 4.5994E-05 85.813 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 3 3 1 3 3 1.0864 1.0767 51.503 17 Median 0.93332 0.94828 95.375 4 1 Median 1.0979 0.9837 3.3888 3 0 Median 1.0854 1.118 12.517 3 2 Median 1.0864 0.96173 NaN 1 0 Median 1.2484 1.1762 14.147 3 0 Plateau 2.1198 1.7019 25.555 3 0 Plateau 196550000 101500000 95046000 128200000 70259000 57941000 6203500 2829400 3374100 9690800 5005600 4685100 406790 165220 241570 47594000 21814000 25780000 4452100 1427400 3024700 18232 2345 19001 94909;94910;94911;94912;94913;94914;94915;94916;94917;94918;94919;94920;94921;94922;94923;94924;94925 96618;96619;96620;96621;96622;96623;96624;96625;96626;96627;96628;96629;96630;96631;96632;96633 96620 16 KQWLQEVK GARIAAAILNTPDLRKQWLQEVKVMADRII LNTPDLRKQWLQEVKVMADRIIGMRTQLVS R K Q V K V 0 0 0 0 0 2 1 0 0 0 1 2 0 0 0 0 0 1 0 1 0 0 8 1 1057.592 P00505 P00505 338 345 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0032666 114.28 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1919 1.1506 8.6754 4 Median 1.0921 1.0144 NaN 1 0 Median 1.3882 1.2514 NaN 1 0 Median 1.0489 1.143 NaN 1 0 Median 1.3007 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29128000 13494000 15634000 13404000 6678700 6725100 9872200 4026000 5846200 4976500 2427300 2549200 875090 361680 513410 0 0 0 0 0 0 18233 1823 19002 94926;94927;94928;94929 96634;96635;96636 96636 3 KQYDSFTFTASK RLEDPDGKVLYKEMKKQYDSFTFTASKNGT EMKKQYDSFTFTASKNGTYKFCFSNEFSTF K K Q S K N 1 0 0 1 0 1 0 0 0 0 0 2 0 2 0 2 2 0 1 0 0 0 12 1 1421.6827 A0A0A6YYA0;Q9Y3B3 A0A0A6YYA0 91 102 TMED7-TICAM2;TMED7 Transmembrane emp24 domain-containing protein 7 yes no 2 0.0056124 58.676 By MS/MS 1 0.52715 0.53587 NaN 1 Median 0.52715 0.53587 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11535000 7666400 3868600 11535000 7666400 3868600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18234 201 19003 94930 96637 96637 1 KQYDTYGEEGLK DLGAAYEVLSDSEKRKQYDTYGEEGLKDGH EKRKQYDTYGEEGLKDGHQSSHGDIFSHFF R K Q L K D 0 0 0 1 0 1 2 2 0 0 1 2 0 0 0 0 1 0 2 0 0 0 12 1 1429.6725 Q9UBS4 Q9UBS4 84 95 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 3 0.050563 13.404 By matching By MS/MS 1 1 1.4102 1.4045 0.73852 2 Median NaN NaN NaN 0 0 Median 1.551 1.4118 NaN 1 0 Median 1.2821 1.3972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1647800 782050 865710 0 0 0 541320 273410 267910 1106400 508640 597800 0 0 0 0 0 0 0 0 0 18235 4246 19004 94931;94932 96638 96638 1 KQYPISLVLAPTR EALRAMKENGRYGRRKQYPISLVLAPTREL RRKQYPISLVLAPTRELAVQIYEEARKFSY R K Q T R E 1 1 0 0 0 1 0 0 0 1 2 1 0 0 2 1 1 0 1 1 0 0 13 1 1484.8715 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 263 275 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.00035471 75.695 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 2 3 3 0.93013 0.90726 23.721 12 Median 0.65209 0.66039 NaN 1 1 Median 0.65033 0.60166 NaN 1 0 Median 0.92871 0.98571 3.0255 2 0 Median 0.90262 0.82761 12.527 2 0 Median 1.147 1.2717 17.616 3 0 Median 0.95497 0.8375 13.195 3 0 Median 21967000 11671000 10296000 2268400 1427800 840590 755880 460200 295690 12145000 6446400 5698600 619840 326920 292920 4961000 2401800 2559200 1217400 608150 609220 18236 263 19005 94933;94934;94935;94936;94937;94938;94939;94940;94941;94942;94943;94944 96639;96640;96641;96642;96643 96641 5 KRAEFTVETR RAYGPGIEPTGNMVKKRAEFTVETRSAGQG GNMVKKRAEFTVETRSAGQGEVLVYVEDPA K K R T R S 1 2 0 0 0 0 2 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 10 2 1235.6622 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 300 309 FLNA Filamin-A no no 3 0.00051088 64.439 By MS/MS By MS/MS By MS/MS 4 1 1 1.101 1.1525 10.703 6 Median 1.1428 1.1525 7.0477 4 0 Median 0.99672 0.96115 NaN 1 0 Median 1.0619 1.2761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13438000 6451900 6986100 8135700 3880800 4254900 4018500 1918000 2100500 1283800 653080 630670 0 0 0 0 0 0 0 0 0 18237 2088;3120 19006 94945;94946;94947;94948;94949;94950 96644;96645;96646;96647;96648;96649;96650;96651;96652 96652 9 KRDWEAIASR AKLDKLDGLRTGTKRKRDWEAIASRMEDYL TGTKRKRDWEAIASRMEDYLQLPDDYDTRA R K R S R M 2 2 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 10 2 1230.6469 P49750;F8VU51 P49750 2067 2076 YLPM1 YLP motif-containing protein 1 yes no 3 0.00019861 94.465 By matching By MS/MS By MS/MS 1 1 1 1.3374 1.6071 27.161 3 Plateau NaN NaN NaN 0 0 Median 1.1712 0.98465 NaN 1 0 Median 1.3374 1.6071 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4045 1.5414 NaN 1 0 Median NaN NaN NaN 0 0 Median 9773500 4127800 5645700 0 0 0 1917500 784000 1133500 4298400 1864000 2434400 0 0 0 3557500 1479800 2077800 0 0 0 18238 2395 19007 94951;94952;94953 96653;96654;96655 96654 2 KREDAITQQNTIQNEAVNLLDPGSSYLLQEPPR CLDEYEDDEAGQKERKREDAITQQNTIQNE LLDPGSSYLLQEPPRTVSGRYKSTTSVSEE R K R P R T 2 2 3 2 0 4 3 1 0 2 4 1 0 0 3 2 2 0 1 1 0 0 33 2 3736.902 Q96IZ0;H0YI16 Q96IZ0 188 220 PAWR PRKC apoptosis WT1 regulator protein yes no 4 0.018145 14.266 By MS/MS 1 0.50437 0.64705 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50437 0.64705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2271400 1282800 988630 0 0 0 0 0 0 2271400 1282800 988630 0 0 0 0 0 0 0 0 0 18239 3681 19008 94954 96656 96656 1 KREEAAAVPAAAPDDLALLK AACAGARKKRRSPPRKREEAAAVPAAAPDD AAVPAAAPDDLALLKNLRSEEQKKKNRKKL R K R L K N 7 1 0 2 0 0 2 0 0 0 3 2 0 0 2 0 0 0 0 1 0 0 20 2 2048.1266 Q86UE4;E5RJU9 Q86UE4 88 107 MTDH Protein LYRIC yes no 3 3.0427E-07 52.451 By MS/MS By matching 2 1 0.64387 0.70917 20.661 3 Median 0.58452 0.63827 14.898 2 0 Median 0.82047 0.86836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12000000 7154900 4844800 10703000 6320100 4383000 1296600 834730 461870 0 0 0 0 0 0 0 0 0 0 0 0 18240 3276 19009 94955;94956;94957 96657;96658 96658 2 KREEIPLDFK KLTPEEKNDVSENNRKREEIPLDFKTIDDH SENNRKREEIPLDFKTIDDHKTKENKQSLK R K R F K T 0 1 0 1 0 0 2 0 0 1 1 2 0 1 1 0 0 0 0 0 0 0 10 2 1273.703 Q99549;A0A0A0MT47 Q99549 467 476 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 0.001191 56.043 By MS/MS By MS/MS By MS/MS 1 1 1 0.6685 0.78778 12.657 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64106 0.79862 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6685 0.78778 NaN 1 0 Median 0.62113 0.63725 NaN 1 0 Median 10341000 5836000 4505500 0 0 0 0 0 0 1238500 691640 546830 0 0 0 8171700 4647800 3523900 931280 496560 434730 18241 3752 19010 94958;94959;94960 96659;96660;96661 96660 3 KREELSNVLAAMR KFIKKRVGTHIRAKRKREELSNVLAAMRKA KRKREELSNVLAAMRKAAAKKD________ R K R M R K 2 2 1 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 13 2 1515.8191 Q9Y3U8 Q9Y3U8 86 98 RPL36 60S ribosomal protein L36 yes yes 2;3 1.8525E-14 148.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 3 5 1.0615 1.1445 22.083 18 Median 0.95747 1.1029 23.22 4 1 Median 1.1074 1.142 26.189 4 0 Median 1.0726 1.253 4.0184 3 2 Plateau NaN NaN NaN 0 0 Median 0.78359 0.88804 37.984 2 0 Median 1.2352 1.1017 13.324 5 0 Median 369360000 169230000 200140000 91875000 42512000 49363000 53271000 23001000 30270000 77448000 36517000 40932000 0 0 0 25377000 12136000 13241000 121390000 55061000 66331000 18242 4434 19011;19012 94961;94962;94963;94964;94965;94966;94967;94968;94969;94970;94971;94972;94973;94974;94975;94976;94977;94978;94979;94980 96662;96663;96664;96665;96666;96667;96668;96669;96670;96671;96672;96673;96674;96675;96676;96677;96678;96679;96680;96681 96663 1983 20 KREGELTVAQGR GKLRAELDEVNKSAKKREGELTVAQGRVKD SAKKREGELTVAQGRVKDLESLFHRSEVEL K K R G R V 1 2 0 0 0 1 2 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 2 1342.7317 Q03252 Q03252 137 148 LMNB2 Lamin-B2 yes yes 3 0.036027 20.857 By MS/MS 1 0.77387 0.88547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77387 0.88547 NaN 1 0 Median NaN NaN NaN 0 0 Median 1583700 895880 687820 0 0 0 0 0 0 0 0 0 0 0 0 1583700 895880 687820 0 0 0 18243 2709 19013 94981 96682 96682 1 KREPEDEGEDDD EDEEELGEEERGQKRKREPEDEGEDDD___ QKRKREPEDEGEDDD_______________ R K R D D - 0 1 0 4 0 0 4 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 12 2 1432.559 P39687 P39687 238 249 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes yes 3 0.0031519 37.426 By MS/MS 2 0.9073 0.85805 6.9946 2 Median NaN NaN NaN 0 0 Median 0.9073 0.85805 6.9946 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1398200 670250 727990 0 0 0 1398200 670250 727990 0 0 0 0 0 0 0 0 0 0 0 0 18244 2282 19014 94982;94983 96683;96684;96685 96685 3 KRFDTEEEFK SPPIGDLQVFYKESKKRFDTEEEFKKRAYQ YKESKKRFDTEEEFKKRAYQCVVLLQGKNP K K R F K K 0 1 0 1 0 0 3 0 0 0 0 2 0 2 0 0 1 0 0 0 0 0 10 2 1327.6408 P54136 P54136 278 287 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.00021765 96.171 By MS/MS By MS/MS 1 1 1.2668 1.2856 1.2968 2 Median 1.1767 1.2738 NaN 1 0 Median 1.3639 1.2974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8844800 3487200 5357700 3679600 1783600 1896000 5165200 1703500 3461700 0 0 0 0 0 0 0 0 0 0 0 0 18245 2480 19015 94984;94985 96686;96687 96687 2 KRGHVFEESQVAGTPMFVVK CPEQVVGGIYGVLNRKRGHVFEESQVAGTP FEESQVAGTPMFVVKAYLPVNESFGFTADL R K R V K A 1 1 0 0 0 1 2 2 1 0 0 2 1 2 1 1 1 0 0 4 0 0 20 2 2245.1678 P13639 P13639 766 785 EEF2 Elongation factor 2 yes yes 3 0.00055807 29.444 By MS/MS 1 1.0565 1.2008 NaN 1 Median 1.0565 1.2008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5266800 2440500 2826300 5266800 2440500 2826300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18246 1992 19016 94986 96688 96688 1 KRGWDENVYYTVPLVR KDLQSREETRNAAWRKRGWDENVYYTVPLV RGWDENVYYTVPLVRHMESRIMIPLKISPL R K R V R H 0 2 1 1 0 0 1 1 0 0 1 1 0 0 1 0 1 1 2 3 0 0 16 2 1994.0374 Q9BPW8 Q9BPW8 253 268 NIPSNAP1 Protein NipSnap homolog 1 yes yes 3 6.1795E-06 84.046 By MS/MS By matching 1 1 0.82647 0.79667 59.761 2 Median 0.52037 0.5221 NaN 1 0 Median 1.3126 1.2156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19935000 13681000 6254100 19241000 13347000 5894700 693340 333990 359350 0 0 0 0 0 0 0 0 0 0 0 0 18247 3777 19017 94987;94988 96689 96689 1 KRHEMPPHIYAITDTAYR LPIYSEEIVEMYKGKKRHEMPPHIYAITDT EMPPHIYAITDTAYRSMMQDREDQSILCTG K K R Y R S 2 2 0 1 0 0 1 0 2 2 0 1 1 0 2 0 2 0 2 0 0 0 18 2 2198.1055 P35579;Q5BKV1 P35579 142 159 MYH9 Myosin-9 yes no 4 7.0828E-07 81.723 By MS/MS 2 0.90048 1.0216 2.5112 2 Median NaN NaN NaN 0 0 Median 0.90048 1.0216 2.5112 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13271000 6661400 6609200 0 0 0 13271000 6661400 6609200 0 0 0 0 0 0 0 0 0 0 0 0 18248 2244 19018;19019 94989;94990 96690;96691;96692 96692 987 3 KRLEAFLTQK LQKKLEELELDEQQRKRLEAFLTQKQKVGE DEQQRKRLEAFLTQKQKVGELKDDDFEKIS R K R Q K Q 1 1 0 0 0 1 1 0 0 0 2 2 0 1 0 0 1 0 0 0 0 0 10 2 1232.7241 P36507;Q02750 Q02750 48 57 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 3 0.00080839 60.167 By MS/MS By matching By matching By matching 1 1 1 1 1.0591 1.1259 20.165 4 Median 1.1125 1.1779 NaN 1 0 Median 1.3312 1.5912 NaN 1 0 Median 0.95985 1.0761 NaN 1 0 Median 1.0082 1.0085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9249900 4456900 4793000 5228200 2531900 2696300 579920 263010 316910 2255700 1044700 1210900 1186200 617300 568860 0 0 0 0 0 0 18249 2256;2700 19020 94991;94992;94993;94994 96693;96694 96694 2 KRPAPQQIQQVQQQAVQNR SVRPGLAQSGMDQSRKRPAPQQIQQVQQQA PQQIQQVQQQAVQNRNHNAKKKKMADKILP R K R N R N 2 2 1 0 0 8 0 0 0 1 0 1 0 0 2 0 0 0 0 2 0 0 19 2 2244.2199 Q96GM5;F8VZ70;F8VUB0;F8VW95 Q96GM5 101 119 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 3;4 7.3171E-19 118.21 By MS/MS By MS/MS 2 4 0.91269 0.83246 17.874 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69985 0.74402 0.70127 2 0 Median 1.0184 0.99051 16.625 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36517000 18913000 17604000 0 0 0 0 0 0 20255000 10869000 9386800 16261000 8044300 8217200 0 0 0 0 0 0 18250 3659 19021 94995;94996;94997;94998;94999;95000 96695;96696;96697;96698;96699;96700;96701;96702;96703;96704;96705 96704 11 KRPASMAVMEGDLVK SFHTGNDSDSGTLERKRPASMAVMEGDLVK KRPASMAVMEGDLVKKESFGVKLMDFQAHR R K R V K K 2 1 0 1 0 0 1 1 0 0 1 2 2 0 1 1 0 0 0 2 0 0 15 2 1630.8535 Q68EM7 Q68EM7 480 494 ARHGAP17 Rho GTPase-activating protein 17 yes yes 3 0.065739 11.375 By MS/MS By matching 1 1 0.83545 0.99548 1.8307 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80949 1.0084 NaN 1 0 Median 0.86224 0.98267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4279100 2389300 1889800 0 0 0 0 0 0 2643800 1457400 1186300 1635400 931880 703480 0 0 0 0 0 0 18251 3127 19022 95001;95002 96706 96706 1 KRPDEVPDDDEPAGPMK EIIILVVIIVVYEKRKRPDEVPDDDEPAGP PDEVPDDDEPAGPMKTNSTNNHKDKNLRQR R K R M K T 1 1 0 4 0 0 2 1 0 0 0 2 1 0 4 0 0 0 0 1 0 0 17 2 1894.8731 Q9Y639;H3BU51 Q9Y639 364 380 NPTN Neuroplastin yes no 3 3.2534E-05 49.559 By MS/MS By MS/MS 1 1 0.57866 0.58722 23.815 2 Median 0.45837 0.49621 NaN 1 0 Median 0.73052 0.69492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8308200 5755100 2553100 5089800 3703100 1386700 3218400 2052000 1166400 0 0 0 0 0 0 0 0 0 0 0 0 18252 4477 19023 95003;95004 96707;96708 96707 2 KRPEPSSDYDLSPAK YVENADGKVTVRRFRKRPEPSSDYDLSPAK KRPEPSSDYDLSPAKQEPKPFDRLQQLLPA R K R A K Q 1 1 0 2 0 0 1 0 0 0 1 2 0 0 3 3 0 0 1 0 0 0 15 2 1688.837 Q6W2J9;H7C2V9;A6NE70;H7BZ37;H7C231 Q6W2J9 1399 1413 BCOR BCL-6 corepressor yes no 3 0.0020475 34.277 By MS/MS By MS/MS 1 1 0.51917 0.63133 20.706 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41278 0.54535 NaN 1 0 Median 0.65299 0.73088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3670000 2528500 1141500 0 0 0 0 0 0 2715400 1968900 746460 954620 559580 395040 0 0 0 0 0 0 18253 3191 19024 95005;95006 96709;96710 96709 2 KRPLIVFDGSSTSTSIK IKNETKRSSTVDGLRKRPLIVFDGSSTSTS PLIVFDGSSTSTSIKVKKTENGDNDRLKPP R K R I K V 0 1 0 1 0 0 0 1 0 2 1 2 0 1 1 4 2 0 0 1 0 0 17 2 1835.0153 Q9BVC5;C9J4K0 Q9BVC5 98 114 C2orf49 Ashwin yes no 3 7.3001E-06 68.41 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.87256 0.95214 6.1383 6 Median 0.86845 0.89958 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87256 0.98254 1.4572 2 0 Median 0.99624 0.89155 8.4375 2 0 Median 0.81139 0.95795 NaN 1 0 Median NaN NaN NaN 0 0 Median 40767000 21882000 18885000 5801000 3635200 2165800 0 0 0 25545000 13616000 11928000 7329400 3602700 3726700 2091500 1027900 1063600 0 0 0 18254 3850 19025 95007;95008;95009;95010;95011;95012 96711;96712;96713;96714 96712 4 KRPNNLVIGR KKSDCSLFMFGSHNKKRPNNLVIGRMYDYH GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K K R G R M 0 2 2 0 0 0 0 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 2 1165.7044 Q9H7B2;Q5VXN0 Q9H7B2 98 107 RPF2 Ribosome production factor 2 homolog yes no 2 0.043079 42.599 By MS/MS 2 0.8688 0.96033 5.9225 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8688 0.96033 5.9225 2 0 Median NaN NaN NaN 0 0 Median 4632200 2397300 2234900 0 0 0 0 0 0 0 0 0 0 0 0 4632200 2397300 2234900 0 0 0 18255 3980 19026 95013;95014 96715 96715 1 KRPPLQEYVR YYYCNPPPAEKTVKKKRPPLQEYVRKLLYK KTVKKKRPPLQEYVRKLLYKDLSKVTTEKV K K R V R K 0 2 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 0 0 10 2 1284.7303 Q9HAU5 Q9HAU5 767 776 UPF2 Regulator of nonsense transcripts 2 yes yes 3 0.023876 25.437 By MS/MS 1 0.89944 0.90095 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89944 0.90095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 596750 321550 275200 0 0 0 0 0 0 0 0 0 596750 321550 275200 0 0 0 0 0 0 18256 4011 19027 95015 96716 96716 1 KRPSWFTQN PSEQDQGKRIIERDRKRPSWFTQN______ IIERDRKRPSWFTQN_______________ R K R Q N - 0 1 1 0 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 9 2 1162.5883 Q9BYC8 Q9BYC8 180 188 MRPL32 39S ribosomal protein L32, mitochondrial yes yes 2 0.010353 69.825 By MS/MS 1 1.4915 1.3168 NaN 1 Median NaN NaN NaN 0 0 Median 1.4915 1.3168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8670100 3881200 4788900 0 0 0 8670100 3881200 4788900 0 0 0 0 0 0 0 0 0 0 0 0 18257 3887 19028 95016 96717 96717 1 KRPVPDPDLQR NERDSSEPRDEGGGRKRPVPDPDLQRRAGS GGGRKRPVPDPDLQRRAGSGTGVGAMLARG R K R Q R R 0 2 0 2 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 1 0 0 11 2 1319.731 K7EQ21;Q9P0U4;K7EJR0;K7EQZ1 K7EQ21 110 120 CXXC1 CXXC-type zinc finger protein 1 yes no 3 0.00024085 63.624 By MS/MS 1 0.4836 0.54253 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4836 0.54253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748500 1671900 1076600 0 0 0 0 0 0 2748500 1671900 1076600 0 0 0 0 0 0 0 0 0 18258 1395 19029 95017 96718 96718 1 KRVEGPGSLGLEESGSR RFRNMVQTAVVPVKKKRVEGPGSLGLEESG VEGPGSLGLEESGSRRMQNFAFSGGLYGGL K K R S R R 0 2 0 0 0 0 3 4 0 0 2 1 0 0 1 3 0 0 0 1 0 0 17 2 1756.9068 Q12972;A0A0A0MT09 Q12972 236 252 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 3 0.00012942 44.005 By MS/MS By MS/MS 1 1 0.85587 0.92175 11.523 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77949 1 NaN 1 0 Median 0.93973 0.84963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6391900 3243500 3148300 0 0 0 0 0 0 5065800 2619500 2446300 1326100 624030 702050 0 0 0 0 0 0 18259 2775 19030 95018;95019 96719;96720;96721 96720 3 KRVETSEHFR ALTRESTRGSRRTPRKRVETSEHFRIDGPV RRTPRKRVETSEHFRIDGPVISESTPIAET R K R F R I 0 2 0 0 0 0 2 0 1 0 0 1 0 1 0 1 1 0 0 1 0 0 10 2 1287.6684 P42167 P42167 260 269 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 3 0.026198 24.855 By MS/MS By matching By MS/MS By matching 2 1 3 1 1.0585 1.1748 29.5 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.262 1.3939 24.193 2 0 Median 1.9469 1.9916 NaN 1 0 Median 0.88357 1.011 10.405 3 0 Median 1.9624 1.7025 NaN 1 0 Median 1829200 890060 939160 0 0 0 0 0 0 429030 192620 236400 119540 47397 72141 1141600 599880 541680 139100 50161 88935 18260 2307 19031 95020;95021;95022;95023;95024;95025;95026 96722;96723;96724;96725 96725 4 KRWENFIHSENR DLDPHFNDILGQHSRKRWENFIHSENRHLV HSRKRWENFIHSENRHLVSPEALDLLDKLL R K R N R H 0 2 2 0 0 0 2 0 1 1 0 1 0 1 0 1 0 1 0 0 0 0 12 2 1614.8015 P19784;H3BSA1;H3BV19 P19784 280 291 CSNK2A2 Casein kinase II subunit alpha yes no 3;4 0.00042913 53.252 By MS/MS By MS/MS 1 2 1.0511 1.0067 26.21 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0511 1.3485 NaN 1 0 Median 0.99217 0.89704 16.313 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120800 2676800 3444000 0 0 0 0 0 0 1333500 631680 701820 4787300 2045100 2742200 0 0 0 0 0 0 18261 2069 19032 95027;95028;95029 96726;96727;96728;96729 96727 4 KSADTLWDIQK VINQKLKDDEVAQLKKSADTLWDIQKDLKD AQLKKSADTLWDIQKDLKDL__________ K K S Q K D 1 0 0 2 0 1 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 0 11 1 1303.6772 P07195 P07195 319 329 LDHB L-lactate dehydrogenase B chain yes yes 2;3 0.00016025 125.75 By MS/MS By MS/MS By matching 2 2 1 1.0712 0.96467 22.322 5 Median 0.9536 0.92365 29.107 2 0 Median 1.0221 0.92039 6.6447 2 0 Median 1.2705 1.3363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73049000 39688000 33361000 52275000 27842000 24433000 19447000 11267000 8180400 1325900 578560 747330 0 0 0 0 0 0 0 0 0 18262 1880 19033 95030;95031;95032;95033;95034 96730;96731;96732;96733 96733 4 KSADTLWGIQK LVKVTLTSEEEARLKKSADTLWGIQKELQF ARLKKSADTLWGIQKELQF___________ K K S Q K E 1 0 0 1 0 1 0 1 0 1 1 2 0 0 0 1 1 1 0 0 0 0 11 1 1245.6717 P00338 P00338 318 328 LDHA L-lactate dehydrogenase A chain yes yes 2;3 0.00019658 87.298 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1897 1.1248 15.819 7 Median 1.2492 1.2079 4.0396 2 0 Median 1.1417 1.0282 18.295 2 0 Median 1.0699 1.1248 NaN 1 0 Median 1.0446 0.91726 18.393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103590000 45724000 57864000 83059000 35346000 47713000 17938000 9204200 8734200 1470600 641320 829270 1119600 531990 587560 0 0 0 0 0 0 18263 1813 19034 95035;95036;95037;95038;95039;95040;95041 96734;96735;96736;96737;96738;96739;96740;96741 96739 8 KSAEFLLHMLK AQAKQWGWTQGRWPKKSAEFLLHMLKNAES RWPKKSAEFLLHMLKNAESNAELKGLDVDS K K S L K N 1 0 0 0 0 0 1 0 1 0 3 2 1 1 0 1 0 0 0 0 0 0 11 1 1315.7322 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 86 96 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2;3 0.00010955 100.93 By MS/MS By MS/MS By matching By matching By MS/MS By matching 3 3 3 1 5 2 1.1819 1.1963 15.298 17 Median 1.1969 1.2113 12.938 3 0 Plateau 1.1409 1.0393 9.8565 3 0 Median 0.99941 1.0106 4.7478 3 0 Median 1.4567 1.31 NaN 1 0 Median 1.2153 1.3039 16.368 5 1 Median 1.6645 1.4363 15.13 2 0 Median 473980000 218050000 255920000 365850000 168150000 197700000 32962000 15305000 17657000 10879000 5441600 5437300 784720 387850 396860 52545000 24271000 28274000 10958000 4498700 6459600 18264 67 19035;19036 95042;95043;95044;95045;95046;95047;95048;95049;95050;95051;95052;95053;95054;95055;95056;95057;95058 96742;96743;96744;96745;96746;96747;96748;96749;96750;96751 96744 27 10 KSAEIDSDDTGGSAAQK NLRKLFVQDLATRVKKSAEIDSDDTGGSAA AEIDSDDTGGSAAQKQKISFLENNLEQLTK K K S Q K Q 3 0 0 3 0 1 1 2 0 1 0 2 0 0 0 3 1 0 0 0 0 0 17 1 1678.7646 P33176 P33176 813 829 KIF5B Kinesin-1 heavy chain yes yes 3 0.00075009 34.094 By MS/MS 1 1.1223 1.0496 NaN 1 Median NaN NaN NaN 0 0 Median 1.1223 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2142000 940000 1202000 0 0 0 2142000 940000 1202000 0 0 0 0 0 0 0 0 0 0 0 0 18265 2221 19037 95059 96752;96753 96753 2 KSAEPSANTTLVSETEEEGSVPAFGAAAK TGKTVANLLSGKSPRKSAEPSANTTLVSET TEEEGSVPAFGAAAKPGMVSAGQADSSSED R K S A K P 6 0 1 0 0 0 5 2 0 0 1 2 0 1 2 4 3 0 0 2 0 0 29 1 2877.388 E7ETY2;A0A3B3IS06;H0Y8Y7;A0A2R8Y857;Q13428 Q13428 159 187 TCOF1 Treacle protein no no 3 5.1341E-09 40.454 By MS/MS By matching 1 1 0.67682 0.70213 9.1871 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56854 0.65796 NaN 1 0 Median 0.80571 0.74925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10909000 6637300 4272200 0 0 0 0 0 0 10606000 6486300 4119300 303860 150960 152900 0 0 0 0 0 0 18266 2816;891 19038 95060;95061 96754;96755 96754 2 KSAVADKHELLSLASSNHLGK KNSHLINVLMWELEKKSAVADKHELLSLAS KHELLSLASSNHLGKNLQLLMDRVDEMSQD K K S G K N 3 0 1 1 0 0 1 1 2 0 4 3 0 0 0 4 0 0 0 1 0 0 21 2 2204.1913 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 235 255 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 4 0.024902 14.326 By matching By MS/MS By matching 1 1 1 1.1219 1.2163 19.928 3 Median 0.84809 0.86964 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1219 1.2391 NaN 1 0 Median 1.2922 1.2163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16497000 7673600 8823600 9820400 4418900 5401500 0 0 0 6106200 3009300 3096900 570550 245470 325080 0 0 0 0 0 0 18267 584 19039 95062;95063;95064 96756 96756 1 KSDGIYIINLK GTNLDFQMEQYIYKRKSDGIYIINLKRTWE IYKRKSDGIYIINLKRTWEKLLLAARAIVA R K S L K R 0 0 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 11 1 1262.7234 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 42 52 RPSA 40S ribosomal protein SA yes no 2;3 2.23E-21 195.27 By MS/MS By MS/MS By MS/MS 2 5 1 1.1117 1.0127 45.204 8 Median 1.1739 1.0868 8.7109 2 0 Median 1.1169 1.0036 12.12 5 0 Median 0.28004 0.29215 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132140000 66566000 65572000 61240000 28225000 33015000 54914000 24998000 29916000 15985000 13343000 2641600 0 0 0 0 0 0 0 0 0 18268 232 19040 95065;95066;95067;95068;95069;95070;95071;95072 96757;96758;96759;96760;96761;96762;96763;96764;96765;96766 96763 10 KSDGIYIINLKR GTNLDFQMEQYIYKRKSDGIYIINLKRTWE YKRKSDGIYIINLKRTWEKLLLAARAIVAI R K S K R T 0 1 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 12 2 1418.8245 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 42 53 RPSA 40S ribosomal protein SA yes no 3 0.00017736 75.739 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0718 1.0499 27.106 6 Median 0.83036 0.86958 20.847 2 0 Median 1.2343 1.2002 13.114 2 0 Median NaN NaN NaN 0 0 Median 1.5082 1.5087 NaN 1 0 Median 0.69341 0.80823 NaN 1 0 Median NaN NaN NaN 0 0 Median 28289000 14563000 13726000 16856000 8768100 8087700 2372900 868970 1503900 0 0 0 4228300 1933100 2295200 4832000 2992700 1839300 0 0 0 18269 232 19041 95073;95074;95075;95076;95077;95078 96767;96768;96769;96770 96768 4 KSDGKIDVSIEAASGGK GFKFKLNTKVTGATKKSDGKIDVSIEAASG DGKIDVSIEAASGGKAEVITCDVLLVCIGR K K S G K A 2 0 0 2 0 0 1 3 0 2 0 3 0 0 0 3 0 0 0 1 0 0 17 2 1660.8632 E9PEX6;P09622 E9PEX6 261 277 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 3 0.018371 20.368 By MS/MS 1 1.3481 1.3113 NaN 1 Median 1.3481 1.3113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3984100 1786300 2197700 3984100 1786300 2197700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18270 915 19042 95079 96771;96772 96771 2 KSDIDEIVLVGGSTR TMKPVQKVLEDSDLKKSDIDEIVLVGGSTR KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K K S T R I 0 1 0 2 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 2 0 0 15 1 1587.8468 P11021 P11021 353 367 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 9.6189E-14 176.08 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 3 1.1739 1.171 11.638 15 Median 1.1685 1.1877 6.0591 6 2 Median 1.1602 1.1321 6.5004 4 0 Median 0.93186 0.98901 20.27 2 0 Median 1.3871 1.2719 7.5988 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137270000 60995000 76273000 89211000 40384000 48827000 33629000 13730000 19899000 11850000 5773200 6077000 2578100 1107500 1470600 0 0 0 0 0 0 18271 1948 19043 95080;95081;95082;95083;95084;95085;95086;95087;95088;95089;95090;95091;95092;95093;95094 96773;96774;96775;96776;96777;96778;96779;96780;96781;96782;96783;96784;96785 96773 13 KSDLFQDDLYPDTAGPEAALEAEEWVSGR LHERKCEPIVMTVPRKSDLFQDDLYPDTAG GPEAALEAEEWVSGRDADPILISLREAYVP R K S G R D 4 1 0 4 0 1 4 2 0 0 3 1 0 1 2 2 1 1 1 1 0 0 29 1 3208.4837 Q9BR76 Q9BR76 355 383 CORO1B Coronin-1B yes yes 3 0.033856 11.001 By MS/MS 2 0.54403 0.57708 29.171 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54403 0.57708 29.171 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2368500 1450700 917820 0 0 0 0 0 0 2368500 1450700 917820 0 0 0 0 0 0 0 0 0 18272 3792 19044 95095;95096 96786 96786 1 KSDLIQDEALRR KAYCPQIGCSHTDIRKSDLIQDEALRRAIE DIRKSDLIQDEALRRAIENHNKKRHRHSE_ R K S R R A 1 2 0 2 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 2 1442.7841 E5RFJ1;Q96MF7 E5RFJ1 162 173 NSMCE2 E3 SUMO-protein ligase NSE2 yes no 3 0.00050143 51.841 By MS/MS By matching 1 1 1.3081 1.3666 35.989 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0358 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.652 1.7626 NaN 1 0 Median 2982400 1253800 1728600 0 0 0 0 0 0 0 0 0 2266700 1013200 1253500 0 0 0 715660 240570 475090 18273 834 19045 95097;95098 96787 96787 1 KSDRPVYEGPSMFGGER SSSRRGGFDRPSYDRKSDRPVYEGPSMFGG DRPVYEGPSMFGGERRTYPEERMPLPAPSL R K S E R R 0 2 0 1 0 0 2 3 0 0 0 1 1 1 2 2 0 0 1 1 0 0 17 2 1910.8945 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1769 1785 YLPM1 YLP motif-containing protein 1 yes no 3 6.4819E-08 94.569 By MS/MS By matching 1 1 0.642 0.73728 38.46 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80528 0.9677 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51182 0.56173 NaN 1 0 Median NaN NaN NaN 0 0 Median 16804000 8607300 8196800 0 0 0 0 0 0 11079000 5799700 5279400 0 0 0 5725000 2807600 2917400 0 0 0 18274 2395 19046 95099;95100 96788;96789 96788 2 KSDVEAIFSK NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K K S S K Y 1 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 0 0 0 1 0 0 10 1 1122.5921 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1;G3V4M8;G3V2H6 B2R5W2 30 39 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 6.8458E-05 136.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 6 7 1.1104 1.1006 17.343 18 Median NaN NaN NaN 0 0 Median 1.434 1.2895 NaN 1 0 Median 1.036 1.0947 0.96825 3 0 Median 1.2366 1.1012 NaN 1 0 Median 1.056 1.1398 9.2356 6 1 Median 1.162 1.0061 26.049 7 0 Median 969610000 464410000 505200000 0 0 0 19809000 7469200 12340000 48703000 24299000 24404000 22678000 10126000 12552000 729270000 359120000 370150000 149140000 63393000 85749000 18275 582 19047 95101;95102;95103;95104;95105;95106;95107;95108;95109;95110;95111;95112;95113;95114;95115;95116;95117;95118 96790;96791;96792;96793;96794;96795;96796;96797;96798;96799;96800;96801;96802;96803;96804;96805;96806;96807;96808;96809;96810;96811;96812;96813;96814 96793 25 KSDVEDHSVHLLFSANR RSTEIGKLLSSYLQKKSDVEDHSVHLLFSA DVEDHSVHLLFSANRWEQVPLIKEKLSQGV K K S N R W 1 1 1 2 0 0 1 0 2 0 2 1 0 1 0 3 0 0 0 2 0 0 17 1 1952.9704 P23919;H7BZ20;H7C312;G5E9E9;H7C3A4 P23919 60 76 DTYMK Thymidylate kinase yes no 4 0.0015494 44.662 By MS/MS 1 0.72718 0.75787 NaN 1 Median 0.72718 0.75787 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23744000 11986000 11758000 23744000 11986000 11758000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18276 2120 19048 95119 96815 96815 1 KSDVETIFSK NSRVFIGNLNTALVKKSDVETIFSKYGRVA TALVKKSDVETIFSKYGRVAGCSVHKGYAF K K S S K Y 0 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 10 1 1152.6027 Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2 Q9UKM9 35 44 RALY RNA-binding protein Raly yes no 2 0.00023348 130.41 By matching By MS/MS By MS/MS 1 3 1 1.2256 1.0348 25.182 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.234 1.0623 NaN 1 0 Median 0.92072 0.982 35.588 3 0 Median 1.2256 1.0348 NaN 1 0 Median 112790000 55563000 57229000 0 0 0 0 0 0 0 0 0 1397800 735540 662220 81101000 40842000 40259000 30294000 13986000 16308000 18277 4313 19049 95120;95121;95122;95123;95124 96816;96817;96818;96819 96816 4 KSEAEFRDYPPVLR ELVDNELAILYMNSKKSEAEFRDYPPVLRQ KKSEAEFRDYPPVLRQAVSLARRIQDPLIE K K S L R Q 1 2 0 1 0 0 2 0 0 0 1 1 0 1 2 1 0 0 1 1 0 0 14 2 1705.8788 Q7KZ85 Q7KZ85 898 911 SUPT6H Transcription elongation factor SPT6 yes yes 3 0.055227 14.084 By MS/MS By matching By matching 1 1 1 0.82049 0.90049 55.415 3 Median 2.0524 2.094 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61338 0.7371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82049 0.90049 NaN 1 0 Median NaN NaN NaN 0 0 Median 18533000 8381900 10151000 6778700 2300900 4477800 0 0 0 6895500 3697000 3198500 0 0 0 4859000 2383900 2475100 0 0 0 18278 3213 19050 95125;95126;95127 96820 96820 1 KSEAPSYIAVPDPSVLK SPKSSPHEVKFQMQRKSEAPSYIAVPDPSV EAPSYIAVPDPSVLKQGFSKDPSTWSVDEV R K S L K Q 2 0 0 1 0 0 1 0 0 1 1 2 0 0 3 3 0 0 1 2 0 0 17 1 1799.9669 Q9UQR0 Q9UQR0 605 621 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.0043238 25.508 By MS/MS 1 0.63753 0.71553 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63753 0.71553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6375500 4055800 2319700 0 0 0 0 0 0 6375500 4055800 2319700 0 0 0 0 0 0 0 0 0 18279 4363 19051 95128 96821;96822 96821 2 KSEDGTPAEDGTPAATGGSQPPSMGR KKKGFLPETKKRKKRKSEDGTPAEDGTPAA TPAATGGSQPPSMGRKKRNRTKAKVPAQAN R K S G R K 3 1 0 2 0 1 2 5 0 0 0 1 1 0 4 3 3 0 0 0 0 0 26 1 2500.1136 Q9BQG0;I3L1L3 Q9BQG0 1185 1210 MYBBP1A Myb-binding protein 1A yes no 3 8.3841E-26 82.639 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.54738 0.55072 12.631 5 Median NaN NaN NaN 0 0 Median 0.74312 0.69806 NaN 1 0 Median 0.52087 0.59015 NaN 1 0 Median 0.56008 0.53946 2.9213 2 1 Median 0.44676 0.50506 NaN 1 0 Median NaN NaN NaN 0 0 Median 18411000 13249000 5161800 0 0 0 4319700 3063400 1256200 7518000 5972200 1545800 2881600 1881300 1000300 3692000 2332400 1359500 0 0 0 18280 3789 19052 95129;95130;95131;95132;95133 96823;96824;96825;96826;96827;96828 96824 6 KSEEEIDFLR YQFQSFSQYRCKTAKKSEEEIDFLRSNPKI CKTAKKSEEEIDFLRSNPKIWNVHSVLNVL K K S L R S 0 1 0 1 0 0 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1264.6299 B0QY89;Q9Y262;B0QY90 B0QY89 250 259 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2;3 0.0014675 55.567 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 2 3 1 1 1 0.90516 0.90738 146.38 12 Median 0.90516 0.90738 210.14 4 0 Median 0.58009 0.5293 107.92 2 0 Median 0.97085 1.0811 17.786 3 0 Plateau 1.3284 1.218 NaN 1 0 Median 0.038281 0.042119 NaN 1 0 Median 1.4742 1.3034 NaN 1 0 Median 163090000 125770000 37318000 116240000 89080000 27162000 21877000 15163000 6714300 3509100 1863500 1645600 300240 117760 182480 20905000 19458000 1446900 258830 91975 166860 18281 554 19053 95134;95135;95136;95137;95138;95139;95140;95141;95142;95143;95144;95145 96829;96830;96831;96832;96833;96834;96835 96830 7 KSEEVFQLQEQINK ELELKVSSTTSELTKKSEEVFQLQEQINKQ KKSEEVFQLQEQINKQGLEIESLKTVSHEA K K S N K Q 0 0 1 0 0 3 3 0 0 1 1 2 0 1 0 1 0 0 0 1 0 0 14 1 1718.8839 Q14789;E7EU81 Q14789 1335 1348 GOLGB1 Golgin subfamily B member 1 yes no 3 8.2814E-05 71.279 By MS/MS 1 0.98351 1.071 NaN 1 Median 0.98351 1.071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18051000 8823300 9227700 18051000 8823300 9227700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18282 2900 19054 95146 96836 96836 1 KSEHLSVRPQTALEENETQK VGEARTQHGGSHVSRKSEHLSVRPQTALEE SVRPQTALEENETQKEVPQDQHLEAPADQS R K S Q K E 1 1 1 0 0 2 4 0 1 0 2 2 0 0 1 2 2 0 0 1 0 0 20 2 2323.1768 Q9Y3D9 Q9Y3D9 150 169 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 4 9.2474E-06 44.089 By matching By MS/MS By matching 1 1 1 1.1568 1.0525 21.305 3 Median 0.69455 0.73955 NaN 1 0 Median 1.2139 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1568 1.085 NaN 1 0 Median 7877600 4055400 3822200 3901000 2313400 1587600 2663200 1018500 1644700 0 0 0 0 0 0 0 0 0 1313500 723570 589910 18283 4424 19055 95147;95148;95149 96837;96838 96838 2 KSEIEYYAMLAK KAKLVILANNCPALRKSEIEYYAMLAKTGV ALRKSEIEYYAMLAKTGVHHYSGNNIELGT R K S A K T 2 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 2 0 0 0 12 1 1444.7272 E5RI99;P62888 E5RI99 57 68 RPL30 60S ribosomal protein L30 yes no 2;3 8.5663E-10 178.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 3 2 2 1.1073 1.0352 12.262 17 Median 1.0712 1.0349 8.4377 6 0 Median 1.1761 1.0196 8.4997 4 0 Median 1.0284 1.0319 15.57 3 0 Median NaN NaN NaN 0 0 Median 1.3123 1.3136 17.674 2 0 Median 1.2208 1.0473 6.7847 2 0 Median 418380000 200220000 218160000 169320000 81718000 87600000 136000000 63935000 72065000 88819000 42769000 46050000 0 0 0 10226000 4604600 5621300 14016000 7193000 6823400 18284 849 19056;19057 95150;95151;95152;95153;95154;95155;95156;95157;95158;95159;95160;95161;95162;95163;95164;95165;95166 96839;96840;96841;96842;96843;96844;96845;96846;96847;96848;96849;96850;96851;96852;96853;96854;96855;96856;96857;96858;96859;96860 96857 307 22 KSEIQTLKEEIEQSLTK VNSKFDTIYQILLKKKSEIQTLKEEIEQSL EIQTLKEEIEQSLTKRDEFEFLEKASKLRG K K S T K R 0 0 0 0 0 2 4 0 0 2 2 3 0 0 0 2 2 0 0 0 0 0 17 2 2003.0787 Q14258;A0A3B3IUA7 Q14258 285 301 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 3 0.00060987 36.593 By MS/MS 2 0.98394 0.98402 39.576 2 Median NaN NaN NaN 0 0 Median 0.98394 0.98402 39.576 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11461000 4688600 6772400 0 0 0 11461000 4688600 6772400 0 0 0 0 0 0 0 0 0 0 0 0 18285 2870 19058 95167;95168 96861;96862 96861 2 KSEKPLENGTGFQAQDISGQK DGFKFGISEPGNQEKKSEKPLENGTGFQAQ ENGTGFQAQDISGQKNGRGVIFGQTSSTFT K K S Q K N 1 0 1 1 0 3 2 3 0 1 1 3 0 1 1 2 1 0 0 0 0 0 21 2 2261.1288 P49792 P49792 1911 1931 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3;4 1.2791E-06 44.238 By MS/MS By MS/MS 3 3 0.74608 0.91253 38.193 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7326 0.90957 33.589 3 0 Median 0.75982 0.91549 45.761 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26976000 14981000 11995000 0 0 0 0 0 0 21939000 12163000 9776300 5036600 2817900 2218700 0 0 0 0 0 0 18286 2401 19059 95169;95170;95171;95172;95173;95174 96863;96864;96865;96866;96867;96868;96869 96865 7 KSELVVEVK CRRSGKQEITLPPSRKSELVVEVKSDKLPE TLPPSRKSELVVEVKSDKLPEEMGLLQGSS R K S V K S 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 0 3 0 0 9 1 1029.607 P43121 P43121 605 613 MCAM Cell surface glycoprotein MUC18 yes yes 2 0.0052766 63.216 By matching By MS/MS 2 2 1.076 1.0709 36.725 4 Median 1.076 1.0709 0.68273 2 0 Median 1.411 1.2687 61.305 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7468500 3725200 3743300 2302300 1193100 1109200 5166200 2532100 2634100 0 0 0 0 0 0 0 0 0 0 0 0 18287 2322 19060 95175;95176;95177;95178 96870 96870 1 KSEVNDKNHEMEEIR TMAQLQDLKNQHLAKKSEVNDKNHEMEEIR KSEVNDKNHEMEEIRKKLGGANKEMTHLQK K K S I R K 0 1 2 1 0 0 4 0 1 1 0 2 1 0 0 1 0 0 0 1 0 0 15 2 1856.8687 Q14683;G8JLG1 Q14683 881 895 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3;4 0.00010385 55.173 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 0.96749 1.1098 27.496 10 Median 1.1729 1.2398 NaN 1 0 Median 1.4324 1.4191 6.4049 2 0 Median 0.64595 0.73604 26.706 2 0 Median 1.1577 1.2958 7.6213 2 0 Median 0.7931 0.93461 7.0988 3 0 Median NaN NaN NaN 0 0 Median 16523000 7902000 8621300 979330 402490 576840 5075200 2174400 2900800 2826400 1447200 1379200 1607100 687140 919960 6035400 3190800 2844600 0 0 0 18288 2889 19061 95179;95180;95181;95182;95183;95184;95185;95186;95187;95188 96871;96872;96873;96874;96875;96876;96877;96878;96879;96880;96881;96882 96878 12 KSFLHEQEENVVK ATSSGPILREEFEARKSFLHEQEENVVKIQ ARKSFLHEQEENVVKIQAFWKGYKQRKEYM R K S V K I 0 0 1 0 0 1 3 0 1 0 1 2 0 1 0 1 0 0 0 2 0 0 13 1 1585.81 E7EWC2;F5H7S7;Q13576;D6R939;E9PDT6 E7EWC2 634 646 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 3 0.075164 7.2019 By MS/MS By matching 1 1 1.5766 1.5743 85.017 2 Median 0.85628 0.86299 NaN 1 0 Median 2.9027 2.8719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3214600 1869100 1345500 2680100 1757800 922240 534470 111240 423230 0 0 0 0 0 0 0 0 0 0 0 0 18289 901 19062 95189;95190 96883 96883 1 KSFYSSHYAR SRQPEYRDMRDGFRRKSFYSSHYARERSPY DGFRRKSFYSSHYARERSPYKRDNTFFRES R K S A R E 1 1 0 0 0 0 0 0 1 0 0 1 0 1 0 3 0 0 2 0 0 0 10 1 1244.5938 F8W0Q9;Q8NEY8;F8WF16;B7Z8L1;F8W6A0;F8VPY7;F8VWU8 F8W0Q9 127 136 PPHLN1 Periphilin-1 yes no 3 0.023372 23.376 By MS/MS 2 0.89659 0.94708 34.2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89659 0.94708 34.2 2 0 Median NaN NaN NaN 0 0 Median 2498700 1256800 1241900 0 0 0 0 0 0 0 0 0 0 0 0 2498700 1256800 1241900 0 0 0 18290 1080 19063 95191;95192 96884;96885 96884 2 KSGVGNIFIK KPVRIMWSQRDPSLRKSGVGNIFIKNLDKS DPSLRKSGVGNIFIKNLDKSIDNKALYDTF R K S I K N 0 0 1 0 0 0 0 2 0 2 0 2 0 1 0 1 0 0 0 1 0 0 10 1 1061.6233 P11940;E7EQV3;A0A087WTT1;Q4VXU2;E5RGH3;E5RJB9;E5RH24;Q96DU9 P11940 95 104 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 2 0.0010116 97.565 By matching By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1 1.333 1.3617 21.394 8 Median 1.2694 1.2534 17.886 2 0 Median 1.1845 1.1234 26.904 2 0 Median 1.4517 1.6519 NaN 1 0 Median 1.478 1.3647 NaN 1 0 Median 1.2877 1.4409 NaN 1 0 Median 1.0301 0.92982 NaN 1 0 Median 33842000 15877000 17965000 9095700 3872200 5223500 17538000 8929800 8608600 2264500 865550 1399000 834190 353600 480590 2098800 972250 1126600 2010600 883760 1126800 18291 1973 19064 95193;95194;95195;95196;95197;95198;95199;95200 96886;96887 96886 2 KSIDTGMGLER QYNREADGILKPLPKKSIDTGMGLERLVSV PLPKKSIDTGMGLERLVSVLQNKMSNYDTD K K S E R L 0 1 0 1 0 0 1 2 0 1 1 1 1 0 0 1 1 0 0 0 0 0 11 1 1205.6074 P49588 P49588 236 246 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2;3 0.023184 34.532 By MS/MS By MS/MS 2 1 1.1801 1.2277 15.014 3 Median 1.1003 1.143 10.11 2 0 Median 1.5175 1.4367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8439300 3883300 4556000 6167700 2930900 3236800 2271600 952440 1319200 0 0 0 0 0 0 0 0 0 0 0 0 18292 2385 19065 95201;95202;95203 96888;96889;96890 96889 3 KSIFVLPNDDLKK TALPSYRKFVTKSSKKSIFVLPNDDLKKLA SKKSIFVLPNDDLKKLARKGGIREVPYFNY K K S K K L 0 0 1 2 0 0 0 0 0 1 2 3 0 1 1 1 0 0 0 1 0 0 13 2 1515.8661 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1844 1856 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.00016482 71.933 By MS/MS 2 0.67812 0.81331 3.2446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67812 0.81331 3.2446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12869000 7271600 5597500 0 0 0 0 0 0 12869000 7271600 5597500 0 0 0 0 0 0 0 0 0 18293 2762 19066 95204;95205 96891;96892 96892 2 KSLDAPSWPGVYR QLSTNGTAQTPSASRKSLDAPSWPGVYRLS SRKSLDAPSWPGVYRLSMSLMEQLLKTLRY R K S Y R L 1 1 0 1 0 0 0 1 0 0 1 1 0 0 2 2 0 1 1 1 0 0 13 1 1474.7569 Q5SRE5 Q5SRE5 1386 1398 NUP188 Nucleoporin NUP188 homolog yes yes 3 0.070107 15.162 By MS/MS 1 0.79117 0.94207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79117 0.94207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2343900 1325000 1018900 0 0 0 0 0 0 2343900 1325000 1018900 0 0 0 0 0 0 0 0 0 18294 3074 19067 95206 96893 96893 0 KSLDFYTR DFLLQQTMLRVKDPKKSLDFYTRVLGMTLI LRVKDPKKSLDFYTRVLGMTLIQKCDFPIM K K S T R V 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 8 1 1028.5291 Q04760 Q04760 44 51 GLO1 Lactoylglutathione lyase yes yes 2 0.0032945 112.41 By MS/MS By MS/MS By matching 2 2 1 0.97748 0.95297 28.64 5 Median 0.91581 0.93019 5.9171 2 0 Median 1.0621 0.95758 0.68252 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48668 0.49959 NaN 1 0 Median NaN NaN NaN 0 0 Median 71484000 35621000 35862000 51622000 26953000 24669000 19028000 8216700 10811000 0 0 0 0 0 0 834500 451940 382570 0 0 0 18295 2712 19068 95207;95208;95209;95210;95211 96894;96895;96896;96897 96897 4 KSLEGDLEDLK LNSKDAALATALGDKKSLEGDLEDLKDQIA LGDKKSLEGDLEDLKDQIAQLEASLAAAKK K K S L K D 0 0 0 2 0 0 2 1 0 0 3 2 0 0 0 1 0 0 0 0 0 0 11 1 1245.6452 P20700;E9PBF6;A0A0D9SFE5 P20700 157 167 LMNB1 Lamin-B1 yes no 3 0.072419 8.3048 By MS/MS 1 1.0209 0.98009 NaN 1 Median 1.0209 0.98009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13923000 6520700 7401900 13923000 6520700 7401900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18296 2084 19069 95212 96898 96898 1 KSLHPIHQGITELSR RQSWRRASMKETNRRKSLHPIHQGITELSR KSLHPIHQGITELSRSISVDLAESKRLGCL R K S S R S 0 1 0 0 0 1 1 1 2 2 2 1 0 0 1 2 1 0 0 0 0 0 15 1 1714.9479 Q9H410;Q5JW53;Q5JW54;Q5JW57 Q9H410 108 122 DSN1 Kinetochore-associated protein DSN1 homolog yes no 4 0.004672 26.435 By MS/MS 1 0.78076 0.88699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78076 0.88699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1026800 482990 543840 0 0 0 0 0 0 1026800 482990 543840 0 0 0 0 0 0 0 0 0 18297 3960 19070 95213 96899 96899 1 KSLLVQTK KGCVVGTKKRVLTLRKSLLVQTKRRALEKI KRVLTLRKSLLVQTKRRALEKIDLKFIDTT R K S T K R 0 0 0 0 0 1 0 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 8 1 915.57532 P39023;G5E9G0 P39023 349 356 RPL3 60S ribosomal protein L3 yes no 2 0.033976 43.808 By matching By MS/MS By matching By matching By matching 1 2 2 3 1 1.1726 1.2162 16.642 9 Median 1.1225 1.0978 NaN 1 0 Median 1.2133 1.1217 11.437 2 0 Median 1.1462 1.2316 1.2398 2 0 Median NaN NaN NaN 0 0 Median 1.5935 1.4645 27.524 3 0 Plateau 1.4446 1.2875 NaN 1 0 Median 7231700 3263300 3968400 324390 131840 192550 2860500 1303600 1556900 1021500 438330 583160 0 0 0 2790400 1298800 1491600 234910 90697 144210 18298 2281 19071 95214;95215;95216;95217;95218;95219;95220;95221;95222 96900 96900 1 KSLNQSLAEWK ______________________________ KNEKKSLNQSLAEWKLFIYNPTTGEFLGRT K K S W K L 1 0 1 0 0 1 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 0 11 1 1302.6932 P54709;H7C547;F8WBY4 P54709 7 17 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2 0.00078495 82.417 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18299 2485 19072 95223 96901 96901 1 KSLPEEDVAEIQHAEEFLIKPESK EVIILPKKHKKKKERKSLPEEDVAEIQHAE EIQHAEEFLIKPESKVAKLDTSQWPLLLKN R K S S K V 2 0 0 1 0 1 6 0 1 2 2 3 0 1 2 2 0 0 0 1 0 0 24 2 2765.4123 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 20 43 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 4 0.0064578 25.604 By MS/MS By MS/MS 1 1 0.61706 0.70006 5.3309 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57054 0.67416 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.66736 0.72695 NaN 1 0 Median NaN NaN NaN 0 0 Median 46677000 24320000 22356000 0 0 0 0 0 0 39810000 20663000 19147000 0 0 0 6867200 3657600 3209600 0 0 0 18300 1634 19073 95224;95225 96902;96903 96902 2 KSLPVPGALEQVASR ______________________________ KSLPVPGALEQVASRLSSKVAAEVPHGSKQ K K S S R L 2 1 0 0 0 1 1 1 0 0 2 1 0 0 2 2 0 0 0 2 0 0 15 1 1550.878 B9EGQ5;M0QXA7 B9EGQ5 11 25 WIZ yes no 3 0.014419 29.733 By MS/MS 1 0.56283 0.63916 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56283 0.63916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3032400 1893600 1138900 0 0 0 0 0 0 3032400 1893600 1138900 0 0 0 0 0 0 0 0 0 18301 656 19074 95226 96904 96904 0 KSMYEEEINETR LENRCQSLTEDLEFRKSMYEEEINETRRKH EFRKSMYEEEINETRRKHETRLVEVDSGRQ R K S T R R 0 1 1 0 0 0 4 0 0 1 0 1 1 0 0 1 1 0 1 0 0 0 12 1 1527.6875 P20700;E9PBF6;A0A0D9SFE5 P20700 209 220 LMNB1 Lamin-B1 yes no 2;3 1.3867E-06 122.42 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 9 9 0.94993 0.94409 25.741 25 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72656 0.77151 5.5624 3 0 Median 1.5251 1.3983 7.7592 4 0 Median 0.83256 0.87181 8.8161 9 0 Median 1.4867 1.3044 16.952 9 2 Median 143550000 72575000 70980000 0 0 0 0 0 0 16080000 8700700 7379700 11262000 4489600 6771900 99393000 52735000 46658000 16820000 6649200 10170000 18302 2084 19075;19076 95227;95228;95229;95230;95231;95232;95233;95234;95235;95236;95237;95238;95239;95240;95241;95242;95243;95244;95245;95246;95247;95248;95249;95250;95251 96905;96906;96907;96908;96909;96910;96911;96912;96913;96914;96915;96916;96917;96918;96919;96920;96921;96922;96923;96924;96925;96926;96927;96928;96929;96930;96931;96932;96933;96934 96912 843 29 KSMYEEEINETRR LENRCQSLTEDLEFRKSMYEEEINETRRKH FRKSMYEEEINETRRKHETRLVEVDSGRQI R K S R R K 0 2 1 0 0 0 4 0 0 1 0 1 1 0 0 1 1 0 1 0 0 0 13 2 1683.7886 P20700;E9PBF6;A0A0D9SFE5 P20700 209 221 LMNB1 Lamin-B1 yes no 3;4 0.0013845 41.401 By MS/MS By MS/MS By MS/MS 1 2 1 1.1398 1.1773 22.946 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3954 1.2727 NaN 1 0 Median 0.80925 0.93626 21.382 2 0 Median 1.5465 1.3406 NaN 1 0 Median 16906000 8479400 8426400 0 0 0 0 0 0 0 0 0 1617300 619280 998010 13701000 7174300 6526400 1587800 685810 901980 18303 2084 19077 95252;95253;95254;95255 96935;96936;96937;96938 96938 4 KSNFAEALAAHK RADAPEEEDHVLVLRKSNFAEALAAHKYLL VLRKSNFAEALAAHKYLLVEFYAPWCGHCK R K S H K Y 4 0 1 0 0 0 1 0 1 0 1 2 0 1 0 1 0 0 0 0 0 0 12 1 1285.6779 P07237;H7BZ94;I3L312;I3L0S0;I3NI03;I3L3U6;I3L514;I3L3P5;I3L1Y5 P07237 31 42 P4HB Protein disulfide-isomerase yes no 3 1.5152E-09 110.98 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.3372 1.2457 15.525 7 Median 1.2937 1.2204 2.8976 2 0 Median 1.528 1.4289 18.564 3 0 Median 1.1003 1.1531 NaN 1 0 Median 1.6355 1.6348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79571000 27865000 51706000 42731000 13736000 28996000 30913000 11741000 19172000 3960900 1664400 2296500 1965600 723790 1241800 0 0 0 0 0 0 18304 1883 19078 95256;95257;95258;95259;95260;95261;95262;95263 96939;96940;96941;96942;96943;96944;96945;96946;96947;96948;96949;96950 96941 12 KSNFSNSADDIK GENNKPREKSESNKRKSNFSNSADDIKSKK NKRKSNFSNSADDIKSKKKREQSNDIARGF R K S I K S 1 0 2 2 0 0 0 0 0 1 0 2 0 1 0 3 0 0 0 0 0 0 12 1 1324.6259 P45973 P45973 91 102 CBX5 Chromobox protein homolog 5 yes yes 2;3 0.00196 53.683 By matching By matching By MS/MS By matching 1 1 2 2 0.8342 0.81582 31.308 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48495 0.49468 NaN 1 0 Median 0.92416 0.82993 NaN 1 0 Median 0.70405 0.74894 9.6712 2 0 Median 1.2972 1.1258 8.9709 2 0 Median 9863800 5537500 4326200 0 0 0 0 0 0 819240 466280 352960 187950 82938 105020 8134600 4702500 3432100 721970 285790 436170 18305 2331 19079 95264;95265;95266;95267;95268;95269 96951;96952 96951 2 KSNVKPNSGELDPLYVVEVLLR EGDDFGWGVVVNFSKKSNVKPNSGELDPLY SGELDPLYVVEVLLRCSKESLKNSATEAAK K K S L R C 0 1 2 1 0 0 2 1 0 0 4 2 0 0 2 2 0 0 1 4 0 0 22 2 2468.3639 P42285 P42285 680 701 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.01913 15.506 By MS/MS By matching 1 1 0.60983 0.70666 27.69 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75429 0.8595 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49303 0.581 NaN 1 0 Median NaN NaN NaN 0 0 Median 1744000 937050 806960 0 0 0 0 0 0 1487900 790380 697530 0 0 0 256100 146670 109430 0 0 0 18306 2309 19080 95270;95271 96953 96953 1 KSPDSDVAATLKK FIVALNKIDRLYDWKKSPDSDVAATLKKQK WKKSPDSDVAATLKKQKKNTKDEFEERAKA K K S K K Q 2 0 0 2 0 0 0 0 0 0 1 3 0 0 1 2 1 0 0 1 0 0 13 2 1358.7405 A0A087WUT6;O60841 A0A087WUT6 766 778 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.0051463 33.204 By matching By matching By MS/MS By MS/MS By matching 2 1 1 1 2 0.95234 0.99664 13.389 7 Median 0.91433 1.0041 5.3385 2 0 Median 0.9136 0.86768 NaN 1 0 Median 1.0759 1.2928 NaN 1 0 Median 0.98335 0.99664 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91321 0.96668 12.91 2 0 Median 7069400 3468300 3601200 2004600 1020500 984120 1798000 909410 888560 957570 403720 553850 1312000 603580 708450 0 0 0 997240 531060 466190 18307 35 19081 95272;95273;95274;95275;95276;95277;95278 96954;96955;96956 96956 3 KSPGVAAAVAEDGGLKK ______________________________ PGVAAAVAEDGGLKKCKISSYCRSQPPARL R K S K K C 4 0 0 1 0 0 1 3 0 0 1 3 0 0 1 1 0 0 0 2 0 0 17 2 1596.8835 Q9BTE7;E9PM04;E9PQV9;E9PLH8;E9PM78;H0YD80;E9PLS2 Q9BTE7 8 24 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 3 7.8719E-08 93.768 By MS/MS By MS/MS 1 1 1.1459 1.1672 21.164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2014 1.3556 NaN 1 0 Median 1.0929 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13202000 5700400 7501400 0 0 0 0 0 0 7263700 2790200 4473500 5938100 2910200 3027900 0 0 0 0 0 0 18308 3826 19082 95279;95280 96957;96958;96959 96959 3 KSQGPLEVAEAAVSQSSGLAAK KAGGKEFLETVKELRKSQGPLEVAEAAVSQ VAEAAVSQSSGLAAKFVIHCHIPQWGSDKC R K S A K F 5 0 0 0 0 2 2 2 0 0 2 2 0 0 1 4 0 0 0 2 0 0 22 1 2127.1172 Q9P0M6;Q5SQT3 Q9P0M6 250 271 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 3 2.0545E-12 68.369 By MS/MS By matching 2 1 0.56922 0.60707 28.19 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56831 0.60412 0.68811 2 0 Median 1.152 0.98434 NaN 1 0 Median 20009000 12241000 7767900 0 0 0 0 0 0 0 0 0 0 0 0 19519000 12046000 7473600 489320 195090 294230 18309 4206 19083 95281;95282;95283 96960;96961;96962;96963 96962 4 KSQIFSTASDNQPTVTIK VMTKLIPRNTVVPTKKSQIFSTASDNQPTV IFSTASDNQPTVTIKVYEGERPLTKDNHLL K K S I K V 1 0 1 1 0 2 0 0 0 2 0 2 0 1 1 3 3 0 0 1 0 0 18 1 1964.0215 P11021 P11021 447 464 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 1.2912E-06 70.216 By MS/MS By matching 3 2 0.9294 0.92193 11.507 5 Median 0.9294 0.95261 14.444 3 0 Plateau 0.99642 0.933 6.211 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47742000 26286000 21456000 38392000 20522000 17871000 9349300 5764000 3585200 0 0 0 0 0 0 0 0 0 0 0 0 18310 1948 19084 95284;95285;95286;95287;95288 96964;96965;96966;96967 96965 4 KSQLPAEGDAGAEWAAAVLK EEGTSLTASVVADVRKSQLPAEGDAGAEWA AEGDAGAEWAAAVLKQERAHEVGAQGGPPV R K S L K Q 6 0 0 1 0 1 2 2 0 0 2 2 0 0 1 1 0 1 0 1 0 0 20 1 2011.0375 Q14676 Q14676 597 616 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.00010625 38.799 By MS/MS 1 0.90661 1.0485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90661 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8820100 4578200 4241900 0 0 0 0 0 0 8820100 4578200 4241900 0 0 0 0 0 0 0 0 0 18311 2887 19085 95289 96968 96968 1 KSQVFSTAADGQTQVEIK VFTKLINRNTTIPTKKSQVFSTAADGQTQV VFSTAADGQTQVEIKVCQGEREMAGDNKLL K K S I K V 2 0 0 1 0 3 1 1 0 1 0 2 0 1 0 2 2 0 0 2 0 0 18 1 1935.9902 P38646 P38646 468 485 HSPA9 Stress-70 protein, mitochondrial yes yes 3 1.5387E-08 93.152 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1848 1.1202 13.203 4 Median 1.0694 0.99839 NaN 1 0 Median 1.4144 1.3213 NaN 1 0 Median 0.92301 1.0354 NaN 1 0 Median 1.3126 1.212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40435000 18599000 21836000 23444000 10613000 12830000 8541600 3922200 4619400 6663200 3262500 3400700 1786400 800910 985470 0 0 0 0 0 0 18312 2277 19086 95290;95291;95292;95293 96969;96970;96971;96972;96973;96974 96970 6 KSSFANVAAATPAIK SAVGKQPAPRNLVPKKSSFANVAAATPAIK KSSFANVAAATPAIKKPPSGFKGTIPKRPW K K S I K K 5 0 1 0 0 0 0 0 0 1 0 2 0 1 1 2 1 0 0 1 0 0 15 1 1474.8144 Q9BTC0 Q9BTC0 570 584 DIDO1 Death-inducer obliterator 1 yes yes 2;3 7.9955E-05 53.828 By MS/MS By matching By matching 5 2 1 0.75736 0.84973 16.754 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73931 0.79247 19.821 5 1 Median 0.94102 0.89394 7.1724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41877000 22912000 18965000 0 0 0 0 0 0 38414000 21163000 17251000 3126200 1546700 1579500 0 0 0 336390 202450 133940 18313 3824 19087 95294;95295;95296;95297;95298;95299;95300;95301 96975;96976;96977 96975 3 KSTVLQQQYNR GDEESTMLEDSVSPKKSTVLQQQYNRVGKV VSPKKSTVLQQQYNRVGKVEHGSVALPAIM K K S N R V 0 1 1 0 0 3 0 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 1 1363.7208 Q9Y490 Q9Y490 428 438 TLN1 Talin-1 yes yes 3 0.0010685 47.894 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1.2262 1.1256 10.249 6 Median 0.90344 0.92466 NaN 1 0 Median 1.2417 1.1847 2.3252 2 0 Median NaN NaN NaN 0 0 Median 1.0985 1.0308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2865 1.1388 6.5501 2 0 Median 7543200 3476100 4067200 1477400 798240 679160 3863000 1633800 2229200 0 0 0 170300 74644 95651 0 0 0 2032600 969380 1063200 18314 4441 19088 95302;95303;95304;95305;95306;95307 96978;96979;96980;96981;96982;96983 96980 6 KSVAEGLSGSLVQEPFQLATEK NTVISQEPFVPKKEKKSVAEGLSGSLVQEP SGSLVQEPFQLATEKRAKERQELEKRMAEV K K S E K R 2 0 0 0 0 2 3 2 0 0 3 2 0 1 1 3 1 0 0 2 0 0 22 1 2317.2165 Q9ULW0 Q9ULW0 645 666 TPX2 Targeting protein for Xklp2 yes yes 3 0.014158 15.316 By MS/MS 1 0.82671 0.9458 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82671 0.9458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3004000 1514600 1489400 0 0 0 0 0 0 3004000 1514600 1489400 0 0 0 0 0 0 0 0 0 18315 4330 19089 95308 96984 96984 1 KSYMIPENEFHHKDPPPR LYALAMGYSGQLKSRKSYMIPENEFHHKDP MIPENEFHHKDPPPRNAVASVQNGPGGGPS R K S P R N 0 1 1 1 0 0 2 0 2 1 0 2 1 1 4 1 0 0 1 0 0 0 18 2 2221.0739 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1177 1194 THOC2 THO complex subunit 2 yes no 5 0.023749 17 By MS/MS 1 0.33109 0.43743 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33109 0.43743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3695200 2520100 1175100 0 0 0 0 0 0 3695200 2520100 1175100 0 0 0 0 0 0 0 0 0 18316 3448 19090 95309 96985 96985 1 KTAAELLQSQGSQAGGSQTLK KKKSLDDEVNAFKQRKTAAELLQSQGSQAG LQSQGSQAGGSQTLKRDKEKKNLGFL____ R K T L K R 3 0 0 0 0 4 1 3 0 0 3 2 0 0 0 3 2 0 0 0 0 0 21 1 2102.0968 B1AMS2;Q14141 B1AMS2 400 420 SEPT6 Septin-6 yes no 3 1.7642E-12 79.143 By MS/MS By MS/MS 2 2 1.192 1.1891 26.231 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90704 0.94695 9.9568 2 0 Median 1.5046 1.4661 7.3682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48038000 22645000 25393000 0 0 0 0 0 0 29276000 15105000 14171000 18762000 7540600 11222000 0 0 0 0 0 0 18317 573 19091 95310;95311;95312;95313 96986;96987;96988;96989;96990 96988 5 KTAAELLQSQGSQAGGSQTLKR KKKSLDDEVNAFKQRKTAAELLQSQGSQAG QSQGSQAGGSQTLKRDKEKKNLGFL_____ R K T K R D 3 1 0 0 0 4 1 3 0 0 3 2 0 0 0 3 2 0 0 0 0 0 22 2 2258.1979 B1AMS2;Q14141 B1AMS2 400 421 SEPT6 Septin-6 yes no 4 6.2154E-13 78.975 By MS/MS By MS/MS 2 2 1.1331 1.2591 63.343 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55065 0.65772 75.733 2 1 Median 1.3481 1.4532 4.1699 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28586000 13702000 14885000 0 0 0 0 0 0 12950000 7229800 5720100 15637000 6472100 9164400 0 0 0 0 0 0 18318 573 19092 95314;95315;95316;95317 96991;96992;96993 96992 3 KTAAPVNALVSHLLVVEPEK GPFPAGPLAVAGGPRKTAAPVNALVSHLLV VNALVSHLLVVEPEKLYAMPDPAGPDGHLP R K T E K L 3 0 1 0 0 0 2 0 1 0 3 2 0 0 2 1 1 0 0 4 0 0 20 1 2114.2099 P11474;F5H0E9 P11474 189 208 ESRRA Steroid hormone receptor ERR1 yes no 3 3.9773E-05 38.271 By matching By MS/MS By matching 1 1 1 0.8032 0.69709 36.976 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.149 1.192 NaN 1 0 Median 0.61758 0.58659 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8032 0.69709 NaN 1 0 Median 47548000 23241000 24308000 0 0 0 0 0 0 40989000 19628000 21361000 6330500 3492900 2837600 0 0 0 228950 120160 108790 18319 1966 19093 95318;95319;95320 96994 96994 1 KTAFGIISTVK VSTNCRAALLHGETRKTAFGIISTVKKPRP GETRKTAFGIISTVKKPRPSEGDEDCLPAS R K T V K K 1 0 0 0 0 0 0 1 0 2 0 2 0 1 0 1 2 0 0 1 0 0 11 1 1163.6914 P78346;Q5VU10 P78346 236 246 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.0078758 45.908 By MS/MS By matching 1 1 0.88835 0.84137 30.412 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0473 1.0432 NaN 1 0 Median 0.75349 0.67857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14990000 7487700 7502400 0 0 0 0 0 0 10905000 5075200 5830100 4084800 2412500 1672300 0 0 0 0 0 0 18320 2641 19094 95321;95322 96995 96995 1 KTAGLVMTHLILK PHLYARLRDPAQQVRKTAGLVMTHLILKDM VRKTAGLVMTHLILKDMVKVKGQVSEMAVL R K T L K D 1 0 0 0 0 0 0 1 1 1 3 2 1 0 0 0 2 0 0 1 0 0 13 1 1423.8585 Q15021 Q15021 1110 1122 NCAPD2 Condensin complex subunit 1 yes yes 3 0.00047385 49.482 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.94727 0.94009 27.766 5 Median 0.94727 0.92634 NaN 1 0 Median 0.7127 0.66975 NaN 1 0 Median 0.82158 0.94009 NaN 1 0 Median 1.2981 1.2084 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5048 1.3771 NaN 1 0 Median 10672000 5322400 5349300 6694700 3277700 3417000 1039800 619300 420520 2351500 1195900 1155600 464120 172210 291910 0 0 0 121580 57317 64263 18321 2915 19095 95323;95324;95325;95326;95327 96996 96996 1 KTALEMVQAAGTDR RKISGLKTSMAEGERKTALEMVQAAGTDRH RKTALEMVQAAGTDRHCVTFVLHEEDHTLG R K T D R H 3 1 0 1 0 1 1 1 0 0 1 1 1 0 0 0 2 0 0 1 0 0 14 1 1489.7559 P0DPB6;A0A0R4J2F3 P0DPB6 24 37 yes no 3 0.00027751 50.155 By MS/MS By matching By matching 1 1 1 0.88309 0.9179 46.401 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88309 0.9179 NaN 1 0 Median 1.0248 0.84538 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47443 0.39561 NaN 1 0 Median 7954400 3812800 4141500 0 0 0 0 0 0 6733600 3217700 3515900 704020 331160 372860 0 0 0 516770 263990 252780 18322 1932 19096 95328;95329;95330 96997;96998 96998 2 KTANDMIHAENMR KALTSELANARDESKKTANDMIHAENMRLG SKKTANDMIHAENMRLGRDKYKTLRQIRQG K K T M R L 2 1 2 1 0 0 1 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 13 1 1529.7079 P26038 P26038 538 550 MSN Moesin yes yes 2;3 5.8978E-07 120.53 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 1.1606 1.1324 19.994 9 Median 1.1549 1.1789 18.097 3 0 Plateau 1.1903 1.0828 31.833 3 0 Median 1.1073 1.1771 NaN 1 0 Median 1.2332 1.1532 2.5716 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54746000 24608000 30138000 14145000 6602100 7542900 21956000 10062000 11894000 15408000 6727500 8680800 3236300 1216000 2020400 0 0 0 0 0 0 18323 2139 19097 95331;95332;95333;95334;95335;95336;95337;95338;95339 96999;97000;97001;97002;97003;97004;97005;97006;97007;97008;97009;97010;97011 97008 13 KTASVLSKDDVAPESGDTTVK FEKQKERKKKRQQARKTASVLSKDDVAPES SKDDVAPESGDTTVKKPESKKEQTPEHGKK R K T V K K 2 0 0 3 0 0 1 1 0 0 1 3 0 0 1 3 3 0 0 3 0 0 21 2 2147.0958 O76021;J3QSV6 O76021 311 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3;4 1.6661E-09 60.761 By matching By matching By MS/MS By MS/MS 1 1 7 4 0.86844 0.87807 15.135 13 Median NaN NaN NaN 0 0 Median 1.1737 1.1269 NaN 1 0 Median 0.96642 1.1419 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85024 0.94789 13.723 7 0 Median 0.83668 0.81036 6.858 4 0 Median 90658000 45377000 45282000 0 0 0 4164500 1777700 2386800 751150 441560 309580 0 0 0 66291000 33203000 33088000 19452000 9954600 9497400 18324 1716 19098 95340;95341;95342;95343;95344;95345;95346;95347;95348;95349;95350;95351;95352 97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022 97016 11 KTCTTVAFTQVNSEDK CIIKGKARLGRLVHRKTCTTVAFTQVNSED TCTTVAFTQVNSEDKGALAKLVEAIRTNYN R K T D K G 1 0 1 1 1 1 1 0 0 0 0 2 0 1 0 1 4 0 0 2 0 0 16 1 1827.8673 P62424;Q5T8U2 P62424 197 212 RPL7A 60S ribosomal protein L7a yes no 3 2.4317E-10 116.86 By MS/MS 1 1.0948 0.98601 NaN 1 Median NaN NaN NaN 0 0 Median 1.0948 0.98601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7243300 2709200 4534100 0 0 0 7243300 2709200 4534100 0 0 0 0 0 0 0 0 0 0 0 0 18325 2589 19099 95353 97023 97023 1 KTCTTVAFTQVNSEDKGALAK CIIKGKARLGRLVHRKTCTTVAFTQVNSED AFTQVNSEDKGALAKLVEAIRTNYNDRYDE R K T A K L 3 0 1 1 1 1 1 1 0 0 1 3 0 1 0 1 4 0 0 2 0 0 21 2 2268.142 P62424;Q5T8U2 P62424 197 217 RPL7A 60S ribosomal protein L7a yes no 3;4 1.1727E-06 44.788 By MS/MS 2 1.0317 1.0247 10.391 2 Median NaN NaN NaN 0 0 Median 1.0317 1.0247 10.391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19566000 8762500 10803000 0 0 0 19566000 8762500 10803000 0 0 0 0 0 0 0 0 0 0 0 0 18326 2589 19100 95354;95355 97024;97025;97026;97027 97026 4 KTDDVEAMSSQPALALDER STDFAPIKEDFGQEKKTDDVEAMSSQPALA VEAMSSQPALALDERKLGDVSPTQIDVSQF K K T E R K 3 1 0 3 0 1 2 0 0 0 2 1 1 0 1 2 1 0 0 1 0 0 19 1 2074.9841 P46821 P46821 1477 1495 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 1.305E-18 110.56 By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 1.0078 1.0263 14.17 6 Median 0.98679 1.0277 NaN 1 0 Median 0.84402 0.79588 NaN 1 0 Median 0.88409 1.0264 NaN 1 0 Median 1.1017 1.0262 13.09 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47674000 21102000 26572000 14400000 6601600 7798800 3321500 1604700 1716800 21527000 9160500 12366000 8425300 3735200 4690100 0 0 0 0 0 0 18327 2347 19101;19102 95356;95357;95358;95359;95360;95361 97028;97029;97030;97031;97032;97033;97034;97035;97036 97029 1072 9 KTDFFIGGEEGMAEK GVQELVNTFFSFLRRKTDFFIGGEEGMAEK KTDFFIGGEEGMAEKLITQTFSHHNQLAQK R K T E K L 1 0 0 1 0 0 3 3 0 1 0 2 1 2 0 0 1 0 0 0 0 0 15 1 1657.7658 Q9Y266;A0A0A0MSU9 Q9Y266 39 53 NUDC Nuclear migration protein nudC yes no 3 0.0003004 41.386 By MS/MS By matching 1 1 1.2455 1.2548 36.276 2 Median 1.0423 0.97091 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4882 1.6218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12842000 5581300 7260400 7294500 3234200 4060400 0 0 0 5547100 2347100 3200000 0 0 0 0 0 0 0 0 0 18328 4376 19103 95362;95363 97037;97038 97038 2 KTDPSSLGATSASFNFGK TEDTPDKKMEVASEKKTDPSSLGATSASFN PSSLGATSASFNFGKKVDSSVLGSLSSVPL K K T G K K 2 0 1 1 0 0 0 2 0 0 1 2 0 2 1 4 2 0 0 0 0 0 18 1 1813.8846 Q9UKX7 Q9UKX7 258 275 NUP50 Nuclear pore complex protein Nup50 yes yes 2;3 4.1114E-06 80.522 By MS/MS By MS/MS 2 1 0.83903 0.87373 33.516 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66112 0.69038 33.309 2 0 Median 1.0439 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31833000 16935000 14898000 0 0 0 0 0 0 28823000 15451000 13372000 3009800 1483500 1526300 0 0 0 0 0 0 18329 4317 19104 95364;95365;95366 97039;97040;97041;97042 97040 4 KTDPWSLLAVLGAPVPSDLQAQR LPLHGVEHSARKWQRKTDPWSLLAVLGAPV AVLGAPVPSDLQAQRHPTTGQILGYKEVLL R K T Q R H 3 1 0 2 0 2 0 1 0 0 4 1 0 0 3 2 1 1 0 2 0 0 23 1 2461.3329 Q15477;B4E0B4 Q15477 84 106 SKIV2L Helicase SKI2W yes no 3 0.024309 12.929 By matching By MS/MS 1 1 0.60118 0.63162 22.131 2 Median NaN NaN NaN 0 0 Median 0.76484 0.73861 NaN 1 0 Median 0.47254 0.54012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1457600 917390 540170 0 0 0 370300 194590 175710 1087300 722800 364460 0 0 0 0 0 0 0 0 0 18330 2955 19105 95367;95368 97043;97044 97044 2 KTDRPALHLR ESQINKQTKVGDIARKTDRPALHLRIPPQP GDIARKTDRPALHLRIPPQPGALGSPPPAA R K T L R I 1 2 0 1 0 0 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 10 2 1205.6993 O14686 O14686 2096 2105 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.021876 25.938 By MS/MS 1 0.77104 0.87718 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77104 0.87718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1040400 560440 479960 0 0 0 0 0 0 1040400 560440 479960 0 0 0 0 0 0 0 0 0 18331 1490 19106 95369 97045 97045 1 KTEELEEESFPER WEGLVYAPPGKEKQRKTEELEEESFPERSK QRKTEELEEESFPERSKKEDRGKRSEGGHR R K T E R S 0 1 0 0 0 0 6 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 13 1 1621.7471 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 486 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2;3 6.402E-05 125.74 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1 2 1.0815 1.0179 61.561 10 Median 1.1394 1.106 121.01 3 0 Median 1.1049 1.0404 NaN 1 0 Median 0.72579 0.82229 20.384 2 1 Median 1.0213 0.98152 NaN 1 0 Median 1.0587 1.1644 NaN 1 0 Median 1.2151 1.0559 8.2781 2 0 Median 47865000 24710000 23155000 11248000 6049300 5198300 3520800 2035200 1485600 14747000 8254400 6492300 3986200 1861900 2124300 9509000 4290800 5218200 4854600 2218400 2636200 18332 439 19107 95370;95371;95372;95373;95374;95375;95376;95377;95378;95379 97046;97047;97048;97049;97050;97051;97052;97053;97054;97055 97050 10 KTEKEESTEVLK LSSDFTCGSPTAAGKKTEKEESTEVLKAQS AGKKTEKEESTEVLKAQSAGTVRSAAPPQE K K T L K A 0 0 0 0 0 0 4 0 0 0 1 3 0 0 0 1 2 0 0 1 0 0 12 2 1419.7457 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;F8W7E0;H0YA91 P20810 250 261 CAST Calpastatin yes no 3 0.011112 65.563 By MS/MS 1 1.0169 0.96579 NaN 1 Median NaN NaN NaN 0 0 Median 1.0169 0.96579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1868200 933140 935050 0 0 0 1868200 933140 935050 0 0 0 0 0 0 0 0 0 0 0 0 18333 239 19108 95380 97056 97056 1 KTEPATGFIDGDLIESFLDISRPK GKIEHSFWRSFHTERKTEPATGFIDGDLIE DGDLIESFLDISRPKMQEVVANLQYDDGSG R K T P K M 1 1 0 3 0 0 2 2 0 3 2 2 0 2 2 2 2 0 0 0 0 0 24 2 2648.3697 Q16531 Q16531 1081 1104 DDB1 DNA damage-binding protein 1 yes yes 3;4 0.025696 13.896 By MS/MS By matching By MS/MS 4 1 3 0.63189 0.68814 19.95 8 Median 0.7218 0.763 28.086 4 0 Median 0.70836 0.70178 NaN 1 0 Median 0.56827 0.67326 2.3173 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9531400 5701000 3830400 3026300 1774000 1252300 161590 88257 73337 6343600 3838700 2504800 0 0 0 0 0 0 0 0 0 18334 2985 19109 95381;95382;95383;95384;95385;95386;95387;95388 97057;97058;97059;97060 97057 4 KTESAVSQMQSVIELGR HYLMLPRVREELIDKKTESAVSQMQSVIEL ESAVSQMQSVIELGRVIRDRKTIPIKYPLK K K T G R V 1 1 0 0 0 2 2 1 0 1 1 1 1 0 0 3 1 0 0 2 0 0 17 1 1861.9568 P41252;A0A0A0MSX9;J3KR24 P41252 817 833 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 2.3693E-05 49.559 By MS/MS By matching By matching 1 1 1 1.3803 1.3265 18.574 3 Median 1.5216 1.5831 NaN 1 0 Median 1.153 1.092 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3803 1.3265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6665900 2721800 3944100 4337700 1705800 2632000 2185200 953820 1231400 0 0 0 143000 62209 80796 0 0 0 0 0 0 18335 2302 19110 95389;95390;95391 97061;97062 97061 2 KTETMNVVMETNK QVTAKTMAQHEELMKKTETMNVVMETNKML MKKTETMNVVMETNKMLREEKERLEQDLQQ K K T N K M 0 0 2 0 0 0 2 0 0 0 0 2 2 0 0 0 3 0 0 2 0 0 13 1 1523.7324 P12270 P12270 1265 1277 TPR Nucleoprotein TPR yes yes 3 1.4692E-06 97.276 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1.0138 1.1336 22.197 8 Median 1.1459 1.1927 12.913 2 0 Median 1.0988 1.0534 24.264 2 0 Median 1.0212 1.1804 NaN 1 0 Median 1.2623 1.2319 27.298 2 0 Median 0.71684 0.7493 NaN 1 0 Median NaN NaN NaN 0 0 Median 30316000 14350000 15966000 5177400 2472800 2704600 12839000 6043500 6795700 7569800 3659300 3910500 3453300 1415400 2037900 1276200 759070 517130 0 0 0 18336 1978 19111 95392;95393;95394;95395;95396;95397;95398;95399 97063;97064;97065;97066;97067;97068;97069;97070 97069 8 KTEVLMENFR FCPMVGSEVYSTEIKKTEVLMENFRRAIGL STEIKKTEVLMENFRRAIGLRIKETKEVYE K K T F R R 0 1 1 0 0 0 2 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 10 1 1265.6438 Q9Y265;E7ETR0 Q9Y265 108 117 RUVBL1 RuvB-like 1 yes no 2;3 0.00012039 101.11 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 4 1.192 1.1186 13.702 12 Median 1.1737 1.1719 18.292 2 1 Median 1.2684 1.159 18.699 2 0 Median 0.94125 0.98058 18.295 4 0 Median 1.2535 1.1763 5.8479 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62446000 30878000 31568000 10509000 5302100 5207100 4591900 2065200 2526700 36276000 18524000 17752000 11069000 4986600 6082300 0 0 0 0 0 0 18337 4375 19112;19113 95400;95401;95402;95403;95404;95405;95406;95407;95408;95409;95410;95411 97071;97072;97073;97074;97075;97076;97077;97078;97079;97080;97081;97082;97083;97084;97085;97086 97076 1953 16 KTEVLMENFRR FCPMVGSEVYSTEIKKTEVLMENFRRAIGL TEIKKTEVLMENFRRAIGLRIKETKEVYEG K K T R R A 0 2 1 0 0 0 2 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 11 2 1421.7449 Q9Y265;E7ETR0 Q9Y265 108 118 RUVBL1 RuvB-like 1 yes no 3 0.00021076 65.5 By MS/MS By matching By matching By matching 1 1 1 1 1.282 1.3352 19.887 4 Linear 1.2635 1.4062 NaN 1 0 Median 1.057 1.2678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3027 1.4906 NaN 1 0 Median 1.0978 0.95244 NaN 1 0 Median 24144000 9908200 14236000 9140300 4175100 4965300 825340 373590 451740 0 0 0 0 0 0 10967000 4309200 6657400 3211900 1050300 2161600 18338 4375 19114 95412;95413;95414;95415 97087 97087 1 KTEVVIYHGMSALQK LLRRVKAEVATELPKKTEVVIYHGMSALQK KTEVVIYHGMSALQKKYYKAILMKDLDAFE K K T Q K K 1 0 0 0 0 1 1 1 1 1 1 2 1 0 0 1 1 0 1 2 0 0 15 1 1702.9076 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C0F0 Q86WJ1 273 287 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 3 0.00023212 44.252 By MS/MS 1 1.0357 1.1807 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0357 1.1807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25702000 12430000 13272000 0 0 0 0 0 0 25702000 12430000 13272000 0 0 0 0 0 0 0 0 0 18339 3293 19115 95416 97088;97089 97089 2 KTEYISTEFNR SKRSQQHAKVVPWMRKTEYISTEFNRYGIS PWMRKTEYISTEFNRYGISNEKPEVKIGVS R K T N R Y 0 1 1 0 0 0 2 0 0 1 0 1 0 1 0 1 2 0 1 0 0 0 11 1 1386.6779 Q8N7H5;B4DGJ5 Q8N7H5 133 143 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2;3 0.00027847 75.294 By MS/MS By MS/MS 2 1 0.86623 0.9199 10.895 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81794 0.86897 8.0552 2 0 Median 1.1131 1.0206 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24382000 12655000 11727000 0 0 0 0 0 0 22408000 11783000 10625000 1973500 871640 1101800 0 0 0 0 0 0 18340 3393 19116 95417;95418;95419 97090;97091;97092;97093 97092 4 KTFEINPR QTGKDISTNYYASQKKTFEINPRHPLIRDM NYYASQKKTFEINPRHPLIRDMLRRIKEDE K K T P R H 0 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 1 1003.5451 P14625;Q58FF3;H0YIV0 P14625 683 690 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.010906 66.073 By MS/MS By MS/MS By matching 1 1 1 1.1912 1.1793 68.362 3 Median 1.8269 1.8617 NaN 1 1 Median 1.1912 1.1793 NaN 1 0 Median 0.42453 0.48535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18514000 8521200 9992900 1475600 467400 1008200 16384000 7684500 8699300 654670 369280 285390 0 0 0 0 0 0 0 0 0 18341 2006 19117 95420;95421;95422 97094;97095;97096 97095 3 KTFSHELSDFGLESTAGEIPVVAIR FLDAGHKLNFAVASRKTFSHELSDFGLEST GLESTAGEIPVVAIRTAKGEKFVMQEEFSR R K T I R T 2 1 0 1 0 0 3 2 1 2 2 1 0 2 1 3 2 0 0 2 0 0 25 1 2702.3915 P30101 P30101 305 329 PDIA3 Protein disulfide-isomerase A3 yes yes 3;4 9.6606E-09 47.281 By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 0.91199 0.87657 72.736 10 Median 0.90636 0.90017 8.7941 3 0 Plateau 1.0323 0.94784 15.193 4 0 Median 2.5744 2.887 146.09 2 1 Median 0.63647 0.63619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131220000 62142000 69075000 63705000 33134000 30571000 43474000 20829000 22645000 21833000 6501900 15331000 2204700 1676800 527880 0 0 0 0 0 0 18342 2189 19118 95423;95424;95425;95426;95427;95428;95429;95430;95431;95432 97097;97098;97099;97100;97101;97102;97103;97104;97105;97106 97102 9 KTFSYAGFEMQPK GALEDSQLVAGVAFKKTFSYAGFEMQPKKY FKKTFSYAGFEMQPKKYHNPKIALLNVELE K K T P K K 1 0 0 0 0 1 1 1 0 0 0 2 1 2 1 1 1 0 1 0 0 0 13 1 1532.7334 Q99832 Q99832 218 230 CCT7 T-complex protein 1 subunit eta yes yes 3 0.00035471 53.001 By MS/MS By matching By matching 1 2 1 1.0479 0.9822 56.287 4 Median 1.0933 1.0242 NaN 1 0 Median 0.7218 0.6789 46.315 2 0 Median 1.8444 1.9374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19760000 9166200 10593000 14811000 6748700 8062200 2838600 1472000 1366600 2110100 945500 1164600 0 0 0 0 0 0 0 0 0 18343 3771 19119 95433;95434;95435;95436 97107;97108 97108 2 KTFTAWCNSHLR DRDLLLDPAWEKQQRKTFTAWCNSHLRKAG QQRKTFTAWCNSHLRKAGTQIENIDEDFRD R K T L R K 1 1 1 0 1 0 0 0 1 0 1 1 0 1 0 1 2 1 0 0 0 0 12 1 1519.7354 O43707;F5GXS2;K7EP19;P12814;P35609;A0A494C1A0;Q08043;A0A494C033;A0A494C166;A0A494C0Q3 O43707 54 65 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 3 0.0001474 67.252 By MS/MS 2 0.91322 0.88431 14.284 2 Median NaN NaN NaN 0 0 Median 0.91322 0.88431 14.284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7177400 3701600 3475800 0 0 0 7177400 3701600 3475800 0 0 0 0 0 0 0 0 0 0 0 0 18344 1585;1983 19120 95437;95438 97109;97110;97111 97109 3 KTGEAYVQFEEPEMANQALLK NIVDITFVMDYRGRRKTGEAYVQFEEPEMA VQFEEPEMANQALLKHREEIGNRYIEIFPS R K T L K H 3 0 1 0 0 2 4 1 0 0 2 2 1 1 1 0 1 0 1 1 0 0 21 1 2395.173 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 226 246 GRSF1 G-rich sequence factor 1 yes no 3 9.0186E-05 35.748 By matching By MS/MS By matching 1 1 1 0.95878 0.9277 7.0735 3 Median 0.95878 0.9277 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86652 0.90977 NaN 1 0 Median 1.092 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6875500 3348800 3526700 1526900 791330 735590 0 0 0 4778400 2281600 2496900 570190 275890 294290 0 0 0 0 0 0 18345 1035 19121 95439;95440;95441 97112 97112 1 KTGKPMINLYTDK VGEFFKQIGIIKTNKKTGKPMINLYTDKDT NKKTGKPMINLYTDKDTGKPKGEATVSFDD K K T D K D 0 0 1 1 0 0 0 1 0 1 1 3 1 0 1 0 2 0 1 0 0 0 13 2 1507.8068 Q92804;A0A075B7D9 Q92804 265 277 TAF15 TATA-binding protein-associated factor 2N yes no 3 0.00082777 47.532 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.102 1.0428 29.002 4 Median 0.91348 0.93216 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4375 1.6619 NaN 1 0 Median 1.3293 1.1665 NaN 1 0 Median 0.78439 0.87448 NaN 1 0 Median NaN NaN NaN 0 0 Median 13666000 6109000 7557300 1140400 647280 493170 0 0 0 6538700 2693200 3845500 767630 279140 488490 5219500 2489400 2730100 0 0 0 18346 3559 19122 95442;95443;95444;95445 97113;97114;97115 97114 3 KTGNQHFGYLYGR FENHTVADRFLDFWRKTGNQHFGYLYGRYT WRKTGNQHFGYLYGRYTEHKDIPLGIRAEV R K T G R Y 0 1 1 0 0 1 0 3 1 0 1 1 0 1 0 0 1 0 2 0 0 0 13 1 1539.7583 Q8TAT6 Q8TAT6 243 255 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 3 0.0040088 32.624 By matching By MS/MS 1 1 2.4323 2.2242 93.253 2 Median NaN NaN NaN 0 0 Median 4.7157 4.3008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2545 1.1503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11355000 2388300 8966600 0 0 0 9588900 1674300 7914600 0 0 0 1766000 714030 1052000 0 0 0 0 0 0 18347 3456 19123 95446;95447 97116 97116 1 KTGQAPGYSYTAANK GKHKTGPNLHGLFGRKTGQAPGYSYTAANK KTGQAPGYSYTAANKNKGIIWGEDTLMEYL R K T N K N 3 0 1 0 0 1 0 2 0 0 0 2 0 0 1 1 2 0 2 0 0 0 15 1 1555.7631 C9JFR7;P99999 C9JFR7 40 54 CYCS Cytochrome c yes no 2;3 4.2629E-08 141.13 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.1882 1.0791 7.7284 8 Median 1.1629 1.089 9.0148 3 0 Median 1.2273 1.064 9.0512 2 0 Median 1.1557 1.1725 NaN 1 0 Median 1.2338 1.0349 2.2785 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64578000 29153000 35426000 12422000 5563300 6858800 20029000 9270800 10758000 7711000 3526300 4184700 24417000 10792000 13625000 0 0 0 0 0 0 18348 696 19124 95448;95449;95450;95451;95452;95453;95454;95455 97117;97118;97119;97120;97121;97122;97123;97124;97125 97122 9 KTGQPMINLYTDR VADYFKQIGIIKTNKKTGQPMINLYTDRET NKKTGQPMINLYTDRETGKLKGEATVSFDD K K T D R E 0 1 1 1 0 1 0 1 0 1 1 1 1 0 1 0 2 0 1 0 0 0 13 1 1535.7766 H3BPE7;P35637 H3BPE7 317 329 FUS RNA-binding protein FUS yes no 2;3 0.00017807 78.342 By MS/MS By MS/MS 2 2 0.9489 0.93634 83.75 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77088 0.81933 2.9456 2 0 Median 2.4129 2.2124 105.67 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43755000 20279000 23475000 0 0 0 0 0 0 32454000 18487000 13966000 11301000 1792000 9508800 0 0 0 0 0 0 18349 1221 19125 95456;95457;95458;95459 97126;97127;97128;97129;97130 97126 5 KTGQPMINLYTDRETGK VADYFKQIGIIKTNKKTGQPMINLYTDRET GQPMINLYTDRETGKLKGEATVSFDDPPSA K K T G K L 0 1 1 1 0 1 1 2 0 1 1 2 1 0 1 0 3 0 1 0 0 0 17 2 1950.9833 H3BPE7;P35637 H3BPE7 317 333 FUS RNA-binding protein FUS yes no 3;4 1.3979E-08 97.502 By MS/MS By MS/MS By matching 1 2 2 0.64667 0.74635 22.009 5 Median 0.64667 0.70005 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87472 0.99757 16.98 2 0 Median NaN NaN NaN 0 0 Median 0.58972 0.69494 10.093 2 0 Median NaN NaN NaN 0 0 Median 37082000 21137000 15945000 6873700 4414800 2458900 0 0 0 21861000 11797000 10064000 0 0 0 8347400 4925400 3422000 0 0 0 18350 1221 19126 95460;95461;95462;95463;95464 97131;97132;97133;97134 97133 4 KTGSQYDIQDAIDK ITGSDGSTRVVLVDRKTGSQYDIQDAIDKG RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS R K T D K G 1 0 0 3 0 2 0 1 0 2 0 2 0 0 0 1 1 0 1 0 0 0 14 1 1580.7682 P15924 P15924 2523 2536 DSP Desmoplakin yes yes 3 0.049665 12.023 By MS/MS 1 1.609 1.6346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.609 1.6346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 723290 266310 456970 0 0 0 0 0 0 0 0 0 723290 266310 456970 0 0 0 0 0 0 18351 2021 19127 95465 97135 97135 1 KTGTTIAGVVYK EADFAKRGYKLPKVRKTGTTIAGVVYKDGI KVRKTGTTIAGVVYKDGIVLGADTRATEGM R K T Y K D 1 0 0 0 0 0 0 2 0 1 0 2 0 0 0 0 3 0 1 2 0 0 12 1 1236.7078 Q99436;Q5TBG5 Q99436 41 52 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type yes no 2;3 0.0072058 56.729 By MS/MS By matching 3 1 1.026 0.99458 10.62 4 Median 1.0823 1.0491 8.9089 3 2 Plateau 1.2361 1.1142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6272400 2970900 3301500 5193100 2483700 2709400 1079300 487180 592110 0 0 0 0 0 0 0 0 0 0 0 0 18352 3744 19128 95466;95467;95468;95469 97136;97137;97138;97139 97136 4 KTHIQDNHDGTYTVAYVPDVTGR GLLAVQITDPEGKPKKTHIQDNHDGTYTVA DGTYTVAYVPDVTGRYTILIKYGGDEIPFS K K T G R Y 1 1 1 3 0 1 0 2 2 1 0 1 0 0 1 0 4 0 2 3 0 0 23 1 2586.2463 P21333;Q60FE5;A0A087WWY3 P21333 1593 1615 FLNA Filamin-A no no 3;4 2.4388E-35 129.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 3 1 0.84191 0.89299 19.332 17 Median 0.97223 0.96662 4.1067 5 0 Median 0.8202 0.76718 9.2283 5 0 Median 0.83437 0.94493 6.5885 3 0 Median 0.77401 0.74722 23.115 3 0 Median 0.47684 0.53954 NaN 1 0 Median NaN NaN NaN 0 0 Median 733210000 377860000 355350000 337390000 168260000 169130000 316070000 166660000 149410000 66960000 35818000 31141000 9471100 5331000 4140100 3315300 1798300 1517100 0 0 0 18353 2088;3120 19129 95470;95471;95472;95473;95474;95475;95476;95477;95478;95479;95480;95481;95482;95483;95484;95485;95486 97140;97141;97142;97143;97144;97145;97146;97147;97148;97149;97150;97151;97152;97153;97154;97155;97156;97157;97158;97159;97160;97161;97162;97163;97164;97165;97166;97167;97168;97169;97170;97171 97145 32 KTHQPSDEVGTSIEHPR SDLRRSEVPCAPMPKKTHQPSDEVGTSIEH HQPSDEVGTSIEHPREAEEVMDAGCQESAG K K T P R E 0 1 0 1 0 1 2 1 2 1 0 1 0 0 2 2 2 0 0 1 0 0 17 1 1916.9341 Q99575 Q99575 751 767 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 3;4 0.0077522 23.562 By matching By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1 0.93203 0.88492 33.7 7 Median 0.85661 0.88492 NaN 1 0 Median 1.3041 1.2339 47.855 2 0 Median 0.52233 0.59807 NaN 1 0 Median 1.2984 1.2478 NaN 1 0 Median 0.74172 0.82537 NaN 1 0 Median 1.1735 1.0449 NaN 1 0 Median 7123000 3327800 3795200 526210 214740 311470 4848500 2095900 2752700 670610 480230 190380 294970 110060 184910 670320 370160 300160 112340 56783 55558 18354 3754 19130 95487;95488;95489;95490;95491;95492;95493 97172;97173 97173 2 KTIPSWATLSASQLAR KDEKDQSKEKEKKVKKTIPSWATLSASQLA TIPSWATLSASQLARAQKQTPMASSPRPKM K K T A R A 3 1 0 0 0 1 0 0 0 1 2 1 0 0 1 3 2 1 0 0 0 0 16 1 1728.9523 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 131 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 0.024659 15.635 By MS/MS By matching 3 1 0.67592 0.72159 27.653 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6697 0.70705 7.8785 3 0 Median 1.2799 1.1825 NaN 1 0 Median 7665400 4496700 3168700 0 0 0 0 0 0 0 0 0 0 0 0 7495800 4429000 3066900 169570 67682 101890 18355 3075 19131 95494;95495;95496;95497 97174;97175 97174 2 KTIQMGSFR LVDELEWEIAQVDPKKTIQMGSFRINPDGS AQVDPKKTIQMGSFRINPDGSQSVVEVPYA K K T F R I 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 9 1 1066.5593 F8W031;F8VXJ7;Q9Y2B0;F8VP03;H0YIH9;F8W1U5 F8W031 49 57 CNPY2 Protein canopy homolog 2 yes no 2 0.025416 50.04 By MS/MS By MS/MS 1 1 1.7364 1.6206 63.7 2 Median 2.5755 2.5427 NaN 1 1 Median 1.1706 1.0329 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13706000 3844300 9862000 10649000 2514300 8134600 3057300 1329900 1727400 0 0 0 0 0 0 0 0 0 0 0 0 18356 1078 19132 95498;95499 97176;97177 97176 2 KTIVTDVFQGSMR LNALHSALGGTKKKKKTIVTDVFQGSMRIF KKKTIVTDVFQGSMRIFTKKLPHPDLPAEE K K T M R I 0 1 0 1 0 1 0 1 0 1 0 1 1 1 0 1 2 0 0 2 0 0 13 1 1480.7708 B9A018;Q53GS9;A0A087X1B2 B9A018 342 354 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.044841 14.084 By MS/MS 1 1.0447 1.11 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0447 1.11 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2358600 1227400 1131200 0 0 0 0 0 0 2358600 1227400 1131200 0 0 0 0 0 0 0 0 0 18357 654 19133 95500 97178 97178 1 KTKPYIQVDIGGGQTK VQQDIKFLPFKVVEKKTKPYIQVDIGGGQT TKPYIQVDIGGGQTKTFAPEEISAMVLTKM K K T T K T 0 0 0 1 0 2 0 3 0 2 0 3 0 0 1 0 2 0 1 1 0 0 16 2 1731.9519 P11021 P11021 123 138 HSPA5 78 kDa glucose-regulated protein yes yes 3;4 5.9351E-07 88.319 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 1 1 1.0191 1.0267 18.612 12 Median 1.0332 1.0224 3.9377 3 0 Plateau 1.1378 1.0968 21.413 3 0 Median 0.7913 0.91015 31.771 2 0 Median 1.1214 1.082 14.118 2 0 Median 0.92474 1.031 NaN 1 0 Median 1.3361 1.4517 NaN 1 0 Median 83513000 40563000 42950000 35389000 18217000 17171000 24754000 11508000 13245000 11961000 5796300 6165100 5821400 2313700 3507700 3733000 1898200 1834800 1855200 829670 1025500 18358 1948 19134 95501;95502;95503;95504;95505;95506;95507;95508;95509;95510;95511;95512 97179;97180;97181;97182;97183;97184;97185;97186;97187;97188;97189;97190;97191 97186 13 KTLDELSQGTTTVK QVSARDLFRAQLISRKTLDELSQGTTTVKE RKTLDELSQGTTTVKEVAEMDSVKRSLEGG R K T V K E 0 0 0 1 0 1 1 1 0 0 2 2 0 0 0 1 4 0 0 1 0 0 14 1 1519.8094 P58107;A0A075B730 P58107 1542 1555 EPPK1 Epiplakin yes no 2;3 1.1374E-08 152.99 By MS/MS By MS/MS 2 1 1.1857 1.2822 3.7177 3 Median 1.1457 1.2469 4.7389 2 0 Median 1.3462 1.2822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15929000 6562700 9366400 11259000 4881100 6377600 4670400 1681500 2988800 0 0 0 0 0 0 0 0 0 0 0 0 18359 2520 19135 95513;95514;95515 97192;97193;97194;97195;97196;97197 97194 6 KTLDMIK QQHKLLKVIRKKLVRKTLDMIKKIADDKYN VIRKKLVRKTLDMIKKIADDKYNDTFWKEF R K T I K K 0 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 1 0 0 0 0 0 7 1 847.48372 P14625 P14625 467 473 HSP90B1 Endoplasmin yes yes 2 0.028873 60.478 By matching By MS/MS 2 2 1.067 1.2764 11.773 4 Linear 0.98293 1.0291 8.2219 2 0 Median 1.2051 1.1487 15.073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26303000 11838000 14464000 3913100 1753300 2159800 22389000 10085000 12305000 0 0 0 0 0 0 0 0 0 0 0 0 18360 2006 19136 95516;95517;95518;95519 97198;97199 97199 2 KTLEEEAKTHEAQIQEMR QELRSKREQEVNILKKTLEEEAKTHEAQIQ EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K K T M R Q 2 1 0 0 0 2 5 0 1 1 1 2 1 0 0 0 2 0 0 0 0 0 18 2 2170.0688 P35579 P35579 1174 1191 MYH9 Myosin-9 yes yes 3;4 1.9706E-14 116.82 By MS/MS 2 1.0961 1.1587 5.8813 2 Median 1.0961 1.1587 5.8813 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50377000 23659000 26718000 50377000 23659000 26718000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18361 2244 19137 95520;95521 97200;97201;97202 97202 3 KTLTTVQGIADDYDK TEDYIHIRIQQRNGRKTLTTVQGIADDYDK KTLTTVQGIADDYDKKKLVKAFKKKFACNG R K T D K K 1 0 0 3 0 1 0 1 0 1 1 2 0 0 0 0 3 0 1 1 0 0 15 1 1666.8414 K7EM18;P41567;O60739 K7EM18 42 56 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 3 0.0028788 28.58 By MS/MS 1 1.2506 1.2742 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2506 1.2742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4244700 1739100 2505600 0 0 0 0 0 0 4244700 1739100 2505600 0 0 0 0 0 0 0 0 0 18362 1380 19138 95522 97203;97204 97204 2 KTNNFSAFLANVR APHLEGLAEFQENVRKTNNFSAFLANVRKA VRKTNNFSAFLANVRKAFTATVYN______ R K T V R K 2 1 3 0 0 0 0 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 1 1480.7787 Q9HBM1 Q9HBM1 203 215 SPC25 Kinetochore protein Spc25 yes yes 3 0.005668 45.28 By MS/MS 1 0.94044 0.98687 NaN 1 Median 0.94044 0.98687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4641200 2498200 2143000 4641200 2498200 2143000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18363 4021 19139 95523 97205 97205 1 KTNPEIQSTLR RRMAEAELVQEGKARKTNPEIQSTLRKRLY GKARKTNPEIQSTLRKRLYLQ_________ R K T L R K 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 2 0 0 0 0 0 11 1 1285.699 P31944 P31944 226 236 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 3 0.0010236 67.999 By MS/MS By MS/MS By MS/MS 1 4 2 0.050929 0.044789 115.03 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.062594 0.058335 123.47 4 4 Median NaN NaN NaN 0 0 Median 0.029081 0.024335 65.64 2 2 Median 8054500 7765400 289120 0 0 0 522790 522790 0 0 0 0 4552600 4375500 177070 0 0 0 2979100 2867100 112050 18364 2209 19140 95524;95525;95526;95527;95528;95529;95530 97206;97207;97208;97209;97210;97211;97212;97213 97212 8 KTNQLQYMQNVVVK NPPPPEVSNPSKPGRKTNQLQYMQNVVVKT RKTNQLQYMQNVVVKTLWKHQFAWPFYQPV R K T V K T 0 0 2 0 0 3 0 0 0 0 1 2 1 0 0 0 1 0 1 3 0 0 14 1 1691.9029 Q15059;A9J571 Q15059 35 48 BRD3 Bromodomain-containing protein 3 yes no 2;3 1.4852E-05 84.297 By MS/MS By matching By matching 2 1 1 0.84504 0.96538 16.402 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84504 0.96538 2.3914 2 0 Median 0.71057 0.7595 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2436 1.1284 NaN 1 0 Median 19870000 10582000 9288400 0 0 0 0 0 0 18955000 10168000 8786800 450540 237950 212590 0 0 0 464650 175650 289000 18365 2923 19141 95531;95532;95533;95534 97214;97215;97216;97217 97215 4 KTPANEKVEIQK NESEDEIPQLVPIGKKTPANEKVEIQKHAT IGKKTPANEKVEIQKHATGKKSPAKSPNPS K K T Q K H 1 0 1 0 0 1 2 0 0 1 0 3 0 0 1 0 1 0 0 1 0 0 12 2 1383.7722 O76021;J3QSV6 O76021 374 385 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.00050143 51.841 By matching By matching By MS/MS By MS/MS 1 1 4 3 0.87558 0.96 11.284 9 Median NaN NaN NaN 0 0 Median 0.85823 0.82401 NaN 1 0 Median 0.87558 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84871 0.95838 3.5947 4 0 Median 0.98011 0.96 15.928 3 0 Median 11921000 6112500 5808900 0 0 0 1117200 556570 560640 82767 42762 40005 0 0 0 8670900 4474500 4196400 2050500 1038700 1011900 18366 1716 19142 95535;95536;95537;95538;95539;95540;95541;95542;95543 97218;97219;97220;97221;97222 97222 5 KTPEELLR ______________________________ DLLFGRRKTPEELLRQNQRALNRAMRELDR R K T L R Q 0 1 0 0 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 8 1 984.5604 O43633;M0R1L7;M0QXX8 O43633 9 16 CHMP2A Charged multivesicular body protein 2a yes no 2 0.03295 44.349 By MS/MS By MS/MS 1 2 0.97021 1.0088 17.988 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97021 1.0088 NaN 1 0 Median 0.87818 0.80265 17.285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10158000 4658600 5499700 0 0 0 0 0 0 6802900 3065500 3737400 3355500 1593100 1762400 0 0 0 0 0 0 18367 1579 19143 95544;95545;95546 97223;97224;97225;97226 97224 4 KTPPAPSPFDLPELK KILKEMCDVEQVLSKKTPPAPSPFDLPELK KTPPAPSPFDLPELKHVATEYQENKAPGKK K K T L K H 1 0 0 1 0 0 1 0 0 0 2 2 0 1 5 1 1 0 0 0 0 0 15 1 1635.8872 O95239 O95239 1180 1194 KIF4A Chromosome-associated kinesin KIF4A yes yes 2;3 0.00050675 57.836 By MS/MS 2 0.50755 0.58379 26.091 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50755 0.58379 26.091 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12884000 8736100 4148200 0 0 0 0 0 0 12884000 8736100 4148200 0 0 0 0 0 0 0 0 0 18368 1757 19144 95547;95548 97227;97228 97227 2 KTPQGPPEIYSDTQFPSLQSTAK SGVYRPPGARLTTTRKTPQGPPEIYSDTQF IYSDTQFPSLQSTAKHVESRKDKEMEKSFE R K T A K H 1 0 0 1 0 3 1 1 0 1 1 2 0 1 4 3 3 0 1 0 0 0 23 1 2519.2544 Q9UKY7;H0Y8K3;D6R9V8;D6RFH2;D6RDN0 Q9UKY7 181 203 CDV3 Protein CDV3 homolog yes no 3 0.0028991 31.473 By MS/MS By MS/MS By matching 2 1 1 0.54037 0.52202 13.968 4 Median 0.56328 0.53686 21.835 2 1 Median NaN NaN NaN 0 0 Median 0.53473 0.56041 NaN 1 1 Median 0.54608 0.48626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17130000 10845000 6285100 13302000 8478600 4822900 0 0 0 3560100 2244300 1315900 268280 121880 146400 0 0 0 0 0 0 18369 4318 19145 95549;95550;95551;95552 97229;97230;97231 97230 3 KTPSKPPAQLSPSVPK SPKGKRKLDLNQEEKKTPSKPPAQLSPSVP TPSKPPAQLSPSVPKRPKLPAPTRTPATAP K K T P K R 1 0 0 0 0 1 0 0 0 0 1 3 0 0 5 3 1 0 0 1 0 0 16 2 1660.9512 F5H8D7;P18887;M0QYS5 F5H8D7 225 240 XRCC1 DNA repair protein XRCC1 yes no 3;4 0.00019968 44.567 By MS/MS By MS/MS 2 2 0.61482 0.65596 26.15 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48751 0.56362 41.587 2 0 Median 0.62345 0.65596 9.5853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14942000 10038000 4904500 0 0 0 0 0 0 9444800 6656800 2788000 5497400 3380900 2116500 0 0 0 0 0 0 18370 1047 19146 95553;95554;95555;95556 97232;97233;97234;97235;97236;97237 97235 6 KTPVIVTLK PGVPMEIVLNKESRRKTPVIVTLKENERFF NKESRRKTPVIVTLKENERFFGDSAASMAI R K T L K E 0 0 0 0 0 0 0 0 0 1 1 2 0 0 1 0 2 0 0 2 0 0 9 1 997.65357 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06;A0A087WW13;A0A087X214 A0A087X054 67 75 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.019196 45.368 By matching By MS/MS 1 1 0.964 0.95705 1.9476 2 Median 0.89066 0.94396 NaN 1 0 Median 1.0434 0.97032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7143700 3859900 3283800 1111400 597180 514240 6032300 3262700 2769600 0 0 0 0 0 0 0 0 0 0 0 0 18371 101 19147 95557;95558 97238 97238 1 KTPVIVTLKENER PGVPMEIVLNKESRRKTPVIVTLKENERFF RRKTPVIVTLKENERFFGDSAASMAIKNPK R K T E R F 0 1 1 0 0 0 2 0 0 1 1 2 0 0 1 0 2 0 0 2 0 0 13 2 1525.8828 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06;A0A087WW13;A0A087X214 A0A087X054 67 79 HYOU1 Hypoxia up-regulated protein 1 yes no 3 0.0081805 28.297 By MS/MS 1 1.0832 1.2313 NaN 1 Median 1.0832 1.2313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1759500 814360 945130 1759500 814360 945130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18372 101 19148 95559 97239;97240 97239 2 KTPVKEPNSENVDISSGGGVTGWK NIEKAFLTLAEDILRKTPVKEPNSENVDIS ENVDISSGGGVTGWKSKCC___________ R K T W K S 0 0 2 1 0 0 2 4 0 1 0 3 0 0 2 3 2 1 0 3 0 0 24 2 2485.2449 P61026 P61026 173 196 RAB10 Ras-related protein Rab-10 yes yes 3;4 9.5661E-12 51.398 By MS/MS By MS/MS 3 2 0.81593 0.90575 13.3 5 Median 0.79538 0.83998 13.651 3 0 Median 0.99039 0.96916 9.5697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60642000 34184000 26458000 51608000 29953000 21655000 9034300 4230700 4803600 0 0 0 0 0 0 0 0 0 0 0 0 18373 2540 19149 95560;95561;95562;95563;95564 97241;97242;97243;97244;97245;97246 97244 5 KTQEQDEEVGLGTEEDPSLPALLTQPR EDMQEERNPHREGARKTQEQDEEVGLGTEE TEEDPSLPALLTQPRKPTHSQEPQGPEAME R K T P R K 1 1 0 2 0 3 5 2 0 0 4 1 0 0 3 1 3 0 0 1 0 0 27 1 2979.4673 O95602 O95602 1458 1484 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 5.4595E-09 58.877 By MS/MS 1 0.52308 0.62716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52308 0.62716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7689800 5909500 1780300 0 0 0 0 0 0 7689800 5909500 1780300 0 0 0 0 0 0 0 0 0 18374 1781 19150 95565 97247 97247 1 KTQEQLALEMAELTAR EEAKEALLQASRDQKKTQEQLALEMAELTA TQEQLALEMAELTARISQLEMARQKKESEA K K T A R I 3 1 0 0 0 2 3 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 16 1 1830.9509 P26038 P26038 412 427 MSN Moesin yes yes 2;3 4.5358E-11 110.38 By MS/MS By MS/MS By MS/MS By matching 5 3 3 3 1.106 1.0497 19.222 14 Median 1.1147 1.1468 15.945 5 0 Median 1.0973 1.0171 13.739 3 0 Median 0.9465 1.0042 12.543 3 1 Median 1.1815 1.0833 38.64 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126320000 59124000 67201000 69216000 33305000 35911000 8740100 3786200 4954000 47080000 21420000 25660000 1288000 612350 675680 0 0 0 0 0 0 18375 2139 19151;19152 95566;95567;95568;95569;95570;95571;95572;95573;95574;95575;95576;95577;95578;95579 97248;97249;97250;97251;97252;97253;97254;97255;97256;97257;97258;97259 97250 901 11 KTQNDVLHAENVK QALSSELAQARDETKKTQNDVLHAENVKAG TKKTQNDVLHAENVKAGRDKYKTLRQIRQG K K T V K A 1 0 2 1 0 1 1 0 1 0 1 2 0 0 0 0 1 0 0 2 0 0 13 1 1494.7791 P35241;A0A2R8Y5S7;A0A2R8Y4H6 P35241 544 556 RDX Radixin yes no 3 0.0010287 41.092 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1144 1.1291 10.495 5 Median 0.91043 0.94276 NaN 1 0 Median 1.1581 1.1031 3.2967 2 0 Median 1.0821 1.2201 NaN 1 0 Median 1.2375 1.2089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10953000 5041300 5911600 1529200 704460 824710 3764800 1797000 1967800 4391500 2007400 2384100 1267400 532430 734940 0 0 0 0 0 0 18376 2235 19153 95580;95581;95582;95583;95584 97260;97261;97262;97263;97264;97265;97266 97261 7 KTQYEEHIYR SFPSWSEDSTFVSSKKTQYEEHIYRCEDER FVSSKKTQYEEHIYRCEDERFELDVVLETN K K T Y R C 0 1 0 0 0 1 2 0 1 1 0 1 0 0 0 0 1 0 2 0 0 0 10 1 1365.6677 Q96ST3 Q96ST3 602 611 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.008358 32.606 By MS/MS By matching 1 1 0.90813 0.95408 6.7694 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8754 1.0009 NaN 1 0 Median 0.94209 0.90948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1293900 578790 715140 0 0 0 0 0 0 1010500 427950 582530 283450 150840 132610 0 0 0 0 0 0 18377 3737 19154 95585;95586 97267 97267 1 KTRPDGNCFYR QQKIKDLHKKYSYIRKTRPDGNCFYRAFGF SYIRKTRPDGNCFYRAFGFSHLEALLDDSK R K T Y R A 0 2 1 1 1 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 0 0 11 2 1412.6619 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 84 94 OTUB1 Ubiquitin thioesterase OTUB1 yes no 3 0.024963 24.291 By MS/MS 1 0.86298 1.0124 NaN 1 Median NaN NaN NaN 0 0 Median 0.86298 1.0124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 894480 449760 444720 0 0 0 894480 449760 444720 0 0 0 0 0 0 0 0 0 0 0 0 18378 1322 19155 95587 97268;97269 97269 2 KTSFGSLKDEDR LLGWSLPARVSTAPKKTSFGSLKDEDRIFT APKKTSFGSLKDEDRIFTNLYGRHDWRLKG K K T D R I 0 1 0 2 0 0 1 1 0 0 1 2 0 1 0 2 1 0 0 0 0 0 12 2 1381.6838 G3V0I5;P49821;E9PPS5;E9PMX3 G3V0I5 22 33 NDUFV1 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial yes no 3 0.0012349 45.28 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1679 1.2158 21.807 5 Median 1.0226 1.103 13.779 2 0 Median 1.5233 1.5609 NaN 1 0 Median 0.84622 0.98179 NaN 1 0 Median 1.3757 1.5019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6998100 3178300 3819800 3312500 1633900 1678600 2231100 841620 1389500 662350 344620 317720 792210 358150 434060 0 0 0 0 0 0 18379 1100 19156 95588;95589;95590;95591;95592 97270;97271;97272 97272 3 KTSQLLETLNQLSTHTHVVDITR HEGPGSELPAGALYRKTSQLLETLNQLSTH LNQLSTHTHVVDITRTSPAAKSPSAQLMEQ R K T T R T 0 1 1 1 0 2 1 0 2 1 4 1 0 0 0 2 5 0 0 2 0 0 23 1 2633.4137 E7EX90;Q14203;E7EWF7 E7EX90 1129 1151 DCTN1 Dynactin subunit 1 yes no 4 0.006564 21.291 By matching By MS/MS 1 1 1.0107 0.97824 8.6368 2 Median 0.91388 0.92028 NaN 1 0 Median 1.1178 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17216000 8383000 8832900 7582900 3985700 3597200 9633000 4397200 5235700 0 0 0 0 0 0 0 0 0 0 0 0 18380 906 19157 95593;95594 97273 97273 1 KTSYAQHQQVR LFCVGFTKKRNNQIRKTSYAQHQQVRQIRK NQIRKTSYAQHQQVRQIRKKMMEIMTREVQ R K T V R Q 1 1 0 0 0 3 0 0 1 0 0 1 0 0 0 1 1 0 1 1 0 0 11 1 1344.6898 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6;D6RAS7 P61247 152 162 RPS3A 40S ribosomal protein S3a yes no 3 0.0068235 32.008 By MS/MS 1 1.1101 1.0915 NaN 1 Median 1.1101 1.0915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 561450 276110 285340 561450 276110 285340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18381 2553 19158 95595 97274;97275 97274 2 KTTDTASVQNEAKLDEILK KPTANKKCDLISIPKKTTDTASVQNEAKLD TASVQNEAKLDEILKEIKSIKDTICNQDER K K T L K E 2 0 1 2 0 1 2 0 0 1 2 3 0 0 0 1 3 0 0 1 0 0 19 2 2103.1059 Q9ULV4;B4E3S0;H0YHL7 Q9ULV4 428 446 CORO1C Coronin-1C;Coronin yes no 3 9.8802E-10 78.794 By MS/MS 1 1.1988 1.1523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1988 1.1523 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10390000 4685100 5704700 0 0 0 0 0 0 0 0 0 10390000 4685100 5704700 0 0 0 0 0 0 18382 4329 19159 95596 97276 97276 1 KTTHFVEGGDAGNREDQINR LWPFKLSSPRGGMKKKTTHFVEGGDAGNRE VEGGDAGNREDQINRLIRRMN_________ K K T N R L 1 2 2 2 0 1 2 3 1 1 0 1 0 1 0 0 2 0 0 1 0 0 20 2 2243.0679 P18124;A8MUD9 P18124 223 242 RPL7 60S ribosomal protein L7 yes no 3;4 8.6294E-09 64.507 By matching By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 3 3 2 1.2098 1.3085 21.312 12 Median 1.0845 1.1367 NaN 1 0 Median 1.141 1.1893 13.736 2 0 Median 1.1599 1.3622 NaN 1 0 Median 1.4611 1.3063 8.2974 3 0 Median 1.091 1.1685 45.577 3 0 Median 1.3368 1.3548 1.2862 2 0 Median 43674000 19178000 24495000 6877400 3165500 3711900 6543100 2724600 3818500 4372300 1879600 2492600 14504000 6045200 8458700 7636300 3818100 3818200 3740700 1545200 2195400 18383 2056 19160 95597;95598;95599;95600;95601;95602;95603;95604;95605;95606;95607;95608 97277;97278;97279;97280;97281;97282;97283;97284;97285;97286;97287;97288;97289;97290 97282 14 KTTIENIQLPHTLLSR VLAAANPIESQWNPKKTTIENIQLPHTLLS TTIENIQLPHTLLSRFDLIFLLLDPQDEAY K K T S R F 0 1 1 0 0 1 1 0 1 2 3 1 0 0 1 1 3 0 0 0 0 0 16 1 1863.0578 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 578 593 MCM4 DNA replication licensing factor MCM4 yes no 3 0.025649 15.155 By MS/MS 1 0.78872 0.82125 NaN 1 Median 0.78872 0.82125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7331400 4062000 3269400 7331400 4062000 3269400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18384 441 19161 95609 97291;97292 97291 2 KTTLQVDTLNAELAAER EEEQSNMELLNDRFRKTTLQVDTLNAELAA TLQVDTLNAELAAERSAAQKSDNARQQLER R K T E R S 3 1 1 1 0 1 2 0 0 0 3 1 0 0 0 0 3 0 0 1 0 0 17 1 1871.9953 P35580 P35580 1761 1777 MYH10 Myosin-10 yes yes 2;3 3.6121E-18 171.76 By MS/MS By MS/MS By MS/MS 2 2 1 1.0144 1.0115 22.379 5 Median 1.0474 1.0492 5.1714 2 0 Median 1.154 1.0977 16.59 2 0 Median 0.56614 0.67857 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62036000 30725000 31312000 39001000 18119000 20882000 9854700 4023500 5831200 13181000 8582400 4598100 0 0 0 0 0 0 0 0 0 18385 2245 19162 95610;95611;95612;95613;95614 97293;97294;97295;97296;97297;97298 97296 6 KTTTLSGTAPAAGVVPSR ADLSRPKSTSTSSMKKTTTLSGTAPAAGVV TLSGTAPAAGVVPSRVKATPMPSRPSTTPF K K T S R V 3 1 0 0 0 0 0 2 0 0 1 1 0 0 2 2 4 0 0 2 0 0 18 1 1712.9421 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 2016 2033 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 1.195E-06 75.97 By MS/MS By MS/MS By MS/MS 2 2 5 0.92645 0.86936 35.68 9 Median 0.75273 0.76745 44.956 2 1 Median NaN NaN NaN 0 0 Median 1.3807 1.5638 2.8733 2 1 Median 0.81038 0.77879 11.532 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29697000 14942000 14754000 4881500 2748400 2133100 0 0 0 10252000 4051100 6200400 14564000 8142900 6421000 0 0 0 0 0 0 18386 895 19163 95615;95616;95617;95618;95619;95620;95621;95622;95623 97299;97300;97301;97302;97303;97304;97305 97302 7 KTTVLAMDQVPR YPAQNPELLNKLSQRKTTVLAMDQVPRVTI SQRKTTVLAMDQVPRVTIAQGYDALSSMAN R K T P R V 1 1 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 0 0 2 0 0 12 1 1357.7388 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7;D6RCR6 Q13423 171 182 NNT NAD(P) transhydrogenase, mitochondrial yes no 3 1.0354E-06 104.24 By MS/MS By MS/MS 2 1 0.96367 1.0348 36.716 3 Plateau 0.64073 0.65784 17.987 2 0 Median 1.297 1.1945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46373000 23140000 23233000 21180000 12737000 8443500 25192000 10403000 14789000 0 0 0 0 0 0 0 0 0 0 0 0 18387 2814 19164 95624;95625;95626 97306;97307;97308;97309;97310 97309 5 KTTVLDVMR GYTPLTTDQSVASVRKTTVLDVMRRLLQPK SVASVRKTTVLDVMRRLLQPKNVMVSTGRD R K T M R R 0 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 2 0 0 9 1 1061.5903 P23258;Q9NRH3 P23258 287 295 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 2 0.0022532 79.893 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.2757 1.1937 13.096 4 Median 1.0057 1.0047 NaN 1 0 Median 1.2254 1.1199 NaN 1 0 Median 1.328 1.3454 NaN 1 0 Median 1.3354 1.2723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47220000 19657000 27563000 4246200 1824900 2421300 1774700 643580 1131100 6825900 2683400 4142500 34373000 14505000 19868000 0 0 0 0 0 0 18388 2108 19165 95627;95628;95629;95630 97311;97312;97313;97314;97315 97315 5 KTVELPLNKEEIER SLATVKKQLSRVKSKKTVELPLNKEEIERI KKTVELPLNKEEIERIHREVAFNKTAQVLS K K T E R I 0 1 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 1 0 0 14 2 1696.9359 Q9BVJ6 Q9BVJ6 114 127 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3 0.0003074 54.898 By MS/MS 1 0.97659 1.1508 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97659 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median 4243900 2121600 2122300 0 0 0 0 0 0 0 0 0 0 0 0 4243900 2121600 2122300 0 0 0 18389 3855 19166 95631 97316 97316 1 KTVLGTPEVLLGALPGAGGTQR EVAISCQYRIATKDRKTVLGTPEVLLGALP EVLLGALPGAGGTQRLPKMVGVPAALDMML R K T Q R L 2 1 0 0 0 1 1 5 0 0 4 1 0 0 2 0 3 0 0 2 0 0 22 1 2134.211 H0YFD6;P40939;A0A2R8YG21;A0A2R8Y688 H0YFD6 166 187 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 0.00019287 27.72 By MS/MS By MS/MS By MS/MS 1 1 1 0.80262 0.81863 26.727 3 Median 0.80262 0.81863 NaN 1 0 Median 1.1755 1.1771 NaN 1 0 Median 0.65767 0.69896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5285300 3005300 2280000 1634400 1111200 523210 1584100 753740 830370 2066700 1140300 926410 0 0 0 0 0 0 0 0 0 18390 1180 19167 95632;95633;95634 97317;97318;97319 97318 3 KTVLQLSLR DLQKIYEANAKRFSRKTVLQLSLRILDILE AKRFSRKTVLQLSLRILDILEYIHEHEYVH R K T L R I 0 1 0 0 0 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 9 1 1056.6655 Q99986;H0YJ50 Q99986 152 160 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.00083372 111.82 By MS/MS By MS/MS By matching By MS/MS 2 2 1 3 1.0832 1.0737 7.9069 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0299 1.1084 7.5303 2 0 Median 1.2413 1.1311 4.3356 2 0 Median 1.0742 1.1013 NaN 1 0 Median 1.0923 0.98512 2.2321 3 0 Median 159670000 75083000 84584000 0 0 0 0 0 0 59376000 28156000 31220000 80857000 37467000 43390000 9196900 4223500 4973500 10238000 5236600 5001500 18391 3775 19168 95635;95636;95637;95638;95639;95640;95641;95642 97320;97321;97322;97323;97324 97321 5 KTVQGPPTSDDIFER GVHSSVASATSVATKKTVQGPPTSDDIFER KTVQGPPTSDDIFEREYKYGAHNYHPLPVA K K T E R E 0 1 0 2 0 1 1 1 0 1 0 1 0 1 2 1 2 0 0 1 0 0 15 1 1688.837 P04181 P04181 32 46 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3 8.0813E-05 54.501 By MS/MS By MS/MS 1 1 0.97609 0.98031 28.377 2 Median 0.74861 0.80208 NaN 1 0 Median 1.2727 1.1981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15241000 7127500 8113800 8183200 4195000 3988300 7058100 2932600 4125600 0 0 0 0 0 0 0 0 0 0 0 0 18392 1846 19169 95643;95644 97325;97326 97325 2 KTVTAMDVVYALK NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ KRKTVTAMDVVYALKRQGRTLYGFGG____ R K T L K R 2 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 13 1 1437.7901 P62805 P62805 80 92 HIST1H4A Histone H4 yes yes 2;3 6.4205E-07 124.06 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 4 3 20 17 1.0213 1.0558 26.373 46 Median 1.2013 1.125 21.633 2 0 Median 1.5177 1.3157 19.466 4 0 Median 0.96718 0.97994 9.6383 3 0 Median NaN NaN NaN 0 0 Median 0.91577 0.93804 18.285 20 1 Median 1.3387 1.1405 30.931 17 0 Median 3834900000 1691800000 2143100000 8568600 3695900 4872700 6051000 2478400 3572700 19136000 9857600 9278300 0 0 0 703990000 366060000 337930000 3097200000 1309700000 1787400000 18393 2597 19170;19171 95645;95646;95647;95648;95649;95650;95651;95652;95653;95654;95655;95656;95657;95658;95659;95660;95661;95662;95663;95664;95665;95666;95667;95668;95669;95670;95671;95672;95673;95674;95675;95676;95677;95678;95679;95680;95681;95682;95683;95684;95685;95686;95687;95688;95689;95690 97327;97328;97329;97330;97331;97332;97333;97334;97335;97336;97337;97338;97339;97340;97341;97342;97343;97344;97345;97346;97347;97348;97349;97350;97351;97352;97353;97354;97355;97356;97357;97358;97359;97360;97361;97362;97363;97364;97365;97366;97367 97330 1264 41 KTVTAMDVVYALKR NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ RKTVTAMDVVYALKRQGRTLYGFGG_____ R K T K R Q 2 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 14 2 1593.8912 P62805 P62805 80 93 HIST1H4A Histone H4 yes yes 2;3;4 1.0595E-09 153.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 26 8 0.96223 1.0891 16.385 41 Median 1.1504 1.2463 NaN 1 0 Median 1.1489 1.0414 50.705 2 0 Median 0.89102 1.0225 22.751 5 2 Median NaN NaN NaN 0 0 Median 0.94946 1.0895 12.374 25 1 Median 1.3942 1.0868 16.061 8 0 Median 2888400000 1351800000 1536500000 21970000 10072000 11899000 9396400 3439500 5956900 52798000 24545000 28253000 0 0 0 1817600000 904550000 913100000 986550000 409230000 577320000 18394 2597 19172;19173 95691;95692;95693;95694;95695;95696;95697;95698;95699;95700;95701;95702;95703;95704;95705;95706;95707;95708;95709;95710;95711;95712;95713;95714;95715;95716;95717;95718;95719;95720;95721;95722;95723;95724;95725;95726;95727;95728;95729;95730;95731;95732 97368;97369;97370;97371;97372;97373;97374;97375;97376;97377;97378;97379;97380;97381;97382;97383;97384;97385;97386;97387;97388;97389;97390;97391;97392;97393;97394;97395;97396;97397;97398;97399;97400;97401;97402;97403;97404;97405;97406;97407;97408;97409;97410;97411;97412;97413;97414;97415;97416;97417;97418;97419;97420;97421;97422;97423;97424;97425 97379 1264 58 KTWTVVDAK IRIAAYKSILQERVKKTWTVVDAKTLKKED LQERVKKTWTVVDAKTLKKEDIQKETVYCL K K T A K T 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 2 1 0 2 0 0 9 1 1046.576 P13010 P13010 274 282 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.023611 51.276 By MS/MS By MS/MS 1 1 0.93049 0.97349 13.204 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79139 0.88671 NaN 1 1 Median 1.094 1.0688 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11046000 5401000 5644700 0 0 0 0 0 0 7313000 3750900 3562100 3732700 1650100 2082600 0 0 0 0 0 0 18395 1986 19174 95733;95734 97426;97427 97427 2 KTYDLLFK ______________________________ ______________________________ K K T F K L 0 0 0 1 0 0 0 0 0 0 2 2 0 1 0 0 1 0 1 0 0 0 8 1 1026.575 P61026 P61026 4 11 RAB10 Ras-related protein Rab-10 yes yes 2 0.01084 66.27 By MS/MS 2 0.90621 0.95069 21.593 2 Median 0.90621 0.95069 21.593 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15199000 8228700 6970300 15199000 8228700 6970300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18396 2540 19175 95735;95736 97428 97428 1 KTYDSYLGDDYVR LLFRDDTKCLASIAKKTYDSYLGDDYVRAM AKKTYDSYLGDDYVRAMTNLRQCSTSKLLE K K T V R A 0 1 0 3 0 0 0 1 0 0 1 1 0 0 0 1 1 0 3 1 0 0 13 1 1593.7311 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 670 682 yes no 2;3 0.00014715 79.466 By MS/MS 2 0.013655 0.014027 37.813 2 Median 0.013655 0.014027 37.813 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25445000 25120000 325510 25445000 25120000 325510 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 18397 769 19176 95737;95738 97429;97430 97429 2 KVAAISVAQR AGFSQHGMIGVTQPRKVAAISVAQRVAEEM VTQPRKVAAISVAQRVAEEMKCTLGSKVGY R K V Q R V 3 1 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 2 0 0 10 1 1041.6295 Q8IX18;J3KTK0;J3KSW6 Q8IX18 108 117 DHX40 Probable ATP-dependent RNA helicase DHX40 yes no 2 0.0284 37.191 By MS/MS 1 1.1256 1.13 NaN 1 Median NaN NaN NaN 0 0 Median 1.1256 1.13 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 773140 323440 449700 0 0 0 773140 323440 449700 0 0 0 0 0 0 0 0 0 0 0 0 18398 3332 19177 95739 97431 97431 1 KVACIGAWHPAR WHTKKLPRKTHRGLRKVACIGAWHPARVAF GLRKVACIGAWHPARVAFSVARAGQKGYHH R K V A R V 3 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 1 0 0 12 1 1364.7136 P39023;G5E9G0;H7C422;B5MCW2;Q92901 P39023 250 261 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 3 0.00017699 61.435 By MS/MS By matching 2 1 0.97718 0.94255 3.1006 3 Median NaN NaN NaN 0 0 Median 0.99048 0.93118 4.2717 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91101 0.94255 NaN 1 0 Median NaN NaN NaN 0 0 Median 20913000 10602000 10311000 0 0 0 16339000 8218300 8120400 0 0 0 0 0 0 4574500 2384000 2190500 0 0 0 18399 2281 19178 95740;95741;95742 97432;97433;97434;97435 97434 4 KVADLYELVQYAGNIIPR HYLEVYLTDEFAKGRKVADLYELVQYAGNI DLYELVQYAGNIIPRLYLLITVGVVYVKSF R K V P R L 2 1 1 1 0 1 1 1 0 2 2 1 0 0 1 0 0 0 2 2 0 0 18 1 2061.1259 Q96QK1 Q96QK1 90 107 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 3 0.025379 23.562 By MS/MS 1 1.7235 1.7184 NaN 1 Median NaN NaN NaN 0 0 Median 1.7235 1.7184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3823700 1334200 2489400 0 0 0 3823700 1334200 2489400 0 0 0 0 0 0 0 0 0 0 0 0 18400 3722 19179 95743 97436 97436 1 KVAEITGEIQQYQNQPYCLR LKRHGKELINFSKRRKVAEITGEIQQYQNQ TGEIQQYQNQPYCLRVESDIKRFFENLNPM R K V L R V 1 1 1 0 1 4 2 1 0 2 1 1 0 0 1 0 1 0 2 1 0 0 20 1 2437.206 G5E9C8;Q07889;Q07890 G5E9C8 963 982 SOS1;SOS2 Son of sevenless homolog 1;Son of sevenless homolog 2 yes no 4 0.07055 4.1063 By MS/MS 1 1.009 0.89315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.009 0.89315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9107800 4283500 4824300 0 0 0 0 0 0 0 0 0 9107800 4283500 4824300 0 0 0 0 0 0 18401 1129 19180 95744 97437 97437 1 KVAETAVQLFISGDK RFARLRMEKRHNYVRKVAETAVQLFISGDK KVAETAVQLFISGDKVNVAGLVLAGSADFK R K V D K V 2 0 0 1 0 1 1 1 0 1 1 2 0 1 0 1 1 0 0 2 0 0 15 1 1604.8774 B7Z7P8;P62495;I3L492 B7Z7P8 190 204 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 3 0.00012138 48.899 By MS/MS By matching By matching 1 1 1 1.0518 1.0775 20.01 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0518 1.1033 NaN 1 0 Median 1.1344 1.0775 NaN 1 0 Median 0.68299 0.7714 NaN 1 0 Median NaN NaN NaN 0 0 Median 8461600 4149200 4312400 0 0 0 0 0 0 5649200 2540200 3109000 145500 49110 96390 2666900 1559900 1107000 0 0 0 18402 638 19181 95745;95746;95747 97438;97439 97439 2 KVAHSDKPGSTSTASFR SEENRHLRDEGLRLRKVAHSDKPGSTSTAS AHSDKPGSTSTASFRDNVTSPLPSLLVVIA R K V F R D 2 1 0 1 0 0 0 1 1 0 0 2 0 1 1 4 2 0 0 1 0 0 17 2 1774.8962 Q9P0L0 Q9P0L0 205 221 VAPA Vesicle-associated membrane protein-associated protein A yes yes 4 0.065956 9.0964 By matching By matching By matching By MS/MS 2 1 2 1 0.89203 0.96615 12.367 6 Median 0.80679 0.85468 11.436 2 0 Median 0.96984 1.0118 NaN 1 0 Median 0.81445 0.91711 13.268 2 0 Median 1.1195 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1977800 975150 1002700 561620 308390 253240 223480 104400 119080 510130 251810 258320 682570 310550 372020 0 0 0 0 0 0 18403 4205 19182 95748;95749;95750;95751;95752;95753 97440 97440 1 KVAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K K V V K K 3 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 3 0 0 10 1 978.6226 P62424;Q5T8U3 P62424 11 20 RPL7A 60S ribosomal protein L7a yes no 2 0.014956 43.808 By matching By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 0.82324 0.80707 7.0029 6 Median 0.78759 0.76926 NaN 1 0 Median 0.85751 0.77248 NaN 1 0 Median 0.79034 0.83159 NaN 1 0 Median 0.92553 0.81268 NaN 1 0 Median 0.7709 0.8015 NaN 1 0 Median 1.0727 0.93098 NaN 1 0 Median 11819000 6380600 5437900 4320500 2376900 1943600 4067600 2148200 1919400 1214700 712450 502240 1732100 906000 826110 248770 132450 116320 234770 104590 130180 18404 2589 19183 95754;95755;95756;95757;95758;95759 97441 97441 1 KVAPQNDSFGTQLPPMHQQQR WEGMPSPFKDQPDAKKVAPQNDSFGTQLPP DSFGTQLPPMHQQQRSVMTEEYKVPDGMVG K K V Q R S 1 1 1 1 0 5 0 1 1 0 1 1 1 1 3 1 1 0 0 1 0 0 21 1 2406.1863 C9JSZ1 C9JSZ1 98 118 FUBP1 yes yes 3;4 2.3407E-12 76.704 By matching By MS/MS By MS/MS 1 2 2 0.72868 0.77574 15.257 5 Median 0.538 0.55133 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70879 0.75383 4.0523 2 0 Median 0.83946 0.7873 0.59795 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63413000 35715000 27698000 3073400 1420300 1653100 0 0 0 50049000 28641000 21408000 10290000 5653300 4636900 0 0 0 0 0 0 18405 723 19184 95760;95761;95762;95763;95764 97442;97443;97444;97445;97446;97447;97448;97449 97444 8 KVAPQNDSFGTQLPPMHQQQSR GQKRPLEDGDQPDAKKVAPQNDSFGTQLPP SFGTQLPPMHQQQSRSVMTEEYKVPDGMVG K K V S R S 1 1 1 1 0 5 0 1 1 0 1 1 1 1 3 2 1 0 0 1 0 0 22 1 2493.2183 Q96AE4;E9PEB5 Q96AE4 77 98 FUBP1 Far upstream element-binding protein 1 yes no 3;4 7.3381E-05 34.689 By MS/MS By MS/MS 1 2 0.88968 0.81575 11.781 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64544 0.6864 NaN 1 0 Median 0.90039 0.83747 3.7162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24306000 14422000 9883500 0 0 0 0 0 0 20109000 12202000 7907700 4196500 2220700 1975800 0 0 0 0 0 0 18406 3599 19185 95765;95766;95767 97450;97451;97452;97453 97452 4 KVASTLTEEGGGGGGGGGSVAPKPPR PPGSQALQVVPDLSKKVASTLTEEGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K K V P R G 2 1 0 0 0 0 2 9 0 0 1 2 0 0 3 2 2 0 0 2 0 0 26 2 2322.1928 Q8TF68;F5H8L7;E9PHB3;F5H105 Q8TF68 167 192 ZNF384 Zinc finger protein 384 yes no 4 0.026317 13.407 By MS/MS 1 0.88175 1.0843 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88175 1.0843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1734900 891340 843540 0 0 0 0 0 0 1734900 891340 843540 0 0 0 0 0 0 0 0 0 18407 3483 19186 95768 97454 97454 1 KVDAAELLR SHGVPLPNWLINSYKKVDAAELLRLYLNYD LINSYKKVDAAELLRLYLNYDLLEEAVDLV K K V L R L 2 1 0 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1013.5869 Q12769 Q12769 1331 1339 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.0010386 101.64 By matching By MS/MS By MS/MS 1 2 1 1.1607 1.2234 5.7816 4 Median NaN NaN NaN 0 0 Median 1.3818 1.2986 NaN 1 0 Median 1.0173 1.1647 1.8989 2 0 Median 1.3194 1.2679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25482000 12074000 13408000 0 0 0 4159600 1384800 2774700 17521000 9081500 8439800 3800700 1607400 2193300 0 0 0 0 0 0 18408 2756 19187 95769;95770;95771;95772 97455;97456;97457;97458 97456 4 KVDEAIALFQK EADEAKLQQTEAELRKVDEAIALFQKML__ AELRKVDEAIALFQKML_____________ R K V Q K M 2 0 0 1 0 1 1 0 0 1 1 2 0 1 0 0 0 0 0 1 0 0 11 1 1260.7078 P26640;A0A140T936 P26640 1252 1262 VARS Valine--tRNA ligase yes no 2;3 0.00022005 115.18 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 1.2253 1.4046 21.718 7 Median 0.92838 0.97527 9.4339 2 0 Median 1.7714 1.6745 NaN 1 0 Median 1.2364 1.4262 2.1579 2 0 Median 1.3565 1.2922 17.393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47659000 21694000 25965000 16802000 8362900 8439400 575750 241360 334380 20163000 8670600 11492000 10119000 4419500 5699000 0 0 0 0 0 0 18409 2148 19188 95773;95774;95775;95776;95777;95778;95779 97459;97460;97461;97462;97463;97464;97465;97466;97467;97468 97467 10 KVDGSVNAYAINVSQK MKLMGFASFDSTKGKKVDGSVNAYAINVSQ VDGSVNAYAINVSQKRKYRQYMNRKGGFNR K K V Q K R 2 0 2 1 0 1 0 1 0 1 0 2 0 0 0 2 0 0 1 3 0 0 16 1 1691.8842 Q8WVK2 Q8WVK2 119 134 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 2;3 4.0023E-08 145.6 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.82756 0.8556 30.049 7 Median 0.57452 0.56321 48.415 2 0 Median NaN NaN NaN 0 0 Median 0.84302 0.83908 2.7582 2 0 Median 1.0365 0.93309 7.3272 2 0 Median 0.82756 0.87931 NaN 1 0 Median NaN NaN NaN 0 0 Median 54174000 30365000 23809000 16317000 10909000 5408400 0 0 0 29019000 15126000 13893000 5573700 2550900 3022700 3263500 1778800 1484700 0 0 0 18410 3502 19189 95780;95781;95782;95783;95784;95785;95786 97469;97470;97471;97472;97473;97474;97475 97471 7 KVDGSVNAYAINVSQKR MKLMGFASFDSTKGKKVDGSVNAYAINVSQ DGSVNAYAINVSQKRKYRQYMNRKGGFNRP K K V K R K 2 1 2 1 0 1 0 1 0 1 0 2 0 0 0 2 0 0 1 3 0 0 17 2 1847.9854 Q8WVK2 Q8WVK2 119 135 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 3 6.9702E-06 64.454 By MS/MS By matching 1 1 1.0404 1.0267 16.151 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1104 0.91593 NaN 1 0 Median 0.97488 1.151 NaN 1 0 Median NaN NaN NaN 0 0 Median 6711100 3631900 3079100 0 0 0 0 0 0 0 0 0 2607300 1106900 1500400 4103800 2525000 1578700 0 0 0 18411 3502 19190 95787;95788 97476 97476 1 KVDIIADAAYSIFQKPK AMDMLGGPGIESQCRKVDIIADAAYSIFQK DIIADAAYSIFQKPKSFTGNFVIDENILKE R K V P K S 3 0 0 2 0 1 0 0 0 3 0 3 0 1 1 1 0 0 1 1 0 0 17 2 1906.0564 Q6YN16 Q6YN16 220 236 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 3 7.0754E-06 65.716 By matching By MS/MS By matching 2 2 1 1.0146 1.0271 25.791 5 Median 0.79025 0.78922 31.603 2 0 Median 1.2014 1.1055 10.407 2 0 Median 1.0008 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16988000 8263000 8725000 4670000 2511900 2158100 10520000 4938000 5582400 1797500 813110 984410 0 0 0 0 0 0 0 0 0 18412 3195 19191 95789;95790;95791;95792;95793 97477 97477 1 KVDPMAIVVFHQADIGEYVR PLGFGVAAKSTQDCRKVDPMAIVVFHQADI AIVVFHQADIGEYVRHEETLT_________ R K V V R H 2 1 0 2 0 1 1 1 1 2 0 1 1 1 1 0 0 0 1 4 0 0 20 1 2286.1831 Q9Y221 Q9Y221 155 174 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 3;4 6.7703E-09 62.966 By MS/MS By matching 4 1 0.88995 0.97816 6.5027 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87852 0.9905 5.0893 4 1 Median 1.1192 0.89557 NaN 1 0 Median 24363000 12543000 11820000 0 0 0 0 0 0 0 0 0 0 0 0 24194000 12479000 11716000 168420 64577 103840 18413 4365 19192;19193 95794;95795;95796;95797;95798 97478;97479;97480;97481;97482;97483 97481 1944 6 KVDSSVLGSLSSVPLTGFSFSPGNSSLFGK PSSLGATSASFNFGKKVDSSVLGSLSSVPL TGFSFSPGNSSLFGKDTTQSKPVSSPFPTK K K V G K D 0 0 1 1 0 0 0 4 0 0 4 2 0 3 2 9 1 0 0 3 0 0 30 1 3000.5444 Q9UKX7 Q9UKX7 276 305 NUP50 Nuclear pore complex protein Nup50 yes yes 3 4.5929E-09 39.036 By MS/MS By matching 2 1 0.65321 0.6808 19.289 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64622 0.6772 0.74915 2 0 Median 0.94612 0.94571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21849000 12883000 8966400 0 0 0 0 0 0 21395000 12655000 8740300 453540 227470 226070 0 0 0 0 0 0 18414 4317 19194 95799;95800;95801 97484 97484 1 KVDVEEEFFALR DTPTSSKPQSKRSLRKVDVEEEFFALRKRT SLRKVDVEEEFFALRKRTPSAGKAMHTPKP R K V L R K 1 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 12 1 1480.7562 P46013 P46013 1517 1528 MKI67 Antigen KI-67 yes yes 2;3 0.00095298 62.303 By MS/MS 3 1.072 1.2521 6.675 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.072 1.2521 6.675 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10499000 4985000 5513600 0 0 0 0 0 0 10499000 4985000 5513600 0 0 0 0 0 0 0 0 0 18415 2335 19195 95802;95803;95804 97485;97486;97487;97488;97489;97490 97490 6 KVDWLTEK TLTITQAVIFINTRRKVDWLTEKMHARDFT IFINTRRKVDWLTEKMHARDFTVSAMHGDM R K V E K M 0 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 8 1 1017.5495 P38919;I3L3H2;P60842;J3KT12;J3QS69;J3KSZ0;J3QL43;J3KTN0;J3QL52;Q14240;E7EQG2 P60842 284 291 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 6.1711E-30 210.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 4 1.1603 1.0493 13.423 16 Median 1.111 1.0402 7.6144 2 0 Median 1.0354 0.92647 5.3491 3 0 Median 1.0526 1.1177 8.3054 2 0 Median 1.1186 1.0287 17.266 2 0 Median 1.2426 1.3237 1.769 3 0 Median 1.1994 1.0418 3.6697 4 0 Median 502370000 232500000 269860000 77878000 35749000 42129000 109180000 52256000 56924000 81153000 38422000 42731000 123780000 55883000 67900000 56707000 26261000 30446000 53664000 23930000 29735000 18416 2278;2529;2867 19196 95805;95806;95807;95808;95809;95810;95811;95812;95813;95814;95815;95816;95817;95818;95819;95820 97491;97492;97493;97494;97495;97496;97497;97498;97499;97500;97501;97502;97503;97504;97505;97506;97507;97508;97509;97510 97505 20 KVEAPFIPK HKWFATTDWIAIYQRKVEAPFIPKFKGPGD IAIYQRKVEAPFIPKFKGPGDTSNFDDYEE R K V P K F 1 0 0 0 0 0 1 0 0 1 0 2 0 1 2 0 0 0 0 1 0 0 9 1 1027.6066 A0A087WVC4;A0A0A0MS54;P22694;P22612;P17612 P17612 310 318 PRKACB;PRKACG;PRKACA cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma;cAMP-dependent protein kinase catalytic subunit alpha no no 2 0.017532 46.457 By MS/MS By matching By matching 1 1 1 0.76413 0.68042 14.961 3 Median 0.72226 0.67155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76413 0.68042 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0332 0.87571 NaN 1 0 Median 22863000 10821000 12042000 10762000 6099600 4662300 0 0 0 0 0 0 3321200 1894200 1427000 0 0 0 8779500 2826900 5952500 18417 2044;40 19197 95821;95822;95823 97511 97511 1 KVEAQLQELQVK KVLLQGKGDSEHKRKKVEAQLQELQVKFNE KRKKVEAQLQELQVKFNEGERVRTELADKV K K V V K F 1 0 0 0 0 3 2 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 12 1 1411.8035 P35579 P35579 1249 1260 MYH9 Myosin-9 yes yes 2;3 1.5403E-52 231.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 4 1.1401 1.1182 14.635 14 Median 1.3256 1.2591 3.4153 2 0 Median 1.096 1.0444 3.7963 3 2 Median 1.0525 1.2156 9.2408 2 0 Median 1.1513 1.0753 NaN 1 0 Median 1.2993 1.3929 12.926 2 0 Median 1.1717 1.0456 15.139 4 0 Median 148650000 66304000 82343000 43288000 18714000 24574000 73311000 34255000 39056000 11982000 4715000 7267200 999730 434160 565570 9783500 4319200 5464300 9282300 3865500 5416800 18418 2244 19198 95824;95825;95826;95827;95828;95829;95830;95831;95832;95833;95834;95835;95836;95837 97512;97513;97514;97515;97516;97517;97518;97519;97520;97521;97522;97523;97524;97525;97526;97527;97528 97521 17 KVEDLFLTFAK AARKKKLLEAQSHFRKVEDLFLTFAKKASA SHFRKVEDLFLTFAKKASAFNSWFENAEED R K V A K K 1 0 0 1 0 0 1 0 0 0 2 2 0 2 0 0 1 0 0 1 0 0 11 1 1309.7282 A0A0D9SF54;Q13813 Q13813 2088 2098 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.00021273 94.767 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 2 7 5 3 1 1.0648 1.0889 21.097 22 Median 1.145 1.1952 21.214 4 2 Median 1.1835 1.1419 14.09 2 0 Median 1.0154 1.1721 31.855 7 0 Median 1.0862 1.1035 7.2958 5 0 Median 0.96078 1.0745 4.7138 3 0 Median 0.93117 0.82991 NaN 1 0 Median 96633000 48286000 48347000 22809000 10549000 12260000 3012800 1228800 1784000 63164000 32673000 30492000 3246900 1551600 1695300 4014000 2085200 1928800 386330 198550 187770 18419 264;2838 19199 95838;95839;95840;95841;95842;95843;95844;95845;95846;95847;95848;95849;95850;95851;95852;95853;95854;95855;95856;95857;95858;95859 97529;97530;97531;97532;97533;97534;97535 97531 7 KVEDLQFR REKVELLNQLEEEKRKVEDLQFRVEEESIT QLEEEKRKVEDLQFRVEEESITKGDLEVAT R K V F R V 0 1 0 1 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 1 1033.5556 J3KP58;P30622;F5H0N7;F5H6A0 J3KP58 437 444 CLIP1 CAP-Gly domain-containing linker protein 1 no no 2 0.011185 65.252 By MS/MS 1 0.88328 0.84038 NaN 1 Median NaN NaN NaN 0 0 Median 0.88328 0.84038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2533000 1129400 1403600 0 0 0 2533000 1129400 1403600 0 0 0 0 0 0 0 0 0 0 0 0 18420 1308 19200 95860 97536 97536 1 KVEDMMK AAKGEGQLGPAERAKKVEDMMKKLWGDRYF LGPAERAKKVEDMMKKLWGDRYFDPANGKF K K V M K K 0 0 0 1 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 1 0 0 7 1 879.41941 P13639 P13639 252 258 EEF2 Elongation factor 2 yes yes 2 0.0013165 134.81 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.0546 1.1484 16.564 7 Median 1.1296 1.1921 5.2758 2 0 Median 0.96579 0.92021 0.66239 2 0 Median 1.19 1.3594 NaN 1 0 Median 0.92866 0.9072 NaN 1 0 Median 1.0546 1.1794 NaN 1 0 Median NaN NaN NaN 0 0 Median 33016000 16472000 16545000 1901900 837570 1064400 29333000 14780000 14553000 845450 392710 452740 711810 363210 348600 223710 97591 126120 0 0 0 18421 1992 19201 95861;95862;95863;95864;95865;95866;95867 97537;97538;97539;97540;97541;97542 97540 6 KVEEAEPEEFVVEK TTLQKMGKKQNGKSKKVEEAEPEEFVVEKV KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K K V E K V 1 0 0 0 0 0 6 0 0 0 0 2 0 1 1 0 0 0 0 3 0 0 14 1 1660.8196 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 21 34 CBX3 Chromobox protein homolog 3 yes no 2;3 1.8657E-07 164.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 2 5 5 0.85678 0.80612 14.742 20 Median 0.98037 0.99577 19.613 2 0 Median 1.0319 0.94153 25.78 2 0 Median 0.79449 0.7993 13.441 4 1 Median 0.8645 0.77844 4.0853 2 0 Median 0.75857 0.81102 16.524 5 0 Median 0.92182 0.80004 6.2852 5 0 Median 375020000 195150000 179870000 40531000 19389000 21142000 26624000 12781000 13842000 31920000 17398000 14522000 7029000 3624100 3404900 148750000 82045000 66706000 120170000 59908000 60257000 18422 2795 19202 95868;95869;95870;95871;95872;95873;95874;95875;95876;95877;95878;95879;95880;95881;95882;95883;95884;95885;95886;95887;95888 97543;97544;97545;97546;97547;97548;97549;97550;97551;97552;97553;97554;97555;97556;97557;97558;97559;97560;97561;97562;97563;97564;97565;97566;97567;97568;97569;97570;97571;97572;97573 97547 31 KVEEEEDESALK SEYCRISNLIVLHLRKVEEEEDESALKRSE HLRKVEEEEDESALKRSELVNWYLKEIESE R K V L K R 1 0 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1404.662 Q14566 Q14566 733 744 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 0.00097353 85.377 By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 0.86348 0.90921 23.922 9 Median 0.86348 0.90921 13.675 3 0 Median 0.9893 0.9565 31.858 2 1 Median 0.65802 0.75301 7.2956 2 0 Median 1.2149 1.1869 32.519 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14420000 7545500 6874500 6697300 3523700 3173500 2970300 1452800 1517500 3859300 2157800 1701500 893140 411140 482000 0 0 0 0 0 0 18423 2881 19203 95889;95890;95891;95892;95893;95894;95895;95896;95897 97574;97575;97576;97577;97578;97579;97580 97580 7 KVEEEEDESALKR SEYCRISNLIVLHLRKVEEEEDESALKRSE LRKVEEEEDESALKRSELVNWYLKEIESEI R K V K R S 1 1 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 13 2 1560.7631 Q14566 Q14566 733 745 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 4.1761E-07 148.48 By MS/MS By MS/MS By MS/MS By MS/MS 7 4 3 2 0.9178 1.007 16.311 16 Median 0.89152 1.0133 20.176 7 0 Median 1.0222 1.0467 3.5044 4 0 Median 0.80326 1.0007 21.214 3 0 Median NaN NaN NaN 0 0 Median 0.79289 0.93436 7.4413 2 0 Median NaN NaN NaN 0 0 Median 69223000 35787000 33437000 31958000 16546000 15412000 13417000 6592100 6825400 21407000 11312000 10095000 0 0 0 2440800 1336300 1104400 0 0 0 18424 2881 19204 95898;95899;95900;95901;95902;95903;95904;95905;95906;95907;95908;95909;95910;95911;95912;95913 97581;97582;97583;97584;97585;97586;97587;97588;97589;97590;97591;97592;97593;97594;97595;97596 97583 16 KVEELQACVETAR TSVTQAQREKAELSRKVEELQACVETARQE SRKVEELQACVETARQEQHEAQAQVAELEL R K V A R Q 2 1 0 0 1 1 3 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 1 1531.7664 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 651 663 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 1.3974E-05 86.756 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 0.94846 0.91563 10.022 5 Median NaN NaN NaN 0 0 Median 1.1011 1.0401 NaN 1 0 Median 0.75437 0.90458 NaN 1 0 Median 0.94846 0.91563 NaN 1 0 Median 0.75234 0.85023 NaN 1 0 Median 1.2135 1.078 NaN 1 0 Median 20116000 10565000 9551300 0 0 0 5480100 2884200 2595900 6308900 3670500 2638400 1617300 743170 874170 3871500 2100300 1771200 2838600 1167000 1671600 18425 2905;77 19205 95914;95915;95916;95917;95918 97597;97598;97599;97600 97599 4 KVEEVVYDLSIR DSLRKRYDGLKYDVKKVEEVVYDLSIRGFN DVKKVEEVVYDLSIRGFNKETAAACVEK__ K K V I R G 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 1 0 0 1 3 0 0 12 1 1448.7875 E9PGT1;Q15631 E9PGT1 199 210 TSN Translin yes no 2;3 0.00046657 51.927 By MS/MS By MS/MS 1 2 1.342 1.2451 9.0807 3 Median 1.0324 1.0735 NaN 1 0 Median 1.3543 1.2555 1.1826 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57853000 25646000 32207000 45422000 21195000 24226000 12432000 4450700 7980900 0 0 0 0 0 0 0 0 0 0 0 0 18426 925 19206 95919;95920;95921 97601;97602;97603 97601 3 KVEGDIWALQK YKDITHGNRQMTVIRKVEGDIWALQKDVED TVIRKVEGDIWALQKDVEDFLSPLLGKTPV R K V Q K D 1 0 0 1 0 1 1 1 0 1 1 2 0 0 0 0 0 1 0 1 0 0 11 1 1285.703 Q13405;H0YDP7 Q13405 112 122 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2;3 0.00037616 73.233 By MS/MS By matching By MS/MS 2 2 1 1.1806 1.1994 22.137 5 Median 0.90252 0.90325 7.9768 2 0 Median 1.5692 1.3874 4.0774 2 0 Median 1.1806 1.1994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21984000 9631800 12352000 13203000 6186800 7015700 2388200 894960 1493200 6393300 2550000 3843300 0 0 0 0 0 0 0 0 0 18427 2810 19207 95922;95923;95924;95925;95926 97604;97605;97606;97607;97608 97605 5 KVEGDMYESANSRDEYYHLLAEK ALKDRRMENLVAYAKKVEGDMYESANSRDE SANSRDEYYHLLAEKIYKIQKELEEKRRSR K K V E K I 2 1 1 2 0 0 4 1 1 0 2 2 1 0 0 2 0 0 3 1 0 0 23 2 2746.2545 Q92793;I3L466;I3L0Q1 Q92793 635 657 CREBBP CREB-binding protein yes no 4 0.016763 15.26 By MS/MS 1 1.025 1.3542 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.025 1.3542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17857000 8559900 9297300 0 0 0 0 0 0 17857000 8559900 9297300 0 0 0 0 0 0 0 0 0 18428 3557 19208 95927 97609 97609 1 KVEHEISEGNVATAAAAALASAATK LTDTCKERESDTGKKKVEHEISEGNVATAA VATAAAAALASAATKAKHLAAVEERKIKSL K K V T K A 9 0 1 0 0 0 3 1 1 1 1 2 0 0 0 2 2 0 0 2 0 0 25 1 2409.25 Q92922 Q92922 856 880 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 4 0.0080204 18.904 By MS/MS By matching By matching 1 1 1 1.0229 1.1734 61.79 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0229 1.1734 NaN 1 0 Median 1.0371 0.98787 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41859 0.37307 NaN 1 0 Median 5499700 2754700 2745000 0 0 0 0 0 0 4739300 2433200 2306100 384850 148130 236710 0 0 0 375580 173300 202280 18429 3567 19209 95928;95929;95930 97610;97611 97610 2 KVEIIIGR YWCHVYNDRDSQDSKKVEIIIGRTDEAVEC RDSQDSKKVEIIIGRTDEAVECTEDELNNL K K V G R T 0 1 0 0 0 0 1 1 0 3 0 1 0 0 0 0 0 0 0 1 0 0 8 1 926.5913 A0A3B3IS32;Q9UDY8 A0A3B3IS32 303 310 MALT1 Mucosa-associated lymphoid tissue lymphoma translocation protein 1 yes no 2 0.015998 57.281 By MS/MS 1 1.2804 1.2815 NaN 1 Median NaN NaN NaN 0 0 Median 1.2804 1.2815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1772500 808320 964210 0 0 0 1772500 808320 964210 0 0 0 0 0 0 0 0 0 0 0 0 18430 419 19210 95931 97612;97613 97613 2 KVEITTETIK DPKNVLITDFFGSVRKVEITTETIKLQQDS FGSVRKVEITTETIKLQQDSEIMESSYKED R K V I K L 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 3 0 0 1 0 0 10 1 1160.6653 Q92643;A6NEM5;B1AK81 Q92643 309 318 PIGK GPI-anchor transamidase yes no 2 0.0062599 53.327 By matching By MS/MS By matching 1 1 1 1.1586 1.0837 11.809 3 Median 1.1586 1.0837 NaN 1 0 Median 1.4454 1.3089 NaN 1 0 Median 0.96654 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7982500 3735300 4247200 3049200 1650700 1398500 2625800 1089100 1536700 2307500 995430 1312000 0 0 0 0 0 0 0 0 0 18431 510 19211 95932;95933;95934 97614 97614 1 KVELSESEEDKGGK GTEKRESPSPAPKPRKVELSESEEDKGGKM RKVELSESEEDKGGKMAAADSVQQRRQYRR R K V G K M 0 0 0 1 0 0 4 2 0 0 1 3 0 0 0 2 0 0 0 1 0 0 14 2 1533.7522 M0R088;E9PCT1;A9Z1X7;Q8IYB3 M0R088 418 431 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 3 0.0019468 37.013 By matching By MS/MS By matching By matching 2 1 2 1 1.0347 1.1353 13.764 6 Median 0.97485 1.0444 7.1264 2 0 Median 1.2356 1.1735 NaN 1 0 Median 0.91546 1.079 18.962 2 0 Median NaN NaN NaN 0 0 Median 1.2243 1.3649 NaN 1 0 Median NaN NaN NaN 0 0 Median 6685000 3065000 3620000 1598800 797300 801510 3909900 1719900 2190000 748150 351120 397020 0 0 0 428160 196660 231500 0 0 0 18432 553 19212 95935;95936;95937;95938;95939;95940 97615 97615 1 KVENEDMNKDQILLEK HYENFRSERLKRGGRKVENEDMNKDQILLE VENEDMNKDQILLEKEAELRRMQEMIARMQ R K V E K E 0 0 2 2 0 1 3 0 0 1 2 3 1 0 0 0 0 0 0 1 0 0 16 2 1944.9826 Q15019;B5MCX3 Q15019 310 325 SEPT2 Septin-2 yes no 2;3;4 1.3511E-10 158.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 6 6 1 4 0.9916 1.0037 17.425 20 Median 0.79978 0.8201 9.6083 2 0 Median 1.0654 1.0551 NaN 1 0 Median 0.90874 1.0037 13.969 6 0 Median 1.1616 1.0934 16.204 6 0 Median 0.674 0.73419 NaN 1 0 Median 1.045 0.93183 22.778 4 0 Median 1444000000 686080000 757910000 13847000 7049000 6798000 9666200 4443100 5223100 1039400000 507450000 531940000 365450000 160130000 205320000 3272900 1757800 1515200 12365000 5246900 7118500 18433 2914 19213;19214 95941;95942;95943;95944;95945;95946;95947;95948;95949;95950;95951;95952;95953;95954;95955;95956;95957;95958;95959;95960 97616;97617;97618;97619;97620;97621;97622;97623;97624;97625;97626;97627;97628;97629;97630;97631;97632;97633;97634;97635;97636 97634 1594 21 KVEQLQQEYTEMK DVRNRQQDVRMTANRKVEQLQQEYTEMKAL NRKVEQLQQEYTEMKALLDASETTSTRKIK R K V M K A 0 0 0 0 0 3 3 0 0 0 1 2 1 0 0 0 1 0 1 1 0 0 13 1 1652.808 Q14258;A0A3B3IUA7 Q14258 237 249 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2;3 3.0732E-31 214.81 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 2 1.0013 1.0684 18.831 14 Median 0.93141 0.87398 20.514 5 0 Median 1.2185 1.1529 10.779 4 1 Median 0.86165 0.97939 6.7667 3 0 Median 1.3379 1.2353 13.864 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128260000 62710000 65555000 56301000 28562000 27739000 45648000 21609000 24039000 19393000 9501900 9891000 6923200 3036700 3886600 0 0 0 0 0 0 18434 2870 19215 95961;95962;95963;95964;95965;95966;95967;95968;95969;95970;95971;95972;95973;95974 97637;97638;97639;97640;97641;97642;97643;97644;97645;97646;97647;97648;97649;97650;97651 97644 15 KVEQTIQYNSELEQK KKCEREERLILELGKKVEQTIQYNSELEQK KVEQTIQYNSELEQKVNELTGGLEETLKEK K K V Q K V 0 0 1 0 0 3 3 0 0 1 1 2 0 0 0 1 1 0 1 1 0 0 15 1 1835.9265 Q8IWJ2;B8ZZW2 Q8IWJ2 630 644 GCC2 GRIP and coiled-coil domain-containing protein 2 yes no 3 8.7415E-05 59.673 By MS/MS By matching 1 1 0.98148 0.99533 8.8439 2 Median NaN NaN NaN 0 0 Median 1.0919 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88221 0.93499 NaN 1 0 Median NaN NaN NaN 0 0 Median 4189400 2246300 1943000 0 0 0 1949600 890780 1058800 0 0 0 0 0 0 2239800 1355600 884200 0 0 0 18435 3326 19216 95975;95976 97652 97652 1 KVESLLNEMK NENLRLLHVIEDRDRKVESLLNEMKELDSK EDRDRKVESLLNEMKELDSKLHLQEVQLMT R K V M K E 0 0 1 0 0 0 2 0 0 0 2 2 1 0 0 1 0 0 0 1 0 0 10 1 1189.6377 P49454 P49454 1796 1805 CENPF Centromere protein F yes yes 2 0.0064417 61.65 By MS/MS 1 1.5075 1.7131 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5075 1.7131 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3473000 1159000 2314100 0 0 0 0 0 0 3473000 1159000 2314100 0 0 0 0 0 0 0 0 0 18436 2383 19217 95977 97653 97653 1 KVESLQEEIAFLK QDVDNASLARLDLERKVESLQEEIAFLKKL ERKVESLQEEIAFLKKLHEEEIQELQAQIQ R K V L K K 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 P08670;B0YJC4;B0YJC5 P08670 223 235 VIM Vimentin yes no 2;3 3.6399E-06 143.42 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 6 3 9 6 1.128 1.1263 19.567 28 Median 1.0046 0.95402 6.8116 3 0 Median 1.7146 1.546 NaN 1 0 Median 1.0833 1.1263 8.5591 6 0 Median 1.3688 1.2966 11.252 3 0 Plateau 1.1461 1.2399 7.7886 9 0 Median 1.0414 0.90503 22.499 6 0 Median 397320000 180000000 217320000 53544000 24076000 29468000 9088500 3403500 5685100 153830000 71568000 82266000 64544000 28014000 36530000 103400000 46513000 56890000 12907000 6425000 6481800 18437 1907 19218 95978;95979;95980;95981;95982;95983;95984;95985;95986;95987;95988;95989;95990;95991;95992;95993;95994;95995;95996;95997;95998;95999;96000;96001;96002;96003;96004;96005 97654;97655;97656;97657;97658;97659;97660;97661;97662;97663;97664;97665;97666;97667;97668;97669;97670;97671;97672;97673;97674;97675;97676;97677;97678 97671 25 KVESLQEEIAFLKK QDVDNASLARLDLERKVESLQEEIAFLKKL RKVESLQEEIAFLKKLHEEEIQELQAQIQE R K V K K L 1 0 0 0 0 1 3 0 0 1 2 3 0 1 0 1 0 0 0 1 0 0 14 2 1660.94 P08670;B0YJC4;B0YJC5 P08670 223 236 VIM Vimentin yes no 2;3 1.9154E-05 84.753 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 4 3 5 1.0958 1.1582 22.534 17 Median 1.0872 1.0858 4.6498 2 0 Median 1.6318 1.5447 NaN 1 0 Median 1.1293 1.3295 33.645 2 1 Median 1.148 1.1498 11.366 4 0 Median 1.3747 1.5009 11.775 3 0 Plateau 0.99217 0.97182 32.537 5 0 Median 391970000 174840000 217130000 136930000 62675000 74256000 5747400 2279100 3468200 36607000 16007000 20600000 6519300 3317900 3201400 166290000 70769000 95520000 39882000 19796000 20086000 18438 1907 19219 96006;96007;96008;96009;96010;96011;96012;96013;96014;96015;96016;96017;96018;96019;96020;96021;96022 97679;97680;97681;97682;97683;97684;97685;97686;97687;97688 97685 9 KVESLWPIFR QKMREAETEPHEGKRKVESLWPIFRIHHQK HEGKRKVESLWPIFRIHHQKTRYIFDLFYK R K V F R I 0 1 0 0 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 1 0 0 10 1 1273.7183 P41223 P41223 42 51 BUD31 Protein BUD31 homolog yes yes 2;3 0.015628 41.029 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 2 1.1133 1.0668 10.109 8 Median 1.1042 1.097 4.8173 2 0 Median 1.141 1.0057 NaN 1 0 Median 1.11 1.157 10.611 2 0 Median 1.1681 1.034 NaN 1 0 Median 0.9415 1.0584 20.05 2 0 Median NaN NaN NaN 0 0 Median 16534000 7936000 8598400 4804400 2418200 2386200 326400 148220 178180 7494400 3541300 3953100 409650 193550 216100 3499500 1634700 1864800 0 0 0 18439 2297 19220 96023;96024;96025;96026;96027;96028;96029;96030 97689;97690;97691;97692 97692 4 KVESTGAVPEFKEEK QPDFFLDEYPEAVSKKVESTGAVPEFKEEK KVESTGAVPEFKEEKLQLQPKPRSGAVEET K K V E K L 1 0 0 0 0 0 4 1 0 0 0 3 0 1 1 1 1 0 0 2 0 0 15 2 1676.8621 Q6YN16 Q6YN16 284 298 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 3 0.00043165 40.801 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.97907 0.99828 10.956 6 Median 0.89382 0.89266 6.5932 2 0 Median 1.031 0.99828 7.9427 2 0 Median 0.92988 1.0907 NaN 1 0 Median 1.181 1.1352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18446000 8703200 9742700 6660500 3307300 3353300 4283200 1958200 2325000 2788900 1283200 1505700 4713300 2154600 2558700 0 0 0 0 0 0 18440 3195 19221 96031;96032;96033;96034;96035;96036 97693;97694;97695;97696;97697 97695 5 KVETDHIVAAVGLEPNVELAK GVSSGKLLIKLKDGRKVETDHIVAAVGLEP IVAAVGLEPNVELAKTGGLEIDSDFGGFRV R K V A K T 3 0 1 1 0 0 3 1 1 1 2 2 0 0 1 0 1 0 0 4 0 0 21 1 2231.2161 O95831;E9PMA0 O95831 388 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 1.1893E-12 81.574 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.98184 0.91996 34.14 4 Median 0.82158 0.76879 NaN 1 0 Median 1.1734 1.1009 NaN 1 0 Median 0.70968 0.7437 NaN 1 0 Median 1.6629 1.5355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24044000 12124000 11920000 17134000 8539100 8595400 1933700 872430 1061300 4048500 2416200 1632300 927080 295770 631310 0 0 0 0 0 0 18441 1797 19222 96037;96038;96039;96040 97698;97699;97700 97699 3 KVFASLPQVER ______________________________ YEIKKVFASLPQVERGVSKIIGGDPKGNNF K K V E R G 1 1 0 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 11 1 1272.719 O75083 O75083 7 17 WDR1 WD repeat-containing protein 1 yes yes 3 0.017303 39.266 By MS/MS 1 0.40331 0.40483 NaN 1 Median 0.40331 0.40483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7809300 5515700 2293500 7809300 5515700 2293500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18442 1643 19223 96041 97701 97701 1 KVFDPVPVGVTK QILPLHSQIPREEQRKVFDPVPVGVTKVIL EQRKVFDPVPVGVTKVILSTNIAETSITIN R K V T K V 0 0 0 1 0 0 0 1 0 0 0 2 0 1 2 0 1 0 0 4 0 0 12 1 1284.7442 Q08211 Q08211 697 708 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0.0001502 89.805 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 5 3 0.90027 0.99002 14.923 16 Median 0.94906 0.98601 20.416 2 0 Median 1.0489 0.97473 NaN 1 0 Median 0.85364 1.0056 5.2827 3 0 Median 1.1949 1.1382 16.062 2 1 Median 0.83778 0.92648 9.8878 5 0 Median 1.1508 1.0337 27.902 3 0 Median 203670000 106720000 96949000 7993700 4094200 3899500 6940500 3034000 3906500 88821000 45857000 42965000 5744200 2614600 3129500 82914000 45570000 37344000 11252000 5547300 5704500 18443 2736 19224 96042;96043;96044;96045;96046;96047;96048;96049;96050;96051;96052;96053;96054;96055;96056;96057 97702;97703;97704;97705;97706;97707;97708;97709;97710;97711;97712;97713;97714;97715;97716;97717;97718;97719;97720;97721;97722;97723 97706 22 KVFIEDVSR DFEEARKKALKLGAKKVFIEDVSREFVEEF LKLGAKKVFIEDVSREFVEEFIWPAIQSSA K K V S R E 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 2 0 0 9 1 1091.5975 P00966;Q5T6L5;Q5T6L6 P00966 58 66 ASS1 Argininosuccinate synthase yes no 2 0.028977 47.603 By MS/MS 1 0.36601 0.36439 NaN 1 Median 0.36601 0.36439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19863000 14887000 4975400 19863000 14887000 4975400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18444 1828 19225 96058 97724 97724 1 KVGLIAAR IGKPSTIRRDAPAGRKVGLIAARRTGRLRG RDAPAGRKVGLIAARRTGRLRGTKTVQEKE R K V A R R 2 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 826.53887 P62917;E9PKU4;E9PP36 P62917 234 241 RPL8 60S ribosomal protein L8 yes no 2 0.0042051 103.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 4 6 4 1.1027 1.0708 15.194 26 Median 1.0393 1.0498 7.4745 4 0 Median 1.0047 0.88605 6.1146 5 0 Median 1.0759 1.1188 21.207 3 0 Median 1.1869 1.109 11.35 4 0 Median 1.111 1.2107 8.54 6 0 Median 1.1143 0.96142 3.4385 4 0 Median 130230000 61122000 69105000 66796000 30877000 35919000 24035000 12074000 11961000 11548000 5423400 6124200 12584000 5765400 6818700 7057300 3109200 3948100 8206800 3873700 4333200 18445 2610 19226 96059;96060;96061;96062;96063;96064;96065;96066;96067;96068;96069;96070;96071;96072;96073;96074;96075;96076;96077;96078;96079;96080;96081;96082;96083;96084 97725;97726;97727;97728;97729;97730;97731 97726 7 KVGTFFSEVKPAGPTVEQQGEMAR PKVSGHVITDIVEGKKVGTFFSEVKPAGPT KPAGPTVEQQGEMARSGGRMLATLEPEQRA K K V A R S 2 1 0 0 0 2 3 3 0 0 0 2 1 2 2 1 2 0 0 3 0 0 24 2 2592.3006 P54886 P54886 348 371 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3;4 5.7219E-20 89.511 By MS/MS By MS/MS By matching By matching By matching 2 5 2 1 1 0.7629 0.89282 11.641 11 Median 0.71006 0.78207 18.681 2 0 Median NaN NaN NaN 0 0 Median 0.76182 0.94127 12.423 5 3 Median 0.8462 0.90447 7.9037 2 0 Median 0.75764 0.89282 NaN 1 0 Median 0.91852 0.94236 NaN 1 0 Median 135540000 76076000 59465000 40319000 24544000 15776000 0 0 0 90002000 48604000 41398000 1759400 906270 853150 2707000 1715600 991330 753010 306740 446270 18446 2488 19227 96085;96086;96087;96088;96089;96090;96091;96092;96093;96094;96095 97732;97733;97734;97735;97736;97737;97738;97739;97740;97741 97735 10 KVGTLWR LLEILGLLCKSMGPKKVGTLWREAGLSWKE LCKSMGPKKVGTLWREAGLSWKEFLPEGQD K K V W R E 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 1 858.50757 E7EX73;E9PGM1;E7EUU4;Q04637;H7C0V6 E7EX73 1228 1234 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.022122 71.141 By MS/MS 1 1.0624 1.0027 NaN 1 Median NaN NaN NaN 0 0 Median 1.0624 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5993800 2711700 3282100 0 0 0 5993800 2711700 3282100 0 0 0 0 0 0 0 0 0 0 0 0 18447 894 19228 96096 97742 97742 1 KVGYTPDWIFLLR FAETGQVQKIVLYAKKVGYTPDWIFLLRNV AKKVGYTPDWIFLLRNVMRISPDQGQQFAQ K K V L R N 0 1 0 1 0 0 0 1 0 1 2 1 0 1 1 0 1 1 1 1 0 0 13 1 1606.8871 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 511 523 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 0.00079565 64.439 By MS/MS By MS/MS By MS/MS 7 3 3 1.1452 1.1711 24.056 13 Median 1.1452 1.1805 15.606 7 0 Median 1.2503 1.174 36.69 3 0 Median 0.88105 1.0517 16.157 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78322000 35275000 43047000 55349000 25177000 30171000 17971000 7538600 10433000 5002100 2559000 2443100 0 0 0 0 0 0 0 0 0 18448 44 19229 96097;96098;96099;96100;96101;96102;96103;96104;96105;96106;96107;96108;96109 97743;97744;97745;97746;97747;97748;97749;97750;97751;97752;97753;97754;97755 97746 13 KVHVIFNYK YNIMFGPDICGPGTKKVHVIFNYKGKNVLI CGPGTKKVHVIFNYKGKNVLINKDIRCKDD K K V Y K G 0 0 1 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 1 2 0 0 9 1 1146.655 P27797;K7EJB9 P27797 143 151 CALR Calreticulin yes no 2 0.00057965 132.08 By MS/MS By MS/MS By MS/MS 2 1 1 1.2054 1.1791 19.637 4 Median 0.9955 0.96239 16.626 2 0 Median 1.3928 1.3048 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.285 1.2844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24822000 11446000 13376000 12904000 6256900 6647200 9984300 4335300 5649000 0 0 0 1933800 854020 1079700 0 0 0 0 0 0 18449 2157 19230 96110;96111;96112;96113 97756;97757;97758;97759 97757 4 KVIASMTVGK ELNSDKKEKKKEAVKKVIASMTVGKDVSAL KEAVKKVIASMTVGKDVSALFPDVVNCMQT K K V G K D 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 1 1 0 0 2 0 0 10 1 1032.6002 Q10567;C9J1E7 Q10567 36 45 AP1B1 AP-1 complex subunit beta-1 yes no 2 0.013243 45.368 By MS/MS 1 1.2418 1.2013 NaN 1 Median NaN NaN NaN 0 0 Median 1.2418 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2904500 1444700 1459800 0 0 0 2904500 1444700 1459800 0 0 0 0 0 0 0 0 0 0 0 0 18450 2752 19231 96114 97760;97761 97760 2 KVIDDTNITR LAMRQSVENDIHGLRKVIDDTNITRLQLET IHGLRKVIDDTNITRLQLETEIEALKEELL R K V T R L 0 1 1 2 0 0 0 0 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 1 1173.6354 P05783;F8VZY9 P05783 187 196 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.00055313 79.148 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 4 6 1.2009 1.1602 22.283 21 Median 1.3212 1.3639 19.897 2 0 Median 1.3241 1.2082 18.284 3 0 Median 1.2088 1.3317 9.1433 3 0 Median 1.156 1.0543 6.561 3 0 Median 1.3744 1.4723 16.315 4 0 Median 1.0818 0.97175 11.871 6 1 Median 176190000 77940000 98250000 21593000 9935800 11657000 15225000 6175300 9050100 30055000 13676000 16379000 25041000 11478000 13564000 48569000 20053000 28516000 35706000 16622000 19084000 18451 1869 19232 96115;96116;96117;96118;96119;96120;96121;96122;96123;96124;96125;96126;96127;96128;96129;96130;96131;96132;96133;96134;96135 97762;97763;97764;97765;97766;97767;97768;97769;97770;97771;97772;97773;97774;97775;97776;97777;97778;97779;97780;97781;97782;97783;97784;97785;97786;97787 97780 26 KVIEEQLEPAVEK KVIEPQYFGLAYLFRKVIEEQLEPAVEKIS FRKVIEEQLEPAVEKISIMAERLANQFAIY R K V E K I 1 0 0 0 0 1 4 0 0 1 1 2 0 0 1 0 0 0 0 2 0 0 13 1 1510.8243 P42704 P42704 1224 1236 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 4.3553E-17 193.23 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.9292 0.92746 10.265 6 Median 0.88586 0.92535 5.9424 2 0 Median 1.1392 1.0581 5.6125 2 0 Median 0.72716 0.83222 NaN 1 0 Median 0.93571 0.89133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60380000 29906000 30474000 37527000 19954000 17573000 16031000 6603000 9428100 3268000 1763400 1504600 3554400 1586100 1968300 0 0 0 0 0 0 18452 2315 19233 96136;96137;96138;96139;96140;96141 97788;97789;97790;97791;97792;97793;97794;97795;97796;97797 97795 10 KVIQYLAHVASSHK LCTGESGAGKTENTKKVIQYLAHVASSHKG KKVIQYLAHVASSHKGRKDHNIPGELERQL K K V H K G 2 0 0 0 0 1 0 0 2 1 1 2 0 0 0 2 0 0 1 2 0 0 14 1 1579.8835 P35580 P35580 190 203 MYH10 Myosin-10 yes yes 2;3 3.4216E-16 142.08 By MS/MS By MS/MS 2 1 1.3505 1.3252 16.555 3 Median 1.2086 1.1705 17.556 2 1 Median 1.4674 1.415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27053000 12135000 14918000 22506000 10275000 12231000 4546400 1859900 2686500 0 0 0 0 0 0 0 0 0 0 0 0 18453 2245 19234 96142;96143;96144 97798;97799;97800;97801 97799 4 KVIQYLAYVASSHK LCTGESGAGKTENTKKVIQYLAYVASSHKS KKVIQYLAYVASSHKSKKDQGELERQLLQA K K V H K S 2 0 0 0 0 1 0 0 1 1 1 2 0 0 0 2 0 0 2 2 0 0 14 1 1605.8879 P35579;Q5BKV1 P35579 186 199 MYH9 Myosin-9 yes no 3 6.5645E-05 74.678 By MS/MS By MS/MS By matching 1 1 1 1.2852 1.1922 7.808 3 Plateau 1.2852 1.1922 NaN 1 0 Median 1.186 1.1332 NaN 1 0 Median 1.1423 1.321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78426000 32645000 45780000 54559000 23030000 31529000 15336000 5854100 9482200 8530800 3761300 4769400 0 0 0 0 0 0 0 0 0 18454 2244 19235 96145;96146;96147 97802;97803;97804;97805;97806;97807 97806 6 KVITMFVQR SNSIPGIESPFEQAKKVITMFVQRQVFAEN PFEQAKKVITMFVQRQVFAENKDEIALVLF K K V Q R Q 0 1 0 0 0 1 0 0 0 1 0 1 1 1 0 0 1 0 0 2 0 0 9 1 1120.6427 P13010;C9JZ81;H7C0H9 P13010 36 44 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.0008564 110.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 6 3 1 1.1786 1.2146 22.059 14 Median 1.3572 1.3907 18.122 2 0 Median 1.4529 1.4472 16.07 2 0 Median 1.0109 1.0594 25.573 6 1 Median 1.3349 1.2283 8.4317 3 0 Median 0.93432 1.0275 NaN 1 0 Median NaN NaN NaN 0 0 Median 235780000 111200000 124580000 36769000 16619000 20151000 16819000 7381300 9437700 129410000 64141000 65271000 45374000 19460000 25913000 7402300 3598600 3803700 0 0 0 18455 1986 19236;19237 96148;96149;96150;96151;96152;96153;96154;96155;96156;96157;96158;96159;96160;96161 97808;97809;97810;97811;97812;97813;97814;97815;97816;97817;97818;97819;97820 97811 770 13 KVIVDFSSPNIAK LLVNGVQLPALGENKKVIVDFSSPNIAKEM NKKVIVDFSSPNIAKEMHVGHLRSTIIGES K K V A K E 1 0 1 1 0 0 0 0 0 2 0 2 0 1 1 2 0 0 0 2 0 0 13 1 1416.7977 P54136 P54136 193 205 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.001298 62.408 By MS/MS 1 1.296 1.2187 NaN 1 Median 1.296 1.2187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8882100 3550600 5331500 8882100 3550600 5331500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18456 2480 19238 96162 97821 97821 1 KVLAQYYTVTDEHHR KQAPDNEITIKKLRKKVLAQYYTVTDEHHR KVLAQYYTVTDEHHRSEEELLVIFNKKISK K K V H R S 1 1 0 1 0 1 1 0 2 0 1 1 0 0 0 0 2 0 2 2 0 0 15 1 1858.9326 Q9NX58 Q9NX58 335 349 LYAR Cell growth-regulating nucleolar protein yes yes 3;4 3.5558E-10 105.03 By MS/MS 2 1.0446 1.0578 6.2709 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0446 1.0578 6.2709 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11910000 5585100 6325200 0 0 0 0 0 0 11910000 5585100 6325200 0 0 0 0 0 0 0 0 0 18457 4160 19239 96163;96164 97822;97823;97824;97825 97823 4 KVLCLAVAVGHVK AKVDEVKSTIKFQMKKVLCLAVAVGHVKMT MKKVLCLAVAVGHVKMTDDELVYNIHLAVN K K V V K M 2 0 0 0 1 0 0 1 1 0 2 2 0 0 0 0 0 0 0 4 0 0 13 1 1392.8275 P62906 P62906 161 173 RPL10A 60S ribosomal protein L10a yes yes 3 0.00038075 51.211 By MS/MS 1 1.1534 1.0556 NaN 1 Median NaN NaN NaN 0 0 Median 1.1534 1.0556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2567600 993340 1574300 0 0 0 2567600 993340 1574300 0 0 0 0 0 0 0 0 0 0 0 0 18458 2608 19240 96165 97826 97826 1 KVLEDVTGEEFVLFMK VLTKEVEELILTESKKVLEDVTGEEFVLFM VLEDVTGEEFVLFMKILSGLKSLQTVSGRQ K K V M K I 0 0 0 1 0 0 3 1 0 0 2 2 1 2 0 0 1 0 0 3 0 0 16 1 1882.975 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 181 196 API5 Apoptosis inhibitor 5 yes no 3 0.046523 10.816 By matching By MS/MS 1 1 5.7417 5.5175 212.99 2 Median NaN NaN NaN 0 0 Median 28.234 24.879 NaN 1 0 Median 1.1676 1.2236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4840100 1835900 3004200 0 0 0 838740 50589 788160 4001400 1785300 2216100 0 0 0 0 0 0 0 0 0 18459 1103 19241 96166;96167 97827;97828 97828 2 KVLEEEEQR ALELEELKKKREERRKVLEEEEQRRKQEEA KREERRKVLEEEEQRRKQEEADRKLREEEE R K V Q R R 0 1 0 0 0 1 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1158.5881 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 316 324 CALD1 Caldesmon yes no 2 0.033492 38.086 By MS/MS 1 0.87441 0.93036 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87441 0.93036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1264400 587560 676860 0 0 0 0 0 0 1264400 587560 676860 0 0 0 0 0 0 0 0 0 18460 928 19242 96168 97829 97829 1 KVLEFER WVGPLPVEATLAKKRKVLEFERVYLDNLPS EATLAKKRKVLEFERVYLDNLPSASMYERS R K V E R V 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 1 919.51272 Q96BP3;D6RB19;D6RHV0 Q96BP3 65 71 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.030711 58.917 By MS/MS By matching 1 1 0.9759 0.98477 14.115 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0251 1.0881 NaN 1 0 Median 0.92909 0.89122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4286300 2113800 2172600 0 0 0 0 0 0 3585800 1810200 1775600 700590 303580 397010 0 0 0 0 0 0 18461 3609 19243 96169;96170 97830 97830 1 KVLELTGK TALHYIHDGIGAMVRKVLELTGK_______ GIGAMVRKVLELTGK_______________ R K V G K - 0 0 0 0 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 8 1 886.54877 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5 A0A096LPI6 272 279 yes no 2 0.036266 42.599 By MS/MS By matching By matching 1 1 1 1.0378 1.0554 14.096 3 Median 1.0378 1.0554 NaN 1 0 Median 1.4176 1.2974 NaN 1 0 Median 0.97595 0.99097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13376000 5972200 7404200 9390800 4299500 5091300 2525400 1095100 1430400 1460200 577690 882490 0 0 0 0 0 0 0 0 0 18462 144 19244 96171;96172;96173 97831 97831 1 KVLGSSTSATNSTSVSSR VPGTYRKVVAARAPRKVLGSSTSATNSTSV GSSTSATNSTSVSSRKAENKYAGGNPVCVR R K V S R K 1 1 1 0 0 0 0 1 0 0 1 1 0 0 0 7 3 0 0 2 0 0 18 1 1767.8963 H0YMA4;A0A0U1RQM0;Q15004;A0A0U1RQC1 H0YMA4 24 41 KIAA0101 PCNA-associated factor yes no 3 0.0036269 25.508 By matching By MS/MS By MS/MS 1 1 1 1.0488 0.94137 6.1997 3 Median 0.94876 0.94137 NaN 1 0 Median 1.0842 0.95629 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0488 0.85293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4376800 2134200 2242600 1232800 607730 625080 746370 385010 361360 0 0 0 2397600 1141500 1256200 0 0 0 0 0 0 18463 302 19245 96174;96175;96176 97832;97833;97834;97835 97835 4 KVLGVDQSEILYQAMDIIR GTGILSMFAAKAGAKKVLGVDQSEILYQAM VDQSEILYQAMDIIRLNKLEDTITLIKGKI K K V I R L 1 1 0 2 0 2 1 1 0 3 2 1 1 0 0 1 0 0 1 2 0 0 19 1 2190.1718 O60678 O60678 280 298 PRMT3 Protein arginine N-methyltransferase 3 yes yes 3 0.0067277 23.1 By MS/MS By MS/MS 1 1 1.2532 1.2133 18.296 2 Median 1.3604 1.3809 NaN 1 0 Median 1.1544 1.0661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2356400 929950 1426400 1414600 506590 908030 941770 423360 518410 0 0 0 0 0 0 0 0 0 0 0 0 18464 1625 19246 96177;96178 97836;97837 97836 2 KVLIIGGGDGGVLR EMIANLPLCSHPNPRKVLIIGGGDGGVLRE RKVLIIGGGDGGVLREVVKHPSVESVVQCE R K V L R E 0 1 0 1 0 0 0 5 0 2 2 1 0 0 0 0 0 0 0 2 0 0 14 1 1352.814 P19623;K7ESL0 P19623 96 109 SRM Spermidine synthase yes no 2;3 1.5593E-07 97.86 By MS/MS By MS/MS 2 2 1.1925 1.1395 16.831 4 Median 1.289 1.2987 10.093 2 0 Median 1.1161 1.0046 9.422 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44208000 19263000 24946000 34464000 14835000 19629000 9743900 4427300 5316600 0 0 0 0 0 0 0 0 0 0 0 0 18465 2068 19247 96179;96180;96181;96182 97838;97839;97840;97841 97838 4 KVLLGVGDPK DLRLLLETHLPSKKKKVLLGVGDPKIGAAI PSKKKKVLLGVGDPKIGAAIQEELGYNCQT K K V P K I 0 0 0 1 0 0 0 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 10 1 1024.6281 O00567;A0A494C128;Q5JXT2 O00567 90 99 NOP56 Nucleolar protein 56 yes no 2 0.019554 39.622 By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1.0269 1.112 40.9 6 Median 0.95741 0.97441 NaN 1 0 Median 1.3046 1.1961 NaN 1 0 Median 0.96816 1.0893 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0237 1.1056 3.7453 2 0 Median 3.2903 2.9325 NaN 1 0 Median 15460000 7302900 8157200 4791200 2381600 2409600 1078100 455550 622550 5227500 2736200 2491300 0 0 0 2645500 1328000 1317500 1717800 401600 1316200 18466 1472 19248 96183;96184;96185;96186;96187;96188 97842 97842 1 KVLPLLK YDQREYIGRSVHYWKKVLPLLKIIKKKNSI GRSVHYWKKVLPLLKIIKKKNSIPEPIDPL K K V L K I 0 0 0 0 0 0 0 0 0 0 3 2 0 0 1 0 0 0 0 1 0 0 7 1 809.57386 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 608 614 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0017167 132.72 By MS/MS By matching By matching 2 1 2 1.0952 1.1127 8.2941 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91323 1.0424 6.7159 2 0 Median 1.0952 1.1127 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3479 1.2128 0.28217 2 0 Median 13571000 6210000 7361400 0 0 0 0 0 0 10056000 4818100 5238000 1236400 621950 614420 0 0 0 2279000 770000 1509000 18467 2401;525;3762 19249 96189;96190;96191;96192;96193 97843 97843 1 KVLQLLR VIRIRGINGVSPKVRKVLQLLRLRQIFNGT NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA R K V L R L 0 1 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 1 868.58582 P18124;A8MUD9;C9JIJ5;C9JZ88 P18124 107 113 RPL7 60S ribosomal protein L7 yes no 2 0.0027944 124.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 3 1.2665 1.2868 8.485 12 Median 1.1921 1.2194 NaN 1 0 Median 1.2071 1.0854 2.1887 2 0 Median 1.2356 1.3125 0.79474 2 0 Median 1.3856 1.2664 4.698 2 0 Median 1.2483 1.3436 3.353 2 0 Median 1.4569 1.2688 7.7746 3 0 Median 383440000 170050000 213390000 115180000 53248000 61928000 60612000 26892000 33719000 18383000 8038400 10344000 34942000 15430000 19512000 87928000 38455000 49473000 66402000 27986000 38417000 18468 2056 19250 96194;96195;96196;96197;96198;96199;96200;96201;96202;96203;96204;96205 97844;97845;97846;97847;97848;97849;97850;97851;97852;97853;97854;97855;97856;97857;97858;97859;97860 97860 17 KVLQSPATTVVR YFGRDPADGRMRLSRKVLQSPATTVVRTLN LSRKVLQSPATTVVRTLNDRSSIVMGEPIS R K V V R T 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 1 2 0 0 3 0 0 12 1 1297.7718 Q8TCS8 Q8TCS8 750 761 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2;3 0.00014979 65.179 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1378 1.0768 17.565 6 Median 0.9109 0.9274 NaN 1 0 Median 1.3518 1.3556 4.6767 2 0 Median 0.85929 0.9129 NaN 1 0 Median 1.1378 1.0768 0.65671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10699000 4748400 5951100 1331500 677820 653660 2332800 852480 1480400 2456300 1315100 1141100 4578900 1902900 2676000 0 0 0 0 0 0 18469 3467 19251 96206;96207;96208;96209;96210;96211 97861;97862;97863;97864;97865;97866 97862 5 KVLSPYDLTHK WTFERIATANMLGIRKVLSPYDLTHKGKYW LGIRKVLSPYDLTHKGKYWGKFYMPKRV__ R K V H K G 0 0 0 1 0 0 0 0 1 0 2 2 0 0 1 1 1 0 1 1 0 0 11 1 1299.7187 Q9NX20 Q9NX20 228 238 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 3 0.0014053 45.257 By MS/MS By matching 1 1 0.80121 0.81014 13.546 2 Median 0.87598 0.89158 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73282 0.73615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7359500 3979000 3380500 4615600 2455400 2160200 0 0 0 2743900 1523600 1220300 0 0 0 0 0 0 0 0 0 18470 4155 19252 96212;96213 97867 97867 1 KVMDDLDR QWQKDELRETLKSLKKVMDDLDRASKADVQ ETLKSLKKVMDDLDRASKADVQKRVLEKTK K K V D R A 0 1 0 3 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 1 990.48043 P49588 P49588 824 831 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.014564 59.245 By matching By MS/MS 1 1 1.0152 0.99975 6.7883 2 Median 1.014 1.0489 NaN 1 0 Median 1.0164 0.95289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6361800 3170900 3190900 1266000 633370 632660 5095700 2537500 2558200 0 0 0 0 0 0 0 0 0 0 0 0 18471 2385 19253 96214;96215 97868;97869 97869 2 KVMHLQDVEVK EKLLKSQRNLVAKMKKVMHLQDVEVKNATQ AKMKKVMHLQDVEVKNATQWKDKIKSQRMR K K V V K N 0 0 0 1 0 1 1 0 1 0 1 2 1 0 0 0 0 0 0 3 0 0 11 1 1324.7173 H7C0Q6;Q9C037 H7C0Q6 49 59 TRIM4 E3 ubiquitin-protein ligase TRIM4 yes no 2 0.0014021 63.816 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 4 4 2 3 1.0719 1.0039 49.185 23 Median 1.2289 1.1695 12.755 4 0 Median 1.052 0.98076 7.1949 6 0 Median 1.1159 1.2544 100.6 4 0 Median 0.99693 0.93497 59.619 4 0 Median 0.76815 0.82549 68.912 2 0 Median 1.1846 1.0039 4.4035 3 0 Median 2453300000 1126600000 1326700000 892030000 400590000 491440000 68435000 32204000 36231000 568400000 250700000 317700000 872450000 418830000 453620000 16791000 8384700 8405900 35231000 15877000 19354000 18472 1257 19254 96216;96217;96218;96219;96220;96221;96222;96223;96224;96225;96226;96227;96228;96229;96230;96231;96232;96233;96234;96235;96236;96237;96238 97870;97871;97872;97873;97874;97875;97876;97877;97878;97879;97880;97881;97882;97883;97884;97885;97886 97880 420 17 KVMLTVFK FPVFKKYDRNGTQMKKVMLTVFKHNHGAYQ RNGTQMKKVMLTVFKHNHGAYQFFREALQF K K V F K H 0 0 0 0 0 0 0 0 0 0 1 2 1 1 0 0 1 0 0 2 0 0 8 1 964.57796 F5H2C9;Q86UY6 F5H2C9 57 64 NAA40 N-alpha-acetyltransferase 40 yes no 2 0.03924 41.029 By MS/MS By matching 1 1 1.0845 1.0431 27.721 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1904 1.269 NaN 1 0 Median 0.98794 0.85743 NaN 1 0 Median 7062000 3216500 3845500 0 0 0 0 0 0 0 0 0 0 0 0 5748100 2594200 3153900 1313900 622340 691560 18473 1027 19255 96239;96240 97887 97887 1 KVMSQEIQEQLHK KLKKMVKDQQEAEKKKVMSQEIQEQLHKQQ KKKVMSQEIQEQLHKQQEVIADKQMSVKED K K V H K Q 0 0 0 0 0 3 2 0 1 1 1 2 1 0 0 1 0 0 0 1 0 0 13 1 1596.8294 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3254 3266 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.001762 37.613 By matching By MS/MS 1 1 1.2109 1.2636 29.789 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4552 1.5599 NaN 1 0 Median 1.0076 1.0236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11406000 5623600 5781900 0 0 0 0 0 0 7565500 4000400 3565100 3840000 1623300 2216700 0 0 0 0 0 0 18474 2865 19256 96241;96242 97888 97888 1 KVNAVFEWHITK EIGRRLKDIGPEVVKKVNAVFEWHITKGGN VVKKVNAVFEWHITKGGNIGAKWTIDLKSG K K V T K G 1 0 1 0 0 0 1 0 1 1 0 2 0 1 0 0 1 1 0 2 0 0 12 1 1470.7983 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 645 656 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 0.067613 9.3626 By MS/MS 1 0.88452 0.99277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88452 0.99277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6360500 3043000 3317500 0 0 0 0 0 0 6360500 3043000 3317500 0 0 0 0 0 0 0 0 0 18475 393 19257 96243 97889 97889 1 KVNELQNQPLELDTMLR SLNAQESMKNTEDERKVNELQNQPLELDTM NELQNQPLELDTMLRNEQLEEIEKLYTQLE R K V L R N 0 1 2 1 0 2 2 0 0 0 4 1 1 0 1 0 1 0 0 1 0 0 17 1 2040.0674 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2435 2451 SYNE2 Nesprin-2 yes no 3 1.0659E-07 89.866 By MS/MS By matching 1 1 0.62384 0.71565 6.956 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58785 0.6813 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66205 0.75173 NaN 1 0 Median NaN NaN NaN 0 0 Median 11092000 6310300 4781200 0 0 0 0 0 0 8921800 5281000 3640800 0 0 0 2169700 1029300 1140300 0 0 0 18476 3521 19258 96244;96245 97890;97891 97891 2 KVNEMIVTGQYGR PDPVEETRHHAEVVKKVNEMIVTGQYGRLF VKKVNEMIVTGQYGRLFAVVHFASRQWKVT K K V G R L 0 1 1 0 0 1 1 2 0 1 0 1 1 0 0 0 1 0 1 2 0 0 13 1 1493.766 Q7Z2W9;F5H7V8 Q7Z2W9 82 94 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2;3 0.0001495 72.652 By MS/MS By MS/MS By matching 2 1 1 1.1049 1.0665 21.965 4 Median 1.1049 1.0939 1.6383 2 0 Median 1.1923 1.0519 NaN 1 0 Median 0.69435 0.69724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18688000 8543800 10145000 13258000 5365600 7892800 1785900 841480 944430 3644000 2336700 1307400 0 0 0 0 0 0 0 0 0 18477 3237 19259 96246;96247;96248;96249 97892;97893;97894;97895;97896 97895 5 KVNLGVGAYR VFKLTADFREDPDPRKVNLGVGAYRTDDCH DPDPRKVNLGVGAYRTDDCHPWVLPVVKKV R K V Y R T 1 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 0 1 2 0 0 10 1 1075.6138 P17174 P17174 33 42 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00059929 96.253 By MS/MS By MS/MS 1 2 1.228 1.272 11.553 3 Plateau 1.2511 1.3404 NaN 1 0 Median 1.1651 1.1261 8.0389 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18240000 8139500 10100000 6819500 2694100 4125400 11420000 5445400 5975000 0 0 0 0 0 0 0 0 0 0 0 0 18478 2038 19260 96250;96251;96252 97897;97898;97899;97900 97900 4 KVNNADDFPNLFR VMIKASEGGGGKGIRKVNNADDFPNLFRQV IRKVNNADDFPNLFRQVQAEVPGSPIFVMR R K V F R Q 1 1 3 2 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 13 1 1548.7685 Q13085 Q13085 323 335 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 3 0.00028489 57.802 By MS/MS By matching 1 1 0.97943 0.98062 33.289 2 Median 0.74902 0.77495 NaN 1 0 Median 1.2807 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8456700 4822900 3633800 7974100 4646900 3327300 482560 176050 306510 0 0 0 0 0 0 0 0 0 0 0 0 18479 2784 19261 96253;96254 97901 97901 1 KVNPDLQVEVKPSIR EMHLKGRRHRLQYKKKVNPDLQVEVKPSIR KVNPDLQVEVKPSIRARKIQEEKMRKQMQK K K V I R A 0 1 1 1 0 1 1 0 0 1 1 2 0 0 2 1 0 0 0 3 0 0 15 2 1720.9836 Q96KR1 Q96KR1 613 627 ZFR Zinc finger RNA-binding protein yes yes 3;4 6.1737E-07 93.754 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 2 1 0.65169 0.7522 36.877 9 Median 1.5202 1.7279 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6034 0.68785 27.322 4 0 Median 0.93215 1.0623 NaN 1 0 Median 0.56845 0.66907 18.05 2 0 Median 0.65169 0.66861 NaN 1 0 Median 56832000 32142000 24689000 1136100 384900 751220 0 0 0 33126000 19446000 13681000 4748500 2428000 2320500 16183000 8877700 7305700 1637200 1006100 631060 18480 3697 19262 96255;96256;96257;96258;96259;96260;96261;96262;96263 97902;97903;97904;97905;97906;97907;97908;97909 97903 8 KVNTGFLMSSYK DAKGNEIEPNFSATRKVNTGFLMSSYKVEA ATRKVNTGFLMSSYKVEAKGDTDRLTPEAL R K V Y K V 0 0 1 0 0 0 0 1 0 0 1 2 1 1 0 2 1 0 1 1 0 0 12 1 1373.7013 A0A0A6YYH1;Q7Z6K5 A0A0A6YYH1 90 101 C15orf38-AP3S2;ARPIN Arpin yes no 2 0.0031925 68.536 By MS/MS 1 0.74932 0.76119 NaN 1 Median 0.74932 0.76119 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17855000 10022000 7832900 17855000 10022000 7832900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18481 204 19263 96264 97910 97910 1 KVNTGFLMSSYKVEAK DAKGNEIEPNFSATRKVNTGFLMSSYKVEA VNTGFLMSSYKVEAKGDTDRLTPEALKGLV R K V A K G 1 0 1 0 0 0 1 1 0 0 1 3 1 1 0 2 1 0 1 2 0 0 16 2 1800.9444 A0A0A6YYH1;Q7Z6K5 A0A0A6YYH1 90 105 C15orf38-AP3S2;ARPIN Arpin yes no 3 0.00029308 40.856 By MS/MS By matching 1 1 0.91064 0.92574 13.846 2 Median 0.79483 0.8394 NaN 1 0 Median 1.0433 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11667000 5943700 5723100 10225000 5322500 4903000 1441400 621210 820170 0 0 0 0 0 0 0 0 0 0 0 0 18482 204 19264 96265;96266 97911 97911 1 KVPAADKAPYLQK PDWSSRCKQIMKLWRKVPAADKAPYLQKAK WRKVPAADKAPYLQKAKDNRAAHRINKVQK R K V Q K A 3 0 0 1 0 1 0 0 0 0 1 3 0 0 2 0 0 0 1 1 0 0 13 2 1427.8136 O14686 O14686 2051 2063 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.00047205 53.754 By MS/MS By MS/MS 1 1 0.71805 0.87824 13.021 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64514 0.80099 NaN 1 0 Median 0.79919 0.96294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9702600 5726000 3976700 0 0 0 0 0 0 7908500 4837000 3071500 1794200 888980 905170 0 0 0 0 0 0 18483 1490 19265 96267;96268 97912;97913;97914;97915 97913 4 KVPEFQFLIGDEAATHLK LCGFRPVEEIVTFLKKVPEFQFLIGDEAAT EFQFLIGDEAATHLKQTMSHDSQAVASSLQ K K V L K Q 2 0 0 1 0 1 2 1 1 1 2 2 0 2 1 0 1 0 0 1 0 0 18 1 2042.0837 P34949;H3BPP3;H3BPB8;H3BPM5;F5GX71;H3BUZ9;H3BNY8;H3BT48;H3BP57;H3BMZ9;H3BQX0;H3BU66 P34949 163 180 MPI Mannose-6-phosphate isomerase yes no 3 0.022379 25.198 By MS/MS By MS/MS 1 1 0.99559 0.91622 22.33 2 Median 0.83711 0.78239 NaN 1 1 Median 1.1841 1.0729 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5751600 2962800 2788800 3594100 1933300 1660900 2157500 1029600 1127900 0 0 0 0 0 0 0 0 0 0 0 0 18484 1004 19266 96269;96270 97916;97917 97916 2 KVPGEGLPLPK IPVVFKDVIRPGMRRKVPGEGLPLPKTPEK GMRRKVPGEGLPLPKTPEKRGDLIIEFEVI R K V P K T 0 0 0 0 0 0 1 2 0 0 2 2 0 0 3 0 0 0 0 1 0 0 11 1 1133.6808 P25685 P25685 296 306 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 0.0039914 51.436 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 3 2 1 2 0.60364 0.58513 18.67 10 Median 0.61603 0.57374 NaN 1 0 Median 0.5843 0.52927 NaN 1 0 Median 0.5915 0.59811 8.7193 3 0 Median 0.66781 0.59772 0.23046 2 0 Median 0.86448 0.9061 NaN 1 0 Median 0.54967 0.47306 0.50753 2 0 Median 42701000 25618000 17083000 7550500 4495600 3055000 2391200 1473100 918150 23661000 14157000 9504600 6637000 3885800 2751300 871810 469890 401920 1589600 1137200 452380 18485 2134 19267 96271;96272;96273;96274;96275;96276;96277;96278;96279;96280 97918;97919;97920;97921;97922 97921 5 KVPGVTAIELDEDTGTFR GLAIGTHGSNIQQARKVPGVTAIELDEDTG GVTAIELDEDTGTFRIYGESADAVKKARGF R K V F R I 1 1 0 2 0 0 2 2 0 1 1 1 0 1 1 0 3 0 0 2 0 0 18 1 1946.9949 B4DXZ6;P51114;E7EU85;E9PFF5 B4DXZ6 233 250 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.341E-06 61.648 By MS/MS By MS/MS 2 2 0.7578 0.77814 21.27 4 Median 0.7578 0.76854 21.152 2 1 Median NaN NaN NaN 0 0 Median 0.79498 0.83317 29.061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38657000 23596000 15061000 20696000 11480000 9216000 0 0 0 17960000 12116000 5844700 0 0 0 0 0 0 0 0 0 18486 608 19268 96281;96282;96283;96284 97923;97924;97925 97925 3 KVPNSEEYHSHLFMAYAR HRPELVTKLYEAAVKKVPNSEEYHSHLFMA NSEEYHSHLFMAYARVGEYKKMQQAGMALY K K V A R V 2 1 1 0 0 0 2 0 2 0 1 1 1 1 1 2 0 0 2 1 0 0 18 1 2178.0317 Q14CX7;H0YHR9 Q14CX7 108 125 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 4 0.010978 31.514 By MS/MS 1 1.798 1.7279 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.798 1.7279 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3107500 1126800 1980600 0 0 0 0 0 0 0 0 0 3107500 1126800 1980600 0 0 0 0 0 0 18487 2908 19269 96285 97926 97926 1 KVPPELNNISK KKVQFGNENTKLELRKVPPELNNISKLNEH LELRKVPPELNNISKLNEHFSRFGTLVNLQ R K V S K L 0 0 2 0 0 0 1 0 0 1 1 2 0 0 2 1 0 0 0 1 0 0 11 1 1237.703 Q5T8P6 Q5T8P6 538 548 RBM26 RNA-binding protein 26 no no 2 0.0358 33.229 By matching By MS/MS By matching 1 1 1 0.696 0.65034 6.1949 3 Median NaN NaN NaN 0 0 Median 0.696 0.65034 NaN 1 0 Median 0.55403 0.63412 NaN 1 0 Median 0.74882 0.71331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7292000 4512700 2779300 0 0 0 2523800 1547400 976440 3794300 2444400 1349800 973890 520920 452970 0 0 0 0 0 0 18488 3097 19270 96286;96287;96288 97927 97927 1 KVPQVSTPTLVEVSR GEYGFQNALIVRYTRKVPQVSTPTLVEVSR KVPQVSTPTLVEVSRSLGKVGTRCCTKPES R K V S R S 0 1 0 0 0 1 1 0 0 0 1 1 0 0 2 2 2 0 0 4 0 0 15 1 1638.9305 CON__P02769;A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;A0A087WWT3;C9JKR2;D6RHD5;B7WNR0 CON__P02769 437 451 ALB Serum albumin no no 2;3 2.9094E-27 153.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 10 14 8 7 3 0.085971 0.083697 136.86 42 Median 0.046787 0.047281 162.56 8 8 Median 0.0889 0.083697 81.001 10 10 Median 0.051125 0.05616 128.65 10 10 Median 0.057361 0.052086 106.45 6 6 Median 0.1108 0.11297 103.05 5 5 Median 2.1809 1.9146 162.02 3 3 Plateau 1977600000 1933100000 44548000 1531900000 1520600000 11235000 95835000 92129000 3706000 199100000 192140000 6956700 31830000 30833000 997470 99286000 88016000 11270000 19688000 9305900 10383000 + 18489 746;240 19271 96289;96290;96291;96292;96293;96294;96295;96296;96297;96298;96299;96300;96301;96302;96303;96304;96305;96306;96307;96308;96309;96310;96311;96312;96313;96314;96315;96316;96317;96318;96319;96320;96321;96322;96323;96324;96325;96326;96327;96328;96329;96330;96331;96332;96333;96334;96335;96336;96337;96338;96339;96340;96341;96342;96343;96344;96345 97928;97929;97930;97931;97932;97933;97934;97935;97936;97937;97938;97939;97940;97941;97942;97943;97944;97945;97946;97947;97948;97949;97950;97951;97952;97953;97954;97955;97956;97957;97958;97959;97960;97961;97962;97963;97964;97965;97966;97967;97968;97969;97970;97971;97972;97973;97974;97975;97976;97977;97978;97979;97980;97981;97982;97983;97984;97985;97986;97987;97988;97989;97990;97991;97992;97993;97994;97995;97996;97997;97998 97991 71 KVPVSVNLLSK RLLPSLIGRHFYQRKKVPVSVNLLSKNLSR YQRKKVPVSVNLLSKNLSREINDCIGGTVL K K V S K N 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 2 0 0 0 3 0 0 11 1 1182.7336 O76021;J3QSV6;I3L3C4 O76021 178 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0025208 57.174 By matching By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 5 5 0.99292 0.99199 31.204 14 Median 3.2075 3.0381 NaN 1 0 Median 0.99655 0.93082 NaN 1 0 Median 0.94679 0.9905 NaN 1 0 Median 1.1724 1.0825 NaN 1 0 Median 0.95688 1.0269 4.234 5 0 Median 1.0757 0.92714 7.7576 5 0 Median 240830000 117500000 123330000 3537000 1342000 2195000 9068800 4198800 4870000 6509100 3182200 3326900 2894900 1135100 1759800 166570000 82131000 84434000 52252000 25507000 26745000 18490 1716 19272 96346;96347;96348;96349;96350;96351;96352;96353;96354;96355;96356;96357;96358;96359 97999;98000;98001;98002;98003;98004;98005;98006;98007;98008;98009;98010 98001 12 KVPWFDQQNGR ERNGSSLAKIYTEAKKVPWFDQQNGRTYLK TEAKKVPWFDQQNGRTYLKYSIKALVQNDT K K V G R T 0 1 1 1 0 2 0 1 0 0 0 1 0 1 1 0 0 1 0 1 0 0 11 1 1373.684 Q92522 Q92522 76 86 H1FX Histone H1x yes yes 2;3 4.0288E-05 128.36 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 2 1 0.80411 0.79411 31.859 10 Median 0.88086 0.88555 8.9729 2 0 Median 1.055 0.95861 33.064 2 0 Median 0.65997 0.70223 27.194 2 0 Median 0.62631 0.55442 NaN 1 1 Median 0.62937 0.66745 17.677 2 0 Median 1.6035 1.4749 NaN 1 0 Median 78367000 45371000 32996000 26475000 14892000 11583000 3718000 1772400 1945600 10199000 6129400 4069600 1122800 613200 509640 36580000 21860000 14720000 272240 104300 167940 18491 3531 19273 96360;96361;96362;96363;96364;96365;96366;96367;96368;96369 98011;98012;98013;98014;98015;98016;98017;98018;98019;98020;98021;98022 98014 12 KVQAEDEANGLQTTPASR EPLKGIFTRPSKLTRKVQAEDEANGLQTTP AEDEANGLQTTPASRATSPLCTSTASMVSS R K V S R A 3 1 1 1 0 2 2 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 18 1 1913.9443 J3KP58;P30622;F5H6A0;F5H1T5 J3KP58 127 144 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 3 0.019608 15.766 By MS/MS 1 0.70591 0.7228 NaN 1 Median 0.70591 0.7228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 909900 408140 501760 909900 408140 501760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18492 1308 19274 96370 98023 98023 1 KVQFAPEKPGPQPSAETTR EEKSHKRNSVRLVIRKVQFAPEKPGPQPSA APEKPGPQPSAETTRHFLMSDRSLHLEASL R K V T R H 2 1 0 0 0 2 2 1 0 0 0 2 0 1 4 1 2 0 0 1 0 0 19 2 2067.0749 P32121;I3L412;K7ENA6 P32121 171 189 ARRB2 Beta-arrestin-2 yes no 3 0.00065068 31.818 By MS/MS By MS/MS 2 1 0.68517 0.76817 17.261 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59099 0.67402 18.491 2 0 Median 0.75046 0.8193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9283400 5293200 3990200 0 0 0 0 0 0 5748900 3429800 2319100 3534400 1863400 1671100 0 0 0 0 0 0 18493 2216 19275 96371;96372;96373 98024;98025 98024 2 KVQFGNENTKLELR DKPNFNRTNSPGFQKKVQFGNENTKLELRK KKVQFGNENTKLELRKVPPELNNISKLNEH K K V L R K 0 1 2 0 0 1 2 1 0 0 2 2 0 1 0 0 1 0 0 1 0 0 14 2 1674.9053 Q5T8P6 Q5T8P6 524 537 RBM26 RNA-binding protein 26 no no 3;4 3.6315E-05 82.102 By MS/MS 2 0.81989 0.93425 5.6502 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81989 0.93425 5.6502 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10386000 5652500 4733400 0 0 0 0 0 0 10386000 5652500 4733400 0 0 0 0 0 0 0 0 0 18494 3097 19276 96374;96375 98026;98027 98027 2 KVQGGALEDSQLVAGVAFK MMLDDLLQLKMIGIKKVQGGALEDSQLVAG GALEDSQLVAGVAFKKTFSYAGFEMQPKKY K K V F K K 3 0 0 1 0 2 1 3 0 0 2 2 0 1 0 1 0 0 0 3 0 0 19 1 1916.0367 Q99832 Q99832 199 217 CCT7 T-complex protein 1 subunit eta yes yes 3 1.2011E-08 81.317 By MS/MS By MS/MS By matching 1 1 1 1.1916 1.1036 9.1214 3 Median 1.1916 1.1036 NaN 1 0 Median 1.2583 1.1786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1043 0.98418 NaN 1 0 Median 71793000 30439000 41354000 68206000 29202000 39004000 3455800 1175300 2280600 0 0 0 0 0 0 0 0 0 131540 61344 70191 18495 3771 19277 96376;96377;96378 98028;98029;98030 98028 3 KVQGGALEDSQLVAGVAFKK MMLDDLLQLKMIGIKKVQGGALEDSQLVAG ALEDSQLVAGVAFKKTFSYAGFEMQPKKYH K K V K K T 3 0 0 1 0 2 1 3 0 0 2 3 0 1 0 1 0 0 0 3 0 0 20 2 2044.1317 Q99832 Q99832 199 218 CCT7 T-complex protein 1 subunit eta yes yes 3 5.1181E-11 95.094 By MS/MS 1 1.3358 1.3631 NaN 1 Median 1.3358 1.3631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13995000 5900400 8095000 13995000 5900400 8095000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18496 3771 19278 96379 98031 98031 1 KVQHQDALQISDVVMASLLR DLQSLLCATLQNVLRKVQHQDALQISDVVM DALQISDVVMASLLRMFQSTAGSGGVQEDA R K V L R M 2 1 0 2 0 3 0 0 1 1 3 1 1 0 0 2 0 0 0 3 0 0 20 1 2250.2154 Q14974;J3KTM9 Q14974 594 613 KPNB1 Importin subunit beta-1 yes no 3 1.9313E-14 105.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2768 1.2148 31.88 5 Median 1.0784 1.1108 8.5957 2 0 Median 2.3815 2.3566 NaN 1 0 Median 1.2768 1.4493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3247 1.2148 NaN 1 1 Median 29778000 11803000 17974000 5788000 2697900 3090100 17910000 6353400 11556000 5230100 2375700 2854400 0 0 0 0 0 0 850010 376430 473570 18497 2904 19279 96380;96381;96382;96383;96384 98032;98033;98034;98035;98036;98037 98035 6 KVQPPQQNYSLAELDEK SPEYFQSVSFSGKRRKVQPPQQNYSLAELD QPPQQNYSLAELDEKISALKQALLRKSREA R K V E K I 1 0 1 1 0 3 2 0 0 0 2 2 0 0 2 1 0 0 1 1 0 0 17 1 1986.0058 Q9NS73 Q9NS73 304 320 MBIP MAP3K12-binding inhibitory protein 1 yes yes 3 9.7955E-06 50.653 By MS/MS 1 0.50165 0.54666 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50165 0.54666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8121200 6511200 1610000 0 0 0 0 0 0 8121200 6511200 1610000 0 0 0 0 0 0 0 0 0 18498 4097 19280 96385 98038 98038 1 KVQSDGQIVLVDDWIK MTLVTPLQLLLFASKKVQSDGQIVLVDDWI VQSDGQIVLVDDWIKLQISHEAAACITGLR K K V I K L 0 0 0 3 0 2 0 1 0 2 1 2 0 0 0 1 0 1 0 3 0 0 16 1 1841.9887 Q08211 Q08211 1074 1089 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.0098E-10 115.12 By MS/MS By MS/MS 2 1 1.2115 1.3998 23.994 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97323 1.1226 31.205 2 1 Median NaN NaN NaN 0 0 Median 1.1797 1.3217 NaN 1 0 Median NaN NaN NaN 0 0 Median 22428000 11257000 11170000 0 0 0 0 0 0 17003000 8581600 8421400 0 0 0 5424500 2675600 2748900 0 0 0 18499 2736 19281 96386;96387;96388 98039;98040;98041;98042;98043 98041 5 KVQTEVLQK SEKAKQLRALRKYGKKVQTEVLQKRQQEKA LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K K V Q K R 0 0 0 0 0 2 1 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 9 1 1071.6288 H7C2Q8;Q99848 H7C2Q8 234 242 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.0046874 66.073 By matching By matching By MS/MS By matching 1 1 2 2 1.2729 1.2455 20.889 6 Median NaN NaN NaN 0 0 Median 1.3777 1.2529 NaN 1 0 Median 1.1327 1.2343 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.158 1.2121 3.0033 2 0 Median 1.8904 1.6272 33.277 2 0 Median 6604400 2938100 3666300 0 0 0 730980 296840 434140 420060 184140 235920 0 0 0 4486700 2114100 2372700 966620 343030 623590 18500 1262 19282 96389;96390;96391;96392;96393;96394 98044;98045 98044 2 KVQTEVLQKR SEKAKQLRALRKYGKKVQTEVLQKRQQEKA RKYGKKVQTEVLQKRQQEKAHMMNAIKKYQ K K V K R Q 0 1 0 0 0 2 1 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 10 2 1227.7299 H7C2Q8;Q99848 H7C2Q8 234 243 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.0092031 34.721 By MS/MS 2 1.0842 1.2519 12.568 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0842 1.2519 12.568 2 0 Median NaN NaN NaN 0 0 Median 1985000 944670 1040300 0 0 0 0 0 0 0 0 0 0 0 0 1985000 944670 1040300 0 0 0 18501 1262 19283 96395;96396 98046;98047 98047 2 KVQYAPERPGPQPTAETTR EEKIHKRNSVRLVIRKVQYAPERPGPQPTA APERPGPQPTAETTRQFLMSDKPLHLEASL R K V T R Q 2 2 0 0 0 2 2 1 0 0 0 1 0 0 4 0 3 0 1 1 0 0 19 2 2125.0916 P49407;E9PM35 P49407 170 188 ARRB1 Beta-arrestin-1 yes no 3;4 5.4081E-05 39.849 By MS/MS By matching By MS/MS By MS/MS 1 1 2 4 0.53946 0.60003 21.684 8 Median 0.39648 0.44126 NaN 1 0 Median 0.55611 0.66697 NaN 1 0 Median 0.48896 0.57225 9.6021 2 0 Median 0.59886 0.62948 26.459 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20067000 13415000 6651900 4186300 2861800 1324500 1563500 963690 599840 9655400 6719100 2936300 4661400 2870200 1791200 0 0 0 0 0 0 18502 2381 19284 96397;96398;96399;96400;96401;96402;96403;96404 98048;98049;98050;98051;98052;98053 98052 6 KVSMGKPDPLR VPPGLVGYVMVTEEKKVSMGKPDPLRDSGT TEEKKVSMGKPDPLRDSGTDDQEEEPLERD K K V L R D 0 1 0 1 0 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 11 2 1226.6805 E9PN81;Q8TDP1 E9PN81 90 100 RNASEH2C Ribonuclease H2 subunit C yes no 3 0.020222 25.474 By matching By MS/MS By matching By matching 1 1 1 1 0.78106 0.84734 22.066 4 Median 0.80462 0.8458 NaN 1 0 Median 0.92717 0.9487 NaN 1 0 Median 0.75818 0.84888 NaN 1 0 Median 0.6951 0.57335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2970700 1660700 1310000 799080 474010 325070 761020 372260 388770 1101100 675410 425730 309410 139020 170390 0 0 0 0 0 0 18503 972 19285 96405;96406;96407;96408 98054 98054 1 KVSQEILELLNTTTAK ESLLNQQSTKEQQSKKVSQEILELLNTTTA VSQEILELLNTTTAKEQSIVEKFRSRGRAQ K K V A K E 1 0 1 0 0 1 2 0 0 1 3 2 0 0 0 1 3 0 0 1 0 0 16 1 1787.004 Q86U44;H0YFV6 Q86U44 241 256 METTL3 N6-adenosine-methyltransferase 70 kDa subunit yes no 3 0.012511 21.841 By MS/MS By matching 1 1 1.0725 1.1002 18.519 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84691 0.96518 NaN 1 0 Median 1.3583 1.2542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2218500 1135000 1083600 0 0 0 0 0 0 2082300 1076200 1006100 136280 58808 77473 0 0 0 0 0 0 18504 3271 19286 96409;96410 98055 98055 1 KVSQPIEGHAASFAQFK QNRVVGAMQLYSVDRKVSQPIEGHAASFAQ SQPIEGHAASFAQFKMEGNAEESTLFCFAV R K V F K M 3 0 0 0 0 2 1 1 1 1 0 2 0 2 1 2 0 0 0 1 0 0 17 1 1843.9581 A0A087WVQ6;Q00610 A0A087WVQ6 193 209 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3;4 8.425E-15 166.9 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 1.0054 0.94706 23.249 11 Median 1.0054 0.94706 4.59 3 0 Median 0.9559 0.91082 23.889 4 0 Median 0.90498 1.0442 15.642 2 1 Median 0.93969 0.90353 55.399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 278860000 140850000 138010000 172400000 84508000 87895000 73627000 38096000 35532000 20919000 10997000 9922100 11909000 7249900 4658600 0 0 0 0 0 0 18505 44 19287 96411;96412;96413;96414;96415;96416;96417;96418;96419;96420;96421 98056;98057;98058;98059;98060;98061;98062;98063;98064;98065;98066;98067;98068;98069;98070 98059 15 KVSQWWER VYKLTQRQVNITVQKKVSQWWERLTKQEKR VNITVQKKVSQWWERLTKQEKRPLFLAPDF K K V E R L 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 2 0 1 0 0 8 1 1117.5669 Q9P035;H3BS72;H3BPZ1 Q9P035 85 92 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.0055714 84.568 By MS/MS By MS/MS By MS/MS 1 1 1 0.94538 1.0973 63.278 3 Median 1.1744 1.233 NaN 1 0 Median 0.42658 0.39054 NaN 1 1 Median 0.94538 1.0973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105890000 61878000 44009000 29527000 12794000 16733000 57889000 39903000 17986000 18471000 9181300 9290000 0 0 0 0 0 0 0 0 0 18506 4200 19288 96422;96423;96424 98071;98072;98073;98074 98071 4 KVTEDALIR GPGTCTFDHRHLYTKKVTEDALIRTVSYNI RHLYTKKVTEDALIRTVSYNILADTYAQTE K K V I R T 1 1 0 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 1 1043.5975 F6T1Q0;Q6L8Q7 F6T1Q0 288 296 PDE12 2,5-phosphodiesterase 12 yes no 2 0.013008 49.418 By MS/MS By MS/MS 1 1 1.1341 1.087 10.602 2 Median 1.0038 1.0085 NaN 1 0 Median 1.2813 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10104000 4759400 5344500 4802800 2606700 2196100 5301100 2152700 3148400 0 0 0 0 0 0 0 0 0 0 0 0 18507 1050 19289 96425;96426 98075;98076 98075 2 KVTEELLTDNR TLNFKMGNRHKFTGKKVTEELLTDNRYLLL FTGKKVTEELLTDNRYLLLVLMDAERAWSY K K V N R Y 0 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 11 1 1316.6936 Q9UHB9 Q9UHB9 112 122 SRP68 Signal recognition particle subunit SRP68 yes yes 2;3 0.00099798 64.297 By matching By MS/MS By matching By MS/MS By matching 2 1 1 2 1 0.75564 0.77426 133.06 7 Median 3.5571 3.6935 220.96 2 0 Median 1.0236 0.94025 NaN 1 0 Median 0.40514 0.46811 NaN 1 0 Median 0.91744 0.8412 42.22 2 0 Median NaN NaN NaN 0 0 Median 0.33282 0.29212 NaN 1 0 Median 18101000 7531200 10570000 8267900 1895700 6372200 1936800 882040 1054800 1950200 1417200 533030 4326000 2155900 2170100 0 0 0 1620200 1180400 439730 18508 4274 19290 96427;96428;96429;96430;96431;96432;96433 98077;98078;98079;98080 98078 3 KVTFGLNR PGPAVQLNKTPSSSKKVTFGLNRNMTAEFK KTPSSSKKVTFGLNRNMTAEFKKTDKSILV K K V N R N 0 1 1 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 933.5396 Q14684 Q14684 683 690 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.05232 37.558 By MS/MS 1 1.0744 1.2198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0744 1.2198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4822200 2473100 2349100 0 0 0 0 0 0 4822200 2473100 2349100 0 0 0 0 0 0 0 0 0 18509 2890 19291 96434 98081 98081 1 KVTFQGVGDEEDEDEIIVPK ______________________________ GVGDEEDEDEIIVPKKKLVDPVAGSGGPGS R K V P K K 0 0 0 3 0 1 4 2 0 2 0 2 0 1 1 0 1 0 0 3 0 0 20 1 2246.0954 O95400 O95400 5 24 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 3 0.00040888 29.384 By MS/MS 1 0.74565 0.78054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74565 0.78054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8173500 4673300 3500200 0 0 0 0 0 0 8173500 4673300 3500200 0 0 0 0 0 0 0 0 0 18510 1771 19292 96435 98082;98083 98083 2 KVTGTLDANR PIIVFRGEHGFIGCRKVTGTLDANRSSYDV FIGCRKVTGTLDANRSSYDVFQLEFNDGAY R K V N R S 1 1 1 1 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 10 1 1073.5829 Q16658;C9JFC0;A0A0A0MSB2 Q16658 399 408 FSCN1 Fascin yes no 2 0.064399 29.473 By matching By MS/MS By matching 2 2 1 1.0317 1.0475 4.0843 5 Median 1.0311 1.0443 0.73082 2 0 Median 1.0977 1.0116 7.2944 2 0 Median 0.95116 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7399100 3362000 4037100 2564800 1148300 1416600 4510600 2045100 2465600 323590 168600 154990 0 0 0 0 0 0 0 0 0 18511 2993 19293 96436;96437;96438;96439;96440 98084 98084 1 KVTHAVVTVPAYFNDAQR VLTKMKETAEAYLGKKVTHAVVTVPAYFND HAVVTVPAYFNDAQRQATKDAGTIAGLNVM K K V Q R Q 3 1 1 1 0 1 0 0 1 0 0 1 0 1 1 0 2 0 1 4 0 0 18 1 2015.0589 P11021 P11021 164 181 HSPA5 78 kDa glucose-regulated protein yes yes 3;4 3.0062E-07 84.035 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 2 1 1.0696 1.0555 13.573 9 Median 1.0466 1.0767 17.468 3 0 Median 1.0771 0.98496 9.7862 2 1 Median 1.0696 1.1348 NaN 1 0 Median 1.0007 0.93998 20.339 2 0 Median NaN NaN NaN 0 0 Median 1.0936 0.96601 NaN 1 0 Median 61973000 30691000 31282000 44772000 22305000 22468000 10629000 5312300 5316500 4800300 2239900 2560400 1462600 669690 792950 0 0 0 309320 164760 144570 18512 1948 19294 96441;96442;96443;96444;96445;96446;96447;96448;96449 98085;98086;98087;98088;98089;98090;98091;98092 98086 7 KVTLGDTLTR SVEVALPPPAEHEVKKVTLGDTLTRRSISQ EHEVKKVTLGDTLTRRSISQQKSGVSITID K K V T R R 0 1 0 1 0 0 0 1 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 1 1102.6346 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 912 921 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.0054008 55.461 By MS/MS By MS/MS 2 2 1.1021 1.2192 14.389 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0968 1.226 7.5371 2 0 Median 1.2271 1.1009 21.179 2 0 Median 33729000 15732000 17998000 0 0 0 0 0 0 0 0 0 0 0 0 23961000 11244000 12717000 9768500 4487700 5280800 18513 4560 19295 96450;96451;96452;96453 98093;98094;98095;98096;98097 98093 5 KVTLGDTLTRR SVEVALPPPAEHEVKKVTLGDTLTRRSISQ HEVKKVTLGDTLTRRSISQQKSGVSITIDD K K V R R S 0 2 0 1 0 0 0 1 0 0 2 1 0 0 0 0 3 0 0 1 0 0 11 2 1258.7357 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 912 922 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 0.0019612 45.077 By MS/MS By MS/MS 2 3 1.0404 1.1435 14.63 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.035 1.1728 3.3201 2 0 Median 1.0404 0.97126 15.091 3 0 Median 16126000 7686600 8439400 0 0 0 0 0 0 0 0 0 0 0 0 11166000 5481700 5684400 4959800 2204800 2755000 18514 4560 19296 96454;96455;96456;96457;96458 98098;98099;98100;98101 98098 4 KVTLGTQPTVLR YFGLNIETGLLSDRKKVTLGTQPTVLRTFR DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K K V L R T 0 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 3 0 0 2 0 0 12 1 1311.7874 Q16531;F5GY55 Q16531 628 639 DDB1 DNA damage-binding protein 1 yes no 2 0.0013766 58.676 By MS/MS 1 0.49876 0.56484 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49876 0.56484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4581600 2828700 1752900 0 0 0 0 0 0 4581600 2828700 1752900 0 0 0 0 0 0 0 0 0 18515 2985 19297 96459 98102 98102 1 KVTLSVLSR ______________________________ ______________________________ K K V S R E 0 1 0 0 0 0 0 0 0 0 2 1 0 0 0 2 1 0 0 2 0 0 9 1 1001.6233 O00625 O00625 6 14 PIR Pirin yes yes 2 0.0069306 65.305 By MS/MS By MS/MS 2 1 1.2025 1.1379 12.292 2 Median 1.0375 1.0432 NaN 1 1 Median 1.3938 1.2412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23880000 10319000 13561000 13438000 6358000 7079900 10442000 3960500 6481600 0 0 0 0 0 0 0 0 0 0 0 0 18516 1474 19298 96460;96461;96462 98103;98104;98105;98106 98105 4 KVTQLDLDGPK LIDIENPNRVAQTTKKVTQLDLDGPKELSR QTTKKVTQLDLDGPKELSRREREEIEKQKA K K V P K E 0 0 0 2 0 1 0 1 0 0 2 2 0 0 1 0 1 0 0 1 0 0 11 1 1212.6714 Q13442 Q13442 95 105 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2;3 0.00020994 100.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.0039 0.95192 7.2862 8 Median 1.0039 1.0206 0.9796 2 0 Median 1.1044 1.0111 8.2004 2 0 Median 0.89897 0.90121 1.8778 2 0 Median 1.011 0.91055 5.9524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48814000 24005000 24809000 24018000 11937000 12081000 4308300 1931100 2377200 10573000 5359800 5213000 9915500 4777000 5138500 0 0 0 0 0 0 18517 2818 19299 96463;96464;96465;96466;96467;96468;96469;96470 98107;98108;98109;98110;98111;98112;98113;98114;98115 98115 9 KVTSVVFHPSQDLVFSASPDATIR KSSEQILATLKGHTKKVTSVVFHPSQDLVF SQDLVFSASPDATIRIWSVPNASCVQVVRA K K V I R I 2 1 0 2 0 1 0 0 1 1 1 1 0 2 2 4 2 0 0 4 0 0 24 1 2600.3599 Q9UMS4 Q9UMS4 266 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 3;4 1.5492E-18 81.888 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 6 1 3 1 0.82357 0.84529 18.084 13 Median 0.89249 0.88815 NaN 1 0 Median 0.84511 0.76894 NaN 1 0 Median 0.58705 0.65971 17.401 6 0 Median 0.905 0.84924 NaN 1 0 Median 0.85879 0.88065 8.8984 3 0 Median 1.0036 0.92484 NaN 1 0 Median 177010000 96507000 80507000 24038000 11778000 12260000 394720 197510 197210 126850000 71356000 55499000 6880100 3498800 3381300 18499000 9501000 8998300 348140 176220 171920 18518 4334 19300 96471;96472;96473;96474;96475;96476;96477;96478;96479;96480;96481;96482;96483 98116;98117;98118;98119;98120;98121;98122;98123;98124;98125;98126;98127 98119 12 KVVAEVYDQER HKAIQALNGRWFAGRKVVAEVYDQERFDNS FAGRKVVAEVYDQERFDNSDLSA_______ R K V E R F 1 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 11 1 1334.683 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 516 526 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 3.6195E-05 111.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 7 6 5 0.94732 0.9135 27.83 21 Median 0.84005 0.84817 4.1548 2 1 Median 0.94607 0.86385 12.685 2 0 Median 0.94732 0.98933 17.626 7 2 Median 1.0302 0.96671 37.08 6 0 Median NaN NaN NaN 0 0 Median 0.72221 0.65617 37.617 4 0 Median 98527000 48802000 49724000 6384300 3021800 3362500 15353000 7703900 7649000 44623000 22547000 22077000 26499000 12822000 13677000 0 0 0 5666700 2707600 2959100 18519 284 19301 96484;96485;96486;96487;96488;96489;96490;96491;96492;96493;96494;96495;96496;96497;96498;96499;96500;96501;96502;96503;96504;96505 98128;98129;98130;98131;98132;98133;98134;98135;98136;98137;98138;98139;98140;98141;98142;98143;98144;98145;98146;98147;98148;98149;98150 98134 22 KVVDNTTAKEFADSLGIPFLETSAK VNKLLVGNKSDLTTKKVVDNTTAKEFADSL FADSLGIPFLETSAKNATNVEQAFMTMAAE K K V A K N 3 0 1 2 0 0 2 1 0 1 2 3 0 2 1 2 3 0 0 2 0 0 25 2 2680.396 Q9H0U4;E9PLD0;Q92928 Q9H0U4 129 153 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 3;4 6.7628E-05 31.819 By MS/MS By MS/MS 2 2 0.87673 0.97922 18.953 4 Median 0.87673 0.97922 4.3986 2 0 Median 0.98588 0.96474 32.498 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8132000 3651900 4480100 6181600 2770900 3410700 1950400 881040 1069400 0 0 0 0 0 0 0 0 0 0 0 0 18520 3929 19302 96506;96507;96508;96509 98151;98152 98151 2 KVVDPFSK KNKRLTKGGKKGAKKKVVDPFSKKDWYDVK GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR K K V S K K 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 0 8 1 918.51747 P61247;E9PFI5;H0Y9Y4;H0Y8L7;D6RI02 P61247 20 27 RPS3A 40S ribosomal protein S3a yes no 2 0.020332 51.346 By MS/MS By MS/MS 1 1 0.83166 0.77911 6.4986 2 Median 0.76378 0.74412 NaN 1 0 Median 0.90556 0.81574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11671000 5804100 5867000 7404000 3789100 3614800 4267100 2015000 2252200 0 0 0 0 0 0 0 0 0 0 0 0 18521 2553 19303 96510;96511 98153;98154 98153 2 KVVDYSQFQESDDADEDYGR ______________________________ SQFQESDDADEDYGRDSGPPTKKIRSSPRE R K V G R D 1 1 0 5 0 2 2 1 0 0 0 1 0 1 0 2 0 0 2 2 0 0 20 1 2364.9982 Q9H1E3 Q9H1E3 9 28 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 3 5.5755E-26 174.65 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.93587 0.90682 36.425 4 Median 0.60734 0.65065 NaN 1 1 Median 1.6023 1.4975 NaN 1 0 Median 0.72375 0.78257 NaN 1 0 Median 1.2102 1.0508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45132000 23571000 21561000 4925500 3035000 1890500 170280 63036 107240 33000000 17489000 15511000 7036000 2984200 4051800 0 0 0 0 0 0 18522 3935 19304 96512;96513;96514;96515 98155;98156;98157;98158 98156 4 KVVDYTTAK VNKLLVGNKCDLTTKKVVDYTTAKEFADSL CDLTTKKVVDYTTAKEFADSLGIPFLETSA K K V A K E 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 2 0 1 2 0 0 9 1 1023.5601 E7END7;P62820 E7END7 100 108 RAB1A Ras-related protein Rab-1A yes no 2 0.027396 40.002 By MS/MS By matching By matching 1 1 1 1.1104 1.1305 3.3957 3 Median 1.1104 1.1305 NaN 1 0 Median 1.2773 1.1733 NaN 1 0 Median 1.0681 1.0964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2536300 1113400 1422900 1645800 711020 934740 518800 226840 291960 371740 175550 196180 0 0 0 0 0 0 0 0 0 18523 863 19305 96516;96517;96518 98159 98159 1 KVVENEIYSESHR GVFSMGNNSYGQCGRKVVENEIYSESHRVH GRKVVENEIYSESHRVHRMQ__________ R K V H R V 0 1 1 0 0 0 3 0 1 1 0 1 0 0 0 2 0 0 1 2 0 0 13 1 1588.7845 A0A087WT38;Q96I51 A0A087WT38 136 148 WBSCR16 Williams-Beuren syndrome chromosomal region 16 protein yes no 3 4.2499E-05 82.202 By matching By matching By MS/MS By MS/MS 1 2 2 1 1.2781 1.343 24.662 6 Median 1.2903 1.3088 NaN 1 0 Median 1.8802 1.7333 32.419 2 0 Median 1.1242 1.2064 19.931 2 0 Median 1.2661 1.2141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9825500 4481200 5344300 1412200 722090 690120 1165200 478220 686980 2562800 1193800 1369000 4685300 2087100 2598200 0 0 0 0 0 0 18524 14 19306 96519;96520;96521;96522;96523;96524 98160;98161;98162;98163 98162 4 KVVGCSCVVVK EWVGLCKIDREGKPRKVVGCSCVVVKDYGK GKPRKVVGCSCVVVKDYGKESQAKDVIEEY R K V V K D 0 0 0 0 2 0 0 1 0 0 0 2 0 0 0 1 0 0 0 5 0 0 11 1 1233.6573 P25398 P25398 102 112 RPS12 40S ribosomal protein S12 yes yes 2;3 0.00035763 73.499 By matching By MS/MS By matching 2 2 1 1.1632 1.015 7.0773 5 Median 1.0959 1.0263 1.5636 2 0 Median 1.2023 1.0422 4.673 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2474 0.89254 NaN 1 0 Median NaN NaN NaN 0 0 Median 21637000 9037500 12599000 1142300 486050 656260 20380000 8506300 11873000 0 0 0 0 0 0 115080 45194 69887 0 0 0 18525 2132 19307 96525;96526;96527;96528;96529 98164;98165;98166 98165 3 KVVGCSCVVVKDYGK EWVGLCKIDREGKPRKVVGCSCVVVKDYGK KVVGCSCVVVKDYGKESQAKDVIEEYFKCK R K V G K E 0 0 0 1 2 0 0 2 0 0 0 3 0 0 0 1 0 0 1 5 0 0 15 2 1696.864 P25398 P25398 102 116 RPS12 40S ribosomal protein S12 yes yes 3 9.7797E-10 99.747 By matching By MS/MS 1 1 0.66336 0.6317 61.018 2 Median 0.361 0.41033 NaN 1 0 Median 1.219 0.97251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4877400 2808800 2068700 1888500 1442300 446200 2988900 1366400 1622500 0 0 0 0 0 0 0 0 0 0 0 0 18526 2132 19308 96530;96531 98167;98168 98167 2 KVVGDVAYDEAK CGINYVPDDKKPNGRKVVGDVAYDEAKERA NGRKVVGDVAYDEAKERASFITPVPGGVGP R K V A K E 2 0 0 2 0 0 1 1 0 0 0 2 0 0 0 0 0 0 1 3 0 0 12 1 1292.6612 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 251 262 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 5.7981E-06 120.96 By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1.2732 1.2046 18.672 6 Median 0.8962 0.94549 NaN 1 0 Median 1.2749 1.2307 7.6706 3 0 Median 1.3963 1.5957 NaN 1 0 Median 1.0996 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33434000 14383000 19052000 3219400 1650200 1569200 27758000 11636000 16122000 996440 419750 576680 1460700 676530 784150 0 0 0 0 0 0 18527 1968 19309 96532;96533;96534;96535;96536;96537 98169;98170;98171;98172;98173;98174;98175;98176 98170 8 KVVGDVAYDEAKER CGINYVPDDKKPNGRKVVGDVAYDEAKERA RKVVGDVAYDEAKERASFITPVPGGVGPMT R K V E R A 2 1 0 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 1 3 0 0 14 2 1577.8049 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 251 264 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 2.2638E-06 119.45 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.86772 0.98629 23.506 5 Median 0.90272 1.0261 5.592 2 0 Median 1.4131 1.4 NaN 1 0 Median 0.77961 0.97122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77908 0.72571 NaN 1 0 Median 37014000 17316000 19698000 28454000 13652000 14802000 5158400 1879500 3278800 2109000 1088300 1020800 0 0 0 0 0 0 1292500 696300 596230 18528 1968 19310 96538;96539;96540;96541;96542 98177;98178;98179;98180;98181 98179 5 KVVLLTGETSTDLK VYMDWYEKFQDRLNKKVVLLTGETSTDLKL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K K V L K L 0 0 0 1 0 0 1 1 0 0 3 2 0 0 0 1 3 0 0 2 0 0 14 1 1502.8556 O75643 O75643 1404 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 6.5645E-05 74.678 By matching By MS/MS By MS/MS By matching 2 2 2 1 1.2547 1.1871 22.278 7 Median NaN NaN NaN 0 0 Median 1.3276 1.2895 11.702 2 0 Median 0.86075 0.99515 2.8804 2 0 Median 1.2659 1.1865 0.82222 2 0 Median 1.7909 1.8943 NaN 1 0 Median NaN NaN NaN 0 0 Median 27218000 13175000 14043000 0 0 0 3456400 1184500 2271900 17188000 9258000 7930500 4490300 2013400 2476900 2082700 718890 1363800 0 0 0 18529 1688 19311 96543;96544;96545;96546;96547;96548;96549 98182;98183;98184;98185 98185 3 KVVNPLFEK KVAPAPAVVKKQEAKKVVNPLFEKRPKNFG KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K K V E K R 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 9 1 1072.6281 P62424;Q5T8U3 P62424 26 34 RPL7A 60S ribosomal protein L7a yes no 2 0.00017726 145.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 3 4 1.0013 0.93702 16.041 16 Median 0.92231 0.88468 17.082 3 0 Median 0.977 0.89518 4.9438 3 0 Median 0.96707 1.006 NaN 1 0 Median 1.0263 0.91198 0.9018 2 0 Median 1.0045 1.0879 7.0503 3 0 Median 1.1291 0.96494 27.242 4 1 Median 724670000 362650000 362010000 218360000 114220000 104140000 136560000 71293000 65268000 40708000 18885000 21823000 45320000 23303000 22017000 161170000 79375000 81795000 122550000 55579000 66969000 18530 2589 19312 96550;96551;96552;96553;96554;96555;96556;96557;96558;96559;96560;96561;96562;96563;96564;96565 98186;98187;98188;98189;98190;98191;98192;98193;98194;98195;98196;98197;98198;98199;98200;98201;98202;98203;98204;98205;98206;98207;98208;98209;98210 98193 25 KVVQLDVR LPHIENGGVAVLTGKKVVQLDVRDNMVKLN VAVLTGKKVVQLDVRDNMVKLNDGSQITYE K K V V R D 0 1 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 8 1 955.58147 O95831 O95831 232 239 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.0049516 93.429 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1 1.2319 1.3602 17.675 7 Median 1.0973 1.1004 NaN 1 0 Median 1.5028 1.3675 NaN 1 0 Median 1.0752 1.1649 21.917 2 0 Median 1.8032 1.6533 NaN 1 0 Median 1.2221 1.2668 NaN 1 0 Median 1.6662 1.5312 NaN 1 0 Median 33990000 15026000 18964000 12751000 6453400 6297700 15954000 6408900 9545600 2316900 1085100 1231700 1214200 402720 811440 1151500 478140 673360 601700 197580 404120 18531 1797 19313 96566;96567;96568;96569;96570;96571;96572 98211;98212;98213;98214;98215 98214 5 KVVQSLEQTAR AFWEAEAARSPEEIRKVVQSLEQTAREILT EEIRKVVQSLEQTAREILTLLQGVHQGAGF R K V A R E 1 1 0 0 0 2 1 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 11 1 1257.7041 E9PGT1;Q15631;H7C1D4;A0A0J9YVW2 E9PGT1 21 31 TSN Translin yes no 2;3 3.3439E-05 87.568 By MS/MS By MS/MS 2 2 1.2671 1.2166 8.0468 4 Median 1.2341 1.2927 9.3798 2 0 Median 1.2671 1.1811 4.983 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18487000 8293500 10194000 12835000 5751200 7083900 5651900 2542300 3109600 0 0 0 0 0 0 0 0 0 0 0 0 18532 925 19314 96573;96574;96575;96576 98216;98217;98218;98219;98220;98221 98220 6 KVVVVVPNEEDWK SGQRRKLLLFKTFSRKVVVVVPNEEDWKKR SRKVVVVVPNEEDWKKRLELRKEVEGDDVP R K V W K K 0 0 1 1 0 0 2 0 0 0 0 2 0 0 1 0 0 1 0 5 0 0 13 1 1539.8297 Q1KMD3;H3BQZ7 Q1KMD3 558 570 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2;3 8.0067E-07 166.86 By matching By MS/MS By matching 2 2 2 0.81135 0.83493 8.6579 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89774 0.86602 4.9007 2 0 Median 0.75475 0.84497 1.9596 2 0 Median 0.83145 0.75273 11.08 2 0 Median 26769000 14639000 12130000 0 0 0 0 0 0 0 0 0 848070 424200 423860 24242000 13303000 10940000 1678700 912320 766370 18533 3002 19315 96577;96578;96579;96580;96581;96582 98222;98223;98224;98225 98225 4 KVVVVVPNEEDWKK SGQRRKLLLFKTFSRKVVVVVPNEEDWKKR RKVVVVVPNEEDWKKRLELRKEVEGDDVPE R K V K K R 0 0 1 1 0 0 2 0 0 0 0 3 0 0 1 0 0 1 0 5 0 0 14 2 1667.9247 Q1KMD3;H3BQZ7 Q1KMD3 558 571 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2;3 6.8139E-07 96.734 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 2 0.725 0.78487 18.917 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64472 0.78646 NaN 1 0 Median 0.75193 0.78372 12.942 2 0 Median 0.73464 0.81271 20.608 5 0 Plateau 0.85982 0.88701 28.061 2 0 Median 114270000 64462000 49803000 0 0 0 0 0 0 6039900 3596400 2443500 4438800 2725100 1713700 96850000 54902000 41948000 6936500 3239000 3697500 18534 3002 19316 96583;96584;96585;96586;96587;96588;96589;96590;96591;96592 98226;98227;98228;98229;98230;98231;98232;98233;98234;98235;98236;98237 98228 12 KVVVYLQK SPLARSARLPGPQEKKVVVYLQKLDTAYDD LPGPQEKKVVVYLQKLDTAYDDLGNSGHFT K K V Q K L 0 0 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 1 3 0 0 8 1 975.6117 H0YCY8;P53634 H0YCY8 20 27 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes no 2 0.011185 65.252 By MS/MS By matching 2 2 1.3191 1.2391 29.636 4 Median 0.97362 0.95054 13.135 2 0 Median 1.7436 1.5523 7.5196 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17241000 7337400 9903300 8563100 4308100 4255100 8677700 3029400 5648300 0 0 0 0 0 0 0 0 0 0 0 0 18535 1173 19317 96593;96594;96595;96596 98238;98239;98240 98239 3 KVVYENAYGQFIGPHR IGSLNWGYRVALREKKVVYENAYGQFIGPH VVYENAYGQFIGPHRIKATNNKGKEKIYSA K K V H R I 1 1 1 0 0 1 1 2 1 1 0 1 0 1 1 0 0 0 2 2 0 0 16 1 1876.9584 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3 E9PIR7 124 139 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 3 8.201E-08 96.414 By MS/MS By matching By matching 1 1 1 1.3787 1.3727 26.667 3 Plateau 1.3787 1.3727 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2895 1.4394 NaN 1 0 Median 0.94561 0.88734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23985000 10369000 13617000 19156000 8170300 10986000 0 0 0 3598500 1534900 2063600 1230700 663550 567190 0 0 0 0 0 0 18536 11 19318 96597;96598;96599 98241;98242 98241 2 KVWDQVK KPPDKPLMPYMRYSRKVWDQVKASNPDLKL MPYMRYSRKVWDQVKASNPDLKLWEIGKII R K V V K A 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 2 0 0 7 1 901.50215 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85;J3QKX6;A0A2R8YFC8;A0A2R8YEB8 Q969G3 79 85 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2 0.063267 42.869 By MS/MS 1 0.8709 0.91437 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8709 0.91437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4787400 2360000 2427500 0 0 0 0 0 0 4787400 2360000 2427500 0 0 0 0 0 0 0 0 0 18537 389 19319 96600 98243 98243 1 KVWLDPNETNEIANANSR LQKRLASSVLRCGKKKVWLDPNETNEIANA LDPNETNEIANANSRQQIRKLIKDGLIIRK K K V S R Q 2 1 4 1 0 0 2 0 0 1 1 1 0 0 1 1 1 1 0 1 0 0 18 1 2070.013 J3QR09;J3KTE4;P84098 J3QR09 18 35 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 3 1.2894E-14 152.71 By MS/MS By MS/MS By MS/MS 1 1 1 0.9399 0.85619 7.9998 3 Plateau 0.9399 0.97699 NaN 1 0 Median 0.9138 0.84569 NaN 1 0 Median 0.82414 0.85619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64446000 26928000 37518000 50186000 20471000 29715000 8008300 3626500 4381800 6251800 2830500 3421300 0 0 0 0 0 0 0 0 0 18538 1335 19320 96601;96602;96603 98244;98245;98246;98247;98248 98244 5 KVYENYPTYDLTER ASANLEEVTMKQICKKVYENYPTYDLTERK KKVYENYPTYDLTERKDFIKTTVKEVNISV K K V E R K 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 349 362 DEK Protein DEK yes no 2;3 2.1304E-11 127.56 By MS/MS By MS/MS By matching 5 3 1 0.98204 0.93908 66.41 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79486 0.81068 86.072 5 1 Median 1.0252 0.96199 3.1606 3 0 Median 1.1211 1.1552 NaN 1 0 Median NaN NaN NaN 0 0 Median 254060000 135180000 118870000 0 0 0 0 0 0 189770000 105220000 84545000 58509000 27142000 31366000 5780500 2819700 2960800 0 0 0 18539 1166 19321 96604;96605;96606;96607;96608;96609;96610;96611;96612 98249;98250;98251;98252;98253;98254;98255;98256 98251 8 KVYENYPTYDLTERK ASANLEEVTMKQICKKVYENYPTYDLTERK KVYENYPTYDLTERKDFIKTTVKEVNISVF K K V R K D 0 1 1 1 0 0 2 0 0 0 1 2 0 0 1 0 2 0 3 1 0 0 15 2 1917.9472 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 349 363 DEK Protein DEK yes no 3 1.6862E-05 79.652 By MS/MS 1 2.1829 2.3831 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1829 2.3831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21367000 7082100 14285000 0 0 0 0 0 0 0 0 0 21367000 7082100 14285000 0 0 0 0 0 0 18540 1166 19322 96613 98257 98257 1 KVYFHTDAAQAVGK VKQPIAEIGRICSSRKVYFHTDAAQAVGKI RKVYFHTDAAQAVGKIPLDVNDMKIDLMSI R K V G K I 3 0 0 1 0 1 0 1 1 0 0 2 0 1 0 0 1 0 1 2 0 0 14 1 1533.794 Q9Y697;F2Z2E7 Q9Y697 226 239 NFS1 Cysteine desulfurase, mitochondrial yes no 3 0.00038534 47.621 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 0.97469 0.82668 21.605 6 Plateau 0.81907 0.77632 30.546 2 0 Median 0.80346 0.72694 NaN 1 0 Median 0.72915 0.77954 31.949 2 0 Median 0.98977 0.9401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29547000 13837000 15710000 8134700 3714000 4420700 3358900 1437600 1921300 7719300 3810000 3909200 10334000 4875400 5459000 0 0 0 0 0 0 18541 4484 19323 96614;96615;96616;96617;96618;96619 98258;98259;98260;98261;98262 98262 5 KVYSFLDK LQLLRALVSGKSTAKKVYSFLDKMSFYNEL SGKSTAKKVYSFLDKMSFYNELYKHKPHDV K K V D K M 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 1 0 0 1 1 0 0 8 1 998.54368 Q5SRE5 Q5SRE5 463 470 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.048804 38.086 By MS/MS By matching 2 1 0.65519 0.74954 25.32 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69162 0.79538 8.3951 2 0 Median 0.55364 0.51931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11730000 6860700 4868900 0 0 0 0 0 0 9514900 5578400 3936600 2214700 1282400 932330 0 0 0 0 0 0 18542 3074 19324 96620;96621;96622 98263 98263 1 KWDLSELPK PPKKFGNPGERLRKKKWDLSELPKFEKNFY ERLRKKKWDLSELPKFEKNFYVEHPEVARL K K W P K F 0 0 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 0 9 1 1114.6023 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 121 129 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.024531 41.876 By MS/MS By matching By matching 1 1 2 1.1228 1.0368 107.75 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84622 0.93188 NaN 1 0 Median 1.1228 1.0368 NaN 1 0 Median NaN NaN NaN 0 0 Median 5.9908 6.339 NaN 1 0 Median 32899000 17602000 15296000 0 0 0 0 0 0 29918000 16422000 13497000 794910 389630 405270 0 0 0 2185700 791110 1394600 18543 343 19325 96623;96624;96625;96626 98264;98265 98265 2 KWEAAHEAEQLR RSWTAADMAAQITKRKWEAAHEAEQLRAYL TKRKWEAAHEAEQLRAYLDGTCVEWLRRYL R K W L R A 3 1 0 0 0 1 3 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 12 1 1466.7266 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24 P04439 170 181 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain yes no 3 0.0072058 28.283 By MS/MS 1 1.5425 1.4442 NaN 1 Median NaN NaN NaN 0 0 Median 1.5425 1.4442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2348100 894700 1453400 0 0 0 2348100 894700 1453400 0 0 0 0 0 0 0 0 0 0 0 0 18544 348 19326 96627 98266;98267 98267 2 KWESPAQNTAHLDQFER SVKEFLAKAKEDFLKKWESPAQNTAHLDQF ESPAQNTAHLDQFERIKTLGTGSFGRVMLV K K W E R I 2 1 1 1 0 2 2 0 1 0 1 1 0 1 1 1 1 1 0 0 0 0 17 1 2055.9763 P17612;Q15136 P17612 30 46 PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit alpha yes no 3 7.8465E-06 51.193 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.75752 0.78947 21.309 4 Median 0.6768 0.72513 NaN 1 0 Median 0.63003 0.59098 NaN 1 0 Median 0.84787 0.96408 NaN 1 0 Median 0.9885 0.85951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22940000 11874000 11066000 7152500 3855900 3296600 3409700 2112300 1297400 6763700 3224800 3538900 5614400 2681400 2933000 0 0 0 0 0 0 18545 2044 19327 96628;96629;96630;96631 98268;98269;98270 98269 3 KWGVPIEK KLNYLDPRITVAWCKKWGVPIEKIYNKTQR ITVAWCKKWGVPIEKIYNKTQREKFAWAID K K W E K I 0 0 0 0 0 0 1 1 0 1 0 2 0 0 1 0 0 1 0 1 0 0 8 1 955.5491 P11387 P11387 735 742 TOP1 DNA topoisomerase 1 yes yes 2 0.005023 90.37 By MS/MS By MS/MS 1 1 0.91774 0.9697 4.5225 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82179 0.93918 NaN 1 0 Median 1.0249 1.0012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8970500 4664600 4305900 0 0 0 0 0 0 5695000 3152700 2542300 3275500 1511900 1763600 0 0 0 0 0 0 18546 1962 19328 96632;96633 98271;98272;98273;98274 98272 4 KWGYTVK NTGVEAGETACKLARKWGYTVKGIQKYKAK ETACKLARKWGYTVKGIQKYKAKIVFAAGN R K W V K G 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 1 1 0 0 7 1 880.48069 P04181 P04181 155 161 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.045866 51.736 By MS/MS 1 1.4192 1.2797 NaN 1 Median NaN NaN NaN 0 0 Median 1.4192 1.2797 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9012000 4037700 4974300 0 0 0 9012000 4037700 4974300 0 0 0 0 0 0 0 0 0 0 0 0 18547 1846 19329 96634 98275 98275 1 KWNLDELPK SGKKFGNPGEKLVKKKWNLDELPKFEKNFY EKLVKKKWNLDELPKFEKNFYQEHPDLARR K K W P K F 0 0 1 1 0 0 1 0 0 0 2 2 0 0 1 0 0 1 0 0 0 0 9 1 1141.6132 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4;X6RLV5 J3KTA4 45 53 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.010117 52.482 By MS/MS 1 0.91719 1.0289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91719 1.0289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6657300 3185300 3472000 0 0 0 0 0 0 6657300 3185300 3472000 0 0 0 0 0 0 0 0 0 18548 1334 19330 96635 98276 98276 1 KWPQQVVQK KAEATGEKRPRGRPRKWPQQVVQKKPAQVR PRGRPRKWPQQVVQKKPAQVRHSH______ R K W Q K K 0 0 0 0 0 3 0 0 0 0 0 2 0 0 1 0 0 1 0 2 0 0 9 1 1139.6451 F5H2U8;F5H2A4;P52926 F5H2U8 82 90 HMGA2 High mobility group protein HMGI-C yes no 2 0.0062765 60.76 By MS/MS By matching 1 1 0.6883 0.73689 1.1338 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74511 0.74282 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63582 0.731 NaN 1 0 Median NaN NaN NaN 0 0 Median 10229000 5687200 4541900 0 0 0 0 0 0 7861800 4417200 3444600 0 0 0 2367200 1269900 1097300 0 0 0 18549 1025 19331 96636;96637 98277;98278;98279 98278 3 KWQTMIEAHVDVK HGMDLTRDKMCSMVKKWQTMIEAHVDVKTT VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT K K W V K T 1 0 0 1 0 1 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 0 13 1 1583.813 P61247;E9PFI5;D6RG13;D6RAT0;H0Y8L7;D6RB09;D6RAS7;D6RED7 P61247 116 128 RPS3A 40S ribosomal protein S3a yes no 3 0.00022322 62.042 By matching By MS/MS By matching 1 1 1 1.3341 1.1508 10.545 3 Median 1.3341 1.2992 NaN 1 0 Median 1.1696 1.0531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3473 1.1508 NaN 1 0 Median 21676000 9158700 12517000 8068500 2941300 5127200 13006000 5900400 7105400 0 0 0 0 0 0 0 0 0 601660 317040 284620 18550 2553 19332 96638;96639;96640 98280;98281 98281 2 KWVTVGDTSLR FSCLSLLSSWDYREKKWVTVGDTSLRIFKW YREKKWVTVGDTSLRIFKWVPVTDSKEKEK K K W L R I 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 1 0 2 0 0 11 1 1260.6826 F2Z3H6;Q9BQE9;F8WE18;F8WDZ4;Q4VC05 F2Z3H6 45 55 BCL7B;BCL7A B-cell CLL/lymphoma 7 protein family member B;B-cell CLL/lymphoma 7 protein family member A yes no 2;3 0.0034003 52.579 By MS/MS By MS/MS By matching 3 1 1 1.0771 1.0747 33.766 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9892 1.0747 16.873 3 0 Median 1.0771 0.94363 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3233 2.0417 NaN 1 0 Median 15297000 7531100 7766400 0 0 0 0 0 0 13065000 6729100 6335800 1641500 660850 980650 0 0 0 591020 141130 449890 18551 994 19333 96641;96642;96643;96644;96645 98282;98283;98284;98285;98286 98283 5 KWYYNAAGFNK KQAVSASGKWLDGIRKWYYNAAGFNKLGLM DGIRKWYYNAAGFNKLGLMRDDTIYEDEDV R K W N K L 2 0 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 1 2 0 0 0 11 1 1360.6564 P14927;B7Z2R2 P14927 19 29 UQCRB Cytochrome b-c1 complex subunit 7 yes no 2;3 0.00045628 89.698 By MS/MS By MS/MS 2 1 1.409 1.2215 24.126 3 Median 1.1731 1.0986 33.002 2 1 Median 1.409 1.2215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14266000 7156500 7109100 10255000 5367600 4887600 4010500 1788900 2221500 0 0 0 0 0 0 0 0 0 0 0 0 18552 630 19334 96646;96647;96648 98287;98288;98289;98290;98291 98288 5 KYAALYQPLFDK HIEAKFYEEVHDLERKYAALYQPLFDKRRE LERKYAALYQPLFDKRREFITGDVEPTDAE R K Y D K R 2 0 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 2 0 0 0 12 1 1455.7762 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8 Q99733 94 105 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2;3 0.00088626 66.056 By MS/MS By matching By matching 2 1 3 1.0146 1.0065 14.56 6 Median 1.0146 0.97104 4.411 2 0 Median 1.1266 1.0635 NaN 1 0 Median 0.9638 1.0113 21.838 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25553000 12382000 13171000 18420000 8809200 9610500 365440 166770 198680 6767800 3406000 3361800 0 0 0 0 0 0 0 0 0 18553 3766 19335 96649;96650;96651;96652;96653;96654 98292;98293;98294 98292 3 KYAALYQPLFDKR HIEAKFYEEVHDLERKYAALYQPLFDKRRE ERKYAALYQPLFDKRREFITGDVEPTDAES R K Y K R R 2 1 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 2 0 0 0 13 2 1611.8773 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8 Q99733 94 106 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 3 0.034614 51.135 By MS/MS 1 0.56854 0.63529 NaN 1 Median 0.56854 0.63529 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8528800 5469700 3059000 8528800 5469700 3059000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18554 3766 19336 96655 98295 98295 1 KYAELLEEHR NTLSTPEEKLAALCKKYAELLEEHRNSQKQ AALCKKYAELLEEHRNSQKQMKLLQKKQSQ K K Y H R N 1 1 0 0 0 0 3 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 10 1 1286.6619 P40222 P40222 195 204 TXLNA Alpha-taxilin yes yes 3 0.00037205 64.439 By MS/MS By MS/MS 1 2 0.98919 0.90699 10.719 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78362 0.83171 NaN 1 1 Median 1.0356 0.96621 8.945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6808100 3213400 3594800 0 0 0 0 0 0 3858900 1888500 1970400 2949200 1324800 1624400 0 0 0 0 0 0 18555 2284 19337 96656;96657;96658 98296;98297;98298;98299;98300 98297 5 KYAPTEAQLNAVDALIDSMSLAK EDLRQYMFSSLKNSKKYAPTEAQLNAVDAL LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K K Y A K K 5 0 1 2 0 1 1 0 0 1 3 2 1 0 1 2 1 0 1 1 0 0 23 1 2448.257 P13010 P13010 443 465 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.00058249 26.627 By MS/MS By MS/MS 1 2 1.0327 0.99858 6.0884 3 Median 0.94383 0.97259 NaN 1 0 Median 1.0797 1.0444 6.3473 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10830000 4914900 5914800 5459400 2515100 2944300 5370300 2399800 2970500 0 0 0 0 0 0 0 0 0 0 0 0 18556 1986 19338 96659;96660;96661 98301;98302;98303 98302 3 KYASSANLHLPK EDKLNNELLAKFLEKKYASSANLHLPKLSI LEKKYASSANLHLPKLSISETYDLKSVLGD K K Y P K L 2 0 1 0 0 0 0 0 1 0 2 2 0 0 1 2 0 0 1 0 0 0 12 1 1327.7248 CON__P34955 CON__P34955 301 312 yes yes 2;3 0.00024697 84.352 By MS/MS By MS/MS 1 2 0.014078 0.013124 NaN 1 Median 0.014078 0.013124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33129000 32731000 397610 28280000 27882000 397610 4848900 4848900 0 0 0 0 0 0 0 0 0 0 0 0 0 + 18557 763 19339 96662;96663;96664 98304;98305;98306;98307 98305 4 KYAVLYQPLFDK QIEAKFYEEVHDLERKYAVLYQPLFDKRFE LERKYAVLYQPLFDKRFEIINAIYEPTEEE R K Y D K R 1 0 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 2 1 0 0 12 1 1483.8075 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543;F8VRJ2;F8VVB5 F8W020 105 116 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 0.0020578 76.228 By MS/MS By matching By matching By matching 2 1 1 1 0.83304 0.78494 43.326 5 Median 0.71543 0.68656 75.218 2 1 Median 0.83304 0.78494 NaN 1 0 Median 1.1012 1.1591 NaN 1 0 Median 0.78163 0.7813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14036000 8082300 5953700 11268000 6822200 4445300 1277000 612160 664870 1343500 562920 780620 147910 85005 62900 0 0 0 0 0 0 18558 1033 19340 96665;96666;96667;96668;96669 98308;98309;98310 98310 3 KYAVLYQPLFDKR QIEAKFYEEVHDLERKYAVLYQPLFDKRFE ERKYAVLYQPLFDKRFEIINAIYEPTEEEC R K Y K R F 1 1 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 2 1 0 0 13 2 1639.9086 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8W543;F8VRJ2;F8VVB5 F8W020 105 117 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 1.0526E-10 110.86 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 1 2 1 0.93299 1.0425 33.287 7 Median 1.0964 1.1401 12.656 2 0 Median 0.85611 0.87726 NaN 1 0 Median 0.53704 0.62307 NaN 1 0 Median 0.89474 0.96449 20.195 2 0 Median 1.5579 1.7822 NaN 1 0 Median NaN NaN NaN 0 0 Median 42779000 21110000 21669000 25741000 12475000 13267000 2162800 1175400 987390 6119800 3488300 2631500 4716100 2389800 2326300 4038900 1581900 2457000 0 0 0 18559 1033 19341 96670;96671;96672;96673;96674;96675;96676;96677 98311;98312;98313;98314;98315;98316;98317 98313 7 KYDAFLASESLIK KKLNKNKKLVKKLAKKYDAFLASESLIKQI AKKYDAFLASESLIKQIPRILGPGLNKAGK K K Y I K Q 2 0 0 1 0 0 1 0 0 1 2 2 0 1 0 2 0 0 1 0 0 0 13 1 1483.7922 P62906 P62906 106 118 RPL10A 60S ribosomal protein L10a yes yes 2;3 9.6046E-07 139.78 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 2 2 2 6 5 1.1561 1.1072 22.803 21 Median 1.0595 1.0719 32.656 4 1 Median 1.1151 1.0163 0.91588 2 0 Median 1.1654 1.1582 1.2786 2 0 Median 1.3405 1.2069 3.1036 2 0 Median 1.0934 1.2154 22.638 6 0 Median 1.2288 1.0665 27.425 5 0 Median 716940000 342120000 374820000 473160000 229880000 243280000 44840000 21450000 23391000 55405000 25048000 30357000 8017700 3425500 4592200 124550000 57594000 66961000 10961000 4721000 6239800 18560 2608 19342 96678;96679;96680;96681;96682;96683;96684;96685;96686;96687;96688;96689;96690;96691;96692;96693;96694;96695;96696;96697;96698 98318;98319;98320;98321;98322;98323;98324;98325;98326;98327;98328;98329;98330;98331;98332;98333 98330 16 KYDASLKELAQLK NSRDHANEELDELKRKYDASLKELAQLKEQ KRKYDASLKELAQLKEQGLLNRERDALLSE R K Y L K E 2 0 0 1 0 1 1 0 0 0 3 3 0 0 0 1 0 0 1 0 0 0 13 2 1505.8453 Q14789 Q14789 2760 2772 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.0059641 31.881 By MS/MS 1 1.1743 1.3871 NaN 1 Median 1.1743 1.3871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4630400 2178900 2451500 4630400 2178900 2451500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18561 2900 19343 96699 98334 98334 1 KYDEVLHMVR IDPTEFKFKLALINRKYDEVLHMVRNAKLV ALINRKYDEVLHMVRNAKLVGQSIIAYLQK R K Y V R N 0 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 2 0 0 10 1 1288.6598 P53621;A0A3B3IT15;A0A3B3IU89 P53621 607 616 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 0.0011455 51.927 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.246 1.1589 13.98 5 Median 1.1768 1.2099 7.0276 2 0 Median 1.246 1.1589 NaN 1 0 Median 1.3765 1.5591 NaN 1 0 Median 1.1414 1.0969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28700000 13151000 15549000 12270000 5671500 6598300 9805900 4706500 5099300 4233200 1659000 2574300 2391500 1114200 1277300 0 0 0 0 0 0 18562 2473 19344 96700;96701;96702;96703;96704 98335;98336;98337;98338;98339 98335 3 KYDTVLDILR TCNSMVLFDHVGCLKKYDTVLDILRDFFEL VGCLKKYDTVLDILRDFFELRLKYYGLRKE K K Y L R D 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 10 1 1234.6921 P11388 P11388 1011 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0058214 54.416 By MS/MS By matching By MS/MS 1 1 1 1.1188 1.2662 4.3499 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99929 1.1982 NaN 1 0 Median 1.3524 1.3055 NaN 1 0 Median 1.1188 1.2662 NaN 1 0 Median NaN NaN NaN 0 0 Median 13383000 6166800 7216000 0 0 0 0 0 0 7299600 3388200 3911400 672390 222550 449840 5410800 2556100 2854800 0 0 0 18563 1963 19345 96705;96706;96707 98340;98341 98341 2 KYEAIQLTFK GYKSIMELMNVLELRKYEAIQLTFKQVSKN VLELRKYEAIQLTFKQVSKNFSEVFQKLVP R K Y F K Q 1 0 0 0 0 1 1 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 10 1 1239.6863 Q9UQE7 Q9UQE7 1025 1034 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.00034363 106.2 By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 1.1492 1.3398 27.661 7 Median 1.2699 1.3473 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0437 1.2103 14.372 2 1 Median 1.7573 1.6739 NaN 1 1 Median 1.0969 1.1898 42.767 3 3 Median NaN NaN NaN 0 0 Median 90876000 41737000 49139000 803250 319020 484240 0 0 0 33293000 16946000 16347000 4049900 1572300 2477600 52730000 22900000 29830000 0 0 0 18564 4362 19346 96708;96709;96710;96711;96712;96713;96714 98342;98343;98344;98345;98346;98347;98348 98342 7 KYEDICPSTHNMDVPNIK HAKVHLVGIDIFTGKKYEDICPSTHNMDVP DICPSTHNMDVPNIKRNDFQLIGIQDGYLS K K Y I K R 0 0 2 2 1 0 1 0 1 2 0 2 1 0 2 1 1 0 1 1 0 0 18 1 2159.998 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 68 85 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 3 1.2761E-06 75.239 By MS/MS By MS/MS By MS/MS 1 1 1 0.81447 0.77345 5.7916 3 Median 0.81447 0.81223 NaN 1 0 Median 0.81811 0.72372 NaN 1 0 Median 0.76793 0.77345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57430000 32407000 25024000 15163000 8090200 7072300 20104000 11014000 9090100 22164000 13302000 8861100 0 0 0 0 0 0 0 0 0 18565 1287 19347 96715;96716;96717 98349;98350;98351;98352;98353;98354 98354 6 KYEDICPSTHNMDVPNIKR HAKVHLVGIDIFTGKKYEDICPSTHNMDVP ICPSTHNMDVPNIKRNDFQLIGIQDGYLSL K K Y K R N 0 1 2 2 1 0 1 0 1 2 0 2 1 0 2 1 1 0 1 1 0 0 19 2 2316.0991 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 68 86 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 4 0.00014959 37.687 By MS/MS By MS/MS 1 1 0.79268 0.85182 11.108 2 Median NaN NaN NaN 0 0 Median 0.90051 0.92142 NaN 1 0 Median 0.69776 0.78747 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12300000 6491500 5808200 0 0 0 5158000 2602800 2555200 7141700 3888800 3253000 0 0 0 0 0 0 0 0 0 18566 1287 19348 96718;96719 98355;98356;98357 98356 3 KYEEIDNAPEER AITKILAEGGGAKFKKYEEIDNAPEERARG KFKKYEEIDNAPEERARGITINAAHVEYST K K Y E R A 1 1 1 1 0 0 4 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 12 1 1491.6842 P49411 P49411 91 102 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 5.7947E-05 84.365 By MS/MS By MS/MS By MS/MS 2 4 1 0.99642 0.90984 21.729 7 Median 0.79666 0.8009 17.492 2 0 Median 1.0489 0.95737 20.437 4 2 Median 1.169 1.1826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23179000 11562000 11617000 7519700 4116100 3403600 13266000 6252900 7013400 2392600 1192700 1199900 0 0 0 0 0 0 0 0 0 18567 2382 19349 96720;96721;96722;96723;96724;96725;96726 98358;98359;98360;98361;98362;98363;98364;98365;98366 98359 9 KYEFGESDLR IIQERLRYAPLGWSKKYEFGESDLRSACDT LGWSKKYEFGESDLRSACDTVDTWLDDTAK K K Y L R S 0 1 0 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 1 1242.5881 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4204 4213 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 8.5799E-07 157.99 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 1.1923 1.1429 15.536 12 Median 0.98142 1.0215 1.4486 2 0 Median 1.2139 1.119 1.4733 3 0 Plateau 1.1435 1.3494 16.484 4 0 Median 1.2532 1.1673 15.584 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112870000 52296000 60574000 29779000 13622000 16157000 36313000 17005000 19308000 40537000 19059000 21478000 6240200 2609500 3630700 0 0 0 0 0 0 18568 2865 19350 96727;96728;96729;96730;96731;96732;96733;96734;96735;96736;96737;96738 98367;98368;98369;98370;98371;98372;98373;98374;98375;98376;98377;98378 98373 12 KYELGRPAANTK RRKTGGKRKPYHKKRKYELGRPAANTKIGP KKRKYELGRPAANTKIGPRRIHTVRVRGGC R K Y T K I 2 1 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 12 2 1346.7306 Q5JR95;P62241 Q5JR95 26 37 RPS8 40S ribosomal protein S8 yes no 3 0.047369 18.073 By matching By MS/MS By matching By MS/MS By matching By matching 3 2 1 1 2 3 1.014 1.0059 13.42 12 Median 0.93898 0.99982 7.1848 3 0 Plateau 1.0036 0.88966 16.33 2 0 Median 0.93707 1.0492 NaN 1 0 Median 1.1255 0.92833 NaN 1 0 Median 1.0979 1.2281 4.1936 2 0 Median 1.1449 1.0738 12.498 3 0 Median 26080000 13238000 12842000 7759200 4009700 3749400 5586100 2868700 2717400 2100600 1148500 952120 697750 311490 386260 8890900 4440400 4450500 1045900 459280 586590 18569 2573 19351 96739;96740;96741;96742;96743;96744;96745;96746;96747;96748;96749;96750 98379;98380 98379 2 KYEMFAQTLQQSR AMRFARRSVSDNDIRKYEMFAQTLQQSRGF IRKYEMFAQTLQQSRGFGSFRFPSGNQGGA R K Y S R G 1 1 0 0 0 3 1 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 13 1 1628.7981 P55072 P55072 754 766 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 3.5583E-22 199.43 By MS/MS By MS/MS By MS/MS By MS/MS 7 3 2 1 1.1794 1.2101 10.369 13 Median 1.1692 1.2101 2.0874 7 0 Median 1.2174 1.2026 19.446 3 0 Median 1.1341 1.2863 13.211 2 0 Median 1.4019 1.3364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239370000 108150000 131220000 191160000 87072000 104090000 30506000 13321000 17186000 16488000 7259500 9228200 1214300 500120 714160 0 0 0 0 0 0 18570 2494 19352;19353 96751;96752;96753;96754;96755;96756;96757;96758;96759;96760;96761;96762;96763 98381;98382;98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395;98396;98397;98398;98399 98387 1178 19 KYEPPRSEEVAVLK SQLLDIMKSMRNLVKKYEPPRSEEVAVLKQ KKYEPPRSEEVAVLKQKLERCHSAELALNV K K Y L K Q 1 1 0 0 0 0 3 0 0 0 1 2 0 0 2 1 0 0 1 2 0 0 14 2 1643.8883 D6RHI7;D6RG18;A0A2R8YEM2;P51946 D6RHI7 187 200 CCNH Cyclin-H yes no 3 0.030991 20.124 By matching By matching By matching By MS/MS 1 1 1 2 0.79419 0.82858 19.606 5 Median 0.96445 0.99902 NaN 1 0 Median 0.79419 0.82858 NaN 1 0 Median 0.56912 0.64452 NaN 1 0 Median 0.90817 0.89501 21.304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8175100 4100600 4074500 837540 385300 452240 1448000 764410 683600 4403100 2133100 2270000 1486500 817830 668670 0 0 0 0 0 0 18571 400 19354 96764;96765;96766;96767;96768 98400 98400 1 KYEPPVPTR HGPGGGKKDDKDKKKKYEPPVPTRVGKKKK DKDKKKKYEPPVPTRVGKKKKKTKGPDAAS K K Y T R V 0 1 0 0 0 0 1 0 0 0 0 1 0 0 3 0 1 0 1 1 0 0 9 1 1085.5869 P62191 P62191 24 32 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.0012119 94.302 By MS/MS By matching 1 1 0.66904 0.64164 10.671 2 Median 0.59084 0.595 NaN 1 0 Median 0.75759 0.69192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5842600 3245800 2596700 2317600 1326500 991120 3524900 1919300 1605600 0 0 0 0 0 0 0 0 0 0 0 0 18572 2571 19355 96769;96770 98401;98402 98402 2 KYEQGFITDPVVLSPK NCTPEFQANEVRKVKKYEQGFITDPVVLSP YEQGFITDPVVLSPKDRVRDVFEAKARHGF K K Y P K D 0 0 0 1 0 1 1 1 0 1 1 2 0 1 2 1 1 0 1 2 0 0 16 1 1819.972 P12268;H0Y4R1 P12268 109 124 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 0.00017756 48.004 By MS/MS By matching By matching By matching 2 2 1 1 0.85424 0.82552 12.219 6 Median 0.85424 0.81533 1.5587 2 0 Median 0.80978 0.76269 12.69 2 0 Median 0.78846 0.82668 NaN 1 0 Median 1.0226 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34362000 18561000 15801000 26291000 14330000 11961000 3166700 1721700 1445000 3489700 1795500 1694200 1415000 713370 701590 0 0 0 0 0 0 18573 1148 19356 96771;96772;96773;96774;96775;96776 98403;98404;98405;98406 98403 4 KYETVQDILK TCNSMVLFDHMGCLKKYETVQDILKEFFDL MGCLKKYETVQDILKEFFDLRLSYYGLRKE K K Y L K E 0 0 0 1 0 1 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1235.6762 Q02880;E9PCY5;H7BZ82 Q02880 1032 1041 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.00054256 80.102 By MS/MS By matching 1 1 0.93778 0.95224 16.047 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73573 0.85009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1953 1.0667 NaN 1 0 Median 6980700 4421600 2559100 0 0 0 0 0 0 6678000 4297900 2380100 0 0 0 0 0 0 302760 123710 179040 18574 2704 19357 96777;96778 98407 98407 1 KYFAQALK VKYTQGGLENLELSRKYFAQALKLNNRNMR ENLELSRKYFAQALKLNNRNMRALFGLYMS R K Y L K L 2 0 0 0 0 1 0 0 0 0 1 2 0 1 0 0 0 0 1 0 0 0 8 1 967.5491 Q15006 Q15006 213 220 EMC2 ER membrane protein complex subunit 2 yes yes 2 0.017005 55.902 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3262 1.2348 13.213 4 Median 1.0605 1.0334 NaN 1 0 Median 1.4539 1.3099 NaN 1 0 Median 1.3266 1.393 NaN 1 0 Median 1.3257 1.1641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13421000 5478500 7942100 7025400 2895200 4130100 2893000 1048100 1845000 1895800 862610 1033200 1606400 672630 933820 0 0 0 0 0 0 18575 2909 19358 96779;96780;96781;96782 98408;98409;98410 98410 3 KYFNSYTLTGR AGPESDAQYQFTGIKKYFNSYTLTGRMNCV TGIKKYFNSYTLTGRMNCVLATYGSIALIV K K Y G R M 0 1 1 0 0 0 0 1 0 0 1 1 0 1 0 1 2 0 2 0 0 0 11 1 1348.6776 Q96IX5 Q96IX5 17 27 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2;3 0.00014123 111.65 By MS/MS By matching 2 1 0.91748 0.89968 17.902 3 Median 0.81442 0.79861 16.852 2 0 Median 1.1635 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30110000 16652000 13459000 29239000 16259000 12980000 871150 392240 478900 0 0 0 0 0 0 0 0 0 0 0 0 18576 3680 19359 96783;96784;96785 98411;98412;98413;98414 98411 4 KYGGISTASVDFEQPTR REKYGIPEPPEPKRRKYGGISTASVDFEQP GGISTASVDFEQPTRDGLGSDNIGSRMLQA R K Y T R D 1 1 0 1 0 1 1 2 0 1 0 1 0 1 1 2 2 0 1 1 0 0 17 1 1854.9112 P98175 P98175 837 853 RBM10 RNA-binding protein 10 yes yes 3 5.174E-06 66.068 By MS/MS By matching 1 1 0.88105 0.91941 13.048 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73986 0.83838 NaN 1 0 Median 1.0492 1.0083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10657000 5738800 4917900 0 0 0 0 0 0 8764500 4654300 4110100 1892300 1084500 807790 0 0 0 0 0 0 18577 2671 19360 96786;96787 98415;98416 98416 2 KYGGPPPDSVYSGQQPSVGTEIFVGK LERTGYTLDVTTGQRKYGGPPPDSVYSGQQ SGQQPSVGTEIFVGKIPRDLFEDELVPLFE R K Y G K I 0 0 0 1 0 2 1 5 0 1 0 2 0 1 4 3 1 0 2 3 0 0 26 1 2693.3337 B7Z645;O60506;F6UXX1 O60506 143 168 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 3 6.0873E-26 83.701 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 4 2 0.66349 0.65312 14.794 12 Median 0.51761 0.48558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72083 0.75293 6.1466 3 2 Median 0.67804 0.64396 0.54545 2 0 Median 0.63695 0.67777 13.813 4 0 Median 0.67814 0.61062 8.688 2 0 Median 96348000 56499000 39849000 12216000 7596300 4619500 0 0 0 55541000 31954000 23587000 8484200 4917500 3566700 19562000 11730000 7832400 544390 301100 243290 18578 1619;634 19361 96788;96789;96790;96791;96792;96793;96794;96795;96796;96797;96798;96799 98417;98418;98419;98420;98421;98422;98423;98424;98425;98426;98427;98428;98429;98430;98431;98432;98433 98421 17 KYGGPPPDSVYSGVQPGIGTEVFVGK LERTGYTLDVTTGQRKYGGPPPDSVYSGVQ SGVQPGIGTEVFVGKIPRDLYEDELVPLFE R K Y G K I 0 0 0 1 0 1 1 6 0 1 0 2 0 1 4 2 1 0 2 4 0 0 26 1 2634.333 O43390 O43390 146 171 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2;3 4.0074E-22 89.979 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 3 5 1 0.51753 0.56176 16.059 12 Median 0.94788 0.90487 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49658 0.56811 6.4396 3 2 Median 0.61562 0.57418 17.131 2 0 Median 0.49678 0.53318 7.6237 5 0 Median 0.65929 0.5876 NaN 1 0 Median 253190000 170400000 82797000 1506500 608350 898110 0 0 0 126120000 88731000 37392000 2612700 1526600 1086100 122220000 79097000 43128000 728030 434820 293210 18579 1568 19362 96800;96801;96802;96803;96804;96805;96806;96807;96808;96809;96810;96811;96812 98434;98435;98436;98437;98438;98439;98440;98441;98442;98443;98444;98445;98446;98447;98448;98449;98450;98451;98452;98453;98454;98455 98435 22 KYGLNMCR SRSCRVCSNRHGLIRKYGLNMCRQCFRQYA NRHGLIRKYGLNMCRQCFRQYAKDIGFIKL R K Y C R Q 0 1 1 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 8 1 1040.4896 P62273;A0A087WTT6;A0A2R8Y851;A0A2R8Y6P7 P62273 33 40 RPS29 40S ribosomal protein S29 yes no 2 0.014593 59.205 By MS/MS By matching 1 1 1.2177 1.2303 29.427 2 Median NaN NaN NaN 0 0 Median 1.155 0.99915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2839 1.5148 NaN 1 0 Median NaN NaN NaN 0 0 Median 8673900 4015900 4658000 0 0 0 7550500 3488200 4062300 0 0 0 0 0 0 1123500 527720 595730 0 0 0 18580 2579 19363 96813;96814 98456 98456 1 KYGVDLIR YDCQEGKPKRTLYSKKYGVDLIRYTHAANT KRTLYSKKYGVDLIRYTHAANTVVYSSNKI K K Y I R Y 0 1 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 1 962.55492 Q6UXN9 Q6UXN9 63 70 WDR82 WD repeat-containing protein 82 yes yes 2 0.010906 66.073 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 0.95251 0.92164 26.639 8 Median 1.0356 1.0376 NaN 1 1 Median 1.0419 0.92164 13.406 2 0 Median 0.81063 0.85516 24.029 2 0 Median 1.087 1.0258 NaN 1 0 Median 0.43792 0.47915 NaN 1 0 Median 0.86879 0.79208 NaN 1 0 Median 34002000 16596000 17407000 8596200 3982100 4614100 3506900 1703200 1803700 13539000 6776300 6762300 7111100 3333100 3778000 548380 406500 141880 700910 394340 306570 18581 3190 19364 96815;96816;96817;96818;96819;96820;96821;96822 98457;98458;98459;98460 98459 4 KYGYILPDITKDELFK ADPAKFPEARLELARKYGYILPDITKDELF YGYILPDITKDELFKMLCTRKDPRQIFFGL R K Y F K M 0 0 0 2 0 0 1 1 0 2 2 3 0 1 1 0 1 0 2 0 0 0 16 2 1942.0452 Q9P015;E5RIZ4 Q9P015 239 254 MRPL15 39S ribosomal protein L15, mitochondrial yes no 3 0.068617 10.099 By MS/MS By matching 1 1 1.0514 1.0646 25.471 2 Median NaN NaN NaN 0 0 Median 1.2833 1.2747 NaN 1 0 Median 0.86144 0.88912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1732500 715880 1016600 0 0 0 1362200 545480 816740 370300 170390 199900 0 0 0 0 0 0 0 0 0 18582 4197 19365 96823;96824 98461 98461 1 KYHLMQFAEVTR VKMLLGHMPTVELLKKYHLMQFAEVTRAVS LLKKYHLMQFAEVTRAVSEGNLLLLHEALA K K Y T R A 1 1 0 0 0 1 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 12 1 1521.7762 Q5JVF3 Q5JVF3 273 284 PCID2 PCI domain-containing protein 2 yes yes 3 0.00015928 62.338 By MS/MS 1 1.2986 1.4767 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2986 1.4767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7056800 2696300 4360500 0 0 0 0 0 0 7056800 2696300 4360500 0 0 0 0 0 0 0 0 0 18583 3057 19366 96825 98462 98462 1 KYIIHKYPSLELER KACFQKSGASVVAIRKYIIHKYPSLELERR RKYIIHKYPSLELERRGYLLKQALKRELNR R K Y E R R 0 1 0 0 0 0 2 0 1 2 2 2 0 0 1 1 0 0 2 0 0 0 14 2 1787.9934 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 185 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 4 0.0012844 38.189 By MS/MS 1 0.59795 0.70465 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59795 0.70465 NaN 1 0 Median NaN NaN NaN 0 0 Median 4323800 2564100 1759700 0 0 0 0 0 0 0 0 0 0 0 0 4323800 2564100 1759700 0 0 0 18584 3075 19367 96826 98463 98463 1 KYIIYAK PNTYGVEPLPQEVLKKYIIYAKERVHPKLN PLPQEVLKKYIIYAKERVHPKLNQMDQDKV K K Y A K E 1 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 2 0 0 0 7 1 897.53239 P49736;H0Y8E6 P49736 722 728 MCM2 DNA replication licensing factor MCM2 yes no 2 0.019913 75.269 By matching By MS/MS 1 1 1.2091 1.2003 15.649 2 Median 1.0138 1.0745 NaN 1 0 Median 1.4419 1.3407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7291800 3666300 3625500 1099300 551210 548120 6192500 3115100 3077400 0 0 0 0 0 0 0 0 0 0 0 0 18585 2393 19368 96827;96828 98464;98465 98465 2 KYIPGTK IWGEDTLMEYLENPKKYIPGTKMIFVGIKK MEYLENPKKYIPGTKMIFVGIKKKEERADL K K Y T K M 0 0 0 0 0 0 0 1 0 1 0 2 0 0 1 0 1 0 1 0 0 0 7 1 805.46979 C9JFR7;P99999 C9JFR7 74 80 CYCS Cytochrome c no no 2 0.03632 54.157 By matching By matching By MS/MS 1 1 1 1.2481 1.1191 4.9669 3 Median 1.2318 1.1535 NaN 1 0 Median 1.2909 1.1191 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2481 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4983500 2214200 2769200 427250 199510 227740 568040 235100 332940 0 0 0 3988200 1779600 2208600 0 0 0 0 0 0 + 18586 696 19369 96829;96830;96831 98466;98467;98468 98467 3 KYLEVVLNTLQQASQAQVDK SVFGDIALAIGGEFKKYLEVVLNTLQQASQ VLNTLQQASQAQVDKSDYDMVDYLNELRES K K Y D K S 2 0 1 1 0 4 1 0 0 0 3 2 0 0 0 1 1 0 1 3 0 0 20 1 2274.222 Q14974;J3KTM9 Q14974 730 749 KPNB1 Importin subunit beta-1 yes no 3 0.0073154 22.118 By MS/MS By MS/MS 1 1 1.1218 1.1806 3.3412 2 Median NaN NaN NaN 0 0 Median 1.1914 1.153 NaN 1 0 Median 1.0563 1.2088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6542300 2996300 3546000 0 0 0 4584300 1975500 2608700 1958000 1020800 937240 0 0 0 0 0 0 0 0 0 18587 2904 19370 96832;96833 98469;98470;98471 98471 3 KYLLGVQPAWGSAEAVDIDR AGVGVEHEHLVDCARKYLLGVQPAWGSAEA VQPAWGSAEAVDIDRSVAQYTGGIAKLERD R K Y D R S 3 1 0 2 0 1 1 2 0 1 2 1 0 0 1 1 0 1 1 2 0 0 20 1 2187.1324 Q10713 Q10713 269 288 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 3 0.00088453 43.696 By MS/MS 1 0.89429 0.90457 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89429 0.90457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3447700 1951600 1496200 0 0 0 0 0 0 3447700 1951600 1496200 0 0 0 0 0 0 0 0 0 18588 2754 19371 96834 98472 98472 1 KYMEENDQLKK EAFKKQAESASEAAKKYMEENDQLKKGAAV EAAKKYMEENDQLKKGAAVDGGKLDVGNAE K K Y K K G 0 0 1 1 0 1 2 0 0 0 1 3 1 0 0 0 0 0 1 0 0 0 11 2 1424.697 P51572;A0A2R8Y5M6;C9JSP1;C9JQ75;C9J0M4;C9JMD7 P51572 149 159 BCAP31 B-cell receptor-associated protein 31 yes no 3 0.057662 16.137 By matching By MS/MS 2 1 1.1089 1.171 38.411 3 Median 0.78325 0.84222 46.614 2 0 Median 1.2111 1.1852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6241600 2988300 3253300 4841200 2339500 2501700 1400400 648830 751580 0 0 0 0 0 0 0 0 0 0 0 0 18589 2436 19372 96835;96836;96837 98473 98473 1 KYNPTWHCIVGR IEKDIAAYIKKEFDKKYNPTWHCIVGRNFG FDKKYNPTWHCIVGRNFGSYVTHETKHFIY K K Y G R N 0 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 1 1 1 1 0 0 12 1 1529.7562 P63167;Q96FJ2 Q96FJ2 49 60 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic no no 3 8.6348E-07 111.52 By MS/MS By MS/MS 1 1 0.93723 0.89777 16.409 2 Median NaN NaN NaN 0 0 Median 1.1419 1.0082 NaN 1 0 Median 0.76922 0.79941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23036000 12427000 10609000 0 0 0 16014000 8641000 7373300 7021500 3786100 3235400 0 0 0 0 0 0 0 0 0 18590 3649;2620 19373 96838;96839 98474;98475 98475 2 KYPDRVPVIVEK HPFEKRRSEGEKIRKKYPDRVPVIVEKAPK IRKKYPDRVPVIVEKAPKARIGDLDKKKYL K K Y E K A 0 1 0 1 0 0 1 0 0 1 0 2 0 0 2 0 0 0 1 3 0 0 12 2 1441.8293 H6UMI1;O95166;F5GZY7;Q9H0R8 H6UMI1 24 35 GABARAP;GABARAPL1 Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1 yes no 3 0.0062656 33.204 By MS/MS By MS/MS 1 1 0.76616 0.77488 11.595 2 Median NaN NaN NaN 0 0 Median 0.78764 0.71388 NaN 1 0 Median 0.74527 0.84109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11674000 5789200 5884600 0 0 0 9164800 4676200 4488700 2509000 1113000 1396000 0 0 0 0 0 0 0 0 0 18591 1241 19374 96840;96841 98476;98477;98478;98479 98478 4 KYPDYYQQIK GQLIAEPFYHLPSKKKYPDYYQQIKMPISL LPSKKKYPDYYQQIKMPISLQQIRTKLKNQ K K Y I K M 0 0 0 1 0 2 0 0 0 1 0 2 0 0 1 0 0 0 3 0 0 0 10 1 1344.6714 Q86U86;E7EVG2;H0Y5B5 Q86U86 416 425 PBRM1 Protein polybromo-1 yes no 2 0.02176 50.04 By MS/MS 1 2.1787 2.5218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1787 2.5218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11074000 3109200 7964700 0 0 0 0 0 0 11074000 3109200 7964700 0 0 0 0 0 0 0 0 0 18592 3273 19375 96842 98480 98480 1 KYPYHLMLQK ICSVGFTSPMLFDERKYPYHLMLQKFLCSG LFDERKYPYHLMLQKFLCSGGHNALFETFN R K Y Q K F 0 0 0 0 0 1 0 0 1 0 2 2 1 0 1 0 0 0 2 0 0 0 10 1 1319.706 Q7Z6Z7 Q7Z6Z7 1147 1156 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.0027317 56.632 By MS/MS By MS/MS 1 2 1.0802 0.93296 23.088 3 Plateau 0.68791 0.74946 NaN 1 1 Median 0.97558 0.93296 27.319 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52082000 23814000 28268000 10915000 5307200 5607600 41167000 18507000 22660000 0 0 0 0 0 0 0 0 0 0 0 0 18593 3253 19376 96843;96844;96845 98481;98482;98483 98483 3 KYQEQLVQEQELAK AVDKQLASELEYDMKKYQEQLVQEQELAKH KKYQEQLVQEQELAKHADVAGTAGGAEVAP K K Y A K H 1 0 0 0 0 4 3 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 14 1 1732.8996 P42695;E9PQA3 P42695 1258 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 3 0.00056859 43.316 By MS/MS By MS/MS By matching 1 1 1 0.71997 0.69808 25.813 3 Median 0.9606 0.94271 NaN 1 0 Median 0.71997 0.69808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5018 0.56394 NaN 1 0 Median NaN NaN NaN 0 0 Median 11412000 5690100 5722400 5814000 2813300 3000700 2168800 1066700 1102100 0 0 0 0 0 0 3429700 1810100 1619500 0 0 0 18594 2313 19377 96846;96847;96848 98484;98485;98486 98486 3 KYQLAVTK SVFGRLFDLCHPIHKKYQLAVTKVFGRFIT LCHPIHKKYQLAVTKVFGRFITAIVVASEK K K Y T K V 1 0 0 0 0 1 0 0 0 0 1 2 0 0 0 0 1 0 1 1 0 0 8 1 949.55967 Q8NDV3 Q8NDV3 529 536 SMC1B Structural maintenance of chromosomes protein 1B yes yes 2 0.004418 101.43 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 2 1.1601 1.0726 10.193 6 Median NaN NaN NaN 0 0 Median 1.2069 1.1269 NaN 1 0 Median 0.77384 0.88551 NaN 1 0 Median 1.1152 1.0389 NaN 1 0 Median 0.90404 0.97312 NaN 1 0 Median 1.2594 1.1319 3.1018 2 0 Median 18284000 8861600 9422400 0 0 0 2878800 1180700 1698100 2550100 1460600 1089600 617010 262110 354900 7966800 4072800 3894100 4271100 1885400 2385700 18595 3425 19378 96849;96850;96851;96852;96853;96854 98487;98488;98489;98490 98487 4 KYSNEDTLSVALPYFWEHFDK AHLPKSTFVLDEFKRKYSNEDTLSVALPYF TLSVALPYFWEHFDKDGWSLWYSEYRFPEE R K Y D K D 1 0 1 2 0 0 2 0 1 0 2 2 0 2 1 2 1 1 2 1 0 0 21 1 2588.2224 P26641 P26641 296 316 EEF1G Elongation factor 1-gamma yes yes 3 0.050554 7.8971 By MS/MS By matching 1 1 1.0586 1.053 25.381 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2095 1.26 NaN 1 0 Median 0.92652 0.88003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22740000 10023000 12717000 0 0 0 0 0 0 19233000 8145400 11087000 3507600 1877800 1629700 0 0 0 0 0 0 18596 2149 19379 96855;96856 98491 98491 1 KYSQFINFPIYVWSSK ASDYLELDTIKNLVKKYSQFINFPIYVWSS YSQFINFPIYVWSSKTETVEEPMEEEEAAK K K Y S K T 0 0 1 0 0 1 0 0 0 2 0 2 0 2 1 3 0 1 2 1 0 0 16 1 2006.0302 P14625;Q96GW1;A0A1W2PRR1 P14625 270 285 HSP90B1 Endoplasmin yes no 2;3 2.5145E-06 88.552 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1.0217 0.99695 24.293 9 Median 0.92756 0.95876 3.4163 4 0 Median 1.225 1.1855 10.908 2 0 Median 0.79217 0.90436 41.943 2 0 Median NaN NaN NaN 0 0 Median 1.4281 1.5971 NaN 1 0 Median NaN NaN NaN 0 0 Median 36474000 17138000 19336000 25656000 12661000 12995000 8804300 3614300 5190000 1261200 638960 622230 0 0 0 752590 224300 528290 0 0 0 18597 2006 19380 96857;96858;96859;96860;96861;96862;96863;96864;96865 98492;98493;98494;98495;98496;98497;98498;98499;98500;98501;98502 98496 11 KYSVDLLMDLLK LIFNILINGDGTLTRKYSVDLLMDLLKNPK LTRKYSVDLLMDLLKNPKIADYLTRYEHFS R K Y L K N 0 0 0 2 0 0 0 0 0 0 4 2 1 0 0 1 0 0 1 1 0 0 12 1 1436.7949 Q8TCG1;A0A087X211 Q8TCG1 252 263 KIAA1524 Protein CIP2A yes no 2 0.0064644 43.282 By MS/MS 1 1.2485 1.2079 NaN 1 Median NaN NaN NaN 0 0 Median 1.2485 1.2079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2798900 1183900 1615000 0 0 0 2798900 1183900 1615000 0 0 0 0 0 0 0 0 0 0 0 0 18598 127 19381 96866 98503 98503 1 KYTEITATYFQGVR GNKPEDCPYLWAHMKKYTEITATYFQGVRL KKYTEITATYFQGVRLDNCHSTPLHVAEYM K K Y V R L 1 1 0 0 0 1 1 1 0 1 0 1 0 1 0 0 3 0 2 1 0 0 14 1 1675.857 P35573 P35573 511 524 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 0.0035024 30.998 By MS/MS 1 1.0956 1.1126 NaN 1 Median 1.0956 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3081100 1624100 1457000 3081100 1624100 1457000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18599 2243 19382 96867 98504 98504 1 KYTELQLEAAK YKKMQAGEEVTELRRKYTELQLEAAKRGIL ELRRKYTELQLEAAKRGILSSGRGRGIHSR R K Y A K R 2 0 0 0 0 1 2 0 0 0 2 2 0 0 0 0 1 0 1 0 0 0 11 1 1292.6976 Q5T8P6 Q5T8P6 837 847 RBM26 RNA-binding protein 26 no no 3 0.03634 30.563 By MS/MS 1 1.1638 1.1086 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1638 1.1086 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1458200 617780 840410 0 0 0 0 0 0 0 0 0 1458200 617780 840410 0 0 0 0 0 0 18600 3097 19383 96868 98505 98505 1 KYTELQLEAAKR YKKMQAGEEVTELRRKYTELQLEAAKRGIL LRRKYTELQLEAAKRGILSSGRGRGIHSRG R K Y K R G 2 1 0 0 0 1 2 0 0 0 2 2 0 0 0 0 1 0 1 0 0 0 12 2 1448.7987 Q5T8P6 Q5T8P6 837 848 RBM26 RNA-binding protein 26 no no 3 0.0037864 72.705 By MS/MS By MS/MS By matching 1 2 1 0.79083 0.76785 28.455 3 Median 1.0768 1.224 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64132 0.73077 NaN 1 1 Median 0.79083 0.76785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9762700 5320700 4442000 1816900 916790 900160 0 0 0 7405400 4113700 3291600 540370 290150 250220 0 0 0 0 0 0 18601 3097 19384 96869;96870;96871;96872 98506;98507;98508 98508 3 KYTGEDFDEDLR AWMNGLSVYQIKVHRKYTGEDFDEDLRTVL VHRKYTGEDFDEDLRTVLRRSGCKNEKIAF R K Y L R T 0 1 0 3 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 12 1 1486.6576 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2966 2977 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 4.8545E-06 130.56 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1.065 1.1549 16.861 8 Median 0.94893 0.98163 7.3278 2 0 Median 1.2297 1.1343 22.165 3 0 Median 1.065 1.2506 1.8386 2 0 Median 1.3514 1.2588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62236000 29383000 32852000 16805000 8240400 8564700 33484000 15948000 17537000 10850000 4811200 6038600 1096500 383810 712640 0 0 0 0 0 0 18602 2865 19385 96873;96874;96875;96876;96877;96878;96879;96880;96881 98509;98510;98511;98512;98513;98514;98515;98516;98517 98515 9 KYTLFSASSEGQNHSR GGELLQWDLTQSWRRKYTLFSASSEGQNHS YTLFSASSEGQNHSRIVFNLCPLQTEDDKQ R K Y S R I 1 1 1 0 0 1 1 1 1 0 1 1 0 1 0 4 1 0 1 0 0 0 16 1 1810.8598 Q8TEQ6 Q8TEQ6 320 335 GEMIN5 Gem-associated protein 5 yes yes 3 0.022605 16.685 By MS/MS 1 1.1747 1.1951 NaN 1 Median 1.1747 1.1951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2750500 1321700 1428800 2750500 1321700 1428800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18603 3478 19386 96882 98518;98519 98518 2 KYTLTMEDLTPALSEYGINVK KGTASGSSRSKSKDRKYTLTMEDLTPALSE EDLTPALSEYGINVKKPHYFT_________ R K Y V K K 1 0 1 1 0 0 2 1 0 1 3 2 1 0 1 1 3 0 2 1 0 0 21 1 2385.2138 Q12962;A0A087WWP5 Q12962 192 212 TAF10 Transcription initiation factor TFIID subunit 10 yes no 3 0.079664 0 By MS/MS 1 0.98047 0.90084 NaN 1 Median NaN NaN NaN 0 0 Median 0.98047 0.90084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 477890 246370 231530 0 0 0 477890 246370 231530 0 0 0 0 0 0 0 0 0 0 0 0 18604 2774 19387 96883 98520;98521 98520 2 KYTMGDAPDYDR IRLLLEYTDSSYEEKKYTMGDAPDYDRSQW EEKKYTMGDAPDYDRSQWLNEKFKLGLDFP K K Y D R S 1 1 0 3 0 0 0 1 0 0 0 1 1 0 1 0 1 0 2 0 0 0 12 1 1430.6136 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7;A0A0A0MR85;H3BQT3;B9ZVX7;E7EWW9;Q03013;P09488 E9PHN7 32 43 GSTM2;GSTM4;GSTM1 Glutathione S-transferase Mu 2;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1 yes no 2;3 0.00041231 83 By MS/MS By MS/MS 2 2 0.77442 0.76848 24.14 4 Median 0.67434 0.70817 16.178 2 0 Median 0.97439 0.91304 28.997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11933000 6404700 5528000 8991000 4908400 4082700 2941700 1496400 1445300 0 0 0 0 0 0 0 0 0 0 0 0 18605 935 19388 96884;96885;96886;96887 98522;98523;98524;98525 98525 4 KYVATLGVEVHPLVFHTNR KTTFVKRHLTGEFEKKYVATLGVEVHPLVF TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K K Y N R G 1 1 1 0 0 0 1 1 2 0 2 1 0 1 1 0 2 0 1 4 0 0 19 1 2179.1902 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 38 56 RAN GTP-binding nuclear protein Ran yes no 3;4;5 2.6868E-08 67.866 By MS/MS By MS/MS By matching By matching 4 3 1 2 1.0438 0.9952 18.421 10 Median 1.1184 0.9952 21.376 4 0 Linear 1.1111 1.0206 4.2002 3 0 Plateau NaN NaN NaN 0 0 Median 1.626 1.4394 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1065 0.97289 4.4284 2 0 Median 252620000 119000000 133620000 196820000 92612000 104210000 31606000 14604000 17002000 0 0 0 646170 213120 433050 0 0 0 23554000 11573000 11981000 18606 623 19389 96888;96889;96890;96891;96892;96893;96894;96895;96896;96897 98526;98527;98528;98529;98530;98531;98532;98533;98534;98535 98532 10 KYVIYIER YKGQQIGKVVQVYRKKYVIYIERVQREKAN VVQVYRKKYVIYIERVQREKANGTTVHVGI K K Y E R V 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 1 1082.6124 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KS10 P61254 77 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0055886 84.498 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.041 0.98208 14.087 6 Median 0.96789 0.98208 1.5195 2 0 Median 1.041 0.94282 3.603 2 0 Median NaN NaN NaN 0 0 Median 1.4419 1.2764 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3981 1.2393 NaN 1 0 Median 53400000 25958000 27442000 30423000 15429000 14994000 15440000 7273800 8166000 0 0 0 4327800 1904600 2423200 0 0 0 3209300 1350700 1858600 18607 2554 19390 96898;96899;96900;96901;96902;96903 98536;98537;98538;98539;98540;98541;98542 98537 7 KYVSQYYPK TRLCEPKEASYSLIRKYVSQYYPKLRVDIR SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ R K Y P K L 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 3 1 0 0 9 1 1174.6023 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 283 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.062226 40.882 By MS/MS 1 0.80275 0.8997 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80275 0.8997 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7143200 3404900 3738300 0 0 0 0 0 0 7143200 3404900 3738300 0 0 0 0 0 0 0 0 0 18608 3075 19391 96904 98543 98543 1 KYWDVPPPGFEHITPMQYK GLIRSPRHEKKKKVRKYWDVPPPGFEHITP VPPPGFEHITPMQYKAMQAAGQIPATALLP R K Y Y K A 0 0 0 1 0 1 1 1 1 1 0 2 1 1 4 0 1 1 2 1 0 0 19 1 2332.1351 P26368;K7ELP8 P26368 90 108 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3;4 1.0561E-07 68.567 By MS/MS By matching By MS/MS 4 1 1 0.55016 0.57388 16.692 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55016 0.57388 13.394 4 2 Median 0.77977 0.77944 NaN 1 0 Median 0.50963 0.54345 NaN 1 1 Median NaN NaN NaN 0 0 Median 43573000 28244000 15329000 0 0 0 0 0 0 40900000 26249000 14651000 135000 71414 63583 2537800 1923900 613900 0 0 0 18609 2143 19392 96905;96906;96907;96908;96909;96910 98544;98545;98546;98547;98548;98549 98548 6 KYWFLNR PYIRHEPIGYDRSRRKYWFLNRRLIIEEDT IGYDRSRRKYWFLNRRLIIEEDTENENEKK R K Y N R R 0 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 7 1 1025.5447 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 469 475 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0089808 93.593 By MS/MS By matching 1 1 1.0828 1.1247 3.0967 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94988 1.1004 NaN 1 0 Median 1.2342 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7335200 3543600 3791600 0 0 0 0 0 0 7055200 3408000 3647200 279990 135590 144400 0 0 0 0 0 0 18610 2762 19393 96911;96912 98550 98550 1 KYYKVEPLDFGGTQK APWYLDLISYGQDWRKYYKVEPLDFGGTQK KYYKVEPLDFGGTQKQKQLFIGGEACLWGE R K Y Q K Q 0 0 0 1 0 1 1 2 0 0 1 3 0 1 1 0 1 0 2 1 0 0 15 2 1771.9145 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 462 476 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 3 0.00010605 51.695 By MS/MS By MS/MS 1 1 1.1217 1.1403 34.291 2 Median 0.84728 0.89479 NaN 1 0 Median 1.485 1.4532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13383000 6425800 6957400 10750000 5303900 5446300 2633100 1121900 1511100 0 0 0 0 0 0 0 0 0 0 0 0 18611 1888 19394 96913;96914 98551;98552;98553 98552 3 KYYLFGR VKGDKLIEKLIIDEKKYYLFGRNPDLCDFT EKLIIDEKKYYLFGRNPDLCDFTIDHQSCS K K Y G R N 0 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 2 0 0 0 7 1 945.50724 Q12972 Q12972 47 53 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 2 0.0088726 93.885 By MS/MS By matching 1 1 1.166 1.1643 2.5575 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0411 1.1855 NaN 1 0 Median 1.3058 1.1434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14246000 6338700 7907400 0 0 0 0 0 0 12459000 5652200 6806600 1787300 686490 1100800 0 0 0 0 0 0 18612 2775 19395 96915;96916 98554 98554 1 LAAAALKPSATFDPGSGQQVTPAR RISASKGLISPMMARLAAAALKPSATFDPG ATFDPGSGQQVTPARFPPAQVKPEPGESTG R L A A R F 6 1 0 1 0 2 0 2 0 0 2 1 0 1 3 2 2 0 0 1 0 0 24 1 2353.239 Q86V15 Q86V15 880 903 CASZ1 Zinc finger protein castor homolog 1 yes yes 3 2.8571E-16 67.364 By MS/MS 2 0.73145 0.85258 73.993 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73145 0.85258 73.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13329000 7697800 5630700 0 0 0 0 0 0 13329000 7697800 5630700 0 0 0 0 0 0 0 0 0 18613 3283 19396 96917;96918 98555 98555 1 LAAAEETAVSPR LTLGLAKRVWSLERRLAAAEETAVSPRKSP ERRLAAAEETAVSPRKSPRPAGPQLFLPDP R L A P R K 4 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1213.6303 Q9BUH6 Q9BUH6 139 150 C9orf142 Protein PAXX yes yes 2 3.9932E-06 107.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.76906 0.69551 11.401 4 Median 0.6259 0.59038 NaN 1 1 Median 0.85691 0.72931 NaN 1 1 Median 0.69022 0.66328 NaN 1 0 Median 0.92375 0.76412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13313000 7579500 5733700 2189500 1266400 923090 1137700 555290 582390 8391900 5043400 3348500 1594200 714440 879760 0 0 0 0 0 0 18614 3839 19397 96919;96920;96921;96922 98556;98557;98558;98559;98560 98557 5 LAAAFAVSR SEFSTSETMGHSADRLAAAFAVSRLEQDEY GHSADRLAAAFAVSRLEQDEYALRSHSLAK R L A S R L 4 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 904.51305 P55084;F5GZQ3 P55084 230 238 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 1.8617E-05 155.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1 1 1.6261 1.3949 22.533 9 Median 1.2103 1.1298 3.954 2 0 Median 1.6986 1.4266 11.393 3 0 Median 1.186 1.1484 NaN 1 0 Median 1.5563 1.3354 NaN 1 0 Median 2.1799 2.1916 NaN 1 0 Median 1.9473 1.6725 NaN 1 1 Median 248930000 106710000 142220000 82067000 38010000 44057000 23661000 9121700 14540000 61419000 28954000 32465000 67294000 25557000 41737000 6641400 2350300 4291100 7842500 2712000 5130500 18615 2496 19398 96923;96924;96925;96926;96927;96928;96929;96930;96931 98561;98562;98563;98564;98565;98566;98567;98568;98569;98570 98562 10 LAAAILGGVDQIHIKPGAK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK ILGGVDQIHIKPGAKVLYLGAASGTTVSHV K L A A K V 4 0 0 1 0 1 0 3 1 3 2 2 0 0 1 0 0 0 0 1 0 0 19 1 1871.0993 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 144 162 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3;4 3.9479E-09 93.959 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 11 4 0.95513 0.98627 10.289 29 Median 1.0202 0.9805 2.1889 3 0 Median 1.0449 0.94169 22.281 3 0 Median 0.95429 0.99032 5.9104 4 0 Median 1.2066 1.0669 5.9878 4 0 Median 0.87499 0.94625 6.9914 11 0 Median 1.1799 0.99857 13.678 4 0 Median 472030000 229840000 242190000 16065000 7735600 8329400 3303000 1535700 1767300 190990000 89188000 101800000 3849000 1693800 2155200 250660000 126360000 124300000 7165500 3332700 3832800 18616 2097 19399 96932;96933;96934;96935;96936;96937;96938;96939;96940;96941;96942;96943;96944;96945;96946;96947;96948;96949;96950;96951;96952;96953;96954;96955;96956;96957;96958;96959;96960 98571;98572;98573;98574;98575;98576;98577;98578;98579;98580;98581;98582;98583;98584;98585;98586;98587;98588;98589;98590;98591;98592;98593 98584 23 LAAAQAAGLAAAHSVR VYRRAGRDVAALASRLAAAQAAGLAAAHSV AAAQAAGLAAAHSVRLARGDLCALAERLDI R L A V R L 8 1 0 0 0 1 0 1 1 0 2 0 0 0 0 1 0 0 0 1 0 0 16 0 1476.8161 K7EN58;Q6QNY0 K7EN58 22 37 BLOC1S3 Biogenesis of lysosome-related organelles complex 1 subunit 3 yes no 3 1.4678E-05 79.022 By MS/MS By MS/MS By MS/MS 1 1 1 0.98778 0.94924 14.917 3 Median 0.82945 0.78558 NaN 1 0 Median 1.2445 1.0545 NaN 1 0 Median 0.98778 0.94924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19233000 8826800 10406000 8340600 3614800 4725800 2780100 1275500 1504600 8112500 3936400 4176100 0 0 0 0 0 0 0 0 0 18617 1383 19400 96961;96962;96963 98594;98595;98596;98597 98595 3 LAAAVSNFGYDLYR PVEEEDPFFKVPVNKLAAAVSNFGYDLYRV KLAAAVSNFGYDLYRVRSGESPTANVLLSP K L A Y R V 3 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 0 0 2 1 0 0 14 0 1558.778 CON__Q95121;I3L425;I3L3Z3;I3L1U4;I3L4Z0;I3L2R7;P36955 CON__Q95121 52 65 SERPINF1 Pigment epithelium-derived factor yes no 2 0.023711 43.512 By MS/MS 1 0.3728 0.36552 NaN 1 Median 0.3728 0.36552 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 859090 686260 172830 859090 686260 172830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 18618 791 19401 96964 98598 98598 1 LAACGAEAAAYGR VWGRVRSRLRAFPERLAACGAEAAAYGRCV ERLAACGAEAAAYGRCVQASTAPGGRLSKD R L A G R C 6 1 0 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 13 0 1279.5979 A1L188 A1L188 22 34 C17orf89 Uncharacterized protein C17orf89 yes yes 2 0.00082792 64.297 By MS/MS 1 1.3947 1.1281 NaN 1 Median NaN NaN NaN 0 0 Median 1.3947 1.1281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 608840 260430 348410 0 0 0 608840 260430 348410 0 0 0 0 0 0 0 0 0 0 0 0 18619 493 19402 96965 98599 98599 1 LAADAGTFLSR ______________________________ NVKKLAADAGTFLSRAVQFTEEKLGQAEKT K L A S R A 3 1 0 1 0 0 0 1 0 0 2 0 0 1 0 1 1 0 0 0 0 0 11 0 1120.5877 A0A087WW40;Q9Y371 A0A087WW40 11 21 SH3GLB1 Endophilin-B1 yes no 2 0.00011268 125.57 By MS/MS By MS/MS By matching By matching 1 2 2 1 1.4354 1.3807 9.7372 6 Median 1.4366 1.4348 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2084 1.2425 16.29 2 0 Median 1.6063 1.3894 4.2213 2 0 Median 1.3685 1.3672 NaN 1 0 Median NaN NaN NaN 0 0 Median 101330000 42437000 58892000 17887000 8161800 9724800 0 0 0 51185000 21515000 29670000 22042000 8726800 13315000 10215000 4033100 6181800 0 0 0 18620 52 19403 96966;96967;96968;96969;96970;96971 98600;98601;98602 98600 3 LAADDFR TVDNARIVLQIDNARLAADDFRVKYETELA VLQIDNARLAADDFRVKYETELAMRQSVEN R L A F R V 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 806.39227 P13645;CON__P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;CON__A2A5Y0;CON__REFSEQ:XP_986630;CON__O76014;CON__O76013;CON__O76015;CON__Q9UE12;CON__Q14525;CON__Q14532;CON__A2AB72;CON__Q15323;Q15323;O76013;Q14532;Q14525;O76014;O76015;K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;K7EMD9;CON__P02535-1;CON__P08730-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9;CON__Q6IFX2;CON__P05784;CON__P08727;P08727;C9JM50;CON__P19001;P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 159 165 KRT10;KRT28;KRT31;KRT36;KRT32;KRT33B;KRT37;KRT38;KRT13;KRT16;KRT14;KRT17;KRT19;KRT18;KRT35 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cuticular Ha1;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha7;Keratin, type I cuticular Ha8;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5 no no 1;2 1.5946E-05 144.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 11 12 15 7 11 0.080713 0.082364 174.63 57 Median 0.051749 0.050792 127.3 10 6 Median 0.039023 0.031954 187.32 11 7 Median 0.12962 0.12453 176.65 9 5 Median 0.017788 0.015134 205.47 12 7 Median 0.15574 0.15603 102.35 6 0 Median 0.79002 0.62273 122.46 9 1 Median 2371800000 1791500000 580370000 195720000 166630000 29093000 371310000 309480000 61824000 328680000 236720000 91960000 627670000 475570000 152100000 486250000 370110000 116150000 362210000 232970000 129240000 + 18621 1869;768;756;739;752;754;787;749;740;760;736;753 19404 96972;96973;96974;96975;96976;96977;96978;96979;96980;96981;96982;96983;96984;96985;96986;96987;96988;96989;96990;96991;96992;96993;96994;96995;96996;96997;96998;96999;97000;97001;97002;97003;97004;97005;97006;97007;97008;97009;97010;97011;97012;97013;97014;97015;97016;97017;97018;97019;97020;97021;97022;97023;97024;97025;97026;97027;97028;97029;97030;97031;97032;97033;97034;97035;97036;97037 98603;98604;98605;98606;98607;98608;98609;98610;98611;98612;98613;98614;98615;98616;98617;98618;98619;98620;98621;98622;98623;98624;98625;98626;98627;98628;98629;98630;98631;98632;98633;98634;98635;98636;98637;98638;98639;98640;98641;98642;98643;98644;98645;98646;98647;98648;98649;98650;98651;98652;98653;98654;98655;98656;98657;98658;98659;98660;98661;98662;98663;98664;98665;98666;98667;98668;98669;98670;98671;98672;98673;98674;98675;98676;98677;98678;98679;98680;98681;98682;98683;98684;98685;98686;98687;98688 98653 86 LAADFQR ______________________________ DAWEEIRRLAADFQRAQFAEATQRLSERNC R L A Q R A 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 819.4239 O94874 O94874 11 17 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.059615 37.558 By MS/MS 1 0.73682 0.73345 NaN 1 Median 0.73682 0.73345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 890940 473040 417900 890940 473040 417900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18622 1732 19405 97038 98689 98689 1 LAADFSVPLIIDIK RRLSSFVTKGYRTRRLAADFSVPLIIDIKC RLAADFSVPLIIDIKCTKLFVEALGQIGPA R L A I K C 2 0 0 2 0 0 0 0 0 3 2 1 0 1 1 1 0 0 0 1 0 0 14 0 1513.8756 F8VPD4;P27708;H7C3Z5 F8VPD4 1355 1368 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0016794 47.261 By MS/MS 1 0.93044 0.82559 NaN 1 Median NaN NaN NaN 0 0 Median 0.93044 0.82559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4172400 2120700 2051600 0 0 0 4172400 2120700 2051600 0 0 0 0 0 0 0 0 0 0 0 0 18623 1057 19406 97039 98690 98690 1 LAAEATEWQR PENILLSVNEQYIRRLAAEATEWQRSGAPP QYIRRLAAEATEWQRSGAPPPSGSAVSTAP R L A Q R S 3 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 10 0 1173.5778 H3BLV9;Q96SB4 H3BLV9 247 256 SRPK1 SRSF protein kinase 1 yes no 2 0.00050373 118.5 By MS/MS 1 0.9286 0.95695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9286 0.95695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6667200 2981700 3685500 0 0 0 0 0 0 6667200 2981700 3685500 0 0 0 0 0 0 0 0 0 18624 1207 19407 97040 98691;98692 98692 2 LAAEEQFQALVK KEVELQHIRKDLEEKLAAEEQFQALVKQMN EEKLAAEEQFQALVKQMNQTLQDKTNQIDL K L A V K Q 3 0 0 0 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1345.7242 Q14789;E7EU81;H0Y867 Q14789 1084 1095 GOLGB1 Golgin subfamily B member 1 yes no 2 5.325E-06 115.71 By MS/MS By MS/MS 2 1 1.3576 1.185 26.727 3 Median 1.4748 1.4394 34.3 2 0 Median 1.3576 1.185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36187000 15433000 20754000 31001000 13215000 17786000 5185600 2217500 2968100 0 0 0 0 0 0 0 0 0 0 0 0 18625 2900 19408 97041;97042;97043 98693;98694;98695 98693 3 LAAEIDDR MVEDACMLLADYNGRLAAEIDDRKQLTRML LADYNGRLAAEIDDRKQLTRMLADFLRCQK R L A D R K 2 1 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 901.45051 Q96P16;A0A0C4DGQ6;K7EP82 Q96P16 230 237 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 0.044487 60.436 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18626 3709 19409 97044 98696 98696 1 LAAELEDR TVDEACLLLAEYNGRLAAELEDRRQLARML LAEYNGRLAAELEDRRQLARMLVEYTQNQK R L A D R R 2 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 915.46616 Q9NQG5;A2A2M0;A0A087X2D2 Q9NQG5 244 251 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0073 0.86597 10.66 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87707 0.86597 NaN 1 0 Median 1.0787 0.92971 13.916 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8752000 5102400 3649600 0 0 0 0 0 0 6338400 3914000 2424400 2413600 1188400 1225200 0 0 0 0 0 0 18627 4062 19410 97045;97046;97047;97048;97049 98697;98698;98699;98700;98701;98702 98698 6 LAAELEDRR TVDEACLLLAEYNGRLAAELEDRRQLARML AEYNGRLAAELEDRRQLARMLVEYTQNQKD R L A R R Q 2 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1071.5673 Q9NQG5;A2A2M0;A0A087X2D2 Q9NQG5 244 252 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2 0.05907 41.502 By MS/MS 1 1.0538 1.1247 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0538 1.1247 NaN 1 1 Median NaN NaN NaN 0 0 Median 2441100 1150100 1291000 0 0 0 0 0 0 0 0 0 0 0 0 2441100 1150100 1291000 0 0 0 18628 4062 19411 97050 98703 98703 1 LAAEQELIR LEKQRQLAEGTAQQRLAAEQELIRLRAETE GTAQQRLAAEQELIRLRAETEQGEQQRQLL R L A I R L 2 1 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1846 1854 PLEC Plectin yes yes 2 0.00039751 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1.3153 1.1645 17.2 10 Median 1.3095 1.2612 9.807 2 0 Median 1.504 1.2363 15.781 2 1 Median 1.0175 1.0706 8.6717 2 0 Median 1.1947 0.94836 31.311 2 0 Median 1.2744 1.2981 NaN 1 1 Median 1.4006 1.1523 NaN 1 0 Median 213120000 92006000 121110000 56594000 25527000 31067000 68031000 27838000 40193000 24671000 11335000 13336000 8835400 3757200 5078200 25855000 11920000 13936000 29135000 11630000 17505000 18629 2933 19412 97051;97052;97053;97054;97055;97056;97057;97058;97059;97060 98704;98705;98706;98707;98708;98709;98710;98711;98712;98713;98714;98715 98715 12 LAAFGQLHK QQREDITQSAQHALRLAAFGQLHKVLGMDP AQHALRLAAFGQLHKVLGMDPLPSKMPKKP R L A H K V 2 0 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 983.55525 Q12906 Q12906 324 332 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.0009164 90.777 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 5 5 1.126 1.1035 12.016 18 Median 1.3268 1.2512 3.5929 2 0 Median 1.3309 1.1515 2.5819 2 0 Median 1.0025 1.0444 8.5882 2 0 Median 1.4207 1.223 5.777 2 0 Median 1.0511 1.1017 9.4108 5 1 Median 1.1261 0.92087 5.7348 5 0 Median 311930000 148350000 163580000 9445300 3903600 5541700 12659000 5878100 6781200 45001000 23040000 21961000 18187000 7881200 10306000 174210000 83611000 90597000 52426000 24038000 28388000 18630 2769 19413 97061;97062;97063;97064;97065;97066;97067;97068;97069;97070;97071;97072;97073;97074;97075;97076;97077;97078 98716;98717;98718;98719;98720;98721;98722;98723;98724;98725;98726;98727;98728;98729;98730;98731;98732 98716 17 LAAGASVLK MMLLSEGMKEEGLFRLAAGASVLKRLKQTM EEGLFRLAAGASVLKRLKQTMASDPHSLEE R L A L K R 3 0 0 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 828.5069 Q9Y3L3;Q6ZT62;A0A2R8Y5V0 Q9Y3L3 313 321 SH3BP1 SH3 domain-binding protein 1 yes no 2 0.018838 64.803 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18631 3200 19414 97079 98733 98733 1 LAAGDQLLSVDGR VKSVVKGGAADVDGRLAAGDQLLSVDGRSL GRLAAGDQLLSVDGRSLVGLSQERAAELMT R L A G R S 2 1 0 2 0 1 0 2 0 0 3 0 0 0 0 1 0 0 0 1 0 0 13 0 1313.6939 J3KN01;P55196;Q5TIG5;A8MQ02 J3KN01 1059 1071 MLLT4 Afadin yes no 2 9.9221E-07 154.35 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0972 1.1747 26.726 5 Median 1.4544 1.3651 NaN 1 0 Median 1.0972 0.93326 NaN 1 0 Median 1.0756 1.1747 NaN 1 0 Median 1.0246 0.90473 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9965 1.713 NaN 1 0 Median 28067000 12058000 16010000 12594000 5457500 7136700 3499700 1545100 1954600 10413000 4474000 5939300 926740 409960 516780 0 0 0 633400 170970 462430 18632 1300 19415 97080;97081;97082;97083;97084 98734;98735;98736;98737;98738;98739;98740 98736 7 LAAGRPFNTYPR DVGTPQPAGLASGAKLAAGRPFNTYPRADT GAKLAAGRPFNTYPRADTDHPSRGAQGEPH K L A P R A 2 2 1 0 0 0 0 1 0 0 1 0 0 1 2 0 1 0 1 0 0 0 12 1 1361.7204 O96013 O96013 199 210 PAK4 Serine/threonine-protein kinase PAK 4 yes yes 3 0.035227 20.84 By MS/MS 1 0.60368 0.67366 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60368 0.67366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4003600 2698400 1305100 0 0 0 0 0 0 4003600 2698400 1305100 0 0 0 0 0 0 0 0 0 18633 1807 19416 97085 98741 98741 1 LAAGSAIMK TEQKRISKSDMSRLRLAAGSAIMKLAQEPC DMSRLRLAAGSAIMKLAQEPCYHEIITPEQ R L A M K L 3 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 9 0 860.47897 Q29RF7 Q29RF7 890 898 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0069694 52.937 By MS/MS By matching 1 1 1.0597 1.007 0.31288 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94389 1.0092 NaN 1 0 Median 1.1897 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10776000 5083600 5692500 0 0 0 0 0 0 9064500 4449000 4615500 1711600 634630 1077000 0 0 0 0 0 0 18634 3003 19417 97086;97087 98742;98743 98743 2 LAAGSAIVK TEQGKISKPDMSRLRLAAGSAIVKLAQEPC DMSRLRLAAGSAIVKLAQEPCYHEIITLEQ R L A V K L 3 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 828.5069 Q9NTI5 Q9NTI5 880 888 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.0024558 71.877 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1617 1.1108 16.855 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86546 0.938 NaN 1 0 Median 1.4648 1.2873 20.862 2 0 Median 1.1504 1.195 2.6376 2 0 Median 1.1394 0.95852 0.7526 2 0 Median 19456000 9445300 10011000 0 0 0 0 0 0 5076100 2663700 2412400 1517500 615810 901670 7151300 3517300 3634000 5711500 2648500 3063000 18635 4107 19418 97088;97089;97090;97091;97092;97093;97094 98744;98745;98746;98747;98748;98749 98746 6 LAAIAESGVER ALAMERDGSSGGVIRLAAIAESGVERQVLL GVIRLAAIAESGVERQVLLGDQIPKFAVAT R L A E R Q 3 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1114.5982 P28072 P28072 210 220 PSMB6 Proteasome subunit beta type-6 yes yes 2 0.00011372 143.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1 1.0485 0.91649 19.823 11 Median 1.0358 0.99972 26.972 4 1 Median 1.0693 0.88363 13.381 4 0 Median 0.89498 0.85981 NaN 1 0 Median 1.1041 0.91649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0485 0.85117 NaN 1 0 Median 234140000 106920000 127230000 107320000 48975000 58343000 106350000 48010000 58344000 13857000 6957200 6900300 4995300 2247800 2747600 0 0 0 1618400 728070 890370 18636 2161 19419 97095;97096;97097;97098;97099;97100;97101;97102;97103;97104;97105 98750;98751;98752;98753;98754;98755;98756;98757;98758;98759;98760;98761;98762;98763;98764 98763 15 LAAIGEATR AARQRAEAERVLAEKLAAIGEATRLKTEAE RVLAEKLAAIGEATRLKTEAEIALKEKEAE K L A T R L 3 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 900.50288 Q15149 Q15149 1976 1984 PLEC Plectin yes yes 2 0.00056667 113.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1.2415 1.1119 6.6627 7 Median 1.0619 1.0574 NaN 1 0 Median 1.3197 1.0562 NaN 1 0 Median 1.0212 1.1119 NaN 1 0 Median 1.3972 1.1939 6.9625 2 0 Median 1.0652 1.1163 NaN 1 0 Median 1.2415 1.0247 NaN 1 0 Median 50083000 21646000 28437000 6325300 2978200 3347100 20167000 8543300 11623000 3616900 1540900 2075900 1705800 735500 970320 4350500 1860800 2489700 13917000 5987300 7930000 18637 2933 19420 97106;97107;97108;97109;97110;97111;97112 98765;98766;98767;98768;98769;98770;98771;98772;98773;98774 98774 10 LAALADQWQFLVQK ERGACAGSEDAVKARLAALADQWQFLVQKS RLAALADQWQFLVQKSAEKSQKLKEANKQQ R L A Q K S 3 0 0 1 0 3 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 14 0 1629.8879 A0A0D9SF54;Q13813 Q13813 1633 1646 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 8.338E-08 99.653 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 1 1.2102 1.1065 23.113 12 Median 1.3991 1.374 7.2992 2 0 Median 1.3649 1.2049 11.442 4 0 Median 0.73057 0.76548 22.48 3 0 Median 1.1544 1.0289 1.9591 2 0 Median 1.106 1.1393 NaN 1 0 Median NaN NaN NaN 0 0 Median 81007000 38380000 42627000 20227000 8679900 11547000 15446000 6506300 8939500 41463000 21363000 20099000 1933100 872810 1060300 1938900 958130 980760 0 0 0 18638 264;2838 19421 97113;97114;97115;97116;97117;97118;97119;97120;97121;97122;97123;97124 98775;98776;98777;98778;98779;98780;98781;98782;98783;98784 98775 10 LAALALASSENSSSTPEECEEMSEKPK LEKQEKKRLKKEKKRLAALALASSENSSST SSTPEECEEMSEKPKKKKKQKPQEVPQENG R L A P K K 4 0 1 0 1 0 6 0 0 0 3 2 1 0 2 6 1 0 0 0 0 0 27 1 2894.3161 O00567 O00567 454 480 NOP56 Nucleolar protein 56 yes yes 3 2.0759E-13 55.469 By MS/MS 2 0.59083 0.64607 15.561 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59083 0.64607 15.561 2 0 Median NaN NaN NaN 0 0 Median 18234000 11497000 6737100 0 0 0 0 0 0 0 0 0 0 0 0 18234000 11497000 6737100 0 0 0 18639 1472 19422 97125;97126 98785;98786;98787 98785 3 LAALASDFSEDMLQEK TRYFAKKKTLLGLSKLAALASDFSEDMLQE AALASDFSEDMLQEKIEEMAEQERFLLHQE K L A E K I 3 0 0 2 0 1 2 0 0 0 3 1 1 1 0 2 0 0 0 0 0 0 16 0 1766.8397 Q8WUM0 Q8WUM0 976 991 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00017035 50.284 By matching By MS/MS By matching By matching 1 2 1 1 0.93156 0.99323 47.541 5 Median 0.93156 0.94581 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96474 1.0177 3.4363 2 0 Median 1.2313 1.034 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38465 0.34773 NaN 1 0 Median 14579000 6936900 7642300 782560 390800 391760 0 0 0 12901000 6151000 6749600 733380 278290 455090 0 0 0 162660 116890 45768 18640 3492 19423 97127;97128;97129;97130;97131 98788 98788 1 LAALEEQR EEDAEAGSEKEEEARLAALEEQRMEGKKPR EKEEEARLAALEEQRMEGKKPRVMAGTLKL R L A Q R M 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 B5MCF9;O00541;B3KXD6;H7C267 B5MCF9 479 486 PES1 Pescadillo homolog yes no 2 0.0030883 101.64 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 3 1 1.0859 1.0011 18.529 8 Median 1.2067 1.2231 NaN 1 0 Median 0.97717 0.846 NaN 1 0 Median 0.77094 0.79327 NaN 1 0 Median 1.4818 1.2598 NaN 1 0 Median 0.91665 0.94911 17.726 3 2 Median 1.2968 1.0559 NaN 1 0 Median 27975000 14453000 13522000 1602200 593520 1008700 5014700 2277400 2737200 6826200 3759600 3066600 360900 138560 222340 12539000 6963900 5575500 1631600 719980 911660 18641 618 19424 97132;97133;97134;97135;97136;97137;97138;97139 98789;98790;98791;98792;98793;98794;98795;98796;98797 98790 9 LAALEQNVER PQRKTTNPLDLAVMRLAALEQNVERRYLRE LAVMRLAALEQNVERRYLREPLWPTHEVVL R L A E R R 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1560 1569 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.00020634 118.18 By MS/MS By MS/MS 1 2 0.59241 0.51019 37.639 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71888 0.74371 NaN 1 1 Median 0.50105 0.42277 26.581 2 1 Median 19800000 13245000 6554900 0 0 0 0 0 0 0 0 0 0 0 0 7697200 4668100 3029000 12103000 8576900 3525800 18642 1065 19425 97140;97141;97142 98798;98799;98800;98801 98798 4 LAALEQNVERR PQRKTTNPLDLAVMRLAALEQNVERRYLRE AVMRLAALEQNVERRYLREPLWPTHEVVLE R L A R R Y 2 2 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1297.7102 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1560 1570 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.00063381 52.278 By MS/MS By MS/MS 1 1 1.3883 1.6229 20.294 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4829 1.8733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2996 1.4059 NaN 1 0 Median NaN NaN NaN 0 0 Median 5561800 2321900 3239800 0 0 0 0 0 0 1618300 583570 1034700 0 0 0 3943500 1738400 2205100 0 0 0 18643 1065 19426 97143;97144 98802;98803 98803 2 LAALNPESNTAGLDIFAK EEFLEAVLCPPRYPKLAALNPESNTAGLDI LNPESNTAGLDIFAKFSAYIKNSNPALNDN K L A A K F 4 0 2 1 0 0 1 1 0 1 3 1 0 1 1 1 1 0 0 0 0 0 18 0 1843.968 O00299 O00299 96 113 CLIC1 Chloride intracellular channel protein 1 yes yes 2 2.858E-08 75.78 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 2 1 1 1 0.92182 0.82636 10.442 12 Median 0.92683 0.84408 2.2047 3 1 Median 0.93154 0.79685 2.594 4 0 Median 0.89857 0.8539 3.7997 2 0 Median 0.95989 0.82147 NaN 1 0 Median 1.1188 1.1408 NaN 1 0 Median 0.90832 0.76373 NaN 1 0 Median 156690000 75698000 80993000 105200000 50450000 54749000 34926000 16927000 17999000 9021100 4729200 4291900 552310 269960 282350 6122000 2921800 3200300 870050 399620 470430 18644 1456 19427 97145;97146;97147;97148;97149;97150;97151;97152;97153;97154;97155;97156 98804;98805;98806;98807;98808;98809;98810;98811;98812;98813 98804 10 LAALNVTEK LSDNASMCLMSIIKKLAALNVTEKDYREII MSIIKKLAALNVTEKDYREIIHRSLLEKLR K L A E K D 2 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 0 957.5495 O75691 O75691 1504 1512 UTP20 Small subunit processome component 20 homolog yes yes 2 0.01772 41.448 By MS/MS 1 1.0692 1.0169 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0692 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1291900 678250 613600 0 0 0 0 0 0 0 0 0 1291900 678250 613600 0 0 0 0 0 0 18645 1691 19428 97157 98814 98814 1 LAALNVTEKDYR LSDNASMCLMSIIKKLAALNVTEKDYREII IKKLAALNVTEKDYREIIHRSLLEKLRKGL K L A Y R E 2 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 12 1 1391.7409 O75691 O75691 1504 1515 UTP20 Small subunit processome component 20 homolog yes yes 3 0.0014043 65.395 By MS/MS 2 1.2527 1.5022 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2527 1.5022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6048300 2557900 3490300 0 0 0 0 0 0 6048300 2557900 3490300 0 0 0 0 0 0 0 0 0 18646 1691 19429 97158;97159 98815;98816 98816 2 LAALPENPPAIDWAYYK IASSLKSWNETLTSRLAALPENPPAIDWAY ALPENPPAIDWAYYKANVAKAGLVDDFEKK R L A Y K A 4 0 1 1 0 0 1 0 0 1 2 1 0 0 3 0 0 1 2 0 0 0 17 0 1930.9829 O75947;F5H608 O75947 42 58 ATP5H ATP synthase subunit d, mitochondrial yes no 2 6.0823E-07 86.814 By matching By MS/MS By matching 1 1 1 0.88188 0.75697 22.292 3 Median 0.62712 0.59113 NaN 1 0 Median 0.88188 0.75697 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1464 0.92238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6547900 3397100 3150700 1701600 966370 735210 4721300 2369000 2352200 0 0 0 125020 61748 63268 0 0 0 0 0 0 18647 1711 19430 97160;97161;97162 98817;98818 98817 2 LAALPNVYEVISK FAGAVSPQEEEEFRRLAALPNVYEVISKSI RRLAALPNVYEVISKSIAPSIFGGTDMKKA R L A S K S 2 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 1 2 0 0 13 0 1415.8024 P33992;B1AHB1 P33992 325 337 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 6.6201E-07 104.79 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 7 2 2 3 1.0218 0.91869 34.536 22 Median 0.77944 0.76744 7.0282 4 0 Median 1.1355 0.98728 11.596 4 0 Median 0.83635 0.86337 16.923 7 0 Median 1.09 0.93394 1.8888 2 0 Median 0.96136 0.95817 7.6289 2 0 Median 1.3734 1.1553 75.678 3 0 Median 120920000 63185000 57735000 30076000 16332000 13744000 47434000 23094000 24340000 39476000 21895000 17581000 413370 212840 200530 1877400 987500 889930 1642700 664160 978560 18648 2224 19431 97163;97164;97165;97166;97167;97168;97169;97170;97171;97172;97173;97174;97175;97176;97177;97178;97179;97180;97181;97182;97183;97184 98819;98820;98821;98822;98823;98824;98825;98826;98827;98828;98829;98830;98831;98832;98833;98834;98835;98836;98837 98823 19 LAALSASLAR GEGTYALDSESCMEKLAALSASLARVVVPA SCMEKLAALSASLARVVVPATEEEAEVDEF K L A A R V 4 1 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 971.57638 B5MCF9;O00541;B3KXD6 B5MCF9 259 268 PES1 Pescadillo homolog yes no 2 0.00033827 88.948 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 3 1.2706 1.103 17.583 10 Median 1.8883 1.809 NaN 1 0 Median 1.3844 1.1977 NaN 1 0 Median 0.92464 0.93422 NaN 1 0 Median 1.3053 1.0903 NaN 1 0 Median 1.1072 1.0984 1.8878 3 0 Plateau 1.4078 1.1383 9.3055 3 0 Median 106280000 47438000 58842000 8084200 2789500 5294800 10236000 3976600 6258900 25311000 13128000 12184000 2116800 834490 1282300 37329000 17052000 20276000 23204000 9657900 13546000 18649 618 19432 97185;97186;97187;97188;97189;97190;97191;97192;97193;97194 98838;98839;98840;98841;98842;98843;98844;98845;98846;98847;98848;98849;98850 98841 13 LAALTQGSYLHQR VHGRQQEILGVLVPRLAALTQGSYLHQRVC PRLAALTQGSYLHQRVCWRLVEQVPDRAME R L A Q R V 2 1 0 0 0 2 0 1 1 0 3 0 0 0 0 1 1 0 1 0 0 0 13 0 1456.7787 Q9Y4R8;H3BRS3 Q9Y4R8 238 250 TELO2 Telomere length regulation protein TEL2 homolog yes no 3 3.9878E-05 83.314 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3363 1.1869 22.683 4 Median 1.2249 1.16 NaN 1 0 Median 1.4014 1.2144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5027 1.8011 NaN 1 0 Median 1.2742 1.0911 NaN 1 0 Median 12947000 5930100 7017000 7485700 3361100 4124600 3493400 1583400 1909900 0 0 0 0 0 0 895450 377430 518020 1072600 608100 464460 18650 4447 19433 97195;97196;97197;97198 98851;98852;98853 98851 3 LAAMASIR RIWYLLDGKMQPPGKLAAMASIRLQGLHKP KMQPPGKLAAMASIRLQGLHKPVYHALSDC K L A I R L 3 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 831.46366 Q9BYD1;E5RJI7;E5RFI2 Q9BYD1 31 38 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 0.054645 54.611 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18651 3888 19434 97199 98854 98854 1 LAANAFLAQR EKILTTNTWSSELSKLAANAFLAQRISSIN SELSKLAANAFLAQRISSINSISALCEATG K L A Q R I 4 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 10 0 1073.5982 O60701 O60701 221 230 UGDH UDP-glucose 6-dehydrogenase yes yes 2 6.8378E-06 154.31 By MS/MS 1 1.2253 1.1671 NaN 1 Median 1.2253 1.1671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13349000 6114100 7235300 13349000 6114100 7235300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18652 1627 19435 97200 98855 98855 1 LAANDFFR AAVNLTLVTPEKAIKLAANDFFRHQLSKDG TPEKAIKLAANDFFRHQLSKDGQKLTLLKE K L A F R H 2 1 1 1 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 952.47667 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;K4DIA8;K4DIB8;E9PS95;K4DIB3;K4DIB6;E9PQ36;E9PI74;A0A0D9SG84;K4DIA2;K4DIB0;A0A0D9SFA8;Q9H1K4 Q9H936 84 91 SLC25A22;SLC25A18 Mitochondrial glutamate carrier 1;Mitochondrial glutamate carrier 2 yes no 2 0.013277 72.485 By MS/MS 1 0.9163 0.85725 NaN 1 Median 0.9163 0.85725 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21994000 11633000 10361000 21994000 11633000 10361000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18653 943 19436 97201 98856 98856 1 LAANTLSTPSGSSLQRPK RRGSLSQEMAKGEEKLAANTLSTPSGSSLQ NTLSTPSGSSLQRPKKSGDMTLIPEQEPME K L A P K K 2 1 1 0 0 1 0 1 0 0 3 1 0 0 2 4 2 0 0 0 0 0 18 1 1826.985 Q8NFC6 Q8NFC6 1089 1106 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2;3 1.4495E-13 123.97 By MS/MS By MS/MS 3 2 0.72241 0.7956 15.135 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66388 0.7956 7.2437 3 1 Median 0.91326 0.86602 26.421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41948000 23605000 18342000 0 0 0 0 0 0 36284000 20539000 15745000 5663700 3065800 2597900 0 0 0 0 0 0 18654 3434 19437 97202;97203;97204;97205;97206 98857;98858;98859;98860;98861;98862;98863 98858 7 LAAPLLKR ILLANKKDLEEAEGRLAAPLLKRLSLSTSK LEEAEGRLAAPLLKRLSLSTSKLNSLAIGL R L A K R L 2 1 0 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 0 0 8 1 880.58582 P54886 P54886 418 425 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.012046 62.714 By matching By matching By MS/MS 1 1 1 0.95095 0.96554 20.395 3 Median 0.94999 0.96554 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1657 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95095 0.82848 NaN 1 0 Median 3705200 1585800 2119400 940770 422400 518370 0 0 0 1030400 388740 641690 0 0 0 0 0 0 1734000 774650 959340 18655 2488 19438 97207;97208;97209 98864 98864 1 LAAQENRPVTDHLDEQAVQGLK GSILACAEVAYALYKLAAQENRPVTDHLDE PVTDHLDEQAVQGLKQIHQQLYDRQLYRGL K L A L K Q 3 1 1 2 0 3 2 1 1 0 3 1 0 0 1 0 1 0 0 2 0 0 22 1 2431.2456 Q9BTW9;J3KR97;I3L439;I3L0V3;I3L163;I3L143;I3L131;I3L500;I3L3H4;I3L1S3;I3L4D2 Q9BTW9 635 656 TBCD Tubulin-specific chaperone D yes no 3 3.3104E-12 65.784 By MS/MS By matching 1 1 0.91924 0.9124 37.285 2 Median 0.67254 0.70095 NaN 1 0 Median 1.2564 1.1876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16448000 8204600 8243000 13867000 7102200 6764800 2580600 1102400 1478200 0 0 0 0 0 0 0 0 0 0 0 0 18656 1324 19439 97210;97211 98865 98865 1 LAAQFIPK QVILDGVKGGTKEKRLAAQFIPKFFKHFPE GGTKEKRLAAQFIPKFFKHFPELADSAINA R L A P K F 2 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 8 0 886.52764 G3V1C3;Q9BZZ5;E9PQK6 G3V1C3 44 51 API5 Apoptosis inhibitor 5 yes no 2 0.0034678 94.407 By MS/MS By matching By MS/MS By MS/MS 3 1 3 4 1.0626 0.99348 16.319 11 Median 1.0937 1.0579 14.289 3 0 Plateau 1.1996 1.061 NaN 1 0 Median 0.99736 0.99348 9.1701 3 0 Median 1.1935 1.012 24.381 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202960000 104800000 98159000 47120000 24109000 23010000 11305000 5409100 5896000 110920000 59753000 51164000 33619000 15530000 18090000 0 0 0 0 0 0 18657 1103 19440 97212;97213;97214;97215;97216;97217;97218;97219;97220;97221;97222 98866;98867;98868;98869;98870;98871;98872;98873 98869 8 LAAQSCALSLVR LGRRIFAREHGSNKKLAAQSCALSLVRQLY NKKLAAQSCALSLVRQLYHLGVVEAYSGLT K L A V R Q 3 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 12 0 1287.6969 Q08211 Q08211 237 248 DHX9 ATP-dependent RNA helicase A yes yes 2 6.1328E-06 117.7 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 1.2587 1.1698 20.37 9 Median NaN NaN NaN 0 0 Median 1.059 0.88493 41.559 2 0 Median 1.0832 1.1912 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2587 1.278 7.1329 3 2 Plateau 1.6048 1.3079 8.3562 3 2 Plateau 66386000 28881000 37504000 0 0 0 25252000 10698000 14554000 9614900 4645800 4969200 0 0 0 27143000 11736000 15407000 4376600 1802100 2574500 18658 2736 19441 97223;97224;97225;97226;97227;97228;97229;97230;97231 98874;98875;98876;98877;98878;98879;98880;98881;98882;98883;98884 98874 11 LAAQSLDTSGLR RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL R L A L R H 2 1 0 1 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1230.6568 P07199 P07199 299 310 CENPB Major centromere autoantigen B yes yes 2 1.963E-07 121.83 By MS/MS By MS/MS By MS/MS 1 2 2 1.1017 1.0122 25.41 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.712 0.7244 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.86796 0.87522 33.036 2 1 Median 1.3283 1.1098 13.013 2 1 Median 41167000 19861000 21306000 0 0 0 0 0 0 12369000 6084800 6283900 0 0 0 20972000 10937000 10035000 7826600 2839300 4987300 18659 1882 19442 97232;97233;97234;97235;97236 98885;98886;98887;98888;98889 98885 5 LAAQSQHVGFAR SPTSISSSAAAGLQRLAAQSQHVGFARSVV LQRLAAQSQHVGFARSVVKLKCQHCNRLFA R L A A R S 3 1 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 12 0 1283.6735 Q5VZL5;H7C1I7 Q5VZL5 669 680 ZMYM4 Zinc finger MYM-type protein 4 yes no 3 0.0002198 60.598 By MS/MS 2 1.2 1.3129 5.5037 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2 1.3129 5.5037 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6205500 2751800 3453700 0 0 0 0 0 0 6205500 2751800 3453700 0 0 0 0 0 0 0 0 0 18660 3117 19443 97237;97238 98890;98891 98890 2 LAARPYSATAAAATGGMANVK IERKRQRALMLRQARLAARPYSATAAAATG SATAAAATGGMANVKAAPKIIDTGGGFILE R L A V K A 8 1 1 0 0 0 0 2 0 0 1 1 1 0 1 1 2 0 1 1 0 0 21 1 1991.0258 F2Z2T2;P23025 F2Z2T2 43 63 XPA DNA repair protein complementing XP-A cells yes no 3 8.3211E-05 58.073 By matching By MS/MS 1 2 0.85381 0.85047 13.334 3 Plateau 0.85381 0.85142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72092 0.68034 4.4936 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8338900 4794200 3544700 4763700 2609700 2154000 0 0 0 0 0 0 3575200 2184500 1390700 0 0 0 0 0 0 18661 990 19444;19445 97239;97240;97241 98892;98893 98893 342 2 LAASASTQQLQEVK HQQSGSELALRRSQRLAASASTQQLQEVKA RLAASASTQQLQEVKAKLQQCKAELNSTTE R L A V K A 3 0 0 0 0 3 1 0 0 0 2 1 0 0 0 2 1 0 0 1 0 0 14 0 1472.7835 O95235 O95235 680 693 KIF20A Kinesin-like protein KIF20A yes yes 2 1.6134E-05 131.83 By MS/MS By matching By MS/MS 1 1 1 1.1215 1.2311 24.599 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1215 1.2311 NaN 1 0 Median 0.91456 0.77268 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0301 0.85032 NaN 1 0 Median 10522000 4857000 5664700 0 0 0 0 0 0 6921500 3138600 3783000 1734100 788720 945370 0 0 0 1866100 929680 936390 18662 1756 19446 97242;97243;97244 98894;98895;98896 98895 3 LAASFQSMEVR KISNIIKQFKLSCSKLAASFQSMEVRNSNF SCSKLAASFQSMEVRNSNFAAFIDIFTSNT K L A V R N 2 1 0 0 0 1 1 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 11 0 1237.6125 Q7L523;Q5VZM2 Q7L523 245 255 RRAGA;RRAGB Ras-related GTP-binding protein A;Ras-related GTP-binding protein B yes no 2 1.6768E-05 99.815 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18663 3223 19447 97245 98897 98897 1 LAASGEGGLQELSGHFENQK DWALYTYEDGSDDLKLAASGEGGLQELSGH EGGLQELSGHFENQKVMYGFCSVKDSQAAL K L A Q K V 2 0 1 0 0 2 3 4 1 0 3 1 0 1 0 2 0 0 0 0 0 0 20 0 2070.997 Q16643;D6RFI1 Q16643 43 62 DBN1 Drebrin yes no 2;3 2.1834E-19 116.29 By MS/MS By matching By MS/MS 3 1 2 0.89262 0.86202 42.518 6 Median 1.0216 0.98118 19.242 3 0 Median 1.0107 0.88859 NaN 1 0 Median 0.4731 0.52476 65.898 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77110000 38756000 38354000 48155000 23511000 24644000 3147100 1534800 1612300 25808000 13710000 12098000 0 0 0 0 0 0 0 0 0 18664 2991 19448 97246;97247;97248;97249;97250;97251 98898;98899;98900;98901;98902;98903;98904 98903 7 LAASIAPEIYGHEDVKK REELRQIAEEDFYEKLAASIAPEIYGHEDV ASIAPEIYGHEDVKKALLLLLVGGVDQSPR K L A K K A 3 0 0 1 0 0 2 1 1 2 1 2 0 0 1 1 0 0 1 1 0 0 17 1 1839.9731 P33993 P33993 336 352 MCM7 DNA replication licensing factor MCM7 yes yes 3;4 4.6163E-06 76.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 1 0.86537 0.93644 28.929 10 Median 0.84364 0.86343 41.996 3 0 Median 1.1324 1.0968 9.3144 2 1 Median 0.6871 0.75311 22.803 3 0 Median 1.2242 1.1959 NaN 1 0 Median 0.64455 0.72206 NaN 1 0 Median NaN NaN NaN 0 0 Median 192170000 110080000 82091000 69858000 36428000 33430000 22245000 10589000 11655000 91643000 58403000 33240000 2422700 1034700 1387900 6006800 3627600 2379200 0 0 0 18665 2225 19449 97252;97253;97254;97255;97256;97257;97258;97259;97260;97261 98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915;98916 98906 12 LAATNALLNSLEFTK IIQGMRKEEPSNNVKLAATNALLNSLEFTK LAATNALLNSLEFTKANFDKESERHFIMQV K L A T K A 3 0 2 0 0 0 1 0 0 0 4 1 0 1 0 1 2 0 0 0 0 0 15 0 1604.8774 Q14974;J3KTM9 Q14974 192 206 KPNB1 Importin subunit beta-1 yes no 2 5.1586E-122 226.73 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 4 2 4 4 1.3345 1.181 119.42 23 Median 1.1053 1.0118 208.29 4 1 Median 1.3315 1.1713 193.88 5 3 Median 1.2368 1.2651 13.028 4 0 Median 1.3909 1.1979 2.0121 2 0 Median 1.4252 1.4078 14.675 4 0 Median 1.4251 1.1473 6.9557 4 0 Linear 2111000000 845100000 1265900000 152450000 41220000 111230000 1667400000 673010000 994360000 106980000 49735000 57249000 21571000 9105900 12465000 52049000 22715000 29333000 110540000 49315000 61230000 18666 2904 19450 97262;97263;97264;97265;97266;97267;97268;97269;97270;97271;97272;97273;97274;97275;97276;97277;97278;97279;97280;97281;97282;97283;97284 98917;98918;98919;98920;98921;98922;98923;98924;98925;98926;98927;98928;98929;98930;98931;98932;98933;98934;98935;98936;98937;98938;98939;98940;98941;98942;98943;98944;98945;98946;98947 98945 30 LAAVALINAAIQK GVDAANSAAQQYQRRLAAVALINAAIQKGV RRLAAVALINAAIQKGVAEKTVLELMNPEA R L A Q K G 5 0 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 13 0 1294.7973 P46940;A0A0J9YXZ5 P46940 389 401 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.145E-07 135.79 By matching By MS/MS By MS/MS By matching 4 3 1 1 1.1251 1.0799 14.769 9 Median 1.1216 1.095 17.372 4 0 Median 1.1251 0.99764 7.5644 3 0 Median 1.2448 1.3826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2392 1.0789 NaN 1 0 Median 38524000 17498000 21027000 21956000 10007000 11949000 14730000 6622000 8108500 1716600 811330 905270 0 0 0 0 0 0 121160 57587 63571 18667 2350 19451 97285;97286;97287;97288;97289;97290;97291;97292;97293 98948;98949;98950 98950 3 LAAVAQDEEENASR VINTMLQLSPEEKGKLAAVAQDEEENASRS KLAAVAQDEEENASRSSG____________ K L A S R S 4 1 1 1 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 14 0 1501.7009 Q99666 Q99666 1749 1762 RGPD5 RANBP2-like and GRIP domain-containing protein 5/6 yes yes 2 6.5451E-08 119.45 By MS/MS By matching 1 1 0.90467 0.89261 46.024 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1156 1.2359 NaN 1 0 Median 0.73359 0.64466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4156600 1929900 2226700 0 0 0 0 0 0 3529000 1564600 1964400 627550 365240 262310 0 0 0 0 0 0 18668 3762 19452 97294;97295 98951;98952 98952 2 LAAVAQGEEENASR VINTMLQLSPEEKGKLAAVAQGEEENASRS KLAAVAQGEEENASRSSGWASYLHSWSGLR K L A S R S 4 1 1 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 14 0 1443.6954 Q8IWJ2 Q8IWJ2 1656 1669 GCC2 GRIP and coiled-coil domain-containing protein 2 yes yes 2 1.1647E-06 97.456 By MS/MS By MS/MS 1 1 0.97194 0.88683 26.396 2 Median 0.73406 0.73584 NaN 1 0 Median 1.2869 1.0688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2446300 1189600 1256700 1042500 592840 449620 1403900 596810 807050 0 0 0 0 0 0 0 0 0 0 0 0 18669 3326 19453 97296;97297 98953;98954;98955;98956 98956 4 LAAVDATVNQVLASR AAASEVKEQTKGKVKLAAVDATVNQVLASR LAAVDATVNQVLASRYGIRGFPTIKIFQKG K L A S R Y 4 1 1 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 15 0 1526.8417 Q15084 Q15084 217 231 PDIA6 Protein disulfide-isomerase A6 yes yes 2;3 1.0951E-19 190.53 By MS/MS By MS/MS By MS/MS By MS/MS 3 6 1 2 1.3381 1.196 14.031 12 Median 1.2091 1.1207 4.9212 3 0 Median 1.3996 1.196 13.178 6 0 Median 1.1511 1.1206 NaN 1 0 Median 1.77 1.5113 6.0909 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 476790000 203220000 273570000 86767000 37896000 48871000 346590000 147550000 199040000 37037000 15459000 21578000 6397600 2314500 4083100 0 0 0 0 0 0 18670 2927 19454 97298;97299;97300;97301;97302;97303;97304;97305;97306;97307;97308;97309 98957;98958;98959;98960;98961;98962;98963;98964;98965;98966;98967;98968;98969;98970;98971;98972;98973 98963 17 LAAVDVSAR GILDEQAVQGLREGRLAAVDVSARAEVRRY GLREGRLAAVDVSARAEVRRYLEGTGSVAG R L A A R A 3 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 900.50288 P58107;A0A075B730 P58107 266 274 EPPK1 Epiplakin yes no 2 0.00089695 91.853 By MS/MS By matching By MS/MS 2 2 1 1.6313 1.3277 25.699 5 Median 1.8536 1.8576 0.004109 2 0 Median 1.4006 1.1542 17.322 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6313 1.3277 NaN 1 0 Median 29041000 12297000 16744000 6959900 2291100 4668700 20960000 9551500 11409000 0 0 0 0 0 0 0 0 0 1120600 454250 666360 18671 2520 19455 97310;97311;97312;97313;97314 98974;98975;98976 98975 3 LAAVQLLQFLAPK SEVTAVFTDKDANVRLAAVQLLQFLAPKIR VRLAAVQLLQFLAPKIRAEQISPFFPLVSA R L A P K I 3 0 0 0 0 2 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 13 0 1410.8599 Q9NXF1 Q9NXF1 116 128 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.00053326 71.223 By matching By MS/MS By MS/MS 2 3 2 1.0594 1.0568 22.428 7 Median 1.3337 1.336 11.708 2 0 Median NaN NaN NaN 0 0 Median 0.90986 1.0003 24.101 3 0 Median NaN NaN NaN 0 0 Median 1.0416 1.0393 2.3643 2 0 Median NaN NaN NaN 0 0 Median 13255000 6777100 6477600 474810 225590 249220 0 0 0 6750400 3575600 3174800 0 0 0 6029600 2975900 3053600 0 0 0 18672 4163 19456 97315;97316;97317;97318;97319;97320;97321 98977;98978;98979;98980;98981;98982;98983;98984;98985 98979 9 LAAVTYNGVDNNK DVTNNVHYENYRSRKLAAVTYNGVDNNKNK RKLAAVTYNGVDNNKNKGQLTKSPLAQMEE K L A N K N 2 0 3 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 1 2 0 0 13 0 1377.6888 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 294 306 SEPT7 Septin-7 yes no 2 1.244E-24 145.34 By MS/MS By MS/MS 1 3 1.208 1.063 15.679 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.208 1.063 15.679 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44977000 19155000 25822000 0 0 0 0 0 0 0 0 0 44977000 19155000 25822000 0 0 0 0 0 0 18673 870 19457 97322;97323;97324;97325 98986;98987;98988;98989 98986 4 LAAVVGVER TWTCTVLYSKYDAQRLAAVVGVERAAQMLQ KYDAQRLAAVVGVERAAQMLQSNKNVHLFI R L A E R A 2 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 912.53927 Q68CQ4 Q68CQ4 729 737 DIEXF Digestive organ expansion factor homolog yes yes 2 0.0071919 52.255 By matching By MS/MS By matching By matching 1 1 1 1 1.2343 1.1108 11.801 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2652 1.3569 NaN 1 0 Median 1.3033 1.1232 NaN 1 0 Median 1.0907 1.0986 NaN 1 0 Median 1.2042 1.0316 NaN 1 0 Median 13449000 6038900 7410500 0 0 0 0 0 0 3602800 1633800 1969000 6484900 2877800 3607200 2341300 1069200 1272100 1020500 458180 562280 18674 3123 19458 97326;97327;97328;97329 98990 98990 1 LAAVVSACK AVNLYGPDAQVDRSRLAAVVSACKQLHRAG QVDRSRLAAVVSACKQLHRAGLLHNILPSQ R L A C K Q 3 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 917.50044 P78527 P78527 1448 1456 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0022552 73.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.2833 1.1118 24.447 5 Median NaN NaN NaN 0 0 Median 1.3134 1.1497 4.7467 2 0 Median 0.74602 0.81143 NaN 1 0 Median 1.2856 1.1915 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83884 0.70129 NaN 1 0 Median 15366000 6920300 8445500 0 0 0 11615000 4653200 6962100 2839000 1822700 1016300 555100 241590 313510 0 0 0 356510 202870 153650 18675 2647 19459 97330;97331;97332;97333;97334;97335 98991;98992;98993;98994;98995 98992 5 LAAYAQYQATLQNQAK TKKAKVLQKQPLVAKLAAYAQYQATLQNQA AAYAQYQATLQNQAKTKAAVSMEGFSWGNY K L A A K T 5 0 1 0 0 4 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 16 0 1780.9108 Q05BQ5 Q05BQ5 116 131 MBTD1 MBT domain-containing protein 1 yes yes 2 0.0034488 48.004 By MS/MS 1 1.273 1.3256 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.273 1.3256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6229100 2731100 3498000 0 0 0 0 0 0 6229100 2731100 3498000 0 0 0 0 0 0 0 0 0 18676 2719 19460 97336 98996 98996 1 LACDVDQVTR PMYQLYKRTFPVLLRLACDVDQVTRQLYEP PVLLRLACDVDQVTRQLYEPLVMQLIHWFT R L A T R Q 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1175.5605 P78527 P78527 972 981 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00037209 121.73 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1.5703 1.256 29.944 5 Median NaN NaN NaN 0 0 Median 1.5272 1.2507 0.59728 2 0 Median 0.98484 1.0358 NaN 1 0 Median 1.7768 1.5483 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.725 2.2684 NaN 1 1 Median 50957000 20891000 30065000 0 0 0 26898000 10250000 16648000 16664000 8048200 8615800 5334100 1895000 3439100 0 0 0 2060900 698400 1362500 18677 2647 19461 97337;97338;97339;97340;97341;97342 98997;98998;98999;99000;99001;99002;99003 98997 7 LADALQELR LVEIDNGKQREFESRLADALQELRAQHEDQ REFESRLADALQELRAQHEDQVEQYKKELE R L A L R A 2 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1027.5662 P02545;H0YAB0;Q3BDU5 P02545 241 249 LMNA Prelamin-A/C;Lamin-A/C no no 2 3.6966E-23 198.07 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 4 1.3819 1.253 59.969 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1509 1.1374 NaN 1 0 Median 2.6657 2.2715 98.703 4 0 Median 1.2511 1.2592 11.036 5 0 Median 1.5029 1.227 13.545 4 1 Median 943100000 387090000 556010000 0 0 0 0 0 0 262640000 115040000 147600000 145240000 39968000 105270000 495840000 216530000 279310000 39391000 15547000 23844000 18678 1834;3010 19462 97343;97344;97345;97346;97347;97348;97349;97350;97351;97352;97353;97354;97355;97356;97357;97358 99004;99005;99006;99007;99008;99009;99010;99011;99012;99013;99014;99015;99016;99017;99018;99019;99020;99021;99022;99023;99024;99025;99026;99027 99009 24 LADDLSTLQEK RALQQVQEKEVRAQKLADDLSTLQEKMAAT RAQKLADDLSTLQEKMAATSKEVARLETLV K L A E K M 1 0 0 2 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1231.6296 A0A087WY61;Q14980 Q14980 898 908 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.9172E-12 154.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.129 1.0079 9.4423 6 Median NaN NaN NaN 0 0 Median 1.1058 0.97949 NaN 1 1 Median 1.0446 1.1331 14.797 2 0 Median 1.1527 1.0318 NaN 1 0 Median 0.94843 0.99551 NaN 1 0 Median 1.1562 0.98993 NaN 1 0 Median 387510000 188060000 199450000 0 0 0 14436000 6697600 7738000 212230000 104410000 107830000 21330000 9097800 12232000 120610000 59652000 60957000 18900000 8204000 10696000 18679 2905;77 19463 97359;97360;97361;97362;97363;97364 99028;99029;99030;99031;99032;99033;99034;99035;99036;99037;99038 99034 11 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR TGRLEILQIHTKNMKLADDVDLEQVANETH DLAALCSEAALQAIRKKMDLIDLEDETIDA K L A I R K 8 1 1 4 1 2 3 2 2 1 5 0 0 0 0 1 1 0 0 3 0 0 35 0 3671.785 P55072 P55072 390 424 VCP Transitional endoplasmic reticulum ATPase yes yes 4 3.1611E-16 57.78 By MS/MS 1 0.8056 0.69618 NaN 1 Median NaN NaN NaN 0 0 Median 0.8056 0.69618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8315100 4138800 4176200 0 0 0 8315100 4138800 4176200 0 0 0 0 0 0 0 0 0 0 0 0 18680 2494 19464 97365 99039;99040 99040 2 LADFGLAK LKPNNLLLDENGVLKLADFGLAKSFGSPNR DENGVLKLADFGLAKSFGSPNRAYTHQVVT K L A A K S 2 0 0 1 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 833.4647 P50613;D6REC6;D6R9G1;D6RAD4;A0A1B0GTZ4;Q9C098 P50613 153 160 CDK7;DCLK3 Cyclin-dependent kinase 7;Serine/threonine-protein kinase DCLK3 yes no 2 0.028842 40.103 By MS/MS 1 0.99347 0.95019 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99347 0.95019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3388000 1672000 1716000 0 0 0 0 0 0 3388000 1672000 1716000 0 0 0 0 0 0 0 0 0 18681 2419 19465 97366 99041 99041 1 LADFGLAR LKPQNLLIDDKGTIKLADFGLARAFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEVVT K L A A R A 2 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 861.47085 Q9NYV4;J3QSD7;A0A2R8YEB7;Q9BVE2;A0A2R8Y4Z0;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;A0A087X209;Q14004;A0A2R8Y644;H0YAZ9;A0A087WZU2;E5RGN0;Q96Q40;O94921;F5H6Z0;Q07002;Q00536;Q00537;Q00534;E7EUK8;G3V5T9;P24941;E7ESI2;Q00526;K7ELV5;K7EJ83;P06493;A0A024QZP7;A0A087WZZ9;E5RIU6;P11802;F8VYH9;F8VTV8;F8VWX7;F8VZZ0;F8VZ51;F8VXD2;P50750;Q00535 P06493 144 151 CDK12;CDK13;CDK16;CDK15;CDK14;CDK17;CDK18;CDK6;CDK2;CDK3;CDK1;CDC2;CDK4;CDK9;CDK5 Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 6;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3;Cyclin-dependent kinase 1;Cyclin-dependent kinase 4;Cyclin-dependent kinase 9;Cyclin-dependent-like kinase 5 no no 2 0.00030885 128.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 3 2 1.1649 0.99456 20.489 15 Median 1.4009 1.3262 23.557 4 0 Linear 1.1774 0.98438 9.5875 4 0 Median 1.2095 1.1745 15.829 3 0 Median 1.2404 1.042 13.277 2 1 Median 1.2433 1.2749 35.118 2 0 Median NaN NaN NaN 0 0 Median 222620000 103960000 118660000 116560000 55775000 60790000 36627000 16602000 20025000 40269000 18608000 21661000 15216000 6990300 8225200 13943000 5988300 7954600 0 0 0 18682 1871;1120;1971;4180;2422;2675 19466 97367;97368;97369;97370;97371;97372;97373;97374;97375;97376;97377;97378;97379;97380;97381;97382 99042;99043;99044;99045;99046;99047;99048;99049;99050;99051;99052;99053;99054;99055;99056 99056 15 LADFGVAGQLTDTMAK IKAGNILLNTEGHAKLADFGVAGQLTDTMA ADFGVAGQLTDTMAKRNTVIGTPFWMAPEV K L A A K R 3 0 0 2 0 1 0 2 0 0 2 1 1 1 0 0 2 0 0 1 0 0 16 0 1636.8131 Q13043;A0A087WVN8;Q13188 Q13043 165 180 STK4;STK3 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit yes no 3 0.054773 10.467 By MS/MS 1 0.97983 0.83217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97983 0.83217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2086900 1070300 1016600 0 0 0 0 0 0 0 0 0 2086900 1070300 1016600 0 0 0 0 0 0 18683 2780 19467 97383 99057 99057 1 LADFGVAGQLTDTQIK IKAANVLLSEQGDVKLADFGVAGQLTDTQI ADFGVAGQLTDTQIKRNTFVGTPFWMAPEV K L A I K R 2 0 0 2 0 2 0 2 0 1 2 1 0 1 0 0 2 0 0 1 0 0 16 0 1675.8781 H0Y630;B4DR80;Q9Y6E0;Q8NBY1;B4E0Y9;Q9P289;C9JJV0 Q8NBY1 160 175 STK24;STK26;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 no no 2 4.8463E-06 73.848 By MS/MS By MS/MS By matching 1 3 1 1.0335 1.0217 20.776 5 Median 1.3026 1.2525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92562 1.0217 21.454 3 1 Median 1.0335 0.90264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12026000 5843800 6182600 2578300 1149000 1429300 0 0 0 8944700 4442900 4501900 503340 251970 251370 0 0 0 0 0 0 18684 602;612 19468 97384;97385;97386;97387;97388 99058;99059 99059 2 LADFGVAGQLTDTQIKR IKAANVLLSEQGDVKLADFGVAGQLTDTQI DFGVAGQLTDTQIKRNTFVGTPFWMAPEVI K L A K R N 2 1 0 2 0 2 0 2 0 1 2 1 0 1 0 0 2 0 0 1 0 0 17 1 1831.9792 H0Y630;B4DR80;Q9Y6E0;Q8NBY1;B4E0Y9;Q9P289;C9JJV0 Q8NBY1 160 176 STK24;STK26;STK25 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 no no 3 5.2673E-06 67.605 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.1122 1.1275 37.175 7 Median 1.0498 1.0841 6.7453 2 0 Median NaN NaN NaN 0 0 Median 0.96974 1.032 12.519 2 0 Median 1.4261 1.3807 NaN 1 0 Median 2.7246 2.8098 NaN 1 0 Median 1.1443 1.0521 NaN 1 0 Median 42427000 19077000 23350000 22276000 10871000 11405000 0 0 0 13464000 6144200 7319800 636170 275710 360460 5504300 1525900 3978500 545750 259910 285840 18685 602;612 19469 97389;97390;97391;97392;97393;97394;97395 99060;99061;99062;99063;99064 99062 5 LADFGVLHR MFDHRPRSWRELPLRLADFGVLHRNELSGA RELPLRLADFGVLHRNELSGALTGLTRVRR R L A H R N 1 1 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1026.5611 P26639 P26639 434 442 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 1.305E-10 173.88 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1657 1.099 21.918 6 Median 1.2536 1.185 NaN 1 0 Median 0.98513 0.84367 23.178 2 0 Median 1.2195 1.266 7.3138 2 1 Median 1.1826 1.0193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117800000 53004000 64792000 51056000 22215000 28841000 30077000 13897000 16180000 25744000 11864000 13880000 10918000 5027500 5890400 0 0 0 0 0 0 18686 2147 19470 97396;97397;97398;97399;97400;97401 99065;99066;99067;99068;99069;99070;99071 99065 7 LADFGVSAK LKAGNILFTLDGDIKLADFGVSAKNTRTIQ LDGDIKLADFGVSAKNTRTIQRRDSFIGTP K L A A K N 2 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 9 0 906.48108 Q9H2G2;O94804 Q9H2G2 171 179 SLK;STK10 STE20-like serine/threonine-protein kinase;Serine/threonine-protein kinase 10 no no 2 0.0058853 56.258 By matching By MS/MS By matching 1 2 1 1.0573 0.92516 4.676 4 Median 0.96742 0.92992 NaN 1 0 Median 1.0926 0.95258 4.8577 2 0 Median NaN NaN NaN 0 0 Median 1.0395 0.87994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7999100 3930400 4068700 3209900 1585900 1624000 4267900 2054300 2213500 0 0 0 521340 290100 231230 0 0 0 0 0 0 18687 3942;1725 19471 97402;97403;97404;97405 99072;99073 99073 2 LADHFGGK EVCSAYLGLHDNDRRLADHFGGKLHLGFIE LHDNDRRLADHFGGKLHLGFIEIREKLEEL R L A G K L 1 0 0 1 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 843.4239 A0A0A6YYJ8;Q9NQ29;A8MYV2;B8ZZ10;Q9Y383 A0A0A6YYJ8 272 279 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.055756 33.516 By MS/MS By matching By matching 2 1 1 1.2221 1.1467 5.3135 4 Median NaN NaN NaN 0 0 Median 1.333 1.1636 8.1504 2 0 Median 1.0711 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1889 1.1798 NaN 1 0 Median NaN NaN NaN 0 0 Median 3143800 1443800 1700000 0 0 0 1807400 792150 1015200 794050 394390 399660 0 0 0 542330 257230 285100 0 0 0 18688 206;4407;4058 19472 97406;97407;97408;97409 99074 99074 1 LADIIHHWNANR ______________________________ RRKLADIIHHWNANRLDLFEISQPTEDLEF K L A N R L 2 1 2 1 0 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 0 0 12 0 1458.748 J3KN01;P55196;Q5TIG5;F8W9I4;E9PFY5 J3KN01 13 24 MLLT4 Afadin yes no 3 0.01726 38.634 By MS/MS 1 1.3335 1.1371 NaN 1 Median NaN NaN NaN 0 0 Median 1.3335 1.1371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 839210 356080 483130 0 0 0 839210 356080 483130 0 0 0 0 0 0 0 0 0 0 0 0 18689 1300 19473 97410 99075 99075 1 LADINYEGR PTDKTSRCLIKSPDRLADINYEGRLEAVSR IKSPDRLADINYEGRLEAVSRKQGAQFKEY R L A G R L 1 1 1 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1049.5142 P52948;A0A3B3ITD8 P52948 843 851 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00013986 141.39 By MS/MS By MS/MS 1 2 1.1519 1.101 3.7446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0664 1.1305 NaN 1 0 Median 1.2441 1.0722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21857000 10197000 11660000 0 0 0 0 0 0 15746000 7327300 8418300 6111300 2869800 3241500 0 0 0 0 0 0 18690 2462 19474 97411;97412;97413 99076;99077;99078;99079 99078 4 LADIQIEQLNR TELQAKVIDTQQKVKLADIQIEQLNRTKKH QKVKLADIQIEQLNRTKKHAHLTDTEIMTL K L A N R T 1 1 1 1 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1311.7147 O60925;E5RGS4 O60925 29 39 PFDN1 Prefoldin subunit 1 yes no 2 2.9936E-06 158.76 By MS/MS By MS/MS By MS/MS 1 1 1 1.1478 1.0401 7.9201 3 Plateau 1.0907 1.0565 NaN 1 0 Median 1.1897 1.0144 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1478 0.90666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62505000 28816000 33689000 34356000 16332000 18023000 27456000 12182000 15274000 0 0 0 693460 301400 392060 0 0 0 0 0 0 18691 841 19475 97414;97415;97416 99080;99081;99082;99083;99084;99085 99080 6 LADKVNSSWQR AVPNLFMLETVDSVKLADKVNSSWQRKGSP DSVKLADKVNSSWQRKGSPERLKVMVQINT K L A Q R K 1 1 1 1 0 1 0 0 0 0 1 1 0 0 0 2 0 1 0 1 0 0 11 1 1302.668 O94903;E5RFX7;E5RG77;H0YBG2 O94903 122 132 PROSC Proline synthase co-transcribed bacterial homolog protein yes no 3 0.0029088 39.266 By MS/MS 1 1.0067 1.0028 NaN 1 Median 1.0067 1.0028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4152600 1824500 2328100 4152600 1824500 2328100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18692 1734 19476 97417 99086 99086 1 LADKYEEAKEK YCREERKSLREMAERLADKYEEAKEKQEDI MAERLADKYEEAKEKQEDIMNRMKKLLHSF R L A E K Q 2 0 0 1 0 0 3 0 0 0 1 3 0 0 0 0 0 0 1 0 0 0 11 2 1322.6718 Q99567;J3KMX1;I3L4K7 Q99567 622 632 NUP88 Nuclear pore complex protein Nup88 yes no 3 0.063168 14.876 By matching By MS/MS By matching 1 2 1 0.80971 0.91927 20.251 4 Median 0.71179 0.69547 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8794 1.0443 10.665 2 0 Median NaN NaN NaN 0 0 Median 0.78266 0.87256 NaN 1 0 Median NaN NaN NaN 0 0 Median 1885500 1001400 884080 150520 74031 76485 0 0 0 1512100 796040 716040 0 0 0 222920 131370 91555 0 0 0 18693 3753 19477 97418;97419;97420;97421 99087 99087 1 LADLEALK LGPMVYAICYCPLPRLADLEALKVADSKTL CYCPLPRLADLEALKVADSKTLLESERERL R L A L K V 2 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 871.50148 O75792;A0A2R8Y658;A0A2R8Y606 O75792 57 64 RNASEH2A Ribonuclease H2 subunit A yes no 2 0.010415 58.917 By MS/MS 1 1.14 0.95595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.14 0.95595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9265400 4050400 5215000 0 0 0 0 0 0 0 0 0 9265400 4050400 5215000 0 0 0 0 0 0 18694 1695 19478 97422 99088 99088 1 LADLFGWSQLIYNHITTR KGEKLLRCKLAAFYRLADLFGWSQLIYNHI LFGWSQLIYNHITTRVNSEQEHFLIVPFGL R L A T R V 1 1 1 1 0 1 0 1 1 2 3 0 0 1 0 1 2 1 1 0 0 0 18 0 2147.1164 E7EV99;E7ENY0;P35611;A0A0A0MSR2 E7EV99 155 172 ADD1 Alpha-adducin yes no 3 0.055524 9.2834 By matching By matching By MS/MS 1 2 2 0.92842 0.93086 22.259 5 Median 0.92842 0.93086 NaN 1 0 Median 1.3053 1.1757 4.1342 2 0 Median 0.75855 0.75711 5.115 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2069400 993980 1075400 297590 142310 155270 1070500 457620 612860 701300 394050 307250 0 0 0 0 0 0 0 0 0 18695 866 19479 97423;97424;97425;97426;97427 99089 99089 1 LADLIER WRRMDASHRGRLLNRLADLIERDRTYLAAL HRGRLLNRLADLIERDRTYLAALETLDNGK R L A E R D 1 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 828.47052 P05091;F8VP50;Q5SYQ7;Q5SYQ9;Q5SYQ8;P00352 P05091 108 114 ALDH2;ALDH1A1 Aldehyde dehydrogenase, mitochondrial;Retinal dehydrogenase 1 yes no 2 0.0067587 91.906 By MS/MS By matching 1 1 0.68145 0.62668 13.187 2 Median 0.597 0.57089 NaN 1 0 Median 0.77785 0.68793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11602000 6909000 4693200 10833000 6596000 4237300 769040 313080 455960 0 0 0 0 0 0 0 0 0 0 0 0 18696 1860 19480 97428;97429 99090 99090 1 LADMALALESAR AFGAPLTKLQVIQFKLADMALALESARLLT QFKLADMALALESARLLTWRAAMLKDNKKP K L A A R L 4 1 0 1 0 0 1 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 12 0 1259.6544 P16219;E9PE82 P16219 314 325 ACADS Short-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0050499 61.353 By MS/MS 1 0.99504 0.99216 NaN 1 Median 0.99504 0.99216 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3200000 1824700 1375200 3200000 1824700 1375200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18697 2026 19481 97430 99091 99091 1 LADMGIAIR AKSRRNLDFQDVLDKLADMGIAIRVASPKL QDVLDKLADMGIAIRVASPKLVMEEAPESY K L A I R V 2 1 0 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 0 0 0 0 9 0 958.52699 Q9Y3I0 Q9Y3I0 452 460 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00056885 113.5 By matching By MS/MS By MS/MS 1 2 2 1.2027 1.1737 13.327 5 Median 1.473 1.4305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1951 1.2129 4.6419 2 0 Median 1.2288 1.052 6.3458 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64885000 27822000 37063000 6709900 2646500 4063400 0 0 0 38519000 16848000 21671000 19656000 8327600 11328000 0 0 0 0 0 0 18698 4430 19482;19483 97431;97432;97433;97434;97435 99092;99093;99094;99095;99096;99097;99098;99099 99097 1979 8 LADMHSTEISLQQR EKNRSFSNAARVLSRLADMHSTEISLQQRL RLADMHSTEISLQQRLEYIARAILSAKSST R L A Q R L 1 1 0 1 0 2 1 0 1 1 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1627.7988 O75694;E9PF10 O75694 1101 1114 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 1.1392E-08 167.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 1.1317 1.1406 19.76 11 Median 0.83788 0.81927 30.181 2 0 Median 1.3602 1.1513 1.3234 2 0 Median 1.0944 1.2036 4.5879 3 1 Median 1.398 1.1852 7.9908 2 1 Median NaN NaN NaN 0 0 Median 1.192 1.0099 26.822 2 0 Median 158890000 75337000 83551000 11379000 5423100 5955500 11281000 4754400 6526800 113850000 55935000 57913000 20553000 8421900 12131000 0 0 0 1827500 802590 1024900 18699 1692 19484;19485 97436;97437;97438;97439;97440;97441;97442;97443;97444;97445;97446 99100;99101;99102;99103;99104;99105;99106;99107;99108;99109;99110 99107 558 11 LADPAVTDFPAGK RKQETKLKLMARYGRLADPAVTDFPAGKGY GRLADPAVTDFPAGKGYPCKTCKIVLNSIE R L A G K G 3 0 0 2 0 0 0 1 0 0 1 1 0 1 2 0 1 0 0 1 0 0 13 0 1300.6663 D6RJ07;Q9UL40;B7Z4J8 D6RJ07 241 253 ZNF346 Zinc finger protein 346 yes no 2 0.014445 50.108 By matching By MS/MS By MS/MS 1 1 1 0.64715 0.60966 7.9104 3 Plateau NaN NaN NaN 0 0 Median 0.65281 0.55393 NaN 1 0 Median 0.60157 0.57616 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.64715 0.64511 NaN 1 0 Median NaN NaN NaN 0 0 Median 10593000 6293300 4299300 0 0 0 635830 433820 202010 4647200 2948500 1698800 0 0 0 5309500 2911000 2398500 0 0 0 18700 829 19486 97447;97448;97449 99111;99112 99111 2 LADQCTGLQGFLVFHSFGGGTGSGFTSLLMER IGKEIIDLVLDRIRKLADQCTGLQGFLVFH GGGTGSGFTSLLMERLSVDYGKKSKLEFSI K L A E R L 1 1 0 1 1 2 1 7 1 0 5 0 1 4 0 3 3 0 0 1 0 0 32 0 3389.6173 Q9BQE3;F5H5D3;P68363;Q71U36;F8VQQ4 P68363 125 156 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 3 2.5991E-05 28.215 By MS/MS By matching 1 1 0.8395 0.81592 30.869 2 Median NaN NaN NaN 0 0 Median 1.1878 1.0149 NaN 1 0 Median 0.59334 0.65592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811900 1592400 2219500 0 0 0 3188500 1322100 1866400 623460 270290 353160 0 0 0 0 0 0 0 0 0 18701 2633;3212;1034 19487 97450;97451 99113 99113 1 LADQIFAYYK IEAEVNLCFDQFVYKLADQIFAYYKVMAGS QFVYKLADQIFAYYKVMAGSLLLDKRLRSE K L A Y K V 2 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 0 10 0 1230.6285 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 706 715 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.010957 43.246 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.1122 1.106 48.04 5 Plateau 1.1122 1.0993 NaN 1 0 Median 1.1574 1.0185 NaN 1 0 Median 1.0338 1.1127 NaN 1 0 Median 0.73022 0.62768 75.495 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13823000 6475400 7347200 3267000 1619900 1647200 1824600 797400 1027200 6655800 3058000 3597900 2075100 1000100 1074900 0 0 0 0 0 0 18702 3224;897 19488 97452;97453;97454;97455;97456 99114;99115;99116;99117 99115 4 LADQSGLDVIR IHCKSVEEISTLVQKLADQSGLDVIRIRKP LVQKLADQSGLDVIRIRKPFHTDNPSIQGQ K L A I R I 1 1 0 2 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1185.6354 H0Y6Y8;B1AL05;Q8N983;H0YBU8 H0Y6Y8 101 111 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.00012637 119.68 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1712 1.1674 28.46 5 Median 1.0689 1.0152 NaN 1 0 Median 1.3293 1.1292 14.471 2 0 Median 1.1521 1.1674 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9682 2.0286 NaN 1 0 Median NaN NaN NaN 0 0 Median 72242000 31255000 40987000 41585000 19194000 22390000 14205000 5519400 8685300 9868900 4652500 5216400 0 0 0 6584000 1889100 4694900 0 0 0 18703 570 19489 97457;97458;97459;97460;97461 99118;99119;99120;99121;99122 99119 5 LADSPPPQVWQLISK KPLEKVLLEEGEAQRLADSPPPQVWQLISK LADSPPPQVWQLISKVLARHFSAADASRVL R L A S K V 1 0 0 1 0 2 0 0 0 1 2 1 0 0 3 2 0 1 0 1 0 0 15 0 1677.909 P11441;Q5HY81 P11441 87 101 UBL4A Ubiquitin-like protein 4A yes no 2 0.0014826 39.148 By MS/MS By matching By matching 1 1 1 0.84986 0.73941 10.362 3 Median 0.67179 0.63503 NaN 1 0 Median 0.84986 0.73941 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96023 0.77402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6385900 3551200 2834600 5211600 2924100 2287500 1032400 557730 474660 0 0 0 141860 69379 72483 0 0 0 0 0 0 18704 1965 19490 97462;97463;97464 99123 99123 1 LAEALYIADR GRGLQTVHINENFAKLAEALYIADRKAREA ENFAKLAEALYIADRKAREAVEMRAQVERK K L A D R K 3 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 10 0 1133.6081 Q13573;G3V3A4;G3V4X8 Q13573 287 296 SNW1 SNW domain-containing protein 1 yes no 2 0.00040727 118.18 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.5197 1.3266 32.394 5 Median 0.7587 0.70572 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.046 1.0763 NaN 1 0 Median 1.8485 1.5425 NaN 1 1 Median 1.5197 1.5127 NaN 1 0 Median 1.5401 1.3266 NaN 1 0 Median 50133000 20427000 29706000 17262000 7050800 10211000 0 0 0 6828400 3064400 3764000 1641500 610370 1031200 20797000 8567300 12230000 3603900 1134500 2469400 18705 2826 19491 97465;97466;97467;97468;97469 99124;99125;99126;99127;99128;99129;99130 99124 7 LAEALYIADRK GRGLQTVHINENFAKLAEALYIADRKAREA NFAKLAEALYIADRKAREAVEMRAQVERKM K L A R K A 3 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 11 1 1261.703 Q13573;G3V3A4;G3V4X8 Q13573 287 297 SNW1 SNW domain-containing protein 1 yes no 2;3 3.9005E-05 100.48 By matching By matching By MS/MS By MS/MS 1 1 4 2 1.0497 1.0534 14.318 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95596 1.0142 NaN 1 0 Median 1.0121 0.97171 NaN 1 0 Median 1.0623 1.0888 15.97 4 0 Median 1.2175 1.0973 17.945 2 0 Median 53716000 24634000 29083000 0 0 0 0 0 0 4661600 2316500 2345000 3231300 1754900 1476400 33933000 15491000 18443000 11890000 5071900 6818200 18706 2826 19492 97470;97471;97472;97473;97474;97475;97476;97477 99131;99132;99133;99134;99135;99136;99137;99138 99135 7 LAEAQIEELR QVEEVHQLSRKAETKLAEAQIEELRQKTQE KAETKLAEAQIEELRQKTQEEGEERAESEQ K L A L R Q 2 1 0 0 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.6245 Q9NR28 Q9NR28 208 217 DIABLO Diablo homolog, mitochondrial yes yes 2 5.4366E-06 155.07 By MS/MS By MS/MS 2 2 1.1865 1.0697 14.882 4 Median 0.99915 0.95384 3.0404 2 0 Median 1.4606 1.2237 5.8613 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51530000 24081000 27449000 38987000 19275000 19712000 12543000 4806400 7736400 0 0 0 0 0 0 0 0 0 0 0 0 18707 4075 19493 97478;97479;97480;97481 99139;99140;99141;99142;99143;99144 99141 6 LAEAQIEELRQK QVEEVHQLSRKAETKLAEAQIEELRQKTQE ETKLAEAQIEELRQKTQEEGEERAESEQEA K L A Q K T 2 1 0 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1426.778 Q9NR28 Q9NR28 208 219 DIABLO Diablo homolog, mitochondrial yes yes 3 0.00012794 79.82 By MS/MS 1 1.0792 1.0685 NaN 1 Median 1.0792 1.0685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6586700 2952600 3634200 6586700 2952600 3634200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18708 4075 19494 97482 99145;99146 99146 2 LAEASASAAYK AKQMELEQAVEHIAKLAEASASAAYKADAP HIAKLAEASASAAYKADAPEGLAPEDRDKP K L A Y K A 5 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1080.5451 Q96T58 Q96T58 2181 2191 SPEN Msx2-interacting protein yes yes 2 0.00017784 93.111 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 0.987 0.98164 12.84 7 Median 1.1654 1.039 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94065 0.99235 1.5343 2 0 Median 1.0606 0.969 0.15718 2 0 Median 0.93855 0.98362 NaN 1 0 Median 0.82809 0.70962 NaN 1 1 Median 10970000 5398500 5571700 167830 77067 90767 0 0 0 2278900 1237200 1041700 1195800 546770 649030 5341000 2478600 2862400 1986600 1058800 927760 18709 3741 19495 97483;97484;97485;97486;97487;97488;97489 99147;99148;99149;99150;99151;99152;99153 99149 7 LAEDDKDGVMAHK ASKKQREKLLELIRRLAEDDKDGVMAHKVL RRLAEDDKDGVMAHKVLNLLWNLAHSDDVP R L A H K V 2 0 0 3 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 1 0 0 13 1 1427.6715 Q93008;O00507 Q93008 494 506 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3 0.031392 21.06 By MS/MS By MS/MS 2 2 1.1368 1.1041 14.206 4 Median 1.1393 1.2017 18.925 2 0 Median 1.1368 1.0734 10.947 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5790700 2860200 2930500 1330200 642630 687550 4460600 2217600 2243000 0 0 0 0 0 0 0 0 0 0 0 0 18710 3573 19496 97490;97491;97492;97493 99154;99155 99155 2 LAEDEAFQR IALKEKEAENERLRRLAEDEAFQRRRLEEQ NERLRRLAEDEAFQRRRLEEQAAQHKADIE R L A Q R R 2 1 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1077.5091 Q15149 Q15149 2006 2014 PLEC Plectin yes yes 2 5.5389E-12 146.54 By MS/MS By MS/MS By MS/MS 2 2 1 1.3865 1.1421 13.997 3 Median NaN NaN NaN 0 0 Median 1.4277 1.1421 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3865 1.2074 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1173 0.92594 NaN 1 0 Median 32994000 14466000 18528000 0 0 0 24797000 10640000 14157000 0 0 0 2516200 1081500 1434600 0 0 0 5680900 2744900 2936000 18711 2933 19497 97494;97495;97496;97497;97498 99156;99157;99158;99159;99160;99161 99156 6 LAEDEAFQRR IALKEKEAENERLRRLAEDEAFQRRRLEEQ ERLRRLAEDEAFQRRRLEEQAAQHKADIEE R L A R R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2006 2015 PLEC Plectin yes yes 3 0.0078735 33.225 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1418 1.2409 31.315 5 Median 1.1418 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8898 0.97789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96614 1.0451 NaN 1 0 Median 2.136 1.8748 0 2 0 Median 10934000 4725600 6207900 2881400 1379600 1501800 0 0 0 1086000 522750 563240 0 0 0 1772000 936880 835090 5194200 1886400 3307700 18712 2933 19498 97499;97500;97501;97502;97503 99162;99163;99164;99165;99166 99165 5 LAEDEGDSEPEAVGQSR GHPYVRRKRKKFPDRLAEDEGDSEPEAVGQ EDEGDSEPEAVGQSRGRRQKK_________ R L A S R G 2 1 0 2 0 1 4 2 0 0 1 0 0 0 1 2 0 0 0 1 0 0 17 0 1787.781 Q9UIG0 Q9UIG0 1461 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 7.6387E-11 107.37 By MS/MS By matching 1 1 0.84176 0.79194 16.054 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67394 0.70696 NaN 1 0 Median 1.0514 0.88714 NaN 1 0 Median 5595000 2795300 2799700 0 0 0 0 0 0 0 0 0 0 0 0 4096800 2204000 1892800 1498200 591270 906960 18713 4290 19499 97504;97505 99167 99167 1 LAEDVVTFQTLPPQR QGETQTELVMFILLRLAEDVVTFQTLPPQR LAEDVVTFQTLPPQRRRDIQQTLTQNMERI R L A Q R R 1 1 0 1 0 2 1 0 0 0 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1712.9097 Q9HAV4 Q9HAV4 160 174 XPO5 Exportin-5 yes yes 2 0.0013261 40.715 By MS/MS By matching 1 1 0.80529 0.74451 11.992 2 Median 0.70822 0.68398 NaN 1 0 Median 0.91568 0.81039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7655500 5084000 2571500 6930200 4722500 2207700 725340 361450 363880 0 0 0 0 0 0 0 0 0 0 0 0 18714 4012 19500 97506;97507 99168;99169 99168 2 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE LDLASESTAHAQSSKADSLLAVVKREPAEQ K L A S K A 5 0 0 4 0 1 6 1 2 0 4 1 0 1 1 5 1 0 0 0 0 0 32 0 3427.5175 Q15424;Q14151 Q15424 254 285 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3;4 1.8731E-21 65.893 By MS/MS By matching By MS/MS 2 1 2 0.74535 0.79508 11.238 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76272 0.81327 3.1982 2 0 Median 1.0946 0.92571 NaN 1 0 Median 0.69717 0.71442 4.9948 2 0 Median NaN NaN NaN 0 0 Median 69370000 36232000 33138000 0 0 0 0 0 0 39151000 19519000 19632000 545540 264070 281470 29673000 16448000 13225000 0 0 0 18715 2951;2859 19501 97508;97509;97510;97511;97512 99170;99171;99172;99173;99174;99175 99172 6 LAEEIPLK RMILEIMQKEADETKLAEEIPLKILAHNGL KEADETKLAEEIPLKILAHNGLVGRLIGKE K L A L K I 1 0 0 0 0 0 2 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 911.53278 F8W930;Q9Y6M1 F8W930 277 284 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.036433 65.252 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18716 1088 19502 97513;97514 99176;99177 99177 2 LAEFSSQAAEEEEK QNSKLSKERKLLEDRLAEFSSQAAEEEEKV RLAEFSSQAAEEEEKVKSLNKLRLKYEATI R L A E K V 3 0 0 0 0 1 5 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 14 0 1566.7049 Q7Z406;A0A0C4DFM8 Q7Z406 1025 1038 MYH14 Myosin-14 yes no 2 1.1179E-05 89.548 By MS/MS 1 1.0746 0.94945 NaN 1 Median NaN NaN NaN 0 0 Median 1.0746 0.94945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2028100 1040100 987990 0 0 0 2028100 1040100 987990 0 0 0 0 0 0 0 0 0 0 0 0 18717 3242 19503 97515 99178;99179 99178 2 LAEFSSQAAEEEEKVK QNSKLSKERKLLEDRLAEFSSQAAEEEEKV AEFSSQAAEEEEKVKSLNKLRLKYEATIAD R L A V K S 3 0 0 0 0 1 5 0 0 0 1 2 0 1 0 2 0 0 0 1 0 0 16 1 1793.8683 Q7Z406;A0A0C4DFM8 Q7Z406 1025 1040 MYH14 Myosin-14 yes no 2 0.03599 29.936 By MS/MS 1 0.694 0.67701 NaN 1 Median 0.694 0.67701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7379100 4298400 3080700 7379100 4298400 3080700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18718 3242 19504 97516 99180;99181 99180 2 LAEGEQILSGGVFNK QCKYLLAKCCVDLSKLAEGEQILSGGVFNK LAEGEQILSGGVFNKQKSHDDIVTEFGDSA K L A N K Q 1 0 1 0 0 1 2 3 0 1 2 1 0 1 0 1 0 0 0 1 0 0 15 0 1560.8148 G5EA36;F6QPS0;I3L3H6;I3L2Z8 G5EA36 85 99 CDC27 no no 2 4.6018E-06 87.184 By MS/MS 1 0.90652 0.9847 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90652 0.9847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16614000 8717300 7897000 0 0 0 0 0 0 16614000 8717300 7897000 0 0 0 0 0 0 0 0 0 18719 1135 19505 97517 99182;99183 99183 2 LAEIEEIK EKSLKEKELVNEKSKLAEIEEIKCRQEKEI LVNEKSKLAEIEEIKCRQEKEITKLNEELK K L A I K C 1 0 0 0 0 0 3 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 943.52261 Q15075 Q15075 1126 1133 EEA1 Early endosome antigen 1 yes yes 2 0.0087245 79.469 By MS/MS 2 0.92091 0.81782 NaN 1 Median NaN NaN NaN 0 0 Median 0.92091 0.81782 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3327500 2184800 1142700 0 0 0 3327500 2184800 1142700 0 0 0 0 0 0 0 0 0 0 0 0 18720 2926 19506 97518;97519 99184;99185 99184 2 LAEIGAPIQGNR PGHYGAWAAQELQAKLAEIGAPIQGNREEL QAKLAEIGAPIQGNREELVERLQSYTRQTG K L A N R E 2 1 1 0 0 1 1 2 0 2 1 0 0 0 1 0 0 0 0 0 0 0 12 0 1237.6779 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 36 47 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.00015076 135.79 By MS/MS By MS/MS By MS/MS 1 1 1 0.91459 0.74295 8.7764 3 Median NaN NaN NaN 0 0 Median 0.80515 0.67428 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.9474 0.80338 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91459 0.74295 NaN 1 0 Median 19747000 10288000 9459500 0 0 0 9175200 5040800 4134400 0 0 0 7926300 3890300 4036000 0 0 0 2645900 1356700 1289200 18721 2817 19507 97520;97521;97522 99186;99187;99188;99189;99190 99187 5 LAEIGAPIQGNREELVER PGHYGAWAAQELQAKLAEIGAPIQGNREEL IGAPIQGNREELVERLQSYTRQTGIVLNRP K L A E R L 2 2 1 0 0 1 4 2 0 2 2 0 0 0 1 0 0 0 0 1 0 0 18 1 1993.0593 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 36 53 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 1.7189E-13 134.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 4 1 0.83022 0.90205 13.382 12 Median 0.78074 0.86742 14.502 3 0 Plateau 1.067 1.0287 NaN 1 0 Median 0.81831 0.99523 4.8166 2 0 Median 0.99468 0.97378 NaN 1 0 Median 0.83022 0.90205 4.9446 4 1 Median 0.86037 0.77777 NaN 1 0 Median 381140000 199800000 181340000 37115000 20357000 16758000 3755800 1827900 1927900 167560000 86396000 81168000 10868000 5368900 5499600 155430000 82526000 72899000 6414200 3324000 3090200 18722 2817 19508 97523;97524;97525;97526;97527;97528;97529;97530;97531;97532;97533;97534 99191;99192;99193;99194;99195;99196;99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207;99208;99209;99210;99211;99212 99202 22 LAEIIWQNR PPEGSLDVLQSWCEKLAEIIWQNRQQIRRA QSWCEKLAEIIWQNRQQIRRAEHLCQQLPI K L A N R Q 1 1 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 9 0 1141.6244 P51692;K7EK35;P42229 P51692 282 290 STAT5B;STAT5A Signal transducer and activator of transcription 5B;Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A yes no 2 0.0070414 52.716 By MS/MS 1 0.84628 0.8113 NaN 1 Median 0.84628 0.8113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815400 2094000 2721400 4815400 2094000 2721400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18723 2441 19509 97535 99213;99214 99213 2 LAEISDVWEEMK LESEHPDQAQAILSRLAEISDVWEEMKTTL LSRLAEISDVWEEMKTTLKNREASLGEASK R L A M K T 1 0 0 1 0 0 3 0 0 1 1 1 1 0 0 1 0 1 0 1 0 0 12 0 1448.6857 Q01082;A0A087WUZ3 Q01082 1037 1048 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00051621 80.763 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 2 1.122 1.0456 34.986 10 Median 1.7132 1.6589 NaN 1 1 Median 1.0615 0.93554 75.407 2 1 Median 0.86185 0.94906 33.333 3 0 Median 1.122 1.0184 5.419 2 0 Median 1.1641 1.2207 23.595 2 0 Median NaN NaN NaN 0 0 Median 62495000 29768000 32728000 9339500 3914700 5424800 13059000 4965000 8093700 31263000 16723000 14540000 2159000 991340 1167700 6674700 3173200 3501500 0 0 0 18724 2681 19510;19511 97536;97537;97538;97539;97540;97541;97542;97543;97544;97545 99215;99216;99217;99218;99219;99220;99221;99222;99223;99224 99218 1371 9 LAEKEKVDLVLLGK AERLGPLQVARVLAKLAEKEKVDLVLLGKQ KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K L A G K Q 1 0 0 1 0 0 2 1 0 0 4 3 0 0 0 0 0 0 0 2 0 0 14 2 1553.9392 P38117 P38117 111 124 ETFB Electron transfer flavoprotein subunit beta yes yes 3 3.6554E-05 82.069 By MS/MS By MS/MS By matching 2 1 1 1.1902 1.1728 23.171 4 Median 0.94075 0.98809 3.6388 2 0 Median 1.5952 1.561 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4755 1.3567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85581000 43467000 42114000 74839000 39171000 35668000 9273700 3838600 5435200 0 0 0 1468000 457230 1010700 0 0 0 0 0 0 18725 2272 19512 97546;97547;97548;97549 99225;99226;99227;99228 99227 4 LAELDEYLQNLNHIQR YYKGFEDKVSIWERKLAELDEYLQNLNHIQ AELDEYLQNLNHIQRKWVYLEPIFGRGALP K L A Q R K 1 1 2 1 0 2 2 0 1 1 4 0 0 0 0 0 0 0 1 0 0 0 16 0 1968.0065 Q8NCM8 Q8NCM8 1332 1347 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.023428 17.701 By MS/MS 1 1.7001 1.4327 NaN 1 Median NaN NaN NaN 0 0 Median 1.7001 1.4327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2030800 691020 1339800 0 0 0 2030800 691020 1339800 0 0 0 0 0 0 0 0 0 0 0 0 18726 3418 19513 97550 99229 99229 1 LAELEEALQK AEQRGELALKDARNKLAELEEALQKAKQDM DARNKLAELEEALQKAKQDMARLLREYQEL K L A Q K A 2 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1142.6183 CON__P13647;P13647;H0YI76 CON__P13647 432 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.0569E-06 125.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 5 2 0.27514 0.26715 85.87 13 Median 0.289 0.28669 59.848 3 3 Plateau 0.3074 0.26658 92.733 2 2 Median 0.32163 0.33277 31.059 2 2 Median 0.084422 0.07149 106.03 5 5 Median 0.56374 0.60515 NaN 1 1 Median NaN NaN NaN 0 0 Median 79417000 66915000 12502000 21179000 18283000 2896400 22739000 18596000 4142600 9626700 8108600 1518100 23565000 20103000 3461300 2307700 1824500 483220 0 0 0 + 18727 757 19514 97551;97552;97553;97554;97555;97556;97557;97558;97559;97560;97561;97562;97563;97564;97565 99230;99231;99232;99233;99234;99235;99236;99237;99238;99239;99240;99241;99242;99243;99244 99235 15 LAELEEFINGPNNAHIQQVGDR YVETELIFALAKTNRLAELEEFINGPNNAH INGPNNAHIQQVGDRCYDEKMYDAAKLLYN R L A D R C 2 1 3 1 0 2 3 2 1 2 2 0 0 1 1 0 0 0 0 1 0 0 22 0 2463.2142 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1187 1208 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 1.1984E-26 124.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 2 0.93406 0.90326 12.958 15 Median 0.92576 0.90105 1.432 5 0 Median 1.0975 0.94925 9.7574 4 0 Median 0.66538 0.72836 1.0391 2 0 Median 1.1398 0.97356 5.3026 2 0 Median 0.70693 0.74145 6.7046 2 0 Median NaN NaN NaN 0 0 Median 254340000 124320000 130020000 181840000 86170000 95670000 24108000 10856000 13253000 40113000 22902000 17212000 2242600 1003600 1239000 6035600 3388400 2647200 0 0 0 18728 44 19515 97566;97567;97568;97569;97570;97571;97572;97573;97574;97575;97576;97577;97578;97579;97580 99245;99246;99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261;99262;99263 99249 19 LAELHADLK QLWEKAQRLHLPPVRLAELHADLKIQERDE HLPPVRLAELHADLKIQERDELAWKKLKLD R L A L K I 2 0 0 1 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1008.5604 P30533;A0A3B3IRQ7 P30533 76 84 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 0.012105 61.679 By MS/MS 1 6.425 5.4771 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.425 5.4771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11868000 1792200 10076000 0 0 0 0 0 0 0 0 0 11868000 1792200 10076000 0 0 0 0 0 0 18729 2196 19516 97581 99264 99264 1 LAELKQECLAR ______________________________ HKLKLAELKQECLARGLETKGIKQDLIHRL K L A A R G 2 1 0 0 1 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1329.7075 P82979;H0YHG0;F8VZQ9;F8VS12 P82979 13 23 SARNP SAP domain-containing ribonucleoprotein yes no 3 0.010447 30.55 By MS/MS 1 0.99612 1.0901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99612 1.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2284400 1227500 1056900 0 0 0 0 0 0 2284400 1227500 1056900 0 0 0 0 0 0 0 0 0 18730 2661 19517 97582 99265 99265 1 LAELQEQLK SDSSTDDSEEERAQRLAELQEQLKAVHEQL EERAQRLAELQEQLKAVHEQLAALSQPQQN R L A L K A 1 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1070.5972 O60885;M0QZD9;Q15059 O60885 511 519 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 no no 2 1.2529E-05 133.55 By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 2 1.0099 1.0109 13.051 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92424 1.0058 11.087 3 2 Median 1.1761 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2167 0.99891 23.489 2 1 Median 108610000 56186000 52421000 0 0 0 0 0 0 91410000 48228000 43182000 5021900 2309200 2712700 0 0 0 12175000 5648500 6526800 18731 1638;2923 19518 97583;97584;97585;97586;97587;97588;97589;97590 99266;99267;99268;99269;99270;99271;99272;99273;99274;99275;99276 99271 11 LAELQEQLR EESESSDSEEERAHRLAELQEQLRAVHEQL EERAHRLAELQEQLRAVHEQLAALSQGPIS R L A L R A 1 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1098.6033 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;A0A0G2JHN8;A0A140T9I1 H0Y6K2 526 534 BRD2 Bromodomain-containing protein 2 yes no 2 1.8596E-10 170.66 By MS/MS By MS/MS 3 2 1.3561 1.2321 17.266 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2253 1.2321 20.936 3 0 Median 1.5089 1.2603 14.762 2 0 Median 45433000 20022000 25411000 0 0 0 0 0 0 0 0 0 0 0 0 37607000 16940000 20667000 7826100 3081600 4744500 18732 279 19519 97591;97592;97593;97594;97595 99277;99278;99279;99280;99281 99279 5 LAELSDYR KKAVAMSKRYGSDRRLAELSDYRRLSESQL RYGSDRRLAELSDYRRLSESQLSFRRSPTK R L A Y R R 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 8 0 965.48181 Q96PK6 Q96PK6 608 615 RBM14 RNA-binding protein 14 yes yes 2 0.00092829 98.997 By MS/MS By MS/MS 1 1 0.85979 0.88157 6.5986 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82554 0.84138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89547 0.92367 NaN 1 1 Median NaN NaN NaN 0 0 Median 17840000 8732100 9108300 0 0 0 0 0 0 10570000 5159900 5410400 0 0 0 7270100 3572100 3698000 0 0 0 18733 3712 19520 97596;97597 99282;99283 99283 2 LAELSDYRR KKAVAMSKRYGSDRRLAELSDYRRLSESQL YGSDRRLAELSDYRRLSESQLSFRRSPTKS R L A R R L 1 2 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 9 1 1121.5829 Q96PK6 Q96PK6 608 616 RBM14 RNA-binding protein 14 yes yes 2 0.001144 96.948 By MS/MS By MS/MS 3 1 1.1042 1.2159 23.5 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2326 1.3755 25.968 3 1 Median NaN NaN NaN 0 0 Median 0.98925 1.0748 NaN 1 0 Median NaN NaN NaN 0 0 Median 36717000 16806000 19911000 0 0 0 0 0 0 14684000 5823800 8860300 0 0 0 22033000 10982000 11051000 0 0 0 18734 3712 19521 97598;97599;97600;97601 99284;99285;99286;99287;99288 99288 5 LAEMDRDLMVGK IRLFAKKQPGQLRTRLAEMDRDLMVGKLER RTRLAEMDRDLMVGKLERDLYTQQKVEILT R L A G K L 1 1 0 2 0 0 1 1 0 0 2 1 2 0 0 0 0 0 0 1 0 0 12 1 1376.6792 Q8WZA0;K7ES95 Q8WZA0 110 121 LZIC Protein LZIC yes no 3 0.049655 17.211 By MS/MS 1 1.1002 1.1531 NaN 1 Median 1.1002 1.1531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5609900 2659100 2950800 5609900 2659100 2950800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18735 3525 19522 97602 99289 99289 1 LAEMLDQR TEELDIRTLQTKNRKLAEMLDQRQAIEDEL LQTKNRKLAEMLDQRQAIEDELREHIEKLE K L A Q R Q 1 1 0 1 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 974.48552 Q5VTR2;C9J0A5;C9JXC9;C9JWJ4 Q5VTR2 58 65 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 2 0.0007736 98.299 By MS/MS By MS/MS 1 1 1.1302 1.0891 15.595 2 Median NaN NaN NaN 0 0 Median 1.1555 0.97537 NaN 1 1 Median 1.1054 1.2161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9150600 4723600 4427000 0 0 0 5003200 2678500 2324700 4147300 2045000 2102300 0 0 0 0 0 0 0 0 0 18736 3112 19523 97603;97604 99290;99291 99291 2 LAEMPADSGYPAYLGAR STSRWAEALREISGRLAEMPADSGYPAYLG EMPADSGYPAYLGARLASFYERAGRVKCLG R L A A R L 4 1 0 1 0 0 1 2 0 0 2 0 1 0 2 1 0 0 2 0 0 0 17 0 1780.8454 P38606 P38606 365 381 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 4.0541E-18 120.96 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.88139 0.81436 12.821 5 Median 0.77155 0.72819 0.33525 2 2 Median 0.94079 0.81436 NaN 1 0 Median 0.88139 0.90498 NaN 1 0 Median 1.1406 0.96897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62604000 34628000 27976000 50029000 27986000 22042000 5148500 2734200 2414300 7055100 3753400 3301700 371900 154390 217510 0 0 0 0 0 0 18737 2276 19524 97605;97606;97607;97608;97609 99292;99293;99294;99295;99296 99293 5 LAEMSLEQDNIK IAAHLNPSDTEEWVRLAEMSLEQDNIKQAI WVRLAEMSLEQDNIKQAIFCYTKALKYEPT R L A I K Q 1 0 1 1 0 1 2 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 12 0 1389.681 Q9Y5Q9;A0A494C1S7 Q9Y5Q9 223 234 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 6.1328E-06 132.91 By matching By MS/MS By matching By matching 1 3 1 1 0.36967 0.41635 96.652 6 Median NaN NaN NaN 0 0 Median 0.16747 0.16221 NaN 1 0 Median 0.65825 0.72223 76.638 3 1 Median 1.5084 1.3112 NaN 1 0 Median 0.13991 0.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median 95968000 70671000 25297000 0 0 0 10946000 9588900 1357500 50509000 33502000 17008000 732590 185860 546730 33779000 27394000 6385200 0 0 0 18738 4467 19525;19526 97610;97611;97612;97613;97614;97615 99297;99298;99299 99298 1994 3 LAENFCVCHLATGDMLR LLGPPGAGKGTQAPRLAENFCVCHLATGDM ENFCVCHLATGDMLRAMVASGSELGKKLKA R L A L R A 2 1 1 1 2 0 1 1 1 0 3 0 1 1 0 0 1 0 0 1 0 0 17 0 2005.9172 F8W1A4;P54819;F8VZG5;G3V213 F8W1A4 35 51 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 3 0.0068559 24.538 By MS/MS 1 1.7421 1.4844 NaN 1 Median NaN NaN NaN 0 0 Median 1.7421 1.4844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 982940 346520 636420 0 0 0 982940 346520 636420 0 0 0 0 0 0 0 0 0 0 0 0 18739 1081 19527 97616 99300 99300 1 LAENIDAQLK IYLQHADEEREKTYKLAENIDAQLKRMAQD EKTYKLAENIDAQLKRMAQDLKDIIEHLNT K L A L K R 2 0 1 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1113.603 P37198;M0QXN5 P37198 436 445 NUP62 Nuclear pore glycoprotein p62 yes no 2 0.00035174 110.87 By matching By matching By MS/MS 1 1 2 1.1496 1.0737 21.797 4 Median 0.85772 0.80558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91961 0.94721 NaN 1 0 Median 1.4588 1.2494 3.6937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21628000 9335400 12293000 1085900 706460 379490 0 0 0 7752100 3345400 4406700 12790000 5283500 7506800 0 0 0 0 0 0 18740 2267 19528 97617;97618;97619;97620 99301;99302 99301 2 LAENIDAQLKR IYLQHADEEREKTYKLAENIDAQLKRMAQD KTYKLAENIDAQLKRMAQDLKDIIEHLNTS K L A K R M 2 1 1 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1269.7041 P37198;M0QXN5 P37198 436 446 NUP62 Nuclear pore glycoprotein p62 yes no 2;3 2.6901E-05 153.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 2 1.0579 1.0675 11.488 13 Median 0.98376 0.98681 5.2694 2 0 Median 1.2763 1.1655 24.263 2 1 Median 0.97094 1.0734 4.0204 4 0 Median 1.1065 1.0633 6.2937 3 0 Median NaN NaN NaN 0 0 Median 1.4115 1.2535 8.8429 2 1 Median 110440000 52265000 58172000 22665000 11721000 10944000 14389000 6459100 7930100 51993000 25167000 26826000 15681000 6875800 8805600 0 0 0 5708700 2042400 3666400 18741 2267 19529 97621;97622;97623;97624;97625;97626;97627;97628;97629;97630;97631;97632;97633;97634 99303;99304;99305;99306;99307;99308;99309;99310;99311;99312;99313;99314;99315;99316;99317;99318;99319;99320;99321 99307 19 LAEPSQLLK LLATQVEGQATNLQRLAEPSQLLKSAIVHL ATNLQRLAEPSQLLKSAIVHLINYQDDAEL R L A L K S 1 0 0 0 0 1 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 9 0 997.5808 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 116 124 JUP Junction plakoglobin yes no 2 0.0071437 52.403 By matching By matching By MS/MS By matching By MS/MS 1 1 2 2 3 0.75803 0.76557 32.813 9 Median 0.75803 0.72425 NaN 1 0 Median 0.98561 0.87064 NaN 1 0 Median 0.89477 0.93188 30.656 2 0 Median 1.1212 0.98619 25.396 2 0 Median 0.57366 0.55163 30.463 3 0 Median NaN NaN NaN 0 0 Median 26937000 15086000 11851000 3893300 2166600 1726800 2270200 1062100 1208100 8884100 5261100 3623000 1940800 857100 1083700 9948500 5738900 4209600 0 0 0 18742 2013 19530 97635;97636;97637;97638;97639;97640;97641;97642;97643 99322;99323;99324 99323 3 LAEQAER ______________________________ EDLVYQAKLAEQAERYDEMVESMKKVAGMD K L A E R Y 2 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 815.41373 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P27348;E9PG15;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;P31947;P61981;P62258;B4DJF2;I3L3T1;I3L0W5;Q04917;F8WEB6;A2IDB1 P62258 13 19 YWHAZ;YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 2 0.020057 60.788 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1.06 0.97523 2.6829 7 Median 1.0503 0.99694 0.30817 2 0 Median 1.1222 0.95563 NaN 1 0 Median 1.0318 0.96286 3.0096 2 0 Median 1.135 0.93252 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.171 0.97523 NaN 1 0 Median 3651000 1720500 1930500 1398200 659410 738760 1062200 502420 559730 661800 312140 349660 442730 209470 233250 0 0 0 86173 37030 49143 18743 2576;2618;2210;2152;2714;2566;2211 19531 97644;97645;97646;97647;97648;97649;97650 99325;99326;99327;99328;99329;99330;99331;99332;99333;99334;99335 99329 11 LAEQAERYDDMAAAMK ______________________________ AEQAERYDDMAAAMKAVTEQGHELSNEERN K L A M K A 5 1 0 2 0 1 2 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 16 1 1811.8182 P31946;Q4VY20;Q4VY19;A0A0J9YWE8;P61981 P31946 14 29 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 2;3 9.9829E-10 137.16 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 3 1.1594 1.0924 15.106 15 Median 1.1671 1.2127 11.696 4 0 Median 1.1744 1.0839 15.432 6 0 Median 1.078 1.1299 0.21523 2 0 Median 1.1497 1.0177 15.373 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 473120000 212250000 260870000 333700000 151090000 182610000 97985000 42139000 55846000 31812000 14408000 17404000 9624400 4612000 5012400 0 0 0 0 0 0 18744 2210;2566 19532;19533 97651;97652;97653;97654;97655;97656;97657;97658;97659;97660;97661;97662;97663;97664;97665 99336;99337;99338;99339;99340;99341;99342;99343;99344;99345;99346;99347;99348;99349;99350;99351;99352;99353 99352 951;952 18 LAEQAERYDDMAACMK ______________________________ AEQAERYDDMAACMKSVTEQGAELSNEERN K L A M K S 4 1 0 2 1 1 2 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 16 1 1900.8118 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 12 27 YWHAZ 14-3-3 protein zeta/delta yes no 3 3.2129E-08 89.466 By MS/MS 2 1.2501 1.1576 18.048 2 Median NaN NaN NaN 0 0 Median 1.2501 1.1576 18.048 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18452000 7385200 11067000 0 0 0 18452000 7385200 11067000 0 0 0 0 0 0 0 0 0 0 0 0 18745 2618 19534;19535 97666;97667 99354;99355 99355 1280 2 LAEQAERYDDMASAMK ______________________________ AEQAERYDDMASAMKAVTELNEPLSNEDRN R L A M K A 4 1 0 2 0 1 2 0 0 0 1 1 2 0 0 1 0 0 1 0 0 0 16 1 1827.8131 Q04917;F8WEB6;A2IDB1 Q04917 13 28 YWHAH 14-3-3 protein eta yes no 2;3 3.4688E-09 103.88 By MS/MS By MS/MS By matching 2 2 1 0.98821 0.98926 5.1127 5 Median 0.94472 0.98484 1.5207 2 0 Median 1.0286 0.9546 5.0438 2 0 Median 1.0286 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71820000 36412000 35408000 55390000 28927000 26463000 12846000 5975900 6870200 3583900 1508900 2075000 0 0 0 0 0 0 0 0 0 18746 2714 19536 97668;97669;97670;97671;97672 99356;99357;99358;99359;99360 99358 5 LAEQAERYDDMATCMK ______________________________ AEQAERYDDMATCMKAVTEQGAELSNEERN K L A M K A 3 1 0 2 1 1 2 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 16 1 1930.8223 P27348;E9PG15 P27348 12 27 YWHAQ 14-3-3 protein theta yes no 3 2.418E-05 75.961 By MS/MS By MS/MS 1 1 1.4354 1.4124 22.714 2 Median 1.5821 1.6584 NaN 1 0 Median 1.3023 1.2028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16322000 6983400 9338300 5482900 2358800 3124200 10839000 4624600 6214200 0 0 0 0 0 0 0 0 0 0 0 0 18747 2152 19537 97673;97674 99361;99362;99363 99362 3 LAEQAERYDEMVESMK ______________________________ AEQAERYDEMVESMKKVAGMDVELTVEERN K L A M K K 2 1 0 1 0 1 4 0 0 0 1 1 2 0 0 1 0 0 1 1 0 0 16 1 1927.8656 P62258;B4DJF2;I3L3T1 P62258 13 28 YWHAE 14-3-3 protein epsilon yes no 2;3 2.4952E-06 95.401 By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 1.1634 1.0904 11.532 9 Median 1.037 1.0904 7.3234 3 0 Median 1.2277 1.1044 4.4634 3 0 Median 1.429 1.4768 NaN 1 0 Median 1.1437 1.0453 0.81232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76604000 35812000 40792000 60897000 28849000 32048000 10640000 4973600 5666400 3741800 1523400 2218500 1325500 466080 859420 0 0 0 0 0 0 18748 2576 19538 97675;97676;97677;97678;97679;97680;97681;97682;97683 99364;99365;99366;99367;99368 99365 5 LAEQAERYDEMVESMKK ______________________________ EQAERYDEMVESMKKVAGMDVELTVEERNL K L A K K V 2 1 0 1 0 1 4 0 0 0 1 2 2 0 0 1 0 0 1 1 0 0 17 2 2055.9605 P62258;B4DJF2;I3L3T1 P62258 13 29 YWHAE 14-3-3 protein epsilon yes no 3;4 1.9348E-07 87.148 By MS/MS By MS/MS By matching By matching 4 3 2 4 1.0688 1.0097 19.754 13 Median 1.0731 1.1306 35.236 4 0 Median 1.1474 0.99483 5.0926 3 0 Median 0.97009 1.0924 11.124 2 0 Median 1.0902 0.97542 13.135 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150870000 79152000 71715000 117850000 63525000 54327000 24143000 11670000 12473000 5618400 2453900 3164500 3254300 1503700 1750600 0 0 0 0 0 0 18749 2576 19539;19540 97684;97685;97686;97687;97688;97689;97690;97691;97692;97693;97694;97695;97696 99369;99370;99371;99372;99373;99374;99375;99376 99373 1246 8 LAEQFPR ILSQLGADSLTSLRKLAEQFPRQVLDSKAP DSLTSLRKLAEQFPRQVLDSKAPKPEDIDE K L A P R Q 1 1 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 859.4552 E9PL10;Q96K17 E9PL10 116 122 BTF3L4 Transcription factor BTF3;Transcription factor BTF3 homolog 4 yes no 2 0.0011659 132.94 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0614 0.94759 3.8263 4 Median 0.95567 0.93054 NaN 1 0 Median 1.0935 0.90665 NaN 1 0 Median 1.0302 0.98846 NaN 1 0 Median 1.167 0.96495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24653000 11714000 12939000 9465400 4730600 4734800 7639700 3405900 4233800 6130000 2898400 3231500 1418400 679560 738810 0 0 0 0 0 0 18750 953 19541 97697;97698;97699;97700 99377;99378;99379;99380;99381;99382;99383;99384 99382 8 LAEQQDLQR PVVYDVCDDQEIQKRLAEQQDLQRDIEQHS QEIQKRLAEQQDLQRDIEQHSAGVESVFNI R L A Q R D 1 1 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1099.5622 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;A0A1W2PRN9 Q8WXH0 6063 6071 SYNE2 Nesprin-2 yes no 2 0.02476 52.716 By MS/MS 1 0.3541 0.3701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3541 0.3701 NaN 1 1 Median NaN NaN NaN 0 0 Median 1284300 841780 442500 0 0 0 0 0 0 0 0 0 0 0 0 1284300 841780 442500 0 0 0 18751 3521 19542 97701 99385 99385 1 LAETQEEISAEVAAK FIADCDRRTEVAKKRLAETQEEISAEVAAK LAETQEEISAEVAAKAERVHELNEEIGKLL R L A A K A 4 0 0 0 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1587.7992 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 174 188 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 2.7277E-10 162.68 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1 0.95891 0.8647 10.112 11 Median 0.88647 0.82837 7.5098 2 0 Median 1.0601 0.91688 16.019 2 0 Median 0.90127 0.8957 17.632 2 0 Median 1.1259 0.98079 4.3325 2 0 Median 0.8635 0.84282 1.4873 2 0 Median 1.0334 0.8647 NaN 1 0 Median 123830000 61471000 62363000 13260000 6636100 6624000 3832600 1854100 1978500 76040000 37881000 38159000 13951000 6218800 7732100 14880000 7935500 6944500 1869800 944920 924840 18752 206;4407 19543 97702;97703;97704;97705;97706;97707;97708;97709;97710;97711;97712 99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397;99398 99392 13 LAETQEEISAEVSAK FIAECDRRTELAKKRLAETQEEISAEVSAK LAETQEEISAEVSAKAEKVHELNEEIGKLL R L A A K A 3 0 0 0 0 1 4 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 15 0 1603.7941 Q9NQ29;A8MYV2;B8ZZ10;B8ZZ09 Q9NQ29 108 122 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 6.7739E-07 85.288 By MS/MS 3 1.185 1.2445 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.185 1.2445 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6193300 2527200 3666100 0 0 0 0 0 0 6193300 2527200 3666100 0 0 0 0 0 0 0 0 0 18753 4058 19544 97713;97714;97715 99399;99400;99401 99400 3 LAETQNIAPSFVK TLKSRTRRLQSTSERLAETQNIAPSFVKGF ERLAETQNIAPSFVKGFLLRDRGSDVESLD R L A V K G 2 0 1 0 0 1 1 0 0 1 1 1 0 1 1 1 1 0 0 1 0 0 13 0 1416.7613 Q96I63;Q96TA2;Q5T8D1;Q5T8D2 Q96I63 225 237 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 0.033637 26.514 By MS/MS By matching By matching 1 1 1 1.1373 1.0136 3.0425 3 Plateau 1.0504 0.98814 NaN 1 0 Median 1.2315 1.0398 NaN 1 0 Median 0.96894 0.98482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2164900 1051200 1113700 843670 463240 380430 956330 392980 563350 364940 195010 169930 0 0 0 0 0 0 0 0 0 18754 3677 19545 97716;97717;97718 99402 99402 1 LAETVFNFQEK ALVWESYKLDPYVQRLAETVFNFQEKVDDL YVQRLAETVFNFQEKVDDLLIIEEKIDLEV R L A E K V 1 0 1 0 0 1 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1324.6663 Q14204 Q14204 836 846 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 2.8944E-05 155.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 3 1 1 1.0609 1.0497 20.874 8 Median 1.0563 1.0604 NaN 1 0 Median 0.79974 0.7121 NaN 1 0 Median 0.9756 1.039 NaN 1 0 Median 1.1818 1.1579 19.273 3 0 Median 1.2555 1.3278 NaN 1 0 Median 1.0655 0.91437 NaN 1 0 Median 103760000 51293000 52462000 37138000 18043000 19095000 18860000 9039900 9820200 39264000 20398000 18866000 5825400 2633200 3192200 1738800 766070 972780 929040 412940 516090 18755 2865 19546 97719;97720;97721;97722;97723;97724;97725;97726 99403;99404;99405;99406;99407;99408;99409 99403 7 LAETYLHR DIQAVNVVINFDFPKLAETYLHRIGRSGRF INFDFPKLAETYLHRIGRSGRFGHLGLAIN K L A H R I 1 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1001.5294 P26196 P26196 414 421 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.0044602 87.323 By MS/MS 1 1.2825 1.0909 NaN 1 Median NaN NaN NaN 0 0 Median 1.2825 1.0909 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4069400 1743100 2326300 0 0 0 4069400 1743100 2326300 0 0 0 0 0 0 0 0 0 0 0 0 18756 2140 19547 97727 99410 99410 1 LAEVALAYAK LSENGAFRAEESRQRLAEVALAYAKAGCQV ESRQRLAEVALAYAKAGCQVVAPSDMMDGR R L A A K A 4 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 0 1047.5964 P13716 P13716 150 159 ALAD Delta-aminolevulinic acid dehydratase yes yes 2 0.00036048 123.98 By MS/MS By MS/MS By matching 1 1 1 1.0203 0.96886 7.0477 3 Median 0.95899 0.8731 NaN 1 0 Median 1.1497 0.96886 NaN 1 0 Median 1.0203 0.99866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21541000 10790000 10751000 18267000 9285800 8981600 2594000 1149800 1444200 679730 354320 325410 0 0 0 0 0 0 0 0 0 18757 1994 19548 97728;97729;97730 99411;99412 99411 2 LAEVEAALEK EERLAEQQRAEERERLAEVEAALEKQRQLA EERERLAEVEAALEKQRQLAEAHAQAKAQA R L A E K Q 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1071.5812 Q15149 Q15149 1499 1508 PLEC Plectin yes yes 2 0.00045925 118.18 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.2726 1.2144 5.744 6 Median 1.2528 1.2578 NaN 1 0 Median 1.4182 1.2655 5.1942 2 1 Median 1.1107 1.1855 NaN 1 0 Median 1.2329 1.2089 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2928 1.107 NaN 1 0 Median 154120000 64822000 89296000 39650000 17251000 22398000 75272000 30610000 44661000 19651000 9089800 10561000 5309900 2093500 3216400 0 0 0 14236000 5777300 8458700 18758 2933 19549 97731;97732;97733;97734;97735;97736 99413;99414;99415;99416;99417;99418;99419;99420 99419 8 LAEVGQYEQVK IATWKSLDLIESLLRLAEVGQYEQVKQLFS SLLRLAEVGQYEQVKQLFSFPIKHCPDMLV R L A V K Q 1 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1262.6507 A5YKK6 A5YKK6 460 470 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.00015337 98.249 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1035 1.0923 37.321 5 Median NaN NaN NaN 0 0 Median 1.6644 1.4885 59.337 2 1 Median 0.98606 1.0923 NaN 1 0 Median 1.3674 1.2436 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0166 0.87105 NaN 1 0 Median 18097000 7576900 10520000 0 0 0 5479100 2623000 2856100 8506100 3127100 5379000 1325200 590590 734580 0 0 0 2786800 1236200 1550600 18759 503 19550 97737;97738;97739;97740;97741 99421;99422;99423;99424;99425 99425 5 LAEVIQK WSAHPGVVRAQHLTRLAEVIQKHQRLLWTL VRAQHLTRLAEVIQKHQRLLWTLESLVTGR R L A Q K H 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 799.48035 Q8IZ83 Q8IZ83 108 114 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes yes 2 0.017766 64.776 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1876 1.3048 14.905 4 Linear 1.1559 1.1695 NaN 1 0 Median 1.4543 1.2862 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0113 0.90858 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2202 1.0522 NaN 1 0 Median 3825000 1686100 2138800 1060700 539870 520870 2078800 864750 1214000 0 0 0 269570 123790 145770 0 0 0 415880 157710 258170 18760 3348 19551 97742;97743;97744;97745 99426;99427;99428 99427 3 LAEVSQNIEK LKNPQMGDPASLDHKLAEVSQNIEKLRVET SLDHKLAEVSQNIEKLRVETQKFEAWLAEV K L A E K L 1 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1129.5979 B7ZL14;H0Y7W6;Q96RU3 B7ZL14 392 401 FNBP1 Formin-binding protein 1 yes no 2 0.0014621 65.305 By MS/MS 1 1.1253 0.9998 NaN 1 Median NaN NaN NaN 0 0 Median 1.1253 0.9998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1536400 767570 768860 0 0 0 1536400 767570 768860 0 0 0 0 0 0 0 0 0 0 0 0 18761 642 19552 97746 99429 99429 1 LAEWVLTQR ENLEGKYLSFEAEEKLAEWVLTQREQQLPV FEAEEKLAEWVLTQREQQLPVNEETLFQKA K L A Q R E 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 9 0 1114.6135 Q7Z3K3 Q7Z3K3 1031 1039 POGZ Pogo transposable element with ZNF domain yes yes 2 0.00097908 87.308 By matching By MS/MS By matching By matching By MS/MS 2 1 1 1 2 1.107 0.99947 126.39 7 Median 1.1344 1.138 5.2175 2 0 Median NaN NaN NaN 0 0 Median 0.90865 0.99947 NaN 1 0 Median 0.80816 0.7061 NaN 1 0 Median 0.032918 0.036127 NaN 1 0 Median 1.2347 1.0235 12.749 2 1 Median 61951000 30667000 31284000 49253000 22197000 27056000 0 0 0 5436200 2638500 2797700 232550 101720 130820 5254700 5017000 237710 1774400 712340 1062100 18762 3241 19553 97747;97748;97749;97750;97751;97752;97753 99430;99431;99432 99430 3 LAEYYGLYR RAEWERTCGPYHKQRLAEYYGLYRDLFHGA PYHKQRLAEYYGLYRDLFHGATFVPRVPLH R L A Y R D 1 1 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 3 0 0 0 9 0 1146.571 Q96DV4 Q96DV4 151 159 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 2 0.0052544 72.485 By MS/MS 1 1.0989 1.1949 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0989 1.1949 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8332700 3874300 4458400 0 0 0 0 0 0 8332700 3874300 4458400 0 0 0 0 0 0 0 0 0 18763 3629 19554 97754 99433 99433 1 LAFAQHQAEVAK SFLFSLGWNWMYLYKLAFAQHQAEVAKMEP LYKLAFAQHQAEVAKMEPLNNVCAKKMDWT K L A A K M 4 0 0 0 0 2 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 12 0 1311.6935 Q96S66 Q96S66 235 246 CLCC1 Chloride channel CLIC-like protein 1 yes yes 3 0.00025098 59.198 By MS/MS 1 1.2301 1.0632 NaN 1 Median NaN NaN NaN 0 0 Median 1.2301 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1718300 787260 931020 0 0 0 1718300 787260 931020 0 0 0 0 0 0 0 0 0 0 0 0 18764 3732 19555 97755 99434;99435 99434 2 LAFLLFK PYLPPFPARGSGIHRLAFLLFKQDQPIDFS ARGSGIHRLAFLLFKQDQPIDFSEDARPSP R L A F K Q 1 0 0 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 0 0 0 7 0 850.53166 Q96DV4 Q96DV4 268 274 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 2 0.056289 38.202 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.3441 1.327 12.031 5 Median 1.1934 1.1426 NaN 1 0 Median 1.5761 1.3472 NaN 1 0 Median 1.1762 1.3121 NaN 1 0 Median 1.8586 1.6023 NaN 1 0 Median 1.3441 1.327 NaN 1 0 Median NaN NaN NaN 0 0 Median 9324700 3894300 5430400 1800700 841140 959560 6010800 2423200 3587600 1166500 501880 664650 132820 40873 91945 213830 87237 126590 0 0 0 18765 3629 19556 97756;97757;97758;97759;97760 99436 99436 1 LAFLNVQAAEEALPR EYACTAVDMISRRTRLAFLNVQAAEEALPR LAFLNVQAAEEALPRIVELMGRELNWDDYK R L A P R I 4 1 1 0 0 1 2 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 15 0 1640.8886 P43304 P43304 558 572 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.00023797 72.006 By MS/MS By MS/MS 2 2 0.88557 0.77573 29.797 4 Median 0.6457 0.64154 47.741 2 0 Median 0.89469 0.77573 4.8515 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10512000 6265000 4247000 4369800 3044800 1325000 6142200 3220200 2922000 0 0 0 0 0 0 0 0 0 0 0 0 18766 2325 19557 97761;97762;97763;97764 99437;99438;99439 99439 3 LAFNSLLEK SSTKRSTTLDAGNIKLAFNSLLEKAEARER DAGNIKLAFNSLLEKAEAREREREKEEARK K L A E K A 1 0 1 0 0 0 1 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 1033.5808 O75400;A0A3F2YNY6 O75400 719 727 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.00047525 122.52 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 2 3 3 3 1.1868 1.1148 23.444 15 Median 0.83826 0.83245 17.58 2 0 Median 0.90567 0.79249 60.832 2 0 Median 1.0379 1.1162 0.17376 2 0 Median 1.2154 1.0786 9.6771 3 0 Median 1.1623 1.2065 5.1287 3 0 Plateau 1.2896 1.1293 8.0937 3 0 Plateau 79339000 37334000 42005000 2177900 1190200 987700 2349100 1241000 1108200 53879000 25779000 28100000 8919300 3894200 5025100 11060000 4831200 6228400 954240 398580 555660 18767 1670 19558 97765;97766;97767;97768;97769;97770;97771;97772;97773;97774;97775;97776;97777;97778;97779 99440;99441;99442;99443;99444 99441 5 LAFSSTAR YEAKYLSGIAHFLEKLAFSSTARFDSKDEI IAHFLEKLAFSSTARFDSKDEILLTLEKHG K L A A R F 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 0 0 0 0 0 8 0 851.45012 Q10713 Q10713 115 122 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.020415 50.127 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.4046 1.217 28.676 3 Plateau 1.1553 1.1526 NaN 1 0 Median 1.4401 1.217 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72268 0.72237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9865000 3851500 6013600 3184100 1340300 1843800 6319800 2304300 4015500 0 0 0 361150 206880 154270 0 0 0 0 0 0 18768 2754 19559 97780;97781;97782;97783 99445;99446;99447;99448 99445 4 LAFSVTNNVIR AEGQGQGQLLIKTVKLAFSVTNNVIRLKPP KTVKLAFSVTNNVIRLKPPSNVVSPLEQAL K L A I R L 1 1 2 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1232.6877 Q5SRE5 Q5SRE5 816 826 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.00019063 76.221 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.246 1.1482 9.0379 4 Median 1.2738 1.2756 NaN 1 0 Median 1.285 1.0678 NaN 1 0 Median 1.1228 1.2252 NaN 1 0 Median 1.2189 1.0761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15581000 7799900 7780600 2065200 1150900 914250 1303700 544320 759390 11277000 5687600 5589400 934590 417000 517600 0 0 0 0 0 0 18769 3074 19560 97784;97785;97786;97787 99449;99450;99451;99452 99450 4 LAFYPNQDGDILR AQLAIERSVMNRIFKLAFYPNQDGDILRDQ FKLAFYPNQDGDILRDQVLHEHIQRLSKVV K L A L R D 1 1 1 2 0 1 0 1 0 1 2 0 0 1 1 0 0 0 1 0 0 0 13 0 1520.7623 Q14C86;F8W9S7 Q14C86 1328 1340 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.0012355 72.006 By MS/MS 1 0.98161 0.95038 NaN 1 Median 0.98161 0.95038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3900600 1928300 1972300 3900600 1928300 1972300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18770 2907 19561 97788 99453 99453 1 LAGANPAVITCDELLLGHEK KNWYPRQKICYAKRKLAGANPAVITCDELL PAVITCDELLLGHEKAPAFRDYVAVARGSK K L A E K A 3 0 1 1 1 0 2 2 1 1 4 1 0 0 1 0 1 0 0 1 0 0 20 0 2120.0936 P78527 P78527 4051 4070 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 7.0075E-11 92.993 By matching By MS/MS By matching 1 1 1 0.78246 0.83342 23.659 3 Median 0.76424 0.75854 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78246 0.83342 NaN 1 0 Median 1.2917 1.188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41365000 23126000 18239000 3111300 1653200 1458100 0 0 0 37849000 21256000 16593000 404430 216530 187900 0 0 0 0 0 0 18771 2647 19562 97789;97790;97791 99454;99455;99456;99457 99456 4 LAGAQQVQTQIQVAK LKTQFLTTPISQAQKLAGAQQVQTQIQVAK LAGAQQVQTQIQVAKLPQVVQQQTPVASIQ K L A A K L 3 0 0 0 0 5 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 15 0 1581.8839 Q96L91;A0A0A0MR70 Q96L91 3032 3046 EP400 E1A-binding protein p400 yes no 2 3.654E-20 192.38 By MS/MS By MS/MS 1 1 0.88008 0.89398 12.847 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91917 0.97899 NaN 1 0 Median 0.84264 0.81635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41223000 20795000 20428000 0 0 0 0 0 0 38284000 19223000 19061000 2939700 1572400 1367300 0 0 0 0 0 0 18772 3700 19563 97792;97793 99458;99459;99460 99459 3 LAGDKANYWWLR IGIGAGQQSRIHCTRLAGDKANYWWLRHHP CTRLAGDKANYWWLRHHPQVLSMKFKTGVK R L A L R H 2 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 2 1 0 0 0 12 1 1491.7623 P31939;H7C1S2 P31939 457 468 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 0.00086539 48.004 By MS/MS 1 1.1442 1.1491 NaN 1 Median 1.1442 1.1491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5787800 2794200 2993600 5787800 2794200 2993600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18773 2207 19564 97794 99461;99462 99461 2 LAGEELAGEEAPQEK KVNKAGMEKEKAEEKLAGEELAGEEAPQEK LAGEELAGEEAPQEKAEDKPSTDLSAPVNG K L A E K A 3 0 0 0 0 1 5 2 0 0 2 1 0 0 1 0 0 0 0 0 0 0 15 0 1569.7522 Q7Z4V5;K7EPS6;A0A087WX58 Q7Z4V5 575 589 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 9.4771E-14 145.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 6 3 4 0.90165 0.81791 15.843 21 Median 0.70408 0.68103 1.448 2 2 Median 0.95824 0.8364 3.1617 2 0 Median 0.72238 0.77847 15.317 4 0 Median 1.032 0.88056 7.2958 6 0 Median 0.90165 0.94694 6.4909 3 0 Median 0.77565 0.64562 11.352 4 0 Median 263340000 139400000 123940000 24462000 13856000 10606000 5915600 3039000 2876600 101460000 56281000 45178000 63135000 30999000 32136000 49299000 25563000 23737000 19066000 9657300 9408900 18774 3248 19565 97795;97796;97797;97798;97799;97800;97801;97802;97803;97804;97805;97806;97807;97808;97809;97810;97811;97812;97813;97814;97815 99463;99464;99465;99466;99467;99468;99469;99470;99471;99472;99473;99474;99475;99476;99477;99478;99479;99480;99481;99482;99483;99484;99485;99486;99487;99488;99489;99490;99491 99464 29 LAGENMTGAAK RRRVEHHDHAVVSGRLAGENMTGAAKPYWH VSGRLAGENMTGAAKPYWHQSMFWSDLGPD R L A A K P 3 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 11 0 1061.5175 O95831;E9PMA0 O95831 464 474 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.0001641 113.71 By MS/MS By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1 1.1217 0.98577 18.382 6 Median 0.80654 0.77814 NaN 1 0 Median 1.5099 1.2652 NaN 1 0 Median 1.2177 1.2511 NaN 1 0 Median 1.0887 0.94885 NaN 1 0 Median 0.97616 0.98128 NaN 1 0 Median 1.1557 0.99029 NaN 1 0 Median 17143000 7499600 9643000 2328500 1418500 909950 10773000 4087800 6684800 494970 205990 288980 450650 221400 229260 1868800 1043400 825390 1227100 522460 704640 18775 1797 19566 97816;97817;97818;97819;97820;97821 99492;99493;99494 99493 3 LAGESESNLR GAFFFLINGPEIMSKLAGESESNLRKAFEE EIMSKLAGESESNLRKAFEEAEKNAPAIIF K L A L R K 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1074.5306 P55072 P55072 278 287 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.00073339 99.442 By MS/MS By MS/MS 3 2 1.0525 1.0074 8.8996 5 Median 1.0525 1.01 10.346 3 0 Plateau 1.189 1.0294 5.0861 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57773000 26080000 31693000 9525700 4723200 4802500 48248000 21357000 26891000 0 0 0 0 0 0 0 0 0 0 0 0 18776 2494 19567 97822;97823;97824;97825;97826 99495;99496;99497;99498;99499;99500;99501 99499 7 LAGESESNLRK GAFFFLINGPEIMSKLAGESESNLRKAFEE IMSKLAGESESNLRKAFEEAEKNAPAIIFI K L A R K A 1 1 1 0 0 0 2 1 0 0 2 1 0 0 0 2 0 0 0 0 0 0 11 1 1202.6255 P55072 P55072 278 288 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 3.7927E-05 108.47 By MS/MS By MS/MS 3 2 1.1371 1.1341 8.2339 5 Median 1.0902 1.1078 10.52 3 0 Median 1.1897 1.1874 6.4999 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8966000 3989600 4976400 2670200 1247800 1422500 6295800 2741900 3553900 0 0 0 0 0 0 0 0 0 0 0 0 18777 2494 19568 97827;97828;97829;97830;97831 99502;99503;99504;99505;99506;99507;99508;99509 99509 8 LAGFLDLTEQEFR IRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ AKLAGFLDLTEQEFRIQLLVFKHKMKNLVW K L A F R I 1 1 0 1 0 1 2 1 0 0 3 0 0 2 0 0 1 0 0 0 0 0 13 0 1537.7777 B0QY89;Q9Y262;B0QY90 B0QY89 518 530 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 6.2897E-07 166.55 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1149 1.032 8.5279 4 Median 1.0962 1.0444 NaN 1 0 Median 1.134 0.98044 NaN 1 0 Median 1.1908 1.1934 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0128 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median 37194000 16753000 20441000 10444000 4821700 5622300 15299000 7117000 8181500 10948000 4597400 6350800 0 0 0 503590 217030 286560 0 0 0 18778 554 19569 97832;97833;97834;97835;97836 99510;99511;99512;99513;99514;99515;99516 99516 7 LAGGDWFTSR SPSDLEAHFVPLVKRLAGGDWFTSRTSACG PLVKRLAGGDWFTSRTSACGLFSVCYPRVS R L A S R T 1 1 0 1 0 0 0 2 0 0 1 0 0 1 0 1 1 1 0 0 0 0 10 0 1108.5302 P30153;C9J9C1 P30153 135 144 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.00041199 76.221 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.1479 1.0397 11.896 7 Median 1.0576 1.0101 4.0915 2 0 Median 1.1157 0.95161 7.348 2 0 Median 1.1479 1.1389 NaN 1 0 Median 1.2357 1.0743 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5275 1.3093 NaN 1 0 Median 79559000 35856000 43702000 47252000 21949000 25303000 6642400 3069500 3573000 24156000 10218000 13938000 553280 234150 319130 0 0 0 954910 386060 568860 18779 2190 19570 97837;97838;97839;97840;97841;97842;97843 99517;99518;99519;99520;99521 99518 5 LAGHLSEDPR AILWLWKKHNMVNGRLAGHLSEDPRFPKLQ MVNGRLAGHLSEDPRFPKLQWPTPDLCPAC R L A P R F 1 1 0 1 0 0 1 1 1 0 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1093.5516 Q6ZRP7 Q6ZRP7 515 524 QSOX2 Sulfhydryl oxidase 2 yes yes 2 0.0062334 49.358 By MS/MS 1 1.7784 1.5437 NaN 1 Median NaN NaN NaN 0 0 Median 1.7784 1.5437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372000 637670 1734300 0 0 0 2372000 637670 1734300 0 0 0 0 0 0 0 0 0 0 0 0 18780 3198 19571 97844 99522;99523 99522 2 LAGIINFQR SNLVVNKTIFAKVDRLAGIINFQRPKDPNN FAKVDRLAGIINFQRPKDPNNLLNDWSQKL R L A Q R P 1 1 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1030.5924 O00232 O00232 409 417 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0025958 70.912 By MS/MS By matching 1 1 0.99837 0.92509 9.087 2 Median 1.0005 0.98649 NaN 1 0 Median 0.99623 0.86752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5786400 2811800 2974600 4548100 2226400 2321700 1238300 585390 652930 0 0 0 0 0 0 0 0 0 0 0 0 18781 1449 19572 97845;97846 99524 99524 1 LAGIINFQRPK SNLVVNKTIFAKVDRLAGIINFQRPKDPNN KVDRLAGIINFQRPKDPNNLLNDWSQKLNS R L A P K D 1 1 1 0 0 1 0 1 0 2 1 1 0 1 1 0 0 0 0 0 0 0 11 1 1255.7401 O00232 O00232 409 419 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2;3 4.276E-05 100.15 By MS/MS By matching By MS/MS By MS/MS 2 1 2 3 1.1807 1.1378 7.2198 8 Median 1.0124 1.0088 3.6774 2 0 Median 1.2387 1.131 NaN 1 0 Median 1.1183 1.1322 6.1877 2 0 Median 1.2059 1.1565 3.5744 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50918000 24289000 26629000 26950000 13338000 13612000 4676700 2154800 2521900 11036000 5111800 5924100 8255500 3684500 4571100 0 0 0 0 0 0 18782 1449 19573 97847;97848;97849;97850;97851;97852;97853;97854 99525;99526;99527;99528;99529;99530;99531;99532;99533 99525 9 LAGLDITDASLR QMDNRSKLRNIVELRLAGLDITDASLRLII ELRLAGLDITDASLRLIIRHMPLLSKLHLS R L A L R L 2 1 0 2 0 0 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1243.6772 A0A0C4DGG3;Q8NHM5 A0A0C4DGG3 588 599 KDM2B Lysine-specific demethylase 2B yes no 2 0.00062698 65.347 By MS/MS By matching By matching 1 1 1 1.344 1.2113 19.354 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97482 1.0445 NaN 1 0 Median 1.422 1.2113 NaN 1 0 Median 1.344 1.5332 NaN 1 0 Median NaN NaN NaN 0 0 Median 4864400 2324600 2539700 0 0 0 0 0 0 3831100 1829900 2001200 75440 31450 43990 957860 463280 494580 0 0 0 18783 245 19574 97855;97856;97857 99534;99535 99535 2 LAGLDITDATLR GQDNRSKLRNMTDFRLAGLDITDATLRLII DFRLAGLDITDATLRLIIRHMPLLSRLDLS R L A L R L 2 1 0 2 0 0 0 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 12 0 1257.6929 I3VM54;Q9Y2K7 I3VM54 1029 1040 KDM2A Lysine-specific demethylase 2A yes no 2 0.001303 54.608 By MS/MS 2 1.1536 0.89005 6.4198 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1536 0.89005 6.4198 2 0 Median 2102700 769550 1333200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2102700 769550 1333200 18784 1296 19575 97858;97859 99536 99536 1 LAGLFNEQR RTLGGLEMELRLRERLAGLFNEQRKGQRAK LRLRERLAGLFNEQRKGQRAKDVRENPRAM R L A Q R K 1 1 1 0 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1046.5509 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 283 291 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.0038209 79.906 By MS/MS By MS/MS By matching 1 2 1 1.1821 1.1163 12.703 4 Median 1.1631 1.1205 NaN 1 1 Median 1.1359 1.0212 12.044 2 0 Median 1.2014 1.2785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25028000 11188000 13840000 11949000 5329100 6620000 11032000 4991700 6040200 2046600 867130 1179500 0 0 0 0 0 0 0 0 0 18785 101 19576 97860;97861;97862;97863 99537;99538;99539 99537 3 LAGLHDAILR GNISASPEEVYAVAKLAGLHDAILRMPHGY YAVAKLAGLHDAILRMPHGYDTQVGERGLK K L A L R M 2 1 0 1 0 0 0 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1077.6295 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;A0A087WW65 O75027 584 593 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 0.00036108 82.75 By MS/MS By MS/MS By matching 2 2 1 1.1352 1.0922 9.5391 5 Median 1.1127 1.0768 2.0162 2 0 Median 1.5679 1.2804 2.0289 2 0 Median 0.96122 1.0801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47037000 19784000 27253000 23779000 11179000 12600000 21819000 7885400 13934000 1439100 719230 719890 0 0 0 0 0 0 0 0 0 18786 1642 19577 97864;97865;97866;97867;97868 99540;99541;99542 99540 2 LAGLLLDR L A D R 1 1 0 1 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 869.53345 REV__H7C2N5 yes yes 2 0.036811 37.558 By MS/MS 1 1.1937 1.0009 NaN 1 Median NaN NaN NaN 0 0 Median 1.1937 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33461000 15005000 18456000 0 0 0 33461000 15005000 18456000 0 0 0 0 0 0 0 0 0 0 0 0 + 18787 4528 19578 97869 99543 99543 1 LAGLLQHPDPIVINHVISVDPNDQK IFSCGRLRFSEIPMKLAGLLQHPDPIVINH IVINHVISVDPNDQKKTACYDIDVEVDDPL K L A Q K K 1 0 2 3 0 2 0 1 2 3 3 1 0 0 3 1 0 0 0 3 0 0 25 0 2731.4657 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 302 326 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 3;4 4.8672E-19 75.184 By MS/MS By matching 2 3 0.55468 0.53344 29.516 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52101 0.50039 9.0441 2 0 Median 0.73323 0.63115 41.247 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202600000 127930000 74668000 0 0 0 0 0 0 201720000 127390000 74330000 883100 544680 338420 0 0 0 0 0 0 18788 655 19579 97870;97871;97872;97873;97874 99544;99545;99546;99547 99544 4 LAGLSAALLR GPAPGPAQLRCYAGRLAGLSAALLRTDSFV CYAGRLAGLSAALLRTDSFVGGRWLPAAAT R L A L R T 3 1 0 0 0 0 0 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 10 0 983.61277 P51649;C9J8Q5 P51649 51 60 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 2 0.0010001 69.423 By MS/MS By matching By matching 1 1 1 1.0646 1.0107 20.089 3 Median 1.0646 1.0107 NaN 1 0 Median 1.6866 1.4189 NaN 1 0 Median 0.98624 0.99379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30120000 13069000 17051000 16338000 7633700 8704300 11622000 4308700 7312900 2160400 1126800 1033600 0 0 0 0 0 0 0 0 0 18789 2439 19580 97875;97876;97877 99548;99549 99548 2 LAGPQLVQMFIGDGAK LARACAAQTKATFLKLAGPQLVQMFIGDGA AGPQLVQMFIGDGAKLVRDAFALAKEKAPS K L A A K L 2 0 0 1 0 2 0 3 0 1 2 1 1 1 1 0 0 0 0 1 0 0 16 0 1643.8705 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PN50 R4GNH3 235 250 PSMC3 26S protease regulatory subunit 6A yes no 2 1.1198E-09 121.08 By MS/MS By MS/MS 2 3 0.97877 0.94236 7.8864 5 Median 1.0056 0.96378 0.54993 2 0 Median 0.96935 0.83379 7.3961 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14617000 7174600 7442400 8191000 3974300 4216700 6426000 3200300 3225700 0 0 0 0 0 0 0 0 0 0 0 0 18790 2050 19581 97878;97879;97880;97881;97882 99550;99551;99552;99553;99554 99554 5 LAGSELFAK FTPGAVMLRVGISKKLAGSELFAKVKETCQ VGISKKLAGSELFAKVKETCQRLLEKPKDA K L A A K V 2 0 0 0 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 0 934.51238 Q5T200 Q5T200 1536 1544 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2 0.02476 52.716 By MS/MS 1 0.87462 0.97404 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87462 0.97404 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5269200 2547100 2722000 0 0 0 0 0 0 5269200 2547100 2722000 0 0 0 0 0 0 0 0 0 18791 3082 19582 97883 99555 99555 1 LAGSLLTQALESHAEGFR ESGSAQAGGNQALPRLAGSLLTQALESHAE SLLTQALESHAEGFRERFEKTFQLKEKGLS R L A F R E 3 1 0 0 0 1 2 2 1 0 4 0 0 1 0 2 1 0 0 0 0 0 18 0 1898.985 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 352 369 MOGS Mannosyl-oligosaccharide glucosidase yes no 3 8.2472E-05 40.856 By MS/MS By MS/MS By matching 1 1 1 1.3421 1.2955 1.6391 3 Median 1.3421 1.2847 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2132 1.2955 NaN 1 0 Median 1.5846 1.326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10134000 4361300 5772600 5082200 2213600 2868600 0 0 0 4810800 2046300 2764600 240800 101410 139390 0 0 0 0 0 0 18792 2835 19583 97884;97885;97886 99556;99557;99558 99558 3 LAGSLLTQALESHAEGFRER ESGSAQAGGNQALPRLAGSLLTQALESHAE LTQALESHAEGFRERFEKTFQLKEKGLSSG R L A E R F 3 2 0 0 0 1 3 2 1 0 4 0 0 1 0 2 1 0 0 0 0 0 20 1 2184.1287 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 352 371 MOGS Mannosyl-oligosaccharide glucosidase yes no 3 3.0277E-06 48.883 By MS/MS 1 0.99582 1.021 NaN 1 Median 0.99582 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5438800 2707200 2731600 5438800 2707200 2731600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18793 2835 19584 97887 99559;99560 99560 2 LAGSLVTQAPISAR GDFLRSRFCKDVLPKLAGSLVTQAPISARA KLAGSLVTQAPISARAGPVYSHTLAFKLQL K L A A R A 3 1 0 0 0 1 0 1 0 1 2 0 0 0 1 2 1 0 0 1 0 0 14 0 1382.7882 O43156 O43156 956 969 TTI1 TELO2-interacting protein 1 homolog yes yes 2 1.306E-07 114.86 By MS/MS 1 0.64778 0.62492 NaN 1 Median 0.64778 0.62492 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8258100 4849400 3408700 8258100 4849400 3408700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18794 1556 19585 97888 99561 99561 1 LAGTQPLEVLEAVQR NQYLTDPKFVERTLRLAGTQPLEVLEAVQR LAGTQPLEVLEAVQRSLVLQRPQTWADCVT R L A Q R S 2 1 0 0 0 2 2 1 0 0 3 0 0 0 1 0 1 0 0 2 0 0 15 0 1622.8992 P22314;Q5JRR6 P22314 679 693 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 2.5618E-19 186.81 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 7 7 6 1 4 1 0.9152 0.95416 20.163 26 Median 0.89374 0.85884 10.823 7 0 Median 1.1591 0.95246 28.038 7 0 Median 0.9093 0.9829 6.512 6 0 Median 1.2142 1.0813 NaN 1 0 Median 1.0768 1.1393 19.107 4 0 Median 0.83412 0.68089 NaN 1 0 Median 430810000 210640000 220170000 233220000 120030000 113190000 161540000 72237000 89303000 27808000 14656000 13151000 111040 59502 51540 7717900 3445900 4272000 415070 216350 198720 18795 2100 19586 97889;97890;97891;97892;97893;97894;97895;97896;97897;97898;97899;97900;97901;97902;97903;97904;97905;97906;97907;97908;97909;97910;97911;97912;97913;97914 99562;99563;99564;99565;99566;99567;99568;99569;99570;99571;99572;99573;99574;99575;99576;99577;99578;99579;99580;99581;99582;99583;99584;99585;99586;99587;99588;99589;99590;99591;99592;99593;99594 99565 33 LAGVTLGQR EQPIFLTPCMRDLIKLAGVTLGQRRAQARR MRDLIKLAGVTLGQRRAQARRQTIRHSTRE K L A Q R R 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 913.53451 P26358 P26358 587 595 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 3.1443E-05 154.35 By MS/MS By MS/MS 3 3 1.0639 1.086 10.308 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0391 1.1097 5.7035 3 0 Median 1.2265 1.0566 14.64 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52615000 25077000 27538000 0 0 0 0 0 0 35196000 17180000 18015000 17420000 7896900 9522700 0 0 0 0 0 0 18796 2142 19587 97915;97916;97917;97918;97919;97920 99595;99596;99597;99598;99599;99600 99597 6 LAGWVLSK PIGEVYFAETFDSGRLAGWVLSKAKKDDMD ETFDSGRLAGWVLSKAKKDDMDEEISIYDG R L A S K A 1 0 0 0 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 1 0 0 8 0 872.51199 O14967;D6RAZ4 O14967 71 78 CLGN Calmegin yes no 2 0.023904 43.808 By MS/MS By matching 1 1 1.527 1.4476 30.617 2 Median 1.1728 1.1658 NaN 1 0 Median 1.9881 1.7976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2049900 921700 1128200 1658300 727830 930490 391540 193870 197670 0 0 0 0 0 0 0 0 0 0 0 0 18797 1507 19588 97921;97922 99601 99601 1 LAGYNALLR CSLPTKVFWIAGIVKLAGYNALLRYEGFEN IAGIVKLAGYNALLRYEGFENDSGLDFWCN K L A L R Y 2 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 9 0 989.56581 Q05BQ5 Q05BQ5 200 208 MBTD1 MBT domain-containing protein 1 yes yes 2 0.00085343 94.262 By MS/MS By matching 1 1 1.0202 0.96756 20.105 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79446 0.83934 NaN 1 0 Median 1.31 1.1154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3854100 2136800 1717300 0 0 0 0 0 0 3514200 2009100 1505000 339940 127670 212270 0 0 0 0 0 0 18798 2719 19589 97923;97924 99602 99602 1 LAHALLHTQTK KEVLASQLLVLTGQRLAHALLHTQTKEGME TGQRLAHALLHTQTKEGMELLARLPPTLCT R L A T K E 2 0 0 0 0 1 0 0 2 0 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1231.7037 Q9H2M9 Q9H2M9 1312 1322 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2;3 0.00014032 68.069 By matching By MS/MS By matching By matching 2 2 1 1 1.1901 1.0479 13.487 6 Plateau 1.1389 1.093 6.9087 2 0 Median 1.2436 1.0814 3.5088 2 0 Median 0.69762 0.85787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95932 0.83302 NaN 1 0 Median 4955000 2227600 2727400 1182300 549960 632290 3459800 1519900 1940000 142370 73709 68663 0 0 0 0 0 0 170510 84065 86446 18799 3945 19590 97925;97926;97927;97928;97929;97930 99603;99604;99605 99604 3 LAHEIEALK RNWNEVVTQQYLFDRLAHEIEALKSFSKSD QYLFDRLAHEIEALKSFSKSDLVNWFKAHR R L A L K S 2 0 0 0 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1022.576 O43847;G3V1R5;H0Y5G9 O43847 1053 1061 NRD1 Nardilysin yes no 2 0.0006198 109.11 By MS/MS By MS/MS 1 1 1.11 1.0159 27.484 2 Median 1.2471 1.2339 NaN 1 0 Median 0.98796 0.83651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13165000 5266800 7898000 3035100 1136900 1898200 10130000 4129800 5999800 0 0 0 0 0 0 0 0 0 0 0 0 18800 1597 19591 97931;97932 99606;99607 99607 2 LAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT KFAYLGRLAHEVGWKYQAVTATLEEKRKEK R L A W K Y 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 938.4974 P40429;M0QYS1;Q8J015 P40429 141 148 RPL13A;RPL13a 60S ribosomal protein L13a yes no 2 0.0031222 101.28 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.1497 1.1247 12.398 6 Median 1.075 0.99439 NaN 1 0 Median 1.1732 1.0019 22.766 2 0 Median 1.1999 1.1248 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1015 1.1246 NaN 1 0 Median 1.3872 1.1574 NaN 1 0 Median 85426000 40206000 45219000 33092000 15329000 17763000 13662000 6614600 7047400 15599000 6856500 8742400 0 0 0 20124000 10078000 10046000 2948800 1328800 1620000 18801 2288 19592 97933;97934;97935;97936;97937;97938 99608;99609;99610;99611;99612;99613;99614 99609 7 LAHGGQVNLDMEDHRDEDFVKPK LESIRRGEVPAELRRLAHGGQVNLDMEDHR LDMEDHRDEDFVKPKGAFKAFTGEGQKLGS R L A P K G 1 1 1 4 0 1 2 2 2 0 2 2 1 1 1 0 0 0 0 2 0 0 23 2 2649.2605 Q9UNZ2;F2Z2K0 Q9UNZ2 225 247 NSFL1C NSFL1 cofactor p47 yes no 5 0.066953 14.326 By MS/MS 1 0.86371 1.0324 NaN 1 Median NaN NaN NaN 0 0 Median 0.86371 1.0324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8585200 4058300 4526900 0 0 0 8585200 4058300 4526900 0 0 0 0 0 0 0 0 0 0 0 0 18802 4353 19593 97939 99615 99615 1 LAHISTDPR GVLDQREYLTTLGQRLAHISTDPRLAKAIV TTLGQRLAHISTDPRLAKAIVLAAIFRCLH R L A P R L 1 1 0 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1008.5352 H7BXY3;Q7L2E3 H7BXY3 846 854 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.021677 54.549 By MS/MS 1 1.0373 0.88695 NaN 1 Median NaN NaN NaN 0 0 Median 1.0373 0.88695 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603700 1303100 1300600 0 0 0 2603700 1303100 1300600 0 0 0 0 0 0 0 0 0 0 0 0 18803 1244 19594 97940 99616 99616 1 LAHLGVQVK ATSFLLALEPELEARLAHLGVQVKGEDEEE PELEARLAHLGVQVKGEDEEENNLEVRETK R L A V K G 1 0 0 0 0 1 0 1 1 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 963.58655 P04843;F8WF32 P04843 81 89 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00055902 114.43 By matching By MS/MS By MS/MS By matching By matching 1 3 1 1 2 1.2452 1.1376 22.269 8 Median 1.1689 1.1142 NaN 1 0 Median 1.3265 1.1017 12.969 3 0 Median 1.0972 1.1614 NaN 1 0 Median 2.0324 1.8635 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3088 1.0941 23.805 2 0 Median 75022000 32174000 42848000 6297000 2935400 3361700 60531000 25466000 35065000 4783800 2201700 2582100 2540200 1184300 1355900 0 0 0 870390 387090 483290 18804 1853 19595 97941;97942;97943;97944;97945;97946;97947;97948 99617;99618;99619;99620;99621 99621 4 LAHLGVQVKGEDEEENNLEVR ATSFLLALEPELEARLAHLGVQVKGEDEEE QVKGEDEEENNLEVRETKIKGKSGRFFTVK R L A V R E 1 1 2 1 0 1 5 2 1 0 3 1 0 0 0 0 0 0 0 3 0 0 21 1 2377.1874 P04843;F8WF32 P04843 81 101 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3;4 5.5797E-33 172.37 By MS/MS 3 1.0183 1.02 24.964 3 Plateau 1.0183 1.02 24.964 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54502000 26412000 28089000 54502000 26412000 28089000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18805 1853 19596 97949;97950;97951 99622;99623;99624 99623 2 LAHYIDR SRLQEKEELRELNDRLAHYIDRVRALELEN ELRELNDRLAHYIDRVRALELENDRLLLKI R L A D R V 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 886.4661 Q03252 Q03252 57 63 LMNB2 Lamin-B2 yes yes 2 0.01522 72.138 By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 1.1585 1.1017 22.997 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0699 1.066 41.275 2 0 Median 1.4906 1.2674 NaN 1 0 Median 0.92892 0.96716 9.974 3 0 Median 1.5541 1.3022 6.6053 2 0 Median 23816000 11530000 12287000 0 0 0 0 0 0 6403900 2919300 3484600 359530 145400 214130 12681000 6743200 5937800 4372000 1721700 2650300 18806 2709 19597 97952;97953;97954;97955;97956;97957;97958;97959 99625;99626;99627;99628;99629;99630 99627 6 LAIALGDAVNHPTPMAAAANEVYKR FKPDFYLKYIQKDLRLAIALGDAVNHPTPM HPTPMAAAANEVYKRAKALDQSDNDMSAVY R L A K R A 7 1 2 1 0 0 1 1 1 1 2 1 1 0 2 0 1 0 1 2 0 0 25 1 2592.3482 Q49A26;K7EMM8 Q49A26 509 533 GLYR1 Putative oxidoreductase GLYR1 yes no 4 3.4397E-05 31.473 By MS/MS 1 0.70884 0.73503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70884 0.73503 NaN 1 0 Median NaN NaN NaN 0 0 Median 4020800 2396600 1624200 0 0 0 0 0 0 0 0 0 0 0 0 4020800 2396600 1624200 0 0 0 18807 3018 19598 97960 99631 99631 1 LAIIPGGGGTQR RVAASSAKMGLVETKLAIIPGGGGTQRLPR ETKLAIIPGGGGTQRLPRAIGMSLAKELIF K L A Q R L 1 1 0 0 0 1 0 4 0 2 1 0 0 0 1 0 1 0 0 0 0 0 12 0 1138.6459 Q13825 Q13825 212 223 AUH Methylglutaconyl-CoA hydratase, mitochondrial yes yes 2 0.0040283 66.692 By MS/MS 1 0.83794 0.79767 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83794 0.79767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3274700 1722300 1552400 0 0 0 0 0 0 3274700 1722300 1552400 0 0 0 0 0 0 0 0 0 18808 2840 19599 97961 99632 99632 1 LAIKLPDDQIPK LRGRSFAGNLNTYKRLAIKLPDDQIPKTNC YKRLAIKLPDDQIPKTNCNVAVINVGAPAA R L A P K T 1 0 0 2 0 1 0 0 0 2 2 2 0 0 2 0 0 0 0 0 0 0 12 1 1349.7919 Q01813;B1APP6 Q01813 397 408 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 0.0093103 28.764 By MS/MS 2 1.0269 1.0857 19.605 2 Median 1.0269 1.0857 19.605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9559000 4485200 5073700 9559000 4485200 5073700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18809 2692 19600 97962;97963 99633;99634;99635 99634 3 LAILGIHNEVSK HEQFKATLPDADKERLAILGIHNEVSKIVQ KERLAILGIHNEVSKIVQTYHVNMAGTNPY R L A S K I 1 0 1 0 0 0 1 1 1 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1292.7452 P12814;H9KV75;H7C5W8 P12814 566 577 ACTN1 Alpha-actinin-1 yes no 2;3 0.00017318 62.924 By MS/MS By matching By matching By matching 3 2 2 2 1.0337 0.99721 27.186 9 Median 1.0599 1.0194 2.8453 3 0 Plateau 1.0008 0.87627 4.2425 2 0 Median 0.91121 0.96709 16.209 2 0 Median 1.7028 1.4932 47.982 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79818000 38977000 40842000 61010000 29857000 31154000 10881000 5397200 5483900 7093700 3435000 3658800 833190 287710 545480 0 0 0 0 0 0 18810 1983 19601 97964;97965;97966;97967;97968;97969;97970;97971;97972 99636;99637;99638 99636 3 LAILQVGNR QVTQLKEQVPGFTPRLAILQVGNRDDSNLY PGFTPRLAILQVGNRDDSNLYINVKLKAAE R L A N R D 1 1 1 0 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 982.59236 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 38 46 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 6.7905E-05 119.89 By MS/MS By MS/MS By matching By MS/MS 1 3 1 2 0.80494 0.79798 53.129 7 Median 0.24218 0.23299 NaN 1 1 Median 0.45864 0.39636 43.011 3 2 Median 0.80494 0.85692 NaN 1 0 Median 0.98665 0.83299 1.238 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82879000 57246000 25633000 25244000 20421000 4823300 47715000 31528000 16187000 6891700 3771100 3120600 3028100 1526400 1501700 0 0 0 0 0 0 18811 1968 19602 97973;97974;97975;97976;97977;97978;97979 99639;99640;99641;99642 99639 4 LAILYAK KAIDLFTDAIKLNPRLAILYAKRASVFVKL DAIKLNPRLAILYAKRASVFVKLQKPNAAI R L A A K R 2 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 7 0 790.49528 P50502;Q3KNR6;Q8NFI4;H7C3I1;F6VDH7;Q8IZP2 P50502 147 153 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 yes no 2 0.025554 69.39 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4673200 0 4673200 0 0 0 4673200 0 4673200 0 0 0 0 0 0 0 0 0 0 0 0 18812 2415 19603 97980 99643 99643 1 LAIMMMK DKQRLAQEEESEAKRLAIMMMKKREKYLYQ EEESEAKRLAIMMMKKREKYLYQKIMFGKR R L A M K K 1 0 0 0 0 0 0 0 0 1 1 1 3 0 0 0 0 0 0 0 0 0 7 0 836.43222 B5MCF9;O00541;B3KXD6;H7C267 B5MCF9 518 524 PES1 Pescadillo homolog yes no 2 0.023603 56.51 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 2 1.176 1.0657 17.72 8 Median 1.7179 1.6653 NaN 1 0 Median 1.1935 1.0581 NaN 1 0 Median 0.86904 0.92384 NaN 1 0 Median 1.1588 1.0269 NaN 1 0 Median 1.0833 1.0788 7.0919 2 0 Median 1.3328 1.1357 7.9811 2 0 Median 7256300 3306300 3950100 889660 269650 620020 229530 102110 127430 2798900 1400900 1398000 68639 29270 39369 2774100 1304200 1469900 495540 200200 295340 18813 618 19604 97981;97982;97983;97984;97985;97986;97987;97988 99644;99645;99646 99645 3 LAINLLAK PPSEGEFIDCFQKIKLAINLLAKLQKHIQN DCFQKIKLAINLLAKLQKHIQNPSAAELVH K L A A K L 2 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 854.55894 A0A3B3ISQ4;Q9H6S3 A0A3B3ISQ4 323 330 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.012672 54.525 By MS/MS By MS/MS 2 4 1.4433 1.2688 26.64 6 Median 0.88394 0.85423 29.978 2 0 Median 1.4833 1.3133 5.3393 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12409000 5137000 7272000 2883900 1464700 1419200 9525100 3672300 5852800 0 0 0 0 0 0 0 0 0 0 0 0 18814 426 19605 97989;97990;97991;97992;97993;97994 99647;99648;99649 99649 3 LAINLSSGVSGAGGTVHQPGFIVVETNYR VFQRKRKSRRYYPTRLAINLSSGVSGAGGT TVHQPGFIVVETNYRLYAYTESELQIALIA R L A Y R L 2 1 2 0 0 1 1 5 1 2 2 0 0 1 1 3 2 0 1 4 0 0 29 0 2942.525 Q92759 Q92759 286 314 GTF2H4 General transcription factor IIH subunit 4 yes yes 3 0.0022125 29.54 By MS/MS 1 0.61922 0.62332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61922 0.62332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3047600 2071900 975690 0 0 0 0 0 0 3047600 2071900 975690 0 0 0 0 0 0 0 0 0 18815 3553 19606 97995 99650 99650 1 LAIQLLK LAKYIYHKHDPALPRLAIQLLKRLATVAPM KHDPALPRLAIQLLKRLATVAPMSVYACLG R L A L K R 1 0 0 0 0 1 0 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 7 0 797.53747 Q5SRE5 Q5SRE5 870 876 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.010143 91.584 By MS/MS 1 1.4742 1.6425 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4742 1.6425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372600 489970 1882600 0 0 0 0 0 0 2372600 489970 1882600 0 0 0 0 0 0 0 0 0 18816 3074 19607 97996 99651 99651 1 LAISEDHVASVK EITVLKAALADVLRRLAISEDHVASVKKSV LRRLAISEDHVASVKKSVSSKGQPSPRAVI R L A V K K 2 0 0 1 0 0 1 0 1 1 1 1 0 0 0 2 0 0 0 2 0 0 12 0 1267.6772 Q9HC35;B5MBZ0 Q9HC35 52 63 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 0.0044866 64.297 By MS/MS 1 0.75697 0.63553 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75697 0.63553 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1329900 755410 574520 0 0 0 0 0 0 0 0 0 1329900 755410 574520 0 0 0 0 0 0 18817 4024 19608 97997 99652 99652 1 LAITKEELYR TEFIILVVDSIDRERLAITKEELYRMLAHE IDRERLAITKEELYRMLAHEDLRKAAVLIF R L A Y R M 1 1 0 0 0 0 2 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 10 1 1234.6921 Q96KC2 Q96KC2 99 108 ARL5B ADP-ribosylation factor-like protein 5B yes yes 3 0.0053159 51.927 By MS/MS 1 1.0884 1.0792 NaN 1 Median 1.0884 1.0792 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2707400 1516700 1190600 2707400 1516700 1190600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18818 3693 19609 97998 99653 99653 1 LAIWDTAGQER DFKVKTISVDGNKAKLAIWDTAGQERFRTL NKAKLAIWDTAGQERFRTLTPSYYRGAQGV K L A E R F 2 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 11 0 1258.6306 Q9NP72 Q9NP72 59 69 RAB18 Ras-related protein Rab-18 yes yes 2 0.00020354 96.89 By MS/MS By MS/MS 1 1 1.2904 1.2241 2.3006 2 Median 1.2667 1.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3145 1.2442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42314000 16797000 25517000 39820000 15720000 24099000 0 0 0 2494000 1076400 1417600 0 0 0 0 0 0 0 0 0 18819 4041 19610 97999;98000 99654;99655 99654 2 LAIYGMLPK TAAQLHLRDPVAIVKLAIYGMLPKNLHRRT PVAIVKLAIYGMLPKNLHRRTMMERLHLFP K L A P K N 1 0 0 0 0 0 0 1 0 1 2 1 1 0 1 0 0 0 1 0 0 0 9 0 1004.5729 Q9BYD1;E5RJI7 Q9BYD1 106 114 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 0.027549 37.021 By MS/MS By matching By matching 1 1 1 1.0747 1.0347 20.241 3 Median 0.90305 0.85424 NaN 1 0 Median 1.4598 1.2803 NaN 1 0 Median 1.0747 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5469900 2867700 2602200 3193100 1666100 1527000 345850 150220 195630 1930900 1051400 879530 0 0 0 0 0 0 0 0 0 18820 3888 19611 98001;98002;98003 99656 99656 1 LAKEEMLQMIR IVIQQGRLIDQQSNKLAKEEMLQMIRHGAT QSNKLAKEEMLQMIRHGATHVFASKESELT K L A I R H 1 1 0 0 0 1 2 0 0 1 2 1 2 0 0 0 0 0 0 0 0 0 11 1 1360.7207 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 648 658 SMARCA1 Probable global transcription activator SNF2L1 no no 3 0.00043057 59.542 By MS/MS By MS/MS By matching 1 2 1 1.1255 1.1625 8.8455 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96716 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1255 1.2586 9.5593 2 0 Median 1.3055 1.1489 NaN 1 0 Median 13615000 6579400 7035900 0 0 0 0 0 0 6692900 3772000 2920800 0 0 0 6427800 2617200 3810700 494540 190210 304330 18821 167;643 19612 98004;98005;98006;98007 99657;99658 99658 2 LAKEVDPQGLR VTPANMDLANSDALKLAKEVDPQGLRTIGV DALKLAKEVDPQGLRTIGVITKLDLMDEGT K L A L R T 1 1 0 1 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1224.6826 P50570;K7EPK9 P50570 189 199 DNM2 Dynamin-2 no no 3 0.059937 15.202 By matching By matching By MS/MS By matching 1 1 1 2 0.81663 0.94715 78.746 5 Median 0.78138 0.79978 NaN 1 0 Median 1.1061 1.0588 NaN 1 0 Median 0.81663 0.94715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46628 0.40891 127.76 2 0 Median 16456000 8346500 8109900 1384300 707400 676940 1322100 657170 664950 12859000 6482900 6376500 0 0 0 0 0 0 890460 499030 391430 18822 2417 19613 98008;98009;98010;98011;98012 99659 99659 1 LALAGIGQPVKK QEVVEMRKKNEEFKKLALAGIGQPVKKSVS FKKLALAGIGQPVKKSVSQVTKSVDFHFRT K L A K K S 2 0 0 0 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 1 0 0 12 1 1193.7496 Q9ULW0 Q9ULW0 238 249 TPX2 Targeting protein for Xklp2 yes yes 2;3 0.0027175 50.04 By MS/MS By matching By matching 2 1 1 1.0959 1.156 4.7953 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0959 1.2533 NaN 1 0 Median 1.1833 1.156 NaN 1 0 Median 1.0293 1.1511 NaN 1 0 Median NaN NaN NaN 0 0 Median 8893700 2669500 6224200 0 0 0 0 0 0 6807000 1693000 5114000 564000 249100 314900 1522700 727420 795270 0 0 0 18823 4330 19614 98013;98014;98015;98016 99660;99661 99660 2 LALASLGYEK KDAFDKGSLFGGSVKLALASLGYEKSCVLF GGSVKLALASLGYEKSCVLFNCAALASQIA K L A E K S 2 0 0 0 0 0 1 1 0 0 3 1 0 0 0 1 0 0 1 0 0 0 10 0 1063.5914 Q8WUM4;A0A3B3IT07 Q8WUM4 111 120 PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.0026873 75.378 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18824 3493 19615 98017 99662 99662 1 LALDLEIATYR LARLLRDYQELMNTKLALDLEIATYRTLLE MNTKLALDLEIATYRTLLEGEESRMSGECA K L A Y R T 2 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 1 0 0 0 11 0 1276.7027 P04264;CON__P04264 P04264 473 483 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.00013836 114.5 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 7 2 1 2 1 0.39967 0.37264 140.21 16 Median 1.1455 1.0711 105.85 3 2 Plateau 0.25371 0.21314 158.42 7 5 Median 1.4355 1.4775 39.705 2 0 Median 1.2653 1.1008 NaN 1 0 Median 0.19376 0.19993 146.55 2 2 Median 0.19178 0.15564 NaN 1 1 Median 118070000 76536000 41534000 24640000 13215000 11425000 71323000 50376000 20947000 10632000 4948600 5683000 2564900 722230 1842700 7758200 6286700 1471500 1151900 987810 164100 + 18825 1848 19616 98018;98019;98020;98021;98022;98023;98024;98025;98026;98027;98028;98029;98030;98031;98032;98033;98034 99663;99664;99665;99666;99667;99668;99669;99670;99671;99672;99673;99674;99675;99676;99677 99675 15 LALDMEIHAYR MQQQLDEYQELLDIKLALDMEIHAYRKLLE LDIKLALDMEIHAYRKLLEGEEERLRLSPS K L A Y R K 2 1 0 1 0 0 1 0 1 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1330.6704 P02545;Q3BDU5 P02545 367 377 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 4.2953E-05 85.958 By MS/MS By MS/MS By MS/MS By matching 4 5 8 7 1.2304 1.1894 15.249 24 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1893 1.1987 8.9204 4 0 Median 1.5488 1.3478 23.476 5 0 Median 1.0918 1.0881 14.189 8 1 Median 1.4094 1.1917 11.487 7 0 Median 149140000 69687000 79453000 0 0 0 0 0 0 56362000 25573000 30789000 16701000 6642400 10059000 68704000 34405000 34299000 7373500 3066900 4306600 18826 1834;3010 19617;19618 98035;98036;98037;98038;98039;98040;98041;98042;98043;98044;98045;98046;98047;98048;98049;98050;98051;98052;98053;98054;98055;98056;98057;98058 99678;99679;99680;99681;99682;99683;99684;99685;99686;99687;99688;99689;99690;99691;99692;99693;99694;99695;99696;99697;99698 99696 595 21 LALDMEIHAYRK MQQQLDEYQELLDIKLALDMEIHAYRKLLE DIKLALDMEIHAYRKLLEGEEERLRLSPSP K L A R K L 2 1 0 1 0 0 1 0 1 1 2 1 1 0 0 0 0 0 1 0 0 0 12 1 1458.7653 P02545;Q3BDU5 P02545 367 378 LMNA Prelamin-A/C;Lamin-A/C no no 3 8.0816E-07 108.7 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 5 5 1.2869 1.2632 24.479 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2119 1.3491 9.3047 3 0 Median 2.5975 2.4881 23.854 3 2 Plateau 1.1395 1.2405 9.4458 5 0 Median 1.4089 1.2254 13.23 5 2 Median 225760000 98433000 127320000 0 0 0 0 0 0 24967000 10318000 14649000 13811000 4606100 9204800 149390000 68891000 80503000 37584000 14617000 22967000 18827 1834;3010 19619;19620 98059;98060;98061;98062;98063;98064;98065;98066;98067;98068;98069;98070;98071;98072;98073;98074;98075;98076 99699;99700;99701;99702;99703;99704;99705;99706;99707;99708;99709;99710;99711;99712;99713;99714;99715;99716;99717;99718;99719;99720;99721;99722;99723 99714 595 25 LALDMEINAYR MQQQLAEYQELLDVKLALDMEINAYRKLLE LDVKLALDMEINAYRKLLEGEEERLKLSPS K L A Y R K 2 1 1 1 0 0 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1307.6544 Q03252 Q03252 382 392 LMNB2 Lamin-B2 yes yes 2 0.0022363 54.608 By MS/MS 2 0.88868 0.91882 21.978 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88868 0.91882 21.978 2 0 Median NaN NaN NaN 0 0 Median 4128500 2375700 1752800 0 0 0 0 0 0 0 0 0 0 0 0 4128500 2375700 1752800 0 0 0 18828 2709 19621 98077;98078 99724;99725;99726 99726 3 LALDMEINAYRK MQQQLAEYQELLDVKLALDMEINAYRKLLE DVKLALDMEINAYRKLLEGEEERLKLSPSP K L A R K L 2 1 1 1 0 0 1 0 0 1 2 1 1 0 0 0 0 0 1 0 0 0 12 1 1435.7493 Q03252 Q03252 382 393 LMNB2 Lamin-B2 yes yes 2;3 1.0815E-06 103.34 By matching By MS/MS By matching 1 6 3 0.97477 0.98005 26.937 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4199 1.3019 NaN 1 0 Median 0.8712 0.94365 14.128 6 1 Median 1.885 1.7226 36.877 3 0 Plateau 54538000 28802000 25736000 0 0 0 0 0 0 0 0 0 419920 143910 276010 51971000 27881000 24091000 2146900 777940 1369000 18829 2709 19622;19623 98079;98080;98081;98082;98083;98084;98085;98086;98087;98088 99727;99728;99729;99730;99731;99732;99733;99734 99730 1395 8 LALDMEISAYR MQQQLNDYEQLLDVKLALDMEISAYRKLLE LDVKLALDMEISAYRKLLEGEEERLKLSPS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 0 11 0 1280.6435 P20700;E9PBF6 P20700 368 378 LMNB1 Lamin-B1 yes no 2 0.0055202 66.435 By MS/MS 3 1.0008 1.0293 9.7703 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0008 1.0293 9.7703 3 3 Median NaN NaN NaN 0 0 Median 24132000 13267000 10865000 0 0 0 0 0 0 0 0 0 0 0 0 24132000 13267000 10865000 0 0 0 18830 2084 19624;19625 98089;98090;98091 99735;99736;99737;99738 99738 844 4 LALDMEISAYRK MQQQLNDYEQLLDVKLALDMEISAYRKLLE DVKLALDMEISAYRKLLEGEEERLKLSPSP K L A R K L 2 1 0 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 1 0 0 0 12 1 1408.7384 P20700;E9PBF6 P20700 368 379 LMNB1 Lamin-B1 yes no 2;3 9.5468E-05 80.688 By MS/MS By matching By MS/MS By matching 1 3 7 6 0.98825 1.0102 34.355 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78403 0.83237 NaN 1 1 Median 1.4446 1.3245 45.487 3 0 Median 0.91539 0.94014 8.5013 7 0 Median 1.413 1.2565 37.284 6 0 Median 188830000 96631000 92203000 0 0 0 0 0 0 3399400 1695600 1703800 4378300 1276900 3101500 166980000 87578000 79403000 14074000 6080600 7993800 18831 2084 19626;19627 98092;98093;98094;98095;98096;98097;98098;98099;98100;98101;98102;98103;98104;98105;98106;98107;98108 99739;99740;99741;99742;99743;99744;99745;99746;99747;99748;99749;99750;99751 99743 844 13 LALDVEIATYR LARLLRDYQELMNVKLALDVEIATYRKLLE MNVKLALDVEIATYRKLLEGEECRMSGDLS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1262.6871 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;H0YI76;CON__P48668;P48668;CON__P35908;H0YID6;CON__P35908v2;P35908;CON__ENSEMBL:ENSBTAP00000038253;CON__Q5XKE5;Q5XKE5 CON__P35908 477 487 KRT6A;KRT5;KRT6C;KRT79;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 2 0.00037762 98.249 By MS/MS 3 0.087399 0.074006 145.07 3 Median NaN NaN NaN 0 0 Median 0.087399 0.074006 145.07 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26962000 24129000 2833700 0 0 0 26962000 24129000 2833700 0 0 0 0 0 0 0 0 0 0 0 0 + 18832 764;765;757;741;748;766;735;786 19628 98109;98110;98111 99752;99753;99754 99752 3 LALDVEIATYRK LARLLRDYQELMNVKLALDVEIATYRKLLE NVKLALDVEIATYRKLLEGEECRMSGDLSS K L A R K L 2 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 12 1 1390.782 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;H0YI76;CON__P48668;P48668;CON__P35908;H0YID6;CON__P35908v2;P35908;CON__Q5XKE5;Q5XKE5 CON__P35908 477 488 KRT6A;KRT5;KRT6C;KRT79;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 3 0.00076302 68.44 By MS/MS By MS/MS 1 1 0.10497 0.11848 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10497 0.11848 NaN 1 1 Median NaN NaN NaN 0 0 Median 11937000 11234000 703510 2945400 2945400 0 0 0 0 0 0 0 0 0 0 8991600 8288100 703510 0 0 0 + 18833 764;765;757;741;748;766;786 19629 98112;98113 99755;99756 99755 2 LALDYGIK DVNDKRQVSKERGEKLALDYGIKFMETSAK SKERGEKLALDYGIKFMETSAKANINVENA K L A I K F 1 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 891.50657 P61006 P61006 139 146 RAB8A Ras-related protein Rab-8A yes yes 2 0.0074447 67.032 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0621 0.99134 15.921 4 Median 1.0288 0.99134 5.6187 2 0 Median 1.0934 0.91585 NaN 1 0 Median 1.3903 1.3068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43894000 20253000 23641000 27332000 13364000 13968000 8978500 3915700 5062900 7583100 2973200 4609900 0 0 0 0 0 0 0 0 0 18834 2535 19630 98114;98115;98116;98117;98118 99757;99758;99759;99760;99761;99762 99757 6 LALEAEVSELR LEQARRGKGAWEKTRLALEAEVSELRAELS EKTRLALEAEVSELRAELSSLQTARQEGEQ R L A L R A 2 1 0 0 0 0 3 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1228.6663 Q7Z406;A0A0C4DFM8 Q7Z406 1244 1254 MYH14 Myosin-14 yes no 2 0.00032476 72.006 By MS/MS By matching 1 1 1.4654 1.3429 13.365 2 Median 1.4914 1.476 NaN 1 0 Median 1.4398 1.2218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28191000 11224000 16968000 2734500 1126100 1608400 25457000 10097000 15359000 0 0 0 0 0 0 0 0 0 0 0 0 18835 3242 19631 98119;98120 99763 99763 1 LALEELR GNATVDHLSKYLAVRLALEELRSKGESNQM LSKYLAVRLALEELRSKGESNQMNLDTASE R L A L R S 1 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 842.48617 Q99496 Q99496 267 273 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 2 3.0562E-06 160.69 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1.2358 1.255 17.711 7 Median NaN NaN NaN 0 0 Median 1.0667 0.90594 NaN 1 0 Median 1.1857 1.2499 0.57226 2 0 Median 1.5221 1.3477 0 2 0 Median 1.3528 1.4008 NaN 1 0 Median 1.1493 0.94857 NaN 1 0 Median 38486000 16967000 21519000 0 0 0 605200 278050 327140 26363000 11999000 14364000 3007900 1268300 1739600 5787900 2279900 3508000 2722600 1142300 1580300 18836 3748 19632 98121;98122;98123;98124;98125;98126;98127 99764;99765 99764 2 LALEETGTEVK KFLALLVNLACVEVRLALEETGTEVKEDVV VEVRLALEETGTEVKEDVVTACYALMELGI R L A V K E 1 0 0 0 0 0 3 1 0 0 2 1 0 0 0 0 2 0 0 1 0 0 11 0 1188.6238 Q9UBB6 Q9UBB6 320 330 NCDN Neurochondrin yes yes 2 0.033343 49.715 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18837 4234 19633 98128 99766 99766 1 LALEGLTEDKEK LLENQSLSSSCESLKLALEGLTEDKEKLVK SLKLALEGLTEDKEKLVKEIESLKSSKIAE K L A E K L 1 0 0 1 0 0 3 1 0 0 3 2 0 0 0 0 1 0 0 0 0 0 12 1 1344.7137 Q14789;E7EU81 Q14789 1574 1585 GOLGB1 Golgin subfamily B member 1 yes no 2;3 2.1569E-05 103.22 By MS/MS By MS/MS 2 2 0.96315 0.98303 19.716 4 Median 0.77888 0.84871 29.562 2 0 Median 1.0293 0.98303 8.7429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46337000 23913000 22424000 19081000 10082000 8999600 27256000 13831000 13424000 0 0 0 0 0 0 0 0 0 0 0 0 18838 2900 19634 98129;98130;98131;98132 99767;99768;99769;99770;99771;99772 99771 6 LALEQER NITAGDRRWAGVLSRLALEQERILNPLLDR RWAGVLSRLALEQERILNPLLDRVRTADHH R L A E R I 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 857.46068 Q9Y446 Q9Y446 649 655 PKP3 Plakophilin-3 yes yes 2 0.020057 60.788 By MS/MS 1 0.83388 0.87996 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83388 0.87996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1128300 664020 464240 0 0 0 0 0 0 1128300 664020 464240 0 0 0 0 0 0 0 0 0 18839 4437 19635 98133 99773 99773 1 LALFAHR QNVNVKNIIIALIDRLALFAHREDGPGIPA IIIALIDRLALFAHREDGPGIPADIKLFDI R L A H R E 2 1 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 826.48136 Q96QK1 Q96QK1 306 312 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.01617 69.39 By matching By MS/MS By matching 1 1 1 0.91575 0.98774 10.851 3 Plateau 0.90565 0.89098 NaN 1 0 Median 1.1752 1.0159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91575 0.81908 NaN 1 0 Median NaN NaN NaN 0 0 Median 9213800 4400000 4813800 2355300 1256300 1099000 6621700 3029600 3592100 0 0 0 0 0 0 236850 114170 122680 0 0 0 18840 3722 19636 98134;98135;98136 99774;99775 99774 2 LALFQAIGK ERATTGYPDPYGGEKLALFQAIGKEVVDRA PYGGEKLALFQAIGKEVVDRALGQSWLEVQ K L A G K E 2 0 0 0 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 959.5804 P58107;A0A075B730 P58107 131 139 EPPK1 Epiplakin yes no 2 0.00091162 91.041 By MS/MS By matching By matching By matching By matching 4 4 1 2 3 1.4937 1.4195 17.388 14 Median 1.5162 1.4984 7.8317 4 0 Median 1.3983 1.2381 16.694 4 0 Median NaN NaN NaN 0 0 Median 1.3525 1.2608 NaN 1 0 Median 1.6672 1.7324 2.0201 2 0 Median 1.5062 1.2863 13.041 3 0 Plateau 46258000 18785000 27473000 27440000 10892000 16547000 15953000 6832500 9120700 0 0 0 109970 36936 73030 2308000 834200 1473800 447230 189500 257730 18841 2520 19637 98137;98138;98139;98140;98141;98142;98143;98144;98145;98146;98147;98148;98149;98150 99776;99777;99778;99779 99776 4 LALGDDSPALK LPILGLAEFRSCASRLALGDDSPALKEKRV CASRLALGDDSPALKEKRVGGVQSLGGTGA R L A L K E 2 0 0 2 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1098.5921 P17174 P17174 87 97 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00018859 94.692 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.94547 0.84714 23.557 6 Median 1.214 1.1305 36.284 2 0 Median 0.93959 0.80024 NaN 1 0 Median 0.78512 0.8195 7.2186 2 2 Median 0.98545 0.83213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89309000 44049000 45260000 42976000 20246000 22729000 29886000 14923000 14963000 14799000 8017500 6781800 1648100 862550 785560 0 0 0 0 0 0 18842 2038 19638 98151;98152;98153;98154;98155;98156 99780;99781;99782;99783;99784 99780 5 LALGGCTNRPFYR TLLCKAYRGGHLTIRLALGGCTNRPFYRIV IRLALGGCTNRPFYRIVAAHNKCPRDGRFV R L A Y R I 1 2 1 0 1 0 0 2 0 0 2 0 0 1 1 0 1 0 1 0 0 0 13 1 1523.7667 Q9Y3D3;A6ND22 Q9Y3D3 21 33 MRPS16 28S ribosomal protein S16, mitochondrial yes no 3 0.00011696 75.479 By matching By MS/MS 1 2 1.3757 1.1729 25.331 3 Median 0.90194 0.8999 NaN 1 0 Median 1.4159 1.3235 17.073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45069000 19404000 25665000 2036400 1027200 1009200 43032000 18376000 24656000 0 0 0 0 0 0 0 0 0 0 0 0 18843 4422 19639 98157;98158;98159 99785;99786 99786 2 LALGIPLPELR ASKATGYPLAYVAAKLALGIPLPELRNSVT VAAKLALGIPLPELRNSVTGGTAAFEPSVD K L A L R N 1 1 0 0 0 0 1 1 0 1 4 0 0 0 2 0 0 0 0 0 0 0 11 0 1190.7387 F8VPD4;P27708 F8VPD4 646 656 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0014 59.245 By MS/MS By MS/MS By matching 4 3 1 0.9082 0.91288 27.438 8 Median 0.92662 0.91288 8.4855 4 0 Median 0.8875 0.75146 49.9 3 0 Median 0.84131 0.93782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62045000 32524000 29521000 16275000 8158600 8116400 45005000 23959000 21046000 765440 405970 359470 0 0 0 0 0 0 0 0 0 18844 1057 19640 98160;98161;98162;98163;98164;98165;98166;98167 99787;99788;99789;99790;99791;99792 99788 6 LALGQINIAK YADLMNILYDKDHYKLALGQINIAKNLVDN KDHYKLALGQINIAKNLVDNVAKDYVRLMK K L A A K N 2 0 1 0 0 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1039.639 Q9BZE4;Q5T3R7 Q9BZE4 94 103 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00034304 98.997 By MS/MS By matching By matching By matching By MS/MS By MS/MS 1 3 2 3 4 4 1.2091 1.151 14.512 16 Median 1.3633 1.3469 NaN 1 0 Median 1.381 1.1867 15.118 3 0 Plateau 1.2629 1.3461 13.141 2 0 Median 1.5014 1.3542 21.87 3 0 Plateau 1.1756 1.151 5.326 4 0 Median 1.4644 1.2107 14.353 3 0 Plateau 58431000 27011000 31420000 1866200 779050 1087200 2478400 1134600 1343800 4157600 1762400 2395200 816480 378240 438240 43962000 20862000 23100000 5150200 2094400 3055800 18845 3898 19641 98168;98169;98170;98171;98172;98173;98174;98175;98176;98177;98178;98179;98180;98181;98182;98183;98184 99793;99794;99795;99796;99797;99798;99799;99800 99794 8 LALGSFVEEYNNK VYAMNWSVRPDKRFRLALGSFVEEYNNKVQ FRLALGSFVEEYNNKVQLVGLDEESSEFIC R L A N K V 1 0 2 0 0 0 2 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 0 1482.7355 P61962;A0A087WWI6 P61962 34 46 DCAF7 DDB1- and CUL4-associated factor 7 yes no 2 2.535E-06 107.79 By MS/MS 1 0.5751 0.55403 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5751 0.55403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21221000 12229000 8992300 0 0 0 0 0 0 21221000 12229000 8992300 0 0 0 0 0 0 0 0 0 18846 2563 19642 98185 99801 99801 1 LALHELK FIDQGKLIPDDVMTRLALHELKNLTQYSWL IPDDVMTRLALHELKNLTQYSWLLDGFPRT R L A L K N 1 0 0 0 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 822.49634 Q9UIJ7 Q9UIJ7 74 80 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.043995 43.124 By MS/MS By matching By matching 1 2 1 1.0056 0.97385 23.658 4 Median NaN NaN NaN 0 0 Median 0.89327 0.76138 NaN 1 0 Median 0.93122 1.0294 28.326 2 0 Median 1.3085 1.1256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3984000 2011900 1972100 0 0 0 1377200 865180 512030 2349800 1034600 1315200 256990 112100 144880 0 0 0 0 0 0 18847 4291 19643 98186;98187;98188;98189 99802 99802 1 LALIQLQISSIK ______________________________ SFRLALIQLQISSIKSDNVTRACSFIREAA R L A I K S 1 0 0 0 0 2 0 0 0 3 3 1 0 0 0 2 0 0 0 0 0 0 12 0 1325.8282 Q9NQR4;H7C579;F8WF70 Q9NQR4 6 17 NIT2 Omega-amidase NIT2 yes no 2 0.031417 27.742 By MS/MS By matching 1 1 1.2787 1.1656 20.284 2 Median 1.0211 1.0099 NaN 1 0 Median 1.6013 1.3454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7916200 2809700 5106500 976450 474960 501490 6939800 2334800 4605000 0 0 0 0 0 0 0 0 0 0 0 0 18848 4064 19644 98190;98191 99803 99803 1 LALIQPSR AMGGAVPFKAALTERLALIQPSREQVQRLI KAALTERLALIQPSREQVQRLIAEQPPHLT R L A S R E 1 1 0 0 0 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 8 0 896.54435 C9JBI3;P78330 C9JBI3 66 73 PSPH Phosphoserine phosphatase yes no 2 0.0029873 102.71 By matching By MS/MS 1 1 1.1402 1.0221 27.992 2 Median 1.3155 1.2458 NaN 1 0 Median 0.98831 0.83852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10407000 4875300 5531900 8169200 3841800 4327400 2237900 1033500 1204400 0 0 0 0 0 0 0 0 0 0 0 0 18849 688 19645 98192;98193 99804;99805 99805 2 LALKEDKFPR KKDRKLPAIALDLLRLALKEDKFPRFWKEV LDLLRLALKEDKFPRFWKEVVEQGLLKMQF R L A P R F 1 1 0 1 0 0 1 0 0 0 2 2 0 1 1 0 0 0 0 0 0 0 10 2 1215.6976 Q9BQG0;I3L1L3 Q9BQG0 274 283 MYBBP1A Myb-binding protein 1A yes no 2;3 0.00021855 111.61 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 1.1145 1.2729 15.075 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92546 1.0545 3.8444 2 0 Median 1.1605 1.3107 30.392 2 0 Median 1.1014 1.2948 6.0305 3 0 Median 1.5305 1.3855 8.7188 3 0 Median 61763000 31236000 30527000 0 0 0 0 0 0 33612000 17521000 16091000 1741300 617650 1123700 21560000 11150000 10410000 4849900 1947400 2902500 18850 3789 19646 98194;98195;98196;98197;98198;98199;98200;98201;98202;98203;98204 99806;99807;99808;99809;99810;99811;99812;99813;99814;99815 99808 9 LALLEEAR ERISLKLANEDKEQKLALLEEARTAVGKEA NEDKEQKLALLEEARTAVGKEAGELRTGLQ K L A A R T 2 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 Q5TZA2;B1AKD8 Q5TZA2 1247 1254 CROCC Rootletin yes no 2 0.0010591 148.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 4 1 1.1921 1.0864 15.761 10 Median 1.0922 1.0327 NaN 1 0 Median 1.1752 1.0158 NaN 1 0 Median 1.2093 1.2059 27.237 3 0 Plateau 1.3088 1.1289 9.1755 4 0 Median 1.1421 1.2073 NaN 1 0 Median NaN NaN NaN 0 0 Median 181180000 81387000 99790000 30151000 14394000 15757000 11243000 4988200 6255100 106980000 47818000 59161000 29533000 12788000 16745000 3269100 1398100 1871000 0 0 0 18851 3107 19647 98205;98206;98207;98208;98209;98210;98211;98212;98213;98214 99816;99817;99818;99819;99820;99821;99822;99823;99824;99825;99826;99827;99828 99819 13 LALLHEGTGPR FVLSDEFSHLRPEQRLALLHEGTGPRVISA PEQRLALLHEGTGPRVISAFVEIIFDNSDN R L A P R V 1 1 0 0 0 0 1 2 1 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1162.6459 Q9UQE7 Q9UQE7 62 72 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00010725 148.52 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0122 0.95605 8.0074 4 Median NaN NaN NaN 0 0 Median 1.0713 0.91263 NaN 1 0 Median 0.85791 0.9427 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95626 0.96959 NaN 1 1 Median 1.3565 1.0962 NaN 1 1 Median 102760000 53780000 48979000 0 0 0 3370900 1743500 1627400 53024000 28132000 24892000 0 0 0 40441000 21385000 19057000 5922700 2519000 3403700 18852 4362 19648 98215;98216;98217;98218 99829;99830;99831;99832 99829 4 LALLLSQFVGSQSVR ISEACSLAQQSGDHRLALLLSQFVGSQSVR LALLLSQFVGSQSVRELLTMQLVDWHQLQA R L A V R E 1 1 0 0 0 2 0 1 0 0 4 0 0 1 0 3 0 0 0 2 0 0 15 0 1616.925 P52948;H7C3P6 P52948 1358 1372 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 7.1824E-05 69.979 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 4 1 1 1.4164 1.4095 19.631 8 Median 1.8219 1.8365 NaN 1 0 Median 1.7816 1.5925 NaN 1 1 Median 1.3079 1.4095 17.816 4 2 Median NaN NaN NaN 0 0 Median 1.0118 1.077 NaN 1 0 Median 1.4913 1.2548 NaN 1 0 Median 9781400 4210600 5570800 1091700 309860 781890 1083400 454420 628960 6438600 2839300 3599300 0 0 0 933500 520230 413270 234210 86802 147410 18853 2462 19649 98219;98220;98221;98222;98223;98224;98225;98226 99833;99834;99835;99836;99837;99838 99838 6 LALLNEK EKDAQIAMMQQRIDRLALLNEKQAASPLEP MMQQRIDRLALLNEKQAASPLEPKELEELR R L A E K Q 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 261 267 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0021797 114.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.0854 1.0358 18.036 6 Median NaN NaN NaN 0 0 Median 1.0912 0.96324 37.115 2 0 Median 0.91791 1.0085 NaN 1 0 Median 1.2814 1.1566 NaN 1 0 Median 0.94847 0.99386 NaN 1 0 Median 1.2422 1.0638 NaN 1 0 Median 90737000 44970000 45767000 0 0 0 7605600 3263400 4342300 42982000 22177000 20804000 3742500 1601300 2141100 26898000 13870000 13028000 9509700 4058700 5451000 18854 2905;77 19650 98227;98228;98229;98230;98231;98232 99839;99840;99841;99842;99843;99844;99845;99846;99847 99840 9 LALLNVATQGVHLWDLQDR EDHPIMSFTISKNGRLALLNVATQGVHLWD NVATQGVHLWDLQDRVLVRKYQGVTQGFYT R L A D R V 2 1 1 2 0 2 0 1 1 0 5 0 0 0 0 0 1 1 0 2 0 0 19 0 2161.1644 A0A499FIZ0;Q9H7D7;H0Y9R3 A0A499FIZ0 640 658 WDR26 WD repeat-containing protein 26 yes no 3 4.0742E-05 40.856 By matching By MS/MS 1 2 1.1481 1.0013 5.8956 3 Plateau 1.0958 1.0954 NaN 1 0 Median 1.1352 0.99076 1.5021 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5393300 2397100 2996200 486270 232560 253710 4907000 2164500 2742500 0 0 0 0 0 0 0 0 0 0 0 0 18855 475 19651 98233;98234;98235 99848;99849 99848 2 LALLQEER QVSAQNKEKDTVLGRLALLQEERDKLITEM KDTVLGRLALLQEERDKLITEMDRSLLENQ R L A E R D 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 970.54475 Q14789;E7EU81 Q14789 1541 1548 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0025198 107.66 By matching By MS/MS 1 1 1.1443 1.0347 13.58 2 Median 0.9325 0.93998 NaN 1 0 Median 1.4043 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14565000 6678600 7886800 3673900 1771600 1902300 10892000 4907000 5984500 0 0 0 0 0 0 0 0 0 0 0 0 18856 2900 19652 98236;98237 99850 99850 1 LALLQEQWAGGK RGHTRKQVCDDISRRLALLQEQWAGGKLSI SRRLALLQEQWAGGKLSIPVKKRMALLVQE R L A G K L 2 0 0 0 0 2 1 2 0 0 3 1 0 0 0 0 0 1 0 0 0 0 12 0 1312.7139 Q9HD15 Q9HD15 141 152 SRA1 Steroid receptor RNA activator 1 yes yes 2 0.001095 85.731 By MS/MS 1 1.287 1.2435 NaN 1 Median 1.287 1.2435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3851300 1637600 2213700 3851300 1637600 2213700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18857 4033 19653 98238 99851 99851 1 LALLQVR GIFETKFLSQIESDRLALLQVRAILQQLGL LSQIESDRLALLQVRAILQQLGLNSTCDDS R L A V R A 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 811.52797 P19367;Q2TB90 P19367 795 801 HK1;HKDC1 Hexokinase-1;Putative hexokinase HKDC1 yes no 2 0.0020941 128 By MS/MS By MS/MS By matching By MS/MS 2 5 2 2 1.4277 1.2594 30.509 11 Median 1.2672 1.2215 5.4534 2 0 Median 1.4574 1.2594 38.93 5 0 Median 0.96084 1.0021 3.787 2 0 Median 1.9312 1.6266 18.968 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27096000 11778000 15318000 8135200 3672300 4462900 13688000 5685400 8002900 3866600 1945100 1921500 1406100 475010 931130 0 0 0 0 0 0 18858 2064 19654 98239;98240;98241;98242;98243;98244;98245;98246;98247;98248;98249 99852;99853;99854 99852 3 LALNQISQISMK PGSLDKIAVVTADGKLALNQISQISMKSPQ DGKLALNQISQISMKSPQLILVNMASFPEC K L A M K S 1 0 1 0 0 2 0 0 0 2 2 1 1 0 0 2 0 0 0 0 0 0 12 0 1344.7435 Q96E11;X6RDS5 Q96E11 128 139 MRRF Ribosome-recycling factor, mitochondrial yes no 2 9.1523E-06 98.048 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 3 1 1.3197 1.1618 12.83 8 Median 1.0656 0.98982 NaN 1 0 Median 1.4718 1.258 NaN 1 0 Median 1.017 0.95352 10.35 2 1 Median 1.5152 1.2533 4.2615 3 0 Plateau NaN NaN NaN 0 0 Median 1.3842 1.1666 NaN 1 0 Median 81087000 38179000 42907000 19245000 9077900 10167000 845610 362830 482770 45770000 22695000 23075000 14986000 5939600 9046800 0 0 0 240110 104040 136070 18859 3631 19655;19656 98250;98251;98252;98253;98254;98255;98256;98257 99855;99856;99857;99858;99859;99860;99861;99862;99863 99856 1794 9 LALNVMADNFVFDGSSLPADVHR PTSALDEPVSHWRPRLALNVMADNFVFDGS NFVFDGSSLPADVHRYMKMIQLGKTVHYLP R L A H R Y 3 1 2 3 0 0 0 1 1 0 3 0 1 2 1 2 0 0 0 3 0 0 23 0 2487.2216 Q96KA5;G5E9Z2 Q96KA5 174 196 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes no 3 1.791E-13 60.735 By MS/MS 2 1.7623 1.4626 79.156 2 Median NaN NaN NaN 0 0 Median 1.7623 1.4626 79.156 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8455500 4143400 4312100 0 0 0 8455500 4143400 4312100 0 0 0 0 0 0 0 0 0 0 0 0 18860 3691 19657 98258;98259 99864 99864 0 LALPADIR QLLGVVPLSTPTEDKLALPADIRALQQHLC STPTEDKLALPADIRALQQHLCVVQLTRLL K L A I R A 2 1 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 8 0 867.5178 Q14CX7 Q14CX7 402 409 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.018519 47.849 By matching By matching By MS/MS 1 1 1 1.2546 1.345 26.916 3 Plateau 0.82155 0.81616 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2546 1.345 NaN 1 0 Median 1.0339 0.88063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6292700 2795900 3496900 1767700 877680 890070 0 0 0 2655700 1049500 1606100 1869300 868660 1000600 0 0 0 0 0 0 18861 2908 19658 98260;98261;98262 99865;99866 99866 2 LALPGHAESYNPPPEYLLSEEER NAVLGRHKMHVPAPKLALPGHAESYNPPPE SYNPPPEYLLSEEERLAWEQQEPGERKLSF K L A E R L 2 1 1 0 0 0 5 1 1 0 4 0 0 0 4 2 0 0 2 0 0 0 23 0 2610.2602 Q14137 Q14137 305 327 BOP1 Ribosome biogenesis protein BOP1 yes yes 3 8.752E-19 85.35 By MS/MS By matching 2 3 0.58845 0.59224 12.517 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56151 0.56525 6.5959 2 1 Median 0.79181 0.64451 16.821 3 0 Plateau 32386000 20243000 12143000 0 0 0 0 0 0 0 0 0 0 0 0 30518000 19189000 11329000 1867500 1054000 813480 18862 2856 19659 98263;98264;98265;98266;98267 99867;99868;99869;99870 99867 4 LALPPYLTPDAR AENRKKTMDKIIRGKLALPPYLTPDARDLV RGKLALPPYLTPDARDLVKKFLKRNPSQRI K L A A R D 2 1 0 1 0 0 0 0 0 0 3 0 0 0 3 0 1 0 1 0 0 0 12 0 1325.7343 Q9UBS0 Q9UBS0 286 297 RPS6KB2 Ribosomal protein S6 kinase beta-2 yes yes 2 0.00061737 67.334 By MS/MS By matching 2 1 1.0342 0.93836 12.655 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8956 0.91913 17.817 2 0 Median 1.0691 0.93836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3781100 2156700 1624400 0 0 0 0 0 0 3543900 2045100 1498800 237210 111560 125650 0 0 0 0 0 0 18863 4245 19660 98268;98269;98270 99871;99872 99871 2 LALPQSDASLLSR ______________________________ QRLALPQSDASLLSRDEVASLLFDPKEAAT R L A S R D 2 1 0 1 0 1 0 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 13 0 1369.7565 Q9H583;Q5T3Q7;Q6P664 Q9H583 11 23 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 4.8234E-07 107.83 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1.0619 0.88785 21.513 6 Median NaN NaN NaN 0 0 Median 1.0725 0.89164 NaN 1 0 Median 0.77292 0.85021 NaN 1 0 Median 1.6421 1.4621 NaN 1 0 Median 1.0844 1.1296 NaN 1 0 Median 1.0486 0.87968 0.70586 2 0 Median 13985000 7248200 6737300 0 0 0 1292700 661080 631630 5768700 3204200 2564500 119150 47143 72005 5885800 2903500 2982300 919080 432230 486850 18864 3086 19661 98271;98272;98273;98274;98275;98276 99873;99874;99875 99875 3 LALQALTEK KQEQQAFKEAADTERLALQALTEKLLRSEE AADTERLALQALTEKLLRSEESVSRLPEEI R L A E K L 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 985.5808 Q07065 Q07065 347 355 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00047757 122.19 By MS/MS By MS/MS 1 3 1.2563 1.0484 11.986 4 Median 0.98656 0.91153 NaN 1 0 Median 1.2669 1.0568 8.8764 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120970000 58554000 62414000 75025000 38350000 36675000 45942000 20204000 25739000 0 0 0 0 0 0 0 0 0 0 0 0 18865 2730 19662 98277;98278;98279;98280 99876;99877;99878;99879 99877 4 LALQLHPDRNPDDPQAQEK PRSASIKDIKKAYRKLALQLHPDRNPDDPQ LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE K L A E K F 2 1 1 3 0 3 1 0 1 0 3 1 0 0 3 0 0 0 0 0 0 0 19 1 2184.0923 Q9UBS4 Q9UBS4 48 66 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 3;4 2.9001E-08 77.027 By matching By MS/MS By MS/MS 1 2 2 0.64718 0.73964 24.087 5 Median NaN NaN NaN 0 0 Median 0.48717 0.45644 NaN 1 0 Median 0.6339 0.72446 2.9332 2 1 Median 0.9349 0.81026 6.3872 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 144450000 85511000 58943000 0 0 0 2695200 1396600 1298600 122110000 74835000 47276000 19647000 9279400 10368000 0 0 0 0 0 0 18866 4246 19663 98281;98282;98283;98284;98285 99880;99881;99882;99883;99884;99885 99880 6 LALQQDLTSMAPGLVIQAVR EVYIELFDQIDENLKLALQQDLTSMAPGLV DLTSMAPGLVIQAVRVTKPNIPEAIRRNYE K L A V R V 3 1 0 1 0 3 0 1 0 1 4 0 1 0 1 1 1 0 0 2 0 0 20 0 2123.1773 O94905;E5RHW4;E5RJ09 O94905 150 169 ERLIN2 Erlin-2 yes no 2;3 1.4131E-18 110.29 By matching By MS/MS By matching 1 2 1 1.3154 1.1466 21.599 4 Linear 0.81027 0.83038 NaN 1 0 Median 1.3213 1.1482 3.2053 2 0 Median 0.74302 0.76118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10838000 4619600 6218300 616630 319400 297230 9975800 4162200 5813600 245460 138020 107440 0 0 0 0 0 0 0 0 0 18867 848 19664 98286;98287;98288;98289 99886;99887;99888;99889 99887 4 LALQTIPEDLDLR KLCFDGIEIDILFARLALQTIPEDLDLRDD ARLALQTIPEDLDLRDDSLLKNLDIRCIRS R L A L R D 1 1 0 2 0 1 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 13 0 1495.8246 A0A0C4DGK1;G3XAH6;Q9NRJ5;P51003;H0YJ00 A0A0C4DGK1 173 185 PAPOLA;PAPOLB Poly(A) polymerase beta;Poly(A) polymerase alpha yes no 2 0.00050492 71.889 By MS/MS 1 0.97733 0.84778 NaN 1 Median NaN NaN NaN 0 0 Median 0.97733 0.84778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2544800 1186400 1358400 0 0 0 2544800 1186400 1358400 0 0 0 0 0 0 0 0 0 0 0 0 18868 249 19665 98290 99890;99891 99891 2 LALQTIPEDLDLRDDSLLK KLCFDGIEIDILFARLALQTIPEDLDLRDD TIPEDLDLRDDSLLKNLDIRCIRSLNGMRK R L A L K N 1 1 0 4 0 1 1 0 0 1 6 1 0 0 1 1 1 0 0 0 0 0 19 1 2167.1736 A0A0C4DGK1;G3XAH6;Q9NRJ5;P51003;H0YJ00 A0A0C4DGK1 173 191 PAPOLA;PAPOLB Poly(A) polymerase beta;Poly(A) polymerase alpha yes no 3 4.5735E-05 41.348 By matching By MS/MS By matching 1 1 1 0.70709 0.80925 9.1481 3 Median 0.69649 0.70762 NaN 1 0 Median 0.85186 0.84279 NaN 1 0 Median 0.70709 0.80925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20003000 10306000 9696600 716810 355150 361660 18766000 9635900 9130600 519340 314910 204420 0 0 0 0 0 0 0 0 0 18869 249 19666 98291;98292;98293 99892;99893 99893 2 LALSPLSLGK TTMATRTSPRLAAQKLALSPLSLGKENLAE LAAQKLALSPLSLGKENLAESSKPTAGGSR K L A G K E 1 0 0 0 0 0 0 1 0 0 4 1 0 0 1 2 0 0 0 0 0 0 10 0 997.61718 P49454 P49454 3020 3029 CENPF Centromere protein F yes yes 2 0.0057065 50.04 By MS/MS By matching 2 1 0.93728 0.86637 15.469 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81495 0.88888 21.776 2 0 Median 0.93987 0.86637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6080000 3131400 2948600 0 0 0 0 0 0 5830100 3024000 2806100 249860 107390 142470 0 0 0 0 0 0 18870 2383 19667 98294;98295;98296 99894 99894 1 LALSPLSLGKENLAESSKPTAGGSR TTMATRTSPRLAAQKLALSPLSLGKENLAE ENLAESSKPTAGGSRSQKVKVAQRSPVDSG K L A S R S 3 1 1 0 0 0 2 3 0 0 5 2 0 0 2 5 1 0 0 0 0 0 25 2 2482.3391 P49454 P49454 3020 3044 CENPF Centromere protein F yes yes 4 0.019215 14.457 By MS/MS 1 0.73888 0.9805 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73888 0.9805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6826500 4084400 2742100 0 0 0 0 0 0 6826500 4084400 2742100 0 0 0 0 0 0 0 0 0 18871 2383 19668 98297 99895 99895 1 LALSQAHSLVQAEAPR ALWEEQVLQKEKKDRLALSQAHSLVQAEAP ALSQAHSLVQAEAPR_______________ R L A P R - 4 1 0 0 0 2 1 0 1 0 3 0 0 0 1 2 0 0 0 1 0 0 16 0 1689.9162 Q9BSF4;K7ENF5 Q9BSF4 245 260 C19orf52 Uncharacterized protein C19orf52 yes no 3 3.6063E-05 53.565 By MS/MS By matching By matching 2 1 1 0.9886 0.93213 25.52 4 Median 0.81952 0.78523 9.4669 2 0 Median 1.5511 1.3172 NaN 1 0 Median 1.1038 1.0349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16963000 6808100 10155000 13528000 5562000 7965700 1896600 620190 1276400 1538900 625930 912920 0 0 0 0 0 0 0 0 0 18872 3812 19669 98298;98299;98300;98301 99896 99896 1 LALSQNQQSSGAAGPTGK LLAEVERRIRRGHARLALSQNQQSSGAAGP SQNQQSSGAAGPTGKNEEKIQVLTDKIDVL R L A G K N 3 0 1 0 0 3 0 3 0 0 2 1 0 0 1 3 1 0 0 0 0 0 18 0 1713.8646 J3KPP4;O95232;D6RDI2 J3KPP4 107 124 LUC7L3 Luc7-like protein 3 yes no 2 2.1619E-14 124.86 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 1.0429 1.0038 36.434 9 Median 1.0454 1.03 NaN 1 0 Median 1.0824 0.93291 10.364 2 2 Median 1.0388 1.0325 2.7826 2 0 Median 1.277 1.0954 NaN 1 0 Median 0.58306 0.55532 NaN 1 0 Median 0.74613 0.61111 67.656 2 0 Median 39435000 21566000 17870000 810700 341530 469160 3396600 1700800 1695800 15570000 7719200 7850400 5137600 2510700 2626800 4758400 2997400 1761000 9762600 6296200 3466400 18873 1309 19670 98302;98303;98304;98305;98306;98307;98308;98309;98310 99897;99898;99899;99900;99901;99902;99903;99904;99905;99906;99907;99908;99909 99907 13 LALSQNQQSSGAAGPTGKNEEK LLAEVERRIRRGHARLALSQNQQSSGAAGP QSSGAAGPTGKNEEKIQVLTDKIDVLLQQI R L A E K I 3 0 2 0 0 3 2 3 0 0 2 2 0 0 1 3 1 0 0 0 0 0 22 1 2214.0877 J3KPP4;O95232;D6RDI2 J3KPP4 107 128 LUC7L3 Luc7-like protein 3 yes no 3 2.0421E-14 86.727 By matching By MS/MS By MS/MS 1 1 1 0.98763 1.0538 9.6266 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84579 0.89073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98763 1.0538 NaN 1 0 Median 1.1791 1.0509 NaN 1 0 Median 9194200 4494400 4699800 0 0 0 0 0 0 1188900 627670 561190 0 0 0 5951700 2950900 3000900 2053600 915810 1137800 18874 1309 19671 98311;98312;98313 99910;99911;99912;99913 99913 4 LALSVGTDK HKGQVTFLSIHPSGKLALSVGTDKTLRTWN IHPSGKLALSVGTDKTLRTWNLVEGRSAFI K L A D K T 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 902.5073 Q9NWT1 Q9NWT1 137 145 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 2 0.0017805 77.732 By matching By MS/MS By matching 1 2 1 1.3286 1.1616 16.963 4 Median NaN NaN NaN 0 0 Median 1.4756 1.2422 NaN 1 0 Median 1.1024 1.1294 27.667 2 0 Median 1.2703 1.0863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14900000 5800600 9099100 0 0 0 7439900 2712000 4728000 5979900 2416500 3563400 1479800 672070 807760 0 0 0 0 0 0 18875 4150 19672 98314;98315;98316;98317 99914 99914 1 LALVDFGSR GSGRITAAVIEHLERLALVDFGSREAVARL IEHLERLALVDFGSREAVARLEKAIAFADR R L A S R E 1 1 0 1 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 9 0 976.53418 F8VRU3;H0YIV9;O43716 F8VRU3 43 51 GATC Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial yes no 2 0.0014585 81.296 By MS/MS By matching 1 1 1.1158 1.0118 6.1395 2 Median 0.99523 0.96877 NaN 1 0 Median 1.251 1.0566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8047700 3740000 4307700 6885500 3192300 3693200 1162200 547700 614510 0 0 0 0 0 0 0 0 0 0 0 0 18876 1063 19673 98318;98319 99915 99915 1 LALVEENGIFELLR TGAMRNLIYDNADNKLALVEENGIFELLRT KLALVEENGIFELLRTLREQDDELRKNVTG K L A L R T 1 1 1 0 0 0 3 1 0 1 4 0 0 1 0 0 0 0 0 1 0 0 14 0 1614.8981 Q9Y446 Q9Y446 397 410 PKP3 Plakophilin-3 yes yes 2 0.0082641 35.414 By matching By MS/MS 1 2 0.73691 0.77008 31.74 3 Median NaN NaN NaN 0 0 Median 1.4172 1.2981 NaN 1 0 Median 0.73331 0.7505 3.6412 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2790700 1379700 1411000 0 0 0 565240 270150 295080 2225500 1109600 1115900 0 0 0 0 0 0 0 0 0 18877 4437 19674 98320;98321;98322 99916 99916 1 LALVFNIPLHQINQVYR AIYLEEMIASEVARKLALVFNIPLHQINQV LVFNIPLHQINQVYRQGPTGIHILVSDQMV K L A Y R Q 1 1 2 0 0 2 0 0 1 2 3 0 0 1 1 0 0 0 1 2 0 0 17 0 2037.1524 Q9NZI7 Q9NZI7 482 498 UBP1 Upstream-binding protein 1 yes yes 3 6.3176E-06 72.417 By MS/MS By matching 1 2 0.92312 0.8654 2.5663 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85402 0.84983 NaN 1 0 Median 0.9978 0.88124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18463000 9823000 8640300 0 0 0 0 0 0 18317000 9735000 8581700 146680 88048 58629 0 0 0 0 0 0 18878 4187 19675 98323;98324;98325 99917 99917 1 LALVISELEGK GREKFKSRGVGELARLALVISELEGKAQQ_ ELARLALVISELEGKAQQ____________ R L A G K A 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1170.686 A2AE48;Q12899 A2AE48 235 245 TRIM26 Tripartite motif-containing protein 26 yes no 2 0.00019545 75.378 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.97869 0.84167 34.239 5 Median 0.97869 0.93959 NaN 1 0 Median 1.0847 0.92924 NaN 1 0 Median 0.42205 0.41184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93471 0.78564 9.7427 2 0 Median 20191000 8928700 11263000 4153700 2217100 1936700 3665400 1631400 2034000 9992600 3950600 6042000 0 0 0 0 0 0 2379400 1129600 1249800 18879 498 19676 98326;98327;98328;98329;98330 99918;99919;99920;99921;99922 99921 5 LALVNNTQPK AIWAGLMAACHADDKLALVNNTQPKRIDLY HADDKLALVNNTQPKRIDLYLALLSAVSAS K L A P K R 1 0 2 0 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 10 0 1096.6241 Q6PGP7 Q6PGP7 1286 1295 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.056985 42.599 By MS/MS 1 1.1758 1.0264 NaN 1 Median NaN NaN NaN 0 0 Median 1.1758 1.0264 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1130500 491470 639040 0 0 0 1130500 491470 639040 0 0 0 0 0 0 0 0 0 0 0 0 18880 3169 19677 98331 99923 99923 1 LALVTGASGGIGAAVAR ______________________________ LVTGASGGIGAAVARALVQQGLKVVGCART R L A A R A 5 1 0 0 0 0 0 4 0 1 2 0 0 0 0 1 1 0 0 2 0 0 17 0 1482.8518 A0A087WYV4;Q6UWP2 A0A087WYV4 13 29 DHRS11 Dehydrogenase/reductase SDR family member 11 yes no 2 2.8525E-06 85.288 By MS/MS By matching 1 1 0.77312 0.69401 15.288 2 Median 0.66001 0.62289 NaN 1 0 Median 0.90561 0.77324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5198500 2950900 2247600 4871400 2789200 2082200 327070 161720 165340 0 0 0 0 0 0 0 0 0 0 0 0 18881 89 19678 98332;98333 99924;99925 99924 2 LALVTGGEIASTFDHPELVK GVMAIEHADFAGVERLALVTGGEIASTFDH GGEIASTFDHPELVKLGSCKLIEEVMIGED R L A V K L 2 0 0 1 0 0 2 2 1 1 3 1 0 1 1 1 2 0 0 2 0 0 20 0 2096.1154 P78371;F5GWF6;F8VQ14 P78371 323 342 CCT2 T-complex protein 1 subunit beta yes no 3 5.9972E-09 77.39 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 3 1.1333 1.03 34.05 9 Median 0.95997 0.89016 13.764 2 0 Median 1.5144 1.2916 32.013 2 0 Median 1.1333 1.0984 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9659 1.8739 NaN 1 0 Median 1.3111 1.0779 25.95 3 0 Plateau 197580000 90044000 107540000 63630000 32607000 31023000 102950000 42911000 60035000 18625000 8979100 9645800 0 0 0 4069400 1491100 2578300 8314800 4055500 4259400 18882 2644 19679 98334;98335;98336;98337;98338;98339;98340;98341;98342 99926;99927;99928;99929 99929 4 LALYQTAIESAR PEAPHPGLETTLQERLALYQTAIESARQAG QERLALYQTAIESARQAGDSAKMRRYDRGL R L A A R Q 3 1 0 0 0 1 1 0 0 1 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1334.7194 Q6P1N0 Q6P1N0 144 155 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 3.0793E-06 110.14 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.94129 1.017 97.401 7 Median 1.225 1.235 19.019 2 0 Median NaN NaN NaN 0 0 Median 0.92472 1.017 NaN 1 0 Median 3.0911 2.9437 183.89 2 0 Median NaN NaN NaN 0 0 Median 0.80537 0.67148 1.2013 2 0 Median 23317000 10784000 12532000 13472000 6204200 7268100 0 0 0 7062100 3580200 3481900 2401100 797500 1603600 0 0 0 381130 202460 178670 18883 3153 19680 98343;98344;98345;98346;98347;98348;98349 99930;99931;99932;99933 99930 2 LAMAALQEK TRSEREIEQLKEHLRLAMAALQEKESMRNS LKEHLRLAMAALQEKESMRNSLAE______ R L A E K E 3 0 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 973.52665 Q9H2D6 Q9H2D6 2348 2356 TRIOBP TRIO and F-actin-binding protein yes yes 2 0.013082 69.825 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18884 3941 19681 98350 99934 99934 1 LAMENNIK EIKGRKTLATPAVRRLAMENNIKLSEVVGS ATPAVRRLAMENNIKLSEVVGSGKDGRILK R L A I K L 1 0 2 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 931.4797 P11182;Q5VVL7 P11182 180 187 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.023052 44.447 By MS/MS 1 1.526 1.3605 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.526 1.3605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1649900 590890 1059000 0 0 0 0 0 0 0 0 0 1649900 590890 1059000 0 0 0 0 0 0 18885 1955 19682 98351 99935 99935 1 LAMLEEDLLALK VYRAGIATHFVDSEKLAMLEEDLLALKSPS SEKLAMLEEDLLALKSPSKENIASVLENYH K L A L K S 2 0 0 1 0 0 2 0 0 0 5 1 1 0 0 0 0 0 0 0 0 0 12 0 1357.7527 Q6NVY1;F8W8A6 Q6NVY1 222 233 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 2 0.0058278 40.002 By matching By matching By MS/MS 1 1 1 2.3454 2 59.046 3 Plateau NaN NaN NaN 0 0 Median 1.4707 1.2597 NaN 1 0 Median 1.0854 1.0585 NaN 1 0 Median 3.7401 3.1754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10465000 3220200 7245100 0 0 0 4716900 1860800 2856200 511310 223320 287990 5237000 1136100 4100900 0 0 0 0 0 0 18886 3146 19683 98352;98353;98354 99936 99936 1 LAMNILAQNASR VQDDTAKVWSEELFKLAMNILAQNASRNTF LFKLAMNILAQNASRNTFLRKAYTKLKLQV K L A S R N 3 1 2 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 12 0 1300.6922 Q01970 Q01970 138 149 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 5.6046E-05 94.692 By matching By MS/MS By MS/MS 2 1 1 1.2228 1.1818 18.619 4 Median 1.1673 1.1335 31.066 2 0 Median NaN NaN NaN 0 0 Median 1.1338 1.2469 NaN 1 1 Median 1.3187 1.1202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23168000 10265000 12903000 10568000 4485300 6082500 0 0 0 7975700 3557400 4418200 4624800 2222700 2402100 0 0 0 0 0 0 18887 2695 19684 98355;98356;98357;98358 99937;99938;99939 99939 3 LAMPKDFRNWQAS ASASQVARTAGQTWKLAMPKDFRNWQAS__ WKLAMPKDFRNWQAS_______________ K L A A S - 2 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 0 1 0 0 0 0 13 2 1562.7664 F8WCW8 F8WCW8 85 97 NOSTRIN yes yes 2 0.0016741 48.283 By matching By MS/MS By matching 1 2 2 0.99618 0.91081 13.3 5 Median NaN NaN NaN 0 0 Median 1.1187 1.0167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84233 0.89428 2.5909 2 0 Median 1.1697 1.0316 21.698 2 0 Median 320150000 165540000 154610000 0 0 0 1743600 726050 1017600 0 0 0 0 0 0 296140000 155680000 140460000 22265000 9132300 13133000 18888 1097 19685 98359;98360;98361;98362;98363 99940 99940 369 1 LAMQEFMILPVGAANFR PAFNVINGGSHAGNKLAMQEFMILPVGAAN MQEFMILPVGAANFREAMRIGAEVYHNLKN K L A F R E 3 1 1 0 0 1 1 1 0 1 2 0 2 2 1 0 0 0 0 1 0 0 17 0 1906.9797 P06733;A0A2R8Y6G6;K7EM90 P06733 163 179 ENO1 Alpha-enolase;Enolase yes no 2;3 1.8556E-18 163.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 18 12 10 5 4 1 1.0175 0.91448 14.09 48 Median 1.0271 0.96126 14.952 17 4 Median 0.99604 0.84975 8.4441 12 2 Median 1.1597 0.97464 11.486 9 0 Linear 1.0494 0.91337 4.2938 5 0 Median 0.92367 0.95548 23.024 4 0 Median 1.14 1.0061 NaN 1 0 Median 891120000 451680000 439440000 438230000 229850000 208390000 337530000 166000000 171530000 104930000 50816000 54115000 7333300 3549500 3783900 2872500 1386200 1486300 220250 82260 137990 18889 1873 19686;19687;19688 98364;98365;98366;98367;98368;98369;98370;98371;98372;98373;98374;98375;98376;98377;98378;98379;98380;98381;98382;98383;98384;98385;98386;98387;98388;98389;98390;98391;98392;98393;98394;98395;98396;98397;98398;98399;98400;98401;98402;98403;98404;98405;98406;98407;98408;98409;98410;98411;98412;98413 99941;99942;99943;99944;99945;99946;99947;99948;99949;99950;99951;99952;99953;99954;99955;99956;99957;99958;99959;99960;99961;99962;99963;99964;99965;99966;99967;99968;99969;99970;99971;99972;99973;99974;99975;99976;99977;99978;99979;99980;99981;99982;99983;99984;99985;99986;99987;99988 99947 637;638 48 LAMQEFMILPVGAESFR PAFNVINGGSHAGNKLAMQEFMILPVGAES MQEFMILPVGAESFRDAMRLGAEVYHTLKG K L A F R D 2 1 0 0 0 1 2 1 0 1 2 0 2 2 1 1 0 0 0 1 0 0 17 0 1937.9743 P09104 P09104 163 179 ENO2 Gamma-enolase yes yes 2 2.0884E-05 62.924 By MS/MS 2 1.0902 0.94224 5.3232 2 Median NaN NaN NaN 0 0 Median 1.0902 0.94224 5.3232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2147300 1109300 1038000 0 0 0 2147300 1109300 1038000 0 0 0 0 0 0 0 0 0 0 0 0 18890 1911 19689 98414;98415 99989;99990 99989 2 LAMQLEEQASR AKHFSALRDVIKALRLAMQLEEQASRQISS KALRLAMQLEEQASRQISSKKRPQ______ R L A S R Q 2 1 0 0 0 2 2 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1274.6289 Q99661 Q99661 706 716 KIF2C Kinesin-like protein KIF2C yes yes 2 0.00013175 142.43 By MS/MS By MS/MS 3 1 1.0682 1.01 15.751 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9975 1.0118 19.289 3 0 Median 1.1702 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30125000 13333000 16792000 0 0 0 0 0 0 28682000 12662000 16020000 1443500 671200 772270 0 0 0 0 0 0 18891 3761 19690;19691 98416;98417;98418;98419 99991;99992;99993;99994;99995 99992 1821 5 LANDIEATAVR ESPLVSAWSEELISKLANDIEATAVRAVRR LISKLANDIEATAVRAVRRFGQFHLALSGG K L A V R A 3 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1171.6197 R4GMU1;O95479 R4GMU1 578 588 H6PD GDH/6PGL endoplasmic bifunctional protein;Glucose 1-dehydrogenase;6-phosphogluconolactonase yes no 2 0.00011196 123.63 By MS/MS By MS/MS By matching 2 2 1 0.9016 0.91157 43.164 5 Median 0.98815 0.98234 10.575 2 0 Median 1.1422 0.99287 67.758 2 0 Median NaN NaN NaN 0 0 Median 0.65608 0.54956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15677000 7968000 7709400 4884200 2473500 2410700 6183500 2917300 3266200 0 0 0 4609600 2577100 2032500 0 0 0 0 0 0 18892 1776 19692 98420;98421;98422;98423;98424 99996;99997;99998 99997 3 LANFASLSDLHK KEIWLPPPQFYEVRRLANFASLSDLHKFCL VRRLANFASLSDLHKFCLGRALEGLERWLP R L A H K F 2 0 1 1 0 0 0 0 1 0 3 1 0 1 0 2 0 0 0 0 0 0 12 0 1314.6932 A8MXV4 A8MXV4 267 278 NUDT19 Nucleoside diphosphate-linked moiety X motif 19, mitochondrial yes yes 3 0.028318 21.301 By MS/MS 1 0.81232 0.75702 NaN 1 Median 0.81232 0.75702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8646300 4596500 4049700 8646300 4596500 4049700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18893 548 19693 98425 99999 99999 1 LANIDEEMLQK AYLLYAFTRIRSIARLANIDEEMLQKAARE SIARLANIDEEMLQKAARETKILLDHEKEW R L A Q K A 1 0 1 1 0 1 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1302.649 P54136 P54136 547 557 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.00019975 96.331 By MS/MS By MS/MS 2 1 1.0968 0.9444 4.4596 3 Median 1.0389 0.98062 5.3234 2 1 Median 1.1289 0.94084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76156000 34740000 41416000 47160000 22520000 24640000 28996000 12220000 16775000 0 0 0 0 0 0 0 0 0 0 0 0 18894 2480 19694;19695 98426;98427;98428 100000;100001;100002;100003;100004 100000 1165 5 LANILFTQELAR GEKFYNAGLAYCHSKLANILFTQELARRLK HSKLANILFTQELARRLKGSGVTTYSVHPG K L A A R R 2 1 1 0 0 1 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1387.7823 Q8TC12;G3V2G6;H0YIZ8;G3V234;H0YJ46 Q8TC12 207 218 RDH11 Retinol dehydrogenase 11 yes no 2 0.0011673 56.258 By MS/MS By matching 1 1 1.1625 1.0347 5.4228 2 Median 1.1486 1.0752 NaN 1 0 Median 1.1765 0.99579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8046600 3643100 4403600 6652400 2987400 3665000 1394200 655650 738550 0 0 0 0 0 0 0 0 0 0 0 0 18895 3464 19696 98429;98430 100005;100006 100006 2 LANILFTR SEQSYNKSFCYSRSKLANILFTRELARRLE FCYSRSKLANILFTRELARRLEGTNVTVNV K L A T R E 1 1 1 0 0 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 8 0 946.56 Q9HBH5 Q9HBH5 222 229 RDH14 Retinol dehydrogenase 14 yes yes 2 0.0023123 109.86 By MS/MS By matching 1 1 1.454 1.3005 8.6888 2 Median 1.3009 1.223 NaN 1 0 Median 1.625 1.3829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6753900 2733300 4020500 5940500 2434700 3505800 813390 298650 514740 0 0 0 0 0 0 0 0 0 0 0 0 18896 4018 19697 98431;98432 100007 100007 1 LANLINAEER KKGCKRYWTKTIEKKLANLINAEERRDVSL TIEKKLANLINAEERRDVSLKDCMRRLFYN K L A E R R 2 1 2 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1141.6091 P52701;A0A494C0M1;A0A087WWJ1 P52701 1015 1024 MSH6 DNA mismatch repair protein Msh6 yes no 2 5.3193E-07 159.37 By MS/MS By MS/MS By MS/MS 1 1 3 0.78031 0.79267 16.624 4 Median 0.79218 0.74349 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76862 0.84511 NaN 1 0 Median 0.93056 0.80603 27.28 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42090000 22399000 19691000 15706000 8464400 7241800 0 0 0 12878000 7294200 5583500 13506000 6640300 6865800 0 0 0 0 0 0 18897 2453 19698 98433;98434;98435;98436;98437 100008;100009;100010;100011;100012;100013;100014 100012 7 LANLINAEERR KKGCKRYWTKTIEKKLANLINAEERRDVSL IEKKLANLINAEERRDVSLKDCMRRLFYNF K L A R R D 2 2 2 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1297.7102 P52701;A0A494C0M1;A0A087WWJ1 P52701 1015 1025 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 3.7047E-05 99.522 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.92373 0.98602 12.632 6 Median 0.91851 0.98226 22.901 2 0 Median 1.1913 1.0118 NaN 1 0 Median 0.76018 0.92454 5.4573 2 0 Median 1.2327 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25601000 13126000 12475000 10116000 4821200 5294900 791430 362750 428680 12552000 7024100 5528300 2141400 918010 1223400 0 0 0 0 0 0 18898 2453 19699 98438;98439;98440;98441;98442;98443 100015;100016;100017;100018;100019;100020;100021 100021 7 LANLPEEVIQK IKGACPKSYGFNAARLANLPEEVIQKGHRK NAARLANLPEEVIQKGHRKAREFEKMNQSL R L A Q K G 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1252.7027 P52701;A0A494C0M1;A0A087WYT6 P52701 1305 1315 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00016938 91.867 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 4 4 2 2 0.79709 0.76701 26.352 17 Median 0.79394 0.75411 41.7 2 0 Median 0.64744 0.55396 28.073 3 0 Median 0.57583 0.60047 23.987 4 0 Median 0.89515 0.81689 17.806 4 0 Median 0.89233 0.94027 2.6606 2 0 Median 1.0015 0.84852 10.998 2 0 Median 142490000 83243000 59243000 41846000 25687000 16160000 8926200 5271000 3655200 73415000 43551000 29864000 12657000 6021000 6636400 4382100 2151200 2230900 1258400 562050 696320 18899 2453 19700 98444;98445;98446;98447;98448;98449;98450;98451;98452;98453;98454;98455;98456;98457;98458;98459;98460 100022;100023;100024;100025;100026;100027;100028;100029;100030;100031 100022 10 LANQAADYFGDAFK LKATRDKMKDAIIAKLANQAADYFGDAFKQ KLANQAADYFGDAFKQCQYKDTLPKEVFPV K L A F K Q 4 0 1 2 0 1 0 1 0 0 1 1 0 2 0 0 0 0 1 0 0 0 14 0 1529.7151 Q8WUM4;A0A3B3IT07;F8WDK9 Q8WUM4 216 229 PDCD6IP Programmed cell death 6-interacting protein yes no 2 0.00046163 69.721 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1405 1.0256 26.624 5 Median 0.88347 0.84374 37.659 2 0 Median 1.1405 1.0099 NaN 1 0 Median 1.2103 1.3346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2296 1.0256 NaN 1 0 Median 26305000 12481000 13823000 18473000 9177700 9295600 1908800 859310 1049500 5243000 2116300 3126600 0 0 0 0 0 0 679540 327790 351750 18900 3493 19701 98461;98462;98463;98464;98465 100032;100033;100034;100035 100035 4 LANRAPEPTPQQVAQQQ VAVRLQMSERNILSRLANRAPEPTPQQVAQ NRAPEPTPQQVAQQQ_______________ R L A Q Q - 3 1 1 0 0 5 1 0 0 0 1 0 0 0 3 0 1 0 0 1 0 0 17 1 1874.9599 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0 Q14839 1896 1912 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 7.9758E-07 85.522 By MS/MS By MS/MS By MS/MS 2 3 2 0.65715 0.65142 15.232 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62426 0.68306 6.7055 2 0 Median NaN NaN NaN 0 0 Median 0.57632 0.59121 23.893 3 0 Median 0.76703 0.63411 9.9018 2 1 Median 44456000 27416000 17040000 0 0 0 0 0 0 21217000 13217000 7999200 0 0 0 20574000 12840000 7734200 2665200 1359000 1306200 18901 246 19702 98466;98467;98468;98469;98470;98471;98472 100036;100037;100038;100039;100040;100041;100042 100042 7 LANVMMGPYR VGQAAIRGLVAEGHRLANVMMGPYRQDLLA AEGHRLANVMMGPYRQDLLAKCDRVDQLTA R L A Y R Q 1 1 1 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 1 1 0 0 10 0 1150.5627 P18206 P18206 529 538 VCL Vinculin yes yes 2 0.00035038 98.299 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.85934 0.73845 10.596 4 Median 0.90213 0.86799 NaN 1 0 Median 0.93998 0.7798 NaN 1 0 Median 0.63074 0.69303 NaN 1 0 Median 0.81858 0.69929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51492000 27073000 24419000 23566000 12808000 10757000 23675000 12096000 11580000 3423100 1757200 1665800 828030 411820 416200 0 0 0 0 0 0 18902 2057 19703 98473;98474;98475;98476 100043;100044;100045;100046 100046 4 LANVMMGPYRQDLLAK VGQAAIRGLVAEGHRLANVMMGPYRQDLLA ANVMMGPYRQDLLAKCDRVDQLTAQLADLA R L A A K C 2 1 1 1 0 1 0 1 0 0 3 1 2 0 1 0 0 0 1 1 0 0 16 1 1818.9484 P18206 P18206 529 544 VCL Vinculin yes yes 2;3 0.00086718 36.638 By MS/MS By matching By MS/MS 2 1 1 0.73009 0.78155 23.962 4 Median 0.75012 0.78155 20.802 2 0 Median 0.61656 0.56754 NaN 1 0 Median 0.82264 0.93371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28174000 13664000 14510000 24696000 11651000 13045000 236660 131630 105030 3241100 1880700 1360500 0 0 0 0 0 0 0 0 0 18903 2057 19704 98477;98478;98479;98480 100047;100048;100049;100050 100048 4 LAPALATGNTVVMK QIIPWNFPLVMQGWKLAPALATGNTVVMKV KLAPALATGNTVVMKVAEQTPLSALYLASL K L A M K V 3 0 1 0 0 0 0 1 0 0 2 1 1 0 1 0 2 0 0 2 0 0 14 0 1384.7748 P30837 P30837 196 209 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 1.0543E-05 90.05 By MS/MS By matching 1 1 1.1135 0.98795 14.348 2 Median 0.96646 0.89263 NaN 1 0 Median 1.283 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23987000 11668000 12319000 19913000 9871300 10042000 4073800 1796600 2277200 0 0 0 0 0 0 0 0 0 0 0 0 18904 2199 19705 98481;98482 100051;100052 100052 2 LAPASNMTSQRPVSSTGINFDNPSVQK PGAPSQGLFGQPSSRLAPASNMTSQRPVSS VSSTGINFDNPSVQKALDTLIQSGPALSHL R L A Q K A 2 1 3 1 0 2 0 1 0 1 1 1 1 1 3 5 2 0 0 2 0 0 27 1 2845.4029 Q9HCD5 Q9HCD5 516 542 NCOA5 Nuclear receptor coactivator 5 yes yes 3 7.4059E-14 60.104 By MS/MS By matching By MS/MS 1 1 3 0.5482 0.5951 12.826 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.516 0.54934 NaN 1 0 Median 0.7292 0.6686 NaN 1 0 Median 0.5482 0.5951 15.208 3 0 Median NaN NaN NaN 0 0 Median 60888000 38192000 22696000 0 0 0 0 0 0 39075000 24419000 14657000 2700700 1516200 1184500 19112000 12257000 6855100 0 0 0 18905 4028 19706 98483;98484;98485;98486;98487 100053;100054;100055;100056 100053 4 LAPDYDALDVANK NTLIRPDGEKKAYVRLAPDYDALDVANKIG VRLAPDYDALDVANKIGII___________ R L A N K I 3 0 1 3 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 13 0 1403.6933 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 142 154 RPL23A 60S ribosomal protein L23a yes no 2 6.7811E-07 104.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 2 6 4 4 1.0422 0.87823 15.812 23 Median 0.8834 0.82214 8.8329 2 0 Median 1.0422 0.86051 13.111 5 1 Median 0.83934 0.79823 0.13846 2 0 Median 1.1518 0.90681 17.799 6 0 Median 0.92328 0.95111 23.729 4 1 Median 1.0792 0.89138 6.5536 4 0 Median 934940000 467430000 467510000 373550000 187070000 186480000 139320000 66226000 73093000 154460000 81364000 73099000 20333000 9347700 10985000 172750000 88200000 84547000 74524000 35220000 39305000 18906 544 19707 98488;98489;98490;98491;98492;98493;98494;98495;98496;98497;98498;98499;98500;98501;98502;98503;98504;98505;98506;98507;98508;98509;98510;98511 100057;100058;100059;100060;100061;100062;100063;100064;100065;100066;100067;100068;100069;100070;100071;100072;100073;100074;100075;100076;100077;100078;100079;100080;100081;100082;100083;100084;100085 100070 29 LAPEFAKR DFTPVCTTELGRAAKLAPEFAKRNVKLIAL ELGRAAKLAPEFAKRNVKLIALSIDSVEDH K L A K R N 2 1 0 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 8 1 930.5287 P30041 P30041 57 64 PRDX6 Peroxiredoxin-6 yes yes 2 0.01872 53.554 By MS/MS By MS/MS By matching 2 1 1 1.0762 1.1148 11.839 4 Median 1.0306 1.0449 15.053 2 0 Median 1.324 1.2348 NaN 1 0 Median 1.0446 1.0692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10525000 4928400 5596400 6956600 3415900 3540700 2518800 1060500 1458200 1049500 451990 597490 0 0 0 0 0 0 0 0 0 18907 2179 19708 98512;98513;98514;98515 100086;100087;100088 100087 3 LAPEYEAAATR MLVEFFAPWCGHCKRLAPEYEAAATRLKGI HCKRLAPEYEAAATRLKGIVPLAKVDCTAN R L A T R L 4 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 11 0 1190.5932 P30101;H7BZJ3 P30101 63 73 PDIA3 Protein disulfide-isomerase A3 no no 2 0.00011336 127.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1 0.96715 0.87831 16.122 10 Median 0.93129 0.86839 3.5859 3 2 Median 0.99404 0.82859 3.8451 4 1 Median 0.91402 0.90652 NaN 1 0 Median 1.069 0.91368 NaN 1 0 Median 1.4056 1.4133 NaN 1 0 Median NaN NaN NaN 0 0 Median 243910000 120550000 123360000 93861000 49400000 44462000 95295000 44904000 50391000 25195000 12042000 13153000 26059000 13012000 13047000 3501200 1194800 2306400 0 0 0 18908 2189;1251 19709 98516;98517;98518;98519;98520;98521;98522;98523;98524;98525 100089;100090;100091;100092;100093;100094;100095;100096;100097;100098;100099;100100 100097 12 LAPEYEK ILVEFYAPWCGHCKKLAPEYEKAAKELSKR PWCGHCKKLAPEYEKAAKELSKRSPPIPLA K L A E K A 1 0 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 7 0 848.42798 P13667;A0A499FI48 P13667 212 218 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.026054 53.554 By MS/MS By MS/MS By matching 1 1 1 1.0406 0.91226 10.342 3 Plateau 0.83726 0.82995 NaN 1 0 Median 1.0406 0.91226 NaN 1 0 Median 0.96084 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7612700 3709400 3903300 1749400 937410 811970 3747500 1759500 1988000 2115800 1012500 1103400 0 0 0 0 0 0 0 0 0 18909 1993 19710 98526;98527;98528 100101;100102 100102 2 LAPGGHVGR PGITLLNVSKLNILKLAPGGHVGRFCIWTE KLNILKLAPGGHVGRFCIWTESAFRKLDEL K L A G R F 1 1 0 0 0 0 0 3 1 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 862.47733 P36578;H3BM89 P36578 240 248 RPL4 60S ribosomal protein L4 yes no 2 0.0175 41.652 By MS/MS By MS/MS By matching 1 1 1 1.135 0.97377 11.907 3 Plateau 1.0137 0.98894 NaN 1 0 Median 1.135 0.97377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79552 0.79879 NaN 1 0 Median NaN NaN NaN 0 0 Median 3380100 1523300 1856800 521110 242370 278730 2602800 1158800 1443900 0 0 0 0 0 0 256260 122090 134170 0 0 0 18910 2260 19711 98529;98530;98531 100103;100104 100104 2 LAPGTIVEVWK KGSIVWQEVFDDKAKLAPGTIVEVWKDSAY DKAKLAPGTIVEVWKDSAYPEELSRVTASG K L A W K D 1 0 0 0 0 0 1 1 0 1 1 1 0 0 1 0 1 1 0 2 0 0 11 0 1211.6914 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 415 425 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2 0.00060416 66.299 By MS/MS By matching 2 1 1.023 0.97571 11.991 3 Median 0.94881 0.89085 12.867 2 1 Median NaN NaN NaN 0 0 Median 1.084 1.0199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53245000 27494000 25751000 46501000 24094000 22407000 0 0 0 6743900 3399900 3344000 0 0 0 0 0 0 0 0 0 18911 1888 19712 98532;98533;98534 100105;100106;100107 100106 3 LAPGTIVEVWKDSAYPEELSR KGSIVWQEVFDDKAKLAPGTIVEVWKDSAY VEVWKDSAYPEELSRVTASGFPVILSAPWY K L A S R V 2 1 0 1 0 0 3 1 0 1 2 1 0 0 2 2 1 1 1 2 0 0 21 1 2359.206 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 415 435 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 3 5.3421E-07 48.229 By MS/MS 1 0.88507 0.92651 NaN 1 Median 0.88507 0.92651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6824900 3842200 2982700 6824900 3842200 2982700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18912 1888 19713 98535 100108;100109;100110 100109 3 LAPGYINQEVVR SNVPHYQNLRVFYARLAPGYINQEVVRLYL YARLAPGYINQEVVRLYLAVLSDRTPQNLH R L A V R L 1 1 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 1 2 0 0 12 0 1357.7354 H0Y6I6;Q96ME1 H0Y6I6 121 132 FBXL18 F-box/LRR-repeat protein 18 yes no 2 0.00026027 83.862 By matching By MS/MS 1 1 0.80102 0.80401 29.348 2 Median 0.66048 0.65333 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97147 0.98943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13267000 7041200 6226100 2026000 1274600 751400 0 0 0 11241000 5766600 5474700 0 0 0 0 0 0 0 0 0 18913 1157 19714 98536;98537 100111 100111 1 LAPITSDPTEATAVGAVEASFK EAAIYHLQLFEELRRLAPITSDPTEATAVG PTEATAVGAVEASFKCCSGAIIVLTKSGRS R L A F K C 5 0 0 1 0 0 2 1 0 1 1 1 0 1 2 2 3 0 0 2 0 0 22 0 2174.1107 P14618;B4DNK4 P14618 401 422 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 2;3 8.1089E-33 170.11 By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 0.81203 0.73932 13.949 12 Median 0.79974 0.73932 15.353 4 0 Median 0.82287 0.70429 16.551 5 0 Median 0.84758 0.82292 5.6531 2 0 Median 0.7647 0.67228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 235040000 125020000 110030000 168440000 89545000 78897000 30864000 16421000 14443000 35563000 18962000 16601000 173300 88066 85234 0 0 0 0 0 0 18914 2005 19715 98538;98539;98540;98541;98542;98543;98544;98545;98546;98547;98548;98549 100112;100113;100114;100115;100116;100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128;100129 100114 18 LAPITYPQGLAMAR LRDDKDTIERLRDKKLAPITYPQGLAMARE KLAPITYPQGLAMAREIGSVKYLECSALTQ K L A A R E 3 1 0 0 0 1 0 1 0 1 2 0 1 0 2 0 1 0 1 0 0 0 14 0 1500.8123 P60763;J3KSC4;J3QLK0 P60763 134 147 RAC3 Ras-related C3 botulinum toxin substrate 3 yes no 2 1.2919E-06 87.298 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18915 2528 19716 98550 100130 100130 1 LAPLNEGGTAELLNK TSSNKKPILDVTKPKLAPLNEGGTAELLNK LAPLNEGGTAELLNKEILRLQEENEKLKSR K L A N K E 2 0 2 0 0 0 2 2 0 0 4 1 0 0 1 0 1 0 0 0 0 0 15 0 1538.8304 Q9NQ48;H7C488 Q9NQ48 138 152 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 2 0.00032457 64.439 By MS/MS 1 0.60054 0.56257 NaN 1 Median 0.60054 0.56257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7230500 4464500 2766000 7230500 4464500 2766000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18916 4059 19717 98551 100131 100131 1 LAPPLVTLLSAEPELQYVALR MLSKDLDYYGTLLKKLAPPLVTLLSAEPEL TLLSAEPELQYVALRNINLIVQKRPEILKH K L A L R N 3 1 0 0 0 1 2 0 0 0 6 0 0 0 3 1 1 0 1 2 0 0 21 0 2292.3093 Q10567;C9J1E7 Q10567 284 304 AP1B1 AP-1 complex subunit beta-1 yes no 3 0.00024826 31.138 By MS/MS By matching By MS/MS 2 1 2 0.63732 0.64353 7.4506 5 Median 0.63249 0.6211 1.1148 2 0 Median 0.82748 0.73537 NaN 1 0 Median 0.6384 0.66785 5.2457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6749700 3965100 2784600 6070300 3576100 2494200 68771 33802 34969 610640 355250 255390 0 0 0 0 0 0 0 0 0 18917 2752 19718 98552;98553;98554;98555;98556 100132;100133;100134;100135;100136 100133 5 LAPPLVTLLSGEPEVQYVALR LLPKDSDYYNMLLKKLAPPLVTLLSGEPEV TLLSGEPEVQYVALRNINLIVQKRPEILKQ K L A L R N 2 1 0 0 0 1 2 1 0 0 5 0 0 0 3 1 1 0 1 3 0 0 21 0 2264.278 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 246 266 AP2B1 AP-2 complex subunit beta yes no 3 0.00030183 29.444 By MS/MS By MS/MS By MS/MS 3 2 1 0.64135 0.64415 21.28 6 Median 0.67848 0.66142 21.441 3 0 Plateau NaN NaN NaN 0 0 Median 0.62265 0.65411 9.5813 2 0 Median NaN NaN NaN 0 0 Median 0.80394 0.85483 NaN 1 0 Median NaN NaN NaN 0 0 Median 5766700 3269000 2497800 3608500 2024700 1583800 0 0 0 1304800 798310 506520 0 0 0 853370 445940 407430 0 0 0 18918 128 19719 98557;98558;98559;98560;98561;98562 100137;100138;100139;100140;100141;100142;100143;100144 100139 8 LAPSEYR AQDVASSPPESSFQKLAPSEYRYTLLRDRD PPESSFQKLAPSEYRYTLLRDRDEL_____ K L A Y R Y 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 7 0 834.42357 Q9BS26 Q9BS26 390 396 ERP44 Endoplasmic reticulum resident protein 44 yes yes 2 0.02008 60.76 By MS/MS 1 1.1035 0.95727 NaN 1 Median NaN NaN NaN 0 0 Median 1.1035 0.95727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4255700 2278600 1977100 0 0 0 4255700 2278600 1977100 0 0 0 0 0 0 0 0 0 0 0 0 18919 3809 19720 98563 100145 100145 1 LAPVPSPEPQKPAPVSPESVK SPEPPKSVPVCESQKLAPVPSPEPQKPAPV PEPQKPAPVSPESVKATLSNPKPQKQSHFP K L A V K A 2 0 0 0 0 1 2 0 0 0 1 2 0 0 7 3 0 0 0 3 0 0 21 1 2153.1732 Q96JM3 Q96JM3 199 219 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.0029711 34.689 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2465800 2465800 0 0 0 0 0 0 0 2465800 2465800 0 0 0 0 0 0 0 0 0 0 18920 3687 19721 98564 100146 100146 1 LAQAAQSSVATITR DTKVLVQNAAGSQEKLAQAAQSSVATITRL KLAQAAQSSVATITRLADVVKLGAASLGAE K L A T R L 4 1 0 0 0 2 0 0 0 1 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1415.7732 Q9Y490 Q9Y490 2044 2057 TLN1 Talin-1 yes yes 2 1.8496E-32 212.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 2 4 1.2182 1.003 39.509 14 Median 0.96184 0.91595 1.0046 2 0 Median 1.195 1.003 3.6935 4 0 Median 1.301 1.4181 NaN 1 0 Median 1.283 1.1316 NaN 1 0 Median 2.7623 2.8618 2.7606 2 0 Median 1.1682 0.95429 10.377 4 0 Median 307950000 137030000 170920000 102210000 49800000 52407000 127180000 56672000 70507000 31286000 13313000 17973000 8989800 3957000 5032700 18727000 4488800 14238000 19565000 8803600 10761000 18921 4441 19722 98565;98566;98567;98568;98569;98570;98571;98572;98573;98574;98575;98576;98577;98578 100147;100148;100149;100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160;100161;100162;100163;100164;100165;100166;100167 100155 21 LAQAEEQLEQETR ARARHKMTIAALESKLAQAEEQLEQETRER SKLAQAEEQLEQETRERILSGKLVRRAEKR K L A T R E 2 1 0 0 0 3 4 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 13 0 1543.7478 Q7Z406;A1L2Z2 Q7Z406 1840 1852 MYH14 Myosin-14 yes no 2 1.2307E-10 179.57 By MS/MS By MS/MS 1 1 1.1186 1.0011 16.293 2 Median 0.95074 0.89219 NaN 1 0 Median 1.3161 1.1234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29618000 14679000 14939000 22423000 11267000 11156000 7195100 3412400 3782600 0 0 0 0 0 0 0 0 0 0 0 0 18922 3242 19723 98579;98580 100168;100169;100170;100171;100172 100170 5 LAQAHGFQGFLR GWEELGRMWESRQGRLAQAHGFQGFLRDAR QGRLAQAHGFQGFLRDARQAEGVLSSQEYV R L A L R D 2 1 0 0 0 2 0 2 1 0 2 0 0 2 0 0 0 0 0 0 0 0 12 0 1343.7099 O15020 O15020 1168 1179 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.00080952 47.288 By MS/MS By MS/MS 1 1 2.0291 2.0151 48.503 2 Median 3.0204 2.8396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3632 1.4301 NaN 1 0 Median NaN NaN NaN 0 0 Median 13353000 3910500 9442200 9270900 2228300 7042600 0 0 0 0 0 0 0 0 0 4081800 1682200 2399600 0 0 0 18923 1512 19724 98581;98582 100173;100174;100175 100174 3 LAQAHPAGPPTLDPVNDLQLK PPLAAVTTAVQELLRLAQAHPAGPPTLDPV AGPPTLDPVNDLQLKDMSVVEGGLRARKLE R L A L K D 3 0 1 2 0 2 0 1 1 0 4 1 0 0 4 0 1 0 0 1 0 0 21 0 2194.1746 Q15477;H7C5N0 Q15477 971 991 SKIV2L Helicase SKI2W yes no 3 9.8278E-08 61.276 By MS/MS 1 0.7276 0.7887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7276 0.7887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4007100 2349400 1657700 0 0 0 0 0 0 4007100 2349400 1657700 0 0 0 0 0 0 0 0 0 18924 2955 19725 98583 100176 100176 1 LAQALHEMR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ IEYEYKLAQALHEMREQHDAQVRLYKEELE K L A M R E 2 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1067.5546 P20700;E9PBF6;A0A0D9SFE5 P20700 242 250 LMNB1 Lamin-B1 yes no 2 0.00045787 124.98 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 5 1.5373 1.2418 32.474 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97753 0.99711 NaN 1 0 Median 2.2363 1.9088 47.311 2 0 Median 0.94137 0.95583 7.9452 4 0 Median 1.6078 1.3068 19.391 5 0 Median 131100000 61109000 69990000 0 0 0 0 0 0 9818800 4576700 5242000 8098000 2683800 5414200 80564000 41331000 39233000 32618000 12517000 20101000 18925 2084 19726 98584;98585;98586;98587;98588;98589;98590;98591;98592;98593;98594;98595;98596 100177;100178;100179;100180;100181;100182;100183;100184;100185;100186;100187;100188;100189;100190;100191;100192;100193;100194;100195;100196 100177 20 LAQALHEMREQHDAQVR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ QALHEMREQHDAQVRLYKEELEQTYHAKLE K L A V R L 3 2 0 1 0 3 2 0 2 0 2 0 1 0 0 0 0 0 0 1 0 0 17 1 2031.0068 P20700;E9PBF6;A0A0D9SFE5 P20700 242 258 LMNB1 Lamin-B1 yes no 3;4;5 6.2522E-15 160.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 13 7 1.109 1.18 31.987 25 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.109 1.2375 NaN 1 0 Median 2.3872 2.2268 24.914 4 0 Median 0.86334 0.94382 13.48 13 0 Median 1.5154 1.3397 6.8641 7 0 Median 656140000 315260000 340880000 0 0 0 0 0 0 2757100 1277700 1479300 8702700 2472900 6229800 572570000 284080000 288490000 72114000 27435000 44679000 18926 2084 19727;19728 98597;98598;98599;98600;98601;98602;98603;98604;98605;98606;98607;98608;98609;98610;98611;98612;98613;98614;98615;98616;98617;98618;98619;98620;98621 100197;100198;100199;100200;100201;100202;100203;100204;100205;100206;100207;100208;100209;100210;100211;100212;100213;100214;100215;100216;100217;100218;100219;100220;100221;100222;100223;100224;100225;100226;100227;100228;100229;100230;100231;100232;100233;100234;100235;100236 100207 845 40 LAQANGWGVMVSHR VNQIGSVTESLQACKLAQANGWGVMVSHRS KLAQANGWGVMVSHRSGETEDTFIADLVVG K L A H R S 2 1 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 1 0 2 0 0 14 0 1524.762 P06733;A0A2R8Y6G6 P06733 359 372 ENO1 Alpha-enolase yes no 2;3 2.0122E-23 196.88 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 17 15 7 5 1 1 1.1852 1.0421 29.696 45 Median 1.1607 1.094 10.891 17 1 Median 1.1932 1.003 6.4953 15 0 Median 1.2865 1.2576 9.1162 6 3 Median 1.1852 1.0047 6.6958 5 0 Median 0.22922 0.23829 NaN 1 0 Median 0.41247 0.35792 NaN 1 0 Median 1571700000 711800000 859890000 961700000 434890000 526810000 329160000 146860000 182300000 142740000 65089000 77648000 134650000 62595000 72060000 2937000 2077000 859930 499500 285870 213630 18927 1873 19729;19730 98622;98623;98624;98625;98626;98627;98628;98629;98630;98631;98632;98633;98634;98635;98636;98637;98638;98639;98640;98641;98642;98643;98644;98645;98646;98647;98648;98649;98650;98651;98652;98653;98654;98655;98656;98657;98658;98659;98660;98661;98662;98663;98664;98665;98666;98667 100237;100238;100239;100240;100241;100242;100243;100244;100245;100246;100247;100248;100249;100250;100251;100252;100253;100254;100255;100256;100257;100258;100259;100260;100261;100262;100263;100264;100265;100266;100267;100268;100269;100270;100271;100272;100273;100274;100275;100276;100277;100278;100279;100280;100281;100282;100283;100284 100259 639 48 LAQAWFNTHR AYIMNYIIGKNKNSRLAQAWFNTHRELLES NKNSRLAQAWFNTHRELLESNFTLVGDDGT R L A H R E 2 1 1 0 0 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 10 0 1242.6258 Q96A33 Q96A33 163 172 CCDC47 Coiled-coil domain-containing protein 47 yes yes 3 0.00011169 91.584 By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 1.329 1.22 17.041 5 Median 0.91313 0.86891 NaN 1 0 Median 1.5144 1.3013 6.0084 2 0 Median 1.1782 1.22 NaN 1 0 Median 1.329 1.1423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22812000 11569000 11242000 11035000 6794200 4241000 5232100 1974800 3257200 4372100 1801500 2570600 2172200 998680 1173500 0 0 0 0 0 0 18928 3592 19731 98668;98669;98670;98671;98672;98673 100285;100286;100287;100288;100289;100290 100289 6 LAQAYYESTR NKKIDFTEFLLMVFKLAQAYYESTRKENLP LMVFKLAQAYYESTRKENLPISGHKHRKHS K L A T R K 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 10 0 1200.5775 CON__P20930;P20930 CON__P20930 81 90 FLG Filaggrin yes no 2 0.0016465 81.594 By MS/MS 1 0.1316 0.10252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1316 0.10252 NaN 1 1 Median 512650 469130 43526 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 512650 469130 43526 + 18929 762 19732 98674 100291 100291 1 LAQDFLDSQNLSAYNTR ITTYFSGNCTMEDAKLAQDFLDSQNLSAYN QDFLDSQNLSAYNTRLFKEVDGEGKPYYEV K L A T R L 2 1 2 2 0 2 0 0 0 0 3 0 0 1 0 2 1 0 1 0 0 0 17 0 1954.9385 G3V1D3;G3V180;Q9NY33;E9PQ14;E9PPK9;E9PKK8;E9PNX5 G3V1D3 202 218 DPP3 Dipeptidyl peptidase 3 yes no 2;3 7.8512E-13 155.42 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.2301 1.0508 10.462 5 Median 1.1047 1.0503 0.069921 2 1 Median 1.2855 1.1201 NaN 1 0 Median 1.2547 1.3239 NaN 1 0 Median 1.2301 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49227000 22805000 26421000 43397000 20071000 23326000 1901800 818860 1082900 3733900 1824400 1909400 193650 90689 102960 0 0 0 0 0 0 18930 1102 19733 98675;98676;98677;98678;98679 100292;100293;100294;100295;100296 100293 5 LAQDLVVEASDSK KSLQALKHQVDLAKRLAQDLVVEASDSKGT KRLAQDLVVEASDSKGTSDVLLQVETIAQE R L A S K G 2 0 0 2 0 1 1 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 13 0 1373.7038 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 3038 3050 DST Dystonin yes no 2 1.5414E-06 112.13 By MS/MS 1 3.8411 3.4208 NaN 1 Median NaN NaN NaN 0 0 Median 3.8411 3.4208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19624000 2573900 17050000 0 0 0 19624000 2573900 17050000 0 0 0 0 0 0 0 0 0 0 0 0 18931 934 19734 98680 100297 100297 1 LAQDPYR QDSAMLGSKSPDPYRLAQDPYRLAQDPYRL SKSPDPYRLAQDPYRLAQDPYRLGHDPYRL R L A Y R L 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 861.43447 P18583 P18583 916 922 SON Protein SON yes no 2 0.0083653 86.086 By matching By MS/MS By MS/MS 1 1 1 0.91118 0.94803 13.141 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86108 0.95618 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91118 0.94803 NaN 1 0 Median 0.91348 0.75838 NaN 1 0 Median 10248000 5131100 5116500 0 0 0 0 0 0 290450 186330 104120 0 0 0 6170800 2999000 3171800 3786400 1945800 1840600 18932 2058 19735 98681;98682;98683 100298;100299;100300;100301 100300 4 LAQEEESEAK PRVMAGTLKLEDKQRLAQEEESEAKRLAIM EDKQRLAQEEESEAKRLAIMMMKKREKYLY R L A A K R 2 0 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1132.5248 B5MCF9;O00541;B3KXD6;H7C267 B5MCF9 507 516 PES1 Pescadillo homolog yes no 2 0.00040727 76.827 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.4289 1.2186 17.12 7 Median 1.6823 1.632 NaN 1 0 Median 1.6741 1.447 NaN 1 0 Median 1.0788 1.1405 NaN 1 0 Median 1.931 1.6571 NaN 1 0 Median 1.1475 1.1401 0.15488 2 0 Median 1.4289 1.2186 NaN 1 0 Median 12080000 5211300 6868500 704410 266260 438150 1767300 578490 1188800 4882800 2379300 2503500 410440 152750 257690 4213500 1804500 2408900 101350 29943 71406 18933 618 19736 98684;98685;98686;98687;98688;98689;98690 100302;100303;100304;100305;100306;100307;100308 100307 7 LAQEEESEAKR PRVMAGTLKLEDKQRLAQEEESEAKRLAIM DKQRLAQEEESEAKRLAIMMMKKREKYLYQ R L A K R L 2 1 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1288.6259 B5MCF9;O00541;B3KXD6;H7C267 B5MCF9 507 517 PES1 Pescadillo homolog yes no 2;3 4.0757E-05 109.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 8 4 1.0863 1.0686 18.771 21 Median 1.2509 1.27 0.46168 2 0 Median 1.1468 1.056 1.0743 2 0 Median 0.90628 0.96322 29.919 3 0 Plateau 1.2301 1.1279 7.6349 2 1 Median 1.0268 1.105 13.106 8 2 Median 1.1696 1.0783 12.499 4 0 Median 51027000 25110000 25917000 2720500 1191800 1528600 3409200 1472500 1936700 20513000 10785000 9727400 620920 280010 340900 22316000 10757000 11560000 1447600 623540 824050 18934 618 19737 98691;98692;98693;98694;98695;98696;98697;98698;98699;98700;98701;98702;98703;98704;98705;98706;98707;98708;98709;98710;98711 100309;100310;100311;100312;100313;100314;100315;100316;100317;100318;100319;100320;100321;100322;100323;100324;100325;100326;100327;100328;100329;100330 100313 22 LAQEGIYTLYPFINSR WCRNNSGEEFDCAFRLAQEGIYTLYPFINS AQEGIYTLYPFINSRIITVSMEDVKILLTQ R L A S R I 1 1 1 0 0 1 1 1 0 2 2 0 0 1 1 1 1 0 2 0 0 0 16 0 1883.9781 Q08J23 Q08J23 603 618 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 6.6184E-05 77.305 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1.0107 0.93242 10.076 6 Median 0.98356 0.94085 4.37 2 0 Median 1.103 0.95308 NaN 1 0 Median 1.018 1.0923 NaN 1 0 Median 1.0181 0.8479 7.1498 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22215000 10738000 11477000 13504000 6637600 6866400 7107500 3306600 3800900 1414100 694080 720040 189560 100140 89416 0 0 0 0 0 0 18935 2745 19738 98712;98713;98714;98715;98716;98717 100331;100332;100333;100334;100335;100336;100337 100337 7 LAQENGWGVMVSHR VNQIGSVTEAIQACKLAQENGWGVMVSHRS KLAQENGWGVMVSHRSGETEDTFIADLVVG K L A H R S 1 1 1 0 0 1 1 2 1 0 1 0 1 0 0 1 0 1 0 2 0 0 14 0 1582.7674 P09104;F5H0C8 P09104 359 372 ENO2 Gamma-enolase;Enolase yes no 3 0.03152 18.102 By MS/MS 1 1.2456 1.0478 NaN 1 Median NaN NaN NaN 0 0 Median 1.2456 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12116000 5330400 6786100 0 0 0 12116000 5330400 6786100 0 0 0 0 0 0 0 0 0 0 0 0 18936 1911 19739 98718 100338 100338 1 LAQEQGGGDNSLLVR ARQLGSRYFALVERRLAQEQGGGDNSLLVR LAQEQGGGDNSLLVRALDRFHRRLRAPGAL R L A V R A 1 1 1 1 0 2 1 3 0 0 3 0 0 0 0 1 0 0 0 1 0 0 15 0 1555.7954 Q9UID3 Q9UID3 356 370 VPS51 Vacuolar protein sorting-associated protein 51 homolog yes yes 2 0.00038099 62.408 By MS/MS By MS/MS 1 1 0.98963 0.90447 12.32 2 Median 1.0243 0.98679 NaN 1 0 Median 0.95613 0.82901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6795400 3395100 3400300 4120400 2065300 2055100 2675000 1329800 1345200 0 0 0 0 0 0 0 0 0 0 0 0 18937 4289 19740 98719;98720 100339;100340 100339 2 LAQFDYGR KYVLKPATEGKQRLKLAQFDYGRKCSEVAR EGKQRLKLAQFDYGRKCSEVARLTEGMSGR K L A G R K 1 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 968.47158 H0Y2W2;Q5SV16;Q5T9A4;Q9NVI7 H0Y2W2 492 499 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.0023555 114.78 By matching By MS/MS By MS/MS By matching By matching 1 1 3 1 1 1.1609 1.1118 15.201 7 Median 1.0694 1.0154 NaN 1 0 Median 1.4725 1.2735 NaN 1 0 Median 0.84097 0.9359 18.643 3 0 Median 1.3796 1.1562 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2909 1.1118 NaN 1 0 Median 44263000 20291000 23972000 12234000 5719500 6514200 12542000 4880600 7661300 18169000 9099200 9070100 800350 316650 483700 0 0 0 518150 275330 242820 18938 1140;4133;3098 19741 98721;98722;98723;98724;98725;98726;98727 100341;100342;100343 100342 3 LAQFDYGRK KYVLKPATEGKQRLKLAQFDYGRKCSEVAR GKQRLKLAQFDYGRKCSEVARLTEGMSGRE K L A R K C 1 1 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 9 1 1096.5665 H0Y2W2;Q5SV16;Q5T9A4;Q9NVI7 H0Y2W2 492 500 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.024589 50.607 By MS/MS 1 1.2892 1.3084 NaN 1 Median 1.2892 1.3084 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1564100 699080 864980 1564100 699080 864980 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18939 1140;4133;3098 19742 98728 100344 100344 1 LAQFEPSQR PPEDPSVPVALNIGKLAQFEPSQRQNQVGV ALNIGKLAQFEPSQRQNQVGVVPWSPPQSN K L A Q R Q 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1074.5458 Q08211 Q08211 315 323 DHX9 ATP-dependent RNA helicase A yes yes 2 1.8596E-10 170.66 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 5 4 1.1891 1.0631 19.875 16 Median 1.6313 1.6476 NaN 1 0 Median 1.2265 1.037 2.4054 2 0 Median 0.96467 1.0601 40.612 3 0 Median 1.3219 1.1217 NaN 1 0 Median 0.99644 1.0093 9.1483 5 0 Median 1.3112 1.07 4.3974 4 1 Median 278240000 129010000 149230000 3292800 1345500 1947300 49123000 20973000 28150000 49137000 24507000 24629000 6496800 2821500 3675300 129640000 62793000 66844000 40552000 16568000 23984000 18940 2736 19743 98729;98730;98731;98732;98733;98734;98735;98736;98737;98738;98739;98740;98741;98742;98743;98744 100345;100346;100347;100348;100349;100350;100351;100352;100353;100354;100355;100356;100357;100358;100359;100360;100361;100362;100363;100364;100365;100366;100367;100368;100369;100370 100351 26 LAQFIGNR PELVKIINDNATYCRLAQFIGNRRELNEDK DNATYCRLAQFIGNRRELNEDKLEKLEELT R L A N R R 1 1 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 917.5083 O00567;A0A494C128;Q5JXT2 O00567 213 220 NOP56 Nucleolar protein 56 yes no 2 0.0026701 126.24 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 3 1.1862 1.0214 16.303 7 Median NaN NaN NaN 0 0 Median 1.4578 1.2615 NaN 1 1 Median 1.1862 1.1967 NaN 1 0 Median 1.5364 1.2829 NaN 1 0 Median 0.9783 0.9799 NaN 1 0 Median 1.0678 0.91972 9.3865 3 0 Median 58646000 26134000 32512000 0 0 0 8881000 3218500 5662500 29698000 13991000 15707000 1942200 699340 1242800 8582800 3956900 4625900 9542900 4268500 5274300 18941 1472 19744 98745;98746;98747;98748;98749;98750;98751 100371;100372;100373 100371 3 LAQFIGNRR PELVKIINDNATYCRLAQFIGNRRELNEDK NATYCRLAQFIGNRRELNEDKLEKLEELTM R L A R R E 1 2 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6094 O00567;A0A494C128;Q5JXT2 O00567 213 221 NOP56 Nucleolar protein 56 yes no 2 0.00018162 145.04 By MS/MS By MS/MS 2 2 1.2252 1.1902 9.568 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.0897 6.8375 2 0 Median 1.4137 1.2638 2.8521 2 0 Median 41100000 20245000 20855000 0 0 0 0 0 0 0 0 0 0 0 0 28822000 15018000 13804000 12278000 5227200 7050500 18942 1472 19745 98752;98753;98754;98755 100374;100375;100376;100377 100375 4 LAQFVAR PLPPDDQELRNVIDKLAQFVARNGPEFEKM ELRNVIDKLAQFVARNGPEFEKMTMEKQKD K L A A R N 2 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 803.46537 J3QK89;Q8IWX8 J3QK89 19 25 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.012615 77.944 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.1505 1.0921 17.292 6 Median NaN NaN NaN 0 0 Median 1.5572 1.3324 NaN 1 0 Median 0.90857 0.97937 23.937 2 0 Median 1.2 1.0281 NaN 1 0 Median 1.1394 1.203 NaN 1 0 Median 1.1618 0.95416 NaN 1 0 Median 10247000 4801200 5445900 0 0 0 2225300 1005000 1220200 3046400 1472900 1573600 654060 315330 338730 3626400 1725900 1900500 694900 282030 412880 18943 1338 19746 98756;98757;98758;98759;98760;98761 100378;100379;100380;100381;100382;100383;100384 100378 7 LAQFVEHWK LSDDNTIGKEEIQQRLAQFVEHWKELKQLA EEIQQRLAQFVEHWKELKQLAAARGQRLEE R L A W K E 1 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 1 0 1 0 0 9 0 1156.6029 A0A0D9SF54;Q13813 Q13813 1845 1853 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00053478 116.73 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 0.92096 0.93047 27.178 9 Median 0.89528 0.89714 NaN 1 0 Median 1.2979 1.1537 2.7044 2 0 Median 0.84696 0.93047 NaN 1 0 Median 1.0429 0.97535 10.636 2 1 Median 0.92096 0.9647 NaN 1 0 Median 0.70878 0.59473 30.652 2 2 Median 127390000 61433000 65958000 12409000 4700400 7708100 33173000 14303000 18870000 44272000 23552000 20720000 10646000 5308600 5337200 19832000 9608200 10224000 7060100 3960800 3099300 18944 264;2838 19747 98762;98763;98764;98765;98766;98767;98768;98769;98770 100385;100386;100387;100388;100389;100390;100391;100392;100393 100386 9 LAQGEYIAPEK NGTLKIIDRKKHIFKLAQGEYIAPEKIENI HIFKLAQGEYIAPEKIENIYMRSEPVAQVF K L A E K I 2 0 0 0 0 1 2 1 0 1 1 1 0 0 1 0 0 0 1 0 0 0 11 0 1217.6292 E7EPM6;P33121;B7Z3Z9;H0Y9U7;Q9ULC5 E7EPM6 528 538 ACSL1;ACSL5 Long-chain-fatty-acid--CoA ligase 1;Long-chain-fatty-acid--CoA ligase 5 yes no 2 0.00098262 61.56 By MS/MS 1 1.1559 0.98351 NaN 1 Median NaN NaN NaN 0 0 Median 1.1559 0.98351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4572600 2151700 2421000 0 0 0 4572600 2151700 2421000 0 0 0 0 0 0 0 0 0 0 0 0 18945 871 19748 98771 100394 100394 1 LAQGHTTVDELAR RLQEAGILSAEELQRLAQGHTTVDELARRE QRLAQGHTTVDELARREDVRHYLQGRSSIA R L A A R R 2 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1409.7263 Q15149;H0YDN1 Q15149 2809 2821 PLEC Plectin yes no 2;3 1.658E-07 146.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 5 1.3006 1.1364 18.739 18 Median 1.2208 1.1856 13.169 3 0 Plateau 1.3417 1.071 39.622 3 0 Median 1.1543 1.217 4.0538 2 0 Median 1.362 1.1872 17.59 3 0 Median 1.1911 1.2254 18.991 2 0 Median 1.3412 1.0919 13.791 5 1 Median 256270000 112130000 144140000 38726000 16549000 22177000 87523000 38371000 49152000 25058000 12553000 12505000 9624900 3880900 5744000 24874000 11086000 13789000 70465000 29693000 40772000 18946 2933 19749 98772;98773;98774;98775;98776;98777;98778;98779;98780;98781;98782;98783;98784;98785;98786;98787;98788;98789 100395;100396;100397;100398;100399;100400;100401;100402;100403;100404;100405;100406;100407;100408;100409;100410;100411;100412;100413;100414;100415;100416;100417;100418;100419;100420;100421 100399 27 LAQGLTHLGK AQYHAKDPNNLFMVRLAQGLTHLGKGTLTL LFMVRLAQGLTHLGKGTLTLCPYHSDRQLM R L A G K G 1 0 0 0 0 1 0 2 1 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1036.6029 Q13200 Q13200 764 773 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.032874 33.263 By MS/MS By matching 2 2 1.0653 0.93144 15.145 4 Median 0.99626 0.95214 23.866 2 0 Median 1.0653 0.93144 10.663 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24843000 11678000 13165000 9512700 4410500 5102200 15330000 7267100 8062800 0 0 0 0 0 0 0 0 0 0 0 0 18947 2796 19750 98790;98791;98792;98793 100422;100423 100422 2 LAQHITYVHQHSR LWLIQDRPDRDNDLRLAQHITYVHQHSRQP LRLAQHITYVHQHSRQPPSQFEPLDMKLMR R L A S R Q 1 1 0 0 0 2 0 0 3 1 1 0 0 0 0 1 1 0 1 1 0 0 13 0 1588.8223 P33993 P33993 533 545 MCM7 DNA replication licensing factor MCM7 yes yes 2;3;4 0.00023068 70.977 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 6 4 1 1 2 1.152 0.99718 17.635 13 Median 1.2091 1.1916 33.437 2 0 Median 1.1991 1.0371 6.232 4 0 Median 0.81407 0.83343 12.767 3 0 Median 1.257 1.0658 NaN 1 0 Median 0.9089 0.87805 NaN 1 0 Median 1.3544 1.1722 9.5132 2 0 Median 34489000 10707000 23783000 5896500 1814700 4081900 18199000 5351800 12847000 9195400 3054600 6140800 418160 199290 218870 440840 154060 286780 339760 132250 207520 18948 2225 19751 98794;98795;98796;98797;98798;98799;98800;98801;98802;98803;98804;98805;98806;98807;98808;98809;98810 100424;100425;100426;100427;100428;100429;100430;100431;100432;100433;100434;100435;100436;100437;100438;100439;100440 100438 17 LAQHTLQALQSELDSLR ERFRARNQELEAENRLAQHTLQALQSELDS QHTLQALQSELDSLRADNIKLFEKIKFLQS R L A L R A 2 1 0 1 0 3 1 0 1 0 5 0 0 0 0 2 1 0 0 0 0 0 17 0 1922.0221 Q13948 Q13948 525 541 CUX1 Protein CASP yes yes 3 0.057248 9.4055 By MS/MS 1 1.5919 1.3755 NaN 1 Median NaN NaN NaN 0 0 Median 1.5919 1.3755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7089600 2503700 4585900 0 0 0 7089600 2503700 4585900 0 0 0 0 0 0 0 0 0 0 0 0 18949 2847 19752 98811 100441 100441 1 LAQILAAR EIENLTGARHMESEKLAQILAARQLEIKQI RHMESEKLAQILAARQLEIKQIPSDGHCMY K L A A R Q 3 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 854.53379 A0A087X0W9;Q8N6M0 A0A087X0W9 168 175 OTUD6B OTU domain-containing protein 6B yes no 2 0.0079765 68.915 By MS/MS By MS/MS By matching 1 1 1 1.3668 1.1566 4.5575 3 Median 1.1392 1.0761 NaN 1 1 Median 1.3668 1.1566 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3981 1.1709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7793000 3147100 4645900 5245800 2190300 3055500 1479800 538550 941280 0 0 0 1067400 418190 649210 0 0 0 0 0 0 18950 115 19753 98812;98813;98814 100442;100443 100443 2 LAQLEEAK GPFVADFADKLNEQKLAQLEEAKQASIQHI DKLNEQKLAQLEEAKQASIQHIQNAIDTEK K L A A K Q 2 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 Q5QNZ2;P24539 Q5QNZ2 71 78 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2 0.0034121 97.798 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1.0749 1.0051 14.945 7 Median 1.0441 0.97298 NaN 1 0 Median 1.5331 1.2915 NaN 1 0 Median 1.0292 1.0421 5.1144 2 0 Median 1.0805 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0266 0.84739 7.5364 2 0 Median 20110000 9555300 10555000 8944100 4302700 4641400 3765300 1713000 2052300 4419400 2127900 2291500 1820600 908810 911790 0 0 0 1160600 502830 657740 18951 2124 19754 98815;98816;98817;98818;98819;98820;98821 100444;100445;100446;100447;100448;100449 100446 6 LAQLITQAK YTPMFGPEARTLVLRLAQLITQAKHTAKSI RTLVLRLAQLITQAKHTAKSISDQCAESPA R L A A K H 2 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 984.59678 Q9NXE4;H7C1Q6;H7C0W5;H7C235 Q9NXE4 596 604 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0005315 117.04 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.3678 1.3424 25.873 6 Median NaN NaN NaN 0 0 Median 1.3387 1.2027 NaN 1 0 Median 1.134 1.2032 35.122 2 0 Median 2.0515 1.7791 NaN 1 0 Median 0.9595 0.98834 NaN 1 0 Median 1.8126 1.4984 NaN 1 0 Median 21081000 9394300 11687000 0 0 0 956080 411590 544500 14187000 6635700 7551500 2583400 923130 1660300 1916900 959910 956990 1437600 463950 973660 18952 4162 19755 98822;98823;98824;98825;98826;98827 100450;100451;100452;100453;100454;100455 100453 6 LAQLQEGQDLYSR RAHQILVLQEGKLQKLAQLQEGQDLYSRLV QKLAQLQEGQDLYSRLVQQRLMD_______ K L A S R L 1 1 0 1 0 3 1 1 0 0 3 0 0 0 0 1 0 0 1 0 0 0 13 0 1519.7631 X5CMH5 X5CMH5 683 695 TAP2 yes yes 2 0.0012901 56.225 By MS/MS 1 1.057 1.0361 NaN 1 Median 1.057 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11190000 6404100 4785700 11190000 6404100 4785700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18953 4564 19756 98828 100456 100456 1 LAQMFSDMVLK PGAAKSGVGTALLLKLAQMFSDMVLKDGFQ LLLKLAQMFSDMVLKDGFQPSRSIIFASWS K L A L K D 1 0 0 1 0 1 0 0 0 0 2 1 2 1 0 1 0 0 0 1 0 0 11 0 1281.6461 P02786;G3V0E5 P02786 429 439 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0076996 41.876 By MS/MS 1 1.1743 1.0647 NaN 1 Median 1.1743 1.0647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11923000 4969200 6954000 11923000 4969200 6954000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18954 1836 19757 98829 100457;100458 100457 2 LAQMISDHNDADFEEK TQHKQRPQATAEQIRLAQMISDHNDADFEE AQMISDHNDADFEEKVKQLIDITGKNQDEC R L A E K V 2 0 1 3 0 1 2 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 16 0 1861.8152 F8W726;Q14157;Q5VU77;Q5VU81;Q5VU80;Q5VU79;Q5VU78 F8W726 38 53 UBAP2L Ubiquitin-associated protein 2-like yes no 3 3.686E-05 63.631 By matching By matching By MS/MS By MS/MS 1 1 3 3 1.1333 1.0611 17.597 8 Median 1.1188 1.0882 NaN 1 0 Median 0.96811 0.83419 NaN 1 0 Median 1.1481 1.2449 22.45 3 0 Median 1.1997 1.0346 13.681 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24568000 10378000 14189000 6387500 2225500 4162000 858760 377510 481250 9760200 4584700 5175600 7561200 3190700 4370600 0 0 0 0 0 0 18955 1083 19758 98830;98831;98832;98833;98834;98835;98836;98837 100459;100460;100461;100462 100460 4 LAQMSICSSLAR VEKTCATDLQTKADRLAQMSICSSLARKFP ADRLAQMSICSSLARKFPKLTIIGEEDLPS R L A A R K 2 1 0 0 1 1 0 0 0 1 2 0 1 0 0 3 0 0 0 0 0 0 12 0 1335.6639 O95861;A6NF51;F8VZG4;F8W1J0;F8VVW8 O95861 53 64 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 2 0.011873 36.424 By MS/MS 1 1.1754 0.98182 NaN 1 Median NaN NaN NaN 0 0 Median 1.1754 0.98182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3776100 1661600 2114500 0 0 0 3776100 1661600 2114500 0 0 0 0 0 0 0 0 0 0 0 0 18956 1799 19759 98838 100463 100463 1 LAQNPLFWK PANVVLKWYENFQRRLAQNPLFWKT_____ ENFQRRLAQNPLFWKT______________ R L A W K T 1 0 1 0 0 1 0 0 0 0 2 1 0 1 1 0 0 1 0 0 0 0 9 0 1115.6128 Q53FT3;A0A087WYW7 Q53FT3 188 196 C11orf73 Protein Hikeshi yes no 2 0.018661 40.573 By MS/MS By matching By matching 2 1 1 0.92493 0.83058 12.337 4 Median 0.77983 0.73149 8.4828 2 0 Median 1.0265 0.88818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1034 0.89176 NaN 1 0 Median 22277000 10374000 11903000 20377000 9485600 10891000 1782700 846740 935950 0 0 0 0 0 0 0 0 0 116930 41639 75289 18957 3028 19760 98839;98840;98841;98842 100464;100465 100464 2 LAQPYVGVFLK VKNKKLVELLRRKVRLAQPYVGVFLKRDDS RKVRLAQPYVGVFLKRDDSNESDVVESLDE R L A L K R 1 0 0 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 1 2 0 0 11 0 1233.7121 K7EKE6;P36776;K7EJE8;K7EQF8 K7EKE6 45 55 LONP1 Lon protease homolog, mitochondrial yes no 2 0.019242 35.357 By matching By MS/MS By matching 3 1 1 1.1642 1.0403 23.923 5 Median NaN NaN NaN 0 0 Median 1.1642 1.0063 23.21 3 0 Median 0.94681 1.0403 NaN 1 0 Median 1.6716 1.4012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21917000 10278000 11639000 0 0 0 14289000 6781700 7506800 6510900 3117500 3393400 1117300 378840 738490 0 0 0 0 0 0 18958 1370 19761 98843;98844;98845;98846;98847 100466 100466 1 LAQQDVEILLNLR QLPATAALNEVGIYKLAQQDVEILLNLRTN YKLAQQDVEILLNLRTNWPNTGK_______ K L A L R T 1 1 1 1 0 2 1 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 13 0 1523.8671 Q6NUQ1 Q6NUQ1 772 784 RINT1 RAD50-interacting protein 1 yes yes 2 0.00078326 65.347 By MS/MS 1 1.1669 1.0456 NaN 1 Median NaN NaN NaN 0 0 Median 1.1669 1.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1053400 533450 519990 0 0 0 1053400 533450 519990 0 0 0 0 0 0 0 0 0 0 0 0 18959 3144 19762 98848 100467;100468 100467 2 LAQQEKQEQVKIESLAK SSSIRERPPEEVAARLAQQEKQEQVKIESL QQEKQEQVKIESLAKSLEDALRQTASVTLQ R L A A K S 2 0 0 0 0 4 3 0 0 1 2 3 0 0 0 1 0 0 0 1 0 0 17 2 1969.0844 Q16891;B9A067;C9J406;A0A087WYS0 Q16891 206 222 IMMT MICOS complex subunit MIC60 yes no 3;4 0.0013169 32.387 By MS/MS 2 1.0495 1.0254 3.5475 2 Median 1.0495 1.0254 3.5475 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13247000 6088500 7158500 13247000 6088500 7158500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18960 3001 19763 98849;98850 100469;100470;100471 100469 3 LAQQELQK RVASIETGLAAAAAKLAQQELQKAQKKKYI LAAAAAKLAQQELQKAQKKKYIKKKPLLKE K L A Q K A 1 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 956.5291 Q9UPP1;H0Y3N9 Q9UPP1 916 923 PHF8 Histone lysine demethylase PHF8 yes no 2 0.043245 36.185 By MS/MS 1 1.9916 1.9017 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9916 1.9017 NaN 1 0 Median NaN NaN NaN 0 0 Median 2972800 933690 2039100 0 0 0 0 0 0 0 0 0 0 0 0 2972800 933690 2039100 0 0 0 18961 1143 19764 98851 100472 100472 1 LAQQGSDLIVPAGGQR PLPSVMSPSRVAASRLAQQGSDLIVPAGGQ AQQGSDLIVPAGGQRTQTKSGPVILADEIK R L A Q R T 2 1 0 1 0 3 0 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 16 0 1608.8584 P53367 P53367 88 103 ARFIP1 Arfaptin-1 yes yes 2 9.0517E-10 102.4 By MS/MS 1 0.85286 0.83763 NaN 1 Median 0.85286 0.83763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4980800 2668500 2312300 4980800 2668500 2312300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18962 2465 19765 98852 100473;100474 100473 2 LAQQISDEASR PNPSSECMLRNVSVRLAQQISDEASRYMPD VSVRLAQQISDEASRYMPDICVIRAIQKII R L A S R Y 2 1 0 1 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1216.6048 Q93008 Q93008 1221 1231 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.00012086 136.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.288 1.117 13.186 7 Median 1.1106 1.0843 25.855 2 0 Median 1.2575 1.04 14.925 2 0 Median 0.89045 0.98824 NaN 1 0 Median 1.3089 1.1489 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3324 1.117 NaN 1 0 Median 35804000 16485000 19319000 9237600 4498200 4739400 23132000 10314000 12817000 1946600 1000500 946090 584960 261400 323560 0 0 0 903210 410150 493060 18963 3573 19766 98853;98854;98855;98856;98857;98858;98859 100475;100476;100477;100478;100479;100480;100481;100482;100483;100484;100485;100486 100483 12 LAQQMENR SMQQQQQLASARNRRLAQQMENRPSVQAAL ASARNRRLAQQMENRPSVQAALKLKQSLKQ R L A N R P 1 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 988.47601 X6R700;Q9Y3Y2;A0A087X1B7;Q5T7Y7 X6R700 30 37 CHTOP Chromatin target of PRMT1 protein yes no 2 0.039331 37.021 By MS/MS By matching 1 1 1.1666 0.98473 0.6392 2 Median NaN NaN NaN 0 0 Median 1.1673 0.98029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1658 0.98919 NaN 1 0 Median 7028100 3073700 3954400 0 0 0 6931300 3036500 3894900 0 0 0 0 0 0 0 0 0 96821 37269 59552 18964 4435 19767 98860;98861 100487 100487 1 LAQQMENRPSVQAALK SMQQQQQLASARNRRLAQQMENRPSVQAAL AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R L A L K L 3 1 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 16 1 1782.9411 X6R700;Q9Y3Y2;A0A087X1B7;Q5T7Y7 X6R700 30 45 CHTOP Chromatin target of PRMT1 protein yes no 2;3 5.8179E-10 138.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 3 7 8 1.0435 1.0078 16.711 26 Median 1.0816 1.0779 5.7781 2 0 Median 1.4592 1.3068 NaN 1 0 Median 0.8325 0.90376 14.106 5 0 Median 1.1467 1.0151 16.652 3 0 Median 0.75577 0.847 14.792 7 0 Median 1.2266 1.0324 12.203 8 0 Median 726830000 357340000 369480000 13116000 7751600 5364600 6351300 2113500 4237900 110020000 53862000 56157000 12386000 5615400 6770900 456230000 230600000 225630000 128720000 57402000 71319000 18965 4435 19768;19769 98862;98863;98864;98865;98866;98867;98868;98869;98870;98871;98872;98873;98874;98875;98876;98877;98878;98879;98880;98881;98882;98883;98884;98885;98886;98887;98888 100488;100489;100490;100491;100492;100493;100494;100495;100496;100497;100498;100499;100500;100501;100502;100503;100504;100505;100506;100507;100508;100509;100510;100511;100512;100513;100514 100502 1986 27 LAQQQAAAAAAAAAAASQQGSAK MPDVVQTRQQAYRDKLAQQQAAAAAAAAAA AAAAAAAASQQGSAKNGENTANGEENGAHT K L A A K N 13 0 0 0 0 5 0 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 23 0 2054.0505 A0A0D9SF63;Q9BZK7;C9JLJ1;C9JCK0;C9JBN1;A0A0D9SF25;A0A1B0GUU2;F8W9D8;C9IYU9 A0A0D9SF63 103 125 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes no 3 6.9919E-20 89.47 By MS/MS 1 1.241 1.1975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.241 1.1975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41458000 17101000 24357000 0 0 0 0 0 0 41458000 17101000 24357000 0 0 0 0 0 0 0 0 0 18966 265 19770 98889 100515 100515 1 LAQQQAALLMQQEER RVGEPVALSEEERLKLAQQQAALLMQQEER LAQQQAALLMQQEERAKQQGDHSLKEHELL K L A E R A 3 1 0 0 0 5 2 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 15 0 1755.8938 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 149 163 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 5.525E-27 202.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 6 6 9 2 1.0348 1.0397 22.592 27 Median 1.1173 1.0767 20.066 2 0 Median 0.96089 0.83333 21.863 2 0 Median 1.0074 1.0978 27.826 6 0 Median 1.2343 1.0466 19.224 6 0 Median 1.0433 1.04 22.859 9 0 Median 1.0677 0.87251 18.213 2 0 Median 381600000 185540000 196060000 22324000 11234000 11090000 5627200 2403700 3223500 147460000 71067000 76395000 19625000 8908800 10717000 184060000 90734000 93324000 2502600 1196800 1305800 18967 2817 19771;19772 98890;98891;98892;98893;98894;98895;98896;98897;98898;98899;98900;98901;98902;98903;98904;98905;98906;98907;98908;98909;98910;98911;98912;98913;98914;98915;98916 100516;100517;100518;100519;100520;100521;100522;100523;100524;100525;100526;100527;100528;100529;100530;100531;100532;100533;100534;100535;100536;100537;100538;100539;100540;100541;100542;100543;100544;100545 100528 1511 30 LAQQSQALQELISELDR DEREQLRILGEKEAKLAQQSQALQELISEL QQSQALQELISELDRRCHSSALELLQEVII K L A D R R 2 1 0 1 0 4 2 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 17 0 1941.0167 P19474 P19474 218 234 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes yes 2 4.3824E-06 84.506 By MS/MS 1 1.1809 1.0042 NaN 1 Median NaN NaN NaN 0 0 Median 1.1809 1.0042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4161400 1791900 2369500 0 0 0 4161400 1791900 2369500 0 0 0 0 0 0 0 0 0 0 0 0 18968 2066 19773 98917 100546;100547 100546 2 LAQQYYLVYQEPIPTAQLVQR GMGPDYRVLVHRARKLAQQYYLVYQEPIPT LVYQEPIPTAQLVQRVASVMQEYTQSGGVR K L A Q R V 2 1 0 0 0 5 1 0 0 1 3 0 0 0 2 0 1 0 3 2 0 0 21 0 2520.3377 A0A024RA52;P25787;C9JCK5 A0A024RA52 93 113 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 3.8591E-25 136.51 By MS/MS 1 0.80118 0.75805 NaN 1 Median 0.80118 0.75805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7305700 3887100 3418600 7305700 3887100 3418600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18969 7 19774 98918 100548;100549 100549 2 LAQTLSTQLFQMVHTQR DILRDNKKKYENILKLAQTLSTQLFQMVHT QTLSTQLFQMVHTQRQLGDAFADLSLKSLE K L A Q R Q 1 1 0 0 0 4 0 0 1 0 3 0 1 1 0 1 3 0 0 1 0 0 17 0 2001.0466 P53367 P53367 178 194 ARFIP1 Arfaptin-1 yes yes 3 5.8929E-13 124.25 By MS/MS By MS/MS By matching 1 2 1 1.3456 1.1713 12.256 4 Median 1.4535 1.447 NaN 1 0 Median 1.2995 1.117 1.9215 2 0 Median NaN NaN NaN 0 0 Median 1.3914 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16750000 7155000 9594900 3609300 1608100 2001200 11468000 4808600 6659500 0 0 0 1672600 738400 934160 0 0 0 0 0 0 18970 2465 19775 98919;98920;98921;98922 100550;100551;100552;100553 100553 4 LAQVSPELLLASVR MFVEYRKQLKLLLDRLAQVSPELLLASVRR RLAQVSPELLLASVRRVFSSTLQNWQTTRF R L A V R R 2 1 0 0 0 1 1 0 0 0 4 0 0 0 1 2 0 0 0 2 0 0 14 0 1494.877 O43592 O43592 415 428 XPOT Exportin-T yes yes 2 0.00035014 72.652 By MS/MS By MS/MS 1 5 0.96517 0.88243 24.617 4 Median 0.97919 0.94682 NaN 1 0 Median 0.95135 0.82241 29.23 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19498000 9955500 9542800 4757000 2254700 2502300 14741000 7700800 7040400 0 0 0 0 0 0 0 0 0 0 0 0 18971 1576 19776 98923;98924;98925;98926;98927;98928 100554;100555;100556;100557 100555 4 LAQYEPPQEEK KYEAIVEENKKLKAKLAQYEPPQEEKRAE_ LKAKLAQYEPPQEEKRAE____________ K L A E K R 1 0 0 0 0 2 3 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 11 0 1330.6405 Q99417;A0A087WV05 Q99417 90 100 MYCBP C-Myc-binding protein yes no 2 0.033498 30.254 By MS/MS 1 0.5587 0.5616 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5587 0.5616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1382900 797200 585670 0 0 0 0 0 0 1382900 797200 585670 0 0 0 0 0 0 0 0 0 18972 38 19777 98929 100558 100558 1 LASAAYPDPSK LDPIREKFNTPALKKLASAAYPDPSKQKPM ALKKLASAAYPDPSKQKPMAKGPAKNSEPE K L A S K Q 3 0 0 1 0 0 0 0 0 0 1 1 0 0 2 2 0 0 1 0 0 0 11 0 1118.5608 P54577;A0A0C4DGZ5 P54577 336 346 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00013849 85.355 By MS/MS By MS/MS 1 1 0.90684 0.81657 1.7645 2 Median 0.84028 0.80644 NaN 1 1 Median 0.97866 0.82682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10580000 5759100 4821100 4349100 2536700 1812500 6231100 3222500 3008600 0 0 0 0 0 0 0 0 0 0 0 0 18973 2482 19778 98930;98931 100559;100560;100561 100560 3 LASAEDSAPADKDEDEGEPPAQAPVAK VEEDAVAATLAAAEKLASAEDSAPADKDED DEDEGEPPAQAPVAKKPARPTVPSSQRLPE K L A A K K 7 0 0 4 0 1 4 1 0 0 1 2 0 0 4 2 0 0 0 1 0 0 27 1 2707.2461 H7C1U3;H0Y517 H7C1U3 292 318 CC2D1B yes no 3 0.0049304 24.644 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.61632 0.62675 25.104 6 Median 0.35791 0.37901 NaN 1 0 Median 0.82852 0.77448 NaN 1 0 Median 0.5196 0.59254 19.528 2 1 Median 0.64971 0.62675 0.59468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13076000 7798400 5277600 1431700 842560 589170 2340700 1153500 1187200 4764100 3150200 1613900 4539400 2652100 1887300 0 0 0 0 0 0 18974 1260 19779 98932;98933;98934;98935;98936;98937 100562;100563;100564;100565 100565 4 LASAFTEEQAVLYNQR AAIEAFNKCKTIYEKLASAFTEEQAVLYNQ ASAFTEEQAVLYNQRVEEISPNIRYCAYNI K L A Q R V 3 1 1 0 0 2 2 0 0 0 2 0 0 1 0 1 1 0 1 1 0 0 16 0 1838.9163 Q9UHB9 Q9UHB9 221 236 SRP68 Signal recognition particle subunit SRP68 yes yes 2;3 1.1003E-09 138.71 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 2 1 1 1.162 0.97519 21.378 9 Median 1.0212 0.99077 25.028 2 0 Median 1.0651 0.93477 NaN 1 0 Median 1.1916 1.24 3.8225 2 1 Median 1.4078 1.1831 27.326 2 0 Median 0.84239 0.90019 NaN 1 0 Median 0.90684 0.76404 NaN 1 0 Median 23269000 10353000 12916000 9381000 4343500 5037500 668230 323940 344290 10888000 4716800 6171700 819590 347410 472170 1292500 518610 773940 218940 102860 116080 18975 4274 19780 98938;98939;98940;98941;98942;98943;98944;98945;98946 100566;100567;100568;100569;100570;100571;100572 100566 7 LASAGVDTNVR YSLDFQHGTAGRIHRLASAGVDTNVRIWKV RIHRLASAGVDTNVRIWKVEKGPDGKAIVE R L A V R I 2 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1101.5778 Q13112 Q13112 32 42 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.00015141 115.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.88154 0.73692 23.345 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1402 1.1675 NaN 1 0 Median 0.88154 0.73692 NaN 1 1 Median 0.82676 0.83528 26.848 2 0 Median 0.84444 0.72744 NaN 1 0 Median 15900000 7847100 8052700 0 0 0 0 0 0 7361600 3122500 4239100 1141100 613380 527690 3843900 2134900 1709000 3553300 1976500 1576900 18976 2786 19781 98947;98948;98949;98950;98951 100573;100574;100575;100576;100577;100578;100579 100574 7 LASALAPSIYEHEDIKK ELLKELSRKPDIYERLASALAPSIYEHEDI SALAPSIYEHEDIKKGILLQLFGGTRKDFS R L A K K G 3 0 0 1 0 0 2 0 1 2 2 2 0 0 1 2 0 0 1 0 0 0 17 1 1883.9993 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 412 428 MCM4 DNA replication licensing factor MCM4 yes no 2;3;4 4.2327E-12 125.28 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 2 4 1 0.79779 0.8347 32.418 16 Median 0.67446 0.70028 27.963 5 0 Median 0.98341 0.93739 11.539 4 0 Median 0.65347 0.74419 3.1948 2 0 Median 1.0038 0.96834 50.672 4 0 Median 0.79323 0.88842 NaN 1 0 Median NaN NaN NaN 0 0 Median 338710000 189790000 148920000 174100000 99350000 74751000 47588000 24148000 23440000 97572000 55951000 41621000 11703000 5963200 5739800 7744800 4380600 3364100 0 0 0 18977 441 19782 98952;98953;98954;98955;98956;98957;98958;98959;98960;98961;98962;98963;98964;98965;98966;98967 100580;100581;100582;100583;100584;100585;100586;100587;100588;100589;100590;100591;100592;100593 100580 14 LASAQEVAGSTSAK RSSARLKARSCSAARLASAQEVAGSTSAKT RLASAQEVAGSTSAKTACLTSSSHKATDTR R L A A K T 4 0 0 0 0 1 1 1 0 0 1 1 0 0 0 3 1 0 0 1 0 0 14 0 1318.6729 Q8IYL3 Q8IYL3 26 39 C1orf174 UPF0688 protein C1orf174 yes yes 2 3.0262E-07 114.83 By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1.0971 0.94733 19.149 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2138 1.1646 NaN 1 0 Median 1.0766 0.91002 NaN 1 0 Median 1.0868 1.1111 16.894 2 0 Median 0.98888 0.81804 15.09 2 0 Median 7501100 3358500 4142600 0 0 0 0 0 0 2253900 885940 1367900 1840900 796520 1044400 2190300 1048700 1141700 1215900 627390 588560 18978 3344 19783 98968;98969;98970;98971;98972;98973 100594;100595;100596;100597;100598;100599 100596 6 LASASLLDTDKR EDGEGDFLVVGSIRKLASASLLDTDKRYCG IRKLASASLLDTDKRYCGKTTSRKAWNEDH K L A K R Y 2 1 0 2 0 0 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 12 1 1288.6987 Q9NY61 Q9NY61 59 70 AATF Protein AATF yes yes 3 0.00096107 44.616 By MS/MS 1 1.0983 1.2077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0983 1.2077 NaN 1 0 Median NaN NaN NaN 0 0 Median 4968700 2176800 2791900 0 0 0 0 0 0 0 0 0 0 0 0 4968700 2176800 2791900 0 0 0 18979 4172 19784 98974 100600 100600 1 LASDESLWQTLDLTGK PELLKVSGVCKRWYRLASDESLWQTLDLTG ASDESLWQTLDLTGKNLHPDVTGRLLSQGV R L A G K N 1 0 0 2 0 1 1 1 0 0 4 1 0 0 0 2 2 1 0 0 0 0 16 0 1775.8941 A0A0A0MTL5;Q13309;D6R9R7 A0A0A0MTL5 141 156 SKP2 S-phase kinase-associated protein 2 yes no 2 0.0018637 53.528 By MS/MS 1 0.74763 0.73461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74763 0.73461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5727100 3676500 2050600 0 0 0 0 0 0 5727100 3676500 2050600 0 0 0 0 0 0 0 0 0 18980 195 19785 98975 100601 100601 1 LASDLLEWIR AVNQENEHLMEDYEKLASDLLEWIRRTIPW EDYEKLASDLLEWIRRTIPWLEDRVPQKTI K L A I R R 1 1 0 1 0 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 10 0 1214.6659 O43707;K7EJH8;P12814;H9KV75;G3V2W4 O43707 301 310 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2 0.0057065 50.04 By MS/MS By MS/MS By MS/MS 3 3 1 0.99357 0.89131 16.68 7 Median 1.0876 1.0464 5.4149 3 0 Plateau 1.0285 0.88266 13.958 3 0 Plateau NaN NaN NaN 0 0 Median 0.99357 0.85719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 416490000 204780000 211710000 29117000 13873000 15244000 386910000 190690000 196220000 0 0 0 469380 225660 243720 0 0 0 0 0 0 18981 1585;1983 19786 98976;98977;98978;98979;98980;98981;98982 100602;100603;100604;100605;100606;100607 100605 6 LASDLLEWIRR AVNQENEHLMEDYEKLASDLLEWIRRTIPW DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ K L A R R T 1 2 0 1 0 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 11 1 1370.767 O43707;K7EJH8;P12814;H9KV75;G3V2W4 O43707 301 311 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 3 0.042715 15.89 By MS/MS By matching 1 1 0.74433 0.77034 98.912 2 Median 1.3954 1.5504 NaN 1 0 Median 0.39702 0.38277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1926200 853760 1072400 1533800 618440 915330 392390 235310 157080 0 0 0 0 0 0 0 0 0 0 0 0 18982 1585;1983 19787 98983;98984 100608;100609 100609 2 LASEAKPAAVAAENEEIGSHIK ELGPLANQLTSDYGRLASEAKPAAVAAENE AAVAAENEEIGSHIKHRVQELGHGCAALVT R L A I K H 6 0 1 0 0 0 4 1 1 2 1 2 0 0 1 2 0 0 0 1 0 0 22 1 2234.1543 Q9Y490 Q9Y490 1896 1917 TLN1 Talin-1 yes yes 3;4 9.0188E-27 123.12 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 0.94198 0.92954 42.873 10 Median 0.71979 0.66336 3.4532 2 0 Median 0.92831 0.89155 4.8823 4 0 Median 0.97894 1.1364 7.3466 2 0 Median NaN NaN NaN 0 0 Median 2.0617 2.2032 4.668 2 1 Median NaN NaN NaN 0 0 Median 298360000 153450000 144920000 143680000 79281000 64396000 95744000 45196000 50547000 52213000 26850000 25363000 0 0 0 6731200 2119600 4611600 0 0 0 18983 4441 19788 98985;98986;98987;98988;98989;98990;98991;98992;98993;98994 100610;100611;100612;100613;100614;100615;100616;100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627 100622 18 LASEEPPDDEEALATIR LIASTFVDQCKTVLKLASEEPPDDEEALAT SEEPPDDEEALATIRLLDVLCEMTVNTELL K L A I R L 3 1 0 2 0 0 4 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 17 0 1854.8847 Q9UBB4;B1AHE4 Q9UBB4 289 305 ATXN10 Ataxin-10 yes no 2 2.803E-07 93.011 By matching By matching By MS/MS By matching 1 1 1 2 0.85233 0.74921 17.522 5 Median 0.90304 0.89956 NaN 1 0 Median 0.85569 0.75818 NaN 1 0 Median 0.75199 0.74679 NaN 1 0 Median 0.73536 0.64395 21.41 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10962000 6106200 4855700 1994100 1224000 770150 419780 219930 199850 7552600 4113400 3439100 995510 548890 446620 0 0 0 0 0 0 18984 4232 19789 98995;98996;98997;98998;98999 100628;100629 100629 2 LASEILMQNWDAAMEDLTR VPATDRNALSSLWGKLASEILMQNWDAAME ILMQNWDAAMEDLTRLKETIDNNSVSSPLQ K L A T R L 3 1 1 2 0 1 2 0 0 1 3 0 2 0 0 1 1 1 0 0 0 0 19 0 2206.0398 P60228;E5RGA2;E5RHS5 P60228 173 191 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2;3 2.7277E-08 83.769 By MS/MS By MS/MS 2 2 1.1562 1.0743 7.8545 4 Median NaN NaN NaN 0 0 Median 1.149 1.0038 1.4951 2 0 Median 1.1636 1.1484 1.337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4224200 1840200 2384000 0 0 0 2163700 989110 1174500 2060500 851060 1209500 0 0 0 0 0 0 0 0 0 18985 2524 19790 99000;99001;99002;99003 100630;100631;100632;100633 100632 4 LASEYLTPEEMVTFKK KLRLQAQSLSTVGPRLASEYLTPEEMVTFK ASEYLTPEEMVTFKKTKRRVKKIRKKEKEV R L A K K T 1 0 0 0 0 0 3 0 0 0 2 2 1 1 1 1 2 0 1 1 0 0 16 1 1884.9543 O43290 O43290 386 401 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.0067309 24.793 By matching By MS/MS By MS/MS 1 2 1 0.94278 1.0662 27.121 4 Median 1.2657 1.3377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72683 0.82904 18.408 2 0 Median NaN NaN NaN 0 0 Median 1.075 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median 15662000 7932600 7729400 2356700 792140 1564500 0 0 0 10542000 5930200 4612000 0 0 0 2763100 1210200 1552900 0 0 0 18986 1563 19791 99004;99005;99006;99007 100634;100635;100636 100635 3 LASEYNWGGPESSDKGDPFATLSAR WQEPSSQEPPPDGTRLASEYNWGGPESSDK ESSDKGDPFATLSARPSTQPRPDSWGEDNW R L A A R P 3 1 1 2 0 0 2 3 0 0 2 1 0 1 2 4 1 1 1 0 0 0 25 1 2654.2249 E9PPN3;E9PS17;E9PK59;Q96KG9;H0YDH0 E9PPN3 578 602 SCYL1 N-terminal kinase-like protein yes no 3 0.011493 18.248 By MS/MS By matching 1 1 0.69096 0.69318 18.326 2 Median 0.58529 0.60893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81571 0.78908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530100 3177200 1352900 4199300 3007400 1191900 0 0 0 0 0 0 330790 169780 161010 0 0 0 0 0 0 18987 945 19792 99008;99009 100637 100637 1 LASFFLSR CMTYFPRACGSLKGKLASFFLSRVDALSPQ CGSLKGKLASFFLSRVDALSPQLQQLACEC K L A S R V 1 1 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 0 0 8 0 939.5178 Q8IZL8;C9JFV4;I3L445 Q8IZL8 217 224 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 0.0041451 83.265 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 2 3 1.2596 1.2341 12.747 11 Median 1.2148 1.2199 NaN 1 0 Median 1.2274 1.0632 NaN 1 0 Median 0.95616 1.0294 23.067 2 0 Median 1.534 1.3395 2.5038 2 0 Median 1.1811 1.2308 10.869 2 0 Median 1.4985 1.236 3.412 3 0 Plateau 26054000 12087000 13967000 1249400 550660 698780 1369100 613500 755630 8663200 4210500 4452700 334510 135150 199360 13444000 6170800 7273000 993740 406630 587110 18988 3351 19793 99010;99011;99012;99013;99014;99015;99016;99017;99018;99019;99020 100638;100639;100640;100641;100642;100643 100641 6 LASFSPSPPSPYPTTVGPVESSGLR YSPGVTYSPVSGYNKLASFSPSPPSPYPTT PYPTTVGPVESSGLRSRYRSSPTVYNSPTD K L A L R S 1 1 0 0 0 0 1 2 0 0 2 0 0 1 6 6 2 0 1 2 0 0 25 0 2529.2751 Q96SK2 Q96SK2 192 216 TMEM209 Transmembrane protein 209 yes yes 3 7.3458E-07 51.001 By MS/MS 1 0.37555 0.37996 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37555 0.37996 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8437200 6156100 2281100 0 0 0 0 0 0 8437200 6156100 2281100 0 0 0 0 0 0 0 0 0 18989 3735 19794 99021 100644 100644 1 LASFYER EMPADSGYPAYLGARLASFYERAGRVKCLG YPAYLGARLASFYERAGRVKCLGNPEREGS R L A E R A 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 7 0 884.43922 P38606 P38606 382 388 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.0061063 94.407 By MS/MS By MS/MS By MS/MS 2 1 1 1.3235 1.1599 1.7022 3 Plateau 1.2231 1.1599 NaN 1 0 Median 1.3254 1.1445 NaN 1 0 Median 1.127 1.1839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51135000 22756000 28379000 13488000 5734400 7753100 33008000 14953000 18055000 4640200 2068700 2571500 0 0 0 0 0 0 0 0 0 18990 2276 19795 99022;99023;99024;99025 100645;100646;100647;100648;100649 100646 5 LASGGDPTYAFNIR ARQLASVPSSQLCVKLASGGDPTYAFNIRF KLASGGDPTYAFNIRFTGEEVHGTSGSFRH K L A I R F 2 1 1 1 0 0 0 2 0 1 1 0 0 1 1 1 1 0 1 0 0 0 14 0 1480.731 F8VWT9;J3KPF0;Q9Y4D8;A0A494C150 F8VWT9 3913 3926 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 yes no 2 6.9697E-05 90.108 By MS/MS 1 0.42621 0.44968 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42621 0.44968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11130000 8009100 3120600 0 0 0 0 0 0 11130000 8009100 3120600 0 0 0 0 0 0 0 0 0 18991 1070 19796 99026 100650 100650 1 LASHLNLAMCHLK SSFSNEEAQKAQALRLASHLNLAMCHLKLQ LRLASHLNLAMCHLKLQAFSAAIESCNKAL R L A L K L 2 0 1 0 1 0 0 0 2 0 4 1 1 0 0 1 0 0 0 0 0 0 13 0 1506.7799 Q02790 Q02790 319 331 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3 0.037816 27.943 By MS/MS 1 3.0581 2.8289 NaN 1 Median 3.0581 2.8289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15499000 1700100 13799000 15499000 1700100 13799000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18992 2701 19797 99027 100651 100651 1 LASILTSAAR GLLVLTTPLASLAPRLASILTSAARLVNHT SLAPRLASILTSAARLVNHTLYVHLQPGMS R L A A R L 3 1 0 0 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1001.5869 Q13057;K7EN91;K7ESK6;K7ES73;K7EP09;K7EPT0 Q13057 22 31 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.00061928 94.85 By MS/MS 1 1.7119 1.4814 NaN 1 Median NaN NaN NaN 0 0 Median 1.7119 1.4814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8918500 3345900 5572600 0 0 0 8918500 3345900 5572600 0 0 0 0 0 0 0 0 0 0 0 0 18993 2783 19798 99028 100652;100653 100652 2 LASIVEQVSVLQNQGR AVVTRGDECGLALGRLASIVEQVSVLQNQG ASIVEQVSVLQNQGREMMLVTSGAVAFGKQ R L A G R E 1 1 1 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 0 3 0 0 16 0 1739.953 P54886 P54886 95 110 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 1.412E-10 163.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 5 2 2 3 1.3032 1.1975 28.915 18 Median 1.058 1.0079 1.3 2 0 Median 1.3577 1.1975 9.798 4 0 Median 1.279 1.3432 15.604 5 0 Median 1.139 0.9937 8.6123 2 0 Median 1.654 1.7541 5.086 2 0 Median 1.2579 1.1075 45.174 3 0 Median 156110000 66825000 89286000 28925000 13469000 15456000 14470000 6099200 8371100 102140000 42865000 59276000 4413700 1905100 2508500 5143200 1938100 3205100 1018100 548160 469950 18994 2488 19799 99029;99030;99031;99032;99033;99034;99035;99036;99037;99038;99039;99040;99041;99042;99043;99044;99045;99046 100654;100655;100656;100657;100658;100659;100660;100661;100662;100663;100664;100665;100666;100667 100661 14 LASIYAAQNR GMKQEDNAIIEISLKLASIYAAQNRQEFAV EISLKLASIYAAQNRQEFAVAGYEFCISTL K L A N R Q 3 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1105.588 Q6DKK2 Q6DKK2 185 194 TTC19 Tetratricopeptide repeat protein 19, mitochondrial yes yes 2 0.00012839 116.37 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.287 1.2916 23.283 4 Median 0.90091 0.84475 NaN 1 1 Median 1.4476 1.2154 NaN 1 0 Median 1.1443 1.3917 NaN 1 0 Median 1.6396 1.3726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18678000 8935500 9742100 6360800 3193000 3167800 2467700 960440 1507200 8726900 4295700 4431200 1122200 486330 635870 0 0 0 0 0 0 18995 3134 19800 99047;99048;99049;99050;99051 100668;100669;100670;100671;100672 100669 5 LASLEELKR NLQKYQAECSQFKAKLASLEELKRQAELDG SQFKAKLASLEELKRQAELDGKSAKQNLDK K L A K R Q 1 1 0 0 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 1 1057.6132 P15924 P15924 1076 1084 DSP Desmoplakin yes yes 2 1.7577E-10 174.27 By matching By MS/MS By matching By matching By MS/MS By MS/MS 2 3 2 2 1 2 0.86014 0.85892 25.88 12 Median 0.82743 0.84988 1.5879 2 0 Median 0.90687 0.86737 13.921 3 0 Median 0.55712 0.65473 38.296 2 0 Median 0.74402 0.70553 42.292 2 0 Median 0.72513 0.8242 NaN 1 0 Median 1.2595 1.1106 8.3618 2 0 Median 63891000 34356000 29536000 7382700 4374800 3007900 6435900 3161900 3274000 6249200 3564500 2684800 2899200 1714400 1184700 14677000 9637600 5039800 26247000 11903000 14344000 18996 2021 19801 99052;99053;99054;99055;99056;99057;99058;99059;99060;99061;99062;99063 100673;100674;100675;100676;100677 100674 5 LASLFGLDQAAAGHGNEFFQYTAPK DEDDTDFLSPSGGARLASLFGLDQAAAGHG AAGHGNEFFQYTAPKQPKKGQGTAATGNQA R L A P K Q 5 0 1 1 0 2 1 3 1 0 3 1 0 3 1 1 1 0 1 0 0 0 25 0 2652.2973 Q5T1M5 Q5T1M5 21 45 FKBP15 FK506-binding protein 15 yes yes 3 0.066176 5.7935 By MS/MS 2 0.92348 0.89943 13.029 2 Median 0.92348 0.89943 13.029 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7663900 3701000 3962900 7663900 3701000 3962900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18997 3079 19802 99064;99065 100678 100678 1 LASLFSSLEPQIQPVYVPVPK SLFRGEHHSRGGTGRLASLFSSLEPQIQPV SLEPQIQPVYVPVPKQTIKKTKRNEEEEST R L A P K Q 1 0 0 0 0 2 1 0 0 1 3 1 0 1 4 3 0 0 1 3 0 0 21 0 2311.2828 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 56 76 RBM34 RNA-binding protein 34 yes no 3 0.022342 14.31 By MS/MS 1 0.46915 0.44962 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46915 0.44962 NaN 1 0 Median NaN NaN NaN 0 0 Median 1973200 1282700 690450 0 0 0 0 0 0 0 0 0 0 0 0 1973200 1282700 690450 0 0 0 18998 2314 19803 99066 100679;100680 100680 2 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR SMPASLGRMNQGTARLASLMNLGMSSSLNQ TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ R L A S R G 4 1 4 0 0 3 0 3 2 2 6 0 2 1 0 12 1 0 0 0 0 0 41 0 4203.0437 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;D6R8Z5;D6REK4;D6RCM3 P43243 52 92 MATR3 Matrin-3 yes no 4 5.1947E-11 49.585 By matching By MS/MS 1 4 0.99217 1.037 21.697 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96749 1.037 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0189 1.0348 24.448 4 0 Median NaN NaN NaN 0 0 Median 33968000 16250000 17718000 0 0 0 0 0 0 2629000 1472900 1156100 0 0 0 31339000 14777000 16562000 0 0 0 18999 297 19804;19805 99067;99068;99069;99070;99071 100681;100682;100683 100681 142;143 3 LASMATLLAR KNQGKIFAFDLDAKRLASMATLLARAGVSC LDAKRLASMATLLARAGVSCCELAEEDFLA R L A A R A 3 1 0 0 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1045.5954 Q96P11 Q96P11 264 273 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.0035742 56.258 By MS/MS By matching By matching By matching 1 2 1 1 1.2178 1.1907 16.896 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2178 1.222 NaN 1 0 Median 1.2387 1.0624 16.126 2 0 Median 1.4423 1.3971 NaN 1 0 Median 1.2083 0.95181 NaN 1 0 Median 6365400 2828300 3537100 0 0 0 0 0 0 5046100 2230100 2815900 538610 228660 309950 632910 308390 324510 147850 61129 86725 19000 3708 19806 99072;99073;99074;99075;99076 100684 100684 1 LASMSPIGTDLETVK GLQAVFDWVDIAGGKLASMSPIGTDLETVK LASMSPIGTDLETVKQQIEELKQFKSEAYQ K L A V K Q 1 0 0 1 0 0 1 1 0 1 2 1 1 0 1 2 2 0 0 1 0 0 15 0 1560.8069 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4204 4218 DST Dystonin yes no 2 0.0032516 52.693 By MS/MS 1 0.82613 0.89151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82613 0.89151 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4177300 2306200 1871200 0 0 0 0 0 0 4177300 2306200 1871200 0 0 0 0 0 0 0 0 0 19001 934 19807 99077 100685 100685 1 LASNALQEPSSFR AVTPVTILVFCGPARLASNALQEPSSFRVD ARLASNALQEPSSFRVDGIPNDSSDSEMED R L A F R V 2 1 1 0 0 1 1 0 0 0 2 0 0 1 1 3 0 0 0 0 0 0 13 0 1418.7154 Q9H6S0 Q9H6S0 1069 1081 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 3.9386E-10 175.49 By MS/MS By matching By matching 1 1 1 0.90543 0.84973 13.661 3 Plateau 0.90543 0.84973 NaN 1 0 Median 0.90149 0.77086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78467 0.64881 NaN 1 0 Median 20814000 11145000 9669300 17874000 9662000 8211800 2561800 1270700 1291100 0 0 0 0 0 0 0 0 0 378440 212090 166350 19002 3977 19808 99078;99079;99080 100686;100687 100686 2 LASPELER KNSDLLTSPDVGLLKLASPELERLIIQSSN PDVGLLKLASPELERLIIQSSNGHITTTPT K L A E R L 1 1 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 8 0 913.4869 P05412;P17535 P05412 71 78 JUN;JUND Transcription factor AP-1;Transcription factor jun-D no no 2 0.019541 62.546 By MS/MS By MS/MS 1 1 0.67858 0.7063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67858 0.7063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 852730 539900 312820 0 0 0 0 0 0 852730 539900 312820 0 0 0 0 0 0 0 0 0 19003 1866;2041 19809 99081;99082 100688;100689 100688 2 LASQANIAQVLAELK DPIYVKLEKLDIMIRLASQANIAQVLAELK LASQANIAQVLAELKEYATEVDVDFVRKAV R L A L K E 4 0 1 0 0 2 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1567.8934 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 307 321 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 1.4743E-09 105.03 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 2 1.1016 1.0551 16.998 7 Median 1.0816 1.0551 NaN 1 0 Median 1.1616 1.0169 NaN 1 0 Median 1.1016 1.2052 NaN 1 0 Median 1.2171 1.0672 NaN 1 0 Median 1.1863 1.2188 NaN 1 0 Median 0.95905 0.8196 12.229 2 0 Median 47907000 21780000 26127000 5000800 2424700 2576200 31637000 14131000 17506000 8624200 3997900 4626300 415790 202040 213750 627250 231030 396220 1601200 793410 807790 19004 128;2752 19810 99083;99084;99085;99086;99087;99088;99089 100690;100691;100692;100693;100694;100695 100694 6 LASQGDSISSQLGPIHPPPR QKRQLEDGDQPESKKLASQGDSISSQLGPI DSISSQLGPIHPPPRTSMTEEYRVPDGMVG K L A P R T 1 1 0 1 0 2 0 2 1 2 2 0 0 0 4 4 0 0 0 0 0 0 20 0 2056.0702 Q92945;A0A087WTP3;M0R0I5 Q92945 123 142 KHSRP Far upstream element-binding protein 2 yes no 3;4 9.2403E-16 95.767 By MS/MS By MS/MS By MS/MS 2 3 1 0.6586 0.64245 11.623 6 Median 0.71077 0.67249 6.495 2 2 Median NaN NaN NaN 0 0 Median 0.58745 0.61639 11.301 3 2 Median NaN NaN NaN 0 0 Median 0.70843 0.71847 NaN 1 1 Median NaN NaN NaN 0 0 Median 284530000 159860000 124670000 23712000 14191000 9521700 0 0 0 245940000 137890000 108050000 0 0 0 14874000 7777500 7096900 0 0 0 19005 3568 19811 99090;99091;99092;99093;99094;99095 100696;100697;100698;100699;100700;100701;100702;100703 100699 8 LASRPTRPPEPR VPLQIDMKPEVPREKLASRPTRPPEPRHIP REKLASRPTRPPEPRHIPANRGEIKGSESA K L A P R H 1 3 0 0 0 0 1 0 0 0 1 0 0 0 4 1 1 0 0 0 0 0 12 2 1375.7684 Q6PKG0;A0A0B4J210;E5RH50;H0YBW1;E5RHK4;H0YAN4 Q6PKG0 268 279 LARP1 La-related protein 1 yes no 3 0.0051117 34.768 By matching By MS/MS By matching 1 1 1 0.56276 0.69071 12.804 3 Median 0.55594 0.69071 NaN 1 0 Median 0.56276 0.57788 NaN 1 0 Median 0.64919 0.74077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3191600 1967400 1224200 448890 262300 186590 2602500 1634300 968200 140150 70767 69387 0 0 0 0 0 0 0 0 0 19006 3176 19812 99096;99097;99098 100704;100705 100704 2 LASTGSGQSFLAR YNMGMTLHKKAAEDRLASTGSGQSFLARQR DRLASTGSGQSFLARQRQATSSRRSYPGHV R L A A R Q 2 1 0 0 0 1 0 2 0 0 2 0 0 1 0 3 1 0 0 0 0 0 13 0 1293.6677 Q86VS8 Q86VS8 685 697 HOOK3 Protein Hook homolog 3 yes yes 2 0.0012355 72.006 By MS/MS 1 1.4518 1.4201 NaN 1 Median 1.4518 1.4201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2760300 1218600 1541800 2760300 1218600 1541800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19007 3289 19813 99099 100706 100706 1 LASTGTSEYAAYDQNITPLHTDFSGSSTER PDAAFQLTHAAQQLKLASTGTSEYAAYDQN ITPLHTDFSGSSTERI______________ K L A E R I 3 1 1 2 0 1 2 2 1 1 2 0 0 1 1 5 5 0 2 0 0 0 30 0 3218.464 H3BRY6;B4DVT3;B4DJL6;Q96SY0 H3BRY6 438 467 VWA9 von Willebrand factor A domain-containing protein 9 yes no 3 3.3284E-05 28.223 By MS/MS By matching 1 1 0.93468 0.87366 5.4423 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89775 0.90793 NaN 1 0 Median 0.97312 0.84068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9623200 4731800 4891400 0 0 0 0 0 0 8529500 4203300 4326200 1093600 528490 565160 0 0 0 0 0 0 19008 593 19814 99100;99101 100707 100707 1 LASTLVHLGEYQAAVDGAR DAAKLLYNNVSNFGRLASTLVHLGEYQAAV LVHLGEYQAAVDGARKANSTRTWKEVCFAC R L A A R K 4 1 0 1 0 1 1 2 1 0 3 0 0 0 0 1 1 0 1 2 0 0 19 0 1970.0221 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1231 1249 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 3.7589E-25 178.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 7 8 3 2 2 1.2731 1.1715 30.071 29 Median 1.2731 1.2009 21.657 7 0 Median 1.3768 1.1599 17.067 7 2 Median 1.0142 1.1139 28.705 8 3 Median 1.4279 1.2573 19.534 3 0 Plateau 1.0798 1.1126 27.519 2 1 Median 0.89442 0.76036 100.28 2 0 Median 1001000000 435480000 565530000 665510000 281870000 383650000 163240000 67598000 95643000 146680000 73497000 73185000 6136700 2431800 3704900 18824000 9766700 9057100 611530 317720 293820 19009 44 19815 99102;99103;99104;99105;99106;99107;99108;99109;99110;99111;99112;99113;99114;99115;99116;99117;99118;99119;99120;99121;99122;99123;99124;99125;99126;99127;99128;99129;99130 100708;100709;100710;100711;100712;100713;100714;100715;100716;100717;100718;100719;100720;100721;100722;100723;100724;100725;100726;100727;100728;100729;100730;100731;100732;100733;100734;100735;100736;100737;100738;100739;100740;100741 100719 34 LASTNSSVLGADLPSSMK EEEEAEAETAKATPRLASTNSSVLGADLPS TNSSVLGADLPSSMKEKAKAETEKAGKTGN R L A M K E 2 0 1 1 0 0 0 1 0 0 3 1 1 0 1 5 1 0 0 1 0 0 18 0 1776.8928 E7ETY2;A0A3B3IS06;H0Y8Y7;A0A2R8Y857;H0YA99;Q13428 Q13428 105 122 TCOF1 Treacle protein no no 2 2.1619E-14 112.51 By matching By MS/MS By MS/MS 1 6 8 1.0463 0.91798 15.425 15 Median NaN NaN NaN 0 0 Median 1.2066 1.033 NaN 1 0 Median 0.86881 0.9392 18.187 6 1 Median 1.0736 0.91542 14.819 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85642000 46303000 39340000 0 0 0 1082200 476380 605820 74912000 41323000 33589000 9647800 4503100 5144700 0 0 0 0 0 0 19010 2816;891 19816;19817 99131;99132;99133;99134;99135;99136;99137;99138;99139;99140;99141;99142;99143;99144;99145 100742;100743;100744;100745;100746;100747;100748;100749;100750;100751 100746 323 9 LASTNSSVLGADLPSSMKEK EEEEAEAETAKATPRLASTNSSVLGADLPS SSVLGADLPSSMKEKAKAETEKAGKTGNSM R L A E K A 2 0 1 1 0 0 1 1 0 0 3 2 1 0 1 5 1 0 0 1 0 0 20 1 2034.0303 E7ETY2;A0A3B3IS06;H0Y8Y7;A0A2R8Y857;H0YA99;Q13428 Q13428 105 124 TCOF1 Treacle protein no no 3 3.488E-19 113.47 By matching By MS/MS By matching By matching 1 6 1 2 0.91737 1.0054 44.262 10 Median 0.36414 0.37339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87725 1.0174 29.847 6 2 Median 1.1046 1.0319 NaN 1 0 Median 1.2092 1.2758 37.37 2 0 Median NaN NaN NaN 0 0 Median 134590000 80456000 54134000 47652000 34578000 13074000 0 0 0 81838000 43429000 38409000 1060000 411790 648240 4039800 2037300 2002500 0 0 0 19011 2816;891 19818;19819 99146;99147;99148;99149;99150;99151;99152;99153;99154;99155 100752;100753;100754;100755;100756;100757 100752 323 6 LASTSDIEEKENR KGTRLAYVAPTIPRRLASTSDIEEKENRDS RRLASTSDIEEKENRDSSSLRTSSSYTRRK R L A N R D 1 1 1 1 0 0 3 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 13 1 1490.7213 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 505 517 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 0.064053 13.413 By MS/MS 1 0.89406 1.0217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89406 1.0217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1169500 652620 516870 0 0 0 0 0 0 1169500 652620 516870 0 0 0 0 0 0 0 0 0 19012 1508 19820 99156 100758;100759 100759 2 LASVLPEVKPK PEERPPPAADASEPRLASVLPEVKPKVEEG SEPRLASVLPEVKPKVEEGGRHPSPCQFTI R L A P K V 1 0 0 0 0 0 1 0 0 0 2 2 0 0 2 1 0 0 0 2 0 0 11 1 1179.7227 O14686 O14686 3111 3121 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.00088565 76.827 By MS/MS By matching 1 1 0.64543 0.69299 21.812 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52343 0.59394 NaN 1 0 Median 0.79586 0.80855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7704100 5077400 2626700 0 0 0 0 0 0 7083700 4710700 2373000 620370 366720 253650 0 0 0 0 0 0 19013 1490 19821 99157;99158 100760;100761 100761 2 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA AAPAAGSAPAAAEEKKDEKKEESEESDDDM K L A E K K 14 0 0 0 0 0 2 4 0 0 1 1 0 0 4 4 0 0 0 3 0 0 33 0 2773.4246 P05387;H0YDD8 P05387 62 94 RPLP2 60S acidic ribosomal protein P2 no no 2;3;4 3.9715E-65 126.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 2 1 3 1 0.55072 0.51523 15.751 12 Median 0.52946 0.49929 7.2032 4 2 Median 0.57924 0.47888 NaN 1 0 Median 0.62237 0.59137 20.515 2 1 Median 0.62399 0.50827 NaN 1 1 Median 0.50779 0.55241 21.979 3 1 Median 0.64703 0.51327 NaN 1 0 Median 217120000 144010000 73114000 56632000 38755000 17877000 4932100 2893100 2039000 80520000 53464000 27056000 1192800 776030 416770 72409000 47293000 25116000 1438900 829580 609330 19014 1864;1175 19822 99159;99160;99161;99162;99163;99164;99165;99166;99167;99168;99169;99170 100762;100763;100764;100765;100766;100767;100768;100769;100770;100771;100772;100773;100774 100773 13 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA APAAGSAPAAAEEKKDEKKEESEESDDDMG K L A K K D 14 0 0 0 0 0 2 4 0 0 1 2 0 0 4 4 0 0 0 3 0 0 34 1 2901.5196 P05387;H0YDD8 P05387 62 95 RPLP2 60S acidic ribosomal protein P2 no no 3 2.7229E-15 53.728 By matching By MS/MS By MS/MS 1 1 1 0.66571 0.5771 29.88 3 Median 0.73365 0.68704 NaN 1 0 Median 0.66571 0.5771 NaN 1 0 Median 0.37548 0.38383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12952000 7588500 5363700 3385900 1846400 1539500 6939700 4026600 2913100 2626600 1715500 911120 0 0 0 0 0 0 0 0 0 19015 1864;1175 19823 99171;99172;99173 100775;100776;100777 100776 3 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA AGSAPAAAEEKKDEKKEESEESDDDMGFGL K L A E K K 14 0 0 1 0 0 3 4 0 0 1 3 0 0 4 4 0 0 0 3 0 0 37 2 3273.6841 P05387;H0YDD8 P05387 62 98 RPLP2 60S acidic ribosomal protein P2 no no 4 0.00069833 33.476 By MS/MS By MS/MS 1 1 0.61917 0.58231 2.727 2 Median NaN NaN NaN 0 0 Median 0.71594 0.57119 NaN 1 0 Median 0.53547 0.59365 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24109000 16144000 7964500 0 0 0 7698100 3979500 3718600 16410000 12165000 4245900 0 0 0 0 0 0 0 0 0 19016 1864;1175 19824 99174;99175 100778;100779 100778 2 LASVPEYR REGSPIPHDPEFGSKLASVPEYRYSQSAPG DPEFGSKLASVPEYRYSQSAPGSPVSAQPV K L A Y R Y 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 933.49198 P85037 P85037 457 464 FOXK1 Forkhead box protein K1 yes yes 2 0.01337 53.166 By MS/MS 1 1.2929 1.1141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2929 1.1141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2533500 1111700 1421800 0 0 0 0 0 0 0 0 0 2533500 1111700 1421800 0 0 0 0 0 0 19017 2669 19825 99176 100780 100780 1 LASVPGSQTVVVK VKATFNPAQDKCGIRLASVPGSQTVVVKEI IRLASVPGSQTVVVKEITIHTKLPAKDVYE R L A V K E 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 2 1 0 0 4 0 0 13 0 1283.7449 O00592 O00592 399 411 PODXL Podocalyxin yes yes 2 0.0010538 60.102 By MS/MS By MS/MS 1 3 0.92227 0.84852 30.943 4 Median 1.002 0.96607 NaN 1 0 Median 1.187 1.0545 36.039 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25313000 12186000 13127000 16596000 8341200 8254800 8716800 3844300 4872500 0 0 0 0 0 0 0 0 0 0 0 0 19018 1473 19826 99177;99178;99179;99180 100781;100782;100783 100781 3 LASYLDK LAGGEKATMQNLNDRLASYLDKVRALEEAN TMQNLNDRLASYLDKVRALEEANTELEVKI R L A D K V 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 808.43307 P13645;CON__P13645;A0A3B3ITG2;CON__P08730-1;CON__P08779;P08779;P35527;CON__P35527;P02533;CON__P02533;CON__Q04695;Q04695;K7EPJ9;CON__P05784;CON__P08727;P08727;C9JM50;CON__Q99456;Q99456;CON__P19001 CON__Q04695 95 101 KRT10;KRT16;KRT9;KRT14;KRT17;KRT19;KRT12 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 no no 1;2 5.6482E-05 124.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 12 8 13 3 8 0.041056 0.038048 169.81 45 Median 0.030752 0.028893 56.118 4 4 Median 0.042181 0.035434 163.91 11 9 Median 0.051259 0.048123 147.15 7 3 Median 0.012793 0.011055 193.09 12 10 Median 0.15203 0.14532 140.04 3 2 Median 0.26205 0.22016 191.63 8 4 Median 947560000 884800000 62764000 49697000 48343000 1353700 298390000 277670000 20719000 79623000 67598000 12025000 203380000 194360000 9013400 90906000 84091000 6814200 225580000 212740000 12839000 + 19019 768;756;2242;739;752;754;749;760;753 19827 99181;99182;99183;99184;99185;99186;99187;99188;99189;99190;99191;99192;99193;99194;99195;99196;99197;99198;99199;99200;99201;99202;99203;99204;99205;99206;99207;99208;99209;99210;99211;99212;99213;99214;99215;99216;99217;99218;99219;99220;99221;99222;99223;99224;99225;99226;99227;99228;99229 100784;100785;100786;100787;100788;100789;100790;100791;100792;100793;100794;100795;100796;100797;100798;100799;100800;100801;100802;100803;100804;100805;100806;100807;100808;100809;100810;100811;100812;100813;100814;100815;100816;100817;100818;100819;100820;100821;100822;100823;100824;100825;100826;100827;100828 100828 45 LASYLDKVQALEEANNDLENK LTANEKSTMQELNSRLASYLDKVQALEEAN KVQALEEANNDLENKIQDWYDKKGPAAIQK R L A N K I 3 0 3 2 0 1 3 0 0 0 4 2 0 0 0 1 0 0 1 1 0 0 21 1 2376.1809 P35527;CON__P35527 P35527 164 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 4.1567E-79 183.6 By MS/MS By MS/MS By MS/MS 5 3 2 0.082062 0.084404 86.966 7 Median 0.082062 0.084404 68.122 3 3 Median NaN NaN NaN 0 0 Median 0.21197 0.24384 83.576 2 2 Median NaN NaN NaN 0 0 Median 0.05587 0.059974 0.99097 2 2 Median NaN NaN NaN 0 0 Median 116960000 113010000 3944100 78835000 77218000 1617300 0 0 0 13639000 12103000 1535700 0 0 0 24481000 23690000 791120 0 0 0 + 19020 2242 19828 99230;99231;99232;99233;99234;99235;99236;99237;99238;99239 100829;100830;100831;100832;100833;100834;100835;100836;100837;100838 100830 10 LASYLDKVR LAGGEKATMQNLNDRLASYLDKVRALEEAN QNLNDRLASYLDKVRALEEANTELEVKIRD R L A V R A 1 1 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 9 1 1063.6026 P13645;CON__P13645;A0A3B3ITG2;CON__P08730-1;CON__P08779;P08779;P02533;CON__P02533;CON__Q04695;Q04695;K7EPJ9;CON__P08727;P08727;C9JM50;CON__Q99456;Q99456;CON__P19001 CON__Q04695 95 103 KRT10;KRT16;KRT14;KRT17;KRT19;KRT12 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 no no 2 1.7382E-46 199.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 4 5 8 4 0.06886 0.059569 131.42 25 Median 0.048385 0.049499 60.288 6 5 Median 0.11247 0.11151 36.625 3 2 Median 0.094851 0.10282 257 4 3 Median 0.043266 0.041633 128.4 4 3 Median 0.040913 0.043504 129.89 5 3 Median 0.29755 0.26381 164.17 3 1 Median 1675000000 1588400000 86676000 297110000 292540000 4565500 198140000 194500000 3637300 123880000 110780000 13101000 115890000 107600000 8291600 694430000 651270000 43156000 245610000 231680000 13924000 + 19021 768;756;739;752;754;760;753 19829 99240;99241;99242;99243;99244;99245;99246;99247;99248;99249;99250;99251;99252;99253;99254;99255;99256;99257;99258;99259;99260;99261;99262;99263;99264;99265;99266;99267;99268;99269;99270;99271;99272;99273 100839;100840;100841;100842;100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856;100857;100858;100859;100860;100861;100862;100863;100864;100865;100866;100867;100868 100850 30 LASYLDR GIQNEKETMQSLNDRLASYLDRVRSLETEN TMQSLNDRLASYLDRVRSLETENRRLESKI R L A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 7 0 836.43922 P05783;F8VZY9 P05783 91 97 KRT18 Keratin, type I cytoskeletal 18 yes no 2 4.5047E-05 155.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 5 6 1.33 1.2153 20.799 20 Median 1.5717 1.5173 31.732 2 0 Median 1.5765 1.3458 14.553 2 0 Median 1.3557 1.3296 9.633 3 1 Median 1.2342 1.0486 4.7393 2 0 Median 1.4031 1.3942 14.792 5 1 Median 1.3335 1.0111 7.7438 6 1 Plateau 1006600000 439110000 567460000 38049000 14800000 23249000 92815000 36375000 56439000 208900000 87910000 120990000 285200000 136590000 148610000 129700000 52745000 76954000 251900000 110690000 141210000 19022 1869 19830 99274;99275;99276;99277;99278;99279;99280;99281;99282;99283;99284;99285;99286;99287;99288;99289;99290;99291;99292;99293 100869;100870;100871;100872;100873;100874;100875;100876;100877;100878;100879;100880;100881;100882;100883;100884;100885;100886;100887;100888;100889;100890;100891;100892;100893;100894;100895;100896;100897 100880 29 LATALQKLEEAEK RIQLVEEELDRAQERLATALQKLEEAEKAA ERLATALQKLEEAEKAADESERGMKVIENR R L A E K A 3 0 0 0 0 1 3 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 13 1 1442.7981 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 70 82 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 2;3 8.919E-06 117.67 By MS/MS By MS/MS 2 1 1.1298 1.0983 49.865 3 Median 1.205 1.1723 9.2198 2 0 Median 0.54418 0.49792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23072000 10702000 12370000 20181000 8819300 11362000 2890200 1882800 1007500 0 0 0 0 0 0 0 0 0 0 0 0 + 19023 63;1303;2629;1193;1249 19831 99294;99295;99296 100898;100899;100900;100901;100902 100900 5 LATAMQEGEYDAERPPSKPPPVELR CLRQSCNILISTMNKLATAMQEGEYDAERP DAERPPSKPPPVELRAAALRAEITDAEGLG K L A L R A 3 2 0 1 0 1 4 1 0 0 2 1 1 0 5 1 1 0 1 1 0 0 25 2 2780.3803 E7EX90;Q14203 E7EX90 886 910 DCTN1 Dynactin subunit 1 yes no 3 5.8562E-36 132.72 By MS/MS By matching 1 1 0.6873 0.74005 71.341 2 Median 0.43797 0.44687 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0786 1.2256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26227000 15790000 10437000 23242000 14773000 8468700 0 0 0 2985400 1016800 1968600 0 0 0 0 0 0 0 0 0 19024 906 19832 99297;99298 100903 100903 1 LATATFAGIENK ADLPPANPDHIGGYRLATATFAGIENKFGL GYRLATATFAGIENKFGLYLPKFKSPSVAV R L A N K F 3 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 12 0 1234.6558 O75746 O75746 641 652 SLC25A12 Calcium-binding mitochondrial carrier protein Aralar1 yes yes 2 0.029201 28.727 By MS/MS 1 1.1772 1.0161 NaN 1 Median NaN NaN NaN 0 0 Median 1.1772 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427400 1098400 1329100 0 0 0 2427400 1098400 1329100 0 0 0 0 0 0 0 0 0 0 0 0 19025 1694 19833 99299 100904 100904 1 LATDNIGYIDWDPYVPK NLPQWEGQLVNLFARLATDNIGYIDWDPYV TDNIGYIDWDPYVPKIFTRILRSLNLPVGS R L A P K I 1 0 1 3 0 0 0 1 0 2 1 1 0 0 2 0 1 1 2 1 0 0 17 0 1978.9676 Q14997;F8WBH5 Q14997 262 278 PSME4 Proteasome activator complex subunit 4 yes no 2 0.034898 23.236 By MS/MS 1 0.84188 0.7951 NaN 1 Median 0.84188 0.7951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2132900 1103300 1029600 2132900 1103300 1029600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19026 2906 19834 99300 100905 100905 1 LATEFELR QKTAVEKAGPEMDKRLATEFELRKHARQEG GPEMDKRLATEFELRKHARQEGRRYCDPVV R L A L R K 1 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 8 0 977.5182 A5YKK6 A5YKK6 1523 1530 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.01337 53.166 By MS/MS 1 1.2641 1.0728 NaN 1 Median NaN NaN NaN 0 0 Median 1.2641 1.0728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3131500 1478700 1652800 0 0 0 3131500 1478700 1652800 0 0 0 0 0 0 0 0 0 0 0 0 19027 503 19835 99301 100906;100907 100906 2 LATELYHQK DLIKEVLSMDDEIQKLATELYHQKSVLIMG DDEIQKLATELYHQKSVLIMGRGYHYATCL K L A Q K S 1 0 0 0 0 1 1 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1101.5819 Q06210 Q06210 548 556 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0036618 63.565 By matching By MS/MS 1 1 1.6195 1.5082 11.753 2 Median 1.675 1.6389 NaN 1 0 Median 1.5658 1.3879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4310600 1727200 2583500 2518300 939550 1578800 1792300 787620 1004700 0 0 0 0 0 0 0 0 0 0 0 0 19028 2723 19836 99302;99303 100908 100908 1 LATEYMSSAR DLDQRTEDLKAEIDKLATEYMSSARSLSSE AEIDKLATEYMSSARSLSSEEKLALLKQIQ K L A A R S 2 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 1 0 1 0 0 0 10 0 1127.5281 Q9UNL4 Q9UNL4 45 54 ING4 Inhibitor of growth protein 4 yes yes 2 0.0087066 46.158 By MS/MS 1 1.3099 1.0632 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3099 1.0632 NaN 1 0 Median 1816500 737930 1078600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1816500 737930 1078600 19029 4344 19837 99304 100909 100909 1 LATFWYYAK TPALVNAAVTYSKPRLATFWYYAKVELVPP TYSKPRLATFWYYAKVELVPPTPAEIPRAI R L A A K V 2 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 1 2 0 0 0 9 0 1161.5859 O75964;E9PN17;A0A3B3ITX4 O75964 27 35 ATP5L ATP synthase subunit g, mitochondrial yes no 2 0.00098836 86.794 By MS/MS By MS/MS By matching 1 2 1 1.2387 1.1342 8.6044 4 Median 1.1322 1.0155 NaN 1 0 Median 1.4291 1.1836 7.8861 2 0 Median 1.1307 1.1492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118700000 54632000 64065000 112640000 52130000 60506000 5529000 2295900 3233100 532030 206770 325260 0 0 0 0 0 0 0 0 0 19030 1713 19838 99305;99306;99307;99308 100910;100911;100912;100913 100910 4 LATLETEAAQHQAVVDGLTR ADEQHKHVEAELRSRLATLETEAAQHQAVV TEAAQHQAVVDGLTRKYMETIEKLQNDKAK R L A T R K 4 1 0 1 0 2 2 1 1 0 3 0 0 0 0 0 3 0 0 2 0 0 20 0 2122.1018 Q6ZMI0 Q6ZMI0 144 163 PPP1R21 Protein phosphatase 1 regulatory subunit 21 yes yes 3 1.2503E-15 88.264 By MS/MS 1 0.45381 0.48324 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45381 0.48324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6679600 4519800 2159700 0 0 0 0 0 0 6679600 4519800 2159700 0 0 0 0 0 0 0 0 0 19031 3197 19839 99309 100914 100914 1 LATLLGLQAPPTR RLLDMDGIIVEKQRRLATLLGLQAPPTRIG RRLATLLGLQAPPTRIGLINDMVRFNVLQY R L A T R I 2 1 0 0 0 1 0 1 0 0 4 0 0 0 2 0 2 0 0 0 0 0 13 0 1349.8031 Q14152 Q14152 355 367 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 5.2113E-07 152.07 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 1 1 2 0.8965 0.79792 9.1149 8 Median 0.76504 0.73068 4.8952 2 0 Median 0.88661 0.75255 NaN 1 0 Median 0.78073 0.85618 NaN 1 0 Median 0.93733 0.8201 NaN 1 0 Median 0.90651 0.95221 NaN 1 0 Median 0.95746 0.79792 0.81309 2 0 Median 64710000 35091000 29618000 33905000 18993000 14912000 24161000 12513000 11648000 2561000 1466400 1094600 458870 227280 231580 3032900 1602600 1430300 590640 289300 301340 19032 2860 19840 99310;99311;99312;99313;99314;99315;99316;99317 100915;100916;100917;100918;100919;100920;100921 100915 7 LATLNEKLTALER IADFLNSFDMSCRSRLATLNEKLTALERRI SRLATLNEKLTALERRIEYIEARVTKGETL R L A E R R 2 1 1 0 0 0 2 0 0 0 4 1 0 0 0 0 2 0 0 0 0 0 13 1 1470.8406 Q8WUW1 Q8WUW1 47 59 BRK1 Protein BRICK1 yes yes 3 0.02416 33.685 By MS/MS 1 0.99026 0.97104 NaN 1 Median 0.99026 0.97104 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1894100 934930 959180 1894100 934930 959180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19033 3497 19841 99318 100922 100922 1 LATLNIHDYLTK AGFLMALGLNGHLTKLATLNIHDYLTKGHE LTKLATLNIHDYLTKGHEMTSIGLLLGVSA K L A T K G 1 0 1 1 0 0 0 0 1 1 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1400.7664 Q9H1A4;H0Y564 Q9H1A4 1188 1199 ANAPC1 Anaphase-promoting complex subunit 1 yes no 3 0.022279 23.092 By matching By MS/MS By matching 1 1 1 0.9515 1.06 24.807 3 Median NaN NaN NaN 0 0 Median 0.77906 0.69122 NaN 1 0 Median 0.9515 1.06 NaN 1 0 Median 1.1815 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4910700 2506500 2404200 0 0 0 107250 35636 71614 4636200 2397200 2239000 167230 73576 93652 0 0 0 0 0 0 19034 3933 19842 99319;99320;99321 100923;100924 100923 2 LATMMVQGQEYEAGGSVIHPLNLHMK DVKIDLFEREEVGGRLATMMVQGQEYEAGG EAGGSVIHPLNLHMKRFVKDLGLSAVQASG R L A M K R 2 0 1 0 0 2 2 3 2 1 3 1 3 0 1 1 1 0 1 2 0 0 26 0 2853.3976 Q9UHG3;F8W8W4 Q9UHG3 75 100 PCYOX1 Prenylcysteine oxidase 1 yes no 4 2.4211E-05 33.425 By MS/MS By matching By matching 2 1 1 0.83271 0.8257 17.687 4 Median 0.82484 0.79053 19.714 2 0 Median 1.1348 1.0138 NaN 1 0 Median 0.72862 0.75021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9208200 4673400 4534800 6475700 3124000 3351700 426420 209800 216630 2306100 1339600 966530 0 0 0 0 0 0 0 0 0 19035 4279 19843 99322;99323;99324;99325 100925;100926 100926 2 LATNAAVTVLR AGILDTYLGKYWAIKLATNAAVTVLRVDQI WAIKLATNAAVTVLRVDQIIMAKPAGGPKP K L A L R V 3 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1127.6663 P50990;H7C2U0 P50990 510 520 CCT8 T-complex protein 1 subunit theta yes no 2 0.0001134 121.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 1 1 2 4 1.2804 1.1323 57.261 21 Median 1.1981 1.1164 93.386 6 1 Median 1.2804 1.0765 27 7 0 Median 1.2123 1.1969 NaN 1 0 Median 1.2673 1.0838 NaN 1 0 Median 2.2236 2.2435 17.998 2 0 Median 1.4205 1.1897 17.702 4 0 Median 384180000 178860000 205320000 221100000 105820000 115280000 91580000 41854000 49726000 39117000 17558000 21560000 17862000 8118700 9743400 8225000 2896900 5328100 6292600 2612800 3679800 19036 2423 19844 99326;99327;99328;99329;99330;99331;99332;99333;99334;99335;99336;99337;99338;99339;99340;99341;99342;99343;99344;99345;99346 100927;100928;100929;100930;100931;100932;100933;100934;100935;100936;100937;100938;100939;100940;100941;100942;100943;100944;100945;100946;100947;100948 100930 22 LATNTSAPDLK PTSAKPSSTTPRLSRLATNTSAPDLKNVRS RLSRLATNTSAPDLKNVRSKVGSTENIKHQ R L A L K N 2 0 1 1 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 0 0 0 11 0 1129.5979 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 2068 2078 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.3279E-05 145.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 10 1 1 1.086 0.91963 27.161 17 Median 0.95451 0.89721 2.4263 2 1 Median 0.7472 0.65644 NaN 1 0 Median 1.3222 1.3552 38.388 4 1 Median 1.1025 0.93025 13.48 8 2 Median 1.3092 1.3822 NaN 1 1 Median 0.86838 0.7441 NaN 1 0 Median 113310000 52903000 60404000 60002000 28083000 31919000 1517100 881520 635610 20780000 9136200 11644000 26082000 12652000 13430000 2588500 978830 1609700 2337900 1172100 1165800 19037 895 19845 99347;99348;99349;99350;99351;99352;99353;99354;99355;99356;99357;99358;99359;99360;99361;99362;99363;99364;99365 100949;100950;100951;100952;100953;100954;100955;100956;100957;100958;100959;100960;100961;100962;100963;100964;100965;100966;100967;100968;100969;100970;100971;100972 100959 24 LATPELLETAQALER EVNEILFCQLHPEQKLATPELLETAQALER LATPELLETAQALERTLRKPGRGWDDTYVL K L A E R T 3 1 0 0 0 1 3 0 0 0 4 0 0 0 1 0 2 0 0 0 0 0 15 0 1653.8938 Q8N6R0 Q8N6R0 660 674 METTL13 Methyltransferase-like protein 13 yes yes 2 0.010681 29.936 By MS/MS By matching 1 1 1.325 1.1555 11.764 2 Median NaN NaN NaN 0 0 Median 1.2027 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4596 1.2557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2368700 1134300 1234400 0 0 0 1277500 473880 803640 0 0 0 1091200 660420 430790 0 0 0 0 0 0 19038 3388 19846 99366;99367 100973 100973 1 LATPTYGDLNHLVSATMSGVTTSLR IDNEALYDICFRTLKLATPTYGDLNHLVSA HLVSATMSGVTTSLRFPGQLNADLRKLAVN K L A L R F 2 1 1 1 0 0 0 2 1 0 4 0 1 0 1 3 5 0 1 2 0 0 25 0 2604.3218 A0A0B4J269;Q13509;G3V2A3 A0A0B4J269 564 588 TUBB3 Tubulin beta-3 chain yes no 3 0.0018666 25.407 By matching By MS/MS 1 1 1.077 0.99495 7.9466 2 Median NaN NaN NaN 0 0 Median 1.111 0.94059 NaN 1 0 Median 1.044 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7968700 3908500 4060300 0 0 0 5580900 2806000 2774900 2387800 1102500 1285400 0 0 0 0 0 0 0 0 0 19039 216 19847 99368;99369 100974;100975 100974 2 LATQLTGPVMPVR PSAPKKGDSSAEELKLATQLTGPVMPVRNV LKLATQLTGPVMPVRNVYKKEKARVITEEE K L A V R N 1 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 2 0 0 2 0 0 13 0 1381.7752 P26373 P26373 146 158 RPL13 60S ribosomal protein L13 yes yes 2 3.7127E-41 218.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 2 4 9 8 0.89576 0.814 22.649 36 Median 0.82684 0.77945 25.876 6 1 Median 0.9252 0.78057 5.0909 7 1 Median 0.86754 0.83289 7.0353 2 0 Median 1.2009 0.97001 13.745 4 0 Median 0.83169 0.84775 27.94 9 1 Median 1.0006 0.80692 22.406 8 1 Median 1478000000 789630000 688400000 658910000 366580000 292320000 113960000 59046000 54913000 94947000 49973000 44974000 27550000 13664000 13886000 433020000 231010000 202010000 149650000 69359000 80294000 19040 2144 19848;19849 99370;99371;99372;99373;99374;99375;99376;99377;99378;99379;99380;99381;99382;99383;99384;99385;99386;99387;99388;99389;99390;99391;99392;99393;99394;99395;99396;99397;99398;99399;99400;99401;99402;99403;99404;99405 100976;100977;100978;100979;100980;100981;100982;100983;100984;100985;100986;100987;100988;100989;100990;100991;100992;100993;100994;100995;100996;100997;100998;100999;101000;101001;101002;101003;101004;101005;101006;101007;101008;101009;101010;101011;101012;101013;101014;101015;101016;101017;101018;101019;101020;101021;101022;101023;101024;101025;101026 100983 908 51 LATQSNEITIPVTFESR LSPEGTLTVEAPMPKLATQSNEITIPVTFE TQSNEITIPVTFESRAQLGGPEAAKSDETA K L A S R A 1 1 1 0 0 1 2 0 0 2 1 0 0 1 1 2 3 0 0 1 0 0 17 0 1904.9844 P04792;C9J3N8 P04792 172 188 HSPB1 Heat shock protein beta-1 yes no 2;3 2.3402E-14 159.08 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 1 4 3 0.81744 0.83772 48.507 17 Median 0.68483 0.65843 31.365 4 0 Median 1.1942 1.008 25.739 2 0 Median 0.52759 0.50659 91.39 3 0 Median 1.3252 1.0973 NaN 1 0 Median 0.63825 0.66373 22.01 4 0 Median 1.1569 0.89835 13.589 3 0 Median 673810000 370360000 303450000 525430000 280770000 244660000 11860000 5633200 6226500 42889000 27468000 15421000 2221200 884810 1336400 88954000 54564000 34391000 2453100 1044600 1408500 19041 1851 19850 99406;99407;99408;99409;99410;99411;99412;99413;99414;99415;99416;99417;99418;99419;99420;99421;99422 101027;101028;101029;101030;101031;101032;101033;101034;101035;101036;101037;101038;101039;101040;101041;101042;101043;101044 101028 18 LATSLGASEQALR AGVLQSGFQELSLNKLATSLGASEQALRLI NKLATSLGASEQALRLIISIFLGYPFALFY K L A L R L 3 1 0 0 0 1 1 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 13 0 1315.7096 Q6P1A2;F5H0M4;F5H680;F5H7K7;B7Z3N5;F5GYT3 Q6P1A2 31 43 LPCAT3 Lysophospholipid acyltransferase 5 yes no 2 5.5542E-05 138.22 By MS/MS By MS/MS 1 1 1.0625 0.94378 5.4354 2 Median 0.92246 0.90819 NaN 1 0 Median 1.2238 0.98076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24788000 11783000 13006000 8745700 4622800 4122900 16043000 7159800 8882800 0 0 0 0 0 0 0 0 0 0 0 0 19042 3149 19851 99423;99424 101045;101046;101047 101046 3 LATSVLKDEK SDTVLMFNVALVLQRLATSVLKDEKSNLKE LVLQRLATSVLKDEKSNLKEVLNAVKELEL R L A E K S 1 0 0 1 0 0 1 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 10 1 1102.6234 Q6PD62 Q6PD62 764 773 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.0023111 101.65 By MS/MS By MS/MS By MS/MS 1 1 2 1.0433 1.0357 24.395 4 Median NaN NaN NaN 0 0 Median 1.1349 1.0574 NaN 1 0 Median 1.0221 1.1708 NaN 1 0 Median 0.85614 0.82588 29.069 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10715000 5164300 5550600 0 0 0 4237600 1903600 2334000 4100400 2049700 2050700 2376900 1211000 1165900 0 0 0 0 0 0 19043 3168 19852 99425;99426;99427;99428 101048;101049;101050;101051 101050 4 LATTILQHWK QSFRERANQKHQGLKLATTILQHWKKCDSW HQGLKLATTILQHWKKCDSWWAKDSPLETK K L A W K K 1 0 0 0 0 1 0 0 1 1 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1209.687 P78527 P78527 1618 1627 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00012894 111.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 5 4 1 1.135 1.2324 73.168 21 Median 1.0335 1.0141 8.0702 6 4 Median 1.5184 1.3439 136.75 5 2 Median 0.98544 1.0892 11.449 5 3 Median 2.0453 1.857 44.08 4 0 Median NaN NaN NaN 0 0 Median 1.5554 1.3482 NaN 1 0 Median 400030000 191320000 208710000 185610000 86255000 99354000 56595000 26859000 29736000 149330000 75612000 73714000 8293600 2534600 5759000 0 0 0 208080 56663 151420 19044 2647 19853 99429;99430;99431;99432;99433;99434;99435;99436;99437;99438;99439;99440;99441;99442;99443;99444;99445;99446;99447;99448;99449 101052;101053;101054;101055;101056;101057;101058;101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073;101074;101075 101052 24 LATTILQHWKK QSFRERANQKHQGLKLATTILQHWKKCDSW QGLKLATTILQHWKKCDSWWAKDSPLETKM K L A K K C 1 0 0 0 0 1 0 0 1 1 2 2 0 0 0 0 2 1 0 0 0 0 11 1 1337.782 P78527 P78527 1618 1628 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00028292 65.305 By MS/MS By matching By MS/MS By matching By matching 3 1 3 1 1 0.90129 1.0211 22.829 9 Median 0.96965 1.0553 17.154 3 0 Median 1.6185 1.5405 NaN 1 0 Median 0.94841 1.0692 3.1295 3 0 Plateau NaN NaN NaN 0 0 Median 0.62402 0.70567 NaN 1 0 Median 0.89384 0.8123 NaN 1 0 Median 96138000 49685000 46452000 24225000 12495000 11730000 3654900 1398500 2256400 63389000 33064000 30324000 0 0 0 4504900 2561300 1943600 364500 166200 198300 19045 2647 19854 99450;99451;99452;99453;99454;99455;99456;99457;99458 101076;101077;101078;101079;101080 101076 5 LATVEER FRGSLYKRYPSLWRRLATVEERKKIVASSH RYPSLWRRLATVEERKKIVASSHGKKTKPN R L A E R K 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 7 0 816.43413 G5E975;A0A0U1RQQ2;B5MCL5;A0A2R8YEE8;Q12824;A0A0G2JRV3;C9JTA6;A0A0G2JSE9;A0A0U1RRB8;A0A2R8Y5N5 Q12824 54 60 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 0.047302 41.502 By matching By matching By MS/MS 1 2 3 0.97765 0.97246 8.117 6 Median 1.0066 0.99624 NaN 1 0 Median 1.2246 1.0132 1.2459 2 0 Median 0.94956 0.94925 6.9793 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4098100 2031300 2066900 275670 150800 124870 595680 322020 273660 3226800 1558500 1668300 0 0 0 0 0 0 0 0 0 19046 1128;2761 19855 99459;99460;99461;99462;99463;99464 101081;101082 101081 2 LATVVGENGSVLR QLSSRRLRSKDSVEKLATVVGENGSVLRRV EKLATVVGENGSVLRRVTRAAAAAAAATMA K L A L R R 1 1 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1313.7303 Q9NQS7;E9PM67 Q9NQS7 110 122 INCENP Inner centromere protein yes no 2 0.0029744 67.456 By MS/MS 2 1.5078 1.5737 1.206 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5078 1.5737 1.206 2 0 Median NaN NaN NaN 0 0 Median 10082000 2696400 7385400 0 0 0 0 0 0 0 0 0 0 0 0 10082000 2696400 7385400 0 0 0 19047 4065 19856 99465;99466 101083;101084 101083 1 LATVVNDER EYLKSSDRLDEAAQRLATVVNDERFVSKAG DEAAQRLATVVNDERFVSKAGKSNYQLWHE R L A E R F 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1015.5298 Q9HCS7 Q9HCS7 200 208 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.0075294 69.825 By MS/MS By MS/MS 2 1 1.0093 0.97334 26.471 2 Median NaN NaN NaN 0 0 Median 1.3495 1.1737 NaN 1 1 Median 0.75489 0.80719 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184700 1618400 1566300 0 0 0 2006400 933300 1073100 1178200 685060 493190 0 0 0 0 0 0 0 0 0 19048 4032 19857 99467;99468;99469 101085;101086;101087 101085 3 LAVADLEK KINQQENSLTLEKLKLAVADLEKQRDCSQD LTLEKLKLAVADLEKQRDCSQDLLKKREHH K L A E K Q 2 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 857.48583 P49454 P49454 558 565 CENPF Centromere protein F yes yes 2 0.042262 36.395 By MS/MS 1 0.96785 0.91179 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96785 0.91179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 969950 522760 447190 0 0 0 0 0 0 0 0 0 969950 522760 447190 0 0 0 0 0 0 19049 2383 19858 99470 101088 101088 1 LAVAGEDAR AAVTDLAWDPFDPHRLAVAGEDARIRLWRV PFDPHRLAVAGEDARIRLWRVPAEGLEEVL R L A A R I 3 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 900.46649 A0A0A6YYL4;P57737 A0A0A6YYL4 560 568 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 0.0025104 71.501 By MS/MS By MS/MS 1 1 1.2237 1.1203 14.361 2 Median 1.0106 1.0122 NaN 1 0 Median 1.4817 1.2401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11100000 4102400 6997400 1371400 622660 748750 9728400 3479700 6248700 0 0 0 0 0 0 0 0 0 0 0 0 19050 209 19859 99471;99472 101089;101090;101091 101091 3 LAVATFAGIENK INLPAPNPDHVGGYKLAVATFAGIENKFGL GYKLAVATFAGIENKFGLYLPLFKPSVSTS K L A N K F 3 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1232.6765 Q9UJS0 Q9UJS0 642 653 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 9.9476E-05 91.584 By MS/MS By matching 1 1 0.98546 0.87837 24.655 2 Median 0.78181 0.73785 NaN 1 0 Median 1.2422 1.0457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16963000 8273300 8689300 9533600 4925700 4608000 7428900 3347600 4081400 0 0 0 0 0 0 0 0 0 0 0 0 19051 4297 19860 99473;99474 101092 101092 1 LAVDEEENADNNTK LARQVDGDNSHVEMKLAVDEEENADNNTKA KLAVDEEENADNNTKANVTKPKRCSGSICY K L A T K A 2 0 3 2 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 14 0 1560.6904 P02786;F8WBE5 P02786 40 53 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 4.5077E-33 215.87 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1.2787 1.1539 24.58 9 Median 1.2787 1.2391 25.789 3 0 Median 1.1467 1.0042 19.922 4 0 Median 1.342 1.4167 NaN 1 0 Median 0.99677 0.86655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39377000 17068000 22308000 23765000 9942500 13822000 13082000 6019000 7062700 1769500 737730 1031700 760520 369160 391360 0 0 0 0 0 0 19052 1836 19861 99475;99476;99477;99478;99479;99480;99481;99482;99483 101093;101094;101095;101096;101097;101098;101099;101100;101101;101102;101103;101104;101105 101101 13 LAVDTFPAR QCGVTSPSSAEATGKLAVDTFPARVIKHRA AEATGKLAVDTFPARVIKHRAAFLEAKGQG K L A A R V 2 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 9 0 988.53418 Q9HC52 Q9HC52 275 283 CBX8 Chromobox protein homolog 8 yes yes 2 0.00077011 98.997 By MS/MS By matching 1 1 0.93742 0.96495 46.913 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70057 0.69253 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2543 1.3445 NaN 1 0 Median NaN NaN NaN 0 0 Median 11476000 6262200 5214200 0 0 0 0 0 0 9769100 5634100 4135000 0 0 0 1707300 628060 1079200 0 0 0 19053 4026 19862 99484;99485 101106;101107 101106 2 LAVEALSSLDGDLAGR LPPHCSRGERRAIEKLAVEALSSLDGDLAG AVEALSSLDGDLAGRYYALKSMTEAEQQQL K L A G R Y 3 1 0 2 0 0 1 2 0 0 4 0 0 0 0 2 0 0 0 1 0 0 16 0 1585.8312 P12277;G3V4N7 P12277 157 172 CKB Creatine kinase B-type yes no 2;3 1.1503E-19 184.03 By MS/MS By MS/MS By MS/MS By matching 4 11 3 2 0.97934 0.93021 15.964 19 Median 0.83823 0.81534 10.215 4 0 Median 1.1866 1.0285 13.768 10 4 Median 0.84105 0.92328 9.4166 3 1 Plateau 0.89583 0.77864 26.446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 407830000 201530000 206300000 59558000 31756000 27802000 290760000 140220000 150550000 56192000 28952000 27240000 1318800 604100 714690 0 0 0 0 0 0 19054 1980 19863 99486;99487;99488;99489;99490;99491;99492;99493;99494;99495;99496;99497;99498;99499;99500;99501;99502;99503;99504;99505 101108;101109;101110;101111;101112;101113;101114;101115;101116;101117;101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130;101131;101132;101133;101134;101135;101136;101137;101138;101139;101140;101141 101129 34 LAVEAVLR LSSKLLTHHKDHFTKLAVEAVLRLKGSGNL HKDHFTKLAVEAVLRLKGSGNLEAIHIIKK K L A L R L 2 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 P78371;F5GWF6;F8VQ14 P78371 182 189 CCT2 T-complex protein 1 subunit beta yes no 2 0.0024024 138.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1.1856 1.0492 26.374 10 Median 1.195 1.1169 17.205 3 0 Plateau 1.1856 1.01 9.2717 4 0 Median 1.2183 1.2099 NaN 1 0 Median 1.137 0.97288 NaN 1 0 Median 2.2124 2.2118 NaN 1 1 Median NaN NaN NaN 0 0 Median 194410000 85472000 108930000 107570000 47844000 59727000 41888000 18746000 23142000 22300000 9768700 12531000 12863000 5982500 6880400 9785500 3131600 6653800 0 0 0 19055 2644 19864 99506;99507;99508;99509;99510;99511;99512;99513;99514;99515 101142;101143;101144;101145;101146;101147;101148;101149;101150;101151;101152;101153 101143 12 LAVEILNK GEGRSKKEAKNAAAKLAVEILNKEKKAVSP AKNAAAKLAVEILNKEKKAVSPLLLTTTNS K L A N K E 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 P19525;F8WBH4;C9JZT2 P19525 70 77 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 2 0.0064162 71.342 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 3 3 4 2 3 1.2034 1.0624 14.694 17 Median 1.0104 0.97105 8.2338 2 0 Median 1.3105 1.0772 1.941 3 0 Plateau 1.0963 1.1117 13.506 3 0 Median 1.32 1.1119 17.774 4 0 Median 0.99224 0.98716 33.241 2 0 Median 1.2034 0.99936 7.5011 3 0 Plateau 47063000 22245000 24818000 11435000 5971700 5463400 7410000 3629300 3780700 14459000 6744800 7714300 7779800 3176900 4602900 2032900 907690 1125200 3946200 1814200 2131900 19056 2067 19865 99516;99517;99518;99519;99520;99521;99522;99523;99524;99525;99526;99527;99528;99529;99530;99531;99532 101154;101155;101156;101157;101158;101159;101160 101154 7 LAVGNIKPESLSEIR DDELKEVQPLVNEAKLAVGNIKPESLSEIR LAVGNIKPESLSEIRSLRMPPDVIRDILEG K L A I R S 1 1 1 0 0 0 2 1 0 2 2 1 0 0 1 2 0 0 0 1 0 0 15 1 1624.9148 Q8NCM8 Q8NCM8 2990 3004 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2;3 1.8874E-08 118.4 By MS/MS By matching 2 1 0.71492 0.745 26.151 3 Median 0.60834 0.63236 23.182 2 0 Median NaN NaN NaN 0 0 Median 0.77883 0.89998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26924000 15561000 11363000 24868000 14561000 10307000 0 0 0 2055900 1000200 1055700 0 0 0 0 0 0 0 0 0 19057 3418 19866 99533;99534;99535 101161;101162 101162 2 LAVHPSGVALQDR AQITQKIGVHAFQQRLAVHPSGVALQDRVP QRLAVHPSGVALQDRVPLASQGLGPGSTVL R L A D R V 2 1 0 1 0 1 0 1 1 0 2 0 0 0 1 1 0 0 0 2 0 0 13 0 1361.7415 A0A096LNZ9;A0A096LPJ4;P05161 A0A096LNZ9 37 49 ISG15 Ubiquitin-like protein ISG15 yes no 3 5.3677E-06 94.538 By MS/MS 1 1.1144 0.94637 NaN 1 Median NaN NaN NaN 0 0 Median 1.1144 0.94637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7533000 3759400 3773600 0 0 0 7533000 3759400 3773600 0 0 0 0 0 0 0 0 0 0 0 0 19058 141 19867 99536 101163;101164 101164 2 LAVIASHIQESR MVLGNSHLFMNRSNKLAVIASHIQESRFLY SNKLAVIASHIQESRFLYPGKNGRLGDFFG K L A S R F 2 1 0 0 0 1 1 0 1 2 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1322.7306 F5H6X0;F5GXG6;F5GX35;F5H4K7;F5GWD3;Q13889 F5H6X0 16 27 GTF2H3 General transcription factor IIH subunit 3 yes no 2;3 7.8881E-05 93.058 By matching By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1.2947 1.2038 18.34 9 Median 1.2215 1.1768 18.629 2 0 Median 1.3597 1.1488 6.6153 2 0 Median 0.86421 0.84099 5.3519 2 0 Median 1.4995 1.2508 4.7941 2 0 Median 1.2216 1.3325 NaN 1 0 Median NaN NaN NaN 0 0 Median 55803000 25926000 29876000 5403800 2159200 3244600 3120500 1498900 1621600 35604000 17947000 17657000 10707000 3896600 6810700 966780 424810 541980 0 0 0 19059 996 19868 99537;99538;99539;99540;99541;99542;99543;99544;99545 101165;101166;101167;101168;101169;101170;101171 101171 7 LAVIQEAR SPAPLEPEPGAAQPKLAVIQEARFAQSAPG PGAAQPKLAVIQEARFAQSAPGSPLSSQPV K L A A R F 2 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 898.52362 Q01167 Q01167 413 420 FOXK2 Forkhead box protein K2 yes yes 2 0.0041552 83.206 By matching By MS/MS 1 2 1.2458 1.1358 5.8258 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1518 1.1935 NaN 1 0 Median 1.25 1.079 0.24126 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9715500 4642100 5073400 0 0 0 0 0 0 6119500 3105100 3014500 3596000 1537100 2058900 0 0 0 0 0 0 19060 2684 19869 99546;99547;99548 101172 101172 1 LAVISNFDR GAEDTLRECRTRGLRLAVISNFDRRLEGIL RTRGLRLAVISNFDRRLEGILGGLGLREHF R L A D R R 1 1 1 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1033.5556 Q9BSH5 Q9BSH5 131 139 HDHD3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 yes yes 2 0.049787 31.074 By matching By MS/MS 1 1 1.2617 1.1328 35.301 2 Median 0.93022 0.8826 NaN 1 0 Median 1.7112 1.454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15237000 7240300 7996800 13608000 6673600 6934500 1629200 566800 1062400 0 0 0 0 0 0 0 0 0 0 0 0 19061 3814 19870 99549;99550 101173 101173 1 LAVLITNSNVR CRSLETSLVPLSDPKLAVLITNSNVRHSLA SDPKLAVLITNSNVRHSLASSEYPVRRRQC K L A V R H 1 1 2 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 2 0 0 11 0 1198.7034 P51570 P51570 218 228 GALK1 Galactokinase yes yes 2 9.4189E-07 166.16 By MS/MS By MS/MS By matching 1 1 1 1.4305 1.2422 29.688 3 Median 1.0406 1.0445 NaN 1 0 Median 1.4305 1.2422 NaN 1 0 Median 1.7079 1.8627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68113000 32290000 35822000 51392000 25219000 26174000 4641300 1923400 2717900 12079000 5147900 6931000 0 0 0 0 0 0 0 0 0 19062 2434 19871 99551;99552;99553 101174;101175;101176;101177 101175 4 LAVLKEENDKK METRQQMSAELWKERLAVLKEENDKKRAEK WKERLAVLKEENDKKRAEKQKRKEMEAKNK R L A K K R 1 0 1 1 0 0 2 0 0 0 2 3 0 0 0 0 0 0 0 1 0 0 11 2 1285.7242 Q9UIG0 Q9UIG0 781 791 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.012518 50.04 By matching By MS/MS By matching 1 3 2 0.8443 0.96452 12.752 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7969 0.92328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82453 0.96384 1.9436 3 0 Median 1.1312 1.1974 7.5798 2 0 Median 8872300 4704700 4167500 0 0 0 0 0 0 494100 277390 216710 0 0 0 7464400 4035200 3429200 913740 392130 521610 19063 4290 19872 99554;99555;99556;99557;99558;99559 101178;101179;101180 101179 3 LAVLPYELR REVVTEIRDKATRRRLAVLPYELRFKEPLP KATRRRLAVLPYELRFKEPLPEYVRLG___ R L A L R F 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 9 0 1072.6281 H3BUR4;Q9ULX3 H3BUR4 46 54 NOB1 RNA-binding protein NOB1 yes no 2 0.006571 54.157 By matching By MS/MS By matching 1 2 1 0.89039 0.77116 8.991 4 Median NaN NaN NaN 0 0 Median 0.95237 0.79046 NaN 1 0 Median 0.80144 0.77845 15.146 2 0 Median 0.90985 0.75233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9166000 4483600 4682300 0 0 0 2303300 1007400 1295900 5463300 2787900 2675400 1399400 688320 711040 0 0 0 0 0 0 19064 1238 19873 99560;99561;99562;99563 101181;101182 101182 2 LAVLSSSLTHWK EQHEYMDRARQYSTRLAVLSSSLTHWKKLP STRLAVLSSSLTHWKKLPPLPSLTSQPHQV R L A W K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 3 1 1 0 1 0 0 12 0 1340.7452 Q6IAA8;F5GX19;F5H3Y3 Q6IAA8 92 103 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 2;3 0.00015939 73.435 By MS/MS By matching By MS/MS By matching 3 3 3 1 1.2895 1.3527 40.77 10 Median 1.1468 1.0822 35.186 3 0 Plateau 2.0371 1.7261 24.937 3 0 Median 1.4498 1.4465 13.099 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0551 0.88876 NaN 1 0 Median 30679000 12839000 17840000 15521000 6864000 8656800 3321500 941990 2379500 11592000 4901200 6691200 0 0 0 0 0 0 244350 132230 112120 19065 3137 19874 99564;99565;99566;99567;99568;99569;99570;99571;99572;99573 101183;101184 101183 2 LAVMSMEMR TSELVMLSLELVKTRLAVMSMEMRKNFIQA ELVKTRLAVMSMEMRKNFIQAILTSLIEKS R L A M R K 1 1 0 0 0 0 1 0 0 0 1 0 3 0 0 1 0 0 0 1 0 0 9 0 1066.4973 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2317 2325 TRRAP Transformation/transcription domain-associated protein yes no 2 0.029023 71.379 By matching By MS/MS By matching 1 1 1 1.0628 0.94734 3.2094 3 Median NaN NaN NaN 0 0 Median 1.0628 0.90536 NaN 1 0 Median 0.91165 0.96329 NaN 1 0 Median 1.0911 0.94734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10725000 5531500 5193300 0 0 0 1123900 562050 561850 9159700 4764600 4395100 441300 204920 236390 0 0 0 0 0 0 19066 991 19875 99574;99575;99576 101185 101185 0 LAVNMVPFPR TCLRFPGQLNADLRKLAVNMVPFPRLHFFM ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG K L A P R L 1 1 1 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 2 0 0 10 0 1142.627 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 253 262 TUBB3;TUBB4A;TUBB;TUBB8;TUBB1;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2 8.2828E-41 219.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 6 6 9 11 8 1.0131 0.85333 38.896 51 Median 0.82122 0.75466 11.612 11 2 Median 0.89438 0.74752 70.582 6 3 Median 0.86098 0.84602 60.118 6 0 Median 1.0304 0.87892 10.964 9 0 Median 1.387 1.381 12.418 11 1 Median 1.025 0.83998 7.0582 8 0 Median 2720400000 1426200000 1294200000 1279600000 694590000 585020000 810190000 430410000 379770000 183840000 98079000 85759000 176690000 85012000 91680000 169280000 67859000 101420000 100760000 50235000 50523000 19067 2634;1887;3849;2844;1849;3838;216 19876;19877 99577;99578;99579;99580;99581;99582;99583;99584;99585;99586;99587;99588;99589;99590;99591;99592;99593;99594;99595;99596;99597;99598;99599;99600;99601;99602;99603;99604;99605;99606;99607;99608;99609;99610;99611;99612;99613;99614;99615;99616;99617;99618;99619;99620;99621;99622;99623;99624;99625;99626;99627 101186;101187;101188;101189;101190;101191;101192;101193;101194;101195;101196;101197;101198;101199;101200;101201;101202;101203;101204;101205;101206;101207;101208;101209;101210;101211;101212;101213;101214;101215;101216;101217;101218;101219;101220;101221;101222;101223;101224;101225;101226;101227;101228;101229;101230;101231;101232;101233;101234;101235;101236;101237;101238;101239;101240;101241;101242;101243;101244;101245;101246;101247;101248;101249;101250;101251;101252;101253;101254;101255;101256;101257;101258;101259;101260;101261;101262;101263;101264;101265;101266;101267;101268 101228 90 83 LAVPIILR SMARFTYEYSRRHTKLAVPIILRVAKGYQE YSRRHTKLAVPIILRVAKGYQELLEKCSQS K L A L R V 1 1 0 0 0 0 0 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 8 0 893.60622 CON__Q3SZ57 CON__Q3SZ57 366 373 yes yes 2 0.030346 59.641 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7376900 7376900 0 7376900 7376900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 19068 778 19878 99628 101269 101269 1 LAVQFTNR AGLCPAACMQTPRMKLAVQFTNRNQYCYGS MQTPRMKLAVQFTNRNQYCYGSRDLLGLHN K L A N R N 1 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 947.51886 Q7L8L6 Q7L8L6 697 704 FASTKD5 FAST kinase domain-containing protein 5 yes yes 2 0.0061436 72.485 By MS/MS 1 1.7114 1.4851 NaN 1 Median NaN NaN NaN 0 0 Median 1.7114 1.4851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3081200 1182400 1898800 0 0 0 3081200 1182400 1898800 0 0 0 0 0 0 0 0 0 0 0 0 19069 3228 19879 99629 101270 101270 1 LAVQNSSLHDIQHAPK VLTPQHPEFKTTAEKLAVQNSSLHDIQHAP AVQNSSLHDIQHAPKLSALKQLLLDCGLGN K L A P K L 2 0 1 1 0 2 0 0 2 1 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1756.922 A0A0A0MTH9;O14981 A0A0A0MTH9 1600 1615 BTAF1 TATA-binding protein-associated factor 172 yes no 4 0.000522 37.657 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.66314 0.69869 15.649 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61614 0.68178 NaN 1 0 Median 0.89335 0.80799 NaN 1 0 Median 0.68044 0.71602 NaN 1 0 Median 0.64627 0.55508 NaN 1 0 Median 13875000 7997300 5877400 0 0 0 0 0 0 9174600 5386300 3788300 2486400 1425800 1060600 1406300 771940 634320 807410 413270 394130 19070 191 19880 99630;99631;99632;99633 101271;101272;101273;101274 101271 4 LAVQQVEEAQQLR IKFQSPYEEQLEQQRLAVQQVEEAQQLREH QRLAVQQVEEAQQLREHQEALHQQRLQGHL R L A L R E 2 1 0 0 0 4 2 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1510.8104 O00461;F8W785 O00461 416 428 GOLIM4 Golgi integral membrane protein 4 yes no 2 1.0783E-10 179.8 By MS/MS By matching By matching 1 1 1 1.1239 1.0826 9.7712 3 Median 1.1239 1.0826 NaN 1 0 Median 1.3702 1.1581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1135 0.95524 NaN 1 0 Median 21410000 9941100 11469000 12807000 5984100 6822800 4635400 1887900 2747500 0 0 0 0 0 0 0 0 0 3967800 2069100 1898700 19071 1466 19881 99634;99635;99636 101275;101276 101275 2 LAVSHVIHK FTSDAGFSGITDDHKLAVSHVIHKAVLDVG ITDDHKLAVSHVIHKAVLDVGEEGTEGAAV K L A H K A 1 0 0 0 0 0 0 0 2 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 1002.5974 CON__A2I7N3 CON__A2I7N3 348 356 yes yes 2 0.010846 63.48 By MS/MS 2 0.25816 0.22587 NaN 1 Median NaN NaN NaN 0 0 Median 0.25816 0.22587 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1990000 1803900 186050 0 0 0 1990000 1803900 186050 0 0 0 0 0 0 0 0 0 0 0 0 + 19072 733 19882 99637;99638 101277;101278 101278 2 LAVSSLLR PLSLKYSCPSESTWKLAVSSLLRVLSIGLP PSESTWKLAVSSLLRVLSIGLPVARQHASS K L A L R V 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 8 0 857.53345 A0A286YFF8;Q7Z3U7 A0A286YFF8 1462 1469 MON2 Protein MON2 homolog yes no 2 0.008272 63.565 By MS/MS By matching 1 2 1.0599 1.0201 20.806 3 Median 1.0599 1.0201 NaN 1 0 Median 1.2153 1.0405 29.38 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6334300 3089200 3245000 4334100 2138200 2195900 2000100 951000 1049100 0 0 0 0 0 0 0 0 0 0 0 0 19073 353 19883 99639;99640;99641 101279;101280 101279 2 LAVVDEWR SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW EVSVSDKLAVVDEWRKEMGLCWKEVAYLGN K L A W R K 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 8 0 986.51853 Q8NFW8 Q8NFW8 351 358 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.0059586 73.26 By MS/MS 1 0.94279 0.92879 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94279 0.92879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12767000 6521600 6245500 0 0 0 0 0 0 12767000 6521600 6245500 0 0 0 0 0 0 0 0 0 19074 3441 19884 99642 101281 101281 1 LAVVDEWRK SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW VSVSDKLAVVDEWRKEMGLCWKEVAYLGNE K L A R K E 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 2 0 0 9 1 1114.6135 Q8NFW8 Q8NFW8 351 359 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.012355 58.981 By MS/MS 1 1.4335 1.3688 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4335 1.3688 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17607000 6420800 11186000 0 0 0 0 0 0 0 0 0 17607000 6420800 11186000 0 0 0 0 0 0 19075 3441 19885 99643 101282 101282 1 LAVVDPLFGMQPIR ENVNGYTNCCFGFHRLAVVDPLFGMQPIRV RLAVVDPLFGMQPIRVKKYPYLWLCYNGEI R L A I R V 1 1 0 1 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 2 0 0 14 0 1554.8592 P08243;F8WEJ5;C9J057;C9JM09;C9JT45;C9JLN6 P08243 50 63 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.030038 62.463 By MS/MS By matching 1 1 0.99773 0.9462 43.542 2 Median NaN NaN NaN 0 0 Median 0.80252 0.69545 NaN 1 0 Median 1.2404 1.2873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5062600 2344500 2718100 0 0 0 4387000 2011900 2375200 675570 332640 342930 0 0 0 0 0 0 0 0 0 19076 1901 19886 99644;99645 101283 101283 0 LAVYIDK SRLQEKEELRELNDRLAVYIDKVRSLETEN ELRELNDRLAVYIDKVRSLETENSALQLQV R L A D K V 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 820.46945 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 43 49 LMNB1 Lamin-B1 yes no 2 0.014701 73.637 By MS/MS By MS/MS By MS/MS 2 7 7 1.1025 1.1195 20.647 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90414 0.87689 39.069 2 0 Median NaN NaN NaN 0 0 Median 0.97173 0.97256 9.3715 7 0 Median 1.6076 1.3062 4.9087 7 0 Median 259930000 123320000 136620000 0 0 0 0 0 0 57686000 27876000 29809000 0 0 0 138080000 70911000 67173000 64165000 24530000 39635000 19077 2084 19887 99646;99647;99648;99649;99650;99651;99652;99653;99654;99655;99656;99657;99658;99659;99660;99661 101284;101285;101286;101287;101288;101289;101290;101291;101292;101293;101294;101295;101296;101297;101298;101299;101300;101301;101302 101289 19 LAVYIDKVR SRLQEKEELRELNDRLAVYIDKVRSLETEN RELNDRLAVYIDKVRSLETENSALQLQVTE R L A V R S 1 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 2 0 0 9 1 1075.639 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 43 51 LMNB1 Lamin-B1 yes no 2 0.000282 151.27 By MS/MS By MS/MS 6 3 1.0043 1.0612 16.223 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91867 1.0207 16.154 6 0 Median 1.3921 1.208 7.4895 3 0 Median 112830000 58094000 54738000 0 0 0 0 0 0 0 0 0 0 0 0 96482000 51208000 45274000 16351000 6886300 9464400 19078 2084 19888 99662;99663;99664;99665;99666;99667;99668;99669;99670 101303;101304;101305;101306;101307;101308;101309;101310;101311;101312;101313;101314;101315 101304 12 LAVYIDR TRLQEKEDLQELNDRLAVYIDRVRSLETEN DLQELNDRLAVYIDRVRSLETENAGLRLRI R L A D R V 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.4756 P02545;Q3BDU5 P02545 42 48 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0017105 110.61 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 7 5 1.2454 1.1683 36.354 21 Median NaN NaN NaN 0 0 Median 1.1847 1.0344 NaN 1 0 Median 1.0099 1.0148 37.651 4 0 Median 1.3652 1.1734 54.877 5 1 Median 1.2076 1.2081 27.904 6 0 Median 1.4625 1.0925 24.209 5 1 Median 668520000 291900000 376610000 0 0 0 1146300 475170 671140 163080000 72485000 90595000 57601000 28591000 29011000 272840000 123520000 149320000 173850000 66828000 107020000 19079 1834;3010 19889 99671;99672;99673;99674;99675;99676;99677;99678;99679;99680;99681;99682;99683;99684;99685;99686;99687;99688;99689;99690;99691;99692 101316;101317;101318;101319;101320;101321;101322;101323;101324;101325;101326;101327;101328;101329;101330;101331;101332;101333;101334;101335 101316 20 LAVYQAGASEGAER LPKRLLRDADDLKKRLAVYQAGASEGAERS RLAVYQAGASEGAERSLSAIRERFGPLVEQ R L A E R S 4 1 0 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 14 0 1420.6947 CON__Q03247 CON__Q03247 176 189 yes yes 2 1.2796E-14 133.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 3 6 0.092446 0.074883 85.344 12 Median NaN NaN NaN 0 0 Median 0.1633 0.13608 NaN 1 1 Median 0.16792 0.16121 19.538 2 2 Median 0.079509 0.06615 56.306 3 3 Median 0.015534 0.015474 NaN 1 1 Median 0.086238 0.06721 86.399 5 5 Median 220260000 210220000 10037000 0 0 0 5189400 4637300 552120 15344000 13315000 2029000 58059000 55097000 2961100 88845000 87381000 1463600 52825000 49794000 3031300 + 19080 767 19890 99693;99694;99695;99696;99697;99698;99699;99700;99701;99702;99703;99704;99705;99706;99707;99708 101336;101337;101338;101339;101340;101341;101342;101343;101344;101345;101346;101347;101348;101349;101350;101351;101352 101336 17 LAWALALR DSQLWKLPGLQATVRLAWALALRGISQLPD GLQATVRLAWALALRGISQLPDVTALAEFT R L A L R G 3 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 912.55452 Q92621 Q92621 331 338 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.008475 62.714 By matching By MS/MS By MS/MS By matching 4 3 1 1 1.0618 1.102 22.727 9 Median 0.95241 0.93193 28.369 4 0 Median NaN NaN NaN 0 0 Median 0.99929 1.0296 12.537 3 0 Median 1.4113 1.2348 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4798 1.2858 NaN 1 0 Median 16910000 7795200 9114400 6784100 2976800 3807300 0 0 0 9193400 4434200 4759200 455840 200400 255430 0 0 0 476250 183740 292510 19081 3547 19891 99709;99710;99711;99712;99713;99714;99715;99716;99717 101353;101354;101355 101354 3 LAWEQQEPGER SYNPPPEYLLSEEERLAWEQQEPGERKLSF EEERLAWEQQEPGERKLSFLPRKFPSLRAV R L A E R K 1 1 0 0 0 2 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1341.6313 Q14137 Q14137 328 338 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.00019225 107.57 By matching By MS/MS By MS/MS 1 1 3 1.0248 0.88084 31.648 5 Median NaN NaN NaN 0 0 Median 1.1033 0.96906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85206 0.8565 NaN 1 0 Median 1.0248 0.88084 40.505 3 0 Median 37951000 20051000 17900000 0 0 0 1512800 704000 808770 0 0 0 0 0 0 26866000 14234000 12633000 9571800 5113600 4458200 19082 2856 19892 99718;99719;99720;99721;99722 101356;101357;101358;101359 101357 4 LAWVGDVFTATPAEPRPLTSPLR PAMLRERGTPPVDPKLAWVGDVFTATPAEP TATPAEPRPLTSPLRQAADEDDKGMRSETP K L A L R Q 3 2 0 1 0 0 1 1 0 0 3 0 0 1 4 1 3 1 0 2 0 0 23 1 2493.338 P48634 P48634 789 811 PRRC2A Protein PRRC2A yes yes 3 0.0078556 21.865 By MS/MS 1 0.43827 0.46869 NaN 1 Median 0.43827 0.46869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3071000 1874400 1196600 3071000 1874400 1196600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19083 2363 19893 99723 101360;101361 101361 2 LAWVSHDSTVSVADASK GGWVHGVSFSASGSRLAWVSHDSTVSVADA WVSHDSTVSVADASKSVQVSTLKTEFLPLL R L A S K S 3 0 0 2 0 0 0 0 1 0 1 1 0 0 0 4 1 1 0 3 0 0 17 0 1771.8741 A0A1W2PNV4;E9PF58;Q92747 Q92747 219 235 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 2;3 1.4447E-14 163.09 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.4044 1.211 13.404 5 Median 1.4071 1.3051 22.704 2 0 Median 1.4044 1.211 NaN 1 0 Median 1.069 1.1041 NaN 1 0 Median 1.5122 1.2811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54206000 23521000 30686000 30861000 12614000 18247000 2587800 1083300 1504500 17368000 8414400 8953100 3389900 1409400 1980500 0 0 0 0 0 0 19084 334;3552 19894 99724;99725;99726;99727;99728 101362;101363;101364;101365;101366;101367 101364 6 LAYAIIQFLHDQLR ______________________________ RLAYAIIQFLHDQLRHGGLSSDAQESLEVA R L A L R H 2 1 0 1 0 2 0 0 1 2 3 0 0 1 0 0 0 0 1 0 0 0 14 0 1699.941 O43765;K7EMD6;K7ERW5 O43765 7 20 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes no 2 2.9186E-44 179.57 By MS/MS 2 1.1891 0.98904 10.311 2 Median NaN NaN NaN 0 0 Median 1.1891 0.98904 10.311 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21673000 9348500 12324000 0 0 0 21673000 9348500 12324000 0 0 0 0 0 0 0 0 0 0 0 0 19085 1588 19895 99729;99730 101368;101369 101369 2 LAYCQSEELRR YEPRRRDHISHFILRLAYCQSEELRRWFIQ FILRLAYCQSEELRRWFIQQEMDLLRFRFS R L A R R W 1 2 0 0 1 1 2 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 11 1 1423.6878 P49643 P49643 108 118 PRIM2 DNA primase large subunit yes yes 3 0.039948 22.232 By MS/MS 1 1.1161 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median 1.1161 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1481400 645180 836260 0 0 0 1481400 645180 836260 0 0 0 0 0 0 0 0 0 0 0 0 19086 2389 19896 99731 101370 101370 0 LAYELYTEALGIDPNNIK KKEDGNKAFKEGNYKLAYELYTEALGIDPN ELYTEALGIDPNNIKTNAKLYCNRGTVNSK K L A I K T 2 0 2 1 0 0 2 1 0 2 3 1 0 0 1 0 1 0 2 0 0 0 18 0 2036.0466 Q99615;K7ESP1;K7EPP7;K7EJ24 Q99615 274 291 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2;3 0.0029732 31.639 By matching By MS/MS By MS/MS By matching 2 2 2 1 0.93853 0.87676 15.893 7 Median 0.96835 0.93632 4.7672 2 0 Median 1.025 0.89445 2.8258 2 0 Median 0.65364 0.66057 3.8515 2 0 Median NaN NaN NaN 0 0 Median 0.89826 0.87282 NaN 1 0 Median NaN NaN NaN 0 0 Median 7491500 3773700 3717800 3307600 1529200 1778400 1942900 992410 950490 2013100 1141900 871200 0 0 0 227950 110220 117730 0 0 0 19087 3759 19897 99732;99733;99734;99735;99736;99737;99738 101371;101372;101373 101373 3 LAYIAHPK VKPKIPKGVSRKLDRLAYIAHPKLGKRARA VSRKLDRLAYIAHPKLGKRARARIAKGLRL R L A P K L 2 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 911.52289 A0A3B3ITT5;P47914 A0A3B3ITT5 104 111 RPL29 60S ribosomal protein L29 yes no 2 0.0060114 73.039 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 0.85193 0.83086 19.135 7 Median 0.75427 0.71156 NaN 1 0 Median 0.85193 0.71465 NaN 1 1 Median 0.80143 0.75114 NaN 1 1 Median 1.2153 1.0079 NaN 1 0 Median 0.88951 0.98661 24.297 2 0 Median 1.1635 0.94717 NaN 1 0 Median 33538000 17957000 15581000 283260 154840 128420 7044800 3552900 3491900 12941000 7490600 5450800 369210 142170 227040 12662000 6531100 6130800 237330 85741 151590 19088 438 19898 99739;99740;99741;99742;99743;99744;99745 101374;101375;101376;101377 101375 4 LAYINPDLALEEK KKCQQAEKILKEQERLAYINPDLALEEKNK ERLAYINPDLALEEKNKGNECFQKGDYPQA R L A E K N 2 0 1 1 0 0 2 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1487.7872 P31948 P31948 352 364 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 4.4657E-05 89.548 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 0.87998 0.75199 30.992 9 Median 0.75743 0.71851 47.213 4 0 Median 0.88427 0.73894 2.4773 2 0 Median 0.86891 0.85958 9.2468 2 0 Median 0.87998 0.74692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 461070000 224620000 236450000 216760000 103770000 112990000 204550000 102060000 102490000 32707000 15424000 17283000 7050000 3369000 3681000 0 0 0 0 0 0 19089 2212 19899 99746;99747;99748;99749;99750;99751;99752;99753;99754 101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389;101390;101391 101381 14 LAYLQILSEETSVK GTGSTKQEAKQLAAKLAYLQILSEETSVKS KLAYLQILSEETSVKSDYLSSGSFATTCES K L A V K S 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 2 1 0 1 1 0 0 14 0 1592.8661 P19525 P19525 160 173 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00066409 69.01 By MS/MS By MS/MS 1 1 1.1889 1.0176 NaN 1 Median NaN NaN NaN 0 0 Median 1.1889 1.0176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3764700 1677100 2087600 0 0 0 3764700 1677100 2087600 0 0 0 0 0 0 0 0 0 0 0 0 19090 2067 19900 99755;99756 101392;101393 101393 2 LAYMELQQK HNVLDSKSVEVETQKLAYMELQQKAEFSDQ EVETQKLAYMELQQKAEFSDQKHQKEIENM K L A Q K A 1 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 9 0 1122.5743 P49454 P49454 698 706 CENPF Centromere protein F yes yes 2 0.0037586 80.229 By MS/MS 1 1.0781 1.1528 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0781 1.1528 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10921000 5214400 5706200 0 0 0 0 0 0 10921000 5214400 5706200 0 0 0 0 0 0 0 0 0 19091 2383 19901 99757 101394 101394 1 LAYQELQIDR DAKKQAEESMVASMRLAYQELQIDRKKEEK VASMRLAYQELQIDRKKEEKKLQNLEGKKR R L A D R K 1 1 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 10 0 1247.651 E9PQP3;A0A0D9SF70;G5E9L0;Q8N6H7;E9PIY6;H0YDN9 E9PQP3 140 149 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 2 0.04531 29.473 By matching By matching By matching By MS/MS 1 1 1 2 0.95834 0.83946 56.763 5 Median 0.26949 0.25166 NaN 1 0 Median 1.0625 0.89218 NaN 1 0 Median 0.83353 0.83946 NaN 1 0 Median 1.0391 0.90951 12.03 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11108000 7409700 3698600 5518000 4533100 984850 390640 205640 185000 2939900 1490600 1449300 2259800 1180300 1079500 0 0 0 0 0 0 19092 266 19902 99758;99759;99760;99761;99762 101395 101395 1 LAYVAPTIPR SLDNKEKEKDSKGTRLAYVAPTIPRRLAST SKGTRLAYVAPTIPRRLASTSDIEEKENRD R L A P R R 2 1 0 0 0 0 0 0 0 1 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1099.639 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 494 503 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 0.00043466 99.136 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74474 0.71418 16.256 4 Median 0.80974 0.78227 NaN 1 0 Median 0.66082 0.56524 NaN 1 0 Median 0.72425 0.79643 NaN 1 0 Median 0.7658 0.65201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20809000 12273000 8535500 6603700 3998500 2605200 2379800 1525100 854700 9593700 5495500 4098200 2231700 1254300 977370 0 0 0 0 0 0 19093 1508 19903 99763;99764;99765;99766 101396;101397;101398;101399;101400 101397 5 LAYYYQR FVGLQGSGKTTTCSKLAYYYQRKGWKTCLI GKTTTCSKLAYYYQRKGWKTCLICADTFRA K L A Q R K 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 0 7 0 975.48142 G3V4F7;P61011 G3V4F7 57 63 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.015382 85.306 By MS/MS 1 1.1938 1.1909 NaN 1 Median 1.1938 1.1909 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3413400 1628200 1785200 3413400 1628200 1785200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19094 1116 19904 99767 101401 101401 1 LCAAAASILGK TNLPANRVPAGLEKRLCAAAASILGKPADR LEKRLCAAAASILGKPADRVNVTVRPGLAM R L C G K P 4 0 0 0 1 0 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1073.5903 P30046;J3KQ18;B5MC82;A6NHG4 P30046 23 33 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2 0.00082039 81.95 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19095 2182 19905 99768 101402 101402 1 LCAAAASILGKPADR TNLPANRVPAGLEKRLCAAAASILGKPADR LCAAAASILGKPADRVNVTVRPGLAMALSG R L C D R V 5 1 0 1 1 0 0 1 0 1 2 1 0 0 1 1 0 0 0 0 0 0 15 1 1512.8082 P30046;J3KQ18;B5MC82;A6NHG4 P30046 23 37 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2;3 2.5001E-08 129.84 By MS/MS By MS/MS By MS/MS 2 2 1 1.0061 0.98657 27.839 5 Median 0.92276 0.90485 12.228 2 0 Median 1.1806 1.0423 2.8524 2 0 Median 0.51889 0.54078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136810000 63823000 72988000 6595000 3313500 3281500 126660000 58597000 68067000 3551900 1911700 1640300 0 0 0 0 0 0 0 0 0 19096 2182 19906 99769;99770;99771;99772;99773 101403;101404;101405;101406;101407;101408;101409 101409 7 LCDEQLSSQSHYDFGLR RTAEVLANKIVPFFKLCDEQLSSQSHYDFG DEQLSSQSHYDFGLRALKSVLVSAGNVKRE K L C L R A 0 1 0 2 1 2 1 1 1 0 3 0 0 1 0 3 0 0 1 0 0 0 17 0 2053.9164 Q14204;A0A2R8YFZ7 Q14204 2075 2091 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 7.9754E-12 92.38 By MS/MS By MS/MS 1 1 0.87612 0.80405 15.302 2 Median NaN NaN NaN 0 0 Median 0.90185 0.7216 NaN 1 0 Median 0.85113 0.89593 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37378000 19916000 17462000 0 0 0 22398000 12121000 10278000 14980000 7795100 7184600 0 0 0 0 0 0 0 0 0 19097 2865 19907 99774;99775 101410;101411;101412 101410 3 LCDSYEIRPGK FITFCGKEAAQEAVKLCDSYEIRPGKHLGV EAVKLCDSYEIRPGKHLGVCISVANNRLFV K L C G K H 0 1 0 1 1 0 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 1 1336.6445 O43390;B4DT28 O43390 225 235 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 3 0.00057602 57.019 By matching By matching By MS/MS 2 1 2 0.79647 0.83278 20.379 5 Median NaN NaN NaN 0 0 Median 0.85926 0.82695 37.175 2 0 Median 0.66174 0.70272 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80499 0.85407 3.5697 2 0 Median NaN NaN NaN 0 0 Median 22701000 12185000 10515000 0 0 0 1667800 850020 817770 3002800 1524000 1478800 0 0 0 18030000 9811200 8218900 0 0 0 19098 1568 19908 99776;99777;99778;99779;99780 101413;101414 101414 2 LCEGFNEVLK IKQFLECAQNQGDIKLCEGFNEVLKQCRLA QGDIKLCEGFNEVLKQCRLANGLA______ K L C L K Q 0 0 1 0 1 0 2 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1207.5907 Q9Y6H1 Q9Y6H1 133 142 CHCHD2 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 yes yes 2 0.042746 30.254 By matching By MS/MS 1 1 1.7364 1.6394 59.614 2 Median 2.4353 2.499 NaN 1 0 Median 1.238 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8000400 2377200 5623200 6756500 1844000 4912500 1243900 533250 710630 0 0 0 0 0 0 0 0 0 0 0 0 19099 4492 19909 99781;99782 101415 101415 1 LCFSTAQHAS YQMKNPNGPYPYTLKLCFSTAQHAS_____ PYTLKLCFSTAQHAS_______________ K L C A S - 2 0 0 0 1 1 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1120.4971 A0A3B3ITJ4;M0QXS5;P14866 P14866 580 589 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.00061022 95.909 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49334000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42194000 0 0 7139900 0 0 19100 2011;436 19910 99783;99784;99785 101416;101417;101418 101417 3 LCGDTSLNNMQR YLRPHLEATLQLSLKLCGDTSLNNMQRQLA SLKLCGDTSLNNMQRQLALEVIVTLSETAA K L C Q R Q 0 1 2 1 1 1 0 1 0 0 2 0 1 0 0 1 1 0 0 0 0 0 12 0 1407.6235 O00410;H0Y8C6 O00410 265 276 IPO5 Importin-5 yes no 2 0.00067049 62.303 By MS/MS 1 0.99672 0.85246 NaN 1 Median NaN NaN NaN 0 0 Median 0.99672 0.85246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2446100 1147500 1298500 0 0 0 2446100 1147500 1298500 0 0 0 0 0 0 0 0 0 0 0 0 19101 1460 19911 99786 101419;101420 101419 2 LCLISTFLEDGIR QFLRVTKQYLPHVARLCLISTFLEDGIRMW ARLCLISTFLEDGIRMWFQWSEQRDYIDTT R L C I R M 0 1 0 1 1 0 1 1 0 2 3 0 0 1 0 1 1 0 0 0 0 0 13 0 1535.8018 Q5T8U5;O15260 Q5T8U5 31 43 SURF4 Surfeit locus protein 4 yes no 2 3.8838E-07 109.42 By MS/MS By MS/MS By matching 2 1 1 1.252 1.2103 21.574 4 Median 1.252 1.2451 6.9404 2 0 Median 1.4549 1.2357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.01 0.81285 NaN 1 0 Median 5224900 2204300 3020600 1347100 606050 741060 3604000 1466300 2137800 0 0 0 0 0 0 0 0 0 273770 132020 141750 19102 1534 19912 99787;99788;99789;99790 101421;101422;101423 101423 3 LCLQSIAFISR EHIIMKPACPLFVRRLCLQSIAFISRLAPT FVRRLCLQSIAFISRLAPTVP_________ R L C S R L 1 1 0 0 1 1 0 0 0 2 2 0 0 1 0 2 0 0 0 0 0 0 11 0 1306.7067 P57088 P57088 231 241 TMEM33 Transmembrane protein 33 yes yes 2 0.0013 59.8 By MS/MS By matching 3 1 1.2886 1.1747 11.764 4 Median NaN NaN NaN 0 0 Median 1.3633 1.1929 8.9176 3 0 Median 0.92296 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4662000 1895400 2766600 0 0 0 4221100 1694100 2527100 440850 201390 239460 0 0 0 0 0 0 0 0 0 19103 2516 19913 99791;99792;99793;99794 101424;101425 101424 2 LCLTLHNNEGSYLAHTQGK DPYFMKNHLGSYECKLCLTLHNNEGSYLAH LHNNEGSYLAHTQGKKHQTNLARRAAKEAK K L C G K K 1 0 2 0 1 1 1 2 2 0 4 1 0 0 0 1 2 0 1 0 0 0 19 0 2155.048 Q15428;K7EMT0 Q15428 58 76 SF3A2 Splicing factor 3A subunit 2 yes no 4 0.0054647 24.3 By matching By MS/MS 1 1 1.2166 1.1051 17.367 2 Median NaN NaN NaN 0 0 Median 1.4417 1.2495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0267 0.97737 NaN 1 0 Median NaN NaN NaN 0 0 Median 6733500 3269200 3464300 0 0 0 1144700 313910 830810 0 0 0 0 0 0 5588800 2955300 2633500 0 0 0 19104 2953 19914 99795;99796 101426 101426 1 LCPNSTGAEIR SMSVERDIRFELLARLCPNSTGAEIRSVCT LLARLCPNSTGAEIRSVCTEAGMFAIRARR R L C I R S 1 1 1 0 1 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1216.587 P35998 P35998 376 386 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.0020633 55.567 By MS/MS 1 0.84481 0.72268 NaN 1 Median NaN NaN NaN 0 0 Median 0.84481 0.72268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3000000 1533100 1466900 0 0 0 3000000 1533100 1466900 0 0 0 0 0 0 0 0 0 0 0 0 19105 2253 19915 99797 101427;101428 101427 2 LCSGVLGTVVHGK SIDGRRGLFTGLTPRLCSGVLGTVVHGKVL PRLCSGVLGTVVHGKVLQHYQESDKGEELG R L C G K V 0 0 0 0 1 0 0 3 1 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1325.7126 Q9Y6C9;E9PIE4 Q9Y6C9 78 90 MTCH2 Mitochondrial carrier homolog 2 yes no 2;3 0.0035536 59.426 By MS/MS By MS/MS 1 1 1.1613 0.97361 NaN 1 Median NaN NaN NaN 0 0 Median 1.1613 0.97361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4505100 2197800 2307300 0 0 0 4505100 2197800 2307300 0 0 0 0 0 0 0 0 0 0 0 0 19106 4488 19916 99798;99799 101429;101430 101430 2 LCSLFYTNEEVAK VGIDYVIPKTGFYCKLCSLFYTNEEVAKNT CKLCSLFYTNEEVAKNTHCSSLPHYQKLKK K L C A K N 1 0 1 0 1 0 2 0 0 0 2 1 0 1 0 1 1 0 1 1 0 0 13 0 1572.7494 P43243;A8MXP9;A0A0R4J2E8;B3KM87;Q68E03 P43243 805 817 MATR3;DKFZp686L22104 Matrin-3 yes no 2 0.00019733 93.058 By MS/MS 2 1.0389 1.0615 0.52625 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0389 1.0615 0.52625 2 2 Median NaN NaN NaN 0 0 Median 22627000 10666000 11961000 0 0 0 0 0 0 0 0 0 0 0 0 22627000 10666000 11961000 0 0 0 19107 297 19917 99800;99801 101431;101432 101431 2 LCTMGPGKVFGELAILYNCTR VMEDGKVEVTKEGVKLCTMGPGKVFGELAI GKVFGELAILYNCTRTATVKTLVNVKLWAI K L C T R T 1 1 1 0 2 0 1 3 0 1 3 1 1 1 1 0 2 0 1 1 0 0 21 1 2399.18 Q13976;A0A2R8YE50;A0A2R8YH74;B1ALS0;A0A2R8Y507 Q13976 157 177 PRKG1 cGMP-dependent protein kinase 1 yes no 3 0.028247 14.015 By MS/MS By matching 1 1 0.79248 0.87499 27.187 2 Median 0.98948 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6347 0.72196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37890000 19301000 18589000 29960000 14536000 15425000 0 0 0 7929400 4765800 3163600 0 0 0 0 0 0 0 0 0 19108 2849 19918 99802;99803 101433 101433 1 LCTSATESEVAR KIDDMMFVLQGQWMRLCTSATESEVARGKN WMRLCTSATESEVARGKNILRNALVSHLDG R L C A R G 2 1 0 0 1 0 2 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 12 0 1322.6136 P31930 P31930 379 390 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 5.1455E-06 100.48 By MS/MS 1 1.9763 1.6698 NaN 1 Median NaN NaN NaN 0 0 Median 1.9763 1.6698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6433500 2227400 4206100 0 0 0 6433500 2227400 4206100 0 0 0 0 0 0 0 0 0 0 0 0 19109 2205 19919 99804 101434 101434 1 LCTSVTESEVAR TVADMLHVVQKEWMRLCTSVTESEVARARN WMRLCTSVTESEVARARNLLKTNMLLQLDG R L C A R A 1 1 0 0 1 0 2 0 0 0 1 0 0 0 0 2 2 0 0 2 0 0 12 0 1350.6449 O75439;G3V0E4 O75439 388 399 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.00014263 88.496 By MS/MS 2 1.2101 1.0412 12.248 2 Median NaN NaN NaN 0 0 Median 1.2101 1.0412 12.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7590100 3273000 4317100 0 0 0 7590100 3273000 4317100 0 0 0 0 0 0 0 0 0 0 0 0 19110 1673 19920 99805;99806 101435;101436;101437 101436 3 LCVLHEK RMPCTEDYLSLILNRLCVLHEKTPVSEKVT YLSLILNRLCVLHEKTPVSEKVTKCCTESL R L C E K T 0 0 0 0 1 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 897.47422 CON__P02769 CON__P02769 483 489 yes yes 2 0.0077866 94.407 By MS/MS By MS/MS 1 1 0.026999 0.024179 25.391 2 Median 0.03014 0.028934 NaN 1 1 Median 0.024185 0.020205 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22627000 22216000 410850 4178300 4105800 72490 18449000 18110000 338360 0 0 0 0 0 0 0 0 0 0 0 0 + 19111 746 19921 99807;99808 101438;101439 101439 2 LDAAMAGHIYVSGSAPSFPR QPQLISRNWFGLPGRLDAAMAGHIYVSGSA AGHIYVSGSAPSFPRAKMTKSARRHRKRYR R L D P R A 4 1 0 1 0 0 0 2 1 1 1 0 1 1 2 3 0 0 1 1 0 0 20 0 2045.9993 CON__Q3ZBS7 CON__Q3ZBS7 350 369 yes yes 3 7.1886E-22 114.4 By MS/MS 2 0.37249 0.37454 56.501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37249 0.37454 56.501 2 2 Median NaN NaN NaN 0 0 Median 10209000 7423600 2785100 0 0 0 0 0 0 0 0 0 0 0 0 10209000 7423600 2785100 0 0 0 + 19112 783 19922;19923 99809;99810 101440;101441 101440 293 2 LDADKYENDPELEK VGLEQLRRLGVLYWKLDADKYENDPELEKI KLDADKYENDPELEKIRRERNYSWMDIITI K L D E K I 1 0 1 3 0 0 3 0 0 0 2 2 0 0 1 0 0 0 1 0 0 0 14 1 1677.7734 Q9BV57 Q9BV57 41 54 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes yes 2;3 2.2337E-07 104.24 By MS/MS By MS/MS 2 2 1.0845 1.0179 9.4522 4 Median 0.95938 0.95642 6.8713 2 0 Median 1.2304 1.0877 7.4409 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36436000 19467000 16968000 33358000 17915000 15444000 3077200 1552600 1524600 0 0 0 0 0 0 0 0 0 0 0 0 19113 3846 19924 99811;99812;99813;99814 101442;101443;101444;101445 101443 4 LDADLLVPASVK NRGGRKPKRKMKTQKLDADLLVPASVKVLR TQKLDADLLVPASVKVLRRSNRKKIDDPID K L D V K V 2 0 0 2 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 12 0 1239.7075 Q8WWQ0 Q8WWQ0 1725 1736 PHIP PH-interacting protein yes yes 2 0.001379 53.683 By MS/MS By matching 3 2 0.91378 0.85012 28.686 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73583 0.77402 36.21 3 0 Median 1.0192 0.87878 4.6903 2 0 Median 5192400 2879200 2313200 0 0 0 0 0 0 0 0 0 0 0 0 4958100 2767300 2190800 234230 111870 122360 19114 3512 19925 99815;99816;99817;99818;99819 101446;101447 101447 2 LDADMPEVAVEGPNGK EGELKGPELDVKGPKLDADMPEVAVEGPNG DADMPEVAVEGPNGKWKTPKFKMPDMHFKA K L D G K W 2 0 1 2 0 0 2 2 0 0 1 1 1 0 2 0 0 0 0 2 0 0 16 0 1640.7716 Q09666 Q09666 2353 2368 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.1198E-09 100.55 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.85341 0.77741 9.6784 5 Median 0.77305 0.77466 NaN 1 0 Median 0.87555 0.76752 NaN 1 0 Median 0.90395 0.9664 NaN 1 0 Median 0.83567 0.80082 4.1945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29667000 16072000 13595000 12433000 7185000 5247800 1747200 908520 838640 11603000 6021700 5581300 3883800 1956600 1927100 0 0 0 0 0 0 19115 2749 19926;19927 99820;99821;99822;99823;99824 101448;101449;101450;101451;101452;101453;101454;101455 101449 1457 8 LDADYPLR SSGADCKGDPRNSAKLDADYPLRVLYCGVC DPRNSAKLDADYPLRVLYCGVCSLPTEYCE K L D L R V 1 1 0 2 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 8 0 961.4869 O43583;F8VVL1 O43583 23 30 DENR Density-regulated protein yes no 2 0.0028236 104.45 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.97928 0.84286 18.839 5 Median NaN NaN NaN 0 0 Median 0.97928 0.82374 NaN 1 0 Median 0.93403 0.89742 NaN 1 0 Median 1.0584 0.88033 6.1507 2 0 Median 0.5935 0.57784 NaN 1 0 Median NaN NaN NaN 0 0 Median 25081000 12517000 12564000 0 0 0 2123900 1015100 1108800 11498000 5736400 5761500 10458000 5077900 5380100 1001100 687460 313620 0 0 0 19116 1575 19928 99825;99826;99827;99828;99829 101456;101457;101458;101459;101460;101461;101462;101463;101464;101465;101466;101467;101468;101469;101470 101459 15 LDAEDVIGSRR EGKGTKAFKQPAKRKLDAEDVIGSRRQPRA AKRKLDAEDVIGSRRQPRAPKEKAQPLEDL K L D R R Q 1 2 0 2 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 1 1229.6364 P46013 P46013 2893 2903 MKI67 Antigen KI-67 yes yes 2 0.023107 50.607 By MS/MS 1 28.837 27.422 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28.837 27.422 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6900900 125160 6775800 0 0 0 0 0 0 0 0 0 6900900 125160 6775800 0 0 0 0 0 0 19117 2335 19929 99830 101471 101471 1 LDAELIQYR GLRSHMDDLNSENAKLDAELIQYREDLNQV NSENAKLDAELIQYREDLNQVITIKDSQQK K L D Y R E 1 1 0 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1119.5924 Q14789 Q14789 2529 2537 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.0035039 81.548 By MS/MS 1 1.0718 0.89906 NaN 1 Median NaN NaN NaN 0 0 Median 1.0718 0.89906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5688400 2704600 2983900 0 0 0 5688400 2704600 2983900 0 0 0 0 0 0 0 0 0 0 0 0 19118 2900 19930 99831 101472 101472 1 LDAENAIVHMGGQWLGGR TGKSKGYGFVSFYNKLDAENAIVHMGGQWL ENAIVHMGGQWLGGRQIRTNWATRKPPAPK K L D G R Q 2 1 1 1 0 1 1 4 1 1 2 0 1 0 0 0 0 1 0 1 0 0 18 0 1922.9421 Q01085;E7ETJ9 Q01085 149 166 TIAL1 Nucleolysin TIAR yes no 2;3 7.0686E-05 42.338 By matching By MS/MS By MS/MS By matching By matching 1 3 3 1 1 1.2276 1.1673 8.4915 9 Median 1.0966 1.1226 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1591 1.2675 6.5551 3 0 Median 1.3096 1.1019 5.8999 3 0 Median 1.1577 1.2322 NaN 1 0 Median 1.2649 1.0308 NaN 1 0 Median 39367000 17437000 21930000 893730 415810 477920 0 0 0 29082000 12964000 16118000 7584700 3125600 4459100 1360800 704850 655980 446170 226770 219400 19119 2682 19931 99832;99833;99834;99835;99836;99837;99838;99839;99840 101473;101474;101475;101476;101477;101478 101477 6 LDAEPRPPPTQEAA HKVNLQMVYDSPLCRLDAEPRPPPTQEAA_ RLDAEPRPPPTQEAA_______________ R L D A A - 3 1 0 1 0 1 2 0 0 0 1 0 0 0 4 0 1 0 0 0 0 0 14 1 1490.7365 Q9Y285;K7ER00 Q9Y285 495 508 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 5.86E-05 88.596 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.59701 0.55562 32.96 6 Median 0.76426 0.74886 55.46 2 0 Median 0.57349 0.49301 21.902 2 0 Median 0.5161 0.53634 NaN 1 0 Median 0.67548 0.57916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23064000 14275000 8789200 9465600 5953700 3511900 5864100 3540700 2323500 3904800 2519500 1385400 3829900 2261400 1568400 0 0 0 0 0 0 19120 4379 19932 99841;99842;99843;99844;99845;99846 101479;101480;101481;101482;101483;101484;101485;101486 101479 8 LDAFVEGVVK GTLDVLVGLSDELAKLDAFVEGVVKKVAQY DELAKLDAFVEGVVKKVAQYMADVLEDSKD K L D V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 10 0 1075.5914 P21283 P21283 61 70 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 2 0.00033827 85.676 By matching By MS/MS By matching 2 1 1 1.4323 1.5144 21.339 3 Plateau NaN NaN NaN 0 0 Median 1.2694 1.1066 NaN 1 0 Median 1.4323 1.5144 NaN 1 0 Median 1.2001 1.0076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6559100 2676100 3883000 0 0 0 1005800 435440 570340 5122100 2051800 3070400 431160 188880 242280 0 0 0 0 0 0 19121 2087 19933 99847;99848;99849;99850 101487;101488 101487 2 LDAGNQLALIEELHK VLEESWDALNAITKKLDAGNQLALIEELHK LDAGNQLALIEELHKEIRLIGNESKGEHVP K L D H K E 2 0 1 1 0 1 2 1 1 1 4 1 0 0 0 0 0 0 0 0 0 0 15 0 1662.8941 Q92616 Q92616 2223 2237 GCN1L1 Translational activator GCN1 yes yes 3 0.00019136 46.926 By MS/MS By MS/MS 1 1 1.0138 0.93139 22.427 2 Median 1.1325 1.0915 NaN 1 0 Median 0.90745 0.7948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5291100 2490900 2800100 3381000 1614100 1766900 1910100 876850 1033200 0 0 0 0 0 0 0 0 0 0 0 0 19122 3544 19934 99851;99852 101489;101490 101490 2 LDALVAEEHLTVDAR FVEVISLPKNDLLQRLDALVAEEHLTVDAR LDALVAEEHLTVDARVYSYALALKHANAKP R L D A R V 3 1 0 2 0 0 2 0 1 0 3 0 0 0 0 0 1 0 0 2 0 0 15 0 1650.8577 A6NFX8;Q9UKK9 A6NFX8 195 209 NUDT5 ADP-sugar pyrophosphatase yes no 3 0.053871 11.474 By MS/MS 1 1.021 0.86418 NaN 1 Median NaN NaN NaN 0 0 Median 1.021 0.86418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3331400 1648800 1682600 0 0 0 3331400 1648800 1682600 0 0 0 0 0 0 0 0 0 0 0 0 19123 511 19935 99853 101491;101492 101491 2 LDAPVDYFYRPETQHR HQELPLYIPPPIFSRLDAPVDYFYRPETQH DAPVDYFYRPETQHREGYNNPPISGENLIG R L D H R E 1 2 0 2 0 1 1 0 1 0 1 0 0 1 2 0 1 0 2 1 0 0 16 1 2005.9646 Q9Y5Q8;Q5T7U1;Q5T7U4;Q5T7U0 Q9Y5Q8 176 191 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3;4 3.6179E-10 100.45 By matching By MS/MS By matching By matching 1 2 1 1 0.87989 0.92866 19.908 5 Median 1.0169 1.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61854 0.66807 2.3463 2 0 Median 0.99667 0.92866 NaN 1 0 Median 0.87989 0.94092 NaN 1 0 Median NaN NaN NaN 0 0 Median 51134000 29459000 21675000 1978700 947630 1031100 0 0 0 46362000 27339000 19023000 209680 102160 107520 2583800 1070800 1513000 0 0 0 19124 4466 19936 99854;99855;99856;99857;99858 101493;101494;101495;101496 101495 4 LDASILEDR KGKSKGKGVGSARKKLDASILEDRDKPYAC GSARKKLDASILEDRDKPYACDICGKRYKN K L D D R D 1 1 0 2 0 0 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1030.5295 Q92785;J3KMZ8 Q92785 197 205 DPF2 Zinc finger protein ubi-d4 yes no 2 0.0029374 84.213 By MS/MS 1 0.37433 0.3655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37433 0.3655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28129000 19504000 8625700 0 0 0 0 0 0 28129000 19504000 8625700 0 0 0 0 0 0 0 0 0 19125 1299 19937 99859 101497 101497 1 LDDCGLTEAR WAELLPLLQQCQVVRLDDCGLTEARCKDIS CQVVRLDDCGLTEARCKDISSALRVNPALA R L D A R C 1 1 0 2 1 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1148.5132 P13489;E9PMJ3;E9PLZ3;E9PIM9;E9PMA9;E9PMN0;E9PIK5 P13489 35 44 RNH1 Ribonuclease inhibitor yes no 2 0.0016964 63.216 By MS/MS 1 1.0687 0.91606 NaN 1 Median NaN NaN NaN 0 0 Median 1.0687 0.91606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1233900 451970 781960 0 0 0 1233900 451970 781960 0 0 0 0 0 0 0 0 0 0 0 0 19126 1991 19938 99860 101498 101498 1 LDDHALTGASDSR LDAHEDKVWGLHCSRLDDHALTGASDSRVI SRLDDHALTGASDSRVILWKDVTEAEQAEE R L D S R V 2 1 0 3 0 0 0 1 1 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1356.627 Q12788;J3KNP2 Q12788 616 628 TBL3 Transducin beta-like protein 3 yes no 3 0.0030035 35.657 By MS/MS By MS/MS By matching 3 1 1 1.0909 1.1469 19.312 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99258 1.0615 19.629 3 0 Median 1.6287 1.3983 NaN 1 1 Median 1.1049 1.1469 NaN 1 0 Median NaN NaN NaN 0 0 Median 6127200 2935400 3191800 0 0 0 0 0 0 4244500 2148500 2096000 901450 334100 567350 981260 452790 528470 0 0 0 19127 2757 19939 99861;99862;99863;99864;99865 101499;101500;101501;101502 101500 4 LDDIEEFENIRK ______________________________ ELKLDDIEEFENIRKDLETRKKQKEDVEVV K L D R K D 0 1 1 2 0 0 3 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 12 1 1519.7518 Q8NHZ8 Q8NHZ8 13 24 CDC26 Anaphase-promoting complex subunit CDC26 yes yes 3 0.0013357 58.674 By MS/MS 1 1.5155 1.5812 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5155 1.5812 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2726800 1038700 1688100 0 0 0 0 0 0 2726800 1038700 1688100 0 0 0 0 0 0 0 0 0 19128 3447 19940 99866 101503 101503 1 LDDIFEPVLIPEPK NGTVRCEMPELVQHKLDDIFEPVLIPEPKI KLDDIFEPVLIPEPKIRAVSPHFDDMHSNT K L D P K I 0 0 0 2 0 0 2 0 0 2 2 1 0 1 3 0 0 0 0 1 0 0 14 0 1623.876 Q14008;H0YCF6;H0YEK7 Q14008 1510 1523 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.00084901 58.223 By MS/MS By MS/MS 1 1 0.75684 0.76181 27.456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83057 0.92504 NaN 1 0 Median 0.68966 0.62738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6425300 3527600 2897600 0 0 0 0 0 0 5129600 2804200 2325500 1295600 723480 572150 0 0 0 0 0 0 19129 2850 19941 99867;99868 101504;101505;101506;101507;101508 101506 5 LDDLFLKR SAKALYEHLTAKNTKLDDLFLKRYASLLKY LTAKNTKLDDLFLKRYASLLKYAGEPVPFI K L D K R Y 0 1 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 8 1 1018.5811 P42704 P42704 1351 1358 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0034016 117.17 By MS/MS By MS/MS 1 1 1.444 1.4262 16.028 2 Median 1.2216 1.2734 NaN 1 0 Median 1.7068 1.5974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20940000 8828100 12112000 15081000 6609100 8471400 5859400 2218900 3640500 0 0 0 0 0 0 0 0 0 0 0 0 19130 2315 19942 99869;99870 101509;101510;101511;101512 101509 4 LDDLVNWAR VAPKPSSRGEYVVAKLDDLVNWARRSSLWP EYVVAKLDDLVNWARRSSLWPMTFGLACCA K L D A R R 1 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 9 0 1100.5615 A0A087WXF6;A0A087WTI3;O75251;F5H5N1;F5GXJ1 A0A087WXF6 67 75 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 2 0.0012806 112.17 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 1 1 1 2 1.3812 1.1453 26.391 8 Median 0.96106 0.91917 24.136 2 1 Median 1.6214 1.3458 NaN 1 0 Median 0.94821 0.9099 NaN 1 1 Median 1.249 1.0134 NaN 1 0 Median 1.6596 1.7537 NaN 1 0 Median 1.6328 1.3205 13.165 2 0 Median 36207000 17918000 18290000 26165000 13216000 12949000 2311900 883910 1428000 6250200 3237900 3012300 105450 40360 65089 1107000 443200 663840 267800 96374 171430 19131 18 19943 99871;99872;99873;99874;99875;99876;99877;99878;99879 101513;101514;101515;101516;101517;101518;101519;101520 101516 8 LDDLVRPYVHK ERHLLVKVIDRILYKLDDLVRPYVHKILVV ILYKLDDLVRPYVHKILVVIEPLLIDEDYY K L D H K I 0 1 0 2 0 0 0 0 1 0 2 1 0 0 1 0 0 0 1 2 0 0 11 1 1353.7405 O75533 O75533 563 573 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 0.0030013 60.064 By MS/MS By MS/MS By MS/MS 2 2 2 0.86298 0.92682 18.834 6 Median NaN NaN NaN 0 0 Median 0.94875 0.88168 6.6807 2 0 Median 0.65839 0.74632 31.013 2 0 Median NaN NaN NaN 0 0 Median 0.86298 0.98247 0 2 0 Median NaN NaN NaN 0 0 Median 90996000 46317000 44679000 0 0 0 21503000 11376000 10127000 26701000 14298000 12402000 0 0 0 42793000 20643000 22150000 0 0 0 19132 1683 19944 99880;99881;99882;99883;99884;99885 101521;101522;101523;101524;101525 101522 5 LDDLVSTGK VLENGVDIVVGTPGRLDDLVSTGKLNLSQV VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD R L D G K L 0 0 0 2 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 946.49713 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 269 277 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00065248 106.91 By MS/MS By MS/MS By MS/MS 1 2 1 1.1246 1.2415 15.967 4 Linear NaN NaN NaN 0 0 Median 1.2158 1.063 NaN 1 0 Median 0.91039 0.95017 25.951 2 0 Median 1.1031 0.95576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39700000 19297000 20403000 0 0 0 5094900 2223800 2871100 30052000 15188000 14864000 4552700 1885000 2667800 0 0 0 0 0 0 19133 135 19945 99886;99887;99888;99889 101526;101527;101528;101529;101530;101531 101527 6 LDDMSSIVQK PELLSLNLSNNRLYRLDDMSSIVQKAPNLK NRLYRLDDMSSIVQKAPNLKILNLSGNELK R L D Q K A 0 0 0 2 0 1 0 0 0 1 1 1 1 0 0 2 0 0 0 1 0 0 10 0 1134.5591 Q9UBU9;E9PIN3;B4E227 Q9UBU9 280 289 NXF1 Nuclear RNA export factor 1 yes no 2 0.0022918 76.1 By MS/MS 1 1.1921 1.1929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1921 1.1929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20451000 9451400 11000000 0 0 0 0 0 0 20451000 9451400 11000000 0 0 0 0 0 0 0 0 0 19134 4249 19946 99890 101532 101532 1 LDDNEALIEK MGDIEGLIDKVNELKLDDNEALIEKLKHGQ VNELKLDDNEALIEKLKHGQFTLRDMYEQF K L D E K L 1 0 1 2 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1158.5768 G3V4F7;P61011 G3V4F7 248 257 SRP54 Signal recognition particle 54 kDa protein yes no 2 0.00037716 80.688 By MS/MS By MS/MS By MS/MS 1 1 1 1.0902 1.1176 9.3684 3 Plateau NaN NaN NaN 0 0 Median 1.0902 0.92898 NaN 1 1 Median 1.016 1.0463 NaN 1 0 Median 1.3029 1.1176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12112000 4726900 7385500 0 0 0 4208100 1733400 2474700 2228100 977920 1250200 5676200 2015600 3660600 0 0 0 0 0 0 19135 1116 19947 99891;99892;99893 101533;101534;101535 101535 3 LDDSFVR GRFREALGDAQQSVRLDDSFVRGHLREGKC GDAQQSVRLDDSFVRGHLREGKCHLSLGNA R L D V R G 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 7 0 850.41848 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7EK03;K7ER44;K7ELJ8;K7EJE9 Q99615 91 97 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0019527 128.75 By MS/MS By MS/MS By matching 1 1 1 1.2716 1.1744 25.252 3 Plateau 1.3284 1.267 NaN 1 0 Median 1.0816 0.93602 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88889 0.76736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16793000 7158600 9634600 9930200 4031500 5898700 5627200 2530800 3096400 0 0 0 1235800 596300 639500 0 0 0 0 0 0 19136 3759 19948 99894;99895;99896 101536;101537;101538 101536 3 LDDSLLYLR NPRVQEIQVVKLEKRLDDSLLYLRDALPEY VKLEKRLDDSLLYLRDALPEYSTFDVNMKP R L D L R D 0 1 0 2 0 0 0 0 0 0 4 0 0 0 0 1 0 0 1 0 0 0 9 0 1106.5972 P49406;S4R3W9;S4R455 P49406 183 191 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2 0.039605 33.797 By MS/MS By matching By MS/MS 1 1 1 1.16 1.0368 7.9273 3 Plateau 1.2056 1.159 NaN 1 0 Median 0.97317 1.0368 NaN 1 0 Median 1.0384 0.99419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4243500 1821400 2422100 2855500 1205200 1650300 161520 90689 70834 1226600 525580 700980 0 0 0 0 0 0 0 0 0 19137 2380 19949 99897;99898;99899 101539;101540 101540 2 LDDTVHVVIATPGR MATTGGTNLRDDIMRLDDTVHVVIATPGRI RLDDTVHVVIATPGRILDLIKKGVAKVDHV R L D G R I 1 1 0 2 0 0 0 1 1 1 1 0 0 0 1 0 2 0 0 3 0 0 14 0 1491.8045 P26196 P26196 212 225 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2;3 0.00024287 57.348 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.79477 0.75886 24.327 4 Median 0.94004 0.91309 NaN 1 0 Median 1.0179 0.85815 NaN 1 0 Median 0.58609 0.60032 15.751 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29602000 16068000 13534000 6672400 3283500 3388900 7549400 3809200 3740200 15380000 8975500 6404500 0 0 0 0 0 0 0 0 0 19138 2140 19950 99900;99901;99902;99903;99904 101541;101542;101543;101544;101545;101546 101542 6 LDDTYIK RKLDDAIEDCTNAVKLDDTYIKAYLRRAQC EDCTNAVKLDDTYIKAYLRRAQCYMDTEQY K L D I K A 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 7 0 866.43855 Q99615;K7EJ24 Q99615 323 329 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.018479 62.714 By MS/MS By MS/MS 1 1 1.0999 1.0386 18.689 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1946 1.1853 NaN 1 0 Median 1.0127 0.91004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12417000 5784900 6631700 0 0 0 0 0 0 2996800 1426900 1570000 9419800 4358000 5061800 0 0 0 0 0 0 19139 3759 19951 99905;99906 101547;101548 101548 2 LDDTYSFQVINK NIMSIFTFMGANVMRLDDTYSFQVINKTVK VMRLDDTYSFQVINKTVKMVIPALIQSDSG R L D N K T 0 0 1 2 0 1 0 0 0 1 1 1 0 1 0 1 1 0 1 1 0 0 12 0 1441.7089 Q9H583;Q5T3Q7 Q9H583 1337 1348 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00031476 82.287 By matching By MS/MS By MS/MS 1 1 2 1.2115 1.3064 20.685 4 Median NaN NaN NaN 0 0 Median 1.9603 1.8769 NaN 1 0 Median 1.2048 1.3381 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1769 1.2223 6.0359 2 0 Median NaN NaN NaN 0 0 Median 16744000 7676600 9067800 0 0 0 1287500 297430 990120 7154800 3606800 3548000 0 0 0 8302100 3772400 4529700 0 0 0 19140 3086 19952 99907;99908;99909;99910 101549;101550;101551;101552 101552 4 LDDVSNDVR DPEKLIRIYPELLKRLDDVSNDVRMAAAST PELLKRLDDVSNDVRMAAASTLVTWLQCVK R L D V R M 0 1 1 3 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 1031.4884 Q86Y56;H0Y650;E9PGY2 Q86Y56 752 760 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.0071178 52.482 By MS/MS By matching 1 1 1.3829 1.305 3.3012 2 Median 1.3422 1.3358 NaN 1 0 Median 1.4248 1.2749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1989700 816540 1173200 918540 415330 503210 1071200 401210 669970 0 0 0 0 0 0 0 0 0 0 0 0 19141 3305 19953 99911;99912 101553;101554 101554 2 LDDYQER VIDKKLRNLEKKKGKLDDYQERMNKGERLN NLEKKKGKLDDYQERMNKGERLNQDQLDAV K L D E R M 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 937.41412 Q14444;E9PLA9 Q14444 75 81 CAPRIN1 Caprin-1 yes no 2 0.062393 37.021 By matching By matching By matching By MS/MS 2 1 1 1 1.086 1.0882 14.789 5 Median 1.2156 1.2136 0.57358 2 0 Median 1.0208 0.89034 NaN 1 0 Median 1.0519 1.0882 NaN 1 0 Median 1.086 0.92096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3623200 1758600 1864600 1078700 484070 594660 1846600 896980 949620 278640 148470 130170 419220 229100 190120 0 0 0 0 0 0 19142 2878 19954 99913;99914;99915;99916;99917 101555 101555 1 LDEAVAEAHLGK HPDKYPVGVHFLPKKLDEAVAEAHLGKLNV PKKLDEAVAEAHLGKLNVKLTKLTEKQAQY K L D G K L 3 0 0 1 0 0 2 1 1 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1251.6459 P23526 P23526 390 401 AHCY Adenosylhomocysteinase yes yes 2;3 7.8879E-05 85.958 By MS/MS By MS/MS By MS/MS 4 2 2 1.2942 1.2084 13.46 7 Median 1.2556 1.1809 6.1088 4 2 Median 1.3818 1.1779 NaN 1 0 Median 1.4386 1.5123 6.6312 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46069000 19027000 27041000 32926000 13838000 19088000 9029200 3637400 5391800 4113600 1552000 2561600 0 0 0 0 0 0 0 0 0 19143 2116 19955 99918;99919;99920;99921;99922;99923;99924;99925 101556;101557;101558;101559;101560;101561;101562;101563;101564;101565 101565 10 LDEELEDAEK LLNKMKKANEDELKRLDEELEDAEKNLGES DELKRLDEELEDAEKNLGESEIRDAMMAKA R L D E K N 1 0 0 2 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1189.535 Q15008;C9J0E9;C9J7B7 Q15008 84 93 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.00059853 114.5 By MS/MS By MS/MS 1 1 1.0218 0.92686 6.7829 2 Median 0.92217 0.88345 NaN 1 0 Median 1.1322 0.9724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5491400 2478300 3013100 1776500 859900 916640 3714900 1618400 2096500 0 0 0 0 0 0 0 0 0 0 0 0 19144 2911 19956 99926;99927 101566;101567;101568 101567 3 LDEFGEQLSK EMVATEQERTPLQQKLDEFGEQLSKVISLI PLQQKLDEFGEQLSKVISLICIAVWIINIG K L D S K V 0 0 0 1 0 1 2 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5663 P16615;H7C5W9;O14983 P16615 253 262 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00057003 115.7 By MS/MS By matching By matching 2 2 1 1.257 1.2001 12.936 5 Median NaN NaN NaN 0 0 Median 1.19 1.0629 17.166 2 0 Median 1.2401 1.2056 2.3418 2 0 Median 1.5476 1.3314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39345000 16745000 22600000 0 0 0 12127000 4795000 7332100 25590000 11261000 14329000 1628400 688790 939590 0 0 0 0 0 0 19145 2031 19957 99928;99929;99930;99931;99932 101569 101569 1 LDEGLRKEDMAVHVR DFDVKRKYFRQELERLDEGLRKEDMAVHVR LDEGLRKEDMAVHVRRDHVFEDSYRELHRK R L D V R R 1 2 0 2 0 0 2 1 1 0 2 1 1 0 0 0 0 0 0 2 0 0 15 2 1766.9098 Q7Z6Z7;H0Y659 Q7Z6Z7 4008 4022 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 4 0.00010463 55.656 By MS/MS 2 0.85933 0.85255 3.4033 2 Median 0.85933 0.85255 3.4033 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21069000 11501000 9567200 21069000 11501000 9567200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19146 3253 19958 99933;99934 101570;101571 101570 2 LDEGWVPLEIMIK DFNLPRDKFLKEQIKLDEGWVPLEIMIKFN IKLDEGWVPLEIMIKFNRLNRLTTDFNVIV K L D I K F 0 0 0 1 0 0 2 1 0 2 2 1 1 0 1 0 0 1 0 1 0 0 13 0 1541.8164 P05455;E7ERC4;E9PFL9 P05455 42 54 SSB Lupus La protein yes no 2 0.00034197 76.332 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0967 0.96972 7.8857 5 Median 1.1571 1.1371 NaN 1 0 Median 1.1361 0.96779 3.9896 2 0 Median 0.97923 0.96972 NaN 1 0 Median 1.0553 0.93965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30975000 14619000 16356000 202460 115430 87023 27282000 12883000 14399000 3324300 1539200 1785100 166830 81421 85407 0 0 0 0 0 0 19147 1867 19959 99935;99936;99937;99938;99939 101572;101573;101574;101575 101573 4 LDEIYVAGLVAHSDLDER QTLLDAGLPQKVAEKLDEIYVAGLVAHSDL IYVAGLVAHSDLDERAIEALKEFNEDGALA K L D E R A 2 1 0 3 0 0 2 1 1 1 3 0 0 0 0 1 0 0 1 2 0 0 18 0 2014.0007 O60506;F6UXX1 O60506 43 60 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 3 0.022928 25.198 By MS/MS 1 1.4252 1.2294 NaN 1 Median NaN NaN NaN 0 0 Median 1.4252 1.2294 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1460600 695710 764850 0 0 0 1460600 695710 764850 0 0 0 0 0 0 0 0 0 0 0 0 19148 1619 19960 99940 101576 101576 1 LDELEELLTNNR LMDDIYQFSKNFSLRLDELEELLTNNRIWR SLRLDELEELLTNNRIWRNRTIDIGVVTAE R L D N R I 0 1 2 1 0 0 3 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 12 0 1457.7362 O75306 O75306 255 266 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2 6.3504E-06 125.48 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.90726 0.84881 87.471 6 Median 0.74765 0.74592 NaN 1 1 Median 1.4689 1.2613 0.17945 2 0 Median 0.31856 0.3303 140.8 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91428 0.806 NaN 1 0 Median 24185000 12670000 11515000 2835400 1600200 1235200 8962100 3360800 5601300 12031000 7537000 4493600 0 0 0 0 0 0 357080 172350 184720 19149 1657 19961 99941;99942;99943;99944;99945;99946 101577;101578;101579;101580;101581;101582 101582 6 LDELQASDVSVK KLKESNTTKGELQLKLDELQASDVSVKYRE QLKLDELQASDVSVKYREKRLEQEKELLHS K L D V K Y 1 0 0 2 0 1 1 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 12 0 1302.6667 P12270 P12270 166 177 TPR Nucleoprotein TPR yes yes 2 5.0596E-06 155.15 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 1 0.81916 0.81017 62.264 9 Median 0.91615 0.86564 NaN 1 0 Median 0.52788 0.46768 77.897 3 0 Median 0.86908 0.94102 2.0347 2 1 Median 0.99237 0.93565 20.366 2 0 Median NaN NaN NaN 0 0 Median 0.69745 0.59763 NaN 1 0 Median 144030000 80373000 63655000 9107000 4116600 4990400 47199000 31769000 15430000 68251000 34868000 33384000 17148000 8331400 8816900 0 0 0 2321900 1288600 1033300 19150 1978 19962 99947;99948;99949;99950;99951;99952;99953;99954;99955 101583;101584;101585;101586;101587;101588;101589;101590;101591;101592;101593 101586 11 LDELRGQDEGK NYRQLLERLQARQSRLDELRGQDEGKAQEL RQSRLDELRGQDEGKAQELEAKMKWTNLLY R L D G K A 0 1 0 2 0 1 2 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1258.6153 O75683 O75683 250 260 SURF6 Surfeit locus protein 6 yes yes 3 0.0023833 42.336 By matching By matching By MS/MS 1 1 1 0.71464 0.79136 23.965 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71464 0.79136 NaN 1 0 Median 0.68394 0.64544 NaN 1 0 Median 1.0013 1.0406 NaN 1 0 Median NaN NaN NaN 0 0 Median 3822600 2066000 1756600 0 0 0 0 0 0 563620 338670 224940 585390 352940 232450 2673600 1374400 1299200 0 0 0 19151 1690 19963 99956;99957;99958 101594 101594 1 LDELRGQDEGKAQELEAK NYRQLLERLQARQSRLDELRGQDEGKAQEL LRGQDEGKAQELEAKMKWTNLLYKAEGVKI R L D A K M 2 1 0 2 0 2 4 2 0 0 3 2 0 0 0 0 0 0 0 0 0 0 18 2 2028.0124 O75683 O75683 250 267 SURF6 Surfeit locus protein 6 yes yes 3 3.6979E-06 52.784 By MS/MS 1 1.0837 1.2397 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0837 1.2397 NaN 1 0 Median NaN NaN NaN 0 0 Median 6226200 2583500 3642700 0 0 0 0 0 0 0 0 0 0 0 0 6226200 2583500 3642700 0 0 0 19152 1690 19964 99959 101595;101596 101596 2 LDELYGTWR HVGRFCIWTESAFRKLDELYGTWRKAASLK ESAFRKLDELYGTWRKAASLKSNYNLPMHK K L D W R K 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1151.5611 P36578;H3BM89 P36578 260 268 RPL4 60S ribosomal protein L4 yes no 2 0.0014358 81.548 By MS/MS By matching By MS/MS 1 1 1 1.1083 1.0663 16.215 3 Plateau 1.1083 1.0663 NaN 1 0 Median 1.1254 0.95885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77115 0.77549 NaN 1 1 Median NaN NaN NaN 0 0 Median 16150000 8104200 8046000 8961200 4615300 4346000 3725200 1580400 2144800 0 0 0 0 0 0 3463700 1908500 1555200 0 0 0 19153 2260 19965 99960;99961;99962 101597;101598;101599 101598 3 LDEMEFNPVQQPQLNEK LKMKDPKQIIRDMEKLDEMEFNPVQQPQLN EMEFNPVQQPQLNEKVLKDKRKKLRETFER K L D E K V 0 0 2 1 0 3 3 0 0 0 2 1 1 1 2 0 0 0 0 1 0 0 17 0 2057.9728 Q9Y2W2;F5H5G4 Q9Y2W2 60 76 WBP11 WW domain-binding protein 11 yes no 2 0.063117 31.639 By MS/MS 1 0.72785 0.77664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72785 0.77664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2129600 1308500 821090 0 0 0 0 0 0 2129600 1308500 821090 0 0 0 0 0 0 0 0 0 19154 4394 19966 99963 101600 101600 1 LDENSAFLQFNWK KVSDLEKAAAQRKAKLDENSAFLQFNWKAD AKLDENSAFLQFNWKADVVESWIGEKENSL K L D W K A 1 0 2 1 0 1 1 0 0 0 2 1 0 2 0 1 0 1 0 0 0 0 13 0 1610.7729 A0A0D9SF54;A0A1B0GV13;Q13813 Q13813 1972 1984 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 1.4353E-05 105.78 By MS/MS By MS/MS By MS/MS 1 1 1 1.3997 1.3294 11.325 3 Median 1.3997 1.3294 NaN 1 1 Median 1.5675 1.3696 NaN 1 1 Median 0.99736 1.1109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10023000 4680300 5342900 2522100 1109800 1412300 2485600 1025100 1460500 5015600 2545400 2470200 0 0 0 0 0 0 0 0 0 19155 264;2838 19967 99964;99965;99966 101601;101602;101603 101602 3 LDEREAGITEK ALAEGLGVIACIGEKLDEREAGITEKVVFE IGEKLDEREAGITEKVVFEQTKVIADNVKD K L D E K V 1 1 0 1 0 0 3 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1259.6357 P60174;U3KPZ0;U3KQF3 P60174 169 179 TPI1 Triosephosphate isomerase yes no 2;3 5.0113E-05 90.005 By MS/MS By MS/MS By MS/MS By MS/MS 6 2 2 2 1.0742 1.0231 13.075 11 Median 0.98401 1.0231 17.835 5 0 Median 1.0858 0.99689 5.7846 2 0 Median 1.079 1.1197 0.61333 2 0 Median 1.1223 0.99343 0.12523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 221160000 106450000 114710000 151620000 73907000 77711000 54061000 25316000 28746000 11156000 5344400 5811600 4323500 1881800 2441700 0 0 0 0 0 0 19156 2523 19968 99967;99968;99969;99970;99971;99972;99973;99974;99975;99976;99977;99978 101604;101605;101606;101607;101608;101609;101610;101611;101612;101613;101614;101615;101616;101617;101618 101612 15 LDETDDPDDYGDR NYPATFWVNPQFKIRLDETDDPDDYGDRES IRLDETDDPDDYGDRESGCSFVLALMQKHR R L D D R E 0 1 0 6 0 0 1 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 13 0 1524.5852 P07384 P07384 401 413 CAPN1 Calpain-1 catalytic subunit yes yes 2 6.7811E-07 104.52 By matching By MS/MS By matching 1 1 1 1.0911 0.94914 7.2001 3 Median 0.86454 0.86055 NaN 1 0 Median 1.0911 0.94914 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.155 0.99024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679200 1707700 1971500 894890 471000 423890 1994600 853810 1140700 0 0 0 789710 382880 406830 0 0 0 0 0 0 19157 1886 19969 99979;99980;99981 101619;101620 101619 2 LDETGNLMISEGHFASETIR AFEAEVQANSGAIVKLDETGNLMISEGHFA NLMISEGHFASETIRTRLMELHRQWELLLE K L D I R T 1 1 1 1 0 0 3 2 1 2 2 0 1 1 0 2 2 0 0 0 0 0 20 0 2219.0528 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 102 121 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 4.2238E-20 105.79 By MS/MS By MS/MS By MS/MS 2 2 4 0.89599 0.96639 25.066 8 Median 0.97566 0.92998 44.569 2 1 Median 1.1974 1.0058 4.3152 2 1 Median 0.87147 0.9499 25.766 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111640000 54423000 57212000 18973000 9314900 9658500 8353400 3459300 4894100 84309000 41649000 42659000 0 0 0 0 0 0 0 0 0 19158 264;2838 19970;19971 99982;99983;99984;99985;99986;99987;99988;99989 101621;101622;101623;101624;101625;101626;101627;101628 101623 126 8 LDEYIAIAK GMLVWSPNQNLSEAKLDEYIAIAKEKHGYN NLSEAKLDEYIAIAKEKHGYNMEQALGMLF K L D A K E 2 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1034.5648 Q9UKL0;Q9P2K3;E9PQE5;B4DV59;E9PR63 Q9UKL0 149 157 RCOR1;RCOR3 REST corepressor 1;REST corepressor 3 yes no 2 0.0021965 73.665 By MS/MS By MS/MS 2 2 1.1637 1.0603 16.487 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90743 0.92201 1.5283 2 0 Median 1.4181 1.2252 2.207 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19845000 10159000 9686300 0 0 0 0 0 0 17887000 9331900 8554700 1958800 827190 1131600 0 0 0 0 0 0 19159 4312 19972 99990;99991;99992;99993 101629;101630;101631;101632;101633 101631 5 LDFEGPDAK EGTLKGPEVDLKGPRLDFEGPDAKLSGPSL DLKGPRLDFEGPDAKLSGPSLKMPSLEISA R L D A K L 1 0 0 2 0 0 1 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 9 0 990.46583 Q09666 Q09666 4890 4898 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00091763 90.709 By MS/MS By MS/MS 2 2 1.0088 1.0356 16.639 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91184 0.9952 20.882 2 0 Median 1.1258 1.0618 18.776 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27379000 13112000 14267000 0 0 0 0 0 0 15935000 7707600 8227800 11444000 5404600 6039300 0 0 0 0 0 0 19160 2749 19973 99994;99995;99996;99997 101634;101635;101636;101637;101638 101634 5 LDFLPDMMVEGR ______________________________ AFKLDFLPDMMVEGRLLVPDRINGTANKMN K L D G R L 0 1 0 2 0 0 1 1 0 0 2 0 2 1 1 0 0 0 0 1 0 0 12 0 1421.6683 E9PC62;A0A0J9YXJ0 E9PC62 7 18 CELF2 yes no 2 0.00062698 65.347 By matching By matching By MS/MS By matching 1 1 1 1 0.88558 0.85311 31.89 4 Median 0.67243 0.65864 NaN 1 0 Median 1.508 1.3355 NaN 1 0 Median 0.6971 0.73274 NaN 1 0 Median 1.125 0.99324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3618700 1828800 1789900 819460 454510 364950 428010 70444 357570 2242400 1243300 999130 128830 60614 68211 0 0 0 0 0 0 19161 294 19974 99998;99999;100000;100001 101639;101640 101640 2 LDFLRPYTVPNK GSGSNIDLCVISKNKLDFLRPYTVPNKKGT KNKLDFLRPYTVPNKKGTRLGRYRCEKGTT K L D N K K 0 1 1 1 0 0 0 0 0 0 2 1 0 1 2 0 1 0 1 1 0 0 12 1 1461.798 Q99436 Q99436 226 237 PSMB7 Proteasome subunit beta type-7 yes yes 3 0.031922 21.671 By MS/MS 1 0.81545 0.85136 NaN 1 Median 0.81545 0.85136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14429000 7663600 6764900 14429000 7663600 6764900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19162 3744 19975 100002 101641;101642 101642 2 LDFLRPYTVPNKK GSGSNIDLCVISKNKLDFLRPYTVPNKKGT NKLDFLRPYTVPNKKGTRLGRYRCEKGTTA K L D K K G 0 1 1 1 0 0 0 0 0 0 2 2 0 1 2 0 1 0 1 1 0 0 13 2 1589.893 Q99436 Q99436 226 238 PSMB7 Proteasome subunit beta type-7 yes yes 3;4 0.0040985 34.898 By MS/MS By MS/MS By matching 3 2 1 0.89597 0.86601 11.933 5 Median 0.84747 0.89003 16.994 2 0 Median 0.87172 0.82908 6.1631 2 0 Median 0.89597 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70678000 37443000 33234000 62446000 32788000 29658000 5849500 3439000 2410500 2382300 1216600 1165600 0 0 0 0 0 0 0 0 0 19163 3744 19976 100003;100004;100005;100006;100007;100008 101643;101644;101645;101646;101647;101648 101645 6 LDFNLIR ILARNIPEDNADMARLDFNLIRVVACNLYP EDNADMARLDFNLIRVVACNLYPFVKTVAS R L D I R V 0 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 7 0 889.50215 P31939;C9JLK0 P31939 91 97 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0076099 88.643 By MS/MS By matching By MS/MS By matching By matching By matching 2 3 2 1 1 1 1.1687 1.0836 22.213 10 Median 1.2384 1.1803 9.2718 2 0 Median 1.2597 1.0623 12.292 3 0 Median 1.2646 1.3254 23.364 2 0 Median 1.1606 0.99388 NaN 1 0 Median 1.051 1.0582 NaN 1 0 Median 0.74589 0.65957 NaN 1 0 Median 121690000 56950000 64737000 47677000 21717000 25960000 69649000 33293000 36355000 3691400 1615200 2076100 269310 129070 140240 336120 158460 177660 65014 37748 27266 19164 2207 19977 100009;100010;100011;100012;100013;100014;100015;100016;100017;100018 101649;101650;101651;101652 101650 4 LDFNTDEEKK FSKKDCEAYALQMTKLDFNTDEEKKMVEEV LQMTKLDFNTDEEKKMVEEVFSNAIDCLSD K L D K K M 0 0 1 2 0 0 2 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 10 1 1237.5826 P42285 P42285 409 418 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 0.00077923 57.347 By MS/MS By matching By MS/MS 2 1 2 1.0893 1.0194 17.093 5 Median NaN NaN NaN 0 0 Median 1.1277 1.0547 4.9755 2 0 Median 0.83848 0.95837 NaN 1 0 Median 1.2873 1.2262 26.126 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7525400 3422000 4103400 0 0 0 4277500 1826000 2451500 1244000 752870 491120 2003900 843150 1160700 0 0 0 0 0 0 19165 2309 19978 100019;100020;100021;100022;100023 101653;101654 101653 2 LDFSITKDPAAEAR AAFYILFFTVIIYVRLDFSITKDPAAEARM RLDFSITKDPAAEARMKVACITEQVLTLVN R L D A R M 3 1 0 2 0 0 1 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 14 1 1532.7835 P04843;B7Z4L4 P04843 459 472 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 0.045703 37.555 By MS/MS 1 0.95892 0.96313 NaN 1 Median 0.95892 0.96313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5614700 2880500 2734200 5614700 2880500 2734200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19166 1853 19979 100024 101655 101655 0 LDFYQHSWLPAR FKRAMDLVQEEFLQRLDFYQHSWLPARALV LQRLDFYQHSWLPARALVEEALAQRFQVDP R L D A R A 1 1 0 1 0 1 0 0 1 0 2 0 0 1 1 1 0 1 1 0 0 0 12 0 1531.7572 Q9HB07;F8VQQ3;F8VR84 Q9HB07 232 243 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2;3 7.8145E-05 93.111 By MS/MS By matching 4 2 0.90802 0.88578 8.0543 6 Median 0.89817 0.88578 7.0235 4 0 Median 0.97427 0.85438 11.236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28011000 14792000 13220000 27512000 14543000 12969000 499600 248920 250680 0 0 0 0 0 0 0 0 0 0 0 0 19167 4014 19980 100025;100026;100027;100028;100029;100030 101656;101657;101658;101659 101656 4 LDGAHAPELTK VPTFLFFKNSQKIDRLDGAHAPELTKKVQR KIDRLDGAHAPELTKKVQRHASSGSFLPSA R L D T K K 2 0 0 1 0 0 1 1 1 0 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1150.5982 O76003 O76003 100 110 GLRX3 Glutaredoxin-3 yes yes 2 0.020766 53.327 By MS/MS 1 1.5514 1.326 NaN 1 Median NaN NaN NaN 0 0 Median 1.5514 1.326 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6002400 1861500 4140800 0 0 0 6002400 1861500 4140800 0 0 0 0 0 0 0 0 0 0 0 0 19168 1715 19981 100031 101660 101660 1 LDGEASINNR VQNEEGKCEVTEVSKLDGEASINNRKGKLI TEVSKLDGEASINNRKGKLIFFYEWSVKLN K L D N R K 1 1 2 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1087.5258 O95433;H0YJG7;G3V3W9 O95433 64 73 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.00040842 76.679 By MS/MS By MS/MS 1 1 1.0843 0.93783 14.925 2 Median NaN NaN NaN 0 0 Median 1.1967 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98242 0.8439 NaN 1 0 Median 6995000 3303100 3691900 0 0 0 6077300 2847100 3230100 0 0 0 0 0 0 0 0 0 917680 455920 461750 19169 1773 19982 100032;100033 101661;101662 101661 2 LDGELGGQTLEHSTVLGLPAGAEER VMFTNCMQKFTQSMKLDGELGGQTLEHSTV EHSTVLGLPAGAEERARKELARKHLAEHAD K L D E R A 2 1 0 1 0 1 4 5 1 0 5 0 0 0 1 1 2 0 0 1 0 0 25 0 2548.2769 Q9BSJ2;B3KTU7 Q9BSJ2 771 795 TUBGCP2 Gamma-tubulin complex component 2 yes no 3 2.9658E-17 66.853 By MS/MS 1 0.76034 0.81234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76034 0.81234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4661800 2835200 1826600 0 0 0 0 0 0 4661800 2835200 1826600 0 0 0 0 0 0 0 0 0 19170 3815 19983 100034 101663;101664 101663 2 LDGFSVLMR CLVREQEAGLLQFLRLDGFSVLMRAMQQQV LLQFLRLDGFSVLMRAMQQQVQKLKVKSAF R L D M R A 0 1 0 1 0 0 0 1 0 0 2 0 1 1 0 1 0 0 0 1 0 0 9 0 1036.5376 Q9NZL4 Q9NZL4 229 237 HSPBP1 Hsp70-binding protein 1 yes yes 2 0.011663 47.082 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.0839 1.0763 25.701 7 Median 1.1019 1.0791 0.36438 2 0 Median 0.77021 0.67184 15.581 2 0 Median 1.161 1.1859 0.83717 2 0 Median 1.0839 0.91783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23685000 11010000 12676000 19050000 8821800 10228000 419010 203720 215290 4037000 1901800 2135200 179170 82324 96845 0 0 0 0 0 0 19171 4190 19984 100035;100036;100037;100038;100039;100040;100041 101665;101666;101667;101668 101665 4 LDGLVETPTGYIESLPR QMMQNPQILAALQERLDGLVETPTGYIESL GLVETPTGYIESLPRVVKRRVNALKNLQVK R L D P R V 0 1 0 1 0 0 2 2 0 1 3 0 0 0 2 1 2 0 1 1 0 0 17 0 1858.9676 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;F8VXI6;F8VUX1;F8VRJ2 F8W020 56 72 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 1.5296E-07 95.417 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.80253 0.69609 34.856 6 Median 0.6328 0.6166 19.039 2 0 Median 0.80253 0.68674 0.020316 2 0 Median 1.4291 1.4893 NaN 1 0 Median 1.0232 0.86242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44043000 23713000 20330000 30632000 16862000 13770000 9694000 5218000 4476000 3555400 1551300 2004100 161140 81437 79704 0 0 0 0 0 0 19172 1033 19985 100042;100043;100044;100045;100046;100047 101669;101670;101671;101672;101673;101674;101675;101676 101674 8 LDGNAIVDFVR SVVVAVDRIFTGSTRLDGNAIVDFVRWLCA GSTRLDGNAIVDFVRWLCAVSMDELLSTTH R L D V R W 1 1 1 2 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 2 0 0 11 0 1217.6404 Q9Y6D6;E5RIF2;E5RHL7;Q9Y6D5 Q9Y6D6 1135 1145 ARFGEF1;ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 1;Brefeldin A-inhibited guanine nucleotide-exchange protein 2 no no 2 0.0022363 54.608 By MS/MS By matching By matching By matching 1 3 1 1 1.115 0.92658 35.779 6 Median 0.77539 0.76077 NaN 1 0 Median 1.0853 0.92668 3.233 3 0 Plateau NaN NaN NaN 0 0 Median 1.2523 1.0473 NaN 1 0 Median 2.057 2.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median 10886000 5251200 5635200 3183500 1673800 1509700 5366100 2508900 2857200 0 0 0 1317600 648410 669240 1019300 420110 599140 0 0 0 19173 850;4489 19986 100048;100049;100050;100051;100052;100053 101677;101678 101677 2 LDGNLLTQPGQAR LWLSVTCLIPFDFSRLDGNLLTQPGQARMS SRLDGNLLTQPGQARMSIMDRILQIAESYL R L D A R M 1 1 1 1 0 2 0 2 0 0 3 0 0 0 1 0 1 0 0 0 0 0 13 0 1381.7314 Q9BTW9;J3KR97 Q9BTW9 170 182 TBCD Tubulin-specific chaperone D yes no 2 3.6302E-11 136.02 By MS/MS By MS/MS 2 1 0.90758 0.81893 28.075 2 Median 0.6968 0.67147 NaN 1 1 Median 1.1821 0.99876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15085000 7984900 7099900 10350000 5793000 4557500 4734300 2191900 2542400 0 0 0 0 0 0 0 0 0 0 0 0 19174 1324 19987 100054;100055;100056 101679;101680;101681;101682 101679 4 LDGNQDLIR ASIFAWTRGLEHRGKLDGNQDLIRFAQMLE LEHRGKLDGNQDLIRFAQMLEKVCVETVES K L D I R F 0 1 1 2 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1042.5407 P48735 P48735 385 393 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 0.006571 54.157 By matching By MS/MS 1 1 0.93615 0.86443 24.246 2 Median 0.72991 0.72824 NaN 1 0 Median 1.2007 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4617200 2455000 2162200 2801700 1599600 1202100 1815500 855420 960040 0 0 0 0 0 0 0 0 0 0 0 0 19175 2367 19988 100057;100058 101683 101683 1 LDGQTPHEEREEAIEAFNAPNSSK ILEDYCMWRGYEYCRLDGQTPHEEREEAIE REEAIEAFNAPNSSKFIFMLSTRAGGLGIN R L D S K F 3 1 2 1 0 1 5 1 1 1 1 1 0 1 2 2 1 0 0 0 0 0 24 1 2668.2365 A0A0A0MRP6 A0A0A0MRP6 532 555 SMARCA1 yes yes 4 1.3218E-05 47.728 By MS/MS 1 0.43429 0.49198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43429 0.49198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6455900 4670300 1785700 0 0 0 0 0 0 6455900 4670300 1785700 0 0 0 0 0 0 0 0 0 19176 167 19989 100059 101684 101684 1 LDHHPEWFNVYNK RAFGFMTRVALQAEKLDHHPEWFNVYNKVH EKLDHHPEWFNVYNKVHITLSTHECAGLSE K L D N K V 0 0 2 1 0 0 1 0 2 0 1 1 0 1 1 0 0 1 1 1 0 0 13 0 1697.795 P61457 P61457 60 72 PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes yes 3 0.031961 19.394 By MS/MS 1 0.87381 0.79842 NaN 1 Median 0.87381 0.79842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5874000 3246300 2627600 5874000 3246300 2627600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19177 2558 19990 100060 101685 101685 1 LDHKFDLMYAK CMLSNTTAIAEAWARLDHKFDLMYAKRAFV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG R L D A K R 1 0 0 2 0 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 0 11 1 1379.6908 Q9BQE3;F5H5D3;A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;V9GZ17 P68363 391 401 TUBA1C;TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA8 Tubulin alpha-1C chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2;3 2.1959E-09 177.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 20 15 6 6 12 13 1.2547 1.1765 28.565 72 Median 1.1713 1.1304 15.453 20 2 Median 1.2263 1.1249 20.886 15 3 Median 1.2127 1.2594 16.878 6 1 Median 1.3169 1.2831 17.897 6 0 Median 2.1165 2.2606 29.411 12 1 Median 1.3868 1.1925 15.496 13 1 Median 2108000000 916140000 1191900000 1085600000 495210000 590380000 294020000 127730000 166290000 147910000 66001000 81906000 307830000 129970000 177860000 149150000 45402000 103750000 123500000 51825000 71670000 19178 2633;3212;1034 19991;19992 100061;100062;100063;100064;100065;100066;100067;100068;100069;100070;100071;100072;100073;100074;100075;100076;100077;100078;100079;100080;100081;100082;100083;100084;100085;100086;100087;100088;100089;100090;100091;100092;100093;100094;100095;100096;100097;100098;100099;100100;100101;100102;100103;100104;100105;100106;100107;100108;100109;100110;100111;100112;100113;100114;100115;100116;100117;100118;100119;100120;100121;100122;100123;100124;100125;100126;100127;100128;100129;100130;100131;100132 101686;101687;101688;101689;101690;101691;101692;101693;101694;101695;101696;101697;101698;101699;101700;101701;101702;101703;101704;101705;101706;101707;101708;101709;101710;101711;101712;101713;101714;101715;101716;101717;101718;101719;101720;101721;101722;101723;101724;101725;101726;101727;101728;101729;101730;101731;101732;101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744;101745;101746;101747;101748;101749;101750;101751;101752;101753;101754;101755;101756;101757;101758;101759;101760;101761;101762;101763;101764 101693 355 79 LDHKFDLMYAKR CMLSNTTAIAEAWARLDHKFDLMYAKRAFV WARLDHKFDLMYAKRAFVHWYVGEGMEEGE R L D K R A 1 1 0 2 0 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 0 12 2 1535.7919 Q9BQE3;F5H5D3;A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;V9GZ17 P68363 391 402 TUBA1C;TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA8 Tubulin alpha-1C chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 3 0.037307 34.75 By MS/MS By matching 1 1 1.259 1.2996 0.21186 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1378 1.3015 NaN 1 0 Median 1.3931 1.2976 NaN 1 0 Median 10392000 4313400 6078900 0 0 0 0 0 0 0 0 0 0 0 0 4998000 1798800 3199300 5394300 2514700 2879700 19179 2633;3212;1034 19993 100133;100134 101765 101765 0 LDHVVTIIK SSISDYAVKIVKANKLDHVVTIIKGKVEEV IVKANKLDHVVTIIKGKVEEVELPVEKVDI K L D I K G 0 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1036.6281 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4 E9PKG1 89 97 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 0.00081314 96.492 By MS/MS By matching 1 1 1.1983 1.1249 21.277 2 Median NaN NaN NaN 0 0 Median 1.5338 1.3075 NaN 1 0 Median 0.93619 0.96774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19111000 8830300 10280000 0 0 0 8646900 3631000 5015900 10464000 5199400 5264500 0 0 0 0 0 0 0 0 0 19180 947 19994 100135;100136 101766;101767 101767 2 LDHYAIIK RQPKYPRKSAPRRNKLDHYAIIKFPLTTES SAPRRNKLDHYAIIKFPLTTESAMKKIEDN K L D I K F 1 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 73 80 RPL23A 60S ribosomal protein L23a yes no 2 0.0034702 94.262 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1.043 0.86958 32.94 5 Median 1.0543 0.97561 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92142 0.86366 NaN 1 1 Median 0.52612 0.433 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0463 0.8765 1.1214 2 1 Median 48876000 23813000 25062000 29313000 13600000 15712000 0 0 0 14242000 7540100 6701800 542950 384100 158850 0 0 0 4777900 2288700 2489200 19181 544 19995 100137;100138;100139;100140;100141;100142 101768;101769;101770;101771;101772;101773 101769 6 LDHYAIIKFPLTTESAMK RQPKYPRKSAPRRNKLDHYAIIKFPLTTES YAIIKFPLTTESAMKKIEDNNTLVFIVDVK K L D M K K 2 0 0 1 0 0 1 0 1 2 2 2 1 1 1 1 2 0 1 0 0 0 18 1 2077.0918 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 73 90 RPL23A 60S ribosomal protein L23a yes no 3 1.611E-06 64.454 By MS/MS By matching By matching 1 1 1 0.9249 0.85079 21.059 3 Median 0.82527 0.8398 NaN 1 0 Median 0.9249 0.85079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1509 1.2171 NaN 1 0 Median NaN NaN NaN 0 0 Median 7433800 3788800 3645000 5483100 2996700 2486400 304520 129740 174780 0 0 0 0 0 0 1646200 662380 983850 0 0 0 19182 544 19996 100143;100144;100145 101774;101775 101774 2 LDIAFGTHHTK AQAKPYENISLCQAKLDIAFGTHHTKMMLL CQAKLDIAFGTHHTKMMLLLYEEGLRVVIH K L D T K M 1 0 0 1 0 0 0 1 2 1 1 1 0 1 0 0 2 0 0 0 0 0 11 0 1238.6408 G3V2F4;E7EPD8;Q9NUW8;G3V2J6;G3V2U6;Q9BRS7;H0YJL7 G3V2F4 255 265 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 3 0.0086016 30.889 By MS/MS 1 1.2317 1.0586 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2317 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 950150 374190 575960 0 0 0 0 0 0 0 0 0 950150 374190 575960 0 0 0 0 0 0 19183 869 19997 100146 101776;101777 101776 2 LDIDPETITWQR DPTTLTDEEINRFARLDIDPETITWQRVLD FARLDIDPETITWQRVLDTNDRFLRKITIG R L D Q R V 0 1 0 2 0 1 1 0 0 2 1 0 0 0 1 0 2 1 0 0 0 0 12 0 1485.7464 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 521 532 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00058433 74.162 By matching By MS/MS 1 2 0.46889 0.47155 89.821 2 Median NaN NaN NaN 0 0 Median 0.26372 0.24986 NaN 1 0 Median 0.83368 0.88994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7153300 4041300 3112000 0 0 0 2130700 1486600 644070 5022700 2554700 2467900 0 0 0 0 0 0 0 0 0 19184 1968 19998 100147;100148;100149 101778;101779 101778 2 LDIDSPPITAR LHAAMADTFLEHMCRLDIDSPPITARNTGI HMCRLDIDSPPITARNTGIICTIGPASRSV R L D A R N 1 1 0 2 0 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1196.6401 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3;P14618;B4DNK4 P14618 33 43 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00011336 137.95 By MS/MS By MS/MS By MS/MS By MS/MS 7 6 1 2 0.84062 0.70593 34.583 16 Median 0.9146 0.70313 7.6829 7 0 Linear 0.86852 0.69882 51.384 6 0 Plateau 0.87333 0.86181 NaN 1 0 Median 0.87435 0.74079 6.256 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 822070000 435400000 386670000 535010000 280950000 254060000 238910000 128560000 110350000 40814000 22192000 18622000 7333400 3707200 3626200 0 0 0 0 0 0 19185 2005;1237 19999 100150;100151;100152;100153;100154;100155;100156;100157;100158;100159;100160;100161;100162;100163;100164;100165 101780;101781;101782;101783;101784;101785;101786;101787;101788;101789;101790;101791;101792;101793;101794;101795;101796;101797;101798;101799;101800;101801;101802;101803;101804;101805;101806;101807;101808;101809;101810;101811;101812;101813;101814;101815;101816;101817;101818;101819;101820;101821;101822;101823;101824;101825 101794 46 LDIEQYR LIHGGVRYLQKAIMKLDIEQYRMVKEALHE YLQKAIMKLDIEQYRMVKEALHERANLLEI K L D Y R M 0 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 935.47125 P43304;F5GYK7 P43304 129 135 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial;Glycerol-3-phosphate dehydrogenase yes no 2 0.015644 70.912 By MS/MS By matching 1 1 1.073 0.9783 5.9204 2 Median 1.0649 1.0201 NaN 1 0 Median 1.0812 0.93819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7987800 3562700 4425100 4944600 2268800 2675900 3043100 1293900 1749200 0 0 0 0 0 0 0 0 0 0 0 0 19186 2325 20000 100166;100167 101826;101827 101827 2 LDIISEDISELQK RLKVQDQMTKQHQTRLDIISEDISELQKNQ TRLDIISEDISELQKNQTTSVAKIAQYKRK R L D Q K N 0 0 0 2 0 1 2 0 0 3 2 1 0 0 0 2 0 0 0 0 0 0 13 0 1501.7876 Q7Z3B4 Q7Z3B4 351 363 NUP54 Nucleoporin p54 yes yes 2;3 0.00031274 77.379 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 1.2759 1.073 18.527 7 Median NaN NaN NaN 0 0 Median 0.97764 0.84232 NaN 1 0 Median 1.0312 1.0236 5.8987 2 0 Median 1.3971 1.1996 NaN 1 0 Median 1.5934 1.5362 NaN 1 0 Median 1.3198 1.1057 4.2443 2 0 Median 29746000 13916000 15829000 0 0 0 2740400 1198600 1541800 19216000 9576200 9639600 2495100 1004500 1490600 1023100 427120 595960 4271400 1709800 2561600 19187 3239 20001 100168;100169;100170;100171;100172;100173;100174 101828;101829;101830;101831;101832 101828 5 LDIKLDSEDKDK IMNFKKEETAKLIEKLDIKLDSEDKDKEGK IEKLDIKLDSEDKDKEGKPLLKAVMRRWLP K L D D K E 0 0 0 4 0 0 1 0 0 1 2 3 0 0 0 1 0 0 0 0 0 0 12 2 1417.73 P13639 P13639 319 330 EEF2 Elongation factor 2 yes yes 3 1.587E-06 101.89 By MS/MS By matching By MS/MS 2 1 1 1.025 1.0529 21.533 4 Median 1.0404 1.0529 17.275 2 0 Median 0.86321 0.84222 NaN 1 0 Median 1.1016 1.3438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14916000 6591700 8324700 11617000 4917100 6699700 820360 444330 376030 2479300 1230300 1249000 0 0 0 0 0 0 0 0 0 19188 1992 20002 100175;100176;100177;100178 101833;101834;101835;101836;101837;101838 101833 6 LDILDQER LLAHGHYASPEIKQKLDILDQERADLEKAW SPEIKQKLDILDQERADLEKAWVQRRMMLD K L D E R A 0 1 0 2 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1000.5189 A0A0D9SF54;Q13813 Q13813 1420 1427 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0024268 119.29 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.018 0.87067 16.442 4 Median NaN NaN NaN 0 0 Median 1.1014 0.89556 NaN 1 0 Median 0.70277 0.76593 NaN 1 0 Median 0.96339 0.84647 NaN 1 0 Median 1.0757 1.1288 NaN 1 0 Median NaN NaN NaN 0 0 Median 29874000 14349000 15525000 0 0 0 10060000 4071200 5988700 12856000 7195000 5661400 2933800 1400300 1533500 4023700 1682400 2341300 0 0 0 19189 264;2838 20003 100179;100180;100181;100182;100183 101839;101840;101841;101842 101839 4 LDILDTAGQEEFGAMR DSYTKICSVDGIPARLDILDTAGQEEFGAM DILDTAGQEEFGAMREQYMRAGHGFLLVFA R L D M R E 2 1 0 2 0 1 2 2 0 1 2 0 1 1 0 0 1 0 0 0 0 0 16 0 1764.8352 P62070;E9PK85;P10301 P10301 79 94 RRAS2;RRAS Ras-related protein R-Ras2;Ras-related protein R-Ras no no 2 9.0556E-10 102.4 By MS/MS By matching By matching By matching 1 2 1 1 1.1457 1.0701 14.708 5 Median 1.0241 0.96939 NaN 1 0 Median 1.2465 1.0624 20.762 2 0 Median 1.1457 1.0701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5822 1.2889 NaN 1 0 Median 11041000 5333000 5708100 7756800 3845300 3911500 2053100 953010 1100100 778270 350880 427390 0 0 0 0 0 0 452830 183740 269100 19190 2567;1936 20004 100184;100185;100186;100187;100188 101843;101844 101844 2 LDINTLTGEER QKPKQKRHRCRNPNKLDINTLTGEERVPVV NPNKLDINTLTGEERVPVVNKRNGKKMGGA K L D E R V 0 1 1 1 0 0 2 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 11 0 1259.6357 Q9P2D1 Q9P2D1 2636 2646 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.0059281 65.305 By MS/MS 1 0.72924 0.79683 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72924 0.79683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3337200 2068100 1269100 0 0 0 0 0 0 3337200 2068100 1269100 0 0 0 0 0 0 0 0 0 19191 4220 20005 100189 101845 101845 1 LDIQEALK LAFERKLDQTIMRKRLDIQEALKRPIKQKR QTIMRKRLDIQEALKRPIKQKRKLRIFISN R L D L K R 1 0 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 928.52295 Q96GM5;F8VZ70;F8VUB0;F8VW95 Q96GM5 166 173 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.0055542 75.109 By MS/MS By matching 1 1 1.2553 1.1642 19.816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0145 1.012 NaN 1 0 Median 1.5532 1.3393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7055900 2999100 4056800 0 0 0 0 0 0 5870800 2545900 3324900 1185100 453210 731880 0 0 0 0 0 0 19192 3659 20006 100190;100191 101846 101846 1 LDKAQIHDLVLVGGSTR RSTLEPVEKALRDAKLDKAQIHDLVLVGGS KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K L D T R I 1 1 0 2 0 1 0 2 1 1 3 1 0 0 0 1 1 0 0 2 0 0 17 1 1821.0108 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 327 343 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3;4 4.0514E-11 136.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 1 3 4 1.4248 1.3963 19.338 18 Median 1.4408 1.4384 24.217 5 0 Median 1.4338 1.316 3.1984 2 0 Median 1.409 1.5009 4.0627 3 0 Median 1.0009 0.91773 NaN 1 1 Median 1.3504 1.3766 15.178 3 0 Median 1.5535 1.3778 21.559 4 0 Median 719920000 302100000 417830000 597490000 252960000 344530000 7490800 2738400 4752300 74152000 29428000 44724000 1487900 757380 730540 32356000 13341000 19014000 6945000 2868300 4076700 19193 278 20007 100192;100193;100194;100195;100196;100197;100198;100199;100200;100201;100202;100203;100204;100205;100206;100207;100208;100209 101847;101848;101849;101850;101851;101852;101853;101854;101855;101856;101857;101858;101859;101860;101861;101862;101863;101864;101865;101866;101867 101851 21 LDKDIVALMTR CITFQPDLSKFKMEKLDKDIVALMTRRAYD KMEKLDKDIVALMTRRAYDLAGSCRGVKVM K L D T R R 1 1 0 2 0 0 0 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 11 1 1273.7064 Q02880;E9PCY5 Q02880 252 262 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 3 0.0001276 70.488 By MS/MS By MS/MS 3 1 0.95584 1.1186 24.655 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86931 1.0399 23.84 3 0 Median NaN NaN NaN 0 0 Median 1.1737 1.3279 NaN 1 0 Median NaN NaN NaN 0 0 Median 9382400 4426400 4956000 0 0 0 0 0 0 6048200 2862400 3185800 0 0 0 3334200 1564000 1770300 0 0 0 19194 2704 20008 100210;100211;100212;100213 101868;101869;101870;101871 101869 4 LDKSQIHDIVLVGGSTR RGTLDPVEKALRDAKLDKSQIHDIVLVGGS KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K L D T R I 0 1 0 2 0 1 0 2 1 2 2 1 0 0 0 2 1 0 0 2 0 0 17 1 1837.0058 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2 P11142 326 342 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3;4 5.7698E-31 200.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 3 3 1 8 3 1.1326 1.1399 14.569 25 Median 1.1925 1.2072 9.6652 7 0 Median 1.0279 0.94699 8.0553 3 0 Median 1.1004 1.1726 8.461 3 0 Median 1.1442 1.0491 NaN 1 0 Median 1.0529 1.1431 17.671 8 0 Median 1.2656 1.1399 18.614 3 0 Median 730010000 333690000 396330000 479620000 218540000 261090000 23284000 10972000 12311000 94039000 41713000 52326000 2124800 1031100 1093700 123730000 58184000 65547000 7209400 3251900 3957500 19195 1950 20009 100214;100215;100216;100217;100218;100219;100220;100221;100222;100223;100224;100225;100226;100227;100228;100229;100230;100231;100232;100233;100234;100235;100236;100237;100238 101872;101873;101874;101875;101876;101877;101878;101879;101880;101881;101882;101883;101884;101885;101886;101887;101888;101889;101890;101891;101892;101893;101894;101895;101896;101897;101898;101899;101900;101901;101902 101881 31 LDLAAYDQEGR QNKQVVPVSSHRNPRLDLAAYDQEGRRFDN RNPRLDLAAYDQEGRRFDNFSSLSIQWEST R L D G R R 2 1 0 2 0 1 1 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 11 0 1249.5939 Q8TEM1 Q8TEM1 787 797 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00017015 112.75 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0836 1.0399 48.392 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85412 0.91331 1.4699 2 0 Median 1.4571 1.2728 11.685 2 0 Median 0.34491 0.37854 NaN 1 0 Median 1.6651 1.3745 NaN 1 0 Median 45463000 23735000 21728000 0 0 0 0 0 0 40941000 21472000 19469000 2754600 1049800 1704800 1432400 1104700 327690 334760 108400 226370 19196 3477 20010 100239;100240;100241;100242;100243;100244 101903;101904;101905;101906;101907;101908 101905 6 LDLAGRDLTDYLMK VPIYEGYALPHAILRLDLAGRDLTDYLMKI RLDLAGRDLTDYLMKILTERGYSFTTTAER R L D M K I 1 1 0 3 0 0 0 1 0 0 4 1 1 0 0 0 1 0 1 0 0 0 14 1 1622.8338 P63267;P62736;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L4N8;A0A2R8YEA7;P68032;P68133;Q562R1 P63261 178 191 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;Beta-actin-like protein 2 no no 3 0.053898 14.084 By MS/MS By matching By MS/MS By matching 1 1 3 2 1.1473 1.2124 60.385 7 Median 1.1473 1.2293 NaN 1 0 Median 1.701 1.6109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0277 1.1162 33.476 3 0 Median 0.65051 0.59517 100.62 2 0 Median 22476000 10481000 11995000 11050000 5185300 5864800 375350 161190 214150 0 0 0 0 0 0 9283000 4362400 4920600 1767600 772370 995210 19197 2625;2630;2595;3035 20011 100245;100246;100247;100248;100249;100250;100251 101909;101910;101911 101911 3 LDLAGTLPGSK DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ PVQKLDLAGTLPGSKRQLQTPKEKAQALED K L D S K R 1 0 0 1 0 0 0 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 11 0 1070.5972 P46013 P46013 1198 1208 MKI67 Antigen KI-67 yes yes 2 0.00011196 123.63 By matching By MS/MS By MS/MS 1 2 3 0.82129 0.77231 21.554 6 Median NaN NaN NaN 0 0 Median 0.93296 0.87919 NaN 1 0 Median 0.78604 0.85676 22.373 2 0 Median 0.75255 0.63835 19.352 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30208000 16683000 13525000 0 0 0 1731300 886090 845230 24564000 13624000 10940000 3912700 2173300 1739400 0 0 0 0 0 0 19198 2335 20012 100252;100253;100254;100255;100256;100257 101912;101913;101914;101915;101916;101917;101918;101919 101913 8 LDLAGTLPGSKR DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ VQKLDLAGTLPGSKRQLQTPKEKAQALEDL K L D K R Q 1 1 0 1 0 0 0 2 0 0 3 1 0 0 1 1 1 0 0 0 0 0 12 1 1226.6983 P46013 P46013 1198 1209 MKI67 Antigen KI-67 yes yes 2;3 9.1248E-06 121.83 By MS/MS 4 1.0014 1.1784 21.215 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0014 1.1784 21.215 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45974000 22900000 23074000 0 0 0 0 0 0 45974000 22900000 23074000 0 0 0 0 0 0 0 0 0 19199 2335 20013 100258;100259;100260;100261 101920;101921;101922;101923 101923 4 LDLDLTADSQPPVFK VSGLMRKVPRVSLERLDLDLTADSQPPVFK LDLDLTADSQPPVFKVFPGSTTEDYNLIVI R L D F K V 1 0 0 3 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 1 0 0 15 0 1657.8563 Q13263;M0R0K9 Q13263 493 507 TRIM28 Transcription intermediary factor 1-beta yes no 2 3.3831E-09 98.353 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 6 3 2 2 0.84586 0.74453 26.203 15 Median 0.73996 0.71177 1.173 2 0 Median 0.81615 0.70778 30.189 6 0 Median 0.84586 0.91245 33.449 3 0 Median 0.84567 0.73245 2.3136 2 0 Median 0.98458 0.97412 14.821 2 0 Median NaN NaN NaN 0 0 Median 124980000 64730000 60252000 23116000 12446000 10669000 55758000 29565000 26193000 34294000 16810000 17484000 529030 267840 261190 11286000 5640200 5645300 0 0 0 19200 2802 20014 100262;100263;100264;100265;100266;100267;100268;100269;100270;100271;100272;100273;100274;100275;100276 101924;101925;101926;101927;101928;101929;101930;101931;101932;101933;101934;101935;101936;101937;101938;101939 101927 16 LDLEAWFPGSGAFR VNIVSGSLNHAASKKLDLEAWFPGSGAFRE KLDLEAWFPGSGAFRELVSCSNCTDYQARR K L D F R E 2 1 0 1 0 0 1 2 0 0 2 0 0 2 1 1 0 1 0 0 0 0 14 0 1564.7674 Q5T5C7;P49591 Q5T5C7 377 390 SARS Serine--tRNA ligase, cytoplasmic yes no 2 0.011177 33.409 By matching By MS/MS By matching 1 1 1 1.0032 1.0329 13.95 3 Plateau 0.99453 0.99597 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.004 1.0476 NaN 1 0 Median 0.91265 0.80541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1574900 755600 819260 665050 330420 334630 0 0 0 761710 345270 416440 148090 79904 68187 0 0 0 0 0 0 19201 2387 20015 100277;100278;100279 101940 101940 1 LDLGEDYPSGK ______________________________ KRHRLDLGEDYPSGKKRAGTDGKDRDRDRD R L D G K K 0 0 0 2 0 0 1 2 0 0 2 1 0 0 1 1 0 0 1 0 0 0 11 0 1192.5612 O43143 O43143 7 17 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00065281 73.067 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2818 1.3353 48.043 5 Median 0.68042 0.68634 NaN 1 0 Median 1.2818 1.1281 NaN 1 0 Median 1.2721 1.3984 6.5317 2 2 Median 3.0035 2.6009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25938000 9920100 16018000 3618800 1954300 1664500 2963600 1339100 1624500 12709000 5152700 7555900 6646800 1474000 5172800 0 0 0 0 0 0 19202 1553 20016 100280;100281;100282;100283;100284 101941;101942;101943;101944;101945 101945 5 LDLIAQQMMPEVR NGDRKIKVSNTLESRLDLIAQQMMPEVRGA SRLDLIAQQMMPEVRGALFGANANRKFLD_ R L D V R G 1 1 0 1 0 2 1 0 0 1 2 0 2 0 1 0 0 0 0 1 0 0 13 0 1542.7898 P36543 P36543 200 212 ATP6V1E1 V-type proton ATPase subunit E 1 yes yes 2 5.2583E-06 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.90598 0.85046 12.192 5 Median 0.90598 0.8474 NaN 1 0 Median 1.1302 0.95263 1.3061 2 0 Median 0.72992 0.70756 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86181 0.85046 NaN 1 0 Median NaN NaN NaN 0 0 Median 21136000 10514000 10622000 10881000 5618600 5262600 5547000 2536500 3010500 1856000 1086900 769170 0 0 0 2851900 1272400 1579500 0 0 0 19203 2258 20017 100285;100286;100287;100288;100289 101946;101947;101948;101949;101950;101951;101952;101953 101947 8 LDLITVEAFKPILSTR KIPAILYLCYTDVMKLDLITVEAFKPILST DLITVEAFKPILSTRSLKGLVKNIPQSTEI K L D T R S 1 1 0 1 0 0 1 0 0 2 3 1 0 1 1 1 2 0 0 1 0 0 16 1 1815.0506 O95456 O95456 242 257 PSMG1 Proteasome assembly chaperone 1 yes yes 2;3 1.4318E-06 96.64 By matching By MS/MS 1 2 1.0036 0.89399 12.393 3 Median 1.0036 0.99162 NaN 1 0 Median 0.93078 0.83223 10.123 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18340000 9234000 9106100 1242200 529410 712780 17098000 8704500 8393400 0 0 0 0 0 0 0 0 0 0 0 0 19204 1774 20018 100290;100291;100292 101954;101955;101956 101955 3 LDLLEDR AEGPYKIILTARPFRLDLLEDRSLLLSVNA ILTARPFRLDLLEDRSLLLSVNARGLLEFE R L D D R S 0 1 0 2 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 872.46035 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 158 164 GANAB Neutral alpha-glucosidase AB no no 2 0.0013251 132.09 By MS/MS By MS/MS By matching 4 3 1 1.2232 1.0731 27.502 8 Median 0.96617 0.91929 21.727 4 0 Median 1.33 1.1081 5.2786 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7852 1.9067 NaN 1 0 Median NaN NaN NaN 0 0 Median 99998000 43733000 56265000 57265000 25862000 31403000 41380000 17393000 23987000 0 0 0 0 0 0 1353300 478130 875180 0 0 0 19205 2896;951 20019 100293;100294;100295;100296;100297;100298;100299;100300 101957;101958;101959;101960;101961;101962 101958 6 LDLLGNLPGSK EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ PVEKLDLLGNLPGSKRRPQTPKEKAKALED K L D S K R 0 0 1 1 0 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 11 0 1125.6394 P46013 P46013 1928 1938 MKI67 Antigen KI-67 yes no 2 0.00094301 61.78 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 3 0.95636 0.97538 19.776 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9991 1.0925 6.2567 4 0 Median 1.0444 0.93794 17.734 6 0 Median 0.93691 0.97402 9.279 2 0 Median 0.83963 0.7068 11.537 3 0 Median 185940000 92548000 93391000 0 0 0 0 0 0 155760000 77162000 78601000 8807400 4486300 4321100 18614000 9385300 9228300 2755000 1513900 1241100 19206 2335 20020 100301;100302;100303;100304;100305;100306;100307;100308;100309;100310;100311;100312;100313;100314;100315 101963;101964;101965;101966;101967;101968;101969;101970;101971;101972;101973;101974 101963 12 LDLLGNLPGSKR EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ VEKLDLLGNLPGSKRRPQTPKEKAKALEDL K L D K R R 0 1 1 1 0 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 12 1 1281.7405 P46013 P46013 1928 1939 MKI67 Antigen KI-67 yes no 3 0.00014716 67.456 By MS/MS 2 0.93103 1.0916 11.656 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93103 1.0916 11.656 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7340200 3983500 3356700 0 0 0 0 0 0 7340200 3983500 3356700 0 0 0 0 0 0 0 0 0 19207 2335 20021 100316;100317 101975;101976 101975 2 LDLLLEK KQQEALEEQAALEPKLDLLLEKTKELQKLI EQAALEPKLDLLLEKTKELQKLIEADISKR K L D E K T 0 0 0 1 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 842.51132 Q96JB5;J3QRM1 Q96JB5 472 478 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 2 0.034219 47.916 By MS/MS By matching By matching By matching 1 2 1 1 1.1652 1.0664 11.33 5 Median 0.94691 0.91608 NaN 1 0 Median 1.1253 1.0166 6.7554 2 0 Median NaN NaN NaN 0 0 Median 1.2732 1.1177 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4133 1.2187 NaN 1 0 Median 2533500 1249000 1284500 1673900 844800 829100 663670 325260 338410 0 0 0 108170 45397 62778 0 0 0 87780 33551 54229 19208 3684 20022 100318;100319;100320;100321;100322 101977 101977 1 LDLLMQK ILHKKHTKKMDKTAKLDLLMQKIGMRGKPK KKMDKTAKLDLLMQKIGMRGKPKVIDLTRN K L D Q K I 0 0 0 1 0 1 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 7 0 859.48372 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 492 498 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.025249 54.525 By MS/MS 1 1.02 1.0917 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.02 1.0917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2215800 1239800 975990 0 0 0 0 0 0 2215800 1239800 975990 0 0 0 0 0 0 0 0 0 19209 1118 20023 100323 101978 101978 1 LDLMDEGTDAR EVDPQGLRTIGVITKLDLMDEGTDARDVLE VITKLDLMDEGTDARDVLENKLLPLRRGYI K L D A R D 1 1 0 3 0 0 1 1 0 0 2 0 1 0 0 0 1 0 0 0 0 0 11 0 1234.55 P50570;A0A1B0GUX5 P50570 207 217 DNM2 Dynamin-2 no no 2 0.00013836 111.65 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.036 0.92461 15.224 5 Median 1.2236 1.1932 NaN 1 0 Median 1.0471 0.92461 NaN 1 0 Median 1.036 1.0962 NaN 1 0 Median 0.9983 0.85376 1.0945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33848000 17118000 16730000 2987200 1378500 1608700 1315500 676640 638880 25326000 12946000 12380000 4218700 2116600 2102100 0 0 0 0 0 0 19210 2417 20024 100324;100325;100326;100327;100328 101979;101980;101981;101982 101981 4 LDLPGNLPGSK DEKDMKAFMGTPVQKLDLPGNLPGSKRWPQ PVQKLDLPGNLPGSKRWPQTPKEKAQALED K L D S K R 0 0 1 1 0 0 0 2 0 0 3 1 0 0 2 1 0 0 0 0 0 0 11 0 1109.6081 P46013 P46013 2290 2300 MKI67 Antigen KI-67 yes yes 2 0.00014702 83.862 By MS/MS By MS/MS By MS/MS 2 5 1 0.78351 0.75285 29.265 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73513 0.79688 6.2455 2 0 Median 0.78563 0.74121 14.801 5 0 Median 1.4249 1.492 NaN 1 0 Median NaN NaN NaN 0 0 Median 58851000 31290000 27561000 0 0 0 0 0 0 46235000 25126000 21108000 6342400 3700200 2642200 6274000 2463300 3810700 0 0 0 19211 2335 20025 100329;100330;100331;100332;100333;100334;100335;100336 101983;101984;101985;101986;101987;101988;101989;101990 101983 8 LDLPPEKPLTSSLAK ENEAEKDLQCHAPVRLDLPPEKPLTSSLAK LDLPPEKPLTSSLAKQEEVEQTPLQEALNQ R L D A K Q 1 0 0 1 0 0 1 0 0 0 4 2 0 0 3 2 1 0 0 0 0 0 15 1 1607.9134 Q9NPI1 Q9NPI1 113 127 BRD7 Bromodomain-containing protein 7 yes yes 3 0.018099 22.475 By MS/MS 1 0.54404 0.61151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54404 0.61151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5650600 3551700 2098800 0 0 0 0 0 0 5650600 3551700 2098800 0 0 0 0 0 0 0 0 0 19212 4053 20026 100337 101991 101991 1 LDLQFQAIK QTAVRPGSPSTSTMRLDLQFQAIKIISIIV STSTMRLDLQFQAIKIISIIVKNDDSWLAS R L D I K I 1 0 0 1 0 2 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1074.6073 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1617 1625 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00056678 113.7 By MS/MS 1 0.96334 1.0295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96334 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12942000 6379500 6562900 0 0 0 0 0 0 12942000 6379500 6562900 0 0 0 0 0 0 0 0 0 19213 991 20027 100338 101992;101993 101992 2 LDLQQGQNLLQGLSK CKENGGYTGCPFPAKLDLQQGQNLLQGLSK LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP K L D S K L 0 0 1 1 0 4 0 2 0 0 5 1 0 0 0 1 0 0 0 0 0 0 15 0 1653.905 Q9HCE1;Q5JR04 Q9HCE1 953 967 MOV10 Putative helicase MOV-10 yes no 2 0.00029892 68.069 By MS/MS By matching By matching 1 1 1 0.94816 0.94043 35.41 3 Median 0.94816 0.94043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85446 0.84576 NaN 1 0 Median 1.9433 1.6354 NaN 1 0 Median 4423700 1875400 2548300 2544900 1265100 1279800 0 0 0 0 0 0 0 0 0 300730 161380 139360 1578100 448980 1129100 19214 4029 20028 100339;100340;100341 101994;101995 101994 2 LDLQYAK LSPATRGAYRDCLGRLDLQYAKLLNSSKAR AYRDCLGRLDLQYAKLLNSSKARLRSLESL R L D A K L 1 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 849.45962 Q15149;H0YDN1;E9PMV1 Q15149 734 740 PLEC Plectin yes no 2 0.016985 67.035 By MS/MS 2 1.0107 0.85523 27.019 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0107 0.85523 27.019 2 0 Median 4563400 2024000 2539400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4563400 2024000 2539400 19215 2933 20029 100342;100343 101996 101996 1 LDLRDDKDTIEK RHHCPNTPIILVGTKLDLRDDKDTIEKLKE GTKLDLRDDKDTIEKLKEKKLTPITYPQGL K L D E K L 0 1 0 4 0 0 1 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 12 2 1459.7518 P63000;B1AH77;B1AH80;P15153;B1AH78 P63000 117 128 RAC1;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2 yes no 2;3 1.7522E-06 99.531 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1.0317 1.0625 25.827 9 Median 0.99785 1.0625 28.353 3 0 Plateau 1.2044 1.1344 2.747 2 0 Median 0.82664 0.92552 31.332 2 0 Median 1.1719 0.96665 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8474 1.5058 NaN 1 0 Median 82968000 40268000 42700000 45799000 23052000 22747000 13168000 6110100 7058100 17644000 8483600 9160700 4784500 2101600 2682900 0 0 0 1572000 520970 1051000 19216 2615 20030 100344;100345;100346;100347;100348;100349;100350;100351;100352 101997;101998;101999;102000;102001;102002;102003;102004;102005;102006;102007;102008;102009 102004 13 LDLSHEFSLVAPNTEANSFESK DPIARPSEINFDGIKLDLSHEFSLVAPNTE SLVAPNTEANSFESKDYLQVCLRIRPFTQS K L D S K D 2 0 2 1 0 0 3 0 1 0 3 1 0 2 1 4 1 0 0 1 0 0 22 0 2434.1652 Q96Q89;A0A0A0MSJ5 Q96Q89 35 56 KIF20B Kinesin-like protein KIF20B;Kinesin-like protein yes no 3 0.063962 6.5598 By MS/MS 1 0.93125 1.038 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93125 1.038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2664400 1339200 1325200 0 0 0 0 0 0 2664400 1339200 1325200 0 0 0 0 0 0 0 0 0 19217 3717 20031 100353 102010 102010 1 LDLSNNDISSLPYSLGNLHLK KSVPDEIILLRSLERLDLSNNDISSLPYSL DISSLPYSLGNLHLKFLALEGNPLRTIRRE R L D L K F 0 0 3 2 0 0 0 1 1 1 6 1 0 0 1 4 0 0 1 0 0 0 21 0 2312.2012 Q9H9A6 Q9H9A6 317 337 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 3 0.0088676 23.447 By MS/MS By MS/MS 1 1 1.359 1.3057 79.72 2 Median 0.77175 0.74306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.393 2.2943 NaN 1 1 Median NaN NaN NaN 0 0 Median 4709800 2097000 2612800 2819700 1643300 1176400 0 0 0 0 0 0 0 0 0 1890000 453670 1436400 0 0 0 19218 3996 20032 100354;100355 102011;102012 102011 2 LDLSSLAYSGK HELLAAELTKALKTKLDLSSLAYSGKDA__ LKTKLDLSSLAYSGKDA_____________ K L D G K D 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 3 0 0 1 0 0 0 11 0 1152.6027 C9JAX1;Q16595 C9JAX1 123 133 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes no 2 0.008785 39.848 By MS/MS 2 1.2687 1.1398 17.523 2 Median NaN NaN NaN 0 0 Median 1.2687 1.1398 17.523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2813200 1262800 1550500 0 0 0 2813200 1262800 1550500 0 0 0 0 0 0 0 0 0 0 0 0 19219 685 20033 100356;100357 102013 102013 1 LDLTEKDYEILFK VKYLESAGARVVPVRLDLTEKDYEILFKSI VRLDLTEKDYEILFKSINGILFPGGSVDLR R L D F K S 0 0 0 2 0 0 2 0 0 1 3 2 0 1 0 0 1 0 1 0 0 0 13 1 1625.8552 Q92820 Q92820 76 88 GGH Gamma-glutamyl hydrolase yes yes 3 0.0082464 27.862 By matching By MS/MS 1 2 1.1946 1.3018 14.355 3 Median NaN NaN NaN 0 0 Median 1.6229 1.4717 NaN 1 0 Median 1.1226 1.1996 11.558 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7456600 3401900 4054600 0 0 0 1727500 674380 1053100 5729000 2727600 3001500 0 0 0 0 0 0 0 0 0 19220 3560 20034 100358;100359;100360 102014 102014 1 LDLTENLTGSK EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ PVQKLDLTENLTGSKRRPQTPKEEAQALED K L D S K R 0 0 1 1 0 0 1 1 0 0 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1189.619 P46013 P46013 1320 1330 MKI67 Antigen KI-67 yes no 2 4.286E-09 121.83 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1.064 1.0261 19.779 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.07 1.1378 4.7583 3 1 Median 0.94173 0.84865 11.328 3 0 Median NaN NaN NaN 0 0 Median 0.84714 0.72588 NaN 1 0 Median 161100000 76474000 84628000 0 0 0 0 0 0 145560000 68932000 76630000 12960000 6204000 6756300 0 0 0 2579100 1337900 1241200 19221 2335 20035 100361;100362;100363;100364;100365;100366;100367;100368;100369;100370 102015;102016;102017;102018;102019;102020;102021;102022;102023;102024;102025;102026;102027 102016 13 LDLTENLTGSKR EEKDIIIFVGTPVQKLDLTENLTGSKRRPQ VQKLDLTENLTGSKRRPQTPKEEAQALEDL K L D K R R 0 1 1 1 0 0 1 1 0 0 3 1 0 0 0 1 2 0 0 0 0 0 12 1 1345.7201 P46013 P46013 1320 1331 MKI67 Antigen KI-67 yes no 2;3 1.1832E-06 123.63 By MS/MS 3 1.2833 1.4917 3.9888 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2833 1.4917 3.9888 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32224000 14062000 18162000 0 0 0 0 0 0 32224000 14062000 18162000 0 0 0 0 0 0 0 0 0 19222 2335 20036 100371;100372;100373 102028;102029;102030 102028 2 LDMEIDGQK IHENASQPEVLVPIRLDMEIDGQKLRDAFT VLVPIRLDMEIDGQKLRDAFTWNMNEKLMT R L D Q K L 0 0 0 2 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 G5E975;B5MCL5;Q12824;A0A0G2JRV3;C9JTA6;A0A0G2JSE9 Q12824 191 199 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 0.0004404 127.46 By MS/MS By MS/MS 2 3 0.89254 0.87219 15.505 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86816 0.86741 0.77809 2 0 Median 1.2333 1.0896 21.263 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48053000 24113000 23941000 0 0 0 0 0 0 30179000 16165000 14014000 17875000 7948000 9926700 0 0 0 0 0 0 19223 1128;2761 20037 100374;100375;100376;100377;100378 102031;102032;102033;102034;102035 102032 5 LDMEIER LNLHSYSNLPIWVNKLDMEIERILGVRLQA NLPIWVNKLDMEIERILGVRLQAGLRAWTQ K L D E R I 0 1 0 1 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 904.43242 Q14204 Q14204 903 909 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.021536 81.784 By MS/MS By MS/MS By MS/MS 2 2 2 1.0892 0.87193 11.005 3 Median NaN NaN NaN 0 0 Median 1.0892 0.87193 NaN 1 1 Median 0.74156 0.7793 NaN 1 1 Median 1.1146 0.97114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41436000 24583000 16852000 0 0 0 17952000 8697100 9254600 18576000 13520000 5055700 4908300 2366500 2541900 0 0 0 0 0 0 19224 2865 20038 100379;100380;100381;100382;100383;100384 102036;102037;102038;102039;102040;102041 102038 6 LDMSEFQER TAKYMHKDAKKGFIRLDMSEFQERHEVAKF KKGFIRLDMSEFQERHEVAKFIGSPPGYVG R L D E R H 0 1 0 1 0 1 2 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 9 0 1153.5074 H0YGM0;Q9H078 H0YGM0 414 422 CLPB Caseinolytic peptidase B protein homolog no no 2 0.0034093 65.305 By matching By matching By MS/MS By matching By matching 1 2 1 2 1 1.3492 1.1693 15.651 7 Median 1.0679 1.0247 NaN 1 0 Median 1.3639 1.1923 2.7537 2 0 Median 1.0334 1.0566 NaN 1 0 Median 1.6289 1.4 17.461 2 0 Median NaN NaN NaN 0 0 Median 1.1523 1.0065 NaN 1 0 Median 18165000 8005500 10160000 7505800 3421000 4084800 3001500 1225400 1776200 6312000 2791800 3520300 955100 360690 594410 0 0 0 390650 206700 183950 19225 1181 20039 100385;100386;100387;100388;100389;100390;100391 102042 102042 1 LDMTPYTEDFLMGK MMKEKVNTHFSFPLRLDMTPYTEDFLMGKS RLDMTPYTEDFLMGKSERKEGFKEVSDHSK R L D G K S 0 0 0 2 0 0 1 1 0 0 2 1 2 1 1 0 2 0 1 0 0 0 14 0 1659.7524 Q70CQ2;A0A0C4DG73 Q70CQ2 2113 2126 USP34 Ubiquitin carboxyl-terminal hydrolase 34;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.058909 34.887 By MS/MS 1 0.75452 0.74524 NaN 1 Median 0.75452 0.74524 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2091800 1190800 901010 2091800 1190800 901010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19226 3207 20040 100392 102043 102043 1 LDMVPHLETDMMQGGVYGSGGER GSASADSVLSRINQRLDMVPHLETDMMQGG TDMMQGGVYGSGGERYDSYESCDSRAVLSE R L D E R Y 0 1 0 2 0 1 2 5 1 0 2 0 3 0 1 1 1 0 1 2 0 0 23 0 2478.0978 Q9ULX6;M0R1Y5;M0R010;M0QYT7;V9GZ50 Q9ULX6 99 121 AKAP8L A-kinase anchor protein 8-like yes no 3 0.00012939 27.274 By MS/MS By matching By matching 1 1 1 0.81588 0.81519 2.4559 3 Median 0.81588 0.8073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99071 0.81519 NaN 1 0 Median 0.7968 0.84577 NaN 1 0 Median NaN NaN NaN 0 0 Median 4339600 2346900 1992700 1949600 930210 1019400 0 0 0 0 0 0 93946 50786 43160 2296000 1365900 930100 0 0 0 19227 4331 20041 100393;100394;100395 102044;102045 102044 2 LDNFLGEVR RALKEKTLLPEDSQKLDNFLGEVRDKWDTV PEDSQKLDNFLGEVRDKWDTVCGKSVERQH K L D V R D 0 1 1 1 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1061.5506 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6732 6740 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00052905 103.56 By MS/MS By MS/MS 1 1 0.77051 0.7884 17.011 2 Median 0.71318 0.69905 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.83245 0.88917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17340000 10514000 6826000 11206000 6935000 4270800 0 0 0 6134300 3579100 2555300 0 0 0 0 0 0 0 0 0 19228 1220 20042 100396;100397 102046;102047 102046 2 LDNIFLTR GVQRLMQEHKLKVARLDNIFLTRMHWSNVG HKLKVARLDNIFLTRMHWSNVGGLSGMILT R L D T R M 0 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 8 0 990.54983 Q9BQ52;G5E9D5;V9GZ72;J3QRS2;V9GYU5;J3QL08;J3QLK4;V9GYS7 Q9BQ52 105 112 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.0071604 68.224 By MS/MS By MS/MS By matching 3 1 1 1.2118 1.1483 9.5183 5 Median 1.1905 1.1483 10.092 3 0 Median 1.2118 1.0474 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3569 1.1545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15358000 6610900 8747300 8238400 3522300 4716200 6635100 2885800 3749300 0 0 0 484740 202850 281890 0 0 0 0 0 0 19229 3782 20043 100398;100399;100400;100401;100402 102048;102049;102050 102048 3 LDNLVAILDINR EGSVWEAMAFASIYKLDNLVAILDINRLGQ IYKLDNLVAILDINRLGQSDPAPLQHQMDI K L D N R L 1 1 2 2 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 1 0 0 12 0 1367.7773 P29401;A0A0B4J1R6;E9PFF2 P29401 175 186 TKT Transketolase yes no 2 5.0931E-06 100.72 By MS/MS By MS/MS By MS/MS 1 5 1 1.0788 0.94313 15.263 7 Median 1.0011 0.94313 NaN 1 0 Median 1.1736 0.99356 14.566 5 0 Median 0.77893 0.81066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146390000 69862000 76524000 32076000 15509000 16567000 113310000 53803000 59506000 1000900 549590 451340 0 0 0 0 0 0 0 0 0 19230 2173 20044 100403;100404;100405;100406;100407;100408;100409 102051;102052;102053;102054;102055;102056;102057;102058;102059;102060;102061;102062;102063 102058 13 LDNMLLAEGVAGPEK RSSQEEEPVDPQLMRLDNMLLAEGVAGPEK LDNMLLAEGVAGPEKGGGSAAAAAAAAASG R L D E K G 2 0 1 1 0 0 2 2 0 0 3 1 1 0 1 0 0 0 0 1 0 0 15 0 1555.7916 H0YKH1;A0A087X0P4;H0YLF5;A0A0A0MTI0;P40424;H0YLD4;H0YLT4;H0YLB0;F8WA05;H0YLM3;P40425 P40425 118 132 PBX1;PBX2 Pre-B-cell leukemia transcription factor 1;Pre-B-cell leukemia transcription factor 2 no no 2 3.0554E-09 99.5 By MS/MS By matching By matching 4 2 1 0.84293 0.79753 40.939 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64537 0.67169 26.817 4 1 Median 0.99635 0.86638 11.711 2 0 Median 1.4299 1.681 NaN 1 0 Median NaN NaN NaN 0 0 Median 37150000 23066000 14084000 0 0 0 0 0 0 34775000 22017000 12758000 1374800 693250 681550 999810 355850 643950 0 0 0 19231 2286;108 20045;20046 100410;100411;100412;100413;100414;100415;100416 102064;102065;102066;102067 102064 41 4 LDNNWGREER RFNENNRRVIVCNTKLDNNWGREERQSVFP VCNTKLDNNWGREERQSVFPFESGKPFKIQ K L D E R Q 0 2 2 1 0 0 2 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 10 1 1287.5956 P17931;G3V3R6 P17931 177 186 LGALS3 Galectin-3;Galectin yes no 3 0.063389 15.144 By matching By matching By MS/MS 1 1 1 1.2189 1.1374 22.717 3 Plateau 0.99605 1.0723 NaN 1 0 Median 0.81223 0.74762 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2189 1.1374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1829100 894200 934920 546640 270860 275780 529350 259680 269670 0 0 0 753130 363660 389470 0 0 0 0 0 0 19232 2049 20047 100417;100418;100419 102068 102068 1 LDNTLGGTSEVIHR KKLSRLSAEEQAKFRLDNTLGGTSEVIHRK RLDNTLGGTSEVIHRKALQRIYADKAADII R L D H R K 0 1 1 1 0 0 1 2 1 1 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1510.774 Q96ST3 Q96ST3 653 666 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.0001647 66.285 By MS/MS By MS/MS 1 1 0.86726 0.95367 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86726 0.95367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10262000 5857700 4404200 0 0 0 0 0 0 10262000 5857700 4404200 0 0 0 0 0 0 0 0 0 19233 3737 20048 100420;100421 102069;102070 102070 2 LDNTLGGTSEVIHRK KKLSRLSAEEQAKFRLDNTLGGTSEVIHRK LDNTLGGTSEVIHRKALQRIYADKAADIID R L D R K A 0 1 1 1 0 0 1 2 1 1 2 1 0 0 0 1 2 0 0 1 0 0 15 1 1638.8689 Q96ST3 Q96ST3 653 667 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.0017289 33.301 By MS/MS 1 0.83439 0.94936 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83439 0.94936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378300 1142700 1235600 0 0 0 0 0 0 2378300 1142700 1235600 0 0 0 0 0 0 0 0 0 19234 3737 20049 100422 102071 102071 1 LDNVPHTPSSYIETLPK QVMQNPRVLAALQERLDNVPHTPSSYIETL NVPHTPSSYIETLPKAVKRRINALKQLQVR R L D P K A 0 0 1 1 0 0 1 0 1 1 2 1 0 0 3 2 2 0 1 1 0 0 17 0 1909.9785 Q99733;C9J6D1;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKI2;E9PP22 Q99733 45 61 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2;3 1.013E-05 81.565 By MS/MS By matching By MS/MS By MS/MS 3 2 1 3 0.64729 0.60554 24.399 9 Median 0.63429 0.5907 2.0154 3 0 Median 0.8247 0.72332 15.106 2 0 Median 0.63555 0.61438 NaN 1 1 Median 0.70599 0.60554 43.309 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95189000 57295000 37894000 70685000 42409000 28276000 5359800 2986000 2373900 12301000 7797900 4503100 6842700 4101500 2741200 0 0 0 0 0 0 19235 3766 20050 100423;100424;100425;100426;100427;100428;100429;100430;100431 102072;102073;102074;102075;102076;102077;102078;102079 102074 8 LDPELHLDIK TVKILITTVPPNLRKLDPELHLDIKVLQSA PNLRKLDPELHLDIKVLQSALAAIRHARWF K L D I K V 0 0 0 2 0 0 1 0 1 1 3 1 0 0 1 0 0 0 0 0 0 0 10 0 1191.6499 B4DY09;Q12905 B4DY09 149 158 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.010046 44.425 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.82343 0.78093 23.366 4 Median NaN NaN NaN 0 0 Median 0.83058 0.71227 NaN 1 0 Median 0.72531 0.74848 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81634 0.81479 NaN 1 0 Median 1.4339 1.1924 NaN 1 0 Median 43821000 25176000 18645000 0 0 0 4165600 2160300 2005300 31210000 19321000 11889000 0 0 0 5956800 3044200 2912600 2489200 650650 1838600 19236 609 20051 100432;100433;100434;100435 102080;102081 102080 2 LDPETLESLGLIK LACLYLVSDTVLKERLDPETLESLGLIKQS ERLDPETLESLGLIKQSQQFNQKSVKIKTK R L D I K Q 0 0 0 1 0 0 2 1 0 1 4 1 0 0 1 1 1 0 0 0 0 0 13 0 1426.7919 Q8NI27;A0A0C4DG98 Q8NI27 127 139 THOC2 THO complex subunit 2 yes no 2 5.2583E-06 97.456 By matching By matching By MS/MS By matching By matching 1 1 2 2 2 0.98058 0.887 22.626 8 Median 1.3375 1.2689 NaN 1 0 Median 0.9645 0.85491 NaN 1 0 Median 0.8229 0.89947 6.7933 2 0 Median 0.99305 0.87209 7.2179 2 0 Median NaN NaN NaN 0 0 Median 1.3615 1.1318 42.398 2 0 Median 29553000 15352000 14202000 868950 358660 510290 7403700 3638600 3765000 19300000 10421000 8878900 755630 359720 395910 0 0 0 1225600 574150 651440 19237 3448 20052 100436;100437;100438;100439;100440;100441;100442;100443 102082;102083;102084;102085;102086;102087 102084 6 LDPFADGGK EYKKHRRTMIISPERLDPFADGGKTPDPKM IISPERLDPFADGGKTPDPKMNARTYMDVM R L D G K T 1 0 0 2 0 0 0 2 0 0 1 1 0 1 1 0 0 0 0 0 0 0 9 0 918.4447 O75533 O75533 133 141 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.020024 45.972 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.93603 0.88497 19.55 4 Median NaN NaN NaN 0 0 Median 1.1752 0.99683 NaN 1 1 Median 0.62975 0.6803 NaN 1 0 Median 1.2012 1.0219 NaN 1 0 Median 0.74555 0.78565 NaN 1 0 Median NaN NaN NaN 0 0 Median 15104000 6833500 8270100 0 0 0 7447800 2904600 4543200 2484300 1183300 1301000 2212900 1002100 1210800 2958600 1743500 1215100 0 0 0 19238 1683 20053 100444;100445;100446;100447 102088;102089;102090;102091 102088 4 LDPFADGGKTPDPK EYKKHRRTMIISPERLDPFADGGKTPDPKM RLDPFADGGKTPDPKMNARTYMDVMREQHL R L D P K M 1 0 0 3 0 0 0 2 0 0 1 2 0 1 3 0 1 0 0 0 0 0 14 1 1456.7198 O75533 O75533 133 146 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 0.00076955 61.435 By MS/MS By matching By MS/MS 2 1 2 0.64306 0.74886 8.6555 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6826 0.79331 8.154 2 0 Median 0.81315 0.77458 NaN 1 0 Median 0.63463 0.6855 0.71766 2 0 Median NaN NaN NaN 0 0 Median 61851000 36045000 25806000 0 0 0 0 0 0 36804000 21306000 15499000 761900 452260 309650 24285000 14287000 9998200 0 0 0 19239 1683 20054 100448;100449;100450;100451;100452 102092;102093;102094;102095;102096;102097 102094 6 LDPGAVSDVPEAIK KNTEAIGNEVTRLVRLDPGAVSDVPEAIKF RLDPGAVSDVPEAIKFLVTWHTIDADAPEL R L D I K F 2 0 0 2 0 0 1 1 0 1 1 1 0 0 2 1 0 0 0 2 0 0 14 0 1409.7402 P42356 P42356 1578 1591 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 2 0.038314 39.266 By MS/MS 1 0.43437 0.41544 NaN 1 Median 0.43437 0.41544 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2901700 2074400 827320 2901700 2074400 827320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19240 2311 20055 100453 102098 102098 1 LDPGLALGPGER CGAPLSLVDLAGSERLDPGLALGPGERERL SERLDPGLALGPGERERLRETQAINSSLST R L D E R E 1 1 0 1 0 0 1 3 0 0 3 0 0 0 2 0 0 0 0 0 0 0 12 0 1193.6404 Q9BW19;A0A087X1W5 Q9BW19 572 583 KIFC1 Kinesin-like protein KIFC1;Kinesin-like protein yes no 2 0.0036071 68.893 By MS/MS By MS/MS By MS/MS By matching 5 2 6 3 0.83612 0.8483 19.648 16 Median 0.96027 0.89944 27.309 5 0 Median 1.0957 0.93172 6.5828 2 0 Median 0.73945 0.72846 17.266 6 2 Median NaN NaN NaN 0 0 Median 0.93619 0.99495 15.923 3 0 Plateau NaN NaN NaN 0 0 Median 752380000 351560000 400830000 423660000 200830000 222830000 163360000 75236000 88120000 157480000 71116000 86365000 0 0 0 7889500 4374400 3515200 0 0 0 19241 3860 20056 100454;100455;100456;100457;100458;100459;100460;100461;100462;100463;100464;100465;100466;100467;100468;100469 102099;102100;102101;102102;102103;102104 102101 6 LDPGLIMEQVK EGGFGSDFGGSGSGKLDPGLIMEQVKVQIA GSGKLDPGLIMEQVKVQIAVANAQELLQRM K L D V K V 0 0 0 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1241.669 Q9Y5L4 Q9Y5L4 17 27 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 2 0.00017198 79.489 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.78362 0.73013 14.932 6 Median 0.67806 0.62453 14.059 2 0 Median 0.94712 0.79127 NaN 1 0 Median 0.83191 0.79608 4.1972 2 0 Median 0.76214 0.61702 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46154000 25618000 20536000 15935000 9034400 6900700 2095000 1133800 961210 25127000 13662000 11465000 2997300 1788600 1208700 0 0 0 0 0 0 19242 4462 20057;20058 100470;100471;100472;100473;100474;100475 102105;102106;102107;102108;102109 102107 1991 5 LDPGSEETQTLVR SPDWQVDYESYTWRKLDPGSEETQTLVREY RKLDPGSEETQTLVREYFSWEGAFQHVGKA K L D V R E 0 1 0 1 0 1 2 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1443.7205 P26641 P26641 402 414 EEF1G Elongation factor 1-gamma yes yes 2 6.8856E-16 180.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 7 1 3 1.055 0.96688 62.739 18 Median 3.5152 3.2167 NaN 1 1 Median 3.9096 3.2684 NaN 1 1 Median 1.0745 1.1225 57.389 5 2 Median 0.95298 0.81982 27.576 7 3 Median 1.3773 1.3697 NaN 1 1 Median 0.64119 0.49955 53.759 3 2 Median 1704300000 720650000 983640000 170950000 22857000 148090000 89649000 14775000 74875000 354780000 162850000 191940000 1035100000 495500000 539580000 27415000 11431000 15985000 26410000 13241000 13168000 19243 2149 20059 100476;100477;100478;100479;100480;100481;100482;100483;100484;100485;100486;100487;100488;100489;100490;100491;100492;100493 102110;102111;102112;102113;102114;102115;102116;102117;102118;102119;102120;102121;102122;102123;102124;102125;102126;102127;102128;102129;102130 102110 21 LDPHLVLDQLR FVRCIIPNHEKKAGKLDPHLVLDQLRCNGV KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K L D L R C 0 1 0 2 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 1 0 0 11 0 1317.7405 P35579;P35580 P35579 683 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.00011265 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 1 2 1 1.0141 0.92002 16.345 16 Median 1.1236 1.0543 15.735 5 0 Median 0.98679 0.8764 5.2856 5 0 Median 0.75253 0.82352 10.526 2 0 Median 1.1637 1.0184 NaN 1 0 Median 0.86935 0.90149 13.747 2 0 Median 1.0743 0.89416 NaN 1 0 Median 218590000 107310000 111280000 90699000 42777000 47922000 94699000 45679000 49020000 17605000 10310000 7295500 405470 185380 220080 14684000 8122100 6561500 493020 236990 256030 19244 2244;2245 20060 100494;100495;100496;100497;100498;100499;100500;100501;100502;100503;100504;100505;100506;100507;100508;100509;100510 102131;102132;102133;102134;102135;102136;102137;102138;102139;102140;102141;102142;102143;102144;102145;102146;102147;102148 102133 18 LDPHNHVLYSNR GNIDDALQCYSEAIKLDPHNHVLYSNRSAA AIKLDPHNHVLYSNRSAAYAKKGDYQKAYE K L D N R S 0 1 2 1 0 0 0 0 2 0 2 0 0 0 1 1 0 0 1 1 0 0 12 0 1463.727 P31948;F5H783;F5GXD8 P31948 33 44 STIP1 Stress-induced-phosphoprotein 1 yes no 2;3 1.241E-06 115.57 By MS/MS By MS/MS By MS/MS 5 3 2 1.0384 0.94499 10.764 10 Median 1.0383 1.0307 8.1564 5 0 Median 1.0291 0.88735 7.1564 3 0 Median NaN NaN NaN 0 0 Median 1.1607 0.97075 9.8618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143580000 70745000 72832000 38144000 18282000 19862000 99746000 49825000 49921000 0 0 0 5686100 2637200 3048900 0 0 0 0 0 0 19245 2212 20061 100511;100512;100513;100514;100515;100516;100517;100518;100519;100520 102149;102150;102151;102152;102153;102154;102155;102156;102157;102158;102159;102160 102155 12 LDPIQPSDVLSLLDNR LQNHTEGSRPPACPRLDPIQPSDVLSLLDN DPIQPSDVLSLLDNRGSHYVAIVFESNSSY R L D N R G 0 1 1 3 0 1 0 0 0 1 4 0 0 0 2 2 0 0 0 1 0 0 16 0 1793.9523 Q6ZRP7 Q6ZRP7 191 206 QSOX2 Sulfhydryl oxidase 2 yes yes 2 2.8373E-07 96.745 By MS/MS By MS/MS 2 1 0.83505 0.72573 9.1788 3 Plateau 0.73668 0.7198 12.964 2 0 Median 0.83755 0.72573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6242000 3388700 2853400 2307800 1270000 1037800 3934200 2118700 1815600 0 0 0 0 0 0 0 0 0 0 0 0 19246 3198 20062 100521;100522;100523 102161;102162;102163 102163 3 LDPLEQAK LKTMMSVSRNELLQKLDPLEQAKVDLVSAY RNELLQKLDPLEQAKVDLVSAYTLNSMFWV K L D A K V 1 0 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 0 912.49165 J3KPZ4;Q13901 J3KPZ4 86 93 C1D Nuclear nucleic acid-binding protein C1D yes no 2 0.011633 56.547 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.92493 0.8213 83.977 4 Median 1.1448 1.0785 NaN 1 0 Median 0.18946 0.17104 NaN 1 0 Median 0.84971 0.82179 NaN 1 0 Median 1.0068 0.82081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7697100 4207000 3490000 879910 389660 490250 750970 639430 111540 5020300 2562300 2457900 1045900 615600 430320 0 0 0 0 0 0 19247 1314 20063 100524;100525;100526;100527 102164;102165;102166 102164 3 LDPNKYPVPENWLHK DLIQKHKSIEEIVRRLDPNKYPVPENWLHK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE R L D H K E 0 0 2 1 0 0 1 0 1 0 2 2 0 0 3 0 0 1 1 1 0 0 15 1 1848.9523 P39748;I3L3E9 P39748 263 277 FEN1 Flap endonuclease 1 yes no 3;4 0.00016508 48.823 By MS/MS By MS/MS By matching 3 1 1 0.63221 0.62617 6.9067 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59839 0.62617 9.3073 3 0 Median 0.63221 0.60049 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73227 0.63553 NaN 1 0 Median 51949000 32866000 19083000 0 0 0 0 0 0 38551000 24534000 14017000 12824000 8027400 4797100 0 0 0 573860 305210 268650 19248 2283 20064 100528;100529;100530;100531;100532 102167;102168;102169;102170;102171;102172;102173 102169 7 LDPQGEYEEHLGILGPVIR KKVVFRKYLDSTFTKLDPQGEYEEHLGILG GEYEEHLGILGPVIRAEVDDVIQVRFKNLA K L D I R A 0 1 0 1 0 1 3 3 1 2 3 0 0 0 2 0 0 0 1 1 0 0 19 0 2134.1059 CON__Q28107 CON__Q28107 1618 1636 yes yes 3 0.0065723 33.308 By MS/MS 1 0.028084 0.027112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.028084 0.027112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1708100 1661800 46314 0 0 0 0 0 0 1708100 1661800 46314 0 0 0 0 0 0 0 0 0 + 19249 772 20065 100533 102174 102174 1 LDPSIFESLQK VIIGLKTAKGTKQLKLDPSIFESLQKERVE KQLKLDPSIFESLQKERVEAGDVIYIEANS K L D Q K E 0 0 0 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1275.6711 Q9Y265;E7ETR0 Q9Y265 172 182 RUVBL1 RuvB-like 1 yes no 2 0.00021904 74.165 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 1 2 3 1.0686 0.96052 17.472 10 Median 1.0457 0.98579 11.125 3 0 Median 1.1839 1.0161 13.781 2 0 Median 0.90348 0.86492 NaN 1 0 Median 0.97915 0.86526 21.347 2 0 Median 1.1615 1.1484 28.939 2 1 Median NaN NaN NaN 0 0 Median 139300000 67680000 71622000 36858000 18099000 18759000 49779000 22649000 27129000 39644000 20635000 19009000 987480 463760 523720 12035000 5833100 6201700 0 0 0 19250 4375 20066 100534;100535;100536;100537;100538;100539;100540;100541;100542;100543;100544 102175;102176;102177;102178;102179;102180;102181;102182;102183 102178 9 LDPTGTFEK VIQPGPIKTKGAFSRLDPTGTFEKEMIGRI KGAFSRLDPTGTFEKEMIGRIPCGRLGTVE R L D E K E 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 0 2 0 0 0 0 0 9 0 1006.4971 Q16698 Q16698 252 260 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes yes 2 0.015576 52.482 By MS/MS By MS/MS 1 1 0.98428 0.87847 31.949 2 Median 0.73803 0.70083 NaN 1 0 Median 1.3127 1.1011 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10565000 4896900 5667900 5562000 2855100 2706900 5002800 2041800 2961000 0 0 0 0 0 0 0 0 0 0 0 0 19251 2994 20067 100545;100546 102184;102185 102184 2 LDPYVQR ALIAEGIALVWESYKLDPYVQRLAETVFNF ALVWESYKLDPYVQRLAETVFNFQEKVDDL K L D Q R L 0 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 889.46577 Q14204 Q14204 829 835 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0092177 92.692 By MS/MS 1 0.95701 0.77538 NaN 1 Median NaN NaN NaN 0 0 Median 0.95701 0.77538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11277000 5983400 5293500 0 0 0 11277000 5983400 5293500 0 0 0 0 0 0 0 0 0 0 0 0 19252 2865 20068 100547 102186 102186 1 LDQDLNEVK DTEANKEKNLEQYNKLDQDLNEVKARVEEL LEQYNKLDQDLNEVKARVEELDRKYYEVKN K L D V K A 0 0 1 2 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1072.5401 Q9UQE7 Q9UQE7 437 445 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0045326 76.221 By MS/MS 2 0.93936 0.80044 6.4256 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93936 0.80044 6.4256 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4692300 2252500 2439800 0 0 0 0 0 0 0 0 0 4692300 2252500 2439800 0 0 0 0 0 0 19253 4362 20069 100548;100549 102187;102188 102188 2 LDQELDFILSQQK SLHREVEKVKLDQKRLDQELDFILSQQKEL KRLDQELDFILSQQKELEDLLSPLEELVKE R L D Q K E 0 0 0 2 0 3 1 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 13 0 1575.8144 P37198;M0QXN5 P37198 389 401 NUP62 Nuclear pore glycoprotein p62 yes no 2 0.00084039 77.64 By MS/MS 1 1.2006 1.2019 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2006 1.2019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5378900 2217800 3161100 0 0 0 0 0 0 5378900 2217800 3161100 0 0 0 0 0 0 0 0 0 19254 2267 20070 100550 102189 102189 1 LDQETAQWLR ______________________________ GEDARLDQETAQWLRWDKNSLTLEAVKRLI R L D L R W 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 10 0 1258.6306 Q96G03;E7ENQ8;E9PD70 Q96G03 15 24 PGM2 Phosphoglucomutase-2 yes no 2 0.0066695 48.794 By MS/MS 1 1.0644 0.92339 NaN 1 Median NaN NaN NaN 0 0 Median 1.0644 0.92339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3744000 1517100 2226900 0 0 0 3744000 1517100 2226900 0 0 0 0 0 0 0 0 0 0 0 0 19255 3652 20071 100551 102190;102191 102191 2 LDQIYLVNER GGPTQEEKTRLLKERLDQIYLVNERRCSQA LLKERLDQIYLVNERRCSQAPVYGRDLLRI R L D E R R 0 1 1 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 10 0 1261.6667 Q96L91 Q96L91 1750 1759 EP400 E1A-binding protein p400 yes yes 2 0.00057276 112.75 By MS/MS 1 0.49978 0.52537 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49978 0.52537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17866000 11470000 6395400 0 0 0 0 0 0 17866000 11470000 6395400 0 0 0 0 0 0 0 0 0 19256 3700 20072 100552 102192;102193 102193 2 LDQLIYIPLPDEK NRPDIIDPAILRPGRLDQLIYIPLPDEKSR GRLDQLIYIPLPDEKSRVAILKANLRKSPV R L D E K S 0 0 0 2 0 1 1 0 0 2 3 1 0 0 2 0 0 0 1 0 0 0 13 0 1555.8498 P55072 P55072 639 651 VCP Transitional endoplasmic reticulum ATPase yes yes 2 3.4943E-07 110.08 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 8 1 1 1 1 0.8485 0.79271 16.422 13 Median 0.81488 0.75647 3.8636 2 0 Median 0.87573 0.77377 17.733 8 3 Median 0.88509 0.97312 NaN 1 0 Median 1.0786 0.94934 NaN 1 0 Median 0.82266 0.84648 NaN 1 0 Median NaN NaN NaN 0 0 Median 175350000 90725000 84622000 47834000 25608000 22225000 119020000 60867000 58150000 6271500 3166500 3105000 356130 183330 172800 1685400 814210 871160 183310 85776 97538 19257 2494 20073 100553;100554;100555;100556;100557;100558;100559;100560;100561;100562;100563;100564;100565;100566 102194;102195;102196;102197;102198;102199;102200;102201;102202;102203;102204;102205;102206;102207;102208;102209;102210;102211;102212 102195 19 LDQLSEIIER YTEAAHRAVLFPQQRLDQLSEIIERFIFVM FPQQRLDQLSEIIERFIFVMPPVEAPPPSL R L D E R F 0 1 0 1 0 1 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1214.6507 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 1966 1975 SRCAP Helicase SRCAP yes no 2 0.00036109 103.7 By MS/MS By MS/MS By matching 2 1 1 1.0119 0.96094 12.058 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89069 0.96308 18.495 2 1 Median NaN NaN NaN 0 0 Median 0.9827 1.0292 NaN 1 0 Median 1.0939 0.89724 NaN 1 0 Median 20376000 10905000 9470300 0 0 0 0 0 0 15661000 8619900 7040800 0 0 0 4503400 2196600 2306800 211650 88898 122750 19258 3199 20074 100567;100568;100569;100570 102213;102214;102215 102215 3 LDQPGNLPGSNR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ VQKLDQPGNLPGSNRRLQTRKEKAQALEEL K L D N R R 0 1 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 12 0 1266.6317 P46013 P46013 1806 1817 MKI67 Antigen KI-67 yes yes 2 0.0046806 63.283 By MS/MS 2 0.56999 0.61408 3.8501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56999 0.61408 3.8501 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9585500 6395500 3190000 0 0 0 0 0 0 9585500 6395500 3190000 0 0 0 0 0 0 0 0 0 19259 2335 20075 100571;100572 102216;102217 102216 2 LDQPGNLPGSNRR EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ QKLDQPGNLPGSNRRLQTRKEKAQALEELT K L D R R L 0 2 2 1 0 1 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 13 1 1422.7328 P46013 P46013 1806 1818 MKI67 Antigen KI-67 yes yes 3 0.00069954 46.069 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.80334 0.78007 15.474 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83236 0.98074 7.9239 2 0 Median 0.77433 0.71133 0.080015 2 0 Median 0.75435 0.81604 NaN 1 0 Median 0.84959 0.74568 NaN 1 0 Median 18739000 9725800 9013000 0 0 0 0 0 0 10452000 5719900 4731700 1736800 1056900 679900 4648100 1872800 2775300 1902200 1076100 826060 19260 2335 20076 100573;100574;100575;100576;100577;100578 102218;102219;102220;102221;102222;102223;102224;102225;102226;102227 102227 10 LDQPMTEIVSR MLYSFFMPAAKLKERLDQPMTEIVSRVSKR LKERLDQPMTEIVSRVSKRKLGRHVRALVL R L D S R V 0 1 0 1 0 1 1 0 0 1 1 0 1 0 1 1 1 0 0 1 0 0 11 0 1287.6493 P22314;Q5JRR6 P22314 1011 1021 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 5.6726E-05 152.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 3 1 1 0.95547 0.9064 15.184 12 Median 0.78021 0.74792 15.257 4 0 Median 1.1502 0.99089 3.8503 4 0 Median 0.90278 0.97524 10.235 2 2 Median 1.0187 0.8671 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0982 0.90565 NaN 1 0 Median 309880000 153360000 156520000 200870000 100540000 100330000 84032000 39517000 44516000 22102000 11811000 10291000 2457100 1301700 1155400 0 0 0 416000 190870 225130 19261 2100 20077;20078 100579;100580;100581;100582;100583;100584;100585;100586;100587;100588;100589;100590;100591;100592 102228;102229;102230;102231;102232;102233;102234;102235;102236;102237;102238;102239;102240;102241;102242;102243;102244;102245 102232 861 18 LDQQTLPLGGR VPKSEAEQKLPLGTRLDQQTLPLGGRELSQ LGTRLDQQTLPLGGRELSQGLLPLPQPYQA R L D G R E 0 1 0 1 0 2 0 2 0 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1196.6513 P98175 P98175 253 263 RBM10 RNA-binding protein 10 yes yes 2 0.00016463 113.62 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 3 2 1.2096 1.1148 15.999 11 Median NaN NaN NaN 0 0 Median 1.2789 1.122 34.541 2 0 Median 1.0063 1.0869 28.507 2 0 Median 1.3431 1.1451 3.7948 2 0 Median 0.94003 0.97665 13.576 3 0 Median 1.3232 1.1051 3.4014 2 0 Median 76616000 37670000 38946000 0 0 0 5140700 2359400 2781300 35791000 17726000 18065000 6213600 2871200 3342300 25327000 12790000 12536000 4143500 1922600 2220900 19262 2671 20079 100593;100594;100595;100596;100597;100598;100599;100600;100601;100602;100603 102246;102247;102248;102249;102250;102251;102252 102246 7 LDQTHLETVIPAPGKR YTAVVKMIDSGDKLKLDQTHLETVIPAPGK DQTHLETVIPAPGKRILVLNGGYRGNEGTL K L D K R I 1 1 0 1 0 1 1 1 1 1 2 1 0 0 2 0 2 0 0 1 0 0 16 1 1773.9737 O60870;S4R357 O60870 327 342 KIN DNA/RNA-binding protein KIN17 yes no 4 4.0666E-05 50.305 By MS/MS 1 0.81034 0.7767 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81034 0.7767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5459700 2934200 2525500 0 0 0 0 0 0 0 0 0 5459700 2934200 2525500 0 0 0 0 0 0 19263 1636 20080 100604 102253 102253 1 LDQVEQELNELR ITRVETYLNENLRKRLDQVEQELNELRETE RKRLDQVEQELNELRETEGGTVLTATTSEL R L D L R E 0 1 1 1 0 2 3 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 12 0 1484.7471 Q9UQE7 Q9UQE7 840 851 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.017632 33.866 By MS/MS By matching 1 1 0.78579 0.768 13.79 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99367 0.84666 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6214 0.69665 NaN 1 0 Median 1622500 854140 768340 0 0 0 0 0 0 0 0 0 1491300 764750 726580 0 0 0 131160 89394 41763 19264 4362 20081 100605;100606 102254;102255 102254 2 LDQWLTTMLLR DSYTESVKEYDSISRLDQWLTTMLLRIKKT SISRLDQWLTTMLLRIKKTIQGDEEDLR__ R L D L R I 0 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 2 1 0 0 0 0 11 0 1388.7486 M0R0Y2;P54920;M0R213 M0R0Y2 233 243 NAPA Alpha-soluble NSF attachment protein no no 2 0.041963 45.997 By MS/MS 1 1.2772 1.262 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2772 1.262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3498700 1316200 2182500 0 0 0 0 0 0 3498700 1316200 2182500 0 0 0 0 0 0 0 0 0 19265 1430 20082 100607 102256 102256 1 LDRETEELHHDR AGQNKQHSITKNTAKLDRETEELHHDRVTL TAKLDRETEELHHDRVTLEVGKVIQQGRQS K L D D R V 0 2 0 2 0 0 3 0 2 0 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1548.7281 O60869 O60869 61 72 EDF1 Endothelial differentiation-related factor 1 yes yes 3 0.0015159 42.789 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0409 1.0637 9.5594 5 Median 1.0453 1.0957 NaN 1 0 Median 1.02 0.93311 NaN 1 0 Median 1.0419 1.1055 5.4523 2 0 Median 1.0409 0.93206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795900 1803200 1992600 163040 74427 88613 542760 294390 248370 1681200 792780 888470 1408800 641630 767190 0 0 0 0 0 0 19266 1635 20083 100608;100609;100610;100611;100612 102257;102258;102259;102260;102261;102262;102263 102263 7 LDRETEELHHDRVTLEVGK AGQNKQHSITKNTAKLDRETEELHHDRVTL TEELHHDRVTLEVGKVIQQGRQSKGLTQKD K L D G K V 0 2 0 2 0 0 4 1 2 0 3 1 0 0 0 0 2 0 0 2 0 0 19 2 2275.1557 O60869 O60869 61 79 EDF1 Endothelial differentiation-related factor 1 yes yes 4 8.2714E-06 49.224 By matching By MS/MS By matching 1 1 1 1.1107 0.97197 28.288 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3517 1.579 NaN 1 0 Median 1.1107 0.96299 NaN 1 0 Median 0.81056 0.97197 NaN 1 0 Median NaN NaN NaN 0 0 Median 9631800 3712800 5919000 0 0 0 0 0 0 3107600 1067700 2039900 5200400 2107100 3093200 1323800 537960 785850 0 0 0 19267 1635 20084 100613;100614;100615 102264 102264 1 LDSELKNMQDMVEDYR NLRRRVDQLKSDQSRLDSELKNMQDMVEDY DSELKNMQDMVEDYRNKYEDEINKRTNAEN R L D Y R N 0 1 1 3 0 1 2 0 0 0 2 1 2 0 0 1 0 0 1 1 0 0 16 1 1984.887 P04264;CON__P04264 P04264 252 267 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 2.3618E-20 133.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 1 6 2 7 0.075187 0.081358 119.28 20 Median 0.028746 0.029419 113.22 8 8 Median 0.034756 0.032228 NaN 1 1 Median 0.09398 0.11264 145.12 5 5 Median NaN NaN NaN 0 0 Median 0.094445 0.10179 43.294 6 6 Median NaN NaN NaN 0 0 Median 232420000 220040000 12388000 96419000 94126000 2293100 9912100 9773500 138660 47394000 42312000 5081100 12225000 12225000 0 66475000 61600000 4874700 0 0 0 + 19268 1848 20085;20086;20087 100616;100617;100618;100619;100620;100621;100622;100623;100624;100625;100626;100627;100628;100629;100630;100631;100632;100633;100634;100635;100636;100637;100638;100639;100640;100641;100642;100643 102265;102266;102267;102268;102269;102270;102271;102272;102273;102274;102275;102276;102277;102278;102279;102280;102281;102282;102283;102284;102285;102286;102287;102288;102289;102290;102291;102292 102280 604;605 28 LDSGKELHINLIPNKQDR ALDKIRYESLTDPSKLDSGKELHINLIPNK GKELHINLIPNKQDRTLTIVDTGIGMTKAD K L D D R T 0 1 2 2 0 1 1 1 1 2 3 2 0 0 1 1 0 0 0 0 0 0 18 2 2089.128 P07900;G3V2J8 P07900 70 87 HSP90AA1 Heat shock protein HSP 90-alpha yes no 3;4;5 8.5115E-07 81.157 By MS/MS 3 0.97557 1.0745 14.128 3 Median 0.97557 1.0745 14.128 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38122000 17853000 20269000 38122000 17853000 20269000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19269 1894 20088 100644;100645;100646 102293;102294;102295;102296 102294 4 LDSIDPALR LDSRGEIVVIGATNRLDSIDPALRRPGRFD IGATNRLDSIDPALRRPGRFDREFLFSLPD R L D L R R 1 1 0 2 0 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 0 998.53966 Q6PL18 Q6PL18 577 585 ATAD2 ATPase family AAA domain-containing protein 2 no no 2 0.0024624 107.66 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19270 3177 20089 100647 102297 102297 1 LDSIVIQQGR TVEERIVERAEMKLRLDSIVIQQGRLVDQN EMKLRLDSIVIQQGRLVDQNLNKIGKDEML R L D G R L 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1127.6299 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 627 636 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 4.221E-05 127.46 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 3 1.3011 1.1256 15.007 9 Median 1.1515 1.1277 24.277 2 0 Median NaN NaN NaN 0 0 Median 1.1699 1.2865 NaN 1 0 Median 1.3253 1.1256 NaN 1 1 Median 0.95078 0.97722 10.397 2 1 Median 1.4576 1.2155 13.659 3 0 Median 45767000 21912000 23856000 5501200 2971200 2530000 0 0 0 9734400 4765100 4969300 4887400 2086600 2800800 18188000 9163100 9024900 7456500 2925800 4530700 19271 1608;643;167 20090 100648;100649;100650;100651;100652;100653;100654;100655;100656 102298;102299;102300;102301;102302;102303 102300 6 LDSLPPVIK HGVRVDGIAWSPETRLDSLPPVIKFCTSAA WSPETRLDSLPPVIKFCTSAADMKIRLFTS R L D I K F 0 0 0 1 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 9 0 980.59063 Q8NFH4;F8VTY2 Q8NFH4 86 94 NUP37 Nucleoporin Nup37 yes no 2 0.0040114 61.999 By matching By MS/MS By matching 1 1 5 0.92611 0.78245 57.966 7 Median NaN NaN NaN 0 0 Median 0.92827 0.81037 NaN 1 0 Median 0.77136 0.74206 NaN 1 0 Median 0.92611 0.78245 68.863 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13372000 7048900 6322900 0 0 0 296280 153510 142770 9390700 5180600 4210100 3684900 1714800 1970000 0 0 0 0 0 0 19272 3436 20091 100657;100658;100659;100660;100661;100662;100663 102304;102305 102304 2 LDSLTTLYLR LRHNKLREIPSVVYRLDSLTTLYLRFNRIT SVVYRLDSLTTLYLRFNRITTVEKDIKNLS R L D L R F 0 1 0 1 0 0 0 0 0 0 4 0 0 0 0 1 2 0 1 0 0 0 10 0 1193.6656 Q9UQ13;X6RI37 Q9UQ13 191 200 SHOC2 Leucine-rich repeat protein SHOC-2 yes no 2 0.0079033 47.198 By MS/MS By matching By matching 1 1 1 1.4648 1.3097 9.0411 3 Median 1.4686 1.4906 NaN 1 0 Median 1.4648 1.3097 NaN 1 0 Median 1.2025 1.2524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5171400 2269500 2901900 1238600 599110 639490 313010 106750 206260 3619800 1563600 2056100 0 0 0 0 0 0 0 0 0 19273 4358 20092 100664;100665;100666 102306 102306 1 LDSPAGTALSPSGHTK VSPAAIKKTILDKVKLDSPAGTALSPSGHT DSPAGTALSPSGHTKLLPRSLAPAGKD___ K L D T K L 2 0 0 1 0 0 0 2 1 0 2 1 0 0 2 3 2 0 0 0 0 0 16 0 1537.7736 P32322;E2QRB3 P32322 292 307 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3 0.00019684 43.05 By MS/MS By MS/MS 1 1 0.86863 0.78572 29.049 2 Median 0.66127 0.63982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.141 0.96488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5371300 3092400 2278900 3595800 2231100 1364600 0 0 0 0 0 0 1775600 861270 914290 0 0 0 0 0 0 19274 2218 20093 100667;100668 102307;102308;102309;102310 102310 4 LDSSAQFGYYFR SAARDLGLDPGKQIKLDSSAQFGYYFRVTC QIKLDSSAQFGYYFRVTCKEEKVLRNNKNF K L D F R V 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 2 0 0 2 0 0 0 12 0 1452.6674 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 513 524 MSH2 DNA mismatch repair protein Msh2 yes no 2 3.3941E-05 156.92 By MS/MS By matching 1 1 1.1372 1.0351 15.46 2 Median 0.96234 0.92791 NaN 1 0 Median 1.3437 1.1547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10763000 5128300 5634200 8953700 4417800 4535900 1808800 710570 1098300 0 0 0 0 0 0 0 0 0 0 0 0 19275 2324 20094 100669;100670 102311;102312 102312 2 LDSSAVLDTGK DKVEDALNLKEEFDRLDSSAVLDTGKYVGL EFDRLDSSAVLDTGKYVGLVRVLAKHGKLQ R L D G K Y 1 0 0 2 0 0 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 11 0 1104.5663 P42704 P42704 740 750 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00020487 101.97 By MS/MS By MS/MS 1 2 1.5152 1.2769 35.556 3 Median 0.73692 0.71547 NaN 1 1 Median 1.5632 1.3208 4.7815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32826000 14328000 18499000 7507200 4515600 2991600 25319000 9811900 15507000 0 0 0 0 0 0 0 0 0 0 0 0 19276 2315 20095 100671;100672;100673 102313;102314 102314 2 LDSSETTMVK VSQGVEDGPDTKRAKLDSSETTMVKKKVVF TKRAKLDSSETTMVKKKVVFCPVKEALEVD K L D V K K 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 2 2 0 0 1 0 0 10 0 1109.5274 Q9UBE0;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65 Q9UBE0 199 208 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed no no 2 0.00070879 107.57 By MS/MS By MS/MS 1 1 1.0055 0.91354 7.0557 2 Median 0.90369 0.86908 NaN 1 0 Median 1.1189 0.96027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5546500 2703800 2842700 1629600 849670 779910 3916900 1854100 2062800 0 0 0 0 0 0 0 0 0 0 0 0 19277 4237 20096 100674;100675 102315;102316;102317 102317 3 LDSSPSVSSTLAAK GLTPANSQASKATPKLDSSPSVSSTLAAKD KLDSSPSVSSTLAAKDDPDGKQEAKPQQAA K L D A K D 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 1 0 0 14 0 1361.7038 E7ETY2;A0A3B3IS06;Q13428 Q13428 1225 1238 TCOF1 Treacle protein no no 2 7.8822E-09 109.24 By matching By matching By MS/MS By MS/MS 1 1 3 4 0.9712 0.88148 22.862 9 Median 1.2308 1.2806 NaN 1 0 Median 0.76933 0.68857 NaN 1 0 Median 0.82968 0.88148 27.187 3 0 Median 1.0392 0.89227 15.415 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57615000 29936000 27679000 4270300 1968600 2301700 551240 276480 274770 39722000 21436000 18286000 13072000 6255700 6815900 0 0 0 0 0 0 19278 2816;891 20097 100676;100677;100678;100679;100680;100681;100682;100683;100684 102318;102319;102320;102321;102322;102323;102324 102319 7 LDSVLLLSSMNLPGGELR TEVQQKRWKVETNSRLDSVLLLSSMNLPGG VLLLSSMNLPGGELRRRSAEDELAMRGFLQ R L D L R R 0 1 1 1 0 0 1 2 0 0 6 0 1 0 1 3 0 0 0 1 0 0 18 0 1913.0292 Q13868;A3KFL5;A3KFL2;A3KFL1 Q13868 104 121 EXOSC2 Exosome complex component RRP4 yes no 2 5.4721E-06 71.241 By MS/MS 1 1.0175 1.0014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2857300 1386300 1471000 0 0 0 0 0 0 2857300 1386300 1471000 0 0 0 0 0 0 0 0 0 19279 2843 20098 100685 102325;102326 102326 2 LDSVNKDLNSQLEYLR EQIDLLQQYRSAVCKLDSVNKDLNSQLEYL DSVNKDLNSQLEYLRTPDMRKKKQELDEHE K L D L R T 0 1 2 2 0 1 1 0 0 0 4 1 0 0 0 2 0 0 1 1 0 0 16 1 1905.9796 A6NHR9;A0A2R8YCU7 A6NHR9 1919 1934 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2;3 4.2724E-05 64.136 By MS/MS 3 0.91636 1.0983 31.255 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91636 1.0983 31.255 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28056000 14940000 13117000 0 0 0 0 0 0 28056000 14940000 13117000 0 0 0 0 0 0 0 0 0 19280 518 20099 100686;100687;100688 102327;102328;102329 102327 3 LDSVPVEEQEEFK QLNAAHQEALMKLERLDSVPVEEQEEFKQL ERLDSVPVEEQEEFKQLSDGIQELQQSLNQ R L D F K Q 0 0 0 1 0 1 4 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 0 1547.7355 B1AQT4;E9PP32;E9PQC4;Q9BZD4 B1AQT4 169 181 NUF2 Kinetochore protein Nuf2 yes no 2 0.012844 34.721 By MS/MS 1 0.82607 0.81555 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82607 0.81555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4324400 2310300 2014000 0 0 0 0 0 0 4324400 2310300 2014000 0 0 0 0 0 0 0 0 0 19281 579 20100 100689 102330;102331 102331 2 LDTAMWLSR GPQGAGAVQFMMTNKLDTAMWLSRLFTVYC FMMTNKLDTAMWLSRLFTVYCSALFVLPLL K L D S R L 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 1 0 0 0 0 9 0 1091.5434 P57088;D6RAA6;J3KN43;D6RBY2 P57088 23 31 TMEM33 Transmembrane protein 33 yes no 2 0.00047525 122.52 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.4886 1.2902 33.469 9 Median 1.5595 1.5671 12.396 3 1 Median 1.4886 1.2725 46.915 3 0 Median 1.403 1.3282 NaN 1 1 Median 0.9639 0.78604 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5485 1.2902 NaN 1 0 Median 26698000 11433000 15265000 16253000 6706900 9546100 7601400 3545600 4055800 2515600 1026100 1489500 246320 118890 127440 0 0 0 81602 35633 45970 19282 2516 20101 100690;100691;100692;100693;100694;100695;100696;100697;100698 102332;102333;102334;102335;102336;102337 102333 6 LDTDDLDEIEK ILNRIQEHFNKKIERLDTDDLDEIEKIAN_ KIERLDTDDLDEIEKIAN____________ R L D E K I 0 0 0 4 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1304.5984 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 465 475 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 0.0025641 52.79 By matching By matching By matching By MS/MS 2 2 1 1 1.008 0.91236 11.564 6 Median 1.0247 0.9839 22.89 2 0 Median 1.008 0.88965 4.2921 2 0 Median 0.93495 0.90768 NaN 1 0 Median 1.1309 0.97358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24314000 11714000 12601000 7758200 3349900 4408300 1434000 666670 767290 13716000 7016700 6699200 1406400 680630 725740 0 0 0 0 0 0 19283 4121;1225 20102 100699;100700;100701;100702;100703;100704 102338;102339 102339 2 LDTDISLIR YVLPVVSYIRKCLEKLDTDISLIRYFVTEV RKCLEKLDTDISLIRYFVTEVLDVIAPPYT K L D I R Y 0 1 0 2 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1044.5815 H0UI80;X6RLT1;Q8IXH7 H0UI80 532 540 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.00088636 92.439 By matching By matching By MS/MS By matching By matching By matching 1 2 1 2 2 1 0.97473 0.87579 15.007 9 Median 0.72965 0.73869 NaN 1 0 Median 0.99216 0.87049 4.8117 2 0 Median 0.85104 0.87579 NaN 1 0 Median 1.2639 1.0861 13.987 2 0 Median 0.81262 0.85724 0.98371 2 0 Median 1.3023 1.1134 NaN 1 0 Median 18183000 10067000 8116100 1809800 1138600 671230 1729800 853680 876120 5238000 2862600 2375400 811100 369430 441680 8242900 4709400 3533600 351130 133020 218120 19284 1138 20103 100705;100706;100707;100708;100709;100710;100711;100712;100713 102340;102341 102340 2 LDTEQLAQR SALPTLMSVMLAKPRLDTEQLAQRGAGLCF MLAKPRLDTEQLAQRGAGLCFTFVSAQQNS R L D Q R G 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1072.5513 Q86UE8;J3KRK0;J3QLK5;J3QS44;J3QQN4 Q86UE8 159 167 TLK2 Serine/threonine-protein kinase tousled-like 2 yes no 2 0.0054443 71.501 By MS/MS 1 0.63531 0.67998 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63531 0.67998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1761800 1084000 677800 0 0 0 0 0 0 1761800 1084000 677800 0 0 0 0 0 0 0 0 0 19285 3277 20104 100714 102342 102342 1 LDTETEGVPSTAIR RNKLTGEVVALKKIRLDTETEGVPSTAIRE RLDTETEGVPSTAIREISLLKELNHPNIVK R L D I R E 1 1 0 1 0 0 2 1 0 1 1 0 0 0 1 1 3 0 0 1 0 0 14 0 1487.7468 G3V5T9;P24941 G3V5T9 37 50 CDK2 Cyclin-dependent kinase 2 yes no 2 9.7392E-06 90.685 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.149 1.0669 12.138 5 Median 1.149 1.0879 NaN 1 1 Median 1.2812 1.0669 NaN 1 0 Median 1.2086 1.1767 NaN 1 0 Median 1.0306 0.85978 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1457 0.96352 NaN 1 0 Median 33872000 14775000 19097000 4935000 2331400 2603600 5721100 3194900 2526200 14140000 5415800 8723800 7963800 3182900 4780900 0 0 0 1112900 650420 462450 19286 1120 20105 100715;100716;100717;100718;100719 102343;102344;102345;102346;102347;102348 102345 6 LDTHPAMVTVLEMGAAR NVLGSRVTNVKVTLRLDTHPAMVTVLEMGA THPAMVTVLEMGAARHFLRMQQLAKTQEER R L D A R H 3 1 0 1 0 0 1 1 1 0 2 0 2 0 1 0 2 0 0 2 0 0 17 0 1810.907 I3L0K7;Q12931 Q12931 603 619 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 2.5941E-05 57.802 By MS/MS By matching 3 1 1.1459 1.1407 67.07 4 Median 1.0376 0.98164 81.723 3 0 Median NaN NaN NaN 0 0 Median 1.2656 1.3255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27041000 12595000 14445000 21846000 10239000 11607000 0 0 0 5194400 2356400 2838000 0 0 0 0 0 0 0 0 0 19287 2771;1269 20106 100720;100721;100722;100723 102349;102350;102351;102352 102352 4 LDTIFFAK QPGEEPAGSVVQDSRLDTIFFAKQVINNAC SVVQDSRLDTIFFAKQVINNACATQAIVSV R L D A K Q 1 0 0 1 0 0 0 0 0 1 1 1 0 2 0 0 1 0 0 0 0 0 8 0 953.52222 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0 Q5LJA5 74 81 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.010382 58.981 By MS/MS By matching By matching By matching 2 2 1 1 1.2594 1.13 10.672 6 Median 1.1028 1.0547 6.7551 2 0 Median 1.5033 1.3008 7.1725 2 0 Median 1.1442 1.099 NaN 1 0 Median 1.3395 1.1542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10731000 4914500 5816500 7798800 3737000 4061800 657080 251670 405400 2138500 868580 1270000 136670 57334 79335 0 0 0 0 0 0 19288 3064 20107 100724;100725;100726;100727;100728;100729 102353;102354 102354 2 LDTMNTTCVDR LPQVLAQATEMLYMRLDTMNTTCVDRFINW LYMRLDTMNTTCVDRFINWFSHHLSNFQFR R L D D R F 0 1 1 2 1 0 0 0 0 0 1 0 1 0 0 0 3 0 0 1 0 0 11 0 1324.5751 Q09161 Q09161 402 412 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.0018837 56.563 By MS/MS By matching By matching 1 2 1 1.0001 0.98256 21.554 4 Median NaN NaN NaN 0 0 Median 1.0488 0.95088 NaN 1 0 Median 0.79978 0.82044 30.137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3168 1.0664 NaN 1 0 Median 8414800 3335800 5079000 0 0 0 877010 355760 521250 5021300 2034500 2986700 0 0 0 0 0 0 2516500 945480 1571100 19289 2747 20108 100730;100731;100732;100733 102355 102355 1 LDTSQWPLLLK HAEEFLIKPESKVAKLDTSQWPLLLKNFDK KVAKLDTSQWPLLLKNFDKLNVRTTHYTPL K L D L K N 0 0 0 1 0 1 0 0 0 0 4 1 0 0 1 1 1 1 0 0 0 0 11 0 1312.7391 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 47 57 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.00080475 62.546 By MS/MS By matching By matching 3 1 1 0.76157 0.76821 17.651 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71591 0.75617 5.3877 3 0 Median NaN NaN NaN 0 0 Median 0.93646 0.96202 NaN 1 0 Median 1.2321 1.0537 NaN 1 0 Median 16664000 10276000 6388400 0 0 0 0 0 0 15616000 9768400 5847200 0 0 0 783240 391020 392220 265270 116260 149010 19290 1634 20109 100734;100735;100736;100737;100738 102356;102357;102358;102359;102360;102361 102359 6 LDVATDNFFQNPELYIR SEKTAVSCLSQNDWKLDVATDNFFQNPELY VATDNFFQNPELYIRESVKGSLDRKKLEQL K L D I R E 1 1 2 2 0 1 1 0 0 1 2 0 0 2 1 0 1 0 1 1 0 0 17 0 2054.0109 Q96GG9;C9JVE2;C9JRU6;C9J0B2;C9J8R4 Q96GG9 37 53 DCUN1D1 DCN1-like protein 1;DCN1-like protein yes no 2 0.044959 21.873 By MS/MS By matching By matching By matching 1 1 1 1 0.94104 0.82414 1.9535 4 Median 0.86586 0.81409 NaN 1 0 Median 0.97534 0.83398 NaN 1 0 Median 0.90794 0.84738 NaN 1 0 Median 1.0065 0.81443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1875100 1003900 871230 1148800 661720 487090 406580 203280 203300 262190 114960 147230 57559 23957 33602 0 0 0 0 0 0 19291 3657 20110 100739;100740;100741;100742 102362 102362 1 LDVEEPDSANSSFYSTR RRRTTQIINITMTKKLDVEEPDSANSSFYS VEEPDSANSSFYSTRSAPASQASLRATSST K L D T R S 1 1 1 2 0 0 2 0 0 0 1 0 0 1 1 4 1 0 1 1 0 0 17 0 1915.8436 A0A087WY61;Q14980 Q14980 1823 1839 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.0114E-15 118.37 By MS/MS By matching By MS/MS 1 1 1 0.73064 0.63925 15.176 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52285 0.56987 NaN 1 1 Median 0.73064 0.63925 NaN 1 0 Median 0.73683 0.76982 NaN 1 0 Median NaN NaN NaN 0 0 Median 22969000 15013000 7955600 0 0 0 0 0 0 17332000 11959000 5372700 465400 297160 168230 5171700 2757100 2414600 0 0 0 19292 2905;77 20111 100743;100744;100745 102363;102364;102365 102363 3 LDVGNAEVKLEEENR ENDQLKKGAAVDGGKLDVGNAEVKLEEENR LDVGNAEVKLEEENRSLKADLQKLKDELAS K L D N R S 1 1 2 1 0 0 4 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 15 1 1713.8533 P51572;C9JSP1;C9JQ75;C9J0M4 P51572 168 182 BCAP31 B-cell receptor-associated protein 31 yes no 2;3 8.0019E-11 122.42 By MS/MS By MS/MS 2 5 0.9036 0.88513 45.313 6 Median 0.51569 0.53861 70.27 2 1 Median 1.057 0.97683 21.292 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 142200000 75543000 66655000 70396000 41872000 28524000 71802000 33670000 38131000 0 0 0 0 0 0 0 0 0 0 0 0 19293 2436 20112 100746;100747;100748;100749;100750;100751;100752 102366;102367;102368;102369;102370;102371;102372;102373;102374 102368 9 LDVPQNLMFGK TVNSAYGDTIIIPCRLDVPQNLMFGKWKYE IPCRLDVPQNLMFGKWKYEKPDGSPVFIAF R L D G K W 0 0 1 1 0 1 0 1 0 0 2 1 1 1 1 0 0 0 0 1 0 0 11 0 1260.6536 Q13740 Q13740 45 55 ALCAM CD166 antigen yes yes 2 0.0023517 53.968 By MS/MS By MS/MS 2 1 0.84795 0.77299 20.444 3 Median 0.94602 0.91507 23.862 2 0 Median 0.84795 0.74924 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12147000 6630300 5516900 9923300 5334800 4588400 2224000 1295500 928490 0 0 0 0 0 0 0 0 0 0 0 0 19294 2836 20113 100753;100754;100755 102375;102376;102377;102378 102377 4 LDVQFAGTAK PTHFTVLTKGAGKAKLDVQFAGTAKGEVVR AGKAKLDVQFAGTAKGEVVRDFEIIDNHDY K L D A K G 2 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1048.5553 Q14315 Q14315 902 911 FLNC Filamin-C yes yes 2 0.0012456 105.52 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 2 1.2147 1.1452 14.154 8 Median 1.213 1.2137 NaN 1 1 Median 1.2164 1.0805 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1742 1.0591 21.146 2 1 Median 1.2787 1.3224 10.191 2 0 Median 1.2166 1.0242 2.9301 2 0 Median 40756000 17669000 23087000 8828700 4225500 4603100 3080200 1328100 1752100 0 0 0 3776900 1824800 1952100 20017000 8008600 12008000 5053700 2282100 2771500 19295 2871 20114 100756;100757;100758;100759;100760;100761;100762;100763 102379;102380;102381 102379 3 LDVQFSGLTK PTHFTVNAKAAGKGKLDVQFSGLTKGDAVR AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K L D T K G 0 0 0 1 0 1 0 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1106.5972 P21333;Q60FE5;A0A087WWY3 P21333 907 916 FLNA Filamin-A no no 2 0.00033938 113.62 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.0409 1.0047 9.8702 7 Median 1.1004 1.083 10.603 2 0 Median 1.0167 0.90517 10.584 2 0 Median 0.92732 1.0313 NaN 1 0 Median 1.0538 0.98114 4.5768 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101090000 48831000 52256000 37853000 17468000 20384000 54561000 26891000 27670000 6516300 3465800 3050500 2157300 1006800 1150500 0 0 0 0 0 0 19296 2088;3120 20115 100764;100765;100766;100767;100768;100769;100770 102382;102383;102384;102385;102386 102383 5 LDVRDTAYPETNDAIPMISK KMNLPGEVTFLPLNKLDVRDTAYPETNDAI TAYPETNDAIPMISKLRYNPRFDKAFKHVF K L D S K L 2 1 1 3 0 0 1 0 0 2 1 1 1 0 2 1 2 0 1 1 0 0 20 1 2248.1045 Q9UQE7 Q9UQE7 593 612 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.00057539 28.891 By matching By MS/MS 1 1 0.57574 0.65225 23.947 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48516 0.55065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68323 0.7726 NaN 1 0 Median NaN NaN NaN 0 0 Median 6828600 3721400 3107100 0 0 0 0 0 0 3259500 1962600 1296900 0 0 0 3569100 1758900 1810200 0 0 0 19297 4362 20116 100771;100772 102387 102387 1 LDVSLPFVSR QELILFADLLCQYHRLDVSLPFVSRGPLTV CQYHRLDVSLPFVSRGPLTVEETPRVQGET R L D S R G 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 0 0 0 2 0 0 10 0 1131.6288 Q14676;A2AB05 Q14676 133 142 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.00033784 85.731 By matching By MS/MS By matching By matching By matching 2 6 3 2 1 1.012 0.9559 16.913 14 Median NaN NaN NaN 0 0 Median 0.9718 0.90795 11.997 2 0 Median 1.032 1.0999 16.533 6 0 Median 1.2595 1.1158 16.975 3 0 Plateau 0.96569 1.0256 14.67 2 0 Median 0.79867 0.70407 NaN 1 0 Median 20385000 9750500 10634000 0 0 0 1024900 451530 573400 14693000 7079800 7613400 1078900 516710 562150 3368100 1558800 1809200 219540 143570 75976 19298 2887 20117 100773;100774;100775;100776;100777;100778;100779;100780;100781;100782;100783;100784;100785;100786 102388;102389;102390;102391 102391 4 LDVSNVATDTER HGSVSEASSEQKIAKLDVSNVATDTERLEL IAKLDVSNVATDTERLELKASPNVEAPQPH K L D E R L 1 1 1 2 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1318.6365 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;A0A494C0R9 E9PEM5 1244 1255 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 5.4995E-05 94.767 By MS/MS 1 1.5017 1.2623 NaN 1 Median NaN NaN NaN 0 0 Median 1.5017 1.2623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5305800 2121700 3184100 0 0 0 5305800 2121700 3184100 0 0 0 0 0 0 0 0 0 0 0 0 19299 470 20118 100787 102392;102393 102393 2 LDVSNVATDTERLELK HGSVSEASSEQKIAKLDVSNVATDTERLEL DVSNVATDTERLELKASPNVEAPQPHRHVL K L D L K A 1 1 1 2 0 0 2 0 0 0 3 1 0 0 0 1 2 0 0 2 0 0 16 1 1801.9422 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;A0A494C0R9 E9PEM5 1244 1259 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 0.00011942 47.639 By MS/MS 2 1.2592 1.3003 33.608 2 Median 1.2592 1.3003 33.608 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16628000 8158300 8469600 16628000 8158300 8469600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19300 470 20119 100788;100789 102394;102395 102395 2 LDVTILSPSR QEFTVDTRGAGGQGKLDVTILSPSRKVVPC GGQGKLDVTILSPSRKVVPCLVTPVTGREN K L D S R K 0 1 0 1 0 0 0 0 0 1 2 0 0 0 1 2 1 0 0 1 0 0 10 0 1099.6237 O75369;E7EN95 O75369 977 986 FLNB Filamin-B yes no 2 0.00035174 107.15 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1.1088 0.95015 30.685 8 Median 0.92386 0.86834 NaN 1 0 Median 1.1088 0.91864 17.502 2 0 Median 0.89833 0.93178 39.54 2 0 Median 1.0639 0.91122 38.247 2 0 Median 1.6851 1.6751 NaN 1 0 Median NaN NaN NaN 0 0 Median 47884000 23069000 24815000 9439900 3980600 5459200 26888000 12871000 14017000 6511500 4192600 2318900 929980 395790 534190 4114400 1629100 2485300 0 0 0 19301 1664 20120 100790;100791;100792;100793;100794;100795;100796;100797 102396;102397;102398 102397 3 LDVTLGPVPEIGGSEAPAPQNK QCLAEFKRDLEWVERLDVTLGPVPEIGGSE VPEIGGSEAPAPQNKDQKAVDPEDDFQREM R L D N K D 2 0 1 1 0 1 2 3 0 1 2 1 0 0 4 1 1 0 0 2 0 0 22 0 2188.1376 H7C2Q8;Q99848 H7C2Q8 125 146 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 7.2954E-05 37.954 By matching By MS/MS By MS/MS 1 2 2 0.52355 0.51995 12.202 5 Median NaN NaN NaN 0 0 Median 0.68514 0.58847 NaN 1 0 Median 0.46789 0.50526 1.1516 2 1 Median NaN NaN NaN 0 0 Median 0.59311 0.58917 17.675 2 0 Median NaN NaN NaN 0 0 Median 15374000 9748800 5625200 0 0 0 902620 538810 363810 6748200 4542900 2205200 0 0 0 7723200 4667100 3056100 0 0 0 19302 1262 20121 100798;100799;100800;100801;100802 102399;102400;102401;102402;102403;102404;102405 102400 7 LDVTSVEDYK LTCPFEPPKPKTKHKLDVTSVEDYKALQKY KTKHKLDVTSVEDYKALQKYEKEKFEEMIQ K L D Y K A 0 0 0 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 2 0 0 10 0 1167.5659 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 266 275 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.00036109 82.749 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.1779 1.024 32.368 6 Median 1.1481 1.0682 NaN 1 0 Median 1.2102 1.024 2.0038 2 0 Median 0.80134 0.7781 NaN 1 1 Median 0.55172 0.46984 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2404 1.0522 NaN 1 0 Median 71297000 34439000 36858000 32786000 15052000 17734000 21173000 9545200 11627000 13274000 7111500 6162900 3131500 2184200 947300 0 0 0 932260 546330 385930 19303 2364 20122 100803;100804;100805;100806;100807;100808 102406;102407;102408;102409;102410;102411 102407 6 LDVTTQTPLTPEQLR GTEQQGSHLNPEQLRLDVTTQTPLTPEQLR LDVTTQTPLTPEQLRAVENTVQEAVGQDEA R L D L R A 0 1 0 1 0 2 1 0 0 0 3 0 0 0 2 0 4 0 0 1 0 0 15 0 1710.9152 Q5JTZ9 Q5JTZ9 664 678 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 1.6761E-09 114.83 By MS/MS By matching 1 1 0.87366 0.81972 23.597 2 Median 0.71798 0.69375 NaN 1 0 Median 1.0631 0.96858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7131900 4100500 3031500 6411400 3779300 2632100 720530 321180 399350 0 0 0 0 0 0 0 0 0 0 0 0 19304 3054 20123 100809;100810 102412;102413 102412 2 LDWELEQR AEVTMGDPHQQTLARLDWELEQRKRLAEKY HQQTLARLDWELEQRKRLAEKYRECLSNKE R L D Q R K 0 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1087.5298 Q13769;F8WCP5;C9JXG5;H7C072 Q13769 191 198 THOC5 THO complex subunit 5 homolog yes no 2 0.0034335 96.492 By MS/MS By MS/MS By matching 1 2 1 1.2762 1.1917 36.143 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0351 1.0639 NaN 1 0 Median 1.2762 1.0955 27.929 2 0 Median NaN NaN NaN 0 0 Median 2.5057 2.0706 NaN 1 0 Median 10713000 4687700 6025000 0 0 0 0 0 0 6942300 3141300 3801000 3383500 1434100 1949400 0 0 0 386940 112350 274590 19305 2837 20124 100811;100812;100813;100814 102414;102415;102416 102415 3 LDYCMVSDLR L D L R 0 1 0 2 1 0 0 0 0 0 2 0 1 0 0 1 0 0 1 1 0 0 10 0 1270.5686 REV__Q2TBA0 yes yes 2 0.019557 42.109 By MS/MS By matching 2 1 0.8448 0.83725 5.0562 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8448 0.83725 0 2 0 Median 1.0661 0.91388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58489000 30643000 27846000 0 0 0 0 0 0 54061000 28716000 25345000 4428400 1927800 2500600 0 0 0 0 0 0 + 19306 4542 20125 100815;100816;100817 102417 102417 2008 1 LDYDEDASAMLK GHWEEAAHDLALACKLDYDEDASAMLKEVQ ACKLDYDEDASAMLKEVQPRAQKIAEHRRK K L D L K E 2 0 0 3 0 0 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 12 0 1369.6071 P50502;Q8NFI4;H7C3I1 P50502 211 222 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 2 5.6046E-05 94.692 By matching By MS/MS By MS/MS 1 1 1 1.1605 1.0561 18.103 3 Median NaN NaN NaN 0 0 Median 1.1605 1.0561 NaN 1 0 Median 1.0005 0.97162 NaN 1 0 Median 1.5413 1.3744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10887000 5020800 5866200 0 0 0 213970 107690 106290 9254200 4346700 4907500 1418800 566410 852370 0 0 0 0 0 0 19307 2415 20126 100818;100819;100820 102418;102419;102420 102418 3 LDYGQHVVAGTPGR HACIGGTNVGEDIRKLDYGQHVVAGTPGRV KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI K L D G R V 1 1 0 1 0 1 0 3 1 0 1 0 0 0 1 0 1 0 1 2 0 0 14 0 1468.7423 P38919;I3L3H2 P38919 153 166 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2;3 5.5403E-08 118.76 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 1 2 5 5 1.1667 1.0528 11.81 17 Median 1.1877 1.1714 8.2532 2 0 Median 1.1967 1.0304 10.333 2 0 Median 1.1635 1.2671 NaN 1 0 Median 1.2153 1.044 1.1848 2 0 Median 1.0571 1.0638 12.274 5 0 Median 1.2438 1.0319 12.634 5 0 Median 234970000 100490000 134480000 12411000 5192200 7219200 11615000 5053000 6561600 9925600 4286400 5639200 117890000 47114000 70779000 49482000 22807000 26676000 33648000 16038000 17610000 19308 2278 20127 100821;100822;100823;100824;100825;100826;100827;100828;100829;100830;100831;100832;100833;100834;100835;100836;100837 102421;102422;102423;102424;102425;102426;102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437 102422 17 LDYHISVQNMMR YRERLYRVYKEVKNRLDYHISVQNMMRRKE KNRLDYHISVQNMMRRKEQEHMINWVEKHV R L D M R R 0 1 1 1 0 1 0 0 1 1 1 0 2 0 0 1 0 0 1 1 0 0 12 0 1505.7119 Q5QNZ2;P24539 Q5QNZ2 136 147 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3 1.244E-06 103.08 By MS/MS By matching 1 1 1.2908 1.1622 14.178 2 Median 1.1069 1.0513 NaN 1 0 Median 1.5053 1.2847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20910000 9139000 11771000 20105000 8819100 11286000 805010 319890 485120 0 0 0 0 0 0 0 0 0 0 0 0 19309 2124 20128 100838;100839 102438;102439 102438 2 LDYHKEQAAQLR MSLWVDKYRPCSLGRLDYHKEQAAQLRNLV LGRLDYHKEQAAQLRNLVQCGDFPHLLVYG R L D L R N 2 1 0 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 12 1 1470.7579 P40938 P40938 16 27 RFC3 Replication factor C subunit 3 yes yes 3 0.032375 30.438 By MS/MS By MS/MS By matching 1 1 1 1.0787 1.1545 41.072 3 Median 1.0787 1.1545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6838 1.4803 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.64328 0.66361 NaN 1 0 Median 2934600 1387100 1547400 1635900 813620 822320 0 0 0 0 0 0 915220 339000 576220 0 0 0 383420 234530 148890 19310 2294 20129 100840;100841;100842 102440;102441 102440 2 LDYILGLK RRLVRIGVLDEGKMKLDYILGLKIEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK K L D L K I 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 0 933.55352 P46781;B5MCT8;C9JM19 P46781 94 101 RPS9 40S ribosomal protein S9 yes no 2 0.0067369 69.998 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 4 1 1 3 2 1.2396 1.1363 21.613 14 Median 1.1419 1.0562 13.618 3 0 Median 1.1975 1.018 7.1921 4 0 Median 1.2114 1.14 NaN 1 0 Median 1.4063 1.1369 NaN 1 0 Median 1.3052 1.3298 32.339 3 0 Median 1.3373 1.0826 9.8863 2 0 Median 69941000 30952000 38989000 34664000 16049000 18615000 8094200 3514600 4579600 6636900 2751500 3885400 163400 75855 87545 12823000 5424900 7397900 7560500 3136400 4424100 19311 2345 20130 100843;100844;100845;100846;100847;100848;100849;100850;100851;100852;100853;100854;100855;100856 102442;102443;102444;102445;102446;102447;102448;102449;102450 102442 9 LDYITAEIKR VKQELGEARATVGKRLDYITAEIKRYESQL TVGKRLDYITAEIKRYESQLRDLERQSEQQ R L D K R Y 1 1 0 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1220.6765 O15212 O15212 80 89 PFDN6 Prefoldin subunit 6 yes yes 3 0.0097156 30.872 By MS/MS By matching 1 1 0.84964 0.79055 41.272 2 Median 1.0794 1.0585 NaN 1 0 Median 0.66877 0.59046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3680800 1951700 1729100 2022800 996900 1025900 1657900 954800 703150 0 0 0 0 0 0 0 0 0 0 0 0 19312 1530 20131 100857;100858 102451 102451 1 LDYLDLYLIHWPTGFKPGK GLVKGACQKTLSDLKLDYLDLYLIHWPTGF DLYLIHWPTGFKPGKEFFPLDESGNVVPSD K L D G K E 0 0 0 2 0 0 0 2 1 1 4 2 0 1 2 0 1 1 2 0 0 0 19 1 2275.2041 P15121;E9PCX2 P15121 102 120 AKR1B1 Aldose reductase yes no 3 0.067248 8.6005 By MS/MS 1 0.84504 0.76098 NaN 1 Median NaN NaN NaN 0 0 Median 0.84504 0.76098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8358800 4502300 3856500 0 0 0 8358800 4502300 3856500 0 0 0 0 0 0 0 0 0 0 0 0 19313 2015 20132 100859 102452 102452 1 LDYLGVSYGLTPR LPPLLLKLNERPAERLDYLGVSYGLTPRLL ERLDYLGVSYGLTPRLLKFWKRAGFVPVYL R L D P R L 0 1 0 1 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 13 0 1452.7613 Q9H0A0;A0A087WV29 Q9H0A0 706 718 NAT10 N-acetyltransferase 10 yes no 2 7.3272E-05 85.958 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 0.97007 0.93456 22.809 6 Median 1.3489 1.3556 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86363 0.93456 0.71381 2 0 Median 0.96971 0.81378 16.493 2 0 Median 1.181 1.2403 NaN 1 0 Median NaN NaN NaN 0 0 Median 21788000 10644000 11144000 1216600 404280 812320 0 0 0 17291000 8582700 8708500 722400 326930 395470 2557900 1330000 1227900 0 0 0 19314 3921 20133 100860;100861;100862;100863;100864;100865;100866 102453;102454;102455;102456;102457;102458 102457 6 LDYLSSLK FQGHGAGNLAGLKGRLDYLSSLKVKGLVLG LAGLKGRLDYLSSLKVKGLVLGPIHKNQKD R L D L K V 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 2 0 0 1 0 0 0 8 0 937.51205 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2 F5GZS6 217 224 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 0.013722 52.482 By MS/MS By matching 1 1 1.3096 1.2221 40.877 2 Median 1.6622 1.6318 NaN 1 0 Median 1.0318 0.91536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961600 1612000 2349600 2271500 807650 1463800 1690100 804310 885780 0 0 0 0 0 0 0 0 0 0 0 0 19315 1016 20134 100867;100868 102459;102460 102459 2 LDYWEDDLRR AWGNSAVSRPLEFWRLDYWEDDLRRRRRFV LEFWRLDYWEDDLRRRRRFVRNPLGSTHPE R L D R R R 0 2 0 3 0 0 1 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 10 1 1379.647 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 E9PEM5 1982 1991 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin yes no 3 0.011419 28.696 By MS/MS By matching 1 1 1.3173 1.3294 28.55 2 Median 0.99972 1.0864 NaN 1 0 Median 1.7357 1.6268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5477000 2380000 3097000 3368500 1498300 1870100 2108600 881740 1226800 0 0 0 0 0 0 0 0 0 0 0 0 19316 470 20135 100869;100870 102461 102461 1 LEAAAQVR LCLKPDLLDFTFEGKLEAAAQVRQATNQIV DFTFEGKLEAAAQVRQATNQIVMNCADIDI K L E V R Q 3 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 856.47667 E9PLK3;P55786;A6NEC2;E9PP11;E9PJY4;E9PPD4;E9PJF9;E9PPZ2 E9PLK3 76 83 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0035088 91.906 By MS/MS By MS/MS By matching 2 1 2 1.204 1.1569 14.594 5 Median 1.1512 1.1265 4.2425 2 0 Median 1.3382 1.1569 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3035 1.1048 28.629 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17710000 8047500 9662600 2629300 1249500 1379900 14559000 6563000 7995500 0 0 0 522250 234970 287280 0 0 0 0 0 0 19317 960 20136 100871;100872;100873;100874;100875 102462;102463;102464 102464 3 LEAADEGSGDVK IRKELEQIFCQFDSKLEAADEGSGDVKYHL DSKLEAADEGSGDVKYHLGMYHRRINRVTD K L E V K Y 2 0 0 2 0 0 2 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1189.5463 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 348 359 OGDH 2-oxoglutarate dehydrogenase, mitochondrial no no 2 0.00048458 77.379 By MS/MS By MS/MS By MS/MS 1 1 1 1.0482 1.0867 9.4297 3 Median 1.0307 1.0233 NaN 1 0 Median 1.454 1.2311 NaN 1 0 Median 1.0482 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13340000 5770900 7569100 2364300 1054900 1309400 10110000 4308900 5800900 865880 407040 458840 0 0 0 0 0 0 0 0 0 19318 912 20137 100876;100877;100878 102465;102466;102467;102468 102467 4 LEAAEER PPKKKDLSLEEIQKKLEAAEERRKSHEAEV SLEEIQKKLEAAEERRKSHEAEVLKQLAEK K L E E R R 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 816.39775 A2A2D0;P16949;A0A0J9YXY4;E5RIR6;A0A0J9YW36;E7EVN3;Q9NZ72;Q9H169;H7BZ55;E5RGX5;Q93045 A2A2D0 54 60 STMN1;STMN4;STMN3;STMN2 Stathmin;Stathmin-3;Stathmin-4;Putative ciliary rootlet coiled-coil protein-like 3 protein;Stathmin-2 no no 2 0.052482 38.962 By matching By MS/MS 1 1 1.0245 0.92918 2.5949 2 Median 0.96181 0.94639 NaN 1 0 Median 1.0913 0.91229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 819260 366200 453060 187620 90303 97319 631640 275900 355740 0 0 0 0 0 0 0 0 0 0 0 0 19319 496;843 20138 100879;100880 102469 102469 1 LEAALGEAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE RGQVAKLEAALGEAKKQLQDEMLRRVDAEN K L E A K K 3 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 900.49165 P02545;H0YAB0;Q3BDU5 P02545 172 180 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00076349 99.442 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 5 1.1253 1.0206 13.11 16 Median NaN NaN NaN 0 0 Median 1.1303 0.99311 NaN 1 0 Median 1.1476 1.1593 15.267 3 0 Median 1.3741 1.1654 17.091 3 0 Plateau 1.0246 1.0151 8.1458 4 0 Median 1.2524 1.0194 8.3835 5 0 Median 121960000 56709000 65246000 0 0 0 861440 376360 485080 35203000 17114000 18089000 10850000 4518800 6331000 45681000 22529000 23152000 29359000 12171000 17189000 19320 1834;3010 20139 100881;100882;100883;100884;100885;100886;100887;100888;100889;100890;100891;100892;100893;100894;100895;100896 102470;102471;102472;102473;102474;102475;102476;102477;102478;102479;102480;102481;102482;102483;102484;102485;102486;102487 102475 18 LEAALGEAKK TLEGELHDLRGQVAKLEAALGEAKKQLQDE GQVAKLEAALGEAKKQLQDEMLRRVDAENR K L E K K Q 3 0 0 0 0 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1028.5866 P02545;H0YAB0;Q3BDU5 P02545 172 181 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00056214 94.692 By MS/MS By matching By MS/MS By MS/MS 2 1 4 2 1.1576 1.1794 12.188 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1883 1.2968 8.1656 2 0 Median 1.5809 1.4598 NaN 1 0 Median 1.0433 1.1121 5.1048 4 0 Median 1.3469 1.2091 17.339 2 0 Median 40076000 18387000 21688000 0 0 0 0 0 0 5287300 2493000 2794300 232810 99446 133370 22942000 11230000 11712000 11614000 4565000 7048800 19321 1834;3010 20140 100897;100898;100899;100900;100901;100902;100903;100904;100905 102488;102489;102490;102491;102492;102493;102494;102495;102496;102497;102498;102499;102500;102501 102497 14 LEAASSALGGPTLTHAVTR SVSLHKKFIADCYTRLEAASSALGGPTLTH SSALGGPTLTHAVTRATKMLTATAMPTVAT R L E T R A 4 1 0 0 0 0 1 2 1 0 3 0 0 0 1 2 3 0 0 1 0 0 19 0 1850.985 Q9UPU5 Q9UPU5 877 895 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 3 3.0908E-08 74.519 By MS/MS By MS/MS 1 2 0.87351 0.72063 6.3691 3 Plateau 0.8534 0.801 NaN 1 0 Median 0.87011 0.71752 0.61196 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28952000 14623000 14330000 13320000 6944700 6375400 15632000 7677800 7954300 0 0 0 0 0 0 0 0 0 0 0 0 19322 4357 20141 100906;100907;100908 102502;102503;102504 102502 2 LEAATQQNQQLR VAEMARQELQETQERLEAATQQNQQLRAQL QERLEAATQQNQQLRAQLSLMAHPGEGDGL R L E L R A 2 1 1 0 0 4 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 12 0 1398.7215 A0A2Q2TH77;Q08379;A0A1W2PQY5 A0A2Q2TH77 663 674 GOLGA2 Golgin subfamily A member 2 yes no 2 4.309E-06 141.88 By MS/MS 1 1.1756 1.0029 NaN 1 Median NaN NaN NaN 0 0 Median 1.1756 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3190200 1342000 1848200 0 0 0 3190200 1342000 1848200 0 0 0 0 0 0 0 0 0 0 0 0 19323 355 20142 100909 102505;102506 102506 2 LEAAYLDLQR ILQESRMMIPDCQRRLEAAYLDLQRILENE DCQRRLEAAYLDLQRILENEKDLEEAEEYK R L E Q R I 2 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 10 0 1190.6295 E5RIW3;E5RJD8;O75347;E5RHG6 E5RIW3 47 56 TBCA Tubulin-specific chaperone A yes no 2 5.4366E-06 155.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.2592 1.0919 5.8421 7 Median 1.1743 1.1296 5.1289 2 0 Median 1.2742 1.0919 6.3478 3 0 Median 1.208 1.2208 NaN 1 1 Median 1.3538 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 272890000 121110000 151780000 101740000 45361000 56383000 140370000 61988000 78382000 29944000 13428000 16516000 832940 332980 499970 0 0 0 0 0 0 19324 852 20143 100910;100911;100912;100913;100914;100915;100916 102507;102508;102509;102510;102511;102512;102513;102514;102515;102516;102517;102518;102519 102510 13 LEADYDKK EDAYQYQNIFGPLVKLEADYDKKLKESQTQ IFGPLVKLEADYDKKLKESQTQDNITVRWD K L E K K L 1 0 0 2 0 0 1 0 0 0 1 2 0 0 0 0 0 0 1 0 0 0 8 1 980.48148 Q92900 Q92900 312 319 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.047972 50.127 By MS/MS 1 0.88576 0.82977 NaN 1 Median NaN NaN NaN 0 0 Median 0.88576 0.82977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1573400 758990 814400 0 0 0 1573400 758990 814400 0 0 0 0 0 0 0 0 0 0 0 0 19325 3564 20144 100917 102520 102520 1 LEAEGVPEVSEK MAELAKELPQVSFVKLEAEGVPEVSEKYEI FVKLEAEGVPEVSEKYEISSVPTFLFFKNS K L E E K Y 1 0 0 0 0 0 4 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 12 0 1285.6402 O76003 O76003 68 79 GLRX3 Glutaredoxin-3 yes yes 2 0.00026027 83.862 By MS/MS By MS/MS 1 1 0.86635 0.76834 9.7423 2 Median 0.89179 0.82313 NaN 1 0 Median 0.84164 0.71719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34790000 18332000 16458000 20439000 10818000 9621400 14351000 7514300 6836700 0 0 0 0 0 0 0 0 0 0 0 0 19326 1715 20145 100918;100919 102521;102522;102523;102524 102522 4 LEAEIATYR RQAQEYEALLNIKVKLEAEIATYRRLLEDG LNIKVKLEAEIATYRRLLEDGEDFNLGDAL K L E Y R R 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 CON__P05784;P05783;F8VZY9 P05783 373 381 KRT18 Keratin, type I cytoskeletal 18 no no 2 1.0459E-10 175.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 7 1.3105 1.1756 31.807 18 Median 1.4424 1.388 31.371 2 0 Median 1.5668 1.339 7.1919 2 0 Median 1.3105 1.3357 10.163 2 0 Median 1.3814 1.1819 9.2067 2 0 Median 1.4393 1.4281 54.945 3 0 Median 1.2171 1.0067 37.246 7 1 Median 804890000 340730000 464160000 68985000 30607000 38378000 59492000 22490000 37002000 299690000 126890000 172800000 204000000 87824000 116170000 64348000 26192000 38156000 108380000 46731000 61653000 + 19327 1869;749 20146 100920;100921;100922;100923;100924;100925;100926;100927;100928;100929;100930;100931;100932;100933;100934;100935;100936;100937 102525;102526;102527;102528;102529;102530;102531;102532;102533;102534;102535;102536;102537;102538;102539;102540;102541;102542;102543;102544;102545;102546 102526 21 LEAEIATYRR RQAQEYEALLNIKVKLEAEIATYRRLLEDG NIKVKLEAEIATYRRLLEDGEDFNLGDALD K L E R R L 2 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 1 1220.6513 CON__P05784;P05783;F8VZY9 P05783 373 382 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 2.7537E-05 147.51 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1.3087 1.3267 13.891 10 Median 1.349 1.3622 4.3136 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.263 1.1781 4.7011 2 0 Median 1.5022 1.6345 10.957 3 0 Plateau 1.276 1.1281 3.9126 2 0 Median 92946000 37472000 55475000 9543600 3728500 5815100 0 0 0 0 0 0 16535000 7072300 9462900 37256000 14125000 23131000 29612000 12546000 17066000 + 19328 1869;749 20147 100938;100939;100940;100941;100942;100943;100944;100945;100946;100947 102547;102548;102549;102550;102551;102552;102553;102554;102555;102556 102556 10 LEAELAAHEPAIQGVLDTGK RDLTGVQNLRKKHKRLEAELAAHEPAIQGV AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ R L E G K K 4 0 0 1 0 1 3 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 20 0 2061.0742 A0A0D9SF54;Q13813 Q13813 1809 1828 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.0071348 31.358 By MS/MS 1 0.47948 0.53116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47948 0.53116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8493600 5157100 3336500 0 0 0 0 0 0 8493600 5157100 3336500 0 0 0 0 0 0 0 0 0 19329 264;2838 20148 100948 102557 102557 1 LEAELAAHEPAIQGVLDTGKK RDLTGVQNLRKKHKRLEAELAAHEPAIQGV AHEPAIQGVLDTGKKLSDDNTIGKEEIQQR R L E K K L 4 0 0 1 0 1 3 2 1 1 3 2 0 0 1 0 1 0 0 1 0 0 21 1 2189.1692 A0A0D9SF54;Q13813 Q13813 1809 1829 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 4.4802E-18 105.67 By matching By matching By MS/MS 2 1 2 0.96498 0.9588 11.435 5 Median 1.015 1.0021 6.2408 2 0 Median 1.0368 0.98773 NaN 1 0 Median 0.72448 0.83926 11.212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43174000 22409000 20765000 9746500 4920100 4826400 5119200 2443800 2675400 28308000 15045000 13263000 0 0 0 0 0 0 0 0 0 19330 264;2838 20149 100949;100950;100951;100952;100953 102558;102559;102560;102561 102559 4 LEAELGNMQGLVEDFK NLRRQLETLGQEKLKLEAELGNMQGLVEDF EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L E F K N 1 0 1 1 0 1 3 2 0 0 3 1 1 1 0 0 0 0 0 1 0 0 16 0 1791.8713 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;H0YIB2 P05787 161 176 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.2376E-10 134.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 3 1 4 1.1914 1.1171 28.248 16 Median 1.0716 1.0224 NaN 1 0 Median 1.4842 1.2605 22.382 2 0 Median 1.1558 1.1085 9.8247 5 0 Median 1.0561 0.90583 15.091 3 0 Median 1.6437 1.5675 NaN 1 1 Median 1.3509 1.1373 50.214 4 2 Median 303100000 131300000 171800000 3379600 1533200 1846400 53952000 20252000 33701000 217240000 98086000 119160000 11993000 5576500 6416600 3702300 1448600 2253700 12830000 4408100 8421700 + 19331 750 20150;20151 100954;100955;100956;100957;100958;100959;100960;100961;100962;100963;100964;100965;100966;100967;100968;100969 102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574;102575;102576;102577;102578;102579;102580;102581;102582;102583;102584;102585 102584 273 24 LEAELGNMQGLVEDFKNK NLRRQLETLGQEKLKLEAELGNMQGLVEDF ELGNMQGLVEDFKNKYEDEINKRTEMENEF K L E N K Y 1 0 2 1 0 1 3 2 0 0 3 2 1 1 0 0 0 0 0 1 0 0 18 1 2034.0092 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;H0YIB2 P05787 161 178 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.002003 26.808 By MS/MS 1 1.0402 1.0898 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0402 1.0898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4282300 2280300 2002000 0 0 0 0 0 0 4282300 2280300 2002000 0 0 0 0 0 0 0 0 0 + 19332 750 20152 100970 102586;102587 102586 2 LEAEMEAAR QREQVDRNIREAKEKLEAEMEAARHEHQLM REAKEKLEAEMEAARHEHQLMLMRQDLMRR K L E A R H 3 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1018.4753 Q8WXF1 Q8WXF1 304 312 PSPC1 Paraspeckle component 1 yes yes 2 0.00091857 90.657 By MS/MS By MS/MS 2 2 0.97793 0.92052 19.493 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81387 0.84794 12.813 2 0 Median 1.2492 1.063 21.555 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11497000 5390200 6107000 0 0 0 0 0 0 9380600 4412200 4968400 2116500 978020 1138500 0 0 0 0 0 0 19333 3520 20153 100971;100972;100973;100974 102588;102589;102590;102591;102592 102589 5 LEAFHER TERRREREQREREQRLEAFHERKEKARLQR EQREREQRLEAFHERKEKARLQRERLQLEC R L E E R K 1 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 900.44537 Q14151 Q14151 651 657 SAFB2 Scaffold attachment factor B2 yes yes 2 0.017601 65.252 By MS/MS By MS/MS 2 1 0.92207 0.7692 19.812 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86151 0.90798 23.458 2 0 Median 0.92207 0.75261 NaN 1 0 Median 7685600 3599200 4086400 0 0 0 0 0 0 0 0 0 0 0 0 6784900 3160500 3624400 900730 438710 462020 19334 2859 20154 100975;100976;100977 102593;102594;102595;102596 102595 4 LEAGAMVLADR LTAAVTTDQETGERRLEAGAMVLADRGVVC GERRLEAGAMVLADRGVVCIDEFDKMSDMD R L E D R G 3 1 0 1 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 11 0 1144.591 P25205;J3KQ69;A0A499FHX9 P25205 393 403 MCM3 DNA replication licensing factor MCM3 yes no 2 0.00096639 61.65 By matching By MS/MS By matching 1 1 1 0.89073 0.94778 9.1347 3 Median 0.86994 0.83897 NaN 1 0 Median 1.1592 1.0032 NaN 1 0 Median 0.89073 0.94778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21214000 10906000 10307000 8689300 4537900 4151400 5228600 2496200 2732400 7295800 3872300 3423500 0 0 0 0 0 0 0 0 0 19335 2129 20155 100978;100979;100980 102597;102598 102597 2 LEAGDYADLVK KEALESVEVLIKNPKLEAGDYADLVKALKK KNPKLEAGDYADLVKALKKVVGKDTNVMLV K L E V K A 2 0 0 2 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1192.5976 Q14008 Q14008 312 322 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00013836 85.377 By MS/MS By MS/MS By matching 2 4 2 1.0967 1.022 12.762 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0795 1.1684 2.7489 2 1 Median 1.1192 0.98929 4.0423 4 0 Median 0.96918 1.0141 27.01 2 0 Median NaN NaN NaN 0 0 Median 103780000 48457000 55322000 0 0 0 0 0 0 64787000 30352000 34436000 20182000 9164200 11018000 18810000 8941600 9868100 0 0 0 19336 2850 20156 100981;100982;100983;100984;100985;100986;100987;100988 102599;102600;102601;102602;102603;102604 102602 6 LEAHSDWVR LWKEEEDGQWKEEQKLEAHSDWVRDVAWAP WKEEQKLEAHSDWVRDVAWAPSIGLPTSTI K L E V R D 1 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 9 0 1111.5411 P55735;A8MXL6 P55735 208 216 SEC13 Protein SEC13 homolog yes no 2 0.0017261 78.334 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.92174 0.88889 11.404 5 Median 0.9352 0.90757 NaN 1 0 Median 1.2232 1.0239 NaN 1 0 Median 0.91096 0.88889 NaN 1 0 Median 0.91482 0.78618 5.3214 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17374000 8511200 8863000 1313000 591640 721400 3120300 1285400 1834900 9911500 5424000 4487500 3029300 1210200 1819100 0 0 0 0 0 0 19337 2500 20157 100989;100990;100991;100992;100993 102605;102606;102607;102608;102609;102610;102611;102612 102606 8 LEAIEDDSVKETDSSSASAATPSK ANECWIQMMRVLQQKLEAIEDDSVKETDSS KETDSSSASAATPSKKKSLIDQFFGVEFET K L E S K K 4 0 0 3 0 0 3 0 0 1 1 2 0 0 1 6 2 0 0 1 0 0 24 1 2437.1344 A6NJA2;P54578 A6NJA2 169 192 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 3 3.4412E-35 128.55 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.83092 0.83152 10.412 6 Median 0.77861 0.73887 9.358 2 0 Median 0.88464 0.82987 9.3008 2 0 Median 0.83384 0.87587 NaN 1 0 Median 0.90886 0.90847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33983000 18284000 15699000 20646000 11367000 9279600 7638700 4167100 3471600 2117100 1057800 1059300 3581600 1692800 1888700 0 0 0 0 0 0 19338 523 20158 100994;100995;100996;100997;100998;100999 102613;102614;102615;102616;102617;102618 102615 6 LEAIEDDSVKETDSSSASAATPSKK ANECWIQMMRVLQQKLEAIEDDSVKETDSS ETDSSSASAATPSKKKSLIDQFFGVEFETT K L E K K K 4 0 0 3 0 0 3 0 0 1 1 3 0 0 1 6 2 0 0 1 0 0 25 2 2565.2294 A6NJA2;P54578 A6NJA2 169 193 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 4 0.020625 14.234 By MS/MS 1 0.70098 0.71532 NaN 1 Median 0.70098 0.71532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4848900 3330100 1518800 4848900 3330100 1518800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19339 523 20159 101000 102619;102620 102619 2 LEAIITPPPAK IHPELLAKKRGSKGKLEAIITPPPAKKAKS SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K L E A K K 2 0 0 0 0 0 1 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 11 0 1148.6805 O75367;D6RCF2 O75367 124 134 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.00022785 73.985 By MS/MS By MS/MS 3 2 0.61047 0.62708 14.999 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58974 0.59061 9.0216 3 0 Median 0.89588 0.73876 5.3497 2 0 Median 30781000 18356000 12425000 0 0 0 0 0 0 0 0 0 0 0 0 23164000 14562000 8601700 7617500 3794500 3823000 19340 1662 20160 101001;101002;101003;101004;101005 102621;102622;102623;102624;102625;102626;102627;102628;102629;102630;102631 102625 11 LEAIITPPPAKK IHPELLAKKRGSKGKLEAIITPPPAKKAKS KGKLEAIITPPPAKKAKSPSQKKPVSKKAG K L E K K A 2 0 0 0 0 0 1 0 0 2 1 2 0 0 3 0 1 0 0 0 0 0 12 1 1276.7755 O75367;D6RCF2 O75367 124 135 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 0.00023444 86.898 By MS/MS By matching 2 3 0.83799 0.71518 26.511 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55265 0.58515 7.2296 2 0 Median 0.96624 0.86116 20.553 3 0 Median 32689000 21622000 11067000 0 0 0 0 0 0 0 0 0 0 0 0 30503000 20633000 9870200 2185800 989010 1196800 19341 1662 20161 101006;101007;101008;101009;101010 102632;102633;102634;102635 102632 4 LEAIPNSGMDHTQR GYDSYGNICGQKNTKLEAIPNSGMDHTQRK KLEAIPNSGMDHTQRKYVFFLDPCNLDLIN K L E Q R K 1 1 1 1 0 1 1 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 14 0 1567.7413 Q8WWI5 Q8WWI5 76 89 SLC44A1 Choline transporter-like protein 1 yes yes 3 0.017867 22.803 By MS/MS By matching 1 1 0.7505 0.69193 6.3482 2 Median 0.71585 0.72369 NaN 1 0 Median 0.78683 0.66155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3043900 1585700 1458200 1988900 1136500 852460 1055000 449200 605770 0 0 0 0 0 0 0 0 0 0 0 0 19342 3509 20162 101011;101012 102636 102636 1 LEALDANSR EPESIRKWREEQMERLEALDANSRKQEAEW EEQMERLEALDANSRKQEAEWKEKAIKELE R L E S R K 2 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 987.49852 F8WF69;P09496 F8WF69 121 129 CLTA Clathrin light chain A yes no 2 0.00075813 99.802 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1693 1.0253 24.471 4 Median 1.1543 1.0795 NaN 1 0 Median 1.1846 0.98526 NaN 1 0 Median 0.65544 0.64373 NaN 1 0 Median 1.2792 1.067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21411000 9620800 11791000 6810200 3085200 3725000 6760000 3010800 3749200 2618400 1546200 1072200 5222700 1978500 3244200 0 0 0 0 0 0 19343 1098 20163 101013;101014;101015;101016 102637;102638;102639;102640;102641;102642 102637 6 LEALEEK LSIGVERIFSIVEQRLEALEEKIRTTETQV IFSIVEQRLEALEEKIRTTETQVLVASAQK R L E E K I 1 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 P12081;B3KWE1;B4DDD8;B4E1C5 P12081 397 403 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0075736 94.662 By MS/MS By MS/MS 1 1 1.3283 1.2063 31.84 2 Median 1.0048 0.96309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7559 1.5109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466300 2043000 2423300 2898700 1335800 1563000 0 0 0 0 0 0 1567600 707220 860330 0 0 0 0 0 0 19344 1975 20164 101017;101018 102643;102644 102644 2 LEALGTGWEELGR TRDQADPQCLFLRQRLEALGTGWEELGRMW QRLEALGTGWEELGRMWESRQGRLAQAHGF R L E G R M 1 1 0 0 0 0 3 3 0 0 3 0 0 0 0 0 1 1 0 0 0 0 13 0 1429.7201 O15020 O15020 1147 1159 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 6.203E-05 101.93 By MS/MS 1 0.58836 0.64926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58836 0.64926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4621400 3108900 1512500 0 0 0 0 0 0 4621400 3108900 1512500 0 0 0 0 0 0 0 0 0 19345 1512 20165 101019 102645 102645 1 LEALGVDR GDGGGGGFGSWLDGRLEALGVDRAVYGAYI GSWLDGRLEALGVDRAVYGAYILGILQEEE R L E D R A 1 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 871.47633 Q96MW1;Q86WV7;K7ER24 Q96MW1 30 37 CCDC43 Coiled-coil domain-containing protein 43 yes no 2 0.051971 51.346 By MS/MS 1 1.0597 1.0147 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0597 1.0147 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4422900 1970100 2452900 0 0 0 0 0 0 4422900 1970100 2452900 0 0 0 0 0 0 0 0 0 19346 3296 20166 101020 102646 102646 1 LEALITQTR MRLRSGGTEGLLAEKLEALITQTRAKQAAT GLLAEKLEALITQTRAKQAATMSEVEWRGR K L E T R A 1 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1043.5975 Q9UHB9 Q9UHB9 278 286 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.00075813 99.802 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.4342 1.2235 37.898 4 Median 0.65449 0.65746 NaN 1 0 Median 1.3231 1.144 NaN 1 0 Median 1.5547 1.5892 NaN 1 0 Median 1.564 1.3086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27959000 11389000 16570000 1493100 863050 630070 14972000 6200200 8772200 8092500 3030900 5061600 3400900 1294800 2106100 0 0 0 0 0 0 19347 4274 20167 101021;101022;101023;101024 102647;102648;102649;102650;102651 102647 5 LEALKEGGGSLAEYHAK LAPYSDDLRQRLTARLEALKEGGGSLAEYH ALKEGGGSLAEYHAKASEQLKALGEKAKPV R L E A K A 3 0 0 0 0 0 3 3 1 0 3 2 0 0 0 1 0 0 1 0 0 0 17 1 1771.9105 CON__P15497 CON__P15497 201 217 yes yes 3 3.2701E-15 115.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.11877 0.12713 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.11877 0.12713 NaN 1 1 Median NaN NaN NaN 0 0 Median 47473000 46884000 588320 16780000 16780000 0 5165200 5165200 0 5366200 5366200 0 8419100 8419100 0 11742000 11154000 588320 0 0 0 + 19348 758 20168 101025;101026;101027;101028;101029 102652;102653;102654;102655;102656 102655 5 LEALLEAAGIGK DGADLRTVDPETQARLEALLEAAGIGKLST QARLEALLEAAGIGKLSTADGKAFADPEVL R L E G K L 3 0 0 0 0 0 2 2 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1183.6812 H0YM23;O75179;A0A1W2PQ15;Q8IWZ3;E9PDP5 H0YM23 60 71 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.0030208 47.198 By MS/MS 1 1.0568 1.0171 NaN 1 Median 1.0568 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4024000 1904500 2119400 4024000 1904500 2119400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19349 1197;3329 20169 101030 102657;102658 102658 2 LEAMCFDGVK GQEYAQVIKMLGNGRLEAMCFDGVKRLCHI LGNGRLEAMCFDGVKRLCHIRGKLRKKVWI R L E V K R 1 0 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 10 0 1168.5257 P47813;X6RAC9 P47813 47 56 EIF1AX Eukaryotic translation initiation factor 1A, X-chromosomal yes no 2 0.00048844 73.985 By matching By MS/MS By MS/MS 2 2 2 1.1462 1.0429 41.969 6 Median 1.6684 1.5592 72.271 2 0 Median 1.2269 1.0521 0.071119 2 0 Median 0.94045 0.90064 19.577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52518000 25756000 26761000 39592000 19509000 20084000 3733600 1723100 2010500 9191600 4524300 4667300 0 0 0 0 0 0 0 0 0 19350 2355 20170 101031;101032;101033;101034;101035;101036 102659;102660;102661;102662 102662 4 LEAMCFDGVKR GQEYAQVIKMLGNGRLEAMCFDGVKRLCHI GNGRLEAMCFDGVKRLCHIRGKLRKKVWIN R L E K R L 1 1 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 11 1 1324.6268 P47813;X6RAC9 P47813 47 57 EIF1AX Eukaryotic translation initiation factor 1A, X-chromosomal yes no 2;3 0.00025914 77.677 By matching By MS/MS By MS/MS 1 3 2 0.9758 0.95837 26.428 6 Median 0.83591 0.82899 NaN 1 0 Median 1.234 1.0889 35.934 3 0 Median 0.96069 1.0001 24.084 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25193000 12041000 13152000 4873900 2318300 2555500 10931000 4950100 5981300 9387600 4772500 4615000 0 0 0 0 0 0 0 0 0 19351 2355 20171 101037;101038;101039;101040;101041;101042 102663;102664;102665;102666 102663 4 LEAPELPVK RVYGRNAAALSQALRLEAPELPVKVNPTKP LSQALRLEAPELPVKVNPTKPRRGSFEVTL R L E V K V 1 0 0 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 0 1 0 0 9 0 994.5699 A0A087WYP2;Q8IZQ5;H0YE28 A0A087WYP2 59 67 C11orf31;SELH Selenoprotein H yes no 2 0.00091857 90.657 By matching By MS/MS By MS/MS 1 1 1 1.0938 1.027 23.09 3 Median 1.0938 1.027 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0281 0.98042 NaN 1 0 Median 1.8476 1.4938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23509000 10843000 12666000 1133600 530210 603420 0 0 0 18717000 9014100 9702700 3658600 1299100 2359500 0 0 0 0 0 0 19352 85 20172 101043;101044;101045 102667;102668;102669 102669 3 LEAQETLNEEDKAK ITELLNKTDNRPLKKLEAQETLNEEDKAKI KLEAQETLNEEDKAKIAKSKKKMRQKVQRG K L E A K I 2 0 1 1 0 1 4 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 14 1 1616.7893 J3KPG5;F8VU39;Q9UIF9;H0YII3 J3KPG5 666 679 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 3 0.0059826 43.316 By MS/MS By MS/MS 1 1 1.2401 1.2212 4.6467 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1021 1.1817 NaN 1 1 Median 1.3954 1.262 NaN 1 1 Median 6165300 2676000 3489300 0 0 0 0 0 0 0 0 0 0 0 0 5038500 2192800 2845700 1126800 483150 643670 19353 1065 20173 101046;101047 102670;102671 102670 2 LEAQETLNK RLEHKKAKEDFLVYKLEAQETLNKGRQDSN DFLVYKLEAQETLNKGRQDSNSRYSALNVQ K L E N K G 1 0 1 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1044.5451 O00461;F8W785 O00461 94 102 GOLIM4 Golgi integral membrane protein 4 yes no 2 0.00070224 103.56 By MS/MS 2 1.1341 1.0074 7.5193 2 Median NaN NaN NaN 0 0 Median 1.1341 1.0074 7.5193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5944500 2803300 3141200 0 0 0 5944500 2803300 3141200 0 0 0 0 0 0 0 0 0 0 0 0 19354 1466 20174 101048;101049 102672;102673 102672 2 LEAQHQALVTLWHQLHVDMK LVPPPNQEAQEAVTRLEAQHQALVTLWHQL QALVTLWHQLHVDMKSLLAWQSLRRDVQLI R L E M K S 2 0 0 1 0 3 1 0 3 0 4 1 1 0 0 0 1 1 0 2 0 0 20 0 2396.2423 Q15149;H0YDN1 Q15149 1009 1028 PLEC Plectin yes no 3;4 6.6425E-11 93.269 By matching By MS/MS 1 2 1.4227 1.2265 7.1358 3 Plateau 1.2029 1.2265 NaN 1 0 Median 1.3694 1.2138 10.056 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43469000 16935000 26534000 620160 254300 365870 42849000 16680000 26168000 0 0 0 0 0 0 0 0 0 0 0 0 19355 2933 20175 101050;101051;101052 102674;102675 102674 2 LEAQLKKAHNIEDDSR SLEIAIEQKKEECSKLEAQLKKAHNIEDDS EAQLKKAHNIEDDSRMNPEFADQIKQLDKE K L E S R M 2 1 1 2 0 1 2 0 1 1 2 2 0 0 0 1 0 0 0 0 0 0 16 2 1865.9595 O15083 O15083 681 696 ERC2 ERC protein 2 yes yes 3 0.031732 16.427 By MS/MS 1 0.23028 0.25364 NaN 1 Median 0.23028 0.25364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4997400 3802600 1194800 4997400 3802600 1194800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19356 1519 20176 101053 102676 102676 1 LEASIER TNNIAQARRTVQQLRLEASIERIKVSKASA RRTVQQLRLEASIERIKVSKASADLMSYCE R L E E R I 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 816.43413 Q9UBI6 Q9UBI6 23 29 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 2 0.026748 52.716 By MS/MS By matching By matching 1 1 1 1.0426 0.84001 28.954 3 Median 0.86141 0.84001 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3018 1.3014 NaN 1 0 Median 1.0426 0.75297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2355900 1119600 1236200 1177100 585180 591950 0 0 0 538050 240230 297810 640680 294230 346450 0 0 0 0 0 0 19357 4239 20177 101054;101055;101056 102677 102677 1 LEATAASSVK VPASLLGMRRGLNSRLEATAASSVKTRMQK GLNSRLEATAASSVKTRMQKLAEQRRRWDN R L E V K T 3 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 10 0 975.52368 Q9NQW6;C9JJT6 Q9NQW6 134 143 ANLN Actin-binding protein anillin yes no 2 0.0044043 53.327 By MS/MS By MS/MS 1 3 0.93349 0.82426 17.618 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97554 1.0454 NaN 1 0 Median 0.89324 0.74785 12.701 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2704700 1481100 1223600 0 0 0 0 0 0 1561300 850890 710370 1143500 630180 513270 0 0 0 0 0 0 19358 4069 20178 101057;101058;101059;101060 102678;102679;102680 102679 3 LEATINELV KGQKVGEFSGANKEKLEATINELV______ GANKEKLEATINELV_______________ K L E L V - 1 0 1 0 0 0 2 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5441 P10599 P10599 97 105 TXN Thioredoxin yes yes 2 0.031845 48.504 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187630000 0 0 135440000 0 0 33252000 0 0 18938000 0 0 0 0 0 0 0 0 0 0 0 19359 1942 20179 101061;101062;101063 102681;102682;102683;102684 102683 4 LEATLQEEAAIQQEHR KVAEVEGEQVDNKAKLEATLQEEAAIQQEH EATLQEEAAIQQEHREKELQKRSEVAKDFE K L E H R E 3 1 0 0 0 3 4 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 16 0 1864.9279 O95202 O95202 466 481 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 5.6E-08 76.85 By MS/MS By MS/MS By MS/MS 2 1 1 1.233 1.0626 10.665 3 Median 1.0838 1.0253 NaN 1 0 Median 1.4475 1.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.233 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24340000 11506000 12834000 14601000 7376400 7225100 5617000 2308000 3308900 0 0 0 4121700 1822000 2299700 0 0 0 0 0 0 19360 1754 20180 101064;101065;101066;101067 102685;102686;102687;102688;102689 102686 5 LEATQLEGVAR LSEGGPPLRIAQRMRLEATQLEGVARRMTV QRMRLEATQLEGVARRMTVETDYCLLLALP R L E A R R 2 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1185.6354 Q96T58 Q96T58 3555 3565 SPEN Msx2-interacting protein yes yes 2 0.00062319 90.108 By MS/MS By MS/MS By MS/MS 1 1 1 1.3881 1.4629 36.994 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0634 1.1262 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.8118 1.9003 NaN 1 1 Median NaN NaN NaN 0 0 Median 11974000 5811300 6162800 0 0 0 0 0 0 7849100 4006700 3842400 0 0 0 4125000 1804600 2320400 0 0 0 19361 3741 20181 101068;101069;101070 102690;102691;102692 102690 3 LEAVSHTSDMHR DMQNLVERLERAVGRLEAVSHTSDMHRGYA VGRLEAVSHTSDMHRGYADSPSKAGAAPYV R L E H R G 1 1 0 1 0 0 1 0 2 0 1 0 1 0 0 2 1 0 0 1 0 0 12 0 1381.6408 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0S3;Q5T0R8 Q01518 18 29 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2;3 1.3907E-06 100.55 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.1094 0.97168 23.073 7 Median 1.1142 1.0956 8.827 3 0 Plateau 1.132 0.96271 1.3115 2 0 Median 1.5665 1.5926 NaN 1 0 Median 0.84333 0.74526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21818000 10115000 11703000 7402500 3481500 3921000 13999000 6460600 7538300 324390 126730 197660 92690 46252 46437 0 0 0 0 0 0 19362 2686 20182 101071;101072;101073;101074;101075;101076;101077 102693;102694;102695;102696;102697;102698;102699;102700 102698 8 LEAYQHLFYLLQTNPTYLAK QKGGLKALSKEKREKLEAYQHLFYLLQTNP HLFYLLQTNPTYLAKLIFQMPQNKSTKFMD K L E A K L 2 0 1 0 0 2 1 0 1 0 5 1 0 1 1 0 2 0 3 0 0 0 20 0 2425.2682 P46940;A0A0J9YXZ5;H0YLE8 P46940 969 988 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.058242 7.9922 By MS/MS 2 0.93323 0.83401 2.3259 2 Median NaN NaN NaN 0 0 Median 0.93323 0.83401 2.3259 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2825400 1825900 999470 0 0 0 2825400 1825900 999470 0 0 0 0 0 0 0 0 0 0 0 0 19363 2350 20183 101078;101079 102701 102701 1 LEDAADVYR AVEETKGELLLQLCRLEDAADVYRGLQERN LLQLCRLEDAADVYRGLQERNPENWAYYKG R L E Y R G 2 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1050.4982 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 240 248 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.00093589 89.698 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1892 1.1229 15.517 5 Median 1.1615 1.1229 NaN 1 0 Median 1.1409 0.97364 3.9902 2 0 Median 1.3117 1.4072 NaN 1 0 Median 1.3777 1.1872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26070000 11893000 14177000 5860600 2618300 3242400 14375000 6522500 7852300 3539500 1754700 1784700 2294900 997460 1297400 0 0 0 0 0 0 19364 213 20184 101080;101081;101082;101083;101084 102702;102703;102704;102705;102706 102703 5 LEDELNR VKIKVLEQDKARLQRLEDELNRAKSTLEAE QDKARLQRLEDELNRAKSTLEAETRVKQRL R L E N R A 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 887.43486 P15924 P15924 1832 1838 DSP Desmoplakin yes yes 2 4.2489E-13 143.37 By MS/MS 1 0.67373 0.69265 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67373 0.69265 NaN 1 1 Median NaN NaN NaN 0 0 Median 10453000 6458100 3995100 0 0 0 0 0 0 0 0 0 0 0 0 10453000 6458100 3995100 0 0 0 19365 2021 20185 101085 102707 102707 1 LEDFRDYRR EDRVPQKTIQEMQQKLEDFRDYRRVHKPPK QEMQQKLEDFRDYRRVHKPPKVQEKCQLEI K L E R R V 0 3 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 9 2 1268.6262 O43707;K7EJH8;P12814;H9KV75;P35609;A0A494C1A0;Q08043;F6THM6;A0A087WSZ2 O43707 332 340 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 3 0.042135 21.746 By MS/MS 1 1.1944 1.484 NaN 1 Median 1.1944 1.484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24415000 11544000 12871000 24415000 11544000 12871000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19366 1585;1983 20186 101086 102708;102709 102709 2 LEDIFQQEFSTPSR YGSLIPLSTDEVVEKLEDIFQQEFSTPSRK KLEDIFQQEFSTPSRKGLVLQLIQSYQRMP K L E S R K 0 1 0 1 0 2 2 0 0 1 1 0 0 2 1 2 1 0 0 0 0 0 14 0 1695.8104 Q9H4L4;A0A087X0R7;J3QL36 Q9H4L4 343 356 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 yes no 2 0.0004518 69.979 By MS/MS By matching 1 1 1.149 1.1014 5.1298 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0666 1.142 NaN 1 0 Median 1.2378 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2711000 1171300 1539700 0 0 0 0 0 0 2462600 1077000 1385700 248330 94282 154050 0 0 0 0 0 0 19367 3966 20187 101087;101088 102710 102710 1 LEDLEVIQHR DEKEQWLNNMQIPEKLEDLEVIQHRFESLE QIPEKLEDLEVIQHRFESLEPEMNNQASRV K L E H R F 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1250.6619 Q01082;A0A087WUZ3 Q01082 881 890 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 5.0124E-18 160.88 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1.104 0.99622 13.144 9 Median NaN NaN NaN 0 0 Median 1.2615 1.0421 7.4579 3 1 Median 0.90899 0.99205 10.468 2 1 Median 1.104 0.97068 8.8998 3 1 Plateau 1.2118 1.2731 NaN 1 1 Median NaN NaN NaN 0 0 Median 47992000 24632000 23360000 0 0 0 14373000 7037600 7334900 23184000 12530000 10653000 7088200 3501200 3586900 3347500 1562600 1784900 0 0 0 19368 2681 20188 101089;101090;101091;101092;101093;101094;101095;101096;101097 102711;102712;102713;102714;102715;102716;102717;102718;102719;102720;102721 102713 11 LEDLIVK PYVMNRGSTPYGGVKLEDLIVKDGLTDVYN STPYGGVKLEDLIVKDGLTDVYNKIHMGSC K L E V K D 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 P24752;H0YEL7 P24752 175 181 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 0.0066125 92.467 By MS/MS By MS/MS By MS/MS 1 1 1 0.96619 0.99757 19.521 3 Median 0.92748 0.85966 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96619 0.99757 NaN 1 0 Median 1.4912 1.2659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39544000 18507000 21037000 12096000 5888700 6207100 0 0 0 22336000 10518000 11818000 5111900 2099700 3012200 0 0 0 0 0 0 19369 2126 20189 101098;101099;101100 102722;102723;102724;102725;102726 102724 5 LEDLIVKDGLTDVYNK PYVMNRGSTPYGGVKLEDLIVKDGLTDVYN EDLIVKDGLTDVYNKIHMGSCAENTAKKLN K L E N K I 0 0 1 3 0 0 1 1 0 1 3 2 0 0 0 0 1 0 1 2 0 0 16 1 1833.9724 P24752;H0YEL7 P24752 175 190 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 3 0.0027568 28.546 By matching By MS/MS By matching 1 1 1 1.6049 1.4559 24.529 3 Median NaN NaN NaN 0 0 Median 1.6049 1.4559 NaN 1 0 Median 0.93414 1.018 NaN 1 0 Median 1.8283 1.628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14277000 7395900 6881400 0 0 0 1541100 480470 1060600 12498000 6835600 5662600 237980 79874 158110 0 0 0 0 0 0 19370 2126 20190 101101;101102;101103 102727 102727 1 LEDLLQDSMDEKEQLIQSK IKRKYSCDHNTSLSRLEDLLQDSMDEKEQL LQDSMDEKEQLIQSKSSVASLVGRSKTIVQ R L E S K S 0 0 0 3 0 3 3 0 0 1 4 2 1 0 0 2 0 0 0 0 0 0 19 1 2261.1097 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5 H3BPE1 819 837 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.4876E-08 81.723 By MS/MS By MS/MS By matching 2 1 1 1.0869 1.1542 32.176 4 Median 0.84436 0.86498 45.456 2 0 Median 1.3176 1.2511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95403 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median 17667000 10119000 7547900 15709000 9209800 6499200 919410 479240 440170 0 0 0 0 0 0 1038400 429930 608490 0 0 0 19371 1220 20191 101104;101105;101106;101107 102728;102729 102728 2 LEDLPAEQWNHATVR YHVVTLKIQLQSCSKLEDLPAEQWNHATVR LEDLPAEQWNHATVRNALKELLKEMNQSTL K L E V R N 2 1 1 1 0 1 2 0 1 0 2 0 0 0 1 0 1 1 0 1 0 0 15 0 1777.8747 C9JR56;Q9UPW6 C9JR56 103 117 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 yes no 3 0.028284 27.208 By MS/MS 1 0.95885 1.0198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95885 1.0198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7637400 3034700 4602700 0 0 0 0 0 0 7637400 3034700 4602700 0 0 0 0 0 0 0 0 0 19372 719 20192 101108 102730 102730 1 LEDRDNWISVDSVTSEIK FDEDTGLPAHARYVKLEDRDNWISVDSVTS RDNWISVDSVTSEIKLAKLPDFESRYVQNG K L E I K L 0 1 1 3 0 0 2 0 0 2 1 1 0 0 0 3 1 1 0 2 0 0 18 1 2105.0277 Q14126 Q14126 431 448 DSG2 Desmoglein-2 yes yes 3 5.1791E-05 45.704 By matching By MS/MS 2 1 1.0046 1.1467 26.674 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1175 1.2766 15.175 2 0 Median NaN NaN NaN 0 0 Median 0.75936 0.83632 NaN 1 0 Median NaN NaN NaN 0 0 Median 6022900 3121500 2901400 0 0 0 0 0 0 1921400 935780 985650 0 0 0 4101500 2185700 1915800 0 0 0 19373 2855 20193 101109;101110;101111 102731 102731 1 LEDSSNQVTQAVAK DSEELTQRWDSLVQRLEDSSNQVTQAVAKL RLEDSSNQVTQAVAKLGMSQIPQKDLLETV R L E A K L 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 14 0 1488.742 P46939 P46939 628 641 UTRN Utrophin yes yes 2 0.0012399 64.374 By MS/MS 1 1.3423 1.3326 NaN 1 Median 1.3423 1.3326 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3692100 1630800 2061400 3692100 1630800 2061400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19374 2349 20194 101112 102732 102732 1 LEDTENWLYEDGEDQPK EKFVSEDDRNSFTLKLEDTENWLYEDGEDQ DTENWLYEDGEDQPKQVYVDKLAELKNLGQ K L E P K Q 0 0 1 3 0 1 4 1 0 0 2 1 0 0 1 0 1 1 1 0 0 0 17 0 2079.8909 P34932;A0A087WYC1 P34932 652 668 HSPA4 Heat shock 70 kDa protein 4 yes no 2 2.0572E-10 102.62 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.0155 0.86855 19.821 5 Median 0.89186 0.86321 NaN 1 0 Median 1.0766 0.94053 29.32 2 0 Median 1.0924 1.1983 NaN 1 0 Median 1.0155 0.86855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16961000 8368400 8592900 11118000 5645900 5472300 2355100 1097100 1258000 3162700 1462900 1699900 325300 162580 162720 0 0 0 0 0 0 19375 2230 20195 101113;101114;101115;101116;101117 102733;102734;102735 102734 3 LEDVLPLAFTR RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP PQVKLEDVLPLAFTRLCEPKEASYSLIRKY K L E T R L 1 1 0 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 0 1 0 0 11 0 1272.7078 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 259 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00017071 104.22 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 5 2 4 2 0.77557 0.81488 28.191 15 Median NaN NaN NaN 0 0 Median 0.78602 0.71519 27.179 2 0 Median 0.6618 0.67687 16.925 5 0 Median 1.556 1.3137 50.666 2 0 Median 0.75363 0.77445 10.625 4 0 Median 1.1742 0.99545 15.405 2 0 Median 85289000 48636000 36653000 0 0 0 1358100 623430 734630 31640000 18023000 13617000 460670 200070 260600 45901000 26965000 18935000 5929900 2823800 3106100 19376 3075 20196 101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130;101131;101132 102736;102737;102738;102739;102740;102741;102742;102743;102744;102745 102740 10 LEEAEKAADESER ELDRAQERLATALQKLEEAEKAADESERGM QKLEEAEKAADESERGMKVIENRALKDEEK K L E E R G 3 1 0 1 0 0 5 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 13 1 1475.674 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 77 89 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 2;3 0.00051835 84.658 By MS/MS By MS/MS 2 1 1.0549 1.0549 7.3495 3 Median 1.069 1.0686 1.825 2 0 Median 1.0054 0.94275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14118000 6424300 7693900 12958000 5867300 7091100 1159800 557000 602820 0 0 0 0 0 0 0 0 0 0 0 0 + 19377 63;1303;2629;1193;1249 20197 101133;101134;101135 102746;102747;102748;102749;102750;102751 102749 6 LEEANGNTQMVEK ENIPTDRHIWITAAKLEEANGNTQMVEKII AKLEEANGNTQMVEKIIDRAITSLRANGVE K L E E K I 1 0 2 0 0 1 3 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 13 0 1461.677 O94906 O94906 473 485 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00049996 73.781 By MS/MS By MS/MS By MS/MS 1 1 1 0.99206 0.88058 7.8095 3 Median NaN NaN NaN 0 0 Median 0.99206 0.8591 NaN 1 1 Median 0.8335 0.88058 NaN 1 0 Median 1.1876 0.99406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4118800 2083400 2035400 0 0 0 1368600 795060 573540 1795300 857730 937520 954940 430570 524370 0 0 0 0 0 0 19378 1735 20198 101136;101137;101138 102752;102753;102754;102755 102754 4 LEEDDGDVAMSDAQDGPR NRRSGRGGSGIRSSRLEEDDGDVAMSDAQD DDGDVAMSDAQDGPRVRYNPYTTRPNRRGD R L E P R V 2 1 0 5 0 1 2 2 0 0 1 0 1 0 1 1 0 0 0 1 0 0 18 0 1918.7851 Q9UBU9;E9PIN3;E9PQA4 Q9UBU9 52 69 NXF1 Nuclear RNA export factor 1 yes no 2 0.00057329 53.252 By MS/MS 1 1.0489 0.87545 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0489 0.87545 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579300 734200 845100 0 0 0 0 0 0 0 0 0 1579300 734200 845100 0 0 0 0 0 0 19379 4249 20199 101139 102756 102756 1 LEEDINSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDINSSMTNSTAA MTNSTAASRPPVTLRLVVPATQCGSLIGKG K L E L R L 2 2 2 1 0 0 2 0 0 1 2 0 1 0 2 4 3 0 0 1 0 0 23 1 2488.2228 Q15365 Q15365 79 101 PCBP1 Poly(rC)-binding protein 1 yes yes 3 1.3653E-35 147.9 By MS/MS By matching 2 1 0.64971 0.6659 4.2917 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64833 0.67057 0.98668 2 0 Median 0.70789 0.62314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48246000 29195000 19051000 0 0 0 0 0 0 47412000 28752000 18659000 834280 442240 392030 0 0 0 0 0 0 19380 2941 20200 101140;101141;101142 102757;102758;102759;102760 102758 4 LEEDISSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDISSSMTNSTAA MTNSTAASRPPVTLRLVVPASQCGSLIGKG K L E L R L 2 2 1 1 0 0 2 0 0 1 2 0 1 0 2 5 3 0 0 1 0 0 23 1 2461.2119 H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;H3BND9;Q15366 Q15366 79 101 PCBP2 Poly(rC)-binding protein 2 no no 3 7.248E-18 78.088 By matching By MS/MS By matching 1 3 1 0.71668 0.66929 16.745 5 Median NaN NaN NaN 0 0 Median 0.71668 0.66929 NaN 1 0 Median 0.71722 0.74345 10.519 3 0 Median 0.57048 0.50218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52830000 31246000 21583000 0 0 0 439070 226340 212720 49969000 29484000 20485000 2421800 1536300 885540 0 0 0 0 0 0 19381 2942;1077 20201;20202 101143;101144;101145;101146;101147 102761;102762;102763 102763 363 3 LEEEALR ______________________________ ATTAGVGRLEEEALRRKERLKALREKTGRK R L E L R R 1 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 858.4447 C9JUN5;J3KR35;Q8WUD4;S4R331 C9JUN5 11 17 CCDC12 Coiled-coil domain-containing protein 12 yes no 2 0.0068083 97.071 By MS/MS 1 0.6509 0.61755 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6509 0.61755 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2789600 1624900 1164700 0 0 0 0 0 0 2789600 1624900 1164700 0 0 0 0 0 0 0 0 0 19382 725 20203 101148 102764 102764 1 LEEEEDGKLK KKIKTEDTKKEKKRKLEEEEDGKLKKPKNK EKKRKLEEEEDGKLKKPKNKDKDKKVPEPD K L E L K K 0 0 0 1 0 0 4 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1188.5874 P11387 P11387 165 174 TOP1 DNA topoisomerase 1 yes yes 2 0.030947 67.993 By matching By MS/MS 1 1 1.1488 1.2147 17.588 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93722 1.0727 NaN 1 0 Median 1.4081 1.3756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3164800 1493800 1671000 0 0 0 0 0 0 2306900 1186500 1120400 857930 307320 550610 0 0 0 0 0 0 19383 1962 20204 101149;101150 102765 102765 0 LEEELANLKDESKK AALINRKELLQRVSRLEEELANLKDESKKE RLEEELANLKDESKKEIPLSETERGEVEED R L E K K E 1 0 1 1 0 0 4 0 0 0 3 3 0 0 0 1 0 0 0 0 0 0 14 2 1644.857 Q14789;E7EU81;H0Y867 Q14789 1012 1025 GOLGB1 Golgin subfamily B member 1 yes no 3 8.7668E-06 141.54 By MS/MS By MS/MS 1 1 1.3522 1.4999 13.201 2 Median 1.1566 1.3662 NaN 1 0 Median 1.5807 1.6466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16724000 7899100 8824900 2985600 1561500 1424000 13738000 6337500 7400900 0 0 0 0 0 0 0 0 0 0 0 0 19384 2900 20205 101151;101152 102766;102767 102767 2 LEEEQIILEDQNCK KLQLEKVTTEAKLKKLEEEQIILEDQNCKL KLEEEQIILEDQNCKLAKEKKLLEDRIAEF K L E C K L 0 0 1 1 1 2 4 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 14 0 1759.8298 P35579 P35579 976 989 MYH9 Myosin-9 yes yes 2 0.00014046 80.763 By MS/MS 1 0.97688 0.86602 NaN 1 Median NaN NaN NaN 0 0 Median 0.97688 0.86602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6322000 3080300 3241700 0 0 0 6322000 3080300 3241700 0 0 0 0 0 0 0 0 0 0 0 0 19385 2244 20206 101153 102768;102769 102769 2 LEEGEVAMGR SSKTLLCLSLTGPHKLEEGEVAMGRVVKVT TGPHKLEEGEVAMGRVVKVTPNEGLTVSFP K L E G R V 1 1 0 0 0 0 3 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1089.5125 Q14690;A0A3B3IUD7 Q14690 1227 1236 PDCD11 Protein RRP5 homolog yes no 2 0.0004183 88.948 By MS/MS By MS/MS 1 1 1.0017 0.96224 21.492 2 Median NaN NaN NaN 0 0 Median 0.98919 0.82658 NaN 1 1 Median 1.0144 1.1202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5584600 2499200 3085400 0 0 0 1178500 582740 595790 4406100 1916400 2489600 0 0 0 0 0 0 0 0 0 19386 448 20207 101154;101155 102770;102771 102770 2 LEEGLVNNKYDTALNLLK VNLGVLAQKSDFCLKLEEGLVNNKYDTALN GLVNNKYDTALNLLKESGPSGIETELRSLS K L E L K E 1 0 3 1 0 0 2 1 0 0 5 2 0 0 0 0 1 0 1 1 0 0 18 1 2046.0997 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 775 792 WDR36 WD repeat-containing protein 36 yes no 3 0.034861 14.041 By matching By MS/MS By matching By matching 1 2 1 1 1.3047 1.1577 16.268 5 Median NaN NaN NaN 0 0 Median 1.5028 1.4281 NaN 1 0 Median 0.97591 1.1171 5.0444 2 0 Median 1.5897 1.553 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3047 1.1143 NaN 1 0 Median 9194400 3982100 5212200 0 0 0 1637900 616390 1021500 6436400 2918600 3517800 488640 211070 277570 0 0 0 631410 236090 395320 19387 188 20208 101156;101157;101158;101159;101160 102772;102773 102773 2 LEEGPPVTTVLTR ANDATFEIKKCDLHRLEEGPPVTTVLTRED HRLEEGPPVTTVLTREDGLKYYRMMQTVRR R L E T R E 0 1 0 0 0 0 2 1 0 0 2 0 0 0 2 0 3 0 0 2 0 0 13 0 1410.7718 P08559;Q5JPU0;Q5JPT9;Q5JPU1;Q5JPU2 P08559 46 58 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 2 1.3713E-06 160.36 By MS/MS By MS/MS By matching 1 1 1 0.73494 0.76251 8.8003 3 Median 0.67056 0.67231 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73494 0.79647 NaN 1 0 Median 0.88313 0.76251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46412000 28122000 18290000 40648000 24907000 15741000 0 0 0 5244600 2966300 2278300 519360 248700 270660 0 0 0 0 0 0 19388 1902 20209 101161;101162;101163 102774;102775;102776;102777 102776 4 LEEGSELEK FVECLDCEDAEEFVRLEEGSELEKKLVAIR AEEFVRLEEGSELEKKLVAIRHETRIHILN R L E E K K 0 0 0 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1032.4975 Q92621;U3KQ97 Q92621 966 974 NUP205 Nuclear pore complex protein Nup205 yes no 2 1.8185E-07 130.75 By MS/MS By MS/MS 1 1 1.087 1.084 6.0156 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94271 1.0388 NaN 1 1 Median 1.2534 1.1311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21940000 9530500 12409000 0 0 0 0 0 0 17949000 7905100 10044000 3990400 1625300 2365100 0 0 0 0 0 0 19389 3547 20210 101164;101165 102778;102779 102779 2 LEEGSELEKK FVECLDCEDAEEFVRLEEGSELEKKLVAIR EEFVRLEEGSELEKKLVAIRHETRIHILNL R L E K K L 0 0 0 0 0 0 4 1 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1160.5925 Q92621;U3KQ97 Q92621 966 975 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.046725 33.263 By MS/MS 1 1.0004 1.1468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0004 1.1468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292400 639120 653280 0 0 0 0 0 0 1292400 639120 653280 0 0 0 0 0 0 0 0 0 19390 3547 20211 101166 102780 102780 1 LEEIEADKAPAR AEGSEAAELAEIYAKLEEIEADKAPARASV YAKLEEIEADKAPARASVILAGLGFTPKMQ K L E A R A 3 1 0 1 0 0 3 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 12 1 1340.6936 Q9NUQ8 Q9NUQ8 295 306 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 3 0.0010415 46.592 By MS/MS By matching By matching By matching 1 2 1 1 0.96837 0.97206 30.76 5 Median 1.1277 1.1461 NaN 1 0 Median 0.74843 0.71721 42.999 2 0 Median 0.97163 1.0322 NaN 1 0 Median 0.7939 0.77124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4892500 2267600 2624900 913330 358530 554810 1234100 656790 577280 2518200 1125500 1392700 226890 126760 100130 0 0 0 0 0 0 19391 4119 20212 101167;101168;101169;101170;101171 102781 102781 1 LEEIKENAQDTMR LLAPEAGSHPQQTQKLEEIKENAQDTMRQI QKLEEIKENAQDTMRQINKKGFWSYGPVIL K L E M R Q 1 1 1 1 0 1 3 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 13 1 1575.7563 Q8NFQ8 Q8NFQ8 196 208 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 2;3 5.3478E-09 126.1 By MS/MS By MS/MS 3 3 1.2119 1.1544 9.2671 6 Median 1.183 1.1861 11.969 3 2 Plateau 1.348 1.2298 4.698 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38340000 16818000 21522000 20633000 9701100 10932000 17707000 7117300 10589000 0 0 0 0 0 0 0 0 0 0 0 0 19392 3440 20213 101172;101173;101174;101175;101176;101177 102782;102783;102784;102785;102786;102787 102785 6 LEEIKLLK L E L K 0 0 0 0 0 0 2 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 8 1 984.62193 REV__A0A2R8YCU7 yes no 2 0.012939 105.39 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1.3063 1.266 12.65 8 Median 1.5421 1.5501 NaN 1 0 Median 1.3105 1.266 0 2 0 Median 0.96542 1.1167 0 2 0 Median 1.1292 1.0603 NaN 1 0 Median 1.3022 1.3887 NaN 1 0 Median 1.4614 1.3041 NaN 1 0 Median 34265000 16612000 17653000 2867300 1104300 1763100 7094800 2922200 4172500 18149000 9825200 8324100 2684700 1213300 1471400 2930400 1328000 1602400 538100 218690 319410 + 19393 4513 20214 101178;101179;101180;101181;101182;101183;101184;101185 102788;102789;102790 102788 3 LEEIPLIK KNQEKKIDYFERAKRLEEIPLIKSAYEEQR YFERAKRLEEIPLIKSAYEEQRIKDMDLWE R L E I K S 0 0 0 0 0 0 2 0 0 2 2 1 0 0 1 0 0 0 0 0 0 0 8 0 953.57973 Q14152 Q14152 704 711 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.01208 55.676 By MS/MS By matching By matching 2 2 1 1.0006 0.97876 5.5543 5 Median 0.9494 0.94026 5.6761 2 0 Median 1.1606 1.0078 1.1082 2 0 Median NaN NaN NaN 0 0 Median 1.0006 0.90555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13837000 6917900 6918800 10782000 5404500 5377200 2939200 1450900 1488300 0 0 0 115780 62492 53285 0 0 0 0 0 0 19394 2860 20215 101186;101187;101188;101189;101190 102791;102792 102791 2 LEEIQQQILQQK LKALSPSDSLEIFTKLEEIQQQILQQKHSM FTKLEEIQQQILQQKHSMILLENQIGCLTP K L E Q K H 0 0 0 0 0 5 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1496.8199 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1783 1794 SYNE2 Nesprin-2 yes no 2 4.3797E-06 104.06 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.314 1.2543 19.761 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82161 0.87895 NaN 1 0 Median 1.4325 1.362 NaN 1 0 Median 1.2312 1.3002 NaN 1 0 Median 1.4023 1.2101 NaN 1 0 Median 13587000 6579700 7007700 0 0 0 0 0 0 9396300 4739300 4657100 1278700 534080 744620 2548300 1159900 1388400 364000 146460 217540 19395 3521 20216 101191;101192;101193;101194 102793;102794;102795 102793 3 LEELDADK HEDAECEKLMELYERLEELDADKAEMRASR LMELYERLEELDADKAEMRASRILHGLGFT R L E D K A 1 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 931.44984 Q9UG63;C9JHK9;C9JZV3 Q9UG63 196 203 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.046748 35.438 By MS/MS 1 0.89092 0.76582 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89092 0.76582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 937390 479320 458080 0 0 0 0 0 0 0 0 0 937390 479320 458080 0 0 0 0 0 0 19396 4262 20217 101195 102796;102797 102797 2 LEELDADKAEMR HEDAECEKLMELYERLEELDADKAEMRASR YERLEELDADKAEMRASRILHGLGFTPAMQ R L E M R A 2 1 0 2 0 0 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 12 1 1418.6711 Q9UG63;C9JHK9;C9JZV3 Q9UG63 196 207 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2;3 9.9849E-07 110.31 By matching By MS/MS 2 3 0.98995 0.95143 17.42 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1157 1.1844 17.467 2 0 Median 1.0377 0.95143 4.9412 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16028000 7255700 8772800 0 0 0 0 0 0 8845500 3995400 4850100 7183000 3260300 3922700 0 0 0 0 0 0 19397 4262 20218;20219 101196;101197;101198;101199;101200 102798;102799;102800 102799 1911 3 LEELEAK EEERQKREEEERIKRLEELEAKRKEEERLE EEEERIKRLEELEAKRKEEERLEQEKRERK R L E A K R 1 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 A0A087WUT6;O60841 A0A087WUT6 369 375 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.0030389 105.39 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 3 1.1188 0.98483 26.234 8 Median 1.0437 0.98696 NaN 1 0 Median 0.84357 0.73134 NaN 1 0 Median 1.6547 1.7626 NaN 1 1 Median 1.0512 0.95777 NaN 1 0 Median 1.1126 1.3047 NaN 1 0 Median 1.3066 1.092 8.9762 3 0 Plateau 12736000 6301600 6434700 3930300 1936500 1993700 3263200 1921000 1342200 1028100 418930 609160 1111100 523710 587360 880190 410880 469310 2523500 1090500 1433000 19398 35 20220 101201;101202;101203;101204;101205;101206;101207;101208 102801;102802;102803 102803 3 LEELEKEEELR GHNIADYIDPAIMKKLEELEKEEELRTAAG IMKKLEELEKEEELRTAAGEYDSVSESEDE K L E L R T 0 1 0 0 0 0 6 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1415.7144 Q9BZE4 Q9BZE4 450 460 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0029774 88.496 By MS/MS 1 0.74898 0.8249 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74898 0.8249 NaN 1 1 Median NaN NaN NaN 0 0 Median 4099200 2507400 1591800 0 0 0 0 0 0 0 0 0 0 0 0 4099200 2507400 1591800 0 0 0 19399 3898 20221 101209 102804 102804 1 LEELHVIDVK PLDRDNKELKAFNIRLEELHVIDVKFLYGC AFNIRLEELHVIDVKFLYGCQAPTICFVYQ R L E V K F 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1193.6656 Q16531;F5GY55;F5H2L3;F5GWI0 Q16531 159 168 DDB1 DNA damage-binding protein 1 yes no 2;3 0.00034793 111.61 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 2 1.2341 1.2284 44.131 11 Median 1.2341 1.2284 31.312 3 0 Median 1.6487 1.4482 56.385 3 0 Median 0.85013 0.91074 32.401 4 1 Median 1.5144 1.3181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72936000 29412000 43524000 18083000 7360100 10723000 13916000 5580600 8335700 30352000 13736000 16616000 10585000 2735000 7849600 0 0 0 0 0 0 19400 2985 20222 101210;101211;101212;101213;101214;101215;101216;101217;101218;101219;101220;101221;101222 102805;102806;102807;102808;102809;102810;102811;102812;102813;102814;102815;102816;102817 102816 11 LEELKESILADK CVSNLMVCNLAYSGKLEELKESILADKSLA SGKLEELKESILADKSLATRTDQDSRTALH K L E D K S 1 0 0 1 0 0 3 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 12 1 1386.7606 B1AJY5;B1AJY7;O75832;B1AJY6 B1AJY5 19 30 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 2;3 2.6735E-06 99.283 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0971 1.0026 19.995 7 Median 0.94936 0.95815 23.77 2 0 Median 1.1167 1.0205 14.939 3 0 Plateau 1.3783 1.4 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86833 0.91743 NaN 1 0 Median NaN NaN NaN 0 0 Median 66006000 32223000 33783000 48930000 23927000 25003000 12443000 5943000 6500000 1400400 582190 818200 0 0 0 3233100 1771300 1461800 0 0 0 19401 564 20223 101223;101224;101225;101226;101227;101228;101229 102818;102819;102820;102821;102822 102821 5 LEELQDILAK AFEDYISNATHMLSRLEELQDILAKKELPQ HMLSRLEELQDILAKKELPQDLEGARNMIE R L E A K K 1 0 0 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1170.6496 E7EWP2;O75962;F5H228 E7EWP2 175 184 TRIO Triple functional domain protein yes no 2 0.036552 32.142 By MS/MS By MS/MS 1 2 0.86986 0.85566 1.5384 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86986 0.85647 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86155 0.84454 1.8497 2 0 Median NaN NaN NaN 0 0 Median 259110000 133040000 126070000 0 0 0 0 0 0 5319200 2410700 2908400 0 0 0 253790000 130630000 123160000 0 0 0 19402 903 20224 101230;101231;101232 102823;102824;102825 102823 3 LEELTMDGAK FIGNRRELNEDKLEKLEELTMDGAKAKAIL DKLEKLEELTMDGAKAKAILDASRSSMGMD K L E A K A 1 0 0 1 0 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1105.5325 O00567;A0A494C128;H0YDU4;Q5JXT2 O00567 231 240 NOP56 Nucleolar protein 56 yes no 2 0.001817 62.463 By MS/MS By MS/MS By MS/MS 1 1 2 1.1725 1.1742 10.584 4 Median NaN NaN NaN 0 0 Median 1.4197 1.2139 NaN 1 0 Median 1.089 1.1357 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1607 1.1525 17.618 2 1 Median NaN NaN NaN 0 0 Median 22012000 9850500 12162000 0 0 0 3894700 1577900 2316800 6079500 2661900 3417700 0 0 0 12038000 5610800 6427100 0 0 0 19403 1472 20225;20226 101233;101234;101235;101236 102826;102827;102828;102829 102829 472 4 LEELYTK QSQNSGPGQPAVWHRLEELYTKKLWHQLTL GQPAVWHRLEELYTKKLWHQLTLQVLDFVQ R L E T K K 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 894.46985 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;E9PPD2;E9PQG3;F8W8J6 Q9UNM6 25 31 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.002489 116.54 By MS/MS By MS/MS By matching 1 1 2 1.2059 1.0547 11.317 4 Median 1.1887 1.1099 NaN 1 0 Median 1.2233 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1295 0.95608 14.942 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12492000 5268500 7223100 5346700 1971500 3375200 5245500 2393000 2852500 0 0 0 1899400 904120 995330 0 0 0 0 0 0 19404 4345 20227 101237;101238;101239;101240 102830;102831;102832 102831 3 LEEMGFK EQTHTRHYELYRRCKLEEMGFKDTDPDSKP YELYRRCKLEEMGFKDTDPDSKPFSLQETY K L E F K D 0 0 0 0 0 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 7 0 852.40514 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141 D6RGI3 302 308 SEPT11;SEPT6 Septin-11;Septin-6 no no 2 0.050156 86.086 By MS/MS By MS/MS 1 1 1.5223 1.3134 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5223 1.3134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1142200 506050 636120 0 0 0 0 0 0 0 0 0 1142200 506050 636120 0 0 0 0 0 0 19405 822;573 20228 101241;101242 102833;102834 102834 2 LEEMGFTDVGPENKPVSVQETYEAK EQTHTRHYELYRRCKLEEMGFTDVGPENKP PENKPVSVQETYEAKRHEFHGERQRKEEEM K L E A K R 1 0 1 1 0 1 5 2 0 0 1 2 1 1 2 1 2 0 1 3 0 0 25 1 2796.3164 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 327 351 SEPT10 Septin-10 yes no 3 2.3954E-05 35.016 By MS/MS 1 0.50664 0.52996 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50664 0.52996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9311400 6091400 3220100 0 0 0 0 0 0 9311400 6091400 3220100 0 0 0 0 0 0 0 0 0 19406 626 20229 101243 102835 102835 1 LEENIDNIKR MGQMQVLQMKSEHQKLEENIDNIKRNHNLA SEHQKLEENIDNIKRNHNLALGRQKGYEEE K L E K R N 0 1 2 1 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1242.6568 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1060 1069 RAD50 DNA repair protein RAD50 yes no 2;3 0.00017484 99.653 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.026 1.1625 25.081 7 Median NaN NaN NaN 0 0 Median 1.4185 1.3303 3.1244 2 2 Median 0.78465 0.88897 37.94 2 1 Median 1.1653 1.125 26.168 2 1 Median 0.96698 1.0941 NaN 1 0 Median NaN NaN NaN 0 0 Median 35238000 17365000 17874000 0 0 0 9915100 3940600 5974400 14512000 8394800 6117000 7484600 3400600 4084000 3326700 1628400 1698300 0 0 0 19407 3561 20230 101244;101245;101246;101247;101248;101249;101250 102836;102837;102838;102839;102840;102841;102842;102843;102844 102836 9 LEEPGNFVLK NIQDSIAKQIEICNRLEEPGNFVLKELHPF EICNRLEEPGNFVLKELHPFDLHAMQNIIL R L E L K E 0 0 1 0 0 0 2 1 0 0 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1144.6128 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1278 1287 SYNE2 Nesprin-2 yes no 2 0.069222 25.737 By MS/MS 1 0.61256 0.56694 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61256 0.56694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 524400 249210 275190 0 0 0 0 0 0 0 0 0 524400 249210 275190 0 0 0 0 0 0 19408 3521 20231 101251 102845 102845 1 LEEQDEFEK QAQLQRLGVLHVGQKLEEQDEFEKIYKNAW LHVGQKLEEQDEFEKIYKNAWADNANACAK K L E E K I 0 0 0 1 0 1 4 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1165.5139 Q9NTJ5;E9PGZ4;C9JV50 Q9NTJ5 424 432 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.041602 33.263 By MS/MS 2 1.1533 1.0094 1.6384 2 Median NaN NaN NaN 0 0 Median 1.1533 1.0094 1.6384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5637200 2525300 3111900 0 0 0 5637200 2525300 3111900 0 0 0 0 0 0 0 0 0 0 0 0 19409 4109 20232 101252;101253 102846 102846 1 LEEQEEDTFR PPPEPRSLTAEEVKRLEEQEEDTFRELRIF EEVKRLEEQEEDTFRELRIFLRNVTHRLAI R L E F R E 0 1 0 1 0 1 4 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1294.5677 Q6PL18;A0A0B4J211 Q6PL18 978 987 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.068234 56.563 By matching By MS/MS 2 1 1.0374 0.85273 34.614 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0269 1.0793 45.013 2 0 Median 1.0374 0.85273 NaN 1 0 Median 7659600 3642700 4016900 0 0 0 0 0 0 0 0 0 0 0 0 7040100 3346800 3693300 619430 295900 323530 19410 3177 20233 101254;101255;101256 102847 102847 0 LEEQLGR ALRALVKEQGDRICRLEEQLGRMENGDA__ EQGDRICRLEEQLGRMENGDA_________ R L E G R M 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 843.44503 Q9BR76;A9Z1Z3 Q9BR76 477 483 CORO1B;FER1L4 Coronin-1B;Fer-1-like protein 4 yes no 2 0.0073411 89.673 By MS/MS By MS/MS By matching By matching 1 1 1 2 1.3493 1.0699 9.8904 5 Median NaN NaN NaN 0 0 Median 1.2552 1.0699 NaN 1 0 Median 0.88792 0.93702 NaN 1 0 Median 1.3592 1.1866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4526 1.1219 8.4762 2 0 Median 12155000 5149700 7005100 0 0 0 3648800 1504900 2143900 987910 525590 462320 381340 173750 207590 0 0 0 7136800 2945500 4191300 19411 3792 20234 101257;101258;101259;101260;101261 102848;102849;102850 102849 3 LEEQLKETVEK DPPATEKTLLEEKVKLEEQLKETVEKYKRA EKVKLEEQLKETVEKYKRALADTENLRQRS K L E E K Y 0 0 0 0 0 1 4 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1344.7137 Q9HAV7 Q9HAV7 67 77 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 3 0.019843 39.73 By MS/MS 1 1.159 1.0617 NaN 1 Median NaN NaN NaN 0 0 Median 1.159 1.0617 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554700 799060 755610 0 0 0 1554700 799060 755610 0 0 0 0 0 0 0 0 0 0 0 0 19412 4013 20235 101262 102851 102851 1 LEEQLMK KTKKVVESKKKAVQRLEEQLMKLEVQATDR SKKKAVQRLEEQLMKLEVQATDREENKQIA R L E M K L 0 0 0 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 889.4579 P11387 P11387 694 700 TOP1 DNA topoisomerase 1 yes yes 2 0.0030738 122.79 By matching By MS/MS By MS/MS By MS/MS 1 2 4 1 1.3541 1.2398 31.132 7 Median NaN NaN NaN 0 0 Median 1.3983 1.2398 NaN 1 0 Median 1.3318 1.355 NaN 1 0 Median 1.4068 1.2057 41.353 4 0 Median NaN NaN NaN 0 0 Median 1.3432 1.1046 NaN 1 0 Median 30897000 13291000 17606000 0 0 0 1757200 700370 1056900 10346000 4512800 5833500 15166000 6623700 8542200 0 0 0 3627700 1454100 2173700 19413 1962 20236;20237 101263;101264;101265;101266;101267;101268;101269;101270 102852;102853;102854;102855;102856 102855 737 5 LEEQLQDLDVALK EWFCPPCQHKLLCEKLEEQLQDLDVALKKK EKLEEQLQDLDVALKKKERAERRKERLVYV K L E L K K 1 0 0 2 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1512.8035 Q96T23;H0YCN2;H0YDG9 Q96T23 947 959 RSF1 Remodeling and spacing factor 1 yes no 2 0.00058289 70.056 By MS/MS By matching 1 2 1.2067 1.1011 4.9988 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0602 1.1107 NaN 1 0 Median 1.2475 1.0569 5.791 2 0 Median 6866800 3026500 3840300 0 0 0 0 0 0 0 0 0 0 0 0 5722200 2486200 3236000 1144600 540340 604300 19414 3740 20238 101271;101272;101273 102857;102858 102858 2 LEEQWLSLNK VASVSCPELEGQIAKLEEQWLSLNKKIDHE GQIAKLEEQWLSLNKKIDHELHRLQALLKH K L E N K K 0 0 1 0 0 1 2 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 10 0 1258.6558 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4921 4930 SYNE2 Nesprin-2 yes no 2 0.012347 41.448 By matching By MS/MS By matching 2 1 1 0.78036 0.72242 57.725 4 Median NaN NaN NaN 0 0 Median 0.48353 0.42823 42.374 2 0 Median 0.84079 0.90319 NaN 1 0 Median 1.2982 1.1903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7097100 3767300 3329800 0 0 0 689850 449050 240800 6055400 3181500 2873900 351880 136740 215140 0 0 0 0 0 0 19415 3521 20239 101274;101275;101276;101277 102859 102859 1 LEESGWQVNNNMNHNMNK FQIEDVIHKFNNLIKLEESGWQVNNNMNHN SGWQVNNNMNHNMNKNVFRKKVVSGIASKP K L E N K N 0 0 6 0 0 1 2 1 1 0 1 1 2 0 0 1 0 1 0 1 0 0 18 0 2157.932 Q15398 Q15398 530 547 DLGAP5 Disks large-associated protein 5 yes yes 3 2.6743E-06 55.011 By MS/MS By matching 1 1 1.2388 1.2112 55.869 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6345 1.7979 NaN 1 0 Median 0.9389 0.8159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7388000 2889900 4498100 0 0 0 0 0 0 6086800 2267600 3819100 1301200 622230 678950 0 0 0 0 0 0 19416 2948 20240 101278;101279 102860;102861 102860 2 LEESSTIGQDQTLMER RPLKENPPNKMTQEKLEESSTIGQDQTLME EESSTIGQDQTLMERDTEGGAAEINCNGVI K L E E R D 0 1 0 1 0 2 3 1 0 1 2 0 1 0 0 2 2 0 0 0 0 0 16 0 1835.8571 H3BLV9;Q96SB4;D6RBF8 H3BLV9 346 361 SRPK1 SRSF protein kinase 1 yes no 2 9.6073E-07 93.011 By MS/MS By MS/MS 1 1 0.95882 0.87059 32.521 2 Median 1.1449 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80297 0.69174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6538200 3086700 3451500 5129100 2305900 2823200 0 0 0 0 0 0 1409000 780770 628260 0 0 0 0 0 0 19417 1207 20241 101280;101281 102862;102863;102864 102863 3 LEESTNYNQQLR SLEIKEEKIAALEARLEESTNYNQQLRQEL EARLEESTNYNQQLRQELKTVKKNYEALKQ R L E L R Q 0 1 2 0 0 2 2 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1493.711 Q3V6T2;A0A2R8YGU1;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8Y7D4;H7C2C6;A0A2R8YDS8;H0Y470;H0Y7U8 Q3V6T2 983 994 CCDC88A Girdin yes no 2 0.012467 57.598 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19418 367 20242 101282 102865 102865 1 LEETKLEAVR IFLRGIMESPIAHERLEETKLEAVRDNNLE IAHERLEETKLEAVRDNNLELVQEILRDLA R L E V R D 1 1 0 0 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1186.6558 E5RI47;B4DZ84;D3DX48;A0A0A0MRU0;A0A0D9SFF8;D3DX49;A0A0C4DH75;Q14168;E5RFN8;A0A087X0C7;E5RK50;E5RJK0;E5RK44;E5RI32;E5RIU3;A0A087WVY2 E5RI47 38 47 MPP2 MAGUK p55 subfamily member 2 yes no 3 0.014349 42.336 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4636500 0 4636500 0 0 0 0 0 0 4636500 0 4636500 0 0 0 0 0 0 0 0 0 19419 172 20243 101283 102866 102866 1 LEETLEQLAK KWQKSLQYERDQRIRLEETLEQLAKQHNHL DQRIRLEETLEQLAKQHNHLERAFRGATVL R L E A K Q 1 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1172.6289 P22059 P22059 304 313 OSBP Oxysterol-binding protein 1 yes yes 2 0.042746 30.254 By MS/MS 1 0.79576 0.77269 NaN 1 Median 0.79576 0.77269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3004600 1563600 1441000 3004600 1563600 1441000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19420 2096 20244 101284 102867 102867 1 LEETLPVIR MLGLGDMNADQLASKLEETLPVIRSVSEQF DQLASKLEETLPVIRSVSEQFKDPEQTTFI K L E I R S 0 1 0 0 0 0 2 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 9 0 1068.6179 O43681;A0A087WXS7 O43681 222 230 ASNA1 ATPase ASNA1 yes no 2 0.00098836 86.794 By MS/MS By MS/MS By matching 1 1 1 0.9604 0.84451 15.168 3 Median 0.9604 0.95652 NaN 1 0 Median 0.97647 0.84451 NaN 1 0 Median 0.69448 0.70732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17236000 8680100 8555900 10257000 5169400 5087100 3416300 1758800 1657500 3563100 1751800 1811300 0 0 0 0 0 0 0 0 0 19421 70 20245 101285;101286;101287 102868;102869 102868 2 LEETQALLR AAKDADERIEKVQTRLEETQALLRKKEKEF EKVQTRLEETQALLRKKEKEFEETMDALQA R L E L R K 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1071.5924 E7EX90;Q14203 E7EX90 981 989 DCTN1 Dynactin subunit 1 yes no 2 0.0004831 121.62 By MS/MS By MS/MS 2 1 1.3028 1.1972 5.3888 3 Median 1.27 1.2098 1.485 2 0 Median 1.3246 1.104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41013000 17706000 23307000 26162000 11301000 14862000 14851000 6405300 8445300 0 0 0 0 0 0 0 0 0 0 0 0 19422 906 20246 101288;101289;101290 102870;102871;102872;102873 102870 4 LEEVGVR LLERAEAWRQKLHGRLEEVGVRAQDRLDKI WRQKLHGRLEEVGVRAQDRLDKIRQQLEEV R L E V R A 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 800.43922 CON__Q03247 CON__Q03247 235 241 yes yes 2 0.0014903 114.54 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.045119 0.037018 100.32 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17263 0.17039 40.803 2 2 Median 0.045119 0.035996 120.21 3 3 Median 0.035828 0.037018 NaN 1 1 Median 0.040379 0.033133 NaN 1 1 Median 15276000 14474000 802370 0 0 0 0 0 0 1201600 985440 216180 4689800 4452600 237260 6148700 5933800 214850 3235800 3101800 134080 + 19423 767 20247 101291;101292;101293;101294;101295;101296;101297 102874;102875;102876;102877;102878;102879;102880 102876 7 LEEVLTNK DYAGLKEEFRKEFTKLEEVLTNKKTTFFGG FRKEFTKLEEVLTNKKTTFFGGNSISMIDY K L E N K K 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 944.51786 P78417;Q5TA02 P78417 153 160 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.021269 66.073 By MS/MS 1 0.059542 0.055138 NaN 1 Median 0.059542 0.055138 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24650000 23353000 1297100 24650000 23353000 1297100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19424 2646 20248 101298 102881 102881 1 LEEVLTNKK DYAGLKEEFRKEFTKLEEVLTNKKTTFFGG RKEFTKLEEVLTNKKTTFFGGNSISMIDYL K L E K K T 0 0 1 0 0 0 2 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 9 1 1072.6128 P78417;Q5TA02 P78417 153 161 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.0036881 70.919 By MS/MS By MS/MS By MS/MS 1 1 1 0.83148 0.84685 11.661 3 Median 0.83148 0.84685 NaN 1 0 Median 1.1132 1.0217 NaN 1 0 Median 0.81131 0.82512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4383300 2085100 2298200 2489000 1261400 1227600 699840 296270 403570 1194500 527400 667060 0 0 0 0 0 0 0 0 0 19425 2646 20249 101299;101300;101301 102882;102883;102884 102882 3 LEEVMQELR ATPSGSLARAGEAGKLEEVMQELRALRALV AGEAGKLEEVMQELRALRALVKEQGDRICR K L E L R A 0 1 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1145.5751 Q9BR76 Q9BR76 453 461 CORO1B Coronin-1B yes yes 2 0.00092322 114.89 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19426 3792 20250 101302 102885 102885 1 LEEYLGSMAK ASDTEKIIREGPTGRLEEYLGSMAKIQKAV GPTGRLEEYLGSMAKIQKAVEYFQDNSPDS R L E A K I 1 0 0 0 0 0 2 1 0 0 2 1 1 0 0 1 0 0 1 0 0 0 10 0 1139.5533 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07;B5MCY9;K7ERQ5;C9JME6 A0A0A0MSB8 109 118 EXOC7 Exocyst complex component 7 yes no 2 0.012715 56.916 By MS/MS 1 1.1731 1.2245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1731 1.2245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6000200 2751800 3248300 0 0 0 0 0 0 6000200 2751800 3248300 0 0 0 0 0 0 0 0 0 19427 179 20251 101303 102886 102886 1 LEFDISEDEIFTSLTAAR TTKESKQDLLERLRKLEFDISEDEIFTSLT DISEDEIFTSLTAARSLLERKQVRPMLLVD K L E A R S 2 1 0 2 0 0 3 0 0 2 2 0 0 2 0 2 2 0 0 0 0 0 18 0 2056.0001 K7ER15;Q9H0R4;K7EJQ8;A0A1B0GXB1;K7EQD2;K7EMY7 K7ER15 63 80 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 3 0.074296 5.8437 By MS/MS 1 1.1625 1.0096 NaN 1 Median NaN NaN NaN 0 0 Median 1.1625 1.0096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2236900 915370 1321500 0 0 0 2236900 915370 1321500 0 0 0 0 0 0 0 0 0 0 0 0 19428 1396 20252 101304 102887 102887 1 LEFFGFEDHETGGDEGGSGSSNYK TRFRPSNTKSKKDVKLEFFGFEDHETGGDE ETGGDEGGSGSSNYKIKYFGFDDLSESEDD K L E Y K I 0 0 1 2 0 0 4 6 1 0 1 1 0 3 0 3 1 0 1 0 0 0 24 0 2565.0568 Q7Z5K2 Q7Z5K2 426 449 WAPAL Wings apart-like protein homolog yes yes 3 1.8114E-08 48.641 By MS/MS By matching 1 1 1.0394 1.0002 13.98 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84736 0.90605 NaN 1 0 Median 1.2749 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9029500 4596200 4433400 0 0 0 0 0 0 8835000 4507900 4327100 194560 88333 106230 0 0 0 0 0 0 19429 3249 20253 101305;101306 102888;102889 102889 2 LEGDAALNR DKLVGEIKEEEKNEKLEGDAALNRLFQQIY EEKNEKLEGDAALNRLFQQIYSDGSDEVKR K L E N R L 2 1 1 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 957.48796 Q9Y2Z0 Q9Y2Z0 303 311 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 0.00081745 96.253 By MS/MS 1 1.0641 0.91869 NaN 1 Median NaN NaN NaN 0 0 Median 1.0641 0.91869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3036100 1616200 1419900 0 0 0 3036100 1616200 1419900 0 0 0 0 0 0 0 0 0 0 0 0 19430 4398 20254 101307 102890;102891 102890 2 LEGDLKGPEVDIK KGPKVKGDVDISLPKLEGDLKGPEVDIKGP PKLEGDLKGPEVDIKGPKVDINAPDVDVHG K L E I K G 0 0 0 2 0 0 2 2 0 1 2 2 0 0 1 0 0 0 0 1 0 0 13 1 1411.7559 Q09666 Q09666 3568 3580 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00028387 72.29 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 3 0.94134 0.98753 16.559 9 Median 0.81438 0.9211 19.178 3 0 Plateau 1.0624 1.0155 NaN 1 0 Median 0.96587 1.1017 4.709 2 0 Median 0.97203 0.98753 10.755 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82945000 40791000 42154000 28477000 14422000 14055000 16900000 7745300 9154800 25804000 12914000 12890000 11763000 5709400 6054000 0 0 0 0 0 0 19431 2749 20255 101308;101309;101310;101311;101312;101313;101314;101315;101316 102892;102893;102894;102895;102896;102897;102898;102899;102900;102901;102902;102903;102904;102905 102896 14 LEGDLKGPEVDIKGPK KGPKVKGDVDISLPKLEGDLKGPEVDIKGP EGDLKGPEVDIKGPKVDINAPDVDVHGPDW K L E P K V 0 0 0 2 0 0 2 3 0 1 2 3 0 0 2 0 0 0 0 1 0 0 16 2 1693.9251 Q09666 Q09666 3568 3583 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 2.8406E-05 74.296 By MS/MS By MS/MS 3 2 0.86684 1.0738 14.399 5 Median 0.90903 1.0738 19.847 3 0 Median NaN NaN NaN 0 0 Median 0.83929 1.042 4.5679 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112070000 59184000 52885000 67173000 35480000 31694000 0 0 0 44896000 23705000 21191000 0 0 0 0 0 0 0 0 0 19432 2749 20256 101317;101318;101319;101320;101321 102906;102907;102908;102909;102910;102911;102912;102913;102914;102915 102910 10 LEGDNVNPESQLIQQSEQSESETAGSTK RELDMEPYTVAGVAKLEGDNVNPESQLIQQ QQSEQSESETAGSTKYRLVGVLVHSGQASG K L E T K Y 1 0 2 1 0 4 5 2 0 1 2 1 0 0 1 5 2 0 0 1 0 0 28 0 3004.3745 Q93008 Q93008 1835 1862 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 1.5853E-46 117.83 By MS/MS By matching By matching 1 2 1 0.95563 0.89527 12.767 4 Median 0.76671 0.73937 NaN 1 0 Median 1.0258 0.89527 1.1201 2 0 Median 0.90266 1.0059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22161000 10943000 11218000 16115000 7885900 8228900 1966000 938200 1027800 4079900 2118400 1961400 0 0 0 0 0 0 0 0 0 19433 3573 20257 101322;101323;101324;101325 102916;102917 102917 2 LEGEDQFLEVAEAPEATQATFPVHR LLCLSGLRGVTFLLRLEGEDQFLEVAEAPE AEAPEATQATFPVHRAGNYSCSYRTHAAGT R L E H R A 4 1 0 1 0 2 5 1 1 0 2 0 0 2 2 0 2 0 0 2 0 0 25 0 2783.3402 CON__Q2KJF1 CON__Q2KJF1 155 179 yes yes 3 0.03908 18.298 By MS/MS 1 0.093063 0.094209 NaN 1 Median 0.093063 0.094209 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1825400 1768000 57434 1825400 1768000 57434 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 19434 773 20258 101326 102918 102918 1 LEGELKGPELDVK KGPKIKGDVDVSAPKLEGELKGPELDVKGP PKLEGELKGPELDVKGPKLDADMPEVAVEG K L E V K G 0 0 0 1 0 0 3 2 0 0 3 2 0 0 1 0 0 0 0 1 0 0 13 1 1425.7715 Q09666 Q09666 2337 2349 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 4.3199E-06 114.86 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 1 0.90236 0.93531 66.654 9 Median 0.74282 0.80873 NaN 1 0 Median 0.83609 0.80646 39.731 2 0 Median 0.85291 0.96629 4.6096 2 1 Median 0.93682 0.95176 5.3014 2 1 Median 5.8178 6.1659 NaN 1 0 Median 0.97019 0.86577 NaN 1 0 Median 86513000 44439000 42074000 22941000 12478000 10463000 4463900 2807800 1656100 40756000 20861000 19895000 11279000 5987500 5291700 6673800 2112400 4561400 398910 192390 206520 19435 2749 20259 101327;101328;101329;101330;101331;101332;101333;101334;101335 102919;102920;102921;102922;102923;102924;102925;102926 102921 8 LEGELKGPELDVKGPK KGPKIKGDVDVSAPKLEGELKGPELDVKGP EGELKGPELDVKGPKLDADMPEVAVEGPNG K L E P K L 0 0 0 1 0 0 3 3 0 0 3 3 0 0 2 0 0 0 0 1 0 0 16 2 1707.9407 Q09666 Q09666 2337 2352 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 0.00014408 46.319 By MS/MS By MS/MS 1 2 0.6679 0.82924 28.254 3 Median 0.55585 0.65659 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7873 0.97748 23.259 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27899000 16333000 11566000 8986700 5865500 3121200 0 0 0 18912000 10467000 8444700 0 0 0 0 0 0 0 0 0 19436 2749 20260 101336;101337;101338 102927;102928;102929 102928 2 LEGFHTQISK VQEKVFELMTSLHTKLEGFHTQISKYFSER SLHTKLEGFHTQISKYFSERGDAVTKAAKQ K L E S K Y 0 0 0 0 0 1 1 1 1 1 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1158.6033 Q06323;H0YLU2;H0YKK6 Q06323 167 176 PSME1 Proteasome activator complex subunit 1 yes no 2 0.00042278 93.178 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.1323 1.0718 17.877 6 Median 1.0761 0.98628 NaN 1 0 Median 1.0383 0.87977 18.207 2 0 Median 1.0601 1.1702 NaN 1 0 Median 1.4145 1.284 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3401 1.148 NaN 1 0 Median 37770000 17455000 20316000 14641000 6948600 7692900 7452100 3110500 4341600 10804000 5219400 5584600 666610 277920 388690 0 0 0 4206100 1898200 2308000 19437 2724 20261 101339;101340;101341;101342;101343;101344 102930;102931 102931 2 LEGGEVDLK DLHLKAPKIGFSGPKLEGGEVDLKGPKVEA GFSGPKLEGGEVDLKGPKVEAPSLDVHMDS K L E L K G 0 0 0 1 0 0 2 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 958.49713 Q09666 Q09666 4937 4945 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00088636 92.439 By MS/MS By MS/MS 1 3 1.2021 1.1361 28.45 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.291 1.4025 NaN 1 0 Median 1.1427 1.1316 26.73 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17436000 7643800 9791800 0 0 0 0 0 0 3004900 1246700 1758200 14431000 6397100 8033600 0 0 0 0 0 0 19438 2749 20262 101345;101346;101347;101348 102932;102933;102934;102935;102936;102937 102935 6 LEGGEVDLKGPK DLHLKAPKIGFSGPKLEGGEVDLKGPKVEA GPKLEGGEVDLKGPKVEAPSLDVHMDSPDI K L E P K V 0 0 0 1 0 0 2 3 0 0 2 2 0 0 1 0 0 0 0 1 0 0 12 1 1240.6663 Q09666 Q09666 4937 4948 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0026342 75.294 By MS/MS By MS/MS By MS/MS 3 2 3 0.99774 1.0811 9.8007 7 Median 1.074 1.1669 10.801 2 1 Median NaN NaN NaN 0 0 Median 0.92762 1.0533 10.439 2 0 Median 1.0994 1.1169 8.6359 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28195000 14345000 13850000 9344700 4235800 5108900 0 0 0 11375000 6571600 4803300 7475700 3537800 3937900 0 0 0 0 0 0 19439 2749 20263 101349;101350;101351;101352;101353;101354;101355;101356 102938;102939;102940;102941;102942;102943;102944;102945;102946;102947;102948 102946 11 LEGGSGGDSEVQR SIIFMDEIDSIGSSRLEGGSGGDSEVQRTM SRLEGGSGGDSEVQRTMLELLNQLDGFEAT R L E Q R T 0 1 0 1 0 1 2 4 0 0 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1289.5848 P62195;J3QQM1 P62195 259 271 PSMC5 26S protease regulatory subunit 8 yes no 2 2.0352E-06 118.4 By MS/MS By MS/MS By matching 2 3 1 1.417 1.2272 15.388 6 Median 1.0107 1.0139 4.9223 2 0 Median 1.4399 1.2313 10.315 3 2 Median 1.4314 1.3727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7692200 3141300 4550900 3049400 1430500 1618900 4446300 1621400 2825000 196540 89459 107080 0 0 0 0 0 0 0 0 0 19440 2572 20264 101357;101358;101359;101360;101361;101362 102949;102950;102951;102952;102953 102953 5 LEGLGSSEADQDGLASTVR KSQEHEQRLAALQGRLEGLGSSEADQDGLA GSSEADQDGLASTVRSLGETQLVLYGDVEE R L E V R S 2 1 0 2 0 1 2 3 0 0 3 0 0 0 0 3 1 0 0 1 0 0 19 0 1903.9123 Q07065 Q07065 455 473 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 1.9804E-84 241.51 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.4345 1.3451 23.588 6 Median 1.0889 1.0273 10.763 2 0 Median 1.7625 1.525 16.481 2 0 Median 1.312 1.3331 NaN 1 0 Median 2.0668 1.7287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125610000 57047000 68565000 99030000 46775000 52255000 9626500 3528800 6097700 13890000 5787100 8102500 3066400 955970 2110400 0 0 0 0 0 0 19441 2730 20265 101363;101364;101365;101366;101367;101368 102954;102955;102956;102957;102958;102959;102960;102961;102962;102963 102955 10 LEGLTDEINFLR DVDEAYMNKVELESRLEGLTDEINFLRQLY ESRLEGLTDEINFLRQLYEEEIRELQSQIS R L E L R Q 0 1 1 1 0 0 2 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 214 225 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.2516E-171 276.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 9 6 8 14 1.217 1.1243 20.651 50 Median 1.1275 1.0913 28.758 6 0 Median 1.4844 1.2346 18.891 7 0 Median 1.1409 1.2051 14.322 9 2 Median 1.2102 1.0588 8.4125 6 0 Median 1.3632 1.3831 8.3963 8 2 Median 1.166 0.94964 11.702 14 1 Median 7702900000 3452900000 4250100000 83665000 36793000 46872000 718400000 294450000 423950000 2168700000 952570000 1216200000 1891400000 867850000 1023500000 723450000 298700000 424750000 2117300000 1002500000 1114800000 + 19442 750 20266 101369;101370;101371;101372;101373;101374;101375;101376;101377;101378;101379;101380;101381;101382;101383;101384;101385;101386;101387;101388;101389;101390;101391;101392;101393;101394;101395;101396;101397;101398;101399;101400;101401;101402;101403;101404;101405;101406;101407;101408;101409;101410;101411;101412;101413;101414;101415;101416;101417;101418 102964;102965;102966;102967;102968;102969;102970;102971;102972;102973;102974;102975;102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986;102987;102988;102989;102990;102991;102992;102993;102994;102995;102996;102997;102998;102999;103000;103001;103002;103003;103004;103005;103006;103007;103008;103009;103010;103011;103012;103013;103014;103015;103016;103017;103018;103019;103020;103021;103022;103023;103024;103025;103026;103027;103028;103029;103030;103031;103032;103033;103034;103035;103036;103037;103038;103039;103040;103041 103031 76 LEGMLSQSVSSQYNMAGVR GLSHLTAEGQATLERLEGMLSQSVSSQYNM LSQSVSSQYNMAGVRTEDSIRDYEDGMEVD R L E V R T 1 1 1 0 0 2 1 2 0 0 2 0 2 0 0 4 0 0 1 2 0 0 19 0 2055.9718 E9PMI6;J3KN38;P54105 E9PMI6 118 136 CLNS1A Methylosome subunit pICln yes no 2;3 3.0076E-18 119.69 By MS/MS By matching By matching 4 3 1 1.2144 1.0549 25.041 8 Median 1.2437 1.1639 16.983 4 0 Median 1.2029 1.0395 5.8866 3 0 Median 0.59862 0.57386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39037000 17281000 21756000 36299000 15868000 20430000 1400900 618700 782250 1337200 794260 542910 0 0 0 0 0 0 0 0 0 19443 967 20267;20268 101419;101420;101421;101422;101423;101424;101425;101426 103042;103043;103044;103045;103046 103042 340 5 LEGNTVGVEAAR VIKEIEDFDSLEALRLEGNTVGVEAARVIA ALRLEGNTVGVEAARVIAKALEKKSELKRC R L E A R V 2 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1214.6255 P46060;B0QYT5;B0QYT4 P46060 56 67 RANGAP1 Ran GTPase-activating protein 1 yes no 2 3.5356E-06 164.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 6 1.016 0.84857 20.311 16 Median 0.81058 0.82605 52.795 2 0 Median 1.076 0.93832 14.459 3 0 Median 1.1682 1.1878 7.062 2 0 Median 1.0168 0.85091 1.1385 3 2 Plateau NaN NaN NaN 0 0 Median 0.98627 0.81816 10.205 6 2 Median 98132000 46511000 51622000 5029400 2436500 2593000 25314000 11589000 13725000 44739000 21014000 23725000 14400000 6998900 7401600 0 0 0 8649700 4472400 4177400 19444 2336 20269 101427;101428;101429;101430;101431;101432;101433;101434;101435;101436;101437;101438;101439;101440;101441;101442 103047;103048;103049;103050;103051;103052;103053;103054;103055;103056;103057;103058;103059;103060;103061;103062;103063;103064;103065;103066 103050 20 LEGPDVSLK QLPSLEGDLRGPDVKLEGPDVSLKGPGVDL RGPDVKLEGPDVSLKGPGVDLPSVNLSMPK K L E L K G 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 9 0 956.51786 Q09666 Q09666 5273 5281 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0032184 78.334 By MS/MS 2 0.90367 0.85524 10.101 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90367 0.85524 10.101 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12082000 5964800 6116700 0 0 0 0 0 0 0 0 0 12082000 5964800 6116700 0 0 0 0 0 0 19445 2749 20270 101443;101444 103067;103068 103067 2 LEGQAQAEAK NFRLYQLLNLHYPPKLEGQAQAEAKAGEGT HYPPKLEGQAQAEAKAGEGTYALDSESCME K L E A K A 3 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1043.5247 B5MCF9;O00541;B3KXD6;H7BYY8 B5MCF9 233 242 PES1 Pescadillo homolog yes no 2 0.011773 42.19 By matching By MS/MS By matching By matching By MS/MS 1 2 1 2 2 1.0659 0.93761 21.704 8 Median NaN NaN NaN 0 0 Median 1.0312 0.89132 NaN 1 0 Median 1.1533 1.2142 39.567 2 0 Median 1.0812 0.9578 NaN 1 0 Median 0.89986 0.91748 23.777 2 0 Median 1.1702 0.98722 10.591 2 0 Median 5891700 2880100 3011600 0 0 0 1750400 834450 915990 2108100 1054400 1053700 69843 29295 40548 949760 483740 466010 1013600 478230 535360 19446 618 20271 101445;101446;101447;101448;101449;101450;101451;101452 103069;103070;103071 103069 3 LEGQMGEDGNSIK SEFKTQPVREPSAPKLEGQMGEDGNSIKVN PKLEGQMGEDGNSIKVNLIKQDDGGSPIRH K L E I K V 0 0 1 1 0 1 2 3 0 1 1 1 1 0 0 1 0 0 0 0 0 0 13 0 1376.6242 A0A0D9SF98;A0A087WWJ5;A0A087WTF6;A0A087WX77;A0A087WWD4;A0A087WV75;P13591;A0A087X1V2;A0A087WVU1;H7BYX6;A0A087WTE4;A0A087WZS4 A0A0D9SF98 116 128 NCAM1 Neural cell adhesion molecule 1 yes no 2 0.0025189 47.559 By MS/MS 1 1.1929 1.0459 NaN 1 Median NaN NaN NaN 0 0 Median 1.1929 1.0459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2348000 1068800 1279200 0 0 0 2348000 1068800 1279200 0 0 0 0 0 0 0 0 0 0 0 0 19447 17 20272 101453 103072 103072 1 LEGSDVQLLEYEASAAGLIR LRKESRKLIVQPNTRLEGSDVQLLEYEASA VQLLEYEASAAGLIRSFSERFPEDGPELEE R L E I R S 3 1 0 1 0 1 3 2 0 1 4 0 0 0 0 2 0 0 1 1 0 0 20 0 2133.0954 G3V1D3;G3V180;Q9NY33 G3V1D3 698 717 DPP3 Dipeptidyl peptidase 3 yes no 2;3 2.862E-08 68.513 By MS/MS By MS/MS 3 2 1.0747 1.0021 5.8544 5 Median 1.0569 1.0229 8.2467 3 0 Median 1.1129 0.99995 0.30193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8345300 3800300 4545000 6603700 2996500 3607100 1741700 803790 937890 0 0 0 0 0 0 0 0 0 0 0 0 19448 1102 20273 101454;101455;101456;101457;101458 103073;103074;103075;103076 103076 4 LEGTEDLSDVLVR AFACLLHLANEKNLKLEGTEDLSDVLVRQG LKLEGTEDLSDVLVRQGD____________ K L E V R Q 0 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7409 E9PHA2;Q15003;H7C415 E9PHA2 715 727 NCAPH Condensin complex subunit 2 yes no 2 1.3011E-06 114.83 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.96185 0.84266 10.837 4 Median 1.0733 1.0377 NaN 1 0 Median 0.95126 0.82434 NaN 1 0 Median 0.79102 0.84751 NaN 1 0 Median 0.97256 0.83784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11935000 5937800 5996900 3754000 1687600 2066500 2917100 1490500 1426600 3854300 2080100 1774200 1409300 679630 729670 0 0 0 0 0 0 19449 929 20274 101459;101460;101461;101462 103077;103078;103079;103080 103080 4 LEGTNVQEAQK KACRELELKVPLVVRLEGTNVQEAQKILNN LVVRLEGTNVQEAQKILNNSGLPITSAIDL R L E Q K I 1 0 1 0 0 2 2 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 11 0 1215.6095 Q96I99;H0Y852 Q96I99 393 403 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.011012 38.303 By matching By MS/MS 1 1 1.2854 1.1769 30.625 2 Median 0.96878 0.94771 NaN 1 0 Median 1.7054 1.4614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1895200 777480 1117700 412580 228230 184350 1482600 549250 933320 0 0 0 0 0 0 0 0 0 0 0 0 19450 3678 20275 101463;101464 103081 103081 1 LEGVDEATR PDGRRAAGVRLAVTRLEGVDEATRAVPTGD RLAVTRLEGVDEATRAVPTGDMEDLPCGLV R L E T R A 1 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 988.48254 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 333 341 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.00047525 122.52 By MS/MS By MS/MS 1 2 1.5855 1.397 27.883 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99835 1.0021 NaN 1 0 Median 1.786 1.5608 15.675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9157000 3767600 5389400 0 0 0 0 0 0 4006200 1996000 2010200 5150800 1771600 3379200 0 0 0 0 0 0 19451 2102 20276 101465;101466;101467 103082;103083;103084;103085 103083 4 LEGVEGVAHIIDPK GKSMAWRVLLKALERLEGVEGVAHIIDPKA RLEGVEGVAHIIDPKAISKDHLYGTLDPNT R L E P K A 1 0 0 1 0 0 2 2 1 2 1 1 0 0 1 0 0 0 0 2 0 0 14 0 1475.7984 Q14204;A0A2R8YFZ7 Q14204 2244 2257 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.0017089 60.598 By MS/MS 2 0.76505 0.81785 1.648 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76505 0.81785 1.648 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29923000 16987000 12936000 0 0 0 0 0 0 29923000 16987000 12936000 0 0 0 0 0 0 0 0 0 19452 2865 20277 101468;101469 103086;103087;103088 103088 3 LEGVLAEVAQHYQDTLIR DAQKTLQALQIPAAKLEGVLAEVAQHYQDT VLAEVAQHYQDTLIRAKREKAQEIQDESAV K L E I R A 2 1 0 1 0 2 2 1 1 1 3 0 0 0 0 0 1 0 1 2 0 0 18 0 2054.0797 P46940;A0A0J9YXZ5 P46940 568 585 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 1.7227E-14 123.4 By MS/MS By MS/MS 5 1 1.1546 1.0941 10.667 6 Median 1.159 1.1009 8.7819 5 0 Median 1.1074 0.93736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99878000 45445000 54433000 55653000 25242000 30410000 44225000 20202000 24023000 0 0 0 0 0 0 0 0 0 0 0 0 19453 2350 20278 101470;101471;101472;101473;101474;101475 103089;103090;103091;103092;103093;103094;103095;103096;103097;103098;103099;103100;103101 103092 13 LEGWLSLPVR GPGDAEADDGFPESRLEGWLSLPVRNNTKK FPESRLEGWLSLPVRNNTKKFGWVKKYVIV R L E V R N 0 1 0 0 0 0 1 1 0 0 3 0 0 0 1 1 0 1 0 1 0 0 10 0 1168.6604 O75116;E9PF63;Q14DU5 O75116 1153 1162 ROCK2 Rho-associated protein kinase 2 yes no 2 0.012347 41.448 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1098 1.082 9.3936 4 Median 1.1626 1.1342 NaN 1 0 Median 1.2818 1.1274 NaN 1 0 Median 0.95505 1.0385 NaN 1 0 Median 1.0594 0.92748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5569500 2742400 2827100 3474200 1698800 1775500 248590 88132 160460 1590900 839950 750980 255760 115530 140230 0 0 0 0 0 0 19454 1644 20279 101476;101477;101478;101479 103102;103103 103102 2 LEHDKQIWESK QMSIHMEELKINISRLEHDKQIWESKAQTE NISRLEHDKQIWESKAQTEVQLQQKVCDTL R L E S K A 0 0 0 1 0 1 2 0 1 1 1 2 0 0 0 1 0 1 0 0 0 0 11 1 1411.7096 Q14789 Q14789 2257 2267 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.012005 28.806 By MS/MS By matching 1 1 1.2662 1.284 21.651 2 Median 1.3832 1.4964 NaN 1 0 Median 1.159 1.1017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4290000 1575100 2714900 2269400 741200 1528200 2020600 833890 1186700 0 0 0 0 0 0 0 0 0 0 0 0 19455 2900 20280 101480;101481 103104;103105 103105 2 LEHDVNIQFPDKDDGNQPQDQITITGYEK PKIIGRKGAVITQIRLEHDVNIQFPDKDDG GNQPQDQITITGYEKNTEAARDAILRIVGE R L E E K N 0 0 2 5 0 4 2 2 1 3 1 2 0 1 2 0 2 0 1 1 0 0 29 1 3356.5797 Q00341;A0A024R4E5 Q00341 1080 1108 HDLBP Vigilin yes no 4 2.2227E-15 62.284 By MS/MS By matching 1 1 0.79737 0.75999 4.4148 2 Median 0.76734 0.73663 NaN 1 0 Median 0.82857 0.78409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14489000 8262200 6227100 13971000 8024700 5946300 518250 237440 280810 0 0 0 0 0 0 0 0 0 0 0 0 19456 4 20281 101482;101483 103106 103106 1 LEHENPSDPQTPLVFK FPCLRELDFWQEGWRLEHENPSDPQTPLVF EHENPSDPQTPLVFKGVVFNEMKGAFTDNE R L E F K G 0 0 1 1 0 1 2 0 1 0 2 1 0 1 3 1 1 0 0 1 0 0 16 0 1849.921 Q5JRX3 Q5JRX3 184 199 PITRM1 Presequence protease, mitochondrial yes yes 2;3 2.4226E-05 73.722 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.79405 0.7176 35.365 5 Median 0.42969 0.41688 18.288 2 0 Median 0.82263 0.7176 NaN 1 0 Median 0.79405 0.86124 NaN 1 0 Median 0.84753 0.73096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30628000 19332000 11296000 18833000 12383000 6450100 2792800 1592800 1200100 4579200 2775300 1803900 4422700 2580700 1842000 0 0 0 0 0 0 19457 3050 20282 101484;101485;101486;101487;101488 103107;103108;103109;103110 103110 4 LEHEYIHNFK FPGCVHLRKVKFQAKLEHEYIHNFKVLQAA KFQAKLEHEYIHNFKVLQAAFKKMGVDKII K L E F K V 0 0 1 0 0 0 2 0 2 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1328.6513 Q9UPY8;C9JB30;K7ENB3;K7EL66;K7ERD8;Q15555;M0QX52 Q9UPY8 67 76 MAPRE3;MAPRE2 Microtubule-associated protein RP/EB family member 3;Microtubule-associated protein RP/EB family member 2 no no 3 0.00054631 61.765 By matching By matching By MS/MS By MS/MS 2 1 2 3 1.2442 1.124 11.856 8 Median 1.3365 1.3023 3.8179 2 0 Median 1.2689 1.0652 NaN 1 0 Median 1.1095 1.141 0.59441 2 0 Median 1.2199 1.0255 9.7305 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25574000 11032000 14542000 4118300 1698900 2419400 3649800 1439800 2210000 8380100 3629400 4750700 9425600 4263900 5161600 0 0 0 0 0 0 19458 686;1373 20283 101489;101490;101491;101492;101493;101494;101495;101496 103111;103112;103113;103114;103115;103116 103114 6 LEHEYIQNFK FPGSIALKKVKFQAKLEHEYIQNFKILQAG KFQAKLEHEYIQNFKILQAGFKRMGVDKII K L E F K I 0 0 1 0 0 1 2 0 1 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1319.651 Q15691 Q15691 67 76 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2;3 9.1295E-16 189.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 5 4 2 1.1299 1.0157 14.064 21 Median 1.0035 0.93607 17.07 5 0 Median 1.2123 1.0157 15.01 5 1 Median 1.1231 1.0528 12.384 5 1 Median 1.1376 0.94596 4.4868 4 1 Median NaN NaN NaN 0 0 Median 1.3076 1.0851 26.633 2 0 Median 527380000 233150000 294230000 149380000 67311000 82068000 60856000 26819000 34037000 169170000 73452000 95717000 145560000 64404000 81152000 0 0 0 2424600 1166300 1258300 19459 2963 20284 101497;101498;101499;101500;101501;101502;101503;101504;101505;101506;101507;101508;101509;101510;101511;101512;101513;101514;101515;101516;101517 103117;103118;103119;103120;103121;103122;103123;103124;103125;103126;103127;103128;103129;103130;103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143 103125 27 LEHTAQTYSELQGER VATWVDETLSSVASKLEHTAQTYSELQGER LEHTAQTYSELQGERIVSLHCCALYTCAQL K L E E R I 1 1 0 0 0 2 3 1 1 0 2 0 0 0 0 1 2 0 1 0 0 0 15 0 1760.8329 O95071;E7EMW7 O95071 458 472 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 6.7958E-10 101.42 By MS/MS By MS/MS By matching 2 2 1 1.1512 1.0861 9.5367 5 Median 1.0636 1.0533 9.4841 2 0 Median 1.2512 1.0331 16.033 2 0 Median NaN NaN NaN 0 0 Median 1.2483 1.0861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23609000 10152000 13457000 8180100 3726100 4454000 14469000 5961200 8507700 0 0 0 959920 464660 495270 0 0 0 0 0 0 19460 1744 20285 101518;101519;101520;101521;101522 103144;103145;103146;103147 103146 4 LEHVVEEEKVDISEDGMK RFRFGPLTPELMVPRLEHVVEEEKVDISED VVEEEKVDISEDGMKALVTLSSGDMRRALN R L E M K A 0 0 0 2 0 0 5 1 1 1 1 2 1 0 0 1 0 0 0 3 0 0 18 1 2084.9936 P40937 P40937 186 203 RFC5 Replication factor C subunit 5 yes yes 3;4 1.6286E-06 72.184 By MS/MS By MS/MS By matching 1 3 2 1.0436 1.0352 7.146 6 Median 0.96604 0.8996 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0461 1.0919 5.2088 3 0 Plateau 1.1626 1.0352 0.68533 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37562000 19005000 18558000 7781800 4378100 3403700 0 0 0 27094000 13343000 13751000 2687000 1283800 1403200 0 0 0 0 0 0 19461 2293 20286 101523;101524;101525;101526;101527;101528 103148;103149;103150;103151 103151 4 LEIEHSVPK AIETFSGKVELQGKRLEIEHSVPKKQRSRK ELQGKRLEIEHSVPKKQRSRKIQIRNIPPQ R L E P K K 0 0 0 0 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 1050.571 Q9NZI8 Q9NZI8 68 76 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.012973 60.436 By MS/MS 1 1.3212 1.1307 NaN 1 Median NaN NaN NaN 0 0 Median 1.3212 1.1307 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3785600 1612800 2172800 0 0 0 3785600 1612800 2172800 0 0 0 0 0 0 0 0 0 0 0 0 19462 4188 20287 101529 103152 103152 1 LEIEPEWAYGK WDEALLTMSKGEKARLEIEPEWAYGKKGQP EKARLEIEPEWAYGKKGQPDAKIPPNAKLT R L E G K K 1 0 0 0 0 0 3 1 0 1 1 1 0 0 1 0 0 1 1 0 0 0 11 0 1333.6554 Q00688 Q00688 190 200 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.00015157 89.247 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 0.94632 0.85286 28.287 4 Median NaN NaN NaN 0 0 Median 0.77629 0.65771 NaN 1 0 Median 0.89556 0.85286 33.588 2 0 Median 1.3208 1.0891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21555000 10883000 10672000 0 0 0 325460 158910 166550 20671000 10497000 10174000 558740 227500 331230 0 0 0 0 0 0 19463 2677 20288 101530;101531;101532;101533;101534 103153;103154;103155;103156;103157 103156 5 LEIEPEWAYGKK WDEALLTMSKGEKARLEIEPEWAYGKKGQP KARLEIEPEWAYGKKGQPDAKIPPNAKLTF R L E K K G 1 0 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 1 1 0 0 0 12 1 1461.7504 Q00688 Q00688 190 201 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3 0.0016463 38.634 By matching By MS/MS By MS/MS By matching 2 1 1 1 1.0414 0.93579 52.757 5 Median 0.42332 0.42205 46.574 2 0 Median 1.1133 1.0197 NaN 1 0 Median 1.0446 1.0432 NaN 1 0 Median 1.0414 0.93579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13508000 7680200 5827600 7384000 4666700 2717300 1672700 682800 989910 4080700 2171800 1908900 370370 158900 211470 0 0 0 0 0 0 19464 2677 20289 101535;101536;101537;101538;101539 103158;103159 103159 1 LEIGVQSVYEDVAR MKRHLSDMLTYGCTRLEIGVQSVYEDVARD RLEIGVQSVYEDVARDTNRGHTVKAVCESF R L E A R D 1 1 0 1 0 1 2 1 0 1 1 0 0 0 0 1 0 0 1 3 0 0 14 0 1576.8097 Q9H9T3;B4DKA4 Q9H9T3 243 256 ELP3 Elongator complex protein 3 yes no 2 0.00035795 73.067 By MS/MS 1 0.8957 0.9003 NaN 1 Median 0.8957 0.9003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2348700 1225100 1123700 2348700 1225100 1123700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19465 4002 20290 101540 103160 103160 1 LEILQIHTK FDREVDIGIPDATGRLEILQIHTKNMKLAD PDATGRLEILQIHTKNMKLADDVDLEQVAN R L E T K N 0 0 0 0 0 1 1 0 1 2 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1093.6495 P55072 P55072 378 386 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.00047794 122.13 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 2 1 1.2285 1.0801 18.879 9 Median 1.079 1.0063 16.518 2 0 Median 1.2334 1.0801 18.582 3 0 Plateau 1.3371 1.476 NaN 1 0 Median 1.3083 1.123 10.467 2 0 Median NaN NaN NaN 0 0 Median 1.4187 1.2201 NaN 1 0 Median 81640000 37056000 44583000 32548000 15518000 17030000 41826000 18494000 23332000 4879200 1984500 2894700 2224400 982850 1241500 0 0 0 162590 77889 84702 19466 2494 20291 101541;101542;101543;101544;101545;101546;101547;101548;101549 103161;103162;103163;103164;103165;103166;103167;103168 103161 8 LEILQQQLQVANEAR ALKQLEALEKEKAAKLEILQQQLQVANEAR LEILQQQLQVANEARDSAQTSVTQAQREKA K L E A R D 2 1 1 0 0 4 2 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 15 0 1751.953 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 617 631 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 6.3067E-59 237.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 4 2 0.94592 0.8911 19.763 17 Median 0.65871 0.62252 NaN 1 1 Median 1.0621 0.91882 4.3317 2 0 Median 0.76726 0.83971 21.062 4 0 Median 0.98326 0.85908 30.776 4 0 Median 0.93285 0.95319 12.343 4 0 Median 1.0337 0.85435 4.0558 2 0 Median 249810000 123390000 126420000 6184200 3435500 2748600 10108000 4644100 5463500 149070000 73277000 75790000 6012600 2719800 3292800 75919000 38139000 37781000 2521800 1175800 1346100 19467 2905;77 20292 101550;101551;101552;101553;101554;101555;101556;101557;101558;101559;101560;101561;101562;101563;101564;101565;101566 103169;103170;103171;103172;103173;103174;103175;103176;103177;103178;103179;103180;103181;103182;103183;103184;103185;103186 103178 18 LEILTNLANEANISTLLR FYVRSTDPTMIKTLKLEILTNLANEANIST LTNLANEANISTLLREFQTYVKSQDKQFAA K L E L R E 2 1 3 0 0 0 2 0 0 2 5 0 0 0 0 1 2 0 0 0 0 0 18 0 1997.1157 O00203 O00203 390 407 AP3B1 AP-3 complex subunit beta-1 yes yes 2 9.2336E-08 90.926 By MS/MS 2 0.99913 0.89687 10.085 2 Median NaN NaN NaN 0 0 Median 0.99913 0.89687 10.085 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1196500 582270 614200 0 0 0 1196500 582270 614200 0 0 0 0 0 0 0 0 0 0 0 0 19468 1447 20293 101567;101568 103187;103188 103187 2 LEKEIETYHNLLEGGQEDFESSGAGK CQNQEYSLLLSIKMRLEKEIETYHNLLEGG LEGGQEDFESSGAGKIGLGGRGGSGGSYGR R L E G K I 1 0 1 1 0 1 6 4 1 1 3 2 0 1 0 2 1 0 1 0 0 0 26 1 2879.3461 P35527;CON__P35527;K7EQQ3 P35527 447 472 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 1.7223E-10 61.801 By MS/MS By MS/MS 1 1 0.069534 0.077825 11.333 2 Median 0.077386 0.084318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.062479 0.071832 NaN 1 1 Median NaN NaN NaN 0 0 Median 16127000 15746000 381740 9891300 9637200 254100 0 0 0 0 0 0 0 0 0 6236000 6108300 127630 0 0 0 + 19469 2242 20294 101569;101570 103189;103190 103190 2 LEKHELIEFR IDAYDNFDNISLAQRLEKHELIEFRRIAAY SLAQRLEKHELIEFRRIAAYLFKGNNRWKQ R L E F R R 0 1 0 0 0 0 3 0 1 1 2 1 0 1 0 0 0 0 0 0 0 0 10 1 1312.7139 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1503 1512 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 0.00013527 121.9 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 3 1 1 1.109 1.1663 24.03 14 Median 1.1604 1.1563 13.164 5 1 Median 1.2236 1.1523 25.994 4 0 Median 1.0383 1.1764 33.03 3 1 Median 1.271 1.227 NaN 1 1 Median 0.65155 0.74952 NaN 1 0 Median NaN NaN NaN 0 0 Median 164790000 78058000 86736000 94437000 42096000 52340000 34497000 18870000 15627000 27446000 13421000 14025000 6659400 2708000 3951500 1755400 962730 792670 0 0 0 19470 44 20295 101571;101572;101573;101574;101575;101576;101577;101578;101579;101580;101581;101582;101583;101584 103191;103192;103193;103194;103195;103196;103197;103198;103199;103200;103201;103202;103203 103192 12 LEKHELIEFRR IDAYDNFDNISLAQRLEKHELIEFRRIAAY LAQRLEKHELIEFRRIAAYLFKGNNRWKQS R L E R R I 0 2 0 0 0 0 3 0 1 1 2 1 0 1 0 0 0 0 0 0 0 0 11 2 1468.815 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1503 1513 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 6.9162E-05 99.215 By MS/MS 2 1.3469 1.3363 0.57048 2 Median 1.3469 1.3363 0.57048 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19120000 8405900 10714000 19120000 8405900 10714000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19471 44 20296 101585;101586 103204;103205;103206 103206 3 LEKPAKYDDIK RVPTANVSVVDLTCRLEKPAKYDDIKKVVK LTCRLEKPAKYDDIKKVVKQASEGPLKGIL R L E I K K 1 0 0 2 0 0 1 0 0 1 1 3 0 0 1 0 0 0 1 0 0 0 11 2 1318.7133 P04406;E7EUT5 P04406 249 259 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3 0.027137 23.749 By MS/MS By MS/MS By matching 2 2 1 1.0642 1.0984 13.647 5 Median 1.1013 1.1398 15.564 2 0 Median 1.1055 1.0965 22.03 2 0 Median 1.0642 1.0984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7748800 3382900 4365900 3574800 1688400 1886400 3426400 1372000 2054400 747640 322520 425120 0 0 0 0 0 0 0 0 0 19472 1850 20297 101587;101588;101589;101590;101591 103207;103208 103207 2 LEKPLPENEEK KEDEKELVKLPVIVKLEKPLPENEEKKIIK VIVKLEKPLPENEEKKIIKEESDSFKENVK K L E E K K 0 0 1 0 0 0 4 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 11 1 1324.6874 Q96T23;H0YER1;H0YCN2 Q96T23 295 305 RSF1 Remodeling and spacing factor 1 yes no 2;3 0.0047258 39.305 By MS/MS By matching 2 1 0.64519 0.72073 28.37 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64519 0.68494 21.507 2 0 Median 0.51063 0.45237 NaN 1 0 Median 5185600 2760000 2425600 0 0 0 0 0 0 0 0 0 0 0 0 4972200 2626800 2345400 213400 133240 80159 19473 3740 20298 101592;101593;101594 103209;103210 103209 2 LELAQYR AAQTRAMKQVAGTMKLELAQYREVAAFAQF KQVAGTMKLELAQYREVAAFAQFGSDLDAA K L E Y R E 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 891.48142 P25705 P25705 435 441 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 3.255E-07 168.62 By MS/MS By MS/MS By matching By MS/MS 2 4 2 2 1.1098 1.08 20.209 10 Median 0.98321 0.91624 14.864 2 0 Median 1.277 1.0863 18.928 4 1 Median 1.084 1.1566 1.3043 2 0 Median 1.386 1.179 38.963 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 213000000 94482000 118520000 90588000 43831000 46756000 112950000 46604000 66347000 7297100 3196300 4100800 2160800 850130 1310700 0 0 0 0 0 0 19474 2135 20299 101595;101596;101597;101598;101599;101600;101601;101602;101603;101604 103211;103212;103213;103214;103215;103216 103212 6 LELEAAQK MELITILEKTVSPDRLELEAAQKFLERAAV KTVSPDRLELEAAQKFLERAAVENLPTFLV R L E Q K F 2 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 Q14974;J3QR48 Q14974 16 23 KPNB1 Importin subunit beta-1 yes no 2 0.0078694 65.252 By MS/MS By MS/MS 1 1 1.2955 1.1346 26.978 2 Median NaN NaN NaN 0 0 Median 1.5565 1.3731 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0783 0.93759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3637900 1427000 2211000 0 0 0 2510000 928420 1581600 0 0 0 1127900 498570 629340 0 0 0 0 0 0 19475 2904 20300 101605;101606 103217;103218 103217 2 LELEAYR ISTQYILDCVERNERLELEAYRLGPASAAD DCVERNERLELEAYRLGPASAADTGSEAKP R L E Y R L 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 892.46543 Q9NYB0;A0A590UJT3 Q9NYB0 94 100 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 2 0.001798 111.28 By MS/MS 1 0.70974 0.7325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70974 0.7325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815300 2618000 2197200 0 0 0 0 0 0 4815300 2618000 2197200 0 0 0 0 0 0 0 0 0 19476 4174 20301 101607 103219 103219 1 LELEQTYQAK EELRSQHDEQVRLYKLELEQTYQAKLDSAK VRLYKLELEQTYQAKLDSAKLSSDQNDKAA K L E A K L 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1221.6241 Q03252 Q03252 276 285 LMNB2 Lamin-B2 yes yes 2 4.4862E-05 138.1 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1.0619 1.051 56.298 9 Median 0.47523 0.50187 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0619 1.051 NaN 1 0 Median 1.7582 1.5345 98.914 3 0 Plateau 0.96704 0.94391 8.3665 2 1 Median 1.5036 1.232 8.4893 2 0 Median 118450000 55763000 62690000 17266000 11662000 5604200 0 0 0 37340000 17678000 19662000 12774000 4365700 8408100 32347000 14921000 17426000 18727000 7136500 11590000 19477 2709 20302 101608;101609;101610;101611;101612;101613;101614;101615;101616 103220;103221;103222;103223;103224;103225;103226;103227;103228 103225 8 LELFLPEEYPMAAPK IAGPQDSPFEGGTFKLELFLPEEYPMAAPK LELFLPEEYPMAAPKVRFMTKIYHPNVDKL K L E P K V 2 0 0 0 0 0 3 0 0 0 3 1 1 1 3 0 0 0 1 0 0 0 15 0 1746.8902 P61088;F8VSD4;F8VV71;F8VZ29 P61088 54 68 UBE2N Ubiquitin-conjugating enzyme E2 N yes no 2 0.00061052 50.292 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 0.73491 0.63138 10.908 7 Median 0.6292 0.59401 4.0198 2 0 Median 0.74687 0.64181 2.1481 2 0 Median 0.76068 0.72439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70309 0.56688 15.239 2 0 Median 51234000 29452000 21782000 23474000 13902000 9571800 4654400 2539900 2114500 22334000 12540000 9793500 0 0 0 0 0 0 771920 469500 302430 19478 2544 20303;20304 101617;101618;101619;101620;101621;101622;101623 103229;103230;103231;103232;103233;103234 103230 1219 6 LELFTSR TALQGLYYNKELNSKLELFTSRFKDRIVSM YNKELNSKLELFTSRFKDRIVSMTLDKEYD K L E S R F 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 7 0 864.47052 Q8N3U4;B1AMT4;D6W5U7;Q9UJ98 Q8N3U4 364 370 STAG2;STAG3 Cohesin subunit SA-2;Cohesin subunit SA-3 yes no 2 4.0328E-08 134.44 By MS/MS By MS/MS 1 1 1.3968 1.3522 5.0436 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2742 1.4013 NaN 1 1 Median 1.5313 1.3048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9554900 3912100 5642800 0 0 0 0 0 0 8132200 3390800 4741400 1422700 521330 901370 0 0 0 0 0 0 19479 3369 20305 101624;101625 103235;103236 103235 2 LELGIGPGAATR GLRGCIRLLDVNNQRLELGIGPGAATRGSG NQRLELGIGPGAATRGSGVGECGDHPCLPN R L E T R G 2 1 0 0 0 0 1 3 0 1 2 0 0 0 1 0 1 0 0 0 0 0 12 0 1153.6455 A0A087X208;A0A494C0G5;A0A494C1I6;O00468 A0A087X208 1392 1403 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment yes no 2 0.0041889 44.203 By MS/MS 1 1.0691 0.93311 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0691 0.93311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33244000 15421000 17823000 0 0 0 0 0 0 0 0 0 33244000 15421000 17823000 0 0 0 0 0 0 19480 126 20306 101626 103237 103237 1 LELLAAYEEVIR ______________________________ GHRLELLAAYEEVIREESAADWALYTYEDG R L E I R E 2 1 0 0 0 0 3 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1417.7817 Q16643;D6R9W4;D6RFI1 Q16643 11 22 DBN1 Drebrin yes no 2 3.6978E-06 107.24 By MS/MS 2 1.5465 1.3495 40.631 2 Median NaN NaN NaN 0 0 Median 1.5465 1.3495 40.631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12010000 5619100 6390700 0 0 0 12010000 5619100 6390700 0 0 0 0 0 0 0 0 0 0 0 0 19481 2991 20307 101627;101628 103238;103239;103240 103238 3 LELLHPIIPEQSTFK SALVKLPSGEDYNLKLELLHPIIPEQSTFK LELLHPIIPEQSTFKVLSTKIEIKLKKPEA K L E F K V 0 0 0 0 0 1 2 0 1 2 3 1 0 1 2 1 1 0 0 0 0 0 15 0 1763.9822 Q9Y2Z0 Q9Y2Z0 222 236 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 3 0.026397 18.138 By MS/MS By matching 1 1 0.7852 0.70472 5.2629 2 Median 0.78301 0.73144 NaN 1 0 Median 0.78739 0.67897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8632900 4646900 3986000 6014700 3210100 2804600 2618100 1436800 1181400 0 0 0 0 0 0 0 0 0 0 0 0 19482 4398 20308 101629;101630 103241;103242 103242 2 LELLLQK EAERNKMIGKRANERLELLLQKRKELQENQ IGKRANERLELLLQKRKELQENQDEIENMM R L E Q K R 0 0 0 0 0 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 855.54295 Q8N3U4;B1AMT4 Q8N3U4 264 270 STAG2 Cohesin subunit SA-2 no no 2 0.0046223 99.919 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.2255 1.114 19.293 6 Median NaN NaN NaN 0 0 Median 1.9127 1.6695 NaN 1 0 Median 0.94532 1.0116 NaN 1 0 Median 1.2554 1.0652 NaN 1 0 Median 1.0631 1.1082 15.448 2 0 Median 1.3508 1.165 NaN 1 0 Median 19784000 9479400 10305000 0 0 0 2746100 1047400 1698700 8350800 4340400 4010500 2016600 934990 1081600 6270100 2999500 3270600 400410 157090 243320 19483 3369 20309 101631;101632;101633;101634;101635;101636 103243;103244;103245;103246 103244 4 LELNSMQEQLIQAQNTLK KKSLEKEKEASHQLKLELNSMQEQLIQAQN NSMQEQLIQAQNTLKQNEKEEQQLQGNINE K L E L K Q 1 0 2 0 0 4 2 0 0 1 4 1 1 0 0 1 1 0 0 0 0 0 18 0 2100.0885 Q15075 Q15075 931 948 EEA1 Early endosome antigen 1 yes yes 2 0.01812 36.847 By MS/MS 1 0.60141 0.569 NaN 1 Median 0.60141 0.569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 970760 658030 312730 970760 658030 312730 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19484 2926 20310 101637 103247 103247 1 LELQALEEK KESSHSLQIQHQTHRLELQALEEKARQELQ QHQTHRLELQALEEKARQELQEERERMQAQ R L E E K A 1 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1071.5812 Q9ULE4 Q9ULE4 702 710 FAM184B Protein FAM184B yes yes 2 0.033769 35.357 By MS/MS 1 1.2928 1.107 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2928 1.107 NaN 1 0 Median 14236000 5777300 8458700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14236000 5777300 8458700 19485 4324 20311 101638 103248 103248 1 LELQGPR LNSCNKREIEGRAIRLELQGPRGSPNARSQ EIEGRAIRLELQGPRGSPNARSQPSKTLFV R L E P R G 0 1 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 811.4552 P19338;H7BY16 P19338 555 561 NCL Nucleolin yes no 2 0.0026423 106.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 2 2 1.0699 0.98301 13.006 13 Median 1.0135 0.97651 14.671 2 1 Median 1.0848 0.92859 14.832 4 1 Median 1.0699 1.1275 NaN 1 0 Median 1.0997 0.95346 26.004 2 0 Median 1.0322 1.042 4.4282 2 1 Median 1.0799 0.90159 2.9909 2 2 Median 118800000 55519000 63277000 15900000 7934100 7965600 65444000 31455000 33988000 3965500 1812000 2153500 3232400 1495400 1737100 19405000 7828500 11576000 10850000 4993700 5855900 19486 2063 20312 101639;101640;101641;101642;101643;101644;101645;101646;101647;101648;101649;101650;101651 103249;103250;103251;103252;103253;103254;103255;103256;103257;103258;103259;103260;103261;103262;103263;103264;103265 103257 17 LELSDNR LTSIANLPKLNKLKKLELSDNRVSGGLEVL PKLNKLKKLELSDNRVSGGLEVLAEKCPNL K L E N R V 0 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 845.4243 P39687;H0YN26 P39687 69 75 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 2 0.025514 54.205 By MS/MS By MS/MS 2 2 0.95493 0.85719 22.203 4 Median 0.84081 0.82733 38.042 2 0 Median 0.95493 0.85719 4.3714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6716200 3082500 3633700 5373100 2534700 2838400 1343100 547770 795300 0 0 0 0 0 0 0 0 0 0 0 0 19487 2282 20313 101652;101653;101654;101655 103266;103267 103266 2 LELSENR LISVSNLPKLPKLKKLELSENRIFGGLDML PKLPKLKKLELSENRIFGGLDMLAEKLPNL K L E N R I 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 859.43995 Q92688 Q92688 69 75 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2 0.03361 81.297 By MS/MS By MS/MS By MS/MS 1 1 1 1.1125 1.0654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1125 1.0654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4516000 2006100 2509900 0 0 0 0 0 0 4516000 2006100 2509900 0 0 0 0 0 0 0 0 0 19488 3549 20314 101656;101657;101658 103268;103269;103270 103270 3 LELSGSASGAAGR SASWSYTAFVTRGGRLELSGSASGAAGRCK GRLELSGSASGAAGRCKDAWASEGLLAVLR R L E G R C 3 1 0 0 0 0 1 3 0 0 2 0 0 0 0 3 0 0 0 0 0 0 13 0 1174.5942 G3V2I3;A6NED2 G3V2I3 60 72 RCCD1 RCC1 domain-containing protein 1 yes no 2 0.0022747 48.44 By MS/MS By MS/MS 1 1 0.90882 0.8452 32.871 2 Median 0.6664 0.66991 NaN 1 0 Median 1.2394 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3343700 1776900 1566800 2267900 1348000 919890 1075800 428910 646930 0 0 0 0 0 0 0 0 0 0 0 0 19489 508 20315 101659;101660 103271;103272 103272 2 LELSVHLQPITR KMGKTIHKYVHLFPKLELSVHLQPITRSTL FPKLELSVHLQPITRSTLKVELTITPDFQW K L E T R S 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 1 1 0 0 1 0 0 12 0 1404.8089 O75643;A0A494C1A5 O75643 1184 1195 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.00016326 70.488 By matching By matching By MS/MS 2 1 1 1.0958 1.008 15.696 4 Median 1.1181 1.1118 3.1224 2 0 Median 1.1178 0.93424 NaN 1 0 Median 0.73517 0.80476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15685000 7718300 7966800 5573000 2561100 3011900 1615400 625170 990200 8496800 4532100 3964700 0 0 0 0 0 0 0 0 0 19490 1688 20316 101661;101662;101663;101664 103273;103274 103273 2 LELSVLYK IQQEIAVQNPLVSERLELSVLYKEYAEDDN NPLVSERLELSVLYKEYAEDDNIYQQKIKD R L E Y K E 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 8 0 963.56408 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 52 59 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2 0.0054254 75.854 By MS/MS By matching By MS/MS 2 1 1 1.1302 1.0501 4.4736 4 Median 1.1302 1.0501 4.7784 2 0 Median 1.2711 1.0876 NaN 1 0 Median 1.0445 0.99837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48452000 22530000 25922000 45180000 21101000 24079000 541870 231420 310440 2730000 1197600 1532300 0 0 0 0 0 0 0 0 0 19491 1322 20317 101665;101666;101667;101668 103275;103276;103277 103275 3 LEMEGITVK PELAKMSQEEVNVFRLEMEGITVKGKGCPK EVNVFRLEMEGITVKGKGCPKPIKSWVQCG R L E V K G 0 0 0 0 0 0 2 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1018.5369 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 355 363 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0046577 60.019 By MS/MS By MS/MS By MS/MS 1 1 1 1.1251 1.0175 7.1796 3 Median NaN NaN NaN 0 0 Median 1.1251 0.95276 NaN 1 0 Median 0.95305 1.0175 NaN 1 0 Median 1.3111 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24583000 12174000 12409000 0 0 0 9815200 5038400 4776800 13571000 6610200 6960400 1196700 525290 671400 0 0 0 0 0 0 19492 3216 20318 101669;101670;101671 103278;103279;103280 103278 3 LEMEMEAAR QQDQVDRNIKEAREKLEMEMEAARHEHQVM KEAREKLEMEMEAARHEHQVMLMRQDLMRR K L E A R H 2 1 0 0 0 0 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 9 0 1078.4787 Q15233;H7C367;C9JYS8 Q15233 296 304 NONO Non-POU domain-containing octamer-binding protein yes no 2 0.00088636 92.439 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.123 1.095 21.36 8 Median NaN NaN NaN 0 0 Median 1.0078 0.86517 42.458 2 0 Median 0.98122 0.97011 16.437 3 0 Median 1.3386 1.1504 2.6235 2 0 Median 1.0572 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median 67051000 31936000 35114000 0 0 0 8554100 4214400 4339600 39100000 18764000 20336000 13529000 5711000 7817800 5868000 3247200 2620800 0 0 0 19493 2935 20319;20320 101672;101673;101674;101675;101676;101677;101678;101679 103281;103282;103283;103284;103285;103286;103287;103288;103289 103289 1610;1611 9 LEMLQQIANR AMLEREKALRPEVERLEMLQQIANRVQRDS PEVERLEMLQQIANRVQRDSVICEDKLILA R L E N R V 1 1 1 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 10 0 1214.6441 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 383 392 DST Dystonin no no 2 6.8568E-05 133.55 By matching By matching By MS/MS 1 1 1 1.061 1.1421 35.688 3 Plateau 0.86533 0.85785 NaN 1 0 Median 0.64329 0.56187 NaN 1 0 Median 1.061 1.1421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6654400 3146000 3508400 1149200 569510 579670 597150 263030 334120 4908100 2313500 2594600 0 0 0 0 0 0 0 0 0 19494 934 20321 101680;101681;101682 103290;103291 103291 2 LEMNLGLQK LWEYLLELLRARRQRLEMNLGLQKIFQEML RARRQRLEMNLGLQKIFQEMLYIMDWMDEM R L E Q K I 0 0 1 0 0 1 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 9 0 1044.5638 Q01082;A0A087WUZ3;F8W6C1 Q01082 524 532 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00042676 129.4 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 1.0768 0.96488 14.014 8 Median 1.1317 1.0952 NaN 1 0 Median 1.3205 1.1745 12.655 2 0 Median 0.84649 0.93655 6.7394 2 0 Median 1.0483 0.94714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0247 0.8781 10.803 2 1 Median 89809000 44291000 45518000 10470000 4567500 5902600 30459000 13691000 16768000 41173000 22218000 18955000 3110600 1500000 1610700 0 0 0 4596600 2314700 2281900 19495 2681 20322;20323 101683;101684;101685;101686;101687;101688;101689;101690;101691 103292;103293;103294;103295;103296;103297;103298 103294 1372 7 LEMYNILK GRAELNPWPEYIYTRLEMYNILKAEHDSIL PEYIYTRLEMYNILKAEHDSILAEKAEKDS R L E L K A 0 0 1 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 1 0 0 0 8 0 1022.5471 P26639;D6RCA5;D6R9F8;D6RDJ6 P26639 58 65 TARS Threonine--tRNA ligase, cytoplasmic yes no 2 0.0069954 68.915 By MS/MS By matching By matching 4 1 3 1.1598 1.0101 22.281 8 Median 1.0963 1.0097 9.2937 4 0 Median 1.1451 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1746 1.0161 36.729 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162340000 74962000 87378000 45385000 20768000 24617000 103870000 48304000 55566000 0 0 0 13085000 5890100 7194800 0 0 0 0 0 0 19496 2147 20324 101692;101693;101694;101695;101696;101697;101698;101699 103299 103299 1 LEMYVLNPVK TIDPVILFQKMGVGKLEMYVLNPVKSSKEM MGVGKLEMYVLNPVKSSKEMQYFMQQWTGT K L E V K S 0 0 1 0 0 0 1 0 0 0 2 1 1 0 1 0 0 0 1 2 0 0 10 0 1204.6526 P46821;D6RA32;D6RA40 P46821 420 429 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.00033566 87.616 By matching By MS/MS By MS/MS 1 1 2 1.1387 1.124 21.518 4 Median 0.75618 0.75086 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1232 1.2012 NaN 1 0 Median 1.1992 1.124 1.1548 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18326000 8996500 9329900 4116900 2282700 1834200 0 0 0 10412000 5028600 5383800 3797000 1685200 2111900 0 0 0 0 0 0 19497 2347 20325 101700;101701;101702;101703 103300;103301;103302;103303 103302 3 LENAGGDLK ______________________________ CNGDSKLENAGGDLKDGHHHYEGAVVILDA K L E L K D 1 0 1 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 915.46616 P49915 P49915 10 18 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.01233 46.462 By MS/MS By matching 3 1 1.0584 0.924 33.529 4 Median NaN NaN NaN 0 0 Median 1.0199 0.87712 40.367 3 0 Median NaN NaN NaN 0 0 Median 1.0983 0.97338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4090800 1886500 2204300 0 0 0 3940500 1811300 2129200 0 0 0 150250 75150 75103 0 0 0 0 0 0 19498 2405 20326 101704;101705;101706;101707 103304 103304 1 LENCNYAVELGK VNKPPYPKLGANMKKLENCNYAVELGKHPA MKKLENCNYAVELGKHPAKFSLVGIGGQDL K L E G K H 1 0 2 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 12 0 1408.6657 P13797;A0A0A0MSQ0;P13796 P13797 460 471 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 0.0038153 45.161 By matching By MS/MS 1 1 1.0545 0.9526 15.254 2 Median 1.0958 1.0611 NaN 1 0 Median 1.0148 0.8552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16729000 8784200 7945200 9696500 5372600 4323900 7033000 3411600 3621400 0 0 0 0 0 0 0 0 0 0 0 0 19499 1995 20327 101708;101709 103305 103305 1 LENDGATALAEAFR GKPLALKVFVAGRNRLENDGATALAEAFRV RLENDGATALAEAFRVIGTLEEVHMPQNGI R L E F R V 4 1 1 1 0 0 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 14 0 1476.7209 P46060 P46060 192 205 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 1.9056E-05 100.55 By MS/MS By MS/MS 2 1 1.1682 1.1593 18.726 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1197 1.1593 22.495 2 1 Median 1.1682 0.9769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12308000 5969900 6337700 0 0 0 0 0 0 11245000 5605400 5639300 1062900 364480 698410 0 0 0 0 0 0 19500 2336 20328 101710;101711;101712 103306;103307 103306 2 LENDIENMLK TETFETGVPFSDLEKLENDIENMLKFVEKH SDLEKLENDIENMLKFVEKHLESSDEDEKM K L E L K F 0 0 2 1 0 0 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 10 0 1217.5962 P46939 P46939 1778 1787 UTRN Utrophin yes yes 2 0.022193 40.045 By MS/MS 1 0.79047 0.82839 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79047 0.82839 NaN 1 0 Median NaN NaN NaN 0 0 Median 29674000 15830000 13844000 0 0 0 0 0 0 0 0 0 0 0 0 29674000 15830000 13844000 0 0 0 19501 2349 20329 101713 103308 103308 1073 1 LENDQIESLR PAGHQIGTVSPLFQKLENDQIESLRQRFGG PLFQKLENDQIESLRQRFGGGQAKTSPKPA K L E L R Q 0 1 1 1 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1215.6095 P56192;H0YIP0;H0YI94;H0YHL6;H0YI27 P56192 805 814 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 2.0222E-07 135.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.85489 0.77987 4.7565 2 Median 0.83811 0.80655 NaN 1 1 Median 0.872 0.75408 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42654000 24049000 18605000 21269000 11002000 10267000 21385000 13047000 8338600 0 0 0 0 0 0 0 0 0 0 0 0 19502 2508 20330 101714;101715;101716;101717;101718 103309;103310;103311;103312;103313 103312 5 LENEIQTYR CQNTEYQQLLDIKIRLENEIQTYRSLLEGE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG R L E Y R S 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 P13645;CON__P13645;CON__P02535-1 P13645 442 450 KRT10 Keratin, type I cytoskeletal 10 no no 2 8.0512E-60 209.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 10 8 9 8 9 0.077652 0.065441 126.45 27 Median 0.043093 0.041943 130.18 5 5 Median 0.019581 0.016459 81.067 6 5 Median 0.65937 0.66299 64.826 4 4 Linear 0.077652 0.06674 142.39 3 3 Median 0.085968 0.086415 102.28 4 4 Median 0.078953 0.063327 102.45 5 5 Median 1129500000 1105200000 24352000 49775000 47748000 2026800 228240000 226280000 1965200 109090000 97661000 11430000 290060000 287970000 2087900 130440000 126360000 4077300 321900000 319140000 2765500 + 19503 756;740 20331 101719;101720;101721;101722;101723;101724;101725;101726;101727;101728;101729;101730;101731;101732;101733;101734;101735;101736;101737;101738;101739;101740;101741;101742;101743;101744;101745;101746;101747;101748;101749;101750;101751;101752;101753;101754;101755;101756;101757;101758;101759;101760;101761;101762;101763;101764;101765;101766;101767;101768;101769 103314;103315;103316;103317;103318;103319;103320;103321;103322;103323;103324;103325;103326;103327;103328;103329;103330;103331;103332;103333;103334;103335;103336;103337;103338;103339;103340;103341;103342;103343;103344;103345;103346;103347;103348;103349;103350;103351;103352;103353;103354;103355;103356;103357;103358;103359;103360;103361;103362;103363;103364;103365;103366;103367;103368 103335 55 LENGEIETIAR GDVMFTGTADGRVVKLENGEIETIARFGSG RVVKLENGEIETIARFGSGPCKTRDDEPVC K L E A R F 1 1 1 0 0 0 3 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1243.6408 Q9HDC9;H0Y512 Q9HDC9 124 134 APMAP Adipocyte plasma membrane-associated protein yes no 2 0.00011205 123.86 By MS/MS By MS/MS By matching 2 1 1 1.3788 1.211 20.768 4 Median NaN NaN NaN 0 0 Median 1.4133 1.211 5.0953 2 0 Median 1.3692 1.3739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91005 0.8521 NaN 1 0 Median 27066000 10516000 16551000 0 0 0 20561000 7727000 12834000 5121200 2111600 3009600 0 0 0 0 0 0 1384600 677310 707330 19504 4039 20332 101770;101771;101772;101773 103369;103370;103371;103372 103369 4 LENGELEHIRPK NFGIGGDGTQHVLWRLENGELEHIRPKIVV LWRLENGELEHIRPKIVVVWVGTNNHGHTA R L E P K I 0 1 1 0 0 0 3 1 1 1 2 1 0 0 1 0 0 0 0 0 0 0 12 1 1433.7627 Q15102;M0R389;M0R1K3;M0QZT2;M0QXS6;M0R323 Q15102 84 95 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 3 0.00018967 72.34 By MS/MS By MS/MS 1 1 0.8849 0.87048 14.151 2 Median 0.75321 0.7876 NaN 1 0 Median 1.0396 0.96209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17364000 9284300 8079500 9286600 5227600 4059000 8077300 4056700 4020600 0 0 0 0 0 0 0 0 0 0 0 0 19505 2928 20333 101774;101775 103373;103374;103375 103374 3 LENIIVTDVDPK SSLSLQSRKQSLFARLENIIVTDVDPKTVH FARLENIIVTDVDPKTVHKKAVSIMGNEVF R L E P K T 0 0 1 2 0 0 1 0 0 2 1 1 0 0 1 0 1 0 0 2 0 0 12 0 1354.7344 Q709C8 Q709C8 1129 1140 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.017367 52.79 By MS/MS 1 0.93703 0.93058 NaN 1 Median 0.93703 0.93058 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4562200 1897800 2664400 4562200 1897800 2664400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19506 3205 20334 101776 103376 103376 1 LENLDSDVVQLR EAQNSHVYWWRYCIRLENLDSDVVQLRERH CIRLENLDSDVVQLRERHWRIFSLSGTLET R L E L R E 0 1 1 2 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 12 0 1399.7307 Q9Y2S7;B4DEM9 Q9Y2S7 269 280 POLDIP2 Polymerase delta-interacting protein 2 yes no 2 4.1172E-06 112.75 By MS/MS By matching By MS/MS 1 1 1 1.1922 1.1417 8.2102 3 Median 1.1922 1.1815 NaN 1 0 Median 1.3247 1.1417 NaN 1 0 Median 1.0213 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12296000 5773800 6522100 5454800 2389800 3064900 1019700 445500 574210 5821400 2938500 2882900 0 0 0 0 0 0 0 0 0 19507 4390 20335 101777;101778;101779 103377;103378;103379 103378 3 LENLGIPEEELLR ECKTVALKRRKASSRLENLGIPEEELLRQQ SRLENLGIPEEELLRQQQELFAKARQQQAE R L E L R Q 0 1 1 0 0 0 4 1 0 1 4 0 0 0 1 0 0 0 0 0 0 0 13 0 1523.8195 Q01658 Q01658 108 120 DR1 Protein Dr1 yes yes 2 5.2825E-07 107.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 2 1.0218 0.89545 7.4902 8 Median 0.95725 0.93221 NaN 1 0 Median 1.1097 0.92846 NaN 1 0 Median 0.83248 0.82158 7.057 2 0 Median 1.1952 0.98586 NaN 1 0 Median 0.80556 0.85246 NaN 1 0 Median 1.1282 0.89953 7.0844 2 0 Median 37076000 18843000 18232000 9385900 4699800 4686000 579740 246920 332820 15560000 7903700 7656200 802980 357260 445720 9165400 4907800 4257600 1581600 727580 854020 19508 2689 20336 101780;101781;101782;101783;101784;101785;101786;101787 103380;103381;103382;103383;103384;103385;103386;103387;103388;103389 103387 10 LENLHGAMYT EHRRDKARKQQQQHRLENLHGAMYT_____ QQQHRLENLHGAMYT_______________ R L E Y T - 1 0 1 0 0 0 1 1 1 0 2 0 1 0 0 0 1 0 1 0 0 0 10 0 1147.5332 Q9P0P0 Q9P0P0 144 153 RNF181 E3 ubiquitin-protein ligase RNF181 yes yes 2 0.023681 50.805 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5917500 0 0 5917500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19509 4207 20337 101788 103390 103390 1 LENQQMMKR FDEEEDHWKLHPITRLENQQMMKRPVSAVG LHPITRLENQQMMKRPVSAVGYKRPLSQHA R L E K R P 0 1 1 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 9 1 1176.5743 O15066 O15066 620 628 KIF3B Kinesin-like protein KIF3B;Kinesin-like protein KIF3B, N-terminally processed yes yes 2 0.0042062 79.116 By MS/MS By MS/MS 1 1 0.15371 0.13654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15371 0.13654 NaN 1 1 Median 1622800 1401800 220960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1622800 1401800 220960 19510 1517 20338 101789;101790 103391;103392 103391 488;489 2 LENSPLGEALR GKLSYVKTCQEKFKKLENSPLGEALRSGQA KFKKLENSPLGEALRSGQARRSSPPGHYYQ K L E L R S 1 1 1 0 0 0 2 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 0 1197.6354 D6RDK6;D6RBN5;Q9NX40;D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9 D6RDK6 51 61 OCIAD1 OCIA domain-containing protein 1 yes no 2 0.03568 29.473 By MS/MS 1 1.2995 1.0909 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2995 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 546270 249110 297160 0 0 0 0 0 0 0 0 0 546270 249110 297160 0 0 0 0 0 0 19511 815 20339 101791 103393 103393 1 LENVSVALEFLER MYRKFHPRPNFRQMKLENVSVALEFLEREH MKLENVSVALEFLEREHIKLVSIDSKAIVD K L E E R E 1 1 1 0 0 0 3 0 0 0 3 0 0 1 0 1 0 0 0 2 0 0 13 0 1517.809 Q14315 Q14315 97 109 FLNC Filamin-C yes yes 2 0.012529 34.887 By MS/MS 2 1.1776 1.001 8.4834 2 Median NaN NaN NaN 0 0 Median 1.1776 1.001 8.4834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2034000 953280 1080700 0 0 0 2034000 953280 1080700 0 0 0 0 0 0 0 0 0 0 0 0 19512 2871 20340 101792;101793 103394 103394 1 LENYPIPEPGPNEVLLR PNNLSLVVHGPGDLRLENYPIPEPGPNEVL NYPIPEPGPNEVLLRMHSVGICGSDVHYWE R L E L R M 0 1 2 0 0 0 3 1 0 1 3 0 0 0 4 0 0 0 1 1 0 0 17 0 1949.0258 Q00796;H0YKB3 Q00796 22 38 SORD Sorbitol dehydrogenase yes no 2 0.00047221 42.556 By MS/MS By matching 1 1 0.65387 0.60055 3.5694 2 Median 0.58923 0.58558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72561 0.6159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4379200 2403200 1976100 4248500 2309000 1939500 0 0 0 0 0 0 130710 94122 36587 0 0 0 0 0 0 19513 2679 20341 101794;101795 103395;103396;103397 103397 3 LEPAFLSGLR VYRDETLSGSELTAKLEPAFLSGLRCAQPL ELTAKLEPAFLSGLRCAQPLIRAKFFEVFD K L E L R C 1 1 0 0 0 0 1 1 0 0 3 0 0 1 1 1 0 0 0 0 0 0 10 0 1101.6182 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2421 2430 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00039551 78.334 By MS/MS By MS/MS By matching 1 2 1 0.85794 0.77599 8.4463 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78847 0.82919 NaN 1 0 Median 0.90216 0.78489 11.17 2 0 Median NaN NaN NaN 0 0 Median 0.88283 0.7262 NaN 1 0 Median 18098000 10029000 8068500 0 0 0 0 0 0 16914000 9419300 7495200 1082200 558900 523260 0 0 0 100890 50836 50057 19514 991 20342 101796;101797;101798;101799 103398;103399;103400;103401 103398 4 LEPEEQNRPNER DSSRSEERKSHKIPKLEPEEQNRPNERVDT IPKLEPEEQNRPNERVDTVSEKPREEPVLK K L E E R V 0 2 2 0 0 1 4 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 12 1 1509.7172 Q9BZ95;E9PKA2 Q9BZ95 219 230 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 3 0.035227 20.84 By MS/MS 1 0.65146 0.72697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65146 0.72697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1656000 863630 792420 0 0 0 0 0 0 1656000 863630 792420 0 0 0 0 0 0 0 0 0 19515 3896 20343 101800 103402 103402 1 LEPGGGAEAQAVR DVRMTSPSRRPIPCKLEPGGGAEAQAVRYM CKLEPGGGAEAQAVRYMPPEEGPYKVDITY K L E V R Y 3 1 0 0 0 1 2 3 0 0 1 0 0 0 1 0 0 0 0 1 0 0 13 0 1253.6364 Q14315 Q14315 1015 1027 FLNC Filamin-C yes yes 2 0.00018752 81.865 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1.0258 0.8924 21.407 7 Median 1.0895 1.0931 2.7285 2 0 Median 1.0231 0.8228 17.567 3 0 Plateau NaN NaN NaN 0 0 Median 1.0258 0.8924 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3567 1.1153 NaN 1 0 Median 27073000 10922000 16150000 5356600 2371900 2984700 20299000 7921100 12378000 0 0 0 841400 415720 425680 0 0 0 575720 213630 362090 19516 2871 20344 101801;101802;101803;101804;101805;101806;101807;101808 103403;103404;103405;103406;103407;103408;103409;103410;103411;103412;103413 103408 11 LEPHKPQQIPIDSTVSFGASTR IDLNSTHGTFLGHIRLEPHKPQQIPIDSTV QIPIDSTVSFGASTRAYTLREKPQTLPSAV R L E T R A 1 1 0 1 0 2 1 1 1 2 1 1 0 1 3 3 2 0 0 1 0 0 22 1 2407.2496 Q12972 Q12972 101 122 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 2;3;4 1.8186E-13 85.062 By matching By matching By MS/MS By MS/MS 1 2 5 4 0.59145 0.67674 24.269 12 Median 0.64017 0.68586 NaN 1 0 Median 0.55772 0.53638 61.157 2 0 Median 0.51385 0.57252 14.605 5 1 Median 0.78477 0.70471 19.875 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 256390000 159430000 96953000 6225800 3763400 2462400 580320 316650 263670 240170000 150490000 89679000 9409900 4861900 4548000 0 0 0 0 0 0 19517 2775 20345 101809;101810;101811;101812;101813;101814;101815;101816;101817;101818;101819;101820 103414;103415;103416;103417;103418;103419;103420;103421;103422;103423;103424;103425;103426 103420 13 LEPKPQPPVAEATPR LENSEPAPVSQLQSRLEPKPQPPVAEATPR LEPKPQPPVAEATPRSQEATEAAPSCVGDM R L E P R S 2 1 0 0 0 1 2 0 0 0 1 1 0 0 5 0 1 0 0 1 0 0 15 1 1628.8886 Q9UHD8;K7EJ51;K7ER14;K7EJL9 Q9UHD8 223 237 SEPT9 Septin-9 yes no 2;3 3.5555E-10 106.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 7 1 2 0.54867 0.5317 22.117 14 Median 0.39622 0.4049 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.45247 0.4813 23.966 4 0 Median 0.67318 0.64008 10.159 7 0 Median NaN NaN NaN 0 0 Median 0.53053 0.47102 8.3227 2 1 Median 221540000 140600000 80940000 2035000 1370600 664420 0 0 0 110290000 74519000 35770000 104250000 61522000 42725000 0 0 0 4966900 3186200 1780700 19518 4276 20346 101821;101822;101823;101824;101825;101826;101827;101828;101829;101830;101831;101832;101833;101834;101835 103427;103428;103429;103430;103431;103432;103433;103434;103435;103436;103437;103438;103439;103440;103441;103442;103443;103444;103445;103446;103447;103448;103449;103450;103451;103452;103453;103454;103455;103456;103457;103458;103459;103460;103461;103462;103463;103464 103443 38 LEPLVNDLTLR DLKPKVYNLKKDFSRLEPLVNDLTLRIGRL DFSRLEPLVNDLTLRIGRLVTDLLQREKEI R L E L R I 0 1 1 1 0 0 1 0 0 0 4 0 0 0 1 0 1 0 0 1 0 0 11 0 1281.7293 Q70UQ0 Q70UQ0 294 304 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 0.0063927 44.318 By MS/MS By matching By MS/MS 1 1 1 1.2944 1.1469 19.836 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0071 1.0919 NaN 1 0 Median 1.2944 1.1469 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8638 1.5736 NaN 1 0 Median 8379600 3594000 4785600 0 0 0 0 0 0 5984400 2788700 3195800 917510 379840 537670 0 0 0 1477700 425540 1052100 19519 3208 20347 101836;101837;101838 103465;103466 103465 2 LEPMIVPDLDLK GFFNIYHPLDPVAYRLEPMIVPDLDLKAVL AYRLEPMIVPDLDLKAVLIPHHKGRKRLHL R L E L K A 0 0 0 2 0 0 1 0 0 1 3 1 1 0 2 0 0 0 0 1 0 0 12 0 1381.7527 Q9Y6Y8 Q9Y6Y8 831 842 SEC23IP SEC23-interacting protein yes yes 2 0.0049172 42.336 By MS/MS By matching 1 1 1.0004 0.93262 18.628 2 Median 1.0739 1.0639 NaN 1 0 Median 0.93205 0.81752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5064200 2508000 2556200 2752800 1291400 1461300 2311500 1216600 1094900 0 0 0 0 0 0 0 0 0 0 0 0 19520 4502 20348 101839;101840 103467 103467 1 LEPNAQAQMYR GIIQTKALQVGCLLRLEPNAQAQMYRLTLR CLLRLEPNAQAQMYRLTLRTSKEPVSRHLC R L E Y R L 2 1 1 0 0 2 1 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 11 0 1319.6292 O95782 O95782 945 955 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.00014351 84.476 By MS/MS By MS/MS 1 1 0.90211 0.87414 6.2617 2 Median NaN NaN NaN 0 0 Median 1.0449 0.91372 NaN 1 0 Median 0.77884 0.83628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5043000 2235000 2808000 0 0 0 1714500 773750 940770 3328500 1461200 1867300 0 0 0 0 0 0 0 0 0 19521 1793 20349 101841;101842 103468;103469;103470 103469 3 LEPNLGEDDEDKDLEPGPSGTSK KRPRDDSDSTLKKMKLEPNLGEDDEDKDLE DEDKDLEPGPSGTSKASAQISGQSDTDITA K L E S K A 0 0 1 4 0 0 4 3 0 0 3 2 0 0 3 2 1 0 0 0 0 0 23 1 2441.1082 Q92797;A0A087WUE9;M0R3C7 Q92797 362 384 SYMPK Symplekin yes no 3 1.8532E-07 39.507 By MS/MS 1 0.54636 0.62894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54636 0.62894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6801300 4209100 2592200 0 0 0 0 0 0 6801300 4209100 2592200 0 0 0 0 0 0 0 0 0 19522 3558 20350 101843 103471 103471 1 LEPNLQAQMYR GIIHTKTTQIGCLLRLEPNLQAQMYRLTLR CLLRLEPNLQAQMYRLTLRTSKEAVSQRLC R L E Y R L 1 1 1 0 0 2 1 0 0 0 2 0 1 0 1 0 0 0 1 0 0 0 11 0 1361.6762 O94973;A0A0G2JS82 O94973 907 917 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.00096812 81.548 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19523 1741 20351 101844 103472 103472 1 LEPQIASASEYAHR LTAAAVSGAQPILSKLEPQIASASEYAHRG KLEPQIASASEYAHRGLDKLEENLPILQQP K L E H R G 3 1 0 0 0 1 2 0 1 1 1 0 0 0 1 2 0 0 1 0 0 0 14 0 1570.774 O60664;K7EL96;K7ER39 O60664 85 98 PLIN3 Perilipin-3 yes no 3 2.3572E-06 125.03 By MS/MS By MS/MS 3 2 1.0614 0.93987 12.611 4 Median 1.0267 0.99861 16.315 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0614 0.91473 11.575 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72376000 36036000 36340000 53479000 27141000 26338000 0 0 0 0 0 0 18898000 8895500 10002000 0 0 0 0 0 0 19524 1624 20352 101845;101846;101847;101848;101849 103473;103474;103475;103476;103477;103478;103479 103474 7 LEPSTSTDQPVTPEPTSQATR SSGKTPETLVPTAPKLEPSTSTDQPVTPEP TDQPVTPEPTSQATRGRTNRSSVKTPETVV K L E T R G 1 1 0 1 0 2 2 0 0 0 1 0 0 0 4 3 5 0 0 1 0 0 21 0 2241.0761 Q14676 Q14676 1414 1434 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 2.787E-23 120.7 By MS/MS By MS/MS By matching 3 5 1 0.66257 0.56741 12.679 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51269 0.55884 9.2085 3 1 Median 0.69109 0.6089 6.7332 5 4 Median NaN NaN NaN 0 0 Median 0.52302 0.43406 NaN 1 0 Median 96832000 61829000 35003000 0 0 0 0 0 0 71118000 46312000 24807000 21617000 12415000 9201800 0 0 0 4096800 3102500 994330 19525 2887 20353 101850;101851;101852;101853;101854;101855;101856;101857;101858 103480;103481;103482;103483;103484;103485;103486;103487;103488;103489;103490;103491;103492 103481 13 LEQAWMNEK GSEEVVLTPAELIERLEQAWMNEKFAPELL AELIERLEQAWMNEKFAPELLESKPEIVEC R L E E K F 1 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 9 0 1147.5332 Q9BRT9;E5RFF9;E5RH56 Q9BRT9 30 38 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed;DNA replication complex GINS protein SLD5 yes no 2 0.0034093 65.305 By MS/MS By matching 1 1 0.81787 0.72806 1.7557 2 Median 0.79237 0.73715 NaN 1 0 Median 0.84419 0.71908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8285700 4402600 3883100 6838300 3678300 3159900 1447400 724230 723160 0 0 0 0 0 0 0 0 0 0 0 0 19526 833 20354 101859;101860 103493 103493 1 LEQDEYALR GHSADRLAAAFAVSRLEQDEYALRSHSLAK AFAVSRLEQDEYALRSHSLAKKAQDEGLLS R L E L R S 1 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1135.551 P55084;F5GZQ3 P55084 239 247 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 2.2216E-07 166.96 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.4981 1.2722 24.623 4 Median 0.97289 0.92341 NaN 1 0 Median 1.4484 1.2155 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5495 1.3314 NaN 1 0 Median 1.6664 1.6748 NaN 1 0 Median NaN NaN NaN 0 0 Median 85284000 33894000 51390000 16648000 7890700 8757300 25369000 9819500 15550000 0 0 0 36446000 13484000 22962000 6820500 2699800 4120700 0 0 0 19527 2496 20355 101861;101862;101863;101864 103494;103495;103496;103497 103494 4 LEQDILEK TILETQKVECSHSAKLEQDILEKESIILKL ECSHSAKLEQDILEKESIILKLERNLKEFQ K L E E K E 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 986.52843 Q96Q89 Q96Q89 1183 1190 KIF20B Kinesin-like protein KIF20B yes yes 2 0.057581 52.937 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19528 3717 20356 101865 103498 103498 1 LEQDLQQMQAK VVMETNKMLREEKERLEQDLQQMQAKVRKL EKERLEQDLQQMQAKVRKLELDILPLQEAN R L E A K V 1 0 0 1 0 4 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1330.6551 P12270 P12270 1286 1296 TPR Nucleoprotein TPR yes yes 2 0.00011247 145.72 By MS/MS By MS/MS By MS/MS 2 2 2 1.0781 1.0791 21.966 6 Median NaN NaN NaN 0 0 Median 1.3501 1.1921 33.304 2 0 Median 0.97409 1.0703 16.205 2 0 Median 1.2824 1.1966 29.671 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25856000 11900000 13957000 0 0 0 10531000 4677500 5853400 10778000 5265400 5512700 4547200 1956600 2590700 0 0 0 0 0 0 19529 1978 20357 101866;101867;101868;101869;101870;101871 103499;103500;103501;103502;103503;103504;103505 103503 7 LEQDQLWIGTK GMYNKSGGKVRLTFKLEQDQLWIGTKERTE LTFKLEQDQLWIGTKERTEKLPMGSIKNVV K L E T K E 0 0 0 1 0 2 1 1 0 1 2 1 0 0 0 0 1 1 0 0 0 0 11 0 1329.6929 O14562;H3BRL3 O14562 235 245 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 2 0.00015337 82.749 By MS/MS By matching By MS/MS 1 1 1 1.0461 0.93224 24.312 3 Median 0.82728 0.77755 NaN 1 0 Median 1.0461 0.93224 NaN 1 0 Median 1.2175 1.2583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15025000 6663300 8361400 2799400 1227300 1572100 472240 179150 293090 11753000 5256800 6496200 0 0 0 0 0 0 0 0 0 19530 1230 20358 101872;101873;101874 103506;103507;103508 103507 3 LEQDQTSAQLQVQK ITETEKKLMSLGDIRLEQDQTSAQLQVQKT RLEQDQTSAQLQVQKTFTMEILRHKDIIDD R L E Q K T 1 0 0 1 0 5 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 14 0 1614.8213 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3773 3786 DST Dystonin yes no 2 5.0607E-06 155.26 By MS/MS By MS/MS By matching 1 1 1 0.99166 0.89672 18.155 3 Median 1.2241 1.2101 NaN 1 0 Median 0.99166 0.87219 NaN 1 0 Median 0.81273 0.89672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11694000 5579500 6114900 2232700 943550 1289100 8448300 4079600 4368700 1013400 556330 457100 0 0 0 0 0 0 0 0 0 19531 934 20359 101875;101876;101877 103509;103510;103511 103511 3 LEQDQTTAQLQVQK VAETKRKLMALGPIRLEQDQTTAQLQVQKA RLEQDQTTAQLQVQKAFSIDIIRHKDSMDE R L E Q K A 1 0 0 1 0 5 1 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 0 1628.837 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5806 5819 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 6.9735E-24 202.31 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1099 0.9885 29.436 5 Median 0.86788 0.86161 NaN 1 0 Median 1.1099 0.9885 NaN 1 0 Median 1.4224 1.5541 NaN 1 0 Median 1.1987 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83004 0.71214 NaN 1 0 Median 27644000 13093000 14551000 3639000 2002300 1636700 19743000 9186700 10556000 2241100 963780 1277300 1056100 508680 547430 0 0 0 965210 431920 533280 19532 1220 20360 101878;101879;101880;101881;101882 103512;103513;103514;103515 103515 4 LEQEIATYR QQNQEYKILLDVKTRLEQEIATYRRLLEGE LDVKTRLEQEIATYRRLLEGEDAHLTQYKK R L E Y R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1121.5717 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;CON__Q8N1A0;Q8N1A0;CON__P08730-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;A8MT21;CON__P35900;CON__Q9D312;P35900;P02533;CON__P02533;CON__Q61782;CON__Q04695;Q04695;F5GWP8;A0A3B3IS58;CON__Q6IFX2;CON__P08727;P08727;CON__P19001 CON__Q04695 377 385 KRT13;KRT222;KRT16;KRT15;KRT20;KRT14;KRT17;KRT19 Keratin, type I cytoskeletal 13;Keratin-like protein KRT222;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 4.9912E-54 235.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 2 3 2 7 0.7161 0.65872 97.237 18 Median 1.0552 1.0501 NaN 1 0 Median 0.60172 0.50828 106.6 4 2 Median 1.0794 1.1186 17.843 2 0 Median 0.34781 0.29591 140.93 2 1 Median 0.79353 0.79566 14.155 2 0 Median 0.44578 0.34932 101.88 7 2 Median 255650000 149840000 105810000 9375300 3695600 5679700 38665000 24584000 14081000 77115000 38237000 38878000 12970000 7052600 5917500 30988000 18325000 12664000 86533000 57944000 28589000 + 19533 768;739;752;754;787;760;736;753 20361 101883;101884;101885;101886;101887;101888;101889;101890;101891;101892;101893;101894;101895;101896;101897;101898;101899;101900;101901;101902 103516;103517;103518;103519;103520;103521;103522;103523;103524;103525;103526;103527;103528;103529;103530;103531;103532;103533;103534;103535;103536;103537;103538;103539;103540;103541;103542;103543;103544 103518 29 LEQEIATYRR QQNQEYKILLDVKTRLEQEIATYRRLLEGE DVKTRLEQEIATYRRLLEGEDAHLTQYKKE R L E R R L 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 1 1277.6728 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P35900;CON__Q9D312;P35900;P02533;CON__P02533;CON__Q61782;CON__Q04695;Q04695;F5GWP8;A0A3B3IS58;CON__Q6IFX2 CON__Q04695 377 386 KRT16;KRT20;KRT14;KRT17 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.0098786 44.203 By MS/MS By MS/MS 1 2 0.3244 0.32852 68.56 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48541 0.53347 NaN 1 1 Median 0.2168 0.20231 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2801000 2494800 306150 0 0 0 0 0 0 1455800 1361500 94328 1345100 1133300 211830 0 0 0 0 0 0 + 19534 768;739;754;787 20362 101903;101904;101905 103545;103546;103547 103546 3 LEQEKELLHSQNTWLNTELK ELQASDVSVKYREKRLEQEKELLHSQNTWL ELLHSQNTWLNTELKTKTDELLALGREKGN R L E L K T 0 0 2 0 0 2 4 0 1 0 5 2 0 0 0 1 2 1 0 0 0 0 20 1 2452.2598 P12270 P12270 183 202 TPR Nucleoprotein TPR yes yes 3 9.098E-09 64.723 By matching By MS/MS 1 1 0.97905 1.0572 13.375 2 Median 1.1526 1.1621 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83163 0.96182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11455000 5828300 5626700 2653400 1428900 1224500 0 0 0 8801600 4399400 4402200 0 0 0 0 0 0 0 0 0 19535 1978 20363 101906;101907 103548;103549 103548 2 LEQELFSGGNTGINFEK SDEDDWSKPLPPSERLEQELFSGGNTGINF QELFSGGNTGINFEKYDDIPVEATGNNCPP R L E E K Y 0 0 2 0 0 1 3 3 0 1 2 1 0 2 0 1 1 0 0 0 0 0 17 0 1881.9109 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;O15523;A0A2R8Y650;A0A2R8YCU0;C9J8G5;C9J081 A0A2U3TZJ9 145 161 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 1.0883E-24 191.48 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 3 2 1.0632 0.9034 29.554 11 Median 0.87759 0.80679 38.415 3 1 Median 0.70994 0.64395 NaN 1 0 Median 1.127 1.1163 NaN 1 0 Median 1.0632 0.9034 NaN 1 0 Median 1.281 1.3058 7.6366 3 0 Median 0.99514 0.80458 3.6022 2 0 Median 96583000 46139000 50444000 29707000 14813000 14894000 278410 137260 141150 35931000 17439000 18492000 5414200 2633300 2780900 24455000 10735000 13719000 797030 380840 416190 19536 263 20364 101908;101909;101910;101911;101912;101913;101914;101915;101916;101917;101918 103550;103551;103552;103553;103554;103555;103556;103557;103558;103559;103560 103552 11 LEQELVQK EWRWKYEEERRKVVRLEQELVQKTEECKTQ ERRKVVRLEQELVQKTEECKTQAAAYLDLE R L E Q K T 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 985.54441 Q8N283;F6XZD3 Q8N283 312 319 ANKRD35 Ankyrin repeat domain-containing protein 35 yes no 2 0.044461 54.157 By MS/MS 1 0.72814 0.81079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72814 0.81079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5590800 3248100 2342600 0 0 0 0 0 0 5590800 3248100 2342600 0 0 0 0 0 0 0 0 0 19537 3361 20365 101919 103561 103561 1 LEQENDDLAHELVTSK RFERENRRLQEANMRLEQENDDLAHELVTS EQENDDLAHELVTSKIALRKDLDNAEEKAD R L E S K I 1 0 1 2 0 1 3 0 1 0 3 1 0 0 0 1 1 0 0 1 0 0 16 0 1839.885 Q9Y3P9;A0A0U1RQV7;E9PS63;F5H8L0;B7ZAP0 Q9Y3P9 852 867 RABGAP1;RABGAP1L Rab GTPase-activating protein 1;Rab GTPase-activating protein 1-like, isoform 10 yes no 3 0.046686 20.939 By MS/MS 1 1.2094 1.1783 NaN 1 Median 1.2094 1.1783 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5572400 2572700 2999700 5572400 2572700 2999700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19538 4432 20366 101920 103562 103562 1 LEQEQLER LERERLERERLERERLEQEQLERERQERER ERLERERLEQEQLERERQERERQERLERQE R L E E R E 0 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1043.5247 A0A0U1RRM6;Q8N8S7;A0A075B6E5;A0A0U1RQP7 A0A0U1RRM6 190 197 ENAH Protein enabled homolog yes no 2 0.0027178 105.57 By MS/MS By MS/MS 1 1 1.2842 1.3033 11.031 2 Median 1.2276 1.2055 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3435 1.409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7494100 3230100 4264000 2475100 1033100 1442100 0 0 0 5019000 2197000 2821900 0 0 0 0 0 0 0 0 0 19539 313 20367 101921;101922 103563;103564;103565;103566 103565 4 LEQEVAR ATVAREEQERLEELRLEQEVARQGLEGSLR QERLEELRLEQEVARQGLEGSLRVAEQAQE R L E A R Q 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 843.44503 Q5TZA2;B1AKD8;A0A087WW81 Q5TZA2 795 801 CROCC Rootletin yes no 2 0.025249 54.525 By MS/MS By MS/MS 2 2 1.1775 1.0756 8.5244 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9697 1.0047 0.92947 2 0 Median 1.4614 1.1622 2.2482 2 0 Median 7688600 3597100 4091500 0 0 0 0 0 0 0 0 0 0 0 0 4232100 2162600 2069500 3456500 1434500 2022000 19540 3107 20368 101923;101924;101925;101926 103567;103568;103569;103570;103571 103567 5 LEQGGTADGLR KYDEELEGERPHSFRLEQGGTADGLREREL HSFRLEQGGTADGLRERELEEIRAKLRLQA R L E L R E 1 1 0 1 0 1 1 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1115.5571 O43290 O43290 351 361 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 1.3055E-06 113.62 By MS/MS By MS/MS By MS/MS 1 1 1 0.97487 0.93105 20.831 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75074 0.80353 NaN 1 0 Median 1.2659 1.0788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3774300 1895200 1879100 0 0 0 0 0 0 2413300 1300000 1113300 1361000 595180 765780 0 0 0 0 0 0 19541 1563 20369 101927;101928;101929 103572;103573;103574;103575;103576 103574 5 LEQGQAIDDLMPAQK MVVDGVKLLIEMEQRLEQGQAIDDLMPAQK LEQGQAIDDLMPAQK_______________ R L E Q K - 2 0 0 2 0 3 1 1 0 1 2 1 1 0 1 0 0 0 0 0 0 0 15 0 1655.8189 P12277;H0YJG0 P12277 367 381 CKB Creatine kinase B-type yes no 2;3 1.9295E-09 103.44 By MS/MS By MS/MS By MS/MS 3 2 4 0.69102 0.695 10.697 9 Median 0.69102 0.633 8.2746 3 0 Median 0.9488 0.82031 1.1149 2 0 Median 0.66801 0.68941 7.0118 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201630000 114680000 86948000 106450000 60667000 45786000 8872700 4492600 4380100 86302000 49521000 36782000 0 0 0 0 0 0 0 0 0 19542 1980 20370;20371 101930;101931;101932;101933;101934;101935;101936;101937;101938 103577;103578;103579;103580;103581;103582;103583;103584;103585;103586;103587;103588;103589;103590 103583 759 14 LEQGYELQFR LLLNEMEKLEKTLFRLEQGYELQFRLGPTL KTLFRLEQGYELQFRLGPTLQGKAVTVYTN R L E F R L 0 1 0 0 0 2 2 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 10 0 1281.6354 P35573 P35573 25 34 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.00066973 108.98 By MS/MS By MS/MS By matching 1 2 1 1.3565 1.1439 55.458 4 Median 1.0159 0.95406 NaN 1 0 Median 1.3565 1.1439 4.8202 2 2 Median NaN NaN NaN 0 0 Median 3.7164 3.2169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14682000 7039400 7642500 10081000 5127900 4952700 4452100 1875700 2576400 0 0 0 149150 35795 113360 0 0 0 0 0 0 19543 2243 20372 101939;101940;101941;101942 103591;103592;103593;103594 103591 4 LEQIAAEQK ELTQIKSNIDALLSRLEQIAAEQKANPDGK DALLSRLEQIAAEQKANPDGKKKGDGGGAG R L E Q K A 2 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 208 216 RALY RNA-binding protein Raly yes no 2 7.4362E-05 149.65 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 1.3315 1.1206 22.412 9 Median 1.4399 1.4528 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92483 0.89043 NaN 1 0 Median 1.5034 1.2693 NaN 1 0 Median 1.0498 1.0719 24.141 3 2 Median 1.3315 1.1206 27.37 3 1 Median 58780000 27325000 31456000 3210500 1286500 1924000 0 0 0 1894300 950500 943770 1583700 603950 979700 37458000 18328000 19130000 14634000 6155700 8478200 19544 4313 20373 101943;101944;101945;101946;101947;101948;101949;101950;101951 103595;103596;103597;103598;103599;103600;103601;103602;103603;103604 103598 10 LEQIDGHIAEHNSK NEHALQKDALSIKLKLEQIDGHIAEHNSKI KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L E S K I 1 0 1 1 0 1 2 1 2 2 1 1 0 0 0 1 0 0 0 0 0 0 14 0 1589.7798 Q9NTJ3;E9PD53 Q9NTJ3 1018 1031 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.050731 13.119 By MS/MS By MS/MS 1 1 1.0879 0.96891 21.659 2 Median NaN NaN NaN 0 0 Median 0.95347 0.83132 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2413 1.1293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1951700 973280 978460 0 0 0 1071600 537940 533680 0 0 0 880120 435340 444780 0 0 0 0 0 0 19545 4108 20374 101952;101953 103605;103606;103607 103607 3 LEQLAARFDR ERELALRTELIRQEKLEQLAARFDRKAAMR IRQEKLEQLAARFDRKAAMRETWLSENQRL K L E D R K 2 2 0 1 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 10 1 1217.6517 O15020;A4QPE4 O15020 423 432 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 2 0.044742 57.96 By MS/MS 1 6.3392 6.1115 NaN 1 Median NaN NaN NaN 0 0 Median 6.3392 6.1115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10267000 1923300 8343900 0 0 0 10267000 1923300 8343900 0 0 0 0 0 0 0 0 0 0 0 0 19546 1512 20375 101954 103608 103608 1 LEQLFQDEVAK SLLQRERFIEQEKAKLEQLFQDEVAKAQQL EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K L E A K A 1 0 0 1 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1318.6769 Q15149;H0YDN1 Q15149 2653 2663 PLEC Plectin yes no 2 0.0047915 71.349 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19547 2933 20376 101955;101956 103609;103610 103610 2 LEQLGAQR TYEHFNAMGKYVDKRLEQLGAQRIFELGLG GKYVDKRLEQLGAQRIFELGLGDDDGNLEE R L E Q R I 1 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 913.49813 P16435;H0Y4R2 P16435 192 199 POR NADPH--cytochrome P450 reductase yes no 2 0.0028236 104.45 By matching By MS/MS By matching By matching 1 1 1 1 1.5981 0.9977 34.969 4 Linear 1.2207 1.2157 NaN 1 0 Median 1.3886 1.2055 NaN 1 0 Median 0.59477 0.58536 NaN 1 0 Median 0.9541 0.8257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4901700 2178500 2723200 842010 416550 425460 3326900 1386800 1940100 191300 113690 77601 541530 261460 280070 0 0 0 0 0 0 19548 2030 20377 101957;101958;101959;101960 103611 103611 1 LEQLGIPR IFYVNYLSELSEHVKLEQLGIPRQVLKYDD ELSEHVKLEQLGIPRQVLKYDDFLKSTQKS K L E P R Q 0 1 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 8 0 924.53927 Q07960;H0YE29 Q07960 201 208 ARHGAP1 Rho GTPase-activating protein 1 yes no 2 0.017646 48.504 By matching By MS/MS By matching By matching 1 1 2 2 0.9813 0.8495 21.565 6 Median 1.1213 1.0841 NaN 1 0 Median 1.3578 1.1686 NaN 1 0 Median 0.69193 0.71013 11.135 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9813 0.8495 4.1616 2 0 Median 22110000 10649000 11461000 7716700 3401600 4315100 2307500 955030 1352500 8560700 4431200 4129500 0 0 0 0 0 0 3525400 1861300 1664200 19549 2734 20378 101961;101962;101963;101964;101965;101966 103612 103612 1 LEQLSAAELQSR AGIARELERVEQQSRLEQLSAAELQSRNQG QSRLEQLSAAELQSRNQGHWADWLQAYRAR R L E S R N 2 1 0 0 0 2 2 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 12 0 1343.7045 A0A087X0Q9;Q9BVL4 A0A087X0Q9 539 550 SELO Selenoprotein O yes no 2 0.00078006 90.05 By MS/MS 1 0.76656 0.74634 NaN 1 Median 0.76656 0.74634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4847000 3055500 1791400 4847000 3055500 1791400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19550 110 20379 101967 103613 103613 1 LEQMPSK FRSWGRVGTVIGSNKLEQMPSKEDAIEHFM GTVIGSNKLEQMPSKEDAIEHFMKLYEEKT K L E S K E 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 7 0 831.41604 P09874 P09874 601 607 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0067587 91.906 By MS/MS 1 0.95901 0.80527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95901 0.80527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1352300 673390 678890 0 0 0 0 0 0 0 0 0 1352300 673390 678890 0 0 0 0 0 0 19551 1922 20380 101968 103614;103615;103616 103615 3 LEQMPSKEDAIEHFMK FRSWGRVGTVIGSNKLEQMPSKEDAIEHFM EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF K L E M K L 1 0 0 1 0 1 3 0 1 1 1 2 2 1 1 1 0 0 0 0 0 0 16 1 1931.9121 P09874 P09874 601 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 2.6332E-10 103.39 By matching By MS/MS By MS/MS By MS/MS By matching 2 21 26 3 5 1.0383 1.0369 20.055 56 Median 0.49051 0.51563 43.136 2 0 Median NaN NaN NaN 0 0 Median 0.88011 1.0288 16.374 21 0 Median 1.0834 1.0396 12.518 25 0 Median 1.0544 1.1809 10.302 3 0 Median 1.169 1.0146 11.575 5 0 Median 1021600000 523580000 498040000 13882000 9483000 4399200 0 0 0 647550000 342050000 305490000 338930000 160840000 178090000 14285000 8054200 6231100 6976000 3151100 3824900 19552 1922 20381;20382;20383 101969;101970;101971;101972;101973;101974;101975;101976;101977;101978;101979;101980;101981;101982;101983;101984;101985;101986;101987;101988;101989;101990;101991;101992;101993;101994;101995;101996;101997;101998;101999;102000;102001;102002;102003;102004;102005;102006;102007;102008;102009;102010;102011;102012;102013;102014;102015;102016;102017;102018;102019;102020;102021;102022;102023;102024;102025 103617;103618;103619;103620;103621;103622;103623;103624;103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636;103637;103638;103639;103640;103641;103642;103643;103644;103645;103646;103647;103648;103649;103650;103651;103652;103653;103654;103655;103656;103657;103658;103659;103660;103661;103662 103637 698;704 46 LEQPDLSSEMSK PDQRRLPPEQESLSRLEQPDLSSEMSKVSK LSRLEQPDLSSEMSKVSKPRASKPGRKRGG R L E S K V 0 0 0 1 0 1 2 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 12 0 1362.6337 Q8WUA4;A0A087WZD8;C9JNH7 Q8WUA4 79 90 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0035847 69.01 By MS/MS 1 0.77057 0.83761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77057 0.83761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15578000 8713700 6864600 0 0 0 0 0 0 15578000 8713700 6864600 0 0 0 0 0 0 0 0 0 19553 3487 20384 102026 103663 103663 1 LEQPDPGAVAAAAILR MEAGAGRASYISSARLEQPDPGAVAAAAIL EQPDPGAVAAAAILRAILEVLQS_______ R L E L R A 5 1 0 1 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 16 0 1590.873 Q3LXA3 Q3LXA3 552 567 DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes yes 2 0.0010257 39.148 By MS/MS By matching 1 1 0.8537 0.77692 54.617 2 Median 0.55008 0.52802 NaN 1 0 Median 1.3249 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8605000 5276200 3328800 7374900 4687100 2687800 1230100 589150 640970 0 0 0 0 0 0 0 0 0 0 0 0 19554 3012 20385 102027;102028 103664 103664 1 LEQQSVPAAVFGSLKED DEDEDEMDLEPNEVRLEQQSVPAAVFGSLK QQSVPAAVFGSLKED_______________ R L E E D - 2 0 0 1 0 2 2 1 0 0 2 1 0 1 1 2 0 0 0 2 0 0 17 1 1816.9207 Q9HCS7 Q9HCS7 839 855 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.027814 28.764 By MS/MS 1 0.77017 0.84675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77017 0.84675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3599600 2002900 1596800 0 0 0 0 0 0 3599600 2002900 1596800 0 0 0 0 0 0 0 0 0 19555 4032 20386 102029 103665 103665 1 LEQQVPVNQVFGQDEMIDVIGVTK NGGTVAEKLDWARERLEQQVPVNQVFGQDE VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R L E T K G 0 0 1 2 0 4 2 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 24 0 2685.3684 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2 P39023 201 224 RPL3 60S ribosomal protein L3 yes no 2;3 8.8393E-12 59.261 By MS/MS By MS/MS By MS/MS By matching By matching 9 3 2 1 1 0.92371 0.90109 11.359 16 Median 0.89008 0.88335 14.603 9 0 Median 1.0028 0.89197 6.4207 3 0 Median 0.91456 0.94705 4.406 2 0 Median 1.1 0.98035 NaN 1 0 Median 0.94967 0.91923 NaN 1 0 Median NaN NaN NaN 0 0 Median 72092000 36087000 36006000 61608000 30975000 30632000 3028500 1463500 1565000 6731300 3286600 3444700 293690 124380 169310 431330 237240 194090 0 0 0 19556 2281 20387;20388 102030;102031;102032;102033;102034;102035;102036;102037;102038;102039;102040;102041;102042;102043;102044;102045 103666;103667;103668;103669;103670;103671;103672 103668 1037 7 LEQSEAQLGR NADYTTGQVFDLSEKLEQSEAQLGRGSFML DLSEKLEQSEAQLGRGSFMLGLETHDRKSE K L E G R G 1 1 0 0 0 2 2 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1129.5728 Q92905 Q92905 273 282 COPS5 COP9 signalosome complex subunit 5 yes yes 2 0.00073339 99.442 By MS/MS By MS/MS By MS/MS 1 1 1 1.1472 0.96152 31.802 3 Median 0.71714 0.69501 NaN 1 0 Median 1.1472 0.96152 NaN 1 0 Median 1.3739 1.3128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5030200 2235200 2795000 1129100 566810 562240 2825300 1286700 1538600 1075900 381730 694140 0 0 0 0 0 0 0 0 0 19557 3565 20389 102046;102047;102048 103673;103674;103675;103676 103676 4 LEQSTIVK FEKAKESWEMNSEEKLEQSTIVKERGTVYF EMNSEEKLEQSTIVKERGTVYFKEGKYKQA K L E V K E 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 916.52295 Q02790 Q02790 267 274 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.0032257 100.19 By MS/MS 1 1.1569 0.98358 NaN 1 Median NaN NaN NaN 0 0 Median 1.1569 0.98358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5995000 2830300 3164700 0 0 0 5995000 2830300 3164700 0 0 0 0 0 0 0 0 0 0 0 0 19558 2701 20390 102049 103677;103678 103677 2 LEQSYEALCELAAARR YRPCDPQLVSERVAKLEQSYEALCELAAAR EQSYEALCELAAARRARLEESRRLWRFLWE K L E R R A 4 2 0 0 1 1 3 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 16 1 1878.9258 O15020 O15020 619 634 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.071892 5.5426 By MS/MS By matching 2 1 1.5051 1.4891 21.284 3 Median NaN NaN NaN 0 0 Median 1.5051 1.4891 0 2 0 Median NaN NaN NaN 0 0 Median 1.1624 1.03 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7845300 3199500 4645800 0 0 0 4623900 1781200 2842800 0 0 0 3221300 1418300 1803000 0 0 0 0 0 0 19559 1512 20391 102050;102051;102052 103679 103679 1 LEQVLSSMK EHHLSEVQNMASEEKLEQVLSSMKENKVAI MASEEKLEQVLSSMKENKVAIIGKIHTPME K L E M K E 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 0 1 0 0 9 0 1033.5478 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 97 105 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0025939 99.802 By MS/MS 2 1.3774 1.1759 NaN 1 Median NaN NaN NaN 0 0 Median 1.3774 1.1759 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6924900 2867000 4057800 0 0 0 6924900 2867000 4057800 0 0 0 0 0 0 0 0 0 0 0 0 19560 96 20392 102053;102054 103680;103681 103680 2 LEQYTSAIEGTK KSTHQAAIVSKIDSRLEQYTSAIEGTKSAK DSRLEQYTSAIEGTKSAKPTKPAASDLPVP R L E T K S 1 0 0 0 0 1 2 1 0 1 1 1 0 0 0 1 2 0 1 0 0 0 12 0 1338.6667 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 418 429 CALD1 Caldesmon yes no 2 2.4727E-10 180.36 By matching By MS/MS By MS/MS 1 1 2 0.89827 0.82165 11.606 4 Median NaN NaN NaN 0 0 Median 0.89522 0.75847 NaN 1 0 Median 0.90133 0.88778 NaN 1 0 Median 0.99619 0.85321 16.277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66173000 34049000 32124000 0 0 0 5424600 2574700 2850000 48713000 24922000 23791000 12036000 6552700 5483000 0 0 0 0 0 0 19561 928 20393 102055;102056;102057;102058 103682;103683;103684;103685;103686 103683 5 LERPPETPTVDPTVKYER EGRPGKKLKKVKLRKLERPPETPTVDPTVK PPETPTVDPTVKYERQPEYLDATGGTLHPY K L E E R Q 0 2 0 1 0 0 3 0 0 0 1 1 0 0 4 0 3 0 1 2 0 0 18 2 2126.1008 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 697 714 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 4 0.014068 30.969 By MS/MS 1 0.3694 0.44391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3694 0.44391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7426800 4904400 2522400 0 0 0 0 0 0 7426800 4904400 2522400 0 0 0 0 0 0 0 0 0 19562 246 20394 102059 103687 103687 1 LESAEGVLRPGAIR QLQARQRLARRKRQRLESAEGVLRPGAIRD RLESAEGVLRPGAIRDGPATGLGSFLRRTA R L E I R D 2 2 0 0 0 0 2 2 0 1 2 0 0 0 1 1 0 0 0 1 0 0 14 1 1466.8205 Q07864;F5H1D6 Q07864 1295 1308 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 3 0.0032164 34.179 By matching By MS/MS 1 1 1.3027 1.3538 10.151 2 Median 1.3601 1.4545 NaN 1 0 Median 1.2478 1.26 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4112500 1873100 2239400 2479500 1182600 1296900 1633100 690490 942570 0 0 0 0 0 0 0 0 0 0 0 0 19563 1020 20395 102060;102061 103688 103688 1 LESALTELEQLR EQETTSSKITELQLKLESALTELEQLRKSR QLKLESALTELEQLRKSRQHQMQLVDSIVR K L E L R K 1 1 0 0 0 1 3 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 12 0 1400.7511 P12270 P12270 583 594 TPR Nucleoprotein TPR yes yes 2 3.6978E-06 119.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1.038 1.0348 10.297 8 Median 0.96707 0.96986 8.9078 2 0 Median 1.1206 0.9269 NaN 1 0 Median 0.96028 1.0457 1.2198 2 0 Median 1.2599 1.1015 19.124 2 0 Median 1.0474 1.0746 NaN 1 0 Median NaN NaN NaN 0 0 Median 29267000 13850000 15417000 6690500 3129200 3561400 7291800 3327500 3964300 13632000 6681300 6950900 974200 403560 570640 678610 308470 370140 0 0 0 19564 1978 20396 102062;102063;102064;102065;102066;102067;102068;102069 103689;103690;103691;103692;103693;103694;103695;103696;103697;103698;103699;103700;103701 103689 13 LESALTELEQLRK EQETTSSKITELQLKLESALTELEQLRKSR LKLESALTELEQLRKSRQHQMQLVDSIVRQ K L E R K S 1 1 0 0 0 1 3 0 0 0 4 1 0 0 0 1 1 0 0 0 0 0 13 1 1528.8461 P12270 P12270 583 595 TPR Nucleoprotein TPR yes yes 2;3 1.5266E-07 105.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 1 1.1383 1.1578 47.257 11 Median 1.1396 1.1671 8.7981 2 0 Median 1.7527 1.6517 5.6871 2 0 Median 0.78957 0.92449 61.41 4 1 Median 1.3459 1.2763 26.22 2 0 Median 1.162 1.3199 NaN 1 0 Median NaN NaN NaN 0 0 Median 73030000 36546000 36483000 15195000 6673300 8521700 7136400 2749100 4387300 47779000 25794000 21985000 990610 385890 604720 1929000 944580 984370 0 0 0 19565 1978 20397 102070;102071;102072;102073;102074;102075;102076;102077;102078;102079;102080 103702;103703;103704;103705;103706;103707;103708;103709;103710 103704 9 LESAQATFQAHR EELSLGPRDAGTRGRLESAQATFQAHRDKY RGRLESAQATFQAHRDKYEKLRGDVAIKLK R L E H R D 3 1 0 0 0 2 1 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 12 0 1357.6739 A0A087X1E4;P53365 A0A087X1E4 291 302 ARFIP2 Arfaptin-2 yes no 2;3 0.00047328 77.062 By MS/MS By MS/MS 3 2 1.0766 1.0673 14.465 3 Median 1.1081 1.1021 4.5408 2 2 Median 1.002 0.86326 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11027000 4913800 6113200 8414700 3537800 4876900 2612300 1376000 1236300 0 0 0 0 0 0 0 0 0 0 0 0 19566 119 20398 102081;102082;102083;102084;102085 103711;103712;103713;103714;103715 103714 5 LESDYEILER RLLILMEARLSALYKLESDYEILERFPGAY SALYKLESDYEILERFPGAYLKGKKYRPLF K L E E R F 0 1 0 1 0 0 3 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1265.6139 P41252;A0A0A0MSX9;J3KR24;Q5TCD1 P41252 269 278 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00025925 127.3 By MS/MS By MS/MS By MS/MS 1 1 1 1.1097 0.99552 2.7858 3 Plateau 1.0345 0.99552 NaN 1 0 Median 1.1753 0.98474 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1097 0.94436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32889000 15994000 16895000 21549000 10775000 10774000 8745300 3960900 4784400 0 0 0 2594900 1258100 1336800 0 0 0 0 0 0 19567 2302 20399 102086;102087;102088 103716;103717;103718;103719;103720 103717 5 LESEEEGVPSTAIR RHKTTGQVVAMKKIRLESEEEGVPSTAIRE RLESEEEGVPSTAIREISLLKELRHPNIVS R L E I R E 1 1 0 0 0 0 4 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 14 0 1515.7417 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 37 50 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 6.5451E-08 149.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.85304 0.70935 21.377 5 Median 0.90653 0.84766 NaN 1 0 Median 0.85304 0.70935 NaN 1 0 Median 0.99057 0.96149 NaN 1 0 Median 0.84322 0.70363 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67981 0.54688 NaN 1 0 Median 89781000 45464000 44317000 6838500 3410000 3428500 18483000 9600900 8882200 35728000 17110000 18619000 22459000 11574000 10885000 0 0 0 6271800 3768500 2503200 19568 1871 20400 102089;102090;102091;102092;102093 103721;103722;103723;103724;103725;103726;103727;103728;103729 103728 9 LESEGSPETLTNLR MELRAKEEERLNKLRLESEGSPETLTNLRK RLESEGSPETLTNLRKGYLFMYNLVQFLGF R L E L R K 0 1 1 0 0 0 3 1 0 0 3 0 0 0 1 2 2 0 0 0 0 0 14 0 1544.7682 Q9P035;H3BS72;H3BPZ1;H3BRL8;H3BMZ1 Q9P035 133 146 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 1.6468E-16 187.42 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 0.99655 0.91862 18.596 12 Median 0.82379 0.78246 9.33 2 0 Median 1.0831 0.89414 21.459 4 0 Median 0.8948 0.93231 16.208 3 0 Median 1.2667 1.1032 7.5491 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 372180000 187750000 184440000 137630000 75967000 61661000 157280000 71966000 85315000 70917000 36904000 34013000 6358400 2911800 3446600 0 0 0 0 0 0 19569 4200 20401 102094;102095;102096;102097;102098;102099;102100;102101;102102;102103;102104;102105 103730;103731;103732;103733;103734;103735;103736;103737;103738;103739;103740;103741;103742;103743;103744;103745;103746;103747;103748;103749;103750 103733 21 LESEGSPETLTNLRK MELRAKEEERLNKLRLESEGSPETLTNLRK LESEGSPETLTNLRKGYLFMYNLVQFLGFS R L E R K G 0 1 1 0 0 0 3 1 0 0 3 1 0 0 1 2 2 0 0 0 0 0 15 1 1672.8632 Q9P035;H3BS72;H3BPZ1;H3BRL8;H3BMZ1 Q9P035 133 147 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2;3 6.8731E-10 152.85 By MS/MS By MS/MS By MS/MS By matching 4 4 3 1 0.95023 1.0535 15.728 12 Median 0.85958 0.89988 6.8542 4 0 Median 1.191 1.109 16.714 4 0 Median 1.0264 1.0732 7.0451 3 1 Plateau 1.3396 1.2478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 211170000 103930000 107240000 78694000 41950000 36744000 95135000 43508000 51627000 36388000 18101000 18286000 948570 368390 580190 0 0 0 0 0 0 19570 4200 20402 102106;102107;102108;102109;102110;102111;102112;102113;102114;102115;102116;102117 103751;103752;103753;103754;103755;103756;103757;103758;103759;103760;103761;103762;103763;103764;103765 103759 15 LESEHPDQAQAILSR AIEAKLSDLQKEAEKLESEHPDQAQAILSR LESEHPDQAQAILSRLAEISDVWEEMKTTL K L E S R L 2 1 0 1 0 2 2 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 15 0 1692.8431 Q01082;A0A087WUZ3 Q01082 1022 1036 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 2.8236E-11 128.71 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.95166 0.87172 20.933 6 Median NaN NaN NaN 0 0 Median 1.0386 0.85956 14.03 2 0 Median 0.85351 0.93023 NaN 1 0 Median 1.2015 1.0527 35.865 2 0 Median NaN NaN NaN 0 0 Median 0.94202 0.78508 NaN 1 0 Median 39957000 20238000 19719000 0 0 0 14219000 6354100 7864700 13739000 7579100 6159900 10401000 5431300 4969300 0 0 0 1599000 873860 725160 19571 2681 20403 102118;102119;102120;102121;102122;102123 103766;103767;103768;103769 103766 4 LESELANFGPR TKTRHLALNLQEKSKLESELANFGPRINDI EKSKLESELANFGPRINDIKRIIQSREREM K L E P R I 1 1 1 0 0 0 2 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 11 0 1231.6197 Q14683;G8JLG1 Q14683 737 747 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00011928 135.79 By matching By matching By MS/MS 1 1 1 0.80798 0.83646 120.3 3 Plateau 0.73679 0.73256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10794 0.097749 NaN 1 0 Median 0.80798 0.83646 NaN 1 0 Median NaN NaN NaN 0 0 Median 9600200 5604800 3995400 1717600 917630 800010 0 0 0 0 0 0 385600 293570 92033 7497000 4393600 3103300 0 0 0 19572 2889 20404 102124;102125;102126 103770;103771 103770 2 LESEMEDAYHEHQANLLR QREQVEKNMKDAKDKLESEMEDAYHEHQAN EMEDAYHEHQANLLRQDLMRRQEELRRMEE K L E L R Q 2 1 1 1 0 1 4 0 2 0 3 0 1 0 0 1 0 0 1 0 0 0 18 0 2183.9906 P23246;H0Y9K7 P23246 519 536 SFPQ Splicing factor, proline- and glutamine-rich yes no 3;4 1.9915E-13 125.52 By MS/MS By MS/MS 2 3 1.4133 1.218 23.708 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.219 1.3001 43.965 2 0 Median 1.4133 1.218 12.544 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37357000 16415000 20942000 0 0 0 0 0 0 26905000 12262000 14643000 10452000 4153000 6299300 0 0 0 0 0 0 19573 2107 20405;20406 102127;102128;102129;102130;102131 103772;103773;103774;103775;103776;103777;103778 103773 867 7 LESENDEYER QANPNSEEIWLAAVKLESENDEYERARRLL LAAVKLESENDEYERARRLLAKARSSAPTA K L E E R A 0 1 1 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1282.5313 O94906 O94906 651 660 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 2.1367E-10 174.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1 2 1.1014 0.96882 11.573 10 Median 0.90728 0.88794 NaN 1 0 Median 1.2679 1.0638 NaN 1 0 Median 0.86514 0.91792 21.606 3 0 Median 1.1014 0.94185 0.0063368 2 0 Median 0.94707 1.0006 NaN 1 0 Median 1.2002 1.0191 3.1664 2 0 Median 37357000 18171000 19186000 2677200 1504000 1173200 7604400 3435700 4168700 15097000 7870900 7225800 7504900 3423100 4081800 3431500 1519600 1911800 1042600 417650 624970 19574 1735 20407 102132;102133;102134;102135;102136;102137;102138;102139;102140;102141 103779;103780;103781;103782;103783;103784;103785;103786;103787;103788;103789;103790;103791;103792;103793;103794 103788 16 LESESSDVLSK TRAVVVRKIETHDGKLESESSDVLSK____ HDGKLESESSDVLSK_______________ K L E S K - 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 4 0 0 0 1 0 0 11 0 1192.5823 CON__Q9H552 CON__Q9H552 489 499 yes yes 2 0.019856 53.751 By MS/MS 1 1.3184 1.1178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3184 1.1178 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1432400 531680 900750 0 0 0 0 0 0 0 0 0 1432400 531680 900750 0 0 0 0 0 0 + 19575 792 20408 102142 103795 103795 1 LESFLHDSWR AKKEQKKGKGLRFKRLESFLHDSWRQKRDK LRFKRLESFLHDSWRQKRDKVRLRRLEVKP R L E W R Q 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 2 0 1 0 0 0 0 10 0 1288.62 Q6DKI1;R4GMU7 Q6DKI1 61 70 RPL7L1 60S ribosomal protein L7-like 1 yes no 2;3 0.00039551 78.334 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.108 1.1097 23.987 7 Median 0.73177 0.73897 NaN 1 0 Median 1.3186 1.1273 NaN 1 0 Median 0.7393 0.69054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0889 1.0914 2.3527 2 0 Median 1.4587 1.2266 5.6128 2 0 Median 21148000 10047000 11101000 2144900 1147200 997670 491130 220360 270780 1043400 472590 570770 0 0 0 14517000 6954200 7562500 2951700 1252700 1699100 19576 3132 20409 102143;102144;102145;102146;102147;102148;102149 103796;103797;103798;103799;103800 103799 5 LESGMQNMSIHTK EIATYRKLLEGEESRLESGMQNMSIHTKTT SRLESGMQNMSIHTKTTSGYAGGLSSAYGG R L E T K T 0 0 1 0 0 1 1 1 1 1 1 1 2 0 0 2 1 0 0 0 0 0 13 0 1474.6908 P05787;CON__P05787;CON__REFSEQ:XP_092267 P05787 402 414 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 2.9415E-15 185.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 10 8 12 20 1.2658 1.1364 27.937 63 Median 1.8426 1.7262 57.194 6 0 Median 1.382 1.1707 13.746 7 0 Median 1.23 1.1823 14.249 10 1 Median 1.3064 1.1375 12.683 8 1 Median 1.3797 1.3631 14.567 12 3 Median 1.183 0.98745 12.661 20 0 Plateau 1283700000 558000000 725730000 133660000 58496000 75162000 110140000 44724000 65417000 406530000 180220000 226310000 265360000 117300000 148060000 233570000 96250000 137320000 134470000 61009000 73459000 + 19577 750 20410;20411 102150;102151;102152;102153;102154;102155;102156;102157;102158;102159;102160;102161;102162;102163;102164;102165;102166;102167;102168;102169;102170;102171;102172;102173;102174;102175;102176;102177;102178;102179;102180;102181;102182;102183;102184;102185;102186;102187;102188;102189;102190;102191;102192;102193;102194;102195;102196;102197;102198;102199;102200;102201;102202;102203;102204;102205;102206;102207;102208;102209;102210;102211;102212 103801;103802;103803;103804;103805;103806;103807;103808;103809;103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822;103823;103824;103825;103826;103827;103828;103829;103830;103831;103832;103833;103834;103835;103836;103837;103838;103839;103840;103841;103842;103843;103844;103845;103846;103847;103848;103849;103850;103851;103852;103853;103854;103855;103856;103857;103858;103859;103860;103861;103862;103863;103864;103865;103866;103867;103868;103869;103870;103871;103872;103873;103874;103875;103876;103877;103878;103879;103880;103881;103882;103883 103862 271;272 83 LESLNIQR RILARRQTIEERKERLESLNIQREKEELEQ IEERKERLESLNIQREKEELEQREAELQKV R L E Q R E 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 971.53999 Q14152 Q14152 582 589 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 1.027E-09 178.84 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 3 2 1 3 3 1.2044 1.0448 17.834 13 Median 0.87907 0.84193 21.329 2 0 Median 1.2642 1.1125 11.997 2 0 Median 1.1555 1.2438 16.658 2 0 Median 1.1852 1.0403 NaN 1 0 Median 1.0453 1.0448 22.141 3 0 Median 1.3154 1.0709 6.369 3 0 Median 150930000 68507000 82428000 35265000 15399000 19866000 26126000 11899000 14227000 6109300 2898500 3210800 1955100 842060 1113000 75477000 34970000 40507000 6002000 2497500 3504500 19578 2860 20412 102213;102214;102215;102216;102217;102218;102219;102220;102221;102222;102223;102224;102225;102226 103884;103885;103886;103887;103888;103889;103890;103891;103892;103893;103894 103885 11 LESLSAATTFEPLEPVK LLGSRGLDISHISQRLESLSAATTFEPLEP SLSAATTFEPLEPVKDTDIQGFLKNEKDNA R L E V K D 2 0 0 0 0 0 3 0 0 0 3 1 0 1 2 2 2 0 0 1 0 0 17 0 1830.9615 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 78 94 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0037324 32.946 By MS/MS By matching 1 1 0.8223 0.80398 0.39058 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73366 0.8062 NaN 1 0 Median 0.92165 0.80176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7075300 4010600 3064700 0 0 0 0 0 0 6479000 3710800 2768200 596330 299800 296530 0 0 0 0 0 0 19579 3356 20413 102227;102228 103895;103896 103896 2 LESLSAATTFEPLEPVKDTDIQGFLK LLGSRGLDISHISQRLESLSAATTFEPLEP PLEPVKDTDIQGFLKNEKDNALLSAIEESR R L E L K N 2 0 0 2 0 1 3 1 0 1 4 2 0 2 2 2 3 0 0 1 0 0 26 1 2848.4746 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 78 103 NUP93 Nuclear pore complex protein Nup93 yes no 3 4.5717E-05 30.306 By MS/MS 1 0.90234 0.87266 NaN 1 Median NaN NaN NaN 0 0 Median 0.90234 0.87266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1959300 955150 1004200 0 0 0 1959300 955150 1004200 0 0 0 0 0 0 0 0 0 0 0 0 19580 3356 20414 102229 103897;103898 103897 2 LESLSYQLSGLQK AASAAREELKEARMRLESLSYQLSGLQKQA MRLESLSYQLSGLQKQASAAEDRIRELEEA R L E Q K Q 0 0 0 0 0 2 1 1 0 0 4 1 0 0 0 3 0 0 1 0 0 0 13 0 1464.7824 Q03252 Q03252 314 326 LMNB2 Lamin-B2 yes yes 2;3 0.00013863 134.68 By MS/MS By MS/MS By MS/MS 2 1 3 0.799 0.7898 20.349 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80983 0.83006 28.391 2 1 Median 1.355 1.1522 NaN 1 0 Median 0.81718 0.79243 4.382 3 1 Plateau NaN NaN NaN 0 0 Median 87227000 46480000 40747000 0 0 0 0 0 0 43707000 22052000 21655000 4505500 1808700 2696800 39015000 22619000 16396000 0 0 0 19581 2709 20415 102230;102231;102232;102233;102234;102235 103899;103900;103901;103902;103903;103904;103905 103899 7 LESSEGEIIQTVDR KDFTLKTEELIESPKLESSEGEIIQTVDRQ KLESSEGEIIQTVDRQSVKSPEVQLLGHVE K L E D R Q 0 1 0 1 0 1 3 1 0 2 1 0 0 0 0 2 1 0 0 1 0 0 14 0 1574.7788 F8VXG7;Q99590;A0A0A0MTP7 F8VXG7 419 432 SCAF11 Protein SCAF11 yes no 2 5.0227E-09 132.76 By MS/MS By MS/MS 1 2 0.82751 0.87476 10.837 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6609 0.72684 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83664 0.87687 0.34143 2 0 Median NaN NaN NaN 0 0 Median 17350000 9301500 8048100 0 0 0 0 0 0 7607100 4404000 3203100 0 0 0 9742400 4897500 4845000 0 0 0 19582 1072 20416 102236;102237;102238 103906;103907;103908;103909 103906 4 LESSQLQIAGLEHLR VSHEAEVHAESLQQKLESSQLQIAGLEHLR LESSQLQIAGLEHLRELQPKLDELQKLISK K L E L R E 1 1 0 0 0 2 2 1 1 1 4 0 0 0 0 2 0 0 0 0 0 0 15 0 1692.9159 Q14789;E7EU81 Q14789 1374 1388 GOLGB1 Golgin subfamily B member 1 yes no 3 1.0456E-06 80.534 By MS/MS By MS/MS 1 1 1.9472 1.7167 33.138 2 Median 1.4 1.3581 NaN 1 1 Median 2.7082 2.17 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46518000 17549000 28970000 30392000 12745000 17647000 16127000 4803900 11323000 0 0 0 0 0 0 0 0 0 0 0 0 19583 2900 20417 102239;102240 103910;103911 103910 2 LESTARPSESSEEFLEEEPEQR DEKTSQTSLTASINKLESTARPSESSEEFL SESSEEFLEEEPEQRGIEFEDESSDRDARP K L E Q R G 1 2 0 0 0 1 8 0 0 0 2 0 0 1 2 4 1 0 0 0 0 0 22 1 2578.1671 D6RB01;Q9Y6X4 D6RB01 309 330 FAM169A Soluble lamin-associated protein of 75 kDa yes no 3 1.0791E-26 123.53 By MS/MS By matching 1 1 0.87484 0.89412 9.3562 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82673 0.95527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92575 0.83688 NaN 1 0 Median 17407000 9428600 7978500 0 0 0 0 0 0 16704000 9002900 7701300 0 0 0 0 0 0 702930 425770 277160 19584 814 20418 102241;102242 103912;103913 103913 2 LESTLNYGMER SEDGTVRIWHSSTYRLESTLNYGMERVWCV STYRLESTLNYGMERVWCVASLRGSNNVAL R L E E R V 0 1 1 0 0 0 2 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 11 0 1311.6129 P35606 P35606 263 273 COPB2 Coatomer subunit beta yes yes 2 3.592E-19 163.16 By MS/MS By MS/MS 1 5 1.1518 0.99375 96.258 6 Median 1.265 1.2385 NaN 1 1 Median 1.1376 0.98006 102.49 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32373000 15618000 16754000 12005000 5520100 6484900 20368000 10098000 10270000 0 0 0 0 0 0 0 0 0 0 0 0 19585 2246 20419 102243;102244;102245;102246;102247;102248 103914;103915;103916;103917 103914 4 LESTVGSPEKPLSDLGK GYGKFLIAFSYELSKLESTVGSPEKPLSDL STVGSPEKPLSDLGKLSYRSYWSWVLLEIL K L E G K L 0 0 0 1 0 0 2 2 0 0 3 2 0 0 2 3 1 0 0 1 0 0 17 1 1755.9254 Q9H7Z6;H3BMX5 Q9H7Z6 342 358 KAT8 Histone acetyltransferase KAT8;Histone acetyltransferase yes no 3 0.00016265 41.871 By MS/MS By MS/MS 1 2 0.8316 0.85002 17.817 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71696 0.7494 NaN 1 0 Median 0.96456 0.96415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12057000 6632000 5424600 0 0 0 0 0 0 8367500 4839300 3528200 3689100 1792700 1896400 0 0 0 0 0 0 19586 3984 20420 102249;102250;102251 103918;103919;103920;103921 103919 4 LESVHIILR ETYTPEVTKAYITSRLESVHIILRDGLEDP AYITSRLESVHIILRDGLEDPLEDTGLVQQ R L E L R D 0 1 0 0 0 0 1 0 1 2 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1078.6499 E7ESC6;Q9UIA9 E7ESC6 419 427 XPO7 Exportin-7 yes no 2 0.057945 65.246 By MS/MS By matching 1 1 1.2253 1.2437 22.246 2 Median 1.099 1.0627 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3661 1.4556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5821800 2566700 3255100 4842800 2141700 2701100 0 0 0 979070 425030 554050 0 0 0 0 0 0 0 0 0 19587 885 20421 102252;102253 103922 103922 0 LESVSFNQTGPYNDPPGNAFNAPSQGLQFQR LGLQGTRFDNHPSQRLESVSFNQTGPYNDP GNAFNAPSQGLQFQRHEQIFDSPQGPNFNG R L E Q R H 2 1 4 1 0 4 1 3 0 0 2 0 0 3 4 3 1 0 1 1 0 0 31 0 3379.5858 O94913 O94913 1124 1154 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes yes 3 0.07547 4.8088 By MS/MS 1 0.66976 0.74391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66976 0.74391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2337500 1215500 1122100 0 0 0 0 0 0 2337500 1215500 1122100 0 0 0 0 0 0 0 0 0 19588 1736 20422 102254 103923 103923 1 LETAVNLAWTAGNSNTR GTEFGGSIYQKVNKKLETAVNLAWTAGNSN TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K L E T R F 3 1 3 0 0 0 1 1 0 0 2 0 0 0 0 1 3 1 0 1 0 0 17 0 1816.9068 P21796 P21796 202 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 6.1353E-13 106.01 By MS/MS 1 1.1175 1.0437 NaN 1 Median 1.1175 1.0437 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8375100 4335100 4040000 8375100 4335100 4040000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19589 2092 20423 102255 103924 103924 1 LETDPAIVINR LVKDWAPKAFIISFKLETDPAIVINRARKA ISFKLETDPAIVINRARKALEIYQHQVVVA K L E N R A 1 1 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1239.6823 Q9HAB8 Q9HAB8 232 242 PPCS Phosphopantothenate--cysteine ligase yes yes 2 0.00015191 83.005 By MS/MS By MS/MS 1 1 0.92392 0.81631 15.387 2 Median 0.78422 0.73215 NaN 1 0 Median 1.0885 0.91014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11255000 5691300 5563500 7830000 4040600 3789400 3424800 1650700 1774100 0 0 0 0 0 0 0 0 0 0 0 0 19590 4007 20424 102256;102257 103925;103926;103927;103928 103926 4 LETDPAIVINRAR LVKDWAPKAFIISFKLETDPAIVINRARKA FKLETDPAIVINRARKALEIYQHQVVVANI K L E A R K 2 2 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 13 1 1466.8205 Q9HAB8 Q9HAB8 232 244 PPCS Phosphopantothenate--cysteine ligase yes yes 3 0.030668 21.251 By MS/MS 1 1.5305 1.386 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5305 1.386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1279500 528710 750740 0 0 0 0 0 0 0 0 0 1279500 528710 750740 0 0 0 0 0 0 19591 4007 20425 102258 103929 103929 1 LETELGQPAER AQPDAISRLLEELQRLETELGQPAERWKDT ELQRLETELGQPAERWKDTWDRVKAAQRLE R L E E R W 1 1 0 0 0 1 3 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 11 0 1241.6252 O95248;H0Y5W8 O95248 1661 1671 SBF1 Myotubularin-related protein 5 yes no 2 0.03457 47.187 By MS/MS 1 0.71723 0.60205 NaN 1 Median NaN NaN NaN 0 0 Median 0.71723 0.60205 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1086500 664000 422540 0 0 0 1086500 664000 422540 0 0 0 0 0 0 0 0 0 0 0 0 19592 1758 20426 102259 103930 103930 1 LETELGQPAERWK AQPDAISRLLEELQRLETELGQPAERWKDT QRLETELGQPAERWKDTWDRVKAAQRLEGR R L E W K D 1 1 0 0 0 1 3 1 0 0 2 1 0 0 1 0 1 1 0 0 0 0 13 1 1555.7995 O95248;H0Y5W8 O95248 1661 1673 SBF1 Myotubularin-related protein 5 yes no 3 0.056533 14.687 By MS/MS By matching 3 2 0.84598 0.79386 17.091 5 Median NaN NaN NaN 0 0 Median 0.93065 0.84457 21.013 3 0 Median NaN NaN NaN 0 0 Median 0.76379 0.72696 12.449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 215510000 118930000 96578000 0 0 0 210290000 115340000 94954000 0 0 0 5216200 3592600 1623500 0 0 0 0 0 0 19593 1758 20427 102260;102261;102262;102263;102264 103931 103931 1 LETFIQEHLR HASNIYKVEGGCITKLETFIQEHLRVIGAV GCITKLETFIQEHLRVIGAVGIGI______ K L E L R V 0 1 0 0 0 1 2 0 1 1 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1284.6826 K4DIA7;E9PMR4;P48509 K4DIA7 212 221 CD151 Tetraspanin;CD151 antigen yes no 3 0.0018826 48.44 By matching By MS/MS 1 3 1.1715 1.0539 23.626 4 Median 1.0394 1.037 NaN 1 0 Median 1.3204 1.0711 28.187 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14588000 6367700 8220700 2258300 984620 1273600 12330000 5383100 6947100 0 0 0 0 0 0 0 0 0 0 0 0 19594 970 20428 102265;102266;102267;102268 103932;103933;103934 103932 3 LETGAPRPPATVTNAVSWR DSKILQEYITQEGHKLETGAPRPPATVTNA APRPPATVTNAVSWRSEGIKYRKNEVFLDV K L E W R S 3 2 1 0 0 0 1 1 0 0 1 0 0 0 3 1 3 1 0 2 0 0 19 1 2022.0647 E7ENJ6;Q9BXS5;K7EJL1;A0A087WZX7 E7ENJ6 142 160 AP1M1 AP-1 complex subunit mu-1 yes no 3 6.6175E-20 157.12 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.58546 0.61219 17.002 4 Median 0.57607 0.58175 NaN 1 0 Median 0.69913 0.6529 NaN 1 0 Median 0.595 0.64422 NaN 1 0 Median 0.48495 0.45235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35871000 23089000 12782000 12126000 7741100 4384500 708170 362790 345380 19043000 12471000 6571300 3994200 2513500 1480800 0 0 0 0 0 0 19595 864 20429 102269;102270;102271;102272 103935;103936 103936 2 LETGQFLTFR ANPGIVTCLENHPHKLETGQFLTFREINGM NHPHKLETGQFLTFREINGMTGLNGSIQQI K L E F R E 0 1 0 0 0 1 1 1 0 0 2 0 0 2 0 0 2 0 0 0 0 0 10 0 1210.6346 A0AVT1 A0AVT1 239 248 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2 0.00037009 81.594 By MS/MS 1 1.307 1.2701 NaN 1 Median 1.307 1.2701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3321300 1446600 1874700 3321300 1446600 1874700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19596 489 20430 102273 103937;103938 103937 2 LETHMTPEMFR PGFCFHLCSRARFERLETHMTPEMFRTPLH RFERLETHMTPEMFRTPLHEIALSIKLLRL R L E F R T 0 1 0 0 0 0 2 0 1 0 1 0 2 1 1 0 2 0 0 0 0 0 11 0 1390.6373 Q08211 Q08211 785 795 DHX9 ATP-dependent RNA helicase A yes yes 2;3 2.851E-30 210.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 11 4 14 8 1.0554 1.0794 11.461 46 Median 1.2167 1.189 12.202 6 1 Median 1.3578 1.1228 1.8655 4 0 Linear 0.91883 1.0152 8.8765 10 0 Median 1.2768 1.0856 4.5369 4 0 Median 1.0064 1.0153 10.641 14 0 Median 1.3963 1.1618 13.16 8 0 Median 547090000 263620000 283460000 42167000 19293000 22874000 18106000 7954100 10152000 263060000 130080000 132970000 14377000 6244000 8133200 198970000 95781000 103190000 10411000 4264600 6146900 19597 2736 20431;20432 102274;102275;102276;102277;102278;102279;102280;102281;102282;102283;102284;102285;102286;102287;102288;102289;102290;102291;102292;102293;102294;102295;102296;102297;102298;102299;102300;102301;102302;102303;102304;102305;102306;102307;102308;102309;102310;102311;102312;102313;102314;102315;102316;102317;102318;102319;102320 103939;103940;103941;103942;103943;103944;103945;103946;103947;103948;103949;103950;103951;103952;103953;103954;103955;103956;103957;103958;103959;103960;103961;103962;103963;103964;103965;103966;103967;103968;103969;103970;103971;103972 103945 1420;1421 34 LETLGIGQR LGAQRPRNAQLDCSKLETLGIGQRTPFRIG QLDCSKLETLGIGQRTPFRIGIKESLWPFL K L E Q R T 0 1 0 0 0 1 1 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 985.55564 Q9NZL9 Q9NZL9 300 308 MAT2B Methionine adenosyltransferase 2 subunit beta yes yes 2 0.00098836 86.794 By MS/MS By MS/MS 1 2 1.3562 1.3198 6.9179 3 Median 1.3314 1.3198 NaN 1 0 Median 1.4677 1.2626 9.0887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13925000 6173600 7750900 5365800 2568400 2797400 8558700 3605200 4953500 0 0 0 0 0 0 0 0 0 0 0 0 19598 4191 20433 102321;102322;102323 103973;103974;103975 103974 3 LETLGSASTSTPGR RDLEMSKKVRRSYSRLETLGSASTSTPGRR RLETLGSASTSTPGRRSCFGFEGLLGAEDL R L E G R R 1 1 0 0 0 0 1 2 0 0 2 0 0 0 1 3 3 0 0 0 0 0 14 0 1375.6943 Q96FF9;B5MBX0 Q96FF9 149 162 CDCA5 Sororin yes no 2 1.2687E-07 114.83 By MS/MS By matching By matching 1 1 1 0.95078 0.77051 6.6425 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99705 0.83173 NaN 1 0 Median 0.74265 0.72864 NaN 1 0 Median 0.95078 0.77051 NaN 1 0 Median 4526900 2463100 2063800 0 0 0 0 0 0 0 0 0 1939300 1009700 929550 1825100 1081500 743550 762530 371830 390700 19599 616 20434 102324;102325;102326 103976;103977 103976 2 LETLTNQFSDSK ELSRKDTELLALQTKLETLTNQFSDSKQHI QTKLETLTNQFSDSKQHIEVLKESLTAKEQ K L E S K Q 0 0 1 1 0 1 1 0 0 0 2 1 0 1 0 2 2 0 0 0 0 0 12 0 1381.6725 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 489 500 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 4.7077E-06 146.11 By matching By MS/MS By MS/MS 1 1 1 1.1546 1.0027 4.569 3 Median 1.0311 1.0027 NaN 1 0 Median 1.238 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1546 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15437000 7152700 8284000 6557000 3205800 3351200 2371800 1015100 1356700 0 0 0 6507900 2931800 3576100 0 0 0 0 0 0 19600 3311 20435 102327;102328;102329 103978;103979;103980 103980 3 LETNEFQQLQSK SEKFAKVENQYQLLKLETNEFQQLQSKISL LLKLETNEFQQLQSKISLISEKWQKSEAIM K L E S K I 0 0 1 0 0 3 2 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 0 1463.7256 Q70UQ0 Q70UQ0 81 92 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 1.7127E-78 219.03 By MS/MS By MS/MS By MS/MS 1 1 2 1.092 1.0389 5.1409 4 Median 1.104 1.0212 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0238 1.0569 NaN 1 0 Median 1.1829 1.0327 8.5449 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56559000 26956000 29602000 13709000 6117600 7591400 0 0 0 23859000 11173000 12686000 18991000 9665400 9325500 0 0 0 0 0 0 19601 3208 20436 102330;102331;102332;102333 103981;103982;103983;103984;103985 103984 5 LETQVWEAHNPLTDKQIDQFLVVAR DLLKEGEEDGRDQSRLETQVWEAHNPLTDK PLTDKQIDQFLVVARSVGTFARALDCSSSV R L E A R S 2 1 1 2 0 3 2 0 1 1 3 1 0 1 1 0 2 1 0 3 0 0 25 1 2949.5349 E7ESY4;Q13330 E7ESY4 194 218 MTA1 Metastasis-associated protein MTA1 yes no 4 0.03183 12.314 By MS/MS 1 0.66561 0.73924 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66561 0.73924 NaN 1 0 Median NaN NaN NaN 0 0 Median 1264200 704830 559410 0 0 0 0 0 0 0 0 0 0 0 0 1264200 704830 559410 0 0 0 19602 888 20437 102334 103986;103987 103986 2 LETSVQGGGGLAMNDR SKPLPPLTAKSAGGRLETSVQGGGGLAMND ETSVQGGGGLAMNDRAAAAGSLDRSRNLEE R L E D R A 1 1 1 1 0 1 1 4 0 0 2 0 1 0 0 1 1 0 0 1 0 0 16 0 1603.7624 Q9Y2U8 Q9Y2U8 306 321 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 9.9035E-09 132.79 By MS/MS By MS/MS 1 5 1.1727 1.0024 9.1825 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88389 0.93774 NaN 1 0 Median 1.1929 1.0241 9.515 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32566000 15196000 17370000 0 0 0 0 0 0 13037000 6217600 6819700 19529000 8978000 10551000 0 0 0 0 0 0 19603 4392 20438;20439 102335;102336;102337;102338;102339;102340 103988;103989;103990;103991;103992;103993 103988 1958 6 LETVALPLQGLEDLAADR VLIGEQYLKDELKKRLETVALPLQGLEDLA VALPLQGLEDLAADRINRLQAALASTQQFQ R L E D R I 3 1 0 2 0 1 2 1 0 0 5 0 0 0 1 0 1 0 0 1 0 0 18 0 1923.0313 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4767 4784 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.048509 20.663 By MS/MS By matching 1 1 0.90597 0.83958 12.591 2 Median 0.76321 0.76806 NaN 1 0 Median 1.0754 0.91776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2534500 1341600 1192900 1496800 846680 650110 1037700 494950 542750 0 0 0 0 0 0 0 0 0 0 0 0 19604 1220 20440 102341;102342 103994 103994 1 LETVFVPPEKHEK KLLLENDSLSKDVSRLETVFVPPEKHEKEI SRLETVFVPPEKHEKEIIALKSNIVELKKQ R L E E K E 0 0 0 0 0 0 3 0 1 0 1 2 0 1 2 0 1 0 0 2 0 0 13 1 1551.8297 F5H2B9;H0YNH8;Q9BZF9 F5H2B9 690 702 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.053314 25.178 By MS/MS 1 0.56063 0.64132 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56063 0.64132 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1456400 1043500 412910 0 0 0 0 0 0 1456400 1043500 412910 0 0 0 0 0 0 0 0 0 19605 1026 20441 102343 103995 103995 1 LETVGSIFSR ______________________________ MAGSRLETVGSIFSRTRDLVRAGVLKEKPL R L E S R T 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 2 1 0 0 1 0 0 10 0 1107.5924 Q9Y3D9;J3QLR8 Q9Y3D9 6 15 MRPS23 28S ribosomal protein S23, mitochondrial yes no 2 0.00034968 84.213 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1.2141 1.1135 11.552 6 Median 1.0793 1.026 NaN 1 0 Median 1.4614 1.247 1.1612 2 0 Median 1.0136 0.97402 NaN 1 0 Median 1.2191 1.0095 NaN 1 0 Median 1.2092 1.2086 NaN 1 0 Median NaN NaN NaN 0 0 Median 58652000 27681000 30971000 36044000 17388000 18656000 5825700 2234400 3591300 8470500 4062300 4408200 2219000 1024400 1194600 6092700 2971700 3121000 0 0 0 19606 4424 20442 102344;102345;102346;102347;102348;102349 103996;103997;103998;103999;104000 103996 5 LETYENAR ECCPTSVELWLALARLETYENARKVLNKAR LWLALARLETYENARKVLNKARENIPTDRH R L E A R K 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 8 0 994.47197 O94906 O94906 443 450 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.011256 75.854 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0234 0.98623 8.2323 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92362 0.98623 NaN 1 0 Median 1.0345 0.88277 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0234 0.83969 NaN 1 0 Median 3815800 1800300 2015500 0 0 0 0 0 0 2098600 1070900 1027700 995040 410960 584080 0 0 0 722150 318420 403730 19607 1735 20443 102350;102351;102352;102353 104001;104002;104003;104004 104001 4 LEVAPISDIIAIK ASAFGKNLLPRVAAKLEVAPISDIIAIKSP AKLEVAPISDIIAIKSPDTFVRTIYAGNAL K L E I K S 2 0 0 1 0 0 1 0 0 4 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1380.8228 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6;H0YKF0 P13804 127 139 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 4.4454E-07 138.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 1 2 2 3 1.2612 1.0521 30.547 19 Median 0.82659 0.7797 26.424 5 0 Median 1.2113 1.0137 10.079 6 0 Median 0.80208 0.76757 NaN 1 0 Median 1.4572 1.2152 16.657 2 0 Median 1.51 1.5205 4.3786 2 0 Median 1.5478 1.2839 7.7771 3 0 Median 495680000 222870000 272810000 67793000 36141000 31653000 395350000 173210000 222140000 4065200 2219800 1845500 1824600 759420 1065200 1870800 773150 1097600 24777000 9765900 15011000 19608 1996 20444 102354;102355;102356;102357;102358;102359;102360;102361;102362;102363;102364;102365;102366;102367;102368;102369;102370;102371;102372 104005;104006;104007;104008;104009;104010;104011;104012;104013;104014;104015;104016;104017;104018;104019;104020;104021 104007 17 LEVDYSIGR YADVLRGSLDQRNQRLEVDYSIGRDIQRQD DQRNQRLEVDYSIGRDIQRQDLSAIARTLQ R L E G R D 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1050.5346 Q9UBW8;F5H7C6;F5GYF7;F5H248 Q9UBW8 152 160 COPS7A COP9 signalosome complex subunit 7a yes no 2 0.014224 58.981 By MS/MS 1 2.8724 2.4289 NaN 1 Median NaN NaN NaN 0 0 Median 2.8724 2.4289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6803900 1892400 4911500 0 0 0 6803900 1892400 4911500 0 0 0 0 0 0 0 0 0 0 0 0 19609 4253 20445 102373 104022 104022 1 LEVEANNAFDQYR PPLEDGAMPSARLRKLEVEANNAFDQYRDL RKLEVEANNAFDQYRDLYFEGGVSSVYLWD K L E Y R D 2 1 2 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 13 0 1567.7267 B1AK87;B1AK88;P47756;B1AK85 B1AK87 84 96 CAPZB F-actin-capping protein subunit beta yes no 2 3.5351E-22 197.06 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 0.9699 0.90719 31.025 9 Median 1.0357 0.97368 10.003 2 0 Median 1.1031 0.91938 36.734 3 0 Median 0.66779 0.64377 46.361 2 0 Median 1.0503 0.8684 29.468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47811000 23551000 24260000 16977000 7829700 9147700 7067200 3248800 3818400 18888000 10333000 8554900 4878400 2139500 2738800 0 0 0 0 0 0 19610 566 20446 102374;102375;102376;102377;102378;102379;102380;102381;102382 104023;104024;104025;104026;104027;104028;104029;104030;104031 104025 9 LEVEINK L E N K 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 843.47018 REV__A0A0A0MRA3 yes no 2 0.017853 64.523 By MS/MS 2 0.90781 0.98288 0 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90781 0.98288 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6169600 2864600 3305000 0 0 0 0 0 0 6169600 2864600 3305000 0 0 0 0 0 0 0 0 0 + 19611 4507 20447 102383;102384 104032;104033 104032 2 LEVGTETIIDK NLMERNNLSYDCIGRLEVGTETIIDKSKSV CIGRLEVGTETIIDKSKSVKTNLMQLFEES R L E D K S 0 0 0 1 0 0 2 1 0 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1216.6551 Q01581;P54868 Q01581 90 100 HMGCS1;HMGCS2 Hydroxymethylglutaryl-CoA synthase, cytoplasmic;Hydroxymethylglutaryl-CoA synthase, mitochondrial yes no 2 0.03568 42.743 By matching By MS/MS By MS/MS 1 2 1 1.2016 1.0273 13.754 4 Median 0.95426 0.88266 NaN 1 0 Median 1.2016 1.0273 0.44091 2 0 Median 1.2507 1.2352 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46638000 22061000 24577000 15678000 8006300 7671600 23493000 10779000 12714000 7466400 3275300 4191100 0 0 0 0 0 0 0 0 0 19612 2687 20448 102385;102386;102387;102388 104034;104035 104035 2 LEVLDSTK SHTDIKVPDFSEYRRLEVLDSTKSSRESSE DFSEYRRLEVLDSTKSSRESSEARKGFSYL R L E T K S 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 8 0 903.49131 P47985;P0C7P4 P47985 94 101 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 2 0.0035864 87.181 By MS/MS 1 2.2171 2.0608 NaN 1 Median 2.2171 2.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6106900 2367500 3739400 6106900 2367500 3739400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19613 2357 20449 102389 104036 104036 1 LEVNLQAMK ELEDELQATEDAKLRLEVNLQAMKAQFERD EDAKLRLEVNLQAMKAQFERDLQGRDEQSE R L E M K A 1 0 1 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1044.5638 P35579 P35579 1558 1566 MYH9 Myosin-9 yes yes 2 0.00046424 124.08 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 1 1 1 1.1286 1.1816 41.786 9 Median 1.6824 1.5797 52.219 3 1 Median 1.0839 0.95948 0.35686 2 0 Median 1.0122 1.1174 NaN 1 0 Median 1.429 1.301 NaN 1 0 Median 1.1286 1.1816 NaN 1 0 Median 0.9212 0.78922 NaN 1 0 Median 208900000 89853000 119050000 101910000 40192000 61715000 78893000 36542000 42351000 10799000 5529100 5269700 1204800 511400 693420 12217000 5348300 6868900 3880300 1731400 2148900 19614 2244 20450;20451 102390;102391;102392;102393;102394;102395;102396;102397;102398 104037;104038;104039;104040;104041;104042;104043;104044;104045;104046;104047;104048;104049;104050 104037 991 14 LEVNMQAMK ELEDELQATEDAKLRLEVNMQAMKAQFERD EDAKLRLEVNMQAMKAQFERDLQTRDEQNE R L E M K A 1 0 1 0 0 1 1 0 0 0 1 1 2 0 0 0 0 0 0 1 0 0 9 0 1062.5202 P35580 P35580 1565 1573 MYH10 Myosin-10 yes yes 2 0.0004949 100.19 By MS/MS By MS/MS By matching 1 2 1 1.1087 1.0317 15.68 4 Median 1.1369 1.0988 NaN 1 1 Median 1.0424 0.92247 23.1 2 1 Median NaN NaN NaN 0 0 Median 1.0811 0.98002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29789000 13239000 16550000 12350000 5137500 7212300 16829000 7815300 9014100 0 0 0 609590 286350 323240 0 0 0 0 0 0 19615 2245 20452;20453 102399;102400;102401;102402 104051;104052;104053 104051 1004 3 LEVPDMNIR IKGDVDVSVPEVEGKLEVPDMNIRGPKVDV PEVEGKLEVPDMNIRGPKVDVNAPDVQAPD K L E I R G 0 1 1 1 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 9 0 1085.5539 Q09666 Q09666 2482 2490 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0008527 94.302 By matching By matching By MS/MS By MS/MS By matching 1 1 2 4 1 1.0049 0.96573 7.7433 9 Median 0.96889 0.94354 NaN 1 0 Median 1.0775 1.039 NaN 1 0 Median 0.93979 0.99588 4.1366 2 0 Median 1.0547 0.92364 11.412 4 0 Median 0.9467 0.96573 NaN 1 0 Median NaN NaN NaN 0 0 Median 96272000 45962000 50310000 17763000 8396800 9366600 13959000 6431300 7528100 27319000 13335000 13984000 34931000 16601000 18330000 2298500 1198000 1100500 0 0 0 19616 2749 20454;20455 102403;102404;102405;102406;102407;102408;102409;102410;102411 104054;104055;104056;104057;104058;104059;104060;104061;104062 104058 1458 9 LEVPVEMNPEGYMTSR GNPAPKITWYRNGQRLEVPVEMNPEGYMTS EVPVEMNPEGYMTSRTVREASGLLSLTSTL R L E S R T 0 1 1 0 0 0 3 1 0 0 1 0 2 0 2 1 1 0 1 2 0 0 16 0 1850.8543 P50895;A0A087WXM8;K7ENU8 P50895 192 207 BCAM Basal cell adhesion molecule yes no 2 0.0060531 32.062 By MS/MS 1 0.66385 0.65851 NaN 1 Median 0.66385 0.65851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1439100 604550 834500 1439100 604550 834500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19617 68 20456 102412 104063 104063 1 LEVQAEEER VATERQKRRQEIEQKLEVQAEEERKQVENE QEIEQKLEVQAEEERKQVENERRELFEERR K L E E R K 1 1 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1101.5302 Q9H307 Q9H307 177 185 PNN Pinin yes yes 2 4.7654E-07 163.99 By matching By MS/MS By MS/MS By MS/MS 1 2 2 4 1.1514 1.0919 48.895 9 Median NaN NaN NaN 0 0 Median 1.1514 0.99904 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.979 0.82964 11.667 2 0 Median 1.6156 1.6473 58.156 2 0 Median 1.4736 1.2025 56.337 4 1 Median 53793000 22561000 31232000 0 0 0 1300700 615030 685720 0 0 0 1140400 632210 508220 28602000 11675000 16927000 22750000 9638300 13112000 19618 3950 20457 102413;102414;102415;102416;102417;102418;102419;102420;102421 104064;104065;104066;104067;104068;104069;104070;104071;104072;104073;104074;104075 104067 12 LEVQAEEERK VATERQKRRQEIEQKLEVQAEEERKQVENE EIEQKLEVQAEEERKQVENERRELFEERRA K L E R K Q 1 1 0 0 0 1 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1229.6252 Q9H307 Q9H307 177 186 PNN Pinin yes yes 3 0.0018191 47.559 By MS/MS By MS/MS 2 1 1.1272 1.0171 13.799 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0024 1.1224 17.78 2 0 Median 1.1576 1.0171 NaN 1 0 Median 2661600 1265300 1396300 0 0 0 0 0 0 0 0 0 0 0 0 2057000 1020100 1036900 604670 245260 359400 19619 3950 20458 102422;102423;102424 104076;104077;104078 104076 3 LEVQATDR SKKKAVQRLEEQLMKLEVQATDREENKQIA LEEQLMKLEVQATDREENKQIALGTSKLNY K L E D R E 1 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 930.47706 P11387 P11387 701 708 TOP1 DNA topoisomerase 1 yes yes 2 0.013918 71.501 By MS/MS 1 1.0176 1.0873 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0176 1.0873 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1984200 1096900 887250 0 0 0 0 0 0 1984200 1096900 887250 0 0 0 0 0 0 0 0 0 19620 1962 20459 102425 104079 104079 1 LEVQATDREENK SKKKAVQRLEEQLMKLEVQATDREENKQIA LMKLEVQATDREENKQIALGTSKLNYLDPR K L E N K Q 1 1 1 1 0 1 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1430.7001 P11387 P11387 701 712 TOP1 DNA topoisomerase 1 yes yes 2;3 0.00014761 91.584 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 11 6 2 7 1.1997 1.1943 17.735 28 Median 1.9999 2.0644 NaN 1 0 Median 1.0892 1.0885 NaN 1 1 Median 0.99142 1.1158 13.893 11 0 Median 1.3211 1.2386 12.171 6 0 Median 1.0185 1.1396 23.278 2 0 Median 1.3671 1.2107 3.7652 7 0 Median 118580000 52781000 65801000 320810 104780 216030 2415400 1227200 1188200 63635000 29727000 33908000 41255000 17124000 24131000 2329600 1055100 1274500 8625600 3542600 5083000 19621 1962 20460 102426;102427;102428;102429;102430;102431;102432;102433;102434;102435;102436;102437;102438;102439;102440;102441;102442;102443;102444;102445;102446;102447;102448;102449;102450;102451;102452;102453 104080;104081;104082;104083;104084;104085;104086;104087;104088;104089;104090;104091;104092;104093;104094;104095;104096;104097;104098;104099;104100;104101;104102;104103;104104 104086 25 LEVQATDREENKQIALGTSK SKKKAVQRLEEQLMKLEVQATDREENKQIA TDREENKQIALGTSKLNYLDPRITVAWCKK K L E S K L 2 1 1 1 0 2 3 1 0 1 2 2 0 0 0 1 2 0 0 1 0 0 20 2 2229.1601 P11387 P11387 701 720 TOP1 DNA topoisomerase 1 yes yes 3;4 6.5235E-19 141.22 By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 2 4 1.1975 1.2446 30.862 11 Median 1.5992 1.8178 8.6435 2 0 Median NaN NaN NaN 0 0 Median 0.97984 1.2207 2.7502 2 0 Median 0.98284 0.95428 NaN 1 0 Median 1.0716 1.2628 19.84 2 0 Median 1.2605 1.2932 42.269 4 0 Median 193770000 91308000 102460000 7079600 2665200 4414400 0 0 0 112710000 55023000 57684000 1374200 472020 902230 49287000 22763000 26523000 23318000 10384000 12934000 19622 1962 20461 102454;102455;102456;102457;102458;102459;102460;102461;102462;102463;102464 104105;104106;104107;104108;104109;104110;104111;104112;104113;104114;104115;104116 104116 12 LEVSMVKPTPGLTPR KRSSRANTVTPAVGRLEVSMVKPTPGLTPR LEVSMVKPTPGLTPRFDSRVFKTPGLRTPA R L E P R F 0 1 0 0 0 0 1 1 0 0 2 1 1 0 3 1 2 0 0 2 0 0 15 1 1623.9018 Q53HL2 Q53HL2 177 191 CDCA8 Borealin yes yes 2;3 0.00025959 61.344 By MS/MS By matching 2 1 0.71221 0.77682 26.475 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80016 0.86957 15.949 2 0 Median 0.6427 0.57428 NaN 1 0 Median 22071000 12614000 9456600 0 0 0 0 0 0 0 0 0 0 0 0 18117000 10362000 7755100 3953700 2252200 1701500 19623 3033 20462 102465;102466;102467 104117;104118;104119 104118 3 LEVSVDSDQKK HILLDCGEDNVCKPKLEVSVDSDQKKIYIG CKPKLEVSVDSDQKKIYIGDDNPLTLIVKA K L E K K I 0 0 0 2 0 1 1 0 0 0 1 2 0 0 0 2 0 0 0 2 0 0 11 1 1246.6405 P06756 P06756 636 646 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain yes yes 2 0.00016256 89.247 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19624 1878 20463 102468 104120 104120 1 LEVSYQGLDIENQR KGLELLKASFKKTERLEVSYQGLDIENQRL RLEVSYQGLDIENQRLQKTLENSNKKIQQL R L E Q R L 0 1 1 1 0 2 2 1 0 1 2 0 0 0 0 1 0 0 1 1 0 0 14 0 1662.8213 Q3V6T2;A0A2R8YGU1;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8Y820;A0A2R8YCU9;A0A2R8YG52;A0A087WXD9 Q3V6T2 754 767 CCDC88A Girdin yes no 2 6.2228E-06 124.1 By MS/MS By matching 1 1 0.90901 0.84312 19.317 2 Median 0.75455 0.73547 NaN 1 0 Median 1.0951 0.96652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3978800 1811600 2167200 3519500 1601400 1918100 459230 210190 249040 0 0 0 0 0 0 0 0 0 0 0 0 19625 367 20464 102469;102470 104121 104121 1 LEVTVQALK ELEDELTAAEDAKLRLEVTVQALKTQHERD EDAKLRLEVTVQALKTQHERDLQGRDEAGE R L E L K T 1 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 999.59645 Q7Z406;A1L2Z2 Q7Z406 1582 1590 MYH14 Myosin-14 yes no 2 0.0073226 51.854 By MS/MS 1 1.077 0.94632 NaN 1 Median NaN NaN NaN 0 0 Median 1.077 0.94632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1528300 715290 812980 0 0 0 1528300 715290 812980 0 0 0 0 0 0 0 0 0 0 0 0 19626 3242 20465 102471 104122;104123 104122 2 LEWVQDNIR RSSAPTARVFMKSVKLEWVQDNIRAAQDLC FMKSVKLEWVQDNIRAAQDLCEEALRHYED K L E I R A 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 9 0 1171.5986 O94906 O94906 684 692 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00011364 145.63 By MS/MS By MS/MS By MS/MS 1 2 1 1.1735 0.99756 26.526 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93954 0.99543 NaN 1 0 Median 1.1735 0.99756 NaN 1 1 Median 1.4931 1.5776 NaN 1 0 Median NaN NaN NaN 0 0 Median 25274000 12265000 13009000 0 0 0 0 0 0 18222000 9132100 9090100 3646600 1639800 2006800 3405200 1492900 1912200 0 0 0 19627 1735 20466 102472;102473;102474;102475 104124;104125;104126;104127;104128 104125 5 LEYCEALAMLR QFPCEPFKFLEPTLRLEYCEALAMLREAGV PTLRLEYCEALAMLREAGVEMGDEDDLSTP R L E L R E 2 1 0 0 1 0 2 0 0 0 3 0 1 0 0 0 0 0 1 0 0 0 11 0 1367.6577 P14868;H7BZ35 P14868 346 356 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2 0.00015996 90.629 By matching By MS/MS By matching By matching By matching By matching 1 2 7 2 3 2 1.1141 1.061 16.003 17 Median 1.1324 1.1357 NaN 1 0 Median 1.0732 0.9405 15.651 2 0 Median 1.1986 1.2102 8.0152 7 0 Median 1.0135 0.89353 2.0472 2 0 Median 0.98818 1.0141 11.235 3 0 Median 1.1963 0.98566 10.419 2 0 Median 136660000 64564000 72100000 15131000 6849300 8282100 32845000 16794000 16051000 51513000 23548000 27964000 2565800 1278400 1287400 10307000 5474200 4832400 24302000 10620000 13683000 19628 2012 20467 102476;102477;102478;102479;102480;102481;102482;102483;102484;102485;102486;102487;102488;102489;102490;102491;102492 104129;104130 104129 2 LEYDAYR MEDTLMTVKQYEAARLEYDAYRTDLEELSL VKQYEAARLEYDAYRTDLEELSLGPRDAGT R L E Y R T 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 7 0 928.42905 A0A087X1E4;P53365 A0A087X1E4 266 272 ARFIP2 Arfaptin-2 yes no 2 0.022734 57.559 By MS/MS 1 1.1167 0.9549 NaN 1 Median NaN NaN NaN 0 0 Median 1.1167 0.9549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1858400 745750 1112700 0 0 0 1858400 745750 1112700 0 0 0 0 0 0 0 0 0 0 0 0 19629 119 20468 102493 104131;104132 104131 2 LEYGDNAEK DRQEAIDWLLGLAVRLEYGDNAEKYKDLVP LGLAVRLEYGDNAEKYKDLVPDNSKTADNA R L E E K Y 1 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1037.4666 Q9Y224;H0YJB9;G3V4C6 Q9Y224 90 98 C14orf166 UPF0568 protein C14orf166 yes no 2 0.018328 40.882 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1204 1.0002 15.531 4 Median 1.0431 1.0056 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9591 0.89885 NaN 1 0 Median 1.2033 0.9948 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5288 1.2947 NaN 1 0 Median 13971000 6610800 7360500 1686500 820860 865670 0 0 0 10757000 5144800 5612700 1340200 562710 777450 0 0 0 187170 82430 104740 19630 4367 20469 102494;102495;102496;102497 104133;104134;104135;104136;104137 104135 5 LEYGGLGR MANEAYPCPCDIGHRLEYGGLGREVQVEHI PCDIGHRLEYGGLGREVQVEHIKAYVTKSP R L E G R E 0 1 0 0 0 0 1 3 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 863.45012 Q96DG6 Q96DG6 16 23 CMBL Carboxymethylenebutenolidase homolog yes yes 2 0.0016883 143.37 By MS/MS By MS/MS By MS/MS 2 1 1 1.0628 1.0042 14.411 4 Median 1.0628 1.0042 5.2772 2 0 Median 1.417 1.198 NaN 1 0 Median 0.88493 0.84851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38797000 19132000 19665000 28855000 14708000 14147000 4418900 1746100 2672800 5522800 2677900 2844900 0 0 0 0 0 0 0 0 0 19631 3626 20470 102498;102499;102500;102501 104138;104139;104140 104138 3 LEYHNFLTSNNLQSYLNSVQR PNISGFTDISPEELRLEYHNFLTSNNLQSY LTSNNLQSYLNSVQRLINQWRNRVNELKSL R L E Q R L 0 1 4 0 0 2 1 0 1 0 4 0 0 1 0 3 1 0 2 1 0 0 21 0 2539.2456 O15504;C9JYA1 O15504 160 180 NUPL2 Nucleoporin-like protein 2 yes no 3 4.5299E-07 48.229 By MS/MS By matching By MS/MS 2 1 2 1.0283 1.0189 10.741 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92894 0.9605 8.3522 2 0 Median 1.2565 1.0985 NaN 1 0 Median 0.92378 0.94585 15.104 2 0 Median NaN NaN NaN 0 0 Median 15268000 7276100 7992400 0 0 0 0 0 0 9860700 4709600 5151100 460600 196290 264310 4947200 2370200 2577000 0 0 0 19632 728 20471 102502;102503;102504;102505;102506 104141;104142;104143 104141 3 LEYLQIPPVSR ______________________________ QSLRLEYLQIPPVSRAYTTACVLTTAAVQL R L E S R A 0 1 0 0 0 1 1 0 0 1 2 0 0 0 2 1 0 0 1 1 0 0 11 0 1313.7343 I3L3R8;I3L4W7;K7EQE8;I3L1W3;I3L1S8;I3L0R8;Q9GZP9 I3L3R8 8 18 DERL2 Derlin-2 yes no 2 0.0020665 55.549 By MS/MS By matching 1 1 1.6484 1.5767 46.223 2 Median NaN NaN NaN 0 0 Median 1.3457 1.1371 NaN 1 0 Median 2.0193 2.1863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2649100 692480 1956700 0 0 0 1495200 475440 1019700 1154000 217040 936910 0 0 0 0 0 0 0 0 0 19633 1273 20472 102507;102508 104144 104144 1 LEYNYNSHNVYIMADK KGIDFKEDGNILGHKLEYNYNSHNVYIMAD EYNYNSHNVYIMADKQKNGIKVNFKIRHNI K L E D K Q 1 0 3 1 0 0 1 0 1 1 1 1 1 0 0 1 0 0 3 1 0 0 16 0 1972.8989 CON__Q9U6Y5 CON__Q9U6Y5 141 156 yes yes 2;3 8.2167E-15 159.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 25 17 16 11 9 6 1.2857 1.2177 74.026 83 Median 1.1241 1.0248 15.215 25 2 Median 1.1879 1.011 32.145 17 1 Median 1.3204 1.2911 40.388 16 3 Median 1.7968 1.6163 67.108 11 0 Median 8.6562 8.9271 30.542 8 4 Median 4.5213 3.697 15.328 6 0 Median 7429200000 3156500000 4272700000 4528600000 2045900000 2482700000 1058100000 461640000 596410000 1294300000 525580000 768710000 293080000 99355000 193720000 207070000 15800000 191270000 48162000 8304200 39858000 + 19634 795 20473;20474 102509;102510;102511;102512;102513;102514;102515;102516;102517;102518;102519;102520;102521;102522;102523;102524;102525;102526;102527;102528;102529;102530;102531;102532;102533;102534;102535;102536;102537;102538;102539;102540;102541;102542;102543;102544;102545;102546;102547;102548;102549;102550;102551;102552;102553;102554;102555;102556;102557;102558;102559;102560;102561;102562;102563;102564;102565;102566;102567;102568;102569;102570;102571;102572;102573;102574;102575;102576;102577;102578;102579;102580;102581;102582;102583;102584;102585;102586;102587;102588;102589;102590;102591;102592 104145;104146;104147;104148;104149;104150;104151;104152;104153;104154;104155;104156;104157;104158;104159;104160;104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177;104178;104179;104180;104181;104182;104183;104184;104185;104186;104187;104188;104189;104190;104191;104192;104193;104194;104195;104196;104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212;104213;104214;104215;104216;104217;104218;104219;104220;104221;104222;104223;104224;104225;104226;104227;104228;104229;104230;104231;104232;104233;104234;104235;104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250;104251 104190 297 107 LEYNYNSHNVYIMADKQK KGIDFKEDGNILGHKLEYNYNSHNVYIMAD NYNSHNVYIMADKQKNGIKVNFKIRHNIED K L E Q K N 1 0 3 1 0 1 1 0 1 1 1 2 1 0 0 1 0 0 3 1 0 0 18 1 2229.0525 CON__Q9U6Y5 CON__Q9U6Y5 141 158 yes yes 2;3;4 1.3576E-12 154.07 By MS/MS By matching By matching By MS/MS By MS/MS 18 5 5 9 7 1.2078 1.2034 84.193 44 Median 1.1239 1.0671 8.9003 18 1 Median 1.0311 0.93569 9.6993 5 0 Median 1.2857 1.3149 7.4691 5 0 Median 1.8124 1.6789 26.442 9 1 Median 12.069 12.834 47.278 7 1 Median NaN NaN NaN 0 0 Median 1947000000 818500000 1128500000 1632400000 751820000 880590000 14128000 6165600 7962200 20384000 9024000 11360000 106670000 39799000 66872000 173370000 11692000 161680000 0 0 0 + 19635 795 20475;20476 102593;102594;102595;102596;102597;102598;102599;102600;102601;102602;102603;102604;102605;102606;102607;102608;102609;102610;102611;102612;102613;102614;102615;102616;102617;102618;102619;102620;102621;102622;102623;102624;102625;102626;102627;102628;102629;102630;102631;102632;102633;102634;102635;102636 104252;104253;104254;104255;104256;104257;104258;104259;104260;104261;104262;104263;104264;104265;104266;104267;104268;104269;104270;104271;104272;104273;104274;104275;104276;104277;104278;104279;104280;104281;104282;104283;104284;104285;104286;104287 104270 297 36 LFAAELGR QKTLFPLRSIDDVVRLFAAELGREEPDLVL SIDDVVRLFAAELGREEPDLVLLSLVLGFV R L F G R E 2 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 875.4865 E7EN32;O00255;E7ENS2;E7EPR4;E7ET29;Q9GZQ5 E7EN32 22 29 MEN1 Menin yes no 2 0.020415 46.426 By matching By matching By MS/MS 1 2 2 1.1528 1.0165 75.761 5 Median 0.2012 0.20842 NaN 1 0 Median 1.3137 1.1295 14.904 2 0 Median NaN NaN NaN 0 0 Median 1.3337 1.0871 19.689 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9060600 5350400 3710200 4348900 3374600 974350 3333400 1384100 1949300 0 0 0 1378200 591730 786480 0 0 0 0 0 0 19636 860 20477 102637;102638;102639;102640;102641 104288;104289 104288 2 LFAAYNEGIINLLEK VINAAFMLLFKDAIRLFAAYNEGIINLLEK LFAAYNEGIINLLEKYFDMKKNQCKEGLDI R L F E K Y 2 0 2 0 0 0 2 1 0 2 3 1 0 1 0 0 0 0 1 0 0 0 15 0 1706.9243 Q13492 Q13492 207 221 PICALM Phosphatidylinositol-binding clathrin assembly protein yes yes 2 2.0897E-06 93.258 By MS/MS 1 1.011 0.86066 NaN 1 Median NaN NaN NaN 0 0 Median 1.011 0.86066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4498300 2253200 2245100 0 0 0 4498300 2253200 2245100 0 0 0 0 0 0 0 0 0 0 0 0 19637 2820 20478 102642 104290 104290 1 LFACMNPATDVGKR DRGDTEPLVRHPDFRLFACMNPATDVGKRN RLFACMNPATDVGKRNLPPGIRNRFTELYV R L F K R N 2 1 1 1 1 0 0 1 0 0 1 1 1 1 1 0 1 0 0 1 0 0 14 1 1578.7647 Q9NU22;Q5T795 Q9NU22 879 892 MDN1 Midasin yes no 3 4.7044E-05 78.486 By MS/MS 1 0.67282 0.77896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67282 0.77896 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5276500 3488500 1788000 0 0 0 0 0 0 5276500 3488500 1788000 0 0 0 0 0 0 0 0 0 19638 4112 20479 102643 104291 104291 1 LFADAEEEQR ILNKYVGESEANIRKLFADAEEEQRRLGAN ANIRKLFADAEEEQRRLGANSGLHIIIFDE K L F Q R R 2 1 0 1 0 1 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 0 1206.5517 I3L0N3;P46459 I3L0N3 300 309 NSF Vesicle-fusing ATPase yes no 2 0.00033784 85.731 By MS/MS By MS/MS By matching 1 1 1 1.3001 1.0421 10.28 3 Median 1.0202 0.98864 NaN 1 0 Median 1.3909 1.2057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3001 1.0421 NaN 1 0 Median 6545600 2628500 3917200 3537000 1577600 1959400 2747100 930660 1816400 0 0 0 0 0 0 0 0 0 261570 120200 141370 19639 1272 20480 102644;102645;102646 104292;104293 104292 2 LFADAEEEQRR ILNKYVGESEANIRKLFADAEEEQRRLGAN NIRKLFADAEEEQRRLGANSGLHIIIFDEI K L F R R L 2 2 0 1 0 1 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 11 1 1362.6528 I3L0N3;P46459 I3L0N3 300 310 NSF Vesicle-fusing ATPase yes no 3 0.014834 25.437 By MS/MS By matching 1 1 0.69868 0.72782 26.892 2 Median 0.85853 0.88025 NaN 1 0 Median 0.5686 0.60178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3762900 1981400 1781500 2472100 1400700 1071400 1290800 580730 710060 0 0 0 0 0 0 0 0 0 0 0 0 19640 1272 20481 102647;102648 104294 104294 1 LFADAVQELLPQYK ELVDSICENARRYAKLFADAVQELLPQYKE KLFADAVQELLPQYKEREVVNKDVLDVYIE K L F Y K E 2 0 0 1 0 2 1 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 14 0 1633.8716 P33993 P33993 76 89 MCM7 DNA replication licensing factor MCM7 yes yes 2 6.1042E-06 135.66 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 3 2 2 0.78114 0.70333 16.366 12 Median 0.78885 0.70876 NaN 1 0 Median 1.0154 0.87543 11.935 4 0 Median 0.69226 0.6956 4.7467 3 0 Plateau NaN NaN NaN 0 0 Median 0.70892 0.70968 9.6153 2 0 Median 0.78787 0.67335 0.59549 2 0 Median 71428000 37057000 34372000 16897000 9114100 7783000 36216000 17671000 18545000 15642000 8723800 6918400 0 0 0 2244100 1323500 920660 428930 224270 204660 19641 2225 20482 102649;102650;102651;102652;102653;102654;102655;102656;102657;102658;102659;102660 104295;104296;104297;104298;104299;104300;104301;104302;104303;104304 104299 10 LFAELEIK DPELFKQAVYKQTMKLFAELEIKRKEREAK VYKQTMKLFAELEIKRKEREAKEMHERKRQ K L F I K R 1 0 0 0 0 0 2 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 961.54843 O75937;S4R3J5 O75937 169 176 DNAJC8 DnaJ homolog subfamily C member 8 yes no 2 0.01337 53.166 By matching By matching By MS/MS 1 1 1 1.3101 1.0574 10.414 3 Plateau 1.0756 1.0574 NaN 1 0 Median 1.2278 1.0377 NaN 1 0 Median 1.3101 1.2536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6689000 2989200 3699800 1289100 650540 638590 1495300 643290 852040 3904600 1695400 2209200 0 0 0 0 0 0 0 0 0 19642 1709 20483 102661;102662;102663 104305;104306 104305 2 LFAIEEETTTR EFEVLKKLNHKNIVKLFAIEEETTTRHKVL NIVKLFAIEEETTTRHKVLIMEFCPCGSLY K L F T R H 1 1 0 0 0 0 3 0 0 1 1 0 0 1 0 0 3 0 0 0 0 0 11 0 1308.6561 A0A494C0R4;A0A494C0A8;A0A494C1M6;A0A494C0X2;A0A494C167;A0A494C148;A0A494C045;Q9UHD2;A0A494C079;F5GZI4;F5H206;F5H1A3;A0A494C1I2 A0A494C0R4 29 39 TBK1 Serine/threonine-protein kinase TBK1 yes no 2 0.00019545 75.378 By MS/MS By matching By matching 1 1 1 1.0565 1.0348 14.822 3 Median 1.0565 1.0348 NaN 1 0 Median 1.2928 1.1359 NaN 1 0 Median 0.78361 0.84968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7466500 3732000 3734500 2664300 1320400 1343800 1499100 619220 879860 3303100 1792300 1510800 0 0 0 0 0 0 0 0 0 19643 456 20484 102664;102665;102666 104307 104307 1 LFALVLTPTR FALPILNALLETPQRLFALVLTPTRELAFQ ETPQRLFALVLTPTRELAFQISEQFEALGS R L F T R E 1 1 0 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 1 0 0 10 0 1129.6859 Q9H0S4 Q9H0S4 93 102 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.00039551 78.334 By matching By matching By MS/MS By matching By matching 1 1 1 1 3 0.95678 0.90939 17.02 7 Median 1.1971 1.1669 NaN 1 0 Median 1.0427 0.90939 NaN 1 0 Median 0.98306 0.96843 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95678 0.96592 NaN 1 0 Median 0.88461 0.77489 5.0618 3 0 Median 16633000 7920300 8712800 474260 200240 274020 948890 417950 530940 12799000 6058500 6740200 0 0 0 1363800 713550 650260 1047500 530090 517460 19644 3928 20485 102667;102668;102669;102670;102671;102672;102673 104308;104309 104309 2 LFAVVHFASR VKKVNEMIVTGQYGRLFAVVHFASRQWKVT GQYGRLFAVVHFASRQWKVTSEDLILIGNE R L F S R Q 2 1 0 0 0 0 0 0 1 0 1 0 0 2 0 1 0 0 0 2 0 0 10 0 1145.6346 Q7Z2W9;F5H7V8;H3BUY0 Q7Z2W9 95 104 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.011457 42.599 By MS/MS By matching 1 1 1.3421 1.1059 2.3969 2 Median NaN NaN NaN 0 0 Median 1.3539 1.1248 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3305 1.0873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1907000 774690 1132300 0 0 0 1632100 684490 947640 0 0 0 274910 90207 184700 0 0 0 0 0 0 19645 3237 20486 102674;102675 104310 104310 1 LFCVGFTK EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR TDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ R L F T K K 0 0 0 0 1 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 970.49462 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6;D6RAS7 P61247 137 144 RPS3A 40S ribosomal protein S3a yes no 2 0.013004 53.878 By MS/MS By MS/MS 1 2 1.3366 1.1183 21.202 3 Median 1.0685 0.98513 NaN 1 0 Median 1.5167 1.2909 20.296 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59624000 26249000 33375000 12034000 5703500 6330300 47591000 20546000 27045000 0 0 0 0 0 0 0 0 0 0 0 0 19646 2553 20487 102676;102677;102678 104311;104312;104313;104314 104311 4 LFDANKDR QQWYREHRSELNLRRLFDANKDRFNHFSLT SELNLRRLFDANKDRFNHFSLTLNTNHGHI R L F D R F 1 1 1 2 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 977.49304 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ENA0;K7ELR7;A0A2R8YF08;A0A0J9YXM3;K7ERK8;K7EIL4;A0A0J9YXH9;A0A0J9YYI8 P06744 29 36 GPI Glucose-6-phosphate isomerase yes no 2 0.028207 73.248 By MS/MS By MS/MS By matching 1 2 1 1.0351 1.0192 5.2314 4 Median 1.003 1.0079 NaN 1 0 Median 1.0966 1.0036 3.7615 2 0 Median 1.0057 1.1053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12496000 6145500 6350000 4741000 2314200 2426800 7528500 3710900 3817600 226060 120450 105610 0 0 0 0 0 0 0 0 0 19647 1875 20488 102679;102680;102681;102682 104315;104316;104317 104317 3 LFDAPEAPLPSR NLDDYLHLLLPPIVKLFDAPEAPLPSRKAA IVKLFDAPEAPLPSRKAALETVDRLTESLD K L F S R K 2 1 0 1 0 0 1 0 0 0 2 0 0 1 3 1 0 0 0 0 0 0 12 0 1311.6823 P42345 P42345 1121 1132 MTOR Serine/threonine-protein kinase mTOR yes yes 2 0.068549 40.727 By MS/MS 1 0.76958 0.72231 NaN 1 Median 0.76958 0.72231 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13926000 8353700 5572000 13926000 8353700 5572000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19648 2310 20489 102683 104318 104318 1 LFDATLTQYVK DARLPLSTTSNEACKLFDATLTQYVKWTND EACKLFDATLTQYVKWTNDKSLGGIEGCLS K L F V K W 1 0 0 1 0 1 0 0 0 0 2 1 0 1 0 0 2 0 1 1 0 0 11 0 1297.6918 Q5R3I4;A9UJP8 Q5R3I4 30 40 TTC38 Tetratricopeptide repeat protein 38 yes no 2 0.0034508 49.813 By MS/MS By matching By matching 1 1 1 1.3488 1.2935 7.0038 3 Median 1.2118 1.1597 NaN 1 0 Median 1.5217 1.2935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3488 1.3215 NaN 1 0 Median 10103000 4372500 5730200 3050400 1480600 1569800 6140600 2415600 3725000 0 0 0 0 0 0 0 0 0 911720 476310 435420 19649 3070 20490 102684;102685;102686 104319 104319 1 LFDDDETGKISFK MSEKDTKEEILKAFKLFDDDETGKISFKNL FKLFDDDETGKISFKNLKRVAKELGENLTD K L F F K N 0 0 0 3 0 0 1 1 0 1 1 2 0 2 0 1 1 0 0 0 0 0 13 1 1513.73 P41208;Q12798 P41208 112 124 CETN2;CETN1 Centrin-2;Centrin-1 yes no 3 0.0075739 28.976 By MS/MS 1 0.9557 0.9771 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9557 0.9771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2563500 1382000 1181500 0 0 0 0 0 0 2563500 1382000 1181500 0 0 0 0 0 0 0 0 0 19650 2296 20491 102687 104320;104321 104320 2 LFDDVPQVR NGKSVDDVLSHFAQRLFDDVPQVRRAVASV SHFAQRLFDDVPQVRRAVASVVGGWLLCLR R L F V R R 0 1 0 2 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 9 0 1087.5662 Q86Y56;H0Y650 Q86Y56 254 262 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.0014585 81.296 By MS/MS By matching By matching 1 1 1 0.94249 0.89172 36.229 3 Median 0.94249 0.89172 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95479 1.0201 NaN 1 0 Median 0.57923 0.51482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13306000 6818800 6486900 11976000 5915000 6061100 0 0 0 1131100 758720 372390 198510 145100 53411 0 0 0 0 0 0 19651 3305 20492 102688;102689;102690 104322 104322 1 LFDFPGR GHAEQKDEMVPRLVKLFDFPGRGASQIYAG EMVPRLVKLFDFPGRGASQIYAGYTCSFAV K L F G R G 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 7 0 850.43374 Q9P258 Q9P258 378 384 RCC2 Protein RCC2 yes yes 2 0.0066509 92.319 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 4 1 2 1.0114 0.91737 8.132 14 Median 0.97298 0.96488 16.56 2 0 Median 1.0697 0.9342 10.631 2 0 Median 0.92614 0.91723 8.0732 3 0 Median 1.0878 0.93275 9.3206 4 0 Median 0.94149 0.94925 NaN 1 0 Median 1.0693 0.91109 0.51712 2 0 Median 48680000 24797000 23883000 4881600 2650200 2231400 2060600 991560 1069000 34324000 17609000 16714000 5948900 2790200 3158700 977520 528680 448840 487870 226960 260910 19652 4214 20493 102691;102692;102693;102694;102695;102696;102697;102698;102699;102700;102701;102702;102703;102704 104323;104324;104325;104326;104327;104328;104329;104330;104331 104326 9 LFDFQGLQHQVAHVATQLEAAR YTIPYIKERIQFGKRLFDFQGLQHQVAHVA QHQVAHVATQLEAARLLTYNAARLLEAGKP R L F A R L 4 1 0 1 0 4 1 1 2 0 3 0 0 2 0 0 1 0 0 2 0 0 22 0 2478.2768 P45954 P45954 326 347 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 3 0.00017785 29.84 By matching By MS/MS By matching 1 1 1 1.5414 1.3444 8.3063 3 Plateau 1.1449 1.1586 NaN 1 0 Median 1.5414 1.3444 NaN 1 0 Median 1.3042 1.3306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13360000 5590200 7769700 255400 137320 118080 12800000 5349600 7450900 304030 103330 200710 0 0 0 0 0 0 0 0 0 19653 2330 20494 102705;102706;102707 104332;104333;104334;104335 104333 4 LFDFVNAK TQYTFSSIEREEYGKLFDFVNAKKLNIKNR EREEYGKLFDFVNAKKLNIKNRGLKEGMNP K L F A K K 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 952.50182 Q08945;A0A0U1RRK2 Q08945 414 421 SSRP1 FACT complex subunit SSRP1 yes no 2 0.012659 54.549 By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1.3141 1.1519 10.381 6 Median 1.1517 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.339 1.4151 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2538 1.237 8.7173 2 0 Median 1.363 1.1245 2.0493 2 0 Median 38514000 16719000 21796000 4205300 2054000 2151300 0 0 0 4908300 2013100 2895300 0 0 0 23900000 10185000 13715000 5501300 2466900 3034400 19654 2743 20495 102708;102709;102710;102711;102712;102713 104336;104337;104338;104339;104340 104339 5 LFDHPESPTPNPTEPLFLAQAEVYK VVSGKVYQWDDPDPRLFDHPESPTPNPTEP NPTEPLFLAQAEVYKELRLRGYDYGPHFQG R L F Y K E 2 0 1 1 0 1 3 0 1 0 3 1 0 2 5 1 2 0 1 1 0 0 25 0 2839.4069 P49327;A0A0U1RQF0 P49327 968 992 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 5.712E-13 58.418 By MS/MS By matching 3 1 0.42555 0.4213 5.2896 2 Median 0.42555 0.4213 5.2896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61706000 55057000 6649000 56999000 50898000 6100700 4707000 4158800 548260 0 0 0 0 0 0 0 0 0 0 0 0 19655 2377 20496 102714;102715;102716;102717 104341;104342;104343;104344 104342 4 LFDIFSQQVATVIQSR FAHREDGPGIPADIKLFDIFSQQVATVIQS FDIFSQQVATVIQSRQDMPSEDVVSLQVSL K L F S R Q 1 1 0 1 0 3 0 0 0 2 1 0 0 2 0 2 1 0 0 2 0 0 16 0 1850.989 Q96QK1 Q96QK1 324 339 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 3.0086E-08 140.31 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1517 1.088 5.0787 5 Median 1.1293 1.0807 NaN 1 0 Median 1.2557 1.088 NaN 1 0 Median 1.1517 1.1892 NaN 1 0 Median 1.2596 1.0339 NaN 1 0 Median 1.0526 1.0992 NaN 1 0 Median NaN NaN NaN 0 0 Median 10507000 4527500 5979300 5133400 2185500 2947900 4216900 1789900 2427000 810750 374350 436400 70676 32614 38062 275020 145140 129880 0 0 0 19656 3722 20497 102718;102719;102720;102721;102722 104345;104346;104347;104348 104346 4 LFDNTVGAYR FYFLLDKTGHFPNTKLFDNTVGAYRSL___ FPNTKLFDNTVGAYRSL_____________ K L F Y R S 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 1 0 0 10 0 1154.572 A0PJW6 A0PJW6 191 200 TMEM223 Transmembrane protein 223 yes yes 2 0.00037046 81.548 By MS/MS By MS/MS 2 1 1.4097 1.1755 15.053 3 Median 1.3785 1.3379 18.303 2 0 Median 1.4097 1.1712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12256000 5297600 6958200 10630000 4631300 5998600 1625900 666260 959650 0 0 0 0 0 0 0 0 0 0 0 0 19657 491 20498 102723;102724;102725 104349;104350;104351 104349 3 LFDQAFGLPR GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW YPHSRLFDQAFGLPRLPEEWSQWLGGSSWP R L F P R L 1 1 0 1 0 1 0 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 10 0 1162.6135 P04792;F8WE04 P04792 28 37 HSPB1 Heat shock protein beta-1 yes no 2 0.00034691 119.27 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 3 1 0.81233 0.83677 29.646 10 Median 0.7816 0.76309 12.907 2 0 Median 1.0606 0.89997 10.169 2 0 Median 0.4842 0.46488 NaN 1 0 Median 1.1794 0.97667 NaN 1 0 Median 0.56282 0.57147 26.896 3 0 Median 1.394 1.1212 NaN 1 0 Median 455760000 249910000 205860000 298790000 157930000 140860000 32594000 14882000 17712000 43428000 28561000 14867000 2297400 1064800 1232600 71979000 44737000 27241000 6675200 2728800 3946400 19658 1851 20499 102726;102727;102728;102729;102730;102731;102732;102733;102734;102735 104352;104353;104354;104355;104356;104357;104358;104359;104360;104361;104362;104363 104363 12 LFDRGDFYTAHGEDALLAAR RFFQGMPEKPTTTVRLFDRGDFYTAHGEDA DFYTAHGEDALLAAREVFKTQGVIKYMGPA R L F A R E 4 2 0 3 0 0 1 2 1 0 3 0 0 2 0 0 1 0 1 0 0 0 20 1 2237.0865 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 36 55 MSH2 DNA mismatch repair protein Msh2 yes no 3;4 0.016485 24.875 By MS/MS By MS/MS 1 1 0.81713 0.92584 2.6478 2 Median 0.84907 0.94333 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.78639 0.90866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7018000 3140000 3878000 4792800 2053800 2739000 0 0 0 2225100 1086200 1138900 0 0 0 0 0 0 0 0 0 19659 2324 20500 102736;102737 104364;104365 104364 2 LFDSTTLEHQK DMTMFVTASKDNTAKLFDSTTLEHQKTFRT NTAKLFDSTTLEHQKTFRTERPVNSAALSP K L F Q K T 0 0 0 1 0 1 1 0 1 0 2 1 0 1 0 1 2 0 0 0 0 0 11 0 1317.6565 Q13347 Q13347 214 224 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2;3 9.4037E-05 103.7 By MS/MS By MS/MS By MS/MS 5 2 1 1.1897 1.0773 7.0701 7 Median 1.1773 1.0783 4.8778 4 1 Median 1.271 1.0645 2.7757 2 0 Median 0.9669 0.92667 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 163410000 69836000 93576000 91271000 42277000 48994000 67084000 25315000 41770000 5055800 2243900 2812000 0 0 0 0 0 0 0 0 0 19660 2806 20501 102738;102739;102740;102741;102742;102743;102744;102745 104366;104367;104368;104369;104370;104371;104372;104373;104374 104369 9 LFDWANTSR DVAPMGREGVTAMHKLFDWANTSRRGLLLF VTAMHKLFDWANTSRRGLLLFVDEADAFLR K L F S R R 1 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 9 0 1108.5302 H0Y2W2;Q5SV16;Q5T9A4;Q9NVI7 H0Y2W2 381 389 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.0032081 78.334 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1.2743 1.2787 40.352 5 Median 1.1065 1.0397 NaN 1 0 Median 0.94849 0.84969 NaN 1 0 Median 2.4141 2.4501 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3397 1.3868 11.478 2 0 Median NaN NaN NaN 0 0 Median 67991000 27878000 40112000 45506000 21217000 24289000 233210 110860 122350 15682000 3732900 11949000 0 0 0 6570100 2817600 3752500 0 0 0 19661 1140;4133;3098 20502 102746;102747;102748;102749;102750;102751 104375;104376;104377;104378;104379;104380 104379 6 LFDYFPKPYPNSEAAR DGPNEDGEMFMRPGKLFDYFPKPYPNSEAA FDYFPKPYPNSEAARAANNGALPPDLSYIV K L F A R A 2 1 1 1 0 0 1 0 0 0 1 1 0 2 3 1 0 0 2 0 0 0 16 1 1913.9312 P08574 P08574 171 186 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 2;3 0.00063898 56.094 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.66649 0.67899 16.407 9 Median 0.6542 0.77185 18.362 4 0 Linear 0.80924 0.75905 25.989 2 0 Median 0.67845 0.70094 7.8687 2 0 Median 0.85657 0.75824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49098000 27949000 21149000 36089000 20624000 15465000 5370100 2797100 2572900 7376600 4380200 2996400 262830 147840 114990 0 0 0 0 0 0 19662 1903 20503 102752;102753;102754;102755;102756;102757;102758;102759;102760 104381;104382;104383;104384;104385;104386;104387 104382 7 LFDYSKPSAK TEQILASGSRDYTLKLFDYSKPSAKRAFKY DYTLKLFDYSKPSAKRAFKYIQEAEMLRSI K L F A K R 1 0 0 1 0 0 0 0 0 0 1 2 0 1 1 2 0 0 1 0 0 0 10 1 1154.5972 Q05048;A0A0A0MSZ9 Q05048 199 208 CSTF1 Cleavage stimulation factor subunit 1 yes no 2 0.0018647 103.55 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0052 1.0016 25.267 4 Median 0.70905 0.69644 NaN 1 0 Median 1.274 1.2021 NaN 1 0 Median 0.84042 0.87851 NaN 1 0 Median 1.2022 1.1419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21804000 10570000 11234000 1210700 652620 558090 506090 205450 300640 10513000 5325300 5187600 9573900 4386300 5187500 0 0 0 0 0 0 19663 2716 20504 102761;102762;102763;102764 104388;104389;104390;104391 104390 4 LFEAEAQDLFR GSFWAQPLQNTDNRRLFEAEAQDLFRDIQS DNRRLFEAEAQDLFRDIQSLPQKAAVRKLN R L F F R D 2 1 0 1 0 1 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 11 0 1337.6616 Q9H223 Q9H223 273 283 EHD4 EH domain-containing protein 4 yes yes 2 0.00018232 102.61 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 1 2 0.97608 0.83571 68.051 6 Median 1.0335 1.004 NaN 1 0 Median 0.99574 0.85942 NaN 1 0 Median 0.14728 0.16521 NaN 1 0 Median 0.95681 0.81265 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9666 0.82757 7.826 2 0 Median 20801000 14700000 6101300 5156500 2443700 2712700 1552500 699130 853330 11059000 10272000 787310 375850 187380 188470 0 0 0 2656800 1097400 1559400 19664 3939 20505 102765;102766;102767;102768;102769;102770;102771 104392;104393;104394;104395 104392 4 LFEASIETGDR GATGVFTNSSWLWNKLFEASIETGDRVWRM LWNKLFEASIETGDRVWRMPLFEHYTRQVV K L F D R V 1 1 0 1 0 0 2 1 0 1 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1236.5986 P28838;H0Y9Q1 P28838 418 428 LAP3 Cytosol aminopeptidase yes no 2 0.00015814 98.033 By MS/MS By MS/MS 1 1 1.1352 1.0891 NaN 1 Median 1.1352 1.0891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9804000 4276400 5527600 9804000 4276400 5527600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19665 2167 20506 102772;102773 104396;104397 104397 2 LFEAVEEGR LKPFLDDSTLRFVDKLFEAVEEGRSSRHSK LRFVDKLFEAVEEGRSSRHSKSSSDRSRKR K L F G R S 1 1 0 0 0 0 3 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1048.5189 O43395 O43395 66 74 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.00091857 90.657 By matching By matching By MS/MS 1 1 1 1.2329 1.0773 22.397 3 Median NaN NaN NaN 0 0 Median 1.2329 1.0773 NaN 1 0 Median 0.81205 0.82942 NaN 1 0 Median 1.503 1.2952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15011000 6920700 8090600 0 0 0 1753600 796450 957150 8708200 4190600 4517500 4549500 1933600 2615900 0 0 0 0 0 0 19666 1569 20507 102774;102775;102776 104398;104399 104399 2 LFEELGK QPIKIRFQESEERPKLFEELGKQIQQYMKI QESEERPKLFEELGKQIQQYMKIISSFKNK K L F G K Q 0 0 0 0 0 0 2 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 7 0 834.44872 P34932 P34932 698 704 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.012264 78.616 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1.2359 1.0455 60.165 7 Median 1.3462 1.2997 NaN 1 0 Median 1.1733 1.0118 4.6327 2 0 Median 1.0314 1.1436 35.224 2 0 Median 1.33 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.25237 0.24223 NaN 1 0 Median 37620000 16247000 21373000 16150000 6585300 9565100 14912000 6860900 8051400 4813900 1939300 2874700 1094500 460720 633790 0 0 0 649140 401020 248120 19667 2230 20508 102777;102778;102779;102780;102781;102782;102783 104400;104401;104402;104403;104404;104405 104401 6 LFEEPEDPSNR LCDMRASALCDRHSKLFEEPEDPSNRSFFS RHSKLFEEPEDPSNRSFFSEIISSISDVKF K L F N R S 0 1 1 1 0 0 3 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1331.5994 P63151;A0A590UJY3;A0A590UJJ1;E5RFR9;Q9Y2T4 P63151 268 278 PPP2R2A;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 2 0.00011219 124.23 By MS/MS By MS/MS By MS/MS 1 1 1 0.76642 0.64498 12.277 3 Median 0.66067 0.62891 NaN 1 0 Median 0.76642 0.64498 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91109 0.78691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25424000 14481000 10943000 13814000 8114900 5699300 10473000 5836900 4636400 0 0 0 1136100 529170 606920 0 0 0 0 0 0 19668 2619 20509 102784;102785;102786 104406;104407;104408;104409;104410 104406 5 LFEETGHEDPITK IRPPKYYTYKFAEGKLFEETGHEDPITKTS GKLFEETGHEDPITKTSRVLRLEAKSKDGK K L F T K T 0 0 0 1 0 0 3 1 1 1 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1514.7253 Q4J6C6 Q4J6C6 427 439 PREPL Prolyl endopeptidase-like yes yes 3 0.0019981 54.309 By MS/MS 1 1.2372 1.0966 NaN 1 Median NaN NaN NaN 0 0 Median 1.2372 1.0966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12122000 6183400 5938600 0 0 0 12122000 6183400 5938600 0 0 0 0 0 0 0 0 0 0 0 0 19669 3021 20510 102787 104411 104411 1 LFEFAGYDVLR VGHLRSTIIGESISRLFEFAGYDVLRLNHV SISRLFEFAGYDVLRLNHVGDWGTQFGMLI R L F L R L 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 0 0 0 1 1 0 0 11 0 1328.6765 P54136 P54136 224 234 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0004849 68.735 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.239 1.0897 9.6658 5 Median 1.2796 1.2485 7.5294 2 0 Median 1.2599 1.0897 NaN 1 0 Median 1.0108 1.0507 NaN 1 0 Median 1.2242 1.051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23174000 10601000 12573000 9927300 4653400 5273900 12035000 5255000 6780000 968480 565040 403440 242860 127580 115270 0 0 0 0 0 0 19670 2480 20511 102788;102789;102790;102791;102792 104412;104413;104414;104415 104415 4 LFEGIIK ILLSGCLPFYGTKERLFEGIIKGKYKMNPR PFYGTKERLFEGIIKGKYKMNPRQWSHISE R L F I K G 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 7 0 818.49019 A0A2R8YEJ7;A0A2R8Y3B3;A0A2U3TZN6;A0A2U3TZM4;A0A2R8Y6F8;A0A2R8YFN5;A0A2U3TZM1;A0A2R8YE77;A0A2R8YEK3;O14936;A0A2R8Y6D8 A0A2R8YEJ7 41 47 CASK Peripheral plasma membrane protein CASK yes no 2 0.014908 73.039 By matching By matching By MS/MS By matching By matching By matching 2 4 2 2 1 1 1.2916 1.1807 11.657 12 Median 1.0798 1.0764 26.779 2 0 Median 1.3732 1.2135 8.9919 4 0 Median 1.0717 1.1111 9.7896 2 0 Median 1.254 1.1063 14.427 2 0 Median 1.1358 1.1708 NaN 1 0 Median 1.4029 1.2067 NaN 1 0 Median 39901000 18021000 21880000 1794400 851350 943090 8139500 3437700 4701800 19115000 8788900 10326000 8632300 3914600 4717800 2085400 976810 1108600 134070 51699 82374 19671 356 20512 102793;102794;102795;102796;102797;102798;102799;102800;102801;102802;102803;102804 104416;104417 104416 2 LFEGNALLR AARELLTLDEKDPRRLFEGNALLRRLVRIG EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R L F L R R 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.5764 P46781;B5MCT8;C9JM19 P46781 71 79 RPS9 40S ribosomal protein S9 yes no 2 0.00012778 145.04 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 5 5 1 1 5 4 1.209 1.0825 14.95 21 Median 1.1406 1.1263 7.6424 5 0 Median 1.1535 0.97513 12.968 5 0 Median 1.1576 1.1114 NaN 1 0 Median 1.2912 1.0718 NaN 1 0 Median 1.32 1.3982 14.884 5 0 Median 1.3648 1.0787 3.7442 4 0 Median 664810000 307630000 357180000 374350000 178880000 195470000 58401000 26507000 31894000 40349000 19283000 21067000 5034300 2185400 2848900 104830000 46734000 58093000 81854000 34041000 47813000 19672 2345 20513 102805;102806;102807;102808;102809;102810;102811;102812;102813;102814;102815;102816;102817;102818;102819;102820;102821;102822;102823;102824;102825 104418;104419;104420;104421;104422;104423;104424;104425;104426;104427;104428;104429;104430;104431;104432;104433;104434;104435;104436;104437;104438;104439;104440;104441 104430 23 LFEGNALLRR AARELLTLDEKDPRRLFEGNALLRRLVRIG KDPRRLFEGNALLRRLVRIGVLDEGKMKLD R L F R R L 1 2 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 1 1187.6775 P46781;B5MCT8;C9JM19 P46781 71 80 RPS9 40S ribosomal protein S9 yes no 2;3 0.00054185 80.165 By MS/MS By MS/MS By matching 3 2 1 1.1709 1.1156 29.453 4 Median 0.96672 0.99728 29.541 2 0 Median 1.1925 1.0127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4938 1.62 NaN 1 0 Median NaN NaN NaN 0 0 Median 54769000 18466000 36303000 38965000 13011000 25955000 10001000 3100400 6900700 0 0 0 0 0 0 5802500 2355300 3447200 0 0 0 19673 2345 20514 102826;102827;102828;102829;102830;102831 104442;104443;104444;104445;104446;104447 104442 6 LFEHYYQELK AGWEGGYPEIVKENKLFEHYYQELKIVPEG VKENKLFEHYYQELKIVPEGEWGQFMDALR K L F L K I 0 0 0 0 0 1 2 0 1 0 2 1 0 1 0 0 0 0 2 0 0 0 10 0 1368.6714 Q08J23;A0A140T9Y7 Q08J23 47 56 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 2 0.0010169 102.06 By MS/MS 1 1.3243 1.2286 NaN 1 Median 1.3243 1.2286 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6256500 2818600 3437900 6256500 2818600 3437900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19674 2745 20515 102832 104448 104448 1 LFEISDIVIK LKTIAANRKMPLPLKLFEISDIVIKDSNTD PLPLKLFEISDIVIKDSNTDVGAKNYRHLC K L F I K D 0 0 0 1 0 0 1 0 0 3 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6802 Q9NSD9 Q9NSD9 474 483 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.011457 42.599 By matching By MS/MS By matching By matching 1 1 1 1 1.0685 0.96524 23.322 4 Median 0.97447 0.93945 NaN 1 0 Median 1.1717 0.99174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.341 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77834 0.66333 NaN 1 0 Median 8879500 4177100 4702400 2496700 1205600 1291100 5681500 2527400 3154100 0 0 0 274880 133630 141250 0 0 0 426420 310500 115920 19675 4102 20516 102833;102834;102835;102836 104449 104449 1 LFEISDIVIKDSNTDVGAK LKTIAANRKMPLPLKLFEISDIVIKDSNTD SDIVIKDSNTDVGAKNYRHLCAVYYNKNPG K L F A K N 1 0 1 3 0 0 1 1 0 3 1 2 0 1 0 2 1 0 0 2 0 0 19 1 2063.0787 Q9NSD9 Q9NSD9 474 492 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 3 0.025865 23.329 By MS/MS 1 0.73564 0.69158 NaN 1 Median 0.73564 0.69158 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9191600 5003100 4188500 9191600 5003100 4188500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19676 4102 20517 102837 104450 104450 1 LFELLEK PKQPNVQDFQFFPPRLFELLEKEILFYRKT DFQFFPPRLFELLEKEILFYRKTIGYKVPR R L F E K E 0 0 0 0 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 890.51132 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 781 787 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.01596 69.998 By MS/MS By matching By MS/MS 1 1 3 1.1047 1.1122 24.06 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0563 1.1348 NaN 1 0 Median 1.2692 1.0633 NaN 1 0 Median 1.1047 1.1122 31.246 3 1 Median NaN NaN NaN 0 0 Median 28776000 12046000 16730000 0 0 0 0 0 0 7166600 3333300 3833200 1053100 428030 625090 20557000 8285100 12272000 0 0 0 19677 1608;643;167 20518 102838;102839;102840;102841;102842 104451;104452;104453 104453 3 LFELTVER ITGDLSDNHDVISLKLFELTVERTPEEEKL HDVISLKLFELTVERTPEEEKLHRDVFLPS K L F E R T 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 8 0 1005.5495 Q9H0V9 Q9H0V9 271 278 LMAN2L VIP36-like protein yes yes 2 0.036117 57.281 By MS/MS 1 1.452 1.3952 NaN 1 Median 1.452 1.3952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2911900 1193900 1717900 2911900 1193900 1717900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19678 3931 20519 102843 104454 104454 1 LFEMAYK NIRQAASSLQQASLKLFEMAYKKMASEREG SLQQASLKLFEMAYKKMASEREGSGSSGTG K L F Y K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 7 0 900.44153 P38646 P38646 647 653 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.013989 75.311 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 1.2946 1.1542 26.197 8 Median 1.0041 0.94065 2.9007 3 2 Median 1.691 1.4526 28.372 2 0 Median 1.2749 1.2805 NaN 1 0 Median 1.3145 1.1208 NaN 1 0 Median 1.6633 1.7082 NaN 1 0 Median NaN NaN NaN 0 0 Median 167380000 71066000 96314000 44793000 21195000 23598000 102270000 40590000 61676000 16668000 7765400 8902900 2320500 958690 1361800 1331700 556320 775400 0 0 0 19679 2277 20520 102844;102845;102846;102847;102848;102849;102850;102851 104455;104456;104457;104458;104459;104460;104461;104462;104463 104461 9 LFEMAYKK NIRQAASSLQQASLKLFEMAYKKMASEREG LQQASLKLFEMAYKKMASEREGSGSSGTGE K L F K K M 1 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 0 1 0 0 0 8 1 1028.5365 P38646 P38646 647 654 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.0069102 79.116 By MS/MS 1 0.96153 0.89684 NaN 1 Median 0.96153 0.89684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26483000 11201000 15282000 26483000 11201000 15282000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19680 2277 20521 102852 104464 104464 1 LFEMVLGPAAYNVPLPK HFRESVEKTIPYSDKLFEMVLGPAAYNVPL EMVLGPAAYNVPLPKKSIQSGPLKISSVSE K L F P K K 2 0 1 0 0 0 1 1 0 0 3 1 1 1 3 0 0 0 1 2 0 0 17 0 1858.0063 Q16891;B9A067;A0A087WYS0;D6RAW4 Q16891 85 101 IMMT MICOS complex subunit MIC60 yes no 2 2.3176E-05 60.434 By MS/MS By matching By matching 1 1 1 0.8509 0.74924 1.9348 3 Median NaN NaN NaN 0 0 Median 0.8509 0.74924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84212 0.73377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87373 0.76269 NaN 1 0 Median 3041300 1638200 1403000 0 0 0 2876300 1551000 1325300 0 0 0 50938 28927 22011 0 0 0 114000 58303 55701 19681 3001 20522 102853;102854;102855 104465 104465 1 LFENFLVDMAR EVEMKEIYTSNHIWKLFENFLVDMARVCNT HIWKLFENFLVDMARVCNTTTDRKHADIFL K L F A R V 1 1 1 1 0 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 11 0 1353.6751 Q14571 Q14571 1450 1460 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 2 0.0042489 69.954 By MS/MS 1 0.92712 0.91841 NaN 1 Median 0.92712 0.91841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 609740 311580 298170 609740 311580 298170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19682 2882 20523 102856 104466 104466 1 LFENQLVGPESIAHIGDVMFTGTADGR LGVLHPNTKLRQAERLFENQLVGPESIAHI AHIGDVMFTGTADGRVVKLENGEIETIARF R L F G R V 2 1 1 2 0 1 2 4 1 2 2 0 1 2 1 1 2 0 0 2 0 0 27 0 2873.4018 Q9HDC9;H0Y512 Q9HDC9 94 120 APMAP Adipocyte plasma membrane-associated protein yes no 3 0.037338 11.105 By MS/MS 2 1.2065 1.0382 1.5151 2 Median NaN NaN NaN 0 0 Median 1.2065 1.0382 1.5151 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3116100 1187700 1928400 0 0 0 3116100 1187700 1928400 0 0 0 0 0 0 0 0 0 0 0 0 19683 4039 20524 102857;102858 104467 104467 1 LFEQNVQR PLNKEAAEVLQNNRRLFEQNVQRSMRGGYI VLQNNRRLFEQNVQRSMRGGYIGSTYFERC R L F Q R S 0 1 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 1032.5352 P61081;M0QX69 P61081 159 166 UBE2M NEDD8-conjugating enzyme Ubc12 yes no 2 0.00012658 155.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 2 2 1.2035 1.0998 33.787 13 Median 1.1243 1.0998 11.233 3 0 Median 1.2458 1.0553 8.6772 3 0 Median 1.1435 1.1203 7.8714 2 0 Median 1.1842 0.95963 20.263 2 0 Median 2.2391 2.2423 43.07 2 1 Median 1.0518 0.84938 NaN 1 0 Median 96320000 43099000 53221000 28871000 14142000 14729000 18952000 8315600 10636000 36868000 15903000 20965000 4704900 2175400 2529400 3719500 1284900 2434600 3205000 1278200 1926800 19684 2542 20525 102859;102860;102861;102862;102863;102864;102865;102866;102867;102868;102869;102870;102871;102872 104468;104469;104470;104471;104472;104473;104474;104475;104476;104477;104478;104479;104480;104481;104482;104483;104484;104485;104486 104475 19 LFEVGGSPANTR TVCGDIHGQFFDLMKLFEVGGSPANTRYLF LMKLFEVGGSPANTRYLFLGDYVDRGYFSI K L F T R Y 1 1 1 0 0 0 1 2 0 0 1 0 0 1 1 1 1 0 0 1 0 0 12 0 1246.6306 Q08209;E9PPC8;E9PK68;E7ETC2 Q08209 101 112 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase no no 2 9.3873E-06 107.24 By MS/MS By MS/MS By matching By matching 3 1 1 1 0.91824 0.95275 34.214 5 Median 0.64449 0.61998 45.06 2 1 Median 1.2476 1.0503 NaN 1 0 Median 0.91824 0.96065 NaN 1 0 Median 1.1043 0.95275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32245000 16297000 15947000 18365000 9858900 8506200 9406800 4329600 5077200 3113900 1469600 1644300 1358900 639130 719790 0 0 0 0 0 0 19685 2735 20526 102873;102874;102875;102876;102877;102878 104487;104488;104489;104490 104487 4 LFEYKEDSK LTPVAIAAGRKLAHRLFEYKEDSKLDYNNI RKLAHRLFEYKEDSKLDYNNIPTVVFSHPP R L F S K L 0 0 0 1 0 0 2 0 0 0 1 2 0 1 0 1 0 0 1 0 0 0 9 1 1157.5605 P00390 P00390 397 405 GSR Glutathione reductase, mitochondrial yes yes 2 0.0018467 101.64 By MS/MS By MS/MS 1 2 1.1691 1.1115 11.334 2 Median 1.0682 1.0259 NaN 1 0 Median 1.2795 1.2042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6754200 3018700 3735500 4808300 2140800 2667500 1945900 877830 1068000 0 0 0 0 0 0 0 0 0 0 0 0 19686 1817 20527 102879;102880;102881 104491;104492;104493;104494 104493 4 LFFAGEHTIR TPGPSIPGAPQPIPRLFFAGEHTIRNYPAT QPIPRLFFAGEHTIRNYPATVHGALLSGLR R L F I R N 1 1 0 0 0 0 1 1 1 1 1 0 0 2 0 0 1 0 0 0 0 0 10 0 1189.6244 O60341;R4GMQ1;R4GMP9 O60341 796 805 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 0.0001352 98.033 By MS/MS By MS/MS By MS/MS 1 2 1 1.0322 1.0968 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0322 1.0968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17826000 4814800 13011000 0 0 0 0 0 0 16283000 4814800 11469000 1542200 0 1542200 0 0 0 0 0 0 19687 1613 20528 102882;102883;102884;102885 104495;104496;104497;104498 104498 4 LFFLQVK PEDVSEELIQDITQRLFFLQVKEGILNDDI LIQDITQRLFFLQVKEGILNDDIYCPPETA R L F V K E 0 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 1 0 0 7 0 893.53747 P26038;V9GZ54;P15311;E7EQR4;E9PQ82;P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3;A0A2R8Y5P0 P26038 101 107 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 1;2 0.0047406 99.511 By MS/MS By matching By MS/MS By matching By MS/MS 8 6 7 5 2 1.2392 1.1549 13.95 28 Median 1.2288 1.1691 14.644 8 0 Median 1.2242 1.0703 16.409 6 0 Median 1.2223 1.215 10.379 7 0 Median 1.3148 1.1413 10.001 5 0 Median 1.2433 1.2434 15.978 2 0 Median NaN NaN NaN 0 0 Median 184230000 79601000 104620000 46079000 20452000 25627000 44466000 19660000 24806000 84494000 35691000 48803000 5437000 2270600 3166500 3749200 1528200 2221000 0 0 0 19688 2139;879;2235 20529 102886;102887;102888;102889;102890;102891;102892;102893;102894;102895;102896;102897;102898;102899;102900;102901;102902;102903;102904;102905;102906;102907;102908;102909;102910;102911;102912;102913 104499;104500;104501;104502;104503;104504;104505;104506;104507;104508;104509 104508 11 LFFTSVPGGR KAKVQKVALEDDGFRLFFTSVPGGREKEES DDGFRLFFTSVPGGREKEESPQPRRKRQPS R L F G R E 0 1 0 0 0 0 0 2 0 0 1 0 0 2 1 1 1 0 0 1 0 0 10 0 1079.5764 F5H7W8;Q96C57;F5H3K2;E7ENF1;F5H8B7 F5H7W8 155 164 C12orf43 Uncharacterized protein C12orf43 yes no 2 0.0019589 61.962 By MS/MS By matching 2 1 0.75802 0.75079 26.145 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82586 0.7959 8.2505 2 0 Median 0.62054 0.51185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6871800 4206700 2665100 0 0 0 0 0 0 6745800 4135200 2610600 125980 71546 54430 0 0 0 0 0 0 19689 1045 20530 102914;102915;102916 104510;104511 104510 2 LFFVGSR SCFGSVNGSLFTSSRLFFVGSREGHLPSIL GSLFTSSRLFFVGSREGHLPSILSMIHPQL R L F S R E 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 7 0 824.45447 Q01650;H0YJ95;A0A0C4DGL4;G3V4Z6;Q9UM01;Q92536 Q01650 349 355 SLC7A5;SLC7A7;SLC7A6 Large neutral amino acids transporter small subunit 1;Y+L amino acid transporter 1;Y+L amino acid transporter 2 yes no 2 0.047302 41.502 By MS/MS By MS/MS By matching By matching By matching By matching 4 3 2 1 3 1 1.3752 1.3299 27.244 14 Median 1.5973 1.5754 20.946 4 0 Median 1.0143 0.88979 17.657 3 0 Median 1.0625 1.0933 30.438 2 0 Median 1.4733 1.3044 NaN 1 0 Median 1.6372 1.7504 24.546 3 0 Plateau 1.6005 1.3993 NaN 1 0 Median 47232000 20809000 26423000 9142100 3795000 5347100 5797800 2833400 2964500 26698000 11864000 14833000 1506500 621510 884980 3710000 1543800 2166200 378000 150680 227310 19690 2688 20531 102917;102918;102919;102920;102921;102922;102923;102924;102925;102926;102927;102928;102929;102930 104512;104513 104512 2 LFGAAEVQR AWQRLKGLALQRQGKLFGAAEVQRFNRDVD LQRQGKLFGAAEVQRFNRDVDETISWIKEK K L F Q R F 2 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 989.52943 A0A0D9SF54;Q13813 Q13813 251 259 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00034134 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 4 1 1 1.0234 0.994 34.981 12 Median 1.2987 1.2524 15.457 2 0 Median 1.2829 1.082 23.213 3 2 Median 0.87395 0.95528 58.362 3 1 Median 1.2013 1.054 8.817 2 0 Median 0.75689 0.76909 NaN 1 0 Median 0.92427 0.76273 NaN 1 0 Median 368340000 180920000 187420000 22405000 8970200 13435000 119920000 50628000 69287000 154780000 85192000 69588000 23722000 9440600 14282000 32820000 19090000 13731000 14693000 7600100 7092900 19691 264;2838 20532 102931;102932;102933;102934;102935;102936;102937;102938;102939;102940;102941;102942;102943;102944;102945;102946 104514;104515;104516;104517;104518;104519;104520;104521;104522;104523;104524;104525;104526;104527;104528;104529;104530;104531;104532 104515 19 LFGALLER EDQEEIQEAVRTCSRLFGALLERGELFVGQ AVRTCSRLFGALLERGELFVGQLPSEEMVM R L F E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 917.53345 Q9BVI4 Q9BVI4 56 63 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0078694 65.252 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 3 1.2355 1.2676 10.2 7 Median 1.3973 1.3649 NaN 1 0 Median 1.2246 1.0845 NaN 1 0 Median 1.2403 1.2819 NaN 1 0 Median 1.4578 1.2676 NaN 1 0 Median 1.1339 1.1368 11.386 3 0 Median NaN NaN NaN 0 0 Median 12537000 5511800 7024900 601280 260970 340310 428420 183590 244830 4613700 1830800 2782800 545070 225810 319250 6348200 3010600 3337600 0 0 0 19692 3854 20533 102947;102948;102949;102950;102951;102952;102953 104533;104534;104535 104535 3 LFGAPEPSTIAR PPRFQQVPTDALANKLFGAPEPSTIARSLP ANKLFGAPEPSTIARSLPTTVPESPNYRNT K L F A R S 2 1 0 0 0 0 1 1 0 1 1 0 0 1 2 1 1 0 0 0 0 0 12 0 1257.6717 Q6PKG0;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 754 765 LARP1 La-related protein 1 yes no 2 5.2871E-06 99.815 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.79151 0.78342 20.375 4 Median 0.82627 0.79551 NaN 1 0 Median 0.63774 0.53452 NaN 1 0 Median 0.75823 0.83274 NaN 1 0 Median 0.84725 0.77152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29574000 16855000 12720000 16770000 9189500 7580500 8424700 5372900 3051800 3195500 1800500 1395000 1184200 491730 692470 0 0 0 0 0 0 19693 3176 20534 102954;102955;102956;102957 104536;104537;104538 104536 3 LFGATNPK LSDTVRTVLKQEMNRLFGATNPKNFNETFL LKQEMNRLFGATNPKNFNETFLKRNSDSLP R L F P K N 1 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 8 0 846.45995 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 740 747 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.0078694 65.252 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1823 1.1017 18.409 4 Median 1.1624 1.1544 NaN 1 0 Median 1.2026 1.0515 NaN 1 0 Median 1.3876 1.4556 NaN 1 0 Median 1.0867 0.94474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10177000 4486300 5690400 2320100 989490 1330600 5103600 2355700 2747900 1578300 582730 995610 1174700 558370 616340 0 0 0 0 0 0 19694 213 20535 102958;102959;102960;102961 104539;104540;104541;104542 104542 4 LFGAVEHLQLANSYGLFR VEPGTHGRLWTGAHRLFGAVEHLQLANSYG AVEHLQLANSYGLFRRMTGLGGRPEVVLEG R L F F R R 2 1 1 0 0 1 1 2 1 0 4 0 0 2 0 1 0 0 1 1 0 0 18 0 2034.0687 Q9BU23 Q9BU23 439 456 LMF2 Lipase maturation factor 2 yes yes 3 1.2291E-13 123.97 By MS/MS 1 1.3479 1.1225 NaN 1 Median NaN NaN NaN 0 0 Median 1.3479 1.1225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6468500 2603800 3864800 0 0 0 6468500 2603800 3864800 0 0 0 0 0 0 0 0 0 0 0 0 19695 3833 20536 102962 104543;104544 104543 2 LFGDVEASLGR KTFIRGAECTERIHRLFGDVEASLGRLLDR RIHRLFGDVEASLGRLLDRLPSFQQSCRNF R L F G R L 1 1 0 1 0 0 1 2 0 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1162.5982 H3BQV3;B4DYU2;Q96MW5;A0A087X1T3;H3BSH5 H3BQV3 103 113 COG8 Conserved oligomeric Golgi complex subunit 8 yes no 2 0.058821 43.282 By MS/MS 1 0.59823 0.58846 NaN 1 Median 0.59823 0.58846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3786300 2337600 1448800 3786300 2337600 1448800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19696 610 20537 102963 104545 104545 1 LFGETDYDAFQR QEVIRRLRERGEPIRLFGETDYDAFQRLRK PIRLFGETDYDAFQRLRKIEILTPEVNKGL R L F Q R L 1 1 0 2 0 1 1 1 0 0 1 0 0 2 0 0 1 0 1 0 0 0 12 0 1460.6572 Q5T9P8;Q5T9P7;Q99633 Q5T9P8 82 93 PRPF18 Pre-mRNA-splicing factor 18 yes no 2 0.0001168 103.7 By MS/MS 1 0.72455 0.78751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72455 0.78751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7938300 4670500 3267700 0 0 0 0 0 0 7938300 4670500 3267700 0 0 0 0 0 0 0 0 0 19697 3099 20538 102964 104546 104546 1 LFGEVTRPTNSK SLSEYAFRMSRLSARLFGEVTRPTNSKSMK SARLFGEVTRPTNSKSMKVVKLFSELPLAK R L F S K S 0 1 1 0 0 0 1 1 0 0 1 1 0 1 1 1 2 0 0 1 0 0 12 1 1347.7147 Q9Y291;C9JBY7 Q9Y291 18 29 MRPS33 28S ribosomal protein S33, mitochondrial yes no 2;3 2.0732E-05 154.24 By MS/MS By MS/MS By MS/MS 1 2 2 0.87802 0.9168 15.673 5 Median 0.83487 0.81867 NaN 1 0 Median 1.3031 1.1505 0.86772 2 0 Median 0.86368 0.90155 2.3726 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44053000 21340000 22712000 13340000 7373900 5966000 25885000 11395000 14491000 4827600 2571800 2255800 0 0 0 0 0 0 0 0 0 19698 4380 20539 102965;102966;102967;102968;102969 104547;104548;104549;104550;104551;104552;104553 104552 7 LFGGFNSSDTVTSPQR RGPSAAFAPAAAEPKLFGGFNSSDTVTSPQ FGGFNSSDTVTSPQRAGPLAGGVTTFVALY K L F Q R A 0 1 1 1 0 1 0 2 0 0 1 0 0 2 1 3 2 0 0 1 0 0 16 0 1711.8166 P12931 P12931 63 78 SRC Proto-oncogene tyrosine-protein kinase Src yes yes 2 8.8953E-10 131.37 By MS/MS By matching By MS/MS 1 2 1 0.87851 0.83758 17.54 4 Median 0.75454 0.72508 NaN 1 0 Median 1.046 0.92578 22.631 2 0 Median 0.86601 0.88928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13589000 7537600 6051700 7077200 4110000 2967300 934700 493800 440900 5577400 2933900 2643500 0 0 0 0 0 0 0 0 0 19699 1984 20540 102970;102971;102972;102973 104554;104555;104556;104557 104554 4 LFGGNFAHQASVAR LEQYFHDSDLAQFMRLFGGNFAHQASVARV RLFGGNFAHQASVARVVGQQGRGRAGIEAS R L F A R V 3 1 1 0 0 1 0 2 1 0 1 0 0 2 0 1 0 0 0 1 0 0 14 0 1473.7477 A0A2R8YGD1;O14773;A0A2R8YD45;A0A2R8Y7I4;A0A2R8YDY1 A0A2R8YGD1 153 166 TPP1 Tripeptidyl-peptidase 1 yes no 2;3 1.0013E-34 174.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 2 1 0.63843 0.69241 136.47 13 Median 0.53614 0.53227 98.142 3 1 Median 0.77033 0.66149 29.119 2 1 Median 0.99934 0.97723 112.4 3 1 Plateau 0.19679 0.16875 321.88 2 2 Median 1.6228 1.6768 3.5351 2 0 Median 1.838 1.5844 NaN 1 0 Median 440890000 347880000 93007000 126990000 97438000 29548000 10685000 6252000 4433500 47635000 30030000 17605000 242420000 209160000 33264000 9974100 3841600 6132500 3189100 1165000 2024100 19700 402 20541 102974;102975;102976;102977;102978;102979;102980;102981;102982;102983;102984;102985;102986 104558;104559;104560;104561;104562;104563;104564;104565;104566 104565 9 LFGHSSTSALSAILR RREQEARQRQLMHERLFGHSSTSALSAILR LFGHSSTSALSAILRSPAFTSRLSGNRGVQ R L F L R S 2 1 0 0 0 0 0 1 1 1 3 0 0 1 0 4 1 0 0 0 0 0 15 0 1558.8467 Q7Z6Z7 Q7Z6Z7 3112 3126 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 7.9455E-07 83.045 By MS/MS By matching 3 1 1.2749 1.1423 21.824 4 Median 1.0762 1.0245 26.108 3 1 Median 1.5103 1.2737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39196000 18924000 20272000 36960000 18012000 18948000 2235700 912070 1323700 0 0 0 0 0 0 0 0 0 0 0 0 19701 3253 20542 102987;102988;102989;102990 104567;104568;104569;104570 104570 4 LFGNILDK VRECARSQGFPDTYRLFGNILDKHRQVGNA GFPDTYRLFGNILDKHRQVGNAVPPPLAKA R L F D K H 0 0 1 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 918.51747 P26358;K7ENW7 P26358 1565 1572 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0096345 60.436 By matching By MS/MS By matching 1 5 5 1.1037 1.0796 17.582 11 Median 1.1558 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0209 1.0796 19.471 5 0 Median 1.1052 0.99858 18.934 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29159000 13192000 15966000 2140300 815760 1324500 0 0 0 23257000 10702000 12556000 3760700 1674800 2086000 0 0 0 0 0 0 19702 2142 20543 102991;102992;102993;102994;102995;102996;102997;102998;102999;103000;103001 104571;104572 104572 2 LFGNILDKHR VRECARSQGFPDTYRLFGNILDKHRQVGNA PDTYRLFGNILDKHRQVGNAVPPPLAKAIG R L F H R Q 0 1 1 1 0 0 0 1 1 1 2 1 0 1 0 0 0 0 0 0 0 0 10 1 1211.6775 P26358;K7ENW7 P26358 1565 1574 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 0.00022644 107.79 By MS/MS 1 1.0912 1.3077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0912 1.3077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15696000 8551300 7144500 0 0 0 0 0 0 15696000 8551300 7144500 0 0 0 0 0 0 0 0 0 19703 2142 20544 103002 104573 104573 1 LFGPVDSEQLSR GDVRQNPCGSKACRRLFGPVDSEQLSRDCD CRRLFGPVDSEQLSRDCDALMAGCIQEARE R L F S R D 0 1 0 1 0 1 1 1 0 0 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1346.683 P38936 P38936 21 32 CDKN1A Cyclin-dependent kinase inhibitor 1 yes yes 2 0.00035872 81.017 By MS/MS 1 0.47571 0.47243 NaN 1 Median 0.47571 0.47243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4432800 3253200 1179700 4432800 3253200 1179700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19704 2279 20545 103003 104574 104574 1 LFGPYVWGR EYNGVIEEFLATGEKLFGPYVWGRYDLLFM LATGEKLFGPYVWGRYDLLFMPPSFPFGGM K L F G R Y 0 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 1 1 1 0 0 9 0 1093.5709 Q9H4A4;C9JMZ3;H7C2T3 Q9H4A4 277 285 RNPEP Aminopeptidase B yes no 2 0.0097565 65.038 By MS/MS 1 0.77826 0.73672 NaN 1 Median 0.77826 0.73672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16726000 8617200 8108900 16726000 8617200 8108900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19705 3964 20546 103004 104575 104575 1 LFGYEMAEFK KEGDVLTPEQARVLKLFGYEMAEFKVTIKY ARVLKLFGYEMAEFKVTIKYMWDSQSGRFQ K L F F K V 1 0 0 0 0 0 2 1 0 0 1 1 1 2 0 0 0 0 1 0 0 0 10 0 1233.574 Q9UKD2 Q9UKD2 192 201 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.014124 39.148 By MS/MS By matching By matching By matching By MS/MS 2 1 1 1 2 1.3896 1.2916 18.305 7 Median 1.5624 1.4947 20.647 2 0 Median NaN NaN NaN 0 0 Median 1.425 1.3616 NaN 1 0 Median 1.612 1.3452 NaN 1 0 Median 1.0403 1.0593 NaN 1 0 Median 1.299 1.0665 6.4585 2 0 Median 30200000 13186000 17014000 7315800 2862600 4453100 0 0 0 2988000 1206600 1781300 103030 45715 57316 9443800 4546600 4897200 10349000 4524600 5824600 19706 4308 20547 103005;103006;103007;103008;103009;103010;103011 104576;104577 104577 2 LFHEVVQAFR VERWKQAAKQRLTPKLFHEVVQAFRAAVAT RLTPKLFHEVVQAFRAAVATTRGDQESAEA K L F F R A 1 1 0 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1244.6666 Q9Y3T9 Q9Y3T9 169 178 NOC2L Nucleolar complex protein 2 homolog yes yes 2;3 3.0232E-07 128.61 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 4 1 1.3115 1.3029 10.546 11 Median 1.3251 1.3164 NaN 1 0 Median 1.6307 1.4417 NaN 1 0 Median 1.2913 1.3653 1.9429 2 0 Median 1.5806 1.3586 5.9161 2 0 Median 1.1134 1.1237 6.5191 4 2 Median 1.4386 1.171 NaN 1 0 Median 77594000 33288000 44307000 1180500 450220 730330 1275000 446190 828780 23355000 9806900 13548000 2913300 1135800 1777400 47669000 20867000 26802000 1202000 581650 620300 19707 4433 20548 103012;103013;103014;103015;103016;103017;103018;103019;103020;103021;103022;103023 104578;104579;104580;104581;104582;104583;104584;104585;104586;104587;104588 104580 11 LFHQAFISFR KEIQKLGADYGLDARLFHQAFISFRNYIMQ GLDARLFHQAFISFRNYIMQSHSLDVDIHI R L F F R N 1 1 0 0 0 1 0 0 1 1 1 0 0 3 0 1 0 0 0 0 0 0 10 0 1264.6717 Q8IYB8 Q8IYB8 119 128 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 3 0.014058 27.481 By MS/MS By matching 1 1 1.4123 1.3238 31.267 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99899 1.0612 NaN 1 0 Median 1.9966 1.6514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3204300 1544000 1660300 0 0 0 0 0 0 3058500 1503100 1555400 145810 40889 104920 0 0 0 0 0 0 19708 3342 20549 103024;103025 104589 104589 1 LFHTAPNVPHYAK GFSVVRSYCGHGIHKLFHTAPNVPHYAKNK HKLFHTAPNVPHYAKNKAVGVMKSGHVFTI K L F A K N 2 0 1 0 0 0 0 0 2 0 1 1 0 1 2 0 1 0 1 1 0 0 13 0 1493.7779 P53582;H0Y955 P53582 299 311 METAP1 Methionine aminopeptidase 1 yes no 2;3 1.5549E-05 87.001 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 0.93326 0.90387 10.481 6 Median 0.84085 0.78498 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95619 0.98962 0.29731 2 0 Median 0.93802 0.79774 NaN 1 0 Median 0.89501 0.90387 6.4785 2 0 Median NaN NaN NaN 0 0 Median 64455000 33352000 31104000 5044500 2772500 2272000 0 0 0 39206000 20688000 18518000 7384000 3552100 3832000 12821000 6338600 6482300 0 0 0 19709 2468 20550 103026;103027;103028;103029;103030;103031 104590;104591;104592;104593;104594;104595;104596;104597;104598 104593 9 LFHVRPVTQTDVYR DKEQSNPYMVLDIDKLFHVRPVTQTDVYRA KLFHVRPVTQTDVYRADAKEIPRIFQILYA K L F Y R A 0 2 0 1 0 1 0 0 1 0 1 0 0 1 1 0 2 0 1 3 0 0 14 1 1729.9264 O75116;E9PF63;Q14DU5 O75116 1205 1218 ROCK2 Rho-associated protein kinase 2 yes no 3 6.7816E-05 77.527 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.93461 0.98083 16.344 4 Median 0.76416 0.8172 NaN 1 1 Median 1.1664 1.1779 NaN 1 0 Median 0.87503 1.0642 NaN 1 0 Median 0.99826 0.90399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24423000 12253000 12170000 9093700 5061800 4031900 3733900 1541700 2192200 9976400 4957000 5019400 1618500 692320 926190 0 0 0 0 0 0 19710 1644 20551 103032;103033;103034;103035 104599;104600;104601;104602 104601 4 LFIGGLNTETNEK ______________________________ GKLFIGGLNTETNEKALEAVFGKYGRIVEV K L F E K A 0 0 2 0 0 0 2 2 0 1 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1434.7355 P38159;H3BT71;H0Y6E7;H3BR27;H3BNC1;Q96E39;A0A1B0GUK8 P38159 10 22 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 2.7667E-40 213.31 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 8 2 1.0878 1.0457 12.262 20 Median 0.98883 0.94384 32.165 2 0 Median 1.1844 1.025 6.4716 2 0 Median 1.0308 0.98398 7.4788 4 1 Median 1.3741 1.2015 1.8114 2 0 Median 1.0197 1.0457 10.932 8 5 Median 1.2841 1.0505 2.4908 2 0 Median 2053100000 986390000 1066700000 13752000 6403200 7348400 2068400 1065100 1003300 161780000 81233000 80546000 190170000 78365000 111810000 1606700000 785110000 821590000 78630000 34212000 44418000 19711 2273;3632 20552 103036;103037;103038;103039;103040;103041;103042;103043;103044;103045;103046;103047;103048;103049;103050;103051;103052;103053;103054;103055 104603;104604;104605;104606;104607;104608;104609;104610;104611;104612;104613;104614;104615;104616;104617;104618;104619;104620;104621;104622 104616 20 LFIGGLNVQTSESGLR ______________________________ FIGGLNVQTSESGLRGHFEAFGTLTDCVVV K L F L R G 0 1 1 0 0 1 1 3 0 1 3 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 Q13151 Q13151 9 24 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 4.5568E-14 163.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 2 6 1 1.2637 1.066 12.385 17 Median 1.2504 1.217 9.4588 2 1 Median 1.3416 1.1459 5.0444 5 0 Median 0.95348 0.91909 NaN 1 0 Median 1.3859 1.1457 10.133 2 0 Median 0.98413 0.98602 11.291 6 3 Median 1.2637 0.99379 NaN 1 0 Median 924750000 440090000 484660000 14217000 6305100 7912100 14874000 7044300 7830100 284400000 141950000 142460000 3247400 1339500 1908000 555110000 261300000 293810000 52904000 22159000 30745000 19712 2790 20553 103056;103057;103058;103059;103060;103061;103062;103063;103064;103065;103066;103067;103068;103069;103070;103071;103072 104623;104624;104625;104626;104627;104628;104629;104630;104631;104632;104633;104634;104635;104636;104637;104638;104639;104640;104641;104642;104643;104644;104645;104646 104632 24 LFIGGLPNYLNDDQVK VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV FIGGLPNYLNDDQVKELLTSFGPLKAFNLV K L F V K E 0 0 2 2 0 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 16 0 1804.9359 P26368;K7ENG2 P26368 261 276 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 5.8317E-10 150.09 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 2 2 1 0.93617 0.82552 11.762 12 Median 0.93038 0.89817 NaN 1 0 Median 1.027 0.88694 8.2008 3 1 Median 0.83891 0.81187 3.3768 3 2 Median 1.0343 0.8985 5.6746 2 0 Median 0.68286 0.67592 13.64 2 0 Median 0.95054 0.77729 NaN 1 0 Median 1080400000 537110000 543310000 2195300 1102100 1093200 13455000 6651000 6803700 518360000 263900000 254470000 512760000 249560000 263190000 16717000 8547000 8170500 16936000 7347000 9589100 19713 2143 20554 103073;103074;103075;103076;103077;103078;103079;103080;103081;103082;103083;103084 104647;104648;104649;104650;104651;104652;104653;104654;104655;104656;104657;104658;104659;104660 104648 14 LFIGGLSFETTDDSLR GEEGHDPKEPEQLRKLFIGGLSFETTDDSL FIGGLSFETTDDSLREHFEKWGTLTDCVVM K L F L R E 0 1 0 2 0 0 1 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1769.8836 P51991 P51991 37 52 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 2.1377E-10 160.15 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.2359 1.1529 23.015 5 Median NaN NaN NaN 0 0 Median 1.1824 1.159 11.064 2 0 Median 1.0558 1.1529 NaN 1 0 Median 1.3629 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4228 1.9018 NaN 1 0 Median 36853000 16686000 20168000 0 0 0 20092000 8929300 11162000 15922000 7509100 8412400 303390 122400 180990 0 0 0 536900 124860 412040 19714 2446 20555 103085;103086;103087;103088;103089 104661;104662;104663;104664;104665 104662 5 LFIGGLSFETTDDSLREHFEK GEEGHDPKEPEQLRKLFIGGLSFETTDDSL SFETTDDSLREHFEKWGTLTDCVVMRDPQT K L F E K W 0 1 0 2 0 0 3 2 1 1 3 1 0 3 0 2 2 0 0 0 0 0 21 1 2440.1911 P51991 P51991 37 57 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 9.1487E-07 46.362 By MS/MS By MS/MS By MS/MS By matching 2 2 5 2 1.0744 1.1796 17.095 11 Median NaN NaN NaN 0 0 Median 1.4989 1.4059 29.181 2 0 Median 1.1044 1.2559 8.8613 2 0 Median NaN NaN NaN 0 0 Median 0.94568 1.0514 11.096 5 0 Median 1.4126 1.2876 1.9058 2 0 Median 35851000 16319000 19532000 0 0 0 6702500 2474600 4228000 14466000 6759400 7706500 0 0 0 13245000 6453800 6791600 1436800 631120 805650 19715 2446 20556 103090;103091;103092;103093;103094;103095;103096;103097;103098;103099;103100 104666;104667;104668;104669;104670 104670 5 LFIGGLSFETTDESLR MSKSESPKEPEQLRKLFIGGLSFETTDESL FIGGLSFETTDESLRSHFEQWGTLTDCVVM K L F L R S 0 1 0 1 0 0 2 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1783.8992 P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;F8W646 P09651 16 31 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 4.2297E-36 211.46 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 4 3 1 6 10 1.0883 1.0069 18.475 25 Median 1.0883 1.115 NaN 1 0 Median 1.309 1.1135 31.356 4 0 Linear 1.0189 0.99463 4.8411 3 0 Median 1.2135 1.0203 NaN 1 0 Median 1.0253 1.072 4.6352 6 0 Median 1.1848 0.94666 16.841 10 0 Median 395970000 186160000 209810000 692700 288860 403840 54510000 23584000 30925000 181670000 87461000 94207000 341110 139100 202020 100310000 48374000 51937000 58449000 26310000 32139000 19716 1919 20557 103101;103102;103103;103104;103105;103106;103107;103108;103109;103110;103111;103112;103113;103114;103115;103116;103117;103118;103119;103120;103121;103122;103123;103124;103125 104671;104672;104673;104674;104675;104676;104677;104678;104679;104680;104681;104682;104683;104684;104685;104686;104687;104688;104689;104690;104691;104692;104693;104694;104695;104696;104697;104698;104699;104700 104675 30 LFIGGLSFETTEESLR VPLERKKREKEQFRKLFIGGLSFETTEESL FIGGLSFETTEESLRNYYEQWGKLTDCVVM K L F L R N 0 1 0 0 0 0 3 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1797.9149 P22626;A0A087WUI2 P22626 23 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 1.2308E-10 152.14 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 9 1.1684 1.0063 17.336 19 Median NaN NaN NaN 0 0 Median 1.2704 1.0816 3.6829 2 0 Median 1.0668 1.0332 3.2614 3 0 Median NaN NaN NaN 0 0 Median 1.0348 1.0542 15.345 5 0 Median 1.2175 0.99162 18.814 9 0 Median 300830000 139480000 161340000 0 0 0 27172000 12064000 15108000 91075000 43055000 48021000 0 0 0 80420000 39387000 41033000 102160000 44979000 57183000 19717 2103 20558 103126;103127;103128;103129;103130;103131;103132;103133;103134;103135;103136;103137;103138;103139;103140;103141;103142;103143;103144 104701;104702;104703;104704;104705;104706;104707;104708;104709;104710;104711;104712;104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726;104727;104728;104729;104730 104719 30 LFIGMISK KPADSEKNNAVEDRKLFIGMISKKCTENDI NAVEDRKLFIGMISKKCTENDIRVMFSSFG K L F S K K 0 0 0 0 0 0 0 1 0 2 1 1 1 1 0 1 0 0 0 0 0 0 8 0 907.52011 G5EA30;Q92879 G5EA30 137 144 CELF1 CUGBP Elav-like family member 1 yes no 2 0.029451 47.082 By MS/MS 2 1.1022 1.091 12.527 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1022 1.091 12.527 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10772000 5216100 5555800 0 0 0 0 0 0 10772000 5216100 5555800 0 0 0 0 0 0 0 0 0 19718 1133 20559 103145;103146 104731;104732;104733 104732 3 LFIGNLPR ______________________________ ______________________________ K L F P R E 0 1 1 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 928.54944 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 4 11 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0032511 99.919 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 0.99982 0.9752 18.226 6 Median 0.87643 0.86997 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0134 1.0562 1.7741 2 1 Median 1.0251 0.91178 NaN 1 0 Median 1.0518 1.06 NaN 1 0 Median 0.8464 0.66584 NaN 1 0 Median 74998000 39277000 35720000 7068700 3882700 3186000 0 0 0 46634000 23992000 22642000 1326900 664330 662570 19678000 10613000 9065100 290680 126140 164540 19719 3870;3780 20560 103147;103148;103149;103150;103151;103152 104734;104735;104736;104737;104738;104739;104740;104741;104742 104737 9 LFIVDAR LVQKFNHSHRISDIRLFIVDARPAMAATSF SHRISDIRLFIVDARPAMAATSFILMTTFP R L F A R P 1 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 832.48069 Q9UNZ2 Q9UNZ2 323 329 NSFL1C NSFL1 cofactor p47 yes yes 2 0.0080733 86.866 By MS/MS 1 1.1235 1.0955 NaN 1 Median 1.1235 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5929400 2528600 3400900 5929400 2528600 3400900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19720 4353 20561 103153 104743 104743 1 LFIVESNSSSSTR KINPDEREEMKVSAKLFIVESNSSSSTRSA AKLFIVESNSSSSTRSAVDMACSVLGVAQL K L F T R S 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 5 1 0 0 1 0 0 13 0 1425.71 P48507 P48507 95 107 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 2 9.2781E-25 147.74 By MS/MS 2 1.1008 1.0301 NaN 1 Median 1.1008 1.0301 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19485000 9617900 9867200 19485000 9617900 9867200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19721 2361 20562 103154;103155 104744;104745 104745 2 LFIYNPTTGEFLGR KNEKKSLNQSLAEWKLFIYNPTTGEFLGRT KLFIYNPTTGEFLGRTAKSWGLILLFYLVF K L F G R T 0 1 1 0 0 0 1 2 0 1 2 0 0 2 1 0 2 0 1 0 0 0 14 0 1626.8406 P54709;H7C547;F8WBY4 P54709 18 31 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2 2.2941E-19 150.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1.0368 0.98847 25.854 8 Median 0.90048 0.86478 36.278 4 2 Median 1.2056 1.0674 15.44 2 0 Median 0.9396 1.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3356 1.1288 NaN 1 1 Median 134490000 49356000 85138000 56761000 24611000 32150000 74253000 23230000 51024000 2037300 1028900 1008400 0 0 0 0 0 0 1441900 486420 955460 19722 2485 20563 103156;103157;103158;103159;103160;103161;103162;103163;103164 104746;104747;104748;104749;104750;104751;104752;104753;104754 104753 9 LFKEVDGEGKPYYEVR QDFLDSQNLSAYNTRLFKEVDGEGKPYYEV FKEVDGEGKPYYEVRLASVLGSEPSLDSEV R L F V R L 0 1 0 1 0 0 3 2 0 0 1 2 0 1 1 0 0 0 2 2 0 0 16 2 1927.968 G3V1D3;G3V180;Q9NY33;E9PQ14 G3V1D3 219 234 DPP3 Dipeptidyl peptidase 3 yes no 3 0.0013732 34.612 By MS/MS 1 1.1339 1.2489 NaN 1 Median 1.1339 1.2489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14302000 5555500 8746000 14302000 5555500 8746000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19723 1102 20564 103165 104755;104756 104755 2 LFKPGQEAVK DVCSAQGVRGYPTLKLFKPGQEAVKYQGPR YPTLKLFKPGQEAVKYQGPRDFQTLENWML K L F V K Y 1 0 0 0 0 1 1 1 0 0 1 2 0 1 1 0 0 0 0 1 0 0 10 1 1115.6339 Q8NBS9 Q8NBS9 141 150 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.058418 41.448 By matching By MS/MS By matching 1 2 1 0.87185 0.81488 15.54 4 Median 0.89791 0.86077 NaN 1 0 Median 0.92005 0.85129 13.931 2 0 Median NaN NaN NaN 0 0 Median 0.68967 0.65506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11263000 5750600 5512000 6472200 3392200 3080000 4003600 1954400 2049200 0 0 0 786790 404020 382770 0 0 0 0 0 0 19724 3410 20565 103166;103167;103168;103169 104757;104758 104757 2 LFKPPQPPAR QSRGEPPLPEEDLSKLFKPPQPPARMDSLL EDLSKLFKPPQPPARMDSLLIAGQINTYCQ K L F A R M 1 1 0 0 0 1 0 0 0 0 1 1 0 1 4 0 0 0 0 0 0 0 10 1 1149.6659 B3KS98;O15372;A0A087WZK9 B3KS98 318 327 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.051843 43.246 By MS/MS 1 2.1456 2.4384 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1456 2.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5421000 2949900 2471100 0 0 0 0 0 0 5421000 2949900 2471100 0 0 0 0 0 0 0 0 0 19725 584 20566 103170 104759 104759 1 LFKQDTSSSTTHLAQQLKQER RTPIITPNTKAIQERLFKQDTSSSTTHLAQ SSSTTHLAQQLKQERQKELACLRGRFDKGN R L F E R Q 1 1 0 1 0 4 1 0 1 0 3 2 0 1 0 3 3 0 0 0 0 0 21 2 2445.2612 Q9NQW6 Q9NQW6 411 431 ANLN Actin-binding protein anillin yes yes 4 0.00037093 28.505 By MS/MS 1 1.6457 1.8753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6457 1.8753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8668500 2772900 5895600 0 0 0 0 0 0 8668500 2772900 5895600 0 0 0 0 0 0 0 0 0 19726 4069 20567 103171 104760;104761 104760 2 LFLAGYDPTPTMR IMDGAPVKGESIPIRLFLAGYDPTPTMRDV IRLFLAGYDPTPTMRDVNKKFSVRYFLNLV R L F M R D 1 1 0 1 0 0 0 1 0 0 2 0 1 1 2 0 2 0 1 0 0 0 13 0 1480.7384 O75436 O75436 250 262 VPS26A Vacuolar protein sorting-associated protein 26A yes yes 2 0.00012434 96.89 By MS/MS By MS/MS 1 1 0.18248 0.17105 18.937 2 Median 0.14838 0.14962 NaN 1 1 Median 0.22442 0.19556 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157740000 132050000 25693000 136840000 116490000 20352000 20903000 15562000 5340900 0 0 0 0 0 0 0 0 0 0 0 0 19727 1671 20568 103172;103173 104762;104763 104763 2 LFLAGYELTPTMR IMDGAPVRGESIPIRLFLAGYELTPTMRDI IRLFLAGYELTPTMRDINKKFSVRYYLNLV R L F M R D 1 1 0 0 0 0 1 1 0 0 3 0 1 1 1 0 2 0 1 0 0 0 13 0 1510.7854 Q4G0F5 Q4G0F5 248 260 VPS26B Vacuolar protein sorting-associated protein 26B yes yes 2 0.00012318 84.17 By MS/MS By matching 2 1 1.1266 0.98161 38.631 3 Plateau 0.69631 0.70169 47.259 2 0 Median 1.1266 0.98161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10049000 4637700 5411100 3738300 2260200 1478100 6310500 2377500 3933100 0 0 0 0 0 0 0 0 0 0 0 0 19728 3019 20569 103174;103175;103176 104764 104764 1 LFLEDQLK QELTNIYEELNVFERLFLEDQLKNLKIRTN ELNVFERLFLEDQLKNLKIRTNRIQRFIQN R L F L K N 0 0 0 1 0 1 1 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2911 2918 SYNE2 Nesprin-2 yes no 2 0.0066368 82.671 By MS/MS 1 0.85622 0.91547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85622 0.91547 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11196000 5682200 5514000 0 0 0 0 0 0 11196000 5682200 5514000 0 0 0 0 0 0 0 0 0 19729 3521 20570 103177 104765 104765 1 LFLEFER KELFEGVQKWEETWRLFLEFERKASDPNRF QKWEETWRLFLEFERKASDPNRFTNRGGNL R L F E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 7 0 952.50182 O43663;H0YL53 O43663 364 370 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.006405 93.262 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 3 3 2 1.2034 1.1472 18.503 13 Median 1.401 1.4214 NaN 1 0 Median 1.2422 1.091 NaN 1 0 Median 1.1007 1.1481 27.718 3 0 Median 1.2918 1.1226 12.715 3 0 Median 1.1005 1.1472 6.8616 3 0 Median 1.3878 1.2079 37.714 2 0 Median 26795000 11860000 14935000 1156900 500890 656000 651000 320020 330980 15051000 6466600 8584900 2205500 893660 1311800 6853000 3281800 3571200 877070 396960 480110 19730 1581 20571 103178;103179;103180;103181;103182;103183;103184;103185;103186;103187;103188;103189;103190 104766;104767;104768;104769;104770;104771;104772;104773 104771 8 LFLELEPQVR RQELQRNVISSSSFKLFLELEPQVRDIIFK SSSFKLFLELEPQVRDIIFKFYESKYASCL K L F V R D 0 1 0 0 0 1 2 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 10 0 1242.6972 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070 C9JFE4 298 307 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.00064971 72.547 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.71272 0.64829 33.882 8 Median 0.70573 0.7009 20.807 2 1 Median 0.70399 0.59964 47.325 2 0 Median 0.46421 0.46261 50.35 2 0 Median 0.94833 0.82204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78524 0.63635 NaN 1 0 Median 64963000 33132000 31831000 7789500 4280100 3509400 48503000 23635000 24869000 7202400 4417500 2784800 701770 344020 357750 0 0 0 766200 455420 310790 19731 695 20572 103191;103192;103193;103194;103195;103196;103197;103198 104774;104775;104776;104777;104778;104779;104780;104781 104780 8 LFLESSDANPVR FALRYFKDTSPVFQRLFLESSDANPVRYGR FQRLFLESSDANPVRYGRRRMKLRDLMEAA R L F V R Y 1 1 1 1 0 0 1 0 0 0 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1346.683 Q9NU22;Q5T795 Q9NU22 126 137 MDN1 Midasin yes no 2 2.3192E-09 171.36 By MS/MS By MS/MS By matching 1 1 1 1.204 1.048 19.889 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76379 0.79833 NaN 1 0 Median 1.204 1.048 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4026 1.1759 NaN 1 0 Median 39737000 24558000 15179000 0 0 0 0 0 0 37396000 23551000 13845000 1591100 695180 895880 0 0 0 749530 311440 438090 19732 4112 20573 103199;103200;103201 104782;104783;104784;104785 104782 4 LFLFHTSLPIAEAPGK QAGMEALKAAECAGKLFLFHTSLPIAEAPG FLFHTSLPIAEAPGKLKNRDDRKLINTDKE K L F G K L 2 0 0 0 0 0 1 1 1 1 3 1 0 2 2 1 1 0 0 0 0 0 16 0 1739.961 P53992;G5EA31 P53992 639 654 SEC24C Protein transport protein Sec24C yes no 2;3 0.00086165 41.283 By MS/MS By matching By matching By matching 3 3 2 1 0.79176 0.76782 17.06 9 Median 0.78927 0.796 9.0072 3 0 Median 0.87931 0.76782 24.023 3 0 Median 0.71105 0.76174 22.572 2 0 Median 0.79176 0.68971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11372000 6052400 5319800 3187600 1634000 1553600 4293800 2232500 2061300 3730300 2081800 1648400 160470 104030 56435 0 0 0 0 0 0 19733 1134 20574 103202;103203;103204;103205;103206;103207;103208;103209;103210 104786;104787 104787 2 LFLINEQSPR PIAFAAKGINKLLNKLFLINEQSPRASEET KLLNKLFLINEQSPRASEETLLGISKKAKQ K L F P R A 0 1 1 0 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1215.6612 E9PFF8;Q6NW34 E9PFF8 188 197 C3orf17 Uncharacterized protein C3orf17 yes no 2 0.0012522 107.47 By MS/MS 1 1.5168 1.6129 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5168 1.6129 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6972000 2977000 3994900 0 0 0 0 0 0 6972000 2977000 3994900 0 0 0 0 0 0 0 0 0 19734 919 20575 103211 104788 104788 1 LFLLPHKDQR GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV TTVLRLFLLPHKDQRQMFFVISLDPPIKQG R L F Q R Q 0 1 0 1 0 1 0 0 1 0 3 1 0 1 1 0 0 0 0 0 0 0 10 1 1265.7244 Q08945;E9PMD4 Q08945 242 251 SSRP1 FACT complex subunit SSRP1 yes no 2;3 0.00016246 95.502 By MS/MS By MS/MS 4 2 1.0933 1.0867 14.171 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0933 1.1628 14.43 4 1 Median 1.1075 0.98159 7.1231 2 1 Median 47569000 21572000 25997000 0 0 0 0 0 0 0 0 0 0 0 0 41406000 18859000 22547000 6162800 2712600 3450200 19735 2743 20576 103212;103213;103214;103215;103216;103217 104789;104790;104791;104792;104793 104791 5 LFLNETQTQEITEDIPVK YEAAKVFGLRSRKLKLFLNETQTQEITEDI NETQTQEITEDIPVKTLNMKTVYVSVLPTT K L F V K T 0 0 1 1 0 2 3 0 0 2 2 1 0 1 1 0 3 0 0 1 0 0 18 0 2117.0892 P41252;J3KR24 P41252 1227 1244 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 0.00013593 46.592 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.87708 0.85444 38.21 5 Median 0.93761 0.93285 12.416 2 0 Median 0.46193 0.40782 NaN 1 0 Median 0.95788 1.0338 NaN 1 0 Median 0.84214 0.72074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9544500 4819200 4725300 6349100 3208600 3140500 605180 332630 272550 2273300 1132900 1140400 316870 145070 171800 0 0 0 0 0 0 19736 2302 20577 103218;103219;103220;103221;103222 104794;104795;104796;104797;104798 104794 5 LFLQFVTGSPR FLFEILSSFDNEQQRLFLQFVTGSPRLPVG EQQRLFLQFVTGSPRLPVGGFRSLNPPLTI R L F P R L 0 1 0 0 0 1 0 1 0 0 2 0 0 2 1 1 1 0 0 1 0 0 11 0 1263.6976 Q14669;H7C2Y1 Q14669 1913 1923 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 0.0054074 46.158 By matching By MS/MS By matching 1 1 1 1.007 1.067 10.352 3 Plateau 1.0359 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96456 1.067 NaN 1 0 Median 1.007 0.88172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5649400 2807000 2842400 1229700 581020 648650 0 0 0 3914200 1970100 1944100 505520 255940 249590 0 0 0 0 0 0 19737 2886 20578 103223;103224;103225 104799;104800 104800 2 LFLQGPK DFTATFGPLDSLNTRLFLQGPKIAEEFEVE PLDSLNTRLFLQGPKIAEEFEVELERGKTL R L F P K I 0 0 0 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 7 0 801.47487 P11498 P11498 1037 1043 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.027151 52.231 By MS/MS 1 1.1327 0.96794 NaN 1 Median NaN NaN NaN 0 0 Median 1.1327 0.96794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4993200 1996900 2996300 0 0 0 4993200 1996900 2996300 0 0 0 0 0 0 0 0 0 0 0 0 19738 1967 20579 103226 104801;104802 104802 2 LFLSMDPVHGDISR IDGSTPTITPNPNFRLFLSMDPVHGDISRA RLFLSMDPVHGDISRAMRNRGLEIYISGEG R L F S R A 0 1 0 2 0 0 0 1 1 1 2 0 1 1 1 2 0 0 0 1 0 0 14 0 1585.7923 Q9NU22 Q9NU22 2288 2301 MDN1 Midasin yes yes 2;3 4.7499E-05 93.258 By matching By MS/MS By matching By matching 1 3 1 1 0.90236 0.91424 58.155 6 Median NaN NaN NaN 0 0 Median 1.1208 0.94148 NaN 1 0 Median 0.7647 0.81495 81.247 3 2 Median 1.096 0.9501 NaN 1 0 Median 0.86361 0.8878 NaN 1 0 Median NaN NaN NaN 0 0 Median 70700000 50689000 20011000 0 0 0 1877900 919470 958380 67996000 49330000 18666000 88183 46487 41696 737880 393310 344570 0 0 0 19739 4112 20580;20581 103227;103228;103229;103230;103231;103232 104803;104804;104805;104806 104805 1882 4 LFLSYDYAVK KIFSQETLTKAQILKLFLSYDYAVKKPWLA AQILKLFLSYDYAVKKPWLAYPHYKPPEKC K L F V K K 1 0 0 1 0 0 0 0 0 0 2 1 0 1 0 1 0 0 2 1 0 0 10 0 1217.6332 Q9UHG3 Q9UHG3 421 430 PCYOX1 Prenylcysteine oxidase 1 yes yes 2 0.039547 31.229 By MS/MS By matching By matching 1 1 1 1.1186 1.1128 27.329 3 Median 1.1186 1.0567 NaN 1 0 Median 1.9554 1.7372 NaN 1 0 Median 1.0806 1.1128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7728600 3614200 4114400 4895900 2288500 2607400 579950 231320 348630 2252700 1094400 1158300 0 0 0 0 0 0 0 0 0 19740 4279 20582 103233;103234;103235 104807 104807 1 LFLTMEINPK LEKKLHSLQPHACFRLFLTMEINPKVPVNL HACFRLFLTMEINPKVPVNLLRAGRIFVFE R L F P K V 0 0 1 0 0 0 1 0 0 1 2 1 1 1 1 0 1 0 0 0 0 0 10 0 1204.6526 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4124 4133 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0037777 69.598 By MS/MS By MS/MS 1 2 0.85134 0.91063 3.3294 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85134 0.91063 3.3294 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19632000 11371000 8261100 0 0 0 0 0 0 19632000 11371000 8261100 0 0 0 0 0 0 0 0 0 19741 2865 20583;20584 103236;103237;103238 104808;104809;104810 104809 1555 3 LFLVQLQEK PYIPAHITKPKEHKKLFLVQLQEKALFAVP PKEHKKLFLVQLQEKALFAVPKNYKLVAAP K L F E K A 0 0 0 0 0 2 1 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1116.6543 O43809;H3BND3 O43809 174 182 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 0.0008527 94.302 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 2 3 1.3403 1.138 13.467 14 Median 1.1162 1.0419 NaN 1 0 Median 1.3756 1.1734 5.7611 2 0 Median 1.0418 1.0589 12.951 3 0 Median 1.4363 1.1425 10.03 3 0 Median 1.1656 1.2108 2.5009 2 0 Median 1.3783 1.1335 23.831 3 0 Median 183110000 86148000 96959000 11952000 5757700 6194000 901710 396490 505220 132270000 63787000 68483000 7560200 3137400 4422800 21050000 9538800 11511000 9374200 3531400 5842900 19742 1592 20585 103239;103240;103241;103242;103243;103244;103245;103246;103247;103248;103249;103250;103251;103252 104811;104812;104813;104814;104815;104816;104817;104818;104819;104820;104821;104822 104811 12 LFMAQALQEYNN YCQNIKEFTAQNLGKLFMAQALQEYNN___ LGKLFMAQALQEYNN_______________ K L F N N - 2 0 2 0 0 2 1 0 0 0 2 0 1 1 0 0 0 0 1 0 0 0 12 0 1440.6708 B3KS98;O15372;A0A087WZK9 B3KS98 355 366 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.014834 54.157 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34405000 0 0 24624000 0 0 9781700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19743 584 20586 103253;103254 104823;104824 104824 2 LFMEMNQK HWNKTIHGLIYNALKLFMEMNQKLFDDCTQ LIYNALKLFMEMNQKLFDDCTQQYKAEKQK K L F Q K L 0 0 1 0 0 1 1 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 8 0 1039.4831 E9PFR3;Q14738;H0Y8C4;H7C5Q9;H0YJ49;H0YJ75;Q13362;H0YN84 E9PFR3 464 471 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform no no 2 0.023052 44.447 By matching By MS/MS 2 1 1.2284 1.1254 5.7281 3 Median 1.1994 1.165 4.8884 2 0 Median 1.2496 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7685000 3529600 4155400 4908700 2464900 2443800 2776300 1064700 1711600 0 0 0 0 0 0 0 0 0 0 0 0 19744 920;1185 20587 103255;103256;103257 104825 104825 1 LFMSLLEDTLSK GLDTGQQQDAQEFSKLFMSLLEDTLSKQKN FSKLFMSLLEDTLSKQKNPDVRNIVQQQFC K L F S K Q 0 0 0 1 0 0 1 0 0 0 4 1 1 1 0 2 1 0 0 0 0 0 12 0 1395.732 Q86UV5 Q86UV5 188 199 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2 0.0041475 44.309 By MS/MS By MS/MS 1 1 1.1706 1.1103 1.2327 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0438 1.12 NaN 1 0 Median 1.3128 1.1006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8293300 4000800 4292500 0 0 0 0 0 0 7507300 3670900 3836500 785920 329920 456000 0 0 0 0 0 0 19745 3281 20588 103258;103259 104826;104827 104827 2 LFNAIIHR GLRCDNFTSSWRDGRLFNAIIHRHKPLLID SSWRDGRLFNAIIHRHKPLLIDMNKVYRQT R L F H R H 1 1 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 982.57123 Q15149;H0YDN1;E9PMV1;E9PKG0 Q15149 329 336 PLEC Plectin yes no 2 0.0022895 110.61 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1.0287 0.89783 33.713 6 Median 1.4822 1.4383 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1346 1.1959 NaN 1 0 Median 1.1818 1.0287 NaN 1 0 Median 0.60438 0.59868 NaN 1 0 Median 0.88283 0.73883 8.3227 2 0 Median 48490000 21123000 27367000 29162000 11263000 17899000 0 0 0 12553000 6218800 6333900 1589900 742330 847600 2689800 1678000 1011800 2495200 1220900 1274300 19746 2933 20589 103260;103261;103262;103263;103264;103265 104828;104829;104830;104831;104832 104828 5 LFNDDNTIPFIIR ERTNIEPWVCANIIRLFNDDNTIPFIIRYR IRLFNDDNTIPFIIRYRKELINNLDADSLR R L F I R Y 0 1 2 2 0 0 0 0 0 3 1 0 0 2 1 0 1 0 0 0 0 0 13 0 1576.8249 Q8N5C6 Q8N5C6 235 247 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 0.0015307 52.278 By MS/MS By matching 2 1 0.83351 0.89423 22.918 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79121 0.8589 5.7014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5024 1.2696 NaN 1 0 Median 4818300 2711400 2106900 0 0 0 0 0 0 4750300 2680000 2070300 0 0 0 0 0 0 67961 31362 36599 19747 3377 20590 103266;103267;103268 104833;104834 104833 2 LFNEAAAIIR VPQILMELPPAEQQRLFNEAAAIIRHLEWT AEQQRLFNEAAAIIRHLEWTDAVQ______ R L F I R H 3 1 1 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 10 0 1116.6291 K7EPS8;Q9NSK7 K7EPS8 88 97 C19orf12 Protein C19orf12 yes no 2 0.00071486 105.57 By MS/MS By matching 1 1 0.87892 0.79779 1.4861 2 Median 0.81193 0.78945 NaN 1 0 Median 0.95144 0.80622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13237000 6804900 6432000 9989400 5135600 4853800 3247500 1669300 1578200 0 0 0 0 0 0 0 0 0 0 0 0 19748 1394 20591 103269;103270 104835;104836 104835 2 LFNEHIEALTK RWESGSLLEREEKEKLFNEHIEALTKKKRE EKEKLFNEHIEALTKKKREHFRQLLDETSA K L F T K K 1 0 1 0 0 0 2 0 1 1 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1313.698 O14776;G3V220 O14776 945 955 TCERG1 Transcription elongation regulator 1 yes no 2;3 5.1738E-05 150.09 By matching By MS/MS By MS/MS By matching 2 2 3 1 1.0722 0.96985 10.09 8 Median NaN NaN NaN 0 0 Median 1.0265 0.90623 16.922 2 0 Median 0.85508 0.90998 6.4239 2 0 Median 1.1122 0.97241 4.6328 3 0 Median 1.0355 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median 89192000 45213000 43979000 0 0 0 1797600 916880 880700 67025000 34907000 32118000 18324000 8459700 9863800 2046300 929980 1116300 0 0 0 19749 1494 20592 103271;103272;103273;103274;103275;103276;103277;103278 104837;104838;104839;104840;104841;104842;104843;104844 104841 8 LFNEHIEALTKK RWESGSLLEREEKEKLFNEHIEALTKKKRE KEKLFNEHIEALTKKKREHFRQLLDETSAI K L F K K K 1 0 1 0 0 0 2 0 1 1 2 2 0 1 0 0 1 0 0 0 0 0 12 1 1441.7929 O14776;G3V220 O14776 945 956 TCERG1 Transcription elongation regulator 1 yes no 3 0.0008586 66.023 By MS/MS 2 0.90317 1.0476 10.332 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90317 1.0476 10.332 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29409000 14651000 14758000 0 0 0 0 0 0 29409000 14651000 14758000 0 0 0 0 0 0 0 0 0 19750 1494 20593 103279;103280 104845;104846 104845 2 LFNEQNFFQR QKQKFSLKLDAKDGRLFNEQNFFQRAAKPL AKDGRLFNEQNFFQRAAKPLQVNKWKKLYS R L F Q R A 0 1 2 0 0 2 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 10 0 1341.6466 M0R073;M0QYA8;Q8IV63 M0R073 161 170 VRK3 Inactive serine/threonine-protein kinase VRK3 yes no 2 2.2233E-06 130.34 By MS/MS 1 2.2676 2.2592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2676 2.2592 NaN 1 1 Median NaN NaN NaN 0 0 Median 15347000 3082200 12265000 0 0 0 0 0 0 0 0 0 0 0 0 15347000 3082200 12265000 0 0 0 19751 1415 20594 103281 104847 104847 1 LFNESHGIFLGLQR IIRKDVDVYSQILRKLFNESHGIFLGLQRI KLFNESHGIFLGLQRIDEELTGKSRKSQLV K L F Q R I 0 1 1 0 0 1 1 2 1 1 3 0 0 2 0 1 0 0 0 0 0 0 14 0 1629.8627 Q9BW27;J3KT10;J3KSH3;J3KRC0 Q9BW27 71 84 NUP85 Nuclear pore complex protein Nup85 yes no 3 0.00013457 68.809 By MS/MS By MS/MS 1 1 1.1463 1.058 4.0261 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0725 1.0886 NaN 1 0 Median 1.2252 1.0283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16255000 7573500 8681700 0 0 0 0 0 0 15538000 7199100 8339000 717090 374330 342750 0 0 0 0 0 0 19752 3861 20595 103282;103283 104848;104849;104850 104849 3 LFNEVQEK QLMGLFNRIIRKVVKLFNEVQEKAIEEQMV IIRKVVKLFNEVQEKAIEEQMVAAKDVVME K L F E K A 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1005.5131 Q9H0A0;A0A087WV29 Q9H0A0 905 912 NAT10 N-acetyltransferase 10 yes no 2 0.0007736 109.86 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 3 1.0098 0.99034 10.655 7 Median 1.0098 1.0207 NaN 1 0 Median 1.3829 1.1711 NaN 1 0 Median 0.81547 0.88941 8.7671 2 1 Median 1.0429 0.90154 NaN 1 1 Median 1.0129 1.0022 1.6822 2 2 Median NaN NaN NaN 0 0 Median 38536000 19497000 19038000 1088100 579910 508190 9816000 4502300 5313600 11218000 5726900 5491100 5064600 2699100 2365500 11349000 5989200 5359800 0 0 0 19753 3921 20596 103284;103285;103286;103287;103288;103289;103290;103291;103292;103293 104851;104852;104853;104854;104855;104856;104857;104858;104859;104860;104861 104860 11 LFNHANQEVQR KKQARSLQAVPRLVKLFNHANQEVQRHATG RLVKLFNHANQEVQRHATGAMRNLIYDNAD K L F Q R H 1 1 2 0 0 2 1 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1354.6742 Q9Y446 Q9Y446 369 379 PKP3 Plakophilin-3 yes yes 3 0.047718 16.137 By matching By MS/MS By matching By MS/MS By matching 1 3 3 1 2 0.91002 0.86142 17.757 10 Median 0.67872 0.6692 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80971 0.85239 14.389 3 0 Median 1.2944 1.1164 18.119 3 0 Plateau 0.81869 0.87055 NaN 1 0 Median 1.12 0.95372 26.924 2 0 Median 10780000 5662900 5117000 1101700 699140 402530 0 0 0 4961200 2697700 2263500 2077600 902110 1175500 1988300 1035600 952680 651120 328360 322770 19754 4437 20597 103294;103295;103296;103297;103298;103299;103300;103301;103302;103303 104862;104863 104863 2 LFNLSKEDDVR VPRRLGPKRASRIRKLFNLSKEDDVRQYVV RIRKLFNLSKEDDVRQYVVRKPLNKEGKKP K L F V R Q 0 1 1 2 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 11 1 1334.683 P62753;A2A3R5 P62753 144 154 RPS6 40S ribosomal protein S6 yes no 3 5.0097E-05 94.616 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.2594 1.2369 15.734 8 Median 1.1375 1.1641 24.848 2 0 Median 1.1954 1.0907 9.0633 2 0 Median 1.2726 1.386 NaN 1 0 Median 1.3862 1.3082 NaN 1 0 Median 1.2488 1.3379 19.029 2 0 Median NaN NaN NaN 0 0 Median 62542000 29129000 33414000 32354000 14855000 17499000 11173000 5130800 6042200 3907600 1725500 2182100 2459400 996820 1462500 12649000 6421000 6228000 0 0 0 19755 2596 20598 103304;103305;103306;103307;103308;103309;103310;103311 104864;104865;104866;104867;104868;104869;104870;104871;104872;104873;104874 104866 11 LFNPLIR YTSYKDAYIGLCLPKLFNPLIRLQLLTWTP YIGLCLPKLFNPLIRLQLLTWTPLEAKCRD K L F I R L 0 1 1 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 871.52797 Q9Y5B6 Q9Y5B6 625 631 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 0.037411 46.351 By MS/MS 1 1.0315 1.0976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0315 1.0976 NaN 1 0 Median NaN NaN NaN 0 0 Median 1879200 938690 940500 0 0 0 0 0 0 0 0 0 0 0 0 1879200 938690 940500 0 0 0 19756 4455 20599 103312 104875 104875 1 LFNSLLLGPTASNNK DSFNSTAKVSPLTPKLFNSLLLGPTASNNK LFNSLLLGPTASNNKTEGSSLRDLLHSGPG K L F N K T 1 0 3 0 0 0 0 1 0 0 4 1 0 1 1 2 1 0 0 0 0 0 15 0 1587.8621 Q7LBC6 Q7LBC6 1273 1287 KDM3B Lysine-specific demethylase 3B yes yes 2 0.00037036 50.284 By MS/MS By matching 1 1 0.57569 0.59322 7.2611 2 Median 0.65248 0.62448 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50794 0.56353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4299100 2390900 1908200 2943200 1451000 1492300 0 0 0 1355900 939940 415910 0 0 0 0 0 0 0 0 0 19757 3230 20600 103313;103314 104876 104876 1 LFNYMYSTAPRPSLEPTR ISDLGGGVPLRKIDRLFNYMYSTAPRPSLE YMYSTAPRPSLEPTRAAPLAGFGYGLPISR R L F T R A 1 2 1 0 0 0 1 0 0 0 2 0 1 1 3 2 2 0 2 0 0 0 18 1 2142.0568 Q15120 Q15120 300 317 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 3 8.7739E-05 41.871 By MS/MS By MS/MS By matching 1 1 1 0.55586 0.56133 48.265 3 Median 0.55586 0.56133 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.37943 0.41082 NaN 1 1 Median 1.1356 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14907000 9974200 4933100 5911000 3866900 2044100 0 0 0 7891300 5609300 2282000 1105000 498060 606940 0 0 0 0 0 0 19758 2929 20601 103315;103316;103317 104877;104878;104879 104877 3 LFPDTPLALDANK KKVAKAYAALAALEKLFPDTPLALDANKKK EKLFPDTPLALDANKKKRAPVPVRGGPKFA K L F N K K 2 0 1 2 0 0 0 0 0 0 3 1 0 1 2 0 1 0 0 0 0 0 13 0 1413.7504 Q12906 Q12906 588 600 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 5.735E-07 106.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 4 3 0.69593 0.68013 13.81 14 Median 0.69652 0.63465 NaN 1 0 Median 0.74028 0.64871 28.016 2 1 Median 0.59861 0.63021 24.305 2 0 Median 0.84956 0.72421 12.017 2 0 Median 0.64023 0.62847 10.151 4 0 Median 0.88177 0.72873 5.001 3 0 Plateau 121090000 69031000 52061000 9884400 5857600 4026800 4253000 2181800 2071200 40613000 22836000 17777000 5169900 2575200 2594800 59012000 34725000 24288000 2159800 856090 1303700 19759 2769 20602 103318;103319;103320;103321;103322;103323;103324;103325;103326;103327;103328;103329;103330;103331 104880;104881;104882;104883;104884;104885;104886;104887;104888;104889;104890;104891;104892;104893;104894;104895;104896;104897;104898;104899;104900;104901 104884 22 LFPDTPLALDANKK KKVAKAYAALAALEKLFPDTPLALDANKKK KLFPDTPLALDANKKKRAPVPVRGGPKFAA K L F K K K 2 0 1 2 0 0 0 0 0 0 3 2 0 1 2 0 1 0 0 0 0 0 14 1 1541.8453 Q12906 Q12906 588 601 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 0.00019372 76.655 By MS/MS By MS/MS By matching By MS/MS By matching 1 3 2 4 1 0.66738 0.67944 12.394 10 Median 0.62246 0.64182 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65409 0.74619 21.287 2 0 Median 0.80537 0.77691 18.588 2 0 Median 0.61611 0.67318 9.08 4 0 Median 0.82635 0.7483 NaN 1 0 Median 77725000 44884000 32840000 4639000 2889000 1750000 0 0 0 33901000 19547000 14355000 819770 426910 392850 37583000 21605000 15978000 781550 416630 364920 19760 2769 20603 103332;103333;103334;103335;103336;103337;103338;103339;103340;103341;103342 104902;104903;104904;104905;104906;104907;104908;104909;104910;104911;104912;104913;104914;104915;104916 104905 14 LFPELFTAENLR QSLSVGNFAARLLVRLFPELFTAENLRLQY LVRLFPELFTAENLRLQYNHSGACNKKQLD R L F L R L 1 1 1 0 0 0 2 0 0 0 3 0 0 2 1 0 1 0 0 0 0 0 12 0 1448.7664 Q5T5X7 Q5T5X7 747 758 BEND3 BEN domain-containing protein 3 yes yes 2 0.0049172 42.336 By MS/MS By matching 1 1 1.2608 1.2854 53.666 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82362 0.87949 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9301 1.8786 NaN 1 0 Median NaN NaN NaN 0 0 Median 2208200 1061600 1146600 0 0 0 0 0 0 2104000 1031500 1072500 0 0 0 104280 30122 74161 0 0 0 19761 3090 20604 103343;103344 104917;104918 104917 2 LFPGSPAIYK VTDGRAKYWLERAAKLFPGSPAIYKLKEQL ERAAKLFPGSPAIYKLKEQLLDCEGEDGWN K L F Y K L 1 0 0 0 0 0 0 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 10 0 1091.6015 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;C9J1W9;C9JF75;C9J6W1;H0YBN8;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 124 133 RANBP2;RGPD1;RGPD2;RGPD5;RGPD6;RGPD8;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.013194 40.352 By MS/MS By matching 1 2 0.91201 0.82625 23.791 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75812 0.82201 NaN 1 0 Median 1.0744 1.014 28.954 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5348400 2917700 2430700 0 0 0 0 0 0 4268400 2371700 1896700 1080000 546000 534010 0 0 0 0 0 0 19762 2401;525;3762 20605 103345;103346;103347 104919;104920 104919 2 LFPLIQAMHPTLAGK ASAPPQEQKQMLGERLFPLIQAMHPTLAGK LFPLIQAMHPTLAGKITGMLLEIDNSELLH R L F G K I 2 0 0 0 0 1 0 1 1 1 3 1 1 1 2 0 1 0 0 0 0 0 15 0 1635.9171 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YB75;H0YAS6 P11940 566 580 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 3 0.025231 18.596 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.78768 0.69963 10.78 7 Median 0.73276 0.71204 9.458 2 0 Median 0.78334 0.65908 6.4853 2 0 Median 0.78768 0.83705 NaN 1 0 Median 0.93808 0.82223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79582 0.69963 NaN 1 0 Median 21662000 12443000 9219200 4254400 2477100 1777200 15266000 8661800 6604300 1965700 1200400 765240 112330 66648 45686 0 0 0 63246 36555 26691 19763 1973 20606 103348;103349;103350;103351;103352;103353;103354 104921;104922;104923;104924 104924 4 LFPLNQQDVPDKFK NKPFYVVAESFKFVRLFPLNQQDVPDKFKY RLFPLNQQDVPDKFKYKADTLKVAQTGQDL R L F F K Y 0 0 1 2 0 2 0 0 0 0 2 2 0 2 2 0 0 0 0 1 0 0 14 1 1687.8934 Q14232 Q14232 238 251 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 3 0.070143 11.44 By MS/MS By matching By matching By matching 1 1 1 1 0.97821 0.89663 9.5127 4 Median 0.90512 0.88392 NaN 1 0 Median 0.95001 0.85566 NaN 1 0 Median 1.0072 1.0607 NaN 1 0 Median 1.0358 0.90953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189800 3034000 3155800 4467700 2205900 2261800 479280 240050 239230 1016400 473260 543090 226510 114790 111730 0 0 0 0 0 0 19764 2866 20607 103355;103356;103357;103358 104925 104925 1 LFPNMLPSTFETQSLKEER VVVPFMEFLLPVAVKLFPNMLPSTFETQSL MLPSTFETQSLKEERLKKELRVKLELAKFL K L F E R L 0 1 1 0 0 1 3 0 0 0 3 1 1 2 2 2 2 0 0 0 0 0 19 1 2266.1304 O95202 O95202 231 249 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 0.021323 17.021 By MS/MS 1 0.96707 0.99075 NaN 1 Median 0.96707 0.99075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2712100 1336400 1375800 2712100 1336400 1375800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19765 1754 20608 103359 104926 104926 1 LFPPDDSPLPVSSR MRTLFGFLGKIDELRLFPPDDSPLPVSSRV RLFPPDDSPLPVSSRVCFVKFHDPDSAVVA R L F S R V 0 1 0 2 0 0 0 0 0 0 2 0 0 1 4 3 0 0 0 1 0 0 14 0 1525.7777 Q5T760;Q05519;B4DWT1 Q5T760 64 77 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 0.00054375 69.979 By MS/MS 4 0.54614 0.56532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54614 0.56532 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6225400 4115500 2110000 0 0 0 0 0 0 6225400 4115500 2110000 0 0 0 0 0 0 0 0 0 19766 2717 20609 103360;103361;103362;103363 104927;104928;104929;104930;104931 104927 5 LFPPWIKPADTEPPPLLVYK AYLDQYLWYEADKRRLFPPWIKPADTEPPP IKPADTEPPPLLVYKWCQGINNLQDVWETS R L F Y K W 1 0 0 1 0 0 1 0 0 1 3 2 0 1 6 0 1 1 1 1 0 0 20 1 2320.2871 Q6P2Q9;I3L0J9 Q6P2Q9 935 954 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.0088131 22.653 By matching By MS/MS By matching 1 1 1 0.34315 0.39676 28.953 3 Median 0.25113 0.27496 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34315 0.39676 NaN 1 0 Median 0.52364 0.4869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10242000 7384200 2857600 1760900 1200500 560440 0 0 0 8187500 5991300 2196200 293400 192470 100920 0 0 0 0 0 0 19767 3157 20610 103364;103365;103366 104932;104933;104934;104935 104935 4 LFPWAQIR NQSIGLIQPFATNGKLFPWAQIRLPTAVVP PFATNGKLFPWAQIRLPTAVVPLRYELSLH K L F I R L 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 8 0 1029.576 Q9UIQ6 Q9UIQ6 160 167 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2 0.033626 38.238 By MS/MS By matching 1 1 0.9788 0.91868 9.8682 2 Median 0.85956 0.85676 NaN 1 0 Median 1.1146 0.98507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2834900 1579400 1255600 2310300 1360700 949520 524680 218620 306060 0 0 0 0 0 0 0 0 0 0 0 0 19768 4292 20611 103367;103368 104936 104936 1 LFPYIQK ALVAAEDVSDNIIAKLFPYIQKGLKSSLPD VSDNIIAKLFPYIQKGLKSSLPDYRAATYM K L F Q K G 0 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 7 0 907.51674 Q9H583;Q5T3Q7 Q9H583 242 248 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.051961 39.218 By MS/MS 1 1.475 1.5527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.475 1.5527 NaN 1 0 Median NaN NaN NaN 0 0 Median 3247700 1189800 2057900 0 0 0 0 0 0 0 0 0 0 0 0 3247700 1189800 2057900 0 0 0 19769 3086 20612 103369 104937 104937 1 LFPYSQYYR DPTELPELLKLYYRRLFPYSQYYRWLNYGG KLYYRRLFPYSQYYRWLNYGGVIKNYFQHR R L F Y R W 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 3 0 0 0 9 0 1235.5975 P49642;F8VSB2;F8VNY2 P49642 20 28 PRIM1 DNA primase small subunit;DNA primase yes no 2 0.04318 32.841 By matching By matching By MS/MS By matching 1 2 2 1 0.81641 0.84992 18.436 6 Median 0.80633 0.80443 NaN 1 0 Median 0.99296 0.85198 32.586 2 0 Median 0.81485 0.84992 3.4063 2 0 Median 1.2646 1.1006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14091000 7877600 6213000 3046600 1779400 1267100 968000 546000 422000 7896500 4516200 3380300 2179500 1036000 1143600 0 0 0 0 0 0 19770 2388 20613 103370;103371;103372;103373;103374;103375 104938 104938 1 LFQCLLHR DLFPTTKIPNPRFQRLFQCLLHRALHPREP PNPRFQRLFQCLLHRALHPREPLPPIQQHI R L F H R A 0 1 0 0 1 1 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 1085.5804 P13010 P13010 490 497 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.033626 38.238 By MS/MS 2 1.6298 1.4762 75.444 2 Median NaN NaN NaN 0 0 Median 1.6298 1.4762 75.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936500 1704300 2232300 0 0 0 3936500 1704300 2232300 0 0 0 0 0 0 0 0 0 0 0 0 19771 1986 20614 103376;103377 104939 104939 1 LFQDFQMLSR VGNNSEGGRGKAGAKLFQDFQMLSRIWTHP KAGAKLFQDFQMLSRIWTHPWCLQLDYISK K L F S R I 0 1 0 1 0 2 0 0 0 0 2 0 1 2 0 1 0 0 0 0 0 0 10 0 1283.6332 P46100;A0A096LNX6 P46100 1872 1881 ATRX Transcriptional regulator ATRX yes no 2 0.00052436 92.062 By matching By MS/MS 1 2 1.0453 1.0943 4.4454 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9007 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0277 1.0835 1.4061 2 0 Median NaN NaN NaN 0 0 Median 7268400 3273400 3995000 0 0 0 0 0 0 405980 188310 217670 0 0 0 6862400 3085100 3777300 0 0 0 19772 2339 20615 103378;103379;103380 104940;104941 104941 2 LFQECCPHSTDR AKIKELRENTQTTIKLFQECCPHSTDRVVL TIKLFQECCPHSTDRVVLIGGKPDRVVECI K L F D R V 0 1 0 1 2 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1548.6449 P61978;Q5T6W2 P61978 180 191 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 7.5708E-05 83.314 By MS/MS By MS/MS 1 2 0.80828 0.8051 18.21 3 Median NaN NaN NaN 0 0 Median 1.2738 1.089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79487 0.795 1.7851 2 0 Median NaN NaN NaN 0 0 Median 23561000 12766000 10795000 0 0 0 3101500 1304800 1796800 0 0 0 0 0 0 20459000 11461000 8998300 0 0 0 19773 2565;3093 20616 103381;103382;103383 104942;104943;104944;104945;104946;104947 104942 6 LFQEDPEAFLLYHR LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG RLFQEDPEAFLLYHRGFQSQVKKWPLQPVD R L F H R G 1 1 0 1 0 1 2 0 1 0 3 0 0 2 1 0 0 0 1 0 0 0 14 0 1776.8835 E9PPY3;O43159 E9PPY3 269 282 RRP8 Ribosomal RNA-processing protein 8 yes no 3 0.00069967 42.209 By MS/MS By MS/MS 1 1 0.8945 0.91426 13.952 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79617 0.82836 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.005 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median 9368900 4524200 4844700 0 0 0 0 0 0 3752100 1953100 1799100 0 0 0 5616700 2571100 3045600 0 0 0 19774 979 20617 103384;103385 104948;104949;104950 104948 3 LFQENSVLSSLPLNSLSR VFEDLSVTLRQLRNRLFQENSVLSSLPLNS ENSVLSSLPLNSLSRNNEVDLLFLSELQVL R L F S R N 0 1 2 0 0 1 1 0 0 0 5 0 0 1 1 5 0 0 0 1 0 0 18 0 2003.0688 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GTU8;A0A1B0GWJ8;H7C3E1;B7Z413;A0A1B0GVC7;A0A1B0GU12;A0A1B0GV60;A0A1B0GW13;H7C240;A0A1B0GVZ1 O75787 158 175 ATP6AP2 Renin receptor yes no 2 0.0032643 30.828 By MS/MS 1 1.1862 1.0034 NaN 1 Median NaN NaN NaN 0 0 Median 1.1862 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1508500 685820 822640 0 0 0 1508500 685820 822640 0 0 0 0 0 0 0 0 0 0 0 0 19775 316 20618 103386 104951;104952 104952 2 LFQFLQAEPHNSLGK TRDHMGSVMAQVRQKLFQFLQAEPHNSLGK LFQFLQAEPHNSLGKAARRLSLMLHGLVTP K L F G K A 1 0 1 0 0 2 1 1 1 0 3 1 0 2 1 1 0 0 0 0 0 0 15 0 1727.8995 Q6P2E9;I3L3M2;I3L0V0 Q6P2E9 1369 1383 EDC4 Enhancer of mRNA-decapping protein 4 yes no 3 0.0029523 29.733 By matching By matching By MS/MS 1 1 1 0.96679 0.92854 21.3 3 Median 0.96679 0.92854 NaN 1 0 Median 1.1089 0.9598 NaN 1 0 Median 0.60327 0.65351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10803000 5869400 4933200 5023200 2527800 2495500 602550 264520 338030 5176900 3077100 2099700 0 0 0 0 0 0 0 0 0 19776 3155 20619 103387;103388;103389 104953 104953 1 LFQGQLVLR INKGEEQIGFELVEKLFQGQLVLRTRCLEC FELVEKLFQGQLVLRTRCLECESLTERRED K L F L R T 0 1 0 0 0 2 0 1 0 0 3 0 0 1 0 0 0 0 0 1 0 0 9 0 1072.6393 O94782 O94782 429 437 USP1 Ubiquitin carboxyl-terminal hydrolase 1 yes yes 2 0.0054606 57.559 By MS/MS By matching 1 2 1.1415 1.0076 14.372 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73716 0.78943 NaN 1 0 Median 1.1735 1.0124 0.67699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2798500 1545300 1253200 0 0 0 0 0 0 2493200 1385900 1107300 305300 159420 145880 0 0 0 0 0 0 19777 1724 20620 103390;103391;103392 104954;104955 104955 2 LFQITPDKIQFER SGSQLLVGCEDGSVKLFQITPDKIQFERNF VKLFQITPDKIQFERNFDRQKSRILSLSWH K L F E R N 0 1 0 1 0 2 1 0 0 2 1 1 0 2 1 0 1 0 0 0 0 0 13 1 1633.8828 H3BSH7;Q969X6;J3KSI1;J3KSE6;J3KTR0;H3BPD7;I3L4T9 H3BSH7 141 153 CIRH1A Cirhin yes no 3 0.060411 14.03 By MS/MS 1 1.0887 1.1275 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0887 1.1275 NaN 1 0 Median NaN NaN NaN 0 0 Median 891830 499720 392110 0 0 0 0 0 0 0 0 0 0 0 0 891830 499720 392110 0 0 0 19778 1234 20621 103393 104956 104956 1 LFQLPTPPLSR VGFGHMSTTGCVLNKLFQLPTPPLSRHQLK VLNKLFQLPTPPLSRHQLKRLEEHRYQSAG K L F S R H 0 1 0 0 0 1 0 0 0 0 3 0 0 1 3 1 1 0 0 0 0 0 11 0 1267.7289 A0A0C4DGS9;Q9Y6K0 A0A0C4DGS9 35 45 CEPT1 Choline/ethanolaminephosphotransferase 1 yes no 2 0.0011852 60.436 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.87803 0.90875 9.8259 6 Median 0.90754 0.8936 NaN 1 0 Median 0.97732 0.849 19.036 2 0 Median 0.80483 0.89628 7.9401 2 0 Median 1.0661 0.92415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15278000 8106200 7171500 8716200 4705200 4011000 3774900 1882100 1892900 2707800 1482200 1225600 78801 36732 42069 0 0 0 0 0 0 19779 254 20622 103394;103395;103396;103397;103398;103399 104957;104958;104959;104960;104961 104957 5 LFQLTEK LSAKFCNRVLKFFTKLFQLTEKSPNPSLLH RVLKFFTKLFQLTEKSPNPSLLHLCGSLAQ K L F E K S 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 877.49092 Q5T4S7;A0A0A0MSW0 Q5T4S7 1434 1440 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.015417 85.265 By MS/MS 1 1.3119 1.1487 NaN 1 Median NaN NaN NaN 0 0 Median 1.3119 1.1487 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6446100 2598600 3847500 0 0 0 6446100 2598600 3847500 0 0 0 0 0 0 0 0 0 0 0 0 19780 3089 20623 103400 104962 104962 1 LFQLYPR DNLEKYGFEPTQEGKLFQLYPRNFLR____ FEPTQEGKLFQLYPRNFLR___________ K L F P R N 0 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 7 0 935.52289 Q8IXM3 Q8IXM3 127 133 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 0.0029035 119.7 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.2262 1.1178 13.787 5 Median 0.99794 0.96627 NaN 1 0 Median 1.3162 1.1178 NaN 1 0 Median 0.94961 0.96304 NaN 1 0 Median 1.5539 1.2335 NaN 1 0 Median 1.2262 1.3021 NaN 1 0 Median NaN NaN NaN 0 0 Median 56386000 26827000 29559000 39121000 19203000 19918000 7778800 3255900 4522900 7061200 3326900 3734400 489150 178890 310270 1935800 862900 1072900 0 0 0 19781 3334 20624 103401;103402;103403;103404;103405 104963;104964;104965;104966;104967;104968;104969 104965 7 LFQNWLDQDAVTAR KRLERWGRGAFGHLRLFQNWLDQDAVTARE RLFQNWLDQDAVTAREAIRRLRATCHVVSD R L F A R E 2 1 1 2 0 2 0 0 0 0 2 0 0 1 0 0 1 1 0 1 0 0 14 0 1675.8318 A0A0B4J2G4;Q15345;A0A0C4DH00 A0A0B4J2G4 747 760 LRRC41 Leucine-rich repeat-containing protein 41 yes no 2 0.0001247 81.475 By MS/MS By MS/MS 1 2 0.88524 0.94032 5.0113 3 Plateau 0.89269 0.88386 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85654 0.89669 6.9886 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9604100 4647300 4956800 1806900 850450 956440 0 0 0 7797200 3796800 4000400 0 0 0 0 0 0 0 0 0 19782 226 20625 103406;103407;103408 104970;104971;104972;104973 104972 4 LFQPVQYGQKPEGR APAARPAAAKLKASRLFQPVQYGQKPEGRT RLFQPVQYGQKPEGRTVAFPSTHPPRTAAP R L F G R T 0 1 0 0 0 3 1 2 0 0 1 1 0 1 2 0 0 0 1 1 0 0 14 1 1645.8576 Q96L91 Q96L91 1463 1476 EP400 E1A-binding protein p400 yes yes 2;3 1.6107E-07 117.93 By MS/MS By matching 2 1 0.56037 0.65121 26.411 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4899 0.56881 19.131 2 0 Median 0.95086 0.84256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50123000 31647000 18475000 0 0 0 0 0 0 48950000 30999000 17952000 1172300 648700 523580 0 0 0 0 0 0 19783 3700 20626 103409;103410;103411 104974;104975;104976;104977 104974 4 LFQQIYSDGSDEVKR EEKNEKLEGDAALNRLFQQIYSDGSDEVKR LFQQIYSDGSDEVKRAMNKSFMESGGTVLS R L F K R A 0 1 0 2 0 2 1 1 0 1 1 1 0 1 0 2 0 0 1 1 0 0 15 1 1783.8741 Q9Y2Z0 Q9Y2Z0 312 326 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2;3 4.7683E-07 93.478 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.2255 1.3134 30.009 5 Median 1.3927 1.4923 18.062 2 1 Median 1.1846 1.1089 NaN 1 0 Median 1.6669 1.897 NaN 1 0 Median 1.0386 0.91236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43202000 18298000 24904000 30074000 12930000 17144000 2247800 1014100 1233700 9833500 3861600 5971900 1047000 492330 554650 0 0 0 0 0 0 19784 4398 20627 103412;103413;103414;103415;103416 104978;104979;104980;104981;104982 104978 5 LFQSDTNAMLGK IDPNERPVTLYHLLKLFQSDTNAMLGKKTV LLKLFQSDTNAMLGKKTVVSEFYDEMIFQD K L F G K K 1 0 1 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 0 0 0 12 0 1323.6493 O95619;F8W1B9;F8W0J4;F8VTR4 O95619 120 131 YEATS4 YEATS domain-containing protein 4 yes no 2 5.0111E-06 101.11 By MS/MS By matching 1 1 1.0372 0.9215 5.6202 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94444 0.88559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1391 0.95885 NaN 1 0 Median 27124000 13449000 13675000 0 0 0 0 0 0 25315000 12664000 12651000 0 0 0 0 0 0 1808900 785130 1023800 19785 1783 20628 103417;103418 104983;104984 104983 2 LFQSNDPTLR LGTTEATEAFFAMTKLFQSNDPTLRRMCYL FAMTKLFQSNDPTLRRMCYLTIKEMSCIAE K L F L R R 0 1 1 1 0 1 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 10 0 1189.6091 Q9Y678 Q9Y678 76 85 COPG1 Coatomer subunit gamma-1 yes yes 2 0.0023475 60.59 By MS/MS 1 0.87609 0.85629 NaN 1 Median 0.87609 0.85629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2778400 1619000 1159400 2778400 1619000 1159400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19786 4481 20629 103419 104985 104985 1 LFQSNDQTLR FGTTEATEAFFAMTRLFQSNDQTLRRMCYL FAMTRLFQSNDQTLRRMCYLTIKEMATISE R L F L R R 0 1 1 1 0 2 0 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 10 0 1220.6149 Q9UBF2 Q9UBF2 76 85 COPG2 Coatomer subunit gamma-2 yes yes 2 0.00035174 83.948 By MS/MS By MS/MS 1 1 1.1188 1.0192 7.0275 2 Median 1.0126 0.9698 NaN 1 0 Median 1.2361 1.0711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8357600 3707800 4649800 4982600 2114100 2868500 3375100 1593800 1781300 0 0 0 0 0 0 0 0 0 0 0 0 19787 4238 20630 103420;103421 104986;104987;104988 104988 3 LFQTAFPAPYGPSPASR FIIAGRQAGRRCRGRLFQTAFPAPYGPSPA QTAFPAPYGPSPASRYVQKLPMIGRTSRPA R L F S R Y 3 1 0 0 0 1 0 1 0 0 1 0 0 2 4 2 1 0 1 0 0 0 17 0 1805.9101 Q9Y6J9 Q9Y6J9 577 593 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 2 0.00016645 58.674 By MS/MS 1 0.49385 0.52123 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49385 0.52123 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3686700 2299700 1387000 0 0 0 0 0 0 3686700 2299700 1387000 0 0 0 0 0 0 0 0 0 19788 4494 20631 103422 104989 104989 1 LFQTAITR PGNDDSPLAVHLYCRLFQTAITRAKEKRQQ AVHLYCRLFQTAITRAKEKRQQVEALYRLQ R L F T R A 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 8 0 948.53927 Q9Y399 Q9Y399 252 259 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 0.004701 86.794 By MS/MS By MS/MS 1 1 1.2343 1.0318 42.135 2 Median NaN NaN NaN 0 0 Median 1.6437 1.3899 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92685 0.76594 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7482100 3137100 4345000 0 0 0 6308800 2587000 3721700 0 0 0 1173400 550090 623290 0 0 0 0 0 0 19789 4409 20632 103423;103424 104990;104991 104990 2 LFQVEYAIEAIK SEYDRGVNTFSPEGRLFQVEYAIEAIKLGS EGRLFQVEYAIEAIKLGSTAIGIQTSEGVC R L F I K L 2 0 0 0 0 1 2 0 0 2 1 1 0 1 0 0 0 0 1 1 0 0 12 0 1422.7759 P28066 P28066 21 32 PSMA5 Proteasome subunit alpha type-5 yes yes 2 0.00016877 86.624 By MS/MS By MS/MS 1 1 1.1914 1.0533 1.4324 2 Median 1.1204 1.0427 NaN 1 0 Median 1.267 1.064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13076000 5727300 7348600 7182000 3290900 3891100 5893900 2436400 3457500 0 0 0 0 0 0 0 0 0 0 0 0 19790 2159 20633 103425;103426 104992;104993;104994;104995 104993 4 LFQVLAPR EMRGYAEKEKDLIPKLFQVLAPRYKDQTGG EKDLIPKLFQVLAPRYKDQTGGYTRMLQIP K L F P R Y 1 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 8 0 942.56509 E9PKV2;Q9NRX2 E9PKV2 66 73 MRPL17 39S ribosomal protein L17, mitochondrial yes no 2 0.0032372 100.07 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.0188 1.0326 17.159 5 Median 0.91657 0.89066 NaN 1 0 Median 1.4593 1.2121 NaN 1 0 Median 0.97228 0.95904 10.449 2 0 Median 1.5682 1.2911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20291000 10041000 10249000 10678000 5481400 5197000 1726800 673140 1053700 7339200 3669400 3669700 546130 217410 328720 0 0 0 0 0 0 19791 952 20634 103427;103428;103429;103430;103431 104996;104997;104998;104999;105000 104996 5 LFRPWLNMDR FEGMKAFKGKDQQVRLFRPWLNMDRMLRSA DQQVRLFRPWLNMDRMLRSAMRLCLPSFDK R L F D R M 0 2 1 1 0 0 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 10 1 1346.6918 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4;M0R2K7 O15382 117 126 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 3 0.0010442 57.348 By MS/MS By matching 1 1 0.98122 0.97265 26.044 2 Median 0.76893 0.80905 NaN 1 0 Median 1.2521 1.1693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9641300 4756400 4884900 9484100 4679000 4805100 157200 77384 79819 0 0 0 0 0 0 0 0 0 0 0 0 19792 1543 20635 103432;103433 105001;105002 105001 2 LFSADPFDLEAQAK EQQQDRARREQERIRLFSADPFDLEAQAKI RLFSADPFDLEAQAKIEEDIRQQNIEENMT R L F A K I 3 0 0 2 0 1 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 14 0 1550.7617 Q5TDH0;H0YII4;H0YI90 Q5TDH0 192 205 DDI2 Protein DDI1 homolog 2 yes no 2 0.023217 26.786 By matching By MS/MS 1 1 1.1013 1.0115 5.1222 2 Median 1.005 0.9755 NaN 1 0 Median 1.2068 1.0488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184700 1461000 1723800 1832900 868830 964110 1351800 592150 759650 0 0 0 0 0 0 0 0 0 0 0 0 19793 3103 20636 103434;103435 105003;105004 105004 2 LFSAGNEETK EYQHMLANSISDFFRLFSAGNEETKLQVLK SDFFRLFSAGNEETKLQVLKLLLNLAENPA R L F T K L 1 0 1 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1094.5244 Q9UH62 Q9UH62 251 260 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.035967 32.32 By matching By MS/MS By matching By matching 1 1 1 1 1.3982 1.1605 18.79 4 Median 1.3096 1.1632 NaN 1 0 Median 1.4927 1.2755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5509 1.1579 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0148 0.83134 NaN 1 0 Median 2330100 981680 1348400 357050 147660 209390 1296400 555710 740710 0 0 0 332990 112070 220920 0 0 0 343630 166250 177380 19794 4269 20637 103436;103437;103438;103439 105005;105006 105006 2 LFSANDVENIFSR LIIKVFREPFVSNSKLFSANDVENIFSRIV SKLFSANDVENIFSRIVDIHELSVKLLGHI K L F S R I 1 1 2 1 0 0 1 0 0 1 1 0 0 2 0 2 0 0 0 1 0 0 13 0 1510.7416 G5E9C8;Q07889 G5E9C8 236 248 SOS1 Son of sevenless homolog 1 yes no 2 0.0090845 54.608 By MS/MS 1 0.86762 0.8706 NaN 1 Median 0.86762 0.8706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1963700 902460 1061200 1963700 902460 1061200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19795 1129 20638 103440 105007 105007 1 LFSDEAANIYER SSKLLAEKGDMNNAKLFSDEAANIYERAIS NAKLFSDEAANIYERAISTLLKKNMLLYFA K L F E R A 2 1 1 1 0 0 2 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 12 0 1426.6729 Q12996;E9PLP8 Q12996 319 330 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 4.7077E-06 157.24 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 4 1 1 1 1.0538 1.1166 51.866 10 Median 0.93177 0.8865 54.722 2 1 Median 1.9949 1.7731 NaN 1 0 Median 1.0538 1.1469 15.047 4 0 Median 1.2855 1.1079 NaN 1 0 Median 0.30057 0.31183 NaN 1 1 Median 0.60497 0.52567 NaN 1 0 Median 81832000 41808000 40024000 7588600 3829300 3759300 416280 68835 347450 57231000 29322000 27909000 10052000 4158100 5894000 6068900 4138700 1930300 475870 291260 184610 19796 2777 20639 103441;103442;103443;103444;103445;103446;103447;103448;103449;103450 105008;105009;105010;105011;105012;105013;105014;105015;105016 105010 9 LFSDEDDR SSAVEMPFRNSKRSRLFSDEDDRQINTRSP RNSKRSRLFSDEDDRQINTRSPKRNQRVAM R L F D R Q 0 1 0 3 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 995.4196 Q5TKA1;H0Y322;B1B047 Q5TKA1 63 70 LIN9 Protein lin-9 homolog yes no 2 0.049701 34.808 By matching By MS/MS 1 2 0.95679 0.85115 6.8239 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91936 0.94929 NaN 1 0 Median 0.98449 0.84419 1.1601 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1571700 799340 772350 0 0 0 0 0 0 602310 353740 248570 969380 445590 523780 0 0 0 0 0 0 19797 3106 20640 103451;103452;103453 105017 105017 1 LFSELPLAK EVTRPTNSKSMKVVKLFSELPLAKKKETYD SMKVVKLFSELPLAKKKETYDWYPNHHTYA K L F A K K 1 0 0 0 0 0 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 9 0 1016.5906 Q9Y291;C9JBY7 Q9Y291 36 44 MRPS33 28S ribosomal protein S33, mitochondrial yes no 2 0.0040235 61.962 By MS/MS By matching By matching By matching By matching 1 3 2 1 1 1.0667 0.92466 31.085 8 Median 0.69935 0.63447 NaN 1 0 Median 0.99224 0.87949 40.936 3 0 Median 1.1485 1.2052 1.4823 2 0 Median 1.1481 0.95169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0365 0.89839 NaN 1 0 Median 36887000 19104000 17784000 18282000 10347000 7934500 14339000 6781700 7557300 3678100 1780300 1897800 378580 122140 256440 0 0 0 209930 72254 137680 19798 4380 20641 103454;103455;103456;103457;103458;103459;103460;103461 105018;105019 105018 2 LFSEYHEK EVDADQVILSHSPMKLFSEYHEKRMLVSGQ LSHSPMKLFSEYHEKRMLVSGQGPVMENAQ K L F E K R 0 0 0 0 0 0 2 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 8 0 1051.4975 Q9BXW7 Q9BXW7 125 132 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 0.042262 36.395 By MS/MS 1 1.8367 1.5788 NaN 1 Median NaN NaN NaN 0 0 Median 1.8367 1.5788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666400 719030 947400 0 0 0 1666400 719030 947400 0 0 0 0 0 0 0 0 0 0 0 0 19799 3882 20642 103462 105020 105020 1 LFSGATMASSR LDGLYRVAREEGLRRLFSGATMASSRGALV GLRRLFSGATMASSRGALVTVGQLSCYDQA R L F S R G 2 1 0 0 0 0 0 1 0 0 1 0 1 1 0 3 1 0 0 0 0 0 11 0 1126.5441 B4DLN1 B4DLN1 315 325 no no 2 1.3055E-06 119.68 By MS/MS By MS/MS By MS/MS 4 2 3 0.995 0.90195 67.216 7 Median 1.0919 1.0223 80.347 3 0 Median 1.2652 1.0958 27.526 2 0 Median 0.35912 0.36117 31.997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38887000 22485000 16401000 25114000 15164000 9950300 9175600 3828300 5347300 4596900 3493200 1103800 0 0 0 0 0 0 0 0 0 19800 598 20643 103463;103464;103465;103466;103467;103468;103469;103470;103471 105021;105022;105023;105024 105022 4 LFSGDVVLTAR GNKGIGLAIVRDLCRLFSGDVVLTARDVTR DLCRLFSGDVVLTARDVTRGQAAVQQLQAE R L F A R D 1 1 0 1 0 0 0 1 0 0 2 0 0 1 0 1 1 0 0 2 0 0 11 0 1176.6503 P16152;E9PQ63;A8MTM1 P16152 28 38 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.00016746 91.584 By MS/MS By MS/MS By MS/MS 1 2 1 0.87766 1.2285 43.133 4 Linear 1.0606 0.98985 NaN 1 0 Median 0.91126 0.76423 33.272 2 1 Median 0.40445 0.4003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101840000 51342000 50502000 75370000 36617000 38753000 21883000 11517000 10366000 4591100 3207100 1384000 0 0 0 0 0 0 0 0 0 19801 2025 20644 103472;103473;103474;103475 105025;105026;105027;105028;105029 105026 5 LFSGLSVSSEGPSQR IVFDAGFFRVESPVKLFSGLSVSSEGPSQR LFSGLSVSSEGPSQRLGTPKSVNKAVSQSR K L F Q R L 0 1 0 0 0 1 1 2 0 0 2 0 0 1 1 5 0 0 0 1 0 0 15 0 1549.7736 Q15398 Q15398 622 636 DLGAP5 Disks large-associated protein 5 yes yes 2 1.5986E-13 119.76 By MS/MS By MS/MS By matching 1 2 1 0.98589 0.83068 20.802 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0625 1.1271 NaN 1 1 Median 0.94621 0.80944 17.725 2 0 Median NaN NaN NaN 0 0 Median 0.91481 0.75206 NaN 1 0 Median 17505000 8820400 8685000 0 0 0 0 0 0 13515000 6726900 6787900 3429800 1747100 1682700 0 0 0 560830 346410 214420 19802 2948 20645 103476;103477;103478;103479 105030;105031;105032;105033;105034 105030 5 LFSGTQISTIAESEDSQESVDSVTDSQK PQVQTVQSSCKDLKRLFSGTQISTIAESED EDSQESVDSVTDSQKRREILSRRPSYRKIL R L F Q K R 1 0 0 3 0 3 3 1 0 2 1 1 0 1 0 7 3 0 0 2 0 0 28 0 2987.3731 P16220;C9J4L5;H7C3I0;E7EWP8;C9J276 P16220 96 123 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 3 0.005058 22.888 By MS/MS 1 0.88479 0.95192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88479 0.95192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3488100 1736500 1751600 0 0 0 0 0 0 3488100 1736500 1751600 0 0 0 0 0 0 0 0 0 19803 2027 20646 103480 105035 105035 1 LFSIVRPR NEDEMMVAIFEYIDRLFSIVRPRRLLYMAI IFEYIDRLFSIVRPRRLLYMAIDGVAPRAK R L F P R R 0 2 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 Q9H0D6 Q9H0D6 88 95 XRN2 5-3 exoribonuclease 2 yes yes 2 0.016408 94.407 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.99516 0.97425 17.462 5 Median 1.1856 1.3172 NaN 1 0 Median 0.91576 0.90603 NaN 1 0 Median 1.0785 1.2462 NaN 1 0 Median 0.99516 0.97425 NaN 1 0 Median 0.85682 0.93095 NaN 1 0 Median NaN NaN NaN 0 0 Median 28180000 12862000 15318000 4231200 1969900 2261300 1835600 909040 926590 8492400 2527000 5965400 1571800 790370 781420 12049000 6665300 5383200 0 0 0 19804 3924 20647 103481;103482;103483;103484;103485 105036;105037 105036 2 LFSLELVDESGEIR KSQIRTWSNSRGEGKLFSLELVDESGEIRA KLFSLELVDESGEIRATAFNEQVDKFFPLI K L F I R A 0 1 0 1 0 0 3 1 0 1 3 0 0 1 0 2 0 0 0 1 0 0 14 0 1605.825 P27694 P27694 221 234 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 7.1747E-08 116.55 By MS/MS 1 5.6404 5.3161 NaN 1 Median 5.6404 5.3161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30156000 4882800 25273000 30156000 4882800 25273000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19805 2156 20648 103486 105038 105038 1 LFSLPAQPLWNNR TKKLMMWKETGGVEKLFSLPAQPLWNNRLL EKLFSLPAQPLWNNRLLKLFTRCLTPLVPE K L F N R L 1 1 2 0 0 1 0 0 0 0 3 0 0 1 2 1 0 1 0 0 0 0 13 0 1554.8307 O60216 O60216 372 384 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 4.145E-07 143.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1 0.6713 0.67926 14.255 9 Median NaN NaN NaN 0 0 Median 1.0765 0.94188 NaN 1 0 Median 0.62303 0.6588 4.004 2 0 Median 0.96603 0.83972 5.203 2 0 Median 0.66433 0.67931 3.5505 3 1 Plateau 0.79065 0.67926 NaN 1 0 Median 45718000 27627000 18091000 0 0 0 1686800 907600 779250 19077000 11753000 7323700 803910 407460 396450 17332000 10379000 6953700 6818200 4180300 2638000 19806 1603 20649 103487;103488;103489;103490;103491;103492;103493;103494;103495 105039;105040;105041;105042;105043;105044;105045;105046;105047 105045 9 LFSNFSGADLLK TQQWLLKNRFSSYTRLFSNFSGADLLKLTK YTRLFSNFSGADLLKLTKEDLVQICGAADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 2 0 0 0 0 0 0 12 0 1310.6871 Q9NZI7;F8WEP8 Q9NZI7 388 399 UBP1 Upstream-binding protein 1 yes no 2 0.0031291 71.451 By MS/MS By MS/MS 1 1 5.359 4.8613 42.534 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.7523 3.5986 NaN 1 1 Median 7.6537 6.567 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131970000 14011000 117960000 0 0 0 0 0 0 127900000 13548000 114350000 4072600 463180 3609400 0 0 0 0 0 0 19807 4187 20650 103496;103497 105048;105049 105048 2 LFSQDHLVIYK KTSAEKREIEEKLHKLFSQDHLVIYKGYVD KLHKLFSQDHLVIYKGYVDDPRNTDNAWME K L F Y K G 0 0 0 1 0 1 0 0 1 1 2 1 0 1 0 1 0 0 1 1 0 0 11 0 1361.7343 Q9BW91;H7C386 Q9BW91 256 266 NUDT9 ADP-ribose pyrophosphatase, mitochondrial yes no 3 0.0026229 38.783 By MS/MS By matching 1 1 1.3816 1.2556 1.6741 2 Median 1.3312 1.2408 NaN 1 0 Median 1.4339 1.2705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8935900 3858300 5077700 8556300 3665400 4890900 379660 192850 186800 0 0 0 0 0 0 0 0 0 0 0 0 19808 3866 20651 103498;103499 105050;105051 105050 2 LFSQETVMK DFLSERPWIKRMIFKLFSQETVMKFVPRYS KRMIFKLFSQETVMKFVPRYSLVLELSDSG K L F M K F 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 1 0 0 9 0 1081.5478 Q9HDC9 Q9HDC9 348 356 APMAP Adipocyte plasma membrane-associated protein yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By matching 1 2 1 1.4694 1.3014 1.4992 4 Median 1.3974 1.2892 NaN 1 0 Median 1.554 1.321 1.2021 2 0 Median 1.1337 1.293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47284000 20572000 26712000 23968000 11241000 12727000 19175000 7565400 11610000 4141300 1766100 2375200 0 0 0 0 0 0 0 0 0 19809 4039 20652 103500;103501;103502;103503 105052;105053;105054;105055;105056 105052 5 LFSSEQQASILHVLNTASTK FCDENAKEPENALDKLFSSEQQASILHVLN QQASILHVLNTASTKELEAFRLLRGRRSIN K L F T K E 2 0 1 0 0 2 1 0 1 1 3 1 0 1 0 4 2 0 0 1 0 0 20 0 2173.1379 Q96QE5;J3KTG7 Q96QE5 64 83 TEFM Transcription elongation factor, mitochondrial yes no 3 1.3689E-05 39.523 By MS/MS 1 1.3548 1.303 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3548 1.303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1994700 774680 1220000 0 0 0 0 0 0 1994700 774680 1220000 0 0 0 0 0 0 0 0 0 19810 3721 20653 103504 105057 105057 1 LFSSQYGK KKDPNFKGFSGAGEKLFSSQYGKMANKANT FSGAGEKLFSSQYGKMANKANTSGDFEKDD K L F G K M 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 2 0 0 1 0 0 0 8 0 928.46543 P49792;J3KNE0;A6NKT7 P49792 1978 1985 RANBP2;RGPD3 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3 no no 2 0.0098941 77.674 By MS/MS By MS/MS By matching 1 1 1 1.0435 1.1175 38.32 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0435 1.1175 NaN 1 1 Median 0.96288 0.90978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63755 0.53202 NaN 1 0 Median 9960300 5403100 4557200 0 0 0 0 0 0 8274100 4382900 3891200 1059900 660070 399780 0 0 0 626340 360120 266220 19811 2401;525 20654 103505;103506;103507 105058;105059;105060 105058 3 LFSWLVNR AYYARDALAKNLYSRLFSWLVNRINESIKA AKNLYSRLFSWLVNRINESIKAQTKVRKKV R L F N R I 0 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 8 0 1033.5709 E9PDF6;O43795;A0A0U1RRI3 E9PDF6 360 367 MYO1B Unconventional myosin-Ib yes no 2 0.039331 37.021 By matching By MS/MS 1 1 1.5457 1.6705 2.6644 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4981 1.6394 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5948 1.7023 NaN 1 0 Median NaN NaN NaN 0 0 Median 3700300 1534800 2165500 0 0 0 0 0 0 2273300 1010100 1263200 0 0 0 1427000 524740 902300 0 0 0 19812 914 20655 103508;103509 105061 105061 1 LFSYYGPQEGDKK EALVPGASEDTLLERLFSYYGPQEGDKKGQ ERLFSYYGPQEGDKKGQSPLLHSSKPHHFL R L F K K G 0 0 0 1 0 1 1 2 0 0 1 2 0 1 1 1 0 0 2 0 0 0 13 1 1530.7355 Q92614;A0A0D9SFK2 Q92614 901 913 MYO18A Unconventional myosin-XVIIIa yes no 3 0.027607 19.578 By matching By MS/MS 1 1 1.5379 1.3879 31.732 2 Median NaN NaN NaN 0 0 Median 1.9948 1.737 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1856 1.109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32404000 9978700 22425000 0 0 0 31085000 9465700 21619000 0 0 0 1319400 512950 806460 0 0 0 0 0 0 19813 267 20656 103510;103511 105062 105062 1 LFTAESLIGLKNPEK KKGVQLQTHPNVDKKLFTAESLIGLKNPEK LFTAESLIGLKNPEKSFPVNSDVGVLKWRL K L F E K S 1 0 1 0 0 0 2 1 0 1 3 2 0 1 1 1 1 0 0 0 0 0 15 1 1658.9243 B0YIW6;P48444 B0YIW6 378 392 ARCN1 Coatomer subunit delta yes no 3 0.0033509 30.133 By MS/MS By matching 1 1 0.90601 0.83038 3.405 2 Median 0.86007 0.81063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9544 0.85062 NaN 1 0 Median 6634900 3428900 3205900 6515900 3366400 3149600 0 0 0 0 0 0 0 0 0 0 0 0 118930 62582 56349 19814 561 20657 103512;103513 105063;105064 105063 2 LFTAHNNMTNYATVWASK NDVVYVIDSCKQKVKLFTAHNNMTNYATVW AHNNMTNYATVWASKTNLEQRKGRAGRVRP K L F S K T 3 0 3 0 0 0 0 0 1 0 1 1 1 1 0 1 3 1 1 1 0 0 18 0 2067.9836 Q08211 Q08211 738 755 DHX9 ATP-dependent RNA helicase A yes yes 2;3 2.6071E-15 143.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 12 6 7 3 1.198 1.2136 14.838 34 Median 1.3122 1.3185 9.8084 3 0 Median 1.2825 1.0952 10.925 3 0 Median 1.1261 1.2138 15.6 12 5 Median 1.4405 1.2377 23.454 6 0 Median 1.1625 1.1995 8.1529 7 0 Median 1.6364 1.3662 15.039 3 0 Plateau 398320000 181140000 217170000 14404000 6733300 7671100 7354100 3228400 4125700 274050000 124930000 149120000 7408200 2837800 4570400 93714000 42803000 50911000 1380900 608110 772770 19815 2736 20658;20659 103514;103515;103516;103517;103518;103519;103520;103521;103522;103523;103524;103525;103526;103527;103528;103529;103530;103531;103532;103533;103534;103535;103536;103537;103538;103539;103540;103541;103542;103543;103544;103545;103546;103547 105065;105066;105067;105068;105069;105070;105071;105072;105073;105074;105075;105076;105077;105078;105079;105080;105081;105082;105083;105084;105085;105086;105087;105088;105089;105090;105091 105072 1422 27 LFTEEELAR AGQTPRPAERGPPVRLFTEEELARYGGEEE RGPPVRLFTEEELARYGGEEEDQPIYLAVK R L F A R Y 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1106.5608 Q9UMX5 Q9UMX5 46 54 NENF Neudesin yes yes 2 0.0011692 84.498 By MS/MS By matching By matching By matching 1 1 1 1 0.71869 0.67696 51.903 4 Median 1.5266 1.4852 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41474 0.44084 NaN 1 0 Median 0.92906 0.77803 NaN 1 0 Median 0.55595 0.58901 NaN 1 0 Median NaN NaN NaN 0 0 Median 14860000 6873700 7986200 9982500 3952500 6030000 0 0 0 2004800 1358000 646790 1003600 462830 540800 1868900 1100400 768520 0 0 0 19816 4337 20660 103548;103549;103550;103551 105092;105093 105092 2 LFTEVEGTCTGK PRYFGPNLLNTVKQKLFTEVEGTCTGKYGF KQKLFTEVEGTCTGKYGFVIAVTTIDNIGA K L F G K Y 0 0 0 0 1 0 2 2 0 0 1 1 0 1 0 0 3 0 0 1 0 0 12 0 1340.6282 P62487;E9PIU7;E9PKH3;H0YEE4 P62487 30 41 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes no 2 0.00014004 88.681 By MS/MS 1 1.0884 0.94307 NaN 1 Median NaN NaN NaN 0 0 Median 1.0884 0.94307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1587300 687430 899870 0 0 0 1587300 687430 899870 0 0 0 0 0 0 0 0 0 0 0 0 19817 2590 20661 103552 105094 105094 1 LFTFHADICTLPDTEK LTPDETYVPKAFDEKLFTFHADICTLPDTE FTFHADICTLPDTEKQIKKQTALVELLKHK K L F E K Q 1 0 0 2 1 0 1 0 1 1 2 1 0 2 1 0 3 0 0 0 0 0 16 0 1906.9135 CON__P02769 CON__P02769 529 544 yes yes 3 3.6303E-05 62.357 By MS/MS By MS/MS 1 1 0.033728 0.029965 101.15 2 Median 0.064776 0.061267 NaN 1 1 Median 0.017562 0.014655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31526000 30959000 567410 8754300 8376300 377970 22772000 22582000 189440 0 0 0 0 0 0 0 0 0 0 0 0 + 19818 746 20662 103553;103554 105095;105096 105096 2 LFTFLPLPEIDHIMQLHVK FFVRQPDDSVERYLKLFTFLPLPEIDHIMQ LPLPEIDHIMQLHVKEPERRGPQKRLAAEV K L F V K E 0 0 0 1 0 1 1 0 2 2 4 1 1 2 2 0 1 0 0 1 0 0 19 0 2290.2548 Q9Y2Z4 Q9Y2Z4 320 338 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 3 1.009E-05 48.547 By MS/MS By MS/MS 1 1 0.97425 0.90169 8.498 2 Median NaN NaN NaN 0 0 Median 1.111 0.95753 NaN 1 0 Median 0.85429 0.8491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4575000 2396000 2179000 0 0 0 1835300 867080 968230 2739700 1528900 1210700 0 0 0 0 0 0 0 0 0 19819 4399 20663 103555;103556 105097;105098;105099;105100 105097 4 LFTLKEEKPK NLVKTRRRAVGWWKRLFTLKEEKPKMYFMT GWWKRLFTLKEEKPKMYFMTMIVSLAAVAW R L F P K M 0 0 0 0 0 0 2 0 0 0 2 3 0 1 1 0 1 0 0 0 0 0 10 2 1231.7176 H3BN98;H3BPJ2;Q15041 H3BN98 126 135 ARL6IP1 ADP-ribosylation factor-like protein 6-interacting protein 1 yes no 3 0.00013497 76.228 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.92344 0.90726 23.052 4 Median 0.89383 0.96796 NaN 1 0 Median 0.94239 0.85037 NaN 1 0 Median 1.2145 1.3704 NaN 1 0 Median 0.90488 0.83203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8474000 4072900 4401000 4230400 2184500 2045800 2115400 1067500 1047900 1697500 590860 1106700 430660 230020 200640 0 0 0 0 0 0 19820 1213 20664 103557;103558;103559;103560 105101;105102;105103 105103 3 LFTLTALR QLVATGAVRDWDDPRLFTLTALRRRGFPPE RDWDDPRLFTLTALRRRGFPPEAINNFCAR R L F L R R 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 8 0 933.56475 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQQ5;A0A1B0GTT3 P47897 516 523 QARS Glutamine--tRNA ligase yes no 2 0.010382 58.981 By MS/MS By matching By matching By matching 1 2 1 1 1.1561 1.0747 16.086 5 Median 1.1561 1.0939 NaN 1 0 Median 1.3276 1.1494 9.5105 2 0 Median NaN NaN NaN 0 0 Median 1.0622 0.90229 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97455 0.82282 NaN 1 0 Median 19673000 9018500 10655000 10599000 4922200 5677200 8559500 3823000 4736500 0 0 0 450960 235780 215180 0 0 0 63378 37448 25930 19821 2356 20665 103561;103562;103563;103564;103565 105104;105105 105105 2 LFTLYEQVSERLR SGRPLYLRLVTDHLRLFTLYEQVSERLRTL LRLFTLYEQVSERLRTLPATVPLLLQHILS R L F L R T 0 2 0 0 0 1 2 0 0 0 3 0 0 1 0 1 1 0 1 1 0 0 13 1 1652.8886 G3V470;G3V2A4;G3V5X7;Q99973 G3V470 1374 1386 TEP1 Telomerase protein component 1 yes no 3 0.031795 20.953 By MS/MS 1 0.88456 0.88256 NaN 1 Median 0.88456 0.88256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12443000 6182500 6260800 12443000 6182500 6260800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19822 1107 20666 103566 105106 105106 1 LFTNFHR LQNKVENFIHKQERRLFTNFHRQLFCWLDK FIHKQERRLFTNFHRQLFCWLDKWVDLTMD R L F H R Q 0 1 1 0 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 933.48209 F5GWE5;Q00169;I3L4H1 F5GWE5 220 226 PITPNA Phosphatidylinositol transfer protein alpha isoform yes no 2 1.9994E-13 149.11 By MS/MS By MS/MS 1 2 2.4205 2.2636 46.676 3 Plateau 2.4205 2.2636 NaN 1 1 Median 1.5791 1.3258 49.492 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38378000 14191000 24186000 26595000 9725900 16869000 11783000 4465500 7317200 0 0 0 0 0 0 0 0 0 0 0 0 19823 997 20667 103567;103568;103569 105107;105108;105109 105107 3 LFTNFSGADLLK AQQWLHRNRFSTFTRLFTNFSGADLLKLTR FTRLFTNFSGADLLKLTRDDVIQICGPADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 1 1 0 0 0 0 0 12 0 1324.7027 Q12800;F8VWL0 Q12800 348 359 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.00051621 76.465 By MS/MS By MS/MS By MS/MS 4 3 1 1.1412 1.1142 22.323 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90453 0.89471 27.391 4 0 Median 1.3405 1.1524 11.397 3 0 Median 1.1906 1.1412 NaN 1 0 Median NaN NaN NaN 0 0 Median 54868000 26101000 28767000 0 0 0 0 0 0 45383000 22013000 23370000 7530100 3222300 4307900 1955200 865670 1089500 0 0 0 19824 2760 20668 103570;103571;103572;103573;103574;103575;103576;103577 105110;105111;105112;105113;105114;105115;105116 105111 7 LFTPDVIR ILKPSTIIGVAGAGRLFTPDVIRAMASINE GVAGAGRLFTPDVIRAMASINERPVIFALS R L F I R A 0 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 8 0 959.54402 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37 A0A1W2PPH1 360 367 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.0029873 102.71 By MS/MS By MS/MS 1 1 1.0987 1.001 6.7076 2 Median 0.99463 0.9546 NaN 1 0 Median 1.2137 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9347500 4676600 4670800 7424600 3822100 3602500 1922800 854500 1068300 0 0 0 0 0 0 0 0 0 0 0 0 19825 337 20669 103578;103579 105117;105118;105119 105118 3 LFTPSPEIVK QLVKETGVTKRTPQKLFTPSPEIVKYTHKL RTPQKLFTPSPEIVKYTHKLAMERLYAVFT K L F V K Y 0 0 0 0 0 0 1 0 0 1 1 1 0 1 2 1 1 0 0 1 0 0 10 0 1129.6383 Q8TCS8 Q8TCS8 276 285 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.0030923 57.96 By MS/MS By MS/MS 1 1 0.9605 0.85308 9.4849 2 Median 0.87698 0.79774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.052 0.91225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13198000 7143800 6054700 10539000 5939300 4599400 0 0 0 0 0 0 2659700 1204400 1455300 0 0 0 0 0 0 19826 3467 20670 103580;103581 105120;105121 105120 2 LFTQILR VFAINDRQSFNEVGKLFTQILRVKDRDDFP QSFNEVGKLFTQILRVKDRDDFPVVLVGNK K L F L R V 0 1 0 0 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 7 0 889.53854 P10301 P10301 122 128 RRAS Ras-related protein R-Ras yes yes 2 0.0026877 118.06 By MS/MS By matching By matching By matching 1 1 1 1 1.2908 1.2216 27.082 4 Median 0.94479 0.89614 NaN 1 0 Median 1.73 1.4713 NaN 1 0 Median 1.0676 1.0143 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5606 1.5483 NaN 1 0 Median NaN NaN NaN 0 0 Median 20717000 9242100 11475000 12350000 5755500 6595000 1325900 487820 838040 2969100 1431200 1537900 0 0 0 4071400 1567600 2503800 0 0 0 19827 1936 20671 103582;103583;103584;103585 105122;105123 105122 2 LFTSDLQDKNEYK PVIKFCTSAADMKIRLFTSDLQDKNEYKVL IRLFTSDLQDKNEYKVLEGHTDFINGLVFD R L F Y K V 0 0 1 2 0 1 1 0 0 0 2 2 0 1 0 1 1 0 1 0 0 0 13 1 1599.7781 Q8NFH4;F8VTY2 Q8NFH4 106 118 NUP37 Nucleoporin Nup37 yes no 2;3 2.7224E-07 101.6 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 4 1 1 1.1844 1.0917 11.737 11 Median NaN NaN NaN 0 0 Median 1.198 1.0795 1.5876 2 0 Median 1.0268 1.067 6.2667 3 0 Median 1.2754 1.1278 9.7005 4 1 Median 1.0417 1.0967 NaN 1 0 Median 1.7792 1.5198 NaN 1 0 Median 117510000 55130000 62383000 0 0 0 5337700 2289600 3048200 81680000 39198000 42482000 26759000 11799000 14960000 3162200 1576600 1585600 573850 266320 307540 19828 3436 20672 103586;103587;103588;103589;103590;103591;103592;103593;103594;103595;103596 105124;105125;105126;105127;105128;105129;105130;105131;105132;105133 105125 10 LFTSTGLKK SSQERMKVQGSPLKKLFTSTGLKKLSGKKQ GSPLKKLFTSTGLKKLSGKKQKGKRGGGDE K L F K K L 0 0 0 0 0 0 0 1 0 0 2 2 0 1 0 1 2 0 0 0 0 0 9 1 993.58588 Q02952 Q02952 519 527 AKAP12 A-kinase anchor protein 12 yes yes 2 0.066188 31.934 By MS/MS 1 1.5493 1.6749 NaN 1 Median 1.5493 1.6749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1680900 610550 1070400 1680900 610550 1070400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19829 2705 20673 103597 105134 105134 1 LFTTMELMR DKKLEEIPKYKDLLKLFTTMELMRWSTLVE YKDLLKLFTTMELMRWSTLVEDYGMELRKG K L F M R W 0 1 0 0 0 0 1 0 0 0 2 0 2 1 0 0 2 0 0 0 0 0 9 0 1140.5671 O00232 O00232 308 316 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0074886 57.177 By MS/MS By matching By MS/MS 1 2 1 1.3454 1.2404 19.51 4 Median 1.3157 1.2475 NaN 1 0 Median 1.3317 1.1568 9.0474 2 0 Median 1.7326 1.716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35721000 15405000 20315000 17778000 8120300 9657800 9526500 4317600 5208900 8416000 2967500 5448500 0 0 0 0 0 0 0 0 0 19830 1449 20674 103598;103599;103600;103601 105135;105136;105137 105135 3 LFTTTEQDEQGSK VPGICQFLTEETKHRLFTTTEQDEQGSKVS HRLFTTTEQDEQGSKVSDFFDQSSFLHNEM R L F S K V 0 0 0 1 0 2 2 1 0 0 1 1 0 1 0 1 3 0 0 0 0 0 13 0 1482.6838 Q14573 Q14573 2155 2167 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 1.166E-05 145.46 By MS/MS 1 1.2354 1.0811 NaN 1 Median NaN NaN NaN 0 0 Median 1.2354 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6201300 2809000 3392300 0 0 0 6201300 2809000 3392300 0 0 0 0 0 0 0 0 0 0 0 0 19831 2883 20675 103602 105138;105139 105139 2 LFVDTDADTR LAFYSQEVRDLFQMKLFVDTDADTRLSRRV LFQMKLFVDTDADTRLSRRVLRDISERGRD K L F T R L 1 1 0 3 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 10 0 1151.5459 A0A2R8Y653;Q9BZX2 A0A2R8Y653 132 141 UCK2 Uridine-cytidine kinase 2 yes no 2 0.0024839 74.464 By MS/MS 1 0.25396 0.2374 NaN 1 Median 0.25396 0.2374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33524000 28544000 4979500 33524000 28544000 4979500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19832 374 20676 103603 105140 105140 1 LFVEALGQIGPAPPLK ADFSVPLIIDIKCTKLFVEALGQIGPAPPL FVEALGQIGPAPPLKVHVDCMTSQKLVRLP K L F L K V 2 0 0 0 0 1 1 2 0 1 3 1 0 1 3 0 0 0 0 1 0 0 16 0 1648.9552 F8VPD4;P27708 F8VPD4 1372 1387 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0052043 33.225 By MS/MS By MS/MS 1 2 0.6727 0.59426 18.545 3 Median 0.74763 0.70599 NaN 1 0 Median 0.60598 0.53816 14.023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3372900 2004000 1368900 1091700 591760 499960 2281200 1412200 868960 0 0 0 0 0 0 0 0 0 0 0 0 19833 1057 20677 103604;103605;103606 105141;105142;105143 105141 3 LFVEQLEEFMTK HLKSACEQFIQQQTKLFVEQLEEFMTKVSA QTKLFVEQLEEFMTKVSALKTMASQGGPKY K L F T K V 0 0 0 0 0 1 3 0 0 0 2 1 1 2 0 0 1 0 0 1 0 0 12 0 1512.7534 Q96JB2 Q96JB2 707 718 COG3 Conserved oligomeric Golgi complex subunit 3 yes yes 2 0.029201 28.727 By MS/MS By MS/MS 1 1 1.3512 1.2841 1.1637 2 Median 1.2576 1.2736 NaN 1 0 Median 1.4517 1.2947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2275900 990240 1285700 1019300 495020 524250 1256600 495210 761420 0 0 0 0 0 0 0 0 0 0 0 0 19834 3683 20678 103607;103608 105144;105145;105146 105146 3 LFVGFLNR KWAPFVQENLLMYTKLFVGFLNRALRTDLV NLLMYTKLFVGFLNRALRTDLVSPKHALMV K L F N R A 0 1 1 0 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 964.54944 Q9NXE4;H7C1Q6;H7C0W5;H7C2J2;H7C235;H7C2E2 Q9NXE4 483 490 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0062036 72.234 By matching By MS/MS By matching 1 2 1 1.232 1.1259 15.012 4 Median NaN NaN NaN 0 0 Median 1.2211 1.0983 NaN 1 0 Median 1.0484 1.1097 25.725 2 0 Median 1.3643 1.1541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8391700 4104300 4287400 0 0 0 247240 119450 127790 7767400 3846500 3920900 377080 138390 238690 0 0 0 0 0 0 19835 4162 20679 103609;103610;103611;103612 105147;105148;105149 105149 3 LFVGGIKEDTEEHHLR REESGKPGAHVTVKKLFVGGIKEDTEEHHL FVGGIKEDTEEHHLRDYFEEYGKIDTIEII K L F L R D 0 1 0 1 0 0 3 2 2 1 2 1 0 1 0 0 1 0 0 1 0 0 16 1 1878.9588 P22626;A0A087WUI2 P22626 114 129 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3;4 1.2901E-81 200.82 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 8 10 10 20 23 1.0791 1.0814 23.351 73 Median 1.1613 1.2441 40.648 5 0 Median 1.2197 1.134 20.639 8 0 Median 0.99724 1.1111 8.2701 10 0 Median 1.2968 1.1442 13.616 10 0 Median 0.99676 1.0724 19.438 20 2 Median 1.1643 0.97919 22.862 20 0 Median 10232000000 4798700000 5433500000 22539000 9598000 12941000 90137000 39168000 50969000 5473600000 2635200000 2838400000 1120800000 486520000 634270000 1116500000 543310000 573220000 2408700000 1084900000 1323700000 19836 2103 20680 103613;103614;103615;103616;103617;103618;103619;103620;103621;103622;103623;103624;103625;103626;103627;103628;103629;103630;103631;103632;103633;103634;103635;103636;103637;103638;103639;103640;103641;103642;103643;103644;103645;103646;103647;103648;103649;103650;103651;103652;103653;103654;103655;103656;103657;103658;103659;103660;103661;103662;103663;103664;103665;103666;103667;103668;103669;103670;103671;103672;103673;103674;103675;103676;103677;103678;103679;103680;103681;103682;103683;103684;103685;103686;103687;103688 105150;105151;105152;105153;105154;105155;105156;105157;105158;105159;105160;105161;105162;105163;105164;105165;105166;105167;105168;105169;105170;105171;105172;105173;105174;105175;105176;105177;105178;105179;105180;105181;105182;105183;105184;105185;105186;105187;105188;105189;105190;105191;105192;105193;105194;105195;105196;105197;105198;105199;105200;105201;105202;105203;105204;105205;105206;105207;105208;105209;105210;105211;105212;105213;105214;105215;105216;105217;105218;105219;105220;105221;105222;105223;105224;105225;105226;105227;105228;105229;105230;105231;105232;105233;105234;105235;105236;105237;105238;105239;105240;105241;105242;105243;105244;105245;105246;105247;105248;105249;105250;105251;105252;105253;105254;105255;105256;105257;105258;105259;105260;105261;105262;105263;105264;105265;105266;105267;105268;105269;105270;105271;105272;105273;105274;105275;105276 105253 125 LFVGGLDWSTTQETLR ______________________________ FVGGLDWSTTQETLRSYFSQYGEVVDCVIM K L F L R S 0 1 0 1 0 1 1 2 0 0 3 0 0 1 0 1 3 1 0 1 0 0 16 0 1821.9261 K7EQ55;K7EK33;Q96EP5;K7EQ02 K7EQ55 12 27 DAZAP1 DAZ-associated protein 1 yes no 2 3.5009E-10 140.31 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 4 3 1 1.2504 1.0698 12.116 11 Median 1.0804 1.0674 NaN 1 0 Median 1.0796 0.92278 NaN 1 0 Median 0.99921 0.95994 NaN 1 0 Median 1.2911 1.0798 2.9181 4 0 Median 1.2504 1.331 15.576 3 2 Median 1.2643 1.0846 NaN 1 0 Median 195360000 95016000 100340000 4341900 2051400 2290500 380590 203480 177100 127910000 65761000 62147000 21457000 9286700 12170000 25888000 11670000 14218000 15384000 6043100 9340400 19837 1367 20681 103689;103690;103691;103692;103693;103694;103695;103696;103697;103698;103699 105277;105278;105279;105280;105281;105282;105283;105284 105283 8 LFVGGLK REDSARPGAHAKVKKLFVGGLKGDVAEGDL GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF K L F L K G 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 7 0 732.45341 Q13151 Q13151 100 106 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 1 0.0052033 72.021 By MS/MS By matching 2 1 1.3077 1.1059 11.317 3 Median NaN NaN NaN 0 0 Median 1.2961 1.1023 16.003 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3077 1.1059 NaN 1 0 Median 11020000 4958200 6061500 0 0 0 9882900 4477100 5405800 0 0 0 0 0 0 0 0 0 1136800 481050 655740 19838 2790 20682 103700;103701;103702 105285 105285 1 LFVGLEHAVPTFNVK QKPPFQSGMHYVQDKLFVGLEHAVPTFNVK LFVGLEHAVPTFNVKEKVEGPGCSYLQHIQ K L F V K E 1 0 1 0 0 0 1 1 1 0 2 1 0 2 1 0 1 0 0 3 0 0 15 0 1669.9192 Q7Z7F0 Q7Z7F0 235 249 KIAA0907 UPF0469 protein KIAA0907 yes yes 3 0.055013 11.262 By MS/MS By matching 1 1 0.82419 0.78827 15.341 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82894 0.87859 NaN 1 0 Median 0.81946 0.70723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4883900 2801900 2081900 0 0 0 0 0 0 4686000 2694800 1991200 197900 107130 90766 0 0 0 0 0 0 19839 3256 20683 103703;103704 105286 105286 1 LFVGNLPADITEDEFK LLRRPGEKTYTQRCRLFVGNLPADITEDEF FVGNLPADITEDEFKRLFAKYGEPGEVFIN R L F F K R 1 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 16 0 1806.904 P23246 P23246 299 314 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 2.0844E-06 86.814 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.91784 0.93726 11.61 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80556 0.85825 6.999 2 0 Median 1.1429 0.98845 2.6659 3 0 Median 0.91784 0.93726 NaN 1 0 Median 0.85667 0.72096 NaN 1 0 Median 112540000 57089000 55454000 0 0 0 0 0 0 84013000 43429000 40584000 16013000 7232200 8780900 12264000 6323300 5940900 252250 103790 148470 19840 2107 20684 103705;103706;103707;103708;103709;103710;103711 105287;105288;105289;105290;105291;105292;105293;105294 105290 8 LFVGNLPADITEDEFKR LLRRPGEKTYTQRCRLFVGNLPADITEDEF VGNLPADITEDEFKRLFAKYGEPGEVFINK R L F K R L 1 1 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 17 1 1963.0051 P23246 P23246 299 315 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 2.2165E-14 132.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 7 5 4 1.0543 1.0529 15.489 29 Median 1.2577 1.3047 10.038 4 0 Median 0.994 0.99227 6.2992 3 0 Median 0.83923 0.96886 14.738 6 0 Median 1.1901 1.0847 5.3779 7 0 Median 0.9156 0.99631 10.701 5 0 Median 1.2187 1.0795 17.866 4 0 Median 818650000 399780000 418870000 10062000 4457500 5604500 46667000 22699000 23968000 531910000 263480000 268430000 77531000 33710000 43821000 142340000 71214000 71127000 10137000 4214500 5922800 19841 2107 20685 103712;103713;103714;103715;103716;103717;103718;103719;103720;103721;103722;103723;103724;103725;103726;103727;103728;103729;103730;103731;103732;103733;103734;103735;103736;103737;103738;103739;103740 105295;105296;105297;105298;105299;105300;105301;105302;105303;105304;105305;105306;105307;105308;105309;105310;105311;105312;105313;105314;105315;105316;105317;105318;105319;105320;105321;105322;105323;105324;105325;105326;105327;105328;105329;105330;105331;105332 105304 37 LFVGNLPPDITEEEMR NFRKPGEKTFTQRSRLFVGNLPPDITEEEM FVGNLPPDITEEEMRKLFEKYGKAGEVFIH R L F M R K 0 1 1 1 0 0 3 1 0 1 2 0 1 1 2 0 1 0 0 1 0 0 16 0 1858.9135 Q15233;C9JYS8;C9IZL7;C9J4X2 Q15233 76 91 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 3.9809E-20 182.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 9 7 6 3 0.8828 0.8207 12.604 25 Median 0.89622 0.86961 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70336 0.68966 15.426 8 2 Median 1.0018 0.85624 5.8893 7 0 Median 0.77182 0.79766 6.6773 6 0 Median 1.1218 0.91087 8.4703 3 0 Plateau 879530000 491860000 387670000 5347900 2828700 2519200 0 0 0 777810000 440610000 337200000 66390000 31974000 34416000 27707000 15361000 12346000 2277700 1087800 1189800 19842 2935 20686;20687 103741;103742;103743;103744;103745;103746;103747;103748;103749;103750;103751;103752;103753;103754;103755;103756;103757;103758;103759;103760;103761;103762;103763;103764;103765;103766 105333;105334;105335;105336;105337;105338;105339;105340;105341;105342;105343;105344;105345;105346;105347;105348;105349;105350;105351;105352;105353;105354;105355;105356;105357;105358;105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375;105376;105377;105378;105379;105380;105381;105382;105383;105384;105385;105386;105387;105388;105389;105390;105391;105392;105393;105394;105395 105359 1617 63 LFVGNLPPDITEEEMRK NFRKPGEKTFTQRSRLFVGNLPPDITEEEM VGNLPPDITEEEMRKLFEKYGKAGEVFIHK R L F R K L 0 1 1 1 0 0 3 1 0 1 2 1 1 1 2 0 1 0 0 1 0 0 17 1 1987.0085 Q15233;C9JYS8;C9IZL7;C9J4X2 Q15233 76 92 NONO Non-POU domain-containing octamer-binding protein yes no 3 5.331E-06 73.707 By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 0.97679 0.96421 19.986 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71494 0.80748 7.6541 2 0 Median 1.2626 1.1848 10.13 3 0 Plateau 0.79174 0.81225 30.178 3 0 Median 1.0438 0.96421 NaN 1 0 Median 121750000 68921000 52830000 0 0 0 0 0 0 107220000 61428000 45796000 2178800 985340 1193500 12130000 6415000 5715300 217890 92839 125050 19843 2935 20688;20689 103767;103768;103769;103770;103771;103772;103773;103774;103775 105396;105397;105398;105399;105400;105401;105402;105403;105404;105405;105406 105400 1617 11 LFVGNLPTDITEEDFK SFLKPGEKTYTQRCRLFVGNLPTDITEEDF FVGNLPTDITEEDFKRLFERYGEPSEVFIN R L F F K R 0 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 2 0 0 1 0 0 16 0 1836.9145 Q8WXF1;X6RDA4 Q8WXF1 84 99 PSPC1 Paraspeckle component 1 yes no 2 8.4051E-05 74.76 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 0.87338 0.75301 14.403 6 Median 0.98298 0.95164 NaN 1 0 Median 0.82867 0.71627 NaN 1 0 Median 0.66455 0.67277 9.213 2 0 Median 0.95339 0.81566 4.5811 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63495000 36276000 27218000 1365400 712730 652650 1755200 920790 834440 53352000 30509000 22844000 7021700 4134300 2887400 0 0 0 0 0 0 19844 3520 20690 103776;103777;103778;103779;103780;103781 105407;105408;105409;105410;105411;105412 105412 6 LFVGNLPTDITEEDFKR SFLKPGEKTYTQRCRLFVGNLPTDITEEDF VGNLPTDITEEDFKRLFERYGEPSEVFINR R L F K R L 0 1 1 2 0 0 2 1 0 1 2 1 0 2 1 0 2 0 0 1 0 0 17 1 1993.0157 Q8WXF1;X6RDA4 Q8WXF1 84 100 PSPC1 Paraspeckle component 1 yes no 2;3 4.0042E-12 104.41 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 3 3 1 0.92979 0.88782 17.44 14 Median 1.2899 1.2945 NaN 1 0 Median 0.98428 0.89798 16.619 2 0 Median 0.67632 0.76156 15.535 4 1 Median 1.0646 1.02 8.3718 3 0 Median 0.78337 0.80291 8.1472 3 0 Plateau 1.0065 0.91963 NaN 1 0 Median 245410000 134970000 110440000 8850900 3573900 5277000 15490000 7951700 7537900 188940000 107250000 81690000 16740000 8131000 8609100 14165000 7458300 6706500 1219000 602660 616290 19845 3520 20691 103782;103783;103784;103785;103786;103787;103788;103789;103790;103791;103792;103793;103794;103795 105413;105414;105415;105416;105417;105418;105419;105420;105421;105422;105423;105424;105425;105426;105427 105417 14 LFVGSIPK PGKHLGVCISVANNRLFVGSIPKNKTKENI ISVANNRLFVGSIPKNKTKENILEEFSKVT R L F P K N 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 8 0 859.51674 B7Z645;O43390;B4DT28;O60506 O43390 248 255 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 1;2 0.0052665 76.774 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 6 8 6 1.0255 0.91178 9.4624 27 Median 1.0933 1.0246 NaN 1 0 Median 1.1014 0.92156 6.2245 3 0 Median 0.93114 0.91178 5.3624 3 1 Median 1.0444 0.88918 14.757 6 0 Median 0.91333 0.91532 6.4497 8 0 Median 1.1328 0.91855 10.403 6 0 Median 706660000 356460000 350190000 14092000 6754200 7337600 18927000 8966800 9960300 218650000 113330000 105320000 43539000 20799000 22740000 338900000 173990000 164910000 72549000 32618000 39931000 19846 1568;1619;634 20692 103796;103797;103798;103799;103800;103801;103802;103803;103804;103805;103806;103807;103808;103809;103810;103811;103812;103813;103814;103815;103816;103817;103818;103819;103820;103821;103822;103823;103824 105428;105429;105430;105431;105432;105433;105434;105435;105436;105437;105438;105439;105440;105441;105442;105443;105444;105445;105446;105447;105448;105449 105446 20 LFVIAQK KQYNCLTQRIEREKKLFVIAQKIQTRKDLM QRIEREKKLFVIAQKIQTRKDLMDKTQKVK K L F Q K I 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 817.50617 Q9Y3A2 Q9Y3A2 212 218 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.01617 69.39 By MS/MS By matching 1 1 1.223 1.1133 14.008 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.238 1.2293 NaN 1 0 Median 1.2082 1.0083 NaN 1 0 Median 5118900 1956300 3162600 0 0 0 0 0 0 0 0 0 0 0 0 3726800 1300700 2426100 1392100 655550 736550 19847 4410 20693 103825;103826 105450 105450 1 LFVIRPSR KAAAPVRHSGDHGKRLFVIRPSRFYDRRFL SGDHGKRLFVIRPSRFYDRRFLKLLALYEQ R L F S R F 0 2 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 H0Y886;O43674;H7C568;A0A087WYD0 H0Y886 51 58 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 2 0.025523 76.035 By MS/MS By MS/MS 1 1 1.1049 1.082 24.013 2 Median 0.87103 0.91299 NaN 1 0 Median 1.4016 1.2822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17534000 8431400 9102900 13583000 6588100 6994400 3951900 1843300 2108500 0 0 0 0 0 0 0 0 0 0 0 0 19848 1159 20694 103827;103828 105451;105452 105452 2 LFVKVEK SAKGLLDDLRNDLDRLFVKVEKIHEKV___ DLRNDLDRLFVKVEKIHEKV__________ R L F E K I 0 0 0 0 0 0 1 0 0 0 1 2 0 1 0 0 0 0 0 2 0 0 7 1 861.53239 Q07065 Q07065 591 597 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.051408 81.297 By MS/MS 1 1.2394 1.1753 NaN 1 Median 1.2394 1.1753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3127900 1379100 1748800 3127900 1379100 1748800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19849 2730 20695 103829 105453 105453 1 LFVLLPEQSPVSYSK SHLWKLLDRHANTIRLFVLLPEQSPVSYSK LFVLLPEQSPVSYSKRTAYQKAGGDSGNVD R L F S K R 0 0 0 0 0 1 1 0 0 0 3 1 0 1 2 3 0 0 1 2 0 0 15 0 1705.9291 Q96K76 Q96K76 824 838 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 1.764E-05 73.067 By MS/MS 2 0.83577 0.80345 4.2657 2 Median 0.83577 0.80345 4.2657 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11804000 6026200 5778300 11804000 6026200 5778300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19850 3690 20696 103830;103831 105454;105455 105454 2 LFVNAQR VTGAGRGHAGRIIHKLFVNAQRAAAMTPPE HAGRIIHKLFVNAQRAAAMTPPEEELKRMG K L F Q R A 1 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 846.47119 Q15042 Q15042 897 903 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes yes 2 0.023603 56.51 By MS/MS 1 1.3845 1.1881 NaN 1 Median NaN NaN NaN 0 0 Median 1.3845 1.1881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1923000 880890 1042100 0 0 0 1923000 880890 1042100 0 0 0 0 0 0 0 0 0 0 0 0 19851 2918 20697 103832 105456 105456 1 LFVQDEK VQVGLHELLGHGSGKLFVQDEKGAFNFDQE LLGHGSGKLFVQDEKGAFNFDQETVINPET K L F E K G 0 0 0 1 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 877.45453 G3V1D3;G3V180;Q9NY33 G3V1D3 479 485 DPP3 Dipeptidyl peptidase 3 yes no 2 0.010865 81.297 By MS/MS By MS/MS 1 1 1.1895 1.0633 10.388 2 Median 1.0807 0.98801 NaN 1 0 Median 1.3093 1.1444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14420000 6555800 7864200 8701700 4342400 4359300 5718200 2213400 3504800 0 0 0 0 0 0 0 0 0 0 0 0 19852 1102 20698 103833;103834 105457;105458;105459 105459 3 LFVQDLATR ETVAKELQTLHNLRKLFVQDLATRVKKSAE LHNLRKLFVQDLATRVKKSAEIDSDDTGGS K L F T R V 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 9 0 1061.5869 P33176 P33176 802 810 KIF5B Kinesin-1 heavy chain yes yes 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS 1 1 1 1.1724 1.1194 10.536 3 Plateau 1.1724 1.1275 NaN 1 0 Median 1.2199 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0724 0.91341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41644000 21107000 20538000 29626000 15711000 13915000 10161000 4487700 5673600 0 0 0 1856700 907950 948770 0 0 0 0 0 0 19853 2221 20699 103835;103836;103837 105460;105461;105462;105463 105461 4 LFVSGACDASAK HTGDVMSLSLAPDTRLFVSGACDASAKLWD DTRLFVSGACDASAKLWDVREGMCRQTFTG R L F A K L 3 0 0 1 1 0 0 1 0 0 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1224.5809 P62873;B3KVK2 P62873 198 209 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 2 3.2326E-06 109.42 By MS/MS 1 1.2472 1.046 NaN 1 Median NaN NaN NaN 0 0 Median 1.2472 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21533000 9200300 12332000 0 0 0 21533000 9200300 12332000 0 0 0 0 0 0 0 0 0 0 0 0 19854 2603 20700 103838 105464;105465 105465 2 LFVTNDAATILR GPNGMNKMVINHLEKLFVTNDAATILRELE LEKLFVTNDAATILRELEVQHPAAKMIVMA K L F L R E 2 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1332.7402 P50990;H7C4C8 P50990 63 74 CCT8 T-complex protein 1 subunit theta yes no 2 3.1802E-06 155.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 8 1 1 1 2 1.2959 1.163 24.156 18 Median 1.3125 1.2236 13.544 5 1 Median 1.2559 1.0653 15.799 8 0 Median 1.252 1.2356 NaN 1 0 Median 1.2837 1.1009 NaN 1 0 Median 1.965 1.9744 NaN 1 0 Median 1.8854 1.5872 45.631 2 0 Median 260720000 114170000 146560000 145700000 63696000 82002000 62308000 28411000 33897000 40553000 17707000 22846000 3376300 1429900 1946400 6923100 2147800 4775300 1866000 774000 1092000 19855 2423 20701 103839;103840;103841;103842;103843;103844;103845;103846;103847;103848;103849;103850;103851;103852;103853;103854;103855;103856 105466;105467;105468;105469;105470;105471;105472;105473;105474;105475;105476;105477;105478;105479;105480;105481;105482;105483;105484;105485;105486;105487 105466 22 LFVVDHVIK LIALIWPSEWQMIQKLFVVDHVIKITRIEV WQMIQKLFVVDHVIKITRIEVGDVNPSETQ K L F I K I 0 0 0 1 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 3 0 0 9 0 1068.6332 Q86UV5;A0A0A0MRS6 Q86UV5 810 818 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.0054507 57.59 By MS/MS By MS/MS 2 2 1.2004 1.1639 13.567 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0835 1.1639 6.8757 2 0 Median 1.4692 1.2698 20.716 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25373000 11420000 13953000 0 0 0 0 0 0 21919000 10188000 11732000 3453500 1232400 2221200 0 0 0 0 0 0 19856 3281 20702 103857;103858;103859;103860 105488;105489;105490 105488 3 LFVVPADEAQAR AALRDNHTHSDIQVKLFVVPADEAQARIPY QVKLFVVPADEAQARIPYARVNHNKYMVTE K L F A R I 3 1 0 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 12 0 1314.6932 Q8IV08 Q8IV08 397 408 PLD3 Phospholipase D3 yes yes 2 0.0021384 77.677 By MS/MS 1 0.34428 0.34008 NaN 1 Median 0.34428 0.34008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4357800 3540000 817840 4357800 3540000 817840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19857 3316 20703 103861 105491 105491 1 LFVWEILHSTIR ANWIFSSELSRDFTRLFVWEILHSTIRKMN FTRLFVWEILHSTIRKMNKHVLKIQKELEE R L F I R K 0 1 0 0 0 0 1 0 1 2 2 0 0 1 0 1 1 1 0 1 0 0 12 0 1512.8453 Q09161 Q09161 635 646 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.00087971 59.757 By MS/MS 1 1.1375 0.98312 NaN 1 Median NaN NaN NaN 0 0 Median 1.1375 0.98312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9370000 4456800 4913200 0 0 0 9370000 4456800 4913200 0 0 0 0 0 0 0 0 0 0 0 0 19858 2747 20704 103862 105492;105493 105492 2 LFVYDPNNPPSSEVLR SSGDIWVGCHPNGQKLFVYDPNNPPSSEVL FVYDPNNPPSSEVLRIQNILSEKPTVTTVY K L F L R I 0 1 2 1 0 0 1 0 0 0 2 0 0 1 3 2 0 0 1 2 0 0 16 0 1845.9261 A0A0J9YXF2;Q15165 A0A0J9YXF2 311 326 PON2 Serum paraoxonase/arylesterase 2 yes no 2 2.6585E-08 100.55 By MS/MS 2 0.64033 0.63595 1.6182 2 Median 0.64033 0.63595 1.6182 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15013000 8615800 6397500 15013000 8615800 6397500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19859 293 20705 103863;103864 105494;105495 105495 2 LFYADHPFIFLVR FDQDIYGREELRSPKLFYADHPFIFLVRDT PKLFYADHPFIFLVRDTQSGSLLFIGRLVR K L F V R D 1 1 0 1 0 0 0 0 1 1 2 0 0 3 1 0 0 0 1 1 0 0 13 0 1636.8766 P50454;E9PKH2;H0YEP8 P50454 381 393 SERPINH1 Serpin H1 yes no 2;3 0.0048851 39.022 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 3 3 1 2 3 1.0961 1.0082 16.368 16 Median 1.0442 1.0039 17.439 4 0 Median 1.0928 0.92494 7.5589 3 0 Plateau 0.87823 0.87097 13.655 3 0 Median 1.1206 0.98302 NaN 1 0 Median 1.2338 1.2499 15.558 2 0 Median 1.2578 1.0743 2.6532 3 0 Plateau 41103000 19993000 21111000 14878000 7233700 7644400 10197000 4899000 5298000 13244000 6614900 6629400 167540 88744 78792 1765600 745610 1020000 850720 410700 440020 19860 2414 20706 103865;103866;103867;103868;103869;103870;103871;103872;103873;103874;103875;103876;103877;103878;103879;103880 105496;105497;105498;105499;105500;105501;105502;105503;105504;105505;105506 105505 11 LFYHIVDSDEVSTK EPAFYTCVEVTAGNRLFYHIVDSDEVSTKI RLFYHIVDSDEVSTKILMEFNKMNLPGEVT R L F T K I 0 0 0 2 0 0 1 0 1 1 1 1 0 1 0 2 1 0 1 2 0 0 14 0 1651.8094 Q9UQE7 Q9UQE7 558 571 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 5.4319E-08 123.8 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1 1.3668 1.3709 23.446 8 Median NaN NaN NaN 0 0 Median 1.5612 1.3445 NaN 1 0 Median 1.3452 1.4293 2.223 2 0 Median 1.2606 1.0909 NaN 1 0 Median 1.3674 1.3978 38.755 3 1 Median 1.3861 1.1375 NaN 1 0 Median 186870000 83689000 103180000 0 0 0 724560 338950 385610 104660000 48073000 56583000 5396800 2155200 3241500 70803000 30965000 39838000 5286200 2156700 3129500 19861 4362 20707 103881;103882;103883;103884;103885;103886;103887;103888 105507;105508;105509;105510;105511;105512;105513;105514;105515;105516 105514 10 LFYLALPPTVYEAVTK NSHMNALHLGSQANRLFYLALPPTVYEAVT FYLALPPTVYEAVTKNIHESCMSQIGWNRI R L F T K N 2 0 0 0 0 0 1 0 0 0 3 1 0 1 2 0 2 0 2 2 0 0 16 0 1824.0073 P11413;E7EUI8;E9PD92;E7EM57 P11413 137 152 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 0.0036056 35.414 By MS/MS By MS/MS 2 1 0.76163 0.76694 0.52611 3 Plateau 0.78642 0.76313 0.70407 2 0 Median NaN NaN NaN 0 0 Median 0.75129 0.76538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6674800 3646300 3028500 5322500 2880000 2442500 0 0 0 1352300 766370 585970 0 0 0 0 0 0 0 0 0 19862 1964 20708 103889;103890;103891 105517;105518 105517 2 LFYNFDK AEERRDVSLKDCMRRLFYNFDKNYKDWQSA SLKDCMRRLFYNFDKNYKDWQSAVECIAVL R L F D K N 0 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 7 0 945.45962 P52701;A0A494C0M1;A0A087WWJ1;A0A087WYT6 P52701 1036 1042 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.016334 68.915 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 1.2646 1.1493 20.034 7 Median 1.016 0.97588 NaN 1 0 Median 1.6423 1.4445 NaN 1 0 Median 1.3859 1.49 NaN 1 0 Median 1.4332 1.26 13.009 2 0 Median NaN NaN NaN 0 0 Median 1.1443 0.96572 6.0629 2 0 Median 16161000 7059100 9102200 4973300 2381000 2592200 2095500 832130 1263400 6960400 2953700 4006800 1840200 785360 1054900 0 0 0 291900 106900 185000 19863 2453 20709 103892;103893;103894;103895;103896;103897;103898 105519;105520;105521 105520 3 LFYSTFATDDR AFEMTLTEGSKLEKKLFYSTFATDDRKEGM LEKKLFYSTFATDDRKEGMTAFVEKRKANF K L F D R K 1 1 0 2 0 0 0 0 0 0 1 0 0 2 0 1 2 0 1 0 0 0 11 0 1334.6143 P30084 P30084 262 272 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 0.00018754 109.66 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3979 1.2407 27.114 4 Median 1.3248 1.257 NaN 1 0 Median 1.7214 1.4622 NaN 1 0 Median 0.83493 0.7797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.475 1.2246 NaN 1 0 Median 16018000 6648700 9369700 13587000 5670000 7916900 1774000 648310 1125700 537480 280920 256560 0 0 0 0 0 0 119990 49481 70509 19864 2186 20710 103899;103900;103901;103902 105522;105523 105522 2 LFYSTFATDDRK AFEMTLTEGSKLEKKLFYSTFATDDRKEGM EKKLFYSTFATDDRKEGMTAFVEKRKANFK K L F R K E 1 1 0 2 0 0 0 0 0 0 1 1 0 2 0 1 2 0 1 0 0 0 12 1 1462.7092 P30084 P30084 262 273 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 2.638E-09 173.37 By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1.1032 1.1463 38.517 8 Median 1.0787 1.1197 2.2929 2 0 Median 1.5622 1.4442 13.857 3 0 Median 1.1097 1.1547 NaN 1 0 Median 0.73751 0.6266 38.867 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171850000 78597000 93250000 147920000 68601000 79320000 15724000 6298700 9425500 7326700 3181700 4145000 875370 515360 360010 0 0 0 0 0 0 19865 2186 20711 103903;103904;103905;103906;103907;103908;103909;103910 105524;105525;105526;105527;105528;105529;105530;105531;105532;105533 105527 10 LFYVPQRPYMTLGTLR WPLFGGRLTKPERGKLFYVPQRPYMTLGTL FYVPQRPYMTLGTLRDQVIYPDGREDQKRK K L F L R D 0 2 0 0 0 1 0 1 0 0 3 0 1 1 2 0 2 0 2 1 0 0 16 1 1954.0499 P28288 P28288 505 520 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 4.3313E-05 56.599 By MS/MS By matching By matching 3 1 1 0.91089 0.98052 20.935 5 Median 0.91688 0.98986 16.156 3 0 Median 0.78119 0.73217 NaN 1 0 Median 0.79054 0.88218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16499000 8901600 7597800 14748000 7873700 6873900 667920 421020 246900 1083900 606830 477030 0 0 0 0 0 0 0 0 0 19866 2163 20712 103911;103912;103913;103914;103915 105534;105535 105535 2 LGAAAADAVTGR APKNGSSSDSSVGEKLGAAAADAVTGRTEE GEKLGAAAADAVTGRTEEYRRRRHTMDKDS K L G G R T 5 1 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1071.5673 F5GWT4;Q9H4A3;F6UYG0 F5GWT4 39 50 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 3.7563E-05 96.015 By MS/MS By MS/MS 2 1 0.83864 0.7992 4.6989 3 Median 0.8273 0.82365 4.2613 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93355 0.77379 NaN 1 1 Median 11657000 5669800 5987100 6208700 3109000 3099700 0 0 0 0 0 0 0 0 0 0 0 0 5448200 2560800 2887400 19867 1001 20713 103916;103917;103918 105536;105537;105538 105536 3 LGAAALVPEAQDSQVTSTK ERKPESLSKVSIIKRLGAAALVPEAQDSQV ALVPEAQDSQVTSTKSPTVRCVLPDPPVPP R L G T K S 4 0 0 1 0 2 1 1 0 0 2 1 0 0 1 2 2 0 0 2 0 0 19 0 1884.9793 A0A2R8Y6U9;Q8N9M1 A0A2R8Y6U9 86 104 C19orf47 Uncharacterized protein C19orf47 yes no 2 0.00017432 39.219 By MS/MS 1 0.85879 0.85386 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85879 0.85386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2692900 1370900 1322000 0 0 0 0 0 0 2692900 1370900 1322000 0 0 0 0 0 0 0 0 0 19868 377 20714 103919 105539 105539 1 LGAAPEEESAYVAGEK GETSKPRPFAGGGYRLGAAPEEESAYVAGE GAAPEEESAYVAGEKRQHSSQDVHVVLKLW R L G E K R 4 0 0 0 0 0 4 2 0 0 1 1 0 0 1 1 0 0 1 1 0 0 16 0 1619.7679 Q9UNZ2;F2Z2K0 Q9UNZ2 157 172 NSFL1C NSFL1 cofactor p47 yes no 2 2.4001E-05 83.314 By MS/MS By MS/MS By MS/MS 2 3 2 0.83629 0.77143 13.12 7 Median 0.80441 0.75101 5.5587 2 0 Median 0.96238 0.83435 8.5414 3 0 Median 0.61458 0.64361 4.2874 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42906000 22787000 20119000 12896000 6650700 6245000 22327000 11528000 10799000 7683500 4608600 3074900 0 0 0 0 0 0 0 0 0 19869 4353 20715 103920;103921;103922;103923;103924;103925;103926 105540;105541;105542;105543;105544;105545 105540 6 LGAAPEEESAYVAGEKR GETSKPRPFAGGGYRLGAAPEEESAYVAGE AAPEEESAYVAGEKRQHSSQDVHVVLKLWK R L G K R Q 4 1 0 0 0 0 4 2 0 0 1 1 0 0 1 1 0 0 1 1 0 0 17 1 1775.869 Q9UNZ2;F2Z2K0 Q9UNZ2 157 173 NSFL1C NSFL1 cofactor p47 yes no 3 3.1439E-08 75.463 By MS/MS By MS/MS 2 2 0.83788 0.86621 22.888 4 Median 0.83788 0.86621 2.8928 2 1 Median 0.96845 0.89588 39.394 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18482000 9781100 8701400 13867000 7503200 6363800 4615400 2277900 2337500 0 0 0 0 0 0 0 0 0 0 0 0 19870 4353 20716 103927;103928;103929;103930 105546;105547;105548 105546 3 LGAAQSPFNDLNR PPGGPGPRQQQAGARLGAAQSPFNDLNRQL ARLGAAQSPFNDLNRQLVNMGFPQWHLGNH R L G N R Q 2 1 2 1 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 13 0 1401.7001 Q96D05 Q96D05 57 69 C10orf35 Uncharacterized protein C10orf35 yes yes 2 4.8978E-05 88.681 By MS/MS By MS/MS By MS/MS 1 1 1 1.0085 0.97923 13.643 3 Plateau 1.0085 0.97923 NaN 1 0 Median 1.1112 0.94457 NaN 1 0 Median 0.7508 0.76091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30041000 14602000 15440000 15833000 7841600 7991400 10356000 4762500 5593200 3852600 1997400 1855200 0 0 0 0 0 0 0 0 0 19871 3624 20717 103931;103932;103933 105549;105550;105551 105551 3 LGAASLGAEDPETQVVLINAVK QSSVATITRLADVVKLGAASLGAEDPETQV AEDPETQVVLINAVKDVAKALGDLISATKA K L G V K D 4 0 1 1 0 1 2 2 0 1 3 1 0 0 1 1 1 0 0 3 0 0 22 0 2194.1845 Q9Y490 Q9Y490 2064 2085 TLN1 Talin-1 yes yes 2;3 8.2266E-09 54.343 By MS/MS By matching By MS/MS By matching By matching 2 3 2 1 1 1.0657 0.95765 18.388 9 Median 0.75415 0.72906 0.65152 2 0 Median 1.1153 0.96762 5.8721 3 0 Median 1.086 1.2078 0.36351 2 0 Median 1.0657 0.95765 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98663 0.85425 NaN 1 0 Median 24685000 12813000 11872000 18596000 10017000 8579000 1574100 810770 763340 4116100 1789500 2326600 260090 125260 134820 0 0 0 138640 70457 68180 19872 4441 20718 103934;103935;103936;103937;103938;103939;103940;103941;103942 105552;105553;105554;105555;105556;105557;105558 105553 7 LGADAVGMSTVPEVIVAR GPSFETVAECRVLQKLGADAVGMSTVPEVI DAVGMSTVPEVIVARHCGLRVFGFSLITNK K L G A R H 3 1 0 1 0 0 1 2 0 1 1 0 1 0 1 1 1 0 0 4 0 0 18 0 1783.9502 P00491 P00491 212 229 PNP Purine nucleoside phosphorylase yes yes 2 4.812E-11 102.66 By MS/MS By matching By matching By matching 3 3 1 2 1.0113 0.91059 22.581 9 Median 0.97329 0.91059 20.692 3 0 Median 1.1538 0.98627 8.5639 3 0 Median NaN NaN NaN 0 0 Median 1.0113 0.85022 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71688 0.62487 0.49123 2 0 Median 58035000 29466000 28570000 52460000 26867000 25593000 4450100 2031400 2418700 0 0 0 347880 166000 181880 0 0 0 777080 400720 376360 19873 1821 20719;20720 103943;103944;103945;103946;103947;103948;103949;103950;103951 105559;105560;105561 105561 588 3 LGADESEEEGR QPNGQDLGENSRVARLGADESEEEGRRGSL RVARLGADESEEEGRRGSLSNAGDPEIVKS R L G G R R 1 1 0 1 0 0 4 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1190.5051 O43847;F5H7V1 O43847 81 91 NRD1 Nardilysin yes no 2 8.9242E-10 174.41 By matching By MS/MS 1 1 1.1233 1.0241 21.404 2 Median 1.1971 1.1914 NaN 1 0 Median 1.0541 0.88023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13947000 6290200 7657100 1671000 799480 871530 12276000 5490700 6785600 0 0 0 0 0 0 0 0 0 0 0 0 19874 1597 20721 103952;103953 105562;105563 105563 2 LGADESEEEGRR QPNGQDLGENSRVARLGADESEEEGRRGSL VARLGADESEEEGRRGSLSNAGDPEIVKSP R L G R R G 1 2 0 1 0 0 4 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 1 1346.6062 O43847;F5H7V1 O43847 81 92 NRD1 Nardilysin yes no 3 0.0042522 33.782 By matching By MS/MS By matching 1 1 1 1.2376 1.1932 31.703 3 Median 1.4165 1.5738 NaN 1 0 Median 1.2376 1.1932 NaN 1 0 Median 0.68749 0.83614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2211400 933300 1278100 369810 118870 250940 1776700 787220 989530 64856 27207 37649 0 0 0 0 0 0 0 0 0 19875 1597 20722 103954;103955;103956 105564 105564 1 LGADYGLDAR KKVLDKFYKRKEIQKLGADYGLDARLFHQA KEIQKLGADYGLDARLFHQAFISFRNYIMQ K L G A R L 2 1 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 0 0 0 10 0 1049.5142 Q8IYB8 Q8IYB8 109 118 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.00056235 96.331 By matching By MS/MS By MS/MS 1 1 1 1.2945 1.1154 14.676 3 Median NaN NaN NaN 0 0 Median 1.4945 1.2675 NaN 1 0 Median 0.92742 0.94581 NaN 1 0 Median 1.2945 1.1154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17073000 8209600 8863900 0 0 0 4952400 2358700 2593600 9983700 4930300 5053400 2137300 920490 1216800 0 0 0 0 0 0 19876 3342 20723 103957;103958;103959 105565;105566;105567;105568 105566 4 LGAEEMALATHHPSAFDR SPPPRHHLDPHRIERLGAEEMALATHHPSA EEMALATHHPSAFDRVLRLNPMAMEPPAMD R L G D R V 4 1 0 1 0 0 2 1 2 0 2 0 1 1 1 1 1 0 0 0 0 0 18 0 1951.921 Q9H165;A0A2U3TZJ5;A0A2R8YDW6 Q9H165 282 299 BCL11A B-cell lymphoma/leukemia 11A yes no 3 0.027293 23.329 By MS/MS 1 0.66299 0.7045 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66299 0.7045 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8802800 6675600 2127100 0 0 0 0 0 0 8802800 6675600 2127100 0 0 0 0 0 0 0 0 0 19877 405 20724 103960 105569 105569 1 LGAEVYHTLK MILPVGAESFRDAMRLGAEVYHTLKGVIKD RDAMRLGAEVYHTLKGVIKDKYGKDATNVG R L G L K G 1 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1129.6132 P09104 P09104 184 193 ENO2 Gamma-enolase yes yes 2 0.0013506 66.299 By MS/MS By MS/MS 1 1 1.2591 1.1391 5.1622 2 Median 1.1559 1.0982 NaN 1 0 Median 1.3715 1.1814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5688700 2537800 3150900 3887000 1799000 2088000 1801700 738850 1062800 0 0 0 0 0 0 0 0 0 0 0 0 19878 1911 20725 103961;103962 105570;105571 105571 2 LGAFFLER SHEKLPVRTETAMPRLGAFFLERSAGAETD TETAMPRLGAFFLERSAGAETDNAVPQGSK R L G E R S 1 1 0 0 0 0 1 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 8 0 951.5178 Q9BRX5 Q9BRX5 43 50 GINS3 DNA replication complex GINS protein PSF3 yes yes 2 0.0082924 63.48 By MS/MS By matching By matching By matching 1 1 1 1 1.1927 1.0919 14.119 4 Median 1.1271 1.0673 NaN 1 0 Median 1.307 1.117 NaN 1 0 Median 1.2621 1.1788 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87185 0.85472 NaN 1 0 Median NaN NaN NaN 0 0 Median 11469000 5256700 6212400 8220000 3688500 4531600 606990 296750 310240 934360 379040 555320 0 0 0 1707800 892490 815310 0 0 0 19879 3806 20726 103963;103964;103965;103966 105572 105572 1 LGAFQAQEK GAVYSHRPNQHNTVKLGAFQAQEKELVFDI QHNTVKLGAFQAQEKELVFDIDMTDYDDVR K L G E K E 2 0 0 0 0 2 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 9 0 990.51345 P49642;F8VSB2;F8VNY2 P49642 96 104 PRIM1 DNA primase small subunit;DNA primase yes no 2 0.0075799 51.066 By matching By matching By MS/MS 1 1 1 1.2637 1.1941 13.663 3 Median NaN NaN NaN 0 0 Median 1.2637 1.0846 NaN 1 0 Median 1.1604 1.1941 NaN 1 0 Median 1.5929 1.4202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5107100 2264200 2843000 0 0 0 2228300 1060800 1167500 1170200 493050 677200 1708600 710350 998230 0 0 0 0 0 0 19880 2388 20727 103967;103968;103969 105573 105573 1 LGAGEGGEASVSPEK DQPAARTPRSKKKKKLGAGEGGEASVSPEK LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K L G E K T 2 0 0 0 0 0 3 4 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1386.6627 E7ETY2;A0A3B3IS06;Q13428 Q13428 1367 1381 TCOF1 Treacle protein no no 2 0.0014826 39.148 By matching By MS/MS 1 2 0.82565 0.74882 34.354 3 Median NaN NaN NaN 0 0 Median 0.70132 0.61118 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.065 0.94572 33.014 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3542400 1794200 1748300 0 0 0 1048500 585050 463450 0 0 0 2493900 1209100 1284800 0 0 0 0 0 0 19881 2816;891 20728 103970;103971;103972 105574;105575;105576 105576 3 LGAGPDGVEEIKR QSLLRMLFKRNPANRLGAGPDGVEEIKRHS NRLGAGPDGVEEIKRHSFFSTIDWNKLYRR R L G K R H 1 1 0 1 0 0 2 3 0 1 1 1 0 0 1 0 0 0 0 1 0 0 13 1 1339.7096 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 282 294 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2;3 0.00015174 68.809 By MS/MS By MS/MS 2 3 0.97926 0.88049 10.201 5 Median 0.8245 0.84217 6.294 2 1 Median 0.99766 0.91173 11.917 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16331000 8571200 7760000 8518500 5090200 3428300 7812700 3481000 4331700 0 0 0 0 0 0 0 0 0 0 0 0 19882 581 20729 103973;103974;103975;103976;103977 105577;105578;105579 105579 3 LGAGPGDAGEVQAHPFFR RDLLKKLLKRNAASRLGAGPGDAGEVQAHP GPGDAGEVQAHPFFRHINWEELLARKVEPP R L G F R H 3 1 0 1 0 1 1 4 1 0 1 0 0 2 2 0 0 0 0 1 0 0 18 0 1824.8907 P23443 P23443 336 353 RPS6KB1 Ribosomal protein S6 kinase beta-1 yes yes 3 2.04E-06 58.671 By MS/MS 1 0.86652 0.82964 NaN 1 Median 0.86652 0.82964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8301700 4197900 4103800 8301700 4197900 4103800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19883 2113 20730 103978 105580 105580 1 LGALALPR LEEEAAARGRLERTRLGALALPRGDRPGRA GRLERTRLGALALPRGDRPGRAPPAASARP R L G P R G 2 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 809.51232 Q6SPF0;E9PIW9 Q6SPF0 292 299 SAMD1 Atherin yes no 2 0.0029333 103.29 By MS/MS By matching 1 1 1.1549 1.0959 21.021 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89737 0.94457 NaN 1 0 Median 1.4863 1.2716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4484000 2412700 2071300 0 0 0 0 0 0 4204300 2308000 1896300 279720 104670 175060 0 0 0 0 0 0 19884 3182 20731 103979;103980 105581;105582 105581 2 LGALTAEEIALK VASIKEKVKKAKNKKLGALTAEEIALKMEA NKKLGALTAEEIALKMEADEKKKKKKK___ K L G L K M 3 0 0 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1227.7075 Q13601 Q13601 358 369 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.00060982 68.893 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.91765 0.8304 11.14 5 Median 0.81103 0.7968 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86149 0.8304 NaN 1 1 Median 0.93151 0.8314 NaN 1 0 Median 1.0799 1.0305 NaN 1 0 Median 0.91765 0.78016 NaN 1 0 Median 29382000 14722000 14660000 1174000 523430 650540 0 0 0 14875000 7602800 7272200 2585700 1392700 1193000 9958100 4831000 5127100 789200 371560 417640 19885 2830 20732 103981;103982;103983;103984;103985 105583;105584;105585 105585 3 LGAMDIDTHKK SKRKSGGNEVSIEERLGAMDIDTHKKGKED IEERLGAMDIDTHKKGKEDLQTNSFPVLLT R L G K K G 1 0 0 2 0 0 0 1 1 1 1 2 1 0 0 0 1 0 0 0 0 0 11 1 1227.6282 Q15061 Q15061 442 452 WDR43 WD repeat-containing protein 43 yes yes 3 0.0056555 33.761 By matching By MS/MS By matching 1 2 2 1.219 1.2449 17.92 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0238 1.0908 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2489 1.3508 1.569 2 0 Median 1.2186 1.0494 24.158 2 0 Median 7057700 3339400 3718300 0 0 0 0 0 0 684240 269090 415160 0 0 0 5684700 2772200 2912500 688770 298140 390640 19886 2924 20733 103986;103987;103988;103989;103990 105586;105587 105587 2 LGAMSAAPSQPNSQIR PVVPSVPMASPAPGRLGAMSAAPSQPNSQI GAMSAAPSQPNSQIRQNIRRSLKEILWKRV R L G I R Q 3 1 1 0 0 2 0 1 0 1 1 0 1 0 2 3 0 0 0 0 0 0 16 0 1626.8148 Q9BTC0 Q9BTC0 656 671 DIDO1 Death-inducer obliterator 1 yes yes 2 1.7556E-08 134.13 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 2 1 0.69975 0.67246 34.93 10 Median 1.3059 1.2345 NaN 1 0 Median 1.0953 0.92477 27.869 2 1 Median 0.5762 0.63382 4.4161 4 1 Median 1.1896 1.0486 62.232 2 0 Median 0.63786 0.66963 NaN 1 0 Median NaN NaN NaN 0 0 Median 76645000 44580000 32065000 4745500 2119200 2626300 6016200 3203200 2813000 57121000 34636000 22485000 4845000 2559500 2285600 3916700 2061700 1855000 0 0 0 19887 3824 20734;20735 103991;103992;103993;103994;103995;103996;103997;103998;103999;104000 105588;105589;105590;105591;105592;105593;105594;105595;105596;105597 105590 1833 10 LGANSLLDLVVFGR ACGEAACASVHGANRLGANSLLDLVVFGRA RLGANSLLDLVVFGRACALSIEESCRPGDK R L G G R A 1 1 1 1 0 0 0 2 0 0 4 0 0 1 0 1 0 0 0 2 0 0 14 0 1472.8351 P31040;D6RFM5;A0A087X1I3;H0Y8X1 P31040 452 465 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 3.8342E-05 85.377 By MS/MS By MS/MS By matching 3 4 1 1.3868 1.2288 21.73 8 Median 1.1602 1.1416 3.6355 3 0 Median 1.4936 1.2967 10.109 4 0 Median NaN NaN NaN 0 0 Median 2.4409 2.1337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37165000 17181000 19983000 19890000 9120500 10769000 17213000 8045100 9168300 0 0 0 61143 15823 45320 0 0 0 0 0 0 19888 2200 20736 104001;104002;104003;104004;104005;104006;104007;104008 105598;105599;105600;105601 105600 4 LGAPALTSR TCPGDRSAITPGGLRLGAPALTSRQFREDD TPGGLRLGAPALTSRQFREDDFRRVVDFID R L G S R Q 2 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 9 0 884.50797 P34897;H0YIZ0 P34897 426 434 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.00029983 137.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 1.1493 0.92957 16.521 9 Median 0.92812 0.88044 NaN 1 0 Median 1.1741 0.96772 5.6881 2 0 Median 0.79499 0.81214 6.9289 2 0 Median 1.2713 1.0864 21.082 3 0 Median NaN NaN NaN 0 0 Median 1.2896 1.1095 NaN 1 0 Median 83613000 39956000 43657000 17228000 9649900 7578000 19885000 9018400 10867000 9844100 5519400 4324600 32271000 13830000 18441000 0 0 0 4385200 1938100 2447100 19889 2228 20737 104009;104010;104011;104012;104013;104014;104015;104016;104017 105602;105603;105604;105605;105606;105607;105608;105609;105610 105606 9 LGAPQTHLGLK DGFIDLMELKLMMEKLGAPQTHLGLKNMIK MMEKLGAPQTHLGLKNMIKEVDEDFDSKLS K L G L K N 1 0 0 0 0 1 0 2 1 0 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1133.6557 Q96C19;H0Y4Y4;C9JTV4;Q8WYH2;A0A087X1Z2;Q9BUP0 Q96C19 124 134 EFHD2;EFHD1;PP1187 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 2 0.00019133 101.65 By MS/MS By MS/MS By matching 1 1 1 1.302 1.0943 23.729 3 Median 0.93575 0.84925 NaN 1 1 Median 1.302 1.0943 NaN 1 0 Median 1.4111 1.3645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37849000 18201000 19648000 28788000 14660000 14128000 7459000 2775800 4683200 1602300 765080 837230 0 0 0 0 0 0 0 0 0 19890 3613 20738 104018;104019;104020 105611;105612 105612 2 LGAQALLGAAK DGGVKMGLPRRLAVRLGAQALLGAAKMLLH LAVRLGAQALLGAAKMLLHSEQHPGQLKDN R L G A K M 4 0 0 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1011.6077 P32322;J3KQ22;J3QKT4;J3QL24 P32322 205 215 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 2 0.00017819 93.162 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.5612 1.4018 29.249 4 Median 0.93321 0.84607 NaN 1 0 Median 1.7308 1.4509 NaN 1 0 Median 1.4081 1.3544 NaN 1 0 Median 1.9705 1.6566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59442000 28215000 31227000 41495000 21642000 19853000 4367400 1470200 2897300 8409000 3480300 4928800 5170700 1622600 3548100 0 0 0 0 0 0 19891 2218 20739 104021;104022;104023;104024 105613;105614;105615;105616;105617;105618;105619 105614 7 LGAQLADLHLDNKK MEHMDMRHLSSHAAKLGAQLADLHLDNKKL KLGAQLADLHLDNKKLGEMRLKEAGTVGRG K L G K K L 2 0 1 2 0 1 0 1 1 0 4 2 0 0 0 0 0 0 0 0 0 0 14 1 1534.8467 Q9HA64;I3L2G3;I3L139 Q9HA64 103 116 FN3KRP Ketosamine-3-kinase yes no 3 0.00016112 64.104 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.96454 0.94125 9.2895 4 Median 0.94474 0.917 NaN 1 0 Median 0.98475 0.88685 NaN 1 0 Median 0.92351 0.96614 NaN 1 0 Median 1.248 1.0958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32578000 15862000 16716000 16285000 7926700 8358400 7411800 3465300 3946500 6381900 3402800 2979100 2499700 1067500 1432200 0 0 0 0 0 0 19892 4005 20740 104025;104026;104027;104028 105620;105621;105622;105623;105624;105625;105626 105624 7 LGASALDSIQEFR IGPTLLLNSDIIRARLGASALDSIQEFRLS ARLGASALDSIQEFRLSGWLAQQEDAHRIV R L G F R L 2 1 0 1 0 1 1 1 0 1 2 0 0 1 0 2 0 0 0 0 0 0 13 0 1405.7201 A0A384DVU0;Q8IY17 A0A384DVU0 815 827 PNPLA6 Neuropathy target esterase yes no 2 5.5866E-05 87.298 By MS/MS By matching 1 1 0.9454 0.88258 24.884 2 Median 0.74615 0.74018 NaN 1 0 Median 1.1979 1.0524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3623600 1962000 1661600 2587600 1503200 1084400 1036000 458780 577220 0 0 0 0 0 0 0 0 0 0 0 0 19893 410 20741 104029;104030 105627 105627 1 LGASLAFNNIYR KRLYSLALHPNAFKRLGASLAFNNIYREFR FKRLGASLAFNNIYREFREEESLVEQFVFE R L G Y R E 2 1 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 12 0 1337.7092 P78527 P78527 1076 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.8139E-23 204.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 2 2 1.204 1.0632 11.805 15 Median 1.0605 1.0062 5.2764 2 0 Median 1.4159 1.1311 8.2466 3 2 Median 0.95745 0.99154 4.2338 3 0 Median 1.4877 1.3003 1.6367 3 0 Median 0.99767 1.0341 3.921 2 1 Median 1.353 1.1153 14.757 2 0 Median 438250000 208150000 230100000 163860000 79936000 83922000 94525000 39510000 55014000 152250000 76249000 76001000 4878100 1937500 2940700 19931000 9289500 10641000 2809900 1230300 1579500 19894 2647 20742 104031;104032;104033;104034;104035;104036;104037;104038;104039;104040;104041;104042;104043;104044;104045 105628;105629;105630;105631;105632;105633;105634;105635;105636;105637;105638;105639;105640;105641;105642;105643;105644;105645 105628 18 LGATIDVEHSHVR RSIIFANYIARDTRRLGATIDVEHSHVRFL RRLGATIDVEHSHVRFLGNLVLNLWDCGGQ R L G V R F 1 1 0 1 0 0 1 1 2 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1432.7423 Q7L523;Q5VZM0 Q7L523 39 51 RRAGA;RRAGB Ras-related GTP-binding protein A yes no 3 2.5609E-07 100.02 By MS/MS By MS/MS 1 2 1.5899 1.3327 31.574 3 Plateau 1.2977 1.2366 NaN 1 0 Median 1.1616 0.99698 41.044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14550000 5406400 9143500 4055200 1528600 2526600 10495000 3877800 6616900 0 0 0 0 0 0 0 0 0 0 0 0 19895 3223 20743 104046;104047;104048 105646;105647;105648 105648 3 LGAVDESLSEETQK EEANNLIEECEQAERLGAVDESLSEETQKA RLGAVDESLSEETQKAVLQWTKHDDSSDNF R L G Q K A 1 0 0 1 0 1 3 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 14 0 1504.7257 Q96HE7;G3V3E6;G3V5B3 Q96HE7 137 150 ERO1L ERO1-like protein alpha yes no 2 1.2385E-05 100.72 By MS/MS By MS/MS 3 2 1.0009 0.93057 9.9309 5 Median 0.97773 0.91561 11.412 3 1 Median 1.1237 0.9614 4.609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28846000 14565000 14281000 17438000 9656500 7781400 11408000 4908600 6499200 0 0 0 0 0 0 0 0 0 0 0 0 19896 3666 20744 104049;104050;104051;104052;104053 105649;105650;105651 105651 3 LGAVFNQVAFPLQYTPR VAISTNTLRILALEKLGAVFNQVAFPLQYT AVFNQVAFPLQYTPRKFVIHPESNNLIIIE K L G P R K 2 1 1 0 0 2 0 1 0 0 2 0 0 2 2 0 1 0 1 2 0 0 17 0 1920.0258 Q15393 Q15393 770 786 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 1.1353E-10 106.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 5 2 0.76672 0.79813 35.309 19 Median 0.68482 0.67161 15.916 5 0 Median 0.73758 0.64827 80.41 3 0 Median 0.74751 0.81859 4.894 4 0 Median 0.93812 0.81621 11.789 5 0 Median 0.78481 0.82985 12.041 2 0 Median NaN NaN NaN 0 0 Median 61698000 34868000 26830000 30293000 17413000 12880000 4014300 2464300 1550100 19220000 10668000 8551500 3968200 1948500 2019800 4202900 2374500 1828400 0 0 0 19897 2946 20745 104054;104055;104056;104057;104058;104059;104060;104061;104062;104063;104064;104065;104066;104067;104068;104069;104070;104071;104072 105652;105653;105654;105655;105656;105657;105658;105659;105660;105661;105662;105663;105664;105665;105666;105667;105668;105669;105670;105671;105672 105659 21 LGAVGGSGFK VYKCGDCPSADPTVKLGAVGGSGFKVCLRT DPTVKLGAVGGSGFKVCLRTPHLEKRYKIQ K L G F K V 1 0 0 0 0 0 0 4 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 0 891.48142 O95163;F5H2T0 O95163 465 474 IKBKAP Elongator complex protein 1 yes no 2 0.00033827 85.676 By MS/MS 1 1.2734 1.1018 NaN 1 Median NaN NaN NaN 0 0 Median 1.2734 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430100 1522700 1907400 0 0 0 3430100 1522700 1907400 0 0 0 0 0 0 0 0 0 0 0 0 19898 1749 20746 104073 105673;105674 105673 2 LGAVPATSGPTTFK ______________________________ RLGAVPATSGPTTFKQQRSTRIVGAKNRTQ R L G F K Q 2 0 0 0 0 0 0 2 0 0 1 1 0 1 2 1 3 0 0 1 0 0 14 0 1345.7242 G3XAG1;Q96ME7 G3XAG1 5 18 ZNF512 Zinc finger protein 512 yes no 2 2.5489E-05 85.958 By MS/MS By MS/MS 1 3 0.58425 0.59103 21.265 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.063 0.86753 NaN 1 0 Median 0.57588 0.55756 7.2375 3 0 Median NaN NaN NaN 0 0 Median 14782000 8319000 6462600 0 0 0 0 0 0 0 0 0 892880 392200 500680 13889000 7926800 5961900 0 0 0 19899 1124 20747 104074;104075;104076;104077 105675;105676;105677 105675 3 LGAVYDVSHYNALLK ERTEFAHRIWDTLQKLGAVYDVSHYNALLK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL K L G L K V 2 0 1 1 0 0 0 1 1 0 3 1 0 0 0 1 0 0 2 2 0 0 15 0 1661.8777 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 156 170 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 7.0744E-10 111.63 By MS/MS By matching By MS/MS By matching 3 2 1 1 1.2341 1.2415 32.004 7 Median 1.1268 1.0844 26.31 3 0 Median 1.5618 1.3445 11.274 2 0 Median 1.2147 1.3077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9812 2.1001 NaN 1 0 Median NaN NaN NaN 0 0 Median 77054000 34146000 42908000 52115000 24017000 28098000 16361000 6315700 10046000 6595500 3257100 3338400 0 0 0 1981500 555910 1425600 0 0 0 19900 2315 20748 104078;104079;104080;104081;104082;104083;104084 105678;105679;105680;105681;105682;105683 105680 6 LGAYYVTGK KFNCEENQHSDSCYKLGAYYVTGKGGLTQD SDSCYKLGAYYVTGKGGLTQDLKAAARCFL K L G G K G 1 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 2 1 0 0 9 0 970.51238 Q96BR5 Q96BR5 74 82 COA7 Cytochrome c oxidase assembly factor 7 yes yes 2 0.018899 40.352 By MS/MS 1 0.64526 0.59928 NaN 1 Median 0.64526 0.59928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5485100 3523400 1961700 5485100 3523400 1961700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19901 3610 20749 104085 105684;105685 105685 2 LGDASIAAPFTSK QVLRDLEDESTPIVKLGDASIAAPFTSKLS VKLGDASIAAPFTSKLSSIQCICHVIKQGR K L G S K L 3 0 0 1 0 0 0 1 0 1 1 1 0 1 1 2 1 0 0 0 0 0 13 0 1276.6663 Q9HD20 Q9HD20 951 963 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 2 0.004637 39.917 By MS/MS By MS/MS 1 1 1.0803 1.0468 3.2696 2 Median NaN NaN NaN 0 0 Median 1.2293 1.0713 NaN 1 0 Median 0.94929 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7839000 3327800 4511100 0 0 0 3339900 1279500 2060400 4499100 2048300 2450700 0 0 0 0 0 0 0 0 0 19902 4034 20750 104086;104087 105686;105687 105687 2 LGDAVEQGVINNTVLGYFIGR SAKAQVSGQSARKMRLGDAVEQGVINNTVL QGVINNTVLGYFIGRIYLYLTKVGISPDKL R L G G R I 1 1 2 1 0 1 1 4 0 2 2 0 0 1 0 0 1 0 1 3 0 0 21 0 2234.1695 P41250 P41250 392 412 GARS Glycine--tRNA ligase yes yes 2;3 0.0020466 45.115 By MS/MS 3 1.1402 1.1098 3.7689 3 Median 1.1402 1.1098 3.7689 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3572700 1594700 1978000 3572700 1594700 1978000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19903 2301 20751 104088;104089;104090 105688;105689;105690 105690 3 LGDAVIWGTGQLFQAQQDLLHR LICRDLLILQQLLMRLGDAVIWGTGQLFQA GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS R L G H R T 2 1 0 2 0 4 0 3 1 1 4 0 0 1 0 0 1 1 0 1 0 0 22 0 2465.2815 Q12769;G3V198;E9PR16 Q12769 744 765 NUP160 Nuclear pore complex protein Nup160 yes no 3 0.0089124 20.625 By MS/MS 1 1.0573 1.1611 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0573 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3128100 1574900 1553200 0 0 0 0 0 0 3128100 1574900 1553200 0 0 0 0 0 0 0 0 0 19904 2756 20752 104091 105691 105691 1 LGDAWDLMKVHALMK L G M K 2 0 0 2 0 0 0 1 1 0 3 2 2 0 0 0 0 1 0 1 0 0 15 1 1726.8899 REV__A0A0C4DFY3 yes no 3 0.0083374 36.022 By MS/MS 1 4.5889 4.3797 NaN 1 Median NaN NaN NaN 0 0 Median 4.5889 4.3797 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9939500 1698500 8241000 0 0 0 9939500 1698500 8241000 0 0 0 0 0 0 0 0 0 0 0 0 + 19905 4508 20753 104092 105692 105692 1 LGDDIDLIVR KNEIASVAYRYRRWKLGDDIDLIVRCEHDG YRRWKLGDDIDLIVRCEHDGVMTGANGEVS K L G V R C 0 1 0 3 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1127.6186 O15371 O15371 365 374 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2 0.0013506 66.299 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1889 1.0987 3.5795 4 Median 1.1653 1.1191 NaN 1 0 Median 1.2131 1.0483 NaN 1 0 Median 1.0866 1.1342 NaN 1 0 Median 1.2665 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31816000 13820000 17996000 7193900 3289700 3904100 20928000 8697000 12231000 3356800 1700800 1656000 337540 132020 205520 0 0 0 0 0 0 19906 1540 20754 104093;104094;104095;104096 105693;105694;105695 105695 3 LGDEDEEIDGDTNK YIVPDKQIFRKPQQKLGDEDEEIDGDTNKY KLGDEDEEIDGDTNKYKKGRKKAAYAGGLV K L G N K Y 0 0 1 4 0 0 3 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 14 0 1548.6427 A0A087WU64;A6NMQ1;P09884 A0A087WU64 815 828 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 1.0423E-05 90.146 By MS/MS 1 1.0976 0.97395 NaN 1 Median NaN NaN NaN 0 0 Median 1.0976 0.97395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2648000 1071600 1576400 0 0 0 2648000 1071600 1576400 0 0 0 0 0 0 0 0 0 0 0 0 19907 26 20755 104097 105696;105697 105697 2 LGDFFGDPGNPPEFNPSGSK HIQESRFLYPGKNGRLGDFFGDPGNPPEFN GDPGNPPEFNPSGSKDGKYELLTSANEVIV R L G S K D 0 0 2 2 0 0 1 4 0 0 1 1 0 3 4 2 0 0 0 0 0 0 20 0 2077.9381 F5H6X0;F5GXG6;F5GX35;F5H4K7;F5GWD3;Q13889 F5H6X0 37 56 GTF2H3 General transcription factor IIH subunit 3 yes no 2 0.043852 19.839 By MS/MS By matching 1 1 0.6769 0.61086 41.394 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47253 0.45585 NaN 1 0 Median 0.96966 0.81858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1932200 1239900 692350 0 0 0 0 0 0 1743500 1117400 626060 188730 122440 66288 0 0 0 0 0 0 19908 996 20756 104098;104099 105698;105699 105698 2 LGDFPYVSILDPR YHDSEEGQRYIQFYKLGDFPYVSILDPRTG YKLGDFPYVSILDPRTGQKLVEWHQLDVSS K L G P R T 0 1 0 2 0 0 0 1 0 1 2 0 0 1 2 1 0 0 1 1 0 0 13 0 1490.7769 O94888;C9JAT7 O94888 222 234 UBXN7 UBX domain-containing protein 7 yes no 2 0.025504 28.013 By MS/MS By matching 1 1 0.86791 0.81312 2.1137 2 Median 0.81533 0.82537 NaN 1 0 Median 0.92388 0.80106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4498000 2295500 2202600 1826400 1015400 810970 2671600 1280000 1391600 0 0 0 0 0 0 0 0 0 0 0 0 19909 1733 20757 104100;104101 105700 105700 1 LGDHQSPATPAFK YSAFLPDGCDHLRDKLGDHQSPATPAFKSL DKLGDHQSPATPAFKSLEAFFLYGRLYEFW K L G F K S 2 0 0 1 0 1 0 1 1 0 1 1 0 1 2 1 1 0 0 0 0 0 13 0 1367.6834 Q8TEQ6 Q8TEQ6 1262 1274 GEMIN5 Gem-associated protein 5 yes yes 3 0.0065726 44.511 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0152 0.91789 55.501 5 Median 1.0152 0.95325 NaN 1 0 Median 1.0153 0.89711 3.2389 2 2 Median 2.563 3.0098 NaN 1 0 Median 0.85974 0.78153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7365500 3821600 3543900 1572200 841300 730880 4064500 2090700 1973800 948300 503210 445090 780480 386310 394170 0 0 0 0 0 0 19910 3478 20758 104102;104103;104104;104105;104106 105701;105702;105703;105704 105704 4 LGDLGAIDEK IQEKKSGRIPGIYGRLGDLGAIDEKYDVAI GIYGRLGDLGAIDEKYDVAISSCCHALDYI R L G E K Y 1 0 0 2 0 0 1 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1029.5342 Q9NTJ3;E9PD53 Q9NTJ3 619 628 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00036109 94.692 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.93869 0.81202 30.27 5 Median NaN NaN NaN 0 0 Median 1.0592 0.92792 18.869 2 0 Median 0.46621 0.50364 NaN 1 1 Median 1.0849 0.97711 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76493 0.65842 NaN 1 0 Median 20054000 10273000 9780800 0 0 0 7705000 3464200 4240800 5767600 3842500 1925100 6012900 2672400 3340500 0 0 0 568780 294370 274410 19911 4108 20759 104107;104108;104109;104110;104111 105705;105706;105707;105708;105709 105708 5 LGDLVWGK ______________________________ MAAVSLRLGDLVWGKLGRYPPWPGKIVNPP R L G G K L 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 8 0 886.49125 Q49A26;K7EQB2;K7ELL0 Q49A26 8 15 GLYR1 Putative oxidoreductase GLYR1 yes no 2 0.02179 45.394 By matching By MS/MS By matching By matching By matching 1 1 1 2 1 0.86796 0.87418 26.654 6 Median NaN NaN NaN 0 0 Median 1.6492 1.4616 NaN 1 0 Median 0.82405 0.84756 NaN 1 0 Median 0.77344 0.67881 NaN 1 0 Median 0.84741 0.82181 13.108 2 0 Median 1.1169 0.95337 NaN 1 0 Median 8246300 4425300 3821100 0 0 0 217490 75357 142140 2805000 1501200 1303800 105920 52230 53689 4784300 2634200 2150100 333560 162240 171320 19912 3018 20760 104112;104113;104114;104115;104116;104117 105710 105710 1 LGDLYEEEMR LLAELEQLKGQGKSRLGDLYEEEMRELRRQ QGKSRLGDLYEEEMRELRRQVDQLTNDKAR R L G M R E 0 1 0 1 0 0 3 1 0 0 2 0 1 0 0 0 0 0 1 0 0 0 10 0 1253.5598 P08670;B0YJC4 P08670 146 155 VIM Vimentin yes no 2 6.08E-07 157.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 5 2 5 1.0406 0.93689 22.994 19 Median 0.82672 0.8003 14.127 2 0 Median 1.3852 1.1932 19.73 3 0 Median 1.0738 1.0778 9.3109 3 0 Median 1.1592 1.0002 22.986 4 2 Median 1.1272 1.1308 0.60701 2 0 Median 0.94271 0.84533 7.4389 5 0 Linear 470560000 216740000 253820000 35585000 17441000 18144000 51378000 20260000 31118000 117620000 55015000 62602000 67405000 30426000 36979000 126030000 56894000 69140000 72544000 36705000 35839000 19913 1907 20761;20762 104118;104119;104120;104121;104122;104123;104124;104125;104126;104127;104128;104129;104130;104131;104132;104133;104134;104135;104136;104137 105711;105712;105713;105714;105715;105716;105717;105718;105719;105720;105721;105722;105723;105724;105725;105726;105727;105728;105729;105730;105731;105732;105733;105734 105720 680 24 LGDLYEEEMRELR LLAELEQLKGQGKSRLGDLYEEEMRELRRQ SRLGDLYEEEMRELRRQVDQLTNDKARVEV R L G L R R 0 2 0 1 0 0 4 1 0 0 3 0 1 0 0 0 0 0 1 0 0 0 13 1 1651.7876 P08670;B0YJC4 P08670 146 158 VIM Vimentin yes no 3 0.056533 14.687 By MS/MS 1 0.82726 0.88654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82726 0.88654 NaN 1 0 Median NaN NaN NaN 0 0 Median 3267100 1639100 1628000 0 0 0 0 0 0 0 0 0 0 0 0 3267100 1639100 1628000 0 0 0 19914 1907 20763 104138 105735 105735 1 LGDPLEAFPVFK AAMDAVCAKVDAANRLGDPLEAFPVFKKYD ANRLGDPLEAFPVFKKYDRNGTQMKKVMLT R L G F K K 1 0 0 1 0 0 1 1 0 0 2 1 0 2 2 0 0 0 0 1 0 0 12 0 1331.7125 F5H2C9;Q86UY6 F5H2C9 35 46 NAA40 N-alpha-acetyltransferase 40 yes no 2 0.00074852 61.353 By MS/MS By matching 1 1 0.81518 0.75485 2.0403 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72978 0.74404 NaN 1 0 Median 0.91059 0.76582 NaN 1 0 Median 14666000 8143200 6522500 0 0 0 0 0 0 0 0 0 0 0 0 13653000 7656100 5996400 1013200 487100 526060 19915 1027 20764 104139;104140 105736 105736 1 LGDQGPPEEAEDR DKWDELKEAGVSDMKLGDQGPPEEAEDRFS MKLGDQGPPEEAEDRFSMPLIITIVCMASF K L G D R F 1 1 0 2 0 1 3 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 13 0 1411.6216 O00592 O00592 445 457 PODXL Podocalyxin yes yes 2 0.0015521 51.927 By MS/MS By MS/MS 1 1 0.80978 0.75628 18.55 2 Median 0.66194 0.66331 NaN 1 0 Median 0.99064 0.86227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1633300 887670 745600 1007600 571490 436100 625680 316180 309500 0 0 0 0 0 0 0 0 0 0 0 0 19916 1473 20765 104141;104142 105737;105738;105739 105738 3 LGDSHDLQR AWSSLGKRADQRKAKLGDSHDLQRFLSDFR DQRKAKLGDSHDLQRFLSDFRDLMSWINGI K L G Q R F 0 1 0 2 0 1 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1039.5047 A0A0D9SF54;Q13813 Q13813 1335 1343 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.010372 48.283 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 0.99963 0.93245 12.103 6 Median NaN NaN NaN 0 0 Median 1.1088 0.9721 9.8708 2 0 Median 0.86321 0.95908 NaN 1 0 Median 0.94591 0.82004 NaN 1 0 Median 1.0342 1.0608 NaN 1 0 Median 0.96619 0.7923 NaN 1 0 Median 3292800 1712700 1580100 0 0 0 964300 547740 416560 1366500 694170 672350 92886 49160 43726 672390 329320 343060 196660 92286 104370 19917 264;2838 20766 104143;104144;104145;104146;104147;104148 105740;105741 105740 2 LGDSQLVK CLTYLDNGVVFVGSRLGDSQLVKLNVDSNE VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM R L G V K L 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 Q16531;F5GY55 Q16531 328 335 DDB1 DNA damage-binding protein 1 yes no 2 0.004801 79.469 By matching By MS/MS By MS/MS By matching 1 3 2 1 1.4155 1.2464 22.62 7 Median 1.8144 1.8391 NaN 1 0 Median 1.4155 1.2464 8.8531 3 0 Median 0.87177 0.96023 4.7497 2 0 Median 1.5394 1.3109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25492000 11243000 14250000 885600 247210 638390 19399000 8433900 10966000 2918600 1605300 1313300 2288800 956290 1332500 0 0 0 0 0 0 19918 2985 20767 104149;104150;104151;104152;104153;104154;104155 105742;105743;105744;105745;105746 105742 5 LGDTQQSIPGNEER ANPWLILSEDRRQVRLGDTQQSIPGNEERF RLGDTQQSIPGNEERFDSYPMVLGAQHFHS R L G E R F 0 1 1 1 0 2 2 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 14 0 1542.7274 P19474;H0YDP8 P19474 311 324 TRIM21 E3 ubiquitin-protein ligase TRIM21 yes no 2 0.054664 23.851 By MS/MS 1 0.71332 0.62205 NaN 1 Median NaN NaN NaN 0 0 Median 0.71332 0.62205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 986440 577920 408520 0 0 0 986440 577920 408520 0 0 0 0 0 0 0 0 0 0 0 0 19919 2066 20768 104156 105747;105748 105748 2 LGDTYPSISNAR KILQKSPLPPGNVKKLGDTYPSISNARNAE VKKLGDTYPSISNARNAELRLRWGQIVLKN K L G A R N 1 1 1 1 0 0 0 1 0 1 1 0 0 0 1 2 1 0 1 0 0 0 12 0 1292.6361 Q9H4A4;A6NKB8 Q9H4A4 556 567 RNPEP Aminopeptidase B yes no 2 0.031351 27.772 By MS/MS By matching By matching 1 1 1 1.219 1.0865 29.601 3 Median NaN NaN NaN 0 0 Median 1.2169 1.0531 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1538 1.7848 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.219 1.0865 NaN 1 0 Median 14299000 5327200 8971400 0 0 0 6856600 3032600 3824000 0 0 0 4357400 868920 3488500 0 0 0 3084700 1425700 1659000 19920 3964 20769 104157;104158;104159 105749 105749 1 LGDVYVNDAFGTAHR AEPAKIEAFRASLSKLGDVYVNDAFGTAHR LGDVYVNDAFGTAHRAHSSMVGVNLPQKAG K L G H R A 2 1 1 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 1 2 0 0 15 0 1633.7849 P00558;P07205 P00558 157 171 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2;3 7.4602E-14 175.54 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 4 3 1.1843 1.1009 14.03 18 Median 1.1596 1.1037 3.3426 6 2 Median 1.2987 1.1042 6.5095 5 0 Median 1.0415 1.0754 26.169 4 0 Median 1.3149 1.1307 14.448 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1923400000 866260000 1057200000 1055700000 487700000 568020000 584930000 244190000 340740000 252780000 120760000 132020000 29984000 13605000 16379000 0 0 0 0 0 0 19921 1824 20770 104160;104161;104162;104163;104164;104165;104166;104167;104168;104169;104170;104171;104172;104173;104174;104175;104176;104177 105750;105751;105752;105753;105754;105755;105756;105757;105758;105759;105760;105761;105762;105763;105764;105765;105766;105767;105768;105769;105770;105771;105772;105773;105774;105775 105757 26 LGDYQTQLEK RSGPVAGIKTWVQTRLGDYQTQLEKLSKEI WVQTRLGDYQTQLEKLSKEIATQKSRLSES R L G E K L 0 0 0 1 0 2 1 1 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1193.5928 P46939 P46939 1099 1108 UTRN Utrophin yes yes 2 0.0039134 71.349 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19922 2349 20771 104178 105776 105776 1 LGEAHAELDSLR RLHETQRENLLLRTRLGEAHAELDSLRHQV RTRLGEAHAELDSLRHQVDQLAEENVELEL R L G L R H 2 1 0 1 0 0 2 1 1 0 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1309.6626 A6NC98 A6NC98 398 409 CCDC88B Coiled-coil domain-containing protein 88B yes yes 2;3 0.061164 24.776 By MS/MS By MS/MS By matching 2 2 1 1.2505 1.202 36.364 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3176 1.384 8.4485 2 0 Median 1.0644 0.89209 42.164 2 0 Median 0.71565 0.71946 NaN 1 0 Median NaN NaN NaN 0 0 Median 10740000 4619300 6120500 0 0 0 0 0 0 7297400 2939800 4357600 1586300 707620 878690 1856100 971870 884210 0 0 0 19923 504 20772 104179;104180;104181;104182;104183 105777;105778 105778 2 LGEALLVR L G V R 1 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 869.53345 REV__H0Y8B3 yes no 2 0.002346 114.19 By MS/MS By MS/MS 2 1 1.2176 1.1425 5.6721 3 Median 1.1873 1.1109 3.9693 2 0 Median NaN NaN NaN 0 0 Median 1.2183 1.2099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127300000 56084000 71216000 105000000 46315000 58685000 0 0 0 22300000 9768700 12531000 0 0 0 0 0 0 0 0 0 + 19924 4522 20773 104184;104185;104186 105779;105780;105781 105780 3 LGEFFQTK DIENEVVQITWNRKKLGEFFQTKYDWDLLA ITWNRKKLGEFFQTKYDWDLLAARSIWAFG K L G T K Y 0 0 0 0 0 1 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 968.49673 Q15029;K7EP67 Q15029 714 721 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0062885 71.877 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 3 1 1.2286 1.0908 14.645 9 Median 1.2286 1.1945 NaN 1 0 Median 1.48 1.2608 NaN 1 0 Median 0.86893 0.94661 11.736 2 1 Median 1.4091 1.2064 NaN 1 0 Median 1.0211 0.97215 19.386 3 1 Median 1.3184 1.0908 NaN 1 0 Median 47807000 21544000 26263000 6617800 2748900 3869000 5547000 2241700 3305200 13646000 7122700 6523800 2886000 1222200 1663700 17755000 7718300 10037000 1354300 489690 864660 19925 2917 20774 104187;104188;104189;104190;104191;104192;104193;104194;104195 105782;105783;105784;105785;105786 105786 5 LGEGGPDSDQAIR KHKVRDLVPSSRVVRLGEGGPDSDQAIRDR VRLGEGGPDSDQAIRDRFSRLRYQSEA___ R L G I R D 1 1 0 2 0 1 1 3 0 1 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1313.6212 H7C2U8;Q9H0X4 H7C2U8 168 180 ITFG3 Protein ITFG3 yes no 2 0.00045482 73.067 By MS/MS 1 0.73875 0.65663 NaN 1 Median NaN NaN NaN 0 0 Median 0.73875 0.65663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1155400 632680 522760 0 0 0 1155400 632680 522760 0 0 0 0 0 0 0 0 0 0 0 0 19926 1263 20775 104196 105787 105787 1 LGEHNIDVLEGNEQFINAAK VVSAAHCYKSRIQVRLGEHNIDVLEGNEQF IDVLEGNEQFINAAKIITHPNFNGNTLDND R L G A K I 2 0 3 1 0 1 3 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2210.0968 CON__P00761 CON__P00761 58 77 yes yes 2;3 2.2013E-59 173.87 By MS/MS By MS/MS 13 3 0.047165 0.046738 144.63 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.046056 0.04422 170.55 8 8 Median NaN NaN NaN 0 0 Median 0.050146 0.05253 52.653 3 3 Median NaN NaN NaN 0 0 Median 353380000 331410000 21965000 0 0 0 0 0 0 326880000 305880000 20996000 0 0 0 26499000 25530000 968790 0 0 0 + 19927 737 20776 104197;104198;104199;104200;104201;104202;104203;104204;104205;104206;104207;104208;104209;104210;104211;104212 105788;105789;105790;105791;105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805;105806 105803 19 LGEILANLSNPQLR QPTASWTAIEHSLLKLGEILANLSNPQLRS KLGEILANLSNPQLRSQAEQCGTLIRSIPT K L G L R S 1 1 2 0 0 1 1 1 0 1 4 0 0 0 1 1 0 0 0 0 0 0 14 0 1536.8624 F5GY88;A0A0B4J1W0;O75448;F5H5K2;B4DDR8;E9PFL1 F5GY88 218 231 MED24 Mediator of RNA polymerase II transcription subunit 24 yes no 2 3.4453E-08 105.86 By MS/MS By MS/MS 2 1 1.0261 0.9246 7.0686 3 Median NaN NaN NaN 0 0 Median 1.0957 0.96712 9.2978 2 2 Median 0.86312 0.9246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6558100 3130800 3427200 0 0 0 2659300 1198700 1460600 3898800 1932200 1966600 0 0 0 0 0 0 0 0 0 19928 212 20777 104213;104214;104215 105807;105808;105809 105807 3 LGEINVIGEPFLNVNCEHIK ENVGIDITEPLYMQRLGEINVIGEPFLNVN VIGEPFLNVNCEHIKSFDKNLYRQLISYPQ R L G I K S 0 0 3 0 1 0 3 2 1 3 2 1 0 1 1 0 0 0 0 2 0 0 20 0 2294.1729 A0A3B3IU45;P33991;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 147 166 MCM4 DNA replication licensing factor MCM4 yes no 3 1.1552E-07 58.158 By MS/MS 2 0.97928 0.85784 8.7418 2 Median NaN NaN NaN 0 0 Median 0.97928 0.85784 8.7418 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5743800 2739400 3004400 0 0 0 5743800 2739400 3004400 0 0 0 0 0 0 0 0 0 0 0 0 19929 441 20778 104216;104217 105810;105811;105812 105811 3 LGEKVEDSTMPIRR ALPLIVGAQLIHADKLGEKVEDSTMPIRRT KLGEKVEDSTMPIRRTVNSTRETPPKSKLA K L G R R T 0 2 0 1 0 0 2 1 0 1 1 1 1 0 1 1 1 0 0 1 0 0 14 2 1629.8508 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 30 43 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3;4 0.0042208 31.526 By matching By MS/MS By matching 1 2 1 0.99453 1.0343 40.096 4 Median 1.5376 1.5651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63885 0.74735 0.9753 2 0 Median 1.6399 1.4215 NaN 1 0 Median 17541000 9968500 7572500 1345900 645200 700730 0 0 0 0 0 0 0 0 0 15836000 9193200 6643100 358700 130030 228670 19930 3075 20779 104218;104219;104220;104221 105813;105814;105815 105815 3 LGELAGESVENQEVQSK SVGSGSRPSSDLQARLGELAGESVENQEVQ ELAGESVENQEVQSKKPIPSKPQLKQLQVL R L G S K K 1 0 1 0 0 2 4 2 0 0 2 1 0 0 0 2 0 0 0 2 0 0 17 0 1815.885 Q96T58 Q96T58 1088 1104 SPEN Msx2-interacting protein yes yes 2 2.104E-05 63.537 By MS/MS By MS/MS 1 1 1.084 1.1536 1.9571 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0837 1.1697 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0843 1.1377 NaN 1 0 Median NaN NaN NaN 0 0 Median 8467000 4129700 4337200 0 0 0 0 0 0 4149000 1999600 2149300 0 0 0 4318000 2130100 2187900 0 0 0 19931 3741 20780 104222;104223 105816;105817;105818;105819 105818 4 LGELILTSESSR VRQKIAITHKNKINRLGELILTSESSRYQF INRLGELILTSESSRYQFRNLADCLQKIRD R L G S R Y 0 1 0 0 0 0 2 1 0 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1303.6983 Q14197;J3KS15 Q14197 130 141 ICT1 Peptidyl-tRNA hydrolase ICT1, mitochondrial yes no 2 3.5722E-06 120.09 By MS/MS By MS/MS By MS/MS 1 1 1 1.1964 1.1369 17.761 3 Median 1.1964 1.1369 NaN 1 0 Median 1.6855 1.4252 NaN 1 1 Median 1.0448 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42240000 17265000 24976000 27167000 11056000 16110000 5295200 1780400 3514800 9778600 4428100 5350400 0 0 0 0 0 0 0 0 0 19932 1329 20781 104224;104225;104226 105820;105821;105822;105823;105824 105822 5 LGELKEQYSTSLAQSEAELK GHNLTPEEQQMLQQKLGELKEQYSTSLAQS EQYSTSLAQSEAELKQVQTLQDELQKFLQD K L G L K Q 2 0 0 0 0 2 4 1 0 0 4 2 0 0 0 3 1 0 1 0 0 0 20 1 2223.1271 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3851 3870 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 5.9254E-14 99.86 By MS/MS By matching By MS/MS 1 1 1 1.0484 1.0707 16.658 3 Median 1.0484 1.1414 NaN 1 0 Median 1.1252 1.0707 NaN 1 0 Median 0.73384 0.83286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32248000 14747000 17500000 22551000 9782700 12768000 3275800 1723100 1552700 6420900 3241400 3179400 0 0 0 0 0 0 0 0 0 19933 1220 20782 104227;104228;104229 105825;105826;105827 105825 3 LGELLGHPSFQVK YKVWMRHRYHSCCNRLGELLGHPSFQVKEL NRLGELLGHPSFQVKELALSALLKFVQLEG R L G V K E 0 0 0 0 0 1 1 2 1 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1423.7823 Q9BVI4;F5H303 Q9BVI4 103 115 NOC4L Nucleolar complex protein 4 homolog yes no 3 0.032308 19.286 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2441 1.0734 10.324 5 Median NaN NaN NaN 0 0 Median 1.2441 1.1039 NaN 1 0 Median 0.90208 0.91031 NaN 1 0 Median 1.2948 1.1306 NaN 1 0 Median 0.96789 0.92151 NaN 1 0 Median 1.2797 1.0734 NaN 1 0 Median 12300000 5796900 6502800 0 0 0 572060 254300 317760 4433600 2329100 2104500 512440 185100 327340 5114400 2277900 2836500 1667300 750550 916710 19934 3854 20783 104230;104231;104232;104233;104234 105828;105829;105830 105829 3 LGELPEINGK NQGQSYEIRMLDNRKLGELPEINGKLVKSI LDNRKLGELPEINGKLVKSIFRVVFHDRRL K L G G K L 0 0 1 0 0 0 2 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 10 0 1068.5815 Q12800;F8VX55;F8VWL0 Q12800 105 114 TFCP2 Alpha-globin transcription factor CP2 yes no 2 0.022709 51.346 By MS/MS 1 0.79156 0.79844 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79156 0.79844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4480000 2322700 2157300 0 0 0 0 0 0 4480000 2322700 2157300 0 0 0 0 0 0 0 0 0 19935 2760 20784 104235 105831 105831 1 LGELPSWILMR PAPVPVKDKKLLEVKLGELPSWILMRDFSP LEVKLGELPSWILMRDFSPSGIFGAFQRGY K L G M R D 0 1 0 0 0 0 1 1 0 1 3 0 1 0 1 1 0 1 0 0 0 0 11 0 1313.7166 C9JJT5;G3V325;P56134;C9JU26 P56134 23 33 ATP5J2-PTCD1;ATP5J2 ATP synthase subunit f, mitochondrial no no 2 0.00013837 87.308 By MS/MS By MS/MS By matching 8 6 1 1.1698 1.0097 13.738 15 Median 0.93225 0.92836 16.033 8 0 Median 1.2542 1.042 4.1125 6 1 Median 1.2382 1.2531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49892000 23778000 26114000 21533000 11050000 10484000 25934000 11563000 14372000 2424500 1165700 1258800 0 0 0 0 0 0 0 0 0 19936 2506;703 20785;20786 104236;104237;104238;104239;104240;104241;104242;104243;104244;104245;104246;104247;104248;104249;104250 105832;105833;105834;105835;105836;105837;105838 105834 249 7 LGELTGTVK IESETVRTSEVLRKKLGELTGTVKESLHEV EVLRKKLGELTGTVKESLHEVSKSDLGRKI K L G V K E 0 0 0 0 0 0 1 2 0 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 916.52295 O43615;M0QXU7;M0R301 O43615 122 130 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.0017805 77.732 By MS/MS By matching 1 1 1.0333 0.87203 33.774 2 Median NaN NaN NaN 0 0 Median 1.286 1.1073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8302 0.68678 NaN 1 0 Median 3510000 1623400 1886600 0 0 0 3085800 1392600 1693200 0 0 0 0 0 0 0 0 0 424190 230810 193380 19937 1577 20787 104251;104252 105839 105839 1 LGELTMQLHPVADSSPAGAK KVGEIFSAAGAAFTKLGELTMQLHPVADSS MQLHPVADSSPAGAKWTETEIEMLRAAVKR K L G A K W 3 0 0 1 0 1 1 2 1 0 3 1 1 0 2 2 1 0 0 1 0 0 20 0 2021.0252 F8W038;Q8IXM2;H0YIS7 F8W038 22 41 C17orf49;BAP18;RNASEK-C17orf49 Chromatin complexes subunit BAP18 yes no 2;3 7.1869E-09 75.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 4 1 3 0.66451 0.64946 30.27 12 Median 0.96488 0.90428 55.765 2 0 Median 1.33 1.1494 13.667 2 0 Median 0.66451 0.63719 8.2151 4 0 Median 1.1094 0.91858 NaN 1 0 Median 0.62393 0.63685 3.4034 3 0 Median NaN NaN NaN 0 0 Median 86489000 50786000 35703000 23700000 13777000 9922600 1743000 792020 950990 47926000 27957000 19969000 2163900 1013500 1150400 10956000 7246100 3710000 0 0 0 19938 1079 20788;20789 104253;104254;104255;104256;104257;104258;104259;104260;104261;104262;104263;104264 105840;105841;105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852 105843 364 13 LGEMWNNLNDSEK KSTNPGISIGDVAKKLGEMWNNLNDSEKQP KKLGEMWNNLNDSEKQPYITKAAKLKEKYE K L G E K Q 0 0 3 1 0 0 2 1 0 0 2 1 1 0 0 1 0 1 0 0 0 0 13 0 1548.6879 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 127 139 HMGB3 High mobility group protein B3 yes no 2 0.00015584 83 By matching By MS/MS By matching 1 1 1 1.0641 0.8955 9.6194 3 Median 0.93433 0.88583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1218 1.0518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0641 0.8955 NaN 1 0 Median 28996000 13104000 15892000 2444000 1241900 1202100 0 0 0 24438000 10966000 13472000 0 0 0 0 0 0 2114300 896910 1217400 19939 880 20790 104265;104266;104267 105853 105853 1 LGEMWNNLNDSEKQPYITK KSTNPGISIGDVAKKLGEMWNNLNDSEKQP WNNLNDSEKQPYITKAAKLKEKYEKDVADY K L G T K A 0 0 3 1 0 1 2 1 0 1 2 2 1 0 1 1 1 1 1 0 0 0 19 1 2279.0892 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 127 145 HMGB3 High mobility group protein B3 yes no 3 2.3122E-05 46.159 By MS/MS By MS/MS By matching 1 1 1 0.71013 0.70691 122.71 3 Median 0.86484 0.87947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71013 0.70691 NaN 1 0 Median 0.10325 0.094935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24088000 15151000 8937100 9156000 4722800 4433200 0 0 0 13696000 9352000 4343600 1236300 1076000 160310 0 0 0 0 0 0 19940 880 20791 104268;104269;104270 105854;105855;105856 105855 3 LGEMWNNTAADDKQPYEK KGEHPGLSIGDVAKKLGEMWNNTAADDKQP MWNNTAADDKQPYEKKAAKLKEKYEKDIAA K L G E K K 2 0 2 2 0 1 2 1 0 0 1 2 1 0 1 0 1 1 1 0 0 0 18 1 2108.9473 P09429;Q5T7C4 P09429 129 146 HMGB1 High mobility group protein B1 yes no 2;3 6.8557E-13 133.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 6 3 0.94525 0.86588 11.85 22 Median 0.85723 0.85081 11.425 4 0 Median 0.91758 0.83659 7.3652 3 0 Median 0.84197 0.84881 19.346 6 0 Median 0.99991 0.88543 3.4451 6 0 Median NaN NaN NaN 0 0 Median 1.0673 0.92626 10.561 3 0 Median 382360000 195390000 186970000 50322000 26938000 23384000 24436000 11833000 12603000 231140000 119040000 112100000 64233000 31442000 32791000 0 0 0 12224000 6128300 6095700 19941 1915 20792;20793 104271;104272;104273;104274;104275;104276;104277;104278;104279;104280;104281;104282;104283;104284;104285;104286;104287;104288;104289;104290;104291;104292 105857;105858;105859;105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882 105880 693 26 LGEMWNNTAADDKQPYEKK KGEHPGLSIGDVAKKLGEMWNNTAADDKQP WNNTAADDKQPYEKKAAKLKEKYEKDIAAY K L G K K A 2 0 2 2 0 1 2 1 0 0 1 3 1 0 1 0 1 1 1 0 0 0 19 2 2237.0423 P09429;Q5T7C4 P09429 129 147 HMGB1 High mobility group protein B1 yes no 3;4 2.9471E-09 85.636 By MS/MS By MS/MS By MS/MS 2 2 7 0.9574 0.92196 6.5242 11 Median NaN NaN NaN 0 0 Median 0.88426 0.86531 8.969 2 0 Median 0.83686 0.94426 10.365 2 0 Median 1.0102 0.92891 4.8746 7 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129050000 64647000 64401000 0 0 0 9681100 5088200 4592900 40398000 21818000 18580000 78969000 37741000 41228000 0 0 0 0 0 0 19942 1915 20794;20795 104293;104294;104295;104296;104297;104298;104299;104300;104301;104302;104303 105883;105884;105885;105886;105887;105888;105889;105890;105891;105892;105893;105894;105895;105896;105897;105898 105888 693 16 LGEMWSEQSAK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP TAKKLGEMWSEQSAKDKQPYEQKAAKLKEK K L G A K D 1 0 0 0 0 1 2 1 0 0 1 1 1 0 0 2 0 1 0 0 0 0 11 0 1264.5758 P26583 P26583 129 139 HMGB2 High mobility group protein B2 yes yes 2 0.00012467 149.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 4 1 3 1.1979 1.0246 12.929 14 Median 1.0629 0.99575 4.9849 2 0 Median 1.1124 0.93404 NaN 1 0 Median 1.0811 1.0152 7.7132 3 0 Plateau 1.3271 1.1112 13.954 4 0 Median 1.1765 1.1978 NaN 1 0 Median 1.3805 1.1405 11.529 3 1 Median 387280000 181100000 206180000 47427000 21514000 25913000 6049200 2751800 3297400 252090000 121250000 130850000 62867000 27366000 35501000 8983600 4133200 4850300 9865900 4093500 5772500 19943 2146 20796;20797 104304;104305;104306;104307;104308;104309;104310;104311;104312;104313;104314;104315;104316;104317 105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911;105912;105913;105914;105915;105916;105917;105918;105919 105903 909 21 LGEMWSEQSAKDKQPYEQK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP WSEQSAKDKQPYEQKAAKLKEKYEKDIAAY K L G Q K A 1 0 0 1 0 3 3 1 0 0 1 3 1 0 1 2 0 1 1 0 0 0 19 2 2281.0685 P26583 P26583 129 147 HMGB2 High mobility group protein B2 yes yes 3;4 3.8457E-08 62.658 By MS/MS 2 0.98247 0.90338 1.924 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98247 0.90338 1.924 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11084000 5434300 5649700 0 0 0 0 0 0 0 0 0 11084000 5434300 5649700 0 0 0 0 0 0 19944 2146 20798 104318;104319 105920;105921;105922 105920 3 LGENDKTDLDVIR DYILYYGGKKEDFKRLGENDKTDLDVIREN KRLGENDKTDLDVIRENHRFLWNEEDEMDM R L G I R E 0 1 1 3 0 0 1 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 13 1 1486.7627 Q70Z53 Q70Z53 98 110 FRA10AC1 Protein FRA10AC1 yes yes 3 0.00020335 68.809 By MS/MS By MS/MS 1 1 0.96682 0.96528 5.8262 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88433 1.0059 NaN 1 0 Median 1.057 0.92632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9358200 4680000 4678200 0 0 0 0 0 0 7809900 3981900 3828000 1548300 698090 850170 0 0 0 0 0 0 19945 3209 20799 104320;104321 105923;105924;105925 105923 3 LGENMILK REGSLKDQLALAIGKLGENMILKRAAWVKV LALAIGKLGENMILKRAAWVKVPSGFYVGS K L G L K R 0 0 1 0 0 0 1 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 916.50519 P43897;C9JT21 P43897 193 200 TSFM Elongation factor Ts, mitochondrial;Elongation factor Ts yes no 2 0.0057212 74.255 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0986 0.96952 16.586 4 Median 0.92551 0.84931 NaN 1 0 Median 1.304 1.0942 NaN 1 0 Median 0.8961 0.85901 NaN 1 0 Median 1.3934 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27870000 13644000 14226000 14043000 7281500 6761800 5404600 2409500 2995100 5204400 2623300 2581100 3217300 1329700 1887600 0 0 0 0 0 0 19946 2328 20800 104322;104323;104324;104325 105926;105927;105928;105929;105930;105931;105932 105927 7 LGEPIPISK DMELEMAFFVGPGNRLGEPIPISKAHEHIF VGPGNRLGEPIPISKAHEHIFGMVLMNDWS R L G S K A 0 0 0 0 0 0 1 1 0 2 1 1 0 0 2 1 0 0 0 0 0 0 9 0 952.55933 P16930 P16930 212 220 FAH Fumarylacetoacetase yes yes 2 0.014203 44.719 By MS/MS 1 0.73678 0.68809 NaN 1 Median 0.73678 0.68809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5615700 3272500 2343200 5615700 3272500 2343200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19947 2032 20801 104326 105933 105933 1 LGEQMADLHLYNQK MEHLKMKSLSSQASKLGEQMADLHLYNQKL KLGEQMADLHLYNQKLREKLKEEENTVGRR K L G Q K L 1 0 1 1 0 2 1 1 1 0 3 1 1 0 0 0 0 0 1 0 0 0 14 0 1658.8086 Q9H479 Q9H479 103 116 FN3K Fructosamine-3-kinase yes yes 2;3 0.00028404 76.143 By matching By MS/MS 1 2 0.85079 0.81897 17.726 3 Median 0.85894 0.82267 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73162 0.70323 21.549 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24316000 12733000 11584000 4827900 2463900 2364100 0 0 0 19488000 10269000 9219500 0 0 0 0 0 0 0 0 0 19948 3962 20802 104327;104328;104329 105934;105935;105936 105936 3 LGESQTLQQFSR RWRRLKAQMIEKRSKLGESQTLQQFSRDVD RSKLGESQTLQQFSRDVDEIEAWISEKLQT K L G S R D 0 1 0 0 0 3 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1392.6997 A0A0D9SF54;Q13813 Q13813 1547 1558 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 5.3405E-53 236.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 2 2 1.0739 0.99177 22.141 16 Median 0.96274 0.91968 15.082 2 0 Median 1.3092 1.0807 4.7846 4 3 Median 0.92022 1.0033 45.849 3 2 Median 1.1106 0.9782 15.515 3 2 Plateau 0.92542 0.95916 9.2001 2 0 Median 1.175 0.96331 2.2051 2 0 Median 411700000 199800000 211900000 61920000 30029000 31891000 93057000 38687000 54371000 166280000 86935000 79341000 44491000 21498000 22993000 30900000 15746000 15154000 15055000 6906500 8148300 19949 264;2838 20803 104330;104331;104332;104333;104334;104335;104336;104337;104338;104339;104340;104341;104342;104343;104344;104345 105937;105938;105939;105940;105941;105942;105943;105944;105945;105946;105947;105948;105949;105950;105951;105952;105953;105954;105955;105956 105946 19 LGETDEEKLFVETGK STCQRFVEKYTELQKLGETDEEKLFVETGK LGETDEEKLFVETGKALLAEGVILRRVGEA K L G G K A 0 0 0 1 0 0 4 2 0 0 2 2 0 1 0 0 2 0 0 1 0 0 15 1 1693.841 Q9Y3D9;J3QLR8 Q9Y3D9 109 123 MRPS23 28S ribosomal protein S23, mitochondrial yes no 3 0.033893 17.219 By matching By MS/MS 1 1 1.0402 1.0042 4.6112 2 Median 0.95583 0.97198 NaN 1 0 Median 1.132 1.0375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10531000 5059500 5471600 9276300 4352000 4924300 1254800 707490 547340 0 0 0 0 0 0 0 0 0 0 0 0 19950 4424 20804 104346;104347 105957 105957 1 LGETYKDHENIVIAK PWCGHCKQLAPIWDKLGETYKDHENIVIAK LGETYKDHENIVIAKMDSTANEVEAVKVHS K L G A K M 1 0 1 1 0 0 2 1 1 2 1 2 0 0 0 0 1 0 1 1 0 0 15 1 1728.9046 P07237;H7BZ94;H0Y3Z3 P07237 410 424 P4HB Protein disulfide-isomerase yes no 2;3;4 1.0531E-08 114.76 By MS/MS By MS/MS By MS/MS By MS/MS 7 6 3 3 1.3406 1.3314 17.093 19 Median 1.1982 1.1073 7.1109 7 0 Median 1.6525 1.5414 12.897 6 0 Median 1.2255 1.2792 2.6244 3 0 Median 1.5322 1.5316 5.4081 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 406080000 173410000 232670000 241560000 109010000 132540000 112170000 42252000 69914000 26192000 11461000 14731000 26162000 10686000 15476000 0 0 0 0 0 0 19951 1883 20805 104348;104349;104350;104351;104352;104353;104354;104355;104356;104357;104358;104359;104360;104361;104362;104363;104364;104365;104366 105958;105959;105960;105961;105962;105963;105964;105965;105966;105967;105968;105969;105970;105971;105972;105973;105974;105975;105976;105977;105978;105979;105980 105962 23 LGEVSTYTDDLQK KSELTQQLNTLFQDKLGEVSTYTDDLQKKL DKLGEVSTYTDDLQKKLVPFATELHERLTK K L G Q K K 0 0 0 2 0 1 1 1 0 0 2 1 0 0 0 1 2 0 1 1 0 0 13 0 1467.7093 CON__Q32PJ2 CON__Q32PJ2 66 78 yes yes 2 0.012278 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1094900 1094900 0 0 0 0 0 0 0 0 0 0 0 0 0 1094900 1094900 0 0 0 0 + 19952 775 20806 104367 105981 105981 1 LGEVVNTHGPVEPDKDNIR SKRSYQFWDTQPVPKLGEVVNTHGPVEPDK VNTHGPVEPDKDNIRQEPYTLPQGFTWDAL K L G I R Q 0 1 2 2 0 0 2 2 1 1 1 1 0 0 2 0 1 0 0 3 0 0 19 1 2088.06 P30419;K7EN82 P30419 128 146 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 3;4 5.6658E-25 120.11 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 4 0.72309 0.71927 47.045 12 Median 0.67781 0.67936 3.8271 2 1 Median 0.7249 0.66142 11.188 2 1 Median 0.71095 0.79738 7.9939 4 4 Median 0.82512 0.77428 84.247 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187400000 101250000 86144000 34486000 19104000 15382000 15260000 8225400 7034800 45009000 25869000 19140000 92642000 48055000 44587000 0 0 0 0 0 0 19953 2193 20807 104368;104369;104370;104371;104372;104373;104374;104375;104376;104377;104378;104379 105982;105983;105984;105985;105986;105987;105988;105989;105990;105991;105992;105993;105994;105995 105994 14 LGEWDLPEAVQR QSKRTVNIRTRDNRRLGEWDLPEAVQRLVE NRRLGEWDLPEAVQRLVELQNTRVPNAEEI R L G Q R L 1 1 0 1 0 1 2 1 0 0 2 0 0 0 1 0 0 1 0 1 0 0 12 0 1411.7096 Q9BW92;U3KQG0;F6S7Q7 Q9BW92 691 702 TARS2 Threonine--tRNA ligase, mitochondrial yes no 2 0.0039313 44.863 By MS/MS By matching By matching 1 1 1 1.1817 1.0811 16.286 3 Median 0.84454 0.83551 NaN 1 0 Median 1.1817 1.0811 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3595 1.1294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2715000 1253500 1461600 1991200 928770 1062400 545870 251030 294840 0 0 0 177980 73655 104320 0 0 0 0 0 0 19954 3867 20808 104380;104381;104382 105996 105996 1 LGEWVGLCK AEHQINLIKVDDNKKLGEWVGLCKIDREGK VDDNKKLGEWVGLCKIDREGKPRKVVGCSC K L G C K I 0 0 0 0 1 0 1 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 9 0 1060.5376 P25398 P25398 85 93 RPS12 40S ribosomal protein S12 yes yes 2 0.0023677 72.485 By MS/MS By MS/MS By MS/MS 1 2 1 1.154 0.99752 13.137 4 Median 1.084 0.98573 NaN 1 0 Median 1.1405 0.94332 9.5835 2 0 Median 1.2677 1.2104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55177000 24311000 30866000 12620000 5868800 6751700 26620000 11707000 14912000 15936000 6734900 9201600 0 0 0 0 0 0 0 0 0 19955 2132 20809 104383;104384;104385;104386 105997;105998;105999;106000;106001;106002;106003 105998 7 LGEYEDVSR DDGCRIHVIDHSGARLGEYEDVSRVEKYTI DHSGARLGEYEDVSRVEKYTISQEAYDQRQ R L G S R V 0 1 0 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1066.4931 K7EK42;A0A494C0X0;Q99426;K7EP07;K7EL99 K7EK42 95 103 TBCB Tubulin-folding cofactor B yes no 2 0.0004404 127.46 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.5517 1.3367 6.3357 6 Median 1.5463 1.4446 NaN 1 0 Median 1.6321 1.3712 7.1096 3 0 Median NaN NaN NaN 0 0 Median 1.482 1.2806 NaN 1 0 Median 1.2937 1.303 NaN 1 0 Median NaN NaN NaN 0 0 Median 46580000 17587000 28993000 8783000 3327100 5455900 34417000 13007000 21411000 0 0 0 1037700 429740 607930 2342200 823560 1518600 0 0 0 19956 462 20810 104387;104388;104389;104390;104391;104392 106004;106005;106006;106007 106007 4 LGEYGFQNALIVR EPQNLIKQNCDQFEKLGEYGFQNALIVRYT EKLGEYGFQNALIVRYTRKVPQVSTPTLVE K L G V R Y 1 1 1 0 0 1 1 2 0 1 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1478.7882 CON__P02769 CON__P02769 421 433 yes yes 2 3.4301E-22 159.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 6 1 7 0.076213 0.076055 134.2 25 Median 0.031276 0.029508 191.51 6 6 Median 0.076213 0.063686 93.111 5 5 Median 0.10147 0.10502 110.35 6 6 Median 0.03346 0.027382 NaN 1 1 Median 0.19101 0.19798 67.775 7 7 Median NaN NaN NaN 0 0 Median 1285800000 1267500000 18314000 758730000 752820000 5912100 409660000 407630000 2033800 75055000 72263000 2792800 323680 314630 9054.2 42073000 34507000 7566400 0 0 0 + 19957 746 20811 104393;104394;104395;104396;104397;104398;104399;104400;104401;104402;104403;104404;104405;104406;104407;104408;104409;104410;104411;104412;104413;104414;104415;104416;104417;104418 106008;106009;106010;106011;106012;106013;106014;106015;106016;106017;106018;106019;106020;106021;106022;106023;106024;106025;106026;106027;106028;106029;106030;106031;106032;106033;106034;106035;106036 106010 29 LGFAGLVQEISFGTTK GGRIVPRFSELTAEKLGFAGLVQEISFGTT GFAGLVQEISFGTTKDKMLVIEQCKNSRAV K L G T K D 1 0 0 0 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 1 0 0 16 0 1666.893 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 353 368 CCT5 T-complex protein 1 subunit epsilon yes no 2 1.8355E-06 88.187 By MS/MS By MS/MS By matching By matching 4 2 1 1 1.2026 1.0936 13.743 8 Median 1.1936 1.1483 20.51 4 0 Median 1.1852 1.0285 4.7005 2 0 Median NaN NaN NaN 0 0 Median 1.2731 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2748 1.0937 NaN 1 0 Median 38687000 17315000 21372000 31631000 14016000 17614000 6380400 2975600 3404900 0 0 0 486280 231310 254970 0 0 0 189110 91580 97534 19958 2364 20812 104419;104420;104421;104422;104423;104424;104425;104426 106037;106038;106039 106037 3 LGFATSSDVIEMK LQMDELKCRKRVLRRLGFATSSDVIEMKGR RRLGFATSSDVIEMKGRVACEISSADELLL R L G M K G 1 0 0 1 0 0 1 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 13 0 1396.6908 P42285 P42285 861 873 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 1.9408E-05 94.616 By MS/MS By matching By matching 2 1 1 1.2311 1.1663 35.684 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3051 1.4132 19.306 2 0 Median 1.3122 1.1033 NaN 1 0 Median 0.61759 0.68852 NaN 1 0 Median NaN NaN NaN 0 0 Median 21549000 10409000 11139000 0 0 0 0 0 0 18036000 8491300 9544800 1464000 675090 788920 2048400 1242800 805660 0 0 0 19959 2309 20813 104427;104428;104429;104430 106040;106041 106041 2 LGFDKENVYDELR YTEEEDRFLICMLHKLGFDKENVYDELRQC HKLGFDKENVYDELRQCIRNSPQFRFDWFL K L G L R Q 0 1 1 2 0 0 2 1 0 0 2 1 0 1 0 0 0 0 1 1 0 0 13 1 1596.7784 O60264 O60264 962 974 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 0.00053924 50.563 By MS/MS By MS/MS By matching 1 2 1 1.0898 1.1258 9.3717 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99571 1.1288 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0898 1.2177 14.208 2 0 Median 1.2733 1.1229 NaN 1 0 Median 26686000 13641000 13045000 0 0 0 0 0 0 13958000 7169300 6788800 0 0 0 12347000 6308400 6038200 381190 163630 217560 19960 1608 20814 104431;104432;104433;104434 106042;106043;106044 106043 3 LGFEDGSVLK GTIGLIHAVANNQDKLGFEDGSVLKQFLSE NNQDKLGFEDGSVLKQFLSETEKMSPEDRA K L G L K Q 0 0 0 1 0 0 1 2 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1063.555 P09936;D6RE83;D6R956;D6R974 P09936 106 115 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00041856 75.378 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 1 2 1.2116 1.1001 24.584 9 Median 1.2113 1.1121 21.954 3 0 Median 1.0941 0.91586 13.015 2 0 Median 1.2348 1.158 NaN 1 0 Median 1.3314 1.1001 NaN 1 0 Median 0.9956 1.0186 56.915 2 0 Median NaN NaN NaN 0 0 Median 401440000 181660000 219770000 310750000 142520000 168230000 55118000 23879000 31239000 30999000 13087000 17912000 1181800 481300 700530 3385000 1695100 1689900 0 0 0 19961 1923 20815 104435;104436;104437;104438;104439;104440;104441;104442;104443 106045;106046;106047;106048;106049;106050;106051;106052;106053 106046 9 LGFEEFK CRSMVAVMDSDTTGKLGFEEFKYLWNNIKR MDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ K L G F K Y 0 0 0 0 0 0 2 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 0 868.43307 A0A0C4DGQ5;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7EKD8;K7ELJ7;U3KPR7;Q96L46 A0A0C4DGQ5 159 165 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 2 0.017411 65.803 By MS/MS By MS/MS By matching 1 1 1 1.1044 1.0208 27.116 3 Median 1.1044 1.0208 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9768 0.91718 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8373 1.5334 NaN 1 0 Median 49863000 20970000 28893000 40642000 16743000 23899000 0 0 0 8601700 3923900 4677800 0 0 0 0 0 0 619980 303060 316910 19962 251 20816 104444;104445;104446 106054;106055 106054 2 LGFEGGQTPFYIR GRGHKGERQRGTRPRLGFEGGQTPFYIRIP PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQ R L G I R I 0 1 0 0 0 1 1 3 0 1 1 0 0 2 1 0 1 0 1 0 0 0 13 0 1483.746 Q9P015;E5RHF4 Q9P015 65 77 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 5.9218E-07 105.98 By MS/MS By MS/MS 2 1 0.88376 0.84788 5.1899 3 Median 0.88121 0.83761 1.7245 2 0 Median NaN NaN NaN 0 0 Median 0.93673 0.91408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17201000 9142900 8058300 15079000 7988600 7090600 0 0 0 2122000 1154300 967720 0 0 0 0 0 0 0 0 0 19963 4197 20817 104447;104448;104449 106056;106057;106058 106057 3 LGFESIYK EQEIVASSPSLSGLKLGFESIYKIPFADAL PSLSGLKLGFESIYKIPFADALDLFRGRKV K L G Y K I 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 0 0 0 8 0 955.50148 P49643 P49643 178 185 PRIM2 DNA primase large subunit yes yes 2 0.054439 33.797 By matching By matching By MS/MS By matching 1 1 1 2 1.1392 1.0907 11.694 5 Median 0.95049 0.93304 NaN 1 0 Median 1.1392 0.99408 NaN 1 0 Median 1.0643 1.0907 NaN 1 0 Median 1.3357 1.2065 4.2638 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6094100 2773600 3320500 1301600 680590 621050 1179400 539160 640220 3083000 1341400 1741600 530110 212470 317640 0 0 0 0 0 0 19964 2389 20818 104450;104451;104452;104453;104454 106059 106059 1 LGFHLPLEVAYQR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY PRLGFHLPLEVAYQRGYLNKDTHDQLSEPS R L G Q R G 1 1 0 0 0 1 1 1 1 0 3 0 0 1 1 0 0 0 1 1 0 0 13 0 1541.8354 Q15149;H0YDN1 Q15149 3951 3963 PLEC Plectin yes no 3 1.7184E-05 86.313 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 1 1 1 1.1013 0.97298 22.583 10 Median 0.96935 0.95578 19.937 2 0 Median 1.2831 1.0917 27.186 3 0 Median 0.88364 0.96888 26.358 2 0 Median 1.119 0.97011 NaN 1 0 Median 0.79775 0.85166 NaN 1 0 Median 0.9459 0.77275 NaN 1 0 Median 36797000 17114000 19682000 20165000 9771500 10393000 9284000 3984600 5299500 5434500 2494400 2940100 105150 43548 61605 1407400 658200 749240 401130 162150 238980 19965 2933 20819 104455;104456;104457;104458;104459;104460;104461;104462;104463;104464 106060;106061;106062;106063 106061 4 LGFITNNSSK GAPEALRALRARGKRLGFITNNSSKTRAAY ARGKRLGFITNNSSKTRAAYAEKLRRLGFG R L G S K T 0 0 2 0 0 0 0 1 0 1 1 1 0 1 0 2 1 0 0 0 0 0 10 0 1079.5611 A6NDG6 A6NDG6 63 72 PGP Phosphoglycolate phosphatase yes yes 2 0.0011045 108.98 By MS/MS 1 1.3102 1.1901 NaN 1 Median 1.3102 1.1901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21323000 9963300 11360000 21323000 9963300 11360000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19966 506 20820 104465 106064 106064 1 LGFLHSGTAK SVPSQKTYQGSYGFRLGFLHSGTAKSVTCT SYGFRLGFLHSGTAKSVTCTYSPALNKMFC R L G A K S 1 0 0 0 0 0 0 2 1 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1029.5607 A0A0U1RQC9;P04637;J3KP33;E7EQX7;E7EMR6;E9PCY9;S4R334 A0A0U1RQC9 72 81 TP53 Cellular tumor antigen p53 yes no 2 0.00034726 84.522 By MS/MS By MS/MS By MS/MS 1 1 1 1.1223 1.0531 11.408 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1223 1.1159 NaN 1 0 Median 1.1732 1.0531 NaN 1 0 Median 0.94029 0.89546 NaN 1 0 Median NaN NaN NaN 0 0 Median 15983000 7684200 8298900 0 0 0 0 0 0 2689300 1238500 1450800 7169400 3304500 3864900 6124400 3141200 2983200 0 0 0 19967 299 20821 104466;104467;104468 106065;106066;106067 106067 3 LGFSEVELVQMVVDGVK TAAVGGVFDVSNADRLGFSEVELVQMVVDG FSEVELVQMVVDGVKLLIEMEQRLEQGQAI R L G V K L 0 0 0 1 0 1 2 2 0 0 2 1 1 1 0 1 0 0 0 5 0 0 17 0 1847.9703 P12277;H0YJG0 P12277 342 358 CKB Creatine kinase B-type yes no 2 1.8551E-31 198.14 By matching By MS/MS By matching 2 3 1 0.93671 0.85563 35.553 6 Median 0.80893 0.7864 0.4583 2 0 Median 1.1202 0.95336 52.278 3 0 Plateau NaN NaN NaN 0 0 Median 1.0812 0.97756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71646000 33100000 38546000 1187300 657580 529740 70417000 32426000 37990000 0 0 0 42348 16810 25538 0 0 0 0 0 0 19968 1980 20822;20823 104469;104470;104471;104472;104473;104474 106068;106069;106070 106070 760 3 LGFTPSVTIEQR VRHHLVQHMVSAMQRLGFTPSVTIEQRRLA MQRLGFTPSVTIEQRRLAVDLSEVVIKWEL R L G Q R R 0 1 0 0 0 1 1 1 0 1 1 0 0 1 1 1 2 0 0 1 0 0 12 0 1346.7194 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1973 1984 TRRAP Transformation/transcription domain-associated protein yes no 2 6.993E-06 159.4 By matching By MS/MS By MS/MS 1 2 1 0.98742 0.96701 72.889 4 Median NaN NaN NaN 0 0 Median 4.5515 3.9646 NaN 1 0 Median 0.89983 0.96441 14.304 2 1 Median 1.0062 0.87633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57713000 31881000 25832000 0 0 0 1015000 201410 813630 53618000 30207000 23411000 3079900 1472400 1607500 0 0 0 0 0 0 19969 991 20824 104475;104476;104477;104478 106071;106072;106073;106074 106071 4 LGFTQGDVGLAMGK ELEQFAKTFKQRRIKLGFTQGDVGLAMGKL KLGFTQGDVGLAMGKLYGNDFSQTTISRFE K L G G K L 1 0 0 1 0 1 0 4 0 0 2 1 1 1 0 0 1 0 0 1 0 0 14 0 1392.7071 P14859;A0A0C4DG88;Q9UKI9;U3KQ96;U3KQN1;H0YNW1;H0YLL6;B5ME60;H0YKT2;P09086 P14859 302 315 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain protein;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2 yes no 2 0.026355 42.743 By MS/MS 1 1.1053 1.1748 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1053 1.1748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2742900 1048200 1694600 0 0 0 0 0 0 2742900 1048200 1694600 0 0 0 0 0 0 0 0 0 19970 2010 20825 104479 106075 106075 1 LGFVAGVINR SLLEPSEMGRGTPLRLGFVAGVINRERIPT GTPLRLGFVAGVINRERIPTFERMLWRVCR R L G N R E 1 1 1 0 0 0 0 2 0 1 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1044.608 Q93050;B7Z641;B7Z2A9;K7EN36;K7EPG4 Q93050 168 177 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.00034189 100.19 By MS/MS By MS/MS By matching 2 3 1 1.4322 1.1883 22.821 6 Median 1.7334 1.6566 8.7942 2 0 Median 1.4039 1.1302 6.0106 3 0 Median NaN NaN NaN 0 0 Median 1.1108 0.95344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80170000 33588000 46582000 36362000 15567000 20795000 43536000 17892000 25644000 0 0 0 272490 129890 142600 0 0 0 0 0 0 19971 3576 20826 104480;104481;104482;104483;104484;104485 106076;106077;106078;106079;106080;106081;106082 106077 7 LGFVSKPSVSATEK SDLPQNVTKLSVKDRLGFVSKPSVSATEKV RLGFVSKPSVSATEKVLSTSTGLTKTVYNP R L G E K V 1 0 0 0 0 0 1 1 0 0 1 2 0 1 1 3 1 0 0 2 0 0 14 1 1448.7875 Q5T8P6 Q5T8P6 673 686 RBM26 RNA-binding protein 26 no no 3 0.0016481 37.555 By MS/MS By matching 1 1 0.94236 0.98436 8.6395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9135 1.0464 NaN 1 0 Median 0.97213 0.92602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396200 3089800 2306400 0 0 0 0 0 0 4101900 2375900 1726000 1294300 713890 580390 0 0 0 0 0 0 19972 3097 20827 104486;104487 106083 106083 1 LGGAGMER GSVPGIERMGPGIDRLGGAGMERMGAGLGH MGPGIDRLGGAGMERMGAGLGHGMDRVGSE R L G E R M 1 1 0 0 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 789.38032 A0A087X0X3;P52272;M0R2T0;M0QZM1 A0A087X0X3 411 418 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.043248 54.611 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4187900 0 4187900 0 0 0 4187900 0 4187900 0 0 0 0 0 0 0 0 0 0 0 0 19973 116;1423 20828 104488;104489 106084;106085 106084 2 LGGAVLSFSEATSSVQK VSTRTSSSFAAAMARLGGAVLSFSEATSSV GAVLSFSEATSSVQKGESLADSVQTMSCYA R L G Q K G 2 0 0 0 0 1 1 2 0 0 2 1 0 1 0 4 1 0 0 2 0 0 17 0 1679.873 F8VPD4;P27708;H7C2E4 F8VPD4 1924 1940 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 8.1723E-11 107.18 By MS/MS By matching By matching 1 1 1 1.0795 1.0059 15.783 3 Plateau 1.0827 1.0457 NaN 1 0 Median 1.0233 0.90731 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84504 0.76303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18770000 8610200 10160000 13290000 5912700 7377500 5338700 2626300 2712300 0 0 0 140830 71151 69680 0 0 0 0 0 0 19974 1057 20829 104490;104491;104492 106086;106087 106086 2 LGGDLGTYVINK EDYDVSFGSGVLTVKLGGDLGTYVINKQTP TVKLGGDLGTYVINKQTPNKQIWLSSPSSG K L G N K Q 0 0 1 1 0 0 0 3 0 1 2 1 0 0 0 0 1 0 1 1 0 0 12 0 1248.6714 C9JAX1;Q16595;A0A2R8Y5A1 C9JAX1 61 72 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes no 2 0.00010895 90.906 By MS/MS By MS/MS 2 2 1.5482 1.2931 34.25 4 Median 1.6056 1.4981 57.394 2 0 Median 1.5482 1.2931 2.9618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38256000 16665000 21591000 26667000 12079000 14588000 11588000 4586000 7002500 0 0 0 0 0 0 0 0 0 0 0 0 19975 685 20830 104493;104494;104495;104496 106088;106089;106090;106091 106089 4 LGGEAHSMVWDPSGER DLSETTIQTPDGEERLGGEAHSMVWDPSGE GGEAHSMVWDPSGERLAVLMKGKPRVQDGK R L G E R L 1 1 0 1 0 0 2 3 1 0 1 0 1 0 1 2 0 1 0 1 0 0 16 0 1726.7733 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 395 410 AAAS Aladin yes no 3 3.7922E-05 62.055 By MS/MS By MS/MS 1 1 0.93643 0.86742 3.1204 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88908 0.88677 NaN 1 0 Median 0.98631 0.84849 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16625000 8495500 8129200 0 0 0 0 0 0 14661000 7451200 7209600 1963900 1044300 919550 0 0 0 0 0 0 19976 4082 20831 104497;104498 106092;106093;106094 106092 3 LGGFDNIESGAVWK YRNLNLFKLFRLVHKLGGFDNIESGAVWKQ KLGGFDNIESGAVWKQVYQDLGIPVLNSAA K L G W K Q 1 0 1 1 0 0 1 3 0 1 1 1 0 1 0 1 0 1 0 1 0 0 14 0 1491.7358 X6RCR8;Q4LE39 X6RCR8 350 363 ARID4B AT-rich interactive domain-containing protein 4B yes no 2 0.00070644 63.283 By MS/MS By matching 2 1 0.91668 0.91129 34.889 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70223 0.73702 46.197 2 0 Median 1.011 0.91129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4037900 2305300 1732600 0 0 0 0 0 0 3876800 2234300 1642500 161120 71016 90107 0 0 0 0 0 0 19977 3024 20832 104499;104500;104501 106095 106095 1 LGGFVMNILSR LLMRTVIQSLTMYPRLGGFVMNILSRLIMK MYPRLGGFVMNILSRLIMKQVWKYPKVWEG R L G S R L 0 1 1 0 0 0 0 2 0 1 2 0 1 1 0 1 0 0 0 1 0 0 11 0 1205.6591 Q92797;M0R033 Q92797 1012 1022 SYMPK Symplekin yes no 2 0.0019387 56.258 By matching By MS/MS By matching By matching 2 1 1 1 1.268 1.0983 19.132 5 Median NaN NaN NaN 0 0 Median 1.5147 1.3387 21.903 2 0 Median 0.97729 1.0748 NaN 1 0 Median 1.268 1.0983 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0817 0.92865 NaN 1 0 Median 12989000 5974400 7014600 0 0 0 3170000 927040 2243000 7935900 4129300 3806600 394080 183110 210970 0 0 0 1489000 734930 754060 19978 3558 20833 104502;104503;104504;104505;104506 106096;106097 106097 2 LGGGLGVAGGNSTR ______________________________ RLGGGLGVAGGNSTRERLLSALEDLEVLSR R L G T R E 1 1 1 0 0 0 0 6 0 0 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1214.6367 Q9NPJ6 Q9NPJ6 14 27 MED4 Mediator of RNA polymerase II transcription subunit 4 yes yes 2 0.0034835 57.019 By MS/MS 1 1.6988 1.4168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6988 1.4168 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3295000 1114900 2180100 0 0 0 0 0 0 0 0 0 3295000 1114900 2180100 0 0 0 0 0 0 19979 4056 20834 104507 106098 106098 1 LGGGMGSMNSVTGGMGMGLDR GDIGINRGFGDSFGRLGGGMGSMNSVTGGM SMNSVTGGMGMGLDRMSSSFDRMGPGIGAI R L G D R M 0 1 1 1 0 0 0 8 0 0 2 0 4 0 0 2 1 0 0 1 0 0 21 0 1983.8635 A0A0A0MQW0;A0A0C4DGV1;H0YN19 A0A0A0MQW0 435 455 MYEF2 yes no 2 0.04933 18.096 By matching By MS/MS 1 1 0.61673 0.63674 17.31 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6804 0.71965 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55902 0.56338 NaN 1 0 Median NaN NaN NaN 0 0 Median 2643900 1332300 1311600 0 0 0 0 0 0 1696500 765270 931250 0 0 0 947420 567080 380350 0 0 0 19980 149 20835 104508;104509 106099 106099 1 LGGHGPSFPLK GKEDGSGDRGDGPFRLGGHGPSFPLKGITE GPFRLGGHGPSFPLKGITEQQKEGLEIVKM R L G L K G 0 0 0 0 0 0 0 3 1 0 2 1 0 1 2 1 0 0 0 0 0 0 11 0 1108.6029 P13010 P13010 185 195 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.00017328 92.439 By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 0.88405 0.79165 3.0722 5 Median 0.88405 0.78272 NaN 1 0 Median 0.89622 0.78319 NaN 1 0 Median 0.75701 0.79527 0.64517 2 0 Median 0.97672 0.84297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122120000 63826000 58292000 29604000 15269000 14335000 9439100 4826000 4613000 26622000 15425000 11197000 56453000 28306000 28147000 0 0 0 0 0 0 19981 1986 20836 104510;104511;104512;104513;104514 106100;106101;106102;106103;106104;106105 106101 6 LGGIAYFLSR RTPLEELCLQIKILRLGGIAYFLSRLMDPP IKILRLGGIAYFLSRLMDPPSNEAVLLSIR R L G S R L 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 1 0 0 1 0 0 0 10 0 1095.6077 Q9H2U1;E7EWK3 Q9H2U1 648 657 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.039547 31.229 By MS/MS 1 0.82743 0.83152 NaN 1 Median 0.82743 0.83152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217200 634300 582860 1217200 634300 582860 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19982 902 20837 104515 106106 106106 1 LGGIGQFLAK RTPLHEIALSIKLLRLGGIGQFLAKAIEPP IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH R L G A K A 1 0 0 0 0 1 0 3 0 1 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1002.5862 Q08211 Q08211 810 819 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00040371 77.282 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 5 6 5 6 4 1.5044 1.3595 11.149 30 Median 1.4547 1.4681 5.8597 4 1 Median 1.6282 1.4265 8.1692 5 0 Median 1.2061 1.2857 14.39 6 0 Median 1.6621 1.5416 7.9047 5 0 Median 1.3485 1.4424 13.874 6 0 Median 1.5725 1.3058 2.478 4 0 Median 424510000 186320000 238190000 28792000 11416000 17376000 32797000 13123000 19674000 166740000 77464000 89275000 5804100 2207200 3596900 176430000 76893000 99535000 13953000 5221100 8732300 19983 2736 20838 104516;104517;104518;104519;104520;104521;104522;104523;104524;104525;104526;104527;104528;104529;104530;104531;104532;104533;104534;104535;104536;104537;104538;104539;104540;104541;104542;104543;104544;104545 106107;106108;106109;106110;106111;106112;106113;106114;106115;106116;106117;106118;106119;106120;106121;106122;106123;106124;106125;106126;106127;106128;106129;106130;106131;106132;106133;106134 106110 28 LGGIPDALPTVAAPR VHGSPTGPGAWTASKLGGIPDALPTVAAPR LGGIPDALPTVAAPRPVCQRCGQPLALVVQ K L G P R P 3 1 0 1 0 0 0 2 0 1 2 0 0 0 3 0 1 0 0 1 0 0 15 0 1446.8195 Q9BRP1 Q9BRP1 32 46 PDCD2L Programmed cell death protein 2-like yes yes 2 0.0012693 41.283 By matching By MS/MS By matching 1 1 1 0.85314 0.93051 23.492 3 Plateau 0.78554 0.79283 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92655 1.0054 NaN 1 0 Median 0.74494 0.6285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5067300 2579100 2488200 1915700 1034100 881580 0 0 0 2917200 1420800 1496400 234460 124180 110280 0 0 0 0 0 0 19984 3797 20839 104546;104547;104548 106135;106136 106135 2 LGGIPVGVVAVETR IMQPWAQTVVVGRARLGGIPVGVVAVETRT RLGGIPVGVVAVETRTVELSIPADPANLDS R L G T R T 1 1 0 0 0 0 1 3 0 1 1 0 0 0 1 0 1 0 0 4 0 0 14 0 1365.798 Q13085;Q59FY4 Q13085 1978 1991 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 6.4816E-06 93.258 By MS/MS By matching 2 1 0.80086 0.77993 19.444 3 Median 0.79199 0.76483 2.7637 2 0 Median 1.2565 1.0693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25309000 13988000 11321000 22473000 12731000 9741600 2835900 1256200 1579700 0 0 0 0 0 0 0 0 0 0 0 0 19985 2784 20840 104549;104550;104551 106137;106138;106139 106138 2 LGGLHFPK DYVLELGHPYLWVQKLGGLHFPKEQPQQTV PYLWVQKLGGLHFPKEQPQQTVIADHSLSA K L G P K E 0 0 0 0 0 0 0 2 1 0 2 1 0 1 1 0 0 0 0 0 0 0 8 0 867.49667 Q13769 Q13769 447 454 THOC5 THO complex subunit 5 homolog yes yes 2 0.013618 52.683 By matching By MS/MS By MS/MS 1 1 1 0.68025 0.70484 53.661 3 Median 0.32329 0.36747 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68025 0.70484 NaN 1 0 Median 1.2279 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11523000 6539300 4983500 2824800 2004700 820130 0 0 0 6751600 3865400 2886200 1946400 669270 1277100 0 0 0 0 0 0 19986 2837 20841 104552;104553;104554 106140;106141;106142 106142 3 LGGLQFDKELR AVELEKVVLKSTFNRLGGLQFDKELRSLIA TFNRLGGLQFDKELRSLIAYLTTVTTWTIR R L G L R S 0 1 0 1 0 1 1 2 0 0 3 1 0 1 0 0 0 0 0 0 0 0 11 1 1274.6983 A0A0A0MS45;J3KNI1;Q9H9E3;H3BQB2 A0A0A0MS45 682 692 COG4 Conserved oligomeric Golgi complex subunit 4 yes no 3 0.066537 23.749 By MS/MS 1 0.87238 0.88722 NaN 1 Median 0.87238 0.88722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1175600 704860 470780 1175600 704860 470780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19987 175 20842 104555 106143 106143 1 LGGLTQAPGNPVLAVQINQDK ITEEAMMDFFNAQMRLGGLTQAPGNPVLAV APGNPVLAVQINQDKNFAFLEFRSVDETTQ R L G D K N 2 0 2 1 0 3 0 3 0 1 3 1 0 0 2 0 1 0 0 2 0 0 21 0 2132.159 P26368;K7ENG2 P26368 175 195 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2;3 6.4314E-23 110.56 By matching By MS/MS By matching By MS/MS By matching 1 6 6 2 1 0.78766 0.71001 22.275 16 Median NaN NaN NaN 0 0 Median 0.82616 0.72988 NaN 1 0 Median 0.76687 0.74998 24.177 6 0 Median 0.83292 0.71361 13.594 6 0 Median 0.58664 0.56092 23.542 2 0 Median 0.6548 0.53628 NaN 1 0 Median 450950000 249970000 200980000 0 0 0 681420 394420 287010 392440000 219350000 173090000 52468000 27452000 25015000 5110800 2641200 2469600 248290 131550 116740 19988 2143 20843 104556;104557;104558;104559;104560;104561;104562;104563;104564;104565;104566;104567;104568;104569;104570;104571 106144;106145;106146;106147;106148;106149;106150;106151;106152;106153;106154;106155;106156;106157 106148 14 LGGNEIVSFLK EVPISFVDRVYGESKLGGNEIVSFLKGLLT GESKLGGNEIVSFLKGLLTLFATT______ K L G L K G 0 0 1 0 0 0 1 2 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1175.655 Q5QPK2;H0Y368;O60762 Q5QPK2 268 278 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2 0.00019545 75.378 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.3533 1.2121 17.461 6 Median 1.0326 0.96402 14.989 2 0 Median 1.5299 1.2965 0.69094 2 0 Median 1.2095 1.1388 NaN 1 0 Median 1.7354 1.404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94192000 41074000 53118000 71340000 31540000 39801000 16494000 6574800 9918900 6188700 2894300 3294400 169250 65181 104070 0 0 0 0 0 0 19989 1142 20844 104572;104573;104574;104575;104576;104577 106158;106159;106160 106160 3 LGGNYGPTVLVQQEALK PAFIRAWVGGVGNYKLGGNYGPTVLVQQEA GNYGPTVLVQQEALKRGCEQVLWLYGPDHQ K L G L K R 1 0 1 0 0 2 1 3 0 0 3 1 0 0 1 0 1 0 1 2 0 0 17 0 1785.9625 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 230 246 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2 5.5781E-05 61.235 By MS/MS 1 0.92117 0.8608 NaN 1 Median 0.92117 0.8608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6662500 3611900 3050600 6662500 3611900 3050600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19990 1543 20845 104578 106161 106161 1 LGGNYGPTVLVQQEALKR PAFIRAWVGGVGNYKLGGNYGPTVLVQQEA NYGPTVLVQQEALKRGCEQVLWLYGPDHQL K L G K R G 1 1 1 0 0 2 1 3 0 0 3 1 0 0 1 0 1 0 1 2 0 0 18 1 1942.0636 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 230 247 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2;3 6.0202E-07 81.317 By MS/MS By matching By matching 2 1 1 0.95424 1.0337 20.765 4 Median 0.80693 0.86474 4.8971 2 0 Median 1.369 1.2706 NaN 1 0 Median 1.0902 1.1936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52629000 30228000 22401000 49900000 29170000 20730000 516590 162760 353830 2212500 895120 1317400 0 0 0 0 0 0 0 0 0 19991 1543 20846 104579;104580;104581;104582 106162;106163;106164;106165 106164 4 LGGPEAGLGEYLFER KLIKKMGDHLTNLHRLGGPEAGLGEYLFER LGGPEAGLGEYLFERLTLKHD_________ R L G E R L 1 1 0 0 0 0 3 4 0 0 3 0 0 1 1 0 0 0 1 0 0 0 15 0 1606.7991 P02792 P02792 155 169 FTL Ferritin light chain yes yes 2 3.976E-05 84.289 By MS/MS By MS/MS 1 1 0.72452 0.65469 74.246 2 Median 1.1243 1.1067 NaN 1 0 Median 0.46688 0.38729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10541000 5687300 4854200 6091100 2723200 3368000 4450300 2964100 1486200 0 0 0 0 0 0 0 0 0 0 0 0 19992 1837 20847 104583;104584 106166;106167;106168 106168 3 LGGSAVISLEGK NCYEEVKDRCTLAEKLGGSAVISLEGKPL_ AEKLGGSAVISLEGKPL_____________ K L G G K P 1 0 0 0 0 0 1 3 0 1 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1129.6343 P23528;G3V1A4;E9PK25 P23528 153 164 CFL1 Cofilin-1 yes no 2 0.00086735 59.908 By MS/MS 1 1.3712 1.1833 NaN 1 Median NaN NaN NaN 0 0 Median 1.3712 1.1833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2231100 970780 1260400 0 0 0 2231100 970780 1260400 0 0 0 0 0 0 0 0 0 0 0 0 19993 2118 20848 104585 106169;106170 106170 2 LGGSAVISLEGKPL NCYEEVKDRCTLAEKLGGSAVISLEGKPL_ KLGGSAVISLEGKPL_______________ K L G P L - 1 0 0 0 0 0 1 3 0 1 3 1 0 0 1 2 0 0 0 1 0 0 14 1 1339.7711 P23528;G3V1A4;E9PK25 P23528 153 166 CFL1 Cofilin-1 yes no 2 2.4368E-05 94.309 By MS/MS By MS/MS By matching By matching By MS/MS By matching 3 4 1 1 1 2 1.0083 0.88256 16.09 12 Median 0.92545 0.86312 17.628 3 0 Median 1.0536 0.88622 12.238 4 0 Median 0.95101 0.90053 NaN 1 0 Median 1.0563 0.87488 NaN 1 0 Median 1.1436 1.2777 NaN 1 0 Median 1.0443 0.85953 4.9757 2 0 Median 99503000 48505000 50998000 14680000 7780900 6898800 67888000 32942000 34946000 4455900 2271200 2184700 2892900 1384800 1508000 8950900 3823000 5127900 635730 303220 332510 19994 2118 20849 104586;104587;104588;104589;104590;104591;104592;104593;104594;104595;104596;104597 106171;106172;106173;106174;106175;106176 106176 6 LGGSLADSYLDEGFLLDK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL SLADSYLDEGFLLDKKIGVNQPKRIENAKI K L G D K K 1 0 0 3 0 0 1 3 0 0 5 1 0 1 0 2 0 0 1 0 0 0 18 0 1911.9466 P78371;F5GWF6;F8VQ14 P78371 205 222 CCT2 T-complex protein 1 subunit beta yes no 2 5.328E-06 68.809 By matching By MS/MS 1 1 1.0553 0.95851 12.545 2 Median 1.0828 1.0474 NaN 1 0 Median 1.0285 0.87715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5444400 2704200 2740200 1727400 792350 935020 3717000 1911900 1805100 0 0 0 0 0 0 0 0 0 0 0 0 19995 2644 20850 104598;104599 106177 106177 1 LGGSLADSYLDEGFLLDKK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL LADSYLDEGFLLDKKIGVNQPKRIENAKIL K L G K K I 1 0 0 3 0 0 1 3 0 0 5 2 0 1 0 2 0 0 1 0 0 0 19 1 2040.0415 P78371;F5GWF6;F8VQ14 P78371 205 223 CCT2 T-complex protein 1 subunit beta yes no 3 2.6903E-08 67.727 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0257 0.99196 16.239 4 Median 1.1242 1.0576 NaN 1 0 Median 1.0494 0.98199 NaN 1 0 Median 0.67614 0.73681 NaN 1 0 Median 1.0025 1.002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23614000 11030000 12584000 8385000 3852700 4532200 14873000 6938100 7934700 159140 106570 52572 197190 132810 64377 0 0 0 0 0 0 19996 2644 20851 104600;104601;104602;104603 106178;106179;106180 106179 3 LGGSPFGPAGTGK TDRCYLTMTQALEARLGGSPFGPAGTGKTE ARLGGSPFGPAGTGKTESVKALGHQLGRFV R L G G K T 1 0 0 0 0 0 0 5 0 0 1 1 0 1 2 1 1 0 0 0 0 0 13 0 1144.5877 Q14204 Q14204 1900 1912 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 2.7161E-22 160.77 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.72552 0.70876 25.797 4 Median NaN NaN NaN 0 0 Median 0.77734 0.69608 NaN 1 1 Median 0.67716 0.72166 NaN 1 0 Median 0.86743 0.869 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54911 0.47038 NaN 1 0 Median 112870000 70977000 41895000 0 0 0 60797000 41431000 19366000 31628000 18599000 13029000 15250000 7926100 7323800 0 0 0 5196900 3020600 2176300 19997 2865 20852 104604;104605;104606;104607 106181;106182;106183;106184;106185;106186;106187 106183 7 LGGSPFGPAGTGKTESVK TDRCYLTMTQALEARLGGSPFGPAGTGKTE SPFGPAGTGKTESVKALGHQLGRFVLVFNC R L G V K A 1 0 0 0 0 0 1 5 0 0 1 2 0 1 2 2 2 0 0 1 0 0 18 1 1688.8733 Q14204 Q14204 1900 1917 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 2.5432E-07 70.335 By MS/MS By MS/MS 1 1 0.55068 0.61214 15.266 2 Median 0.50437 0.5495 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.60124 0.68192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19656000 12608000 7048000 10761000 7301600 3459700 0 0 0 8894600 5306300 3588300 0 0 0 0 0 0 0 0 0 19998 2865 20853 104608;104609 106188;106189 106188 2 LGGSPTSLGTWGSWIGPDHDK VYRLCPFKLVSQKPKLGGSPTSLGTWGSWI SLGTWGSWIGPDHDKFSAMKYEQGTGCWQG K L G D K F 0 0 0 2 0 0 0 5 1 1 2 1 0 0 2 3 2 2 0 0 0 0 21 0 2167.0334 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 446 466 PRKCSH Glucosidase 2 subunit beta yes no 3 9.5368E-05 35.973 By MS/MS By matching 1 1 0.88705 0.80617 8.4792 2 Median 0.79321 0.75926 NaN 1 0 Median 0.99199 0.85598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6300400 3436100 2864300 5029300 2808800 2220400 1271100 627270 643870 0 0 0 0 0 0 0 0 0 0 0 0 19999 1378 20854 104610;104611 106190 106190 1 LGGSPTSLGTWGSWIGPDHDKFSAMK VYRLCPFKLVSQKPKLGGSPTSLGTWGSWI GSWIGPDHDKFSAMKYEQGTGCWQGPNRST K L G M K Y 1 0 0 2 0 0 0 5 1 1 2 2 1 1 2 4 2 2 0 0 0 0 26 1 2731.3064 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 446 471 PRKCSH Glucosidase 2 subunit beta yes no 3;4 1.6138E-08 42.806 By MS/MS By matching 4 1 0.71204 0.74872 16.153 5 Median 0.73548 0.7087 16.592 4 0 Median NaN NaN NaN 0 0 Median 0.6952 0.80304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22816000 13035000 9781600 21818000 12542000 9276500 0 0 0 998300 493190 505120 0 0 0 0 0 0 0 0 0 20000 1378 20855 104612;104613;104614;104615;104616 106191;106192;106193 106191 3 LGGSQEDQIK AYQELVEEAIAYGRKLGGSQEDQIKNAIDK AYGRKLGGSQEDQIKNAIDKLFVLFGAEIL K L G I K N 0 0 0 1 0 2 1 2 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1073.5353 P37837;F2Z393 P37837 72 81 TALDO1 Transaldolase yes no 2 7.8138E-05 133.23 By MS/MS By MS/MS By matching 2 2 1 1.1346 1.0638 10.516 5 Median 1.1131 1.0881 3.2016 2 0 Median 1.2594 1.0672 7.0117 2 0 Median 0.88618 0.86683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14711000 6589000 8121600 3012100 1292600 1719400 11053000 4922200 6131300 645130 374190 270940 0 0 0 0 0 0 0 0 0 20001 2270 20856 104617;104618;104619;104620;104621 106194;106195;106196;106197;106198 106196 5 LGGVSSTEELDIR KAAVEDSGTTVETIKLGGVSSTEELDIRTL IKLGGVSSTEELDIRTLQTKNRKLAEMLDQ K L G I R T 0 1 0 1 0 0 2 2 0 1 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1374.6991 Q5VTR2;C9J0A5;C9JXC9;C9JWJ4 Q5VTR2 37 49 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 2 1.5222E-08 127.42 By matching By MS/MS By MS/MS 1 1 1 1.0777 1.0185 9.2212 3 Median NaN NaN NaN 0 0 Median 1.2677 1.1001 NaN 1 0 Median 0.9265 1.0185 NaN 1 1 Median 1.0777 0.91557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24853000 10772000 14081000 0 0 0 1293100 572850 720250 19116000 8063900 11053000 4443500 2135100 2308300 0 0 0 0 0 0 20002 3112 20857 104622;104623;104624 106199;106200 106199 2 LGGYLAEEQATPENPTIR VANSLAKLSVHALSRLGGYLAEEQATPENP YLAEEQATPENPTIRKSLAGMLTPYVARKL R L G I R K 2 1 1 0 0 1 3 2 0 1 2 0 0 0 2 0 2 0 1 0 0 0 18 0 1957.9745 O75165 O75165 1589 1606 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.0035401 30.059 By MS/MS By matching 1 1 0.71948 0.69152 9.8658 2 Median NaN NaN NaN 0 0 Median 0.76901 0.64492 NaN 1 0 Median 0.67313 0.74148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6972600 3892600 3079900 0 0 0 1742000 840630 901350 5230600 3052000 2178600 0 0 0 0 0 0 0 0 0 20003 1653 20858 104625;104626 106201 106201 1 LGHAEQKDEMVPR SQKRVFSWGFGGYGRLGHAEQKDEMVPRLV GRLGHAEQKDEMVPRLVKLFDFPGRGASQI R L G P R L 1 1 0 1 0 1 2 1 1 0 1 1 1 0 1 0 0 0 0 1 0 0 13 1 1508.7406 Q9P258 Q9P258 362 374 RCC2 Protein RCC2 yes yes 2;3 0.0038155 35.204 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 0.96559 0.92933 12.86 10 Median 0.76666 0.78165 3.2293 2 0 Median 1.0625 0.97572 12.11 2 0 Median 0.92459 0.98944 15.412 4 0 Median 1.0019 0.92933 2.1936 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12004000 6061800 5942200 2402000 1297700 1104300 2506000 1221600 1284300 5638000 2853900 2784100 1458000 688640 769390 0 0 0 0 0 0 20004 4214 20859 104627;104628;104629;104630;104631;104632;104633;104634;104635;104636 106202;106203;106204;106205;106206 106202 5 LGHAETDEQLQNIISK ASQDELNQLERVFLRLGHAETDEQLQNIIS GHAETDEQLQNIISKFLPPVLLKLSSTQEG R L G S K F 1 0 1 1 0 2 2 1 1 2 2 1 0 0 0 1 1 0 0 0 0 0 16 0 1794.9112 Q5VYK3;J3KN16;R4GMY1;R4GMY3 Q5VYK3 23 38 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2;3 4.7924E-07 89.403 By MS/MS By MS/MS 2 2 1.1655 1.0742 17.071 4 Median 0.98264 0.94497 24.783 2 0 Median 1.2252 1.0858 8.1825 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64886000 32527000 32359000 49657000 25523000 24135000 15228000 7004500 8224000 0 0 0 0 0 0 0 0 0 0 0 0 20005 3116 20860 104637;104638;104639;104640 106207;106208;106209;106210;106211;106212 106207 6 LGHELQQAGLK QLQKENKELRAEAERLGHELQQAGLKTKEA EAERLGHELQQAGLKTKEAEQTCRHLTAQV R L G L K T 1 0 0 0 0 2 1 2 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1192.6564 A0A087WY61;K4DIE0;Q14980 Q14980 1655 1665 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 4.1396E-15 189.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 2 4 1.0045 0.93945 17.521 8 Median NaN NaN NaN 0 0 Median 1.1738 1.055 16.211 2 0 Median 0.91559 1.0078 NaN 1 0 Median 1.1345 0.99543 8.3742 2 0 Median 0.88418 0.92693 NaN 1 0 Median 0.86768 0.73383 14.782 2 0 Median 184160000 44893000 139270000 905490 0 905490 14951000 2632600 12318000 63777000 12740000 51037000 10780000 2275300 8505000 64807000 20624000 44183000 28944000 6621500 22322000 20006 2905;77 20861 104641;104642;104643;104644;104645;104646;104647;104648;104649;104650;104651;104652;104653;104654;104655;104656 106213;106214;106215;106216;106217;106218;106219;106220;106221;106222;106223;106224;106225;106226;106227;106228;106229;106230 106216 18 LGHGEEELETEKDFSR EKIMALDIDERHLLRLGHGEEELETEKDFS GHGEEELETEKDFSRYGRVNYVLARRIELL R L G S R Y 0 1 0 1 0 0 5 2 1 0 2 1 0 1 0 1 1 0 0 0 0 0 16 1 1874.8646 O60306 O60306 879 894 AQR Intron-binding protein aquarius yes yes 3;4 3.6755E-05 68.179 By matching By matching By MS/MS By matching 2 2 2 1 1.1125 1.1276 26.649 7 Median 1.159 1.1713 5.3742 2 0 Median 1.1252 1.0759 27.28 2 0 Median 0.74892 0.8485 3.1674 2 0 Median 1.7903 1.7283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29932000 13358000 16574000 10185000 3675700 6509000 2976100 1213000 1763100 14763000 8068200 6694900 2008000 401250 1606800 0 0 0 0 0 0 20007 1611 20862 104657;104658;104659;104660;104661;104662;104663 106231;106232;106233 106231 2 LGHGYHTLEDQALYNR AEVVKEAVDILKTERLGHGYHTLEDQALYN GHGYHTLEDQALYNRLRQENMHFEAQK___ R L G N R L 1 1 1 1 0 1 1 2 2 0 3 0 0 0 0 0 1 0 2 0 0 0 16 0 1885.9071 F5GXW0;P00813;F5GWI4 F5GXW0 236 251 ADA Adenosine deaminase yes no 2;3;4 2.3166E-10 115.78 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.1391 1.1252 16.868 8 Median 0.95504 0.95442 20.153 3 1 Median 1.306 1.1301 3.287 2 0 Median 1.1118 1.1943 7.2308 2 0 Median 1.4497 1.232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41005000 19803000 21202000 28876000 13914000 14962000 3511700 1561800 1949900 8239100 4130300 4108800 378890 197390 181490 0 0 0 0 0 0 20008 1008 20863 104664;104665;104666;104667;104668;104669;104670;104671 106234;106235;106236;106237;106238;106239;106240;106241 106234 8 LGHPEALSAGTGSPQPPSFTYAQQR SPGAPGGSGSQPNQKLGHPEALSAGTGSPQ TGSPQPPSFTYAQQREKPRVQEKQHPVPPP K L G Q R E 3 1 0 0 0 3 1 3 1 0 2 0 0 1 4 3 2 0 1 0 0 0 25 0 2596.267 Q15942;H0Y2Y8;H7C3D3 Q15942 296 320 ZYX Zyxin yes no 3 1.3116E-36 123.12 By MS/MS By MS/MS By MS/MS 2 1 1 0.62932 0.62044 15.971 4 Median 0.55069 0.52422 17.38 2 0 Median NaN NaN NaN 0 0 Median 0.63992 0.65078 NaN 1 0 Median 0.77669 0.6494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34710000 21432000 13277000 20757000 13406000 7351200 0 0 0 12856000 7423100 5432800 1096500 603200 493320 0 0 0 0 0 0 20009 2978 20864 104672;104673;104674;104675 106242;106243;106244;106245;106246 106242 5 LGHTDILVGVK ETDVVSNTSGSARVKLGHTDILVGVKAEMG ARVKLGHTDILVGVKAEMGTPKLEKPNEGY K L G V K A 0 0 0 1 0 0 0 2 1 1 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1150.671 Q15024 Q15024 53 63 EXOSC7 Exosome complex component RRP42 yes yes 2 0.00014953 107.69 By matching By MS/MS By MS/MS 1 1 1 1.2789 1.0778 4.0423 3 Median NaN NaN NaN 0 0 Median 1.2789 1.0778 NaN 1 0 Median 1.085 1.0429 NaN 1 0 Median 1.3395 1.1303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11791000 5448100 6342900 0 0 0 2255500 936420 1319100 7330800 3557500 3773300 2204600 954150 1250500 0 0 0 0 0 0 20010 2916 20865 104676;104677;104678 106247;106248;106249 106249 3 LGHVVMGNNAVSPYQQVIEK NLIRNARLDAKIDSKLGHVVMGNNAVSPYQ MGNNAVSPYQQVIEKTKSLSFRSQMLAMNI K L G E K T 1 0 2 0 0 2 1 2 1 1 1 1 1 0 1 1 0 0 1 4 0 0 20 0 2182.1205 P60228;E5RGA2;H0YAW4 P60228 388 407 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 3 2.5791E-14 104.88 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 0.9907 0.86487 10.906 9 Median 0.89106 0.82358 4.7958 2 0 Median 1.003 0.86902 2.8094 2 0 Median 0.99918 0.96556 23.428 2 0 Median 0.98507 0.88508 3.2662 2 0 Median 1.0324 0.98289 NaN 1 0 Median NaN NaN NaN 0 0 Median 112930000 55459000 57476000 54374000 27339000 27035000 2662300 1318600 1343600 32524000 14985000 17539000 18176000 9256200 8920200 5197700 2559700 2638000 0 0 0 20011 2524 20866;20867 104679;104680;104681;104682;104683;104684;104685;104686;104687 106250;106251;106252;106253;106254;106255;106256;106257;106258;106259;106260 106258 1205 11 LGHYATQLQNTYDR AEHQVGEDGFLLKIKLGHYATQLQNTYDRC KLGHYATQLQNTYDRCPMELVRCIRHILYN K L G D R C 1 1 1 1 0 2 0 1 1 0 2 0 0 0 0 0 2 0 2 0 0 0 14 0 1678.8063 P51692;C9J4I3 P51692 87 100 STAT5B Signal transducer and activator of transcription 5B yes no 3 0.0035587 32.734 By MS/MS By MS/MS 1 1 1.2033 1.1168 2.5928 2 Median 1.1513 1.1375 NaN 1 1 Median 1.2577 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961600 1887100 2074500 2093000 1068700 1024300 1868700 818390 1050300 0 0 0 0 0 0 0 0 0 0 0 0 20012 2441 20868 104688;104689 106261;106262;106263 106262 3 LGIEGLSLHNVLK DVLRNEARVMEGLHRLGIEGLSLHNVLKLN HRLGIEGLSLHNVLKLNIQPSEADYAVDIR R L G L K L 0 0 1 0 0 0 1 2 1 1 4 1 0 0 0 1 0 0 0 1 0 0 13 0 1391.8136 Q9NYU2 Q9NYU2 427 439 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2;3 0.0052389 38.75 By MS/MS By matching 3 3 1.3262 1.2044 21.456 6 Median 1.0716 1.0412 0.43907 3 0 Median 1.842 1.6431 8.7695 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24867000 10238000 14629000 17663000 7801600 9861600 7203400 2436000 4767400 0 0 0 0 0 0 0 0 0 0 0 0 20013 4179 20869 104690;104691;104692;104693;104694;104695 106264;106265;106266 106266 3 LGIHEDSQNR ENYKKFYEQFSKNIKLGIHEDSQNRKKLSE SKNIKLGIHEDSQNRKKLSELLRYYTSASG K L G N R K 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1167.5632 P07900 P07900 447 456 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.00047649 90.657 By MS/MS By MS/MS By matching By MS/MS 5 6 1 1 1.1115 1.0104 22.885 13 Median 1.1145 1.0864 12.085 5 0 Median 1.0909 0.95464 25.826 6 1 Median 1.024 1.0809 NaN 1 0 Median 1.1373 0.96688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62987000 29495000 33492000 13971000 6331600 7639600 48044000 22690000 25354000 503180 242560 260620 468690 230350 238350 0 0 0 0 0 0 20014 1894 20870 104696;104697;104698;104699;104700;104701;104702;104703;104704;104705;104706;104707;104708 106267;106268;106269;106270;106271;106272;106273;106274;106275 106271 9 LGIHEDSQNRK ENYKKFYEQFSKNIKLGIHEDSQNRKKLSE KNIKLGIHEDSQNRKKLSELLRYYTSASGD K L G R K K 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1295.6582 P07900 P07900 447 457 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2;3 0.0002494 61.213 By MS/MS By MS/MS 1 3 1.1314 1.0928 6.285 4 Median 1.2069 1.2267 NaN 1 0 Median 1.1077 1.0747 1.9651 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5838400 2714100 3124300 973950 447000 526950 4864400 2267100 2597300 0 0 0 0 0 0 0 0 0 0 0 0 20015 1894 20871 104709;104710;104711;104712 106276;106277;106278;106279;106280 106278 5 LGIHEDSTNR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE SKNLKLGIHEDSTNRRRLSELLRYHTSQSG K L G N R R 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1140.5523 P08238 P08238 439 448 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 3.44E-07 162.97 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 5 3 2 2 1 1.0782 0.9977 19.43 14 Median 1.1699 1.1066 NaN 1 0 Median 1.1334 0.98843 21.062 5 0 Median 1.0113 1.1237 13.338 3 0 Median 1.1102 0.99552 8.8845 2 0 Median 1.1028 1.1582 44.519 2 0 Median 0.99736 0.91965 NaN 1 0 Median 90527000 40931000 49596000 18358000 8262200 10095000 64716000 29092000 35624000 2990600 1409300 1581300 1158600 500670 657950 2993300 1524500 1468800 311110 142700 168410 20016 1899 20872 104713;104714;104715;104716;104717;104718;104719;104720;104721;104722;104723;104724;104725;104726 106281;106282;106283;106284;106285;106286;106287;106288 106284 8 LGIHEDSTNRR ENYKKFYEAFSKNLKLGIHEDSTNRRRLSE KNLKLGIHEDSTNRRRLSELLRYHTSQSGD K L G R R R 0 2 1 1 0 0 1 1 1 1 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1296.6535 P08238 P08238 439 449 HSP90AB1 Heat shock protein HSP 90-beta yes yes 3 3.8954E-05 81.017 By MS/MS By MS/MS 1 2 1.2036 1.1286 5.7903 3 Median 1.2036 1.2341 NaN 1 0 Median 1.1793 1.1178 1.3479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13025000 5751600 7273800 2836600 1329700 1506900 10189000 4421900 5767000 0 0 0 0 0 0 0 0 0 0 0 0 20017 1899 20873 104727;104728;104729 106289;106290;106291;106292;106293 106291 5 LGIHSALLDEK LQMHQNGDLVEELKKLGIHSALLDEKKDQD ELKKLGIHSALLDEKKDQDSK_________ K L G E K K 1 0 0 1 0 0 1 1 1 1 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1194.6608 Q86SX6 Q86SX6 141 151 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 3 0.0005842 75.695 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2966400 0 2966400 0 0 0 2966400 0 2966400 0 0 0 0 0 0 0 0 0 0 0 0 20018 3264 20874 104730 106294 106294 1 LGIHSALLDEKK LQMHQNGDLVEELKKLGIHSALLDEKKDQD LKKLGIHSALLDEKKDQDSK__________ K L G K K D 1 0 0 1 0 0 1 1 1 1 3 2 0 0 0 1 0 0 0 0 0 0 12 1 1322.7558 Q86SX6 Q86SX6 141 152 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 3 0.00014839 66.393 By MS/MS 1 1.2808 1.1103 NaN 1 Median NaN NaN NaN 0 0 Median 1.2808 1.1103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5962700 2710100 3252500 0 0 0 5962700 2710100 3252500 0 0 0 0 0 0 0 0 0 0 0 0 20019 3264 20875 104731 106295 106295 1 LGIHSALLDEKKDQDSK LQMHQNGDLVEELKKLGIHSALLDEKKDQD IHSALLDEKKDQDSK_______________ K L G S K - 1 0 0 3 0 1 1 1 1 1 3 3 0 0 0 2 0 0 0 0 0 0 17 2 1895.9953 Q86SX6 Q86SX6 141 157 GLRX5 Glutaredoxin-related protein 5, mitochondrial yes yes 3;4 1.0317E-05 55.833 By MS/MS By MS/MS 2 2 1.0492 1.0597 18.474 4 Median 1.0492 1.0597 0.76909 2 1 Median 1.1268 0.89901 27.44 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12335000 6301900 6032700 5692700 2769700 2922900 6641900 3532100 3109700 0 0 0 0 0 0 0 0 0 0 0 0 20020 3264 20876 104732;104733;104734;104735 106296;106297;106298 106297 3 LGIIGVVNR TDAMDVLMGRVIPVKLGIIGVVNRSQLDIN RVIPVKLGIIGVVNRSQLDINNKKSVTDSI K L G N R S 0 1 1 0 0 0 0 2 0 2 1 0 0 0 0 0 0 0 0 2 0 0 9 0 939.58655 O00429;F8VZ52 O00429 239 247 DNM1L Dynamin-1-like protein yes no 2 1.0163E-07 135.87 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 4 1.182 0.99739 49.926 10 Median 1.5815 1.4956 NaN 1 1 Median 1.0725 0.92664 18.142 2 0 Median 1.2006 1.2717 NaN 1 0 Median 1.9376 1.6197 NaN 1 0 Median 4.0282 4.2221 NaN 1 0 Median 1.1101 0.93416 8.4303 4 0 Median 51108000 19234000 31874000 25380000 8614400 16765000 9666300 4491000 5175300 3289200 1476100 1813100 231220 107410 123800 4615900 870630 3745300 7925900 3674500 4251400 20021 1463 20877 104736;104737;104738;104739;104740;104741;104742;104743;104744;104745;104746 106299;106300;106301;106302;106303;106304 106299 6 LGIKPESVQPHRPTTNPNTSK YGQGAGTLNMDRGERLGIKPESVQPHRPTT SVQPHRPTTNPNTSKFAQKYGGAEKCSRCG R L G S K F 0 1 2 0 0 1 1 1 1 1 1 2 0 0 4 2 3 0 0 1 0 0 21 2 2300.2237 Q16527;F8VQR7 Q16527 88 108 CSRP2 Cysteine and glycine-rich protein 2 yes no 4;5 0.00033773 29.444 By matching By MS/MS By matching By MS/MS 1 3 2 3 0.48726 0.45263 25.796 9 Median 0.48726 0.51883 NaN 1 0 Median 0.51591 0.44614 11.058 3 1 Plateau 0.54965 0.61785 25.766 2 0 Median 0.48661 0.40138 22.529 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47107000 31010000 16097000 4915700 3101400 1814300 7331200 4661400 2669800 13057000 8674100 4382500 21803000 14573000 7230000 0 0 0 0 0 0 20022 2984 20878 104747;104748;104749;104750;104751;104752;104753;104754;104755 106305;106306;106307;106308;106309 106306 5 LGILTHLYR YVKQAMFHYFQVPDRLGILTHLYRDFDKCR FQVPDRLGILTHLYRDFDKCRFAGFCRKIA R L G Y R D 0 1 0 0 0 0 0 1 1 1 3 0 0 0 0 0 1 0 1 0 0 0 9 0 1084.6393 H7C3G9;Q9UJ70;C9JEV6;H7C286;E9PPU6;H0YC94 H7C3G9 198 206 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.0036618 63.565 By MS/MS 1 0.91316 0.8524 NaN 1 Median 0.91316 0.8524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7618200 3624300 3994000 7618200 3624300 3994000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20023 1265 20879 104756 106310 106310 1 LGINDIEGQR SGEWIWESLFHPPRKLGINDIEGQRVLQIA HPPRKLGINDIEGQRVLQIAVILRNLSFEE K L G Q R V 0 1 1 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1113.5778 Q68CP9;F8WCU9 Q68CP9 276 285 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.00040842 76.679 By MS/MS By MS/MS 1 2 0.79018 0.86388 30.743 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79018 0.86388 NaN 1 0 Median 0.69975 0.60742 32.608 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10722000 5434400 5287300 0 0 0 0 0 0 9504900 4795700 4709200 1216800 638640 578150 0 0 0 0 0 0 20024 3122 20880 104757;104758;104759 106311;106312;106313 106311 3 LGINSLQELK VLAAKEKHLAEIKRKLGINSLQELKQNIAK EIKRKLGINSLQELKQNIAKGWQDVTATSA K L G L K Q 0 0 1 0 0 1 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1113.6394 H0YC42;E5RFR7;H0YC44;P55327 H0YC42 111 120 TPD52 Tumor protein D52 no no 2 2.0661E-05 146.81 By MS/MS By matching 1 1 1.0994 1.0339 1.4053 2 Median 1.1039 1.0236 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0949 1.0442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23419000 10646000 12772000 22145000 10178000 11967000 0 0 0 1274300 468550 805700 0 0 0 0 0 0 0 0 0 20025 1172;2499 20881 104760;104761 106314;106315 106314 2 LGIQAEPLYR RSIEEACLTLQHLNRLGIQAEPLYRVVSNT QHLNRLGIQAEPLYRVVSNTIEPLTLFHKM R L G Y R V 1 1 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1158.6397 E9PGC8;P78559 E9PGC8 407 416 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 2 0.0010001 69.423 By MS/MS By matching 1 1 1.3707 1.4492 2.5213 2 Median 1.4181 1.4236 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.325 1.4753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6596400 3067300 3529100 4505100 2171100 2334000 0 0 0 2091300 896230 1195100 0 0 0 0 0 0 0 0 0 20026 923 20882 104762;104763 106316 106316 1 LGIQLDFEK EIAKKRLEFENQKTRLGIQLDFEKNQLKED ENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ R L G E K N 0 0 0 1 0 1 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1061.5757 Q14683;G8JLG1 Q14683 817 825 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.014601 44.349 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.116 1.1758 30.827 5 Median 1.3678 1.29 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0341 1.1151 NaN 1 0 Median 1.314 1.1842 NaN 1 0 Median 1.116 1.1758 NaN 1 0 Median 0.69297 0.60309 NaN 1 0 Median 11618000 6476700 5140900 1982300 986540 995760 0 0 0 6182700 3227700 2954900 393610 176190 217420 3012400 2060100 952280 46633 26070 20564 20027 2889 20883 104764;104765;104766;104767;104768 106317;106318 106318 2 LGIQTDDKGHIIVDEFQNTNVK AIGRVPNTKDLSLNKLGIQTDDKGHIIVDE KGHIIVDEFQNTNVKGIYAVGDVCGKALLT K L G V K G 0 0 2 3 0 2 1 2 1 3 1 2 0 1 0 0 2 0 0 2 0 0 22 1 2483.2656 P00390 P00390 347 368 GSR Glutathione reductase, mitochondrial yes yes 3 0.00097523 38.933 By MS/MS 1 1.102 1.0507 NaN 1 Median 1.102 1.0507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15708000 6638600 9069700 15708000 6638600 9069700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20028 1817 20884 104769 106319 106319 1 LGISFQPVFR RELSTDAQWGIRLGKLGISFQPVFRQHFLT IRLGKLGISFQPVFRQHFLTKKDLIKALVE K L G F R Q 0 1 0 0 0 1 0 1 0 1 1 0 0 2 1 1 0 0 0 1 0 0 10 0 1162.6499 P50748 P50748 1414 1423 KNTC1 Kinetochore-associated protein 1 yes yes 2 0.0052688 50.607 By MS/MS By matching By matching By matching 1 2 1 1 1.019 1.0423 23.83 5 Median 0.78549 0.78677 NaN 1 0 Median 0.99083 0.87059 25.462 2 0 Median 1.019 1.1544 NaN 1 0 Median 1.302 1.2512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12791000 6679500 6111700 5042700 2889600 2153000 799240 394150 405090 6681700 3293200 3388500 267490 102480 165010 0 0 0 0 0 0 20029 2420 20885 104770;104771;104772;104773;104774 106320 106320 1 LGISSLIR LFTGSEDLDNVFVTRLGISSLIREAMSAYN DNVFVTRLGISSLIREAMSAYNSHEEGRLV R L G I R E 0 1 0 0 0 0 0 1 0 2 2 0 0 0 0 2 0 0 0 0 0 0 8 0 857.53345 P35573 P35573 571 578 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.0035475 89.55 By MS/MS By matching 2 1 1.0331 1.0123 8.3888 3 Median 1.0176 1.0042 1.1434 2 0 Median 1.3796 1.1604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6516600 3467800 3048700 4611800 2601600 2010200 1904800 866220 1038500 0 0 0 0 0 0 0 0 0 0 0 0 20030 2243 20886 104775;104776;104777 106321;106322 106322 2 LGITHVLNAAEGR VGNASVAQDIPKLQKLGITHVLNAAEGRSF QKLGITHVLNAAEGRSFMHVNTNANFYKDS K L G G R S 2 1 1 0 0 0 1 2 1 1 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1349.7415 P51452;K7ES89 P51452 54 66 DUSP3 Dual specificity protein phosphatase 3 yes no 2;3 1.8535E-06 127.51 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 1.2571 1.1987 23.951 9 Median 1.5111 1.4333 24.332 4 0 Median 1.1984 0.99382 5.1556 2 0 Median 1.3316 1.2771 4.1893 2 0 Median 1.1055 0.91537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120270000 49572000 70701000 92933000 37890000 55042000 13363000 5831100 7531600 11798000 4873900 6924000 2179500 976350 1203200 0 0 0 0 0 0 20031 2432 20887 104778;104779;104780;104781;104782;104783;104784;104785;104786 106323;106324;106325;106326;106327;106328;106329;106330;106331;106332;106333;106334 106326 12 LGITQLR TLGHLMGVLREFFTKLGITQLRFKPAYNPY VLREFFTKLGITQLRFKPAYNPYTEPSMEV K L G L R F 0 1 0 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 799.49159 Q9Y285;K7ER00;K7EPH2 Q9Y285 398 404 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.003648 103.29 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3368 1.2201 10.719 5 Median 1.2645 1.2201 NaN 1 0 Median 1.4029 1.2123 16.485 2 0 Median 1.3368 1.4065 NaN 1 0 Median 1.378 1.1893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13527000 5667000 7859600 6296000 2691400 3604600 3926900 1573100 2353800 2019500 935350 1084200 1284200 467150 817010 0 0 0 0 0 0 20032 4379 20888 104787;104788;104789;104790;104791 106335;106336;106337;106338;106339;106340 106336 6 LGIWGEGTPFR ATGASEPRNMAYMNRLGIWGEGTPFREFSD YMNRLGIWGEGTPFREFSDFIQAVERRGVG R L G F R E 0 1 0 0 0 0 1 3 0 1 1 0 0 1 1 0 1 1 0 0 0 0 11 0 1231.635 A3KN83;K7ES28;Q9Y2G9 A3KN83 491 501 SBNO1;SBNO2 Protein strawberry notch homolog 1;Protein strawberry notch homolog 2 yes no 2 0.037765 28.727 By MS/MS 2 0.60742 0.63887 121.12 2 Median 0.60742 0.63887 121.12 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2481500 931500 1550000 2481500 931500 1550000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20033 501 20889 104792;104793 106341 106341 1 LGIYTVLFER LSAGLLRQATYTTTRLGIYTVLFERLTGAD YTTTRLGIYTVLFERLTGADGTPPGFLLKA R L G E R L 0 1 0 0 0 0 1 1 0 1 2 0 0 1 0 0 1 0 1 1 0 0 10 0 1209.6758 I3L1P8;Q02978 I3L1P8 88 97 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.024076 35.944 By MS/MS By matching By matching 1 1 1 1.6952 1.4828 4.7896 3 Median 1.5861 1.4828 NaN 1 0 Median 1.6952 1.5206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7074 1.3861 NaN 1 0 Median 11595000 4428000 7167100 9985700 3815500 6170100 76670 28101 48569 0 0 0 0 0 0 0 0 0 1532800 584400 948370 20034 1277 20890 104794;104795;104796 106342 106342 1 LGKDAVEDLESVGK KGLDGAKKAVGGLGKLGKDAVEDLESVGKG KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ K L G G K G 1 0 0 2 0 0 2 2 0 0 2 2 0 0 0 1 0 0 0 2 0 0 14 1 1458.7566 P81605 P81605 83 96 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 2.4788E-34 176.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 1 5 3 3 0.08313 0.088394 169.7 19 Median 0.064616 0.060829 245.18 8 8 Median 0.98977 0.94514 NaN 1 1 Median 0.10227 0.1038 63.746 5 5 Median 0.093511 0.088819 167.18 2 2 Median 0.067268 0.071738 17.665 3 3 Median NaN NaN NaN 0 0 Median 518060000 353450000 164600000 386060000 230250000 155800000 12024000 10401000 1623200 53925000 50814000 3110900 18345000 15881000 2463700 47707000 46106000 1601900 0 0 0 20035 2650 20891 104797;104798;104799;104800;104801;104802;104803;104804;104805;104806;104807;104808;104809;104810;104811;104812;104813;104814;104815;104816 106343;106344;106345;106346;106347;106348;106349;106350;106351;106352;106353;106354;106355;106356;106357;106358;106359;106360;106361;106362 106345 20 LGKDPNTYFIVGTAMVYPEEAEPK QFLQNEYALSLVSCKLGKDPNTYFIVGTAM IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ K L G P K Q 2 0 1 1 0 0 3 2 0 1 1 2 1 1 3 0 2 0 2 2 0 0 24 1 2668.3095 Q16531;F5GY55;F5H198 Q16531 821 844 DDB1 DNA damage-binding protein 1 yes no 3 8.5724E-12 52.321 By matching By MS/MS 3 2 0.55059 0.56588 23.238 5 Median 0.61378 0.65038 12.294 3 0 Median NaN NaN NaN 0 0 Median 0.39697 0.45679 21.262 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18416000 12226000 6189800 7233100 4324900 2908200 0 0 0 11183000 7901000 3281600 0 0 0 0 0 0 0 0 0 20036 2985 20892 104817;104818;104819;104820;104821 106363;106364 106364 2 LGKPGLGGSSGLAGAWLK GLAVKEWLLAHEGHRLGKPGLGGSSGLAGA PGLGGSSGLAGAWLKGAGATSGSPPAGRN_ R L G L K G 2 0 0 0 0 0 0 6 0 0 4 2 0 0 1 2 0 1 0 0 0 0 18 1 1667.9359 B4DEE8;P16455 B4DEE8 207 224 MGMT Methylated-DNA--protein-cysteine methyltransferase yes no 2;3 5.6572E-06 84.173 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.1518 1.1928 23.81 7 Median 0.81903 0.83266 NaN 1 0 Median 1.454 1.3348 NaN 1 0 Median 0.8013 0.79608 3.7971 2 0 Median 1.4055 1.2644 NaN 1 0 Median 1.1518 1.2263 NaN 1 0 Median 1.3744 1.1928 NaN 1 0 Median 79631000 42573000 37058000 10860000 6527400 4332600 659630 280500 379130 61787000 32854000 28933000 1159200 440580 718600 4575300 2228200 2347100 590620 242960 347660 20037 589 20893 104822;104823;104824;104825;104826;104827;104828 106365;106366;106367;106368;106369;106370 106370 6 LGLAEPDMLR ______________________________ RLAPRLGLAEPDMLRKAEEYLRLSRVKCVG R L G L R K 1 1 0 1 0 0 1 1 0 0 3 0 1 0 1 0 0 0 0 0 0 0 10 0 1113.5852 Q9Y5N6;H3BMA4;H3BTQ7 Q9Y5N6 13 22 ORC6 Origin recognition complex subunit 6 yes no 2 0.007999 60.436 By MS/MS 1 0.97844 0.93964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97844 0.93964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7058900 3244700 3814200 0 0 0 0 0 0 7058900 3244700 3814200 0 0 0 0 0 0 0 0 0 20038 4464 20894 104829 106371 106371 1 LGLAPQIQDLYGK RCIYCIHALSLYLFKLGLAPQIQDLYGKVD FKLGLAPQIQDLYGKVDFTEEEINNMKTEL K L G G K V 1 0 0 1 0 2 0 2 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1414.782 P46940;A0A0J9YXZ5;H0YKA5 P46940 162 174 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.8978E-05 88.681 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 0.89315 0.82755 24.522 8 Median 0.91931 0.89708 5.8151 2 0 Median 0.89821 0.79545 6.0012 3 0 Plateau 1.1911 1.3277 NaN 1 0 Median 0.97287 0.88277 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6524 0.56672 NaN 1 0 Median 57389000 28349000 29040000 34172000 16917000 17255000 19632000 9636500 9995100 2786400 1413100 1373300 650090 314500 335600 0 0 0 148540 67670 80871 20039 2350 20895 104830;104831;104832;104833;104834;104835;104836;104837 106372;106373;106374;106375 106373 4 LGLDFPNLPYLIDGTHK APDYDRSQWLNEKFKLGLDFPNLPYLIDGT LDFPNLPYLIDGTHKITQSNAILRYIARKH K L G H K I 0 0 1 2 0 0 0 2 1 1 4 1 0 1 2 0 1 0 1 0 0 0 17 0 1912.0094 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7 E9PHN7 53 69 GSTM2 Glutathione S-transferase Mu 2 yes no 2 0.044959 21.873 By MS/MS 1 0.60978 0.56746 NaN 1 Median 0.60978 0.56746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4716800 2914200 1802600 4716800 2914200 1802600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20040 935 20896 104838 106376 106376 1 LGLDILEVVPISK VVDGGFVKQLNHNPRLGLDILEVVPISKSE PRLGLDILEVVPISKSEALQRSGRAGRTSS R L G S K S 0 0 0 1 0 0 1 1 0 2 3 1 0 0 1 1 0 0 0 2 0 0 13 0 1394.8385 Q8IX18;F5H625 Q8IX18 375 387 DHX40 Probable ATP-dependent RNA helicase DHX40 yes no 2 0.0040594 42.001 By matching By MS/MS By matching 1 2 2 0.82992 0.84498 15.735 5 Median 0.82992 0.84498 NaN 1 0 Median 1.1683 1.0445 12.411 2 0 Median 0.76122 0.7963 7.3247 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4658000 2302300 2355700 648290 373150 275140 3474900 1639000 1835900 534790 290100 244690 0 0 0 0 0 0 0 0 0 20041 3332 20897 104839;104840;104841;104842;104843 106377;106378 106377 2 LGLDYEER LSRPNAQELPSMYQRLGLDYEERVLPSIVN LPSMYQRLGLDYEERVLPSIVNEVLKSVVA R L G E R V 0 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 993.47673 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6 J3KPX7 124 131 PHB2 Prohibitin-2 yes no 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1.6414 1.3788 20.759 7 Median 1.0729 1.0023 NaN 1 0 Median 1.5874 1.3195 NaN 1 0 Median 1.1922 1.161 NaN 1 0 Median 1.693 1.4125 NaN 1 0 Median 1.6414 1.7466 NaN 1 0 Median 1.9326 1.5722 18.565 2 0 Median 204120000 82542000 121580000 45936000 21662000 24274000 123530000 47468000 76065000 13441000 6145300 7296100 11298000 3848400 7449800 3415400 1141200 2274200 6500100 2276900 4223200 20042 1313 20898 104844;104845;104846;104847;104848;104849;104850 106379;106380;106381;106382;106383;106384;106385;106386;106387;106388;106389 106379 11 LGLEALAANHQQLFTDGR ALETERVRANARALRLGLEALAANHQQLFT EALAANHQQLFTDGRSWGSFTVLDNSAWYQ R L G G R S 3 1 1 1 0 2 1 2 1 0 4 0 0 1 0 0 1 0 0 0 0 0 18 0 1953.0068 Q9Y2Z4;H0YHS6 Q9Y2Z4 146 163 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 3 8.3117E-12 105.39 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.5186 1.3049 31.725 5 Median 0.92013 0.88856 NaN 1 0 Median 1.6293 1.4117 NaN 1 0 Median 1.4904 1.5278 44.608 2 0 Median 1.5186 1.3049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76794000 32268000 44525000 7991500 4125400 3866100 1734900 728700 1006200 31258000 13848000 17410000 35809000 13566000 22243000 0 0 0 0 0 0 20043 4399 20899 104851;104852;104853;104854;104855 106390;106391;106392;106393;106394;106395 106394 6 LGLEFFDQPAVPLAR YRSIYFSSPKGHLTRLGLEFFDQPAVPLAR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT R L G A R A 2 1 0 1 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 1 0 0 15 0 1671.8984 P29372;A2IDA3 P29372 86 100 MPG DNA-3-methyladenine glycosylase yes no 2 0.00026639 70.17 By MS/MS 1 0.83732 0.69836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83732 0.69836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3747800 1943400 1804400 0 0 0 0 0 0 0 0 0 3747800 1943400 1804400 0 0 0 0 0 0 20044 2170 20900 104856 106396;106397 106396 2 LGLENAEALIR CFGSEGGTYYIKEQKLGLENAEALIRLIED KEQKLGLENAEALIRLIEDGRGCEVIQEIK K L G I R L 2 1 1 0 0 0 2 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1197.6717 P10155 P10155 53 63 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 0.0001677 80.239 By MS/MS By matching By MS/MS By matching By matching 2 2 1 2 1 1.1239 1.0073 26.612 8 Median 0.94161 0.91744 12.928 2 0 Median 1.253 1.0678 7.9542 2 0 Median 0.88296 0.91262 NaN 1 0 Median 1.6847 1.4422 44.982 2 0 Median NaN NaN NaN 0 0 Median 1.0533 0.93056 NaN 1 0 Median 27621000 13277000 14344000 10766000 5460300 5306000 11282000 5145600 6136700 4613200 2303100 2310100 764240 288120 476120 0 0 0 194620 79493 115130 20045 1934 20901 104857;104858;104859;104860;104861;104862;104863;104864 106398;106399;106400;106401;106402 106398 5 LGLGEGAEEK SEGKAYSLGRAEYGRLGLGEGAEEKSIPTL AEYGRLGLGEGAEEKSIPTLISRLPAVSSV R L G E K S 1 0 0 0 0 0 3 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1001.5029 P18754;C9JW69 P18754 326 335 RCC1 Regulator of chromosome condensation yes no 2 1.1042E-06 149.94 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 3 1.2139 1.0855 34.642 9 Median NaN NaN NaN 0 0 Median 3.1954 2.8763 NaN 1 0 Median 1.3273 1.3462 4.4805 2 1 Median 1.1802 1.0196 8.8606 2 0 Median 0.96701 0.97239 3.1519 2 0 Median 1.349 1.1105 9.7707 2 0 Median 163990000 73204000 90787000 0 0 0 341580 129750 211840 6363400 2924200 3439200 91040000 40046000 50994000 48483000 22256000 26227000 17763000 7847800 9915300 20046 2061 20902 104865;104866;104867;104868;104869;104870;104871;104872;104873;104874;104875 106403;106404;106405;106406;106407;106408;106409;106410;106411;106412;106413;106414;106415;106416 106403 14 LGLGGNAPVSIPQQSQSVK VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS GNAPVSIPQQSQSVKQLLPSGNGRSYGLGS R L G V K Q 1 0 1 0 0 3 0 3 0 1 2 1 0 0 2 3 0 0 0 2 0 0 19 0 1879.0163 Q9H2P0;A0A2R8Y6X0 Q9H2P0 349 367 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 9.3509E-08 76.728 By MS/MS By matching By MS/MS By matching 3 2 4 1 0.67828 0.68851 13.925 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70039 0.75115 13.039 3 0 Median 0.84891 0.71618 3.9398 2 0 Median 0.64036 0.69497 11.558 4 0 Linear 0.88309 0.76073 NaN 1 0 Median 60021000 35384000 24637000 0 0 0 0 0 0 18129000 10553000 7575300 1522400 720320 802050 39875000 23863000 16012000 494260 247120 247140 20047 3946 20903 104876;104877;104878;104879;104880;104881;104882;104883;104884;104885 106417;106418;106419;106420;106421;106422;106423 106421 7 LGLGISSGTVPIPR VEGKVYACGEATNGRLGLGISSGTVPIPRQ RLGLGISSGTVPIPRQITALSSYVVKKVAV R L G P R Q 0 1 0 0 0 0 0 3 0 2 2 0 0 0 2 2 1 0 0 1 0 0 14 0 1365.798 O95714;A0A3B3IRP6;A0A0J9YVP0 O95714 3024 3037 HERC2 E3 ubiquitin-protein ligase HERC2 yes no 2 3.6411E-07 115.78 By MS/MS By matching By matching 1 1 1 0.80323 0.80502 25.888 3 Median 0.80323 0.80502 NaN 1 0 Median 0.69005 0.59388 NaN 1 0 Median 0.88394 0.99387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7065700 3585700 3479900 4892900 2598400 2294500 767560 399850 367700 1405200 587430 817760 0 0 0 0 0 0 0 0 0 20048 1786 20904 104886;104887;104888 106424;106425 106424 2 LGLGTAYIHGMK IYGSDRILLRPREKKLGLGTAYIHGMKHAT EKKLGLGTAYIHGMKHATGNYIIIMDADLS K L G M K H 1 0 0 0 0 0 0 3 1 1 2 1 1 0 0 0 1 0 1 0 0 0 12 0 1259.6696 Q5QPK2;H0Y368;O60762;Q5QPJ9 Q5QPK2 96 107 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2;3 0.00016582 68.536 By MS/MS By MS/MS By matching 1 2 1 1.4661 1.2973 30.791 4 Median 1.2386 1.1493 NaN 1 0 Median 1.4295 1.2061 27.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8413 2.0084 NaN 1 0 Median NaN NaN NaN 0 0 Median 30748000 13228000 17520000 20911000 9900900 11010000 6570500 2413400 4157100 0 0 0 0 0 0 3266900 914070 2352900 0 0 0 20049 1142 20905 104889;104890;104891;104892 106426;106427;106428;106429 106426 4 LGLHQQGSEPSYLDR AEHGDEPRHGGLTLRLGLHQQGSEPSYLDR LGLHQQGSEPSYLDRTEQLQAVLCSTMEKS R L G D R T 0 1 0 1 0 2 1 2 1 0 3 0 0 0 1 2 0 0 1 0 0 0 15 0 1698.8325 U3KQC1;A0A0A0MQU0;Q9BV38 U3KQC1 323 337 WDR18 WD repeat-containing protein 18 yes no 2;3 4.4759E-10 140.39 By matching By MS/MS By MS/MS By matching By matching 1 4 2 1 1 0.92608 0.85819 16.254 9 Median NaN NaN NaN 0 0 Median 0.99374 0.85819 NaN 1 0 Median 0.93308 0.97856 15.601 4 0 Median 1.0345 0.89059 25.908 2 0 Median 0.73751 0.78038 NaN 1 0 Median 0.8774 0.75247 NaN 1 0 Median 141750000 75095000 66657000 0 0 0 3087700 1453500 1634200 97662000 51678000 45983000 35880000 19093000 16786000 3782100 2075600 1706500 1341200 794530 546640 20050 147 20906 104893;104894;104895;104896;104897;104898;104899;104900;104901 106430;106431;106432;106433;106434;106435;106436;106437;106438;106439;106440;106441 106439 12 LGLHQVLQDLR EELDFRVHIRSELMRLGLHQVLQDLREIEN ELMRLGLHQVLQDLREIENEDMRVQLNVFD R L G L R E 0 1 0 1 0 2 0 1 1 0 4 0 0 0 0 0 0 0 0 1 0 0 11 0 1290.7408 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 341 351 DIAPH1 Protein diaphanous homolog 1 yes no 2;3 0.00014769 116.3 By MS/MS By matching By matching 2 1 1 1.2517 1.1403 38.751 4 Median 0.86934 0.82846 40.955 2 0 Median 1.3605 1.1748 NaN 1 0 Median 1.4388 1.5628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13701000 6207400 7494000 10691000 4881200 5809700 1514200 644580 869600 1496300 681580 814710 0 0 0 0 0 0 0 0 0 20051 274 20907 104902;104903;104904;104905 106442;106443;106444 106443 3 LGLHSLR QDLPNAMNAAEITDKLGLHSLRHRNWYIQA NAAEITDKLGLHSLRHRNWYIQATCATSGD K L G L R H 0 1 0 0 0 0 0 1 1 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 794.47627 P84077;P61204;H0YGG7 P84077 143 149 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 0.023882 70.912 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19367000 0 19367000 0 0 0 11933000 0 11933000 7435000 0 7435000 0 0 0 0 0 0 0 0 0 20052 2549 20908 104906;104907 106445;106446 106446 2 LGLHVTPSNVDQVSTPPAAK AGTRLQAFFHIQAQKLGLHVTPSNVDQVST TPSNVDQVSTPPAAKKSRI___________ K L G A K K 2 0 1 1 0 1 0 1 1 0 2 1 0 0 3 2 2 0 0 3 0 0 20 0 2030.0797 Q9NRL2 Q9NRL2 1533 1552 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 4.6265E-09 79.511 By MS/MS By matching 1 1 0.72407 0.72322 12.472 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60203 0.66217 NaN 1 0 Median 0.87086 0.7899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32894000 19772000 13122000 0 0 0 0 0 0 31208000 18811000 12397000 1686700 961650 725050 0 0 0 0 0 0 20053 4084 20909 104908;104909 106447 106447 1 LGLIPIHADPR YNNTSIVQDEILAHRLGLIPIHADPRLFEY LAHRLGLIPIHADPRLFEYRNQGDEEGTEI R L G P R L 1 1 0 1 0 0 0 1 1 2 2 0 0 0 2 0 0 0 0 0 0 0 11 0 1200.6979 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8YEY5;A0A2R8Y8D6;H0Y723;D6RDJ3 O15160 110 120 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 3 0.0023376 40.154 By matching By MS/MS By matching 1 1 1 1.06 0.9501 8.714 3 Median NaN NaN NaN 0 0 Median 1.06 0.9501 NaN 1 0 Median 0.7764 0.84776 NaN 1 0 Median 1.1859 1.006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16230000 9099900 7129600 0 0 0 148810 74022 74791 15715000 8867000 6848300 365410 158960 206450 0 0 0 0 0 0 20054 1528 20910 104910;104911;104912 106448;106449 106448 2 LGLIPLISDDIVDK DANSSVLHDEFIAHRLGLIPLISDDIVDKL RLGLIPLISDDIVDKLQYSRDCTCEEFCPE R L G D K L 0 0 0 3 0 0 0 1 0 3 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1509.8654 P19387 P19387 68 81 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 2 0.00039186 71.555 By MS/MS By MS/MS By matching 1 1 1 1.0952 0.98065 20.637 3 Plateau NaN NaN NaN 0 0 Median 1.1776 0.98944 NaN 1 0 Median 0.9349 0.89449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8073 0.6652 NaN 1 0 Median 9702600 4495200 5207400 0 0 0 7057100 3165000 3892100 2594000 1303900 1290100 0 0 0 0 0 0 51465 26201 25264 20055 2065 20911 104913;104914;104915 106450;106451;106452 106452 3 LGLKPLEVNAIKK ASSLSIEETNKLRAKLGLKPLEVNAIKKEA AKLGLKPLEVNAIKKEAGTKEEPVTADVIN K L G K K E 1 0 1 0 0 0 1 1 0 1 3 3 0 0 1 0 0 0 0 1 0 0 13 2 1421.897 O43290;E9PQI8 O43290 130 142 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 3 0.00038528 58.098 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.92893 1.169 12.896 6 Linear 0.83407 0.87432 NaN 1 0 Median 1.0539 1.0009 NaN 1 0 Median 0.90893 1.1088 NaN 1 0 Median 1.0566 1.0821 NaN 1 0 Median 0.94938 1.0584 NaN 1 0 Median 0.74084 0.80495 NaN 1 0 Median 18351000 9699500 8651500 2572300 1195500 1376700 747160 395630 351530 7876900 4411800 3465000 3693900 1910400 1783500 2953900 1511100 1442900 506900 275020 231880 20056 1563 20912 104916;104917;104918;104919;104920;104921 106453;106454;106455;106456 106455 4 LGLKSLVSK AAAGYDVEKNNSRIKLGLKSLVSKGTLVQT NNSRIKLGLKSLVSKGTLVQTKGTGASGSF K L G S K G 0 0 0 0 0 0 0 1 0 0 3 2 0 0 0 2 0 0 0 1 0 0 9 1 943.60662 P10412;P16401;P16402;P16403 P16402 83 91 HIST1H1E;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.5;Histone H1.3;Histone H1.2 no no 2 0.0099042 74.376 By MS/MS By matching 1 1 1.1096 1.0515 2.4316 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97493 1.0336 NaN 1 0 Median 1.2628 1.0698 NaN 1 0 Median 30238000 15100000 15138000 0 0 0 0 0 0 0 0 0 0 0 0 19730000 10465000 9264700 10509000 4635400 5873400 20057 2028;1937;2029 20913 104922;104923 106457;106458 106458 2 LGLLDNHSSEFNVTR VPKHVMDVVDEELSKLGLLDNHSSEFNVTR LGLLDNHSSEFNVTRNYLDWLTSIPWGKYS K L G T R N 0 1 2 1 0 0 1 1 1 0 3 0 0 1 0 2 1 0 0 1 0 0 15 0 1700.8482 K7EKE6;P36776;K7EJE8;K7ER27;K7ER56 K7EKE6 331 345 LONP1 Lon protease homolog, mitochondrial yes no 2;3 1.513E-07 132.76 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 1.261 1.1684 35.995 8 Median 0.72369 0.69721 7.6936 2 0 Median 1.5222 1.3059 30.728 4 0 Median 1.1789 1.2493 NaN 1 0 Median 1.4123 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54695000 25739000 28955000 26241000 13920000 12321000 8310100 3552000 4758000 17139000 7075400 10064000 3003800 1191500 1812200 0 0 0 0 0 0 20058 1370 20914 104924;104925;104926;104927;104928;104929;104930;104931 106459;106460;106461;106462;106463;106464 106460 6 LGLLDTQTSQVLTAVDK DPVHGVHLPQAAACRLGLLDTQTSQVLTAV LLDTQTSQVLTAVDKDNKFFFDPSARDQVT R L G D K D 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 3 0 0 2 0 0 17 0 1800.9833 P58107;A0A075B730 P58107 1382 1398 EPPK1 Epiplakin yes no 2 1.3712E-13 149.26 By MS/MS By MS/MS 1 2 1.3395 1.2065 11.269 3 Median 1.3395 1.3303 NaN 1 0 Median 1.3016 1.1322 8.984 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8556200 3609800 4946400 4441200 1936600 2504600 4115000 1673200 2441700 0 0 0 0 0 0 0 0 0 0 0 0 20059 2520 20915 104932;104933;104934 106465;106466;106467 106467 3 LGLLDTQTSQVLTAVDKDNK DPVHGVHLPQAAACRLGLLDTQTSQVLTAV TQTSQVLTAVDKDNKFFFDPSARDQVTYQQ R L G N K F 1 0 1 3 0 2 0 1 0 0 4 2 0 0 0 1 3 0 0 2 0 0 20 1 2158.1481 P58107;A0A075B730 P58107 1382 1401 EPPK1 Epiplakin yes no 3 1.2318E-19 153.21 By MS/MS By MS/MS 2 1 1.2238 1.3319 9.2307 3 Median 1.2862 1.332 0.011971 2 0 Median 1.1867 1.1352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55179000 23872000 31306000 31940000 13050000 18890000 23239000 10822000 12417000 0 0 0 0 0 0 0 0 0 0 0 0 20060 2520 20916 104935;104936;104937 106468;106469;106470;106471;106472 106469 5 LGLLGALMAEDGVR PCCRFDSPRGPPPPRLGLLGALMAEDGVRG RLGLLGALMAEDGVRGSPPVPSGPPMEEDG R L G V R G 2 1 0 1 0 0 1 3 0 0 4 0 1 0 0 0 0 0 0 1 0 0 14 0 1413.765 Q9H4L4;A0A087X0R7 Q9H4L4 197 210 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 yes no 2 0.0065682 52.79 By MS/MS 1 0.95541 1.0062 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95541 1.0062 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1451200 784840 666380 0 0 0 0 0 0 1451200 784840 666380 0 0 0 0 0 0 0 0 0 20061 3966 20917 104938 106473 106473 1 LGLLGLANSLAIEGR GIYGNFGQANYSAAKLGLLGLANSLAIEGR LGLLGLANSLAIEGRKSNIHCNTIAPNAGS K L G G R K 2 1 1 0 0 0 1 3 0 1 5 0 0 0 0 1 0 0 0 0 0 0 15 0 1495.8722 A0A2R8YD50;P51659;E7EWE5;E7ER27;G5E9S2;E7ET17;A0A2R8Y7L2;A0A2R8Y7W2 A0A2R8YD50 169 183 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.00013168 78.653 By MS/MS By MS/MS By MS/MS By matching By matching 2 8 1 2 1 1.2804 1.1144 50.293 14 Median 1.229 1.2063 10.788 2 0 Median 1.2353 1.0615 47.846 8 0 Median 1.1101 1.078 NaN 1 0 Median 1.795 1.5135 21.557 2 0 Median NaN NaN NaN 0 0 Median 3.8152 2.989 NaN 1 0 Median 61415000 25614000 35802000 5554800 2493100 3061700 51511000 21548000 29963000 1922800 943840 978990 452500 165290 287210 0 0 0 1974500 463710 1510800 20062 393 20918 104939;104940;104941;104942;104943;104944;104945;104946;104947;104948;104949;104950;104951;104952 106474;106475;106476;106477;106478;106479;106480;106481;106482 106477 9 LGLLGLPAPK SYVKQMERESREHLRLGLLGLPAPKNDFEI REHLRLGLLGLPAPKNDFEIVLPENAEKEL R L G P K N 1 0 0 0 0 0 0 2 0 0 4 1 0 0 2 0 0 0 0 0 0 0 10 0 977.62735 Q99459 Q99459 478 487 CDC5L Cell division cycle 5-like protein yes yes 2 0.0016668 63.48 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 3 1 3 2 0.90925 0.82354 13.041 12 Median 0.72394 0.72176 NaN 1 0 Median 0.98673 0.8864 5.8727 2 0 Median 0.72461 0.78854 23.114 3 0 Median 1.0934 0.96321 NaN 1 0 Median 0.89029 0.89101 8.88 3 0 Median 0.91145 0.78494 2.2591 2 0 Median 31373000 17379000 13994000 2068900 1300900 767990 734100 300120 433990 17817000 10152000 7665600 269490 126130 143360 10034000 5276900 4756800 449390 223110 226280 20063 3745 20919 104953;104954;104955;104956;104957;104958;104959;104960;104961;104962;104963;104964 106483;106484;106485;106486;106487;106488;106489 106487 7 LGLLMGTGAQGLR DPYLRSLELLEKWTRLGLLMGTGAQGLREE TRLGLLMGTGAQGLREEVHTMLRGVLFFST R L G L R E 1 1 0 0 0 1 0 4 0 0 4 0 1 0 0 0 1 0 0 0 0 0 13 0 1285.7176 Q9UJX6 Q9UJX6 138 150 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2 0.0034196 44.309 By MS/MS By matching 1 1 0.89966 0.86435 6.528 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84479 0.90518 NaN 1 0 Median 0.95809 0.82536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3959100 2082500 1876500 0 0 0 0 0 0 2573400 1429500 1143900 1385600 652980 732650 0 0 0 0 0 0 20064 4303 20920 104965;104966 106490 106490 1 LGLPGDEVDNK RAPLKSVGPDFGKKRLGLPGDEVDNKVKGA GKKRLGLPGDEVDNKVKGAAGRTDLLRLRR R L G N K V 0 0 1 2 0 0 1 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1155.5772 P78527 P78527 2705 2715 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00014747 90.135 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 0.70401 0.72724 37.245 6 Median 0.50199 0.51693 39.189 2 1 Median NaN NaN NaN 0 0 Median 0.72904 0.77549 NaN 1 0 Median 1.1114 1.0554 13.8 2 0 Median 0.64029 0.66996 NaN 1 1 Median NaN NaN NaN 0 0 Median 106060000 58079000 47977000 22558000 13250000 9307700 0 0 0 57582000 32063000 25519000 18462000 8269300 10193000 7454000 4496800 2957200 0 0 0 20065 2647 20921 104967;104968;104969;104970;104971;104972 106491;106492;106493;106494;106495;106496;106497;106498;106499 106492 9 LGLPGDEVDNKVK RAPLKSVGPDFGKKRLGLPGDEVDNKVKGA KRLGLPGDEVDNKVKGAAGRTDLLRLRRRF R L G V K G 0 0 1 2 0 0 1 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 13 1 1382.7405 P78527 P78527 2705 2717 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00011926 142.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 4 1 2 2 0.8449 0.9464 21.23 14 Median 0.90258 0.80906 11.396 3 0 Plateau 1.3243 1.2599 16.816 2 1 Median 0.82698 0.9464 8.8844 4 1 Median 0.63373 0.5903 NaN 1 0 Median 0.7651 0.82744 0.33436 2 1 Median 1.2453 1.1178 5.7132 2 0 Median 627220000 323820000 303400000 97014000 49312000 47701000 169540000 78518000 91021000 322630000 175320000 147310000 2898500 2013500 884930 29994000 16594000 13400000 5145900 2065200 3080700 20066 2647 20922 104973;104974;104975;104976;104977;104978;104979;104980;104981;104982;104983;104984;104985;104986;104987 106500;106501;106502;106503;106504;106505;106506;106507;106508;106509;106510;106511;106512;106513;106514;106515 106512 16 LGLPGEAGLEGSEPSDALGPDDKK LTMSPLHKRRQRRGRLGLPGEAGLEGSEPS EGSEPSDALGPDDKKDGDLDTDELLKGEGG R L G K K D 2 0 0 3 0 0 3 5 0 0 4 2 0 0 3 2 0 0 0 0 0 0 24 1 2351.1492 O14686 O14686 1618 1641 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 2.0504E-12 59.356 By MS/MS By MS/MS 1 1 0.77193 0.82832 33.611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57625 0.6531 NaN 1 0 Median 1.0341 1.0505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13604000 9011500 4592600 0 0 0 0 0 0 12798000 8678600 4119400 806070 332910 473160 0 0 0 0 0 0 20067 1490 20923 104988;104989 106516;106517;106518 106516 3 LGLPGIPR MSSAQIVSATAIHNKLGLPGIPRPTFPGAP ATAIHNKLGLPGIPRPTFPGAPGFWPGMIQ K L G P R P 0 1 0 0 0 0 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 8 0 821.51232 H0YE88;P28347;H0YEJ9;E9PKB7 H0YE88 140 147 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 0.014189 51.572 By MS/MS 1 0.75389 0.75966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75389 0.75966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2827900 1720800 1107100 0 0 0 0 0 0 2827900 1720800 1107100 0 0 0 0 0 0 0 0 0 20068 1178 20924 104990 106519 106519 1 LGLPPLTPEQQEALQK TDSIKMENGQSTAAKLGLPPLTPEQQEALQ GLPPLTPEQQEALQKAKKYAMEQSIKSVLV K L G Q K A 1 0 0 0 0 3 2 1 0 0 4 1 0 0 3 0 1 0 0 0 0 0 16 0 1760.9672 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6 46 61 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 1.4635E-10 163.12 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 6 1 0.67462 0.6143 12.316 12 Median 0.69021 0.65653 NaN 1 0 Median 0.61436 0.54386 NaN 1 0 Median 0.62052 0.60994 8.2567 3 0 Median 0.73445 0.62864 6.4056 6 0 Median 0.46471 0.44322 NaN 1 0 Median NaN NaN NaN 0 0 Median 117670000 70571000 47104000 7010800 4157100 2853700 628270 370160 258110 101790000 61406000 40381000 4652400 2597200 2055200 3596600 2040600 1556100 0 0 0 20069 284 20925 104991;104992;104993;104994;104995;104996;104997;104998;104999;105000;105001;105002 106520;106521;106522;106523;106524;106525;106526;106527;106528;106529;106530 106524 11 LGLQDGKEYLFQAK GSVAFDYRKRKHVFKLGLQDGKEYLFQAKD KLGLQDGKEYLFQAKDEAEMSSWLRVVNAA K L G A K D 1 0 0 1 0 2 1 2 0 0 3 2 0 1 0 0 0 0 1 0 0 0 14 1 1608.8512 O15020;A4QPE4 O15020 2298 2311 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 3 0.0097341 26.112 By MS/MS 2 1.0102 1.2506 28.753 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0102 1.2506 28.753 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11785000 5575100 6209500 0 0 0 0 0 0 11785000 5575100 6209500 0 0 0 0 0 0 0 0 0 20070 1512 20926 105003;105004 106531 106531 1 LGLQHLR QDMPNAMPVSELTDKLGLQHLRSRTWYVQA PVSELTDKLGLQHLRSRTWYVQATCATQGT K L G L R S 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 835.50282 P84085;C9J1Z8 P84085 143 149 ARF5 ADP-ribosylation factor 5 yes no 2 0.0022429 114.67 By MS/MS By MS/MS 1 1 1.3398 1.2191 4.3539 2 Median 1.1849 1.1821 NaN 1 0 Median 1.5151 1.2572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6647800 2815600 3832200 3647900 1642800 2005100 2999900 1172800 1827000 0 0 0 0 0 0 0 0 0 0 0 0 20071 2665 20927 105005;105006 106532;106533;106534 106533 3 LGLQNDLFSLAR LLPGIRDLSLPPVDRLGLQNDLFSLARAGI VDRLGLQNDLFSLARAGIISTVEVLKVMEA R L G A R A 1 1 1 1 0 1 0 1 0 0 4 0 0 1 0 1 0 0 0 0 0 0 12 0 1345.7354 E9PLK3;P55786 E9PLK3 612 623 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 6.2921E-15 155.42 By MS/MS By MS/MS By MS/MS 3 4 1 1.1486 1.1278 9.6658 8 Median 1.1475 1.1231 8.8001 3 0 Median 1.3412 1.1611 12.472 4 1 Median 1.0547 1.1326 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129880000 58758000 71119000 39003000 17998000 21005000 87551000 39195000 48356000 3322700 1564700 1758100 0 0 0 0 0 0 0 0 0 20072 960 20928 105007;105008;105009;105010;105011;105012;105013;105014 106535;106536;106537;106538;106539;106540;106541;106542;106543;106544;106545;106546;106547;106548;106549 106543 15 LGLQYSQGLVSGSNAR FMSIPSSVIHPAMVRLGLQYSQGLVSGSNA GLQYSQGLVSGSNARCIALLRALQQVIQDY R L G A R C 1 1 1 0 0 2 0 3 0 0 3 0 0 0 0 3 0 0 1 1 0 0 16 0 1648.8533 A0A087WTA5;E7ERK9;Q9UI10;H7C2L8;A0A087WW69 A0A087WTA5 207 222 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 1.0303E-19 133.05 By MS/MS By MS/MS By MS/MS 1 2 1 5.2032 5.0776 162.82 4 Median 19.657 18.327 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3013 1.3276 8.201 2 2 Median 31.282 26.384 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 174730000 13607000 161130000 131230000 6237800 125000000 0 0 0 13436000 6243300 7192400 30064000 1126000 28938000 0 0 0 0 0 0 20073 16 20929 105015;105016;105017;105018 106550;106551;106552;106553 106550 4 LGLSIPDLTPK AGLGLAGYVEALASRLGLSIPDLTPKQVDM LASRLGLSIPDLTPKQVDMWQTRLSTHLGK R L G P K Q 0 0 0 1 0 0 0 1 0 1 3 1 0 0 2 1 1 0 0 0 0 0 11 0 1152.6754 Q6PI78 Q6PI78 184 194 TMEM65 Transmembrane protein 65 yes yes 2 0.008703 40.002 By MS/MS By matching By matching 1 1 1 0.70097 0.64063 25.797 3 Median 0.6308 0.59629 NaN 1 0 Median 1.097 0.96204 NaN 1 0 Median 0.70097 0.64063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5853200 3522300 2330900 5171000 3156600 2014400 346880 163980 182900 335300 201720 133580 0 0 0 0 0 0 0 0 0 20074 3172 20930 105019;105020;105021 106554 106554 1 LGLSLVVPGGGIK CNSPLFKYMDNDYAKLGLSLVVPGGGIKKK AKLGLSLVVPGGGIKKKSPATPQAKPDGVT K L G I K K 0 0 0 0 0 0 0 4 0 1 3 1 0 0 1 1 0 0 0 2 0 0 13 0 1208.7493 Q99747 Q99747 269 281 NAPG Gamma-soluble NSF attachment protein yes yes 2 0.0013887 54.608 By MS/MS By matching 1 1 1.1567 0.99332 31.637 2 Median NaN NaN NaN 0 0 Median 0.94416 0.79421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.417 1.2424 NaN 1 0 Median 3149200 1586300 1562900 0 0 0 3068400 1551800 1516600 0 0 0 0 0 0 0 0 0 80794 34449 46345 20075 3768 20931 105022;105023 106555 106555 1 LGLSTLGELK VLAAKERHCGELKRRLGLSTLGELKQNLSR ELKRRLGLSTLGELKQNLSRSWHDVQVSSA R L G L K Q 0 0 0 0 0 0 1 2 0 0 4 1 0 0 0 1 1 0 0 0 0 0 10 0 1029.607 O43399;A0A087WYR3;A0A087WZ51 O43399 81 90 TPD52L2 Tumor protein D54 yes no 2 0.004358 68.016 By MS/MS 1 1.0753 0.99775 NaN 1 Median 1.0753 0.99775 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9756200 5238300 4517900 9756200 5238300 4517900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20076 1571 20932 105024 106556 106556 1 LGLSTLGELKQNLSR VLAAKERHCGELKRRLGLSTLGELKQNLSR LGLSTLGELKQNLSRSWHDVQVSSAYVKTS R L G S R S 0 1 1 0 0 1 1 2 0 0 5 1 0 0 0 2 1 0 0 0 0 0 15 1 1627.9257 O43399;A0A087WYR3;A0A087WZ51 O43399 81 95 TPD52L2 Tumor protein D54 yes no 3 7.7648E-05 71.692 By MS/MS By matching 2 1 1.3062 1.2852 13.43 3 Plateau 1.2168 1.2375 18.457 2 0 Median 1.261 1.1714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10246000 4316500 5929400 5689800 2316100 3373700 4556100 2000400 2555700 0 0 0 0 0 0 0 0 0 0 0 0 20077 1571 20933 105025;105026;105027 106557;106558 106558 2 LGLTDINEAYVETLK RPSPWRPLVLLIPLRLGLTDINEAYVETLK LGLTDINEAYVETLKHCFMMPQSLGVIGGK R L G L K H 1 0 1 1 0 0 2 1 0 1 3 1 0 0 0 0 2 0 1 1 0 0 15 0 1677.8825 Q9Y4P1;C9JIK8 Q9Y4P1 230 244 ATG4B Cysteine protease ATG4B yes no 2 2.2274E-09 102.4 By matching By MS/MS 1 1 0.97971 0.89558 7.3101 2 Median 0.87159 0.85047 NaN 1 0 Median 1.1012 0.94309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5967500 3011700 2955800 1175700 602770 572930 4791800 2408900 2382800 0 0 0 0 0 0 0 0 0 0 0 0 20078 700 20934 105028;105029 106559;106560 106559 2 LGLTEIR RKKRGGRRYRKMKERLGLTEIRKQANRMSF RYRKMKERLGLTEIRKQANRMSFGEIEEDA R L G I R K 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 Q8WWY3;E7EVX8 Q8WWY3 366 372 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.027519 67.035 By matching By MS/MS By MS/MS 2 1 1 1.214 1.0822 15.197 4 Median NaN NaN NaN 0 0 Median 1.214 1.0633 19.172 2 0 Median 0.94726 0.9617 NaN 1 1 Median 1.4321 1.2379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10084000 4961200 5122400 0 0 0 1411400 660400 750960 7677500 3907300 3770200 994730 393470 601250 0 0 0 0 0 0 20079 3513 20935 105030;105031;105032;105033 106561;106562 106562 2 LGLVEFNILWNR CRSMVNLMDRDGNGKLGLVEFNILWNRIRN NGKLGLVEFNILWNRIRNYLSIFRKFDLDK K L G N R I 0 1 2 0 0 0 1 1 0 1 3 0 0 1 0 0 0 1 0 1 0 0 12 0 1472.814 P07384 P07384 605 616 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0030208 47.198 By MS/MS 1 1.2867 1.1144 NaN 1 Median NaN NaN NaN 0 0 Median 1.2867 1.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4533700 1919600 2614100 0 0 0 4533700 1919600 2614100 0 0 0 0 0 0 0 0 0 0 0 0 20080 1886 20936 105034 106563;106564 106564 2 LGLVGVNLTLDGVK NLVVKPDQLIKRRGKLGLVGVNLTLDGVKS KLGLVGVNLTLDGVKSWLKPRLGQEATVGK K L G V K S 0 0 1 1 0 0 0 3 0 0 4 1 0 0 0 0 1 0 0 3 0 0 14 0 1396.829 P53396;K7ESG8 P53396 69 82 ACLY ATP-citrate synthase yes no 2 0.00014046 80.763 By MS/MS By MS/MS By matching 1 7 1 1.2372 1.1943 12.364 9 Median 1.2289 1.1943 NaN 1 0 Median 1.2626 1.0614 12.769 7 0 Median 1.1836 1.2826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77331000 34025000 43306000 6905800 2898400 4007400 70208000 31022000 39186000 217410 104000 113400 0 0 0 0 0 0 0 0 0 20081 2467 20937 105035;105036;105037;105038;105039;105040;105041;105042;105043 106565;106566;106567;106568;106569;106570 106567 6 LGLVGWVQNTDR QGVFFRKHTQAEGKKLGLVGWVQNTDRGTV GKKLGLVGWVQNTDRGTVQGQLQGPISKVR K L G D R G 0 1 1 1 0 1 0 2 0 0 2 0 0 0 0 0 1 1 0 2 0 0 12 0 1356.715 G3V2U7;P07311 G3V2U7 64 75 ACYP1 Acylphosphatase;Acylphosphatase-1 yes no 2 0.0006333 84.213 By MS/MS By matching By MS/MS 1 1 1 1.1954 1.09 19.918 3 Median 0.84807 0.82447 NaN 1 0 Median 1.2874 1.09 NaN 1 0 Median 1.1954 1.2125 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17079000 8860100 8218500 10473000 5565400 4907800 1968800 833940 1134800 4636700 2460800 2175900 0 0 0 0 0 0 0 0 0 20082 1110 20938 105044;105045;105046 106571;106572;106573 106572 3 LGMENDDTAVQYAIGR QSVCAPSEQLLHLIKLGMENDDTAVQYAIG GMENDDTAVQYAIGRSDTVAPGTGIDLEFD K L G G R S 2 1 1 2 0 1 1 2 0 1 1 0 1 0 0 0 1 0 1 1 0 0 16 0 1751.8148 Q05048;A0A0A0MSZ9;A3KFI9 Q05048 56 71 CSTF1 Cleavage stimulation factor subunit 1 yes no 2;3 2.4125E-14 177.76 By matching By MS/MS By MS/MS 1 4 3 1.2307 1.1305 9.2055 8 Median NaN NaN NaN 0 0 Median 1.3287 1.1701 NaN 1 0 Median 1.0445 1.0203 12.338 4 1 Median 1.3165 1.1341 2.105 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161780000 77179000 84601000 0 0 0 541610 213230 328380 143500000 69511000 73992000 17736000 7455000 10281000 0 0 0 0 0 0 20083 2716 20939;20940 105047;105048;105049;105050;105051;105052;105053;105054 106574;106575;106576;106577;106578;106579;106580;106581;106582;106583 106575 1403 10 LGMIAGGTGITPMLQLIR QPNKKSPPEPRVAKKLGMIAGGTGITPMLQ IAGGTGITPMLQLIRAILKVPEDPTQCFLL K L G I R A 1 1 0 0 0 1 0 4 0 3 3 0 2 0 1 0 2 0 0 0 0 0 18 0 1841.0267 Q9UHQ9;H7C0R7 Q9UHQ9 179 196 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 8.3865E-06 64.55 By MS/MS By matching By matching 1 1 1 0.8378 0.76721 12.391 3 Median 0.8378 0.80907 NaN 1 0 Median 0.74611 0.63886 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91201 0.76721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031500 1581100 1450400 2344100 1208800 1135300 597910 328180 269730 0 0 0 89491 44095 45396 0 0 0 0 0 0 20084 4280 20941 105055;105056;105057 106584 106584 1916 1 LGMLSPEGTCK INVLLKPNTSVQFLRLGMLSPEGTCKAFDT QFLRLGMLSPEGTCKAFDTAGNGYCRSEGV R L G C K A 0 0 0 0 1 0 1 2 0 0 2 1 1 0 1 1 1 0 0 0 0 0 11 0 1191.5628 P49327;A0A0U1RQF0 P49327 203 213 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00018859 94.692 By MS/MS 1 1.1917 1.0564 NaN 1 Median NaN NaN NaN 0 0 Median 1.1917 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6656300 2891900 3764400 0 0 0 6656300 2891900 3764400 0 0 0 0 0 0 0 0 0 0 0 0 20085 2377 20942 105058 106585;106586 106585 2 LGMMPLWTK PWEPGSFRVGLIALKLGMMPLWTKDGQKHV GLIALKLGMMPLWTKDGQKHVVTLLQVQDC K L G T K D 0 0 0 0 0 0 0 1 0 0 2 1 2 0 1 0 1 1 0 0 0 0 9 0 1075.5558 H0Y9G6;E7ETU7;P09001;E9PF06 H0Y9G6 119 127 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.024906 37.727 By MS/MS By matching By matching By matching 1 1 1 1 1.0594 0.95255 11.566 4 Median 0.89927 0.87046 NaN 1 0 Median 1.2833 1.0875 NaN 1 0 Median 0.89178 0.87378 NaN 1 0 Median 1.2481 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5336900 2642300 2694600 3526800 1907700 1619100 990120 379890 610220 736790 323660 413130 83240 31085 52155 0 0 0 0 0 0 20086 889 20943 105059;105060;105061;105062 106587;106588 106588 2 LGMPQFLSPEAQSLLR GKDRKETMTMILKAKLGMPQFLSPEAQSLL GMPQFLSPEAQSLLRMLFKRNPANRLGAGP K L G L R M 1 1 0 0 0 2 1 1 0 0 4 0 1 1 2 2 0 0 0 0 0 0 16 0 1785.9447 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 256 271 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.00013453 55.452 By MS/MS By MS/MS By matching 2 1 1 0.762 0.73026 14.894 3 Median 0.83319 0.8232 16.94 2 0 Median NaN NaN NaN 0 0 Median 0.68503 0.7062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5820000 3350600 2469400 5236300 3005900 2230400 0 0 0 583720 344650 239070 0 0 0 0 0 0 0 0 0 20087 581 20944 105063;105064;105065;105066 106589;106590;106591;106592;106593 106591 5 LGMPQFLSTEAQSLLR GKDRKETMTLILKAKLGMPQFLSTEAQSLL GMPQFLSTEAQSLLRALFKRNPANRLGSGP K L G L R A 1 1 0 0 0 2 1 1 0 0 4 0 1 1 1 2 1 0 0 0 0 0 16 0 1789.9397 E9PGT3;Q15418 E9PGT3 268 283 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 2 0.00013333 53.967 By matching By MS/MS By matching 2 1 1 0.95359 0.88033 72.747 4 Median 1.7386 1.7873 103.52 2 0 Median 1.0384 0.90158 NaN 1 0 Median 0.81691 0.84472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5269200 2732300 2536900 2758800 1378400 1380400 2294200 1238700 1055500 216190 115240 100950 0 0 0 0 0 0 0 0 0 20088 926 20945 105067;105068;105069;105070 106594;106595;106596 106595 3 LGMSADPDNEDATDKVNK KTPKKAQVSKSLKERLGMSADPDNEDATDK SADPDNEDATDKVNKVGEIHVKTLEEILLE R L G N K V 2 0 2 4 0 0 1 1 0 0 1 2 1 0 1 1 1 0 0 1 0 0 18 1 1918.8578 O75152;E9PQ61;E9PBY7 O75152 335 352 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 3.0357E-06 55.589 By MS/MS By MS/MS By MS/MS 1 2 1 0.96406 1.0605 13.403 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91511 1.0455 NaN 1 0 Median 1.1241 1.0844 23.021 2 0 Median 0.9608 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median 23362000 11668000 11693000 0 0 0 0 0 0 6712300 3064600 3647700 3852600 1959900 1892700 12797000 6643600 6153000 0 0 0 20089 1650 20946 105071;105072;105073;105074 106597;106598;106599;106600;106601;106602 106600 6 LGMVEWIEPPKR SLYKFEGEDYREKQKLGMVEWIEPPKRERK KQKLGMVEWIEPPKRERKANYAVDAYFREA K L G K R E 0 1 0 0 0 0 2 1 0 1 1 1 1 0 2 0 0 1 0 1 0 0 12 1 1453.7752 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 728 739 SMARCA1 Probable global transcription activator SNF2L1 no no 3 0.006925 34.96 By MS/MS By MS/MS By matching 2 1 1 1.2699 1.1297 37.252 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8329 2.0761 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95285 1.0555 NaN 1 0 Median 1.2699 1.1297 NaN 1 0 Median 9850300 5217900 4632400 0 0 0 0 0 0 7561400 3893600 3667800 0 0 0 2162200 1266000 896210 126630 58291 68337 20090 167;643 20947 105075;105076;105077;105078 106603;106604 106604 2 LGNDFHTNK VKKAARVIIEKYYTRLGNDFHTNKRVCEEI EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR R L G N K R 0 0 2 1 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1044.4989 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 473 481 RPS17 40S ribosomal protein S17 yes no 2 0.010372 48.283 By matching By MS/MS 1 1 1.0844 0.98184 1.5913 2 Median 1.0294 0.97086 NaN 1 0 Median 1.1422 0.99295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1630600 773670 856930 483260 246260 237000 1147300 527410 619930 0 0 0 0 0 0 0 0 0 0 0 0 20091 1214 20948 105079;105080 106605;106606 106606 2 LGNDFHTNKR VKKAARVIIEKYYTRLGNDFHTNKRVCEEI KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN R L G K R V 0 1 2 1 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 10 1 1200.6 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 473 482 RPS17 40S ribosomal protein S17 yes no 3 0.0030811 40.715 By matching By MS/MS By matching By matching By matching 1 2 2 1 1 1.2464 1.2277 11.114 7 Median 1.1901 1.1796 NaN 1 0 Median 1.2832 1.1327 4.1472 2 0 Median 1.3066 1.3511 4.8737 2 0 Median 1.705 1.5093 NaN 1 0 Median 1.1025 1.2277 NaN 1 0 Median NaN NaN NaN 0 0 Median 9547700 3970300 5577400 2296900 995040 1301900 6477400 2635100 3842400 622810 274300 348520 123910 55588 68322 26675 10291 16384 0 0 0 20092 1214 20949 105081;105082;105083;105084;105085;105086;105087 106607;106608 106607 2 LGNDFMGITLASSQAVSNAR FVAELTYNYGVGDYKLGNDFMGITLASSQA MGITLASSQAVSNARKLEWPLTEVAEGVFE K L G A R K 3 1 2 1 0 1 0 2 0 1 2 0 1 1 0 3 1 0 0 1 0 0 20 0 2051.0106 Q9HC38;F6TLX2;I3L3Q4 Q9HC38 97 116 GLOD4 Glyoxalase domain-containing protein 4 yes no 2;3 5.5904E-07 56.648 By MS/MS By MS/MS 2 2 1.1017 1.0598 36.037 4 Median 1.1017 1.0598 1.7589 2 0 Median 1.5732 1.3212 58.367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13217000 6043400 7173100 5869000 2702100 3166900 7347500 3341300 4006200 0 0 0 0 0 0 0 0 0 0 0 0 20093 4025 20950 105088;105089;105090;105091 106609;106610;106611;106612;106613 106610 5 LGNEVGYSIR AMSVAARVAREMGVKLGNEVGYSIRFEDCT EMGVKLGNEVGYSIRFEDCTSERTVLRYMT K L G I R F 0 1 1 0 0 0 1 2 0 1 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1106.572 O60231;A0A140T947 O60231 473 482 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.003753 69.276 By MS/MS 1 2.007 1.7059 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.007 1.7059 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3833400 1299100 2534300 0 0 0 0 0 0 0 0 0 3833400 1299100 2534300 0 0 0 0 0 0 20094 1605 20951 105092 106614 106614 1 LGNFFSPK TELEEGLRNGVYLAKLGNFFSPKVVSLKKI NGVYLAKLGNFFSPKVVSLKKIYDREQTRY K L G P K V 0 0 1 0 0 0 0 1 0 0 1 1 0 2 1 1 0 0 0 0 0 0 8 0 908.4756 P46940;A0A0J9YXZ5 P46940 81 88 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0055363 75.213 By MS/MS By matching 1 2 1.0793 0.96582 32.327 3 Median 0.99862 0.96582 NaN 1 0 Median 1.4295 1.2708 39.852 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15542000 7143400 8398800 11284000 5228700 6055200 4258300 1914700 2343500 0 0 0 0 0 0 0 0 0 0 0 0 20095 2350 20952 105093;105094;105095 106615;106616 106616 2 LGNGINIIVATPGR GLIMGGSNRSAEAQKLGNGINIIVATPGRL KLGNGINIIVATPGRLLDHMQNTPGFMYKN K L G G R L 1 1 2 0 0 0 0 3 0 3 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1393.8041 Q9NVP1 Q9NVP1 298 311 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 7.5235E-08 132.25 By MS/MS By matching By MS/MS By matching 1 2 3 1 0.96533 0.91648 20.887 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84602 0.85935 NaN 1 0 Median 1.2051 1.0241 15.698 2 0 Median 0.96575 0.99197 5.158 3 0 Plateau 0.71028 0.58392 NaN 1 0 Median 30696000 15921000 14774000 0 0 0 0 0 0 14380000 7756800 6622900 454350 214970 239380 15306000 7640500 7665600 555420 308800 246610 20096 4137 20953 105096;105097;105098;105099;105100;105101;105102 106617;106618;106619;106620;106621;106622 106620 6 LGNPIVPLNIR VPRDLPSWMKFLHGKLGNPIVPLNIRLFLA LHGKLGNPIVPLNIRLFLAKLVINTEEVFR K L G I R L 0 1 2 0 0 0 0 1 0 2 2 0 0 0 2 0 0 0 0 1 0 0 11 0 1204.7292 P78527 P78527 2133 2143 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.3256E-26 166.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 4 4 1.0545 0.86486 22.809 17 Median 1.4487 1.373 3.2861 2 2 Median 1.0545 0.84314 NaN 1 0 Median 0.69421 0.71658 3.8162 3 2 Median 1.0887 0.95493 18.268 3 0 Median 0.70304 0.71476 7.1668 4 0 Median 1.0977 0.91095 5.4519 4 0 Median 687420000 332520000 354900000 217320000 61448000 155870000 30351000 14791000 15559000 400490000 235260000 165230000 14846000 7022900 7822900 21113000 12462000 8650900 3293500 1526600 1767000 20097 2647 20954 105103;105104;105105;105106;105107;105108;105109;105110;105111;105112;105113;105114;105115;105116;105117;105118;105119 106623;106624;106625;106626;106627;106628;106629;106630;106631;106632;106633;106634;106635;106636;106637;106638;106639;106640;106641;106642;106643 106626 21 LGNSHQPEKPLVR LEKIEEMLENAERERLGNSHQPEKPLVRLR ERLGNSHQPEKPLVRLRVDYSGGFEPFSVL R L G V R L 0 1 1 0 0 1 1 1 1 0 2 1 0 0 2 1 0 0 0 1 0 0 13 1 1473.8052 P49959;F8W7U8 P49959 352 364 MRE11A Double-strand break repair protein MRE11A yes no 2;3 0.0050277 33.866 By matching By MS/MS By MS/MS 1 3 2 0.78041 0.77017 18.683 6 Median NaN NaN NaN 0 0 Median 0.62228 0.56516 NaN 1 0 Median 0.7516 0.79835 15.38 3 0 Median 0.85134 0.79846 10.184 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6147600 3356600 2791000 0 0 0 1623100 871610 751470 3693400 2088800 1604600 831110 396100 435010 0 0 0 0 0 0 20098 2407 20955 105120;105121;105122;105123;105124;105125 106644;106645;106646;106647;106648 106645 5 LGNSLLLK SMVTMEPGYLFLGSRLGNSLLLKYTEKLQE YLFLGSRLGNSLLLKYTEKLQEPPASAVRE R L G L K Y 0 0 1 0 0 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 8 0 856.5382 Q10570 Q10570 388 395 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0019524 141.52 By matching By MS/MS By MS/MS 1 3 2 1.0925 1.0775 8.0598 6 Median NaN NaN NaN 0 0 Median 1.2826 1.1184 NaN 1 0 Median 0.97418 1.0382 9.7764 3 0 Median 1.1941 1.1037 9.6684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46855000 22579000 24277000 0 0 0 3098700 1429500 1669100 41090000 20067000 21023000 2666800 1082500 1584400 0 0 0 0 0 0 20099 2753 20956 105126;105127;105128;105129;105130;105131 106649;106650;106651;106652;106653;106654;106655 106650 7 LGNVNIDIIHR HKTENTYRFLTFAERLGNVNIDIIHRIDRT FAERLGNVNIDIIHRIDRTASYEEEVETYF R L G H R I 0 1 2 1 0 0 0 1 1 3 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1262.7095 O75691 O75691 23 33 UTP20 Small subunit processome component 20 homolog yes yes 3 4.3748E-05 90.685 By MS/MS By MS/MS 2 1 1.1548 1.2129 11.99 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1432 1.2418 3.3389 2 0 Median 1.1659 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11540000 5306200 6233900 0 0 0 0 0 0 10978000 5053300 5924700 562170 252970 309200 0 0 0 0 0 0 20100 1691 20957 105132;105133;105134 106656;106657;106658;106659;106660 106656 5 LGNYAGAVQDCER ANAVYFCNRAAAYSKLGNYAGAVQDCERAI SKLGNYAGAVQDCERAICIDPAYSKAYGRM K L G E R A 2 1 1 1 1 1 1 2 0 0 1 0 0 0 0 0 0 0 1 1 0 0 13 0 1451.6463 O43765;K7EMD6 O43765 138 150 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes no 2 0.000192 93.258 By MS/MS 1 1.2719 1.0578 NaN 1 Median NaN NaN NaN 0 0 Median 1.2719 1.0578 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9271900 5128700 4143200 0 0 0 9271900 5128700 4143200 0 0 0 0 0 0 0 0 0 0 0 0 20101 1588 20958 105135 106661 106661 1 LGPALATGNVVVMK QIIPWNFPLLMQAWKLGPALATGNVVVMKV KLGPALATGNVVVMKVAEQTPLTALYVANL K L G M K V 2 0 1 0 0 0 0 2 0 0 2 1 1 0 1 0 1 0 0 3 0 0 14 0 1368.7799 P05091;F8VP50 P05091 196 209 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00089396 56.548 By MS/MS By matching By matching 1 1 1 0.93792 0.92202 27.733 3 Median 0.93792 0.86818 NaN 1 0 Median 1.6759 1.4423 NaN 1 0 Median 0.90622 0.92202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17059000 8253200 8805500 13923000 6947700 6975000 1845500 655380 1190100 1290500 650170 640370 0 0 0 0 0 0 0 0 0 20102 1860 20959 105136;105137;105138 106662;106663 106663 2 LGPASAADTGSEAKPGALAEGAAEPEPQR DCVERNERLELEAYRLGPASAADTGSEAKP PGALAEGAAEPEPQRHAGRIAFTDADDVAI R L G Q R H 8 1 0 1 0 1 4 4 0 0 2 1 0 0 4 2 1 0 0 0 0 0 29 1 2747.3362 Q9NYB0;A0A590UJT3 Q9NYB0 101 129 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 3 5.8201E-14 53.262 By MS/MS By MS/MS 2 1 0.41176 0.41704 11.181 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37468 0.39971 6.0026 2 2 Median 0.50953 0.47814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36083000 25529000 10553000 0 0 0 0 0 0 22458000 17267000 5191200 13624000 8262600 5361900 0 0 0 0 0 0 20103 4174 20960 105139;105140;105141 106664;106665;106666;106667 106666 4 LGPDDPNVAK VEYYYQRALEIYQTKLGPDDPNVAKTKNNL IYQTKLGPDDPNVAKTKNNLASCYLKQGKF K L G A K T 1 0 1 2 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 10 0 1024.5189 Q9H0B6;A8MZ87;G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 371 380 KLC2;KLC1 Kinesin light chain 2;Kinesin light chain 1 no no 2 0.012016 41.876 By MS/MS 1 0.80555 0.6819 NaN 1 Median NaN NaN NaN 0 0 Median 0.80555 0.6819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5660500 3287100 2373400 0 0 0 5660500 3287100 2373400 0 0 0 0 0 0 0 0 0 0 0 0 20104 896;3922 20961 105142 106668;106669;106670;106671 106670 4 LGPEGELLIR GLVVFAIVFGVALRKLGPEGELLIRFFNSF VALRKLGPEGELLIRFFNSFNEATMVLVSW K L G I R F 0 1 0 0 0 0 2 2 0 1 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1095.6288 Q15758;M0QXM4;M0QX44;M0R144 Q15758 248 257 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 0.0070645 48.283 By MS/MS By matching 1 3 0.8738 0.72948 30.892 4 Median 1.3167 1.2828 NaN 1 0 Median 0.88479 0.71255 7.4985 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25222000 14259000 10963000 4755300 1998100 2757300 20466000 12261000 8205400 0 0 0 0 0 0 0 0 0 0 0 0 20105 2968 20962 105143;105144;105145;105146 106672 106672 1 LGPLAFYK GEYQGVFHCAVETAKLGPLAFYKGLVPAGI CAVETAKLGPLAFYKGLVPAGIRLIPHTVL K L G Y K G 1 0 0 0 0 0 0 1 0 0 2 1 0 1 1 0 0 0 1 0 0 0 8 0 907.51674 B4DLN1 B4DLN1 402 409 no no 2 0.018651 64.803 By MS/MS By matching By MS/MS By matching 4 3 1 1 1.2566 1.0775 23.789 9 Median 1.0422 1.0048 15.123 4 1 Median 1.5105 1.2752 27.944 3 0 Median 0.99405 0.9498 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3684 1.3981 NaN 1 0 Median NaN NaN NaN 0 0 Median 48285000 22425000 25860000 39604000 18770000 20834000 3899200 1537200 2362000 2995700 1500500 1495200 0 0 0 1786500 617430 1169100 0 0 0 20106 598 20963 105147;105148;105149;105150;105151;105152;105153;105154;105155 106673;106674;106675;106676;106677;106678 106675 6 LGPLLDILADSR LFPLLLRLLDPTSSRLGPLLDILADSRHLW SSRLGPLLDILADSRHLWSPFGLRSLAASS R L G S R H 1 1 0 2 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 0 0 0 12 0 1281.7293 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 709 720 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0041475 44.309 By MS/MS By MS/MS By matching 1 2 1 1.0656 0.93594 6.083 4 Median 1.0393 1.0133 NaN 1 0 Median 1.0669 0.93594 5.7819 2 0 Median NaN NaN NaN 0 0 Median 1.0926 0.8971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21619000 10028000 11591000 3014500 1511300 1503100 18531000 8483400 10048000 0 0 0 73415 33746 39669 0 0 0 0 0 0 20107 2835 20964 105156;105157;105158;105159 106679;106680;106681 106679 3 LGPLQVAR DRGIHVEVPPAEAERLGPLQVARVLAKLAE PPAEAERLGPLQVARVLAKLAEKEKVDLVL R L G A R V 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 852.51814 P38117 P38117 99 106 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.0025146 122.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 1 1 1 1.0769 0.91583 24.625 9 Median 0.83984 0.7992 5.3019 3 0 Median 1.2209 1.0356 17.376 2 0 Median 0.92009 0.88335 NaN 1 0 Median 1.4264 1.1849 NaN 1 0 Median 1.533 1.5236 NaN 1 0 Median 1.54 1.248 NaN 1 0 Median 191480000 96772000 94708000 99333000 53216000 46117000 34386000 14822000 19565000 46210000 24178000 22032000 6331800 2511400 3820300 4477300 1732500 2744900 741720 312820 428900 20108 2272 20965 105160;105161;105162;105163;105164;105165;105166;105167;105168 106682;106683;106684;106685;106686;106687;106688;106689;106690;106691;106692 106685 11 LGPNDQYK PDVCWDRNNPEPWNKLGPNDQYKFYSVNVD NPEPWNKLGPNDQYKFYSVNVDYSKLKKER K L G Y K F 0 0 1 1 0 1 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 8 0 933.4556 O00483 O00483 56 63 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 2 0.01108 75.854 By MS/MS By MS/MS By matching 1 1 1 0.24075 0.2861 34.316 3 Median 0.17379 0.15877 NaN 1 1 Median 0.34692 0.28922 NaN 1 0 Median 0.24075 0.2861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9161100 7325100 1836000 6047500 5017700 1029700 2438900 1795400 643430 674800 511980 162820 0 0 0 0 0 0 0 0 0 20109 1467 20966 105169;105170;105171 106693;106694;106695 106693 3 LGPQASSQVVMPPLVR IPPPLVRGGQQASSKLGPQASSQVVMPPLV GPQASSQVVMPPLVRGAQQIHSIRQHSSTG K L G V R G 1 1 0 0 0 2 0 1 0 0 2 0 1 0 3 2 0 0 0 3 0 0 16 0 1677.9236 Q86YP4 Q86YP4 234 249 GATAD2A Transcriptional repressor p66-alpha yes yes 2 2.9259E-06 77.64 By MS/MS By matching By MS/MS 2 1 2 0.64396 0.65933 29.63 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65758 0.67111 2.5036 2 2 Median 0.44254 0.37002 NaN 1 0 Median 0.52188 0.53991 33.735 2 0 Median NaN NaN NaN 0 0 Median 21453000 13315000 8138000 0 0 0 0 0 0 18763000 11557000 7206200 232950 145080 87868 2456800 1612900 843890 0 0 0 20110 3309 20967 105172;105173;105174;105175;105176 106696;106697;106698 106696 3 LGPSVVGLAR RGYVGSIQPHGVFFRLGPSVVGLARYSHVS GVFFRLGPSVVGLARYSHVSQHSPSKKALY R L G A R Y 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 967.58147 Q14690;A0A3B3IUD7 Q14690 1343 1352 PDCD11 Protein RRP5 homolog yes no 2 0.00034554 84.743 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.1778 1.0966 9.1818 6 Median NaN NaN NaN 0 0 Median 1.3647 1.1551 NaN 1 0 Median 0.95819 1.0291 1.628 2 0 Median 1.4573 1.2795 NaN 1 0 Median 1.129 1.1617 NaN 1 0 Median 1.2286 1.0236 NaN 1 0 Median 42959000 20538000 22421000 0 0 0 2752500 1413500 1339000 26686000 13395000 13291000 2159500 937510 1222000 9636600 4020300 5616200 1724300 771490 952810 20111 448 20968 105177;105178;105179;105180;105181;105182 106699;106700;106701;106702;106703;106704;106705;106706 106700 8 LGPVPSSTIEPAEAQSASSDLPQNVTK QQPILPVVKQSVKERLGPVPSSTIEPAEAQ EAQSASSDLPQNVTKLSVKDRLGFVSKPSV R L G T K L 3 0 1 1 0 2 2 1 0 1 2 1 0 0 4 5 2 0 0 2 0 0 27 0 2722.3661 Q5T8P6 Q5T8P6 640 666 RBM26 RNA-binding protein 26 no no 3 1.7014E-05 39.153 By MS/MS 1 0.37909 0.408 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37909 0.408 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6678300 4888100 1790200 0 0 0 0 0 0 6678300 4888100 1790200 0 0 0 0 0 0 0 0 0 20112 3097 20969 105183 106707 106707 1 LGPYVDHYYR CSLVELLVQLARDLKLGPYVDHYYRDYPTL ARDLKLGPYVDHYYRDYPTLVRTTGQVCTI K L G Y R D 0 1 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 3 1 0 0 10 0 1281.6142 Q9H1A4;H0Y564 Q9H1A4 799 808 ANAPC1 Anaphase-promoting complex subunit 1 yes no 3 0.0013017 51.927 By matching By MS/MS 1 2 0.79383 0.86841 21.46 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79383 0.86841 NaN 1 0 Median 0.82129 0.7134 25.754 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11773000 6068000 5705500 0 0 0 0 0 0 8992200 4654800 4337400 2781200 1413200 1368000 0 0 0 0 0 0 20113 3933 20970 105184;105185;105186 106708;106709 106709 2 LGQALTEVYAK DSISETVILRGEPEKLGQALTEVYAKANSF EPEKLGQALTEVYAKANSFTVSSVAAPSWL K L G A K A 2 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 0 1191.6499 Q00341;A0A024R4E5;H7C0A4 Q00341 350 360 HDLBP Vigilin yes no 2 0.0031943 70.056 By MS/MS By matching By matching By MS/MS By matching 1 2 1 2 1 1.0757 0.94023 39.589 6 Median NaN NaN NaN 0 0 Median 0.84693 0.78052 5.9229 2 0 Median 1.6359 1.7628 NaN 1 0 Median 0.92141 0.80232 42.835 2 1 Median NaN NaN NaN 0 0 Median 1.4721 1.2728 NaN 1 0 Median 14428000 5764300 8663900 0 0 0 2628400 1278900 1349500 6360100 1958900 4401300 5165400 2389500 2775900 0 0 0 274200 136950 137250 20114 4 20971 105187;105188;105189;105190;105191;105192;105193 106710;106711;106712 106712 3 LGQEATVGK VNLTLDGVKSWLKPRLGQEATVGKATGFLK SWLKPRLGQEATVGKATGFLKNFLIEPFVP R L G G K A 1 0 0 0 0 1 1 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 901.4869 P53396;K7ESG8 P53396 89 97 ACLY ATP-citrate synthase yes no 2 0.0039044 79.474 By MS/MS 1 1.2485 1.0588 NaN 1 Median NaN NaN NaN 0 0 Median 1.2485 1.0588 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7703400 3343700 4359700 0 0 0 7703400 3343700 4359700 0 0 0 0 0 0 0 0 0 0 0 0 20115 2467 20972 105194 106713 106713 1 LGQERDPGGITAGSTDEPPMLTK AGPPEGVPEEAQPPRLGQERDPGGITAGST GITAGSTDEPPMLTKEEPVPELLEAETMEM R L G T K E 1 1 0 2 0 1 2 4 0 1 2 1 1 0 3 1 3 0 0 0 0 0 23 1 2369.1533 I3L1Q2;Q8WUZ0 I3L1Q2 143 165 BCL7C B-cell CLL/lymphoma 7 protein family member C yes no 3 2.0478E-05 37.373 By MS/MS By matching 1 1 0.54178 0.54806 44.743 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69175 0.75202 NaN 1 0 Median 0.42432 0.39941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7109900 3801600 3308300 0 0 0 0 0 0 6598700 3423500 3175200 511190 378080 133120 0 0 0 0 0 0 20116 1278 20973 105195;105196 106714 106714 1 LGQGVLVQVSPSLVK DGAVSLHTRSLKYGKLGQGVLVQVSPSLVK LGQGVLVQVSPSLVKRQKTHFHDLPCGASV K L G V K R 0 0 0 0 0 2 0 2 0 0 3 1 0 0 1 2 0 0 0 4 0 0 15 0 1522.9083 Q13868 Q13868 166 180 EXOSC2 Exosome complex component RRP4 yes yes 2 0.00032682 66.267 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1.1101 0.95688 8.0607 7 Median 0.99353 0.90748 NaN 1 0 Median 1.1447 0.96052 NaN 1 0 Median 0.99334 0.95688 NaN 1 0 Median 1.1757 0.96913 2.0996 2 0 Median 1.1101 1.1331 NaN 1 0 Median 1.0713 0.87834 NaN 1 0 Median 46137000 22659000 23478000 16401000 7984100 8416500 5372700 2456000 2916700 20293000 10272000 10021000 1548800 746180 802610 2364900 1119700 1245200 157240 81010 76229 20117 2843 20974 105197;105198;105199;105200;105201;105202;105203 106715;106716;106717;106718;106719;106720;106721;106722 106716 8 LGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQAR NAGKTTLLHMLKDDRLGQHVPTLHPTSEEL MTFTTFDLGGHEQARRVWKNYLPAINGIVF R L G A R R 2 1 0 1 0 2 3 4 3 1 4 0 1 2 2 1 6 0 0 1 0 0 34 0 3690.81 Q9NR31;Q5SQT8 Q9NR31 50 83 SAR1A GTP-binding protein SAR1a yes no 5 8.3774E-06 33.234 By matching By MS/MS 1 1 1.6657 1.5162 109.08 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1002 3.279 NaN 1 0 Median 0.89492 0.70107 NaN 1 0 Median 3747000 1398600 2348400 0 0 0 0 0 0 0 0 0 0 0 0 1498100 292290 1205800 2248900 1106300 1142600 20118 4077 20975 105204;105205 106723 106723 1 LGQHVVGMAPLSVGSLDDEPGGEAETK ETSEQKTNLEDVGRRLGQHVVGMAPLSVGS VGSLDDEPGGEAETKMLSQPYLLDPSITLG R L G T K M 2 0 0 2 0 1 3 5 1 0 3 1 1 0 2 2 1 0 0 3 0 0 27 0 2692.3014 P43897 P43897 256 282 TSFM Elongation factor Ts, mitochondrial yes yes 3 1.3642E-25 74.763 By MS/MS By MS/MS By MS/MS 1 2 1 0.67238 0.6469 16.062 4 Median 0.63798 0.61153 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67238 0.6469 1.2128 2 0 Median 1.0218 0.87128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28014000 15958000 12057000 4764800 2755200 2009600 0 0 0 22375000 12767000 9607600 874340 434930 439410 0 0 0 0 0 0 20119 2328 20976;20977 105206;105207;105208;105209 106724;106725;106726;106727;106728;106729;106730 106727 1059 7 LGQIYQSWLDK SVHGKPSVVYRFFTRLGQIYQSWLDKSTPY FFTRLGQIYQSWLDKSTPYTAVRWVVTLGL R L G D K S 0 0 0 1 0 2 0 1 0 1 2 1 0 0 0 1 0 1 1 0 0 0 11 0 1349.698 O15258;Q5T092;A0A0A0MR06;Q5T091;Q5T093 O15258 25 35 RER1 Protein RER1 yes no 2 0.00016921 110.14 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0727 1.1448 11.287 5 Median 1.1018 1.0831 8.8581 2 0 Median 1.4862 1.3196 NaN 1 0 Median 1.0674 1.1448 NaN 1 0 Median 1.0727 0.99716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56200000 24986000 31214000 35774000 16107000 19668000 13131000 5527600 7602900 7158100 3293700 3864500 137440 58584 78857 0 0 0 0 0 0 20120 1533 20978 105210;105211;105212;105213;105214 106731;106732;106733;106734;106735;106736;106737 106731 7 LGQMIVDYENPLKK AHEMTHGASDREYPRLGQMIVDYENPLKKM RLGQMIVDYENPLKKMMEEFVPHSKSLSDA R L G K K M 0 0 1 1 0 1 1 1 0 1 2 2 1 0 1 0 0 0 1 1 0 0 14 1 1646.8702 Q9Y2A7 Q9Y2A7 178 191 NCKAP1 Nck-associated protein 1 yes yes 3 0.003215 31.827 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.90146 0.93728 27.905 4 Median 0.68601 0.7213 NaN 1 1 Median 0.80292 0.75139 NaN 1 0 Median 1.0121 1.1692 NaN 1 0 Median 1.2753 1.2148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19459000 9574500 9884500 5803600 3092700 2710900 1905500 1024300 881180 9749500 4587900 5161500 2000500 869640 1130800 0 0 0 0 0 0 20121 4383 20979 105215;105216;105217;105218 106738;106739 106739 2 LGQMVLSGVDTVLGK KSVVTGGVQSVMGSRLGQMVLSGVDTVLGK LGQMVLSGVDTVLGKSEEWADNHLPLTDAE R L G G K S 0 0 0 1 0 1 0 3 0 0 3 1 1 0 0 1 1 0 0 3 0 0 15 0 1515.8331 O60664;K7ERZ3;K7EL96 O60664 181 195 PLIN3 Perilipin-3 yes no 2 7.0744E-10 111.63 By MS/MS By MS/MS By matching By matching By matching By matching 4 4 2 1 1 1 1.1583 0.98122 40.247 13 Median 0.81311 0.77801 44.49 4 1 Median 1.1506 0.97218 20.872 4 0 Median 1.4133 1.4981 65.957 2 0 Median 1.3129 1.1714 NaN 1 0 Median 1.9768 1.953 NaN 1 0 Median 1.5247 1.3063 NaN 1 0 Median 44088000 20837000 23251000 12461000 6473800 5987600 29065000 13381000 15685000 1582100 568890 1013200 658240 281920 376310 101190 39596 61589 219430 92221 127210 20122 1624 20980;20981 105219;105220;105221;105222;105223;105224;105225;105226;105227;105228;105229;105230;105231 106740;106741;106742;106743;106744;106745;106746 106743 521 7 LGQQPLPR PAAVALVLMLLRSQRLGQQPLPRRPGHDDG MLLRSQRLGQQPLPRRPGHDDGQRPSGGAA R L G P R R 0 1 0 0 0 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 8 0 907.52395 Q8N726 Q8N726 55 62 CDKN2A Tumor suppressor ARF yes yes 2 0.052986 50.966 By MS/MS 1 1.047 1.0623 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.047 1.0623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995590 472240 523350 0 0 0 0 0 0 995590 472240 523350 0 0 0 0 0 0 0 0 0 20123 3391 20982 105232 106747 106747 1 LGQSDPAPLQHQMDIYQK IYKLDNLVAILDINRLGQSDPAPLQHQMDI SDPAPLQHQMDIYQKRCEAFGWHAIIVDGH R L G Q K R 1 0 0 2 0 4 0 1 1 1 2 1 1 0 2 1 0 0 1 0 0 0 18 0 2068.0048 P29401;A0A0B4J1R6;E9PFF2 P29401 187 204 TKT Transketolase yes no 2;3 1.8913E-52 225.09 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.84032 0.74447 15.978 8 Median 0.76162 0.69627 27.174 3 0 Median 0.88355 0.73557 8.6765 3 1 Median 0.76716 0.75348 NaN 1 0 Median 0.93457 0.79322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 452470000 246760000 205720000 336630000 182630000 154010000 51745000 27705000 24040000 56960000 32864000 24097000 7136900 3562000 3574900 0 0 0 0 0 0 20124 2173 20983;20984 105233;105234;105235;105236;105237;105238;105239;105240 106748;106749;106750;106751;106752;106753;106754;106755;106756;106757;106758;106759;106760;106761 106751 921 14 LGQSIESSYSSIQK QTLLMNQLTVKGLKKLGQSIESSYSSIQKL KLGQSIESSYSSIQKLVISHLQSGSESLLY K L G Q K L 0 0 0 0 0 2 1 1 0 2 1 1 0 0 0 5 0 0 1 0 0 0 14 0 1525.7624 Q9UJX5 Q9UJX5 333 346 ANAPC4 Anaphase-promoting complex subunit 4 yes yes 2 9.3617E-08 98.353 By MS/MS By MS/MS 2 1 0.84526 0.87098 4.62 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81075 0.88955 6.3025 2 0 Median 1.0042 0.87098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10484000 5571100 4913100 0 0 0 0 0 0 8043500 4439700 3603700 2440700 1131300 1309400 0 0 0 0 0 0 20125 4302 20985 105241;105242;105243 106762;106763;106764 106762 3 LGQVASSLFR NPDDGVRGSPPEDYRLGQVASSLFRGEHHS PEDYRLGQVASSLFRGEHHSRGGTGRLASL R L G F R G 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 1 0 0 10 0 1076.5978 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 35 44 RBM34 RNA-binding protein 34 yes no 2 0.00037764 110.87 By MS/MS 2 1.2504 1.2482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2504 1.2482 NaN 1 1 Median NaN NaN NaN 0 0 Median 10829000 4904700 5924300 0 0 0 0 0 0 0 0 0 0 0 0 10829000 4904700 5924300 0 0 0 20126 2314 20986 105244;105245 106765;106766 106766 2 LGSAGGTDFSMK EKDSIRIRALVGLCKLGSAGGTDFSMKQFA LCKLGSAGGTDFSMKQFAEGSTLKLAKQCR K L G M K Q 1 0 0 1 0 0 0 3 0 0 1 1 1 1 0 2 1 0 0 0 0 0 12 0 1169.5387 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 645 656 UNC45A Protein unc-45 homolog A yes no 2 0.011873 36.424 By MS/MS 1 1.4203 1.2596 NaN 1 Median NaN NaN NaN 0 0 Median 1.4203 1.2596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1729100 794740 934390 0 0 0 1729100 794740 934390 0 0 0 0 0 0 0 0 0 0 0 0 20127 335 20987 105246 106767 106767 1 LGSALSWSIR SICKILAMKAVRNNRLGSALSWSIRAKDAA VRNNRLGSALSWSIRAKDAAFATLVSDRFL R L G I R A 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 3 0 1 0 0 0 0 10 0 1088.5978 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7;J3QLD4 Q9BW27 483 492 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.00022687 128.36 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.3961 1.168 7.499 5 Median 1.0799 1.0797 NaN 1 0 Median 1.4531 1.2606 NaN 1 0 Median 1.0851 1.0973 NaN 1 0 Median 1.3961 1.168 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4934 1.2673 NaN 1 0 Median 30457000 13549000 16908000 2628900 1222500 1406400 3771100 1377600 2393600 22993000 10520000 12473000 965640 390800 574850 0 0 0 97610 37628 59982 20128 3861 20988 105247;105248;105249;105250;105251 106768;106769;106770;106771 106771 4 LGSAVVTR AHRSELKHAKRIVVKLGSAVVTRGDECGLA AKRIVVKLGSAVVTRGDECGLALGRLASIV K L G T R G 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 8 0 801.47085 P54886 P54886 77 84 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0024695 121.99 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1.4582 1.2606 12.642 7 Median 1.0638 1.04 NaN 1 0 Median 1.4582 1.2606 NaN 1 0 Median 1.3638 1.4413 11.7 2 0 Median 1.3646 1.1756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5719 1.2965 5.8352 2 0 Median 24862000 10143000 14719000 2800400 1380900 1419500 14095000 5369500 8725300 5715200 2435800 3279400 1419600 588380 831170 0 0 0 832130 368740 463380 20129 2488 20989 105252;105253;105254;105255;105256;105257;105258 106772;106773;106774;106775;106776;106777;106778 106776 7 LGSDMEDLR TQARVSKELQAAQARLGSDMEDLRNRLAQY QAAQARLGSDMEDLRNRLAQYRSEVQAMLG R L G L R N 0 1 0 2 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 9 0 1034.4703 CON__Q03247 CON__Q03247 121 129 yes yes 2 0.0010057 92.439 By MS/MS By MS/MS By MS/MS 1 1 3 0.036158 0.02976 31.525 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.028548 0.023813 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.045797 0.037191 NaN 1 1 Median 19108000 18657000 451030 0 0 0 0 0 0 0 0 0 5833300 5651000 182240 0 0 0 13275000 13006000 268790 + 20130 767 20990 105259;105260;105261;105262;105263 106779;106780;106781;106782;106783 106780 5 LGSDMEDLRNR TQARVSKELQAAQARLGSDMEDLRNRLAQY AQARLGSDMEDLRNRLAQYRSEVQAMLGQS R L G N R L 0 2 1 2 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 1 1304.6143 CON__Q03247 CON__Q03247 121 131 yes yes 3 0.018534 40.589 By MS/MS 1 0.15421 0.1646 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15421 0.1646 NaN 1 1 Median NaN NaN NaN 0 0 Median 3855100 3628800 226280 0 0 0 0 0 0 0 0 0 0 0 0 3855100 3628800 226280 0 0 0 + 20131 767 20991 105264 106784 106784 1 LGSESQYSPTPLLK IDAVFHGAVWPQISRLGSESQYSPTPLLKL RLGSESQYSPTPLLKLISIWSRNARYFPLL R L G L K L 0 0 0 0 0 1 1 1 0 0 3 1 0 0 2 3 1 0 1 0 0 0 14 0 1518.793 O75691 O75691 1191 1204 UTP20 Small subunit processome component 20 homolog yes yes 2 4.1375E-07 116.55 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 0.92741 0.86739 9.6399 7 Median NaN NaN NaN 0 0 Median 0.92573 0.8087 NaN 1 0 Median 0.8732 0.94946 6.5395 2 0 Median 0.96818 0.90202 5.536 2 0 Median 0.71416 0.74839 NaN 1 0 Median 0.96433 0.82653 NaN 1 0 Median 33635000 18387000 15248000 0 0 0 2524700 1358800 1165900 22274000 12037000 10237000 2211500 1092700 1118800 5424800 3270700 2154200 1200100 628050 572080 20132 1691 20992 105265;105266;105267;105268;105269;105270;105271 106785;106786;106787;106788;106789 106787 4 LGSFGSITR DPFPAVFGDFLGRERLGSFGSITRQQEGEA FLGRERLGSFGSITRQQEGEASSQDMTAQV R L G T R Q 0 1 0 0 0 0 0 2 0 1 1 0 0 1 0 2 1 0 0 0 0 0 9 0 936.50288 Q14315 Q14315 2231 2239 FLNC Filamin-C yes yes 2 0.00046491 123.98 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.1558 0.98076 16.412 7 Median 1.3495 1.2972 8.9245 2 0 Median 1.1646 0.95875 3.2098 2 0 Median 1.0425 1.1583 NaN 1 0 Median 1.0665 0.92866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0816 0.90351 NaN 1 0 Median 76264000 33774000 42490000 19136000 8159500 10977000 51025000 22686000 28339000 2533200 1313400 1219800 2308200 1041200 1267000 0 0 0 1261200 573020 688230 20133 2871 20993 105272;105273;105274;105275;105276;105277;105278 106790;106791;106792;106793;106794;106795;106796 106794 7 LGSFHELLLEPPKK ACSVNKSVLEAIRGRLGSFHELLLEPPKKS RLGSFHELLLEPPKKSVMKTTWGVLDPPVG R L G K K S 0 0 0 0 0 0 2 1 1 0 4 2 0 1 2 1 0 0 0 0 0 0 14 1 1606.9083 H7BXH2;E9PKF6;Q5H9R7 H7BXH2 313 326 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 3 0.024616 19.323 By MS/MS 1 0.63463 0.66679 NaN 1 Median 0.63463 0.66679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6604400 3931200 2673200 6604400 3931200 2673200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20134 946 20994 105279 106797 106797 1 LGSGPDGAEEIKR QSLLRALFKRNPANRLGSGPDGAEEIKRHV NRLGSGPDGAEEIKRHVFYSTIDWNKLYRR R L G K R H 1 1 0 1 0 0 2 3 0 1 1 1 0 0 1 1 0 0 0 0 0 0 13 1 1327.6732 E9PGT3;Q15418 E9PGT3 294 306 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 2;3 0.00012394 71.548 By MS/MS By MS/MS 1 2 1.0988 1.1018 10.485 3 Median 1.0198 1.0374 NaN 1 0 Median 1.1815 1.184 10.17 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3979600 1771400 2208200 1210000 630140 579870 2769500 1141200 1628300 0 0 0 0 0 0 0 0 0 0 0 0 20135 926 20995 105280;105281;105282 106798;106799;106800 106799 3 LGSIAEIDLGVPPPVMK DVHIMQHHVLPIQARLGSIAEIDLGVPPPV SIAEIDLGVPPPVMKTFKEFLLSLDDSVDE R L G M K T 1 0 0 1 0 0 1 2 0 2 2 1 1 0 3 1 0 0 0 2 0 0 17 0 1734.959 Q9BXP5;H7C0U8 Q9BXP5 134 150 SRRT Serrate RNA effector molecule homolog yes no 2 0.00035459 44.765 By matching By MS/MS 2 2 0.68984 0.67046 17.748 4 Median NaN NaN NaN 0 0 Median 0.82843 0.72981 14.109 2 0 Median 0.54923 0.59704 18.513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7028100 4159700 2868400 0 0 0 1715800 859400 856440 5312300 3300300 2012000 0 0 0 0 0 0 0 0 0 20136 3879 20996 105283;105284;105285;105286 106801;106802;106803 106801 3 LGSIAIQGAIEK IGSFLGSLSLLPATKLGSIAIQGAIEKAGI ATKLGSIAIQGAIEKAGIPKEEVKEAYMGN K L G E K A 2 0 0 0 0 1 1 2 0 3 1 1 0 0 0 1 0 0 0 0 0 0 12 0 1198.6921 P24752;H0YEL7;E9PRQ6 P24752 67 78 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 3.2326E-06 109.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 1 1.108 1.1307 14.965 8 Median 0.99237 0.96147 20.819 2 0 Median 1.4052 1.1977 NaN 1 0 Median 1.0021 1.0637 7.4862 3 0 Median 1.5067 1.2843 NaN 1 0 Median 1.3609 1.3148 NaN 1 0 Median NaN NaN NaN 0 0 Median 344530000 171450000 173080000 100450000 51816000 48629000 9974500 4008600 5965900 221720000 110820000 110900000 11764000 4531200 7232600 632820 277760 355050 0 0 0 20137 2126 20997 105287;105288;105289;105290;105291;105292;105293;105294 106804;106805;106806;106807;106808;106809;106810;106811;106812;106813;106814 106809 11 LGSIFGLGLAYAGSNR ALLSDYVLHNSNTMRLGSIFGLGLAYAGSN GSIFGLGLAYAGSNREDVLTLLLPVMGDSK R L G N R E 2 1 1 0 0 0 0 4 0 1 3 0 0 1 0 2 0 0 1 0 0 0 16 0 1594.8467 Q13200 Q13200 479 494 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 2.7511E-08 146.07 By MS/MS By MS/MS 1 1 1.0312 0.95845 18.388 2 Median 1.0925 1.0915 NaN 1 0 Median 0.97344 0.84159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16619000 8014400 8604400 1478500 684310 794210 15140000 7330100 7810200 0 0 0 0 0 0 0 0 0 0 0 0 20138 2796 20998 105295;105296 106815;106816;106817;106818 106817 4 LGSLEYDENTSIIFRPNSK FFNNVSKPSAPVFDRLGSLEYDENTSIIFR EYDENTSIIFRPNSKVNTDGLVLRGWYNCL R L G S K V 0 1 2 1 0 0 2 1 0 2 2 1 0 1 1 3 1 0 1 0 0 0 19 1 2182.0906 Q69YN4 Q69YN4 87 105 KIAA1429 Protein virilizer homolog yes yes 3 1.3944E-05 48.112 By MS/MS 1 0.79468 0.95303 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79468 0.95303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5195800 2837100 2358700 0 0 0 0 0 0 5195800 2837100 2358700 0 0 0 0 0 0 0 0 0 20139 3130 20999 105297 106819 106819 1 LGSLVDEFK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT R L G F K E 0 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1006.5335 P12956;B1AHC9 P12956 518 526 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 5 1 1.3052 1.1317 19.284 13 Median 1.1153 1.0476 NaN 1 0 Median 1.3528 1.1317 26.382 3 0 Median 1.0602 1.0322 8.1034 3 0 Median 1.4866 1.2643 10.962 5 0 Median NaN NaN NaN 0 0 Median 0.94225 0.78773 NaN 1 0 Median 150150000 67239000 82915000 11480000 5233400 6247000 16674000 6919800 9753800 96295000 44407000 51888000 25346000 10519000 14827000 0 0 0 359030 159770 199260 20140 1985 21000 105298;105299;105300;105301;105302;105303;105304;105305;105306;105307;105308;105309;105310 106820;106821;106822;106823;106824;106825;106826;106827;106828;106829 106821 10 LGSLVDEFKELVYPPDYNPEGK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP FKELVYPPDYNPEGKVTKRKHDNEGSGSKR R L G G K V 0 0 1 2 0 0 3 2 0 0 3 2 0 1 3 1 0 0 2 2 0 0 22 1 2508.2424 P12956;B1AHC9 P12956 518 539 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 5.7664E-08 61.181 By MS/MS By MS/MS By matching 2 2 1 0.67057 0.63707 13.364 5 Median 0.66641 0.62229 0.89779 2 2 Median 0.82898 0.7797 11.888 2 1 Median 0.55452 0.63707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49916000 28584000 21333000 45416000 26284000 19133000 3157800 1472100 1685700 1342500 828280 514190 0 0 0 0 0 0 0 0 0 20141 1985 21001 105311;105312;105313;105314;105315 106830;106831;106832;106833;106834 106830 5 LGSLVENNER EPTAQQNLALQLAEKLGSLVENNERVFDHK QLAEKLGSLVENNERVFDHKQGTYGGYFRD K L G E R V 0 1 2 0 0 0 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1129.5728 Q99613;B5ME19 Q99613 863 872 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 1.3976E-24 166.16 By MS/MS By MS/MS 3 1 0.97706 0.88197 12.501 2 Median 0.81598 0.80735 NaN 1 1 Median 1.1699 0.96348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51450000 21954000 29496000 1964500 933390 1031200 49486000 21021000 28465000 0 0 0 0 0 0 0 0 0 0 0 0 20142 3757 21002 105316;105317;105318;105319 106835;106836;106837;106838 106835 4 LGSPDSTSPSSSPTFWNYSR DTFLRSEEEKQHRVKLGSPDSTSPSSSPTF STSPSSSPTFWNYSRSMGDYAQTLKKFQYQ K L G S R S 0 1 1 1 0 0 0 1 0 0 1 0 0 1 3 7 2 1 1 0 0 0 20 0 2171.976 Q96SK2 Q96SK2 258 277 TMEM209 Transmembrane protein 209 yes yes 2 1.2653E-10 76.759 By MS/MS 2 0.64657 0.66156 5.1587 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64657 0.66156 5.1587 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12384000 7643100 4741300 0 0 0 0 0 0 12384000 7643100 4741300 0 0 0 0 0 0 0 0 0 20143 3735 21003 105320;105321 106839;106840 106840 2 LGSPDYGNSALLSLPGYRPTTR QASLRATSSTQSLARLGSPDYGNSALLSLP NSALLSLPGYRPTTRSSARRSQAGVSSGAP R L G T R S 1 2 1 1 0 0 0 3 0 0 4 0 0 0 3 3 2 0 2 0 0 0 22 1 2334.1968 A0A087WY61;Q14980 Q14980 1860 1881 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 2.4814E-23 111.95 By matching By MS/MS By matching By MS/MS By matching 1 3 3 4 2 0.61611 0.66508 15.505 13 Median 0.94195 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5675 0.67711 3.9179 3 1 Median 0.75335 0.68221 17.672 3 0 Median 0.57353 0.61894 4.6864 4 0 Median 0.7318 0.64296 13.936 2 0 Median 264760000 161910000 102840000 2863800 1425500 1438300 0 0 0 183350000 112110000 71239000 2914700 1534500 1380200 75084000 46543000 28540000 539180 292930 246250 20144 2905;77 21004 105322;105323;105324;105325;105326;105327;105328;105329;105330;105331;105332;105333;105334 106841;106842;106843;106844;106845;106846;106847;106848;106849;106850;106851;106852 106843 12 LGSSGLGSASSIQAAVR DDTRRANKKAKQTGRLGSSGLGSASSIQAA SSGLGSASSIQAAVRQLEAEADAIIQMVRE R L G V R Q 3 1 0 0 0 1 0 3 0 1 2 0 0 0 0 5 0 0 0 1 0 0 17 0 1559.8267 Q7Z6Z7;H0Y659 Q7Z6Z7 3750 3766 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 1.8628E-18 149.26 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.1485 1.0546 24.898 9 Median 0.89699 0.86734 12.881 3 0 Median 1.3002 1.1103 14.648 3 0 Median 1.1485 1.2159 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7672 1.8479 NaN 1 0 Median 1.1436 0.94017 NaN 1 0 Median 191710000 87575000 104140000 149130000 68940000 80193000 32386000 13849000 18537000 7917700 3768200 4149500 0 0 0 1723700 782560 941180 550250 234930 315320 20145 3253 21005 105335;105336;105337;105338;105339;105340;105341;105342;105343 106853;106854;106855;106856;106857;106858;106859;106860;106861;106862 106858 10 LGSSLDWDR WKEEKGDRIYHQLKKLGSSLDWDRACFTMD YHQLKKLGSSLDWDRACFTMDPKLSAAVTE K L G D R A 0 1 0 2 0 0 0 1 0 0 2 0 0 0 0 2 0 1 0 0 0 0 9 0 1047.4985 P26640;A0A140T936 P26640 434 442 VARS Valine--tRNA ligase yes no 2 0.0032184 66.621 By matching By matching By matching By MS/MS 1 1 1 1 1.2807 1.113 13.604 4 Median 1.4348 1.4062 NaN 1 0 Median 1.2058 1.0392 NaN 1 0 Median 0.97944 1.071 NaN 1 0 Median 1.3603 1.1567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9678700 4211200 5467500 2575900 946630 1629300 1609000 670550 938420 2171400 1213100 958380 3322400 1381000 1941400 0 0 0 0 0 0 20146 2148 21006 105344;105345;105346;105347 106863 106863 1 LGSSVLSNSIPPQSSTYR KTSQGTVPTALAFERLGSSVLSNSIPPQSS SVLSNSIPPQSSTYRSAQESAPHLLQPQFS R L G Y R S 0 1 1 0 0 1 0 1 0 1 2 0 0 0 2 6 1 0 1 1 0 0 18 0 1891.964 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 247 264 QSER1 Glutamine and serine-rich protein 1 yes no 2 0.00057329 53.252 By MS/MS 1 0.4981 0.55315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4981 0.55315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246400 1526000 720440 0 0 0 0 0 0 2246400 1526000 720440 0 0 0 0 0 0 0 0 0 20147 418 21007 105348 106864 106864 1 LGSTAPQVLSTSSPAQQAENEAK KPKGAFKAFTGEGQKLGSTAPQVLSTSSPA LSTSSPAQQAENEAKASSSILIDESEPTTN K L G A K A 4 0 1 0 0 3 2 1 0 0 2 1 0 0 2 4 2 0 0 1 0 0 23 0 2313.1448 Q9UNZ2 Q9UNZ2 260 282 NSFL1C NSFL1 cofactor p47 yes yes 2;3 3.7756E-29 120.3 By MS/MS By matching 4 1 0.75029 0.70047 15.267 5 Median 0.69325 0.64396 11.21 4 0 Median 0.93796 0.83294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38446000 22130000 16316000 37879000 21850000 16029000 566940 280470 286470 0 0 0 0 0 0 0 0 0 0 0 0 20148 4353 21008 105349;105350;105351;105352;105353 106865;106866;106867;106868 106868 4 LGSTEVASNVPK APGMNTIDQGMAALKLGSTEVASNVPKVVG ALKLGSTEVASNVPKVVGSAVGSGSITSNI K L G P K V 1 0 1 0 0 0 1 1 0 0 1 1 0 0 1 2 1 0 0 2 0 0 12 0 1200.635 Q9Y5A9;S4R3V3 Q9Y5A9 194 205 YTHDF2 YTH domain-containing family protein 2 yes no 2 0.00011953 90.149 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.92749 0.79399 13.752 5 Median 0.94547 0.89947 NaN 1 0 Median 0.92749 0.7769 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76678 0.65761 NaN 1 0 Median 0.88346 0.93049 NaN 1 0 Median 0.94338 0.79399 NaN 1 0 Median 24014000 11631000 12383000 6973900 3402500 3571400 11374000 5640600 5733800 0 0 0 1145400 589750 555700 3099500 1289600 1809900 1420400 708510 711850 20149 4454 21009 105354;105355;105356;105357;105358 106869;106870;106871 106871 3 LGSTVFVANLDYK PNIPNEIIHALQAGRLGSTVFVANLDYKVG GRLGSTVFVANLDYKVGWKKLKEVFSMAGV R L G Y K V 1 0 1 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 13 0 1425.7504 A0A087X0X3;P52272;M0R019;M0R2T0;M0QYQ7 A0A087X0X3 202 214 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 1.9029E-05 94.692 By MS/MS By matching By MS/MS By matching By MS/MS 3 2 5 2 5 1.0748 0.96522 23.509 17 Median 1.3782 1.3111 17.74 3 3 Median 1.0125 0.89023 7.3343 2 0 Median 1.1521 1.128 33.671 5 0 Median 1.1145 0.97587 2.3202 2 0 Median 0.90879 0.93701 9.2983 5 1 Median NaN NaN NaN 0 0 Median 267130000 135840000 131290000 31558000 14138000 17420000 1890300 960940 929340 100600000 51076000 49526000 3653500 1676900 1976600 129420000 67985000 61439000 0 0 0 20150 116 21010 105359;105360;105361;105362;105363;105364;105365;105366;105367;105368;105369;105370;105371;105372;105373;105374;105375 106872;106873;106874;106875;106876;106877;106878;106879;106880;106881;106882;106883;106884;106885;106886;106887;106888;106889;106890;106891;106892 106884 21 LGSTVVDLSVPGK IDGGQIGDGQSPECRLGSTVVDLSVPGKFG CRLGSTVVDLSVPGKFGIIRPGCALESTTA R L G G K F 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 2 1 0 0 3 0 0 13 0 1270.7133 Q86U90 Q86U90 236 248 YRDC YrdC domain-containing protein, mitochondrial yes yes 2 0.032002 44.309 By MS/MS 1 1.324 1.2316 NaN 1 Median 1.324 1.2316 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6735700 2977400 3758300 6735700 2977400 3758300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20151 3274 21011 105376 106893 106893 1 LGSVSLIPLR PSEPSRVSRAVPEVRLGSVSLIPLRGSENE VPEVRLGSVSLIPLRGSENEMRRSVAAFTA R L G L R G 0 1 0 0 0 0 0 1 0 1 3 0 0 0 1 2 0 0 0 1 0 0 10 0 1053.6546 E7EU13;Q96P48;A0A0A0MSJ2;F5GWQ2;H0YGD1 E7EU13 1161 1170 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 2 0.0045773 52.716 By MS/MS 1 0.87138 0.86699 NaN 1 Median 0.87138 0.86699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2410100 1137700 1272400 2410100 1137700 1272400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20152 893 21012 105377 106894 106894 1 LGSWLAIR KGEVFRVVDTLYNGKLGSWLAIRIGKNHKE DTLYNGKLGSWLAIRIGKNHKEVERGIIPN K L G I R I 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 0 1 0 0 0 0 8 0 914.53379 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 542 549 TJP1 Tight junction protein ZO-1 yes no 2 0.0021177 92.467 By MS/MS 1 1.0449 1.0931 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0449 1.0931 NaN 1 1 Median NaN NaN NaN 0 0 Median 4789700 2340700 2449100 0 0 0 0 0 0 0 0 0 0 0 0 4789700 2340700 2449100 0 0 0 20153 104 21013 105378 106895 106895 1 LGTEPTSETQDELQR PEMEDLPSKGVQEERLGTEPTSETQDELQR LGTEPTSETQDELQRLLGLLRDQDPLSEEQ R L G Q R L 0 1 0 1 0 2 3 1 0 0 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1702.801 O15381 O15381 516 530 NVL Nuclear valosin-containing protein-like yes yes 2 5.5315E-07 87.667 By MS/MS By MS/MS 1 1 0.88777 0.80935 7.5725 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83653 0.85387 NaN 1 1 Median 0.94215 0.76715 NaN 1 0 Median 11700000 6177400 5523000 0 0 0 0 0 0 0 0 0 0 0 0 10097000 5413900 4683100 1603400 763500 839880 20154 1542 21014 105379;105380 106896;106897;106898 106896 3 LGTGFSDEELEEHHQSLK ASYDEDSEELQAICKLGTGFSDEELEEHHQ GFSDEELEEHHQSLKALVLPSPRPYVRIDG K L G L K A 0 0 0 1 0 1 4 2 2 0 3 1 0 1 0 2 1 0 0 0 0 0 18 0 2054.9545 F5GZ28;P18858 F5GZ28 728 745 LIG1 DNA ligase;DNA ligase 1 yes no 4 0.00073727 32.181 By matching By MS/MS By matching 1 1 1 0.74177 0.80359 16.344 3 Median 0.7406 0.72611 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74177 0.80359 NaN 1 0 Median 1.1787 0.99977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11372000 6084400 5287600 4213300 2337600 1875700 0 0 0 5163600 2801100 2362600 1995000 945760 1049300 0 0 0 0 0 0 20155 1014 21015 105381;105382;105383 106899 106899 1 LGTIQSGSTTQFHAGMR ALTDYITRLEALQRRLGTIQSGSTTQFHAG TIQSGSTTQFHAGMRR______________ R L G M R R 1 1 0 0 0 2 0 3 1 1 1 0 1 1 0 2 3 0 0 0 0 0 17 0 1790.8734 A0A0A0MRF6;Q99996 A0A0A0MRF6 3893 3909 AKAP9 A-kinase anchor protein 9 yes no 3 1.4887E-07 87.932 By MS/MS By matching 1 2 0.75794 0.68906 13.706 2 Median 0.76487 0.75918 NaN 1 0 Median 0.75108 0.62541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13989000 6872500 7117000 6940900 3851800 3089200 7048600 3020700 4027900 0 0 0 0 0 0 0 0 0 0 0 0 20156 158 21016 105384;105385;105386 106900;106901 106901 2 LGTLEQEATADVEWR TEVGPRFELKLYMIRLGTLEQEATADVEWR LGTLEQEATADVEWRWHPYTNTARKRVFLS R L G W R W 2 1 0 1 0 1 3 1 0 0 2 0 0 0 0 0 2 1 0 1 0 0 15 0 1716.8319 E7ENR5;H0Y714;Q96G21 E7ENR5 205 219 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.00034364 55.426 By MS/MS By matching 1 1 0.92852 0.90099 28.479 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68968 0.73666 NaN 1 0 Median 1.2501 1.102 NaN 1 0 Median 1691800 954040 737740 0 0 0 0 0 0 0 0 0 0 0 0 1524500 870040 654460 167270 83999 83275 20157 865 21017 105387;105388 106902 106902 1 LGTLSALDILIK PILASFLRKNQRALKLGTLSALDILIKNYS ALKLGTLSALDILIKNYSDSLTAAMIDAVL K L G I K N 1 0 0 1 0 0 0 1 0 2 4 1 0 0 0 1 1 0 0 0 0 0 12 0 1255.7751 Q86VP6;A0A0C4DGH5 Q86VP6 668 679 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 6.1396E-05 94.309 By matching By MS/MS By MS/MS By matching By matching By matching 3 6 2 2 2 3 1.2755 1.122 23.153 18 Median 1.1309 1.0944 14.381 3 0 Median 1.2874 1.1066 8.8709 6 0 Median 0.97943 1.0405 11.191 2 0 Median 1.3016 1.1182 6.6825 2 0 Median 2.0011 2.0043 15.406 2 0 Median 1.4586 1.2137 22.139 3 0 Plateau 84379000 37000000 47379000 13389000 6156300 7233200 53218000 23245000 29973000 10159000 4848700 5310100 931800 401210 530590 5638800 1865200 3773600 1042000 483690 558350 20158 3288 21018 105389;105390;105391;105392;105393;105394;105395;105396;105397;105398;105399;105400;105401;105402;105403;105404;105405;105406 106903;106904;106905;106906 106905 4 LGTLSLPLPPAQTSDR KRRVSVAAGSEEDHKLGTLSLPLPPAQTSD GTLSLPLPPAQTSDRLAKRRKIT_______ K L G D R L 1 1 0 1 0 1 0 1 0 0 4 0 0 0 3 2 2 0 0 0 0 0 16 0 1664.9097 Q9GZS1 Q9GZS1 396 411 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2 1.3446E-06 80.763 By MS/MS 1 0.60674 0.60668 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60674 0.60668 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6053600 3855700 2197900 0 0 0 0 0 0 6053600 3855700 2197900 0 0 0 0 0 0 0 0 0 20159 3913 21019 105407 106907 106907 1 LGTLSPAFSTR FYIDYGNREVLPSTRLGTLSPAFSTRVLPA PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ R L G T R V 1 1 0 0 0 0 0 1 0 0 2 0 0 1 1 2 2 0 0 0 0 0 11 0 1148.619 Q7KZF4 Q7KZF4 777 787 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00014645 99.815 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1 1.1202 1.0688 39.09 10 Median 1.4657 1.3633 26.353 3 0 Median 1.1992 1.0213 13.15 2 0 Median 1.0739 1.1045 1.7218 2 0 Median 0.78681 0.65919 65.42 2 0 Median NaN NaN NaN 0 0 Median 0.61216 0.53699 NaN 1 0 Median 115780000 57673000 58107000 53091000 28151000 24940000 26108000 12384000 13724000 25639000 12487000 13152000 10202000 4214500 5987100 0 0 0 740170 435550 304620 20160 3214 21020 105408;105409;105410;105411;105412;105413;105414;105415;105416;105417 106908;106909;106910;106911;106912 106909 5 LGTNMYSVNQPVETHVSGSSK PKEGSFELYGDRVLKLGTNMYSVNQPVETH SVNQPVETHVSGSSKNLASWTQTSSANQAR K L G S K N 0 0 2 0 0 1 1 2 1 0 1 1 1 0 1 4 2 0 1 3 0 0 21 0 2234.0637 H7C0S2;C9JF58;Q8WVF1 H7C0S2 216 236 OSCP1 Protein OSCP1 yes no 3 0.00035982 27.61 By MS/MS 1 0.80183 0.74919 NaN 1 Median 0.80183 0.74919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7358800 4011600 3347300 7358800 4011600 3347300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20161 694 21021 105418 106913 106913 1 LGTNVESVLQAIIER VFDIPSDECIKISAKLGTNVESVLQAIIER LGTNVESVLQAIIERIPPPKVHRKNPLRAL K L G E R I 1 1 1 0 0 1 2 1 0 2 2 0 0 0 0 1 1 0 0 2 0 0 15 0 1640.9097 Q8N442 Q8N442 228 242 GUF1 Translation factor GUF1, mitochondrial yes yes 2 0.00073906 46.592 By matching By MS/MS 1 1 1.3236 1.2438 5.162 2 Median 1.1824 1.1992 NaN 1 0 Median 1.4817 1.29 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1970800 876540 1094200 1090100 512390 577730 880660 364150 516510 0 0 0 0 0 0 0 0 0 0 0 0 20162 3371 21022 105419;105420 106914 106914 1 LGTPALTSR TCPGDRSALRPSGLRLGTPALTSRGLLEKD RPSGLRLGTPALTSRGLLEKDFQKVAHFIH R L G S R G 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 2 0 0 0 0 0 9 0 914.51853 P34896 P34896 403 411 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 2 0.011103 47.603 By MS/MS By MS/MS By matching 1 1 1 0.95012 0.88484 5.991 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92707 0.92313 NaN 1 0 Median 0.97375 0.84814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2829600 1261100 1568500 0 0 0 0 0 0 1336700 641800 694890 1492900 619310 873590 0 0 0 0 0 0 20163 2227 21023 105421;105422;105423 106915;106916 106915 2 LGTPELSTAER TMRRVDPVYIHLAERLGTPELSTAERKELE LAERLGTPELSTAERKELENKLKEREEFLI R L G E R K 1 1 0 0 0 0 2 1 0 0 2 0 0 0 1 1 2 0 0 0 0 0 11 0 1172.6037 Q13085;Q59FY4 Q13085 2151 2161 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.0011704 60.518 By MS/MS 1 1.3501 1.1437 NaN 1 Median NaN NaN NaN 0 0 Median 1.3501 1.1437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2870700 1338900 1531800 0 0 0 2870700 1338900 1531800 0 0 0 0 0 0 0 0 0 0 0 0 20164 2784 21024 105424 106917;106918 106918 2 LGTPQQIAIAR ESKYAPLHLVPLIERLGTPQQIAIAREGDL LIERLGTPQQIAIAREGDLLTKERLCCGLS R L G A R E 2 1 0 0 0 2 0 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 11 0 1166.6772 E7EVJ5;H7C229;E7EW33;Q96F07;H0YL50;Q7L576 Q7L576 1066 1076 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.00016115 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.98913 0.88395 9.4437 5 Median 1.0235 0.98633 NaN 1 0 Median 0.98913 0.82663 NaN 1 0 Median 0.91017 1.0006 NaN 1 0 Median 1.0434 0.88395 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.98119 0.82075 NaN 1 0 Median 49898000 25002000 24896000 10059000 4895800 5163200 11306000 5845700 5460600 17249000 8662800 8585700 10627000 5286000 5341300 0 0 0 656800 311730 345070 20165 3224;897 21025 105425;105426;105427;105428;105429 106919;106920;106921;106922;106923 106920 5 LGTQEYLQQLESHMK KSCQAMFQQINDSFRLGTQEYLQQLESHMK LGTQEYLQQLESHMKSRKAREQEAREPVLA R L G M K S 0 0 0 0 0 3 2 1 1 0 3 1 1 0 0 1 1 0 1 0 0 0 15 0 1803.8825 Q6P2E9;I3L2F4 Q6P2E9 1143 1157 EDC4 Enhancer of mRNA-decapping protein 4 yes no 3 0.0010042 36.77 By matching By matching By MS/MS By matching 1 2 3 1 0.88768 0.91052 27.449 7 Median 1.247 1.2057 NaN 1 0 Median 1.4758 1.2991 10.507 2 0 Median 0.7601 0.80835 12.353 3 0 Median NaN NaN NaN 0 0 Median 0.88768 0.91052 NaN 1 0 Median NaN NaN NaN 0 0 Median 21237000 10248000 10989000 8542800 3499100 5043700 1066000 447590 618450 10564000 5828900 4735500 0 0 0 1063700 472450 591210 0 0 0 20166 3155 21026 105430;105431;105432;105433;105434;105435;105436 106924;106925 106924 2 LGTSAEGAHLR MTEDLLEEQSEVLAKLGTSAEGAHLRARMQ VLAKLGTSAEGAHLRARMQSACLLSDMESF K L G L R A 2 1 0 0 0 0 1 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1110.5782 Q15042 Q15042 661 671 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit yes yes 2 0.0068249 62.823 By MS/MS 1 0.90136 0.77293 NaN 1 Median NaN NaN NaN 0 0 Median 0.90136 0.77293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1993200 931640 1061600 0 0 0 1993200 931640 1061600 0 0 0 0 0 0 0 0 0 0 0 0 20167 2918 21027 105437 106926 106926 1 LGTSGLNQPTFQQSK LGLPAVNNDPFVQRKLGTSGLNQPTFQQSK LGTSGLNQPTFQQSKMKPSDLSQVWPEANQ K L G S K M 0 0 1 0 0 3 0 2 0 0 2 1 0 1 1 2 2 0 0 0 0 0 15 0 1604.8158 A5YKK6;H3BR89;H3BMH0 A5YKK6 809 823 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.00036103 58.676 By MS/MS By matching 1 1 1.0396 1.0342 1.0076 2 Median NaN NaN NaN 0 0 Median 1.1566 1.0268 NaN 1 0 Median 0.9345 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7196200 3503300 3692900 0 0 0 3592000 1691500 1900500 3604200 1811800 1792400 0 0 0 0 0 0 0 0 0 20168 503 21028 105438;105439 106927;106928 106928 2 LGTVYEK AKNAVEEYVYDFRDRLGTVYEKFITPEDLS YVYDFRDRLGTVYEKFITPEDLSKLSAVLE R L G E K F 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 808.43307 O95757;E9PDE8 O95757 635 641 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.01596 69.998 By MS/MS 1 1.283 1.1343 NaN 1 Median NaN NaN NaN 0 0 Median 1.283 1.1343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2121700 873960 1247800 0 0 0 2121700 873960 1247800 0 0 0 0 0 0 0 0 0 0 0 0 20169 1790 21029 105440 106929 106929 1 LGVAGQWR PMEINPEMLNKVLSRLGVAGQWRFVDVLGL LNKVLSRLGVAGQWRFVDVLGLEEESLGSV R L G W R F 1 1 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 8 0 885.48209 P09936;D6RE83;D6R956;D6R974;D6RF53 P09936 20 27 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2 8.6709E-06 163.34 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2554 1.1543 31.679 5 Median 1.6694 1.6079 46.87 2 1 Median 1.2751 1.0793 NaN 1 0 Median 1.2347 1.1857 NaN 1 0 Median 1.2554 1.0408 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 615580000 274730000 340850000 470270000 210480000 259800000 116010000 51815000 64190000 25967000 11102000 14865000 3331700 1337900 1993700 0 0 0 0 0 0 20170 1923 21030 105441;105442;105443;105444;105445;105446 106930;106931;106932;106933;106934;106935;106936;106937;106938 106930 9 LGVDLDAQTWR GGGLLENIPRVLPEKLGVDLDAQTWRIPRV LPEKLGVDLDAQTWRIPRVFSWLQQEGHLS K L G W R I 1 1 0 2 0 1 0 1 0 0 2 0 0 0 0 0 1 1 0 1 0 0 11 0 1272.6463 P22102 P22102 698 708 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.00070215 64.297 By MS/MS By matching 1 1 1.1968 1.081 5.1254 2 Median 1.1592 1.1209 NaN 1 0 Median 1.2357 1.0425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10013000 4489100 5523500 4841700 2226300 2615400 5170900 2262800 2908100 0 0 0 0 0 0 0 0 0 0 0 0 20171 2098 21031 105447;105448 106939;106940 106940 2 LGVEQLR YETRFLCNSSQEWKRLGVEQLRLSTVDMTG NSSQEWKRLGVEQLRLSTVDMTGIPTLDNL R L G L R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 813.47085 Q8WUK0 Q8WUK0 90 96 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes yes 2 0.0068092 97.068 By MS/MS 1 15.184 14.574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15.184 14.574 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68453000 4524600 63928000 0 0 0 0 0 0 68453000 4524600 63928000 0 0 0 0 0 0 0 0 0 20172 3491 21032 105449 106941 106941 1 LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK CNLDSARFRYLMGERLGVHPLSCHGWVLGE VPVWSGMNVAGVSLKTLHPDLGTDKDKEQW R L G L K T 1 0 1 1 1 0 1 6 3 0 4 1 1 0 2 5 0 2 0 6 0 0 35 0 3667.8028 P00338 P00338 178 212 LDHA L-lactate dehydrogenase A chain yes yes 4 2.1967E-68 116.39 By MS/MS 1 0.88399 0.74161 NaN 1 Median NaN NaN NaN 0 0 Median 0.88399 0.74161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119200 2690600 2428500 0 0 0 5119200 2690600 2428500 0 0 0 0 0 0 0 0 0 0 0 0 20173 1813 21033 105450 106942 106942 1 LGVIEDHSNR KYNDTFWKEFGTNIKLGVIEDHSNRTRLAK GTNIKLGVIEDHSNRTRLAKLLRFQSSHHP K L G N R T 0 1 1 1 0 0 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1138.5731 P14625;Q58FF3 P14625 494 503 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.00037374 101.64 By MS/MS 3 1.3795 1.1938 28.671 3 Plateau NaN NaN NaN 0 0 Median 1.3795 1.1938 28.671 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58030000 24052000 33978000 0 0 0 58030000 24052000 33978000 0 0 0 0 0 0 0 0 0 0 0 0 20174 2006 21034 105451;105452;105453 106943;106944;106945;106946;106947;106948;106949 106946 7 LGVIPNVEGR YKSRPVDPSVPFDSKLGVIPNVEGRVMDVP PFDSKLGVIPNVEGRVMDVPGLYCSGWVKR K L G G R V 0 1 1 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 0 2 0 0 10 0 1052.5978 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 377 386 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.00033784 98.033 By MS/MS By MS/MS 1 1 1.1601 1.0648 48.444 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77236 0.75595 NaN 1 0 Median 1.7425 1.4998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39394000 19339000 20056000 0 0 0 0 0 0 22497000 12564000 9933300 16897000 6775200 10122000 0 0 0 0 0 0 20175 2102 21035 105454;105455 106950;106951;106952;106953 106950 4 LGVLEADSAIR GRQVICVYTDDFTDRLGVLEADSAIRAAGI FTDRLGVLEADSAIRAAGIKCLLTYKPDVY R L G I R A 2 1 0 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1142.6295 Q9H3H3 Q9H3H3 224 234 C11orf68 UPF0696 protein C11orf68 yes yes 2 0.00019545 75.378 By MS/MS By MS/MS 1 2 1.3981 1.1633 17.392 3 Median 1.1904 1.1148 NaN 1 0 Median 1.6292 1.3365 19.635 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20179000 9229100 10950000 13457000 6289500 7167100 6722600 2939600 3783000 0 0 0 0 0 0 0 0 0 0 0 0 20176 3953 21036 105456;105457;105458 106954;106955 106954 2 LGVLHPDVITK GRCAEIFARGQSVGKLGVLHPDVITKFELT SVGKLGVLHPDVITKFELTMPCSSLEINVG K L G T K F 0 0 0 1 0 0 0 1 1 1 2 1 0 0 1 0 1 0 0 2 0 0 11 0 1190.7023 Q9NSD9 Q9NSD9 561 571 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.00068187 64.711 By MS/MS By MS/MS 1 1 1.1162 0.99495 1.7133 2 Median 1.0663 1.0071 NaN 1 0 Median 1.1683 0.98297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16900000 7876700 9023100 9278700 4304000 4974700 7621000 3572600 4048300 0 0 0 0 0 0 0 0 0 0 0 0 20177 4102 21037 105459;105460 106956;106957;106958 106956 3 LGVLYWK RPDPGRPVGLEQLRRLGVLYWKLDADKYEN VGLEQLRRLGVLYWKLDADKYENDPELEKI R L G W K L 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 0 1 1 1 0 0 7 0 877.50617 Q9BV57 Q9BV57 34 40 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes yes 2 0.01617 69.39 By MS/MS 1 1.1955 1.1274 NaN 1 Median 1.1955 1.1274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15683000 6990800 8691700 15683000 6990800 8691700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20178 3846 21038 105461 106959;106960 106959 2 LGVMTYSDTGK KIAKRMVTKFGMSEKLGVMTYSDTGKLSPE MSEKLGVMTYSDTGKLSPETQSAIEQEIRI K L G G K L 0 0 0 1 0 0 0 2 0 0 1 1 1 0 0 1 2 0 1 1 0 0 11 0 1170.5591 Q96I63;Q96TA2 Q96I63 698 708 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 0.00077434 62.823 By matching By MS/MS 1 1 1.3601 1.254 4.8813 2 Median 1.2097 1.2115 NaN 1 0 Median 1.5292 1.298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9962800 4360200 5602700 5023900 2511900 2512000 4938900 1848300 3090700 0 0 0 0 0 0 0 0 0 0 0 0 20179 3677 21039 105462;105463 106961 106961 1 LGVPFQVLVATHAGLYR PAEEFKAKVEAVVEKLGVPFQVLVATHAGL VPFQVLVATHAGLYRKPVTGMWDHLQEQAN K L G Y R K 2 1 0 0 0 1 0 2 1 0 3 0 0 1 1 0 1 0 1 3 0 0 17 0 1840.0359 M0QYH2;Q96T60;M0R3C8;A0A0D9SFD6 M0QYH2 243 259 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 3 0.00062103 35.757 By MS/MS By matching 1 1 0.87417 0.83904 20.789 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69573 0.72433 NaN 1 0 Median 1.0984 0.9719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3730000 1919300 1810600 0 0 0 0 0 0 3670600 1889100 1781400 59405 30176 29229 0 0 0 0 0 0 20180 1418 21040 105464;105465 106962;106963 106963 2 LGVPLPER TVQDGRQFLKYVDPKLGVPLPERDYGGNCL LKYVDPKLGVPLPERDYGGNCLIYDPDNET K L G E R D 0 1 0 0 0 0 1 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 8 0 879.5178 Q9BVG9;A0A0J9YWQ2 Q9BVG9 161 168 PTDSS2 Phosphatidylserine synthase 2 yes no 2 0.010576 58.604 By MS/MS By MS/MS 1 2 1.0765 1.007 8.2311 3 Median 1.037 1.0384 NaN 1 0 Median 1.129 0.94614 8.8218 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13496000 6349800 7146200 5105800 2897700 2208100 8390300 3452200 4938100 0 0 0 0 0 0 0 0 0 0 0 0 20181 3853 21041 105466;105467;105468 106964;106965 106964 2 LGVQDLFNSSK FKLEESYTLNSDLARLGVQDLFNSSKADLS DLARLGVQDLFNSSKADLSGMSGARDIFIS R L G S K A 0 0 1 1 0 1 0 1 0 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1206.6245 P30740 P30740 291 301 SERPINB1 Leukocyte elastase inhibitor yes yes 2 0.0013674 59.426 By MS/MS By MS/MS 1 1 1.0563 1.0634 20.217 2 Median 0.99625 0.92178 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1201 1.2269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16091000 8187000 7904100 13487000 6858900 6628500 0 0 0 2603700 1328100 1275600 0 0 0 0 0 0 0 0 0 20182 2197 21042 105469;105470 106966;106967;106968 106966 3 LGVQVVITDPEKLDQIR KIACLDFSLQKTKMKLGVQVVITDPEKLDQ VQVVITDPEKLDQIRQRESDITKERIQKIL K L G I R Q 0 1 0 2 0 2 1 1 0 2 2 1 0 0 1 0 1 0 0 3 0 0 17 1 1922.0837 P17987;E7ERF2;E7EQR6;F5H282;F5GZ03 P17987 248 264 TCP1 T-complex protein 1 subunit alpha yes no 2;3 1.4668E-23 137.16 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1.004 1.0708 20.465 9 Median 0.98017 0.98228 3.4431 2 1 Median 1.0809 0.9855 21.985 4 1 Median 0.99275 1.1154 5.7738 2 0 Median 1.7075 1.6023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94058000 45150000 48908000 37559000 17932000 19628000 23429000 10924000 12504000 32674000 16140000 16534000 395300 153970 241330 0 0 0 0 0 0 20183 2051 21043 105471;105472;105473;105474;105475;105476;105477;105478;105479 106969;106970;106971;106972;106973;106974 106971 6 LGVTANDVK TRLDHNRAKAQIALKLGVTANDVKNVIIWG AQIALKLGVTANDVKNVIIWGNHSSTQYPD K L G V K N 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 915.50255 P40925;B9A041;B8ZZ51;C9JF79 P40925 171 179 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase yes no 2 0.00064678 107.29 By MS/MS By MS/MS 1 1 1.2054 1.0506 7.8046 2 Median 1.096 0.99418 NaN 1 0 Median 1.3256 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68994000 31372000 37621000 34639000 16458000 18181000 34354000 14914000 19440000 0 0 0 0 0 0 0 0 0 0 0 0 20184 2291 21044 105480;105481 106975;106976;106977;106978 106976 4 LGVTNTIISHYDGR ANAERLKSVVGNLHRLGVTNTIISHYDGRQ RLGVTNTIISHYDGRQFPKVVGGFDRVLLD R L G G R Q 0 1 1 1 0 0 0 2 1 2 1 0 0 0 0 1 2 0 1 1 0 0 14 0 1544.7947 P46087 P46087 432 445 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 6.8757E-20 151.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 6 4 1.1602 1.0685 11.474 13 Median NaN NaN NaN 0 0 Median 1.2248 1.0471 NaN 1 0 Median 1.0755 1.1469 27.166 2 1 Median 1.3101 1.1162 NaN 1 0 Median 1.0685 1.0685 9.9221 5 2 Median 1.2961 1.1597 9.0056 4 0 Linear 106570000 55539000 51032000 0 0 0 2699800 1295300 1404500 17711000 8758500 8952600 1559900 663930 895920 80460000 43041000 37419000 4140100 1779900 2360200 20185 2338 21045 105482;105483;105484;105485;105486;105487;105488;105489;105490;105491;105492;105493;105494;105495 106979;106980;106981;106982;106983;106984;106985;106986;106987;106988;106989;106990 106987 12 LGVTVLSR HEREGWPNSPYGVSKLGVTVLSRILARRLD SPYGVSKLGVTVLSRILARRLDEKRKADRI K L G S R I 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 2 0 0 8 0 843.5178 O75828 O75828 199 206 CBR3 Carbonyl reductase [NADPH] 3 yes yes 2 0.0026718 126.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.2753 1.125 4.6204 7 Median 1.1984 1.1605 4.3862 2 0 Median 1.3534 1.1744 4.2481 3 0 Plateau 1.1519 1.0991 NaN 1 0 Median 1.2753 1.0646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140560000 63992000 76568000 107400000 49737000 57661000 27769000 11863000 15907000 3659100 1572400 2086700 1733000 819480 913470 0 0 0 0 0 0 20186 1699 21046 105496;105497;105498;105499;105500;105501;105502 106991;106992;106993;106994;106995;106996;106997;106998 106992 8 LGVTVLSRILAR HEREGWPNSPYGVSKLGVTVLSRILARRLD VSKLGVTVLSRILARRLDEKRKADRILVNA K L G A R R 1 2 0 0 0 0 0 1 0 1 3 0 0 0 0 1 1 0 0 2 0 0 12 1 1296.8242 O75828 O75828 199 210 CBR3 Carbonyl reductase [NADPH] 3 yes yes 3 0.046645 29.341 By MS/MS 1 38.106 38.019 NaN 1 Median 38.106 38.019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2255200 121590 2133700 2255200 121590 2133700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20187 1699 21047 105503 106999 106999 1 LGVVYFLQYIR ASPDAQVPVFLALCKLGVVYFLQYIRETNI ALCKLGVVYFLQYIRETNIRDMFTQLDMDQ K L G I R E 0 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 2 2 0 0 11 0 1369.7758 Q9UBV2 Q9UBV2 712 722 SEL1L Protein sel-1 homolog 1 yes yes 2 0.0086798 40.045 By matching By MS/MS 2 1 1.1413 1.1417 22.557 3 Median 1.2729 1.2794 16.102 2 0 Median 1.0414 0.91311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2402800 943970 1458800 815740 335490 480250 1587100 608480 978600 0 0 0 0 0 0 0 0 0 0 0 0 20188 4250 21048 105504;105505;105506 107000 107000 1 LGWDPKPGEGHLDALLR IQEFVKDVFSPIGERLGWDPKPGEGHLDAL WDPKPGEGHLDALLRGLVLGKLGKAGHKAT R L G L R G 1 1 0 2 0 0 1 3 1 0 4 1 0 0 2 0 0 1 0 0 0 0 17 1 1872.9846 E9PLK3;P55786 E9PLK3 686 702 NPEPPS Puromycin-sensitive aminopeptidase yes no 3 0.0092581 24.041 By MS/MS 1 0.76704 0.79874 NaN 1 Median 0.76704 0.79874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7747600 4226600 3520900 7747600 4226600 3520900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20189 960 21049 105507 107001 107001 1 LGWSQPLGNLQAPLGYDK FEITVDEMPPDTAARLGWSQPLGNLQAPLG SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQ R L G D K F 1 0 1 1 0 2 0 3 0 0 4 1 0 0 2 1 0 1 1 0 0 0 18 0 1956.0105 F5H8F7;Q9UBL3;H0YBF6 F5H8F7 299 316 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 1.1575E-05 62.258 By MS/MS 1 0.79402 0.83278 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79402 0.83278 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5551300 2951200 2600200 0 0 0 0 0 0 5551300 2951200 2600200 0 0 0 0 0 0 0 0 0 20190 1048 21050 105508 107002 107002 1 LGYAVYETPTAHNGAK KNYGMTRMDPYCRLRLGYAVYETPTAHNGA GYAVYETPTAHNGAKNPRWNKVIHCTVPPG R L G A K N 3 0 1 0 0 0 1 2 1 0 1 1 0 0 1 0 2 0 2 1 0 0 16 0 1690.8315 Q9H0E2;E7EN89;E9PP67;E9PQ25 Q9H0E2 81 96 TOLLIP Toll-interacting protein yes no 3 0.0006286 37.177 By MS/MS By matching 2 1 0.79048 0.74024 109.64 3 Median 0.29103 0.31629 120.25 2 0 Median 1.2427 1.0487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13156000 8769500 4386300 11525000 7935000 3589600 1631200 834440 796710 0 0 0 0 0 0 0 0 0 0 0 0 20191 3925 21051 105509;105510;105511 107003 107003 1 LGYEEHIPGQTR HAMDCVRAEDAYTSRLGYEEHIPGQTRDWN TSRLGYEEHIPGQTRDWNEELQTTRELPRK R L G T R D 0 1 0 0 0 1 2 2 1 1 1 0 0 0 1 0 1 0 1 0 0 0 12 0 1398.6892 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 344 355 CLUH Clustered mitochondria protein homolog yes no 3 0.0046989 34 By MS/MS 1 1.2083 1.15 NaN 1 Median 1.2083 1.15 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5377500 2579300 2798200 5377500 2579300 2798200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20192 1651 21052 105512 107004 107004 1 LGYFSVDPDSHQGK SVALAKPFDKFQFERLGYFSVDPDSHQGKL RLGYFSVDPDSHQGKLVFNRTVTLKEDPGK R L G G K L 0 0 0 2 0 1 0 2 1 0 1 1 0 1 1 2 0 0 1 1 0 0 14 0 1548.7209 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RR79 P47897 746 759 QARS Glutamine--tRNA ligase yes no 2;3 8.2179E-05 83.397 By MS/MS By matching 2 1 0.93271 0.90213 8.7089 3 Plateau 0.9875 0.90213 10.413 2 1 Median 0.93271 0.83231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19269000 9570700 9698800 18048000 8910500 9137500 1221400 660170 561280 0 0 0 0 0 0 0 0 0 0 0 0 20193 2356 21053 105513;105514;105515 107005;107006;107007 107005 3 LGYLVSPPQQIR ARPGGGRPGWEHSNKLGYLVSPPQQIRRGE SNKLGYLVSPPQQIRRGERSCYRSINRGRH K L G I R R 0 1 0 0 0 2 0 1 0 1 2 0 0 0 2 1 0 0 1 1 0 0 12 0 1369.7718 Q7Z6E9;A0A2R8Y880;H3BSK8 Q7Z6E9 511 522 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 2 0.00062047 66.692 By matching By MS/MS By matching 3 3 1 0.99231 0.93119 22.547 7 Median 0.99231 0.93119 14.743 3 0 Median NaN NaN NaN 0 0 Median 1.0585 1.1005 33.03 3 0 Median NaN NaN NaN 0 0 Median 0.72266 0.758 NaN 1 0 Median NaN NaN NaN 0 0 Median 105370000 52695000 52678000 68304000 34141000 34163000 0 0 0 34757000 17393000 17364000 0 0 0 2312300 1160600 1151700 0 0 0 20194 3251 21054 105516;105517;105518;105519;105520;105521;105522 107008;107009 107008 2 LGYPVLVR EAANSLEQAQAAAERLGYPVLVRAAFALGG AQAAAERLGYPVLVRAAFALGGLGSGFASN R L G V R A 0 1 0 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 1 2 0 0 8 0 915.55419 F8VPD4;P27708 F8VPD4 548 555 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0029333 103.29 By MS/MS 2 1.1191 1.0768 0.39742 2 Median 1.1191 1.0768 0.39742 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17482000 8172500 9309800 17482000 8172500 9309800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20195 1057 21055 105523;105524 107010;107011;107012;107013 107013 4 LGYTHLYSSTQVSVR PDVYGVFQFKVDYNRLGYTHLYSSTQVSVR LGYTHLYSSTQVSVRPLQHTQYERFIPSAY R L G V R P 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 3 2 0 2 2 0 0 15 0 1709.8737 P39656;A0A0C4DGS1 P39656 397 411 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 3 0.00010179 63.128 By matching By matching By MS/MS 1 1 1 1.4497 1.4502 7.6595 3 Median 1.4497 1.4502 NaN 1 0 Median 1.7588 1.5123 NaN 1 0 Median 1.2022 1.3035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11145000 4521200 6624200 2790600 1107700 1682900 2346700 946510 1400200 6008200 2467000 3541200 0 0 0 0 0 0 0 0 0 20196 253 21056 105525;105526;105527 107014;107015 107014 2 LGYTHLYSSTQVSVRPLQHTQYER PDVYGVFQFKVDYNRLGYTHLYSSTQVSVR TQVSVRPLQHTQYERFIPSAYPYYASAFSM R L G E R F 0 2 0 0 0 3 1 1 2 0 3 0 0 0 1 3 3 0 3 2 0 0 24 1 2862.4413 P39656;A0A0C4DGS1 P39656 397 420 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 3;4;5 7.6354E-24 102.45 By MS/MS By matching By MS/MS By matching 3 2 3 1 0.99526 0.9674 18.627 9 Median 0.90501 0.9674 10.303 3 0 Median 1.053 0.9834 2.9288 2 0 Median 0.90532 0.92789 28.088 3 1 Median 1.2675 1.1158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132880000 66617000 66262000 74927000 38026000 36901000 1748400 746250 1002200 54790000 27273000 27516000 1414000 571700 842250 0 0 0 0 0 0 20197 253 21057 105528;105529;105530;105531;105532;105533;105534;105535;105536 107016;107017;107018;107019;107020;107021;107022;107023 107018 8 LGYTPVCR TISHHDMYDYLHLSRLGYTPVCRALHSLLL DYLHLSRLGYTPVCRALHSLLLRLLAQDQG R L G C R A 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 8 0 964.48004 Q15102;M0R1K3 Q15102 199 206 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 0.026777 41.652 By MS/MS 1 0.78334 0.66628 NaN 1 Median NaN NaN NaN 0 0 Median 0.78334 0.66628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1283900 732310 551590 0 0 0 1283900 732310 551590 0 0 0 0 0 0 0 0 0 0 0 0 20198 2928 21058 105537 107024 107024 1 LHAEFAAER RFSFSPEPTLEDIRRLHAEFAAERDWEQFH LEDIRRLHAEFAAERDWEQFHQPRNLLLAL R L H E R D 3 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1042.5196 Q9H773 Q9H773 37 45 DCTPP1 dCTP pyrophosphatase 1 yes yes 2 0.003417 65.252 By MS/MS By MS/MS 1 1 1.1047 0.99927 6.5504 2 Median 1.0615 1.0466 NaN 1 0 Median 1.1497 0.95404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8762300 3962900 4799400 5725400 2579200 3146200 3036800 1383600 1653200 0 0 0 0 0 0 0 0 0 0 0 0 20199 3979 21059 105538;105539 107025;107026;107027;107028 107025 4 LHAELSEQIK KKKEQLQQEIEDWSKLHAELSEQIKSFEKS EDWSKLHAELSEQIKSFEKSQKDLEVALTH K L H I K S 1 0 0 0 0 1 2 0 1 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1166.6295 Q5JRA6;A0A0A0MRH6 Q5JRA6 1373 1382 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.00071176 97.565 By MS/MS By MS/MS By matching 2 1 1 1.1592 1.0948 4.228 4 Median 1.1445 1.0715 3.3484 2 0 Median 1.2305 1.0924 NaN 1 0 Median 1.173 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15349000 6844400 8504900 9315600 4206200 5109400 3593100 1472700 2120400 2440700 1165600 1275100 0 0 0 0 0 0 0 0 0 20200 3049 21060 105540;105541;105542;105543 107029;107030;107031 107031 3 LHAVLKPFLLR FDTKNCLGDQKLVERLHAVLKPFLLRRIKT LVERLHAVLKPFLLRRIKTDVEKSLPPKKE R L H L R R 1 1 0 0 0 0 0 0 1 0 4 1 0 1 1 0 0 0 0 1 0 0 11 1 1305.8285 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 387 397 SMARCA1 Probable global transcription activator SNF2L1 no no 2;3 7.0087E-05 75.109 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.82324 0.82478 10.992 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79844 0.90459 14.673 2 0 Median 0.79106 0.76022 NaN 1 0 Median 0.7993 0.89288 12.041 2 0 Median 0.94202 0.82958 NaN 1 0 Median 21665000 11847000 9818000 0 0 0 0 0 0 14225000 7900200 6325200 454490 255630 198870 6531200 3540500 2990700 454310 151040 303270 20201 167;643 21061 105544;105545;105546;105547;105548;105549 107032;107033;107034;107035;107036 107033 5 LHDAFFK KVRPKMGKIDIDYQKLHDAFFKWQTKPKLT KIDIDYQKLHDAFFKWQTKPKLTIHGDLYY K L H F K W 1 0 0 1 0 0 0 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 7 0 876.44939 Q13435;E9PPJ0 Q13435 571 577 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.014584 85.359 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.2504 1.0368 19.827 6 Median NaN NaN NaN 0 0 Median 1.0207 0.92054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4362 1.2392 NaN 1 0 Median 0.94575 0.97623 37.9 2 1 Median 1.2535 1.0368 1.8278 2 0 Median 39267000 17132000 22136000 0 0 0 806150 433110 373040 0 0 0 4545600 1932400 2613200 26193000 11059000 15133000 7723000 3706700 4016400 20202 2817 21062 105550;105551;105552;105553;105554;105555 107037;107038;107039;107040 107040 4 LHDEKEETAGSYDSR FGAEGLASLLDILKRLHDEKEETAGSYDSR LHDEKEETAGSYDSRNKHEIIRCLKAFMNN R L H S R N 1 1 0 2 0 0 3 1 1 0 1 1 0 0 0 2 1 0 1 0 0 0 15 1 1735.7649 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28;A0A2R8YEF8 A0A0G2JH68 198 212 DIAPH1 Protein diaphanous homolog 1 yes no 3 0.00012067 61.732 By matching By MS/MS By matching By matching 2 1 1 1 1.0327 1.1008 5.8308 5 Median 1.0259 1.0538 1.4083 2 0 Median 1.2834 1.2142 NaN 1 0 Median 0.9598 1.1008 NaN 1 0 Median 1.1479 1.1082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4245800 1971700 2274100 1192900 627980 564940 2406600 1059800 1346800 430100 197420 232680 216230 86515 129710 0 0 0 0 0 0 20203 274 21063 105556;105557;105558;105559;105560 107041;107042 107042 2 LHDELEEAKDK QKELEAASAPEERTRLHDELEEAKDKARRR ERTRLHDELEEAKDKARRRSIGNIKFIGEL R L H D K A 1 0 0 2 0 0 3 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 11 1 1325.6463 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1063 1073 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 3 0.00019369 66.267 By matching By MS/MS By matching 1 2 2 1.0235 1.0151 10.045 5 Median 1.0195 1.0639 NaN 1 0 Median 0.99481 0.95126 7.0812 2 0 Median NaN NaN NaN 0 0 Median 1.1691 1.1002 11.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3825600 1829500 1996100 630220 297040 333190 2697700 1294400 1403300 0 0 0 497630 237980 259650 0 0 0 0 0 0 20204 300 21064 105561;105562;105563;105564;105565 107043;107044 107044 2 LHDETLTYLNQGQSYEIR PFQYVLCAATSPAVKLHDETLTYLNQGQSY ETLTYLNQGQSYEIRMLDNRKLGELPEING K L H I R M 0 1 1 1 0 2 2 1 1 1 3 0 0 0 0 1 2 0 2 0 0 0 18 0 2179.0546 Q12800;F8VX55;Q9NZI7;C9JWL3 Q12800 81 98 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 no no 2;3 7.2058E-19 169.62 By MS/MS By MS/MS 4 4 1.1287 1.0458 16.269 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0656 1.0624 20.964 4 0 Median 1.207 1.0287 12.094 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 181590000 85113000 96472000 0 0 0 0 0 0 170150000 80058000 90087000 11439000 5054800 6384600 0 0 0 0 0 0 20205 2760;4187 21065 105566;105567;105568;105569;105570;105571;105572;105573 107045;107046;107047;107048;107049;107050;107051;107052;107053;107054;107055;107056;107057 107050 13 LHDFGYR YLLETSGNLDGLEYKLHDFGYRGVSSQETA NLDGLEYKLHDFGYRGVSSQETAGIGASAH K L H Y R G 0 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 7 0 906.4348 P43490;A0A0C4DFS8 P43490 190 196 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.050156 40.103 By MS/MS By matching 1 1 1.0221 0.94219 18.629 2 Median 1.079 1.0748 NaN 1 0 Median 0.96828 0.82591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7087900 3393400 3694500 3578000 1724200 1853800 3509900 1669200 1840700 0 0 0 0 0 0 0 0 0 0 0 0 20206 2326 21066 105574;105575 107058 107058 1 LHDFQDEIVENSVTK LADDLKAQLELAQKKLHDFQDEIVENSVTK LHDFQDEIVENSVTKEKDMFNFKRAQEDIS K L H T K E 0 0 1 2 0 1 2 0 1 1 1 1 0 1 0 1 1 0 0 2 0 0 15 0 1772.8581 Q5VTR2 Q5VTR2 858 872 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 9.8954E-06 77.562 By MS/MS By MS/MS 1 1 0.76291 0.73237 71.107 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1335 1.2109 NaN 1 0 Median 0.51346 0.44296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16173000 8905600 7267300 0 0 0 0 0 0 11675000 5567400 6107800 4497800 3338300 1159500 0 0 0 0 0 0 20207 3112 21067 105576;105577 107059;107060 107060 2 LHDINAQLVEDQGFLDTLK EDPYVRKTAAVCVAKLHDINAQLVEDQGFL NAQLVEDQGFLDTLKDLISDSNPMVVANAV K L H L K D 1 0 1 3 0 2 1 1 1 1 4 1 0 1 0 0 1 0 0 1 0 0 19 0 2168.1113 Q10567;C9J1E7 Q10567 148 166 AP1B1 AP-1 complex subunit beta-1 yes no 3 0.0035099 25.508 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.183 1.0795 9.1332 5 Median 1.0429 1.0561 NaN 1 0 Median 1.2049 1.0489 4.0573 2 0 Median 1.1218 1.213 NaN 1 0 Median 1.424 1.257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10474000 4478200 5996000 948840 460640 488200 6889300 2982100 3907300 2536000 1000400 1535600 100040 35125 64912 0 0 0 0 0 0 20208 2752 21068 105578;105579;105580;105581;105582 107061;107062;107063 107063 3 LHDINAQMVEDQGFLDSLR EDPYVRKTAAVCVAKLHDINAQMVEDQGFL NAQMVEDQGFLDSLRDLIADSNPMVVANAV K L H L R D 1 1 1 3 0 2 1 1 1 1 3 0 1 1 0 1 0 0 0 1 0 0 19 0 2200.0583 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 110 128 AP2B1 AP-2 complex subunit beta yes no 3 3.4671E-21 161.86 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 3 2 1 1.1428 1.122 12.084 9 Median 1.1257 1.1117 NaN 1 0 Median 1.1176 0.97787 1.5408 2 0 Median 1.1232 1.2518 7.2316 3 0 Plateau 1.353 1.1519 8.9231 2 0 Median 1.3037 1.3849 NaN 1 0 Median NaN NaN NaN 0 0 Median 19222000 8620700 10601000 2096900 929440 1167400 6331100 2737200 3593800 9585000 4430500 5154500 419090 177670 241420 789520 345910 443610 0 0 0 20209 128 21069;21070 105583;105584;105585;105586;105587;105588;105589;105590;105591 107064;107065;107066;107067;107068;107069;107070;107071;107072 107071 67 9 LHDLLGPHMLR LEEFADISKEDQIKKLHDLLGPHMLRRLKA QIKKLHDLLGPHMLRRLKADVFKNMPAKTE K L H L R R 0 1 0 1 0 0 0 1 2 0 4 0 1 0 1 0 0 0 0 0 0 0 11 0 1300.7074 Q8TDI0;K7EMY3;F2Z2R5;Q12873 Q8TDI0 920 930 CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 3 0.0056598 34.773 By MS/MS 2 1.0196 1.0801 26.258 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0196 1.0801 26.258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4811800 2407800 2404000 0 0 0 0 0 0 4811800 2407800 2404000 0 0 0 0 0 0 0 0 0 20210 3471;2766 21071 105592;105593 107073 107073 1 LHDLVLPLVMGVQQGEVLGSSPYTSSR ILMCGPLIKEETHRRLHDLVLPLVMGVQQG QQGEVLGSSPYTSSRCRRELYCLLLALLLA R L H S R C 0 1 0 1 0 2 1 3 1 0 5 0 1 0 2 4 1 0 1 4 0 0 27 0 2881.5008 Q8IZL8;C9JFV4 Q8IZL8 548 574 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 3 3.2095E-05 31.17 By matching By MS/MS 1 2 0.70653 0.75658 10.316 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70653 0.77723 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67398 0.69713 11.575 2 0 Median NaN NaN NaN 0 0 Median 7097900 4282400 2815500 0 0 0 0 0 0 4480800 2628700 1852100 0 0 0 2617100 1653700 963350 0 0 0 20211 3351 21072 105594;105595;105596 107074;107075 107074 2 LHDLYWQAMK QQSLQQGAHSTGSSRLHDLYWQAMKTLGVQ TGSSRLHDLYWQAMKTLGVQRPKLEKKDAK R L H M K T 1 0 0 1 0 1 0 0 1 0 2 1 1 0 0 0 0 1 1 0 0 0 10 0 1303.6383 Q9BQG0;I3L1L3 Q9BQG0 1131 1140 MYBBP1A Myb-binding protein 1A yes no 2;3 0.00035803 107.01 By matching By MS/MS By matching By MS/MS By matching 1 2 2 2 3 1.1502 1.1742 15.499 10 Median NaN NaN NaN 0 0 Median 1.3519 1.156 NaN 1 0 Median 1.1359 1.2097 1.9945 2 0 Median 1.2122 1.0536 34.37 2 0 Median 1.0205 1.0595 17.684 2 0 Median 1.348 1.1288 14.022 3 0 Median 79417000 36242000 43176000 0 0 0 1227400 486350 741010 59769000 27481000 32288000 1044800 398460 646330 14772000 6704800 8067200 2603900 1171400 1432500 20212 3789 21073 105597;105598;105599;105600;105601;105602;105603;105604;105605;105606 107076;107077;107078;107079;107080;107081 107080 6 LHDMLGPHMLR LEEFADIAKEDQIKKLHDMLGPHMLRRLKA QIKKLHDMLGPHMLRRLKADVFKNMPSKTE K L H L R R 0 1 0 1 0 0 0 1 2 0 3 0 2 0 1 0 0 0 0 0 0 0 11 0 1318.6638 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 946 956 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 3.0391E-05 123.96 By MS/MS By MS/MS 3 1 0.95045 1.0131 11.617 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93851 1.023 13.962 3 0 Median NaN NaN NaN 0 0 Median 0.96255 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median 44952000 23894000 21057000 0 0 0 0 0 0 39198000 20848000 18351000 0 0 0 5753100 3046500 2706700 0 0 0 20213 246 21074;21075 105607;105608;105609;105610 107082;107083;107084;107085;107086 107084 103 5 LHDNPLTDENKEHEADTANMSDK FYFKAARIAIEIYLKLHDNPLTDENKEHEA ENKEHEADTANMSDKELKKLRNKQRRAQKK K L H D K E 2 0 3 4 0 0 3 0 2 0 2 2 1 0 1 1 2 0 0 0 0 0 23 1 2623.1456 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 568 590 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 3;4 8.6034E-18 75.646 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.91162 0.95054 6.8342 5 Median 0.91162 0.95784 NaN 1 0 Median 0.96281 0.93193 NaN 1 0 Median 0.9058 1.0341 NaN 1 0 Median 0.92249 0.90118 7.5414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33865000 14907000 18958000 6581600 3132600 3449000 5193800 2304800 2889000 10916000 4820400 6095600 11173000 4648900 6524200 0 0 0 0 0 0 20214 213 21076 105611;105612;105613;105614;105615 107087;107088;107089;107090;107091;107092;107093;107094;107095 107091 9 LHDPEGMGIIPR YGQTSSGKTHTMEGKLHDPEGMGIIPRIVQ EGKLHDPEGMGIIPRIVQDIFNYIYSMDEN K L H P R I 0 1 0 1 0 0 1 2 1 2 1 0 1 0 2 0 0 0 0 0 0 0 12 0 1333.6813 P33176 P33176 99 110 KIF5B Kinesin-1 heavy chain yes yes 2;3 3.3351E-32 158.87 By MS/MS By MS/MS By matching 2 3 1 1.0914 1.1064 48.787 4 Median 0.743 0.71565 NaN 1 0 Median 1.0914 1.1064 45.761 2 0 Median 1.5623 1.9463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21330000 10569000 10761000 13267000 7056600 6210900 5472300 2581400 2890900 2590400 931430 1659000 0 0 0 0 0 0 0 0 0 20215 2221 21077 105616;105617;105618;105619;105620;105621 107096;107097;107098;107099;107100;107101 107098 6 LHDSLAIER SGTLVMDAYEPEISRLHDSLAIERKIK___ EPEISRLHDSLAIERKIK____________ R L H E R K 1 1 0 1 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1052.5615 A0A087WUC6;E9PI68;Q15005;E9PL01;E9PRB9 A0A087WUC6 216 224 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.00012512 145.16 By MS/MS By MS/MS By MS/MS 2 2 1 1.106 1.119 40.093 5 Median 1.0978 1.0733 5.8938 2 1 Median 0.8901 0.73651 63.835 2 0 Median 1.2946 1.2439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33765000 14994000 18770000 8113700 3116100 4997600 15205000 7490900 7713600 10446000 4387400 6059100 0 0 0 0 0 0 0 0 0 20216 29 21078 105622;105623;105624;105625;105626 107102;107103;107104;107105;107106 107104 4 LHDSSGSQVGTGFK IAEAPSAFTLGSEMKLHDSSGSQVGTGFKS KLHDSSGSQVGTGFKSNFSEKASKFGNTEQ K L H F K S 0 0 0 1 0 1 0 3 1 0 1 1 0 1 0 3 1 0 0 1 0 0 14 0 1418.679 P49792 P49792 1829 1842 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 0.00034786 57.434 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 4 3 1 1 1.148 1.1305 23.459 12 Median 0.94652 0.9087 NaN 1 0 Median 1.4283 1.2481 9.5936 2 0 Median 1.0535 1.1164 3.8721 4 0 Linear 1.2669 1.1439 22.28 3 1 Median 2.0269 2.1317 NaN 1 0 Median 1.2687 1.0873 NaN 1 0 Median 25829000 11877000 13952000 570070 315890 254190 3544000 1443200 2100800 15708000 7616800 8090700 3055000 1479600 1575400 1373300 423100 950240 1579500 598410 981100 20217 2401 21079 105627;105628;105629;105630;105631;105632;105633;105634;105635;105636;105637;105638 107107;107108;107109;107110;107111;107112;107113;107114;107115;107116;107117;107118;107119;107120 107114 14 LHDVNSDGFLDEQELEALFTK DGLDPNDFDPKTFFKLHDVNSDGFLDEQEL DGFLDEQELEALFTKELEKVYDPKNEEDDM K L H T K E 1 0 1 3 0 1 3 1 1 0 4 1 0 2 0 1 1 0 0 1 0 0 21 0 2419.1543 E9PKG6;P80303;Q2L696;H0YEG8 E9PKG6 252 272 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 yes no 3 4.1742E-12 72.644 By matching By MS/MS 1 1 0.92547 0.84978 29.048 2 Median 0.70214 0.69199 NaN 1 0 Median 1.2198 1.0435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108900 1384400 1724500 348900 187960 160940 2760000 1196400 1563500 0 0 0 0 0 0 0 0 0 0 0 0 20218 948 21080 105639;105640 107121;107122 107122 2 LHEEEPPQNMKPQSGNDKPLSK YRPPALRNKPITNSKLHEEEPPQNMKPQSG QNMKPQSGNDKPLSKTALKNQRKHEAKKAA K L H S K T 0 0 2 1 0 2 3 1 1 0 2 3 1 0 4 2 0 0 0 0 0 0 22 2 2502.2173 Q9BY44;F8WAE5;H7C5R5 Q9BY44 461 482 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 4 0.04413 10.989 By MS/MS By matching 1 1 0.523 0.49492 11.046 2 Median 0.44856 0.45773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6098 0.53513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2761300 1805400 955840 2222000 1461700 760280 0 0 0 0 0 0 539290 343740 195550 0 0 0 0 0 0 20219 3886 21081 105641;105642 107123 107123 1 LHEEGIIYR MDPKLSAAVTEAFVRLHEEGIIYRSTRLVN TEAFVRLHEEGIIYRSTRLVNWSCTLNSAI R L H Y R S 0 1 0 0 0 0 2 1 1 2 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1128.5928 P26640;A0A140T936 P26640 462 470 VARS Valine--tRNA ligase yes no 2 0.034001 35.295 By MS/MS By matching 1 1 1.6647 1.4142 23.892 2 Median NaN NaN NaN 0 0 Median 1.9988 1.6745 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3865 1.1944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10116000 3043900 7071700 0 0 0 8845800 2414500 6431300 0 0 0 1269700 629360 640350 0 0 0 0 0 0 20220 2148 21082 105643;105644 107124 107124 1 LHEKVNIIPLIAK SGHGLKPLDIEFMKRLHEKVNIIPLIAKAD KRLHEKVNIIPLIAKADTLTPEECQQFKKQ R L H A K A 1 0 1 0 0 0 1 0 1 3 2 2 0 0 1 0 0 0 0 1 0 0 13 1 1486.9235 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1 E7ES33 163 175 SEPT7 Septin-7 yes no 3 0.024092 22.989 By MS/MS 1 1.227 1.1655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.227 1.1655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8025300 3344300 4681000 0 0 0 0 0 0 0 0 0 8025300 3344300 4681000 0 0 0 0 0 0 20221 870 21083 105645 107125 107125 1 LHELNQKWEALK MVEEGHFAAEDVKAKLHELNQKWEALKAKA KAKLHELNQKWEALKAKASQRRQDLEDSLQ K L H L K A 1 0 1 0 0 1 2 0 1 0 3 2 0 0 0 0 0 1 0 0 0 0 12 1 1507.8147 A0A0D9SF54;Q13813 Q13813 865 876 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00014201 78.548 By MS/MS By matching By MS/MS By matching 1 1 2 2 1.1163 1.1303 118.13 6 Median 1.1773 1.1587 NaN 1 1 Median 1.1749 1.12 NaN 1 0 Median 0.4734 0.54545 67.895 2 0 Median NaN NaN NaN 0 0 Median 3.4288 3.7065 166.66 2 0 Median NaN NaN NaN 0 0 Median 50085000 22517000 27568000 5185700 2103000 3082700 6296100 2777500 3518600 21229000 12934000 8295300 0 0 0 17374000 4702700 12672000 0 0 0 20222 264;2838 21084 105646;105647;105648;105649;105650;105651 107126;107127;107128 107127 3 LHELPVPKPR NLVEQAGSSSLVNGRLHELPVPKPRGTPKP LVNGRLHELPVPKPRGTPKPSEGTPAPRKD R L H P R G 0 1 0 0 0 0 1 0 1 0 2 1 0 0 3 0 0 0 0 1 0 0 10 1 1184.703 Q8N3F8 Q8N3F8 344 353 MICALL1 MICAL-like protein 1 yes yes 3 0.056109 26.043 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 789780 0 789780 0 0 0 0 0 0 0 0 0 789780 0 789780 0 0 0 0 0 0 20223 3367 21085 105652 107129 107129 1 LHELTVMQDR EHEKLKATDQEKSRKLHELTVMQDRREQAR EKSRKLHELTVMQDRREQARQDLKGLEETV K L H D R R 0 1 0 1 0 1 1 0 1 0 2 0 1 0 0 0 1 0 0 1 0 0 10 0 1240.6234 P33176 P33176 765 774 KIF5B Kinesin-1 heavy chain yes yes 2 0.036879 50.04 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20224 2221 21086 105653 107130 107130 1 LHELTVMQDRR EHEKLKATDQEKSRKLHELTVMQDRREQAR KSRKLHELTVMQDRREQARQDLKGLEETVA K L H R R E 0 2 0 1 0 1 1 0 1 0 2 0 1 0 0 0 1 0 0 1 0 0 11 1 1396.7245 P33176 P33176 765 775 KIF5B Kinesin-1 heavy chain yes yes 3 0.024996 27.481 By MS/MS 1 1.1483 1.2758 NaN 1 Median 1.1483 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1701700 745790 955890 1701700 745790 955890 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20225 2221 21087 105654 107131 107131 0 LHENLEEMK TLSKLEIENLNLAQKLHENLEEMKSVMKER LNLAQKLHENLEEMKSVMKERDNLRRVEET K L H M K S 0 0 1 0 0 0 3 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1141.5438 Q02224;A0A087X0P0 Q02224 1877 1885 CENPE Centromere-associated protein E;Kinesin-like protein yes no 2 0.0053629 57.859 By MS/MS 1 0.83643 0.73623 NaN 1 Median NaN NaN NaN 0 0 Median 0.83643 0.73623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1640100 879490 760630 0 0 0 1640100 879490 760630 0 0 0 0 0 0 0 0 0 0 0 0 20226 107 21088 105655 107132 107132 1 LHESYGNPLR RNEDMSAYVKKIQFKLHESYGNPLRVVTKP KIQFKLHESYGNPLRVVTKPPYEITETGWG K L H L R V 0 1 1 0 0 0 1 1 1 0 2 0 0 0 1 1 0 0 1 0 0 0 10 0 1184.5938 O95619;F8W1B9;F8VTR4 O95619 70 79 YEATS4 YEATS domain-containing protein 4 yes no 2 5.0616E-05 136.11 By MS/MS By MS/MS By MS/MS 1 2 1 0.9092 0.87374 27.759 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9092 0.87374 NaN 1 0 Median 0.67084 0.55501 NaN 1 1 Median 0.92671 0.91863 NaN 1 0 Median NaN NaN NaN 0 0 Median 13456000 7076100 6380200 0 0 0 0 0 0 7874000 4036100 3837900 1692000 1023500 668530 3890300 2016500 1873800 0 0 0 20227 1783 21089 105656;105657;105658;105659 107133;107134;107135;107136;107137 107134 5 LHETVDATSETHIYQVR CRAFGGKDIKVYMPKLHETVDATSETHIYQ ETVDATSETHIYQVRLKDSLVSSLQFCKAK K L H V R L 1 1 0 1 0 1 2 0 2 1 1 0 0 0 0 1 3 0 1 2 0 0 17 0 1997.9807 Q9P2I0;H0YJF4 Q9P2I0 593 609 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes no 3;4 2.1737E-25 191.96 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 2 0.99166 0.94384 39.826 8 Median 0.34535 0.37594 NaN 1 0 Median 1.0737 0.85926 NaN 1 0 Median 0.89283 0.94384 3.6412 2 0 Median 1.3484 1.1622 3.974 2 0 Median 1.0584 1.1119 34.637 2 0 Median NaN NaN NaN 0 0 Median 139210000 72778000 66431000 26719000 19539000 7179700 20859000 9374500 11485000 63195000 31261000 31934000 20224000 8138600 12086000 8211500 4464200 3747300 0 0 0 20228 4223 21090 105660;105661;105662;105663;105664;105665;105666;105667 107138;107139;107140;107141;107142;107143 107142 6 LHEWTKPENLDFIEVNVSLPR STGLKKIEEQLTLEKLHEWTKPENLDFIEV PENLDFIEVNVSLPRFKLEESYTLNSDLAR K L H P R F 0 1 2 1 0 0 3 0 1 1 3 1 0 1 2 1 1 1 0 2 0 0 21 1 2535.3122 P30740 P30740 255 275 SERPINB1 Leukocyte elastase inhibitor yes yes 3 3.9716E-05 55.007 By MS/MS 1 0.84287 0.79097 NaN 1 Median NaN NaN NaN 0 0 Median 0.84287 0.79097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3717400 2145400 1572000 0 0 0 3717400 2145400 1572000 0 0 0 0 0 0 0 0 0 0 0 0 20229 2197 21091 105668 107144 107144 1 LHFFMPGFAPLTAR ADLRKLAVNMVPFPRLHFFMPGFAPLTARG RLHFFMPGFAPLTARGSQQYRALTVPELTQ R L H A R G 2 1 0 0 0 0 0 1 1 0 2 0 1 3 2 0 1 0 0 0 0 0 14 0 1603.8333 A0A0B4J269;Q13509 A0A0B4J269 610 623 TUBB3 Tubulin beta-3 chain yes no 2 0.015251 45.973 By MS/MS 1 0.71268 0.7111 NaN 1 Median 0.71268 0.7111 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2268700 1221100 1047600 2268700 1221100 1047600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20230 216 21092 105669 107145 107145 1 LHFFMPGFAPLTSR ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG RLHFFMPGFAPLTSRGSQQYRALTVPELTQ R L H S R G 1 1 0 0 0 0 0 1 1 0 2 0 1 3 2 1 1 0 0 0 0 0 14 0 1619.8283 P04350;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 263 276 TUBB4A;TUBB;TUBB8;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2;3 7.6107E-07 141.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 18 10 14 6 12 11 0.9036 0.83987 23.354 70 Median 0.82924 0.78217 10.61 17 1 Median 0.9004 0.76268 18.042 10 1 Median 0.86738 0.8718 12.666 14 0 Median 0.99763 0.86071 13.485 6 0 Median 1.3572 1.3994 18.34 12 0 Median 0.99226 0.81752 6.3609 11 0 Median 2049200000 1050700000 998490000 1100800000 583360000 517470000 454780000 224150000 230630000 156230000 80483000 75748000 9090700 4491700 4599000 65937000 26607000 39330000 262340000 131640000 130710000 20231 2634;1887;3849;2844;1849;3838 21093;21094 105670;105671;105672;105673;105674;105675;105676;105677;105678;105679;105680;105681;105682;105683;105684;105685;105686;105687;105688;105689;105690;105691;105692;105693;105694;105695;105696;105697;105698;105699;105700;105701;105702;105703;105704;105705;105706;105707;105708;105709;105710;105711;105712;105713;105714;105715;105716;105717;105718;105719;105720;105721;105722;105723;105724;105725;105726;105727;105728;105729;105730;105731;105732;105733;105734;105735;105736;105737;105738;105739;105740 107146;107147;107148;107149;107150;107151;107152;107153;107154;107155;107156;107157;107158;107159;107160;107161;107162;107163;107164;107165;107166;107167;107168;107169;107170;107171;107172;107173;107174;107175;107176;107177;107178;107179;107180;107181;107182;107183;107184;107185;107186;107187;107188;107189;107190;107191;107192;107193;107194;107195;107196;107197;107198;107199;107200;107201;107202;107203;107204;107205;107206;107207;107208;107209;107210;107211;107212;107213;107214;107215;107216;107217;107218;107219;107220;107221;107222 107194 608 77 LHFHNLVK CQTGGVIAEILRGVRLHFHNLVKGLTDLSA EILRGVRLHFHNLVKGLTDLSACKAQLGLG R L H V K G 0 0 1 0 0 0 0 0 2 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 1006.5712 O00567;A0A494C128;Q5JXT2 O00567 127 134 NOP56 Nucleolar protein 56 yes no 2 0.003445 95.793 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 0.94694 0.90376 18.215 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83331 0.87456 NaN 1 1 Median 1.5423 1.3161 NaN 1 0 Median 0.89689 0.892 1.5851 3 0 Median 1.4606 1.2032 0.85904 2 1 Median 41761000 20171000 21590000 0 0 0 0 0 0 5492500 3320300 2172200 1878200 754890 1123300 25787000 12437000 13350000 8602900 3658600 4944400 20232 1472 21095 105741;105742;105743;105744;105745;105746;105747 107223;107224;107225;107226;107227;107228;107229;107230;107231;107232 107227 10 LHFLMTGYTPLTTDQSVASVR NDLIGLIASLIPTPRLHFLMTGYTPLTTDQ GYTPLTTDQSVASVRKTTVLDVMRRLLQPK R L H V R K 1 1 0 1 0 1 0 1 1 0 3 0 1 1 1 2 4 0 1 2 0 0 21 0 2336.1835 P23258;Q9NRH3 P23258 266 286 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 2;3 1.5388E-26 150.45 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.993 0.9421 24.413 6 Median 1.3091 1.2969 37.464 2 1 Median NaN NaN NaN 0 0 Median 0.94901 0.92648 4.9354 2 0 Median 1.0736 0.92513 NaN 1 0 Median 0.90837 0.91079 NaN 1 0 Median NaN NaN NaN 0 0 Median 97105000 47130000 49975000 7205500 3309800 3895700 0 0 0 74897000 36332000 38566000 10257000 4717600 5539300 4744600 2770800 1973800 0 0 0 20233 2108 21096;21097 105748;105749;105750;105751;105752;105753 107233;107234;107235;107236;107237;107238;107239;107240;107241;107242 107235 873 10 LHGELQDR GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ AIPLIEKLHGELQDRKRGRAPQVLVLAPTR K L H D R K 0 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 966.48829 Q9NR30 Q9NR30 248 255 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.055593 33.55 By MS/MS By matching By matching By matching By matching 1 1 1 2 2 1.2039 1.1408 18.151 7 Median NaN NaN NaN 0 0 Median 1.1786 1.0434 NaN 1 0 Median 1.4063 1.4883 NaN 1 0 Median 1.3714 1.1465 NaN 1 0 Median 1.2689 1.3112 19.684 2 0 Median 1.1769 0.98183 0.97966 2 0 Median 3407000 1499500 1907500 0 0 0 1230300 561730 668570 612850 263260 349590 232220 99586 132640 1062900 447180 615720 268730 127780 140950 20234 4076 21098 105754;105755;105756;105757;105758;105759;105760 107243 107243 1 LHGLDEEAEQK THIDVIHYRKTDAKRLHGLDEEAEQKLFSE DAKRLHGLDEEAEQKLFSEKRVELLKELSR R L H Q K L 1 0 0 1 0 1 3 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1267.6044 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 379 389 MCM4 DNA replication licensing factor MCM4 yes no 2;3 6.7018E-16 192.64 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 3 3 1 0.92573 0.90288 20.973 15 Median 0.89505 0.87065 14.971 4 0 Median 1.1352 0.99601 9.5258 4 0 Median 0.8211 0.90367 5.2757 3 0 Median 1.0426 0.8832 45.882 3 0 Median 0.70916 0.72737 NaN 1 0 Median NaN NaN NaN 0 0 Median 65590000 31261000 34329000 14443000 7578900 6864300 41149000 18319000 22830000 7717000 4164500 3552400 1200400 557140 643240 1080600 641650 438900 0 0 0 20235 441 21099 105761;105762;105763;105764;105765;105766;105767;105768;105769;105770;105771;105772;105773;105774;105775 107244;107245;107246;107247;107248;107249;107250;107251;107252;107253;107254;107255 107250 12 LHGLPEQFLYGTATK KEWLTNFMEDRRQRRLHGLPEQFLYGTATK LHGLPEQFLYGTATKHLTYNDFINKELILF R L H T K H 1 0 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 15 0 1673.8777 Q02880;E9PCY5 Q02880 698 712 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 4.0297E-07 94.717 By MS/MS By MS/MS By MS/MS 2 2 3 0.9539 0.99834 22.418 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88825 0.98066 33.134 2 1 Median 1.5517 1.3624 14.85 2 0 Median 0.94951 0.99362 5.4396 3 0 Median NaN NaN NaN 0 0 Median 43656000 22375000 21281000 0 0 0 0 0 0 25214000 12994000 12221000 940810 347930 592880 17501000 9034000 8467200 0 0 0 20236 2704 21100 105776;105777;105778;105779;105780;105781;105782 107256;107257;107258;107259;107260;107261;107262 107256 7 LHGSVGGAQNLSALGALVSLSNAR NRSAPHLPGLMCLLRLHGSVGGAQNLSALG NLSALGALVSLSNARLSSIKTRFEGLCLLS R L H A R L 4 1 2 0 0 1 0 4 1 0 5 0 0 0 0 4 0 0 0 2 0 0 24 0 2291.2346 Q8IZL8;C9JFV4;I3L445;I3L1P4;I3L4M7 Q8IZL8 75 98 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 3 1.9181E-12 59.943 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0531 1.0929 14.893 4 Median NaN NaN NaN 0 0 Median 0.97519 0.83347 NaN 1 0 Median 1.0521 1.1551 NaN 1 0 Median 1.1971 1.0617 NaN 1 0 Median 1.0542 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median 7215400 3538200 3677200 0 0 0 2878700 1323900 1554800 3038900 1597800 1441200 157730 72927 84805 1140000 543580 596460 0 0 0 20237 3351 21101 105783;105784;105785;105786 107263;107264;107265 107265 3 LHGVNINVEASK KTAAEDAIRNLHHYKLHGVNINVEASKNKS HYKLHGVNINVEASKNKSKTSTKLHVGNIS K L H S K N 1 0 2 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1279.6884 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 60 71 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2;3 5.5527E-22 201.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 5 3 6 1.0779 0.95507 15.018 25 Median 1.0271 0.94877 0.13557 2 0 Median 1.1195 0.96867 15.339 4 1 Median 1.0331 0.98937 16.425 5 0 Median 1.1472 0.95507 10.486 5 0 Median 1.1518 1.1556 8.7475 3 0 Median 1.0425 0.8602 16.86 6 1 Median 254880000 121120000 133760000 35439000 17667000 17772000 9268900 4154100 5114800 125800000 60418000 65386000 22830000 10642000 12188000 52372000 24018000 28355000 9163500 4218800 4944700 20238 3870;3780 21102 105787;105788;105789;105790;105791;105792;105793;105794;105795;105796;105797;105798;105799;105800;105801;105802;105803;105804;105805;105806;105807;105808;105809;105810;105811 107266;107267;107268;107269;107270;107271;107272;107273;107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286;107287;107288;107289;107290;107291;107292;107293;107294;107295;107296;107297 107275 32 LHHEFLQQSLR NDNSKLQIPIPHSLRLHHEFLQQSLRNKSL HSLRLHHEFLQQSLRNKSLQMNDYKIALLC R L H L R N 0 1 0 0 0 2 1 0 2 0 3 0 0 1 0 1 0 0 0 0 0 0 11 0 1406.7419 Q5JWT2;Q9ULK4 Q5JWT2 459 469 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 2;3 3.8629E-05 96.015 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.1667 1.1197 11.34 4 Median 1.1679 1.1614 NaN 1 0 Median 1.1575 0.98014 NaN 1 0 Median 1.1654 1.2813 NaN 1 0 Median 1.2705 1.0795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23214000 11147000 12066000 1715300 790850 924430 4223100 2181800 2041300 12979000 6291900 6686900 4296500 1882700 2413800 0 0 0 0 0 0 20239 3059 21103 105812;105813;105814;105815;105816 107298;107299;107300;107301;107302 107301 5 LHHQNQQQIQQQQQQLQR QQLQQQQQQQQHLIKLHHQNQQQIQQQQQQ QNQQQIQQQQQQLQRIAQLQLQQQQQQQQQ K L H Q R I 0 1 1 0 0 11 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 18 0 2310.169 Q96RN5;G3V1P5;H7C308 Q96RN5 223 240 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 3 0.055524 9.2834 By MS/MS 1 1.0668 0.91068 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0668 0.91068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 594430 291700 302740 0 0 0 0 0 0 0 0 0 594430 291700 302740 0 0 0 0 0 0 20240 3727 21104 105817 107303;107304 107303 2 LHIFNAK GFCHVGEEENEARGKLHIFNAKKAAAHYKC EENEARGKLHIFNAKKAAAHYKCMLFSSGT K L H A K K 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 228 234 PHF6 PHD finger protein 6 yes no 2 0.0064112 98.513 By matching By MS/MS By MS/MS 1 3 2 1.1736 1.1981 11.391 5 Median 1.6063 1.5162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1442 1.1997 2.4088 3 1 Plateau 1.3342 1.1981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18913000 8206800 10706000 507200 241080 266120 0 0 0 10662000 4929800 5731900 7744200 3036000 4708300 0 0 0 0 0 0 20241 3327 21105 105818;105819;105820;105821;105822;105823 107305;107306;107307;107308;107309 107308 5 LHIFSGAHGPEK QSSESLRCNVEPVGRLHIFSGAHGPEKDFP VGRLHIFSGAHGPEKDFPLHLGKNVVGRMP R L H E K D 1 0 0 0 0 0 1 2 2 1 1 1 0 1 1 1 0 0 0 0 0 0 12 0 1291.6673 Q14676;A2AB05;A2AB07;A2AB06;A0A087X0R2 Q14676 34 45 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2;3 0.00028211 57.802 By MS/MS By MS/MS 4 6 1.0427 0.97542 9.386 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87059 0.96265 13.059 4 0 Median 1.1343 0.97542 5.2915 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15418000 7860000 7557600 0 0 0 0 0 0 9534700 5121200 4413500 5882900 2738800 3144100 0 0 0 0 0 0 20242 2887 21106 105824;105825;105826;105827;105828;105829;105830;105831;105832;105833 107310;107311;107312;107313;107314;107315;107316;107317;107318;107319;107320 107313 11 LHIFSGAHGPEKDFPLHLGK QSSESLRCNVEPVGRLHIFSGAHGPEKDFP GAHGPEKDFPLHLGKNVVGRMPDCSVALPF R L H G K N 1 0 0 1 0 0 1 3 3 1 3 2 0 2 2 1 0 0 0 0 0 0 20 1 2199.1589 Q14676;A2AB05;A2AB07;A2AB06;A0A087X0R2 Q14676 34 53 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 4 0.00042422 30.956 By MS/MS 1 0.6668 0.77172 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6668 0.77172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10755000 6054000 4700500 0 0 0 0 0 0 10755000 6054000 4700500 0 0 0 0 0 0 0 0 0 20243 2887 21107 105834 107321 107321 1 LHIIEVGTPPTGNQPFPK STLFCFAVRGQAGGKLHIIEVGTPPTGNQP IEVGTPPTGNQPFPKKAVDVFFPPEAQNDF K L H P K K 0 0 1 0 0 1 1 2 1 2 1 1 0 1 4 0 2 0 0 1 0 0 18 0 1944.0469 A0A087WVQ6;Q00610 A0A087WVQ6 232 249 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 1.0728E-64 232.42 By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 3 5 3 1 0.64517 0.59426 12.262 17 Median 0.6496 0.61708 8.9152 6 2 Median 0.74784 0.66153 5.8377 3 1 Plateau 0.47209 0.51826 8.495 5 1 Median 0.70564 0.59426 4.1987 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 623380000 367300000 256080000 440210000 256960000 183250000 63271000 33034000 30237000 116890000 75566000 41320000 3015100 1734900 1280200 0 0 0 0 0 0 20244 44 21108 105835;105836;105837;105838;105839;105840;105841;105842;105843;105844;105845;105846;105847;105848;105849;105850;105851;105852 107322;107323;107324;107325;107326;107327;107328;107329;107330;107331;107332;107333;107334;107335;107336;107337;107338;107339;107340;107341;107342;107343;107344 107324 23 LHILASGADVTSANAK KSLDLDSCTLSEILRLHILASGADVTSANA HILASGADVTSANAKYRYQKRGGFDATDDA R L H A K Y 4 0 1 1 0 0 0 1 1 1 2 1 0 0 0 2 1 0 0 1 0 0 16 0 1566.8366 Q9NRL2;A0A087WWN7 Q9NRL2 555 570 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2;3 2.1378E-10 108.35 By MS/MS By MS/MS 3 2 0.97995 1.0783 36.465 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0306 1.1342 27.045 3 0 Median 0.83297 0.75396 19.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65290000 29345000 35945000 0 0 0 0 0 0 59147000 26417000 32730000 6142700 2927700 3215000 0 0 0 0 0 0 20245 4084 21109 105853;105854;105855;105856;105857 107345;107346;107347;107348 107347 4 LHIQNPSFSQINQLVSTIMSASTTTLR VVLDNTALNRIATDRLHIQNPSFSQINQLV QLVSTIMSASTTTLRYPGYMNNDLIGLIAS R L H L R Y 1 1 2 0 0 3 0 0 1 3 3 0 1 1 1 5 4 0 0 1 0 0 27 0 2986.5546 P23258;Q9NRH3;K7EIS0 P23258 218 244 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 3 1.3225E-27 86.732 By MS/MS 2 0.85822 0.86131 1.475 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85822 0.86131 1.475 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8957800 4572400 4385300 0 0 0 0 0 0 8957800 4572400 4385300 0 0 0 0 0 0 0 0 0 20246 2108 21110 105858;105859 107349;107350;107351 107351 874 3 LHISPSNMTNQNTNEYLEK LPYNDYFEYFGPDFKLHISPSNMTNQNTNE PSNMTNQNTNEYLEKIKQRLFENLRMLPHA K L H E K I 0 0 4 0 0 1 2 0 1 1 2 1 1 0 1 2 2 0 1 0 0 0 19 0 2232.0481 Q13547 Q13547 343 361 HDAC1 Histone deacetylase 1 yes yes 2;3 4.3357E-19 147.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 6 7 5 3 0.9358 0.84072 17.544 27 Median 0.85891 0.80184 6.6588 3 0 Median 1.0854 0.93459 24.087 3 0 Median 0.79462 0.76414 15.406 6 0 Median 1.0247 0.86887 13.98 7 0 Median 0.78039 0.75835 16.833 5 0 Median 0.9717 0.81435 12.344 3 0 Median 366960000 188490000 178470000 31434000 16059000 15375000 5805000 2820600 2984400 204960000 107610000 97356000 49880000 22771000 27109000 71414000 37677000 33737000 3468200 1558700 1909500 20247 2823 21111;21112 105860;105861;105862;105863;105864;105865;105866;105867;105868;105869;105870;105871;105872;105873;105874;105875;105876;105877;105878;105879;105880;105881;105882;105883;105884;105885;105886 107352;107353;107354;107355;107356;107357;107358;107359;107360;107361;107362;107363;107364;107365;107366;107367;107368;107369;107370;107371;107372;107373;107374;107375;107376;107377;107378 107363 1517 27 LHISPSNMTNQNTPEYMEK LPYNDYFEYFGPDFKLHISPSNMTNQNTPE PSNMTNQNTPEYMEKIKQRLFENLRMLPHA K L H E K I 0 0 3 0 0 1 2 0 1 1 1 1 2 0 2 2 2 0 1 0 0 0 19 0 2233.0144 Q92769 Q92769 344 362 HDAC2 Histone deacetylase 2 yes yes 2;3 8.4693E-19 148.44 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 7 10 4 1 0.7489 0.69687 17.186 25 Median 0.73898 0.69039 NaN 1 0 Median 0.7837 0.67543 14.256 2 0 Median 0.69064 0.68029 9.8316 7 0 Median 0.84361 0.72055 23.179 10 1 Median 0.73963 0.72168 5.8816 4 0 Median 0.62393 0.52785 NaN 1 0 Median 297990000 164280000 133700000 20292000 11709000 8583000 4402100 2168100 2234000 161110000 89504000 71603000 61029000 32081000 28948000 50042000 28087000 21955000 1113000 735310 377720 20248 3555 21113;21114;21115 105887;105888;105889;105890;105891;105892;105893;105894;105895;105896;105897;105898;105899;105900;105901;105902;105903;105904;105905;105906;105907;105908;105909;105910;105911 107379;107380;107381;107382;107383;107384;107385;107386;107387;107388;107389;107390;107391;107392;107393;107394;107395;107396;107397;107398;107399;107400;107401;107402;107403;107404;107405 107382 1769;1770 27 LHISQLQHENSILK VKDSPLLLQQISAMRLHISQLQHENSILKG RLHISQLQHENSILKGAQMKASLASLPPLH R L H L K G 0 0 1 0 0 2 1 0 2 2 3 1 0 0 0 2 0 0 0 0 0 0 14 0 1658.9104 E7EX90;Q14203;E7EWF7 E7EX90 1080 1093 DCTN1 Dynactin subunit 1 yes no 2;3;4 1.6637E-23 198.32 By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 2 1.1061 1.0325 9.6999 8 Median 1.0559 1.1082 5.5701 4 0 Linear 1.3518 1.1401 NaN 1 0 Median 0.87445 0.93264 NaN 1 1 Median 1.2824 1.1334 15.242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 139500000 63906000 75590000 95746000 44015000 51732000 19465000 8011800 11453000 18071000 9651100 8420000 6214200 2228900 3985300 0 0 0 0 0 0 20249 906 21116 105912;105913;105914;105915;105916;105917;105918;105919 107406;107407;107408;107409;107410;107411;107412;107413;107414 107408 9 LHITPEK ______________________________ TAAYEQLKLHITPEKFYVEACDDGADDVLT K L H E K F 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 7 0 836.4756 Q9NTJ5;F8WCQ2 Q9NTJ5 11 17 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.016172 69.383 By MS/MS 1 1.0467 0.90436 NaN 1 Median NaN NaN NaN 0 0 Median 1.0467 0.90436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1232700 572380 660300 0 0 0 1232700 572380 660300 0 0 0 0 0 0 0 0 0 0 0 0 20250 4109 21117 105920 107415 107415 1 LHIVALIAQK KPGWKETNFQVMQMKLHIVALIAQKGNFSK VMQMKLHIVALIAQKGNFSKTSAQVVLDGL K L H Q K G 2 0 0 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1104.7019 Q14008 Q14008 662 671 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00022062 128.57 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 3 3 1.2272 1.1394 24.93 10 Median 1.2533 1.2031 NaN 1 0 Median 0.8242 0.72263 NaN 1 0 Median 1.1077 1.209 5.5822 2 0 Median 1.2397 1.117 14.873 3 0 Median NaN NaN NaN 0 0 Median 1.2757 1.0515 34.222 3 0 Median 34157000 15572000 18585000 5383200 2526000 2857200 1378200 760860 617330 16030000 7362500 8667200 8147000 3492600 4654500 0 0 0 3218700 1430000 1788800 20251 2850 21118 105921;105922;105923;105924;105925;105926;105927;105928;105929;105930 107416;107417;107418;107419;107420;107421;107422;107423;107424 107417 9 LHIVQVVCKK DGNELTLADCNLLPKLHIVQVVCKKYRGFT NLLPKLHIVQVVCKKYRGFTIPEAFRGVHR K L H K K Y 0 0 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 0 0 3 0 0 10 1 1222.722 O00299 O00299 184 193 CLIC1 Chloride intracellular channel protein 1 yes yes 3 8.061E-05 85.731 By matching By MS/MS 1 2 1.2128 1.1086 11.797 3 Median 0.9821 0.9563 NaN 1 0 Median 1.2747 1.1569 6.0385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9157200 3964600 5192700 2917800 1287800 1630000 6239400 2676800 3562600 0 0 0 0 0 0 0 0 0 0 0 0 20252 1456 21119 105931;105932;105933 107425;107426 107426 2 LHKEPFGEISSR LWQFLSAHKSEQLLRLHKEPFGEISSRYKA LLRLHKEPFGEISSRYKADLSPENAKLLST R L H S R Y 0 1 0 0 0 0 2 1 1 1 1 1 0 1 1 2 0 0 0 0 0 0 12 1 1398.7256 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 5142 5153 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.00062573 75.088 By MS/MS 1 0.75776 0.7777 NaN 1 Median 0.75776 0.7777 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3358700 1818500 1540200 3358700 1818500 1540200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20253 189 21120 105934 107427 107427 1 LHKNDIAINELMK NARERIVGWYHTGPKLHKNDIAINELMKRY PKLHKNDIAINELMKRYCPNSVLVIIDVKP K L H M K R 1 0 2 1 0 0 1 0 1 2 2 2 1 0 0 0 0 0 0 0 0 0 13 1 1537.8286 P51665;H3BNT7;H3BTM8 P51665 101 113 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2;3 0.00025283 80.834 By MS/MS 2 1.205 1.1186 5.5743 2 Median 1.205 1.1186 5.5743 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33950000 14390000 19560000 33950000 14390000 19560000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20254 2440 21121 105935;105936 107428;107429;107430 107429 3 LHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP VNEVLNRLHLAIPTRRDDKERPPFIPEGVV R L H T R R 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 919.56034 Q9BZE4 Q9BZE4 360 367 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0038087 85.212 By MS/MS By MS/MS 2 3 1.0419 1.0762 34.139 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73041 0.74495 52.019 2 0 Median 1.2931 1.111 18.194 3 0 Median 18788000 8910900 9877100 0 0 0 0 0 0 0 0 0 0 0 0 9301200 4727500 4573700 9486900 4183400 5303500 20255 3898 21122 105937;105938;105939;105940;105941 107431;107432;107433;107434 107431 4 LHLAIPTRR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP NEVLNRLHLAIPTRRDDKERPPFIPEGVVA R L H R R D 1 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1075.6614 Q9BZE4 Q9BZE4 360 368 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.022625 43.124 By MS/MS By matching 1 1 0.37549 0.36802 76.828 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58313 0.63358 NaN 1 0 Median 0.24179 0.21376 NaN 1 0 Median 14426000 7681200 6745000 0 0 0 0 0 0 0 0 0 0 0 0 11830000 6490600 5339600 2596100 1190700 1405400 20256 3898 21123 105942;105943 107435 107435 1 LHLEGQQVR KKKCQRLTAELQDTKLHLEGQQVRNHELEK ELQDTKLHLEGQQVRNHELEKKQRRFDSEL K L H V R N 0 1 0 0 0 2 1 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1078.5883 Q92614;A0A0D9SFK2 Q92614 1444 1452 MYO18A Unconventional myosin-XVIIIa yes no 2 0.027549 37.021 By MS/MS By MS/MS By matching 1 3 1 0.92087 0.96963 20.857 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92087 0.80612 NaN 1 0 Median 0.9704 1.0228 17.473 3 0 Plateau 1.602 1.2562 NaN 1 0 Median 45074000 22147000 22927000 0 0 0 0 0 0 0 0 0 331820 148280 183550 43765000 21784000 21980000 977940 214890 763060 20257 267 21124 105944;105945;105946;105947;105948 107436;107437 107436 2 LHLGFIEIR LHDNDRRLADHFGGKLHLGFIEIREKLEEL DHFGGKLHLGFIEIREKLEELKRVVAEKQE K L H I R E 0 1 0 0 0 0 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1096.6393 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 280 288 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 0.0008305 95.531 By MS/MS By matching By MS/MS By matching 1 2 2 2 1.1679 1.0129 24.283 7 Median 1.2146 1.1935 NaN 1 0 Median 1.1314 0.96906 6.2562 2 0 Median 1.3229 1.3621 45.463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2617 1.0353 9.1112 2 0 Median 67547000 32275000 35273000 949050 443510 505540 24444000 11038000 13406000 37478000 18904000 18575000 0 0 0 0 0 0 4675500 1888700 2786900 20258 206;4407 21125 105949;105950;105951;105952;105953;105954;105955 107438;107439;107440;107441;107442 107439 5 LHLGFIQIR LHDNDRRLADHFGGKLHLGFIQIREKLDQL DHFGGKLHLGFIQIREKLDQLRKTVAEKQE K L H I R E 0 1 0 0 0 1 0 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1095.6553 Q9NQ29;A8MYV2;B8ZZ10 Q9NQ29 214 222 LUC7L Putative RNA-binding protein Luc7-like 1 yes no 2 0.063058 27.525 By matching By matching By matching By matching By MS/MS 2 1 2 1 2 1.3775 1.3187 13.856 8 Median 1.2985 1.2912 7.6157 2 0 Median 1.3599 1.1916 NaN 1 0 Median 1.3029 1.3509 8.3691 2 0 Median 1.4535 1.2762 NaN 1 0 Median 1.6205 1.6741 9.7569 2 0 Median NaN NaN NaN 0 0 Median 8150200 3383900 4766300 2262100 947700 1314400 664180 261780 402400 3111300 1321000 1790200 111340 55988 55356 2001400 797420 1204000 0 0 0 20259 4058 21126 105956;105957;105958;105959;105960;105961;105962;105963 107443;107444 107444 2 LHLGHTFSLSK GKYFVTFPYPYMNGRLHLGHTFSLSKCEFA MNGRLHLGHTFSLSKCEFAVGYQRLKGKCC R L H S K C 0 0 0 0 0 0 0 1 2 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6772 Q9P2J5;A0A087WXY1 Q9P2J5 59 69 LARS Leucine--tRNA ligase, cytoplasmic yes no 2;3 5.7529E-06 98.04 By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 1.1354 1.0915 18.788 8 Median 1.0408 1.009 41.967 2 0 Median 1.1944 1.0306 15.999 3 1 Median 1.0626 1.1138 2.4971 2 0 Median 1.2692 1.0888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76941000 36202000 40738000 23228000 11729000 11499000 44797000 21067000 23730000 5677400 2449400 3228000 3238100 957200 2280900 0 0 0 0 0 0 20260 4224 21127 105964;105965;105966;105967;105968;105969;105970;105971;105972 107445;107446;107447;107448;107449;107450;107451 107451 7 LHLGSTPHNLTDANIHELAR YIPLPEEAARAQMFRLHLGSTPHNLTDANI TPHNLTDANIHELARKTEGYSGADISIIVR R L H A R K 2 1 2 1 0 0 1 1 3 1 4 0 0 0 1 1 2 0 0 0 0 0 20 0 2208.14 Q9UN37;I3L4J1 Q9UN37 305 324 VPS4A Vacuolar protein sorting-associated protein 4A yes no 4 6.6495E-09 76.155 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.959 0.94875 22.91 4 Median 1.078 1.0712 NaN 1 0 Median 0.79802 0.69599 NaN 1 0 Median 0.85311 0.84029 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1418 1.1459 NaN 1 1 Median NaN NaN NaN 0 0 Median 25165000 12344000 12821000 3795300 1764700 2030600 930380 525870 404510 12956000 6708300 6247700 0 0 0 7483400 3344700 4138700 0 0 0 20261 4339 21128 105973;105974;105975;105976 107452;107453;107454 107453 3 LHLGTTQNSLTEADFR YIPLPEPHARAAMFKLHLGTTQNSLTEADF HLGTTQNSLTEADFRELGRKTDGYSGADIS K L H F R E 1 1 1 1 0 1 1 1 1 0 3 0 0 1 0 1 3 0 0 0 0 0 16 0 1801.8959 O75351 O75351 312 327 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 3 3.5654E-05 57.288 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.9198 0.88172 18.389 5 Median 0.918 0.88172 NaN 1 0 Median 0.9198 0.79867 NaN 1 0 Median 0.9023 0.90317 7.5145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4821 1.2809 NaN 1 0 Median 28508000 14957000 13551000 9451100 5088700 4362400 1552000 743210 808760 16929000 8896300 8033100 0 0 0 0 0 0 575460 228580 346880 20262 1661 21129 105977;105978;105979;105980;105981 107455;107456;107457;107458;107459 107455 5 LHLIAQELPFDR QKSNQIKEAADIIQKLHLIAQELPFDRFSE IQKLHLIAQELPFDRFSEVKSKIASKYHDL K L H D R F 1 1 0 1 0 1 1 0 1 1 3 0 0 1 1 0 0 0 0 0 0 0 12 0 1450.7932 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 101 112 EXOC5 Exocyst complex component 5 yes no 3 0.001658 39.266 By MS/MS By matching 1 1 0.86324 0.88621 0.52746 2 Median 0.89836 0.88952 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82949 0.88291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4703100 2172000 2531100 1794700 940250 854490 0 0 0 2908400 1231800 1676600 0 0 0 0 0 0 0 0 0 20263 181 21130 105982;105983 107460 107460 1 LHLIEEK SRDQLRQLFKDNPFKLHLIEEKVTGPTATV LFKDNPFKLHLIEEKVTGPTATVYGCGTLV K L H E K V 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 880.50182 Q9BW92;U3KQG0 Q9BW92 216 222 TARS2 Threonine--tRNA ligase, mitochondrial yes no 2 0.034824 76.035 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20264 3867 21131 105984 107461 107461 1 LHLLSVLK TLAKSQVSSVRKNLKLHLLSVLKHPASLEF SVRKNLKLHLLSVLKHPASLEFQAQITTLL K L H L K H 0 0 0 0 0 0 0 0 1 0 4 1 0 0 0 1 0 0 0 1 0 0 8 0 921.60114 Q92797;A0A087WUE9;M0R3C7 Q92797 303 310 SYMPK Symplekin yes no 2 0.011162 57.463 By matching By MS/MS By MS/MS 1 1 1 1.1528 1.0597 10.104 3 Median NaN NaN NaN 0 0 Median 1.1787 1.0597 NaN 1 0 Median 1.092 1.184 NaN 1 0 Median 1.1528 0.96769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6108700 2899700 3209000 0 0 0 506020 223320 282700 4293700 2077200 2216500 1309000 599210 709760 0 0 0 0 0 0 20265 3558 21132 105985;105986;105987 107462;107463;107464;107465 107462 4 LHLPPVR FRMEKLNQLWEKAQRLHLPPVRLAELHADL QLWEKAQRLHLPPVRLAELHADLKIQERDE R L H V R L 0 1 0 0 0 0 0 0 1 0 2 0 0 0 2 0 0 0 0 1 0 0 7 0 830.51266 P30533;A0A3B3IRQ7 P30533 69 75 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 0.012634 77.906 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.89539 1.0402 26.324 5 Linear 0.63542 0.61556 NaN 1 0 Median 0.92094 0.78488 NaN 1 0 Median 0.9534 1.0359 NaN 1 0 Median 0.73093 0.64 29.292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8068600 4240500 3828200 1104300 696070 408250 1617100 767510 849570 2574900 1344500 1230400 2772300 1432400 1339900 0 0 0 0 0 0 20266 2196 21133 105988;105989;105990;105991;105992 107466;107467;107468;107469;107470 107468 5 LHLQEVQLMTK KVESLLNEMKELDSKLHLQEVQLMTKIEAC LDSKLHLQEVQLMTKIEACIELEKIVGELK K L H T K I 0 0 0 0 0 2 1 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 11 0 1338.733 P49454 P49454 1811 1821 CENPF Centromere protein F yes yes 3 0.05566 29.341 By MS/MS 1 0.78076 0.8373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78076 0.8373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7211200 3643400 3567800 0 0 0 0 0 0 7211200 3643400 3567800 0 0 0 0 0 0 0 0 0 20267 2383 21134 105993 107471 107471 0 LHLQSTDYGNFLANEASPLTVSVIDDR DYLNLVQCETLEDLKLHLQSTDYGNFLANE ANEASPLTVSVIDDRLKEKMVVEFRHMRNH K L H D R L 2 1 2 3 0 1 1 1 1 1 4 0 0 1 1 3 2 0 1 2 0 0 27 0 2974.4672 F5GYQ1;P61421;H3BQJ1;H3BQB4;H3BSG7 F5GYQ1 47 73 ATP6V0D1 V-type proton ATPase subunit d 1 yes no 3 0.053547 8.2867 By MS/MS 2 1.1683 1.0013 3.2233 2 Median NaN NaN NaN 0 0 Median 1.1683 1.0013 3.2233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1776600 730920 1045700 0 0 0 1776600 730920 1045700 0 0 0 0 0 0 0 0 0 0 0 0 20268 1012 21135 105994;105995 107472 107472 1 LHLQTVPSK YSETLLSYFYKCPVRLHLQTVPSKVVYKYL YKCPVRLHLQTVPSKVVYKYL_________ R L H S K V 0 0 0 0 0 1 0 0 1 0 2 1 0 0 1 1 1 0 0 1 0 0 9 0 1021.592 Q96EL2;F8VYR5 Q96EL2 153 161 MRPS24 28S ribosomal protein S24, mitochondrial yes no 2 0.013129 57.177 By MS/MS By MS/MS By matching By matching 1 3 2 1 1.216 1.145 13.497 6 Median 0.98363 0.92829 NaN 1 0 Median 1.3012 1.1096 7.299 2 1 Median 1.1236 1.1523 3.7615 2 0 Median 1.6731 1.3947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7020500 3236900 3783600 1953000 933710 1019300 3067600 1395600 1672000 1737200 801390 935850 262640 106150 156490 0 0 0 0 0 0 20269 3636 21136 105996;105997;105998;105999;106000;106001;106002 107473;107474;107475;107476;107477 107474 5 LHLSGIDANPNALFPPVEFPAPR DHRDNLEFFLAGIGRLHLSGIDANPNALFP NPNALFPPVEFPAPRGTPLISPLIKWDHSL R L H P R G 3 1 2 1 0 0 1 1 1 1 3 0 0 2 5 1 0 0 0 1 0 0 23 0 2471.2961 P49327;A0A0U1RQF0 P49327 803 825 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 3.1994E-35 142.99 By MS/MS By MS/MS By MS/MS By matching 4 5 1 1 0.64396 0.52641 28.666 11 Median 0.42918 0.41107 3.8909 4 2 Median 0.66292 0.54756 3.3446 5 0 Median 0.64396 0.71259 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93932 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median 161490000 101620000 59871000 90552000 60945000 29607000 65883000 37465000 28418000 3816200 2709300 1106800 0 0 0 1241800 502870 738970 0 0 0 20270 2377 21137 106003;106004;106005;106006;106007;106008;106009;106010;106011;106012;106013 107478;107479;107480;107481;107482;107483;107484;107485;107486;107487;107488;107489;107490;107491;107492;107493;107494;107495 107482 18 LHLSQALHK L H H K 1 0 0 0 0 1 0 0 2 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1045.6033 REV__P55060 yes yes 2 0.0068944 53.166 By MS/MS 1 1.3245 1.1573 NaN 1 Median NaN NaN NaN 0 0 Median 1.3245 1.1573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8852700 3859100 4993600 0 0 0 8852700 3859100 4993600 0 0 0 0 0 0 0 0 0 0 0 0 + 20271 4538 21138 106014 107496 107496 1 LHLSSPDNFR FYRLCAGASEDIREKLHLSSPDNFRYLNRG DIREKLHLSSPDNFRYLNRGCTRYFANKET K L H F R Y 0 1 1 1 0 0 0 0 1 0 2 0 0 1 1 2 0 0 0 0 0 0 10 0 1184.5938 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 263 272 MYO6 Unconventional myosin-VI yes no 2 0.024036 50.607 By MS/MS 1 1.0853 1.0494 NaN 1 Median 1.0853 1.0494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5565300 2565400 2999900 5565300 2565400 2999900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20272 164 21139 106015 107497 107497 1 LHLVDLAGSER EQRKKSDKNSSFRSKLHLVDLAGSERQKKT FRSKLHLVDLAGSERQKKTKAEGDRLKEGI K L H E R Q 1 1 0 1 0 0 1 1 1 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1208.6513 O95239;Q2VIQ3 O95239 236 246 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B no no 2;3 0.00020335 81.972 By matching By MS/MS By MS/MS 1 1 4 1.126 0.98365 23.775 6 Median 1.565 1.5866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1584 1.2743 NaN 1 0 Median 1.0588 0.93061 7.2997 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13922000 5959800 7962300 1564900 718940 845930 0 0 0 4920700 1940800 2979800 7436500 3300000 4136500 0 0 0 0 0 0 20273 1757 21140 106016;106017;106018;106019;106020;106021 107498;107499;107500;107501 107500 3 LHLVESLLSR NGPLPIPSEGSGFTKLHLVESLLSRIPSSK SGFTKLHLVESLLSRIPSSKETNKMKERAI K L H S R I 0 1 0 0 0 0 1 0 1 0 4 0 0 0 0 2 0 0 0 1 0 0 10 0 1165.6819 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 838 847 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0002262 128.38 By MS/MS By MS/MS 1 1 1.0951 0.98089 1.3978 2 Median 1.0555 0.99064 NaN 1 0 Median 1.1363 0.97125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20052000 9571500 10480000 14683000 7131100 7551900 5368700 2440400 2928300 0 0 0 0 0 0 0 0 0 0 0 0 20274 3116 21141 106022;106023 107502;107503;107504;107505 107503 4 LHLYNSLTR VQPQWSPPAGTQPCRLHLYNSLTRNKEVFI GTQPCRLHLYNSLTRNKEVFIPQDGKKVTW R L H T R N 0 1 1 0 0 0 0 0 1 0 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1115.6087 P49589;B4DKY1;C9JLN0;E9PRS8;E9PLP0 P49589 29 37 CARS Cysteine--tRNA ligase, cytoplasmic no no 2 0.00073228 101.54 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.0769 0.97822 16.734 4 Median 1.0595 1.0061 NaN 1 0 Median 1.0946 0.9511 NaN 1 0 Median 1.144 1.3077 NaN 1 0 Median 1.0371 0.89373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18158000 8200700 9957700 6793100 3340700 3452400 2122200 918050 1204200 4977300 1936200 3041100 4265900 2005800 2260100 0 0 0 0 0 0 20275 2386;962 21142 106024;106025;106026;106027;106028 107506;107507;107508;107509;107510;107511 107506 6 LHMLQISYFR GWAFCSQDASDGLQRLHMLQISYFRDPYHV DGLQRLHMLQISYFRDPYHVWYQGNASLGG R L H F R D 0 1 0 0 0 1 0 0 1 1 2 0 1 1 0 1 0 0 1 0 0 0 10 0 1306.6856 Q9UNN8 Q9UNN8 28 37 PROCR Endothelial protein C receptor yes yes 3 0.0010958 54.608 By MS/MS By matching By matching 1 1 1 1.8577 1.6655 16.547 3 Median 1.5275 1.5374 NaN 1 0 Median 1.8577 1.6655 NaN 1 0 Median 2.0453 2.1132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2998200 1071600 1926700 2151600 769780 1381800 123350 42746 80607 723290 259050 464230 0 0 0 0 0 0 0 0 0 20276 4346 21143 106029;106030;106031 107512;107513 107512 2 LHMVLRPFLLR FDTNNCLGDQKLVERLHMVLRPFLLRRIKA LVERLHMVLRPFLLRRIKADVEKSLPPKKE R L H L R R 0 2 0 0 0 0 0 0 1 0 4 0 1 1 1 0 0 0 0 1 0 0 11 1 1393.838 O60264 O60264 384 394 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 0.00086968 51.927 By MS/MS By matching By matching By matching 1 1 1 1 0.93125 1.0162 13.169 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91238 1.1096 NaN 1 0 Median 0.95052 0.93055 NaN 1 0 Median 0.82235 0.8935 NaN 1 0 Median 1.295 1.1706 NaN 1 0 Median 9113600 4713500 4400100 0 0 0 0 0 0 5034900 2536500 2498400 49084 23927 25157 3744700 2013200 1731500 284880 139860 145030 20277 1608 21144 106032;106033;106034;106035 107514;107515 107514 2 LHNAIEGGTQLSR KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL VRLHNAIEGGTQLSRALETLTGALFQRPPL R L H S R A 1 1 1 0 0 1 1 2 1 1 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1394.7266 O60832;C9IYT0;H7C0M1;H7BZF2 O60832 159 171 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2;3 1.1658E-07 130.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 7 7 9 10 1.2739 1.1676 22.786 39 Median 1.2711 1.274 12.331 2 0 Median 1.4238 1.2329 19.806 5 0 Median 0.94727 1.0231 25.237 7 0 Median 1.1989 1.0267 25.327 7 0 Median 1.3371 1.4368 22.809 9 3 Median 1.526 1.2555 19.47 9 1 Median 141920000 63938000 77980000 5069000 1933100 3135900 14300000 5420900 8879500 34412000 17387000 17025000 17330000 7414100 9916000 47715000 21950000 25765000 23091000 9833000 13258000 20278 1634 21145 106036;106037;106038;106039;106040;106041;106042;106043;106044;106045;106046;106047;106048;106049;106050;106051;106052;106053;106054;106055;106056;106057;106058;106059;106060;106061;106062;106063;106064;106065;106066;106067;106068;106069;106070;106071;106072;106073;106074;106075 107516;107517;107518;107519;107520;107521;107522;107523;107524;107525;107526;107527;107528;107529;107530;107531;107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546;107547;107548;107549;107550;107551;107552;107553;107554;107555;107556;107557;107558;107559;107560 107519 45 LHNELQSGSLR SRPSGRSDLTVDAVKLHNELQSGSLRLGKS DAVKLHNELQSGSLRLGKSEAPETPMEEEA K L H L R L 0 1 1 0 0 1 1 1 1 0 3 0 0 0 0 2 0 0 0 0 0 0 11 0 1252.6524 Q5JTH9;A0A087X1U8 Q5JTH9 58 68 RRP12 RRP12-like protein yes no 2;3 4.8407E-05 118.18 By MS/MS By MS/MS By MS/MS 2 1 2 1.4305 1.4128 30.69 5 Median NaN NaN NaN 0 0 Median 1.5436 1.3078 10.928 2 0 Median 1.3158 1.4347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8212 1.8775 47.732 2 2 Median NaN NaN NaN 0 0 Median 28660000 10784000 17877000 0 0 0 8290300 3709200 4581100 1855000 1037700 817300 0 0 0 18515000 6036700 12478000 0 0 0 20279 3052 21146 106076;106077;106078;106079;106080 107561;107562;107563;107564;107565 107562 5 LHNLAQFEGGESK LVSLVQKAVTAIMTRLHNLAQFEGGESKVN TRLHNLAQFEGGESKVNTLVAAANSLDNLC R L H S K V 1 0 1 0 0 1 2 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1428.6997 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3811 3823 TRRAP Transformation/transcription domain-associated protein yes no 2;3 2.203E-05 152.04 By MS/MS By MS/MS 2 2 1.132 1.1597 26.777 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95073 1.0147 10.421 2 0 Median 1.5575 1.4741 25.447 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47155000 22649000 24506000 0 0 0 0 0 0 39909000 19292000 20617000 7245400 3356900 3888600 0 0 0 0 0 0 20280 991 21147 106081;106082;106083;106084 107566;107567;107568;107569;107570;107571 107567 6 LHNMIVDLDNVVK EVAGAKPHITAAEGKLHNMIVDLDNVVKKV GKLHNMIVDLDNVVKKVQAAQSEAKVVSQY K L H V K K 0 0 2 2 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 3 0 0 13 0 1508.8021 Q16891;B9A067;C9J406;H7C463 Q16891 331 343 IMMT MICOS complex subunit MIC60 yes no 2;3 7.441E-07 112.13 By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1.226 1.123 15.887 6 Median 1.0149 0.93023 6.1551 2 0 Median 1.5794 1.3813 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2491 1.1033 NaN 1 0 Median 1.2034 1.2343 NaN 1 0 Median 1.3528 1.1431 NaN 1 0 Median 36153000 16111000 20042000 18120000 9015600 9104300 16350000 6272900 10078000 0 0 0 308850 135800 173050 1136100 582550 553600 237330 103950 133380 20281 3001 21148 106085;106086;106087;106088;106089;106090 107572;107573;107574;107575 107574 4 LHNMIVDLDNVVKK EVAGAKPHITAAEGKLHNMIVDLDNVVKKV KLHNMIVDLDNVVKKVQAAQSEAKVVSQYH K L H K K V 0 0 2 2 0 0 0 0 1 1 2 2 1 0 0 0 0 0 0 3 0 0 14 1 1636.8971 Q16891;B9A067;C9J406;H7C463 Q16891 331 344 IMMT MICOS complex subunit MIC60 yes no 3;4 0.0010101 38.189 By MS/MS 2 1.1303 1.1667 15.024 2 Median 1.1303 1.1667 15.024 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7938500 3499800 4438700 7938500 3499800 4438700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20282 3001 21149 106091;106092 107576;107577;107578 107577 3 LHNQQALSSSIEEGLR EYEAHQDRVLIRLSRLHNQQALSSSIEEGL HNQQALSSSIEEGLRMQAMHRAQRVRRPIP R L H L R M 1 1 1 0 0 2 2 1 1 1 3 0 0 0 0 3 0 0 0 0 0 0 16 0 1780.9068 Q06587 Q06587 131 146 RING1 E3 ubiquitin-protein ligase RING1 yes yes 2;3 6.093E-41 171.05 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.8622 0.80806 47.609 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5835 0.58366 NaN 1 1 Median 1.9443 1.6637 NaN 1 1 Median 0.6507 0.65206 NaN 1 0 Median 1.1425 1.0014 NaN 1 0 Median 23680000 11431000 12249000 0 0 0 0 0 0 5984700 4022800 1961900 12929000 4406400 8522200 4423600 2804400 1619200 342960 197240 145720 20283 2727 21150 106093;106094;106095;106096 107579;107580;107581 107579 3 LHNQVNGTEWSWK THLDYVDTERIMTEKLHNQVNGTEWSWKNL EKLHNQVNGTEWSWKNLNTLCWAIGSISGA K L H W K N 0 0 2 0 0 1 1 1 1 0 1 1 0 0 0 1 1 2 0 1 0 0 13 0 1597.7637 O14980 O14980 480 492 XPO1 Exportin-1 yes yes 2;3 1.2439E-05 96.015 By MS/MS By MS/MS By matching 3 1 2 1.2778 1.1209 23.432 6 Median 1.7749 1.817 32.345 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3299 1.1202 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4422 1.209 22.906 2 0 Median 28866000 13281000 15585000 26678000 12382000 14296000 0 0 0 0 0 0 1558800 629410 929370 0 0 0 628620 269300 359330 20284 1510 21151 106097;106098;106099;106100;106101;106102 107582;107583;107584 107582 3 LHNSLIGTK DLANIAEVEVSIPAKLHNSLIGTKGRLIRS VSIPAKLHNSLIGTKGRLIRSIMEECGGVH K L H T K G 0 0 1 0 0 0 0 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 9 0 981.56073 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 664 672 HDLBP Vigilin yes no 2 0.00044685 126.55 By MS/MS By MS/MS 1 2 1.6093 1.3615 42.685 3 Plateau 1.0765 1.0148 NaN 1 0 Median 1.0237 0.89408 59.473 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14349000 5773900 8575000 1934700 734770 1199900 12414000 5039200 7375100 0 0 0 0 0 0 0 0 0 0 0 0 20285 4 21152 106103;106104;106105 107585;107586;107587 107587 3 LHNTIVEINNHK AVAEKAGKVEAEVKRLHNTIVEINNHKLKA VKRLHNTIVEINNHKLKAQQDKLDKINKQL R L H H K L 0 0 3 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1430.763 Q9NTJ3;E9PD53 Q9NTJ3 887 898 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 8.871E-07 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 3 1 1 1.0498 0.99068 11.605 12 Median 1.0653 1.0425 12.638 2 0 Median 1.0992 0.94088 5.5202 3 0 Median 1.0268 1.1136 4.0943 2 2 Median 1.0802 0.97289 14.775 3 0 Plateau 0.96492 1.0217 NaN 1 0 Median 1.205 1.0327 NaN 1 0 Median 39636000 18962000 20674000 7840300 3802200 4038100 11268000 5417100 5851200 8952100 4353800 4598300 8023400 3669300 4354000 1820400 929930 890470 1731400 789690 941700 20286 4108 21153 106106;106107;106108;106109;106110;106111;106112;106113;106114;106115;106116;106117 107588;107589;107590;107591;107592;107593;107594;107595;107596;107597;107598;107599 107592 12 LHPDKNPNNPNAHGDFLK SSREIRQAFKKLALKLHPDKNPNNPNAHGD DKNPNNPNAHGDFLKINRAYEVLKDEDLRK K L H L K I 1 0 4 2 0 0 0 1 2 0 2 2 0 1 3 0 0 0 0 0 0 0 18 1 2026.9973 E7EP04;A0A494C1G5;Q8IXB1;Q71S60;A0A087WXH7 E7EP04 62 79 DNAJC10 DnaJ homolog subfamily C member 10 yes no 4 0.018146 18.76 By matching By MS/MS By MS/MS 1 1 1 0.59744 0.68381 21.957 3 Plateau 0.43276 0.44788 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59744 0.68381 NaN 1 0 Median 0.62714 0.61266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5854200 3495100 2359200 1729900 1130100 599790 0 0 0 2275200 1431100 844100 1849200 933880 915290 0 0 0 0 0 0 20287 468 21154 106118;106119;106120 107600;107601 107601 2 LHPEDFPEEDKK YLYAVRDREMFGYMKLHPEDFPEEDKKTYG YMKLHPEDFPEEDKKTYGEIFEKFHPIR__ K L H K K T 0 0 0 2 0 0 3 0 1 0 1 2 0 1 2 0 0 0 0 0 0 0 12 1 1482.6991 O95298 O95298 95 106 NDUFC2 NADH dehydrogenase [ubiquinone] 1 subunit C2 yes yes 3 0.049401 13.679 By matching By MS/MS 1 1 0.56592 0.55362 10.746 2 Median 0.63785 0.59733 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50211 0.51311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3651800 2490600 1161200 908200 544630 363570 0 0 0 2743600 1945900 797660 0 0 0 0 0 0 0 0 0 20288 1762 21155 106121;106122 107602 107602 1 LHPELSGPGVAAK GRGFSQPKSLARHLRLHPELSGPGVAAKVL LRLHPELSGPGVAAKVLAASVRRAKGPEEA R L H A K V 2 0 0 0 0 0 1 2 1 0 2 1 0 0 2 1 0 0 0 1 0 0 13 0 1274.6983 Q6DD87 Q6DD87 199 211 ZNF787 Zinc finger protein 787 yes yes 2;3 0.00040254 53.034 By MS/MS By MS/MS 2 4 0.93597 0.83081 7.9012 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82628 0.81591 16.313 2 0 Median 0.94467 0.83081 3.6133 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24655000 12731000 11924000 0 0 0 0 0 0 8530400 4197900 4332500 16124000 8533100 7591400 0 0 0 0 0 0 20289 3131 21156 106123;106124;106125;106126;106127;106128 107603;107604;107605;107606;107607;107608;107609;107610 107609 8 LHPEMSNLDLTK PYFRFFMEKRAKYAKLHPEMSNLDLTKILS YAKLHPEMSNLDLTKILSKKYKELPEKKKM K L H T K I 0 0 1 1 0 0 1 0 1 0 3 1 1 0 1 1 1 0 0 0 0 0 12 0 1396.7021 P17480;E9PKP7;E9PMM2 P17480 133 144 UBTF Nucleolar transcription factor 1 yes no 2;3 0.00016972 86.014 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 4 0.87143 0.78747 16.951 10 Median 0.74837 0.7293 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90572 0.98594 NaN 1 0 Median 1.1704 1.0156 NaN 1 0 Median 0.70943 0.74913 13.715 3 0 Median 0.93394 0.76764 17.999 4 0 Median 119160000 68096000 51061000 3054500 1323200 1731300 0 0 0 13672000 6900600 6771600 1849500 880160 969300 74873000 44428000 30445000 25709000 14564000 11145000 20290 2040 21157 106129;106130;106131;106132;106133;106134;106135;106136;106137;106138 107611;107612;107613;107614;107615;107616 107611 6 LHPFHVIR MVKSCGKDGFHIRVRLHPFHVIRINKMLSC GFHIRVRLHPFHVIRINKMLSCAGADRLQT R L H I R I 0 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 1 0 0 8 0 1017.5872 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5;Q96L21;B8A6G2;A6QRI9;H7C2U2 F8W7C6 40 47 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2 0.0029333 103.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0969 1.1089 26.697 5 Median 0.96691 0.92009 NaN 1 0 Median 0.95946 0.81307 NaN 1 0 Median 1.1973 1.1505 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0969 1.1089 NaN 1 0 Median 2.0475 1.6408 NaN 1 0 Median 131240000 62272000 68963000 69540000 34918000 34622000 2714700 1308900 1405800 9235600 4020200 5215400 0 0 0 31393000 14420000 16972000 18353000 7605000 10748000 20291 1084 21158 106139;106140;106141;106142;106143 107617;107618;107619;107620;107621;107622;107623;107624;107625 107618 9 LHPGDLITVVDAVTFSPK EWLHAYDVCMKYFDRLHPGDLITVVDAVTF GDLITVVDAVTFSPKAVTKLSVEARKEMTR R L H P K A 1 0 0 2 0 0 0 1 1 1 2 1 0 1 2 1 2 0 0 3 0 0 18 0 1908.0357 A2RRP1;H0Y5G7 A2RRP1 1887 1904 NBAS Neuroblastoma-amplified sequence yes no 3 4.6808E-08 70.96 By MS/MS 1 0.70316 0.61303 NaN 1 Median NaN NaN NaN 0 0 Median 0.70316 0.61303 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937700 2339900 1597900 0 0 0 3937700 2339900 1597900 0 0 0 0 0 0 0 0 0 0 0 0 20292 500 21159 106144 107626 107626 1 LHPGELADTPK SELELMTYINENWDRLHPGELADTPKSERY NWDRLHPGELADTPKSERYEHVLEALNDYK R L H P K S 1 0 0 1 0 0 1 1 1 0 2 1 0 0 2 0 1 0 0 0 0 0 11 0 1176.6139 Q9Y483 Q9Y483 303 313 MTF2 Metal-response element-binding transcription factor 2 yes yes 2 0.021954 34.387 By matching By MS/MS 1 1 0.72421 0.72916 18.826 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78424 0.83298 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66877 0.63828 NaN 1 0 Median NaN NaN NaN 0 0 Median 5682900 3428600 2254300 0 0 0 0 0 0 2534000 1280000 1254000 0 0 0 3148900 2148600 1000300 0 0 0 20293 4439 21160 106145;106146 107627 107627 1 LHPHELNNLLSK VTRKAAAQQLGEVVKLHPHELNNLLSKVLI VVKLHPHELNNLLSKVLIYLRSANWDTRIA K L H S K V 0 0 2 0 0 0 1 0 2 0 4 1 0 0 1 1 0 0 0 0 0 0 12 0 1413.7728 A0A0A0MTH9;O14981 A0A0A0MTH9 35 46 BTAF1 TATA-binding protein-associated factor 172 yes no 3 0.00028733 57.567 By MS/MS By MS/MS By MS/MS 1 1 1 1.0043 1.0841 22.734 3 Median NaN NaN NaN 0 0 Median 1.0043 0.88528 NaN 1 0 Median 0.98345 1.0841 NaN 1 1 Median 1.5432 1.3937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21446000 11079000 10367000 0 0 0 1779600 900100 879460 16304000 8482400 7822100 3361600 1696000 1665600 0 0 0 0 0 0 20294 191 21161 106147;106148;106149 107628;107629;107630;107631;107632 107632 5 LHPTYTVDMPSYVPK GEDAPKNKDLVEWLKLHPTYTVDMPSYVPK LHPTYTVDMPSYVPKNADVLFSSFQKPKQK K L H P K N 0 0 0 1 0 0 0 0 1 0 1 1 1 0 3 1 2 0 2 2 0 0 15 0 1746.8651 Q9P2D1 Q9P2D1 2597 2611 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.011579 33.842 By MS/MS 1 0.78272 0.83697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78272 0.83697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10851000 4917800 5932800 0 0 0 0 0 0 10851000 4917800 5932800 0 0 0 0 0 0 0 0 0 20295 4220 21162 106150 107633 107633 1 LHPVILASIVDSYER GPALPGPFPGGRVVRLHPVILASIVDSYER LHPVILASIVDSYERRNEGAARVIGTLLGT R L H E R R 1 1 0 1 0 0 1 0 1 2 2 0 0 0 1 2 0 0 1 2 0 0 15 0 1710.9305 O00303;E9PQV8;A0A1W2PP79 O00303 94 108 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2;3 9.375E-05 65.043 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 2 1.024 0.98203 17.905 10 Median 0.8594 0.83028 14.655 2 0 Median 1.0929 0.94096 15.145 2 0 Median 0.98809 0.98586 8.286 2 0 Median 1.1998 1.0372 NaN 1 0 Median 1.1924 1.2042 NaN 1 0 Median 1.2484 1.0752 34.095 2 0 Median 51022000 25437000 25584000 20386000 10547000 9838600 9179200 4554000 4625200 12394000 6264800 6129600 6444300 2945500 3498900 1102900 451290 651580 1515200 674640 840560 20296 1457 21163 106151;106152;106153;106154;106155;106156;106157;106158;106159;106160 107634;107635;107636;107637;107638;107639;107640;107641;107642;107643;107644;107645 107639 12 LHPYTVPR APVQSEVLVMQSEYRLHPYTVPRDVRIMVH VMQSEYRLHPYTVPRDVRIMVHPHVTAVSE R L H P R D 0 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 1 0 1 1 0 0 8 0 981.5396 Q96T58 Q96T58 3186 3193 SPEN Msx2-interacting protein yes yes 2 0.071363 30.185 By MS/MS By matching 1 1 0.77003 0.88525 1.7923 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80898 0.89654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73295 0.8741 NaN 1 0 Median NaN NaN NaN 0 0 Median 2766500 1746100 1020400 0 0 0 0 0 0 2420600 1522600 897930 0 0 0 345970 223460 122510 0 0 0 20297 3741 21164 106161;106162 107646 107646 1 LHQEDNDYINASLIK NRYRDVSPFDHSRIKLHQEDNDYINASLIK LHQEDNDYINASLIKMEEAQRSYILTQGPL K L H I K M 1 0 2 2 0 1 1 0 1 2 2 1 0 0 0 1 0 0 1 0 0 0 15 0 1771.8741 P18031 P18031 59 73 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 3 0.001082 48.177 By MS/MS By MS/MS 1 1 1.1871 1.1347 29.272 2 Median 0.98114 0.92258 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4363 1.3957 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14941000 6551200 8390300 6059700 3054000 3005700 0 0 0 8881800 3497200 5384500 0 0 0 0 0 0 0 0 0 20298 2052 21165 106163;106164 107647;107648 107648 2 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK TIQGQYAIPQPDLTKLHQLAMQQSHFPMTH NTGFSGIESSSPEVKGYWGLDASAQTTSHE K L H V K G 1 0 1 0 0 3 2 3 3 1 2 1 2 2 2 5 2 0 0 1 0 0 31 0 3381.587 F8VRH0;H3BRU6;F8VZX2;Q15366 Q15366 246 276 PCBP2 Poly(rC)-binding protein 2 no no 3;4;5 4.9143E-51 113.47 By MS/MS By MS/MS By matching By MS/MS 2 11 3 1 0.72357 0.72316 16.45 17 Median 0.73053 0.67791 25.497 2 0 Median NaN NaN NaN 0 0 Median 0.70193 0.69605 9.7351 11 2 Median 0.86628 0.736 26.031 3 0 Median 0.99124 0.99308 NaN 1 0 Median NaN NaN NaN 0 0 Median 623020000 345230000 277780000 27270000 15943000 11327000 0 0 0 568160000 315660000 252500000 10401000 5317100 5084100 17186000 8312100 8873900 0 0 0 20299 2942;1077;1062 21166;21167;21168 106165;106166;106167;106168;106169;106170;106171;106172;106173;106174;106175;106176;106177;106178;106179;106180;106181 107649;107650;107651;107652;107653;107654;107655;107656;107657;107658;107659;107660;107661;107662;107663;107664;107665;107666;107667;107668;107669;107670 107670 359;360 22 LHQLDAEKER LKETYPNYLPLYVARLHQLDAEKERMKRLN LYVARLHQLDAEKERMKRLNEIVDAANAVI R L H E R M 1 1 0 1 0 1 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1237.6415 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8;A0A494C1S6;A0A494C0A3 A0A494C0U1 990 999 TPP2 Tripeptidyl-peptidase 2 yes no 3 0.00026407 70.977 By matching By MS/MS 1 1 1.1558 1.1457 2.9413 2 Median 1.0876 1.1221 NaN 1 0 Median 1.2283 1.1698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1630300 613900 1016400 242440 98528 143920 1387800 515370 872440 0 0 0 0 0 0 0 0 0 0 0 0 20300 461 21169 106182;106183 107671;107672 107672 2 LHQLSGSDQLESTAHSR TEMIHNYMEHLERTKLHQLSGSDQLESTAH QLSGSDQLESTAHSRIRKERPISLGIFPLP K L H S R I 1 1 0 1 0 2 1 1 2 0 3 0 0 0 0 4 1 0 0 0 0 0 17 0 1864.9028 A0A087X2D8;O60271 A0A087X2D8 179 195 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3;4 5.4053E-15 160.64 By MS/MS By MS/MS By MS/MS 4 7 1 1.2566 1.1157 10.811 12 Median 1.138 1.1157 6.0705 4 0 Median 1.2912 1.0979 13.499 7 0 Median NaN NaN NaN 0 0 Median 1.3762 1.2151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73464000 31726000 41738000 17139000 7831200 9307500 55391000 23435000 31956000 0 0 0 933960 459370 474590 0 0 0 0 0 0 20301 134 21170 106184;106185;106186;106187;106188;106189;106190;106191;106192;106193;106194;106195 107673;107674;107675;107676;107677;107678;107679;107680;107681;107682;107683;107684;107685;107686;107687;107688;107689;107690 107683 18 LHQMWLSWNQK VKQGVDQKLVEGQEKLHQMWLSWNQKQLQG GQEKLHQMWLSWNQKQLQGPEKEPPKPEQV K L H Q K Q 0 0 1 0 0 2 0 0 1 0 2 1 1 0 0 1 0 2 0 0 0 0 11 0 1469.7238 O60664;K7ERZ3 O60664 297 307 PLIN3 Perilipin-3 yes no 2;3 0.00011372 128.38 By MS/MS By matching 4 1 1.0283 0.9187 39.119 4 Median 1.0985 1.0315 44.75 3 1 Plateau 1.358 1.1617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14039000 7613700 6425300 13874000 7560000 6313600 165370 53649 111720 0 0 0 0 0 0 0 0 0 0 0 0 20302 1624 21171 106196;106197;106198;106199;106200 107691;107692;107693;107694;107695 107693 5 LHSFESHKDEIFQVQWSPHNETILASSGTDR DKTVALWDLRNLKLKLHSFESHKDEIFQVQ SPHNETILASSGTDRRLNVWDLSKIGEEQS K L H D R R 1 1 1 2 0 2 3 1 3 2 2 1 0 2 1 5 2 1 0 1 0 0 31 1 3594.7128 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5 Q09028 310 340 RBBP4 Histone-binding protein RBBP4 yes no 5 1.5553E-40 98.236 By matching By MS/MS By MS/MS 1 1 2 0.76306 0.75304 12.621 4 Median NaN NaN NaN 0 0 Median 0.8972 0.8189 NaN 1 0 Median 0.70662 0.71976 NaN 1 0 Median 0.72902 0.69691 17.348 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101970000 51270000 50699000 0 0 0 813640 291280 522350 76429000 37221000 39208000 24726000 13758000 10969000 0 0 0 0 0 0 20303 2746 21172 106201;106202;106203;106204 107696;107697;107698;107699 107697 4 LHSFLGDDVFLR KIGEDYVKDLSQLTKLHSFLGDDVFLRELA LTKLHSFLGDDVFLRELAKVKQENKLKFSQ K L H L R E 0 1 0 2 0 0 0 1 1 0 3 0 0 2 0 1 0 0 0 1 0 0 12 0 1417.7354 P06737;E9PK47 P06737 522 533 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 0.00024813 84.213 By MS/MS By MS/MS By MS/MS 3 2 1 1.1392 1.1356 9.5765 6 Median 0.99179 0.98732 10.15 3 1 Median 1.3406 1.1591 5.0562 2 0 Median 1.0884 1.167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31904000 14461000 17443000 15471000 7625300 7845600 15078000 6172300 8905500 1354900 663100 691840 0 0 0 0 0 0 0 0 0 20304 1874 21173 106205;106206;106207;106208;106209;106210 107700;107701;107702;107703;107704;107705;107706 107702 7 LHSIILANPQDNENFIATVR GETPTVDTIDSYMNRLHSIILANPQDNENF LANPQDNENFIATVREVVNRLDR_______ R L H V R E 2 1 3 1 0 1 1 0 1 3 2 0 0 1 1 1 1 0 0 1 0 0 20 0 2264.1913 Q9NP66;H0YKL0 Q9NP66 320 339 HMG20A High mobility group protein 20A yes no 3 2.382E-19 115.57 By MS/MS By matching By MS/MS 2 1 2 0.79052 0.8174 13.851 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77088 0.80029 4.1571 2 0 Median 1.2384 1.0792 NaN 1 0 Median 0.78154 0.79434 4.0463 2 0 Median NaN NaN NaN 0 0 Median 30002000 16944000 13058000 0 0 0 0 0 0 12551000 7205800 5345200 1198400 475300 723110 16252000 9262900 6989400 0 0 0 20305 4040 21174 106211;106212;106213;106214;106215 107707;107708;107709;107710;107711;107712;107713 107711 7 LHSLLGDYYQAIK LYKMLGYFSLVGLLRLHSLLGDYYQAIKVL LRLHSLLGDYYQAIKVLENIELNKKSMYSR R L H I K V 1 0 0 1 0 1 0 1 1 1 3 1 0 0 0 1 0 0 2 0 0 0 13 0 1519.8035 B0QY89;Q9Y262;B0QY90 B0QY89 323 335 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 3 6.979E-06 93.345 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 1.2794 1.2018 11.315 6 Median 1.2551 1.2032 9.871 2 0 Median 1.1278 0.97114 NaN 1 0 Median 1.3553 1.3331 NaN 1 0 Median 1.3878 1.2043 NaN 1 0 Median 1.2424 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median 24423000 11290000 13133000 12397000 5409000 6988000 2859800 1478100 1381700 8236500 3938200 4298200 160760 71645 89110 769000 392760 376240 0 0 0 20306 554 21175 106216;106217;106218;106219;106220;106221 107714;107715;107716;107717 107715 4 LHSLQPHACFR NVHLAPGWLMQLEKKLHSLQPHACFRLFLT LEKKLHSLQPHACFRLFLTMEINPKVPVNL K L H F R L 1 1 0 0 1 1 0 0 2 0 2 0 0 1 1 1 0 0 0 0 0 0 11 0 1364.6772 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4113 4123 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 4.3748E-05 90.685 By MS/MS By matching 1 2 0.87087 0.89037 11.526 3 Median NaN NaN NaN 0 0 Median 0.97606 0.78641 NaN 1 0 Median 0.84237 0.93888 7.5037 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19479000 9605700 9873000 0 0 0 13501000 6464100 7037300 5977300 3141600 2835600 0 0 0 0 0 0 0 0 0 20307 2865 21176 106222;106223;106224 107718 107718 1 LHSTPRPLNIIK ANGGYVCNACGLYQKLHSTPRPLNIIKQNN YQKLHSTPRPLNIIKQNNGEQIIRRRTRKR K L H I K Q 0 1 1 0 0 0 0 0 1 2 2 1 0 0 2 1 1 0 0 0 0 0 12 1 1387.83 Q9UHF7;E5RFF3;H0YAV4 Q9UHF7 926 937 TRPS1 Zinc finger transcription factor Trps1 yes no 3 0.068476 13.277 By MS/MS 1 0.73845 0.84167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73845 0.84167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1908000 1098100 809910 0 0 0 0 0 0 1908000 1098100 809910 0 0 0 0 0 0 0 0 0 20308 4278 21177 106225 107719 107719 1 LHTDDELNWLDHGR TLLRDEKKMEKLKQKLHTDDELNWLDHGRT KLHTDDELNWLDHGRTLREQGVEEHETLLL K L H G R T 0 1 1 3 0 0 1 1 2 0 3 0 0 0 0 0 1 1 0 0 0 0 14 0 1719.7965 Q9Y490 Q9Y490 165 178 TLN1 Talin-1 yes yes 3;4 0.00012897 69.352 By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 1.1067 0.94483 16.158 11 Median 1.0028 0.96543 11.402 2 0 Median 1.2264 1.0366 19.901 4 1 Median 0.87738 0.87361 24.175 3 0 Median 1.0795 0.94195 3.9415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44821000 20966000 23855000 15897000 6248500 9648700 12070000 5172600 6897400 13934000 7995500 5938200 2920600 1549800 1370800 0 0 0 0 0 0 20309 4441 21178 106226;106227;106228;106229;106230;106231;106232;106233;106234;106235;106236 107720;107721;107722;107723;107724 107721 5 LHTFESHKDEIFQVHWSPHNETILASSGTDR DKTVALWDLRNLKLKLHTFESHKDEIFQVH SPHNETILASSGTDRRLNVWDLSKIGEEQS K L H D R R 1 1 1 2 0 1 3 1 4 2 2 1 0 2 1 4 3 1 0 1 0 0 31 1 3617.7288 Q16576;E9PC52;Q5JP02 Q16576 309 339 RBBP7 Histone-binding protein RBBP7 yes no 5 8.939E-30 76.859 By matching By MS/MS By matching 1 1 1 0.67379 0.68512 13.649 3 Median NaN NaN NaN 0 0 Median 0.81504 0.74419 NaN 1 0 Median 0.67379 0.68512 NaN 1 0 Median 0.61109 0.57001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42922000 24548000 18374000 0 0 0 885750 460440 425310 35134000 20244000 14890000 6902600 3843700 3058900 0 0 0 0 0 0 20310 2990 21179 106237;106238;106239 107725;107726 107725 2 LHTLEEEKEELAQYQK KREKINELLKYIEERLHTLEEEKEELAQYQ HTLEEEKEELAQYQKWDKMRRALEYTIYNQ R L H Q K W 1 0 0 0 0 2 5 0 1 0 3 2 0 0 0 0 1 0 1 0 0 0 16 1 1986.9898 Q9UQE7 Q9UQE7 200 215 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3;4 4.1793E-10 143.46 By MS/MS By MS/MS By matching 2 2 1 0.82197 0.95665 61.198 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81387 0.95125 0.80122 2 0 Median 1.3476 1.2837 1.4514 2 0 Median NaN NaN NaN 0 0 Median 0.33431 0.29325 NaN 1 0 Median 79412000 39907000 39505000 0 0 0 0 0 0 70416000 35590000 34825000 8252900 3742200 4510700 0 0 0 743860 574770 169080 20311 4362 21180 106240;106241;106242;106243;106244 107727;107728;107729;107730;107731;107732 107728 6 LHTLSVEHQR SRDSVEGDALVNGAKLHTLSVEHQREELKE VNGAKLHTLSVEHQREELKEELVLKTQNQP K L H Q R E 0 1 0 0 0 1 1 0 2 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1218.6469 Q5JRA6;A0A0A0MRH6 Q5JRA6 606 615 MIA3 Melanoma inhibitory activity protein 3 yes no 3 0.0075859 34.755 By matching By MS/MS 1 1 1.0796 0.97845 21.506 2 Median 0.85371 0.84042 NaN 1 0 Median 1.3653 1.1392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1433700 658520 775230 222570 123980 98588 1211200 534530 676640 0 0 0 0 0 0 0 0 0 0 0 0 20312 3049 21181 106245;106246 107733 107733 1 LHTSPLTQIR YDGRGDNQPLHIFDKLHTSPLTQIRLNPVY HIFDKLHTSPLTQIRLNPVYKAVVSSDKSG K L H I R L 0 1 0 0 0 1 0 0 1 1 2 0 0 0 1 1 2 0 0 0 0 0 10 0 1164.6615 Q96BP3;F5H7P7;D6R9Q1 Q96BP3 221 230 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.00037242 114.89 By MS/MS By MS/MS 1 2 1.0669 1.0011 11.41 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0622 1.0852 NaN 1 0 Median 1.0716 0.92349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13338000 6551100 6786500 0 0 0 0 0 0 8488300 4177900 4310400 4849300 2373200 2476100 0 0 0 0 0 0 20313 3609 21182 106247;106248;106249 107734;107735;107736;107737;107738 107734 5 LHVAILER PPGYHPLDVEKEWGKLHVAILEREKQLRSE VEKEWGKLHVAILEREKQLRSEFERLECLQ K L H E R E 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 949.5709 Q15149;H0YDN1;E9PMV1 Q15149 510 517 PLEC Plectin yes no 2 0.0023085 130.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1.4244 1.2309 15.92 8 Median 1.3544 1.3175 NaN 1 0 Median 1.6224 1.3203 21.659 2 0 Median 1.1167 1.1774 NaN 1 0 Median 1.4305 1.2454 NaN 1 0 Median 1.6748 1.7594 NaN 1 1 Median 1.4175 1.1672 5.855 2 0 Median 91179000 37476000 53703000 20651000 8230000 12421000 49483000 19634000 29850000 12162000 6217600 5944400 2043500 834290 1209200 3762000 1354300 2407800 3076900 1205700 1871200 20314 2933 21183 106250;106251;106252;106253;106254;106255;106256;106257 107739;107740;107741;107742;107743;107744;107745;107746;107747 107739 9 LHVDPENFR LKGAFASLSELHCDKLHVDPENFRLLGNVL ELHCDKLHVDPENFRLLGNVLVVVLARRFG K L H F R L 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1125.5567 CON__Q3SX09;A0A2R8Y7R2;E9PFT6 CON__Q3SX09 151 159 HBD no no 2 0.00039415 110.81 By MS/MS By MS/MS 1 1 0.074001 0.058846 57.848 2 Median NaN NaN NaN 0 0 Median 0.1045 0.088586 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.052404 0.039091 NaN 1 1 Median 22077000 21274000 803610 0 0 0 4112900 3792600 320300 0 0 0 0 0 0 0 0 0 17965000 17481000 483310 + 20315 777 21184 106258;106259 107748;107749 107749 2 LHVEAAVAEGAK PEPGPELLAEELQHRLHVEAAVAEGAKNVV QHRLHVEAAVAEGAKNVVKLLSSRRTQDRK R L H A K N 4 0 0 0 0 0 2 1 1 0 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1193.6404 Q6P5Z2 Q6P5Z2 187 198 PKN3 Serine/threonine-protein kinase N3 yes yes 2 0.04347 44.863 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20316 3162 21185 106260 107750 107750 1 LHVEVAK LALKLLDEDEIRGYKLHVEVAKFQLKGEYD EDEIRGYKLHVEVAKFQLKGEYDASKKKKK K L H A K F 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 7 0 794.46504 O43719;Q5H918;Q5H919 O43719 211 217 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.066365 46.835 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 571040 0 571040 0 0 0 571040 0 571040 0 0 0 0 0 0 0 0 0 0 0 0 20317 1586 21186 106261 107751 107751 1 LHVIFGGTK DLSPDRVLDLQADSRLHVIFGGTKVVQHIP LQADSRLHVIFGGTKVVQHIPPQKATTGLK R L H T K V 0 0 0 0 0 0 0 2 1 1 1 1 0 1 0 0 1 0 0 1 0 0 9 0 970.56 Q9HD20 Q9HD20 381 389 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 2 0.002528 71.379 By MS/MS By MS/MS 2 1 1.1272 1.1313 35.655 3 Median NaN NaN NaN 0 0 Median 1.5834 1.3795 47.752 2 0 Median 1.0339 1.1313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8287800 3722700 4565000 0 0 0 6215900 2683000 3532900 2071900 1039800 1032200 0 0 0 0 0 0 0 0 0 20318 4034 21187 106262;106263;106264 107752;107753;107754 107753 3 LHVNMGTTLHR RVLQKLNSILTQPWRLHVNMGTTLHRVTTI QPWRLHVNMGTTLHRVTTISMARCTLTLLK R L H H R V 0 1 1 0 0 0 0 1 2 0 2 0 1 0 0 0 2 0 0 1 0 0 11 0 1277.6663 Q69YN4;H0YBN5 Q69YN4 989 999 KIAA1429 Protein virilizer homolog yes no 3 4.5341E-05 93.258 By MS/MS By MS/MS By MS/MS 1 2 1 1.333 1.1747 15.089 4 Median NaN NaN NaN 0 0 Median 1.4395 1.2158 NaN 1 1 Median 1.2161 1.3185 21.189 2 0 Median 1.2462 1.0944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14199000 7255500 6943300 0 0 0 2432700 1103700 1329100 9437900 5126400 4311600 2328100 1025500 1302600 0 0 0 0 0 0 20319 3130 21188 106265;106266;106267;106268 107755;107756;107757;107758;107759 107756 5 LHVSNIPFR TQPSENTENKSQPKRLHVSNIPFRFRDPDL KSQPKRLHVSNIPFRFRDPDLRQMFGQFGK R L H F R F 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1081.6033 Q9NWB1;A0A087X2B1;A0A0G2JRA5;B0QYV1;F8VZY7;F8VR27;S4R469;J3KNW3;B7Z1U7;I3L1D4;A0A286YEU2;F8VZG9;O43251;B0QYY4;B0QYY7;F8VRS4;A0A0G2JSB3;B0QYY6;J3QRF4;J3QQZ2;A6NFN3;A0A3B3ITL7 Q9NWB1 119 127 RBFOX1;RBFOX2;RBFOX3 RNA binding protein fox-1 homolog 1;RNA binding protein fox-1 homolog;RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 3 yes no 2 0.0027284 69.998 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.75593 0.75562 54.238 4 Median 0.31693 0.29926 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9247 0.96945 NaN 1 0 Median 1.068 0.91961 NaN 1 0 Median 0.61797 0.62087 NaN 1 0 Median NaN NaN NaN 0 0 Median 11934000 6751200 5183200 2469300 1533600 935710 0 0 0 2884400 1442000 1442400 493030 284290 208730 6087600 3491300 2596300 0 0 0 20320 133 21189 106269;106270;106271;106272 107760;107761 107760 2 LHVTALDYLAPYAK LGTCFGKFTKTHKFRLHVTALDYLAPYAKY RLHVTALDYLAPYAKYKVWIKPGAEQSFLY R L H A K Y 3 0 0 1 0 0 0 0 1 0 3 1 0 0 1 0 1 0 2 1 0 0 14 0 1573.8504 Q9Y221;J3QLW7;J3QRD6;J3QRR4 Q9Y221 81 94 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 2;3 1.1328E-05 152.07 By matching By matching By matching By matching By MS/MS By matching 1 2 2 1 4 1 0.93297 0.90312 20.369 11 Median 1.6409 1.5465 NaN 1 0 Median 1.0256 0.89638 13.871 2 0 Median 0.84535 0.80767 2.3048 2 0 Median 1.2779 1.0323 NaN 1 0 Median 0.87452 0.9295 10.748 4 1 Median 0.88759 0.74635 NaN 1 0 Median 57592000 29611000 27982000 732470 291430 441050 462570 229040 233530 3108800 1526500 1582300 157950 73709 84242 52214000 26992000 25222000 916280 497620 418660 20321 4365 21190 106273;106274;106275;106276;106277;106278;106279;106280;106281;106282;106283 107762;107763;107764;107765;107766;107767 107767 6 LHWVEFQNK LLIMEGLSAFLHALRLHWVEFQNKFYSGTG FLHALRLHWVEFQNKFYSGTGFKFLPFSFE R L H N K F 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 1 0 1 0 0 9 0 1199.6087 Q93050;B7Z641;B7Z2A9;F5H1T6;K7ENA1;Q13488;Q9HBG4;Q9Y487;F5H847;F5GX48 Q93050 805 813 ATP6V0A1;TCIRG1;ATP6V0A4;ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a;V-type proton ATPase 116 kDa subunit a isoform 3;V-type proton ATPase 116 kDa subunit a isoform 4;V-type proton ATPase 116 kDa subunit a isoform 2 no no 2;3 0.00074662 92.439 By MS/MS By MS/MS By matching 1 3 1 1.2458 1.2114 11.318 5 Median 1.2208 1.2114 NaN 1 0 Median 1.3195 1.1465 11.274 3 0 Median 1.2458 1.3718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18291000 7739800 10551000 2949500 1260200 1689200 14061000 5811500 8249800 1279900 667990 611890 0 0 0 0 0 0 0 0 0 20322 3576;4440 21191 106284;106285;106286;106287;106288 107768;107769;107770;107771 107771 4 LHYAFQTEGK ERDILVEVNHPFIVKLHYAFQTEGKLYLIL PFIVKLHYAFQTEGKLYLILDFLRGGDLFT K L H G K L 1 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1192.5877 E9PGT3;Q15418;B7Z3B5;F2Z2J1;Q15349;D6RHW7;E9PMM7;D6R910;E9PAN7;D6RA62;D6RE03;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32;A0A2R8Y7S9 B1AXG1 104 113 RPS6KA1;RPS6KA2;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 no no 2;3 0.0045758 67.563 By MS/MS By MS/MS 1 2 1.302 1.1507 NaN 1 Median NaN NaN NaN 0 0 Median 1.302 1.1507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3096600 1036000 2060500 902870 0 902870 2193700 1036000 1157700 0 0 0 0 0 0 0 0 0 0 0 0 20323 581;926 21192 106289;106290;106291 107772;107773;107774 107773 3 LHYCVSCAIHSK ASVFDAYVLPKLYVKLHYCVSCAIHSKVVR YVKLHYCVSCAIHSKVVRNRSREARKDRTP K L H S K V 1 0 0 0 2 0 0 0 2 1 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1473.6857 P62854;Q5JNZ5 P62854 71 82 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2;3 3.0003E-06 105.4 By MS/MS By MS/MS By MS/MS 1 3 1 1.2165 1.0444 3.7781 5 Median 1.1657 1.103 NaN 1 0 Median 1.2501 1.0444 3.4665 3 0 Median 1.0172 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30221000 13826000 16394000 2646200 1228500 1417700 26444000 12026000 14418000 1130800 572020 558830 0 0 0 0 0 0 0 0 0 20324 2601 21193 106292;106293;106294;106295;106296 107775;107776;107777;107778;107779;107780;107781;107782;107783 107780 9 LHYIMGDYAEALSNQQK AMHVETCACLRLLARLHYIMGDYAEALSNQ YIMGDYAEALSNQQKAVLMSERVMGTEHPN R L H Q K A 2 0 1 1 0 2 1 1 1 1 2 1 1 0 0 1 0 0 2 0 0 0 17 0 1979.9411 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 1029 1045 CLUH Clustered mitochondria protein homolog yes no 3 0.00064686 56.872 By MS/MS By matching 1 1 1.2187 1.108 39.072 2 Median 1.521 1.4606 NaN 1 0 Median 0.97657 0.84051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6251300 2804600 3446600 5500200 2419300 3080900 751010 385330 365680 0 0 0 0 0 0 0 0 0 0 0 0 20325 1651 21194 106297;106298 107784 107784 0 LHYKHESWLLHR GRNEEQGIPLEYLEKLHYKHESWLLHRTLK LEKLHYKHESWLLHRTLKTNFDYLQEVPIL K L H H R T 0 1 0 0 0 0 1 0 3 0 3 1 0 0 0 1 0 1 1 0 0 0 12 1 1617.8528 P27707;D6RFG8 P27707 208 219 DCK Deoxycytidine kinase yes no 4 0.00099447 64.878 By MS/MS 1 1.2009 1.1149 NaN 1 Median NaN NaN NaN 0 0 Median 1.2009 1.1149 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5017100 2259700 2757400 0 0 0 5017100 2259700 2757400 0 0 0 0 0 0 0 0 0 0 0 0 20326 826 21195 106299 107785 107785 1 LHYYETPTGIK DMKDGFLAFQTSRYKLHYYETPTGIKVVMN SRYKLHYYETPTGIKVVMNTDLGVGPIRD_ K L H I K V 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 2 0 2 0 0 0 11 0 1320.6714 I3L3S0;Q9Y5R8 I3L3S0 71 81 TRAPPC1 Trafficking protein particle complex subunit 1 yes no 2 0.0013812 59.35 By MS/MS 1 1.23 1.1626 NaN 1 Median 1.23 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5893700 2964300 2929500 5893700 2964300 2929500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20327 1290 21196 106300 107786 107786 1 LIAAATSVLK LASKVEEFGVVSNTRLIAAATSVLKTRFSY VSNTRLIAAATSVLKTRFSYAFPKEFPYRM R L I L K T 3 0 0 0 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 985.61718 E5RFX8;E5RI39;G5E954;H0YBQ5;J3KP90;E5RFK5;P24863 E5RFX8 23 32 CCNC Cyclin-C yes no 2 0.0013065 66.692 By MS/MS By MS/MS 1 1 0.94121 0.82988 3.8668 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90925 0.85288 NaN 1 0 Median 0.9743 0.8075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14445000 7242700 7202100 0 0 0 0 0 0 9696400 4936300 4760100 4748500 2306400 2442100 0 0 0 0 0 0 20328 835 21197 106301;106302 107787;107788;107789 107788 3 LIAAQTGTR RVKCNTDDTIGDLKKLIAAQTGTRWNKIVL IGDLKKLIAAQTGTRWNKIVLKKWYTIFKD K L I T R W 2 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 9 0 929.52943 Q9BZL1 Q9BZL1 30 38 UBL5 Ubiquitin-like protein 5 yes yes 2 0.0022552 73.26 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 2 3 1 1.0807 1.0147 14.948 9 Median 1.0545 1.0281 NaN 1 0 Median 1.0807 0.87408 NaN 1 0 Median 1.0606 1.0603 NaN 1 0 Median 1.1357 0.85636 9.5771 2 0 Median 1.0442 1.0682 18.063 3 0 Median 1.3023 1.0147 NaN 1 0 Median 24752000 11794000 12957000 4108500 2095400 2013200 2813700 1317800 1495900 6690200 3181900 3508300 4079800 1890200 2189600 5596100 2630200 2966000 1463500 678930 784530 20329 3901 21198 106303;106304;106305;106306;106307;106308;106309;106310;106311;106312 107790;107791;107792;107793;107794;107795;107796 107795 7 LIADLGSTSITNLGFR TYDDGATKLNDEARRLIADLGSTSITNLGF IADLGSTSITNLGFRDNWVFCGGKGIKTKS R L I F R D 1 1 1 1 0 0 0 2 0 2 3 0 0 1 0 2 2 0 0 0 0 0 16 0 1676.9097 Q92520 Q92520 164 179 FAM3C Protein FAM3C yes yes 2 1.9848E-06 87.363 By MS/MS 1 1.2091 1.1482 NaN 1 Median 1.2091 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17946000 8162600 9783300 17946000 8162600 9783300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20330 3530 21199 106313 107797;107798 107797 2 LIADVAPSAIR ______________________________ GLAKLIADVAPSAIRENDIKSYFGRKVAID K L I I R E 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1124.6554 P39748;F5H1Y3 P39748 9 19 FEN1 Flap endonuclease 1 yes no 2 0.00011205 142.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 8 4 5 0.96185 0.8329 26.621 25 Median 0.8092 0.78303 8.1376 4 1 Median 1.003 0.86048 8.6354 4 0 Median 0.86516 0.84317 6.892 5 0 Median 0.9628 0.77916 20.225 8 0 Median 2.2791 2.3224 NaN 1 0 Median 1.3287 1.1239 15.551 3 0 Plateau 1672800000 850590000 822210000 112140000 59124000 53021000 22179000 10718000 11461000 794680000 417400000 377280000 714910000 349950000 364960000 2079100 528650 1550400 26807000 12871000 13936000 20331 2283 21200 106314;106315;106316;106317;106318;106319;106320;106321;106322;106323;106324;106325;106326;106327;106328;106329;106330;106331;106332;106333;106334;106335;106336;106337;106338;106339;106340;106341;106342;106343 107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810;107811;107812;107813;107814;107815;107816;107817;107818;107819;107820;107821;107822;107823;107824;107825;107826;107827;107828;107829;107830;107831;107832;107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844;107845;107846 107809 48 LIADVAPSAIRENDIK ______________________________ IADVAPSAIRENDIKSYFGRKVAIDASMSI K L I I K S 3 1 1 2 0 0 1 0 0 3 1 1 0 0 1 1 0 0 0 1 0 0 16 1 1723.9468 P39748;F5H1Y3 P39748 9 24 FEN1 Flap endonuclease 1 yes no 2;3 0.00015188 66.498 By MS/MS By MS/MS By matching By matching 2 4 1 1 0.87535 0.85201 24.306 8 Median 0.77637 0.83173 1.5462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97955 0.86666 11.183 4 0 Median 1.0835 1.1689 NaN 1 0 Median 0.54349 0.49866 NaN 1 0 Median 119880000 58382000 61502000 9746800 5135100 4611600 0 0 0 0 0 0 107300000 51801000 55499000 2025400 952670 1072700 812180 493330 318850 20332 2283 21201 106344;106345;106346;106347;106348;106349;106350;106351 107847;107848;107849;107850;107851;107852 107850 6 LIADVGLVGFPNAGK LPLKGQKRIIHLDLKLIADVGLVGFPNAGK LIADVGLVGFPNAGKSSLLSCVSHAKPAIA K L I G K S 2 0 1 1 0 0 0 3 0 1 2 1 0 1 1 0 0 0 0 2 0 0 15 0 1469.8242 C9J8R7;C9JNI1;A4D1E9 C9J8R7 138 152 GTPBP10 GTP-binding protein 10 yes no 2 0.0039538 36.525 By MS/MS By matching By MS/MS 1 1 1 0.90317 0.68349 25.159 3 Plateau 0.71146 0.68349 NaN 1 0 Median 0.73267 0.63001 NaN 1 0 Median 0.90317 1.0088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5212800 2745100 2467700 1668200 932690 735540 1686100 813050 873030 1858500 999380 859090 0 0 0 0 0 0 0 0 0 20333 502 21202 106352;106353;106354 107853;107854;107855 107854 3 LIAEEGVDSLNVK FQLTMRLRSIKADDKLIAEEGVDSLNVKEL DKLIAEEGVDSLNVKELQAACRARGMRALG K L I V K E 1 0 1 1 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1385.7402 O95202 O95202 361 373 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 8.6406E-07 101.38 By MS/MS By matching By matching 1 2 1 1.1487 1.0651 12.904 4 Median 1.0618 0.9627 NaN 1 0 Median 1.3642 1.1852 13.999 2 0 Median 1.0166 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26732000 11359000 15373000 11932000 5230200 6701700 8396600 3267500 5129100 6403400 2861300 3542100 0 0 0 0 0 0 0 0 0 20334 1754 21203 106355;106356;106357;106358 107856 107856 1 LIAEGNKEELR LRWDKNSLTLEAVKRLIAEGNKEELRKCFG AVKRLIAEGNKEELRKCFGARMEFGTAGLR R L I L R K 1 1 1 0 0 0 3 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1270.6881 Q96G03;E7ENQ8;E9PD70 Q96G03 38 48 PGM2 Phosphoglucomutase-2 yes no 3 0.0025434 41.401 By MS/MS 1 1.0842 1.0985 NaN 1 Median 1.0842 1.0985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2165100 757130 1408000 2165100 757130 1408000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20335 3652 21204 106359 107857 107857 1 LIAEGNKEELRK LRWDKNSLTLEAVKRLIAEGNKEELRKCFG VKRLIAEGNKEELRKCFGARMEFGTAGLRA R L I R K C 1 1 1 0 0 0 3 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 12 2 1398.7831 Q96G03;E7ENQ8;E9PD70 Q96G03 38 49 PGM2 Phosphoglucomutase-2 yes no 2;3 4.8145E-05 88.187 By MS/MS By MS/MS 1 2 1.1333 1.15 11.295 2 Median 0.98078 1.0617 NaN 1 0 Median 1.3094 1.2456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14599000 6611700 7987600 5717400 2698800 3018500 8881900 3912900 4969100 0 0 0 0 0 0 0 0 0 0 0 0 20336 3652 21205 106360;106361;106362 107858;107859;107860;107861;107862 107860 5 LIAEGPGETVLVAEEEAAR TALPLYFVGLYCDKKLIAEGPGETVLVAEE GPGETVLVAEEEAARVALRKLYGFTENRRP K L I A R V 4 1 0 0 0 0 5 2 0 1 2 0 0 0 1 0 1 0 0 2 0 0 19 0 1953.0055 Q9H9J2 Q9H9J2 280 298 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 2 1.1309E-07 69.602 By MS/MS By matching 1 1 1.0784 0.97988 29.445 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81273 0.7957 NaN 1 0 Median 1.4309 1.2067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2478900 1384200 1094700 0 0 0 0 0 0 2288400 1307800 980580 190570 76411 114160 0 0 0 0 0 0 20337 4000 21206 106363;106364 107863 107863 1 LIAEQPPHLTPGIR ERLALIQPSREQVQRLIAEQPPHLTPGIRE RLIAEQPPHLTPGIRELVSRLQERNVQVFL R L I I R E 1 1 0 0 0 1 1 1 1 2 2 0 0 0 3 0 1 0 0 0 0 0 14 0 1540.8726 C9JBI3;P78330 C9JBI3 79 92 PSPH Phosphoserine phosphatase yes no 2;3 0.00011588 70.622 By MS/MS By MS/MS By MS/MS 2 1 1 0.53962 0.51176 21.331 4 Median 0.53962 0.51176 20.255 2 0 Median 0.76924 0.65051 NaN 1 0 Median 0.43937 0.42068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86419000 52913000 33506000 74403000 45305000 29099000 7621100 4077900 3543200 4394600 3530900 863710 0 0 0 0 0 0 0 0 0 20338 688 21207 106365;106366;106367;106368 107864;107865;107866;107867;107868 107864 3 LIAEQTLQENLIEK KSPLHIKDDVLPKQKLIAEQTLQENLIEKG KLIAEQTLQENLIEKGSNLHEKTLGETSAN K L I E K G 1 0 1 0 0 2 3 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 14 0 1640.8985 Q5UIP0 Q5UIP0 1468 1481 RIF1 Telomere-associated protein RIF1 yes yes 2 6.5451E-08 129.89 By matching By MS/MS By matching 2 3 3 0.97643 1.0128 29.636 8 Median NaN NaN NaN 0 0 Median 0.78435 0.69456 22.768 2 0 Median 0.98324 1.0829 12.442 3 0 Median 1.0878 0.98979 30.802 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38798000 18508000 20290000 0 0 0 529660 279270 250390 36901000 17584000 19317000 1367300 645070 722220 0 0 0 0 0 0 20339 3109 21208 106369;106370;106371;106372;106373;106374;106375;106376 107869;107870;107871;107872 107872 4 LIAGNKPVSFLTAQQLQQLQQQGQATQVR LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ QLQQLQQQGQATQVRIQTVPASHLQQGTAS K L I V R I 3 1 1 0 0 9 0 2 0 1 4 1 0 1 1 1 2 0 0 2 0 0 29 1 3192.7367 Q6P4R8 Q6P4R8 1232 1260 NFRKB Nuclear factor related to kappa-B-binding protein yes yes 3 1.3678E-36 89.039 By MS/MS By matching 1 1 0.76754 0.8027 7.3176 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67278 0.76222 NaN 1 0 Median 0.87564 0.84533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7342400 4021900 3320500 0 0 0 0 0 0 7104400 3893800 3210600 238010 128030 109980 0 0 0 0 0 0 20340 3159 21209 106377;106378 107873;107874 107874 2 LIAGYLDR L I D R 1 1 0 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 REV__Q8TC59 yes yes 2 0.0079829 64.776 By MS/MS By MS/MS 3 3 1.2084 1.1133 11.641 6 Median NaN NaN NaN 0 0 Median 1.2173 1.0303 7.3059 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2802 1.3037 8.629 3 0 Plateau NaN NaN NaN 0 0 Median 220900000 98321000 122580000 0 0 0 85775000 38622000 47152000 0 0 0 0 0 0 135130000 59698000 75428000 0 0 0 + 20341 4553 21210 106379;106380;106381;106382;106383;106384 107875;107876;107877;107878;107879;107880;107881 107876 7 LIAHAGSLLNLAK APNVTVMVGELVGARLIAHAGSLLNLAKHA ARLIAHAGSLLNLAKHAASTVQILGAEKAL R L I A K H 3 0 1 0 0 0 0 1 1 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1319.7925 Q9Y2X3 Q9Y2X3 298 310 NOP58 Nucleolar protein 58 yes yes 2;3 9.4655E-16 190.88 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 4 4 8 5 1.283 1.1304 23.365 25 Median 1.799 1.7232 60.386 2 1 Median 1.558 1.3437 17.888 2 0 Median 1.2364 1.2068 10.893 4 0 Median 1.5822 1.3367 25.066 4 0 Median 1.04 1.0307 5.1981 8 0 Median 1.3069 1.0731 16.684 5 0 Median 439580000 201990000 237590000 9567700 2754500 6813300 4181600 1690600 2491000 161230000 73913000 87314000 5429100 2037800 3391300 226850000 108410000 118440000 32326000 13188000 19138000 20342 4396 21211 106385;106386;106387;106388;106389;106390;106391;106392;106393;106394;106395;106396;106397;106398;106399;106400;106401;106402;106403;106404;106405;106406;106407;106408;106409 107882;107883;107884;107885;107886;107887;107888;107889;107890;107891;107892;107893;107894;107895;107896;107897;107898;107899;107900;107901;107902 107893 21 LIAHAGSLTNLAK APSLSALIGEAVGARLIAHAGSLTNLAKYP ARLIAHAGSLTNLAKYPASTVQILGAEKAL R L I A K Y 3 0 1 0 0 0 0 1 1 1 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1307.7561 O00567;A0A494C128;H0YDU4;H0Y653 O00567 308 320 NOP56 Nucleolar protein 56 yes no 2;3 1.0666E-15 190.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 4 10 12 1.1435 1.033 16.264 33 Median 1.1144 1.0659 4.4368 2 0 Median 1.3328 1.1138 11.048 2 0 Median 1.3077 1.0989 16.171 4 0 Linear 1.3807 1.1715 24.025 4 2 Median 0.97097 0.97844 10.214 10 1 Median 1.336 1.0874 20.156 11 1 Median 651420000 308540000 342880000 10253000 4734500 5518000 35152000 15068000 20084000 165960000 76850000 89110000 28181000 12902000 15280000 327530000 163020000 164510000 84342000 35968000 48374000 20343 1472 21212 106410;106411;106412;106413;106414;106415;106416;106417;106418;106419;106420;106421;106422;106423;106424;106425;106426;106427;106428;106429;106430;106431;106432;106433;106434;106435;106436;106437;106438;106439;106440;106441;106442;106443 107903;107904;107905;107906;107907;107908;107909;107910;107911;107912;107913;107914;107915;107916;107917;107918;107919;107920;107921;107922;107923;107924;107925;107926;107927;107928;107929;107930;107931;107932;107933;107934;107935;107936;107937;107938;107939;107940;107941;107942;107943;107944;107945;107946;107947 107911 45 LIAINANDPEASK LGILALIDEGETDWKLIAINANDPEASKFH WKLIAINANDPEASKFHDIDDVKKFKPGYL K L I S K F 3 0 2 1 0 0 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1354.7092 Q9H2U2;D6R967;H0Y9D8 Q9H2U2 204 216 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 2 8.3013E-07 104.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.85122 0.80284 23.935 6 Median 0.64934 0.58826 NaN 1 0 Median 1.371 1.1483 NaN 1 0 Median 0.85122 0.81668 8.8926 2 2 Median 0.86888 0.73226 19.492 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102240000 55093000 47147000 54234000 33834000 20400000 33590000 13229000 20361000 11588000 6281600 5306700 2827400 1748100 1079300 0 0 0 0 0 0 20344 3947 21213 106444;106445;106446;106447;106448;106449 107948;107949;107950;107951;107952;107953;107954 107949 7 LIALLEVLSQK KRIANLQTDLSDGLRLIALLEVLSQKKMHR DGLRLIALLEVLSQKKMHRKHNQRPTFRQM R L I Q K K 1 0 0 0 0 1 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 11 0 1225.7646 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 77 87 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.0018837 56.563 By MS/MS By MS/MS By matching By matching By matching By matching 7 5 4 3 1 3 1.133 1.0888 12.795 23 Median 1.183 1.1395 4.9123 7 0 Median 1.0323 0.93387 4.3306 5 0 Median 1.0663 1.1724 14.768 4 0 Median 1.0446 0.94489 2.5785 3 0 Median 1.2973 1.3399 NaN 1 0 Median 1.2829 1.0511 8.9168 3 0 Median 194950000 90866000 104080000 23335000 10461000 12874000 166820000 78317000 88499000 1426800 663440 763360 497780 245530 252260 340740 149890 190850 2529100 1029000 1500100 20345 2088;3120;1664;2871 21214 106450;106451;106452;106453;106454;106455;106456;106457;106458;106459;106460;106461;106462;106463;106464;106465;106466;106467;106468;106469;106470;106471;106472 107955;107956;107957 107955 3 LIALLEVLSQKK KRIANLQTDLSDGLRLIALLEVLSQKKMHR GLRLIALLEVLSQKKMHRKHNQRPTFRQMQ R L I K K M 1 0 0 0 0 1 1 0 0 1 4 2 0 0 0 1 0 0 0 1 0 0 12 1 1353.8595 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 77 88 FLNA Filamin-A no no 2;3 3.6015E-05 96.89 By MS/MS By MS/MS By MS/MS 5 6 3 1.2312 1.1797 21.827 14 Median 1.2323 1.2875 19.938 5 0 Median 1.1299 1.0474 14.619 6 0 Median 1.2784 1.4656 25.12 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49757000 22393000 27365000 28612000 12187000 16425000 18673000 9137200 9535700 2472500 1068300 1404200 0 0 0 0 0 0 0 0 0 20346 2088;3120 21215 106473;106474;106475;106476;106477;106478;106479;106480;106481;106482;106483;106484;106485;106486 107958;107959;107960;107961;107962;107963;107964;107965;107966;107967 107966 10 LIALLEVLSQKR KRIGNLQTDLSDGLRLIALLEVLSQKRMYR GLRLIALLEVLSQKRMYRKYHQRPTFRQMQ R L I K R M 1 1 0 0 0 1 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 12 1 1381.8657 Q14315;O75369 O75369 50 61 FLNC;FLNB Filamin-C;Filamin-B no no 2;3 5.2172E-06 114.5 By MS/MS By MS/MS By matching 4 5 2 1.1314 1.1662 25.224 11 Median 1.3251 1.3605 9.4719 4 0 Median 1.1287 1.0971 27.989 5 0 Median 0.94004 1.1129 6.6228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30086000 13053000 17033000 9779000 4222200 5556800 19551000 8511600 11039000 756360 319470 436890 0 0 0 0 0 0 0 0 0 20347 1664;2871 21216 106487;106488;106489;106490;106491;106492;106493;106494;106495;106496;106497 107968;107969;107970;107971;107972;107973;107974 107969 7 LIALQMPLLTEGIR QEHPEDQEKVELLKRLIALQMPLLTEGIRI RLIALQMPLLTEGIRIHGEKLTEQLKPLHE R L I I R I 1 1 0 0 0 1 1 1 0 2 4 0 1 0 1 0 1 0 0 0 0 0 14 0 1566.9167 Q9H7D0 Q9H7D0 1592 1605 DOCK5 Dedicator of cytokinesis protein 5 yes yes 2 0.024431 26.673 By MS/MS 1 0.72741 0.81195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72741 0.81195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 535590 305380 230210 0 0 0 0 0 0 535590 305380 230210 0 0 0 0 0 0 0 0 0 20348 3981 21217 106498 107975 107975 1 LIALSIDSVEDHLAWSK RAAKLAPEFAKRNVKLIALSIDSVEDHLAW ALSIDSVEDHLAWSKDINAYNCEEPTEKLP K L I S K D 2 0 0 2 0 0 1 0 1 2 3 1 0 0 0 3 0 1 0 1 0 0 17 0 1895.9993 P30041 P30041 68 84 PRDX6 Peroxiredoxin-6 yes yes 2;3 4.418E-07 89.959 By MS/MS 2 1.2684 1.0582 2.6325 2 Median NaN NaN NaN 0 0 Median 1.2684 1.0582 2.6325 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43384000 18470000 24915000 0 0 0 43384000 18470000 24915000 0 0 0 0 0 0 0 0 0 0 0 0 20349 2179 21218 106499;106500 107976;107977;107978 107978 3 LIANMPESGPSYEFHLTR TQGLGTALKILFSEKLIANMPESGPSYEFH NMPESGPSYEFHLTRQEIVSLFNAFGRIST K L I T R Q 1 1 1 0 0 0 2 1 1 1 2 0 1 1 2 2 1 0 1 0 0 0 18 0 2060.999 Q96HE7 Q96HE7 420 437 ERO1L ERO1-like protein alpha yes yes 3 3.8451E-07 69.737 By MS/MS By MS/MS 2 1 0.98315 0.9371 8.5551 3 Median 0.98861 0.94275 0.85026 2 2 Median NaN NaN NaN 0 0 Median 0.77566 0.81321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27582000 14561000 13021000 24701000 12832000 11870000 0 0 0 2880800 1729200 1151600 0 0 0 0 0 0 0 0 0 20350 3666 21219 106501;106502;106503 107979;107980;107981 107980 3 LIANNTTVER NRELSQKTPPSMRLKLIANNTTVERRFSSW SMRLKLIANNTTVERRFSSWIGGSILASLG K L I E R R 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1129.6091 O96019 O96019 380 389 ACTL6A Actin-like protein 6A yes yes 2 5.0596E-11 179.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 3 3 1.1694 1.0755 11.902 13 Median 1.2352 1.201 1.4978 2 0 Median 1.2703 1.0983 NaN 1 0 Median 0.92031 0.94442 2.5935 2 0 Median 1.3032 1.1371 12.618 2 0 Median 1.0711 1.0879 8.5563 3 0 Median 1.1694 0.91007 12.111 3 0 Median 116220000 54301000 61915000 15289000 6993700 8295400 3336000 1513100 1822900 47118000 23839000 23278000 37340000 16152000 21188000 8393600 3823200 4570400 4738700 1979200 2759500 20351 1809 21220 106504;106505;106506;106507;106508;106509;106510;106511;106512;106513;106514;106515;106516 107982;107983;107984;107985;107986;107987;107988;107989;107990;107991;107992;107993;107994;107995 107991 14 LIANNTTVERR NRELSQKTPPSMRLKLIANNTTVERRFSSW MRLKLIANNTTVERRFSSWIGGSILASLGT K L I R R F 1 2 2 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 11 1 1285.7102 O96019 O96019 380 390 ACTL6A Actin-like protein 6A yes yes 3 0.00076218 50.292 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.1041 1.0943 25.449 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90894 0.9871 NaN 1 0 Median 1.3411 1.2509 NaN 1 0 Median 0.67436 0.71979 NaN 1 0 Median 1.3721 1.2131 NaN 1 0 Median 4004500 1650500 2354000 0 0 0 0 0 0 118330 56064 62267 2486200 966870 1519300 372980 217690 155290 1027000 409850 617190 20352 1809 21221 106517;106518;106519;106520 107996;107997 107996 2 LIAPVAEEEATVPNNK ______________________________ IAPVAEEEATVPNNKITVVGVGQVGMACAI K L I N K I 3 0 2 0 0 0 3 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 16 0 1693.8887 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 8 23 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2;3 1.106E-10 111.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 10 7 3 3 1 0.81763 0.7302 20.183 24 Median 0.77371 0.71576 19.032 10 1 Median 0.8729 0.72609 12.272 7 0 Median 0.85334 0.82172 33.757 3 0 Median 0.92105 0.76851 13.525 3 0 Plateau 0.56334 0.59717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1358900000 722450000 636440000 719290000 386860000 332430000 380290000 195990000 184300000 223480000 120770000 102710000 33913000 17834000 16079000 1913300 999660 913680 0 0 0 20353 1880 21222 106521;106522;106523;106524;106525;106526;106527;106528;106529;106530;106531;106532;106533;106534;106535;106536;106537;106538;106539;106540;106541;106542;106543;106544 107998;107999;108000;108001;108002;108003;108004;108005;108006;108007;108008;108009;108010;108011;108012;108013;108014;108015;108016;108017;108018;108019;108020;108021;108022;108023;108024;108025;108026;108027;108028;108029;108030;108031;108032;108033;108034 108018 37 LIAQACVSIFPDSGHFNVDNIR SIMSKQYGNEVFLAKLIAQACVSIFPDSGH SIFPDSGHFNVDNIRVCKILGSGISSSSVL K L I I R V 2 1 2 2 1 1 0 1 1 3 1 0 0 2 1 2 0 0 0 2 0 0 22 0 2472.222 P50990;H7C4C8 P50990 182 203 CCT8 T-complex protein 1 subunit theta yes no 3 4.2167E-05 36.805 By MS/MS 1 1.0967 0.94161 NaN 1 Median NaN NaN NaN 0 0 Median 1.0967 0.94161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2529700 1308900 1220800 0 0 0 2529700 1308900 1220800 0 0 0 0 0 0 0 0 0 0 0 0 20354 2423 21223 106545 108035;108036 108036 2 LIAQDYK SMSEKCREALTTRQKLIAQDYKVSYSLAKS EALTTRQKLIAQDYKVSYSLAKSCKSDLKK K L I Y K V 1 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 7 0 849.45962 Q92896;H3BM42 Q92896 361 367 GLG1 Golgi apparatus protein 1 yes no 2 0.02008 60.76 By matching By MS/MS 1 2 0.54461 1.2732 28.428 3 Plateau 0.50966 1.0649 NaN 1 0 Median 0.8937 0.96383 39.37 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3722800 1533000 2189900 324690 184200 140490 3398200 1348800 2049400 0 0 0 0 0 0 0 0 0 0 0 0 20355 3563 21224 106546;106547;106548 108037 108037 1 LIASSLVAGEK TAYGEFLSRLRENPRLIASSLVAGEKLNQE ENPRLIASSLVAGEKLNQENTQSVIYTVFT R L I E K L 2 0 0 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1086.6285 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8 Q14C86 109 119 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.00016143 81.338 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.1216 1.0102 17.323 7 Median 0.98843 0.95016 37.69 2 0 Median 1.1873 1.0821 12.01 2 0 Median 0.9427 1.0508 NaN 1 0 Median 1.041 0.94058 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1728 1.0102 NaN 1 0 Median 36960000 16679000 20282000 22634000 9904200 12730000 10841000 5155000 5685800 2493500 1153400 1340000 489230 236770 252460 0 0 0 502470 229070 273390 20356 2907 21225 106549;106550;106551;106552;106553;106554;106555 108038;108039 108039 1 LIASVAGSVER TGFMRGHGTYMGEEKLIASVAGSVERVNKL GEEKLIASVAGSVERVNKLICVKALKTRYI K L I E R V 2 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1100.619 Q13868;A3KFL5;A3KFL2;A3KFL1 Q13868 52 62 EXOSC2 Exosome complex component RRP4 yes no 2 6.4632E-05 152.28 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1.1987 1.0868 20.445 7 Median 1.1304 1.0565 NaN 1 0 Median 1.2371 1.0288 NaN 1 0 Median 1.1316 1.0954 NaN 1 0 Median 1.3025 1.0868 NaN 1 0 Median 1.4057 1.4699 23.819 2 0 Median 1.1112 0.92255 NaN 1 0 Median 161900000 74735000 87165000 36555000 17183000 19371000 14170000 6290200 7879800 79961000 37644000 42317000 21386000 9482500 11903000 7543100 3020600 4522500 2285600 1114200 1171400 20357 2843 21226 106556;106557;106558;106559;106560;106561;106562 108040;108041;108042;108043;108044;108045;108046;108047;108048;108049;108050;108051;108052;108053 108040 14 LIASYCNVGDIEGASK MEEANIQPNRVTYQRLIASYCNVGDIEGAS IASYCNVGDIEGASKILGFMKTKDLPVTEA R L I S K I 2 0 1 1 1 0 1 2 0 2 1 1 0 0 0 2 0 0 1 1 0 0 16 0 1695.8138 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 203 218 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.00076393 42.556 By MS/MS By matching By matching By matching 1 1 1 1 1.3473 1.1397 13.255 4 Median 1.2846 1.2595 NaN 1 0 Median 1.4258 1.2312 NaN 1 0 Median 0.93663 0.95198 NaN 1 0 Median 1.413 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10128000 4171300 5956600 4206100 1709000 2497100 3608100 1387600 2220600 1641200 790130 851040 672510 284610 387900 0 0 0 0 0 0 20358 2315 21227 106563;106564;106565;106566 108054 108054 1 LIAVADSVLTK TDEKILANVTEDAKRLIAVADSVLTKVVGD DAKRLIAVADSVLTKVVGDLLSGTILVGQL R L I T K V 2 0 0 1 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 11 0 1128.6754 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1130 1140 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.027277 50.292 By MS/MS 1 1.1889 1.0373 NaN 1 Median NaN NaN NaN 0 0 Median 1.1889 1.0373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5054000 2496500 2557500 0 0 0 5054000 2496500 2557500 0 0 0 0 0 0 0 0 0 0 0 0 20359 189 21228 106567 108055 108055 1 LIAVEIYR KLFESREKAVRDEAKLIAVEIYRWIRDALR AVRDEAKLIAVEIYRWIRDALRPPLQNINS K L I Y R W 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 1 0 0 8 0 975.57532 Q14008 Q14008 186 193 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0028236 104.45 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 2 3 1.144 1.0144 13.938 11 Median 1.0537 1.0271 1.7602 2 0 Median 1.0972 0.92221 NaN 1 0 Median 1.172 1.2664 13.912 3 0 Median 1.1208 0.97069 12.908 2 0 Median NaN NaN NaN 0 0 Median 1.1581 0.99177 2.2747 3 0 Median 49449000 22652000 26797000 9084500 4429300 4655200 1832100 879810 952260 31831000 14284000 17547000 4413600 1996500 2417100 0 0 0 2288200 1062600 1225700 20360 2850 21229 106568;106569;106570;106571;106572;106573;106574;106575;106576;106577;106578 108056;108057;108058;108059;108060;108061;108062;108063;108064 108057 9 LICQHIVPGNVK FLTQLDRASHPIVQKLICQHIVPGNVKSLL VQKLICQHIVPGNVKSLLKQPIPEPKGGRL K L I V K S 0 0 1 0 1 1 0 1 1 2 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1376.7598 Q9NU22;Q5T795 Q9NU22 1009 1020 MDN1 Midasin yes no 3 0.00098159 45.661 By MS/MS 1 0.52537 0.56593 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52537 0.56593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4561700 2904300 1657300 0 0 0 0 0 0 4561700 2904300 1657300 0 0 0 0 0 0 0 0 0 20361 4112 21230 106579 108065 108065 1 LIDALIENFLQPSK PDQSDTALLEEELKKLIDALIENFLQPSKN KLIDALIENFLQPSKNGLIWRSV_______ K L I S K N 1 0 1 1 0 1 1 0 0 2 3 1 0 1 1 1 0 0 0 0 0 0 14 0 1599.8872 Q6PCE3 Q6PCE3 601 614 PGM2L1 Glucose 1,6-bisphosphate synthase yes yes 2 0.020008 27.329 By MS/MS By MS/MS By matching 1 1 1 0.95863 0.84607 13.005 3 Median 0.8194 0.79145 NaN 1 0 Median 0.95863 0.84607 NaN 1 0 Median 1.0214 1.0173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3002900 1450800 1552000 2088400 1029900 1058500 718620 346370 372260 195820 74539 121280 0 0 0 0 0 0 0 0 0 20362 3167 21231 106580;106581;106582 108066;108067 108066 2 LIDDEVR GDMVLEKPYSEATARLIDDEVRILINDAYK PYSEATARLIDDEVRILINDAYKRTVALLT R L I V R I 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 858.4447 Q9Y4W6 Q9Y4W6 696 702 AFG3L2 AFG3-like protein 2 yes yes 2 0.021555 58.981 By MS/MS By MS/MS By MS/MS 1 1 2 1.0691 1.0782 15.242 4 Median 0.83748 0.81319 NaN 1 0 Median 1.2024 1.0445 NaN 1 0 Median 1.0691 1.1208 0.97396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10787000 5269500 5517800 3356200 1683700 1672400 2187000 951800 1235200 5244200 2634000 2610200 0 0 0 0 0 0 0 0 0 20363 4449 21232 106583;106584;106585;106586 108068;108069;108070;108071 108069 4 LIDDMVAQAMK YKSQFEAQKIWYEHRLIDDMVAQAMKSEGG YEHRLIDDMVAQAMKSEGGFIWACKNYDGD R L I M K S 2 0 0 2 0 1 0 0 0 1 1 1 2 0 0 0 0 0 0 1 0 0 11 0 1233.6097 O75874 O75874 250 260 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 2 0.00037796 70.919 By MS/MS By matching 2 2 1.208 1.0783 19.496 4 Median 0.9917 0.92562 2.4147 2 0 Median 1.4854 1.2892 6.0831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15335000 7294200 8041200 13390000 6512400 6877700 1945300 781800 1163500 0 0 0 0 0 0 0 0 0 0 0 0 20364 1701 21233 106587;106588;106589;106590 108072;108073 108072 2 LIDDMVAQVLK YKTDFDKNKIWYEHRLIDDMVAQVLKSSGG YEHRLIDDMVAQVLKSSGGFVWACKNYDGD R L I L K S 1 0 0 2 0 1 0 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 11 0 1243.6846 P48735;H0YL11 P48735 289 299 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 2 0.0073128 42.599 By matching By matching By MS/MS By matching By matching By matching 1 2 2 1 1 2 1.4749 1.3042 29.476 9 Median 0.90678 0.84692 NaN 1 0 Median 1.8685 1.5875 0.76338 2 0 Median 1.1566 1.1097 22.841 2 0 Median 1.8224 1.6332 NaN 1 0 Median 0.76981 0.83855 NaN 1 0 Median 1.752 1.4897 23.827 2 0 Median 55975000 21515000 34460000 8387600 4272600 4115000 35432000 11976000 23456000 5723600 2613900 3109700 5374800 2094900 3280000 533430 319190 214250 523320 239050 284260 20365 2367 21234 106591;106592;106593;106594;106595;106596;106597;106598;106599 108074 108074 1 LIDDYGVEEEPAELPEGTSLTVDNKR LPAQGLIEFRDALAKLIDDYGVEEEPAELP AELPEGTSLTVDNKRFFFDVGSNKYGVFMR K L I K R F 1 1 1 3 0 0 5 2 0 1 3 1 0 0 2 1 2 0 1 2 0 0 26 1 2888.3927 Q00577 Q00577 205 230 PURA Transcriptional activator protein Pur-alpha yes yes 3 1.101E-26 86.006 By matching By MS/MS By matching By matching 1 1 1 1 0.76749 0.77893 17.243 4 Median NaN NaN NaN 0 0 Median 0.63847 0.59673 NaN 1 0 Median 0.70466 0.8026 NaN 1 0 Median 0.85337 0.75596 NaN 1 0 Median 0.83592 0.89808 NaN 1 0 Median NaN NaN NaN 0 0 Median 15535000 8245800 7289400 0 0 0 166640 87867 78769 14132000 7530300 6601800 237600 128040 109560 998950 499640 499300 0 0 0 20366 2676 21235 106600;106601;106602;106603 108075 108075 1 LIDFLECGK DLERGVEICIATPGRLIDFLECGKTNLRRT IATPGRLIDFLECGKTNLRRTTYLVLDEAD R L I G K T 0 0 0 1 1 0 1 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1093.5478 J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 228 236 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0022569 73.248 By MS/MS By MS/MS By MS/MS 1 1 2 1.4771 1.5181 18.065 4 Median 1.7993 1.734 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6924 1.746 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2887 1.2787 5.4629 2 0 Median NaN NaN NaN 0 0 Median 25370000 10058000 15312000 2582600 930680 1651900 0 0 0 7471700 2820200 4651500 0 0 0 15316000 6307100 9008400 0 0 0 20367 1334 21236 106604;106605;106606;106607 108076;108077;108078;108079;108080 108077 5 LIDFLESGK DLERGVEICIATPGRLIDFLESGKTNLRRC IATPGRLIDFLESGKTNLRRCTYLVLDEAD R L I G K T 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1020.5492 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 305 313 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.00093589 89.698 By MS/MS By MS/MS By matching By MS/MS By matching 4 7 2 4 2 1.0225 1.0182 21.138 15 Median 0.74673 0.7617 60.861 2 0 Median NaN NaN NaN 0 0 Median 1.0214 1.0097 14.777 5 0 Median 1.285 1.0984 5.4104 2 0 Median 0.97438 0.98369 3.3472 4 0 Median 1.2509 1.0367 1.5897 2 0 Median 501960000 251230000 250730000 4322000 2068200 2253800 0 0 0 433120000 218110000 215010000 6735100 2753400 3981600 55032000 27092000 27940000 2748100 1200900 1547200 20368 343 21237 106608;106609;106610;106611;106612;106613;106614;106615;106616;106617;106618;106619;106620;106621;106622;106623;106624;106625;106626 108081;108082;108083;108084;108085;108086;108087;108088;108089;108090;108091;108092;108093;108094;108095;108096;108097 108096 17 LIDGIVLTK FNRALADHSMAQTPRLIDGIVLTKFDTIDD MAQTPRLIDGIVLTKFDTIDDKVGAAISMT R L I T K F 0 0 0 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 1 0 0 9 0 970.60628 P08240 P08240 581 589 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.0035603 64.265 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.1887 1.0556 15.58 5 Median 1.2208 1.1737 NaN 1 0 Median 1.1453 0.9892 NaN 1 0 Median 1.1887 1.2506 NaN 1 0 Median 1.2279 1.0556 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97414 0.83857 NaN 1 0 Median 11847000 5008700 6838200 3405100 1501800 1903300 2113300 894070 1219300 5281700 2222900 3058800 929880 328160 601720 0 0 0 116900 61736 55160 20369 1900 21238 106627;106628;106629;106630;106631 108098;108099;108100 108099 3 LIDHLENTK ALAKKPHIIIATPGRLIDHLENTKGFNLRA IATPGRLIDHLENTKGFNLRALKYLVMDEA R L I T K G 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1081.5768 Q9H0S4;F5H1N9 Q9H0S4 153 161 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.060465 28.218 By MS/MS By matching By matching 1 1 1 1.3898 1.3561 29.541 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1317 1.1278 NaN 1 0 Median 1.0192 0.90919 NaN 1 0 Median 1.7067 1.6306 NaN 1 0 Median NaN NaN NaN 0 0 Median 6048800 2643600 3405100 0 0 0 0 0 0 2453200 1221300 1231900 804960 404020 400950 2790600 1018300 1772300 0 0 0 20370 3928 21239 106632;106633;106634 108101 108101 1 LIDIFYPGDQQSVTFGTK VEGLFDSPPGSDDAKLIDIFYPGDQQSVTF IFYPGDQQSVTFGTKSRVGMGGMEAKVKAA K L I T K S 0 0 0 2 0 2 0 2 0 2 1 1 0 2 1 1 2 0 1 1 0 0 18 0 2028.0204 P54886 P54886 283 300 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 1.4811E-07 86.467 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 4 1 1 1.0708 1.1235 11.204 9 Median 0.99121 0.96602 12.94 2 0 Median 1.3094 1.1606 NaN 1 0 Median 1.1303 1.1832 8.406 4 0 Median NaN NaN NaN 0 0 Median 1.0123 1.1547 NaN 1 0 Median 1.2156 1.0442 NaN 1 0 Median 26509000 12385000 14123000 6365700 3207500 3158200 1788600 667150 1121400 17149000 7993700 9155400 0 0 0 1038800 443350 595440 166470 73612 92860 20371 2488 21240 106635;106636;106637;106638;106639;106640;106641;106642;106643 108102;108103;108104;108105;108106;108107;108108;108109;108110;108111;108112;108113;108114;108115;108116;108117;108118;108119 108112 18 LIDIQEK QQQRELKQLQEERKKLIDIQEKIQALQTAC QLQEERKKLIDIQEKIQALQTACPDLQLSA K L I E K I 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 857.48583 A0A4W8VX11;Q15154 A0A4W8VX11 757 763 PCM1 Pericentriolar material 1 protein yes no 2 0.012003 79.116 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1.352 1.3759 12.369 8 Median 1.244 1.2425 13.174 2 0 Median 1.8259 1.6211 NaN 1 1 Median 1.1903 1.3091 8.2858 2 0 Median 1.5187 1.4051 14.135 2 0 Median 1.4315 1.5155 NaN 1 0 Median NaN NaN NaN 0 0 Median 25163000 10730000 14433000 6958400 2948200 4010200 3529400 1217500 2311800 10597000 4781900 5815000 1931500 752470 1179100 2147000 1030200 1116700 0 0 0 20372 479 21241 106644;106645;106646;106647;106648;106649;106650;106651 108120;108121;108122;108123;108124;108125;108126;108127 108122 8 LIDLCQPTQK MESIKRLYPGSVYGRLIDLCQPTQKKYQIA SVYGRLIDLCQPTQKKYQIAVTKVLGKNMD R L I Q K K 0 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1214.6329 Q14683;G8JLG1 Q14683 519 528 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0025713 59.8 By MS/MS 1 0.83958 0.7195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83958 0.7195 NaN 1 0 Median 1774600 1018900 755780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1774600 1018900 755780 20373 2889 21242 106652 108128;108129 108128 2 LIDLHSPSEIVK GSKTWDRFQMRIHKRLIDLHSPSEIVKQIT HKRLIDLHSPSEIVKQITSISIEPGVEVEV R L I V K Q 0 0 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 12 0 1349.7555 P60866;G3XAN0 P60866 88 99 RPS20 40S ribosomal protein S20 yes no 2;3 1.0059E-09 177.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 2 2 4 4 1.0166 0.89933 17.514 21 Median 0.94926 0.88595 28.457 5 0 Median 1.0218 0.84414 3.7217 4 0 Median 1.1038 1.0368 0.1785 2 0 Median 1.1158 0.90653 1.1281 2 0 Median 0.87085 0.94015 12.885 4 0 Median 1.2537 1.0153 22.926 4 0 Median 1774600000 874260000 900330000 579880000 293000000 286880000 854820000 418550000 436270000 258030000 119620000 138410000 3534100 1534800 1999300 51997000 28259000 23737000 26323000 13289000 13034000 20374 2530 21243 106653;106654;106655;106656;106657;106658;106659;106660;106661;106662;106663;106664;106665;106666;106667;106668;106669;106670;106671;106672;106673 108130;108131;108132;108133;108134;108135;108136;108137;108138;108139;108140;108141;108142;108143;108144;108145;108146;108147;108148;108149;108150;108151;108152;108153;108154;108155;108156;108157;108158;108159;108160;108161;108162;108163;108164;108165;108166;108167;108168;108169;108170 108161 41 LIDLHTNVATAVLEHIK TSAVSSLPELLEKKRLIDLHTNVATAVLEH DLHTNVATAVLEHIKARKLDVYFEYEEKIM R L I I K A 2 0 1 1 0 0 1 0 2 2 3 1 0 0 0 0 2 0 0 2 0 0 17 0 1886.0625 Q8WVM8 Q8WVM8 398 414 SCFD1 Sec1 family domain-containing protein 1 yes yes 3 0.051931 10.374 By MS/MS By matching 1 1 0.603 0.51408 50.317 2 Median NaN NaN NaN 0 0 Median 0.86144 0.73376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42209 0.36018 NaN 1 0 Median 4760500 2541900 2218600 0 0 0 4413200 2351200 2062000 0 0 0 0 0 0 0 0 0 347300 190690 156610 20375 3503 21244 106674;106675 108171 108171 1 LIDNISSR TFERKLPVSSLTISRLIDNISSREEIDHAE SSLTISRLIDNISSREEIDHAEYYLYKFRH R L I S R E 0 1 1 1 0 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 8 0 916.49779 G5EA06;Q92552;D6RH20;D6RJC7;E5RJ73 G5EA06 19 26 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.031031 38.792 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.4725 1.2725 18.441 6 Median 1.0154 1.0267 NaN 1 0 Median 1.5109 1.3122 NaN 1 0 Median 1.0777 1.1508 NaN 1 0 Median 1.5345 1.3377 NaN 1 0 Median 1.7612 1.7735 NaN 1 0 Median 1.4352 1.2341 NaN 1 0 Median 12551000 5187900 7363300 1778700 871490 907220 4728500 1863500 2864900 1399400 809090 590290 618100 240020 378080 2283500 735690 1547800 1743100 668110 1075000 20376 1131 21245 106676;106677;106678;106679;106680;106681 108172 108172 1 LIDREIISHDTR PAITLESPDIKYPLRLIDREIISHDTRRFR PLRLIDREIISHDTRRFRFALPSPQHILGL R L I T R R 0 2 0 2 0 0 1 0 1 3 1 0 0 0 0 1 1 0 0 0 0 0 12 1 1466.7841 P00387;B1AHF3 P00387 47 58 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 3 1.2162E-05 95.981 By MS/MS By MS/MS By matching 2 1 1 1.5916 1.4649 16.739 3 Median 1.1965 1.2881 NaN 1 0 Median 1.5916 1.4649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9238 1.7953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20289000 7652000 12637000 5919400 2419500 3499800 13132000 4798000 8334100 0 0 0 1237600 434450 803140 0 0 0 0 0 0 20377 1816 21246 106682;106683;106684;106685 108173;108174;108175;108176 108176 4 LIDREIISHDTRR PAITLESPDIKYPLRLIDREIISHDTRRFR LRLIDREIISHDTRRFRFALPSPQHILGLP R L I R R F 0 3 0 2 0 0 1 0 1 3 1 0 0 0 0 1 1 0 0 0 0 0 13 2 1622.8853 P00387;B1AHF3 P00387 47 59 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 3;4 9.8524E-07 97.86 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1.2174 1.2525 18.58 8 Median 1.0873 1.0514 9.6517 3 0 Median 1.5862 1.3809 7.3808 3 1 Median 0.93775 1.0799 NaN 1 0 Median 1.6003 1.558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29146000 11910000 17236000 13550000 6163500 7386700 13111000 4690300 8420400 714860 326770 388090 1770200 729550 1040600 0 0 0 0 0 0 20378 1816 21247 106686;106687;106688;106689;106690;106691;106692;106693 108177;108178;108179;108180;108181;108182;108183;108184 108180 8 LIDSGVGLAPHHAVEK TLSDPQQVTLDVMKKLIDSGVGLAPHHAVE IDSGVGLAPHHAVEKAMAELQELLTVSERW K L I E K A 2 0 0 1 0 0 1 2 2 1 2 1 0 0 1 1 0 0 0 2 0 0 16 0 1641.8839 P29375;E7EV89 P29375 925 940 KDM5A Lysine-specific demethylase 5A yes no 4 0.0096478 23.799 By MS/MS By MS/MS 1 1 0.86081 0.86696 5.8374 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81136 0.9035 NaN 1 0 Median 0.91327 0.83191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6550300 3703100 2847200 0 0 0 0 0 0 5477300 3108300 2369000 1073000 594740 478220 0 0 0 0 0 0 20379 2172 21248 106694;106695 108185;108186;108187 108186 3 LIDSWMGK LKQAEELNEKLTPLKLIDSWMGKGAAKLRV EKLTPLKLIDSWMGKGAAKLRVAGVVAPTL K L I G K G 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 8 0 948.47389 P46063 P46063 515 522 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.0067369 69.998 By MS/MS By MS/MS By MS/MS 1 2 2 1.0799 1.0803 10.146 5 Median 1.2239 1.1715 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96336 1.0071 9.9246 2 0 Median 1.2103 1.0538 12.673 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46158000 22995000 23163000 5043000 2576900 2466100 0 0 0 34964000 17666000 17298000 6151700 2752900 3398800 0 0 0 0 0 0 20380 2337 21249 106696;106697;106698;106699;106700 108188;108189;108190;108191 108189 4 LIDTVKDPVSK VKILENLRGGTNIIKLIDTVKDPVSKTPAL NIIKLIDTVKDPVSKTPALVFEYINNTDFK K L I S K T 0 0 0 2 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 2 0 0 11 1 1213.6918 P19784;H3BSA1;H3BNI9 P19784 98 108 CSNK2A2 Casein kinase II subunit alpha yes no 2;3 0.0023332 42.629 By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 0.95345 0.99712 11.702 7 Median 1.0282 0.963 NaN 1 0 Median 1.107 1.005 NaN 1 0 Median 0.91502 0.99712 5.7811 3 0 Median 0.96769 0.86168 22.095 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14205000 6953900 7251500 2317500 1286700 1030800 1237100 545260 691810 6774600 3316700 3457900 3876300 1805300 2071000 0 0 0 0 0 0 20381 2069 21250 106701;106702;106703;106704;106705;106706;106707 108192;108193;108194;108195 108192 4 LIDVLENR RLRMGCEIVIATPGRLIDVLENRYLVLSRC VIATPGRLIDVLENRYLVLSRCTYVVLDEA R L I N R Y 0 1 1 1 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 970.54475 Q9BUQ8 Q9BUQ8 529 536 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS 2 2 1 0.92827 0.96115 27.893 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68963 0.72853 42.264 2 0 Median 1.2065 1.0326 10.141 2 0 Median 0.84731 0.89215 NaN 1 0 Median NaN NaN NaN 0 0 Median 41046000 20916000 20130000 0 0 0 0 0 0 28496000 14730000 13766000 8458700 3740100 4718600 4090800 2445800 1645000 0 0 0 20382 3842 21251 106708;106709;106710;106711;106712 108196;108197;108198;108199;108200;108201;108202;108203;108204 108196 9 LIDVNHYAK ANQSRIDALEKAGQKLIDVNHYAKDEVAAR EKAGQKLIDVNHYAKDEVAARMNEVISLWK K L I A K D 1 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1071.5713 A0A0D9SF54;Q13813 Q13813 638 646 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00069031 104.37 By MS/MS By MS/MS By MS/MS 1 2 1 1.1647 1.0698 7.9975 3 Median NaN NaN NaN 0 0 Median 1.2039 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.111 1.0356 10.996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18298000 8092200 10205000 0 0 0 13610000 5820100 7789500 0 0 0 4688000 2272100 2416000 0 0 0 0 0 0 20383 264;2838 21252 106713;106714;106715;106716 108205;108206;108207;108208;108209;108210 108205 6 LIDVNHYAKDEVAAR ANQSRIDALEKAGQKLIDVNHYAKDEVAAR LIDVNHYAKDEVAARMNEVISLWKKLLEAT K L I A R M 3 1 1 2 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 2 0 0 15 1 1712.8846 A0A0D9SF54;Q13813 Q13813 638 652 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3;4 4.0871E-25 126.76 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 2 6 2 4 3 0.99926 1.0953 32.146 21 Median 1.2677 1.2712 43.491 5 0 Median 1.333 1.2291 2.7989 2 0 Median 0.84127 0.97289 19.899 5 1 Median 0.71063 0.67387 72.549 2 0 Median 0.87205 0.99037 22.968 4 0 Median 1.1647 1.026 13.74 3 0 Plateau 339300000 172220000 167080000 65087000 26332000 38756000 44302000 20656000 23645000 194850000 106040000 88807000 1220400 747430 472990 30939000 16803000 14136000 2904000 1637100 1266900 20384 264;2838 21253 106717;106718;106719;106720;106721;106722;106723;106724;106725;106726;106727;106728;106729;106730;106731;106732;106733;106734;106735;106736;106737;106738 108211;108212;108213;108214;108215;108216;108217;108218;108219;108220;108221;108222;108223;108224;108225;108226;108227 108223 17 LIDWGLAEFYHPAQEYNVR KPHNVMIDHQQKKLRLIDWGLAEFYHPAQE GLAEFYHPAQEYNVRVASRYFKGPELLVDY R L I V R V 2 1 1 1 0 1 2 1 1 1 2 0 0 1 1 0 0 1 2 1 0 0 19 0 2320.1277 P19784;H3BSA1 P19784 174 192 CSNK2A2 Casein kinase II subunit alpha yes no 3 0.014182 22.653 By matching By matching By MS/MS 1 1 2 0.84082 0.85412 20.685 4 Median 1.0783 1.1038 NaN 1 0 Median 0.78529 0.66959 NaN 1 0 Median 0.82508 0.85412 5.8465 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12000000 5835200 6165000 917230 439670 477560 1527100 826650 700480 9555800 4568800 4987000 0 0 0 0 0 0 0 0 0 20385 2069 21254 106739;106740;106741;106742 108228;108229;108230 108230 3 LIDWGLAEFYHPGQEYNVR KPHNVMIDHEHRKLRLIDWGLAEFYHPGQE GLAEFYHPGQEYNVRVASRYFKGPELLVDY R L I V R V 1 1 1 1 0 1 2 2 1 1 2 0 0 1 1 0 0 1 2 1 0 0 19 0 2306.112 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0 P68400 173 191 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3 5.6488E-07 56.817 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 1 3 1 2 1 0.94158 0.89716 13.738 8 Median 1.0264 1.0314 NaN 1 0 Median 0.98195 0.85305 NaN 1 0 Median 0.91503 0.93681 5.0137 3 1 Median 1.0279 0.91179 NaN 1 0 Median 0.87369 0.88252 NaN 1 0 Median 0.73911 0.65156 NaN 1 0 Median 50877000 24210000 26668000 2309500 1053100 1256400 4836600 2457600 2379000 39985000 18594000 21391000 1026800 545590 481240 2486900 1404300 1082600 232330 154770 77562 20386 394 21255 106743;106744;106745;106746;106747;106748;106749;106750;106751 108231;108232;108233;108234;108235;108236;108237;108238 108237 8 LIEADISKR PKLDLLLEKTKELQKLIEADISKRYSGRPV TKELQKLIEADISKRYSGRPVNLMGTSL__ K L I K R Y 1 1 0 1 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 1 1043.5975 Q96JB5;J3QRM1 Q96JB5 485 493 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 2 0.024531 41.876 By MS/MS By MS/MS 1 1 1.1341 1.087 10.602 2 Median 1.0038 1.0085 NaN 1 0 Median 1.2813 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10104000 4759400 5344500 4802800 2606700 2196100 5301100 2152700 3148400 0 0 0 0 0 0 0 0 0 0 0 0 20387 3684 21256 106752;106753 108239;108240 108240 2 LIEAGEQLGFDYGER HQDLRFPRIAFFSTRLIEAGEQLGFDYGER LIEAGEQLGFDYGERFWDIKGKLFSCRCGS R L I E R F 1 1 0 1 0 1 3 3 0 1 2 0 0 1 0 0 0 0 1 0 0 0 15 0 1695.8104 Q9H9B1;A0A1B0GV09 Q9H9B1 1231 1245 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 9.5811E-10 112.15 By matching By MS/MS 1 1 0.60279 0.66623 25.423 2 Median 0.50099 0.55661 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72528 0.79744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12242000 7210700 5031400 8437000 5371600 3065400 0 0 0 3805000 1839100 1965900 0 0 0 0 0 0 0 0 0 20388 3997 21257 106754;106755 108241 108241 1 LIEAVDNMLSNK LENYDFTKFHSLKPKLIEAVDNMLSNKISP KPKLIEAVDNMLSNKISPLMNLISQEETST K L I N K I 1 0 2 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 0 1 0 0 12 0 1345.6912 Q9H223 Q9H223 381 392 EHD4 EH domain-containing protein 4 yes yes 2 0.0012941 83 By MS/MS By matching By MS/MS 1 1 1 0.94102 0.80576 7.3129 3 Median 0.9677 0.91439 NaN 1 1 Median 0.93184 0.80545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94102 0.80576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12137000 5418800 6718700 9094700 3932600 5162100 1724300 891840 832420 0 0 0 1318500 594370 724100 0 0 0 0 0 0 20389 3939 21258 106756;106757;106758 108242;108243;108244 108242 3 LIEDFLAR VNKQLDKMGFNIGVRLIEDFLARSNVGRCH GFNIGVRLIEDFLARSNVGRCHDFRETADV R L I A R S 1 1 0 1 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 975.53893 O43617;A0A087WWM0;A6NKE1 O43617 55 62 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 2 0.0044009 81.784 By MS/MS By MS/MS By MS/MS 2 2 3 1.243 1.1714 14.352 7 Median 1.2747 1.1996 3.3608 2 0 Median 1.396 1.1429 5.8942 2 0 Median 1.1855 1.158 21.116 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97428000 42474000 54954000 68841000 29557000 39283000 15347000 6657600 8689300 13240000 6258700 6981800 0 0 0 0 0 0 0 0 0 20390 1578 21259 106759;106760;106761;106762;106763;106764;106765 108245;108246;108247;108248;108249;108250;108251;108252;108253 108245 9 LIEDNEYTAR GENLVCKVADFGLARLIEDNEYTARQGAKF FGLARLIEDNEYTARQGAKFPIKWTAPEAA R L I A R Q 1 1 1 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1222.583 J3QRU1;P07947;P06241;Q573B4;P06239;P12931 P12931 413 422 YES1;FYN;LCK;SRC Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Lck;Proto-oncogene tyrosine-protein kinase Src no no 2 1.3108E-07 138.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1.0448 1.0062 3.4688 8 Median 1.025 1.0009 4.1673 2 0 Median 1.1398 0.97289 1.894 2 0 Median 1.0297 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0177 1.0128 5.0732 2 2 Median 1.1949 1.0268 NaN 1 0 Median 90571000 45242000 45329000 12023000 6443900 5579300 18168000 8330800 9837200 9357000 4631100 4725900 0 0 0 44808000 22557000 22251000 6215500 3279700 2935800 20391 1984;1354 21260 106766;106767;106768;106769;106770;106771;106772;106773 108254;108255;108256;108257;108258;108259;108260;108261;108262;108263;108264;108265 108259 12 LIEEEEEKQK QLKKLPKVNKELALKLIEEEEEKQKSTWKK ELALKLIEEEEEKQKSTWKKKVKSLPNILT K L I Q K S 0 0 0 0 0 1 5 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1273.6402 Q9BSC4 Q9BSC4 457 466 NOL10 Nucleolar protein 10 yes yes 2;3 0.024929 50.607 By matching By matching By MS/MS By matching 2 2 5 1 0.91402 0.99601 16.852 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8642 1.0013 0.18199 2 0 Median 1.1464 1.1199 20 2 0 Median 0.92934 0.99201 18.655 5 0 Median 0.89894 0.80119 NaN 1 0 Median 9052500 4479600 4573000 0 0 0 0 0 0 1692600 886350 806220 249610 82533 167080 6730800 3328600 3402200 379580 182090 197490 20392 3811 21261 106774;106775;106776;106777;106778;106779;106780;106781;106782;106783 108266;108267 108267 2 LIEEETAR FERQRKIRQQEIEEKLIEEETARRVEELVA QQEIEEKLIEEETARRVEELVAKRVEEELE K L I A R R 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 959.49238 Q9NWB6 Q9NWB6 125 132 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.0078785 85.212 By matching By MS/MS By MS/MS 1 1 2 1.3566 1.1228 12.285 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98483 1.0423 NaN 1 0 Median 1.4912 1.325 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3566 1.1228 NaN 1 1 Median 4882000 2184300 2697700 0 0 0 0 0 0 1171800 611800 560010 1204400 491230 713170 0 0 0 2505800 1081300 1424500 20393 4148 21262 106784;106785;106786;106787 108268;108269;108270 108270 3 LIEESQR HLFYIPGRMCPATQKLIEESQRKMNALFEG RMCPATQKLIEESQRKMNALFEGRRIEFAE K L I Q R K 0 1 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 873.4556 Q9H307 Q9H307 255 261 PNN Pinin yes yes 2 0.031276 49.358 By matching By matching By matching By MS/MS By matching 1 1 1 2 1 1.2185 1.2136 8.9142 6 Median 1.2138 1.2941 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0085 1.0565 NaN 1 0 Median 1.514 1.3006 NaN 1 0 Median 1.1595 1.2136 4.9567 2 0 Median 1.328 1.0918 NaN 1 0 Median 3846900 1798100 2048800 274700 113750 160950 0 0 0 446270 205950 240320 271360 115880 155480 2327100 1118500 1208600 527480 244000 283480 20394 3950 21263 106788;106789;106790;106791;106792;106793 108271 108271 1 LIEEVMIGEDK STFDHPELVKLGSCKLIEEVMIGEDKLIHF GSCKLIEEVMIGEDKLIHFSGVALGEACTI K L I D K L 0 0 0 1 0 0 3 1 0 2 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1274.6428 P78371;F5GWF6;F8VQ14 P78371 348 358 CCT2 T-complex protein 1 subunit beta yes no 2 0.00017674 78.655 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 2 1 1.0443 1.042 65.193 11 Median 1.1473 1.1754 15.548 2 0 Median 1.0348 0.88493 62.895 4 0 Median 2.1857 2.3139 104.19 2 0 Median 1.0962 0.94737 13.468 2 0 Median NaN NaN NaN 0 0 Median 0.53165 0.45142 NaN 1 0 Median 64894000 28770000 36125000 12731000 5453000 7278200 25866000 11667000 14199000 20045000 8628300 11417000 5385200 2395500 2989700 0 0 0 866560 625620 240940 20395 2644 21264;21265 106794;106795;106796;106797;106798;106799;106800;106801;106802;106803;106804 108272;108273;108274;108275;108276 108274 1306 5 LIEFLSK KTQPILDILLKNQAKLIEFLSKFQNDRTED ILLKNQAKLIEFLSKFQNDRTEDEQFNDEK K L I S K F 0 0 0 0 0 0 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 7 0 848.50076 Q9Y376;A0A087X0K1 Q9Y376 302 308 CAB39 Calcium-binding protein 39 yes no 2 0.053242 38.792 By MS/MS By matching By matching By matching 2 2 1 1 1.2039 1.1482 22.044 6 Median 1.3262 1.2454 25.122 2 0 Median 1.2663 1.0839 32.578 2 0 Median 1.3051 1.2644 NaN 1 0 Median 1.0843 0.92794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16095000 6566600 9528600 9623700 3504900 6118800 4779700 2219700 2560100 1496800 738810 757980 194980 103240 91738 0 0 0 0 0 0 20396 4406 21266 106805;106806;106807;106808;106809;106810 108277;108278 108277 2 LIEHPSSSHQMLSEIRPQAIEQVQTQTHVASAPASR MDIQMFGPDALAAVKLIEHPSSSHQMLSEI QVQTQTHVASAPASRAVVAQHVAPPPGIVE K L I S R A 4 2 0 0 0 5 3 0 3 3 2 0 1 0 3 6 2 0 0 2 0 0 36 1 3963.0021 Q68CP9;F8WCU9;F8W108 Q68CP9 467 502 ARID2 AT-rich interactive domain-containing protein 2 yes no 5 5.5428E-10 42.024 By MS/MS 1 0.44168 0.55795 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44168 0.55795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12675000 8177200 4497700 0 0 0 0 0 0 12675000 8177200 4497700 0 0 0 0 0 0 0 0 0 20397 3122 21267 106811 108279;108280 108280 2 LIEIASR NLAEQARAHVENTERLIEIASRELEKAKVA AHVENTERLIEIASRELEKAKVAAANVSVT R L I S R E 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 7 0 800.4756 P11047 P11047 1144 1150 LAMC1 Laminin subunit gamma-1 yes yes 2 0.020057 60.788 By MS/MS 1 1.736 1.4741 NaN 1 Median NaN NaN NaN 0 0 Median 1.736 1.4741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 897610 334260 563350 0 0 0 897610 334260 563350 0 0 0 0 0 0 0 0 0 0 0 0 20398 1949 21268 106812 108281 108281 1 LIEIENFK ______________________________ ______________________________ K L I F K S 0 0 1 0 0 0 2 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 Q14683;V9GYN9 Q14683 6 13 SMC1A Structural maintenance of chromosomes protein 1A yes no 2 0.0030883 101.64 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 6 4 5 1.1549 1.0333 20.186 19 Median 1.3545 1.3037 NaN 1 0 Median 1.2518 1.079 NaN 1 0 Median 0.94754 0.98645 3.3666 2 0 Median 1.3431 1.1517 9.6214 6 0 Median 0.92651 0.96258 30.347 4 0 Median 1.1549 0.97644 19.252 5 0 Median 139950000 66700000 73249000 3462500 1280100 2182500 3775200 1607900 2167300 37462000 19090000 18372000 30264000 12806000 17458000 58132000 29037000 29094000 6852100 2877800 3974300 20399 2889 21269 106813;106814;106815;106816;106817;106818;106819;106820;106821;106822;106823;106824;106825;106826;106827;106828;106829;106830;106831 108282;108283;108284;108285;108286;108287;108288;108289;108290;108291;108292;108293;108294;108295 108288 14 LIEIHGK PSMEAVVSGESCPGKLIEIHGKAGLFLEGQ SGESCPGKLIEIHGKAGLFLEGQIHPELEG K L I G K A 0 0 0 0 0 0 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 808.48069 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7 J3KN36 792 798 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.018479 62.714 By matching By MS/MS By matching By matching 1 2 1 2 0.8605 0.7258 20.448 6 Median 0.73813 0.71798 NaN 1 0 Median 0.9664 0.82449 18.847 2 0 Median 0.87421 0.97294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76312 0.63877 18.879 2 0 Median 7651200 3780300 3870900 269200 168870 100320 6122700 2991200 3131500 759010 362250 396760 0 0 0 0 0 0 500350 257980 242370 20400 117;1301 21270 106832;106833;106834;106835;106836;106837 108296;108297 108296 2 LIEKLDIK VFDAIMNFKKEETAKLIEKLDIKLDSEDKD KKEETAKLIEKLDIKLDSEDKDKEGKPLLK K L I I K L 0 0 0 1 0 0 1 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 8 1 970.60628 P13639 P13639 315 322 EEF2 Elongation factor 2 yes yes 2 0.010917 133.86 By MS/MS 2 1.1741 1.2196 9.2309 2 Median 1.1741 1.2196 9.2309 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18352000 7618600 10734000 18352000 7618600 10734000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20401 1992 21271 106838;106839 108298;108299;108300;108301 108298 4 LIELNYLGTVSLTK QRSLCMDTSLDVYRKLIELNYLGTVSLTKC KLIELNYLGTVSLTKCVLPHMIERKQGKIV K L I T K C 0 0 1 0 0 0 1 1 0 1 4 1 0 0 0 1 2 0 1 1 0 0 14 0 1562.892 Q9Y394;H0YJ66;H0YJR8 Q9Y394 158 171 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 2 3.3396E-05 95.81 By MS/MS 2 1.4535 1.2222 NaN 1 Median NaN NaN NaN 0 0 Median 1.4535 1.2222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9370500 4265000 5105500 0 0 0 9370500 4265000 5105500 0 0 0 0 0 0 0 0 0 0 0 0 20402 4408 21272 106840;106841 108302;108303 108302 2 LIELQAGK LIEDWKKAREEKQKKLIELQAGKKSLEDQV REEKQKKLIELQAGKKSLEDQVEMLRTVKE K L I G K K 1 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 870.51747 K7ELL7;P14314;K7EPW7 K7ELL7 159 166 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0035088 91.906 By matching By MS/MS By matching 1 1 1 1.0996 0.91403 9.88 3 Median 0.92411 0.88322 NaN 1 0 Median 1.0996 0.91403 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1828 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63991000 32583000 31408000 5460300 2814000 2646200 47076000 25139000 21938000 0 0 0 11454000 4630400 6824100 0 0 0 0 0 0 20403 1378 21273 106842;106843;106844 108304;108305 108304 2 LIELQAGKK LIEDWKKAREEKQKKLIELQAGKKSLEDQV EEKQKKLIELQAGKKSLEDQVEMLRTVKEE K L I K K S 1 0 0 0 0 1 1 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 9 1 998.61243 K7ELL7;P14314;K7EPW7 K7ELL7 159 167 PRKCSH Glucosidase 2 subunit beta yes no 2 0.0011093 98.299 By MS/MS By MS/MS 2 2 1.2522 1.2334 20.128 4 Median 1.1338 1.1198 20.796 2 0 Median 1.4786 1.3553 20.462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28518000 12892000 15626000 13233000 6050100 7182800 15286000 6842000 8443500 0 0 0 0 0 0 0 0 0 0 0 0 20404 1378 21274 106845;106846;106847;106848 108306;108307;108308 108308 3 LIEMSLLTDLDR L I D R 0 1 0 2 0 0 1 0 0 1 4 0 1 0 0 1 1 0 0 0 0 0 12 0 1417.7487 REV__Q92556 yes yes 2 0.024215 49.715 By MS/MS 1 17.01 17.334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17.01 17.334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10733000 859020 9874400 0 0 0 0 0 0 10733000 859020 9874400 0 0 0 0 0 0 0 0 0 + 20405 4554 21275 106849 108309 108309 2012 1 LIEPLDYENVIVQK EDSELLISSWLAKPKLIEPLDYENVIVQKK KLIEPLDYENVIVQKKTQILNDCLREMLLF K L I Q K K 0 0 1 1 0 1 2 0 0 2 2 1 0 0 1 0 0 0 1 2 0 0 14 0 1671.9083 A0A088AWN3;A0A0A0MSY4;Q9BZ29;A0A0A0MT38;Q6ZSL5;A0A0D9SFH5 A0A088AWN3 59 72 DOCK9 Dedicator of cytokinesis protein 9 yes no 2 0.067623 22.641 By MS/MS 1 1.3967 1.5495 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3967 1.5495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1317400 569600 747810 0 0 0 0 0 0 1317400 569600 747810 0 0 0 0 0 0 0 0 0 20406 139 21276 106850 108310 108310 1 LIEPPHTDSLR LEMFSAHNLQSVFSRLIEPPHTDSLRASKI VFSRLIEPPHTDSLRASKIRLRDLGALTPD R L I L R A 0 1 0 1 0 0 1 0 1 1 2 0 0 0 2 1 1 0 0 0 0 0 11 0 1276.6776 Q6P158;H7C109 Q6P158 1024 1034 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.00014032 68.069 By MS/MS By matching By matching 1 1 1 0.73754 0.67446 16.422 2 Median 0.60707 0.60052 NaN 1 0 Median 0.89604 0.75751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8462700 5446300 3016400 2766200 1916900 849300 4560000 2784500 1775500 1136400 744860 391570 0 0 0 0 0 0 0 0 0 20407 3148 21277 106851;106852;106853 108311 108311 1 LIEQAFR GKGSFWRIDPASESKLIEQAFRKRRPRGVP IDPASESKLIEQAFRKRRPRGVPCFRTPLG K L I F R K 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 875.4865 Q01167;E9PM37;E9PPI7 Q01167 342 348 FOXK2 Forkhead box protein K2 yes no 2 0.0026877 118.06 By matching By matching By MS/MS By MS/MS 1 2 2 3 1.2799 1.0947 101.99 8 Median 0.92592 0.87513 NaN 1 0 Median 1.4037 1.2065 14.72 2 0 Median 1.566 1.5828 57.549 2 0 Median 1.277 1.1002 165.11 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27084000 11257000 15827000 6333800 2862300 3471500 4530800 2052200 2478600 12672000 5169700 7502700 3547000 1172400 2374600 0 0 0 0 0 0 20408 2684 21278 106854;106855;106856;106857;106858;106859;106860;106861 108312;108313;108314;108315;108316 108313 5 LIEQAPIQMGEEAVR HSAVVDFEALNVIVRLIEQAPIQMGEEAVR LIEQAPIQMGEEAVRWAKLVIPLVVHSAQK R L I V R W 2 1 0 0 0 2 3 1 0 2 1 0 1 0 1 0 0 0 0 1 0 0 15 0 1682.8662 Q5UIP0;H7BZN3 Q5UIP0 169 183 RIF1 Telomere-associated protein RIF1 yes no 2 4.6482E-09 137.59 By MS/MS By matching By MS/MS 3 1 1 0.64376 0.55894 66.991 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72352 0.76215 93.899 3 1 Median 0.64376 0.55894 NaN 1 0 Median 0.41795 0.43632 NaN 1 0 Median NaN NaN NaN 0 0 Median 38877000 26448000 12429000 0 0 0 0 0 0 33017000 21749000 11268000 444600 242170 202440 5415300 4457200 958070 0 0 0 20409 3109 21279;21280 106862;106863;106864;106865;106866 108317;108318;108319;108320;108321 108317 1664 5 LIEQEEYLNVQVK EMRNTLEKFTASIQRLIEQEEYLNVQVKEL QRLIEQEEYLNVQVKELEANVLATAPDKKK R L I V K E 0 0 1 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 1 2 0 0 13 0 1603.8457 Q9NTJ3;E9PD53 Q9NTJ3 828 840 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 1.31E-06 98.249 By MS/MS By MS/MS 1 1 0.91128 0.93294 10.176 2 Median 1.0376 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8003 0.86816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12885000 6441900 6443100 8133900 3679700 4454200 0 0 0 4751100 2762200 1988900 0 0 0 0 0 0 0 0 0 20410 4108 21281 106867;106868 108322;108323;108324;108325 108322 4 LIEQYALR KLRQENIELGEKLKKLIEQYALREEHIDKV LGEKLKKLIEQYALREEHIDKVFKHKELQQ K L I L R E 1 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1004.5655 Q9NUQ3 Q9NUQ3 279 286 TXLNG Gamma-taxilin yes yes 2 0.010382 58.981 By MS/MS By matching By matching 2 1 1 1.3546 1.083 17.118 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4689 1.2475 15.199 2 0 Median 0.87116 0.92277 NaN 1 0 Median 1.3683 1.0469 NaN 1 0 Median 7051400 3322500 3728800 0 0 0 0 0 0 0 0 0 3491200 1448500 2042600 2812600 1565900 1246700 747600 308140 439460 20411 4118 21282 106869;106870;106871;106872 108326 108326 1 LIEQYELR KLRQENMELAERLKKLIEQYELREEHIDKV LAERLKKLIEQYELREEHIDKVFKHKDLQQ K L I L R E 0 1 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1062.571 P40222 P40222 312 319 TXLNA Alpha-taxilin yes yes 2 0.0030883 101.64 By MS/MS By MS/MS 1 1 1.1528 1.0663 20.749 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.208 1.2349 NaN 1 0 Median 1.1001 0.92083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11876000 4797800 7078400 0 0 0 0 0 0 8060000 3119600 4940400 3816200 1678200 2138000 0 0 0 0 0 0 20412 2284 21283 106873;106874 108327;108328;108329 108327 3 LIEQYELREEHIDK KLRQENMELAERLKKLIEQYELREEHIDKV KLIEQYELREEHIDKVFKHKDLQQQLVDAK K L I D K V 0 1 0 1 0 1 4 0 1 2 2 1 0 0 0 0 0 0 1 0 0 0 14 1 1813.921 P40222 P40222 312 325 TXLNA Alpha-taxilin yes yes 3;4 0.00037247 50.145 By matching By MS/MS By MS/MS 1 2 5 1.1843 1.1505 37.806 8 Median 0.44087 0.43242 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9749 1.0353 23.801 2 0 Median 1.2952 1.1876 15.303 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36146000 16531000 19615000 2333000 1882800 450210 0 0 0 17047000 7359600 9687300 16766000 7288300 9478000 0 0 0 0 0 0 20413 2284 21284 106875;106876;106877;106878;106879;106880;106881;106882 108330;108331;108332;108333;108334;108335;108336;108337;108338;108339 108336 10 LIESAEELIR KRCFAHYKQVKKLNKLIESAEELIRDGRYT KKLNKLIESAEELIRDGRYTDATSKYESVM K L I I R D 1 1 0 0 0 0 3 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1171.6449 Q13217;X6R9L0 Q13217 271 280 DNAJC3 DnaJ homolog subfamily C member 3 yes no 2 0.0049654 51.346 By MS/MS 1 1.3134 1.126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3134 1.126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4035800 1683600 2352200 0 0 0 0 0 0 0 0 0 4035800 1683600 2352200 0 0 0 0 0 0 20414 2797 21285 106883 108340 108340 1 LIESLFTIQK LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ VTNLRLIESLFTIQKMIMDQEKQEGVSTKC R L I Q K M 0 0 0 0 0 1 1 0 0 2 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1190.6911 Q12789;H3BU37 Q12789 630 639 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0028032 58.981 By matching By matching By MS/MS By matching By matching By matching 1 1 4 2 2 2 1.1303 1.1629 14.502 12 Median 1.3088 1.2395 NaN 1 0 Median 1.068 0.94744 NaN 1 0 Median 1.0054 1.1097 14.954 4 0 Median 1.2937 1.1884 1.6128 2 0 Median 0.89296 0.92932 2.4953 2 0 Median 1.4807 1.2926 6.8422 2 0 Median 18251000 8899600 9351300 922070 308100 613970 503430 334600 168820 14476000 7065800 7410400 288710 118500 170210 1886500 1007900 878620 174110 64751 109360 20415 2758 21286 106884;106885;106886;106887;106888;106889;106890;106891;106892;106893;106894;106895 108341;108342 108342 2 LIESSLGSIATK QPQTTDAEATIFFTRLIESSLGSIATKFNF FTRLIESSLGSIATKFNFFIHNLAQLRFSG R L I T K F 1 0 0 0 0 0 1 1 0 2 2 1 0 0 0 3 1 0 0 0 0 0 12 0 1217.6867 O00443 O00443 1374 1385 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.0010777 57.348 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.93289 0.93905 9.473 4 Median 0.85 0.81757 NaN 1 0 Median 1.1611 1.0279 NaN 1 0 Median 0.85035 0.94689 NaN 1 0 Median 1.0234 0.93128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13401000 6540200 6861100 4284200 1997400 2286900 2293000 1228300 1064700 5559200 2726500 2832600 1265000 587980 676990 0 0 0 0 0 0 20416 1465 21287 106896;106897;106898;106899 108343;108344;108345 108343 3 LIETTANMNSSYVK SALIVPKEMIKKAKKLIETTANMNSSYVKF KLIETTANMNSSYVKFLKQATDNSEISSAT K L I V K F 1 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 2 0 1 1 0 0 14 0 1569.7709 P46100;A0A096LNW1;A0A096LNL9;A0A096LNN3 P46100 359 372 ATRX Transcriptional regulator ATRX yes no 2 1.3538E-05 150.94 By MS/MS By matching 2 2 0.94674 0.94778 12.586 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91529 0.94778 0.064617 2 0 Median 1.1476 0.96843 21.693 2 0 Median 31250000 15944000 15306000 0 0 0 0 0 0 0 0 0 0 0 0 29243000 15035000 14208000 2006300 908020 1098300 20417 2339 21288 106900;106901;106902;106903 108346;108347;108348 108346 3 LIEVDDER ______________________________ PATGCQKLIEVDDERKLRTFYEKRMATEVA K L I E R K 0 1 0 2 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 987.48729 P62753;A2A3R7 P62753 15 22 RPS6 40S ribosomal protein S6 yes no 2 0.0023352 124.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 4 1.2161 1.0387 15.607 11 Median 0.87641 0.85724 24.305 2 0 Median 1.3056 1.0858 15.569 2 0 Median 1.2147 1.1886 NaN 1 0 Median 1.3191 1.1005 NaN 1 0 Median 1.0394 1.029 NaN 1 0 Median 1.4093 1.1201 11.944 4 0 Median 138510000 62062000 76448000 38772000 18277000 20494000 63895000 27935000 35961000 8922400 4248000 4674400 9038300 3685700 5352600 3607000 1827100 1779900 14275000 6089100 8186100 20418 2596 21289 106904;106905;106906;106907;106908;106909;106910;106911;106912;106913;106914 108349;108350;108351;108352;108353;108354;108355;108356;108357;108358;108359;108360;108361 108350 13 LIEVDDERK ______________________________ ATGCQKLIEVDDERKLRTFYEKRMATEVAA K L I R K L 0 1 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1115.5823 P62753;A2A3R7 P62753 15 23 RPS6 40S ribosomal protein S6 yes no 2 0.0022514 79.906 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1358 1.0135 18.879 4 Linear 1.0524 1.0434 NaN 1 0 Median 1.1208 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94704 1.0136 NaN 1 0 Median 0.76737 0.70223 NaN 1 0 Median 5892100 2929900 2962200 2156500 1073000 1083500 2741000 1436100 1304900 0 0 0 0 0 0 523740 204930 318810 470810 215840 254970 20419 2596 21290 106915;106916;106917;106918 108362;108363;108364;108365 108365 4 LIEVNGQNVEGLR PGSPAARSGLRAQDRLIEVNGQNVEGLRHA DRLIEVNGQNVEGLRHAEVVASIKAREDEA R L I L R H 0 1 2 0 0 1 2 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1439.7732 Q15599;H3BUQ9;H3BN50;H3BQS0 Q15599 196 208 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 2 2.1218E-06 159.4 By MS/MS By MS/MS 1 1 0.8656 0.84496 5.572 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74231 0.81232 NaN 1 0 Median 1.0094 0.87892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27605000 12649000 14956000 0 0 0 0 0 0 25301000 11543000 13758000 2303600 1105400 1198300 0 0 0 0 0 0 20420 2958 21291 106919;106920 108366;108367 108366 2 LIEVQSNSLHK ENEILTVHYLLEQIKLIEVQSNSLHKISVD EQIKLIEVQSNSLHKISVDVQRPTGSFSID K L I H K I 0 0 1 0 0 1 1 0 1 1 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1266.6932 Q7Z2K6;E7ER77 Q7Z2K6 146 156 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2;3 2.7222E-06 120.06 By MS/MS By MS/MS 2 4 1.3863 1.3028 14.057 5 Median 1.1945 1.1536 17.195 2 0 Median 1.5875 1.385 10.768 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27854000 12092000 15762000 4904300 2429500 2474800 22950000 9662600 13287000 0 0 0 0 0 0 0 0 0 0 0 0 20421 883 21292 106921;106922;106923;106924;106925;106926 108368;108369;108370;108371;108372;108373;108374;108375 108373 8 LIEYYQQLAQK GWQEPENPHTQRMNKLIEYYQQLAQKEKVE RMNKLIEYYQQLAQKEKVERDRKKLARRR_ K L I Q K E 1 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 2 0 0 0 11 0 1395.7398 E5RGG1;H9KVE0;Q9UJW0;E5RK21 E5RGG1 90 100 DCTN4 Dynactin subunit 4 yes no 2 0.00013475 102.51 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.2213 1.0639 9.1306 5 Median 1.0802 1.0222 16.902 2 1 Median 1.2976 1.1112 NaN 1 0 Median 1.0738 1.0639 NaN 1 0 Median 1.2213 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24611000 11856000 12755000 13084000 6634300 6449300 2571400 1079200 1492200 6917000 3212700 3704300 2039100 930310 1108800 0 0 0 0 0 0 20422 838 21293 106927;106928;106929;106930;106931 108376;108377;108378;108379 108377 4 LIFAGKQLEDGR AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS QQRLIFAGKQLEDGRTLSDYNIQKESTLHL R L I G R T 1 1 0 1 0 1 1 2 0 1 2 1 0 1 0 0 0 0 0 0 0 0 12 1 1345.7354 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422;F5GZ39 P0CG48 43 54 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2;3 0.00015777 77.124 By MS/MS By matching By MS/MS By matching 1 1 3 1 1.0153 1.0202 27.336 6 Median NaN NaN NaN 0 0 Median 1.2419 1.0743 NaN 1 0 Median 1.1276 1.3933 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6933 0.77817 20.016 3 1 Median 1.2711 1.128 NaN 1 0 Median 30026000 17014000 13012000 0 0 0 437570 223740 213830 315460 136930 178540 0 0 0 26588000 15613000 10974000 2684800 1039700 1645100 20423 606 21294 106932;106933;106934;106935;106936;106937 108380;108381;108382;108383 108381 4 LIFDNLK DDNFASIVTGVEEGRLIFDNLKKSIAYTLT VTGVEEGRLIFDNLKKSIAYTLTSNIPEIT R L I L K K 0 0 1 1 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 861.496 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1;Q13733;P20648;P54707 P05023 767 773 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 yes no 2 0.040961 44.611 By MS/MS By matching 1 1 1.1068 1.0816 17.451 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99496 0.95606 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2312 1.2237 NaN 1 0 Median NaN NaN NaN 0 0 Median 11092000 5121000 5971500 0 0 0 0 0 0 7053700 3412700 3641000 0 0 0 4038700 1708200 2330500 0 0 0 20424 1857 21295 106938;106939 108384;108385 108384 2 LIFDNLKK DDNFASIVTGVEEGRLIFDNLKKSIAYTLT TGVEEGRLIFDNLKKSIAYTLTSNIPEITP R L I K K S 0 0 1 1 0 0 0 0 0 1 2 2 0 1 0 0 0 0 0 0 0 0 8 1 989.59097 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1;Q13733;P20648;P54707 P05023 767 774 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 yes no 2 0.0050841 87.754 By MS/MS By MS/MS 4 4 1.0949 1.152 9.0696 8 Median 1.092 1.1643 9.9909 4 0 Median 1.1314 1.0861 7.7778 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153640000 73260000 80385000 73817000 35361000 38456000 79828000 37899000 41929000 0 0 0 0 0 0 0 0 0 0 0 0 20425 1857 21296 106940;106941;106942;106943;106944;106945;106946;106947 108386;108387;108388;108389;108390;108391;108392;108393;108394;108395;108396;108397 108391 12 LIFQMPQNK HLFYLLQTNPTYLAKLIFQMPQNKSTKFMD PTYLAKLIFQMPQNKSTKFMDSVIFTLYNY K L I N K S 0 0 1 0 0 2 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 9 0 1117.5954 P46940;A0A0J9YXZ5;H0YLE8;E7EWC2;F5H7S7;Q13576;E9PDT6;F2Z2E2;Q86VI3 P46940 989 997 IQGAP1;IQGAP2;IQGAP3 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2;Ras GTPase-activating-like protein IQGAP3 no no 2 0.0035524 81.297 By MS/MS By MS/MS 2 1 1.0389 0.98768 1.8856 3 Median 1.0363 0.99048 0.4007 2 2 Median 1.0825 0.95901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108530000 53696000 54836000 95650000 47438000 48212000 12881000 6257500 6623500 0 0 0 0 0 0 0 0 0 0 0 0 20426 2350;901;989 21297 106948;106949;106950 108398;108399;108400;108401 108399 4 LIFSTITSK DRKIEFPLPDRRQKRLIFSTITSKMNLSEE DRRQKRLIFSTITSKMNLSEEVDLEDYVAR R L I S K M 0 0 0 0 0 0 0 0 0 2 1 1 0 1 0 2 2 0 0 0 0 0 9 0 1008.5855 P43686 P43686 343 351 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS 2 2 2 1.2053 1.0668 27.776 6 Median 1.1383 1.0451 7.7239 2 0 Median 1.2949 1.1243 12.246 2 0 Median 1.0461 1.0182 59.518 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44225000 20868000 23357000 29006000 13974000 15031000 8086700 3583600 4503100 7133200 3310500 3822700 0 0 0 0 0 0 0 0 0 20427 2327 21298 106951;106952;106953;106954;106955;106956 108402;108403;108404;108405;108406;108407;108408;108409 108402 8 LIFTDGSR SDPVDGSISRNQGLRLIFTDGSRIVFRLSG SRNQGLRLIFTDGSRIVFRLSGTGSAGATI R L I S R I 0 1 0 1 0 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 0 0 8 0 907.47633 P36871;A0A3B3ITK7 P36871 492 499 PGM1 Phosphoglucomutase-1 yes no 2 0.0028985 131.04 By MS/MS By MS/MS 2 2 1.4651 1.2926 27.232 4 Median 1.2639 1.1896 40.509 2 0 Median 1.4864 1.2926 22.69 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41417000 19183000 22234000 28420000 13919000 14501000 12997000 5264300 7733000 0 0 0 0 0 0 0 0 0 0 0 0 20428 2262 21299 106957;106958;106959;106960 108410;108411;108412;108413 108410 4 LIFYDLR KVAGRIHAKRASGGKLIFYDLRGEGVKLQV AKRASGGKLIFYDLRGEGVKLQVMANSRNY K L I L R G 0 1 0 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 7 0 938.52255 Q15046;H3BVA8 Q15046 142 148 KARS Lysine--tRNA ligase yes no 2 0.021369 59.205 By MS/MS By matching By matching By matching 2 1 1 1 1.2259 1.1797 20.806 5 Median 1.2785 1.2292 5.8153 2 0 Median NaN NaN NaN 0 0 Median 1.4809 1.5704 NaN 1 0 Median 1.0872 0.92177 NaN 1 0 Median 0.95176 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median 14420000 6581300 7839100 11407000 5254500 6152400 0 0 0 1845600 758000 1087600 403080 172930 230150 764800 395860 368950 0 0 0 20429 2919 21300 106961;106962;106963;106964;106965 108414;108415;108416;108417 108414 4 LIFYINHDFK HERFSDHYYDTSWKRLIFYINHDFKLEREV TSWKRLIFYINHDFKLEREVWKRLHDEGII R L I F K L 0 0 1 1 0 0 0 0 1 2 1 1 0 2 0 0 0 0 1 0 0 0 10 0 1308.6867 Q9NSC7 Q9NSC7 561 570 ST6GALNAC1 Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 yes yes 2 0.001468 65.252 By MS/MS By matching 1 1 0.9522 0.93224 14.815 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96672 1.0352 NaN 1 0 Median 0.93789 0.83952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12767000 5993800 6773700 0 0 0 0 0 0 8420200 3891100 4529100 4347300 2102700 2244600 0 0 0 0 0 0 20430 4101 21301 106966;106967 108418 108418 1 LIGEMNSLFDEVR LSPEEIQMFEQENQRLIGEMNSLFDEVRQI QRLIGEMNSLFDEVRQIEGRVVEISRLQEI R L I V R Q 0 1 1 1 0 0 2 1 0 1 2 0 1 1 0 1 0 0 0 1 0 0 13 0 1521.7497 D6RF48;Q9P2W9 D6RF48 242 254 STX18 Syntaxin-18 yes no 2 0.0011407 58.676 By MS/MS 1 1.0894 0.93461 NaN 1 Median NaN NaN NaN 0 0 Median 1.0894 0.93461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1193700 555970 637720 0 0 0 1193700 555970 637720 0 0 0 0 0 0 0 0 0 0 0 0 20431 824 21302 106968 108419;108420 108420 2 LIGEYGLR PRRPFEKSRLDQELKLIGEYGLRNKREVWR RLDQELKLIGEYGLRNKREVWRVKFTLAKI K L I L R N 0 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 31 38 RPS9 40S ribosomal protein S9 yes no 2 0.0022895 134.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 4 1 1.1689 1.1312 15.098 12 Median 1.0478 1.0089 6.6484 2 1 Median 1.286 1.111 10.673 2 0 Median 1.0845 1.1227 3.7503 2 0 Median 0.99731 0.86875 NaN 1 0 Median 1.2392 1.2865 11.211 4 0 Median 1.6631 1.3834 NaN 1 0 Median 694700000 324430000 370270000 403670000 194020000 209640000 81688000 36829000 44859000 59666000 27961000 31705000 471090 216320 254760 148740000 65187000 83550000 476120 215940 260170 20432 2345 21303 106969;106970;106971;106972;106973;106974;106975;106976;106977;106978;106979;106980;106981 108421;108422;108423;108424;108425;108426;108427;108428;108429;108430;108431;108432;108433;108434;108435 108432 15 LIGFMRPENGNPQQMQQELQR GPLGNPNTTAKVQQRLIGFMRPENGNPQQM PENGNPQQMQQELQRKFHEAQLSEKISLQA R L I Q R K 0 2 2 0 0 5 2 2 0 1 2 0 2 1 2 0 0 0 0 0 0 0 21 1 2513.2267 O75694;E9PF10 O75694 745 765 NUP155 Nuclear pore complex protein Nup155 yes no 3 1.0811E-25 130.36 By MS/MS By MS/MS By MS/MS 1 3 3 0.87465 1.0172 9.6973 7 Median 1.0149 1.1276 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75828 0.92223 7.7773 3 0 Median 1.039 1.0172 10.117 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59734000 29006000 30727000 7251600 3288100 3963600 0 0 0 48191000 23475000 24716000 4291100 2243000 2048100 0 0 0 0 0 0 20433 1692 21304;21305;21306 106982;106983;106984;106985;106986;106987;106988 108436;108437;108438;108439;108440;108441;108442 108438 559;560 7 LIGHHGAEDATDAFR YDISRWAQRHPGGSRLIGHHGAEDATDAFR LIGHHGAEDATDAFRAFHQDLNFVRKFLQP R L I F R A 3 1 0 2 0 0 1 2 2 1 1 0 0 1 0 0 1 0 0 0 0 0 15 0 1608.7645 E9PS00;Q9Y5Q0 E9PS00 61 75 FADS3 Fatty acid desaturase 3 yes no 3 9.3281E-07 89.992 By matching By MS/MS 1 1 1.0925 0.98184 18.94 2 Median 1.1123 1.1226 NaN 1 0 Median 1.073 0.85877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23482000 11709000 11772000 3438800 1871500 1567300 20043000 9837900 10205000 0 0 0 0 0 0 0 0 0 0 0 0 20434 986 21307 106989;106990 108443;108444 108444 2 LIGLMNNEAAQESTR SAESCATWKVQKEEKLIGLMNNEAAQESTR LIGLMNNEAAQESTRRRQKYQESQEPLNEV K L I T R R 2 1 2 0 0 1 2 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 15 0 1645.8094 Q86Y07 Q86Y07 384 398 VRK2 Serine/threonine-protein kinase VRK2 yes yes 2 7.2774E-08 101.93 By MS/MS 1 0.88596 0.92336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88596 0.92336 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3542700 1881200 1661500 0 0 0 0 0 0 3542700 1881200 1661500 0 0 0 0 0 0 0 0 0 20435 3303 21308 106991 108445 108445 1 LIGNLSEK TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE HGDQVFKLIGNLSEKDMSMLEERIKRSAKR K L I E K D 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 872.49673 Q14008 Q14008 1404 1411 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.021869 45.335 By matching By MS/MS By matching 1 1 1 1.0907 1.0391 3.145 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93261 1.0395 NaN 1 0 Median 1.0907 0.9842 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2127 1.0391 NaN 1 0 Median 10097000 5457600 4639100 0 0 0 0 0 0 3476000 2007100 1468900 4039800 2203200 1836600 0 0 0 2580900 1247300 1333700 20436 2850 21309 106992;106993;106994 108446 108446 1 LIGNLSEKDMSMLEER TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE IGNLSEKDMSMLEERIKRSAKRPSAAPIKQ K L I E R I 0 1 1 1 0 0 3 1 0 1 3 1 2 0 0 2 0 0 0 0 0 0 16 1 1863.907 Q14008 Q14008 1404 1419 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 5.1412E-08 103.88 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 2 1 1 1.198 1.1308 15.859 8 Median 1.104 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1972 1.3992 25.476 3 1 Plateau 1.2024 1.1608 4.6269 2 0 Median 1.2472 1.4158 NaN 1 0 Median 1.2476 1.1052 NaN 1 0 Median 53610000 25466000 28144000 9653600 5578100 4075400 0 0 0 32810000 14840000 17970000 8684300 4034600 4649800 2247000 926980 1320100 215470 86093 129380 20437 2850 21310;21311 106995;106996;106997;106998;106999;107000;107001;107002 108447;108448;108449;108450;108451;108452;108453;108454 108451 1533;1534 8 LIGNMALLPIR ______________________________ PDTKLIGNMALLPIRSQFKGPAPRETKDTD K L I I R S 1 1 1 0 0 0 0 1 0 2 3 0 1 0 1 0 0 0 0 0 0 0 11 0 1209.7267 O15145;C9JZD1;F8VR50 O15145 15 25 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2 0.00011412 121.62 By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 2 3 1 1 0.96967 0.94248 10.239 13 Median 0.96279 0.91382 6.9475 6 0 Median 1.1807 0.97982 1.9055 2 0 Median 0.95515 0.91721 16.42 3 0 Median 1.156 0.96006 NaN 1 0 Median 1.0046 1.0627 NaN 1 0 Median NaN NaN NaN 0 0 Median 177670000 88289000 89380000 107910000 54350000 53564000 10108000 4492000 5616300 51449000 25655000 25794000 5996500 2742500 3254000 2201400 1049500 1151900 0 0 0 20438 1527 21312;21313 107003;107004;107005;107006;107007;107008;107009;107010;107011;107012;107013;107014;107015 108455;108456;108457;108458;108459;108460;108461;108462;108463;108464;108465;108466;108467;108468;108469;108470;108471;108472;108473;108474;108475;108476;108477;108478 108473 495 24 LIGQIVSSITASLR RNLDIERPTYTNLNRLIGQIVSSITASLRF RLIGQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 1 0 3 2 0 0 0 0 3 1 0 0 1 0 0 14 0 1456.8613 Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 Q71U36 230 243 TUBA1A;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-3E chain yes no 2 1.5467E-05 149.96 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 12 2 1 1 2 1.6479 1.3753 35.85 18 Median 0.83813 0.83233 NaN 1 0 Median 1.6479 1.3753 22.798 12 0 Median 1.7931 1.9966 98.37 2 0 Median 2.1614 1.9111 NaN 1 0 Median 1.2114 1.2183 NaN 1 0 Median 1.8449 1.4352 NaN 1 0 Median 170870000 64634000 106230000 1565200 853320 711920 162520000 60535000 101980000 5584400 2656100 2928200 77041 26639 50402 816250 464550 351700 308040 98132 209910 20439 3212 21314 107016;107017;107018;107019;107020;107021;107022;107023;107024;107025;107026;107027;107028;107029;107030;107031;107032;107033;107034 108479;108480;108481;108482;108483;108484;108485;108486;108487;108488;108489;108490;108491;108492;108493 108491 15 LIGQLNLK LFVGGELIDPADDRKLIGQLNLKDKSLITA DPADDRKLIGQLNLKDKSLITAKLTQISSN K L I L K D 0 0 1 0 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 897.56475 Q93008;O00507 Q93008 949 956 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0048035 79.454 By matching By MS/MS 2 3 1.2534 1.1063 8.0497 5 Median 1.0492 1.0226 4.9731 2 0 Median 1.289 1.1695 4.5146 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22717000 10463000 12254000 7916000 4051700 3864300 14801000 6411500 8389400 0 0 0 0 0 0 0 0 0 0 0 0 20440 3573 21315 107035;107036;107037;107038;107039 108494;108495;108496 108494 3 LIGTATVALK LGIIVKDFETIGQNKLIGTATVALKDLTGD IGQNKLIGTATVALKDLTGDQSRSLPYKLI K L I L K D 2 0 0 0 0 0 0 1 0 1 2 1 0 0 0 0 2 0 0 1 0 0 10 0 985.61718 Q9NZM1 Q9NZM1 80 89 MYOF Myoferlin yes yes 2 0.012347 41.448 By matching By MS/MS 1 1 1.0924 1.0075 44.51 2 Median 1.441 1.3802 NaN 1 0 Median 0.8282 0.73549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6316800 3038900 3277900 2990100 1348800 1641300 3326700 1690100 1636600 0 0 0 0 0 0 0 0 0 0 0 0 20441 4192 21316 107040;107041 108497 108497 1 LIGTAVPQR PPPNPGDQIFNKSKKLIGTAVPQRTSPTGP FNKSKKLIGTAVPQRTSPTGPKNMQTSGRL K L I Q R T 1 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 9 0 953.56581 Q9UPY8;C9JB30 Q9UPY8 152 160 MAPRE3 Microtubule-associated protein RP/EB family member 3 yes no 2 0.0083623 67.032 By MS/MS 1 0.84479 0.70468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84479 0.70468 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1951800 927230 1024500 0 0 0 0 0 0 0 0 0 1951800 927230 1024500 0 0 0 0 0 0 20442 686 21317 107042 108498 108498 1 LIGVANQK EEALENVIKSTKPGKLIGVANQKMIELLAD KSTKPGKLIGVANQKMIELLADNINLGDPS K L I Q K M 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 841.50215 Q9H583;Q5T3Q7 Q9H583 656 663 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0055194 75.311 By matching By MS/MS By MS/MS 1 1 2 1.22 1.0679 11.644 4 Median 1.5794 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1911 1.2547 NaN 1 0 Median 1.1761 0.99464 6.7061 2 0 Median 5706700 2710300 2996400 109910 24919 84988 0 0 0 0 0 0 0 0 0 3072200 1451500 1620700 2524600 1233800 1290800 20443 3086 21318 107043;107044;107045;107046 108499;108500;108501 108500 3 LIGVPESDVENGTK SLQEIWDYVKRPNLRLIGVPESDVENGTKL RLIGVPESDVENGTKLENTLQDIIQENFPN R L I T K L 0 0 1 1 0 0 2 2 0 1 1 1 0 0 1 1 1 0 0 2 0 0 14 0 1456.7409 Q9UN81 Q9UN81 160 173 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 0.028908 42.001 By MS/MS 1 0.65518 0.71624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65518 0.71624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2676200 1554300 1121800 0 0 0 0 0 0 2676200 1554300 1121800 0 0 0 0 0 0 0 0 0 20444 4340 21319 107047 108502 108502 1 LIGWGQIR GEKIALSRRVEKHWRLIGWGQIRRGVTIKP RVEKHWRLIGWGQIRRGVTIKPTVDDD___ R L I I R R 0 1 0 0 0 1 0 2 0 2 1 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 P41091;Q2VIR3 P41091 453 460 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.0048035 79.454 By MS/MS By matching By MS/MS By matching By matching By MS/MS 4 4 2 3 1 3 1.2241 1.08 18.753 17 Median 1.1041 1.0947 30.644 4 1 Median 1.2874 0.97991 7.017 4 0 Linear 1.4058 1.385 2.2704 2 0 Median 1.2544 1.08 5.5549 3 0 Median 1.2732 1.2801 NaN 1 0 Median 1.2497 1.0427 11.824 3 0 Median 124090000 52992000 71098000 22608000 10581000 12028000 11432000 5292400 6140000 56032000 21975000 34057000 21448000 9102000 12346000 1899300 791950 1107400 10669000 5249700 5419500 20445 2295 21320 107048;107049;107050;107051;107052;107053;107054;107055;107056;107057;107058;107059;107060;107061;107062;107063;107064 108503;108504;108505;108506;108507;108508;108509;108510 108509 8 LIHEPSAALLAYGIGQDSPTGK ALGEAARAAGFNVLRLIHEPSAALLAYGIG ALLAYGIGQDSPTGKSNILVFKLGGTSLSL R L I G K S 3 0 0 1 0 1 1 3 1 2 3 1 0 0 2 2 1 0 1 0 0 0 22 0 2237.1692 Q0VDF9 Q0VDF9 169 190 HSPA14 Heat shock 70 kDa protein 14 yes yes 3 0.015304 15.896 By matching By MS/MS 1 1 1.1146 1.0115 6.7749 2 Median 1.0055 0.9642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2357 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5243300 2039200 3204000 2853900 992410 1861500 0 0 0 0 0 0 2389400 1046800 1342600 0 0 0 0 0 0 20446 2750 21321 107065;107066 108511 108511 1 LIHGLSMSMDSEEAMINK KDVFQKFYARMLAKRLIHGLSMSMDSEEAM GLSMSMDSEEAMINKLKQACGYEFTSKLHR R L I N K L 1 0 1 1 0 0 2 1 1 2 2 1 3 0 0 3 0 0 0 0 0 0 18 0 2004.9319 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 456 473 CUL2 Cullin-2 yes no 3 0.001209 27.496 By MS/MS 1 0.85362 0.79979 NaN 1 Median 0.85362 0.79979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5335000 2791100 2543900 5335000 2791100 2543900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20447 196 21322 107067 108512 108512 1 LIHITIEPLYR YYAASHKLIALAICKLIHITIEPLYRRVGV AICKLIHITIEPLYRRVGVPKGAKGSPVNA K L I Y R R 0 1 0 0 0 0 1 0 1 3 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1366.7973 Q8NI27;A0A0C4DG98 Q8NI27 386 396 THOC2 THO complex subunit 2 yes no 3 0.0068296 33.229 By MS/MS By matching 1 1 0.94477 0.92957 3.1475 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81894 0.90911 NaN 1 0 Median 1.09 0.95049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2120000 1176000 943950 0 0 0 0 0 0 2063300 1151800 911490 56692 24234 32458 0 0 0 0 0 0 20448 3448 21323 107068;107069 108513 108513 1 LIHLEIKPAIR FKVSHKPSGLVMARKLIHLEIKPAIRNQII MARKLIHLEIKPAIRNQIIRELQVLHECNS K L I I R N 1 1 0 0 0 0 1 0 1 3 2 1 0 0 1 0 0 0 0 0 0 0 11 1 1301.8183 P36507;A0A1B0GUL7;G5E9C7;Q02750 Q02750 98 108 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 2 0.001394 95.099 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29411000 29411000 0 0 0 0 0 0 0 29411000 29411000 0 0 0 0 0 0 0 0 0 0 20449 2256;2700 21324 107070 108514 108514 1 LIHPDEDISLEER TSKPATLTTTSATSKLIHPDEDISLEERRA SKLIHPDEDISLEERRAQLPKYQRNLPRPG K L I E R R 0 1 0 2 0 0 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 0 13 0 1564.7733 J3QRS9;X6R4W8;O43670;J3KS31 J3QRS9 379 391 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 2;3 1.7171E-07 168.74 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 4 1 2 0.87307 0.76074 19.115 12 Median NaN NaN NaN 0 0 Median 0.88198 0.76564 21.295 3 0 Median 0.78576 0.76738 3.8642 2 0 Median 0.94556 0.80179 8.6901 4 0 Median 1.0302 1.0369 NaN 1 0 Median 0.65833 0.56551 3.9345 2 0 Median 277370000 146900000 130470000 0 0 0 4983900 2810300 2173600 223290000 119610000 103680000 45468000 22496000 22971000 2167600 1191700 975960 1464800 791860 672980 20450 1353 21325 107071;107072;107073;107074;107075;107076;107077;107078;107079;107080;107081;107082 108515;108516;108517;108518;108519;108520;108521;108522;108523;108524;108525;108526;108527;108528;108529;108530 108519 15 LIHPDEDISLEERR TSKPATLTTTSATSKLIHPDEDISLEERRA KLIHPDEDISLEERRAQLPKYQRNLPRPGQ K L I R R A 0 2 0 2 0 0 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 0 14 1 1720.8744 J3QRS9;X6R4W8;O43670;J3KS31 J3QRS9 379 392 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 3;4 0.00010248 70.68 By MS/MS By MS/MS 2 1 0.85611 0.79834 14.141 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83253 0.89919 16.824 2 0 Median 0.85611 0.78768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27140000 13183000 13957000 0 0 0 0 0 0 24241000 11632000 12609000 2898900 1551500 1347400 0 0 0 0 0 0 20451 1353 21326 107083;107084;107085 108531;108532;108533;108534 108533 4 LIHPTENITFHAVSSVVNNSR KWLDFGEVSTQEALKLIHPTENITFHAVSS NITFHAVSSVVNNSRNNTPECLAPVDLVVK K L I S R N 1 1 3 0 0 0 1 0 2 2 1 0 0 1 1 3 2 0 0 3 0 0 21 0 2334.208 D6R9T3;E7EMP6;Q96FZ2;D6RGK7 D6R9T3 192 212 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes no 3 1.0582E-06 44.729 By MS/MS 1 0.83405 0.90379 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83405 0.90379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4723000 2494600 2228400 0 0 0 0 0 0 4723000 2494600 2228400 0 0 0 0 0 0 0 0 0 20452 807 21327 107086 108535 108535 1 LIHQTNLILQTFK FKDGKAINVFVSANRLIHQTNLILQTFKTV NRLIHQTNLILQTFKTVA____________ R L I F K T 0 0 1 0 0 2 0 0 1 2 3 1 0 1 0 0 2 0 0 0 0 0 13 0 1567.9086 Q9BUL8;C9J363 Q9BUL8 197 209 PDCD10 Programmed cell death protein 10 yes no 2;3 1.7982E-06 118.28 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 2 2 1 1 1.2275 1.0621 31.325 10 Median 1.0796 1.0022 2.3267 2 0 Median 1.2136 1.0355 3.8676 2 0 Median 1.2306 1.1558 5.9041 2 0 Median 1.302 1.0746 1.9438 2 0 Median 2.749 2.8073 NaN 1 0 Median 1.2137 1.0202 NaN 1 0 Median 89866000 42083000 47783000 66174000 32158000 34016000 2223900 1005700 1218200 17104000 7357000 9746900 1678700 687590 991100 2422800 757340 1665500 263030 117760 145280 20453 3841 21328 107087;107088;107089;107090;107091;107092;107093;107094;107095;107096 108536;108537;108538;108539;108540;108541;108542;108543 108540 8 LIHTLDDR QHKQIVRNDIKLAAKLIHTLDDRTQLWASE DIKLAAKLIHTLDDRTQLWASEPGTPPLPT K L I D R T 0 1 0 2 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 981.52434 Q9BXP5;H7C3A1 Q9BXP5 527 534 SRRT Serrate RNA effector molecule homolog yes no 2 0.0055542 75.109 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.1109 0.94328 8.0141 7 Median NaN NaN NaN 0 0 Median 1.1191 0.95391 1.5954 2 0 Median 0.9327 1.0085 12.28 2 0 Median 1.062 0.90572 10.731 2 0 Median NaN NaN NaN 0 0 Median 1.1475 0.94328 NaN 1 1 Median 21010000 9927200 11083000 0 0 0 12272000 5774900 6497500 4447100 2309400 2137700 3670500 1552200 2118200 0 0 0 620340 290580 329770 20454 3879 21329 107097;107098;107099;107100;107101;107102;107103 108544;108545;108546;108547;108548;108549;108550;108551;108552 108548 9 LIHTLDDRTQLWASEPGTPPLPTSLPSQNPILK QHKQIVRNDIKLAAKLIHTLDDRTQLWASE PPLPTSLPSQNPILKNITDYLIEEVSAEEE K L I L K N 1 1 1 2 0 2 1 1 1 2 6 1 0 0 6 3 4 1 0 0 0 0 33 1 3634.9359 Q9BXP5;H7C3A1 Q9BXP5 527 559 SRRT Serrate RNA effector molecule homolog yes no 4 0.066073 14.159 By MS/MS 1 0.34249 0.38877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34249 0.38877 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3197300 2702300 494970 0 0 0 0 0 0 3197300 2702300 494970 0 0 0 0 0 0 0 0 0 20455 3879 21330 107104 108553 108553 1 LIIAGTSAYAR DYNQLALTARLFRPRLIIAGTSAYARLIDY FRPRLIIAGTSAYARLIDYARMREVCDEVK R L I A R L 3 1 0 0 0 0 0 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 0 1134.6397 P34897;H0YIZ0;G3V2Y4;G3V5L0 P34897 220 230 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 5.8939E-10 176.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 2 3 1.3471 1.1335 23.282 17 Median 1.1233 1.1175 8.4977 3 0 Median 1.3613 1.1415 38.421 3 0 Plateau 1.0234 1.0017 10.203 2 0 Median 1.3675 1.1742 23.343 4 0 Median 1.5083 1.5168 6.0815 2 0 Median 1.4528 1.2377 10.258 3 0 Plateau 443060000 197100000 245960000 149910000 70021000 79891000 40290000 17397000 22893000 91640000 45037000 46603000 115120000 47124000 67993000 14110000 4890700 9219200 31994000 12632000 19362000 20456 2228 21331 107105;107106;107107;107108;107109;107110;107111;107112;107113;107114;107115;107116;107117;107118;107119;107120;107121 108554;108555;108556;108557;108558;108559;108560;108561;108562;108563;108564;108565;108566;108567;108568;108569;108570;108571;108572;108573;108574;108575;108576;108577;108578 108555 25 LIIAGTSCYSR NYDQLEENARLFHPKLIIAGTSCYSRNLEY FHPKLIIAGTSCYSRNLEYARLRKIADENG K L I S R N 1 1 0 0 1 0 0 1 0 2 1 0 0 0 0 2 1 0 1 0 0 0 11 0 1239.6282 P34896 P34896 197 207 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 2 0.033498 30.254 By MS/MS 1 1.0942 0.95352 NaN 1 Median NaN NaN NaN 0 0 Median 1.0942 0.95352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1134400 514930 619470 0 0 0 1134400 514930 619470 0 0 0 0 0 0 0 0 0 0 0 0 20457 2227 21332 107122 108579 108579 1 LIIAMLER LQGYHPNDIEKEWGKLIIAMLEREKALRPE IEKEWGKLIIAMLEREKALRPEVERLEMLQ K L I E R E 1 1 0 0 0 0 1 0 0 2 2 0 1 0 0 0 0 0 0 0 0 0 8 0 957.56812 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9 E9PHM6 365 372 DST Dystonin no no 2 0.031031 38.792 By matching By matching By MS/MS 1 2 1 1.2407 1.2339 5.1629 4 Median 1.2008 1.2076 NaN 1 0 Median 1.3759 1.2085 8.1412 2 0 Median 1.1233 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2721900 1327800 1394100 1436800 653960 782820 402330 217600 184730 882770 456240 426520 0 0 0 0 0 0 0 0 0 20458 934 21333 107123;107124;107125;107126 108580 108580 1 LIIEEDTENENEK GYDRSRRKYWFLNRRLIIEEDTENENEKKI RRLIIEEDTENENEKKIWYYSTKVQLAELI R L I E K K 0 0 2 1 0 0 5 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 13 0 1574.7312 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 477 489 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 6.7811E-07 133.81 By MS/MS 1 0.8415 0.90106 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8415 0.90106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8460500 4062300 4398200 0 0 0 0 0 0 8460500 4062300 4398200 0 0 0 0 0 0 0 0 0 20459 2762 21334 107127 108581;108582 108581 2 LIIEEDTENENEKK GYDRSRRKYWFLNRRLIIEEDTENENEKKI RLIIEEDTENENEKKIWYYSTKVQLAELID R L I K K I 0 0 2 1 0 0 5 0 0 2 1 2 0 0 0 0 1 0 0 0 0 0 14 1 1702.8261 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 477 490 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 0.00024071 52.265 By MS/MS 3 0.97778 1.109 24.29 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97778 1.109 24.29 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14944000 7401800 7541900 0 0 0 0 0 0 14944000 7401800 7541900 0 0 0 0 0 0 0 0 0 20460 2762 21335 107128;107129;107130 108583;108584;108585;108586;108587;108588 108587 6 LIIEMLER PQGYHPNDVEEEWGKLIIEMLEREKSLRPA VEEEWGKLIIEMLEREKSLRPAVERLELLL K L I E R E 0 1 0 0 0 0 2 0 0 2 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1015.5736 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 403 410 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.031031 38.792 By MS/MS By matching By MS/MS By matching 2 2 1 3 1.0892 1.0041 20.593 8 Median 1.025 1.016 25.269 2 0 Median 1.3446 1.1628 21.307 2 0 Median 0.89453 1.008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0553 1.4723 28.708 3 0 Plateau 6869900 2863300 4006600 2971700 1236900 1734900 2094400 787330 1307100 1285300 646990 638350 0 0 0 0 0 0 518400 192120 326280 20461 1220 21336 107131;107132;107133;107134;107135;107136;107137;107138 108589;108590 108589 2 LIILDEIHLLHDDRGPVLEALVAR ITRKGGERTYTQLVRLIILDEIHLLHDDRG LHDDRGPVLEALVARAIRNIEMTQEDVRLI R L I A R A 2 2 0 3 0 0 2 1 2 3 6 0 0 0 1 0 0 0 0 2 0 0 24 1 2719.5385 O75643;A0A494C1A5 O75643 611 634 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 4 0.041785 10.838 By MS/MS 1 1.0084 1.0184 NaN 1 Median NaN NaN NaN 0 0 Median 1.0084 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1490800 577530 913240 0 0 0 1490800 577530 913240 0 0 0 0 0 0 0 0 0 0 0 0 20462 1688 21337 107139 108591 108591 1 LIILEHYSQASEWAAK ______________________________ IILEHYSQASEWAAKYIRNRIIQFNPGPEK K L I A K Y 3 0 0 0 0 1 2 0 1 2 2 1 0 0 0 2 0 1 1 0 0 0 16 0 1857.9625 P46926;D6RFF8;D6RAY7;D6R9P4;D6R917;D6RB13;D6RFK5 P46926 3 18 GNPDA1 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase yes no 3 0.02436 17.281 By MS/MS 1 1.2728 1.1916 NaN 1 Median 1.2728 1.1916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7380700 2602700 4778000 7380700 2602700 4778000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20463 2348 21338 107140 108592 108592 1 LIINSLYK SEKFAFQAEVNRMMKLIINSLYKNKEIFLR EVNRMMKLIINSLYKNKEIFLRELISNASD K L I Y K N 0 0 1 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 1 0 0 0 8 0 962.58007 P14625;Q96GW1;A0A1W2PRR1;F8W026 P14625 88 95 HSP90B1 Endoplasmin yes no 2 0.0029868 102.72 By MS/MS By matching By MS/MS By MS/MS By matching 7 2 1 2 1 1.2193 1.1538 32.774 13 Median 1.1506 1.052 8.6745 7 0 Median 1.3472 1.152 0.22362 2 0 Median 1.0811 1.1843 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5702 2.5629 14.342 2 0 Median 1.8009 1.5619 NaN 1 0 Median 207740000 94150000 113590000 191810000 87578000 104240000 2293900 953840 1340000 7879200 3646700 4232500 0 0 0 5559400 1908800 3650600 194720 63062 131660 20464 2006 21339 107141;107142;107143;107144;107145;107146;107147;107148;107149;107150;107151;107152;107153 108593;108594;108595;108596;108597;108598;108599;108600;108601 108593 9 LIIQAGIK CSMYVALFPCNECAKLIIQAGIKEVIFMSD PCNECAKLIIQAGIKEVIFMSDKYHDSDEA K L I I K E 1 0 0 0 0 1 0 1 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 854.55894 P32321;D6RBJ9 P32321 116 123 DCTD Deoxycytidylate deaminase yes no 2 0.0060114 73.039 By MS/MS By MS/MS 1 2 1.2744 1.203 9.1971 3 Plateau 1.2744 1.203 NaN 1 0 Median 1.2765 1.0877 10.079 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18572000 8268000 10304000 12096000 5368800 6727400 6475300 2899200 3576200 0 0 0 0 0 0 0 0 0 0 0 0 20465 2217 21340 107154;107155;107156 108602;108603;108604;108605 108602 4 LIISTPNQR GIGNKTEISVRGQDRLIISTPNQRNEKPTQ VRGQDRLIISTPNQRNEKPTQSVSSPEATS R L I Q R N 0 1 1 0 0 1 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 9 0 1040.5978 Q9BZ95;H0YE68 Q9BZ95 543 551 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes no 2 0.019782 55.676 By MS/MS 1 0.69852 0.74804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69852 0.74804 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1696400 923950 772460 0 0 0 0 0 0 1696400 923950 772460 0 0 0 0 0 0 0 0 0 20466 3896 21341 107157 108606 108606 1 LIITEETAK APVYKRVMPDGKIQKLIITEETAKIRPFAV DGKIQKLIITEETAKIRPFAVAAVLRNIKF K L I A K I 1 0 0 0 0 0 2 0 0 2 1 1 0 0 0 0 2 0 0 0 0 0 9 0 1016.5754 Q9NSD9 Q9NSD9 108 116 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS 1 1 1 1.2237 1.0981 5.8765 3 Median 1.165 1.0981 NaN 1 0 Median 1.2237 1.0255 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3532 1.1528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23156000 10308000 12849000 10041000 4605800 5434900 10281000 4431500 5849600 0 0 0 2834700 1270300 1564400 0 0 0 0 0 0 20467 4102 21342 107158;107159;107160 108607;108608;108609;108610;108611 108607 5 LIITQVR THIKGFTLNDAANSRLIITQVRRDYLKEAV LNDAANSRLIITQVRRDYLKEAVTTLKTVL R L I V R R 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 0 0 1 0 0 7 0 841.53854 P42704 P42704 1110 1116 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0023577 117.7 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 3 1 2 2 1.4227 1.3673 32.178 12 Median 1.0988 1.077 6.7136 2 0 Median 1.7832 1.5439 24.026 3 0 Plateau 1.0468 1.1695 29.504 2 1 Median 1.3812 1.1746 NaN 1 0 Median 2.2023 2.3318 28.251 2 0 Median 1.8869 1.5943 16.998 2 0 Median 48620000 20441000 28179000 20023000 9575200 10448000 6516200 2444700 4071500 12232000 5009700 7222100 3205700 1347400 1858300 3659200 1142200 2517000 2984100 921410 2062700 20468 2315 21343 107161;107162;107163;107164;107165;107166;107167;107168;107169;107170;107171;107172;107173 108612;108613;108614;108615;108616;108617;108618 108613 7 LIIVASQAMR PRCTMVEAFDRWGKKLIIVASQAMRYRALI RWGKKLIIVASQAMRYRALIGQEGDPDLKL K L I M R Y 2 1 0 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 0 1 0 0 10 0 1100.6376 Q12789 Q12789 149 158 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00037242 81.296 By MS/MS 1 0.96022 1.0524 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96022 1.0524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7596600 3709100 3887500 0 0 0 0 0 0 7596600 3709100 3887500 0 0 0 0 0 0 0 0 0 20469 2758 21344 107174 108619 108619 1 LIIVEGCQR YHTEIVFARTSPQQKLIIVEGCQRQGAIVA TSPQQKLIIVEGCQRQGAIVAVTGDGVNDS K L I Q R Q 0 1 0 0 1 1 1 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1086.5856 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1;Q13733;P54707 P05023 699 707 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2 yes no 2 0.00081745 96.253 By MS/MS 3 1.2043 1.0283 6.7568 3 Median NaN NaN NaN 0 0 Median 1.2043 1.0283 6.7568 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14710000 6619200 8091200 0 0 0 14710000 6619200 8091200 0 0 0 0 0 0 0 0 0 0 0 0 20470 1857 21345 107175;107176;107177 108620;108621;108622;108623;108624;108625 108620 6 LIIWDSYTTNK GTDSRLLVSASQDGKLIIWDSYTTNKVHAI QDGKLIIWDSYTTNKVHAIPLRSSWVMTCA K L I N K V 0 0 1 1 0 0 0 0 0 2 1 1 0 0 0 1 2 1 1 0 0 0 11 0 1352.6976 E7EP32;P62879;C9JIS1;C9JXA5;C9JZN1;P62873;F6UT28;B1AKQ8;F6X3N5 P62873 79 89 GNB2;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.00014249 101.11 By MS/MS By matching By MS/MS By MS/MS 5 3 1 1 1.2134 1.091 37.429 10 Median 1.1501 1.0563 44.859 5 0 Median 1.2613 1.1021 26.906 3 0 Median 1.5018 1.4472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3079 1.3324 NaN 1 0 Median NaN NaN NaN 0 0 Median 149860000 67176000 82686000 95154000 45172000 49983000 23693000 9946700 13747000 24561000 9561500 15000000 0 0 0 6453100 2496300 3956800 0 0 0 20471 2603;867 21346 107178;107179;107180;107181;107182;107183;107184;107185;107186;107187 108626;108627;108628;108629;108630;108631;108632;108633;108634;108635 108628 10 LIKDDFLQQNGYTPYDR ASLAETDKITLEVAKLIKDDFLQQNGYTPY KDDFLQQNGYTPYDRFCPFYKTVGMLSNMI K L I D R F 0 1 1 3 0 2 0 1 0 1 2 1 0 1 1 0 1 0 2 0 0 0 17 1 2085.0167 P38606 P38606 514 530 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 6.6651E-06 63.918 By MS/MS 1 0.94492 0.94676 NaN 1 Median 0.94492 0.94676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20534000 10879000 9654900 20534000 10879000 9654900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20472 2276 21347 107188 108636;108637 108636 2 LIKDGLIIR TNEIANANSRQQIRKLIKDGLIIRKPVTVH RQQIRKLIKDGLIIRKPVTVHSRARCRKNT K L I I R K 0 1 0 1 0 0 0 1 0 3 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1039.6754 J3QR09;J3KTE4;P84098 J3QR09 41 49 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.0060594 83.265 By matching By matching By MS/MS By matching 1 1 1 1 1.0689 1.0317 20.384 4 Median 0.96277 1.0073 NaN 1 0 Median 0.93798 0.87638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3451 1.4224 NaN 1 0 Median 1.1866 1.0566 NaN 1 0 Median 16158000 7889600 8268800 7870300 4079700 3790700 1928500 919170 1009300 0 0 0 0 0 0 4740200 2141700 2598500 1619400 749070 870340 20473 1335 21348 107189;107190;107191;107192 108638 108638 1 LIKEDQVEYHEGLK ______________________________ RLIKEDQVEYHEGLKSNFRDMVKELSDIIH R L I L K S 0 0 0 1 0 1 3 1 1 1 2 2 0 0 0 0 0 0 1 1 0 0 14 1 1699.8781 A0A0J9YXQ7;A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YXQ7 9 22 DOCK11 Dedicator of cytokinesis protein 11 yes no 4 0.0015204 37.55 By MS/MS 1 1.3524 1.5609 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3524 1.5609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4898200 1959300 2938900 0 0 0 0 0 0 4898200 1959300 2938900 0 0 0 0 0 0 0 0 0 20474 286 21349 107193 108639;108640 108640 2 LIKEELIR ANELAVQKAKAEITRLIKEELIRLQNSYQP AKAEITRLIKEELIRLQNSYQPTNKGRYKV R L I I R L 0 1 0 0 0 0 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1012.6281 Q7L014;A0A0C4DG89;H0Y9U3 Q7L014 1008 1015 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.011324 117.17 By MS/MS By MS/MS 1 1 1.0767 1.1699 3.8845 2 Median 1.0934 1.1382 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0603 1.2025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28596000 13730000 14867000 6286300 3021600 3264700 0 0 0 22310000 10708000 11602000 0 0 0 0 0 0 0 0 0 20475 3216 21350 107194;107195 108641;108642 108641 2 LIKEFSIYMTK GMFCFTGLKPEQVERLIKEFSIYMTKDGRI QVERLIKEFSIYMTKDGRISVAGVTSSNVG R L I T K D 0 0 0 0 0 0 1 0 0 2 1 2 1 1 0 1 1 0 1 0 0 0 11 1 1371.7472 P00505 P00505 394 404 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2;3 0.0019781 70.1 By MS/MS 2 1.2355 1.1529 1.8863 2 Median 1.2355 1.1529 1.8863 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10221000 4302100 5919100 10221000 4302100 5919100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20476 1823 21351 107196;107197 108643;108644;108645 108645 3 LIKEPAPDSGLLGLFQGQNSLLH LVGDAVHPQFKEIQKLIKEPAPDSGLLGLF SGLLGLFQGQNSLLH_______________ K L I L H - 1 0 1 1 0 2 1 3 1 1 6 1 0 1 2 2 0 0 0 0 0 0 23 1 2446.322 Q96AB3 Q96AB3 183 205 ISOC2 Isochorismatase domain-containing protein 2, mitochondrial yes yes 3 0.01152 19.398 By MS/MS By matching By matching 1 2 1 0.993 1.0057 40.622 4 Median 0.53856 0.50053 NaN 1 0 Median 1.1533 1.0057 22.243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0036 1.1909 NaN 1 0 Median NaN NaN NaN 0 0 Median 7147000 4548300 2598700 5999100 4037000 1962200 671790 293520 378270 0 0 0 0 0 0 476070 217760 258310 0 0 0 20477 3597 21352 107198;107199;107200;107201 108646 108646 1 LILAAKEAAVIDMKMHYEK L I E K 4 0 0 1 0 0 2 0 1 2 2 3 2 0 0 0 0 0 1 1 0 0 19 2 2173.1639 REV__H0YJ97 yes no 3 0.066658 8.9424 By MS/MS 1 5.3209 5.4561 NaN 1 Median 5.3209 5.4561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7412400 685650 6726800 7412400 685650 6726800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20478 4523 21353 107202 108647 108647 1 LILDLSMK ISTSPEEDSTWEFLRLILDLSMKVLKQDGK STWEFLRLILDLSMKVLKQDGKYFTQGNCV R L I M K V 0 0 0 1 0 0 0 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 8 0 931.54124 P52788 P52788 297 304 SMS Spermine synthase yes yes 2 0.0035841 87.323 By MS/MS By matching By MS/MS By matching By matching By matching 4 3 2 1 1 1 1.1591 1.0995 25.785 12 Median 1.2541 1.1566 16.19 4 0 Median 1.0045 0.84796 1.2003 3 0 Plateau 1.1591 1.2121 7.1464 2 0 Median 1.0934 0.91627 NaN 1 0 Median 2.0665 2.052 NaN 1 0 Median 1.2488 1.0659 NaN 1 0 Median 56867000 26596000 30271000 38571000 17640000 20931000 14688000 7343000 7344500 2528700 1100700 1428000 472290 230730 241560 513790 241190 272600 93699 40860 52839 20479 2459 21354;21355 107203;107204;107205;107206;107207;107208;107209;107210;107211;107212;107213;107214 108648;108649;108650;108651;108652;108653;108654 108651 1152 7 LILEEITR NNEVRTLDNLNPDVRLILEEITRFLNMEKL NLNPDVRLILEEITRFLNMEKLLPSYRHTI R L I T R F 0 1 0 0 0 0 2 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 8 0 985.5808 Q6P1X5;H0YB55 Q6P1X5 828 835 TAF2 Transcription initiation factor TFIID subunit 2 yes no 2 0.0034121 97.798 By matching By matching By MS/MS By matching 2 1 1 3 1.0679 0.98647 15.34 7 Median 0.83934 0.84997 8.1331 2 0 Median 1.0196 0.9214 NaN 1 0 Median 1.0679 1.1272 NaN 1 0 Median 1.3213 1.1468 11.184 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14487000 6895400 7591900 2789800 1432500 1357400 368780 137530 231260 10538000 4966600 5571200 790980 358800 432180 0 0 0 0 0 0 20480 3154 21356 107215;107216;107217;107218;107219;107220;107221 108655 108655 1 LILEPTQAAK ILTAPLSQRLCEELRLILEPTQAAKLKGDY CEELRLILEPTQAAKLKGDYRTGKRLNIRK R L I A K L 2 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1082.6336 Q9NU22 Q9NU22 5333 5342 MDN1 Midasin yes yes 2 0.00036476 82.279 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.94018 0.94862 30.591 4 Median NaN NaN NaN 0 0 Median 0.71089 0.61957 NaN 1 0 Median 0.93068 0.99245 NaN 1 0 Median 0.94977 0.90673 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5146 1.2981 NaN 1 0 Median 32442000 17137000 15306000 0 0 0 3480400 2053500 1426900 26056000 13812000 12244000 1450200 681780 768470 0 0 0 1455300 589380 865970 20481 4112 21357 107222;107223;107224;107225 108656;108657 108656 2 LILEQMQK ADPEVQQIMSDPAMRLILEQMQKDPQALSE MSDPAMRLILEQMQKDPQALSEHLKNPVIA R L I Q K D 0 0 0 0 0 2 1 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 1001.558 P31948;H0YGI8 P31948 506 513 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.0024312 135.35 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.2152 1.0523 24.907 8 Median 1.2924 1.1936 9.6858 3 0 Median 1.1713 0.96723 20.409 3 0 Plateau 1.336 1.3396 NaN 1 0 Median 1.1689 0.99148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 283960000 125510000 158450000 80889000 34027000 46862000 176390000 80437000 95950000 18291000 7342500 10949000 8391400 3706600 4684900 0 0 0 0 0 0 20482 2212 21358;21359 107226;107227;107228;107229;107230;107231;107232;107233 108658;108659;108660;108661;108662;108663;108664;108665 108661 956 8 LILEQMQKDPQALSEHLK ADPEVQQIMSDPAMRLILEQMQKDPQALSE EQMQKDPQALSEHLKNPVIAQKIQKLMDVG R L I L K N 1 0 0 1 0 3 2 0 1 1 4 2 1 0 1 1 0 0 0 0 0 0 18 1 2120.13 P31948 P31948 506 523 STIP1 Stress-induced-phosphoprotein 1 yes yes 3;4 2.9794E-06 55.864 By MS/MS By matching By matching 2 1 1 0.96094 0.90468 12.877 4 Median 1.0364 0.97355 2.0875 2 0 Median 0.90479 0.85318 NaN 1 0 Median 0.64968 0.74454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22792000 10695000 12097000 20458000 9455000 11003000 795650 418640 377000 1537700 821310 716420 0 0 0 0 0 0 0 0 0 20483 2212 21360 107234;107235;107236;107237 108666;108667;108668;108669 108667 4 LILEQMQKDPQALSEHLKNPVIAQK ADPEVQQIMSDPAMRLILEQMQKDPQALSE QALSEHLKNPVIAQKIQKLMDVGLIAIR__ R L I Q K I 2 0 1 1 0 4 2 0 1 2 4 3 1 0 2 1 0 0 0 1 0 0 25 2 2870.5688 P31948 P31948 506 530 STIP1 Stress-induced-phosphoprotein 1 yes yes 4;5 4.9663E-19 76.186 By MS/MS 2 0.82091 0.8377 0.78104 2 Median 0.82091 0.8377 0.78104 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66159000 32133000 34025000 66159000 32133000 34025000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20484 2212 21361 107238;107239 108670;108671;108672 108671 3 LILETVK PVTDYRDMKSDSVAKLILETVKEDSKERRR MKSDSVAKLILETVKEDSKERRRDSRAREK K L I V K E 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 7 0 814.51641 Q6UB99;A0A2R8Y438 Q6UB99 876 882 ANKRD11 Ankyrin repeat domain-containing protein 11 yes no 2 0.072289 35.105 By MS/MS By matching 1 3 1.2914 1.0526 14.079 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4957 1.2366 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2114 0.9775 11.404 3 0 Median 3203400 1398400 1805000 0 0 0 0 0 0 0 0 0 1364100 533880 830270 0 0 0 1839300 864490 974770 20485 3184 21362 107240;107241;107242;107243 108673 108673 1 LILEVHQFSR KEMIDKWEDRWEWLRLILEVHQFSRDASVA WEWLRLILEVHQFSRDASVAEAWLLGQEPY R L I S R D 0 1 0 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1240.6928 Q01082;A0A087WUZ3 Q01082 2015 2024 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 2.2942E-08 169.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 2 3 1.2575 1.0757 67.456 16 Median 1.361 1.2785 0.037363 2 0 Median 1.3999 1.1348 8.7901 3 1 Median 0.97169 1.0592 11.234 2 0 Median 1.2842 1.121 144.08 4 0 Median 0.9604 1.0038 4.1271 2 0 Median 1.2575 1.0394 5.8588 3 0 Median 148720000 70529000 78191000 22116000 10172000 11944000 33956000 13782000 20173000 73128000 37039000 36089000 5823000 2951600 2871400 11495000 5598400 5897100 2202400 986410 1216000 20486 2681 21363 107244;107245;107246;107247;107248;107249;107250;107251;107252;107253;107254;107255;107256;107257;107258;107259;107260 108674;108675;108676;108677;108678;108679;108680;108681;108682;108683;108684;108685;108686;108687;108688;108689;108690;108691 108681 18 LILEYVK IAQHSAIKMLHSRVKLILEYVKASEAGEVP KMLHSRVKLILEYVKASEAGEVPFNHEILR K L I V K A 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 7 0 876.53206 Q7L5N1;E7EM64 Q7L5N1 237 243 COPS6 COP9 signalosome complex subunit 6 yes no 2 0.014908 73.039 By MS/MS By matching By MS/MS By matching By matching 2 1 1 2 1 1.2997 1.1128 7.9602 7 Median 1.1125 1.0427 8.4971 2 0 Median 1.3681 1.1497 NaN 1 0 Median 1.3067 1.2528 NaN 1 0 Median 1.2972 1.1089 0.49329 2 0 Median NaN NaN NaN 0 0 Median 1.4664 1.2227 NaN 1 0 Median 32135000 14767000 17368000 18422000 8836200 9586000 7176300 3073400 4102800 5285000 2295700 2989300 738290 310440 427850 0 0 0 513240 251560 261690 20487 855 21364 107261;107262;107263;107264;107265;107266;107267 108692;108693;108694;108695 108692 4 LILGLMMPPAHYDAK LMTDLKSEISGDLARLILGLMMPPAHYDAK LILGLMMPPAHYDAKQLKKAMEGAGTDEKA R L I A K Q 2 0 0 1 0 0 0 1 1 1 3 1 2 0 2 0 0 0 1 0 0 0 15 0 1668.8732 E5RK69;P08133;E7EMC6 P08133 428 442 ANXA6 Annexin;Annexin A6 no no 3 0.028008 17.506 By MS/MS By matching By matching By matching 2 2 1 1 0.78022 0.7042 45.961 6 Median NaN NaN NaN 0 0 Median 0.53792 0.45471 52.109 2 0 Median 1.0171 1.0877 15.366 2 0 Median 0.7802 0.69473 NaN 1 0 Median 0.6802 0.71381 NaN 1 0 Median NaN NaN NaN 0 0 Median 14436000 7175000 7260700 0 0 0 9552400 4987600 4564900 4177900 1811800 2366100 133460 63176 70284 571930 312440 259490 0 0 0 20488 1898;854 21365 107268;107269;107270;107271;107272;107273 108696;108697 108696 2 LILIESR KHLERNRKDKDAKFRLILIESRIHRLARYY KDKDAKFRLILIESRIHRLARYYKTKRVLP R L I S R I 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 7 0 842.52255 P62277 P62277 115 121 RPS13 40S ribosomal protein S13 yes yes 2 0.00072673 138.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 4 3 1.2997 1.1157 13.706 16 Median 1.1821 1.0922 20.708 3 1 Median 1.2267 1.0141 12.748 3 0 Median 1.0469 1.032 2.397 2 0 Median 1.327 1.1056 NaN 1 0 Median 1.2997 1.3152 12.425 4 0 Median 1.5663 1.2204 4.8493 3 0 Median 558310000 252500000 305810000 227680000 104550000 123130000 241600000 108670000 132930000 26383000 12310000 14072000 16974000 7240700 9733500 14900000 6643500 8256900 30772000 13084000 17688000 20489 2580 21366 107274;107275;107276;107277;107278;107279;107280;107281;107282;107283;107284;107285;107286;107287;107288;107289 108698;108699;108700;108701;108702;108703;108704;108705;108706;108707;108708;108709;108710;108711;108712;108713;108714;108715;108716 108700 19 LILISTNGSFIR RTCEWTGLKFSNDGKLILISTNGSFIRLID DGKLILISTNGSFIRLIDAFKGVVMHTFGG K L I I R L 0 1 1 0 0 0 0 1 0 3 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1332.7765 Q6UXN9 Q6UXN9 208 219 WDR82 WD repeat-containing protein 82 yes yes 2 4.6895E-06 102.61 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0937 0.99292 8.1973 4 Median 1.0341 0.97973 NaN 1 0 Median 1.1566 0.9974 NaN 1 0 Median 1.015 0.98847 NaN 1 0 Median 1.3896 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19375000 9430700 9944100 4859100 2396700 2462400 363400 171070 192330 13098000 6401000 6696500 1054800 461920 592860 0 0 0 0 0 0 20490 3190 21367 107290;107291;107292;107293 108717;108718;108719;108720;108721;108722 108720 6 LILKNENVDR HINQPALKQREAILKLILKNENVDRHVDLL EAILKLILKNENVDRHVDLLEVAQETDGFS K L I D R H 0 1 2 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 1 1212.6826 Q8NBU5 Q8NBU5 271 280 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 3 0.020653 26.118 By MS/MS By matching 1 1 1.0298 1.0007 21.423 2 Median 0.80407 0.86005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.319 1.1644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1702000 717750 984230 1259700 513650 746060 0 0 0 0 0 0 442280 204100 238180 0 0 0 0 0 0 20491 3412 21368 107294;107295 108723;108724 108724 2 LILLHHEHPER AEMSKHPGLVLILGKLILLHHEHPERKRAP ILGKLILLHHEHPERKRAPQTYEKEEDEDK K L I E R K 0 1 0 0 0 0 2 0 3 1 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1392.7626 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;A0A1B0GTI6 A0A3F2YNW7 2061 2071 ARID1B AT-rich interactive domain-containing protein 1B yes no 3 0.00014487 67.726 By MS/MS By MS/MS 2 3 1.2083 1.058 27.752 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3459 1.4681 25.607 2 1 Median 1.2083 1.0322 13.215 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8030500 3292300 4738200 0 0 0 0 0 0 5100600 1862000 3238600 2929800 1430200 1499600 0 0 0 0 0 0 20492 449 21369 107296;107297;107298;107299;107300 108725;108726;108727;108728;108729;108730;108731 108731 7 LILLHHK FEMSKHPGLLLILGKLILLHHKHPERKQAP GLLLILGKLILLHHKHPERKQAPLTYEKEE K L I H K H 0 0 0 0 0 0 0 0 2 1 3 1 0 0 0 0 0 0 0 0 0 0 7 0 872.55961 O14497;H0Y488;A0A1B0GTU5 O14497 2014 2020 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.064634 36.587 By matching By MS/MS By matching 1 3 1 1.329 1.2041 28.563 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0363 1.1502 NaN 1 0 Median 1.4895 1.2663 10.381 3 0 Median NaN NaN NaN 0 0 Median 0.80319 0.69233 NaN 1 0 Median 3633700 1730700 1903100 0 0 0 0 0 0 1599500 827610 771840 1591300 659180 932140 0 0 0 442970 243870 199090 20493 1480 21370 107301;107302;107303;107304;107305 108732;108733;108734;108735 108732 4 LILLITQVTASEK SRVKTFQKLSHLHGKLILLITQVTASEKTK GKLILLITQVTASEKTKGATSPGQKAKLVY K L I E K T 1 0 0 0 0 1 1 0 0 2 3 1 0 0 0 1 2 0 0 1 0 0 13 0 1427.8599 Q15061 Q15061 572 584 WDR43 WD repeat-containing protein 43 yes yes 2 0.0036405 43.512 By MS/MS By matching 1 2 1.3665 1.3172 21.17 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2754 1.3172 NaN 1 0 Median 1.7124 1.4658 28.638 2 0 Median 2946300 1261900 1684400 0 0 0 0 0 0 0 0 0 0 0 0 2547600 1117500 1430100 398740 144410 254330 20494 2924 21371 107306;107307;107308 108736;108737 108737 2 LILPELGPVFK VLLIAEECTKEEYVKLILPELGPVFKQQEP EYVKLILPELGPVFKQQEPIQILLIFLQKM K L I F K Q 0 0 0 0 0 0 1 1 0 1 3 1 0 1 2 0 0 0 0 1 0 0 11 0 1224.7482 F8VSC5;A0A0U1RQQ9;Q6P3W7;H0YIK6 F8VSC5 408 418 SCYL2 SCY1-like protein 2 yes no 2 0.008153 41.029 By matching By matching By MS/MS By matching 2 1 1 1 0.7111 0.73851 12.876 5 Median 0.66266 0.67158 0.5535 2 0 Median 1.0371 0.91685 NaN 1 0 Median 0.7111 0.73851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88505 0.77755 NaN 1 0 Median 4204300 2342900 1861400 951450 502930 448520 2140400 1185300 955070 1045400 619230 426120 0 0 0 0 0 0 67167 35463 31704 20495 304 21372 107309;107310;107311;107312;107313 108738 108738 1 LILPHVDIQLK GDEMTRIIWQFIKEKLILPHVDIQLKYFDL IKEKLILPHVDIQLKYFDLGLPNRDQTDDQ K L I L K Y 0 0 0 1 0 1 0 0 1 2 3 1 0 0 1 0 0 0 0 1 0 0 11 0 1287.7915 P48735 P48735 70 80 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 0.0018537 56.729 By MS/MS By matching By matching 1 1 1 1.734 1.4776 27.718 3 Median NaN NaN NaN 0 0 Median 1.734 1.4776 NaN 1 0 Median 0.9612 0.96627 NaN 1 0 Median 1.8188 1.6267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19713000 7553900 12159000 0 0 0 13905000 5151400 8753600 2036500 1040400 996020 3771800 1362100 2409700 0 0 0 0 0 0 20496 2367 21373 107314;107315;107316 108739;108740 108740 2 LILPVGPAGGNQMLEQYDKLQDGSIK VVPQALIDQLKPGGRLILPVGPAGGNQMLE QMLEQYDKLQDGSIKMKPLMGVIYVPLTDK R L I I K M 1 0 1 2 0 3 1 4 0 2 4 2 1 0 2 1 0 0 1 1 0 0 26 1 2783.4528 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8 A0A0A0MRJ6 237 262 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 3 2.8382E-09 49.593 By MS/MS By matching By matching 1 1 1 0.85862 0.7868 30.792 3 Median 0.76368 0.77604 NaN 1 0 Median 0.85862 0.7868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.269 1.3318 NaN 1 0 Median NaN NaN NaN 0 0 Median 16695000 8694800 8000300 14379000 7617200 6761700 1357800 698480 659340 0 0 0 0 0 0 958370 379090 579290 0 0 0 20497 163 21374 107317;107318;107319 108741;108742 108742 76 2 LILQIGR APDSLQKIESLGYNRLILQIGRGTVVPEPF IESLGYNRLILQIGRGTVVPEPFSTESFTL R L I G R G 0 1 0 0 0 1 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 811.52797 A0A096LP10;A0A096LNJ4;A0A087WX43;D6RE84;A0A087WTT9;A0A1B0GVW6;Q9NP73;A0A096LNL2 A0A096LP10 32 38 ALG13 Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 yes no 2 0.016999 66.994 By MS/MS By MS/MS 1 1 1.2861 1.1524 3.917 2 Median 1.1804 1.121 NaN 1 0 Median 1.4012 1.1848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24011000 10550000 13461000 17762000 7943900 9817600 6249900 2606000 3643800 0 0 0 0 0 0 0 0 0 0 0 0 20498 142 21375 107320;107321 108743;108744 108743 2 LILREEFTSR SGKDSEAWVPDSEERLILREEFTSRMHQRF DSEERLILREEFTSRMHQRFLDGKDGDFDY R L I S R M 0 2 0 0 0 0 2 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 10 1 1262.6983 Q96F63;M0QXS4 Q96F63 279 288 CCDC97 Coiled-coil domain-containing protein 97 yes no 3 0.00092391 58.676 By MS/MS 1 0.86616 0.80793 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86616 0.80793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431800 1622300 1809500 0 0 0 0 0 0 0 0 0 3431800 1622300 1809500 0 0 0 0 0 0 20499 3647 21376 107322 108745 108745 1 LILSELR L I L R 0 1 0 0 0 0 1 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 7 0 842.52255 REV__A0A3B3IS57 yes no 2 0.0096554 88.734 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 4 2 1 1.3954 1.1669 32.535 15 Median 1.0692 1.021 26.963 2 1 Median 1.3299 1.1176 8.2279 6 1 Median 1.8438 1.8179 6.9342 4 0 Linear 1.3989 1.1669 0 2 0 Median 2.9858 3.0004 NaN 1 1 Median NaN NaN NaN 0 0 Median 148370000 60963000 87411000 69425000 29961000 39464000 32083000 14379000 17704000 22821000 8246200 14575000 13305000 5912200 7392300 10741000 2464200 8276900 0 0 0 + 20500 4514 21377 107323;107324;107325;107326;107327;107328;107329;107330;107331;107332;107333;107334;107335;107336;107337 108746;108747;108748;108749;108750;108751;108752;108753;108754;108755;108756 108747 11 LILSLDKDTYEETGLQGHPSQFSGR HIDEDNTVALLPNGKLILSLDKDTYEETGL EETGLQGHPSQFSGRKIMKFIVSIDLMELS K L I G R K 0 1 0 2 0 2 2 3 1 1 4 1 0 1 1 3 2 0 1 0 0 0 25 1 2790.3824 O75818;A0A087X1N3;X6RLL4 O75818 115 139 RPP40 Ribonuclease P protein subunit p40 yes no 4 6.7194E-10 60.464 By MS/MS 1 0.8263 0.9401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8263 0.9401 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8669500 5239900 3429600 0 0 0 0 0 0 8669500 5239900 3429600 0 0 0 0 0 0 0 0 0 20501 1696 21378 107338 108757 108757 1 LILSLEGGYNLR FAQLTHLLMGLAGGKLILSLEGGYNLRALA GGKLILSLEGGYNLRALAEGVSASLHTLLG K L I L R A 0 1 1 0 0 0 1 2 0 1 4 0 0 0 0 1 0 0 1 0 0 0 12 0 1346.7558 A0A2R8YDE6;Q9UBN7;A0A2R8YCS4 A0A2R8YDE6 323 334 HDAC6 Histone deacetylase 6 yes no 3 0.060456 22.885 By MS/MS 1 3.4375 2.9222 NaN 1 Median NaN NaN NaN 0 0 Median 3.4375 2.9222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1466600 286610 1180000 0 0 0 1466600 286610 1180000 0 0 0 0 0 0 0 0 0 0 0 0 20502 396 21379 107339 108758 108758 1 LILSPDMQAR ATTTAVPAPTPAPQRLILSPDMQARLPSGE PAPQRLILSPDMQARLPSGEVVSIGQLASL R L I A R L 1 1 0 1 0 1 0 0 0 1 2 0 1 0 1 1 0 0 0 0 0 0 10 0 1142.6118 Q6ZRS2;A0A0A0MS59;A0A087X0E3 Q6ZRS2 1169 1178 SRCAP Helicase SRCAP yes no 2 0.0022474 76.478 By MS/MS 1 1.3722 1.4454 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3722 1.4454 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13639000 6010000 7628600 0 0 0 0 0 0 13639000 6010000 7628600 0 0 0 0 0 0 0 0 0 20503 3199 21380 107340 108759 108759 1 LILTEASK IDVTVPLQCLVKDSKLILTEASKAGLPGFY CLVKDSKLILTEASKAGLPGFYDPCVGEEK K L I S K A 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 0 873.51713 Q9NVH1 Q9NVH1 501 508 DNAJC11 DnaJ homolog subfamily C member 11 yes yes 2 0.0059586 73.26 By matching By MS/MS 1 1 1.4329 1.2879 10.747 2 Median 1.2495 1.1937 NaN 1 0 Median 1.6432 1.3896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11536000 4684200 6852100 5595300 2382200 3213100 5940900 2302000 3638900 0 0 0 0 0 0 0 0 0 0 0 0 20504 4130 21381 107341;107342 108760;108761 108760 2 LILTGAESK DVFSSTHSLLHYFDRLILTGAESKSNGEEG LHYFDRLILTGAESKSNGEEGYGRSLRYAA R L I S K S 1 0 0 0 0 0 1 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 9 0 930.5386 F5H0F9;Q9UJX4;F5GY68;H0YFB5 F5H0F9 281 289 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.00091857 90.657 By MS/MS 1 0.88354 0.92466 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88354 0.92466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5747800 2724200 3023600 0 0 0 0 0 0 5747800 2724200 3023600 0 0 0 0 0 0 0 0 0 20505 1019 21382 107343 108762;108763 108763 2 LILYQEAAATNGR ISRECLNLLNGMTQKLILYQEAAATNGRVS QKLILYQEAAATNGRVSSSYPVEPKKLNSP K L I G R V 3 1 1 0 0 1 1 1 0 1 2 0 0 0 0 0 1 0 1 0 0 0 13 0 1418.7518 Q9BTX1 Q9BTX1 380 392 NDC1 Nucleoporin NDC1 yes yes 2 1.2371E-06 163.64 By MS/MS 1 0.99678 1.044 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99678 1.044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28511000 14143000 14369000 0 0 0 0 0 0 28511000 14143000 14369000 0 0 0 0 0 0 0 0 0 20506 3831 21383 107344 108764;108765 108765 2 LIMGIGHR IIPMEFVNKMKKEGKLIMGIGHRVKSINNP KMKKEGKLIMGIGHRVKSINNPDMRVQILK K L I H R V 0 1 0 0 0 0 0 2 1 2 1 0 1 0 0 0 0 0 0 0 0 0 8 0 895.50619 P53396 P53396 969 976 ACLY ATP-citrate synthase yes yes 2 0.0034959 92.692 By MS/MS By MS/MS 1 2 0.99601 0.82304 37.829 3 Median 1.3678 1.3171 NaN 1 0 Median 0.85984 0.71615 19.673 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57781000 28007000 29774000 15431000 7059400 8371800 42350000 20947000 21403000 0 0 0 0 0 0 0 0 0 0 0 0 20507 2467 21384;21385 107345;107346;107347 108766;108767;108768;108769 108768 1156 4 LIMNPSYYNLGDVSHDSVNK QDALDYITWTYFFRRLIMNPSYYNLGDVSH SYYNLGDVSHDSVNKFLSHLIEKSLIELEL R L I N K F 0 0 3 2 0 0 0 1 1 1 2 1 1 0 1 3 0 0 2 2 0 0 20 0 2265.0736 Q8N3C0 Q8N3C0 1763 1782 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.014528 24.594 By MS/MS 1 0.8962 0.97448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8962 0.97448 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2882700 1383700 1499000 0 0 0 0 0 0 2882700 1383700 1499000 0 0 0 0 0 0 0 0 0 20508 3366 21386 107348 108770 108770 1 LIMQYLK ______________________________ IESSDVIRLIMQYLKENSLHRALATLQEET R L I L K E 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 0 0 1 0 0 0 7 0 907.52011 Q2TAY7 Q2TAY7 13 19 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.01526 72.021 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 2 3 1.348 1.213 17.038 12 Median 1.7242 1.6503 NaN 1 0 Median 1.921 1.6396 NaN 1 0 Median 1.2353 1.1925 5.9322 2 0 Median 1.366 1.1774 0.51947 3 1 Median 1.0677 1.0688 28.387 2 1 Median 1.4927 1.2918 10.06 3 0 Median 86933000 37665000 49268000 3038300 1231200 1807100 3261200 1051200 2210000 39989000 17800000 22189000 27254000 11106000 16148000 8673300 4500000 4173300 4716500 1976200 2740200 20509 3005 21387;21388 107349;107350;107351;107352;107353;107354;107355;107356;107357;107358;107359;107360 108771;108772;108773;108774;108775;108776;108777;108778;108779 108773 1646 9 LINANMMVLGHEPR PIQSVKGKVVIDAFRLINANMMVLGHEPRQ RLINANMMVLGHEPRQTTSNLGHLNKPSIQ R L I P R Q 1 1 2 0 0 0 1 1 1 1 2 0 2 0 1 0 0 0 0 1 0 0 14 0 1593.812 O00487 O00487 162 175 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2;3 1.283E-07 112.15 By MS/MS By MS/MS By matching 4 1 2 0.94604 0.81329 31.554 7 Median 0.88276 0.82517 38.918 4 0 Median 0.97791 0.81329 NaN 1 0 Median 0.97547 0.9517 34.923 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119780000 65259000 54517000 105170000 57634000 47532000 10264000 5154600 5109000 4347300 2471000 1876300 0 0 0 0 0 0 0 0 0 20510 1468 21389;21390 107361;107362;107363;107364;107365;107366;107367 108780;108781;108782;108783;108784;108785 108781 470 6 LINAVELK GYEEARGDQCDKCGKLINAVELKKPQCKVC QCDKCGKLINAVELKKPQCKVCRSCPVVQS K L I L K K 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 P56192 P56192 424 431 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 0.0078694 65.252 By MS/MS 1 1.3255 1.283 NaN 1 Median 1.3255 1.283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11044000 5362800 5681700 11044000 5362800 5681700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20511 2508 21391 107368 108786 108786 1 LINESITELQK L I Q K 0 0 1 0 0 1 2 0 0 2 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1286.7082 REV__Q8IYT2 yes no 2 0.00074188 63.486 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 12 7 4 2 1.0495 0.93346 18.898 31 Median 1.3842 1.371 33.7 4 0 Linear 0.88661 0.80003 0 2 0 Median 1.126 1.147 7.9355 12 0 Median 0.96015 0.84476 8.105 7 0 Median 0.81415 0.81654 3.26 4 0 Median 1.0363 0.86887 10.141 2 0 Median 3647800000 1769700000 1878000000 290780000 128730000 162050000 594390000 315240000 279160000 1959100000 910890000 1048300000 470370000 237980000 232380000 314100000 168000000 146100000 18976000 8905300 10071000 + 20512 4511 21392 107369;107370;107371;107372;107373;107374;107375;107376;107377;107378;107379;107380;107381;107382;107383;107384;107385;107386;107387;107388;107389;107390;107391;107392;107393;107394;107395;107396;107397;107398;107399 108787;108788;108789;108790;108791;108792;108793;108794;108795;108796;108797;108798;108799;108800;108801;108802;108803;108804;108805;108806;108807;108808;108809;108810;108811;108812;108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823 108819 37 LINEWSRPIFGLTSNYK KHPKESRSNKDMAGKLINEWSRPIFGLTSN NEWSRPIFGLTSNYKGMTREEREQRDLEQM K L I Y K G 0 1 2 0 0 0 1 1 0 2 2 1 0 1 1 2 1 1 1 0 0 0 17 1 2037.0684 Q96ST2;A0A1B0GW95 Q96ST2 681 697 IWS1 Protein IWS1 homolog yes no 3 0.026163 16.88 By MS/MS By MS/MS 1 1 0.79743 0.85508 3.4797 2 Median 0.84578 0.87638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75185 0.8343 NaN 1 0 Median NaN NaN NaN 0 0 Median 3519800 1895800 1624000 1840100 1045100 795020 0 0 0 0 0 0 0 0 0 1679700 850660 829020 0 0 0 20513 3736 21393 107400;107401 108824;108825 108824 2 LINEYKEDPK KIKPLGPMLLNGLTKLINEYKEDPKLLSMA NGLTKLINEYKEDPKLLSMAYSAVGKLSSR K L I P K L 0 0 1 1 0 0 2 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 10 1 1247.6398 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 405 414 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.063708 40.002 By MS/MS 1 0.96898 0.94626 NaN 1 Median NaN NaN NaN 0 0 Median 0.96898 0.94626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 821890 384520 437370 0 0 0 821890 384520 437370 0 0 0 0 0 0 0 0 0 0 0 0 20514 3116 21394 107402 108826 108826 1 LINKPMVGPEAGGTK TQSNDGKEVVEVGQKLINKPMVGPEAGGTK LINKPMVGPEAGGTKEVPIKEIVEMNEIEE K L I T K E 1 0 1 0 0 0 1 3 0 1 1 2 1 0 2 0 1 0 0 1 0 0 15 1 1510.8177 Q9H2G2 Q9H2G2 584 598 SLK STE20-like serine/threonine-protein kinase yes yes 2;3 0.00011067 62.055 By MS/MS By MS/MS By matching 2 3 1 0.933 0.8822 20.861 6 Median 0.90003 0.88308 36.11 2 0 Median 0.85854 0.82383 20.294 3 0 Median NaN NaN NaN 0 0 Median 1.0139 0.9447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27939000 15487000 12452000 13662000 8093000 5569000 13624000 7173700 6450500 0 0 0 652850 220750 432100 0 0 0 0 0 0 20515 3942 21395 107403;107404;107405;107406;107407;107408 108827;108828;108829;108830;108831;108832 108829 6 LINLVGESLR TDYNNNHEGREEDQRLINLVGESLRLLGNT EEDQRLINLVGESLRLLGNTFVALSDLRCN R L I L R L 0 1 1 0 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1112.6554 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2 P46379 322 331 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.00035294 124.23 By MS/MS By MS/MS By MS/MS By matching 3 3 2 3 1.1423 1.0203 24.84 11 Median 1.1423 1.1001 10.253 3 0 Plateau 1.1656 0.9713 36.888 3 0 Median 1.3235 1.3623 32.984 2 0 Median 1.1949 1.0203 11.289 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39306000 17446000 21860000 16989000 7471300 9517900 16541000 7624700 8916200 4645900 1848300 2797700 1129700 501800 627860 0 0 0 0 0 0 20516 8 21396 107409;107410;107411;107412;107413;107414;107415;107416;107417;107418;107419 108833;108834;108835;108836;108837;108838 108833 6 LINNAIKNDLASR LFISVLVNSNSELIRLINNAIKNDLASRNP IRLINNAIKNDLASRNPTFMCLALHCIANV R L I S R N 2 1 3 1 0 0 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 13 1 1440.8049 O94973;A0A0G2JS82;A0A0G2JQM1;E9PR62;A0A0G2JQA4;A0A0G2JRF9;H0YDE9;H0YEG0;A0A0G2JQT9;A0A0G2JS17;E9PQP4;E9PPZ3;E9PPY8;E9PS94;O95782 O95782 111 123 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2;3 0.00020335 93.258 By MS/MS By matching 3 1 1.0675 1.1107 17.516 4 Median 1.0562 1.099 15.994 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1522 1.2793 NaN 1 0 Median NaN NaN NaN 0 0 Median 15458000 7324200 8134100 14069000 6439400 7629900 0 0 0 0 0 0 0 0 0 1389100 884820 504260 0 0 0 20517 1793;1741 21397 107420;107421;107422;107423 108839;108840;108841 108839 3 LINNNPEIFGPLK FAEFQEHEHALKALRLINNNPEIFGPLKRP LRLINNNPEIFGPLKRPIVEFSLEDRRKLK R L I L K R 0 0 3 0 0 0 1 1 0 2 2 1 0 1 2 0 0 0 0 0 0 0 13 0 1467.8086 Q9NW13 Q9NW13 559 571 RBM28 RNA-binding protein 28 yes yes 2 8.0804E-06 96.89 By MS/MS By MS/MS By matching 1 3 3 0.76951 0.71485 6.3631 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71446 0.75656 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76951 0.71485 7.2911 3 0 Plateau 0.81156 0.67688 5.9788 3 0 Median 20745000 11009000 9735600 0 0 0 0 0 0 1872000 1122400 749660 0 0 0 17881000 9356200 8524900 991760 530630 461130 20518 4145 21398 107424;107425;107426;107427;107428;107429;107430 108842;108843;108844;108845 108844 4 LINRPIIVFR ASVETAGDSELFLMKLINRPIIVFRGEHGF LFLMKLINRPIIVFRGEHGFIGCRKVTGTL K L I F R G 0 2 1 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 0 1 0 0 10 1 1239.7816 Q16658;C9JFC0;A0A0A0MSB2;C9JPH9 Q16658 380 389 FSCN1 Fascin yes no 2;3 0.00011546 124.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 6 3 2 1 1.0204 1.0036 13.764 21 Median 0.96302 0.97251 9.9724 9 2 Median 1.086 0.99313 20.731 6 0 Median 0.97687 1.0551 5.8152 3 0 Median 1.0501 0.97284 17.03 2 0 Median 1.0287 1.0898 NaN 1 0 Median NaN NaN NaN 0 0 Median 187300000 93135000 94163000 152040000 76449000 75588000 6177900 2844800 3333000 26317000 12547000 13770000 1836300 887880 948390 929290 406220 523060 0 0 0 20519 2993 21399 107431;107432;107433;107434;107435;107436;107437;107438;107439;107440;107441;107442;107443;107444;107445;107446;107447;107448;107449;107450;107451 108846;108847;108848;108849;108850;108851;108852;108853;108854;108855;108856;108857;108858;108859 108849 14 LIPDDVMTR TEIGVLAKAFIDQGKLIPDDVMTRLALHEL FIDQGKLIPDDVMTRLALHELKNLTQYSWL K L I T R L 0 1 0 2 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 1 0 0 9 0 1058.543 Q9UIJ7 Q9UIJ7 65 73 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.0091518 49.418 By MS/MS 1 0.9759 0.8252 NaN 1 Median NaN NaN NaN 0 0 Median 0.9759 0.8252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5969100 3050200 2918900 0 0 0 5969100 3050200 2918900 0 0 0 0 0 0 0 0 0 0 0 0 20520 4291 21400 107452 108860 108860 1 LIPDFPVAR SRESYDAPPTPSGARLIPDFPVARSSSPGR TPSGARLIPDFPVARSSSPGRKGSGKRPAA R L I A R S 1 1 0 1 0 0 0 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 9 0 1026.5862 Q96S55 Q96S55 122 130 WRNIP1 ATPase WRNIP1 yes yes 2 0.04318 32.841 By MS/MS By matching By matching 1 1 1 0.78703 0.76419 34.11 3 Median 0.78703 0.76419 NaN 1 0 Median 0.49994 0.45529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9023 0.86647 NaN 1 0 Median NaN NaN NaN 0 0 Median 5700100 3217200 2482900 3357400 1986200 1371200 735550 436640 298910 0 0 0 0 0 0 1607200 794410 812770 0 0 0 20521 3730 21401 107453;107454;107455 108861 108861 1 LIPDSIGKDIEK TREVQTNDLKEVVNKLIPDSIGKDIEKACQ VNKLIPDSIGKDIEKACQSIYPLHDVFVRK K L I E K A 0 0 0 2 0 0 1 1 0 3 1 2 0 0 1 1 0 0 0 0 0 0 12 1 1326.7395 P61247;D6RG13;H0Y9Y4;D6RAT0;D6RB09;D6R9B6 P61247 188 199 RPS3A 40S ribosomal protein S3a yes no 2;3 2.1534E-05 103.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 4 2 1.1383 1.0098 15.831 13 Median 0.89102 0.86153 8.1561 2 0 Median 0.95742 0.86158 NaN 1 0 Median 0.93893 0.98085 3.3508 2 0 Median 1.1548 1.014 0.57971 2 0 Median 1.1739 1.2473 5.3938 4 0 Median 1.2533 1.0758 13.599 2 0 Median 181370000 88631000 92742000 74893000 39244000 35649000 36998000 17281000 19716000 20649000 10438000 10210000 12012000 5308000 6704200 30916000 13870000 17047000 5905000 2490000 3415000 20522 2553 21402 107456;107457;107458;107459;107460;107461;107462;107463;107464;107465;107466;107467;107468 108862;108863;108864;108865;108866;108867;108868;108869;108870;108871;108872;108873 108862 12 LIPFLEK IESWFMDKNDNELLKLIPFLEKLVELNEDV KNDNELLKLIPFLEKLVELNEDVRPHIRDR K L I E K L 0 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 7 0 858.52149 Q05D32 Q05D32 435 441 CTDSPL2 CTD small phosphatase-like protein 2 yes yes 2 0.034572 47.743 By matching By matching By MS/MS By matching 1 2 5 1 0.7892 0.79055 23.252 9 Median 0.96503 0.97125 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9277 0.94764 25.632 2 0 Median NaN NaN NaN 0 0 Median 0.6603 0.65542 16.046 5 0 Median 0.9624 0.82689 NaN 1 0 Median 9378400 5300300 4078100 1538900 851480 687440 0 0 0 1954900 925300 1029600 0 0 0 5723700 3442600 2281100 160860 80942 79913 20523 2720 21403 107469;107470;107471;107472;107473;107474;107475;107476;107477 108874 108874 1 LIPGPLSPVAR PTGPLPPSKEPLKEKLIPGPLSPVARGGSN LKEKLIPGPLSPVARGGSNGGSNVGMEDGE K L I A R G 1 1 0 0 0 0 0 1 0 1 2 0 0 0 3 1 0 0 0 1 0 0 11 0 1118.6812 P48634 P48634 1213 1223 PRRC2A Protein PRRC2A yes yes 2 0.0058304 45.368 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.71464 0.65334 6.9237 5 Median 0.75152 0.70659 NaN 1 0 Median 0.7479 0.64535 4.016 2 0 Median 0.58872 0.65334 NaN 1 0 Median 0.66945 0.58632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16951000 9631000 7320300 9201200 5298400 3902800 4110100 2176800 1933300 3127500 1870700 1256800 512590 285140 227450 0 0 0 0 0 0 20524 2363 21404 107478;107479;107480;107481;107482 108875;108876;108877 108877 3 LIPLLLSSLNDEVPEVR GWLLCLRDRYSFFHKLIPLLLSSLNDEVPE PLLLSSLNDEVPEVRQLAASLWEDVGLQWQ K L I V R Q 0 1 1 1 0 0 2 0 0 1 5 0 0 0 2 2 0 0 0 2 0 0 17 0 1906.0775 Q86Y56;H0Y650;H7C3B1 Q86Y56 286 302 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 1.9988E-05 76.522 By MS/MS By MS/MS By matching 1 2 1 0.86528 0.79987 18.229 4 Median 0.63953 0.63405 NaN 1 0 Median 0.91047 0.79987 14.701 2 1 Median 0.91595 0.93816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4711400 2315100 2396300 1536500 896380 640140 3035400 1344500 1691000 139430 74209 65225 0 0 0 0 0 0 0 0 0 20525 3305 21405 107483;107484;107485;107486 108878;108879;108880;108881 108879 4 LIPLVLGLQEQLR ISQPDAQRYVNTLLKLIPLVLGLQEQLRQA LKLIPLVLGLQEQLRQAVQNGDMETSHGIC K L I L R Q 0 1 0 0 0 2 1 1 0 1 5 0 0 0 1 0 0 0 0 1 0 0 13 0 1490.9184 O94829 O94829 282 294 IPO13 Importin-13 yes yes 2 0.013272 51.092 By MS/MS 1 1.3365 1.1554 NaN 1 Median NaN NaN NaN 0 0 Median 1.3365 1.1554 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6482900 2609400 3873400 0 0 0 6482900 2609400 3873400 0 0 0 0 0 0 0 0 0 0 0 0 20526 1729 21406 107487 108882 108882 1 LIPNATGTGTFSPGASPGSEAR ______________________________ TGTFSPGASPGSEARTTGDISVEKLNLGTD R L I A R T 3 1 1 0 0 0 1 4 0 1 1 0 0 1 3 3 3 0 0 0 0 0 22 0 2087.0283 K7EN76;Q16512 K7EN76 8 29 PKN1 Serine/threonine-protein kinase N1 yes no 2 0.0024445 26.729 By MS/MS 1 0.49681 0.48286 NaN 1 Median 0.49681 0.48286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3310700 2030200 1280400 3310700 2030200 1280400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20527 1384 21407 107488 108883 108883 1 LIPPQDILR FGKESEVLIGNLGDKLIPPQDILRDVSDLK GNLGDKLIPPQDILRDVSDLKALANMHESL K L I L R D 0 1 0 1 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 9 0 1063.639 Q96A65 Q96A65 694 702 EXOC4 Exocyst complex component 4 yes yes 2 0.028308 50.607 By MS/MS 1 0.38555 0.40958 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38555 0.40958 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9419400 6921900 2497500 0 0 0 0 0 0 9419400 6921900 2497500 0 0 0 0 0 0 0 0 0 20528 3595 21408 107489 108884 108884 1 LIPPQPTGR GPMANAAAPTSTPQKLIPPQPTGRPSPAPP TSTPQKLIPPQPTGRPSPAPPAVPPAASPV K L I G R P 0 1 0 0 0 1 0 1 0 1 1 0 0 0 3 0 1 0 0 0 0 0 9 0 977.56581 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8YGP5 P51532 302 310 SMARCA4 Transcription activator BRG1 yes no 2 0.06063 28.174 By MS/MS 1 0.76781 0.67741 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76781 0.67741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 987890 515940 471960 0 0 0 0 0 0 0 0 0 987890 515940 471960 0 0 0 0 0 0 20529 366 21409 107490 108885 108885 1 LIPVHQVR THSKVLYVYDMLAGKLIPVHQVRGLKEKIV YDMLAGKLIPVHQVRGLKEKIVRSFEVSPD K L I V R G 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 2 0 0 8 0 960.58688 Q9Y5J1;J3KSR7 Q9Y5J1 330 337 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.0093648 60.961 By MS/MS 3 0.83408 0.8355 2.9097 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83408 0.8355 2.9097 3 0 Plateau NaN NaN NaN 0 0 Median 12671000 6496700 6174400 0 0 0 0 0 0 0 0 0 0 0 0 12671000 6496700 6174400 0 0 0 20530 4458 21410 107491;107492;107493 108886;108887 108887 2 LIPVLVNGMK EQPICKDVLVRHLPKLIPVLVNGMKYSDID RHLPKLIPVLVNGMKYSDIDIILLKGDVEE K L I M K Y 0 0 1 0 0 0 0 1 0 1 2 1 1 0 1 0 0 0 0 2 0 0 10 0 1082.6522 Q92973 Q92973 308 317 TNPO1 Transportin-1 yes yes 2 0.0016668 63.48 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 2 1.036 1.0347 12.723 7 Median 1.0287 0.99086 13.107 2 0 Median 1.2012 1.055 NaN 1 0 Median 0.96478 1.0347 NaN 1 1 Median 1.0356 0.92103 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2601 1.0483 25.587 2 0 Median 14850000 7835100 7015300 8614900 4628000 3986900 3348800 1706900 1641900 2277200 1204500 1072800 186630 96197 90428 0 0 0 422810 199520 223290 20531 3570 21411 107494;107495;107496;107497;107498;107499;107500;107501 108888;108889;108890;108891 108888 4 LIPVPMVGFK IIWEQAKVDNPDSEKLIPVPMVGFKELLRR PDSEKLIPVPMVGFKELLRRLKVQDQMTKQ K L I F K E 0 0 0 0 0 0 0 1 0 1 1 1 1 1 2 0 0 0 0 2 0 0 10 0 1099.6464 Q7Z3B4 Q7Z3B4 322 331 NUP54 Nucleoporin p54 yes yes 2 0.030163 34.089 By MS/MS 1 0.75938 0.73794 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75938 0.73794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11507000 6782800 4724700 0 0 0 0 0 0 11507000 6782800 4724700 0 0 0 0 0 0 0 0 0 20532 3239 21412 107502 108892 108892 1 LIQAAYDVLSDPQER DKNLDNAAEAAEQFKLIQAAYDVLSDPQER LIQAAYDVLSDPQERAWYDNHREALLKGGF K L I E R A 2 1 0 2 0 2 1 0 0 1 2 0 0 0 1 1 0 0 1 1 0 0 15 0 1716.8683 Q5F1R6 Q5F1R6 48 62 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.00034863 56.359 By MS/MS By matching 1 1 0.72975 0.67106 15.852 2 Median 0.60239 0.59991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88404 0.75066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3241500 1794800 1446800 2861900 1594700 1267200 0 0 0 0 0 0 379660 200070 179590 0 0 0 0 0 0 20533 3046 21413 107503;107504 108893 108893 1 LIQDQQEQIQHLK HKLDTVSSKIELNRKLIQDQQEQIQHLKST RKLIQDQQEQIQHLKSTTNELKSEKLQIST K L I L K S 0 0 0 1 0 5 1 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1619.8631 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 852 864 RAD50 DNA repair protein RAD50 yes no 2;3 1.9121E-07 166.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 1.0971 0.97491 22.69 11 Median 0.9466 0.91416 2.9741 2 0 Median NaN NaN NaN 0 0 Median 0.833 0.88535 13.627 2 0 Median 1.2526 1.1192 26.972 3 0 Median 1.3045 1.3663 3.4104 2 0 Median 1.095 0.91991 2.4641 2 0 Median 186260000 91376000 94886000 27994000 14121000 13873000 0 0 0 95856000 50335000 45522000 35169000 15249000 19920000 17855000 7107500 10748000 9387000 4563400 4823600 20534 3561 21414 107505;107506;107507;107508;107509;107510;107511;107512;107513;107514;107515;107516 108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906;108907;108908 108905 15 LIQEEKENTEQR MMLQEQLDAINKEIRLIQEEKENTEQRAEE EIRLIQEEKENTEQRAEEIESRVGSGSLDN R L I Q R A 0 1 1 0 0 2 4 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 12 1 1515.7529 A0A2R8Y7R9;Q13136;H0YDW2 A0A2R8Y7R9 627 638 PPFIA1 Liprin-alpha-1 yes no 2;3 0.00036975 93.111 By MS/MS 2 1.022 0.96964 4.525 2 Median NaN NaN NaN 0 0 Median 1.022 0.96964 4.525 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4077700 2019700 2058000 0 0 0 4077700 2019700 2058000 0 0 0 0 0 0 0 0 0 0 0 0 20535 382 21415 107517;107518 108909;108910;108911 108909 3 LIQELAK CVCIAEFLSLYETERLIQELAKCKIDTHNI LSLYETERLIQELAKCKIDTHNIIVNQLVF R L I A K C 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 O43681;A0A087WXS7 O43681 261 267 ASNA1 ATPase ASNA1 yes no 2 0.016244 69.176 By MS/MS By MS/MS 1 1 1.2018 1.0748 3.0857 2 Median 1.1763 1.0985 NaN 1 0 Median 1.2278 1.0516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8714500 4001800 4712700 3994300 1791700 2202500 4720200 2210100 2510100 0 0 0 0 0 0 0 0 0 0 0 0 20536 70 21416 107519;107520 108912;108913 108913 2 LIQEQHPEEELIK AHEERVNEVNQFAAKLIQEQHPEEELIKTK AKLIQEQHPEEELIKTKQDEVNAAWQRLKG K L I I K T 0 0 0 0 0 2 4 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 13 0 1604.841 A0A0D9SF54;Q13813 Q13813 215 227 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 7.9352E-53 200.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 6 6 3 3 0.94596 0.86621 27.154 29 Median 1.2001 1.2043 21.351 5 2 Median 1.0212 0.91321 18.675 6 1 Median 0.74456 0.81818 38.958 6 1 Median 0.93548 0.83052 5.3374 6 1 Median 0.90627 0.94991 11.63 3 0 Median 0.97419 0.80077 7.7659 3 0 Plateau 1131000000 574750000 556260000 124110000 57424000 66683000 331680000 149450000 182230000 513030000 285070000 227960000 91400000 46078000 45322000 60933000 31988000 28946000 9861400 4744600 5116800 20537 264;2838 21417 107521;107522;107523;107524;107525;107526;107527;107528;107529;107530;107531;107532;107533;107534;107535;107536;107537;107538;107539;107540;107541;107542;107543;107544;107545;107546;107547;107548;107549 108914;108915;108916;108917;108918;108919;108920;108921;108922;108923;108924;108925;108926;108927;108928;108929;108930;108931;108932;108933;108934;108935;108936;108937;108938;108939;108940;108941;108942;108943;108944;108945;108946;108947;108948;108949;108950;108951 108936 38 LIQESDQHLK TLLKETKFITYRSKKLIQESDQHLKDVEKI YRSKKLIQESDQHLKDVEKILQNDKRYLVL K L I L K D 0 0 0 1 0 2 1 0 1 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1209.6354 O14776 O14776 1036 1045 TCERG1 Transcription elongation regulator 1 yes yes 2 0.0022391 60.973 By MS/MS By matching By MS/MS 1 1 2 1.0215 0.95345 11.143 4 Median NaN NaN NaN 0 0 Median 1.2961 1.1089 NaN 1 0 Median 0.91694 0.97688 NaN 1 0 Median 1.0215 0.88867 6.5163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3642400 1687300 1955200 0 0 0 1156200 513430 642770 956120 489560 466550 1530100 684280 845820 0 0 0 0 0 0 20538 1494 21418 107550;107551;107552;107553 108952;108953;108954 108954 3 LIQESDQHLKDVEK TLLKETKFITYRSKKLIQESDQHLKDVEKI KLIQESDQHLKDVEKILQNDKRYLVLDCVP K L I E K I 0 0 0 2 0 2 2 0 1 1 2 2 0 0 0 1 0 0 0 1 0 0 14 1 1680.8683 O14776 O14776 1036 1049 TCERG1 Transcription elongation regulator 1 yes yes 2;3;4 6.003E-07 150.94 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 1 0.94741 1.026 23.288 8 Median 1.0098 1.0699 NaN 1 0 Median 1.2558 1.1753 NaN 1 0 Median 0.87185 0.99924 6.578 3 0 Median 1.203 1.146 17.02 2 0 Median NaN NaN NaN 0 0 Median 0.65489 0.59253 NaN 1 0 Median 45460000 21868000 23592000 1200800 803130 397720 1880000 653330 1226700 35922000 17346000 18576000 5458500 2562100 2896400 0 0 0 998820 503640 495180 20539 1494 21419 107554;107555;107556;107557;107558;107559;107560;107561 108955;108956;108957;108958;108959;108960;108961;108962 108957 8 LIQESPTLSK QMEFLIVIVERQAARLIQESPTLSKLAAIT RQAARLIQESPTLSKLAAITVLQPFYYLVQ R L I S K L 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 10 0 1114.6234 Q6P1A2 Q6P1A2 400 409 LPCAT3 Lysophospholipid acyltransferase 5 yes yes 2 0.00039551 78.334 By MS/MS 1 0.75591 0.74899 NaN 1 Median 0.75591 0.74899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2649800 1479200 1170600 2649800 1479200 1170600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20540 3149 21420 107562 108963 108963 1 LIQEWNSVDLR GRVNPREGIVLHSTKLIQEWNSVDLRTPLS HSTKLIQEWNSVDLRTPLSDTLHLPVWVDN K L I L R T 0 1 1 1 0 1 1 0 0 1 2 0 0 0 0 1 0 1 0 1 0 0 11 0 1371.7147 Q9Y223 Q9Y223 491 501 GNE Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase;UDP-N-acetylglucosamine 2-epimerase (hydrolyzing);N-acetylmannosamine kinase yes yes 2 0.024935 53.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20541 4366 21421 107563 108964 108964 1 LIQHANVQAHSSLIR YILLRNGVSEENLAKLIQHANVQAHSSLIR LIQHANVQAHSSLIRNLEQLGGTVTNPGPH K L I I R N 2 1 1 0 0 2 0 0 2 2 2 0 0 0 0 2 0 0 0 1 0 0 15 0 1685.9325 M0R376;M0R1A1;Q15833 M0R376 67 81 STXBP2 Syntaxin-binding protein 2 yes no 3;4 0.00022012 45.864 By MS/MS 2 0.9937 0.97182 12.438 2 Median 0.9937 0.97182 12.438 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9212900 4710000 4502900 9212900 4710000 4502900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20542 1432 21422 107564;107565 108965;108966 108965 1 LIQIPQLPENPPNFLR KDLFYRSSNLQYFKRLIQIPQLPENPPNFL IQIPQLPENPPNFLRASALSEHISPVVVIP R L I L R A 0 1 2 0 0 2 1 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 16 0 1888.0571 O00291 O00291 285 300 HIP1 Huntingtin-interacting protein 1 yes yes 2 0.0047216 33.886 By MS/MS 2 0.33761 0.35963 9.7485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33761 0.35963 9.7485 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1297200 977430 319810 0 0 0 0 0 0 1297200 977430 319810 0 0 0 0 0 0 0 0 0 20543 1455 21423 107566;107567 108967 108967 1 LIQLMEEIMAEK LQIVDVCMESEKDHKLIQLMEEIMAEKENK DHKLIQLMEEIMAEKENKTIIFVETKRRCD K L I E K E 1 0 0 0 0 1 3 0 0 2 2 1 2 0 0 0 0 0 0 0 0 0 12 0 1446.7462 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 406 417 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 4.3735E-05 95.573 By MS/MS By MS/MS By matching By MS/MS 3 3 2 1 1.1554 1.0697 4.8665 7 Median NaN NaN NaN 0 0 Median 1.1753 1.0065 0.74402 2 0 Median 1.0572 1.0885 3.0206 2 0 Median 1.2738 1.1077 4.9372 2 0 Median 1.0553 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median 61655000 29308000 32348000 0 0 0 52360000 24795000 27565000 6416700 3188200 3228600 372340 159890 212450 2506400 1165000 1341400 0 0 0 20544 343 21424;21425 107568;107569;107570;107571;107572;107573;107574;107575;107576 108968;108969;108970;108971;108972;108973;108974;108975;108976 108973 164;165 9 LIQLMEEIMAEKENK LQIVDVCMESEKDHKLIQLMEEIMAEKENK LIQLMEEIMAEKENKTIIFVETKRRCDDLT K L I N K T 1 0 1 0 0 1 4 0 0 2 2 2 2 0 0 0 0 0 0 0 0 0 15 1 1817.9267 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 406 420 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 0.0040575 27.969 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.0123 1.0781 9.5226 6 Median 1.1761 1.168 5.7081 2 0 Median NaN NaN NaN 0 0 Median 0.92647 1.0445 3.2598 2 0 Median NaN NaN NaN 0 0 Median 0.97125 1.0875 NaN 1 0 Median 1.055 0.91565 NaN 1 0 Median 32861000 16166000 16694000 4433000 1751000 2682000 0 0 0 17479000 9066800 8412700 0 0 0 10835000 5280600 5554200 113410 67924 45488 20545 343 21426 107577;107578;107579;107580;107581;107582 108977;108978;108979;108980 108977 4 LIQNNHYAMEDVATR AQEEKITALDEFATKLIQNNHYAMEDVATR LIQNNHYAMEDVATRRDALLSRRNALHERA K L I T R R 2 1 2 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 1 1 0 0 15 0 1773.8468 A0A0D9SF54;Q13813 Q13813 533 547 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.7159E-10 107.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 6 2 1 1.0226 0.92024 24.801 20 Median 1.206 1.1916 8.9759 3 0 Median 1.1385 0.9392 19.738 4 0 Median 0.84614 0.92234 17.561 4 0 Median 1.0325 0.89176 13.95 6 0 Median 0.61548 0.64356 63.347 2 0 Median 1.0638 0.86673 NaN 1 1 Median 342010000 162910000 179100000 17418000 7175000 10243000 116380000 52604000 63775000 105830000 55242000 50588000 90249000 42742000 47507000 11166000 4754800 6411100 972340 395750 576590 20546 264;2838 21427;21428 107583;107584;107585;107586;107587;107588;107589;107590;107591;107592;107593;107594;107595;107596;107597;107598;107599;107600;107601;107602 108981;108982;108983;108984;108985;108986;108987;108988;108989;108990;108991;108992;108993;108994;108995;108996;108997;108998;108999;109000;109001;109002;109003;109004 108989 127 24 LIQNNHYAMEDVATRR AQEEKITALDEFATKLIQNNHYAMEDVATR IQNNHYAMEDVATRRDALLSRRNALHERAM K L I R R D 2 2 2 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 1 1 0 0 16 1 1929.9479 A0A0D9SF54;Q13813 Q13813 533 548 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 1.254E-10 115.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 5 5 3 2 1.0744 1.1434 23.181 24 Median 1.1643 1.2652 28.002 5 1 Median 1.2657 1.1871 13.616 4 0 Median 0.80005 0.87926 25.738 5 0 Median 1.0902 0.98727 29.665 5 0 Median 0.98392 1.064 2.193 3 0 Plateau 1.2663 1.1279 12.923 2 0 Median 531480000 250550000 280930000 103700000 43295000 60408000 125780000 57356000 68427000 209080000 105140000 103930000 27511000 12836000 14675000 60665000 30122000 30544000 4737500 1795000 2942500 20547 264;2838 21429 107603;107604;107605;107606;107607;107608;107609;107610;107611;107612;107613;107614;107615;107616;107617;107618;107619;107620;107621;107622;107623;107624;107625;107626 109005;109006;109007;109008;109009;109010;109011;109012;109013;109014;109015;109016;109017;109018;109019;109020;109021;109022;109023;109024;109025;109026;109027;109028;109029;109030;109031;109032;109033 109025 29 LIQNVFEIK QVGDIFSNPETVLAKLIQNVFEIKLQSFVK ETVLAKLIQNVFEIKLQSFVKEQLEECRKS K L I I K L 0 0 1 0 0 1 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1102.6386 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 210 218 EXOC5 Exocyst complex component 5 yes no 2 0.0022569 73.248 By MS/MS By MS/MS By matching By matching 1 1 1 2 0.93969 0.90157 55.688 5 Median 0.86506 0.83754 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93969 0.97869 NaN 1 0 Median 1.0373 0.90157 NaN 1 0 Median 0.76166 0.76659 109.35 2 0 Median NaN NaN NaN 0 0 Median 11197000 5779800 5417300 3148400 1667900 1480500 0 0 0 6213600 3303000 2910600 661430 308760 352680 1173600 500140 673440 0 0 0 20548 181 21430 107627;107628;107629;107630;107631 109034;109035;109036 109036 3 LIQPDHPQISQQVAASLEK FSGVDMNAARLLFHKLIQPDHPQISQQVAA DHPQISQQVAASLEKNLIPKLTSSLPDVEA K L I E K N 2 0 0 1 0 4 1 0 1 2 2 1 0 0 2 2 0 0 0 1 0 0 19 0 2101.1168 Q5GLZ8 Q5GLZ8 470 488 HERC4 Probable E3 ubiquitin-protein ligase HERC4 yes yes 3 4.4531E-05 39.905 By MS/MS By matching 1 1 0.66724 0.60881 36.122 2 Median 0.48526 0.47158 NaN 1 0 Median 0.91746 0.78597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7942100 4991300 2950800 6925900 4310600 2615200 1016300 680650 335600 0 0 0 0 0 0 0 0 0 0 0 0 20549 3047 21431 107632;107633 109037 109037 1 LIQQFLTLRPDQQLHIFNTLR NVYIASFIRGPNPSKLIQQFLTLRPDQQLH TLRPDQQLHIFNTLRSHLIDKGMLTSTTED K L I L R S 0 2 1 1 0 4 0 0 1 2 5 0 0 2 1 0 2 0 0 0 0 0 21 1 2593.4493 O95674 O95674 409 429 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 4 3.5024E-05 37.969 By MS/MS 3 1.2122 1.2242 46.325 3 Median NaN NaN NaN 0 0 Median 1.2122 1.2242 46.325 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14493000 6260100 8233400 0 0 0 14493000 6260100 8233400 0 0 0 0 0 0 0 0 0 0 0 0 20550 1785 21432 107634;107635;107636 109038;109039 109039 2 LIQQQLEK IACNKQDIAMAKSAKLIQQQLEKELNTLRV AMAKSAKLIQQQLEKELNTLRVTRSAAPST K L I E K E 0 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 998.57605 Q9Y5M8;H7C4H2 Q9Y5M8 192 199 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.0037995 85.265 By MS/MS By MS/MS By MS/MS 1 1 2 1.447 1.3521 6.3963 4 Linear 1.3626 1.2877 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4649 1.376 NaN 1 0 Median 1.4618 1.2102 3.164 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18322000 7517400 10805000 6024200 2544200 3480000 0 0 0 8166000 3293800 4872200 4132200 1679400 2452900 0 0 0 0 0 0 20551 4463 21433 107637;107638;107639;107640 109040;109041;109042;109043;109044 109041 5 LIQSHPESAEDLQEK ALGDKVNSLGETAERLIQSHPESAEDLQEK LIQSHPESAEDLQEKCTELNQAWSSLGKRA R L I E K C 1 0 0 1 0 2 3 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 15 0 1722.8424 A0A0D9SF54;Q13813 Q13813 1299 1313 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.0865E-26 200.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 4 5 2 2 0.95116 0.88701 19.009 21 Median 1.1845 1.1409 16.287 3 0 Median 1.029 0.91004 8.6667 5 1 Median 0.81245 0.88738 22.485 4 0 Median 0.90956 0.84585 18.477 5 0 Median 0.86642 0.90768 3.2578 2 0 Median 0.95321 0.8011 4.6071 2 0 Median 461490000 234660000 226830000 29002000 13944000 15058000 137180000 63670000 73507000 183270000 99959000 83310000 82416000 41989000 40426000 21277000 10879000 10398000 8350100 4220500 4129600 20552 264;2838 21434 107641;107642;107643;107644;107645;107646;107647;107648;107649;107650;107651;107652;107653;107654;107655;107656;107657;107658;107659;107660;107661 109045;109046;109047;109048;109049;109050;109051;109052;109053;109054;109055;109056;109057;109058;109059;109060;109061;109062;109063;109064;109065;109066;109067;109068;109069;109070;109071;109072;109073;109074;109075;109076;109077;109078;109079;109080;109081;109082;109083 109064 39 LIQYCQSK AVNQIECHPYLTQEKLIQYCQSKGIVVTAY PYLTQEKLIQYCQSKGIVVTAYSPLGSPDR K L I S K G 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 8 0 1038.5168 P15121;E9PCX2 P15121 196 203 AKR1B1 Aldose reductase yes no 2 0.0085925 62.464 By MS/MS 2 1.5258 1.441 38.602 2 Median NaN NaN NaN 0 0 Median 1.5258 1.441 38.602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2865400 1372800 1492600 0 0 0 2865400 1372800 1492600 0 0 0 0 0 0 0 0 0 0 0 0 20553 2015 21435 107662;107663 109084 109084 1 LIRPEYAWIVQPVSGAVYDRPGASPK EKQGNCYLAALNCLRLIRPEYAWIVQPVSG PVSGAVYDRPGASPKRNHDGECTAAPTNRQ R L I P K R 3 2 0 1 0 1 1 2 0 2 1 1 0 0 4 2 0 1 2 3 0 0 26 2 2868.5286 Q12769;G3V198 Q12769 1134 1159 NUP160 Nuclear pore complex protein Nup160 yes no 4 7.862E-09 47.018 By MS/MS 1 0.50199 0.5659 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50199 0.5659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2598700 1558000 1040700 0 0 0 0 0 0 2598700 1558000 1040700 0 0 0 0 0 0 0 0 0 20554 2756 21436 107664 109085 109085 1 LIRPYMEPILK QSARMLGHLVSNAPRLIRPYMEPILKALIL NAPRLIRPYMEPILKALILKLKDPDPDPNP R L I L K A 0 1 0 0 0 0 1 0 0 2 2 1 1 0 2 0 0 0 1 0 0 0 11 1 1371.7948 P42345 P42345 767 777 MTOR Serine/threonine-protein kinase mTOR yes yes 2;3 0.0035801 63.184 By MS/MS 2 0.71994 0.72712 7.1559 2 Median 0.71994 0.72712 7.1559 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9171900 5036000 4135900 9171900 5036000 4135900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20555 2310 21437 107665;107666 109086;109087 109087 2 LISDIIR ITLIKGIDEGPEGLKLISDIIREKMGIDIS DEGPEGLKLISDIIREKMGIDISVLMGANI K L I I R E 0 1 0 1 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 7 0 828.5069 Q8N335;C9K0P5;C9JFA7;C9JM46 Q8N335 133 139 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein;Glycerol-3-phosphate dehydrogenase [NAD(+)] yes no 2 0.068716 64.803 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20556 3364 21438 107667 109088 109088 1 LISDINK MRANNQKVYMPREGKLISDINKAWERLEKA VYMPREGKLISDINKAWERLEKAEHERELA K L I N K A 0 0 1 1 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 7 0 801.45962 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 388 394 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.017757 64.803 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 2 1.155 1.0022 10.529 7 Median NaN NaN NaN 0 0 Median 1.1713 1.027 NaN 1 1 Median 0.86359 0.94247 8.686 2 0 Median 1.0223 0.92776 NaN 1 0 Median 1.1719 1.2379 NaN 1 0 Median 1.1891 1.005 2.1985 2 0 Median 24987000 12055000 12932000 0 0 0 7110800 3277300 3833500 8875900 4619000 4256900 1600900 737480 863460 2505300 1131800 1373500 4894100 2289700 2604400 20557 2681;1512 21439 107668;107669;107670;107671;107672;107673;107674 109089;109090;109091;109092;109093;109094 109090 6 LISEIEYR ETANQEYKVSSCEQRLISEIEYRLERSPVD VSSCEQRLISEIEYRLERSPVDESGDEVQY R L I Y R L 0 1 0 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1021.5444 Q8WX93;D6R9F5;F8WA26 Q8WX93 968 975 PALLD Palladin yes no 2 0.01337 53.166 By matching By MS/MS 1 1 1.3833 1.3359 15.492 2 Median NaN NaN NaN 0 0 Median 1.6842 1.4906 NaN 1 0 Median 1.1362 1.1973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4646100 2003300 2642800 0 0 0 663050 368010 295040 3983100 1635300 2347700 0 0 0 0 0 0 0 0 0 20558 3515 21440 107675;107676 109095 109095 1 LISEILSESVVPDVR SMKHTATARFQRNHRLISEILSESVVPDVR LISEILSESVVPDVRSVVTTARMQVLKRQV R L I V R S 0 1 0 1 0 0 2 0 0 2 2 0 0 0 1 3 0 0 0 3 0 0 15 0 1654.9142 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61 Q969G3 202 216 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 3.3122E-14 178.81 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 2 2 0.86678 0.86253 12.433 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85627 0.85207 10.339 5 0 Median 1.1252 0.98246 3.3218 2 0 Median 0.71754 0.72489 6.113 2 0 Median 1.0851 0.93116 0.88895 2 1 Median 105730000 57677000 48053000 0 0 0 0 0 0 85427000 46907000 38520000 1624400 784980 839410 4913300 2720400 2192900 13766000 7265000 6500600 20559 389 21441 107677;107678;107679;107680;107681;107682;107683;107684;107685;107686;107687 109096;109097;109098;109099;109100;109101;109102;109103;109104;109105;109106;109107 109099 12 LISELFQK QLLEAIVVATNPSGRLISELFQKLPSKVQY ATNPSGRLISELFQKLPSKVQYPDYYAIIK R L I Q K L 0 0 0 0 0 1 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 976.55933 Q86U86;E7EVG2;H0Y5B5;C9JPI5 Q86U86 203 210 PBRM1 Protein polybromo-1 yes no 2 0.012201 55.441 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 7 6 2 3 1.1742 1.0832 19.359 20 Median 1.0926 1.0338 NaN 1 0 Median 1.0522 0.91715 NaN 1 0 Median 0.9773 1.0449 21.788 7 0 Median 1.4296 1.2825 18.012 6 0 Median 1.0451 1.0845 23.991 2 0 Median 1.2812 1.0773 1.8998 3 0 Median 68663000 33447000 35216000 2673100 1183500 1489600 360460 190230 170230 45316000 22895000 22422000 13986000 6024300 7962000 5221800 2674400 2547500 1105000 480280 624730 20560 3273 21442 107688;107689;107690;107691;107692;107693;107694;107695;107696;107697;107698;107699;107700;107701;107702;107703;107704;107705;107706;107707 109108;109109;109110;109111;109112;109113 109112 6 LISENDDFEDMVVTR VLPENPITYAWEGGKLISENDDFEDMVVTR LISENDDFEDMVVTREDYEENGHSVCEEKF K L I T R E 0 1 1 3 0 0 2 0 0 1 1 0 1 1 0 1 1 0 0 2 0 0 15 0 1781.8142 G3V1Y1;Q9GZN1;F8VSD1;F8W057 G3V1Y1 283 297 ACTR6 Actin-related protein 6 yes no 2 6.5798E-08 102.4 By MS/MS 1 1.8534 1.8439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8534 1.8439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7120700 1820700 5300000 0 0 0 0 0 0 7120700 1820700 5300000 0 0 0 0 0 0 0 0 0 20561 1106 21443 107708 109114 109114 1 LISENSVYEK PSEDAAIPSKSRLKRLISENSVYEKRPDFR SRLKRLISENSVYEKRPDFRMCWYVHPQVL R L I E K R 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 10 0 1180.5976 Q13111 Q13111 801 810 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 0.0049372 51.445 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.97898 0.99895 13.537 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93764 1.0051 NaN 1 1 Median 1.1519 0.99284 NaN 1 0 Median 1.0214 1.0459 NaN 1 0 Median 0.93829 0.77662 NaN 1 0 Median 22508000 11015000 11493000 0 0 0 0 0 0 7814300 4332600 3481600 4269600 1776000 2493600 8671600 4116400 4555300 1752100 790060 962080 20562 2785 21444 107709;107710;107711;107712 109115;109116;109117;109118;109119 109118 5 LISETTSVCKPEQVAK PGFAEENRTKPLETRLISETTSVCKPEQVA ISETTSVCKPEQVAKQIVKDAIVVTMGLFR R L I A K Q 1 0 0 0 1 1 2 0 0 1 1 2 0 0 1 2 2 0 0 2 0 0 16 1 1788.9291 K7ERC8;Q06136 K7ERC8 237 252 KDSR 3-ketodihydrosphingosine reductase yes no 3 0.062054 10.861 By MS/MS 2 0.7791 0.72924 62.829 2 Median NaN NaN NaN 0 0 Median 0.7791 0.72924 62.829 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8846700 4635500 4211200 0 0 0 8846700 4635500 4211200 0 0 0 0 0 0 0 0 0 0 0 0 20563 1397 21445 107713;107714 109120 109120 1 LISGEEHFSSK KCKISSYCRSQPPARLISGEEHFSSKKCLA PPARLISGEEHFSSKKCLAWFYEYAGPDEV R L I S K K 0 0 0 0 0 0 2 1 1 1 1 1 0 1 0 3 0 0 0 0 0 0 11 0 1232.6037 Q9BTE7;H0YCN4;E9PQV9 Q9BTE7 39 49 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 3 0.00074163 51.841 By matching By MS/MS 1 1 1.2182 1.0753 5.3801 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1867 1.117 NaN 1 0 Median 1.2506 1.0352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8208600 3640000 4568600 0 0 0 0 0 0 6391200 2926400 3464800 1817400 713640 1103800 0 0 0 0 0 0 20564 3826 21446 107715;107716 109121;109122 109122 2 LISGEEHFSSKK KCKISSYCRSQPPARLISGEEHFSSKKCLA PARLISGEEHFSSKKCLAWFYEYAGPDEVV R L I K K C 0 0 0 0 0 0 2 1 1 1 1 2 0 1 0 3 0 0 0 0 0 0 12 1 1360.6987 Q9BTE7;H0YCN4;E9PQV9 Q9BTE7 39 50 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 3 0.034496 18.073 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0838 1.0897 9.4857 5 Median 1.0714 1.0897 NaN 1 0 Median 1.1671 1.0525 8.8803 2 0 Median 1.2206 1.227 NaN 1 0 Median 1.0838 0.97495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5284000 1983600 3300400 594730 284620 310110 927780 395430 532350 2636400 880330 1756100 1125100 423180 701870 0 0 0 0 0 0 20565 3826 21447 107717;107718;107719;107720;107721 109123;109124;109125 109123 3 LISGLPSLNHPVEPK EEETLWLRIRSLTLRLISGLPSLNHPVEPK LISGLPSLNHPVEPKNSEKTAENGVSSRID R L I P K N 0 0 1 0 0 0 1 1 1 1 3 1 0 0 3 2 0 0 0 1 0 0 15 0 1599.8984 Q14CX7 Q14CX7 696 710 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 3 0.012785 23.481 By matching By MS/MS 1 1 1.0662 0.92472 35.741 2 Median NaN NaN NaN 0 0 Median 1.3535 1.1906 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83998 0.71821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4709200 2709900 1999300 0 0 0 2039800 1172600 867260 0 0 0 2669400 1537300 1132100 0 0 0 0 0 0 20566 2908 21448 107722;107723 109126;109127 109127 2 LISGWVSR PLIRSMRTVKRETLKLISGWVSRSNDPQMV VKRETLKLISGWVSRSNDPQMVAENFVPPL K L I S R S 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 2 0 1 0 1 0 0 8 0 916.51305 O14980 O14980 758 765 XPO1 Exportin-1 yes yes 2 0.0023085 111.82 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 1 1.2592 1.1294 11.626 7 Median 1.172 1.1275 NaN 1 0 Median 1.3583 1.1525 13.745 2 0 Median 1.0038 1.0821 24.083 2 0 Median 1.3262 1.1294 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3933 1.1322 NaN 1 0 Median 65364000 28551000 36813000 25995000 11694000 14301000 23953000 9952000 14001000 10800000 4932400 5867600 2090400 903300 1187100 0 0 0 2525600 1068900 1456700 20567 1510 21449 107724;107725;107726;107727;107728;107729;107730 109128;109129;109130;109131;109132 109129 5 LISIWSR RLGSESQYSPTPLLKLISIWSRNARYFPLL YSPTPLLKLISIWSRNARYFPLLAKQKPGH K L I S R N 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 0 7 0 873.50724 O75691 O75691 1205 1211 UTP20 Small subunit processome component 20 homolog yes yes 2 0.026054 53.554 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.2318 1.1036 31.12 5 Median NaN NaN NaN 0 0 Median 1.2769 1.1036 NaN 1 0 Median 0.81878 0.89675 53.837 2 1 Median NaN NaN NaN 0 0 Median 1.2318 1.2936 NaN 1 0 Median 1.2918 1.0954 NaN 1 0 Median 10842000 5804900 5036800 0 0 0 682900 304120 378780 7406200 4350500 3055700 0 0 0 2661000 1103300 1557700 91638 46997 44642 20568 1691 21450 107731;107732;107733;107734;107735 109133;109134 109134 2 LISKFDKLPVK FSGKDKPASENSEEKLISKFDKLPVKIVQK SEEKLISKFDKLPVKIVQKNDPFVVDCSDK K L I V K I 0 0 0 1 0 0 0 0 0 1 2 3 0 1 1 1 0 0 0 1 0 0 11 2 1286.7962 O14497;H0Y488;A0A1B0GTU5 O14497 1805 1815 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.013818 27.149 By MS/MS By matching 2 1 0.83603 0.97865 4.0213 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85441 1.0081 5.1447 2 0 Median NaN NaN NaN 0 0 Median 0.83603 0.97865 NaN 1 0 Median NaN NaN NaN 0 0 Median 10009000 5413000 4596200 0 0 0 0 0 0 8708800 4733100 3975700 0 0 0 1300500 679980 620520 0 0 0 20569 1480 21451 107736;107737;107738 109135 109135 1 LISLFQAMK AERAVTGYKDPYSGKLISLFQAMKKGLILK DPYSGKLISLFQAMKKGLILKDHGIRLLEA K L I M K K 1 0 0 0 0 1 0 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 9 0 1049.5943 Q15149;H0YDN1 Q15149 4159 4167 PLEC Plectin yes no 2 0.0039055 79.469 By MS/MS By matching By MS/MS By matching By matching 3 2 1 1 2 1.4784 1.3318 16.3 8 Median 1.237 1.2042 1.2556 2 1 Median 1.4209 1.2446 5.6948 2 0 Median 1.4625 1.5646 NaN 1 0 Median 2.0104 1.8898 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7053 1.4442 7.5801 2 0 Median 43324000 18276000 25049000 19634000 8528200 11106000 11890000 5037300 6852300 9401000 3804900 5596100 907320 278510 628810 0 0 0 1492800 627010 865760 20570 2933 21452 107739;107740;107741;107742;107743;107744;107745;107746;107747 109136;109137;109138 109136 3 LISLPLSR MADVVVGKDKGGEQRLISLPLSRIRVIMKS DKGGEQRLISLPLSRIRVIMKSSPEVSSIN R L I S R I 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 8 0 897.56475 E5RGS9;Q9NRG0 E5RGS9 16 23 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 0.0024695 121.99 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 1 0.94201 0.90039 13.587 9 Median 0.89948 0.87297 6.9444 3 0 Median 1.047 0.89307 15.806 2 0 Median 0.89026 0.90039 NaN 1 0 Median 1.0605 0.8326 NaN 1 0 Median 0.95439 1.0103 NaN 1 0 Median 1.5019 1.2335 NaN 1 0 Median 60270000 31018000 29251000 21932000 11342000 10590000 6260400 3063700 3196700 21243000 11312000 9930800 7302200 3569500 3732800 3411100 1681000 1730100 120510 49925 70590 20571 842 21453 107748;107749;107750;107751;107752;107753;107754;107755;107756 109139;109140;109141;109142;109143;109144 109142 6 LISLTDENALSGNEELTVK RELISNASDALDKIRLISLTDENALSGNEE TDENALSGNEELTVKIKCDKEKNLLHVTDT R L I V K I 1 0 2 1 0 0 3 1 0 1 4 1 0 0 0 2 2 0 0 1 0 0 19 0 2045.0528 P14625;Q96GW1;A0A1W2PRR1 P14625 117 135 HSP90B1 Endoplasmin yes no 2 1.9407E-18 123.02 By MS/MS By MS/MS 2 1 1.0145 0.97678 9.3388 3 Median 0.99883 0.95426 3.2981 2 0 Median 1.2762 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43978000 19553000 24425000 28820000 13342000 15478000 15158000 6210300 8947300 0 0 0 0 0 0 0 0 0 0 0 0 20572 2006 21454 107757;107758;107759 109145;109146;109147;109148;109149;109150;109151;109152;109153 109146 9 LISPESTVMLLEAQAATGGIIDPHR SPKEKYSLVEAKRKKLISPESTVMLLEAQA LEAQAATGGIIDPHRNEKLTVDSAIARDLI K L I H R N 3 1 0 1 0 1 2 2 1 3 3 0 1 0 2 2 2 0 0 1 0 0 25 0 2618.3738 P15924 P15924 2039 2063 DSP Desmoplakin yes yes 2 0.00018705 39.629 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3218500 3218500 0 0 0 0 0 0 0 3218500 3218500 0 0 0 0 0 0 0 0 0 0 20573 2021 21455 107760 109154 109154 1 LISPLASPADGVK TEKESAWSPPPIEIRLISPLASPADGVKSK IRLISPLASPADGVKSKPRKTTEVTGTGLG R L I V K S 2 0 0 1 0 0 0 1 0 1 2 1 0 0 2 2 0 0 0 1 0 0 13 0 1266.7184 Q8WYP5 Q8WYP5 2220 2232 AHCTF1 Protein ELYS yes yes 2 0.00238 65.5 By MS/MS 1 0.89262 0.9926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89262 0.9926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6544100 3366900 3177200 0 0 0 0 0 0 6544100 3366900 3177200 0 0 0 0 0 0 0 0 0 20574 3524 21456 107761 109155 109155 1 LISQDIHSNTYNYK FLQCTVPCRYKASQRLISQDIHSNTYNYKS RLISQDIHSNTYNYKSTFSVEIVPICKDNV R L I Y K S 0 0 2 1 0 1 0 0 1 2 1 1 0 0 0 2 1 0 2 0 0 0 14 0 1694.8264 C9JA08;Q96D46 C9JA08 226 239 NMD3 60S ribosomal export protein NMD3 yes no 2;3 4.3415E-05 79.875 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.3247 1.267 15.369 7 Median 1.2764 1.2114 20.934 2 1 Median 1.0793 0.9179 NaN 1 0 Median 1.315 1.3208 4.4816 2 0 Median 1.4754 1.2667 0.031194 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32848000 14396000 18452000 10561000 4679400 5882000 5707100 3073900 2633200 10884000 4410100 6474100 5695000 2232600 3462400 0 0 0 0 0 0 20575 683 21457 107762;107763;107764;107765;107766;107767;107768 109156;109157;109158;109159;109160;109161;109162;109163;109164 109162 9 LISQIQPEVDR INYSKIDDFPNELEKLISQIQPEVDRERAV ELEKLISQIQPEVDRERAVVEVNIPVESEV K L I D R E 0 1 0 1 0 2 1 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1296.7038 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 407 417 HELLS Lymphoid-specific helicase yes no 2 0.00013837 87.308 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 0.95047 0.89069 23.705 6 Median 1.2119 1.2096 NaN 1 0 Median 0.97486 0.84602 NaN 1 0 Median 0.88503 0.93771 NaN 1 0 Median 0.90428 0.77425 2.5454 2 0 Median NaN NaN NaN 0 0 Median 1.6625 1.3533 NaN 1 0 Median 30796000 15149000 15647000 1529200 527500 1001700 2423300 1257500 1165800 18050000 8942200 9108000 7557400 4075300 3482100 0 0 0 1235700 346320 889360 20576 211 21458 107769;107770;107771;107772;107773;107774 109165;109166;109167;109168;109169 109169 5 LISQIQPEVDRER INYSKIDDFPNELEKLISQIQPEVDRERAV EKLISQIQPEVDRERAVVEVNIPVESEVNL K L I E R A 0 2 0 1 0 2 2 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 13 1 1581.8475 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 407 419 HELLS Lymphoid-specific helicase yes no 2;3 5.5651E-06 95.018 By matching By MS/MS By matching By matching By MS/MS 1 3 2 1 1 0.85592 0.93708 24.059 7 Median 0.6358 0.70639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95237 1.1004 20.536 2 1 Median 0.90424 0.8422 36.51 2 0 Median 0.86246 0.93708 NaN 1 0 Median 0.85592 0.77375 NaN 1 0 Median 46564000 24778000 21786000 7950900 5188800 2762100 0 0 0 27343000 13836000 13507000 3482400 1808400 1674000 4906300 2477800 2428500 2881200 1467500 1413800 20577 211 21459 107775;107776;107777;107778;107779;107780;107781;107782 109170;109171;109172;109173;109174 109171 5 LISQIVSSITASLR RNLDIERPTYTNLNRLISQIVSSITASLRF RLISQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 0 0 3 2 0 0 0 0 4 1 0 0 1 0 0 14 0 1486.8719 Q9BQE3;F5H5D3;F8VVB9;Q9H853;P68363;P68366;C9JDS9 P68363 230 243 TUBA1C;TUBA1B;TUBA4B;TUBA4A Tubulin alpha-1C chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 2;3 3.6941E-69 202.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 23 5 4 2 8 1.2676 1.1024 22.573 48 Median 1.4018 1.3741 17.148 8 0 Median 1.1597 0.98385 10.875 22 2 Median 1.2685 1.2288 5.6764 5 0 Median 1.3539 1.1361 2.6777 3 0 Median 2.4107 2.5045 5.6347 2 0 Median 1.4122 1.0944 7.0361 8 0 Median 3834700000 1792100000 2042600000 8860000 3807800 5052200 2767800000 1314900000 1452900000 1001400000 450050000 551360000 3281000 1395400 1885600 2610800 809390 1801400 50770000 21124000 29646000 20578 2633;1034 21460 107783;107784;107785;107786;107787;107788;107789;107790;107791;107792;107793;107794;107795;107796;107797;107798;107799;107800;107801;107802;107803;107804;107805;107806;107807;107808;107809;107810;107811;107812;107813;107814;107815;107816;107817;107818;107819;107820;107821;107822;107823;107824;107825;107826;107827;107828;107829;107830;107831;107832 109175;109176;109177;109178;109179;109180;109181;109182;109183;109184;109185;109186;109187;109188;109189;109190;109191;109192;109193;109194;109195;109196;109197;109198;109199;109200;109201;109202;109203;109204;109205;109206;109207;109208;109209;109210;109211 109201 37 LISSDGHEFIVK KTYGGCEGPDAMYVKLISSDGHEFIVKREH YVKLISSDGHEFIVKREHALTSGTIKAMLS K L I V K R 0 0 0 1 0 0 1 1 1 2 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1343.7085 Q15369;E5RHG8;R4GMY8 Q15369 21 32 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2;3 7.0953E-06 131.82 By MS/MS By MS/MS By MS/MS By matching 4 5 3 1 1.1371 0.97979 26.147 13 Median 1.102 1.0079 39.977 4 0 Median 1.1589 0.9505 24.223 5 0 Median 1.0873 1.033 12.854 3 0 Median 1.1978 0.97622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 265320000 121860000 143460000 63780000 30416000 33364000 137720000 61721000 76001000 62720000 29245000 33476000 1098600 481310 617250 0 0 0 0 0 0 20579 846 21461 107833;107834;107835;107836;107837;107838;107839;107840;107841;107842;107843;107844;107845 109212;109213;109214;109215;109216;109217;109218;109219;109220;109221;109222;109223;109224 109222 13 LISSDGHEFIVKR KTYGGCEGPDAMYVKLISSDGHEFIVKREH VKLISSDGHEFIVKREHALTSGTIKAMLSG K L I K R E 0 1 0 1 0 0 1 1 1 2 1 1 0 1 0 2 0 0 0 1 0 0 13 1 1499.8096 Q15369;E5RHG8;R4GMY8 Q15369 21 33 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2;3 3.8603E-22 157.38 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.1317 1.0895 12.142 6 Median 1.0888 1.0677 NaN 1 0 Median 1.1732 1.0358 10.008 2 1 Median 1.026 1.0852 15.673 2 0 Median 1.4092 1.3105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199660000 89534000 110130000 58717000 26985000 31732000 116000000 49125000 66874000 24311000 13187000 11124000 637630 237470 400160 0 0 0 0 0 0 20580 846 21462 107846;107847;107848;107849;107850;107851;107852;107853 109225;109226;109227;109228;109229;109230;109231;109232;109233 109232 9 LISSLLR CLQEGAEISSPAVERLISSLLRTCDLEEFQ ISSPAVERLISSLLRTCDLEEFQTCLVRHC R L I L R T 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 7 0 800.51199 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 624 630 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.00617 94.163 By MS/MS 2 1.2292 1.1857 11.58 2 Median 1.2292 1.1857 11.58 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37375000 17218000 20157000 37375000 17218000 20157000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20581 3782 21463 107854;107855 109234;109235;109236 109234 3 LISSTESELQQSYAK RCDQATAESNPVTQKLISSTESELQQSYAK LISSTESELQQSYAKQRRSKSAALLHKELN K L I A K Q 1 0 0 0 0 2 2 0 0 1 2 1 0 0 0 4 1 0 1 0 0 0 15 0 1682.8363 O43149 O43149 2567 2581 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 2 2.2274E-09 148.28 By MS/MS By MS/MS 1 2 1.4226 1.2406 7.721 3 Median 1.1349 1.1373 NaN 1 0 Median 1.474 1.2829 4.739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17757000 7113600 10643000 12465000 5130400 7334400 5292200 1983200 3308900 0 0 0 0 0 0 0 0 0 0 0 0 20582 1555 21464 107856;107857;107858 109237;109238;109239;109240 109240 4 LISSVDPQFLK AWAMRAMQHAEVYYKLISSVDPQFLKLTKV VYYKLISSVDPQFLKLTKVDDQIYSEFRKN K L I L K L 0 0 0 1 0 1 0 0 0 1 2 1 0 1 1 2 0 0 0 1 0 0 11 0 1245.6969 Q9BVG4;A6NDF3 Q9BVG4 53 63 PBDC1 Protein PBDC1 yes no 2 0.028804 31.934 By MS/MS By matching By MS/MS By matching 2 1 1 2 1.0391 0.90688 24.648 6 Median 0.74979 0.69234 37.162 2 0 Median 1.0876 0.91339 NaN 1 0 Median 0.70514 0.76701 NaN 1 0 Median 1.1436 1.0067 10.12 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55613000 27927000 27686000 36424000 18696000 17728000 13754000 6374500 7379400 2831800 1614400 1217400 2603100 1242400 1360700 0 0 0 0 0 0 20583 3852 21465 107859;107860;107861;107862;107863;107864 109241;109242 109241 2 LISTLENLYER KLLYVTPEKICASNRLISTLENLYERKLLA ASNRLISTLENLYERKLLARFVIDEAHCVS R L I E R K 0 1 1 0 0 0 2 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 11 0 1349.7191 H0YNU5;A0A3B3IT82;P54132 H0YNU5 776 786 BLM Bloom syndrome protein yes no 2 0.00039537 99.653 By MS/MS 1 0.7145 0.78497 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7145 0.78497 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3357900 2067400 1290500 0 0 0 0 0 0 3357900 2067400 1290500 0 0 0 0 0 0 0 0 0 20584 434 21466 107865 109243 109243 1 LISTLIYK RFLNWIPLGYIFETKLISTLIYKFLNVPMF GYIFETKLISTLIYKFLNVPMFRNVSLKCL K L I Y K F 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 1 1 0 1 0 0 0 8 0 949.58482 O14980 O14980 246 253 XPO1 Exportin-1 yes yes 2 0.003446 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0734 1.0125 82.195 5 Median 1.0734 1.0315 NaN 1 1 Median 1.2571 1.0606 NaN 1 1 Median 0.14819 0.15872 NaN 1 1 Median 1.2064 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0528 0.86205 NaN 1 0 Median 112870000 80943000 31923000 33149000 16087000 17062000 18436000 8333100 10103000 59722000 55764000 3957700 1282600 639750 642890 0 0 0 276310 119210 157100 20585 1510 21467 107866;107867;107868;107869;107870;107871;107872 109244;109245;109246;109247;109248;109249;109250 109244 7 LISVETDIVVDHYKEEK DELTLLHLREFDKKKLISVETDIVVDHYKE SVETDIVVDHYKEEKFEDRSPAAECLSEKE K L I E K F 0 0 0 2 0 0 3 0 1 2 1 2 0 0 0 1 1 0 1 3 0 0 17 1 2016.0415 I3L0K7;Q12931 Q12931 547 563 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 4 0.034893 13.986 By MS/MS 1 1.7153 1.6148 NaN 1 Median 1.7153 1.6148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7652300 3220100 4432200 7652300 3220100 4432200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20586 2771;1269 21468 107873 109251 109251 1 LISVFMR ILKSACSNNPSYIDRLISVFMRSLQKMVRE NNPSYIDRLISVFMRSLQKMVREHLNPQAA R L I M R S 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 0 7 0 864.48914 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2270 2276 TRRAP Transformation/transcription domain-associated protein yes no 2 0.009267 84.359 By matching By MS/MS By matching 1 1 1 1.1956 1.0404 6.3826 3 Median NaN NaN NaN 0 0 Median 1.3386 1.1605 NaN 1 0 Median 0.98769 1.0404 NaN 1 0 Median 1.1956 1.0378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14805000 7696800 7107800 0 0 0 626540 269050 357490 13765000 7248100 6517300 412700 179670 233030 0 0 0 0 0 0 20587 991 21469 107874;107875;107876 109252;109253 109253 2 LISWYDNEFGYSNR FDAGAGIALNDHFVKLISWYDNEFGYSNRV KLISWYDNEFGYSNRVVDLMAHMASKE___ K L I N R V 0 1 2 1 0 0 1 1 0 1 1 0 0 1 0 2 0 1 2 0 0 0 14 0 1762.7951 P04406;E7EUT5 P04406 310 323 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 8.8103E-35 192.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 13 7 7 1 5 2 1.0942 2.6537 25.008 35 Linear 1.0436 1.0398 14.207 13 0 Median 1.1247 0.95668 13.458 7 0 Median 0.94004 0.90692 31.685 7 3 Median 1.1879 1.008 NaN 1 0 Median 0.8374 0.80846 50.291 5 1 Median 1.3173 1.0738 23.21 2 0 Median 1048400000 476540000 571820000 754500000 344640000 409860000 101010000 45368000 55643000 172600000 77698000 94907000 6978700 3017900 3960800 11923000 5228300 6695000 1341900 585670 756220 20588 1850 21470 107877;107878;107879;107880;107881;107882;107883;107884;107885;107886;107887;107888;107889;107890;107891;107892;107893;107894;107895;107896;107897;107898;107899;107900;107901;107902;107903;107904;107905;107906;107907;107908;107909;107910;107911 109254;109255;109256;109257;109258;109259;109260;109261;109262;109263;109264;109265;109266;109267;109268;109269;109270;109271;109272;109273;109274;109275;109276;109277;109278;109279;109280;109281;109282;109283;109284;109285;109286;109287;109288;109289;109290;109291;109292;109293;109294;109295;109296;109297;109298;109299;109300;109301;109302;109303 109283 50 LITAADTTAEQR ARKKEREKRSQDLQKLITAADTTAEQRRTE LQKLITAADTTAEQRRTERKAPKKKLPQKK K L I Q R R 3 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 3 0 0 0 0 0 12 0 1288.6623 Q9NPF5;Q5TG40 Q9NPF5 271 282 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2 3.0793E-06 123.63 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1034 0.97963 18.892 5 Median 1.1727 1.2005 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95315 0.97963 NaN 1 0 Median 1.1034 0.94843 NaN 1 0 Median 1.1448 1.1503 NaN 1 0 Median 0.86526 0.7446 NaN 1 0 Median 16413000 8005200 8407400 919340 381830 537510 0 0 0 5433300 2829000 2604300 2176400 957810 1218600 3650000 1789300 1860700 4233500 2047300 2186200 20589 4050 21471 107912;107913;107914;107915;107916 109304;109305;109306;109307;109308;109309;109310;109311 109310 8 LITALGSSEVQPQFTR NQNQLHLCVESTALRLITALGSSEVQPQFT ITALGSSEVQPQFTRFLSDPKTVLSAESEE R L I T R F 1 1 0 0 0 2 1 1 0 1 2 0 0 1 1 2 2 0 0 1 0 0 16 0 1745.9312 Q5JWT2;Q9ULK4 Q5JWT2 658 673 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 2 2.5356E-10 158.4 By matching By matching By MS/MS 1 1 1 1.0586 0.99819 4.7112 3 Median 1.0586 1.0461 NaN 1 0 Median 1.0757 0.95204 NaN 1 0 Median 0.90773 0.99819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12335000 6459600 5875400 2062200 1203000 859210 665530 274200 391340 9607200 4982400 4624800 0 0 0 0 0 0 0 0 0 20590 3059 21472 107917;107918;107919 109312;109313 109312 2 LITAVVMK TQKKYFAKSQSKITRLITAVVMKNWKEIVE SQSKITRLITAVVMKNWKEIVESCDLKNWR R L I M K N 1 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 2 0 0 8 0 873.53576 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 628 635 SEC31A Protein transport protein Sec31A yes no 2 0.016506 49.358 By MS/MS By MS/MS By matching 1 1 1 1.2984 1.266 15.73 3 Plateau 1.2984 1.266 NaN 1 0 Median 1.3978 1.2222 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1287 0.94887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8481000 3268800 5212200 5200200 1832500 3367600 2579700 1158900 1420900 0 0 0 701070 277410 423660 0 0 0 0 0 0 20591 823 21473 107920;107921;107922 109314;109315;109316;109317 109314 4 LITDEFVK LRPGIHHSLFGDVKKLITDEFVKQKYLDYA LFGDVKKLITDEFVKQKYLDYARVPNSNPP K L I V K Q 0 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 8 0 963.5277 Q9UNF1;Q5H909;Q5H907;A0A087X070;G5E9N2;Q12816 Q9UNF1 415 422 MAGED2;TRO Melanoma-associated antigen D2;Trophinin yes no 2 0.0078694 65.252 By MS/MS 2 0.91031 0.84953 1.3922 2 Median 0.91031 0.84953 1.3922 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15276000 8061400 7214300 15276000 8061400 7214300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20592 4343 21474 107923;107924 109318;109319;109320;109321 109319 4 LITDLQDQNQK KQISSLRDEVEAKAKLITDLQDQNQKMMLE AKAKLITDLQDQNQKMMLEQERLRVEHEKL K L I Q K M 0 0 1 2 0 3 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1314.6779 P33176 P33176 729 739 KIF5B Kinesin-1 heavy chain yes yes 2 7.8742E-37 186.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1 1 1.0962 0.93631 35.839 7 Median 0.8382 0.81004 NaN 1 1 Median 1.1376 1.058 31.059 2 1 Median 1.4714 1.5789 NaN 1 1 Median 1.0962 0.93631 NaN 1 0 Median 1.4103 1.4584 NaN 1 1 Median 0.71925 0.594 NaN 1 0 Median 78582000 36879000 41703000 13992000 6537800 7453800 54031000 26071000 27959000 2294200 882380 1411800 2551100 943700 1607400 4005200 1417900 2587300 1709500 1026000 683500 20593 2221 21475 107925;107926;107927;107928;107929;107930;107931;107932 109322;109323;109324;109325;109326;109327;109328;109329 109325 8 LITDNTVEER RAHRIGQKKPVRVFRLITDNTVEERIVERA VRVFRLITDNTVEERIVERAEIKLRLDSIV R L I E R I 0 1 1 1 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1188.5986 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 610 619 SMARCA1 Probable global transcription activator SNF2L1 no no 2 6.7789E-05 133.57 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.4883 1.2059 17.752 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8856 0.97388 NaN 1 0 Median 1.5109 1.2859 NaN 1 0 Median 1.0212 1.0446 14.15 2 0 Median 1.6711 1.3917 12.103 3 2 Median 44493000 20386000 24107000 0 0 0 0 0 0 9290600 4721600 4569100 2537900 923300 1614600 25880000 12350000 13529000 6784500 2390800 4393700 20594 167;643 21476 107933;107934;107935;107936;107937;107938;107939 109330;109331;109332;109333;109334;109335;109336;109337;109338 109334 9 LITEDVQGK LADLQNDEVAFRKFKLITEDVQGKNCLTNF AFRKFKLITEDVQGKNCLTNFHGMDLTRDK K L I G K N 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1001.5393 P61247;E9PFI5;D6RG13;D6RAT0;H0Y8L7;D6RB09;D6RAS7;D6RED7;D6RGE0 P61247 86 94 RPS3A 40S ribosomal protein S3a yes no 2 0.00066073 106.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 4 4 1.2734 1.109 26.862 17 Median 1.1218 1.0146 25.115 3 0 Median 1.2142 1.0389 16.741 4 0 Median 1.1788 1.1337 NaN 1 0 Median 1.327 1.109 NaN 1 0 Median 1.485 1.5507 29.318 4 0 Median 1.3032 1.0692 14.741 4 0 Median 256190000 114800000 141400000 101930000 46975000 54955000 82401000 37094000 45307000 8108300 3583900 4524400 20009000 8136000 11873000 29174000 12661000 16514000 14571000 6346400 8224700 20595 2553 21477 107940;107941;107942;107943;107944;107945;107946;107947;107948;107949;107950;107951;107952;107953;107954;107955;107956 109339;109340;109341;109342;109343;109344;109345;109346;109347;109348;109349;109350;109351;109352 109346 14 LITFNEADESVNYK LLGSLRHMAPIRKRRLITFNEADESVNYKT RLITFNEADESVNYKTGPKPVRFLGPSTST R L I Y K T 1 0 2 1 0 0 2 0 0 1 1 1 0 1 0 1 1 0 1 1 0 0 14 0 1641.7886 Q6PI47 Q6PI47 257 270 KCTD18 BTB/POZ domain-containing protein KCTD18 yes yes 2 2.139E-11 178.08 By MS/MS By MS/MS 1 1 1.3862 1.2879 36.958 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0301 0.99174 NaN 1 0 Median 1.8654 1.6726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23424000 10614000 12810000 0 0 0 0 0 0 17515000 8541000 8973700 5909700 2073500 3836200 0 0 0 0 0 0 20596 3170 21478 107957;107958 109353;109354;109355;109356 109354 4 LITGASDSELR RTEVWGLVLLSEEKRLITGASDSELRVWDI EEKRLITGASDSELRVWDIAYLQEIEDPEE R L I L R V 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1160.6037 Q9UNX4 Q9UNX4 206 216 WDR3 WD repeat-containing protein 3 yes yes 2 0.00088993 85.731 By MS/MS 1 1.3622 1.4489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3622 1.4489 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7611700 3241200 4370600 0 0 0 0 0 0 7611700 3241200 4370600 0 0 0 0 0 0 0 0 0 20597 4351 21479 107959 109357 109357 1 LITGLGVGR RGRPKGSEMKYALKRLITGLGVGRETARPC KYALKRLITGLGVGRETARPCYSLALAQLL R L I G R E 0 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 884.54435 Q9BQG0 Q9BQG0 77 85 MYBBP1A Myb-binding protein 1A yes yes 2 6.9018E-16 183.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 3 1.1834 1.0906 14.721 12 Median NaN NaN NaN 0 0 Median 1.2234 1.0297 NaN 1 0 Median 1.2844 1.3922 11.693 2 0 Median 1.1924 1.0291 7.4984 2 0 Median 1.1409 1.1827 8.3083 4 0 Median 1.175 0.96742 3.3102 3 0 Plateau 120030000 54806000 65222000 0 0 0 6025500 2585900 3439600 61302000 27349000 33953000 7592500 3401500 4191000 37324000 17960000 19364000 7783900 3509900 4273900 20598 3789 21480 107960;107961;107962;107963;107964;107965;107966;107967;107968;107969;107970;107971 109358;109359;109360;109361;109362;109363;109364;109365;109366;109367;109368;109369;109370;109371 109359 14 LITKPSEGTTLR REQKEKTGEEINFGKLITKPSEGTTLRVED FGKLITKPSEGTTLRVEDLVKQYFQTAEKN K L I L R V 0 1 0 0 0 0 1 1 0 1 2 1 0 0 1 1 3 0 0 0 0 0 12 1 1314.7507 P49959;F8W7U8 P49959 417 428 MRE11A Double-strand break repair protein MRE11A yes no 3 0.00016443 76.522 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 3 4 3 1 1 0.92561 0.92738 52.079 14 Median 0.98586 0.98707 9.7525 2 0 Median 0.4938 0.45137 93.872 3 0 Median 0.85498 0.92823 13.605 4 0 Median 0.99479 0.9335 39.209 3 0 Median 0.99435 1.0986 NaN 1 0 Median 0.94707 0.86796 NaN 1 0 Median 53950000 27019000 26932000 3192000 1302600 1889400 5305400 3310700 1994700 32360000 16170000 16190000 9305100 4275000 5030100 2882200 1507500 1374700 906190 453540 452650 20599 2407 21481 107972;107973;107974;107975;107976;107977;107978;107979;107980;107981;107982;107983;107984;107985 109372;109373;109374;109375;109376;109377;109378 109374 7 LITLEEEMTK LEFFGLKKEECPAVRLITLEEEMTKYKPES CPAVRLITLEEEMTKYKPESEELTAERITE R L I T K Y 0 0 0 0 0 0 3 0 0 1 2 1 1 0 0 0 2 0 0 0 0 0 10 0 1205.6213 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 317 326 P4HB Protein disulfide-isomerase yes no 2 0.00015971 130.56 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 1.2959 1.1823 12.5 9 Median 1.2677 1.1729 1.8887 4 1 Median 1.5248 1.2863 6.1379 3 0 Plateau 1.1212 1.1249 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7655 1.6837 NaN 1 0 Median NaN NaN NaN 0 0 Median 240340000 102590000 137760000 182570000 79664000 102910000 48994000 19193000 29800000 5099900 2422300 2677600 0 0 0 3674500 1305800 2368600 0 0 0 20600 1883 21482;21483 107986;107987;107988;107989;107990;107991;107992;107993;107994;107995 109379;109380;109381;109382;109383;109384;109385;109386;109387;109388;109389;109390 109382 650 12 LITNTAEAVLQK RSRYSGVNQSMLFDKLITNTAEAVLQKMDD FDKLITNTAEAVLQKMDDMKKMRRQRMREL K L I Q K M 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1299.7398 Q6PL18 Q6PL18 176 187 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.00042336 79.148 By MS/MS By matching 2 4 1.0969 0.90639 7.701 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81003 0.82945 0.60057 2 0 Median 1.1281 0.93029 5.0884 4 0 Median 40191000 21202000 18989000 0 0 0 0 0 0 0 0 0 0 0 0 32118000 17362000 14756000 8072700 3839800 4232800 20601 3177 21484 107996;107997;107998;107999;108000;108001 109391 109391 1 LITPAVVSER KATYDKLCKEVPNYKLITPAVVSERLKIRG VPNYKLITPAVVSERLKIRGSLARAALQEL K L I E R L 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 10 0 1083.6288 P62851 P62851 67 76 RPS25 40S ribosomal protein S25 yes yes 2 1.2123E-05 151.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 2 2 1.0925 0.954 12.929 17 Median 0.92348 0.87507 10.673 4 0 Median 1.0833 0.89975 3.8194 3 0 Median 1.0925 1.059 2.2488 3 0 Median 1.2967 0.98927 3.3286 3 0 Median 1.1252 1.1685 16.401 2 0 Median 1.2447 0.99007 6.8939 2 0 Median 776930000 381860000 395070000 431560000 217730000 213830000 189630000 91289000 98337000 95112000 44489000 50624000 41953000 19322000 22631000 13264000 6753100 6510900 5417400 2274900 3142400 20602 2600 21485 108002;108003;108004;108005;108006;108007;108008;108009;108010;108011;108012;108013;108014;108015;108016;108017;108018 109392;109393;109394;109395;109396;109397;109398;109399;109400;109401;109402;109403;109404;109405;109406;109407;109408;109409;109410;109411;109412;109413;109414;109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429;109430;109431;109432;109433;109434;109435;109436;109437;109438 109423 47 LITQTFSHHNQLAQK KTDFFIGGEEGMAEKLITQTFSHHNQLAQK LITQTFSHHNQLAQKTRREKRARQEAERRE K L I Q K T 1 0 1 0 0 3 0 0 2 1 2 1 0 1 0 1 2 0 0 0 0 0 15 0 1764.9271 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 54 68 NUDC Nuclear migration protein nudC yes no 2;3;4 7.3333E-10 100.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 10 3 2 1 6 1.3202 1.1614 40.46 33 Median 1.2495 1.1524 18.367 12 1 Median 1.4063 1.199 15.393 10 0 Median 1.4355 1.4135 4.945 3 0 Median 1.1877 1.0139 6.2392 2 0 Median 3.0067 3.0126 NaN 1 1 Median 1.3659 1.1105 87.15 5 3 Median 621810000 239280000 382530000 313500000 130260000 183240000 133840000 57867000 75969000 54499000 22268000 32231000 32101000 15130000 16971000 17739000 4505900 13233000 70137000 9253500 60883000 20603 4376 21486 108019;108020;108021;108022;108023;108024;108025;108026;108027;108028;108029;108030;108031;108032;108033;108034;108035;108036;108037;108038;108039;108040;108041;108042;108043;108044;108045;108046;108047;108048;108049;108050;108051;108052 109439;109440;109441;109442;109443;109444;109445;109446;109447;109448;109449;109450;109451;109452;109453;109454;109455;109456;109457;109458;109459;109460;109461;109462;109463;109464;109465;109466;109467;109468;109469 109453 31 LITSDKVENFHEEHEK NRIVEDDASISSCNKLITSDKVENFHEEHE ITSDKVENFHEEHEKNSHHIHKNADDSTKK K L I E K N 0 0 1 1 0 0 4 0 2 1 1 2 0 1 0 1 1 0 0 1 0 0 16 1 1953.9432 Q7Z5K2 Q7Z5K2 163 178 WAPAL Wings apart-like protein homolog yes yes 3;4 3.5625E-05 68.944 By MS/MS By MS/MS 3 4 0.919 1.0269 36.56 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89424 1.0269 46.93 3 0 Median 1.0212 0.97279 22.436 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15639000 7930900 7708100 0 0 0 0 0 0 10040000 5070700 4969500 5598900 2860200 2738700 0 0 0 0 0 0 20604 3249 21487 108053;108054;108055;108056;108057;108058;108059 109470;109471;109472;109473;109474;109475;109476 109472 7 LITSEEERSPAK ESPRASMGVLSGKRKLITSEEERSPAKRGR KRKLITSEEERSPAKRGRKSATVKPGAVGA K L I A K R 1 1 0 0 0 0 3 0 0 1 1 1 0 0 1 2 1 0 0 0 0 0 12 1 1358.7042 A6NNK5;Q12888;H7BZY0 A6NNK5 1625 1636 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 0.036728 20.463 By MS/MS 1 0.48874 0.57993 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48874 0.57993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 807640 493640 314010 0 0 0 0 0 0 807640 493640 314010 0 0 0 0 0 0 0 0 0 20605 530 21488 108060 109477 109477 1 LITSNTDASDGDSVALVK LLQAEISENQAIIQKLITSNTDASDGDSVA SNTDASDGDSVALVKETVVISPPCTGSSEH K L I V K E 2 0 1 3 0 0 0 1 0 1 2 1 0 0 0 3 2 0 0 2 0 0 18 0 1804.9054 Q14789;E7EU81;H0Y867 Q14789 1125 1142 GOLGB1 Golgin subfamily B member 1 yes no 2 2.0019E-15 165.7 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1222 1.0934 5.244 4 Median 1.1097 1.1145 NaN 1 0 Median 1.2043 1.0726 NaN 1 0 Median 1.1017 1.1911 NaN 1 0 Median 1.1349 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77989000 37113000 40877000 53340000 26177000 27163000 20078000 8824900 11253000 3817500 1777500 2040000 753970 332980 420990 0 0 0 0 0 0 20606 2900 21489 108061;108062;108063;108064 109478;109479;109480;109481;109482 109478 5 LITSVADVVNNDPMVGSK GKAAPGYHMAKMIIKLITSVADVVNNDPMV SVADVVNNDPMVGSKLKVIFLENYRVSLAE K L I S K L 1 0 2 2 0 0 0 1 0 1 1 1 1 0 1 2 1 0 0 4 0 0 18 0 1857.9506 P06737;E9PK47 P06737 623 640 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 5.7949E-06 61.375 By MS/MS By matching By matching 3 1 1 0.94923 0.91617 4.833 5 Median 0.94923 0.91617 3.6242 3 0 Median 1.0419 0.92282 NaN 1 0 Median 0.79479 0.8392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29816000 15866000 13950000 26160000 14033000 12127000 1879500 867950 1011500 1776500 964650 811830 0 0 0 0 0 0 0 0 0 20607 1874 21490 108065;108066;108067;108068;108069 109483;109484;109485;109486;109487 109484 5 LITTQQWLIK PPLLIPTSKYLINNRLITTQQWLIKLTSKQ LINNRLITTQQWLIKLTSKQMMTMHNTKGR R L I I K L 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1242.7336 P00846 P00846 42 51 MT-ATP6 ATP synthase subunit a yes yes 2 0.00035753 96.253 By MS/MS By MS/MS By MS/MS By matching 6 1 1 1 1.1226 1.0773 26.292 9 Median 1.0085 1.0055 22.674 6 0 Median 1.4171 1.2629 NaN 1 0 Median 1.2807 1.2523 NaN 1 0 Median 1.8167 1.459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107030000 44705000 62330000 81291000 37727000 43564000 22294000 5369800 16924000 3338600 1569400 1769200 110620 37889 72732 0 0 0 0 0 0 20608 1826 21491 108070;108071;108072;108073;108074;108075;108076;108077;108078 109488;109489;109490;109491;109492;109493;109494;109495 109489 8 LITYLDQTTQK YLHHVNKRLEEEADRLITYLDQTTQKSLIA EADRLITYLDQTTQKSLIATVEKQLLGEHL R L I Q K S 0 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 3 0 1 0 0 0 11 0 1322.7082 Q13620;K4DI93 Q13620 428 438 CUL4B Cullin-4B yes no 2 0.00018273 110.76 By matching By MS/MS By MS/MS 2 1 1 0.88252 0.92002 19.655 4 Median 0.81726 0.81828 13.525 2 0 Median 1.3723 1.1995 NaN 1 0 Median 0.85691 0.94005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19492000 9552400 9940000 6648600 3263900 3384700 5647000 1776400 3870600 7196800 4512100 2684700 0 0 0 0 0 0 0 0 0 20609 1358 21492 108079;108080;108081;108082 109496;109497 109496 2 LIVALMKPSR LLDDLKSELTGKFEKLIVALMKPSRLYDAY GKFEKLIVALMKPSRLYDAYELKHALKGAG K L I S R L 1 1 0 0 0 0 0 0 0 1 2 1 1 0 1 1 0 0 0 1 0 0 10 1 1126.6896 P08758;D6RBL5;E9PHT9 P08758 80 89 ANXA5 Annexin A5;Annexin yes no 2 0.00027905 133.86 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0246 1.0339 16.178 5 Median 0.99954 1.0141 2.7381 2 0 Median 0.97147 0.84989 NaN 1 0 Median 1.2261 1.3333 NaN 1 0 Median 1.1182 1.0553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159030000 80144000 78883000 102120000 51718000 50403000 49812000 24790000 25022000 6066200 3138900 2927300 1027300 496730 530530 0 0 0 0 0 0 20610 1909 21493;21494 108083;108084;108085;108086;108087 109498;109499;109500;109501;109502;109503;109504 109500 685 7 LIVAYVDDLDR KRYLVLDCVPEERRKLIVAYVDDLDRRGPP ERRKLIVAYVDDLDRRGPPPPPTASEPTRR K L I D R R 1 1 0 3 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.682 O14776 O14776 1070 1080 TCERG1 Transcription elongation regulator 1 yes yes 2 0.00017784 93.111 By MS/MS By MS/MS 1 1 1.1048 1.0679 7.9254 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0274 1.1294 NaN 1 0 Median 1.1879 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22857000 10829000 12028000 0 0 0 0 0 0 19032000 9059900 9972400 3825100 1769200 2055900 0 0 0 0 0 0 20611 1494 21495 108088;108089 109505;109506;109507;109508 109505 4 LIVAYVDDLDRR KRYLVLDCVPEERRKLIVAYVDDLDRRGPP RRKLIVAYVDDLDRRGPPPPPTASEPTRRS K L I R R G 1 2 0 3 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 2 0 0 12 1 1446.7831 O14776 O14776 1070 1081 TCERG1 Transcription elongation regulator 1 yes yes 2;3 6.935E-06 101.72 By MS/MS 2 0.88313 1.0741 8.8775 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88313 1.0741 8.8775 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42526000 21442000 21084000 0 0 0 0 0 0 42526000 21442000 21084000 0 0 0 0 0 0 0 0 0 20612 1494 21496 108090;108091 109509;109510;109511;109512 109511 4 LIVDEAINEDNSVVSLSQPK DLSTAILKQKNRPNRLIVDEAINEDNSVVS AINEDNSVVSLSQPKMDELQLFRGDTVLLK R L I P K M 1 0 2 2 0 1 2 0 0 2 2 1 0 0 1 3 0 0 0 3 0 0 20 0 2169.1165 P55072 P55072 26 45 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 5.7583E-10 86.467 By MS/MS By MS/MS 5 2 0.93104 0.8624 20.78 7 Median 0.92258 0.86162 21.173 5 0 Median 1.0954 0.97284 17.041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68728000 34328000 34400000 50013000 25103000 24910000 18715000 9225600 9489800 0 0 0 0 0 0 0 0 0 0 0 0 20613 2494 21497 108092;108093;108094;108095;108096;108097;108098 109513;109514;109515;109516;109517;109518;109519;109520;109521;109522 109517 10 LIVDHHGTAQLQALR KSSILIAMAVYTYLRLIVDHHGTAQLQALR LIVDHHGTAQLQALRQKEVDFCISLLRERF R L I L R Q 2 1 0 1 0 2 0 1 2 1 3 0 0 0 0 0 1 0 0 1 0 0 15 0 1670.9216 Q68E01;A0A096LNW8 Q68E01 216 230 INTS3 Integrator complex subunit 3 yes no 3 8.7288E-06 84.753 By MS/MS By MS/MS 1 1 1.1312 1.0759 11.978 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92805 0.98849 NaN 1 0 Median 1.3789 1.171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11528000 5077000 6450800 0 0 0 0 0 0 6480400 3145500 3334900 5047500 1931500 3115900 0 0 0 0 0 0 20614 3126 21498 108099;108100 109523;109524;109525;109526 109525 4 LIVDHNIADYMTAK MYEKIDLTLLNRLLRLIVDHNIADYMTAKN RLIVDHNIADYMTAKNNVVINYKDMNHTNS R L I A K N 2 0 1 2 0 0 0 0 1 2 1 1 1 0 0 0 1 0 1 1 0 0 14 0 1602.8076 Q6P2Q9;I3L0J9 Q6P2Q9 999 1012 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 5.3519E-12 129.84 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 5 2 4 2 1.0705 1.0944 20.625 18 Median 1.1903 1.1485 11.501 2 1 Median 1.3584 1.1936 37.381 3 0 Median 0.92661 1.018 4.8419 5 2 Median 1.3569 1.2466 2.1718 2 0 Median 1.0468 1.0966 6.3332 4 0 Median 1.0377 0.88009 4.394 2 0 Median 234360000 116330000 118030000 31882000 14559000 17323000 7397400 2522400 4875000 134940000 69598000 65344000 1372200 614530 757670 57791000 28581000 29210000 974490 457710 516780 20615 3157 21499;21500 108101;108102;108103;108104;108105;108106;108107;108108;108109;108110;108111;108112;108113;108114;108115;108116;108117;108118 109527;109528;109529;109530;109531;109532;109533;109534;109535;109536;109537;109538 109532 1674 12 LIVDPALDPALR GDGQKAPSFQWRNYKLIVDPALDPALRRPS NYKLIVDPALDPALRRPSQKVYRYDGVHFS K L I L R R 2 1 0 2 0 0 0 0 0 1 3 0 0 0 2 0 0 0 0 1 0 0 12 0 1291.75 O15047 O15047 22 33 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 2 0.0076677 38.293 By MS/MS By matching 1 1 0.65066 0.63752 5.0268 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55602 0.61526 NaN 1 0 Median 0.76141 0.66059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3928200 2409700 1518500 0 0 0 0 0 0 3820500 2352300 1468200 107630 57340 50285 0 0 0 0 0 0 20616 1516 21501 108119;108120 109539;109540 109539 2 LIVDVIR NAEMDARTILLNTKRLIVDVIRFQPGETLT TILLNTKRLIVDVIRFQPGETLTEILETPA R L I I R F 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 P46940;H0YLE8 P46940 1391 1397 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00617 94.163 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 4 2 2 1 2 1.2066 1.0512 19.804 14 Median 1.1218 1.0526 9.6357 3 0 Median 1.2094 1.034 2.671 4 0 Median 1.3157 1.431 7.2922 2 0 Median 1.1956 1.017 22.662 2 0 Median 1.5826 1.6547 NaN 1 0 Median 1.0716 0.89407 12.189 2 0 Median 60423000 26485000 33937000 33598000 15154000 18443000 20206000 8626400 11580000 3545100 1555500 1989600 454810 159580 295230 1608800 579210 1029600 1010300 410770 599550 20617 2350 21502 108121;108122;108123;108124;108125;108126;108127;108128;108129;108130;108131;108132;108133;108134 109541;109542;109543;109544;109545;109546;109547;109548;109549 109542 9 LIVELRR ARQYAGLDHELAFSRLIVELRRLHPGHVLP DHELAFSRLIVELRRLHPGHVLPDEELQWV R L I R R L 0 2 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 1 897.57599 Q99720 Q99720 61 67 SIGMAR1 Sigma non-opioid intracellular receptor 1 yes yes 2 0.057168 44.973 By matching By MS/MS By matching By matching 2 1 1 1 1.3101 1.2644 28.925 5 Median 0.88397 0.96333 38.139 2 0 Median 1.4888 1.2644 NaN 1 0 Median 1.3101 1.3583 NaN 1 0 Median 1.7611 1.5769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14118000 6024300 8093800 6842100 3159900 3682200 5551400 2162700 3388600 1232100 527550 704520 492470 174120 318350 0 0 0 0 0 0 20618 3765 21503 108135;108136;108137;108138;108139 109550 109550 1 LIVENLSSR SGRDKYGPPVRTEYRLIVENLSSRCSWQDL VRTEYRLIVENLSSRCSWQDLKDFMRQAGE R L I S R C 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 9 0 1029.5819 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247;Q13243;B4DJK0;B4DUA4 A0A590UJK4 112 120 SRSF6;SRSF5 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 5 no no 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 5 7 7 8 1.0837 1.0164 16.414 36 Median 1.0642 1.0671 10.93 5 0 Median 1.1098 0.95338 21.14 6 1 Median 1.0296 1.0831 5.768 4 0 Median 1.2034 1.0078 20.63 6 1 Median 1.0792 1.0975 10.778 7 0 Median 1.0939 0.89999 12.993 8 0 Median 759970000 360260000 399710000 146990000 67379000 79616000 109470000 50588000 58887000 81353000 39337000 42016000 102990000 47119000 55872000 265330000 131150000 134170000 53833000 24688000 29145000 20619 485;2800 21504 108140;108141;108142;108143;108144;108145;108146;108147;108148;108149;108150;108151;108152;108153;108154;108155;108156;108157;108158;108159;108160;108161;108162;108163;108164;108165;108166;108167;108168;108169;108170;108171;108172;108173;108174;108175;108176;108177 109551;109552;109553;109554;109555;109556;109557;109558;109559;109560;109561;109562;109563;109564;109565;109566;109567;109568;109569;109570;109571;109572;109573;109574;109575;109576;109577;109578;109579;109580;109581;109582;109583;109584;109585;109586;109587;109588;109589;109590;109591;109592;109593;109594;109595;109596;109597;109598;109599;109600;109601;109602;109603;109604;109605;109606;109607;109608 109554 58 LIVLVPPSKPTVNIPSSATIGNR VSEEGGNSYGEVKVKLIVLVPPSKPTVNIP KPTVNIPSSATIGNRAVLTCSEQDGSPPSE K L I N R A 1 1 2 0 0 0 0 1 0 3 2 1 0 0 4 3 2 0 0 3 0 0 23 1 2372.3791 A0A087WY82;Q9Y624 A0A087WY82 106 128 F11R Junctional adhesion molecule A yes no 3 4.5696E-20 93.006 By MS/MS By matching 3 2 0.70296 0.64955 19.684 5 Median 0.5536 0.59313 26.758 3 1 Median 0.75937 0.6934 9.2384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20801000 13620000 7181300 19865000 13064000 6801200 936280 556120 380160 0 0 0 0 0 0 0 0 0 0 0 0 20620 79 21505 108178;108179;108180;108181;108182 109609;109610 109610 2 LIVNVNDLR YQSKVRELISDNQYRLIVNVNDLRRKNEKR SDNQYRLIVNVNDLRRKNEKRANRLLNNAF R L I L R R 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1054.6135 P25205 P25205 47 55 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1214 0.96979 8.3142 5 Median 0.90378 0.86893 NaN 1 0 Median 1.2037 1.0239 7.6742 2 0 Median 0.91182 0.96225 NaN 1 0 Median 1.2026 1.0363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110650000 55117000 55530000 35186000 18126000 17060000 23445000 10724000 12721000 48398000 24724000 23675000 3618400 1543300 2075000 0 0 0 0 0 0 20621 2129 21506 108183;108184;108185;108186;108187 109611;109612;109613;109614;109615;109616;109617 109612 7 LIVNVNDLRR YQSKVRELISDNQYRLIVNVNDLRRKNEKR DNQYRLIVNVNDLRRKNEKRANRLLNNAFE R L I R R K 0 2 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 10 1 1210.7146 P25205 P25205 47 56 MCM3 DNA replication licensing factor MCM3 yes yes 2;3 9.6131E-05 109.71 By MS/MS By MS/MS By matching 4 1 2 1.0573 1.1407 14.279 7 Median 1.018 1.0865 14.249 4 0 Median NaN NaN NaN 0 0 Median 0.98719 1.1407 NaN 1 0 Median 1.399 1.2852 16.531 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52857000 27744000 25113000 45750000 24220000 21529000 0 0 0 6362800 3277500 3085300 744210 245790 498420 0 0 0 0 0 0 20622 2129 21507 108188;108189;108190;108191;108192;108193;108194 109618;109619;109620;109621;109622;109623 109619 6 LIVTGTSIQR TMFPMTDCCFSPDDKLIVTGTSIQRGCGSG SPDDKLIVTGTSIQRGCGSGKLVFFERRTF K L I Q R G 0 1 0 0 0 1 0 1 0 2 1 0 0 0 0 1 2 0 0 1 0 0 10 0 1086.6397 Q9NW82 Q9NW82 437 446 WDR70 WD repeat-containing protein 70 yes yes 2 0.00052437 73.665 By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1.2118 1.1043 29.596 6 Median 1.1536 1.1527 40.184 2 0 Median 0.79306 0.68932 NaN 1 0 Median 1.2782 1.3267 NaN 1 0 Median 1.3014 1.1043 15.454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15871000 7385200 8485900 4072000 2053200 2018800 2049900 1186500 863440 5974200 2606900 3367200 3775000 1538600 2236400 0 0 0 0 0 0 20623 4147 21508 108195;108196;108197;108198;108199;108200 109624;109625;109626;109627;109628 109625 5 LIVTQTMK ______________________________ ______________________________ - L I M K G 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 2 0 0 1 0 0 8 0 932.53649 CON__P02754 CON__P02754 1 8 yes yes 2 0.040404 55.676 By MS/MS 1 0.24243 0.2005 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24243 0.2005 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1469700 1093300 376380 0 0 0 0 0 0 0 0 0 1469700 1093300 376380 0 0 0 0 0 0 + 20624 745 21509 108201 109629 109629 1 LIVTSATLDAVK FGLLKKTVQKRQDMKLIVTSATLDAVKFSQ DMKLIVTSATLDAVKFSQYFYEAPIFTIPG K L I V K F 2 0 0 1 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 2 0 0 12 0 1229.7231 F5H658;Q14562 F5H658 713 724 DHX8 ATP-dependent RNA helicase DHX8 yes no 2 0.00062698 65.347 By MS/MS By matching By matching 1 1 1 1.3172 1.3936 49.302 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.042 1.1285 NaN 1 0 Median 2.95 2.888 NaN 1 0 Median 1.3172 1.3936 NaN 1 0 Median NaN NaN NaN 0 0 Median 8580200 3591600 4988600 0 0 0 0 0 0 5227300 2546600 2680600 1586400 314680 1271700 1766500 730230 1036300 0 0 0 20625 1040 21510 108202;108203;108204 109630;109631 109630 2 LIVTSATMDAEK FGLLREVVARRSDLKLIVTSATMDAEKFAA DLKLIVTSATMDAEKFAAFFGNVPIFHIPG K L I E K F 2 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 2 0 0 1 0 0 12 0 1277.6537 Q92620;J3KTG2 Q92620 680 691 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes no 2 2.5339E-05 96.89 By MS/MS By MS/MS By MS/MS 2 1 1 1.218 1.1798 19.42 4 Median 1.4364 1.3917 24.101 2 1 Median NaN NaN NaN 0 0 Median 1.1093 1.186 NaN 1 1 Median 1.2314 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21083000 8702500 12380000 9138800 3101700 6037100 0 0 0 9186500 4303200 4883300 2757700 1297700 1460000 0 0 0 0 0 0 20626 3546 21511 108205;108206;108207;108208 109632;109633;109634 109634 3 LIVVLEGASLETVK KRPRLGAGNKIGGRRLIVVLEGASLETVKV RLIVVLEGASLETVKVGKTYELLNCDKHKS R L I V K V 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 1 0 0 3 0 0 14 0 1469.8705 Q92979;V9GYP5;A0A087WWQ2 Q92979 43 56 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.020319 27.115 By MS/MS 1 1.3591 1.1405 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3591 1.1405 NaN 1 0 Median 2362400 990660 1371700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2362400 990660 1371700 20627 3571 21512 108209 109635 109635 1 LIWDSLEER ESDKHTVQDPLMELKLIWDSLEERIINRQH PLMELKLIWDSLEERIINRQHKLEGALLAL K L I E R I 0 1 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 9 0 1159.5873 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4270 4278 DST Dystonin yes no 2 0.0091518 49.418 By MS/MS 1 1.0304 1.1354 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0304 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2761700 1315000 1446700 0 0 0 0 0 0 2761700 1315000 1446700 0 0 0 0 0 0 0 0 0 20628 934 21513 108210 109636;109637 109636 2 LIWLPLR DTADLLGGYKPVDHKLIWLPLREAFEELFA GYKPVDHKLIWLPLREAFEELFAQTFSKKQ K L I L R E 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 0 0 1 0 0 0 0 7 0 909.58001 Q9NU22;Q5T795 Q9NU22 723 729 MDN1 Midasin yes no 2 0.035995 47.045 By matching By matching By MS/MS By matching 1 1 2 2 1.038 1.0132 16.216 6 Median 1.2426 1.2192 NaN 1 0 Median 0.87627 0.75481 NaN 1 0 Median 0.96484 1.0499 7.1112 2 0 Median 1.136 0.98884 5.5142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8826200 4605000 4221200 284080 133910 150170 748910 376380 372530 7543900 3979700 3564200 249300 114970 134340 0 0 0 0 0 0 20629 4112 21514 108211;108212;108213;108214;108215;108216 109638;109639 109639 2 LIYFQLHR ALESDNNTALLLSKKLIYFQLHRALKMIVD ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K L I H R A 0 1 0 0 0 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 0 8 0 1088.6131 Q13263 Q13263 367 374 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0023313 133.99 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.4452 1.2353 53.423 5 Median 2.0071 1.9289 95.938 2 0 Median 1.5264 1.3049 NaN 1 0 Median 1.1656 1.2353 NaN 1 0 Median 1.4452 1.2352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41012000 19163000 21848000 20978000 9679200 11299000 2684300 1236800 1447500 16708000 8000700 8706900 641920 246570 395350 0 0 0 0 0 0 20630 2802 21515 108217;108218;108219;108220;108221 109640;109641;109642;109643;109644 109643 5 LIYNTHMADEK GHIDQFLIATFMQLRLIYNTHMADEKLEKD MQLRLIYNTHMADEKLEKDEIIKLYSCIIG R L I E K L 1 0 1 1 0 0 1 0 1 1 1 1 1 0 0 0 1 0 1 0 0 0 11 0 1333.6336 Q14008;H0YCF6;H0YEK7 Q14008 1594 1604 CKAP5 Cytoskeleton-associated protein 5 yes no 3 0.00051136 56.551 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 0.93019 0.85665 27.802 6 Median 0.87152 0.82114 NaN 1 0 Median 0.74711 0.66144 NaN 1 0 Median 1.1038 1.2195 NaN 1 0 Median 0.79532 0.69954 34.639 2 0 Median NaN NaN NaN 0 0 Median 1.0969 0.91651 NaN 1 0 Median 20541000 9570300 10971000 1883100 856330 1026700 658200 386870 271330 10206000 4626400 5579200 7321900 3497700 3824200 0 0 0 472200 202960 269240 20631 2850 21516 108222;108223;108224;108225;108226;108227 109645;109646;109647;109648;109649 109648 5 LIYPVGFWR TVDSILQTDDATLGKLIYPVGFWRSKVKYI DATLGKLIYPVGFWRSKVKYIKQTSAILQQ K L I W R S 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0 0 9 0 1149.6335 A0A494BZZ6;P78549;H3BRL9 A0A494BZZ6 70 78 NTHL1 Endonuclease III-like protein 1 yes no 2 0.019166 40.103 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.0354 1 16.501 5 Median 1.0354 1 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71716 0.70896 NaN 1 0 Median 1.2651 1.0644 NaN 1 0 Median 0.99312 1.0393 NaN 1 0 Median 1.1074 0.93984 NaN 1 0 Median 7083700 3860500 3223200 938580 435160 503420 0 0 0 3786300 2270700 1515500 302920 140110 162800 743850 396290 347560 1312100 618250 693870 20632 454 21517 108228;108229;108230;108231;108232 109650;109651;109652 109652 3 LIYQWVSR SSFLIMWRRPEEWGKLIYQWVSRSGQNNSV RPEEWGKLIYQWVSRSGQNNSVFTLYELTN K L I S R S 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 1 0 0 8 0 1063.5815 Q9BRG1;K7ENE3 Q9BRG1 110 117 VPS25 Vacuolar protein-sorting-associated protein 25 yes no 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.7643 1.4933 25.059 5 Median 1.6059 1.5694 10.379 2 0 Median 2.6088 2.1647 NaN 1 1 Median 1.1292 1.0848 NaN 1 0 Median 1.807 1.4933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47030000 19129000 27900000 27907000 10469000 17438000 3098000 932420 2165600 14851000 7311600 7539900 1173200 415820 757420 0 0 0 0 0 0 20633 3795 21518 108233;108234;108235;108236;108237 109653;109654;109655;109656;109657 109654 5 LIYTGNMAR VRFLNTPSDKSEDGRLIYTGNMARAVFGVK KSEDGRLIYTGNMARAVFGVKCFSYSTSLI R L I A R A 1 1 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 9 0 1037.5328 Q9BUB7;D4PHA6 Q9BUB7 94 102 TMEM70 Transmembrane protein 70, mitochondrial yes no 2 0.00059517 111.01 By MS/MS By MS/MS 1 1 1.1894 1.0707 4.2271 2 Median 1.0636 1.0392 NaN 1 0 Median 1.3301 1.1032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13413000 6142600 7270500 7945700 3804000 4141700 5467400 2338700 3128700 0 0 0 0 0 0 0 0 0 0 0 0 20634 3837 21519 108238;108239 109658;109659 109658 2 LKAADIDQEVKER ATPYIKDLFTCTIKRLKAADIDQEVKERAI KRLKAADIDQEVKERAISCMGQIICNLGDN R L K E R A 2 1 0 2 0 1 2 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 13 2 1513.81 Q86VP6 Q86VP6 576 588 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 0.00072131 48.704 By MS/MS By MS/MS 1 1 0.88078 1.0024 18.056 2 Median 0.77617 0.88223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99948 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6180800 2914100 3266700 2354900 1063800 1291100 0 0 0 3825900 1850300 1975600 0 0 0 0 0 0 0 0 0 20635 3288 21520 108240;108241 109660;109661 109660 2 LKAAEEIGIK QVGNRDDSNLYINVKLKAAEEIGIKATHIK YINVKLKAAEEIGIKATHIKLPRTTTESEV K L K I K A 2 0 0 0 0 0 2 1 0 2 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1070.6336 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 57 66 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0017845 80.688 By MS/MS By matching 1 1 0.94937 0.90387 22.035 2 Median 1.0102 1.0563 NaN 1 0 Median 0.89221 0.77346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16145000 7695000 8450300 15406000 7341400 8064800 739050 353590 385470 0 0 0 0 0 0 0 0 0 0 0 0 20636 1968 21521 108242;108243 109662;109663 109663 2 LKAEAELLQQQK KMLKEKMQAVQEATRLKAEAELLQQQKELA ATRLKAEAELLQQQKELAQEQARRLQEDKE R L K Q K E 2 0 0 0 0 3 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1397.7878 Q15149 Q15149 2462 2473 PLEC Plectin yes yes 2;3 1.17E-09 180.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 2 4 1.4172 1.4317 23.512 16 Median 1.131 1.2307 4.697 2 0 Median 1.4954 1.4426 14.237 4 0 Median 1.1537 1.3072 1.8988 2 0 Median 1.4971 1.521 4.4207 2 0 Median 1.4082 1.5249 9.2929 2 1 Median 1.9372 1.7408 42.519 4 1 Median 375470000 159130000 216340000 83847000 38780000 45067000 167740000 68807000 98934000 30156000 13990000 16166000 14308000 5768400 8539800 32683000 13275000 19409000 46735000 18515000 28220000 20637 2933 21522 108244;108245;108246;108247;108248;108249;108250;108251;108252;108253;108254;108255;108256;108257;108258;108259 109664;109665;109666;109667;109668;109669;109670;109671;109672;109673;109674;109675;109676;109677;109678;109679;109680;109681;109682;109683;109684;109685;109686 109675 23 LKAEFQEEAK EAAKTIQDKNKEIERLKAEFQEEAKRRWEY KEIERLKAEFQEEAKRRWEYENELSKVRNN R L K A K R 2 0 0 0 0 1 3 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 10 1 1191.6136 P15924 P15924 1330 1339 DSP Desmoplakin yes yes 2 0.047378 64.654 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 0.9263 0.95275 18.237 6 Median 0.89172 0.9648 NaN 1 0 Median 0.96223 0.94086 NaN 1 0 Median 0.68553 0.7791 NaN 1 0 Median 0.71875 0.73021 NaN 1 0 Median 0.9847 1.0553 NaN 1 0 Median 1.3138 1.1857 NaN 1 0 Median 10947000 5580600 5366400 2384100 1282400 1101700 687400 321660 365740 460180 279910 180270 593980 292400 301570 4730800 2527800 2202900 2090600 876420 1214100 20638 2021 21523 108260;108261;108262;108263;108264;108265 109687 109687 0 LKAEFQEEAKR EAAKTIQDKNKEIERLKAEFQEEAKRRWEY EIERLKAEFQEEAKRRWEYENELSKVRNNY R L K K R R 2 1 0 0 0 1 3 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 11 2 1347.7147 P15924 P15924 1330 1340 DSP Desmoplakin yes yes 3 0.00014385 69.672 By MS/MS By matching By matching By matching By MS/MS By MS/MS 2 2 2 2 1 2 0.87998 0.97887 19.385 11 Median 0.81459 0.87369 11.198 2 0 Median 1.0507 1.1577 20.327 2 0 Median 0.64142 0.8493 20.08 2 0 Median 0.86833 0.94777 5.8907 2 0 Median 0.62813 0.73844 NaN 1 0 Median 1.165 1.1561 14.835 2 0 Median 11481000 5883000 5597500 1649600 855840 793760 3761900 1816400 1945500 864600 523430 341170 681280 361510 319770 1961100 1161400 799710 2562000 1164400 1397600 20639 2021 21524 108266;108267;108268;108269;108270;108271;108272;108273;108274;108275;108276 109688;109689;109690;109691;109692;109693;109694 109692 7 LKAEGSEIR HCKALAPEYAKAAGKLKAEGSEIRLAKVDA AKAAGKLKAEGSEIRLAKVDATEESDLAQQ K L K I R L 1 1 0 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 1 1001.5506 P07237;H7BZ94;I3L0S0;I3NI03;I3L3U6;I3L514 P07237 70 78 P4HB Protein disulfide-isomerase yes no 2 0.021394 60.436 By matching By MS/MS By matching By matching By matching By matching 4 3 1 1 1 1 1.2334 1.2385 26.96 11 Median 1.1769 1.1789 5.9211 4 0 Median 1.3068 1.2496 18.389 3 0 Median 1.2687 1.3039 NaN 1 0 Median 1.1267 0.99737 NaN 1 0 Median 2.5485 2.6615 NaN 1 0 Median 1.2526 1.1449 NaN 1 0 Median 20489000 8256900 12232000 9561500 4168300 5393200 7947800 2860600 5087100 2151100 915710 1235400 372320 163090 209220 317410 96525 220880 138610 52660 85946 20640 1883 21525 108277;108278;108279;108280;108281;108282;108283;108284;108285;108286;108287 109695;109696 109695 2 LKAEPAAPPAAPSTPAPPPAVPK KLKRLDEKFGAPDKRLKAEPAAPPAAPSTP PAAPSTPAPPPAVPKELPAPPAPPPASAPT R L K P K E 7 0 0 0 0 0 1 0 0 0 1 2 0 0 9 1 1 0 0 1 0 0 23 1 2174.2099 P48634 P48634 504 526 PRRC2A Protein PRRC2A yes yes 3 1.3696E-07 42.454 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.34147 0.34857 24.474 4 Median 0.2563 0.24639 NaN 1 1 Median 0.4123 0.39922 NaN 1 0 Median 0.35811 0.41455 NaN 1 0 Median 0.32561 0.30434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28470000 20964000 7505900 13207000 10230000 2977300 2595900 1780900 815060 11503000 8064900 3438500 1164100 888940 275140 0 0 0 0 0 0 20641 2363 21526 108288;108289;108290;108291 109697;109698;109699;109700 109698 4 LKAFLASPEYVNLPINGNGK PLLSAYVGRLSARPKLKAFLASPEYVNLPI ASPEYVNLPINGNGKQ______________ K L K G K Q 2 0 3 0 0 0 1 2 0 1 3 2 0 1 2 1 0 0 1 1 0 0 20 1 2144.163 P09211;A8MX94 P09211 190 209 GSTP1 Glutathione S-transferase P yes no 3 0.00050842 30.094 By MS/MS By matching 2 1 0.96106 0.99908 25.93 3 Median 0.88916 0.91454 12.504 2 0 Median 1.457 1.395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9376700 4406500 4970200 8533000 4066600 4466500 843640 339960 503690 0 0 0 0 0 0 0 0 0 0 0 0 20642 1912 21527 108292;108293;108294 109701;109702 109701 2 LKAFLASPEYVNLPINGNGKQ PLLSAYVGRLSARPKLKAFLASPEYVNLPI SPEYVNLPINGNGKQ_______________ K L K K Q - 2 0 3 0 0 1 1 2 0 1 3 2 0 1 2 1 0 0 1 1 0 0 21 2 2272.2216 P09211;A8MX94 P09211 190 210 GSTP1 Glutathione S-transferase P yes no 3 0.0036864 25.207 By MS/MS 1 0.73139 0.74445 NaN 1 Median 0.73139 0.74445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4428400 2398800 2029600 4428400 2398800 2029600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20643 1912 21528 108295 109703;109704 109704 2 LKAQTYELQESNVQLK NFEDYESSHFCPNVKLKAQTYELQESNVQL KAQTYELQESNVQLKLTIVNTVGFGDQINK K L K L K L 1 0 1 0 0 3 2 0 0 0 3 2 0 0 0 1 1 0 1 1 0 0 16 1 1891.0051 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 105 120 SEPT10 Septin-10 yes no 3 0.0087029 35.089 By MS/MS 1 0.89935 0.85422 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89935 0.85422 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6468600 4252100 2216500 0 0 0 0 0 0 0 0 0 6468600 4252100 2216500 0 0 0 0 0 0 20644 626 21529 108296 109705 109705 1 LKATVTPSPVK KSKPERKEKKMPKPRLKATVTPSPVKGKGK PKPRLKATVTPSPVKGKGKVGRPTASKASK R L K V K G 1 0 0 0 0 0 0 0 0 0 1 2 0 0 2 1 2 0 0 2 0 0 11 1 1139.6914 Q9H1E3 Q9H1E3 174 184 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 2 0.0016887 71.349 By matching By matching By MS/MS By MS/MS By matching 1 1 2 1 1 0.80464 0.71867 16.105 6 Median 0.73466 0.6875 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50629 0.53277 NaN 1 0 Median 0.92005 0.81355 5.1856 2 0 Median 0.63363 0.66828 NaN 1 0 Median 0.88128 0.75126 NaN 1 0 Median 12115000 6976800 5137900 752330 457480 294850 0 0 0 1188400 720200 468220 2826800 1401100 1425800 5998300 3738500 2259900 1348800 659600 689180 20645 3935 21530 108297;108298;108299;108300;108301;108302 109706;109707;109708;109709 109707 4 LKAVQAQGGESQQEAQR KLADSDQASKVQQQKLKAVQAQGGESQQEA AVQAQGGESQQEAQRLQAQLNELQAQLSQK K L K Q R L 3 1 0 0 0 5 2 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 17 1 1826.9235 A0A087WY61;K4DIE0;Q14980 Q14980 1572 1588 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.0074823 24.793 By matching By MS/MS By MS/MS 1 1 1 0.86818 0.95701 5.5664 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86818 1.0319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84541 0.95701 NaN 1 0 Median 1.042 0.92563 NaN 1 0 Median 5493500 3133600 2359900 0 0 0 0 0 0 1424300 731350 692940 0 0 0 3139600 1952300 1187300 929640 450000 479650 20646 2905;77 21531 108303;108304;108305 109710;109711;109712 109710 3 LKAYEDQTKPVLEYYQK LIQREDDKPETVIKRLKAYEDQTKPVLEYY AYEDQTKPVLEYYQKKGVLETFSGTETNKI R L K Q K K 1 0 0 1 0 2 2 0 0 0 2 3 0 0 1 0 1 0 3 1 0 0 17 2 2115.0888 Q9UIJ7 Q9UIJ7 173 189 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 3 0.00068826 36.127 By MS/MS By MS/MS 1 1 0.75676 0.76931 15.667 2 Median 0.65207 0.68864 NaN 1 0 Median 0.87826 0.85943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21730000 13358000 8372500 18791000 11728000 7062800 2939400 1629700 1309700 0 0 0 0 0 0 0 0 0 0 0 0 20647 4291 21532 108306;108307 109713;109714;109715 109714 3 LKDDEVAQLK CILNARGLTSVINQKLKDDEVAQLKKSADT VINQKLKDDEVAQLKKSADTLWDIQKDLKD K L K L K K 1 0 0 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1157.6292 P07195 P07195 309 318 LDHB L-lactate dehydrogenase B chain yes yes 2 0.00012237 144.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1654 1.1316 23.074 5 Median 1.1654 1.1316 NaN 1 0 Median 1.1229 1.0102 NaN 1 0 Median 1.129 1.1815 NaN 1 0 Median 1.1694 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0845 1.7798 NaN 1 0 Median 88783000 40906000 47877000 15108000 7164700 7943000 60544000 27773000 32772000 5678600 2779700 2898900 6724100 3054400 3669700 0 0 0 728070 133980 594090 20648 1880 21533 108308;108309;108310;108311;108312 109716;109717;109718;109719;109720 109719 5 LKDDEVAQLKK CILNARGLTSVINQKLKDDEVAQLKKSADT INQKLKDDEVAQLKKSADTLWDIQKDLKDL K L K K K S 1 0 0 2 0 1 1 0 0 0 2 3 0 0 0 0 0 0 0 1 0 0 11 2 1285.7242 P07195 P07195 309 319 LDHB L-lactate dehydrogenase B chain yes yes 2;3 3.6723E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 11 6 5 3 2 2 1.0659 1.1372 16.003 28 Median 1.0492 1.1533 16.148 11 0 Median 1.1095 1.0897 12.09 6 0 Median 0.99904 1.0997 23.399 5 0 Median 1.1235 1.0635 8.7441 3 0 Median 1.0985 1.2019 NaN 1 0 Median 1.1596 1.091 28.675 2 0 Median 234310000 109440000 124860000 84384000 39649000 44735000 114730000 53750000 60977000 15830000 7422500 8407400 16317000 7319300 8997700 1947100 803740 1143400 1099800 498100 601680 20649 1880 21534 108313;108314;108315;108316;108317;108318;108319;108320;108321;108322;108323;108324;108325;108326;108327;108328;108329;108330;108331;108332;108333;108334;108335;108336;108337;108338;108339;108340;108341 109721;109722;109723;109724;109725;109726;109727;109728;109729;109730;109731;109732;109733;109734;109735;109736;109737;109738;109739;109740 109733 20 LKDEEISAAAIK ELNNKLKDVQEQLSRLKDEEISAAAIKAQF LSRLKDEEISAAAIKAQFEKQLLTERTLKT R L K I K A 3 0 0 1 0 0 2 0 0 2 1 2 0 0 0 1 0 0 0 0 0 0 12 1 1286.7082 O75116;E9PF63;Q14DU5 O75116 1006 1017 ROCK2 Rho-associated protein kinase 2 yes no 2;3 0.004702 58.37 By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 0.95013 0.94749 17.727 8 Median 0.89293 0.88663 1.2558 2 0 Median 1.0931 1.0592 7.6273 2 0 Median 0.98309 1.1251 2.231 2 0 Median 0.82144 0.76687 17.706 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21297000 11518000 9779500 7838500 4311200 3527200 4890400 2387300 2503100 6578500 3771900 2806600 1989700 1047100 942630 0 0 0 0 0 0 20650 1644 21535 108342;108343;108344;108345;108346;108347;108348;108349 109741;109742;109743;109744;109745;109746;109747;109748 109743 8 LKDGSTMLIEAAK VVELLLAHGADPTHRLKDGSTMLIEAAKGG HRLKDGSTMLIEAAKGGHTSVVCYLLDYPN R L K A K G 2 0 0 1 0 0 1 1 0 1 2 2 1 0 0 1 1 0 0 0 0 0 13 1 1375.7381 H0YM23;O75179;H7C2F5;H3BLS9;A0A1W2PQ15;Q8IWZ3;E9PDP5 H0YM23 579 591 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.018175 42.788 By MS/MS 1 1.0644 1.0409 NaN 1 Median 1.0644 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6685100 3103600 3581500 6685100 3103600 3581500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20651 1197;3329 21536 108350 109749 109749 1 LKDGVLAYAR VPVQGFFKKAGATFRLKDGVLAYARLSHLS GATFRLKDGVLAYARLSHLSDSKNVFNPEA R L K A R L 2 1 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 1 1104.6291 Q14690;A0A3B3IUD7 Q14690 386 395 PDCD11 Protein RRP5 homolog yes no 2 0.001927 106.6 By MS/MS By MS/MS 1 1 0.96046 1.1191 29.236 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1485 1.3761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80319 0.91012 NaN 1 0 Median NaN NaN NaN 0 0 Median 30817000 15033000 15784000 0 0 0 0 0 0 23618000 11520000 12098000 0 0 0 7199000 3512700 3686400 0 0 0 20652 448 21537 108351;108352 109750;109751;109752 109750 3 LKDISTLEPLK EKLPNLTHLNLSGNKLKDISTLEPLKKLEC SGNKLKDISTLEPLKKLECLKSLDLFNCEV K L K L K K 0 0 0 1 0 0 1 0 0 1 3 2 0 0 1 1 1 0 0 0 0 0 11 1 1255.7388 Q92688 Q92688 100 110 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2;3 0.00080704 112.13 By MS/MS By MS/MS By MS/MS By matching By matching 8 7 5 4 3 0.9516 0.91814 12.07 27 Median 0.89916 0.88632 11.455 8 0 Median 1.037 0.93428 9.1209 7 0 Median 0.88223 0.91127 11.126 5 0 Median 1.2022 1.0598 21.828 4 0 Median 0.84564 0.88857 7.3803 3 0 Median NaN NaN NaN 0 0 Median 204660000 102400000 102250000 136850000 68666000 68182000 28354000 14048000 14306000 24671000 12060000 12612000 12323000 6303000 6020200 2459200 1325400 1133800 0 0 0 20653 3549 21538 108353;108354;108355;108356;108357;108358;108359;108360;108361;108362;108363;108364;108365;108366;108367;108368;108369;108370;108371;108372;108373;108374;108375;108376;108377;108378;108379 109753;109754;109755;109756;109757;109758;109759;109760;109761;109762;109763;109764;109765;109766;109767;109768;109769;109770 109753 18 LKDISTLEPLKK EKLPNLTHLNLSGNKLKDISTLEPLKKLEC GNKLKDISTLEPLKKLECLKSLDLFNCEVT K L K K K L 0 0 0 1 0 0 1 0 0 1 3 3 0 0 1 1 1 0 0 0 0 0 12 2 1383.8337 Q92688 Q92688 100 111 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2;3 9.2738E-05 96.604 By MS/MS By MS/MS By matching By matching 6 4 3 2 0.95124 0.97632 23.145 15 Median 0.83941 0.87685 20.319 6 1 Median 1.1245 1.1087 18.265 4 0 Median 0.71014 0.80128 30.096 3 0 Median 0.98284 0.90372 7.7364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159480000 79983000 79496000 106900000 53259000 53640000 30454000 14673000 15782000 15348000 8845000 6503200 6777900 3206500 3571400 0 0 0 0 0 0 20654 3549 21539 108380;108381;108382;108383;108384;108385;108386;108387;108388;108389;108390;108391;108392;108393;108394 109771;109772;109773;109774;109775;109776;109777;109778;109779 109776 9 LKDKNTLFTR QVSTNKLTFMDLELKLKDKNTLFTRILNGQ DLELKLKDKNTLFTRILNGQEQRMKIDREF K L K T R I 0 1 1 1 0 0 0 0 0 0 2 2 0 1 0 0 2 0 0 0 0 0 10 2 1234.7034 A6NHR9;J3KTL8;J3KRK8 A6NHR9 535 544 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0020444 49.35 By MS/MS By matching By matching 1 1 1 0.90544 1.1962 29.968 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90544 1.1962 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6231 0.73252 NaN 1 0 Median 1.3143 1.2615 NaN 1 0 Median 3920700 1991200 1929500 0 0 0 0 0 0 2360000 1278300 1081700 0 0 0 1054300 511790 542490 506430 201130 305300 20655 518 21540 108395;108396;108397 109780;109781 109781 2 LKDLAFLK ______________________________ DKDSLPKLKDLAFLKNQLESLQRRVEDEVN K L K L K N 1 0 0 1 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 0 0 0 8 1 946.58515 L0R6Q1 L0R6Q1 11 18 SLC35A4 yes yes 2 0.028207 73.248 By MS/MS 1 1.3412 1.1627 NaN 1 Median NaN NaN NaN 0 0 Median 1.3412 1.1627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21402000 9278300 12124000 0 0 0 21402000 9278300 12124000 0 0 0 0 0 0 0 0 0 0 0 0 20656 1404 21541 108398 109782 109782 1 LKDLDLDAFAEELER NPAGALEEILENPERLKDLDLDAFAEELER LKDLDLDAFAEELERQGYGDKHITLYDIRA R L K E R Q 2 1 0 3 0 0 3 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 15 1 1775.8941 Q7KZ85 Q7KZ85 1099 1113 SUPT6H Transcription elongation factor SPT6 yes yes 3 1.886E-07 83.54 By MS/MS 1 0.29878 0.27785 NaN 1 Median NaN NaN NaN 0 0 Median 0.29878 0.27785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29062000 22977000 6085400 0 0 0 29062000 22977000 6085400 0 0 0 0 0 0 0 0 0 0 0 0 20657 3213 21542 108399 109783 109783 1 LKDLEALLNSK RNTKKEGDLIAAQARLKDLEALLNSKEAAL AQARLKDLEALLNSKEAALSTALSEKRTLE R L K S K E 1 0 1 1 0 0 1 0 0 0 4 2 0 0 0 1 0 0 0 0 0 0 11 1 1242.7184 P02545;H0YAB0;Q3BDU5 P02545 134 144 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 0.00077931 106.4 By MS/MS By MS/MS By MS/MS By matching 5 6 10 5 1.1436 1.2079 26.259 26 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1405 1.2379 13.59 5 0 Median 1.6341 1.552 48.863 6 0 Median 1.1061 1.1996 6.6918 10 0 Median 1.3987 1.1909 22.556 5 0 Median 389620000 176880000 212740000 0 0 0 0 0 0 124740000 58551000 66193000 23428000 9137900 14291000 196790000 91109000 105680000 44660000 18081000 26579000 20658 1834;3010 21543 108400;108401;108402;108403;108404;108405;108406;108407;108408;108409;108410;108411;108412;108413;108414;108415;108416;108417;108418;108419;108420;108421;108422;108423;108424;108425 109784;109785;109786;109787;109788;109789;109790;109791;109792;109793;109794;109795;109796;109797;109798;109799;109800;109801;109802;109803;109804;109805;109806;109807;109808;109809 109803 26 LKDLFGK NVYIKNFGEDMDDERLKDLFGKFGPALSVK GEDMDDERLKDLFGKFGPALSVKVMTDESG R L K G K F 0 0 0 1 0 0 0 1 0 0 2 2 0 1 0 0 0 0 0 0 0 0 7 1 819.48544 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YBN4;H0YAP2 P11940 207 213 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 0.043007 84.699 By matching By MS/MS 1 2 1.0909 0.85791 11.021 3 Plateau 0.89064 0.84884 NaN 1 0 Median 0.99161 0.94122 13.107 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14824000 7501400 7322200 1819700 913330 906390 13004000 6588100 6415800 0 0 0 0 0 0 0 0 0 0 0 0 20659 1973 21544 108426;108427;108428 109810 109810 1 LKDLGNLVLRPFGLSTENFQIK IEERNERLKEEMLGKLKDLGNLVLRPFGLS VLRPFGLSTENFQIKQDSSTGSYSINFVQN K L K I K Q 0 1 2 1 0 1 1 2 0 1 5 2 0 2 1 1 1 0 0 1 0 0 22 2 2501.4006 Q99614;H0YB37 Q99614 251 272 TTC1 Tetratricopeptide repeat protein 1 yes no 3 0.029317 13.731 By matching By MS/MS 1 2 1.041 1.2443 12.531 3 Median 1.2465 1.3198 NaN 1 0 Median 1.0176 1.1363 12.835 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473200 1038200 1435000 285060 143980 141080 2188200 894210 1294000 0 0 0 0 0 0 0 0 0 0 0 0 20660 3758 21545 108429;108430;108431 109811 109811 1 LKDLNSQADSLMTSSAFDTSQVK KHQLLEADISAHEDRLKDLNSQADSLMTSS DSLMTSSAFDTSQVKDKRDTINGRFQKIKS R L K V K D 2 0 1 3 0 2 0 0 0 0 3 2 1 1 0 5 2 0 0 1 0 0 23 1 2485.2006 A0A0D9SF54;Q13813 Q13813 1714 1736 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 5.46E-35 126.97 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 3 3 2 1.1102 1.1455 16.317 13 Median 1.3001 1.3292 21.029 2 0 Median 1.3532 1.2881 7.2517 3 0 Median 0.93537 1.0885 22.049 3 0 Median 1.1306 1.0939 7.7003 3 0 Plateau 0.96635 1.0369 1.8317 2 0 Median NaN NaN NaN 0 0 Median 154890000 75766000 79125000 24290000 10835000 13455000 10333000 4246700 6086000 103610000 52602000 51004000 5447700 2404400 3043200 11214000 5677900 5536500 0 0 0 20661 264;2838 21546;21547 108432;108433;108434;108435;108436;108437;108438;108439;108440;108441;108442;108443;108444 109812;109813;109814;109815;109816;109817;109818;109819;109820;109821;109822;109823 109816 119 12 LKDLYIRPNIAQK KQDSLVINLNRSNPKLKDLYIRPNIAQKRM PKLKDLYIRPNIAQKRMQGSLEAHVNGFRF K L K Q K R 1 1 1 1 0 1 0 0 0 2 2 2 0 0 1 0 0 0 1 0 0 0 13 2 1570.9195 Q9Y5B9 Q9Y5B9 662 674 SUPT16H FACT complex subunit SPT16 yes yes 3 0.00015984 72.29 By MS/MS By matching By matching By MS/MS By matching 2 2 1 2 3 0.92819 1.0925 24.414 10 Median 0.70752 0.78689 0.30088 2 0 Median NaN NaN NaN 0 0 Median 0.93545 1.1503 0.50502 2 0 Median 1.335 1.5215 NaN 1 0 Median 0.92819 1.0925 1.9675 2 0 Median 0.94287 0.87828 31.781 3 0 Median 47463000 25719000 21744000 9414800 5652600 3762300 0 0 0 12346000 6573300 5773200 528740 210110 318630 17136000 9361200 7775000 8036500 3921700 4114800 20662 4456 21548 108445;108446;108447;108448;108449;108450;108451;108452;108453;108454 109824;109825 109824 2 LKDPANFQYPAESVLAYK MNFNPIISRKDITGKLKDPANFQYPAESVL PANFQYPAESVLAYKEGHLSPDIVAEQKKL K L K Y K E 3 0 1 1 0 1 1 0 0 0 2 2 0 1 2 1 0 0 2 1 0 0 18 1 2053.052 B4DLR8;H3BRK3;P15559;H3BNV2 B4DLR8 60 77 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 3 0.0012429 29.092 By MS/MS By matching 1 2 0.95765 0.9263 55.373 3 Plateau 0.99929 0.97437 NaN 1 0 Median 0.41108 0.37398 4.3815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8015100 4047700 3967400 6195000 2823600 3371400 1820100 1224100 596050 0 0 0 0 0 0 0 0 0 0 0 0 20663 599 21549 108455;108456;108457 109826;109827 109826 2 LKDPEKGPVPTFQPFQR TKNSGFKRSRTLEGKLKDPEKGPVPTFQPF DPEKGPVPTFQPFQRSISADDDLQESSRRP K L K Q R S 0 1 0 1 0 2 1 1 0 0 1 2 0 2 4 0 1 0 0 1 0 0 17 2 1983.0578 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 96 112 NELFE Negative elongation factor E yes no 3 7.2803E-06 68.173 By matching By MS/MS By matching 1 1 1 0.39343 0.45646 24.504 3 Median 0.56043 0.62623 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39343 0.45646 NaN 1 0 Median 0.3541 0.38659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9779800 6394400 3385400 2416600 1260400 1156200 0 0 0 5123600 3579800 1543800 2239600 1554100 685420 0 0 0 0 0 0 20664 2059 21550 108458;108459;108460 109828 109828 1 LKDQNIFVSR DMAKRERFELLKHQKLKDQNIFVSRTRLCL LKHQKLKDQNIFVSRTRLCLHNLPKAVDDK K L K S R T 0 1 1 1 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1218.6721 Q9NW13 Q9NW13 477 486 RBM28 RNA-binding protein 28 yes yes 2;3 0.0013989 70.908 By matching By matching By MS/MS By MS/MS 2 2 4 6 1.122 1.1173 20.422 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0126 1.1173 0.87252 2 0 Median 1.3164 1.1968 16.98 2 0 Median 1.0853 1.1938 11.601 4 0 Median 1.1747 1.0068 28.165 6 1 Median 74319000 35309000 39010000 0 0 0 0 0 0 24859000 12172000 12687000 2584100 1193900 1390200 35416000 17172000 18244000 11460000 4770600 6689000 20665 4145 21551 108461;108462;108463;108464;108465;108466;108467;108468;108469;108470;108471;108472;108473;108474 109829;109830;109831;109832 109829 4 LKDRDPEFYK RRKGRASEHKDQLSRLKDRDPEFYKFLQEN DQLSRLKDRDPEFYKFLQENDQSLLNFSDS R L K Y K F 0 1 0 2 0 0 1 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 10 2 1309.6667 Q9Y3T9 Q9Y3T9 76 85 NOC2L Nucleolar complex protein 2 homolog yes yes 2;3 0.0013565 54.259 By MS/MS By MS/MS By MS/MS 2 1 2 1.096 1.2715 16.942 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93392 1.1132 30.731 2 0 Median 1.1895 1.2715 NaN 1 0 Median 1.0662 1.2564 3.9046 2 0 Median NaN NaN NaN 0 0 Median 21276000 9834500 11441000 0 0 0 0 0 0 6729400 2903600 3825800 2112200 759180 1353100 12434000 6171800 6262200 0 0 0 20666 4433 21552 108475;108476;108477;108478;108479 109833;109834;109835;109836;109837;109838 109836 6 LKDREDADIQR VAMGSAWPWLLHSVRLKDREDADIQREDPQ HSVRLKDREDADIQREDPQARPLEGSSSED R L K Q R E 1 2 0 3 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 2 1357.695 Q12789 Q12789 1819 1829 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.01041 30.872 By MS/MS 1 0.74788 0.89872 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74788 0.89872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2429200 1478000 951250 0 0 0 0 0 0 2429200 1478000 951250 0 0 0 0 0 0 0 0 0 20667 2758 21553 108480 109839;109840 109840 2 LKDSEAELQR MEQVFEMKVKEKVQKLKDSEAELQRRHEQM EKVQKLKDSEAELQRRHEQMKKNLEAQHKE K L K Q R R 1 1 0 1 0 1 2 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1187.6146 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 352 361 SEPT7;DKFZp586I031 Septin-7 yes no 2;3 0.00045972 91.867 By matching By matching By MS/MS By MS/MS By matching 1 1 2 3 1 1.0254 1.0118 14.235 6 Median 0.87195 0.88838 NaN 1 0 Median 1.2611 1.1529 NaN 1 0 Median 0.93903 0.95303 NaN 1 0 Median 1.1815 1.121 6.0408 2 0 Median 0.80024 0.82927 NaN 1 0 Median NaN NaN NaN 0 0 Median 36931000 10916000 26015000 698990 334840 364150 1253500 571790 681690 23011000 7402500 15609000 10905000 2034900 8870400 1062100 572100 489960 0 0 0 20668 870 21554 108481;108482;108483;108484;108485;108486;108487;108488 109841;109842;109843;109844 109844 4 LKDSVYIFR SGTSGARKPASSKYKLKDSVYIFREGALPP ASSKYKLKDSVYIFREGALPPYRQMFYQLC K L K F R E 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 1 0 0 1 1 0 0 9 1 1139.6339 Q9Y5Q8;H7BY84 Q9Y5Q8 388 396 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.049031 61.999 By MS/MS 1 1.2063 1.3486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2063 1.3486 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5010800 2370700 2640100 0 0 0 0 0 0 5010800 2370700 2640100 0 0 0 0 0 0 0 0 0 20669 4466 21555 108489 109845 109845 1 LKDTENAIENMVGPDWK WDAAIYFMEEALQARLKDTENAIENMVGPD DTENAIENMVGPDWKKRWLYWKNRTQEQCV R L K W K K 1 0 2 2 0 0 2 1 0 1 1 2 1 0 1 0 1 1 0 1 0 0 17 1 1958.9408 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1 A0A2R8Y3X5 650 666 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.069514 9.0964 By MS/MS 1 0.88764 0.91825 NaN 1 Median 0.88764 0.91825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1953600 995050 958530 1953600 995050 958530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20670 357 21556 108490 109846 109846 1 LKDVLLQVDDER ERQAACKQVRRTEKKLKDVLLQVDDERRNA EKKLKDVLLQVDDERRNAEQYKDQADKAST K L K E R R 0 1 0 3 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 1 1441.7777 P35579 P35579 1844 1855 MYH9 Myosin-9 yes yes 2;3 0.00020428 69.01 By MS/MS 2 0.93423 0.88074 10.597 2 Median NaN NaN NaN 0 0 Median 0.93423 0.88074 10.597 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15003000 7578700 7424600 0 0 0 15003000 7578700 7424600 0 0 0 0 0 0 0 0 0 0 0 0 20671 2244 21557 108491;108492 109847;109848;109849 109848 3 LKDVLLQVDDERR ERQAACKQVRRTEKKLKDVLLQVDDERRNA KKLKDVLLQVDDERRNAEQYKDQADKASTR K L K R R N 0 2 0 3 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 13 2 1597.8788 P35579 P35579 1844 1856 MYH9 Myosin-9 yes yes 2;3;4 1.5128E-21 195.94 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 2 2 2 1.1972 1.2644 28.606 13 Median 1.3328 1.3599 12.169 4 0 Median 1.1145 1.2644 14.33 3 0 Median 1.5378 1.8479 57.741 2 1 Median 1.0497 1.0514 7.127 2 0 Median 1.0663 1.2083 45.827 2 0 Median NaN NaN NaN 0 0 Median 352420000 149850000 202570000 191790000 81794000 110000000 103800000 46475000 57325000 48465000 17803000 30662000 3081400 1550000 1531400 5277000 2227400 3049600 0 0 0 20672 2244 21558 108493;108494;108495;108496;108497;108498;108499;108500;108501;108502;108503;108504;108505 109850;109851;109852;109853;109854;109855;109856;109857;109858;109859;109860;109861;109862;109863;109864;109865 109855 16 LKDVQEQLSR DVANLANEKEELNNKLKDVQEQLSRLKDEE ELNNKLKDVQEQLSRLKDEEISAAAIKAQF K L K S R L 0 1 0 1 0 2 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1214.6619 O75116;E9PF63;Q14DU5 O75116 996 1005 ROCK2 Rho-associated protein kinase 2 yes no 3 0.013358 30.55 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.95059 0.94552 11.906 4 Median 0.97199 0.99491 NaN 1 0 Median 0.92966 0.89026 NaN 1 0 Median 0.78658 0.89859 NaN 1 0 Median 1.1911 1.1499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4322200 2330800 1991500 1335800 629070 706760 1265000 667240 597770 1261500 780310 481190 459900 254130 205770 0 0 0 0 0 0 20673 1644 21559 108506;108507;108508;108509 109866;109867 109866 2 LKDYAFIHFDER EKAFSQFGKLERVKKLKDYAFIHFDERDGA VKKLKDYAFIHFDERDGAVKAMEEMNGKDL K L K E R D 1 1 0 2 0 0 1 0 1 1 1 1 0 2 0 0 0 0 1 0 0 0 12 1 1552.7674 B7Z645;O60506 O60506 370 381 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 3 0.0007261 49.12 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 3 2 1 2 1.2245 1.2454 19.268 10 Median 1.0755 1.0801 NaN 1 0 Median 1.4666 1.3547 NaN 1 0 Median 1.2051 1.2807 12.881 3 0 Median 0.94662 0.89269 27.415 2 0 Median 1.2727 1.3226 NaN 1 0 Median 1.4044 1.2858 8.4848 2 0 Median 35157000 14667000 20490000 5937000 2744100 3192900 915660 506890 408770 21334000 8509500 12825000 3084900 1525400 1559400 2636500 865930 1770600 1248600 515320 733290 20674 1619;634 21560 108510;108511;108512;108513;108514;108515;108516;108517;108518;108519 109868;109869;109870;109871;109872;109873 109870 6 LKDYAFVHFEDR EKSFSEFGKLERVKKLKDYAFVHFEDRGAA VKKLKDYAFVHFEDRGAAVKAMDEMNGKEI K L K D R G 1 1 0 2 0 0 1 0 1 0 1 1 0 2 0 0 0 0 1 1 0 0 12 1 1538.7518 O43390;B4DT28 O43390 373 384 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 3.9184E-05 94.616 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 5 6 5 1.0628 1.0963 22.84 25 Median 2.0884 2.0981 NaN 1 0 Median 1.1768 0.77869 19.546 4 0 Linear 0.89715 0.96721 17.465 4 2 Median 1.2607 1.156 17.517 5 0 Median 1.0574 1.1423 7.2694 6 0 Median 1.2653 1.0963 14.917 5 0 Median 374330000 183210000 191120000 4887000 1595900 3291000 4580900 2239200 2341700 107870000 53099000 54768000 9708700 4699800 5008800 208980000 104420000 104570000 38301000 17158000 21143000 20675 1568 21561 108520;108521;108522;108523;108524;108525;108526;108527;108528;108529;108530;108531;108532;108533;108534;108535;108536;108537;108538;108539;108540;108541;108542;108543;108544;108545 109874;109875;109876;109877;109878;109879;109880;109881;109882;109883;109884;109885;109886;109887;109888;109889;109890;109891;109892;109893;109894;109895;109896;109897 109881 24 LKEAELLEPLMPAIR PNEFIRGSTLRFLCKLKEAELLEPLMPAIR LKEAELLEPLMPAIRACLEHRHSYVRRNAV K L K I R A 2 1 0 0 0 0 3 0 0 1 4 1 1 0 2 0 0 0 0 0 0 0 15 1 1721.975 P53618;E9PP73 P53618 127 141 COPB1 Coatomer subunit beta yes no 3 0.031131 18.138 By MS/MS By MS/MS By matching 1 3 1 0.8144 0.79532 16.788 4 Median 0.6961 0.72195 NaN 1 0 Median 0.8979 0.85658 17.122 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5998200 3327400 2670900 2140500 1272100 868330 3728700 1990200 1738500 0 0 0 0 0 0 0 0 0 129080 65048 64030 20676 2472 21562 108546;108547;108548;108549;108550 109898;109899;109900 109900 3 LKEAVEAIQNSTSIK KPKLPENYTDETWQKLKEAVEAIQNSTSIK LKEAVEAIQNSTSIKYNLEELYQAVENLCS K L K I K Y 2 0 1 0 0 1 2 0 0 2 1 2 0 0 0 2 1 0 0 1 0 0 15 1 1629.8938 Q13620;K4DI93;A6NE76 Q13620 220 234 CUL4B Cullin-4B yes no 2;3 0.00018813 84.289 By MS/MS By matching By MS/MS By matching By matching 3 2 3 2 1 0.89521 0.94277 22.133 11 Median 0.89521 0.94277 8.2102 3 0 Median 0.89096 0.8486 45.275 2 0 Median 0.75263 0.8535 18.141 3 0 Median 0.81666 0.7878 35.475 2 0 Median NaN NaN NaN 0 0 Median 1.1297 1.0215 NaN 1 0 Median 33921000 17124000 16797000 13892000 6826600 7065700 1890000 960440 929610 14010000 7175300 6834900 2942200 1674500 1267700 0 0 0 1186400 487620 698730 20677 1358 21563 108551;108552;108553;108554;108555;108556;108557;108558;108559;108560;108561 109901;109902;109903;109904;109905;109906 109904 6 LKECCDKPLLEK LAKYICDNQDTISSKLKECCDKPLLEKSHC SSKLKECCDKPLLEKSHCIAEVEKDAIPEN K L K E K S 0 0 0 1 2 0 2 0 0 0 3 3 0 0 1 0 0 0 0 0 0 0 12 2 1531.7738 CON__P02769 CON__P02769 298 309 yes yes 3 0.0035686 82.55 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4107000 4107000 0 0 0 0 4107000 4107000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20678 746 21564 108562 109907 109907 1 LKEDILENEDEQNSPPK TASESDEQQWPEEKRLKEDILENEDEQNSP EDILENEDEQNSPPKKGKRGRPPKPLGGGT R L K P K K 0 0 2 2 0 1 4 0 0 1 2 2 0 0 2 1 0 0 0 0 0 0 17 1 1996.9589 Q9NTI5;A9IYQ1 Q9NTI5 1270 1286 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.00029834 51.265 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20679 4107 21565 108563 109908 109908 1 LKEDISQGVHISVYR RKLTAEQRKVKKIKKLKEDISQGVHISVYR LKEDISQGVHISVYRVRNLSNPAKKFKIEA K L K Y R V 0 1 0 1 0 1 1 1 1 2 1 1 0 0 0 2 0 0 1 2 0 0 15 1 1742.9315 O43395 O43395 533 547 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 3;4 0.00016508 48.823 By MS/MS By MS/MS 3 1 1.0042 1.0067 20.022 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95936 1.0183 23.78 3 1 Median 1.051 0.99511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19952000 10066000 9885200 0 0 0 0 0 0 17746000 9026200 8719400 2206000 1040100 1165800 0 0 0 0 0 0 20680 1569 21566 108564;108565;108566;108567 109909;109910;109911;109912 109910 4 LKEDKAPQVDVDK PLRLAVRQQGDLVRKLKEDKAPQVDVDKAV RKLKEDKAPQVDVDKAVAELKARKRVLEAK K L K D K A 1 0 0 3 0 1 1 0 0 0 1 3 0 0 1 0 0 0 0 2 0 0 13 2 1483.7882 P41250 P41250 81 93 GARS Glycine--tRNA ligase yes yes 3 0.073301 12.146 By MS/MS 1 1.2559 1.2253 NaN 1 Median NaN NaN NaN 0 0 Median 1.2559 1.2253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1083700 464450 619210 0 0 0 1083700 464450 619210 0 0 0 0 0 0 0 0 0 0 0 0 20681 2301 21567 108568 109913 109913 1 LKEDLEIEHR LRTQLLFSHEEELSKLKEDLEIEHRINIEK EELSKLKEDLEIEHRINIEKLKDNLGIHYK K L K H R I 0 1 0 1 0 0 3 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1280.6725 A0A0A0MRF6;Q99996;A0A0A0MRE9;A0A087WX84 A0A0A0MRF6 651 660 AKAP9 A-kinase anchor protein 9 yes no 3 0.060164 24.853 By MS/MS 1 0.75215 0.76127 NaN 1 Median 0.75215 0.76127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 926560 467700 458870 926560 467700 458870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20682 158 21568 108569 109914 109914 1 LKEDQPWMVIEGIR YVLEYRRTNFEGPPRLKEDQPWMVIEGIRQ RLKEDQPWMVIEGIRQTEYTLTGLKFDMKY R L K I R Q 0 1 0 1 0 1 2 1 0 2 1 1 1 0 1 0 0 1 0 1 0 0 14 1 1712.892 M0R366;Q9BTV5 M0R366 213 226 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 3 0.0063948 27.335 By MS/MS By matching 2 1 0.74792 0.83795 27.604 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64244 0.71482 22.476 2 0 Median 1.1261 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9576400 5622100 3954300 0 0 0 0 0 0 9363500 5498700 3864800 212880 123430 89452 0 0 0 0 0 0 20683 1438 21569 108570;108571;108572 109915 109915 1 LKEDVLEQR KAEARAFEEDQVAGRLKEDVLEQRGRLQKL DQVAGRLKEDVLEQRGRLQKLVAKEIQAPA R L K Q R G 0 1 0 1 0 1 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1128.6139 O43818 O43818 112 120 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.008167 78.334 By MS/MS By matching 1 1 1.3226 1.274 11.871 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1447 1.1715 NaN 1 0 Median 1.5281 1.3856 NaN 1 0 Median 14660000 6441000 8219200 0 0 0 0 0 0 0 0 0 0 0 0 11953000 5301400 6651400 2707400 1139600 1567800 20684 1594 21570 108573;108574 109916 109916 1 LKEEIDLLNR RLVRLMQDKEEMIGKLKEEIDLLNRDLDDI EMIGKLKEEIDLLNRDLDDIEDENEQLKQE K L K N R D 0 1 1 1 0 0 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1241.698 Q96IZ0;H0YHP5 Q96IZ0 303 312 PAWR PRKC apoptosis WT1 regulator protein yes no 2;3 0.00046051 65.5 By MS/MS By MS/MS 4 2 0.86888 0.9387 25.793 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0091 1.0822 15.824 4 0 Median 0.72398 0.66646 3.5205 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17933000 9114400 8818700 0 0 0 0 0 0 15521000 7782200 7738300 2412600 1332300 1080300 0 0 0 0 0 0 20685 3681 21571 108575;108576;108577;108578;108579;108580 109917;109918;109919;109920;109921 109917 5 LKEEIEVMAK IAPLFDKFTPLPEGKLKEEIEVMAKSIDFP LPEGKLKEEIEVMAKSIDFPLTKVYVVEGS K L K A K S 1 0 0 0 0 0 3 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 10 1 1188.6424 O75844 O75844 234 243 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2;3 0.00033136 103.26 By MS/MS By MS/MS By matching 2 2 1 1.2318 1.2946 20.963 4 Linear 1.0559 1.1461 26.734 2 1 Median 1.0892 1.0391 NaN 1 0 Median 0.83992 0.84826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61670000 14679000 46991000 22772000 9793300 12979000 36837000 4168400 32669000 2060600 716940 1343700 0 0 0 0 0 0 0 0 0 20686 1700 21572;21573 108581;108582;108583;108584;108585 109922;109923;109924 109923 561 3 LKEEITQLTNNLQDMK DSVKNTKDLNVKELKLKEEITQLTNNLQDM KEEITQLTNNLQDMKHLLQLKEEEEETNRQ K L K M K H 0 0 2 1 0 2 2 0 0 1 3 2 1 0 0 0 2 0 0 0 0 0 16 1 1916.9877 Q96Q89 Q96Q89 1225 1240 KIF20B Kinesin-like protein KIF20B yes yes 3 0.068109 9.9222 By MS/MS 1 0.91642 1.0584 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91642 1.0584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5883400 2728800 3154500 0 0 0 0 0 0 5883400 2728800 3154500 0 0 0 0 0 0 0 0 0 20687 3717 21574 108586 109925;109926 109925 2 LKEELEEAR QKEMDEAATAEERGRLKEELEEARDIARRR AEERGRLKEELEEARDIARRRSLGNIKFIG R L K A R D 1 1 0 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1115.5823 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6 E7EX73 717 725 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 2.3276E-06 130.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 1 1.1102 1.1413 19.623 8 Median 1.0204 1.0266 NaN 1 0 Median 1.0761 1.0047 15.376 2 1 Median 1.2035 1.4429 NaN 1 0 Median 1.447 1.3906 24.969 3 2 Median 1.0241 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median 50937000 23314000 27622000 8877400 4201400 4676100 24805000 11240000 13565000 8610700 3900200 4710500 6500100 3028100 3471900 2143800 944490 1199300 0 0 0 20688 894 21575 108587;108588;108589;108590;108591;108592;108593;108594;108595 109927;109928;109929;109930;109931;109932;109933;109934;109935;109936;109937 109933 11 LKEELEEARDIAR QKEMDEAATAEERGRLKEELEEARDIARRR GRLKEELEEARDIARRRSLGNIKFIGELFK R L K A R R 2 2 0 1 0 0 4 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1570.8315 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6 E7EX73 717 729 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3;4 1.1557E-10 180.97 By MS/MS By matching 4 1 1.1386 1.1618 69.934 4 Median 1.1248 1.1477 68.826 3 0 Median NaN NaN NaN 0 0 Median 1.5925 1.7953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72885000 33697000 39189000 69981000 32342000 37640000 0 0 0 2903900 1355000 1549000 0 0 0 0 0 0 0 0 0 20689 894 21576 108596;108597;108598;108599;108600 109938;109939;109940;109941;109942 109938 5 LKEELIDAIR LKQDILDEMRKELTKLKEELIDAIRQELSK KELTKLKEELIDAIRQELSKSNTA______ K L K I R Q 1 1 0 1 0 0 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1198.6921 A0A0U1RRM6;Q8N8S7 A0A0U1RRM6 784 793 ENAH Protein enabled homolog yes no 3 0.00015971 73.887 By matching By matching By MS/MS By matching 1 1 1 2 1.1176 1.1416 15.634 5 Median 1.1176 1.1416 NaN 1 0 Median 1.0497 1.0551 NaN 1 0 Median 1.2386 1.3145 NaN 1 0 Median 1.0848 1.0184 22.605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8815100 3967600 4847500 1938900 830600 1108300 444850 191640 253210 5609900 2535700 3074300 821410 409750 411660 0 0 0 0 0 0 20690 313 21577 108601;108602;108603;108604;108605 109943 109943 1 LKEELQVHEQK QKMELHQLTEEDRERLKEELQVHEQKTSEF DRERLKEELQVHEQKTSEFSRRVAEIQFLL R L K Q K T 0 0 0 0 0 2 3 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1379.7409 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1682 1692 SYNE2 Nesprin-2 yes no 3 0.052243 17.167 By matching By matching By MS/MS By matching 1 2 1 1 0.95758 0.93038 30.594 5 Median 0.80777 0.81573 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4186 1.4944 5.7656 2 0 Median NaN NaN NaN 0 0 Median 0.89047 0.93038 NaN 1 0 Median 0.95758 0.84659 NaN 1 0 Median 2707800 1255100 1452700 412210 210560 201650 0 0 0 629370 265520 363850 0 0 0 1115100 528090 586960 551140 250920 300210 20691 3521 21578 108606;108607;108608;108609;108610 109944 109944 1 LKEELSEVETK RIHVELSEKGEATQKLKEELSEVETKYQHL ATQKLKEELSEVETKYQHLKAEFKQLQQQR K L K T K Y 0 0 0 0 0 0 4 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 11 1 1303.6871 Q15075 Q15075 377 387 EEA1 Early endosome antigen 1 yes yes 2;3 0.00080064 112.75 By MS/MS By MS/MS 2 2 0.92648 0.9039 21.937 4 Median 0.82818 0.82076 13.074 2 0 Median 1.1098 1.0725 23.609 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15615000 7713900 7900700 8705800 4528600 4177200 6908800 3185300 3723500 0 0 0 0 0 0 0 0 0 0 0 0 20692 2926 21579 108611;108612;108613;108614 109945;109946;109947;109948;109949 109948 5 LKEENFFGPK PPEAQFKAQGRIYGKLKEENFFGPKEEVKL RIYGKLKEENFFGPKEEVKLETHIRVPASA K L K P K E 0 0 1 0 0 0 2 1 0 0 1 2 0 2 1 0 0 0 0 0 0 0 10 1 1207.6237 Q9NZI8 Q9NZI8 474 483 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 0.00053555 101.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 2 5 1.1159 1.0238 32.645 15 Median 0.78624 0.73596 42.695 3 0 Median 1.1699 1.091 NaN 1 0 Median 1.1307 1.2587 1.8487 2 0 Median 1.1846 1.0938 6.8371 2 0 Median 1.2086 1.3011 33.009 2 1 Median 1.0747 0.95782 11.665 5 0 Median 105780000 50835000 54946000 29923000 16380000 13543000 15886000 7008400 8877800 24972000 10844000 14127000 9816500 4538100 5278400 4055200 1903200 2152000 21129000 10161000 10968000 20693 4188 21580 108615;108616;108617;108618;108619;108620;108621;108622;108623;108624;108625;108626;108627;108628;108629 109950;109951;109952;109953;109954;109955;109956;109957;109958;109959;109960;109961;109962;109963;109964;109965;109966 109952 17 LKEENFFGPKEEVK PPEAQFKAQGRIYGKLKEENFFGPKEEVKL KLKEENFFGPKEEVKLETHIRVPASAAGRV K L K V K L 0 0 1 0 0 0 4 1 0 0 1 3 0 2 1 0 0 0 0 1 0 0 14 2 1692.8723 Q9NZI8 Q9NZI8 474 487 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3;4 0.0023117 48.527 By MS/MS 2 0.87157 0.8894 6.2085 2 Median 0.87157 0.8894 6.2085 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43744000 23035000 20708000 43744000 23035000 20708000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20694 4188 21581 108630;108631 109967;109968;109969 109969 3 LKEENFFNPK PPEAQFKAQGRIFGKLKEENFFNPKEEVKL RIFGKLKEENFFNPKEEVKLEAHIRVPSST K L K P K E 0 0 2 0 0 0 2 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 10 1 1264.6452 F8W930;Q9Y6M1 F8W930 502 511 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 3 0.047406 19.243 By matching By MS/MS 1 1 0.89522 0.83738 12.08 2 Median 0.81134 0.76882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98777 0.91206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4312400 2254000 2058400 3378400 1827000 1551400 0 0 0 0 0 0 933980 426960 507020 0 0 0 0 0 0 20695 1088 21582 108632;108633 109970 109970 1 LKEENFFNPKEEVK PPEAQFKAQGRIFGKLKEENFFNPKEEVKL KLKEENFFNPKEEVKLEAHIRVPSSTAGRV K L K V K L 0 0 2 0 0 0 4 0 0 0 1 3 0 2 1 0 0 0 0 1 0 0 14 2 1749.8938 F8W930;Q9Y6M1 F8W930 502 515 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 4 0.043273 15.64 By MS/MS By matching 1 1 1.5215 1.5211 19.398 2 Median 1.7098 1.7447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3539 1.3261 NaN 1 0 Median 12101000 3530200 8571200 9600700 3054500 6546200 0 0 0 0 0 0 0 0 0 0 0 0 2500800 475670 2025100 20696 1088 21583 108634;108635 109971 109971 1 LKEEYQSLIR KTNAGPRDRELWVQRLKEEYQSLIRYVENN LWVQRLKEEYQSLIRYVENNKNADNDWFRL R L K I R Y 0 1 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 10 1 1277.698 Q9Y3C8 Q9Y3C8 32 41 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 2;3 0.00012317 115.23 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1829 1.1488 16.121 7 Median 1.0247 1.0057 12.744 2 1 Median 1.1923 1.1488 22.062 3 2 Median 1.1829 1.232 NaN 1 0 Median 1.3066 1.1566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90573000 43263000 47309000 59242000 29098000 30144000 21810000 10221000 11589000 7976200 3264900 4711200 1544400 679570 864820 0 0 0 0 0 0 20697 4420 21584 108636;108637;108638;108639;108640;108641;108642 109972;109973;109974;109975;109976;109977;109978;109979;109980 109973 9 LKEFLEDYDDDRDDPK REEERRREMAKEAKRLKEFLEDYDDDRDDP KEFLEDYDDDRDDPKYYRGSALQKRLRDRE R L K P K Y 0 1 0 6 0 0 2 0 0 0 2 2 0 1 1 0 0 0 1 0 0 0 16 2 2011.9011 P49756 P49756 496 511 RBM25 RNA-binding protein 25 yes yes 3 0.001684 33.313 By MS/MS 2 0.82693 0.98524 10.315 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82693 0.98524 10.315 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21084000 10899000 10186000 0 0 0 0 0 0 21084000 10899000 10186000 0 0 0 0 0 0 0 0 0 20698 2397 21585 108643;108644 109981 109981 1 LKEFVDYYYSTNR VDVTDVTKQKDCKMKLKEFVDYYYSTNRKR MKLKEFVDYYYSTNRKRVLNVTNLEFSDTR K L K N R K 0 1 1 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 3 1 0 0 13 1 1696.8097 O75151 O75151 174 186 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.0075739 28.976 By MS/MS 1 0.6175 0.6993 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6175 0.6993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4419900 2323000 2096900 0 0 0 0 0 0 4419900 2323000 2096900 0 0 0 0 0 0 0 0 0 20699 1649 21586 108645 109982 109982 1 LKEGDTIIVPGVEGPIVTQIR PGMGTTIDVILINGRLKEGDTIIVPGVEGP IIVPGVEGPIVTQIRGLLLPPPMKELRVKN R L K I R G 0 1 0 1 0 1 2 3 0 4 1 1 0 0 2 0 2 0 0 3 0 0 21 1 2233.2682 A0A087WUT6;O60841 A0A087WUT6 882 902 EIF5B Eukaryotic translation initiation factor 5B yes no 2;3 3.7161E-14 90.464 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 1 1 1 0.85913 0.85231 9.178 8 Median 0.83886 0.85231 6.3464 4 0 Median 0.86364 0.82294 NaN 1 0 Median 0.93111 1.0556 NaN 1 0 Median 0.8923 0.86141 NaN 1 0 Median 0.70621 0.8015 NaN 1 0 Median NaN NaN NaN 0 0 Median 47899000 24711000 23189000 26453000 13817000 12635000 1327600 726120 601520 15365000 7677100 7688000 3070300 1565200 1505200 1683500 924900 758600 0 0 0 20700 35 21587 108646;108647;108648;108649;108650;108651;108652;108653 109983;109984;109985;109986;109987;109988;109989;109990;109991;109992;109993 109983 11 LKEGDTMMGQQVAK LFLTVDPYMRVAAKRLKEGDTMMGQQVAKV RLKEGDTMMGQQVAKVVESKNVALPKGTIV R L K A K V 1 0 0 1 0 2 1 2 0 0 1 2 2 0 0 0 1 0 0 1 0 0 14 1 1534.7483 Q14914;F2Z3J9 Q14914 57 70 PTGR1 Prostaglandin reductase 1 yes no 3 0.00088888 41.092 By MS/MS By MS/MS 1 1 0.93688 0.87794 13.685 2 Median 0.81748 0.79696 NaN 1 0 Median 1.0737 0.96714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11449000 6227600 5221200 6423500 3652300 2771200 5025300 2575300 2450000 0 0 0 0 0 0 0 0 0 0 0 0 20701 995 21588 108654;108655 109994;109995;109996 109994 3 LKEHCKVEYQIK DVVIPLKDVSLLTQKLKEHCKVEYQIKTFS TQKLKEHCKVEYQIKTFSGQTHGFVHRKRE K L K I K T 0 0 0 0 1 1 2 0 1 1 1 3 0 0 0 0 0 0 1 1 0 0 12 2 1573.8286 Q96DG6 Q96DG6 194 205 CMBL Carboxymethylenebutenolidase homolog yes yes 3 0.062725 14.561 By MS/MS 1 1.4742 1.4426 NaN 1 Median NaN NaN NaN 0 0 Median 1.4742 1.4426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 853670 283410 570260 0 0 0 853670 283410 570260 0 0 0 0 0 0 0 0 0 0 0 0 20702 3626 21589 108656 109997 109997 1 LKEHIIGQESAIATVGAAIR KREAEERRRFPLEQRLKEHIIGQESAIATV IGQESAIATVGAAIRRKENGWYDEEHPLVF R L K I R R 4 1 0 0 0 1 2 2 1 4 1 1 0 0 0 1 1 0 0 1 0 0 20 1 2076.1691 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 348 367 CLPB Caseinolytic peptidase B protein homolog no no 3 9.9337E-06 43.955 By MS/MS By matching 1 1 0.98001 1.0041 19.329 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78292 0.87581 NaN 1 0 Median 1.2267 1.1511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6140700 2569500 3571100 0 0 0 0 0 0 5864900 2450400 3414500 275720 119120 156600 0 0 0 0 0 0 20703 1181 21590 108657;108658 109998 109998 1 LKEIEHNLSK IVKSYENELDPLKNRLKEIEHNLSKIMKLD PLKNRLKEIEHNLSKIMKLDNEIKALDSRK R L K S K I 0 0 1 0 0 0 2 0 1 1 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1209.6717 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 255 264 RAD50 DNA repair protein RAD50 yes no 2;3 0.0005253 63.694 By matching By MS/MS By matching By matching By matching By matching 1 4 2 2 2 1 1.1525 1.1556 35.94 12 Median 1.011 1.0492 NaN 1 0 Median 1.3456 1.259 67.177 4 0 Median 0.98779 1.1311 1.9941 2 0 Median 1.2029 1.1322 3.9324 2 0 Median 1.1287 1.1868 1.427 2 0 Median 1.2485 1.14 NaN 1 0 Median 15685000 7138400 8547100 854930 375470 479470 5045900 2021600 3024300 6243300 3107500 3135800 409840 167290 242550 2960100 1407000 1553100 171330 59565 111770 20704 3561 21591 108659;108660;108661;108662;108663;108664;108665;108666;108667;108668;108669;108670 109999;110000;110001 110001 3 LKEIFMQVEDERR ERAAANKLVRRTEKKLKEIFMQVEDERRHA KKLKEIFMQVEDERRHADQYKEQMEKANAR K L K R R H 0 2 0 1 0 1 3 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 13 2 1691.8665 P35580 P35580 1851 1863 MYH10 Myosin-10 yes yes 3;4 2.5906E-07 102.62 By MS/MS By MS/MS 2 2 1.0833 1.1053 34.955 4 Median 1.0833 1.1053 3.5164 2 0 Median 1.1092 1.2585 59.033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42028000 20541000 21488000 35584000 17566000 18018000 6444400 2974600 3469900 0 0 0 0 0 0 0 0 0 0 0 0 20705 2245 21592 108671;108672;108673;108674 110002;110003;110004;110005;110006 110003 5 LKEIKEELLHSEK DAMRSVTKQAIREARLKEIKEELLHSEKLK ARLKEIKEELLHSEKLKTYFEDNPRDLQLL R L K E K L 0 0 0 0 0 0 4 0 1 1 3 3 0 0 0 1 0 0 0 0 0 0 13 2 1594.893 Q9NY93;H7BZN7 Q9NY93 447 459 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 4 0.0002452 74.987 By MS/MS 1 1.4519 1.5815 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4519 1.5815 NaN 1 1 Median NaN NaN NaN 0 0 Median 6105000 533480 5571600 0 0 0 0 0 0 0 0 0 0 0 0 6105000 533480 5571600 0 0 0 20706 4173 21593 108675 110007 110007 1 LKEIYENMAPGENKR SVPKPLKFLRPHYGKLKEIYENMAPGENKR LKEIYENMAPGENKRFAADIISVLAMTMSG K L K K R F 1 1 2 0 0 0 3 1 0 1 1 2 1 0 1 0 0 0 1 0 0 0 15 2 1790.8985 Q13200;C9JPC0;H7C2Q3 Q13200 106 120 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3;4 1.5614E-12 97.214 By MS/MS By MS/MS By matching 5 2 1 0.95984 1.058 9.4574 6 Median 0.92949 1.0565 11.068 3 0 Plateau 1.0622 1.1242 3.0264 2 0 Median NaN NaN NaN 0 0 Median 0.99117 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37827000 18869000 18958000 27159000 14102000 13057000 9665700 4385000 5280800 0 0 0 1002300 382420 619860 0 0 0 0 0 0 20707 2796 21594 108676;108677;108678;108679;108680;108681;108682;108683 110008;110009;110010;110011;110012;110013;110014;110015;110016 110012 9 LKEKLEAEMK SGYRKDQEALEAVKRLKEKLEAEMKKLNYE EAVKRLKEKLEAEMKKLNYEENKEESLLEK R L K M K K 1 0 0 0 0 0 3 0 0 0 2 3 1 0 0 0 0 0 0 0 0 0 10 2 1217.669 O95347 O95347 457 466 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 0.032094 23.376 By MS/MS By MS/MS By matching 1 1 1 1.0955 1.1466 8.5104 3 Median 1.2548 1.3154 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95423 1.1466 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0955 1.1256 NaN 1 0 Median NaN NaN NaN 0 0 Median 4912600 2615100 2297500 1737300 1066500 670830 0 0 0 2576300 1248700 1327500 0 0 0 599080 299910 299170 0 0 0 20708 1766 21595 108684;108685;108686 110017;110018 110018 2 LKELESQVSGLEK DVQASQAEADQQQTRLKELESQVSGLEKEA TRLKELESQVSGLEKEAIELREAVEQQKVK R L K E K E 0 0 0 0 0 1 3 1 0 0 3 2 0 0 0 2 0 0 0 1 0 0 13 1 1458.793 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 989 1001 RRBP1 Ribosome-binding protein 1 yes no 2;3 1.2196E-05 121.04 By MS/MS By MS/MS By MS/MS By matching 4 2 4 1 1.131 1.1889 28.096 11 Median 1.0022 1.0143 21.147 4 0 Median 1.1144 1.0622 25.86 2 0 Median NaN NaN NaN 0 0 Median 1.4067 1.3251 20.712 4 0 Median NaN NaN NaN 0 0 Median 0.66236 0.60187 NaN 1 0 Median 41477000 18952000 22525000 24462000 12122000 12340000 3953000 1653700 2299300 0 0 0 12691000 4951900 7739500 0 0 0 370150 223780 146370 20709 4222 21596 108687;108688;108689;108690;108691;108692;108693;108694;108695;108696;108697 110019;110020;110021;110022;110023;110024;110025;110026;110027;110028 110027 10 LKELEVAEGGK GCRECKRKVAECQRKLKELEVAEGGKAELE CQRKLKELEVAEGGKAELERLQAEAQQLRK K L K G K A 1 0 0 0 0 0 3 2 0 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1171.6449 Q16543;K7EKQ2;K7EQA9 Q16543 68 78 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.00083626 78.655 By MS/MS By MS/MS 1 1 0.81361 0.77336 9.2808 2 Median 0.75418 0.72423 NaN 1 1 Median 0.87773 0.82581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7057600 4325100 2732400 4885600 3174400 1711200 2172000 1150800 1021200 0 0 0 0 0 0 0 0 0 0 0 0 20710 2988 21597 108698;108699 110029;110030 110030 2 LKELIFEETAR PFKFDMELDDLPKEKLKELIFEETARFQPG PKEKLKELIFEETARFQPGYRS________ K L K A R F 1 1 0 0 0 0 3 0 0 1 2 1 0 1 0 0 1 0 0 0 0 0 11 1 1347.7398 P28482 P28482 343 353 MAPK1 Mitogen-activated protein kinase 1 yes yes 2;3 4.8501E-05 92.538 By MS/MS By matching By MS/MS By MS/MS 2 2 5 3 1.126 1.1444 11.954 11 Median 0.97395 1.0437 8.3594 2 0 Median 1.2017 1.121 7.0388 2 0 Median 1.099 1.2274 11.172 4 1 Median 1.2269 1.0761 8.021 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67748000 32885000 34863000 35267000 17451000 17816000 1525500 685230 840250 26775000 12736000 14039000 4180400 2012200 2168100 0 0 0 0 0 0 20711 2166 21598 108700;108701;108702;108703;108704;108705;108706;108707;108708;108709;108710;108711 110031;110032;110033;110034;110035;110036;110037;110038;110039;110040;110041;110042;110043 110032 13 LKELIFQETAR PFTFAMELDDLPKERLKELIFQETARFQPG PKERLKELIFQETARFQPGVLEAP______ R L K A R F 1 1 0 0 0 1 2 0 0 1 2 1 0 1 0 0 1 0 0 0 0 0 11 1 1346.7558 P27361;E9PBK7;B3KR49;H0YEX6;E9PRH7 P27361 360 370 MAPK3 Mitogen-activated protein kinase 3 yes no 2;3 9.9409E-05 110.38 By MS/MS By MS/MS By matching By matching 3 2 3 1 1.1242 1.0763 43.083 9 Median 1.124 1.1724 5.0178 3 0 Plateau NaN NaN NaN 0 0 Median 0.94137 1.0722 0.40947 2 0 Median 2.3241 2.0622 76.501 3 0 Plateau 1.324 1.4252 NaN 1 0 Median NaN NaN NaN 0 0 Median 80003000 37910000 42093000 47944000 22651000 25293000 0 0 0 28313000 13775000 14537000 2359400 730120 1629300 1386800 753360 633400 0 0 0 20712 2153 21599 108712;108713;108714;108715;108716;108717;108718;108719;108720 110044;110045;110046;110047 110047 4 LKELQAIAER KDKILSEEGRRQQAKLKELQAIAERLGCTL RQQAKLKELQAIAERLGCTLPQLAIAWCLR K L K E R L 2 1 0 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1169.6768 A0A590UJB6;Q13303;A0A590UJJ4 A0A590UJB6 320 329 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 2 0.017979 55.461 By MS/MS 1 0.99642 1.0893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99642 1.0893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2469700 1146900 1322900 0 0 0 0 0 0 2469700 1146900 1322900 0 0 0 0 0 0 0 0 0 20713 484 21600 108721 110048 110048 1 LKELQNEVEK AIKARVREMEEEAEKLKELQNEVEKQMNMS EEAEKLKELQNEVEKQMNMSPPPGNAGPVI K L K E K Q 0 0 1 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1228.6663 Q86U42;B4DEH8;G3V4T2 Q86U42 136 145 PABPN1 Polyadenylate-binding protein 2 yes no 3 0.01733 26.971 By matching By matching By MS/MS By matching By matching 1 1 1 1 2 1.1295 0.99298 49.197 6 Median NaN NaN NaN 0 0 Median 1.0155 0.92424 NaN 1 0 Median 0.86412 0.94164 NaN 1 0 Median 1.1541 1.0277 NaN 1 0 Median 1.2342 1.299 NaN 1 0 Median 2.0588 1.7734 86.869 2 0 Median 6191300 2902000 3289300 0 0 0 564480 342270 222210 2470100 1297200 1172900 971030 446120 524910 1208700 496390 712290 977040 320060 656980 20714 3270 21601 108722;108723;108724;108725;108726;108727 110049;110050 110050 2 LKELSYMVVSR KVGSPFELVVSGNKRLKELSYMVVSRGQLV GNKRLKELSYMVVSRGQLVAVGKQNSTMFS R L K S R G 0 1 0 0 0 0 1 0 0 0 2 1 1 0 0 2 0 0 1 2 0 0 11 1 1323.7221 Q6YHK3 Q6YHK3 493 503 CD109 CD109 antigen yes yes 3 0.028956 23.118 By MS/MS By matching 2 2 1.0869 1.0763 21.62 4 Median 1.1462 1.175 8.3909 2 0 Median 0.93459 0.88721 23.289 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6189700 2913300 3276400 4160100 1962100 2198100 2029500 951170 1078400 0 0 0 0 0 0 0 0 0 0 0 0 20715 3193 21602 108728;108729;108730;108731 110051 110051 1 LKEQGQAPITPQQGQALAK GTKKDLRAQPDTLRRLKEQGQAPITPQQGQ GQAPITPQQGQALAKQIHAVRYLECSALQQ R L K A K Q 3 0 0 0 0 5 1 2 0 1 2 2 0 0 2 0 1 0 0 0 0 0 19 1 2005.0956 P84095 P84095 129 147 RHOG Rho-related GTP-binding protein RhoG yes yes 3 2.1317E-05 46.543 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.87297 0.81035 9.3316 5 Median 0.73562 0.73185 NaN 1 0 Median 0.83051 0.73448 NaN 1 0 Median 0.87297 0.89204 NaN 1 0 Median 0.9709 0.87404 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96072 0.81035 NaN 1 0 Median 40411000 22239000 18172000 28421000 16055000 12366000 6222500 3273100 2949500 2765400 1434900 1330500 2633800 1281100 1352600 0 0 0 368390 195460 172930 20716 2667 21603 108732;108733;108734;108735;108736 110052;110053;110054;110055;110056;110057;110058;110059;110060 110053 9 LKEQSIFGDHRDEEEETHMK RRKQQTLEAEEAKRRLKEQSIFGDHRDEEE IFGDHRDEEEETHMKKSESEVEEAAAIIAQ R L K M K K 0 1 0 2 0 1 5 1 2 1 1 2 1 1 0 1 1 0 0 0 0 0 20 2 2457.1231 Q16643;D6R9W4 Q16643 251 270 DBN1 Drebrin yes no 5 0.068602 8.089 By matching By matching By MS/MS 2 1 1 0.8883 0.99392 18.028 4 Median 0.8883 0.99392 0.11852 2 0 Median 1.3152 1.392 NaN 1 0 Median 0.7525 0.93746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10358000 5168000 5190100 4937800 2497700 2440100 1844600 900400 944250 3575700 1769900 1805800 0 0 0 0 0 0 0 0 0 20717 2991 21604 108737;108738;108739;108740 110061 110061 1 LKESAEFQTQLEK EKQVTEEVRKNIEVRLKESAEFQTQLEKKL VRLKESAEFQTQLEKKLMEVEKEKQELQDD R L K E K K 1 0 0 0 0 2 3 0 0 0 2 2 0 1 0 1 1 0 0 0 0 0 13 1 1549.7988 P12270 P12270 994 1006 TPR Nucleoprotein TPR yes yes 2;3 1.3217E-07 133.07 By matching By MS/MS By MS/MS By MS/MS 3 3 4 4 1.0453 1.1007 29.753 14 Median 0.72846 0.77004 53.423 3 0 Median 1.3273 1.2742 17.475 3 0 Median 0.97641 1.076 2.8548 4 0 Linear 1.1858 1.1571 11.094 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145360000 70845000 74518000 10049000 5641600 4407000 22542000 9261200 13281000 96233000 48791000 47442000 16540000 7151700 9387900 0 0 0 0 0 0 20718 1978 21605 108741;108742;108743;108744;108745;108746;108747;108748;108749;108750;108751;108752;108753;108754 110062;110063;110064;110065;110066;110067;110068;110069;110070;110071;110072;110073;110074;110075;110076;110077;110078;110079;110080;110081 110077 20 LKESAEFQTQLEKK EKQVTEEVRKNIEVRLKESAEFQTQLEKKL RLKESAEFQTQLEKKLMEVEKEKQELQDDK R L K K K L 1 0 0 0 0 2 3 0 0 0 2 3 0 1 0 1 1 0 0 0 0 0 14 2 1677.8938 P12270 P12270 994 1007 TPR Nucleoprotein TPR yes yes 3;4 3.1819E-06 90.707 By MS/MS By MS/MS 4 4 0.90216 1.054 8.5605 8 Median 0.86415 0.98273 6.874 4 0 Median NaN NaN NaN 0 0 Median 0.94583 1.1344 9.1041 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47844000 23576000 24268000 18171000 9111700 9059000 0 0 0 29673000 14464000 15209000 0 0 0 0 0 0 0 0 0 20719 1978 21606 108755;108756;108757;108758;108759;108760;108761;108762 110082;110083;110084;110085;110086;110087;110088;110089;110090;110091;110092;110093 110093 12 LKESEEANEDLRR QNKELENKYAKLEEKLKESEEANEDLRRSF EKLKESEEANEDLRRSFNALQEEKQDLSKE K L K R R S 1 2 1 1 0 0 4 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 13 2 1587.7853 Q14789 Q14789 2576 2588 GOLGB1 Golgin subfamily B member 1 yes yes 3;4 0.010585 27.029 By matching By MS/MS By matching By matching 2 2 1 1 1.0692 1.0866 22.076 5 Median 0.90744 0.90028 4.7418 2 0 Median 1.1877 1.1453 NaN 1 0 Median 1.3491 1.5348 NaN 1 0 Median 1.0692 1.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17017000 6025700 10991000 3947900 1869800 2078100 12388000 3851700 8536700 319970 114070 205900 360590 190080 170520 0 0 0 0 0 0 20720 2900 21607 108763;108764;108765;108766;108767;108768 110094;110095 110094 2 LKESNTTKGELQLK ELEYLTEDVKRLNEKLKESNTTKGELQLKL KLKESNTTKGELQLKLDELQASDVSVKYRE K L K L K L 0 0 1 0 0 1 2 1 0 0 3 3 0 0 0 1 2 0 0 0 0 0 14 2 1587.8832 P12270 P12270 152 165 TPR Nucleoprotein TPR yes yes 3 0.0044147 31.827 By MS/MS By MS/MS 1 1 0.95501 1.0492 5.6332 2 Median NaN NaN NaN 0 0 Median 0.96784 1.0082 NaN 1 0 Median 0.94235 1.0918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6782100 3157000 3625100 0 0 0 1073100 557110 515940 5709100 2599900 3109200 0 0 0 0 0 0 0 0 0 20721 1978 21608 108769;108770 110096;110097;110098 110097 3 LKESQTQDNITVR IFGPLVKLEADYDKKLKESQTQDNITVRWD KKLKESQTQDNITVRWDLGLNKKRIAYFTL K L K V R W 0 1 1 1 0 2 1 0 0 1 1 1 0 0 0 1 2 0 0 1 0 0 13 1 1530.8002 Q92900 Q92900 320 332 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 0.00082564 79.659 By MS/MS By MS/MS By MS/MS 1 3 1 0.90564 0.88092 7.6266 5 Median 0.8934 0.92597 NaN 1 0 Median 0.93878 0.88092 8.8775 3 2 Median NaN NaN NaN 0 0 Median 0.90564 0.87033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15145000 8097700 7047400 1922300 1036600 885760 12276000 6507500 5768300 0 0 0 947040 553690 393350 0 0 0 0 0 0 20722 3564 21609 108771;108772;108773;108774;108775 110099;110100;110101;110102;110103;110104;110105 110104 7 LKETAEEEKDDLEER LLNQQIQEELSRVTKLKETAEEEKDDLEER LKETAEEEKDDLEERLMNQLAELNGSIGNY K L K E R L 1 1 0 2 0 0 6 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 15 2 1832.864 Q14789 Q14789 1911 1925 GOLGB1 Golgin subfamily B member 1 yes yes 3;4 1.2983E-06 88.73 By MS/MS By MS/MS 2 1 1.2129 1.2923 14.63 3 Plateau 0.92208 1.0035 0.64213 2 0 Median 1.2133 1.2927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15033000 7086700 7946400 6293700 2918600 3375100 8739300 4168100 4571200 0 0 0 0 0 0 0 0 0 0 0 0 20723 2900 21610 108776;108777;108778 110106;110107;110108;110109;110110 110110 5 LKETAESVLK RNFTTEQVTAMLLSKLKETAESVLKKPVVD MLLSKLKETAESVLKKPVVDCVVSVPCFYT K L K L K K 1 0 0 0 0 0 2 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 10 1 1116.639 P34932;A0A087WYC1;A0A087WTS8 P34932 125 134 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.00054651 132.01 By MS/MS By MS/MS By MS/MS 1 3 1 1.1601 1.112 15.207 5 Median 1.164 1.2182 NaN 1 0 Median 1.1601 1.0685 16.941 3 0 Plateau NaN NaN NaN 0 0 Median 1.1674 1.112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63423000 29364000 34059000 13013000 6238100 6774500 48090000 22111000 25979000 0 0 0 2320100 1014300 1305800 0 0 0 0 0 0 20724 2230 21611 108779;108780;108781;108782;108783 110111;110112;110113;110114;110115;110116;110117 110115 7 LKETCVSGEDPTQGADLSPDEK DAEPQEAEPAKELVKLKETCVSGEDPTQGA GEDPTQGADLSPDEKVLSKPPEGVVSEVEM K L K E K V 1 0 0 3 1 1 3 2 0 0 2 2 0 0 2 2 2 0 0 1 0 0 22 1 2375.0798 Q02952 Q02952 466 487 AKAP12 A-kinase anchor protein 12 yes yes 3 1.333E-12 75.3 By MS/MS 1 0.7599 0.72573 NaN 1 Median NaN NaN NaN 0 0 Median 0.7599 0.72573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12580000 7102300 5478200 0 0 0 12580000 7102300 5478200 0 0 0 0 0 0 0 0 0 0 0 0 20725 2705 21612 108784 110118 110118 1 LKETEPVEAYVIQK KDIKPQLELIEDEEKLKETEPVEAYVIQKE KLKETEPVEAYVIQKEREVTKGPAESPDEG K L K Q K E 1 0 0 0 0 1 3 0 0 1 1 2 0 0 1 0 1 0 1 2 0 0 14 1 1645.8927 P46821 P46821 867 880 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 4.3762E-05 79.466 By MS/MS By MS/MS 1 3 1.4323 1.3644 24.395 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5523 1.7601 NaN 1 0 Median 1.2344 1.2143 16.483 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16595000 7003000 9592200 0 0 0 0 0 0 10313000 3948200 6364800 6282200 3054800 3227400 0 0 0 0 0 0 20726 2347 21613 108785;108786;108787;108788 110119;110120;110121;110122;110123;110124 110123 6 LKETGYVVERPSTTK GNRESDGFREEKNYKLKETGYVVERPSTTK LKETGYVVERPSTTKDKHKEEDKNSERITV K L K T K D 0 1 0 0 0 0 2 1 0 0 1 2 0 0 1 1 3 0 1 2 0 0 15 2 1706.9203 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 461 475 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3;4 0.00019027 48.177 By MS/MS By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 5 5 3 0.89885 0.96896 20.58 17 Median 0.6426 0.7304 13.464 2 0 Median 0.77131 0.7898 21.093 2 0 Median 0.77814 0.96939 NaN 1 0 Median 1.0699 1.0838 7.6528 5 0 Median 0.82225 0.96896 20.336 5 1 Median 0.80863 0.80245 19.668 2 0 Median 68984000 37124000 31860000 5469900 3247700 2222200 5672800 2996600 2676200 845110 512830 332280 6012800 2715100 3297800 45808000 24969000 20839000 5175000 2682200 2492800 20727 4175 21614 108789;108790;108791;108792;108793;108794;108795;108796;108797;108798;108799;108800;108801;108802;108803;108804;108805;108806 110125;110126;110127;110128;110129;110130;110131;110132;110133;110134;110135;110136;110137;110138;110139 110134 15 LKETIDNNSVSSPLQSLQQR ILMQNWDAAMEDLTRLKETIDNNSVSSPLQ DNNSVSSPLQSLQQRTWLIHWSLFVFFNHP R L K Q R T 0 1 2 1 0 3 1 0 0 1 3 1 0 0 1 4 1 0 0 1 0 0 20 1 2256.171 P60228;E5RGA2;E5RHS5;H0YAW4 P60228 192 211 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 3 1.7718E-15 86.8 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.97013 0.93281 10.759 4 Median 0.77811 0.77473 NaN 1 0 Median 0.99087 0.90327 NaN 1 0 Median 0.94983 0.96332 NaN 1 1 Median 1.0236 0.98226 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34558000 17641000 16916000 18868000 10109000 8759300 610570 283430 327140 11249000 5515700 5733300 3829700 1733400 2096300 0 0 0 0 0 0 20728 2524 21615 108807;108808;108809;108810 110140;110141;110142 110141 3 LKETVYNLREENR KYLQLQQEKEQELSKLKETVYNLREENRQL SKLKETVYNLREENRQLRKAHQDIHTQLQD K L K N R Q 0 2 2 0 0 0 3 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 13 2 1662.8689 O00461;F8W785 O00461 171 183 GOLIM4 Golgi integral membrane protein 4 yes no 3 0.065689 13.404 By MS/MS 1 1.7692 1.9055 NaN 1 Median 1.7692 1.9055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2111200 666510 1444700 2111200 666510 1444700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20729 1466 21616 108811 110143 110143 1 LKETYEALLAR SLLEKRRQLSRDIGRLKETYEALLARFPNL DIGRLKETYEALLARFPNLRFAYKDPEKNW R L K A R F 2 1 0 0 0 0 2 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 11 1 1305.7293 O95347 O95347 492 502 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 5.1592E-05 118.18 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 3 2 1.092 1.1401 21.824 13 Median 1.2435 1.2957 13.836 2 0 Median 1.1681 1.1067 21.693 2 0 Median 1.0581 1.2003 15.245 2 0 Median 1.0509 1.0099 2.39 2 0 Median 1.5184 1.7199 24.284 3 0 Median 1.0665 0.93633 2.7606 2 0 Median 113630000 51824000 61810000 25667000 11055000 14612000 4344500 2007100 2337400 55483000 26189000 29294000 15740000 7452100 8287500 10897000 4468100 6428900 1502700 652640 850080 20730 1766 21617 108812;108813;108814;108815;108816;108817;108818;108819;108820;108821;108822;108823;108824 110144;110145;110146;110147;110148;110149;110150;110151;110152;110153;110154 110147 11 LKEVFSMAGVVVR TVFVANLDYKVGWKKLKEVFSMAGVVVRAD KKLKEVFSMAGVVVRADILEDKDGKSRGIG K L K V R A 1 1 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 4 0 0 13 1 1433.8065 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0QZM1 A0A087X0X3 220 232 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2;3 5.5528E-05 91.855 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 4 6 7 5 1.0497 1.0412 32.929 26 Median 1.1884 1.2121 18.49 2 0 Median 0.83796 0.80474 39.297 2 0 Median 1.0915 1.1989 48.63 4 0 Median 1.2254 1.186 43.824 6 0 Median 0.88031 0.96884 17.953 7 0 Median 1.3552 1.2503 19.591 5 0 Median 163830000 84093000 79738000 5267500 2375200 2892300 3784300 1821400 1962900 24484000 12250000 12234000 2490600 942750 1547900 124600000 65326000 59270000 3209300 1377400 1831800 20731 116;1423 21618;21619 108825;108826;108827;108828;108829;108830;108831;108832;108833;108834;108835;108836;108837;108838;108839;108840;108841;108842;108843;108844;108845;108846;108847;108848;108849;108850 110155;110156;110157;110158;110159;110160;110161;110162;110163;110164;110165;110166;110167;110168 110157 46 14 LKEVLEYNAIGGK EDEMGHPEIGDAIARLKEVLEYNAIGGKYN ARLKEVLEYNAIGGKYNRGLTVVVAFRELV R L K G K Y 1 0 1 0 0 0 2 2 0 1 2 2 0 0 0 0 0 0 1 1 0 0 13 1 1432.7926 P14324;A0A087X1D8;A0A087WVN4 P14324 111 123 FDPS Farnesyl pyrophosphate synthase yes no 2;3 3.1939E-10 130.94 By MS/MS By MS/MS By MS/MS 5 2 2 1.1695 1.098 14.981 8 Median 1.13 1.098 13.196 4 0 Median 1.3397 1.2061 19.052 2 1 Median 1.1088 1.1618 21.199 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131030000 52319000 78713000 91036000 35822000 55215000 32351000 13322000 19030000 7644400 3175900 4468500 0 0 0 0 0 0 0 0 0 20732 2002 21620 108851;108852;108853;108854;108855;108856;108857;108858;108859 110169;110170;110171;110172;110173;110174;110175;110176;110177 110172 9 LKEVVLQVEEERR ERILSGKLVRRAEKRLKEVVLQVEEERRVA KRLKEVVLQVEEERRVADQLRDQLEKGNLR R L K R R V 0 2 0 0 0 1 4 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 13 2 1625.9101 Q7Z406;A1L2Z2 Q7Z406 1868 1880 MYH14 Myosin-14 yes no 3 0.0013625 41.644 By MS/MS 1 1.1652 1.322 NaN 1 Median NaN NaN NaN 0 0 Median 1.1652 1.322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3524500 1648100 1876400 0 0 0 3524500 1648100 1876400 0 0 0 0 0 0 0 0 0 0 0 0 20733 3242 21621 108860 110178 110178 1 LKEYEAAVEQLK AQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ QSKLKEYEAAVEQLKSEQIRAQAEERRKTL K L K L K S 2 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 12 1 1419.7609 H0Y2W2;Q5T9A4 H0Y2W2 79 90 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B no no 2 6.2567E-07 123.8 By MS/MS 1 1.6823 1.5687 NaN 1 Median 1.6823 1.5687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27562000 9976500 17585000 27562000 9976500 17585000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20734 1140;3098 21622 108861 110179 110179 1 LKEYEAAVEQLKSEQIR AQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ EYEAAVEQLKSEQIRAQAEERRKTLSEETR K L K I R A 2 1 0 0 0 2 4 0 0 1 2 2 0 0 0 1 0 0 1 1 0 0 17 2 2033.0793 H0Y2W2;Q5T9A4 H0Y2W2 79 95 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B no no 3 8.8447E-06 56.799 By MS/MS By matching 1 1 1.247 1.3877 6.4843 2 Median 1.2244 1.3255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.27 1.4528 NaN 1 0 Median NaN NaN NaN 0 0 Median 37063000 17788000 19275000 32683000 15592000 17091000 0 0 0 0 0 0 0 0 0 4380000 2195800 2184200 0 0 0 20735 1140;3098 21623 108862;108863 110180 110180 1 LKFGTDLNQGEK MLEYALKQERAKYHKLKFGTDLNQGEKKAD YHKLKFGTDLNQGEKKADVSEQVSNGPVES K L K E K K 0 0 1 1 0 1 1 2 0 0 2 2 0 1 0 0 1 0 0 0 0 0 12 1 1348.6987 F5GYK2;Q9NRL3;M0R0P4;M0R2A7;M0QYS2;M0QXN2;M0R0W8 F5GYK2 16 27 STRN4 Striatin-4 yes no 2 0.018896 63.816 By MS/MS 2 0.010297 0.008017 311.69 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.010297 0.008017 311.69 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143190000 141390000 1795700 0 0 0 0 0 0 0 0 0 143190000 141390000 1795700 0 0 0 0 0 0 20736 1011 21624 108864;108865 110181;110182 110181 2 LKGALMLENLQK RGLAKSGQKSALVKRLKGALMLENLQKHST VKRLKGALMLENLQKHSTPHAAFQPNSQIG R L K Q K H 1 0 1 0 0 1 1 1 0 0 4 2 1 0 0 0 0 0 0 0 0 0 12 1 1356.7799 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 44 55 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 0.0015133 42.809 By MS/MS 1 0.94153 1.012 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94153 1.012 NaN 1 0 Median NaN NaN NaN 0 0 Median 6678000 3328000 3350000 0 0 0 0 0 0 0 0 0 0 0 0 6678000 3328000 3350000 0 0 0 20737 4560 21625 108866 110183 110183 1 LKGDDLQAIK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ SKSGKLKGDDLQAIKKELTQIKQKVDSLLE K L K I K K 1 0 0 2 0 1 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1099.6237 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1 B2R5W2 175 184 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 0.0018014 80.231 By matching By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1 0.99646 1.007 9.2136 8 Median 0.83246 0.86375 NaN 1 0 Median 0.91616 0.88534 NaN 1 0 Median 1.0211 1.0903 4.1129 2 0 Median 1.1828 1.0533 NaN 1 0 Median 0.94667 1.007 4.6748 2 0 Median 1.1278 0.95332 NaN 1 0 Median 60625000 30632000 29992000 957930 601090 356840 978940 447100 531840 8631700 4200400 4431200 2408200 1122800 1285400 26633000 14329000 12304000 21015000 9931900 11083000 20738 582 21626 108867;108868;108869;108870;108871;108872;108873;108874 110184;110185;110186;110187;110188;110189 110185 6 LKGDDLQAIKK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K L K K K E 1 0 0 2 0 1 0 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1227.7187 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7 B2R5W2 175 185 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2;3 4.1273E-05 119.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 14 10 1.1033 1.1465 17.019 32 Median 1.3839 1.419 NaN 1 0 Median 1.1719 1.1623 9.0658 2 0 Median 0.98831 1.1154 7.4268 3 0 Median 1.2201 1.1495 3.0454 3 0 Median 1.0211 1.1199 21.606 13 0 Median 1.2376 1.1392 14.587 10 0 Median 1107100000 526260000 580850000 825610 342340 483270 6416700 2757300 3659400 38904000 19045000 19860000 27494000 12150000 15344000 890930000 428620000 462310000 142540000 63345000 79193000 20739 582 21627 108875;108876;108877;108878;108879;108880;108881;108882;108883;108884;108885;108886;108887;108888;108889;108890;108891;108892;108893;108894;108895;108896;108897;108898;108899;108900;108901;108902;108903;108904;108905;108906;108907 110190;110191;110192;110193;110194;110195;110196;110197;110198;110199;110200;110201;110202;110203;110204;110205;110206;110207;110208;110209;110210;110211;110212;110213;110214;110215;110216;110217;110218;110219;110220;110221;110222;110223;110224;110225;110226;110227;110228 110224 39 LKGDVDVSGPK KISMPEIDLNLKGSKLKGDVDVSGPKLEGD KGSKLKGDVDVSGPKLEGDIKAPSLDIKGP K L K P K L 0 0 0 2 0 0 0 2 0 0 1 2 0 0 1 1 0 0 0 2 0 0 11 1 1113.603 Q09666 Q09666 3307 3317 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0073711 58.37 By MS/MS By matching By matching By MS/MS By matching 3 2 2 2 1 1.0972 1.1271 16.031 10 Median 1.1215 1.0488 12.298 3 0 Median 1.3241 1.2806 31.89 2 0 Median 0.98747 1.1271 3.8726 2 0 Median 1.1798 1.1606 22.979 2 0 Median 1.1482 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median 22234000 10697000 11537000 3231200 1686800 1544400 4663300 2123900 2539400 4613600 2256900 2356700 8403500 4034100 4369400 1322400 595390 727030 0 0 0 20740 2749 21628 108908;108909;108910;108911;108912;108913;108914;108915;108916;108917 110229;110230;110231 110230 3 LKGDVDVSGPKLEGDIK KISMPEIDLNLKGSKLKGDVDVSGPKLEGD GDVDVSGPKLEGDIKAPSLDIKGPEVDVSG K L K I K A 0 0 0 3 0 0 1 3 0 1 2 3 0 0 1 1 0 0 0 2 0 0 17 2 1768.9571 Q09666 Q09666 3307 3323 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00092005 34.748 By MS/MS 1 0.79284 0.93652 NaN 1 Median 0.79284 0.93652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10955000 5660600 5294100 10955000 5660600 5294100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20741 2749 21629 108918 110232 110232 1 LKGEATVSFDDPPSAK GQPMINLYTDRETGKLKGEATVSFDDPPSA KGEATVSFDDPPSAKAAIDWFDGKEFSGNP K L K A K A 2 0 0 2 0 0 1 1 0 0 1 2 0 1 2 2 1 0 0 1 0 0 16 1 1660.8308 H3BPE7;P35637 H3BPE7 334 349 FUS RNA-binding protein FUS yes no 2;3 1.1969E-09 140.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 7 9 5 5 0.79256 0.7667 21.749 33 Median 0.64992 0.60093 26.979 5 0 Median 0.83211 0.76348 12.356 2 0 Median 1.0931 1.1599 25.798 7 0 Median 0.84438 0.80201 13.737 9 0 Median 0.66469 0.74312 12.553 5 1 Median 0.86025 0.7667 10.508 5 0 Median 1104200000 618290000 485910000 134230000 79151000 55076000 20401000 10410000 9990800 502590000 284870000 217720000 254530000 133450000 121080000 156910000 90991000 65915000 35543000 19412000 16131000 20742 1221 21630 108919;108920;108921;108922;108923;108924;108925;108926;108927;108928;108929;108930;108931;108932;108933;108934;108935;108936;108937;108938;108939;108940;108941;108942;108943;108944;108945;108946;108947;108948;108949;108950;108951 110233;110234;110235;110236;110237;110238;110239;110240;110241;110242;110243;110244;110245;110246;110247;110248;110249;110250;110251;110252;110253;110254;110255;110256;110257;110258;110259;110260;110261;110262;110263;110264;110265;110266;110267;110268;110269;110270;110271;110272;110273;110274;110275;110276;110277;110278;110279;110280;110281;110282;110283;110284;110285;110286;110287;110288;110289;110290;110291;110292;110293;110294;110295;110296;110297;110298;110299;110300 110277 68 LKGELESSDQVR KSRVTVKHLEEIVEKLKGELESSDQVREHT VEKLKGELESSDQVREHTSHLEAELEKHMA K L K V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 12 1 1359.6994 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1184 1195 RRBP1 Ribosome-binding protein 1 yes no 2;3 2.3499E-05 114.83 By MS/MS By MS/MS By MS/MS 2 4 2 1.0127 1.0119 31.712 8 Median 0.97362 1.0039 3.5335 2 0 Median 0.98523 0.93302 47.428 4 0 Median NaN NaN NaN 0 0 Median 1.1446 1.0986 14.035 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26673000 12837000 13837000 4560900 2218900 2342000 17090000 7940700 9149000 0 0 0 5022600 2677000 2345600 0 0 0 0 0 0 20743 4222 21631 108952;108953;108954;108955;108956;108957;108958;108959 110301;110302;110303;110304;110305;110306;110307;110308;110309 110307 9 LKGEMMDLQHGSLFLQTPK SLADELALVDVLEDKLKGEMMDLQHGSLFL MMDLQHGSLFLQTPKIVADKDYSVTANSKI K L K P K I 0 0 0 1 0 2 1 2 1 0 4 2 2 1 1 1 1 0 0 0 0 0 19 1 2172.1071 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 59 77 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 3;4 9.3832E-07 54.288 By MS/MS By matching By MS/MS By matching 6 1 1 3 0.9689 0.93316 14.658 11 Median 0.99256 0.95877 5.0519 6 0 Median 1.0428 0.93825 NaN 1 0 Median 1.0095 1.0544 NaN 1 0 Median 0.8885 0.78017 14.277 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 217600000 107230000 110370000 156150000 77386000 78767000 49351000 23714000 25637000 11032000 5636200 5395800 1059500 490370 569110 0 0 0 0 0 0 20744 1880 21632;21633 108960;108961;108962;108963;108964;108965;108966;108967;108968;108969;108970 110310;110311;110312;110313;110314;110315 110314 647;648 6 LKGEMMDLQHGSLFLR DLADELALVDVIEDKLKGEMMDLQHGSLFL KGEMMDLQHGSLFLRTPKIVSGKDYNVTAN K L K L R T 0 1 0 1 0 1 1 2 1 0 4 1 2 1 0 1 0 0 0 0 0 0 16 1 1873.9543 P00338;F5GYU2;F5GXY2;F5GXH2;F5H5J4;F5H6W8 P00338 58 73 LDHA L-lactate dehydrogenase A chain yes no 2;3;4 9.2518E-36 214.47 By MS/MS By matching By MS/MS By matching 9 2 3 1 1.2204 1.2375 12.578 15 Median 1.2295 1.2594 7.6983 9 0 Median 1.14 1.0441 15.352 2 0 Median 1.2204 1.3264 11.085 3 0 Median 1.0251 0.96735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 293410000 128970000 164440000 261990000 114770000 147230000 2499500 1221000 1278500 28016000 12547000 15469000 904300 438690 465610 0 0 0 0 0 0 20745 1813 21634;21635;21636 108971;108972;108973;108974;108975;108976;108977;108978;108979;108980;108981;108982;108983;108984;108985 110316;110317;110318;110319;110320;110321;110322;110323;110324;110325;110326;110327;110328 110322 581;582 13 LKGIVPLAK HCKRLAPEYEAAATRLKGIVPLAKVDCTAN EAAATRLKGIVPLAKVDCTANTNTCNKYGV R L K A K V 1 0 0 0 0 0 0 1 0 1 2 2 0 0 1 0 0 0 0 1 0 0 9 1 937.63244 P30101;H7BZJ3 P30101 74 82 PDIA3 Protein disulfide-isomerase A3 no no 2 0.027401 56.547 By MS/MS By matching 3 1 1.0814 1.0146 12.837 4 Median 1.0286 0.96328 14.468 3 0 Median 1.1369 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17718000 9387400 8330700 14816000 7946200 6869500 2902300 1441100 1461200 0 0 0 0 0 0 0 0 0 0 0 0 20746 2189;1251 21637 108986;108987;108988;108989 110329 110329 1 LKGLALQR LIKTKQDEVNAAWQRLKGLALQRQGKLFGA VNAAWQRLKGLALQRQGKLFGAAEVQRFNR R L K Q R Q 1 1 0 0 0 1 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 897.57599 A0A0D9SF54;Q13813 Q13813 240 247 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.016994 86.866 By matching By MS/MS By MS/MS By matching 2 1 1 1 1.2814 1.3288 9.1015 5 Median 1.3724 1.3961 2.7665 2 0 Median NaN NaN NaN 0 0 Median 1.0661 1.2781 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1726 1.3288 NaN 1 0 Median 1.2814 1.123 NaN 1 0 Median 20719000 9721600 10998000 3436000 1381000 2055100 0 0 0 9221900 4774400 4447500 0 0 0 7225900 3180600 4045200 835580 385580 450000 20747 264;2838 21638 108990;108991;108992;108993;108994 110330;110331;110332 110330 3 LKGLLQSGQIPGR KNAIANASTLAEVERLKGLLQSGQIPGRER ERLKGLLQSGQIPGRERRSGPTDDGEEEME R L K G R E 0 1 0 0 0 2 0 3 0 1 3 1 0 0 1 1 0 0 0 0 0 0 13 1 1365.8092 P09661;H0YMA0;H0YLR3 P09661 220 232 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 0.00018594 93.096 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 0.9841 0.91831 41.952 7 Median 1.5196 1.5924 NaN 1 1 Median 0.9841 0.91831 NaN 1 1 Median 1.0296 1.0732 25.912 2 1 Median 1.1956 1.0583 NaN 1 0 Median 0.58228 0.61824 55.717 2 1 Median NaN NaN NaN 0 0 Median 96231000 54160000 42071000 5743900 2209000 3534900 2329500 1198700 1130800 18395000 9352200 9042500 4149100 1994500 2154700 65614000 39406000 26208000 0 0 0 20748 1920 21639 108995;108996;108997;108998;108999;109000;109001 110333;110334;110335;110336;110337;110338;110339;110340;110341 110341 9 LKGPQITGPSLEGDLGLK EVSVPSANIEGLEGKLKGPQITGPSLEGDL PQITGPSLEGDLGLKGAKPQGHIGVDASAP K L K L K G 0 0 0 1 0 1 1 4 0 1 4 2 0 0 2 1 1 0 0 0 0 0 18 1 1822.02 Q09666 Q09666 370 387 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 5.7859E-12 128.22 By MS/MS By matching By MS/MS By matching By matching By matching 3 1 3 3 1 1 0.90358 0.92687 13.084 12 Median 0.8157 0.94672 9.7473 3 0 Plateau 0.93719 0.89298 NaN 1 0 Median 0.91739 1.039 14.839 3 0 Median 1.0336 1.0054 15.716 3 0 Plateau 0.91266 0.96593 NaN 1 0 Median 0.87302 0.80042 NaN 1 0 Median 80191000 37336000 42855000 43264000 21180000 22084000 5374800 2717500 2657400 26910000 11310000 15600000 2414800 1142300 1272500 2136600 930000 1206600 90385 55643 34742 20749 2749 21640 109002;109003;109004;109005;109006;109007;109008;109009;109010;109011;109012;109013 110342;110343;110344;110345;110346;110347;110348;110349 110344 8 LKGQVSQETLSEEASSQATLPNQPVEK QAEKVLEEVDWLITKLKGQVSQETLSEEAS EASSQATLPNQPVEKAIIMQLGTLLTFFHE K L K E K A 2 0 1 0 0 4 4 1 0 0 3 2 0 0 2 4 2 0 0 2 0 0 27 1 2897.4618 Q9NVI1 Q9NVI1 1106 1132 FANCI Fanconi anemia group I protein yes yes 3 4.5245E-20 71.506 By MS/MS By MS/MS By matching 1 1 1 0.71129 0.78414 27.42 3 Plateau 0.61209 0.64285 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82656 0.95648 NaN 1 0 Median 0.5934 0.56525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20540000 11567000 8973300 7090300 4230700 2859600 0 0 0 11613000 6323700 5289300 1836800 1012500 824370 0 0 0 0 0 0 20750 4132 21641 109014;109015;109016 110350;110351;110352 110351 3 LKGSGNLEAIHIIK HKDHFTKLAVEAVLRLKGSGNLEAIHIIKK RLKGSGNLEAIHIIKKLGGSLADSYLDEGF R L K I K K 1 0 1 0 0 0 1 2 1 3 2 2 0 0 0 1 0 0 0 0 0 0 14 1 1491.8773 P78371;F5GWF6;F8VQ14 P78371 190 203 CCT2 T-complex protein 1 subunit beta yes no 3 2.8468E-05 83.087 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1.2007 1.1413 28.222 7 Median 1.2047 1.1349 0.80444 2 0 Median 1.1643 1.0892 NaN 1 0 Median 1.2289 1.2838 NaN 1 0 Median 1.2007 1.2002 NaN 1 0 Median 2.0592 2.1974 NaN 1 1 Median 0.98908 0.88153 NaN 1 0 Median 93118000 41216000 51902000 48693000 22146000 26547000 16463000 7357600 9105300 9781000 4557800 5223200 2267000 1189000 1078000 7729300 2058000 5671300 8185100 3907200 4277900 20751 2644 21642 109017;109018;109019;109020;109021;109022;109023 110353;110354;110355;110356;110357;110358;110359;110360;110361 110354 9 LKGSGNLEAIHIIKK HKDHFTKLAVEAVLRLKGSGNLEAIHIIKK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL R L K K K L 1 0 1 0 0 0 1 2 1 3 2 3 0 0 0 1 0 0 0 0 0 0 15 2 1619.9723 P78371;F5GWF6;F8VQ14 P78371 190 204 CCT2 T-complex protein 1 subunit beta yes no 3;4 0.0053163 26.771 By MS/MS By matching 3 2 1.2922 1.2657 19.481 5 Median 1.3601 1.3839 10.494 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0565 1.0349 28.472 2 0 Median 15833000 6785700 9047400 11930000 4995800 6934600 0 0 0 0 0 0 0 0 0 0 0 0 3902700 1789900 2112800 20752 2644 21643 109024;109025;109026;109027;109028 110362;110363;110364 110362 3 LKGTVGEPTYDAEFQHFLR HQDHITFAMLLARIKLKGTVGEPTYDAEFQ VGEPTYDAEFQHFLRGNEIVLSAGSTPRIQ K L K L R G 1 1 0 1 0 1 2 2 1 0 2 1 0 2 1 0 2 0 1 1 0 0 19 1 2207.1011 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 3892 3910 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 9.3724E-21 107.57 By MS/MS By matching By MS/MS 3 1 3 0.90167 0.99116 9.1686 7 Median 0.94653 0.99116 5.9755 3 1 Median 0.85131 0.83032 NaN 1 0 Median 0.89385 1.0353 9.294 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71655000 36123000 35532000 44818000 22142000 22676000 940210 396840 543370 25897000 13584000 12313000 0 0 0 0 0 0 0 0 0 20753 2865 21644 109029;109030;109031;109032;109033;109034;109035 110365;110366;110367;110368;110369;110370 110367 6 LKGTVLPVATIQNASTAMLMAASVAR EGPKVVSVQLGDGTRLKGTVLPVATIQNAS QNASTAMLMAASVARKAVVLPGGTATSPKM R L K A R K 6 1 1 0 0 1 0 1 0 1 3 1 2 0 1 2 3 0 0 3 0 0 26 1 2613.4346 Q8N1G0;F8WCX2 Q8N1G0 396 421 ZNF687 Zinc finger protein 687 yes no 3 0.041123 11.417 By MS/MS 1 0.87463 1.0013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87463 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 708020 368640 339380 0 0 0 0 0 0 708020 368640 339380 0 0 0 0 0 0 0 0 0 20754 3357 21645 109036 110371 110371 1 LKGYLISGSSYAR LGKLTLIDPETLLPRLKGYLISGSSYARSS PRLKGYLISGSSYARSSVVTAVKFTISDHP R L K A R S 1 1 0 0 0 0 0 2 0 1 2 1 0 0 0 3 0 0 2 0 0 0 13 1 1413.7616 Q86VP6;A0A0C4DGH5 Q86VP6 970 982 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 2.1034E-06 108.47 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.0864 1.1358 8.9429 6 Median 1.0898 1.1358 0.083315 2 0 Median 1.0304 0.97223 NaN 1 0 Median 1.0681 1.2118 1.9682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1858 1.0298 NaN 1 0 Median 102350000 47894000 54452000 30289000 13384000 16905000 3001300 980310 2021000 66494000 32375000 34118000 0 0 0 0 0 0 2562800 1154300 1408600 20755 3288 21646 109037;109038;109039;109040;109041;109042 110372;110373;110374;110375;110376;110377;110378;110379;110380 110378 9 LKHEDTNLASSTIVK LSDNREKRGLALDGKLKHEDTNLASSTIVK LKHEDTNLASSTIVKEGANKEVLGILVSYR K L K V K E 1 0 1 1 0 0 1 0 1 1 2 2 0 0 0 2 2 0 0 1 0 0 15 1 1654.889 P32121;Q68DZ5 P32121 294 308 ARRB2;DKFZp686L0365 Beta-arrestin-2 yes no 3 0.011159 24.784 By MS/MS By matching By MS/MS By MS/MS 1 1 3 2 1.1485 1.2515 20.203 7 Median 0.98843 1.0683 NaN 1 0 Median 1.8191 1.7317 NaN 1 0 Median 1.0074 1.0554 14.79 3 0 Median 1.422 1.3078 3.2201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25308000 11287000 14021000 1486700 860400 626340 3798100 1215100 2583100 10777000 5605500 5171300 9246000 3606100 5639900 0 0 0 0 0 0 20756 2216 21647 109043;109044;109045;109046;109047;109048;109049 110381;110382;110383 110383 3 LKHEDTNLASSTLLR LANNREKRGLALDGKLKHEDTNLASSTLLR LKHEDTNLASSTLLREGANREILGIIVSYK K L K L R E 1 1 1 1 0 0 1 0 1 0 4 1 0 0 0 2 2 0 0 0 0 0 15 1 1696.9108 P49407;H0YET9 P49407 293 307 ARRB1 Beta-arrestin-1 yes no 3 5.5888E-05 76.01 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 1.1184 1.0524 17.916 6 Median 1.0198 1.0175 NaN 1 0 Median 1.1917 1.0885 NaN 1 0 Median 1.0554 1.1206 38.759 2 0 Median 1.1184 1.0586 5.643 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51682000 24875000 26808000 7433200 3717000 3716200 3280200 1789800 1490400 20653000 10723000 9929600 20316000 8644300 11671000 0 0 0 0 0 0 20757 2381 21648 109050;109051;109052;109053;109054;109055 110384;110385;110386;110387;110388;110389;110390;110391 110387 8 LKHILILQNK QPQTSEHLAAIEIMKLKHILILQNKIDLVK IEIMKLKHILILQNKIDLVKESQAKEQYEQ K L K N K I 0 0 1 0 0 1 0 0 1 2 3 2 0 0 0 0 0 0 0 0 0 0 10 1 1218.7812 P41091;Q2VIR3 P41091 182 191 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.00018912 73.067 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 5 1 1.416 1.2545 43.315 11 Median 1.2543 1.2103 5.0727 2 0 Median 4.4772 4.2207 NaN 1 0 Median 1.5831 1.6713 5.4501 2 0 Median 1.0787 1.0246 21.733 5 0 Median NaN NaN NaN 0 0 Median 1.7785 1.5851 NaN 1 0 Median 25607000 10909000 14698000 5586200 2285300 3300900 1062000 171530 890510 2835900 1172500 1663400 15427000 7062200 8365200 0 0 0 695200 217620 477580 20758 2295 21649 109056;109057;109058;109059;109060;109061;109062;109063;109064;109065;109066 110392;110393;110394;110395;110396;110397;110398 110396 7 LKHLNLGMNR NQIEELPTQISSLQKLKHLNLGMNRLNTLP SSLQKLKHLNLGMNRLNTLPRGFGSLPALE K L K N R L 0 1 2 0 0 0 0 1 1 0 3 1 1 0 0 0 0 0 0 0 0 0 10 1 1194.6655 Q15404 Q15404 88 97 RSU1 Ras suppressor protein 1 yes yes 3 0.004936 52.79 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1039400 0 1039400 0 0 0 0 0 0 0 0 0 1039400 0 1039400 0 0 0 0 0 0 20759 2949 21650 109067;109068 110399;110400 110399 2 LKHLVDEPQNLIK AKDDPHACYSTVFDKLKHLVDEPQNLIKQN DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ K L K I K Q 0 0 1 1 0 1 1 0 1 1 3 2 0 0 1 0 0 0 0 1 0 0 13 1 1545.8879 CON__P02769 CON__P02769 400 412 yes yes 3 0.0014987 57.106 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13891000 13891000 0 13891000 13891000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20760 746 21651 109069 110401 110401 1 LKHYGPGWVSMANAGK GKSIYGERFPDENFKLKHYGPGWVSMANAG KHYGPGWVSMANAGKDTNGSQFFITTVKTA K L K G K D 2 0 1 0 0 0 0 3 1 0 1 2 1 0 1 1 0 1 1 1 0 0 16 1 1714.8613 P23284 P23284 130 145 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3;4 4.1875E-05 53.403 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 3 2 1.0139 1.0389 18.253 12 Median 0.82703 0.84052 18.451 2 0 Median 1.2181 1.1141 24.903 3 1 Median 0.96893 0.96435 0.64904 2 0 Median 1.3381 1.206 0.93879 3 1 Median 0.87353 0.96458 20.74 2 0 Median NaN NaN NaN 0 0 Median 113810000 55705000 58109000 33382000 16727000 16655000 6387800 3150000 3237800 46636000 24035000 22601000 24011000 10087000 13924000 3398200 1706200 1692000 0 0 0 20761 2109 21652;21653 109070;109071;109072;109073;109074;109075;109076;109077;109078;109079;109080;109081 110402;110403;110404;110405;110406;110407;110408;110409;110410;110411;110412;110413 110406 878 12 LKIETAQELK LAANGIQRNTLNIDKLKIETAQELKNAEIA LNIDKLKIETAQELKNAEIALRTQKTPPGL K L K L K N 1 0 0 0 0 1 2 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1171.6812 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 258 267 NUPL1 Nucleoporin p58/p45 yes no 2 0.0029047 94.692 By MS/MS By MS/MS By matching 1 1 1 1.0663 1.1931 15.009 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0663 1.1931 NaN 1 0 Median 1.3345 1.2322 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0506 0.93635 NaN 1 0 Median 11310000 4972700 6337400 0 0 0 0 0 0 8169400 3650000 4519400 2161700 864360 1297300 0 0 0 979080 458350 520730 20762 1247 21654 109082;109083;109084 110414;110415;110416 110416 3 LKIPEGLFDPSNVK YEFPNGYNCDFGAERLKIPEGLFDPSNVKG RLKIPEGLFDPSNVKGLSGNTMLGVSHVVT R L K V K G 0 0 1 1 0 0 1 1 0 1 2 2 0 1 2 1 0 0 0 1 0 0 14 1 1555.861 O96019 O96019 302 315 ACTL6A Actin-like protein 6A yes yes 2;3 0.0060447 45.973 By MS/MS By matching By matching 3 2 1 0.74185 0.75916 15.43 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63868 0.67728 2.0833 3 0 Median 0.89163 0.84689 3.0496 2 0 Median 0.8317 0.96942 NaN 1 0 Median NaN NaN NaN 0 0 Median 43086000 24615000 18471000 0 0 0 0 0 0 17173000 11116000 6057900 25231000 13098000 12133000 682280 402230 280040 0 0 0 20763 1809 21655 109085;109086;109087;109088;109089;109090 110417;110418;110419 110417 3 LKITGNMGLAMK MTGKMNPQSAFFQGKLKITGNMGLAMKLQN QGKLKITGNMGLAMKLQNLQLQPGNAKL__ K L K M K L 1 0 1 0 0 0 0 2 0 1 2 2 2 0 0 0 1 0 0 0 0 0 12 1 1275.7043 P22307 P22307 523 534 SCP2 Non-specific lipid-transfer protein yes yes 2;3 0.0016912 54.608 By MS/MS By MS/MS 3 1 1.2239 1.1461 7.7076 4 Median 1.2223 1.1447 8.5064 3 0 Median 1.3458 1.1666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36729000 15924000 20805000 33531000 14584000 18947000 3198000 1340000 1858000 0 0 0 0 0 0 0 0 0 0 0 0 20764 2099 21656;21657 109091;109092;109093;109094 110420;110421;110422;110423;110424 110423 858;859 5 LKKEDIYAVEIVGGATR ARVEPPLRSVLEQTKLKKEDIYAVEIVGGA KEDIYAVEIVGGATRIPAVKEKISKFFGKE K L K T R I 2 1 0 1 0 0 2 2 0 2 1 2 0 0 0 0 1 0 1 2 0 0 17 2 1861.0309 P34932;A0A087WYC1;A0A087WTS8 P34932 330 346 HSPA4 Heat shock 70 kDa protein 4 yes no 2;3;4 2.6831E-11 139.3 By MS/MS 4 1.1648 1.3239 14.281 4 Median 1.1648 1.3239 14.281 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76256000 33123000 43133000 76256000 33123000 43133000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20765 2230 21658 109095;109096;109097;109098 110425;110426;110427;110428;110429 110427 5 LKKPILLEGSPGVGK GTTAMNAQRLLRATKLKKPILLEGSPGVGK LKKPILLEGSPGVGKTSLVGALAKASGNTL K L K G K T 0 0 0 0 0 0 1 3 0 1 3 3 0 0 2 1 0 0 0 1 0 0 15 2 1534.9447 Q9NU22 Q9NU22 1745 1759 MDN1 Midasin yes yes 3 0.00010618 63.682 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.83711 0.94991 23.566 6 Median 1.189 1.4044 NaN 1 0 Median 0.79591 0.82909 NaN 1 0 Median 0.69744 0.83648 24.855 2 0 Median 0.88258 0.97531 10.603 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63895000 35598000 28297000 4086300 1970900 2115300 13150000 6976700 6173600 42725000 24731000 17994000 3933000 1919300 2013700 0 0 0 0 0 0 20766 4112 21659 109099;109100;109101;109102;109103;109104 110430;110431;110432;110433;110434;110435 110430 6 LKKPPTDEELK SESEDSSDDEPLIKKLKKPPTDEELKETIK LIKKLKKPPTDEELKETIKKLLASANLEEV K L K L K E 0 0 0 1 0 0 2 0 0 0 2 3 0 0 2 0 1 0 0 0 0 0 11 2 1296.7289 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 316 326 DEK Protein DEK yes no 3 0.025112 24.254 By MS/MS By matching 1 2 0.65128 0.71553 12.502 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61002 0.71553 NaN 1 0 Median 0.70823 0.70932 17.667 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372200 1360100 1012100 0 0 0 0 0 0 1913100 1099300 813800 459080 260780 198300 0 0 0 0 0 0 20767 1166 21660 109105;109106;109107 110436;110437 110437 2 LKLDGLDEDGEKEAR ADLKIQERDELAWKKLKLDGLDEDGEKEAR LKLDGLDEDGEKEARLIRNLNVILAKYGLD K L K A R L 1 1 0 3 0 0 3 2 0 0 3 2 0 0 0 0 0 0 0 0 0 0 15 2 1686.8424 P30533;A0A3B3IRQ7 P30533 96 110 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 3 0.00039375 68.257 By MS/MS 1 1.7506 1.7512 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7506 1.7512 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3363800 1255300 2108600 0 0 0 0 0 0 0 0 0 3363800 1255300 2108600 0 0 0 0 0 0 20768 2196 21661 109108 110438 110438 1 LKLDVGEAMAPPSHR PDGSLQTGKPSAPKKLKLDVGEAMAPPSHR LKLDVGEAMAPPSHRKGDSNANSDVCAAAL K L K H R K 2 1 0 1 0 0 1 1 1 0 2 1 1 0 2 1 0 0 0 1 0 0 15 1 1619.8454 Q8IZL8;C9JFV4 Q8IZL8 497 511 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 3 0.0076233 37.177 By MS/MS 1 0.52761 0.5977 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52761 0.5977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6442500 4161100 2281400 0 0 0 0 0 0 6442500 4161100 2281400 0 0 0 0 0 0 0 0 0 20769 3351 21662 109109 110439 110439 1 LKLEAELGNMQGLVEDFK INNLRRQLETLGQEKLKLEAELGNMQGLVE EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L K F K N 1 0 1 1 0 1 3 2 0 0 4 2 1 1 0 0 0 0 0 1 0 0 18 1 2033.0503 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;H0YIB2 P05787 159 176 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 4.6471E-12 149.35 By matching By MS/MS By MS/MS By matching By matching By matching 2 7 7 4 1 9 1.1285 1.0962 31.346 30 Median 1.0205 0.98216 31.454 2 0 Median 1.2154 1.142 17.597 7 0 Median 1.0397 1.0803 10.555 7 0 Median 1.0972 1.0691 20.601 4 0 Median 1.1257 1.2014 NaN 1 0 Median 1.1523 1.0001 50.677 9 0 Median 255400000 119740000 135670000 8953300 4396100 4557200 53913000 22427000 31486000 176980000 85844000 91139000 3659200 1793600 1865600 1537700 705810 831930 10356000 4569200 5786500 + 20770 750 21663;21664 109110;109111;109112;109113;109114;109115;109116;109117;109118;109119;109120;109121;109122;109123;109124;109125;109126;109127;109128;109129;109130;109131;109132;109133;109134;109135;109136;109137;109138;109139 110440;110441;110442;110443;110444;110445;110446;110447;110448;110449;110450;110451;110452;110453;110454;110455;110456;110457 110445 273 18 LKLEAELGNMQGLVEDFKNK INNLRRQLETLGQEKLKLEAELGNMQGLVE ELGNMQGLVEDFKNKYEDEINKRTEMENEF K L K N K Y 1 0 2 1 0 1 3 2 0 0 4 3 1 1 0 0 0 0 0 1 0 0 20 2 2275.1882 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;H0YIB2 P05787 159 178 KRT8 Keratin, type II cytoskeletal 8 yes no 3 1.8316E-06 49.768 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2339 1.2961 22.733 4 Median NaN NaN NaN 0 0 Median 1.0897 1.0315 NaN 1 0 Median 0.94105 1.1038 NaN 1 0 Median 1.6912 1.6256 NaN 1 0 Median 1.3972 1.522 NaN 1 0 Median NaN NaN NaN 0 0 Median 17589000 7878100 9710700 0 0 0 1861200 750350 1110800 8979800 4543700 4436100 4002700 1758800 2243800 2745200 825180 1920000 0 0 0 + 20771 750 21665 109140;109141;109142;109143 110458;110459;110460;110461 110458 4 LKLEPHEGLLLR TQPGREEGSPLELERLKLEPHEGLLLRFPY LERLKLEPHEGLLLRFPYAA__________ R L K L R F 0 1 0 0 0 0 2 1 1 0 5 1 0 0 1 0 0 0 0 0 0 0 12 1 1416.8453 F5GZS6;J3KPF3;P08195;F5GZI0 F5GZS6 583 594 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 0.0096251 28.327 By MS/MS By MS/MS 1 2 0.70062 0.69331 47.263 3 Median 1.2685 1.3024 NaN 1 0 Median 0.62926 0.59833 20.836 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33925000 19613000 14312000 9525500 4344300 5181200 24399000 15268000 9130900 0 0 0 0 0 0 0 0 0 0 0 0 20772 1016 21666 109144;109145;109146 110462;110463;110464 110463 3 LKLEQIDGHIAEHNSK QENEHALQKDALSIKLKLEQIDGHIAEHNS KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L K S K I 1 0 1 1 0 1 2 1 2 2 2 2 0 0 0 1 0 0 0 0 0 0 16 1 1830.9588 Q9NTJ3;E9PD53 Q9NTJ3 1016 1031 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 2.685E-05 74.772 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1.0762 1.0579 26.473 10 Median 1.5024 1.5278 60.212 2 0 Median 1.0533 1.0223 7.5791 3 0 Median 1.0521 1.2144 2.8702 2 0 Median 1.1492 1.0792 5.4778 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62676000 28813000 33863000 19753000 9207600 10545000 9777600 4394600 5383000 18116000 8528800 9587000 15030000 6682300 8347200 0 0 0 0 0 0 20773 4108 21667 109147;109148;109149;109150;109151;109152;109153;109154;109155;109156 110465;110466;110467;110468;110469;110470;110471;110472;110473;110474;110475;110476 110470 12 LKLPAVVTADLR LKVEREIDGGLETLRLKLPAVVTADLRLNE TLRLKLPAVVTADLRLNEPRYATLPNIMKA R L K L R L 2 1 0 1 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 12 1 1294.7973 P38117;M0QY67 P38117 175 186 ETFB Electron transfer flavoprotein subunit beta yes no 2;3 0.00090177 68.893 By MS/MS By matching By MS/MS By matching 4 2 2 1 0.97828 0.97551 21.611 9 Median 0.87249 0.89615 7.5534 4 0 Median 1.3649 1.2723 10.552 2 0 Median 0.99637 1.0269 9.9656 2 0 Median 1.7839 1.5792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75975000 40217000 35757000 64062000 35243000 28819000 5514400 2285700 3228700 5922100 2516900 3405100 476300 171420 304880 0 0 0 0 0 0 20774 2272 21668 109157;109158;109159;109160;109161;109162;109163;109164;109165 110477;110478;110479;110480;110481;110482;110483 110477 7 LKLPSIPLVPVSAQK RMTRALMDSLGPEWRLKLPSIPLVPVSAQK LKLPSIPLVPVSAQKRWNSLPSENHKEMAK R L K Q K R 1 0 0 0 0 1 0 0 0 1 3 2 0 0 3 2 0 0 0 2 0 0 15 1 1588.9916 Q15785 Q15785 142 156 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2;3 0.019778 36.303 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 2 0.82489 0.80435 37.338 7 Median 0.84538 0.82423 3.4541 2 0 Median 2.1406 1.9606 NaN 1 0 Median 0.85117 0.89381 NaN 1 0 Median 0.81808 0.72846 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77847 0.67054 3.8795 2 0 Median 17320000 9343200 7976500 12615000 7014200 5601200 1747500 738030 1009400 1884700 1059500 825230 567900 263450 304460 0 0 0 504180 268010 236170 20775 2971 21669 109166;109167;109168;109169;109170;109171;109172 110484;110485;110486;110487;110488 110486 5 LKLSEELSGGR GRRLQRDLKRTVDARLKLSEELSGGRLKPK VDARLKLSEELSGGRLKPKPIDVQVITHHM R L K G R L 0 1 0 0 0 0 2 2 0 0 3 1 0 0 0 2 0 0 0 0 0 0 11 1 1187.651 B4DXW1;P61158 B4DXW1 296 306 ACTR3 Actin-related protein 3 yes no 2;3 0.00067009 93.111 By MS/MS 2 1.2293 1.1757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2293 1.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20696000 4616700 16080000 0 0 0 0 0 0 0 0 0 20696000 4616700 16080000 0 0 0 0 0 0 20776 607 21670 109173;109174 110489;110490;110491 110491 3 LKLSILYPATTGR PVTARVVFVFGPDKKLKLSILYPATTGRNF KKLKLSILYPATTGRNFDEILRVVISLQLT K L K G R N 1 1 0 0 0 0 0 1 0 1 3 1 0 0 1 1 2 0 1 0 0 0 13 1 1431.8449 P30041 P30041 143 155 PRDX6 Peroxiredoxin-6 yes yes 2;3 4.3199E-06 100.55 By MS/MS By matching By MS/MS By matching By matching 2 1 2 1 1 1.0119 1.0523 9.7341 7 Median 0.94336 0.98287 9.6509 2 0 Median 1.1641 1.0862 NaN 1 0 Median 0.96901 0.99563 9.0724 2 0 Median 1.3844 1.2255 NaN 1 0 Median 0.9759 1.0214 NaN 1 0 Median NaN NaN NaN 0 0 Median 66995000 33640000 33356000 59634000 30284000 29350000 2369100 1050300 1318800 4075200 1936300 2139000 455720 165440 290270 461160 204010 257150 0 0 0 20777 2179 21671 109175;109176;109177;109178;109179;109180;109181 110492;110493;110494;110495 110493 4 LKLSPSPSSR EISAYRKLLEGEEERLKLSPSPSSRVTVSR GEEERLKLSPSPSSRVTVSRASSSRSVRTT R L K S R V 0 1 0 0 0 0 0 0 0 0 2 1 0 0 2 4 0 0 0 0 0 0 10 1 1070.6084 P20700;Q03252 P20700 388 397 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.0017528 81.548 By matching By MS/MS By MS/MS 2 3 3 0.93102 0.88566 24.547 8 Median 0.93102 0.92368 11.011 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66872 0.68845 17.561 3 0 Plateau 1.0871 0.96568 5.167 3 0 Median 17954000 9729100 8224800 1741500 796710 944780 0 0 0 0 0 0 0 0 0 10398000 6208600 4188900 5814900 2723800 3091100 20778 2084;2709 21672 109182;109183;109184;109185;109186;109187;109188;109189 110496;110497;110498;110499;110500 110499 5 LKMEGHEAMER SLDPADERDDVLAKRLKMEGHEAMERLKML LAKRLKMEGHEAMERLKMLALLKRKDLANL R L K E R L 1 1 0 0 0 0 3 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 11 1 1329.6169 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 32 42 GATAD2B Transcriptional repressor p66-beta yes no 3 0.024031 36.982 By MS/MS 1 1.0113 1.0733 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.0733 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4001800 1941700 2060100 0 0 0 0 0 0 4001800 1941700 2060100 0 0 0 0 0 0 0 0 0 20779 311 21673 109190 110501 110501 1 LKMPDMHVNMPK DIDIHGPDAKLKGPKLKMPDMHVNMPKISM GPKLKMPDMHVNMPKISMPEIDLNLKGSKL K L K P K I 0 0 1 1 0 0 0 0 1 0 1 2 3 0 2 0 0 0 0 1 0 0 12 1 1439.7087 Q09666 Q09666 3281 3292 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0015612 42.425 By MS/MS By MS/MS By matching 1 1 1 0.90719 1.0295 14.278 3 Median 0.78287 0.85305 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90719 1.0295 NaN 1 0 Median 1.1112 1.1289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16599000 8501900 8097500 9291800 5204800 4086900 0 0 0 6902000 3116100 3785900 405650 181010 224640 0 0 0 0 0 0 20780 2749 21674 109191;109192;109193 110502;110503;110504 110503 3 LKMPEMNIK DVNIEGPEGKLKGPKLKMPEMNIKAPKISM KLKGPKLKMPEMNIKAPKISMPDFDLHLKG K L K I K A 0 0 1 0 0 0 1 0 0 1 1 2 2 0 1 0 0 0 0 0 0 0 9 1 1102.5879 Q09666 Q09666 2567 2575 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.048361 48.423 By MS/MS By matching By matching 1 1 1 1.1197 1.2196 20.231 3 Median 1.1197 1.2196 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4305 1.6214 NaN 1 0 Median 1.0791 1.0964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27146000 12047000 15099000 13569000 6264100 7304900 0 0 0 12222000 5158300 7063600 1354700 624550 730170 0 0 0 0 0 0 20781 2749 21675 109194;109195;109196 110505 110505 1 LKNDIEEQETLLGTIMPEEESAK ELRNKLQNVNRDIQRLKNDIEEQETLLGTI ETLLGTIMPEEESAKVCLTDVTIMERFQME R L K A K V 1 0 1 1 0 1 6 1 0 2 3 2 1 0 1 1 2 0 0 0 0 0 23 1 2616.284 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 764 786 RAD50 DNA repair protein RAD50 yes no 3 4.9247E-05 35.174 By MS/MS By matching By MS/MS 1 1 1 0.84843 0.9584 10.627 3 Median 0.80575 0.79871 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84843 0.96181 NaN 1 0 Median 1.0267 0.9584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18877000 9610500 9266500 4077800 2139100 1938700 0 0 0 13882000 7047800 6834700 916780 423660 493120 0 0 0 0 0 0 20782 3561 21676 109197;109198;109199 110506;110507;110508;110509 110507 4 LKNITLDDASAPR PKAVAAPRPDRLVNRLKNITLDDASAPRLM NRLKNITLDDASAPRLMVLRQPRGPDNSMG R L K P R L 2 1 1 2 0 0 0 0 0 1 2 1 0 0 1 1 1 0 0 0 0 0 13 1 1412.7623 O75534;E9PLT0 O75534 757 769 CSDE1 Cold shock domain-containing protein E1 yes no 3 0.014914 38.189 By MS/MS 1 1.2848 1.317 NaN 1 Median 1.2848 1.317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3659700 1608300 2051500 3659700 1608300 2051500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20783 1684 21677 109200 110510 110510 1 LKNKHEAMITDLEER TNLTEEEEKSKSLAKLKNKHEAMITDLEER LKNKHEAMITDLEERLRREEKQRQELEKTR K L K E R L 1 1 1 1 0 0 3 0 1 1 2 2 1 0 0 0 1 0 0 0 0 0 15 2 1825.9356 P35579 P35579 1021 1035 MYH9 Myosin-9 yes yes 3;4 5.1126E-10 104.73 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.1736 1.2406 21.316 7 Median 1.0926 1.155 16.076 3 0 Median 1.0132 1.1546 NaN 1 0 Median 1.2534 1.6559 6.1802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2419 1.2741 NaN 1 0 Median 53355000 25390000 27966000 38599000 19100000 19499000 863900 400550 463350 13162000 5562800 7598800 0 0 0 0 0 0 730570 326260 404300 20784 2244 21678;21679 109201;109202;109203;109204;109205;109206;109207 110511;110512;110513;110514;110515;110516;110517;110518;110519 110517 986 9 LKNMALSIAER PVVPQISAPQSNKERLKNMALSIAERYRAQ NKERLKNMALSIAERYRAQGISANKFVDST R L K E R Y 2 1 1 0 0 0 1 0 0 1 2 1 1 0 0 1 0 0 0 0 0 0 11 1 1244.6911 Q8N1F7;H3BVG0;H3BVE2;H3BRD9 Q8N1F7 663 673 NUP93 Nuclear pore complex protein Nup93 yes no 3 0.0016485 47.288 By MS/MS 2 0.90596 1.0286 40.129 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90596 1.0286 40.129 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9406400 5761600 3644800 0 0 0 0 0 0 9406400 5761600 3644800 0 0 0 0 0 0 0 0 0 20785 3356 21680;21681 109208;109209 110520;110521 110520 1714 2 LKNNKEYLEFR RFSGGYPALMDCMNKLKNNKEYLEFRRERS CMNKLKNNKEYLEFRRERSQMLLSRRNQLL K L K F R R 0 1 2 0 0 0 2 0 0 0 2 2 0 1 0 0 0 0 1 0 0 0 11 2 1452.7725 Q9BPW8;C9JDV8;H7C2U6 Q9BPW8 142 152 NIPSNAP1 Protein NipSnap homolog 1 yes no 3 0.063241 29.299 By MS/MS By matching 1 1 0.89759 0.86243 18.709 2 Median 0.70959 0.75556 NaN 1 0 Median 1.1354 0.98441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6738900 3578900 3160000 5335900 2911700 2424200 1403000 667250 735710 0 0 0 0 0 0 0 0 0 0 0 0 20786 3777 21682 109210;109211 110522 110522 0 LKNPNAPMLPPPK PPPSGLPFNAQPRERLKNPNAPMLPPPKNK ERLKNPNAPMLPPPKNKEDFEKTLSQAIVK R L K P K N 1 0 2 0 0 0 0 0 0 0 2 2 1 0 5 0 0 0 0 0 0 0 13 1 1415.7959 O15042;E7ET15;H0Y8D9;E7EW00 O15042 391 403 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 0.066955 12.922 By matching By MS/MS 1 1 0.64099 0.63849 54.624 2 Median NaN NaN NaN 0 0 Median 1.0836 0.93951 NaN 1 0 Median 0.37918 0.43392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3531000 2070100 1461000 0 0 0 717110 257430 459680 2813900 1812600 1001300 0 0 0 0 0 0 0 0 0 20787 1515 21683 109212;109213 110523 110523 1 LKNQIQDQEQLVSK DGKQKLEKKDEEISRLKNQIQDQEQLVSKL RLKNQIQDQEQLVSKLSQVEGEHQLWKEQN R L K S K L 0 0 1 1 0 4 1 0 0 1 2 2 0 0 0 1 0 0 0 1 0 0 14 1 1669.8999 P49454 P49454 2527 2540 CENPF Centromere protein F yes yes 3 0.00052153 47.532 By MS/MS By MS/MS 2 1 1.1062 1.2548 3.2589 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0778 1.2297 2.8511 2 0 Median 1.1579 1.1764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13066000 6029600 7036900 0 0 0 0 0 0 10883000 5060200 5823200 2183000 969340 1213700 0 0 0 0 0 0 20788 2383 21684 109214;109215;109216 110524;110525;110526;110527 110525 4 LKNQVTQLK EILNGKEISAQIRARLKNQVTQLKEQVPGF AQIRARLKNQVTQLKEQVPGFTPRLAILQV R L K L K E 0 0 1 0 0 2 0 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 9 1 1070.6448 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 20 28 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0029585 108.74 By matching By MS/MS By matching 1 3 2 1.157 1.1519 17.08 6 Median 1.1136 1.1797 NaN 1 0 Median 1.3338 1.2402 15.159 3 0 Median 0.90393 0.99012 18.026 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10681000 4776900 5903800 1265300 612480 652780 7307000 3204300 4102700 2108400 960100 1148300 0 0 0 0 0 0 0 0 0 20789 1968 21685 109217;109218;109219;109220;109221;109222 110528;110529 110529 2 LKNQVTQLKEQVPGFTPR EILNGKEISAQIRARLKNQVTQLKEQVPGF QVTQLKEQVPGFTPRLAILQVGNRDDSNLY R L K P R L 0 1 1 0 0 3 1 1 0 0 2 2 0 1 2 0 2 0 0 2 0 0 18 2 2082.1586 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 20 37 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 1.5278E-06 76.713 By MS/MS 1 0.73518 0.83565 NaN 1 Median 0.73518 0.83565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22181000 12756000 9425500 22181000 12756000 9425500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20790 1968 21686 109223 110530;110531 110531 2 LKNTAEQFLSR KKQFFTPKVLQDYRKLKNTAEQFLSRSGYS DYRKLKNTAEQFLSRSGYSEVNLSKLFAGC K L K S R S 1 1 1 0 0 1 1 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 11 1 1305.7041 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1432 1442 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2;3 0.00017618 70.1 By MS/MS 3 1.0293 1.046 3.1477 2 Median 1.0293 1.046 3.1477 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10156000 4786400 5369400 10156000 4786400 5369400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20791 26 21687 109224;109225;109226 110532;110533;110534;110535 110534 4 LKNTLTQTTENLR NLTRENRSLSEEIKRLKNTLTQTTENLRRV KRLKNTLTQTTENLRRVEEDIQQQKATGSE R L K L R R 0 1 2 0 0 1 1 0 0 0 3 1 0 0 0 0 4 0 0 0 0 0 13 1 1530.8366 P15924 P15924 1412 1424 DSP Desmoplakin yes yes 2;3 1.4796E-65 241.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 2 2 4 0.87562 0.95022 26.427 17 Median 0.8559 0.87793 9.3181 4 0 Median 1.3359 1.2556 2.9065 2 0 Median 0.59098 0.70868 19.402 3 2 Median 0.66175 0.62752 32.982 2 0 Median 0.81799 0.93129 9.645 2 0 Median 1.3515 1.1873 10.327 4 0 Median 150180000 77381000 72798000 30420000 16912000 13509000 16468000 8504000 7963500 18826000 10881000 7945100 4315100 2310600 2004500 43277000 23067000 20209000 36873000 15706000 21167000 20792 2021 21688 109227;109228;109229;109230;109231;109232;109233;109234;109235;109236;109237;109238;109239;109240;109241;109242;109243 110536;110537;110538;110539;110540;110541;110542;110543;110544;110545;110546;110547;110548;110549;110550;110551;110552;110553 110553 17 LKNTLTQTTENLRR NLTRENRSLSEEIKRLKNTLTQTTENLRRV RLKNTLTQTTENLRRVEEDIQQQKATGSEV R L K R R V 0 2 2 0 0 1 1 0 0 0 3 1 0 0 0 0 4 0 0 0 0 0 14 2 1686.9377 P15924 P15924 1412 1425 DSP Desmoplakin yes yes 3 0.00033054 52.265 By MS/MS By MS/MS 1 1 1.0542 1.067 64.12 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61782 0.67805 NaN 1 0 Median 1.7987 1.6791 NaN 1 0 Median 7962500 3801300 4161200 0 0 0 0 0 0 0 0 0 0 0 0 4298600 2500900 1797600 3663900 1300400 2363600 20793 2021 21689 109244;109245 110554;110555 110555 2 LKNTSEQDQPMGGWEMIR NVCIEEIDVDGKFIRLKNTSEQDQPMGGWE TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY R L K I R K 0 1 1 1 0 2 2 2 0 1 1 1 2 0 1 1 1 1 0 0 0 0 18 1 2118.9827 P20700 P20700 456 473 LMNB1 Lamin-B1 yes yes 3 3.4074E-14 122.01 By MS/MS By matching By MS/MS By MS/MS 1 1 8 3 0.82187 0.88378 16.658 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83199 0.88378 NaN 1 0 Median 1.1249 0.99574 NaN 1 0 Median 0.76209 0.81417 13.72 8 0 Median 1.2275 1.0684 17.531 3 0 Median 161380000 86427000 74953000 0 0 0 0 0 0 10009000 6134100 3874900 398330 189250 209080 146660000 78170000 68487000 4315900 1933800 2382000 20794 2084 21690;21691;21692 109246;109247;109248;109249;109250;109251;109252;109253;109254;109255;109256;109257;109258 110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567;110568;110569;110570;110571;110572 110559 846;847 17 LKNTSEQDQPMGGWEMIRK NVCIEEIDVDGKFIRLKNTSEQDQPMGGWE SEQDQPMGGWEMIRKIGDTSVSYKYTSRYV R L K R K I 0 1 1 1 0 2 2 2 0 1 1 2 2 0 1 1 1 1 0 0 0 0 19 2 2247.0776 P20700 P20700 456 474 LMNB1 Lamin-B1 yes yes 3 0.0016095 49.708 By MS/MS 1 0.63274 0.74563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63274 0.74563 NaN 1 1 Median NaN NaN NaN 0 0 Median 5551300 3268500 2282800 0 0 0 0 0 0 0 0 0 0 0 0 5551300 3268500 2282800 0 0 0 20795 2084 21693 109259 110573 110573 1 LKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEK KDNGIRPSSLEQMAKLKPAFIKPYGTVTAA LTDGASAMLIMAEEKALAMGYKPKAYLRDF K L K E K A 6 0 1 1 0 0 2 2 0 2 3 3 2 2 2 3 3 0 1 1 0 0 34 2 3571.8306 P55084;F5GZQ3;B5MD38 P55084 292 325 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 4 0.022618 13.343 By MS/MS 1 0.67134 0.78746 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67134 0.78746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3281300 1968300 1313000 0 0 0 0 0 0 3281300 1968300 1313000 0 0 0 0 0 0 0 0 0 20796 2496 21694 109260 110574 110574 1 LKPAHEGLVATVK DLTEAYKTQALGPLKLKPAHEGLVATVKEA LKLKPAHEGLVATVKEAGRSIHEIPREELR K L K V K E 2 0 0 0 0 0 1 1 1 0 2 2 0 0 1 0 1 0 0 2 0 0 13 1 1361.8031 C9J7T7;A0A384DVL6;C9JE98;C9J0Q5;Q9Y618;C9JQE8 C9J7T7 955 967 NCOR2 Nuclear receptor corepressor 2 yes no 3 0.0053724 32.624 By matching By matching By MS/MS By matching 1 1 2 2 0.89208 0.95834 12.931 6 Median 0.73469 0.79236 NaN 1 0 Median 1.1797 1.1566 NaN 1 0 Median 0.86527 0.98775 6.9993 2 0 Median 0.96006 0.93402 6.36 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6576100 3325900 3250100 574460 340810 233650 473430 179130 294290 4380800 2235900 2144900 1147400 570080 577320 0 0 0 0 0 0 20797 409 21695 109261;109262;109263;109264;109265;109266 110575;110576 110576 2 LKPDEGGEVPVLNVSYKPQK NGTGKTTFIRMLAGRLKPDEGGEVPVLNVS GGEVPVLNVSYKPQKISPKSTGSVRQLLHE R L K Q K I 0 0 1 1 0 1 2 2 0 0 2 3 0 0 3 1 0 0 1 3 0 0 20 2 2196.179 P61221;D6R9I9 P61221 396 415 ABCE1 ATP-binding cassette sub-family E member 1 yes no 3;4 1.2067E-05 49.188 By MS/MS By matching 3 1 0.80068 0.92687 19.094 4 Linear 0.80489 0.92969 19.283 3 1 Plateau 0.65299 0.62696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42558000 25544000 17014000 38309000 22970000 15339000 4248700 2574000 1674700 0 0 0 0 0 0 0 0 0 0 0 0 20798 2550 21696 109267;109268;109269;109270 110577;110578;110579 110577 3 LKPEDITQIQPQQLVLR KNKNVTNRSKGTAEKLKPEDITQIQPQQLV PEDITQIQPQQLVLRLRSGEPQTFTLKFKR K L K L R L 0 1 0 1 0 4 1 0 0 2 3 1 0 0 2 0 1 0 0 1 0 0 17 1 2018.1524 P05556;C9JPK5;E7ERX5;Q5T3E6;E9PLR6;E7EUI6;E7EQW5 P05556 106 122 ITGB1 Integrin beta-1;Integrin beta yes no 2;3 1.0883E-14 110.97 By MS/MS By matching By matching 4 3 1 0.83404 0.8164 9.2121 8 Median 0.75182 0.77647 9.7314 4 0 Median 0.87453 0.82114 0.85089 3 0 Median 0.85738 0.97738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40170000 23350000 16820000 32299000 19060000 13239000 6627200 3592500 3034600 1244300 698020 546300 0 0 0 0 0 0 0 0 0 20799 1868 21697 109271;109272;109273;109274;109275;109276;109277;109278 110580;110581;110582;110583;110584;110585;110586 110582 7 LKPEGAPEPEGVAAPPPK APPRAAPREEPLTPRLKPEGAPEPEGVAAP EGAPEPEGVAAPPPKNSFNNPAYYVLEGVP R L K P K N 3 0 0 0 0 0 3 2 0 0 1 2 0 0 6 0 0 0 0 1 0 0 18 1 1782.9516 O15357;A0A0A0MTP6 O15357 961 978 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 3 0.00071469 33.697 By MS/MS 1 0.29821 0.30048 NaN 1 Median 0.29821 0.30048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2697100 1887600 809460 2697100 1887600 809460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20800 1539 21698 109279 110587 110587 1 LKPEGLHQLLAGFEDK LGGLPGPYIKWFLEKLKPEGLHQLLAGFED KPEGLHQLLAGFEDKSAYALCTFALSTGDP K L K D K S 1 0 0 1 0 1 2 2 1 0 4 2 0 1 1 0 0 0 0 0 0 0 16 1 1793.9676 Q9BY32 Q9BY32 95 110 ITPA Inosine triphosphate pyrophosphatase yes yes 3 0.035872 14.922 By MS/MS By MS/MS 1 1 1.1036 1.0652 12.776 2 Median 1.1459 1.1659 NaN 1 0 Median 1.0629 0.97316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8476500 3773900 4702600 6377300 2849400 3527800 2099200 924490 1174800 0 0 0 0 0 0 0 0 0 0 0 0 20801 3884 21699 109280;109281 110588;110589 110589 2 LKPESSQQPGQDALAVK NTEQMREAFATAFSKLKPESSQQPGQDALA PESSQQPGQDALAVKAGHGYDSKKQQELTA K L K V K A 2 0 0 1 0 3 1 1 0 0 2 2 0 0 2 2 0 0 0 1 0 0 17 1 1794.9476 C9JXP4;O96006 C9JXP4 97 113 ZBED1 Zinc finger BED domain-containing protein 1 yes no 3 0.022966 18.234 By MS/MS By matching 1 1 1.0646 1.1136 13.764 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90196 1.0104 NaN 1 0 Median 1.2565 1.2275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9857500 5093300 4764200 0 0 0 0 0 0 7456900 3974700 3482200 2400600 1118600 1282000 0 0 0 0 0 0 20802 727 21700 109282;109283 110590;110591 110590 2 LKPGAPLRPK EHSVMTYLSQFPKAKLKPGAPLRPKLNPKK FPKAKLKPGAPLRPKLNPKKARAYGPGIEP K L K P K L 1 1 0 0 0 0 0 1 0 0 2 2 0 0 3 0 0 0 0 0 0 0 10 2 1075.6866 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 269 278 FLNA Filamin-A no no 2 0.015192 54.611 By matching By MS/MS By matching By matching 1 3 1 1 0.62343 0.68658 21.772 6 Median 0.7325 0.79714 NaN 1 0 Median 0.57702 0.61475 9.2263 3 0 Median NaN NaN NaN 0 0 Median 0.67102 0.71422 NaN 1 0 Median 0.8685 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median 7235900 4369000 2866900 446650 247760 198900 6354200 3911900 2442400 0 0 0 146780 75515 71266 288230 133900 154330 0 0 0 20803 2088;3120 21701 109284;109285;109286;109287;109288;109289 110592 110592 1 LKPGDLVGVNK QTYFLPVIGLVDAEKLKPGDLVGVNKDSYL DAEKLKPGDLVGVNKDSYLILETLPTEYDS K L K N K D 0 0 1 1 0 0 0 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 11 1 1138.671 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PLG2 R4GNH3 129 139 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0090251 56.432 By MS/MS By matching By matching 1 2 1 0.98171 0.92709 12.855 4 Median 0.98526 0.93721 NaN 1 0 Median 1.0843 1.0004 12.302 2 0 Median NaN NaN NaN 0 0 Median 0.83936 0.79724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34336000 17104000 17232000 22721000 11331000 11390000 8681400 4265700 4415700 0 0 0 2933400 1506600 1426800 0 0 0 0 0 0 20804 2050 21702 109290;109291;109292;109293 110593 110593 1 LKPGGVGAPSSSSPSPSPSAR AQEKALKRQLEEEQKLKPGGVGAPSSSSPS GAPSSSSPSPSPSARPGPPPSEEAMDFREE K L K A R P 2 1 0 0 0 0 0 3 0 0 1 1 0 0 5 7 0 0 0 1 0 0 21 1 1921.9858 Q92797 Q92797 1159 1179 SYMPK Symplekin yes yes 3 5.8444E-09 55.763 By MS/MS By MS/MS By MS/MS 1 2 3 0.44944 0.49974 29.816 6 Median NaN NaN NaN 0 0 Median 0.36868 0.3469 NaN 1 0 Median 0.42378 0.49822 24.452 2 0 Median 0.64926 0.62395 29.945 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21557000 14253000 7304200 0 0 0 3766500 2467100 1299400 9544200 7264200 2280000 8246500 4521600 3724800 0 0 0 0 0 0 20805 3558 21703 109294;109295;109296;109297;109298;109299 110594;110595;110596;110597;110598;110599 110598 6 LKPGYLEATVDWFR DPDAANYNDINDVKRLKPGYLEATVDWFRR RLKPGYLEATVDWFRRYKVPDGKPENEFAF R L K F R R 1 1 0 1 0 0 1 1 0 0 2 1 0 1 1 0 1 1 1 1 0 0 14 1 1693.8828 Q15181 Q15181 178 191 PPA1 Inorganic pyrophosphatase yes yes 3 0.071184 11.27 By MS/MS By matching By matching 2 1 1 1.0287 1.0664 13.758 4 Median 1.0458 1.0664 3.8246 2 0 Median 0.87141 0.82793 NaN 1 0 Median 1.0151 1.1159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3672500 1721000 1951500 1779500 866140 913350 259530 107160 152370 1633500 747710 885760 0 0 0 0 0 0 0 0 0 20806 2934 21704 109300;109301;109302;109303 110600 110600 1 LKPKPIDVQVITHHMQR VDARLKLSEELSGGRLKPKPIDVQVITHHM PKPIDVQVITHHMQRYAVWFGGSMLASTPE R L K Q R Y 0 1 0 1 0 2 0 0 2 2 1 2 1 0 2 0 1 0 0 2 0 0 17 2 2039.1462 B4DXW1;P61158 B4DXW1 307 323 ACTR3 Actin-related protein 3 yes no 4;5 2.957E-11 106.6 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 0.98174 1.0718 31.042 7 Median 0.79406 0.8873 17.923 2 0 Median 1.2012 1.4358 NaN 1 0 Median 1.1737 1.3618 53.613 2 1 Median 1.0786 1.1775 13.303 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158420000 71675000 86741000 33103000 16580000 16524000 4786900 2285400 2501500 45759000 18104000 27655000 74767000 34706000 40061000 0 0 0 0 0 0 20807 607 21705 109304;109305;109306;109307;109308;109309;109310 110601;110602;110603;110604;110605;110606;110607;110608 110607 8 LKPLEVELR GVEAKNYEEIAKVEKLKPLEVELRRLEDLS IAKVEKLKPLEVELRRLEDLSESIVNDFAY K L K L R R 0 1 0 0 0 0 2 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 9 1 1095.6652 P49755 P49755 144 152 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 2 0.0067934 81.548 By MS/MS By MS/MS 2 1 1.0158 1.027 4.8328 3 Median 0.99535 1.01 2.3642 2 0 Median 1.2377 1.0925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74468000 37037000 37431000 59507000 30293000 29214000 14961000 6743500 8217600 0 0 0 0 0 0 0 0 0 0 0 0 20808 2396 21706 109311;109312;109313 110609;110610;110611 110609 3 LKPLEVELRR GVEAKNYEEIAKVEKLKPLEVELRRLEDLS AKVEKLKPLEVELRRLEDLSESIVNDFAYM K L K R R L 0 2 0 0 0 0 2 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 10 2 1251.7663 P49755 P49755 144 153 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 3 0.0037173 42.743 By MS/MS By matching 1 1 0.95664 1.0838 30.993 2 Median 0.75067 0.87054 NaN 1 0 Median 1.2191 1.3494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5643500 3014900 2628600 4713800 2546400 2167400 929710 468510 461200 0 0 0 0 0 0 0 0 0 0 0 0 20809 2396 21707 109314;109315 110612;110613 110613 2 LKPLGEAER STSRVTAFLDDLSQKLKPLGEAEREFILNL DDLSQKLKPLGEAEREFILNLKKKECKDRG K L K E R E 1 1 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 1 1011.5713 Q9BYT8;E9PCB6;H0YAK4 Q9BYT8 326 334 NLN Neurolysin, mitochondrial yes no 2 0.069086 44.349 By matching By MS/MS 1 1 1.0825 1.0916 1.3743 2 Median 1.065 1.0811 NaN 1 0 Median 1.1004 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1877300 1018600 858700 394000 214290 179720 1483300 804340 678980 0 0 0 0 0 0 0 0 0 0 0 0 20810 3895 21708 109316;109317 110614 110614 1 LKPLPGETMEK EKDLQEVKAAARDGKLKPLPGETMEKCTQD RDGKLKPLPGETMEKCTQDLGNSTKAVSSA K L K E K C 0 0 0 0 0 0 2 1 0 0 2 2 1 0 2 0 1 0 0 0 0 0 11 1 1241.669 Q9Y490 Q9Y490 1076 1086 TLN1 Talin-1 yes yes 3 0.00042896 59.57 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0236 1.0731 20.014 4 Median 0.8261 0.81311 NaN 1 0 Median 1.0267 0.98078 NaN 1 0 Median 1.0206 1.174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4064 1.2752 NaN 1 0 Median 22617000 11732000 10885000 5170600 2626400 2544200 13869000 7499800 6369300 3037000 1415600 1621400 0 0 0 0 0 0 540740 190200 350550 20811 4441 21709 109318;109319;109320;109321 110615;110616;110617 110617 3 LKPNLGNGADLPNYR DTEEDEEEDEKDKGKLKPNLGNGADLPNYR LKPNLGNGADLPNYRWTQTLSELDLAVPFC K L K Y R W 1 1 3 1 0 0 0 2 0 0 3 1 0 0 2 0 0 0 1 0 0 0 15 1 1640.8635 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 159 173 NUDC Nuclear migration protein nudC yes no 2;3 1.0757E-08 114.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.79213 0.75637 17.459 8 Median 0.82241 0.88149 5.0065 2 0 Median 0.7904 0.74756 0.011596 2 2 Median 0.84763 0.91 29.827 2 0 Median 0.87589 0.76522 NaN 1 0 Median 0.57371 0.62771 NaN 1 0 Median NaN NaN NaN 0 0 Median 152400000 81348000 71050000 94098000 50385000 43713000 35877000 19277000 16600000 18002000 9515100 8486500 2578500 1232800 1345700 1843100 938900 904240 0 0 0 20812 4376 21710 109322;109323;109324;109325;109326;109327;109328;109329 110618;110619;110620;110621;110622;110623;110624;110625;110626;110627;110628 110623 11 LKPPPQASFTSNAFR TSIKVKKTENGDNDRLKPPPQASFTSNAFR LKPPPQASFTSNAFRKLSNSSSSVSPLILS R L K F R K 2 1 1 0 0 1 0 0 0 0 1 1 0 2 3 2 1 0 0 0 0 0 15 1 1659.8733 Q9BVC5 Q9BVC5 126 140 C2orf49 Ashwin yes yes 3 6.3902E-07 93.478 By MS/MS By MS/MS 1 1 0.77422 0.78353 7.1225 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75926 0.82401 NaN 1 0 Median 0.78949 0.74505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12775000 7563600 5210900 0 0 0 0 0 0 10954000 6686300 4268100 1820200 877330 942820 0 0 0 0 0 0 20813 3850 21711 109330;109331 110629;110630;110631 110629 3 LKPPTLIHGQAPSAGLPSQKPK QFPPSQSEERSSGFRLKPPTLIHGQAPSAG HGQAPSAGLPSQKPKEQQRSVLRPAVLQAP R L K P K E 2 0 0 0 0 2 0 2 1 1 3 3 0 0 5 2 1 0 0 0 0 0 22 2 2264.3005 B7Z7F3;Q9H6Z4;K7EN31 B7Z7F3 76 97 RANBP3 Ran-binding protein 3 yes no 4 9.4919E-05 34.615 By MS/MS 1 0.40593 0.41423 NaN 1 Median 0.40593 0.41423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9875800 6481100 3394700 9875800 6481100 3394700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20814 636 21712 109332 110632;110633 110632 2 LKPPVHYNGPSK IKLENRQEARPEPARLKPPVHYNGPSKAGY PARLKPPVHYNGPSKAGYVDFENGQWATDD R L K S K A 0 0 1 0 0 0 0 1 1 0 1 2 0 0 3 1 0 0 1 1 0 0 12 1 1335.7299 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 432 443 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 0.00018728 73.881 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 3 0.65969 0.71817 44.393 10 Median NaN NaN NaN 0 0 Median 0.68808 0.65284 28.146 2 0 Median 0.69865 0.79962 NaN 1 0 Median 0.77616 0.73935 NaN 1 0 Median 0.59827 0.65324 52.651 4 0 Median 0.52316 0.46965 76.475 2 1 Median 22714000 13721000 8992200 0 0 0 1959400 884510 1074900 2341300 1252300 1089100 1258000 694210 563750 13640000 8382100 5258300 3514400 2508300 1006200 20815 2498 21713 109333;109334;109335;109336;109337;109338;109339;109340;109341;109342;109343 110634;110635;110636;110637;110638;110639 110636 6 LKPQYLEELPGQLK RTQLIRLCYSSDHEKLKPQYLEELPGQLKQ KLKPQYLEELPGQLKQFSMFLGKFSWFAGE K L K L K Q 0 0 0 0 0 2 2 1 0 0 4 2 0 0 2 0 0 0 1 0 0 0 14 1 1654.9294 A0A0A0MTN3;P21266 A0A0A0MTN3 127 140 GSTM3 Glutathione S-transferase Mu 3 yes no 2;3 0.023032 54.143 By MS/MS By matching By matching 3 1 1 0.88946 0.85875 9.1265 5 Median 0.84713 0.85875 11.001 3 1 Median 0.88946 0.81373 NaN 1 0 Median 0.89842 0.90618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108410000 56809000 51604000 103090000 53888000 49198000 3121100 1580200 1540900 2206700 1341100 865540 0 0 0 0 0 0 0 0 0 20816 197 21714 109344;109345;109346;109347;109348 110640;110641 110641 2 LKPYFLTDGTGTVTPANASGINDGAAAVVLMK DEFPRHGSNIEAMSKLKPYFLTDGTGTVTP ASGINDGAAAVVLMKKSEADKRGLTPLARI K L K M K K 5 0 2 2 0 0 0 4 0 1 3 2 1 1 2 1 4 0 1 3 0 0 32 1 3191.6537 Q9BWD1 Q9BWD1 234 265 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 3 0.0076279 20.734 By MS/MS By MS/MS By matching 1 1 1 0.86641 0.78613 16.685 3 Median 0.64691 0.60087 NaN 1 0 Median 0.86641 0.78613 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91608 0.81572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14959000 8652000 6307200 13378000 7836600 5541600 1463400 752540 710820 0 0 0 117550 62809 54739 0 0 0 0 0 0 20817 3868 21715 109349;109350;109351 110642;110643 110643 2 LKQDILDEMRK PSANGVQTEGLDYDRLKQDILDEMRKELTK DYDRLKQDILDEMRKELTKLKEELIDAIRQ R L K R K E 0 1 0 2 0 1 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 11 2 1387.7493 A0A0U1RRM6;Q8N8S7 A0A0U1RRM6 769 779 ENAH Protein enabled homolog yes no 3 0.00058167 57.164 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1238 1.2595 16.866 4 Median 1.1449 1.261 NaN 1 0 Median 0.98617 1.0437 NaN 1 0 Median 1.1031 1.258 NaN 1 0 Median 1.4748 1.5764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16143000 7760800 8382100 4946600 2210800 2735800 901840 405770 496070 9093000 4722500 4370500 1201500 421750 779730 0 0 0 0 0 0 20818 313 21716 109352;109353;109354;109355 110644;110645;110646;110647;110648;110649 110644 6 LKQEILEK MIMSNIQRIIQENERLKQEILEKSNRIEEQ IIQENERLKQEILEKSNRIEEQNDKISELI R L K E K S 0 0 0 0 0 1 2 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 8 1 999.59645 Q5T1M5 Q5T1M5 577 584 FKBP15 FK506-binding protein 15 yes yes 2 0.064186 52.786 By MS/MS 1 1.2461 1.1633 NaN 1 Median NaN NaN NaN 0 0 Median 1.2461 1.1633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3010600 1339400 1671200 0 0 0 3010600 1339400 1671200 0 0 0 0 0 0 0 0 0 0 0 0 20819 3079 21717 109356 110650 110650 1 LKQEISLLQAQVSNFQR VQQKRAVKAENHVVKLKQEISLLQAQVSNF QEISLLQAQVSNFQRENEALRCGQGASLTV K L K Q R E 1 1 1 0 0 4 1 0 0 1 3 1 0 1 0 2 0 0 0 1 0 0 17 1 2001.1007 H7C331;Q96C92 H7C331 80 96 SDCCAG3 Serologically defined colon cancer antigen 3 yes no 3 0.00047851 48.907 By MS/MS By matching 2 1 0.57542 0.61698 15.372 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64843 0.69509 19.439 2 1 Median NaN NaN NaN 0 0 Median 0.57542 0.61698 NaN 1 0 Median NaN NaN NaN 0 0 Median 7119400 4172100 2947300 0 0 0 0 0 0 6406200 3723900 2682300 0 0 0 713230 448250 264980 0 0 0 20820 1264 21718 109357;109358;109359 110651;110652 110651 2 LKQEYFVVAATLQDIIR VLYPNDNFFEGKELRLKQEYFVVAATLQDI QEYFVVAATLQDIIRRFKASKFGSTRGAGT R L K I R R 2 1 0 1 0 2 1 0 0 2 2 1 0 1 0 0 1 0 1 2 0 0 17 1 2006.1201 P06737;E9PK47;P11216;P11217 P06737 294 310 PYGL;PYGB;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form no no 2;3 4.8995E-05 53.252 By MS/MS 3 1.269 1.2598 15.071 3 Plateau NaN NaN NaN 0 0 Median 1.269 1.2598 15.071 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12546000 5385500 7160700 0 0 0 12546000 5385500 7160700 0 0 0 0 0 0 0 0 0 0 0 0 20821 1874;1956;1957 21719 109360;109361;109362 110653;110654;110655;110656 110653 4 LKQIEEQTIK EKERIEREKEELMERLKQIEEQTIKAQKEL ELMERLKQIEEQTIKAQKELEEQTRKALEL R L K I K A 0 0 0 0 0 2 2 0 0 2 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1228.7027 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 351 360 RDX Radixin yes no 2;3 0.00033882 85.676 By MS/MS By matching By MS/MS By matching 3 5 3 2 1.0006 1.0925 23.971 13 Median 0.86098 0.92256 13.3 3 0 Plateau 1.3154 1.2362 21.403 5 0 Median 0.982 1.0925 13.554 3 0 Median 1.1639 1.0855 35.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34286000 16915000 17371000 8833200 4798300 4034900 4372400 1818300 2554100 20144000 9848400 10296000 936370 450150 486230 0 0 0 0 0 0 20822 2235 21720 109363;109364;109365;109366;109367;109368;109369;109370;109371;109372;109373;109374;109375 110657;110658;110659;110660;110661;110662;110663 110661 7 LKQIEEQTK EKEKIEREKEELMERLKQIEEQTKKAQQEL EELMERLKQIEEQTKKAQQELEEQTRRALE R L K T K K 0 0 0 0 0 2 2 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 9 1 1115.6186 P26038 P26038 351 359 MSN Moesin yes yes 2 0.012278 70.919 By matching By MS/MS By matching 2 1 1 1.1713 1.1292 11.786 4 Linear 1.1047 1.1074 9.5017 2 0 Median 1.1419 1.0767 NaN 1 0 Median 1.1669 1.3492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2422600 1068500 1354100 670490 313890 356610 808130 390360 417770 943960 364260 579700 0 0 0 0 0 0 0 0 0 20823 2139 21721 109376;109377;109378;109379 110664 110664 1 LKQIGALQ SDLVSLQQSGELLTRLKQIGALQ_______ SGELLTRLKQIGALQ_______________ R L K L Q - 1 0 0 0 0 2 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 1 869.53345 P35754 P35754 99 106 GLRX Glutaredoxin-1 yes yes 2 0.03257 69.383 By MS/MS By MS/MS 1 1 1.173 0.96256 21.434 2 Median NaN NaN NaN 0 0 Median 1.357 1.1201 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0139 0.82719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6637700 2821000 3816700 0 0 0 5700100 2352300 3347800 0 0 0 937580 468700 468880 0 0 0 0 0 0 20824 2250 21722 109380;109381 110665;110666 110665 2 LKQNLEEQLDR ______________________________ ETSKLKQNLEEQLDRLMQQLQDLEECREEL K L K D R L 0 1 1 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1384.731 Q8WZA0 Q8WZA0 12 22 LZIC Protein LZIC yes yes 2;3 0.00094511 96.331 By MS/MS By MS/MS 2 3 1.2627 1.3098 40.894 5 Median 0.94011 0.957 45.425 2 0 Median 1.395 1.3098 38.593 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18310000 8353300 9957200 12604000 5922400 6681800 5706300 2430900 3275300 0 0 0 0 0 0 0 0 0 0 0 0 20825 3525 21723 109382;109383;109384;109385;109386 110667;110668;110669;110670 110667 4 LKQQSELQSQVR KQSFTMVADTPENLRLKQQSELQSQVRYKE NLRLKQQSELQSQVRYKEEFEKNKGKGFSV R L K V R Y 0 1 0 0 0 4 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 12 1 1442.7841 Q14847;C9J9W2 Q14847 74 85 LASP1 LIM and SH3 domain protein 1 yes no 2;3 1.4105E-06 110.14 By MS/MS By MS/MS By MS/MS By MS/MS 8 9 2 4 1.1385 1.0735 13.121 23 Median 1.0619 1.0871 15.124 8 0 Median 1.1663 1.0735 9.4585 9 2 Median 1.1774 1.291 5.2766 2 1 Median 1.0802 0.95178 7.3514 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51114000 23005000 28108000 21523000 9904000 11619000 18725000 8048400 10676000 6478400 2881900 3596500 4387300 2171200 2216100 0 0 0 0 0 0 20826 2901 21724 109387;109388;109389;109390;109391;109392;109393;109394;109395;109396;109397;109398;109399;109400;109401;109402;109403;109404;109405;109406;109407;109408;109409 110671;110672;110673;110674;110675;110676;110677;110678;110679;110680;110681;110682;110683;110684;110685;110686;110687;110688;110689;110690;110691;110692;110693 110674 23 LKQSAEEQAQAR REAAQSRRQVEEAERLKQSAEEQAQARAQA AERLKQSAEEQAQARAQAQAAAEKLRKEAE R L K A R A 3 1 0 0 0 3 2 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1357.695 Q15149 Q15149 2254 2265 PLEC Plectin yes yes 3 0.033679 21.23 By matching By matching By matching By MS/MS 1 2 1 1 1.0895 1.0974 15.331 5 Median 1.0895 1.099 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85289 0.96734 5.2394 2 0 Median 1.3756 1.4004 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2354 1.0974 NaN 1 0 Median 1090200 498490 591750 87548 37161 50387 0 0 0 514840 267830 247010 114070 40614 73454 0 0 0 373780 152880 220900 20827 2933 21725 109410;109411;109412;109413;109414 110694 110694 1 LKQSLPPGLAVK YLYTLVITDKEKAEKLKQSLPPGLAVKELK AEKLKQSLPPGLAVKELK____________ K L K V K E 1 0 0 0 0 1 0 1 0 0 3 2 0 0 2 1 0 0 0 1 0 0 12 1 1249.7758 P63173 P63173 56 67 RPL38 60S ribosomal protein L38 yes yes 2;3 2.1751E-05 149.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 6 3 4 1 0.83533 0.73698 24.089 24 Median 0.80989 0.75844 2.0835 4 0 Median 0.88093 0.74737 21.442 6 0 Median 0.80553 0.60537 31.405 6 0 Median 0.83753 0.70248 15.69 3 0 Median 0.8808 0.63024 26.772 4 0 Median 0.90019 0.90146 NaN 1 0 Median 519910000 275600000 244310000 167620000 89366000 78250000 230400000 120770000 109630000 95406000 51298000 44108000 9610900 5050800 4560000 15436000 8354900 7081400 1436300 756070 680280 20828 2622 21726 109415;109416;109417;109418;109419;109420;109421;109422;109423;109424;109425;109426;109427;109428;109429;109430;109431;109432;109433;109434;109435;109436;109437;109438 110695;110696;110697;110698;110699;110700;110701;110702;110703;110704;110705;110706;110707;110708;110709;110710;110711;110712;110713;110714;110715;110716;110717;110718;110719;110720;110721;110722;110723;110724;110725;110726;110727;110728;110729 110712 35 LKQVEDEKNSFR LLQEENRQKLSLSTKLKQVEDEKNSFREQL STKLKQVEDEKNSFREQLEEEEEAKHNLEK K L K F R E 0 1 1 1 0 1 2 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 12 2 1491.7682 P35579 P35579 1331 1342 MYH9 Myosin-9 yes yes 3 0.00010228 82.362 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1699 1.2692 23.388 4 Median 1.2712 1.3437 NaN 1 0 Median 1.052 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5274 1.7956 NaN 1 0 Median 1.0767 1.0335 NaN 1 0 Median 12079000 5076000 7002900 7690300 3173600 4516700 2091500 941070 1150500 0 0 0 0 0 0 1465800 552480 913300 831260 408850 422410 20829 2244 21727 109439;109440;109441;109442 110730;110731;110732;110733;110734;110735 110731 6 LKSDTAAAAVR NLNRQFLFRPWDVTKLKSDTAAAAVRQMNP DVTKLKSDTAAAAVRQMNPHIRVTSHQNRV K L K V R Q 4 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 11 1 1101.6142 P22314 P22314 527 537 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.0034337 63.816 By matching By MS/MS By matching By matching 3 4 2 1 1.0347 1.1124 13.366 10 Median 1.0201 1.0576 10.981 3 0 Plateau 1.2868 1.2086 13.788 4 0 Median 0.9382 1.0762 9.7702 2 0 Median 1.1991 1.1523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29592000 12828000 16764000 5522600 2786600 2736000 23228000 9621800 13606000 700710 353400 347310 141280 66565 74719 0 0 0 0 0 0 20830 2100 21728 109443;109444;109445;109446;109447;109448;109449;109450;109451;109452 110736;110737;110738;110739;110740 110736 5 LKSEDGVEGDLGETQSR DEEYQRIYTTKIKPRLKSEDGVEGDLGETQ SEDGVEGDLGETQSRTITVTRRVTAYTVDV R L K S R T 0 1 0 2 0 1 3 3 0 0 2 1 0 0 0 2 1 0 0 1 0 0 17 1 1818.8595 Q09666 Q09666 133 149 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 6.4817E-06 76.378 By MS/MS By matching By MS/MS By MS/MS 3 1 2 3 1.1366 1.1866 13.062 9 Median 1.236 1.2637 4.8579 3 1 Median 1.5888 1.4773 NaN 1 0 Median 1.046 1.2293 4.9949 2 0 Median 1.2087 1.1259 9.9752 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42122000 18372000 23750000 10730000 5045700 5684400 6755700 2326300 4429400 11922000 5535100 6386500 12715000 5465200 7249700 0 0 0 0 0 0 20831 2749 21729 109453;109454;109455;109456;109457;109458;109459;109460;109461 110741;110742;110743;110744;110745;110746;110747;110748;110749;110750;110751 110748 11 LKSELVANNVTLPAGEQR MPEFLEDPSVLTKDKLKSELVANNVTLPAG ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K L K Q R K 2 1 2 0 0 1 2 1 0 0 3 1 0 0 1 1 1 0 0 2 0 0 18 1 1938.0534 P42166;P42167;G5E972 P42166 16 33 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 8.6918E-15 110.29 By MS/MS By MS/MS By MS/MS By matching 7 7 3 2 0.83364 0.86997 22.565 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78389 0.86394 9.8904 7 0 Median 1.0747 1.0315 20.785 7 2 Median 0.61519 0.69874 17.683 3 0 Median 0.96532 0.86308 37.99 2 0 Median 272330000 150180000 122160000 0 0 0 0 0 0 209760000 114930000 94829000 25433000 11012000 14421000 35529000 23495000 12035000 1608800 738630 870180 20832 2306;2307 21730 109462;109463;109464;109465;109466;109467;109468;109469;109470;109471;109472;109473;109474;109475;109476;109477;109478;109479;109480 110752;110753;110754;110755;110756;110757;110758;110759;110760;110761;110762;110763;110764;110765;110766;110767;110768 110758 17 LKSELVANNVTLPAGEQRK MPEFLEDPSVLTKDKLKSELVANNVTLPAG LVANNVTLPAGEQRKDVYVQLYLQHLTARN K L K R K D 2 1 2 0 0 1 2 1 0 0 3 2 0 0 1 1 1 0 0 2 0 0 19 2 2066.1484 P42166;P42167;G5E972 P42166 16 34 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3;4 1.9868E-05 46.953 By matching By MS/MS By matching 4 2 2 0.97674 0.98635 24.006 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99784 1.0287 28.979 4 0 Median 0.74589 0.85324 7.1058 2 0 Median 1.2919 1.2034 14.738 2 0 Median 67913000 36447000 31466000 0 0 0 0 0 0 0 0 0 6766600 3339400 3427100 55486000 30669000 24816000 5660300 2437800 3222500 20833 2306;2307 21731 109481;109482;109483;109484;109485;109486;109487;109488 110769;110770;110771 110771 3 LKSSELQAIK FARSTAVTTSSAKIKLKSSELQAIKTELTQ SAKIKLKSSELQAIKTELTQIKSNIDALLS K L K I K T 1 0 0 0 0 1 1 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 10 1 1115.655 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 182 191 RALY RNA-binding protein Raly yes no 2 0.01628 56.729 By MS/MS By matching 2 1 0.90251 0.95287 29.121 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7967 0.84038 17.766 2 0 Median 1.5525 1.3246 NaN 1 0 Median 9921900 4923100 4998800 0 0 0 0 0 0 0 0 0 0 0 0 8915600 4580600 4335000 1006300 342550 663730 20834 4313 21732 109489;109490;109491 110772 110772 1 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK RYYGGGSEGGRAPKRLKTDNAGDQHGGGGG AGGGGGGENYDDPHKTPASPVVHIRGLIDG R L K H K T 4 0 2 4 0 1 1 17 2 0 1 2 0 0 1 0 1 0 1 0 0 0 37 1 3221.3743 P14866 P14866 61 97 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 4;5 0.058805 7.8688 By matching By MS/MS 1 2 0.9419 0.8697 10.959 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66196 0.75622 NaN 1 0 Median 0.97851 0.9035 5.392 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307800 1846100 1461600 0 0 0 0 0 0 1826200 1123400 702780 1481600 722720 758860 0 0 0 0 0 0 20835 2011 21733 109492;109493;109494 110773;110774;110775 110774 3 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR RYYGGGSEGGRAPKRLKTDNAGDQHGGGGG DDPHKTPASPVVHIRGLIDGVVEADLVEAL R L K I R G 5 1 2 4 0 1 1 17 3 1 1 2 0 0 3 1 2 0 1 2 0 0 47 2 4278.9775 P14866 P14866 61 107 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 4;5;6 3.0439E-06 27.17 By MS/MS By MS/MS By MS/MS By matching 5 2 3 1 0.56756 0.65681 18.833 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55059 0.65202 9.7207 4 1 Median 0.8145 0.83629 4.5547 2 0 Median 0.50577 0.57857 20.323 3 0 Median NaN NaN NaN 0 0 Median 120140000 74613000 45525000 0 0 0 0 0 0 48916000 34250000 14666000 8473600 4344200 4129300 61042000 34964000 26077000 1706200 1054100 652140 20836 2011 21734 109495;109496;109497;109498;109499;109500;109501;109502;109503;109504;109505 110776;110777;110778;110779;110780;110781;110782;110783;110784 110782 9 LKTDVDVSLPK KISMPDVGLNLKAPKLKTDVDVSLPKVEGD KAPKLKTDVDVSLPKVEGDLKGPEIDVKAP K L K P K V 0 0 0 2 0 0 0 0 0 0 2 2 0 0 1 1 1 0 0 2 0 0 11 1 1213.6918 Q09666 Q09666 1593 1603 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00063363 106.16 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 4 1.0522 1.0405 20.017 15 Median 0.92289 1.005 27.048 4 0 Median 1.2273 1.1853 10.922 4 0 Median 0.91509 1.035 30.197 3 0 Median 1.0538 1.0276 6.3246 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150740000 69955000 80790000 45974000 19330000 26644000 25804000 11253000 14551000 64846000 32446000 32400000 14120000 6925700 7194400 0 0 0 0 0 0 20837 2749 21735 109506;109507;109508;109509;109510;109511;109512;109513;109514;109515;109516;109517;109518;109519;109520;109521 110785;110786;110787;110788;110789;110790;110791;110792;110793;110794;110795;110796;110797;110798;110799;110800;110801;110802;110803;110804;110805 110796 21 LKTEAEIALK RVLAEKLAAIGEATRLKTEAEIALKEKEAE GEATRLKTEAEIALKEKEAENERLRRLAED R L K L K E 2 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1114.6598 Q15149 Q15149 1985 1994 PLEC Plectin yes yes 2 0.0016489 106.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.2046 1.2969 13.815 7 Median 1.0818 1.1436 20.537 2 0 Median 1.2379 1.1958 11.48 2 0 Median 1.196 1.359 NaN 1 0 Median 1.3953 1.4176 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2046 1.0749 NaN 1 0 Median 113320000 47307000 66017000 21980000 9670600 12310000 72813000 30035000 42778000 3496300 1490500 2005800 2555700 1140800 1414900 0 0 0 12478000 4969900 7508200 20838 2933 21736 109522;109523;109524;109525;109526;109527;109528 110806;110807;110808;110809;110810;110811;110812;110813;110814;110815;110816 110807 11 LKTEAEIALKEK RVLAEKLAAIGEATRLKTEAEIALKEKEAE ATRLKTEAEIALKEKEAENERLRRLAEDEA R L K E K E 2 0 0 0 0 0 3 0 0 1 2 3 0 0 0 0 1 0 0 0 0 0 12 2 1371.7973 Q15149 Q15149 1985 1996 PLEC Plectin yes yes 2;3 0.024531 57.106 By MS/MS 3 1.1277 1.332 4.5285 3 Plateau 1.1277 1.332 4.5285 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46611000 22533000 24078000 46611000 22533000 24078000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20839 2933 21737 109529;109530;109531 110817;110818;110819 110819 3 LKTEDSLMPEEEFLR VHPPPPMEDEPTSKKLKTEDSLMPEEEFLR LKTEDSLMPEEEFLRRNKGPVSIKVQVPNM K L K L R R 0 1 0 1 0 0 4 0 0 0 3 1 1 1 1 1 1 0 0 0 0 0 15 1 1835.8975 Q15459 Q15459 685 699 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.0032172 30.543 By MS/MS By matching 1 1 0.80395 0.89803 4.5702 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76627 0.86947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84348 0.92752 NaN 1 0 Median NaN NaN NaN 0 0 Median 11782000 5972400 5809100 0 0 0 0 0 0 6476500 3176700 3299800 0 0 0 5305000 2795700 2509300 0 0 0 20840 2954 21738 109532;109533 110820;110821 110821 2 LKTEDSLMPEEEFLRR VHPPPPMEDEPTSKKLKTEDSLMPEEEFLR KTEDSLMPEEEFLRRNKGPVSIKVQVPNMQ K L K R R N 0 2 0 1 0 0 4 0 0 0 3 1 1 1 1 1 1 0 0 0 0 0 16 2 1991.9986 Q15459 Q15459 685 700 SF3A1 Splicing factor 3A subunit 1 yes yes 3;4 3.8902E-05 67.358 By MS/MS By MS/MS By matching 2 1 1 0.94713 1.1112 34.341 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0314 1.2135 7.5438 2 0 Median NaN NaN NaN 0 0 Median 0.91745 1.0733 NaN 1 0 Median 0.6867 0.59525 NaN 1 0 Median 15879000 7686400 8192600 0 0 0 0 0 0 10108000 4731900 5376500 0 0 0 5619300 2892800 2726400 151270 61626 89642 20841 2954 21739 109534;109535;109536;109537 110822;110823 110822 2 LKTEEGEIDYSAEEGENRR ETYEEDREYESQAKRLKTEEGEIDYSAEEG EGEIDYSAEEGENRREATPRGGGDGGGGGR R L K R R E 1 2 1 1 0 0 6 2 0 1 1 1 0 0 0 1 1 0 1 0 0 0 19 2 2224.0244 B7WPG3;C9IYN3;D6W592;Q8WVV9 B7WPG3 25 43 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 4 0.024284 15.09 By MS/MS 1 0.6361 0.67625 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6361 0.67625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4275300 2655400 1619900 0 0 0 0 0 0 4275300 2655400 1619900 0 0 0 0 0 0 0 0 0 20842 629 21740 109538 110824 110824 1 LKTEGSDLCDR EHKALTSEIALLQSRLKTEGSDLCDRVSEM LQSRLKTEGSDLCDRVSEMQKLDAQVKELV R L K D R V 0 1 0 2 1 0 1 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 1 1292.6031 P04843;B7Z4L4 P04843 537 547 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 0.012541 46.158 By MS/MS 2 1.2091 1.1129 1.5521 2 Median NaN NaN NaN 0 0 Median 1.2091 1.1129 1.5521 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3306600 1339700 1966900 0 0 0 3306600 1339700 1966900 0 0 0 0 0 0 0 0 0 0 0 0 20843 1853 21741 109539;109540 110825;110826;110827 110825 3 LKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFR EIFQDNHEDGPTAKKLKTEQGGAHFSVSSL SVTSVGSVNPAENFRVLVKQKKASFEEASN K L K F R V 3 1 2 0 0 1 3 4 1 0 2 1 0 2 1 6 2 0 0 4 0 0 33 1 3361.6539 P13010 P13010 567 599 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3;4 2.7871E-05 27.547 By MS/MS By MS/MS 2 1 0.85526 0.90752 7.3088 3 Median 0.83763 0.8593 9.3257 2 0 Median NaN NaN NaN 0 0 Median 0.85526 0.90752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16633000 9482000 7151100 11482000 6748700 4733300 0 0 0 5151100 2733300 2417800 0 0 0 0 0 0 0 0 0 20844 1986 21742 109541;109542;109543 110828;110829;110830 110828 3 LKTETDKENAEVK KPDQVEGIQKSGTKKLKTETDKENAEVKFK KKLKTETDKENAEVKFKDFLLSLKTMMFSE K L K V K F 1 0 1 1 0 0 3 0 0 0 1 3 0 0 0 0 2 0 0 1 0 0 13 2 1503.7781 Q86UP2 Q86UP2 271 283 KTN1 Kinectin yes yes 3 0.00052284 51.211 By MS/MS By matching 1 1 0.96253 1.0283 6.4313 2 Median NaN NaN NaN 0 0 Median 1.1331 1.0761 NaN 1 0 Median 0.81767 0.98255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2674900 1137700 1537300 0 0 0 2536900 1072400 1464500 138000 65239 72765 0 0 0 0 0 0 0 0 0 20845 3280 21743 109544;109545 110831;110832 110832 2 LKTLLVNNNR DNEIRKLDGFPLLRRLKTLLVNNNRICRIG PLLRRLKTLLVNNNRICRIGEGLDQALPCL R L K N R I 0 1 3 0 0 0 0 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 10 1 1183.7037 P09661;H0YKK0 P09661 66 75 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 3 0.001106 67.704 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5963200 0 5963200 0 0 0 0 0 0 978330 0 978330 1054700 0 1054700 3930300 0 3930300 0 0 0 20846 1920 21744 109546;109547;109548 110833;110834;110835 110834 3 LKTQMLDQEELLASTR DKDEEINQQSQLVEKLKTQMLDQEELLAST KTQMLDQEELLASTRRDQDNMQAELNRLQA K L K T R R 1 1 0 1 0 2 2 0 0 0 4 1 1 0 0 1 2 0 0 0 0 0 16 1 1874.9772 P33176 P33176 449 464 KIF5B Kinesin-1 heavy chain yes yes 3 3.8978E-05 66.673 By MS/MS 1 1.0355 1.079 NaN 1 Median 1.0355 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11875000 6234300 5641000 11875000 6234300 5641000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20847 2221 21745 109549 110836;110837 110836 2 LKTQMLDQEELLASTRR DKDEEINQQSQLVEKLKTQMLDQEELLAST TQMLDQEELLASTRRDQDNMQAELNRLQAE K L K R R D 1 2 0 1 0 2 2 0 0 0 4 1 1 0 0 1 2 0 0 0 0 0 17 2 2031.0783 P33176 P33176 449 465 KIF5B Kinesin-1 heavy chain yes yes 3;4 0.053562 11.115 By MS/MS 2 1.205 1.2978 37.246 2 Median 1.205 1.2978 37.246 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9013700 4284100 4729600 9013700 4284100 4729600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20848 2221 21746 109550;109551 110838;110839 110838 2 LKVDSFR ______________________________ LKVDQEVKLKVDSFRERITSEAEDLVANFF K L K F R E 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 7 1 863.4865 K9J957;P61289;K7ESG5;A0A087WTV2;K7ENH2;B7Z8D3 K9J957 13 19 PSME3 Proteasome activator complex subunit 3 yes no 2 0.050205 81.784 By MS/MS By matching By matching By matching 1 1 1 2 1.2607 1.1717 15.761 5 Median 1.1679 1.1717 NaN 1 0 Median 1.2607 1.1325 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2682 1.1968 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0424 1.0099 26.983 2 0 Median 20191000 8668700 11522000 10210000 4190600 6019700 4853800 2044100 2809700 0 0 0 3517700 1631700 1886000 0 0 0 1609200 802330 806850 20849 1403 21747 109552;109553;109554;109555;109556 110840 110840 1 LKVEDALSYLDQVK APPVAPVQGQQQFQRLKVEDALSYLDQVKL RLKVEDALSYLDQVKLQFGSQPQVYNDFLD R L K V K L 1 0 0 2 0 1 1 0 0 0 3 2 0 0 0 1 0 0 1 2 0 0 14 1 1619.877 Q96ST3;H3BP90;H3BNZ3 Q96ST3 121 134 SIN3A Paired amphipathic helix protein Sin3a yes no 3 0.03747 18.015 By matching By MS/MS By matching 1 1 1 1.3983 1.2984 16.655 3 Median NaN NaN NaN 0 0 Median 1.3983 1.3526 NaN 1 0 Median 0.86975 0.99533 NaN 1 0 Median 1.3993 1.2984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5480500 2776800 2703700 0 0 0 2504500 1096100 1408400 2847400 1626200 1221200 128650 54508 74138 0 0 0 0 0 0 20850 3737 21748 109557;109558;109559 110841 110841 1 LKVEELEGER EQSFLFSREEADTLRLKVEELEGERSRLEE ADTLRLKVEELEGERSRLEEEKRMLEAQLE R L K E R S 0 1 0 0 0 0 4 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 1 1200.635 Q9Y6D9 Q9Y6D9 503 512 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes yes 3 0.049342 18.745 By matching By matching By MS/MS 2 1 1 1.3131 1.3324 35.345 4 Median 1.2651 1.4359 58.121 2 0 Median NaN NaN NaN 0 0 Median 1.0884 1.1756 NaN 1 0 Median 1.5841 1.5102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9777700 4621200 5156600 6320000 3148300 3171800 0 0 0 2253300 1212200 1041100 1204400 260700 943690 0 0 0 0 0 0 20851 4490 21749 109560;109561;109562;109563 110842 110842 1 LKVGLQVVAVK EDVDGEALSTLVLNRLKVGLQVVAVKAPGF VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM R L K V K A 1 0 0 0 0 1 0 1 0 0 2 2 0 0 0 0 0 0 0 4 0 0 11 1 1152.7594 P10809 P10809 291 301 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.00079402 80.219 By MS/MS By matching By matching 1 2 1 1.2866 1.1968 23.362 4 Median 1.2082 1.1184 NaN 1 0 Median 1.628 1.5294 25.086 2 0 Median 1.0572 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84241000 36688000 47553000 73560000 32371000 41189000 7246700 2824200 4422500 3434200 1493100 1941100 0 0 0 0 0 0 0 0 0 20852 1947 21750 109564;109565;109566;109567 110843;110844 110843 2 LKVIGQDSSEIHFK STEDLGDKKEGEYIKLKVIGQDSSEIHFKV KLKVIGQDSSEIHFKVKMTTHLKKLKESYC K L K F K V 0 0 0 1 0 1 1 1 1 2 1 2 0 1 0 2 0 0 0 1 0 0 14 1 1599.8621 B8ZZN6;P63165;B8ZZJ0;B9A032 B8ZZN6 24 37 SUMO1 Small ubiquitin-related modifier 1 yes no 3 0.0024209 35.891 By matching By MS/MS 1 1 0.87331 0.82121 19.249 2 Median NaN NaN NaN 0 0 Median 0.82675 0.71671 NaN 1 0 Median 0.92249 0.94095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5242100 2524100 2717900 0 0 0 1660200 656670 1003500 3581900 1867500 1714400 0 0 0 0 0 0 0 0 0 20853 649 21751 109568;109569 110845;110846 110846 2 LKVNELREELQR ______________________________ VRRLKVNELREELQRRGLDTRGLKAELAER R L K Q R R 0 2 1 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 12 2 1525.8576 Q9BUJ2;M0R247;A0A087X1I2 Q9BUJ2 6 17 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 1.687E-05 95.018 By matching By MS/MS 1 1 0.75599 0.88694 9.8904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8084 0.95119 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70697 0.82703 NaN 1 0 Median NaN NaN NaN 0 0 Median 11233000 6741700 4491700 0 0 0 0 0 0 3136000 1686400 1449600 0 0 0 8097300 5055200 3042100 0 0 0 20854 3840 21752 109570;109571 110847 110847 1 LKVNFLPEIITLSK IESTRVRGRTGNVLKLKVNFLPEIITLSKE KLKVNFLPEIITLSKEVRNLKWLGFRVPLA K L K S K E 0 0 1 0 0 0 1 0 0 2 3 2 0 1 1 1 1 0 0 1 0 0 14 1 1613.9756 Q14204 Q14204 735 748 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 2.5337E-07 103.44 By MS/MS By matching By matching 3 2 3 0.88974 1.1639 12.743 8 Linear 0.96305 1.0506 9.9384 3 0 Plateau 1.0676 1.0143 0.20322 2 0 Median 0.83412 0.94782 16.373 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21369000 10810000 10560000 17404000 8816000 8588000 2781600 1354600 1427000 1183700 639250 544470 0 0 0 0 0 0 0 0 0 20855 2865 21753 109572;109573;109574;109575;109576;109577;109578;109579 110848;110849 110849 2 LKVPEWVDTVK EFVRALAAFLKKSGKLKVPEWVDTVKLAKH KSGKLKVPEWVDTVKLAKHKELAPYDENWF K L K V K L 0 0 0 1 0 0 1 0 0 0 1 2 0 0 1 0 1 1 0 3 0 0 11 1 1312.7391 P39019;M0R2L9;M0QYF7;M0R140 P39019 28 38 RPS19 40S ribosomal protein S19 yes no 2;3 6.3257E-05 77.662 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 2 2 1 0.99955 0.97896 9.9026 12 Median 0.96603 0.95557 1.5624 2 0 Median 1.0499 0.92836 4.0011 2 0 Median 0.99837 1.0039 3.018 3 0 Median 1.1359 1.0213 2.8462 2 0 Median 0.77356 0.88936 26.959 2 0 Median 1.1143 0.95595 NaN 1 0 Median 351910000 174340000 177570000 261130000 130020000 131110000 8654300 4122400 4531900 73703000 35944000 37758000 1847200 783890 1063300 4547800 2597700 1950100 2026100 872870 1153200 20856 2280 21754 109580;109581;109582;109583;109584;109585;109586;109587;109588;109589;109590;109591 110850;110851;110852;110853;110854;110855;110856;110857;110858;110859;110860;110861;110862;110863;110864;110865;110866;110867;110868;110869;110870 110863 21 LKVPPAINQFTQALDR RYIRLQRQRAILYKRLKVPPAINQFTQALD KVPPAINQFTQALDRQTATQLLKLAHKYRP R L K D R Q 2 1 1 1 0 2 0 0 0 1 2 1 0 1 2 0 1 0 0 1 0 0 16 1 1810.0101 P62424;Q5T8U3 P62424 74 89 RPL7A 60S ribosomal protein L7a yes no 2;3 8.2191E-11 134.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 2 2 2 5 4 0.82631 0.83352 20.537 20 Median 0.81958 0.83512 16.714 5 0 Median 0.80205 0.70023 7.6341 2 0 Median 0.71424 0.77955 24.612 2 0 Median 1.0165 0.95931 1.3265 2 0 Median 0.79252 0.85809 22.166 5 0 Median 0.92351 0.81377 24.923 4 0 Median 459220000 239640000 219580000 128650000 70170000 58482000 178110000 90206000 87905000 16985000 9127500 7857400 2263400 1092300 1171100 44093000 23376000 20718000 89114000 45665000 43449000 20857 2589 21755 109592;109593;109594;109595;109596;109597;109598;109599;109600;109601;109602;109603;109604;109605;109606;109607;109608;109609;109610;109611 110871;110872;110873;110874;110875;110876;110877;110878;110879;110880;110881;110882;110883;110884;110885;110886;110887;110888;110889;110890;110891 110876 21 LKVQEQELTR DLQKANSSATETINKLKVQEQELTRLRIDY ETINKLKVQEQELTRLRIDYERVSQERTVK K L K T R L 0 1 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1242.6932 P15924 P15924 1528 1537 DSP Desmoplakin yes yes 2;3 0.0069195 81.338 By MS/MS 2 0.49323 0.43814 40.8 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49323 0.43814 40.8 2 2 Median 7247800 4787200 2460600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7247800 4787200 2460600 20858 2021 21756 109612;109613 110892;110893 110893 2 LKVSELKEELK ______________________________ NVKKLKVSELKEELKKRRLSDKGLKAELME K L K L K K 0 0 0 0 0 0 3 0 0 0 3 3 0 0 0 1 0 0 0 1 0 0 11 2 1314.7759 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 11 21 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 4.3585E-05 101.38 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 2 1.069 1.1556 19.494 12 Median 1.003 1.0514 8.7784 2 0 Median NaN NaN NaN 0 0 Median 0.92947 1.1253 12.864 2 0 Median NaN NaN NaN 0 0 Median 1.078 1.2248 27.462 6 0 Median 1.0933 1.1279 8.2956 2 0 Median 118510000 55538000 62972000 16653000 7958500 8694400 0 0 0 11379000 5390100 5989400 0 0 0 81984000 38179000 43804000 8493500 4009900 4483600 20859 2680 21757 109614;109615;109616;109617;109618;109619;109620;109621;109622;109623;109624;109625 110894;110895;110896;110897;110898;110899;110900;110901;110902;110903;110904;110905;110906 110899 11 LKVTEGGEPYR MEHVYGIPEHADNLRLKVTEGGEPYRLYNL DNLRLKVTEGGEPYRLYNLDVFQYELYNPM R L K Y R L 0 1 0 0 0 0 2 2 0 0 1 1 0 0 1 0 1 0 1 1 0 0 11 1 1247.651 E9PKU7;Q14697;F5H6X6 Q14697 268 278 GANAB Neutral alpha-glucosidase AB no no 2;3 0.00078134 103.7 By MS/MS By MS/MS By matching 4 4 1 0.96341 0.97412 33.95 9 Median 0.94114 0.98207 35.144 4 0 Linear 1.2062 1.1598 17.414 4 0 Median 0.84061 0.95982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74721000 40112000 34609000 40850000 22387000 18463000 33004000 17306000 15697000 867570 418540 449030 0 0 0 0 0 0 0 0 0 20860 2896;951 21758 109626;109627;109628;109629;109630;109631;109632;109633;109634 110907;110908;110909;110910;110911;110912;110913;110914;110915;110916;110917 110912 11 LKVTELR ______________________________ ______________________________ R L K L R S 0 1 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 1 857.53345 Q1KMD3;H3BQZ7 Q1KMD3 6 12 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.031987 91.9 By matching By MS/MS By matching 1 4 2 0.87557 0.89724 16.881 7 Median NaN NaN NaN 0 0 Median 0.65798 0.62921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86354 0.92971 9.7435 4 0 Median 1.0365 0.918 3.2666 2 0 Median 41100000 21309000 19791000 0 0 0 945220 495560 449660 0 0 0 0 0 0 33458000 17467000 15991000 6696700 3346600 3350200 20861 3002 21759 109635;109636;109637;109638;109639;109640;109641 110918;110919 110918 2 LKYALTGDEVK KLRECLPLIIFLRNRLKYALTGDEVKKICM LRNRLKYALTGDEVKKICMQRFIKIDGKVR R L K V K K 1 0 0 1 0 0 1 1 0 0 2 2 0 0 0 0 1 0 1 1 0 0 11 1 1235.6762 P62701;Q8TD47 P62701 52 62 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 3 0.059842 25.701 By MS/MS 1 0.21325 0.19471 NaN 1 Median NaN NaN NaN 0 0 Median 0.21325 0.19471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8331300 6966300 1365000 0 0 0 8331300 6966300 1365000 0 0 0 0 0 0 0 0 0 0 0 0 20862 2593 21760 109642 110920 110920 1 LKYALTGDEVKK KLRECLPLIIFLRNRLKYALTGDEVKKICM RNRLKYALTGDEVKKICMQRFIKIDGKVRT R L K K K I 1 0 0 1 0 0 1 1 0 0 2 3 0 0 0 0 1 0 1 1 0 0 12 2 1363.7711 P62701;Q8TD47 P62701 52 63 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 3 0.00099087 47.189 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.0254 1.0367 18.068 4 Median 1.0551 1.1021 NaN 1 0 Median 0.99661 0.97525 NaN 1 0 Median 0.82472 0.93055 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2739 1.3939 NaN 1 0 Median NaN NaN NaN 0 0 Median 13935000 6829800 7105600 5178600 2521700 2656900 2903800 1497400 1406500 1867600 1168500 699050 0 0 0 3985400 1642200 2343200 0 0 0 20863 2593 21761 109643;109644;109645;109646 110921;110922;110923;110924 110924 4 LKYENEVALR LLQIDNARLAADDFRLKYENEVALRQSVEA ADDFRLKYENEVALRQSVEADINGLRRVLD R L K L R Q 1 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 1 1233.6717 P13645;CON__P13645 P13645 236 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 6.5063E-26 176.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 17 17 17 13 15 0.024314 0.021686 131.24 78 Median 0.019888 0.019907 179.29 15 15 Median 0.017307 0.01528 99.487 15 15 Median 0.039962 0.044505 124.86 14 14 Median 0.0093066 0.0087559 101.1 14 14 Median 0.019296 0.021238 105.12 9 9 Median 0.035315 0.029046 78.602 11 11 Median 7540400000 7422200000 118180000 1411500000 1388600000 22865000 1392300000 1374000000 18267000 797450000 763360000 34089000 1424600000 1406700000 17916000 1296100000 1281100000 14931000 1218500000 1208400000 10110000 + 20864 756 21762 109647;109648;109649;109650;109651;109652;109653;109654;109655;109656;109657;109658;109659;109660;109661;109662;109663;109664;109665;109666;109667;109668;109669;109670;109671;109672;109673;109674;109675;109676;109677;109678;109679;109680;109681;109682;109683;109684;109685;109686;109687;109688;109689;109690;109691;109692;109693;109694;109695;109696;109697;109698;109699;109700;109701;109702;109703;109704;109705;109706;109707;109708;109709;109710;109711;109712;109713;109714;109715;109716;109717;109718;109719;109720;109721;109722;109723;109724;109725;109726;109727;109728;109729;109730;109731;109732;109733;109734;109735;109736;109737;109738;109739;109740;109741;109742 110925;110926;110927;110928;110929;110930;110931;110932;110933;110934;110935;110936;110937;110938;110939;110940;110941;110942;110943;110944;110945;110946;110947;110948;110949;110950;110951;110952;110953;110954;110955;110956;110957;110958;110959;110960;110961;110962;110963;110964;110965;110966;110967;110968;110969;110970;110971;110972;110973;110974;110975;110976;110977;110978;110979;110980;110981;110982;110983;110984;110985;110986;110987;110988;110989;110990;110991;110992;110993;110994;110995;110996;110997;110998;110999;111000;111001;111002;111003;111004;111005;111006;111007;111008;111009;111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025;111026;111027;111028;111029;111030;111031;111032 110990 108 LKYFDKLN WKPGSETIIPDPAGKLKYFDKLN_______ IPDPAGKLKYFDKLN_______________ K L K L N - 0 0 1 1 0 0 0 0 0 0 2 2 0 1 0 0 0 0 1 0 0 0 8 2 1039.5702 Q13162 Q13162 264 271 PRDX4 Peroxiredoxin-4 yes yes 2 0.013158 92.47 By MS/MS By MS/MS 1 1 1.342 1.2911 2.228 2 Median 1.2533 1.271 NaN 1 0 Median 1.4371 1.3116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61719000 26200000 35519000 51556000 22170000 29386000 10163000 4029900 6133100 0 0 0 0 0 0 0 0 0 0 0 0 20865 2793 21763 109743;109744 111033;111034;111035;111036 111033 4 LKYSQSDLEQTK ELRQVQSQAHGLQMRLKYSQSDLEQTKTRH QMRLKYSQSDLEQTKTRHLALNLQEKSKLE R L K T K T 0 0 0 1 0 2 1 0 0 0 2 2 0 0 0 2 1 0 1 0 0 0 12 1 1438.7304 Q14683;G8JLG1 Q14683 712 723 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 2.5266E-05 99.568 By matching By MS/MS By MS/MS By MS/MS 1 2 2 4 1.1261 1.0718 16.685 9 Median 1.5956 1.6492 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87535 1.0055 9.6641 2 0 Median NaN NaN NaN 0 0 Median 1.0576 1.1375 8.4146 2 0 Median 1.1688 1.0499 8.579 4 0 Median 41920000 19091000 22829000 1065400 422920 642450 0 0 0 11002000 5712300 5289600 0 0 0 15545000 6773800 8770800 14308000 6182300 8126200 20866 2889 21764 109745;109746;109747;109748;109749;109750;109751;109752;109753 111037;111038;111039;111040;111041;111042;111043;111044;111045;111046;111047;111048;111049 111042 13 LLAAEQTVVR KTLSEEQEKANSVQKLLAAEQTVVRDLKSD NSVQKLLAAEQTVVRDLKSDLCESRQKSEQ K L L V R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1098.6397 O95613 O95613 2598 2607 PCNT Pericentrin yes yes 2 0.00036244 87.308 By MS/MS By matching 1 2 1.0842 0.90581 6.385 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85954 0.90286 NaN 1 0 Median 1.1542 0.95651 7.702 2 0 Median 4814900 2363600 2451300 0 0 0 0 0 0 0 0 0 0 0 0 2992000 1513900 1478100 1822900 849680 973230 20867 1782 21765 109754;109755;109756 111050 111050 1 LLAALLEDEGGSGR TTISSNLTEMSRGVKLLAALLEDEGGSGRP KLLAALLEDEGGSGRPLLQAAKGLAGAVSE K L L G R P 2 1 0 1 0 0 2 3 0 0 4 0 0 0 0 1 0 0 0 0 0 0 14 0 1399.7307 Q9Y490 Q9Y490 593 606 TLN1 Talin-1 yes yes 2 0.0004518 69.979 By MS/MS By matching 1 2 1.1235 0.95542 2.422 3 Median 0.9572 0.95542 NaN 1 0 Median 1.147 0.96758 3.2658 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5667600 2763200 2904400 2234200 1214400 1019800 3433400 1548800 1884600 0 0 0 0 0 0 0 0 0 0 0 0 20868 4441 21766 109757;109758;109759 111051 111051 1 LLAALLEDEGGSGRPLLQAAK TTISSNLTEMSRGVKLLAALLEDEGGSGRP EDEGGSGRPLLQAAKGLAGAVSELLRSAQP K L L A K G 4 1 0 1 0 1 2 3 0 0 6 1 0 0 1 1 0 0 0 0 0 0 21 1 2121.1794 Q9Y490 Q9Y490 593 613 TLN1 Talin-1 yes yes 2;3 6.9468E-26 151.74 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 1 1 1.0115 0.93467 37.351 9 Median 0.76353 0.76224 9.0793 3 0 Median 0.98772 0.91741 2.636 2 1 Median 1.0349 1.241 NaN 1 0 Median 1.0256 0.99013 NaN 1 0 Median 2.2189 2.5172 NaN 1 1 Median 1.291 1.1435 NaN 1 0 Median 85470000 43143000 42327000 42222000 23388000 18835000 35143000 16227000 18917000 6147300 2901300 3246000 176440 76173 100260 1561700 452010 1109700 219110 99640 119470 20869 4441 21767 109760;109761;109762;109763;109764;109765;109766;109767;109768 111052;111053;111054;111055;111056;111057;111058;111059;111060;111061 111060 10 LLAAVEAFYSPPSHDRPR PKDIRLPPPMPPSERLLAAVEAFYSPPSHD AVEAFYSPPSHDRPRNSEGWEQNGLYEFFR R L L P R N 3 2 0 1 0 0 1 0 1 0 2 0 0 1 3 2 0 0 1 1 0 0 18 1 2025.0432 J3QK89;Q8IWX8 J3QK89 697 714 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 4 7.2695E-05 42.813 By matching By MS/MS 1 1 0.49466 0.56863 4.7115 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45222 0.55 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54108 0.58789 NaN 1 0 Median NaN NaN NaN 0 0 Median 11141000 6759300 4381600 0 0 0 0 0 0 5321200 2979700 2341500 0 0 0 5819600 3779600 2040100 0 0 0 20870 1338 21768 109769;109770 111062;111063 111062 2 LLAAVKEDAAATK GELTTLIHQLQEKDKLLAAVKEDAAATKDR DKLLAAVKEDAAATKDRCKQLTQEMMTEKE K L L T K D 5 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 13 1 1299.7398 Q86UP2 Q86UP2 340 352 KTN1 Kinectin yes yes 3 0.00050022 51.726 By MS/MS 1 1.3833 1.393 NaN 1 Median 1.3833 1.393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2735500 983590 1752000 2735500 983590 1752000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20871 3280 21769 109771 111064 111064 1 LLACIASRPGQCGR AKISSLLEEQFQQGKLLACIASRPGQCGRA KLLACIASRPGQCGRADGYVLEGKELEFYL K L L G R A 2 2 0 0 2 1 0 2 0 1 2 0 0 0 1 1 0 0 0 0 0 0 14 1 1557.7868 Q5JR95;P62241 Q5JR95 151 164 RPS8 40S ribosomal protein S8 yes no 2;3 3.0957E-06 90.731 By MS/MS By matching 2 1 0.94768 0.80483 53.828 3 Median NaN NaN NaN 0 0 Median 0.94363 0.80139 0.60549 2 0 Median NaN NaN NaN 0 0 Median 2.3185 2.0358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24619000 11724000 12895000 0 0 0 23005000 11150000 11855000 0 0 0 1614100 573580 1040600 0 0 0 0 0 0 20872 2573 21770 109772;109773;109774 111065;111066;111067 111065 3 LLADLLHNVSQNIAAETR AQQLLCDEQAPQRQRLLADLLHNVSQNIAA DLLHNVSQNIAAETRAEDPPWFEGLESRFQ R L L T R A 3 1 2 1 0 1 1 0 1 1 4 0 0 0 0 1 1 0 0 1 0 0 18 0 1977.0643 B4DZS0;O76075 B4DZS0 142 159 DFFB DNA fragmentation factor subunit beta yes no 3 0.00056272 79.013 By MS/MS 1 1.3779 1.1503 NaN 1 Median NaN NaN NaN 0 0 Median 1.3779 1.1503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4052300 1353500 2698800 0 0 0 4052300 1353500 2698800 0 0 0 0 0 0 0 0 0 0 0 0 20873 611 21771 109775 111068 111068 0 LLADPTGAFGK TGEWGRAHKAEGKVRLLADPTGAFGKETDL GKVRLLADPTGAFGKETDLLLDDSLVSIFG R L L G K E 2 0 0 1 0 0 0 2 0 0 2 1 0 1 1 0 1 0 0 0 0 0 11 0 1088.5866 P30044 P30044 149 159 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 0.00013635 93.649 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 0.75569 0.69884 30.86 10 Median 0.72886 0.67385 4.2391 4 2 Median 1.259 1.0738 56.457 3 0 Plateau 0.83317 0.82662 25.958 2 1 Median 1.2392 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246190000 131610000 114580000 156570000 88724000 67844000 59123000 26414000 32708000 25898000 14385000 11512000 4603700 2087500 2516300 0 0 0 0 0 0 20874 2181 21772 109776;109777;109778;109779;109780;109781;109782;109783;109784;109785 111069;111070;111071;111072;111073;111074;111075;111076;111077;111078;111079 111077 11 LLADQAEAR MEHIHKLKADKARKKLLADQAEARRSKTKE DKARKKLLADQAEARRSKTKEARKRREERL K L L A R R 3 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 985.51926 J3QR09;J3KTE4;P84098 J3QR09 151 159 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 8.8603E-07 159.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 3 4 1.1928 1.0739 10.142 14 Median 1.0796 1.0341 6.5357 2 0 Median 1.1965 1.0041 3.7175 3 0 Median 1.2314 1.1823 NaN 1 0 Median 1.3034 1.0793 NaN 1 0 Median 1.1145 1.199 6.7292 3 0 Median 1.2662 1.0295 12.812 4 0 Median 191230000 85956000 105280000 84717000 38019000 46698000 25170000 11336000 13834000 38861000 17630000 21231000 2203400 871680 1331700 23826000 10997000 12829000 16456000 7102400 9353100 20875 1335 21773 109786;109787;109788;109789;109790;109791;109792;109793;109794;109795;109796;109797;109798;109799 111080;111081;111082;111083;111084;111085;111086;111087;111088;111089;111090;111091;111092;111093;111094;111095 111084 16 LLADVTHLLLK FNLTKQDLAAGMPVRLLADVTHLLLKAMEH MPVRLLADVTHLLLKAMEHFPNHQQLQKNC R L L L K A 1 0 0 1 0 0 0 0 1 0 5 1 0 0 0 0 1 0 0 1 0 0 11 0 1234.7649 A8DPD7;Q9C0D3 A8DPD7 403 413 ZYG11B Protein zyg-11 homolog B yes no 2 0.00015191 83.005 By MS/MS 1 1.2874 1.1256 NaN 1 Median NaN NaN NaN 0 0 Median 1.2874 1.1256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5006600 2214900 2791700 0 0 0 5006600 2214900 2791700 0 0 0 0 0 0 0 0 0 0 0 0 20876 537 21774 109800 111096;111097 111097 2 LLAEALEKR L L K R 2 1 0 0 0 0 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 1 1041.6182 REV__A0A3B3IS57 yes no 2 0.050917 34.808 By MS/MS 1 1.3359 1.4066 NaN 1 Median 1.3359 1.4066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2251700 977160 1274500 2251700 977160 1274500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 20877 4514 21775 109801 111098 111098 1 LLAEALNQVTQR KCREKVANLCGINQKLLAEALNQVTQRASR NQKLLAEALNQVTQRASRRSDSASSEPVGI K L L Q R A 2 1 1 0 0 2 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 12 0 1354.7569 Q05655 Q05655 286 297 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes yes 2 0.00040015 142.43 By MS/MS By matching By matching 1 2 1 0.99508 0.90822 35.39 4 Median 1.0346 0.97912 NaN 1 0 Median 1.1297 0.98573 22.213 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47318 0.5085 NaN 1 0 Median NaN NaN NaN 0 0 Median 14577000 7183800 7392700 8227200 3816900 4410300 3364000 1410700 1953200 0 0 0 0 0 0 2985400 1956200 1029200 0 0 0 20878 2718 21776 109802;109803;109804;109805 111099 111099 1 LLAEGHPDPDAELQR DRKREKEELEEIRQRLLAEGHPDPDAELQR LLAEGHPDPDAELQRMEQEAERRRQPQIKQ R L L Q R M 2 1 0 2 0 1 2 1 1 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1659.8216 P49756 P49756 550 564 RBM25 RNA-binding protein 25 yes yes 2;3 1.4799E-09 113.22 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 2 0.81648 0.74245 18.757 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68077 0.74245 12.521 5 0 Median 0.93419 0.79925 25.383 4 0 Median 0.70565 0.72212 22.341 2 1 Median 0.87835 0.71171 10.369 2 0 Median 376780000 211910000 164880000 0 0 0 0 0 0 260610000 148980000 111630000 82913000 43883000 39030000 24671000 14540000 10130000 8595500 4505700 4089800 20879 2397 21777 109806;109807;109808;109809;109810;109811;109812;109813;109814;109815;109816;109817;109818 111100;111101;111102;111103;111104;111105;111106;111107;111108;111109;111110;111111;111112;111113;111114;111115;111116;111117;111118;111119;111120;111121;111122;111123;111124;111125;111126 111118 27 LLAEILR KIQEENVIPREKTLRLLAEILREGNQEVPF IPREKTLRLLAEILREGNQEVPFDVPELWY R L L L R E 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 7 0 826.52764 P42704 P42704 995 1001 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0024248 126.24 By MS/MS By matching By MS/MS By matching By matching 1 3 1 2 6 1.4569 1.2863 15.736 13 Median 1.1607 1.1173 NaN 1 0 Median 1.6116 1.3672 10.385 3 0 Median 1.3971 1.5352 NaN 1 0 Median 1.5667 1.343 4.7181 2 0 Median NaN NaN NaN 0 0 Median 1.339 1.1581 16.145 6 0 Median 53106000 22443000 30663000 18276000 8555000 9721300 26585000 10305000 16280000 3474800 1520100 1954600 1352600 611170 741450 0 0 0 3417500 1451500 1965900 20880 2315 21778 109819;109820;109821;109822;109823;109824;109825;109826;109827;109828;109829;109830;109831 111127;111128 111127 2 LLAELPASVHALTGVDLSK VLSGDNSKVTSEVNRLLAELPASVHALTGV LPASVHALTGVDLSKIPLIKKATGVQV___ R L L S K I 3 0 0 1 0 0 1 1 1 0 5 1 0 0 1 2 1 0 0 2 0 0 19 0 1933.0884 J3QLD9;E7EMK3;Q14254 J3QLD9 398 416 FLOT2 Flotillin-2 yes no 2;3 1.1341E-17 131.53 By matching By MS/MS By MS/MS By matching 1 5 2 2 1.2558 1.0776 39.844 10 Median 0.55676 0.54492 NaN 1 0 Median 1.2589 1.0803 2.4968 5 0 Median 1.3956 1.3456 39.671 2 0 Median 1.6301 1.4541 73.665 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85609000 39934000 45676000 1424500 939410 485090 33229000 14634000 18596000 50083000 24018000 26066000 872070 342530 529550 0 0 0 0 0 0 20881 856 21779 109832;109833;109834;109835;109836;109837;109838;109839;109840;109841 111129;111130;111131;111132;111133;111134;111135 111134 7 LLAELSSPFVNQR LVLKNGVLAYIGNFRLLAELSSPFVNQRPK FRLLAELSSPFVNQRPKAVVTGNMDLFSSL R L L Q R P 1 1 1 0 0 1 1 0 0 0 3 0 0 1 1 2 0 0 0 1 0 0 13 0 1472.7987 S4R3V7;S4R434;Q96MV1 S4R3V7 28 40 TMEM56-RWDD3;TMEM56 Transmembrane protein 56 yes no 2 0.0013887 54.608 By MS/MS By MS/MS By matching 1 1 1 1.2414 1.1717 13.612 3 Median 1.157 1.1717 NaN 1 0 Median 1.2502 1.0637 NaN 1 0 Median 1.2414 1.3917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6537600 2662400 3875200 2850900 1096600 1754300 2875700 1222900 1652900 810880 342910 467970 0 0 0 0 0 0 0 0 0 20882 3704 21780 109842;109843;109844 111136;111137 111137 1 LLAELVR GKGSKPLMPTSTILRLLAELVRSYVGIATL MPTSTILRLLAELVRSYVGIATLIANYSYT R L L V R S 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 812.51199 Q7Z6Z7;A5YM72 Q7Z6Z7 2074 2080 HUWE1;CARNS1 E3 ubiquitin-protein ligase HUWE1;Carnosine synthase 1 yes no 2 0.016172 69.383 By matching By MS/MS 2 2 1.2447 1.1192 12.043 4 Median 1.0416 1.0442 3.0823 2 0 Median 1.4993 1.2546 9.4161 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18256000 8077700 10178000 5304500 2643900 2660600 12951000 5433800 7517700 0 0 0 0 0 0 0 0 0 0 0 0 20883 3253 21781 109845;109846;109847;109848 111138 111138 1 LLAEPVPGIK ______________________________ KETQRLLAEPVPGIKAEPDESNARYFHVVI R L L I K A 1 0 0 0 0 0 1 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 10 0 1035.6328 P61088;F8VSD4;F8VV71;Q5JXB2;F8VZ29 P61088 15 24 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 2 0.00036476 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 4 2 2 0.87106 0.75256 39.917 15 Median 0.71746 0.66228 9.7139 2 0 Median 0.89754 0.75002 9.5667 2 0 Median 0.98273 0.92518 8.849 3 0 Plateau 0.85465 0.73074 5.6102 4 0 Median 2.044 2.2501 0.10745 2 0 Median 0.90926 0.74122 2.1475 2 0 Median 492180000 252490000 239700000 195130000 108980000 86154000 134490000 63676000 70817000 99109000 48715000 50394000 52089000 27026000 25063000 7446300 2060100 5386200 3914400 2033100 1881300 20884 2544 21782 109849;109850;109851;109852;109853;109854;109855;109856;109857;109858;109859;109860;109861;109862;109863;109864;109865 111139;111140;111141;111142;111143;111144;111145;111146;111147;111148;111149;111150;111151;111152;111153;111154;111155;111156;111157;111158;111159;111160 111140 22 LLAEPVPGIKAEPDESNAR ______________________________ PVPGIKAEPDESNARYFHVVIAGPQDSPFE R L L A R Y 3 1 1 1 0 0 3 1 0 1 2 1 0 0 3 1 0 0 0 1 0 0 19 1 2005.048 P61088;F8VSD4;F8VV71;Q5JXB2;F8VZ29 P61088 15 33 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 3 3.62E-08 70.235 By MS/MS By MS/MS By MS/MS 1 1 1 0.83979 0.87213 54.653 3 Median 0.67765 0.66875 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83979 0.87213 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6971 1.913 NaN 1 0 Median NaN NaN NaN 0 0 Median 24878000 15479000 9399100 11421000 8205400 3215500 0 0 0 8340500 4709800 3630700 0 0 0 5116600 2563700 2553000 0 0 0 20885 2544 21783 109866;109867;109868 111161;111162;111163;111164 111162 4 LLAETHYQLGLAYGYNSQYDEAVAQFSK SCLNLQEQYLEAHDRLLAETHYQLGLAYGY GYNSQYDEAVAQFSKSIEVIENRMAVLNEQ R L L S K S 4 0 1 1 0 3 2 2 1 0 4 1 0 1 0 2 1 0 4 1 0 0 28 0 3178.5247 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 582 609 NASP Nuclear autoantigenic sperm protein yes no 3 2.0667E-10 50.499 By MS/MS By matching 2 1 0.99538 0.95451 25.259 3 Median 1.1159 1.0998 20.039 2 0 Median 0.85989 0.76565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5830100 2840100 2990000 5475500 2633900 2841600 354580 206230 148350 0 0 0 0 0 0 0 0 0 0 0 0 20886 2376 21784 109869;109870;109871 111165;111166;111167 111166 3 LLAETVAPAVR IVAQVWPFLGQYMEKLLAETVAPAVRGSNP YMEKLLAETVAPAVRGSNPHLQTFTFTRVE K L L V R G 3 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 11 0 1138.671 Q9BSJ8;F8VZB1 Q9BSJ8 160 170 ESYT1 Extended synaptotagmin-1 yes no 2 0.0001696 111.95 By MS/MS By MS/MS By matching 1 3 1 1.0798 0.92011 11.02 5 Median 0.9381 0.9015 NaN 1 0 Median 1.1113 0.94136 13.996 3 0 Median NaN NaN NaN 0 0 Median 1.0798 0.92011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73356000 34835000 38521000 45175000 22034000 23141000 26719000 12177000 14542000 0 0 0 1462100 624300 837810 0 0 0 0 0 0 20887 3816 21785 109872;109873;109874;109875;109876 111168;111169;111170;111171;111172;111173;111174 111170 7 LLAEVTLK EKLGEKERSELRKRKLLAEVTLKTYWVSKG SELRKRKLLAEVTLKTYWVSKGSAFSTSIS K L L L K T 1 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 8 0 885.55352 Q9Y285;K7ER00;K7ER16;K7EPH2 Q9Y285 164 171 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 0.013601 52.716 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1.2403 1.1204 25.214 7 Median 1.1193 1.0889 27.349 2 0 Median 1.2723 1.1076 9.3519 2 0 Median 1.0919 1.1204 NaN 1 0 Median 1.2403 1.0672 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3077 1.9745 NaN 1 0 Median 12181000 5543600 6637200 4898100 2193000 2705100 2450000 1179900 1270100 2996300 1340200 1656100 1583800 737850 845910 0 0 0 252620 92681 159940 20888 4379 21786 109877;109878;109879;109880;109881;109882;109883 111175;111176;111177 111175 3 LLAHEIFEK KYFSAKSGVYCGPLKLLAHEIFEKSNAAGV YCGPLKLLAHEIFEKSNAAGVPCDLVTGEE K L L E K S 1 0 0 0 0 0 2 0 1 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1098.6073 Q8IYB8 Q8IYB8 235 243 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.016111 57.859 By MS/MS By MS/MS By matching 3 4 1 1.008 1.0011 17.954 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91085 1.0011 1.9121 3 0 Plateau 1.2383 1.0665 8.073 4 1 Median NaN NaN NaN 0 0 Median 0.77408 0.64704 NaN 1 0 Median 36231000 17756000 18476000 0 0 0 0 0 0 17177000 8934400 8243000 18667000 8593400 10073000 0 0 0 387210 227950 159260 20889 3342 21787 109884;109885;109886;109887;109888;109889;109890;109891 111178;111179 111179 2 LLAHVRPPVSK KLRGRSFMNNWEVYKLLAHVRPPVSKSGSH EVYKLLAHVRPPVSKSGSHTVAVMNVGAPA K L L S K S 1 1 0 0 0 0 0 0 1 0 2 1 0 0 2 1 0 0 0 2 0 0 11 1 1215.7452 A0A2R8Y891;P08237;F8VZI0 A0A2R8Y891 490 500 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2;3 0.0001171 71.159 By MS/MS By MS/MS By matching By MS/MS 4 2 1 1 0.88092 0.89792 38.16 8 Median 0.85207 0.86911 8.7716 4 0 Median 1.0072 1.0042 8.2169 2 0 Median 0.44698 0.47568 NaN 1 0 Median 1.9599 1.8834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16948000 8588100 8359500 6173400 3254000 2919400 9027400 4316800 4710600 1148800 813970 334830 597920 203320 394600 0 0 0 0 0 0 20890 390 21788 109892;109893;109894;109895;109896;109897;109898;109899 111180;111181;111182;111183;111184;111185 111183 6 LLAILYSIVDSR TSNHLLGPKPFPLDRLLAILYSIVDSRVAP LDRLLAILYSIVDSRVAPTANIFSQITSLV R L L S R V 1 1 0 1 0 0 0 0 0 2 3 0 0 0 0 2 0 0 1 1 0 0 12 0 1361.7919 O43913 O43913 362 373 ORC5 Origin recognition complex subunit 5 yes yes 2 0.001303 54.608 By matching By MS/MS 2 1 1.2028 1.0783 3.2429 3 Median NaN NaN NaN 0 0 Median 1.2091 1.0813 0.38739 2 0 Median 1.0318 1.0224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8450500 3929200 4521300 0 0 0 353370 162840 190530 8097100 3766400 4330800 0 0 0 0 0 0 0 0 0 20891 1599 21789 109900;109901;109902 111186;111187 111187 2 LLAITELLQQK TLSNERGAQQHVLKKLLAITELLQQKQNQY VLKKLLAITELLQQKQNQYTKTNDVR____ K L L Q K Q 1 0 0 0 0 2 1 0 0 1 4 1 0 0 0 0 1 0 0 0 0 0 11 0 1268.7704 E9PGC0;P20936 E9PGC0 860 870 RASA1 Ras GTPase-activating protein 1 yes no 2 0.00086719 62.2 By matching By MS/MS 1 1 1.0388 0.97713 16.202 2 Median 0.85779 0.87136 NaN 1 0 Median 1.258 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2192200 1055000 1137300 753580 430770 322810 1438700 624180 814480 0 0 0 0 0 0 0 0 0 0 0 0 20892 922 21790 109903;109904 111188 111188 1 LLALGQGAWDMIDSQVFKEPK ETLPRDSPDLLLLLRLLALGQGAWDMIDSQ GAWDMIDSQVFKEPKMEVELITRFLPMLMS R L L P K M 2 0 0 2 0 2 1 2 0 1 3 2 1 1 1 1 0 1 0 1 0 0 21 1 2345.209 Q8WX92 Q8WX92 344 364 NELFB Negative elongation factor B yes yes 3 0.039303 12.303 By matching By MS/MS 1 1 1.2979 1.2234 24.655 2 Median 1.5355 1.4564 NaN 1 0 Median 1.097 1.0276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6384500 2947600 3436900 3074500 1306400 1768100 3309900 1641200 1668800 0 0 0 0 0 0 0 0 0 0 0 0 20893 3514 21791 109905;109906 111189 111189 1 LLALLVIPPAITPGTDQLGMFTHK IHMLTHLAEALHQARLLALLVIPPAITPGT AITPGTDQLGMFTHKEFEQLAPVLDGFSLM R L L H K E 2 0 0 1 0 1 0 2 1 2 5 1 1 1 3 0 3 0 0 1 0 0 24 0 2545.4342 Q9BWS9;E9PPA0 Q9BWS9 221 244 CHID1 Chitinase domain-containing protein 1 yes no 3 0.0089327 19.549 By MS/MS 1 0.85851 0.73545 NaN 1 Median NaN NaN NaN 0 0 Median 0.85851 0.73545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1464200 844710 619480 0 0 0 1464200 844710 619480 0 0 0 0 0 0 0 0 0 0 0 0 20894 3874 21792 109907 111190 111190 1 LLALNPDAVELFK ELRKILVSLIEVAQKLLALNPDAVELFKKA QKLLALNPDAVELFKKANAMLDEDEDERVD K L L F K K 2 0 1 1 0 0 1 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 13 0 1441.8181 Q9BSL1 Q9BSL1 166 178 UBAC1 Ubiquitin-associated domain-containing protein 1 yes yes 2 0.0013302 55.567 By MS/MS By MS/MS By matching 2 2 1 1.043 0.89332 31.431 5 Median 0.69129 0.68792 36.949 2 0 Median 1.056 0.90449 2.7102 2 1 Median 1.2603 1.2726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11865000 5916800 5948100 2486700 1341800 1144900 7524300 3799200 3725100 1854000 775820 1078200 0 0 0 0 0 0 0 0 0 20895 3818 21793 109908;109909;109910;109911;109912 111191;111192;111193 111192 3 LLALNSLYSPK FWSHETRLPSNTLDRLLALNSLYSPKIEVH TLDRLLALNSLYSPKIEVHFLSLATNFLLE R L L P K I 1 0 1 0 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 11 0 1217.702 P78527 P78527 2539 2549 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00011205 136.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 4 3 3 0.98804 0.96593 31.35 18 Median 0.79926 0.78755 5.052 2 0 Median 0.97098 0.9811 6.6962 2 0 Median 0.80223 0.86627 8.8537 4 0 Median 1.2877 1.2241 10.108 4 0 Median 0.84053 0.86918 41.207 3 0 Median 1.2448 1.0669 52.736 3 0 Median 466530000 247260000 219270000 103810000 54821000 48989000 72320000 33519000 38801000 255510000 141980000 113530000 10529000 4425100 6104200 21747000 11497000 10250000 2614700 1017500 1597100 20896 2647 21794 109913;109914;109915;109916;109917;109918;109919;109920;109921;109922;109923;109924;109925;109926;109927;109928;109929;109930 111194;111195;111196;111197;111198;111199;111200;111201;111202;111203;111204;111205;111206;111207;111208;111209;111210;111211;111212;111213;111214 111202 21 LLALSGPGGGR LTGRDPNDVRPIQARLLALSGPGGGRGRGS IQARLLALSGPGGGRGRGSLLLRRGFSDSG R L L G R G 1 1 0 0 0 0 0 4 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 0 996.57163 Q9H307;G3V5F0;G3V579 Q9H307 44 54 PNN Pinin yes no 2 0.00011247 124.98 By matching By MS/MS By MS/MS By MS/MS 1 2 4 4 1.1051 0.95249 25.429 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1051 1.1799 NaN 1 0 Median 1.1234 0.84889 5.1204 2 0 Median 0.90895 0.95421 24.166 4 0 Median 1.1649 0.95741 35.482 4 0 Median 43294000 20790000 22504000 0 0 0 0 0 0 1094900 542570 552370 2439100 1146300 1292800 32247000 15594000 16653000 7512800 3506700 4006000 20897 3950 21795 109931;109932;109933;109934;109935;109936;109937;109938;109939;109940;109941 111215;111216;111217;111218;111219;111220;111221;111222;111223;111224;111225 111216 11 LLALYNQGHIKPHIDSVWPFEK YLDGEVELVSGVVARLLALYNQGHIKPHID GHIKPHIDSVWPFEKVADAMKQMQEKKNVG R L L E K V 1 0 1 1 0 1 1 1 2 2 3 2 0 1 2 1 0 1 1 1 0 0 22 1 2604.3853 Q99536;K7ESA3 Q99536 345 366 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 4 0.057444 16.096 By MS/MS By MS/MS 1 1 0.79425 0.72747 17.25 2 Median 0.69248 0.64393 NaN 1 0 Median 0.91098 0.82184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18300000 9860800 8438900 10522000 6135000 4386800 7777800 3725700 4052100 0 0 0 0 0 0 0 0 0 0 0 0 20898 3750 21796 109942;109943 111226;111227;111228 111228 3 LLAMAVIR LTEAKLREELREKDRLLAMAVIRKKHGM__ ELREKDRLLAMAVIRKKHGM__________ R L L I R K 2 1 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 8 0 885.54699 Q96EK4 Q96EK4 302 309 THAP11 THAP domain-containing protein 11 yes yes 2 0.012201 55.441 By matching By MS/MS By matching 1 2 1 0.97704 0.9709 31.338 4 Median 1.0989 1.0765 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75892 0.76979 18.224 2 0 Median 1.6167 1.4173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3890700 1951100 1939500 827620 355530 472090 0 0 0 2839900 1507300 1332600 223150 88282 134870 0 0 0 0 0 0 20899 3635 21797 109944;109945;109946;109947 111229;111230 111230 2 LLANMVYQYK ELRNKERISVAAASKLLANMVYQYKGMGLS AAASKLLANMVYQYKGMGLSMGTMICGWDK K L L Y K G 1 0 1 0 0 1 0 0 0 0 2 1 1 0 0 0 0 0 2 1 0 0 10 0 1241.6478 P28074;H0YJM8 P28074 141 150 PSMB5 Proteasome subunit beta type-5 yes no 2 0.00039425 91.065 By MS/MS By MS/MS By MS/MS By matching 5 3 2 1 1.1246 0.96985 18.066 11 Median 1.136 1.0563 21.899 5 3 Median 1.2189 1.0238 4.1451 3 0 Median 0.82966 0.77829 16.655 2 1 Median 0.99099 0.81758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 203420000 100750000 102670000 165410000 80439000 84971000 16356000 7675100 8680800 20892000 12254000 8638100 763800 380090 383710 0 0 0 0 0 0 20900 2162 21798;21799 109948;109949;109950;109951;109952;109953;109954;109955;109956;109957;109958 111231;111232;111233;111234;111235;111236;111237;111238;111239;111240;111241;111242;111243;111244;111245;111246 111242 917 16 LLAPEAGSHPQQTQK HSSAGQEGEDTLRRRLLAPEAGSHPQQTQK LLAPEAGSHPQQTQKLEEIKENAQDTMRQI R L L Q K L 2 0 0 0 0 3 1 1 1 0 2 1 0 0 2 1 1 0 0 0 0 0 15 0 1603.8318 Q8NFQ8 Q8NFQ8 181 195 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 3 2.6625E-05 80.706 By MS/MS By MS/MS 1 1 1.0621 0.96046 24.798 2 Median 1.1832 1.1445 NaN 1 0 Median 0.95341 0.80598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7771900 3786300 3985600 1727600 769270 958310 6044300 3017100 3027300 0 0 0 0 0 0 0 0 0 0 0 0 20901 3440 21800 109959;109960 111247;111248;111249 111248 3 LLAQDQGQGAPLLEPAP GYTPVCRALHSLLLRLLAQDQGQGAPLLEP AQDQGQGAPLLEPAP_______________ R L L A P - 3 0 0 1 0 3 1 2 0 0 4 0 0 0 3 0 0 0 0 0 0 0 17 0 1716.9046 Q15102;M0R1K3 Q15102 215 231 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 2.3134E-07 71.555 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33207000 0 0 33207000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20902 2928 21801 109961 111250 111250 1 LLAQLLGTSEEDSMVGTLYDK KLSSAGLIYLHFGHKLLAQLLGTSEEDSMV GTSEEDSMVGTLYDKMYENFVEEVDAVDNG K L L D K M 1 0 0 2 0 1 2 2 0 0 5 1 1 0 0 2 2 0 1 1 0 0 21 0 2282.1352 Q9HB07;F8VQQ3 Q9HB07 143 163 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 3.9344E-14 95.651 By MS/MS 2 1.0996 0.93516 1.7195 2 Median NaN NaN NaN 0 0 Median 1.0996 0.93516 1.7195 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1693500 805340 888210 0 0 0 1693500 805340 888210 0 0 0 0 0 0 0 0 0 0 0 0 20903 4014 21802 109962;109963 111251;111252 111251 2 LLAQQLVSPVK NVHAHRYRHPGHIHKLLAQQLVSPVKWEQT HIHKLLAQQLVSPVKWEQTMHAIYERKKGR K L L V K W 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 11 0 1194.7336 Q8IVS2 Q8IVS2 315 325 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.00019975 96.331 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1353 1.0637 13.563 4 Median 0.8934 0.83418 NaN 1 0 Median 1.3111 1.1177 NaN 1 0 Median 0.98315 1.0231 NaN 1 0 Median 1.3216 1.1059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15111000 7809700 7301100 5291000 2743000 2548000 1128700 449220 679510 8081900 4348700 3733200 609050 268680 340370 0 0 0 0 0 0 20904 3319 21803 109964;109965;109966;109967 111253;111254;111255;111256 111256 4 LLASAGQDNVVR HMGAVWTMKFSHCGRLLASAGQDNVVRIWA CGRLLASAGQDNVVRIWALKNAFDYFNNMR R L L V R I 2 1 1 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 2 0 0 12 0 1241.6728 H7BY83;Q5JSH3 H7BY83 425 436 WDR44 WD repeat-containing protein 44 yes no 2 0.00077584 90.108 By MS/MS 1 1.3293 1.1216 NaN 1 Median NaN NaN NaN 0 0 Median 1.3293 1.1216 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5158100 2117400 3040700 0 0 0 5158100 2117400 3040700 0 0 0 0 0 0 0 0 0 0 0 0 20905 1246 21804 109968 111257 111257 1 LLASANLEEVTMK KKPPTDEELKETIKKLLASANLEEVTMKQI KKLLASANLEEVTMKQICKKVYENYPTYDL K L L M K Q 2 0 1 0 0 0 2 0 0 0 3 1 1 0 0 1 1 0 0 1 0 0 13 0 1417.7487 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 332 344 DEK Protein DEK yes no 2 4.0181E-09 143.89 By matching By MS/MS By MS/MS By MS/MS By matching 1 8 6 1 3 1.1264 1.0022 15.675 18 Median NaN NaN NaN 0 0 Median 0.88422 0.77406 NaN 1 0 Median 0.94893 0.89245 19.124 7 0 Median 1.1915 1.0178 3.478 6 1 Median 1.0062 0.96129 NaN 1 0 Median 1.1203 0.94102 23.725 3 0 Median 822670000 410410000 412270000 0 0 0 310670 172540 138130 664340000 337000000 327340000 133590000 61315000 72276000 20588000 10220000 10367000 3841100 1696600 2144500 20906 1166 21805;21806 109969;109970;109971;109972;109973;109974;109975;109976;109977;109978;109979;109980;109981;109982;109983;109984;109985;109986;109987 111258;111259;111260;111261;111262;111263;111264;111265;111266;111267;111268;111269;111270;111271;111272;111273;111274;111275;111276;111277;111278 111273 387 21 LLASFFDR CHVSAGTRHKVLLRRLLASFFDRNTLANSC HKVLLRRLLASFFDRNTLANSCGTGIRSST R L L D R N 1 1 0 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 967.51272 Q96RE7 Q96RE7 402 409 NACC1 Nucleus accumbens-associated protein 1 yes yes 2 0.021359 45.718 By matching By MS/MS By matching 1 2 1 1.1675 1.0592 11.88 4 Median 1.2899 1.2686 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0839 1.0592 8.2034 2 0 Median 1.1427 0.98161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10390000 5093200 5296600 497540 192870 304680 0 0 0 9654600 4793700 4860900 237720 106710 131010 0 0 0 0 0 0 20907 3725 21807 109988;109989;109990;109991 111279;111280 111279 2 LLASIAEDYRK TMRCVCRFDNRTCRKLLASIAEDYRKRAPY TCRKLLASIAEDYRKRAPYIAYLTRCRQGL K L L R K R 2 1 0 1 0 0 1 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 11 1 1277.698 Q14C86;F8W9S7 Q14C86 1199 1209 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 0.012483 38.021 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20908 2907 21808 109992 111281 111281 1 LLASINSTVR EVKGAVYSMVEFNGKLLASINSTVRLYEWT EFNGKLLASINSTVRLYEWTTEKELRTECN K L L V R L 1 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1072.6241 Q16531;F5GY55 Q16531 880 889 DDB1 DNA damage-binding protein 1 yes no 2 1.3976E-24 178.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 6 3 3 1.3085 1.1195 24.345 18 Median 1.2879 1.2088 11.056 3 1 Median 1.3299 1.1166 4.0775 4 0 Median 0.84969 0.92708 8.0362 5 1 Median 1.7306 1.4588 22.567 3 0 Plateau NaN NaN NaN 0 0 Median 2.046 1.7565 21.338 3 0 Median 327360000 147110000 180250000 73328000 29348000 43980000 100840000 44316000 56521000 96496000 52763000 43734000 53522000 19665000 33857000 0 0 0 3174200 1019400 2154800 20909 2985 21809 109993;109994;109995;109996;109997;109998;109999;110000;110001;110002;110003;110004;110005;110006;110007;110008;110009;110010;110011 111282;111283;111284;111285;111286;111287;111288;111289;111290;111291;111292;111293;111294;111295;111296;111297;111298;111299;111300;111301;111302 111287 19 LLASLYR ASMLWLLQQEMVTWRLLASLYRDRIQSALE QQEMVTWRLLASLYRDRIQSALEEESVFAV R L L Y R D 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 7 0 834.49634 P57740 P57740 221 227 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.010821 81.381 By MS/MS By MS/MS By matching 1 1 2 1.4784 1.3436 14.574 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.481 1.5686 NaN 1 0 Median 1.2985 1.1043 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5758 1.3436 4.1068 2 0 Median 23576000 10664000 12913000 0 0 0 0 0 0 19666000 9013600 10652000 3190800 1394100 1796600 0 0 0 719940 255950 464000 20910 2518 21810 110012;110013;110014;110015 111303;111304 111303 2 LLASMLAK SKQSKMRKRGSIVCKLLASMLAKAGLTHII RGSIVCKLLASMLAKAGLTHIITMDLHQKE K L L A K A 2 0 0 0 0 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 0 0 8 0 845.50446 B4DP31;Q14558;C9J168;C9JUN4;C9JKT9 B4DP31 43 50 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 2 0.029451 39.646 By MS/MS By matching 1 1 1.2363 1.1283 23.976 2 Median 1.02 0.95231 NaN 1 0 Median 1.4985 1.3367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5648900 2805100 2843800 5200700 2630500 2570200 448230 174590 273640 0 0 0 0 0 0 0 0 0 0 0 0 20911 600 21811 110016;110017 111305;111306 111305 2 LLASQGSQGAPLLSTPK SMDPAMLERLLSLDRLLASQGSQGAPLLST ASQGSQGAPLLSTPKRERMVLMKTVEEKDL R L L P K R 2 0 0 0 0 2 0 2 0 0 4 1 0 0 2 3 1 0 0 0 0 0 17 0 1666.9254 Q14807;H3BRB3 Q14807 449 465 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 3.4132E-07 91.858 By MS/MS By matching By matching 1 1 2 0.73486 0.66623 12.461 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64476 0.64559 NaN 1 0 Median 0.66661 0.57264 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86487 0.72852 8.1892 2 0 Median 21536000 11928000 9608000 0 0 0 0 0 0 19782000 11047000 8734700 504810 292940 211870 0 0 0 1249900 588520 661370 20912 1228 21812 110018;110019;110020;110021 111307;111308 111308 2 LLASQLEEIK NDLQDNYLSEQNKNKLLASQLEEIKLQIKK QNKNKLLASQLEEIKLQIKKQKELENGEVE K L L I K L 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1142.6547 Q86V48 Q86V48 335 344 LUZP1 Leucine zipper protein 1 yes yes 2 0.01267 41.029 By matching By matching By MS/MS 1 1 4 1.1986 1.0292 34.611 6 Median NaN NaN NaN 0 0 Median 1.0197 0.91777 NaN 1 0 Median 2.1469 2.1698 NaN 1 0 Median 1.1986 1.0292 16.064 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9875500 4118100 5757300 0 0 0 487490 240030 247460 1014700 275670 739040 8373300 3602400 4770800 0 0 0 0 0 0 20913 3285 21813 110022;110023;110024;110025;110026;110027 111309;111310;111311 111311 3 LLASTLVHSVK PLDDSNRPASLTKDRLLASTLVHSVKKEQE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP R L L V K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 11 0 1166.7023 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 570 580 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.00015337 82.749 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 3 4 1.1398 1.0527 14.974 10 Median 1.0491 1.0126 NaN 1 0 Median 1.6171 1.4323 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5057 1.2967 NaN 1 0 Median 1.0811 1.0943 9.1684 3 1 Median 1.192 0.98069 9.9548 4 1 Median 91918000 45026000 46893000 16800000 9137700 7661900 645710 320390 325320 0 0 0 1296000 555540 740480 51888000 25425000 26463000 21289000 9586700 11703000 20914 4175 21814 110028;110029;110030;110031;110032;110033;110034;110035;110036;110037;110038 111312;111313;111314;111315;111316;111317;111318;111319;111320;111321;111322;111323 111315 12 LLASTLVHSVKK PLDDSNRPASLTKDRLLASTLVHSVKKEQE KDRLLASTLVHSVKKEQEFRSIFDHIKLPQ R L L K K E 1 0 0 0 0 0 0 0 1 0 3 2 0 0 0 2 1 0 0 2 0 0 12 1 1294.7973 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 570 581 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 0.00012916 75.739 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 0.97698 0.98784 22.538 11 Median 0.97927 1.0229 9.0101 2 0 Median NaN NaN NaN 0 0 Median 1.0213 1.1826 6.0176 2 0 Median NaN NaN NaN 0 0 Median 0.94594 1.0236 29.881 4 0 Median 0.8946 0.80357 10.153 3 0 Median 137960000 73038000 64921000 9496300 5343300 4153100 0 0 0 24858000 13065000 11794000 0 0 0 90407000 48165000 42242000 13198000 6465100 6732600 20915 4175 21815 110039;110040;110041;110042;110043;110044;110045;110046;110047;110048;110049 111324;111325;111326;111327;111328;111329;111330;111331;111332;111333;111334;111335;111336 111335 13 LLASTTPEEILEK VVLDKGGKSREKVVKLLASTTPEEILEKLK VKLLASTTPEEILEKLKKEAKKT_______ K L L E K L 1 0 0 0 0 0 3 0 0 1 3 1 0 0 1 1 2 0 0 0 0 0 13 0 1442.7868 Q8WUR7;H3BQZ5 Q8WUR7 133 145 C15orf40 UPF0235 protein C15orf40 yes no 2 0.00021121 81.017 By MS/MS By MS/MS By matching 1 1 1 0.85935 0.8205 10.639 3 Median 0.80466 0.76081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85935 0.8205 NaN 1 0 Median 1.1224 0.93863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20377000 11046000 9330700 4170500 2336900 1833600 0 0 0 16002000 8621600 7380100 204810 87747 117070 0 0 0 0 0 0 20916 3495 21816 110050;110051;110052 111337;111338;111339;111340;111341 111340 5 LLATASFTK TDEMTHKETNEQEERLLATASFTKSSRSSR NEQEERLLATASFTKSSRSSRTRSSKAILL R L L T K S 2 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 2 0 0 0 0 0 9 0 950.54368 Q8WYP5;H7C4S1 Q8WYP5 2084 2092 AHCTF1 Protein ELYS yes no 2 0.0032081 66.692 By matching By MS/MS 2 2 1.0705 1.0377 27.345 4 Median NaN NaN NaN 0 0 Median 0.94487 0.794 25.582 2 0 Median 1.0705 1.1781 5.6714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14006000 6203600 7802400 0 0 0 5593600 2610500 2983100 8412400 3593100 4819300 0 0 0 0 0 0 0 0 0 20917 3524 21817 110053;110054;110055;110056 111342 111342 1 LLATEQEDAAVAK DPVAILKRQLEEKEKLLATEQEDAAVAKSK EKLLATEQEDAAVAKSKLRELNKEMAAEKA K L L A K S 4 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1357.7089 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 708 720 RRBP1 Ribosome-binding protein 1 yes no 2 7.1543E-14 123.63 By MS/MS By MS/MS By MS/MS 2 2 2 1.2676 1.1949 31.788 3 Median NaN NaN NaN 0 0 Median 1.0303 0.94283 33.504 2 1 Median NaN NaN NaN 0 0 Median 1.5574 1.361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13612000 5867500 7744500 0 0 0 4079100 2172800 1906200 0 0 0 9532900 3694600 5838300 0 0 0 0 0 0 20918 4222 21818 110057;110058;110059;110060;110061;110062 111343;111344;111345;111346;111347;111348 111344 6 LLATFFDR CHLCAGVKHKVLLRRLLATFFDRNTLANSC HKVLLRRLLATFFDRNTLANSCGTGIRSST R L L D R N 1 1 0 1 0 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 8 0 981.52837 Q96BF6 Q96BF6 379 386 NACC2 Nucleus accumbens-associated protein 2 yes yes 2 0.012659 54.549 By MS/MS By matching 1 1 1.0418 1.0014 2.6454 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92769 0.98279 NaN 1 0 Median 1.1701 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1884900 919350 965530 0 0 0 0 0 0 1793000 875090 917890 91904 44260 47644 0 0 0 0 0 0 20919 3606 21819 110063;110064 111349;111350 111350 2 LLAVAATAPPDAPNREEVFDER QEVSDVFSDTTTPIKLLAVAATAPPDAPNR APPDAPNREEVFDERAANFENHSGKLGATA K L L E R A 5 2 1 2 0 0 3 0 0 0 2 0 0 1 3 0 1 0 0 2 0 0 22 1 2380.2023 P18206 P18206 608 629 VCL Vinculin yes yes 3 6.1254E-14 82.586 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 1 1 0.68173 0.67934 35.343 9 Median 0.65416 0.69818 3.8692 2 0 Median 0.67876 0.65438 28.326 4 2 Median 0.55017 0.66913 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0243 1.1129 NaN 1 0 Median 1.4568 1.317 NaN 1 0 Median 81535000 51140000 30395000 46682000 28675000 18007000 11768000 7034500 4733600 20509000 14082000 6427400 0 0 0 2221700 1166100 1055600 354770 182880 171890 20920 2057 21820 110065;110066;110067;110068;110069;110070;110071;110072;110073 111351;111352;111353;111354;111355;111356;111357;111358 111356 8 LLAVTGEQAQQAR LVIIGDRQLSKGTTRLLAVTGEQAQQAREL TRLLAVTGEQAQQARELGQSLAQEVKAATE R L L A R E 3 1 0 0 0 3 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1383.747 Q5JTZ9 Q5JTZ9 778 790 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 5.2865E-14 125.56 By MS/MS By MS/MS By matching 1 3 1 1.8642 1.6759 47.068 4 Median 0.7198 0.69599 NaN 1 0 Median 1.934 1.6759 0.25131 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8001 1.9548 NaN 1 0 Median NaN NaN NaN 0 0 Median 44373000 16871000 27503000 5162600 3115100 2047500 6255400 2195200 4060200 0 0 0 0 0 0 32955000 11560000 21395000 0 0 0 20921 3054 21821 110074;110075;110076;110077;110078 111359;111360;111361;111362 111360 4 LLCGLLAER SIGKIGGAQNRSYSKLLCGLLAERLRISPD NRSYSKLLCGLLAERLRISPDRVYINYYDM K L L E R L 1 1 0 0 1 0 1 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 9 0 1043.5798 P14174 P14174 79 87 MIF Macrophage migration inhibitory factor yes yes 2 0.00050769 119.29 By MS/MS By MS/MS By MS/MS 1 2 1 1.2308 1.1344 8.7168 4 Median 1.078 1.0402 NaN 1 0 Median 1.4675 1.2225 1.973 2 1 Median 1.0577 1.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 382670000 167650000 215020000 123990000 61096000 62891000 208960000 82541000 126420000 49722000 24008000 25714000 0 0 0 0 0 0 0 0 0 20922 2001 21822 110079;110080;110081;110082 111363;111364;111365;111366;111367;111368;111369;111370;111371 111365 9 LLCNFMR NHIGISIAGLTADARLLCNFMRQECLDSRF AGLTADARLLCNFMRQECLDSRFVFDRPLP R L L M R Q 0 1 1 0 1 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 7 0 952.46228 P25786;F5GX11;B4DEV8 P25786 83 89 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2 0.032742 62.842 By MS/MS By MS/MS 1 2 1.0552 0.92343 15.207 3 Median 0.97512 0.92343 NaN 1 1 Median 1.2073 1.0157 20.051 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11451000 5300100 6151400 4915500 2679600 2235900 6535900 2620500 3915400 0 0 0 0 0 0 0 0 0 0 0 0 20923 2136 21823 110083;110084;110085 111372;111373 111372 2 LLDAESEDRPK EMEFRSAQIADLQQKLLDAESEDRPKQRWE LQQKLLDAESEDRPKQRWENIATILEAKCA K L L P K Q 1 1 0 2 0 0 2 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 1 1271.6357 O95239;Q2VIQ3 O95239 841 851 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2;3 4.9119E-05 89.548 By MS/MS By MS/MS By matching 1 4 1 0.90551 0.83589 16.782 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0762 1.0342 17.254 3 0 Plateau NaN NaN NaN 0 0 Median 0.84471 0.74563 NaN 1 0 Median 4143400 2018600 2124800 0 0 0 0 0 0 0 0 0 3805700 1841700 1964000 0 0 0 337740 176900 160830 20924 1757 21824 110086;110087;110088;110089;110090;110091 111374;111375;111376;111377;111378 111377 5 LLDAQLATGGIVDPR QAMKKELIPTEEALRLLDAQLATGGIVDPR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY R L L P R L 2 1 0 2 0 1 0 2 0 1 3 0 0 0 1 0 1 0 0 1 0 0 15 0 1537.8464 Q15149;H0YDN1 Q15149 3936 3950 PLEC Plectin yes no 2 4.0278E-09 118.48 By MS/MS By matching By MS/MS By MS/MS 1 1 1 4 0.8735 0.724 42.157 5 Median 0.88352 0.85655 NaN 1 0 Median 0.89288 0.724 NaN 1 0 Median 0.30663 0.3219 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.72923 0.76988 26.849 2 1 Median NaN NaN NaN 0 0 Median 71987000 42309000 29679000 33288000 17203000 16085000 10995000 5779400 5215300 21204000 15954000 5250200 0 0 0 6499800 3372100 3127700 0 0 0 20925 2933 21825 110092;110093;110094;110095;110096;110097;110098 111379;111380;111381;111382;111383;111384;111385 111380 7 LLDAQLSTGGIVDPSK QALKKGLIPREQGLRLLDAQLSTGGIVDPS LDAQLSTGGIVDPSKSHRVPLDVACARGCL R L L S K S 1 0 0 2 0 1 0 2 0 1 3 1 0 0 1 2 1 0 0 1 0 0 16 0 1612.8672 Q15149;H0YDN1 Q15149 3270 3285 PLEC Plectin yes no 2 2.2863E-10 159.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 1 1.0945 1.0141 20.479 8 Median 0.80603 0.79195 26.288 2 0 Median 1.2719 1.1309 NaN 1 0 Median 0.92268 0.98654 NaN 1 0 Median 1.1236 1.0425 NaN 1 0 Median 1.1807 1.2246 12.903 2 0 Median 1.1379 0.97945 NaN 1 0 Median 84337000 40138000 44199000 52215000 24571000 27643000 13987000 5945600 8041200 11154000 6288800 4865000 580610 251340 329270 5829900 2829800 3000100 571590 251670 319930 20926 2933 21826 110099;110100;110101;110102;110103;110104;110105;110106 111386;111387;111388;111389;111390;111391;111392 111386 7 LLDAVDTYIPVPAR LEGRDPELGLKSVQKLLDAVDTYIPVPARD KLLDAVDTYIPVPARDLEKPFLLPVEAVYS K L L A R D 2 1 0 2 0 0 0 0 0 1 2 0 0 0 2 0 1 0 1 2 0 0 14 0 1541.8453 P49411 P49411 239 252 TUFM Elongation factor Tu, mitochondrial yes yes 2 2.2346E-08 159.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 3 3 0.99203 0.85835 22.365 14 Median 0.71779 0.68977 6.0923 2 0 Median 0.99203 0.84996 4.6851 2 0 Median 0.7426 0.71599 9.4336 3 0 Median 1.1303 0.97841 NaN 1 0 Median 1.1276 1.1359 15.399 3 2 Plateau 1.4618 1.1811 2.6401 3 0 Plateau 139050000 72468000 66585000 76670000 41883000 34788000 24046000 11408000 12638000 20784000 11882000 8902200 5679200 2452800 3226400 5981800 2746800 3235000 5891800 2096900 3794900 20927 2382 21827 110107;110108;110109;110110;110111;110112;110113;110114;110115;110116;110117;110118;110119;110120 111393;111394;111395;111396;111397;111398;111399;111400;111401;111402;111403;111404;111405;111406;111407;111408;111409;111410;111411;111412;111413;111414;111415 111395 23 LLDAVVPFLPLQR NPHHGFSNSGIMEERLLDAVVPFLPLQRHH ERLLDAVVPFLPLQRHHVRHCVLNELAQLG R L L Q R H 1 1 0 1 0 1 0 0 0 0 4 0 0 1 2 0 0 0 0 2 0 0 13 0 1479.8813 Q5JU69 Q5JU69 253 265 TOR2A Torsin-2A yes yes 2 0.0042388 82.749 By MS/MS By MS/MS 1 1 0.83889 0.75148 9.04 2 Median 0.7306 0.70494 NaN 1 1 Median 0.96322 0.80108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12595000 6409000 6186300 2434000 1180900 1253100 10161000 5228000 4933200 0 0 0 0 0 0 0 0 0 0 0 0 20928 3055 21828 110121;110122 111416;111417 111416 1 LLDDAMAADK EAFRELSKMDPEGSKLLDDAMAADKSDEWF PEGSKLLDDAMAADKSDEWFAKHNKPKASG K L L D K S 3 0 0 3 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 10 0 1061.5063 Q9HC38;F6TLX2;I3L1I0 Q9HC38 289 298 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.025495 35.511 By MS/MS 1 1.5375 1.2908 NaN 1 Median NaN NaN NaN 0 0 Median 1.5375 1.2908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3629200 1471700 2157500 0 0 0 3629200 1471700 2157500 0 0 0 0 0 0 0 0 0 0 0 0 20929 4025 21829 110123 111418 111418 1 LLDDLFR KSEKKEKAQEEPPAKLLDDLFRKTKAAPCI AQEEPPAKLLDDLFRKTKAAPCIYWLPLTD K L L F R K 0 1 0 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 7 0 890.48617 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 1152 1158 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.031276 49.358 By MS/MS By matching 2 1 1.0987 1.094 3.2908 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0831 1.1204 4.2286 2 0 Median 1.2717 1.094 NaN 1 0 Median 19197000 8716900 10480000 0 0 0 0 0 0 0 0 0 0 0 0 14778000 6749600 8028200 4419200 1967400 2451900 20930 4560 21830 110124;110125;110126 111419;111420;111421;111422 111421 4 LLDDNRELLVTETQEVVK ELNLAPTDVLEALNRLLDDNRELLVTETQE DNRELLVTETQEVVKAHPRFMLFATQNPPG R L L V K A 0 1 1 2 0 1 3 0 0 0 4 1 0 0 0 0 2 0 0 3 0 0 18 1 2113.1267 Q9NU22;Q5T795 Q9NU22 1167 1184 MDN1 Midasin yes no 3 3.7725E-05 47.204 By matching By MS/MS 1 2 1.2817 1.2475 14.306 3 Median NaN NaN NaN 0 0 Median 1.2817 1.2475 NaN 1 0 Median 1.1735 1.3779 18.531 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11089000 4808800 6279900 0 0 0 1082900 406110 676760 10006000 4402700 5603200 0 0 0 0 0 0 0 0 0 20931 4112 21831 110127;110128;110129 111423;111424 111424 2 LLDEAIQAVK ______________________________ DEQEKLLDEAIQAVKVQSFQMKRCLDKNKL K L L V K V 2 0 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1098.6285 Q96QK1;I3L4S0;A0A1W2PP10;A0A3B3ITD4 Q96QK1 15 24 VPS35 Vacuolar protein sorting-associated protein 35 yes no 2 0.00040021 77.732 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1276 1.0012 16.022 4 Median 1.0146 0.91403 NaN 1 0 Median 1.2531 1.0968 NaN 1 0 Median 0.87442 0.89852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4699 1.2586 NaN 1 0 Median 51979000 24550000 27430000 15274000 7677100 7597100 27367000 12213000 15154000 8198100 3962800 4235300 0 0 0 0 0 0 1139800 696700 443070 20932 3722 21832 110130;110131;110132;110133 111425;111426 111425 2 LLDEDEIR LCCYLKRESVELALKLLDEDEIRGYKLHVE SVELALKLLDEDEIRGYKLHVEVAKFQLKG K L L I R G 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1001.5029 O43719;Q5H918;Q5H919 O43719 200 207 HTATSF1 HIV Tat-specific factor 1 yes no 2 0.0032009 100.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.95647 0.9401 25.201 5 Median 0.95647 0.92485 NaN 1 0 Median 0.79977 0.73437 35.754 2 0 Median 0.88555 0.9401 NaN 1 0 Median 1.3063 1.1101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27785000 12814000 14970000 4940600 2206900 2733700 7644300 3186900 4457300 11138000 5630700 5507600 4061500 1789800 2271700 0 0 0 0 0 0 20933 1586 21833 110134;110135;110136;110137;110138 111427;111428;111429;111430;111431 111428 5 LLDEEEATDNDLR ELLQRNREILDESLRLLDEEEATDNDLRAK LRLLDEEEATDNDLRAKFKERWQRTPSNEL R L L L R A 1 1 1 3 0 0 3 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 13 0 1531.7002 Q8WUM4 Q8WUM4 457 469 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 1.8696E-16 171.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1 1.0848 0.9615 44.231 9 Median 0.87237 0.83666 31.331 2 1 Median 1.0512 0.90863 NaN 1 0 Median 1.2324 1.3094 NaN 1 0 Median 1.1084 0.94939 18.331 2 1 Median 1.6475 1.7235 86.769 2 0 Median 1.181 0.9615 NaN 1 0 Median 58862000 26251000 32611000 25006000 10898000 14108000 11323000 5520700 5802700 9072600 4105200 4967400 2831000 1236100 1594900 8752200 3591300 5160900 1876700 899690 977060 20934 3493 21834 110139;110140;110141;110142;110143;110144;110145;110146;110147 111432;111433;111434;111435;111436;111437;111438;111439;111440;111441;111442;111443;111444 111432 13 LLDEEISR SSLPNFCGIFNHLERLLDEEISRVRKDMYN IFNHLERLLDEEISRVRKDMYNDTLNGSTE R L L S R V 0 1 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 973.50803 Q96PU8 Q96PU8 44 51 QKI Protein quaking yes yes 2 0.0007286 151.29 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 3 2 1.2357 1.0438 17.135 11 Median 1.1187 1.1184 34.256 2 0 Median 1.3928 1.1796 NaN 1 0 Median 0.8597 0.94153 10.184 3 0 Median 1.3668 1.14 6.8171 3 0 Median NaN NaN NaN 0 0 Median 1.1751 1.018 22.639 2 0 Median 61183000 30502000 30681000 5810300 2570700 3239600 1223500 536000 687550 38283000 20178000 18105000 14424000 6579500 7844600 0 0 0 1442600 638180 804470 20935 3715 21835 110148;110149;110150;110151;110152;110153;110154;110155;110156;110157;110158 111445;111446;111447;111448;111449;111450;111451;111452;111453;111454;111455;111456 111447 12 LLDELSPNTAPHK PIKIWTSKQGEGMVKLLDELSPNTAPHKYY VKLLDELSPNTAPHKYYIGFRYVHPLTEEA K L L H K Y 1 0 1 1 0 0 1 0 1 0 3 1 0 0 2 1 1 0 0 0 0 0 13 0 1433.7514 P22830;K7ELX4;A0A499FJN5 P22830 146 158 FECH Ferrochelatase, mitochondrial yes no 2 0.0011215 73.632 By MS/MS 1 0.43839 0.45988 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43839 0.45988 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6404000 4832900 1571100 0 0 0 0 0 0 6404000 4832900 1571100 0 0 0 0 0 0 0 0 0 20936 2106 21836 110159 111457 111457 1 LLDELTLEGVAR NLFSQTLSLGSQKERLLDELTLEGVARYMQ KERLLDELTLEGVARYMQSERC________ R L L A R Y 1 1 0 1 0 0 2 1 0 0 4 0 0 0 0 0 1 0 0 1 0 0 12 0 1327.7347 F8WF57;F8WDM4;C9JR33;C9J3U7;F8WCF4;C9JZQ0;B5MCS1;A0A0A0MRF5;E7EWX6;A0A087WYM3;Q8IXJ6 F8WF57 21 32 SIRT2 NAD-dependent protein deacetylase sirtuin-2 yes no 2 0.041159 45.137 By MS/MS 1 0.9725 0.84874 NaN 1 Median NaN NaN NaN 0 0 Median 0.9725 0.84874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7350900 3027900 4322900 0 0 0 7350900 3027900 4322900 0 0 0 0 0 0 0 0 0 0 0 0 20937 83 21837 110160 111458 111458 1 LLDEQEQEDEEASTGSHLK LELEGGDEAEDLTKKLLDEQEQEDEEASTG QEQEDEEASTGSHLKLIVDAFLQQLPNCVN K L L L K L 1 0 0 2 0 2 5 1 1 0 3 1 0 0 0 2 1 0 0 0 0 0 19 0 2156.971 Q9HAU5 Q9HAU5 547 565 UPF2 Regulator of nonsense transcripts 2 yes yes 3 0.026756 14.161 By matching By matching By MS/MS 1 1 1 1.05 1.0086 28.711 3 Median 1.05 1.0086 NaN 1 0 Median 0.79603 0.69512 NaN 1 0 Median 1.1286 1.2228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10305000 4995300 5310000 5591300 2935200 2656100 1148800 617250 531580 3565100 1442800 2122300 0 0 0 0 0 0 0 0 0 20938 4011 21838 110161;110162;110163 111459 111459 1 LLDEQFAVLR RLAERESQEQGLRQRLLDEQFAVLRGAAAE GLRQRLLDEQFAVLRGAAAEAAGILQDAVS R L L L R G 1 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 1 0 0 10 0 1202.6659 O75146 O75146 616 625 HIP1R Huntingtin-interacting protein 1-related protein yes yes 2 0.0018916 62.2 By MS/MS By matching By matching 1 1 1 1.2482 1.0706 16.855 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98325 1.0706 NaN 1 0 Median 1.5996 1.426 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2482 1.0597 NaN 1 0 Median 1899900 915460 984460 0 0 0 0 0 0 1709200 824220 885020 72107 31663 40444 0 0 0 118580 59575 59003 20939 1647 21839 110164;110165;110166 111460 111460 1 LLDESESAASSR KKYNLHPGVTDYMDRLLDESESAASSRAPS MDRLLDESESAASSRAPSPPPTASNSSNSQ R L L S R A 2 1 0 1 0 0 2 0 0 0 2 0 0 0 0 4 0 0 0 0 0 0 12 0 1263.5943 Q8N108 Q8N108 363 374 MIER1 Mesoderm induction early response protein 1 yes yes 2 4.3735E-05 95.573 By matching By MS/MS By MS/MS 1 1 1 0.89579 0.80985 7.3991 3 Median 0.89579 0.89134 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75985 0.80985 NaN 1 0 Median 0.91423 0.7706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4282100 2171500 2110600 938910 508330 430580 0 0 0 2812700 1438300 1374500 530450 224920 305530 0 0 0 0 0 0 20940 3353 21840 110167;110168;110169 111461;111462;111463 111461 3 LLDEVFFSEK NDGVLLAAERRNIHKLLDEVFFSEKIYKLN RNIHKLLDEVFFSEKIYKLNEDMACSVAGI K L L E K I 0 0 0 1 0 0 2 0 0 0 2 1 0 2 0 1 0 0 0 1 0 0 10 0 1225.6231 P25789;H0YMZ1;H0YN18;H0YL69;H0YMI6;H0YMA1;H0YKT8;H0YLC2;H0YLS6 P25789 55 64 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type yes no 2 0.0026987 59.35 By MS/MS By matching By MS/MS By matching By matching 3 1 2 2 1 1.0878 0.98555 25.889 9 Median 1.0606 0.99048 12.488 3 0 Plateau 1.2372 1.0288 NaN 1 0 Median 1.1404 1.0893 8.4007 2 0 Median 1.1219 0.9357 1.8137 2 0 Median NaN NaN NaN 0 0 Median 0.58129 0.47722 NaN 1 0 Median 53941000 24556000 29385000 14701000 6969400 7732100 30015000 13273000 16742000 7295300 3339200 3956100 1569600 774630 794960 0 0 0 359650 199390 160270 20941 2138 21841 110170;110171;110172;110173;110174;110175;110176;110177;110178 111464;111465;111466;111467 111465 4 LLDFGSLSNLQVTQPTVGMNFK QEIIEVDPDTKEMLKLLDFGSLSNLQVTQP SNLQVTQPTVGMNFKTPRGPV_________ K L L F K T 0 0 2 1 0 2 0 2 0 0 4 1 1 2 1 2 2 0 0 2 0 0 22 0 2408.241 H3BNC9;P08708 H3BNC9 557 578 RPS17 40S ribosomal protein S17 yes no 2;3 1.9131E-07 50.145 By matching By MS/MS By MS/MS 1 2 1 0.99258 1.0674 39.667 4 Median NaN NaN NaN 0 0 Median 1.1704 1.018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99258 1.1253 0.769 2 0 Median 0.62353 0.49508 NaN 1 0 Median 9281500 4583700 4697800 0 0 0 101540 45966 55573 0 0 0 0 0 0 6960200 3459500 3500700 2219700 1078200 1141500 20942 1214 21842 110179;110180;110181;110182 111468;111469;111470 111469 3 LLDFSYEQYQK TMAAEVLSRRCVLMRLLDFSYEQYQKALRQ VLMRLLDFSYEQYQKALRQSAGAVVIILPR R L L Q K A 0 0 0 1 0 2 1 0 0 0 2 1 0 1 0 1 0 0 2 0 0 0 11 0 1432.6874 Q969V3;K7EMW4 Q969V3 89 99 NCLN Nicalin yes no 2 0.00017515 78.934 By MS/MS By matching By matching 1 1 2 0.82144 0.70438 33.068 4 Median 1.287 1.2035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51858 0.60445 NaN 1 0 Median 0.82144 0.69921 22.678 2 0 Median 10075000 4604200 5470800 7880200 3367500 4512800 0 0 0 0 0 0 0 0 0 1798200 1029000 769150 396680 207780 188900 20943 3589 21843 110183;110184;110185;110186 111471;111472 111471 2 LLDFTQAQILQGLR DLISLTKQLHCYNERLLDFTQAQILQGLRK RLLDFTQAQILQGLRKGVDVQRFTADDQYK R L L L R K 1 1 0 1 0 3 0 1 0 1 4 0 0 1 0 0 1 0 0 0 0 0 14 0 1614.9093 A2RRP1;H0Y5G7 A2RRP1 1639 1652 NBAS Neuroblastoma-amplified sequence yes no 2 0.0002615 75.294 By MS/MS By matching By matching 2 1 1 1.1455 1.1282 11.261 4 Median 1.1454 1.14 4.6101 2 0 Median 1.0911 0.91979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3517 1.1535 NaN 1 0 Median 5380300 2519800 2860400 3675700 1661400 2014200 1609200 815360 793850 0 0 0 0 0 0 0 0 0 95405 43015 52390 20944 500 21844 110187;110188;110189;110190 111473;111474 111473 2 LLDGLAQAQAEGR LRKKHQRKAVTLTRRLLDGLAQAQAEGRCR RRLLDGLAQAQAEGRCRLRPGALGGAADVE R L L G R C 3 1 0 1 0 2 1 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 0 1340.7048 Q01970 Q01970 992 1004 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 2.5582E-10 177.57 By MS/MS By MS/MS 1 2 1.2283 1.08 13.417 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2148 1.3359 NaN 1 0 Median 1.2403 1.0611 2.503 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14951000 6196300 8754700 0 0 0 0 0 0 8275900 3317600 4958300 6675100 2878700 3796400 0 0 0 0 0 0 20945 2695 21845 110191;110192;110193 111475;111476;111477 111476 3 LLDGPSTEKDLDEK EVTSLAKSLIKSWKKLLDGPSTEKDLDEKK KLLDGPSTEKDLDEKKKEPAITSQNSPEAR K L L E K K 0 0 0 3 0 0 2 1 0 0 3 2 0 0 1 1 1 0 0 0 0 0 14 1 1558.7726 A0A1W2PPZ5;P23193;A0A1W2PRL9;E5RIS7 A0A1W2PPZ5 76 89 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.0029625 65.395 By MS/MS 1 0.85772 0.76376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85772 0.76376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224700 1180900 1043900 0 0 0 0 0 0 0 0 0 2224700 1180900 1043900 0 0 0 0 0 0 20946 341 21846 110194 111478;111479 111479 2 LLDHMQNTPGFMYK KLGNGINIIVATPGRLLDHMQNTPGFMYKN RLLDHMQNTPGFMYKNLQCLVIDEADRILD R L L Y K N 0 0 1 1 0 1 0 1 1 0 2 1 2 1 1 0 1 0 1 0 0 0 14 0 1693.7956 Q9NVP1 Q9NVP1 312 325 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 0.0015547 37.156 By MS/MS By MS/MS 1 3 0.99204 0.96796 39.297 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88024 0.87824 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.118 1.0669 47.255 3 0 Median NaN NaN NaN 0 0 Median 53972000 32111000 21861000 0 0 0 0 0 0 24055000 16469000 7585700 0 0 0 29917000 15642000 14276000 0 0 0 20947 4137 21847 110195;110196;110197;110198 111480;111481 111480 2 LLDHRPVIQGETR SAHLIIKDLGEIHSRLLDHRPVIQGETRYF SRLLDHRPVIQGETRYFVKEFENED_____ R L L T R Y 0 2 0 1 0 1 1 1 1 1 2 0 0 0 1 0 1 0 0 1 0 0 13 1 1532.8423 A0A0D9SEU2;A0A0A0MTN6;G5E931;H3BN57;Q8TDH9 A0A0D9SEU2 46 58 BLOC1S5;BLOC1S5-TXNDC5 Biogenesis of lysosome-related organelles complex 1 subunit 5 yes no 3 0.00051026 51.211 By MS/MS By MS/MS 1 1 1.064 1.0138 6.0826 2 Median 0.90847 0.9711 NaN 1 0 Median 1.2462 1.0583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3154900 1480600 1674300 2558300 1214700 1343600 596640 265940 330700 0 0 0 0 0 0 0 0 0 0 0 0 20948 198 21848 110199;110200 111482;111483;111484 111482 3 LLDIEGLYSK QADAINAFGESLQKKLLDIEGLYSKVRSRY SLQKKLLDIEGLYSKVRSRYSFIQALVRRI K L L S K V 0 0 0 1 0 0 1 1 0 1 3 1 0 0 0 1 0 0 1 0 0 0 10 0 1149.6281 Q92621 Q92621 1979 1988 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0031972 57.59 By MS/MS By matching 2 1 1.0349 1.0732 5.2098 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.1047 4.0859 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2491 1.0247 NaN 1 0 Median 27379000 12655000 14724000 0 0 0 0 0 0 24645000 11342000 13303000 0 0 0 0 0 0 2733400 1312600 1420900 20949 3547 21849 110201;110202;110203 111485;111486 111486 2 LLDISELDMVGAGR IPPSRTLLRKERGVKLLDISELDMVGAGRE KLLDISELDMVGAGREAKRRRKTLDAEVVE K L L G R E 1 1 0 2 0 0 1 2 0 1 3 0 1 0 0 1 0 0 0 1 0 0 14 0 1487.7654 H0Y3X6;A0A0C4DFX9;Q9H3P2;C9JEM7;H7C2C7;C9JHL4 H0Y3X6 260 273 NELFA Negative elongation factor A yes no 2 3.4453E-08 141.95 By MS/MS By MS/MS By matching 1 2 1 1.0807 0.97156 5.6339 4 Median 0.97607 0.96744 NaN 1 0 Median 1.1642 1.0077 4.562 2 0 Median NaN NaN NaN 0 0 Median 1.0362 0.90681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11640000 4824500 6815200 3179400 1533300 1646200 8088200 3129900 4958300 0 0 0 372090 161330 210760 0 0 0 0 0 0 20950 231 21850 110204;110205;110206;110207 111487;111488;111489;111490;111491 111490 5 LLDIVAR QGSTSKHEFQAETKKLLDIVARSLYSEKEV EFQAETKKLLDIVARSLYSEKEVFIRELIS K L L A R S 1 1 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 798.49634 Q12931 Q12931 97 103 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 0.017757 64.803 By MS/MS By MS/MS 1 1 1.376 1.3925 7.6804 2 Median 1.5259 1.4702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2409 1.3189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7126700 3065800 4060900 4110000 1631700 2478300 0 0 0 3016600 1434100 1582600 0 0 0 0 0 0 0 0 0 20951 2771 21851 110208;110209 111492;111493;111494 111493 3 LLDKVELMLPEK MSAAGARGLRATYHRLLDKVELMLPEKLRP YHRLLDKVELMLPEKLRPLYNHPAGPRTVF R L L E K L 0 0 0 1 0 0 2 0 0 0 4 2 1 0 1 0 0 0 0 1 0 0 12 1 1426.8105 Q5R3B4;O95563 Q5R3B4 16 27 MPC2 Mitochondrial pyruvate carrier 2 yes no 2 0.00062391 89.266 By MS/MS 2 0.84656 0.90626 23.065 2 Median 0.84656 0.90626 23.065 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8245100 3897600 4347500 8245100 3897600 4347500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20952 1779 21852 110210;110211 111495 111495 1 LLDLELAPSASVVLLPAGR MFPRREFTKEDYKKKLLDLELAPSASVVLL ELAPSASVVLLPAGRPTASIVHSSSGDIWT K L L G R P 3 1 0 1 0 0 1 1 0 0 6 0 0 0 2 2 0 0 0 2 0 0 19 0 1933.1248 Q92575 Q92575 380 398 UBXN4 UBX domain-containing protein 4 yes yes 2 2.4331E-05 49.423 By MS/MS 1 0.43905 0.37931 NaN 1 Median NaN NaN NaN 0 0 Median 0.43905 0.37931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1170900 774700 396250 0 0 0 1170900 774700 396250 0 0 0 0 0 0 0 0 0 0 0 0 20953 3538 21853 110212 111496 111496 1 LLDLELTSR VDGEKYQKGTRVRLRLLDLELTSRFLGATT TRVRLRLLDLELTSRFLGATTDTTVLEANA R L L S R F 0 1 0 1 0 0 1 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 9 0 1058.5972 Q9Y2Q9;H0YAT2;E5RGC7;E5RK86;E5RFH3 Q9Y2Q9 144 152 MRPS28 28S ribosomal protein S28, mitochondrial yes no 2 0.00055412 114.89 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2672 1.1295 9.0268 4 Median 1.1169 1.0868 NaN 1 0 Median 1.474 1.2237 NaN 1 0 Median 1.0568 0.99705 NaN 1 0 Median 1.4376 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14375000 6531300 7843400 9869400 4481200 5388200 2075600 876840 1198800 2156300 1054100 1102200 273430 119130 154300 0 0 0 0 0 0 20954 4387 21854 110213;110214;110215;110216 111497;111498;111499;111500 111497 4 LLDLENIQIPEAPPPIPK KSDLDTLLSMEMKLRLLDLENIQIPEAPPP LENIQIPEAPPPIPKEPSSYDFVYHYG___ R L L P K E 1 0 1 1 0 1 2 0 0 3 3 1 0 0 5 0 0 0 0 0 0 0 18 0 1996.1245 Q5JVZ5;Q96JJ3;Q5JW01 Q5JVZ5 689 706 ELMO2 Engulfment and cell motility protein 2 yes no 2 0.040978 21.759 By matching By MS/MS 1 1 0.28471 0.2956 13.551 2 Median 0.32234 0.32532 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.25148 0.26859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1000500 775330 225120 329660 227060 102590 0 0 0 670800 548270 122530 0 0 0 0 0 0 0 0 0 20955 3058 21855 110217;110218 111501 111501 1 LLDLLEGLTGTSLPK PPINDMFTDLKDGRKLLDLLEGLTGTSLPK LLDLLEGLTGTSLPKERGSTRVHALNNVNR K L L P K E 0 0 0 1 0 0 1 2 0 0 6 1 0 0 1 1 2 0 0 0 0 0 15 0 1568.9025 P46939;A0A0D9SG57;A0A0A0MSM3 P46939 66 80 UTRN Utrophin yes no 2 1.0674E-07 143.17 By MS/MS By MS/MS By matching 2 2 1 0.87985 0.77513 11.843 5 Median 0.76857 0.75586 22.698 2 0 Median 0.9079 0.79556 3.6794 2 0 Median 0.70094 0.75435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7052800 3652200 3400700 1717300 895460 821830 5272600 2720800 2551800 62974 35923 27051 0 0 0 0 0 0 0 0 0 20956 2349 21856 110219;110220;110221;110222;110223 111502;111503;111504;111505 111504 4 LLDLVQQSCNYK NPKAYPLADAHLTKKLLDLVQQSCNYKQLR TKKLLDLVQQSCNYKQLRKGANEATKTLNR K L L Y K Q 0 0 1 1 1 2 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 12 0 1479.7392 P55769 P55769 22 33 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2 1.3418E-21 196.88 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.4199 1.1662 13.193 5 Median 1.6044 1.4792 NaN 1 1 Median 1.4199 1.1662 NaN 1 0 Median 1.1046 1.0917 8.3928 2 0 Median 1.4426 1.1835 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109670000 48894000 60772000 2975400 1003900 1971500 30814000 12161000 18653000 75240000 35453000 39787000 636710 276180 360520 0 0 0 0 0 0 20957 2501 21857 110224;110225;110226;110227;110228 111506;111507;111508;111509;111510;111511;111512 111509 7 LLDLVVQPVPR FFGTPISKASQKISRLLDLVVQPVPRPSQC KISRLLDLVVQPVPRPSQCSEFIQQSSMKS R L L P R P 0 1 0 1 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 3 0 0 11 0 1247.7602 Q8WYP5 Q8WYP5 1117 1127 AHCTF1 Protein ELYS yes yes 2 0.00036308 71.223 By MS/MS By matching By matching 2 2 1 0.81827 0.7204 8.9847 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6769 0.7435 4.4638 2 0 Median 0.89634 0.78767 14.788 2 0 Median NaN NaN NaN 0 0 Median 0.85613 0.70656 NaN 1 0 Median 6197800 3609600 2588200 0 0 0 0 0 0 5886000 3436600 2449400 241700 136230 105470 0 0 0 70038 36700 33338 20958 3524 21858 110229;110230;110231;110232;110233 111513;111514 111514 2 LLDLYESVDKQK NHINAKDDLPGVYQKLLDLYESVDKQKWCD YQKLLDLYESVDKQKWCDVCKKLVDLYYQE K L L Q K W 0 0 0 2 0 1 1 0 0 0 3 2 0 0 0 1 0 0 1 1 0 0 12 1 1449.7715 Q6PGP7;D6RCE2 Q6PGP7 103 114 TTC37 Tetratricopeptide repeat protein 37 yes no 3 0.001288 44.616 By MS/MS 1 0.99125 0.9697 NaN 1 Median 0.99125 0.9697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6596800 3197000 3399900 6596800 3197000 3399900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20959 3169 21859 110234 111515 111515 1 LLDMDGIIVEK TLSIPITPERTDIARLLDMDGIIVEKQRRL DIARLLDMDGIIVEKQRRLATLLGLQAPPT R L L E K Q 0 0 0 2 0 0 1 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 11 0 1244.6686 Q14152 Q14152 341 351 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00028738 79.148 By MS/MS By matching By matching By matching 5 4 2 1 1.1422 1.1159 29.271 11 Median 1.1214 1.1159 12.884 5 0 Median 1.0136 0.89815 12.445 3 0 Median 1.4883 1.6636 42.207 2 0 Median 1.8787 1.7023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107580000 49142000 58434000 74834000 34700000 40134000 27426000 12505000 14921000 5282600 1922300 3360300 33692 15085 18606 0 0 0 0 0 0 20960 2860 21860;21861 110235;110236;110237;110238;110239;110240;110241;110242;110243;110244;110245;110246 111516;111517;111518;111519;111520 111516 1542 5 LLDMGETDLMLAALR AEKIFRSNGVQLLQRLLDMGETDLMLAALR LLDMGETDLMLAALRTLVGICSEHQSRTVA R L L L R T 2 1 0 2 0 0 1 1 0 0 5 0 2 0 0 0 1 0 0 0 0 0 15 0 1660.8528 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 343 357 UNC45A Protein unc-45 homolog A yes no 2 9.4746E-10 150.94 By matching By MS/MS 1 1 1.1666 1.0866 1.4256 2 Median 1.095 1.0976 NaN 1 0 Median 1.2429 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6498800 2996200 3502600 1334500 711800 622680 5164300 2284400 2879900 0 0 0 0 0 0 0 0 0 0 0 0 20961 335 21862 110247;110248 111521;111522 111522 2 LLDNEDGENPQR AQAQRLMQLICYPHRLLDNEDGENPQRQRI PHRLLDNEDGENPQRQRIKRILQNLDQWTM R L L Q R Q 0 1 2 2 0 1 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 12 0 1398.6375 Q93074;Q7Z3Z5 Q93074 1330 1341 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 yes no 2 5.0111E-06 154.84 By MS/MS By MS/MS 1 1 0.83466 0.82243 12.81 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81749 0.9004 NaN 1 0 Median 0.85219 0.75121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6327000 3321300 3005700 0 0 0 0 0 0 5269000 2799500 2469400 1058100 521790 536270 0 0 0 0 0 0 20962 3578 21863 110249;110250 111523;111524;111525;111526 111523 4 LLDNWDTLASTLSK AQFEASALGKQLNLKLLDNWDTLASTLSKV KLLDNWDTLASTLSKVREQLGPVTQEFWDN K L L S K V 1 0 1 2 0 0 0 0 0 0 4 1 0 0 0 2 2 1 0 0 0 0 14 0 1575.8144 CON__P15497 CON__P15497 69 82 yes yes 2 1.1058E-06 106.49 By MS/MS By MS/MS 1 1 0.015462 0.014216 39.732 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.012984 0.010734 NaN 1 1 Median 0.018412 0.018827 NaN 1 1 Median NaN NaN NaN 0 0 Median 33076000 32382000 694850 0 0 0 0 0 0 0 0 0 1341000 1333500 7463.1 31735000 31048000 687390 0 0 0 + 20963 758 21864 110251;110252 111527;111528 111527 2 LLDPEDISVDHPDEK QNAFNLAEQHLGLTKLLDPEDISVDHPDEK LLDPEDISVDHPDEKSIITYVVTYYHYFSK K L L E K S 0 0 0 4 0 0 2 0 1 1 2 1 0 0 2 1 0 0 0 1 0 0 15 0 1720.8156 Q01082;A0A087WUZ3;F8W6C1 Q01082 250 264 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.5155E-19 138.45 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 3 2 1 1 1 0.87802 0.77557 14.752 9 Median 0.94354 0.90968 NaN 1 0 Median 0.87438 0.77333 2.4143 3 0 Median 0.82585 0.90757 32.213 2 1 Median 0.84006 0.75702 NaN 1 0 Median 0.87802 0.92316 NaN 1 0 Median 0.93198 0.77699 NaN 1 0 Median 157360000 84427000 72933000 16575000 8147000 8428200 38575000 19598000 18977000 92559000 51517000 41042000 5306300 2673600 2632600 3605000 1925000 1680000 738890 566680 172210 20964 2681 21865 110253;110254;110255;110256;110257;110258;110259;110260;110261 111529;111530;111531;111532;111533;111534;111535 111531 7 LLDPEDVDVPQPDEK DQAFSVAERDLGVTRLLDPEDVDVPQPDEK LLDPEDVDVPQPDEKSIITYVSSLYDAMPR R L L E K S 0 0 0 4 0 1 2 0 0 0 2 1 0 0 3 0 0 0 0 2 0 0 15 0 1707.8203 Q15149;H0YDN1;E9PMV1 Q15149 372 386 PLEC Plectin yes no 2 2.9019E-09 100.04 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.83499 0.83055 17.166 5 Median 0.83499 0.83795 NaN 1 0 Median 1.1327 0.98414 23.996 2 0 Median 0.75911 0.81582 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70532 0.74424 NaN 1 0 Median NaN NaN NaN 0 0 Median 39651000 20901000 18750000 27294000 14482000 12812000 5010700 2407000 2603700 5768000 3154900 2613100 0 0 0 1577900 856770 721170 0 0 0 20965 2933 21866 110262;110263;110264;110265;110266 111536;111537;111538;111539;111540;111541 111536 6 LLDPEDVNVDQPDEK QNAFNLAEKELGLTKLLDPEDVNVDQPDEK LLDPEDVNVDQPDEKSIITYVATYYHYFSK K L L E K S 0 0 1 4 0 1 2 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 15 0 1724.8105 O15020;A4QPE4 O15020 253 267 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 2 9.8069E-08 128.85 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.0538 0.95777 34.088 5 Median 1.6412 1.5774 NaN 1 0 Median 1.0371 0.90743 30.589 2 0 Median 0.61667 0.6804 NaN 1 0 Median 1.0538 0.95777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21027000 10651000 10376000 4631200 1185100 3446100 3202400 1562300 1640100 12434000 7540900 4893400 759230 362630 396600 0 0 0 0 0 0 20966 1512 21867 110267;110268;110269;110270;110271 111542;111543;111544 111544 3 LLDPSTPVHILR TWKPLNPNSWLYHAKLLDPSTPVHILREIG HAKLLDPSTPVHILREIGLRLSHCSHCVPK K L L L R E 0 1 0 1 0 0 0 0 1 1 3 0 0 0 2 1 1 0 0 1 0 0 12 0 1359.7874 Q9NXF7 Q9NXF7 80 91 DCAF16 DDB1- and CUL4-associated factor 16 yes yes 3 0.02135 35.523 By MS/MS 2 0.39418 0.38347 47.087 2 Median 0.39418 0.38347 47.087 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7695200 5399900 2295200 7695200 5399900 2295200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20967 4164 21868 110272;110273 111545;111546 111545 2 LLDQIVEK CMLTGTPESVQSAKRLLDQIVEKGRPAPGF SVQSAKRLLDQIVEKGRPAPGFHHGDGPGN R L L E K G 0 0 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 956.55425 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 163 170 FUBP1 Far upstream element-binding protein 1 no no 2 0.0026731 130.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 6 2 3 1.2845 1.1267 14.935 19 Median 1.238 1.1224 NaN 1 0 Median 1.3954 1.2066 9.6888 2 0 Median 1.2345 1.1841 16.858 5 1 Median 1.2902 1.1013 15.673 6 0 Median 1.2344 1.2222 5.8921 2 0 Median 1.3883 1.1414 15.31 3 0 Plateau 306420000 131230000 175190000 11981000 5577700 6403800 7792300 3194300 4598000 218180000 93016000 125160000 48008000 20814000 27194000 10625000 4588500 6036600 9831000 4040900 5790000 20968 3599;723 21869 110274;110275;110276;110277;110278;110279;110280;110281;110282;110283;110284;110285;110286;110287;110288;110289;110290;110291;110292 111547;111548;111549;111550;111551;111552;111553;111554;111555;111556;111557;111558;111559;111560;111561 111560 15 LLDRNQDETEDTELQGMNEYLSSFK EDSSVIHYDDKAIERLLDRNQDETEDTELQ DTELQGMNEYLSSFKVAQYVVREEEMGEEE R L L F K V 0 1 2 3 0 2 4 1 0 0 4 1 1 1 0 2 2 0 1 0 0 0 25 1 2974.3502 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9;A0A2R8YE38 Q14839 1257 1281 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 1.9733E-17 70.569 By matching By MS/MS 1 3 0.95756 1.1477 18.265 4 Median 1.3775 1.4107 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95543 1.1457 13.882 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12972000 6095000 6877300 722210 316380 405830 0 0 0 12250000 5778600 6471500 0 0 0 0 0 0 0 0 0 20969 246 21870;21871 110293;110294;110295;110296 111562;111563;111564;111565;111566;111567 111562 104 6 LLDSDQELYR FDIGSFDEEDTKGIKLLDSDQELYRNFPLT TKGIKLLDSDQELYRNFPLTISERWQQEVA K L L Y R N 0 1 0 2 0 1 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1250.6143 P25098 P25098 498 507 ADRBK1 Beta-adrenergic receptor kinase 1 yes yes 2 0.048836 28.399 By MS/MS 1 0.84243 0.81335 NaN 1 Median 0.84243 0.81335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3893100 1988700 1904400 3893100 1988700 1904400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20970 2128 21872 110297 111568 111568 1 LLDSEIK EVLKMSTEEIIQRTRLLDSEIKIMKSEVLR EEIIQRTRLLDSEIKIMKSEVLRVTHELQA R L L I K I 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 7 0 816.45928 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PN50;E9PLG2 R4GNH3 31 37 PSMC3 26S protease regulatory subunit 6A yes no 2 0.023925 56.122 By matching By MS/MS 1 1 1.5408 1.3816 23.645 2 Median 1.7232 1.633 NaN 1 0 Median 1.3778 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12784000 5336500 7447300 4241700 1700400 2541200 8542100 3636000 4906100 0 0 0 0 0 0 0 0 0 0 0 0 20971 2050 21873 110298;110299 111569 111569 1 LLDSITVPVAR MQPAQHGEIIKHMAKLLDSITVPVARASIL HMAKLLDSITVPVARASILWLIGENCERVP K L L A R A 1 1 0 1 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 2 0 0 11 0 1182.6972 O00203 O00203 486 496 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.000182 110.87 By MS/MS By matching By matching By matching By matching 2 1 2 1 1 0.90798 0.92085 40.164 7 Median 0.83991 0.8111 4.5501 2 0 Median 0.90798 0.76424 NaN 1 0 Median 1.4864 1.5673 59.607 2 0 Median 1.4993 1.2773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86305 0.92085 NaN 1 0 Median 24538000 11954000 12584000 13226000 7048200 6178100 5993000 2910200 3082800 3424900 1180300 2244600 1674500 683520 990990 0 0 0 219670 131760 87911 20972 1447 21874 110300;110301;110302;110303;110304;110305;110306 111570;111571 111570 2 LLDSSTVTHLFK KDCAVIVTQKKVPDKLLDSSTVTHLFKITE PDKLLDSSTVTHLFKITENIGCVMTGMTAD K L L F K I 0 0 0 1 0 0 0 0 1 0 3 1 0 1 0 2 2 0 0 1 0 0 12 0 1359.7398 G3V5Z7;P60900;G3V295;G3V3I1;G3V3U4 G3V5Z7 60 71 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2;3 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1.2058 1.084 8.3467 9 Median 1.2058 1.1122 8.4509 3 0 Median 1.2334 1.0452 0.48256 2 0 Median 1.1653 1.1081 3.1196 2 0 Median 1.251 1.0094 13.997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149710000 67699000 82008000 137710000 62426000 75282000 4396300 1923500 2472800 7306400 3214500 4091900 296750 134830 161920 0 0 0 0 0 0 20973 1122 21875 110307;110308;110309;110310;110311;110312;110313;110314;110315 111572;111573;111574;111575;111576;111577;111578;111579;111580;111581 111580 10 LLDSVEQDFHLEIAK CSIKERMLYSSCKSRLLDSVEQDFHLEIAK LLDSVEQDFHLEIAKKIEIGDGAELTAEFL R L L A K K 1 0 0 2 0 1 2 0 1 1 3 1 0 1 0 1 0 0 0 1 0 0 15 0 1755.9043 Q6IBS0;H0Y858;H7C5I2 Q6IBS0 279 293 TWF2 Twinfilin-2 yes no 2 1.4602E-07 137.16 By MS/MS 1 1.2139 1.046 NaN 1 Median NaN NaN NaN 0 0 Median 1.2139 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2902500 1380400 1522000 0 0 0 2902500 1380400 1522000 0 0 0 0 0 0 0 0 0 0 0 0 20974 3138 21876 110316 111582;111583 111582 2 LLDSVPPTAISHFK SATEIIKASSKDAIRLLDSVPPTAISHFKQ RLLDSVPPTAISHFKQSAEKLIEEKGAVEA R L L F K Q 1 0 0 1 0 0 0 0 1 1 2 1 0 1 2 2 1 0 0 1 0 0 14 0 1523.8348 Q9NR30 Q9NR30 582 595 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 7.072E-06 124.42 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 2 6 0.98579 1.0146 23.241 15 Median 1.1693 1.1523 56.722 2 0 Median 0.92459 0.80773 NaN 1 0 Median 1.0089 1.0871 20.171 4 1 Median 0.91946 0.79831 13.573 2 0 Median 0.99015 1.0241 12.568 6 0 Median NaN NaN NaN 0 0 Median 133000000 64016000 68983000 10970000 4904400 6066000 6600300 3747600 2852800 81628000 38513000 43115000 3838600 1948900 1889700 29962000 14902000 15060000 0 0 0 20975 4076 21877 110317;110318;110319;110320;110321;110322;110323;110324;110325;110326;110327;110328;110329;110330;110331;110332 111584;111585;111586;111587;111588;111589;111590;111591;111592;111593;111594;111595;111596;111597;111598;111599;111600 111588 17 LLDSWFTSTQEK LAVQVHAWQLYYSKKLLDSWFTSTQEKKHK SKKLLDSWFTSTQEKKHK____________ K L L E K K 0 0 0 1 0 1 1 0 0 0 2 1 0 1 0 2 2 1 0 0 0 0 12 0 1453.7089 Q8N5M9 Q8N5M9 169 180 JAGN1 Protein jagunal homolog 1 yes yes 2 0.001303 54.608 By MS/MS By MS/MS 3 3 1.0584 0.98162 21.715 6 Median 0.85945 0.80911 15.42 3 0 Median 1.2793 1.1218 2.7861 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12970000 7004500 5965000 10366000 5844200 4522200 2603100 1160300 1442800 0 0 0 0 0 0 0 0 0 0 0 0 20976 3383 21878 110333;110334;110335;110336;110337;110338 111601;111602;111603;111604 111602 4 LLDTIGISQPQWR PEAIDSAENRFKFSRLLDTIGISQPQWREL SRLLDTIGISQPQWRELSDLESARQFCQTV R L L W R E 0 1 0 1 0 2 0 1 0 2 2 0 0 0 1 1 1 1 0 0 0 0 13 0 1525.8253 F8VPD4;P27708 F8VPD4 991 1003 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 2.2088E-22 161.76 By MS/MS By MS/MS By matching 1 2 1 1.0479 0.97846 15.891 4 Median 1.1521 1.1212 NaN 1 1 Median 0.99663 0.84413 8.4082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0352 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median 45464000 23146000 22319000 19426000 9429200 9997000 25203000 13342000 11861000 0 0 0 0 0 0 835440 374330 461120 0 0 0 20977 1057 21879 110339;110340;110341;110342 111605;111606;111607 111605 3 LLDTNPEINQSDSQDSR LFYVTAFDRDRAMQRLLDTNPEINQSDSQD DTNPEINQSDSQDSRVAPRLDRKKRTVNRE R L L S R V 0 1 2 3 0 2 1 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 17 0 1930.8868 Q14669 Q14669 1565 1581 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 2.7606E-31 194.7 By MS/MS By MS/MS By matching 1 1 1 0.9257 0.93971 8.6146 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86213 0.93971 NaN 1 0 Median 0.9396 0.8259 NaN 1 0 Median 0.9257 0.97246 NaN 1 0 Median NaN NaN NaN 0 0 Median 31098000 14346000 16752000 0 0 0 0 0 0 24808000 11364000 13444000 3068900 1533900 1535000 3221100 1448000 1773100 0 0 0 20978 2886 21880 110343;110344;110345 111608;111609;111610;111611 111609 4 LLDTSTYK LKEQYAQEHGLNFQRLLDTSTYKEAFRKDM HGLNFQRLLDTSTYKEAFRKDMIRWGEEKR R L L Y K E 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 2 0 1 0 0 0 8 0 939.49131 Q15126 Q15126 62 69 PMVK Phosphomevalonate kinase yes yes 2 0.014843 50.607 By MS/MS By MS/MS 1 1 1.467 1.317 18.3 2 Median 1.2422 1.1571 NaN 1 0 Median 1.7325 1.4989 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6317100 2652200 3664900 4518000 2027300 2490700 1799000 624830 1174200 0 0 0 0 0 0 0 0 0 0 0 0 20979 2931 21881 110346;110347 111612;111613 111612 2 LLDTVDDMLANDIAR LQTQDFSKFQALKPKLLDTVDDMLANDIAR LLDTVDDMLANDIARLMVMVRQEESLMPSQ K L L A R L 2 1 1 4 0 0 0 0 0 1 3 0 1 0 0 0 1 0 0 1 0 0 15 0 1673.8294 A0A024R571;Q9H4M9;C9J2Z4 A0A024R571 392 406 EHD1 EH domain-containing protein 1 yes no 2 2.0656E-56 195.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 4 1.1408 1.0414 34.395 10 Median 1.1415 1.0798 NaN 1 0 Median 1.117 0.95953 0.99251 2 0 Median 1.1907 1.2188 2.0338 2 1 Median 1.8949 1.6276 NaN 1 0 Median 2.5741 2.5815 NaN 1 1 Median 1.169 1.0044 10.93 3 0 Plateau 72865000 30535000 42330000 18580000 8352900 10227000 17492000 8001000 9491400 21440000 8308300 13131000 2376500 819520 1557000 4884300 1258600 3625700 8092800 3794900 4297900 20980 5 21882;21883 110348;110349;110350;110351;110352;110353;110354;110355;110356;110357;110358 111614;111615;111616;111617;111618;111619;111620;111621;111622;111623;111624;111625 111624 3 12 LLDVDADGR L L G R 1 1 0 3 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 972.48762 REV__Q8TBB7 yes yes 2 0.0019502 75.854 By MS/MS By MS/MS 2 2 0.97805 0.91536 4.7752 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87245 0.87828 0 2 0 Median 1.0964 0.95401 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10835000 5612900 5222500 0 0 0 0 0 0 6069000 3263200 2805800 4766400 2349700 2416700 0 0 0 0 0 0 + 20981 4552 21884 110359;110360;110361;110362 111626;111627 111626 2 LLDVDNR SYMLPPLFLEPGDLRLLDVDNRVVLPIEAP FLEPGDLRLLDVDNRVVLPIEAPIRMMITS R L L N R V 0 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 843.44503 P00403 P00403 135 141 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 0.0017105 110.61 By MS/MS By MS/MS By MS/MS 2 1 1 0.54288 0.51988 21.578 4 Median 0.53072 0.50355 4.975 2 0 Median 0.94016 0.77907 NaN 1 0 Median 0.53926 0.51819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57807000 34705000 23102000 33349000 20825000 12525000 15196000 7918100 7278100 9261300 5962100 3299300 0 0 0 0 0 0 0 0 0 20982 1819 21885 110363;110364;110365;110366 111628;111629;111630;111631;111632 111628 5 LLDVDNRVVLPIEAPIR SYMLPPLFLEPGDLRLLDVDNRVVLPIEAP DVDNRVVLPIEAPIRMMITSQDVLHSWAVP R L L I R M 1 2 1 2 0 0 1 0 0 2 3 0 0 0 2 0 0 0 0 3 0 0 17 1 1931.1204 P00403 P00403 135 151 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 3 0.00030017 52.887 By MS/MS 1 0.30106 0.33834 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30106 0.33834 NaN 1 1 Median NaN NaN NaN 0 0 Median 3014800 2438100 576740 0 0 0 0 0 0 0 0 0 0 0 0 3014800 2438100 576740 0 0 0 20983 1819 21886 110367 111633 111633 1 LLDVIHTENK EISLLKELNHPNIVKLLDVIHTENKLYLVF PNIVKLLDVIHTENKLYLVFEFLHQDLKKF K L L N K L 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1180.6452 G3V5T9;P24941 G3V5T9 66 75 CDK2 Cyclin-dependent kinase 2 yes no 2 0.00038082 113.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1253 0.99741 14.828 4 Median 1.0055 0.93949 NaN 1 0 Median 1.3417 1.1257 NaN 1 0 Median 0.83807 0.80414 NaN 1 1 Median 1.2594 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23953000 10865000 13088000 7835800 3673000 4162800 5173700 2211300 2962400 5874500 2863600 3010900 5069000 2117400 2951600 0 0 0 0 0 0 20984 1120 21887 110368;110369;110370;110371;110372 111634;111635;111636;111637;111638;111639;111640 111634 7 LLDVMELAEK IWENIHTLVEEREAKLLDVMELAEKFWCDH EREAKLLDVMELAEKFWCDHMSLIVTIKDT K L L E K F 1 0 0 1 0 0 2 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 10 0 1159.6159 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 4067 4076 DST Dystonin yes no 2 0.037233 31.934 By MS/MS By matching By matching 1 1 2 1.2255 1.2349 26.945 4 Median NaN NaN NaN 0 0 Median 1.1746 1.0363 NaN 1 0 Median 1.0547 1.1621 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5579 1.59 27.155 2 0 Median NaN NaN NaN 0 0 Median 3159900 1249100 1910800 0 0 0 756540 284730 471810 1188300 559120 629220 0 0 0 1215000 405230 809740 0 0 0 20985 934 21888 110373;110374;110375;110376 111641 111641 1 LLDVNNQR LERTFVGAGLRGCIRLLDVNNQRLELGIGP GLRGCIRLLDVNNQRLELGIGPGAATRGSG R L L Q R L 0 1 2 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 970.51959 A0A087X208;A0A494C0G5;A0A494C1I6;O00468 A0A087X208 1384 1391 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment yes no 2 0.0035088 91.906 By MS/MS 1 2.3757 1.9802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3757 1.9802 NaN 1 0 Median 1554600 454590 1100000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1554600 454590 1100000 20986 126 21889 110377 111642 111642 1 LLDVTGGLGTDELR LPLAVASTADLIRCKLLDVTGGLGTDELRL KLLDVTGGLGTDELRLLYGMALVRFVNLIS K L L L R L 0 1 0 2 0 0 1 3 0 0 4 0 0 0 0 0 2 0 0 1 0 0 14 0 1457.7726 Q9Y4W2 Q9Y4W2 99 112 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 3.7635E-07 107.83 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.0859 1.0121 11.941 6 Median NaN NaN NaN 0 0 Median 1.1435 0.99212 2.5657 2 2 Median 1.0499 1.1152 NaN 1 1 Median 1.2039 1.0372 NaN 1 0 Median 0.86727 0.89208 18.116 2 2 Median NaN NaN NaN 0 0 Median 32489000 15661000 16827000 0 0 0 4994000 2312500 2681500 9833200 4407400 5425800 1783800 793640 990160 15878000 8147900 7729800 0 0 0 20987 4448 21890 110378;110379;110380;110381;110382;110383 111643;111644;111645;111646;111647;111648 111643 6 LLDVVHPAAK RGKATISNDGATILKLLDVVHPAAKTLVDI ATILKLLDVVHPAAKTLVDIAKSQDAEVGD K L L A K T 2 0 0 1 0 0 0 0 1 0 2 1 0 0 1 0 0 0 0 2 0 0 10 0 1061.6233 Q99832;F8WAM2 Q99832 68 77 CCT7 T-complex protein 1 subunit eta yes no 2 0.00047826 91.069 By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 0.9968 0.88486 13.422 8 Median 1.0267 0.983 9.7153 2 0 Median 0.99051 0.83328 6.2137 4 0 Median 1.1168 1.1494 NaN 1 0 Median 0.93644 0.80368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94647000 47872000 46774000 36028000 18605000 17423000 53100000 26505000 26596000 2520300 1318500 1201800 2997800 1443900 1553900 0 0 0 0 0 0 20988 3771 21891 110384;110385;110386;110387;110388;110389;110390;110391 111649;111650;111651;111652;111653;111654;111655 111652 7 LLDYSLHK SDLRLIEVTETICKRLLDYSLHKERTGSNR TETICKRLLDYSLHKERTGSNRFAKGMSET R L L H K E 0 0 0 1 0 0 0 0 1 0 3 1 0 0 0 1 0 0 1 0 0 0 8 0 987.53893 Q9BT09 Q9BT09 107 114 CNPY3 Protein canopy homolog 3 yes yes 2 0.0078694 65.252 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.2086 1.1553 18.871 5 Median 0.98818 0.92729 NaN 1 0 Median 1.4353 1.2657 1.018 2 0 Median 1.2086 1.1553 NaN 1 0 Median 0.99421 0.83814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16069000 8719500 7349700 6847200 4338000 2509200 3674800 1759300 1915400 2808800 1295400 1513400 2738500 1326800 1411700 0 0 0 0 0 0 20989 3820 21892 110392;110393;110394;110395;110396 111656;111657;111658;111659;111660 111656 5 LLDYTEKPLYENLR KNKPGEIAKYMETVKLLDYTEKPLYENLRD KLLDYTEKPLYENLRDILLQGLKAIGSKDD K L L L R D 0 1 1 1 0 0 2 0 0 0 4 1 0 0 1 0 1 0 2 0 0 0 14 1 1765.9251 Q99986;H0YJ50;H0YJJ9 Q99986 308 321 VRK1 Serine/threonine-protein kinase VRK1 yes no 2;3 1.549E-25 160.18 By MS/MS By MS/MS By matching 3 4 3 0.8585 0.81083 19.889 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76501 0.78092 21.552 3 1 Median 0.80387 0.7527 25.931 4 1 Median NaN NaN NaN 0 0 Median 0.923 0.84188 12.49 3 0 Median 374150000 205550000 168590000 0 0 0 0 0 0 256370000 145240000 111130000 116430000 59610000 56815000 0 0 0 1347400 696960 650410 20990 3775 21893 110397;110398;110399;110400;110401;110402;110403;110404;110405;110406 111661;111662;111663;111664;111665;111666;111667;111668;111669 111664 9 LLDYVATVEDEAAAAK LDIPMISWVVMLVSRLLDYVATVEDEAAAA LDYVATVEDEAAAAKKPLNGNQWSFINNNL R L L A K K 5 0 0 2 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 2 0 0 16 0 1677.8461 A0A3B3IUB9;Q9NR09 Q9NR09 2178 2193 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.00012379 66.262 By MS/MS By MS/MS 1 1 0.87719 0.818 23.957 2 Median 0.97277 0.969 NaN 1 0 Median 0.791 0.69053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8587600 4381800 4205800 5867000 2872900 2994100 2720500 1508800 1211700 0 0 0 0 0 0 0 0 0 0 0 0 20991 4073;445 21894 110407;110408 111670;111671;111672;111673 111671 4 LLDYVPIGPR YKSQLSCVVVDDIERLLDYVPIGPRFSNLV DDIERLLDYVPIGPRFSNLVLQALLVLLKK R L L P R F 0 1 0 1 0 0 0 1 0 1 2 0 0 0 2 0 0 0 1 1 0 0 10 0 1141.6495 I3L0N3;P46459;I3L2G1;K7EQD6 I3L0N3 603 612 NSF Vesicle-fusing ATPase yes no 2 0.00035707 83.265 By MS/MS By matching By matching 2 4 2 0.87238 0.79515 21.07 8 Median 0.72176 0.6957 19.417 2 0 Median 0.87422 0.7462 25.097 4 0 Median NaN NaN NaN 0 0 Median 1.0362 0.89269 14.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25048000 12666000 12382000 17288000 8988600 8299600 7105100 3389000 3716000 0 0 0 655090 288430 366660 0 0 0 0 0 0 20992 1272 21895 110409;110410;110411;110412;110413;110414;110415;110416 111674;111675 111675 2 LLEAAAQSTK DALDRSMVEEGTGLRLLEAAAQSTKGYYSP GTGLRLLEAAAQSTKGYYSPYSVSGSGSTA R L L T K G 3 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1030.5659 Q15149;H0YDN1 Q15149 4600 4609 PLEC Plectin yes no 2 0.0013144 75.378 By matching By MS/MS By matching By MS/MS 1 2 1 2 1.2966 1.1898 15.976 6 Median 1.133 1.1212 NaN 1 0 Median 1.2619 1.0991 19.605 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3295 1.4043 NaN 1 0 Median 1.4661 1.2215 21.027 2 1 Median 11882000 5724900 6157200 1570400 701110 869310 4717600 2146400 2571200 0 0 0 0 0 0 2514900 1413300 1101600 3079200 1464100 1615100 20993 2933 21896 110417;110418;110419;110420;110421;110422 111676;111677;111678;111679 111679 4 LLEAASVSSK DAINRSMVEDITGLRLLEAASVSSKGLPSP ITGLRLLEAASVSSKGLPSPYNMSSAPGSR R L L S K G 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 10 0 1003.555 P15924 P15924 2802 2811 DSP Desmoplakin yes yes 2 0.0007841 71.349 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 1 4 1.1373 0.99331 26.355 11 Median 0.89989 0.89187 NaN 1 0 Median 1.1373 0.99331 14.185 3 0 Median 0.62987 0.69679 3.6486 2 0 Median NaN NaN NaN 0 0 Median 0.8708 0.83111 NaN 1 0 Median 1.4857 1.233 16.676 4 1 Median 29259000 13288000 15972000 1394700 838220 556470 7844100 3608500 4235500 3954300 1921700 2032600 0 0 0 3133300 1675700 1457600 12933000 5243800 7689300 20994 2021 21897 110423;110424;110425;110426;110427;110428;110429;110430;110431;110432;110433 111680;111681;111682;111683;111684;111685;111686;111687 111685 6 LLEAETQR RRYRQREVTLGQVAKLLEAETQRQADIMLP TLGQVAKLLEAETQRQADIMLPALRSRVTV K L L Q R Q 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 958.50836 P58107;A0A075B730 P58107 867 874 EPPK1 Epiplakin yes no 2 0.0027118 127.12 By MS/MS By MS/MS 2 3 1.1961 1.1154 15.276 5 Median 1.0795 1.0779 14.235 2 0 Median 1.2417 1.1154 17.492 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9768500 4030100 5738400 1658300 760800 897460 8110200 3269300 4840900 0 0 0 0 0 0 0 0 0 0 0 0 20995 2520 21898 110434;110435;110436;110437;110438 111688;111689;111690;111691 111690 4 LLEAFHNQGPVIK KKHQRTLMPEKLSHKLLEAFHNQGPVIKRK HKLLEAFHNQGPVIKRKHDLHKMAEANRAL K L L I K R 1 0 1 0 0 1 1 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 13 0 1464.8089 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1 J3QLS3 238 250 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 7.7481E-05 131.28 By MS/MS By matching 2 1 1.1865 1.0992 28.56 3 Median 1.01 0.93609 22.722 2 0 Median 1.65 1.4091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47240000 24980000 22261000 46047000 24558000 21489000 1193200 421340 771860 0 0 0 0 0 0 0 0 0 0 0 0 20996 1341 21899 110439;110440;110441 111692;111693;111694;111695 111693 4 LLEAFHNQGPVIKR KKHQRTLMPEKLSHKLLEAFHNQGPVIKRK KLLEAFHNQGPVIKRKHDLHKMAEANRALA K L L K R K 1 1 1 0 0 1 1 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 14 1 1620.91 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1 J3QLS3 238 251 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3;4 6.142E-05 75.479 By MS/MS By MS/MS 2 2 0.86385 0.85472 25.289 4 Median 0.72295 0.7562 3.5936 2 0 Median 1.1771 1.1015 22.152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20598000 8770700 11827000 17537000 7469700 10068000 3060800 1301000 1759700 0 0 0 0 0 0 0 0 0 0 0 0 20997 1341 21900 110442;110443;110444;110445 111696;111697;111698 111698 3 LLEAHEEQNVDSYTESVK FPAFSDSRECKLMKKLLEAHEEQNVDSYTE AHEEQNVDSYTESVKEYDSISRLDQWLTTM K L L V K E 1 0 1 1 0 1 4 0 1 0 2 1 0 0 0 2 1 0 1 2 0 0 18 0 2089.9804 M0R0Y2;P54920;M0R213 M0R0Y2 208 225 NAPA Alpha-soluble NSF attachment protein yes no 3 4.0199E-08 86.455 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2416 1.108 9.474 4 Median 1.2517 1.1615 NaN 1 0 Median 1.5201 1.2775 NaN 1 0 Median 1.0984 1.0569 NaN 1 0 Median 1.2315 1.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33378000 16245000 17133000 9757700 5171800 4585900 11066000 5322300 5743400 10792000 5021500 5770300 1762500 729610 1032900 0 0 0 0 0 0 20998 1430 21901 110446;110447;110448;110449 111699;111700;111701;111702;111703;111704 111701 6 LLEAISSLDGK SEDEGDNDGERKHQKLLEAISSLDGKNRRK KHQKLLEAISSLDGKNRRKLAERSEASLKV K L L G K N 1 0 0 1 0 0 1 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.634 Q9BVJ6 Q9BVJ6 46 56 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.0052448 46.462 By MS/MS By matching 1 2 2.0924 2.1493 48.52 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0991 1.1806 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4722 2.5752 25.564 2 0 Median NaN NaN NaN 0 0 Median 11035000 3555200 7480200 0 0 0 0 0 0 2323300 1095200 1228200 0 0 0 8712000 2460100 6252000 0 0 0 20999 3855 21902 110450;110451;110452 111705;111706 111705 2 LLEAQIATGGIIDPK QAMNKELIEKGHGIRLLEAQIATGGIIDPK LLEAQIATGGIIDPKESHRLPVDIAYKRGY R L L P K E 2 0 0 1 0 1 1 2 0 3 2 1 0 0 1 0 1 0 0 0 0 0 15 0 1537.8716 P15924 P15924 2367 2381 DSP Desmoplakin yes yes 2 0.025808 39.266 By MS/MS 2 0.69181 0.73056 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69181 0.73056 NaN 1 1 Median NaN NaN NaN 0 0 Median 3630800 2654700 976120 0 0 0 0 0 0 0 0 0 0 0 0 3630800 2654700 976120 0 0 0 21000 2021 21903 110453;110454 111707;111708 111707 2 LLEAQIATGGIIDPVHSHR QAMQKGLVLRQHGIRLLEAQIATGGIIDPV QIATGGIIDPVHSHRVPVDVAYQRGYFSEE R L L H R V 2 1 0 1 0 1 1 2 2 3 2 0 0 0 1 1 1 0 0 1 0 0 19 0 2026.096 P58107;A0A075B730;Q15149;H0YDN1 Q15149 3601 3619 EPPK1;PLEC Epiplakin;Plectin no no 2;3;4 2.8136E-31 141.46 By MS/MS By MS/MS By matching By matching By matching 4 4 2 1 2 1.2471 1.0549 33.435 13 Median 0.95761 0.93097 10.864 4 1 Median 1.2505 1.0289 17.012 4 0 Median 1.295 1.434 86.371 2 0 Median NaN NaN NaN 0 0 Median 1.5022 1.5768 NaN 1 0 Median 1.6347 1.3633 10.411 2 0 Median 184630000 96892000 87736000 140200000 77127000 63073000 37268000 16684000 20585000 3920700 1592700 2328000 0 0 0 2444100 1157700 1286400 793810 330130 463680 21001 2933;2520 21904 110455;110456;110457;110458;110459;110460;110461;110462;110463;110464;110465;110466;110467 111709;111710;111711;111712;111713;111714;111715;111716;111717 111712 8 LLEAQIATGGVIDPVHSHR QAMQKGLIVREHGIRLLEAQIATGGVIDPV QIATGGVIDPVHSHRVPVDVAYRRGYFDEE R L L H R V 2 1 0 1 0 1 1 2 2 2 2 0 0 0 1 1 1 0 0 2 0 0 19 0 2012.0803 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2942 2960 EPPK1;PLEC Epiplakin;Plectin no no 2;3;4 9.9394E-104 226.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 3 1 6 4 1.115 1.0458 18.44 26 Median 1.0884 1.0345 4.0412 6 0 Median 1.1823 0.98102 15.125 6 0 Median 0.88001 0.92632 6.1268 3 2 Median 1.2555 1.0912 NaN 1 0 Median 1.3584 1.3885 14.619 6 2 Median 1.0996 0.88803 21.415 4 0 Median 1677800000 771090000 906670000 1219800000 564350000 655500000 339360000 151670000 187690000 41010000 20850000 20160000 618750 314780 303970 61216000 26810000 34405000 15709000 7092800 8616700 21002 2933;2520 21905 110468;110469;110470;110471;110472;110473;110474;110475;110476;110477;110478;110479;110480;110481;110482;110483;110484;110485;110486;110487;110488;110489;110490;110491;110492;110493;110494 111718;111719;111720;111721;111722;111723;111724;111725;111726;111727;111728;111729;111730;111731;111732;111733;111734;111735;111736;111737;111738;111739;111740;111741;111742;111743;111744;111745;111746;111747;111748;111749;111750;111751;111752;111753;111754;111755;111756;111757 111726 38 LLEAQIATGGVIDPVHSHRVPVDVAYR QAMQKGLIVREHGIRLLEAQIATGGVIDPV DPVHSHRVPVDVAYRRGYFDEEMNRVLADP R L L Y R R 3 2 0 2 0 1 1 2 2 2 2 0 0 0 2 1 1 0 1 5 0 0 27 1 2911.5668 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2942 2968 EPPK1;PLEC Epiplakin;Plectin no no 4 1.5649E-19 63.122 By MS/MS 1 0.66019 0.71743 NaN 1 Median 0.66019 0.71743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6097500 3875100 2222400 6097500 3875100 2222400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21003 2933;2520 21906 110495 111758 111758 1 LLEAQSHFR RWSQLLANSAARKKKLLEAQSHFRKVEDLF AARKKKLLEAQSHFRKVEDLFLTFAKKASA K L L F R K 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1099.5774 A0A0D9SF54;A0A1B0GUH3;Q13813 Q13813 2079 2087 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 7.5354E-07 160.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1.0445 1.0852 17.854 7 Median 1.3557 1.3071 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.93023 1.0138 NaN 1 0 Median 1.229 1.0748 26.99 2 0 Median 1.0445 1.097 NaN 1 0 Median 1.1458 0.93925 20.429 2 0 Median 41282000 19483000 21800000 4188100 1659400 2528700 0 0 0 14307000 7504600 6802500 4306900 1910400 2396600 2803300 1230400 1572900 15677000 7177900 8499100 21004 264;2838 21907 110496;110497;110498;110499;110500;110501;110502 111759;111760;111761;111762;111763;111764;111765;111766;111767;111768;111769 111761 11 LLEAQSHFRK RWSQLLANSAARKKKLLEAQSHFRKVEDLF ARKKKLLEAQSHFRKVEDLFLTFAKKASAF K L L R K V 1 1 0 0 0 1 1 0 1 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1227.6724 A0A0D9SF54;A0A1B0GUH3;Q13813 Q13813 2079 2088 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.064744 16.632 By MS/MS By MS/MS 1 1 1.223 1.2545 24.77 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2618 1.4947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1854 1.053 NaN 1 0 Median 1012100 498650 513430 0 0 0 0 0 0 453490 246040 207450 0 0 0 0 0 0 558590 252610 305980 21005 264;2838 21908 110503;110504 111770;111771 111771 1 LLEAQVASGFLVDPLNNQR QAVRDGLLPTGLGQRLLEAQVASGFLVDPL QVASGFLVDPLNNQRLSVEDAVKVGLVGRE R L L Q R L 2 1 2 1 0 2 1 1 0 0 4 0 0 1 1 1 0 0 0 2 0 0 19 0 2083.1062 P58107;A0A075B730 P58107 1279 1297 EPPK1 Epiplakin yes no 2;3 0.041788 20.953 By MS/MS By matching 2 2 0.87237 0.81324 16.612 4 Median 0.94538 0.94407 12.09 2 0 Median 0.84349 0.73201 5.876 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2890200 1426600 1463600 1979300 952830 1026500 910870 473740 437130 0 0 0 0 0 0 0 0 0 0 0 0 21006 2520 21909 110505;110506;110507;110508 111772;111773 111772 2 LLEATELK EVAARMNEVISLWKKLLEATELKGIKLREA VISLWKKLLEATELKGIKLREANQQQQFNR K L L L K G 1 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 915.5277 A0A0D9SF54;Q13813 Q13813 663 670 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0032257 100.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 1 2 1.1139 1.0199 16.682 11 Median 1.0543 1.0142 NaN 1 0 Median 1.2288 1.0967 15.994 3 0 Median 0.8035 0.8767 25.902 2 1 Median 1.1932 1.1199 13.227 2 0 Median 0.95368 0.99822 NaN 1 0 Median 1.0776 0.9094 6.7867 2 0 Median 113950000 54962000 58990000 4253700 2037100 2216600 34239000 14999000 19240000 45575000 23741000 21834000 12128000 5594200 6533300 10175000 4923600 5251100 7581900 3667600 3914300 21007 264;2838 21910 110509;110510;110511;110512;110513;110514;110515;110516;110517;110518;110519 111774;111775;111776;111777;111778;111779;111780;111781;111782;111783;111784;111785;111786;111787;111788;111789;111790 111779 17 LLECYFTR KFVGRIVAKAVYDNRLLECYFTRSFYKHIL KAVYDNRLLECYFTRSFYKHILGKSVRYTD R L L T R S 0 1 0 0 1 0 1 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 8 0 1100.5325 Q7Z6Z7;H0Y659 Q7Z6Z7 4123 4130 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.039398 63.48 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21008 3253 21911 110520 111791 111791 1 LLEDFGDGGAFPEIHVAQYPLDMGR REPPPYGYRKGWIPRLLEDFGDGGAFPEIH FPEIHVAQYPLDMGRKKKMSNALAIQVDSE R L L G R K 2 1 0 3 0 1 2 4 1 1 3 0 1 2 2 0 0 0 1 1 0 0 25 0 2746.3061 Q13573;G3V3A4;G3V5R3 Q13573 54 78 SNW1 SNW domain-containing protein 1 yes no 3 4.0239E-05 31.176 By MS/MS By MS/MS By MS/MS 1 1 2 0.75405 0.78072 25.978 4 Median 0.73732 0.74668 NaN 1 0 Median 1.4378 1.2476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73276 0.7567 10.724 2 0 Median NaN NaN NaN 0 0 Median 8054000 4333000 3721000 1753300 918010 835260 995550 513200 482360 0 0 0 0 0 0 5305200 2901800 2403400 0 0 0 21009 2826 21912 110521;110522;110523;110524 111792;111793;111794;111795;111796 111794 5 LLEDGEDFNLGDALDSSNSMQTIQK NIKVKLEAEIATYRRLLEDGEDFNLGDALD GDALDSSNSMQTIQKTTTRRIVDGKVVSET R L L Q K T 1 0 2 4 0 2 2 2 0 1 4 1 1 1 0 3 1 0 0 0 0 0 25 0 2739.2545 P05783 P05783 383 407 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 1.1022E-104 243.04 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 5 6 4 3 4 1.1491 1.0692 16.822 23 Median 1.4647 1.4448 NaN 1 0 Median 1.4142 1.2102 12.345 5 0 Median 1.1153 1.0687 9.4098 6 0 Median 1.1491 1.0307 8.7732 4 0 Median 1.3016 1.2444 12.747 3 0 Median 1.1098 0.92481 22.585 4 0 Median 316800000 136260000 180540000 500790 223960 276830 14283000 5850400 8432300 220840000 96899000 123940000 37576000 16206000 21370000 37792000 14515000 23277000 5806200 2567900 3238200 21010 1869 21913;21914 110525;110526;110527;110528;110529;110530;110531;110532;110533;110534;110535;110536;110537;110538;110539;110540;110541;110542;110543;110544;110545;110546;110547 111797;111798;111799;111800;111801;111802;111803;111804;111805;111806;111807;111808;111809;111810;111811;111812;111813;111814;111815;111816;111817;111818;111819;111820 111804 623 24 LLEDKNGEVQNLAVK LDDDSERKVVKMILKLLEDKNGEVQNLAVK LLEDKNGEVQNLAVKCLGPLVSKVKEYQVE K L L V K C 1 0 2 1 0 1 2 1 0 0 3 2 0 0 0 0 0 0 0 2 0 0 15 1 1668.9046 Q86VP6;F5H6I6 Q86VP6 56 70 CAND1 Cullin-associated NEDD8-dissociated protein 1 no no 2;3 1.9314E-05 88.441 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.94689 1.0528 39.674 5 Median 1.0095 1.0528 NaN 1 0 Median 0.84956 0.8761 NaN 1 0 Median 0.83119 0.96792 19.006 2 0 Median 2.3656 2.2534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77204000 39859000 37345000 24188000 11826000 12362000 3497500 1987200 1510300 48070000 25622000 22448000 1449500 424140 1025300 0 0 0 0 0 0 21011 3288 21915 110548;110549;110550;110551;110552 111821;111822;111823;111824 111824 4 LLEEALLR SAGCLASLQQPVGIRLLEEALLRLLPAELP QQPVGIRLLEEALLRLLPAELPAKRVRGKA R L L L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 P78527 P78527 2892 2899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0010879 148.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 4 3 1.1962 1.1241 20.931 18 Median 0.99199 0.95155 28.175 3 0 Median 1.679 1.4336 19.7 3 0 Median 0.95448 1.0288 6.0196 3 0 Median 1.5516 1.3583 11.194 2 0 Median 1.0535 1.0712 15.847 4 0 Median 1.4516 1.2055 5.4168 3 0 Median 716730000 338290000 378440000 163590000 77500000 86091000 116930000 46303000 70631000 342510000 171260000 171240000 29792000 11711000 18082000 55351000 28024000 27326000 8554300 3484400 5069900 21012 2647 21916 110553;110554;110555;110556;110557;110558;110559;110560;110561;110562;110563;110564;110565;110566;110567;110568;110569;110570 111825;111826;111827;111828;111829;111830;111831;111832;111833;111834;111835;111836;111837;111838;111839;111840;111841;111842;111843;111844;111845;111846;111847;111848;111849;111850 111826 26 LLEEAQLQDLEK KKIFNSDELIHFRLRLLEEAQLQDLEKALV RLRLLEEAQLQDLEKALVLANPEVSLWRKQ R L L E K A 1 0 0 1 0 2 3 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 12 0 1427.7508 Q9NU22;Q5T795 Q9NU22 222 233 MDN1 Midasin yes no 2 5.3523E-06 142.83 By MS/MS By matching 2 1 1.0431 1.1107 58.913 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62943 0.67219 71.017 2 0 Median 1.2434 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44674000 21565000 23109000 0 0 0 0 0 0 44231000 21367000 22864000 443280 198450 244830 0 0 0 0 0 0 21013 4112 21917 110571;110572;110573 111851;111852 111851 2 LLEEDVKR AELSEKSGMLQAEKKLLEEDVKRWKARNQH MLQAEKKLLEEDVKRWKARNQHLVSQQKDP K L L K R W 0 1 0 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 1 1000.5553 P12270 P12270 1327 1334 TPR Nucleoprotein TPR yes yes 2 0.019003 53.166 By matching By MS/MS By MS/MS By matching 1 2 1 2 1.208 1.2066 32.575 6 Median 1.116 1.1533 NaN 1 0 Median 1.5476 1.4874 6.5861 2 1 Median 0.9669 1.1493 NaN 1 0 Median 0.93157 0.88338 50.475 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6172200 2772800 3399400 669430 282020 387410 2866200 1173300 1693000 1472500 766790 705680 1164100 550700 613350 0 0 0 0 0 0 21014 1978 21918 110574;110575;110576;110577;110578;110579 111853;111854 111853 2 LLEEEDSKLK KRRLDQLERKKETQRLLEEEDSKLKGGKAP KETQRLLEEEDSKLKGGKAPRVATSSKVTR R L L L K G 0 0 0 1 0 0 3 0 0 0 3 2 0 0 0 1 0 0 0 0 0 0 10 1 1202.6394 Q96CT7;M0R2F5 Q96CT7 73 82 CCDC124 Coiled-coil domain-containing protein 124 yes no 2;3 0.00022718 107.15 By matching By MS/MS By MS/MS By matching 1 4 4 1 1.0059 0.96826 19.104 10 Median 0.70715 0.68502 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0583 1.0845 8.0837 4 0 Median 1.0545 0.93493 11.181 4 0 Median NaN NaN NaN 0 0 Median 0.79552 0.67962 NaN 1 0 Median 50580000 21970000 28610000 1349700 748190 601500 0 0 0 19459000 7069800 12389000 29243000 13836000 15407000 0 0 0 529330 316140 213180 21015 3621 21919 110580;110581;110582;110583;110584;110585;110586;110587;110588;110589 111855;111856;111857;111858;111859;111860;111861;111862;111863;111864;111865;111866 111861 12 LLEEEIIAFSK RLHQEERMKLEEKRRLLEEEIIAFSKKKAT EKRRLLEEEIIAFSKKKATSEIFHSQSFLA R L L S K K 1 0 0 0 0 0 3 0 0 2 2 1 0 1 0 1 0 0 0 0 0 0 11 0 1290.7071 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 412 422 SEPT10 Septin-10 yes no 2 0.00021279 98.249 By MS/MS By matching By matching By matching 2 2 1 1 0.91311 0.84321 11.518 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90956 0.89538 3.3657 2 0 Median 0.9178 0.80444 1.5328 2 0 Median 0.687 0.66509 NaN 1 0 Median 1.0263 0.87958 NaN 1 0 Median 52902000 27976000 24926000 0 0 0 0 0 0 49498000 26214000 23283000 2775000 1388300 1386700 416650 245570 171080 212400 127860 84540 21016 626 21920 110590;110591;110592;110593;110594;110595 111867;111868;111869;111870 111870 4 LLEEEIQAPTSSK YRIDPNVLLDPADEKLLEEEIQAPTSSKRS EKLLEEEIQAPTSSKRSQQHAKVVPWMRKT K L L S K R 1 0 0 0 0 1 3 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1443.7457 Q8N7H5;B4DGJ5 Q8N7H5 107 119 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 4.4454E-07 133.89 By MS/MS By MS/MS 1 1 1.3266 1.1361 42.585 2 Median NaN NaN NaN 0 0 Median 1.7764 1.5353 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99076 0.84071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9353200 4254500 5098700 0 0 0 1784900 744630 1040200 0 0 0 7568400 3509900 4058500 0 0 0 0 0 0 21017 3393 21921 110596;110597 111871;111872;111873 111872 3 LLEEENQESLR QEPLESVEVNQETFRLLEEENQESLRSLGA ETFRLLEEENQESLRSLGAWNLENLRSPEE R L L L R S 0 1 1 0 0 1 4 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 11 0 1358.6678 P48681 P48681 883 893 NES Nestin yes yes 2 9.8524E-28 160.59 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21018 2366 21922 110598 111874 111874 1 LLEEERDQR QQLCNTRQEVNELRKLLEEERDQRVAAENA VNELRKLLEEERDQRVAAENALSVAEEQIR K L L Q R V 0 2 0 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1186.5942 Q14789 Q14789 3156 3164 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.021282 38.303 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 847700 0 847700 0 0 0 847700 0 847700 0 0 0 0 0 0 0 0 0 0 0 0 21019 2900 21923 110599 111875 111875 1 LLEEESSK QARQDEETVRKLQARLLEEESSKRAELEKW VRKLQARLLEEESSKRAELEKWHLEQQQAI R L L S K R 0 0 0 0 0 0 3 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 8 0 933.46549 Q9UH65;E7EMB1 Q9UH65 453 460 SWAP70 Switch-associated protein 70 yes no 2 0.0081051 64.265 By MS/MS 1 1.5157 1.3091 NaN 1 Median NaN NaN NaN 0 0 Median 1.5157 1.3091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2127100 920200 1206900 0 0 0 2127100 920200 1206900 0 0 0 0 0 0 0 0 0 0 0 0 21020 4270 21924 110600 111876;111877 111876 2 LLEEESSKR QARQDEETVRKLQARLLEEESSKRAELEKW RKLQARLLEEESSKRAELEKWHLEQQQAIQ R L L K R A 0 1 0 0 0 0 3 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 9 1 1089.5666 Q9UH65;E7EMB1 Q9UH65 453 461 SWAP70 Switch-associated protein 70 yes no 2 0.0094273 53.968 By matching By MS/MS 1 1 0.83598 0.80978 0.51319 2 Median 0.79273 0.80684 NaN 1 0 Median 0.88159 0.81272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1497500 745660 751880 328650 181890 146760 1168900 563760 605120 0 0 0 0 0 0 0 0 0 0 0 0 21021 4270 21925 110601;110602 111878 111878 1 LLEEFVNHIQELQIMDER GGGSRGGPEAFDPKRLLEEFVNHIQELQIM EFVNHIQELQIMDERIQRKVEKLEQQCQKE R L L E R I 0 1 1 1 0 2 4 0 1 2 3 0 1 1 0 0 0 0 0 1 0 0 18 0 2255.1256 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 42 59 EXOC5 Exocyst complex component 5 yes no 3 0.002099 41.912 By MS/MS 1 1.193 1.0338 NaN 1 Median NaN NaN NaN 0 0 Median 1.193 1.0338 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3425000 1414800 2010200 0 0 0 3425000 1414800 2010200 0 0 0 0 0 0 0 0 0 0 0 0 21022 181 21926 110603 111879 111879 1 LLEEGVLR IQEAQVELQKASEERLLEEGVLRQIPVVGS QKASEERLLEEGVLRQIPVVGSVLNWFSPV R L L L R Q 0 1 0 0 0 0 2 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 927.53893 Q6P996;H3BND4 Q6P996 632 639 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.017258 68.915 By MS/MS By MS/MS By matching 1 1 1 1.0391 0.93781 26.642 3 Plateau 0.87929 0.83206 NaN 1 1 Median 1.0868 0.93907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65741 0.56397 NaN 1 0 Median 17444000 8747200 8696900 9269000 4737400 4531600 7215400 3436100 3779300 0 0 0 0 0 0 0 0 0 959660 573660 385990 21023 3164 21927 110604;110605;110606 111880;111881 111880 2 LLEELEEGQK ______________________________ PRNFRLLEELEEGQKGVGDGTVSWGLEDDE R L L Q K G 0 0 0 0 0 1 4 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1186.6081 Q13404;I3L0A0;E5RIF1;D6RG00;Q15819;H0YBX6 Q15819 15 24 UBE2V1;TMEM189-UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 2 2.0222E-07 135.79 By MS/MS By MS/MS By MS/MS 1 2 1 1.1671 1.1938 9.8312 4 Median 1.0655 0.9977 NaN 1 0 Median 1.1895 1.2116 3.4458 2 1 Median 1.2785 1.2052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 232130000 102970000 129160000 107240000 48640000 58604000 43023000 17667000 25356000 81861000 36663000 45198000 0 0 0 0 0 0 0 0 0 21024 2973;2809 21928 110607;110608;110609;110610 111882;111883;111884;111885;111886 111886 5 LLEELLNK ALEALPQLSSGADKKLLEELLNKFKSSMHL SSGADKKLLEELLNKFKSSMHLQLTCFQAA K L L N K F 0 0 1 0 0 0 2 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 8 0 970.5699 Q96KP1 Q96KP1 895 902 EXOC2 Exocyst complex component 2 yes yes 2 0.038988 37.094 By MS/MS By matching By matching 2 1 1 1.3902 1.2464 25.61 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.227 1.339 40.841 2 0 Median 1.3299 1.115 NaN 1 0 Median 1.4532 1.3933 NaN 1 0 Median NaN NaN NaN 0 0 Median 6027100 2703400 3323700 0 0 0 0 0 0 3007900 1595600 1412300 1140000 500960 639060 1879200 606890 1272300 0 0 0 21025 3695 21929 110611;110612;110613;110614 111887;111888 111887 2 LLEENVSAFK EANVLATAPDKKKQKLLEENVSAFKTEYDA KKKQKLLEENVSAFKTEYDAVAEKAGKVEA K L L F K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1148.6077 Q9NTJ3;E9PD53 Q9NTJ3 858 867 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00036244 112.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.92401 0.8897 8.6826 5 Median 0.92401 0.8897 NaN 1 0 Median 0.9666 0.86082 6.9259 2 0 Median NaN NaN NaN 0 0 Median 1.0502 0.9433 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88508 0.75884 NaN 1 0 Median 47183000 22056000 25126000 19408000 9427200 9980900 16189000 7380100 8808800 0 0 0 10508000 4583200 5925000 0 0 0 1077400 665960 411470 21026 4108 21930 110615;110616;110617;110618;110619;110620 111889;111890;111891;111892;111893;111894 111890 6 LLEENVSAFKTEYDAVAEK EANVLATAPDKKKQKLLEENVSAFKTEYDA NVSAFKTEYDAVAEKAGKVEAEVKRLHNTI K L L E K A 3 0 1 1 0 0 4 0 0 0 2 2 0 1 0 1 1 0 1 2 0 0 19 1 2155.0685 Q9NTJ3;E9PD53 Q9NTJ3 858 876 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 4.3094E-07 59.003 By MS/MS By MS/MS 1 1 0.98641 1.0385 8.3902 2 Median 1.0177 0.97865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95607 1.1019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20779000 10170000 10608000 13051000 6276000 6774900 0 0 0 7727600 3894400 3833200 0 0 0 0 0 0 0 0 0 21027 4108 21931 110621;110622 111895;111896;111897;111898 111898 4 LLEEQLQHEISNK EKMQQSVYVKDDKIRLLEEQLQHEISNKME IRLLEEQLQHEISNKMEEFKILNDQNKALK R L L N K M 0 0 1 0 0 2 3 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1579.8206 Q86UP2 Q86UP2 684 696 KTN1 Kinectin yes yes 2;3 2.6516E-05 124.12 By MS/MS By matching By MS/MS By MS/MS 3 2 2 3 1.2496 1.161 18.407 10 Median 1.237 1.1905 11.323 3 0 Median 1.3269 1.1486 27.298 2 0 Median 1.1024 1.1782 30.951 2 1 Median 1.3159 1.1322 22.455 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82872000 37437000 45435000 48067000 21859000 26208000 7542400 3504500 4038000 20558000 9123300 11434000 6705000 2950600 3754400 0 0 0 0 0 0 21028 3280 21932 110623;110624;110625;110626;110627;110628;110629;110630;110631;110632 111899;111900;111901;111902;111903;111904 111899 6 LLEEYTQLAR DPAETLHLSEPLGGKLLEEYTQLARECGLW PLGGKLLEEYTQLARECGLWLSLGGFHERG K L L A R E 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 1 0 0 0 10 0 1234.6558 Q86X76 Q86X76 109 118 NIT1 Nitrilase homolog 1 yes yes 2 0.0083048 59.8 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.84921 0.83405 30.211 5 Median 0.80844 0.77067 9.5351 2 1 Median 1.8793 1.5694 NaN 1 0 Median 0.84346 0.83405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2435 0.93081 NaN 1 0 Median 29130000 17649000 11481000 18456000 12837000 5619100 3887800 1338800 2549000 3957900 2310000 1647900 0 0 0 0 0 0 2827700 1163100 1664600 21029 3300 21933 110633;110634;110635;110636;110637 111905;111906;111907 111905 3 LLEFELAQLTK KQMKQEINTLLEAKRLLEFELAQLTKQYRG EAKRLLEFELAQLTKQYRGNEGQMRELQDQ R L L T K Q 1 0 0 0 0 1 2 0 0 0 4 1 0 1 0 0 1 0 0 0 0 0 11 0 1303.7388 A0A0U1RQV4;Q13464 A0A0U1RQV4 820 830 ROCK1 Rho-associated protein kinase 1 yes no 2 0.00065076 65.347 By matching By MS/MS By matching 1 2 1 1.1468 1.0514 16.328 4 Median 1.1824 1.1128 NaN 1 0 Median 1.0596 0.92658 23.926 2 0 Median NaN NaN NaN 0 0 Median 1.1122 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4541400 2190600 2350800 1344500 605610 738910 3106700 1540700 1566000 0 0 0 90230 44306 45924 0 0 0 0 0 0 21030 305 21934 110638;110639;110640;110641 111908;111909 111909 2 LLEFNQGK LRPETAQGIFLNFKRLLEFNQGKLPFAAAQ IFLNFKRLLEFNQGKLPFAAAQIGNSFRNE R L L G K L 0 0 1 0 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 947.50763 P41250 P41250 311 318 GARS Glycine--tRNA ligase yes yes 2 9.3664E-05 110.61 By MS/MS By MS/MS 1 1 1.8372 1.6284 58.836 2 Median 2.747 2.4685 NaN 1 1 Median 1.2287 1.0742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22083000 7445100 14638000 16803000 5015000 11788000 5279700 2430200 2849600 0 0 0 0 0 0 0 0 0 0 0 0 21031 2301 21935 110642;110643 111910;111911 111910 2 LLEGEDAHLSSQQASGQSYSSR DVKTRLEQEIATYRRLLEGEDAHLSSQQAS HLSSQQASGQSYSSREVFTSSSSSSSRQTR R L L S R E 2 1 0 1 0 3 2 2 1 0 3 0 0 0 0 6 0 0 1 0 0 0 22 0 2349.0833 CON__P08779;P08779 CON__P08779 420 441 KRT16 Keratin, type I cytoskeletal 16 yes no 3 8.3569E-49 153.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 6 3 2 0.1682 0.15407 56.799 6 Median 0.11339 0.10964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12905 0.11346 NaN 1 1 Median 0.25062 0.25739 29.315 2 2 Median 0.25778 0.20759 87.878 2 2 Median 104230000 102070000 2163400 8576900 8420100 156810 7851600 7851600 0 45255000 45255000 0 18194000 18003000 191720 20635000 19160000 1475000 3716800 3376900 339910 + 21032 754 21936 110644;110645;110646;110647;110648;110649;110650;110651;110652;110653;110654;110655;110656;110657;110658;110659;110660;110661 111912;111913;111914;111915;111916;111917;111918;111919;111920;111921;111922;111923;111924;111925;111926;111927;111928;111929 111921 18 LLEGEDAHLSSSQFSSGSQSSR DVKTRLEQEIATYRRLLEGEDAHLSSSQFS HLSSSQFSSGSQSSRDVTSSSRQIRTKVMD R L L S R D 1 1 0 1 0 2 2 2 1 0 3 0 0 1 0 8 0 0 0 0 0 0 22 0 2308.0567 P02533;CON__P02533;CON__Q61782 P02533 418 439 KRT14 Keratin, type I cytoskeletal 14 yes no 3 9.3032E-48 149.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 7 8 5 3 0.11072 0.11234 109.55 7 Median 0.017695 0.016608 158.79 3 3 Median 0.13847 0.11719 NaN 1 1 Median 0.11072 0.11234 NaN 1 1 Median 0.070413 0.060682 NaN 1 1 Median 0.16329 0.16801 NaN 1 1 Median NaN NaN NaN 0 0 Median 346970000 344680000 2286800 71491000 70324000 1167100 39371000 39253000 118270 97290000 97182000 107220 62121000 62005000 116620 65068000 64290000 777620 11627000 11627000 0 + 21033 739 21937 110662;110663;110664;110665;110666;110667;110668;110669;110670;110671;110672;110673;110674;110675;110676;110677;110678;110679;110680;110681;110682;110683;110684;110685;110686;110687;110688;110689;110690;110691;110692;110693;110694;110695;110696;110697 111930;111931;111932;111933;111934;111935;111936;111937;111938;111939;111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960;111961;111962;111963;111964;111965 111948 36 LLEGEDAHLTQYK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R L L Y K K 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 13 0 1515.7569 CON__Q04695;Q04695;F5GWP8;A0A3B3IS58 CON__Q04695 387 399 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 2.5695E-15 186.72 By MS/MS By MS/MS By matching 3 1 1 1.3774 1.3085 30.105 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4127 1.3419 3.9119 3 3 Median 0.77484 0.6995 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1272 0.93828 NaN 1 0 Median 329100000 144850000 184260000 0 0 0 0 0 0 280880000 117380000 163500000 45845000 26690000 19154000 0 0 0 2378700 778910 1599800 + 21034 768 21938 110698;110699;110700;110701;110702 111966;111967;111968;111969;111970 111970 5 LLEGEDAHLTQYKK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RLLEGEDAHLTQYKKEPVTTRQVRTIVEEV R L L K K E 1 0 0 1 0 1 2 1 1 0 3 2 0 0 0 0 1 0 1 0 0 0 14 1 1643.8519 CON__Q04695;Q04695;F5GWP8;A0A3B3IS58 CON__Q04695 387 400 KRT17 Keratin, type I cytoskeletal 17 yes no 3;4 1.2951E-06 127.02 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 3 1 3 1.064 1.0763 43.711 13 Median 1.215 1.1742 NaN 1 0 Median 1.6208 1.5269 NaN 1 0 Median 1.6175 1.6909 28.376 4 0 Median 0.83099 0.78929 11.476 3 0 Median 1.9374 2.0683 NaN 1 0 Median 0.83235 0.74184 12.021 3 0 Plateau 134040000 68626000 65419000 1808400 989980 818420 1381400 587610 793790 26183000 13151000 13033000 71070000 38816000 32255000 13465000 4505300 8960000 20136000 10577000 9559300 + 21035 768 21939 110703;110704;110705;110706;110707;110708;110709;110710;110711;110712;110713;110714;110715;110716 111971;111972;111973;111974;111975;111976;111977;111978;111979;111980;111981;111982;111983 111977 13 LLEGEECR NVKLALDVEIATYRKLLEGEECRMSGDLSS EIATYRKLLEGEECRMSGDLSSNVTVSVTS K L L C R M 0 1 0 0 1 0 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1004.4597 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;H0YI76;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4 CON__P35908 489 496 KRT6A;KRT5;KRT6C;KRT2;KRT78 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 78 no no 2 0.0089543 79.116 By MS/MS By MS/MS 1 1 0.12118 0.12181 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12118 0.12181 NaN 1 1 Median NaN NaN NaN 0 0 Median 4784800 4490000 294820 0 0 0 0 0 0 1228600 1228600 0 0 0 0 3556300 3261400 294820 0 0 0 + 21036 764;765;757;741;748;766;788 21940 110717;110718 111984;111985 111984 2 LLEGEEER DIKLALDMEIHAYRKLLEGEEERLRLSPSP EIHAYRKLLEGEEERLRLSPSPTSQRSRGR K L L E R L 0 1 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 973.47164 P20700;E9PBF6;P02545;A0A0C4DGC5;Q3BDU5;Q03252 P02545 379 386 LMNB1;LMNA;LMNB2 Lamin-B1;Prelamin-A/C;Lamin-A/C;Lamin-B2 no no 2 2.6073E-07 169.37 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 7 1.3239 1.1267 30.544 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0602 1.0588 11.129 3 1 Median 2.1185 1.8407 35.36 4 0 Median 0.90827 0.90887 5.5671 4 0 Median 1.466 1.1891 16.946 7 0 Median 552230000 262560000 289670000 0 0 0 0 0 0 93528000 45483000 48045000 27075000 10228000 16847000 337700000 169550000 168150000 93929000 37299000 56630000 21037 1834;2084;3010;2709 21941 110719;110720;110721;110722;110723;110724;110725;110726;110727;110728;110729;110730;110731;110732;110733;110734;110735;110736;110737 111986;111987;111988;111989;111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005;112006;112007;112008;112009;112010;112011;112012;112013;112014;112015 111995 30 LLEGEEERLK DVKLALDMEISAYRKLLEGEEERLKLSPSP SAYRKLLEGEEERLKLSPSPSSRVTVSRAS K L L L K L 0 1 0 0 0 0 4 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1214.6507 P20700;Q03252 P20700 380 389 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2;3 7.5622E-06 128.28 By matching By MS/MS By MS/MS 1 5 3 1.7524 1.5994 73.95 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24092 0.20985 NaN 1 0 Median 1.1394 1.2541 43.649 5 3 Median 1.8573 1.6003 5.7507 3 0 Median 240050000 107300000 132750000 0 0 0 0 0 0 0 0 0 1474700 1201300 273460 200790000 93540000 107250000 37781000 12562000 25219000 21038 2084;2709 21942 110738;110739;110740;110741;110742;110743;110744;110745;110746 112016;112017;112018;112019;112020;112021;112022;112023;112024;112025;112026;112027 112022 12 LLEGEEERLR DIKLALDMEIHAYRKLLEGEEERLRLSPSP HAYRKLLEGEEERLRLSPSPTSQRSRGRAS K L L L R L 0 2 0 0 0 0 4 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1242.6568 P02545;A0A0C4DGC5;Q3BDU5 P02545 379 388 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 8.3862E-07 166.17 By MS/MS By MS/MS 6 4 1.1749 1.1941 21.314 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0282 1.1229 22.586 6 0 Median 1.4273 1.2903 11.015 4 0 Median 266320000 121310000 145010000 0 0 0 0 0 0 0 0 0 0 0 0 196390000 94105000 102290000 69924000 27201000 42724000 21039 1834;3010 21943 110747;110748;110749;110750;110751;110752;110753;110754;110755;110756 112028;112029;112030;112031;112032;112033;112034;112035;112036;112037;112038;112039;112040;112041;112042 112032 15 LLEGEESR NVKLALDIEIATYRKLLEGEESRLESGMQN EIATYRKLLEGEESRLESGMQNMSIHTKTT K L L S R L 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 931.46108 P05787;CON__P05787;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;CON__Q9NSB2;CON__Q6ISB0;Q9NSB2;CON__Q9H552;P08670;B0YJC4;B0YJC5;P17661;H7C5W5;P41219 P05787 394 401 KRT8;KRT7;KRT84;VIM;DES;PRPH Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 7;Keratin, type II cuticular Hb4;Vimentin;Desmin;Peripherin no no 2 0.0011297 147.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 3 4 7 1.1784 1.0539 17.862 21 Median 1.0423 1.0031 6.9846 2 0 Median 1.446 1.2351 20.579 2 0 Median 1.1843 1.1621 17.808 5 0 Median 1.182 1.0315 18.377 2 0 Median 1.2245 1.2565 2.2625 3 0 Median 1.0816 0.88018 10.577 7 0 Median 417840000 187190000 230660000 28705000 14041000 14664000 89907000 36545000 53362000 41189000 18831000 22359000 8076500 3869700 4206800 177750000 79994000 97754000 72217000 33907000 38310000 + 21040 750;1907;792 21944 110757;110758;110759;110760;110761;110762;110763;110764;110765;110766;110767;110768;110769;110770;110771;110772;110773;110774;110775;110776;110777;110778;110779 112043;112044;112045;112046;112047;112048;112049;112050;112051;112052;112053;112054;112055;112056;112057;112058;112059;112060;112061;112062;112063;112064;112065;112066;112067;112068;112069;112070;112071;112072;112073;112074;112075 112045 33 LLEGEESRLESGMQNMSIHTK NVKLALDIEIATYRKLLEGEESRLESGMQN SRLESGMQNMSIHTKTTSGYAGGLSSAYGG K L L T K T 0 1 1 0 0 1 4 2 1 1 3 1 2 0 0 3 1 0 0 0 0 0 21 1 2388.1413 P05787;CON__P05787 P05787 394 414 KRT8 Keratin, type II cytoskeletal 8 yes no 3;4 3.0316E-12 77.037 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1.1584 1.1425 25.673 8 Median 1.0271 1.023 4.9879 2 1 Median NaN NaN NaN 0 0 Median 1.1923 1.2711 15.44 2 0 Median 1.1919 1.1454 NaN 1 1 Median 1.3843 1.4031 43.478 3 1 Median NaN NaN NaN 0 0 Median 148620000 67492000 81130000 32034000 13779000 18255000 0 0 0 18574000 7787300 10787000 2519000 1115600 1403400 95495000 44810000 50685000 0 0 0 + 21041 750 21945 110780;110781;110782;110783;110784;110785;110786;110787 112076;112077;112078;112079;112080;112081;112082;112083;112084;112085 112084 10 LLEGIGLENLDSPAATK VAQALKADLVPYLLKLLEGIGLENLDSPAA EGIGLENLDSPAATKAQIVKALKAMTRSLQ K L L T K A 2 0 1 1 0 0 2 2 0 1 4 1 0 0 1 1 1 0 0 0 0 0 17 0 1739.9305 O75165;H0YA63 O75165 2140 2156 DNAJC13 DnaJ homolog subfamily C member 13 yes no 2 0.0077463 44.616 By MS/MS 1 0.91928 0.87309 NaN 1 Median 0.91928 0.87309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2522400 1293800 1228500 2522400 1293800 1228500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21042 1653 21946 110788 112086 112086 1 LLEGLSYYKPPSPSSAEK ELSQIEAELNKHWRRLLEGLSYYKPPSPSS GLSYYKPPSPSSAEKVKANKDVASPLKELG R L L E K V 1 0 0 0 0 0 2 1 0 0 3 2 0 0 3 4 0 0 2 0 0 0 18 1 1965.0095 Q5SRE5;H7C4K7 Q5SRE5 43 60 NUP188 Nucleoporin NUP188 homolog yes no 3 9.0707E-05 41.554 By matching By MS/MS By matching 1 2 1 0.74669 0.78081 28.346 4 Median NaN NaN NaN 0 0 Median 0.49589 0.47117 NaN 1 0 Median 0.74669 0.85615 4.2175 2 1 Median 0.78774 0.73366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20324000 11327000 8997200 0 0 0 1474300 829540 644800 18295000 10192000 8103300 554370 305290 249070 0 0 0 0 0 0 21043 3074 21947 110789;110790;110791;110792 112087;112088;112089 112089 3 LLEHLPQEVPYNVQQK SQTPEEICANIIREKLLEHLPQEVPYNVQQ LEHLPQEVPYNVQQKTAVWEEGPGGELVIQ K L L Q K T 0 0 1 0 0 3 2 0 1 0 3 1 0 0 2 0 0 0 1 2 0 0 16 0 1934.0262 O75616;K7EQJ8 O75616 356 371 ERAL1 GTPase Era, mitochondrial yes no 3 0.0039962 26.435 By MS/MS 1 0.63355 0.59177 NaN 1 Median 0.63355 0.59177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7510100 3896200 3613800 7510100 3896200 3613800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21044 1687 21948 110793 112090;112091 112090 2 LLEIDPYLKPYAVDFQR AALNAALADVPELARLLEIDPYLKPYAVDF EIDPYLKPYAVDFQRRYKQFSQILKNIGEN R L L Q R R 1 1 0 2 0 1 1 0 0 1 3 1 0 1 2 0 0 0 2 1 0 0 17 1 2079.1041 Q04446 Q04446 31 47 GBE1 1,4-alpha-glucan-branching enzyme yes yes 3 0.0062411 25.319 By MS/MS By MS/MS 2 1 0.69972 0.64138 1.8019 3 Plateau 0.63589 0.64716 2.4408 2 0 Median 0.69972 0.64138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8423600 4536800 3886700 5314000 3014900 2299000 3109600 1521900 1587700 0 0 0 0 0 0 0 0 0 0 0 0 21045 2711 21949 110794;110795;110796 112092;112093;112094;112095 112093 4 LLEIITTTIEETETQNQGIK ELIQEYGAQSGGLEKLLEIITTTIEETETQ TTTIEETETQNQGIKVAAIRGEVTAADLFN K L L I K V 0 0 1 0 0 2 4 1 0 4 2 1 0 0 0 0 5 0 0 0 0 0 20 0 2273.2002 P58107;A0A075B730 P58107 1827 1846 EPPK1 Epiplakin yes no 3 0.057715 8.089 By MS/MS By matching 1 2 1.3062 1.1399 7.9256 3 Median 1.3225 1.3065 NaN 1 0 Median 1.2938 1.1389 0.12138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18395000 8066500 10328000 2125500 1032800 1092700 16269000 7033700 9235400 0 0 0 0 0 0 0 0 0 0 0 0 21046 2520 21950 110797;110798;110799 112096 112096 1 LLEIQGK PTTGDAGGREPMEEKLLEIQGKIEAVEMHL GREPMEEKLLEIQGKIEAVEMHLTREHMKR K L L G K I 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 Q9UKN8 Q9UKN8 669 675 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.025249 54.525 By MS/MS 1 0.89632 0.95551 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89632 0.95551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2103700 1081800 1021900 0 0 0 0 0 0 2103700 1081800 1021900 0 0 0 0 0 0 0 0 0 21047 4314 21951 110800 112097 112097 1 LLEISAEDAER KKECAARGEDYEKVKLLEISAEDAERWERK EKVKLLEISAEDAERWERKKKRKNPDLGFS K L L E R W 2 1 0 1 0 0 3 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1244.6248 O95926 O95926 100 110 SYF2 Pre-mRNA-splicing factor SYF2 yes yes 2 0.0022965 77.677 By MS/MS 1 0.92736 0.91661 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92736 0.91661 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3685100 1951400 1733700 0 0 0 0 0 0 3685100 1951400 1733700 0 0 0 0 0 0 0 0 0 21048 1803 21952 110801 112098 112098 1 LLEIVER CSIRERMLYSSCKSRLLEIVERQLQMDVIR LYSSCKSRLLEIVERQLQMDVIRKIEIDNG R L L E R Q 0 1 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 870.51747 Q12792 Q12792 279 285 TWF1 Twinfilin-1 yes yes 2 0.01596 69.998 By MS/MS By MS/MS By MS/MS 2 1 1 1.2901 1.0949 18.485 4 Median NaN NaN NaN 0 0 Median 1.2901 1.0949 4.2337 2 0 Median 1.3148 1.2961 NaN 1 1 Median 0.95219 0.83255 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12800000 5126500 7673200 0 0 0 9084200 3546100 5538100 3063600 1275400 1788200 651880 305050 346840 0 0 0 0 0 0 21049 2759 21953 110802;110803;110804;110805 112099;112100;112101;112102 112100 4 LLEIVSYK KKAVELGEKASGKLRLLEIVSYKIIGVHQE KASGKLRLLEIVSYKIIGVHQEDELLECLS R L L Y K I 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 8 0 963.56408 Q93009;H3BND8 Q93009 941 948 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0038087 85.212 By matching By MS/MS By MS/MS 2 2 1 1.3113 1.1113 22.433 5 Median NaN NaN NaN 0 0 Median 1.4681 1.2887 17.489 2 0 Median 0.86057 0.91871 23.633 2 0 Median 1.3113 1.1113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20468000 9938800 10529000 0 0 0 5272700 2156400 3116300 13259000 6924900 6333800 1936600 857490 1079100 0 0 0 0 0 0 21050 3574 21954 110806;110807;110808;110809;110810 112103;112104 112103 2 LLEKIEEK GNSEQRKRLLKERQKLLEKIEEKQKELAET LLKERQKLLEKIEEKQKELAETEPKFNSVK K L L E K Q 0 0 0 0 0 0 3 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 8 1 1000.5805 Q9UQE7 Q9UQE7 333 340 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.01182 136.8 By matching By MS/MS 1 3 1.0722 1.1513 22.912 4 Median 0.78073 0.82925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1003 1.1896 13.365 3 0 Median NaN NaN NaN 0 0 Median 19458000 8923700 10535000 571300 285060 286240 0 0 0 0 0 0 0 0 0 18887000 8638600 10249000 0 0 0 21051 4362 21955 110811;110812;110813;110814 112105;112106 112106 2 LLEKVEGTVR LGGFEQVDLIRPWRRLLEKVEGTVRALLRD RPWRRLLEKVEGTVRALLRDSLLISADDAE R L L V R A 0 1 0 0 0 0 2 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 10 1 1142.6659 Q9NU22 Q9NU22 2117 2126 MDN1 Midasin yes yes 2 0.007233 64.711 By MS/MS 1 0.87866 1.0168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87866 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4176300 1907800 2268500 0 0 0 0 0 0 4176300 1907800 2268500 0 0 0 0 0 0 0 0 0 21052 4112 21956 110815 112107 112107 1 LLELEQDASSAK LNMDLDRASLDLMIRLLELEQDASSAKLLN MIRLLELEQDASSAKLLNEKDMNKIKEKIR R L L A K L 2 0 0 1 0 1 2 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 12 0 1302.6667 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 747 758 WAPAL Wings apart-like protein homolog yes no 2 7.7231E-06 123.63 By MS/MS By MS/MS 1 1 0.7017 0.67117 6.4589 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65986 0.70253 NaN 1 0 Median 0.7462 0.6412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33200000 19613000 13587000 0 0 0 0 0 0 29632000 17275000 12358000 3567500 2338300 1229200 0 0 0 0 0 0 21053 3249 21957 110816;110817 112108;112109 112108 2 LLELFPVNR NSVTSSLRKANLDKRLLELFPVNRQSVDHF ANLDKRLLELFPVNRQSVDHFAKYFTDAGL R L L N R Q 0 1 1 0 0 0 1 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 9 0 1099.639 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4;Q75MG1 E7ETZ4 216 224 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.001612 79.597 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 2 1 0.92357 0.88195 5.29 8 Median 0.92319 0.91434 0.086876 2 0 Median 0.9206 0.80292 NaN 1 0 Median 0.84684 0.87305 7.1623 2 0 Median 0.97381 0.84878 1.7852 2 0 Median NaN NaN NaN 0 0 Median 0.9648 0.90491 NaN 1 0 Median 54904000 27556000 27347000 8458700 4206700 4252000 12786000 5514700 7271200 23810000 13035000 10775000 9400300 4519900 4880400 0 0 0 448390 279820 168570 21054 892 21958 110818;110819;110820;110821;110822;110823;110824;110825 112110;112111;112112;112113;112114;112115;112116;112117;112118 112115 9 LLELGPKPEVAQQTR FKLKNFKTAATFARRLLELGPKPEVAQQTR LLELGPKPEVAQQTRKILSACEKNPTDAYQ R L L T R K 1 1 0 0 0 2 2 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 1 1677.9414 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1128 1142 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2;3 8.0727E-10 125.28 By MS/MS By MS/MS By matching By MS/MS 5 3 1 1 0.78866 0.80573 9.4791 10 Median 0.74445 0.84645 5.6891 5 0 Linear 0.87505 0.80585 8.165 3 0 Plateau 0.78421 0.8883 NaN 1 0 Median 1.0099 0.97057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124240000 64262000 59978000 80379000 41654000 38726000 30679000 16019000 14660000 4188800 2182200 2006600 8992600 4407200 4585400 0 0 0 0 0 0 21055 2473 21959 110826;110827;110828;110829;110830;110831;110832;110833;110834;110835 112119;112120;112121;112122;112123;112124;112125;112126;112127;112128;112129;112130;112131;112132 112119 14 LLELLPGK GYAEVVVASENSVHKLLELLPGKVLNGEKV SENSVHKLLELLPGKVLNGEKVDVRPATRQ K L L G K V 0 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 8 0 881.5586 Q8N684;F5H669;F5H6M0;F5H047;J3QT54 Q8N684 141 148 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.0065188 70.912 By matching By matching By MS/MS By matching By matching By matching 1 2 5 2 2 1 1.0573 0.99443 12.024 13 Median 0.83657 0.8245 NaN 1 0 Median 1.0525 0.91545 13.39 2 0 Median 0.9718 1.0456 11.98 5 0 Median 1.1655 1.0122 8.5639 2 0 Median 0.9845 0.98213 22.643 2 0 Median 1.1608 0.99443 NaN 1 0 Median 56802000 27658000 29144000 762950 344950 418000 491910 243300 248620 48511000 23826000 24685000 4334400 1893900 2440400 2479900 1228200 1251800 221640 121460 100180 21056 3385 21960 110836;110837;110838;110839;110840;110841;110842;110843;110844;110845;110846;110847;110848 112133;112134;112135 112134 3 LLELQELVLR YISRLAQDKEEMKVKLLELQELVLRLVGDR EMKVKLLELQELVLRLVGDRNEWHGRFLAA K L L L R L 0 1 0 0 0 1 2 0 0 0 5 0 0 0 0 0 0 0 0 1 0 0 10 0 1224.7442 A0A2Q2TH77;Q08379;A0A087WYC0 A0A2Q2TH77 870 879 GOLGA2 Golgin subfamily A member 2 yes no 2 0.00047649 90.657 By MS/MS By MS/MS By matching 1 3 1 1.2179 1.037 18.067 5 Median 1.0279 1.0268 NaN 1 0 Median 1.2253 1.037 22.509 3 0 Median 1.2179 1.2937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11582000 5288000 6294100 1485800 667190 818600 9877000 4520100 5356800 219260 100630 118630 0 0 0 0 0 0 0 0 0 21057 355 21961 110849;110850;110851;110852;110853 112136;112137 112137 2 LLELQSIGTNNFLR TLDNLTRPQLVALCKLLELQSIGTNNFLRF KLLELQSIGTNNFLRFQLTMRLRSIKADDK K L L L R F 0 1 2 0 0 1 1 1 0 1 4 0 0 1 0 1 1 0 0 0 0 0 14 0 1616.8886 O95202 O95202 332 345 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 3.4453E-08 105.86 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.4826 1.3409 79.601 6 Median 1.429 1.3517 NaN 1 0 Median 1.6002 1.3843 5.6386 2 0 Median 1.29 1.327 NaN 1 0 Median 0.22608 0.21904 NaN 1 0 Median 1.9224 2.0387 NaN 1 1 Median NaN NaN NaN 0 0 Median 52907000 19153000 33754000 17632000 7622400 10010000 27453000 8524800 18928000 6852700 2602000 4250700 287240 212660 74586 681950 191320 490630 0 0 0 21058 1754 21962 110854;110855;110856;110857;110858;110859 112138;112139;112140;112141;112142;112143;112144;112145;112146;112147 112138 10 LLELQYFISR EHLYTEKMVEDCEHRLLELQYFISRDWKLD DCEHRLLELQYFISRDWKLDPVLYRKCQGD R L L S R D 0 1 0 0 0 1 1 0 0 1 3 0 0 1 0 1 0 0 1 0 0 0 10 0 1280.7129 Q92896;H3BM42 Q92896 546 555 GLG1 Golgi apparatus protein 1 yes no 2 0.013431 40.045 By MS/MS By matching 1 1 1.3558 1.2988 3.5964 2 Median NaN NaN NaN 0 0 Median 1.557 1.3322 NaN 1 0 Median 1.1807 1.2662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2906500 1112200 1794400 0 0 0 2210300 808150 1402200 696190 304010 392180 0 0 0 0 0 0 0 0 0 21059 3563 21963 110860;110861 112148 112148 1 LLELTSSYSPDVSDYK LLAAAPQVGEKIAFKLLELTSSYSPDVSDY LELTSSYSPDVSDYKEGRILSHNPETQQVD K L L Y K E 0 0 0 2 0 0 1 0 0 0 3 1 0 0 1 4 1 0 2 1 0 0 16 0 1815.8778 P38432 P38432 481 496 COIL Coilin yes yes 2 1.932E-07 85.288 By MS/MS 1 1.1378 1.2107 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1378 1.2107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3104700 1340800 1763900 0 0 0 0 0 0 3104700 1340800 1763900 0 0 0 0 0 0 0 0 0 21060 2274 21964 110862 112149 112149 1 LLEMNLMHAPQVADAILGNQMFTHYDR ALKNNRPSEGPLQTRLLEMNLMHAPQVADA ADAILGNQMFTHYDRAHIAQLCEKAGLLQR R L L D R A 3 1 2 2 0 2 1 1 2 1 4 0 3 1 1 0 1 0 1 1 0 0 27 0 3127.5042 A0A087WVQ6;Q00610 A0A087WVQ6 588 614 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 4 1.2331E-07 48.097 By MS/MS 6 1.123 0.95495 11.386 6 Median NaN NaN NaN 0 0 Median 1.123 0.95495 11.386 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60132000 25265000 34867000 0 0 0 60132000 25265000 34867000 0 0 0 0 0 0 0 0 0 0 0 0 21061 44 21965;21966 110863;110864;110865;110866;110867;110868 112150;112151;112152;112153 112152 17;18 2 LLEMTSR TGPLLQFDYKAVADRLLEMTSRKNTPHFNR DYKAVADRLLEMTSRKNTPHFNRKRLSKLI R L L S R K 0 1 0 0 0 0 1 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 7 0 848.44259 Q14684 Q14684 307 313 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.034572 47.743 By MS/MS 1 1.0682 1.1431 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0682 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4175800 2301100 1874700 0 0 0 0 0 0 4175800 2301100 1874700 0 0 0 0 0 0 0 0 0 21062 2890 21967 110869 112154 112154 1 LLENMPMPWEQIR VYLGALKYMPHAVLKLLENMPMPWEQIRDV LKLLENMPMPWEQIRDVPVLYHITGAISFV K L L I R D 0 1 1 0 0 1 2 0 0 1 2 0 2 0 2 0 0 1 0 0 0 0 13 0 1655.8164 Q6P2Q9 Q6P2Q9 102 114 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00027712 78.655 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.86181 0.81027 19.495 6 Median 0.86181 0.85567 6.9014 2 0 Median NaN NaN NaN 0 0 Median 0.62836 0.68797 10.753 2 0 Median 0.91776 0.80565 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2237 1.1399 NaN 1 0 Median 21639000 11003000 10636000 3863800 1851600 2012200 0 0 0 17056000 8805900 8249700 589090 301890 287200 0 0 0 130620 43946 86673 21063 3157 21968;21969 110870;110871;110872;110873;110874;110875 112155;112156;112157;112158;112159;112160;112161;112162;112163 112159 1675;1676 9 LLENMQSDLR ______________________________ EAVKKLLENMQSDLRALSLECKKKFPPVKE K L L L R A 0 1 1 1 0 1 1 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 10 0 1217.6074 A0A286YFF8;Q7Z3U7;F8VZV1;F8VZV6;F8VQS2 A0A286YFF8 13 22 MON2 Protein MON2 homolog yes no 2 0.00033784 97.431 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.79081 0.73612 10.71 5 Median 0.71748 0.67346 NaN 1 0 Median 1.0252 0.87658 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79081 0.67669 NaN 1 0 Median 0.72237 0.73612 NaN 1 0 Median 0.89524 0.75268 NaN 1 0 Median 30503000 17703000 12800000 11442000 6838500 4603300 4505600 2132900 2372700 0 0 0 561560 279970 281600 11800000 7318700 4481200 2194300 1132800 1061500 21064 353 21970 110876;110877;110878;110879;110880 112164;112165;112166 112165 3 LLENPTINHQK IEEEFVSLVTGCCYRLLENPTINHQKNRPT CCYRLLENPTINHQKNRPTREAITHLLGVA R L L Q K N 0 0 2 0 0 1 1 0 1 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1305.7041 Q15021;E7EN77 Q15021 205 215 NCAPD2 Condensin complex subunit 1 yes no 2;3 0.00065676 65.224 By MS/MS By MS/MS By matching 1 2 1 0.87606 0.7741 19.531 4 Median 1.1109 1.0535 NaN 1 0 Median 0.87606 0.76435 14.369 2 0 Median NaN NaN NaN 0 0 Median 0.77772 0.70822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8819700 4500700 4319100 2447300 1300400 1146900 5191700 2558700 2633000 0 0 0 1180800 641550 539220 0 0 0 0 0 0 21065 2915 21971 110881;110882;110883;110884 112167;112168;112169 112169 3 LLENVTQEQNELLK LPVFQRTNQLLQDIKLLENVTQEQNELLKV KLLENVTQEQNELLKVVIKQTNEWDEEIEN K L L L K V 0 0 2 0 0 2 3 0 0 0 4 1 0 0 0 0 1 0 0 1 0 0 14 0 1669.8887 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3979 3992 SYNE2 Nesprin-2 yes no 2 2.503E-07 160.18 By MS/MS By matching By matching 1 1 1 0.97747 1.0256 21.418 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9138 0.97498 NaN 1 0 Median 1.5626 1.4453 NaN 1 0 Median 0.97747 1.0256 NaN 1 0 Median NaN NaN NaN 0 0 Median 26699000 13802000 12897000 0 0 0 0 0 0 21865000 11711000 10154000 511140 177650 333490 4322900 1913400 2409500 0 0 0 21066 3521 21972 110885;110886;110887 112170 112170 1 LLEPFEVR TVLAASCARHRRSLRLLEPFEVRTRLLGWD RHRRSLRLLEPFEVRTRLLGWDDRAFYLEA R L L V R T 0 1 0 0 0 0 2 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 8 0 1001.5546 Q8WUY1 Q8WUY1 113 120 THEM6 Protein THEM6 yes yes 2 0.0074447 67.032 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.86305 0.84178 17.555 5 Median 0.86305 0.84178 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91042 0.91532 25.263 2 0 Median 0.85372 0.72951 NaN 1 0 Median 0.98535 1.011 NaN 1 0 Median NaN NaN NaN 0 0 Median 14145000 7302600 6842500 8556300 4523900 4032400 0 0 0 4072700 2114700 1958000 339050 178280 160780 1177100 485760 691310 0 0 0 21067 3499 21973 110888;110889;110890;110891;110892 112171;112172 112171 2 LLEPLVTQVTTLVNTSNK WDPKSLEIRTLTVERLLEPLVTQVTTLVNT PLVTQVTTLVNTSNKGPSGKKKGRSKKAHV R L L N K G 0 0 2 0 0 1 1 0 0 0 4 1 0 0 1 1 4 0 0 3 0 0 18 0 1969.1096 P26232;C9J144;C9IZ88 P26232 27 44 CTNNA2 Catenin alpha-2 yes no 2;3 7.4001E-14 118.37 By MS/MS By MS/MS By matching 1 1 1 0.99114 0.95083 7.4226 3 Median 0.99962 1.0028 NaN 1 1 Median 0.99114 0.86606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92496 0.95083 NaN 1 0 Median NaN NaN NaN 0 0 Median 11150000 5296500 5853300 1719700 720880 998850 8913000 4336500 4576500 0 0 0 0 0 0 517040 239080 277960 0 0 0 21068 2141 21974 110893;110894;110895 112173;112174;112175 112174 3 LLEPVDHGKIEYEPFRK DLQTALTGYQTKQRKLLEPVDHGKIEYEPF EPVDHGKIEYEPFRKNFYVEVPELAKMSQE K L L R K N 0 1 0 1 0 0 3 1 1 1 2 2 0 1 2 0 0 0 1 1 0 0 17 2 2069.0946 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 317 333 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3;4 2.1528E-06 83.386 By MS/MS 2 0.80622 0.91867 3.9655 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80622 0.91867 3.9655 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33237000 17697000 15540000 0 0 0 0 0 0 33237000 17697000 15540000 0 0 0 0 0 0 0 0 0 21069 3216 21975 110896;110897 112176;112177;112178;112179 112179 4 LLEPVLLLGK GRPLEMIEPRTLQYKLLEPVLLLGKERFAG TLQYKLLEPVLLLGKERFAGVDIRVRVKGG K L L G K E 0 0 0 0 0 0 1 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 10 0 1093.7111 P62249;M0R210;M0R3H0;M0R1M5;Q6IPX4;M0QX76 P62249 51 60 RPS16 40S ribosomal protein S16 yes no 2 0.00032996 124.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 8 4 4 2 3 6 1.0707 0.93809 13.321 27 Median 0.97268 0.92368 8.1436 8 0 Median 1.0434 0.90357 5.3275 4 0 Median 1.0822 1.0616 5.9188 4 0 Median 0.97366 0.80024 29.207 2 0 Median 1.1254 1.1543 24.199 3 0 Plateau 1.1423 0.94603 10.92 6 0 Median 545110000 269140000 275970000 446120000 221490000 224630000 37604000 18047000 19557000 46410000 22523000 23887000 3131800 1415100 1716700 1096800 592070 504710 10754000 5073000 5680700 21070 2574 21976;21977 110898;110899;110900;110901;110902;110903;110904;110905;110906;110907;110908;110909;110910;110911;110912;110913;110914;110915;110916;110917;110918;110919;110920;110921;110922;110923;110924 112180;112181;112182;112183;112184;112185;112186;112187;112188;112189;112190;112191;112192;112193 112182 14 LLEPVLLLGKER GRPLEMIEPRTLQYKLLEPVLLLGKERFAG QYKLLEPVLLLGKERFAGVDIRVRVKGGGH K L L E R F 0 1 0 0 0 0 2 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 12 1 1378.8548 P62249;M0R210;M0R3H0;M0R1M5;Q6IPX4;M0QX76 P62249 51 62 RPS16 40S ribosomal protein S16 yes no 3 0.003076 37.426 By MS/MS 1 1.0282 1.0203 NaN 1 Median 1.0282 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4363000 2119300 2243700 4363000 2119300 2243700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21071 2574 21978 110925 112194 112194 1 LLEPVPVSVTR LTGYCKAYFYGLRVKLLEPVPVSVTRCSFR LRVKLLEPVPVSVTRCSFRVNENTHNLQIH K L L T R C 0 1 0 0 0 0 1 0 0 0 2 0 0 0 2 1 1 0 0 3 0 0 11 0 1208.7129 J3KSH1;J3KS38;J3KRS2;J3QLK6;J3KRD0;Q86W34;J3KTM1 J3KSH1 126 136 AMZ2 Archaemetzincin-2 yes no 2 0.0018837 56.563 By MS/MS 1 0.79427 0.86473 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79427 0.86473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9600800 4563500 5037200 0 0 0 0 0 0 9600800 4563500 5037200 0 0 0 0 0 0 0 0 0 21072 1326 21979 110926 112195;112196 112196 2 LLEPVVSMSDMLR PGAIEMTWMDVPGDKLLEPVVSMSDMLRSL DKLLEPVVSMSDMLRSLSNTKPTVNEHDLL K L L L R S 0 1 0 1 0 0 1 0 0 0 3 0 2 0 1 2 0 0 0 2 0 0 13 0 1488.768 O75351 O75351 404 416 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 2 0.0014451 63.283 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 0.93581 0.85004 9.5159 6 Median 0.9008 0.89829 NaN 1 0 Median 0.9766 0.84232 NaN 1 0 Median 0.79335 0.78192 3.3128 2 2 Median 0.97218 0.85783 NaN 1 0 Median 0.99694 1.0033 NaN 1 1 Median NaN NaN NaN 0 0 Median 8120900 4156300 3964600 2168800 1036800 1132000 2117100 1069200 1047900 1966200 1104100 862110 154840 85047 69789 1714000 861120 852860 0 0 0 21073 1661 21980 110927;110928;110929;110930;110931;110932 112197;112198;112199;112200;112201;112202 112197 6 LLEQAGSLK QQIRNALENIRKEMKLLEQAGSLKGSLSVE IRKEMKLLEQAGSLKGSLSVEEQLSLISGC K L L L K G 1 0 0 0 0 1 1 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 957.5495 A0A2R8YFQ7;A0A2R8YCZ4;A0A2R8Y4K2;Q9Y2S2;A0A2R8Y7B4;A0A2R8Y5S5 A0A2R8YFQ7 55 63 CRYL1 Lambda-crystallin homolog yes no 2 0.0070414 52.716 By MS/MS 1 0.76622 0.74623 NaN 1 Median 0.76622 0.74623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2779700 1559300 1220400 2779700 1559300 1220400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21074 364 21981 110933 112203 112203 1 LLEQALVIEEQLRR NFLEIKNKFLARRFKLLEQALVIEEQLRRA KLLEQALVIEEQLRRAAYLNMSEDPSHPSM K L L R R A 1 2 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 14 1 1708.9836 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9;H7C0J3;H7C3H7;I3L229;Q8TDI0;Q12873 Q14839 1788 1801 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2;3 9.1494E-07 120.09 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.052 1.2467 23.538 7 Median NaN NaN NaN 0 0 Median 1.428 1.3384 NaN 1 0 Median 1.0355 1.3081 6.7931 2 0 Median NaN NaN NaN 0 0 Median 1.0333 1.1091 0.80763 2 0 Median 1.048 0.92766 42.171 2 0 Median 18473000 8686000 9786900 0 0 0 1085100 492800 592290 13187000 6510600 6676000 0 0 0 2926900 1054900 1872000 1274300 627710 646600 21075 246;3471;2766 21982 110934;110935;110936;110937;110938;110939;110940 112204;112205;112206;112207;112208 112207 5 LLEQGLR RLLRASGRTPEAVQKLLEQGLRHSQDLAFL RTPEAVQKLLEQGLRHSQDLAFLSMLNDIA K L L L R H 0 1 0 0 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 827.4865 P49327;A0A0U1RQF0 P49327 437 443 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00097657 133.99 By MS/MS By MS/MS 2 2 1.285 1.1128 10.635 4 Median 1.086 1.0554 3.8908 2 0 Median 1.4896 1.2255 10.052 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96472000 39417000 57055000 17795000 8207000 9587700 78678000 31210000 47467000 0 0 0 0 0 0 0 0 0 0 0 0 21076 2377 21983 110941;110942;110943;110944 112209;112210;112211;112212;112213;112214;112215;112216 112212 8 LLEQTQIIGEQNAR KVQEQQKQLQDQDQKLLEQTQIIGEQNARL KLLEQTQIIGEQNARLAELERKLREVMESA K L L A R L 1 1 1 0 0 3 2 1 0 2 2 0 0 0 0 0 1 0 0 0 0 0 14 0 1611.858 Q9NVF7 Q9NVF7 303 316 FBXO28 F-box only protein 28 yes yes 2 3.1995E-11 126.67 By MS/MS By MS/MS 3 1 1.2355 1.3264 24.165 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1026 1.1524 28.204 2 2 Median NaN NaN NaN 0 0 Median 0.90292 0.9098 NaN 1 1 Median NaN NaN NaN 0 0 Median 17780000 8290900 9489300 0 0 0 0 0 0 14739000 6559200 8180000 0 0 0 3041000 1731700 1309300 0 0 0 21077 4128 21984 110945;110946;110947;110948 112217;112218;112219;112220 112218 4 LLEQWEK KKKDIRDYNDADMARLLEQWEKDDDIEEGD YNDADMARLLEQWEKDDDIEEGDLPEHKRP R L L E K D 0 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 7 0 944.49673 Q14696 Q14696 66 72 MESDC2 LDLR chaperone MESD yes yes 2 0.062393 37.021 By matching By matching By MS/MS By matching 1 1 1 1 1.1547 1.0427 24.27 4 Median 1.2191 1.163 NaN 1 0 Median 1.0937 0.9349 NaN 1 0 Median 1.2541 1.2046 NaN 1 0 Median 0.86217 0.71138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5979400 2836000 3143400 2124000 959930 1164100 675500 286230 389270 2368100 1194400 1173800 811720 395440 416290 0 0 0 0 0 0 21078 2895 21985 110949;110950;110951;110952 112221 112221 1 LLEQYKEESK DEITYVELQKEEAQKLLEQYKEESKKALPP EEAQKLLEQYKEESKKALPPEKKQNTGSKK K L L S K K 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1265.6503 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839 665 674 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 1.3573E-30 214.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 7 7 9 10 1.1348 1.1028 14.147 39 Median 0.84223 0.88445 12.273 2 0 Median 1.414 1.3071 13.704 5 1 Median 1.012 1.1314 10.028 7 1 Median 1.2911 1.232 7.8236 6 0 Median 0.9861 1.0528 18.179 9 0 Median 1.1905 1.0427 5.5351 10 0 Median 335040000 156740000 178300000 14456000 7357000 7098600 62025000 26656000 35369000 31842000 15325000 16517000 27542000 12399000 15143000 138430000 67023000 71407000 60746000 27980000 32767000 21079 2680 21986 110953;110954;110955;110956;110957;110958;110959;110960;110961;110962;110963;110964;110965;110966;110967;110968;110969;110970;110971;110972;110973;110974;110975;110976;110977;110978;110979;110980;110981;110982;110983;110984;110985;110986;110987;110988;110989;110990;110991;110992 112222;112223;112224;112225;112226;112227;112228;112229;112230;112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241;112242;112243;112244;112245;112246;112247;112248;112249;112250;112251;112252;112253;112254;112255;112256;112257;112258;112259;112260;112261;112262;112263;112264;112265;112266;112267;112268 112245 47 LLEQYKEESKK DEITYVELQKEEAQKLLEQYKEESKKALPP EAQKLLEQYKEESKKALPPEKKQNTGSKKS K L L K K A 0 0 0 0 0 1 3 0 0 0 2 3 0 0 0 1 0 0 1 0 0 0 11 2 1393.7453 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQD4 Q00839 665 675 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 9.3483E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 9 6 10 8 1.061 1.1507 18.813 48 Median 0.95077 0.99665 13.181 7 0 Median 1.2653 1.2171 33.37 8 0 Median 0.98553 1.2022 8.8622 9 0 Median 1.3526 1.2922 13.975 6 0 Median 0.97516 1.1073 15.704 10 0 Median 1.1881 1.1602 7.3454 8 0 Median 367740000 171760000 195980000 14367000 7326500 7040400 75612000 33277000 42335000 36175000 17446000 18729000 20362000 9379800 10982000 164400000 79460000 84941000 56823000 24871000 31952000 21080 2680 21987 110993;110994;110995;110996;110997;110998;110999;111000;111001;111002;111003;111004;111005;111006;111007;111008;111009;111010;111011;111012;111013;111014;111015;111016;111017;111018;111019;111020;111021;111022;111023;111024;111025;111026;111027;111028;111029;111030;111031;111032;111033;111034;111035;111036;111037;111038;111039;111040 112269;112270;112271;112272;112273;112274;112275;112276;112277;112278;112279;112280;112281;112282;112283;112284;112285;112286;112287;112288;112289;112290;112291;112292;112293;112294;112295;112296;112297;112298;112299;112300;112301;112302;112303;112304;112305;112306;112307;112308;112309;112310;112311;112312;112313;112314;112315;112316;112317 112286 49 LLESDYFR IDRFNNYRLFPRLQKLLESDYFRYYKVNLK LFPRLQKLLESDYFRYYKVNLKRPCPFWND K L L F R Y 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 8 0 1041.5131 Q96HE7;G3V3E6;G3V503 Q96HE7 68 75 ERO1L ERO1-like protein alpha yes no 2 0.0039759 84.244 By MS/MS By MS/MS 1 1 1.1335 1.0226 3.2672 2 Median 1.0827 1.0465 NaN 1 0 Median 1.1867 0.99928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16301000 7150900 9150200 7750900 3583100 4167800 8550200 3567800 4982400 0 0 0 0 0 0 0 0 0 0 0 0 21081 3666 21988 111041;111042 112318;112319 112318 2 LLESEAVNENLRK MIHSYIKEIEDLRAKLLESEAVNENLRKNL AKLLESEAVNENLRKNLTRATARAPYFSGS K L L R K N 1 1 2 0 0 0 3 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 13 1 1513.81 A0A1B0GV47;Q7Z4S6 A0A1B0GV47 484 496 KIF21A Kinesin-like protein KIF21A yes no 3 0.0025491 51.875 By MS/MS 1 0.66934 0.67834 NaN 1 Median 0.66934 0.67834 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3529200 2176700 1352500 3529200 2176700 1352500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21082 325 21989 111043 112320 112320 1 LLESLDQLELR GRFCRSSSMADRSSRLLESLDQLELRVEAL RSSRLLESLDQLELRVEALREAATAVEQEK R L L L R V 0 1 0 1 0 1 2 0 0 0 5 0 0 0 0 1 0 0 0 0 0 0 11 0 1327.7347 O95816 O95816 28 38 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.00011409 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.0214 0.98653 17.209 7 Median 1.2624 1.1963 NaN 1 0 Median 0.98157 0.83039 NaN 1 0 Median 1.1778 1.1156 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85009 0.87431 17.078 2 0 Median 1.1803 0.93346 19.364 2 0 Median 129130000 63704000 65429000 9311600 3643300 5668300 22197000 11173000 11024000 2581200 1075300 1505900 0 0 0 9077500 5021700 4055800 85966000 42791000 43175000 21083 1795 21990 111044;111045;111046;111047;111048;111049;111050 112321;112322;112323;112324;112325;112326;112327;112328;112329;112330;112331 112326 11 LLESLQENHFQEDEQFLGAVMPR LKGTGCKVPQDVLQKLLESLQENHFQEDEQ HFQEDEQFLGAVMPRLGIGMDTCVIPLRHG K L L P R L 1 1 1 1 0 3 4 1 1 0 4 0 1 2 1 1 0 0 0 1 0 0 23 0 2729.3119 P49903;Q5T5U6 P49903 41 63 SEPHS1 Selenide, water dikinase 1 yes no 3 1.4742E-08 63.69 By MS/MS 1 0.9256 0.79395 NaN 1 Median NaN NaN NaN 0 0 Median 0.9256 0.79395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199900 737550 462370 0 0 0 1199900 737550 462370 0 0 0 0 0 0 0 0 0 0 0 0 21084 2404 21991 111051 112332 112332 1 LLESPGVEAGEGEAEKEEAGAQGR EAQTQKPEPPESAEKLLESPGVEAGEGEAE GEGEAEKEEAGAQGRPLRALQNCCSVPSPL K L L G R P 4 1 0 0 0 1 7 5 0 0 2 1 0 0 1 1 0 0 0 1 0 0 24 1 2412.1405 A0A0G2JHC2;Q6NYC8 A0A0G2JHC2 365 388 PPP1R18 Phostensin yes no 3 4.5546E-05 34.155 By MS/MS By matching 1 1 0.73094 0.76321 13.704 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60975 0.69272 NaN 1 0 Median 0.87621 0.84086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4032100 2070100 1962000 0 0 0 0 0 0 3358100 1706700 1651400 673990 363410 310590 0 0 0 0 0 0 21085 275 21992 111052;111053 112333 112333 1 LLESSLSSSEGEEPVEYK PTQCTPIEFDSKGSRLLESSLSSSEGEEPV SSLSSSEGEEPVEYKSLQWFGATVRAHGSS R L L Y K S 0 0 0 0 0 0 5 1 0 0 3 1 0 0 1 5 0 0 1 1 0 0 18 0 1981.9368 P08648 P08648 120 137 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain yes yes 2 3.7433E-06 78.692 By MS/MS By matching 1 1 0.93986 0.87077 20.92 2 Median 1.0361 1.0096 NaN 1 0 Median 0.85253 0.75103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6125600 3122200 3003400 5511300 2799600 2711600 614280 322510 291770 0 0 0 0 0 0 0 0 0 0 0 0 21086 1906 21993 111054;111055 112334;112335 112334 2 LLETESFQMNR SIRGDFRTTVEYLIKLLETESFQMNRIDTG YLIKLLETESFQMNRIDTGWLDRLIAEKVQ K L L N R I 0 1 1 0 0 1 2 0 0 0 2 0 1 1 0 1 1 0 0 0 0 0 11 0 1366.6551 Q13085 Q13085 597 607 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.00012997 141.48 By MS/MS By MS/MS By matching 2 2 1 0.86103 0.81189 41.14 5 Median 0.77353 0.74245 12.644 2 0 Median 0.80597 0.68278 78.773 2 0 Median 0.86368 0.8736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33771000 17606000 16165000 20941000 11151000 9790400 10320000 5529800 4790500 2509300 925030 1584300 0 0 0 0 0 0 0 0 0 21087 2784 21994 111056;111057;111058;111059;111060 112336;112337;112338;112339 112337 4 LLETGLVNMHR AYGNNKEPSLFAVAKLLETGLVNMHRIEIL AVAKLLETGLVNMHRIEILWRPLTGHLLEK K L L H R I 0 1 1 0 0 0 1 1 1 0 3 0 1 0 0 0 1 0 0 1 0 0 11 0 1281.6863 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 798 808 MON2 Protein MON2 homolog yes no 3 5.5189E-05 96.89 By MS/MS By MS/MS By matching 1 2 1 1.1889 1.0835 11.521 4 Median 1.1603 1.0915 NaN 1 0 Median 1.3159 1.1347 7.557 2 0 Median 0.85338 0.90787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12434000 5315400 7118200 8833300 3630600 5202700 2267400 917690 1349700 1332900 767060 565840 0 0 0 0 0 0 0 0 0 21088 353 21995 111061;111062;111063;111064 112340;112341;112342;112343 112340 4 LLETHIHNQGLAAIEK NLVSRIQDGLGELKKLLETHIHNQGLAAIE LETHIHNQGLAAIEKCGEAALNDPKMYVQT K L L E K C 2 0 1 0 0 1 2 1 2 2 3 1 0 0 0 0 1 0 0 0 0 0 16 0 1785.9737 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 315 330 CUL1 Cullin-1 yes no 3;4 3.4864E-05 60.918 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 1 1.0833 1.123 10.306 9 Median 1.0905 1.0271 0.74004 2 0 Median 1.3713 1.2242 18.792 2 0 Median 1.0754 1.1323 2.0924 4 0 Median 1.1373 0.98548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105420000 48080000 57338000 10840000 4882600 5957500 2712100 1066900 1645200 87487000 40188000 47299000 4378200 1942800 2435400 0 0 0 0 0 0 21089 256 21996 111065;111066;111067;111068;111069;111070;111071;111072;111073 112344;112345;112346;112347;112348;112349;112350;112351;112352;112353 112351 10 LLETIDQLYLEYAK ALTQKRREALERTEKLLETIDQLYLEYAKR KLLETIDQLYLEYAKRAAPFNNWMEGAMED K L L A K R 1 0 0 1 0 1 2 0 0 1 4 1 0 0 0 0 1 0 2 0 0 0 14 0 1710.908 P12814;H9KV75;H7C5W8;H0YJ11 P12814 503 516 ACTN1 Alpha-actinin-1 yes no 2 9.1835E-06 125.22 By matching By MS/MS 1 2 1.0781 0.98031 14.159 3 Median 1.1729 1.16 NaN 1 0 Median 1.039 0.92643 7.9952 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16847000 8067800 8779100 3127800 1478700 1649100 13719000 6589100 7130000 0 0 0 0 0 0 0 0 0 0 0 0 21090 1983 21997 111074;111075;111076 112354 112354 1 LLETLFVHR VHLACICHSFHYIKRLLETLFVHRFSHGTM FHYIKRLLETLFVHRFSHGTMPLRNIFKNC R L L H R F 0 1 0 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 1 0 0 9 0 1126.6499 Q9NZ01;M0R2N5 Q9NZ01 142 150 TECR Very-long-chain enoyl-CoA reductase yes no 2 0.00078048 98.299 By MS/MS By MS/MS By matching 2 2 1 1.1919 1.0421 15.202 5 Median 1.127 1.1165 9.7572 2 0 Median 1.3514 1.1047 16.893 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0545 0.85593 NaN 1 0 Median 42828000 20532000 22296000 14675000 7429200 7246100 26382000 12242000 14140000 0 0 0 0 0 0 0 0 0 1770900 861040 909880 21091 4181 21998 111077;111078;111079;111080;111081 112355;112356;112357;112358 112357 4 LLETQDGAEK QQRRLLGRHEQVVERLLETQDGAEKQLREI QVVERLLETQDGAEKQLREILTMEKEVAQS R L L E K Q 1 0 0 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1102.5506 Q8NBT2 Q8NBT2 41 50 SPC24 Kinetochore protein Spc24 no no 2 0.042746 30.254 By MS/MS By MS/MS 1 1 1.0734 1.0307 6.9313 2 Median 1.1196 1.0825 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0291 0.98139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4723800 2447900 2275900 1487900 867860 620030 0 0 0 3235900 1580000 1655900 0 0 0 0 0 0 0 0 0 21092 3411 21999 111082;111083 112359;112360;112361 112359 3 LLETTDRPDGHQNNLR ATYCLSSSFELIVQKLLETTDRPDGHQNNL LETTDRPDGHQNNLRSSAYESLMEIVKNSA K L L L R S 0 2 2 2 0 1 1 1 1 0 3 0 0 0 1 0 2 0 0 0 0 0 16 1 1877.9344 Q14974;J3KTM9 Q14974 510 525 KPNB1 Importin subunit beta-1 yes no 2;3;4 2.0155E-05 77.754 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 5 7 4 3 0.99299 0.98704 13.466 28 Median 0.86226 0.88407 23.931 5 0 Median 1.0751 1.0636 10.181 4 0 Median 0.88142 0.98543 5.3346 5 0 Median 1.0783 0.95548 4.4898 7 0 Median 0.96269 1.1134 11.92 4 0 Linear 1.1187 1.0113 13.475 3 1 Median 307400000 148940000 158460000 42554000 22101000 20452000 75802000 35128000 40674000 95587000 47935000 47652000 63940000 29873000 34067000 22440000 10640000 11800000 7077400 3267400 3810100 21093 2904 22000 111084;111085;111086;111087;111088;111089;111090;111091;111092;111093;111094;111095;111096;111097;111098;111099;111100;111101;111102;111103;111104;111105;111106;111107;111108;111109;111110;111111;111112 112362;112363;112364;112365;112366;112367;112368;112369;112370;112371;112372;112373;112374;112375;112376;112377;112378;112379;112380;112381;112382;112383;112384;112385;112386;112387;112388;112389;112390;112391;112392;112393;112394;112395;112396;112397;112398;112399;112400;112401;112402;112403;112404;112405;112406;112407 112401 46 LLEVDLK VREKDIQRFFSGYGRLLEVDLKNGYGFVEF RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD R L L L K N 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 28 34 SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.014432 74.415 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 3 0.72643 0.70014 122.34 9 Median 1.0566 0.99673 NaN 1 0 Median 0.45712 0.38963 184.33 3 0 Median 0.72643 0.70014 NaN 1 0 Median 0.15872 0.14319 NaN 1 1 Median 0.89414 0.93891 25.564 3 1 Median NaN NaN NaN 0 0 Median 90289000 62450000 27839000 5213300 2634200 2579000 15372000 9709800 5662300 15114000 10120000 4994600 36631000 30089000 6542000 17959000 9897800 8060800 0 0 0 21094 485 22001 111113;111114;111115;111116;111117;111118;111119;111120;111121 112408;112409;112410;112411;112412;112413;112414 112408 7 LLEVEHPAAK IGDVTITNDGATILKLLEVEHPAAKVLCEL ATILKLLEVEHPAAKVLCELADLQDKEVGD K L L A K V 2 0 0 0 0 0 2 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1105.6132 P17987;E7ERF2;F5H136;F5GZI8;F5H676;F5H726 P17987 64 73 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00039551 88.819 By MS/MS By MS/MS 2 2 0.97584 0.88666 16.389 4 Median 0.99544 0.95869 0.039244 2 0 Median 0.87631 0.7463 13.364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62604000 31480000 31124000 20197000 9717600 10480000 42407000 21762000 20645000 0 0 0 0 0 0 0 0 0 0 0 0 21095 2051 22002 111122;111123;111124;111125 112415;112416;112417;112418;112419;112420 112420 6 LLEVLSGEILPKPTK GDLYSDLRDGRNLLRLLEVLSGEILPKPTK LLEVLSGEILPKPTKGRMRIHCLENVDKAL R L L T K G 0 0 0 0 0 0 2 1 0 1 4 2 0 0 2 1 1 0 0 1 0 0 15 1 1635.9811 O15020;A4QPE4;E9PJZ2 O15020 94 108 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 3 0.0002733 45.434 By matching By MS/MS By MS/MS 1 1 1 1.0079 1.0224 16.271 3 Median 1.0079 1.0493 NaN 1 0 Median 1.076 1.0224 NaN 1 0 Median 0.68232 0.78211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3951400 2048100 1903300 719620 312940 406670 1536500 745980 790550 1695300 989210 706050 0 0 0 0 0 0 0 0 0 21096 1512 22003 111126;111127;111128 112421;112422 112422 2 LLEVLSGER TDLYTDLRDGRMLIKLLEVLSGERLPKPTK GRMLIKLLEVLSGERLPKPTKGRMRIHCLE K L L E R L 0 1 0 0 0 0 2 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1014.571 Q01082;A0A087WUZ3;F8W6C1 Q01082 91 99 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00050786 119.27 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 0.91426 0.84018 17.281 10 Median NaN NaN NaN 0 0 Median 1.0295 0.88137 NaN 1 0 Median 0.78714 0.79827 23.696 2 0 Median 0.79477 0.67726 36.819 2 0 Median 0.83893 0.84018 1.6867 2 1 Median 0.98934 0.80026 4.9896 3 0 Median 131050000 67501000 63553000 0 0 0 2147100 948660 1198400 96654000 49981000 46673000 12147000 6146700 6000400 14006000 7222600 6783200 6099800 3202000 2897700 21097 2681 22004 111129;111130;111131;111132;111133;111134;111135;111136;111137;111138 112423;112424;112425;112426;112427;112428;112429;112430 112424 8 LLEVNQQSLLGLTHGEAVQLLR TGAAGRDGRLRVGLRLLEVNQQSLLGLTHG SLLGLTHGEAVQLLRSVGDTLTVLVCDGFE R L L L R S 1 1 1 0 0 3 2 2 1 0 7 0 0 0 0 1 1 0 0 2 0 0 22 0 2430.3595 A0A0G2JNZ2;A0A0G2JPP5;Q14160;A0A0G2JMS7;H0YCG0 A0A0G2JNZ2 1157 1178 SCRIB Protein scribble homolog yes no 3 3.0009E-12 64.723 By matching By MS/MS 1 4 1.2735 1.1327 16.067 5 Median 1.2334 1.2216 NaN 1 0 Median 1.3038 1.1169 17.502 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32728000 13483000 19245000 370210 157740 212470 32358000 13325000 19033000 0 0 0 0 0 0 0 0 0 0 0 0 21098 283 22005 111139;111140;111141;111142;111143 112431;112432;112433 112433 3 LLEVQGSR MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL LDSIIGRLLEVQGSRPGKNVQLTENEIRGL R L L S R P 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 8 0 900.50288 P62136;E9PMD7 P62136 16 23 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 0.030308 68.915 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21099 2569 22006 111144 112434 112434 1 LLEVQGSRPGK MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL IIGRLLEVQGSRPGKNVQLTENEIRGLCLK R L L G K N 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1182.6721 P62136;E9PMD7 P62136 16 26 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2;3 0.00066541 111.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 2 0.95618 0.9303 23.897 9 Median 0.89178 0.92017 4.3031 2 0 Median 1.2721 1.1636 43.266 2 0 Median 0.7561 0.79775 22.526 2 0 Median 0.97956 0.89096 6.1108 2 0 Median 1.1269 1.2166 NaN 1 0 Median NaN NaN NaN 0 0 Median 56148000 15298000 40850000 7729600 2539800 5189800 10235000 3060900 7173900 17043000 4528300 12514000 16434000 4015100 12419000 4706500 1153800 3552700 0 0 0 21100 2569 22007 111145;111146;111147;111148;111149;111150;111151;111152;111153;111154;111155;111156;111157;111158 112435;112436;112437;112438;112439;112440;112441;112442;112443;112444;112445;112446;112447;112448;112449;112450;112451 112444 17 LLEVQSQVEELQK RKNELETENRLVNQRLLEVQSQVEELQKSL QRLLEVQSQVEELQKSLQDQGSKAEDSVLL R L L Q K S 0 0 0 0 0 3 3 0 0 0 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1541.8301 Q86VS8 Q86VS8 517 529 HOOK3 Protein Hook homolog 3 yes yes 2 0.0033338 60.563 By MS/MS 1 0.10096 0.08867 NaN 1 Median 0.10096 0.08867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40355000 38424000 1931100 40355000 38424000 1931100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21101 3289 22008 111159 112452 112452 1 LLEVQVATGGVIDPQHHHR QAMQKQLIEKAEALRLLEVQVATGGVIDPQ QVATGGVIDPQHHHRLPLETAYRRGCLHKD R L L H R L 1 1 0 1 0 2 1 2 3 1 2 0 0 0 1 0 1 0 0 3 0 0 19 0 2105.113 P58107;A0A075B730 P58107 2006 2024 EPPK1 Epiplakin yes no 3;4 6.1437E-06 49.537 By MS/MS By MS/MS 3 1 1.2742 1.1239 14.123 4 Median 1.151 1.1187 17.099 3 0 Median 1.4106 1.1291 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65776000 29831000 35945000 46868000 22508000 24361000 18907000 7323200 11584000 0 0 0 0 0 0 0 0 0 0 0 0 21102 2520 22009 111160;111161;111162;111163 112453;112454;112455;112456 112453 4 LLEVTNTIR CTKHHSIKQLQLSPRLLEVTNTIRVENLPP LQLSPRLLEVTNTIRVENLPPGADDYSLKL R L L I R V 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 2 0 0 1 0 0 9 0 1057.6132 Q460N5;H7C5R8;H7C4Y3;A0A3B3ITD5 Q460N5 223 231 PARP14 Poly [ADP-ribose] polymerase 14 yes no 2 0.0014358 81.548 By MS/MS 1 1.0609 1.1688 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0609 1.1688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5193100 2498900 2694100 0 0 0 0 0 0 5193100 2498900 2694100 0 0 0 0 0 0 0 0 0 21103 3017 22010 111164 112457 112457 1 LLEVYDQLFK FVIQTMNEIGVPLPRLLEVYDQLFKSRDPF VPLPRLLEVYDQLFKSRDPFWNRMKKPLHL R L L F K S 0 0 0 1 0 1 1 0 0 0 3 1 0 1 0 0 0 0 1 1 0 0 10 0 1266.686 O75694;E9PF10 O75694 1299 1308 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.012703 40.987 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 2 5 1 1 4 1.2668 1.1204 14.971 14 Median 1.1295 1.1141 NaN 1 0 Median 1.042 0.89952 23.782 2 0 Median 1.1097 1.1926 10.87 5 0 Median 1.3564 1.136 NaN 1 0 Median 0.88289 0.85357 NaN 1 0 Median 1.3639 1.1204 3.4027 4 0 Median 45743000 20648000 25095000 3500200 1604900 1895200 15540000 6855800 8683900 15950000 7518000 8431700 1013900 444410 569540 551470 295560 255920 9188300 3929200 5259100 21104 1692 22011 111165;111166;111167;111168;111169;111170;111171;111172;111173;111174;111175;111176;111177;111178 112458;112459;112460;112461 112458 4 LLEYDTVTR RDYLLLVMEGTDDGRLLEYDTVTREVKVLL GTDDGRLLEYDTVTREVKVLLDQLRFPNGV R L L T R E 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 9 0 1108.5764 Q9HDC9;H0Y512 Q9HDC9 239 247 APMAP Adipocyte plasma membrane-associated protein yes no 2 0.00091857 90.657 By MS/MS By MS/MS 2 2 1.3864 1.2392 9.8406 4 Median 1.2025 1.1653 9.2667 2 1 Median 1.5249 1.309 8.3311 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51616000 22170000 29445000 26292000 11998000 14294000 25324000 10173000 15151000 0 0 0 0 0 0 0 0 0 0 0 0 21105 4039 22012 111179;111180;111181;111182 112462;112463;112464;112465;112466 112462 5 LLEYMPLPPEEAENGENAGNEEPK DMEKLETNLRKLFDKLLEYMPLPPEEAENG EEAENGENAGNEEPKLQFSYVECLLYSFHQ K L L P K L 2 0 3 0 0 0 7 2 0 0 3 1 1 0 4 0 0 0 1 0 0 0 24 0 2669.2167 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 314 337 API5 Apoptosis inhibitor 5 yes no 2 0.013243 30.961 By MS/MS 1 0.46557 0.47952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46557 0.47952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2178100 1594400 583690 0 0 0 0 0 0 2178100 1594400 583690 0 0 0 0 0 0 0 0 0 21106 1103 22013 111183 112467 112467 1 LLFDETQGKPAVAVIDNGR SATSRNIGVRRIQIKLLFDETQGKPAVAVI ETQGKPAVAVIDNGRGMTSKQLNNWAVYRL K L L G R G 2 1 1 2 0 1 1 2 0 1 2 1 0 1 1 0 1 0 0 2 0 0 19 1 2042.0797 A6NHR9 A6NHR9 169 187 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 3.6171E-08 69.737 By matching By MS/MS By MS/MS 1 3 1 0.77814 0.90029 16.221 5 Median NaN NaN NaN 0 0 Median 1.2501 1.1946 NaN 1 0 Median 0.7515 0.88666 6.6227 3 1 Median 1.112 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43772000 25036000 18735000 0 0 0 1572200 614680 957490 41145000 23933000 17212000 1054100 488320 565770 0 0 0 0 0 0 21107 518 22014 111184;111185;111186;111187;111188 112468;112469;112470;112471;112472 112468 5 LLFDQAYQMR DCLSKWVGESERQLRLLFDQAYQMRPSIIF ERQLRLLFDQAYQMRPSIIFFDEIDGLAPV R L L M R P 1 1 0 1 0 2 0 0 0 0 2 0 1 1 0 0 0 0 1 0 0 0 10 0 1283.6332 Q6PL18 Q6PL18 515 524 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.00033566 109.86 By matching By MS/MS By matching 1 3 1 0.93115 0.93526 52.344 5 Median 0.93856 0.93526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.938 0.9693 60.214 3 1 Plateau 0.45856 0.40247 NaN 1 0 Median 14187000 7330700 6856300 573210 282530 290690 0 0 0 0 0 0 0 0 0 13514000 7005500 6508400 99899 42654 57245 21108 3177 22015 111189;111190;111191;111192;111193 112473;112474;112475 112474 3 LLFEGAGSNPGDK YEQVKNVADYYPEYKLLFEGAGSNPGDKTL YKLLFEGAGSNPGDKTLEDRFFEHEVKLNK K L L D K T 1 0 1 1 0 0 1 3 0 0 2 1 0 1 1 1 0 0 0 0 0 0 13 0 1303.6408 F5GYQ1;P61421;J3QL14;R4GN72 F5GYQ1 317 329 ATP6V0D1 V-type proton ATPase subunit d 1 yes no 2 4.4657E-05 89.548 By MS/MS By MS/MS 2 2 1.1703 1.095 8.2609 4 Median 1.1703 1.095 2.5603 2 0 Median 1.2032 1.0259 12.476 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34641000 14851000 19789000 22173000 9420300 12753000 12467000 5431100 7036000 0 0 0 0 0 0 0 0 0 0 0 0 21109 1012 22016 111194;111195;111196;111197 112476;112477;112478;112479 112477 4 LLFEVFDENR WNEEFYFRVNPSNHRLLFEVFDENRLTRDD PSNHRLLFEVFDENRLTRDDFLGQVDVPLS R L L N R L 0 1 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 10 0 1280.6401 Q96PU5;H0Y8H4 Q96PU5 89 98 NEDD4L;NEDD4 E3 ubiquitin-protein ligase NEDD4-like yes no 2 0.0075902 47.603 By MS/MS 1 1.8714 1.892 NaN 1 Median 1.8714 1.892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 980980 360170 620810 980980 360170 620810 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21110 3714 22017 111198 112480 112480 1 LLFGDLLR LFRLLGLPRGTSLEKLLFGDLLRVADTIVA RGTSLEKLLFGDLLRVADTIVAKAADLKDL K L L L R V 0 1 0 1 0 0 0 1 0 0 4 0 0 1 0 0 0 0 0 0 0 0 8 0 945.56475 Q8NCM8;A0A3B3ISP9 Q8NCM8 1228 1235 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.011909 56.011 By MS/MS By matching By matching By matching 2 1 1 1 0.89843 0.9059 21.252 5 Median 0.85348 0.85094 6.397 2 0 Median 1.4511 1.2221 NaN 1 0 Median 0.81453 0.9059 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3262 1.3151 NaN 1 0 Median NaN NaN NaN 0 0 Median 7580000 3983600 3596400 5068700 2905400 2163300 2000200 846700 1153500 384280 187230 197050 0 0 0 126800 44233 82566 0 0 0 21111 3418 22018 111199;111200;111201;111202;111203 112481;112482 112482 2 LLFGPTVR AHTRYFRGGMLTNARLLFGPTVRLPDLIIF GMLTNARLLFGPTVRLPDLIIFLHTLNNIF R L L V R L 0 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 1 0 0 1 0 0 8 0 901.53854 Q9Y399 Q9Y399 181 188 MRPS2 28S ribosomal protein S2, mitochondrial no no 2 0.0048619 79.116 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 1.2007 0.98514 15.521 9 Median 0.91481 0.86115 4.1433 2 1 Median 1.3217 1.1371 8.0753 2 0 Median 0.89952 0.86169 NaN 1 0 Median 1.2698 1.058 10.086 2 0 Median 1.257 1.3033 NaN 1 0 Median 1.2007 0.97313 NaN 1 0 Median 31037000 16302000 14735000 20988000 11374000 9613400 2504300 1040900 1463500 4752900 2658000 2095000 914460 417950 496510 1276300 566230 710090 601340 244700 356640 21112 4409 22019 111204;111205;111206;111207;111208;111209;111210;111211;111212 112483;112484;112485;112486;112487;112488 112484 6 LLFNAGNIANHFFTVPFLR EISLATAQKRSSDGRLLFNAGNIANHFFTV AGNIANHFFTVPFLRDVVNVYEPQLQHHVA R L L L R D 2 1 3 0 0 0 0 1 1 1 3 0 0 4 1 0 1 0 0 1 0 0 19 0 2190.1738 Q16222 Q16222 321 339 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes yes 3 0.0072518 23.329 By MS/MS By matching 1 2 1.0897 1.1044 20.11 3 Median 1.0897 1.1044 NaN 1 0 Median 1.1075 0.96049 26.055 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3452100 1577800 1874400 988240 438110 550130 2463900 1139700 1324200 0 0 0 0 0 0 0 0 0 0 0 0 21113 2981 22020 111213;111214;111215 112489 112489 1 LLFNDVQTLK GEVERDLDKADSMIRLLFNDVQTLKDGRHP DSMIRLLFNDVQTLKDGRHPQGEQMYRRVY R L L L K D 0 0 1 1 0 1 0 0 0 0 3 1 0 1 0 0 1 0 0 1 0 0 10 0 1189.6707 Q15149;H0YDN1;E9PMV1 Q15149 588 597 PLEC Plectin yes no 2 4.4862E-05 138.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 1.3819 1.2918 7.7069 7 Median 1.3971 1.3611 7.3924 2 0 Median 1.3819 1.2306 NaN 1 0 Median 1.1266 1.2005 NaN 1 0 Median 1.346 1.2984 NaN 1 0 Median 1.4036 1.4692 NaN 1 0 Median 1.4536 1.2456 NaN 1 0 Median 127710000 54727000 72978000 61386000 26204000 35182000 19416000 7873500 11542000 32391000 14927000 17465000 2377400 984240 1393100 10212000 3954600 6256900 1923600 784020 1139600 21114 2933 22021 111216;111217;111218;111219;111220;111221;111222 112490;112491;112492;112493;112494;112495;112496;112497 112491 8 LLFNMAGVTFR MSDKYHDSDEATAARLLFNMAGVTFRKFIP TAARLLFNMAGVTFRKFIPKCSKIVIDFDS R L L F R K 1 1 1 0 0 0 0 1 0 0 2 0 1 2 0 0 1 0 0 1 0 0 11 0 1267.6747 P32321;D6RBJ9 P32321 143 153 DCTD Deoxycytidylate deaminase yes no 2 0.001697 57.598 By matching By MS/MS By matching 1 1 1 0.81156 0.72738 24.069 3 Median 0.72642 0.72738 NaN 1 0 Median 1.3162 1.0942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81156 0.71543 NaN 1 0 Median 4416800 2181200 2235700 3013100 1606900 1406200 1267000 515380 751600 0 0 0 0 0 0 0 0 0 136720 58877 77841 21115 2217 22022 111223;111224;111225 112498;112499 112499 2 LLFPAVDDNLLK ASPRYIFTMLSTLARLLFPAVDDNLLKFLY LARLLFPAVDDNLLKFLYDDNQRVEPEWYI R L L L K F 1 0 1 2 0 0 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 12 0 1356.7653 Q02880;E9PCY5 Q02880 837 848 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.00062698 65.347 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 2 3 3 1.1175 0.93264 27.635 13 Median 1.8109 1.7565 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71703 0.76953 3.6492 4 0 Median 1.468 1.3033 11.594 2 0 Median 0.86494 0.8917 27.743 3 0 Median 1.187 1.0003 8.1715 3 0 Median 46272000 25159000 21112000 361970 136180 225790 0 0 0 22712000 13038000 9673800 828880 337740 491140 19863000 10372000 9491400 2505500 1275200 1230300 21116 2704 22023 111226;111227;111228;111229;111230;111231;111232;111233;111234;111235;111236;111237;111238 112500;112501;112502;112503;112504;112505;112506;112507;112508;112509 112501 10 LLFPPKDDHTLK ASPRYIFTMLSSLARLLFPPKDDHTLKFLY LARLLFPPKDDHTLKFLYDDNQRVEPEWYI R L L L K F 0 0 0 2 0 0 0 0 1 0 3 2 0 1 2 0 1 0 0 0 0 0 12 1 1422.7871 P11388 P11388 816 827 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0004768 78.903 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.88098 0.99575 18.676 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88098 1.0188 9.495 2 2 Median 1.1137 1.0408 NaN 1 1 Median 0.82807 0.89516 27.699 2 1 Median 0.81048 0.73328 NaN 1 0 Median 50859000 26512000 24346000 0 0 0 0 0 0 17362000 9696300 7665500 1124200 518740 605480 31363000 15826000 15537000 1010100 471240 538850 21117 1963 22024 111239;111240;111241;111242;111243;111244 112510;112511;112512;112513;112514 112513 5 LLFQLAQLHTLEK KAIQISQQTPYWHCRLLFQLAQLHTLEKDL CRLLFQLAQLHTLEKDLVSACDLLGVGAEY R L L E K D 1 0 0 0 0 2 1 0 1 0 5 1 0 1 0 0 1 0 0 0 0 0 13 0 1552.8977 Q9Y6X3;V9GYS3;V9GZ52 Q9Y6X3 147 159 MAU2 MAU2 chromatid cohesion factor homolog yes no 2;3 0.001078 72.006 By MS/MS By MS/MS 2 1 0.90824 0.87288 11.736 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98002 0.9484 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84172 0.80336 NaN 1 0 Median NaN NaN NaN 0 0 Median 35765000 17975000 17790000 0 0 0 0 0 0 24552000 11745000 12808000 0 0 0 11212000 6229800 4982400 0 0 0 21118 4499 22025 111245;111246;111247 112515;112516;112517 112516 3 LLFQNLWKPR HTDSIKMPGRLGPQRLLFQNLWKPRLNVP_ LGPQRLLFQNLWKPRLNVP___________ R L L P R L 0 1 1 0 0 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 0 0 10 1 1313.7608 O60573;B8ZZL3 O60573 232 241 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 2;3 0.0012923 77.058 By MS/MS By matching 2 1 1.1625 1.1023 14.344 3 Median 1.0169 1.0085 18.939 2 0 Median 1.182 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4964400 2396700 2567700 4557600 2231400 2326200 406820 165260 241560 0 0 0 0 0 0 0 0 0 0 0 0 21119 1622 22026 111248;111249;111250 112518;112519;112520;112521 112521 4 LLFSAVEWAR NNIMGIENICELAARLLFSAVEWARNIPFF ELAARLLFSAVEWARNIPFFPDLQITDQVS R L L A R N 2 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 10 0 1190.6448 P10589;F1DAL7;F1DAL9 P10589 226 235 NR2F1 COUP transcription factor 1 yes no 2 0.011836 42.109 By MS/MS By matching 1 1 1.3389 1.2583 46.019 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90184 0.90879 NaN 1 0 Median 1.9877 1.7422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3059300 1496100 1563200 0 0 0 0 0 0 2818700 1431700 1387000 240610 64420 176190 0 0 0 0 0 0 21120 1941 22027 111251;111252 112522;112523 112523 2 LLFSGYQHHLSVR MGASIHLVGDSVNHRLLFSGYQHHLSVREN HRLLFSGYQHHLSVRENPIIKNLKPETLVR R L L V R E 0 1 0 0 0 1 0 1 2 0 3 0 0 1 0 2 0 0 1 1 0 0 13 0 1555.8259 A0A0S2Z5D0;H3BUV4;A0A1B0GTU6;Q9NWW5 A0A0S2Z5D0 137 149 CLN6 Ceroid-lipofuscinosis neuronal protein 6 yes no 3 1.1553E-05 89.959 By MS/MS By MS/MS By matching 1 1 1 0.74843 0.69814 35.566 3 Median 0.54867 0.53277 NaN 1 0 Median 1.3468 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74843 0.69814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45103000 22480000 22623000 26622000 14865000 11757000 17678000 7130000 10548000 0 0 0 803740 485740 318010 0 0 0 0 0 0 21121 298 22028 111253;111254;111255 112524;112525;112526;112527 112526 4 LLFSHDLVSGR SGPSSDSGPEAGSQRLLFSHDLVSGRYRGS GSQRLLFSHDLVSGRYRGSVHFGLVRLIHG R L L G R Y 0 1 0 1 0 0 0 1 1 0 3 0 0 1 0 2 0 0 0 1 0 0 11 0 1242.6721 Q9C0C9 Q9C0C9 59 69 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 2;3 0.00015247 67.563 By MS/MS By MS/MS 3 2 1.4331 1.2972 8.3086 5 Median 1.4331 1.3451 9.7535 3 0 Plateau 1.5469 1.3059 7.9252 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24139000 9373900 14765000 21931000 8581800 13349000 2207400 792140 1415300 0 0 0 0 0 0 0 0 0 0 0 0 21122 3904 22029 111256;111257;111258;111259;111260 112528;112529;112530;112531;112532;112533;112534 112529 7 LLFSNTAAQK VKKHNGVGGSPPKSKLLFSNTAAQKLRGMD PPKSKLLFSNTAAQKLRGMDEVYNLFYVNN K L L Q K L 2 0 1 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1091.5975 Q96ST3 Q96ST3 866 875 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0011606 67.993 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.96081 0.8468 19.913 4 Median NaN NaN NaN 0 0 Median 1.2074 1.0388 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9592 0.86902 NaN 1 0 Median 0.60736 0.64137 NaN 1 0 Median 0.96242 0.82515 NaN 1 0 Median 8536500 4473100 4063400 0 0 0 3035600 1476200 1559500 0 0 0 1873300 893300 980030 2548400 1549900 998550 1079100 553730 525350 21123 3737 22030 111261;111262;111263;111264 112535;112536;112537 112535 3 LLFSTVEWAR GAVLGIDNVCELAARLLFSTVEWARHAPFF ELAARLLFSTVEWARHAPFFPELPVADQVA R L L A R H 1 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 1 1 0 1 0 0 10 0 1220.6554 P10588;M0R175 P10588 209 218 NR2F6 Nuclear receptor subfamily 2 group F member 6 yes no 2 0.0027284 59.245 By MS/MS By matching 1 1 1.1834 1.1351 8.7298 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98453 1.0672 NaN 1 0 Median 1.4224 1.2074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3376200 1741900 1634400 0 0 0 0 0 0 3247000 1684300 1562800 129220 57617 71605 0 0 0 0 0 0 21124 1940 22031 111265;111266 112538;112539 112539 2 LLFWGGSYGGAGQPQLISR HFALMQRDSWVDIFRLLFWGGSYGGAGQPQ GGSYGGAGQPQLISRNWFGLPGRLDAAMAG R L L S R N 1 1 0 0 0 2 0 5 0 1 3 0 0 1 1 2 0 1 1 0 0 0 19 0 2006.0374 CON__Q3ZBS7 CON__Q3ZBS7 323 341 yes yes 2;3 1.8092E-06 62.14 By MS/MS By MS/MS By MS/MS 1 1 2 0.079512 0.08425 40.163 4 Median 0.14268 0.1445 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.075668 0.079616 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.065707 0.069727 34.758 2 2 Median NaN NaN NaN 0 0 Median 8408000 7776500 631530 1749700 1604500 145180 0 0 0 1399800 1287500 112330 0 0 0 5258500 4884500 374010 0 0 0 + 21125 783 22032 111267;111268;111269;111270 112540;112541;112542;112543;112544 112541 5 LLGAALPLLTK LLKMQFWPASYLCFRLLGAALPLLTKEQLH LCFRLLGAALPLLTKEQLHLVMQGDVIRHY R L L T K E 2 0 0 0 0 0 0 1 0 0 5 1 0 0 1 0 1 0 0 0 0 0 11 0 1108.722 Q9BQG0;I3L1L3 Q9BQG0 308 318 MYBBP1A Myb-binding protein 1A yes no 2 0.00067555 64.841 By matching By MS/MS By matching By MS/MS By matching 2 4 2 3 4 0.98523 0.9374 22.125 15 Median NaN NaN NaN 0 0 Median 1.3114 1.1437 28.262 2 0 Median 0.95773 1.0241 12.593 4 0 Median 1.0577 0.92295 6.8402 2 0 Median 0.92189 0.94832 4.3132 3 0 Median 0.9735 0.83305 28.857 4 0 Median 32267000 15975000 16292000 0 0 0 5227800 2380400 2847400 10129000 5083200 5045700 716800 351860 364940 11649000 5914400 5734300 4545200 2245000 2300100 21126 3789 22033 111271;111272;111273;111274;111275;111276;111277;111278;111279;111280;111281;111282;111283;111284;111285 112545;112546;112547;112548;112549 112545 5 LLGAITTAAER LSAICIVGEENILDKLLGAITTAAERNNRE ILDKLLGAITTAAERNNRERFSPIVEGLEN K L L E R N 3 1 0 0 0 0 1 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 11 0 1114.6346 A6NML8;K4DI95;C9J6U3;O60879 A6NML8 294 304 DIAPH2 Protein diaphanous homolog 2 yes no 2 0.0092081 72.928 By matching By MS/MS 1 1 0.83636 0.71374 24.932 2 Median NaN NaN NaN 0 0 Median 0.70012 0.59838 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99913 0.85134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4327600 2263300 2064300 0 0 0 2871500 1576600 1294900 0 0 0 1456000 686670 769360 0 0 0 0 0 0 21127 528 22034 111286;111287 112550 112550 0 LLGASELPIVTPALR IGMVVKTGVVPQLVKLLGASELPIVTPALR LLGASELPIVTPALRAIGNIVTGTDEQTQV K L L L R A 2 1 0 0 0 0 1 1 0 1 4 0 0 0 2 1 1 0 0 1 0 0 15 0 1548.9239 P52292 P52292 301 315 KPNA2 Importin subunit alpha-1 yes yes 2 9.2812E-14 174.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 8 5 5 0.89851 0.75596 24.786 29 Median 1.0399 1.054 3.7944 3 0 Median 0.84433 0.73283 2.2348 3 0 Median 1.0174 1.0064 30.335 5 0 Median 0.85554 0.73593 19.493 8 0 Median 1.1673 1.1616 25.803 5 0 Median 0.86066 0.69277 7.7503 5 0 Median 144690000 71188000 73507000 18051000 8689800 9361300 22294000 11602000 10691000 37945000 18809000 19137000 11544000 5990300 5553700 31924000 13965000 17960000 22936000 12132000 10804000 21128 2448 22035 111288;111289;111290;111291;111292;111293;111294;111295;111296;111297;111298;111299;111300;111301;111302;111303;111304;111305;111306;111307;111308;111309;111310;111311;111312;111313;111314;111315;111316 112551;112552;112553;112554;112555;112556;112557;112558;112559;112560;112561;112562;112563;112564;112565;112566;112567;112568;112569;112570;112571;112572;112573;112574;112575;112576;112577;112578;112579 112558 29 LLGELLLDR LLHSENYVTKRQSLKLLGELLLDRHNFTIM KRQSLKLLGELLLDRHNFTIMTKYISKPEN K L L D R H 0 1 0 1 0 0 1 1 0 0 5 0 0 0 0 0 0 0 0 0 0 0 9 0 1040.623 Q9Y376;A0A087X0K1 Q9Y376 232 240 CAB39 Calcium-binding protein 39 yes no 2 0.010073 48.561 By matching By matching By MS/MS By matching 2 1 1 1 1.1311 1.0864 15.337 5 Median 1.163 1.1405 6.8658 2 0 Median 1.1095 0.95802 NaN 1 0 Median 1.1753 1.1424 NaN 1 0 Median 0.92441 0.81882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9301300 4221200 5080100 3383600 1466300 1917300 3066700 1409800 1656900 1960100 879600 1080500 890900 465510 425400 0 0 0 0 0 0 21129 4406 22036 111317;111318;111319;111320;111321 112580 112580 1 LLGELLQDNAK IKALAGCDFLTISPKLLGELLQDNAKLVPV ISPKLLGELLQDNAKLVPVLSAKAAQASDL K L L A K L 1 0 1 1 0 1 1 1 0 0 4 1 0 0 0 0 0 0 0 0 0 0 11 0 1212.6714 P37837;F2Z393 P37837 259 269 TALDO1 Transaldolase yes no 2 0.00011473 147.51 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1.0726 0.9846 41.949 10 Median 1.0624 0.96508 61.266 4 1 Median 0.98031 0.82723 27.819 4 0 Median 1.0537 1.0154 NaN 1 0 Median 1.1515 0.97457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 407350000 186000000 221360000 298280000 135810000 162470000 80595000 36419000 44176000 25705000 12167000 13538000 2775500 1605600 1169900 0 0 0 0 0 0 21130 2270 22037 111322;111323;111324;111325;111326;111327;111328;111329;111330;111331 112581;112582;112583;112584;112585;112586;112587;112588;112589;112590;112591;112592;112593;112594 112583 14 LLGELLQDNAKLVPVLSAK IKALAGCDFLTISPKLLGELLQDNAKLVPV LLQDNAKLVPVLSAKAAQASDLEKIHLDEK K L L A K A 2 0 1 1 0 1 1 1 0 0 6 2 0 0 1 1 0 0 0 2 0 0 19 1 2020.1932 P37837;F2Z393 P37837 259 277 TALDO1 Transaldolase yes no 3 5.2711E-05 39.863 By MS/MS 2 0.98077 0.88836 42.11 2 Median NaN NaN NaN 0 0 Median 0.98077 0.88836 42.11 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3004500 1248200 1756300 0 0 0 3004500 1248200 1756300 0 0 0 0 0 0 0 0 0 0 0 0 21131 2270 22038 111332;111333 112595 112595 1 LLGEQYYK ______________________________ VVENVVKLLGEQYYKDAMEQCHNYNARLCA K L L Y K D 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 8 0 1012.5229 Q92785;J3KMZ8;E9PN04 Q92785 11 18 DPF2 Zinc finger protein ubi-d4 yes no 2 0.0035088 91.906 By MS/MS By MS/MS By matching 2 3 2 1.1296 1.0233 27.07 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99774 1.0019 13.371 2 0 Median 1.2589 1.1343 7.7903 3 1 Median NaN NaN NaN 0 0 Median 0.86833 0.70455 38.595 2 0 Median 59567000 29411000 30156000 0 0 0 0 0 0 34371000 18093000 16278000 24774000 11084000 13690000 0 0 0 421470 233540 187940 21132 1299 22039 111334;111335;111336;111337;111338;111339;111340 112596;112597 112596 2 LLGGFQETCSK PFRSEVCFGKEGLWKLLGGFQETCSKAIRV GLWKLLGGFQETCSKAIRVGVIGFPNVGKS K L L S K A 0 0 0 0 1 1 1 2 0 0 2 1 0 1 0 1 1 0 0 0 0 0 11 0 1238.5965 Q9BVP2 Q9BVP2 243 253 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.00035193 71.451 By MS/MS By matching 1 1 0.94362 0.84713 5.5019 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85503 0.8148 NaN 1 0 Median 1.0414 0.88074 NaN 1 0 Median 8298200 4252300 4045900 0 0 0 0 0 0 0 0 0 0 0 0 7167600 3712600 3455100 1130600 539720 590870 21133 3858 22040 111341;111342 112598 112598 1 LLGGLDHIVDKVK LTSKRAGDWFKEELRLLGGLDHIVDKVKEC LRLLGGLDHIVDKVKECVDHLSRDEDEEKL R L L V K E 0 0 0 2 0 0 0 2 1 1 3 2 0 0 0 0 0 0 0 2 0 0 13 1 1405.8293 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 817 829 WAPAL Wings apart-like protein homolog yes no 3 0.010009 26.711 By MS/MS 1 0.88168 1.009 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88168 1.009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3228900 1658600 1570400 0 0 0 0 0 0 3228900 1658600 1570400 0 0 0 0 0 0 0 0 0 21134 3249 22041 111343 112599 112599 1 LLGGVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGGVTIAQGGVLPN QGGVLPNIQAVLLPKKTSATVGPKAPSGGK K L L P K K 2 0 1 0 0 2 0 4 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 0 2270.3726 P16104;Q96QV6;Q8IUE6 P16104 97 119 H2AFX;HIST1H2AA;HIST2H2AB Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B no no 2;3 2.2342E-103 241.15 By MS/MS By MS/MS 7 6 0.70108 0.74895 14.304 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66638 0.67838 9.6437 7 0 Median 1.0653 0.85275 6.5003 6 1 Median 929450000 490720000 438730000 0 0 0 0 0 0 0 0 0 0 0 0 463330000 271340000 191990000 466120000 219380000 246740000 21135 2024;3312 22042 111344;111345;111346;111347;111348;111349;111350;111351;111352;111353;111354;111355;111356 112600;112601;112602;112603;112604;112605;112606;112607;112608;112609;112610;112611 112605 11 LLGGVTIAQGGVLPNIQAVLLPKK RHLQLAIRNDEELNKLLGGVTIAQGGVLPN GGVLPNIQAVLLPKKTSATVGPKAPSGGKK K L L K K T 2 0 1 0 0 2 0 4 0 2 5 2 0 0 2 0 1 0 0 3 0 0 24 1 2398.4676 P16104;Q96QV6;Q8IUE6 P16104 97 120 H2AFX;HIST1H2AA;HIST2H2AB Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B no no 3 2.2097E-13 74.047 By MS/MS By MS/MS 1 4 1.1969 1.0096 21.761 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61482 0.70686 NaN 1 1 Median 1.2199 1.029 2.6879 2 1 Median 24303000 15599000 8704400 0 0 0 0 0 0 0 0 0 0 0 0 15125000 11866000 3258400 9178400 3732400 5446000 21136 2024;3312 22043 111357;111358;111359;111360;111361 112612;112613;112614;112615;112616;112617 112613 6 LLGHEVEDVIIK FAVDETSVSGYIYHKLLGHEVEDVIIKCQL YHKLLGHEVEDVIIKCQLPKRFTAQGLPDL K L L I K C 0 0 0 1 0 0 2 1 1 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1363.7711 Q92900 Q92900 456 467 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0025771 74.92 By MS/MS 1 2.0312 1.9576 NaN 1 Median 2.0312 1.9576 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21155000 7595000 13560000 21155000 7595000 13560000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21137 3564 22044 111362 112618 112618 1 LLGISLYAEQPAK SLGACMEGLNILLNRLLGISLYAEQPAKGE NRLLGISLYAEQPAKGEVWSEDVRKLAVVH R L L A K G 2 0 0 0 0 1 1 1 0 1 3 1 0 0 1 1 0 0 1 0 0 0 13 0 1401.7868 Q99797 Q99797 397 409 MIPEP Mitochondrial intermediate peptidase yes yes 2 0.0081813 37.191 By MS/MS By matching By matching 1 1 1 1.2064 1.3655 21.154 3 Median NaN NaN NaN 0 0 Median 1.2064 1.0422 NaN 1 0 Median 1.2024 1.3655 NaN 1 0 Median 1.5566 1.5814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6884400 3262800 3621600 0 0 0 2018600 930480 1088100 4745900 2296200 2449700 119990 36108 83881 0 0 0 0 0 0 21138 3769 22045 111363;111364;111365 112619 112619 1 LLGKVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGKVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHKAKGFRSSQ K L L P K K 2 0 1 0 0 2 0 3 0 2 5 2 0 0 2 0 1 0 0 3 0 0 23 1 2341.4461 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9 A0A0U1RR32 97 119 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A yes no 3 1.3428E-07 42.618 By MS/MS By matching 2 2 0.85334 0.81344 6.3153 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74872 0.81344 0.88021 2 0 Median 0.98718 0.83975 10.428 2 0 Median 34553000 18977000 15576000 0 0 0 0 0 0 0 0 0 0 0 0 20129000 11573000 8555100 14425000 7404000 7021000 21139 308 22046 111366;111367;111368;111369 112620;112621 112621 2 LLGLGSASGSVGR CKREGGDPEEKGVDRLLGLGSASGSVGRVA DRLLGLGSASGSVGRVAMSREDKEAAKLGL R L L G R V 1 1 0 0 0 0 0 4 0 0 3 0 0 0 0 3 0 0 0 1 0 0 13 0 1172.6513 Q9BU76 Q9BU76 118 130 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 1.1145E-06 113.93 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 2 2 1.2043 1.028 18.638 9 Median 1.0989 1.028 NaN 1 0 Median 1.2104 1.0133 NaN 1 0 Median 1.2129 1.1715 NaN 1 0 Median 1.1607 0.95906 16.644 2 0 Median 0.77721 0.83795 36.604 2 0 Median 1.2827 1.0699 12.747 2 0 Median 39656000 20013000 19643000 22479000 11192000 11288000 3120600 1388800 1731800 1726000 745470 980550 470900 189750 281150 9618800 5462800 4156000 2240700 1035000 1205700 21140 3835 22047 111370;111371;111372;111373;111374;111375;111376;111377;111378 112622;112623;112624;112625 112622 4 LLGLGVTDFSR QATMPDNTAAQKLCRLLGLGVTDFSRALLT KLCRLLGLGVTDFSRALLTPRIKVGRDYVQ R L L S R A 0 1 0 1 0 0 0 2 0 0 3 0 0 1 0 1 1 0 0 1 0 0 11 0 1176.6503 Q7Z406 Q7Z406 403 413 MYH14 Myosin-14 no no 2 0.00019545 75.378 By MS/MS By matching 1 1 1.1251 1.0114 4.1217 2 Median 1.0398 0.98236 NaN 1 0 Median 1.2174 1.0413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10940000 5195100 5744700 6338800 3002900 3335900 4601000 2192200 2408800 0 0 0 0 0 0 0 0 0 0 0 0 21141 3242 22048 111379;111380 112626;112627 112626 2 LLGLLFPLLAR LAEHGGHPAQEHFPKLLGLLFPLLARERHD HFPKLLGLLFPLLARERHDRVRDNICGALA K L L A R E 1 1 0 0 0 0 0 1 0 0 6 0 0 1 1 0 0 0 0 0 0 0 11 0 1224.7958 Q8TEX9;H0YN07;H0YMR4 Q8TEX9 941 951 IPO4 Importin-4 yes no 2 0.0069661 43.246 By MS/MS By matching By matching 3 2 1 1.0447 1.0651 44.216 6 Median 1.0325 0.95854 12.572 3 0 Median NaN NaN NaN 0 0 Median 1.1321 1.1768 8.4027 2 0 Median NaN NaN NaN 0 0 Median 2.7137 2.8231 NaN 1 0 Median NaN NaN NaN 0 0 Median 3113300 1487400 1625900 2767800 1365600 1402300 0 0 0 209640 86267 123380 0 0 0 135770 35574 100200 0 0 0 21142 3480 22049 111381;111382;111383;111384;111385;111386 112628 112628 1 LLGLPFIAGPVDIR ______________________________ RLLGLPFIAGPVDIRHFFTGLTIPDGGVHI R L L I R H 1 1 0 1 0 0 0 2 0 2 3 0 0 1 2 0 0 0 0 1 0 0 14 0 1479.8813 B9ZVT1;Q8IXT5;E5RJW8;E5RHG1;E5RJ83;E5RJV8 B9ZVT1 7 20 RBM12B RNA-binding protein 12B yes no 2 0.00021536 77.379 By matching By MS/MS 1 2 0.68998 0.73185 16.475 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68727 0.73854 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61939 0.63602 19.848 2 0 Median NaN NaN NaN 0 0 Median 3394300 1990100 1404200 0 0 0 0 0 0 808830 466830 342010 0 0 0 2585500 1523200 1062200 0 0 0 21143 658 22050 111387;111388;111389 112629;112630 112630 2 LLGMSFMNR HEMEEDEEDYESSAKLLGMSFMNRSSGLRN YESSAKLLGMSFMNRSSGLRNSATGYRQSP K L L N R S 0 1 1 0 0 0 0 1 0 0 2 0 2 1 0 1 0 0 0 0 0 0 9 0 1067.5256 Q9UIQ6 Q9UIQ6 76 84 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2 0.016192 42.869 By MS/MS By matching 1 1 1.3122 1.1959 14.879 2 Median 1.1215 1.0765 NaN 1 0 Median 1.5353 1.3286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5980400 2653000 3327400 4565300 2128400 2436900 1415100 524600 890480 0 0 0 0 0 0 0 0 0 0 0 0 21144 4292 22051 111390;111391 112631;112632 112631 2 LLGNTFVALSDLR EEDQRLINLVGESLRLLGNTFVALSDLRCN LRLLGNTFVALSDLRCNLACTPPRHLHVVR R L L L R C 1 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 13 0 1417.7929 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2 P46379 332 344 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 4.3287E-07 112.13 By MS/MS By MS/MS By MS/MS 3 4 1 1.166 0.99041 19.011 8 Median 1.1613 1.1379 30.036 3 0 Plateau 1.166 0.99041 8.7977 4 0 Median NaN NaN NaN 0 0 Median 1.2952 1.1034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41022000 18606000 22416000 9907300 4543600 5363700 29441000 13376000 16065000 0 0 0 1674200 686860 987360 0 0 0 0 0 0 21145 8 22052 111392;111393;111394;111395;111396;111397;111398;111399 112633;112634;112635;112636;112637;112638;112639;112640;112641;112642;112643 112634 10 LLGPDAAINLTDPDGALAK LAALKQQLVASHLEKLLGPDAAINLTDPDG DAAINLTDPDGALAKRLLLQLEATKNSKGG K L L A K R 4 0 1 3 0 0 0 2 0 1 4 1 0 0 2 0 1 0 0 0 0 0 19 0 1863.9942 Q13561;H0YI98;F8W1I6;F8VW18 Q13561 157 175 DCTN2 Dynactin subunit 2 yes no 2 3.6061E-05 51.774 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.84473 0.73695 14.718 4 Median 0.895 0.84248 NaN 1 0 Median 0.79829 0.67815 NaN 1 0 Median 0.63543 0.61305 NaN 1 0 Median 0.89387 0.80084 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31652000 16642000 15009000 5767300 2403800 3363500 6860600 3233200 3627400 13924000 8170300 5753700 5099900 2835100 2264700 0 0 0 0 0 0 21146 2824 22053 111400;111401;111402;111403 112644;112645 112644 2 LLGPLGMK TTEKAWKALEIAEKKLLGPLGMKTLDPDDM LEIAEKKLLGPLGMKTLDPDDMVYCGIYDN K L L M K T 0 0 0 0 0 0 0 2 0 0 3 1 1 0 1 0 0 0 0 0 0 0 8 0 827.4939 P35573 P35573 1408 1415 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.056496 33.358 By MS/MS 1 1.1311 1.0024 NaN 1 Median NaN NaN NaN 0 0 Median 1.1311 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12044000 5900900 6143400 0 0 0 12044000 5900900 6143400 0 0 0 0 0 0 0 0 0 0 0 0 21147 2243 22054 111404 112646 112646 1 LLGPNASPDGLIPWTR KRGLNVDQLNMLGEKLLGPNASPDGLIPWT LGPNASPDGLIPWTRFCKENINDKNFPFWL K L L T R F 1 1 1 1 0 0 0 2 0 1 3 0 0 0 3 1 1 1 0 0 0 0 16 0 1705.9152 P42224;J3KPM9 P42224 526 541 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.0066625 31.228 By MS/MS By matching 1 1 0.73746 0.67276 6.4904 2 Median 0.73492 0.70436 NaN 1 0 Median 0.74001 0.64259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7139400 4147000 2992400 4861900 2854400 2007600 2277500 1292700 984830 0 0 0 0 0 0 0 0 0 0 0 0 21148 2308 22055 111405;111406 112647;112648 112648 2 LLGPPPPGGGR ______________________________ MDERLLGPPPPGGGRGGLGLVSGEPGGPGE R L L G R G 0 1 0 0 0 0 0 4 0 0 2 0 0 0 4 0 0 0 0 0 0 0 11 0 1016.5767 P40425 P40425 5 15 PBX2 Pre-B-cell leukemia transcription factor 2 yes yes 2 0.023925 51.854 By MS/MS 1 0.30722 0.30351 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30722 0.30351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1066300 774430 291850 0 0 0 0 0 0 1066300 774430 291850 0 0 0 0 0 0 0 0 0 21149 2286 22056 111407 112649 112649 1 LLGPSAAADILQLSSSLPLQSR YPGNRQPNPPLILQRLLGPSAAADILQLSS ADILQLSSSLPLQSRGRARLLVGNDDVHII R L L S R G 3 1 0 1 0 2 0 1 0 1 6 0 0 0 2 5 0 0 0 0 0 0 22 0 2236.2427 Q7Z6Z7 Q7Z6Z7 2580 2601 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 9.42E-10 61.732 By MS/MS By MS/MS 4 4 0.72868 0.73017 11.082 7 Median 0.78164 0.77754 9.7964 4 0 Linear 0.90216 0.73017 13.929 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24649000 12598000 12051000 9829900 4831300 4998600 14819000 7766300 7052500 0 0 0 0 0 0 0 0 0 0 0 0 21150 3253 22057 111408;111409;111410;111411;111412;111413;111414;111415 112650;112651;112652;112653;112654;112655 112655 6 LLGPVLVK KEELALLDGSNVVFKLLGPVLVKQELGEAR GSNVVFKLLGPVLVKQELGEARATVGKRLD K L L V K Q 0 0 0 0 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 8 0 837.56878 O15212;A2AB88 O15212 59 66 PFDN6 Prefoldin subunit 6 yes no 2 0.007444 67.035 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.0937 1.0124 12.392 5 Median 1.1329 1.0454 21.415 2 0 Median 1.0937 0.89971 NaN 1 0 Median 1.0367 1.0124 NaN 1 0 Median 1.2575 1.019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55471000 26681000 28790000 33070000 16293000 16777000 16282000 7631300 8651100 3506300 1586900 1919400 2612900 1170400 1442600 0 0 0 0 0 0 21151 1530 22058 111416;111417;111418;111419;111420 112656;112657;112658;112659;112660 112658 5 LLGQFTLIGIPPAPR IKVCQGEREMAGDNKLLGQFTLIGIPPAPR LLGQFTLIGIPPAPRGVPQIEVTFDIDANG K L L P R G 1 1 0 0 0 1 0 2 0 2 3 0 0 1 3 0 1 0 0 0 0 0 15 0 1591.945 P38646;H0Y8S0 P38646 499 513 HSPA9 Stress-70 protein, mitochondrial yes no 2 8.4132E-10 141.88 By MS/MS By MS/MS By MS/MS By matching By matching By matching 6 9 2 1 1 2 0.85375 0.8006 20.453 21 Median 0.73779 0.72296 16.509 6 0 Median 0.92288 0.8006 10.106 9 1 Median 0.7311 0.75665 5.6763 2 0 Median 1.0036 0.87496 NaN 1 0 Median 1.1398 1.218 NaN 1 0 Median 1.3363 1.1547 16.058 2 0 Median 69904000 36662000 33242000 26462000 14161000 12301000 35473000 18233000 17240000 6410200 3552400 2857800 95013 47116 47897 1288900 595740 693130 174760 72144 102610 21152 2277 22059 111421;111422;111423;111424;111425;111426;111427;111428;111429;111430;111431;111432;111433;111434;111435;111436;111437;111438;111439;111440;111441 112661;112662;112663;112664;112665;112666;112667;112668;112669;112670;112671;112672;112673;112674;112675;112676;112677;112678;112679;112680;112681;112682;112683;112684;112685;112686;112687;112688 112665 28 LLGQIVDR CVLTGTPESIEQAKRLLGQIVDRCRNGPGF SIEQAKRLLGQIVDRCRNGPGFHNDIDSNS R L L D R C 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 912.53927 Q96I24 Q96I24 140 147 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 1 2 1.2077 1.0838 14.873 10 Median 0.79084 0.74987 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0713 1.0627 6.9381 2 0 Median 1.4075 1.2048 7.6086 4 0 Median 1.0196 1.0142 NaN 1 0 Median 1.2483 1.0351 10.902 2 0 Median 165210000 74467000 90742000 13371000 7342100 6028800 0 0 0 52628000 23435000 29193000 36996000 14834000 22161000 25239000 12518000 12721000 36975000 16338000 20637000 21153 3673 22060 111442;111443;111444;111445;111446;111447;111448;111449;111450;111451 112689;112690;112691;112692;112693;112694;112695;112696;112697;112698;112699 112693 11 LLGQRPGPYDR SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG PPRRLLGQRPGPYDRPIGGRGGYYGAGRGS R L L D R P 0 2 0 1 0 1 0 2 0 0 2 0 0 0 2 0 0 0 1 0 0 0 11 1 1270.6782 P31942 P31942 106 116 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3 0.021866 38.402 By MS/MS By MS/MS 1 1 0.79966 0.7892 44.48 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55207 0.57623 NaN 1 1 Median 1.1583 1.0809 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4845800 2793500 2052300 0 0 0 0 0 0 3151700 1966500 1185200 1694200 827060 867100 0 0 0 0 0 0 21154 2208 22061 111452;111453 112700;112701 112700 2 LLGQRPGPYDRPIGGR SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG LGQRPGPYDRPIGGRGGYYGAGRGSMYDRM R L L G R G 0 3 0 1 0 1 0 4 0 1 2 0 0 0 3 0 0 0 1 0 0 0 16 2 1750.9591 P31942 P31942 106 121 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3;4 2.8088E-05 73.022 By matching By matching By MS/MS By matching 2 1 3 3 0.52914 0.67205 21.47 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56709 0.65309 30.588 2 0 Median 0.52224 0.50846 NaN 1 0 Median 0.52914 0.67205 13.555 3 0 Median 0.82835 0.76412 28.929 3 0 Median 73104000 48229000 24875000 0 0 0 0 0 0 3618500 2278600 1339900 2750700 1703700 1047000 64338000 42770000 21569000 2397000 1477300 919730 21155 2208 22062 111454;111455;111456;111457;111458;111459;111460;111461;111462 112702;112703;112704;112705 112704 4 LLGSLEEAR KLQEQEGEFRTRERRLLGSLEEARGTEKQQ RTRERRLLGSLEEARGTEKQQLDHARGLEL R L L A R G 1 1 0 0 0 0 2 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 986.53966 Q5TZA2;B1AKD8 Q5TZA2 1366 1374 CROCC Rootletin yes no 2 0.016564 57.59 By MS/MS 1 0.82741 0.91858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82741 0.91858 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2095800 1209100 886660 0 0 0 0 0 0 2095800 1209100 886660 0 0 0 0 0 0 0 0 0 21156 3107 22063 111463 112706 112706 1 LLGSLYALGIPK LNSQIASVWHGTLSKLLGSLYALGIPKASK LSKLLGSLYALGIPKASKELQSVEQEVRWR K L L P K A 1 0 0 0 0 0 0 2 0 1 4 1 0 0 1 1 0 0 1 0 0 0 12 0 1243.754 Q969Z0;C9J7P5;C9IZN7 Q969Z0 149 160 TBRG4 Protein TBRG4 yes no 2 0.0011286 56.729 By matching By MS/MS 1 1 1.1255 1.0059 12.36 2 Median 0.96663 0.92167 NaN 1 0 Median 1.3104 1.0977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17483000 7691200 9791400 6216100 3157300 3058900 11267000 4534000 6732500 0 0 0 0 0 0 0 0 0 0 0 0 21157 3591 22064 111464;111465 112707 112707 1 LLGSTLTSEEK YENNVHKMQLPFSSKLLGSTLTSEEKQERR FSSKLLGSTLTSEEKQERRQQQLRRLQELN K L L E K Q 0 0 0 0 0 0 2 1 0 0 3 1 0 0 0 2 2 0 0 0 0 0 11 0 1176.6238 Q9H9F9 Q9H9F9 284 294 ACTR5 Actin-related protein 5 yes yes 2 0.0054074 46.158 By matching By matching By MS/MS 1 1 1 1.1411 1.2125 47.285 3 Median 2.5171 2.4184 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1411 1.2125 NaN 1 0 Median 1.1396 0.97845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8168400 3171400 4997000 2922300 830000 2092300 0 0 0 4207000 1940800 2266200 1039100 400600 638520 0 0 0 0 0 0 21158 3999 22065 111466;111467;111468 112708 112708 1 LLGSTLTSEEKQER YENNVHKMQLPFSSKLLGSTLTSEEKQERR KLLGSTLTSEEKQERRQQQLRRLQELNARR K L L E R R 0 1 0 0 0 1 3 1 0 0 3 1 0 0 0 2 2 0 0 0 0 0 14 1 1589.8261 Q9H9F9 Q9H9F9 284 297 ACTR5 Actin-related protein 5 yes yes 3 0.00083897 41.967 By matching By MS/MS 1 1 1.3286 1.3281 21.642 2 Median NaN NaN NaN 0 0 Median 1.6441 1.5477 NaN 1 0 Median 1.0736 1.1397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7755600 3549900 4205800 0 0 0 1028100 461110 566940 6727600 3088800 3638800 0 0 0 0 0 0 0 0 0 21159 3999 22066 111469;111470 112709;112710 112710 2 LLGTIYTAAEEIEAVGGK ANIVIAAKTAQPHPKLLGTIYTAAEEIEAV TIYTAAEEIEAVGGKALPCIVDVRDEQQIS K L L G K A 3 0 0 0 0 0 3 3 0 2 2 1 0 0 0 0 2 0 1 1 0 0 18 0 1833.9724 Q6YN16 Q6YN16 50 67 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 2 5.1488E-08 94.191 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.2892 1.126 17.26 5 Median 0.79392 0.77875 NaN 1 0 Median 1.308 1.1149 1.929 2 0 Median 1.1442 1.126 NaN 1 0 Median 1.3465 1.1985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39111000 16348000 22763000 1332500 671910 660570 32235000 13186000 19049000 5417100 2434500 2982600 125990 55577 70414 0 0 0 0 0 0 21160 3195 22067 111471;111472;111473;111474;111475 112711;112712;112713;112714;112715 112714 5 LLGTPTEEQWPSMTK FPGNDVDDQLKRIFRLLGTPTEEQWPSMTK LLGTPTEEQWPSMTKLPDYKPYPMYPATTS R L L T K L 0 0 0 0 0 1 2 1 0 0 2 1 1 0 2 1 3 1 0 0 0 0 15 0 1716.8393 Q00535 Q00535 218 232 CDK5 Cyclin-dependent-like kinase 5 yes yes 2 0.0003374 54.259 By MS/MS By matching 1 1 0.8524 0.75906 22.727 2 Median 0.69064 0.64638 NaN 1 0 Median 1.0521 0.8914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7767400 4216400 3551000 7440600 4070300 3370300 326730 146060 180670 0 0 0 0 0 0 0 0 0 0 0 0 21161 2675 22068 111476;111477 112716;112717 112717 2 LLGVFEQNQDRK REVYEEAGVKGKLGRLLGVFEQNQDRKHRT LGRLLGVFEQNQDRKHRTYVYVLTVTELLE R L L R K H 0 1 1 1 0 2 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1445.7627 Q96G61 Q96G61 79 90 NUDT11 Diphosphoinositol polyphosphate phosphohydrolase 3-beta yes yes 3 0.019862 36.284 By MS/MS 1 1.6102 1.4207 NaN 1 Median NaN NaN NaN 0 0 Median 1.6102 1.4207 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2013200 587980 1425200 0 0 0 2013200 587980 1425200 0 0 0 0 0 0 0 0 0 0 0 0 21162 3653 22069 111478 112718 112718 1 LLGVHTQTR DHQPPQYKLDPRLARLLGVHTQTRAAIMQA DPRLARLLGVHTQTRAAIMQALWLYIKHNQ R L L T R A 0 1 0 0 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 9 0 1023.5825 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 245 253 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.00839 50.127 By MS/MS By MS/MS 1 2 1.5787 1.3224 18.155 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0437 1.1013 NaN 1 0 Median 1.6864 1.447 12.742 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2211200 851900 1359300 0 0 0 0 0 0 1171900 509110 662810 1039200 342790 696450 0 0 0 0 0 0 21163 655 22070 111479;111480;111481 112719;112720;112721 112719 3 LLGVSWR TLEDGSRLNSKQLNRLLGVSWRLMQIQPNR LNSKQLNRLLGVSWRLMQIQPNREDTETLI R L L W R L 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 7 0 829.48102 Q9NXF1;A0A0A0MSR3 Q9NXF1 482 488 TEX10 Testis-expressed sequence 10 protein yes no 2 0.026776 52.683 By matching By MS/MS By matching By matching 1 1 1 1 1.2814 1.2188 8.428 4 Median NaN NaN NaN 0 0 Median 1.1725 1.0645 NaN 1 0 Median 1.1866 1.2721 NaN 1 0 Median 1.5341 1.2693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3838 1.1703 NaN 1 0 Median 3413000 1460100 1952900 0 0 0 442530 197290 245240 2647300 1131900 1515500 148660 60675 87983 0 0 0 174490 70261 104230 21164 4163 22071 111482;111483;111484;111485 112722;112723 112722 2 LLGWIQNK EEEDEEAKKQTPKQRLLGWIQNKLPQLPIT KQTPKQRLLGWIQNKLPQLPITNFSRDWQS R L L N K L 0 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 8 0 970.56 P21333;F8WE98;Q60FE5;A0A087WWY3;Q14315;O75369 P21333 172 179 FLNA;FLNC;FLNB Filamin-A;Filamin-C;Filamin-B no no 2 0.0027375 127.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 8 6 3 2 1 3 1.1338 1.1106 24.129 23 Median 1.2294 1.1852 13.425 8 1 Median 1.0812 0.96594 14.442 6 0 Median 1.113 1.2253 7.9626 3 0 Median 1.1807 1.1184 0.99229 2 0 Median 1.467 1.5376 NaN 1 0 Median 1.1625 0.99174 57.954 3 0 Median 495300000 229450000 265850000 198850000 87090000 111760000 246360000 119160000 127200000 32618000 14552000 18066000 8317500 3993700 4323800 5250200 2031700 3218500 3902900 2622200 1280700 21165 2088;3120;1664;2871 22072 111486;111487;111488;111489;111490;111491;111492;111493;111494;111495;111496;111497;111498;111499;111500;111501;111502;111503;111504;111505;111506;111507;111508 112724;112725;112726;112727;112728;112729;112730;112731;112732;112733;112734;112735;112736;112737;112738 112725 15 LLGYVATLK ATCVRLLGRNSNSKRLLGYVATLKDNFGFI NSNSKRLLGYVATLKDNFGFIETANHDKEI R L L L K D 1 0 0 0 0 0 0 1 0 0 3 1 0 0 0 0 1 0 1 1 0 0 9 0 976.59572 O75534;E9PLT0 O75534 519 527 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.0027865 69.598 By MS/MS By matching By MS/MS By matching 2 1 2 2 1.2838 1.1404 19.142 7 Median 1.3887 1.3318 0.072141 2 0 Median 1.174 1.0262 NaN 1 0 Median 1.2502 1.3563 35.338 2 0 Median 1.2579 1.094 5.8751 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28729000 12429000 16300000 11014000 4697700 6315900 11141000 5260800 5880500 5965000 2234800 3730200 609030 236000 373030 0 0 0 0 0 0 21166 1684 22073 111509;111510;111511;111512;111513;111514;111515 112739;112740;112741 112739 3 LLHAQYGELIQPR GLEEETHAHYIDVARLLHAQYGELIQPRNG ARLLHAQYGELIQPRNGSVDETPKMSAGQM R L L P R N 1 1 0 0 0 2 1 1 1 1 3 0 0 0 1 0 0 0 1 0 0 0 13 0 1536.8413 J3KRA9;Q96Q15 J3KRA9 2822 2834 SMG1 Serine/threonine-protein kinase SMG1 yes no 3 1.5858E-05 138.75 By MS/MS By matching By MS/MS 1 1 1 0.79405 0.78334 2.7285 3 Median 0.79405 0.78334 NaN 1 0 Median 0.89637 0.75628 NaN 1 0 Median 0.74096 0.79803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17772000 10024000 7748300 8261900 4264100 3997800 4673300 2876700 1796600 4837100 2883200 1953900 0 0 0 0 0 0 0 0 0 21167 1325 22074 111516;111517;111518 112742;112743;112744;112745 112743 4 LLHDLQIGEK FCEYKEPESTLRALRLLHDLQIGEKKLLVK LRALRLLHDLQIGEKKLLVKVDAKTKAQLD R L L E K K 0 0 0 1 0 1 1 1 1 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1164.6503 P49756;E9PQU5 P49756 146 155 RBM25 RNA-binding protein 25 yes no 2 0.0007099 107.21 By MS/MS By MS/MS By matching 2 2 1 1.0167 1.0258 30.633 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98529 1.0698 5.9479 2 0 Median 1.1497 0.99883 8.8544 2 0 Median NaN NaN NaN 0 0 Median 0.63412 0.5289 NaN 1 0 Median 22335000 11404000 10931000 0 0 0 0 0 0 14191000 7484500 6706500 7460700 3566800 3893800 0 0 0 683370 352750 330620 21168 2397 22075 111519;111520;111521;111522;111523 112746;112747;112748;112749;112750;112751 112749 5 LLHDLQIGEKK FCEYKEPESTLRALRLLHDLQIGEKKLLVK RALRLLHDLQIGEKKLLVKVDAKTKAQLDE R L L K K L 0 0 0 1 0 1 1 1 1 1 3 2 0 0 0 0 0 0 0 0 0 0 11 1 1292.7452 P49756;E9PQU5 P49756 146 156 RBM25 RNA-binding protein 25 yes no 3 9.5212E-05 70.488 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1402 1.0295 20.599 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0731 1.2336 26.089 2 0 Median 1.0122 0.96417 NaN 1 0 Median 1.2834 1.4371 NaN 1 0 Median 1.1402 1.0295 NaN 1 0 Median 19318000 9039800 10279000 0 0 0 0 0 0 13942000 6553900 7387700 785940 353510 432430 2755000 1329200 1425700 1835900 803230 1032700 21169 2397 22076 111524;111525;111526;111527;111528 112752;112753;112754;112755;112756;112757;112758 112753 7 LLHDQIEK SKCVCRCEDLEKQNRLLHDQIEKLSDKVVA DLEKQNRLLHDQIEKLSDKVVASVKEGVQG R L L E K L 0 0 0 1 0 1 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 994.54475 P12270 P12270 1158 1165 TPR Nucleoprotein TPR yes yes 2 0.019541 57.281 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.1076 1.0772 7.8944 7 Median 1.0567 1.0473 NaN 1 0 Median 1.1988 1.0531 NaN 1 0 Median 0.9786 1.082 0.63798 2 0 Median 1.2365 1.153 12.089 2 0 Median NaN NaN NaN 0 0 Median 1.4485 1.2414 NaN 1 1 Median 14219000 6514500 7704900 402300 182890 219410 1299200 606940 692290 7942000 3840900 4101100 2787300 1233000 1554300 0 0 0 1788600 650810 1137800 21170 1978 22077 111529;111530;111531;111532;111533;111534;111535 112759;112760;112761;112762;112763;112764 112760 6 LLHDQVGVIQFGPYK PVDHILAGSFETAMRLLHDQVGVIQFGPYK LLHDQVGVIQFGPYKQLFLQTYARGRTTYQ R L L Y K Q 0 0 0 1 0 2 0 2 1 1 2 1 0 1 1 0 0 0 1 2 0 0 15 0 1712.925 P53621;A0A3B3IS84;A0A3B3ISC6 P53621 942 956 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2;3 1.6761E-09 142.08 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 1 1 2 1 1 0.99851 0.95996 24.97 11 Median 0.9417 0.93786 7.2904 5 2 Median 0.98318 0.83481 NaN 1 0 Median 1.293 1.4021 NaN 1 0 Median 1.0668 0.91222 7.9791 2 0 Median 1.9369 1.8702 NaN 1 0 Median 1.2779 1.1197 NaN 1 0 Median 81706000 39726000 41980000 69461000 34202000 35259000 6284600 3021000 3263600 4357300 1850200 2507100 798350 380120 418230 718980 227600 491380 85411 44866 40545 21171 2473 22078 111536;111537;111538;111539;111540;111541;111542;111543;111544;111545;111546 112765;112766;112767;112768;112769;112770;112771;112772;112773;112774 112767 10 LLHEVQELTTEVEK EGLGVKETPQQKYQRLLHEVQELTTEVEKI RLLHEVQELTTEVEKIKTTVKESATEEKLT R L L E K I 0 0 0 0 0 1 4 0 1 0 3 1 0 0 0 0 2 0 0 2 0 0 14 0 1666.8778 Q13561;F8W1I6;F8VW18;F8VX93;F8VRV7;H0YHL1 Q13561 106 119 DCTN2 Dynactin subunit 2 yes no 2;3 3.7581E-07 107.85 By MS/MS By matching By MS/MS 2 1 2 1.2866 1.2199 21.075 5 Median 1.1443 1.0782 17.461 2 0 Median 1.7655 1.5267 NaN 1 0 Median 1.2478 1.2134 25.786 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30738000 13793000 16945000 11561000 5347300 6213200 251910 88320 163590 18925000 8357300 10568000 0 0 0 0 0 0 0 0 0 21172 2824 22079 111547;111548;111549;111550;111551 112775;112776;112777;112778;112779 112779 5 LLHGFNAEGIHFS SDKRARSMDIDDFIRLLHGFNAEGIHFS__ IRLLHGFNAEGIHFS_______________ R L L F S - 1 0 1 0 0 0 1 2 2 1 2 0 0 2 0 1 0 0 0 0 0 0 13 0 1440.715 Q9UNQ2 Q9UNQ2 301 313 DIMT1 Probable dimethyladenosine transferase yes yes 3 0.062878 20.463 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2955100 0 0 2955100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21173 4348 22080 111552 112780 112780 1 LLHIEELR DTGDAVLNEAAQILRLLHIEELRELQTKIN EAAQILRLLHIEELRELQTKINEAIVAVQA R L L L R E 0 1 0 0 0 0 2 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1021.592 Q9Y224 Q9Y224 206 213 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.0022957 111.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.1112 0.97903 6.5171 6 Median 1.1014 1.0458 NaN 1 0 Median 1.1775 0.99571 NaN 1 0 Median 0.98916 0.94992 NaN 1 0 Median 1.2266 1.0162 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1002 0.91428 7.2856 2 0 Median 62364000 30721000 31643000 16927000 8417900 8508800 7018200 3426400 3591800 28180000 14109000 14071000 2629300 1190400 1438900 0 0 0 7609900 3578100 4031800 21174 4367 22081 111553;111554;111555;111556;111557;111558 112781;112782;112783;112784;112785;112786;112787;112788 112784 8 LLHIIIDDNKR LPTIPISLVSFLVERLLHIIIDDNKRTQIV LVERLLHIIIDDNKRTQIVTEIISEIRAPI R L L K R T 0 1 1 2 0 0 0 0 1 3 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1348.7827 Q9BPX3;H0Y9Z8 Q9BPX3 448 458 NCAPG Condensin complex subunit 3 yes no 3 4.4156E-05 110.39 By matching By matching By MS/MS 1 1 1 1.007 0.96776 15.399 3 Median 1.0189 1.0543 NaN 1 0 Median 0.8171 0.7818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.007 0.96776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4247200 2228600 2018600 1460300 776950 683330 897790 571940 325850 0 0 0 1889100 879680 1009500 0 0 0 0 0 0 21175 3778 22082 111559;111560;111561 112789 112789 1 LLHIYYQNSIDDK AGKEAAEKVSWIKDKLLHIYYQNSIDDKLL DKLLHIYYQNSIDDKLLVEKIFAQYLVPHN K L L D K L 0 0 1 2 0 1 0 0 1 2 2 1 0 0 0 1 0 0 2 0 0 0 13 0 1620.8148 Q29RF7;H0Y9L9 Q29RF7 450 462 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 3 0.0001346 72.089 By MS/MS 1 1.1721 1.0134 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1721 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5110500 2122700 2987800 0 0 0 0 0 0 0 0 0 5110500 2122700 2987800 0 0 0 0 0 0 21176 3003 22083 111562 112790 112790 1 LLHIYYQNSIDDR AGKDAAKQIAWIKDKLLHIYYQNSIDDRLL DKLLHIYYQNSIDDRLLVERIFAQYMVPHN K L L D R L 0 1 1 2 0 1 0 0 1 2 2 0 0 0 0 1 0 0 2 0 0 0 13 0 1648.8209 Q9NTI5 Q9NTI5 440 452 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 8.5667E-05 87.298 By MS/MS By MS/MS 2 1 1.0622 1.1677 2.2932 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0622 1.1677 2.2932 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41077000 19308000 21769000 0 0 0 0 0 0 41077000 19308000 21769000 0 0 0 0 0 0 0 0 0 21177 4107 22084 111563;111564;111565 112791;112792;112793 112791 3 LLHKYPFILPHQQVDK LFFRQREGPFYPTLRLLHKYPFILPHQQVD LHKYPFILPHQQVDKGAIKFVLSGANIMCP R L L D K G 0 0 0 1 0 2 0 0 2 1 3 2 0 1 2 0 0 0 1 1 0 0 16 1 1975.1044 Q9ULC4;A0A3B3IRV3 Q9ULC4 84 99 MCTS1 Malignant T-cell-amplified sequence 1 yes no 4 0.00019136 44.045 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.92376 0.92282 18.97 4 Median 0.66174 0.67335 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93308 0.93024 NaN 1 0 Median 1.0161 0.91547 NaN 1 0 Median 0.91453 1.0514 NaN 1 0 Median NaN NaN NaN 0 0 Median 25567000 13672000 11895000 5839100 3495100 2344000 0 0 0 7784000 4645300 3138700 7094500 3473500 3621100 4849100 2058100 2790900 0 0 0 21178 4323 22085 111566;111567;111568;111569 112794;112795;112796;112797;112798 112797 5 LLHLLLDDMPVKPYSDGEGGIEDENR LRVTSLNRQRSHTQRLLHLLLDDMPVKPYS KPYSDGEGGIEDENRSVSGFLHFDTATKVR R L L N R S 0 1 1 4 0 0 3 3 1 1 5 1 1 0 2 1 0 0 1 1 0 0 26 1 2924.4226 Q92621 Q92621 1139 1164 NUP205 Nuclear pore complex protein Nup205 yes yes 3;4 1.4079E-08 44.632 By matching By MS/MS 1 3 0.75259 0.89653 41.466 4 Median NaN NaN NaN 0 0 Median 1.6851 1.6226 NaN 1 0 Median 0.65942 0.78524 25.389 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8198200 5200500 2997700 0 0 0 794590 275020 519570 7403600 4925500 2478100 0 0 0 0 0 0 0 0 0 21179 3547 22086;22087 111570;111571;111572;111573 112799;112800;112801 112799 1764 3 LLHQFSFSPER KDLFINEYRSLLADRLLHQFSFSPEREIRN LADRLLHQFSFSPEREIRNVELLKLRFGEA R L L E R E 0 1 0 0 0 1 1 0 1 0 2 0 0 2 1 2 0 0 0 0 0 0 11 0 1359.6935 Q9UJX6 Q9UJX6 527 537 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 3 0.001438 46.352 By matching By MS/MS By matching 1 1 1 0.86782 0.92491 121.16 3 Median NaN NaN NaN 0 0 Median 0.11427 0.11903 NaN 1 0 Median 0.86782 0.92491 NaN 1 0 Median 1.1881 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12361000 8831500 3529800 0 0 0 5679700 4992900 686830 6036800 3589100 2447700 644880 249590 395300 0 0 0 0 0 0 21180 4303 22088 111574;111575;111576 112802;112803 112802 2 LLHQVVEQLQK LTHPSFTSESTKQPKLLHQVVEQLQKVHFI KQPKLLHQVVEQLQKVHFITDTLSKGETKF K L L Q K V 0 0 0 0 0 3 1 0 1 0 3 1 0 0 0 0 0 0 0 2 0 0 11 0 1333.7718 P06746;E7EW18;H0YBX1;H0YAV8 P06746 210 220 POLB DNA polymerase beta yes no 3 0.0020391 42.21 By matching By MS/MS By MS/MS 1 2 1 1.1246 1.1183 16.631 4 Median NaN NaN NaN 0 0 Median 0.94776 0.81387 NaN 1 0 Median 1.1246 1.1195 4.2047 2 1 Median 1.3582 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20577000 10199000 10378000 0 0 0 1602800 799520 803230 15474000 7964600 7509200 3500100 1434400 2065700 0 0 0 0 0 0 21181 1876 22089 111577;111578;111579;111580 112804;112805;112806;112807;112808 112805 5 LLHSEAYLK PTTPMFVAPPPKTQRLLHSEAYLKYIEGLS PPKTQRLLHSEAYLKYIEGLSAESNSISKW R L L L K Y 1 0 0 0 0 0 1 0 1 0 3 1 0 0 0 1 0 0 1 0 0 0 9 0 1072.5917 Q86U86 Q86U86 1604 1612 PBRM1 Protein polybromo-1 yes yes 2 0.0049266 79.809 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21182 3273 22090 111581 112809 112809 1 LLHSENYVTK FLEQHYDRFFSEYEKLLHSENYVTKRQSLK SEYEKLLHSENYVTKRQSLKLLGELLLDRH K L L T K R 0 0 1 0 0 0 1 0 1 0 2 1 0 0 0 1 1 0 1 1 0 0 10 0 1202.6295 Q9Y376;A0A087X0K1 Q9Y376 217 226 CAB39 Calcium-binding protein 39 yes no 3 0.0038604 39.001 By matching By MS/MS By matching 2 1 1 1.1424 1.0388 8.1043 4 Median 1.0586 1.0371 6.3969 2 0 Median 1.1801 0.99452 NaN 1 0 Median 1.2112 1.1749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5733000 2562700 3170300 2439700 1087200 1352500 1865300 869480 995800 1428000 606030 821980 0 0 0 0 0 0 0 0 0 21183 4406 22091 111582;111583;111584;111585 112810 112810 1 LLHSENYVTKR FLEQHYDRFFSEYEKLLHSENYVTKRQSLK EYEKLLHSENYVTKRQSLKLLGELLLDRHN K L L K R Q 0 1 1 0 0 0 1 0 1 0 2 1 0 0 0 1 1 0 1 1 0 0 11 1 1358.7306 Q9Y376;A0A087X0K1 Q9Y376 217 227 CAB39 Calcium-binding protein 39 yes no 3 0.040838 16.533 By MS/MS 1 1.1217 1.1986 NaN 1 Median 1.1217 1.1986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 784070 368800 415280 784070 368800 415280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21184 4406 22092 111586 112811 112811 1 LLHSFLAK STNWRDHVKAMEERKLLHSFLAKSQDGLPP KAMEERKLLHSFLAKSQDGLPPRRMKDSYI K L L A K S 1 0 0 0 0 0 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 8 0 927.55419 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 66 73 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.039213 56.122 By MS/MS 1 0.71399 0.67843 NaN 1 Median 0.71399 0.67843 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3876100 2571900 1304200 3876100 2571900 1304200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21185 4400 22093 111587 112812 112812 1 LLHSSQMLR QIEKLSKRQLFFRKKLLHSSQMLRAVSLGQ LFFRKKLLHSSQMLRAVSLGQDRYRRRYWV K L L L R A 0 1 0 0 0 1 0 0 1 0 3 0 1 0 0 2 0 0 0 0 0 0 9 0 1083.5859 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1074 1082 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.046568 31.934 By MS/MS 1 1.2399 1.3027 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2399 1.3027 NaN 1 0 Median NaN NaN NaN 0 0 Median 3460400 1638900 1821500 0 0 0 0 0 0 0 0 0 0 0 0 3460400 1638900 1821500 0 0 0 21186 1065 22094 111588 112813 112813 1 LLHTLEGHAMPIR AIDGIINIFDIATGKLLHTLEGHAMPIRSL GKLLHTLEGHAMPIRSLTFSPDSQLLVTAS K L L I R S 1 1 0 0 0 0 1 1 2 1 3 0 1 0 1 0 1 0 0 0 0 0 13 0 1486.8079 H0YL19;H0YN81;Q9GZS3;H3BQA8;H0YLA1 H0YL19 89 101 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2;3 2.7199E-06 121.73 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 0.97371 0.86819 10.426 8 Median 0.9028 0.84365 15.31 3 0 Median 1.0168 0.85031 6.9968 2 1 Median 0.97001 0.94496 4.6988 2 1 Median 0.97755 0.81525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104570000 54033000 50533000 70520000 37031000 33489000 7195900 3949000 3246900 24075000 11447000 12628000 2775000 1605900 1169000 0 0 0 0 0 0 21187 1194 22095;22096 111589;111590;111591;111592;111593;111594;111595;111596;111597 112814;112815;112816;112817;112818;112819;112820;112821;112822;112823 112816 400 10 LLHVAVSDVNDDVR AMAYCGSGNNKAIRRLLHVAVSDVNDDVRR RLLHVAVSDVNDDVRRAAVESLGFILFRTP R L L V R R 1 1 1 3 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 4 0 0 14 0 1550.8053 A0A087WW66;Q99460;H7C378 A0A087WW66 602 615 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 0.0023236 35.204 By MS/MS By MS/MS By matching 3 2 1 1.0219 0.95368 32.557 6 Median 0.99861 0.96474 10.397 3 1 Median 0.79607 0.6711 38.623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2069 1.3245 NaN 1 0 Median NaN NaN NaN 0 0 Median 26021000 12287000 13733000 17157000 8481400 8675100 7445500 3214800 4230700 0 0 0 0 0 0 1418400 590930 827510 0 0 0 21188 54 22097 111598;111599;111600;111601;111602;111603 112824;112825 112825 2 LLHVAVSDVNDDVRR AMAYCGSGNNKAIRRLLHVAVSDVNDDVRR LLHVAVSDVNDDVRRAAVESLGFILFRTPE R L L R R A 1 2 1 3 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 4 0 0 15 1 1706.9064 A0A087WW66;Q99460;H7C378 A0A087WW66 602 616 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2;3;4 1.5878E-07 129.85 By MS/MS By MS/MS By MS/MS By matching 6 3 1 2 1.1501 1.1665 14.168 11 Median 1.0516 1.1684 15.594 6 0 Median 1.1918 1.149 2.1386 2 1 Median NaN NaN NaN 0 0 Median 1.2386 1.2126 NaN 1 0 Median 0.98572 1.071 25.944 2 0 Median NaN NaN NaN 0 0 Median 83702000 38974000 44728000 59082000 28043000 31040000 18480000 7927300 10553000 0 0 0 1312500 616550 695980 4826900 2387400 2439600 0 0 0 21189 54 22098 111604;111605;111606;111607;111608;111609;111610;111611;111612;111613;111614;111615 112826;112827;112828;112829;112830;112831;112832;112833;112834 112830 8 LLHVIEDRDR NLQLRVKETSNENLRLLHVIEDRDRKVESL NENLRLLHVIEDRDRKVESLLNEMKELDSK R L L D R K 0 2 0 2 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 10 1 1264.6888 P49454 P49454 1786 1795 CENPF Centromere protein F yes yes 3 0.00059556 62.303 By matching By MS/MS 1 1 0.88289 0.9476 32.613 2 Median 0.71786 0.75244 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0859 1.1934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3504300 1577200 1927100 638370 349580 288790 0 0 0 2865900 1227600 1638300 0 0 0 0 0 0 0 0 0 21190 2383 22099 111616;111617 112835;112836 112836 2 LLIAFQNR KYNTWEPEENILDPRLLIAFQNRERQEQLM ENILDPRLLIAFQNRERQEQLMGYRKRGPK R L L N R E 1 1 1 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 973.5709 O00257;I3L4F1 O00257 53 60 CBX4 E3 SUMO-protein ligase CBX4 yes no 2 0.0036575 86.086 By MS/MS By matching 1 1 0.96336 0.92014 3.9321 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90242 0.94609 NaN 1 0 Median 1.0284 0.89491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5236400 2925000 2311400 0 0 0 0 0 0 5107500 2869400 2238100 128890 55567 73323 0 0 0 0 0 0 21191 1450 22100 111618;111619 112837;112838 112838 2 LLIALLESNQQK QFAHTVNATACAVPRLLIALLESNQQKDGS VPRLLIALLESNQQKDGSVLVPPALQSYLG R L L Q K D 1 0 1 0 0 2 1 0 0 1 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1368.7977 M0QWZ7;M0R2C6;Q9NP81;M0R259;M0QX29 M0QWZ7 460 471 SARS2 Serine--tRNA ligase, mitochondrial yes no 2 0.00038451 136.57 By MS/MS By matching 1 1 1.2891 1.116 18.94 2 Median NaN NaN NaN 0 0 Median 1.4973 1.2759 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1098 0.9761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4372500 2626900 1745500 0 0 0 4185200 2532400 1652800 0 0 0 187260 94570 92692 0 0 0 0 0 0 21192 1407 22101 111620;111621 112839 112839 1 LLIDEAILK DALANLKVSQIKKVRLLIDEAILKCDAERI QIKKVRLLIDEAILKCDAERIKLEAERFEN R L L L K C 1 0 0 1 0 0 1 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6325 Q5T5C7;P49591 Q5T5C7 108 116 SARS Serine--tRNA ligase, cytoplasmic yes no 2 0.0036618 63.565 By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 3 1.1852 1.1096 15.885 9 Median 1.2377 1.1963 4.428 2 0 Median NaN NaN NaN 0 0 Median 1.158 1.1356 NaN 1 0 Median 1.2813 1.1202 12.472 2 0 Median 1.1457 1.1096 NaN 1 0 Median 1.132 0.96474 15.278 3 0 Median 19156000 9113900 10042000 8799200 4300200 4499000 0 0 0 8851400 4114800 4736700 430980 178750 252230 385750 181880 203870 688540 338300 350240 21193 2387 22102 111622;111623;111624;111625;111626;111627;111628;111629;111630 112840;112841;112842 112841 3 LLIDGDGAGDDR ______________________________ RKRLLIDGDGAGDDRRINLLVKSFIKWCNS R L L D R R 1 1 0 4 0 0 0 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1215.5731 Q6I9Y2;H7C5E3 Q6I9Y2 14 25 THOC7 THO complex subunit 7 homolog yes no 2 0.0012088 84.17 By MS/MS By MS/MS 2 1 1.0168 0.90611 5.2614 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97891 0.94046 NaN 1 1 Median 1.0561 0.87302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14717000 7524300 7192800 0 0 0 0 0 0 13427000 6866900 6560300 1289900 657400 632460 0 0 0 0 0 0 21194 3136 22103 111631;111632;111633 112843;112844;112845;112846 112843 4 LLIDGDGAGDDRR ______________________________ KRLLIDGDGAGDDRRINLLVKSFIKWCNSG R L L R R I 1 2 0 4 0 0 0 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 13 1 1371.6743 Q6I9Y2;H7C5E3 Q6I9Y2 14 26 THOC7 THO complex subunit 7 homolog yes no 2;3 7.6985E-05 87.639 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1.0043 0.96524 24.273 8 Median 0.92202 0.92548 46.198 2 0 Median 1.3119 1.1142 NaN 1 0 Median 0.86636 0.89828 18.42 2 0 Median 0.92479 0.82807 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2363 1.1013 26.907 2 0 Median 51103000 26739000 24364000 1950500 859050 1091400 2207900 1070200 1137800 33933000 17568000 16366000 11219000 6465000 4753500 0 0 0 1792500 777270 1015200 21195 3136 22104 111634;111635;111636;111637;111638;111639;111640;111641 112847;112848;112849;112850;112851;112852 112847 6 LLIEMEQR FSEVELVQMVVDGVKLLIEMEQRLEQGQAI MVVDGVKLLIEMEQRLEQGQAIDDLMPAQK K L L Q R L 0 1 0 0 0 1 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1030.5481 P12277;H0YJG0 P12277 359 366 CKB Creatine kinase B-type yes no 2 5.9291E-05 129.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 5 1 1 1 1 0.9917 0.92655 32.504 13 Median 0.83985 0.84387 18.829 4 1 Median 1.1335 0.98593 7.2184 5 1 Median 0.9961 1.0932 NaN 1 0 Median 0.37137 0.31604 NaN 1 1 Median 0.86528 0.92655 NaN 1 0 Median 0.9917 0.87372 NaN 1 0 Median 487730000 262620000 225100000 354670000 195190000 159480000 75907000 35596000 40311000 47863000 24859000 23004000 6054200 5217800 836370 2846600 1562800 1283800 385050 194890 190160 21196 1980 22105;22106 111642;111643;111644;111645;111646;111647;111648;111649;111650;111651;111652;111653;111654 112853;112854;112855;112856;112857;112858;112859;112860;112861;112862;112863;112864;112865;112866;112867 112859 761 15 LLIESLEK DVVLPALHFHQGDSKLLIESLEKYVVLCES FHQGDSKLLIESLEKYVVLCESPQDKRTLL K L L E K Y 0 0 0 0 0 0 2 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 943.559 Q8TC07;C9JA93;F8VV61 Q8TC07 172 179 TBC1D15 TBC1 domain family member 15 yes no 2 0.0082924 63.48 By MS/MS By matching By matching 2 1 2 1.1166 1.0918 38.646 5 Median 0.95999 0.93022 22.65 2 0 Median 0.63637 0.55139 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5696 1.3532 4.3408 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8247200 4400200 3847000 6601100 3659700 2941400 664330 360280 304060 0 0 0 981760 380230 601540 0 0 0 0 0 0 21197 3463 22107 111655;111656;111657;111658;111659 112868;112869;112870 112868 3 LLIGEPR PSSHEMRGGPLGDPRLLIGEPRGPMIDQRG GGPLGDPRLLIGEPRGPMIDQRGLPMDGRG R L L P R G 0 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 7 0 796.48069 Q9H0L4 Q9H0L4 390 396 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 0.052693 51.787 By MS/MS 1 0.97439 1.0264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97439 1.0264 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046000 339680 3706300 0 0 0 0 0 0 4046000 339680 3706300 0 0 0 0 0 0 0 0 0 21198 3927 22108 111660 112871 112871 1 LLIGTLYHR SVLQGSSVASVYDGKLLIGTLYHRALYCEL SVYDGKLLIGTLYHRALYCEL_________ K L L H R A 0 1 0 0 0 0 0 1 1 1 3 0 0 0 0 0 1 0 1 0 0 0 9 0 1084.6393 A0A0J9YXF2;Q15165 A0A0J9YXF2 361 369 PON2 Serum paraoxonase/arylesterase 2 yes no 2 0.00046424 124.08 By MS/MS By matching 1 1 1.2916 1.1883 13.211 2 Median 1.3168 1.3046 NaN 1 0 Median 1.2669 1.0823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7117200 3867100 3250100 5704300 3220600 2483600 1413000 646480 766520 0 0 0 0 0 0 0 0 0 0 0 0 21199 293 22109 111661;111662 112872;112873 112873 2 LLIHLHPR TASPRKENVHRHALRLLIHLHPRVAPSKLE VHRHALRLLIHLHPRVAPSKLEALQKALEP R L L P R V 0 1 0 0 0 0 0 0 2 1 3 0 0 0 1 0 0 0 0 0 0 0 8 0 997.61852 Q8WX92 Q8WX92 507 514 NELFB Negative elongation factor B yes yes 2 0.008475 62.714 By MS/MS By matching 1 1 0.99306 0.84733 15.709 2 Median NaN NaN NaN 0 0 Median 0.87512 0.75825 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1269 0.94688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5148200 2680100 2468100 0 0 0 4485800 2384500 2101300 0 0 0 662450 295690 366760 0 0 0 0 0 0 21200 3514 22110 111663;111664 112874;112875 112875 2 LLIHQSLAGGIIGVK NYQHYKGSDFDCELRLLIHQSLAGGIIGVK LLIHQSLAGGIIGVKGAKIKELRENTQTTI R L L V K G 1 0 0 0 0 1 0 3 1 3 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1517.9293 P61978;Q5T6W2 P61978 149 163 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 2.112E-10 158.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 8 4 11 7 10 2 1.1242 1.0988 11.629 42 Median 1.2273 1.1454 17.215 8 0 Median 1.3317 1.133 7.382 4 0 Median 1.0991 1.0481 6.6459 11 0 Median 1.3342 1.1471 15.681 7 0 Median 1.0606 1.0886 8.4963 10 0 Median 1.2297 1.0044 6.0698 2 0 Median 1964200000 914170000 1050100000 80069000 36631000 43438000 6580700 2887500 3693100 1196400000 569320000 627040000 361600000 151930000 209670000 308720000 148770000 159960000 10919000 4642300 6277100 21201 2565;3093 22111 111665;111666;111667;111668;111669;111670;111671;111672;111673;111674;111675;111676;111677;111678;111679;111680;111681;111682;111683;111684;111685;111686;111687;111688;111689;111690;111691;111692;111693;111694;111695;111696;111697;111698;111699;111700;111701;111702;111703;111704;111705;111706 112876;112877;112878;112879;112880;112881;112882;112883;112884;112885;112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896;112897;112898;112899;112900;112901;112902;112903;112904;112905;112906;112907;112908;112909;112910;112911;112912;112913;112914;112915;112916;112917;112918;112919;112920;112921;112922;112923;112924;112925;112926;112927;112928;112929;112930;112931;112932;112933;112934;112935;112936 112888 61 LLIHQSLAGGIIGVKGAK NYQHYKGSDFDCELRLLIHQSLAGGIIGVK HQSLAGGIIGVKGAKIKELRENTQTTIKLF R L L A K I 2 0 0 0 0 1 0 4 1 3 3 2 0 0 0 1 0 0 0 1 0 0 18 1 1774.0829 P61978;Q5T6W2 P61978 149 166 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 3 0.00075935 33.308 By MS/MS 1 1.1309 1.1821 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1309 1.1821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8265100 3809400 4455700 0 0 0 0 0 0 8265100 3809400 4455700 0 0 0 0 0 0 0 0 0 21202 2565;3093 22112 111707 112937 112937 1 LLILADMADVYK NMVRAARALLSAVTRLLILADMADVYKLLV VTRLLILADMADVYKLLVQLKVVEDGILKL R L L Y K L 2 0 0 2 0 0 0 0 0 1 3 1 1 0 0 0 0 0 1 1 0 0 12 0 1363.7421 P35221;G3XAM7;E5RIB1;E5RG03;E5RJ41 P35221 138 149 CTNNA1 Catenin alpha-1 yes no 2 2.5339E-05 96.89 By MS/MS By matching By matching 3 1 1 1.0691 0.94297 35.562 5 Median NaN NaN NaN 0 0 Median 1.0691 0.95265 44.587 3 0 Median 0.80449 0.85179 NaN 1 0 Median 1.0711 0.94297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9504900 4350300 5154600 0 0 0 7529800 3307900 4222000 1868100 998480 869570 106970 43934 63035 0 0 0 0 0 0 21203 2232 22113 111708;111709;111710;111711;111712 112938;112939 112938 2 LLILALER SPIPFPPLSYKHDTKLLILALERLKEAYSV SYKHDTKLLILALERLKEAYSVKSRLNQSQ K L L E R L 1 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 8 0 939.6117 Q6P2Q9;I3L0J9 Q6P2Q9 838 845 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0023085 111.82 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 1 1.1613 1.0954 10.251 12 Median 1.1613 1.1343 5.5168 2 0 Median 1.2377 1.0998 13.669 3 0 Median 0.87491 0.96571 8.0244 2 0 Median 1.2978 1.1316 13.193 2 0 Median 1.1131 1.1656 4.0616 2 0 Median 1.2175 1.022 NaN 1 0 Median 36250000 16923000 19327000 7053700 3168600 3885100 7250300 2964300 4286000 9899200 4969900 4929300 757530 310780 446750 11041000 5400700 5640300 247990 108820 139170 21204 3157 22114 111713;111714;111715;111716;111717;111718;111719;111720;111721;111722;111723;111724 112940;112941;112942;112943;112944;112945;112946;112947;112948 112945 9 LLILEYAR FNILIKPETLAKDVRLLILEYARWSMIDKY TLAKDVRLLILEYARWSMIDKYQALMDGLS R L L A R W 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 8 0 989.59097 O43847;G3V1R5;F5H7V1;H0Y5G9 O43847 818 825 NRD1 Nardilysin yes no 2 0.011909 56.011 By MS/MS By matching By matching 1 2 1 1.3468 1.369 12.235 4 Median 1.3259 1.2821 NaN 1 0 Median 1.4769 1.2975 18.285 2 0 Median 1.368 1.4617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6444300 2700800 3743500 4079700 1727500 2352300 1848400 769130 1079200 516260 204240 312020 0 0 0 0 0 0 0 0 0 21205 1597 22115 111725;111726;111727;111728 112949;112950 112949 2 LLILMEAR PEMQYVKIKDVARGRLLILMEARLSALYKL KDVARGRLLILMEARLSALYKLESDYEILE R L L A R L 1 1 0 0 0 0 1 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 8 0 957.56812 P41252;A0A0A0MSX9;J3KR24;Q5TCD1 P41252 255 262 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.01208 55.676 By MS/MS By matching By MS/MS By matching 1 2 2 1 1.2003 1.1026 23.56 6 Median 1.1907 1.151 NaN 1 0 Median 1.2242 1.0559 0.040366 2 0 Median 1.3602 1.4952 24.101 2 0 Median 0.99393 0.88512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13036000 5902800 7133500 6007400 2948800 3058600 5117100 2107800 3009300 1799600 790310 1009300 112020 55853 56171 0 0 0 0 0 0 21206 2302 22116 111729;111730;111731;111732;111733;111734 112951;112952;112953 112951 3 LLINAHEQQTQQLK IRDLHLSQQCELLKKLLINAHEQQTQQLKL KLLINAHEQQTQQLKLSHDRESKEMRAHQA K L L L K L 1 0 1 0 0 4 1 0 1 1 3 1 0 0 0 0 1 0 0 0 0 0 14 0 1662.9053 Q15147 Q15147 1053 1066 PLCB4 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 yes yes 3 1.1156E-07 116.51 By MS/MS 1 1.5311 1.3242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5311 1.3242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5209600 1921600 3288000 0 0 0 0 0 0 0 0 0 5209600 1921600 3288000 0 0 0 0 0 0 21207 2932 22117 111735 112954;112955 112954 2 LLIPVAEGMNEIWLR VTPDVNISGQKFNIKLLIPVAEGMNEIWLR LLIPVAEGMNEIWLRCDNEKQYAHWMAACR K L L L R C 1 1 1 0 0 0 2 1 0 2 3 0 1 0 1 0 0 1 0 1 0 0 15 0 1752.9597 H0YJ34;Q96AC1;A0A0U1RRM8 H0YJ34 396 410 FERMT2 Fermitin family homolog 2 yes no 2 0.00080094 45.973 By MS/MS 2 0.94983 0.95241 0.21134 2 Median 0.94983 0.95241 0.21134 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2241700 1176000 1065700 2241700 1176000 1065700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21208 1184 22118 111736;111737 112956;112957;112958 112958 3 LLIQAAIVR QEQETTHKNIEEDRKLLIQAAIVRIMKMRK IEEDRKLLIQAAIVRIMKMRKVLKHQQLLG K L L V R I 2 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 995.64915 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJC4 A0A0C4DGX4 685 693 CUL1 Cullin-1 yes no 2 0.00091162 91.041 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.0995 1.018 11.363 6 Median 0.95287 0.913 NaN 1 0 Median 1.0523 0.93824 NaN 1 0 Median 0.98527 1.0469 NaN 1 0 Median 1.1489 0.98997 NaN 1 0 Median 1.1573 1.2345 NaN 1 0 Median 1.3282 1.1185 NaN 1 0 Median 18500000 9144700 9355400 4908900 2545900 2363100 1115400 500510 614880 8906900 4503200 4403700 2241900 1026600 1215300 1102400 476540 625880 224560 91943 132610 21209 256 22119 111738;111739;111740;111741;111742;111743 112959;112960;112961;112962 112961 4 LLIQESVWDEAMR VVDAAWSDRGPGGLRLLIQESVWDEAMRRL LRLLIQESVWDEAMRRLQERMGRLRSGRGL R L L M R R 1 1 0 1 0 1 2 0 0 1 2 0 1 0 0 1 0 1 0 1 0 0 13 0 1588.7919 Q8IZ83;F5H4B6 Q8IZ83 309 321 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 2 5.2801E-05 87.913 By MS/MS By matching 1 1 0.77464 0.76767 23.733 2 Median 0.93331 0.90793 NaN 1 0 Median 0.64294 0.64907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5168100 3033600 2134500 3197400 1627300 1570100 1970600 1406200 564420 0 0 0 0 0 0 0 0 0 0 0 0 21210 3348 22120 111744;111745 112963;112964 112963 2 LLIQVGHEPMPPTLGTNVLGR GAGVTALSHPLLYVKLLIQVGHEPMPPTLG HEPMPPTLGTNVLGRKVLYLPSFFTYAKYI K L L G R K 0 1 1 0 0 1 1 3 1 1 4 0 1 0 3 0 2 0 0 2 0 0 21 0 2241.2304 H0Y8C3;Q9NZJ7 H0Y8C3 88 108 MTCH1 Mitochondrial carrier homolog 1 yes no 3 6.7334E-12 67.43 By MS/MS By MS/MS By MS/MS 2 2 1 1.0151 0.85588 29.785 5 Median 0.61272 0.59785 0.61958 2 0 Median 1.0153 0.86162 0.94499 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4242 1.2142 NaN 1 1 Median 14626000 8028400 6597400 9601800 5660500 3941300 3844200 1946900 1897300 0 0 0 0 0 0 0 0 0 1179700 420900 758810 21211 1161 22121 111746;111747;111748;111749;111750 112965;112966;112967;112968;112969 112966 5 LLISLSQGNR LEEAIRSDTSGHFQRLLISLSQGNRDESTN GHFQRLLISLSQGNRDESTNVDMSLAQRDA R L L N R D 0 1 1 0 0 1 0 1 0 1 3 0 0 0 0 2 0 0 0 0 0 0 10 0 1099.635 P50995 P50995 337 346 ANXA11 Annexin A11 yes yes 2 0.0057065 50.04 By MS/MS By MS/MS 1 1 1.4395 1.2366 3.6227 2 Median NaN NaN NaN 0 0 Median 1.4006 1.2053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4795 1.2687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5992400 2684600 3307800 0 0 0 2314500 1207100 1107400 0 0 0 3677900 1477500 2200400 0 0 0 0 0 0 21212 2425 22122 111751;111752 112970;112971;112972 112972 3 LLITGTEQFNQKPK LPDPRELIEIKNKKKLLITGTEQFNQKPKK KLLITGTEQFNQKPKKGIQFLQEKGLLTIP K L L P K K 0 0 1 0 0 2 1 1 0 1 2 2 0 1 1 0 2 0 0 0 0 0 14 1 1615.8934 Q92538 Q92538 702 715 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2;3 0.00012539 93.096 By MS/MS By MS/MS 1 2 1.1281 0.97634 14.971 3 Plateau 1.2712 1.26 NaN 1 0 Median 1.0004 0.97228 0.58909 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7918600 3719700 4198900 4091100 1848600 2242400 3827500 1871100 1956400 0 0 0 0 0 0 0 0 0 0 0 0 21213 3533 22123 111753;111754;111755 112973;112974 112974 1 LLITGTPLQNSLK SLLYKTLIDFKSNHRLLITGTPLQNSLKEL HRLLITGTPLQNSLKELWSLLHFIMPEKFS R L L L K E 0 0 1 0 0 1 0 1 0 1 4 1 0 0 1 1 2 0 0 0 0 0 13 0 1396.829 O14647;A0A1B0GTU9;O14646 O14646 639 651 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 5.1709E-07 107.24 By matching By MS/MS By MS/MS 1 1 1 1.0664 1.1165 26.058 3 Plateau NaN NaN NaN 0 0 Median 0.75314 0.66411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0664 1.1165 NaN 1 0 Median 1.0388 0.89254 NaN 1 0 Median 7296000 3641600 3654400 0 0 0 173840 106710 67131 0 0 0 0 0 0 6361800 3165300 3196500 760340 369600 390740 21214 1486;321 22124 111756;111757;111758 112975;112976;112977 112975 3 LLIVSTTPYSEK SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK LDRLLIVSTTPYSEKDTKQILRIRCEEEDV R L L E K D 0 0 0 0 0 0 1 0 0 1 2 1 0 0 1 2 2 0 1 1 0 0 12 0 1349.7442 Q9Y230;M0R0Y3 Q9Y230 354 365 RUVBL2 RuvB-like 2 yes no 2 3.0793E-06 129.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1 0.96745 0.88136 29.178 9 Median 0.96745 0.89143 NaN 1 0 Median 1.0757 0.91659 3.2532 2 0 Median 0.86922 0.8352 1.7446 2 0 Median 1.0711 0.92132 51.584 3 0 Plateau 0.83911 0.80098 NaN 1 0 Median NaN NaN NaN 0 0 Median 216680000 108120000 108560000 29311000 14458000 14853000 16488000 7835700 8652400 124890000 62210000 62677000 33830000 17187000 16643000 12167000 6433100 5734100 0 0 0 21215 4368 22125 111759;111760;111761;111762;111763;111764;111765;111766;111767 112978;112979;112980;112981;112982;112983;112984;112985;112986;112987;112988;112989;112990;112991 112980 14 LLIVSTTPYSEKDTK SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK LLIVSTTPYSEKDTKQILRIRCEEEDVEMS R L L T K Q 0 0 0 1 0 0 1 0 0 1 2 2 0 0 1 2 3 0 1 1 0 0 15 1 1693.9138 Q9Y230;M0R0Y3 Q9Y230 354 368 RUVBL2 RuvB-like 2 yes no 2;3 1.1274E-09 146.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 3 2 1.1755 1.1349 12.343 13 Median 1.338 1.273 0.50537 2 0 Median NaN NaN NaN 0 0 Median 0.949 0.98278 22.163 3 0 Median 1.1755 1.1367 7.5545 3 0 Median 1.0348 1.0895 9.9731 3 0 Median 1.2555 1.119 7.9233 2 0 Median 212240000 99244000 112990000 60785000 25349000 35436000 0 0 0 70967000 35586000 35381000 40710000 18650000 22059000 33634000 16697000 16938000 6142800 2962800 3180000 21216 4368 22126 111768;111769;111770;111771;111772;111773;111774;111775;111776;111777;111778;111779;111780 112992;112993;112994;112995;112996;112997;112998;112999;113000;113001;113002;113003;113004;113005 112999 14 LLIYAILPDGEVVGDSAR SMSVPVESDIAPVARLLIYAILPDGEVVGD YAILPDGEVVGDSARYEIEHCLANKVGLNF R L L A R Y 2 1 0 2 0 0 1 2 0 2 3 0 0 0 1 1 0 0 1 2 0 0 18 0 1900.0306 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 540 557 yes yes 2 0.0080201 43.084 By MS/MS By MS/MS 2 1 0.3034 0.25601 81.092 3 Median 0.43105 0.43013 106.57 2 2 Median 0.3034 0.25601 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4763400 3582000 1181400 2455000 1696400 758600 2308400 1885500 422840 0 0 0 0 0 0 0 0 0 0 0 0 + 21217 734 22127 111781;111782;111783 113006;113007;113008 113007 3 LLIYETEAK VLDEEAEVFIVKMWRLLIYETEAKKIGLVK IVKMWRLLIYETEAKKIGLVK_________ R L L A K K 1 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 9 0 1078.591 P49756 P49756 829 837 RBM25 RNA-binding protein 25 yes yes 2 0.001269 95.741 By MS/MS 2 0.92984 0.99316 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92984 0.99316 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12025000 6135800 5888900 0 0 0 0 0 0 12025000 6135800 5888900 0 0 0 0 0 0 0 0 0 21218 2397 22128 111784;111785 113009;113010 113009 2 LLIYETEAKK VLDEEAEVFIVKMWRLLIYETEAKKIGLVK VKMWRLLIYETEAKKIGLVK__________ R L L K K I 1 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 1 0 1 0 0 0 10 1 1206.686 P49756 P49756 829 838 RBM25 RNA-binding protein 25 yes yes 2;3 0.00074528 99.802 By MS/MS By matching By matching 4 1 1 0.97608 1.1079 25.49 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8562 0.98704 29.374 4 1 Median NaN NaN NaN 0 0 Median 1.0442 1.1688 NaN 1 0 Median 1.628 1.4757 NaN 1 0 Median 23548000 11394000 12154000 0 0 0 0 0 0 20538000 9962100 10576000 0 0 0 2426100 1206100 1220000 583140 225290 357850 21219 2397 22129 111786;111787;111788;111789;111790;111791 113011;113012;113013;113014;113015 113012 5 LLKDAEALSQR DDLGTIESLEEAKKKLLKDAEALSQRLEEK AKKKLLKDAEALSQRLEEKALAYDKLEKTK K L L Q R L 2 1 0 1 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 1 1242.6932 P35580 P35580 1397 1407 MYH10 Myosin-10 yes yes 2;3 0.00090737 107.79 By MS/MS By MS/MS 3 1 1.172 1.1853 17.435 4 Median 1.237 1.259 10.875 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0415 0.92514 NaN 1 0 Median 23288000 10412000 12876000 20761000 9336900 11424000 0 0 0 0 0 0 0 0 0 0 0 0 2527100 1075600 1451500 21220 2245 22130 111792;111793;111794;111795 113016;113017;113018;113019 113018 3 LLKDGIQLSEYLPEVK IEVSKDSIFVKILQKLLKDGIQLSEYLPEV LKDGIQLSEYLPEVKDLLQADQLGSLKSNP K L L V K D 0 0 0 1 0 1 2 1 0 1 4 2 0 0 1 1 0 0 1 1 0 0 16 1 1844.0295 Q8WUM0 Q8WUM0 1108 1123 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.067238 10.057 By matching By MS/MS 1 1 0.83481 0.92135 8.4031 2 Median 0.81575 0.8682 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85432 0.97775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3638900 1886200 1752700 308780 154720 154060 0 0 0 3330200 1731500 1598700 0 0 0 0 0 0 0 0 0 21221 3492 22131 111796;111797 113020 113020 1 LLKEEKEELADQVLTLK FKLMSERIKSNQIHKLLKEEKEELADQVLT KEEKEELADQVLTLKTQVDAQLQVVRKLEE K L L L K T 1 0 0 1 0 1 4 0 0 0 5 3 0 0 0 0 1 0 0 1 0 0 17 2 1998.1249 Q5VTR2 Q5VTR2 776 792 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 8.5967E-06 57.52 By matching By MS/MS 1 1 0.82944 0.93091 36.38 2 Median 1.1486 1.204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59898 0.71976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14489000 7987200 6501700 1924700 985790 938910 0 0 0 12564000 7001400 5562800 0 0 0 0 0 0 0 0 0 21222 3112 22132 111798;111799 113021 113021 1 LLKEYQELMNVK GLEDALQKAKQDLARLLKEYQELMNVKLAL LARLLKEYQELMNVKLALDVEIATYRKLLE R L L V K L 0 0 1 0 0 1 2 0 0 0 3 2 1 0 0 0 0 0 1 1 0 0 12 1 1506.8116 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 444 455 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0022984 93.111 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4519600 4519600 0 0 0 0 0 0 0 4519600 4519600 0 0 0 0 0 0 0 0 0 0 + 21223 741;748;766 22133 111800 113022 113022 1 LLLAALGR CETKKAYFLGYMVHRLLLAALGRRELDDRD LGYMVHRLLLAALGRRELDDRDHYGNKRLD R L L G R R 2 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 825.54362 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 365 372 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0051629 77.374 By matching By matching By matching By matching By MS/MS By matching 1 2 1 1 2 1 1.1224 1.0952 12.308 8 Median 1.2239 1.2179 NaN 1 0 Median 1.2618 1.112 26.052 2 0 Median 1.0072 1.0921 NaN 1 0 Median 1.4361 1.2285 NaN 1 0 Median 0.95985 1.0107 3.709 2 0 Median 1.3211 1.0984 NaN 1 0 Median 9739900 4598500 5141400 1676800 765430 911380 1690300 668740 1021500 1365300 686610 678700 703990 278480 425510 3989600 2066600 1923100 313850 132640 181210 21224 671 22134 111801;111802;111803;111804;111805;111806;111807;111808 113023;113024 113024 2 LLLAFQK KHNSWEPEENILDPRLLLAFQKKEHEKEVQ EENILDPRLLLAFQKKEHEKEVQNRKRGKR R L L Q K K 1 0 0 0 0 1 0 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 831.52182 Q14781 Q14781 54 60 CBX2 Chromobox protein homolog 2 yes yes 2 0.019054 61.997 By MS/MS By matching 1 1 0.9531 0.91016 25.377 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0249 1.089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88637 0.76066 NaN 1 0 Median 2856800 1445500 1411300 0 0 0 0 0 0 2672800 1357500 1315300 0 0 0 0 0 0 183980 88028 95954 21225 2899 22135 111809;111810 113025;113026 113026 2 LLLAIVGQ LGTMIAGDTSGDYRRLLLAIVGQ_______ TSGDYRRLLLAIVGQ_______________ R L L G Q - 1 0 0 0 0 1 0 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 8 0 825.53239 P20073 P20073 481 488 ANXA7 Annexin A7 yes yes 1 0.042715 56.026 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055400 0 0 0 0 0 0 0 0 6055400 0 0 0 0 0 0 0 0 0 0 0 21226 2073 22136 111811 113027 113027 1 LLLDEITR KAIARFFPKPYDDSRLLLDEITRAQDLFLD KPYDDSRLLLDEITRAQDLFLDGVPLRKTI R L L T R A 0 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 971.56515 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2769 2776 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.044676 35.88 By matching By MS/MS By matching 1 1 1 0.82202 0.80696 30.62 3 Median 0.82202 0.80696 NaN 1 0 Median 1.5412 1.2945 NaN 1 0 Median 0.65005 0.7294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17219000 8510600 8708100 10240000 5705000 4535400 5451100 1918400 3532700 1527200 887160 640000 0 0 0 0 0 0 0 0 0 21227 189 22137 111812;111813;111814 113028;113029 113028 2 LLLDIPLQTPHK ELAEEFKQKFEECQRLLLDIPLQTPHKLVD CQRLLLDIPLQTPHKLVDTGRAAKLIQRAE R L L H K L 0 0 0 1 0 1 0 0 1 1 4 1 0 0 2 0 1 0 0 0 0 0 12 0 1386.8235 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q99666;J3KQ37;O14715 P49792 2145 2156 RANBP2;RGPD1;RGPD2;RGPD3;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2;3 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS By matching 2 4 3 1 0.83998 0.77523 20.082 10 Median 0.96883 0.93447 17.244 2 0 Median 0.89817 0.7896 28.345 4 0 Median 0.7334 0.78088 2.9398 3 0 Plateau 0.80369 0.73998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85165000 47125000 38040000 4226000 2228300 1997800 21074000 10815000 10259000 59442000 33828000 25614000 422930 254490 168440 0 0 0 0 0 0 21228 2401;525;3762 22138 111815;111816;111817;111818;111819;111820;111821;111822;111823;111824 113030;113031;113032;113033;113034;113035;113036;113037;113038;113039 113035 10 LLLDMYK RAELKKAQESQKEMKLLLDMYKSAPKEQRD QESQKEMKLLLDMYKSAPKEQRDKVQLMAA K L L Y K S 0 0 0 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 1 0 0 0 7 0 894.48848 O75150;H3BP71 O75150 671 677 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.026776 52.683 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.073 1.0322 16.705 4 Median 1.2187 1.2178 NaN 1 1 Median 0.98783 0.84484 NaN 1 0 Median 1.0429 1.1306 NaN 1 0 Median 1.1039 0.94245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7574200 3616100 3958100 1935900 958570 977320 1197900 593680 604190 4087200 1914900 2172200 353330 148930 204400 0 0 0 0 0 0 21229 1648 22139 111825;111826;111827;111828 113040;113041;113042 113042 3 LLLDMYR KIELKKAQESQKEMKLLLDMYRSAPKEQRD QESQKEMKLLLDMYRSAPKEQRDKVQLMAA K L L Y R S 0 1 0 1 0 0 0 0 0 0 3 0 1 0 0 0 0 0 1 0 0 0 7 0 922.49462 Q5VTR2 Q5VTR2 645 651 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.018479 62.714 By MS/MS By matching 1 1 1.1624 1.1404 9.8181 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1121 1.2224 NaN 1 0 Median 1.215 1.0639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3911800 1696700 2215200 0 0 0 0 0 0 3646300 1571200 2075000 265590 125450 140130 0 0 0 0 0 0 21230 3112 22140 111829;111830 113043;113044 113044 2 LLLDNTQIMNALQK ERTSGNSQREYQLMKLLLDNTQIMNALQKY KLLLDNTQIMNALQKYPNCPTDVRQWATSS K L L Q K Y 1 0 2 1 0 2 0 0 0 1 4 1 1 0 0 0 1 0 0 0 0 0 14 0 1613.8811 O43929 O43929 404 417 ORC4 Origin recognition complex subunit 4 no no 2 1.7301E-05 138.66 By matching By MS/MS By matching By matching By matching 1 2 1 2 2 1.0126 0.88847 20.036 8 Median NaN NaN NaN 0 0 Median 0.91901 0.85846 NaN 1 0 Median 1.1107 1.1494 27.582 2 1 Median 1.2115 1.081 NaN 1 0 Median 0.77794 0.76115 4.0595 2 0 Median 1.0619 0.88847 0.6406 2 0 Median 34511000 16513000 17998000 0 0 0 255670 131990 123680 31118000 14822000 16296000 523730 244190 279540 1455500 785680 669810 1157600 528900 628730 + 21231 1602 22141 111831;111832;111833;111834;111835;111836;111837;111838 113045;113046;113047 113046 3 LLLDPSSPPTK SSENEDSDQDREERKLLLDPSSPPTKALNG EERKLLLDPSSPPTKALNGAEPNYHSLPSA K L L T K A 0 0 0 1 0 0 0 0 0 0 3 1 0 0 3 2 1 0 0 0 0 0 11 0 1166.6547 Q6IAA8;F5GX19;F5H3Y3;H0YFI1;F5H479 Q6IAA8 21 31 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 2 0.0054074 46.158 By MS/MS 1 0.80751 0.69383 NaN 1 Median NaN NaN NaN 0 0 Median 0.80751 0.69383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3497800 1806600 1691200 0 0 0 3497800 1806600 1691200 0 0 0 0 0 0 0 0 0 0 0 0 21232 3137 22142 111839 113048 113048 1 LLLDQEQK DRAQKAFEAVDKAYKLLLDQEQKKRALDVI AVDKAYKLLLDQEQKKRALDVIQAGKEYVE K L L Q K K 0 0 0 1 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 985.54441 O75937 O75937 109 116 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.0023526 134.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 1.1086 0.9656 12.937 9 Median 1.0459 0.9961 14.202 2 0 Median 1.175 0.99941 6.3053 2 0 Median 1.1262 1.0859 NaN 1 0 Median 1.0258 0.84958 21.848 2 0 Median 0.9654 0.9656 NaN 1 0 Median 1.0581 0.86236 NaN 1 0 Median 159570000 74004000 85565000 14038000 6030600 8007600 20584000 8921900 11662000 35124000 17823000 17300000 77104000 34857000 42247000 8282900 4170300 4112600 4436800 2201900 2234800 21233 1709 22143 111840;111841;111842;111843;111844;111845;111846;111847;111848 113049;113050;113051;113052;113053;113054;113055;113056;113057 113054 9 LLLDTFEYQGLVK TFQKRQKLTSEGAAKLLLDTFEYQGLVKHT AKLLLDTFEYQGLVKHTGGCHCGAVRFEVW K L L V K H 0 0 0 1 0 1 1 1 0 0 4 1 0 1 0 0 1 0 1 1 0 0 13 0 1537.8392 A0A0M3HER2;Q7Z7K6 Q7Z7K6 135 147 CENPV Centromere protein V no no 2 5.5716E-05 87.328 By matching By MS/MS By matching 1 2 2 1.1289 0.9451 32.135 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1499 1.7347 NaN 1 0 Median 0.79147 0.80078 8.1591 2 0 Median 1.1438 0.95576 1.5861 2 0 Median 28026000 14398000 13628000 0 0 0 0 0 0 0 0 0 148940 40518 108420 24213000 12678000 11536000 3663400 1679600 1983800 21234 3261;296 22144 111849;111850;111851;111852;111853 113058;113059;113060 113058 3 LLLDTLQLSK EDLEEAGVQDPAHKRLLLDTLQLSK_____ PAHKRLLLDTLQLSK_______________ R L L S K - 0 0 0 1 0 1 0 0 0 0 5 1 0 0 0 1 1 0 0 0 0 0 10 0 1142.6911 O15357;H7BXR2 O15357 1249 1258 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.014222 39.022 By MS/MS By matching By matching By matching 2 1 1 1 1.0587 1.0167 10.174 5 Median 0.99765 0.9522 9.2696 2 0 Median 1.3548 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2506 1.0511 NaN 1 0 Median 0.98822 1.0149 NaN 1 0 Median NaN NaN NaN 0 0 Median 9231300 4086400 5144900 5324500 2364900 2959600 2483200 1058700 1424500 0 0 0 707850 298310 409550 715750 364560 351190 0 0 0 21235 1539 22145 111854;111855;111856;111857;111858 113061 113061 1 LLLEDLVK DWKTSRTFFYWRLRRLLLEDLVKKKIHNAN FYWRLRRLLLEDLVKKKIHNANPELTDGQI R L L V K K 0 0 0 1 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 8 0 941.57973 Q13085;Q59FY4 Q13085 2222 2229 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.011256 57.281 By MS/MS By matching 2 1 1.3821 1.3088 19.987 3 Median 1.1374 1.103 24.193 2 0 Median 1.4575 1.3193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5647900 2731900 2916000 5497300 2680500 2816700 150580 51340 99243 0 0 0 0 0 0 0 0 0 0 0 0 21236 2784 22146 111859;111860;111861 113062;113063 113062 2 LLLEEDENEESGSIKR ECLAEEIKIGDYYLRLLLEEDENEESGSIK LLEEDENEESGSIKRSYEFFNELYHRFLLT R L L K R S 0 1 1 1 0 0 5 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 16 1 1859.9113 O75165 O75165 834 849 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 3 8.9989E-07 74.816 By MS/MS 2 0.91785 0.92493 5.4786 2 Median 0.91785 0.92493 5.4786 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13452000 6999200 6453100 13452000 6999200 6453100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21237 1653 22147 111862;111863 113064;113065 113065 2 LLLEEIYR GAAVLPEDLGRNCARLLLEEIYRGGCVDST LGRNCARLLLEEIYRGGCVDSTNQSLALLL R L L Y R G 0 1 0 0 0 0 2 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 8 0 1047.5964 Q9Y2P8;Q5VZU3;Q5VZU2 Q9Y2P8 282 289 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2 0.0052175 77.058 By MS/MS By MS/MS 1 1 0.51671 0.53975 40.768 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66461 0.72009 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40172 0.40458 NaN 1 0 Median NaN NaN NaN 0 0 Median 25487000 16379000 9108400 0 0 0 0 0 0 4120000 2455700 1664400 0 0 0 21367000 13923000 7444000 0 0 0 21238 4385 22148 111864;111865 113066;113067;113068 113067 3 LLLEFTDTSYEEK VLGYWDIRGLAHAIRLLLEFTDTSYEEKRY IRLLLEFTDTSYEEKRYTCGEAPDYDRSQW R L L E K R 0 0 0 1 0 0 3 0 0 0 3 1 0 1 0 1 2 0 1 0 0 0 13 0 1586.7716 A0A0A0MTN3;P21266 A0A0A0MTN3 23 35 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.0013659 54.982 By MS/MS 1 0.8509 0.79622 NaN 1 Median 0.8509 0.79622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3684400 1759400 1925000 3684400 1759400 1925000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21239 197 22149 111866 113069;113070 113069 2 LLLEFTDTSYEEKR VLGYWDIRGLAHAIRLLLEFTDTSYEEKRY RLLLEFTDTSYEEKRYTCGEAPDYDRSQWL R L L K R Y 0 1 0 1 0 0 3 0 0 0 3 1 0 1 0 1 2 0 1 0 0 0 14 1 1742.8727 A0A0A0MTN3;P21266 A0A0A0MTN3 23 36 GSTM3 Glutathione S-transferase Mu 3 yes no 3 0.016399 22.538 By MS/MS By MS/MS 1 1 1.0876 1.075 8.5066 2 Median 1.0935 1.1417 NaN 1 0 Median 1.0817 1.0123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15983000 7885600 8097600 14467000 7186100 7281200 1515800 699510 816320 0 0 0 0 0 0 0 0 0 0 0 0 21240 197 22150 111867;111868 113071;113072 113071 2 LLLEGISSTHAHHLR RITQSEFDRQAEITRLLLEGISSTHAHHLR LLLEGISSTHAHHLRCLNDFVEAQMTYYAQ R L L L R C 1 1 0 0 0 0 1 1 3 1 4 0 0 0 0 2 1 0 0 0 0 0 15 0 1682.9216 A0A087WW40;Q9Y371 A0A087WW40 240 254 SH3GLB1 Endophilin-B1 yes no 3;4 1.9303E-06 86.291 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.2719 1.0992 23.736 7 Median 1.0478 1.0452 5.6923 2 1 Median 1.2719 1.0992 NaN 1 0 Median 1.6036 1.7436 6.126 2 1 Median 1.4236 1.2405 18.075 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52214000 23717000 28497000 27481000 13539000 13943000 3248800 1396400 1852400 16931000 6666000 10265000 4552800 2116500 2436300 0 0 0 0 0 0 21241 52 22151 111869;111870;111871;111872;111873;111874;111875 113073;113074;113075;113076;113077;113078;113079;113080 113076 8 LLLEGISSTHVNHLR RVAQTEFDRQAEVTRLLLEGISSTHVNHLR LLLEGISSTHVNHLRCLHEFVKSQTTYYAQ R L L L R C 0 1 1 0 0 0 1 1 2 1 4 0 0 0 0 2 1 0 0 1 0 0 15 0 1687.937 B7ZC38;Q9NR46;B7ZC39 B7ZC38 237 251 SH3GLB2 Endophilin-B2 yes no 2;3 4.6199E-13 101.39 By MS/MS By matching By matching By MS/MS 3 1 1 1 0.93276 0.84413 19.711 5 Median 0.84403 0.81992 10.012 2 0 Median 0.83375 0.70767 NaN 1 0 Median 1.1909 1.1845 NaN 1 0 Median 0.97544 0.84413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44794000 23983000 20812000 27140000 14751000 12389000 4619000 2707600 1911400 7181700 3419800 3761900 5853500 3104300 2749200 0 0 0 0 0 0 21242 641 22152 111876;111877;111878;111879;111880;111881 113081;113082;113083 113082 2 LLLEGVENK AELSLVFVDKPEKAKLLLEGVENKLIPGLK KPEKAKLLLEGVENKLIPGLKIIVVMDAYG K L L N K L 0 0 1 0 0 0 2 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1013.5757 E7EPM6;P33121;B7Z3Z9;D6RER0 E7EPM6 174 182 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 2 0.0071178 52.482 By MS/MS By matching By matching By matching 2 1 1 1 1.0548 1.0143 60.098 5 Median 1.2557 1.1863 22.143 2 0 Median 1.3953 1.186 NaN 1 0 Median 0.28522 0.3032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98594 0.83459 NaN 1 0 Median 17194000 7838400 9356100 9533600 4091700 5441800 4732700 1868500 2864200 2784200 1823800 960390 0 0 0 0 0 0 143950 54341 89607 21243 871 22153 111882;111883;111884;111885;111886 113084 113084 1 LLLENYEEYAAR IHPNPESALNEEAGRLLLENYEEYAARARL AGRLLLENYEEYAARARLLTEIHGGAGGPS R L L A R A 2 1 1 0 0 0 3 0 0 0 3 0 0 0 0 0 0 0 2 0 0 0 12 0 1482.7355 Q16763;K7EPJ1 Q16763 136 147 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2 6.2552E-11 139.96 By MS/MS 2 1.2028 1.1556 3.313 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2028 1.1556 3.313 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27088000 12474000 14613000 0 0 0 0 0 0 27088000 12474000 14613000 0 0 0 0 0 0 0 0 0 21244 2997 22154 111887;111888 113085;113086 113085 2 LLLEQILNK LPHVFVNCVECFTLRLLLEQILNKLNHLSS ECFTLRLLLEQILNKLNHLSSSEDGCSTEI R L L N K L 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1082.6699 O43913 O43913 71 79 ORC5 Origin recognition complex subunit 5 yes yes 2 0.018988 40.268 By matching By matching By MS/MS By matching By matching By matching 1 2 2 1 1 1 1.1075 1.0535 14.045 8 Median 1.3797 1.3573 NaN 1 0 Median 1.1651 1.0168 18.33 2 0 Median 1.0153 1.051 13.801 2 0 Median 1.1132 1.0056 NaN 1 0 Median 1.1465 1.1037 NaN 1 0 Median 1.1019 0.93297 NaN 1 0 Median 88810000 42010000 46800000 258730 112190 146540 936090 520280 415820 28572000 14204000 14369000 56722000 26080000 30641000 1257100 552910 704190 1064500 540670 523820 21245 1599 22155 111889;111890;111891;111892;111893;111894;111895;111896 113087;113088 113087 2 LLLEQMELR VEKDIENLAREELQKLLLEQMELRKKLERE REELQKLLLEQMELRKKLEREFQSLKDNFQ K L L L R K 0 1 0 0 0 1 2 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1143.6322 G3V3E1;G3V5H7;P84550 G3V3E1 829 837 SKOR1 SKI family transcriptional corepressor 1 yes no 2 0.010086 65.252 By MS/MS By MS/MS By MS/MS 1 1 1 0.2383 0.24518 329.38 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.0017 4.3616 NaN 1 1 Median 0.0070974 0.0061091 NaN 1 1 Median 0.2383 0.24518 NaN 1 1 Median NaN NaN NaN 0 0 Median 45727000 29103000 16623000 0 0 0 0 0 0 19521000 5993300 13528000 16522000 16432000 89726 9683600 6677800 3005900 0 0 0 21246 1111 22156 111897;111898;111899 113089;113090;113091 113091 375 3 LLLETHLPSK NANAVSEGVVHEDLRLLLETHLPSKKKKVL HEDLRLLLETHLPSKKKKVLLGVGDPKIGA R L L S K K 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 1 1 0 0 0 0 0 10 0 1149.6758 O00567;A0A494C128;Q5JXT2 O00567 78 87 NOP56 Nucleolar protein 56 yes no 2 0.0050538 66.568 By MS/MS By MS/MS By matching 2 5 1 1.0307 1.004 53.259 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.01 1.0138 3.1254 2 2 Median NaN NaN NaN 0 0 Median 1.0283 1.0164 65.335 5 0 Median 1.0836 0.89109 NaN 1 0 Median 65730000 32421000 33309000 0 0 0 0 0 0 34563000 17141000 17422000 0 0 0 25639000 12814000 12824000 5528600 2466000 3062600 21247 1472 22157 111900;111901;111902;111903;111904;111905;111906;111907 113092;113093;113094 113092 3 LLLETHLPSKK NANAVSEGVVHEDLRLLLETHLPSKKKKVL EDLRLLLETHLPSKKKKVLLGVGDPKIGAA R L L K K K 0 0 0 0 0 0 1 0 1 0 4 2 0 0 1 1 1 0 0 0 0 0 11 1 1277.7707 O00567;A0A494C128;Q5JXT2 O00567 78 88 NOP56 Nucleolar protein 56 yes no 3 5.0366E-05 99.215 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 6 5 1.1373 1.0691 22.092 15 Median 1.112 1.0561 NaN 1 0 Median 1.4698 1.376 NaN 1 0 Median 0.9728 1.0691 NaN 1 0 Median 1.4049 1.2972 NaN 1 0 Median 0.88026 0.9756 20.526 6 1 Median 1.687 1.4374 19.923 5 1 Median 174440000 80997000 93443000 2673900 1428000 1245900 4096200 1759900 2336300 35150000 17566000 17584000 5267800 2186800 3081000 102300000 48869000 53426000 24956000 9187200 15769000 21248 1472 22158 111908;111909;111910;111911;111912;111913;111914;111915;111916;111917;111918;111919;111920;111921;111922 113095;113096;113097;113098;113099;113100;113101;113102;113103;113104;113105;113106;113107;113108;113109;113110;113111;113112;113113;113114 113110 20 LLLEYTDSSYEEK TLGYWNIRGLAHSIRLLLEYTDSSYEEKKY IRLLLEYTDSSYEEKKYTMGDAPDYDRSQW R L L E K K 0 0 0 1 0 0 3 0 0 0 3 1 0 0 0 2 1 0 2 0 0 0 13 0 1588.7508 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7;A0A0A0MR85;H3BQT3;B9ZVX7;E7EWW9;Q03013;P09488 E9PHN7 19 31 GSTM2;GSTM4;GSTM1 Glutathione S-transferase Mu 2;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1 yes no 2 0.00010955 141.95 By MS/MS 1 0.84109 0.77776 NaN 1 Median 0.84109 0.77776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36148000 20601000 15547000 36148000 20601000 15547000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21249 935 22159 111923 113115;113116 113115 2 LLLGAGAVAYGVR GRLPAGPRGMGTALKLLLGAGAVAYGVRES LKLLLGAGAVAYGVRESVFTVEGGHRAIFF K L L V R E 3 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 0 0 1 2 0 0 13 0 1258.7398 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6;F5H0C5;F5H2D2 J3KPX7 25 37 PHB2 Prohibitin-2 yes no 2;3 7.914E-07 161.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 1 1.152 1.1211 47.581 11 Median 0.94349 0.88344 60.528 4 1 Median 1.4866 1.2575 5.1164 3 0 Median 1.0124 0.98473 18.339 2 0 Median 1.7225 1.4427 NaN 1 0 Median 1.6183 1.6968 NaN 1 0 Median NaN NaN NaN 0 0 Median 257270000 117180000 140090000 177720000 85566000 92156000 56969000 21569000 35401000 17056000 7999300 9057100 1049100 373870 675210 4472600 1675400 2797200 0 0 0 21250 1313 22160 111924;111925;111926;111927;111928;111929;111930;111931;111932;111933;111934 113117;113118;113119;113120;113121;113122;113123;113124;113125;113126;113127;113128;113129;113130;113131;113132 113118 16 LLLGDLAPVR CVVGENGAGKSTMLKLLLGDLAPVRGIRHA STMLKLLLGDLAPVRGIRHAHRNLKIGYFS K L L V R G 1 1 0 1 0 0 0 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 10 0 1065.6546 Q9NUQ8 Q9NUQ8 537 546 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 2 0.00076705 71.501 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.97927 0.88749 21.542 5 Median 0.89687 0.88964 38.158 2 0 Median 0.99625 0.88749 NaN 1 0 Median 0.97927 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73826 0.78178 NaN 1 0 Median NaN NaN NaN 0 0 Median 6916600 3485000 3431500 2607700 1378600 1229100 372990 181410 191580 3337000 1601900 1735100 0 0 0 598870 323160 275710 0 0 0 21251 4119 22161 111935;111936;111937;111938;111939 113133;113134;113135 113134 3 LLLIGDSGVGK ______________________________ YLFKLLLIGDSGVGKSCLLLRFADDTYTES K L L G K S 0 0 0 1 0 0 0 3 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1070.6336 P61026;A0A2R8YDI9;H0YLJ8;H0YL94;G3V196;A0A2R8YFB8;P59190;P61006;H0YMN7;Q9H0U4;E9PLD0;Q92928;E7END7;P62820;H0YNE9;Q92930;P51153 Q9H0U4 11 21 RAB10;RAB8B;RAB15;RAB8A;RAB1B;RAB1C;RAB1A;RAB13 Ras-related protein Rab-10;Ras-related protein Rab-15;Ras-related protein Rab-8A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A;Ras-related protein Rab-8B;Ras-related protein Rab-13 no no 2 0.00013635 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 11 3 2 3 3 1.3401 1.1601 29.879 33 Median 1.1679 1.1255 25.986 11 1 Median 1.3419 1.1601 36.647 11 2 Median 1.3067 1.2248 10.864 3 0 Median 1.3529 1.064 3.1111 2 0 Median 1.7311 1.7668 25.327 3 0 Median 1.5009 1.2809 28.128 3 0 Median 588300000 256930000 331370000 437150000 191990000 245160000 59182000 25629000 33552000 72780000 32799000 39980000 3507500 1433800 2073700 11760000 3500400 8259200 3920600 1578600 2342000 21252 3929;2540;863;2430;2535;1203 22162 111940;111941;111942;111943;111944;111945;111946;111947;111948;111949;111950;111951;111952;111953;111954;111955;111956;111957;111958;111959;111960;111961;111962;111963;111964;111965;111966;111967;111968;111969;111970;111971;111972 113136;113137;113138;113139;113140;113141;113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152;113153;113154;113155;113156;113157;113158;113159;113160;113161;113162;113163 113142 28 LLLIGNSSVGK GPRDAADQNFDYMFKLLLIGNSSVGKTSFL YMFKLLLIGNSSVGKTSFLFRYADDSFTPA K L L G K T 0 0 1 0 0 0 0 2 0 1 3 1 0 0 0 2 0 0 0 1 0 0 11 0 1099.6601 O95716 O95716 25 35 RAB3D Ras-related protein Rab-3D yes yes 2 0.00021132 98.033 By MS/MS By MS/MS 2 3 1.4716 1.25 23.549 5 Median 1.1516 1.0731 16.636 2 0 Median 1.6193 1.376 19.744 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22938000 10376000 12562000 18211000 8637900 9573300 4726900 1738600 2988300 0 0 0 0 0 0 0 0 0 0 0 0 21253 1787 22163 111973;111974;111975;111976;111977 113164;113165;113166 113164 3 LLLINNAGSLGDVSK LGALRELPRPKGLQRLLLINNAGSLGDVSK LLLINNAGSLGDVSKGFVDLSDSTQVNNYW R L L S K G 1 0 2 1 0 0 0 2 0 1 4 1 0 0 0 2 0 0 0 1 0 0 15 0 1512.8512 P35270 P35270 95 109 SPR Sepiapterin reductase yes yes 2 3.1368E-09 143.17 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2396 1.1235 42.077 6 Median 1.161 1.1057 8.8588 2 0 Median 1.0917 0.92667 20.646 2 0 Median 1.2955 1.219 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6818 2.7574 NaN 1 0 Median NaN NaN NaN 0 0 Median 57917000 24479000 33438000 38043000 16855000 21188000 9443600 3932000 5511700 6688900 2777800 3911200 0 0 0 3741900 914440 2827500 0 0 0 21254 2241 22164 111978;111979;111980;111981;111982;111983 113167;113168;113169;113170;113171;113172 113171 6 LLLIPQGAILR LYLTTNSKNPSGKGKLLLIPQGAILRATNN GKGKLLLIPQGAILRATNNANLQSGSAASG K L L L R A 1 1 0 0 0 1 0 1 0 2 4 0 0 0 1 0 0 0 0 0 0 0 11 0 1205.786 Q9ULM3 Q9ULM3 774 784 YEATS2 YEATS domain-containing protein 2 yes yes 2 0.026273 32.841 By MS/MS By matching By MS/MS 3 2 1 0.88788 0.9417 15.389 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84448 0.92898 3.6767 3 0 Median 0.94469 0.81052 28.86 2 0 Median 0.93769 0.95459 NaN 1 0 Median NaN NaN NaN 0 0 Median 3366400 1824500 1541900 0 0 0 0 0 0 2684700 1462600 1222000 189020 99216 89809 492710 262610 230100 0 0 0 21255 4326 22165 111984;111985;111986;111987;111988;111989 113173;113174;113175 113173 3 LLLIQAFRPDR SEETPATPIGQAIHRLLLIQAFRPDRLLAM AIHRLLLIQAFRPDRLLAMAHMFVSTNLGE R L L D R L 1 2 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 11 1 1340.7929 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 3990 4000 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.8146E-29 208.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 4 3 1 1 1.0724 1.0531 19.311 16 Median 1.041 1.1222 32.804 4 0 Median 1.0808 1.013 4.2201 3 0 Median 0.91198 1.0746 13.155 4 0 Median 1.1986 1.117 12.98 3 0 Median 1.3231 1.4313 NaN 1 0 Median 1.1036 0.99766 NaN 1 0 Median 85737000 43035000 42702000 39663000 19557000 20107000 6412300 3091100 3321200 36791000 19133000 17657000 1370400 638800 731630 1225000 495770 729240 275380 119620 155760 21256 2865 22166 111990;111991;111992;111993;111994;111995;111996;111997;111998;111999;112000;112001;112002;112003;112004;112005 113176;113177;113178;113179;113180;113181;113182;113183;113184;113185;113186;113187 113179 12 LLLLAGVDR FRGLSNLFLSCPIPKLLLLAGVDRLDKDLT SCPIPKLLLLAGVDRLDKDLTIGQMQGKFQ K L L D R L 1 1 0 1 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 1 0 0 9 0 968.60187 Q9Y570 Q9Y570 317 325 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.0036742 63.48 By MS/MS By matching By MS/MS By matching 2 1 2 3 1.1495 1.111 15.026 8 Median 1.2615 1.2676 9.2815 2 0 Median 1.1875 1.0225 NaN 1 0 Median 1.099 1.1403 8.3751 2 0 Median 1.1702 1.0214 15.109 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11545000 5338500 6206700 5096700 2273600 2823000 2525600 1175900 1349700 3220200 1557400 1662800 702770 331620 371150 0 0 0 0 0 0 21257 4453 22167 112006;112007;112008;112009;112010;112011;112012;112013 113188;113189;113190;113191 113189 4 LLLLDTQQEAGMLLR KKLSKAVEKRFPHDKLLLLDTQQEAGMLLR LLLLDTQQEAGMLLRQLANQKQQHLAFRDR K L L L R Q 1 1 0 1 0 2 1 1 0 0 6 0 1 0 0 0 1 0 0 0 0 0 15 0 1712.9495 Q2NL82;I3L1Q5 Q2NL82 220 234 TSR1 Pre-rRNA-processing protein TSR1 homolog yes no 2 6.3939E-08 149.23 By matching By MS/MS By matching 1 1 1 1.2417 1.15 6.8776 3 Plateau 1.1499 1.1489 NaN 1 0 Median 1.3286 1.15 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2417 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6648800 2930100 3718700 1478100 708990 769130 5090400 2178000 2912400 0 0 0 80310 43185 37125 0 0 0 0 0 0 21258 3004 22168 112014;112015;112016 113192;113193 113193 2 LLLLDTVTMQVTAR AGVFRGGHDILVRSRLLLLDTVTMQVTARS RLLLLDTVTMQVTARSLEELPVDIILASVG R L L A R S 1 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 3 0 0 2 0 0 14 0 1572.8909 Q9Y678;H0Y8X7 Q9Y678 846 859 COPG1 Coatomer subunit gamma-1 yes no 2 0.00011155 84.17 By MS/MS 1 1.0195 0.88412 NaN 1 Median NaN NaN NaN 0 0 Median 1.0195 0.88412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2614100 1361700 1252400 0 0 0 2614100 1361700 1252400 0 0 0 0 0 0 0 0 0 0 0 0 21259 4481 22169 112017 113194 113194 1 LLLLESVSGLLQPR GTGGLSAVSSGPRLRLLLLESVSGLLQPRT RLLLLESVSGLLQPRTGSAVAPVHPPNRSA R L L P R T 0 1 0 0 0 1 1 1 0 0 6 0 0 0 1 2 0 0 0 1 0 0 14 0 1536.9239 Q8IZL8;C9JFV4;I3L445;I3L1P4;I3L4M7 Q8IZL8 35 48 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2 0.00033438 73.067 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.1171 1.0508 7.0833 6 Median 1.1413 1.1367 NaN 1 0 Median 1.1479 1.0196 NaN 1 0 Median 0.91857 0.99804 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0599 1.1239 5.2408 2 0 Median 1.3135 0.98418 NaN 1 0 Median 5934900 2723000 3211900 212980 61785 151200 148760 61727 87033 1523600 769530 754090 0 0 0 1576600 780270 796330 2473000 1049700 1423300 21260 3351 22170 112018;112019;112020;112021;112022;112023 113195;113196;113197;113198;113199;113200;113201 113198 7 LLLLGAGESGK KQLQDEKMGYMCTHRLLLLGAGESGKSTIV CTHRLLLLGAGESGKSTIVKQMRILHVNGF R L L G K S 1 0 0 0 0 0 1 3 0 0 4 1 0 0 0 1 0 0 0 0 0 0 11 0 1056.6179 P04899;P09471;P08754;Q5JWF2;P63092;H0Y7F4;Q5JWE9;P38405;A0A1W2PRE1;A2A2R6;A0A087WTB6;Q5JWD1;H0Y7E8;A0A3B3IUA8;A0A1W2PRJ7;A0A087WZE5;A0A1W2PQK2;A0A1W2PS82;P11488;A8MTJ3;P19087;P63096 Q5JWF2 686 696 GNAI2;GNAO1;GNAI3;GNAS;GNAL;GNAT2;GNAT1;GNAT3;GNAI1 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 2 0.0001236 120.12 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 4 5 1 1.2607 1.2125 25.485 15 Median 0.99777 0.92904 7.0391 4 0 Median 1.1769 1.0024 NaN 1 0 Median 1.269 1.2519 9.6218 4 0 Median NaN NaN NaN 0 0 Median 1.3827 1.4813 11.806 5 0 Median 0.79792 0.65398 NaN 1 0 Median 177290000 80286000 97005000 60664000 30245000 30419000 28616000 12938000 15678000 43900000 18764000 25136000 0 0 0 43941000 18255000 25686000 170400 84116 86287 21261 2616;1855;1908;2617 22171 112024;112025;112026;112027;112028;112029;112030;112031;112032;112033;112034;112035;112036;112037;112038 113202;113203;113204;113205;113206;113207;113208;113209;113210;113211;113212;113213;113214;113215;113216 113212 15 LLLLGTGESGK KQLRRDKRDARRELKLLLLGTGESGKSTFI RELKLLLLGTGESGKSTFIKQMRIIHGAGY K L L G K S 0 0 0 0 0 0 1 3 0 0 4 1 0 0 0 1 1 0 0 0 0 0 11 0 1086.6285 P29992;P50148;O95837 P29992 42 52 GNA11;GNAQ;GNA14 Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha;Guanine nucleotide-binding protein subunit alpha-14 yes no 2 0.0001932 107.15 By MS/MS By matching By matching By matching 1 1 1 1 1.2237 1.0907 9.5374 4 Median 1.198 1.1088 NaN 1 0 Median 1.2442 1.0729 NaN 1 0 Median 1.2036 1.3046 NaN 1 0 Median 1.2587 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18769000 8159000 10610000 13183000 5704300 7479200 2259400 1006100 1253300 3014500 1317700 1696800 311400 130920 180470 0 0 0 0 0 0 21262 2176 22172 112039;112040;112041;112042 113217 113217 1 LLLNAENPR EEWYFGKITRRESERLLLNAENPRGTFLVR RRESERLLLNAENPRGTFLVRESETTKGAY R L L P R G 1 1 2 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1038.5822 P12931 P12931 164 172 SRC Proto-oncogene tyrosine-protein kinase Src yes yes 2 0.0011047 85.212 By MS/MS By MS/MS By matching 2 1 1 0.83037 0.79156 81.917 4 Median NaN NaN NaN 0 0 Median 0.4401 0.37695 93.416 2 1 Median 0.81847 0.85864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2827 1.2931 NaN 1 0 Median NaN NaN NaN 0 0 Median 11941000 6974000 4966800 0 0 0 7714200 4813700 2900500 2709200 1592700 1116500 0 0 0 1517500 567590 949890 0 0 0 21263 1984 22173 112043;112044;112045;112046 113218;113219;113220 113218 3 LLLNLAENPAMTR LFSAGNEETKLQVLKLLLNLAENPAMTREL LKLLLNLAENPAMTRELLRAQVPSSLGSLF K L L T R E 2 1 2 0 0 0 1 0 0 0 4 0 1 0 1 0 1 0 0 0 0 0 13 0 1454.7915 Q9UH62 Q9UH62 266 278 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.0028084 63.283 By MS/MS 1 0.66234 0.6359 NaN 1 Median 0.66234 0.6359 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3013900 1450100 1563800 3013900 1450100 1563800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21264 4269 22174 112047 113221 113221 1 LLLNLISQVGR WIPQLLTCLVGSEGKLLLNLISQVGRVYPQ SEGKLLLNLISQVGRVYPQAVYFPIRTLYL K L L G R V 0 1 1 0 0 1 0 1 0 1 4 0 0 0 0 1 0 0 0 1 0 0 11 0 1224.7554 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3220 3230 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00054228 67.563 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.2843 1.12 16.955 7 Median 1.3245 1.3187 NaN 1 0 Median 1.5472 1.3371 34.924 2 0 Median 0.98878 1.1067 1.6784 2 0 Median 1.3514 1.1723 7.2413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590000 1903400 2686700 834770 251490 583280 2158800 928810 1230000 1217400 546970 670470 379040 176090 202950 0 0 0 0 0 0 21265 991 22175 112048;112049;112050;112051;112052;112053;112054 113222;113223 113223 2 LLLNNDNLLR HAPPGEFNEVFNDVRLLLNNDNLLREGAAH FNDVRLLLNNDNLLREGAAHAFAQYNMDQF R L L L R E 0 1 3 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1196.6877 P47755;C9JUG7;F8W9N7;A0A0D9SET8;P52907 P52907 38 47 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 no no 2 0.00035909 111.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 1.3378 1.2137 31.195 8 Median 1.2058 1.123 9.2008 3 0 Median 1.3748 1.1621 35.02 2 0 Median 1.3867 1.3446 NaN 1 0 Median 1.4063 1.1733 NaN 1 0 Median 2.5357 2.5462 NaN 1 0 Median NaN NaN NaN 0 0 Median 406050000 168890000 237150000 244590000 108770000 135830000 70650000 24483000 46167000 48601000 20335000 28266000 11897000 5020200 6876400 30302000 10285000 20017000 0 0 0 21266 2461;2354 22176 112055;112056;112057;112058;112059;112060;112061;112062 113224;113225;113226;113227;113228;113229;113230;113231;113232;113233;113234;113235;113236;113237;113238 113230 15 LLLNNGAK ______________________________ ______________________________ R L L A K M 1 0 2 0 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 841.50215 P15121;E9PCX2;E9PEF9 P15121 5 12 AKR1B1 Aldose reductase yes no 2 0.0051629 77.374 By MS/MS By MS/MS 3 1 0.99966 0.91803 30.085 3 Plateau 0.71953 0.66246 21.125 2 1 Median 1.2381 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8596800 4190200 4406600 5510600 2866600 2644000 3086200 1323600 1762600 0 0 0 0 0 0 0 0 0 0 0 0 21267 2015 22177 112063;112064;112065;112066 113239;113240;113241;113242 113242 4 LLLNPGNQR EEWYFGKMGRKDAERLLLNPGNQRGIFLVR RKDAERLLLNPGNQRGIFLVRESETTKGAY R L L Q R G 0 1 2 0 0 1 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1023.5825 J3QRU1;P07947 J3QRU1 176 184 YES1 Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes yes no 2 0.031814 35.88 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1901 1.1117 25.474 4 Median NaN NaN NaN 0 0 Median 0.83273 0.72082 NaN 1 0 Median 1.2243 1.2919 NaN 1 0 Median 1.2203 1.0607 NaN 1 0 Median 1.1607 1.1653 NaN 1 0 Median NaN NaN NaN 0 0 Median 9423800 4147000 5276800 0 0 0 2131400 1000500 1131000 1186200 621700 564470 560750 211470 349280 5545400 2313300 3232100 0 0 0 21268 1354 22178 112067;112068;112069;112070 113243;113244 113243 2 LLLNVTPTVRPDADQMTK SSLTNIPEEVREHVKLLLNVTPTVRPDADQ NVTPTVRPDADQMTKIPFFDDVGAVTLQYF K L L T K I 1 1 1 2 0 1 0 0 0 0 3 1 1 0 2 0 3 0 0 2 0 0 18 1 2011.0772 F8VSC5;A0A0U1RQQ9;Q6P3W7 F8VSC5 306 323 SCYL2 SCY1-like protein 2 yes no 3 0.00010041 40.52 By matching By MS/MS By matching 1 1 1 0.79416 0.82435 30.664 3 Median 0.79416 0.82435 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61068 0.69305 NaN 1 0 Median 1.309 1.258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8544600 5278200 3266400 2467400 1620400 847000 0 0 0 5886000 3574900 2311100 191140 82816 108330 0 0 0 0 0 0 21269 304 22179 112071;112072;112073 113245 113245 1 LLLNYAVR MVVGPTDVGKSTVCRLLLNYAVRLGRRPTY GKSTVCRLLLNYAVRLGRRPTYVELDVGQG R L L V R L 1 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 8 0 960.57565 E9PL17;Q92989 E9PL17 144 151 CLP1 Polyribonucleotide 5-hydroxyl-kinase Clp1 yes no 2 0.011435 75.311 By MS/MS 1 0.30352 0.33233 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30352 0.33233 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28598000 22025000 6573600 0 0 0 0 0 0 28598000 22025000 6573600 0 0 0 0 0 0 0 0 0 21270 954 22180 112074 113246 113246 1 LLLPGELAK KRSTITSREIQTAVRLLLPGELAKHAVSEG IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R L L A K H 1 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 952.59572 Q16778;P33778;P23527;P06899;Q8N257;Q96A08;A0A2R8Y619;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 101 109 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 1;2 0.00086947 93.374 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 5 9 8 19 10 0.88914 0.88409 17.27 60 Median 0.886 0.90258 23.207 9 0 Median 1.4444 1.2286 12.611 5 0 Median 0.85887 0.84275 14.716 9 0 Median 1.2961 1.0783 7.6646 8 0 Median 0.80307 0.82491 4.1253 19 0 Median 1.1836 0.95683 16.933 10 0 Median 38585000000 19146000000 19439000000 225180000 103260000 121930000 113640000 44152000 69490000 414410000 221340000 193070000 172610000 72688000 99917000 19432000000 10485000000 8946800000 18228000000 8220000000 10008000000 21271 2117;2521 22181 112075;112076;112077;112078;112079;112080;112081;112082;112083;112084;112085;112086;112087;112088;112089;112090;112091;112092;112093;112094;112095;112096;112097;112098;112099;112100;112101;112102;112103;112104;112105;112106;112107;112108;112109;112110;112111;112112;112113;112114;112115;112116;112117;112118;112119;112120;112121;112122;112123;112124;112125;112126;112127;112128;112129;112130;112131;112132;112133;112134 113247;113248;113249;113250;113251;113252;113253;113254;113255;113256;113257;113258;113259;113260;113261;113262;113263;113264;113265;113266;113267;113268;113269;113270;113271;113272;113273;113274;113275;113276;113277;113278;113279;113280;113281;113282;113283;113284;113285;113286;113287;113288;113289;113290;113291;113292;113293;113294;113295;113296;113297;113298;113299;113300;113301;113302;113303;113304;113305;113306;113307;113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321;113322;113323;113324;113325;113326;113327;113328;113329;113330;113331;113332;113333;113334;113335;113336;113337;113338;113339;113340;113341;113342 113295 95 LLLPGELAKHAVSEGTK KRSTITSREIQTAVRLLLPGELAKHAVSEG LPGELAKHAVSEGTKAVTKYTSSKKRKRRF R L L T K A 2 0 0 0 0 0 2 2 1 0 4 2 0 0 1 1 1 0 0 1 0 0 17 1 1761.9989 Q16778;P33778;P23527;P06899;Q8N257;Q96A08;A0A2R8Y619;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 101 117 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2;3;4 1.0468E-13 159.66 By MS/MS By MS/MS 7 5 0.85105 0.87596 13.847 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71466 0.82165 16.42 7 2 Median 1.048 0.88395 5.1537 5 0 Median 906080000 472500000 433590000 0 0 0 0 0 0 0 0 0 0 0 0 593200000 317560000 275640000 312880000 154940000 157950000 21272 2117;2521 22182 112135;112136;112137;112138;112139;112140;112141;112142;112143;112144;112145;112146 113343;113344;113345;113346;113347;113348;113349;113350;113351;113352;113353;113354;113355;113356;113357 113350 15 LLLPGVIK SAGDGFHGDVYLTVKLLLPGVIKTVYNLND DVYLTVKLLLPGVIKTVYNLNDKQIVKLFS K L L I K T 0 0 0 0 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 1 0 0 8 0 851.58443 P49916;K7ERZ5;K7EQB6 P49916 309 316 LIG3 DNA ligase 3 yes no 2 0.020489 46.37 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.0769 0.98567 6.2855 5 Median NaN NaN NaN 0 0 Median 1.0769 0.98144 NaN 1 0 Median 0.82951 0.9063 NaN 1 0 Median 1.2384 1.0416 NaN 1 0 Median 1.0363 1.0657 NaN 1 0 Median 1.2003 0.98567 NaN 1 0 Median 11343000 5987200 5356100 0 0 0 322260 127080 195180 9793800 5286900 4507000 685840 317500 368350 451780 211510 240270 89618 44277 45341 21273 2406 22183 112147;112148;112149;112150;112151 113358;113359 113359 2 LLLPHPSR NRVIILMLTNQTVHRLLLPHPSRMYRSELV TNQTVHRLLLPHPSRMYRSELVVDSQMQSI R L L S R M 0 1 0 0 0 0 0 0 1 0 3 0 0 0 2 1 0 0 0 0 0 0 8 0 931.56034 Q12769;G3V198;E9PR16 Q12769 164 171 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.020415 46.426 By MS/MS 1 0.65055 0.71565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65055 0.71565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4413600 2647900 1765700 0 0 0 0 0 0 4413600 2647900 1765700 0 0 0 0 0 0 0 0 0 21274 2756 22184 112152 113360 113360 1 LLLPLFR CALDCGAGIGRITKRLLLPLFREVDMVDIT GIGRITKRLLLPLFREVDMVDITEDFLVQA R L L F R E 0 1 0 0 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 7 0 870.56911 Q9BV86 Q9BV86 79 85 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 2 0.033554 48.242 By matching By matching By matching By matching By MS/MS By matching 2 3 2 1 2 1 1.1007 0.98603 18.224 11 Median 1.1647 1.1161 2.6923 2 0 Median 1.1007 0.92817 26.87 3 0 Median 0.94274 0.9312 8.0915 2 0 Median 1.0405 0.85973 NaN 1 0 Median 1.1851 1.2142 20.519 2 0 Median 1.1174 0.89988 NaN 1 0 Median 31492000 15531000 15961000 13141000 6183500 6957600 3040200 1700600 1339600 7805200 4039100 3766100 1131500 579610 551860 1745300 761270 984070 4628900 2267100 2361700 21275 3848 22185 112153;112154;112155;112156;112157;112158;112159;112160;112161;112162;112163 113361 113361 1 LLLPPGTDGGKEGPR VPPASSTPYKPPYGKLLLPPGTDGGKEGPR LLLPPGTDGGKEGPRVLNGNPQQEDGGLAG K L L P R V 0 1 0 1 0 0 1 4 0 0 3 1 0 0 3 0 1 0 0 0 0 0 15 1 1505.8202 Q8WXH0;A0A0C4DGK3;G3V2Q0 Q8WXH0 6494 6508 SYNE2 Nesprin-2 yes no 3 0.00090633 53.3 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21276 3521 22186 112164 113362 113362 1 LLLPTPTVK HEESESLQEDMLGNRLLLPTPTVKQESKDV DMLGNRLLLPTPTVKQESKDVEENVGLIVY R L L V K Q 0 0 0 0 0 0 0 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 9 0 980.62702 Q8IX12;A0A0C4DGG8 Q8IX12 1004 1012 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.00067245 105.57 By matching By MS/MS By MS/MS By matching 1 4 4 1 0.86409 0.76076 10.472 10 Median NaN NaN NaN 0 0 Median 0.86531 0.74063 NaN 1 0 Median 0.71004 0.77 10.866 4 0 Median 0.87319 0.76076 5.3267 4 0 Median NaN NaN NaN 0 0 Median 1.1362 0.98146 NaN 1 0 Median 36405000 21533000 14872000 0 0 0 1110800 578180 532640 31822000 19147000 12676000 3325200 1730200 1595000 0 0 0 146720 77685 69033 21277 3331 22187 112165;112166;112167;112168;112169;112170;112171;112172;112173;112174 113363;113364;113365;113366;113367;113368;113369;113370 113365 8 LLLPWLEAR TDELVAEVEKRNRLKLLLPWLEARIHEGCE KRNRLKLLLPWLEARIHEGCEEPATHNALA K L L A R I 1 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 0 1 0 0 0 0 9 0 1109.6597 A0A087WVQ6;Q00610 A0A087WVQ6 861 869 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.00039751 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 4 2 2 2 1.1209 1.0161 21.498 17 Median 1.1231 1.0839 3.1179 4 0 Median 1.1695 0.98929 7.6924 3 0 Median 0.81739 0.89773 4.0188 4 0 Median 1.2824 1.1307 4.4349 2 0 Median 0.92506 0.97618 6.6468 2 0 Median 1.5866 1.3681 65.129 2 0 Median 297770000 137200000 160570000 108950000 51261000 57687000 163100000 72356000 90743000 16697000 9082600 7614100 3075100 1370700 1704400 5248800 2815400 2433400 704870 311720 393140 21278 44 22188 112175;112176;112177;112178;112179;112180;112181;112182;112183;112184;112185;112186;112187;112188;112189;112190;112191 113371;113372;113373;113374;113375;113376;113377;113378;113379;113380;113381;113382;113383;113384;113385;113386;113387;113388 113374 18 LLLQGEADQSLLTFIDK YQETYLPYMIRSKLKLLLQGEADQSLLTFI LQGEADQSLLTFIDKAMHGELQKAILELHY K L L D K A 1 0 0 2 0 2 1 1 0 1 5 1 0 1 0 1 1 0 0 0 0 0 17 0 1903.0302 P78527 P78527 3051 3067 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 3.1882E-13 118.37 By MS/MS By MS/MS By matching By MS/MS 2 4 2 1 1.1752 1.1036 17.116 9 Median 1.0729 1.0543 11.423 2 0 Median 1.4301 1.2828 11.167 4 0 Median 0.86657 0.94633 2.4139 2 0 Median NaN NaN NaN 0 0 Median 0.85652 0.87844 NaN 1 0 Median NaN NaN NaN 0 0 Median 18559000 8147200 10412000 4000200 2026700 1973500 12991000 5360100 7631100 460810 247530 213280 0 0 0 1106800 512820 593950 0 0 0 21279 2647 22189 112192;112193;112194;112195;112196;112197;112198;112199;112200 113389;113390;113391;113392 113392 4 LLLQGLMDSVEAK LGYFPVGDGDFPHQKLLLQGLMDSVEAKQI QKLLLQGLMDSVEAKQIELQFTIGEAITSA K L L A K Q 1 0 0 1 0 1 1 1 0 0 4 1 1 0 0 1 0 0 0 1 0 0 13 0 1415.7694 Q5VYK3;J3KN16 Q5VYK3 880 892 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 5.2583E-06 97.456 By MS/MS By MS/MS 1 2 1.1719 1.0756 28.486 3 Median 1.1115 1.0756 NaN 1 0 Median 1.5282 1.3384 36.117 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67880000 31016000 36864000 10504000 4967900 5536500 57376000 26048000 31328000 0 0 0 0 0 0 0 0 0 0 0 0 21280 3116 22190 112201;112202;112203 113393;113394;113395;113396 113396 4 LLLQHAPLR RVGPEELPVVGQLLRLLLQHAPLRTHMLTN VGQLLRLLLQHAPLRTHMLTNAILVQQIIK R L L L R T 1 1 0 0 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 0 0 0 9 0 1059.6553 Q9NXF1 Q9NXF1 866 874 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.00064138 107.66 By matching By MS/MS By MS/MS 1 1 1 0.89022 0.95654 23.54 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89022 0.95654 NaN 1 0 Median 1.3422 1.1566 NaN 1 0 Median 0.70046 0.72431 NaN 1 0 Median NaN NaN NaN 0 0 Median 13571000 7048700 6522700 0 0 0 0 0 0 3178000 1413700 1764300 3662700 1557400 2105300 6730700 4077700 2653000 0 0 0 21281 4163 22191 112204;112205;112206 113397;113398;113399 113398 3 LLLQLEATK AAINLTDPDGALAKRLLLQLEATKNSKGGS GALAKRLLLQLEATKNSKGGSGGKTTGTPP R L L T K N 1 0 0 0 0 1 1 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 9 0 1027.6277 Q13561;H0YI98;F8W1I6;F8VW18 Q13561 177 185 DCTN2 Dynactin subunit 2 yes no 2 0.00070224 103.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1 1.2018 1.06 10.181 9 Median 1.0424 0.98759 10.007 2 0 Median 1.2877 1.1035 2.4206 2 0 Median 0.91785 0.89157 NaN 1 0 Median 1.2517 1.1024 7.8415 2 0 Median 1.1044 1.0578 NaN 1 0 Median 1.4324 1.2208 NaN 1 0 Median 34993000 15887000 19106000 17185000 7340000 9844600 2764600 1157000 1607600 9095800 4779600 4316200 3366600 1418800 1947800 2118700 976290 1142400 463190 215630 247560 21282 2824 22192 112207;112208;112209;112210;112211;112212;112213;112214;112215 113400;113401;113402;113403;113404;113405;113406 113401 7 LLLQNELK VKNLTLQLEQESNKRLLLQNELKTQAFEAD EQESNKRLLLQNELKTQAFEADNLKGLEKQ R L L L K T 0 0 1 0 0 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 8 0 969.58588 A0A0U1RQV4;Q13464 A0A0U1RQV4 784 791 ROCK1 Rho-associated protein kinase 1 yes no 2 0.0051787 77.282 By MS/MS By MS/MS 1 1 1.0977 1.0086 22.532 2 Median 0.89437 0.86003 NaN 1 0 Median 1.3474 1.1828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4696600 2370000 2326600 3234700 1718400 1516300 1461900 651600 810320 0 0 0 0 0 0 0 0 0 0 0 0 21283 305 22193 112216;112217 113407;113408;113409 113408 3 LLLQQLEATLETGKR KTAENGVSSRIDILRLLLQQLEATLETGKR LLLQQLEATLETGKRFIEKDIQYPFLGPVP R L L K R F 1 1 0 0 0 2 2 1 0 0 5 1 0 0 0 0 2 0 0 0 0 0 15 1 1711.9832 Q14CX7 Q14CX7 729 743 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 3 0.073196 6.0316 By MS/MS By matching By matching By matching By matching 1 1 2 1 1 1.2061 1.2026 21.703 6 Median 1.2618 1.3054 NaN 1 0 Median 0.96939 0.94043 NaN 1 0 Median 1.3273 1.5163 6.4432 2 0 Median 1.1529 1.1079 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0651 0.9617 NaN 1 0 Median 5541600 2503200 3038400 1358000 585160 772880 239340 121980 117360 2098300 950790 1147500 161360 56769 104590 0 0 0 1684500 788500 895990 21284 2908 22194 112218;112219;112220;112221;112222;112223 113410 113410 1 LLLQQSIGETNVER RTAELKKALKEKENRLLLQQSIGETNVERK RLLLQQSIGETNVERKAKKKSSSSSSSDSS R L L E R K 0 1 1 0 0 2 2 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 14 0 1598.8628 B3KVL5;Q8TBK6 B3KVL5 85 98 ZCCHC10 Zinc finger CCHC domain-containing protein 10 yes no 2 4.287E-08 129.89 By MS/MS 1 1.0824 1.0856 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0824 1.0856 NaN 1 0 Median NaN NaN NaN 0 0 Median 7557800 3859900 3697900 0 0 0 0 0 0 0 0 0 0 0 0 7557800 3859900 3697900 0 0 0 21285 586 22195 112224 113411;113412 113411 2 LLLQVESLTTELSAER EEQSNSELLNDRYRKLLLQVESLTTELSAE LLQVESLTTELSAERSFSAKAESGRQQLER K L L E R S 1 1 0 0 0 1 3 0 0 0 5 0 0 0 0 2 2 0 0 1 0 0 16 0 1800.9833 Q7Z406;A1L2Z2 Q7Z406 1779 1794 MYH14 Myosin-14 yes no 2 0.0044138 52.693 By MS/MS 1 1.153 0.98618 NaN 1 Median NaN NaN NaN 0 0 Median 1.153 0.98618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4632100 2497900 2134200 0 0 0 4632100 2497900 2134200 0 0 0 0 0 0 0 0 0 0 0 0 21286 3242 22196 112225 113413 113413 0 LLLQVQHASK AAISKTAVAPIERVKLLLQVQHASKQIAAD IERVKLLLQVQHASKQIAADKQYKGIVDCI K L L S K Q 1 0 0 0 0 2 0 0 1 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1135.6713 P05141;P12235;V9GYG0;P12236 P12236 34 43 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 3.3455E-07 163.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 3 1 4 6 1.4243 1.2158 15.18 30 Median 1.1694 1.1412 10.216 8 0 Median 1.4988 1.2884 8.1123 8 0 Median 1.1998 1.2165 9.1667 3 0 Median 1.6644 1.3987 NaN 1 0 Median 1.5803 1.6415 22.438 4 0 Median 1.4905 1.1983 9.4184 6 0 Median 703560000 293360000 410200000 313790000 144200000 169590000 321410000 121590000 199830000 20517000 9167100 11350000 5639400 2250100 3389300 19797000 7618100 12179000 22403000 8540100 13863000 21287 1977;1861;1976 22197 112226;112227;112228;112229;112230;112231;112232;112233;112234;112235;112236;112237;112238;112239;112240;112241;112242;112243;112244;112245;112246;112247;112248;112249;112250;112251;112252;112253;112254;112255 113414;113415;113416;113417;113418;113419;113420;113421;113422;113423;113424;113425;113426;113427;113428;113429;113430;113431;113432;113433;113434;113435;113436;113437;113438;113439;113440;113441;113442;113443;113444;113445;113446;113447;113448;113449;113450;113451;113452;113453;113454;113455;113456;113457;113458;113459 113442 46 LLLSATSGEK LHNLPKAVDDKQLRKLLLSATSGEKGVRIK KQLRKLLLSATSGEKGVRIKECRVMRDLKG K L L E K G 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 10 0 1017.5706 Q9NW13 Q9NW13 506 515 RBM28 RNA-binding protein 28 yes yes 2 0.00036244 96.331 By MS/MS By MS/MS 1 1 1.2986 1.1961 19.522 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3381 1.3731 NaN 1 0 Median 1.2603 1.0419 NaN 1 0 Median 10801000 4223000 6577700 0 0 0 0 0 0 0 0 0 0 0 0 7525700 2872700 4653000 3274900 1350200 1924700 21288 4145 22198 112256;112257 113460;113461;113462 113461 3 LLLSGTADGADLR DQDDLENPMLETASKLLLSGTADGADLRTV SKLLLSGTADGADLRTVDPETQARLEALLE K L L L R T 2 1 0 2 0 0 0 2 0 0 4 0 0 0 0 1 1 0 0 0 0 0 13 0 1300.6987 H0YM23;O75179;A0A1W2PQ15 H0YM23 38 50 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 0.00031274 77.379 By MS/MS By matching 2 1 0.80996 0.76066 14.994 3 Median 0.72082 0.69898 11.958 2 0 Median 0.85774 0.86618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18560000 11638000 6922000 15194000 9467700 5726500 3365800 2170300 1195600 0 0 0 0 0 0 0 0 0 0 0 0 21289 1197 22199 112258;112259;112260 113463 113463 1 LLLSIPHSDLLDYPK YGDDALDNALQTFIKLLLSIPHSDLLDYPK LLLSIPHSDLLDYPKLSQSYYSLLEVLTQD K L L P K L 0 0 0 2 0 0 0 0 1 1 5 1 0 0 2 2 0 0 1 0 0 0 15 0 1722.9556 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 872 886 XPO7 Exportin-7 yes no 3 0.024628 18.833 By MS/MS 1 0.89485 0.78042 NaN 1 Median NaN NaN NaN 0 0 Median 0.89485 0.78042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2809800 1502500 1307300 0 0 0 2809800 1502500 1307300 0 0 0 0 0 0 0 0 0 0 0 0 21290 885 22200 112261 113464 113464 1 LLLSSETPIEGK YKGLFEVNPWKREVKLLLSSETPIEGKNMS EVKLLLSSETPIEGKNMSFVNDLTVTQDGR K L L G K N 0 0 0 0 0 0 2 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 12 0 1285.7129 Q9HDC9;H0Y512 Q9HDC9 184 195 APMAP Adipocyte plasma membrane-associated protein yes no 2 6.8542E-05 85.377 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 1 1.3193 1.1177 20.632 5 Median 0.96358 0.88636 NaN 1 0 Median 1.3193 1.1177 11.737 3 0 Median 1.3847 1.4921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68761000 31068000 37693000 38609000 18168000 20442000 26781000 11693000 15088000 3370900 1207900 2163000 0 0 0 0 0 0 0 0 0 21291 4039 22201 112262;112263;112264;112265;112266;112267;112268;112269 113465;113466;113467;113468;113469;113470;113471;113472 113468 8 LLLSYGADPTLATYSGR PLHDAVENDHLEIVRLLLSYGADPTLATYS LSYGADPTLATYSGRTIMKMTHSELMEKFL R L L G R T 2 1 0 1 0 0 0 2 0 0 4 0 0 0 1 2 2 0 2 0 0 0 17 0 1796.9309 Q6W2J9;H7C2V9;A6NE70;H7BZ37;H7C231 Q6W2J9 1548 1564 BCOR BCL-6 corepressor yes no 2 6.1758E-12 98.942 By MS/MS By matching By matching 4 2 1 0.73054 0.78001 10.873 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69094 0.75325 2.3785 4 2 Median 1.0212 0.87184 2.4197 2 0 Median 1.016 0.9889 NaN 1 0 Median NaN NaN NaN 0 0 Median 29210000 17099000 12111000 0 0 0 0 0 0 27628000 16328000 11300000 602670 291220 311460 978730 479350 499380 0 0 0 21292 3191 22202 112270;112271;112272;112273;112274;112275;112276 113473;113474;113475;113476;113477 113474 5 LLLTAIGYGHVR ETRRGAYLNALKIAKLLLTAIGYGHVRAVA IAKLLLTAIGYGHVRAVAEACQPGVEGVNP K L L V R A 1 1 0 0 0 0 0 2 1 1 3 0 0 0 0 0 1 0 1 1 0 0 12 0 1311.7663 Q93008;O00507 Q93008 1157 1168 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3 7.4934E-05 83.397 By MS/MS 2 1.0271 1.0094 10.339 2 Median 1.0271 1.0094 10.339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7433100 3913100 3520000 7433100 3913100 3520000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21293 3573 22203 112277;112278 113478;113479 113479 2 LLLTGTPLQNK KLTQVLNTHYVAPRRLLLTGTPLQNKLPEL APRRLLLTGTPLQNKLPELWALLNFLLPTI R L L N K L 0 0 1 0 0 1 0 1 0 0 4 1 0 0 1 0 2 0 0 0 0 0 11 0 1196.7129 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 907 917 SMARCA4 Transcription activator BRG1 yes no 2 9.4412E-05 149.65 By MS/MS By MS/MS By matching 2 2 1 0.89871 0.96541 12.6 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84046 0.92662 5.7993 2 0 Median 1.1556 1.0435 1.1995 2 0 Median NaN NaN NaN 0 0 Median 0.89871 0.7739 NaN 1 0 Median 56677000 29501000 27176000 0 0 0 0 0 0 48524000 25715000 22809000 7625400 3500000 4125300 0 0 0 527820 286200 241620 21294 366 22204 112279;112280;112281;112282;112283 113480;113481;113482;113483;113484;113485;113486 113482 7 LLLTPWVK LSAVSGEDTQDRTDRLLLTPWVKFLWESYR TQDRTDRLLLTPWVKFLWESYRQCLDLLRN R L L V K F 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 1 0 1 0 0 8 0 968.60589 Q14152 Q14152 144 151 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.016198 49.59 By MS/MS By matching By matching By matching By matching By matching 3 1 2 1 2 1 1.0356 0.96955 22.83 10 Median 0.92973 0.93872 4.1768 3 0 Median 0.84762 0.7662 NaN 1 0 Median 1.0917 1.1858 4.0516 2 0 Median 1.087 0.98369 NaN 1 0 Median 1.3555 1.4209 24.571 2 0 Median 0.99133 0.8584 NaN 1 0 Median 24801000 12733000 12068000 19749000 10365000 9384300 403910 235050 168860 1559500 733940 825540 542790 240530 302260 2312200 1044200 1268000 233240 114230 119010 21295 2860 22205 112284;112285;112286;112287;112288;112289;112290;112291;112292;112293 113487;113488 113487 2 LLLTSAPSLATSPAFR TSIWYNRSDVFEAWRLLLTSAPSLATSPAF LLTSAPSLATSPAFRYDLLDLTRQAVQELV R L L F R Y 3 1 0 0 0 0 0 0 0 0 4 0 0 1 2 3 2 0 0 0 0 0 16 0 1643.9247 P54802 P54802 542 557 NAGLU Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form yes yes 2 0.0010166 39.266 By MS/MS 1 0.35189 0.34141 NaN 1 Median 0.35189 0.34141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3427700 2390800 1036900 3427700 2390800 1036900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21296 2487 22206 112294 113489;113490 113490 2 LLLTSTEK LHRELVKRYQEKWDKLLLTSTEKSHVDLFP YQEKWDKLLLTSTEKSHVDLFPKDSIIYLT K L L E K S 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 2 0 0 0 0 0 8 0 903.5277 Q7L0Y3;C9JVB6 Q7L0Y3 269 276 TRMT10C Mitochondrial ribonuclease P protein 1 yes no 2 0.0081051 64.265 By MS/MS By MS/MS By matching 1 1 1 1.5888 1.3633 27.886 3 Median 1.0772 1.0132 NaN 1 0 Median 1.5888 1.3633 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1139 1.7691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7186000 3065400 4120600 2696900 1285600 1411300 3984400 1586100 2398300 0 0 0 504640 193690 310960 0 0 0 0 0 0 21297 3218 22207 112295;112296;112297 113491;113492;113493 113491 3 LLLTTDLK RRRTTCALTLEAGEKLLLTTDLKTKESVGR TLEAGEKLLLTTDLKTKESVGRRISQLQDS K L L L K T 0 0 0 1 0 0 0 0 0 0 4 1 0 0 0 0 2 0 0 0 0 0 8 0 915.56408 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5768 5775 SYNE2 Nesprin-2 yes no 2 0.0069279 69.198 By MS/MS 1 1.0256 1.099 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0256 1.099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7834100 3819200 4014900 0 0 0 0 0 0 7834100 3819200 4014900 0 0 0 0 0 0 0 0 0 21298 3521 22208 112298 113494;113495 113494 2 LLLTTQFPFK QSLSCKEHLTTVLDKLLLTTQFPFKINEKV TVLDKLLLTTQFPFKINEKVLQVLTNIFLY K L L F K I 0 0 0 0 0 1 0 0 0 0 3 1 0 2 1 0 2 0 0 0 0 0 10 0 1206.7012 Q9UBD5 Q9UBD5 292 301 ORC3 Origin recognition complex subunit 3 yes yes 2 0.011936 41.979 By MS/MS By MS/MS 1 2 1.0065 0.9307 5.3666 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87568 0.9307 NaN 1 0 Median 1.0579 0.9221 7.5516 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5981700 3008300 2973400 0 0 0 0 0 0 4037400 2064300 1973000 1944400 944030 1000300 0 0 0 0 0 0 21299 4236 22209 112299;112300;112301 113496;113497 113496 2 LLLWSQR IQVSGQSEDMTAKEKLLLWSQRMVEGYQGL EDMTAKEKLLLWSQRMVEGYQGLRCDNFTS K L L Q R M 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 7 0 914.53379 Q15149;H0YDN1;E9PMV1;E9PKG0;E9PQ28 Q15149 301 307 PLEC Plectin yes no 2 0.014432 74.415 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.3954 1.2458 22.16 5 Median 1.0588 1.0317 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79933 0.84158 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3954 1.4654 NaN 1 0 Median 1.5438 1.2902 4.9631 2 0 Median 20952000 7953900 12998000 16303000 6028400 10274000 0 0 0 456020 204900 251120 0 0 0 3838300 1585100 2253200 354530 135530 219000 21300 2933 22210 112302;112303;112304;112305;112306 113498;113499;113500 113498 3 LLLWTQK IYISGESGDMSAKEKLLLWTQKVTAGYTGI GDMSAKEKLLLWTQKVTAGYTGIKCTNFSS K L L Q K V 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 1 1 0 0 0 0 7 0 900.54329 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 195 201 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.029918 50.025 By MS/MS By matching By matching 1 1 1 1.023 1.039 2.727 3 Median 1.023 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9509 1.039 NaN 1 0 Median 1.1479 1.0723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930500 3046100 2884400 3600300 1888400 1711900 0 0 0 2237300 1118700 1118600 92968 39102 53866 0 0 0 0 0 0 21301 1220 22211 112307;112308;112309 113501 113501 1 LLLYDTVQSELEEK ECEIQASRQHCESEKLLLYDTVQSELEEKI KLLLYDTVQSELEEKIRRLEEDRHSIDITS K L L E K I 0 0 0 1 0 1 3 0 0 0 4 1 0 0 0 1 1 0 1 1 0 0 14 0 1678.8665 Q5PSV4;H0YHD0 Q5PSV4 151 164 BRMS1L Breast cancer metastasis-suppressor 1-like protein yes no 2 6.8787E-07 120.77 By MS/MS 1 0.79995 0.82681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79995 0.82681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11356000 5994800 5360700 0 0 0 0 0 0 11356000 5994800 5360700 0 0 0 0 0 0 0 0 0 21302 3066 22212 112310 113502 113502 1 LLMFPESR VVNVKDNPPMKDMFKLLMFPESRIFQAENA PMKDMFKLLMFPESRIFQAENAKIKREWLE K L L S R I 0 1 0 0 0 0 1 0 0 0 2 0 1 1 1 1 0 0 0 0 0 0 8 0 991.51609 Q8IYI6 Q8IYI6 253 260 EXOC8 Exocyst complex component 8 yes yes 2 0.047133 35.356 By MS/MS By MS/MS 1 1 0.77268 0.79527 14.248 2 Median 0.8892 0.87956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67143 0.71905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4502100 2359800 2142300 2027600 963670 1063900 0 0 0 2474500 1396100 1078300 0 0 0 0 0 0 0 0 0 21303 3343 22213 112311;112312 113503;113504 113503 2 LLMHETQPPSHFSVSTITR PVVAVARDQSSVYLKLLMHETQPPSHFSVS ETQPPSHFSVSTITRIYRGYNLLPSITDVT K L L T R I 0 1 0 0 0 1 1 0 2 1 2 0 1 1 2 3 3 0 0 1 0 0 19 0 2180.1048 P42858 P42858 964 982 HTT Huntingtin yes yes 4 2.9699E-08 63.302 By MS/MS 1 1.0639 1.0578 NaN 1 Median 1.0639 1.0578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6606300 4155700 2450600 6606300 4155700 2450600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21304 2319 22214 112313 113505 113505 1 LLMHHIR ANRNGTKYLARTLNRLLMHHIRDCLPELKT YLARTLNRLLMHHIRDCLPELKTRINVLAA R L L I R D 0 1 0 0 0 0 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 0 7 0 918.52218 O00429 O00429 292 298 DNM1L Dynamin-1-like protein yes yes 2 0.0076141 88.627 By MS/MS 2 1.1625 1.0126 0.67437 2 Median NaN NaN NaN 0 0 Median 1.1625 1.0126 0.67437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3232900 1476700 1756200 0 0 0 3232900 1476700 1756200 0 0 0 0 0 0 0 0 0 0 0 0 21305 1463 22215 112314;112315 113506;113507 113507 2 LLMLDDQR DLGPTLANSTHHNVRLLMLDDQRLLLPHWA STHHNVRLLMLDDQRLLLPHWAKVVLTDPE R L L Q R L 0 1 0 2 0 1 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 8 0 1002.5168 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 230 237 GBA Glucosylceramidase yes no 2 0.01208 55.676 By MS/MS By MS/MS By matching 1 1 1 1.1114 1.0164 8.4433 3 Plateau 1.1195 1.0612 NaN 1 0 Median 1.0418 0.9016 NaN 1 0 Median 0.96533 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22391000 10859000 11532000 13885000 6463200 7421600 6644800 3412900 3231900 1861100 982780 878340 0 0 0 0 0 0 0 0 0 21306 281 22216 112316;112317;112318 113508;113509 113508 2 LLMLGLDNAGK LTILKKMKQKERELRLLMLGLDNAGKTTIL RELRLLMLGLDNAGKTTILKKFNGEDIDTI R L L G K T 1 0 1 1 0 0 0 2 0 0 4 1 1 0 0 0 0 0 0 0 0 0 11 0 1143.6322 P36404;V9GYD0 P36404 19 29 ARL2;ARL2-SNX15 ADP-ribosylation factor-like protein 2 yes no 2 0.00018967 94.85 By MS/MS By MS/MS 2 2 1.0471 0.95317 11.653 4 Median 0.99378 0.95317 0.2507 2 0 Median 1.2281 1.0691 16.598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37566000 18854000 18712000 33929000 17389000 16540000 3637000 1464800 2172300 0 0 0 0 0 0 0 0 0 0 0 0 21307 2254 22217 112319;112320;112321;112322 113510;113511;113512 113510 3 LLMLYTR EPGDPPCLRRLNFVRLLMLYTRKFESTDPR LRRLNFVRLLMLYTRKFESTDPREALQYFY R L L T R K 0 1 0 0 0 0 0 0 0 0 3 0 1 0 0 0 1 0 1 0 0 0 7 0 908.51536 Q8N1F7;H3BVG0 Q8N1F7 531 537 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0061063 94.407 By MS/MS By MS/MS By matching 1 2 1 1.1286 1.1948 4.1024 4 Median 1.1273 1.106 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1071 1.1948 0.50635 2 1 Median 1.4107 1.2087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18797000 8813400 9983600 2541500 1135500 1406000 0 0 0 15509000 7381100 8128000 746380 296810 449570 0 0 0 0 0 0 21308 3356 22218 112323;112324;112325;112326 113513;113514;113515;113516;113517 113517 5 LLMNYEDKYYK HWHWVLKHLVHQIPRLLMNYEDKYYKEVQT QIPRLLMNYEDKYYKEVQTVSEHIQNCLGS R L L Y K E 0 0 1 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 3 0 0 0 11 1 1478.7116 Q9NU22 Q9NU22 2762 2772 MDN1 Midasin yes yes 2;3 0.00023396 77.677 By matching By MS/MS By matching 1 2 1 1.0968 1.1387 35.834 4 Median NaN NaN NaN 0 0 Median 1.1938 1.1362 NaN 1 0 Median 1.308 1.4828 37.025 2 0 Median 0.79597 0.80866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29661000 13243000 16418000 0 0 0 3613500 1426600 2187000 25634000 11626000 14008000 413430 190390 223040 0 0 0 0 0 0 21309 4112 22219 112327;112328;112329;112330 113518;113519;113520 113519 3 LLMQNQSSTNHPGASIALSR NRVAILAELDKEKRKLLMQNQSSTNHPGAS QSSTNHPGASIALSRPSLNKDFRDHAEQQH K L L S R P 2 1 2 0 0 2 0 1 1 1 3 0 1 0 1 4 1 0 0 0 0 0 20 0 2124.0746 Q9NRY2 Q9NRY2 29 48 INIP SOSS complex subunit C yes yes 3 6.7431E-06 45.369 By matching By MS/MS 1 1 0.9294 0.86173 13.973 2 Median NaN NaN NaN 0 0 Median 1.1222 0.95122 NaN 1 0 Median 0.76969 0.78066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10618000 5507900 5109900 0 0 0 3838600 1706500 2132100 6779200 3801400 2977800 0 0 0 0 0 0 0 0 0 21310 4094 22220 112331;112332 113521 113521 1 LLMQPLSSIHVR FALNPDILCSAKRLKLLMQPLSSIHVRTET RLKLLMQPLSSIHVRTETLALTKLEVWWYL K L L V R T 0 1 0 0 0 1 0 0 1 1 3 0 1 0 1 2 0 0 0 1 0 0 12 0 1392.7911 Q5UIP0;H7BZN3 Q5UIP0 319 330 RIF1 Telomere-associated protein RIF1 yes no 3 0.00035124 54.7 By MS/MS 2 0.89922 0.99064 4.49 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89922 0.99064 4.49 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6616800 3413100 3203800 0 0 0 0 0 0 6616800 3413100 3203800 0 0 0 0 0 0 0 0 0 21311 3109 22221 112333;112334 113522;113523 113522 2 LLMSEDYFTQAMEVK QNIVFNAETYSNLIKLLMSEDYFTQAMEVK LLMSEDYFTQAMEVKAFAETHIKGFTLNDA K L L V K A 1 0 0 1 0 1 2 0 0 0 2 1 2 1 0 1 1 0 1 1 0 0 15 0 1803.8423 P42704 P42704 1076 1090 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00036566 59.542 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2908 1.2539 9.5104 4 Median 1.0886 1.054 NaN 1 0 Median 1.4086 1.2318 NaN 1 0 Median 1.1829 1.2763 NaN 1 0 Median 1.4931 1.298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15398000 7257200 8140700 10427000 5173800 5253200 2567200 1029100 1538100 2232100 988090 1244000 171660 66194 105460 0 0 0 0 0 0 21312 2315 22222 112335;112336;112337;112338 113524;113525 113524 2 LLNDEDPVVVTK DDAELATRALPELTKLLNDEDPVVVTKAAM LTKLLNDEDPVVVTKAAMIVNQLSKKEASR K L L T K A 0 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 3 0 0 12 0 1340.7187 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 150 161 JUP Junction plakoglobin yes no 2 0.0018518 72.006 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.77748 0.67447 25.456 3 Median 0.56693 0.52855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77748 0.67447 NaN 1 0 Median 0.86141 0.87927 NaN 1 0 Median NaN NaN NaN 0 0 Median 23787000 14831000 8956200 5780800 3699400 2081400 0 0 0 2962800 2962800 0 2087200 1094200 992960 12956000 7074400 5881900 0 0 0 21313 2013 22223 112339;112340;112341;112342 113526;113527;113528;113529 113526 3 LLNDEDQVVVNK DDAELATRAIPELTKLLNDEDQVVVNKAAV LTKLLNDEDQVVVNKAAVMVHQLSKKEASR K L L N K A 0 0 2 2 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 3 0 0 12 0 1384.7198 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0 A0A2R8Y804 159 170 CTNNB1 Catenin beta-1 yes no 2 0.00060433 70.028 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.92139 0.80088 32.95 5 Median 0.81767 0.75295 NaN 1 0 Median 1.2557 1.1107 NaN 1 0 Median 0.69941 0.77193 57.287 2 0 Median 0.92139 0.80088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20445000 11080000 9364800 7057100 3660600 3396600 2062900 828120 1234800 10095000 5915200 4180100 1229200 675850 553320 0 0 0 0 0 0 21314 368 22224 112343;112344;112345;112346;112347 113530;113531;113532 113531 3 LLNENSYVPR LSEKLDSTDFTGTIKLLNENSYVPREAGSQ TGTIKLLNENSYVPREAGSQKDENLALYVE K L L P R E 0 1 2 0 0 0 1 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 10 0 1203.6248 P02786;G3V0E5 P02786 146 155 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 5.6804E-05 126.41 By MS/MS By MS/MS 2 1 1.0724 0.99451 14.38 3 Median 1.1548 1.1026 14.588 2 1 Median 1.0724 0.92692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37378000 16162000 21216000 25767000 10667000 15100000 11611000 5494800 6115800 0 0 0 0 0 0 0 0 0 0 0 0 21315 1836 22225 112348;112349;112350 113533;113534;113535 113533 3 LLNETLGEVGSPGLLFYSLR SRPEAFQPHHRELLRLLNETLGEVGSPGLL LGEVGSPGLLFYSLRTLTTMAPYLSTEDVP R L L L R T 0 1 1 0 0 0 2 3 0 0 6 0 0 1 1 2 1 0 1 1 0 0 20 0 2177.1732 Q8TEX9;H0YN14 Q8TEX9 163 182 IPO4 Importin-4 yes no 2 0.045363 19.578 By MS/MS By matching 1 1 0.84518 0.80074 11.62 2 Median 0.86084 0.86932 NaN 1 0 Median 0.82981 0.73758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 749060 368600 380470 612930 301600 311330 136140 67004 69133 0 0 0 0 0 0 0 0 0 0 0 0 21316 3480 22226 112351;112352 113536 113536 1 LLNFLMK ATPTGVPKDEVLANRLLNFLMKHVFHPKRA KDEVLANRLLNFLMKHVFHPKRAVFRHNLE R L L M K H 0 0 1 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 7 0 877.50955 P78527 P78527 2215 2221 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.007586 88.734 By MS/MS By matching By MS/MS By matching By matching By matching 3 4 4 4 2 4 1.4158 1.2407 16.047 21 Median 1.0593 1.0355 2.1063 3 0 Median 1.5268 1.3441 8.7524 4 0 Median 0.98291 1.0704 7.2331 4 0 Median 1.5748 1.4652 4.6518 4 0 Median 1.1083 1.1494 6.124 2 0 Median 1.4895 1.2782 22.034 4 0 Median 256270000 119750000 136520000 55999000 25436000 30563000 52395000 21436000 30959000 131670000 65336000 66334000 9095400 3700900 5394500 5934900 3392700 2542200 1176800 452090 724690 21317 2647 22227;22228 112353;112354;112355;112356;112357;112358;112359;112360;112361;112362;112363;112364;112365;112366;112367;112368;112369;112370;112371;112372;112373 113537;113538;113539;113540;113541;113542;113543;113544;113545;113546;113547 113538 1321 11 LLNFPTIVER SVVVFDTAPTGHTLRLLNFPTIVERGLGRL GHTLRLLNFPTIVERGLGRLMQIKNQISPF R L L E R G 0 1 1 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 0 1 0 0 10 0 1200.6867 O43681;A0A087WXS7;K7ERW9 O43681 176 185 ASNA1 ATPase ASNA1 yes no 2 0.00072673 101.64 By MS/MS By MS/MS By matching By matching 1 4 2 1 1.0102 0.9103 17.957 8 Median 1.0049 1.0029 NaN 1 0 Median 0.93131 0.81694 12.991 4 0 Median 1.1093 1.1325 15.156 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0123 0.87118 NaN 1 0 Median 41856000 20556000 21300000 15331000 7385900 7944700 20659000 10604000 10055000 5004800 2052500 2952300 0 0 0 0 0 0 861390 513210 348180 21318 70 22229 112374;112375;112376;112377;112378;112379;112380;112381 113548;113549;113550;113551 113550 4 LLNFYEK RTVPEIEKVIEELRKLLNFYEKQEGEKLPF KVIEELRKLLNFYEKQEGEKLPFLGLALSS K L L E K Q 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 7 0 925.49092 P18074;E7EVE9;A8MX75;K7EIT8;K7ENL1;B4E0F6 P18074 90 96 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 2 0.035027 60.76 By MS/MS 1 0.79414 0.8211 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79414 0.8211 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7091100 4100300 2990800 0 0 0 0 0 0 7091100 4100300 2990800 0 0 0 0 0 0 0 0 0 21319 2053 22230 112382 113552 113552 1 LLNGDCPESLKK ______________________________ ______________________________ M L L K K E 0 0 1 1 1 0 1 1 0 0 3 2 0 0 1 1 0 0 0 0 0 0 12 1 1372.7021 O75153;I3L318;I3L3A3;I3L350 O75153 2 13 CLUH Clustered mitochondria protein homolog yes no 2 0.011213 46.462 By MS/MS 1 0.03048 0.030966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.03048 0.030966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2867700 2755600 112170 0 0 0 0 0 0 0 0 0 2867700 2755600 112170 0 0 0 0 0 0 21320 1651 22231 112383 113553 113553 1 LLNGPGDVETGTSITVPQKK QAELKKKDEEFQRTKLLNGPGDVETGTSIT GDVETGTSITVPQKKWLHFISPIFVQALTL K L L K K W 0 0 1 1 0 1 1 3 0 1 2 2 0 0 2 1 3 0 0 2 0 0 20 1 2053.1055 Q9HC07;V9GY93 Q9HC07 209 228 TMEM165 Transmembrane protein 165 yes no 3 1.1938E-10 88.019 By MS/MS By MS/MS 2 2 1.0598 1.0329 17.467 4 Median 0.87523 0.90195 7.8093 2 0 Median 1.2356 1.1916 8.8638 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34059000 17448000 16612000 21693000 11696000 9996900 12366000 5751200 6614600 0 0 0 0 0 0 0 0 0 0 0 0 21321 4023 22232 112384;112385;112386;112387 113554;113555;113556;113557;113558 113554 5 LLNILMQLR DIDILNSAGKMDKMRLLNILMQLRKCCNHP KMDKMRLLNILMQLRKCCNHPYLFDGAEPG R L L L R K 0 1 1 0 0 1 0 0 0 1 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1112.674 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 446 454 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.0072816 60.788 By matching By MS/MS By matching By MS/MS By matching 2 2 2 3 1 1.1596 1.2059 26.946 10 Median NaN NaN NaN 0 0 Median 2.103 1.8392 47.294 2 0 Median 1.0712 1.1749 0.83893 2 0 Median 1.538 1.354 9.6495 2 0 Median 1.1233 1.1337 5.3807 3 0 Median 1.0723 0.93186 NaN 1 0 Median 20755000 9464800 11291000 0 0 0 1542500 583260 959240 6027900 2957500 3070400 457920 193330 264590 12254000 5515900 6737600 473390 214750 258640 21322 1608;643;167 22233;22234 112388;112389;112390;112391;112392;112393;112394;112395;112396;112397 113559;113560;113561 113561 79 3 LLNIWQER VAREADEGCKKPLERLLNIWQERSVYGGEF CKKPLERLLNIWQERSVYGGEFIQQLKLSM R L L E R S 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1070.5873 Q9NQG5 Q9NQG5 107 114 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 0.0035841 87.323 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 1 2 1.2522 1.0994 7.7597 11 Median 1.1397 1.1083 4.9084 2 0 Median 1.3094 1.1387 4.9637 2 0 Median 0.96461 0.93745 NaN 1 0 Median 1.3161 1.1164 2.4962 3 0 Median 1.0339 1.0425 NaN 1 0 Median 1.2189 0.97431 1.7691 2 0 Median 57084000 28085000 28998000 8447700 3938800 4508800 1946000 834640 1111400 24625000 12694000 11931000 2445100 1004200 1440900 18499000 9095100 9403400 1121300 518250 603010 21323 4062 22235 112398;112399;112400;112401;112402;112403;112404;112405;112406;112407;112408 113562;113563;113564;113565;113566;113567;113568;113569;113570 113564 9 LLNLYPR DENRFVAVTSSNAAKLLNLYPRKGRIIPGA VTSSNAAKLLNLYPRKGRIIPGADADVVVW K L L P R K 0 1 1 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 1 0 0 0 7 0 887.52289 Q9BPU6 Q9BPU6 384 390 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2 0.0068426 91.584 By MS/MS By matching By MS/MS 2 1 1 0.96747 0.94187 11.129 4 Median 0.96747 0.94475 12.833 2 0 Median 1.1854 1.0282 NaN 1 0 Median 0.82646 0.84008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23148000 12004000 11143000 11855000 5678800 6176500 3866200 1862500 2003700 7426100 4463000 2963100 0 0 0 0 0 0 0 0 0 21324 3776 22236 112409;112410;112411;112412 113571;113572;113573 113571 3 LLNNAFEELVAFQR NVNDLRRKNEKRANRLLNNAFEELVAFQRA RLLNNAFEELVAFQRALKDFVASIDATYAK R L L Q R A 2 1 2 0 0 1 2 0 0 0 3 0 0 2 0 0 0 0 0 1 0 0 14 0 1662.873 P25205;J3KQ69;A0A499FHX9 P25205 65 78 MCM3 DNA replication licensing factor MCM3 yes no 2;3 3.6343E-10 106.29 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 6 2 2 1 0.94489 0.9317 15.248 15 Median 0.96167 0.92989 18.761 5 0 Median 1.1176 0.97641 17.749 6 0 Median 0.84711 0.90395 4.2775 2 0 Median NaN NaN NaN 0 0 Median 0.87443 0.92575 1.6834 2 0 Median NaN NaN NaN 0 0 Median 86801000 42215000 44586000 26999000 13913000 13087000 41810000 19110000 22701000 16139000 8315700 7822900 0 0 0 1852600 876390 976200 0 0 0 21325 2129 22237 112413;112414;112415;112416;112417;112418;112419;112420;112421;112422;112423;112424;112425;112426;112427;112428 113574;113575;113576;113577;113578;113579;113580;113581;113582;113583;113584 113584 11 LLNPSATR KQGELPREVRRAQARLLNPSATRAKPGPQD VRRAQARLLNPSATRAKPGPQDTVERPFYD R L L T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 870.49232 Q9NZM5;M0QZ34;M0QX73 Q9NZM5 172 179 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.028622 40.268 By MS/MS 1 0.63336 0.63782 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63336 0.63782 NaN 1 0 Median NaN NaN NaN 0 0 Median 2303400 1187800 1115700 0 0 0 0 0 0 0 0 0 0 0 0 2303400 1187800 1115700 0 0 0 21326 4193 22238 112429 113585 113585 1 LLNPSLQK IPEIQKDSLDQFDCKLLNPSLQKVADKRRK LDQFDCKLLNPSLQKVADKRRKDQFKRLIA K L L Q K V 0 0 1 0 0 1 0 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 8 0 911.54402 Q9HAV4 Q9HAV4 1133 1140 XPO5 Exportin-5 yes yes 2 0.004804 79.451 By matching By MS/MS By matching By matching 1 1 1 1 1.0745 0.98804 31.99 4 Median 0.94663 0.94569 NaN 1 0 Median 1.2196 1.0323 NaN 1 0 Median 0.81934 0.87527 NaN 1 0 Median 1.8116 1.7736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14560000 6690400 7869400 1947900 883810 1064100 10791000 5213500 5577400 1360400 428300 932100 460550 164730 295810 0 0 0 0 0 0 21327 4012 22239 112430;112431;112432;112433 113586;113587 113587 2 LLNQEKSELLVEQGR VDCHRELEKLNKESRLLNQEKSELLVEQGR LLNQEKSELLVEQGRLQLQADRHQEHIRAR R L L G R L 0 1 1 0 0 2 3 1 0 0 4 1 0 0 0 1 0 0 0 1 0 0 15 1 1754.9527 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 338 352 RAD50 DNA repair protein RAD50 yes no 2;3 3.103E-10 147.71 By MS/MS By MS/MS By MS/MS 2 2 1 0.88775 0.95969 13.918 4 Median 0.85965 0.87201 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97176 1.1021 8.1673 2 0 Median NaN NaN NaN 0 0 Median 0.78295 0.88538 NaN 1 1 Median NaN NaN NaN 0 0 Median 58137000 29841000 28296000 3327000 1379400 1947600 0 0 0 51245000 26610000 24635000 0 0 0 3564900 1851700 1713100 0 0 0 21328 3561 22240 112434;112435;112436;112437;112438 113588;113589;113590;113591;113592 113589 5 LLNQPNQWPLVK QNSVRLNYGIPAIVKLLNQPNQWPLVKATI IVKLLNQPNQWPLVKATIGLIRNLALCPAN K L L V K A 0 0 2 0 0 2 0 0 0 0 3 1 0 0 2 0 0 1 0 1 0 0 12 0 1448.814 P14923 P14923 488 499 JUP Junction plakoglobin yes yes 2 0.0025974 59.8 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.50993 0.5052 44.999 5 Median 0.50993 0.49898 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48489 0.5052 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.3354 0.34952 65.531 2 1 Median 0.83756 0.73204 NaN 1 0 Median 17459000 11923000 5536000 2509200 1690100 819130 0 0 0 6178100 4539700 1638400 0 0 0 8665000 5634700 3030300 106880 58741 48135 21329 2013 22241 112439;112440;112441;112442;112443 113593;113594;113595;113596;113597;113598 113593 6 LLNSELADALGGLLNR VPNWDCDYYDEKVVKLLNSELADALGGLLN LNSELADALGGLLNRCTAKRINPSETYPAF K L L N R C 2 1 2 1 0 0 1 2 0 0 6 0 0 0 0 1 0 0 0 0 0 0 16 0 1667.9206 Q96GW9 Q96GW9 394 409 MARS2 Methionine--tRNA ligase, mitochondrial yes yes 2 0.0001168 67.776 By MS/MS By matching 1 1 1.586 1.5085 5.2984 2 Median NaN NaN NaN 0 0 Median 1.6703 1.453 NaN 1 0 Median 1.5059 1.5661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2118200 802500 1315700 0 0 0 1410800 568950 841870 707340 233560 473790 0 0 0 0 0 0 0 0 0 21330 3661 22242 112444;112445 113599;113600 113599 2 LLNTFLER QSIYGGRVDNEFDQRLLNTFLERLFTTRSF DNEFDQRLLNTFLERLFTTRSFDSEFKLAC R L L E R L 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1004.5655 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4264 4271 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 3.4848E-05 157.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 1.0753 1.0186 18.416 13 Median 1.0404 1.0008 7.8359 3 0 Plateau 1.1636 0.93015 14.892 3 0 Median 1.0632 1.1036 29.785 3 0 Median NaN NaN NaN 0 0 Median 1.0753 1.1358 11.629 3 0 Median 1.3331 1.1166 NaN 1 0 Median 229370000 110820000 118550000 85352000 42795000 42557000 35139000 16095000 19044000 97923000 46675000 51248000 0 0 0 9985700 4801200 5184500 969180 449340 519830 21331 2865 22243 112446;112447;112448;112449;112450;112451;112452;112453;112454;112455;112456;112457;112458 113601;113602;113603;113604;113605;113606;113607;113608;113609;113610;113611;113612;113613 113606 13 LLNTWTNR ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD SQVPLKRLLNTWTNRYPDAKMDPMNIWDDI R L L N R Y 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 8 0 1016.5403 P78527 P78527 3160 3167 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.2448E-09 170.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1 2 1.3627 1.1419 30.087 12 Median 1.675 1.6243 71.334 2 0 Median 1.3289 1.0984 5.6324 2 0 Median 0.81711 0.87578 14.315 2 0 Median 1.4553 1.2562 5.8928 3 0 Median 0.98631 1.024 NaN 1 1 Median 1.6427 1.3515 7.0843 2 1 Median 151780000 67904000 83873000 23492000 10984000 12508000 51715000 21659000 30056000 39545000 20664000 18881000 26691000 10635000 16056000 6715800 2621500 4094400 3617800 1340300 2277500 21332 2647 22244 112459;112460;112461;112462;112463;112464;112465;112466;112467;112468;112469;112470;112471 113614;113615;113616;113617;113618;113619;113620;113621;113622;113623;113624;113625;113626 113615 13 LLNTWTNRYPDAK ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD KRLLNTWTNRYPDAKMDPMNIWDDIITNRC R L L A K M 1 1 2 1 0 0 0 0 0 0 2 1 0 0 1 0 2 1 1 0 0 0 13 1 1590.8154 P78527 P78527 3160 3172 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 8.2991E-53 234.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 7 2 3 2 0.82367 0.9124 43.232 21 Median 0.82449 0.87143 4.5294 4 1 Median 1.3615 1.2519 38.966 3 0 Plateau 0.81893 0.9124 66.151 7 0 Median 1.314 1.2239 7.9079 2 0 Median 0.73287 0.83519 12.809 3 1 Median 1.3462 1.1839 13.88 2 0 Median 592260000 315500000 276760000 194390000 102540000 91844000 39689000 15803000 23886000 308420000 170960000 137450000 5528500 2392700 3135800 40925000 22221000 18704000 3313100 1572000 1741000 21333 2647 22245 112472;112473;112474;112475;112476;112477;112478;112479;112480;112481;112482;112483;112484;112485;112486;112487;112488;112489;112490;112491;112492 113627;113628;113629;113630;113631;113632;113633;113634;113635;113636;113637;113638;113639;113640;113641;113642;113643;113644;113645;113646;113647;113648;113649;113650;113651;113652;113653;113654;113655;113656;113657 113632 31 LLNVEVPQK PAASGRIICHSYLERLLNVEVPQKVGSEQK HSYLERLLNVEVPQKVGSEQKEPPEEAEPV R L L Q K V 0 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 1038.6073 Q9NQS7 Q9NQS7 362 370 INCENP Inner centromere protein yes yes 2 0.0033292 82.452 By MS/MS 2 0.96307 0.98551 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96307 0.98551 NaN 1 1 Median NaN NaN NaN 0 0 Median 9258600 4568300 4690300 0 0 0 0 0 0 0 0 0 0 0 0 9258600 4568300 4690300 0 0 0 21334 4065 22246 112493;112494 113658;113659 113658 2 LLNVWQVR GITGLYFLSGAVHDRLLNVWQVRSENKEKS SGAVHDRLLNVWQVRSENKEKSAVMSFTVT R L L V R S 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 8 0 1026.5974 Q15061;C9IZK7 Q15061 245 252 WDR43 WD repeat-containing protein 43 yes no 2 0.0023 111.28 By matching By MS/MS 2 3 1.3627 1.3778 5.9721 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6153 1.383 6.5913 2 0 Median 1.3581 1.3778 6.985 3 0 Median NaN NaN NaN 0 0 Median 20912000 8663300 12249000 0 0 0 0 0 0 0 0 0 1803600 678740 1124800 19108000 7984500 11124000 0 0 0 21335 2924 22247 112495;112496;112497;112498;112499 113660;113661;113662;113663 113661 4 LLNYAPLEK CCRRMLLAHVDLIEKLLNYAPLEK______ VDLIEKLLNYAPLEK_______________ K L L E K - 1 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 9 0 1059.5964 P62875 P62875 59 67 POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5 yes yes 2 0.00059348 111.17 By MS/MS By MS/MS By MS/MS 1 1 1 0.82781 0.84138 3.0574 3 Median NaN NaN NaN 0 0 Median 1.0895 0.88458 NaN 1 0 Median 0.82781 0.84138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79178 0.83688 NaN 1 0 Median NaN NaN NaN 0 0 Median 106560000 57102000 49462000 0 0 0 24786000 11512000 13275000 56549000 31122000 25427000 0 0 0 25229000 14468000 10760000 0 0 0 21336 2604 22248 112500;112501;112502 113664;113665;113666;113667;113668;113669;113670 113665 7 LLPAAGPAGGEPYR ______________________________ KLLPAAGPAGGEPYRLLTGVEYVVGRKNCA K L L Y R L 3 1 0 0 0 0 1 3 0 0 2 0 0 0 3 0 0 0 1 0 0 0 14 0 1367.7197 O60934;E5RGU1;E2QRP0 O60934 4 17 NBN Nibrin yes no 2 9.6225E-05 86.344 By MS/MS By MS/MS 3 1 3.7275 3.1994 120.84 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5449 2.5822 170 2 2 Median 3.7275 3.1994 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130330000 37848000 92479000 0 0 0 0 0 0 70911000 31742000 39169000 59415000 6105800 53309000 0 0 0 0 0 0 21337 1641 22249 112503;112504;112505;112506 113671;113672;113673;113674 113673 4 LLPAELPAK QQPVGIRLLEEALLRLLPAELPAKRVRGKA EEALLRLLPAELPAKRVRGKARLPPDVLRW R L L A K R 2 0 0 0 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 9 0 950.58007 P78527 P78527 2900 2908 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 4 0.74822 0.72053 25.802 15 Median 0.74822 0.72053 22.003 3 0 Median 0.98122 0.87671 11.932 3 0 Median 0.58706 0.63872 4.4677 2 0 Median 1.0049 0.95847 9.926 2 0 Median 0.61041 0.63882 NaN 1 0 Median 0.66913 0.55674 30.836 4 0 Median 189520000 106720000 82797000 42962000 26401000 16561000 41618000 21158000 20460000 64165000 38432000 25732000 23310000 10732000 12578000 9002600 5541700 3460900 8461800 4456600 4005100 21338 2647 22250 112507;112508;112509;112510;112511;112512;112513;112514;112515;112516;112517;112518;112519;112520;112521 113675;113676;113677;113678;113679;113680;113681;113682;113683;113684;113685;113686;113687;113688;113689 113681 15 LLPAELPAKR QQPVGIRLLEEALLRLLPAELPAKRVRGKA EALLRLLPAELPAKRVRGKARLPPDVLRWV R L L K R V 2 1 0 0 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 10 1 1106.6812 P78527 P78527 2900 2909 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00047614 122.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 3 3 0.90582 0.88624 21.859 16 Median 0.68869 0.71009 0.54085 2 0 Median 1.127 1.0381 26.542 3 0 Median 0.61695 0.71628 6.1264 3 1 Median 1.1156 1.0579 9.8551 2 0 Median 0.68143 0.77715 14.03 3 0 Median 1.0938 0.97164 12.003 3 0 Median 230480000 130490000 99996000 67115000 38475000 28640000 26679000 12172000 14507000 77555000 47270000 30285000 9112500 4403300 4709300 38570000 22853000 15717000 11451000 5314000 6136900 21339 2647 22251 112522;112523;112524;112525;112526;112527;112528;112529;112530;112531;112532;112533;112534;112535;112536;112537 113690;113691;113692;113693;113694;113695;113696;113697;113698;113699;113700;113701;113702;113703;113704;113705;113706;113707;113708;113709;113710 113703 21 LLPALAAR LGLRRAARPRDALPRLLPALAARLAGPVPA PRDALPRLLPALAARLAGPVPARRPPEACE R L L A R L 3 1 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 823.52797 Q86Y56 Q86Y56 117 124 DNAAF5 Dynein assembly factor 5, axonemal yes yes 2 0.011162 57.463 By MS/MS By MS/MS 1 1 1.0775 0.99414 0.57069 2 Median 1.029 0.99014 NaN 1 0 Median 1.1282 0.99816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5498900 2844500 2654400 4246900 2284100 1962900 1252000 560380 691570 0 0 0 0 0 0 0 0 0 0 0 0 21340 3305 22252 112538;112539 113711;113712;113713 113712 3 LLPALTVLDIHDNQLTSLPSAIR IISNNKLQSLTDDLRLLPALTVLDIHDNQL DIHDNQLTSLPSAIRELENLQKLNVSHNKL R L L I R E 2 1 1 2 0 1 0 0 1 2 6 0 0 0 2 2 2 0 0 1 0 0 23 0 2499.4061 Q9H9A6 Q9H9A6 103 125 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 3 5.8757E-08 46.578 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.94184 0.8172 59.106 5 Median 0.60738 0.59478 NaN 1 0 Median 0.94184 0.8172 NaN 1 0 Median 0.64624 0.68185 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9425 1.9931 6.1978 2 0 Median NaN NaN NaN 0 0 Median 10738000 5626600 5111700 4198400 2575100 1623300 3676400 1650400 2026000 1549700 989690 560020 0 0 0 1313800 411370 902410 0 0 0 21341 3996 22253 112540;112541;112542;112543;112544 113714;113715;113716;113717;113718 113718 5 LLPDDPYEK AITCEYLDEAYPGKKLLPDDPYEKACQKMI AYPGKKLLPDDPYEKACQKMILELFSKVPS K L L E K A 0 0 0 2 0 0 1 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 9 0 1088.539 P78417;Q5TA02;Q5TA01 P78417 102 110 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.00082366 95.909 By MS/MS By MS/MS By MS/MS 1 3 1 0.73764 0.68359 14.95 5 Median 0.73764 0.68006 NaN 1 0 Median 0.83639 0.6972 21.053 3 0 Median 0.72798 0.68359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117470000 66490000 50980000 86068000 48692000 37375000 22866000 12941000 9924900 8535900 4856500 3679400 0 0 0 0 0 0 0 0 0 21342 2646 22254 112545;112546;112547;112548;112549 113719;113720;113721;113722;113723;113724 113724 6 LLPDITLLEPVEGEAAEELSR KDHAKFSPVATASYRLLPDITLLEPVEGEA LLEPVEGEAAEELSRCFSPGVIEVQEVQGK R L L S R C 2 1 0 1 0 0 5 1 0 1 5 0 0 0 2 1 1 0 0 1 0 0 21 0 2293.2053 O15160;A0A2R8YEZ4;A0A2R8Y5D3;A0A2R8YEY5 O15160 235 255 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2;3 0.00035635 28.297 By matching By MS/MS 2 2 0.6011 0.83702 36.777 4 Linear NaN NaN NaN 0 0 Median 0.47547 0.41895 34.803 2 0 Median 0.64902 0.70226 13.347 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6231200 3699400 2531800 0 0 0 1161500 752150 409320 5069700 2947200 2122500 0 0 0 0 0 0 0 0 0 21343 1528 22255 112550;112551;112552;112553 113725;113726;113727;113728 113728 4 LLPDTILEK RKRREELFIEQKKRKLLPDTILEKLTTASQ EQKKRKLLPDTILEKLTTASQTNIKKSPGK K L L E K L 0 0 0 1 0 0 1 0 0 1 3 1 0 0 1 0 1 0 0 0 0 0 9 0 1040.6118 Q9UMY1;H7C2B1 Q9UMY1 113 121 NOL7 Nucleolar protein 7 yes no 2 0.0013697 82.279 By matching By MS/MS By matching 1 1 1 1.0365 1.0309 15.035 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82023 0.79273 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0365 1.0389 NaN 1 0 Median 0.98969 0.80978 NaN 1 0 Median 25091000 11617000 13474000 0 0 0 0 0 0 1633400 700740 932620 0 0 0 20337000 9373100 10964000 3120400 1543000 1577400 21344 4338 22256 112554;112555;112556 113729;113730 113729 2 LLPDTINSINLDR KFSELVMKCLWRMVRLLPDTINSINLDRIL VRLLPDTINSINLDRILLDIHIFMKVFPKE R L L D R I 0 1 2 2 0 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 13 0 1482.8042 Q14008 Q14008 1719 1731 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 6.7811E-07 164.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 1 0.89603 0.80804 26.067 10 Median 0.83981 0.80804 3.3484 2 1 Median NaN NaN NaN 0 0 Median 1.0333 1.1264 35.381 3 0 Plateau 0.939 0.77458 4.9194 3 0 Plateau 1.4123 1.4838 NaN 1 0 Median 0.89884 0.75017 NaN 1 0 Median 63556000 31465000 32091000 13515000 7078900 6436400 0 0 0 37365000 18262000 19103000 8351800 4188100 4163800 3746800 1639900 2106900 576680 295660 281020 21345 2850 22257 112557;112558;112559;112560;112561;112562;112563;112564;112565;112566 113731;113732;113733;113734;113735;113736;113737;113738 113735 8 LLPELLQPYTER QLVVGVADKDLLKSKLLPELLQPYTERVEH KSKLLPELLQPYTERVEHLSEFLVDIKPSL K L L E R V 0 1 0 0 0 1 2 0 0 0 4 0 0 0 2 0 1 0 1 0 0 0 12 0 1470.8082 Q13057 Q13057 236 247 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes yes 2 0.015713 53.683 By MS/MS 1 0.060095 0.05187 NaN 1 Median NaN NaN NaN 0 0 Median 0.060095 0.05187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43476000 42102000 1373300 0 0 0 43476000 42102000 1373300 0 0 0 0 0 0 0 0 0 0 0 0 21346 2783 22258 112567 113739 113739 1 LLPEQLIK ASTEGVAIQGQQGTRLLPEQLIKEAFILSD QGQQGTRLLPEQLIKEAFILSDLFDIGELA R L L I K E 0 0 0 0 0 1 1 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 952.59572 Q92621 Q92621 85 92 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0037995 85.265 By matching By matching By MS/MS By matching By matching 1 1 4 3 1 0.9228 0.88833 22.181 10 Median 0.7267 0.68265 NaN 1 0 Median 1.5651 1.3378 NaN 1 0 Median 0.82568 0.87498 17.889 4 0 Median 1.2381 1.0841 17.464 3 0 Plateau NaN NaN NaN 0 0 Median 0.96992 0.8266 NaN 1 0 Median 40145000 20303000 19842000 1506300 750670 755680 680740 247140 433600 33609000 17346000 16262000 3918300 1781800 2136500 0 0 0 431210 177140 254080 21347 3547 22259 112568;112569;112570;112571;112572;112573;112574;112575;112576;112577 113740;113741;113742;113743;113744 113743 5 LLPEYPGVLSDVQEEK ESDTFFPEIDLEKYKLLPEYPGVLSDVQEE LPEYPGVLSDVQEEKGIKYKFEVYEKND__ K L L E K G 0 0 0 1 0 1 3 1 0 0 3 1 0 0 2 1 0 0 1 2 0 0 16 0 1814.9302 P00374 P00374 159 174 DHFR Dihydrofolate reductase yes yes 2 0.00017621 50.207 By MS/MS By matching 1 2 0.81674 0.69355 11.324 3 Median 0.62156 0.57887 NaN 1 0 Median 0.81732 0.70327 1.9675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18363000 10241000 8122500 15633000 8797000 6836000 2730000 1443600 1286400 0 0 0 0 0 0 0 0 0 0 0 0 21348 1815 22260 112578;112579;112580 113745;113746 113745 2 LLPGLEADSKPGR AETAEAVELSRALSRLLPGLEADSKPGRRR SRLLPGLEADSKPGRRRALEALRRALEEPG R L L G R R 1 1 0 1 0 0 1 2 0 0 3 1 0 0 2 1 0 0 0 0 0 0 13 1 1351.746 Q86Y56 Q86Y56 34 46 DNAAF5 Dynein assembly factor 5, axonemal yes yes 3 0.00029723 62.14 By MS/MS By matching 1 1 0.70188 0.71113 27.121 2 Median 0.57246 0.58704 NaN 1 0 Median 0.86055 0.86146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6214400 3572000 2642400 4522300 2744000 1778300 1692100 828040 864050 0 0 0 0 0 0 0 0 0 0 0 0 21349 3305 22261 112581;112582 113747 113747 1 LLPGPENHR HLGLSVPGLVSVPPRLLPGPENHRAGSNED VSVPPRLLPGPENHRAGSNEDPILAPSGTP R L L H R A 0 1 1 0 0 0 1 1 1 0 2 0 0 0 2 0 0 0 0 0 0 0 9 0 1031.5512 Q8IZL8;C9JFV4 Q8IZL8 723 731 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 0.053179 30.167 By MS/MS 1 0.76455 0.8007 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76455 0.8007 NaN 1 0 Median NaN NaN NaN 0 0 Median 2046900 956740 1090200 0 0 0 0 0 0 0 0 0 0 0 0 2046900 956740 1090200 0 0 0 21350 3351 22262 112583 113748 113748 1 LLPHMHNIVEYMLQR VCRALVMLLEVRMDRLLPHMHNIVEYMLQR LLPHMHNIVEYMLQRTQDQDENVALEACEF R L L Q R T 0 1 1 0 0 1 1 0 2 1 3 0 2 0 1 0 0 0 1 1 0 0 15 0 1892.9753 Q92973 Q92973 258 272 TNPO1 Transportin-1 yes yes 3 1.606E-07 83.729 By MS/MS By MS/MS 2 2 1.0669 1.0286 12.137 4 Median 1.0669 1.0286 3.6154 2 1 Median 1.1064 0.96204 19.598 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58627000 28161000 30466000 9338300 4600400 4737900 49289000 23560000 25729000 0 0 0 0 0 0 0 0 0 0 0 0 21351 3570 22263 112584;112585;112586;112587 113749;113750;113751;113752;113753;113754;113755 113755 7 LLPHQLYGVVPQA FVRPRWIYSCNEKQKLLPHQLYGVVPQA__ QKLLPHQLYGVVPQA_______________ K L L Q A - 1 0 0 0 0 2 0 1 1 0 3 0 0 0 2 0 0 0 1 2 0 0 13 0 1433.8031 F5H8D7;P18887 F5H8D7 590 602 XRCC1 DNA repair protein XRCC1 yes no 2 0.0010312 74.92 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57457000 0 0 1555500 0 0 0 0 0 55901000 0 0 0 0 0 0 0 0 0 0 0 21352 1047 22264 112588;112589;112590 113756;113757;113758 113757 3 LLPLEEHYR FQTVAEGLRQLYAQKLLPLEEHYRFHEFHS QLYAQKLLPLEEHYRFHEFHSPALEDADFD K L L Y R F 0 1 0 0 0 0 2 0 1 0 3 0 0 0 1 0 0 0 1 0 0 0 9 0 1168.6241 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1;Q9NZN4 A0A024R571 47 55 EHD1;EHD2 EH domain-containing protein 1;EH domain-containing protein 2 no no 2 0.00098836 86.794 By MS/MS By matching By matching By matching 2 1 1 1 1.1104 1.0208 32.146 5 Median 0.98867 0.925 13.944 2 0 Median 1.0074 0.85587 NaN 1 0 Median 1.7166 1.6572 NaN 1 0 Median 1.6963 1.5252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84750000 36852000 47898000 53182000 24444000 28738000 6766200 3468000 3298200 13376000 5120300 8255700 11426000 3819300 7606800 0 0 0 0 0 0 21353 5 22265 112591;112592;112593;112594;112595 113759;113760 113759 2 LLPLVSDEVFIR KIGEEFLTDLSQLKKLLPLVSDEVFIRDVA LKKLLPLVSDEVFIRDVAKVKQENKLKFSA K L L I R D 0 1 0 1 0 0 1 0 0 1 3 0 0 1 1 1 0 0 0 2 0 0 12 0 1399.8075 P11216 P11216 522 533 PYGB Glycogen phosphorylase, brain form yes yes 2 3.2601E-06 109.29 By MS/MS By MS/MS By MS/MS 1 2 1 1.0538 1.0177 6.212 4 Median 1.0553 1.0208 NaN 1 0 Median 1.0699 0.97699 5.3291 2 0 Median 1.0231 1.0953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31474000 15040000 16434000 3841800 1814700 2027100 26378000 12679000 13699000 1253500 546000 707490 0 0 0 0 0 0 0 0 0 21354 1956 22266 112596;112597;112598;112599 113761;113762;113763;113764;113765;113766 113766 6 LLPPGAVVAVGASGGK AAFEAEVLHTVLAGRLLPPGAVVAVGASGG LPPGAVVAVGASGGKDSTVLAHVLRALAPR R L L G K D 3 0 0 0 0 0 0 4 0 0 2 1 0 0 2 1 0 0 0 3 0 0 16 0 1391.8136 Q7Z7A3 Q7Z7A3 47 62 CTU1 Cytoplasmic tRNA 2-thiolation protein 1 yes yes 2 0.00011203 68.809 By MS/MS 1 0.72889 0.69685 NaN 1 Median 0.72889 0.69685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4974500 2997000 1977500 4974500 2997000 1977500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21355 3254 22267 112600 113767;113768 113767 2 LLPPYLR LGKKFPVTENSKGYKLLPPYLRVIQGDGVD TENSKGYKLLPPYLRVIQGDGVDINTLQEI K L L L R V 0 1 0 0 0 0 0 0 0 0 3 0 0 0 2 0 0 0 1 0 0 0 7 0 870.53272 P43490;A0A0C4DFS8 P43490 343 349 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.064792 36.556 By MS/MS By matching 1 1 1.1991 1.1148 4.1988 2 Median 1.0952 1.0822 NaN 1 0 Median 1.3129 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5019500 2392200 2627400 4318500 2109200 2209200 701060 282930 418130 0 0 0 0 0 0 0 0 0 0 0 0 21356 2326 22268 112601;112602 113769 113769 1 LLPQAEMFEHLSGK QLCLQQQEKESSLKKLLPQAEMFEHLSGKL KLLPQAEMFEHLSGKLQQFMENKSRMLASG K L L G K L 1 0 0 0 0 1 2 1 1 0 3 1 1 1 1 1 0 0 0 0 0 0 14 0 1598.8127 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4214 4227 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 0.0004805 70.488 By MS/MS By MS/MS 2 1 0.5349 0.72825 30.195 3 Plateau 0.70458 0.70661 38.929 2 1 Median NaN NaN NaN 0 0 Median 0.53292 0.56994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43501000 27125000 16377000 33182000 20230000 12952000 0 0 0 10319000 6894700 3424200 0 0 0 0 0 0 0 0 0 21357 1220 22269 112603;112604;112605 113770;113771;113772 113771 3 LLPQGLAVYASPENKK RGDLVSVKKSLGRNRLLPQGLAVYASPENK LPQGLAVYASPENKKLFEEEKLLRQEGKLE R L L K K L 2 0 1 0 0 1 1 1 0 0 3 2 0 0 2 1 0 0 1 1 0 0 16 1 1726.9618 Q9BYD2;Q5SZR1;A0A1W2PPE5;A0A1W2PQB6;A0A1W2PS92 Q9BYD2 123 138 MRPL9 39S ribosomal protein L9, mitochondrial yes no 3 0.00064708 36.638 By MS/MS By matching 1 1 1.1341 1.1462 7.9789 2 Median 1.0652 1.0833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2075 1.2127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11610000 5571600 6038800 8832500 4204500 4627900 0 0 0 2777900 1367000 1410900 0 0 0 0 0 0 0 0 0 21358 3889 22270 112606;112607 113773;113774 113774 2 LLPQLTYLDGYDR CEVTNLNDYRENVFKLLPQLTYLDGYDRDD FKLLPQLTYLDGYDRDDKEAPDSDAEGYVE K L L D R D 0 1 0 2 0 1 0 1 0 0 4 0 0 0 1 0 1 0 2 0 0 0 13 0 1565.809 P39687;H0YN26;Q92688 P39687 138 150 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B no no 2 0.0001472 83.31 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 2 1 1.0494 0.89702 13.686 7 Median 0.8482 0.79685 7.5762 2 0 Median 1.0494 0.89702 NaN 1 0 Median 0.97141 0.96031 NaN 1 0 Median 1.0944 0.90581 3.439 2 0 Median NaN NaN NaN 0 0 Median 1.4453 1.1792 NaN 1 0 Median 20832000 10503000 10329000 15261000 7947600 7313300 162320 73289 89033 3786300 1745400 2040900 1197100 565560 631490 0 0 0 425130 171050 254080 21359 2282;3549 22271 112608;112609;112610;112611;112612;112613;112614 113775;113776;113777;113778;113779;113780;113781;113782 113779 8 LLPQVLNSWSIGR ACGSRLLRFGILIGRLLPQVLNSWSIGRDS GRLLPQVLNSWSIGRDSLSPGQERPYSTVR R L L G R D 0 1 1 0 0 1 0 1 0 1 3 0 0 0 1 2 0 1 0 1 0 0 13 0 1481.8354 Q8IZL8;C9JFV4 Q8IZL8 401 413 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 5.5866E-05 87.298 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1 1.0674 1.0262 13.73 8 Median NaN NaN NaN 0 0 Median 1.116 0.95447 NaN 1 0 Median 1.0387 1.1265 16.173 2 0 Median 1.2149 1.0475 NaN 1 0 Median 0.97247 1.0253 0.41021 3 0 Median 1.6664 1.4273 NaN 1 0 Median 20451000 10520000 9931000 0 0 0 2469400 1251300 1218100 8742400 4705100 4037400 483690 215020 268670 7709900 3936700 3773200 1045400 411660 633750 21360 3351 22272 112615;112616;112617;112618;112619;112620;112621;112622 113783;113784;113785;113786;113787;113788;113789 113784 7 LLPSALGVK GLCWGDRMPDKDDIRLLPSALGVKKRKRGP DKDDIRLLPSALGVKKRKRGPKKQKENKPG R L L V K K 1 0 0 0 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 9 0 896.5695 Q12873 Q12873 40 48 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.0545 43.808 By MS/MS 1 0.83502 0.93068 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83502 0.93068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718000 1900900 1817200 0 0 0 0 0 0 3718000 1900900 1817200 0 0 0 0 0 0 0 0 0 21361 2766 22273 112623 113790 113790 1 LLPSAPQTLPDGPLASPAR AVPAPSPEHSSPSVRLLPSAPQTLPDGPLA APQTLPDGPLASPARVPMFPVPLPPGPLEP R L L A R V 3 1 0 1 0 1 0 1 0 0 4 0 0 0 5 2 1 0 0 0 0 0 19 0 1900.0418 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1949 1967 SEC16A Protein transport protein Sec16A yes no 2 2.1335E-05 49.627 By MS/MS By matching 2 2 0.47631 0.44001 15.504 4 Median 0.39154 0.38231 4.7342 2 0 Median 0.58037 0.49751 2.2242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12052000 8455100 3597200 10677000 7586000 3091400 1374900 869100 505790 0 0 0 0 0 0 0 0 0 0 0 0 21362 1513 22274 112624;112625;112626;112627 113791;113792 113792 2 LLPSLIGR LSSFDFFLTDARIRRLLPSLIGRHFYQRKK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R L L G R H 0 1 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 8 0 867.55419 O76021;J3QSV6;I3L3C4;I3L3U9 O76021 164 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0022851 118.69 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 2 2 5 2 1.0861 1.0374 26.37 14 Median 2.0984 2.1225 NaN 1 0 Median 1.3972 1.2244 20.815 2 0 Median 0.92275 0.95202 12.468 2 0 Median 1.5316 1.2886 43.123 2 0 Median 1.0294 1.0351 4.6863 5 0 Median 1.1066 0.89407 0.13738 2 0 Median 173340000 84923000 88421000 1988400 732460 1255900 5278300 2365200 2913200 9472500 4842900 4629600 777750 338190 439560 139460000 68926000 70534000 16367000 7718700 8648300 21363 1716 22275 112628;112629;112630;112631;112632;112633;112634;112635;112636;112637;112638;112639;112640;112641 113793;113794;113795;113796;113797;113798;113799;113800;113801;113802;113803;113804;113805;113806 113799 14 LLPSSHVAR IPSCKDVAPVEKTIKLLPSSHVARLQIFSV VEKTIKLLPSSHVARLQIFSVEGQKAIQIK K L L A R L 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 2 0 0 0 1 0 0 9 0 978.56106 A6NHR9;J3KTL8 A6NHR9 1030 1038 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0078737 50.607 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1.0855 0.90745 13.279 5 Median NaN NaN NaN 0 0 Median 0.98152 0.86504 NaN 1 0 Median 0.78302 0.86941 NaN 1 0 Median 1.0999 0.96955 NaN 1 0 Median 1.1519 1.1919 NaN 1 0 Median 1.0855 0.90745 NaN 1 0 Median 6332300 3388800 2943500 0 0 0 490610 224730 265880 3023300 1814800 1208500 756020 354190 401830 893790 449870 443920 1168700 545220 623430 21364 518 22276 112642;112643;112644;112645;112646 113807;113808;113809;113810;113811;113812;113813 113810 7 LLPVFAQTFQQTMLPSIR EPKGDPEMAPIYLKRLLPVFAQTFQQTMLP VFAQTFQQTMLPSIRKASLALIRKMIHFCS R L L I R K 1 1 0 0 0 3 0 0 0 1 3 0 1 2 2 1 2 0 0 1 0 0 18 0 2089.1394 A0A087X2H1;Q9ULT8;G3V4V5 A0A087X2H1 524 541 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 0.044468 21.251 By MS/MS 1 0.74615 0.74944 NaN 1 Median 0.74615 0.74944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1540500 926830 613660 1540500 926830 613660 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21365 137 22277 112647 113814 113814 1 LLPVLVHTFWIDTK QGADTLAFMSLLEEKLLPVLVHTFWIDTKN KLLPVLVHTFWIDTKNYVEVTRKWYAEAMP K L L T K N 0 0 0 1 0 0 0 0 1 1 3 1 0 1 1 0 2 1 0 2 0 0 14 0 1680.9603 Q13505 Q13505 253 266 MTX1 Metaxin-1 yes yes 2 0.0003072 73.781 By matching By MS/MS 1 1 1.0883 0.99356 15.223 2 Median 0.90209 0.89217 NaN 1 0 Median 1.313 1.1065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3225600 1481000 1744600 985710 560870 424840 2239900 920130 1319800 0 0 0 0 0 0 0 0 0 0 0 0 21366 2821 22278 112648;112649 113815 113815 1 LLQAAAGASAR HLCEPDMKLVWPSAKLLQAAAGASARACDS PSAKLLQAAAGASARACDSVTSNVLPLLLE K L L A R A 5 1 0 0 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1027.5774 Q96T76;H7C1W5 Q96T76 374 384 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.00019535 106.2 By MS/MS By MS/MS 2 3 1.3884 1.1633 38.504 5 Median 1.0698 1.0531 0.085314 2 0 Median 1.5526 1.3416 43.685 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22616000 8583100 14033000 5901700 2637700 3264000 16715000 5945400 10769000 0 0 0 0 0 0 0 0 0 0 0 0 21367 3742 22279 112650;112651;112652;112653;112654 113816;113817;113818;113819;113820;113821 113819 6 LLQAETASNSAR MAESEKSQKLEERLRLLQAETASNSARAAE RLRLLQAETASNSARAAERSSALREEVQSL R L L A R A 3 1 1 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1259.647 Q14980 Q14980 1271 1282 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 3.9693E-06 140.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 1.067 0.95877 5.8132 7 Median NaN NaN NaN 0 0 Median 1.1732 1.0004 NaN 1 0 Median 0.87955 0.95877 NaN 1 0 Median 1.1079 0.97499 NaN 1 0 Median 0.9233 0.95941 5.8303 2 1 Median 1.0675 0.8746 0.85497 2 0 Median 108320000 54595000 53728000 0 0 0 9035400 4170200 4865200 40145000 20708000 19436000 4448600 2069100 2379400 36150000 18990000 17160000 18545000 8657200 9887800 21368 2905 22280 112655;112656;112657;112658;112659;112660;112661;112662 113822;113823;113824;113825;113826;113827;113828;113829;113830;113831;113832;113833;113834;113835 113831 14 LLQAFLER PVLWERTGNIPALVRLLQAFLERGSNTIAS NIPALVRLLQAFLERGSNTIASAAADKIPG R L L E R G 1 1 0 0 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 988.57057 P55060 P55060 707 714 CSE1L Exportin-2 yes yes 2 0.002327 138.9 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 4 2 1 2 1.1289 1.0809 20.362 15 Median 1.1289 1.0841 18.336 3 0 Plateau 1.2717 1.0809 1.2233 3 0 Median 0.93104 0.95408 34.671 4 0 Median 1.3688 1.1566 6.2847 2 0 Median 1.0075 1.0082 NaN 1 0 Median 1.4293 1.089 0.23634 2 0 Median 295850000 133920000 161930000 81006000 37575000 43431000 93555000 40656000 52899000 20616000 10595000 10022000 2261800 910620 1351200 36303000 18082000 18222000 62110000 26105000 36005000 21369 2493 22281 112663;112664;112665;112666;112667;112668;112669;112670;112671;112672;112673;112674;112675;112676;112677 113836;113837;113838;113839;113840;113841;113842;113843;113844;113845;113846 113837 11 LLQAGEENQVLELLIHR SRELIEMLAISRNQKLLQAGEENQVLELLI QAGEENQVLELLIHRDGEFQELMKLALNQG K L L H R D 1 1 1 0 0 2 3 1 1 1 5 0 0 0 0 0 0 0 0 1 0 0 17 0 1974.0898 Q9NPJ6;Q5T911 Q9NPJ6 56 72 MED4 Mediator of RNA polymerase II transcription subunit 4 yes no 3 0.01406 20.939 By MS/MS 1 1.0044 0.99513 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0044 0.99513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5562800 2738500 2824400 0 0 0 0 0 0 5562800 2738500 2824400 0 0 0 0 0 0 0 0 0 21370 4056 22282 112678 113847 113847 1 LLQALAQYQNHLQEQPR GRLVKDQEALMKSVKLLQALAQYQNHLQEQ QALAQYQNHLQEQPRKALVDILSEVSKATL K L L P R K 2 1 1 0 0 5 1 0 1 0 4 0 0 0 1 0 0 0 1 0 0 0 17 0 2049.0756 Q9BQG0;I3L1L3 Q9BQG0 162 178 MYBBP1A Myb-binding protein 1A yes no 2;3 7.0736E-14 155.86 By matching By MS/MS By MS/MS By MS/MS By matching 1 5 2 6 2 0.89924 0.88052 21.946 16 Median NaN NaN NaN 0 0 Median 0.88527 0.75412 NaN 1 0 Median 0.91342 1.0033 21.276 5 1 Median 0.98111 0.84672 5.733 2 0 Median 0.99486 1.0124 23.075 6 0 Median 0.8645 0.7179 1.3776 2 0 Median 242260000 125830000 116430000 0 0 0 3374300 1857700 1516500 150980000 78471000 72514000 10409000 5779800 4629200 76258000 39082000 37176000 1235400 639800 595620 21371 3789 22283 112679;112680;112681;112682;112683;112684;112685;112686;112687;112688;112689;112690;112691;112692;112693;112694 113848;113849;113850;113851;113852;113853;113854;113855;113856;113857;113858;113859;113860;113861;113862;113863;113864;113865;113866;113867;113868 113850 21 LLQALAQYQNHLQEQPRK GRLVKDQEALMKSVKLLQALAQYQNHLQEQ ALAQYQNHLQEQPRKALVDILSEVSKATLQ K L L R K A 2 1 1 0 0 5 1 0 1 0 4 1 0 0 1 0 0 0 1 0 0 0 18 1 2177.1705 Q9BQG0;I3L1L3 Q9BQG0 162 179 MYBBP1A Myb-binding protein 1A yes no 3 2.0763E-07 84.874 By MS/MS By matching 1 1 1.0331 1.1708 24.185 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87095 0.98678 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2254 1.3892 NaN 1 0 Median NaN NaN NaN 0 0 Median 10096000 4520400 5575400 0 0 0 0 0 0 7472400 3329000 4143400 0 0 0 2623300 1191400 1432000 0 0 0 21372 3789 22284 112695;112696 113869 113869 1 LLQALHIDGPR TSIAKAPAVQDLLTRLLQALHIDGPRSAQV LLTRLLQALHIDGPRSAQVAQSLLKEEASW R L L P R S 1 1 0 1 0 1 0 1 1 1 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1231.7037 Q9NU22 Q9NU22 3350 3360 MDN1 Midasin yes yes 2;3 0.00017393 79.148 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0193 0.96153 17.349 7 Median NaN NaN NaN 0 0 Median 0.99368 0.83089 33.369 2 1 Median 0.86002 0.90256 3.3319 2 0 Median 1.1701 1.0176 8.0081 2 0 Median 1.0193 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median 65794000 32771000 33024000 0 0 0 11094000 4813500 6280300 51934000 26669000 25265000 1498500 675220 823230 1268000 613300 654720 0 0 0 21373 4112 22285 112697;112698;112699;112700;112701;112702;112703 113870;113871;113872;113873;113874;113875 113872 6 LLQAQGVEVPSK KSQREARARAEATLKLLQAQGVEVPSKDSL TLKLLQAQGVEVPSKDSLPKKRPIYEDKKR K L L S K D 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 12 0 1267.7136 A0A087WUT6;O60841 A0A087WUT6 425 436 EIF5B Eukaryotic translation initiation factor 5B yes no 2 1.9282E-15 150.61 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 1 1.0186 0.89978 7.618 9 Median 0.90224 0.87204 NaN 1 0 Median 1.0326 0.88446 12.508 2 0 Median NaN NaN NaN 0 0 Median 1.0694 0.93324 6.9797 5 2 Median NaN NaN NaN 0 0 Median 1.0131 0.86823 NaN 1 0 Median 79017000 37900000 41117000 8328600 4296900 4031700 14274000 6817300 7457200 0 0 0 54717000 26045000 28672000 0 0 0 1697500 740920 956590 21374 35 22286 112704;112705;112706;112707;112708;112709;112710;112711;112712 113876;113877;113878;113879;113880;113881;113882;113883;113884 113883 9 LLQAQGVEVPSKDSLPK KSQREARARAEATLKLLQAQGVEVPSKDSL QAQGVEVPSKDSLPKKRPIYEDKKRKKIPQ K L L P K K 1 0 0 1 0 2 1 1 0 0 3 2 0 0 2 2 0 0 0 2 0 0 17 1 1808.0044 A0A087WUT6;O60841 A0A087WUT6 425 441 EIF5B Eukaryotic translation initiation factor 5B yes no 2;3 4.0447E-05 65.395 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 2 1 1 0.79036 0.8251 23.205 9 Median 0.7852 0.81905 7.5426 4 0 Median 0.59623 0.56372 NaN 1 0 Median 0.98771 1.1434 4.9112 2 0 Median 0.91387 0.85843 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72605 0.65781 NaN 1 0 Median 99508000 52900000 46608000 54767000 30461000 24306000 566000 297960 268050 40635000 19982000 20653000 2869400 1763300 1106100 0 0 0 670630 396660 273970 21375 35 22287 112713;112714;112715;112716;112717;112718;112719;112720;112721 113885;113886;113887;113888;113889;113890;113891;113892;113893;113894 113891 10 LLQASFK KFQAKLEHEYIHNFKLLQASFKRMNVDKVI HEYIHNFKLLQASFKRMNVDKVIPVEKLVK K L L F K R 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 805.46979 K7EL66;K7ERD8;Q15555;M0QX52 K7EL66 26 32 MAPRE2 Microtubule-associated protein RP/EB family member 2 yes no 2 0.0096554 83.614 By matching By MS/MS By matching 1 2 1 1.5434 1.482 38.358 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7088 1.9046 NaN 1 0 Median 1.1885 1.0077 23.671 2 0 Median 1.7946 1.8437 NaN 1 0 Median NaN NaN NaN 0 0 Median 3459500 1275600 2184000 0 0 0 0 0 0 830820 319650 511170 1502000 601780 900260 1126700 354130 772540 0 0 0 21376 1373 22288 112722;112723;112724;112725 113895 113895 1 LLQAVENGDAEK FRKSDTNEWNKNDDRLLQAVENGDAEKVAS DDRLLQAVENGDAEKVASLLGKKGASATKH R L L E K V 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1285.6514 Q9P0K7;D6RB27;D6R9G4;D6RBY4;D6REL2;D6R9G6;D6RF74;D6RE17;D6RB25;D6RBW6 Q9P0K7 23 34 RAI14 Ankycorbin yes no 2 2.9649E-13 123.88 By MS/MS 2 1.0825 0.92802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0825 0.92802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3110900 1340200 1770700 0 0 0 0 0 0 0 0 0 3110900 1340200 1770700 0 0 0 0 0 0 21377 4204 22289 112726;112727 113896;113897 113897 2 LLQAVTDLGWSRPTLIQEK DSEALGFEHMGLDPRLLQAVTDLGWSRPTL VTDLGWSRPTLIQEKAIPLALEGKDLLARA R L L E K A 1 1 0 1 0 2 1 1 0 1 4 1 0 0 1 1 2 1 0 1 0 0 19 1 2167.2001 Q9NY93;G3V0G3;F8WDT8;F8WEI3 Q9NY93 18 36 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 3 0.016196 19.553 By matching By matching By MS/MS 1 2 2 1.1209 1.1026 6.8208 5 Median NaN NaN NaN 0 0 Median 1.1209 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98671 1.0396 10.591 2 0 Median 1.2333 1.1147 1.55 2 0 Median 14173000 6462900 7710600 0 0 0 452700 134220 318480 0 0 0 0 0 0 9200100 4408000 4792100 4520600 1920700 2600000 21378 4173 22290 112728;112729;112730;112731;112732 113898;113899 113899 2 LLQDANYNVEK QAGYVGEDIESVIAKLLQDANYNVEKAQQG VIAKLLQDANYNVEKAQQGIVFLDEVDKIG K L L E K A 1 0 2 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 11 0 1305.6565 O76031 O76031 339 349 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 2 0.00039997 100.02 By MS/MS 1 1.254 1.051 NaN 1 Median NaN NaN NaN 0 0 Median 1.254 1.051 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10324000 4681100 5642500 0 0 0 10324000 4681100 5642500 0 0 0 0 0 0 0 0 0 0 0 0 21379 1718 22291 112733 113900 113900 1 LLQDFFNGK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI IPKIQKLLQDFFNGKELNKSINPDEAVAYG K L L G K E 0 0 1 1 0 1 0 1 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 0 1080.5604 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2;P17066;P54652 P11142 349 357 HSPA8;HSPA6;HSPA2 Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6;Heat shock-related 70 kDa protein 2 no no 2 0.00040641 132.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 4 1 1.1531 1.0637 11.295 15 Median 1.2476 1.1365 7.0404 3 0 Plateau 1.0863 0.90639 14.449 4 0 Median 1.0466 1.0856 0.84385 2 0 Median 1.2436 1.0511 NaN 1 0 Median 1.1301 1.1337 8.5079 4 0 Median 1.2649 1.0495 NaN 1 0 Median 814460000 365620000 448840000 242000000 110220000 131780000 362600000 160020000 202590000 152710000 70070000 82643000 20063000 8947800 11115000 35970000 15859000 20111000 1113400 510310 603060 21380 1950;2035;2483 22292 112734;112735;112736;112737;112738;112739;112740;112741;112742;112743;112744;112745;112746;112747;112748;112749 113901;113902;113903;113904;113905;113906;113907;113908;113909;113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920 113908 20 LLQDFFNGKELNK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI QKLLQDFFNGKELNKSINPDEAVAYGAAVQ K L L N K S 0 0 2 1 0 1 1 1 0 0 3 2 0 2 0 0 0 0 0 0 0 0 13 1 1564.8249 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2;P17066;P54652 P11142 349 361 HSPA8;HSPA6;HSPA2 Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6;Heat shock-related 70 kDa protein 2 no no 2;3 1.2645E-05 121.5 By MS/MS By matching By MS/MS By matching 5 1 3 2 1.2272 1.1891 22.691 11 Median 1.2724 1.306 21.787 5 0 Median 0.76341 0.71834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.115 1.1891 6.5538 3 0 Median 1.3072 1.1781 7.2914 2 0 Median 108760000 47694000 61063000 90009000 39072000 50938000 1095300 622900 472400 0 0 0 0 0 0 17131000 7759600 9371500 521260 239420 281840 21381 1950;2035;2483 22293 112750;112751;112752;112753;112754;112755;112756;112757;112758;112759;112760 113921;113922;113923;113924;113925;113926;113927;113928 113922 8 LLQDFFNGR LVLVGGSTRIPKVQKLLQDFFNGRDLNKSI IPKVQKLLQDFFNGRDLNKSINPDEAVAYG K L L G R D 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 9 0 1108.5665 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 350 358 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.00026547 139.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 2 5 6 5 3 1.3992 1.2793 19.8 26 Median 1.5029 1.3921 27.511 5 1 Median 1.2009 1.0433 11.585 2 0 Median 1.3817 1.4212 17.067 5 1 Median 1.371 1.187 12.862 6 0 Median 1.4152 1.4284 7.7614 5 0 Median 1.394 1.1977 9.7056 3 0 Median 912100000 370680000 541420000 334860000 132020000 202840000 227020000 97961000 129060000 238970000 95549000 143430000 32017000 12972000 19044000 69898000 28123000 41775000 9331100 4054500 5276600 21382 278 22294 112761;112762;112763;112764;112765;112766;112767;112768;112769;112770;112771;112772;112773;112774;112775;112776;112777;112778;112779;112780;112781;112782;112783;112784;112785;112786 113929;113930;113931;113932;113933;113934;113935;113936;113937;113938;113939;113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951;113952;113953;113954;113955;113956;113957;113958;113959 113932 31 LLQDFFNGRDLNK LVLVGGSTRIPKVQKLLQDFFNGRDLNKSI QKLLQDFFNGRDLNKSINPDEAVAYGAAVQ K L L N K S 0 1 2 2 0 1 0 1 0 0 3 1 0 2 0 0 0 0 0 0 0 0 13 1 1578.8154 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 350 362 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.047174 26.969 By MS/MS 1 1.3748 1.3799 NaN 1 Median 1.3748 1.3799 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8162900 3987400 4175500 8162900 3987400 4175500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21383 278 22295 112787 113960 113960 1 LLQDFNR DKFKTLSEKNNITQKLLQDFNRFLNTTFSF EKNNITQKLLQDFNRFLNTTFSFFPPFVSC K L L N R F 0 1 1 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 904.47667 P78527 P78527 2836 2842 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00024552 146.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 3 2 0.95628 0.96558 19.074 14 Median 0.98376 0.95348 NaN 1 0 Median 1.3622 1.0867 35.592 3 1 Median 0.92956 0.96392 16.491 3 0 Plateau 1.3174 1.1539 5.2768 2 1 Median 0.84371 0.94238 6.7755 3 1 Plateau 1.3366 1.0938 7.1673 2 1 Median 302760000 144340000 158430000 34498000 17453000 17044000 82574000 34868000 47707000 121790000 63153000 58633000 25362000 10426000 14935000 22925000 11892000 11033000 15618000 6544000 9073900 21384 2647 22296 112788;112789;112790;112791;112792;112793;112794;112795;112796;112797;112798;112799;112800;112801;112802 113961;113962;113963;113964;113965;113966;113967;113968;113969;113970;113971;113972;113973;113974;113975;113976;113977;113978;113979;113980;113981 113965 21 LLQDHPWLLSQNLVVKPDQLIK RFKYARVTPDTDWARLLQDHPWLLSQNLVV LLSQNLVVKPDQLIKRRGKLGLVGVNLTLD R L L I K R 0 0 1 2 0 3 0 0 1 1 6 2 0 0 2 1 0 1 0 2 0 0 22 1 2596.4741 P53396;K7ESG8 P53396 43 64 ACLY ATP-citrate synthase yes no 3;4 1.4044E-14 89.663 By MS/MS By MS/MS 1 6 0.9262 0.85802 12.458 7 Median 0.92373 0.97467 NaN 1 0 Median 0.9301 0.8566 11.441 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151400000 77742000 73661000 3141900 1748300 1393600 148260000 75994000 72267000 0 0 0 0 0 0 0 0 0 0 0 0 21385 2467 22297 112803;112804;112805;112806;112807;112808;112809 113982;113983;113984;113985 113985 4 LLQDKNEQAVQSAQTIQQLEDQLQQK ELQSACDALKDQNSKLLQDKNEQAVQSAQT SAQTIQQLEDQLQQKSKEISQFLNRLPLQQ K L L Q K S 2 0 1 2 0 9 2 0 0 1 4 2 0 0 0 1 1 0 0 1 0 0 26 1 3023.5524 Q14789;E7EU81;H0Y867 Q14789 405 430 GOLGB1 Golgin subfamily B member 1 yes no 3 5.5884E-40 107.9 By MS/MS 1 1.0665 1.1612 NaN 1 Median 1.0665 1.1612 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21964000 6852600 15111000 21964000 6852600 15111000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21386 2900 22298 112810 113986 113986 1 LLQDSVDFSLADAINTEFK RSSAVRLRSSVPGVRLLQDSVDFSLADAIN SVDFSLADAINTEFKNTRTNEKVELQELND R L L F K N 2 0 1 3 0 1 1 0 0 1 3 1 0 2 0 2 1 0 0 1 0 0 19 0 2125.0579 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 79 97 VIM Vimentin yes no 2 0.00015436 40.577 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.2004 1.1533 32.048 5 Median NaN NaN NaN 0 0 Median 1.7661 1.505 36.906 2 0 Median 1.0989 1.1256 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2004 1.1533 NaN 1 0 Median 0.92406 0.79736 NaN 1 0 Median 9741800 3846300 5895500 0 0 0 6493300 2438800 4054500 1641300 696190 945080 0 0 0 1528700 676500 852170 78611 34771 43840 21387 1907 22299 112811;112812;112813;112814;112815 113987;113988;113989;113990 113989 4 LLQDTVQR TFQQLQKPPSPARPRLLQDTVQRLMLPHGR PSPARPRLLQDTVQRLMLPHGRLSLVTGQS R L L Q R L 0 1 0 1 0 2 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 971.53999 G3V470;G3V2A4;G3V5X7;Q99973 G3V470 1148 1155 TEP1 Telomerase protein component 1 yes no 2 0.0062036 72.234 By MS/MS By MS/MS By MS/MS 3 1 1 1.2095 0.99813 78.802 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2095 1.0089 16.735 3 0 Median 0.18787 0.18848 NaN 1 1 Median 1.2368 0.99813 NaN 1 0 Median 53068000 38520000 14548000 0 0 0 0 0 0 0 0 0 10035000 4331500 5703400 33755000 29884000 3871900 9278100 4305400 4972700 21388 1107 22300 112816;112817;112818;112819;112820 113991;113992;113993;113994;113995 113992 5 LLQEALK LLYKAEGVKIRDDERLLQEALKRKEKRRAQ VKIRDDERLLQEALKRKEKRRAQRQRRWEK R L L L K R 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 813.496 O75683 O75683 288 294 SURF6 Surfeit locus protein 6 yes yes 2 0.0073411 89.673 By matching By MS/MS By MS/MS 1 1 1 1.0568 1.0076 9.7423 3 Median NaN NaN NaN 0 0 Median 1.1618 1.0173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0568 1.0076 NaN 1 0 Median 1.027 0.85541 NaN 1 1 Median 11329000 4932400 6396800 0 0 0 1003100 452710 550420 0 0 0 0 0 0 8013600 3374000 4639600 2312500 1105700 1206800 21389 1690 22301 112821;112822;112823 113996;113997;113998 113996 3 LLQEDSSPLLR ELARQTHGILEYYCRLLQEDSSPLLRCALC YYCRLLQEDSSPLLRCALCIGGMSVKEQME R L L L R C 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 2 0 0 0 0 0 0 11 0 1269.6929 Q9UJV9;A0A499FJW5;H0Y8L8 Q9UJV9 283 293 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 2 0.000182 110.87 By MS/MS By MS/MS By MS/MS 1 1 1 1.4703 1.2742 22.299 3 Median NaN NaN NaN 0 0 Median 1.4703 1.2742 NaN 1 0 Median 1.0889 1.108 NaN 1 0 Median 2.0532 1.7146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18613000 9430700 9182600 0 0 0 4346400 2171200 2175200 12260000 6528700 5730900 2007400 730870 1276500 0 0 0 0 0 0 21390 4299 22302 112824;112825;112826 113999;114000;114001;114002;114003 114000 5 LLQEHSGIFGFSVSHTTR LSGPSGAGKSTLLKRLLQEHSGIFGFSVSH EHSGIFGFSVSHTTRNPRPGEENGKDYYFV R L L T R N 0 1 0 0 0 1 1 2 2 1 2 0 0 2 0 3 2 0 0 1 0 0 18 0 2015.0225 B1ANH6;Q16774;B1ANH0;B1ANG9;B1ANH2 B1ANH6 24 41 GUK1 Guanylate kinase yes no 3;4 7.9942E-13 109.72 By MS/MS By matching 2 2 1.4275 1.2827 20.497 4 Median 1.1365 1.0792 1.1125 2 0 Median 1.8083 1.5378 2.336 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38776000 17313000 21463000 36095000 16288000 19808000 2680600 1025000 1655600 0 0 0 0 0 0 0 0 0 0 0 0 21391 574 22303 112827;112828;112829;112830 114004;114005;114006;114007 114004 4 LLQEIVR NTRKLWSMHLHVQAKLLQEIVRSFSGTTCQ MHLHVQAKLLQEIVRSFSGTTCQPIQHMLR K L L V R S 0 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 869.53345 Q69YN4;H0YBN5 Q69YN4 1157 1163 KIAA1429 Protein virilizer homolog yes no 2 0.0083653 86.086 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.1069 1.1017 5.9763 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0277 1.1114 1.2439 2 0 Median 1.1926 1.0477 NaN 1 0 Median 1.1069 1.1612 NaN 1 0 Median 1.1886 0.99705 NaN 1 0 Median 20905000 10189000 10716000 0 0 0 0 0 0 15108000 7508000 7599900 2600400 1261000 1339400 2345900 1080600 1265300 850670 339230 511440 21392 3130 22304 112831;112832;112833;112834;112835 114008;114009;114010;114011 114008 4 LLQELSHPNIIGLLDAFGHK EAKDGINRTALREIKLLQELSHPNIIGLLD SHPNIIGLLDAFGHKSNISLVFDFMETDLE K L L H K S 1 0 1 1 0 1 1 2 2 2 5 1 0 1 1 1 0 0 0 0 0 0 20 0 2214.2161 P50613;D6RAD4 P50613 65 84 CDK7 Cyclin-dependent kinase 7 yes no 3 0.057715 8.089 By MS/MS 2 0.96662 0.81737 0.95732 2 Median NaN NaN NaN 0 0 Median 0.96662 0.81737 0.95732 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5355500 2840400 2515100 0 0 0 5355500 2840400 2515100 0 0 0 0 0 0 0 0 0 0 0 0 21393 2419 22305 112836;112837 114012 114012 1 LLQEQHQLSSR SADETIGVVHLVLRRLLQEQHQLSSRRLLN VLRRLLQEQHQLSSRRLLNFDTELSTKEMR R L L S R R 0 1 0 0 0 3 1 0 1 0 3 0 0 0 0 2 0 0 0 0 0 0 11 0 1337.7052 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4698 4708 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.0037716 54.7 By MS/MS By MS/MS 1 1 1.0153 0.93636 32.428 2 Median 0.74351 0.74449 NaN 1 1 Median 1.3865 1.1777 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4708200 2005300 2702900 1140300 688880 451400 3567900 1316400 2251500 0 0 0 0 0 0 0 0 0 0 0 0 21394 189 22306 112838;112839 114013;114014 114014 2 LLQFLAGQQVNPTK RNVEHMAEVHIDIRKLLQFLAGQQVNPTKA KLLQFLAGQQVNPTKALCNIVNNKMVHFDL K L L T K A 1 0 1 0 0 3 0 1 0 0 3 1 0 1 1 0 1 0 0 1 0 0 14 0 1555.8722 O60921 O60921 237 250 HUS1 Checkpoint protein HUS1 yes yes 2 5.4254E-05 84.658 By MS/MS By matching By matching By matching 1 1 1 1 0.89911 0.83971 7.8313 4 Median 0.85445 0.80077 NaN 1 0 Median 1.0477 0.88674 NaN 1 0 Median 0.90034 0.88054 NaN 1 0 Median 0.89788 0.75386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9642900 4885800 4757100 7131500 3640400 3491100 1363600 639550 724000 996070 524860 471210 151820 81005 70817 0 0 0 0 0 0 21395 1639 22307 112840;112841;112842;112843 114015;114016 114016 2 LLQFPELR AAPYFQQLRQTTAPRLLQFPELRLVQFDSG RQTTAPRLLQFPELRLVQFDSGKLEALAIL R L L L R L 0 1 0 0 0 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1014.5862 Q96L91 Q96L91 1884 1891 EP400 E1A-binding protein p400 yes yes 2 0.0023142 112.17 By MS/MS By matching By matching 1 1 1 0.89937 0.84691 34.564 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79383 0.84691 NaN 1 0 Median 0.89937 0.77995 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7226 1.4726 NaN 1 0 Median 6973300 3747900 3225500 0 0 0 0 0 0 6350100 3526700 2823400 256560 139240 117320 0 0 0 366710 81955 284750 21396 3700 22308 112844;112845;112846 114017;114018;114019;114020 114019 4 LLQFVTGTSR FWKAVLLMDAEKRIRLLQFVTGTSRVPMNG EKRIRLLQFVTGTSRVPMNGFAELYGSNGP R L L S R V 0 1 0 0 0 1 0 1 0 0 2 0 0 1 0 1 2 0 0 1 0 0 10 0 1120.6241 Q96PU5;K7EKL1;K7ERN1;H0Y8X6;A0A1B0GVY1;P46934 Q96PU5 898 907 NEDD4L;NEDD4 E3 ubiquitin-protein ligase NEDD4-like;E3 ubiquitin-protein ligase NEDD4 yes no 2 0.0057065 50.04 By MS/MS 2 0.69531 0.63148 29.527 2 Median NaN NaN NaN 0 0 Median 0.69531 0.63148 29.527 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5282800 2675100 2607700 0 0 0 5282800 2675100 2607700 0 0 0 0 0 0 0 0 0 0 0 0 21397 3714 22309 112847;112848 114021 114021 1 LLQGAVGR L L G R 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 812.48684 REV__A8MQ27 yes yes 2 0.013171 53.554 By MS/MS 1 1.719 1.4757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.719 1.4757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 595150 223150 372000 0 0 0 0 0 0 0 0 0 595150 223150 372000 0 0 0 0 0 0 + 21398 4515 22310 112849 114022 114022 1 LLQGKEPVIR GPHTHSPWFTSLVLRLLQGKEPVIRLVQSQ SLVLRLLQGKEPVIRLVQSQVARYPFHKQP R L L I R L 0 1 0 0 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 1 1151.7026 Q9BU23 Q9BU23 529 538 LMF2 Lipase maturation factor 2 yes yes 2 0.0016895 94.302 By MS/MS By MS/MS By MS/MS 1 1 1 1.0811 0.97964 15.173 3 Plateau 0.88938 0.91578 NaN 1 0 Median 1.3142 1.2238 NaN 1 0 Median 0.84843 0.97964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11796000 5833800 5962300 4918600 2739800 2178800 5471200 2342200 3129000 1406400 751860 654500 0 0 0 0 0 0 0 0 0 21399 3833 22311 112850;112851;112852 114023;114024;114025;114026;114027 114023 5 LLQGRPPLDFYPPGVHPSGLVPR FDPRWMMIPPYVDPRLLQGRPPLDFYPPGV DFYPPGVHPSGLVPRERSDSGGSSSEPFDR R L L P R E 0 2 0 1 0 1 0 3 1 0 4 0 0 1 6 1 0 0 1 2 0 0 23 1 2511.375 P48634 P48634 734 756 PRRC2A Protein PRRC2A yes yes 4 0.064831 7.1933 By MS/MS By matching By matching 1 2 1 0.5073 0.57958 24.127 4 Median 0.54473 0.58253 NaN 1 0 Median 0.46276 0.4566 33.009 2 0 Median 0.47245 0.59682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7465200 4972400 2492800 2902500 1927200 975260 3157100 2181600 975560 1405600 863650 541950 0 0 0 0 0 0 0 0 0 21400 2363 22312 112853;112854;112855;112856 114028 114028 1 LLQHGINADDK YGQYEGKVSSVALCKLLQHGINADDKRLQD ALCKLLQHGINADDKRLQDIRVKGEEIYSM K L L D K R 1 0 1 2 0 1 0 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1222.6306 Q96P70 Q96P70 866 876 IPO9 Importin-9 yes yes 2;3 0.0029199 76.228 By MS/MS By matching By matching By matching 2 1 1 1 1.0276 0.97437 26.356 4 Median NaN NaN NaN 0 0 Median 1.8164 1.5812 NaN 1 0 Median 0.83412 0.88209 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90415 0.95186 NaN 1 0 Median 1.1679 0.99741 NaN 1 0 Median 7344000 3337300 4006700 0 0 0 2942800 1266800 1676000 399580 218730 180850 0 0 0 3365800 1554200 1811600 635870 297520 338350 21401 3711 22313 112857;112858;112859;112860;112861 114029;114030 114030 2 LLQHGINADDKR YGQYEGKVSSVALCKLLQHGINADDKRLQD LCKLLQHGINADDKRLQDIRVKGEEIYSMD K L L K R L 1 1 1 2 0 1 0 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1378.7317 Q96P70 Q96P70 866 877 IPO9 Importin-9 yes yes 2;3 8.0144E-05 81.676 By MS/MS By MS/MS By matching 1 2 1 1.1853 1.1242 18.528 4 Median 0.84483 0.8738 NaN 1 0 Median 1.1926 1.1242 0.73057 2 0 Median 1.1939 1.3735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9359600 4344700 5014900 1136400 655990 480450 8038400 3604800 4433700 184740 83930 100820 0 0 0 0 0 0 0 0 0 21402 3711 22314 112862;112863;112864;112865 114031;114032;114033;114034;114035 114035 5 LLQIAGISPHGNALGASMQQQVNQQIPQEK ELEIRRREDEYRFTKLLQIAGISPHGNALG ASMQQQVNQQIPQEKRGGEVLDSSHDDIKL K L L E K R 3 0 2 0 0 7 1 3 1 3 3 1 1 0 2 2 0 0 0 1 0 0 30 0 3197.6615 O76031 O76031 240 269 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 3 0.046548 9.6275 By MS/MS By matching 1 1 0.80362 0.73279 22.019 2 Median 0.65348 0.62714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98825 0.85625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530800 2597400 1933400 4361200 2524000 1837100 0 0 0 0 0 0 169620 73372 96248 0 0 0 0 0 0 21403 1718 22315 112866;112867 114036 114036 1 LLQIIDR EEMTVVEEADDDKKRLLQIIDRDGEEEEEE EADDDKKRLLQIIDRDGEEEEEEEEPLDES R L L D R D 0 1 0 1 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 869.53345 Q8WYA6;A0A087WUB9;A2A2P1 Q8WYA6 59 65 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.015417 85.265 By MS/MS By MS/MS 2 1 1.1244 1.1503 12.656 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1249 1.1263 10.117 2 1 Median 1.1244 0.94001 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52696000 24126000 28571000 0 0 0 0 0 0 50008000 22914000 27094000 2688100 1211800 1476300 0 0 0 0 0 0 21404 28 22316 112868;112869;112870 114037;114038;114039 114037 3 LLQIIER ALKLNSNEARLKFPRLLQIIERYPEETLSL EARLKFPRLLQIIERYPEETLSLMTKEISS R L L E R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 883.5491 P78527 P78527 3468 3474 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00086181 135.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 5 4 3 1.3495 1.2004 17.301 26 Median 1.2848 1.2692 12.421 6 0 Median 1.4058 1.1612 9.8343 4 0 Median 0.91944 0.98164 7.2359 4 0 Median 1.5296 1.3451 14.567 5 0 Median 1.2443 1.2704 29.09 4 0 Median 1.5239 1.1872 8.0394 3 0 Median 288020000 135580000 152450000 52641000 24896000 27746000 65158000 29553000 35604000 105840000 53534000 52305000 38955000 15666000 23290000 20477000 10042000 10435000 4953200 1885800 3067400 21405 2647 22317 112871;112872;112873;112874;112875;112876;112877;112878;112879;112880;112881;112882;112883;112884;112885;112886;112887;112888;112889;112890;112891;112892;112893;112894;112895;112896 114040;114041;114042;114043;114044;114045;114046;114047;114048;114049;114050;114051;114052;114053;114054;114055;114056;114057;114058;114059;114060;114061;114062;114063;114064;114065;114066;114067 114045 28 LLQIIERYPEETLSLMTK ALKLNSNEARLKFPRLLQIIERYPEETLSL IIERYPEETLSLMTKEISSVPCWQFISWIS R L L T K E 0 1 0 0 0 1 3 0 0 2 4 1 1 0 1 1 2 0 1 0 0 0 18 1 2176.1813 P78527 P78527 3468 3485 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0070301 34.498 By MS/MS By MS/MS By matching 1 1 2 1.1649 1.0792 12.117 4 Median NaN NaN NaN 0 0 Median 1.2343 1.1557 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86292 0.95747 NaN 1 0 Median 1.2381 1.1201 14.965 2 0 Median 6736600 3149200 3587400 0 0 0 4039000 1570300 2468600 0 0 0 0 0 0 1721000 1069200 651820 976630 509710 466920 21406 2647 22318 112897;112898;112899;112900 114068;114069 114069 2 LLQISSFNGK TVKNLEIFRLKMILRLLQISSFNGKMNALN KMILRLLQISSFNGKMNALNEVNKVISSVS R L L G K M 0 0 1 0 0 1 0 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 10 0 1105.6132 Q93008;O00507 Q93008 342 351 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0005372 117.04 By MS/MS By MS/MS By matching 2 2 1 1.2641 1.1155 69.468 5 Median 1.1447 1.1468 18.99 2 0 Median 1.2872 1.1336 2.2793 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23644 0.2448 NaN 1 0 Median NaN NaN NaN 0 0 Median 30242000 15725000 14517000 15375000 7404900 7970500 10477000 4530100 5947100 0 0 0 0 0 0 4389000 3789800 599190 0 0 0 21407 3573 22319 112901;112902;112903;112904;112905 114070;114071;114072 114072 3 LLQKRQEEEER L L E R 0 2 0 0 0 2 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 2 1456.7634 REV__H7C5G6 yes no 2 0.012351 50.123 By matching By MS/MS 1 2 0.93445 1.0692 6.3813 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1233 1.1942 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93445 1.0692 0 2 0 Median NaN NaN NaN 0 0 Median 5571900 2272300 3299600 0 0 0 0 0 0 218520 111510 107010 0 0 0 5353400 2160800 3192600 0 0 0 + 21408 4529 22320 112906;112907;112908 114073;114074 114074 2 LLQLGQQPR ERLRAARVQEQVRARLLQLGQQPRHNGAAE EQVRARLLQLGQQPRHNGAAEPEPEAETAR R L L P R H 0 1 0 0 0 3 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1051.6138 Q9Y446;E9PQ15 Q9Y446 54 62 PKP3 Plakophilin-3 yes no 2 0.0024179 72.138 By MS/MS By MS/MS By MS/MS 1 1 1 1.4354 1.1415 22.767 3 Median 0.82122 0.80179 NaN 1 0 Median 1.4492 1.2269 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4354 1.1415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5113900 2354800 2759100 2720800 1281100 1439600 1964100 903510 1060600 0 0 0 429040 170150 258900 0 0 0 0 0 0 21409 4437 22321 112909;112910;112911 114075;114076;114077;114078 114075 4 LLQLLGR RLPVRAWADVRRESRLLQLLGRLPLFGLGR ADVRRESRLLQLLGRLPLFGLGRLVTRKSW R L L G R L 0 1 0 0 0 1 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 7 0 811.52797 C9JJ19;P82930 C9JJ19 64 70 MRPS34 28S ribosomal protein S34, mitochondrial yes no 2 0.0031288 122.5 By MS/MS By MS/MS By MS/MS 1 1 1 1.2395 1.1841 3.1809 3 Median 1.1804 1.121 NaN 1 0 Median 1.4012 1.1848 NaN 1 0 Median 1.2395 1.1841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27895000 12254000 15641000 17762000 7943900 9817600 6249900 2606000 3643800 3883200 1703700 2179500 0 0 0 0 0 0 0 0 0 21410 702 22322 112912;112913;112914 114079;114080;114081 114079 3 LLQLQEMGNR KSKVEEKLQEDSRRKLLQLQEMGNRESVIK DSRRKLLQLQEMGNRESVIKINLERAVGQL K L L N R E 0 1 1 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 0 0 0 0 10 0 1200.6285 B1AJZ9 B1AJZ9 468 477 FHAD1 Forkhead-associated domain-containing protein 1 yes yes 2 0.00037046 81.548 By MS/MS 1 1.0709 0.88888 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0709 0.88888 NaN 1 0 Median 3958000 1971700 1986300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3958000 1971700 1986300 21411 565 22323 112915 114082;114083 114083 2 LLQLQEQMR EMRQMGQPCDAYQKRLLQLQEQMRALYKAI DAYQKRLLQLQEQMRALYKAISVPRVRRAS R L L M R A 0 1 0 0 0 3 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 9 0 1157.6227 P15924 P15924 142 150 DSP Desmoplakin yes yes 2 2.3638E-16 190.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 5 2 0.68178 0.69362 95.347 19 Median 0.8096 0.76742 72.1 3 2 Plateau 0.77468 0.62622 161.4 3 1 Median 0.72101 0.77371 48.867 2 2 Median 0.31998 0.25656 105.78 4 2 Median 0.68072 0.69487 58.559 5 2 Median 1.1265 0.92787 6.9811 2 0 Median 126110000 72816000 53295000 25762000 14728000 11034000 22439000 12067000 10372000 22139000 13113000 9026000 8550200 5378200 3172000 44008000 26051000 17957000 3213300 1478600 1734700 21412 2021 22324 112916;112917;112918;112919;112920;112921;112922;112923;112924;112925;112926;112927;112928;112929;112930;112931;112932;112933;112934 114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094;114095;114096;114097;114098;114099;114100;114101;114102;114103;114104;114105 114091 22 LLQLTEK LLARKHYASEEIKEKLLQLTEKRKEMIDKW ASEEIKEKLLQLTEKRKEMIDKWEDRWEWL K L L E K R 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 7 0 843.50657 Q01082;A0A087WUZ3 Q01082 1992 1998 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.005536 101.69 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.57804 0.52282 56.141 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81259 0.89438 NaN 1 1 Median 0.89421 0.8058 NaN 1 1 Median 0.29329 0.30712 NaN 1 1 Median 0.41119 0.33922 NaN 1 1 Median 47999000 30967000 17032000 0 0 0 0 0 0 25512000 13645000 11867000 5328700 2816600 2512100 15077000 12980000 2096800 2081200 1525700 555480 21413 2681 22325 112935;112936;112937;112938 114106;114107;114108;114109 114106 4 LLQLVEDR LISVLREANQAINPKLLQLVEDRGSGRSRG NQAINPKLLQLVEDRGSGRSRGRGGMKDDR K L L D R G 0 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 984.5604 J3KTA4;P17844 J3KTA4 471 478 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.00011763 137.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 5 6 1.1806 1.0373 19.355 18 Median 0.77812 0.72987 NaN 1 1 Median 0.93744 0.8095 NaN 1 1 Median 0.95034 0.94107 24.557 3 0 Median 1.3462 1.1428 10.83 2 0 Median 1.1734 1.203 10.355 5 0 Median 1.2254 1.0045 16.958 6 0 Median 511500000 243420000 268090000 57743000 34626000 23117000 32784000 17574000 15210000 233470000 111760000 121710000 19636000 8120400 11516000 115400000 49241000 66162000 52468000 22095000 30374000 21414 1334 22326 112939;112940;112941;112942;112943;112944;112945;112946;112947;112948;112949;112950;112951;112952;112953;112954;112955;112956;112957 114110;114111;114112;114113;114114;114115;114116;114117;114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132;114133;114134;114135;114136 114110 27 LLQLWEK SFLAVEEDKQQKIARLLQLWEKNGYFDDSI DKQQKIARLLQLWEKNGYFDDSIIQQLQSP R L L E K N 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 7 0 928.5382 J3QK89;Q8IWX8 J3QK89 274 280 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.012003 79.116 By MS/MS By MS/MS By matching 1 3 1 0.98276 0.8346 20.237 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62333 0.67347 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98276 1.0098 22.553 3 0 Median 0.98748 0.8346 NaN 1 0 Median 17882000 9031400 8850900 0 0 0 0 0 0 5735100 3290400 2444700 0 0 0 11912000 5623500 6288200 235480 117480 118010 21415 1338 22327 112958;112959;112960;112961;112962 114137;114138;114139;114140 114140 4 LLQMQPAQHGEIIK RDEIVVAESVVVIKKLLQMQPAQHGEIIKH KLLQMQPAQHGEIIKHMAKLLDSITVPVAR K L L I K H 1 0 0 0 0 3 1 1 1 2 2 1 1 0 1 0 0 0 0 0 0 0 14 0 1604.8708 O00203;A0A590UJU0;A0A590UJ60;A0A590UK04;A0A2R8Y2A8;A0A590UKC4;Q13367;A0A590UJW5;A0A590UKD3;A0A590UJU7;A0A590UJE5;A0A590UK30 O00203 468 481 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 2;3 0.0092219 34.755 By MS/MS By matching 2 1 0.81733 0.79237 13.679 3 Median 0.8255 0.80243 1.7836 2 0 Median 0.7334 0.63379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17595000 9177500 8417900 14059000 7289800 6769700 3535900 1887700 1648200 0 0 0 0 0 0 0 0 0 0 0 0 21416 1447 22328 112963;112964;112965 114141;114142;114143 114141 3 LLQNQIQQQTWTDEGTPSMR GYMDLASRLVTRVFKLLQNQIQQQTWTDEG IQQQTWTDEGTPSMRELRSALLEFACTHNL K L L M R E 0 1 1 1 0 5 1 1 0 1 2 0 1 0 1 1 3 1 0 0 0 0 20 0 2373.1383 Q9UIQ6 Q9UIQ6 798 817 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 3 4.3879E-09 79.88 By MS/MS 1 0.93302 0.87695 NaN 1 Median 0.93302 0.87695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9444200 5148500 4295800 9444200 5148500 4295800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21417 4292 22329 112966 114144 114144 1 LLQQEEDKKIQLAK TIQHEKPDLEEQKTKLLQQEEDKKIQLAKL KLLQQEEDKKIQLAKLEESLLETLATSQGN K L L A K L 1 0 0 1 0 3 2 0 0 1 3 3 0 0 0 0 0 0 0 0 0 0 14 2 1682.9567 Q8NCM8 Q8NCM8 3422 3435 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 4 0.044408 15.291 By MS/MS 1 0.63327 0.74803 NaN 1 Median 0.63327 0.74803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1873500 1008300 865180 1873500 1008300 865180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21418 3418 22330 112967 114145 114145 1 LLQQEEEIK ______________________________ SECSARLLQQEEEIKSLTAEIDRLKNCGCL R L L I K S 0 0 0 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1128.6027 P54136;E5RJM9;E5RH09 P54136 12 20 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 8.5976E-05 148.38 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1464 1.0187 28.26 5 Median 0.80115 0.77429 45.317 2 0 Median 1.225 1.0187 NaN 1 0 Median 0.71894 0.75013 NaN 1 0 Median 1.2465 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85344000 36943000 48401000 33992000 15674000 18317000 43114000 18363000 24751000 6035900 2047800 3988100 2201900 857140 1344700 0 0 0 0 0 0 21419 2480 22331 112968;112969;112970;112971;112972 114146;114147;114148;114149;114150 114147 5 LLQQEEEIKSLTAEIDR ______________________________ QQEEEIKSLTAEIDRLKNCGCLGASPNLEQ R L L D R L 1 1 0 1 0 2 4 0 0 2 3 1 0 0 0 1 1 0 0 0 0 0 17 1 2014.0582 P54136;E5RJM9;E5RH09 P54136 12 28 RARS Arginine--tRNA ligase, cytoplasmic yes no 3 0.024443 27.85 By MS/MS 1 0.88485 0.88844 NaN 1 Median 0.88485 0.88844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6704600 2677400 4027200 6704600 2677400 4027200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21420 2480 22332 112973 114151 114151 1 LLQQGTAPAQAK AFVKALQQEQEIEQRLLQQGTAPAQAKAEP EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI R L L A K A 3 0 0 0 0 3 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 12 0 1224.6826 Q86YP4 Q86YP4 476 487 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.0033572 46.335 By MS/MS By matching By MS/MS 1 1 3 0.89383 0.85057 12.882 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80057 0.85057 NaN 1 0 Median 0.89383 0.78235 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.084 0.91863 17.706 3 0 Plateau 6399600 3182500 3217100 0 0 0 0 0 0 4303500 2265000 2038500 451810 211760 240040 0 0 0 1644200 705680 938550 21421 3309 22333 112974;112975;112976;112977;112978 114152;114153 114152 2 LLQQLAMTGSEEGDPR PINEVARFNLMQVGRLLQQLAMTGSEEGDP LQQLAMTGSEEGDPRTKSSLGKFDKSCVAA R L L P R T 1 1 0 1 0 2 2 2 0 0 3 0 1 0 1 1 1 0 0 0 0 0 16 0 1743.8461 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;H0Y7I9;H0Y4E7;A0A0A0MQV8 Q14C86 347 362 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 3.0966E-08 99.522 By MS/MS 1 1.0342 0.97121 NaN 1 Median 1.0342 0.97121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10130000 5163500 4966100 10130000 5163500 4966100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21422 2907 22334 112979 114154 114154 1 LLQQLFLK EAYSLSDNDYDGIKKLLQQLFLKAPVNTAE DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ K L L L K A 0 0 0 0 0 2 0 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 8 0 1001.6274 Q9P287 Q9P287 77 84 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 2 0.0062036 72.234 By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1.2285 1.0715 27.021 8 Median 1.3376 1.2649 7.2997 2 0 Median 1.2672 1.0715 11.121 2 0 Median NaN NaN NaN 0 0 Median 1.0489 0.87456 11.193 2 0 Median 1.9187 1.8922 NaN 1 0 Median 1.0695 0.89527 NaN 1 0 Median 33909000 14828000 19082000 17961000 7904100 10057000 13352000 5897000 7455500 0 0 0 1009500 428400 581090 923840 294760 629080 662360 303570 358790 21423 4218 22335 112980;112981;112982;112983;112984;112985;112986;112987 114155;114156 114155 2 LLQQNTQLK QTAEYIFSLEQEKTRLLQQNTQLKRFIQEL EQEKTRLLQQNTQLKRFIQELSGSSPKRRR R L L L K R 0 0 1 0 0 3 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1084.6241 Q01664;I3L254 Q01664 106 114 TFAP4 Transcription factor AP-4 yes no 2 0.0036742 63.48 By MS/MS By matching 1 1 0.92721 0.88326 2.4395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83262 0.89862 NaN 1 0 Median 1.0326 0.86815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3654700 2007500 1647200 0 0 0 0 0 0 3253800 1779000 1474800 400870 228500 172370 0 0 0 0 0 0 21424 2690 22336 112988;112989 114157 114157 1 LLQQNTQLKR QTAEYIFSLEQEKTRLLQQNTQLKRFIQEL QEKTRLLQQNTQLKRFIQELSGSSPKRRRA R L L K R F 0 1 1 0 0 3 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 1 1240.7252 Q01664;I3L254 Q01664 106 115 TFAP4 Transcription factor AP-4 yes no 3 0.0010872 52.79 By MS/MS By MS/MS 1 1 1.0187 1.0184 11.342 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8279 0.93992 NaN 1 0 Median 1.2536 1.1035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2235600 1213900 1021700 0 0 0 0 0 0 1495700 840740 654940 739930 373200 366740 0 0 0 0 0 0 21425 2690 22337 112990;112991 114158;114159;114160;114161 114159 4 LLQQQNDITGLSR LLQQLENVTKERQMKLLQQQNDITGLSRQV MKLLQQQNDITGLSRQVKHVMNFTNWAIAS K L L S R Q 0 1 1 1 0 3 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1484.7947 H0Y612;Q9UPN9 H0Y612 132 144 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 1.3044E-11 140.07 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.2325 1.1319 17.084 4 Median 0.93323 0.90233 NaN 1 0 Median 1.3915 1.2055 NaN 1 0 Median 1.2202 1.3422 NaN 1 1 Median 1.2449 1.0628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13735000 5935400 7799800 5676600 2595300 3081200 1366200 601900 764340 5766400 2336800 3429600 926050 401360 524690 0 0 0 0 0 0 21426 1152 22338 112992;112993;112994;112995 114162;114163;114164 114163 3 LLQQSGAQQFR RKEGKKQNFPRLNRRLLQQSGAQQFRMRVR LNRRLLQQSGAQQFRMRVRWGIQQNSGFGK R L L F R M 1 1 0 0 0 4 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1274.6731 Q96QD9;H9KVD1;H9KVD5 Q96QD9 57 67 FYTTD1 UAP56-interacting factor yes no 2 1.3838E-06 164.57 By matching By MS/MS By MS/MS 1 1 2 0.92799 0.92741 35.471 4 Median 0.96923 1.0159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88851 0.89752 NaN 1 0 Median 0.83218 0.67377 49.819 2 0 Median 32796000 17316000 15480000 7081300 3257900 3823300 0 0 0 0 0 0 0 0 0 14962000 9088500 5873900 10752000 4969400 5782700 21427 3720 22339 112996;112997;112998;112999 114165;114166;114167 114165 3 LLQQVSQIYQSIEFSR LQQYVPQLQNNTILRLLQQVSQIYQSIEFS LQQVSQIYQSIEFSRLTSLVPFVDAFQLER R L L S R L 0 1 0 0 0 4 1 0 0 2 2 0 0 1 0 3 0 0 1 1 0 0 16 0 1938.0211 Q14152 Q14152 439 454 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 6.1853E-10 152.47 By MS/MS By MS/MS By matching By matching By matching 3 5 2 1 1 1.1036 0.97675 28.612 12 Median 1.1289 1.0596 4.358 3 0 Median 1.1857 1.0093 43.338 5 0 Median 0.75678 0.82397 7.2941 2 0 Median 0.857 0.77572 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0925 0.9278 NaN 1 0 Median 62679000 29160000 33518000 14184000 6583400 7600400 46638000 21576000 25062000 1642200 897020 745180 110420 59530 50886 0 0 0 104300 44410 59887 21428 2860 22340 113000;113001;113002;113003;113004;113005;113006;113007;113008;113009;113010;113011 114168;114169;114170;114171;114172;114173;114174;114175 114168 8 LLQSAHPVR SLIWSEDLRVQDVRRLLQSAHPVRVNVVQY VQDVRRLLQSAHPVRVNVVQYPELSDHEFI R L L V R V 1 1 0 0 0 1 0 0 1 0 2 0 0 0 1 1 0 0 0 1 0 0 9 0 1019.5876 Q9H1A4;H0Y564 Q9H1A4 1040 1048 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.015787 43.246 By MS/MS By matching 1 1 0.94507 0.93132 3.6937 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85875 0.95596 NaN 1 0 Median 1.0401 0.90731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1165500 604600 560940 0 0 0 0 0 0 949650 495610 454040 215890 108990 106900 0 0 0 0 0 0 21429 3933 22341 113012;113013 114176;114177 114177 2 LLQSHNLYFGSNMR WWFVAHLTDLLDHCKLLQSHNLYFGSNMRE KLLQSHNLYFGSNMREFLLLEYASGLFAHP K L L M R E 0 1 2 0 0 1 0 1 1 0 3 0 1 1 0 2 0 0 1 0 0 0 14 0 1678.825 Q9BW27;J3KT10;J3QL54;J3QLH0 Q9BW27 386 399 NUP85 Nuclear pore complex protein Nup85 yes no 3 0.00029366 63.185 By MS/MS By MS/MS 1 1 0.86656 0.79446 20.439 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91454 0.91799 NaN 1 1 Median 0.82109 0.68755 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54817000 27005000 27812000 0 0 0 0 0 0 50621000 24871000 25750000 4195600 2133600 2061900 0 0 0 0 0 0 21430 3861 22342 113014;113015 114178;114179 114178 2 LLQSIGQAPESISEK KAKKDAAAVGNHVAKLLQSIGQAPESISEK LLQSIGQAPESISEKELKLLCSNSAFLRVV K L L E K E 1 0 0 0 0 2 2 1 0 2 2 1 0 0 1 3 0 0 0 0 0 0 15 0 1598.8516 Q13564 Q13564 364 378 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes yes 2 5.196E-10 108.37 By MS/MS By matching By matching 1 3 3 0.98433 0.9622 13.687 7 Median 0.93126 0.86866 NaN 1 0 Median 1.3548 1.1223 15.078 3 0 Plateau 0.97867 0.9622 15.489 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48326000 22736000 25590000 24472000 12572000 11900000 10522000 4593800 5928100 13332000 5570500 7762000 0 0 0 0 0 0 0 0 0 21431 2825 22343 113016;113017;113018;113019;113020;113021;113022 114180;114181 114181 2 LLQSLLDTR EHKQRPKVELMPRMRLLQSLLDTRCVYILD LMPRMRLLQSLLDTRCVYILDCWSDVFIWL R L L T R C 0 1 0 1 0 1 0 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 9 0 1057.6132 Q13045 Q13045 765 773 FLII Protein flightless-1 homolog yes yes 2 0.0023677 72.485 By MS/MS By matching 1 1 1.0289 1.063 15.037 2 Median 1.2019 1.1823 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88084 0.95579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3756700 1898800 1858000 2335100 1186700 1148400 0 0 0 1421600 712110 709530 0 0 0 0 0 0 0 0 0 21432 2781 22344 113023;113024 114182;114183 114182 2 LLQSNPVLEAFGNAK ETCPAPERGGAVRDRLLQSNPVLEAFGNAK LLQSNPVLEAFGNAKTLRNDNSSRFGKYMD R L L A K T 2 0 2 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 15 0 1599.8621 F5H6E2;O00159;I3L501;I3L3Y6 F5H6E2 150 164 MYO1C Unconventional myosin-Ic yes no 2 0.010453 45.359 By MS/MS 1 0.27849 0.27098 NaN 1 Median 0.27849 0.27098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6212500 5174100 1038500 6212500 5174100 1038500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21433 1042 22345 113025 114184 114184 1 LLQSQLQVK ETSDSKTEGWSKNFKLLQSQLQVKKAALTQ WSKNFKLLQSQLQVKKAALTQAKSQRTKQS K L L V K K 0 0 0 0 0 3 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 1055.6339 Q96I25;Q5W010;Q5W011 Q96I25 25 33 RBM17 Splicing factor 45 yes no 2 0.00078953 97.798 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 1.0511 0.99123 15.294 6 Median 1.1213 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0309 0.99221 NaN 1 0 Median 1.0652 0.91525 NaN 1 0 Median 1.1016 1.1135 16.593 2 0 Median 0.97126 0.79994 NaN 1 0 Median 41733000 20004000 21729000 1440500 889800 550710 0 0 0 18390000 8469300 9920800 2149600 967360 1182200 15730000 7737200 7992500 4023600 1940500 2083100 21434 3674 22346 113026;113027;113028;113029;113030;113031 114185;114186;114187;114188 114188 4 LLQSQLQVKK ETSDSKTEGWSKNFKLLQSQLQVKKAALTQ SKNFKLLQSQLQVKKAALTQAKSQRTKQST K L L K K A 0 0 0 0 0 3 0 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 10 1 1183.7289 Q96I25;Q5W010;Q5W011 Q96I25 25 34 RBM17 Splicing factor 45 yes no 3 0.020098 35.541 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 872240 0 872240 0 0 0 0 0 0 0 0 0 0 0 0 872240 0 872240 0 0 0 21435 3674 22347 113032 114189 114189 1 LLQTAATAAQQGGQANHPTAAVVTEK EIARIVARCLWEESRLLQTAATAAQQGGQA GGQANHPTAAVVTEKQQMLEQHLQDVRKRV R L L E K Q 7 0 1 0 0 4 1 2 1 0 2 1 0 0 1 0 4 0 0 2 0 0 26 0 2575.3354 P40763;G8JLH9 P40763 115 140 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription yes no 3 9.9995E-20 70.533 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 2 0.98941 0.89459 25.193 9 Median 0.95513 0.8965 40.713 3 0 Median 1.0388 0.91073 NaN 1 0 Median 0.71794 0.7615 10.74 2 0 Median 0.98941 0.85704 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1591 0.97072 11.551 2 0 Median 86676000 42830000 43846000 50916000 24354000 26562000 3720500 1677100 2043500 24055000 12823000 11232000 5428100 2668600 2759400 0 0 0 2555900 1307000 1248900 21436 2289 22348 113033;113034;113035;113036;113037;113038;113039;113040;113041 114190;114191;114192;114193;114194;114195;114196;114197 114193 8 LLQTDDEEEAGLLELLK TWMNNFHTLLTLDNKLLQTDDEEEAGLLEL QTDDEEEAGLLELLKSQICDNAALYAQKYD K L L L K S 1 0 0 2 0 1 4 1 0 0 6 1 0 0 0 0 1 0 0 0 0 0 17 0 1927.999 P55060 P55060 252 268 CSE1L Exportin-2 yes yes 2 0.0047968 30.872 By MS/MS By MS/MS By matching 2 2 1 1.1448 1.026 26.236 5 Median 1.358 1.3187 35.494 2 0 Median 1.0617 0.93645 14.498 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1448 0.98752 NaN 1 0 Median 52848000 23803000 29045000 15733000 7110000 8622900 36964000 16618000 20346000 0 0 0 0 0 0 0 0 0 151660 75734 75929 21437 2493 22349 113042;113043;113044;113045;113046 114198;114199;114200 114200 3 LLQTLPQLR TSNRLHMVRLMLLERLLQTLPQLRNVGGVR LMLLERLLQTLPQLRNVGGVRAIPYMQVIL R L L L R N 0 1 0 0 0 2 0 0 0 0 4 0 0 0 1 0 1 0 0 0 0 0 9 0 1080.6655 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2981 2989 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00062125 109.01 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2553 1.1209 11.014 4 Median 1.0891 1.0612 NaN 1 0 Median 1.4784 1.1839 NaN 1 0 Median 0.87294 0.98081 NaN 1 0 Median 1.4469 1.2546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34378000 16930000 17448000 16324000 8783700 7540600 16437000 7266200 9171000 1446500 820560 625980 170010 59271 110740 0 0 0 0 0 0 21438 3089 22350 113047;113048;113049;113050 114201;114202;114203;114204;114205 114202 5 LLQTSNITK AVTGEFTGMPEQWARLLQTSNITKLEQKKN PEQWARLLQTSNITKLEQKKNPQAVLDVLK R L L T K L 0 0 1 0 0 1 0 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 9 0 1016.5866 Q13177;B1AKS5;Q13153;E9PM17;B3KNX7 Q13177 105 113 PAK2;PAK3;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase no no 2 0.00055412 114.89 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3014 1.0951 7.1021 5 Median 1.0569 0.98911 NaN 1 0 Median 1.3188 1.1166 4.1961 2 0 Median 1.0708 1.0951 NaN 1 0 Median 1.3898 1.1935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52519000 22994000 29525000 16611000 7648600 8962600 33880000 14423000 19457000 1555300 771560 783690 472870 150700 322180 0 0 0 0 0 0 21439 2794;2791 22351 113051;113052;113053;113054;113055 114206;114207;114208;114209;114210;114211 114209 6 LLQTTNNSPMNSKPQQIK VFREGRTKAVGTITKLLQTTNNSPMNSKPQ TTNNSPMNSKPQQIKMQSTKKGPLTKRDEG K L L I K M 0 0 3 0 0 3 0 0 0 1 2 2 1 0 2 2 2 0 0 0 0 0 18 1 2041.0626 O00178;B0QY59 O00178 573 590 GTPBP1 GTP-binding protein 1 yes no 3 9.2038E-05 41.412 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 0.8552 0.82699 15.97 5 Median 0.64142 0.66174 NaN 1 0 Median 0.90301 0.86038 5.5985 2 0 Median 0.64471 0.72427 NaN 1 0 Median 1.0082 0.98487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15103000 8726200 6376900 3998600 2464500 1534100 3304800 1798100 1506700 5908200 3689000 2219100 1891500 774550 1117000 0 0 0 0 0 0 21440 1446 22352 113056;113057;113058;113059;113060 114212;114213;114214;114215;114216;114217 114215 6 LLQVASPFLEPHLVR IALYNWLIQVDLADKLLQVASPFLEPHLVR LLQVASPFLEPHLVRMAKVDQNRVRYMDLL K L L V R M 1 1 0 0 0 1 1 0 1 0 4 0 0 1 2 1 0 0 0 2 0 0 15 0 1717.9879 O75694;E9PF10 O75694 1052 1066 NUP155 Nuclear pore complex protein Nup155 yes no 3 0.026397 18.138 By matching By MS/MS By matching By matching 1 1 1 1 0.98565 0.89885 10.643 4 Median NaN NaN NaN 0 0 Median 0.93767 0.80238 NaN 1 0 Median 0.80618 0.88616 NaN 1 0 Median 1.0361 0.91173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2818 1.0388 NaN 1 0 Median 6817900 3415700 3402200 0 0 0 2194300 1106300 1088000 3652600 1881100 1771500 220390 105940 114450 0 0 0 750690 322470 428230 21441 1692 22353 113061;113062;113063;113064 114218 114218 1 LLQVSVDDRLK LKMSRQLDDLNMRWKLLQVSVDDRLKQLQE MRWKLLQVSVDDRLKQLQEAHRDFGPSSQH K L L L K Q 0 1 0 2 0 1 0 0 0 0 3 1 0 0 0 1 0 0 0 2 0 0 11 1 1284.7402 P46939;Q5T097 P46939 2783 2793 UTRN Utrophin yes no 3 0.00072297 54.471 By MS/MS 1 0.8649 0.89248 NaN 1 Median 0.8649 0.89248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6305900 3623500 2682400 6305900 3623500 2682400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21442 2349 22354 113065 114219 114219 1 LLQVVEEPQALAAFLR VWSEKGQVEVFALRRLLQVVEEPQALAAFL LQVVEEPQALAAFLRDEQAQMKPIFSFAGH R L L L R D 3 1 0 0 0 2 2 0 0 0 4 0 0 1 1 0 0 0 0 2 0 0 16 0 1796.0196 Q9BQ67;M0QX71 Q9BQ67 183 198 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 2.9781E-10 112.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1 0.97077 0.9032 29.335 10 Median NaN NaN NaN 0 0 Median 0.88525 0.76852 1.0038 2 0 Median 0.97077 0.95088 11.044 4 0 Median 0.97178 0.84513 3.5698 2 0 Median 1.0624 1.0646 NaN 1 0 Median 2.6185 2.0626 NaN 1 0 Median 68321000 34125000 34196000 0 0 0 21959000 11233000 10726000 40117000 19934000 20183000 1774500 862860 911650 4352000 2065800 2286100 118450 29401 89045 21443 3784 22355 113066;113067;113068;113069;113070;113071;113072;113073;113074;113075 114220;114221;114222;114223;114224;114225;114226;114227;114228 114223 9 LLQYLYSLK IIGTEEAYDIINREKLLQYLYSLKQPDGSF IINREKLLQYLYSLKQPDGSFLMHVGGEVD K L L L K Q 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 1 0 0 2 0 0 0 9 0 1139.659 B4DL54;P49356 B4DL54 211 219 CHURC1-FNTB;FNTB Protein farnesyltransferase subunit beta yes no 2 0.007492 51.335 By MS/MS By matching By MS/MS 3 1 1 0.99455 0.88332 29.457 5 Median 0.93517 0.88332 41.38 3 0 Median 1.0055 0.85683 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99455 0.89417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29469000 13617000 15852000 4238300 2079800 2158500 13909000 6817700 7091400 0 0 0 11322000 4719400 6602300 0 0 0 0 0 0 21444 597 22356 113076;113077;113078;113079;113080 114229;114230;114231;114232 114232 4 LLQYSDALEHLLTTGQGVVLER DGNSYRLQSWLYSSRLLQYSDALEHLLTTG LEHLLTTGQGVVLERSIFSDFVFLEAMYNQ R L L E R S 1 1 0 1 0 2 2 2 1 0 6 0 0 0 0 1 2 0 1 2 0 0 22 0 2454.3118 A0A087WXC5;E7ESZ7;O95299;Q8N1B9;C9J6X0 A0A087WXC5 140 161 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 3 1.5178E-09 57.009 By MS/MS 1 1.451 1.2138 NaN 1 Median NaN NaN NaN 0 0 Median 1.451 1.2138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3314200 1314000 2000200 0 0 0 3314200 1314000 2000200 0 0 0 0 0 0 0 0 0 0 0 0 21445 66 22357 113081 114233;114234 114233 2 LLRDYQELMNTK DLEDALQQAKEDLARLLRDYQELMNTKLAL LARLLRDYQELMNTKLALDLEIATYRTLLE R L L T K L 0 1 1 1 0 1 1 0 0 0 3 1 1 0 0 0 1 0 1 0 0 0 12 1 1522.7814 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 461 472 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 2.286E-93 234.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 23 6 10 13 17 2 0.10097 0.10353 148.51 59 Median 0.089145 0.089606 147.55 20 20 Median 0.30998 0.27368 80.065 5 5 Median 0.059979 0.069638 210 9 9 Median 0.094195 0.089478 155.95 10 10 Median 0.1008 0.10353 103.78 13 13 Median 0.83788 0.7042 207.74 2 2 Median 1852600000 1674100000 178480000 800940000 742090000 58854000 37291000 30246000 7045200 292560000 259360000 33198000 56648000 48750000 7897600 645690000 580480000 65208000 19453000 13172000 6280600 + 21446 1848;735 22358;22359 113082;113083;113084;113085;113086;113087;113088;113089;113090;113091;113092;113093;113094;113095;113096;113097;113098;113099;113100;113101;113102;113103;113104;113105;113106;113107;113108;113109;113110;113111;113112;113113;113114;113115;113116;113117;113118;113119;113120;113121;113122;113123;113124;113125;113126;113127;113128;113129;113130;113131;113132;113133;113134;113135;113136;113137;113138;113139;113140;113141;113142;113143;113144;113145;113146;113147;113148;113149;113150;113151;113152 114235;114236;114237;114238;114239;114240;114241;114242;114243;114244;114245;114246;114247;114248;114249;114250;114251;114252;114253;114254;114255;114256;114257;114258;114259;114260;114261;114262;114263;114264;114265;114266;114267;114268;114269;114270;114271;114272;114273;114274;114275;114276;114277;114278;114279;114280;114281;114282;114283;114284;114285;114286;114287;114288;114289;114290;114291;114292;114293;114294;114295;114296;114297;114298;114299;114300;114301;114302;114303;114304;114305;114306 114245 257 72 LLRDYQELMNVK DLEEALQQAKEDLARLLRDYQELMNVKLAL LARLLRDYQELMNVKLALDVEIATYRKLLE R L L V K L 0 1 1 1 0 1 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 12 1 1520.8021 CON__P35908;H0YID6;CON__P35908v2;P35908;CON__Q5XKE5;Q5XKE5 CON__P35908 465 476 KRT79;KRT2 Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 2;3 2.2747E-14 143.89 By MS/MS By MS/MS By MS/MS By MS/MS 7 5 1 9 0.098122 0.096811 104.63 18 Median 0.088071 0.088683 125.22 6 6 Median NaN NaN NaN 0 0 Median 0.14439 0.15853 104.44 4 4 Median 0.10671 0.094456 NaN 1 1 Median 0.073597 0.083677 103.7 7 7 Median NaN NaN NaN 0 0 Median 247320000 231650000 15668000 68257000 63486000 4771700 0 0 0 53674000 49494000 4179700 1713000 1633000 79993 123680000 117040000 6637000 0 0 0 + 21447 764;765;786 22360;22361 113153;113154;113155;113156;113157;113158;113159;113160;113161;113162;113163;113164;113165;113166;113167;113168;113169;113170;113171;113172;113173;113174 114307;114308;114309;114310;114311;114312;114313;114314;114315;114316;114317;114318;114319;114320;114321;114322;114323;114324;114325;114326;114327;114328 114307 285 22 LLREEKDELGEQVLGLK FKLMSERIKANQIHKLLREEKDELGEQVLG REEKDELGEQVLGLKSQVDAQLLTVQKLEE K L L L K S 0 1 0 1 0 1 4 2 0 0 5 2 0 0 0 0 0 0 0 1 0 0 17 2 1968.0892 O75150;H3BP71;A0A087WTK2 O75150 802 818 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 4 9.5535E-06 52.522 By MS/MS 1 0.95415 1.0872 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95415 1.0872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3778000 1960200 1817800 0 0 0 0 0 0 3778000 1960200 1817800 0 0 0 0 0 0 0 0 0 21448 1648 22362 113175 114329 114329 1 LLREELQLLQEQGSYVGEVVR RRLQAQRNELNAKVRLLREELQLLQEQGSY QLLQEQGSYVGEVVRAMDKKKVLVKVHPEG R L L V R A 0 2 0 0 0 3 4 2 0 0 5 0 0 0 0 1 0 0 1 3 0 0 21 1 2457.3227 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QSE0 P62195 58 78 PSMC5 26S protease regulatory subunit 8 yes no 3 8.634E-24 120.75 By matching By MS/MS 1 2 1.2053 1.1221 7.6262 3 Plateau 1.1111 1.1221 NaN 1 0 Median 1.2053 1.1061 10.722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21484000 9989300 11495000 304870 135180 169700 21179000 9854100 11325000 0 0 0 0 0 0 0 0 0 0 0 0 21449 2572 22363 113176;113177;113178 114330;114331;114332;114333;114334 114333 5 LLSAGQLLFQGR ______________________________ LRRLLSAGQLLFQGRALLVTNTLGCGALMA R L L G R A 1 1 0 0 0 2 0 2 0 0 4 0 0 1 0 1 0 0 0 0 0 0 12 0 1301.7456 Q567V2 Q567V2 12 23 MPV17L2 Mpv17-like protein 2 yes yes 2 0.00063335 92.062 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2455 1.099 15.162 4 Median 1.2577 1.26 NaN 1 1 Median 1.1364 0.95375 NaN 1 0 Median 1.3309 1.2426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2335 0.97189 NaN 1 0 Median 3943200 1777000 2166200 2932900 1351500 1581400 411930 194780 217150 465240 184750 280500 0 0 0 0 0 0 133190 46006 87184 21450 3036 22364 113179;113180;113181;113182 114335;114336 114335 2 LLSALEDLEVLSR GGGLGVAGGNSTRERLLSALEDLEVLSREL ERLLSALEDLEVLSRELIEMLAISRNQKLL R L L S R E 1 1 0 1 0 0 2 0 0 0 5 0 0 0 0 2 0 0 0 1 0 0 13 0 1456.8137 Q9NPJ6 Q9NPJ6 30 42 MED4 Mediator of RNA polymerase II transcription subunit 4 yes yes 2 0.0014995 52.79 By matching By MS/MS 1 1 1.1135 1.0226 0.99775 2 Median NaN NaN NaN 0 0 Median 1.1892 1.0154 NaN 1 0 Median 1.0426 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4028000 1871900 2156100 0 0 0 693860 311920 381930 3334100 1560000 1774100 0 0 0 0 0 0 0 0 0 21451 4056 22365 113183;113184 114337 114337 1 LLSAMLVSEGDLTEQK GMKNNQSKSANSTLRLLSAMLVSEGDLTEQ LSAMLVSEGDLTEQKRISKSDMSRLRLAAG R L L Q K R 1 0 0 1 0 1 2 1 0 0 4 1 1 0 0 2 1 0 0 1 0 0 16 0 1732.8917 Q29RF7 Q29RF7 863 878 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.00017057 62.408 By MS/MS 1 3.5334 3.776 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.5334 3.776 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10418000 2375500 8042500 0 0 0 0 0 0 10418000 2375500 8042500 0 0 0 0 0 0 0 0 0 21452 3003 22366 113185 114338 114338 1 LLSAMLVSEGDLTEQKR GMKNNQSKSANSTLRLLSAMLVSEGDLTEQ SAMLVSEGDLTEQKRISKSDMSRLRLAAGS R L L K R I 1 1 0 1 0 1 2 1 0 0 4 1 1 0 0 2 1 0 0 1 0 0 17 1 1888.9928 Q29RF7 Q29RF7 863 879 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 3.1592E-11 105.31 By matching By matching By MS/MS By matching By matching By matching 1 1 3 1 1 1 0.87183 0.99116 33.519 8 Median 0.64919 0.67162 NaN 1 0 Median 1.1614 1.1161 NaN 1 0 Median 0.80986 0.92276 44.554 3 1 Median 1.3437 1.2913 NaN 1 0 Median 0.7774 0.86065 NaN 1 0 Median 1.2777 1.1274 NaN 1 0 Median 42370000 23539000 18831000 1340700 726930 613820 589740 272280 317460 37197000 20641000 16555000 581680 260500 321190 2305900 1496500 809300 354760 140850 213910 21453 3003 22367 113186;113187;113188;113189;113190;113191;113192;113193 114339;114340;114341 114340 3 LLSASPVDAAIR HTPVTSLAWAPSGGRLLSASPVDAAIRVWD GGRLLSASPVDAAIRVWDVSTETCVPLPWF R L L I R V 3 1 0 1 0 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 12 0 1211.6874 Q9NRG9;F8VZ44;H3BU82;F8VUB6 Q9NRG9 259 270 AAAS Aladin yes no 2 3.3934E-06 123.63 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 4 2 1 0.99579 0.9178 17.564 12 Median 0.9067 0.88455 NaN 1 0 Median 1.0254 0.88722 NaN 1 0 Median 0.95593 0.96249 7.6284 3 0 Median 1.1302 0.96032 7.1748 4 0 Median 0.61327 0.63538 24.968 2 1 Median 1.1131 0.9578 NaN 1 0 Median 77534000 38403000 39131000 5829000 2658600 3170400 1862700 757390 1105300 49920000 25079000 24841000 11202000 5178000 6024400 6789600 3866500 2923100 1930500 864040 1066500 21454 4082 22368 113194;113195;113196;113197;113198;113199;113200;113201;113202;113203;113204;113205 114342;114343;114344;114345;114346 114343 5 LLSDATVEKDESHAGK KSGPLFNFDVHDDVRLLSDATVEKDESHAG LSDATVEKDESHAGKVVLRSWYEKNKHIFP R L L G K V 2 0 0 2 0 0 2 1 1 0 2 2 0 0 0 2 1 0 0 1 0 0 16 1 1698.8424 Q14320 Q14320 290 305 FAM50A Protein FAM50A yes yes 3;4 4.128E-05 62.377 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 2 1 1.037 0.94923 29.251 12 Median 0.90441 0.84623 12.058 2 0 Median 0.98146 0.88905 10.108 2 0 Median 1.0245 1.1164 15.74 3 0 Median 1.121 0.99824 9.3119 2 0 Median 1.7511 1.8438 14.803 2 0 Median 0.99744 0.85174 NaN 1 0 Median 36192000 17184000 19008000 5502600 2837000 2665600 4749200 2212700 2536500 14055000 6705300 7349600 7748600 3746000 4002600 3462800 1421500 2041300 673890 261820 412080 21455 2873 22369 113206;113207;113208;113209;113210;113211;113212;113213;113214;113215;113216;113217 114347;114348;114349;114350;114351;114352;114353;114354;114355;114356;114357;114358 114355 12 LLSDDYEQVR RGLKLHQTIYNQACKLLSDDYEQVRSAAVQ NQACKLLSDDYEQVRSAAVQLIWVVSQLYP K L L V R S 0 1 0 2 0 1 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1236.5986 Q96HW7 Q96HW7 240 249 INTS4 Integrator complex subunit 4 yes yes 2 0.00036244 87.308 By matching By MS/MS 1 1 0.76422 0.77852 67.771 2 Median NaN NaN NaN 0 0 Median 0.4955 0.48211 NaN 1 0 Median 1.1787 1.2572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6898400 3247200 3651100 0 0 0 1361400 900180 461260 5536900 2347100 3189900 0 0 0 0 0 0 0 0 0 21456 3671 22370 113218;113219 114359;114360 114360 2 LLSDFLDSEVSELR SKEVEETATAKNVLKLLSDFLDSEVSELRT KLLSDFLDSEVSELRTGAAEGLAKLMFSGL K L L L R T 0 1 0 2 0 0 2 0 0 0 4 0 0 1 0 3 0 0 0 1 0 0 14 0 1621.8199 Q9BPX3 Q9BPX3 695 708 NCAPG Condensin complex subunit 3 yes yes 2 0.00041385 70.977 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.0163 0.91144 23.422 8 Median 0.76978 0.74232 44.838 2 0 Median 1.0028 0.87437 5.5445 2 0 Median 0.88478 0.94485 18.478 2 0 Median NaN NaN NaN 0 0 Median 1.0944 1.1628 NaN 1 0 Median 1.0785 0.91355 NaN 1 0 Median 10454000 4909600 5544400 3555300 1596400 1958900 4305300 2055800 2249500 1630800 847320 783480 0 0 0 804550 337610 466940 158070 72491 85576 21457 3778 22371 113220;113221;113222;113223;113224;113225;113226;113227 114361;114362;114363;114364;114365;114366;114367 114362 7 LLSDPNYGVHLPAVK EGRLVHIIGALRTSKLLSDPNYGVHLPAVK LLSDPNYGVHLPAVKLRRHVEMYQWVETEE K L L V K L 1 0 1 1 0 0 0 1 1 0 3 1 0 0 2 1 0 0 1 2 0 0 15 0 1621.8828 Q9BTV4 Q9BTV4 100 114 TMEM43 Transmembrane protein 43 yes yes 3 0.060449 18.364 By MS/MS 1 4.7281 4.3538 NaN 1 Median 4.7281 4.3538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31603000 3819500 27783000 31603000 3819500 27783000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21458 3830 22372 113228 114368 114368 1 LLSDSLPPSTGTFQEAQSR DVDNALRAVGDASKRLLSDSLPPSTGTFQE SLPPSTGTFQEAQSRLNEAAAGLNQAATEL R L L S R L 1 1 0 1 0 2 1 1 0 0 3 0 0 1 2 4 2 0 0 0 0 0 19 0 2033.0065 Q9Y490 Q9Y490 1223 1241 TLN1 Talin-1 yes yes 2 8.0323E-10 94.122 By MS/MS By matching By matching By matching 1 2 1 1 0.90209 0.78907 26.821 5 Median 1.2001 1.1265 NaN 1 0 Median 0.80381 0.69382 8.0919 2 0 Median 1.0842 1.1986 NaN 1 0 Median 0.90209 0.78907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19153000 8277800 10876000 12956000 5492900 7463000 1894200 886330 1007900 4057700 1777300 2280400 245600 121310 124290 0 0 0 0 0 0 21459 4441 22373 113229;113230;113231;113232;113233 114369;114370;114371 114370 3 LLSDTVASDPGVLQEQLATTK SLQAWMQACEANVEKLLSDTVASDPGVLQE ASDPGVLQEQLATTKQLQEELAEHQVPVEK K L L T K Q 2 0 0 2 0 2 1 1 0 0 4 1 0 0 1 2 3 0 0 2 0 0 21 0 2185.1478 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4020 4040 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 4.2948E-29 114.55 By MS/MS By matching By MS/MS 2 1 2 0.85166 0.86247 12.353 5 Median 0.85569 0.858 0.73418 2 1 Median 1.17 1.0311 NaN 1 0 Median 0.74307 0.80143 13.555 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42699000 21475000 21224000 32516000 15698000 16818000 829940 365130 464820 9353100 5411600 3941500 0 0 0 0 0 0 0 0 0 21460 1220 22374 113234;113235;113236;113237;113238 114372;114373;114374;114375;114376 114374 4 LLSEEVFDFSSGQITQVK RTSESLCQNNMVILKLLSEEVFDFSSGQIT EEVFDFSSGQITQVKSKHLKDSMCNEFSQI K L L V K S 0 0 0 1 0 2 2 1 0 1 2 1 0 2 0 3 1 0 0 2 0 0 18 0 2026.0259 O14980 O14980 173 190 XPO1 Exportin-1 yes yes 2;3 2.4729E-11 84.365 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.1811 1.033 31.662 7 Median 1.0478 1.0288 3.5772 2 0 Median 1.1811 1.0197 0.88109 3 1 Median NaN NaN NaN 0 0 Median 1.303 1.1476 NaN 1 0 Median 2.3317 2.3939 NaN 1 0 Median NaN NaN NaN 0 0 Median 14563000 6695400 7867800 9525400 4594500 4930900 3647000 1714300 1932800 0 0 0 109710 47847 61861 1281100 338820 942270 0 0 0 21461 1510 22375 113239;113240;113241;113242;113243;113244;113245 114377;114378;114379;114380;114381 114381 5 LLSEGADVNAK SLKNTKISSSEWPLRLLSEGADVNAKHRLG WPLRLLSEGADVNAKHRLGWTALMVAAINR R L L A K H 2 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1115.5823 H0YGM0;Q9H078;A0A2U3TZY2;A0A2R8Y6R5 H0YGM0 158 168 CLPB Caseinolytic peptidase B protein homolog no no 2 0.00018859 100.02 By MS/MS By MS/MS By MS/MS 1 2 1 1.176 1.0497 135.59 4 Median 1.1108 1.056 NaN 1 0 Median 0.33518 0.2832 184.42 2 1 Median 1.3345 1.3607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25405000 13846000 11559000 7169000 3754600 3414400 14767000 8750400 6017000 3468200 1340700 2127500 0 0 0 0 0 0 0 0 0 21462 1181 22376 113246;113247;113248;113249 114382;114383;114384;114385;114386;114387 114386 6 LLSELDQQSTEMPR DVESCHDMAALNILKLLSELDQQSTEMPRT KLLSELDQQSTEMPRTGNGPMSVCGRC___ K L L P R T 0 1 0 1 0 2 2 0 0 0 3 0 1 0 1 2 1 0 0 0 0 0 14 0 1645.7981 O95793;A0A087X1A5;Q5JW30 O95793 552 565 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 2.4566E-07 160.36 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1 0.9306 0.81224 32.903 7 Median 0.54743 0.53401 50.786 2 0 Median 0.96764 0.84216 NaN 1 0 Median 0.98597 1.0005 NaN 1 0 Median 0.94248 0.81224 NaN 1 0 Median 0.9306 0.93386 NaN 1 0 Median 0.78782 0.6756 NaN 1 0 Median 36342000 17944000 18398000 16785000 8655900 8128900 1328500 549270 779230 7778200 3604500 4173600 1570400 848630 721760 7549500 3554700 3994800 1330800 730920 599870 21463 1794 22377 113250;113251;113252;113253;113254;113255;113256 114388;114389;114390;114391;114392 114389 5 LLSESAQPLK SKRRRPQPYPYPSKKLLSESAQPLKKVEEE YPSKKLLSESAQPLKKVEEEQEADEEDVSE K L L L K K 1 0 0 0 0 1 1 0 0 0 3 1 0 0 1 2 0 0 0 0 0 0 10 0 1084.6128 Q9H3N1 Q9H3N1 224 233 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 2 0.00040727 76.827 By MS/MS By matching By matching 1 3 2 0.7925 0.80575 19.241 6 Median 0.87835 0.80673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71372 0.77231 5.6572 3 0 Median 1.3271 1.0848 16.072 2 0 Median 44071000 24401000 19670000 13648000 7312100 6336000 0 0 0 0 0 0 0 0 0 26647000 15676000 10971000 3776100 1413400 2362700 21464 3956 22378 113257;113258;113259;113260;113261;113262 114393 114393 1 LLSESAQPLKK SKRRRPQPYPYPSKKLLSESAQPLKKVEEE PSKKLLSESAQPLKKVEEEQEADEEDVSEE K L L K K V 1 0 0 0 0 1 1 0 0 0 3 2 0 0 1 2 0 0 0 0 0 0 11 1 1212.7078 Q9H3N1 Q9H3N1 224 234 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 2;3 0.0021706 47.603 By MS/MS By MS/MS 2 2 0.93092 0.90672 9.912 4 Median 0.93092 0.90672 2.5588 2 0 Median 0.9957 0.90453 16.975 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19683000 9681100 10002000 15638000 7615200 8022800 4044900 2065900 1978900 0 0 0 0 0 0 0 0 0 0 0 0 21465 3956 22379 113263;113264;113265;113266 114394;114395;114396;114397 114394 4 LLSESNER MNEEHNKRLSDTVDKLLSESNERLQLHLKE LSDTVDKLLSESNERLQLHLKERMAALEDK K L L E R L 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 946.47197 A0A2R8Y7R9;Q13136;H0YD72;H0YEF9;E9PJZ7;R4GN36;M0QZB5;B1APN9;O75335;O75145 A0A2R8Y7R9 436 443 PPFIA1;PPFIA3;PPFIA4 Liprin-alpha-1;Liprin-alpha-4;Liprin-alpha-3 yes no 2 0.015483 50.127 By MS/MS 1 1.0987 0.94056 NaN 1 Median NaN NaN NaN 0 0 Median 1.0987 0.94056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2157600 1043800 1113800 0 0 0 2157600 1043800 1113800 0 0 0 0 0 0 0 0 0 0 0 0 21466 382 22380 113267 114398 114398 1 LLSETVMPR YEAGVYTEKVLEATKLLSETVMPRFAEQVE VLEATKLLSETVMPRFAEQVEVAIEALSAN K L L P R F 0 1 0 0 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 1 0 0 9 0 1044.5638 P26232;A0A0A0MTJ6;A0A0A0MRI5 P26232 576 584 CTNNA2 Catenin alpha-2 yes no 2 0.035824 34.808 By MS/MS 1 1.0174 0.98629 NaN 1 Median 1.0174 0.98629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26669000 13152000 13517000 26669000 13152000 13517000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21467 2141 22381 113268 114399 114399 1 LLSEVKK VLSGGSTLFKGFGDRLLSEVKKLAPKDVKI LFKGFGDRLLSEVKKLAPKDVKIRISAPQE R L L K K L 0 0 0 0 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 7 1 815.51165 P42025;P61163 P61163 314 320 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2 0.025238 64.803 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.2107 1.1328 12.603 5 Median 1.2107 1.1328 NaN 1 0 Median 1.3163 1.1926 NaN 1 0 Median 0.97675 1.1098 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3647 1.4273 NaN 1 0 Median 1.1389 1.0163 NaN 1 0 Median 3274600 1378900 1895800 561600 259290 302310 2241000 909710 1331300 116560 63570 52985 0 0 0 242560 94148 148410 112860 52126 60735 21468 2547;2304 22382 113269;113270;113271;113272;113273 114400 114400 1 LLSFMAPIDHTTMNDDAR KASKGRKLRFHVLSKLLSFMAPIDHTTMND FMAPIDHTTMNDDARTELYRSLFGQLHPPD K L L A R T 2 1 1 3 0 0 0 0 1 1 2 0 2 1 1 1 2 0 0 0 0 0 18 0 2046.9503 Q9NY61 Q9NY61 523 540 AATF Protein AATF yes yes 3 1.7547E-06 60.317 By MS/MS 1 0.89504 0.92501 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89504 0.92501 NaN 1 0 Median NaN NaN NaN 0 0 Median 6845700 3784800 3061000 0 0 0 0 0 0 0 0 0 0 0 0 6845700 3784800 3061000 0 0 0 21469 4172 22383 113274 114401;114402 114401 2 LLSGGSVLDIIK YTSFVVKDELWLVMKLLSGGSVLDIIKHIV VMKLLSGGSVLDIIKHIVAKGEHKSGVLDE K L L I K H 0 0 0 1 0 0 0 2 0 2 3 1 0 0 0 2 0 0 0 1 0 0 12 0 1213.7282 O95747;C9JIG9 O95747 94 105 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.029201 28.727 By MS/MS By MS/MS 1 2 1.1607 0.96024 29.4 3 Median NaN NaN NaN 0 0 Median 1.2106 1.0307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90666 0.75909 33.243 2 0 Median 10755000 4528800 6226300 0 0 0 4815600 1962200 2853400 0 0 0 0 0 0 0 0 0 5939500 2566600 3372900 21470 1789 22384 113275;113276;113277 114403;114404 114404 2 LLSGLQEKPDQK GASGSLDKYEDCLIRLLSGLQEKPDQKDGI LIRLLSGLQEKPDQKDGIFTKVVLEAPLIT R L L Q K D 0 0 0 1 0 2 1 1 0 0 3 2 0 0 1 1 0 0 0 0 0 0 12 1 1354.7456 Q92797;A0A087WUE9 Q92797 649 660 SYMPK Symplekin yes no 2;3 1.5826E-06 101.39 By matching By MS/MS By MS/MS By matching 2 3 2 1 0.7607 0.84512 27.986 8 Median NaN NaN NaN 0 0 Median 0.89345 0.83581 23.475 2 0 Median 0.70778 0.81736 4.7634 3 0 Median 0.9399 0.89532 2.5009 2 0 Median NaN NaN NaN 0 0 Median 0.45375 0.40491 NaN 1 0 Median 24864000 13450000 11413000 0 0 0 4074900 2044200 2030700 13458000 7578200 5879400 6688500 3359200 3329300 0 0 0 642700 468860 173840 21471 3558 22385 113278;113279;113280;113281;113282;113283;113284;113285 114405;114406;114407;114408;114409;114410 114409 6 LLSGLQEKPDQKDGIFTK GASGSLDKYEDCLIRLLSGLQEKPDQKDGI GLQEKPDQKDGIFTKVVLEAPLITESALEV R L L T K V 0 0 0 2 0 2 1 2 0 1 3 3 0 1 1 1 1 0 0 0 0 0 18 2 2016.0892 Q92797;A0A087WUE9 Q92797 649 666 SYMPK Symplekin yes no 4 0.018111 19.036 By MS/MS 1 0.87925 1.0565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87925 1.0565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5944400 3507500 2436900 0 0 0 0 0 0 5944400 3507500 2436900 0 0 0 0 0 0 0 0 0 21472 3558 22386 113286 114411 114411 1 LLSGSLDR HKTVTCLCLSSSGQRLLSGSLDRKVKVYST LSSSGQRLLSGSLDRKVKVYSTTSYKVVHS R L L D R K 0 1 0 1 0 0 0 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 8 0 859.47633 Q8TED0;H0Y8P4 Q8TED0 263 270 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.012861 54.157 By MS/MS 1 1.5696 1.5759 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5696 1.5759 NaN 1 0 Median NaN NaN NaN 0 0 Median 3855800 1528500 2327300 0 0 0 0 0 0 0 0 0 0 0 0 3855800 1528500 2327300 0 0 0 21473 1163 22387 113287 114412 114412 1 LLSHGVPLPNWLINSYK YKVQNNLYHHCVINKLLSHGVPLPNWLINS SHGVPLPNWLINSYKKVDAAELLRLYLNYD K L L Y K K 0 0 2 0 0 0 0 1 1 1 4 1 0 0 2 2 0 1 1 1 0 0 17 0 1950.0727 Q12769;G3V198 Q12769 1314 1330 NUP160 Nuclear pore complex protein Nup160 yes no 3 0.0237 16.123 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.88187 0.85527 14.143 4 Median NaN NaN NaN 0 0 Median 0.9784 0.85657 NaN 1 0 Median 0.78942 0.85398 NaN 1 0 Median 1.0748 0.90875 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79486 0.66158 NaN 1 0 Median 9045000 4583900 4461100 0 0 0 2468400 1025900 1442500 5464000 2966300 2497600 550670 293080 257590 0 0 0 561930 298600 263330 21474 2756 22388 113288;113289;113290;113291 114413;114414;114415 114414 3 LLSISGKR EEDAESEDEEEEDVKLLSISGKRSAPGGGS EEEEDVKLLSISGKRSAPGGGSKVPQKKVK K L L K R S 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 1 872.54435 P06748;E5RI98 P06748 135 142 NPM1 Nucleophosmin yes no 2 0.0033875 127.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 3 1 1.3315 1.2663 6.5202 16 Median 1.3722 1.3677 2.4037 3 0 Plateau 1.3726 1.2258 1.481 3 0 Plateau 1.2393 1.3253 5.1587 2 0 Median 1.4525 1.2673 9.7006 4 0 Median 1.1439 1.2412 2.1044 3 0 Median 1.5571 1.4093 NaN 1 0 Median 49299000 21589000 27710000 6375800 2677500 3698300 5199200 2277700 2921500 9772200 4197100 5575200 18635000 8091200 10544000 7922600 3780000 4142600 1394200 565520 828720 21475 1877 22389 113292;113293;113294;113295;113296;113297;113298;113299;113300;113301;113302;113303;113304;113305;113306;113307 114416;114417;114418;114419;114420;114421;114422;114423;114424;114425;114426;114427;114428;114429;114430;114431;114432 114422 17 LLSITVR ILQSTRLPLISGFYKLLSITVRNAKKIKYF PLISGFYKLLSITVRNAKKIKYFEGVSPKS K L L V R N 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 P78527 P78527 669 675 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.3999E-05 153.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 3 1.309 1.2068 39.982 14 Median 1.1611 1.122 3.7739 2 0 Median 1.6525 1.3548 7.8815 2 0 Median 1.0785 1.1547 13.097 2 0 Median 1.5414 1.3433 7.7365 3 0 Median 0.92614 0.9765 5.3947 2 0 Median 1.4876 1.2372 82.432 3 0 Plateau 145160000 68076000 77079000 37015000 17389000 19626000 24911000 9822800 15089000 64613000 32838000 31775000 7947600 2950800 4996800 6987300 3465200 3522000 3681200 1609900 2071300 21476 2647 22390 113308;113309;113310;113311;113312;113313;113314;113315;113316;113317;113318;113319;113320;113321 114433;114434;114435;114436;114437;114438;114439;114440;114441;114442;114443;114444;114445;114446;114447 114437 15 LLSLEMANKK QNVPGIEKVDDVVKRLLSLEMANKKEMLKI DVVKRLLSLEMANKKEMLKIKQEQFMKKIV R L L K K E 1 0 1 0 0 0 1 0 0 0 3 2 1 0 0 1 0 0 0 0 0 0 10 1 1145.6478 P82914 P82914 92 101 MRPS15 28S ribosomal protein S15, mitochondrial yes yes 2 0.0045442 57.59 By MS/MS By matching 1 1 0.97838 0.94538 14.075 2 Median 1.026 1.0443 NaN 1 0 Median 0.93298 0.85582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5262900 2427700 2835200 4385500 1896000 2489600 877410 531770 345640 0 0 0 0 0 0 0 0 0 0 0 0 21477 2656 22391 113322;113323 114448 114448 1 LLSLISIALPENK PVIRRSSLLTEKLLRLLSLISIALPENKVS LRLLSLISIALPENKVSEAQANSGSGASST R L L N K V 1 0 1 0 0 0 1 0 0 2 4 1 0 0 1 2 0 0 0 0 0 0 13 0 1409.8494 Q7Z6Z7;H0Y659 Q7Z6Z7 3456 3468 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 2.6909E-05 93.111 By MS/MS By MS/MS 3 3 0.86249 0.85851 13.789 5 Median 0.84464 0.85851 9.4184 3 0 Median 1.0784 0.95745 16.498 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16473000 8152500 8320700 10542000 5485800 5056000 5931600 2666800 3264800 0 0 0 0 0 0 0 0 0 0 0 0 21478 3253 22392 113324;113325;113326;113327;113328;113329 114449;114450;114451;114452;114453 114450 5 LLSLLEKDEFK KAKGKLVDCKVSAQKLLSLLEKDEFKSGAH SAQKLLSLLEKDEFKSGAHVDFYDK_____ K L L F K S 0 0 0 1 0 0 2 0 0 0 4 2 0 1 0 1 0 0 0 0 0 0 11 1 1333.7493 P35270 P35270 241 251 SPR Sepiapterin reductase yes yes 2;3 4.5556E-05 84.658 By MS/MS By matching 2 1 1.0155 1.0321 12.488 3 Median 0.93723 0.95302 11.275 2 1 Median 1.2256 1.1256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20542000 10922000 9620000 19989000 10658000 9331000 552860 263890 288970 0 0 0 0 0 0 0 0 0 0 0 0 21479 2241 22393 113330;113331;113332 114454;114455;114456 114454 3 LLSMAKPVYHAITK ELHIQGFNISHTQTRLLSMAKPVYHAITKH RLLSMAKPVYHAITKHSPKKPVIVFVPSRK R L L T K H 2 0 0 0 0 0 0 0 1 1 2 2 1 0 1 1 1 0 1 1 0 0 14 1 1570.8905 O75643 O75643 1539 1552 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 6.4193E-08 110.38 By MS/MS By MS/MS By matching By MS/MS By matching 3 3 1 2 1 0.9069 0.96008 19.992 10 Median 0.86107 0.87641 6.3914 3 0 Median NaN NaN NaN 0 0 Median 0.82813 0.96102 4.5337 3 0 Median 1.2111 1.1304 NaN 1 0 Median 1.2042 1.3258 30.685 2 0 Median 0.9442 0.84257 NaN 1 0 Median 129390000 68188000 61197000 29881000 16344000 13537000 0 0 0 79920000 42355000 37565000 897960 428700 469260 18319000 8901700 9417100 366820 158860 207960 21480 1688 22394 113333;113334;113335;113336;113337;113338;113339;113340;113341;113342 114457;114458;114459;114460;114461 114460 4 LLSMAYSAVGK NGLTKLINEYKEDPKLLSMAYSAVGKLSSR EDPKLLSMAYSAVGKLSSRMPHLFTKDIAL K L L G K L 2 0 0 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 1 1 0 0 11 0 1138.6056 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 415 425 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.00014501 84.213 By MS/MS By MS/MS By matching 1 1 1 1.0141 0.97474 26.269 3 Median 1.0141 0.97474 NaN 1 0 Median 1.1559 1.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6806 0.63535 NaN 1 0 Median 31515000 15395000 16120000 24019000 11957000 12063000 7286900 3359600 3927400 0 0 0 0 0 0 0 0 0 208450 78435 130020 21481 3116 22395 113343;113344;113345 114462;114463;114464;114465 114463 4 LLSMGQLDLLR MPHIEAQQRAVAINRLLSMGQLDLLRSNTG AINRLLSMGQLDLLRSNTGLLYRIKDSQNA R L L L R S 0 1 0 1 0 1 0 1 0 0 5 0 1 0 0 1 0 0 0 0 0 0 11 0 1257.7115 Q9H1D9 Q9H1D9 57 67 POLR3F DNA-directed RNA polymerase III subunit RPC6 yes yes 2 0.0002101 99.653 By matching By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 1.2434 1.1155 30.422 7 Median 0.95926 0.93007 NaN 1 0 Median 1.378 1.1674 13.99 2 0 Median 1.1524 1.1155 NaN 1 0 Median 1.5285 1.2885 NaN 1 0 Median 1.2434 1.2643 NaN 1 0 Median 0.6522 0.54914 NaN 1 0 Median 12731000 5515100 7216300 1971500 1027900 943570 8278000 3282200 4995800 560070 257070 303000 166770 76446 90328 180320 93788 86528 1574700 777620 797080 21482 3934 22396 113346;113347;113348;113349;113350;113351;113352 114466 114466 1 LLSMLDDVPK L L P K 0 0 0 2 0 0 0 0 0 0 3 1 1 0 1 1 0 0 0 1 0 0 10 0 1129.6053 REV__Q14602 yes yes 2 0.015761 45.081 By matching By matching By matching By MS/MS By matching By matching 2 1 5 7 2 6 0.93186 0.84443 16.548 23 Median 1.144 1.1234 0.86163 2 0 Median 1.01 0.90671 NaN 1 0 Median 0.93839 1.004 6.9961 5 0 Median 0.83935 0.73291 8.6337 7 0 Median 0.72519 0.72683 1.9813 2 0 Median 0.97223 0.81231 10.885 6 0 Median 1622500000 846140000 776370000 103520000 51779000 51745000 102390000 53118000 49274000 576940000 294890000 282050000 586680000 310640000 276040000 160700000 93119000 67583000 92277000 42594000 49683000 + 21483 4539 22397 113353;113354;113355;113356;113357;113358;113359;113360;113361;113362;113363;113364;113365;113366;113367;113368;113369;113370;113371;113372;113373;113374;113375 114467 114467 2006 1 LLSNDEVTIK YDELVLMMQRVFRGKLLSNDEVTIKYKDED VFRGKLLSNDEVTIKYKDEDGDLITIFDSS K L L I K Y 0 0 1 1 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1130.6183 Q92734;C9JTY3;C9JUE0;C9JJP5 Q92734 48 57 TFG Protein TFG yes no 2 0.00060699 73.985 By MS/MS By MS/MS 3 5 1.1121 0.93201 23.936 8 Median 0.87883 0.81211 20.618 3 2 Median 1.1686 0.9818 27.103 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77757000 37817000 39940000 53919000 27530000 26389000 23838000 10287000 13551000 0 0 0 0 0 0 0 0 0 0 0 0 21484 3551 22398 113376;113377;113378;113379;113380;113381;113382;113383 114468;114469;114470;114471;114472;114473 114470 6 LLSNSSSLWR QGPHLRHTGQIGGLKLLSNSSSLWRSSGAP IGGLKLLSNSSSLWRSSGAPETLQRVSGIS K L L W R S 0 1 1 0 0 0 0 0 0 0 3 0 0 0 0 4 0 1 0 0 0 0 10 0 1161.6142 Q9BW92 Q9BW92 256 265 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 2 0.0076122 47.574 By matching By matching By MS/MS 1 1 2 1.1754 1.1924 30.986 4 Median 1.1511 1.1257 NaN 1 0 Median 2.1752 1.9141 NaN 1 0 Median 0.97631 1.0766 22.594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9782700 4341300 5441400 2777600 1179800 1597700 1440500 456880 983640 5564600 2704600 2860000 0 0 0 0 0 0 0 0 0 21485 3867 22399 113384;113385;113386;113387 114474 114474 1 LLSNTVMPR YEPGVYTEKVLEATKLLSNTVMPRFTEQVE VLEATKLLSNTVMPRFTEQVEAAVEALSSD K L L P R F 0 1 1 0 0 0 0 0 0 0 2 0 1 0 1 1 1 0 0 1 0 0 9 0 1029.5641 P35221;G3XAM7 P35221 578 586 CTNNA1 Catenin alpha-1 yes no 2 0.0011692 84.498 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 0.89435 0.81332 35.449 6 Median 0.4204 0.40609 NaN 1 1 Median 1.0847 0.9399 NaN 1 0 Median 0.76483 0.81256 NaN 1 0 Median 0.95678 0.81408 NaN 1 0 Median 1.1243 1.1683 NaN 1 0 Median 0.83599 0.7587 NaN 1 0 Median 30657000 17868000 12789000 6715000 4823400 1891600 3751900 1926900 1825000 9233200 5684000 3549200 2740800 1301800 1439000 5801300 2499100 3302300 2414500 1633000 781520 21486 2232 22400 113388;113389;113390;113391;113392;113393 114475;114476;114477;114478;114479;114480 114480 6 LLSPSHVVQFR WVSDQGLLLLIDLIRLLSPSHVVQFRSDHS DLIRLLSPSHVVQFRSDHSKYMPDLTPQYV R L L F R S 0 1 0 0 0 1 0 0 1 0 2 0 0 1 1 2 0 0 0 2 0 0 11 0 1281.7194 Q5SY16 Q5SY16 425 435 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 5.0187E-05 77.192 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 0.9858 1.0043 21.245 7 Median NaN NaN NaN 0 0 Median 1.2065 1.0437 38.614 2 0 Median 0.94127 0.9907 1.9332 2 0 Median 1.6694 1.4208 NaN 1 0 Median 0.8758 0.91461 NaN 1 0 Median 1.3633 1.133 NaN 1 0 Median 24494000 11876000 12618000 0 0 0 3921600 1759800 2161900 14677000 7332700 7343800 493570 197920 295650 5084400 2415800 2668600 317670 170110 147560 21487 3077 22401 113394;113395;113396;113397;113398;113399;113400 114481;114482;114483;114484;114485;114486 114482 6 LLSPTER NDIGVSSLDCREAFRLLSPTERLYAYHLSR LDCREAFRLLSPTERLYAYHLSRAAWYGGL R L L E R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 7 0 814.45487 G3V1D3;G3V180;Q9NY33;E9PPK9;E9PKK8;E9PQF2 G3V1D3 44 50 DPP3 Dipeptidyl peptidase 3 yes no 2 0.017772 64.757 By MS/MS By MS/MS 1 2 1.3298 1.1617 52.503 3 Plateau 0.82982 0.8079 NaN 1 0 Median 0.76192 0.69246 73.176 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10795000 5568800 5226600 3130800 1925700 1205100 7664600 3643100 4021500 0 0 0 0 0 0 0 0 0 0 0 0 21488 1102 22402 113401;113402;113403 114487;114488 114488 2 LLSPVVPQISAPQSNK DLAKNADKVLELMNKLLSPVVPQISAPQSN LSPVVPQISAPQSNKERLKNMALSIAERYR K L L N K E 1 0 1 0 0 2 0 0 0 1 2 1 0 0 3 3 0 0 0 2 0 0 16 0 1676.9461 Q8N1F7;H3BVG0;H3BVE2;H3BRD9 Q8N1F7 645 660 NUP93 Nuclear pore complex protein Nup93 yes no 2 2.6642E-08 140.14 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 1 2 0.67125 0.68577 11.589 8 Median 0.69607 0.67374 NaN 1 0 Median 0.78299 0.70698 NaN 1 0 Median 0.58936 0.69017 10.114 3 0 Plateau 0.88349 0.76565 NaN 1 0 Median 0.71512 0.73341 15.522 2 0 Median NaN NaN NaN 0 0 Median 49274000 29196000 20077000 3162200 2008600 1153700 672750 346650 326100 38893000 23377000 15516000 4016700 2048800 1967900 2528600 1415000 1113600 0 0 0 21489 3356 22403 113404;113405;113406;113407;113408;113409;113410;113411 114489;114490;114491;114492;114493;114494;114495 114494 7 LLSPYSPQTQETDSAVQK EGDITQKGYEKKRSKLLSPYSPQTQETDSA PYSPQTQETDSAVQKELRNQTPAPSAAQTS K L L Q K E 1 0 0 1 0 3 1 0 0 0 2 1 0 0 2 3 2 0 1 1 0 0 18 0 1990.9848 Q9P265 Q9P265 48 65 DIP2B Disco-interacting protein 2 homolog B yes yes 2 0.0002122 43.991 By MS/MS By matching 1 1 0.93267 0.89456 12.642 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75304 0.81806 NaN 1 0 Median 1.1552 0.9782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3527800 1694500 1833400 0 0 0 0 0 0 3014900 1432400 1582500 512940 262090 250850 0 0 0 0 0 0 21490 4215 22404 113412;113413 114496 114496 1 LLSQGVIAFR LDLTGKNLHPDVTGRLLSQGVIAFRCPRSF DVTGRLLSQGVIAFRCPRSFMDQPLAEHFS R L L F R C 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1102.6499 A0A0A0MTL5;Q13309;D6R9R7 A0A0A0MTL5 166 175 SKP2 S-phase kinase-associated protein 2 yes no 2 0.00037242 81.296 By matching By MS/MS By matching 1 2 2 1.2762 1.1117 19.651 5 Median 1.2345 1.2249 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3058 1.3532 32.974 2 0 Median 1.2779 1.0941 2.2566 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14658000 7302200 7356300 1459000 719140 739810 0 0 0 8967400 4593600 4373800 4232100 1989500 2242700 0 0 0 0 0 0 21491 195 22405 113414;113415;113416;113417;113418 114497;114498 114498 2 LLSQTMKDHLVR KNAGLAFIELVNEGRLLSQTMKDHLVRVAN EGRLLSQTMKDHLVRVANEAEFILSRQRAE R L L V R V 0 1 0 1 0 1 0 0 1 0 3 1 1 0 0 1 1 0 0 1 0 0 12 1 1439.7919 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1883 1894 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 1.6379E-09 105.46 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21492 470 22406 113419 114499 114499 1 LLSQVVRPQESR SDAYNSGDDKNEKHRLLSQVVRPQESRSLS KHRLLSQVVRPQESRSLSPSHLTEDRQGRW R L L S R S 0 2 0 0 0 2 1 0 0 0 2 0 0 0 1 2 0 0 0 2 0 0 12 1 1410.7943 Q5T200 Q5T200 863 874 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2;3 0.00012324 80.245 By MS/MS By MS/MS 2 3 0.82394 0.92626 12.236 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73064 0.92297 11.781 2 0 Median 0.94614 0.92626 14.727 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31811000 17645000 14166000 0 0 0 0 0 0 24763000 14189000 10574000 7047800 3456100 3591700 0 0 0 0 0 0 21493 3082 22407 113420;113421;113422;113423;113424 114500;114501;114502;114503;114504;114505;114506 114501 7 LLSRPQDALEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDALEGVVLS DALEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 2 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 2 0 0 21 1 2249.2379 H0Y2W2;Q9NVI7 H0Y2W2 293 313 ATAD3A ATPase family AAA domain-containing protein 3A no no 3 3.5635E-12 75.358 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 1 2 1 1 1 0.95538 0.88515 20.001 7 Median 0.66278 0.65299 NaN 1 0 Median 0.97462 0.88515 NaN 1 0 Median 0.84627 0.92908 8.1779 2 0 Median 1.1548 1.076 NaN 1 0 Median 1.1377 1.2257 NaN 1 0 Median 0.95538 0.84466 NaN 1 0 Median 77342000 40974000 36368000 32261000 18834000 13427000 20774000 10198000 10576000 15663000 7408100 8254600 657650 279560 378100 6136300 3337000 2799300 1850300 916650 933640 21494 1140;4133 22408 113425;113426;113427;113428;113429;113430;113431 114507;114508;114509;114510;114511;114512 114508 6 LLSRPQDVLEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDVLEGVVLS DVLEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 1 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 3 0 0 21 1 2277.2692 Q5T9A4 Q5T9A4 307 327 ATAD3B ATPase family AAA domain-containing protein 3B no no 3 0.0011785 41.257 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.78299 0.72028 44.777 4 Median NaN NaN NaN 0 0 Median 0.76871 0.69815 NaN 1 1 Median 1.1852 1.3226 NaN 1 0 Median 0.79753 0.74311 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5022 0.444 NaN 1 0 Median 5633000 2686400 2946600 0 0 0 2211400 1233300 978080 2815200 1151400 1663800 97466 40995 56471 0 0 0 508920 260630 248290 21495 3098 22409 113432;113433;113434;113435 114513;114514 114514 2 LLSSDRNPPIDDLIK DNPVVQLSAVQAARKLLSSDRNPPIDDLIK LLSSDRNPPIDDLIKSGILPILVKCLERDD K L L I K S 0 1 1 3 0 0 0 0 0 2 3 1 0 0 2 2 0 0 0 0 0 0 15 1 1694.9203 O00629;O00505 O00505 98 112 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 3 0.001105 37.013 By MS/MS By matching 1 1 0.78079 0.80185 9.944 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76541 0.86026 NaN 1 0 Median 0.79648 0.74741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18097000 9618000 8478600 0 0 0 0 0 0 17354000 9216700 8137000 742910 401310 341600 0 0 0 0 0 0 21496 1469;1475 22410 113436;113437 114515 114515 1 LLSSEDIEGMR MSESEQALKGTSQIKLLSSEDIEGMRLVCR SQIKLLSSEDIEGMRLVCRLAREVLDVAAG K L L M R L 0 1 0 1 0 0 2 1 0 1 2 0 1 0 0 2 0 0 0 0 0 0 11 0 1248.602 P53582 P53582 130 140 METAP1 Methionine aminopeptidase 1 yes yes 2 1.6789E-05 131.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 3 2 1 1 1.3416 1.2337 62.458 9 Median 1.3416 1.3346 NaN 1 0 Median 1.22 1.0634 NaN 1 1 Median 1.2691 1.3986 57.764 3 1 Median 1.4193 1.1836 5.8672 2 0 Median 1.0317 1.06 NaN 1 0 Median 6.9783 6.2163 NaN 1 0 Median 211630000 88906000 122730000 9027700 3601100 5426700 17878000 9147800 8730100 140700000 60922000 79780000 33954000 12207000 21748000 6829300 2435300 4394000 3240000 593690 2646300 21497 2468 22411;22412 113438;113439;113440;113441;113442;113443;113444;113445;113446 114516;114517;114518;114519;114520;114521;114522;114523;114524;114525 114521 1159 10 LLSSEDR DKRSALSCVISKTARLLSSEDRARLPEELR CVISKTARLLSSEDRARLPEELRSLVQKRY R L L D R A 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 7 0 818.4134 Q9UIG0 Q9UIG0 505 511 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.022813 57.463 By matching By MS/MS 1 2 1.17 0.97784 10.061 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93515 0.97784 NaN 1 0 Median 1.2734 1.0648 12.41 2 0 Median 2531900 1225100 1306800 0 0 0 0 0 0 0 0 0 0 0 0 1738900 892780 846150 793000 332350 460650 21498 4290 22413 113447;113448;113449 114526 114526 1 LLSSFDFFLTDAR QTLKKEYKSYEAKLRLLSSFDFFLTDARIR LRLLSSFDFFLTDARIRRLLPSLIGRHFYQ R L L A R I 1 1 0 2 0 0 0 0 0 0 3 0 0 3 0 2 1 0 0 0 0 0 13 0 1530.7718 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 148 160 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0011611 73.067 By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 1.1955 1.1788 22.112 6 Median NaN NaN NaN 0 0 Median 2.2295 1.9231 NaN 1 1 Median 0.99746 1.0443 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1563 1.1972 4.8028 3 0 Median 1.2361 1.0898 NaN 1 0 Median 13079000 5533600 7545800 0 0 0 2363200 706230 1657000 822270 381900 440370 0 0 0 9644600 4331300 5313300 249370 114160 135210 21499 1716 22414 113450;113451;113452;113453;113454;113455;113456 114527;114528;114529;114530;114531;114532 114532 6 LLSSLGGFK RTWHVRRQAQQTVRKLLSSLGGFKLAHGLL QQTVRKLLSSLGGFKLAHGLLEELKTVLSS K L L F K L 0 0 0 0 0 0 0 2 0 0 3 1 0 1 0 2 0 0 0 0 0 0 9 0 920.53312 Q92616 Q92616 591 599 GCN1L1 Translational activator GCN1 yes yes 2 0.0040235 61.962 By MS/MS By MS/MS 1 1 1.3047 1.1957 7.7004 2 Median 1.1756 1.1323 NaN 1 0 Median 1.448 1.2626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7921000 3621500 4299500 3677000 1652900 2024100 4244000 1968600 2275400 0 0 0 0 0 0 0 0 0 0 0 0 21500 3544 22415 113457;113458 114533;114534;114535;114536 114534 4 LLSSLLLTMSNNNPELFSPPQK HVRDMAAAGLHSNVRLLSSLLLTMSNNNPE TMSNNNPELFSPPQKYQLLVYHADSLFHDK R L L Q K Y 0 0 3 0 0 1 1 0 0 0 6 1 1 1 3 4 1 0 0 0 0 0 22 0 2442.2828 Q9UJX3 Q9UJX3 55 76 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 3 0.025787 13.455 By MS/MS 1 0.62039 0.62735 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62039 0.62735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1034400 619740 414680 0 0 0 0 0 0 1034400 619740 414680 0 0 0 0 0 0 0 0 0 21501 4301 22416 113459 114537;114538 114537 2 LLSSYLQK AELLRFPERSTEIGKLLSSYLQKKSDVEDH RSTEIGKLLSSYLQKKSDVEDHSVHLLFSA K L L Q K K 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 2 0 0 1 0 0 0 8 0 950.54368 P23919;H7BZ20;H7C312;G5E9E9;H7C3A4 P23919 52 59 DTYMK Thymidylate kinase yes no 2 0.0027345 105.39 By MS/MS By MS/MS 1 1 1.1177 0.98278 2.1047 2 Median 1.0482 0.96826 NaN 1 0 Median 1.1917 0.99751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59508000 28467000 31041000 49427000 23774000 25654000 10081000 4693500 5387700 0 0 0 0 0 0 0 0 0 0 0 0 21502 2120 22417 113460;113461 114539;114540;114541;114542 114542 4 LLSTDPVAAK SDNPDLRDRGYIYWRLLSTDPVAAKEVVLA YIYWRLLSTDPVAAKEVVLAEKPLISEETD R L L A K E 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 10 0 1013.5757 Q10567;C9J1E7 Q10567 529 538 AP1B1 AP-1 complex subunit beta-1 yes no 2 0.0013144 66.621 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1.032 0.93793 9.8482 6 Median 0.93883 0.91861 NaN 1 0 Median 1.0604 0.89882 14.778 3 0 Median 0.91697 1.0126 NaN 1 0 Median 1.1415 0.95765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32065000 14843000 17223000 4483400 2175300 2308200 21718000 9902000 11816000 4635400 2201500 2433800 1228500 563800 664750 0 0 0 0 0 0 21503 2752 22418 113462;113463;113464;113465;113466;113467 114543;114544;114545;114546;114547;114548 114544 6 LLSTDPVTAK SDNPDLRDRGYIYWRLLSTDPVTAKEVVLS YIYWRLLSTDPVTAKEVVLSEKPLISEETD R L L A K E 1 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 1 0 0 10 0 1043.5863 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 491 500 AP2B1 AP-2 complex subunit beta yes no 2 0.0020391 65.305 By MS/MS By MS/MS By matching 2 1 1 1.4987 1.3534 29.803 3 Median NaN NaN NaN 0 0 Median 1.5549 1.3582 NaN 1 1 Median 0.73357 0.80914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4987 1.3534 NaN 1 0 Median 13894000 6108600 7785600 0 0 0 7028000 2789600 4238400 5130800 2746800 2383900 0 0 0 0 0 0 1735400 572160 1163200 21504 128 22419 113468;113469;113470;113471 114549;114550;114551;114552 114549 4 LLSTFPR FDFVASKGFPWDEYKLLSTFPRRDVTQLDP GFPWDEYKLLSTFPRRDVTQLDPNKSLLEV K L L P R R 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 7 0 832.48069 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 615 621 FAF1 FAS-associated factor 1 yes no 2 0.014908 73.039 By MS/MS By matching 1 2 1.0961 1.0443 23.871 3 Median 1.0961 1.0443 NaN 1 0 Median 1.0605 0.93897 32.623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8846600 4225900 4620600 6019300 2881000 3138400 2827200 1345000 1482300 0 0 0 0 0 0 0 0 0 0 0 0 21505 575 22420 113472;113473;113474 114553;114554 114554 2 LLSTGPTEPWSIR ______________________________ HKLLSTGPTEPWSIREKLCLASSVMRSGDQ K L L I R E 0 1 0 0 0 0 1 1 0 1 2 0 0 0 2 2 2 1 0 0 0 0 13 0 1455.7722 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;F8WDX5;D6RID0;F8WCS7;F8WBH2;C9JV05 H7C128 4 16 BRD8 Bromodomain-containing protein 8 yes no 2 5.5866E-05 87.298 By MS/MS By MS/MS 1 1 0.70721 0.68451 3.574 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60693 0.66743 NaN 1 0 Median 0.82406 0.70203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10862000 6200300 4661800 0 0 0 0 0 0 9233900 5448100 3785800 1628200 752170 876060 0 0 0 0 0 0 21506 620 22421 113475;113476 114555;114556 114555 2 LLSTSPALQGTPASR LLAANVATLGLLMARLLSTSPALQGTPASR LLSTSPALQGTPASRGFFAAAILFLSQSHV R L L S R G 2 1 0 0 0 1 0 1 0 0 3 0 0 0 2 3 2 0 0 0 0 0 15 0 1497.8151 Q9UBB6 Q9UBB6 579 593 NCDN Neurochondrin yes yes 2 0.0003337 53.569 By MS/MS 1 0.81398 0.705 NaN 1 Median NaN NaN NaN 0 0 Median 0.81398 0.705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733200 2689500 2043800 0 0 0 4733200 2689500 2043800 0 0 0 0 0 0 0 0 0 0 0 0 21507 4234 22422 113477 114557 114557 1 LLSTSPMPTVSSYPPLAISLK QAPLSQSDITILTPKLLSTSPMPTVSSYPP MPTVSSYPPLAISLKKPSAAPEAGASALPN K L L L K K 1 0 0 0 0 0 0 0 0 1 4 1 1 0 4 5 2 0 1 1 0 0 21 0 2201.2017 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 700 720 no no 2 0.0012078 28.632 By MS/MS By matching 2 1 0.50519 0.56119 3.4059 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.504 0.55216 2.292 2 0 Median 0.58212 0.52425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2186400 1375500 810940 0 0 0 0 0 0 2014700 1256900 757790 171750 118600 53148 0 0 0 0 0 0 21508 388 22423 113478;113479;113480 114558 114558 1 LLSTVAQAVK VLYSKSEVAAENHLRLLSTVAQAVKGQGTI ENHLRLLSTVAQAVKGQGTICWVDCGDAES R L L V K G 2 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1028.623 Q14554 Q14554 66 75 PDIA5 Protein disulfide-isomerase A5 yes yes 2 0.00037046 81.548 By matching By matching By MS/MS By MS/MS By matching 1 2 2 4 2 1.3303 1.1409 15.417 11 Median 1.0273 0.98434 NaN 1 0 Median 1.4532 1.2398 10.145 2 0 Median 1.0345 1.0276 8.128 2 0 Median 1.3721 1.1623 14.947 4 0 Median NaN NaN NaN 0 0 Median 1.2349 1.0264 28.497 2 0 Median 30121000 13262000 16860000 4740300 2111900 2628400 1938400 830730 1107700 14173000 6583200 7589900 8184900 3327300 4857500 0 0 0 1084800 408460 676380 21509 2880 22424 113481;113482;113483;113484;113485;113486;113487;113488;113489;113490;113491 114559;114560;114561 114561 3 LLSTYLER VITTKESSATDEAWRLLSTYLERYKVQNNL ATDEAWRLLSTYLERYKVQNNLYHHCVINK R L L E R Y 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 1 0 1 0 0 0 8 0 993.5495 Q12769;G3V198 Q12769 1291 1298 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.0022672 139.31 By matching By MS/MS By MS/MS By matching 2 3 2 1 1.2365 1.2372 18.069 8 Median 1.1822 1.1852 12.576 2 0 Median NaN NaN NaN 0 0 Median 1.1157 1.2262 19.483 3 0 Median 1.4762 1.2754 7.7777 2 0 Median NaN NaN NaN 0 0 Median 2.0104 1.6642 NaN 1 0 Median 54868000 25171000 29697000 6830600 3310700 3519900 0 0 0 41125000 18996000 22129000 6533000 2722200 3810800 0 0 0 379380 141550 237830 21510 2756 22425 113492;113493;113494;113495;113496;113497;113498;113499 114562;114563;114564;114565;114566;114567 114564 6 LLSVEGSTLR NAQVTTENQLKYLTRLLSVEGSTLREALTH KYLTRLLSVEGSTLREALTHRKIIAKGEEL R L L L R E 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 10 0 1073.6081 F5H6E2;O00159 F5H6E2 317 326 MYO1C Unconventional myosin-Ic yes no 2 0.0013065 66.692 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0956 1.0285 15.47 4 Median 1.1078 1.0695 NaN 1 0 Median 1.0835 0.91455 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5381 1.3109 NaN 1 0 Median 0.93613 0.98906 NaN 1 0 Median NaN NaN NaN 0 0 Median 17042000 8535700 8506700 7328200 3611200 3717000 5037900 2499100 2538800 0 0 0 1248300 462100 786210 3428000 1963200 1464800 0 0 0 21511 1042 22426 113500;113501;113502;113503 114568;114569 114569 2 LLSVFMSR NERSALNEVHLVVMRLLSVFMSRTKSGSKS VHLVVMRLLSVFMSRTKSGSKSSICESSSL R L L S R T 0 1 0 0 0 0 0 0 0 0 2 0 1 1 0 2 0 0 0 1 0 0 8 0 951.52117 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 3058 3065 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 4.9831E-09 137.18 By MS/MS 2 1.5292 1.5031 NaN 1 Median 1.5292 1.5031 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9509000 3640400 5868600 9509000 3640400 5868600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21512 3089 22427 113504;113505 114570;114571 114570 2 LLSVNIR DKEALIAKCNDYRRRLLSVNIRVRADLRDN KCNDYRRRLLSVNIRVRADLRDNYSPGWKF R L L I R V 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 P07814 P07814 1334 1340 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.0018517 111.69 By MS/MS By MS/MS 1 1 1.2749 1.1392 7.4307 2 Median 1.2794 1.2007 NaN 1 0 Median 1.2705 1.0809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33134000 14347000 18786000 18527000 8002400 10524000 14607000 6344800 8262100 0 0 0 0 0 0 0 0 0 0 0 0 21513 1892 22428 113506;113507 114572;114573;114574;114575 114573 4 LLSVVPVPEGYSVK SKDVREAPVPSLHLKLLSVVPVPEGYSVKC KLLSVVPVPEGYSVKCEYSAHKEGVLKEEI K L L V K C 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 2 0 0 1 4 0 0 14 0 1485.8443 Q9GZN8 Q9GZN8 92 105 C20orf27 UPF0687 protein C20orf27 yes yes 2 1.7644E-05 86.313 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.95182 0.8343 14.005 9 Median 0.88103 0.82771 16.783 4 0 Median 1.0027 0.85598 3.6278 2 0 Median 0.78589 0.7566 23.286 2 1 Median 0.99102 0.82056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83004000 44544000 38460000 60834000 32925000 27909000 5974200 2950100 3024100 13955000 7575100 6380200 2240200 1093800 1146400 0 0 0 0 0 0 21514 3909 22429 113508;113509;113510;113511;113512;113513;113514;113515;113516 114576;114577;114578;114579;114580;114581;114582;114583;114584 114577 9 LLSYIQR RFENLGVSSLGERKKLLSYIQRLVQIHVDT SSLGERKKLLSYIQRLVQIHVDTMKVINDP K L L Q R L 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 7 0 891.5178 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9;A0A2R8Y586;A0A2R8YG48;A0A2R8Y7R5;A0A2R8Y755 Q9Y3Z3 100 106 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.0072812 89.903 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3721 1.2711 13.576 4 Median 1.1216 1.0663 NaN 1 0 Median 1.3738 1.1888 NaN 1 0 Median 1.3704 1.4428 NaN 1 0 Median 1.6212 1.3591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24298000 11553000 12745000 11521000 5994700 5525900 7836700 3425100 4411600 4162000 1838700 2323400 779080 294700 484370 0 0 0 0 0 0 21515 4436 22430 113517;113518;113519;113520 114585;114586;114587 114585 3 LLTATNLVTLPNSR LIAGQKSARLDLLYRLLTATNLVTLPNSRG RLLTATNLVTLPNSRGEHLLLFLVQTVARQ R L L S R G 1 1 2 0 0 0 0 0 0 0 4 0 0 0 1 1 3 0 0 1 0 0 14 0 1511.8671 O95071;E7EMW7 O95071 1258 1271 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 7.4957E-08 100.72 By MS/MS By matching By matching By matching 2 2 1 1 0.83034 0.81808 9.134 6 Median 0.77481 0.76303 3.4851 2 0 Median 0.93302 0.78771 11.716 2 0 Median 0.77478 0.87406 NaN 1 0 Median 1.0439 0.90505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17362000 9117000 8245100 10187000 5671100 4515700 5834200 2705800 3128400 1224500 685210 539250 116580 54876 61700 0 0 0 0 0 0 21516 1744 22431 113521;113522;113523;113524;113525;113526 114588 114588 1 LLTDDGNKWLYK SFVNGFVNAAFGQDKLLTDDGNKWLYKNKD QDKLLTDDGNKWLYKNKDHGMLSAAASLGM K L L Y K N 0 0 1 2 0 0 0 1 0 0 3 2 0 0 0 0 1 1 1 0 0 0 12 1 1464.7613 Q13200 Q13200 390 401 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 0.00041223 54.776 By MS/MS By matching By matching 1 1 1 1.277 1.4593 37.394 3 Median 1.1894 1.2464 NaN 1 0 Median 2.6275 2.5402 NaN 1 0 Median 1.277 1.4593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12673000 5523400 7149200 10372000 4718800 5652900 1295800 345580 950250 1005100 459040 546090 0 0 0 0 0 0 0 0 0 21517 2796 22432 113527;113528;113529 114589;114590 114590 2 LLTDILGIEDYNGDMDFK VTKTDPEKGEIEDYRLLTDILGIEDYNGDM DILGIEDYNGDMDFKIAGTNKGITALQADI R L L F K I 0 0 1 4 0 0 1 2 0 2 3 1 1 1 0 0 1 0 1 0 0 0 18 0 2070.982 Q8TCS8 Q8TCS8 529 546 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 4.8053E-13 124.12 By matching By MS/MS 1 1 1.1807 1.1215 20.732 2 Median 0.95084 0.96855 NaN 1 0 Median 1.4661 1.2985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2480700 1009400 1471300 595390 268140 327260 1885300 741240 1144100 0 0 0 0 0 0 0 0 0 0 0 0 21518 3467 22433 113530;113531 114591 114591 1 LLTEEEYR CRKVCKGAEKPVPPRLLTEEEYRIQGEVET EKPVPPRLLTEEEYRIQGEVETRKALEELR R L L Y R I 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1051.5186 O14524 O14524 341 348 TMEM194A Transmembrane protein 194A yes yes 2 0.00012179 108.09 By MS/MS 2 1.6818 1.3822 17.896 2 Median NaN NaN NaN 0 0 Median 1.6818 1.3822 17.896 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23772000 9093400 14678000 0 0 0 23772000 9093400 14678000 0 0 0 0 0 0 0 0 0 0 0 0 21519 1482 22434 113532;113533 114592;114593 114592 2 LLTEIHGGAGGPSGR RLLLENYEEYAARARLLTEIHGGAGGPSGR LLTEIHGGAGGPSGRAEAGRALASGTEASS R L L G R A 1 1 0 0 0 0 1 5 1 1 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1420.7423 Q16763;K7EPJ1 Q16763 150 164 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2;3 1.6761E-09 113.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 1 1 1.0789 1.0648 46.157 10 Median 1.2395 1.1738 NaN 1 0 Median 0.89982 0.81167 30.7 2 0 Median 1.2616 1.2117 6.4345 3 0 Median 0.73575 0.61125 9.6094 2 0 Median 2.5966 2.5933 NaN 1 0 Median 0.79256 0.63865 NaN 1 0 Median 70599000 32472000 38127000 8148300 3846200 4302100 5296000 2936900 2359100 33036000 13717000 19319000 14343000 7882200 6460300 5838800 1699800 4139100 3937900 2390400 1547400 21520 2997 22435 113534;113535;113536;113537;113538;113539;113540;113541;113542;113543 114594;114595;114596;114597;114598;114599;114600;114601;114602;114603;114604;114605;114606;114607;114608 114598 15 LLTEKDAQIAMMQQR SNRDELELELAENRKLLTEKDAQIAMMQQR LLTEKDAQIAMMQQRIDRLALLNEKQAASP K L L Q R I 2 1 0 1 0 3 1 0 0 1 2 1 2 0 0 0 1 0 0 0 0 0 15 1 1774.907 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 243 257 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 3.7594E-13 175.15 By MS/MS By MS/MS By MS/MS 2 5 3 0.95395 1.1379 7.9059 10 Median 1.1379 1.1452 1.2547 2 1 Median NaN NaN NaN 0 0 Median 0.95509 1.1449 6.6634 5 0 Median NaN NaN NaN 0 0 Median 0.92824 1.0604 5.4388 3 0 Plateau NaN NaN NaN 0 0 Median 251750000 125010000 126740000 10149000 4162800 5985800 0 0 0 165410000 82372000 83037000 0 0 0 76196000 38477000 37720000 0 0 0 21521 2905;77 22436;22437;22438 113544;113545;113546;113547;113548;113549;113550;113551;113552;113553 114609;114610;114611;114612;114613;114614;114615;114616;114617;114618;114619;114620;114621;114622;114623 114613 32;33 15 LLTEQLSQR KSRTLELSEALRHERLLTEQLSQRTQEACV ALRHERLLTEQLSQRTQEACVHQDTQAHHA R L L Q R T 0 1 0 0 0 2 1 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 9 0 1086.6033 O95613 O95613 2766 2774 PCNT Pericentrin yes yes 2 0.014224 58.981 By MS/MS 1 1.337 1.1157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.337 1.1157 NaN 1 1 Median 1378900 818320 560570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1378900 818320 560570 21522 1782 22439 113554 114624 114624 1 LLTESLK QAFKIVPYNTETLDKLLTESLKNNIPASGL YNTETLDKLLTESLKNNIPASGLHLFGINQ K L L L K N 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 7 0 802.48002 Q6ZUJ8 Q6ZUJ8 300 306 PIK3AP1 Phosphoinositide 3-kinase adapter protein 1 yes yes 2 0.037371 46.37 By MS/MS 1 1.1192 0.97074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1192 0.97074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2371000 1037600 1333500 0 0 0 0 0 0 0 0 0 2371000 1037600 1333500 0 0 0 0 0 0 21523 3201 22440 113555 114625 114625 1 LLTFMGMAVENK DSLGLLHEQNMAKMRLLTFMGMAVENKEIS KMRLLTFMGMAVENKEISFDTMQQELQIGA R L L N K E 1 0 1 0 0 0 1 1 0 0 2 1 2 1 0 0 1 0 0 1 0 0 12 0 1352.6832 Q7L2H7;H0YCQ8 Q7L2H7 279 290 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 3.9693E-06 105.98 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.137 1.0588 28.524 8 Median 1.1221 1.0393 1.5606 2 1 Median 1.2518 1.0669 33.733 3 0 Plateau 1.1377 1.0899 NaN 1 0 Median 1.364 1.1453 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7704 1.4609 NaN 1 0 Median 44480000 21674000 22806000 25844000 12912000 12933000 13026000 6378000 6648000 4780400 2052100 2728300 426840 196660 230180 0 0 0 402350 135390 266970 21524 3221 22441;22442;22443 113556;113557;113558;113559;113560;113561;113562;113563;113564 114626;114627;114628;114629;114630;114631;114632 114627 1689;1690 7 LLTGELLPTDGMIR ALVGPNGAGKSTLLKLLTGELLPTDGMIRK KLLTGELLPTDGMIRKHSHVKIGRYHQHLQ K L L I R K 0 1 0 1 0 0 1 2 0 1 4 0 1 0 1 0 2 0 0 0 0 0 14 0 1527.8331 Q9UG63 Q9UG63 442 455 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 6.4373E-07 120.09 By MS/MS By MS/MS By MS/MS 2 2 1 0.91518 0.764 28.38 5 Median NaN NaN NaN 0 0 Median 0.79238 0.69406 10.768 2 0 Median 1.1381 1.1797 7.957 2 0 Median 0.91518 0.764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21404000 9748100 11656000 0 0 0 5970200 2978300 2991900 13608000 5810500 7797400 1825700 959330 866370 0 0 0 0 0 0 21525 4262 22444;22445 113565;113566;113567;113568;113569 114633;114634;114635;114636;114637;114638;114639 114635 1912 7 LLTGLYR LVGLCDSGKTLLFVRLLTGLYRDTQTSITD GKTLLFVRLLTGLYRDTQTSITDSCAVYRV R L L Y R D 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 0 1 0 1 0 0 0 7 0 834.49634 Q9Y5M8;C9J5Z8 Q9Y5M8 84 90 SRPRB Signal recognition particle receptor subunit beta yes no 2 0.011827 79.454 By MS/MS By MS/MS 1 1 1.3832 1.3112 5.4322 2 Median 1.4561 1.3625 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.314 1.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18719000 7752900 10966000 11723000 4651900 7070900 0 0 0 6996400 3101000 3895400 0 0 0 0 0 0 0 0 0 21526 4463 22446 113570;113571 114640;114641;114642 114642 3 LLTGPVVR IVKQSGFVPESMFDRLLTGPVVRGEGASRR PESMFDRLLTGPVVRGEGASRRGRRPKSEI R L L V R G 0 1 0 0 0 0 0 1 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 853.53854 Q9P2D1 Q9P2D1 2703 2710 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.0058623 84.244 By MS/MS 2 0.80215 0.86037 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80215 0.86037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5445400 2968700 2476600 0 0 0 0 0 0 5445400 2968700 2476600 0 0 0 0 0 0 0 0 0 21527 4220 22447 113572;113573 114643;114644 114643 2 LLTGVEYVVGR KLLPAAGPAGGEPYRLLTGVEYVVGRKNCA EPYRLLTGVEYVVGRKNCAILIENDQSISR R L L G R K 0 1 0 0 0 0 1 2 0 0 2 0 0 0 0 0 1 0 1 3 0 0 11 0 1204.6816 O60934;E5RGU1;E2QRP0 O60934 18 28 NBN Nibrin yes no 2 0.00015601 82.287 By MS/MS By MS/MS 3 1 1.1205 1.1286 33.257 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3477 1.3308 28.676 3 0 Median 0.93162 0.80585 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26110000 13472000 12638000 0 0 0 0 0 0 19997000 10259000 9738100 6112400 3212900 2899400 0 0 0 0 0 0 21528 1641 22448 113574;113575;113576;113577 114645;114646 114645 2 LLTGWMPTAIR MVSVVELKQSSVMQRLLTGWMPTAIRGDQS VMQRLLTGWMPTAIRGDQSPSDRPLSLAVH R L L I R G 1 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 2 1 0 0 0 0 11 0 1257.6904 Q12769;G3V198;E9PR16 Q12769 266 276 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.00095102 81.594 By MS/MS By MS/MS By MS/MS By matching 1 4 2 1 1.115 1.1164 26.954 7 Median 1.115 1.1164 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0215 1.1386 7.1306 3 1 Median 1.2225 1.0525 7.3458 2 0 Median 1.8336 2.1977 NaN 1 0 Median NaN NaN NaN 0 0 Median 22532000 11157000 11375000 928830 481630 447200 0 0 0 20175000 10089000 10086000 1060700 458470 602250 367630 128030 239600 0 0 0 21529 2756 22449 113578;113579;113580;113581;113582;113583;113584;113585 114647;114648;114649;114650;114651;114652 114651 6 LLTHHKDHFTK RQDLMNIAGTTLSSKLLTHHKDHFTKLAVE LSSKLLTHHKDHFTKLAVEAVLRLKGSGNL K L L T K L 0 0 0 1 0 0 0 0 3 0 2 2 0 1 0 0 2 0 0 0 0 0 11 1 1375.7361 P78371;F5GWF6;F8VQ14 P78371 171 181 CCT2 T-complex protein 1 subunit beta yes no 3 0.068096 13.679 By MS/MS 1 1.2662 1.2085 NaN 1 Median 1.2662 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1550500 643430 907080 1550500 643430 907080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21530 2644 22450 113586 114653 114653 1 LLTHNLLSSHVR ______________________________ ______________________________ K L L V R G 0 1 1 0 0 0 0 0 2 0 4 0 0 0 0 2 1 0 0 1 0 0 12 0 1388.7888 Q9UI30;F5GX77 Q9UI30 3 14 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 2;3 1.1953E-30 213.8 By MS/MS By MS/MS By MS/MS 2 2 2 1.2513 1.2449 23.198 6 Median 1.2167 1.1775 10.509 2 0 Median 1.5552 1.3313 49.016 2 0 Median 1.2513 1.2662 5.0474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 393200000 183050000 210150000 96776000 42727000 54048000 261440000 124270000 137170000 34987000 16059000 18928000 0 0 0 0 0 0 0 0 0 21531 1005 22451 113587;113588;113589;113590;113591;113592 114654;114655;114656;114657;114658;114659;114660;114661;114662;114663;114664;114665 114665 12 LLTHTFVAQPGLSR IALTKNPKKRPTAERLLTHTFVAQPGLSRA RLLTHTFVAQPGLSRALAVELLDKVNNPDN R L L S R A 1 1 0 0 0 1 0 1 1 0 3 0 0 1 1 1 2 0 0 1 0 0 14 0 1538.8569 Q9Y4K4 Q9Y4K4 271 284 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 yes yes 3 0.00067323 57.434 By MS/MS 1 0.86289 0.9181 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86289 0.9181 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7340500 3694200 3646300 0 0 0 0 0 0 7340500 3694200 3646300 0 0 0 0 0 0 0 0 0 21532 4446 22452 113593 114666 114666 1 LLTIGDANGEIQR GAGPCATVSVFPGARLLTIGDANGEIQRHA ARLLTIGDANGEIQRHAEQQALRLEVRAGP R L L Q R H 1 1 1 1 0 1 1 2 0 2 2 0 0 0 0 0 1 0 0 0 0 0 13 0 1398.7467 Q86X55;K7EK20;K7EPK1 Q86X55 37 49 CARM1 Histone-arginine methyltransferase CARM1 yes no 2 3.8838E-07 109.42 By MS/MS By MS/MS By matching 2 1 1 1.0596 1.0483 16.274 4 Median 1.1191 1.0757 18.345 2 0 Median 1.0055 0.87206 NaN 1 0 Median 1.1167 1.163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36410000 17908000 18502000 28903000 14535000 14367000 3885500 1862400 2023200 3621600 1510200 2111400 0 0 0 0 0 0 0 0 0 21533 3299 22453 113594;113595;113596;113597 114667;114668 114667 2 LLTLGLSLLHADVVPNATIR GSMNRHVAAIGPRFKLLTLGLSLLHADVVP LSLLHADVVPNATIRNVLREKIYSTAFDYF K L L I R N 2 1 1 1 0 0 0 1 1 1 6 0 0 0 1 1 2 0 0 2 0 0 20 0 2115.2416 P42356;Q8N8J0;A4QPH2 P42356 1352 1371 PI4KA;PI4KAP1;PI4KAP2 Phosphatidylinositol 4-kinase alpha;Putative inactive phosphatidylinositol 4-kinase alpha-like protein P1;Putative phosphatidylinositol 4-kinase alpha-like protein P2 yes no 3 0.0067026 31.753 By MS/MS 1 0.97892 0.8331 NaN 1 Median NaN NaN NaN 0 0 Median 0.97892 0.8331 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3591700 1584400 2007300 0 0 0 3591700 1584400 2007300 0 0 0 0 0 0 0 0 0 0 0 0 21534 2311 22454 113598 114669 114669 1 LLTLPNGER PEWVENLNSVLDDNKLLTLPNGERLSLPPN VLDDNKLLTLPNGERLSLPPNVRIMFEVQD K L L E R L 0 1 1 0 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 9 0 1011.5713 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2324 2332 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.9434E-06 157.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 0.87896 0.79312 10.07 8 Median 0.68991 0.67487 NaN 1 0 Median 0.91039 0.76343 3.7823 2 0 Median 0.82444 0.89068 6.1307 2 0 Median 0.95799 0.83835 6.2316 2 0 Median NaN NaN NaN 0 0 Median 0.92282 0.7731 NaN 1 0 Median 61017000 32029000 28988000 12634000 7729300 4904200 19717000 9439300 10277000 18971000 10216000 8755300 8977900 4278100 4699800 0 0 0 717410 365950 351460 21535 2865 22455 113599;113600;113601;113602;113603;113604;113605;113606 114670;114671;114672;114673;114674;114675;114676;114677;114678;114679;114680 114672 11 LLTLVSTR TPGEKMKILHALCGKLLTLVSTRDFIEDYV LHALCGKLLTLVSTRDFIEDYVDILRQAKQ K L L T R D 0 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 2 0 0 1 0 0 8 0 901.55967 Q9NRL2;A0A087WWN7 Q9NRL2 624 631 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 0.0035442 89.752 By MS/MS By MS/MS 1 1 1.4613 1.4394 10.558 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2159 1.3359 NaN 1 0 Median 1.7563 1.551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7195400 3272600 3922800 0 0 0 0 0 0 6281500 2963500 3318000 913900 309070 604830 0 0 0 0 0 0 21536 4084 22456 113607;113608 114681;114682 114681 2 LLTQDEGPALVPGGR AILIRDPRTARMGWRLLTQDEGPALVPGGR LLTQDEGPALVPGGRLGDLWDYHQHRYLQG R L L G R L 1 1 0 1 0 1 1 3 0 0 3 0 0 0 2 0 1 0 0 1 0 0 15 0 1521.8151 Q5T440 Q5T440 198 212 IBA57 Putative transferase CAF17, mitochondrial yes yes 2 2.6119E-07 93.258 By MS/MS By MS/MS 1 1 0.7915 0.71355 14.466 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66104 0.64417 NaN 1 1 Median 0.9477 0.7904 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14389000 8715600 5673600 0 0 0 0 0 0 10963000 6980200 3982500 3426500 1735400 1691100 0 0 0 0 0 0 21537 3087 22457 113609;113610 114683;114684 114683 2 LLTQFPNAEK YRGKEYERREDFEARLLTQFPNAEKMKTTS DFEARLLTQFPNAEKMKTTSPPGDDIKNSP R L L E K M 1 0 1 0 0 1 1 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 10 0 1159.6237 A0A096LNH6;Q14185;Q9H7D0 A0A096LNH6 1395 1404 DOCK1;DOCK5 Dedicator of cytokinesis protein 1;Dedicator of cytokinesis protein 5 no no 2 0.028205 48.283 By MS/MS 1 1.0372 0.93878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0372 0.93878 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2139700 981310 1158400 0 0 0 0 0 0 0 0 0 2139700 981310 1158400 0 0 0 0 0 0 21538 140;3981 22458 113611 114685 114685 1 LLTQGFTNWNK EAESLNDEELEEKEKLLTQGFTNWNKRDFN EKEKLLTQGFTNWNKRDFNQFIKANEKWGR K L L N K R 0 0 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 11 0 1320.6826 O60264 O60264 837 847 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00019545 75.378 By matching By MS/MS By MS/MS By matching 1 1 3 1 0.95363 0.94339 17.454 5 Median 0.8052 0.75273 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1099 1.1949 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86753 0.88749 10.03 2 1 Median 1.1592 0.94339 NaN 1 0 Median 26734000 13132000 13602000 8019500 4440900 3578600 0 0 0 6592600 2460100 4132600 0 0 0 11750000 6067200 5682800 372170 163950 208220 21539 1608 22459 113612;113613;113614;113615;113616;113617 114686;114687;114688 114686 3 LLTQGFTNWNKR EAESLNDEELEEKEKLLTQGFTNWNKRDFN KEKLLTQGFTNWNKRDFNQFIKANEKWGRD K L L K R D 0 1 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 12 1 1476.7837 O60264 O60264 837 848 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 2.9237E-15 191.85 By MS/MS By matching By MS/MS By MS/MS 2 2 5 3 1.1923 1.2414 14.665 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1124 1.2623 3.7973 2 0 Median 1.4366 1.3806 25.195 2 0 Median 1.1398 1.2542 16.942 5 0 Median 1.3141 1.1435 8.3248 3 1 Median 168880000 72451000 96432000 0 0 0 0 0 0 76264000 33414000 42851000 2411400 861150 1550300 86704000 36722000 49982000 3502900 1454100 2048800 21540 1608 22460 113618;113619;113620;113621;113622;113623;113624;113625;113626;113627;113628;113629 114689;114690;114691;114692;114693;114694;114695;114696;114697;114698;114699;114700;114701;114702 114691 14 LLTQGFTNWTK GAEPLTPEETEEKEKLLTQGFTNWTKRDFN EKEKLLTQGFTNWTKRDFNQFIKANEKYGR K L L T K R 0 0 1 0 0 1 0 1 0 0 2 1 0 1 0 0 3 1 0 0 0 0 11 0 1307.6874 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 840 850 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.00096639 61.65 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 0.99805 0.99142 14.667 6 Median 1.0557 1.0509 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94351 1.0088 NaN 1 0 Median 1.6415 1.3855 NaN 1 0 Median 0.91323 0.94608 4.1602 2 0 Median 1.1351 0.97186 NaN 1 0 Median 28580000 14414000 14166000 3669100 1799400 1869700 0 0 0 8946400 4548800 4397600 591480 234370 357110 15138000 7727300 7411100 234300 103550 130750 21541 167;643 22461 113630;113631;113632;113633;113634;113635 114703;114704 114704 2 LLTQGFTNWTKR GAEPLTPEETEEKEKLLTQGFTNWTKRDFN KEKLLTQGFTNWTKRDFNQFIKANEKYGRD K L L K R D 0 1 1 0 0 1 0 1 0 0 2 1 0 1 0 0 3 1 0 0 0 0 12 1 1463.7885 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 840 851 SMARCA1 Probable global transcription activator SNF2L1 no no 3 0.0042676 51.013 By MS/MS 1 1.0741 1.2183 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0741 1.2183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3534000 2109600 1424500 0 0 0 0 0 0 3534000 2109600 1424500 0 0 0 0 0 0 0 0 0 21542 167;643 22462 113636 114705 114705 1 LLTQHENIKNEIDNYEEDYQK IASEDMPNTLTEAEKLLTQHENIKNEIDNY NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA K L L Q K M 0 0 3 2 0 2 4 0 1 2 2 2 0 0 0 0 1 0 2 0 0 0 21 1 2635.2402 Q01082;A0A087WUZ3 Q01082 1100 1120 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 1.6805E-26 150.98 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 2 1 1 0.98996 0.9933 8.5698 11 Median 1.1121 1.0447 4.5776 3 0 Plateau 1.1358 1.0886 11.152 4 1 Median 0.823 0.95974 2.3065 2 0 Median 0.98996 0.9277 NaN 1 0 Median 0.89104 0.95161 NaN 1 0 Median NaN NaN NaN 0 0 Median 276950000 139980000 136980000 55298000 25372000 29926000 22777000 11451000 11326000 193880000 100410000 93469000 1864800 961840 902970 3134400 1782000 1352400 0 0 0 21543 2681 22463 113637;113638;113639;113640;113641;113642;113643;113644;113645;113646;113647 114706;114707;114708;114709;114710;114711;114712;114713;114714;114715;114716 114709 11 LLTQMESEKENLQSK EEKTLFSCWKSENEKLLTQMESEKENLQSK LLTQMESEKENLQSKINHLETCLKTQQIKS K L L S K I 0 0 1 0 0 2 3 0 0 0 3 2 1 0 0 2 1 0 0 0 0 0 15 1 1776.8928 P49454 P49454 629 643 CENPF Centromere protein F yes yes 2;3 1.0056E-06 90.707 By MS/MS By MS/MS 3 1 0.97799 1.1059 35.677 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92698 1.0535 40.298 3 0 Median 1.1426 1.1609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33676000 16040000 17636000 0 0 0 0 0 0 30912000 14653000 16259000 2763600 1387100 1376500 0 0 0 0 0 0 21544 2383 22464 113648;113649;113650;113651 114717;114718;114719;114720;114721 114717 5 LLTQYILNLGK NLGAKLYLTNSKQTKLLTQYILNLGKYDQN KQTKLLTQYILNLGKYDQNYDIRDRTRFIR K L L G K Y 0 0 1 0 0 1 0 1 0 1 4 1 0 0 0 0 1 0 1 0 0 0 11 0 1274.7598 O00203 O00203 553 563 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.0028762 51.059 By MS/MS By matching By matching By matching By matching By matching 4 1 2 1 1 1 1.265 1.2908 49.604 10 Median 1.0187 1.0084 15.502 4 0 Median 1.0798 0.91313 NaN 1 0 Median 2.1056 2.2235 70.846 2 0 Median 1.5577 1.3765 NaN 1 0 Median 2.9157 2.9918 NaN 1 0 Median 2.1107 1.7276 NaN 1 0 Median 25275000 11734000 13542000 9637900 4771600 4866300 12436000 5881500 6554600 1847600 672740 1174800 77811 30759 47052 946470 216340 730130 329510 160780 168730 21545 1447 22465 113652;113653;113654;113655;113656;113657;113658;113659;113660;113661 114722 114722 1 LLTSFLPAQLLR ATGNRWCSWSLSQARLLTSFLPAQLLRLYQ QARLLTSFLPAQLLRLYQLMLFTLPGTPVF R L L L R L 1 1 0 0 0 1 0 0 0 0 5 0 0 1 1 1 1 0 0 0 0 0 12 0 1370.8286 F5GZS6;J3KPF3;P08195;H0YFX4 F5GZS6 409 420 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 4.0931E-06 105.4 By MS/MS By MS/MS By MS/MS By matching By matching 7 4 1 1 1 1.1486 1.1401 41.797 14 Median 1.3743 1.3514 27.077 7 0 Median 0.73198 0.64428 11.009 4 0 Median 1.3528 1.444 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7869 1.8765 NaN 1 0 Median 0.88625 0.78368 NaN 1 0 Median 76974000 40463000 36510000 19939000 8665000 11274000 54374000 30595000 23779000 2245800 1023800 1222000 0 0 0 363320 148920 214400 51996 30335 21661 21546 1016 22466 113662;113663;113664;113665;113666;113667;113668;113669;113670;113671;113672;113673;113674;113675 114723;114724;114725;114726;114727;114728;114729;114730;114731;114732;114733;114734;114735;114736;114737 114734 15 LLTSGYLQR FNDQSTSDYLVVYLRLLTSGYLQRESKFFE LVVYLRLLTSGYLQRESKFFEHFIEGGRTV R L L Q R E 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1049.5869 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8;F5H3F0 J3KR44 178 186 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2 0.00045891 124.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.2 1.0469 21.181 7 Median 1.1158 1.0482 0.17653 2 1 Median 1.1636 0.9767 6.8773 2 0 Median 1.2694 1.2428 NaN 1 0 Median 1.2 1.0007 NaN 1 0 Median 1.7154 1.7414 NaN 1 0 Median NaN NaN NaN 0 0 Median 392390000 181960000 210430000 301490000 139860000 161630000 79395000 37363000 42032000 8729100 3589100 5139900 2482900 1010900 1472000 294590 135290 159300 0 0 0 21547 1322 22467 113676;113677;113678;113679;113680;113681;113682;113683 114738;114739;114740;114741;114742;114743;114744;114745;114746;114747;114748;114749;114750 114740 13 LLTTDQK RHPVNAACFSPDGARLLTTDQKSEIRVYSA CFSPDGARLLTTDQKSEIRVYSASQWDCPL R L L Q K S 0 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 7 0 817.45453 Q92466 Q92466 303 309 DDB2 DNA damage-binding protein 2 yes yes 2 0.035995 47.045 By matching By matching By MS/MS 1 2 1 1.1614 1.0691 18.714 4 Median 1.1374 1.0876 NaN 1 0 Median 1.2932 1.1801 16.405 2 0 Median 0.80586 0.83939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3651200 1568400 2082700 1164200 496890 667310 1721100 638040 1083100 765830 433510 332320 0 0 0 0 0 0 0 0 0 21548 3527 22468 113684;113685;113686;113687 114751;114752 114751 2 LLTTIGKDLDFEK LLKNHDEESLECLCRLLTTIGKDLDFEKAK CRLLTTIGKDLDFEKAKPRMDQYFNQMEKI R L L E K A 0 0 0 2 0 0 1 1 0 1 3 2 0 1 0 0 2 0 0 0 0 0 13 1 1491.8185 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;A0A0U1RQK7;A0A0A0MSA7;O43432 E7EX73 775 787 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 no no 2;3 1.1326E-05 120.15 By MS/MS By matching By matching 3 2 1 1.1661 1.1281 30.652 6 Median 1.204 1.1635 26.595 3 0 Median NaN NaN NaN 0 0 Median 1.1911 1.3625 32.992 2 0 Median NaN NaN NaN 0 0 Median 0.76478 0.79948 NaN 1 0 Median NaN NaN NaN 0 0 Median 25919000 11399000 14520000 21732000 9222400 12509000 0 0 0 2750300 1367800 1382500 0 0 0 1437300 809030 628260 0 0 0 21549 894;300 22469 113688;113689;113690;113691;113692;113693 114753;114754;114755;114756 114756 4 LLTTILHSDGDLTEQGK GMKNNHSKSGTSTLRLLTTILHSDGDLTEQ TTILHSDGDLTEQGKISKPDMSRLRLAAGS R L L G K I 0 0 0 2 0 1 1 2 1 1 4 1 0 0 0 1 3 0 0 0 0 0 17 0 1839.9578 Q9NTI5 Q9NTI5 853 869 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 2.6571E-18 171.32 By MS/MS By matching By MS/MS By matching 3 3 3 2 0.92016 1.0007 27.842 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89514 0.99687 3.3767 3 0 Median 1.1943 1.0181 34.079 3 0 Median 0.97861 1.0137 25.519 2 0 Median 1.1212 0.95188 62.174 2 0 Median 117200000 58120000 59081000 0 0 0 0 0 0 94947000 47598000 47349000 5067500 2119600 2947900 15931000 7722200 8208600 1255700 680240 575460 21550 4107 22470 113694;113695;113696;113697;113698;113699;113700;113701;113702;113703;113704 114757;114758;114759;114760;114761;114762;114763 114761 7 LLTTLEQEVQK L L Q K 0 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 11 0 1300.7238 REV__Q15149 yes yes 2 0.0013 59.8 By matching By MS/MS 1 2 2.2813 2.4842 53.06 3 Median NaN NaN NaN 0 0 Median 1.1364 0.99095 NaN 1 0 Median 2.2813 2.4842 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9733400 3708800 6024600 0 0 0 4359000 1967700 2391400 5374400 1741100 3633200 0 0 0 0 0 0 0 0 0 + 21551 4540 22471 113705;113706;113707 114764 114764 1 LLTVPFEK HTGKLCWFLDEAAARLLTVPFEKHSTL___ LDEAAARLLTVPFEKHSTL___________ R L L E K H 0 0 0 0 0 0 1 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 8 0 945.55352 O95336;M0R1L2 O95336 247 254 PGLS 6-phosphogluconolactonase yes no 2 0.010149 77.282 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1 0.9113 0.88899 11.134 7 Median 0.87259 0.8277 10.101 2 1 Median 1.1466 0.96407 NaN 1 0 Median 0.80737 0.75706 NaN 1 0 Median 0.90689 0.74349 NaN 1 0 Median 0.92313 0.94802 NaN 1 0 Median 1.0042 0.9031 NaN 1 0 Median 95728000 52292000 43436000 78554000 43378000 35175000 4810300 2312100 2498300 10096000 5448000 4647700 336340 172740 163610 1386700 796680 590020 545510 184090 361420 21552 1764 22472 113708;113709;113710;113711;113712;113713;113714 114765;114766 114765 2 LLTVQHPLEESR LKRGVQQLTRLRHPRLLTVQHPLEESRDCL HPRLLTVQHPLEESRDCLAFCTEPVFASLA R L L S R D 0 1 0 0 0 1 2 0 1 0 3 0 0 0 1 1 1 0 0 1 0 0 12 0 1420.7674 F8VSC5;A0A0U1RQQ9;Q6P3W7 F8VSC5 101 112 SCYL2 SCY1-like protein 2 yes no 3 0.023826 34.685 By MS/MS 1 0.64667 0.69461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64667 0.69461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3251600 2033600 1217900 0 0 0 0 0 0 3251600 2033600 1217900 0 0 0 0 0 0 0 0 0 21553 304 22473 113715 114767 114767 1 LLTVYCVR ______________________________ ______________________________ M L L V R R 0 1 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 1 2 0 0 8 0 1022.5583 Q5TDH0 Q5TDH0 2 9 DDI2 Protein DDI1 homolog 2 yes yes 2 0.059972 51.572 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21554 3103 22474 113716 114768 114768 1 LLTWDVK ______________________________ MAHRLQIRLLTWDVKDTLLRLRHPLGEAYA R L L V K D 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 7 0 873.496 Q9BSH5 Q9BSH5 9 15 HDHD3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 yes yes 2 0.044246 43 By MS/MS By matching 1 1 1.6316 1.4564 41.433 2 Median 1.1656 1.0865 NaN 1 0 Median 2.2839 1.9521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5135000 2281200 2853800 4375100 2112800 2262300 759820 168350 591470 0 0 0 0 0 0 0 0 0 0 0 0 21555 3814 22475 113717;113718 114769;114770 114769 2 LLTWVIGTGSPR DENGPELLPRVAMLRLLTWVIGTGSPRLQV MLRLLTWVIGTGSPRLQVLASDTLTTLCAS R L L P R L 0 1 0 0 0 0 0 2 0 1 2 0 0 0 1 1 2 1 0 1 0 0 12 0 1298.7347 Q92616 Q92616 1043 1054 GCN1L1 Translational activator GCN1 yes yes 2 5.4737E-06 98.943 By MS/MS By MS/MS By matching 1 1 1 1.3096 1.0938 15.863 3 Median 1.4568 1.3672 NaN 1 0 Median 1.1808 1.0059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3096 1.0938 NaN 1 0 Median 28501000 12739000 15762000 17047000 7408100 9638900 11173000 5197600 5975900 0 0 0 0 0 0 0 0 0 280760 133330 147430 21556 3544 22476 113719;113720;113721 114771;114772;114773;114774 114773 4 LLTYNAAR QHQVAHVATQLEAARLLTYNAARLLEAGKP TQLEAARLLTYNAARLLEAGKPFIKEASMA R L L A R L 2 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 920.50797 P45954 P45954 348 355 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.0040847 83.614 By MS/MS By MS/MS By matching 1 1 1 0.9778 1.0549 29.961 3 Median 0.90689 0.90081 NaN 1 0 Median 1.8524 1.6082 NaN 1 0 Median 0.9778 1.0549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10745000 4648600 6096400 4452500 2031700 2420700 4544100 1785100 2759000 1748400 831810 916620 0 0 0 0 0 0 0 0 0 21557 2330 22477 113722;113723;113724 114775;114776;114777;114778 114778 4 LLTYNSLYK PLTQKHGLGYSLLERLLTYNSLYKKGPDGY YSLLERLLTYNSLYKKGPDGYDPQFITKLL R L L Y K K 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 2 0 0 0 9 0 1113.607 Q9HCE1;Q5JR04 Q9HCE1 706 714 MOV10 Putative helicase MOV-10 yes no 2 0.016483 42.599 By MS/MS By MS/MS By matching 1 1 1 1.0817 1.0529 34.763 3 Median 1.0817 1.0529 NaN 1 0 Median 1.8736 1.6313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95022 0.82099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10014000 4244600 5769200 6046700 2619400 3427400 2930200 1088700 1841500 0 0 0 1036900 536510 500420 0 0 0 0 0 0 21558 4029 22478 113725;113726;113727 114779;114780 114779 2 LLVATSVAAR DRDSIINDFKNGTCKLLVATSVAARGLDVK NGTCKLLVATSVAARGLDVKHLILVVNYSC K L L A R G 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 10 0 999.60768 Q7L014;A0A0C4DG89 Q7L014 672 681 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 3.0618E-05 143.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 5 1 2 1.1886 1.1 19.743 18 Median 0.88233 0.85025 9.0799 3 2 Median 1.1606 1.0135 21.393 4 1 Median 1.2485 1.3304 7.2287 3 0 Median 1.3838 1.1924 14.654 5 0 Median 1.2741 1.3439 NaN 1 1 Median 1.0966 0.91638 0.78171 2 0 Median 133330000 62777000 70553000 21235000 10898000 10338000 12927000 6711100 6215800 75150000 34517000 40633000 13964000 6028700 7935300 3901400 1704600 2196800 6152400 2918300 3234200 21559 3216 22479 113728;113729;113730;113731;113732;113733;113734;113735;113736;113737;113738;113739;113740;113741;113742;113743;113744;113745 114781;114782;114783;114784;114785;114786;114787;114788;114789;114790;114791;114792;114793;114794 114790 14 LLVDVDESTLSPEEQK NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ LVDVDESTLSPEEQKERKIMKLLLKIKNGT K L L Q K E 0 0 0 2 0 1 3 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 16 0 1800.8993 O75533 O75533 478 493 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.017808 41.283 By MS/MS By MS/MS 2 1 1.1692 1.0259 13.057 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2473 1.069 5.8215 2 0 Median 0.83477 0.86254 NaN 1 1 Median NaN NaN NaN 0 0 Median 3908100 2006400 1901700 0 0 0 0 0 0 0 0 0 1215600 558970 656600 2692600 1447500 1245100 0 0 0 21560 1683 22480 113746;113747;113748 114795;114796 114795 2 LLVDVDESTLSPEEQKER NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ DVDESTLSPEEQKERKIMKLLLKIKNGTPP K L L E R K 0 1 0 2 0 1 4 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 18 1 2086.043 O75533 O75533 478 495 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 8.9958E-14 157.52 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.88876 0.96743 9.2185 6 Median 0.91887 0.9568 NaN 1 0 Median 1.069 1.0089 NaN 1 0 Median 0.84696 0.96061 18.564 2 0 Median NaN NaN NaN 0 0 Median 0.83531 0.93473 6.4235 2 0 Median NaN NaN NaN 0 0 Median 132880000 68254000 64627000 7481300 3877500 3603800 2913600 1421900 1491700 71223000 35249000 35974000 0 0 0 51263000 27706000 23557000 0 0 0 21561 1683 22481 113749;113750;113751;113752;113753;113754 114797;114798;114799;114800 114799 4 LLVEFAR PGGHQTVLFSATLPKLLVEFARAGLTEPVL LFSATLPKLLVEFARAGLTEPVLIRLDVDT K L L A R A 1 1 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 846.49634 Q8TDD1;F8VRX4 Q8TDD1 284 290 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.0533 1.1163 1.4818 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0525 1.128 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0541 1.1046 NaN 1 0 Median NaN NaN NaN 0 0 Median 8414800 4365900 4048900 0 0 0 0 0 0 3778800 2123400 1655400 0 0 0 4636000 2242500 2393500 0 0 0 21562 3470 22482 113755;113756 114801;114802;114803 114803 3 LLVFTAAGVKPQGK KRMRKSNPGWENLEKLLVFTAAGVKPQGKV KLLVFTAAGVKPQGKVAGFDLDGTLITTRS K L L G K V 2 0 0 0 0 1 0 2 0 0 2 2 0 1 1 0 1 0 0 2 0 0 14 1 1427.85 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1;A0A0D9SEV0;M0R000;A0A0D9SFD6 M0QYH2 153 166 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2;3 4.9539E-05 90.108 By MS/MS By MS/MS By matching 3 2 2 1.0446 0.93103 16.033 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77003 0.80078 8.4989 3 0 Median 1.1708 1.1703 6.1551 2 0 Median NaN NaN NaN 0 0 Median 1.0665 0.95051 2.9287 2 0 Median 67641000 36651000 30990000 0 0 0 0 0 0 63358000 34641000 28717000 3136600 1417500 1719100 0 0 0 1146800 592810 554010 21563 1418 22483 113757;113758;113759;113760;113761;113762;113763 114804;114805;114806;114807;114808;114809;114810;114811 114808 8 LLVGNDDVHIIAR QLSSSLPLQSRGRARLLVGNDDVHIIARSD ARLLVGNDDVHIIARSDDELLDDFFHDQST R L L A R S 1 1 1 2 0 0 0 1 1 2 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1433.7991 Q7Z6Z7 Q7Z6Z7 2606 2618 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 1.0824E-07 152.54 By MS/MS By MS/MS By MS/MS 4 3 1 1.2235 1.0742 17.552 8 Median 1.0703 1.0175 6.5494 4 1 Median 1.6345 1.3662 18.713 3 1 Median 1.28 1.3999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199080000 93320000 105760000 153210000 74530000 78681000 42593000 17286000 25307000 3272200 1503900 1768400 0 0 0 0 0 0 0 0 0 21564 3253 22484 113764;113765;113766;113767;113768;113769;113770;113771 114812;114813;114814;114815;114816;114817;114818;114819;114820;114821;114822;114823 114821 12 LLVGSEDYGR FRDMDDEESWIKEKKLLVGSEDYGRDLTGV IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K L L G R D 0 1 0 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1107.556 A0A0D9SF54;Q13813 Q13813 1785 1794 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 2.1078E-05 146.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1.1208 1.0434 14.796 6 Median 1.4532 1.3639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94993 1.0356 NaN 1 0 Median 1.1724 1.0293 2.9667 2 0 Median 1.1018 1.1271 NaN 1 0 Median 1.05 0.86963 NaN 1 0 Median 146100000 69914000 76181000 13527000 5359300 8167900 0 0 0 78763000 39264000 39499000 30364000 14504000 15859000 16932000 7665200 9266300 6509700 3121100 3388700 21565 264;2838 22485 113772;113773;113774;113775;113776;113777;113778 114824;114825;114826;114827;114828;114829;114830;114831;114832;114833;114834;114835 114829 12 LLVGVDEK EGGVDVGDVDAKAQKLLVGVDEKLNPEDIK VDAKAQKLLVGVDEKLNPEDIKKHLLVHAP K L L E K L 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 871.50148 P53396 P53396 152 159 ACLY ATP-citrate synthase yes yes 2 0.0033382 98.997 By MS/MS By MS/MS 2 2 1.2523 1.127 36.885 4 Median 0.82234 0.80585 54.362 2 0 Median 1.3088 1.127 1.0228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103530000 43556000 59973000 16746000 7435500 9311000 86782000 36120000 50662000 0 0 0 0 0 0 0 0 0 0 0 0 21566 2467 22486 113779;113780;113781;113782 114836;114837;114838 114838 3 LLVGVDEKLNPEDIKK EGGVDVGDVDAKAQKLLVGVDEKLNPEDIK LVGVDEKLNPEDIKKHLLVHAPEDKKEILA K L L K K H 0 0 1 2 0 0 2 1 0 1 3 3 0 0 1 0 0 0 0 2 0 0 16 2 1809.0248 P53396 P53396 152 167 ACLY ATP-citrate synthase yes yes 3;4 4.0032E-05 52.254 By MS/MS 2 0.97506 1.0221 2.9151 2 Median 0.97506 1.0221 2.9151 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40318000 19607000 20711000 40318000 19607000 20711000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21567 2467 22487 113783;113784 114839;114840;114841;114842 114842 4 LLVHMGLLK AFNSSSFNSNTFLTRLLVHMGLLKSEDKVK NTFLTRLLVHMGLLKSEDKVKAIANLYGPL R L L L K S 0 0 0 0 0 0 0 1 1 0 4 1 1 0 0 0 0 0 0 1 0 0 9 0 1022.6311 P46060 P46060 516 524 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.010767 47.916 By matching By MS/MS By MS/MS By matching 1 1 1 3 1.0752 0.91104 13.547 6 Median NaN NaN NaN 0 0 Median 0.83637 0.74575 NaN 1 0 Median 1.1025 1.1339 NaN 1 0 Median 1.0869 0.93448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0636 0.88819 3.6928 3 0 Median 5540800 2462600 3078200 0 0 0 478930 275050 203880 2821700 1152700 1669100 798930 378290 420640 0 0 0 1441200 656560 784610 21568 2336 22488 113785;113786;113787;113788;113789;113790 114843;114844 114843 2 LLVHQFSNK PEWPAAELLLSLLGRLLVHQFSNKSTEMAL LSLLGRLLVHQFSNKSTEMALRVASLDYLG R L L N K S 0 0 1 0 0 1 0 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1084.6029 A0A590UJS4;Q6KC79 A0A590UJS4 1591 1599 NIPBL Nipped-B-like protein yes no 2 0.011498 62.546 By MS/MS By MS/MS 1 1 0.60354 0.63149 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60354 0.63149 NaN 1 1 Median NaN NaN NaN 0 0 Median 7364600 4762300 2602200 0 0 0 0 0 0 0 0 0 0 0 0 7364600 4762300 2602200 0 0 0 21569 488 22489 113791;113792 114845;114846 114845 2 LLVLEDENANVDEVELKPDTLIK MDILAQVLQILLKSKLLVLEDENANVDEVE ANVDEVELKPDTLIKLYLGYKNKKLRVNIN K L L I K L 1 0 2 3 0 0 4 0 0 1 5 2 0 0 1 0 1 0 0 3 0 0 23 1 2608.3847 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJC4 A0A0C4DGX4 624 646 CUL1 Cullin-1 yes no 3 2.3226E-16 71.592 By matching By MS/MS By matching 1 1 1 0.75046 0.72608 37.495 3 Median 0.50385 0.52208 NaN 1 0 Median 0.75046 0.72608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1293 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4602600 2578000 2024600 1311300 896430 414840 3149100 1626600 1522500 0 0 0 142170 54957 87209 0 0 0 0 0 0 21570 256 22490 113793;113794;113795 114847;114848 114848 2 LLVLYSGEDDELLQR EVQDLFEAQGNDRLKLLVLYSGEDDELLQR LLVLYSGEDDELLQRAAAGGLAMLTSMRPT K L L Q R A 0 1 0 2 0 1 2 1 0 0 5 0 0 0 0 1 0 0 1 1 0 0 15 0 1761.9149 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 962 976 UNC45A Protein unc-45 homolog A yes no 2 4.082E-06 88.441 By matching By MS/MS 1 1 1.2739 1.1902 13.905 2 Median 1.3028 1.3132 NaN 1 0 Median 1.2456 1.0788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5626500 2305200 3321300 1092900 463080 629870 4533600 1842200 2691400 0 0 0 0 0 0 0 0 0 0 0 0 21571 335 22491 113796;113797 114849;114850 114850 2 LLVPAAEGEDSLK RAEIKLKRAVEEVKKLLVPAAEGEDSLKKM KKLLVPAAEGEDSLKKMQLMELAILNGTYR K L L L K K 2 0 0 1 0 0 2 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 13 0 1340.7187 Q96PU8;F5GXS8;F5GYM3;H0YG47;H0YGD6 Q96PU8 178 190 QKI Protein quaking yes no 2 0.012844 34.721 By matching By MS/MS 1 2 0.8445 0.71899 21.336 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6314 0.60389 NaN 1 0 Median 0.96136 0.81473 17.68 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5617100 2981900 2635200 0 0 0 0 0 0 3380400 2065600 1314700 2236700 916300 1320400 0 0 0 0 0 0 21572 3715 22492 113798;113799;113800 114851 114851 1 LLVPAAEGEDSLKK RAEIKLKRAVEEVKKLLVPAAEGEDSLKKM KLLVPAAEGEDSLKKMQLMELAILNGTYRD K L L K K M 2 0 0 1 0 0 2 1 0 0 3 2 0 0 1 1 0 0 0 1 0 0 14 1 1468.8137 Q96PU8;F5GXS8;F5GYM3;H0YG47;H0YGD6 Q96PU8 178 191 QKI Protein quaking yes no 2;3 9.2741E-08 101.95 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 4 3 1 0.94357 0.86953 18.149 10 Median 1.1278 1.051 NaN 1 1 Median 1.0497 0.95164 NaN 1 0 Median 0.65261 0.71117 25.892 4 0 Median 1.0474 0.93262 8.5881 3 0 Plateau 0.81307 0.85604 NaN 1 0 Median NaN NaN NaN 0 0 Median 175410000 103660000 71758000 6650200 2801000 3849100 1874900 946860 928030 135700000 85794000 49911000 28967000 12922000 16045000 2218300 1193600 1024800 0 0 0 21573 3715 22493 113801;113802;113803;113804;113805;113806;113807;113808;113809;113810 114852;114853;114854;114855;114856;114857;114858;114859;114860;114861;114862 114856 11 LLVPGTYK INHPVTTYKTGDYWRLLVPGTYKITASARG KTGDYWRLLVPGTYKITASARGYNPVTKNV R L L Y K I 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 0 1 1 0 0 8 0 889.5273 O75976 O75976 834 841 CPD Carboxypeptidase D no no 2 0.0065188 70.912 By MS/MS By MS/MS 1 1 0.98804 0.91619 23.36 2 Median 0.80202 0.77669 NaN 1 0 Median 1.2172 1.0807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12942000 6580900 6361100 9443000 4993500 4449500 3499000 1587400 1911600 0 0 0 0 0 0 0 0 0 0 0 0 21574 1714 22494 113811;113812 114863;114864;114865 114865 3 LLVPILLPEK ______________________________ GPLKRLLVPILLPEKCYDQLFVQWDLLHVP R L L E K C 0 0 0 0 0 0 1 0 0 1 4 1 0 0 2 0 0 0 0 1 0 0 10 0 1133.7424 J3QS48;I3L295;J3KT75;J3QW43;J3QRD5;O75352;J3KSI4;I3L1D2;I3L4E0;J3KTK8;J3QQZ4;I3L405;I3L261 J3QS48 12 21 MPDU1 Mannose-P-dolichol utilization defect 1 protein yes no 2 0.014003 39.305 By MS/MS By matching By matching 3 1 1 0.80444 0.77353 14.355 5 Median 0.81349 0.80677 10.585 3 0 Plateau 0.75923 0.66308 NaN 1 0 Median 0.84794 0.92841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6626000 3612400 3013500 3682700 2138900 1543900 2597500 1290700 1306800 345790 182910 162870 0 0 0 0 0 0 0 0 0 21575 1281 22495 113813;113814;113815;113816;113817 114866 114866 1 LLVPLVPDLQDVAQLR MIMDSIAAFLVLPNRLLVPLVPDLQDVAQL LVPLVPDLQDVAQLRSPLPRGIIRIHLLAA R L L L R S 1 1 0 2 0 2 0 0 0 0 5 0 0 0 2 0 0 0 0 3 0 0 16 0 1788.0509 Q9BSJ8 Q9BSJ8 308 323 ESYT1 Extended synaptotagmin-1 yes yes 2;3 0.00013347 58.676 By MS/MS By MS/MS By MS/MS By matching 9 6 2 1 0.83745 0.82361 13.307 18 Median 0.7534 0.72572 10.788 9 0 Median 1.0095 0.87912 11.285 6 0 Median 0.84441 0.90291 2.8901 2 0 Median 1.0591 0.94335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26833000 14329000 12504000 18440000 10065000 8375200 7149700 3585300 3564500 1139100 625030 514070 103410 52957 50450 0 0 0 0 0 0 21576 3816 22496 113818;113819;113820;113821;113822;113823;113824;113825;113826;113827;113828;113829;113830;113831;113832;113833;113834;113835 114867;114868;114869;114870;114871;114872;114873;114874;114875;114876 114868 10 LLVPQAQPPMPAQR RPGMPPTMMDPFRKRLLVPQAQPPMPAQRR RLLVPQAQPPMPAQRRGLKRRKMADKVLPQ R L L Q R R 2 1 0 0 0 3 0 0 0 0 2 0 1 0 4 0 0 0 0 1 0 0 14 0 1544.8497 J3KMX2;B9EGA3;Q92925;J3QQL7 J3KMX2 44 57 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 5.2706E-08 143.86 By MS/MS By MS/MS 3 2 0.53252 0.49411 26.066 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47612 0.47108 11.275 3 0 Median 0.76853 0.64241 37.119 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41979000 26902000 15077000 0 0 0 0 0 0 38603000 25065000 13538000 3376600 1837400 1539200 0 0 0 0 0 0 21577 655 22497;22498 113836;113837;113838;113839;113840 114877;114878;114879;114880 114879 241 4 LLVPTQFVGAIIGK PGSVSKQKPCDLPLRLLVPTQFVGAIIGKE RLLVPTQFVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 1 1 0 1 0 0 2 0 0 14 0 1454.8861 O00425 O00425 200 213 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.882E-06 96.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 4 7 3 4 5 0.96407 0.90677 16.705 33 Median 0.81763 0.78333 12.301 10 0 Median 1.0868 0.92197 11.675 4 0 Median 0.96407 1.0071 10.558 7 0 Median 0.96818 0.82795 14.605 3 0 Median 1.1339 1.124 6.0112 4 0 Median 1.153 0.96262 10.661 5 0 Median 77204000 38378000 38826000 15835000 8692400 7142900 27837000 13274000 14563000 14272000 7289300 6982700 3223700 1594800 1628900 13414000 6260100 7153700 2621900 1267100 1354800 21578 1462 22499 113841;113842;113843;113844;113845;113846;113847;113848;113849;113850;113851;113852;113853;113854;113855;113856;113857;113858;113859;113860;113861;113862;113863;113864;113865;113866;113867;113868;113869;113870;113871;113872;113873 114881;114882;114883;114884;114885;114886;114887;114888;114889;114890;114891;114892;114893;114894;114895;114896;114897;114898;114899;114900;114901;114902 114883 22 LLVPTQYVGAIIGK AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE RLLVPTQYVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 0 1 0 1 0 1 2 0 0 14 0 1470.881 Q9NZI8 Q9NZI8 200 213 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 2.3576E-08 120.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 4 4 3 4 3 1.216 1.1317 20.114 22 Median 1.0128 0.96731 28.522 4 0 Median 1.1863 1.0113 14.646 4 0 Median 1.216 1.2408 15.339 4 0 Median 1.4249 1.2714 17.322 3 0 Plateau 1.3891 1.3783 17.967 4 0 Median 1.0914 0.90516 16.705 3 0 Median 147840000 69115000 78722000 47002000 23650000 23353000 23652000 11090000 12562000 24915000 10795000 14120000 881110 210840 670260 25130000 10780000 14350000 26257000 12589000 13668000 21579 4188 22500 113874;113875;113876;113877;113878;113879;113880;113881;113882;113883;113884;113885;113886;113887;113888;113889;113890;113891;113892;113893;113894;113895 114903;114904;114905;114906;114907;114908;114909;114910;114911;114912;114913;114914;114915;114916;114917;114918;114919;114920;114921 114904 19 LLVPYLMEAIR HPVSCKDTPGFIVNRLLVPYLMEAIRLYER IVNRLLVPYLMEAIRLYERGDASKEDIDTA R L L I R L 1 1 0 0 0 0 1 0 0 1 3 0 1 0 1 0 0 0 1 1 0 0 11 0 1316.7526 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQ78;A0A1W2PQV5 A0A0D9SFP2 226 236 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.00042523 69.954 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 1 2 1 1.3865 1.1995 24.969 11 Median 0.98697 0.9585 0.87546 2 0 Median 1.4108 1.2181 31.835 6 0 Median 1.0135 1.0038 NaN 1 0 Median 1.5812 1.3259 1.5536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64072000 27727000 36344000 18431000 8771600 9659100 38833000 15817000 23016000 5178500 2546100 2632400 1589700 571670 1018000 0 0 0 39276 20630 18646 21580 269 22501;22502 113896;113897;113898;113899;113900;113901;113902;113903;113904;113905;113906;113907 114922;114923;114924;114925;114926;114927;114928 114922 133 7 LLVQHEINTLR LIHRKAVPGNVAKLRLLVQHEINTLRAQEK AKLRLLVQHEINTLRAQEKHGLQPALLVHW R L L L R A 0 1 1 0 0 1 1 0 1 1 3 0 0 0 0 0 1 0 0 1 0 0 11 0 1334.767 P49792;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 553 563 RANBP2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2;3 1.5574E-06 163.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 7 7 4 4 1.2122 1.1279 17.562 31 Median 1.351 1.3212 19.409 4 0 Median 1.3332 1.1279 27.828 5 1 Median 1.0376 1.1191 5.703 7 0 Median 1.3137 1.1582 20.496 7 0 Median 1.1766 1.2136 16.605 4 1 Median 1.2918 1.0759 4.8227 4 0 Median 540710000 253160000 287550000 23184000 9278300 13906000 34973000 15405000 19568000 398870000 193160000 205710000 37196000 15171000 22025000 32928000 14614000 18314000 13560000 5535400 8024800 21581 2401;525;3762 22503 113908;113909;113910;113911;113912;113913;113914;113915;113916;113917;113918;113919;113920;113921;113922;113923;113924;113925;113926;113927;113928;113929;113930;113931;113932;113933;113934;113935;113936;113937;113938 114929;114930;114931;114932;114933;114934;114935;114936;114937;114938;114939;114940;114941;114942;114943;114944;114945;114946;114947;114948;114949;114950;114951;114952;114953;114954;114955;114956;114957;114958;114959;114960;114961;114962;114963;114964;114965;114966;114967;114968;114969;114970 114938 42 LLVQTSVQAK VPTQVVQQVQGTQQRLLVQTSVQAKPGHVS GTQQRLLVQTSVQAKPGHVSPLQLTNIQVP R L L A K P 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1085.6445 P22670 P22670 145 154 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.00058909 114.89 By MS/MS 1 0.95977 0.83499 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95977 0.83499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7348600 3390500 3958000 0 0 0 0 0 0 0 0 0 7348600 3390500 3958000 0 0 0 0 0 0 21582 2104 22504 113939 114971;114972 114971 2 LLVSASQDGK HLAKIYAMHWGTDSRLLVSASQDGKLIIWD GTDSRLLVSASQDGKLIIWDSYTTNKVHAI R L L G K L 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1016.5502 E7EP32;P62879;C9JIS1;C9JXA5;C9JZN1;F5H8J8;F5H100;F5H0S8;E9PCP0;P16520;C9JD14;P62873;F6UT28;B1AKQ8;F6X3N5 P62873 69 78 GNB2;GNB3;GNB4;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 2.7968E-10 171.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 3 1.2949 1.1934 26.057 12 Median 0.81774 0.7726 34.519 2 0 Median 1.4729 1.2702 14.384 3 0 Median 1.2727 1.2236 NaN 1 0 Median 1.1696 0.979 16.308 2 0 Median 1.2797 1.2809 NaN 1 0 Median 1.5804 1.3567 18.29 3 0 Median 102340000 45791000 56552000 36332000 16630000 19702000 32636000 14623000 18013000 7548600 3139700 4409000 9824400 4199200 5625200 11546000 5413900 6131900 4455400 1784700 2670700 21583 2603;867 22505 113940;113941;113942;113943;113944;113945;113946;113947;113948;113949;113950;113951 114973;114974;114975;114976;114977;114978;114979;114980;114981;114982;114983;114984 114978 12 LLVSGFWGVAR ECSYTSADGQRHHSKLLVSGFWGVARHFNY HHSKLLVSGFWGVARHFNYVGDLMGSLAYC K L L A R H 1 1 0 0 0 0 0 2 0 0 2 0 0 1 0 1 0 1 0 2 0 0 11 0 1203.6764 Q9UBM7;H0YE57 Q9UBM7 394 404 DHCR7 7-dehydrocholesterol reductase yes no 2 0.0017749 79.906 By MS/MS By matching By matching 3 2 1 1.0304 1.0201 9.0893 6 Median 1.0465 1.0375 9.0308 3 1 Plateau 1.038 0.99522 3.6595 2 0 Median 1.1254 1.1625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15504000 7125100 8378800 9368100 4661600 4706500 5419100 2132000 3287000 716740 331500 385230 0 0 0 0 0 0 0 0 0 21584 4241 22506 113952;113953;113954;113955;113956;113957 114985;114986 114985 2 LLVSGSSDSTLK HVAAVYQIAWSADSRLLVSGSSDSTLKVWD DSRLLVSGSSDSTLKVWDVKAQKLAMDLPG R L L L K V 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 4 1 0 0 1 0 0 12 0 1205.6503 Q9NVX2;A0A0A0MRH0;K7EN33 Q9NVX2 428 439 NLE1 Notchless protein homolog 1 yes no 2 7.8353E-05 104.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.1818 1.0092 19.129 6 Median 0.82138 0.77037 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3296 1.2872 NaN 1 0 Median 1.2934 1.1621 NaN 1 1 Median 0.96689 0.92285 NaN 1 0 Median 1.1903 0.99279 14.968 2 0 Median 41197000 19201000 21995000 6822300 3715500 3106900 0 0 0 11214000 4665300 6548800 8945800 3963800 4982100 11301000 5357600 5943600 2913100 1499200 1413900 21585 4142 22507 113958;113959;113960;113961;113962;113963 114987;114988;114989;114990;114991;114992;114993 114990 7 LLVSQGASIYIENKEEK PLHLACDEERVEEAKLLVSQGASIYIENKE VSQGASIYIENKEEKTPLQVAKGGLGLILK K L L E K T 1 0 1 0 0 1 3 1 0 2 2 2 0 0 0 2 0 0 1 1 0 0 17 1 1920.0204 B1AJY5;B1AJY7;O75832 B1AJY5 149 165 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 3 0.00016195 41.912 By MS/MS By matching 1 1 1.1087 1.0669 1.6626 2 Median 1.0401 1.0544 NaN 1 0 Median 1.182 1.0795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71884000 32525000 39359000 64455000 29380000 35075000 7429400 3145600 4283800 0 0 0 0 0 0 0 0 0 0 0 0 21586 564 22508 113964;113965 114994 114994 1 LLVSQGASIYIENKEEKTPLQVAK PLHLACDEERVEEAKLLVSQGASIYIENKE YIENKEEKTPLQVAKGGLGLILKRMVEG__ K L L A K G 2 0 1 0 0 2 3 1 0 2 3 3 0 0 1 2 1 0 1 2 0 0 24 2 2657.464 B1AJY5;B1AJY7;O75832 B1AJY5 149 172 PSMD10 26S proteasome non-ATPase regulatory subunit 10 yes no 4 0.0069724 21.841 By MS/MS By matching 1 1 0.93864 0.95421 7.6329 2 Median 0.95365 1.0071 NaN 1 0 Median 0.92387 0.90407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13487000 6561200 6925900 10826000 5335700 5490100 2661200 1225500 1435800 0 0 0 0 0 0 0 0 0 0 0 0 21587 564 22509 113966;113967 114995 114995 1 LLVTDMSDAEQYR KINKQHARRVYEILRLLVTDMSDAEQYRSY LRLLVTDMSDAEQYRSYRLDIKRRLISPYK R L L Y R S 1 1 0 2 0 1 1 0 0 0 2 0 1 0 0 1 1 0 1 1 0 0 13 0 1539.7239 O14929 O14929 337 349 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 1.0364E-15 145.34 By MS/MS By matching By MS/MS By MS/MS 4 4 3 2 1.1416 1.0516 40.431 11 Median 1.1377 1.0958 65.691 4 0 Median 1.157 0.99037 9.781 4 0 Median 1.1845 1.1694 11.441 2 1 Median 1.0199 0.8861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63907000 29055000 34852000 26353000 11752000 14602000 9592500 4365600 5226800 23991000 10977000 13014000 3970200 1960900 2009300 0 0 0 0 0 0 21588 1504 22510;22511 113968;113969;113970;113971;113972;113973;113974;113975;113976;113977;113978;113979;113980 114996;114997;114998;114999;115000;115001;115002 114998 484 7 LLVTTSTSLQK ERILNSCTDLMKAIRLLVTTSTSLQKEIVE KAIRLLVTTSTSLQKEIVESGRGAATQQEF R L L Q K E 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 2 3 0 0 1 0 0 11 0 1189.6918 O75146 O75146 836 846 HIP1R Huntingtin-interacting protein 1-related protein yes yes 2 0.00096639 61.65 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.4032 1.3622 23.557 5 Median 1.4032 1.3947 NaN 1 0 Median 1.2075 1.0489 NaN 1 0 Median 1.5108 1.6358 NaN 1 0 Median 0.79992 0.91165 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6335 1.3622 NaN 1 0 Median 12659000 5732900 6926100 2265300 917750 1347600 3104200 1408100 1696100 5281600 2560500 2721100 1304400 594890 709520 0 0 0 703400 251670 451740 21589 1647 22512 113981;113982;113983;113984;113985 115003 115003 1 LLVVDPETDEHFKR AEVVASIKAREDEARLLVVDPETDEHFKRL RLLVVDPETDEHFKRLRVTPTEEHVEGPLP R L L K R L 0 1 0 2 0 0 2 0 1 0 2 1 0 1 1 0 1 0 0 2 0 0 14 1 1696.8784 Q15599;H3BUQ9;H3BN50;H3BQS0 Q15599 225 238 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 3;4 9.1354E-08 116.01 By MS/MS By matching 2 1 0.99052 1.1264 3.7151 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96329 1.0959 3.8888 2 0 Median 1.3105 1.1443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19693000 9373500 10320000 0 0 0 0 0 0 16898000 8165700 8732500 2795000 1207800 1587200 0 0 0 0 0 0 21590 2958 22513 113986;113987;113988 115004;115005;115006 115006 3 LLVVDPETDEQLQK QQVVSRIRAALNAVRLLVVDPETDEQLQKL RLLVVDPETDEQLQKLGVQVREELLRAQEA R L L Q K L 0 0 0 2 0 2 2 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 14 0 1625.8512 O14745;J3QRP6 O14745 88 101 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 2 6.5062E-05 84.17 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.73164 0.69689 45.535 4 Median 0.91609 0.85318 NaN 1 0 Median 1.0889 0.94688 NaN 1 0 Median 0.58433 0.56923 NaN 1 1 Median 0.38785 0.34755 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23474000 13480000 9993800 9663800 4862600 4801100 749440 257850 491590 7787800 4564200 3223600 5273200 3795700 1477400 0 0 0 0 0 0 21591 1493 22514 113989;113990;113991;113992 115007;115008;115009;115010 115008 4 LLVVDQETDEELR HQVVQRIKAVEGQTRLLVVDQETDEELRRR TRLLVVDQETDEELRRRQLTCTEEMAQRGL R L L L R R 0 1 0 2 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 13 0 1557.7886 Q15599;H3BMF5 Q15599 85 97 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 2;3 2.4265E-06 157.95 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.2344 1.1253 36.392 5 Median 2.2312 2.0885 NaN 1 0 Median 1.4706 1.2764 NaN 1 0 Median 1.0308 1.1253 NaN 1 0 Median 1.0621 0.90988 24.819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34755000 16892000 17863000 16858000 8313100 8544500 822340 269880 552470 14811000 7131400 7679500 2263800 1177400 1086400 0 0 0 0 0 0 21592 2958 22515 113993;113994;113995;113996;113997 115011;115012;115013 115012 3 LLVVDQETDEELRR HQVVQRIKAVEGQTRLLVVDQETDEELRRR RLLVVDQETDEELRRRQLTCTEEMAQRGLP R L L R R R 0 2 0 2 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 2 0 0 14 1 1713.8897 Q15599;H3BMF5 Q15599 85 98 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes no 3 0.00053986 43.991 By MS/MS 1 1.2017 1.2317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2017 1.2317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5868800 2534000 3334800 0 0 0 0 0 0 5868800 2534000 3334800 0 0 0 0 0 0 0 0 0 21593 2958 22516 113998 115014 115014 1 LLVVSESSAAQEQDKDK KATLALDSVLTEEGKLLVVSESSAAQEQDK VVSESSAAQEQDKDKAVTCSSIKENALSSG K L L D K A 2 0 0 2 0 2 2 0 0 0 2 2 0 0 0 3 0 0 0 2 0 0 17 1 1845.932 H0YMW2;Q12802 H0YMW2 914 930 AKAP13 A-kinase anchor protein 13 yes no 3 1.0187E-05 52.172 By matching By MS/MS 1 1 0.92585 0.91353 5.3648 2 Median 0.87542 0.87953 NaN 1 0 Median 0.97917 0.94885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5244100 2272500 2971600 2900600 1283800 1616800 2343500 988700 1354800 0 0 0 0 0 0 0 0 0 0 0 0 21594 1201 22517 113999;114000 115015 115015 1 LLVVTDPR GTFTNQIQAAFREPRLLVVTDPRADHQPLT AAFREPRLLVVTDPRADHQPLTEASYVNLP R L L P R A 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 911.54402 C9J9K3;A0A0C4DG17;P08865 C9J9K3 121 128 RPSA 40S ribosomal protein SA yes no 2 0.0048619 79.116 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 1 1 0.98375 0.90377 43.648 13 Median 0.95959 0.96803 15.71 3 0 Plateau 1.071 0.90377 7.8661 3 0 Median 1.0052 0.97536 15.435 3 0 Median 1.0105 0.83782 12.748 2 0 Median 0.98375 0.99665 NaN 1 0 Median 0.2247 0.1996 NaN 1 0 Median 421170000 209260000 211910000 168000000 86327000 81676000 156500000 75741000 80762000 50838000 25047000 25791000 34257000 16024000 18233000 10653000 5369500 5283200 916580 747000 169580 21595 232 22518 114001;114002;114003;114004;114005;114006;114007;114008;114009;114010;114011;114012;114013 115016;115017;115018;115019;115020;115021;115022;115023;115024;115025;115026;115027;115028;115029;115030;115031;115032;115033;115034;115035;115036;115037 115022 22 LLVVYPWTQR AKVKVDEVGGEALGRLLVVYPWTQRFFESF EALGRLLVVYPWTQRFFESFGDLSSADAIL R L L Q R F 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 2 0 0 10 0 1273.7183 CON__Q3SX09;CON__P02070;A0A2R8Y7R2;E9PFT6;F8W6P5;E9PEW8;A0A2R8Y7X9;P69892;P69891;P02100 CON__Q3SX09 86 95 HBD;HBB;HBG2;HBG1;HBE1 Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon no no 2 0.00011874 121.96 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 1 0.040492 0.041479 208.01 7 Median 0.007888 0.007608 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.005163 0.0052153 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.064036 0.064979 202.36 4 4 Median 0.69981 0.56666 NaN 1 1 Median 314680000 310590000 4099000 139920000 139110000 810240 0 0 0 35363000 35294000 68951 0 0 0 136860000 134780000 2082000 2543900 1406200 1137700 + 21596 777 22519 114014;114015;114016;114017;114018;114019;114020 115038;115039;115040;115041;115042;115043;115044;115045;115046 115042 9 LLWAPLVDAVYVK DQAFFSFVFWPFSLKLLWAPLVDAVYVKNF LKLLWAPLVDAVYVKNFGRRKSWLVPTQYI K L L V K N 2 0 0 1 0 0 0 0 0 0 3 1 0 0 1 0 0 1 1 3 0 0 13 0 1485.8595 O00400;A0A2R8YEX5;A0A2R8Y359;H7C532;A0A2R8Y5I5;A0A2R8Y6H1;A0A2R8YF57 O00400 123 135 SLC33A1 Acetyl-coenzyme A transporter 1 yes no 2 0.010536 35.944 By MS/MS By matching 3 1 1.0469 1.0044 31.459 4 Median 1.0201 1.0077 36.59 3 0 Median 1.1339 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676400 1805600 1870800 2966400 1458000 1508500 709960 347640 362320 0 0 0 0 0 0 0 0 0 0 0 0 21597 1459 22520 114021;114022;114023;114024 115047 115047 1 LLWASLR LQTVKSLAGVSLMLRLLWASLRWDDMAAKA AGVSLMLRLLWASLRWDDMAAKAPPGGGTT R L L L R W 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 7 0 857.51232 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1912 1918 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.021555 58.981 By MS/MS By matching 2 2 1.1021 1.1317 11.983 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0465 1.1332 10.786 2 0 Median 1.2463 1.081 17.094 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13784000 6775000 7009000 0 0 0 0 0 0 13339000 6574100 6765100 444890 200970 243920 0 0 0 0 0 0 21598 2762 22521 114025;114026;114027;114028 115048;115049 115048 2 LLWEQLQGLESSK AEVELKWEMEKEEKRLLWEQLQGLESSKQA KRLLWEQLQGLESSKQAETSRLQEELAKLS R L L S K Q 0 0 0 0 0 2 2 1 0 0 4 1 0 0 0 2 0 1 0 0 0 0 13 0 1529.809 A0A087WT45;Q4V328 A0A087WT45 160 172 GRIPAP1 GRIP1-associated protein 1 yes no 2 0.00073465 79.148 By MS/MS 1 1.4603 1.3064 NaN 1 Median NaN NaN NaN 0 0 Median 1.4603 1.3064 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1095100 494420 600660 0 0 0 1095100 494420 600660 0 0 0 0 0 0 0 0 0 0 0 0 21599 15 22522 114029 115050 115050 1 LLWGLEGLPLTVSAVQGAHPVLR EALVAAVRCYDDLSRLLWGLEGLPLTVSAV PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS R L L L R Y 2 1 0 0 0 1 1 3 1 0 6 0 0 0 2 1 1 1 0 3 0 0 23 0 2425.3846 Q9H6R4;A0A0A0MRW6 Q9H6R4 672 694 NOL6 Nucleolar protein 6 yes no 3 5.8372E-05 33.676 By MS/MS 1 0.77826 0.82654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77826 0.82654 NaN 1 0 Median NaN NaN NaN 0 0 Median 2198200 1181400 1016700 0 0 0 0 0 0 0 0 0 0 0 0 2198200 1181400 1016700 0 0 0 21600 3976 22523 114030 115051;115052 115052 2 LLWHGSR ECQRYKPFKQLHNRRLLWHGSRTTNFAGIL FKQLHNRRLLWHGSRTTNFAGILSQGLRIA R L L S R T 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 7 0 867.47152 P09874 P09874 859 865 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.014424 74.439 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 3 1 3 1.1602 1.0675 15.32 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0394 1.1426 8.6141 3 1 Plateau 1.2865 1.0837 11.75 3 0 Median 1.0875 1.0618 NaN 1 0 Median 1.3244 1.0732 25.071 3 1 Median 112280000 51854000 60423000 0 0 0 0 0 0 35117000 17842000 17275000 66814000 29570000 37244000 1238300 467340 770930 9106800 3974500 5132400 21601 1922 22524 114031;114032;114033;114034;114035;114036;114037;114038;114039;114040;114041 115053;115054;115055;115056;115057;115058;115059;115060;115061;115062;115063 115053 11 LLWIDTK QRVLDELKHYYHGFRLLWIDTKIAARMLWR KHYYHGFRLLWIDTKIAARMLWRILNGHSL R L L T K I 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 1 1 0 0 0 0 7 0 887.51165 O95202 O95202 170 176 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.022229 58.167 By MS/MS By matching By matching 1 1 1 1.2317 1.076 28.189 3 Median 0.94127 0.87885 NaN 1 0 Median 1.2317 1.076 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7323 1.5338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13329000 6153700 7175700 5643500 2422400 3221000 7542400 3663200 3879200 0 0 0 143580 68093 75487 0 0 0 0 0 0 21602 1754 22525 114042;114043;114044 115064;115065 115065 2 LLWQDSR TLVLTLPTVAFLEDKLLWQDSRYRPLYPFS TVAFLEDKLLWQDSRYRPLYPFSLPYSDFP K L L S R Y 0 1 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 7 0 916.47667 K7ES61;Q9BYD3 K7ES61 273 279 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2 0.026054 53.554 By MS/MS By matching 1 1 1.3817 1.3012 26.45 2 Median NaN NaN NaN 0 0 Median 1.8832 1.5688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0138 1.0793 NaN 1 0 Median NaN NaN NaN 0 0 Median 7245700 2319900 4925800 0 0 0 5443700 1426900 4016800 0 0 0 0 0 0 1802000 892950 909080 0 0 0 21603 1401 22526 114045;114046 115066 115066 1 LLWTLESLVTGR QHLTRLAEVIQKHQRLLWTLESLVTGRAVR HQRLLWTLESLVTGRAVREVRDGDVQLAQQ R L L G R A 0 1 0 0 0 0 1 1 0 0 4 0 0 0 0 1 2 1 0 1 0 0 12 0 1386.7871 Q8IZ83 Q8IZ83 118 129 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes yes 2 0.0042857 65.347 By MS/MS 1 0.89232 0.77116 NaN 1 Median NaN NaN NaN 0 0 Median 0.89232 0.77116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8913200 4464800 4448400 0 0 0 8913200 4464800 4448400 0 0 0 0 0 0 0 0 0 0 0 0 21604 3348 22527 114047 115067 115067 1 LLWTTSR PQALVQIMRNYSYEKLLWTTSRVLKVLSVC MRNYSYEKLLWTTSRVLKVLSVCPSNKPAI K L L S R V 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 2 1 0 0 0 0 7 0 875.4865 P14923;A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0;A0A2R8Y6G0 P14923 327 333 JUP;CTNNB1 Junction plakoglobin;Catenin beta-1 no no 2 0.020057 60.788 By MS/MS By MS/MS 1 1 0.90387 0.89954 13.027 2 Median 0.84226 0.82038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96999 0.98634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16081000 8191500 7889800 3094600 1688700 1406000 0 0 0 12987000 6502800 6483900 0 0 0 0 0 0 0 0 0 21605 2013;368 22528 114048;114049 115068;115069 115069 2 LLYDLADQLHAAVGASR VVSGGRGLKSGENFKLLYDLADQLHAAVGA YDLADQLHAAVGASRAAVDAGFVPNDMQVG K L L S R A 4 1 0 2 0 1 0 1 1 0 4 0 0 0 0 1 0 0 1 1 0 0 17 0 1811.953 P13804;H0YL12;H0YK49;H0YNX6 P13804 233 249 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2;3 1.7233E-12 129.62 By MS/MS By MS/MS 2 1 1.5496 1.2878 10.143 3 Plateau 1.1567 1.0812 1.3897 2 2 Median 1.5496 1.2878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 329020000 100020000 229000000 19569000 8879200 10690000 309450000 91137000 218310000 0 0 0 0 0 0 0 0 0 0 0 0 21606 1996 22529 114050;114051;114052 115070;115071;115072 115072 3 LLYDTFSAFGVILQTPK ANIFIGNLDPEIDEKLLYDTFSAFGVILQT YDTFSAFGVILQTPKIMRDPDTGNSKGYAF K L L P K I 1 0 0 1 0 1 0 1 0 1 3 1 0 2 1 1 2 0 1 1 0 0 17 0 1912.0346 Q15427;Q5SZ64 Q15427 115 131 SF3B4 Splicing factor 3B subunit 4 yes no 2 0.00081404 38.634 By matching By MS/MS By matching 1 1 1 0.80408 0.82608 8.3694 3 Median NaN NaN NaN 0 0 Median 0.91076 0.82608 NaN 1 0 Median 0.80408 0.79521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76892 0.93338 NaN 1 0 Median NaN NaN NaN 0 0 Median 4033200 2177400 1855800 0 0 0 278590 138870 139720 3643200 1982800 1660400 0 0 0 111410 55710 55700 0 0 0 21607 2952 22530 114053;114054;114055 115073 115073 1 LLYEANLPENFR EQIQCMQDMGNTKARLLYEANLPENFRRPQ KARLLYEANLPENFRRPQTDQAVEFFIRDK R L L F R R 1 1 2 0 0 0 2 0 0 0 3 0 0 1 1 0 0 0 1 0 0 0 12 0 1477.7565 Q8IYB5;A0A087X1X9 Q8IYB5 96 107 SMAP1 Stromal membrane-associated protein 1 yes no 2 6.0608E-07 118.18 By MS/MS By MS/MS 1 2 1.2926 1.2884 55.373 3 Plateau 0.59153 0.57993 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85151 0.84203 72.147 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20795000 10194000 10601000 5193000 3180300 2012800 0 0 0 15602000 7013600 8588500 0 0 0 0 0 0 0 0 0 21608 3341 22531 114056;114057;114058 115074;115075;115076 115075 3 LLYGMALVR KLLDVTGGLGTDELRLLYGMALVRFVNLIS GTDELRLLYGMALVRFVNLISERKTKFAKV R L L V R F 1 1 0 0 0 0 0 1 0 0 3 0 1 0 0 0 0 0 1 1 0 0 9 0 1034.5947 Q9Y4W2 Q9Y4W2 113 121 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.0044068 60.788 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 3 1.4396 1.302 26.413 7 Median 2.5185 2.5109 NaN 1 0 Median 1.5448 1.3675 NaN 1 0 Median 1.089 1.1673 NaN 1 0 Median 1.5489 1.302 NaN 1 0 Median 1.2355 1.2656 8.3228 3 0 Median NaN NaN NaN 0 0 Median 11251000 5298100 5953000 747130 241500 505630 1234000 476730 757240 3751900 1857300 1894600 287660 112020 175640 5230500 2610500 2619900 0 0 0 21609 4448 22532 114059;114060;114061;114062;114063;114064;114065 115077;115078;115079 115079 3 LLYNNVSNFGR VGDRCYDEKMYDAAKLLYNNVSNFGRLAST DAAKLLYNNVSNFGRLASTLVHLGEYQAAV K L L G R L 0 1 3 0 0 0 0 1 0 0 2 0 0 1 0 1 0 0 1 1 0 0 11 0 1295.6622 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1220 1230 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 3.1617E-10 178.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 4 1 2 1 1.2507 1.1691 22.604 16 Median 1.2906 1.2358 7.948 5 0 Median 1.3554 1.1406 20.137 3 0 Median 0.91939 0.98501 9.8269 4 0 Median 1.3318 1.1771 NaN 1 0 Median 1.192 1.2136 5.7827 2 0 Median 0.6639 0.57291 NaN 1 0 Median 798530000 353870000 444670000 439700000 189020000 250690000 166740000 69043000 97693000 137240000 70557000 66681000 16941000 7099300 9841500 37128000 17717000 19410000 786030 432210 353810 21610 44 22533 114066;114067;114068;114069;114070;114071;114072;114073;114074;114075;114076;114077;114078;114079;114080;114081 115080;115081;115082;115083;115084;115085;115086;115087;115088;115089;115090;115091;115092;115093;115094;115095;115096;115097;115098;115099;115100;115101;115102;115103;115104 115090 24 LLYNRPGTVSSLK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS K L L L K K 0 1 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 1 1 0 0 13 1 1446.8195 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 112 124 DEK Protein DEK yes no 2;3 1.1342E-21 199.68 By MS/MS By MS/MS By MS/MS By MS/MS 9 12 1 6 0.9475 0.91393 31.435 28 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84365 0.89469 15.974 9 0 Median 1.0533 0.95098 18.441 12 2 Median 0.22473 0.22767 NaN 1 1 Median 1.0425 0.91685 15.363 6 0 Median 2078300000 1109400000 968920000 0 0 0 0 0 0 941440000 509030000 432410000 1053000000 540010000 512960000 55302000 45998000 9303600 28592000 14351000 14241000 21611 1166 22534 114082;114083;114084;114085;114086;114087;114088;114089;114090;114091;114092;114093;114094;114095;114096;114097;114098;114099;114100;114101;114102;114103;114104;114105;114106;114107;114108;114109 115105;115106;115107;115108;115109;115110;115111;115112;115113;115114;115115;115116;115117;115118;115119;115120;115121;115122;115123;115124;115125;115126;115127;115128;115129;115130;115131;115132;115133;115134;115135;115136;115137;115138;115139;115140;115141;115142;115143 115125 39 LLYNRPGTVSSLKK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV K L L K K N 0 1 1 0 0 0 0 1 0 0 3 2 0 0 1 2 1 0 1 1 0 0 14 2 1574.9144 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 112 125 DEK Protein DEK yes no 2;3;4 1.1982E-05 85.457 By MS/MS By MS/MS By MS/MS By MS/MS 7 11 4 4 1.0115 0.99316 16.375 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81446 0.96547 19.033 6 0 Median 1.2133 1.1375 11.56 7 0 Median 0.8213 0.94836 0.95699 2 0 Median 1.0469 0.98872 3.4689 3 0 Plateau 495990000 176780000 319210000 0 0 0 0 0 0 131500000 50506000 80998000 271970000 87459000 184510000 34826000 14185000 20641000 57692000 24630000 33063000 21612 1166 22535 114110;114111;114112;114113;114114;114115;114116;114117;114118;114119;114120;114121;114122;114123;114124;114125;114126;114127;114128;114129;114130;114131;114132;114133;114134;114135 115144;115145;115146;115147;115148;115149;115150;115151;115152;115153;115154;115155;115156;115157;115158;115159;115160;115161;115162;115163;115164;115165;115166;115167;115168;115169;115170;115171;115172 115167 29 LLYPLGGQTNLR ISHEDGTLWRRQTPKLLYPLGGQTNLRIPQ TPKLLYPLGGQTNLRIPQGTVGQVMLDDRA K L L L R I 0 1 1 0 0 1 0 2 0 0 4 0 0 0 1 0 1 0 1 0 0 0 12 0 1343.7561 Q5SRE5 Q5SRE5 501 512 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.00044042 78.655 By MS/MS 3 0.81712 0.88984 19.06 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81712 0.88984 19.06 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15084000 8224600 6859200 0 0 0 0 0 0 15084000 8224600 6859200 0 0 0 0 0 0 0 0 0 21613 3074 22536 114136;114137;114138 115173;115174;115175;115176;115177;115178 115175 6 LLYPPETGLFLVR MPWFHGKITREQAERLLYPPETGLFLVRES ERLLYPPETGLFLVRESTNYPGDYTLCVSC R L L V R E 0 1 0 0 0 0 1 1 0 0 4 0 0 1 2 0 1 0 1 1 0 0 13 0 1516.8654 P41240;H3BUM9;H3BU69 P41240 95 107 CSK Tyrosine-protein kinase CSK yes no 2 0.00095942 61.65 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.95121 0.84753 12.032 6 Median 0.90236 0.90016 11.242 2 0 Median 0.93282 0.81164 NaN 1 0 Median 1.1007 1.0992 NaN 1 0 Median 0.97876 0.864 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93281 0.82485 NaN 1 0 Median 12110000 6022400 6087700 4241400 2299800 1941600 1373600 656420 717130 6313000 2971000 3342000 134420 70660 63764 0 0 0 47727 24560 23167 21614 2300 22537 114139;114140;114141;114142;114143;114144 115179;115180;115181;115182;115183;115184;115185 115183 7 LLYSNPTVK QKELLSNWYHFLVTRLLYSNPTVKPIDLHY HFLVTRLLYSNPTVKPIDLHYYAQSSLDLF R L L V K P 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 1 0 1 1 0 0 9 0 1033.5808 Q9BW27;J3KT10;J3QL54;J3QLD4;J3QLV0;J3KTC7 Q9BW27 312 320 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.0073226 67.993 By MS/MS By MS/MS 1 1 0.94245 0.88711 0.78039 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8518 0.88222 NaN 1 1 Median 1.0428 0.89201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8247300 4444400 3802800 0 0 0 0 0 0 6812700 3720900 3091800 1434600 723590 710990 0 0 0 0 0 0 21615 3861 22538 114145;114146 115186;115187;115188 115187 3 LLYTFPGWK SEQGSLQLWNVKSNKLLYTFPGWKVGVTAL NVKSNKLLYTFPGWKVGVTALQQAPAVDVV K L L W K V 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 0 1 1 1 0 0 0 9 0 1123.6066 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 183 191 WDR36 WD repeat-containing protein 36 yes no 2 0.0034481 65.038 By MS/MS By matching 1 1 1.278 1.2784 19.771 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0354 1.1116 NaN 1 0 Median 1.5773 1.4702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6558900 3174200 3384600 0 0 0 0 0 0 6448500 3122900 3325600 110320 51339 58983 0 0 0 0 0 0 21616 188 22539 114147;114148 115189;115190 115190 2 LLYTGDFSR VLGAAMFMIEIAGVKLLYTGDFSRQEDRHL EIAGVKLLYTGDFSRQEDRHLMAAEIPNIK K L L S R Q 0 1 0 1 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 0 0 0 9 0 1070.5397 Q9UKF6;G5E9W3 Q9UKF6 174 182 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.0040235 61.962 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0399 0.96851 15.898 4 Median NaN NaN NaN 0 0 Median 1.094 0.94334 NaN 1 0 Median 0.98853 0.99436 NaN 1 0 Median 1.2362 1.065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89822 0.73905 NaN 1 0 Median 43829000 21748000 22082000 0 0 0 1395300 604080 791270 40447000 20222000 20225000 1535400 684860 850530 0 0 0 451440 236630 214800 21617 4309 22540 114149;114150;114151;114152 115191;115192 115191 2 LLYVTPEK TNIYLQLSKKDPIIKLLYVTPEKICASNRL KKDPIIKLLYVTPEKICASNRLISTLENLY K L L E K I 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 8 0 961.54843 H0YNU5;A0A3B3IT82;P54132 H0YNU5 762 769 BLM Bloom syndrome protein yes no 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 1 1.0701 0.90624 7.5173 7 Median 0.84573 0.80704 NaN 1 0 Median 0.98908 0.82734 NaN 1 0 Median 0.85034 0.84085 NaN 1 0 Median 1.0832 0.93689 3.3311 3 0 Median NaN NaN NaN 0 0 Median 1.1286 0.95939 NaN 1 0 Median 74377000 38447000 35930000 5950900 3111800 2839100 14701000 7379200 7321400 39302000 21089000 18213000 13628000 6472200 7155600 0 0 0 795160 394500 400660 21618 434 22541 114153;114154;114155;114156;114157;114158;114159 115193;115194;115195;115196;115197;115198;115199;115200 115195 8 LMADELER AGGDGGKSKKFTLKRLMADELERFTSMRIK KKFTLKRLMADELERFTSMRIKKEKEKPNS R L M E R F 1 1 0 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 975.46953 A0A0G2JH68;O60610;A0A2R8Y5N1;B4E2I7 A0A0G2JH68 44 51 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0061436 72.485 By MS/MS By MS/MS 1 1 1.1025 0.98301 21.509 2 Median 0.89808 0.84432 NaN 1 0 Median 1.3534 1.1445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13744000 6539200 7205000 9264000 4789400 4474700 4480100 1749800 2730300 0 0 0 0 0 0 0 0 0 0 0 0 21619 274 22542 114160;114161 115201;115202;115203 115201 3 LMADNYEDDHFK RLVQQLKQQTQNRMKLMADNYEDDHFKSSH RMKLMADNYEDDHFKSSHSNQTNHKPSPDQ K L M F K S 1 0 1 3 0 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 12 0 1496.6242 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPD6;A0A0U1RQN0 X6RLX0 986 997 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2;3 0.00017238 76.228 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.1256 0.9813 17.426 5 Median 0.99945 0.9813 NaN 1 1 Median 0.9821 0.85486 NaN 1 0 Median 1.242 1.347 NaN 1 0 Median 1.2395 1.0546 11.221 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16282000 7008400 9273600 4032400 1689800 2342600 1430500 667480 762990 4521800 1847200 2674600 6297300 2804000 3493300 0 0 0 0 0 0 21620 3311 22543 114162;114163;114164;114165;114166 115204;115205;115206;115207;115208 115207 4 LMAEDEEGYR QKKENERIEKERMRRLMAEDEEGYRKLIDQ ERMRRLMAEDEEGYRKLIDQKKDKRLAYLL R L M Y R K 1 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1211.5129 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8YDA1;P51531;F6VDE0;A0A0U1RQZ9 P51532 530 539 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00036818 111.95 By MS/MS By MS/MS 1 1 1.0868 1.0662 5.1543 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0084 1.1057 NaN 1 0 Median 1.1712 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9262700 4214200 5048500 0 0 0 0 0 0 7312600 3417200 3895500 1950100 797000 1153000 0 0 0 0 0 0 21621 366;2433 22544 114167;114168 115209;115210;115211;115212 115209 4 LMAEDEEGYRK QKKENERIEKERMRRLMAEDEEGYRKLIDQ RMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ R L M R K L 1 1 0 1 0 0 3 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 11 1 1339.6078 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8YDA1;P51531;F6VDE0;A0A0U1RQZ9 P51532 530 540 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 4.4877E-05 94.616 By MS/MS By MS/MS By matching 3 3 1 1.054 1.2055 18.262 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89779 1.0761 8.0219 3 1 Median 1.4273 1.3835 26.076 3 0 Plateau 1.2575 1.4277 NaN 1 0 Median NaN NaN NaN 0 0 Median 22220000 10512000 11708000 0 0 0 0 0 0 16894000 8084100 8810300 3544800 1508100 2036600 1780400 919450 860970 0 0 0 21622 366;2433 22545 114169;114170;114171;114172;114173;114174;114175 115213;115214;115215;115216;115217;115218;115219;115220 115214 8 LMAEIQDLK RDYELYKYTCQELQRLMAEIQDLKSRGGKD CQELQRLMAEIQDLKSRGGKDVAIEIEERR R L M L K S 1 0 0 1 0 1 1 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1059.5634 Q13769;F8WCP5;C9JXG5;H7C441;C9JXU6;F5GZF3;C9JCL9 Q13769 65 73 THOC5 THO complex subunit 5 homolog yes no 2 0.00088636 92.439 By MS/MS By MS/MS 2 2 0.97543 0.90242 11.297 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88626 0.89086 11.806 2 1 Median 1.0774 0.93413 14.866 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58330000 28414000 29916000 0 0 0 0 0 0 52464000 25820000 26644000 5866000 2593800 3272200 0 0 0 0 0 0 21623 2837 22546;22547 114176;114177;114178;114179 115221;115222;115223;115224;115225 115221 1522 5 LMAFQPAPK VSCAAGVTISSVEKKLMAFQPAPKVIRCMT SSVEKKLMAFQPAPKVIRCMTNTPVVVQEG K L M P K V 2 0 0 0 0 1 0 0 0 0 1 1 1 1 2 0 0 0 0 0 0 0 9 0 1001.5368 Q96C36;A0A087WZR9;A0A087WX69;A0A087WZF0 Q96C36 108 116 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 2 0.0022035 73.616 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0593 0.94982 15.261 4 Median 0.87412 0.79343 NaN 1 0 Median 1.0311 0.86612 NaN 1 0 Median 1.0884 1.0416 NaN 1 0 Median 1.3076 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46125000 23269000 22856000 27307000 14474000 12833000 6655300 3247900 3407400 4113900 1979400 2134500 8049100 3568200 4480900 0 0 0 0 0 0 21624 3615 22548 114180;114181;114182;114183 115226;115227;115228;115229;115230 115230 5 LMALGPIR AADAELAWVAETKRKLMALGPIRLEQDQTT VAETKRKLMALGPIRLEQDQTTAQLQVQKA K L M I R L 1 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 0 0 0 0 8 0 869.51569 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5798 5805 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.013618 52.683 By matching By MS/MS By matching By matching 1 1 1 1 0.96012 0.89489 12.248 4 Median 0.76917 0.77777 NaN 1 0 Median 1.0066 0.85125 NaN 1 0 Median 0.91582 1.032 NaN 1 0 Median 1.0851 0.94077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6568600 3449400 3119200 3092500 1642700 1449700 2209800 1135400 1074400 1138200 603800 534400 128090 67487 60603 0 0 0 0 0 0 21625 1220 22549 114184;114185;114186;114187 115231 115231 1 LMALLGQALK AQALAGEVSVVPPSRLMALLGQALKWQQHQ VPPSRLMALLGQALKWQQHQGLLPPGMTID R L M L K W 2 0 0 0 0 1 0 1 0 0 4 1 1 0 0 0 0 0 0 0 0 0 10 0 1056.6365 Q2TAY7 Q2TAY7 161 170 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.00040547 77.058 By matching By MS/MS By MS/MS By MS/MS By matching 2 6 6 6 2 1.15 1.1039 24.448 22 Median 1.7079 1.6786 0.84482 2 0 Median NaN NaN NaN 0 0 Median 1.15 1.1549 22.581 6 1 Median 1.2539 1.1048 27.582 6 0 Median 1.0444 1.0477 10.025 6 0 Median 1.0871 0.90653 27.815 2 0 Median 141840000 64376000 77467000 4297400 1548800 2748600 0 0 0 84141000 38731000 45410000 37569000 16363000 21206000 15401000 7507500 7893600 434600 226420 208180 21626 3005 22550;22551 114188;114189;114190;114191;114192;114193;114194;114195;114196;114197;114198;114199;114200;114201;114202;114203;114204;114205;114206;114207;114208;114209 115232;115233;115234;115235;115236;115237;115238;115239;115240;115241;115242;115243 115235 1647 12 LMALYVASHYK TLFCYHKASEVFLQRLMALYVASHYKNSPN FLQRLMALYVASHYKNSPNDLQMLSDAPAH R L M Y K N 2 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 2 1 0 0 11 0 1294.6744 Q9H0A0;A0A087WV29 Q9H0A0 529 539 NAT10 N-acetyltransferase 10 yes no 2;3 0.00017515 78.934 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 3 2 1.299 1.2154 15.709 10 Median 1.3406 1.3515 NaN 1 0 Median 1.4592 1.2623 NaN 1 0 Median 1.1009 1.1801 19.977 3 0 Median 1.4371 1.2309 5.5956 3 0 Plateau 1.0292 1.076 28.642 2 0 Median NaN NaN NaN 0 0 Median 39278000 18213000 21065000 1353600 575550 778030 1356300 531800 824450 24072000 11598000 12474000 6181300 2630600 3550700 6314900 2877300 3437600 0 0 0 21627 3921 22552;22553 114210;114211;114212;114213;114214;114215;114216;114217;114218;114219 115244;115245;115246;115247;115248;115249;115250;115251;115252;115253 115251 1850 9 LMAMQRPGPYDR SSRAEVRTHYDPPRKLMAMQRPGPYDRPGA PRKLMAMQRPGPYDRPGAGRGYNSIGRGAG K L M D R P 1 2 0 1 0 1 0 1 0 0 1 0 2 0 2 0 0 0 1 0 0 0 12 1 1433.6908 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;E7EN40;H0YBD7;P55795 P31943 201 212 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 0.00015258 77.593 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 0.84551 0.85425 26.654 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74275 0.80419 NaN 1 0 Median 0.80333 0.72794 21.857 2 0 Median 0.79195 0.85892 8.192 3 0 Median 1.4029 1.2418 35.585 2 0 Median 52585000 28534000 24052000 0 0 0 0 0 0 13129000 7939800 5189500 12541000 6166200 6375200 23807000 13196000 10611000 3107800 1232000 1875800 21628 1136;2502 22554 114220;114221;114222;114223;114224;114225;114226;114227 115254;115255;115256;115257;115258;115259;115260;115261;115262 115254 9 LMAQSTMEPEVLSRRTSDPR L M P R 1 3 0 1 0 1 2 0 0 0 2 0 2 0 2 3 2 0 0 1 0 0 20 2 2303.1362 REV__Q86UU5 yes no 3;4 0.020483 16.615 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 11 6 11 8 0.68812 0.79865 14.206 48 Median 0.61955 0.75454 26.133 7 0 Median 0.92709 1.055 15.416 5 0 Median 0.65836 0.74051 8.9331 11 0 Median 0.81567 0.80195 6.2988 6 0 Median 0.65667 0.79206 6.7502 11 0 Median 0.81803 0.85465 4.5419 8 0 Median 4477800000 2608700000 1869100000 337400000 203740000 133660000 309980000 165870000 144110000 703500000 409820000 293680000 254850000 135950000 118890000 2715000000 1609600000 1105500000 157060000 83737000 73327000 + 21629 4548 22555 114228;114229;114230;114231;114232;114233;114234;114235;114236;114237;114238;114239;114240;114241;114242;114243;114244;114245;114246;114247;114248;114249;114250;114251;114252;114253;114254;114255;114256;114257;114258;114259;114260;114261;114262;114263;114264;114265;114266;114267;114268;114269;114270;114271;114272;114273;114274;114275 115263;115264;115265;115266;115267;115268;115269;115270;115271;115272;115273;115274;115275;115276 115271 14 LMATLSNTNPSFVR MFRTVGQLYKESLSRLMATLSNTNPSFVRC RLMATLSNTNPSFVRCIVPNHEKRAGKLEP R L M V R C 1 1 2 0 0 0 0 0 0 0 2 0 1 1 1 2 2 0 0 1 0 0 14 0 1549.7923 Q7Z406 Q7Z406 681 694 MYH14 Myosin-14 no no 2 1.4193E-05 150.61 By MS/MS By MS/MS 1 1 0.91322 0.81382 16.665 2 Median 0.77064 0.72335 NaN 1 0 Median 1.0822 0.91559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14319000 6185000 8134200 11621000 5159400 6461700 2698100 1025600 1672400 0 0 0 0 0 0 0 0 0 0 0 0 21630 3242 22556 114276;114277 115277;115278;115279 115278 3 LMATQMTAAGLGPGVEQTK VESAGTEAQIKHLARLMATQMTAAGLGPGV QMTAAGLGPGVEQTKQCKEEPKEEKVVKTE R L M T K Q 3 0 0 0 0 2 1 3 0 0 2 1 2 0 1 0 3 0 0 1 0 0 19 0 1902.9543 Q92797;A0A087WUE9;M0R3C7 Q92797 452 470 SYMPK Symplekin yes no 2;3 3.5475E-18 147.18 By MS/MS By MS/MS By matching 3 1 1 0.76886 0.82052 15.173 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78145 0.83136 13.03 3 0 Plateau 1.1131 0.93753 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74986 0.66929 NaN 1 0 Median 61118000 33171000 27947000 0 0 0 0 0 0 58431000 31819000 26612000 1554600 806810 747800 0 0 0 1133000 545120 587910 21631 3558 22557;22558 114278;114279;114280;114281;114282 115280;115281;115282;115283;115284;115285 115282 1773 6 LMDEAVLALR IVKGLAGHLKSNSPRLMDEAVLALRNLARQ SNSPRLMDEAVLALRNLARQCSDSSAMESL R L M L R N 2 1 0 1 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 10 0 1129.6165 Q92616 Q92616 314 323 GCN1L1 Translational activator GCN1 yes yes 2 0.0005985 114.5 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1.199 1.038 16.811 8 Median 1.1903 1.1584 22.309 2 0 Median 1.2178 1.034 18.346 4 0 Median 1.0194 1.132 NaN 1 0 Median 1.1877 1.0285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26610000 12350000 14260000 14745000 6898200 7846900 9530100 4420700 5109400 2200100 973170 1226900 134920 57904 77017 0 0 0 0 0 0 21632 3544 22559 114283;114284;114285;114286;114287;114288;114289;114290 115286;115287;115288;115289;115290 115286 5 LMDEFKIGELFSK LDLLIKLLQTFRSSRLMDEFKIGELFSKFY SRLMDEFKIGELFSKFYGELALKKKIPDTV R L M S K F 0 0 0 1 0 0 2 1 0 1 2 2 1 2 0 1 0 0 0 0 0 0 13 1 1555.7956 P78527;F5GX40 P78527 143 155 PRKDC DNA-dependent protein kinase catalytic subunit yes no 3 0.036011 19.839 By MS/MS 1 1.0834 1.1727 NaN 1 Median 1.0834 1.1727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2862900 1274700 1588200 2862900 1274700 1588200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21633 2647 22560 114291 115291 115291 1 LMDEVAGIVAAR DCTLHGFVHGGVTMKLMDEVAGIVAARHCK TMKLMDEVAGIVAARHCKTNIVTASVDAIN K L M A R H 3 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 2 0 0 12 0 1243.6595 O00154;K7EKP8 O00154 253 264 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 2 0.00055381 75.378 By MS/MS By MS/MS By MS/MS 2 3 1 1.1709 1.0546 10.896 6 Median 1.2113 1.211 7.5197 2 0 Median 1.19 1.0365 6.9018 3 0 Median 0.91646 0.99585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93819000 44303000 49516000 53532000 25456000 28075000 32574000 14918000 17656000 7712800 3928300 3784500 0 0 0 0 0 0 0 0 0 21634 1443 22561;22562 114292;114293;114294;114295;114296;114297 115292;115293;115294;115295;115296;115297 115293 466 6 LMDEVIK DCMSRAVTRHKEVKKLMDEVIKSMKPK___ TRHKEVKKLMDEVIKSMKPK__________ K L M I K S 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 7 0 846.45209 Q96B26;H7C581 Q96B26 265 271 EXOSC8 Exosome complex component RRP43 yes no 2 0.031276 49.358 By matching By matching By matching By MS/MS 1 1 1 1 1.2321 1.0708 7.6806 4 Median 1.2413 1.2201 NaN 1 0 Median 1.223 1.0364 NaN 1 0 Median 1.0843 1.0376 NaN 1 0 Median 1.3094 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9245800 3893500 5352300 2029400 877730 1151700 1174500 542670 631800 3955300 1579800 2375500 2086600 893310 1193300 0 0 0 0 0 0 21635 3604 22563 114298;114299;114300;114301 115298;115299 115299 2 LMDGEEPLPMLPSYK IPNFDVREIVNNIRRLMDGEEPLPMLPSYK LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R L M Y K N 0 0 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 15 0 1718.8259 P11388 P11388 879 893 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00034031 65.395 By matching By MS/MS 1 2 0.7169 0.75164 9.1642 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88694 0.80234 NaN 1 0 Median 0.67695 0.70939 8.1798 2 0 Median NaN NaN NaN 0 0 Median 24076000 14190000 9886200 0 0 0 0 0 0 0 0 0 529510 267530 261980 23546000 13922000 9624200 0 0 0 21636 1963 22564;22565 114302;114303;114304 115300;115301;115302;115303 115303 742 4 LMDHVGTEPSIK EGLETTALFVAATYKLMDHVGTEPSIKEDQ TYKLMDHVGTEPSIKEDQVIQLMNAIFSKK K L M I K E 0 0 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 12 0 1325.6649 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 218 229 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 3 0.0015777 40.025 By MS/MS By matching 2 1 1.0774 0.95802 22.095 3 Median NaN NaN NaN 0 0 Median 1.1562 1.0197 8.8315 2 0 Median NaN NaN NaN 0 0 Median 0.68802 0.70643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16168000 7288400 8879300 0 0 0 15457000 6930300 8526900 0 0 0 710530 358140 352390 0 0 0 0 0 0 21637 1854 22566 114305;114306;114307 115304;115305 115304 2 LMDHVGTEPSIKEDQVIQLMNAIFSK EGLETTALFVAATYKLMDHVGTEPSIKEDQ KEDQVIQLMNAIFSKKNFESLSEAFSVASA K L M S K K 1 0 1 2 0 2 2 1 1 3 2 2 2 1 1 2 1 0 0 2 0 0 26 1 2942.4882 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 218 243 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 4 3.1275E-09 49.25 By MS/MS By matching 1 1 0.90386 0.9082 1.459 2 Median NaN NaN NaN 0 0 Median 0.96271 0.91762 NaN 1 0 Median 0.84861 0.89888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6463200 2927800 3535400 0 0 0 6135600 2754200 3381500 327510 173630 153880 0 0 0 0 0 0 0 0 0 21638 1854 22567 114308;114309 115306 115306 1 LMDKEQQVADLQLK AHGRLKEQRQLSSEKLMDKEQQVADLQLKL KLMDKEQQVADLQLKLSRLEEQLKEKVTNS K L M L K L 1 0 0 2 0 3 1 0 0 0 3 2 1 0 0 0 0 0 0 1 0 0 14 1 1657.8709 Q15075 Q15075 448 461 EEA1 Early endosome antigen 1 yes yes 2;3 1.0559E-06 113.61 By MS/MS By matching 2 1 1.2137 1.1676 7.1561 3 Median 1.1574 1.1061 7.648 2 0 Median 1.2338 1.1997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36067000 17403000 18664000 34574000 16760000 17814000 1493100 643290 849850 0 0 0 0 0 0 0 0 0 0 0 0 21639 2926 22568 114310;114311;114312 115307;115308;115309 115309 3 LMDLLADSR QVQQIILVSPMGVSRLMDLLADSREVIRND PMGVSRLMDLLADSREVIRNDGVLLLQALT R L M S R E 1 1 0 2 0 0 0 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 9 0 1032.5274 O60763 O60763 171 179 USO1 General vesicular transport factor p115 yes yes 2 0.0018623 76.827 By MS/MS By MS/MS 1 2 1.4225 1.2011 7.224 3 Median 1.1979 1.1555 NaN 1 0 Median 1.4483 1.2634 7.1576 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13683000 6105100 7578400 8449500 3949200 4500300 5234000 2155800 3078100 0 0 0 0 0 0 0 0 0 0 0 0 21640 1630 22569 114313;114314;114315 115310;115311;115312 115311 3 LMDLLGEGLKR EDKKKFKTRSGETVRLMDLLGEGLKRSMDK ETVRLMDLLGEGLKRSMDKLKEKERDKVLT R L M K R S 0 1 0 1 0 0 1 2 0 0 4 1 1 0 0 0 0 0 0 0 0 0 11 1 1243.6958 P54136 P54136 462 472 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2;3 3.5107E-05 94.692 By MS/MS By matching 2 1 1.171 1.1748 21.673 3 Median 0.99878 1.0022 22.465 2 1 Median 1.4083 1.2938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20443000 9374900 11068000 18563000 8598800 9964600 1879600 776050 1103600 0 0 0 0 0 0 0 0 0 0 0 0 21641 2480 22570 114316;114317;114318 115313;115314;115315 115313 3 LMDLLPK GFALVGVGSEASSKKLMDLLPKRELHGQNP GSEASSKKLMDLLPKRELHGQNPVVTPCNK K L M P K R 0 0 0 1 0 0 0 0 0 0 3 1 1 0 1 0 0 0 0 0 0 0 7 0 828.47791 F8WJN3;Q16630 F8WJN3 140 146 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 0.070143 46.37 By MS/MS 1 0.63393 0.6376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63393 0.6376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15465000 11275000 4190100 0 0 0 0 0 0 15465000 11275000 4190100 0 0 0 0 0 0 0 0 0 21642 1099 22571 114319 115316 115316 1 LMDLQLSDSNFR GGEHVYFAKFLTSEKLMDLQLSDSNFRRHI SEKLMDLQLSDSNFRRHILLQYLILFQYLK K L M F R R 0 1 1 2 0 1 0 0 0 0 3 0 1 1 0 2 0 0 0 0 0 0 12 0 1437.6922 A0A087WWS1;Q96FV9;R4GMN4;A0A087WY84 A0A087WWS1 307 318 THOC1 THO complex subunit 1 yes no 2 0.00011369 154.56 By MS/MS By MS/MS 2 1 0.91981 0.93004 12.511 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86375 0.87672 8.3483 2 1 Median 1.2319 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35784000 18451000 17334000 0 0 0 0 0 0 34172000 17665000 16507000 1612200 785370 826840 0 0 0 0 0 0 21643 62 22572;22573 114320;114321;114322 115317;115318;115319 115317 26 3 LMDLQLSDSNFRR GGEHVYFAKFLTSEKLMDLQLSDSNFRRHI EKLMDLQLSDSNFRRHILLQYLILFQYLKG K L M R R H 0 2 1 2 0 1 0 0 0 0 3 0 1 1 0 2 0 0 0 0 0 0 13 1 1593.7933 A0A087WWS1;Q96FV9;R4GMN4;A0A087WY84 A0A087WWS1 307 319 THOC1 THO complex subunit 1 yes no 3 0.0062346 27.681 By MS/MS 1 1.4622 1.6317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4622 1.6317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8009700 3645600 4364100 0 0 0 0 0 0 8009700 3645600 4364100 0 0 0 0 0 0 0 0 0 21644 62 22574 114323 115320 115320 1 LMDNFLIR YTPVASRQSLKQGSRLMDNFLIREMSGSTS SLKQGSRLMDNFLIREMSGSTSELLIKENK R L M I R E 0 1 1 1 0 0 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 0 8 0 1020.5426 Q9NS91;F8WE49 Q9NS91 132 139 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 2 0.019561 47.067 By MS/MS By matching 1 1 1.2715 1.2252 30.771 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4235 1.523 NaN 1 0 Median 1.1357 0.98563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2710400 1107100 1603300 0 0 0 0 0 0 2551200 1044200 1507000 159180 62919 96266 0 0 0 0 0 0 21645 4099 22575 114324;114325 115321;115322 115322 2 LMDQLEALKK KIDSKTPECRKFLSKLMDQLEALKKQLGDN KFLSKLMDQLEALKKQLGDNEAITQEIVGC K L M K K Q 1 0 0 1 0 1 1 0 0 0 3 2 1 0 0 0 0 0 0 0 0 0 10 1 1187.6584 Q9NP79;A0A087WY55 Q9NP79 63 72 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 3 0.0014672 62.303 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21818000 0 21818000 10264000 0 10264000 2865200 0 2865200 4998500 0 4998500 1017500 0 1017500 2672600 0 2672600 0 0 0 21646 76 22576 114326;114327;114328;114329;114330 115323;115324;115325;115326;115327 115324 5 LMDQNLK ELAESRCREMDEQIRLMDQNLKCLSAAEEK REMDEQIRLMDQNLKCLSAAEEKAETRAEF R L M L K C 0 0 1 1 0 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 860.44259 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6 A0A087WWU8 163 169 TPM3 no no 2 0.015366 71.715 By MS/MS By matching 2 1 1.1568 0.97217 16.536 3 Plateau NaN NaN NaN 0 0 Median 1.1194 0.94418 4.1312 2 0 Median 0.72961 0.71223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6823900 2952000 3871900 0 0 0 5729200 2390800 3338400 1094700 561180 533520 0 0 0 0 0 0 0 0 0 21647 63;1303 22577 114331;114332;114333 115328;115329 115329 2 LMDSVALK CGNCGEISDKWQYIRLMDSVALKGGRGSAS DKWQYIRLMDSVALKGGRGSASMVQKCKLC R L M L K G 1 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 8 0 875.47864 Q9NWV4 Q9NWV4 48 55 C1orf123 UPF0587 protein C1orf123 yes yes 2 0.017569 48.561 By MS/MS By matching 2 1 0.90597 0.8433 31.727 3 Plateau 0.67704 0.63392 40.36 2 0 Median NaN NaN NaN 0 0 Median 0.842 0.80594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9930600 5359000 4571500 8507700 4455800 4052000 0 0 0 1422800 903250 519590 0 0 0 0 0 0 0 0 0 21648 4152 22578 114334;114335;114336 115330 115330 1 LMDVCATSR LLRRLEAFEHPNVVRLMDVCATSRTDREIK HPNVVRLMDVCATSRTDREIKVTLVFEHVD R L M S R T 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 9 0 1051.4791 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8 P11802 74 82 CDK4 Cyclin-dependent kinase 4 yes no 2 0.0018623 76.827 By MS/MS 1 1.0597 0.88329 NaN 1 Median NaN NaN NaN 0 0 Median 1.0597 0.88329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5065100 2384200 2680800 0 0 0 5065100 2384200 2680800 0 0 0 0 0 0 0 0 0 0 0 0 21649 1971 22579 114337 115331;115332 115331 2 LMDVGLIAIR SEHLKNPVIAQKIQKLMDVGLIAIR_____ QKIQKLMDVGLIAIR_______________ K L M I R - 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 0 0 0 1 0 0 10 0 1099.6424 P31948 P31948 534 543 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.00035707 105.57 By MS/MS By MS/MS By MS/MS By matching 4 7 2 2 1.1696 0.99355 29.178 14 Median 1.2644 1.221 3.8997 4 0 Median 1.0544 0.92991 16.889 7 0 Median 1.234 1.2995 NaN 1 0 Median 0.76882 0.6558 53.119 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 271970000 121810000 150150000 71252000 30420000 40832000 195100000 88956000 106150000 4107800 1746600 2361200 1505800 691290 814520 0 0 0 0 0 0 21650 2212 22580;22581 114338;114339;114340;114341;114342;114343;114344;114345;114346;114347;114348;114349;114350;114351;114352 115333;115334;115335;115336;115337;115338;115339;115340;115341;115342;115343;115344 115344 957 12 LMDVMAK TILEQQRRYHEEKERLMDVMAKEMLTKKST RYHEEKERLMDVMAKEMLTKKSTLRDQINS R L M A K E 1 0 0 1 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 0 0 7 0 806.40303 Q12874 Q12874 18 24 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.028199 50.966 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1.5205 1.3599 6.8563 6 Median 1.243 1.1958 NaN 1 0 Median 1.5363 1.3343 5.5151 2 0 Median 1.4142 1.4378 NaN 1 0 Median 1.585 1.3702 3.8977 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11560000 4546400 7013800 3112400 1137800 1974600 3686000 1416600 2269400 3710500 1559700 2150800 1051400 432370 619020 0 0 0 0 0 0 21651 2767 22582 114353;114354;114355;114356;114357;114358 115345;115346;115347;115348 115345 4 LMEEDELPSWIIKDDAEVER DRRREEARNPKRKPRLMEEDELPSWIIKDD ELPSWIIKDDAEVERLTCEEEEEKMFGRGS R L M E R L 1 1 0 3 0 0 5 0 0 2 2 1 1 0 1 1 0 1 0 1 0 0 20 1 2416.1468 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6 P51532 1337 1356 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 5.4858E-06 47.397 By MS/MS 3 0.68302 0.81639 12.209 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68302 0.81639 12.209 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6479600 3503500 2976100 0 0 0 0 0 0 6479600 3503500 2976100 0 0 0 0 0 0 0 0 0 21652 366;2433 22583;22584 114359;114360;114361 115349;115350;115351 115350 172 3 LMEEIMSEK VDVCHDVEKDEKLIRLMEEIMSEKENKTIV DEKLIRLMEEIMSEKENKTIVFVETKRRCD R L M E K E 0 0 0 0 0 0 3 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 9 0 1108.5144 J3KTA4;P17844;J3QSF1 J3KTA4 332 340 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.00058525 111.95 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 2 3 3 1.4738 1.3674 19.235 15 Median 1.522 1.4449 NaN 1 0 Median 1.4915 1.263 11.723 2 0 Median 1.2404 1.2995 17.383 4 1 Median 1.4117 1.2058 10.657 2 0 Median 1.5455 1.5273 7.0962 3 1 Median 1.6564 1.3857 32.346 3 0 Median 112650000 47992000 64655000 7566600 3694400 3872200 16126000 6782300 9343700 63980000 27181000 36799000 8835500 3635800 5199700 11083000 4804100 6278700 5055600 1893900 3161700 21653 1334 22585 114362;114363;114364;114365;114366;114367;114368;114369;114370;114371;114372;114373;114374;114375;114376 115352;115353;115354;115355;115356;115357;115358;115359 115353 8 LMEEIMSEKENK VDVCHDVEKDEKLIRLMEEIMSEKENKTIV LIRLMEEIMSEKENKTIVFVETKRRCDELT R L M N K T 0 0 1 0 0 0 4 0 0 1 1 2 2 0 0 1 0 0 0 0 0 0 12 1 1479.6949 J3KTA4;P17844;J3QSF1 J3KTA4 332 343 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 1.4921E-05 157.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 5 5 1.2159 1.1624 26.95 19 Median 1.2806 1.1981 6.6521 2 0 Median 1.1223 1.05 NaN 1 0 Median 1.2753 1.4091 17.381 4 0 Median 1.7135 1.5264 5.7298 2 0 Median 1.1281 1.2487 42.628 5 0 Median 1.2098 1.0394 12.064 5 0 Median 234370000 104730000 129640000 35918000 14759000 21159000 5076300 2209300 2867000 75902000 33670000 42231000 1508100 529660 978460 90364000 42912000 47452000 25598000 10645000 14953000 21654 1334 22586;22587 114377;114378;114379;114380;114381;114382;114383;114384;114385;114386;114387;114388;114389;114390;114391;114392;114393;114394;114395 115360;115361;115362;115363;115364;115365;115366;115367;115368;115369;115370;115371;115372;115373;115374;115375;115376;115377;115378;115379;115380;115381 115360 440 22 LMEIYQEK AVARYQRQAAEVMGRLMEIYQEKLYRPPPV AAEVMGRLMEIYQEKLYRPPPVLDALGRVI R L M E K L 0 0 0 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 8 0 1052.5212 Q92616 Q92616 1201 1208 GCN1L1 Translational activator GCN1 yes yes 2 0.0054455 83.265 By MS/MS By MS/MS 1 1 1.2272 1.1375 2.0382 2 Median 1.1584 1.1212 NaN 1 1 Median 1.3001 1.154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13959000 5971400 7988000 10206000 4414400 5792000 3753000 1557000 2196000 0 0 0 0 0 0 0 0 0 0 0 0 21655 3544 22588 114396;114397 115382;115383 115383 2 LMELFPANK NAVAASLRKVSMDNRLMELFPANKQSVEHF VSMDNRLMELFPANKQSVEHFTKYFTEAGL R L M N K Q 1 0 1 0 0 0 1 0 0 0 2 1 1 1 1 0 0 0 0 0 0 0 9 0 1061.558 Q7L1Q6;C9IZ80 Q7L1Q6 215 223 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.0018414 77.058 By MS/MS By matching By MS/MS By matching 2 2 2 1 0.85989 0.84992 8.297 7 Median 0.84754 0.79551 0.23663 2 0 Median 1.0011 0.86924 3.1786 2 0 Median 0.81556 0.85105 7.7487 2 0 Median 1.2024 0.99647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39677000 20295000 19382000 21618000 11081000 10536000 11309000 5767700 5541600 6590900 3347600 3243400 159690 98806 60884 0 0 0 0 0 0 21656 3219 22589 114398;114399;114400;114401;114402;114403;114404 115384;115385;115386;115387;115388;115389;115390 115387 7 LMELHFK LLNKFTENDSEKVDRLMELHFKYLGAMQVA NDSEKVDRLMELHFKYLGAMQVADKKIEGE R L M F K Y 0 0 0 0 0 0 1 0 1 0 2 1 1 1 0 0 0 0 0 0 0 0 7 0 916.48406 Q8WYA6;A0A087WUB9 Q8WYA6 441 447 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.020057 60.788 By MS/MS By matching 1 1 1.0733 1.0009 0.33905 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98654 0.99846 NaN 1 0 Median 1.1676 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12665000 6405900 6259200 0 0 0 0 0 0 11696000 5924800 5771500 968850 481130 487720 0 0 0 0 0 0 21657 28 22590 114405;114406 115391;115392 115391 2 LMELHGEGSSSGK RKVKMLKKPKFELGKLMELHGEGSSSGKAT GKLMELHGEGSSSGKATGDETGAKVERADG K L M G K A 0 0 0 0 0 0 2 3 1 0 2 1 1 0 0 3 0 0 0 0 0 0 13 0 1330.6187 P61247;D6RG13;H0Y9Y4;D6RAT0;D6R9B6 P61247 228 240 RPS3A 40S ribosomal protein S3a yes no 2;3 4.4454E-07 123.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 4 2 1.1784 1.0818 17.032 18 Median 1.1462 1.0407 27.797 4 0 Median 1.184 0.99033 18.151 4 0 Median 1.2388 1.1945 1.885 2 0 Median 1.2424 1.0458 9.298 2 0 Median 1.1422 1.1687 7.8005 4 0 Median 1.3146 1.0729 2.0208 2 0 Median 214600000 94951000 119650000 51468000 23584000 27883000 115430000 50328000 65106000 6807100 2840600 3966500 10110000 4383800 5726600 22728000 10353000 12376000 8050400 3461800 4588600 21658 2553 22591 114407;114408;114409;114410;114411;114412;114413;114414;114415;114416;114417;114418;114419;114420;114421;114422;114423;114424 115393;115394;115395;115396;115397;115398;115399;115400;115401;115402;115403;115404;115405;115406;115407;115408;115409;115410;115411;115412;115413;115414;115415;115416;115417;115418 115394 26 LMELQEAVR EMARVLMERNQYKERLMELQEAVRWTEMIR NQYKERLMELQEAVRWTEMIRASRENPAMQ R L M V R W 1 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1087.5696 A0A087X2D8;O60271;E9PFH7;A0A087WYG2;Q9UPT6 A0A087X2D8 508 516 SPAG9;MAPK8IP3 C-Jun-amino-terminal kinase-interacting protein 4;C-Jun-amino-terminal kinase-interacting protein 3 yes no 2 8.5976E-05 148.38 By MS/MS 3 1.1565 0.98891 11.426 3 Median NaN NaN NaN 0 0 Median 1.1565 0.98891 11.426 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26076000 10425000 15651000 0 0 0 26076000 10425000 15651000 0 0 0 0 0 0 0 0 0 0 0 0 21659 134 22592 114425;114426;114427 115419;115420 115419 2 LMELYER KEAERLAHEDAECEKLMELYERLEELDADK HEDAECEKLMELYERLEELDADKAEMRASR K L M E R L 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 7 0 952.4688 Q9UG63;C9JHK9;C9JZV3 Q9UG63 189 195 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.015867 70.268 By matching By matching By MS/MS 2 1 1 0.50335 0.4362 121.11 4 Median NaN NaN NaN 0 0 Median 0.17347 0.15165 163.84 2 0 Median 0.68923 0.70293 NaN 1 0 Median 0.47103 0.3939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17785000 11173000 6611700 0 0 0 4909200 4390000 519240 9947900 5163000 4784900 2927800 1620300 1307600 0 0 0 0 0 0 21660 4262 22593 114428;114429;114430;114431 115421 115421 1 LMEMGFSR PAAPPLEVSEEQVARLMEMGFSRGDALEAL SEEQVARLMEMGFSRGDALEALRASNNDLN R L M S R G 0 1 0 0 0 0 1 1 0 0 1 0 2 1 0 1 0 0 0 0 0 0 8 0 969.44121 Q8NBM4;X6R5E5 Q8NBM4 313 320 UBAC2 Ubiquitin-associated domain-containing protein 2 yes no 2 0.0024981 107.9 By MS/MS By MS/MS By matching 2 2 1 1.2322 1.1628 14.196 5 Median 1.0405 1.0284 21.916 2 0 Median 1.4802 1.2144 6.1448 2 0 Median 1.0366 1.161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33169000 14447000 18722000 18116000 8270400 9845700 13408000 5204500 8203300 1644800 972100 672670 0 0 0 0 0 0 0 0 0 21661 3406 22594 114432;114433;114434;114435;114436 115422;115423;115424;115425;115426 115423 5 LMEPAVEPLTQALK RRTRMLPVSGAFHTRLMEPAVEPLTQALKA RLMEPAVEPLTQALKAVDIKKPLVSVYSNV R L M L K A 2 0 0 0 0 1 2 0 0 0 3 1 1 0 2 0 1 0 0 1 0 0 14 0 1538.8378 Q8IVS2 Q8IVS2 273 286 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.0010403 51.927 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.96432 0.92925 15.897 4 Median 0.74948 0.6996 NaN 1 0 Median 1.0871 0.93561 NaN 1 1 Median 0.85539 0.92292 NaN 1 0 Median 1.1935 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12126000 6260300 5865600 4859300 2659900 2199400 3181600 1504400 1677200 3275700 1702800 1572800 809340 393180 416170 0 0 0 0 0 0 21662 3319 22595 114437;114438;114439;114440 115427;115428;115429 115428 3 LMETQEEDVVLLTAGEHNK VANFIMESQRLELIRLMETQEEDVVLLTAG QEEDVVLLTAGEHNKACSLLGKLRLECADL R L M N K A 1 0 1 1 0 1 4 1 1 0 3 1 1 0 0 0 2 0 0 2 0 0 19 0 2155.0467 Q6PI48;A0A3B3ISK7;A0A3B3ITS3;A0A3B3ITK9 Q6PI48 429 447 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 2.1418E-05 45.704 By MS/MS 1 0.77086 0.72587 NaN 1 Median 0.77086 0.72587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10416000 6190200 4226200 10416000 6190200 4226200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21663 3171 22596 114441 115430;115431 115430 2 LMFEELR MQVEGVFYVNDALEKLMFEELRNACRGGGV YVNDALEKLMFEELRNACRGGGVGGFLPAM K L M L R N 0 1 0 0 0 0 2 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 7 0 936.47389 Q9Y3I0 Q9Y3I0 45 51 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.016505 71.715 By MS/MS By matching By MS/MS By matching By matching 1 1 3 2 1 1.1761 1.1172 13.506 8 Median 1.1492 1.108 NaN 1 0 Median 0.90534 0.8027 NaN 1 0 Median 1.1374 1.1265 8.3937 3 1 Median 1.3007 1.1178 2.5345 2 0 Median 1.2037 1.213 NaN 1 0 Median NaN NaN NaN 0 0 Median 51360000 22910000 28450000 8414000 3650900 4763100 407050 174690 232360 36361000 16507000 19854000 4625800 1933300 2692400 1552000 643660 908380 0 0 0 21664 4430 22597;22598 114442;114443;114444;114445;114446;114447;114448;114449 115432;115433;115434;115435 115432 1980 4 LMFSSVNSNLQR CGALVFPTIATIVGKLMFSSVNSNLQRTIL VGKLMFSSVNSNLQRTILGGIAFVAIKGAF K L M Q R T 0 1 2 0 0 1 0 0 0 0 2 0 1 1 0 3 0 0 0 1 0 0 12 0 1394.6976 Q9NX47 Q9NX47 226 237 MARCH5 E3 ubiquitin-protein ligase MARCH5 yes yes 2 0.016372 53.327 By MS/MS 1 1.5246 1.2957 NaN 1 Median NaN NaN NaN 0 0 Median 1.5246 1.2957 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307200 1156200 2151000 0 0 0 3307200 1156200 2151000 0 0 0 0 0 0 0 0 0 0 0 0 21665 4158 22599 114450 115436 115436 1 LMGDYLLR KVLQARRERQDRISRLMGDYLLRGYRMLGE RQDRISRLMGDYLLRGYRMLGETCADCGTI R L M L R G 0 1 0 1 0 0 0 1 0 0 3 0 1 0 0 0 0 0 1 0 0 0 8 0 979.51609 H0YEB6;O60232;E9PK41;H0YEK1 H0YEB6 31 38 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 yes no 2 0.015729 69.998 By MS/MS 1 1.4779 1.406 NaN 1 Median 1.4779 1.406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57222000 18988000 38234000 57222000 18988000 38234000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21666 1179 22600 114451 115437 115437 1 LMGFASFDSTK EDLEGKTEEEIEMMKLMGFASFDSTKGKKV EMMKLMGFASFDSTKGKKVDGSVNAYAINV K L M T K G 1 0 0 1 0 0 0 1 0 0 1 1 1 2 0 2 1 0 0 0 0 0 11 0 1202.5642 Q8WVK2;B8ZZ98 Q8WVK2 106 116 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes no 2 0.00016143 81.338 By matching By MS/MS By matching By matching By matching 1 2 2 2 1 1.3265 1.1764 10.023 8 Median NaN NaN NaN 0 0 Median 1.3618 1.1823 NaN 1 0 Median 1.0601 0.99488 1.956 2 0 Median 1.4295 1.1788 6.4156 2 0 Median 1.214 1.2467 8.9304 2 0 Median 1.3959 1.1846 NaN 1 0 Median 32100000 14968000 17132000 0 0 0 129560 53165 76398 25919000 12190000 13729000 1490000 643880 846140 4406400 2016400 2390000 155120 65096 90020 21667 3502 22601;22602 114452;114453;114454;114455;114456;114457;114458;114459 115438;115439 115439 1748 2 LMGFVAEER KKHLSGEFGKPYFIKLMGFVAEERKHYTVY KPYFIKLMGFVAEERKHYTVYPPPHQVFTW K L M E R K 1 1 0 0 0 0 2 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1050.5168 P13051;Q68DM5;F5GYA2 P13051 114 122 UNG;DKFZp781L1143 Uracil-DNA glycosylase yes no 2 0.00073228 101.54 By matching By MS/MS By MS/MS 2 1 2 1.1746 1.0848 19.562 5 Median NaN NaN NaN 0 0 Median 1.3352 1.1656 15.862 2 0 Median 1.1066 1.0848 NaN 1 0 Median 1.0957 0.93737 28.162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12660000 5983700 6676100 0 0 0 948020 393910 554110 8326400 4068900 4257600 3385400 1521000 1864400 0 0 0 0 0 0 21668 1987 22603 114460;114461;114462;114463;114464 115440;115441;115442;115443;115444 115441 5 LMGLEALK GRPFLIIKDQDRKSRLMGLEALKSHIMAAK DQDRKSRLMGLEALKSHIMAAKAVANTMRT R L M L K S 1 0 0 0 0 0 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 8 0 873.49937 P48643;E7ENZ3;D6RIZ7;H0Y914 P48643 28 35 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0052175 77.058 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.3092 1.1834 32.35 6 Median 1.3638 1.2833 14.621 2 0 Median 1.2856 1.078 10.559 2 0 Median 1.2294 1.2056 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.585 2.4844 NaN 1 0 Median NaN NaN NaN 0 0 Median 99879000 43153000 56727000 47742000 20446000 27296000 41792000 18509000 23283000 8866400 3859400 5007000 0 0 0 1478700 338400 1140300 0 0 0 21669 2364 22604;22605 114465;114466;114467;114468;114469;114470 115445;115446;115447;115448;115449 115446 1082 5 LMHGILTEQK TSLGPTLEPEEVVNRLMHGILTEQKMIFIP EVVNRLMHGILTEQKMIFIPSSIAFLTTLE R L M Q K M 0 0 0 0 0 1 1 1 1 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1168.6274 D6RCD0;Q8NBQ5 D6RCD0 202 211 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 0.0064357 49.097 By MS/MS By matching By matching 1 1 1 1.4179 1.3176 61.593 3 Median 1.4179 1.3176 NaN 1 0 Median 0.53235 0.46577 NaN 1 0 Median 1.4483 1.3879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16936000 8249100 8686900 9324300 3701800 5622500 6137500 3849800 2287700 1474200 697440 776780 0 0 0 0 0 0 0 0 0 21670 819 22606 114471;114472;114473 115450 115450 1 LMHLVVESFPSYR SFLNCVRESENSAQKLMHLVVESFPSYRDV QKLMHLVVESFPSYRDVTLFEGKRVSFYKR K L M Y R D 0 1 0 0 0 0 1 0 1 0 2 0 1 1 1 2 0 0 1 2 0 0 13 0 1576.8072 Q5T6V5;Q5T6V7;Q5T6V6 Q5T6V5 181 193 C9orf64 UPF0553 protein C9orf64 yes no 3 0.030852 19.74 By MS/MS By matching By matching 2 1 1 0.95974 0.92849 4.2189 4 Median 0.95974 0.95336 2.6446 2 0 Median 1.0665 0.92133 NaN 1 0 Median 0.89594 0.8773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3776700 1959100 1817700 3215800 1667300 1548500 278790 134250 144530 282150 157500 124650 0 0 0 0 0 0 0 0 0 21671 3092 22607 114474;114475;114476;114477 115451 115451 1 LMHQAALLGQALQDSR GLGGTCVNVGCIPKKLMHQAALLGQALQDS MHQAALLGQALQDSRNYGWKVEETVKHDWD K L M S R N 3 1 0 1 0 3 0 1 1 0 4 0 1 0 0 1 0 0 0 0 0 0 16 0 1750.9148 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3;A0A0B4J225;E9PIZ5 E9PIR7 69 84 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 3 3.7442E-05 59.862 By MS/MS By MS/MS 1 2 1.3308 1.2849 35.86 3 Median 1.5884 1.5148 NaN 1 0 Median 1.0886 0.9896 36.928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16953000 7037300 9915600 12322000 4507600 7814400 4630900 2529700 2101300 0 0 0 0 0 0 0 0 0 0 0 0 21672 11 22608 114478;114479;114480 115452;115453 115452 2 LMHVAYEEFEK RDLSSQLLKVLGTRKLMHVAYEEFEKVMVA GTRKLMHVAYEEFEKVMVACFEVFQTWDDE K L M E K V 1 0 0 0 0 0 3 0 1 0 1 1 1 1 0 0 0 0 1 1 0 0 11 0 1394.654 Q14204 Q14204 401 411 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 4.248E-05 82.171 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 0.84941 0.86581 24.185 8 Median 0.67176 0.65323 34.946 2 0 Median 0.93192 0.82412 NaN 1 0 Median 0.97586 1.0427 7.8593 3 2 Plateau 0.94201 0.85124 31.622 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43245000 21583000 21662000 9494200 5023700 4470500 10878000 5506400 5371100 21889000 10606000 11283000 985020 447180 537840 0 0 0 0 0 0 21673 2865 22609 114481;114482;114483;114484;114485;114486;114487;114488 115454;115455;115456;115457;115458;115459;115460;115461 115456 7 LMIEMDGTENK VSKKLNVTEQEKIDKLMIEMDGTENKSKFG KIDKLMIEMDGTENKSKFGANAILGVSLAV K L M N K S 0 0 1 1 0 0 2 1 0 1 1 1 2 0 0 0 1 0 0 0 0 0 11 0 1279.5788 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 93 103 ENO1 Alpha-enolase;Enolase yes no 2 8.9242E-10 174.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 11 5 3 1 2 1.1561 1.0314 16.521 30 Median 1.1581 1.0723 17.004 8 0 Median 1.1585 0.9899 21.61 11 1 Median 1.0973 1.0563 9.1028 5 0 Median 1.2065 1.0839 5.7211 3 0 Median 1.249 1.1908 NaN 1 0 Median 1.0602 0.89012 7.3193 2 0 Median 1204800000 536170000 668650000 409630000 178330000 231300000 482630000 219610000 263020000 221880000 96073000 125810000 85086000 39908000 45178000 3854900 1485700 2369200 1744100 765290 978830 21674 1873 22610;22611;22612 114489;114490;114491;114492;114493;114494;114495;114496;114497;114498;114499;114500;114501;114502;114503;114504;114505;114506;114507;114508;114509;114510;114511;114512;114513;114514;114515;114516;114517;114518 115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484;115485;115486;115487;115488;115489;115490;115491;115492;115493;115494;115495;115496;115497;115498;115499;115500;115501;115502;115503;115504;115505;115506;115507;115508 115505 635;636 46 LMILPDPEKPVR KAIYNKSIIEGPIIKLMILPDPEKPVRLNV IIKLMILPDPEKPVRLNVKYDKDASFLAGG K L M V R L 0 1 0 1 0 0 1 0 0 1 2 1 1 0 3 0 0 0 0 1 0 0 12 1 1406.7956 A6NHR9;J3KTL8 A6NHR9 1359 1370 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 4.5157E-05 88.596 By matching By MS/MS By matching 1 1 1 0.59096 0.70847 22.788 3 Median NaN NaN NaN 0 0 Median 0.58083 0.55832 NaN 1 0 Median 0.59096 0.70847 NaN 1 0 Median 0.91212 0.88055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10482000 6191900 4290000 0 0 0 913270 566440 346830 9258000 5465000 3793100 310660 160520 150140 0 0 0 0 0 0 21675 518 22613 114519;114520;114521 115509;115510;115511 115511 3 LMITDAAR VLINPSDEAVSTEVRLMITDAARHKLLVLT AVSTEVRLMITDAARHKLLVLTGQCFENTG R L M A R H 2 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 8 0 889.46914 P46821;D6RA32 P46821 126 133 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 0.0053972 85.265 By MS/MS By MS/MS 2 2 1.3785 1.2101 31.646 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2967 1.4018 43.115 2 1 Median 1.3785 1.2101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15915000 5750100 10165000 0 0 0 0 0 0 13862000 4974400 8887200 2053700 775720 1278000 0 0 0 0 0 0 21676 2347 22614 114522;114523;114524;114525 115512;115513;115514;115515 115512 4 LMITHIVNQNFK PPPPPAMTNEAGAPRLMITHIVNQNFKSYA APRLMITHIVNQNFKSYAGEKILGPFHKRF R L M F K S 0 0 2 0 0 1 0 0 1 2 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1456.7861 Q9NTJ3;E9PD53;C9JR83;C9JWF0;C9IYK2;C9JJ64;C9J9E4 Q9NTJ3 82 93 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 7.0625E-41 223.84 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 1.071 1.0215 16.38 11 Median 1.029 1.0215 2.7999 3 0 Median 1.2406 1.1027 17.866 4 0 Linear 1.1721 1.2521 1.5282 2 2 Median 1.1313 1.0294 7.6872 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95718000 46873000 48845000 58164000 29478000 28686000 12433000 6026200 6407200 23051000 10457000 12593000 2070800 912440 1158300 0 0 0 0 0 0 21677 4108 22615 114526;114527;114528;114529;114530;114531;114532;114533;114534;114535;114536 115516;115517;115518;115519;115520;115521;115522;115523;115524;115525;115526;115527 115519 12 LMIWDTR LLHESLFGSVADDQKLMIWDTRSNTTSKPS GSVADDQKLMIWDTRSNTTSKPSHLVDAHT K L M T R S 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 0 7 0 933.47422 Q09028;H0YF10;H0YCT5;H0YDK2;Q16576;E9PC52;Q5JP02;Q5JP01 Q16576 251 257 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.0061063 94.407 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 5 6 7 3 1.1457 1.0906 10.724 29 Median 1.1156 1.0546 21.966 5 1 Median 1.3357 1.1211 0.91321 3 0 Plateau 1.1039 1.0469 9.4428 5 0 Median 1.2576 1.0884 7.6821 6 0 Median 1.1165 1.132 8.1474 7 0 Median 1.2715 1.0924 7.8176 3 0 Median 366350000 166430000 199930000 31064000 14591000 16473000 25871000 11404000 14467000 160730000 75085000 85640000 79434000 34254000 45179000 63987000 28741000 35246000 5273200 2353700 2919400 21678 2746;2990 22616;22617 114537;114538;114539;114540;114541;114542;114543;114544;114545;114546;114547;114548;114549;114550;114551;114552;114553;114554;114555;114556;114557;114558;114559;114560;114561;114562;114563;114564;114565 115528;115529;115530;115531;115532;115533;115534;115535;115536;115537;115538;115539;115540;115541;115542;115543;115544 115542 1428 17 LMKEILDK KKMEESKAKFENLCKLMKEILDKKVEKVTI KFENLCKLMKEILDKKVEKVTISNRLVSSP K L M D K K 0 0 0 1 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 8 1 988.5627 P08238;Q58FF7;Q58FF6 P08238 566 573 HSP90AB1;HSP90AB3P;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4 no no 2 0.045213 60.59 By MS/MS 1 1.1925 1.2148 NaN 1 Median 1.1925 1.2148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112980000 53007000 59971000 112980000 53007000 59971000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21679 1899;3039 22618 114566 115545 115545 1 LMLAQDEER LLTPLMEKFKILLEKLMLAQDEERQASLAD KILLEKLMLAQDEERQASLADCLNHAVGFA K L M E R Q 1 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1103.5281 O43592 O43592 635 643 XPOT Exportin-T yes yes 2 0.00073228 101.54 By MS/MS By MS/MS 1 2 1.1744 1.0741 12.621 2 Median 1.2166 1.1743 NaN 1 0 Median 1.1337 0.98237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11309000 4523200 6786100 7549600 2929900 4619600 3759700 1593300 2166400 0 0 0 0 0 0 0 0 0 0 0 0 21680 1576 22619 114567;114568;114569 115546;115547;115548;115549;115550 115546 5 LMLDGDR NMPLPGYKVREIIQKLMLDGDRNKDGKISF KVREIIQKLMLDGDRNKDGKISFDEFVYIF K L M D R N 0 1 0 2 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 818.39564 P13797;A0A0A0MSQ0;U3KQI3 P13797 60 66 PLS3 Plastin-3 yes no 2 0.0017091 130.05 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.19 1.0733 18.751 4 Median 1.1583 1.0926 NaN 1 0 Median 1.2225 1.0544 NaN 1 0 Median 1.3188 1.3443 NaN 1 0 Median 1.0172 0.85043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106170000 48510000 57659000 27084000 14247000 12837000 67552000 29294000 38258000 10425000 4477700 5947500 1108400 491320 617110 0 0 0 0 0 0 21681 1995 22620 114570;114571;114572;114573 115551;115552;115553;115554;115555;115556;115557;115558 115555 8 LMLDGDRNK NMPLPGYKVREIIQKLMLDGDRNKDGKISF REIIQKLMLDGDRNKDGKISFDEFVYIFQE K L M N K D 0 1 1 2 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 1 1060.5335 P13797;A0A0A0MSQ0;U3KQI3 P13797 60 68 PLS3 Plastin-3 yes no 2 0.013459 69.198 By MS/MS By MS/MS 1 1 1.3251 1.2713 7.7194 2 Median 1.3324 1.3427 NaN 1 0 Median 1.3179 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10370000 4257100 6112700 3615300 1441600 2173700 6754400 2815500 3939000 0 0 0 0 0 0 0 0 0 0 0 0 21682 1995 22621 114574;114575 115559;115560 115560 2 LMLDGDRNKDGK NMPLPGYKVREIIQKLMLDGDRNKDGKISF IQKLMLDGDRNKDGKISFDEFVYIFQEVKS K L M G K I 0 1 1 3 0 0 0 2 0 0 2 2 1 0 0 0 0 0 0 0 0 0 12 2 1360.6769 P13797;A0A0A0MSQ0;U3KQI3 P13797 60 71 PLS3 Plastin-3 yes no 2;3 0.00029875 59.367 By MS/MS By MS/MS By matching 3 2 1 1.0533 1.0995 15.886 6 Median 1.0658 1.1269 4.765 3 0 Median 1.0177 0.96808 26.342 2 0 Median 0.78156 0.89132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24052000 11432000 12621000 16864000 7860200 9003900 5804000 2860900 2943100 1384400 710640 673730 0 0 0 0 0 0 0 0 0 21683 1995 22622 114576;114577;114578;114579;114580;114581 115561;115562;115563 115562 3 LMLDLNK LMSDVPIRHSRKMRKLMLDLNKAKSMGQRL RHSRKMRKLMLDLNKAKSMGQRLSLISKFR K L M N K A 0 0 1 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 7 0 845.46807 P55084;F5GZQ3 P55084 182 188 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.017757 64.803 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1.2804 1.1985 7.5214 5 Median 1.2212 1.1522 NaN 1 0 Median 1.3356 1.1434 12.769 2 0 Median 1.2804 1.2525 NaN 1 0 Median 1.3348 1.1985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23154000 9427500 13727000 5174500 2299400 2875200 3685300 1498300 2187000 6720600 3071000 3649600 7573800 2558800 5015000 0 0 0 0 0 0 21684 2496 22623 114582;114583;114584;114585;114586 115564;115565;115566;115567 115566 4 LMLEWVR KVGEVVDKLFDLDEKLMLEWVRNGAAQPLD KLFDLDEKLMLEWVRNGAAQPLDQPQEESE K L M V R N 0 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 1 0 1 0 0 7 0 945.51061 Q96ER3;H0YCN7;H0YEK5;E9PMD2;J3KND1;E9PRZ1 Q96ER3 217 223 SAAL1 Protein SAAL1 yes no 2 0.051299 39.542 By MS/MS By matching 1 1 1.2269 1.1388 36.425 2 Median 1.4917 1.4734 NaN 1 0 Median 1.0092 0.88022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2079400 880220 1199200 1192800 434870 757930 886590 445360 441230 0 0 0 0 0 0 0 0 0 0 0 0 21685 3639 22624 114587;114588 115568 115568 1 LMLIELK LLEGEKYLQSKEDLRLMLIELKKKQEAGFA LQSKEDLRLMLIELKKKQEAGFALQHGLQE R L M L K K 0 0 0 0 0 0 1 0 0 1 3 1 1 0 0 0 0 0 0 0 0 0 7 0 858.52486 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2156 2162 SYNE2 Nesprin-2 yes no 2 0.024489 55.441 By MS/MS 1 0.94846 1.0376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94846 1.0376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2097900 1075300 1022600 0 0 0 0 0 0 2097900 1075300 1022600 0 0 0 0 0 0 0 0 0 21686 3521 22625 114589 115569;115570 115569 2 LMLISMANDLK NGDQSHKMTTSRCVRLMLISMANDLKEVWI RCVRLMLISMANDLKEVWISEQPFLLVTYL R L M L K E 1 0 1 1 0 0 0 0 0 1 3 1 2 0 0 1 0 0 0 0 0 0 11 0 1247.6618 Q9Y394;H0YJ66;H0YJR8 Q9Y394 272 282 DHRS7 Dehydrogenase/reductase SDR family member 7 yes no 2 0.0092274 39.022 By MS/MS 1 1.2833 1.0788 NaN 1 Median NaN NaN NaN 0 0 Median 1.2833 1.0788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3238100 1336300 1901800 0 0 0 3238100 1336300 1901800 0 0 0 0 0 0 0 0 0 0 0 0 21687 4408 22626 114590 115571 115571 1 LMLLESWR EANKTMRNCEEKEERLMLLESWRSFEEEFG CEEKEERLMLLESWRSFEEEFGTASDKERV R L M W R S 0 1 0 0 0 0 1 0 0 0 3 0 1 0 0 1 0 1 0 0 0 0 8 0 1046.5583 Q5JY65;Q9BZJ0 Q5JY65 740 747 CRNKL1 Crooked neck-like protein 1 yes no 2 0.066188 31.289 By MS/MS By matching By matching 1 1 1 1.4371 1.1725 48.395 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62143 0.66326 NaN 1 0 Median 1.4371 1.1725 NaN 1 0 Median 1.6459 1.7365 NaN 1 0 Median NaN NaN NaN 0 0 Median 2731200 1495800 1235400 0 0 0 0 0 0 2237400 1299900 937500 34973 12681 22292 458840 183220 275620 0 0 0 21688 3061 22627 114591;114592;114593 115572 115572 1 LMLPPPPLTASGVFSK GDVGLVAENSRSTQRLMLPPPPLTASGVFS MLPPPPLTASGVFSKFRDIARLTGSASTAK R L M S K F 1 0 0 0 0 0 0 1 0 0 3 1 1 1 4 2 1 0 0 1 0 0 16 0 1653.9164 F5GZ28;P18858;M0R0Q7 F5GZ28 324 339 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.00028884 48.741 By MS/MS By matching 1 1 0.66085 0.61393 41.396 2 Median 0.45656 0.45813 NaN 1 0 Median 0.95655 0.8227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2491700 1344500 1147200 1708000 1141200 566830 783700 203300 580410 0 0 0 0 0 0 0 0 0 0 0 0 21689 1014 22628 114594;114595 115573 115573 1 LMLSTSEYSQSPK SPEDLGLSLTGDSCKLMLSTSEYSQSPKME CKLMLSTSEYSQSPKMESLSSHRIDEDGEN K L M P K M 0 0 0 0 0 1 1 0 0 0 2 1 1 0 1 4 1 0 1 0 0 0 13 0 1469.7072 A6NNK5;Q12888;C9JXV0 A6NNK5 520 532 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 6.2897E-07 166.55 By MS/MS By MS/MS 1 1 0.76713 0.76538 15.862 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62125 0.68417 NaN 1 0 Median 0.94726 0.85622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24424000 14859000 9565100 0 0 0 0 0 0 21599000 13348000 8251300 2824900 1511200 1313800 0 0 0 0 0 0 21690 530 22629 114596;114597 115574;115575 115574 2 LMMDPLSGQNR LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF WDLRLMMDPLSGQNRGYAFITFCGKEAAQE R L M N R G 0 1 1 1 0 1 0 1 0 0 2 0 2 0 1 1 0 0 0 0 0 0 11 0 1260.5955 O43390;B4DT28 O43390 196 206 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.00013635 105.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 10 6 17 6 0.92581 0.86301 34.113 40 Median NaN NaN NaN 0 0 Median 1.1155 0.96553 10.304 2 0 Median 0.86746 0.87388 30.244 10 1 Median 1.0595 0.90982 20.455 6 1 Median 0.84294 0.8468 44.99 16 5 Median 1.0795 0.89728 23.527 6 2 Median 554920000 307500000 247420000 0 0 0 11974000 5214100 6759600 284060000 160670000 123390000 10322000 4714200 5608000 210060000 119770000 90291000 38498000 17131000 21367000 21691 1568 22630;22631;22632 114598;114599;114600;114601;114602;114603;114604;114605;114606;114607;114608;114609;114610;114611;114612;114613;114614;114615;114616;114617;114618;114619;114620;114621;114622;114623;114624;114625;114626;114627;114628;114629;114630;114631;114632;114633;114634;114635;114636;114637;114638 115576;115577;115578;115579;115580;115581;115582;115583;115584;115585;115586;115587;115588;115589;115590;115591;115592;115593;115594;115595;115596;115597;115598;115599;115600;115601;115602;115603;115604;115605;115606;115607;115608;115609;115610;115611;115612;115613;115614;115615;115616;115617;115618;115619 115607 505;506 44 LMMDPLTGLNR LVPLFEKAGPIWDLRLMMDPLTGLNRGYAF WDLRLMMDPLTGLNRGYAFVTFCTKEAAQE R L M N R G 0 1 1 1 0 0 0 1 0 0 3 0 2 0 1 0 1 0 0 0 0 0 11 0 1259.6366 B7Z645;O60506 O60506 193 203 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 0.00019153 107.57 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 9 6 5 1 1.0046 0.91353 135.14 26 Median 0.93024 0.89895 7.2265 3 0 Median 1.1625 0.99597 19.928 2 0 Median 0.96852 0.98941 214.89 9 3 Median 1.0214 0.856 12.586 6 0 Median 1.0487 1.1283 120.87 5 0 Median 1.0403 0.89325 NaN 1 0 Median 354610000 271320000 83287000 20280000 11061000 9219200 5430600 2559200 2871400 282300000 233300000 49004000 17797000 8566200 9230700 27289000 15081000 12208000 1505300 750820 754430 21692 1619;634 22633;22634;22635 114639;114640;114641;114642;114643;114644;114645;114646;114647;114648;114649;114650;114651;114652;114653;114654;114655;114656;114657;114658;114659;114660;114661;114662;114663;114664 115620;115621;115622;115623;115624;115625;115626;115627;115628;115629;115630;115631;115632;115633;115634;115635;115636 115620 238;239 17 LMMNLLR FTIMTKYISKPENLKLMMNLLRDKSRNIQF ISKPENLKLMMNLLRDKSRNIQFEAFHVFK K L M L R D 0 1 1 0 0 0 0 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 7 0 889.48776 Q9Y376;A0A087X0K1;B7ZBJ4;Q5TAW7;Q9H9S4 Q9Y376 258 264 CAB39;CAB39L Calcium-binding protein 39;Calcium-binding protein 39-like yes no 2 0.025249 54.525 By MS/MS By matching By matching 1 2 1 1.2485 1.0241 12.114 4 Linear 1.2604 1.2532 NaN 1 0 Median 1.2103 1.0241 1.1804 2 0 Median NaN NaN NaN 0 0 Median 1.1148 0.94349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8630800 4254900 4375900 4058600 2036900 2021600 4385900 2155700 2230100 0 0 0 186410 62257 124150 0 0 0 0 0 0 21693 4406 22636 114665;114666;114667;114668 115637;115638 115638 2 LMMSELENR YIEKSLLVPDHVITRLMMSELENRRGQHWL DHVITRLMMSELENRRGQHWLLDGFPRTLG R L M N R R 0 1 1 0 0 0 2 0 0 0 2 0 2 0 0 1 0 0 0 0 0 0 9 0 1121.5209 P27144;D3DQ64 P27144 72 80 AK4 Adenylate kinase 4, mitochondrial yes no 2 0.00054934 105.57 By MS/MS By MS/MS By MS/MS 1 1 1 1.3402 1.2769 7.1945 3 Median 1.1892 1.1295 NaN 1 0 Median 1.5159 1.2818 NaN 1 1 Median 1.3402 1.2769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28568000 11566000 17002000 19504000 8164500 11340000 5658200 2140800 3517400 3405500 1260400 2145100 0 0 0 0 0 0 0 0 0 21694 2151 22637 114669;114670;114671 115639;115640;115641;115642 115642 4 LMMSELENRR YIEKSLLVPDHVITRLMMSELENRRGQHWL HVITRLMMSELENRRGQHWLLDGFPRTLGQ R L M R R G 0 2 1 0 0 0 2 0 0 0 2 0 2 0 0 1 0 0 0 0 0 0 10 1 1277.622 P27144;D3DQ64 P27144 72 81 AK4 Adenylate kinase 4, mitochondrial yes no 3 0.00082754 56.632 By MS/MS By matching By matching 1 1 1 1.2487 1.3348 33.695 3 Plateau 1.2487 1.3348 NaN 1 0 Median 1.1159 0.94767 NaN 1 0 Median 0.65621 0.68039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8902700 3740700 5162000 6852400 2751400 4101000 1494700 663870 830870 555630 325420 230200 0 0 0 0 0 0 0 0 0 21695 2151 22638 114672;114673;114674 115643 115643 1 LMMSHTLK RLKEEEGRITIRGGKLMMSHTLKSDAGMYV ITIRGGKLMMSHTLKSDAGMYVCVASNMAG K L M L K S 0 0 0 0 0 0 0 0 1 0 2 1 2 0 0 1 1 0 0 0 0 0 8 0 959.49324 F5GWJ5;Q96MS0 F5GWJ5 199 206 ROBO3 Roundabout homolog 3 yes no 2 0.035292 45.718 By MS/MS By matching 1 1 1.4768 1.2793 14.707 2 Median 1.2679 1.153 NaN 1 0 Median 1.7202 1.4195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18438000 7552300 10885000 12622000 5528200 7094200 5815100 2024200 3791000 0 0 0 0 0 0 0 0 0 0 0 0 21696 1000 22639 114675;114676 115644 115644 350;351 1 LMNDFSAALNNFQAVQR LSTSEQRQQRLQKERLMNDFSAALNNFQAV NDFSAALNNFQAVQRRVSEKEKESIARARA R L M Q R R 3 1 3 1 0 2 0 0 0 0 2 0 1 2 0 1 0 0 0 1 0 0 17 0 1937.9418 B1AJQ6;Q86Y82 B1AJQ6 106 122 STX12 Syntaxin-12 yes no 2;3 2.2387E-10 101.95 By MS/MS By matching 3 2 1.0596 1.0123 14.492 5 Median 1.0596 1.0123 1.3143 3 0 Plateau 1.4864 1.2587 15.067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17077000 7489300 9588000 14564000 6542000 8022100 2513300 947370 1565900 0 0 0 0 0 0 0 0 0 0 0 0 21697 563 22640 114677;114678;114679;114680;114681 115645;115646;115647 115645 3 LMNDMTAVALNYGIYK SVLDAAQIVGLNCLRLMNDMTAVALNYGIY MNDMTAVALNYGIYKQDLPSLDEKPRIVVF R L M Y K Q 2 0 2 1 0 0 0 1 0 1 2 1 2 0 0 0 1 0 2 1 0 0 16 0 1815.8899 Q92598 Q92598 170 185 HSPH1 Heat shock protein 105 kDa yes yes 2 0.00013168 51.927 By MS/MS By matching 1 2 0.84466 0.7626 34.67 3 Median 1.3888 1.3695 NaN 1 0 Median 0.84314 0.75161 2.0523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5924500 2758900 3165600 3526700 1490800 2035800 2397900 1268100 1129800 0 0 0 0 0 0 0 0 0 0 0 0 21698 3541 22641 114682;114683;114684 115648;115649 115648 2 LMNESLMLVTALNPHIGYDK NCVVGIQANTERINKLMNESLMLVTALNPH LMLVTALNPHIGYDKAAKIAKTAHKNGSTL K L M D K A 1 0 2 1 0 0 1 1 1 1 4 1 2 0 1 1 1 0 1 1 0 0 20 0 2258.1439 P07954 P07954 448 467 FH Fumarate hydratase, mitochondrial yes yes 3 0.017557 16.228 By MS/MS 2 0.90681 0.78353 7.0454 2 Median NaN NaN NaN 0 0 Median 0.90681 0.78353 7.0454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2110600 1052800 1057800 0 0 0 2110600 1052800 1057800 0 0 0 0 0 0 0 0 0 0 0 0 21699 1896 22642 114685;114686 115650;115651 115651 2 LMNETTAVALAYGIYK SVMDATQIAGLNCLRLMNETTAVALAYGIY MNETTAVALAYGIYKQDLPALEEKPRNVVF R L M Y K Q 3 0 1 0 0 0 1 1 0 1 2 1 1 0 0 0 2 0 2 1 0 0 16 0 1756.907 P34932;A0A087WYC1;A0A087WTS8;O95757;E9PDE8;D6RJ96 P34932 170 185 HSPA4;HSPA4L Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L no no 2 6.5077E-14 104.52 By MS/MS By MS/MS 1 3 1.1821 1.1443 8.3107 3 Plateau 1.1821 1.1461 NaN 1 0 Median 1.1717 0.99503 2.2397 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21101000 9393900 11707000 8607400 3924300 4683100 12493000 5469700 7023500 0 0 0 0 0 0 0 0 0 0 0 0 21700 2230;1790 22643 114687;114688;114689;114690 115652;115653;115654;115655;115656 115656 5 LMNFMYFQR IYEKTVEVLEPEVTKLMNFMYFQRNAIERF EPEVTKLMNFMYFQRNAIERFCGEVRRLCH K L M Q R N 0 1 1 0 0 1 0 0 0 0 1 0 2 2 0 0 0 0 1 0 0 0 9 0 1248.5784 Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JRX2;A0A087WU52;A0A0G2JRV9;A0A087WWL1 Q7L576 122 130 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 2 0.0092157 49.358 By matching By matching By MS/MS 1 1 1 1.1071 1.1869 9.1435 3 Plateau 1.1071 1.1094 NaN 1 0 Median 1.121 0.99044 NaN 1 0 Median 1.0811 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4869800 2289500 2580300 1344500 645280 699210 518500 242720 275780 3006800 1401500 1605300 0 0 0 0 0 0 0 0 0 21701 3224 22644 114691;114692;114693 115657 115657 1 LMNNHQLELAK TLEKGKPLVVVINEKLMNNHQLELAKQLHK INEKLMNNHQLELAKQLHKEGHLFYCTCST K L M A K Q 1 0 2 0 0 1 1 0 1 0 3 1 1 0 0 0 0 0 0 0 0 0 11 0 1309.6813 A0A096LP10;A0A096LNJ4;A0A087WX43;D6RE84;A0A087WTT9;A0A1B0GVW6;Q9NP73 A0A096LP10 101 111 ALG13 Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 yes no 3 0.00067899 73.781 By MS/MS 1 0.13724 0.11767 NaN 1 Median NaN NaN NaN 0 0 Median 0.13724 0.11767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6634900 5957000 677900 0 0 0 6634900 5957000 677900 0 0 0 0 0 0 0 0 0 0 0 0 21702 142 22645 114694 115658 115658 1 LMNQMNAR LKIKGNMALAIKLEKLMNQMNARL______ LAIKLEKLMNQMNARL______________ K L M A R L 1 1 2 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 8 0 976.45826 Q6YN16 Q6YN16 410 417 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 2 0.0048035 79.454 By MS/MS 1 1.2501 1.0726 NaN 1 Median NaN NaN NaN 0 0 Median 1.2501 1.0726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2146600 962070 1184500 0 0 0 2146600 962070 1184500 0 0 0 0 0 0 0 0 0 0 0 0 21703 3195 22646 114695 115659;115660 115659 2 LMNVIEK VLRYTKLTDAQILTRLMNVIEKERVPYTDD TDAQILTRLMNVIEKERVPYTDDGLEAIIF R L M E K E 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 7 0 845.46807 P35250;A0A087WVY3;H7C5P4 P35250 202 208 RFC2 Replication factor C subunit 2 yes no 2 0.018506 62.659 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2632 1.0865 28.883 5 Median NaN NaN NaN 0 0 Median 1.2632 1.0865 NaN 1 0 Median 0.99319 1.0011 44.582 2 0 Median 1.37 1.1591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88421 0.71979 NaN 1 0 Median 20180000 9729500 10451000 0 0 0 3334700 1385500 1949200 9030800 4208000 4822800 2614700 1275600 1339200 0 0 0 5200000 2860500 2339500 21704 2238 22647 114696;114697;114698;114699;114700 115661;115662;115663 115662 3 LMPALGVSVADQK TPDLKPTEASSSAFRLMPALGVSVADQKGK FRLMPALGVSVADQKGKSTVASSEAKPAAT R L M Q K G 2 0 0 1 0 1 0 1 0 0 2 1 1 0 1 1 0 0 0 2 0 0 13 0 1327.717 Q6P4R8 Q6P4R8 1060 1072 NFRKB Nuclear factor related to kappa-B-binding protein yes yes 2 0.00021827 80.763 By MS/MS 1 0.92165 0.99964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92165 0.99964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4575600 2139800 2435800 0 0 0 0 0 0 4575600 2139800 2435800 0 0 0 0 0 0 0 0 0 21705 3159 22648 114701 115664 115664 1 LMPEIVATASK LAEVMAGLGVEKLEKLMPEIVATASKVDIA KLEKLMPEIVATASKVDIAPHVRDGYIMMF K L M S K V 2 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 1 0 0 1 0 0 11 0 1158.6318 Q92616 Q92616 1735 1745 GCN1L1 Translational activator GCN1 yes yes 2 0.00041805 70.1 By MS/MS By MS/MS 1 2 0.89418 0.79568 6.6577 3 Median 0.79884 0.76934 NaN 1 0 Median 0.93947 0.83428 6.6992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44186000 20950000 23236000 18891000 9837000 9054500 25294000 11113000 14181000 0 0 0 0 0 0 0 0 0 0 0 0 21706 3544 22649 114702;114703;114704 115665;115666;115667;115668 115665 4 LMPPDSTTIEK LNMPPLRDGARVLMKLMPPDSTTIEKLRAI VLMKLMPPDSTTIEKLRAICLDHAKLGESS K L M E K L 0 0 0 1 0 0 1 0 0 1 1 1 1 0 2 1 2 0 0 0 0 0 11 0 1230.6166 Q93008 Q93008 1046 1056 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.0054913 53.756 By MS/MS 3 1.1742 1.0477 8.7543 3 Plateau NaN NaN NaN 0 0 Median 1.1742 1.0477 8.7543 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55206000 25377000 29829000 0 0 0 55206000 25377000 29829000 0 0 0 0 0 0 0 0 0 0 0 0 21707 3573 22650 114705;114706;114707 115669;115670;115671;115672 115671 4 LMPTQWR EWSREEEEKLLHLAKLMPTQWRTIAPIIGR EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE K L M W R T 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 7 0 930.47456 Q99459 Q99459 77 83 CDC5L Cell division cycle 5-like protein yes yes 2 0.0083653 86.086 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.88804 0.82962 19.037 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80799 0.8573 NaN 1 0 Median 0.838 0.69313 25.42 2 0 Median 0.89849 0.94744 NaN 1 0 Median 0.88804 0.72271 NaN 1 0 Median 18658000 10228000 8430200 0 0 0 0 0 0 12694000 7314800 5379100 977250 592440 384810 3932300 1760500 2171700 1054300 559750 494510 21708 3745 22651 114708;114709;114710;114711;114712 115673;115674;115675 115673 3 LMPVSAQTPK QRNQDRSKSAAELEKLMPVSAQTPKGRRLS AELEKLMPVSAQTPKGRRLSGEERGLWSTD K L M P K G 1 0 0 0 0 1 0 0 0 0 1 1 1 0 2 1 1 0 0 1 0 0 10 0 1070.5794 Q99549;A0A0A0MT47 Q99549 378 387 MPHOSPH8 M-phase phosphoprotein 8 yes no 2 0.038915 31.422 By MS/MS 1 0.69405 0.71772 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69405 0.71772 NaN 1 0 Median NaN NaN NaN 0 0 Median 4285900 2199200 2086700 0 0 0 0 0 0 0 0 0 0 0 0 4285900 2199200 2086700 0 0 0 21709 3752 22652 114713 115676 115676 1 LMQDKEEMIGK KEVVRERQENLRLVRLMQDKEEMIGKLKEE RLVRLMQDKEEMIGKLKEEIDLLNRDLDDI R L M G K L 0 0 0 1 0 1 2 1 0 1 1 2 2 0 0 0 0 0 0 0 0 0 11 1 1320.6418 Q96IZ0;H0YHP5 Q96IZ0 292 302 PAWR PRKC apoptosis WT1 regulator protein yes no 3 0.010643 30.331 By matching By matching By MS/MS 1 2 2 0.9477 0.90015 17.359 5 Median NaN NaN NaN 0 0 Median 1.078 0.98202 NaN 1 0 Median 0.94283 1.0107 17.03 2 0 Median 0.86748 0.79779 17.072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8049400 4000500 4048800 0 0 0 415150 255060 160090 4577100 2164600 2412500 3057100 1580900 1476300 0 0 0 0 0 0 21710 3681 22653 114714;114715;114716;114717;114718 115677;115678 115678 2 LMQESVR TDVLQKKQEAESAVRLMQESVRRIIEAEES QEAESAVRLMQESVRRIIEAEESRMGLIIV R L M V R R 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 7 0 861.43784 Q9NVH1 Q9NVH1 444 450 DNAJC11 DnaJ homolog subfamily C member 11 yes yes 2 0.034996 60.788 By MS/MS 1 2.1756 1.8847 NaN 1 Median NaN NaN NaN 0 0 Median 2.1756 1.8847 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4598700 1256300 3342400 0 0 0 4598700 1256300 3342400 0 0 0 0 0 0 0 0 0 0 0 0 21711 4130 22654 114719 115679 115679 1 LMQGFNEDMAIEAQQK LVKLCQDLPCFSREKLMQGFNEDMAIEAQQ MQGFNEDMAIEAQQKFKINKQHARRVYEIL K L M Q K F 2 0 1 1 0 3 2 1 0 1 1 1 2 1 0 0 0 0 0 0 0 0 16 0 1851.8495 O14929 O14929 305 320 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 0.00013783 59.542 By MS/MS By matching 1 1 0.94979 0.85272 17.733 2 Median 1.0271 0.96664 NaN 1 0 Median 0.87833 0.75223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6753200 3314300 3438900 5809500 2872500 2937000 943680 441780 501900 0 0 0 0 0 0 0 0 0 0 0 0 21712 1504 22655 114720;114721 115680;115681 115680 2 LMQIQPNREDTETLIK LNSKQLNRLLGVSWRLMQIQPNREDTETLI MQIQPNREDTETLIKAVYTLYQQRGLILPV R L M I K A 0 1 1 1 0 2 2 0 0 2 2 1 1 0 1 0 2 0 0 0 0 0 16 1 1928.0037 Q9NXF1;A0A0A0MSR3 Q9NXF1 489 504 TEX10 Testis-expressed sequence 10 protein yes no 3 0.030139 16.744 By MS/MS By MS/MS By matching 1 2 1 0.85109 0.95137 23.278 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71444 0.80898 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85109 0.95137 14.723 2 0 Median 1.5407 1.3521 NaN 1 0 Median 32879000 17246000 15632000 0 0 0 0 0 0 19664000 11117000 8547200 0 0 0 12512000 5872200 6640100 702130 256920 445210 21713 4163 22656 114722;114723;114724;114725 115682;115683;115684 115684 3 LMQITSLHSLNAFLLPIK LQRVKACTTEEDQEKLMQITSLHSLNAFLL ITSLHSLNAFLLPIKTVGVQGDCRSYSYVC K L M I K T 1 0 1 0 0 1 0 0 1 2 5 1 1 1 1 2 1 0 0 0 0 0 18 0 2038.1649 P49915 P49915 498 515 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 1.2202E-07 88.552 By matching By MS/MS 1 2 0.96671 0.85027 3.6703 3 Plateau 0.88646 0.89084 NaN 1 0 Median 0.96443 0.83937 1.8253 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7243600 3636300 3607300 1344400 706850 637560 5899200 2929500 2969700 0 0 0 0 0 0 0 0 0 0 0 0 21714 2405 22657 114726;114727;114728 115685;115686;115687 115687 3 LMQLMESEQK KLTDTLVSKQQLEQRLMQLMESEQKRVNKE QLEQRLMQLMESEQKRVNKEESLQMQVQDI R L M Q K R 0 0 0 0 0 2 2 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 10 0 1235.589 Q86UP2 Q86UP2 550 559 KTN1 Kinectin yes yes 2 0.0011397 87.308 By MS/MS By MS/MS By matching 2 2 1 1.2636 1.1272 16.448 5 Median 1.127 1.1064 14.039 2 1 Median 1.1377 0.99309 17.911 2 0 Median NaN NaN NaN 0 0 Median 1.5826 1.3279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19046000 8716000 10330000 10662000 5108900 5553500 7133600 3120900 4012700 0 0 0 1249800 486190 763580 0 0 0 0 0 0 21715 3280 22658 114729;114730;114731;114732;114733 115688;115689 115688 2 LMQLMESEQKR KLTDTLVSKQQLEQRLMQLMESEQKRVNKE LEQRLMQLMESEQKRVNKEESLQMQVQDIL R L M K R V 0 1 0 0 0 2 2 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 11 1 1391.6901 Q86UP2 Q86UP2 550 560 KTN1 Kinectin yes yes 3 4.9472E-05 100.88 By MS/MS By matching By matching 2 1 1 1.2803 1.2642 25.624 4 Median 1.2357 1.2642 16.213 2 0 Median 1.1671 1.093 NaN 1 0 Median 1.6724 1.9019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15090000 7693600 7396700 7026600 3369400 3657200 5524600 3088100 2436500 2539100 1236100 1303000 0 0 0 0 0 0 0 0 0 21716 3280 22659 114734;114735;114736;114737 115690 115690 1 LMQLVDHR LIKVLEEANQAINPKLMQLVDHRGGGGGGG NQAINPKLMQLVDHRGGGGGGGGRSRYRTT K L M H R G 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1010.5331 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 548 555 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0022672 139.31 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 0.94239 0.89596 17.212 7 Median 1.1804 1.1478 NaN 1 0 Median 0.9846 0.85207 7.1042 2 1 Median 0.94239 0.94231 NaN 1 0 Median 1.0293 0.87426 25.745 2 0 Median 0.73421 0.74006 NaN 1 0 Median NaN NaN NaN 0 0 Median 134820000 67771000 67045000 3235400 1445600 1789800 23244000 11562000 11682000 76176000 38830000 37345000 9788700 4576600 5212100 22373000 11357000 11016000 0 0 0 21717 343 22660 114738;114739;114740;114741;114742;114743;114744 115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701 115692 11 LMQQLLESDKYAER LVPAIKEDAGGMIQRLMQQLLESDKYAERK RLMQQLLESDKYAERKGAAYGLAGLVKGLG R L M E R K 1 1 0 1 0 2 2 0 0 0 3 1 1 0 0 1 0 0 1 0 0 0 14 1 1722.8611 Q92616 Q92616 1381 1394 GCN1L1 Translational activator GCN1 yes yes 2;3 3.3335E-14 136.96 By MS/MS By MS/MS By MS/MS 3 2 2 1.0887 1.0853 15.382 7 Median 1.0887 1.0853 6.3766 3 2 Plateau 1.2316 1.1502 5.4611 2 0 Median 1.0856 1.1858 30.616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107820000 50434000 57384000 70867000 34100000 36767000 20813000 9065100 11748000 16138000 7268600 8869000 0 0 0 0 0 0 0 0 0 21718 3544 22661 114745;114746;114747;114748;114749;114750;114751 115702;115703;115704;115705;115706;115707;115708;115709;115710;115711 115705 10 LMQQLLESDKYAERK LVPAIKEDAGGMIQRLMQQLLESDKYAERK LMQQLLESDKYAERKGAAYGLAGLVKGLGI R L M R K G 1 1 0 1 0 2 2 0 0 0 3 2 1 0 0 1 0 0 1 0 0 0 15 2 1850.956 Q92616 Q92616 1381 1395 GCN1L1 Translational activator GCN1 yes yes 4 0.0057182 40.008 By MS/MS 1 1.7392 1.8384 NaN 1 Median 1.7392 1.8384 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4975400 2093500 2881900 4975400 2093500 2881900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21719 3544 22662 114752 115712 115712 1 LMSALLSGLTDR LTTQCPQDLTPYSGKLMSALLSGLTDRNSV SGKLMSALLSGLTDRNSVIQKSCAFAMGHL K L M D R N 1 1 0 1 0 0 0 1 0 0 4 0 1 0 0 2 1 0 0 0 0 0 12 0 1275.6857 Q5VYK3;J3KN16 Q5VYK3 1401 1412 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0038247 45.137 By MS/MS By matching 1 1 1.1887 1.0646 0.23998 2 Median 1.1323 1.0628 NaN 1 0 Median 1.2479 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17263000 7811600 9451700 11657000 5312700 6344600 5606000 2498900 3107100 0 0 0 0 0 0 0 0 0 0 0 0 21720 3116 22663 114753;114754 115713;115714 115714 2 LMSIFPTEPSTSSVASK GNTKVLRAVHSLLSRLMSIFPTEPSTSSVA SIFPTEPSTSSVASKYEELECLYAAVGKVI R L M S K Y 1 0 0 0 0 0 1 0 0 1 1 1 1 1 2 5 2 0 0 1 0 0 17 0 1780.8917 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2200 2216 TRRAP Transformation/transcription domain-associated protein yes no 2 5.6612E-11 90.731 By MS/MS 2 0.73919 0.7904 0.33938 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73919 0.7904 0.33938 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21904000 11681000 10223000 0 0 0 0 0 0 21904000 11681000 10223000 0 0 0 0 0 0 0 0 0 21721 991 22664 114755;114756 115715;115716 115715 2 LMSNALSTVTR QVDGKIGLFRGLSPRLMSNALSTVTRGSMK LSPRLMSNALSTVTRGSMKKVFPPDEIEQV R L M T R G 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 2 2 0 0 1 0 0 11 0 1191.6282 H0Y8C3;Q9NZJ7 H0Y8C3 140 150 MTCH1 Mitochondrial carrier homolog 1 yes no 2 4.9265E-09 154.05 By MS/MS By MS/MS By matching By matching By matching 4 4 1 1 1 0.98013 0.92457 16.116 10 Median 0.96906 1.0166 7.1966 4 1 Linear 1.4089 1.1587 18.365 3 1 Plateau 0.79245 0.78349 NaN 1 0 Median 1.1285 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69708 0.66909 NaN 1 0 Median 121250000 57015000 64238000 83679000 40852000 42827000 32105000 13139000 18966000 3868100 2281900 1586200 1360400 652670 707770 0 0 0 240580 89903 150680 21722 1161 22665 114757;114758;114759;114760;114761;114762;114763;114764;114765;114766;114767 115717;115718;115719;115720;115721;115722;115723;115724;115725 115724 9 LMSSGNEESLR LTSENRDIWAELRQKLMSSGNEESLRKVDS LRQKLMSSGNEESLRKVDSAVFCLCLDDFP K L M L R K 0 1 1 0 0 0 2 1 0 0 2 0 1 0 0 3 0 0 0 0 0 0 11 0 1221.566 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 306 316 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 3.6058E-05 120.99 By MS/MS By MS/MS 1 1 1.3493 1.2411 37.299 2 Median 0.97513 0.95341 NaN 1 0 Median 1.867 1.6157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12306000 4446900 7859300 4352100 2054200 2297900 7954100 2392700 5561400 0 0 0 0 0 0 0 0 0 0 0 0 21723 317 22666 114768;114769 115726;115727;115728 115728 3 LMSTVDPK ANLNSQSLAADQLLKLMSTVDPKLNHVAAG AADQLLKLMSTVDPKLNHVAAGLVSPSLKS K L M P K L 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 1 0 0 8 0 889.4579 Q5T760;Q05519;Q5T757 Q5T760 190 197 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 0.021409 45.68 By MS/MS By matching 1 1 1.0006 0.92784 0.82685 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92176 0.92243 NaN 1 0 Median 1.0861 0.93328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20972000 10593000 10379000 0 0 0 0 0 0 20396000 10358000 10037000 576060 234180 341880 0 0 0 0 0 0 21724 2717 22667 114770;114771 115729;115730 115729 2 LMTEILGR GELNPGEDEVEGLKRLMTEILGRQDGVLQD EVEGLKRLMTEILGRQDGVLQDWVIDDCIG R L M G R Q 0 1 0 0 0 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 8 0 931.51609 O43809;H3BND3;H3BV41 O43809 124 131 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 0.0017082 143.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 3 4 1.1632 1.0914 11.824 14 Median 1.1719 1.1138 NaN 1 0 Median 1.5294 1.2931 NaN 1 0 Median 1.0472 1.0043 10.185 3 1 Plateau 1.309 1.0914 1.392 2 0 Median 1.1376 1.1581 0.91557 3 0 Median 1.2495 1.0137 11.46 4 1 Median 597160000 285720000 311440000 30949000 14344000 16605000 4453400 1768000 2685500 427830000 211610000 216220000 46708000 20024000 26684000 43811000 19725000 24086000 43412000 18255000 25157000 21725 1592 22668;22669 114772;114773;114774;114775;114776;114777;114778;114779;114780;114781;114782;114783;114784;114785;114786 115731;115732;115733;115734;115735;115736;115737;115738;115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749;115750;115751 115733 517 21 LMTPKPVSIATNR AKREKVDSQYPPVQRLMTPKPVSIATNRSV QRLMTPKPVSIATNRSVYFKPSLTPSGEFR R L M N R S 1 1 1 0 0 0 0 0 0 1 1 1 1 0 2 1 2 0 0 1 0 0 13 1 1426.7966 P49790 P49790 367 379 NUP153 Nuclear pore complex protein Nup153 yes yes 3 1.7697E-05 88.163 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 2 0.72096 0.79869 22.246 8 Median 0.67442 0.68124 NaN 1 0 Median 0.49668 0.4778 NaN 1 0 Median 0.74273 0.89037 14.052 2 0 Median 0.82175 0.79151 14.572 2 0 Median 0.74753 0.83663 7.8774 2 0 Median NaN NaN NaN 0 0 Median 36006000 20583000 15423000 4472000 2504000 1968000 858170 530840 327320 21192000 12162000 9030200 2527200 1390500 1136700 6956200 3995100 2961100 0 0 0 21726 2400 22670;22671 114787;114788;114789;114790;114791;114792;114793;114794 115752;115753;115754;115755;115756;115757 115756 1110 6 LMTQAQLEEATR TFKPAIQELKPPTYKLMTQAQLEEATRQAV TYKLMTQAQLEEATRQAVEAAKVRLKMPPV K L M T R Q 2 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 12 0 1389.6922 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3 G5E9W7 64 75 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 1.2796E-07 169.37 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.4859 1.2599 90.554 6 Median 1.0545 1.0565 NaN 1 0 Median 1.4575 1.247 129.92 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8959 1.9745 NaN 1 0 Median 1.5148 1.273 NaN 1 0 Median 55464000 24845000 30619000 34769000 17448000 17321000 13987000 4568700 9418500 0 0 0 0 0 0 5062500 2083600 2979000 1645800 745300 900510 21727 1130 22672 114795;114796;114797;114798;114799;114800 115758;115759;115760;115761 115758 4 LMVALAK LEKDIISDTSGDFRKLMVALAKGRRAEDGS DTSGDFRKLMVALAKGRRAEDGSVIDYELI K L M A K G 2 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 7 0 744.45678 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 170 176 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 1 0.062499 99.511 By MS/MS By matching By matching By matching By matching 2 2 1 2 1 1.241 1.0926 11.873 8 Median 1.3595 1.2407 8.469 2 0 Median 1.1319 0.95678 6.3447 2 0 Median 1.2427 1.1962 NaN 1 0 Median 1.2882 1.0926 4.7535 2 0 Median NaN NaN NaN 0 0 Median 1.2105 0.99124 NaN 1 0 Median 155590000 65328000 90257000 88041000 36420000 51621000 37446000 16468000 20978000 13032000 5223300 7809000 14068000 5838700 8229000 0 0 0 2998400 1378000 1620400 21728 1885 22673 114801;114802;114803;114804;114805;114806;114807;114808 115762 115762 0 LMVEFPLDPALSK LGALDNTGGLTSTGRLMVEFPLDPALSKML GRLMVEFPLDPALSKMLIVSCDMGCSSEIL R L M S K M 1 0 0 1 0 0 1 0 0 0 3 1 1 1 2 1 0 0 0 1 0 0 13 0 1458.7792 Q92620 Q92620 945 957 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 2 0.0060827 38.303 By MS/MS 1 0.77238 0.82254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77238 0.82254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1163600 686790 476800 0 0 0 0 0 0 1163600 686790 476800 0 0 0 0 0 0 0 0 0 21729 3546 22674 114809 115763 115763 1 LMVELSK ATILSMMDVDHQIAKLMVELSKSQDDEIGD DVDHQIAKLMVELSKSQDDEIGDGTTGVVV K L M S K S 0 0 0 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 7 0 818.45718 P48643;B7ZAR1;E9PCA1 P48643 90 96 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.010611 81.784 By MS/MS By MS/MS By MS/MS 2 3 1 1.1821 1.0083 30.903 6 Median 0.79533 0.74117 56.228 2 0 Median 1.2164 1.01 5.6602 3 0 Plateau 1.1738 1.1536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162890000 70133000 92756000 70581000 30650000 39930000 83895000 36412000 47483000 8413500 3070800 5342700 0 0 0 0 0 0 0 0 0 21730 2364 22675 114810;114811;114812;114813;114814;114815 115764;115765;115766;115767;115768;115769 115765 6 LMVEPLQAILIR PLMEIGELALDMWRKLMVEPLQAILIRMLL WRKLMVEPLQAILIRMLLREIKNDRGGEDP K L M I R M 1 1 0 0 0 1 1 0 0 2 3 0 1 0 1 0 0 0 0 1 0 0 12 0 1394.8319 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 163 174 CUL2 Cullin-2 yes no 2 0.00060469 69.954 By MS/MS By MS/MS By matching 1 1 1 1.0056 0.94608 15.226 3 Median 0.96492 0.94608 NaN 1 0 Median 1.0056 0.86984 NaN 1 0 Median 1.1249 1.1689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33252000 15807000 17445000 2585000 1358900 1226100 30351000 14323000 16028000 315690 125120 190570 0 0 0 0 0 0 0 0 0 21731 196 22676 114816;114817;114818 115770;115771;115772;115773 115772 4 LMVESHR AAAALRRGDYRAFGRLMVESHRSLRDDYEV GDYRAFGRLMVESHRSLRDDYEVSCPELDQ R L M H R S 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 7 0 870.43817 P51570;K7EII7 P51570 306 312 GALK1 Galactokinase yes no 2 0.053242 38.792 By matching By MS/MS 1 1 1.1112 1.0325 16.325 2 Median 0.90773 0.91994 NaN 1 0 Median 1.3603 1.1588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1864100 877820 986290 276130 137580 138550 1588000 740240 847740 0 0 0 0 0 0 0 0 0 0 0 0 21732 2434 22677 114819;114820 115774 115774 1 LMVHNWEYLGK EDQQVRYNALLAVQKLMVHNWEYLGKQLQS AVQKLMVHNWEYLGKQLQSEQPQTAAARS_ K L M G K Q 0 0 1 0 0 0 1 1 1 0 2 1 1 0 0 0 0 1 1 1 0 0 11 0 1388.6911 Q9UI12;G3V126 Q9UI12 459 469 ATP6V1H V-type proton ATPase subunit H yes no 3 0.043637 17.367 By MS/MS By matching 2 1 1.1265 1.0729 28.542 3 Median 1.3591 1.3184 29.146 2 0 Median 1.0603 0.93653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6027200 2886300 3140900 5343600 2533600 2810000 683640 352680 330960 0 0 0 0 0 0 0 0 0 0 0 0 21733 4287 22678 114821;114822;114823 115775 115775 1 LMVHTVATFNSIK DETDSKTASPWKSARLMVHTVATFNSIKEL ARLMVHTVATFNSIKELNERWRSLQQLAEE R L M I K E 1 0 1 0 0 0 0 0 1 1 1 1 1 1 0 1 2 0 0 2 0 0 13 0 1459.7857 A0A0D9SF54;Q13813 Q13813 1197 1209 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 5.6084E-79 215.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 3 2 2 1.0955 1.0445 24.539 17 Median 1.2918 1.2942 11.475 4 2 Median 1.0847 0.96453 38.846 3 1 Median 0.95202 1.0445 22.275 3 0 Median 1.3041 1.176 21.298 3 0 Plateau 1.2013 1.2572 39.065 2 1 Median 1.0001 0.83391 12.023 2 0 Median 279690000 130830000 148860000 68636000 29361000 39275000 52815000 27460000 25355000 132920000 61361000 71562000 9869000 4622000 5247000 13989000 7340900 6648100 1460500 684270 776210 21734 264;2838 22679;22680 114824;114825;114826;114827;114828;114829;114830;114831;114832;114833;114834;114835;114836;114837;114838;114839;114840 115776;115777;115778;115779;115780;115781;115782;115783;115784;115785;115786;115787;115788;115789;115790;115791;115792;115793 115779 128 18 LMVMEIR QLVHELDEAEYRDIRLMVMEIRNAYAVLYD EAEYRDIRLMVMEIRNAYAVLYDIILKNFE R L M I R N 0 1 0 0 0 0 1 0 0 1 1 0 2 0 0 0 0 0 0 1 0 0 7 0 890.47178 Q06323;H0YKK6 Q06323 214 220 PSME1 Proteasome activator complex subunit 1 yes no 2 0.0054115 97.071 By MS/MS By matching 1 1 1.1736 1.0631 16.139 2 Median 1.0145 0.94845 NaN 1 0 Median 1.3576 1.1916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31155000 15493000 15662000 30885000 15389000 15496000 269920 103600 166320 0 0 0 0 0 0 0 0 0 0 0 0 21735 2724 22681 114841;114842 115794 115794 1 LMVPVTVVFTR LPYSQISGLNALQLRLMVPVTVVFTRESVP LQLRLMVPVTVVFTRESVPLDDQEKLPFTV R L M T R E 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 2 0 0 4 0 0 11 0 1260.7264 Q96S52 Q96S52 61 71 PIGS GPI transamidase component PIG-S yes yes 2 0.0022363 54.608 By MS/MS 1 1.1273 0.97862 NaN 1 Median NaN NaN NaN 0 0 Median 1.1273 0.97862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3268300 1470700 1797600 0 0 0 3268300 1470700 1797600 0 0 0 0 0 0 0 0 0 0 0 0 21736 3729 22682 114843 115795 115795 1 LMVQAVNQR IMAANPQGRISCTGRLMVQAVNQRGRSPRS ISCTGRLMVQAVNQRGRSPRSPSGHPHVRR R L M Q R G 1 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 9 0 1057.5702 Q8WX93 Q8WX93 1090 1098 PALLD Palladin yes yes 2 0.00085343 94.262 By MS/MS By MS/MS 1 1 1.3601 1.2456 25.8 2 Median 1.5444 1.4949 NaN 1 0 Median 1.1978 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7443500 3633400 3810200 3640100 1640000 2000100 3803400 1993300 1810100 0 0 0 0 0 0 0 0 0 0 0 0 21737 3515 22683 114844;114845 115796;115797;115798;115799 115798 4 LMVSMLDR GIAGGYKPFNLETCRLMVSMLDRDMSGTMG FNLETCRLMVSMLDRDMSGTMGFNEFKELW R L M D R D 0 1 0 1 0 0 0 0 0 0 2 0 2 0 0 1 0 0 0 1 0 0 8 0 963.48816 C9J0K6;P30626;B4DHQ6 C9J0K6 34 41 SRI Sorcin yes no 2 0.079203 28.512 By matching By MS/MS By matching 1 2 1 1.3163 1.1059 18.374 4 Median 1.0229 0.97151 NaN 1 0 Median 1.3163 1.1059 10.657 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5213 1.4645 NaN 1 0 Median 31292000 15290000 16002000 19537000 9952000 9584800 11005000 5043900 5960800 0 0 0 0 0 0 0 0 0 750390 293700 456690 21738 669 22684 114846;114847;114848;114849 115800 115800 1 LMVVTPAGHSDVK ARELGVLVFENSAKRLMVVTPAGHSDVKRF KRLMVVTPAGHSDVKRFWKRQKHSS_____ R L M V K R 1 0 0 1 0 0 0 1 1 0 1 1 1 0 1 1 1 0 0 3 0 0 13 0 1352.7122 Q92759 Q92759 440 452 GTF2H4 General transcription factor IIH subunit 4 yes yes 3 0.0032612 49.298 By MS/MS 1 1.0614 1.0348 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0614 1.0348 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7546500 2493000 5053500 0 0 0 0 0 0 7546500 2493000 5053500 0 0 0 0 0 0 0 0 0 21739 3553 22685 114850 115801 115801 1 LNAALATPAK GCQKYFYRSLARHARLNAALATPAKEMGMG ARHARLNAALATPAKEMGMGNVERCRGFSA R L N A K E 4 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 10 0 968.56548 Q9NU22 Q9NU22 4206 4215 MDN1 Midasin yes yes 2 0.00228 60.828 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.99693 0.91786 8.283 4 Median NaN NaN NaN 0 0 Median 1.0028 0.87834 NaN 1 0 Median 0.88338 0.95915 NaN 1 0 Median 1.1099 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99106 0.84955 NaN 1 0 Median 6440200 3208400 3231900 0 0 0 1911600 895170 1016500 3092500 1576200 1516300 324820 159830 164980 0 0 0 1111300 577130 534140 21740 4112 22686 114851;114852;114853;114854 115802;115803;115804;115805 115805 4 LNADVLKTAEK QERLYVNSEKQLIQRLNADVLKTAEKLYRT LIQRLNADVLKTAEKLYRTAWIAKQQRINL R L N E K L 2 0 1 1 0 0 1 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1200.6714 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;C9IZX9 Q14C86 30 40 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 0.056275 16.137 By MS/MS By matching 1 1 1.019 0.98472 23.349 2 Median 1.1404 1.1615 NaN 1 0 Median 0.91044 0.83485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3480800 1614100 1866700 2475700 1127200 1348400 1005100 486900 518230 0 0 0 0 0 0 0 0 0 0 0 0 21741 2907 22687 114855;114856 115806 115806 1 LNAEENDKLYK TFDDSFKEKEILQIKLNAEENDKLYKVLQN LQIKLNAEENDKLYKVLQNMVLELSPKELD K L N Y K V 1 0 2 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1335.667 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3125 3135 SYNE2 Nesprin-2 yes no 3 0.05927 15.372 By MS/MS By matching By matching 1 1 1 1.2248 1.1435 9.7245 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90162 1.025 NaN 1 0 Median 1.2248 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2814 1.1435 NaN 1 0 Median 4206200 2215900 1990200 0 0 0 0 0 0 2215600 1217200 998490 1078800 513950 564800 0 0 0 911790 484840 426950 21742 3521 22688 114857;114858;114859 115807 115807 1 LNAFGNAFLNR PGNALVVDPRRPFRKLNAFGNAFLNRFMCA PFRKLNAFGNAFLNRFMCAQLPNPVLDSIS K L N N R F 2 1 3 0 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 11 0 1235.6411 A0A024R571;Q9H4M9;C9JC03;C9JIJ3;C9IZH1 A0A024R571 139 149 EHD1 EH domain-containing protein 1 no no 2 0.00020562 101.64 By MS/MS 1 1.5788 1.6013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5788 1.6013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7879900 2882300 4997600 0 0 0 0 0 0 7879900 2882300 4997600 0 0 0 0 0 0 0 0 0 21743 5 22689 114860 115808;115809 115808 2 LNAILFK QFGVVMGTVPRLRPRLNAILFKLQFSEQVE TVPRLRPRLNAILFKLQFSEQVENIKPEIV R L N F K L 1 0 1 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 817.50617 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 937 943 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.003648 103.29 By MS/MS By matching By matching By matching 1 1 1 1 1.2851 1.1735 9.1329 4 Median 1.1687 1.1252 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.288 1.38 NaN 1 0 Median 1.2823 1.1536 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3852 1.1937 NaN 1 0 Median 8823600 4154300 4669300 6483000 3078500 3404500 0 0 0 1549900 756630 793270 331400 134910 196490 0 0 0 459250 184280 274970 21744 274 22690 114861;114862;114863;114864 115810 115810 1 LNAIYQNNLTK NWRVIKEKRDAYVSRLNAIYQNNLTKSHIE YVSRLNAIYQNNLTKSHIEIIRGHAAFTSD R L N T K S 1 0 3 0 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 11 0 1290.6932 P00390;A0A2R8YF59;H0YC68 P00390 154 164 GSR Glutathione reductase, mitochondrial yes no 2 0.00011206 123.88 By MS/MS By MS/MS 1 1 1.1953 1.0555 2.9018 2 Median 1.1223 1.034 NaN 1 0 Median 1.2731 1.0773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49924000 22330000 27594000 29786000 13658000 16128000 20139000 8672300 11466000 0 0 0 0 0 0 0 0 0 0 0 0 21745 1817 22691 114865;114866 115811;115812;115813;115814 115814 4 LNALGFSLEQR ELNQLKNENRMLKDRLNALGFSLEQRLDNS LKDRLNALGFSLEQRLDNSEKLFGYQSLSP R L N Q R L 1 1 1 0 0 1 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 11 0 1246.667 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 290 300 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 2 0.011706 57.55 By MS/MS 1 0.62117 0.68192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62117 0.68192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2992000 1751500 1240500 0 0 0 0 0 0 2992000 1751500 1240500 0 0 0 0 0 0 0 0 0 21746 469 22692 114867 115815 115815 1 LNALLEPGGVLTISER LMDNVNFCNPSVLDRLNALLEPGGVLTISE NALLEPGGVLTISERGMIDGSTPTITPNPN R L N E R G 1 1 1 0 0 0 2 2 0 1 4 0 0 0 1 1 1 0 0 1 0 0 16 0 1680.941 Q9NU22 Q9NU22 2255 2270 MDN1 Midasin yes yes 2 7.0748E-05 76.655 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.0595 0.95314 8.7508 5 Median 1.0646 1.0665 NaN 1 0 Median 0.99453 0.83756 NaN 1 0 Median 0.87116 0.95314 NaN 1 0 Median 1.089 0.94544 3.7018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9596700 4867300 4729400 1170600 533480 637070 4973800 2446200 2527600 3240300 1797100 1443200 212050 90493 121560 0 0 0 0 0 0 21747 4112 22693 114868;114869;114870;114871;114872 115816;115817;115818;115819 115819 4 LNALLHALNEVDPGDWQK DDDNTQNQEKEMLLRLNALLHALNEVDPGD LLHALNEVDPGDWQKFVKKGLKFRYQDHTF R L N Q K F 2 0 2 2 0 1 1 1 1 0 4 1 0 0 1 0 0 1 0 1 0 0 18 0 2032.0378 O60287 O60287 1415 1432 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 0.057443 8.9317 By matching By MS/MS 1 1 1.5357 1.4819 43.497 2 Median NaN NaN NaN 0 0 Median 2.4012 2.0156 NaN 1 0 Median 0.98219 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3009900 1376100 1633800 0 0 0 1835800 700080 1135700 1174100 676050 498090 0 0 0 0 0 0 0 0 0 21748 1610 22694 114873;114874 115820;115821 115820 2 LNARPGVGGVR LDELIRKRGAAAKGRLNARPGVGGVRSRVG AKGRLNARPGVGGVRSRVGIQQGLLSQSTR R L N V R S 1 2 1 0 0 0 0 3 0 0 1 0 0 0 1 0 0 0 0 2 0 0 11 1 1094.6309 F6VRR5;Q9BY77;F8WCX5;Q6R954;Q8WUT1;F8WEE2 F6VRR5 21 31 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 no no 2 0.031538 43.808 By MS/MS 1 0.89235 0.96616 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89235 0.96616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3566800 1890000 1676900 0 0 0 0 0 0 3566800 1890000 1676900 0 0 0 0 0 0 0 0 0 21749 1051;3496 22695 114875 115822 115822 1 LNATASLEQER CPQPPPAPQPQARSRLNATASLEQERSERP ARSRLNATASLEQERSERPRAPGPQAGPGP R L N E R S 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1230.6204 O76024 O76024 27 37 WFS1 Wolframin yes yes 2 1.137E-09 128.6 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21750 1717 22696 114876;114877 115823;115824 115823 2 LNATNIELATVQPGQNFHMFTK IKSSLIILKQVMEEKLNATNIELATVQPGQ LATVQPGQNFHMFTKEELEEVIKDI_____ K L N T K E 2 0 3 0 0 2 1 1 1 1 2 1 1 2 1 0 3 0 0 1 0 0 22 0 2473.2424 P28066 P28066 210 231 PSMA5 Proteasome subunit alpha type-5 yes yes 3 2.8804E-13 83.723 By MS/MS By matching 1 1 0.9831 0.86946 7.1193 2 Median 0.98908 0.91435 NaN 1 0 Median 0.97715 0.82678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41727000 20634000 21093000 39207000 19567000 19641000 2519400 1067500 1451900 0 0 0 0 0 0 0 0 0 0 0 0 21751 2159 22697 114878;114879 115825;115826 115826 2 LNDFASTVR PEPKIIDAALRACRRLNDFASTVRILEVVK LRACRRLNDFASTVRILEVVKDKAGPHKEI R L N V R I 1 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1021.5193 P20674;H3BRM5;H3BV69;H3BNX8 P20674 99 107 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2 5.7767E-32 210.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 2 0.97826 0.94344 19.387 9 Median 0.87614 0.83395 17.446 2 0 Median 1.3644 1.1686 10.001 3 0 Median 0.86576 0.87853 NaN 1 1 Median 1.2659 0.9967 NaN 1 0 Median 0.74131 0.7688 11.462 2 0 Median NaN NaN NaN 0 0 Median 277780000 127060000 150720000 145420000 71166000 74250000 121330000 50035000 71293000 5548600 2976000 2572600 2328200 1006300 1321800 3156100 1875900 1280200 0 0 0 21752 2083 22698 114880;114881;114882;114883;114884;114885;114886;114887;114888;114889 115827;115828;115829;115830;115831;115832;115833;115834;115835 115828 9 LNDGNEYLFQAK VALDYKKKKHVFKLRLNDGNEYLFQAKDDE KLRLNDGNEYLFQAKDDEEMNTWIQAISSA R L N A K D 1 0 2 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1410.6779 Q01082;A0A087WUZ3 Q01082 2279 2290 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 5.6046E-05 125.75 By MS/MS By MS/MS By MS/MS 1 1 1 1.0476 1.1002 11.414 3 Median NaN NaN NaN 0 0 Median 1.3261 1.1793 NaN 1 0 Median 1.0004 1.1002 NaN 1 0 Median 1.0476 0.94351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53181000 25532000 27649000 0 0 0 14610000 6233100 8376900 32636000 16510000 16127000 5934900 2789600 3145300 0 0 0 0 0 0 21753 2681 22699 114890;114891;114892 115836;115837;115838;115839;115840;115841 115837 6 LNDGSQITYEK GKKVVQLDVRDNMVKLNDGSQITYEKCLIA NMVKLNDGSQITYEKCLIATGGTPRSLSAI K L N E K C 0 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 0 1266.6092 O95831 O95831 245 255 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.00015099 115.78 By MS/MS By MS/MS By matching 1 1 1 1.2754 1.1327 18.714 3 Plateau 1.0594 0.99788 NaN 1 0 Median 1.5355 1.2857 NaN 1 0 Median 0.88118 0.89231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23604000 9766900 13837000 10291000 4653500 5637400 12225000 4546800 7678000 1088000 566610 521370 0 0 0 0 0 0 0 0 0 21754 1797 22700 114893;114894;114895 115842;115843;115844 115844 3 LNDLEDALQQAK AEQRGENALKDAKNKLNDLEDALQQAKEDL KNKLNDLEDALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 2 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1356.6885 P04264;CON__P04264 P04264 444 455 KRT1 Keratin, type II cytoskeletal 1 yes no 2 3.2604E-31 177.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 2 4 1 0.045119 0.04509 102.07 17 Median 0.1331 0.12602 20.566 2 2 Median 0.043144 0.036256 17.77 3 3 Median 0.065127 0.067219 116.89 5 5 Median 0.013965 0.012154 185.41 2 2 Median 0.044727 0.047257 54.723 4 4 Median 0.043513 0.035747 NaN 1 1 Median 261560000 238840000 22712000 20069000 16809000 3259800 12033000 11420000 612870 102400000 91494000 10911000 30745000 30276000 468570 64991000 59275000 5715300 31314000 29569000 1745200 + 21755 1848 22701 114896;114897;114898;114899;114900;114901;114902;114903;114904;114905;114906;114907;114908;114909;114910;114911;114912 115845;115846;115847;115848;115849;115850;115851;115852;115853;115854;115855;115856;115857;115858;115859;115860;115861;115862 115860 18 LNDLEDALQQAKEDLAR AEQRGENALKDAKNKLNDLEDALQQAKEDL DLEDALQQAKEDLARLLRDYQELMNTKLAL K L N A R L 3 1 1 3 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 17 1 1940.9803 P04264;CON__P04264 P04264 444 460 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 4.0182E-19 130.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 1 1 0.074869 0.070298 152.92 5 Median 0.25731 0.25828 194.95 3 3 Median 0.074869 0.070298 NaN 1 1 Median 0.03907 0.044568 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72625000 70176000 2448700 19375000 17016000 2359000 3741200 3683700 57477 3671100 3639000 32133 0 0 0 13347000 13347000 0 32491000 32491000 0 + 21756 1848 22702 114913;114914;114915;114916;114917;114918;114919;114920;114921 115863;115864;115865;115866;115867;115868;115869;115870;115871;115872 115872 10 LNDLEEALQQAK AEQRGEHALKDARNKLNDLEEALQQAKEDL RNKLNDLEEALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1370.7042 CON__P35908;CON__P35908v2;P35908 CON__P35908 448 459 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.7752E-51 197.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 5 2 0.060804 0.062308 170.4 14 Median 0.11525 0.11197 45.485 2 2 Median 0.026779 0.023894 NaN 1 1 Median 0.096508 0.093649 71.329 4 4 Median 0.015922 0.014368 84.215 5 5 Median 0.65668 0.70646 198 2 2 Median NaN NaN NaN 0 0 Median 136700000 114800000 21899000 14091000 12285000 1805600 28928000 28224000 704530 26716000 23878000 2838300 35467000 34801000 666330 31496000 15611000 15885000 0 0 0 + 21757 764;765 22703 114922;114923;114924;114925;114926;114927;114928;114929;114930;114931;114932;114933;114934;114935 115873;115874;115875;115876;115877;115878;115879;115880;115881;115882;115883;115884;115885;115886 115882 14 LNDLEEALQQAKEDLAR AEQRGEHALKDARNKLNDLEEALQQAKEDL DLEEALQQAKEDLARLLRDYQELMNVKLAL K L N A R L 3 1 1 2 0 2 3 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 17 1 1954.996 CON__P35908;CON__P35908v2;P35908 CON__P35908 448 464 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 6.1377E-13 103.61 By MS/MS By MS/MS 1 1 0.26484 0.26448 6.4488 2 Median 0.26898 0.27681 NaN 1 1 Median 0.26075 0.25269 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6073900 5076400 997460 4614100 3927500 686580 1459900 1149000 310880 0 0 0 0 0 0 0 0 0 0 0 0 + 21758 764;765 22704 114936;114937 115887;115888 115888 2 LNDLIQR KDAGLKNGVPAVGLKLNDLIQRLQLCYQLT GVPAVGLKLNDLIQRLQLCYQLTTVGKFEE K L N Q R L 0 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 870.49232 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1003 1009 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.009327 84.244 By matching By MS/MS 1 2 0.95006 0.78969 34.345 3 Median 0.64749 0.63291 NaN 1 0 Median 1.1642 0.99018 31.997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23596000 11187000 12408000 2770400 1276900 1493600 20825000 9910600 10915000 0 0 0 0 0 0 0 0 0 0 0 0 21759 2473 22705 114938;114939;114940 115889 115889 1 LNDMASTDDGTLQSR KTSQSWVERGRGLLRLNDMASTDDGTLQSR LNDMASTDDGTLQSRLVMRTQGSLRLILNT R L N S R L 1 1 1 3 0 1 0 1 0 0 2 0 1 0 0 2 2 0 0 0 0 0 15 0 1622.7206 B7Z7F3;Q9H6Z4;K7EIJ4 B7Z7F3 355 369 RANBP3 Ran-binding protein 3 yes no 2 3.6931E-09 136.7 By MS/MS By MS/MS 1 1 1.0052 0.91372 6.5305 2 Median 1.0023 0.9569 NaN 1 0 Median 1.0082 0.87249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16148000 7990700 8156900 9489300 4665600 4823700 6658300 3325100 3333200 0 0 0 0 0 0 0 0 0 0 0 0 21760 636 22706 114941;114942 115890;115891;115892;115893 115890 4 LNDMEPSK SKLRCVFEMPNENDKLNDMEPSKAVPLNAS MPNENDKLNDMEPSKAVPLNASKQDGPMPK K L N S K A 0 0 1 1 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 8 0 932.42733 Q9P0L0 Q9P0L0 139 146 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2 0.047416 35.295 By MS/MS By matching 1 1 0.94807 0.86915 4.5361 2 Median 0.84971 0.84172 NaN 1 0 Median 1.0578 0.89748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1338400 607160 731260 683920 303790 380130 654490 303370 351130 0 0 0 0 0 0 0 0 0 0 0 0 21761 4205 22707 114943;114944 115894 115894 1 LNDMYGDYK VECCPVLLGPPLLGRLNDMYGDYKYTYWAC PPLLGRLNDMYGDYKYTYWACGVVLIISGI R L N Y K Y 0 0 1 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 9 0 1117.475 P53985;Q5T8R5 P53985 412 420 SLC16A1 Monocarboxylate transporter 1 yes no 2 0.001917 76.221 By MS/MS 1 1.2763 1.1151 NaN 1 Median NaN NaN NaN 0 0 Median 1.2763 1.1151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5561100 2597100 2964000 0 0 0 5561100 2597100 2964000 0 0 0 0 0 0 0 0 0 0 0 0 21762 2476 22708 114945 115895 115895 1 LNDSILQATEQR RLSRENRDLKDEIVRLNDSILQATEQRRRA IVRLNDSILQATEQRRRAEENALQQKACGS R L N Q R R 1 1 1 1 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1386.7103 P15924 P15924 1256 1267 DSP Desmoplakin yes yes 2 1.0362E-14 185.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 3 0.95129 0.90719 31.792 11 Median 0.94609 0.92039 NaN 1 0 Median 1.2125 1.0018 14.03 2 0 Median 0.47609 0.51089 8.8002 2 1 Median 1.0915 0.9545 20.02 2 0 Median 0.66873 0.68423 NaN 1 0 Median 1.2501 1.0382 37.218 3 0 Median 85700000 48121000 37579000 20536000 10292000 10244000 16176000 7795700 8380700 22316000 15405000 6911300 4355000 2196300 2158700 16655000 9662500 6992900 5660800 2769800 2891000 21763 2021 22709 114946;114947;114948;114949;114950;114951;114952;114953;114954;114955;114956 115896;115897;115898;115899;115900;115901;115902;115903;115904;115905;115906;115907;115908;115909 115897 14 LNDSILQATEQRR RLSRENRDLKDEIVRLNDSILQATEQRRRA VRLNDSILQATEQRRRAEENALQQKACGSE R L N R R R 1 2 1 1 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 13 1 1542.8114 P15924 P15924 1256 1268 DSP Desmoplakin yes yes 3 5.0774E-05 80.96 By MS/MS By matching 1 1 1.1282 1.0993 14.537 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91698 0.99196 NaN 1 0 Median 1.3881 1.2184 NaN 1 0 Median 14353000 6785500 7567700 0 0 0 0 0 0 0 0 0 0 0 0 11841000 5766500 6074700 2512000 1019000 1493000 21764 2021 22710 114957;114958 115910 115910 1 LNDTIQLLVR KQMEDGHTLFDYEVRLNDTIQLLVRQSLVL DYEVRLNDTIQLLVRQSLVLPHSTKERDSE R L N V R Q 0 1 1 1 0 1 0 0 0 1 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1183.6925 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 78 87 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.00039551 78.334 By MS/MS By matching By MS/MS By matching 2 2 6 1 0.89893 0.8874 13.239 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86559 0.90491 10.001 2 0 Median 1.1593 1.0112 31.845 2 0 Median 0.86871 0.90121 7.7612 6 0 Median 0.96013 0.84329 NaN 1 0 Median 26250000 14212000 12038000 0 0 0 0 0 0 9566900 5434600 4132300 1529500 711180 818270 14719000 7845300 6873900 434610 221170 213440 21765 20 22711 114959;114960;114961;114962;114963;114964;114965;114966;114967;114968;114969 115911;115912;115913;115914;115915;115916;115917 115911 7 LNEAAAGLNQAATELVQASR SLPPSTGTFQEAQSRLNEAAAGLNQAATEL AGLNQAATELVQASRGTPQDLARASGRFGQ R L N S R G 6 1 2 0 0 2 2 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 20 0 2026.0443 Q9Y490 Q9Y490 1242 1261 TLN1 Talin-1 yes yes 2;3 1.3643E-18 110.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 1 1.1844 1.0302 32.377 12 Median 0.90436 0.84872 1.394 2 0 Median 1.2103 1.0117 10.325 4 1 Median 1.1915 1.3076 4.9492 3 2 Plateau 1.1623 1.0214 2.8955 2 0 Median 2.6425 2.7754 NaN 1 0 Median NaN NaN NaN 0 0 Median 66172000 31127000 35045000 39018000 19487000 19532000 7045300 3275800 3769500 16209000 7130000 9078900 1107100 489390 617670 2792600 745300 2047300 0 0 0 21766 4441 22712 114970;114971;114972;114973;114974;114975;114976;114977;114978;114979;114980;114981 115918;115919;115920;115921;115922;115923;115924;115925;115926;115927;115928;115929;115930;115931;115932 115918 15 LNEAKEEFTSGGPLGQK SVIRLQKKVMELESKLNEAKEEFTSGGPLG EAKEEFTSGGPLGQKRDPKEWIPRPPEKYA K L N Q K R 1 0 1 0 0 1 3 3 0 0 2 2 0 1 1 1 1 0 0 0 0 0 17 1 1803.9003 P43034 P43034 72 88 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 3 7.9003E-13 150.39 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.80407 0.81949 12.995 7 Median 0.8376 0.85602 17.656 2 0 Median 0.93598 0.88749 22.556 2 0 Median 0.72888 0.79537 4.2259 2 0 Median 0.96081 0.9126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62147000 30995000 31151000 23298000 11967000 11332000 16651000 7272000 9379200 10116000 5613500 4502300 12082000 6143400 5938200 0 0 0 0 0 0 21767 2321 22713 114982;114983;114984;114985;114986;114987;114988 115933;115934;115935;115936;115937;115938;115939;115940;115941 115940 9 LNEAQPSTIATSMR DTTSTELSVVESVFKLNEAQPSTIATSMRD KLNEAQPSTIATSMRDSLIDSLT_______ K L N M R D 2 1 1 0 0 1 1 0 0 1 1 0 1 0 1 2 2 0 0 0 0 0 14 0 1517.7508 P56537;A0A0U1RQV5 P56537 224 237 EIF6 Eukaryotic translation initiation factor 6 yes no 2 1.2687E-07 161.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 2 0.99323 0.9155 11.425 12 Median 0.99176 0.94179 4.7975 2 0 Median 1.0879 0.921 0.6025 2 1 Median 1.0799 1.0361 17.749 2 0 Median 0.91253 0.75834 NaN 1 0 Median 0.85364 0.86785 11.913 3 0 Median 1.1303 0.90972 4.945 2 0 Median 340880000 169240000 171640000 145750000 72200000 73552000 36149000 16603000 19546000 32173000 15276000 16898000 7312700 4018100 3294600 104910000 54191000 50719000 14584000 6954100 7629500 21768 2513 22714;22715 114989;114990;114991;114992;114993;114994;114995;114996;114997;114998;114999;115000 115942;115943;115944;115945;115946;115947;115948;115949;115950;115951;115952;115953;115954;115955;115956;115957;115958;115959;115960;115961;115962;115963 115960 1192 22 LNEEIER SRALSNSNRDKEIKKLNEEIERLKNKIADS NRDKEIKKLNEEIERLKNKIADSNRLERQL K L N E R L 0 1 1 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 0 901.45051 Q9Y5S2 Q9Y5S2 490 496 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 2 0.044333 55.676 By MS/MS 1 1.0183 1.0097 NaN 1 Median 1.0183 1.0097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1505100 774860 730280 1505100 774860 730280 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21769 4468 22716 115001 115964 115964 1 LNEGFISQNDRR FANDASSMLASAVEKLNEGFISQNDRRFVI VEKLNEGFISQNDRRFVIQLLEDLVFFVSD K L N R R F 0 2 2 1 0 1 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 12 1 1447.7168 Q14573 Q14573 459 470 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 3 0.00011385 77.593 By matching By MS/MS 1 1 1.4392 1.4525 1.284 2 Median 1.3245 1.4394 NaN 1 0 Median 1.5639 1.4658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11258000 3969700 7288800 2710300 641170 2069100 8548200 3328500 5219600 0 0 0 0 0 0 0 0 0 0 0 0 21770 2883 22717 115002;115003 115965 115965 1 LNEGVVEFASYGDLK RQAGEVTFADAHRPKLNEGVVEFASYGDLK LNEGVVEFASYGDLKNAIEKLSGKEINGRK K L N L K N 1 0 1 1 0 0 2 2 0 0 2 1 0 1 0 1 0 0 1 2 0 0 15 0 1639.8094 Q13243 Q13243 144 158 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 2 1.9303E-05 72.089 By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1.0375 0.99883 11.811 6 Median 0.92427 0.86583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1007 1.142 14.946 3 2 Plateau 1.192 0.99558 NaN 1 0 Median 1.0017 1.0021 NaN 1 0 Median NaN NaN NaN 0 0 Median 33911000 16226000 17685000 3365300 1723800 1641600 0 0 0 21368000 9833000 11535000 109280 55353 53930 9067500 4613600 4454000 0 0 0 21771 2800 22718 115004;115005;115006;115007;115008;115009 115966;115967;115968;115969;115970;115971;115972;115973 115968 8 LNEHFLNTTDFLDTIK TKDLAGCIHGLSNVKLNEHFLNTTDFLDTI NEHFLNTTDFLDTIKSNLDRALGRQ_____ K L N I K S 0 0 2 2 0 0 1 0 1 1 3 1 0 2 0 0 3 0 0 0 0 0 16 0 1919.9629 P48735;H0YL11 P48735 427 442 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 3 0.057759 9.9211 By matching By matching By MS/MS By matching 2 2 1 1 0.87831 0.83711 44.903 6 Median 0.80493 0.77207 10.134 2 0 Median 0.93729 0.83625 84.271 2 0 Median 0.87064 0.84488 NaN 1 0 Median 1.6239 1.4481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27121000 13192000 13929000 8242100 4186900 4055300 7850600 3495000 4355700 9673900 4990600 4683300 1354000 519330 834650 0 0 0 0 0 0 21772 2367 22719 115010;115011;115012;115013;115014;115015 115974 115974 1 LNEILQAR FAKGTEITHAVVIKKLNEILQARGKKGTDR HAVVIKKLNEILQARGKKGTDRAAQIELLQ K L N A R G 1 1 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 955.54508 Q99613;B5ME19 Q99613 333 340 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.00091024 96.492 By MS/MS By MS/MS 2 1 1.2075 1.1531 8.6566 3 Plateau 1.1872 1.1623 1.1197 2 2 Median 1.2075 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32802000 15517000 17285000 7443300 3368400 4074900 25359000 12149000 13210000 0 0 0 0 0 0 0 0 0 0 0 0 21773 3757 22720 115016;115017;115018 115975;115976;115977 115975 3 LNEIVDQIK ______________________________ TAVQEKLNEIVDQIKTRREEEKKQKEKEAE K L N I K T 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1070.5972 E5RJE3;E5RGS5;E5RGQ3;Q9H446 E5RJE3 15 23 RWDD1 RWD domain-containing protein 1 yes no 2 0.0026911 70.256 By MS/MS By MS/MS 1 1 1.2368 1.0875 6.7395 2 Median 1.2387 1.1406 NaN 1 0 Median 1.235 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18612000 8352500 10259000 12531000 5769800 6761600 6080200 2582800 3497500 0 0 0 0 0 0 0 0 0 0 0 0 21774 839 22721 115019;115020 115978;115979;115980 115978 3 LNEIVGNEDTVSR GHYELPWVEKYRPVKLNEIVGNEDTVSRLE VKLNEIVGNEDTVSRLEVFAREGNVPNIII K L N S R L 0 1 2 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7158 P35250;H7C5P1;H7C5Q7;F8WC37;H7C5A0;H7C5G4;H7C5S7 P35250 47 59 RFC2 Replication factor C subunit 2 yes no 2 6.9887E-10 170.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1.1275 1.0128 10.752 8 Median 0.98347 0.98124 NaN 1 0 Median 1.1275 0.96757 3.8254 2 0 Median 1.0075 1.0398 3.5086 2 0 Median 1.2027 1.0114 NaN 1 0 Median 1.2041 1.2463 1.7376 2 2 Median NaN NaN NaN 0 0 Median 91619000 40217000 51402000 14256000 5306200 8949500 12597000 5238700 7358500 42045000 20419000 21626000 10937000 4748200 6189100 11783000 4504400 7278900 0 0 0 21775 2238 22722 115021;115022;115023;115024;115025;115026;115027;115028 115981;115982;115983;115984;115985;115986;115987;115988;115989;115990;115991;115992 115985 12 LNELLVK IAAGLVDDPRAMVGRLNELLVKALERH___ DPRAMVGRLNELLVKALERH__________ R L N V K A 0 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 827.51165 I3L0K7;I3L253;Q12931 Q12931 693 699 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.002489 116.54 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.1063 1.0159 19.417 8 Median 1.101 1.0255 27.523 2 1 Median 1.3122 1.0917 24.269 3 0 Median 1.0278 1.0703 17.56 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0444 0.923 NaN 1 0 Median 79497000 38162000 41335000 30543000 16367000 14176000 43159000 18961000 24198000 5506200 2674500 2831700 0 0 0 0 0 0 288950 159880 129070 21776 2771;1269 22723 115029;115030;115031;115032;115033;115034;115035;115036 115993;115994;115995;115996;115997;115998 115998 6 LNELMSQIR TIQGELNAPTQFKGRLNELMSQIRMQNHFG TQFKGRLNELMSQIRMQNHFGAVRSEERYY R L N I R M 0 1 1 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 9 0 1102.5805 Q7Z3B4 Q7Z3B4 431 439 NUP54 Nucleoporin p54 yes yes 2 0.00071783 102.51 By matching By matching By MS/MS By matching 1 1 2 2 1.3166 1.1289 28.193 6 Median 0.60413 0.601 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0014 0.99185 NaN 1 0 Median 1.3166 1.1289 3.1549 2 0 Median NaN NaN NaN 0 0 Median 1.518 1.2679 4.0961 2 0 Median 41558000 19764000 21795000 2927500 1553800 1373700 0 0 0 28656000 13662000 14994000 7330900 3477500 3853400 0 0 0 2644200 1070200 1574000 21777 3239 22724;22725 115037;115038;115039;115040;115041;115042 115999;116000;116001;116002 116001 1692 4 LNENHSGELWK KHSGIDFKQLNFLTKLNENHSGELWKGRWQ FLTKLNENHSGELWKGRWQGNDIVVKVLKV K L N W K G 0 0 2 0 0 0 2 1 1 0 2 1 0 0 0 1 0 1 0 0 0 0 11 0 1325.6364 Q13418;A0A0A0MTH3 Q13418 199 209 ILK Integrin-linked protein kinase yes no 3 0.003864 37.144 By matching By MS/MS By matching By matching 1 1 2 1 1.041 0.9026 6.9406 5 Median NaN NaN NaN 0 0 Median 1.0096 0.8908 NaN 1 0 Median 1.041 1.0115 NaN 1 0 Median 1.0171 0.89435 1.2982 2 0 Median NaN NaN NaN 0 0 Median 1.199 1.015 NaN 1 0 Median 18099000 8443400 9656000 0 0 0 718770 300030 418740 8915200 4361100 4554000 7384800 3372800 4012000 0 0 0 1080700 409450 671220 21778 190 22726 115043;115044;115045;115046;115047 116003;116004 116004 2 LNEQASEEILK EAIEHIDEVQNEIDRLNEQASEEILKVEQK EIDRLNEQASEEILKVEQKYNKLRQPFFQK R L N L K V 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1272.6561 Q01105;A0A0C4DFV9 Q01105 58 68 SET Protein SET yes no 2 0.00013593 144.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 3 1 1 1.1405 0.99215 28.502 12 Median 1.7673 1.631 64.634 2 0 Median 1.1844 0.99294 10.808 4 1 Median 1.0428 1.007 NaN 1 0 Median 1.1336 0.96379 1.3209 3 0 Median 1.2116 1.1985 NaN 1 0 Median 1.0605 0.89202 NaN 1 0 Median 283370000 126660000 156710000 41621000 18246000 23374000 128720000 56494000 72226000 84902000 39199000 45703000 25038000 11189000 13849000 2022800 988020 1034700 1070300 542220 528070 21779 2683 22727 115048;115049;115050;115051;115052;115053;115054;115055;115056;115057;115058;115059 116005;116006;116007;116008;116009;116010;116011;116012;116013;116014;116015;116016;116017 116008 13 LNEQASEEILKVEQK EAIEHIDEVQNEIDRLNEQASEEILKVEQK LNEQASEEILKVEQKYNKLRQPFFQKRSEL R L N Q K Y 1 0 1 0 0 2 4 0 0 1 2 2 0 0 0 1 0 0 0 1 0 0 15 1 1756.9207 Q01105;A0A0C4DFV9 Q01105 58 72 SET Protein SET yes no 2;3 6.1414E-09 128.68 By MS/MS By MS/MS By MS/MS By MS/MS 2 7 3 2 1.1242 1.0456 22.943 14 Median 0.97844 0.90633 9.4482 2 0 Median 1.1538 1.0532 30.142 7 0 Median 1.0268 1.076 15.889 3 0 Median 1.15 1.0241 1.92 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 139020000 64735000 74281000 53486000 25554000 27932000 30849000 13562000 17287000 43919000 20752000 23167000 10761000 4867000 5893900 0 0 0 0 0 0 21780 2683 22728 115060;115061;115062;115063;115064;115065;115066;115067;115068;115069;115070;115071;115072;115073 116018;116019;116020;116021;116022;116023;116024;116025;116026;116027;116028;116029;116030;116031 116020 14 LNEQHQLILSK ______________________________ KAQKLNEQHQLILSKLLREEDNKYCADCEA K L N S K L 0 0 1 0 0 2 1 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1321.7354 Q8IYB5 Q8IYB5 13 23 SMAP1 Stromal membrane-associated protein 1 yes yes 2;3 0.00020825 100.48 By matching By matching By MS/MS 1 1 3 0.84616 0.8292 14.022 5 Median 0.84616 0.8292 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72069 0.80458 NaN 1 0 Median 1.1125 0.9558 19.757 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8601300 4388300 4213000 928470 416760 511710 0 0 0 1554400 932030 622420 6118400 3039500 3078900 0 0 0 0 0 0 21781 3341 22729 115074;115075;115076;115077;115078 116032;116033;116034 116033 3 LNEQQSVLQR AEEEIKQEMNTLQQKLNEQQSVLQRIAAPN TLQQKLNEQQSVLQRIAAPNMKAMEKLESV K L N Q R I 0 1 1 0 0 3 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1213.6415 Q14683;G8JLG1;V9GY57 Q14683 1010 1019 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 9.0093E-31 210.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 4 1.2962 1.1189 14.21 10 Median 1.3253 1.3006 NaN 1 0 Median 1.3365 1.1224 NaN 1 0 Median 0.9038 0.99349 NaN 1 0 Median 1.2677 1.1153 NaN 1 0 Median 1.1639 1.204 24.446 2 0 Median 1.2769 1.0661 15.922 4 1 Median 118160000 57049000 61110000 3175700 1449300 1726500 6914800 2757200 4157500 23112000 12255000 10857000 4138400 1756600 2381800 45750000 22903000 22846000 35067000 15927000 19140000 21782 2889 22730 115079;115080;115081;115082;115083;115084;115085;115086;115087;115088;115089 116035;116036;116037;116038;116039;116040;116041;116042;116043;116044;116045;116046;116047;116048;116049 116037 15 LNEQYEHASIHLWDLLEGK EFYKLVDPERDMSLRLNEQYEHASIHLWDL YEHASIHLWDLLEGKEKPVCGTTYKVLKEI R L N G K E 1 0 1 1 0 1 3 1 2 1 4 1 0 0 0 1 0 1 1 0 0 0 19 0 2294.1331 Q14444;G3V153 Q14444 203 221 CAPRIN1 Caprin-1 yes no 3 5.1332E-11 97.32 By matching By MS/MS 1 3 1.0041 0.90709 23.033 4 Median 1.0256 1.0105 NaN 1 0 Median 0.98306 0.86013 23.969 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30190000 15099000 15090000 2027700 1108100 919560 28162000 13991000 14171000 0 0 0 0 0 0 0 0 0 0 0 0 21783 2878 22731 115090;115091;115092;115093 116050;116051;116052;116053 116050 4 LNESTFDTQITK IVVDAIDVLKSRFTKLNESTFDTQITKKMG FTKLNESTFDTQITKKMGYYKILDVMYSRL K L N T K K 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 1 3 0 0 0 0 0 12 0 1395.6882 P78527 P78527 1858 1869 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.0731E-06 166.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 1 0.98631 1.0234 17.967 10 Median 0.96207 0.94658 1.1755 2 0 Median 1.5035 1.333 NaN 1 1 Median 0.94849 1.0234 7.4352 2 0 Median 1.427 1.3691 7.2847 2 0 Median 0.8858 0.92801 0.19925 2 2 Median 1.5423 1.3212 NaN 1 0 Median 462550000 228740000 233810000 117370000 58347000 59027000 5987500 2145600 3841900 238250000 121740000 116510000 50794000 21138000 29656000 45055000 23187000 21869000 5090000 2178400 2911600 21784 2647 22732 115094;115095;115096;115097;115098;115099;115100;115101;115102;115103 116054;116055;116056;116057;116058;116059;116060;116061;116062;116063;116064;116065;116066;116067;116068;116069;116070 116066 17 LNESTFDTQITKK IVVDAIDVLKSRFTKLNESTFDTQITKKMG TKLNESTFDTQITKKMGYYKILDVMYSRLP K L N K K M 0 0 1 1 0 1 1 0 0 1 1 2 0 1 0 1 3 0 0 0 0 0 13 1 1523.7831 P78527 P78527 1858 1870 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.7204E-05 150.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 2 2 0.92289 1.0434 33.96 9 Median 0.96245 1.0481 15.364 2 1 Median 1.5412 1.4735 NaN 1 1 Median 0.80651 0.91117 10.9 3 1 Median 1.4139 1.4364 5.552 2 1 Median 0.47467 0.51155 NaN 1 1 Median NaN NaN NaN 0 0 Median 192010000 102440000 89577000 35116000 19151000 15965000 18914000 7577700 11336000 121860000 67126000 54730000 6945600 2727700 4217900 9182500 5854900 3327600 0 0 0 21785 2647 22733 115104;115105;115106;115107;115108;115109;115110;115111;115112;115113;115114;115115;115116 116071;116072;116073;116074;116075;116076;116077;116078;116079;116080;116081;116082;116083;116084;116085;116086;116087 116072 17 LNESVMVFTK IENIEKTRMRLEASKLNESVMVFTKDQTEK LEASKLNESVMVFTKDQTEKEIDEIHSKYR K L N T K D 0 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 1 0 0 2 0 0 10 0 1166.6005 Q9NS91 Q9NS91 319 328 RAD18 E3 ubiquitin-protein ligase RAD18 yes yes 2 0.067317 25.893 By matching By MS/MS 1 1 0.84606 0.89592 66.133 2 Median 0.53097 0.56128 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3481 1.4301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7454800 3506700 3948100 2831900 1780600 1051300 0 0 0 4622900 1726100 2896800 0 0 0 0 0 0 0 0 0 21786 4099 22734 115117;115118 116088 116088 1 LNEVLYPPLRPSQAR EQLMDFINQKQRDPRLNEVLYPPLRPSQAR LNEVLYPPLRPSQARLLIEKYEPNQQFLER R L N A R L 1 2 1 0 0 1 1 0 0 0 3 0 0 0 3 1 0 0 1 1 0 0 15 1 1751.9683 Q01970 Q01970 259 273 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3 6.6667E-05 73.91 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.59888 0.63857 26.392 4 Median 0.4046 0.44952 NaN 1 0 Median 0.56214 0.54195 NaN 1 0 Median 0.63802 0.77597 NaN 1 0 Median 0.76857 0.75242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14968000 8865300 6102500 2841300 2015700 825610 894500 480470 414040 8187200 4647800 3539500 3044700 1721400 1323400 0 0 0 0 0 0 21787 2695 22735 115119;115120;115121;115122 116089;116090;116091;116092 116090 4 LNEVYEAVK ISPKKSKYMTPMQQKLNEVYEAVKNYTDKR TPMQQKLNEVYEAVKNYTDKRGRRLSAIFL K L N V K N 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1063.555 Q86U86;E7EVG2;H0Y5B5 Q86U86 662 670 PBRM1 Protein polybromo-1 yes no 2 0.00072961 101.72 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.83938 0.81776 7.625 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67735 0.74548 NaN 1 0 Median 0.92268 0.83228 NaN 1 1 Median 0.7636 0.8035 NaN 1 1 Median 1.0451 0.89556 NaN 1 0 Median 35609000 19536000 16073000 0 0 0 0 0 0 26024000 14578000 11446000 4336100 2291700 2044400 3362300 1739400 1622900 1886800 927350 959420 21788 3273 22736 115123;115124;115125;115126 116093;116094;116095;116096 116093 4 LNFAVASR RVMMVAKKFLDAGHKLNFAVASRKTFSHEL FLDAGHKLNFAVASRKTFSHELSDFGLEST K L N S R K 2 1 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 876.48175 P30101 P30101 297 304 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0023369 138.83 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1.1123 1.0821 4.9487 6 Median 1.0922 1.0583 6.1061 3 0 Median 1.2525 1.0509 NaN 1 0 Median 1.1153 1.1191 NaN 1 0 Median 1.2919 1.1065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88121000 39631000 48489000 42270000 19611000 22659000 28013000 12299000 15714000 10572000 4750400 5821200 7266100 2970900 4295100 0 0 0 0 0 0 21789 2189 22737 115127;115128;115129;115130;115131;115132 116097;116098;116099;116100;116101;116102;116103;116104;116105 116101 9 LNFELTDALK QSQPATTDSTVTVQKLNFELTDALKTGITA VTVQKLNFELTDALKTGITAAKEKFDATMK K L N L K T 1 0 1 1 0 0 1 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 10 0 1162.6234 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 415 424 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.065949 41.029 By MS/MS 1 1.0516 1.0097 NaN 1 Median 1.0516 1.0097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4086800 1717000 2369800 4086800 1717000 2369800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21790 317 22738 115133 116106 116106 1 LNFGDDIPSALR IANLQRAYSLAKEQRLNFGDDIPSALRIAK EQRLNFGDDIPSALRIAKKKRWNSIEERRI R L N L R I 1 1 1 2 0 0 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1316.6725 Q9UNE7;H3BS86;H3BUD0 Q9UNE7 129 140 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 9.9476E-05 91.584 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.0092 0.89164 46.079 6 Median 1.0085 0.94293 NaN 1 0 Median 1.6682 1.4021 80.125 2 1 Median 0.78755 0.77789 NaN 1 0 Median 1.0099 0.84315 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7672 1.4784 NaN 1 0 Median 27011000 12758000 14254000 6855600 3241100 3614400 11899000 5178500 6720700 6241800 3403600 2838200 1704500 848430 856090 0 0 0 310300 86176 224130 21791 4342 22739 115134;115135;115136;115137;115138;115139 116107;116108;116109;116110;116111;116112;116113;116114;116115 116112 9 LNFIQVSK QPLAMKCIYCPIDTRLNFIQVSKLLKEVQP YCPIDTRLNFIQVSKLLKEVQPLHVVCPEQ R L N S K L 0 0 1 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 8 0 947.54402 Q9NV88;G3XAN1 Q9NV88 452 459 INTS9 Integrator complex subunit 9 yes no 2 0.0035928 86.794 By MS/MS By matching 1 1 1.1463 1.0982 6.5029 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0805 1.1498 NaN 1 0 Median 1.2161 1.0488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3390100 1606300 1783800 0 0 0 0 0 0 3183800 1515100 1668700 206320 91212 115100 0 0 0 0 0 0 21792 4126 22740 115140;115141 116116 116116 1 LNFIVTGLQDIDK VSDFQPSSQAGLNQKLNFIVTGLQDIDKCR QKLNFIVTGLQDIDKCRQQLHDITVPLEVF K L N D K C 0 0 1 2 0 1 0 1 0 2 2 1 0 1 0 0 1 0 0 1 0 0 13 0 1474.8031 Q9BTT4 Q9BTT4 41 53 MED10 Mediator of RNA polymerase II transcription subunit 10 yes yes 2 0.046987 25.386 By MS/MS 1 1.1784 1.1912 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1784 1.1912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 925700 430640 495060 0 0 0 0 0 0 925700 430640 495060 0 0 0 0 0 0 0 0 0 21793 3828 22741 115142 116117 116117 1 LNFSHGTHEYHAETIK ETLKEMIKSGMNVARLNFSHGTHEYHAETI NFSHGTHEYHAETIKNVRTATESFASDPIL R L N I K N 1 0 1 0 0 0 2 1 3 1 1 1 0 1 0 1 2 0 1 0 0 0 16 0 1882.8962 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 74 89 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3;4 7.0244E-74 252.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 22 19 4 4 1 2 1.1586 1.0629 15.619 51 Median 1.1938 1.1286 11.727 22 0 Median 1.1593 0.97267 19.715 18 4 Median 1.0794 1.169 3.5662 4 0 Median 1.1881 1.0116 12.278 4 0 Median 0.95133 1.0085 NaN 1 0 Median 1.336 1.0858 22.624 2 0 Median 3338500000 1499100000 1839400000 1210100000 529320000 680750000 2071000000 943950000 1127100000 12669000 5904000 6764800 42114000 18759000 23356000 1970700 936680 1034000 616990 222400 394590 21794 2005;1237 22742 115143;115144;115145;115146;115147;115148;115149;115150;115151;115152;115153;115154;115155;115156;115157;115158;115159;115160;115161;115162;115163;115164;115165;115166;115167;115168;115169;115170;115171;115172;115173;115174;115175;115176;115177;115178;115179;115180;115181;115182;115183;115184;115185;115186;115187;115188;115189;115190;115191;115192;115193;115194 116118;116119;116120;116121;116122;116123;116124;116125;116126;116127;116128;116129;116130;116131;116132;116133;116134;116135;116136;116137;116138;116139;116140;116141;116142;116143;116144;116145;116146;116147;116148;116149;116150;116151;116152;116153;116154;116155;116156;116157;116158;116159;116160;116161;116162;116163;116164;116165;116166;116167;116168;116169;116170;116171;116172;116173;116174;116175;116176;116177;116178;116179 116156 62 LNFSHGTHEYHAETIKNVR ETLKEMIKSGMNVARLNFSHGTHEYHAETI HGTHEYHAETIKNVRTATESFASDPILYRP R L N V R T 1 1 2 0 0 0 2 1 3 1 1 1 0 1 0 1 2 0 1 1 0 0 19 1 2252.1087 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 74 92 PKM Pyruvate kinase;Pyruvate kinase PKM no no 5 0.0087904 32.181 By MS/MS 1 1.1732 1.1804 NaN 1 Median 1.1732 1.1804 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4203200 2105500 2097700 4203200 2105500 2097700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21795 2005;1237 22743 115195 116180 116180 1 LNGFQLENFTLK VTYSSKDQARQALDKLNGFQLENFTLKVAY LDKLNGFQLENFTLKVAYIPDEMAAQQNPL K L N L K V 0 0 2 0 0 1 1 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 0 1422.7507 O00425 O00425 139 150 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.0044584 43.512 By matching By MS/MS By matching 1 1 1 1.2729 1.1143 14.161 3 Median 0.90095 0.87295 NaN 1 0 Median 1.2844 1.1169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2729 1.1143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2230700 1086100 1144600 1055400 540600 514750 1056900 495520 561350 0 0 0 118460 49959 68497 0 0 0 0 0 0 21796 1462 22744 115196;115197;115198 116181 116181 1 LNGHQLENHALK VTYSNREQTRQAIMKLNGHQLENHALKVSY IMKLNGHQLENHALKVSYIPDEQIAQGPEN K L N L K V 1 0 2 0 0 1 1 1 2 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1372.7211 Q9NZI8 Q9NZI8 139 150 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 0.00034037 55.188 By matching By MS/MS By matching By matching 1 1 1 1 1.2447 1.1203 21.986 4 Median 1.2185 1.1718 NaN 1 0 Median 1.2715 1.0711 NaN 1 0 Median 1.514 1.6172 NaN 1 0 Median 1.1352 0.97516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12749000 5520700 7228100 3299200 1530000 1769200 7178000 3050200 4127800 1279300 447330 831940 992320 493160 499160 0 0 0 0 0 0 21797 4188 22745 115199;115200;115201;115202 116182;116183 116182 2 LNGILADEMGLGK QHIGLDWLVTMYEKKLNGILADEMGLGKTI KKLNGILADEMGLGKTIQTISLLAHLACEK K L N G K T 1 0 1 1 0 0 1 3 0 1 3 1 1 0 0 0 0 0 0 0 0 0 13 0 1329.6962 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 637 649 SRCAP Helicase SRCAP yes no 2 0.026507 27.481 By MS/MS 1 3.1084 3.4101 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1084 3.4101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1796700 433050 1363700 0 0 0 0 0 0 1796700 433050 1363700 0 0 0 0 0 0 0 0 0 21798 3199 22746 115203 116184 116184 1 LNGQVLVFTLPLTDQVSVIK IKVQVPNMQDKTEWKLNGQVLVFTLPLTDQ LVFTLPLTDQVSVIKVKIHEATGMPAGKQK K L N I K V 0 0 1 1 0 2 0 1 0 1 4 1 0 1 1 1 2 0 0 4 0 0 20 0 2183.2566 Q15459 Q15459 722 741 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.057715 8.089 By MS/MS 1 1.0613 1.0886 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0613 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median 1070500 483500 587050 0 0 0 0 0 0 0 0 0 0 0 0 1070500 483500 587050 0 0 0 21799 2954 22747 115204 116185 116185 1 LNGTDPEDVIR GPINFTMFLTMFGEKLNGTDPEDVIRNAFA FGEKLNGTDPEDVIRNAFACFDEEATGTIQ K L N I R N 0 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1227.6095 J3QRS3;P19105;O14950;J3KTJ1;P24844 J3QRS3 99 109 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 0.00015771 101.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.73088 0.68429 16.517 4 Median 0.88184 0.83282 NaN 1 0 Median 0.85695 0.71 NaN 1 0 Median 0.58226 0.55949 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62336 0.6595 NaN 1 0 Median NaN NaN NaN 0 0 Median 89077000 45987000 43090000 58289000 28883000 29406000 18139000 9381700 8757500 9625500 6150000 3475500 0 0 0 3023400 1572500 1450900 0 0 0 21800 1352;2127 22748 115205;115206;115207;115208 116186;116187;116188;116189;116190;116191;116192;116193;116194;116195;116196;116197 116196 12 LNHFFEGVEAR LQSYVIYSLGQPLEKLNHFFEGVEARVAQG PLEKLNHFFEGVEARVAQGIREEEVSYQLA K L N A R V 1 1 1 0 0 0 2 1 1 0 1 0 0 2 0 0 0 0 0 1 0 0 11 0 1317.6466 Q9NV70 Q9NV70 778 788 EXOC1 Exocyst complex component 1 yes yes 3 0.0001082 70.488 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0295 0.93052 51.924 4 Median 0.90162 0.88185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75195 0.80259 NaN 1 0 Median 2.262 2.4695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1755 0.98188 NaN 1 0 Median 11063000 5213300 5849600 2722500 1708300 1014300 0 0 0 5094300 2767700 2326600 2966400 631040 2335300 0 0 0 279760 106330 173430 21801 4125 22749 115209;115210;115211;115212 116198;116199;116200 116199 2 LNHLVDSLQQLR TLANNREIINQQRKRLNHLVDSLQQLRLYK RKRLNHLVDSLQQLRLYKQTSLWSLSSAVP R L N L R L 0 1 1 1 0 2 0 0 1 0 4 0 0 0 0 1 0 0 0 1 0 0 12 0 1434.7943 A0A494C1F2;P35658;A0A0A0MSW3 A0A494C1F2 863 874 NUP214 Nuclear pore complex protein Nup214 yes no 2;3 9.0542E-07 110.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 1 1 1.0795 0.95447 23.983 11 Median 1.0439 1.032 34.654 4 0 Median 1.0991 0.92674 4.1689 2 0 Median 0.91575 0.99814 23.373 3 0 Median 1.3994 1.2348 NaN 1 0 Median 0.85111 0.89429 NaN 1 0 Median NaN NaN NaN 0 0 Median 73744000 37339000 36405000 15983000 8186200 7797100 5242800 2385400 2857400 48023000 24489000 23534000 803510 331750 471760 3691900 1947400 1744500 0 0 0 21802 467 22750 115213;115214;115215;115216;115217;115218;115219;115220;115221;115222;115223 116201;116202;116203;116204;116205;116206;116207;116208;116209;116210;116211;116212 116205 12 LNHNAAFMQIPMGLEGNFK MGSNPARALQQMRSKLNHNAAFMQIPMGLE AAFMQIPMGLEGNFKGIVDLIEERAIYFDG K L N F K G 2 0 3 0 0 1 1 2 1 1 2 1 2 2 1 0 0 0 0 0 0 0 19 0 2131.0343 Q96RP9;F8WAU4;C9IZ01 Q96RP9 194 212 GFM1 Elongation factor G, mitochondrial yes no 3 0.015053 18.784 By MS/MS By matching 2 1 1.0008 0.98684 3.2106 3 Median 0.98353 0.97471 4.4267 2 0 Median 1.0944 0.98684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616500 2431200 2185300 3993000 2138400 1854600 623540 292820 330720 0 0 0 0 0 0 0 0 0 0 0 0 21803 3728 22751 115224;115225;115226 116213 116213 1 LNHQAELLLKK QFKSEAYQQQIEMERLNHQAELLLKKVTEE EMERLNHQAELLLKKVTEESDKHTVQDPLM R L N K K V 1 0 1 0 0 1 1 0 1 0 4 2 0 0 0 0 0 0 0 0 0 0 11 1 1305.7769 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4241 4251 DST Dystonin yes no 3 0.040838 16.533 By matching By MS/MS 1 1 0.97103 1.0092 48.123 2 Median NaN NaN NaN 0 0 Median 1.4924 1.4183 NaN 1 0 Median 0.63182 0.71813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2493000 1138200 1354700 0 0 0 1706300 697120 1009200 786630 441110 345510 0 0 0 0 0 0 0 0 0 21804 934 22752 115227;115228 116214 116214 1 LNHQLEGLAFQMK LRRSLAPYAQDVQGKLNHQLEGLAFQMKKH GKLNHQLEGLAFQMKKHAEELKAKISAKAE K L N M K K 1 0 1 0 0 2 1 1 1 0 3 1 1 1 0 0 0 0 0 0 0 0 13 0 1527.7868 CON__Q32PJ2 CON__Q32PJ2 234 246 yes yes 3 0.055633 22.321 By MS/MS 1 0.30985 0.30633 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30985 0.30633 NaN 1 1 Median NaN NaN NaN 0 0 Median 1810600 1391400 419270 0 0 0 0 0 0 0 0 0 0 0 0 1810600 1391400 419270 0 0 0 + 21805 775 22753 115229 116215 116215 1 LNHVAAGLVSPSLK AADQLLKLMSTVDPKLNHVAAGLVSPSLKS KLNHVAAGLVSPSLKSDTSSKEIEEAMKRV K L N L K S 2 0 1 0 0 0 0 1 1 0 3 1 0 0 1 2 0 0 0 2 0 0 14 0 1404.8089 Q5T760;Q05519;Q5T757 Q5T760 198 211 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2;3 1.1879E-05 151.79 By MS/MS By MS/MS 3 2 0.98827 0.9541 6.4967 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96544 0.9541 3.9903 3 1 Median 1.1247 0.95868 11.53 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75770000 39356000 36414000 0 0 0 0 0 0 70357000 36569000 33788000 5413100 2787000 2626100 0 0 0 0 0 0 21806 2717 22754 115230;115231;115232;115233;115234 116216;116217;116218;116219;116220;116221;116222 116219 7 LNHVGDWGTQFGMLIAHLQDK SISRLFEFAGYDVLRLNHVGDWGTQFGMLI WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQ R L N D K F 1 0 1 2 0 2 0 3 2 1 3 1 1 1 0 0 1 1 0 1 0 0 21 0 2379.1794 P54136 P54136 235 255 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.02702 13.455 By MS/MS 1 1.1603 1.0128 NaN 1 Median NaN NaN NaN 0 0 Median 1.1603 1.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 964670 483340 481330 0 0 0 964670 483340 481330 0 0 0 0 0 0 0 0 0 0 0 0 21807 2480 22755 115235 116223 116223 1 LNHYVLYK FVLRALRMLPSTSRRLNHYVLYKAVQGFFT LPSTSRRLNHYVLYKAVQGFFTSNNATRDF R L N Y K A 0 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 2 1 0 0 8 0 1048.5706 O43242 O43242 108 115 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.053878 50.632 By MS/MS 1 1.2548 1.0632 NaN 1 Median NaN NaN NaN 0 0 Median 1.2548 1.0632 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5416700 2527000 2889600 0 0 0 5416700 2527000 2889600 0 0 0 0 0 0 0 0 0 0 0 0 21808 1560 22756 115236 116224 116224 1 LNIDSIIQR ______________________________ MADLDKLNIDSIIQRLLEVRGSKPGKNVQL K L N Q R L 0 1 1 1 0 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1070.6084 F8VYE8;P36873;F8VR82;A0A087WYY5 F8VYE8 7 15 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 0.0082663 67.169 By MS/MS 1 0.94273 0.92579 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94273 0.92579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2605900 1272000 1333900 0 0 0 0 0 0 2605900 1272000 1333900 0 0 0 0 0 0 0 0 0 21809 1074 22757 115237 116225 116225 1 LNIGDLQVTK DEAVILCKTAIGALKLNIGDLQVTKETIED IGALKLNIGDLQVTKETIEDVEEMLNNLPG K L N T K E 0 0 1 1 0 1 0 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1099.6237 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 123 132 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.0003619 104.48 By MS/MS By MS/MS 1 1 1.2652 1.2336 18.5 2 Median 1.1768 1.0823 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3604 1.406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50939000 22840000 28099000 39291000 17821000 21470000 0 0 0 11648000 5018600 6629700 0 0 0 0 0 0 0 0 0 21810 4345 22758 115238;115239 116226;116227;116228;116229 116229 4 LNIGGGGLGYR AWFRKSRFKGGKGKKLNIGGGGLGYRERPG KGKKLNIGGGGLGYRERPGLGSENMDRGNN K L N Y R E 0 1 1 0 0 0 0 5 0 1 2 0 0 0 0 0 0 0 1 0 0 0 11 0 1075.5774 Q86XP3;A0A0A0MSJ0 Q86XP3 651 661 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.00014078 117.4 By matching By MS/MS By MS/MS 1 2 1 0.43376 0.47696 77.69 4 Median NaN NaN NaN 0 0 Median 0.22141 0.20953 NaN 1 0 Median 0.43376 0.47696 69.687 2 0 Median 1.2565 1.0672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30379000 18559000 11821000 0 0 0 514840 381520 133320 25061000 16308000 8753400 4803100 1869100 2934000 0 0 0 0 0 0 21811 3302 22759 115240;115241;115242;115243 116230;116231 116230 2 LNIIIVAEGAIDTQNKPITSEK QMCVKLSENRARKKRLNIIIVAEGAIDTQN EGAIDTQNKPITSEKIKELVVTQLGYDTRV R L N E K I 2 0 2 1 0 1 2 1 0 5 1 2 0 0 1 1 2 0 0 1 0 0 22 1 2366.3057 Q01813;B1APP6;V9GY25 Q01813 266 287 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 3 6.4505E-07 43.497 By MS/MS 1 0.92363 0.89414 NaN 1 Median NaN NaN NaN 0 0 Median 0.92363 0.89414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6073500 3034800 3038800 0 0 0 6073500 3034800 3038800 0 0 0 0 0 0 0 0 0 0 0 0 21812 2692 22760 115244 116232;116233;116234 116233 3 LNIISNLDCVNEVIGIR PLFLAQLKDECPEVRLNIISNLDCVNEVIG IISNLDCVNEVIGIRQLSQSLLPAIVELAE R L N I R Q 0 1 3 1 1 0 1 1 0 4 2 0 0 0 0 1 0 0 0 2 0 0 17 0 1941.0353 P30153;B3KQV6;P30154;H0YDG7 P30153 382 398 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 2.281E-13 117.79 By MS/MS By MS/MS 1 4 1.0901 0.98067 20.78 5 Median 0.99767 0.99576 NaN 1 0 Median 1.1116 0.95687 22.958 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20305000 9652100 10653000 2729200 1313100 1416100 17576000 8339100 9236900 0 0 0 0 0 0 0 0 0 0 0 0 21813 2190;2191 22761 115245;115246;115247;115248;115249 116235;116236;116237;116238;116239;116240 116238 6 LNILDTLSK AVPLALALISVSNPRLNILDTLSKFSHDAD SVSNPRLNILDTLSKFSHDADPEVSYNSIF R L N S K F 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1015.5914 Q13200;H7C1H2 Q13200 704 712 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.00079248 97.635 By MS/MS By matching By MS/MS By matching 4 2 1 1 1.2311 1.2146 16.802 8 Median 1.1262 1.0933 13.319 4 0 Median 1.2602 1.1012 27.308 2 0 Median 1.3166 1.3977 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3079 1.3442 NaN 1 0 Median NaN NaN NaN 0 0 Median 28633000 12887000 15746000 22609000 10517000 12092000 2614900 944310 1670600 1959500 810820 1148700 0 0 0 1449500 615050 834410 0 0 0 21814 2796 22762 115250;115251;115252;115253;115254;115255;115256;115257 116241;116242;116243;116244;116245;116246;116247 116243 7 LNINPEDGMADYSDPSYVK PVINSTPGRTPLRDKLNINPEDGMADYSDP PEDGMADYSDPSYVKQMERESREHLRLGLL K L N V K Q 1 0 2 3 0 0 1 1 0 1 1 1 1 0 2 2 0 0 2 1 0 0 19 0 2126.9467 Q99459 Q99459 448 466 CDC5L Cell division cycle 5-like protein yes yes 2 6.0411E-07 61.212 By MS/MS 1 0.66244 0.72773 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66244 0.72773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6595500 3705400 2890200 0 0 0 0 0 0 6595500 3705400 2890200 0 0 0 0 0 0 0 0 0 21815 3745 22763 115258 116248;116249 116249 2 LNIPATNVFANR ISGGFRSIVEHVASKLNIPATNVFANRLKF ASKLNIPATNVFANRLKFYFNGEYAGFDET K L N N R L 2 1 3 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 12 0 1328.7201 C9JBI3;P78330 C9JBI3 123 134 PSPH Phosphoserine phosphatase yes no 2 4.0931E-06 105.4 By MS/MS By matching By MS/MS 1 1 1 0.98342 0.83232 18.305 3 Median 0.87558 0.83232 NaN 1 0 Median 0.98342 0.83226 NaN 1 0 Median 1.1962 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42262000 22858000 19404000 34994000 19452000 15542000 3378400 1631700 1746700 3890300 1774600 2115700 0 0 0 0 0 0 0 0 0 21816 688 22764 115259;115260;115261 116250;116251;116252;116253 116251 4 LNIPVSQVNPR IISEGNETVEDIAARLNIPVSQVNPRDAKA IAARLNIPVSQVNPRDAKACVVHGSDLKDM R L N P R D 0 1 2 0 0 1 0 0 0 1 1 0 0 0 2 1 0 0 0 2 0 0 11 0 1235.6986 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637 P05023 648 658 ATP1A1;ATP1A3 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3 yes no 2 0.00012337 120.15 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 1 0.80963 0.7436 11.535 11 Median 0.79472 0.76039 1.4327 4 0 Median 0.85587 0.72006 3.4208 4 0 Median 0.70927 0.74935 5.0527 2 2 Median 1.2318 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 433890000 232850000 201040000 218470000 118870000 99605000 195540000 102530000 93007000 18618000 10864000 7753700 1258000 585470 672540 0 0 0 0 0 0 21817 1857 22765 115262;115263;115264;115265;115266;115267;115268;115269;115270;115271;115272 116254;116255;116256;116257;116258;116259;116260;116261;116262;116263;116264;116265;116266;116267;116268;116269;116270;116271 116254 18 LNIPWNHIR AMAGRLMIRKLVAEKLNIPWNHIRLQRTAK KLVAEKLNIPWNHIRLQRTAKGKPVLAKDS K L N I R L 0 1 2 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 0 9 0 1161.6407 Q9NRN7;E9PLW6;E9PNF3 Q9NRN7 75 83 AASDHPPT L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase yes no 2 0.0070674 52.636 By MS/MS By matching 2 1 1.1857 1.0494 11.53 3 Median 1.0476 0.9953 15.722 2 0 Median 1.1857 1.0494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25359000 11375000 13984000 23390000 10593000 12797000 1969600 782300 1187300 0 0 0 0 0 0 0 0 0 0 0 0 21818 4085 22766 115273;115274;115275 116272;116273 116273 2 LNIQPSEADYAVDIR HRLGIEGLSLHNVLKLNIQPSEADYAVDIR LNIQPSEADYAVDIRSPAISWVNNLEVDSR K L N I R S 2 1 1 2 0 1 1 0 0 2 1 0 0 0 1 1 0 0 1 1 0 0 15 0 1702.8526 Q9NYU2 Q9NYU2 440 454 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 3.6888E-08 152.85 By MS/MS By matching 1 1 1.0487 0.93723 24.767 2 Median 0.83848 0.78666 NaN 1 0 Median 1.3115 1.1166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44434000 22900000 21534000 40773000 21304000 19469000 3661200 1596000 2065200 0 0 0 0 0 0 0 0 0 0 0 0 21819 4179 22767 115276;115277 116274;116275 116275 2 LNIRPLLR TLDELGIHLTKEELKLNIRPLLRLVCKKFF LTKEELKLNIRPLLRLVCKKFFGEFTGFVD K L N L R L 0 2 1 0 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 1 993.64473 Q15029 Q15029 410 417 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0032445 98.133 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 3 1 1.0007 1.0339 17.899 9 Median 1.001 1.1122 NaN 1 0 Median 1.1235 1.0832 NaN 1 0 Median 0.82736 0.95599 NaN 1 0 Median 1.0894 1.0147 19.068 2 0 Median 1.0258 1.1145 24.838 3 1 Plateau 0.84573 0.76453 NaN 1 0 Median 41600000 18771000 22830000 5018800 2339400 2679300 4081700 1939700 2142000 9241100 4772400 4468700 4587200 1988600 2598600 17762000 7270500 10492000 909580 460010 449580 21820 2917 22768 115278;115279;115280;115281;115282;115283;115284;115285;115286 116276;116277;116278 116278 3 LNISFPATGCQK ______________________________ ______________________________ K L N Q K L 1 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1334.6653 P62753;A2A3R7 P62753 3 14 RPS6 40S ribosomal protein S6 yes no 2 4.0931E-06 105.4 By MS/MS By MS/MS By matching 1 1 1 1.0038 0.90739 5.3926 3 Median 1.0114 0.93688 NaN 1 0 Median 1.0038 0.84333 NaN 1 0 Median 0.89276 0.90739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22844000 11474000 11370000 10314000 5273900 5040100 12383000 6131900 6251500 146510 68403 78109 0 0 0 0 0 0 0 0 0 21821 2596 22769 115287;115288;115289 116279;116280;116281 116280 3 LNITSLQFK RLDSDAAGVFCIRGKLNITSLQFKRSEVSE FCIRGKLNITSLQFKRSEVSEEVTENGTEE K L N F K R 0 0 1 0 0 1 0 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 9 0 1062.6073 Q3B726 Q3B726 198 206 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 0.0011047 85.212 By MS/MS By matching 1 2 1.3657 1.1591 10.24 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0392 1.074 NaN 1 0 Median 1.4209 1.2347 8.9444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12199000 6025100 6174300 0 0 0 0 0 0 11795000 5824500 5970300 404620 200640 203970 0 0 0 0 0 0 21822 3009 22770 115290;115291;115292 116282;116283 116283 2 LNITVVQAK AQQLQYGGAVGTVGRLNITVVQAKLAKNYG VGTVGRLNITVVQAKLAKNYGMTRMDPYCR R L N A K L 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 984.59678 Q9H0E2;E7EN89 Q9H0E2 55 63 TOLLIP Toll-interacting protein yes no 2 0.0016867 78.77 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1986 1.0099 9.3479 5 Median 0.95768 0.88142 NaN 1 0 Median 1.2611 1.0602 3.1521 2 2 Median 0.92686 0.88896 NaN 1 0 Median 1.1986 1.0099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33699000 15754000 17945000 12739000 5900700 6838500 15560000 7436600 8123600 2295300 1056200 1239200 3104600 1360800 1743800 0 0 0 0 0 0 21823 3925 22771 115293;115294;115295;115296;115297 116284;116285;116286;116287;116288;116289 116284 6 LNIWDVGGQK TLGFNIKTLEHRGFKLNIWDVGGQKSLRSY HRGFKLNIWDVGGQKSLRSYWRNYFESTDG K L N Q K S 0 0 1 1 0 1 0 2 0 1 1 1 0 0 0 0 0 1 0 1 0 0 10 0 1128.5928 P36404;V9GYD0 P36404 62 71 ARL2;ARL2-SNX15 ADP-ribosylation factor-like protein 2 yes no 2 0.022064 36.557 By MS/MS By matching 1 1 1.4225 1.4373 15.032 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6765 1.5985 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.207 1.2924 NaN 1 0 Median NaN NaN NaN 0 0 Median 2557700 1073900 1483800 0 0 0 0 0 0 1268200 615980 652200 0 0 0 1289500 457890 831620 0 0 0 21824 2254 22772 115298;115299 116290 116290 1 LNIWGEAR LSKRPMPLSARGNSRLNIWGEARVGSELCA SARGNSRLNIWGEARVGSELCAGWEEQFEV R L N A R V 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 8 0 957.50321 Q12789;H3BU55 Q12789 1175 1182 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.0035442 89.752 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.1963 1.213 14.168 5 Median NaN NaN NaN 0 0 Median 1.4285 1.213 NaN 1 0 Median 0.90253 0.98414 NaN 1 0 Median 1.5351 1.3407 NaN 1 0 Median 1.1785 1.2302 NaN 1 0 Median 1.1963 0.98039 NaN 1 0 Median 14423000 8202400 6220800 0 0 0 897770 356220 541550 11976000 7111500 4864200 227840 81082 146750 1155300 585240 570090 166630 68391 98239 21825 2758 22773 115300;115301;115302;115303;115304 116291;116292 116291 2 LNKDQWEER AGDKLLPQRVLEQHKLNKDQWEERIQVWHE VLEQHKLNKDQWEERIQVWHEEHRGMLRED K L N E R I 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 9 1 1216.5836 P26038 P26038 163 171 MSN Moesin yes yes 2;3 0.00057953 77.379 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.0575 0.9753 11.726 8 Median 1.0754 1.1029 17.578 3 0 Median 1.0292 0.96982 4.6036 3 0 Plateau 1.0593 1.1251 NaN 1 0 Median 1.0556 0.96792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34352000 16644000 17709000 10046000 4955000 5090900 14403000 7244300 7158400 9227700 4135300 5092500 675970 309090 366880 0 0 0 0 0 0 21826 2139 22774 115305;115306;115307;115308;115309;115310;115311;115312 116293;116294;116295;116296;116297;116298;116299;116300;116301;116302 116299 10 LNKELASSEQNKNHINNELK SKSKEINQTRDRLAKLNKELASSEQNKNHI ASSEQNKNHINNELKRKEEQLSSYEDKLFD K L N L K R 1 0 5 0 0 1 3 0 1 1 3 3 0 0 0 2 0 0 0 0 0 0 20 2 2322.1928 Q92878;A0A1W2PQ90;A0A494C1B7;E7EN38 Q92878 597 616 RAD50 DNA repair protein RAD50 yes no 5 0.028411 14.31 By MS/MS 1 1.0999 1.3217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0999 1.3217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2610000 1332000 1278000 0 0 0 0 0 0 2610000 1332000 1278000 0 0 0 0 0 0 0 0 0 21827 3561 22775 115313 116303 116303 1 LNKPQPQPSPLLSTHHTQEEDISSK REPVFPSSTKKKCPKLNKPQPQPSPLLSTH LLSTHHTQEEDISSKMASVVIDDLPKEGEK K L N S K M 0 0 1 1 0 3 2 0 2 1 3 2 0 0 4 4 2 0 0 0 0 0 25 1 2810.4199 B5MDQ0;Q2NKX8 B5MDQ0 624 648 ERCC6L DNA excision repair protein ERCC-6-like yes no 4;5 2.7025E-08 42.746 By MS/MS By MS/MS 2 2 0.78255 0.84057 9.7136 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78184 0.89722 1.7003 2 0 Median 0.80437 0.76622 5.5742 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15266000 7729200 7537200 0 0 0 0 0 0 9939600 4803200 5136400 5326800 2926000 2400800 0 0 0 0 0 0 21828 624 22776 115314;115315;115316;115317 116304;116305;116306;116307;116308;116309 116308 6 LNKPYIYGPTSQGER VFADNVFALKEYAIRLNKPYIYGPTSQGER LNKPYIYGPTSQGERMQILQNFKHNPKINT R L N E R M 0 1 1 0 0 1 1 2 0 1 1 1 0 0 2 1 1 0 2 0 0 0 15 1 1721.8737 A0A2R8Y6W8;P19447 A0A2R8Y6W8 600 614 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 3 5.7169E-05 75.764 By MS/MS By MS/MS 1 1 0.77972 0.80578 6.8875 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67683 0.76748 NaN 1 0 Median 0.89826 0.846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12732000 7477500 5254100 0 0 0 0 0 0 9228800 5837800 3391000 3502700 1639700 1863000 0 0 0 0 0 0 21829 378 22777 115318;115319 116310;116311;116312;116313;116314 116311 5 LNLAFVANLFNK RQFVTPADVVSGNPKLNLAFVANLFNKYPA NPKLNLAFVANLFNKYPALTKPENQDIDWT K L N N K Y 2 0 3 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 1 0 0 12 0 1362.766 P13797;A0A0A0MSQ0;H7C4N2 P13797 365 376 PLS3 Plastin-3 yes no 2 0.00011243 90.657 By MS/MS By MS/MS By matching 1 3 1 1.224 1.0711 3.7142 5 Median 1.1511 1.0759 NaN 1 0 Median 1.2304 1.0538 3.4007 3 0 Median 1.0618 1.1104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 667060000 296400000 370670000 19092000 8710200 10382000 647520000 287450000 360070000 453890 240740 213150 0 0 0 0 0 0 0 0 0 21830 1995 22778 115320;115321;115322;115323;115324 116315;116316;116317;116318;116319;116320 116317 6 LNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL K L N G R L 0 1 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 999.57129 P62136;E9PMD7 P62136 7 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 0.00047366 122.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.1797 1.0733 23.481 8 Median NaN NaN NaN 0 0 Median 0.94837 0.79821 46.19 2 0 Median 1.0491 0.99907 17.289 2 0 Median 1.2562 1.0719 3.6436 2 0 Median 1.1032 1.1863 NaN 1 0 Median 1.197 1.0475 NaN 1 0 Median 56467000 24926000 31541000 0 0 0 17747000 7134900 10612000 32633000 14968000 17665000 3696200 1655000 2041200 1889200 927510 961710 501580 240540 261040 21831 2569 22779 115325;115326;115327;115328;115329;115330;115331;115332 116321;116322;116323;116324;116325;116326;116327;116328 116322 8 LNLEHIATSSAVSK YVDKVLETTVEIFNKLNLEHIATSSAVSKE KLNLEHIATSSAVSKELTRLLKIPVDTYNN K L N S K E 2 0 1 0 0 0 1 0 1 1 2 1 0 0 0 3 1 0 0 1 0 0 14 0 1468.7886 Q96QK1 Q96QK1 383 396 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2;3 1.0008E-05 125.53 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.3057 1.1416 15.029 8 Median 1.1409 1.0199 27.818 3 0 Median 1.3116 1.1472 2.5359 3 0 Median 1.0997 1.1213 NaN 1 0 Median 1.3303 1.1537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60901000 27515000 33385000 33552000 15713000 17839000 15081000 6575000 8505700 9812000 4287700 5524300 2456200 939530 1516700 0 0 0 0 0 0 21832 3722 22780 115333;115334;115335;115336;115337;115338;115339;115340 116329;116330;116331;116332;116333;116334;116335 116331 7 LNLENKDYKK IHKNADGKIISLDAKLNLENKDYKKTTKVT SLDAKLNLENKDYKKTTKVTWLAETTHALP K L N K K T 0 0 2 1 0 0 1 0 0 0 2 3 0 0 0 0 0 0 1 0 0 0 10 2 1263.6823 P07814;V9GYZ6 P07814 594 603 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 0.004087 41.283 By MS/MS By matching 2 1 1.0947 1.1985 27.829 3 Plateau 0.8832 0.94617 33.436 2 0 Median 1.0609 1.2201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2555400 1179100 1376400 2229500 1044300 1185100 325960 134730 191230 0 0 0 0 0 0 0 0 0 0 0 0 21833 1892 22781 115341;115342;115343 116336;116337 116337 2 LNLGTDSDSSPQK PGSEARTTGDISVEKLNLGTDSDSSPQKSS EKLNLGTDSDSSPQKSSRDPPSSPSSLSSP K L N Q K S 0 0 1 2 0 1 0 1 0 0 2 1 0 0 1 3 1 0 0 0 0 0 13 0 1360.647 K7EN76;Q16512 K7EN76 39 51 PKN1 Serine/threonine-protein kinase N1 yes no 2 0.00059926 69.672 By MS/MS By MS/MS By matching 1 1 1 1.1018 0.91689 46.829 3 Median 0.5168 0.52087 NaN 1 0 Median 1.4995 1.3192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1018 0.91689 NaN 1 0 Median 5567500 2619800 2947800 1374900 860840 514090 1957300 612950 1344400 0 0 0 0 0 0 0 0 0 2235300 1146000 1089300 21834 1384 22782 115344;115345;115346 116338;116339;116340 116340 3 LNLGTVGFYR MNVVLKNVKPDQWVKLNLGTVGFYRTQYSS DQWVKLNLGTVGFYRTQYSSAMLESLLPGI K L N Y R T 0 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 1 0 1 1 0 0 10 0 1138.6135 E9PLK3;P55786;H0YCQ5 E9PLK3 577 586 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.00037242 111.17 By MS/MS By MS/MS By matching 2 1 1 1.0112 1.0265 13.175 4 Median 0.94781 0.91643 11.701 2 0 Median 1.3333 1.1522 NaN 1 0 Median 0.98788 1.0585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41908000 19598000 22310000 31461000 14965000 16496000 7876900 3336300 4540600 2569200 1296200 1273100 0 0 0 0 0 0 0 0 0 21835 960 22783 115347;115348;115349;115350 116341;116342;116343 116342 3 LNLHYAVVSK NALDVYCPVQWEYGRLNLHYAVVSKRKILQ WEYGRLNLHYAVVSKRKILQLVATGAVRDW R L N S K R 1 0 1 0 0 0 0 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1142.6448 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQQ5;A0A1B0GTT3 P47897 487 496 QARS Glutamine--tRNA ligase yes no 2 0.00036715 81.972 By matching By MS/MS 1 1 0.9645 0.87427 45.823 2 Median 0.6734 0.63231 NaN 1 0 Median 1.3814 1.2088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9325800 4957200 4368600 5150700 3165400 1985300 4175100 1791700 2383300 0 0 0 0 0 0 0 0 0 0 0 0 21836 2356 22784 115351;115352 116344;116345 116345 2 LNLNGNWLLTASR LATLHAHKNTVMEVKLNLNGNWLLTASRDH VKLNLNGNWLLTASRDHLCKLFDIRNLKEE K L N S R D 1 1 3 0 0 0 0 1 0 0 4 0 0 0 0 1 1 1 0 0 0 0 13 0 1470.7943 Q9C0J8 Q9C0J8 296 308 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2 0.00031274 77.379 By MS/MS 1 0.86298 0.94667 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86298 0.94667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2656900 1289300 1367600 0 0 0 0 0 0 2656900 1289300 1367600 0 0 0 0 0 0 0 0 0 21837 3907 22785 115353 116346;116347 116347 2 LNLNNTVLSK EALGIRKPYIWEYSRLNLNNTVLSKRKLTW WEYSRLNLNNTVLSKRKLTWFVNEGLVDGW R L N S K R 0 0 3 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6346 P07814;V9GYZ6 P07814 426 435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00048844 118.71 By MS/MS By MS/MS By MS/MS 2 3 1 1.0534 0.94809 39.89 6 Median 0.88628 0.87081 24.567 2 0 Median 1.1555 1.031 12.107 3 0 Median NaN NaN NaN 0 0 Median 0.42307 0.38175 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80856000 41656000 39201000 41599000 22720000 18879000 35205000 16256000 18949000 0 0 0 4052600 2679500 1373100 0 0 0 0 0 0 21838 1892 22786 115354;115355;115356;115357;115358;115359 116348;116349;116350;116351;116352;116353 116348 6 LNLPDYYK HQFAWPFQQPVDAVKLNLPDYYKIIKTPMD QPVDAVKLNLPDYYKIIKTPMDMGTIKKRL K L N Y K I 0 0 1 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 2 0 0 0 8 0 1024.5229 O60885;M0QZD9;M0R0H4;M0QYW0 O60885 92 99 BRD4 Bromodomain-containing protein 4 yes no 2 0.031746 58.917 By MS/MS 2 1.2015 1.3175 6.5018 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2015 1.3175 6.5018 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22083000 9451100 12631000 0 0 0 0 0 0 22083000 9451100 12631000 0 0 0 0 0 0 0 0 0 21839 1638 22787 115360;115361 116354;116355 116354 2 LNLSQVR VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD DDLVSTGKLNLSQVRFLVLDEADGLLSQGY K L N V R F 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 828.48175 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 278 284 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.0024302 107.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1.2227 1.0884 6.2649 7 Median 1.1261 1.0657 NaN 1 0 Median 1.2118 1.0481 NaN 1 0 Median 1.1379 1.1873 6.6447 2 0 Median 1.2629 1.0884 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3306 1.1142 6.9224 2 0 Median 38597000 18026000 20571000 8231000 4002900 4228000 5912300 2561400 3350900 14333000 7155500 7177500 6451100 2772200 3678900 0 0 0 3670000 1534100 2136000 21840 135 22788 115362;115363;115364;115365;115366;115367;115368 116356;116357;116358;116359 116356 4 LNLSTRPEK DFLRTVYSVFGFSFKLNLSTRPEKFLGDIE FGFSFKLNLSTRPEKFLGDIEVWDQAEKQL K L N E K F 0 1 1 0 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 9 1 1056.5928 P26639 P26639 496 504 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0066122 81.972 By matching By MS/MS By MS/MS 1 1 1 0.83216 0.82278 4.4758 3 Median 0.83679 0.85664 NaN 1 0 Median 0.83006 0.82278 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83216 0.7834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18872000 9878500 8993200 2489000 1266300 1222700 12743000 6629600 6113200 0 0 0 3640000 1982700 1657300 0 0 0 0 0 0 21841 2147 22789 115369;115370;115371 116360;116361;116362 116361 3 LNLTEVEGLADLIHAETEAQR AEAGEFTRRAFANGKLNLTEVEGLADLIHA EGLADLIHAETEAQRRQALRQLDGELGHLC K L N Q R R 3 1 1 1 0 1 4 1 1 1 4 0 0 0 0 0 2 0 0 1 0 0 21 0 2321.1863 M0R0S9;Q969Y2 M0R0S9 153 173 GTPBP3 tRNA modification GTPase GTPBP3, mitochondrial yes no 3 1.1661E-06 44.105 By MS/MS 1 1.2605 1.0785 NaN 1 Median NaN NaN NaN 0 0 Median 1.2605 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2959000 1162700 1796300 0 0 0 2959000 1162700 1796300 0 0 0 0 0 0 0 0 0 0 0 0 21842 1429 22790 115372 116363 116363 1 LNLVDLAGSENIGR KETTIDGEELVKIGKLNLVDLAGSENIGRS KLNLVDLAGSENIGRSGAVDKRAREAGNIN K L N G R S 1 1 2 1 0 0 1 2 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1469.7838 P52732 P52732 261 274 KIF11 Kinesin-like protein KIF11 yes yes 2 8.8976E-08 98.943 By MS/MS By matching 1 1 2.5094 2.6332 40.729 2 Median 2.0459 1.9743 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.0779 3.5121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10803000 2522900 8279800 7848300 1887300 5961000 0 0 0 2954400 635560 2318800 0 0 0 0 0 0 0 0 0 21843 2454 22791 115373;115374 116364 116364 1 LNLVDLAGSER SEVGLDGENHIRVGKLNLVDLAGSERQAKT RVGKLNLVDLAGSERQAKTGAQGERLKEAT K L N E R Q 1 1 1 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1185.6354 O15066;H3BTL6;F8WAR6;B7Z896;F8WER6;F5H3M2;A0A0A0MRS8;O14782;Q9BVG8;Q9P2E2 O15066 241 251 KIF3B;KIFC3;KIF3C;KIF17 Kinesin-like protein KIF3B;Kinesin-like protein KIF3B, N-terminally processed;Kinesin-like protein;Kinesin-like protein KIF3C;Kinesin-like protein KIFC3;Kinesin-like protein KIF17 yes no 2 0.00029355 72.643 By MS/MS By matching 1 1 1.7693 1.679 11.49 2 Median 1.5626 1.548 NaN 1 0 Median 2.0032 1.8211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2483100 758380 1724700 1695000 579640 1115400 788060 178750 609310 0 0 0 0 0 0 0 0 0 0 0 0 21844 1517 22792 115375;115376 116365;116366 116365 2 LNLVGGMFDTVQR DCKPKQLMHEALKLRLNLVGGMFDTVQRST LRLNLVGGMFDTVQRSTQQTTEWAMLLLEI R L N Q R S 0 1 1 1 0 1 0 2 0 0 2 0 1 1 0 0 1 0 0 2 0 0 13 0 1448.7446 Q93074;Q7Z3Z5;F8WAE6;Q86YW9 Q93074 1537 1549 MED12;TNRC11;MED12L Mediator of RNA polymerase II transcription subunit 12;Mediator of RNA polymerase II transcription subunit 12-like protein yes no 2 0.00012318 84.17 By matching By MS/MS By matching By matching 2 1 1 1 1.0181 1.058 48.39 5 Median NaN NaN NaN 0 0 Median 0.62101 0.62416 74.635 2 0 Median 1.0181 1.1286 NaN 1 0 Median 1.3493 1.1815 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9881 0.85724 NaN 1 0 Median 8657500 5109300 3548200 0 0 0 4835500 3355400 1480200 3380400 1571700 1808700 270460 93506 176950 0 0 0 171130 88724 82408 21845 3578 22793 115377;115378;115379;115380;115381 116367 116367 1 LNLVVKPLEK DGKRLSDYSIGPNSKLNLVVKPLEKVLLEE GPNSKLNLVVKPLEKVLLEEGEAQRLADSP K L N E K V 0 0 1 0 0 0 1 0 0 0 3 2 0 0 1 0 0 0 0 2 0 0 10 1 1151.7278 P11441;Q5HY81 P11441 67 76 UBL4A Ubiquitin-like protein 4A yes no 2 0.0024792 93.598 By MS/MS By MS/MS By matching 1 1 1 1.1061 0.97792 7.9356 3 Median 0.89931 0.89719 NaN 1 0 Median 1.1061 0.97792 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1695 1.0513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16337000 8513300 7823700 13712000 7386800 6325700 2092000 873590 1218500 0 0 0 532580 252970 279610 0 0 0 0 0 0 21846 1965 22794 115382;115383;115384 116368;116369;116370 116369 3 LNLYELK LATDVQTVAQRLKFRLNLYELKEGRQIKPY VAQRLKFRLNLYELKEGRQIKPYTLMSMVA R L N L K E 0 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 7 0 891.50657 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 71 77 PSMB3 Proteasome subunit beta type-3 yes no 2 0.00777 88.029 By MS/MS By matching 2 2 1.0869 0.96044 8.4916 4 Median 0.98167 0.91598 12.067 2 0 Median 1.1304 0.96743 6.3898 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45495000 21919000 23577000 43070000 20785000 22286000 2424900 1133900 1291000 0 0 0 0 0 0 0 0 0 0 0 0 21847 2391 22795 115385;115386;115387;115388 116371;116372 116372 2 LNMATLR MGGEEAEIRFCEHKRLNMATLRMTWEAKVQ IRFCEHKRLNMATLRMTWEAKVQLKEILIN R L N L R M 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 7 0 817.44801 Q08211 Q08211 945 951 DHX9 ATP-dependent RNA helicase A yes yes 2 4.5047E-05 155.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 5 5 1.4434 1.3246 15.159 15 Median 1.3908 1.3656 NaN 1 0 Median 1.5609 1.3555 5.6383 2 0 Median 1.2053 1.3246 NaN 1 0 Median 1.4434 1.2275 NaN 1 0 Median 1.2399 1.2427 20.845 5 0 Median 1.6636 1.3834 17.742 5 1 Median 104450000 44821000 59626000 2452100 1021600 1430600 16406000 6107100 10299000 35926000 16310000 19616000 3170200 1172600 1997700 36921000 16525000 20396000 9571500 3684800 5886700 21848 2736 22796 115389;115390;115391;115392;115393;115394;115395;115396;115397;115398;115399;115400;115401;115402;115403 116373;116374;116375;116376;116377;116378;116379;116380;116381;116382;116383;116384;116385;116386;116387;116388;116389 116375 17 LNMTPEEAER CRIHQCISINMLADKLNMTPEEAERWIVNL MLADKLNMTPEEAERWIVNLIRNARLDAKI K L N E R W 1 1 1 0 0 0 3 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 10 0 1188.5445 P60228;E5RGA2;H0YAW4 P60228 360 369 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.00040727 97.431 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99072 0.94945 13.333 4 Median 0.92863 0.90292 NaN 1 0 Median 0.98681 0.83842 NaN 1 0 Median 0.99464 0.99837 NaN 1 0 Median 1.3177 1.1407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20267000 10079000 10188000 6467200 2939800 3527400 4344300 2206100 2138200 3829800 1768000 2061800 5626000 3165100 2460900 0 0 0 0 0 0 21849 2524 22797 115404;115405;115406;115407 116390;116391;116392;116393;116394;116395;116396 116390 7 LNNELLAK FILPDLGKLQQLEDKLNNELLAKFLEKKYA LQQLEDKLNNELLAKFLEKKYASSANLHLP K L N A K F 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 CON__P34955 CON__P34955 289 296 yes yes 2 7.2664E-09 134.81 By MS/MS By MS/MS 1 1 0.0020927 0.0020001 NaN 1 Median 0.0020927 0.0020001 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15255000 15245000 10626 5458500 5447800 10626 9796700 9796700 0 0 0 0 0 0 0 0 0 0 0 0 0 + 21850 763 22798 115408;115409 116397;116398 116398 2 LNNLVLFDK KAKKKKWSKGKVRDKLNNLVLFDKATYDKL GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K L N D K A 0 0 2 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1074.6073 P62851 P62851 44 52 RPS25 40S ribosomal protein S25 yes yes 2 0.00053852 116.37 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 4 2 2 1.2781 1.0817 7.3149 9 Median 1.0714 1.005 NaN 1 0 Median 1.2372 1.0533 3.7647 2 0 Median 1.15 1.1795 9.6422 2 0 Median 1.2521 1.15 5.4022 2 0 Median NaN NaN NaN 0 0 Median 1.3695 1.0567 2.0732 2 0 Median 90174000 42169000 48004000 66113000 32158000 33954000 10532000 4735700 5795800 5072000 2238200 2833800 782650 347110 435530 0 0 0 7674900 2690200 4984700 21851 2600 22799 115410;115411;115412;115413;115414;115415;115416;115417;115418;115419;115420 116399;116400;116401;116402;116403;116404;116405;116406 116400 8 LNNMNKYDYVLTGYTR VLNSDELQELYEGLRLNNMNKYDYVLTGYT NNMNKYDYVLTGYTRDKSFLAMVVDIVQEL R L N T R D 0 1 3 1 0 0 0 1 0 0 2 1 1 0 0 0 2 0 3 1 0 0 16 1 1963.9462 O00764;F2Z2Y4 O00764 71 86 PDXK Pyridoxal kinase yes no 2;3 3.6341E-10 100.41 By MS/MS By matching By matching By matching 3 1 1 1 1.1246 1.0887 24.581 6 Median 1.1872 1.1991 28.065 3 0 Plateau 1.4216 1.2944 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0938 1.0192 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83725 0.75687 NaN 1 0 Median 41781000 18853000 22928000 39758000 17918000 21840000 1478800 665620 813200 0 0 0 278530 130490 148040 0 0 0 265260 138210 127050 21852 1478 22800 115421;115422;115423;115424;115425;115426 116407;116408;116409;116410 116407 4 LNNSLHFAQVR GAFEKIPEFIAFRNRLNNSLHFAQVRTERM FRNRLNNSLHFAQVRTERMLLDLLLEANIS R L N V R T 1 1 2 0 0 1 0 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1297.6891 Q14CX7 Q14CX7 603 613 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 3 0.001054 48.998 By matching By MS/MS By matching 1 1 1 1.2084 1.1845 11.49 3 Median 1.3016 1.287 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1063 1.1845 NaN 1 0 Median 1.2084 1.0255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12191000 5564600 6626100 2032100 768710 1263400 0 0 0 4028200 1889500 2138700 6130500 2906400 3224100 0 0 0 0 0 0 21853 2908 22801 115427;115428;115429 116411;116412 116412 2 LNPADAPNPVVFVATK SGIRSSSQPAAKRQKLNPADAPNPVVFVAT NPADAPNPVVFVATKDTRALRKALTHLEMR K L N T K D 3 0 2 1 0 0 0 0 0 0 1 1 0 1 3 0 1 0 0 3 0 0 16 0 1651.8934 O94776 O94776 596 611 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.00013833 60.157 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.62276 0.64376 12.64 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56207 0.56351 NaN 1 0 Median 0.60601 0.52689 NaN 1 0 Median 0.62276 0.64376 NaN 1 0 Median 0.74601 0.69281 4.725 2 0 Median 24809000 15274000 9535700 0 0 0 0 0 0 18445000 11336000 7109200 1151200 676070 475110 4724200 3024700 1699400 488970 236990 251980 21854 1723 22802 115430;115431;115432;115433;115434 116413;116414;116415;116416;116417 116415 5 LNPASAEIMLLR YLEKARNVIKTLDPKLNPASAEIMLLRKQL DPKLNPASAEIMLLRKQLAEKERRIEILES K L N L R K 2 1 1 0 0 0 1 0 0 1 3 0 1 0 1 1 0 0 0 0 0 0 12 0 1326.733 Q9UJC3 Q9UJC3 624 635 HOOK1 Protein Hook homolog 1 yes yes 2 0.039613 26.514 By MS/MS 1 0.73776 0.73095 NaN 1 Median 0.73776 0.73095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1664700 922440 742290 1664700 922440 742290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21855 4295 22803 115435 116418 116418 1 LNPEDIKK VDAKAQKLLVGVDEKLNPEDIKKHLLVHAP LVGVDEKLNPEDIKKHLLVHAPEDKKEILA K L N K K H 0 0 1 1 0 0 1 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 8 1 955.53385 P53396 P53396 160 167 ACLY ATP-citrate synthase yes yes 2 0.010046 75.109 By MS/MS 2 1.0795 1.0002 11.965 2 Median NaN NaN NaN 0 0 Median 1.0795 1.0002 11.965 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23849000 11346000 12503000 0 0 0 23849000 11346000 12503000 0 0 0 0 0 0 0 0 0 0 0 0 21856 2467 22804 115436;115437 116419;116420 116420 2 LNPEMLQIAQDTGK LALIGFAEFVLHLNRLNPEMLQIAQDTGKL RLNPEMLQIAQDTGKLNVAYFRFDINDATG R L N G K L 1 0 1 1 0 2 1 1 0 1 2 1 1 0 1 0 1 0 0 0 0 0 14 0 1556.7868 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3680 3693 TRRAP Transformation/transcription domain-associated protein yes no 2 9.1225E-08 166.14 By MS/MS 1 0.71552 0.76322 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71552 0.76322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23862000 12691000 11172000 0 0 0 0 0 0 23862000 12691000 11172000 0 0 0 0 0 0 0 0 0 21857 991 22805 115438 116421;116422 116422 2 LNPINTTLLK DNSPAVEAVVECNSRLNPINTTLLKMADCG ECNSRLNPINTTLLKMADCGGLPQVVQPGK R L N L K M 0 0 2 0 0 0 0 0 0 1 3 1 0 0 1 0 2 0 0 0 0 0 10 0 1125.6758 Q9UGV2;F8WBF9;Q5TH30 Q9UGV2 277 286 NDRG3 Protein NDRG3 yes no 2 0.0016728 63.426 By MS/MS By matching By matching By matching 2 1 1 2 0.99605 0.98458 20.792 6 Median 0.84242 0.79329 20.011 2 0 Median 1.1603 1.0517 NaN 1 0 Median 0.94821 1.021 NaN 1 0 Median 1.2564 1.1109 22.201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37089000 19791000 17298000 33820000 18088000 15732000 384460 203410 181050 1923900 1054200 869730 960420 445600 514820 0 0 0 0 0 0 21858 4267 22806 115439;115440;115441;115442;115443;115444 116423 116423 1 LNPQQFEVLFR GLCQIHAFVDYLRSKLNPQQFEVLFRSVIS LRSKLNPQQFEVLFRSVISLVGFVLLTVGA K L N F R S 0 1 1 0 0 2 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 11 0 1389.7405 P46977;H0YET6 P46977 290 300 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes no 2 0.00014501 102.61 By MS/MS By MS/MS 1 2 1.7425 1.4731 17.95 3 Plateau 1.0523 1.0612 NaN 1 1 Median 1.5166 1.2842 20.05 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8926300 4356400 4569900 3571600 1862000 1709600 5354800 2494400 2860300 0 0 0 0 0 0 0 0 0 0 0 0 21859 2352 22807 115445;115446;115447 116424;116425 116425 2 LNQALLDLHALGSAR KTPDAMKAAMALEKKLNQALLDLHALGSAR LNQALLDLHALGSARTDPHLCDFLETHFLD K L N A R T 3 1 1 1 0 1 0 1 1 0 5 0 0 0 0 1 0 0 0 0 0 0 15 0 1590.8842 P02792 P02792 107 121 FTL Ferritin light chain yes yes 3 0.00037249 40.237 By MS/MS 1 1.2376 1.2444 NaN 1 Median 1.2376 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2414700 1045600 1369100 2414700 1045600 1369100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21860 1837 22808 115448 116426;116427 116426 2 LNQDQLDAVSK GKLDDYQERMNKGERLNQDQLDAVSKYQEV KGERLNQDQLDAVSKYQEVTNNLEFAKELQ R L N S K Y 1 0 1 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1229.6252 Q14444;E9PLA9;G3V153 Q14444 88 98 CAPRIN1 Caprin-1 yes no 2 0.00012339 137.98 By MS/MS By MS/MS By MS/MS 2 1 3 1.0402 0.9372 10.93 6 Median 1.0282 0.96825 4.5909 2 0 Median 1.0713 0.93708 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0416 0.90123 16.848 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51495000 25092000 26403000 18295000 9190100 9105000 17688000 8565500 9122100 0 0 0 15512000 7336400 8176100 0 0 0 0 0 0 21861 2878 22809 115449;115450;115451;115452;115453;115454 116428;116429;116430;116431;116432;116433;116434;116435;116436;116437 116435 10 LNQHNHFFHFDGSR DENLVPVAAAEGRPRLNQHNHFFHFDGSRI RLNQHNHFFHFDGSRIASWLPSFSVEVMHT R L N S R I 0 1 2 1 0 1 0 1 3 0 1 0 0 3 0 1 0 0 0 0 0 0 14 0 1754.8026 Q9UKV5 Q9UKV5 415 428 AMFR E3 ubiquitin-protein ligase AMFR yes yes 4 0.00024696 55.173 By MS/MS 1 1.248 0.99895 NaN 1 Median NaN NaN NaN 0 0 Median 1.248 0.99895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19200000 8948500 10252000 0 0 0 19200000 8948500 10252000 0 0 0 0 0 0 0 0 0 0 0 0 21862 4316 22810 115455 116438 116438 1 LNQLKPGLQYK EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ ALMRLNQLKPGLQYKLVSQTGPVHAPIFTM R L N Y K L 0 0 1 0 0 2 0 1 0 0 3 2 0 0 1 0 0 0 1 0 0 0 11 1 1300.7503 Q12906 Q12906 409 419 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 1.1196E-05 161.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 8 9 8 7 0.94059 0.94455 18.596 38 Median 0.92355 0.9484 10.549 3 0 Median 1.178 1.1351 18.754 4 0 Linear 0.85173 0.92418 24.357 8 0 Median 1.1385 1.053 24.951 8 0 Median 0.85701 0.93815 9.3244 8 0 Median 0.99602 0.88882 10.377 7 0 Median 779340000 411510000 367830000 28676000 14089000 14586000 16000000 7577000 8423200 194630000 107160000 87470000 43475000 20424000 23051000 403060000 216340000 186720000 93497000 45920000 47577000 21863 2769 22811 115456;115457;115458;115459;115460;115461;115462;115463;115464;115465;115466;115467;115468;115469;115470;115471;115472;115473;115474;115475;115476;115477;115478;115479;115480;115481;115482;115483;115484;115485;115486;115487;115488;115489;115490;115491;115492;115493;115494 116439;116440;116441;116442;116443;116444;116445;116446;116447;116448;116449;116450;116451;116452;116453;116454;116455;116456;116457;116458;116459;116460;116461;116462;116463;116464;116465;116466;116467;116468;116469;116470;116471;116472;116473;116474;116475;116476;116477;116478;116479;116480;116481;116482;116483;116484;116485;116486;116487;116488;116489;116490;116491 116486 53 LNQLLLPLLQGPDITLSK SRTGEGAVSLMERRRLNQLLLPLLQGPDIT LLLPLLQGPDITLSKLYKLIEESCPQLANS R L N S K L 0 0 1 1 0 2 0 1 0 1 7 1 0 0 2 1 1 0 0 0 0 0 18 0 1975.1718 F5H0F9;Q9UJX4 F5H0F9 60 77 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.00028408 42.556 By matching By MS/MS By MS/MS 1 1 2 0.7024 0.72408 15.61 4 Median 0.75499 0.75472 NaN 1 0 Median 1.0429 0.94225 NaN 1 1 Median 0.64067 0.67838 3.3594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961400 2251800 1709600 212130 115570 96561 712410 306790 405610 3036900 1829400 1207400 0 0 0 0 0 0 0 0 0 21864 1019 22812 115495;115496;115497;115498 116492;116493;116494 116493 3 LNQLWEK PSPKRESGEEFRMEKLNQLWEKAQRLHLPP GEEFRMEKLNQLWEKAQRLHLPPVRLAELH K L N E K A 0 0 1 0 0 1 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 7 0 929.49707 P30533;A0A3B3IRQ7;D6REW6 P30533 59 65 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 0.010865 81.297 By matching By matching By matching By MS/MS 2 1 1 1 1.3989 1.2724 19.131 5 Median 1.3459 1.2611 29.855 2 0 Median 1.3519 1.2724 NaN 1 0 Median 1.527 1.6126 NaN 1 0 Median 1.3989 1.1834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19394000 8285300 11108000 4916100 2159300 2756900 6648800 3111100 3537700 5280100 2002100 3278000 2548600 1012800 1535800 0 0 0 0 0 0 21865 2196 22813 115499;115500;115501;115502;115503 116495 116495 1 LNQPELVAQK ARDCISWVGDEGEFKLNQPELVAQKWGQRK EGEFKLNQPELVAQKWGQRKNKPTMNYEKL K L N Q K W 1 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1138.6346 Q06546 Q06546 350 359 GABPA GA-binding protein alpha chain yes yes 2 0.00036361 82.426 By MS/MS By MS/MS 1 2 0.88254 0.7667 3.445 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72863 0.74446 NaN 1 0 Median 0.88996 0.74376 4.8714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10074000 5555400 4518200 0 0 0 0 0 0 3308700 2211300 1097400 6764900 3344100 3420800 0 0 0 0 0 0 21866 2726 22814 115504;115505;115506 116496;116497;116498;116499;116500 116499 5 LNQPPEDGISSVK ______________________________ FKLNQPPEDGISSVKFSPNTSQFLLVSSWD K L N V K F 0 0 1 1 0 1 1 1 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 0 1382.7042 O43684;J3QT28;J3QSX4 O43684 9 21 BUB3 Mitotic checkpoint protein BUB3 yes no 2 3.8991E-05 90.685 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 0.76054 0.71527 10.62 6 Median 0.91203 0.852 NaN 1 0 Median 0.88245 0.75591 NaN 1 0 Median 0.70691 0.70461 8.1705 3 1 Plateau 0.80779 0.69253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127960000 70580000 57381000 6095100 3083200 3011900 4655100 2417600 2237400 79974000 44819000 35156000 37237000 20261000 16977000 0 0 0 0 0 0 21867 1357 22815 115507;115508;115509;115510;115511;115512 116501;116502;116503;116504;116505;116506;116507;116508;116509;116510;116511;116512;116513;116514;116515;116516 116515 16 LNQPQPDFTK CSLHGKKCTVSVETRLNQPQPDFTKNRSGF SVETRLNQPQPDFTKNRSGFILSVPGN___ R L N T K N 0 0 1 1 0 2 0 0 0 0 1 1 0 1 2 0 1 0 0 0 0 0 10 0 1186.5982 K7EIG7;O94832 K7EIG7 897 906 MYO1D Unconventional myosin-Id yes no 2 0.063555 41.448 By MS/MS 1 2.7082 2.2965 NaN 1 Median NaN NaN NaN 0 0 Median 2.7082 2.2965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7847700 2491900 5355800 0 0 0 7847700 2491900 5355800 0 0 0 0 0 0 0 0 0 0 0 0 21868 1359 22816 115513 116517 116517 1 LNQSGTSVGTDEESDVTQEEER FSFKSALSPSKSPAKLNQSGTSVGTDEESD VGTDEESDVTQEEERDGQYFEPVVPLPDLV K L N E R D 0 1 1 2 0 2 5 2 0 0 1 0 0 0 0 3 3 0 0 2 0 0 22 0 2409.0415 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 2284 2305 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2;3 2.7538E-23 118.47 By MS/MS By MS/MS 3 3 0.91198 0.91808 15.516 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86203 0.93562 11.635 3 0 Median 1.0349 0.90086 19.044 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19664000 10216000 9447200 0 0 0 0 0 0 13894000 7455500 6438700 5769500 2760900 3008500 0 0 0 0 0 0 21869 2401;525 22817 115514;115515;115516;115517;115518;115519 116518;116519;116520;116521;116522;116523 116523 6 LNQSPSLAPVKR GKTQNGQDKTNAPSRLNQSPSLAPVKRTYE PSRLNQSPSLAPVKRTYEQMEFPLLKKRKL R L N K R T 1 1 1 0 0 1 0 0 0 0 2 1 0 0 2 2 0 0 0 1 0 0 12 1 1308.7514 Q9H2P0;A0A2R8Y6X0 Q9H2P0 706 717 ADNP Activity-dependent neuroprotector homeobox protein yes no 2;3 0.00014081 72.958 By MS/MS By MS/MS 1 5 0.72621 0.81247 15.951 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62951 0.7169 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74755 0.84511 15.409 5 2 Median NaN NaN NaN 0 0 Median 24481000 13652000 10828000 0 0 0 0 0 0 2122600 1343400 779220 0 0 0 22358000 12309000 10049000 0 0 0 21870 3946 22818 115520;115521;115522;115523;115524;115525 116524;116525;116526;116527;116528;116529 116526 5 LNQSQREELGLIEQAYDNPHEALSR LALERLKEAYSVKSRLNQSQREELGLIEQA LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R L N S R I 2 2 2 1 0 3 4 1 1 1 4 0 0 0 1 2 0 0 1 0 0 0 25 1 2909.4268 Q6P2Q9;I3L0J9 Q6P2Q9 856 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 4 4.7603E-17 63.115 By MS/MS 2 0.89725 1.1121 8.9862 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89725 1.1121 8.9862 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16348000 8666300 7681600 0 0 0 0 0 0 16348000 8666300 7681600 0 0 0 0 0 0 0 0 0 21871 3157 22819 115526;115527 116530;116531 116531 2 LNQTTFTATR AVPTLGLKTDAIPGRLNQTTFTATRPGVYY AIPGRLNQTTFTATRPGVYYGQCSEICGAN R L N T R P 1 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 4 0 0 0 0 0 10 0 1151.5935 P00403 P00403 179 188 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 0.00036469 82.287 By MS/MS By MS/MS 1 1 0.73701 0.66761 22.696 2 Median 0.57482 0.56863 NaN 1 0 Median 0.94498 0.78383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9869900 5470200 4399700 5101300 2886100 2215100 4768700 2584100 2184600 0 0 0 0 0 0 0 0 0 0 0 0 21872 1819 22820 115528;115529 116532;116533;116534 116532 3 LNQVIFPVSYNDK ELGDVTPHNIKQLKRLNQVIFPVSYNDKFY KRLNQVIFPVSYNDKFYKDVLEVGELAKLG R L N D K F 0 0 2 1 0 1 0 0 0 1 1 1 0 1 1 1 0 0 1 2 0 0 13 0 1535.7984 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;C9J5J3;A0A0D9SF32;C9JZU6;F8WCK0 C9J5D1 22 34 NAA50 N-alpha-acetyltransferase 50 yes no 2 2.3763E-06 120.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1133 0.98096 12.28 4 Median 1.2602 1.1902 NaN 1 1 Median 1.0628 0.92233 NaN 1 0 Median 1.1133 1.0433 NaN 1 0 Median 1.1133 0.91853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24488000 11981000 12508000 10492000 4966000 5526100 1397700 665490 732210 11807000 5975700 5831000 791520 373330 418190 0 0 0 0 0 0 21873 677 22821 115530;115531;115532;115533 116535;116536;116537;116538;116539;116540 116537 6 LNQVIFPVSYNDKFYK ELGDVTPHNIKQLKRLNQVIFPVSYNDKFY NQVIFPVSYNDKFYKDVLEVGELAKLGTKM R L N Y K D 0 0 2 1 0 1 0 0 0 1 1 2 0 2 1 1 0 0 2 2 0 0 16 1 1974.0251 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;C9J5J3;A0A0D9SF32;C9JZU6;F8WCK0 C9J5D1 22 37 NAA50 N-alpha-acetyltransferase 50 yes no 3 0.0054672 26.148 By matching By MS/MS 1 1 1.0888 1.0338 8.5403 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0959 1.0981 NaN 1 0 Median 1.0818 0.97321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4312300 2164300 2148000 0 0 0 0 0 0 3141500 1571700 1569800 1170700 592600 578120 0 0 0 0 0 0 21874 677 22822 115534;115535 116541 116541 1 LNQWCNVVR AYAKWVQSHRDLPIKLNQWCNVVRWEFKHP RDLPIKLNQWCNVVRWEFKHPQPFLRTREF K L N V R W 0 1 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 9 0 1187.587 P07814 P07814 1144 1152 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.0028856 68.915 By MS/MS 1 1.185 1.004 NaN 1 Median NaN NaN NaN 0 0 Median 1.185 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2891500 1084800 1806700 0 0 0 2891500 1084800 1806700 0 0 0 0 0 0 0 0 0 0 0 0 21875 1892 22823 115536 116542;116543 116543 2 LNQYFQK AGLHGNWTLENAKARLNQYFQKEKIQGEYK TLENAKARLNQYFQKEKIQGEYKYTQVGPD R L N Q K E 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 939.48142 Q08211 Q08211 185 191 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00016935 124.86 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 3 3 1.2015 1.2292 41.521 13 Median 1.2717 1.2292 NaN 1 0 Median 1.1928 1.0071 33.135 3 0 Median 0.59668 0.65627 94.571 2 0 Median 1.604 1.3761 NaN 1 0 Median 1.0774 1.1285 30.265 3 2 Median 1.7699 1.4537 23.967 3 1 Plateau 119710000 54624000 65084000 460710 182950 277760 35407000 14922000 20485000 22609000 11229000 11380000 3256900 1224500 2032400 47247000 22684000 24563000 10727000 4381900 6345200 21876 2736 22824 115537;115538;115539;115540;115541;115542;115543;115544;115545;115546;115547;115548;115549 116544;116545;116546;116547;116548;116549;116550;116551;116552;116553;116554;116555;116556;116557 116548 14 LNRLPAAGVGDMVMATVK AKNLYIISVKGIKGRLNRLPAAGVGDMVMA LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L N V K K 3 1 1 1 0 0 0 2 0 0 2 1 2 0 1 0 1 0 0 3 0 0 18 1 1841.9856 P62829;C9JD32;J3KT29;B9ZVP7 P62829 49 66 RPL23 60S ribosomal protein L23 yes no 2;3 5.9221E-14 113.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 8 3 6 2 0.96859 0.97337 13.425 26 Median 0.95063 0.94031 7.6051 7 0 Median 1.0443 0.92175 12.088 8 0 Median 0.99407 1.0287 6.4137 3 0 Median NaN NaN NaN 0 0 Median 0.93605 1.0564 14.01 6 0 Median 1.058 0.84736 15.936 2 0 Median 297340000 147250000 150090000 151680000 76621000 75056000 36293000 17234000 19059000 67814000 33086000 34727000 0 0 0 38022000 18590000 19431000 3532300 1720900 1811400 21877 2598 22825;22826;22827 115550;115551;115552;115553;115554;115555;115556;115557;115558;115559;115560;115561;115562;115563;115564;115565;115566;115567;115568;115569;115570;115571;115572;115573;115574;115575 116558;116559;116560;116561;116562;116563;116564;116565;116566;116567;116568;116569;116570;116571;116572;116573;116574;116575;116576;116577;116578;116579;116580;116581;116582;116583;116584;116585;116586;116587 116561 1265;1266 30 LNRLPAAGVGDMVMATVKK AKNLYIISVKGIKGRLNRLPAAGVGDMVMA PAAGVGDMVMATVKKGKPELRKKVHPAVVI R L N K K G 3 1 1 1 0 0 0 2 0 0 2 2 2 0 1 0 1 0 0 3 0 0 19 2 1970.0805 P62829;C9JD32;J3KT29;B9ZVP7 P62829 49 67 RPL23 60S ribosomal protein L23 yes no 4 1.9878E-05 46.621 By MS/MS 1 0.98906 1.0397 NaN 1 Median 0.98906 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6790100 3363900 3426200 6790100 3363900 3426200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21878 2598 22828 115576 116588;116589 116589 2 LNRPLTLSEK HYDLLEKNINIVRKRLNRPLTLSEKIVYGH IVRKRLNRPLTLSEKIVYGHLDDPASQEIE R L N E K I 0 1 1 0 0 0 1 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 10 1 1169.6768 A2A274;Q99798 A2A274 59 68 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.0027367 93.649 By MS/MS By MS/MS 1 1 0.96975 0.98094 38.992 2 Median 0.72655 0.74456 NaN 1 0 Median 1.2944 1.2924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5973700 3132600 2841100 3096600 1789400 1307200 2877100 1343200 1533900 0 0 0 0 0 0 0 0 0 0 0 0 21879 495 22829 115577;115578 116590;116591;116592 116592 3 LNRYPASSLVVVR KLSIYGDLEFMNEQKLNRYPASSLVVVRSK QKLNRYPASSLVVVRSKTEDHEEAGPLPTK K L N V R S 1 2 1 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 3 0 0 13 1 1472.8463 Q5T6Z8;Q9BXS4 Q5T6Z8 157 169 TMEM59 Transmembrane protein 59 yes no 3 1.5885E-07 110.92 By matching By MS/MS 1 1 1.4133 1.3035 35.891 2 Median 1.6839 1.6801 NaN 1 0 Median 1.1862 1.0113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12568000 5292400 7275800 2240500 787710 1452800 10328000 4504700 5823000 0 0 0 0 0 0 0 0 0 0 0 0 21880 3094 22830 115579;115580 116593;116594 116594 2 LNSAIIYDR VAKSTLDIVLANKDRLNSAIIYDRDFSYNY LANKDRLNSAIIYDRDFSYNYFGFKTLERS R L N D R D 1 1 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1063.5662 P23921 P23921 131 139 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.00055412 114.89 By MS/MS By MS/MS By matching 1 1 1 1.2679 1.1071 4.1536 3 Plateau 1.221 1.1554 NaN 1 0 Median 1.2802 1.1071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1094 1.0633 NaN 1 0 Median 31625000 13712000 17913000 9980900 4747900 5233000 21186000 8728200 12458000 0 0 0 0 0 0 0 0 0 458020 235460 222560 21881 2121 22831 115581;115582;115583 116595;116596;116597;116598 116596 4 LNSAIIYDRDFSYNYFGFK VAKSTLDIVLANKDRLNSAIIYDRDFSYNY IIYDRDFSYNYFGFKTLERSYLLKINGKVA R L N F K T 1 1 2 2 0 0 0 1 0 2 1 1 0 3 0 2 0 0 3 0 0 0 19 1 2332.1164 P23921 P23921 131 149 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 3 0.00066825 31.41 By MS/MS By matching 1 1 1.2626 1.2823 4.8187 2 Median 1.2924 1.3267 NaN 1 0 Median 1.2336 1.2393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9118800 4094000 5024800 8562400 3801600 4760800 556410 292410 264000 0 0 0 0 0 0 0 0 0 0 0 0 21882 2121 22832 115584;115585 116599;116600 116600 2 LNSGGGLSEELGSAR HSLGKVTSDLAKRRKLNSGGGLSEELGSAR LNSGGGLSEELGSARRSGEVTLTKGDPGSL K L N A R R 1 1 1 0 0 0 2 4 0 0 3 0 0 0 0 3 0 0 0 0 0 0 15 0 1445.711 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7 A0A0G2JIS2 230 244 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 2 4.8288E-07 89.013 By MS/MS By MS/MS 1 1 1.4867 1.5907 3.8353 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.408 1.5481 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5698 1.6344 NaN 1 1 Median NaN NaN NaN 0 0 Median 17889000 6177200 11711000 0 0 0 0 0 0 11886000 3841500 8044100 0 0 0 6003000 2335700 3667400 0 0 0 21883 277 22833 115586;115587 116601;116602 116601 2 LNSGVDYR SDFLKQIIGRPVVVKLNSGVDYRGVLACLD GRPVVVKLNSGVDYRGVLACLDGYMNIALE K L N Y R G 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 922.45084 P62312 P62312 24 31 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.0035928 86.794 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 1.1444 1.0138 10.578 7 Median 1.2086 1.1587 10.611 2 0 Median 1.276 1.0321 NaN 1 0 Median 1.0142 1.0138 NaN 1 0 Median 1.3146 0.94939 NaN 1 0 Median 0.9885 1.0062 NaN 1 0 Median 1.1444 0.89159 NaN 1 0 Median 24278000 11375000 12904000 6553400 2853600 3699800 3369400 1447800 1921600 7979200 4172700 3806500 3865000 1731200 2133800 1672100 786040 886050 839220 383440 455780 21884 2584 22834 115588;115589;115590;115591;115592;115593;115594 116603;116604;116605;116606;116607 116605 5 LNSHMNALHLGSQANR SYVAGQYDDAASYQRLNSHMNALHLGSQAN NSHMNALHLGSQANRLFYLALPPTVYEAVT R L N N R L 2 1 3 0 0 1 0 1 2 0 3 0 1 0 0 2 0 0 0 0 0 0 16 0 1761.8693 P11413;E7EUI8;E9PD92;E7EM57 P11413 121 136 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 3;4 4.4222E-06 84.41 By MS/MS By MS/MS By matching 4 2 1 1.0838 1.0508 20.305 7 Median 1.0998 1.0578 15.819 4 0 Median 0.94752 0.80295 0.76824 2 0 Median 1.1346 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42591000 20209000 22382000 30565000 13913000 16653000 10584000 5511500 5072100 1441700 784700 656990 0 0 0 0 0 0 0 0 0 21885 1964 22835 115595;115596;115597;115598;115599;115600;115601 116608;116609;116610;116611;116612;116613;116614;116615;116616;116617;116618;116619 116617 12 LNSIGNYYKPWFFK VIMTGVMTDEAEPSKLNSIGNYYKPWFFKH KLNSIGNYYKPWFFKHVENYLKTNREGLEY K L N F K H 0 0 2 0 0 0 0 1 0 1 1 2 0 2 1 1 0 1 2 0 0 0 14 1 1775.9035 A0A0A0MTI1;Q15392 A0A0A0MTI1 293 306 DHCR24 Delta(24)-sterol reductase yes no 3 0.015056 24.558 By MS/MS By matching 1 1 0.84201 0.86045 15.344 2 Median 0.88017 0.95906 NaN 1 0 Median 0.80551 0.77198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9465500 4908500 4557100 9319300 4825700 4493600 146250 82788 63465 0 0 0 0 0 0 0 0 0 0 0 0 21886 192 22836 115602;115603 116620;116621 116621 2 LNSILTQPWR FSAEGMDTFIRVLQKLNSILTQPWRLHVNM RVLQKLNSILTQPWRLHVNMGTTLHRVTTI K L N W R L 0 1 1 0 0 1 0 0 0 1 2 0 0 0 1 1 1 1 0 0 0 0 10 0 1226.6772 Q69YN4;H0YBN5 Q69YN4 979 988 KIAA1429 Protein virilizer homolog yes no 2 0.00057505 93.551 By MS/MS 1 0.65402 0.72317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65402 0.72317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4019100 2403200 1616000 0 0 0 0 0 0 4019100 2403200 1616000 0 0 0 0 0 0 0 0 0 21887 3130 22837 115604 116622 116622 1 LNSKPPNIGFK HKKIIENELEGFGIRLNSKPPNIGFKKKDK FGIRLNSKPPNIGFKKKDKGGINLTATCPQ R L N F K K 0 0 2 0 0 0 0 1 0 1 1 2 0 1 2 1 0 0 0 0 0 0 11 1 1213.6819 Q9Y295 Q9Y295 172 182 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2;3 0.0051195 57.032 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.8273 0.75527 10.388 5 Median 0.75887 0.70797 0.3238 2 0 Median 0.90517 0.82051 NaN 1 0 Median 0.8273 0.90153 NaN 1 0 Median 0.84819 0.75527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27518000 14475000 13044000 11098000 5782500 5315200 1936900 999440 937510 10297000 5350300 4946400 4187100 2342600 1844500 0 0 0 0 0 0 21888 4382 22838 115605;115606;115607;115608;115609 116623;116624;116625;116626;116627;116628;116629 116625 7 LNSLAIGLR LAAPLLKRLSLSTSKLNSLAIGLRQIAASS SLSTSKLNSLAIGLRQIAASSQDSVGRVLR K L N L R Q 1 1 1 0 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 9 0 955.58147 P54886 P54886 433 441 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 7.1721E-05 119.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 4 2 1 1 1.2477 1.1694 17.2 10 Median 1.0793 1.0207 NaN 1 0 Median 1.3983 1.2094 0.43093 2 2 Median 1.2594 1.2618 30.157 3 1 Plateau 1.137 0.98383 13.928 2 0 Median 1.1762 1.2412 NaN 1 0 Median 1.3993 1.1343 NaN 1 0 Median 174700000 78541000 96157000 25780000 12460000 13320000 52655000 23582000 29073000 84426000 37486000 46940000 4342900 1954100 2388800 3828600 1541300 2287300 3666400 1518200 2148200 21889 2488 22839 115610;115611;115612;115613;115614;115615;115616;115617;115618;115619;115620 116630;116631;116632;116633;116634;116635;116636;116637;116638 116632 9 LNSLCMAWLVDHVYAIR PLLAGQLGVEFFDEKLNSLCMAWLVDHVYA SLCMAWLVDHVYAIREAATSNLKKLVEKFG K L N I R E 2 1 1 1 1 0 0 0 1 1 3 0 1 0 0 1 0 1 1 2 0 0 17 0 2060.0336 P30153;B3KQV6;P30154 P30153 443 459 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 3 0.056564 9.5303 By MS/MS 1 1.0947 0.94685 NaN 1 Median NaN NaN NaN 0 0 Median 1.0947 0.94685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1953700 791830 1161900 0 0 0 1953700 791830 1161900 0 0 0 0 0 0 0 0 0 0 0 0 21890 2190;2191 22840 115621 116639 116639 1 LNSLMSLVNK RPKDPNNLLNDWSQKLNSLMSLVNKTTHLI DWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ K L N N K T 0 0 2 0 0 0 0 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 10 0 1117.6165 O00232 O00232 432 441 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0057065 50.04 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3094 1.1381 17.018 4 Median 1.0664 0.98225 NaN 1 0 Median 1.2594 1.0665 NaN 1 0 Median 1.4733 1.4511 NaN 1 0 Median 1.3612 1.2146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52513000 24304000 28209000 30903000 14896000 16008000 15893000 6938300 8954500 5255300 2278700 2976600 461000 190820 270190 0 0 0 0 0 0 21891 1449 22841 115622;115623;115624;115625 116640;116641;116642;116643 116640 4 LNSNTQVVLLSATMPSDVLEVTK LSRGFKDQIYDIFQKLNSNTQVVLLSATMP LLSATMPSDVLEVTKKFMRDPIRILVKKEE K L N T K K 1 0 2 1 0 1 1 0 0 0 4 1 1 0 1 3 3 0 0 4 0 0 23 0 2458.2989 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3KTN0 P60842 203 225 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2 0.017059 23.481 By MS/MS By matching By matching 2 1 1 0.90144 0.8184 17.567 4 Median NaN NaN NaN 0 0 Median 0.93851 0.8184 16.092 2 0 Median 0.95317 1.0385 NaN 1 0 Median 0.81744 0.72824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5734700 2939000 2795600 0 0 0 5127900 2631500 2496400 351240 179860 171380 255500 127690 127810 0 0 0 0 0 0 21892 2529 22842 115626;115627;115628;115629 116644;116645 116644 2 LNSNTQVVLLSATMPSDVLEVTKK LSRGFKDQIYDIFQKLNSNTQVVLLSATMP LSATMPSDVLEVTKKFMRDPIRILVKKEEL K L N K K F 1 0 2 1 0 1 1 0 0 0 4 2 1 0 1 3 3 0 0 4 0 0 24 1 2586.3939 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3KTN0 P60842 203 226 EIF4A1 Eukaryotic initiation factor 4A-I yes no 3 1.0252E-29 118.22 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 0.95466 0.91548 11.272 5 Median 0.95466 0.91548 NaN 1 0 Median 0.92577 0.85236 15.58 2 0 Median 0.9718 1.0126 NaN 1 0 Median 0.87082 0.82712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52231000 25381000 26850000 6120600 2927500 3193100 16300000 7993800 8306700 18787000 9150300 9636900 11023000 5309000 5713700 0 0 0 0 0 0 21893 2529 22843 115630;115631;115632;115633;115634 116646;116647;116648;116649 116648 4 LNSSVQLAGLR KVYMNQVCDDTITSRLNSSVQLAGLRLLTN ITSRLNSSVQLAGLRLLTNMTVTNEYQHML R L N L R L 1 1 1 0 0 1 0 1 0 0 3 0 0 0 0 2 0 0 0 1 0 0 11 0 1156.6564 Q9UH62 Q9UH62 216 226 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.00014929 116.05 By MS/MS By MS/MS By matching 1 1 1 1.5784 1.3503 19.538 3 Median 0.97226 0.96958 NaN 1 0 Median 1.5876 1.3692 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5784 1.3503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14265000 6487300 7777600 12834000 5949900 6884100 997770 360010 637760 0 0 0 433080 177380 255700 0 0 0 0 0 0 21894 4269 22844 115635;115636;115637 116650;116651 116650 2 LNSVLEVEK LLDEISLADDSVLERLNSVLEVEKSLVLAE DSVLERLNSVLEVEKSLVLAEKGSPEDKDS R L N E K S 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 1029.5706 Q9NU22 Q9NU22 1481 1489 MDN1 Midasin yes yes 2 0.00072447 102.07 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2435 1.0976 5.3828 4 Median NaN NaN NaN 0 0 Median 1.2355 1.0793 NaN 1 0 Median 1.0455 1.1162 NaN 1 0 Median 1.2544 1.206 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2515 1.0727 NaN 1 0 Median 26395000 12487000 13908000 0 0 0 5501100 2607600 2893500 17693000 8552400 9140500 2021100 779100 1242000 0 0 0 1180100 547870 632280 21895 4112 22845 115638;115639;115640;115641 116652;116653;116654;116655;116656 116652 5 LNSVQSSERPLFLVHPIEGSTTVFHSLASR LRSLLVNPEGPTLMRLNSVQSSERPLFLVH PIEGSTTVFHSLASRLSIPTYGLQCTRAAP R L N S R L 1 2 1 0 0 1 2 1 2 1 4 0 0 2 2 6 2 0 0 3 0 0 30 1 3307.7313 P49327;A0A0U1RQF0 P49327 2234 2263 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3;4;5 1.1131E-54 131.95 By MS/MS By MS/MS By matching 7 6 1 0.75494 0.82937 20.372 14 Median 0.7517 0.80388 7.7148 7 0 Median 1.0529 0.9868 29.65 6 1 Median 0.68548 0.86593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 179750000 90680000 89072000 96055000 52976000 43079000 82007000 36754000 45253000 1690100 950370 739740 0 0 0 0 0 0 0 0 0 21896 2377 22846 115642;115643;115644;115645;115646;115647;115648;115649;115650;115651;115652;115653;115654;115655 116657;116658;116659;116660;116661;116662;116663;116664;116665;116666;116667;116668 116663 12 LNSYIQGK ESMDWDSAIQTGFTKLNSYIQGKNEKEMKI IQTGFTKLNSYIQGKNEKEMKIKMTAPVTS K L N G K N 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 0 8 0 921.49198 Q9Y5Z4;Q5THN1;C9IZA0 Q9Y5Z4 69 76 HEBP2 Heme-binding protein 2 yes no 2 0.022207 45.081 By MS/MS 1 0.9304 0.8888 NaN 1 Median 0.9304 0.8888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2061200 1076500 984700 2061200 1076500 984700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21897 4473 22847 115656 116669 116669 1 LNTAEDAKDVIK QVAGGQLSFKGKSLKLNTAEDAKDVIKEIE SLKLNTAEDAKDVIKEIEDFDSLEALRLEG K L N I K E 2 0 1 2 0 0 1 0 0 1 1 2 0 0 0 0 1 0 0 1 0 0 12 1 1315.6983 P46060;B0QYT5;B0QYT4 P46060 32 43 RANGAP1 Ran GTPase-activating protein 1 yes no 2;3 0.00045801 56.258 By matching By MS/MS 1 2 1.0066 1.1305 5.501 3 Median NaN NaN NaN 0 0 Median 1.2563 1.2147 NaN 1 0 Median 0.99401 1.1102 2.5593 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22459000 11244000 11215000 0 0 0 1553200 640710 912510 20905000 10603000 10303000 0 0 0 0 0 0 0 0 0 21898 2336 22848 115657;115658;115659 116670;116671 116670 2 LNTDPMLLQFFK NRMNYFQVAKTVAQRLNTDPMLLQFFKSQG AQRLNTDPMLLQFFKSQGYRDGPGNPLRHN R L N F K S 0 0 1 1 0 1 0 0 0 0 3 1 1 2 1 0 1 0 0 0 0 0 12 0 1465.7639 Q93009;H3BND8 Q93009 830 841 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0081325 38.086 By MS/MS By matching By MS/MS 2 1 2 0.83856 0.87398 5.2434 5 Median 0.9051 0.89966 7.7384 2 0 Median 1.0253 0.88109 NaN 1 0 Median 0.80843 0.8493 4.0505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10140000 5101500 5038000 6846700 3508500 3338200 821390 377920 443470 2471500 1215100 1256400 0 0 0 0 0 0 0 0 0 21899 3574 22849 115660;115661;115662;115663;115664 116672;116673 116672 2 LNTGILNK LFMENKQPEDDLFDRLNTGILNKHLQDLME EDDLFDRLNTGILNKHLQDLMEGLTAKVFR R L N N K H 0 0 2 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 871.51272 P11387 P11387 568 575 TOP1 DNA topoisomerase 1 yes yes 2 3.7272E-09 172.03 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 4 3 1.4238 1.2362 34.12 12 Median 2.6235 2.6627 NaN 1 0 Median 1.44 1.272 NaN 1 0 Median 1.1408 1.2286 30.583 3 0 Median 1.425 1.2265 29.287 4 1 Median NaN NaN NaN 0 0 Median 1.4078 1.1573 25.873 3 1 Median 92117000 40012000 52105000 1502300 509540 992770 2276300 965650 1310700 44998000 20569000 24430000 35040000 13968000 21071000 0 0 0 8300300 3999700 4300600 21900 1962 22850 115665;115666;115667;115668;115669;115670;115671;115672;115673;115674;115675;115676 116674;116675;116676;116677;116678;116679;116680;116681 116677 8 LNTHVKPLIWIESVIEK SFIPPDGEFELMSYRLNTHVKPLIWIESVI THVKPLIWIESVIEKHSHSRIEYMIKGGKE R L N E K H 0 0 1 0 0 0 2 0 1 3 2 2 0 0 1 1 1 1 0 2 0 0 17 1 2018.1564 E7ENJ6;Q9BXS5;K7EJL1;K7EQX3 E7ENJ6 269 285 AP1M1 AP-1 complex subunit mu-1 yes no 3 6.2484E-05 47.754 By MS/MS By MS/MS By matching 2 1 1 0.93704 0.88508 24.457 4 Median NaN NaN NaN 0 0 Median 1.035 0.95318 7.7837 2 0 Median 0.54705 0.57596 NaN 1 1 Median 0.91422 0.86835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13365000 7298900 6066500 0 0 0 9834000 5092300 4741700 2902800 1940700 962170 628620 265970 362650 0 0 0 0 0 0 21901 864 22851 115677;115678;115679;115680 116682;116683;116684 116684 3 LNTILAQIMPFLSQEHQQQVAQAVER GLNIEMHKQTEIAKRLNTILAQIMPFLSQE LSQEHQQQVAQAVERAKQVTMTELNAIIGV R L N E R A 3 1 1 0 0 6 2 0 1 2 3 0 1 1 1 1 1 0 0 2 0 0 26 0 2991.56 F5H7D6;H0YNT2;A0A0D9SES8;H0YKT5;H0YKN8;H0YL70;Q04726;H0YKH0;H0YLW9;H0YLI3 F5H7D6 19 44 TLE3 Transducin-like enhancer protein 3 yes no 3 0.064849 6.1606 By MS/MS By matching 1 1 1.0535 1.004 7.2989 2 Median 0.96138 0.95346 NaN 1 0 Median 1.1544 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2046400 1066400 979990 1474200 787000 687190 572220 279430 292800 0 0 0 0 0 0 0 0 0 0 0 0 21902 261 22852 115681;115682 116685 116685 1 LNTLETEEWFFK LTKKEGFIPSNYVAKLNTLETEEWFFKDIT VAKLNTLETEEWFFKDITRKDAERQLLAPG K L N F K D 0 0 1 0 0 0 3 0 0 0 2 1 0 2 0 0 2 1 0 0 0 0 12 0 1555.7559 P07948;E5RJ37 P07948 121 132 LYN Tyrosine-protein kinase Lyn yes no 2 0.0011423 56.563 By MS/MS By matching By matching 1 1 1 0.97498 0.99907 32.656 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97498 0.99907 NaN 1 0 Median 1.2994 1.1403 NaN 1 0 Median 0.63362 0.6134 NaN 1 0 Median NaN NaN NaN 0 0 Median 2176300 1047200 1129100 0 0 0 0 0 0 1666400 728830 937530 91614 43829 47786 418290 274530 143770 0 0 0 21903 1895 22853 115683;115684;115685 116686 116686 1 LNTLLQR MMVAGFKKQMADTGKLNTLLQRAPQCLGKF KQMADTGKLNTLLQRAPQCLGKFIEIAARK K L N Q R A 0 1 1 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 856.51305 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;A0A1W2PPE9 Q00839 552 558 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 3.9744E-11 181.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 5 4 4 6 1.2317 1.1001 12.232 26 Median 1.0603 1.0281 15.385 2 0 Median 1.289 1.0664 10.413 5 0 Median 1.0637 1.1333 11.005 5 0 Median 1.2782 1.0728 21.003 4 0 Median 1.1069 1.0929 11.427 4 0 Median 1.3284 1.0984 9.7927 6 1 Median 855010000 388310000 466700000 18997000 9928900 9067600 141740000 60825000 80915000 80892000 37955000 42937000 53481000 24104000 29378000 264730000 125370000 139360000 295170000 130130000 165040000 21904 2680 22854 115686;115687;115688;115689;115690;115691;115692;115693;115694;115695;115696;115697;115698;115699;115700;115701;115702;115703;115704;115705;115706;115707;115708;115709;115710;115711 116687;116688;116689;116690;116691;116692;116693;116694;116695;116696;116697;116698;116699;116700;116701;116702;116703;116704;116705;116706;116707;116708;116709;116710;116711;116712;116713;116714;116715;116716;116717;116718;116719 116711 33 LNTQEIFDDWAR EGQKLKQDGDSFRMKLNTQEIFDDWARKVQ RMKLNTQEIFDDWARKVQQRNLGVSGRIFT K L N A R K 1 1 1 2 0 1 1 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 12 0 1506.7103 Q14204 Q14204 693 704 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.8696E-05 156.48 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.0256 0.96367 46.609 8 Median 0.94897 0.9369 6.9218 2 0 Median 1.1483 0.9645 72.516 3 0 Plateau 0.94861 1.0413 11.078 2 0 Median 1.2592 1.0914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39812000 19314000 20498000 27255000 13364000 13891000 7110700 3298700 3812000 5324000 2596200 2727800 122400 55382 67021 0 0 0 0 0 0 21905 2865 22855 115712;115713;115714;115715;115716;115717;115718;115719 116720;116721;116722;116723;116724;116725;116726;116727;116728;116729;116730 116721 11 LNVAEVTQSEIAQK GQVLQKLFEKLESEKLNVAEVTQSEIAQKQ KLNVAEVTQSEIAQKQKLQTVLEKINETLK K L N Q K Q 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 14 0 1528.8097 Q9NVD7;E9PS97 Q9NVD7 141 154 PARVA Alpha-parvin yes no 2 2.1428E-07 113.47 By matching By MS/MS By MS/MS By matching 1 2 2 3 1.1738 1.0439 11.423 8 Median 0.91123 0.88401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.055 1.0102 12.907 2 0 Median 1.137 0.99176 11.057 2 0 Median NaN NaN NaN 0 0 Median 1.3707 1.1681 8.4732 3 0 Median 50553000 21857000 28696000 1863800 934900 928900 0 0 0 35546000 15124000 20423000 9325500 4063500 5262000 0 0 0 3817200 1734700 2082500 21906 4127 22856 115720;115721;115722;115723;115724;115725;115726;115727 116731;116732;116733;116734 116731 4 LNVCVSK RAITHLNNNFMFGQKLNVCVSKQPAIMPGQ NNFMFGQKLNVCVSKQPAIMPGQSYGLEDG K L N S K Q 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 7 0 818.43202 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0;B7WPG3;C9IYN3;D6W592;Q8WVV9;H7C464 P14866 449 455 HNRNPL;HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L;Heterogeneous nuclear ribonucleoprotein L-like no no 2 0.015495 71.342 By MS/MS By MS/MS 1 1 1.1436 1.0196 7.2877 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0144 0.96841 NaN 1 0 Median 1.2893 1.0735 NaN 1 0 Median 15232000 7108800 8122700 0 0 0 0 0 0 0 0 0 0 0 0 12882000 6107100 6775100 2349400 1001700 1347600 21907 2011;436;1419;629 22857 115728;115729 116735;116736;116737 116735 3 LNVDFALIHK PDAGGAKRVTSIADRLNVDFALIHKERKKA SIADRLNVDFALIHKERKKANEVDRMVLVG R L N H K E 1 0 1 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1168.6604 B1ALA9;P60891;A0A2R8Y7H4 B1ALA9 152 161 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.0070645 48.283 By MS/MS By matching 1 1 1.1607 1.0027 0.80908 2 Median 1.0956 0.997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2296 1.0085 NaN 1 0 Median 18699000 7921300 10778000 18558000 7857300 10700000 0 0 0 0 0 0 0 0 0 0 0 0 141750 63947 77802 21908 571 22858 115730;115731 116738;116739 116739 2 LNVFKNDQDTWDYTNPNLSGQGDPGSNPNKR SGCCTLKIEYAKPTRLNVFKNDQDTWDYTN NLSGQGDPGSNPNKRQRQPPLLGDHPAEYG R L N K R Q 0 1 6 4 0 2 0 3 0 0 2 2 0 1 3 2 2 1 1 1 0 0 31 2 3490.6138 A0A3B3ITJ4;M0QXS5;P14866 P14866 273 303 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 3;4 7.0576E-30 78.755 By matching By MS/MS By MS/MS 1 1 4 0.56559 0.66764 6.6342 6 Median 0.6906 0.74761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54366 0.66854 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56559 0.65668 5.6947 4 1 Median NaN NaN NaN 0 0 Median 116080000 71420000 44664000 2940700 1134100 1806500 0 0 0 11826000 7091900 4733600 0 0 0 101320000 63194000 38124000 0 0 0 21909 2011;436 22859 115732;115733;115734;115735;115736;115737 116740;116741;116742;116743;116744 116743 5 LNVGAPDVTLR GGDGVKVPGIDATTKLNVGAPDVTLRGPSL ATTKLNVGAPDVTLRGPSLQGDLAVSGDIK K L N L R G 1 1 1 1 0 0 0 1 0 0 2 0 0 0 1 0 1 0 0 2 0 0 11 0 1153.6455 Q09666 Q09666 5356 5366 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00013748 88.496 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 1 1 1.0883 1.0474 39.52 12 Median 1.1079 1.0718 18.716 3 0 Median 0.92391 0.73906 34.202 3 0 Median 1.5434 1.6462 59.491 2 0 Median 1.13 0.99156 8.5924 2 0 Median 0.54048 0.56579 NaN 1 0 Median 1.254 1.0413 NaN 1 0 Median 223130000 103350000 119780000 53055000 24974000 28081000 27858000 14048000 13810000 84055000 37520000 46536000 43174000 19861000 23313000 11321000 5441200 5880000 3666800 1509400 2157400 21910 2749 22860 115738;115739;115740;115741;115742;115743;115744;115745;115746;115747;115748;115749 116745;116746;116747;116748;116749;116750;116751;116752;116753;116754;116755;116756 116753 11 LNVLANVIR NGVDYVIMGMPHRGRLNVLANVIRKELEQI MPHRGRLNVLANVIRKELEQIFCQFDSKLE R L N I R K 1 1 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1010.6237 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 326 334 OGDH 2-oxoglutarate dehydrogenase, mitochondrial no no 2 0.0055515 57.281 By MS/MS By MS/MS By MS/MS 1 2 1 1.3035 1.2543 13.981 4 Median 1.0773 1.0417 NaN 1 0 Median 1.5866 1.3815 2.7521 2 0 Median 1.0838 1.1612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11221000 5048300 6172700 4194500 2236100 1958400 5386100 1991800 3394400 1640400 820400 819980 0 0 0 0 0 0 0 0 0 21911 912 22861 115750;115751;115752;115753 116757;116758;116759;116760;116761 116759 5 LNVTEQEK EHINKTIAPALVSKKLNVTEQEKIDKLMIE PALVSKKLNVTEQEKIDKLMIEMDGTENKS K L N E K I 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 959.49238 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 82 89 ENO1 Alpha-enolase;Enolase yes no 2 0.00093942 149.4 By MS/MS By MS/MS By MS/MS 2 2 1 1.3328 1.1817 22.159 5 Median 1.2462 1.1808 12.044 2 0 Median 1.3118 1.1191 7.6897 2 0 Median 1.8583 1.8304 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62855000 28192000 34664000 10179000 4793700 5385700 47436000 21666000 25770000 5240000 1731900 3508200 0 0 0 0 0 0 0 0 0 21912 1873 22862 115754;115755;115756;115757;115758 116762;116763;116764;116765;116766;116767;116768 116766 7 LNVTEQEKIDK EHINKTIAPALVSKKLNVTEQEKIDKLMIE VSKKLNVTEQEKIDKLMIEMDGTENKSKFG K L N D K L 0 0 1 1 0 1 2 0 0 1 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1315.6983 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 82 92 ENO1 Alpha-enolase;Enolase yes no 2;3 4.8435E-05 112.71 By MS/MS By MS/MS By MS/MS 2 2 2 1.1016 1.0386 28.594 6 Median 1.1068 1.0483 4.691 2 0 Median 0.91789 0.84297 27.586 2 0 Median NaN NaN NaN 0 0 Median 1.4102 1.3394 34.033 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123740000 58811000 64926000 90803000 46567000 44236000 15731000 7999100 7731700 0 0 0 17202000 4244900 12958000 0 0 0 0 0 0 21913 1873 22863 115759;115760;115761;115762;115763;115764 116769;116770;116771;116772;116773;116774;116775;116776;116777 116772 9 LNVTPLAR GAAALVLMTADAAKRLNVTPLARIVAFADA TADAAKRLNVTPLARIVAFADAAVEPIDFP R L N A R I 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 0 882.5287 P24752 P24752 304 311 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.0024458 120.49 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1.0903 1.0269 17.148 8 Median 1.0014 1.0001 15.272 3 0 Plateau 1.2296 1.0687 1.9164 2 0 Median 0.99641 1.0786 22.956 2 0 Median 1.2776 1.0907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85066000 42566000 42500000 24619000 12893000 11726000 14414000 6013600 8400400 40855000 21385000 19470000 5177200 2273800 2903400 0 0 0 0 0 0 21914 2126 22864 115765;115766;115767;115768;115769;115770;115771;115772 116778;116779;116780;116781;116782;116783 116780 6 LNVVAFLNELPK LKDPTLRFRLLKHTRLNVVAFLNELPKTQH HTRLNVVAFLNELPKTQHDVNSFVVDISAQ R L N P K T 1 0 2 0 0 0 1 0 0 0 3 1 0 1 1 0 0 0 0 2 0 0 12 0 1355.7813 Q9UBU9;E9PIN3 Q9UBU9 460 471 NXF1 Nuclear RNA export factor 1 yes no 2 0.0012313 83.862 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1.0817 0.98525 138.93 7 Median NaN NaN NaN 0 0 Median 44.148 36.563 NaN 1 1 Median 0.93266 0.98525 NaN 1 1 Median 1.7637 1.5317 88.726 2 0 Median 0.88481 0.90937 NaN 1 0 Median 1.1188 0.94172 8.6263 2 0 Median 100410000 5485400 94929000 0 0 0 93139000 1805900 91333000 4943200 2543700 2399500 607280 284390 322890 1458900 728990 729870 265680 122460 143220 21915 4249 22865 115773;115774;115775;115776;115777;115778;115779 116784;116785;116786 116784 3 LNVWDIGGQR TQGFNIKSVQSQGFKLNVWDIGGQRKIRPY SQGFKLNVWDIGGQRKIRPYWKNYFENTDI K L N Q R K 0 1 1 1 0 1 0 2 0 1 1 0 0 0 0 0 0 1 0 1 0 0 10 0 1156.5989 P36405 P36405 63 72 ARL3 ADP-ribosylation factor-like protein 3 yes yes 2 0.00035294 124.23 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.101 0.97765 5.7291 6 Median 0.97466 0.93148 4.2745 2 0 Median 1.2327 1.0362 1.9805 2 0 Median 0.97028 0.93053 NaN 1 0 Median 1.214 0.99556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56779000 27588000 29191000 43445000 21023000 22421000 7263900 3554300 3709600 5688400 2824400 2864000 382290 186160 196140 0 0 0 0 0 0 21916 2255 22866 115780;115781;115782;115783;115784;115785 116787;116788;116789;116790;116791;116792;116793;116794 116787 8 LNVWDIGGQRK TQGFNIKSVQSQGFKLNVWDIGGQRKIRPY QGFKLNVWDIGGQRKIRPYWKNYFENTDIL K L N R K I 0 1 1 1 0 1 0 2 0 1 1 1 0 0 0 0 0 1 0 1 0 0 11 1 1284.6939 P36405 P36405 63 73 ARL3 ADP-ribosylation factor-like protein 3 yes yes 3 0.016468 39.917 By MS/MS 2 0.84875 0.86667 28.057 2 Median 0.84875 0.86667 28.057 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7189300 3851300 3338100 7189300 3851300 3338100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21917 2255 22867 115786;115787 116795;116796 116796 2 LNVWDLSK PHNETILASSGTDRRLNVWDLSKIGEEQSA SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP R L N S K I 0 0 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 8 0 973.52328 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;Q16576;E9PC52;Q5JP02;Q5JNZ6 Q16576 341 348 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.015704 49.96 By matching By MS/MS By matching By MS/MS By matching 2 3 2 4 1 1.1051 1.1018 17.107 12 Median NaN NaN NaN 0 0 Median 1.109 0.94179 26.909 2 0 Median 1.0506 1.0861 5.9828 3 0 Median 1.3384 1.1835 0.41963 2 0 Median 1.0641 1.0637 24.168 4 0 Median 1.2688 1.0779 NaN 1 0 Median 61442000 30307000 31135000 0 0 0 3061300 1350500 1710900 36231000 18499000 17731000 4566500 1892700 2673800 16752000 8211700 8540100 831340 352630 478710 21918 2746;2990 22868 115788;115789;115790;115791;115792;115793;115794;115795;115796;115797;115798;115799 116797;116798;116799;116800 116798 4 LNYEENKEESLLEK AVKRLKEKLEAEMKKLNYEENKEESLLEKR KLNYEENKEESLLEKRRQLSRDIGRLKETY K L N E K R 0 0 2 0 0 0 5 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 1 1736.8469 O95347 O95347 468 481 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 7.4396E-08 160.84 By MS/MS By MS/MS 1 1 0.84181 0.8424 20.308 2 Median 0.69413 0.72972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0209 0.97249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19989000 9806500 10182000 5976400 3249800 2726600 0 0 0 0 0 0 14012000 6556700 7455800 0 0 0 0 0 0 21919 1766 22869 115800;115801 116801;116802 116802 2 LNYGIPAIVK TSRHPEAEMAQNSVRLNYGIPAIVKLLNQP QNSVRLNYGIPAIVKLLNQPNQWPLVKATI R L N V K L 1 0 1 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1086.6437 P14923 P14923 478 487 JUP Junction plakoglobin yes yes 2 0.039386 45.68 By MS/MS 1 0.18914 0.19984 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18914 0.19984 NaN 1 1 Median NaN NaN NaN 0 0 Median 1666800 1411100 255730 0 0 0 0 0 0 0 0 0 0 0 0 1666800 1411100 255730 0 0 0 21920 2013 22870 115802 116803 116803 1 LNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK QIALGTSKLNYLDPRITVAWCKKWGVPIEK K L N P R I 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 889.46577 P11387;Q969P6;H0YAR3 P11387 721 727 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0062109 94.006 By MS/MS By MS/MS By matching 2 4 1 1.0578 0.93381 12.015 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91529 0.94879 5.1426 2 0 Median 1.1173 0.95537 16.071 4 0 Median NaN NaN NaN 0 0 Median 1.1484 0.93381 NaN 1 0 Median 75980000 38904000 37076000 0 0 0 0 0 0 56994000 30024000 26970000 16734000 7851700 8881900 0 0 0 2252300 1027500 1224700 21921 1962 22871 115803;115804;115805;115806;115807;115808;115809 116804;116805;116806;116807;116808;116809;116810;116811;116812;116813;116814 116807 11 LNYSDHDVIK PSGLKVRYLKVFEPKLNYSDHDVIKWVRYI VFEPKLNYSDHDVIKWVRYIGRSGIYETRC K L N I K W 0 0 1 2 0 0 0 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1202.5932 A0A087WY71;E9PFW3;Q96CW1 A0A087WY71 410 419 AP2M1 AP-2 complex subunit mu yes no 2;3 0.00067462 72.325 By matching By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1.0693 1.0264 25.312 11 Median 1.0589 1.0289 39.416 4 0 Median 1.0693 0.92121 20.93 3 1 Median 1.0042 0.98989 5.1239 2 0 Median 1.4492 1.3014 NaN 1 0 Median 1.0863 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median 36691000 16795000 19896000 11490000 5869000 5621100 6601000 2877200 3723800 9512300 4716100 4796100 7677000 2795300 4881600 1410700 537210 873500 0 0 0 21922 78 22872 115810;115811;115812;115813;115814;115815;115816;115817;115818;115819;115820 116815;116816;116817;116818;116819;116820 116816 6 LNYVPLEKQEEER AKTIAEQLAEKINAKLNYVPLEKQEEERQD AKLNYVPLEKQEEERQDGGQNESFKRYEEE K L N E R Q 0 1 1 0 0 1 4 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 13 1 1645.8312 Q7L014;A0A0C4DG89 Q7L014 908 920 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.00019102 69.716 By MS/MS 1 0.93441 1.0589 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93441 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9433400 5343600 4089900 0 0 0 0 0 0 9433400 5343600 4089900 0 0 0 0 0 0 0 0 0 21923 3216 22873 115821 116821 116821 1 LNYVPLEKQEEERQDGGQNESFK AKTIAEQLAEKINAKLNYVPLEKQEEERQD QEEERQDGGQNESFKRYEEELEINDFPQTA K L N F K R 0 1 2 1 0 3 5 2 0 0 2 2 0 1 1 1 0 0 1 1 0 0 23 2 2736.2991 Q7L014;A0A0C4DG89 Q7L014 908 930 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 8.434E-08 45.784 By matching By MS/MS 1 1 0.71656 0.81549 13.274 2 Median 0.65317 0.74242 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7861 0.89574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15230000 8507000 6722600 2187600 1337400 850220 0 0 0 13042000 7169600 5872400 0 0 0 0 0 0 0 0 0 21924 3216 22874 115822;115823 116822;116823 116822 2 LPAAGVGDMVMATVK LYIISVKGIKGRLNRLPAAGVGDMVMATVK LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L P V K K 3 0 0 1 0 0 0 2 0 0 1 1 2 0 1 0 1 0 0 3 0 0 15 0 1458.7575 P62829;C9JD32;J3KT29;B9ZVP7 P62829 52 66 RPL23 60S ribosomal protein L23 yes no 2;3 4.6488E-10 162.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 8 8 6 4 4 4 0.99826 0.9163 36.563 34 Median 0.95752 0.89771 12.332 8 0 Median 0.9938 0.83768 69.409 8 0 Median 0.97426 0.91922 3.7176 6 2 Median 1.1179 0.91546 7.9977 4 0 Median 1.0496 1.1687 14.986 4 0 Median 1.1426 0.93368 6.9211 4 0 Median 721780000 354530000 367260000 358020000 177090000 180930000 98855000 49343000 49513000 204990000 99589000 105400000 5270200 2465400 2804800 41025000 18896000 22129000 13616000 7147000 6468800 21925 2598 22875;22876;22877 115824;115825;115826;115827;115828;115829;115830;115831;115832;115833;115834;115835;115836;115837;115838;115839;115840;115841;115842;115843;115844;115845;115846;115847;115848;115849;115850;115851;115852;115853;115854;115855;115856;115857 116824;116825;116826;116827;116828;116829;116830;116831;116832;116833;116834;116835;116836;116837;116838;116839;116840;116841;116842;116843;116844;116845;116846;116847;116848;116849;116850;116851;116852;116853;116854;116855;116856 116844 1265;1266 33 LPAAGVGDMVMATVKK LYIISVKGIKGRLNRLPAAGVGDMVMATVK PAAGVGDMVMATVKKGKPELRKKVHPAVVI R L P K K G 3 0 0 1 0 0 0 2 0 0 1 2 2 0 1 0 1 0 0 3 0 0 16 1 1586.8524 P62829;C9JD32;J3KT29;B9ZVP7 P62829 52 67 RPL23 60S ribosomal protein L23 yes no 2;3 3.1483E-05 57.788 By MS/MS By MS/MS By MS/MS 2 4 1 0.98151 0.92039 12.198 7 Median 1.0004 0.99556 3.2177 2 0 Median 0.95884 0.83997 9.3314 4 0 Median 1.0093 1.0231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76089000 37922000 38167000 61197000 30855000 30342000 6038500 2908700 3129800 8854200 4158300 4696000 0 0 0 0 0 0 0 0 0 21926 2598 22878 115858;115859;115860;115861;115862;115863;115864 116857;116858;116859;116860;116861;116862;116863 116862 7 LPAEEKAPVSYPNTLPESFTK MSFLVDDYTFNVDQKLPAEEKAPVSYPNTL APVSYPNTLPESFTKFLQEQRMACEVGLYY K L P T K F 2 0 1 0 0 0 3 0 0 0 2 2 0 1 4 2 2 0 1 1 0 0 21 1 2317.1842 Q8WX92 Q8WX92 393 413 NELFB Negative elongation factor B yes yes 3 0.010791 21.006 By MS/MS 1 0.51512 0.48667 NaN 1 Median 0.51512 0.48667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4723400 2931600 1791800 4723400 2931600 1791800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21927 3514 22879 115865 116864;116865 116865 2 LPAELQELPGLSHQYWSAPSDK PDILCLQETKCSENKLPAELQELPGLSHQY LPGLSHQYWSAPSDKEGYSGVGLLSRQCPL K L P D K E 2 0 0 1 0 2 2 1 1 0 4 1 0 0 3 3 0 1 1 0 0 0 22 0 2465.2227 G3V3M6;P27695;G3V5Q1;G3V3C7;A0A0C4DGK8;G3V5M0;G3V359;H7C4A8 G3V3M6 104 125 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3 1.155E-09 58.366 By matching By MS/MS By matching By matching 1 1 2 1 0.78632 0.66394 26.995 5 Median NaN NaN NaN 0 0 Median 1.2423 1.0586 NaN 1 0 Median 0.60851 0.58574 NaN 1 0 Median 0.88845 0.74742 16.751 2 0 Median NaN NaN NaN 0 0 Median 0.67567 0.55311 NaN 1 0 Median 16386000 9369000 7017000 0 0 0 1094600 385770 708810 13229000 7843000 5385900 1754000 956220 797810 0 0 0 308500 184030 124470 21928 1112 22880 115866;115867;115868;115869;115870 116866;116867 116867 2 LPAGAEPYEFVSLEWLQK KGKAKHEEVKELYQRLPAGAEPYEFVSLEW GAEPYEFVSLEWLQKWLDESTPTKPIDNHA R L P Q K W 2 0 0 0 0 1 3 1 0 0 3 1 0 1 2 1 0 1 1 1 0 0 18 0 2076.0568 Q86UV5;E9PJH5;E9PJ93 Q86UV5 479 496 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 3 0.021274 16.306 By MS/MS 1 0.64471 0.68721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64471 0.68721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 744440 338570 405870 0 0 0 0 0 0 744440 338570 405870 0 0 0 0 0 0 0 0 0 21929 3281 22881 115871 116868 116868 1 LPAGPANRPPEPHTQVQR SQEAKGTQTGVEQPRLPAGPANRPPEPHTQ GPANRPPEPHTQVQRAQAETGPTSFPSPVS R L P Q R A 2 2 1 0 0 2 1 1 1 0 1 0 0 0 5 0 1 0 0 1 0 0 18 1 1964.034 Q96T58 Q96T58 3404 3421 SPEN Msx2-interacting protein yes yes 3;4 9.2038E-05 41.412 By MS/MS By MS/MS By matching 3 5 1 0.51581 0.47932 22.819 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42241 0.46423 33.579 3 0 Median 0.52931 0.47932 17.248 5 0 Median 0.53644 0.63215 NaN 1 0 Median NaN NaN NaN 0 0 Median 19138000 12558000 6579800 0 0 0 0 0 0 11703000 7964600 3738300 6264500 3908700 2355800 1170400 684620 485770 0 0 0 21930 3741 22882 115872;115873;115874;115875;115876;115877;115878;115879;115880 116869;116870;116871;116872;116873;116874 116871 6 LPAIALDLLR NVLKMAASSVKKDRKLPAIALDLLRLALKE KKDRKLPAIALDLLRLALKEDKFPRFWKEV K L P L R L 2 1 0 1 0 0 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 10 0 1093.6859 Q9BQG0;I3L1L3 Q9BQG0 264 273 MYBBP1A Myb-binding protein 1A yes no 2 0.0026987 59.35 By matching By matching By MS/MS By matching By matching By matching 1 3 2 1 2 3 0.94352 0.85494 27.116 12 Median 1.4887 1.4659 NaN 1 0 Median 0.98297 0.86603 33.719 3 0 Median 0.7009 0.74216 46.957 2 0 Median 0.93699 0.81294 NaN 1 0 Median 0.90246 0.94974 1.8022 2 0 Median 0.95442 0.83896 1.3961 3 0 Median 6377600 3130400 3247100 247980 86337 161640 836610 370440 466170 2102300 1093800 1008500 107440 51349 56095 2389700 1183100 1206700 693470 345410 348060 21931 3789 22883 115881;115882;115883;115884;115885;115886;115887;115888;115889;115890;115891;115892 116875;116876 116875 2 LPAKDIQTNVYIK LSQNRVAEFHTELERLPAKDIQTNVYIKHP ERLPAKDIQTNVYIKHPVSLEQYLMEGSYN R L P I K H 1 0 1 1 0 1 0 0 0 2 1 2 0 0 1 0 1 0 1 1 0 0 13 1 1501.8504 R4GMR5;P48556;K7EJR3;K7EJC1;K7ERW6 R4GMR5 152 164 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2;3 0.00038175 57.804 By MS/MS 2 0.88027 0.8557 4.4853 2 Median 0.88027 0.8557 4.4853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23747000 12857000 10890000 23747000 12857000 10890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21932 2362 22884 115893;115894 116877;116878;116879 116878 3 LPANHPLLTGQR VQVWPVRQVRPVTEKLPANHPLLTGQRVLD TEKLPANHPLLTGQRVLDALFPCVQGGTTA K L P Q R V 1 1 1 0 0 1 0 1 1 0 3 0 0 0 2 0 1 0 0 0 0 0 12 0 1315.7361 P38606 P38606 221 232 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2;3 1.1706E-06 150.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 0.91587 0.88793 33.989 9 Median 0.83811 0.81363 14.181 3 0 Median 0.95803 0.82747 6.2888 2 0 Median 0.88891 0.91161 3.7223 2 0 Median 1.077 0.89917 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6841 2.252 NaN 1 0 Median 125860000 64199000 61664000 46540000 23990000 22550000 60197000 30554000 29644000 16815000 8687300 8127900 1477800 761550 716270 0 0 0 832590 205600 626990 21933 2276 22885 115895;115896;115897;115898;115899;115900;115901;115902;115903 116880;116881;116882;116883;116884;116885;116886;116887;116888;116889;116890;116891;116892 116887 13 LPANLLYK VCDVLPLIINNHDVRLPANLLYKYLNKAAE INNHDVRLPANLLYKYLNKAAEFYINYVTR R L P Y K Y 1 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 8 0 930.55385 Q9NVR2 Q9NVR2 190 197 INTS10 Integrator complex subunit 10 yes yes 2 0.0083349 63.301 By matching By MS/MS By matching 1 1 1 1.0502 0.93748 3.8447 3 Median NaN NaN NaN 0 0 Median 1.1043 0.99686 NaN 1 0 Median 0.89621 0.93748 NaN 1 0 Median 1.0502 0.92875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6295500 3261500 3034000 0 0 0 209590 112770 96821 5792500 2987800 2804600 293460 160860 132590 0 0 0 0 0 0 21934 4139 22886 115904;115905;115906 116893 116893 1 LPASHATWMGK VIDVDTGKSTLFVPRLPASHATWMGKIHSK FVPRLPASHATWMGKIHSKEHFKEKYAVDD R L P G K I 2 0 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 1 0 0 0 0 11 0 1197.5965 A0A494C194;K7ES25;A0A494C165;P12955;V9GYL0 A0A494C194 100 110 PEPD Xaa-Pro dipeptidase yes no 3 0.0026229 38.783 By MS/MS By MS/MS 1 1 1.1604 1.055 2.4963 2 Median 1.0812 1.0365 NaN 1 0 Median 1.2454 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4535400 2134000 2401400 2878200 1375000 1503200 1657200 758960 898240 0 0 0 0 0 0 0 0 0 0 0 0 21935 465 22887 115907;115908 116894;116895;116896;116897 116896 4 LPATEKPVLLSK ETWAWKNATLAEQAKLPATEKPVLLSKDIE QAKLPATEKPVLLSKDIEAKMMALDREVQY K L P S K D 1 0 0 0 0 0 1 0 0 0 3 2 0 0 2 1 1 0 0 1 0 0 12 1 1294.786 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 816 827 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 3.4938E-05 120.77 By MS/MS By MS/MS By matching 2 2 1 0.90046 0.83738 6.3633 5 Median 0.83856 0.87712 9.9155 2 0 Median 0.9398 0.86539 4.6523 2 1 Median NaN NaN NaN 0 0 Median 0.85203 0.81162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105760000 54281000 51481000 29504000 15796000 13708000 74647000 37649000 36999000 0 0 0 1611800 837070 774700 0 0 0 0 0 0 21936 101 22888 115909;115910;115911;115912;115913 116898;116899;116900;116901;116902 116898 5 LPAVSSVACGASVGYAVTK GEGAEEKSIPTLISRLPAVSSVACGASVGY SSVACGASVGYAVTKDGRVFAWGMGTNYQL R L P T K D 4 0 0 0 1 0 0 2 0 0 1 1 0 0 1 3 1 0 1 4 0 0 19 0 1835.9451 P18754 P18754 344 362 RCC1 Regulator of chromosome condensation yes yes 2 9.4828E-08 76.588 By MS/MS By MS/MS 1 1 0.986 0.94825 1.5036 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96641 0.93822 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.006 0.95839 NaN 1 0 Median NaN NaN NaN 0 0 Median 16109000 7943700 8165100 0 0 0 0 0 0 9413300 4645600 4767600 0 0 0 6695500 3298100 3397500 0 0 0 21937 2061 22889 115914;115915 116903;116904;116905;116906 116906 4 LPAVVTADLR VEREIDGGLETLRLKLPAVVTADLRLNEPR TLRLKLPAVVTADLRLNEPRYATLPNIMKA K L P L R L 2 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 10 0 1053.6182 P38117;M0QY67 P38117 177 186 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.00033468 86.136 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.0342 0.91659 21.462 4 Median 0.77022 0.73161 NaN 1 0 Median 1.3493 1.1422 NaN 1 0 Median 0.82954 0.79716 NaN 1 0 Median 1.2894 1.0539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32690000 16947000 15743000 21113000 10918000 10194000 3260200 1484000 1776200 7830800 4333000 3497900 485940 211110 274830 0 0 0 0 0 0 21938 2272 22890 115916;115917;115918;115919;115920 116907;116908;116909;116910;116911 116908 5 LPAVVTADLRLNEPR VEREIDGGLETLRLKLPAVVTADLRLNEPR LPAVVTADLRLNEPRYATLPNIMKAKKKKI K L P P R Y 2 2 1 1 0 0 1 0 0 0 3 0 0 0 2 0 1 0 0 2 0 0 15 1 1662.9417 P38117;M0QY67 P38117 177 191 ETFB Electron transfer flavoprotein subunit beta yes no 3 0.054901 12.833 By matching By MS/MS 1 2 1.1097 0.94246 10.94 3 Median 0.72949 0.77977 NaN 1 0 Median 1.1097 0.94246 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34431000 19310000 15120000 24656000 14812000 9844600 9774300 4498600 5275700 0 0 0 0 0 0 0 0 0 0 0 0 21939 2272 22891 115921;115922;115923 116912 116912 1 LPAYLTIQMVR LQRNALYIKSSKISRLPAYLTIQMVRFFYK KISRLPAYLTIQMVRFFYKEKESVNAKVLK R L P V R F 1 1 0 0 0 1 0 0 0 1 2 0 1 0 1 0 1 0 1 1 0 0 11 0 1303.7322 A6NJA2;P54578 A6NJA2 274 284 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.001927 78.934 By MS/MS By MS/MS 2 3 1.1027 0.99738 7.0086 4 Median 0.99164 0.95996 1.6996 2 0 Median 1.2458 1.0666 5.7853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27850000 13625000 14225000 16968000 8737400 8230200 10883000 4888000 5994600 0 0 0 0 0 0 0 0 0 0 0 0 21940 523 22892 115924;115925;115926;115927;115928 116913;116914;116915;116916 116916 4 LPCEMDAQGPK VKKYKSEALGVGDVKLPCEMDAQGPKQMNI GDVKLPCEMDAQGPKQMNIPGGDRSTPAAV K L P P K Q 1 0 0 1 1 1 1 1 0 0 1 1 1 0 2 0 0 0 0 0 0 0 11 0 1244.5529 Q9UGI8 Q9UGI8 194 204 TES Testin yes yes 2 0.00054228 67.563 By MS/MS 1 0.85201 0.73352 NaN 1 Median NaN NaN NaN 0 0 Median 0.85201 0.73352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1801800 879740 922060 0 0 0 1801800 879740 922060 0 0 0 0 0 0 0 0 0 0 0 0 21941 4263 22893 115929 116917;116918 116917 2 LPCNHIFHTSCLR VCIICREEMVTGAKRLPCNHIFHTSCLRSW KRLPCNHIFHTSCLRSWFQRQQTCPTCRMD R L P L R S 0 1 1 0 2 0 0 0 2 1 2 0 0 1 1 1 1 0 0 0 0 0 13 0 1653.7868 Q86TM6 Q86TM6 305 317 SYVN1 E3 ubiquitin-protein ligase synoviolin yes yes 3 2.3657E-05 85.457 By MS/MS 1 1.8669 1.4938 NaN 1 Median NaN NaN NaN 0 0 Median 1.8669 1.4938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21967000 6049000 15918000 0 0 0 21967000 6049000 15918000 0 0 0 0 0 0 0 0 0 0 0 0 21942 3268 22894 115930 116919 116919 1 LPDDQIPK SFAGNLNTYKRLAIKLPDDQIPKTNCNVAV YKRLAIKLPDDQIPKTNCNVAVINVGAPAA K L P P K T 0 0 0 2 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 0 924.49165 Q01813;B1APP6 Q01813 401 408 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.036942 37.53 By MS/MS 1 0.83182 0.72667 NaN 1 Median NaN NaN NaN 0 0 Median 0.83182 0.72667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7543700 4159300 3384400 0 0 0 7543700 4159300 3384400 0 0 0 0 0 0 0 0 0 0 0 0 21943 2692 22895 115931 116920 116920 1 LPDFLTAK YVECLLYSFHQLGRKLPDFLTAKLNAEKLK FHQLGRKLPDFLTAKLNAEKLKDFKIRLQY K L P A K L 1 0 0 1 0 0 0 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 8 0 903.50657 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 357 364 API5 Apoptosis inhibitor 5 yes no 2 0.02889 40.067 By MS/MS 1 0.82976 0.84626 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82976 0.84626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3451100 1681900 1769200 0 0 0 0 0 0 3451100 1681900 1769200 0 0 0 0 0 0 0 0 0 21944 1103 22896 115932 116921;116922 116922 2 LPDGSEIPLPPILLGR QLGGSVELVDIGKQKLPDGSEIPLPPILLG PDGSEIPLPPILLGRLGSDPQKKTVCIYGH K L P G R L 0 1 0 1 0 0 1 2 0 2 4 0 0 0 4 1 0 0 0 0 0 0 16 0 1685.9716 Q96KP4;J3QKT2;J3QQN6;J3QR27;J3QLU1;J3QKQ0;J3QRD0;J3QL02;J3KSV5;A0A087WYZ1;J3KRD5;A0A087WVS2 Q96KP4 69 84 CNDP2 Cytosolic non-specific dipeptidase yes no 2 0.0043619 34.378 By MS/MS 1 0.53578 0.46597 NaN 1 Median NaN NaN NaN 0 0 Median 0.53578 0.46597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1428900 903660 525220 0 0 0 1428900 903660 525220 0 0 0 0 0 0 0 0 0 0 0 0 21945 3696 22897 115933 116923 116923 1 LPDGSSFTNQFPSDAPLEEAR SYARERSTVARIQFRLPDGSSFTNQFPSDA FTNQFPSDAPLEEARQFAAQTVGNTYGNFS R L P A R Q 2 1 1 2 0 1 2 1 0 0 2 0 0 2 3 3 1 0 0 0 0 0 21 0 2277.055 Q92575 Q92575 326 346 UBXN4 UBX domain-containing protein 4 yes yes 2 1.4593E-08 57.159 By MS/MS 1 0.62504 0.65065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62504 0.65065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3688500 2242500 1446000 0 0 0 0 0 0 3688500 2242500 1446000 0 0 0 0 0 0 0 0 0 21946 3538 22898 115934 116924 116924 1 LPDGTSLTQTFR PPTKREYDQCRIQVRLPDGTSLTQTFRARE QVRLPDGTSLTQTFRAREQLAAVRLYVELH R L P F R A 0 1 0 1 0 1 0 1 0 0 2 0 0 1 1 1 3 0 0 0 0 0 12 0 1334.683 E9PJ81;E9PRQ7;Q04323;A0A087WTZ5 E9PJ81 220 231 UBXN1 UBX domain-containing protein 1 yes no 2 3.1534E-06 123.42 By MS/MS By matching By MS/MS 2 2 2 1.0594 1.0244 10.879 6 Median 1.0519 1.0192 12.498 2 1 Median 1.2718 1.0615 14.76 2 0 Median 0.96426 0.99842 13.373 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85515000 41825000 43690000 70548000 34115000 36433000 3575600 1638000 1937600 11391000 6072100 5319300 0 0 0 0 0 0 0 0 0 21947 942 22899 115935;115936;115937;115938;115939;115940 116925;116926;116927;116928;116929;116930 116925 6 LPDGYEFK AEVCITFDQANLTVKLPDGYEFKFPNRLNL QANLTVKLPDGYEFKFPNRLNLEAINYMAA K L P F K F 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 8 0 967.4651 P09382 P09382 101 108 LGALS1 Galectin-1 yes yes 2 0.020962 51.736 By MS/MS By MS/MS By matching 1 1 1 1.0085 0.82337 12.286 3 Median 0.73881 0.67431 NaN 1 1 Median 1.0248 0.84346 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0085 0.82337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21330000 10544000 10785000 7030200 3864500 3165700 13457000 6311500 7145500 0 0 0 842520 368460 474060 0 0 0 0 0 0 21948 1913 22900 115941;115942;115943 116931;116932 116932 2 LPDGYEFKFPNR AEVCITFDQANLTVKLPDGYEFKFPNRLNL TVKLPDGYEFKFPNRLNLEAINYMAADGDF K L P N R L 0 1 1 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 1 0 0 0 12 1 1481.7303 P09382 P09382 101 112 LGALS1 Galectin-1 yes yes 3 0.071375 22.578 By MS/MS 1 0.50655 0.49672 NaN 1 Median 0.50655 0.49672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4280400 2723100 1557300 4280400 2723100 1557300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21949 1913 22901 115944 116933 116933 1 LPDLKDAEAVQK RKKQKLAKERAGLSKLPDLKDAEAVQKFFL LSKLPDLKDAEAVQKFFLEEIQLGEELLAQ K L P Q K F 2 0 0 2 0 1 1 0 0 0 2 2 0 0 1 0 0 0 0 1 0 0 12 1 1325.7191 Q15388 Q15388 57 68 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 2;3 1.1973E-06 152.54 By matching By MS/MS By MS/MS 2 2 2 0.91008 0.91602 86.64 5 Median 1.0099 0.9457 3.2763 2 0 Median 0.13473 0.13382 NaN 1 0 Median 0.90307 0.9106 0.83937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48516000 25310000 23206000 7139100 3635700 3503400 2476800 2254600 222190 38900000 19420000 19480000 0 0 0 0 0 0 0 0 0 21950 2945 22902 115945;115946;115947;115948;115949;115950 116934;116935;116936;116937;116938;116939 116936 6 LPDNYTQDTWR GSKKLVIKNFRDRPRLPDNYTQDTWRKLHE DRPRLPDNYTQDTWRKLHEAVRAVQSSTSI R L P W R K 0 1 1 2 0 1 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 11 0 1407.6419 Q13619;A0A087WWN2 Q13619 54 64 CUL4A Cullin-4A yes no 2 0.00015814 87.913 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21951 2832 22903 115951 116940 116940 1 LPDVYGVFQFK TFLKKKGGKYSVQFKLPDVYGVFQFKVDYN VQFKLPDVYGVFQFKVDYNRLGYTHLYSST K L P F K V 0 0 0 1 0 1 0 1 0 0 1 1 0 2 1 0 0 0 1 2 0 0 11 0 1311.6863 P39656;A0A0C4DGS1 P39656 381 391 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 0.00014953 91.069 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.0518 0.9066 9.4726 6 Median 0.8918 0.82433 NaN 1 0 Median 1.0279 0.87618 NaN 1 1 Median 0.98909 1.0334 NaN 1 0 Median 1.0841 0.91615 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1725 0.96937 10.949 2 0 Median 34498000 17667000 16832000 15635000 7606500 8028600 9078000 4469700 4608300 7188100 3642400 3545800 2075400 1718900 356530 0 0 0 521650 229210 292440 21952 253 22904 115952;115953;115954;115955;115956;115957 116941;116942;116943;116944 116942 4 LPDYKPYPMYPATTSLVNVVPK LLGTPTEEQWPSMTKLPDYKPYPMYPATTS PMYPATTSLVNVVPKLNATGRDLLQNLLKC K L P P K L 1 0 1 1 0 0 0 0 0 0 2 2 1 0 5 1 2 0 3 3 0 0 22 1 2492.3025 Q00535 Q00535 233 254 CDK5 Cyclin-dependent-like kinase 5 yes yes 3 5.7088E-07 44.341 By MS/MS By matching By matching 1 1 1 0.32309 0.291 19.576 3 Median 0.41652 0.40456 NaN 1 0 Median 0.32309 0.291 NaN 1 0 Median 0.27127 0.28568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15643000 10567000 5075600 14166000 9440000 4725800 476760 392520 84236 1000500 734870 265600 0 0 0 0 0 0 0 0 0 21953 2675 22905 115958;115959;115960 116945;116946 116946 2 LPDYSSIEIMR DDFLPSVMTCVNYLKLPDYSSIEIMREKLL NYLKLPDYSSIEIMREKLLIAAREGQQSFH K L P M R E 0 1 0 1 0 0 1 0 0 2 1 0 1 0 1 2 0 0 1 0 0 0 11 0 1322.654 Q14669 Q14669 1965 1975 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.00019593 75.294 By matching By MS/MS By MS/MS 1 3 1 0.97914 1.0013 24.589 5 Median NaN NaN NaN 0 0 Median 1.0256 0.91076 NaN 1 0 Median 1.005 1.1092 34.155 3 0 Plateau NaN NaN NaN 0 0 Median 0.95794 1.0013 NaN 1 1 Median NaN NaN NaN 0 0 Median 12022000 5682500 6340000 0 0 0 293610 112310 181300 10418000 4896500 5521400 0 0 0 1311000 673630 637330 0 0 0 21954 2886 22906;22907 115961;115962;115963;115964;115965 116947;116948;116949 116948 1574 3 LPEAAFLAR GKVDACLELLIRTGRLPEAAFLARTYLPSQ LIRTGRLPEAAFLARTYLPSQVSRVVKLWR R L P A R T 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 9 0 986.55492 P35606 P35606 751 759 COPB2 Coatomer subunit beta yes yes 2 0.0005329 116.9 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0542 0.9686 38.911 7 Median 1.0542 1.041 13.115 3 0 Median 0.74798 0.65989 16.769 2 0 Median 1.8976 2.0237 NaN 1 0 Median 1.1364 0.9686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67162000 31557000 35605000 44664000 20741000 23923000 15642000 7823300 7819100 5612200 2363900 3248300 1243300 628670 614660 0 0 0 0 0 0 21955 2246 22908 115966;115967;115968;115969;115970;115971;115972 116950;116951;116952;116953 116950 4 LPEASQSPLVLK LPINSAAIKAECTARLPEASQSPLVLKQAV TARLPEASQSPLVLKQAVRKPLEAVLRYLE R L P L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 1 0 0 12 0 1280.734 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 516 527 MTA1 Metastasis-associated protein MTA1 yes no 2 1.721E-05 97.472 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 0.86277 0.81173 18.387 6 Median NaN NaN NaN 0 0 Median 1.0789 0.97409 NaN 1 0 Median 0.63962 0.63612 NaN 1 0 Median 0.98966 0.85782 NaN 1 0 Median 0.69953 0.69029 15.109 2 0 Median 1.0686 0.88639 NaN 1 0 Median 50013000 28428000 21585000 0 0 0 671120 308510 362610 28689000 16608000 12081000 3559800 1868300 1691600 15954000 9098700 6855300 1138900 544410 594530 21956 888 22909 115973;115974;115975;115976;115977;115978 116954;116955;116956 116954 3 LPEDPLLSGLLDSPALK LQLELAQVLAQERPKLPEDPLLSGLLDSPA EDPLLSGLLDSPALKACLDTAVENMPSLKM K L P L K A 1 0 0 2 0 0 1 1 0 0 6 1 0 0 3 2 0 0 0 0 0 0 17 0 1776.9873 P49327;A0A0U1RQF0 P49327 1209 1225 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 3.8092E-48 185.59 By MS/MS By MS/MS By MS/MS By matching By matching 3 7 1 1 3 0.87191 0.78728 18.263 15 Median 0.64133 0.61673 1.0752 3 1 Plateau 0.91794 0.79232 7.102 7 0 Median 0.67803 0.75412 NaN 1 0 Median 0.86174 0.78049 NaN 1 0 Median 0.99463 0.9826 18.316 3 0 Median NaN NaN NaN 0 0 Median 148340000 78973000 69368000 45723000 26657000 19065000 99793000 50825000 48967000 1980000 1134100 845910 91587 45169 46418 754340 311530 442810 0 0 0 21957 2377 22910 115979;115980;115981;115982;115983;115984;115985;115986;115987;115988;115989;115990;115991;115992;115993 116957;116958;116959;116960;116961;116962;116963;116964;116965;116966;116967;116968 116959 12 LPEDQAVINR TPKPQEGNPRPRVFRLPEDQAVINRYGFNS PRVFRLPEDQAVINRYGFNSHGLSVVEHRL R L P N R Y 1 1 1 1 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 10 0 1153.6091 Q02127;I3NI32;J3QRQ3;I3L449 Q02127 136 145 DHODH Dihydroorotate dehydrogenase (quinone), mitochondrial yes no 2 0.023211 51.066 By MS/MS 1 1.0605 0.90378 NaN 1 Median NaN NaN NaN 0 0 Median 1.0605 0.90378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1614100 698160 915940 0 0 0 1614100 698160 915940 0 0 0 0 0 0 0 0 0 0 0 0 21958 2696 22911 115994 116969 116969 1 LPEELGR DAKEIFGRIQDKHKKLPEELGRDQNTVETL RIQDKHKKLPEELGRDQNTVETLQRMHTTF K L P G R D 0 1 0 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 812.43922 Q01082;A0A087WUZ3 Q01082 1828 1834 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.026054 53.554 By MS/MS 1 0.87153 0.96275 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87153 0.96275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4298800 2377900 1920800 0 0 0 0 0 0 4298800 2377900 1920800 0 0 0 0 0 0 0 0 0 21959 2681 22912 115995 116970 116970 1 LPEELGRDQNTVETLQR DAKEIFGRIQDKHKKLPEELGRDQNTVETL EELGRDQNTVETLQRMHTTFEHDIQALGTQ K L P Q R M 0 2 1 1 0 2 3 1 0 0 3 0 0 0 1 0 2 0 0 1 0 0 17 1 1997.0178 Q01082;A0A087WUZ3 Q01082 1828 1844 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 8.398E-15 157.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 0.82953 0.80787 41.602 7 Median 1.0582 1.1317 NaN 1 0 Median 0.70574 0.66146 NaN 1 1 Median 0.68142 0.86079 NaN 1 0 Median 0.82953 0.75119 NaN 1 0 Median 0.74681 0.80787 NaN 1 1 Median 1.4789 1.2487 79.924 2 0 Median 108460000 58777000 49680000 18755000 8997300 9757400 6945300 3736100 3209300 74761000 41956000 32805000 1401000 737220 663770 5301500 2863500 2437900 1293500 486500 806970 21960 2681 22913 115996;115997;115998;115999;116000;116001;116002 116971;116972;116973;116974;116975;116976;116977 116973 6 LPEEPITR FFKNLGVVVAPHTLKLPEEPITRWGEYWCE VAPHTLKLPEEPITRWGEYWCEVTVNGLDT K L P T R W 0 1 0 0 0 0 2 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 8 0 953.5182 Q9BYD2;Q5SZR1 Q9BYD2 208 215 MRPL9 39S ribosomal protein L9, mitochondrial yes no 2 0.0035442 89.752 By MS/MS By MS/MS By matching 1 1 1 1.0847 1.0273 20.785 3 Median 1.0847 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4418 1.3851 NaN 1 1 Median 0.96641 0.92873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24501000 9867700 14633000 8277500 4139500 4138000 0 0 0 15677000 5508300 10169000 546180 219860 326320 0 0 0 0 0 0 21961 3889 22914 116003;116004;116005 116978;116979;116980 116979 3 LPEGDLGK LSLLQDSGEVREDLRLPEGDLGKEIEQKYD EVREDLRLPEGDLGKEIEQKYDCGEEILIT R L P G K E 0 0 0 1 0 0 1 2 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 0 827.43888 I3L397;I3L504;P63241;Q6IS14 I3L397 114 121 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 2 0.0046696 80.229 By MS/MS By MS/MS By MS/MS 1 2 1 0.8661 0.7717 3.3786 3 Median NaN NaN NaN 0 0 Median 0.90022 0.7717 NaN 1 0 Median 0.83148 0.78702 4.5004 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32041000 16956000 15086000 0 0 0 7005400 3595500 3409900 25036000 13360000 11676000 0 0 0 0 0 0 0 0 0 21962 1287 22915 116006;116007;116008;116009 116981;116982;116983;116984;116985;116986;116987 116983 7 LPEGDLGKEIEQK LSLLQDSGEVREDLRLPEGDLGKEIEQKYD LRLPEGDLGKEIEQKYDCGEEILITVLSAM R L P Q K Y 0 0 0 1 0 1 3 2 0 1 2 2 0 0 1 0 0 0 0 0 0 0 13 1 1454.7617 I3L397;I3L504;P63241;Q6IS14 I3L397 114 126 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 2;3 4.1829E-07 116.55 By MS/MS By MS/MS By MS/MS 1 2 2 0.83805 0.79396 7.7971 5 Median 0.89191 0.8922 NaN 1 0 Median 0.86101 0.76136 5.93 2 0 Median 0.80294 0.81096 6.252 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45125000 23442000 21683000 6805000 3381400 3423600 8012600 3870200 4142400 30308000 16190000 14117000 0 0 0 0 0 0 0 0 0 21963 1287 22916 116010;116011;116012;116013;116014 116988;116989;116990;116991;116992;116993;116994;116995;116996;116997 116995 10 LPEGPPNFLR ASDMLYFKRLIQIPRLPEGPPNFLRASALA IQIPRLPEGPPNFLRASALAEHIKPVVVIP R L P L R A 0 1 1 0 0 0 1 1 0 0 2 0 0 1 3 0 0 0 0 0 0 0 10 0 1138.6135 O75146 O75146 282 291 HIP1R Huntingtin-interacting protein 1-related protein yes yes 2 0.013464 40.002 By MS/MS By matching 1 1 0.60931 0.59863 34.296 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42825 0.46972 NaN 1 0 Median 0.8669 0.76293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2821100 1877400 943670 0 0 0 0 0 0 2601600 1788400 813160 219540 89028 130510 0 0 0 0 0 0 21964 1647 22917 116015;116016 116998 116998 1 LPEGVVPK PLPRHSGLLPNHRPRLPEGVVPKSKPQLNR LPNHRPRLPEGVVPKSKPQLNRYLTRWAPG R L P P K S 0 0 0 0 0 0 1 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 8 0 837.496 Q5QPA5;Q9NVS2 Q5QPA5 209 216 MRPS18A 28S ribosomal protein S18a, mitochondrial yes no 2 0.036811 37.558 By matching By MS/MS 1 1 1.299 1.1794 7.0658 2 Median 1.1804 1.122 NaN 1 0 Median 1.4296 1.2399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3781000 1725200 2055800 2307100 1128600 1178500 1473900 596590 877310 0 0 0 0 0 0 0 0 0 0 0 0 21965 3068 22918 116017;116018 116999 116999 1 LPEHPEGGEPEDDEAPAK RHSEVETDSKKKKMKLPEHPEGGEPEDDEA HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K L P A K G 2 0 0 2 0 0 5 2 1 0 1 1 0 0 4 0 0 0 0 0 0 0 18 0 1915.8436 Q9NX58 Q9NX58 289 306 LYAR Cell growth-regulating nucleolar protein yes yes 3 3.3988E-06 50.831 By MS/MS By MS/MS By MS/MS 1 1 1 1.0529 0.90212 31.464 3 Median NaN NaN NaN 0 0 Median 1.0529 0.90212 NaN 1 1 Median 0.57551 0.56253 NaN 1 0 Median 1.1425 1.0212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12725000 6878200 5847300 0 0 0 2489200 1111200 1377900 6904600 4211600 2693100 3331600 1555400 1776300 0 0 0 0 0 0 21966 4160 22919 116019;116020;116021 117000;117001;117002;117003;117004 117001 5 LPEIEEYYDGNTSSNSR AEWHDSDWILSVPAKLPEIEEYYDGNTSSN EIEEYYDGNTSSNSRQRSGWSSGRSGRSGR K L P S R Q 0 1 2 1 0 0 3 1 0 1 1 0 0 0 1 3 1 0 2 0 0 0 17 0 1972.865 Q9BQ39;A0A087WVC1 Q9BQ39 661 677 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.0046142 31.228 By MS/MS By matching By matching 2 1 1 0.88873 0.87573 26.457 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78076 0.82935 43.534 2 0 Median 1.1355 0.96162 NaN 1 0 Median 0.74752 0.79751 NaN 1 0 Median NaN NaN NaN 0 0 Median 7497300 4298200 3199200 0 0 0 0 0 0 5608800 3348800 2260000 395910 143490 252420 1492600 805870 686760 0 0 0 21967 3781 22920 116022;116023;116024;116025 117005;117006 117006 2 LPELAALR L P L R 2 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 881.53345 REV__H7C2N5 yes yes 2 0.031031 38.792 By MS/MS 1 1.2834 1.0734 NaN 1 Median NaN NaN NaN 0 0 Median 1.2834 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6000000 2691500 3308500 0 0 0 6000000 2691500 3308500 0 0 0 0 0 0 0 0 0 0 0 0 + 21968 4528 22921 116026 117007 117007 1 LPENLYNDR DTIYEDEDVKEAIRRLPENLYNDRMFRIKR KEAIRRLPENLYNDRMFRIKRALDLNLKHQ R L P D R M 0 1 2 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1132.5513 P14927;B7Z2R2;E5RHG9 P14927 51 59 UQCRB Cytochrome b-c1 complex subunit 7 yes no 2 0.00071783 102.51 By matching By MS/MS By matching 1 2 1 1.3744 1.1291 17.699 4 Linear 1.1733 1.1456 NaN 1 0 Median 1.3962 1.1811 8.4211 2 0 Median NaN NaN NaN 0 0 Median 1.0416 0.83286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13123000 5613400 7510000 2655800 1164500 1491300 10341000 4387500 5953700 0 0 0 126320 61376 64949 0 0 0 0 0 0 21969 630 22922 116027;116028;116029;116030 117008;117009 117009 2 LPENQAIQMR VLAQLLDTLLAIGTKLPENQAIQMRLVDVA AIGTKLPENQAIQMRLVDVACKHLTDTSHG K L P M R L 1 1 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 10 0 1198.6128 Q96HW7 Q96HW7 141 150 INTS4 Integrator complex subunit 4 yes yes 2 0.0023764 75.38 By MS/MS 2 0.87709 0.93994 19.945 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87709 0.93994 19.945 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7598000 3784100 3813900 0 0 0 0 0 0 7598000 3784100 3813900 0 0 0 0 0 0 0 0 0 21970 3671 22923 116031;116032 117010;117011;117012 117012 3 LPENYTDETWQK SAKKLVIKNFKDKPKLPENYTDETWQKLKE KPKLPENYTDETWQKLKEAVEAIQNSTSIK K L P Q K L 0 0 1 1 0 1 2 0 0 0 1 1 0 0 1 0 2 1 1 0 0 0 12 0 1522.694 Q13620;K4DI93;A6NE76 Q13620 208 219 CUL4B Cullin-4B yes no 2 7.8881E-05 93.058 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0861 0.97327 28.015 5 Median 0.85722 0.77461 NaN 1 0 Median 1.183 1.0342 NaN 1 0 Median 0.89202 0.97327 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5902 1.6332 NaN 1 1 Median 1.0861 0.90403 NaN 1 0 Median 38132000 18912000 19219000 13579000 7004400 6574100 5419900 2503400 2916500 11080000 5989100 5091000 0 0 0 7160600 2983800 4176800 892670 431790 460880 21971 1358 22924 116033;116034;116035;116036;116037 117013;117014;117015;117016;117017 117016 5 LPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP VEEAIVARLPEPTTRLPREKPLPRPRPLTR R L P T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 0 2 0 0 0 0 0 7 0 812.43922 Q15050 Q15050 92 98 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.018274 63.306 By matching By MS/MS By matching 1 2 2 0.84373 0.7272 54.715 5 Median NaN NaN NaN 0 0 Median 1.9387 1.9908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76091 0.78769 14.989 2 0 Median 0.69031 0.56929 34.622 2 0 Median 10850000 5323700 5526700 0 0 0 2653900 1003200 1650700 0 0 0 0 0 0 5668100 3028300 2639800 2528300 1292200 1236200 21972 2920 22925 116038;116039;116040;116041;116042 117018 117018 1 LPETHQLLQLR ASLWTSLSLLLPPHKLPETHQLLQLRRFAH PPHKLPETHQLLQLRRFAHGTAGLVFLTAL K L P L R R 0 1 0 0 0 2 1 0 1 0 4 0 0 0 1 0 1 0 0 0 0 0 11 0 1346.767 Q7KZN9 Q7KZN9 251 261 COX15 Cytochrome c oxidase assembly protein COX15 homolog yes yes 3 4.9492E-05 77.64 By MS/MS By MS/MS 2 2 1.0568 0.93408 16.368 4 Median 0.84051 0.8261 8.8165 2 0 Median 1.2855 1.0624 9.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35248000 16477000 18771000 17288000 8403600 8884600 17960000 8073100 9886600 0 0 0 0 0 0 0 0 0 0 0 0 21973 3215 22926 116043;116044;116045;116046 117019;117020;117021;117022 117019 4 LPETNLFETEETR RINMVEELEKALGMKLPETNLFETEETRKI MKLPETNLFETEETRKILDDICVAKAVECP K L P T R K 0 1 1 0 0 0 4 0 0 0 2 0 0 1 1 0 3 0 0 0 0 0 13 0 1577.7573 Q15046 Q15046 408 420 KARS Lysine--tRNA ligase yes yes 2 8.3164E-07 118.9 By MS/MS By matching 2 1 1.021 0.96752 19.377 3 Plateau 0.8422 0.80212 26.513 2 0 Median 1.0089 0.87314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25073000 13166000 11908000 19663000 10528000 9135700 5409900 2637900 2772000 0 0 0 0 0 0 0 0 0 0 0 0 21974 2919 22927 116047;116048;116049 117023;117024;117025;117026 117025 4 LPETNLFETEETRK RINMVEELEKALGMKLPETNLFETEETRKI KLPETNLFETEETRKILDDICVAKAVECPP K L P R K I 0 1 1 0 0 0 4 0 0 0 2 1 0 1 1 0 3 0 0 0 0 0 14 1 1705.8523 Q15046 Q15046 408 421 KARS Lysine--tRNA ligase yes yes 2;3 5.7203E-05 90.653 By MS/MS By MS/MS By MS/MS 5 1 1 1.0027 0.96406 41.732 7 Median 0.97283 0.96406 48.274 5 2 Median 1.0027 0.9146 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1068 1.0148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 113870000 51146000 62725000 102110000 45847000 56266000 9231700 4090100 5141600 0 0 0 2526900 1209000 1317900 0 0 0 0 0 0 21975 2919 22928 116050;116051;116052;116053;116054;116055;116056 117027;117028;117029;117030;117031 117028 4 LPETVHTAVR ENNPTLVEVLEGVVRLPETVHTAVRYTSIE EGVVRLPETVHTAVRYTSIELVGEMSEVVD R L P V R Y 1 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 2 0 0 2 0 0 10 0 1121.6193 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 469 478 TNPO3 Transportin-3 yes no 2 0.0035251 56.432 By MS/MS By matching 1 1 0.96076 0.83606 0.61709 2 Median NaN NaN NaN 0 0 Median 0.96067 0.83242 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96086 0.83972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4350900 1939800 2411100 0 0 0 3866500 1720700 2145800 0 0 0 484430 219120 265310 0 0 0 0 0 0 21976 4461 22929 116057;116058 117032 117032 1 LPEYNPR IARDESETEKEKIKKLPEYNPRTL______ TEKEKIKKLPEYNPRTL_____________ K L P P R T 0 1 1 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 7 0 887.45012 Q9P258 Q9P258 514 520 RCC2 Protein RCC2 yes yes 2 0.016985 67.035 By MS/MS By MS/MS 1 1 0.85123 0.79994 2.7962 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76097 0.78428 NaN 1 0 Median 0.9522 0.81592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10596000 5729100 4867100 0 0 0 0 0 0 5013200 2900200 2113000 5583000 2828900 2754000 0 0 0 0 0 0 21977 4214 22930 116059;116060 117033;117034;117035 117034 3 LPFAAAQIGNSFR IFLNFKRLLEFNQGKLPFAAAQIGNSFRNE GKLPFAAAQIGNSFRNEISPRSGLIRVREF K L P F R N 3 1 1 0 0 1 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 13 0 1390.7357 P41250 P41250 319 331 GARS Glycine--tRNA ligase yes yes 2 4.2761E-10 174.98 By MS/MS By MS/MS 2 1 1.0369 0.98033 17.165 3 Median 1.0996 1.0569 10.63 2 0 Median 0.93562 0.80898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44336000 22159000 22177000 38083000 18972000 19110000 6253300 3186200 3067100 0 0 0 0 0 0 0 0 0 0 0 0 21978 2301 22931 116061;116062;116063 117036;117037;117038;117039;117040 117037 5 LPFPIIDDR SKDINAYNCEEPTEKLPFPIIDDRNRELAI EEPTEKLPFPIIDDRNRELAILLGMLDPAE K L P D R N 0 1 0 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 9 0 1084.5917 P30041 P30041 98 106 PRDX6 Peroxiredoxin-6 yes yes 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.89248 0.77698 25.643 7 Median 0.81477 0.78626 24.736 2 0 Median 0.89248 0.77698 18.724 3 0 Median 0.7666 0.73628 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3909 1.3518 NaN 1 0 Median NaN NaN NaN 0 0 Median 214450000 108360000 106090000 163750000 83686000 80063000 27377000 12377000 15000000 22449000 11981000 10468000 0 0 0 874130 314530 559600 0 0 0 21979 2179 22932 116064;116065;116066;116067;116068;116069;116070 117041;117042;117043;117044;117045;117046 117044 6 LPFPIIDDRNR SKDINAYNCEEPTEKLPFPIIDDRNRELAI PTEKLPFPIIDDRNRELAILLGMLDPAEKD K L P N R E 0 2 1 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 11 1 1354.7357 P30041 P30041 98 108 PRDX6 Peroxiredoxin-6 yes yes 2;3 5.6515E-05 126.52 By MS/MS By matching By matching 3 1 1 0.81842 0.87484 47.877 5 Median 0.81842 0.87484 24.464 3 1 Plateau 1.0335 0.8777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.908 2.0692 NaN 1 0 Median NaN NaN NaN 0 0 Median 75396000 38234000 37161000 71821000 36893000 34928000 2416800 1132300 1284500 0 0 0 0 0 0 1157500 208340 949170 0 0 0 21980 2179 22933 116071;116072;116073;116074;116075 117047;117048;117049 117048 3 LPFSGFR EKEAGVGNGTCAPVRLPFSGFRLQKVLRES NGTCAPVRLPFSGFRLQKVLRESARDKIIF R L P F R L 0 1 0 0 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 7 0 822.43882 Q96C86 Q96C86 42 48 DCPS m7GpppX diphosphatase yes yes 2 0.050767 52.683 By MS/MS 1 0.93229 0.92771 NaN 1 Median 0.93229 0.92771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3775500 2074100 1701400 3775500 2074100 1701400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21981 3616 22934 116076 117050 117050 1 LPFTPLSYIQGLSHR MGMFNSIFDGRVVAKLPFTPLSYIQGLSHR LPFTPLSYIQGLSHRNLLGDDTTDCSFIFL K L P H R N 0 1 0 0 0 1 0 1 1 1 3 0 0 1 2 2 1 0 1 0 0 0 15 0 1727.9359 J3QQY2;Q9UM00;J3KS45 J3QQY2 33 47 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 2;3 3.3831E-09 98.353 By MS/MS By matching 4 1 0.97107 0.96046 19.086 5 Median 0.98491 0.97631 12.888 4 0 Median 0.82139 0.70064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17445000 8531600 8913300 16387000 7933000 8453600 1058300 598570 459770 0 0 0 0 0 0 0 0 0 0 0 0 21982 1345 22935 116077;116078;116079;116080;116081 117051;117052;117053;117054;117055 117051 5 LPGAIDVIGQTITISR WQDRYGRAESPDLRRLPGAIDVIGQTITIS PGAIDVIGQTITISRVEGRRRANENSNIQV R L P S R V 1 1 0 1 0 1 0 2 0 4 1 0 0 0 1 1 2 0 0 1 0 0 16 0 1652.9461 Q6UN15;A0A0B4J203 Q6UN15 310 325 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 2.0504E-06 87.001 By matching By MS/MS By matching 1 2 1 1.0318 0.96934 13.161 4 Median NaN NaN NaN 0 0 Median 1.0995 0.95196 NaN 1 0 Median 0.90589 0.92591 9.0417 2 0 Median NaN NaN NaN 0 0 Median 1.1382 1.1883 NaN 1 0 Median NaN NaN NaN 0 0 Median 11943000 6078000 5865500 0 0 0 1080200 527890 552360 10593000 5443500 5149200 0 0 0 270500 106580 163920 0 0 0 21983 3185 22936 116082;116083;116084;116085 117056;117057 117056 2 LPGDKGLVLMSR KYDGKWEVEEMKESKLPGDKGLVLMSRAKH ESKLPGDKGLVLMSRAKHHAISAKLNKPFL K L P S R A 0 1 0 1 0 0 0 2 0 0 3 1 1 0 1 1 0 0 0 1 0 0 12 1 1284.7224 P27824;H0Y9Q7;D6RGY2;D6RAU8;D6RB85;D6RDP7;D6RFL1 P27824 114 125 CANX Calnexin yes no 2;3 1.864E-05 163.84 By MS/MS 2 1.069 1.0995 7.6488 2 Median 1.069 1.0995 7.6488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51142000 24828000 26314000 51142000 24828000 26314000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21984 2158 22937 116086;116087 117058;117059;117060;117061 117059 4 LPGEGNAGLLGLGPEAAAPGKR NGGGGSATARGGEYRLPGEGNAGLLGLGPE GLLGLGPEAAAPGKRIRKPSLLYEGFESPT R L P K R I 4 1 1 0 0 0 2 6 0 0 4 1 0 0 3 0 0 0 0 0 0 0 22 1 2044.1065 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0Y799;A0A140T9X8;E9PKQ9 H0Y6K2 17 38 BRD2 Bromodomain-containing protein 2 yes no 3 2.7243E-12 64.203 By MS/MS By MS/MS By matching 1 1 1 0.67418 0.5956 17.955 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52368 0.59402 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73823 0.81177 NaN 1 1 Median 0.67418 0.5956 NaN 1 0 Median 13081000 7832900 5248300 0 0 0 0 0 0 7712400 4919000 2793400 0 0 0 5064600 2741700 2322900 304230 172140 132090 21985 279 22938 116088;116089;116090 117062;117063 117062 2 LPGELEPVQATQNK ELAEQLGLSTGEKEKLPGELEPVQATQNKT KLPGELEPVQATQNKTGKYVPPSLRDGASR K L P N K T 1 0 1 0 0 2 2 1 0 0 2 1 0 0 2 0 1 0 0 1 0 0 14 0 1522.7991 O75821;K7ER90;K7EL20;K7EP16 O75821 196 209 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 7.5235E-08 122.69 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.8331 0.76797 11.965 5 Median 0.8331 0.7677 NaN 1 0 Median 0.87535 0.75663 22.982 2 0 Median 0.79403 0.81975 NaN 1 0 Median 0.90483 0.76797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80887000 43892000 36995000 27661000 14574000 13087000 24588000 12754000 11834000 23718000 14336000 9382700 4919400 2228000 2691300 0 0 0 0 0 0 21986 1697 22939 116091;116092;116093;116094;116095 117064;117065;117066;117067;117068;117069;117070;117071 117065 8 LPGGELNPGEDEVEGLK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GGELNPGEDEVEGLKRLMTEILGRQDGVLQ K L P L K R 0 0 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 17 0 1751.8578 O43809;H3BND3;H3BV41 O43809 106 122 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 3.021E-13 117.93 By matching By MS/MS By matching 1 2 1 0.7133 0.63883 10.415 4 Median NaN NaN NaN 0 0 Median 0.74553 0.63726 NaN 1 0 Median 0.62796 0.60335 8.4286 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88613 0.73328 NaN 1 0 Median 79339000 45418000 33922000 0 0 0 674820 386080 288740 74130000 42667000 31463000 0 0 0 0 0 0 4534300 2364900 2169400 21987 1592 22940 116096;116097;116098;116099 117072;117073;117074 117073 3 LPGGELNPGEDEVEGLKR LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GELNPGEDEVEGLKRLMTEILGRQDGVLQD K L P K R L 0 1 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 18 1 1907.9589 O43809;H3BND3;H3BV41 O43809 106 123 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2;3 1.0113E-12 148.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.79906 0.76485 20.083 6 Median NaN NaN NaN 0 0 Median 0.69163 0.64048 NaN 1 0 Median 0.6891 0.72729 0.57676 2 0 Median 1.0995 0.97332 23.91 2 0 Median NaN NaN NaN 0 0 Median 0.91274 0.80107 NaN 1 0 Median 126270000 70771000 55503000 0 0 0 7304700 3638300 3666400 98011000 56479000 41532000 6914500 3434900 3479500 0 0 0 14044000 7219400 6825000 21988 1592 22941 116100;116101;116102;116103;116104;116105 117075;117076;117077;117078;117079;117080;117081;117082 117078 8 LPGGNEIGMVAWK ELVLDDQGQLVHMNRLPGGNEIGMVAWKMT NRLPGGNEIGMVAWKMTFKSPEYPEGRDII R L P W K M 1 0 1 0 0 0 1 3 0 1 1 1 1 0 1 0 0 1 0 1 0 0 13 0 1370.7017 Q13085 Q13085 1651 1663 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.00034487 76.228 By MS/MS By matching 3 1 1.0779 0.99991 42.424 4 Median 0.81834 0.82079 50.218 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4199 1.2181 NaN 1 0 Median 21500000 11627000 9873700 21131000 11441000 9690300 0 0 0 0 0 0 0 0 0 0 0 0 369280 185890 183380 21989 2784 22942 116106;116107;116108;116109 117083;117084 117083 2 LPGGPTLTFQVK ILSKTETNVYFKLMRLPGGPTLTFQVKKYS LMRLPGGPTLTFQVKKYSLVRDVVSSLRRH R L P V K K 0 0 0 0 0 1 0 2 0 0 2 1 0 1 2 0 2 0 0 1 0 0 12 0 1256.7129 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3;C9JHF7 A0A0A6YYI3 102 113 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.00061737 67.334 By matching By MS/MS By matching 1 1 1 0.76457 0.7226 1.3419 3 Median 0.76457 0.7226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74378 0.709 NaN 1 0 Median 0.85361 0.72762 NaN 1 0 Median 13265000 7259100 6005400 5177700 2921800 2255900 0 0 0 0 0 0 0 0 0 7690700 4117700 3573100 396130 219690 176440 21990 205 22943 116110;116111;116112 117085;117086 117086 2 LPGGVQNFPQFSALR NPTTVLESPHSLPAKLPGGVQNFPQFSALR LPGGVQNFPQFSALRFLVVTQKAAFTCIKN K L P L R F 1 1 1 0 0 2 0 2 0 0 2 0 0 2 2 1 0 0 0 1 0 0 15 0 1629.8627 Q7Z6Z7 Q7Z6Z7 1226 1240 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 3.3892E-08 124.12 By MS/MS By MS/MS By MS/MS 3 2 1 0.93772 0.86209 22.726 6 Median 0.76397 0.72614 11.882 3 1 Median 1.0272 0.86209 3.063 2 0 Median 1.2165 1.3412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96931000 52903000 44028000 87502000 48487000 39016000 6704800 3209500 3495300 2724200 1207200 1517000 0 0 0 0 0 0 0 0 0 21991 3253 22944 116113;116114;116115;116116;116117;116118 117087;117088;117089;117090;117091;117092;117093;117094;117095 117088 9 LPGHAGSINEVAFHPDEPIIISASSDK FVYVWDTTSRRILYKLPGHAGSINEVAFHP FHPDEPIIISASSDKRLYMGEIQ_______ K L P D K R 3 0 1 2 0 0 2 2 2 4 1 1 0 1 3 4 0 0 0 1 0 0 27 0 2800.4032 Q96DI7;Q9NSS8 Q96DI7 323 349 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 4 2.1256E-07 38.874 By MS/MS 1 0.5366 0.51307 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5366 0.51307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3080600 1997700 1082900 0 0 0 0 0 0 3080600 1997700 1082900 0 0 0 0 0 0 0 0 0 21992 3627 22945 116119 117096 117096 1 LPGHAGSINEVAFHPDEPIIISASSDKR FVYVWDTTSRRILYKLPGHAGSINEVAFHP HPDEPIIISASSDKRLYMGEIQ________ K L P K R L 3 1 1 2 0 0 2 2 2 4 1 1 0 1 3 4 0 0 0 1 0 0 28 1 2956.5043 Q96DI7;Q9NSS8 Q96DI7 323 350 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 4;5 6.9814E-17 71.085 By matching By MS/MS By matching 1 4 2 0.63462 0.69664 13.587 7 Median NaN NaN NaN 0 0 Median 0.74381 0.69664 NaN 1 0 Median 0.61222 0.69859 10.098 4 1 Median 0.73828 0.64826 27.115 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88921000 55116000 33805000 0 0 0 2503200 1456500 1046700 83976000 52358000 31619000 2441500 1302200 1139300 0 0 0 0 0 0 21993 3627 22946 116120;116121;116122;116123;116124;116125;116126 117097;117098;117099;117100 117099 4 LPGLIDVHVHLR LKVHVDCMTSQKLVRLPGLIDVHVHLREPG LVRLPGLIDVHVHLREPGGTHKEDFASGTA R L P L R E 0 1 0 1 0 0 0 1 2 1 3 0 0 0 1 0 0 0 0 2 0 0 12 0 1367.8038 F8VPD4;P27708;H7C3Z5 F8VPD4 1401 1412 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.00017946 62.408 By MS/MS By matching 2 1 1.0219 0.95354 10.463 3 Median 1.0224 1.0065 7.6472 2 0 Median 1.0219 0.86187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8861800 4757500 4104200 7864200 4193900 3670400 997540 563690 433850 0 0 0 0 0 0 0 0 0 0 0 0 21994 1057 22947 116127;116128;116129 117101 117101 1 LPGLQATVR IATIHSRLQDSQLWKLPGLQATVRLAWALA DSQLWKLPGLQATVRLAWALALRGISQLPD K L P V R L 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 0 0 9 0 953.56581 Q92621 Q92621 322 330 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00042628 129.47 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.5362 1.3138 25.155 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95715 1.0434 NaN 1 0 Median 1.3066 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0059 1.649 13.452 2 0 Median 61478000 30655000 30823000 0 0 0 0 0 0 49276000 25510000 23765000 6416300 3069200 3347100 0 0 0 5786600 2075500 3711000 21995 3547 22948 116130;116131;116132;116133;116134 117102;117103;117104;117105;117106;117107;117108;117109;117110 117104 9 LPGNLFQR LVRTVCVRSPRQRNRLPGNLFQRWHVPLEL SPRQRNRLPGNLFQRWHVPLELQMTRQMAS R L P Q R W 0 1 1 0 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 943.52395 O95831;E9PMQ8 O95831 34 41 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.048306 35.105 By MS/MS 1 1.1939 1.2683 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1939 1.2683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1944900 778980 1165900 0 0 0 0 0 0 1944900 778980 1165900 0 0 0 0 0 0 0 0 0 21996 1797 22949 116135 117111 117111 1 LPGNTNVNYR WSWISKTHVYRFVPKLPGNTNVNYRKSLEG RFVPKLPGNTNVNYRKSLEGTKNNMDENMD K L P Y R K 0 1 3 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 10 0 1146.5782 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1049 1058 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0002133 114.5 By MS/MS By MS/MS 3 3 0.81223 0.74833 6.4928 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76585 0.80891 NaN 1 1 Median 0.81759 0.72168 5.1496 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13949000 7165900 6783500 0 0 0 0 0 0 9639900 4939700 4700200 4309500 2226200 2083300 0 0 0 0 0 0 21997 2762 22950 116136;116137;116138;116139;116140;116141 117112;117113;117114;117115;117116;117117 117113 6 LPGPTGSVVSTGTSFSSSSPGLASAGAAEGK VSFQPLARSTPRASRLPGPTGSVVSTGTSF SSSPGLASAGAAEGKQGAESDQAEPIICSS R L P G K Q 4 0 0 0 0 0 1 6 0 0 2 1 0 1 3 8 3 0 0 2 0 0 31 0 2763.3563 Q7Z434 Q7Z434 240 270 MAVS Mitochondrial antiviral-signaling protein yes yes 3 3.1465E-05 27.632 By MS/MS 1 0.89306 0.85103 NaN 1 Median 0.89306 0.85103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6416200 3542200 2874000 6416200 3542200 2874000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21998 3244 22951 116142 117118 117118 1 LPGQEDHSSQNPLIMR AEATQSSKPGSVMLRLPGQEDHSSQNPLIM PGQEDHSSQNPLIMRRRVRSFISPIPSKRQ R L P M R R 0 1 1 1 0 2 1 1 1 1 2 0 1 0 2 2 0 0 0 0 0 0 16 0 1820.8839 Q9UGU0 Q9UGU0 1239 1254 TCF20 Transcription factor 20 yes yes 3 0.0032264 26.781 By MS/MS 1 0.55935 0.57984 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55935 0.57984 NaN 1 0 Median NaN NaN NaN 0 0 Median 7114900 3669700 3445200 0 0 0 0 0 0 0 0 0 0 0 0 7114900 3669700 3445200 0 0 0 21999 4265 22952 116143 117119 117119 1 LPGQLLPGHGLQPPQGPPGGQAGGLR VLALSPSQSPRLLTKLPGQLLPGHGLQPPQ QPPQGPPGGQAGGLRLTPGGMALPGQPGGP K L P L R L 1 1 0 0 0 4 0 8 1 0 5 0 0 0 6 0 0 0 0 0 0 0 26 0 2498.3506 O14686 O14686 3631 3656 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 1.0542E-19 70.315 By MS/MS By matching 2 1 0.30032 0.33089 14.93 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29097 0.31272 7.9889 2 0 Median 0.45809 0.39729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30956000 24603000 6353200 0 0 0 0 0 0 30641000 24405000 6236800 314820 198450 116370 0 0 0 0 0 0 22000 1490 22953 116144;116145;116146 117120;117121 117120 2 LPGSGAVQAASPER PPSPAPAAPGARLLRLPGSGAVQAASPERA RLPGSGAVQAASPERAGWTEALRAAVAELR R L P E R A 3 1 0 0 0 1 1 2 0 0 1 0 0 0 2 2 0 0 0 1 0 0 14 0 1338.6892 Q86U90 Q86U90 50 63 YRDC YrdC domain-containing protein, mitochondrial yes yes 2 0.0057099 53.967 By MS/MS By MS/MS By matching 1 1 1 0.78572 0.75072 73.53 3 Median NaN NaN NaN 0 0 Median 1.5062 1.2775 NaN 1 1 Median 0.78572 0.75072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34415 0.29869 NaN 1 0 Median 7615300 3952300 3663000 0 0 0 2375500 907660 1467900 3909000 2188300 1720700 0 0 0 0 0 0 1330800 856320 474460 22001 3274 22954 116147;116148;116149 117122;117123 117123 2 LPGYLMG VLLSFFMARVFMRMKLPGYLMG________ ARVFMRMKLPGYLMG_______________ K L P M G - 0 0 0 0 0 0 0 2 0 0 2 0 1 0 1 0 0 0 1 0 0 0 7 0 749.3782 Q9NRP0 Q9NRP0 143 149 OSTC Oligosaccharyltransferase complex subunit OSTC yes yes 1 0.027356 69.641 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 859070 0 0 0 0 0 859070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22002 4086 22955 116150 117124 117124 1 LPHFQLSR LLANALTSALRLHQRLPHFQLSRAFLAQAL ALRLHQRLPHFQLSRAFLAQALLEDSCHYL R L P S R A 0 1 0 0 0 1 0 0 1 0 2 0 0 1 1 1 0 0 0 0 0 0 8 0 996.5505 P57088;D6RAA6;H0Y8N0 P57088 74 81 TMEM33 Transmembrane protein 33 yes no 2 0.029165 60.478 By MS/MS 1 0.62635 0.51094 NaN 1 Median NaN NaN NaN 0 0 Median 0.62635 0.51094 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9316200 5803900 3512300 0 0 0 9316200 5803900 3512300 0 0 0 0 0 0 0 0 0 0 0 0 22003 2516 22956 116151 117125 117125 1 LPHIIGGSDLIAHHAR NFKKFKKVTYPGAGKLPHIIGGSDLIAHHA PHIIGGSDLIAHHARKNTELEEWLRQEMEV K L P A R K 2 1 0 1 0 0 0 2 3 3 2 0 0 0 1 1 0 0 0 0 0 0 16 0 1705.9376 O60934;A0A0C4DG07;A0A087X1V5 O60934 699 714 NBN Nibrin yes no 4 0.00021672 56.648 By MS/MS 1 0.85418 0.91036 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85418 0.91036 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6047900 3261700 2786200 0 0 0 0 0 0 6047900 3261700 2786200 0 0 0 0 0 0 0 0 0 22004 1641 22957 116152 117126 117126 1 LPHLEAVVIGR VCWLVRQDSRHQRIRLPHLEAVVIGRGPET QRIRLPHLEAVVIGRGPETKITDKKCSRQQ R L P G R G 1 1 0 0 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1202.7135 F8W6G5;C9JZ40;Q7Z2E3;A0A0A0MRW7;C9J8U3;F8WBD6;E7EUY4;F8WBM3;Q6JV79;E7EVB7 F8W6G5 33 43 APTX Aprataxin yes no 3 0.00076925 51.276 By MS/MS 1 0.73206 0.79375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73206 0.79375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3156800 1754900 1402000 0 0 0 0 0 0 3156800 1754900 1402000 0 0 0 0 0 0 0 0 0 22005 730 22958 116153 117127 117127 1 LPHLLLYGPPGTGK QDILSTIQKFINEDRLPHLLLYGPPGTGKT RLPHLLLYGPPGTGKTSTILACAKQLYKDK R L P G K T 0 0 0 0 0 0 0 3 1 0 4 1 0 0 3 0 1 0 1 0 0 0 14 0 1461.8344 P40937;C9JH72;F5H304;F5H0U6 P40937 53 66 RFC5 Replication factor C subunit 5 yes no 3 0.00062461 43.761 By MS/MS 1 0.73015 0.70014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73015 0.70014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5409800 2982400 2427400 0 0 0 0 0 0 5409800 2982400 2427400 0 0 0 0 0 0 0 0 0 22006 2293 22959 116154 117128;117129 117128 2 LPHSAHPSGKPPSAPASAPQNVFSTTVSSGYNTK PRLNHPPEQIDSHSRLPHSAHPSGKPPSAP QNVFSTTVSSGYNTKKIGKRLNIQLKKGTE R L P T K K 4 0 2 0 0 1 0 2 2 0 1 2 0 1 6 7 3 0 1 2 0 0 34 1 3418.6906 F5GZI3;Q5VWU8;Q5VWV2;Q8TEW0 F5GZI3 151 184 PARD3 Partitioning defective 3 homolog yes no 4 0.0011801 32.553 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3288100 3288100 0 0 0 0 0 0 0 3288100 3288100 0 0 0 0 0 0 0 0 0 0 22007 1015 22960 116155 117130 117130 1 LPHSVLLEIQK DAPRQVVNFGPGPAKLPHSVLLEIQKELLD GPAKLPHSVLLEIQKELLDYKGVGISVLEM K L P Q K E 0 0 0 0 0 1 1 0 1 1 3 1 0 0 1 1 0 0 0 1 0 0 11 0 1275.7551 Q9Y617 Q9Y617 17 27 PSAT1 Phosphoserine aminotransferase yes yes 2;3 0.00012935 119.21 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1.0476 0.94809 15.238 6 Median 1.0462 0.96273 13.658 2 0 Median 0.83914 0.72364 NaN 1 0 Median 1.0459 1.0079 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0983 1.0855 NaN 1 0 Median 1.0494 0.89182 NaN 1 0 Median 77952000 38910000 39042000 71432000 35566000 35866000 2206900 1333900 873040 1812000 897890 914110 0 0 0 1689200 727810 961430 812230 384560 427670 22008 4476 22961 116156;116157;116158;116159;116160;116161 117131;117132;117133 117133 3 LPIDKEEVSLR ISAFVEIIFDNSDNRLPIDKEEVSLRRVIG SDNRLPIDKEEVSLRRVIGAKKDQYFLDKK R L P L R R 0 1 0 1 0 0 2 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1297.7242 Q9UQE7 Q9UQE7 89 99 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 3.5822E-05 123.8 By matching By MS/MS By matching 1 1 1 0.85303 0.81977 27.81 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58155 0.66297 NaN 1 0 Median 0.85303 0.81977 NaN 1 0 Median 1.1001 1.1507 NaN 1 0 Median NaN NaN NaN 0 0 Median 7819700 3972300 3847400 0 0 0 0 0 0 1857500 934180 923290 4106300 2266900 1839400 1855900 771180 1084700 0 0 0 22009 4362 22962 116162;116163;116164 117134 117134 1 LPIDVTEGEVISLGLPFGK SRSAGVPSRVIHIRKLPIDVTEGEVISLGL VTEGEVISLGLPFGKVTNLLMLKGKNQAFI K L P G K V 0 0 0 1 0 0 2 3 0 2 3 1 0 1 2 1 1 0 0 2 0 0 19 0 1983.0928 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59;K7ELW5 A0A0U1RRM4 66 84 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 9.5444E-08 76.522 By MS/MS By MS/MS 1 2 0.68918 0.7173 6.0139 3 Median NaN NaN NaN 0 0 Median 0.87272 0.76375 NaN 1 0 Median 0.6878 0.69697 4.065 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9683600 5493900 4189700 0 0 0 1031500 524020 507450 8652200 4969900 3682300 0 0 0 0 0 0 0 0 0 22010 312 22963 116165;116166;116167 117135;117136;117137 117137 3 LPIFFFGTHETAFLGPK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG IFFFGTHETAFLGPKDIFPYSENKEKYGKP K L P P K D 1 0 0 0 0 0 1 2 1 1 2 1 0 4 2 0 2 0 0 0 0 0 17 0 1921.0138 O75475 O75475 40 56 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 2.9441E-05 54.471 By MS/MS By matching By matching 5 1 2 0.70026 0.68786 30.592 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69554 0.68029 21.974 5 0 Median 1.4859 1.3226 NaN 1 0 Median 0.65439 0.65303 31.785 2 0 Median NaN NaN NaN 0 0 Median 45527000 26729000 18799000 0 0 0 0 0 0 42484000 24888000 17597000 123710 61121 62589 2918900 1779600 1139300 0 0 0 22011 1674 22964 116168;116169;116170;116171;116172;116173;116174;116175 117138;117139;117140;117141 117140 4 LPIGDVATQYFADR LEKIHHSGAKVVLSKLPIGDVATQYFADRD KLPIGDVATQYFADRDMFCAGRVPEEDLKR K L P D R D 2 1 0 2 0 1 0 1 0 1 1 0 0 1 1 0 1 0 1 1 0 0 14 0 1564.7886 Q99832 Q99832 293 306 CCT7 T-complex protein 1 subunit eta yes yes 2 2.5888E-23 194.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 1 1.0388 0.89493 34.338 9 Median 1.0074 0.94638 NaN 1 0 Median 1.0181 0.88043 54.965 3 0 Median 1.1335 1.1234 NaN 1 0 Median 1.0431 0.88508 1.5644 2 0 Median 1.2278 1.2378 NaN 1 0 Median 0.76216 0.6371 NaN 1 0 Median 96112000 46671000 49440000 46691000 22689000 24002000 15157000 7672100 7485000 26932000 12966000 13966000 2833600 1324600 1508900 2628100 1134300 1493900 1869800 885080 984770 22012 3771 22965 116176;116177;116178;116179;116180;116181;116182;116183;116184 117142;117143;117144;117145;117146;117147;117148;117149;117150;117151;117152;117153;117154;117155;117156;117157;117158 117144 17 LPIGNTIQPSQAATFMNDAIEK PTPQPKTPSSSQPERLPIGNTIQPSQAATF QPSQAATFMNDAIEKARKAAELQARIQAQL R L P E K A 3 0 2 1 0 2 1 1 0 3 1 1 1 1 2 1 2 0 0 0 0 0 22 0 2358.1889 O43395 O43395 181 202 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2;3 2.2626E-09 54.223 By MS/MS By matching By matching 4 2 1 0.6645 0.71997 20.133 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63243 0.65845 6.1344 4 0 Median 0.95666 0.84908 23.328 2 0 Median 1.002 1.0282 NaN 1 0 Median NaN NaN NaN 0 0 Median 19828000 11727000 8101800 0 0 0 0 0 0 18446000 11073000 7372500 441510 221650 219850 941170 431720 509460 0 0 0 22013 1569 22966 116185;116186;116187;116188;116189;116190;116191 117159;117160;117161;117162;117163;117164 117159 6 LPIQEFHLSR SPVLMRHLTASEAKKLPIQEFHLSRILQEL SEAKKLPIQEFHLSRILQELGLNQEQFVDL K L P S R I 0 1 0 0 0 1 1 0 1 1 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1238.6772 P39748;I3L3E9 P39748 202 211 FEN1 Flap endonuclease 1 yes no 2;3 9.5554E-05 89.247 By matching By matching By MS/MS By MS/MS 1 1 4 3 1.0366 0.9173 26.269 8 Median 1.2164 1.2079 NaN 1 0 Median 1.0367 0.90437 NaN 1 0 Median 1.2237 1.3384 24.853 3 1 Median 0.91367 0.79215 11.487 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78808000 38508000 40299000 1562600 712940 849620 11471000 5683500 5787400 45464000 22088000 23376000 20310000 10024000 10286000 0 0 0 0 0 0 22014 2283 22967 116192;116193;116194;116195;116196;116197;116198;116199;116200 117165;117166;117167;117168;117169;117170;117171;117172 117168 8 LPISLTNTDLK ATNDLDRVSAVALPKLPISLTNTDLKVASD ALPKLPISLTNTDLKVASDTQFYPGLGLAL K L P L K V 0 0 1 1 0 0 0 0 0 1 3 1 0 0 1 1 2 0 0 0 0 0 11 0 1213.6918 Q9Y2X0;K7EKS6;U3KQB4;B9TWZ6;U3KQ43 Q9Y2X0 359 369 MED16 Mediator of RNA polymerase II transcription subunit 16 yes no 2 0.025094 33.263 By matching By matching By MS/MS By matching 2 1 2 2 1.0927 0.97541 24.121 7 Median 0.98221 0.94951 23.577 2 0 Median 1.0927 0.97541 NaN 1 0 Median 0.98281 1.0791 25.847 2 0 Median 0.98861 0.8777 42.791 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15456000 7280900 8175000 5066900 2493000 2573800 1199200 463970 735220 8104500 3790900 4313700 1085200 532960 552220 0 0 0 0 0 0 22015 4395 22968 116201;116202;116203;116204;116205;116206;116207 117173 117173 1 LPKDFYDKIEAK IDAYELLEAVEILSKLPKDFYDKIEAKKWQ LSKLPKDFYDKIEAKKWQERKEALESVEVL K L P A K K 1 0 0 2 0 0 1 0 0 1 1 3 0 1 1 0 0 0 1 0 0 0 12 2 1465.7817 Q14008 Q14008 280 291 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00019119 74.326 By matching By MS/MS By matching 1 2 1 0.84814 1.0007 20.183 4 Median 0.77893 0.85282 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84814 1.0007 4.1973 2 0 Median NaN NaN NaN 0 0 Median 1.1749 1.3753 NaN 1 0 Median NaN NaN NaN 0 0 Median 31115000 15714000 15402000 5405100 2893100 2512000 0 0 0 23304000 11840000 11465000 0 0 0 2405900 980810 1425100 0 0 0 22016 2850 22969 116208;116209;116210;116211 117174;117175 117175 2 LPKPVQDLIK EAVKKLTVNPGTKSKLPKPVQDLIKMIFDV GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K L P I K M 0 0 0 1 0 1 0 0 0 1 2 2 0 0 2 0 0 0 0 1 0 0 10 1 1149.7121 P09874 P09874 665 674 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0018962 94.692 By matching By matching By MS/MS By MS/MS By matching 1 1 2 4 2 0.92279 0.87958 11.459 10 Median 0.70086 0.73919 NaN 1 0 Median 0.93986 0.89135 NaN 1 0 Median 0.74538 0.86205 3.1886 2 0 Median 0.9857 0.97404 8.7688 4 0 Median NaN NaN NaN 0 0 Median 0.89908 0.80687 11.86 2 0 Median 114240000 62208000 52035000 3389700 1778400 1611300 416550 222840 193710 85886000 47419000 38467000 21989000 11425000 10565000 0 0 0 2561900 1362800 1199100 22017 1922 22970 116212;116213;116214;116215;116216;116217;116218;116219;116220;116221 117176;117177;117178;117179;117180;117181 117179 6 LPLAQVSAHPWVR QDLISKLLRHNPSERLPLAQVSAHPWVRAN ERLPLAQVSAHPWVRANSRRVLPPSALQSV R L P V R A 2 1 0 0 0 1 0 0 1 0 2 0 0 0 2 1 0 1 0 2 0 0 13 0 1472.8252 Q96GD4;J3KT86 Q96GD4 316 328 AURKB Aurora kinase B yes no 2;3 0.00026336 79.148 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 0.87949 0.87089 15.086 7 Median NaN NaN NaN 0 0 Median 0.95929 0.82711 NaN 1 0 Median 0.81218 0.83429 19.724 2 0 Median 1.2441 1.0476 NaN 1 0 Median 0.8578 0.88304 1.9595 2 0 Median 0.80658 0.68086 NaN 1 0 Median 20377000 10925000 9451300 0 0 0 120570 55811 64758 4240100 2671300 1568800 121820 63605 58213 14409000 7310300 7098600 1485100 824110 660990 22018 3656 22971 116222;116223;116224;116225;116226;116227;116228 117182;117183;117184;117185;117186 117186 5 LPLATIVK PKAAKTPLKIHPLVRLPLATIVKDLVAQAP KIHPLVRLPLATIVKDLVAQAPLKPKTPRG R L P V K D 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 853.56369 O94776 O94776 515 522 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0035089 91.9 By matching By MS/MS By matching By MS/MS By matching 1 2 2 4 2 0.93929 0.87118 14.401 11 Median NaN NaN NaN 0 0 Median 0.83853 0.72427 NaN 1 0 Median 0.98562 0.99219 10.337 2 0 Median 0.97617 0.84354 4.5591 2 0 Median 0.96161 0.96519 8.9565 4 0 Median 0.86979 0.72757 1.618 2 0 Median 41936000 21714000 20222000 0 0 0 2096100 1174400 921690 22907000 11560000 11346000 1346600 694650 651940 13264000 7067800 6196300 2322100 1216600 1105500 22019 1723 22972 116229;116230;116231;116232;116233;116234;116235;116236;116237;116238;116239 117187;117188;117189;117190 117188 4 LPLAVVGSNTIIEVNGK DDEEENKLVKKIKDRLPLAVVGSNTIIEVN LAVVGSNTIIEVNGKRVRGRQYPWGVAEVE R L P G K R 1 0 2 0 0 0 1 2 0 2 2 1 0 0 1 1 1 0 0 3 0 0 17 0 1722.988 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 224 240 SEPT7 Septin-7 yes no 2;3 2.6199E-10 100.55 By matching By MS/MS By matching 1 2 2 0.86824 0.80363 10.685 5 Median NaN NaN NaN 0 0 Median 0.86824 0.76975 NaN 1 0 Median 0.81114 0.79034 2.3594 2 0 Median 1.015 0.89911 14.792 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44816000 23385000 21431000 0 0 0 1766300 953820 812520 42163000 21999000 20164000 886040 432440 453600 0 0 0 0 0 0 22020 870 22973 116240;116241;116242;116243;116244 117191;117192;117193;117194;117195 117192 5 LPLAVVGSNTIIEVNGKR DDEEENKLVKKIKDRLPLAVVGSNTIIEVN AVVGSNTIIEVNGKRVRGRQYPWGVAEVEN R L P K R V 1 1 2 0 0 0 1 2 0 2 2 1 0 0 1 1 1 0 0 3 0 0 18 1 1879.0891 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 224 241 SEPT7 Septin-7 yes no 3 6.7685E-05 41.554 By MS/MS By matching 1 1 1.0514 1.0397 6.5079 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98082 0.99292 NaN 1 0 Median 1.127 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5922500 2662000 3260500 0 0 0 0 0 0 4960000 2197900 2762100 962510 464140 498360 0 0 0 0 0 0 22021 870 22974 116245;116246 117196;117197 117196 2 LPLDAPLPGSK EPGPRPALQPSPSIRLPLDAPLPGSKAKPK PSIRLPLDAPLPGSKAKPKPPKQAQKEQRK R L P S K A 1 0 0 1 0 0 0 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 11 0 1106.6336 B5MD46;Q9BXI6 B5MD46 324 334 TBC1D10A TBC1 domain family member 10A yes no 2 0.0026022 52.579 By matching By MS/MS 1 1 1.017 1.0121 36.654 2 Median 1.3621 1.3115 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75933 0.78101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5607400 2573300 3034100 2810700 1065800 1744900 0 0 0 2796700 1507500 1289200 0 0 0 0 0 0 0 0 0 22022 621 22975 116247;116248 117198 117198 1 LPLDKEPAR LQLEACETRTVHRLRLPLDKEPARECAQRI TVHRLRLPLDKEPARECAQRIAEQQKAQAE R L P A R E 1 1 0 1 0 0 1 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 9 1 1037.5869 Q15149;H0YDN1 Q15149 1146 1154 PLEC Plectin yes no 2 0.034648 51.854 By MS/MS 1 0.97584 0.90896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97584 0.90896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 435860 250410 185450 0 0 0 0 0 0 0 0 0 435860 250410 185450 0 0 0 0 0 0 22023 2933 22976 116249 117199 117199 1 LPLEAALR QLATGGLVCPARRLRLPLEAALRCGCLDED CPARRLRLPLEAALRCGCLDEDTQRQLSQA R L P L R C 2 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 881.53345 P58107;A0A075B730 P58107 413 420 EPPK1 Epiplakin yes no 2 0.0034702 94.262 By MS/MS By MS/MS By matching 2 1 1 1.2865 1.2566 10.195 4 Median 1.2621 1.2566 1.9343 2 0 Median 1.2834 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5495 1.3686 NaN 1 0 Median 16050000 7180400 8869600 9848300 4430800 5417500 6000000 2691500 3308500 0 0 0 0 0 0 0 0 0 201640 58102 143540 22024 2520 22977 116250;116251;116252;116253 117200;117201;117202;117203 117201 4 LPLETAYR QVATGGVIDPQHHHRLPLETAYRRGCLHKD DPQHHHRLPLETAYRRGCLHKDIYALISDQ R L P Y R R 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 8 0 961.52328 P58107;A0A075B730 P58107 2025 2032 EPPK1 Epiplakin yes no 2 0.0035231 91.041 By MS/MS By matching By MS/MS 2 1 1 1.0934 0.9153 55.566 4 Median NaN NaN NaN 0 0 Median 1.0853 0.89725 3.4693 2 0 Median NaN NaN NaN 0 0 Median 2.7905 2.7379 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0922 0.91108 NaN 1 0 Median 34069000 16001000 18068000 0 0 0 31942000 15262000 16679000 0 0 0 689470 123270 566200 0 0 0 1437700 615270 822400 22025 2520 22978 116254;116255;116256;116257 117204;117205;117206 117205 3 LPLFDSVR DVLQGYQWLLRDLPRLPLFDSVRSTTALAL LLRDLPRLPLFDSVRSTTALALQQAIHMET R L P V R S 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 8 0 945.52837 Q8N201 Q8N201 1036 1043 INTS1 Integrator complex subunit 1 yes yes 2 0.019541 47.082 By MS/MS By matching By matching 1 1 1 0.91369 1.0147 52.638 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91369 1.0147 NaN 1 0 Median 1.2187 1.0558 NaN 1 0 Median 0.40786 0.41618 NaN 1 0 Median NaN NaN NaN 0 0 Median 3535800 1711400 1824400 0 0 0 0 0 0 2984300 1354200 1630100 129410 56116 73294 422060 301050 121010 0 0 0 22026 3360 22979 116258;116259;116260 117207;117208 117208 2 LPLFGLGR ADVRRESRLLQLLGRLPLFGLGRLVTRKSW LLQLLGRLPLFGLGRLVTRKSWLWQHDEPC R L P G R L 0 1 0 0 0 0 0 2 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 871.52797 C9JJ19;P82930 C9JJ19 71 78 MRPS34 28S ribosomal protein S34, mitochondrial yes no 2 0.0043182 82.263 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2192 1.1711 10.091 5 Median 0.99867 0.94902 NaN 1 0 Median 1.4192 1.2001 NaN 1 0 Median 1.1263 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2192 1.203 NaN 1 0 Median 1.4435 1.1711 NaN 1 0 Median 42118000 20358000 21759000 28191000 14213000 13979000 6407500 2616400 3791100 4162800 2101200 2061600 0 0 0 2815000 1225100 1590000 541060 203150 337910 22027 702 22980 116261;116262;116263;116264;116265 117209;117210;117211;117212;117213;117214;117215 117210 7 LPLFPEPLHVFAPR TRRRAIILAAAPGEKLPLFPEPLHVFAPRA KLPLFPEPLHVFAPRACQLSVVVDDKKFVS K L P P R A 1 1 0 0 0 0 1 0 1 0 3 0 0 2 4 0 0 0 0 1 0 0 14 0 1631.9188 P26358;K7ENW7 P26358 1324 1337 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2;3 0.0015469 51.774 By MS/MS By MS/MS 3 2 0.50195 0.52273 4.6955 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47342 0.52273 3.3897 3 2 Median 0.58107 0.51076 7.0769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18201000 11970000 6231100 0 0 0 0 0 0 16912000 11187000 5724900 1289800 783570 506190 0 0 0 0 0 0 22028 2142 22981 116266;116267;116268;116269;116270 117216;117217;117218;117219;117220 117218 5 LPLHLYDTPGSTYNLQILTR ALIRKLIAVLESIERLPLHLYDTPGSTYNL YDTPGSTYNLQILTRRLRFRLERAPGETAL R L P T R R 0 1 1 1 0 1 0 1 1 1 5 0 0 0 2 1 3 0 2 0 0 0 20 0 2314.2321 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 982 1001 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 5.4328E-14 99.021 By MS/MS By MS/MS 1 3 0.75367 0.64921 3.2559 4 Median 0.69194 0.65441 NaN 1 0 Median 0.77554 0.64404 3.8468 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14082000 8168500 5913100 6086800 3576700 2510100 7994800 4591800 3403000 0 0 0 0 0 0 0 0 0 0 0 0 22029 137 22982 116271;116272;116273;116274 117221;117222;117223;117224 117222 4 LPLHTLTSSTPVVLVR CCKYQVEYDAYKLSRLPLHTLTSSTPVVLV PLHTLTSSTPVVLVRKDDLHRKRLHNTIAL R L P V R K 0 1 0 0 0 0 0 0 1 0 4 0 0 0 2 2 3 0 0 3 0 0 16 0 1732.0247 P17152 P17152 146 161 TMEM11 Transmembrane protein 11, mitochondrial yes yes 2;3 1.7556E-08 125.74 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.164 0.94549 22.527 7 Median 0.85194 0.82285 0.12895 2 0 Median 1.2156 1.0151 0.19799 2 0 Median NaN NaN NaN 0 0 Median 1.164 0.94549 NaN 1 0 Median 1.3655 1.4443 NaN 1 0 Median 0.91282 0.71731 NaN 1 0 Median 35962000 19209000 16753000 32086000 17235000 14850000 1446100 688820 757290 0 0 0 136420 68527 67895 1897800 1015300 882550 395850 201090 194760 22030 2037 22983 116275;116276;116277;116278;116279;116280;116281 117225;117226;117227;117228;117229;117230 117228 6 LPLISGFYK WVYSFSYELILQSTRLPLISGFYKLLSITV ILQSTRLPLISGFYKLLSITVRNAKKIKYF R L P Y K L 0 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 0 0 1 0 0 0 9 0 1036.5957 P78527 P78527 660 668 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 1.0319 0.94888 12.753 10 Median 0.9602 0.93994 0.95784 2 0 Median 1.125 0.98574 6.2072 2 0 Median 0.83332 0.90741 6.7009 2 0 Median 1.305 1.2211 1.8068 2 0 Median 0.83501 0.87633 NaN 1 0 Median 1.3029 1.1233 NaN 1 0 Median 94675000 49313000 45362000 22118000 11082000 11036000 8860400 4006200 4854200 55144000 30069000 25076000 3894000 1653900 2240100 4231200 2327600 1903600 426740 174510 252230 22031 2647 22984 116282;116283;116284;116285;116286;116287;116288;116289;116290;116291 117231;117232;117233;117234;117235;117236;117237;117238;117239;117240;117241;117242;117243;117244;117245;117246;117247;117248;117249 117239 19 LPLLGEKQEAK ELFKTQTFSGDFMHRLPLLGEKQEAKENGT FMHRLPLLGEKQEAKENGTNLTFIGDKTAM R L P A K E 1 0 0 0 0 1 2 1 0 0 3 2 0 0 1 0 0 0 0 0 0 0 11 1 1224.7078 Q8NBN3;H3BM87;H3BSZ0;H3BUZ1;H3BPJ4;H3BMU0 Q8NBN3 145 155 TMEM87A Transmembrane protein 87A yes no 3 0.063885 14.461 By MS/MS By matching By matching 1 1 1 0.935 0.88437 7.7983 3 Median 0.83923 0.88437 NaN 1 0 Median 1.0356 0.96985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.935 0.83056 NaN 1 0 Median 6308300 3143800 3164500 3932500 2072200 1860200 1674200 784530 889640 0 0 0 0 0 0 0 0 0 701640 287060 414580 22032 3408 22985 116292;116293;116294 117250 117250 1 LPLLPHEVR LDQMEDLYEDFHIVKLPLLPHEVRGADKVN DFHIVKLPLLPHEVRGADKVNTFSALLLEP K L P V R G 0 1 0 0 0 0 1 0 1 0 3 0 0 0 2 0 0 0 0 1 0 0 9 0 1072.6393 O43681;A0A087WXS7 O43681 318 326 ASNA1 ATPase ASNA1 yes no 2 0.0016555 79.116 By MS/MS 1 0.7504 0.74647 NaN 1 Median 0.7504 0.74647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8973500 5569100 3404300 8973500 5569100 3404300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22033 70 22986 116295 117251;117252 117252 2 LPLLPPESPGPLR EDDYSPRERRGGGLRLPLLPPESPGPLRQR LRLPLLPPESPGPLRQRHVACLARSERGLG R L P L R Q 0 1 0 0 0 0 1 1 0 0 4 0 0 0 5 1 0 0 0 0 0 0 13 0 1384.8078 A0A0G2JNZ2;A0A0G2JPP5;Q14160;A0A0G2JMS7 A0A0G2JNZ2 846 858 SCRIB Protein scribble homolog yes no 2 0.035335 61.65 By MS/MS By matching 1 2 0.51893 0.47108 7.575 3 Median 0.46923 0.47108 NaN 1 0 Median 0.54506 0.47112 10.713 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2930200 1842300 1087900 1730600 1131200 599300 1199600 711030 488580 0 0 0 0 0 0 0 0 0 0 0 0 22034 283 22987 116296;116297;116298 117253 117253 0 LPLNFLSGEK EEAWTKYPRGLVPRRLPLNFLSGEKFKECL LVPRRLPLNFLSGEKFKECLDKFLRMNFSK R L P E K F 0 0 1 0 0 0 1 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 10 0 1116.6179 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 296 305 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.014222 39.022 By MS/MS By matching 1 1 1.1518 1.1299 5.9113 2 Median 1.0961 1.0837 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2102 1.1782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3575200 1619500 1955700 3211500 1455100 1756400 0 0 0 363690 164430 199260 0 0 0 0 0 0 0 0 0 22035 213 22988 116299;116300 117254;117255 117255 2 LPLPEPWR RIQCVPKEPHSFQSRLPLPEPWRGLRDEAL PHSFQSRLPLPEPWRGLRDEALDQVSGIPG R L P W R G 0 1 0 0 0 0 1 0 0 0 2 0 0 0 3 0 0 1 0 0 0 0 8 0 1006.56 Q9HB07;F8VQQ3;F8VR84;H3BPH3 Q9HB07 317 324 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 0.0029868 102.72 By MS/MS By matching By matching 3 3 1 0.75742 0.66802 16.509 7 Median 0.65308 0.65166 16.183 3 0 Median 0.76272 0.66802 20.267 3 0 Median NaN NaN NaN 0 0 Median 0.82187 0.70081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17785000 10475000 7310200 16619000 9841200 6777600 1101700 599680 501990 0 0 0 64632 34052 30580 0 0 0 0 0 0 22036 4014 22989 116301;116302;116303;116304;116305;116306;116307 117256;117257 117256 2 LPLPSPALEYTLGSR VSGQDRYDRATSSGRLPLPSPALEYTLGSR LPLPSPALEYTLGSRLANGLGREEAVAEGA R L P S R L 1 1 0 0 0 0 1 1 0 0 4 0 0 0 3 2 1 0 1 0 0 0 15 0 1612.8825 Q8IU81 Q8IU81 121 135 IRF2BP1 Interferon regulatory factor 2-binding protein 1 yes yes 2 0.00029892 68.069 By matching By MS/MS By matching 1 1 1 0.55384 0.47469 49.261 3 Median 0.26427 0.25187 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63098 0.66451 NaN 1 0 Median 0.55384 0.47469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6177300 3923600 2253700 1817800 1370600 447210 0 0 0 4099500 2387300 1712200 259960 165730 94239 0 0 0 0 0 0 22037 3310 22990 116308;116309;116310 117258;117259 117258 2 LPLPYGFSAMQGWR PNTVKCSGDGVGAPRLPLPYGFSAMQGWRV RLPLPYGFSAMQGWRVSMEDAHNCIPELDS R L P W R V 1 1 0 0 0 1 0 2 0 0 2 0 1 1 2 1 0 1 1 0 0 0 14 0 1621.8075 O15355 O15355 23 36 PPM1G Protein phosphatase 1G yes yes 2 0.0026176 42.001 By MS/MS By MS/MS By MS/MS 1 1 1 0.84917 0.75404 12.207 3 Median 0.78573 0.75404 NaN 1 0 Median 0.84917 0.73593 NaN 1 0 Median 0.86542 0.91936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12974000 7110500 5863700 7452700 4103200 3349500 2465800 1378100 1087700 3055800 1629200 1426600 0 0 0 0 0 0 0 0 0 22038 1538 22991 116311;116312;116313 117260;117261;117262;117263;117264 117261 5 LPLQDVYK DCILPPTRPTDKPLRLPLQDVYKIGGIGTV PTDKPLRLPLQDVYKIGGIGTVPVGRVETG R L P Y K I 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 974.54368 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639 P68104 248 255 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 0.0004395 109.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 11 9 13 3 6 0.94751 0.84842 26.584 48 Median 0.98015 0.91419 27.476 9 3 Median 0.95281 0.80991 17.726 8 1 Median 1.0214 0.96759 10.111 9 3 Plateau 0.8971 0.7681 24.438 13 5 Median 1.1639 1.1205 3.7119 3 1 Plateau 0.92469 0.75857 42.737 6 1 Median 8606600000 4291800000 4314800000 1244100000 636710000 607350000 1082800000 513670000 569100000 1815200000 886160000 929050000 4270400000 2157100000 2113200000 63088000 29788000 33301000 131100000 68352000 62748000 22039 2632;404 22992 116314;116315;116316;116317;116318;116319;116320;116321;116322;116323;116324;116325;116326;116327;116328;116329;116330;116331;116332;116333;116334;116335;116336;116337;116338;116339;116340;116341;116342;116343;116344;116345;116346;116347;116348;116349;116350;116351;116352;116353;116354;116355;116356;116357;116358;116359;116360;116361;116362;116363;116364 117265;117266;117267;117268;117269;117270;117271;117272;117273;117274;117275;117276;117277;117278;117279;117280;117281;117282;117283;117284;117285;117286;117287;117288;117289;117290;117291;117292;117293;117294;117295;117296;117297;117298;117299;117300;117301;117302;117303;117304;117305;117306;117307;117308;117309;117310;117311;117312;117313;117314;117315;117316;117317;117318;117319;117320;117321;117322;117323;117324;117325;117326;117327;117328;117329;117330;117331;117332;117333;117334;117335;117336;117337;117338;117339;117340;117341;117342;117343;117344;117345;117346;117347;117348;117349;117350;117351;117352;117353;117354;117355;117356;117357;117358;117359;117360;117361;117362;117363;117364;117365;117366;117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379 117275 115 LPLQDVYKIGGIGTVPVGR DCILPPTRPTDKPLRLPLQDVYKIGGIGTV DVYKIGGIGTVPVGRVETGVLKPGMVVTFA R L P G R V 0 1 0 1 0 1 0 4 0 2 2 1 0 0 2 0 1 0 1 3 0 0 19 1 1981.136 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 248 266 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 3 2.0151E-08 79.97 By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 0.88711 0.87535 15.393 6 Median 0.6092 0.62483 NaN 1 0 Median 0.9026 0.85235 11.236 2 0 Median 0.88761 0.89958 NaN 1 0 Median 0.933 0.89689 7.2983 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18556000 10264000 8291300 3117500 1992400 1125100 2422100 1299200 1122900 8215800 4423400 3792400 4800200 2549300 2250900 0 0 0 0 0 0 22040 2632;404 22993 116365;116366;116367;116368;116369;116370 117380;117381;117382;117383 117381 3 LPLQLDDAVRPEAEGEEEGR LHVQKIYVISLAEPRLPLQLDDAVRPEAEG DDAVRPEAEGEEEGRATVNQDTRLDNRVID R L P G R A 2 2 0 2 0 1 5 2 0 0 3 0 0 0 2 0 0 0 0 1 0 0 20 1 2222.0815 P14868;C9J7S3;C9JLC1 P14868 152 171 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 5.3174E-14 100.92 By MS/MS By matching By MS/MS By MS/MS 4 2 1 1 0.8057 0.79065 6.695 8 Median 0.7819 0.80905 5.4469 4 0 Median 0.86 0.79065 0.28721 2 0 Median 0.63664 0.68761 NaN 1 0 Median 0.86694 0.79765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66509000 36805000 29704000 38954000 21596000 17358000 6117700 3080500 3037200 16990000 9692600 7297800 4446800 2436400 2010400 0 0 0 0 0 0 22041 2012 22994 116371;116372;116373;116374;116375;116376;116377;116378 117384;117385;117386;117387;117388;117389;117390;117391 117385 8 LPLSDVAVK AQSPDIEHLNEVSLKLPLSDVAVKTLQNMN NEVSLKLPLSDVAVKTLQNMNRQWIRATAT K L P V K T 1 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 9 0 940.55933 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5558 5566 SYNE2 Nesprin-2 yes no 2 0.017009 42.109 By matching By matching By matching By matching By MS/MS 1 1 1 1 1 1.0325 0.89189 14.756 5 Median 1.1424 1.071 NaN 1 0 Median 1.0325 0.89189 NaN 1 0 Median 0.69712 0.75423 NaN 1 0 Median 1.1153 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0052 0.86155 NaN 1 0 Median 14505000 7128600 7376300 6957800 3288400 3669300 1576400 830060 746300 3681900 1962900 1719000 1160300 494290 666020 0 0 0 1128600 552920 575640 22042 3521 22995 116379;116380;116381;116382;116383 117392 117392 1 LPLTPVFEGLAFK AGLFDTAISLCQTFKLPLTPVFEGLAFKCI FKLPLTPVFEGLAFKCIKLQFGGEAAQAEA K L P F K C 1 0 0 0 0 0 1 1 0 0 3 1 0 2 2 0 1 0 0 1 0 0 13 0 1430.8173 Q12769;G3V198 Q12769 1237 1249 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.00047284 72.643 By matching By MS/MS 2 1 0.7466 0.80973 17.901 3 Median 0.70724 0.69575 22.078 2 0 Median NaN NaN NaN 0 0 Median 0.7466 0.80973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5180500 2933200 2247300 660160 360440 299720 0 0 0 4520300 2572800 1947500 0 0 0 0 0 0 0 0 0 22043 2756 22996 116384;116385;116386 117393;117394;117395 117395 3 LPLVTPHTQCR GKKKKKTKGPDAASKLPLVTPHTQCRLKLL AASKLPLVTPHTQCRLKLLKLERIKDYLLM K L P C R L 0 1 0 0 1 1 0 0 1 0 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1320.6972 P62191 P62191 49 59 PSMC1 26S protease regulatory subunit 4 yes yes 3 0.017278 55.401 By MS/MS 1 0.89052 0.76839 NaN 1 Median NaN NaN NaN 0 0 Median 0.89052 0.76839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2083100 1016800 1066300 0 0 0 2083100 1016800 1066300 0 0 0 0 0 0 0 0 0 0 0 0 22044 2571 22997 116387 117396 117396 0 LPMLYPEVIQQVSAPVVTSTTQEKPK QVFAGMGGLALIAERLPMLYPEVIQQVSAP VSAPVVTSTTQEKPKDSDQFEWVTIEQSGE R L P P K D 1 0 0 0 0 3 2 0 0 1 2 2 1 0 4 2 3 0 1 4 0 0 26 1 2882.5463 Q9NR09 Q9NR09 4087 4112 BIRC6 Baculoviral IAP repeat-containing protein 6 yes yes 3 0.012569 17.647 By MS/MS 1 0.48077 0.51948 NaN 1 Median 0.48077 0.51948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1319900 830890 489010 1319900 830890 489010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22045 4073 22998 116388 117397 117397 1 LPMPEDYAMDELR PQRVPLRLLAPHIGRLPMPEDYAMDELRSL GRLPMPEDYAMDELRSLTQSYLRELAVGSL R L P L R S 1 1 0 2 0 0 2 0 0 0 2 0 2 0 2 0 0 0 1 0 0 0 13 0 1578.7058 P52948;H7C3P6 P52948 1790 1802 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 2.7171E-05 93.058 By matching By matching By MS/MS By matching 1 1 2 1 0.90941 0.91819 47.675 5 Median 1.2518 1.2624 NaN 1 0 Median 0.90941 0.80747 NaN 1 0 Median 0.53371 0.58871 70.282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0843 0.91819 NaN 1 0 Median 8504100 4293400 4210700 1074700 407920 666750 158140 88267 69870 7189500 3764000 3425500 0 0 0 0 0 0 81752 33199 48553 22046 2462 22999 116389;116390;116391;116392;116393 117398;117399 117398 2 LPNFGFVVFDDSEPVQK SYGNVVELRINSGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL K L P Q K V 0 0 1 2 0 1 1 1 0 0 1 1 0 3 2 1 0 0 0 3 0 0 17 0 1936.9571 Q13283 Q13283 377 393 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 1.5383E-07 95.401 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 0.80984 0.72981 25.204 8 Median 1.0456 1.0033 40.805 2 0 Median 0.81041 0.69464 17.908 3 0 Median 0.80927 0.78635 NaN 1 0 Median 0.80552 0.69911 1.8765 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26003000 13830000 12173000 9026500 4784700 4241800 4139700 2240200 1899400 11698000 6179000 5518900 1139100 626490 512630 0 0 0 0 0 0 22047 2803 23000 116394;116395;116396;116397;116398;116399;116400;116401 117400;117401;117402;117403;117404;117405;117406 117400 7 LPNFGFVVFDDSEPVQR NVVELRINTKGVGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQRILIAKPIMFRGEVRL K L P Q R I 0 1 1 2 0 1 1 1 0 0 1 0 0 3 2 1 0 0 0 3 0 0 17 0 1964.9632 Q9UN86 Q9UN86 371 387 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 0.0058571 28.806 By matching By MS/MS By matching 1 1 1 0.97635 0.88857 17.448 3 Median NaN NaN NaN 0 0 Median 0.82301 0.72047 NaN 1 0 Median 0.97635 1.0187 NaN 1 0 Median 1.0054 0.88857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4225500 1906200 2319400 0 0 0 730000 367560 362450 3406900 1500200 1906700 88592 38349 50244 0 0 0 0 0 0 22048 4341 23001 116402;116403;116404 117407;117408 117407 2 LPNFLSVEPR PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ LYFVKLPNFLSVEPRPFDPQYYEDEFEDEE K L P P R P 0 1 1 0 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 10 0 1170.6397 Q8WVC0 Q8WVC0 378 387 LEO1 RNA polymerase-associated protein LEO1 yes yes 2 0.0046436 52.482 By MS/MS By matching 1 2 0.74602 0.73891 7.3159 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69061 0.73891 NaN 1 0 Median 0.79845 0.69093 8.7743 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5434000 3245400 2188600 0 0 0 0 0 0 4225800 2583600 1642200 1208200 661750 546410 0 0 0 0 0 0 22049 3500 23002 116405;116406;116407 117409;117410 117409 2 LPNGLVIASLENYSPVSR PAGAPPQPQDLEFTKLPNGLVIASLENYSP GLVIASLENYSPVSRIGLFIKAGSRYEDFS K L P S R I 1 1 2 0 0 0 1 1 0 1 3 0 0 0 2 3 0 0 1 2 0 0 18 0 1928.0367 P22695;H3BRG4;H3BSJ9;H3BP04;H3BUE4;H3BUI9 P22695 43 60 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 1.029E-05 54.343 By MS/MS By MS/MS By MS/MS 2 2 2 0.8032 0.80355 13.782 6 Median 0.8032 0.80355 3.2982 2 0 Median 1.1121 0.97083 2.4138 2 0 Median 0.71456 0.72264 6.1935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10448000 5574000 4873600 5913700 3098200 2815500 2548200 1282900 1265200 1985700 1192800 792870 0 0 0 0 0 0 0 0 0 22050 2105 23003 116408;116409;116410;116411;116412;116413 117411;117412;117413;117414;117415;117416 117415 6 LPNLTHLNLSGNK SENRIFGGLDMLAEKLPNLTHLNLSGNKLK EKLPNLTHLNLSGNKLKDISTLEPLKKLEC K L P N K L 0 0 3 0 0 0 0 1 1 0 4 1 0 0 1 1 1 0 0 0 0 0 13 0 1419.7834 Q92688 Q92688 87 99 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2;3 2.6895E-06 107.11 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 2 1.0107 0.84919 32.779 16 Median 0.69164 0.64261 27.294 6 2 Median 1.055 0.89365 23.494 4 0 Median 1.0699 1.0132 22.619 4 0 Median 1.0687 0.89594 6.6733 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 233470000 126510000 106960000 169640000 95968000 73670000 8487700 3796600 4691100 49181000 23927000 25254000 6163400 2817200 3346200 0 0 0 0 0 0 22051 3549 23004 116414;116415;116416;116417;116418;116419;116420;116421;116422;116423;116424;116425;116426;116427;116428;116429 117417;117418;117419;117420;117421;117422;117423;117424;117425;117426;117427;117428;117429;117430 117423 14 LPNNHIGISFIPR IKAPSGRDEPCLLKRLPNNHIGISFIPREV KRLPNNHIGISFIPREVGEHLVSIKKNGNH R L P P R E 0 1 2 0 0 0 0 1 1 3 1 0 0 1 2 1 0 0 0 0 0 0 13 0 1476.8201 O75369;E7EN95 O75369 1957 1969 FLNB Filamin-B yes no 2;3 2.067E-05 94.363 By MS/MS By MS/MS By MS/MS 4 3 1 0.93484 0.85363 29.132 8 Median 0.79869 0.76165 17.6 4 2 Median 1.0346 0.91415 22.212 3 1 Median 1.4246 1.5567 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159160000 80790000 78374000 89091000 45764000 43327000 60181000 30457000 29724000 9891400 4569200 5322200 0 0 0 0 0 0 0 0 0 22052 1664 23005 116430;116431;116432;116433;116434;116435;116436;116437 117431;117432;117433;117434;117435;117436;117437;117438;117439 117435 9 LPNQTHPDVPVGDESQAR REAQLEEQFYLQALKLPNQTHPDVPVGDES QTHPDVPVGDESQARVLHMVGDKPVFSFQP K L P A R V 1 1 1 2 0 2 1 1 1 0 1 0 0 0 3 1 1 0 0 2 0 0 18 0 1958.9446 M0QWZ7;M0R2C6;Q9NP81;B4DJM9 M0QWZ7 170 187 SARS2 Serine--tRNA ligase, mitochondrial yes no 3 0.00060898 33.667 By MS/MS By MS/MS By MS/MS 1 1 1 0.66855 0.69654 12.374 3 Median 0.57491 0.57358 NaN 1 0 Median 0.84842 0.72187 NaN 1 1 Median 0.66855 0.69654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10462000 5754000 4707600 2859200 1747200 1112000 4020000 2003700 2016300 3582400 2003100 1579400 0 0 0 0 0 0 0 0 0 22053 1407 23006 116438;116439;116440 117440;117441;117442;117443 117440 4 LPNYDAR LINGAEGIGTGWACKLPNYDAREIVNNVRR IGTGWACKLPNYDAREIVNNVRRMLDGLDP K L P A R E 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 847.41882 Q02880;E9PCY5 Q02880 885 891 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.034356 47.849 By MS/MS 1 0.67265 0.74654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67265 0.74654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1954300 1233700 720550 0 0 0 0 0 0 1954300 1233700 720550 0 0 0 0 0 0 0 0 0 22054 2704 23007 116441 117444;117445 117445 2 LPPDVLR LPAELPAKRVRGKARLPPDVLRWVELAKLY KRVRGKARLPPDVLRWVELAKLYRSIGEYD R L P L R W 0 1 0 1 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 7 0 808.48069 P78527 P78527 2916 2922 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.003648 103.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 0.71949 0.76933 13.701 7 Median 0.71949 0.70411 NaN 1 0 Median 1.0255 0.86082 5.7431 2 0 Median 0.67156 0.7236 8.6674 2 1 Median 1.092 0.95155 NaN 1 0 Median 0.65234 0.6745 NaN 1 1 Median NaN NaN NaN 0 0 Median 80765000 41195000 39570000 12318000 6860800 5457200 31714000 14608000 17105000 23590000 13475000 10116000 5280400 2482800 2797500 7862200 3768600 4093600 0 0 0 22055 2647 23008 116442;116443;116444;116445;116446;116447;116448 117446;117447;117448;117449;117450;117451;117452;117453;117454;117455;117456;117457;117458;117459;117460;117461;117462;117463;117464;117465;117466 117451 21 LPPEEASPYVVDHGESGPLR QAQVPLAAVIKPLARLPPEEASPYVVDHGE ASPYVVDHGESGPLRCNRCKAYMCPFMQFI R L P L R C 1 1 0 1 0 0 3 2 1 0 2 0 0 0 4 2 0 0 1 2 0 0 20 0 2148.0487 P53992;G5EA31 P53992 405 424 SEC24C Protein transport protein Sec24C yes no 3 9.5493E-08 58.997 By MS/MS By MS/MS 1 2 0.51961 0.50138 9.4081 3 Median 0.51961 0.50138 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.48764 0.52846 12.592 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19645000 12372000 7272300 7998000 5061400 2936600 0 0 0 11647000 7311100 4335700 0 0 0 0 0 0 0 0 0 22056 1134 23009 116449;116450;116451 117467;117468;117469 117468 3 LPPEVNR ______________________________ AAKRANIRLPPEVNRILYIRNLPYKITAEE R L P N R I 0 1 1 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 7 0 823.4552 Q9Y3B4 Q9Y3B4 13 19 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.025249 54.525 By MS/MS By matching By matching 1 1 1 0.76239 0.69932 9.0453 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67529 0.68362 NaN 1 0 Median 0.88557 0.69932 NaN 1 0 Median 0.76239 0.8077 NaN 1 0 Median NaN NaN NaN 0 0 Median 6465000 3495500 2969500 0 0 0 0 0 0 3013600 1677700 1335900 714460 366930 347530 2736900 1450900 1286000 0 0 0 22057 4415 23010 116452;116453;116454 117470;117471 117470 2 LPPGFSASSTVEKPSK QPLARPNTLTLVHVRLPPGFSASSTVEKPS PPGFSASSTVEKPSKVHRALYSKGILLMAA R L P S K V 1 0 0 0 0 0 1 1 0 0 1 2 0 1 3 4 1 0 0 1 0 0 16 1 1630.8566 O75694;E9PF10 O75694 392 407 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 4.0391E-05 65.716 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.77235 0.73881 16.015 5 Median 0.77235 0.80942 NaN 1 0 Median 0.8854 0.81963 NaN 1 1 Median 0.55205 0.63862 20.611 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77334 0.69811 NaN 1 0 Median 57263000 34163000 23100000 10324000 7629900 2694100 14047000 6929800 7117600 30955000 18441000 12515000 0 0 0 0 0 0 1935600 1162000 773660 22058 1692 23011 116455;116456;116457;116458;116459 117472;117473;117474;117475;117476;117477;117478;117479 117474 8 LPPHGYPLEHPFNK TTKKARSDPLFSAQRLPPHGYPLEHPFNKD RLPPHGYPLEHPFNKDGYRYILAEPDPHAP R L P N K D 0 0 1 0 0 0 1 1 2 0 2 1 0 1 4 0 0 0 1 0 0 0 14 0 1644.8413 F5H8F7;Q9UBL3 F5H8F7 186 199 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 4 0.051096 12.833 By MS/MS 2 0.59788 0.62425 18.504 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59788 0.62425 18.504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6372900 3964600 2408300 0 0 0 0 0 0 6372900 3964600 2408300 0 0 0 0 0 0 0 0 0 22059 1048 23012 116460;116461 117480 117480 1 LPPKVESLESLYFTPIPAR GTSVPGEPASPISQRLPPKVESLESLYFTP VESLESLYFTPIPARSQAPLESSLDSLGDV R L P A R S 1 1 0 0 0 0 2 0 0 1 3 1 0 1 4 2 1 0 1 1 0 0 19 1 2156.1881 A0A087WY61;Q14980 Q14980 1763 1781 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 2.2406E-18 127.61 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 0.60965 0.59363 19.284 6 Median 0.88118 0.90192 NaN 1 0 Median 0.64733 0.6163 NaN 1 0 Median 0.45833 0.5492 5.7002 2 0 Median 0.61346 0.59223 9.3625 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64009000 44195000 19814000 1419200 744880 674300 2356000 1402800 953200 59417000 41592000 17825000 816280 454920 361350 0 0 0 0 0 0 22060 2905;77 23013 116462;116463;116464;116465;116466;116467 117481;117482;117483;117484;117485;117486;117487;117488;117489;117490;117491;117492;117493 117482 13 LPPLPAVER SKKNAAIAVLEELKKLPPLPAVERVKPRIK LEELKKLPPLPAVERVKPRIKKKTKPIVKP K L P E R V 1 1 0 0 0 0 1 0 0 0 2 0 0 0 3 0 0 0 0 1 0 0 9 0 990.58622 O95793;A0A087X1A5;Q5JW30;Q5JW28 O95793 252 260 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 0.010817 47.869 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.65004 0.63595 37.739 5 Median 0.65004 0.63595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63831 0.55652 NaN 1 0 Median 1.3489 1.3576 NaN 1 0 Median 0.70422 0.6018 15.363 2 0 Median 10628000 5543900 5083600 4291000 2347600 1943400 0 0 0 0 0 0 434350 251250 183100 3270000 1448900 1821000 2632200 1496200 1136000 22061 1794 23014 116468;116469;116470;116471;116472 117494;117495 117494 2 LPPLPPREDAAR GRGGRDHGDWDEASRLPPLPPREDAARVAR ASRLPPLPPREDAARVARFVTHVSDWGALA R L P A R V 2 2 0 1 0 0 1 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 12 1 1330.7357 A0A3B3IRL2;O75629 A0A3B3IRL2 46 57 CREG1 Protein CREG1 yes no 3 0.00095468 47.288 By MS/MS By MS/MS 1 1 0.59617 0.56803 14.606 2 Median 0.47925 0.51229 NaN 1 1 Median 0.74162 0.62983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6145300 3529600 2615700 2515300 1516300 998960 3630000 2013300 1616700 0 0 0 0 0 0 0 0 0 0 0 0 22062 412 23015 116473;116474 117496;117497 117497 2 LPPLYGDNLDQHFR LWGQPAVPLPDVELRLPPLYGDNLDQHFRL RLPPLYGDNLDQHFRLLAQKQSLPYLEAAN R L P F R L 0 1 1 2 0 1 0 1 1 0 3 0 0 1 2 0 0 0 1 0 0 0 14 0 1683.8369 P54098;A0A1B0GTQ6;A0A0D9SFM1;A0A590UJP1 P54098 127 140 POLG DNA polymerase subunit gamma-1 yes no 3 0.0032963 32.734 By matching By MS/MS 1 1 1.0629 1.1885 48.324 2 Median 1.4715 1.6726 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76776 0.84447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8130900 5062600 3068300 2263600 1159500 1104100 0 0 0 5867300 3903100 1964300 0 0 0 0 0 0 0 0 0 22063 2479 23016 116475;116476 117498 117498 1 LPPNTNDEVDEDPTGNK TVAGADKFGNICVVRLPPNTNDEVDEDPTG PNTNDEVDEDPTGNKALWDRGLLNGASQKA R L P N K A 0 0 3 3 0 0 2 1 0 0 1 1 0 0 3 0 2 0 0 1 0 0 17 0 1853.8279 Q15393 Q15393 1058 1074 SF3B3 Splicing factor 3B subunit 3 yes yes 2 8.6263E-19 178.15 By MS/MS By MS/MS By MS/MS 1 2 3 0.67683 0.59871 7.2958 6 Median NaN NaN NaN 0 0 Median 0.69095 0.61029 NaN 1 0 Median 0.53361 0.5835 0.92574 2 0 Median 0.71124 0.64392 9.96 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27265000 16371000 10894000 0 0 0 10290000 5759900 4530000 11572000 7452000 4119600 5403300 3159100 2244200 0 0 0 0 0 0 22064 2946 23017 116477;116478;116479;116480;116481;116482 117499;117500;117501;117502;117503;117504;117505;117506;117507;117508;117509;117510;117511;117512;117513;117514;117515;117516;117517;117518;117519;117520;117521;117522;117523;117524;117525;117526;117527 117512 29 LPPNVVEESAR LCPSGAKVSESLSLKLPPNVVEESARASFS LSLKLPPNVVEESARASFSVLGDILGSAMR K L P A R A 1 1 1 0 0 0 2 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 11 0 1209.6354 CON__ENSEMBL:ENSBTAP00000024146;P01023 CON__ENSEMBL:ENSBTAP00000024146 939 949 A2M Alpha-2-macroglobulin yes no 2 0.0062922 64.297 By MS/MS By MS/MS 2 4 0.12662 0.10728 48.289 4 Median NaN NaN NaN 0 0 Median 0.12662 0.10728 48.289 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11507000 10691000 816130 0 0 0 11507000 10691000 816130 0 0 0 0 0 0 0 0 0 0 0 0 + 22065 734 23018 116483;116484;116485;116486;116487;116488 117528;117529;117530;117531;117532;117533 117530 6 LPPPPDIK NNWQPERQVPFNEVRLPPPPDIKKEISEGD VPFNEVRLPPPPDIKKEISEGDEVEVYSRA R L P I K K 0 0 0 1 0 0 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 8 0 875.51165 B4DXZ6;P51114;C9JAJ4 B4DXZ6 36 43 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2 0.038682 37.159 By MS/MS 1 0.64592 0.55341 NaN 1 Median NaN NaN NaN 0 0 Median 0.64592 0.55341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3651700 2145400 1506300 0 0 0 3651700 2145400 1506300 0 0 0 0 0 0 0 0 0 0 0 0 22066 608 23019 116489 117534;117535 117534 2 LPPPPPPPLPR LGYRDYRLQQLALGRLPPPPPPPLPRDLER ALGRLPPPPPPPLPRDLERERDYPFYERVR R L P P R D 0 1 0 0 0 0 0 0 0 0 2 0 0 0 8 0 0 0 0 0 0 0 11 0 1176.7019 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 271 281 RBM15 Putative RNA-binding protein 15 yes no 2 1.3854E-26 166.17 By MS/MS 1 0.23756 0.25244 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23756 0.25244 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8798100 7119900 1678200 0 0 0 0 0 0 8798100 7119900 1678200 0 0 0 0 0 0 0 0 0 22067 60 23020 116490 117536 117536 1 LPPQDFLDR QVHTLLSQDQAQAARLPPQDFLDRLSSLDN QAQAARLPPQDFLDRLSSLDNLKASVSQVE R L P D R L 0 1 0 2 0 1 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 9 0 1099.5662 Q07065 Q07065 524 532 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0052544 72.485 By MS/MS 3 0.81914 0.78361 NaN 1 Median 0.81914 0.78361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8635500 4331500 4304000 8635500 4331500 4304000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22068 2730 23021 116491;116492;116493 117537;117538;117539;117540;117541 117537 5 LPPVLAIQLK CNKKVDTVKRLLIKKLPPVLAIQLKRFDYD LLIKKLPPVLAIQLKRFDYDWERECAIKFN K L P L K R 1 0 0 0 0 1 0 0 0 1 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1090.7114 Q93008 Q93008 1789 1798 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.00073675 98.299 By MS/MS By MS/MS By matching 2 2 1 0.87595 0.77986 12.624 5 Median 0.71246 0.69674 3.5216 2 0 Median 0.92223 0.81745 6.6576 2 0 Median NaN NaN NaN 0 0 Median 1.0178 0.92334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30228000 16685000 13544000 9933000 5868000 4065000 20239000 10792000 9447200 0 0 0 56605 24926 31680 0 0 0 0 0 0 22069 3573 23022 116494;116495;116496;116497;116498 117542;117543 117543 2 LPPVLANLMGSMGAGK PGGSGGSPDGAGGSKLPPVLANLMGSMGAG PPVLANLMGSMGAGKGPQGPGGGGINVQEI K L P G K G 2 0 1 0 0 0 0 3 0 0 3 1 2 0 2 1 0 0 0 1 0 0 16 0 1554.8262 Q96QC0 Q96QC0 554 569 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 1.2397E-09 99.522 By matching By matching By MS/MS By matching By matching 1 1 2 2 1 0.70489 0.68552 10.72 7 Median 0.58222 0.59103 NaN 1 0 Median 0.63419 0.57288 NaN 1 0 Median 0.67333 0.72952 8.7981 2 0 Median 0.76066 0.6619 5.7936 2 0 Median NaN NaN NaN 0 0 Median 0.80999 0.71164 NaN 1 0 Median 6024600 3491900 2532700 252860 164360 88504 351220 202120 149100 4761200 2754500 2006700 592410 338940 253470 0 0 0 66910 31932 34977 22070 3718 23023 116499;116500;116501;116502;116503;116504;116505 117544;117545 117544 2 LPPYSAGDGAELSTPGGK ELLSSDMKKDFIMHRLPPYSAGDGAELSTP YSAGDGAELSTPGGKLPRLDSVVRLQFKDH R L P G K L 2 0 0 1 0 0 1 4 0 0 2 1 0 0 3 2 1 0 1 0 0 0 18 0 1715.8366 Q8IUF8 Q8IUF8 339 356 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.0043006 42.041 By MS/MS By matching 1 1 0.67087 0.61656 7.2829 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59599 0.58561 NaN 1 0 Median 0.75516 0.64914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7655400 4538400 3117000 0 0 0 0 0 0 5724300 3389100 2335200 1931100 1149300 781810 0 0 0 0 0 0 22071 3313 23024 116506;116507 117546 117546 0 LPQEPGREQVVEDRPVGGR TNEIQVVNEEPQRDRLPQEPGREQVVEDRP PGREQVVEDRPVGGRGFGGAGELGQTPQVQ R L P G R G 0 3 0 1 0 2 3 3 0 0 1 0 0 0 3 0 0 0 0 3 0 0 19 2 2117.0978 Q8NBJ4 Q8NBJ4 270 288 GOLM1 Golgi membrane protein 1 yes yes 4 0.0081143 23.329 By MS/MS 2 0.60741 0.63366 5.3993 2 Median 0.60741 0.63366 5.3993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6023200 3630600 2392600 6023200 3630600 2392600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22072 3403 23025 116508;116509 117547;117548 117548 2 LPQFGISTPGSDLHVNAK SLEASEGSIKLPKMKLPQFGISTPGSDLHV FGISTPGSDLHVNAKGPQVSGELKGPGVDV K L P A K G 1 0 1 1 0 1 0 2 1 1 2 1 0 1 2 2 1 0 0 1 0 0 18 0 1879.9792 Q09666 Q09666 5408 5425 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 5.4361E-05 44.391 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 2 1 0.89774 0.86047 18.262 8 Median 0.83199 0.83439 NaN 1 0 Median 0.96768 0.86211 3.0616 2 0 Median 0.96544 1.0536 25.846 2 0 Median 0.85958 0.76707 10.615 2 0 Median 1.0621 1.1114 NaN 1 0 Median NaN NaN NaN 0 0 Median 38935000 19037000 19898000 15348000 7677600 7670000 5351900 2685400 2666500 14969000 7069300 7899400 2181500 1143400 1038100 1085600 461650 623960 0 0 0 22073 2749 23026 116510;116511;116512;116513;116514;116515;116516;116517 117549;117550;117551;117552;117553 117549 5 LPQFHGVR FLINTASLLSVLLPKLPQFHGVRVFGINKY LSVLLPKLPQFHGVRVFGINKY________ K L P V R V 0 1 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 952.52428 Q53FV1;F8VXD5;F8VWV8 Q53FV1 139 146 ORMDL2 ORM1-like protein 2 yes no 2 0.053191 55.441 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22074 3029 23027 116518 117554 117554 1 LPQGLQYALNVPISVK ETVKNDEEQMETHERLPQGLQYALNVPISV PQGLQYALNVPISVKQEITFTDVSEQLMRD R L P V K Q 1 0 1 0 0 2 0 1 0 1 3 1 0 0 2 1 0 0 1 2 0 0 16 0 1738.9982 Q9UQR1 Q9UQR1 100 115 ZNF148 Zinc finger protein 148 yes yes 2 0.00090435 40.727 By MS/MS By matching By matching By matching 1 2 1 1 0.84571 0.75649 26.739 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70967 0.78362 NaN 1 0 Median 1.0342 0.90777 25.782 2 0 Median 0.50068 0.51469 NaN 1 0 Median 0.84571 0.71045 NaN 1 0 Median 6504200 3605600 2898600 0 0 0 0 0 0 4799800 2554600 2245200 236790 119570 117220 515280 361900 153380 952360 569570 382790 22075 4364 23028 116519;116520;116521;116522;116523 117555;117556 117555 2 LPQLPITNFSR KQTPKQRLLGWIQNKLPQLPITNFSRDWQS IQNKLPQLPITNFSRDWQSGRALGALVDSC K L P S R D 0 1 1 0 0 1 0 0 0 1 2 0 0 1 2 1 1 0 0 0 0 0 11 0 1284.719 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 180 190 FLNA Filamin-A no no 2 2.8944E-05 155.42 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 1 2 1 0.77799 0.70872 15.523 14 Median 0.81461 0.7877 8.6744 5 0 Median 0.76978 0.61495 10.959 5 0 Median 0.75144 0.81902 NaN 1 0 Median 0.80377 0.70473 2.468 2 0 Median NaN NaN NaN 0 0 Median 1.1299 0.92686 NaN 1 0 Median 320050000 176760000 143290000 158610000 85800000 72809000 141350000 79621000 61729000 17067000 9668500 7398200 2808900 1588200 1220700 0 0 0 218010 84073 133940 22076 2088;3120 23029 116524;116525;116526;116527;116528;116529;116530;116531;116532;116533;116534;116535;116536;116537;116538 117557;117558;117559;117560;117561;117562;117563;117564;117565;117566;117567;117568;117569;117570;117571;117572;117573;117574;117575;117576;117577;117578;117579;117580;117581;117582;117583;117584 117562 28 LPQMETEGMDEGKEPQK AIMRPNNLVHFTESKLPQMETEGMDEGKEP QMETEGMDEGKEPQKQLEGDCCSFITQLVN K L P Q K Q 0 0 0 1 0 2 4 2 0 0 1 2 2 0 2 0 1 0 0 0 0 0 17 1 1945.8761 Q5T4S7;A0A0A0MSW0 Q5T4S7 2596 2612 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 3.2255E-11 84.208 By MS/MS By MS/MS By matching 1 1 1 0.88026 0.92111 10.437 3 Median 0.84516 0.92111 NaN 1 0 Median 0.88026 0.84113 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1905 1.0358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23635000 12294000 11341000 7378800 4573900 2804900 15333000 7349500 7983900 0 0 0 923230 370710 552520 0 0 0 0 0 0 22077 3089 23030 116539;116540;116541 117585;117586 117586 2 LPQPPEGQCYSN LQELRRLMMSKENMKLPQPPEGQCYSN___ NMKLPQPPEGQCYSN_______________ K L P S N - 0 0 1 0 1 2 1 1 0 0 1 0 0 0 3 1 0 0 1 0 0 0 12 0 1388.6031 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3 Q13404 136 147 UBE2V1;TMEM189-UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 2 0.05125 43.512 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1642200 0 0 0 0 0 1642200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22078 2809 23031 116542 117587 117587 1 LPQPPEGQTYNN LQELRRLMMSKENMKLPQPPEGQTYNN___ NMKLPQPPEGQTYNN_______________ K L P N N - 0 0 2 0 0 2 1 1 0 0 1 0 0 0 3 0 1 0 1 0 0 0 12 0 1356.631 Q15819;G3V113;H0YBP9 Q15819 134 145 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes no 2 0.0047687 62.823 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18576000 0 0 18576000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22079 2973 23032 116543 117588 117588 1 LPQQDHTTTTDSEMEEPYLQESK GNLKKKYAQGFLPEKLPQQDHTTTTDSEME TTDSEMEEPYLQESKEEGAPLKLKCELCGR K L P S K E 0 0 0 2 0 3 4 0 1 0 2 1 1 0 2 2 4 0 1 0 0 0 23 0 2706.1967 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 610 632 PHC2 Polyhomeotic-like protein 2 yes no 3 2.8581E-24 108.4 By MS/MS By matching 2 1 0.64681 0.66757 11.005 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64417 0.66715 0.088284 2 0 Median 0.95955 0.80724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37727000 22084000 15643000 0 0 0 0 0 0 36875000 21668000 15207000 851510 415720 435790 0 0 0 0 0 0 22080 180 23033;23034 116544;116545;116546 117589;117590;117591;117592 117592 82 4 LPQQSHSAFGATSSSSGFGK FGGFAISAGKKEEPKLPQQSHSAFGATSSS HSAFGATSSSSGFGKSAPPQLPSFYKIGSK K L P G K S 2 0 0 0 0 2 0 3 1 0 1 1 0 2 1 6 1 0 0 0 0 0 20 0 1979.9337 Q86XP3;J3QRI2;J3KTK9 Q86XP3 31 50 DDX42 ATP-dependent RNA helicase DDX42 yes no 2;3 4.8189E-14 100.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 1 2 1 0.84485 0.90274 19.899 10 Median 0.82578 0.80079 NaN 1 0 Median 1.1853 1.0485 NaN 1 0 Median 0.79084 0.85061 14.099 4 0 Median 1.1095 0.98374 NaN 1 0 Median 0.89797 0.92089 44.914 2 0 Median 1.2233 1.0089 NaN 1 0 Median 117690000 61642000 56050000 8307900 4296500 4011400 2054500 991840 1062600 71049000 38321000 32728000 22295000 10972000 11323000 11809000 6197200 5611600 2177200 863320 1313900 22081 3302 23035 116547;116548;116549;116550;116551;116552;116553;116554;116555;116556 117593;117594;117595;117596;117597;117598;117599;117600;117601;117602;117603;117604;117605 117596 13 LPQSAGDLVR ______________________________ GRRVRLPQSAGDLVRAHPPLEERARLLRGQ R L P V R A 1 1 0 1 0 1 0 1 0 0 2 0 0 0 1 1 0 0 0 1 0 0 10 0 1054.5771 Q96AB6;H3BNJ5;H3BU50 Q96AB6 12 21 NTAN1 Protein N-terminal asparagine amidohydrolase yes no 2 0.011506 57.59 By MS/MS 1 1.0603 1.0137 NaN 1 Median 1.0603 1.0137 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3557200 1747000 1810200 3557200 1747000 1810200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22082 3598 23036 116557 117606 117606 1 LPQTEQELK TLKERKAAIRDIEGKLPQTEQELKEKEKEL RDIEGKLPQTEQELKEKEKELQKLTQEETN K L P L K E 0 0 0 0 0 2 2 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 9 0 1084.5764 Q9NTJ3;E9PD53 Q9NTJ3 548 556 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0071178 52.482 By MS/MS 1 1.4052 1.2472 NaN 1 Median NaN NaN NaN 0 0 Median 1.4052 1.2472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3869000 1519600 2349400 0 0 0 3869000 1519600 2349400 0 0 0 0 0 0 0 0 0 0 0 0 22083 4108 23037 116558 117607;117608 117607 2 LPQTGMKPLPVFQR KKTIAEIVSYQVELRLPQTGMKPLPVFQRT RLPQTGMKPLPVFQRTNQLLQDIKLLENVT R L P Q R T 0 1 0 0 0 2 0 1 0 0 2 1 1 1 3 0 1 0 0 1 0 0 14 1 1610.8967 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3956 3969 SYNE2 Nesprin-2 yes no 3 0.00097663 40.725 By MS/MS By matching By matching 1 1 1 1.0437 0.9722 49.084 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43202 0.50026 NaN 1 0 Median 1.0437 0.9722 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4975 1.304 NaN 1 0 Median 6830700 4119100 2711600 0 0 0 0 0 0 5744900 3629600 2115400 956630 430340 526300 0 0 0 129170 59205 69960 22084 3521 23038 116559;116560;116561 117609 117609 1755 1 LPQTSDDEKKDF IIDGVKVQVHTRRPKLPQTSDDEKKDF___ RPKLPQTSDDEKKDF_______________ K L P D F - 0 0 0 3 0 1 1 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 12 2 1421.6674 Q9GZT3 Q9GZT3 98 109 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes yes 3 0.0043974 35.737 By MS/MS By matching 1 1 1.5788 1.3463 13.258 2 Median NaN NaN NaN 0 0 Median 1.7056 1.4786 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4615 1.2258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4495400 1898800 2596600 0 0 0 4316400 1820100 2496400 0 0 0 178980 78716 100270 0 0 0 0 0 0 22085 3914 23039 116562;116563 117610 117610 1 LPQVAEEISGPLTSANK QLYQEAAQLDMLLEKLPQVAEEISGPLTSA QVAEEISGPLTSANKITLVSSGSGTMGAAK K L P N K I 2 0 1 0 0 1 2 1 0 1 2 1 0 0 2 2 1 0 0 1 0 0 17 0 1752.9258 O75955;A0A140T9R1;A0A140T9W4;A0A140T974 O75955 361 377 FLOT1 Flotillin-1 yes no 2 0.00029332 45.915 By matching By MS/MS 1 1 0.9196 0.86391 2.8837 2 Median NaN NaN NaN 0 0 Median 0.98741 0.8817 NaN 1 0 Median 0.85644 0.84647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4313200 2040100 2273100 0 0 0 436140 234260 201880 3877100 1805900 2071200 0 0 0 0 0 0 0 0 0 22086 1712 23040 116564;116565 117611;117612 117611 2 LPQYLER KLVEQLDIEETEQSKLPQYLERFKALHSKL IEETEQSKLPQYLERFKALHSKLQALGKIE K L P E R F 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 917.49707 G5EA06;Q92552;D6RH20 G5EA06 271 277 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.016334 68.915 By MS/MS 1 1.3248 1.1496 NaN 1 Median NaN NaN NaN 0 0 Median 1.3248 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4392600 1703700 2688900 0 0 0 4392600 1703700 2688900 0 0 0 0 0 0 0 0 0 0 0 0 22087 1131 23041 116566 117613;117614 117613 2 LPRPLTSSASAIR LARSTRPQAWVPREKLPRPLTSSASAIRKL EKLPRPLTSSASAIRKLMRKAELMGISTDI K L P I R K 2 2 0 0 0 0 0 0 0 1 2 0 0 0 2 3 1 0 0 0 0 0 13 1 1367.7885 B4DG57;A0A0U1RRH6;O94880 B4DG57 280 292 PHF14 PHD finger protein 14 yes no 3 0.049928 29.013 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22088 309 23042 116567 117615 117615 1 LPRPPPPEMPESLK ALQWFIYDSVKVYFRLPRPPPPEMPESLKK RLPRPPPPEMPESLKKKLGLTQ________ R L P L K K 0 1 0 0 0 0 2 0 0 0 2 1 1 0 6 1 0 0 0 0 0 0 14 1 1586.849 Q00325;F8VVM2 Q00325 342 355 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2;3 9.697E-07 95.981 By MS/MS By MS/MS By matching 3 4 1 0.67402 0.61949 19.121 7 Median 0.44868 0.46192 24.618 2 1 Median 0.69445 0.64642 3.268 4 3 Median 0.48334 0.52554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151010000 95860000 55149000 63717000 44271000 19446000 81004000 47269000 33734000 6287800 4319800 1968100 0 0 0 0 0 0 0 0 0 22089 2674 23043 116568;116569;116570;116571;116572;116573;116574;116575 117616;117617;117618;117619;117620;117621;117622;117623;117624;117625;117626;117627;117628;117629 117619 14 LPSDVVTAVR NADKLGIILRNELMKLPSDVVTAVRGKGLL NELMKLPSDVVTAVRGKGLLNAIVIKETKD K L P V R G 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 3 0 0 10 0 1055.5975 P04181 P04181 363 372 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.00035174 83.948 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 2 1 1 1.5 1.3967 152.11 10 Median 1.271 1.2624 14.218 3 1 Median 1.5894 1.3811 287.16 3 2 Median 1.4393 1.4928 7.8184 2 0 Median 1.5544 1.3383 NaN 1 0 Median 2.7403 2.6801 NaN 1 0 Median NaN NaN NaN 0 0 Median 340760000 125980000 214780000 136730000 63452000 73276000 165810000 45264000 120550000 22033000 11011000 11022000 14783000 5832200 8951100 1402800 420640 982140 0 0 0 22090 1846 23044 116576;116577;116578;116579;116580;116581;116582;116583;116584;116585;116586 117630;117631;117632;117633;117634;117635;117636;117637;117638;117639;117640;117641 117634 12 LPSFELLHK CAIGLWTDISARILKLPSFELLHKEMLGGE SARILKLPSFELLHKEMLGGEIIPRSILMT K L P H K E 0 0 0 0 0 0 1 0 1 0 3 1 0 1 1 1 0 0 0 0 0 0 9 0 1082.6124 Q16531;F5GY55 Q16531 571 579 DDB1 DNA damage-binding protein 1 yes no 2 0.00067245 105.57 By matching By MS/MS By MS/MS 1 1 2 1.0264 0.92524 23.483 4 Median NaN NaN NaN 0 0 Median 0.99236 0.87051 NaN 1 0 Median 0.68393 0.75033 NaN 1 0 Median 1.2616 1.1331 20.044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22541000 11179000 11362000 0 0 0 7349200 3665700 3683400 7171700 4299700 2872000 8020000 3213900 4806200 0 0 0 0 0 0 22091 2985 23045 116587;116588;116589;116590 117642;117643;117644 117643 3 LPSGQYLQR HKLLAQGLIKGQTFRLPSGQYLQREEVDLT KGQTFRLPSGQYLQREEVDLTGSVPVHAKT R L P Q R E 0 1 0 0 0 2 0 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 9 0 1060.5665 E9PHM2;Q15031 E9PHM2 563 571 LARS2 Probable leucine--tRNA ligase, mitochondrial yes no 2 0.003417 65.252 By MS/MS 1 1.2714 1.1017 NaN 1 Median NaN NaN NaN 0 0 Median 1.2714 1.1017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3239900 1347000 1893000 0 0 0 3239900 1347000 1893000 0 0 0 0 0 0 0 0 0 0 0 0 22092 933 23046 116591 117645;117646 117646 2 LPSGSGAASPTGSAVDIR SNVDVETQSGKTVIRLPSGSGAASPTGSAV GSGAASPTGSAVDIRAGAISASGPELQGAG R L P I R A 3 1 0 1 0 0 0 3 0 1 1 0 0 0 2 4 1 0 0 1 0 0 18 0 1641.8322 Q09666 Q09666 208 225 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.683E-16 169.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 7 1 3 0.7654 0.68141 18.538 18 Median 0.72046 0.6985 19.348 3 0 Plateau 0.81042 0.668 11.611 2 1 Median 0.86724 0.92597 3.989 2 0 Median 0.79017 0.67085 15.001 7 0 Median 0.68489 0.70859 NaN 1 0 Median 0.7463 0.62091 22.567 3 2 Median 189190000 102510000 86683000 47731000 27952000 19779000 27406000 13578000 13828000 57729000 30399000 27330000 43614000 23477000 20137000 7679700 4208400 3471400 5031500 2894100 2137300 22093 2749 23047 116592;116593;116594;116595;116596;116597;116598;116599;116600;116601;116602;116603;116604;116605;116606;116607;116608;116609 117647;117648;117649;117650;117651;117652;117653;117654;117655;117656;117657;117658;117659;117660;117661;117662;117663;117664;117665;117666;117667;117668;117669;117670;117671 117657 25 LPSLGAGFSQGLK LSPQLQQLACECYSRLPSLGAGFSQGLKHT SRLPSLGAGFSQGLKHTESWEQELHSLLAS R L P L K H 1 0 0 0 0 1 0 3 0 0 3 1 0 1 1 2 0 0 0 0 0 0 13 0 1273.703 Q8IZL8;C9JFV4 Q8IZL8 243 255 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 0.00012571 132.78 By matching By MS/MS By matching By MS/MS By matching 1 2 2 2 2 1.0608 1.0302 12.064 9 Median NaN NaN NaN 0 0 Median 1.0608 0.92582 NaN 1 0 Median 0.82638 0.88109 5.2446 2 2 Median 1.2808 1.1245 12.381 2 0 Median 0.99929 1.0394 2.2829 2 0 Median 1.3516 1.1364 5.3865 2 0 Median 64320000 35049000 29271000 0 0 0 1463400 714030 749410 39513000 21464000 18049000 534160 176610 357550 22197000 12432000 9764400 612640 262260 350390 22094 3351 23048 116610;116611;116612;116613;116614;116615;116616;116617;116618 117672;117673;117674;117675;117676 117675 5 LPSNLPQLQNLIK ______________________________ NKLPSNLPQLQNLIKRDPPAYIEEFLQQYN K L P I K R 0 0 2 0 0 2 0 0 0 1 4 1 0 0 2 1 0 0 0 0 0 0 13 0 1476.8664 E7EW05;Q9NVU7;F8W8T7;D6RC74 E7EW05 9 21 SDAD1 Protein SDA1 homolog yes no 2 0.034488 26.442 By MS/MS By matching 1 1 0.61487 0.59346 2.5955 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54432 0.58267 NaN 1 0 Median 0.69457 0.60445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1689100 1097400 591700 0 0 0 0 0 0 1103100 746860 356260 585990 350550 235440 0 0 0 0 0 0 22095 899 23049 116619;116620 117677 117677 1 LPSNTLDR GLQLIIRNFWSHETRLPSNTLDRLLALNSL FWSHETRLPSNTLDRLLALNSLYSPKIEVH R L P D R L 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 8 0 914.48214 P78527 P78527 2531 2538 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0020287 140.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 4 0.86333 0.79991 29.006 14 Median 0.62365 0.61925 3.7269 2 0 Median 1.0549 0.87083 10.411 2 0 Median 0.68436 0.7345 10.461 2 1 Median 0.52623 0.46028 20.972 2 0 Median 0.87491 0.91402 26.577 2 1 Median 1.1787 0.96559 7.2658 4 3 Median 117680000 62299000 55382000 11762000 7414000 4348400 30636000 13863000 16772000 37028000 21553000 15475000 6158400 3740300 2418200 12832000 6891000 5941300 19265000 8837900 10427000 22096 2647 23050 116621;116622;116623;116624;116625;116626;116627;116628;116629;116630;116631;116632;116633;116634;116635 117678;117679;117680;117681;117682;117683;117684;117685;117686;117687;117688;117689;117690;117691;117692 117681 15 LPSQYNFAMNVLGR DVLDLRGRHHEASIRLPSQYNFAMNVLGRV RLPSQYNFAMNVLGRVKGRTGLRVVVKAVD R L P G R V 1 1 2 0 0 1 0 1 0 0 2 0 1 1 1 1 0 0 1 1 0 0 14 0 1608.8082 Q8TEM1 Q8TEM1 1233 1246 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 3.8342E-05 85.377 By MS/MS By matching By matching By matching 3 1 1 2 0.89783 0.97868 30.595 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89783 0.97868 21.266 3 0 Median 1.3015 1.1296 NaN 1 0 Median 0.84366 0.8822 NaN 1 0 Median 1.2854 1.069 63.449 2 0 Median 35573000 18759000 16813000 0 0 0 0 0 0 33070000 17601000 15469000 394430 138840 255590 1769100 884050 885030 338790 135270 203510 22097 3477 23051;23052 116636;116637;116638;116639;116640;116641;116642 117693;117694;117695;117696;117697 117697 1741 5 LPSRPGAQGVEPQNLR VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL PSRPGAQGVEPQNLRTLQGHSVIRSATNTT K L P L R T 1 2 1 0 0 2 1 2 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 1 1717.9224 A0A0U1RRM1;Q8WXI9 A0A0U1RRM1 225 240 GATAD2B Transcriptional repressor p66-beta yes no 2;3 6.7649E-07 86.641 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 5 4 2 0.70522 0.66849 21.488 16 Median NaN NaN NaN 0 0 Median 0.74474 0.69549 NaN 1 0 Median 0.62726 0.68863 8.4487 4 0 Median 0.71811 0.66071 13.53 5 0 Median 0.54097 0.58642 41.057 4 0 Median 0.77495 0.6928 4.1081 2 0 Median 183440000 110410000 73035000 0 0 0 1233300 715410 517870 94162000 59163000 34999000 27489000 15318000 12172000 54689000 32097000 22592000 5868700 3115200 2753500 22098 311 23053 116643;116644;116645;116646;116647;116648;116649;116650;116651;116652;116653;116654;116655;116656;116657;116658 117698;117699;117700;117701;117702;117703;117704;117705;117706;117707;117708;117709;117710;117711;117712;117713;117714;117715;117716;117717;117718 117698 21 LPSRPPLPGSGGSQSGAK ______________________________ RPPLPGSGGSQSGAKMRMGPGRKRDFSPVP R L P A K M 1 1 0 0 0 1 0 4 0 0 2 1 0 0 4 4 0 0 0 0 0 0 18 1 1691.8955 Q9Y570 Q9Y570 13 30 PPME1 Protein phosphatase methylesterase 1 yes yes 2;3 4.4269E-08 87.24 By MS/MS By MS/MS By MS/MS 3 1 2 0.57392 0.58147 9.1196 6 Median 0.53641 0.57482 11.995 3 0 Median 0.61405 0.578 NaN 1 0 Median 0.57876 0.62045 8.33 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37528000 23640000 13888000 23870000 15293000 8576900 6854900 4209600 2645300 6803200 4137500 2665800 0 0 0 0 0 0 0 0 0 22099 4453 23054 116659;116660;116661;116662;116663;116664 117719;117720;117721;117722;117723;117724;117725;117726;117727 117721 9 LPSSLLGPDPRPGLR LAARRWWAASPAPARLPSSLLGPDPRPGLR LPSSLLGPDPRPGLRATRAGPAGAARARPE R L P L R A 0 2 0 1 0 0 0 2 0 0 4 0 0 0 4 2 0 0 0 0 0 0 15 1 1573.894 Q8NC56;H7C2Z0 Q8NC56 172 186 LEMD2 LEM domain-containing protein 2 yes no 2;3 0.00063723 72.643 By matching By MS/MS By matching 1 4 1 0.51735 0.55993 10.583 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50948 0.55027 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50133 0.54106 10.322 4 0 Median 0.7425 0.65644 NaN 1 0 Median 34580000 22278000 12302000 0 0 0 0 0 0 3317000 2318900 998060 0 0 0 29976000 19244000 10732000 1286900 715590 571290 22100 3415 23055 116665;116666;116667;116668;116669;116670 117728;117729;117730 117728 3 LPSVPSTHLPAGPAPK ELLNVGDKEEEPSVKLPSVPSTHLPAGPAP PSVPSTHLPAGPAPKVDEDEEALKQLAEWV K L P P K V 2 0 0 0 0 0 0 1 1 0 2 1 0 0 5 2 1 0 0 1 0 0 16 0 1567.8722 Q9BY43;H0YIN6 Q9BY43 191 206 CHMP4A Charged multivesicular body protein 4a yes no 3 0.0011364 34.612 By MS/MS 1 0.47626 0.44699 NaN 1 Median 0.47626 0.44699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6810800 4442100 2368700 6810800 4442100 2368700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22101 3885 23056 116671 117731 117731 1 LPSVPTVDSVSQDPVSNMSITER DMGGESPGSRSSNAKLPSVPTVDSVSQDPV SVSQDPVSNMSITERLEHALEKAAPLLREI K L P E R L 0 1 1 2 0 1 1 0 0 1 1 0 1 0 3 5 2 0 0 4 0 0 23 0 2457.2057 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A494C0R9 E9PEM5 1777 1799 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 7.646E-12 56.766 By MS/MS 1 0.65887 0.66034 NaN 1 Median 0.65887 0.66034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4895800 3016500 1879200 4895800 3016500 1879200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22102 470 23057 116672 117732 117732 1 LPSYLDK KDHLQKRQGIPSKSRLPSYLDKVLKKRILN QGIPSKSRLPSYLDKVLKKRILNFLTESGW R L P D K V 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 7 0 834.44872 Q86TJ2 Q86TJ2 393 399 TADA2B Transcriptional adapter 2-beta yes yes 2 0.022334 73.616 By MS/MS By MS/MS 3 2 0.16748 0.16009 136.95 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.13955 0.11837 176.48 3 3 Median 0.24341 0.24453 59.908 2 2 Median NaN NaN NaN 0 0 Median 9095000 6556900 2538100 0 0 0 0 0 0 0 0 0 3860900 2621000 1239900 5234000 3935800 1298200 0 0 0 22103 3267 23058 116673;116674;116675;116676;116677 117733;117734;117735;117736;117737 117736 5 LPTAVVPLR PFATNGKLFPWAQIRLPTAVVPLRYELSLH PWAQIRLPTAVVPLRYELSLHPNLTSMTFR R L P L R Y 1 1 0 0 0 0 0 0 0 0 2 0 0 0 2 0 1 0 0 2 0 0 9 0 964.60695 Q9UIQ6 Q9UIQ6 168 176 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2 0.0065554 54.205 By MS/MS By MS/MS 1 1 0.83953 0.77018 5.4517 2 Median 0.76178 0.74106 NaN 1 0 Median 0.92521 0.80045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5052700 2505400 2547200 3627400 1788900 1838500 1425300 716530 708790 0 0 0 0 0 0 0 0 0 0 0 0 22104 4292 23059 116678;116679 117738;117739 117738 2 LPTEEEWEFAAR SWNDARAYCAWRGKRLPTEEEWEFAARGGL GKRLPTEEEWEFAARGGLKGQVYPWGNWFQ R L P A R G 2 1 0 0 0 0 4 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 12 0 1476.6885 J3KQJ1;Q8NBJ7;C9JL30;A8MXB9;A0A494C1B1;C9J660;H7C3B2;F8WA42 J3KQJ1 182 193 SUMF2 Sulfatase-modifying factor 2 yes no 2 0.0052097 60.518 By MS/MS 1 0.95001 0.93809 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95001 0.93809 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3296400 1697600 1598800 0 0 0 0 0 0 3296400 1697600 1598800 0 0 0 0 0 0 0 0 0 22105 1319 23060 116680 117740 117740 1 LPTEVNHVPSGPSIPADR GSTLTPHHPPALPSKLPTEVNHVPSGPSIP EVNHVPSGPSIPADRTVSHLAAAKLDAHSP K L P D R T 1 1 1 1 0 0 1 1 1 1 1 0 0 0 4 2 1 0 0 2 0 0 18 0 1884.9694 Q96T58 Q96T58 2994 3011 SPEN Msx2-interacting protein yes yes 3 2.8624E-06 60.764 By MS/MS By MS/MS 1 1 0.46961 0.45053 5.2231 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44203 0.46748 NaN 1 1 Median 0.4989 0.43419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9468700 6086000 3382700 0 0 0 0 0 0 8185200 5259700 2925500 1283500 826380 457150 0 0 0 0 0 0 22106 3741 23061 116681;116682 117741;117742 117741 2 LPTFGAPEQLVDLK KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ KLPTFGAPEQLVDLKQAGLEAAAKATSSHP K L P L K Q 1 0 0 1 0 1 1 1 0 0 3 1 0 1 2 0 1 0 0 1 0 0 14 0 1526.8344 Q14258;A0A3B3IUA7 Q14258 403 416 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 1.3946E-05 87.363 By MS/MS By MS/MS 1 2 0.95097 0.81972 11.93 3 Median 0.73104 0.73336 NaN 1 0 Median 1.0061 0.87351 8.9876 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28343000 15234000 13109000 19804000 11099000 8705400 8538900 4135500 4403300 0 0 0 0 0 0 0 0 0 0 0 0 22107 2870 23062 116683;116684;116685 117743;117744;117745;117746 117744 4 LPTGAQQHSILLLLNR LNKNGLITMQSHVIRLPTGAQQHSILLLLN PTGAQQHSILLLLNRFHVDRRSKYDILMEK R L P N R F 1 1 1 0 0 2 0 1 1 1 5 0 0 0 1 1 1 0 0 0 0 0 16 0 1773.0261 Q12789 Q12789 231 246 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2;3 3.763E-09 130.01 By matching By MS/MS By matching 2 4 1 0.82361 0.7781 14.962 7 Median NaN NaN NaN 0 0 Median 0.84879 0.7455 6.052 2 0 Median 0.76793 0.84192 20.704 4 0 Median 0.88773 0.76907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22235000 12805000 9429100 0 0 0 504000 295320 208680 21601000 12455000 9146300 129080 54887 74196 0 0 0 0 0 0 22108 2758 23063 116686;116687;116688;116689;116690;116691;116692 117747;117748;117749;117750;117751 117750 5 LPTGQISGPEIK KSSGCDVNLPGVNVKLPTGQISGPEIKGGL NVKLPTGQISGPEIKGGLKGSEVGFHGAAP K L P I K G 0 0 0 0 0 1 1 2 0 2 1 1 0 0 2 1 1 0 0 0 0 0 12 0 1238.6871 Q09666 Q09666 5513 5524 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.4616E-06 160.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 8 1 1 0.96139 0.89203 11.481 18 Median 0.90945 0.89601 2.3 2 0 Median 1.0849 0.96207 11.462 2 0 Median 0.85681 0.88931 17.349 4 1 Median 0.99299 0.89203 11.081 8 1 Median 0.86607 0.90656 NaN 1 0 Median 0.89935 0.77057 NaN 1 0 Median 218550000 112840000 105710000 35771000 19017000 16754000 22292000 11863000 10429000 78826000 40714000 38112000 67965000 34338000 33626000 10653000 5350900 5302400 3039800 1558000 1481800 22109 2749 23064 116693;116694;116695;116696;116697;116698;116699;116700;116701;116702;116703;116704;116705;116706;116707;116708;116709;116710 117752;117753;117754;117755;117756;117757;117758;117759;117760;117761;117762;117763;117764;117765;117766;117767;117768;117769;117770;117771;117772;117773;117774;117775;117776;117777;117778;117779 117758 28 LPTIDPNTR QSLEYLEQVRQHLSRLPTIDPNTRTLLLCG RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF R L P T R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 0 0 0 9 0 1025.5506 Q9BZE4;Q5T3R7 Q9BZE4 161 169 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.00061433 109.48 By matching By MS/MS By MS/MS 1 1 1 0.70735 0.65241 8.4721 3 Median NaN NaN NaN 0 0 Median 0.69888 0.60483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70735 0.71628 NaN 1 0 Median 0.75806 0.65241 NaN 1 0 Median 26714000 15888000 10827000 0 0 0 6086800 3884400 2202500 0 0 0 0 0 0 16465000 9922200 6542300 4162900 2081100 2081800 22110 3898 23065 116711;116712;116713 117780;117781 117780 2 LPTISQR QQTLPPPVFQMLLTKLPTISQRIVSAQSLA VFQMLLTKLPTISQRIVSAQSLAEDDVE__ K L P Q R I 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 7 0 813.47085 Q15388 Q15388 126 132 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 2 0.0066125 92.467 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 2 1 1.0681 1.0101 44.08 8 Median 0.96426 0.93596 NaN 1 0 Median 1.1968 1.0184 NaN 1 0 Median 0.97608 1.0335 4.3964 2 0 Median 1.1691 0.9196 NaN 1 0 Median 1.8334 1.9317 64.092 2 0 Median 0.73888 0.67226 NaN 1 0 Median 44404000 20545000 23859000 17532000 8724300 8808100 14370000 6167600 8202800 5798900 3004300 2794600 3444600 1507200 1937500 2954800 1004400 1950500 302740 137190 165550 22111 2945 23066 116714;116715;116716;116717;116718;116719;116720;116721 117782;117783;117784;117785;117786;117787 117785 6 LPTPSMMNDYYAASPR WLPKFSHADAQKMKRLPTPSMMNDYYAASP PTPSMMNDYYAASPRIFPHLCSLCNVECSH R L P P R I 2 1 1 1 0 0 0 0 0 0 1 0 2 0 3 2 1 0 2 0 0 0 16 0 1812.8175 Q14966 Q14966 407 422 ZNF638 Zinc finger protein 638 yes yes 2 7.4665E-07 94.191 By MS/MS 1 0.59022 0.65452 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59022 0.65452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3293700 2396700 897060 0 0 0 0 0 0 3293700 2396700 897060 0 0 0 0 0 0 0 0 0 22112 2903 23067 116722 117788;117789 117788 2 LPTPTSSVPAQK PKKSFDANGASTLSKLPTPTSSVPAQKTER LSKLPTPTSSVPAQKTERKESTSGDKPVSH K L P Q K T 1 0 0 0 0 1 0 0 0 0 1 1 0 0 3 2 2 0 0 1 0 0 12 0 1224.6714 Q9BTA9 Q9BTA9 291 302 WAC WW domain-containing adapter protein with coiled-coil yes yes 2 0.0014698 52.579 By MS/MS 1 0.56129 0.59559 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56129 0.59559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4599500 2770900 1828600 0 0 0 0 0 0 4599500 2770900 1828600 0 0 0 0 0 0 0 0 0 22113 3823 23068 116723 117790 117790 1 LPTPVLLPYKPQVIR AVRIAALQCMHALTRLPTPVLLPYKPQVIR LPTPVLLPYKPQVIRALAKPLDDKKRLVRK R L P I R A 0 1 0 0 0 1 0 0 0 1 3 1 0 0 4 0 1 0 1 2 0 0 15 1 1733.0604 Q96T76;H0Y746;H0Y7V3 Q96T76 984 998 MMS19 MMS19 nucleotide excision repair protein homolog yes no 3 0.064877 11.262 By MS/MS By matching 1 1 0.59026 0.58933 20.656 2 Median 0.49027 0.50925 NaN 1 0 Median 0.71066 0.68202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430100 2123800 1306300 2758400 1776700 981650 671680 347030 324650 0 0 0 0 0 0 0 0 0 0 0 0 22114 3742 23069 116724;116725 117791 117791 1 LPTPVNQATLSQTQGSEK SNNSPPLTNITPTQKLPTPVNQATLSQTQG PVNQATLSQTQGSEKLLVSSAPTHLTPNII K L P E K L 1 0 1 0 0 3 1 1 0 0 2 1 0 0 2 2 3 0 0 1 0 0 18 0 1897.9745 Q86T24 Q86T24 249 266 ZBTB33 Transcriptional regulator Kaiso yes yes 2 1.439E-07 86.803 By MS/MS 1 0.60872 0.63444 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60872 0.63444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6141600 3619500 2522100 0 0 0 0 0 0 6141600 3619500 2522100 0 0 0 0 0 0 0 0 0 22115 3265 23070 116726 117792 117792 1 LPTSALVNLSHGSR PGGLTIRCSPGRGYRLPTSALVNLSHGSRS RLPTSALVNLSHGSRSETGNQKLTAIVKPQ R L P S R S 1 1 1 0 0 0 0 1 1 0 3 0 0 0 1 3 1 0 0 1 0 0 14 0 1450.7892 Q8IZH2;H7C5E4 Q8IZH2 1164 1177 XRN1 5-3 exoribonuclease 1 yes no 2;3 2.7707E-05 82.515 By MS/MS 2 2.2841 2.1576 184.72 2 Median 2.2841 2.1576 184.72 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33347000 7253800 26093000 33347000 7253800 26093000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22116 3350 23071 116727;116728 117793;117794 117793 2 LPTSSKPPGAVPSNALTNPAPSK KVPANPASVSTVPSKLPTSSKPPGAVPSNA GAVPSNALTNPAPSKLPINSTRAGMVPSKV K L P S K L 3 0 2 0 0 0 0 1 0 0 2 2 0 0 6 4 2 0 0 1 0 0 23 1 2230.1957 Q7Z434 Q7Z434 326 348 MAVS Mitochondrial antiviral-signaling protein yes yes 3 0.00014403 27.928 By MS/MS 1 0.50094 0.46888 NaN 1 Median NaN NaN NaN 0 0 Median 0.50094 0.46888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4354300 2956300 1398000 0 0 0 4354300 2956300 1398000 0 0 0 0 0 0 0 0 0 0 0 0 22117 3244 23072 116729 117795 117795 1 LPTVPLSGMYNK KPEDVMPSVKGAQERLPTVPLSGMYNKSGG QERLPTVPLSGMYNKSGGKVRLTFKLEQDQ R L P N K S 0 0 1 0 0 0 0 1 0 0 2 1 1 0 2 1 1 0 1 1 0 0 12 0 1318.6955 O14562;H3BRL3 O14562 213 224 UBFD1 Ubiquitin domain-containing protein UBFD1 yes no 2 0.0010363 73.233 By MS/MS By MS/MS 1 2 0.89654 0.84242 9.0483 3 Median 0.89654 0.83774 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87976 0.90979 10.879 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28814000 14593000 14221000 6561600 3281000 3280500 0 0 0 22252000 11312000 10940000 0 0 0 0 0 0 0 0 0 22118 1230 23073;23074 116730;116731;116732 117796;117797;117798 117798 412 1 LPVALDPGAK ETKIKGKSGRFFTVKLPVALDPGAKISVIV FFTVKLPVALDPGAKISVIVETVYTHVLHP K L P A K I 2 0 0 1 0 0 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 10 0 979.57023 P04843 P04843 117 126 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.00039724 78.113 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 2 0.96653 0.9855 21.446 8 Median 0.75678 0.70143 NaN 1 0 Median 0.87029 0.72536 NaN 1 0 Median 0.89749 0.93866 1.9998 2 0 Median 1.2105 1.0303 NaN 1 0 Median 0.97304 1.0202 NaN 1 0 Median 1.5106 1.2437 2.7529 2 0 Median 125480000 65049000 60427000 51707000 28592000 23114000 28577000 14716000 13861000 34714000 16999000 17715000 3595800 1458900 2136900 4978500 2536100 2442300 1903700 746710 1157000 22119 1853 23075 116733;116734;116735;116736;116737;116738;116739;116740 117799;117800;117801;117802;117803 117802 5 LPVDIAYK QIATGGIIDPKESHRLPVDIAYKRGYFNEE DPKESHRLPVDIAYKRGYFNEELSEILSDP R L P Y K R 1 0 0 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 8 0 917.52222 P15924 P15924 2386 2393 DSP Desmoplakin yes yes 2 0.0074447 67.032 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 1 2 1 1.0246 0.9458 21.699 9 Median 0.90806 0.90414 NaN 1 0 Median 1.111 0.98193 14.614 4 0 Median 1.0246 1.1113 NaN 1 0 Median 0.78589 0.75429 41.996 2 0 Median NaN NaN NaN 0 0 Median 0.9859 0.84865 NaN 1 0 Median 31523000 15336000 16188000 5683100 2835800 2847300 18301000 8667400 9633900 3256900 1421900 1835000 3716800 2117800 1599000 0 0 0 565090 292610 272480 22120 2021 23076 116741;116742;116743;116744;116745;116746;116747;116748;116749 117804;117805;117806;117807;117808;117809;117810;117811 117804 8 LPVDILGR FLSGDKVKPVLLNSKLPVDILGRVWELSDI PVLLNSKLPVDILGRVWELSDIDHDGMLDR K L P G R V 0 1 0 1 0 0 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 8 0 881.53345 P42566;B1AUU8 P42566 160 167 EPS15 Epidermal growth factor receptor substrate 15 yes no 2 0.071363 30.185 By MS/MS By matching By matching 2 1 1 0.84784 0.87307 17.995 4 Linear 0.77837 0.77235 23.051 2 0 Median 0.97444 0.863 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78338 0.64417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4345800 2344800 2001000 3039800 1694500 1345300 1219000 608490 610520 0 0 0 87016 41833 45182 0 0 0 0 0 0 22121 580 23077 116750;116751;116752;116753 117812 117812 1 LPVDLAEELGHR HRAGARLDVRDAWGRLPVDLAEELGHRDVA WGRLPVDLAEELGHRDVARHPRLKEPERL_ R L P H R D 1 1 0 1 0 0 2 1 1 0 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1347.7147 J3QRG6;P42771;K7ES20;K7ENC6 J3QRG6 113 124 CDKN2A Cyclin-dependent kinase inhibitor 2A yes no 2;3 5.1455E-06 100.48 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 0.99647 0.9087 20.754 8 Median 0.89963 0.86817 5.706 2 0 Median 1.0321 0.8564 17.253 3 0 Median 1.1587 1.1749 35.592 2 1 Median 1.1772 1.0181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58432000 27984000 30448000 32379000 16006000 16372000 10066000 4900900 5165300 15570000 6864800 8705400 417130 211870 205270 0 0 0 0 0 0 22122 1350 23078 116754;116755;116756;116757;116758;116759;116760;116761 117813;117814;117815;117816;117817;117818;117819;117820;117821;117822 117816 10 LPVDSVFNKFEDEDSDDVPR ASNSPGQPNSVKRKKLPVDSVFNKFEDEDS VFNKFEDEDSDDVPRKRKLVPLDYGEDDKN K L P P R K 0 1 1 5 0 0 2 0 0 0 1 1 0 2 2 2 0 0 0 3 0 0 20 1 2322.0652 P49756 P49756 689 708 RBM25 RNA-binding protein 25 yes yes 3 8.6648E-05 37.672 By MS/MS 1 0.56231 0.63837 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56231 0.63837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3153200 1889100 1264100 0 0 0 0 0 0 3153200 1889100 1264100 0 0 0 0 0 0 0 0 0 22123 2397 23079 116762 117823 117823 1 LPVEDKIR AAQAPSSFQLLYDLKLPVEDKIRIIAQKIY QLLYDLKLPVEDKIRIIAQKIYGADDIELL K L P I R I 0 1 0 1 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 1 968.56548 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 820 827 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.031876 69.998 By MS/MS By MS/MS 1 1 1.1796 1.1704 3.7763 2 Median 1.0948 1.1396 NaN 1 0 Median 1.2709 1.2021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8284600 3906200 4378400 5841700 2724300 3117400 2442900 1181900 1261000 0 0 0 0 0 0 0 0 0 0 0 0 22124 1968 23080 116763;116764 117824;117825 117824 2 LPVEEAYK QAATGFIVDPVSNLRLPVEEAYKRGLVGIE DPVSNLRLPVEEAYKRGLVGIEFKEKLLSA R L P Y K R 1 0 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 8 0 947.4964 P15924 P15924 2310 2317 DSP Desmoplakin yes yes 2 0.0054254 75.854 By matching By matching By MS/MS 1 1 1 2.0943 2.0162 72.363 3 Plateau 0.73083 0.74229 NaN 1 0 Median 2.1374 2.03 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52726 0.49856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5525100 2762200 2762900 1477700 771590 706100 2962800 1287700 1675100 0 0 0 1084600 702870 381770 0 0 0 0 0 0 22125 2021 23081 116765;116766;116767 117826 117826 1 LPVEEAYKR QAATGFIVDPVSNLRLPVEEAYKRGLVGIE PVSNLRLPVEEAYKRGLVGIEFKEKLLSAE R L P K R G 1 1 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 1 1103.5975 P15924 P15924 2310 2318 DSP Desmoplakin yes yes 2 0.0032053 73.26 By MS/MS By MS/MS 1 1 0.75049 0.75243 0.0017648 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66495 0.75244 NaN 1 0 Median 0.84703 0.75242 NaN 1 0 Median 6783200 3914200 2868900 0 0 0 0 0 0 0 0 0 0 0 0 5228000 3086000 2142100 1555100 828260 726860 22126 2021 23082 116768;116769 117827;117828;117829;117830 117830 4 LPVEVAYK QIATGGIIDPEESHRLPVEVAYKRGLFDEE DPEESHRLPVEVAYKRGLFDEEMNEILTDP R L P Y K R 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 0 917.52222 Q15149;H0YDN1 Q15149 4198 4205 PLEC Plectin yes no 2 0.014714 50.703 By MS/MS 1 1.0583 1.0151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0583 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1798800 914700 884100 0 0 0 0 0 0 0 0 0 1798800 914700 884100 0 0 0 0 0 0 22127 2933 23083 116770 117831 117831 1 LPVGTTATLYFR DPKGKSLKDEDVLQKLPVGTTATLYFRDLG LQKLPVGTTATLYFRDLGAQISWVTVFLTE K L P F R D 1 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 3 0 1 1 0 0 12 0 1337.7343 Q9NZ01;M0R2N5 Q9NZ01 68 79 TECR Very-long-chain enoyl-CoA reductase yes no 2 8.2443E-06 125.48 By MS/MS By MS/MS By matching 2 3 1 1.1604 0.97496 18.01 6 Median 0.88959 0.85028 3.3238 2 0 Median 1.1813 0.99125 2.6983 3 1 Plateau NaN NaN NaN 0 0 Median 1.6487 1.3864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57354000 28882000 28473000 41393000 21347000 20046000 15882000 7498400 8383800 0 0 0 79409 36684 42725 0 0 0 0 0 0 22128 4181 23084 116771;116772;116773;116774;116775;116776 117832;117833;117834;117835;117836 117834 5 LPVLAGCLK GELKTQMTSAVREPKLPVLAGCLKGLSSLL AVREPKLPVLAGCLKGLSSLLCNFTKSMEE K L P L K G 1 0 0 0 1 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 9 0 969.56812 P78527 P78527 217 225 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0016555 79.116 By MS/MS By MS/MS 1 1 0.94484 0.91798 22.767 2 Median NaN NaN NaN 0 0 Median 1.2201 1.0783 NaN 1 0 Median 0.73165 0.78148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26105000 13744000 12361000 0 0 0 10563000 5001400 5561700 15542000 8742200 6799400 0 0 0 0 0 0 0 0 0 22129 2647 23085 116777;116778 117837;117838;117839;117840;117841;117842;117843 117838 7 LPVPAAAPTPWETHK LQAAAFLDFLWHNMKLPVPAAAPTPWETHK LPVPAAAPTPWETHKGALP___________ K L P H K G 3 0 0 0 0 0 1 0 1 0 1 1 0 0 4 0 2 1 0 1 0 0 15 0 1613.8566 Q12788;J3KNP2 Q12788 790 804 TBL3 Transducin beta-like protein 3 yes no 3 0.00037139 40.278 By MS/MS By matching 3 1 0.70469 0.70314 9.9382 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67113 0.71723 11.689 3 0 Median 0.7917 0.68932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25017000 14661000 10356000 0 0 0 0 0 0 24444000 14355000 10089000 573150 306630 266520 0 0 0 0 0 0 22130 2757 23086 116779;116780;116781;116782 117844;117845;117846 117844 3 LPVPASAPIPFFHR SEYTTSPKSSVLCPKLPVPASAPIPFFHRC KLPVPASAPIPFFHRCAPVNISCYAKFAEA K L P H R C 2 1 0 0 0 0 0 0 1 1 1 0 0 2 4 1 0 0 0 1 0 0 14 0 1547.8613 Q8WWI5 Q8WWI5 162 175 SLC44A1 Choline transporter-like protein 1 yes yes 3 0.00023117 65.563 By MS/MS 1 0.51792 0.51883 NaN 1 Median 0.51792 0.51883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5005500 3135500 1869900 5005500 3135500 1869900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22131 3509 23087 116783 117847 117847 1 LPVPESITGFAR VARIVKVQLPAYLKRLPVPESITGFARLTV LKRLPVPESITGFARLTVSEWLRLLPFLGV R L P A R L 1 1 0 0 0 0 1 1 0 1 1 0 0 1 2 1 1 0 0 1 0 0 12 0 1285.703 Q8N5K1;A0A2R8Y540;I3L1N9 Q8N5K1 21 32 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 4.8065E-06 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 0.86259 0.79632 14.066 8 Median 0.81651 0.79104 8.4213 3 0 Median 0.98749 0.84195 14.287 2 0 Median 0.91078 0.92147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89951 0.95306 NaN 1 0 Median 0.8324 0.65492 NaN 1 0 Median 108240000 55744000 52497000 53779000 29369000 24410000 33001000 15357000 17644000 18482000 9562900 8919300 0 0 0 2700700 1323200 1377500 278420 131930 146500 22132 3379 23088 116784;116785;116786;116787;116788;116789;116790;116791 117848;117849;117850;117851;117852;117853;117854;117855;117856 117852 9 LPVPLESVK KIIDDSDSNLSVVKKLPVPLESVKEMLNSV LSVVKKLPVPLESVKEMLNSVMQELEDYSE K L P V K E 0 0 0 0 0 0 1 0 0 0 2 1 0 0 2 1 0 0 0 2 0 0 9 0 980.59063 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 735 743 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0075799 51.066 By MS/MS 1 0.62589 0.67713 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62589 0.67713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3690500 2340100 1350400 0 0 0 0 0 0 3690500 2340100 1350400 0 0 0 0 0 0 0 0 0 22133 2401;525;3762 23089 116792 117857 117857 1 LPVQLQR AWGIKVERVEIKDVKLPVQLQRAMAAEAEA RVEIKDVKLPVQLQRAMAAEAEASREARAK K L P Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 852.51814 P27105 P27105 199 205 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.016513 68.398 By MS/MS 4 0.90682 0.75569 21.615 4 Median NaN NaN NaN 0 0 Median 0.90682 0.75569 21.615 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14348000 7136700 7211500 0 0 0 14348000 7136700 7211500 0 0 0 0 0 0 0 0 0 0 0 0 22134 2150 23090 116793;116794;116795;116796 117858 117858 1 LPVSDVLR KGGRIGIEEFAKYLKLPVSDVLRQLFALFD EFAKYLKLPVSDVLRQLFALFDRNHDGSID K L P L R Q 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 8 0 897.52837 Q7L5N7 Q7L5N7 390 397 LPCAT2 Lysophosphatidylcholine acyltransferase 2 yes yes 2 0.017569 48.561 By MS/MS 1 1.1781 0.99304 NaN 1 Median NaN NaN NaN 0 0 Median 1.1781 0.99304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4823900 1952000 2871900 0 0 0 4823900 1952000 2871900 0 0 0 0 0 0 0 0 0 0 0 0 22135 3226 23091 116797 117859 117859 1 LPVSKDEPDTLTLR SASGAAPLPVTMVSRLPVSKDEPDTLTLRS RLPVSKDEPDTLTLRSGPPSPPSTATSFGG R L P L R S 0 1 0 2 0 0 1 0 0 0 3 1 0 0 2 1 2 0 0 1 0 0 14 1 1582.8566 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 1841 1854 SRCAP Helicase SRCAP yes no 3 9.6666E-05 73.91 By MS/MS By MS/MS By matching 2 1 1 0.84537 0.91639 5.7694 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79164 0.9336 7.777 2 0 Median 0.90661 0.87523 NaN 1 0 Median 0.84083 0.95035 NaN 1 0 Median NaN NaN NaN 0 0 Median 26754000 14207000 12547000 0 0 0 0 0 0 22104000 11583000 10521000 660010 359050 300960 3990500 2265100 1725400 0 0 0 22136 3199 23092 116798;116799;116800;116801 117860;117861;117862 117861 3 LPVVIGGLLDVDCSEDVIK QKYIEIYVQKVNPSRLPVVIGGLLDVDCSE IGGLLDVDCSEDVIKNLILVVRGQFSTDEL R L P I K N 0 0 0 3 1 0 1 2 0 2 3 1 0 0 1 1 0 0 0 4 0 0 19 0 2040.0813 A0A087WVQ6;Q00610 A0A087WVQ6 816 834 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.0029674 25.824 By MS/MS 1 1.2301 1.0766 NaN 1 Median NaN NaN NaN 0 0 Median 1.2301 1.0766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1273100 426830 846240 0 0 0 1273100 426830 846240 0 0 0 0 0 0 0 0 0 0 0 0 22137 44 23093 116802 117863 117863 1 LPYDVTPEQALAHEEVK SWVNQMESQTGEASKLPYDVTPEQALAHEE YDVTPEQALAHEEVKTRLDSSIRNMRAVTD K L P V K T 2 0 0 1 0 1 3 0 1 0 2 1 0 0 2 0 1 0 1 2 0 0 17 0 1937.9735 P46940;A0A0J9YXZ5;H0YLE8 P46940 1112 1128 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 3.1676E-05 52.344 By MS/MS 5 0.89393 0.85493 25.248 5 Linear 0.89393 0.85493 25.248 5 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90966000 48260000 42707000 90966000 48260000 42707000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22138 2350 23094 116803;116804;116805;116806;116807 117864;117865;117866;117867;117868 117867 5 LPYDVTTEQALTYPEVK AWVNQLETQTGEASKLPYDVTTEQALTYPE YDVTTEQALTYPEVKNKLEASIENLRRVTD K L P V K N 1 0 0 1 0 1 2 0 0 0 2 1 0 0 2 0 3 0 2 2 0 0 17 0 1965.9935 E7EWC2;F5H7S7;Q13576 E7EWC2 975 991 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 0.00075491 55.452 By MS/MS 1 0.5721 0.5451 NaN 1 Median 0.5721 0.5451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2690700 1806400 884360 2690700 1806400 884360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22139 901 23095 116808 117869 117869 1 LPYHHVIHAVGPR GRLLPGNATISKAGKLPYHHVIHAVGPRWS GKLPYHHVIHAVGPRWSGYEAPRCVYLLRR K L P P R W 1 1 0 0 0 0 0 1 3 1 1 0 0 0 2 0 0 0 1 2 0 0 13 0 1494.8208 Q460N5;H7C5R8 Q460N5 872 884 PARP14 Poly [ADP-ribose] polymerase 14 yes no 3 0.065694 19.74 By MS/MS 1 0.83429 0.73299 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83429 0.73299 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 619370 393930 225450 0 0 0 0 0 0 0 0 0 619370 393930 225450 0 0 0 0 0 0 22140 3017 23096 116809 117870 117870 1 LQAALDDEEAGGR RRLSDKGLKAELMERLQAALDDEEAGGRPA ERLQAALDDEEAGGRPAMEPGNGSLDLGGD R L Q G R P 3 1 0 2 0 1 2 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1343.6317 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 38 50 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 8.3164E-07 101.93 By matching By MS/MS By MS/MS 1 3 2 1.1507 1.1003 20.335 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99776 1.0665 NaN 1 0 Median 1.3647 1.1662 8.2272 2 0 Median 0.90351 0.94393 33.721 2 1 Median NaN NaN NaN 0 0 Median 18991000 9014600 9976200 0 0 0 0 0 0 4508900 2153800 2355000 4720400 1552800 3167500 9761600 5307900 4453600 0 0 0 22141 2680 23097 116810;116811;116812;116813;116814;116815 117871;117872;117873;117874;117875;117876 117874 6 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR RRLSDKGLKAELMERLQAALDDEEAGGRPA PGNGSLDLGGDSAGRSGAGLEQEAAAGGDE R L Q G R S 5 2 1 4 0 1 3 7 0 0 4 0 1 0 2 2 0 0 0 0 0 0 32 1 3125.432 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 38 69 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 5.9877E-74 145.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 5 3 6 1 0.6805 0.74056 11.767 18 Median 0.64774 0.71965 12.709 2 0 Median 0.77345 0.74567 NaN 1 0 Median 0.59829 0.69131 16.719 5 0 Median 0.8088 0.75361 3.6814 3 0 Median 0.63834 0.70538 12.949 6 0 Median 0.74617 0.67453 NaN 1 0 Median 466180000 264060000 202130000 48686000 27542000 21144000 2176800 1155100 1021600 191940000 112120000 79821000 22272000 11382000 10890000 199940000 111290000 88656000 1158700 566370 592380 22142 2680 23098;23099 116816;116817;116818;116819;116820;116821;116822;116823;116824;116825;116826;116827;116828;116829;116830;116831;116832;116833 117877;117878;117879;117880;117881;117882;117883;117884;117885;117886;117887;117888;117889;117890;117891;117892;117893;117894;117895;117896;117897;117898;117899 117878 1357 23 LQAAVDGPMDKKEE GLTKEYDRLLEEHAKLQAAVDGPMDKKEE_ KLQAAVDGPMDKKEE_______________ K L Q E E - 2 0 0 2 0 1 2 1 0 0 1 2 1 0 1 0 0 0 0 1 0 0 14 2 1529.7396 P51572;A0A2R8Y5M6 P51572 233 246 BCAP31 B-cell receptor-associated protein 31 yes no 2;3 8.296E-05 75.669 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.0528 0.98439 30.419 8 Median 1.2281 1.2487 34.942 3 0 Median 1.0876 0.99654 4.8279 3 0 Median 0.55185 0.5975 NaN 1 0 Median 0.80627 0.72473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37561000 16720000 20841000 13068000 5626100 7442200 23425000 10394000 13031000 583770 455150 128620 484080 244920 239170 0 0 0 0 0 0 22143 2436 23100 116834;116835;116836;116837;116838;116839;116840;116841 117900;117901;117902;117903;117904;117905;117906;117907;117908 117903 9 LQAAYAGDK ALGTQVRQLQEDAARLQAAYAGDKADDIQK QEDAARLQAAYAGDKADDIQKRENEVLEAW R L Q D K A 3 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 0 935.47125 Q01082;A0A087WUZ3 Q01082 1870 1878 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.058563 28.727 By MS/MS By matching By matching 1 1 1 0.8736 0.83955 16.873 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8736 0.96908 NaN 1 0 Median 0.93 0.83955 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80395 0.69235 NaN 1 0 Median 2160600 1107100 1053500 0 0 0 0 0 0 1178500 663040 515500 460990 207830 253170 0 0 0 521080 236280 284800 22144 2681 23101 116842;116843;116844 117909 117909 1 LQAAYAGDKADDIQK ALGTQVRQLQEDAARLQAAYAGDKADDIQK LQAAYAGDKADDIQKRENEVLEAWKSLLDA R L Q Q K R 4 0 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 15 1 1605.7999 Q01082;A0A087WUZ3 Q01082 1870 1884 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00015343 49.188 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.85399 0.76521 13.494 5 Median NaN NaN NaN 0 0 Median 1.0843 1.0343 NaN 1 0 Median 0.66152 0.7619 0.61199 2 0 Median 0.92667 0.87241 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85399 0.76208 NaN 1 0 Median 26535000 13588000 12947000 0 0 0 7886000 3935300 3950700 12481000 6795800 5685600 4331600 2089800 2241800 0 0 0 1835900 766980 1069000 22145 2681 23102 116845;116846;116847;116848;116849 117910;117911;117912;117913;117914 117911 5 LQAAYAGDKADDIQKR ALGTQVRQLQEDAARLQAAYAGDKADDIQK QAAYAGDKADDIQKRENEVLEAWKSLLDAC R L Q K R E 4 1 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 16 2 1761.901 Q01082;A0A087WUZ3 Q01082 1870 1885 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 2.1049E-05 76.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 4 1.0516 1.1637 18.901 17 Median 1.1815 1.249 14.24 3 1 Median 1.1108 1.1834 2.3803 2 0 Median 0.88613 1.1707 19.251 3 0 Median 1.0839 1.177 23.36 3 0 Median 0.95298 1.1203 6.1782 2 0 Median 0.99647 0.98885 17.941 4 0 Median 123330000 61903000 61424000 13593000 6043700 7548900 16765000 7665300 9100200 60561000 32649000 27912000 5429100 2504200 2924900 15019000 7351200 7667400 11960000 5689300 6270800 22146 2681 23103 116850;116851;116852;116853;116854;116855;116856;116857;116858;116859;116860;116861;116862;116863;116864;116865;116866 117915;117916;117917;117918;117919;117920;117921;117922;117923;117924;117925;117926;117927;117928;117929;117930;117931;117932;117933;117934;117935;117936;117937;117938;117939;117940;117941;117942 117939 28 LQAEAFQAR EEVHAKVEEQGNQMRLQAEAFQARLRSWFE QGNQMRLQAEAFQARLRSWFEPLVEDMQRQ R L Q A R L 3 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5352 P02649;CON__Q03247 CON__Q03247 269 277 APOE Apolipoprotein E no no 2 9.7081E-08 136.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 0.13105 0.12123 111.79 8 Median NaN NaN NaN 0 0 Median 0.14925 0.12359 44.664 2 2 Median 0.084209 0.083299 NaN 1 1 Median 0.074365 0.057728 206.69 2 2 Median 0.11192 0.11543 48.868 2 2 Median 0.79636 0.64572 NaN 1 1 Median 61834000 53594000 8239800 0 0 0 4987300 4073300 914010 4195600 3763800 431840 19785000 15951000 3833600 30601000 28751000 1849900 2264900 1054400 1210500 + 22147 767;1835 23104 116867;116868;116869;116870;116871;116872;116873;116874 117943;117944;117945;117946;117947;117948;117949;117950 117944 8 LQAEAPHIVVGTPGR HACIGGTNVRNEMQKLQAEAPHIVVGTPGR LQAEAPHIVVGTPGRVFDMLNRRYLSPKWI K L Q G R V 2 1 0 0 0 1 1 2 1 1 1 0 0 0 2 0 1 0 0 2 0 0 15 0 1543.8471 Q14240;E7EQG2 Q14240 148 162 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes no 3 5.234E-05 74.89 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 0.58541 0.62671 36.915 7 Median 0.55971 0.53338 45.525 3 2 Median 0.90475 0.78898 NaN 1 0 Median 0.58443 0.60356 7.9673 2 0 Median 0.91711 0.78864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116690000 72856000 43837000 40047000 28029000 12019000 13883000 7013000 6870500 37090000 24739000 12351000 25671000 13075000 12596000 0 0 0 0 0 0 22148 2867 23105 116875;116876;116877;116878;116879;116880;116881 117951;117952;117953;117954;117955;117956;117957;117958 117958 8 LQAEAQQLR KELEVAEGGKAELERLQAEAQQLRKEERSW KAELERLQAEAQQLRKEERSWEQKLEEMRK R L Q L R K 2 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1055.5724 Q16543;K7EKQ2;K7EQA9 Q16543 84 92 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 2.1307E-12 151.27 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.0266 0.8787 22.363 6 Median 1.1438 1.1239 NaN 1 1 Median 0.97147 0.83162 4.6261 2 1 Median 0.98559 1.0052 41.836 2 0 Median 1.032 0.89856 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26394000 12813000 13581000 4924100 2040500 2883700 17271000 8678100 8592400 2432700 1149600 1283100 1766500 944590 821940 0 0 0 0 0 0 22149 2988 23106 116882;116883;116884;116885;116886;116887;116888 117959;117960;117961;117962;117963;117964 117962 6 LQAEDYKFDFPVSYLPGPVK EFLDPGGPMMKLVYKLQAEDYKFDFPVSYL YKFDFPVSYLPGPVKASIQECILPDSPLYH K L Q V K A 1 0 0 2 0 1 1 1 0 0 2 2 0 2 3 1 0 0 2 2 0 0 20 1 2312.1729 Q9NXE4;C9J647 Q9NXE4 139 158 SMPD4 Sphingomyelin phosphodiesterase 4 no no 3 0.0062997 24.011 By MS/MS By matching 1 1 0.69137 0.70751 26.685 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74689 0.85443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63998 0.58585 NaN 1 0 Median 3212600 1841700 1370900 0 0 0 0 0 0 3097000 1778800 1318200 0 0 0 0 0 0 115520 62879 52643 22150 4162;678 23107 116889;116890 117965 117965 1 LQAEEAER AREKQRALQALEELRLQAEEAERRLRQAEV QALEELRLQAEEAERRLRQAEVERARQVQV R L Q E R R 2 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 8 0 944.45632 Q15149 Q15149 1680 1687 PLEC Plectin yes yes 2 0.030362 38.962 By MS/MS 1 1.2886 1.0814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2886 1.0814 NaN 1 0 Median 812770 342640 470130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 812770 342640 470130 22151 2933 23108 116891 117966 117966 1 LQAEEVAQQK LERWQLKANEALRLRLQAEEVAQQKSLAQA ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE R L Q Q K S 2 0 0 0 0 3 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1142.5932 Q15149 Q15149 1783 1792 PLEC Plectin yes yes 2 0.00039551 95.815 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1 1.3221 1.2243 24.256 6 Median 1.2111 1.1962 NaN 1 0 Median 1.8119 1.5903 NaN 1 0 Median 1.0997 1.2122 NaN 1 0 Median 1.2087 1.12 NaN 1 0 Median 2.01 2.1125 NaN 1 0 Median 1.4433 1.2365 NaN 1 0 Median 18930000 6595700 12335000 1808700 801420 1007300 7620300 2501800 5118500 1128900 471300 657610 550390 175060 375330 3729400 1028600 2700800 4092600 1617400 2475100 22152 2933 23109 116892;116893;116894;116895;116896;116897 117967;117968;117969;117970;117971;117972 117972 6 LQAEIEGLK RTKTEISEMNRNISRLQAEIEGLKGQRASL NRNISRLQAEIEGLKGQRASLEAAIADAEQ R L Q L K G 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 999.56006 P05787;CON__P05787 P05787 317 325 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0004478 126.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 5 6 7 1.3436 1.1927 21.514 27 Median 1.5105 1.3836 52.107 2 0 Median 1.6155 1.3578 13.4 3 0 Median 1.2139 1.1441 15.513 5 0 Median 1.3702 1.2437 21.633 5 0 Median 1.4271 1.4526 7.2427 5 1 Median 1.1449 0.94116 9.9672 7 0 Median 2493200000 1097100000 1396100000 218660000 100710000 117940000 261840000 110550000 151280000 762720000 336720000 426000000 483870000 211290000 272580000 344680000 142840000 201840000 421480000 195030000 226450000 + 22153 750 23110 116898;116899;116900;116901;116902;116903;116904;116905;116906;116907;116908;116909;116910;116911;116912;116913;116914;116915;116916;116917;116918;116919;116920;116921;116922;116923;116924;116925 117973;117974;117975;117976;117977;117978;117979;117980;117981;117982;117983;117984;117985;117986;117987;117988;117989;117990;117991;117992;117993;117994;117995;117996;117997;117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015;118016;118017;118018;118019 117990 46 LQAEIEGLKGQR RTKTEISEMNRNISRLQAEIEGLKGQRASL ISRLQAEIEGLKGQRASLEAAIADAEQRGE R L Q Q R A 1 1 0 0 0 2 2 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1340.7412 P05787;CON__P05787 P05787 317 328 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 3.8392E-40 223.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 6 13 10 1.304 1.2873 27.854 37 Median 1.684 1.7371 51.268 4 0 Median NaN NaN NaN 0 0 Median 1.3669 1.4692 3.0487 4 0 Median 1.4315 1.2936 15.232 6 0 Median 1.304 1.3939 20.131 13 1 Median 1.1927 1.0474 16.482 10 1 Median 1716500000 748970000 967570000 143300000 60009000 83293000 0 0 0 39626000 15091000 24535000 162550000 66072000 96474000 842290000 361690000 480600000 528770000 246100000 282670000 + 22154 750 23111 116926;116927;116928;116929;116930;116931;116932;116933;116934;116935;116936;116937;116938;116939;116940;116941;116942;116943;116944;116945;116946;116947;116948;116949;116950;116951;116952;116953;116954;116955;116956;116957;116958;116959;116960;116961;116962 118020;118021;118022;118023;118024;118025;118026;118027;118028;118029;118030;118031;118032;118033;118034;118035;118036;118037;118038;118039;118040;118041;118042;118043;118044;118045;118046;118047;118048;118049;118050;118051;118052;118053;118054;118055;118056;118057;118058;118059;118060;118061;118062;118063;118064;118065;118066;118067;118068;118069;118070;118071;118072;118073;118074;118075;118076;118077 118023 58 LQAEISQAAR EKIAQRLRTKAQLEKLQAEISQAARKTGIH AQLEKLQAEISQAARKTGIHTSTRLALIAP K L Q A R K 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1085.5829 O43395 O43395 351 360 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.00036244 120.12 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1003 0.98373 21.635 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76609 0.80127 19.571 2 0 Median 1.2203 1.0517 NaN 1 0 Median 1.1385 1.2091 NaN 1 1 Median 1.2321 1.0304 24.612 2 0 Median 21870000 10821000 11049000 0 0 0 0 0 0 12575000 6519100 6055600 3982200 1776100 2206200 2211200 1028500 1182700 3102200 1497700 1604400 22155 1569 23112 116963;116964;116965;116966;116967;116968 118078;118079;118080;118081;118082;118083;118084;118085;118086 118080 9 LQAELEER L Q E R 1 1 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 986.50327 REV__F5H7P8 yes yes 2 0.0024268 119.29 By MS/MS 1 1.0866 1.0271 NaN 1 Median 1.0866 1.0271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56060000 26451000 29608000 56060000 26451000 29608000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22156 4519 23113 116969 118087 118087 1 LQAELQGAVR ENQELANSRMAELEKLQAELQGAVRTNERL AELEKLQAELQGAVRTNERLKVALRSLPEE K L Q V R T 2 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1083.6037 O75150 O75150 356 365 RNF40 E3 ubiquitin-protein ligase BRE1B yes yes 2 9.2008E-12 146.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.86815 0.80043 15.045 5 Median 0.94702 0.91491 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85402 0.93894 NaN 1 1 Median 0.8593 0.73356 12.338 2 2 Median NaN NaN NaN 0 0 Median 0.86815 0.70318 NaN 1 1 Median 46269000 23705000 22564000 6576000 3150100 3425900 0 0 0 15484000 8060500 7423400 20060000 10068000 9992000 0 0 0 4149200 2426200 1723000 22157 1648 23114 116970;116971;116972;116973;116974 118088;118089;118090;118091;118092 118090 5 LQAENDASKEEVK STRRDQDNMQAELNRLQAENDASKEEVKEV NRLQAENDASKEEVKEVLQALEELAVNYDQ R L Q V K E 2 0 1 1 0 1 3 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 13 1 1459.7155 P33176 P33176 477 489 KIF5B Kinesin-1 heavy chain yes yes 2 0.0018013 74.944 By MS/MS 1 1.1734 1.0971 NaN 1 Median NaN NaN NaN 0 0 Median 1.1734 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2234500 904430 1330100 0 0 0 2234500 904430 1330100 0 0 0 0 0 0 0 0 0 0 0 0 22158 2221 23115 116975 118093;118094 118094 2 LQAFGLNPK GPTVMLGGCEFSRQRLQAFGLNPKRLHFRQ EFSRQRLQAFGLNPKRLHFRQLGRQRRKQQ R L Q P K R 1 0 1 0 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 9 0 986.55492 A0A494C108;Q8N9T8 A0A494C108 680 688 KRI1 Protein KRI1 homolog yes no 2 0.0060753 55.676 By MS/MS By matching 1 1 0.73821 0.70904 17.717 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7285 0.80367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74805 0.62555 NaN 1 0 Median 5426200 2886900 2539300 0 0 0 0 0 0 5083500 2714000 2369500 0 0 0 0 0 0 342740 172980 169770 22159 463 23116 116976;116977 118095 118095 1 LQAFSAAIESCNK LRLASHLNLAMCHLKLQAFSAAIESCNKAL LKLQAFSAAIESCNKALELDSNNEKGLFRR K L Q N K A 3 0 1 0 1 1 1 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 13 0 1437.6922 Q02790 Q02790 332 344 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 2.6589E-05 104.79 By MS/MS By MS/MS 2 1 1.0094 0.85853 37.09 3 Median 0.77842 0.75736 51.444 2 1 Median 1.0094 0.85853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18907000 8525000 10382000 13282000 5805000 7476600 5625900 2720100 2905800 0 0 0 0 0 0 0 0 0 0 0 0 22160 2701 23117 116978;116979;116980 118096;118097 118096 2 LQAGEYVSLGK DGCLKIIDRKKDLVKLQAGEYVSLGKVEAA DLVKLQAGEYVSLGKVEAALKNLPLVDNIC K L Q G K V 1 0 0 0 0 1 1 2 0 0 2 1 0 0 0 1 0 0 1 1 0 0 11 0 1163.6186 O60488;O95573 O95573 586 596 ACSL4;ACSL3 Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3 no no 2 0.0010545 61.161 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2295 1.1643 15.452 4 Median 0.98398 0.88614 NaN 1 0 Median 1.2634 1.105 NaN 1 0 Median 1.1966 1.2328 NaN 1 0 Median 1.4117 1.2269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29053000 14119000 14935000 15462000 8170500 7291900 4598600 1841000 2757600 7716800 3542600 4174200 1275300 564460 710840 0 0 0 0 0 0 22161 1780;1615 23118 116981;116982;116983;116984 118098;118099;118100;118101 118098 4 LQAILKPMMLR MQEFGDLKTEEQVQKLQAILKPMMLRRLKE QVQKLQAILKPMMLRRLKEDVEKNLAPKEE K L Q L R R 1 1 0 0 0 1 0 0 0 1 3 1 2 0 1 0 0 0 0 0 0 0 11 1 1312.7723 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;H0YJG4;Q9P2D1;H3BTW3;Q3L8U1 Q9P2D1 1178 1188 CHD8;CHD7;CHD9 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 9 no no 3 0.00095173 70.977 By MS/MS 2 0.81858 0.94782 5.738 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81858 0.94782 5.738 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11167000 6000000 5166700 0 0 0 0 0 0 11167000 6000000 5166700 0 0 0 0 0 0 0 0 0 22162 4220;4030 23119 116985;116986 118102;118103 118102 2 LQAITASSANLR QRPTKELHGTSIVPKLQAITASSANLRHSP VPKLQAITASSANLRHSPRVLVQHCPARTP K L Q L R H 3 1 1 0 0 1 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1243.6884 I3VM54;Q9Y2K7 I3VM54 802 813 KDM2A Lysine-specific demethylase 2A yes no 2 0.00012009 90.108 By MS/MS By MS/MS By matching 2 1 2 1.3283 1.3865 39.91 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1348 1.2159 18.567 2 1 Median NaN NaN NaN 0 0 Median 2.3749 2.487 NaN 1 0 Median 1.4064 1.1589 40.34 2 0 Median 21255000 9095500 12160000 0 0 0 0 0 0 13280000 6466900 6812600 0 0 0 4723500 1349600 3374000 3252000 1279000 1973000 22163 1296 23120 116987;116988;116989;116990;116991 118104;118105;118106;118107 118104 4 LQALANEQAAAAHELEK DIQNMNFLLKAEVQKLQALANEQAAAAHEL ALANEQAAAAHELEKMQQSVYVKDDKIRLL K L Q E K M 6 0 1 0 0 2 3 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1805.9272 Q86UP2 Q86UP2 654 670 KTN1 Kinectin yes yes 2;3 3.1957E-12 102.73 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 2 1 1.0979 0.96091 24.656 10 Median 1.2921 1.2394 25.299 4 2 Median 1.0409 0.90182 0.30795 2 0 Median 1.1553 1.2304 NaN 1 0 Median 1.0837 0.96091 3.4054 2 1 Median NaN NaN NaN 0 0 Median 0.76192 0.63509 NaN 1 0 Median 163340000 72760000 90582000 106730000 47303000 59424000 16372000 7786600 8585800 26917000 12070000 14847000 12562000 5207600 7354200 0 0 0 764170 393120 371060 22164 3280 23121 116992;116993;116994;116995;116996;116997;116998;116999;117000;117001 118108;118109;118110;118111;118112;118113;118114;118115;118116;118117 118110 10 LQALDTGWNELHK TQGQTDAQYMFLRQRLQALDTGWNELHKMW QRLQALDTGWNELHKMWENRQNLLSQSHAY R L Q H K M 1 0 1 1 0 1 1 1 1 0 3 1 0 0 0 0 1 1 0 0 0 0 13 0 1523.7732 Q01082;A0A087WUZ3 Q01082 1144 1156 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 4.3513E-15 182.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 4 3 4 1 1.0751 1.0089 12.199 19 Median 1.1959 1.1504 11.75 3 0 Median 1.2203 1.0816 9.813 4 2 Median 0.91397 1.0016 9.5269 4 0 Median 1.0481 0.94443 10.42 3 0 Median 0.92509 0.96874 15.794 4 2 Median 1.1185 0.96041 NaN 1 0 Median 328280000 160490000 167790000 32740000 14215000 18525000 59681000 26801000 32880000 193050000 97668000 95385000 9039600 4454100 4585600 32921000 16948000 15972000 847020 406240 440790 22165 2681 23122 117002;117003;117004;117005;117006;117007;117008;117009;117010;117011;117012;117013;117014;117015;117016;117017;117018;117019;117020 118118;118119;118120;118121;118122;118123;118124;118125;118126;118127;118128;118129;118130;118131;118132;118133;118134 118124 17 LQALKDTANR ______________________________ PDQQKLQALKDTANRLRISSIQATTAAGSG K L Q N R L 2 1 1 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1128.6251 P29401;E9PFF2;F8W888;F8WAX4 P29401 12 21 TKT Transketolase yes no 2 0.0069178 65.305 By MS/MS 1 1.0083 1.0125 NaN 1 Median 1.0083 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6290900 2857000 3433900 6290900 2857000 3433900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22166 2173 23123 117021 118135;118136 118135 2 LQALKEEPQTVPEMPGETPPLSPIDMESQER PPHHLPQQMPVQHPRLQALKEEPQTVPEMP ETPPLSPIDMESQERIKAERKRMRNRIAAS R L Q E R I 1 1 0 1 0 3 6 1 0 1 3 1 2 0 6 2 2 0 0 1 0 0 31 1 3475.6851 P05412 P05412 222 252 JUN Transcription factor AP-1 yes yes 3 2.1995E-21 75.717 By MS/MS 1 0.2944 0.33436 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2944 0.33436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4091600 3491400 600220 0 0 0 0 0 0 4091600 3491400 600220 0 0 0 0 0 0 0 0 0 22167 1866 23124 117022 118137 118137 1 LQALLEAR TTSGESESDDSEMGRLQALLEARGLPPHLF DDSEMGRLQALLEARGLPPHLFGPLGPRMS R L Q A R G 2 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 912.53927 Q14669 Q14669 402 409 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0027953 104.75 By MS/MS 1 1.1979 1.3126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1979 1.3126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7785100 3444500 4340600 0 0 0 0 0 0 7785100 3444500 4340600 0 0 0 0 0 0 0 0 0 22168 2886 23125 117023 118138;118139 118139 2 LQALQADYQALQQR ELQNVVGRNQLLEGKLQALQADYQALQQRE KLQALQADYQALQQRESAIQGSLASLEAEQ K L Q Q R E 3 1 0 1 0 5 0 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 14 0 1644.8584 Q9BQS8 Q9BQS8 639 652 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 2 2.1917E-05 130.01 By MS/MS By matching 1 1 1.18 1.0711 17.18 2 Median 1.0048 0.94859 NaN 1 0 Median 1.3858 1.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7300700 3412400 3888300 6697100 3154900 3542200 603610 257450 346150 0 0 0 0 0 0 0 0 0 0 0 0 22169 3791 23126 117024;117025 118140 118140 1 LQAMHLER TQIRPTMFPPKDPEKLQAMHLERCLRILPH PPKDPEKLQAMHLERCLRILPHHQNTGGFF K L Q E R C 1 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 996.51748 Q08J23 Q08J23 401 408 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0067784 69.825 By MS/MS 1 1.2515 1.0828 NaN 1 Median NaN NaN NaN 0 0 Median 1.2515 1.0828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5488300 2332000 3156300 0 0 0 5488300 2332000 3156300 0 0 0 0 0 0 0 0 0 0 0 0 22170 2745 23127 117026 118141;118142 118142 2 LQAMMTHLHVK VVQQLELQLAKDKERLQAMMTHLHVKSTEP DKERLQAMMTHLHVKSTEPKAAPQPLNLVS R L Q V K S 1 0 0 0 0 1 0 0 2 0 2 1 2 0 0 0 1 0 0 1 0 0 11 0 1307.6842 A0A3B3IT14;A0A3B3IS87;G5E965;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;C9J0F0;A0A3B3IST6;A0A3B3IUB6;A0A3B3IRS5;A0A3B3IST0;A0A3B3IS20;Q9H334;A0A3B3ISQ6 A0A3B3IT14 262 272 FOXP1 Forkhead box protein P1 yes no 3 0.0031997 38.021 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.3238 1.1181 11.55 4 Linear 1.0402 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2582 1.3368 NaN 1 0 Median 1.2395 1.0762 NaN 1 0 Median 1.0711 1.1616 NaN 1 0 Median NaN NaN NaN 0 0 Median 8068600 3813100 4255600 965220 473520 491700 0 0 0 4285900 2093800 2192100 1590600 683320 907290 1226900 562450 664470 0 0 0 22171 224 23128 117027;117028;117029;117030 118143;118144;118145;118146 118144 4 LQANISTGVSK KGPLSQEALMELFPKLQANISTGVSKIRLL LFPKLQANISTGVSKIRLLTIRILNHFDVQ K L Q S K I 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1116.6139 O75691 O75691 634 644 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0028386 56.548 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.2749 1.292 13.978 7 Median NaN NaN NaN 0 0 Median 1.4783 1.292 NaN 1 1 Median 1.2416 1.383 NaN 1 0 Median 1.3795 1.3064 NaN 1 0 Median 1.1676 1.2431 20.022 2 0 Median 1.2422 1.0438 6.4397 2 0 Median 21249000 9969400 11280000 0 0 0 5698900 2756600 2942200 4832100 2049400 2782700 1136100 475220 660930 4591800 2346000 2245800 4990300 2342100 2648100 22172 1691 23129 117031;117032;117033;117034;117035;117036;117037 118147;118148;118149;118150;118151 118149 5 LQANWNR RELFEDLLRQMSDLRLQANWNRAEEENEFQ LRQMSDLRLQANWNRAEEENEFQIPGRTRP R L Q N R A 1 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 7 0 900.4566 Q8N0X7 Q8N0X7 335 341 SPG20 Spartin yes yes 2 0.072289 35.105 By MS/MS 1 1.1041 0.97668 NaN 1 Median NaN NaN NaN 0 0 Median 1.1041 0.97668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1257000 564810 692190 0 0 0 1257000 564810 692190 0 0 0 0 0 0 0 0 0 0 0 0 22173 3352 23130 117038 118152 118152 1 LQAPLSEPTLSQHTHDYPYSLVSR PSIWLKDLASYLNYKLQAPLSEPTLSQHTH LSQHTHDYPYSLVSRELRGIIRGLLAKAAG K L Q S R E 1 1 0 1 0 2 1 0 2 0 4 0 0 0 3 4 2 0 2 1 0 0 24 0 2738.3664 Q6NUQ4;H7C0H8 Q6NUQ4 153 176 TMEM214 Transmembrane protein 214 yes no 4 1.6637E-16 69.548 By MS/MS 1 0.59379 0.60745 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59379 0.60745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7555900 4830900 2725000 0 0 0 0 0 0 7555900 4830900 2725000 0 0 0 0 0 0 0 0 0 22174 3145 23131 117039 118153;118154;118155 118154 3 LQAQLDLIEK NEWQDDWPTFFARHRLQAQLDLIEKDYADR FARHRLQAQLDLIEKDYADREARELWSRLQ R L Q E K D 1 0 0 1 0 2 1 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1169.6656 Q9H479 Q9H479 173 182 FN3K Fructosamine-3-kinase yes yes 2 0.004195 54.066 By MS/MS By matching 1 1 1.1337 1.0287 24.55 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89871 0.86473 NaN 1 0 Median 1.4302 1.2237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10976000 5871200 5104500 0 0 0 0 0 0 10405000 5663900 4741100 570780 207340 363450 0 0 0 0 0 0 22175 3962 23132 117040;117041 118156;118157 118157 2 LQAQLDLIEKDYADR NEWQDDWPTFFARHRLQAQLDLIEKDYADR LQAQLDLIEKDYADREARELWSRLQVKIPD R L Q D R E 2 1 0 3 0 2 1 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 15 1 1789.921 Q9H479 Q9H479 173 187 FN3K Fructosamine-3-kinase yes yes 3 0.00011112 56.147 By MS/MS By matching 1 1 1.165 1.1792 36.204 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84086 0.91284 NaN 1 0 Median 1.614 1.5232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10293000 5229200 5063900 0 0 0 0 0 0 10043000 5145000 4898400 249770 84268 165500 0 0 0 0 0 0 22176 3962 23133 117042;117043 118158 118158 1 LQAQLNELQAQLSQK AVQAQGGESQQEAQRLQAQLNELQAQLSQK LQAQLNELQAQLSQKEQAAEHYKLQMEKAK R L Q Q K E 2 0 1 0 0 5 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 15 0 1710.9264 A0A087WY61;K4DIE0;Q14980 Q14980 1589 1603 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 4.0755E-73 252.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 6 4 4 1 0.96102 0.97273 21.021 21 Median 1.3083 1.2844 55.334 2 0 Median 1.1442 1.0028 5.8081 4 0 Linear 0.92569 1.0161 23.375 6 0 Median 1.1387 1.0421 7.9445 4 0 Median 0.93193 0.97787 8.4908 4 0 Linear 0.90973 0.78567 NaN 1 0 Median 391210000 192800000 198420000 14001000 6855900 7145000 83887000 38845000 45042000 202470000 102890000 99580000 6120200 2768000 3352200 84418000 41275000 43143000 315700 161620 154080 22177 2905;77 23134 117044;117045;117046;117047;117048;117049;117050;117051;117052;117053;117054;117055;117056;117057;117058;117059;117060;117061;117062;117063;117064 118159;118160;118161;118162;118163;118164;118165;118166;118167;118168;118169;118170;118171;118172;118173;118174;118175;118176 118163 18 LQAQLNELQAQLSQKEQAAEHYK AVQAQGGESQQEAQRLQAQLNELQAQLSQK QAQLSQKEQAAEHYKLQMEKAKTHYDAKKQ R L Q Y K L 4 0 1 0 0 6 3 0 1 0 4 2 0 0 0 1 0 0 1 0 0 0 23 1 2667.3616 A0A087WY61;K4DIE0;Q14980 Q14980 1589 1611 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 1.3856E-29 119.87 By MS/MS 2 0.83148 0.96504 4.8183 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83148 0.96504 4.8183 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54149000 26294000 27855000 0 0 0 0 0 0 54149000 26294000 27855000 0 0 0 0 0 0 0 0 0 22178 2905;77 23135 117065;117066 118177;118178;118179;118180;118181 118179 5 LQAQSLSTVGPR GLRERELEEIRAKLRLQAQSLSTVGPRLAS KLRLQAQSLSTVGPRLASEYLTPEEMVTFK R L Q P R L 1 1 0 0 0 2 0 1 0 0 2 0 0 0 1 2 1 0 0 1 0 0 12 0 1255.6884 O43290 O43290 374 385 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 5.6521E-06 144.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1 1 1.0953 0.9671 9.9235 7 Median 1.0841 1.0613 NaN 1 0 Median 1.1328 0.9671 NaN 1 0 Median 0.76342 0.80778 NaN 1 0 Median 1.1078 0.94808 0.1867 2 0 Median 0.9641 1.0071 NaN 1 0 Median 1.3493 1.0967 NaN 1 0 Median 49438000 25121000 24317000 2652600 1235400 1417100 3109200 1395800 1713400 25172000 13294000 11877000 11036000 5417000 5619400 5043300 2762900 2280300 2425100 1015400 1409800 22179 1563 23136 117067;117068;117069;117070;117071;117072;117073 118182;118183;118184;118185;118186;118187;118188;118189;118190 118183 9 LQASNVTNK ______________________________ ______________________________ K L Q N K N 1 0 2 0 0 1 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 9 0 973.51926 Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1;Q5QPM2 Q9UKM9 5 13 RALY RNA-binding protein Raly yes no 2 0.01817 41.029 By matching By MS/MS By matching 1 1 1 0.95624 0.92765 14.341 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95624 0.92765 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80664 0.79713 NaN 1 0 Median 1.2823 1.0618 NaN 1 0 Median 2257700 1264400 993300 0 0 0 0 0 0 174530 104290 70234 0 0 0 1650500 965730 684770 432690 194390 238300 22180 4313 23137 117074;117075;117076 118191 118191 1 LQATEVR SSHVRGVGSRGFPLRLQATEVRICPVEFNP GSRGFPLRLQATEVRICPVEFNPNFVARMI R L Q V R I 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 7 0 815.45012 Q9UI30;F5GX77 Q9UI30 25 31 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 2 0.020057 60.788 By MS/MS 1 1.4373 1.2148 NaN 1 Median NaN NaN NaN 0 0 Median 1.4373 1.2148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1336900 535080 801790 0 0 0 1336900 535080 801790 0 0 0 0 0 0 0 0 0 0 0 0 22181 1005 23138 117077 118192 118192 1 LQAVEVVITHLAPGTK EVTYKMCSIPPKNEKLQAVEVVITHLAPGT QAVEVVITHLAPGTKHETWSGHVISS____ K L Q T K H 2 0 0 0 0 1 1 1 1 1 2 1 0 0 1 0 2 0 0 3 0 0 16 0 1674.9669 Q9Y2V2 Q9Y2V2 121 136 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 2;3 3.5544E-05 76.522 By MS/MS By matching By matching 3 3 1 0.98198 0.89588 7.5778 7 Median 0.95045 0.89588 4.5117 3 0 Median 1.0713 0.92744 7.9777 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98198 0.78681 NaN 1 0 Median 55937000 27688000 28249000 52562000 26075000 26488000 3105900 1500800 1605000 0 0 0 0 0 0 0 0 0 268980 112900 156080 22182 4393 23139 117078;117079;117080;117081;117082;117083;117084 118193;118194;118195;118196;118197 118194 5 LQAVMETLLQR ______________________________ ______________________________ K L Q Q R Q 1 1 0 0 0 2 1 0 0 0 3 0 1 0 0 0 1 0 0 1 0 0 11 0 1300.7173 Q99856 Q99856 3 13 ARID3A AT-rich interactive domain-containing protein 3A yes yes 2 0.00015693 114.84 By MS/MS By matching 1 1 1.1802 1.099 5.7354 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0371 1.0553 NaN 1 0 Median 1.343 1.1445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12752000 6292400 6459900 0 0 0 0 0 0 12216000 6087800 6128500 535920 204590 331330 0 0 0 0 0 0 22183 3772 23140 117085;117086 118198;118199 118199 2 LQAVTDDHIR TSAFLLWDPTKVPPRLQAVTDDHIRMHKVL KVPPRLQAVTDDHIRMHKVLRESGLKYVAV R L Q I R M 1 1 0 2 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1166.6044 P30043;A0A2R8YEP4 P30043 125 134 BLVRB Flavin reductase (NADPH) yes no 2 0.00036818 110.41 By MS/MS By MS/MS By MS/MS 1 1 1 0.96284 0.92124 16.54 3 Median 0.92613 0.87396 NaN 1 0 Median 1.3993 1.1906 NaN 1 0 Median 0.96284 0.92124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10001000 5099700 4901000 4636800 2496100 2140800 1182000 469270 712770 4181800 2134400 2047500 0 0 0 0 0 0 0 0 0 22184 2180 23141 117087;117088;117089 118200;118201;118202;118203;118204;118205 118200 6 LQAWLTR LCGSLAQLACVEPVRLQAWLTRMTTSPPKD LACVEPVRLQAWLTRMTTSPPKDSDQLDVI R L Q T R M 1 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 7 0 886.50249 Q5T4S7;A0A0A0MSW0 Q5T4S7 1464 1470 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0068317 91.626 By MS/MS By MS/MS 1 1 1.1645 1.055 3.0069 2 Median 1.0293 1.0328 NaN 1 0 Median 1.3175 1.0776 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13527000 5820700 7706000 4637900 2320200 2317700 8888800 3500500 5388300 0 0 0 0 0 0 0 0 0 0 0 0 22185 3089 23142 117090;117091 118206;118207;118208 118207 3 LQAYHTQTTPLIEYYR LIRRSDDNEKALKIRLQAYHTQTTPLIEYY QAYHTQTTPLIEYYRKRGIHSAIDASQTPD R L Q Y R K 1 1 0 0 0 2 1 0 1 1 2 0 0 0 1 0 3 0 3 0 0 0 16 0 1996.0054 F8W1A4;P54819;F8VY04 F8W1A4 187 202 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2;3 1.4212E-27 203.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 1 1.083 1.0592 22.085 10 Median 0.95554 0.90692 15.202 4 0 Median 1.5458 1.3108 3.7526 2 0 Median 0.86168 0.82706 9.5905 2 0 Median 1.5297 1.2676 NaN 1 0 Median 1.4034 1.4088 NaN 1 0 Median NaN NaN NaN 0 0 Median 639870000 320700000 319170000 555790000 281930000 273860000 26372000 9655200 16717000 45947000 23783000 22163000 2881400 1118300 1763100 8888500 4214800 4673700 0 0 0 22186 1081 23143 117092;117093;117094;117095;117096;117097;117098;117099;117100;117101 118209;118210;118211;118212;118213;118214;118215;118216;118217;118218;118219;118220;118221;118222;118223;118224;118225;118226;118227 118216 18 LQAYHTQTTPLIEYYRK LIRRSDDNEKALKIRLQAYHTQTTPLIEYY AYHTQTTPLIEYYRKRGIHSAIDASQTPDV R L Q R K R 1 1 0 0 0 2 1 0 1 1 2 1 0 0 1 0 3 0 3 0 0 0 17 1 2124.1004 F8W1A4;P54819;F8VY04 F8W1A4 187 203 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 3;4 7.0194E-06 65.105 By MS/MS 2 1.1137 1.1626 3.0162 2 Median 1.1137 1.1626 3.0162 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31354000 14021000 17333000 31354000 14021000 17333000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22187 1081 23144 117102;117103 118228;118229 118229 2 LQDAINILK GKYVGLVRVLAKHGKLQDAINILKEMKEKD LAKHGKLQDAINILKEMKEKDVLIKDTTAL K L Q L K E 1 0 1 1 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6073 P42704 P42704 764 772 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00096126 88.294 By MS/MS By MS/MS By MS/MS 1 2 1 1.1834 1.0646 32.028 4 Median 1.0026 0.96392 NaN 1 0 Median 1.6355 1.4161 26.294 2 0 Median 0.74812 0.80869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64744000 29427000 35317000 30719000 15277000 15441000 28397000 11123000 17274000 5628700 3027400 2601300 0 0 0 0 0 0 0 0 0 22188 2315 23145 117104;117105;117106;117107 118230;118231;118232;118233 118230 4 LQDEFENR GQKQSTTFRRLLISKLQDEFENRTRNVDVY RRLLISKLQDEFENRTRNVDVYDKRENPLL K L Q N R T 0 1 1 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1049.4778 P78344;D3DQV9;H0Y3P2;H0YCH5;H0YD77;H0YEC5 P78344 171 178 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.0038342 85.064 By MS/MS By MS/MS 1 2 1.0199 0.98628 14.516 3 Median 1.0199 0.98628 NaN 1 0 Median 1.1135 0.95742 20.385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9722200 4351500 5370700 4032100 2061200 1970900 5690100 2290300 3399800 0 0 0 0 0 0 0 0 0 0 0 0 22189 2639 23146 117108;117109;117110 118234;118235;118236 118235 3 LQDEIQNMK NFAVEAANYQDTIGRLQDEIQNMKEEMARH QDTIGRLQDEIQNMKEEMARHLREYQDLLN R L Q M K E 0 0 1 1 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1117.5438 P08670;B0YJC4;B0YJC5 P08670 365 373 VIM Vimentin yes no 2 0.00081745 96.253 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.93025 0.87464 10.629 4 Median NaN NaN NaN 0 0 Median 0.94668 1.0489 NaN 1 0 Median 0.8648 0.8785 NaN 1 0 Median 0.95502 0.81944 NaN 1 0 Median 0.91409 0.87079 NaN 1 1 Median NaN NaN NaN 0 0 Median 14004000 6161900 7842600 0 0 0 1716500 765580 950870 3786400 1001200 2785200 3942400 2132200 1810200 4559100 2262900 2296300 0 0 0 22190 1907 23147 117111;117112;117113;117114 118237;118238 118238 2 LQDEIQNMKEEMAR NFAVEAANYQDTIGRLQDEIQNMKEEMARH RLQDEIQNMKEEMARHLREYQDLLNVKMAL R L Q A R H 1 1 1 1 0 2 3 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 14 1 1733.8077 P08670;B0YJC4;B0YJC5 P08670 365 378 VIM Vimentin yes no 2;3 1.5313E-31 208.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 7 8 9 10 1.049 1.0928 25.451 42 Median 0.87835 0.87327 52.215 4 0 Median 1.3506 1.2321 31.587 4 0 Median 1.0296 1.1434 13.92 7 1 Median 1.202 1.1263 18.422 8 0 Median 1.1452 1.1761 18.021 9 2 Median 0.95561 0.8447 20.697 10 0 Median 1072600000 500600000 571980000 112150000 57370000 54775000 36486000 15055000 21431000 184720000 85691000 99027000 107190000 43895000 63296000 513530000 237560000 275970000 118510000 61028000 57477000 22191 1907 23148;23149 117115;117116;117117;117118;117119;117120;117121;117122;117123;117124;117125;117126;117127;117128;117129;117130;117131;117132;117133;117134;117135;117136;117137;117138;117139;117140;117141;117142;117143;117144;117145;117146;117147;117148;117149;117150;117151;117152;117153;117154;117155;117156 118239;118240;118241;118242;118243;118244;118245;118246;118247;118248;118249;118250;118251;118252;118253;118254;118255;118256;118257;118258;118259;118260;118261;118262;118263;118264;118265;118266;118267;118268;118269;118270;118271;118272;118273;118274;118275;118276 118247 681;682 38 LQDFKLDFGNSQGK IHLRNPSAAFFCVARLQDFKLDFGNSQGKT RLQDFKLDFGNSQGKTSQTWHGGIATIFQS R L Q G K T 0 0 1 2 0 2 0 2 0 0 2 2 0 2 0 1 0 0 0 0 0 0 14 1 1595.7944 O75223;B8ZZK2 O75223 46 59 GGCT Gamma-glutamylcyclotransferase yes no 3 0.002905 46.964 By MS/MS 1 0.98347 0.99887 NaN 1 Median 0.98347 0.99887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19853000 10543000 9309500 19853000 10543000 9309500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22192 1656 23150 117157 118277 118277 1 LQDIITALEER TPTANQWDYKNIIEKLQDIITALEERLKPL IIEKLQDIITALEERLKPLVQAELSVLVDV K L Q E R L 1 1 0 1 0 1 2 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1299.7034 Q14573 Q14573 1595 1605 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 0.023016 52.278 By MS/MS 1 1.3719 1.1642 NaN 1 Median NaN NaN NaN 0 0 Median 1.3719 1.1642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1313500 586700 726790 0 0 0 1313500 586700 726790 0 0 0 0 0 0 0 0 0 0 0 0 22193 2883 23151 117158 118278 118278 1 LQDISELLATGAGLSESEAEPDGDHNITELPQAVAGR GMKKLLQEKFPNMSRLQDISELLATGAGLS GDHNITELPQAVAGRGNMRAQQSAVRLTEI R L Q G R G 5 1 1 3 0 2 5 4 1 2 5 0 0 0 2 3 2 0 0 1 0 0 37 0 3802.8497 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;C9J3W3 A0A0A6YYI3 224 260 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 3 1.0595E-05 31.404 By MS/MS 1 0.81586 0.82088 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81586 0.82088 NaN 1 0 Median NaN NaN NaN 0 0 Median 2076500 1146300 930230 0 0 0 0 0 0 0 0 0 0 0 0 2076500 1146300 930230 0 0 0 22194 205 23152 117159 118279;118280 118279 2 LQDLDTDYGSGYPNDPK VARDQAVKKWQFVEKLQDLDTDYGSGYPND DLDTDYGSGYPNDPKTKAWLKEHVEPVFGF K L Q P K T 0 0 1 4 0 1 0 2 0 0 2 1 0 0 2 1 1 0 2 0 0 0 17 0 1896.8378 O75792 O75792 199 215 RNASEH2A Ribonuclease H2 subunit A yes yes 2 2.9971E-05 53.967 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74658 0.7001 6.1147 4 Median 0.74039 0.6887 NaN 1 0 Median 0.75088 0.63646 NaN 1 0 Median 0.74231 0.71169 NaN 1 0 Median 0.86314 0.73361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16357000 9179700 7176900 9035500 5118200 3917300 844530 442710 401820 5302400 3022500 2280000 1174100 596290 577820 0 0 0 0 0 0 22195 1695 23153 117160;117161;117162;117163 118281;118282;118283;118284;118285;118286 118281 6 LQDLELK PKEHHRFVIGKNGEKLQDLELKTATKIQIP VIGKNGEKLQDLELKTATKIQIPRPDDPSN K L Q L K T 0 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 857.48583 Q00341;A0A024R4E5;H0Y394;H7C0A4;C9JIZ1;C9J5E5 Q00341 173 179 HDLBP Vigilin yes no 2 0.056263 50.127 By MS/MS 1 1.1332 0.96515 NaN 1 Median NaN NaN NaN 0 0 Median 1.1332 0.96515 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5577700 2596500 2981300 0 0 0 5577700 2596500 2981300 0 0 0 0 0 0 0 0 0 0 0 0 22196 4 23154 117164 118287 118287 1 LQDLLLGPK KKRQRQQKQRQLLGRLQDLLLGPKADEQTT RQLLGRLQDLLLGPKADEQTTCEVLDYFLR R L Q P K A 0 0 0 1 0 1 0 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 995.60153 Q8N201 Q8N201 954 962 INTS1 Integrator complex subunit 1 yes yes 2 0.0049967 58.981 By matching By matching By MS/MS By matching By matching By matching 2 4 3 5 1 1 1.1617 1.1658 14.288 16 Median 1.0988 1.142 3.0796 2 0 Median 1.2406 1.2319 8.0458 4 0 Linear 1.1129 1.2718 23.083 3 0 Median 1.2016 1.1644 5.1559 5 0 Median 1.2241 1.3688 NaN 1 0 Median 0.90581 0.78674 NaN 1 0 Median 38600000 18586000 20014000 17574000 8202600 9371700 4369900 1936200 2433600 12133000 6335200 5798000 3093200 1382000 1711200 1268600 666630 601950 161150 63668 97482 22197 3360 23155 117165;117166;117167;117168;117169;117170;117171;117172;117173;117174;117175;117176;117177;117178;117179;117180 118288 118288 1 LQDLLVVPMQR KVEECTLKVQDGKFKLQDLLVVPMQRVLKY GKFKLQDLLVVPMQRVLKYHLLLKELLSHS K L Q Q R V 0 1 0 1 0 2 0 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 11 0 1310.738 P52735 P52735 325 335 VAV2 Guanine nucleotide exchange factor VAV2 yes yes 2 0.0004849 68.735 By MS/MS By MS/MS 1 1 1.2404 1.169 5.2156 2 Median 1.1205 1.1266 NaN 1 0 Median 1.3731 1.2129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2499400 1205900 1293500 1194200 586680 607520 1305200 619220 685970 0 0 0 0 0 0 0 0 0 0 0 0 22198 2455 23156 117181;117182 118289;118290 118289 2 LQDLQGEKDALHSEK LQVEMKKMESDFEQKLQDLQGEKDALHSEK LQDLQGEKDALHSEKQQIATEKQDLEAEVS K L Q E K Q 1 0 0 2 0 2 2 1 1 0 3 2 0 0 0 1 0 0 0 0 0 0 15 1 1709.8584 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 513 527 DIAPH1 Protein diaphanous homolog 1 yes no 3;4 1.1064E-07 89.624 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 1 1 2 1 1.1347 1.0702 18.925 8 Median 0.99944 0.96005 25.442 3 0 Median 1.1912 1.1076 NaN 1 1 Median 0.90232 1.0339 NaN 1 0 Median 1.316 1.2302 11.981 2 0 Median NaN NaN NaN 0 0 Median 1.0827 0.97985 NaN 1 0 Median 35101000 17160000 17941000 21305000 10422000 10883000 6211700 2593600 3618000 4259400 2865200 1394200 2392100 943610 1448500 0 0 0 932450 335800 596640 22199 274 23157 117183;117184;117185;117186;117187;117188;117189;117190 118291;118292;118293;118294;118295;118296;118297;118298 118295 8 LQDLTLR LPDLPEDKLAQSVQKLQDLTLRDLEKQERE KLAQSVQKLQDLTLRDLEKQEREKAANSLE K L Q L R D 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 857.49707 A0A087X054;A0A494C039;Q9Y4L1;A0A2R8Y358;A0A1W2PS94;Q9BXT5 A0A087X054 661 667 HYOU1;TEX15 Hypoxia up-regulated protein 1;Testis-expressed sequence 15 protein yes no 2 0.037258 46.426 By MS/MS 1 1.4181 1.1836 NaN 1 Median NaN NaN NaN 0 0 Median 1.4181 1.1836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12864000 4927100 7937100 0 0 0 12864000 4927100 7937100 0 0 0 0 0 0 0 0 0 0 0 0 22200 101 23158 117191 118299 118299 1 LQDLTLRDLEK LPDLPEDKLAQSVQKLQDLTLRDLEKQERE SVQKLQDLTLRDLEKQEREKAANSLEAFIF K L Q E K Q 0 1 0 2 0 1 1 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 11 1 1342.7456 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 661 671 HYOU1 Hypoxia up-regulated protein 1 yes no 3 0.050603 17.587 By MS/MS By matching 1 1 0.60376 0.65797 23.976 2 Median 0.74881 0.77954 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48681 0.55537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8081500 4371600 3709900 6387900 3252400 3135500 0 0 0 1693600 1119200 574430 0 0 0 0 0 0 0 0 0 22201 101 23159 117192;117193 118300;118301 118301 2 LQDLVNR ILTCGRDGEPEPMQKLQDLVNRTPWKKCCF GEPEPMQKLQDLVNRTPWKKCCFSGDGEYI K L Q N R T 0 1 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 Q15291 Q15291 245 251 RBBP5 Retinoblastoma-binding protein 5 yes yes 2 0.020057 60.788 By matching By MS/MS By matching 1 1 1 0.99812 1.052 29.624 3 Median NaN NaN NaN 0 0 Median 1.2531 1.0805 NaN 1 0 Median 0.99812 1.052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74567 0.63858 NaN 1 0 Median 4209700 1920900 2288800 0 0 0 1400700 497050 903610 1644600 864460 780150 0 0 0 0 0 0 1164400 559350 605040 22202 2939 23160 117194;117195;117196 118302 118302 1 LQDPFSLYR MIDSRDDFTEERLAKLQDPFSLYRCHTIMN EERLAKLQDPFSLYRCHTIMNCTRTCPKGL K L Q Y R C 0 1 0 1 0 1 0 0 0 0 2 0 0 1 1 1 0 0 1 0 0 0 9 0 1137.5819 P21912 P21912 234 242 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes yes 2 0.00081745 96.253 By MS/MS By MS/MS 2 1 0.9332 0.88789 7.8223 3 Median 0.92456 0.87884 1.449 2 0 Median NaN NaN NaN 0 0 Median 1.049 1.0052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72858000 37834000 35024000 67911000 35530000 32381000 0 0 0 4946700 2304100 2642600 0 0 0 0 0 0 0 0 0 22203 2093 23161 117197;117198;117199 118303;118304;118305;118306 118303 4 LQDQIFNLMK NEKILEEPHPLMFQKLQDQIFNLMKYDSYS LMFQKLQDQIFNLMKYDSYSRFLKSDLFLK K L Q M K Y 0 0 1 1 0 2 0 0 0 1 2 1 1 1 0 0 0 0 0 0 0 0 10 0 1248.6536 O43665 O43665 130 139 RGS10 Regulator of G-protein signaling 10 yes yes 2 0.047132 28.918 By matching By matching By MS/MS 2 1 1 0.92092 0.88542 24.313 4 Median 0.87337 0.86696 29.58 2 0 Median 0.77193 0.73361 NaN 1 0 Median 1.1785 1.116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9051500 4790600 4260900 2908000 1605400 1302600 1709200 1018200 690980 4434400 2167000 2267300 0 0 0 0 0 0 0 0 0 22204 1582 23162 117200;117201;117202;117203 118307 118307 1 LQDSFASETNLDFR QDSLFASRTLFKSRRLQDSFASETNLDFRS RLQDSFASETNLDFRSGLAIVSQHDLDQLQ R L Q F R S 1 1 1 2 0 1 1 0 0 0 2 0 0 2 0 2 1 0 0 0 0 0 14 0 1641.7635 Q92621 Q92621 1936 1949 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00020957 77.64 By matching By MS/MS By matching 1 2 1 1.4935 1.4459 28.428 4 Median NaN NaN NaN 0 0 Median 1.9979 1.7068 NaN 1 0 Median 1.0972 1.1893 4.157 2 0 Median 2.4254 2.1097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9379200 4329600 5049600 0 0 0 816010 211400 604600 8485300 4089300 4396000 77916 28985 48931 0 0 0 0 0 0 22205 3547 23163 117204;117205;117206;117207 118308 118308 1 LQDSQLWK PLLTEKQYIATIHSRLQDSQLWKLPGLQAT IATIHSRLQDSQLWKLPGLQATVRLAWALA R L Q W K L 0 0 0 1 0 2 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 8 0 1016.5291 Q92621 Q92621 314 321 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0024287 119.41 By MS/MS By MS/MS 1 1 1.2881 1.2849 11.896 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0726 1.1813 NaN 1 0 Median 1.5469 1.3977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24412000 12326000 12087000 0 0 0 0 0 0 21331000 11126000 10205000 3081600 1200000 1881600 0 0 0 0 0 0 22206 3547 23164 117208;117209 118309;118310;118311;118312 118310 4 LQDVADSFKK ADGERKVEHLAVRFKLQDVADSFKKIFDEA AVRFKLQDVADSFKKIFDEAKTAQEKDSLI K L Q K K I 1 0 0 2 0 1 0 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 10 1 1149.603 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2425 2434 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0054443 64.04 By MS/MS 1 0.75081 0.85356 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75081 0.85356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2677400 1522200 1155200 0 0 0 0 0 0 2677400 1522200 1155200 0 0 0 0 0 0 0 0 0 22207 2401;525;3762 23165 117210 118313 118313 1 LQDVSGQLNSTK KEELALEKKRELEKRLQDVSGQLNSTKKPP EKRLQDVSGQLNSTKKPPKKANEKTESSSA R L Q T K K 0 0 1 1 0 2 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 12 0 1288.6623 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;A0A0G2JHN8;A0A140T9I1 H0Y6K2 746 757 BRD2 Bromodomain-containing protein 2 yes no 2 0.00048458 77.379 By MS/MS By MS/MS 1 2 1.2305 1.07 8.8232 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0364 1.07 NaN 1 1 Median 1.3351 1.1099 12.114 2 0 Median 6983700 3329200 3654500 0 0 0 0 0 0 0 0 0 0 0 0 5138200 2499000 2639200 1845500 830280 1015300 22208 279 23166 117211;117212;117213 118314;118315;118316 118315 3 LQDVSGQLSSSK KEELAQEKKKELEKRLQDVSGQLSSSKKPA EKRLQDVSGQLSSSKKPARKEKPGSAPSGG R L Q S K K 0 0 0 1 0 2 0 1 0 0 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1247.6357 Q15059 Q15059 672 683 BRD3 Bromodomain-containing protein 3 yes yes 2 0.0035847 69.01 By MS/MS By MS/MS 2 1 1.0655 1.0161 4.138 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89516 0.98679 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2682 1.0463 NaN 1 1 Median 6257300 3085900 3171500 0 0 0 0 0 0 4191400 2140000 2051300 0 0 0 0 0 0 2065900 945800 1120100 22209 2923 23167 117214;117215;117216 118317;118318;118319 118317 3 LQDYEEK EKEQMMREKEELMLRLQDYEEKTKKAEREL EKEELMLRLQDYEEKTKKAERELSEQIQRA R L Q E K T 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 7 0 923.42363 P15311;E7EQR4 P15311 351 357 EZR Ezrin yes no 2 0.0095833 83.753 By MS/MS By MS/MS By MS/MS 2 1 1 1.201 1.1339 3.3917 4 Linear NaN NaN NaN 0 0 Median 1.2262 1.0715 0.91169 2 0 Median 1.1373 1.1294 NaN 1 0 Median 1.2008 1.0425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37259000 17203000 20056000 0 0 0 4536800 1976000 2560700 31069000 14513000 16556000 1653100 713570 939550 0 0 0 0 0 0 22210 879 23168 117217;117218;117219;117220 118320;118321;118322;118323;118324 118320 5 LQEAGILSAEELQR EHSFDGLRRKVSAQRLQEAGILSAEELQRL RLQEAGILSAEELQRLAQGHTTVDELARRE R L Q Q R L 2 1 0 0 0 2 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1555.8206 Q15149;H0YDN1 Q15149 2795 2808 PLEC Plectin yes no 2;3 1.5512E-16 187.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1 1 1.3463 1.1672 19.882 12 Median 1.2117 1.1659 27.054 3 0 Median 1.3512 1.0808 15.36 3 1 Median 1.3595 1.4549 33.182 2 0 Median 1.4288 1.2457 9.052 2 0 Median 1.2145 1.2452 NaN 1 0 Median 1.3501 1.1185 NaN 1 0 Median 195090000 85264000 109830000 104390000 45719000 58674000 27644000 11274000 16370000 41270000 18439000 22831000 2043200 811410 1231800 13628000 6337500 7290700 6115600 2683000 3432600 22211 2933 23169 117221;117222;117223;117224;117225;117226;117227;117228;117229;117230;117231;117232 118325;118326;118327;118328;118329;118330;118331;118332;118333;118334;118335;118336;118337 118325 13 LQEALEDER QYLQRVRELEDMYLKLQEALEDERQARQDE EDMYLKLQEALEDERQARQDEETVRKLQAR K L Q E R Q 1 1 0 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1101.5302 Q9UH65;E7EMB1 Q9UH65 429 437 SWAP70 Switch-associated protein 70 yes no 2 0.00021342 141.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1168 1.0195 19.153 6 Median 1.1168 1.1058 6.4955 2 0 Median 1.1387 0.984 NaN 1 0 Median 0.78598 0.82962 NaN 1 1 Median 1.0921 0.93695 34.385 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46106000 20950000 25157000 18568000 8432600 10136000 21404000 9531800 11872000 3671600 1857800 1813900 2462900 1127500 1335300 0 0 0 0 0 0 22212 4270 23170 117233;117234;117235;117236;117237;117238 118338;118339;118340;118341;118342;118343 118339 6 LQEALER FLERLARREERRQKRLQEALERQKEFDPTI REERRQKRLQEALERQKEFDPTITDASLSL R L Q E R Q 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 857.46068 E9PGZ1;E7EX44;Q05682;C9J813;C9JEK3 E9PGZ1 105 111 CALD1 Caldesmon yes no 2 0.0017134 110.63 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.90488 0.85158 23.604 4 Median 1.1887 1.1813 NaN 1 0 Median 0.84246 0.73427 NaN 1 0 Median 0.96072 0.98764 NaN 1 0 Median 0.85229 0.73027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10669000 5265400 5403700 1111700 467690 643980 1886800 1004800 882050 6923200 3396400 3526800 747460 396550 350900 0 0 0 0 0 0 22213 928 23171 117239;117240;117241;117242 118344;118345;118346 118345 3 LQEALGMHESK CFLPGWQEIKGVQQRLQEALGMHESKYLIL VQQRLQEALGMHESKYLILPVHSNIPMMDQ R L Q S K Y 1 0 0 0 0 1 2 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 11 0 1241.6074 H7BXY3;Q7L2E3 H7BXY3 660 670 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2;3 0.00067656 64.82 By MS/MS 2 1.2564 1.1054 14.493 2 Median NaN NaN NaN 0 0 Median 1.2564 1.1054 14.493 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3897700 1575500 2322200 0 0 0 3897700 1575500 2322200 0 0 0 0 0 0 0 0 0 0 0 0 22214 1244 23172 117243;117244 118347;118348 118347 2 LQEALNLFK SSYNMVIREDNQTNRLQEALNLFKSIWNNR DNQTNRLQEALNLFKSIWNNRWLRTISVIL R L Q F K S 1 0 1 0 0 1 1 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1074.6073 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6 Q5JWF2 909 917 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 0.003417 65.252 By MS/MS By MS/MS By matching By MS/MS 1 2 1 3 1.4724 1.3028 20.773 7 Median 1.0958 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3931 1.4081 10.995 2 0 Median 1.5332 1.2876 NaN 1 0 Median 1.5833 1.5142 28.908 3 0 Median NaN NaN NaN 0 0 Median 38666000 16386000 22280000 12435000 5946700 6488500 0 0 0 14872000 5955900 8916500 764500 290960 473540 10594000 4192300 6401800 0 0 0 22215 2616 23173 117245;117246;117247;117248;117249;117250;117251 118349;118350;118351;118352;118353 118351 5 LQEAQLYKEEGNQR ______________________________ RLQEAQLYKEEGNQRYREGKYRDAVSRYHR R L Q Q R Y 1 1 1 0 0 3 3 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 14 1 1704.8431 Q8N5M4;E7EST3;E9PKV8 Q8N5M4 5 18 TTC9C Tetratricopeptide repeat protein 9C yes no 3 0.00018638 66.533 By MS/MS By MS/MS By matching 2 2 1 1.1028 0.97307 42.548 5 Median 1.2564 1.2826 20.418 2 1 Median 0.92907 0.84573 19.834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45846 0.48405 NaN 1 0 Median NaN NaN NaN 0 0 Median 12947000 6483200 6463600 6078600 2549000 3529600 4291200 2148600 2142600 0 0 0 0 0 0 2577000 1785700 791340 0 0 0 22216 3382 23174 117252;117253;117254;117255;117256 118354;118355;118356;118357 118356 4 LQEAQMQQGPEAHKEPPAPSQGPGGK CEDKRRQDEEEAQVKLQEAQMQQGPEAHKE AHKEPPAPSQGPGGKQNEDLQVKVQDITMQ K L Q G K Q 3 0 0 0 0 5 3 4 1 0 1 2 1 0 5 1 0 0 0 0 0 0 26 1 2696.2977 Q53GS7 Q53GS7 348 373 GLE1 Nucleoporin GLE1 yes yes 4 0.0059545 24.096 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.52365 0.5992 15.582 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45942 0.52339 19.129 2 0 Median 0.71997 0.70334 NaN 1 0 Median 0.52012 0.58266 NaN 1 1 Median 0.67373 0.61041 NaN 1 0 Median 10479000 6410700 4068400 0 0 0 0 0 0 5372600 3194800 2177800 1136000 706400 429640 3298100 2084400 1213700 672230 424980 247250 22217 3031 23175 117257;117258;117259;117260;117261 118358;118359;118360;118361;118362 118360 5 LQEDEMR QRRRQGQELSAARQRLQEDEMRRAAEERRR ELSAARQRLQEDEMRRAAEERRREKAEELA R L Q M R R 0 1 0 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 7 0 919.40693 E9PJ81;E9PRQ7;Q04323;A0A087WTZ5 E9PJ81 138 144 UBXN1 UBX domain-containing protein 1 yes no 2 0.01522 72.138 By MS/MS 1 1.1103 0.9618 NaN 1 Median NaN NaN NaN 0 0 Median 1.1103 0.9618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 870820 364500 506320 0 0 0 870820 364500 506320 0 0 0 0 0 0 0 0 0 0 0 0 22218 942 23176 117262 118363 118363 1 LQEDKEQMAQQLAEETQGFQR LLQQQKELAQEQARRLQEDKEQMAQQLAEE QMAQQLAEETQGFQRTLEAERQRQLEMSAE R L Q Q R T 2 1 0 1 0 6 4 1 0 0 2 1 1 1 0 0 1 0 0 0 0 0 21 1 2506.1758 Q15149 Q15149 2483 2503 PLEC Plectin yes yes 3 3.3415E-80 181.4 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.2527 1.1675 19 6 Median 1.1122 1.1633 NaN 1 1 Median 1.3834 1.3137 17.332 2 0 Median 0.93259 1.08 NaN 1 0 Median 1.2579 1.1717 NaN 1 0 Median 1.5617 1.7653 NaN 1 0 Median NaN NaN NaN 0 0 Median 37189000 17138000 20051000 21198000 9813100 11385000 5761600 2650200 3111400 6001900 3010100 2991800 485350 242130 243220 3742900 1422700 2320200 0 0 0 22219 2933 23177 117263;117264;117265;117266;117267;117268 118364;118365;118366;118367 118364 4 LQEDMQNVLQR SRGSLNEQIALVLMRLQEDMQNVLQRLQKL VLMRLQEDMQNVLQRLQKLETLTALQAKSS R L Q Q R L 0 1 1 1 0 3 1 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 11 0 1372.6769 B7Z2R7;Q5T8D3 B7Z2R7 445 455 ACBD5 Acyl-CoA-binding domain-containing protein 5 yes no 2 0.00021058 99.442 By MS/MS By MS/MS 1 1 1.2599 1.1467 2.129 2 Median 1.1714 1.1641 NaN 1 0 Median 1.3552 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5185000 2511100 2673900 4329800 2158800 2170900 855210 352270 502940 0 0 0 0 0 0 0 0 0 0 0 0 22220 631 23178 117269;117270 118368;118369;118370 118368 3 LQEDPNYSPQR QESYRQQLRSDIQKRLQEDPNYSPQRFPNA IQKRLQEDPNYSPQRFPNAQRAFADDP___ R L Q Q R F 0 1 1 1 0 2 1 0 0 0 1 0 0 0 2 1 0 0 1 0 0 0 11 0 1345.6262 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;H0Y710;H0Y4L1 P46379 1110 1120 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0028345 75.378 By MS/MS 1 1.2785 1.0745 NaN 1 Median NaN NaN NaN 0 0 Median 1.2785 1.0745 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6611000 2592500 4018500 0 0 0 6611000 2592500 4018500 0 0 0 0 0 0 0 0 0 0 0 0 22221 8 23179 117271 118371 118371 1 LQEDPNYSPQRFPNAQR QESYRQQLRSDIQKRLQEDPNYSPQRFPNA EDPNYSPQRFPNAQRAFADDP_________ R L Q Q R A 1 2 2 1 0 3 1 0 0 0 1 0 0 1 3 1 0 0 1 0 0 0 17 1 2058.9872 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;H0Y710;H0Y4L1 P46379 1110 1126 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3 0.015177 21.534 By MS/MS 1 0.7992 0.88793 NaN 1 Median 0.7992 0.88793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4726300 2569400 2156900 4726300 2569400 2156900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22222 8 23180 117272 118372 118372 1 LQEEEQKKEELAR AEVEAQKAQQLEEARLQEEEQKKEELARLR ARLQEEEQKKEELARLRRELVHKANPIRKY R L Q A R L 1 1 0 0 0 2 5 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 13 2 1628.837 Q9ULW0 Q9ULW0 694 706 TPX2 Targeting protein for Xklp2 yes yes 3 0.034796 20.381 By MS/MS By matching By matching 2 1 1 0.97655 1.1028 9.7367 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0095 1.2033 12.505 2 0 Median 0.98742 1.0554 NaN 1 0 Median 0.93691 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median 2242800 1054000 1188800 0 0 0 0 0 0 1452400 673710 778710 176240 99820 76418 614110 280470 333640 0 0 0 22223 4330 23181 117273;117274;117275;117276 118373 118373 1 LQEEHSLQDVIFK QQKEWQRMLQLIQSRLQEEHSLQDVIFKSA SRLQEEHSLQDVIFKSAFKSTSTALPPRED R L Q F K S 0 0 0 1 0 2 2 0 1 1 2 1 0 1 0 1 0 0 0 1 0 0 13 0 1584.8148 A0A087WU02;Q96RQ1;F8W0R1;F8VR88;F8VUZ2;F8VPA6 A0A087WU02 143 155 ERGIC2 Endoplasmic reticulum-Golgi intermediate compartment protein 2 yes no 2;3 0.0010698 59.84 By MS/MS By matching 2 1 1.44 1.2649 39.881 3 Median 1.186 1.183 56.135 2 0 Median 1.44 1.2649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14248000 7060300 7187900 12915000 6400000 6515100 1333100 660280 672850 0 0 0 0 0 0 0 0 0 0 0 0 22224 21 23182 117277;117278;117279 118374;118375 118375 2 LQEEINEVK MEQLKSFQIIAHLKRLQEEINEVKTWSNRI IAHLKRLQEEINEVKTWSNRITEKQDILNN R L Q V K T 0 0 1 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1100.5714 Q70UQ0 Q70UQ0 122 130 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 0.051234 30.687 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 1 1 1.1193 0.95518 12.168 5 Median 1.1481 1.0786 NaN 1 0 Median 1.0514 0.89159 9.7435 2 0 Median 0.83302 0.92943 NaN 1 0 Median 1.3363 1.1283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8902600 3981600 4921000 2873400 1300200 1573200 2984100 1268300 1715800 1234800 603200 631600 1601100 672180 928890 0 0 0 209210 137710 71496 22225 3208 23183 117280;117281;117282;117283;117284;117285 118376;118377;118378 118378 3 LQEEITK INQEVKYLFTGLKLRLQEEITKQSPTLQRN LFTGLKLRLQEEITKQSPTLQRNALYIKSS R L Q T K Q 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 7 0 859.4651 A6NJA2;P54578;H0YA47 A6NJA2 248 254 USP14;RUFY1 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.033497 81.784 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22226 523 23184 117286 118379 118379 1 LQEEIVNSVK EAKKENISKEEERKKLQEEIVNSVKGCGNC EERKKLQEEIVNSVKGCGNCSC________ K L Q V K G 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1157.6292 O75027;A0A590UJS8;A0A087WW65 O75027 736 745 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 1.9943E-05 147.2 By MS/MS By MS/MS 2 2 1.4688 1.3077 36.582 4 Median 1.4231 1.5993 58.448 2 0 Median 1.4688 1.3077 13.9 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48646000 19890000 28757000 15684000 7281600 8402700 32962000 12608000 20354000 0 0 0 0 0 0 0 0 0 0 0 0 22227 1642 23185 117287;117288;117289;117290 118380;118381;118382;118383 118382 4 LQEELAASDR ESEKRLKGLEAEVLRLQEELAASDRARRQA AEVLRLQEELAASDRARRQAQQDRDEMADE R L Q D R A 2 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1130.5568 Q7Z406;A1L2Z2 Q7Z406 1709 1718 MYH14 Myosin-14 yes no 2 0.0012653 85.731 By MS/MS By MS/MS 1 1 1.0643 0.98229 8.2618 2 Median 1.0372 1.0414 NaN 1 0 Median 1.0921 0.92655 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4788600 2137100 2651500 1704200 763570 940630 3084400 1373500 1710900 0 0 0 0 0 0 0 0 0 0 0 0 22228 3242 23186 117291;117292 118384;118385 118385 2 LQEELSENDKK RSAEELKEMQDKVIKLQEELSENDKKIKAL KVIKLQEELSENDKKIKALNHEIEELEKRK K L Q K K I 0 0 1 1 0 1 3 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 11 1 1331.6569 O95347;Q5T821 O95347 263 273 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 7.135E-05 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 4 1 1.1204 1.1601 29.019 13 Median 1.0765 1.1386 2.6548 2 0 Median 1.074 0.99878 0.64976 2 0 Median 1.1291 1.2927 1.1411 2 0 Median 1.1357 1.0818 0.3614 2 0 Median 1.1753 1.2497 10.441 4 0 Median 0.5186 0.44907 NaN 1 0 Median 34266000 15609000 18657000 4008400 1872500 2135800 12230000 5444900 6785500 7475500 3495200 3980300 5895100 2651100 3244000 4424200 1993900 2430300 232620 151220 81401 22229 1766 23187 117293;117294;117295;117296;117297;117298;117299;117300;117301;117302;117303;117304;117305 118386;118387;118388;118389;118390;118391;118392;118393;118394;118395;118396;118397;118398;118399;118400 118394 15 LQEEMLQR ERDNLAEDIMRLREKLQEEMLQREEAENTL IMRLREKLQEEMLQREEAENTLQSFRQDVD K L Q Q R E 0 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1045.5226 P08670;B0YJC4;B0YJC5 P08670 189 196 VIM Vimentin yes no 2 2.0631E-06 162.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 5 1.1984 1.0537 17.907 11 Median 0.86105 0.81816 NaN 1 0 Median 1.3325 1.1158 NaN 1 0 Median 1.1758 1.1806 10.197 2 0 Median 1.2555 1.0782 3.2454 2 1 Median 1.1984 1.1923 NaN 1 0 Median 0.99255 0.81142 10.332 4 1 Median 164950000 75019000 89929000 15527000 7913800 7613400 51991000 21747000 30243000 16659000 7424000 9235200 21069000 9245700 11823000 24047000 11123000 12924000 35656000 17566000 18090000 22230 1907 23188 117306;117307;117308;117309;117310;117311;117312;117313;117314;117315;117316;117317 118401;118402;118403;118404;118405;118406;118407;118408;118409;118410;118411;118412;118413;118414;118415;118416;118417 118409 17 LQEEMLQREEAENTLQSFR ERDNLAEDIMRLREKLQEEMLQREEAENTL MLQREEAENTLQSFRQDVDNASLARLDLER K L Q F R Q 1 2 1 0 0 3 5 0 0 0 3 0 1 1 0 1 1 0 0 0 0 0 19 1 2350.1223 P08670;B0YJC4;B0YJC5 P08670 189 207 VIM Vimentin yes no 3 1.8436E-18 143.71 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 4 1 1.1421 1.2214 17.255 8 Median 0.9619 0.97137 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1449 1.2396 NaN 1 0 Median 1.2414 1.158 NaN 1 0 Median 1.1678 1.2711 4.7975 4 3 Median 0.90973 0.80429 NaN 1 0 Median 240230000 109720000 130510000 73428000 34764000 38664000 0 0 0 13136000 5586300 7549400 2995200 1305900 1689400 146170000 65759000 80415000 4497800 2309600 2188100 22231 1907 23189;23190 117318;117319;117320;117321;117322;117323;117324;117325 118418;118419;118420;118421;118422;118423;118424;118425;118426 118421 678 9 LQEGDKILSVNGQDLK VSRIKENGAAALDGRLQEGDKILSVNGQDL QEGDKILSVNGQDLKNLLHQDAVDLFRNAG R L Q L K N 0 0 1 2 0 2 1 2 0 1 3 2 0 0 0 1 0 0 0 1 0 0 16 1 1755.9367 P57105 P57105 59 74 SYNJ2BP Synaptojanin-2-binding protein no no 3 0.0010729 35.757 By matching By MS/MS 1 1 1.0043 0.90491 15.657 2 Median 0.86503 0.81007 NaN 1 0 Median 1.166 1.0109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3944000 1753800 2190200 1245500 612700 632810 2698500 1141100 1557400 0 0 0 0 0 0 0 0 0 0 0 0 22232 2517 23191 117326;117327 118427 118427 1 LQEKEDLQELNDR AQASSTPLSPTRITRLQEKEDLQELNDRLA TRLQEKEDLQELNDRLAVYIDRVRSLETEN R L Q D R L 0 1 1 2 0 2 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1628.8006 P02545;Q3BDU5 P02545 29 41 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 1.5364E-39 215.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 9 5 7 1.1338 1.0806 22.006 26 Median 1.8718 1.8698 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1019 1.2044 9.7125 4 0 Median 1.146 1.0754 29.441 9 5 Median 0.89633 0.93871 10.536 5 0 Median 1.2306 1.0858 9.4383 7 2 Median 1132800000 523700000 609110000 4308200 1317500 2990700 0 0 0 200320000 91814000 108510000 243000000 97705000 145300000 559520000 277310000 282220000 125660000 55554000 70101000 22233 1834;3010 23192 117328;117329;117330;117331;117332;117333;117334;117335;117336;117337;117338;117339;117340;117341;117342;117343;117344;117345;117346;117347;117348;117349;117350;117351;117352;117353 118428;118429;118430;118431;118432;118433;118434;118435;118436;118437;118438;118439;118440;118441;118442;118443;118444;118445;118446;118447;118448;118449;118450;118451;118452;118453;118454;118455;118456;118457;118458;118459;118460;118461;118462;118463;118464;118465;118466;118467;118468 118457 41 LQEKEELR AGGPTTPLSPTRLSRLQEKEELRELNDRLA SPTRLSRLQEKEELRELNDRLAVYIDKVRS R L Q L R E 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1043.5611 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5;Q03252 P20700 30 37 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.011483 119.29 By MS/MS By matching By MS/MS By matching 1 1 5 5 1.045 1.0318 32.965 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94081 1.0004 NaN 1 0 Median 1.4459 1.3258 NaN 1 0 Median 0.83122 0.88289 33.829 5 0 Plateau 1.4147 1.2699 10.883 5 0 Median 50187000 25908000 24279000 0 0 0 0 0 0 18456000 9477200 8978300 526800 235670 291130 28275000 14860000 13415000 2929500 1335300 1594200 22234 2084;2709 23193 117354;117355;117356;117357;117358;117359;117360;117361;117362;117363;117364;117365 118469;118470;118471;118472;118473;118474 118470 6 LQEKEELRELNDR AGGPTTPLSPTRLSRLQEKEELRELNDRLA SRLQEKEELRELNDRLAVYIDKVRSLETEN R L Q D R L 0 2 1 1 0 1 4 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 13 2 1670.8588 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5;Q03252 P20700 30 42 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2;3;4 1.8728E-07 157.03 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 10 6 0.93786 1.0444 25.639 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97612 1.0951 5.0771 2 1 Median 2.0927 2.2295 16.19 2 0 Median 0.85288 0.97439 6.1358 10 0 Median 1.3882 1.2038 4.3683 6 0 Median 659480000 328710000 330770000 0 0 0 0 0 0 14998000 6923700 8074500 17105000 4662800 12442000 550890000 287080000 263810000 76495000 30046000 46449000 22235 2084;2709 23194 117366;117367;117368;117369;117370;117371;117372;117373;117374;117375;117376;117377;117378;117379;117380;117381;117382;117383;117384;117385 118475;118476;118477;118478;118479;118480;118481;118482;118483;118484;118485;118486;118487;118488;118489;118490;118491;118492;118493;118494;118495;118496;118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509 118507 35 LQELEANPPSDVYLSSR EYDELAETQGKLEEKLQELEANPPSDVYLS ELEANPPSDVYLSSRDRQILDWHFANLEFA K L Q S R D 1 1 1 1 0 1 2 0 0 0 3 0 0 0 2 3 0 0 1 1 0 0 17 0 1916.948 O60341 O60341 508 524 KDM1A Lysine-specific histone demethylase 1A yes yes 2;3 2.5619E-12 150.12 By MS/MS By MS/MS 1 3 0.66148 0.68308 18.655 3 Median 0.69957 0.68308 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.52596 0.59287 23.712 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29104000 19537000 9567100 2865900 1749200 1116700 0 0 0 26238000 17788000 8450500 0 0 0 0 0 0 0 0 0 22236 1613 23195 117386;117387;117388;117389 118510;118511;118512;118513;118514 118513 5 LQELEGAVK ARQQLERQNKELKAKLQELEGAVKSKFKAT KELKAKLQELEGAVKSKFKATISALEAKIG K L Q V K S 1 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 985.54441 P35580 P35580 1801 1809 MYH10 Myosin-10 yes yes 2 0.00024349 126.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2183 1.0793 29.245 5 Median NaN NaN NaN 0 0 Median 1.2183 1.0793 NaN 1 0 Median 0.98851 1.0361 52.001 2 1 Median NaN NaN NaN 0 0 Median 0.77229 0.80935 NaN 1 0 Median 1.3435 1.151 NaN 1 1 Median 31916000 15567000 16349000 0 0 0 13192000 5962400 7230000 8463800 4739500 3724300 0 0 0 5375500 2832000 2543500 4884600 2033000 2851600 22237 2245 23196 117390;117391;117392;117393;117394 118515;118516;118517;118518;118519 118519 4 LQELEGQIADLK KDANQAKLSERRRKRLQELEGQIADLKKKL RKRLQELEGQIADLKKKLNEQSKLLKLKES R L Q L K K 1 0 0 1 0 2 2 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1355.7296 O95239 O95239 602 613 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 4.5969E-06 120.09 By MS/MS By MS/MS By matching 1 2 1 0.9583 0.83377 31.222 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0171 1.0862 NaN 1 0 Median 0.79037 0.69691 39.686 2 0 Median NaN NaN NaN 0 0 Median 0.90288 0.75343 NaN 1 0 Median 16837000 8502000 8335300 0 0 0 0 0 0 12701000 6221400 6480000 3509100 1942400 1566800 0 0 0 626790 338250 288540 22238 1757 23197 117395;117396;117397;117398 118520;118521;118522;118523 118521 4 LQELEGQIADLKK KDANQAKLSERRRKRLQELEGQIADLKKKL KRLQELEGQIADLKKKLNEQSKLLKLKEST R L Q K K K 1 0 0 1 0 2 2 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 13 1 1483.8246 O95239 O95239 602 614 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 1.9286E-07 112.44 By MS/MS By MS/MS By matching 1 2 1 1.3474 1.3387 11.469 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1481 1.3375 NaN 1 0 Median 1.3993 1.3498 19.847 2 0 Median NaN NaN NaN 0 0 Median 1.4742 1.34 NaN 1 0 Median 27226000 12815000 14411000 0 0 0 0 0 0 22913000 10820000 12094000 3958700 1848300 2110300 0 0 0 353480 146800 206680 22239 1757 23198 117399;117400;117401;117402 118524;118525;118526;118527 118525 4 LQELEKYPGIQTR REGAKVIATDINESKLQELEKYPGIQTRVL SKLQELEKYPGIQTRVLDVTKKKQIDQFAN K L Q T R V 0 1 0 0 0 2 2 1 0 1 2 1 0 0 1 0 1 0 1 0 0 0 13 1 1573.8464 Q9BUT1;D6RFG2;D6R9U8;D6RIR6 Q9BUT1 43 55 BDH2 3-hydroxybutyrate dehydrogenase type 2 yes no 3 0.00031619 61.167 By MS/MS By MS/MS 1 1 1.18 1.1604 35.183 2 Median 0.86848 0.90482 NaN 1 0 Median 1.6033 1.4882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31285000 15569000 15716000 26116000 13478000 12638000 5169300 2091400 3077900 0 0 0 0 0 0 0 0 0 0 0 0 22240 3843 23199 117403;117404 118528;118529;118530 118528 3 LQELIQK LDNLVKHLHSIMVLKLQELIQKGTKLVLEQ LHSIMVLKLQELIQKGTKLVLEQVVTSIAS K L Q Q K G 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 870.51747 O00410;H0Y8C6 O00410 497 503 IPO5 Importin-5 yes no 2 3.3549E-11 181.2 By matching By MS/MS 1 2 1.1879 1.0055 12.889 3 Median 1.2332 1.2363 NaN 1 0 Median 1.1341 0.99046 2.1245 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13402000 5574500 7828000 1755200 704330 1050900 11647000 4870100 6777100 0 0 0 0 0 0 0 0 0 0 0 0 22241 1460 23200 117405;117406;117407 118531;118532 118532 2 LQELNYNLK KTGVQFTVKLRLLVKLQELNYNLKVKVLFD LRLLVKLQELNYNLKVKVLFDKDVNERNTV K L Q L K V 0 0 2 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 9 0 1133.6081 P42224;J3KPM9 P42224 351 359 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.016192 42.869 By MS/MS By matching 2 1 1.3675 1.2907 2.4143 3 Median 1.3245 1.2646 2.8845 2 0 Median 1.4649 1.2933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10749000 4547000 6202400 8371400 3583500 4787900 2378000 963520 1414400 0 0 0 0 0 0 0 0 0 0 0 0 22242 2308 23201 117408;117409;117410 118533 118533 1 LQELPDAVPHGEMPR IMPDKCKCVDFQTLKLQELPDAVPHGEMPR LQELPDAVPHGEMPRHMQLYCDRYLCDKVV K L Q P R H 1 1 0 1 0 1 2 1 1 0 2 0 1 0 3 0 0 0 0 1 0 0 15 0 1687.8352 P33992;B1AHB1;B1AHB2 P33992 229 243 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 9.7959E-05 58.723 By MS/MS By MS/MS By matching 5 1 1 0.71254 0.65486 27.835 6 Median 0.5989 0.57524 31.115 4 1 Median 0.77679 0.67264 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99943 0.8612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62337000 37128000 25209000 55411000 33621000 21791000 4695800 2374800 2320900 0 0 0 2229900 1132400 1097500 0 0 0 0 0 0 22243 2224 23202 117411;117412;117413;117414;117415;117416;117417 118534;118535;118536;118537;118538;118539;118540 118537 7 LQELSAEER PGALVIPFSGALELKLQELSAEERQKYLEA GALELKLQELSAEERQKYLEANMTQSALPK K L Q E R Q 1 1 0 0 0 1 3 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1073.5353 J3KQ32;Q9NTK5 J3KQ32 291 299 OLA1 Obg-like ATPase 1 yes no 2 0.00039972 133.23 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1.0297 0.94125 12.181 6 Median 1.0467 1.0505 NaN 1 0 Median 1.0531 0.91536 8.8397 2 1 Median 1.013 1.0214 NaN 1 0 Median 0.9509 0.82996 12.9 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21084000 10089000 10996000 2420700 1273100 1147600 11237000 5390600 5846200 2460100 1223100 1237000 4966800 2201700 2765100 0 0 0 0 0 0 22244 1315 23203 117418;117419;117420;117421;117422;117423 118541;118542;118543;118544;118545;118546;118547 118545 7 LQELTDLLQEK AVQELNSFLAQENMRLQELTDLLQEKHRTM ENMRLQELTDLLQEKHRTMSQEFSKLQSKV R L Q E K H 0 0 0 1 0 2 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 11 0 1328.7187 Q5VTR2 Q5VTR2 232 242 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.0001469 83.883 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.0022 1.0086 3.4784 5 Median 1.0022 0.99274 NaN 1 0 Median 1.109 0.9679 NaN 1 0 Median 0.98682 1.0482 0.14444 2 0 Median 1.1811 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20230000 10165000 10066000 2785400 1329000 1456400 2758900 1243800 1515100 12158000 6458700 5699000 2528300 1133200 1395100 0 0 0 0 0 0 22245 3112 23204 117424;117425;117426;117427;117428 118548;118549;118550;118551 118551 4 LQEMEGTVK ARQQLERQNKELKVKLQEMEGTVKSKYKAS KELKVKLQEMEGTVKSKYKASITALEAKIA K L Q V K S 0 0 0 0 0 1 2 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1033.5114 P35579 P35579 1794 1802 MYH9 Myosin-9 yes yes 2 0.00062526 108.74 By MS/MS By MS/MS By MS/MS 1 2 1 1.362 1.2865 17.24 4 Median 1.4267 1.3697 NaN 1 0 Median 1.2536 1.0951 13.921 2 0 Median 1.3233 1.4707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37115000 17388000 19726000 5229100 2533600 2695600 30058000 14012000 16045000 1827500 842440 985090 0 0 0 0 0 0 0 0 0 22246 2244 23205 117429;117430;117431;117432 118552;118553;118554;118555;118556 118555 5 LQENLQQLQHSTNQLAK KNLMSQLGTKQDSSKLQENLQQLQHSTNQL ENLQQLQHSTNQLAKETNELLKELGSLPLP K L Q A K E 1 0 2 0 0 5 1 0 1 0 4 1 0 0 0 1 1 0 0 0 0 0 17 0 1992.0389 B1AJQ6;Q86Y82 B1AJQ6 59 75 STX12 Syntaxin-12 yes no 2;3 2.1562E-77 242.8 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.1584 1.1098 15.803 7 Median 1.1231 1.0176 4.6494 2 0 Median 1.3334 1.1276 21.929 3 0 Median 1.156 1.1098 NaN 1 0 Median 1.5205 1.2966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147910000 68224000 79690000 124870000 57692000 67179000 15866000 6992600 8873100 6310200 3210300 3099900 867620 329330 538290 0 0 0 0 0 0 22247 563 23206 117433;117434;117435;117436;117437;117438;117439 118557;118558;118559;118560;118561;118562;118563 118559 7 LQEPPASAVR GSRLGNSLLLKYTEKLQEPPASAVREAADK KYTEKLQEPPASAVREAADKEEPPSKKKRV K L Q V R E 2 1 0 0 0 1 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1066.5771 Q10570 Q10570 400 409 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0011606 67.993 By matching By MS/MS By MS/MS 1 2 1 0.66115 0.72893 14.125 4 Median NaN NaN NaN 0 0 Median 0.65389 0.55428 NaN 1 0 Median 0.66115 0.72893 0.83661 2 0 Median 0.84751 0.74576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8152200 4742000 3410100 0 0 0 2336500 1569900 766620 4597100 2624700 1972400 1218500 547390 671090 0 0 0 0 0 0 22248 2753 23207 117440;117441;117442;117443 118564;118565;118566;118567 118565 4 LQEPTPSSGDPGEHDPASTHK STIDLKNELKQCIGRLQEPTPSSGDPGEHD SSGDPGEHDPASTHKSTRPVKKVSKEEKKS R L Q H K S 1 0 0 2 0 1 2 2 2 0 1 1 0 0 4 3 2 0 0 0 0 0 21 0 2185.9876 Q14258;A0A3B3IUA7 Q14258 355 375 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 3;4 0.034467 11.956 By matching By MS/MS By MS/MS 1 2 2 0.68752 0.59109 12.38 5 Median 0.55689 0.5519 NaN 1 0 Median 0.7724 0.67138 18.099 2 0 Median NaN NaN NaN 0 0 Median 0.70062 0.60233 2.666 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7073500 3962300 3111200 1400000 837300 562700 4136500 2261700 1874800 0 0 0 1537000 863240 673750 0 0 0 0 0 0 22249 2870 23208 117444;117445;117446;117447;117448 118568;118569;118570;118571 118568 4 LQEQFDEQSKENENIGDQLR HLREELKQQKDDYNRLQEQFDEQSKENENI DEQSKENENIGDQLRQLQIQVRESIDGKLP R L Q L R Q 0 1 2 2 0 4 4 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 20 1 2419.1252 Q14789;E7EU81 Q14789 1215 1234 GOLGB1 Golgin subfamily B member 1 yes no 3 3.1879E-19 114.4 By MS/MS By MS/MS 1 1 1.1083 1.092 6.4273 2 Median 1.091 1.1428 NaN 1 0 Median 1.1259 1.0435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34634000 15721000 18913000 24011000 10969000 13042000 10623000 4752100 5871300 0 0 0 0 0 0 0 0 0 0 0 0 22250 2900 23209 117449;117450 118572;118573;118574;118575 118572 4 LQEQVTDLR EKAENEKIQNEQLEKLQEQVTDLRSQNTKI NEQLEKLQEQVTDLRSQNTKISTQLDFASK K L Q L R S 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1100.5826 P12270 P12270 700 708 TPR Nucleoprotein TPR yes yes 2 2.456E-05 155.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 1 1.1299 1.0176 11.658 11 Median 0.96469 0.93382 0.72633 2 0 Median 1.1926 0.96456 15.913 3 0 Median 0.98487 1.0547 5.0663 2 0 Median 1.295 1.136 14.376 2 0 Median 0.96452 1.0002 NaN 1 0 Median 1.4514 1.1998 NaN 1 0 Median 151830000 74040000 77789000 14480000 7707000 6773300 38033000 17419000 20613000 61709000 32065000 29644000 20597000 9251900 11345000 7034100 3434400 3599700 9977100 4163000 5814100 22251 1978 23210 117451;117452;117453;117454;117455;117456;117457;117458;117459;117460;117461 118576;118577;118578;118579;118580;118581;118582;118583;118584;118585;118586;118587;118588;118589;118590;118591;118592;118593 118581 17 LQESIEYEDLGK SGDADCFQPAVKRAKLQESIEYEDLGKNNS RAKLQESIEYEDLGKNNSVKTIALNLKKSD K L Q G K N 0 0 0 1 0 1 3 1 0 1 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1422.6878 P32780;E9PM51 P32780 354 365 GTF2H1 General transcription factor IIH subunit 1 yes no 2 7.8353E-05 93.096 By MS/MS 1 0.63436 0.61617 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63436 0.61617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12503000 7524800 4977700 0 0 0 0 0 0 12503000 7524800 4977700 0 0 0 0 0 0 0 0 0 22252 2219 23211 117462 118594;118595 118594 2 LQESPEDMPAGQTPHTVILFAHNDLVDK LIHNRSLFSDKQMIKLQESPEDMPAGQTPH PHTVILFAHNDLVDKVQPGDRVNVTGIYRA K L Q D K V 2 0 1 3 0 2 2 1 2 1 3 1 1 1 3 1 2 0 0 2 0 0 28 0 3101.5128 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3ITP6 A0A3B3IU45 304 331 MCM4 DNA replication licensing factor MCM4 yes no 4 2.7055E-05 31.632 By MS/MS 1 0.4472 0.49184 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4472 0.49184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6141500 4210000 1931500 0 0 0 0 0 0 6141500 4210000 1931500 0 0 0 0 0 0 0 0 0 22253 441 23212 117463 118596 118596 1 LQESVMEASR QRDVIDEPIIEEPSRLQESVMEASRTNIDE EEPSRLQESVMEASRTNIDESAMPPPPPQG R L Q S R T 1 1 0 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1148.5496 O60216 O60216 451 460 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 0.0172 54.416 By MS/MS By MS/MS 1 1 1.5736 1.4201 24.843 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6924 1.6928 NaN 1 1 Median 1.4632 1.1913 NaN 1 1 Median 14544000 6029400 8514900 0 0 0 0 0 0 0 0 0 0 0 0 9429700 3861300 5568400 5114700 2168200 2946500 22254 1603 23213 117464;117465 118597;118598 118597 2 LQETEMMDPELDYTLMR NKKQLSTRCHQKVFKLQETEMMDPELDYTL ETEMMDPELDYTLMRVCKQMIKRFCPEADS K L Q M R V 0 1 0 2 0 1 3 0 0 0 3 0 3 0 1 0 2 0 1 0 0 0 17 0 2113.937 Q92896 Q92896 866 882 GLG1 Golgi apparatus protein 1 yes yes 2 0.04256 22.198 By MS/MS 1 0.79795 0.8589 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79795 0.8589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 913710 459890 453810 0 0 0 0 0 0 913710 459890 453810 0 0 0 0 0 0 0 0 0 22255 3563 23214 117466 118599 118599 1 LQETLSAADR ______________________________ CSLLRLQETLSAADRCGAALAGHQLIRGLG R L Q D R C 2 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1102.5619 P78527 P78527 15 24 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00030451 125.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 3 1.0866 1.0269 22.377 13 Median 0.74643 0.73619 2.248 2 0 Median 1.3095 1.0801 7.1465 2 0 Median 0.98025 1.0503 12.495 2 1 Median 1.2626 1.1054 7.7222 2 0 Median 0.98326 1.0272 15.49 2 1 Median 1.1162 0.90654 35.921 3 1 Median 130890000 60517000 70368000 14703000 7340900 7361800 55015000 23216000 31799000 32447000 16779000 15668000 8340500 3729200 4611300 11537000 5713700 5823000 8843000 3737900 5105100 22256 2647 23215 117467;117468;117469;117470;117471;117472;117473;117474;117475;117476;117477;117478;117479 118600;118601;118602;118603;118604;118605;118606;118607;118608;118609;118610;118611;118612;118613;118614 118604 15 LQETSSQSYVEEQK YVDEENSDGETSNHRLQETSSQSYVEEQKQ RLQETSSQSYVEEQKQLKESFRAFVEDSED R L Q Q K Q 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 3 1 0 1 1 0 0 14 0 1654.7686 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 151 164 KRI1 Protein KRI1 homolog yes no 2 0.00048865 69.01 By matching By MS/MS By MS/MS 1 1 1 1.07 0.96561 4.2208 3 Median NaN NaN NaN 0 0 Median 1.07 0.96561 NaN 1 0 Median 0.85589 0.94002 NaN 1 0 Median 1.174 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5212600 2622100 2590600 0 0 0 769290 407060 362230 3392000 1669800 1722200 1051300 545200 506100 0 0 0 0 0 0 22257 463 23216 117480;117481;117482 118615;118616;118617 118616 3 LQETTLVANQLR TLNLRDLFSTFTITRLQETTLVANQLREAA ITRLQETTLVANQLREAASRLKWTTNTGPT R L Q L R E 1 1 1 0 0 2 1 0 0 0 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1384.7674 O00754;M0QZ24 O00754 951 962 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 2 3.6707E-06 111.65 By MS/MS By MS/MS 1 1 1.0376 0.94326 2.6772 2 Median 0.95461 0.92557 NaN 1 0 Median 1.1278 0.96129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50094000 24523000 25571000 25136000 12713000 12423000 24958000 11810000 13148000 0 0 0 0 0 0 0 0 0 0 0 0 22258 1477 23217 117483;117484 118618;118619;118620;118621 118618 4 LQEVDSLWK TSVGYAIFKVLNEKKLQEVDSLWKEFETPE VLNEKKLQEVDSLWKEFETPEKANKIVKLK K L Q W K E 0 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 0 1116.5815 Q9Y2X3;F8WED0 Q9Y2X3 22 30 NOP58 Nucleolar protein 58 yes no 2 0.0016231 79.474 By MS/MS By matching By MS/MS 1 1 1 1.1009 1.0686 17.763 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1009 1.0686 NaN 1 0 Median 1.3477 1.1556 NaN 1 0 Median 0.86298 0.82312 NaN 1 0 Median NaN NaN NaN 0 0 Median 24129000 12215000 11914000 0 0 0 0 0 0 14111000 7115100 6995700 1165900 479740 686150 8852400 4620100 4232400 0 0 0 22259 4396 23218 117485;117486;117487 118622;118623;118624;118625 118623 4 LQEVECEEQR MTIKMNESDIWFEEKLQEVECEEQRLRKLH WFEEKLQEVECEEQRLRKLHAVVETLVNHR K L Q Q R L 0 1 0 0 1 2 4 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1318.5823 Q13596;H0YK42 Q13596 313 322 SNX1 Sorting nexin-1 yes no 2 0.017044 38.086 By MS/MS 1 1.0495 0.90794 NaN 1 Median NaN NaN NaN 0 0 Median 1.0495 0.90794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2005300 831370 1173900 0 0 0 2005300 831370 1173900 0 0 0 0 0 0 0 0 0 0 0 0 22260 2829 23219 117488 118626 118626 1 LQEVEIR NARELQEQRDSLTQKLQEVEIRNKDLEGQL QRDSLTQKLQEVEIRNKDLEGQLSDLEQRL K L Q I R N 0 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 885.49198 Q86YM7;Q86YM6 Q86YM7 291 297 HOMER1 Homer protein homolog 1 no no 2 0.017757 64.803 By matching By MS/MS By matching 1 1 1 1.2563 1.1794 82.246 3 Median NaN NaN NaN 0 0 Median 4.2415 4.6993 NaN 1 0 Median 1.1126 1.1794 NaN 1 0 Median 1.2563 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2560400 1009300 1551200 0 0 0 805580 120430 685150 1208200 699120 509040 546690 189700 356990 0 0 0 0 0 0 22261 3307 23220 117489;117490;117491 118627;118628 118627 2 LQEVFGHAIK ERNKPTKNMINIISRLQEVFGHAIKAAYPD NIISRLQEVFGHAIKAAYPDLENPPLLVTP R L Q I K A 1 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1140.6291 P54136;E5RJM9;E5RH09 P54136 80 89 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.00038325 90.657 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.4011 1.1849 33.2 4 Median 1.0339 0.95855 NaN 1 0 Median 1.257 1.0485 NaN 1 0 Median 1.8973 2.0135 NaN 1 0 Median 1.5617 1.339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78057000 35818000 42239000 49828000 24116000 25712000 24765000 10522000 14243000 2293500 697050 1596500 1170900 483170 687710 0 0 0 0 0 0 22262 2480 23221 117492;117493;117494;117495 118629;118630;118631;118632 118631 4 LQEVIETLLSLEK DQRLPECAKLAKEGRLQEVIETLLSLEKQT GRLQEVIETLLSLEKQTRTASDMVSTSRIL R L Q E K Q 0 0 0 0 0 1 3 0 0 1 4 1 0 0 0 1 1 0 0 1 0 0 13 0 1513.8603 O00232 O00232 40 52 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 3.6591E-11 180.88 By MS/MS By MS/MS 2 1 1.372 1.3428 19.841 3 Median NaN NaN NaN 0 0 Median 1.337 1.1692 25.683 2 0 Median 1.372 1.3428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67121000 30082000 37038000 0 0 0 60542000 27357000 33185000 6578200 2725100 3853100 0 0 0 0 0 0 0 0 0 22263 1449 23222 117496;117497;117498 118633;118634;118635;118636 118635 4 LQEYLGK FLKYSKAKNLDIDPKLQEYLGKFRRLEDFR KNLDIDPKLQEYLGKFRRLEDFRVDPPMGE K L Q G K F 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 849.45962 Q6PKG0 Q6PKG0 1011 1017 LARP1 La-related protein 1 yes yes 2 0.016483 68.485 By MS/MS 1 0.964 0.82371 NaN 1 Median NaN NaN NaN 0 0 Median 0.964 0.82371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5012900 2394600 2618300 0 0 0 5012900 2394600 2618300 0 0 0 0 0 0 0 0 0 0 0 0 22264 3176 23223 117499 118637;118638 118637 2 LQFDVSSPNGILLFR VLKLMAELVHNRSQRLQFDVSSPNGILLFR LQFDVSSPNGILLFRETSKMITMYGNRILT R L Q F R E 0 1 1 1 0 1 0 1 0 1 3 0 0 2 1 2 0 0 0 1 0 0 15 0 1704.9199 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 787 801 XPO7 Exportin-7 yes no 2 0.00036103 58.676 By MS/MS By matching By matching 1 1 1 1.0795 1.0513 14.724 3 Median 0.83726 0.84142 NaN 1 0 Median 1.1901 1.0513 NaN 1 0 Median 1.0795 1.1114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2288800 1178400 1110400 1215400 644160 571220 851310 430990 420330 222080 103250 118830 0 0 0 0 0 0 0 0 0 22265 885 23224 117500;117501;117502 118639;118640 118640 2 LQFLFAK MRHQKRNVYHCNKCRLQFLFAKDKIEHKLQ VYHCNKCRLQFLFAKDKIEHKLQHHKTFRK R L Q A K D 1 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 0 865.50617 Q7Z3K3;H0YCT3 Q7Z3K3 654 660 POGZ Pogo transposable element with ZNF domain yes no 2 0.016513 68.398 By matching By MS/MS 1 2 1.0417 1.0949 10.592 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1908 1.2764 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0286 1.068 3.5254 2 0 Median NaN NaN NaN 0 0 Median 5281400 2337900 2943500 0 0 0 0 0 0 500610 253200 247410 0 0 0 4780800 2084700 2696000 0 0 0 22266 3241 23225 117503;117504;117505 118641 118641 1 LQFPLPTAQR VSLLTTSEGADEPQRLQFPLPTAQRSLEPG DEPQRLQFPLPTAQRSLEPGTPRWANYVKG R L Q Q R S 1 1 0 0 0 2 0 0 0 0 2 0 0 1 2 0 1 0 0 0 0 0 10 0 1169.6557 P51570;K7ERJ9;K7ERN9 P51570 88 97 GALK1 Galactokinase yes no 2 0.028205 48.283 By MS/MS 2 0.63278 0.63218 NaN 1 Median 0.63278 0.63218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18979000 11604000 7375200 18979000 11604000 7375200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22267 2434 23226 117506;117507 118642;118643;118644 118642 3 LQFQQQQNSIHAAK PPASRNADSGVHLNRLQFQQQQNSIHAAKQ RLQFQQQQNSIHAAKQLDMQSSWVYETGRL R L Q A K Q 2 0 1 0 0 5 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 14 0 1639.8431 Q6PJT7;H0YJA2;G3V256;G3V5I6;G3V3Y4;A0A3B3IT62 Q6PJT7 232 245 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 3 0.0045736 29.491 By MS/MS By matching By MS/MS 1 1 2 1.2881 1.2742 14.343 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99507 1.0957 NaN 1 1 Median 1.7057 1.4861 NaN 1 0 Median 1.2881 1.2742 12.361 2 0 Median NaN NaN NaN 0 0 Median 16913000 8325500 8587500 0 0 0 0 0 0 3930400 2021000 1909400 464080 171780 292300 12518000 6132700 6385800 0 0 0 22268 3175 23227 117508;117509;117510;117511 118645;118646;118647 118646 3 LQFRPPFEEIR NLPEINIDLTYKQGRLQFRPPFEEIRAKYY KQGRLQFRPPFEEIRAKYYREMKRFIGIPN R L Q I R A 0 2 0 0 0 1 2 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 11 1 1430.767 Q8NCM8;A0A3B3ISP9 Q8NCM8 786 796 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 3 0.0023332 42.629 By MS/MS By matching 1 1 0.38711 0.39068 30.602 2 Median 0.28956 0.31466 NaN 1 0 Median 0.51753 0.48506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9320600 6981100 2339500 8610700 6501300 2109400 709910 479820 230090 0 0 0 0 0 0 0 0 0 0 0 0 22269 3418 23228 117512;117513 118648;118649 118648 2 LQFSLKK KKKVVHRTATADDKKLQFSLKKLGVNNISG TATADDKKLQFSLKKLGVNNISGIEEVNMF K L Q K K L 0 0 0 0 0 1 0 0 0 0 2 2 0 1 0 1 0 0 0 0 0 0 7 1 862.52764 P20290 P20290 88 94 BTF3 Transcription factor BTF3 yes yes 2 0.011475 86.866 By matching By MS/MS By MS/MS 2 1 1 1.2561 1.2544 29.029 4 Median 1.4936 1.5072 36.127 2 0 Median 1.1119 0.98331 NaN 1 0 Median 1.3518 1.3478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21398000 9620400 11778000 8831300 4158600 4672700 5088700 2409100 2679600 7478100 3052700 4425400 0 0 0 0 0 0 0 0 0 22270 2076 23229 117514;117515;117516;117517 118650;118651;118652;118653 118653 4 LQGDANNLHGFEVDSR TRLSAYVSYGGLLMRLQGDANNLHGFEVDS QGDANNLHGFEVDSRVYLLMKKL_______ R L Q S R V 1 1 2 2 0 1 1 2 1 0 2 0 0 1 0 1 0 0 0 1 0 0 16 0 1770.8285 C9JLU1;P52434 C9JLU1 125 140 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2;3 1.8553E-10 136.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 2 1 1 1.0646 1.0365 14.297 7 Median 1.0881 1.0498 1.8046 2 0 Median 1.3222 1.0964 NaN 1 0 Median 0.91488 0.9253 8.3961 2 0 Median 1.3969 1.1533 NaN 1 0 Median 0.72444 0.76636 NaN 1 0 Median NaN NaN NaN 0 0 Median 131440000 61447000 69997000 37456000 16360000 21095000 7043700 2941900 4101800 83597000 40330000 43267000 977690 471390 506300 2369600 1342800 1026800 0 0 0 22271 707 23230 117518;117519;117520;117521;117522;117523;117524 118654;118655;118656;118657;118658;118659;118660;118661;118662;118663;118664;118665;118666;118667 118657 14 LQGEAPQSALR EKEVQALRAQLEAWRLQGEAPQSALRSQED EAWRLQGEAPQSALRSQEDGHIPPGYISQE R L Q L R S 2 1 0 0 0 2 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1168.62 Q9H2D6 Q9H2D6 2084 2094 TRIOBP TRIO and F-actin-binding protein yes yes 2 0.0093425 64.04 By MS/MS By MS/MS 2 2 1.257 1.0535 80.771 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8305 0.88107 NaN 1 1 Median 2.3639 2.0191 91.996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5611500 2116900 3494500 0 0 0 0 0 0 3162600 1567800 1594800 2448900 549140 1899800 0 0 0 0 0 0 22272 3941 23231 117525;117526;117527;117528 118668;118669;118670 118669 3 LQGEFQLR AERPDVDEKRSDLLKLQGEFQLRLRQLEKS KRSDLLKLQGEFQLRLRQLEKSLLQALNEV K L Q L R L 0 1 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 989.52943 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3734 3741 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 2.8849E-10 180.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.175 1.0496 5.8703 6 Median 1.0583 1.0234 12.196 2 0 Median 1.3172 1.0519 NaN 1 0 Median 1.0409 1.0853 NaN 1 0 Median 1.1953 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2598 1.0474 NaN 1 1 Median 177120000 82075000 95045000 60000000 29077000 30923000 50146000 21983000 28162000 51450000 24518000 26933000 12763000 5367200 7396100 0 0 0 2761200 1129600 1631600 22273 2865 23232 117529;117530;117531;117532;117533;117534 118671;118672;118673;118674;118675;118676;118677;118678;118679;118680 118676 10 LQGEGAEVQLTGK TIVLPESTSLQVVQRLQGEGAEVQLTGKVW QRLQGEGAEVQLTGKVWDEANLRAQELAKR R L Q G K V 1 0 0 0 0 2 2 3 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1328.6936 Q96GA7;F8VYZ3 Q96GA7 106 118 SDSL Serine dehydratase-like yes no 2 0.00011376 84.507 By MS/MS 1 1.5229 1.2782 NaN 1 Median NaN NaN NaN 0 0 Median 1.5229 1.2782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5594500 2319900 3274600 0 0 0 5594500 2319900 3274600 0 0 0 0 0 0 0 0 0 0 0 0 22274 3654 23233 117535 118681 118681 1 LQGEIAHVK EIKIEISELNRVIQRLQGEIAHVKKQCKNV NRVIQRLQGEIAHVKKQCKNVQDAIADAEQ R L Q V K K 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 993.56073 CON__P35908;CON__P35908v2;P35908 CON__P35908 412 420 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00061232 94.114 By MS/MS By MS/MS By MS/MS 5 1 1 0.033934 0.029653 179.84 5 Median NaN NaN NaN 0 0 Median 0.038349 0.033515 138.43 4 4 Median NaN NaN NaN 0 0 Median 0.0031749 0.0027539 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28229000 27454000 775300 0 0 0 23487000 22720000 767570 2497100 2497100 0 2244900 2237200 7730 0 0 0 0 0 0 + 22275 764;765 23234 117536;117537;117538;117539;117540;117541;117542 118682;118683;118684;118685;118686;118687;118688 118683 7 LQGEVVAFDYQSK SVGSQVSCRTCQEQRLQGEVVAFDYQSKML QRLQGEVVAFDYQSKMLALKCPSSSGKPNH R L Q S K M 1 0 0 1 0 2 1 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 13 0 1482.7355 K7ELG9;Q3MHD2 K7ELG9 25 37 LSM12 Protein LSM12 homolog yes no 2 9.7404E-07 99.522 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1787 0.97665 8.7035 5 Median 1.1835 1.0948 NaN 1 0 Median 1.1942 1.0059 NaN 1 0 Median 0.91698 0.85935 NaN 1 0 Median 1.1787 0.97665 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1553 0.97145 NaN 1 0 Median 52053000 23616000 28438000 32357000 14441000 17916000 3797400 1639800 2157600 11098000 5335200 5762900 3897300 1728600 2168700 0 0 0 903780 471260 432520 22276 1377 23235 117543;117544;117545;117546;117547 118689;118690;118691;118692;118693;118694 118689 6 LQGGVLLAQIR FRFLFGIYQQAEKARLQGGVLLAQIRKNLT EKARLQGGVLLAQIRKNLTLMATTSQLPKL R L Q I R K 1 1 0 0 0 2 0 2 0 1 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1166.7135 E9PHY0;P11117;B7Z7D2;E9PQY3 E9PHY0 192 202 ACP2 Lysosomal acid phosphatase yes no 2 0.0092274 39.022 By MS/MS By matching 1 1 1.1329 1.0438 7.1496 2 Median 1.013 0.99235 NaN 1 0 Median 1.2669 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6642200 3149400 3492800 4166400 1943300 2223100 2475800 1206000 1269700 0 0 0 0 0 0 0 0 0 0 0 0 22277 938 23236 117548;117549 118695 118695 1 LQGHLLR AQQLREHQEALHQQRLQGHLLRQQEQQQQQ QEALHQQRLQGHLLRQQEQQQQQVAREMAL R L Q L R Q 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 835.50282 O00461;F8W785 O00461 439 445 GOLIM4 Golgi integral membrane protein 4 yes no 2 0.026776 52.683 By MS/MS 1 1.4227 1.2127 NaN 1 Median NaN NaN NaN 0 0 Median 1.4227 1.2127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3290100 1417100 1873000 0 0 0 3290100 1417100 1873000 0 0 0 0 0 0 0 0 0 0 0 0 22278 1466 23237 117550 118696;118697 118696 2 LQGIDLDR ELKDVERKIAQQAAKLQGIDLDRTVQQVNQ IAQQAAKLQGIDLDRTVQQVNQEKQEKQHK K L Q D R T 0 1 0 2 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 816 823 RAD50 DNA repair protein RAD50 yes no 2 0.0012818 107.66 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.1216 1.048 18.092 6 Median 0.89492 0.84316 NaN 1 1 Median 1.2736 1.0706 NaN 1 0 Median 0.93328 1.0258 NaN 1 0 Median 1.2914 1.138 NaN 1 0 Median 1.2894 1.3268 NaN 1 0 Median 0.98769 0.82699 NaN 1 0 Median 57935000 27310000 30625000 7842600 3968200 3874400 6489300 2779700 3709600 26227000 13222000 13005000 6819700 2812400 4007300 9547400 4075300 5472100 1008900 452060 556840 22279 3561 23238 117551;117552;117553;117554;117555;117556 118698;118699;118700;118701;118702 118698 5 LQGLPIVAGTMDIR ______________________________ RLQGLPIVAGTMDIRHFFSGLTIPDGGVHI R L Q I R H 1 1 0 1 0 1 0 2 0 2 2 0 1 0 1 0 1 0 0 1 0 0 14 0 1482.8228 Q9NTZ6;A6PVI1;A6PVI0;Q5JX62 Q9NTZ6 7 20 RBM12 RNA-binding protein 12 yes no 2 0.00081363 59.542 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.9658 0.99729 17.235 5 Median 0.81868 0.81206 NaN 1 0 Median 0.85574 0.73846 NaN 1 0 Median 0.9658 1.0348 NaN 1 0 Median 1.1206 0.99729 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3137 1.109 NaN 1 0 Median 5236200 2798700 2437500 1854900 1012100 842800 1545400 867730 677710 1636700 828680 807990 136570 58882 77689 0 0 0 62666 31335 31331 22280 4111 23239 117557;117558;117559;117560;117561 118703;118704;118705;118706;118707;118708 118705 6 LQGPQTSAEVYR KTIEELEKEMLNGQKLQGPQTSAEVYRILK GQKLQGPQTSAEVYRILKQKGLLDKFPLFT K L Q Y R I 1 1 0 0 0 2 1 1 0 0 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1347.6783 Q8N335 Q8N335 299 310 GPD1L Glycerol-3-phosphate dehydrogenase 1-like protein yes yes 2 3.6214E-05 105.98 By MS/MS By MS/MS 1 1 1.3902 1.2279 41.1 2 Median 0.98229 0.91821 NaN 1 1 Median 1.9676 1.642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14025000 6424100 7600500 9750200 5027000 4723200 4274400 1397100 2877300 0 0 0 0 0 0 0 0 0 0 0 0 22281 3364 23240 117562;117563 118709;118710 118709 2 LQGQITEGSNMIK RRAQARASEDLEKLRLQGQITEGSNMIKTI LRLQGQITEGSNMIKTIAFGRYELDTWYHS R L Q I K T 0 0 1 0 0 2 1 2 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1417.7235 O95251;E7EUP3 O95251 326 338 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 2 0.00035732 87.066 By MS/MS By MS/MS 1 1 2.0012 2.0188 105.6 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9493 0.95675 NaN 1 1 Median NaN NaN NaN 0 0 Median 4.2185 4.2596 NaN 1 1 Median NaN NaN NaN 0 0 Median 69169000 14718000 54451000 0 0 0 0 0 0 13826000 6818000 7008400 0 0 0 55342000 7899800 47442000 0 0 0 22282 1759 23241 117564;117565 118711;118712 118712 2 LQGQLEQGDDTAAER RADTKRLKLLEEERRLQGQLEQGDDTAAER LQGQLEQGDDTAAERLEKVYEELRATGAAA R L Q E R L 2 1 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 15 0 1629.7594 Q8NE71;H0YGW7 Q8NE71 397 411 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.7143E-19 188.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 3 1 1.1187 0.9782 17.565 11 Median 1.1626 1.1408 12.704 2 0 Median 1.0583 0.8849 5.4583 3 0 Plateau 0.9508 1.0062 32.955 2 0 Median 1.1565 0.9782 11.714 3 1 Median NaN NaN NaN 0 0 Median 1.3501 1.104 NaN 1 0 Median 59846000 27631000 32215000 4895400 2431200 2464300 13625000 6467000 7158400 16164000 7389100 8774500 24330000 11005000 13325000 0 0 0 832140 339380 492750 22283 3427 23242 117566;117567;117568;117569;117570;117571;117572;117573;117574;117575;117576 118713;118714;118715;118716;118717;118718;118719;118720;118721;118722;118723;118724;118725 118722 13 LQGQLEQGDDTAAERLEK RADTKRLKLLEEERRLQGQLEQGDDTAAER QLEQGDDTAAERLEKVYEELRATGAAAAEA R L Q E K V 2 1 0 2 0 3 3 2 0 0 3 1 0 0 0 0 1 0 0 0 0 0 18 1 1999.9811 Q8NE71;H0YGW7 Q8NE71 397 414 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 6.3203E-15 112.3 By MS/MS By MS/MS By MS/MS 1 1 1 1.3449 1.2827 32.817 3 Median 1.3449 1.4005 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67239 0.76306 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4725 1.2827 NaN 1 0 Median 15552000 8086500 7465600 7834800 3748800 4086000 0 0 0 5949200 3531700 2417500 0 0 0 0 0 0 1768200 805990 962180 22284 3427 23243 117577;117578;117579 118726;118727;118728 118726 3 LQGSGVSLASK KGHYEVTGSDDETGKLQGSGVSLASKKSRL ETGKLQGSGVSLASKKSRLSSSSSNDSGNK K L Q S K K 1 0 0 0 0 1 0 2 0 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1045.5768 Q09666 Q09666 5848 5858 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.03568 29.473 By MS/MS 1 1.4552 1.3489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4552 1.3489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 559050 237520 321530 0 0 0 0 0 0 0 0 0 559050 237520 321530 0 0 0 0 0 0 22285 2749 23244 117580 118729 118729 1 LQGSGVTVNALHPGVAR SKLAIVLFTKELSRRLQGSGVTVNALHPGV GSGVTVNALHPGVARTELGRHTGIHGSTFS R L Q A R T 2 1 1 0 0 1 0 3 1 0 2 0 0 0 1 1 1 0 0 3 0 0 17 0 1674.9166 Q8NBN7 Q8NBN7 218 234 RDH13 Retinol dehydrogenase 13 yes yes 2;3 2.1927E-05 67.022 By MS/MS By MS/MS 1 1 1.0434 0.93306 40.072 2 Median 0.73666 0.70283 NaN 1 0 Median 1.4777 1.2387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6660200 3312300 3347900 3863900 2252500 1611300 2796300 1059800 1736600 0 0 0 0 0 0 0 0 0 0 0 0 22286 3409 23245 117581;117582 118730;118731 118730 2 LQGVGALGQAASDNSGPEDAKR NHDKLIPLLLQLTSRLQGVGALGQAASDNS GQAASDNSGPEDAKRQAKKQKTRRTLRLQE R L Q K R Q 4 1 1 2 0 2 1 4 0 0 2 1 0 0 1 2 0 0 0 1 0 0 22 1 2140.0509 J3KN36;P69849;Q5JPE7;A0A087WTD5 J3KN36 1191 1212 NOMO3;NOMO2 Nodal modulator 3;Nodal modulator 2 yes no 3 1.0476E-12 74.698 By MS/MS By MS/MS 1 1 0.89276 0.88611 2.5242 2 Median 0.86679 0.90207 NaN 1 0 Median 0.9195 0.87044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7440400 3705300 3735100 5156200 2645400 2510700 2284200 1059900 1224300 0 0 0 0 0 0 0 0 0 0 0 0 22287 1301 23246 117583;117584 118732;118733 118732 2 LQHAAELIK ILAKQQKKFGEEIARLQHAAELIKTVASRY GEEIARLQHAAELIKTVASRYDEYVNVKDF R L Q I K T 2 0 0 0 0 1 1 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1021.592 Q8WUM4 Q8WUM4 277 285 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0012482 83.623 By MS/MS By matching By MS/MS 2 2 3 1.2783 1.1124 18.305 6 Median NaN NaN NaN 0 0 Median 1.2684 1.1013 2.1068 2 0 Median NaN NaN NaN 0 0 Median 1.2422 1.0745 4.2063 2 0 Median NaN NaN NaN 0 0 Median 1.8115 1.5233 11.645 2 0 Median 14572000 6182000 8389600 0 0 0 12344000 5322400 7021500 0 0 0 778060 334090 443970 0 0 0 1449600 525510 924060 22288 3493 23247 117585;117586;117587;117588;117589;117590;117591 118734;118735;118736;118737;118738;118739 118737 6 LQHLAESWGGK ITRLGSDKRTPLLTRLQHLAESWGGKENGF LLTRLQHLAESWGGKENGFGLAECCRDLHM R L Q G K E 1 0 0 0 0 1 1 2 1 0 2 1 0 0 0 1 0 1 0 0 0 0 11 0 1224.6251 Q7Z6Z7 Q7Z6Z7 163 173 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 3.6376E-05 86.114 By MS/MS By MS/MS 3 2 1.2682 1.1632 17.02 4 Median 1.0962 1.0633 6.7939 2 1 Median 1.5317 1.3535 15.513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38241000 15282000 22960000 8534600 3880700 4653900 29706000 11401000 18306000 0 0 0 0 0 0 0 0 0 0 0 0 22289 3253 23248 117592;117593;117594;117595;117596 118740;118741;118742;118743;118744 118742 5 LQHLQGSALQKPFHASR QLALPWVPPHLRTPKLQHLQGSALQKPFHA HLQGSALQKPFHASRLVVPELSSRGEPREF K L Q S R L 2 1 0 0 0 3 0 1 2 0 3 1 0 1 1 2 0 0 0 0 0 0 17 1 1917.0333 O60826 O60826 152 168 CCDC22 Coiled-coil domain-containing protein 22 yes yes 4 0.00013351 42.913 By MS/MS By matching By matching 1 1 1 0.6542 0.69517 36.792 3 Median 0.64918 0.65195 NaN 1 0 Median 1.3865 1.2702 NaN 1 0 Median 0.6542 0.69517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11676000 5896300 5779500 5944300 3539900 2404400 3519500 1296800 2222600 2212100 1059600 1152500 0 0 0 0 0 0 0 0 0 22290 1632 23249 117597;117598;117599 118745;118746 118745 2 LQHPLGVTWDK LFAFGDVDGVGINAKLQHPLGVTWDKKRNL INAKLQHPLGVTWDKKRNLLYVADSYNHKI K L Q D K K 0 0 0 1 0 1 0 1 1 0 2 1 0 0 1 0 1 1 0 1 0 0 11 0 1292.6877 Q8NBF2 Q8NBF2 474 484 NHLRC2 NHL repeat-containing protein 2 yes yes 3 0.032111 20.84 By MS/MS 1 0.8947 0.84057 NaN 1 Median 0.8947 0.84057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5105200 3136000 1969200 5105200 3136000 1969200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22291 3402 23250 117600 118747 118747 1 LQHQTELENQLEYNK RQLHTLQKLRMDLIRLQHQTELENQLEYNK LQHQTELENQLEYNKRRERELHRKHVMELR R L Q N K R 0 0 2 0 0 3 3 0 1 0 3 1 0 0 0 0 1 0 1 0 0 0 15 0 1885.917 Q9H2K8;G3V1Q8 Q9H2K8 677 691 TAOK3 Serine/threonine-protein kinase TAO3 yes no 3 7.5405E-10 132.09 By matching By MS/MS By MS/MS By matching 1 1 2 1 1.0375 0.94991 12.752 5 Median 1.0049 0.97721 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0375 1.1369 NaN 1 0 Median 1.0685 0.93055 2.9115 2 0 Median NaN NaN NaN 0 0 Median 0.95612 0.79826 NaN 1 0 Median 28202000 13906000 14296000 11027000 5608100 5418800 0 0 0 7671100 3938100 3733100 8930800 4068600 4862200 0 0 0 572950 291530 281420 22292 3944 23251 117601;117602;117603;117604;117605 118748;118749;118750;118751 118750 4 LQHQTELTNQLEYNK RHLNTIQKMRCELIRLQHQTELTNQLEYNK LQHQTELTNQLEYNKRRERELRRKHVMEVR R L Q N K R 0 0 2 0 0 3 2 0 1 0 3 1 0 0 0 0 2 0 1 0 0 0 15 0 1857.9221 Q7L7X3 Q7L7X3 680 694 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 3 6.3642E-09 154.65 By matching By MS/MS By MS/MS 1 1 2 0.9898 0.95823 15.918 4 Median 1.1384 1.1435 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96092 1.0296 NaN 1 0 Median 0.97175 0.84248 8.0533 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20288000 10764000 9524500 1655200 667490 987670 0 0 0 7961800 4753400 3208400 10671000 5342800 5328500 0 0 0 0 0 0 22293 3227 23252 117606;117607;117608;117609 118752;118753;118754 118754 3 LQHTLQQVLDQR DLAQELRQSCATVQRLQHTLQQVLDQREEV VQRLQHTLQQVLDQREEVRQSKQLLQLYLQ R L Q Q R E 0 1 0 1 0 4 0 0 1 0 3 0 0 0 0 0 1 0 0 1 0 0 12 0 1477.8001 O00273 O00273 171 182 DFFA DNA fragmentation factor subunit alpha yes yes 2;3 0.00011157 79.492 By MS/MS By matching By MS/MS By matching 3 1 3 1 1.0188 1.0595 25.079 7 Median 0.9357 0.91602 11.219 2 0 Median 1.4578 1.2348 NaN 1 0 Median 1.0188 1.11 33.277 3 0 Median 1.2431 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27143000 11868000 15275000 10128000 4548100 5580100 1191100 344170 846940 15422000 6804800 8616800 401530 170720 230810 0 0 0 0 0 0 22294 1454 23253 117610;117611;117612;117613;117614;117615;117616;117617 118755;118756;118757;118758;118759;118760 118758 6 LQHTLQQVLDQREEVR DLAQELRQSCATVQRLQHTLQQVLDQREEV QHTLQQVLDQREEVRQSKQLLQLYLQALEK R L Q V R Q 0 2 0 1 0 4 2 0 1 0 3 0 0 0 0 0 1 0 0 2 0 0 16 1 1991.0548 O00273 O00273 171 186 DFFA DNA fragmentation factor subunit alpha yes yes 3;4 0.031043 22.475 By MS/MS By matching By MS/MS 2 1 2 1.0006 1.0549 26.522 5 Median 0.93761 0.98653 9.2024 2 0 Median NaN NaN NaN 0 0 Median 1.3027 1.3352 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2768 1.3812 38.109 2 0 Median NaN NaN NaN 0 0 Median 43283000 22125000 21159000 20529000 11071000 9458300 0 0 0 2153600 738650 1414900 0 0 0 20601000 10315000 10285000 0 0 0 22295 1454 23254 117618;117619;117620;117621;117622 118761;118762 118762 1 LQHVEDGVLSMQVASAR AFEALQQKSQGLDSRLQHVEDGVLSMQVAS HVEDGVLSMQVASARQTESLESLLSKSQEH R L Q A R Q 2 1 0 1 0 2 1 1 1 0 2 0 1 0 0 2 0 0 0 3 0 0 17 0 1838.9309 Q07065 Q07065 413 429 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 5.5672E-24 183.96 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 1 1 1.2444 1.1728 21.044 7 Median 1.077 1.023 8.13 4 2 Median 1.6369 1.4154 4.374 2 0 Median 1.6653 1.6828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 198570000 91126000 107440000 151510000 72262000 79253000 22251000 8884200 13366000 24801000 9980000 14821000 0 0 0 0 0 0 0 0 0 22296 2730 23255;23256 117623;117624;117625;117626;117627;117628;117629;117630;117631 118763;118764;118765;118766;118767;118768;118769;118770;118771;118772 118764 1413 10 LQIASDENYKDPTNLQGK FQRDAEELEKWIQEKLQIASDENYKDPTNL ASDENYKDPTNLQGKLQKHQAFEAEVQANS K L Q G K L 1 0 2 2 0 2 1 1 0 1 2 2 0 0 1 1 1 0 1 0 0 0 18 1 2033.0065 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 64 81 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 2.7862E-14 158.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 2 1 0.97746 0.94608 37.172 15 Median 1.1173 1.09 1.7433 3 0 Median 0.99426 0.95846 6.3331 4 2 Median 0.70588 0.8213 8.8364 2 0 Median 0.83243 0.79315 12.74 3 0 Median 1.6419 1.8123 96.239 2 1 Median 0.97746 0.87226 NaN 1 0 Median 554580000 276540000 278030000 70485000 32003000 38482000 136880000 65978000 70897000 224700000 122870000 101830000 65792000 31973000 33819000 51293000 20706000 30587000 5427000 3008700 2418200 22297 264;2838 23257 117632;117633;117634;117635;117636;117637;117638;117639;117640;117641;117642;117643;117644;117645;117646 118773;118774;118775;118776;118777;118778;118779;118780;118781;118782;118783;118784;118785;118786;118787;118788;118789;118790;118791;118792;118793;118794;118795;118796;118797 118780 25 LQIDEQLR HIAYLKEVEQLRMERLQIDEQLRQIGSRSY EQLRMERLQIDEQLRQIGSRSYSGRGRGRR R L Q L R Q 0 1 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1013.5506 B4DXZ6;P51114;E7EU85;E9PFF5;P51116;R9WNI0;A8MQB8;G3V0J0;Q06787 B4DXZ6 356 363 FXR1;FXR2;FMR1 Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1 no no 2 5.9291E-05 129.4 By MS/MS By MS/MS By MS/MS 4 3 1 0.94044 0.81314 16.113 5 Median 0.83171 0.80762 17.685 2 1 Median 0.89638 0.77457 6.8717 2 1 Median 1.0489 1.0543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117790000 57796000 59990000 25580000 13194000 12386000 48416000 23513000 24903000 43790000 21089000 22701000 0 0 0 0 0 0 0 0 0 22298 608;2426;539 23258 117647;117648;117649;117650;117651;117652;117653;117654 118798;118799;118800;118801;118802;118803;118804;118805;118806 118798 9 LQIDVDGR PCIMVVNHDASSIPRLQIDVDGRKEILFYD DASSIPRLQIDVDGRKEILFYDRILCDVPC R L Q G R K 0 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 914.48214 Q08J23 Q08J23 249 256 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.027049 47.082 By MS/MS By MS/MS By matching 1 1 1 1.3592 1.1633 18.636 3 Median 1.5108 1.4805 NaN 1 0 Median 1.1841 1.026 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3592 1.1633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7332700 3023400 4309200 2623100 906970 1716100 4013800 1774500 2239200 0 0 0 695840 341960 353880 0 0 0 0 0 0 22299 2745 23259 117655;117656;117657 118807;118808 118807 2 LQIEDFEAR YGHWSIMKWNRERRRLQIEDFEARIALLPL NRERRRLQIEDFEARIALLPLLQAETDRRT R L Q A R I 1 1 0 1 0 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1119.556 Q9P0J0;B4DEZ3;K7EJE1;E7ENQ6;U3KQP3 Q9P0J0 60 68 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes no 2 0.0014243 90.657 By MS/MS By MS/MS 1 1 0.78997 0.77568 5.2005 2 Median 0.78575 0.74767 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79422 0.80474 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47377000 25988000 21389000 37261000 20865000 16397000 0 0 0 10116000 5123200 4992500 0 0 0 0 0 0 0 0 0 22300 4203 23260 117658;117659 118809;118810 118810 2 LQIEESSKPVR ECRPAASENYMRLKRLQIEESSKPVRLSQQ RLKRLQIEESSKPVRLSQQLDKVVTTNYKP R L Q V R L 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 11 1 1284.7038 P13984 P13984 130 140 GTF2F2 General transcription factor IIF subunit 2 yes yes 2;3 4.2762E-05 87.308 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 3 0.79088 0.79498 23.086 11 Median 0.64168 0.63474 NaN 1 0 Median 1.2524 1.1047 41.067 3 2 Median 0.75058 0.77944 14.729 4 2 Median 0.94117 0.88819 14.81 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31235000 16537000 14698000 1489400 812690 676690 2522900 1351800 1171100 20692000 11335000 9356700 6531100 3037400 3493700 0 0 0 0 0 0 22301 1999 23261 117660;117661;117662;117663;117664;117665;117666;117667;117668;117669;117670 118811;118812;118813;118814;118815;118816;118817;118818;118819;118820;118821;118822 118822 12 LQIELGK DARRALDDTARERAKLQIELGKCKAEHDQL DTARERAKLQIELGKCKAEHDQLLLNYAKK K L Q G K C 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 103 109 LMNB1 Lamin-B1 yes no 1;2 0.0023782 107.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 9 7 1.1946 1.1611 26.512 23 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.09 1.0828 5.5145 2 0 Median 2.5138 2.2296 37.311 5 1 Linear 0.97071 0.97296 14.258 9 0 Median 1.6847 1.375 7.4587 7 0 Median 293170000 135670000 157500000 0 0 0 0 0 0 62258000 29850000 32407000 22059000 6616900 15442000 147540000 74871000 72673000 61313000 24334000 36979000 22302 2084 23262 117671;117672;117673;117674;117675;117676;117677;117678;117679;117680;117681;117682;117683;117684;117685;117686;117687;117688;117689;117690;117691;117692;117693 118823;118824;118825;118826;118827;118828;118829;118830;118831;118832;118833;118834;118835;118836;118837;118838;118839;118840;118841;118842;118843;118844;118845;118846;118847;118848;118849;118850;118851;118852;118853;118854 118844 32 LQIFSVEGQK VEKTIKLLPSSHVARLQIFSVEGQKAIQIK SHVARLQIFSVEGQKAIQIKHQDEVNWIAG R L Q Q K A 0 0 0 0 0 2 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1147.6237 A6NHR9;J3KTL8 A6NHR9 1039 1048 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00034073 86.67 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 0.94688 0.93468 20.355 8 Median 0.98893 0.99085 NaN 1 0 Median 1.0416 0.86615 NaN 1 0 Median 0.89153 0.93468 4.3563 2 0 Median 0.93431 0.75488 44.682 2 0 Median 0.77239 0.80847 NaN 1 0 Median 1.1509 0.98636 NaN 1 0 Median 49701000 25607000 24095000 1786100 1011900 774240 1178300 593900 584360 35095000 18075000 17020000 3589600 1633500 1956100 6756000 3689400 3066600 1296400 603290 693150 22303 518 23263 117694;117695;117696;117697;117698;117699;117700;117701 118855;118856;118857;118858;118859 118856 5 LQILHIHTAR LEVKMEIGLPDEKGRLQILHIHTARMRGHQ DEKGRLQILHIHTARMRGHQLLSADVDIKE R L Q A R M 1 1 0 0 0 1 0 0 2 2 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1200.7091 I3L0N3;P46459 I3L0N3 399 408 NSF Vesicle-fusing ATPase yes no 3 0.00011347 75.387 By MS/MS By MS/MS By matching 1 1 1 1.4931 1.3179 19.595 3 Median 1.1237 1.0713 NaN 1 0 Median 1.5208 1.3179 NaN 1 0 Median 1.4931 1.5849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10666000 4379100 6287000 5893000 2547000 3346000 2870500 1009000 1861500 1902600 823110 1079500 0 0 0 0 0 0 0 0 0 22304 1272 23264 117702;117703;117704 118860;118861;118862 118861 3 LQILNLGAK RKMAKSFTSEDDLVKLQILNLGAKLYLTNS EDDLVKLQILNLGAKLYLTNSKQTKLLTQY K L Q A K L 1 0 1 0 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 9 0 968.60187 O00203 O00203 534 542 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.004416 60.76 By MS/MS By matching By matching 1 3 2 1.2331 1.0826 11.545 6 Median 1.0269 1.0132 NaN 1 0 Median 1.4097 1.2497 9.4233 3 0 Median NaN NaN NaN 0 0 Median 1.1697 1.0171 11.247 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8474800 4084900 4389900 3460700 1804500 1656200 4644400 2107700 2536700 0 0 0 369690 172660 197030 0 0 0 0 0 0 22305 1447 23265 117705;117706;117707;117708;117709;117710 118863;118864 118863 2 LQILSLR NDFEILPPDIGKLTKLQILSLRDNDLISLP PDIGKLTKLQILSLRDNDLISLPKEIGELT K L Q L R D 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 7 0 841.53854 Q15404 Q15404 159 165 RSU1 Ras suppressor protein 1 yes yes 2 0.0022148 108.24 By MS/MS By matching By MS/MS 1 2 2 1.1251 1.0822 10.262 5 Median 1.1306 1.0822 NaN 1 0 Median 1.1638 0.99646 17.888 2 0 Median 1.0969 1.0683 5.8801 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13674000 6512700 7161200 3396100 1705800 1690300 578580 231080 347500 9699200 4575900 5123300 0 0 0 0 0 0 0 0 0 22306 2949 23266 117711;117712;117713;117714;117715 118865;118866;118867;118868 118867 4 LQILTSYLR DEDEYKSEDLSVLEKLQILTSYLREEHLYC LSVLEKLQILTSYLREEHLYCIWCGTAYED K L Q L R E 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q8N954 Q8N954 245 253 GPATCH11 G patch domain-containing protein 11 yes yes 2 0.017009 42.109 By MS/MS 1 1.3194 1.2932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3194 1.2932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2400200 964020 1436200 0 0 0 0 0 0 2400200 964020 1436200 0 0 0 0 0 0 0 0 0 22307 3396 23267 117716 118869 118869 1 LQIPEEER VCEGLRTQIRELWDRLQIPEEEREAVATIM IRELWDRLQIPEEEREAVATIMSGSKAKVR R L Q E R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 1012.5189 O43663 O43663 250 257 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.0034375 96.253 By MS/MS By MS/MS 2 2 0.88876 0.8665 9.2078 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82781 0.8665 7.3626 2 0 Median 0.99019 0.84072 13.821 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10307000 5849800 4456700 0 0 0 0 0 0 7170600 4214200 2956400 3135900 1635600 1500300 0 0 0 0 0 0 22308 1581 23268 117717;117718;117719;117720 118870;118871;118872 118870 3 LQIPEEEREAVATIMSGSK VCEGLRTQIRELWDRLQIPEEEREAVATIM EEEREAVATIMSGSKAKVRKALQLEVDRLE R L Q S K A 2 1 0 0 0 1 4 1 0 2 1 1 1 0 1 2 1 0 0 1 0 0 19 1 2087.0569 O43663 O43663 250 268 PRC1 Protein regulator of cytokinesis 1 yes yes 3 0.02663 14.928 By MS/MS By matching By matching 1 1 1 0.85308 0.80253 4.7369 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75588 0.80253 NaN 1 0 Median 0.85308 0.78219 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93089 0.8574 NaN 1 0 Median 3824400 2005900 1818500 0 0 0 0 0 0 3305300 1797200 1508200 132720 77464 55254 0 0 0 386370 131240 255130 22309 1581 23269 117721;117722;117723 118873;118874 118874 2 LQIQLPDSVNQLLR HLAWFGDSLTSLSQRLQIQLPDSVNQLLRY RLQIQLPDSVNQLLRYLRELPLLFHQNVLL R L Q L R Y 0 1 1 1 0 3 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 14 0 1635.9308 Q6NUQ4;H7C008 Q6NUQ4 598 611 TMEM214 Transmembrane protein 214 yes no 2 0.0020186 45.359 By MS/MS By MS/MS 2 1 0.92941 0.93919 8.5592 3 Median NaN NaN NaN 0 0 Median 1.0037 0.88362 8.6251 2 0 Median 0.92787 0.98048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9043300 4373200 4670100 0 0 0 5546500 2553800 2992700 3496800 1819400 1677400 0 0 0 0 0 0 0 0 0 22310 3145 23270 117724;117725;117726 118875;118876;118877;118878 118878 4 LQISHEAAACITGLR VQSDGQIVLVDDWIKLQISHEAAACITGLR LQISHEAAACITGLRAAMEALVVEVTKQPA K L Q L R A 3 1 0 0 1 1 1 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1638.8512 Q08211 Q08211 1090 1104 DHX9 ATP-dependent RNA helicase A yes yes 3 0.00065591 38.028 By MS/MS 1 1.4319 1.2011 NaN 1 Median NaN NaN NaN 0 0 Median 1.4319 1.2011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7758900 2875200 4883800 0 0 0 7758900 2875200 4883800 0 0 0 0 0 0 0 0 0 0 0 0 22311 2736 23271 117727 118879 118879 1 LQISTNLQR IQHLKSTTNELKSEKLQISTNLQRRQQLEE ELKSEKLQISTNLQRRQQLEEQTVELSTEV K L Q Q R R 0 1 1 0 0 2 0 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1071.6037 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 875 883 RAD50 DNA repair protein RAD50 yes no 2 8.5976E-05 148.38 By MS/MS By MS/MS 1 1 1.1287 1.1118 17.109 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1418 1.2548 NaN 1 0 Median 1.1157 0.98515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55093000 26223000 28870000 0 0 0 0 0 0 42550000 20492000 22058000 12543000 5731200 6811900 0 0 0 0 0 0 22312 3561 23272 117728;117729 118880;118881 118881 2 LQITLTR RYEDLSKSVNERNEKLQITLTRSLSVQDGL SVNERNEKLQITLTRSLSVQDGLDEMLDWM K L Q T R S 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 7 0 843.5178 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;H0YC82 E9PHM6 2066 2072 DST Dystonin yes no 2 0.01596 69.998 By matching By MS/MS By matching By matching 1 1 1 1 1.1286 1.1066 16.252 4 Median 1.1456 1.1548 NaN 1 0 Median 1.0045 0.84894 NaN 1 0 Median 1.1119 1.2322 NaN 1 0 Median 1.2216 1.0604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10923000 5339100 5584300 3680900 1726100 1954800 4412600 2303600 2109000 2421700 1139400 1282300 408220 169990 238220 0 0 0 0 0 0 22313 934 23273 117730;117731;117732;117733 118882 118882 1 LQIVEMPLAHK HRTGLYNYYDDEKEKLQIVEMPLAHKLSSL EKEKLQIVEMPLAHKLSSLIILMPHHVEPL K L Q H K L 1 0 0 0 0 1 1 0 1 1 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1277.7166 P50454;E9PPV6;E9PR70;E9PKH2 P50454 253 263 SERPINH1 Serpin H1 yes no 2;3 0.00013837 92.062 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 7 3 7 6 3 4 1.245 1.0762 26.201 30 Median 1.0161 0.99257 43.07 7 2 Median 1.1383 0.97058 7.5928 3 0 Median 1.047 1.0029 20.97 7 0 Median 1.3155 1.1815 12.992 6 1 Median 1.3889 1.4135 15.692 3 0 Median 1.4496 1.204 7.9592 4 0 Median 216800000 93194000 123600000 59984000 24553000 35431000 7080300 3282600 3797700 73501000 32467000 41034000 52140000 23138000 29002000 15740000 6453400 9286300 8350200 3300200 5050100 22314 2414 23274;23275 117734;117735;117736;117737;117738;117739;117740;117741;117742;117743;117744;117745;117746;117747;117748;117749;117750;117751;117752;117753;117754;117755;117756;117757;117758;117759;117760;117761;117762;117763 118883;118884;118885;118886;118887;118888;118889;118890;118891;118892;118893;118894;118895;118896;118897;118898;118899;118900;118901;118902 118900 1122 20 LQIVNSEKPSLENELGQGEK QLEKERLQIEREKLRLQIVNSEKPSLENEL SEKPSLENELGQGEKSMLQPQDIETEKLKL R L Q E K S 0 0 2 0 0 2 4 2 0 1 3 2 0 0 1 2 0 0 0 1 0 0 20 1 2211.1383 Q8NCY6 Q8NCY6 266 285 MSANTD4 Myb/SANT-like DNA-binding domain-containing protein 4 yes yes 3 1.7065E-07 56.936 By MS/MS By MS/MS 1 1 0.80539 0.80246 38.302 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58561 0.61207 NaN 1 0 Median 1.1077 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14578000 8117400 6460400 0 0 0 0 0 0 10758000 6186000 4571800 3820000 1931500 1888500 0 0 0 0 0 0 22315 3421 23276 117764;117765 118903;118904 118904 2 LQIWDTAGQESFR EFGARMITIDGKQIKLQIWDTAGQESFRSI IKLQIWDTAGQESFRSITRSYYRGAAGALL K L Q F R S 1 1 0 1 0 2 1 1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 13 0 1549.7525 P61019;E9PKL7;Q8WUD1;A0A3B3ITL1 P61019 57 69 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 2 1.952E-05 126.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0943 1.0106 32.741 5 Median 0.70998 0.67577 NaN 1 0 Median 0.69091 0.58418 NaN 1 0 Median 1.0943 1.0493 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3051 1.2813 NaN 1 0 Median 1.2362 1.0106 NaN 1 0 Median 94564000 53978000 40586000 81615000 47269000 34346000 5074000 2913500 2160400 5568700 2792300 2776400 0 0 0 1916500 817980 1098600 389400 184800 204590 22316 2537;3489 23277 117766;117767;117768;117769;117770 118905;118906;118907;118908;118909;118910 118905 6 LQIYYQELEK IKDQIEVMKGNVKSRLQIYYQELEKFKARW NVKSRLQIYYQELEKFKARWDQLKPGDDVI R L Q E K F 0 0 0 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1325.6867 Q8NCM8;A0A3B3ISP9 Q8NCM8 1044 1053 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.0015751 64.297 By MS/MS By MS/MS By matching 1 1 2 1.1356 0.92922 21.294 4 Median 0.7981 0.79834 NaN 1 0 Median 1.4932 1.3026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1356 0.92922 8.6939 2 0 Median 23133000 11363000 11770000 8337500 4145000 4192400 4983300 1710300 3272900 0 0 0 0 0 0 0 0 0 9812100 5507300 4304800 22317 3418 23278 117771;117772;117773;117774 118911;118912 118911 2 LQKEEEIEFLYNENTVR PWYNAYRFLIQNVLRLQKEEEIEFLYNENT KEEEIEFLYNENTVRESPNITDRWILSFMQ R L Q V R E 0 1 2 0 0 1 5 0 0 1 2 1 0 1 0 0 1 0 1 1 0 0 17 1 2153.0641 P41252;A0A0A0MSX9;J3KR24 P41252 670 686 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 2.5968E-08 96.773 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.98098 0.9507 22.4 5 Median 0.94716 0.97911 6.1944 2 0 Median 1.0105 0.9507 NaN 1 0 Median 1.2072 1.3678 NaN 1 0 Median 0.74811 0.73239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34375000 16532000 17844000 22772000 11168000 11604000 3793100 1891700 1901400 7333300 3183000 4150300 477130 288960 188160 0 0 0 0 0 0 22318 2302 23279 117775;117776;117777;117778;117779 118913;118914;118915 118914 3 LQKPNAAIR RLAILYAKRASVFVKLQKPNAAIRDCDRAI ASVFVKLQKPNAAIRDCDRAIEINPDSAQP K L Q I R D 2 1 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1009.6033 P50502;Q3KNR6;H7C3I1;F6VDH7;Q8IZP2 P50502 161 169 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 2 0.028057 56.122 By matching By MS/MS By matching 1 2 1 0.95362 0.91541 1.626 4 Median 0.92734 0.94319 NaN 1 0 Median 0.99135 0.91541 0.0090662 2 0 Median 0.89654 0.9097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4725600 2482800 2242900 917980 476330 441650 3396300 1789000 1607300 411360 217410 193950 0 0 0 0 0 0 0 0 0 22319 2415 23280 117780;117781;117782;117783 118916 118916 1 LQLDNQYAVLENQK KNRGRDEVSKNQALKLQLDNQYAVLENQKS KLQLDNQYAVLENQKSSHSQYN________ K L Q Q K S 1 0 2 1 0 3 1 0 0 0 3 1 0 0 0 0 0 0 1 1 0 0 14 0 1674.8577 Q9UKY7;D6R9V8 Q9UKY7 238 251 CDV3 Protein CDV3 homolog yes no 2 4.2516E-07 98.04 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1856 1.1413 17.215 4 Linear 1.1319 1.052 NaN 1 0 Median 1.0121 0.8611 NaN 1 0 Median 1.0929 1.047 NaN 1 0 Median 0.87612 0.73562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13629000 6329600 7299300 10247000 4580300 5667200 524380 233080 291310 2428400 1312800 1115500 428660 203390 225280 0 0 0 0 0 0 22320 4318 23281 117784;117785;117786;117787 118917;118918;118919 118917 3 LQLDSPEDAEFIVAK SLSYSRISLADIAQKLQLDSPEDAEFIVAK LQLDSPEDAEFIVAKAIRDGVIEASINHEK K L Q A K A 2 0 0 2 0 1 2 0 0 1 2 1 0 1 1 1 0 0 0 1 0 0 15 0 1673.8512 O43242 O43242 426 440 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0089852 31.597 By MS/MS By matching By matching 1 2 1 1.0211 0.9075 5.6235 4 Median 0.99374 0.92493 NaN 1 0 Median 1.0145 0.87847 1.9075 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1247 0.98671 NaN 1 0 Median 37570000 17979000 19590000 31576000 15100000 16476000 5663000 2714500 2948500 0 0 0 0 0 0 0 0 0 330930 164770 166170 22321 1560 23282 117788;117789;117790;117791 118920 118920 1 LQLEACETR ESRCQRCISELKDIRLQLEACETRTVHRLR ELKDIRLQLEACETRTVHRLRLPLDKEPAR R L Q T R T 1 1 0 0 1 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1118.539 Q15149;H0YDN1 Q15149 1131 1139 PLEC Plectin yes no 2 0.0043936 60.828 By MS/MS By matching 1 1 1.3562 1.1093 3.8658 2 Median NaN NaN NaN 0 0 Median 1.4199 1.1401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2952 1.0794 NaN 1 0 Median 16710000 6352700 10357000 0 0 0 15106000 5679100 9426800 0 0 0 0 0 0 0 0 0 1603800 673560 930280 22322 2933 23283 117792;117793 118921 118921 1 LQLEATER ERSRLRIEEEIRVVRLQLEATERQRGGAEG EEIRVVRLQLEATERQRGGAEGELQALRAR R L Q E R Q 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 958.50836 Q15149 Q15149 1596 1603 PLEC Plectin yes yes 2 0.00011763 138.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1.2779 1.1795 5.8471 6 Median 1.1736 1.1643 NaN 1 0 Median 1.4945 1.1948 NaN 1 0 Median 1.0531 1.1276 NaN 1 0 Median 1.4384 1.2524 NaN 1 0 Median 1.2318 1.268 NaN 1 1 Median 1.3257 1.0921 NaN 1 0 Median 77422000 31687000 45735000 7040300 2717000 4323200 31533000 12471000 19062000 5712200 2721500 2990700 1997200 752030 1245200 9353400 3924500 5428900 21786000 9101700 12685000 22323 2933 23284 117794;117795;117796;117797;117798;117799;117800 118922;118923;118924;118925;118926;118927;118928;118929;118930 118924 9 LQLEETDHQK LRQKAQVEQELTTLRLQLEETDHQKNLLDE LTTLRLQLEETDHQKNLLDEELQRLKAEAT R L Q Q K N 0 0 0 1 0 2 2 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1239.6095 Q15149 Q15149 2330 2339 PLEC Plectin yes yes 2;3 0.0014935 68.335 By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 1.4465 1.2974 14.631 8 Median NaN NaN NaN 0 0 Median 1.3501 1.1776 10.123 2 2 Median 1.4446 1.5867 13.366 2 0 Median 1.4098 1.3247 15.667 2 0 Median NaN NaN NaN 0 0 Median 1.4964 1.2824 5.2056 2 0 Median 13365000 5796500 7568000 0 0 0 7101000 2920500 4180500 1037400 432170 605210 1797900 828850 969100 0 0 0 3428200 1615100 1813200 22324 2933 23285 117801;117802;117803;117804;117805;117806;117807;117808;117809 118931;118932;118933;118934;118935;118936;118937;118938;118939 118938 9 LQLEETDHQKNLLDEELQR LRQKAQVEQELTTLRLQLEETDHQKNLLDE ETDHQKNLLDEELQRLKAEATEAARQRSQV R L Q Q R L 0 1 1 2 0 3 4 0 1 0 5 1 0 0 0 0 1 0 0 0 0 0 19 1 2350.1765 Q15149 Q15149 2330 2348 PLEC Plectin yes yes 3;4 1.9305E-18 143.39 By MS/MS By MS/MS 2 2 1.1076 1.2398 4.4055 4 Median 1.1307 1.1889 2.7113 2 0 Median NaN NaN NaN 0 0 Median 1.1019 1.2761 0.86038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80886000 38469000 42416000 68190000 32763000 35427000 0 0 0 12696000 5706400 6989200 0 0 0 0 0 0 0 0 0 22325 2933 23286 117810;117811;117812;117813 118940;118941;118942;118943;118944 118941 5 LQLEETMPSPYGR GKAIKGKVGKPKVKKLQLEETMPSPYGRRI KKLQLEETMPSPYGRRIIPEITAMKADASK K L Q G R R 0 1 0 0 0 1 2 1 0 0 2 0 1 0 2 1 1 0 1 0 0 0 13 0 1519.7341 Q02880 Q02880 1228 1240 TOP2B DNA topoisomerase 2-beta yes yes 2 3.8838E-07 109.42 By MS/MS By matching By MS/MS 2 1 2 0.75076 0.78344 26.787 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68427 0.7495 22.591 2 1 Median 1.1392 0.99712 NaN 1 0 Median 0.58481 0.63005 30.817 2 0 Median NaN NaN NaN 0 0 Median 28095000 17214000 10881000 0 0 0 0 0 0 16295000 9535700 6759100 362350 199820 162530 11438000 7478500 3959700 0 0 0 22326 2704 23287;23288 117814;117815;117816;117817;117818 118945;118946;118947;118948;118949 118946 1391 5 LQLEIDQK SGPQIKELTDEEAERLQLEIDQKKDAENHE TDEEAERLQLEIDQKKDAENHEAQLKNGSL R L Q Q K K 0 0 0 1 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 985.54441 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 115 122 NUDC Nuclear migration protein nudC yes no 2 0.018576 67.981 By MS/MS 1 1.1146 0.94938 NaN 1 Median NaN NaN NaN 0 0 Median 1.1146 0.94938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26519000 12592000 13927000 0 0 0 26519000 12592000 13927000 0 0 0 0 0 0 0 0 0 0 0 0 22327 4376 23289 117819 118950 118950 1 LQLELSK DARKTLDSVAKERARLQLELSKVREEFKEL SVAKERARLQLELSKVREEFKELKARNTKK R L Q S K V 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 P02545;Q3BDU5 P02545 102 108 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0023774 115.69 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 5 1.1889 1.0903 21.327 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2151 1.1834 2.6752 2 0 Median 1.2448 1.0464 34.378 4 0 Median 1.1908 1.0755 17.941 4 0 Linear 1.4838 1.2342 17.016 5 0 Median 378530000 165610000 212920000 0 0 0 0 0 0 90472000 41640000 48832000 58728000 21562000 37166000 146460000 69752000 76712000 82861000 32650000 50211000 22328 1834;3010 23290 117820;117821;117822;117823;117824;117825;117826;117827;117828;117829;117830;117831;117832;117833;117834 118951;118952;118953;118954;118955;118956;118957;118958;118959;118960;118961;118962 118959 12 LQLEQQVATGPALDNKK VYLGAVNALYQLDAKLQLEQQVATGPALDN LEQQVATGPALDNKKCTPPIEASQCHEAEM K L Q K K C 2 0 1 1 0 3 1 1 0 0 3 2 0 0 1 0 1 0 0 1 0 0 17 1 1852.0054 O15031;E2PU09;A6QRH1 O15031 61 77 PLXNB2 Plexin-B2 yes no 3 5.1156E-06 65.107 By MS/MS By matching 1 1 1.0235 0.99056 63.043 2 Median 0.66077 0.63428 NaN 1 0 Median 1.5854 1.547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14932000 9058900 5873200 14008000 8831000 5177100 923910 227860 696060 0 0 0 0 0 0 0 0 0 0 0 0 22329 1514 23291 117835;117836 118963 118963 1 LQLETEIEALK IHGLRKVIDDTNITRLQLETEIEALKEELL NITRLQLETEIEALKEELLFMKKNHEEEVK R L Q L K E 1 0 0 0 0 1 3 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1285.7129 CON__P05784;P05783;F8VZY9 P05783 197 207 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.0020633 55.567 By MS/MS By matching 1 1 1.5577 1.4791 48.152 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0716 1.0523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2643 2.079 NaN 1 0 Median 6579800 2759700 3820100 0 0 0 0 0 0 5866500 2470300 3396100 0 0 0 0 0 0 713360 289370 423990 + 22330 1869;749 23292 117837;117838 118964 118964 1 LQLETEIEALKEELLFMK IHGLRKVIDDTNITRLQLETEIEALKEELL ETEIEALKEELLFMKKNHEEEVKGLQAQIA R L Q M K K 1 0 0 0 0 1 5 0 0 1 5 2 1 1 0 0 1 0 0 0 0 0 18 1 2176.1701 CON__P05784;P05783;F8VZY9 P05783 197 214 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 1.3775E-14 114.91 By MS/MS By MS/MS By matching 6 2 1 1.3115 1.2571 6.9939 9 Median NaN NaN NaN 0 0 Median 1.3987 1.2905 8.609 6 0 Median 1.2064 1.2574 0.040055 2 0 Median 1.3115 1.2457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 208140000 79788000 128350000 0 0 0 171770000 64784000 106990000 36151000 14912000 21239000 219630 92069 127560 0 0 0 0 0 0 + 22331 1869;749 23293;23294 117839;117840;117841;117842;117843;117844;117845;117846;117847 118965;118966;118967;118968;118969;118970;118971 118971 266 7 LQLGIEEDLAEPSK YKFNDEDIEKMEGKKLQLGIEEDLAEPSKS KLQLGIEEDLAEPSKSQTRKPKCGKGTHCS K L Q S K S 1 0 0 1 0 1 3 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 14 0 1540.7985 Q86UV5 Q86UV5 382 395 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 2 4.5699E-06 94.767 By MS/MS By matching By matching 2 1 1 0.58627 0.57429 21.218 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5085 0.57429 6.4094 2 0 Median 0.62003 0.53027 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97313 0.84352 NaN 1 0 Median 5807800 3627700 2180100 0 0 0 0 0 0 5283000 3338500 1944500 326300 191590 134710 0 0 0 198480 97591 100890 22332 3281 23295 117848;117849;117850;117851 118972 118972 1 LQLGTPPPLLAAR QPMYSREHGAAASERLQLGTPPPLLAARLV ERLQLGTPPPLLAARLVPPRNLMGSSIGYH R L Q A R L 2 1 0 0 0 1 0 1 0 0 4 0 0 0 3 0 1 0 0 0 0 0 13 0 1345.8082 Q9P2N5 Q9P2N5 443 455 RBM27 RNA-binding protein 27 yes yes 2 5.2241E-07 107.15 By matching By MS/MS 1 1 0.40232 0.43454 26.961 2 Median 0.33865 0.35911 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47797 0.5258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5281400 3528700 1752700 938170 683890 254290 0 0 0 4343300 2844900 1498400 0 0 0 0 0 0 0 0 0 22333 4227 23296 117852;117853 118973;118974 118973 2 LQLHSQYHVIR YRCNQCSLAFKTIEKLQLHSQYHVIRAATM TIEKLQLHSQYHVIRAATMCCLCQRSFRTF K L Q I R A 0 1 0 0 0 2 0 0 2 1 2 0 0 0 0 1 0 0 1 1 0 0 11 0 1392.7626 Q15911 Q15911 1416 1426 ZFHX3 Zinc finger homeobox protein 3 yes yes 3 0.027494 22.232 By MS/MS 1 0.83484 0.91795 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83484 0.91795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2893800 1623400 1270400 0 0 0 0 0 0 2893800 1623400 1270400 0 0 0 0 0 0 0 0 0 22334 2977 23297 117854 118975 118975 1 LQLLEDDKENR LGLVDIVKGTNSYYKLQLLEDDKENRYWIF SYYKLQLLEDDKENRYWIFRSWGRVGTVIG K L Q N R Y 0 1 1 2 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1371.6994 P09874 P09874 572 582 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.4695E-51 230.24 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 6 10 2 5 1.0477 1.1056 22.668 26 Median 0.71801 0.7477 7.0119 2 0 Median 1.0537 0.9824 NaN 1 0 Median 0.99281 1.124 8.2508 6 0 Median 1.1913 1.1449 28.397 10 1 Median 0.96519 1.062 33.831 2 0 Median 1.2237 1.0505 17.058 5 1 Median 987320000 451850000 535470000 15977000 9260500 6716700 8033800 4458000 3575900 412330000 197690000 214640000 464070000 201470000 262610000 52057000 23521000 28535000 34854000 15458000 19395000 22335 1922 23298 117855;117856;117857;117858;117859;117860;117861;117862;117863;117864;117865;117866;117867;117868;117869;117870;117871;117872;117873;117874;117875;117876;117877;117878;117879;117880 118976;118977;118978;118979;118980;118981;118982;118983;118984;118985;118986;118987;118988;118989;118990;118991;118992;118993;118994;118995;118996;118997;118998;118999;119000;119001;119002;119003;119004;119005;119006;119007;119008;119009;119010;119011;119012 118999 37 LQLLEDDKENRYWIFR LGLVDIVKGTNSYYKLQLLEDDKENRYWIF QLLEDDKENRYWIFRSWGRVGTVIGSNKLE K L Q F R S 0 2 1 2 0 1 2 0 0 1 3 1 0 1 0 0 0 1 1 0 0 0 16 2 2137.0956 P09874 P09874 572 587 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4 1.274E-10 112.72 By matching By MS/MS By matching 1 2 1 1.0593 1.1942 8.4626 4 Median 0.99553 1.0722 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0593 1.1942 1.8084 2 0 Median NaN NaN NaN 0 0 Median 1.1258 1.317 NaN 1 0 Median NaN NaN NaN 0 0 Median 31252000 14716000 16536000 1104600 437450 667130 0 0 0 28900000 13679000 15221000 0 0 0 1247800 599960 647860 0 0 0 22336 1922 23299 117881;117882;117883;117884 119013;119014;119015;119016 119014 4 LQLLEEKTDEDEKTILNLENSNK KLEKSEKVRAEVEQKLQLLEEKTDEDEKTI DEDEKTILNLENSNKSLSGELREVKKDLSQ K L Q N K S 0 0 3 2 0 1 5 0 0 1 5 3 0 0 0 1 2 0 0 0 0 0 23 2 2715.3814 Q8IX12 Q8IX12 1055 1077 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3;4 6.1846E-16 66.644 By MS/MS 3 0.81339 0.97741 10.711 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81339 0.97741 10.711 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56551000 28939000 27611000 0 0 0 0 0 0 56551000 28939000 27611000 0 0 0 0 0 0 0 0 0 22337 3331 23300 117885;117886;117887 119017;119018;119019;119020 119017 4 LQLLSNLFHGMDK EKLVKFREGERPSLRLQLLSNLFHGMDKNT LRLQLLSNLFHGMDKNTPVRYTVYCSLIKV R L Q D K N 0 0 1 1 0 1 0 1 1 0 4 1 1 1 0 1 0 0 0 0 0 0 13 0 1514.7915 Q7L2H7;J3KNJ2;E9PN86 Q7L2H7 103 115 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 2.337E-05 93.821 By MS/MS By MS/MS By matching 1 2 1 1.1384 1.0103 3.7393 4 Median 1.1193 1.0446 NaN 1 0 Median 1.1952 1.0103 3.4561 2 0 Median NaN NaN NaN 0 0 Median 1.1034 0.96711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47798000 21624000 26174000 4660700 2171900 2488800 43086000 19427000 23659000 0 0 0 51108 25154 25954 0 0 0 0 0 0 22338 3221 23301 117888;117889;117890;117891 119021;119022;119023;119024 119021 4 LQLLTWTPLEAK YIGLCLPKLFNPLIRLQLLTWTPLEAKCRD LIRLQLLTWTPLEAKCRDFENMLWFESLLF R L Q A K C 1 0 0 0 0 1 1 0 0 0 4 1 0 0 1 0 2 1 0 0 0 0 12 0 1411.8075 Q9Y5B6 Q9Y5B6 632 643 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 0.061231 18.312 By matching By matching By MS/MS By matching 1 1 2 1 0.84791 0.86964 15.424 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89689 0.95672 NaN 1 0 Median 1.0418 0.92646 NaN 1 0 Median 0.81332 0.81856 8.5612 2 0 Median 0.79989 0.65622 NaN 1 0 Median 2133300 1030600 1102700 0 0 0 0 0 0 690680 299210 391470 73395 30055 43341 1241000 631700 609290 128240 69677 58565 22339 4455 23302 117892;117893;117894;117895;117896 119025 119025 1 LQLNGNLQLELAQVLAQERPK PSQQELPRLLSAACRLQLNGNLQLELAQVL LQLELAQVLAQERPKLPEDPLLSGLLDSPA R L Q P K L 2 1 2 0 0 4 2 1 0 0 6 1 0 0 1 0 0 0 0 1 0 0 21 1 2374.3332 P49327;A0A0U1RQF0 P49327 1188 1208 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 9.8089E-12 64.203 By MS/MS 3 1.1834 1.0983 8.8602 3 Median NaN NaN NaN 0 0 Median 1.1834 1.0983 8.8602 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40480000 17663000 22817000 0 0 0 40480000 17663000 22817000 0 0 0 0 0 0 0 0 0 0 0 0 22340 2377 23303 117897;117898;117899 119026;119027;119028;119029 119027 4 LQLNYLGNYIPR YDTLPVLIHGNGPTKLQLNYLGNYIPRFWT PTKLQLNYLGNYIPRFWTFETGCTVCDEGL K L Q P R F 0 1 2 0 0 1 0 1 0 1 3 0 0 0 1 0 0 0 2 0 0 0 12 0 1462.7932 Q02809 Q02809 248 259 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.00059855 71.223 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.92251 0.93425 12.254 4 Median 0.95674 0.92501 NaN 1 0 Median 0.88433 0.76418 NaN 1 0 Median 0.8895 0.94359 NaN 1 0 Median 1.1834 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17603000 8291500 9311600 3753100 1780700 1972400 7019500 3221500 3798000 3168500 1641100 1527500 3662000 1648300 2013700 0 0 0 0 0 0 22341 2702 23304 117900;117901;117902;117903 119030;119031;119032;119033;119034 119034 5 LQLPVWEYK NLPHTPRYYDILKKRLQLPVWEYKDRFTDI DILKKRLQLPVWEYKDRFTDILVRHQSFVL R L Q Y K D 0 0 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 9 0 1174.6386 O43143 O43143 135 143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.028218 36.842 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.96752 0.98261 9.594 5 Median NaN NaN NaN 0 0 Median 0.96752 0.84604 NaN 1 0 Median 0.93008 1.0239 NaN 1 0 Median 0.97045 0.84157 NaN 1 0 Median 0.95023 0.98261 NaN 1 0 Median 1.1778 1.0037 NaN 1 0 Median 16945000 8306500 8638700 0 0 0 4868800 2323100 2545600 5780400 2970800 2809600 2630700 1289600 1341000 3089900 1483100 1606800 575530 239900 335620 22342 1553 23305 117904;117905;117906;117907;117908 119035;119036;119037;119038 119037 4 LQLPVWEYKDR NLPHTPRYYDILKKRLQLPVWEYKDRFTDI LKKRLQLPVWEYKDRFTDILVRHQSFVLVG R L Q D R F 0 1 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 11 1 1445.7667 O43143 O43143 135 145 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 9.3724E-05 77.677 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 4 2 1 5 4 0.82685 0.75854 20.94 20 Median 0.851 0.88381 24.23 4 0 Median 0.98061 0.88561 12.896 4 0 Median 0.80255 0.88246 0.28733 2 0 Median 0.79503 0.77037 NaN 1 0 Median 0.56151 0.62166 23.328 5 0 Median 0.84314 0.71343 15.736 4 0 Median 60281000 32979000 27301000 14931000 7382100 7548900 15038000 8787300 6250500 5558000 3208100 2349900 284970 143770 141200 21422000 11896000 9525300 3047400 1561800 1485600 22343 1553 23306 117909;117910;117911;117912;117913;117914;117915;117916;117917;117918;117919;117920;117921;117922;117923;117924;117925;117926;117927;117928 119039;119040;119041;119042;119043;119044;119045;119046;119047;119048;119049;119050 119046 12 LQLQADRHQEHIR LLNQEKSELLVEQGRLQLQADRHQEHIRAR GRLQLQADRHQEHIRARDSLIQSLATQLEL R L Q I R A 1 2 0 1 0 3 1 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 13 1 1642.8652 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 353 365 RAD50 DNA repair protein RAD50 yes no 4 0.00033609 58.674 By matching By MS/MS By matching By matching 1 1 1 1 1.2273 1.32 2.8626 4 Median 1.2564 1.3436 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0518 1.2792 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1988 1.2968 NaN 1 0 Median 1.5033 1.3589 NaN 1 0 Median 10996000 5129000 5866700 1652800 754040 898740 0 0 0 7070800 3381100 3689600 0 0 0 2110800 926450 1184400 161260 67358 93898 22344 3561 23307 117929;117930;117931;117932 119051;119052 119052 2 LQLQAEER GRVDGVREKSDPHIKLQLQAEERGVVSIKG KSDPHIKLQLQAEERGVVSIKGVCANRYLA K L Q E R G 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 985.51926 A0A0A0MQV6;P09038 A0A0A0MQV6 195 202 FGF2 Fibroblast growth factor 2 yes no 2 0.02273 65.038 By MS/MS 1 0.72615 0.68056 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72615 0.68056 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1495500 864720 630750 0 0 0 0 0 0 1495500 864720 630750 0 0 0 0 0 0 0 0 0 22345 148 23308 117933 119053 119053 1 LQLQGLDLSSR KKQTEQLSLELEVARLQLQGLDLSSRSLLG EVARLQLQGLDLSSRSLLGIDTEDAIQGRN R L Q S R S 0 1 0 1 0 2 0 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 11 0 1228.6776 P49454 P49454 1643 1653 CENPF Centromere protein F yes yes 2 0.00015021 93.111 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.134 1.0684 47.69 5 Median 0.64929 0.61337 NaN 1 0 Median 0.6349 0.5498 NaN 1 0 Median 1.3258 1.433 26.05 2 0 Median 1.2278 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27951000 13078000 14873000 5931500 3326000 2605500 181040 120490 60551 20844000 9193400 11650000 994450 438120 556330 0 0 0 0 0 0 22346 2383 23309 117934;117935;117936;117937;117938 119054;119055;119056;119057 119055 4 LQLSLADFR GSATNYITRNKARKKLQLSLADFRRLCILK NKARKKLQLSLADFRRLCILKGIYPHEPKH K L Q F R R 1 1 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1061.5869 B5MCF9;O00541 B5MCF9 27 35 PES1 Pescadillo homolog yes no 2 0.0023677 72.485 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 4 3 1.2964 1.1846 16.102 11 Median 1.4655 1.4842 NaN 1 0 Median 1.2464 1.0782 NaN 1 0 Median 1.1064 1.1339 NaN 1 0 Median 1.3343 1.151 NaN 1 0 Median 1.2044 1.2533 20.839 4 0 Median 1.5209 1.2667 14.007 3 0 Median 18647000 8056900 10590000 868030 319040 548980 1987800 859980 1127800 7263800 3237200 4026600 201730 95080 106650 4976200 2224900 2751300 3349300 1320700 2028600 22347 618 23310 117939;117940;117941;117942;117943;117944;117945;117946;117947;117948;117949 119058;119059;119060;119061 119060 4 LQLSVYTTTR GDANCIQPYLARRPKLQLSVYTTTRSHLGA ARRPKLQLSVYTTTRSHLGAENNIDLVLNV K L Q T R S 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 3 0 1 1 0 0 10 0 1180.6452 Q96KA5 Q96KA5 53 62 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes yes 2 1.8935E-07 148.52 By MS/MS By MS/MS 1 2 1.2423 0.9994 22.154 3 Plateau 1.2133 1.1827 NaN 1 1 Median 0.97771 0.87287 19.145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31026000 14067000 16959000 15651000 7362500 8288900 15375000 6704500 8670300 0 0 0 0 0 0 0 0 0 0 0 0 22348 3691 23311 117950;117951;117952 119062;119063;119064 119062 3 LQLTAQSQVQMK KELLVATKINSSAIKLQLTAQSQVQMKKQK AIKLQLTAQSQVQMKKQKVSTPSDYTLSFL K L Q M K K 1 0 0 0 0 4 0 0 0 0 2 1 1 0 0 1 1 0 0 1 0 0 12 0 1373.7337 E7EN32;O00255 E7EN32 522 533 MEN1 Menin yes no 2 3.4435E-06 108.43 By MS/MS By MS/MS 2 1 0.98417 0.99161 15.856 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0249 1.0605 9.4989 2 0 Median 0.96897 0.82693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20005000 9217300 10788000 0 0 0 0 0 0 18156000 8215200 9941200 1848600 1002100 846540 0 0 0 0 0 0 22349 860 23312;23313 117953;117954;117955 119065;119066;119067;119068;119069;119070 119067 310 6 LQLVGTAAMLLASK YIDRFLSSMSVLRGKLQLVGTAAMLLASKF KLQLVGTAAMLLASKFEEIYPPEVAEFVYI K L Q S K F 3 0 0 0 0 1 0 1 0 0 4 1 1 0 0 1 1 0 0 1 0 0 14 0 1414.8218 P20248;P78396 P20248 253 266 CCNA2;CCNA1 Cyclin-A2;Cyclin-A1 yes no 2 0.00092473 55.401 By MS/MS 1 1.2141 1.1894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2141 1.1894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6385700 2488300 3897400 0 0 0 0 0 0 6385700 2488300 3897400 0 0 0 0 0 0 0 0 0 22350 2075 23314 117956 119071;119072 119071 2 LQLVQLSK TERAFFRGRDSREERLQLVQLSKENPQLLD RDSREERLQLVQLSKENPQLLDAGITGYFF R L Q S K E 0 0 0 0 0 2 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 8 0 927.57532 Q7Z4H8;H0YEM3 Q7Z4H8 323 330 KDELC2 KDEL motif-containing protein 2 yes no 2 0.0071626 68.214 By MS/MS By matching 1 2 1.3628 1.2344 18.061 3 Median 1.0637 1.0108 NaN 1 0 Median 1.5224 1.3376 11.358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11744000 5328000 6415900 7286100 3591200 3695000 4457800 1736800 2720900 0 0 0 0 0 0 0 0 0 0 0 0 22351 3246 23315 117957;117958;117959 119073 119073 1 LQLWDIAGQER FALKVLNWDSRTLVRLQLWDIAGQERFGNM TLVRLQLWDIAGQERFGNMTRVYYKEAVGA R L Q E R F 1 1 0 1 0 2 1 1 0 1 2 0 0 0 0 0 0 1 0 0 0 0 11 0 1327.6884 Q13637;O14966;P57729 Q13637 77 87 RAB32;RAB29;RAB38 Ras-related protein Rab-32;Ras-related protein Rab-7L1;Ras-related protein Rab-38 yes no 2 0.00013373 86.624 By MS/MS By MS/MS 1 2 0.98819 0.84502 28.845 3 Median 0.56701 0.53843 NaN 1 0 Median 1.0376 0.88237 6.1161 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24470000 14963000 9507500 17458000 11617000 5841600 7012200 3346300 3666000 0 0 0 0 0 0 0 0 0 0 0 0 22352 2833 23316 117960;117961;117962 119074;119075;119076 119076 3 LQLWDTAGQER DFLSKTMYLEDRTVRLQLWDTAGQERFRSL RTVRLQLWDTAGQERFRSLIPSYIRDSTVA R L Q E R F 1 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 1 1 0 0 0 0 11 0 1315.6521 P20340;Q14964;Q9NRW1;J3KR73;C9JU14;C9JB90 P20340 64 74 RAB6A;RAB39A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-39A;Ras-related protein Rab-6B no no 2 2.4863E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 2 2 2 1.2175 1.1078 17.232 19 Median 1.1263 1.0858 11.646 6 1 Median 1.2175 1.0298 15.138 5 1 Median 1.2256 1.1769 4.5328 2 0 Median 1.3645 1.1332 1.7851 2 2 Median 1.4019 1.4011 16.613 2 1 Median 1.0293 0.81447 16.994 2 0 Median 866240000 391630000 474610000 613470000 280070000 333400000 103210000 44366000 58844000 113130000 52196000 60937000 11724000 4820900 6903100 16142000 6019400 10123000 8566900 4165600 4401300 22353 2079;4089;2902 23317 117963;117964;117965;117966;117967;117968;117969;117970;117971;117972;117973;117974;117975;117976;117977;117978;117979;117980;117981 119077;119078;119079;119080;119081;119082;119083;119084;119085;119086;119087;119088;119089;119090;119091;119092;119093;119094;119095;119096;119097;119098;119099;119100;119101;119102;119103;119104;119105;119106;119107;119108;119109 119081 33 LQMAIEESKR EHDKEERIRRGDDLRLQMAIEESKRETGGK GDDLRLQMAIEESKRETGGKEESSLMDLAD R L Q K R E 1 1 0 0 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 10 1 1203.6282 Q9Y6I3 Q9Y6I3 238 247 EPN1 Epsin-1 yes yes 3 0.0013167 50.284 By MS/MS 1 0.84671 0.86237 NaN 1 Median 0.84671 0.86237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389300 785970 603310 1389300 785970 603310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22354 4493 23318 117982 119110;119111 119111 2 LQMDNELLR QTNQRMQETFKEAERLQMDNELLRQQIEEL FKEAERLQMDNELLRQQIEELKNENALLRA R L Q L R Q 0 1 1 1 0 1 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 9 0 1130.5754 M0QXT0;Q15853;M0QYU7;B4DLJ1 M0QXT0 214 222 USF2 Upstream stimulatory factor 2 yes no 2 0.0025104 71.501 By MS/MS By matching 1 1 0.88859 0.8745 14.87 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88991 0.97146 NaN 1 0 Median 0.88728 0.78722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15909000 7375800 8533100 0 0 0 0 0 0 14864000 6836600 8027100 1045100 539130 505980 0 0 0 0 0 0 22355 1411 23319 117983;117984 119112;119113 119112 2 LQMEAPHIIVGTPGR HACIGGTNVRAEVQKLQMEAPHIIVGTPGR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI K L Q G R V 1 1 0 0 0 1 1 2 1 2 1 0 1 0 2 0 1 0 0 1 0 0 15 0 1617.8661 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25 P60842 147 161 EIF4A1 Eukaryotic initiation factor 4A-I yes no 2;3 7.1419E-10 145.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 6 8 5 8 5 0.90031 0.84836 46.561 45 Median 0.85448 0.82996 30.891 13 1 Median 0.8233 0.71761 28.244 6 0 Median 0.9117 0.91413 4.1317 8 2 Median 0.83322 0.71546 49.36 5 1 Median 1.8816 1.931 21.685 8 2 Median 0.85377 0.7096 12.794 5 0 Median 1005100000 531830000 473290000 397070000 214430000 182650000 55638000 27931000 27707000 244110000 126150000 117960000 247940000 138530000 109410000 34903000 10979000 23924000 25461000 13824000 11637000 22356 2529 23320;23321 117985;117986;117987;117988;117989;117990;117991;117992;117993;117994;117995;117996;117997;117998;117999;118000;118001;118002;118003;118004;118005;118006;118007;118008;118009;118010;118011;118012;118013;118014;118015;118016;118017;118018;118019;118020;118021;118022;118023;118024;118025;118026;118027;118028;118029;118030 119114;119115;119116;119117;119118;119119;119120;119121;119122;119123;119124;119125;119126;119127;119128;119129;119130;119131;119132;119133;119134;119135;119136;119137;119138;119139;119140;119141;119142;119143;119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158;119159;119160;119161;119162;119163;119164;119165;119166;119167;119168;119169;119170;119171;119172;119173;119174;119175;119176 119138 1210 63 LQMEQQQQLQQR SFMILVLPVVFETEKLQMEQQQQLQQRQIL TEKLQMEQQQQLQQRQILLGPNTGLSGGMP K L Q Q R Q 0 1 0 0 0 7 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 12 0 1556.7729 Q9NS69 Q9NS69 106 117 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2;3 3.2286E-30 208.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 3 1.2351 1.0906 28.543 12 Median 1.1342 1.1246 5.9028 3 0 Median 1.4715 1.2208 15.573 4 0 Median 1.2556 1.1964 NaN 1 0 Median 0.55127 0.45758 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2939 1.0137 11.06 3 1 Plateau 125860000 55215000 70650000 72035000 32756000 39279000 42243000 16661000 25582000 3424200 1350600 2073600 4964600 3021300 1943300 0 0 0 3196800 1425300 1771500 22357 4096 23322;23323 118031;118032;118033;118034;118035;118036;118037;118038;118039;118040;118041;118042;118043 119177;119178;119179;119180;119181;119182;119183;119184;119185;119186;119187;119188;119189;119190;119191;119192 119184 1875 15 LQMTIENMNHLK HLYRIIQHLVPASFRLQMTIENMNHLKFIP SFRLQMTIENMNHLKFIPHKDYTANRLVSG R L Q L K F 0 0 2 0 0 1 1 0 1 1 2 1 2 0 0 0 1 0 0 0 0 0 12 0 1470.7323 Q9BTE3 Q9BTE3 420 431 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2;3 0.001141 64.297 By MS/MS 2 0.45983 0.42878 NaN 1 Median 0.45983 0.42878 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25439000 20445000 4993800 25439000 20445000 4993800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22358 3825 23324 118044;118045 119193;119194 119193 2 LQMYLPETIDIGVNEEK L Q E K 0 0 1 1 0 1 3 1 0 2 2 1 1 0 1 0 1 0 1 1 0 0 17 0 1990.9921 REV__A0A3B3IS57 yes no 3 0.055864 9.6577 By MS/MS 1 0.75016 0.689 NaN 1 Median 0.75016 0.689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50753000 28718000 22035000 50753000 28718000 22035000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22359 4514 23325 118046 119195 119195 1 LQNAADMPANMDK ______________________________ DRLQNAADMPANMDKHALKKYRREAYHRVF R L Q D K H 3 0 2 2 0 1 0 0 0 0 1 1 2 0 1 0 0 0 0 0 0 0 13 0 1417.633 P49902;Q5JUV4;S4R3E7;S4R3A6 P49902 9 21 NT5C2 Cytosolic purine 5-nucleotidase yes no 2 0.0012216 57.348 By matching By MS/MS 1 1 0.90682 0.82674 5.3862 2 Median 0.82536 0.79584 NaN 1 0 Median 0.99632 0.85883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5105900 2098000 3007900 2456400 925710 1530700 2649400 1172300 1477100 0 0 0 0 0 0 0 0 0 0 0 0 22360 2403 23326 118047;118048 119196 119196 1 LQNALNEQR DLALEKAARAELEMRLQNALNEQRVEFATL AELEMRLQNALNEQRVEFATLQEALAHALT R L Q Q R V 1 1 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1084.5625 A0A087WY61;Q14980 Q14980 1034 1042 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 2.456E-05 155.1 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.92373 0.84403 9.5656 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76897 0.84403 NaN 1 0 Median 0.92373 0.81026 NaN 1 1 Median 0.85455 0.88038 NaN 1 0 Median 1.1073 0.92116 15.515 2 0 Median 21995000 11320000 10676000 0 0 0 0 0 0 6706700 3654800 3051900 1599500 775690 823780 9058600 4732200 4326400 4630600 2156900 2473700 22361 2905;77 23327 118049;118050;118051;118052;118053 119197;119198;119199;119200;119201;119202;119203 119200 7 LQNEDKIISNVPADSLIR KWAPPKFLPHKYDVKLQNEDKIISNVPADS EDKIISNVPADSLIRTERPPNKEIVRYFIR K L Q I R T 1 1 2 2 0 1 1 0 0 3 2 1 0 0 1 2 0 0 0 1 0 0 18 1 2024.0902 Q9UIG0 Q9UIG0 226 243 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 2.776E-14 119.8 By matching By matching By MS/MS By matching 1 1 5 3 0.87116 0.90516 26.72 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6189 0.74212 NaN 1 0 Median 2.0617 1.8221 NaN 1 0 Median 0.81288 0.89404 10.083 5 0 Median 1.0689 0.94131 16.479 3 0 Median 55258000 30237000 25021000 0 0 0 0 0 0 6469200 3534400 2934800 360750 110750 249990 47271000 26016000 21255000 1157300 576490 580810 22362 4290 23328 118054;118055;118056;118057;118058;118059;118060;118061;118062;118063 119204;119205;119206;119207;119208 119204 5 LQNEILK QGESEVSRISEVLQKLQNEILKDLSDGIHV RISEVLQKLQNEILKDLSDGIHVVKDARER K L Q L K D 0 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 856.50182 Q07065 Q07065 207 213 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0017134 110.63 By matching By MS/MS By matching 2 2 1 1.2843 1.3652 21.362 5 Median 1.0409 0.99528 1.5778 2 0 Median 1.7732 1.5018 5.7504 2 0 Median 1.2843 1.3652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34540000 14215000 20325000 11795000 5608600 6186600 19976000 7488400 12488000 2769100 1118200 1650800 0 0 0 0 0 0 0 0 0 22363 2730 23329 118064;118065;118066;118067;118068 119209 119209 1 LQNELDMVK VTKCAGGHDDATLARLQNELDMVKISKDPS DATLARLQNELDMVKISKDPSKIPSWLKVN R L Q V K I 0 0 1 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1088.5536 P49916 P49916 741 749 LIG3 DNA ligase 3 yes yes 2 0.011498 62.546 By MS/MS 1 0.66771 0.57583 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66771 0.57583 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4406300 2502800 1903500 0 0 0 0 0 0 0 0 0 4406300 2502800 1903500 0 0 0 0 0 0 22364 2406 23330 118069 119210 119210 1 LQNELDNVSTLLEEAEKK EGDRLRVELAEKASKLQNELDNVSTLLEEA ELDNVSTLLEEAEKKGIKFAKDAASLESQL K L Q K K G 1 0 2 1 0 1 4 0 0 0 4 2 0 0 0 1 1 0 0 1 0 0 18 1 2072.0637 P35580 P35580 1285 1302 MYH10 Myosin-10 yes yes 3 7.3331E-12 105.38 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.82029 0.82838 24.706 4 Median 1.0104 0.97315 NaN 1 0 Median 1.215 1.1471 NaN 1 0 Median 0.60153 0.6949 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66592 0.70514 NaN 1 0 Median NaN NaN NaN 0 0 Median 96551000 44175000 52376000 12279000 5630000 6649100 75788000 33457000 42331000 6303200 3730000 2573200 0 0 0 2180700 1358800 821960 0 0 0 22365 2245 23331 118070;118071;118072;118073 119211;119212;119213;119214;119215;119216 119216 6 LQNELDTLKENNLK ETLASLEDTKQTNAKLQNELDTLKENNLKN KLQNELDTLKENNLKNVEELNKSKELLTVE K L Q L K N 0 0 3 1 0 1 2 0 0 0 4 2 0 0 0 0 1 0 0 0 0 0 14 1 1670.8839 J3KP58;P30622;F5H0N7;A0A3B3ITA2 J3KP58 997 1010 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 3 0.00029745 55.196 By MS/MS 2 0.89128 0.91755 23.811 2 Median 0.89128 0.91755 23.811 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10356000 4632000 5723900 10356000 4632000 5723900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22366 1308 23332 118074;118075 119217 119217 1 LQNETLHLAVNYIDR AILVDWLVEVGEEYKLQNETLHLAVNYIDR LQNETLHLAVNYIDRFLSSMSVLRGKLQLV K L Q D R F 1 1 2 1 0 1 1 0 1 1 3 0 0 0 0 0 1 0 1 1 0 0 15 0 1797.9373 P20248 P20248 227 241 CCNA2 Cyclin-A2 yes yes 3 9.3509E-05 55.656 By matching By MS/MS By matching 1 1 2 0.99882 0.87225 43.03 4 Median NaN NaN NaN 0 0 Median 0.48639 0.43389 NaN 1 0 Median 1.2198 1.2015 NaN 1 0 Median 0.99882 0.87225 3.219 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14066000 6128300 7938100 0 0 0 233150 152880 80271 12928000 5570000 7357900 905290 405420 499870 0 0 0 0 0 0 22367 2075 23333 118076;118077;118078;118079 119218 119218 1 LQNFSYDQR TKKGMLEKIDMIRKRLQNFSYDQREMILNP DMIRKRLQNFSYDQREMILNPEGDVNSAKV R L Q Q R E 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 9 0 1169.5465 Q9NTZ6 Q9NTZ6 521 529 RBM12 RNA-binding protein 12 yes yes 2 0.00088636 92.439 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 0.78949 0.72674 53.881 7 Median 0.75161 0.72674 NaN 1 0 Median 1.287 1.1183 50.397 3 0 Median 1.1304 1.2093 NaN 1 0 Median 0.78949 0.67461 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36534 0.2974 NaN 1 0 Median 20407000 11068000 9338800 5505300 3126900 2378500 8705500 4946500 3759000 4247300 1886000 2361200 630840 339310 291530 0 0 0 1317800 769210 548560 22368 4111 23334 118080;118081;118082;118083;118084;118085;118086 119219;119220;119221;119222;119223;119224;119225;119226 119220 8 LQNIEAHLR NSMLRDCGNQAVEERLQNIEAHLRLQTGGP QAVEERLQNIEAHLRLQTGGPVPRDIYQRI R L Q L R L 1 1 1 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1092.604 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9 Q9NS73 252 260 MBIP MAP3K12-binding inhibitory protein 1 yes no 2 0.0040114 61.999 By matching By MS/MS 1 1 1.2197 1.3089 47.019 2 Median 1.6953 1.8251 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87756 0.93864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1903900 901300 1002600 453110 212120 240990 0 0 0 1450800 689180 761620 0 0 0 0 0 0 0 0 0 22369 4097 23335 118087;118088 119227;119228 119227 2 LQNILSQLR KDLDAFENETAKKVKLQNILSQLRKCVDHP TAKKVKLQNILSQLRKCVDHPYLFDGVEPE K L Q L R K 0 1 1 0 0 2 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1083.64 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C0F0 Q86WJ1 311 319 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00034134 136.16 By MS/MS 1 1.073 1.1385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.073 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12846000 5112300 7733800 0 0 0 0 0 0 12846000 5112300 7733800 0 0 0 0 0 0 0 0 0 22370 3293 23336 118089 119229;119230 119230 2 LQNIMMLLR VVEVNIPVESEVNLKLQNIMMLLRKCCNHP SEVNLKLQNIMMLLRKCCNHPYLIEYPIDP K L Q L R K 0 1 1 0 0 1 0 0 0 1 3 0 2 0 0 0 0 0 0 0 0 0 9 0 1130.6304 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 436 444 HELLS Lymphoid-specific helicase yes no 2 0.0059661 56.011 By matching By MS/MS By matching By matching 1 1 2 1 1.0302 1.1047 26.071 5 Median NaN NaN NaN 0 0 Median 0.92111 0.80699 NaN 1 0 Median 1.0302 1.1047 NaN 1 0 Median 1.0481 0.89956 33.332 2 0 Median 1.2608 1.3333 NaN 1 0 Median NaN NaN NaN 0 0 Median 5043500 2323200 2720300 0 0 0 1623100 714640 908470 2694800 1307800 1387100 194930 92689 102250 530650 208140 322510 0 0 0 22371 211 23337 118090;118091;118092;118093;118094 119231 119231 1 LQNKEHVIEALR ARVHIGQVIMSIRTKLQNKEHVIEALRRAK RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K L Q L R R 1 1 1 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1448.81 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5 F8W7C6 91 102 RPL10 60S ribosomal protein L10 yes no 2;3 3.1646E-05 97.915 By MS/MS By MS/MS By MS/MS 2 1 2 1.0393 1.0845 25.11 5 Median 0.9263 0.96778 16.101 2 0 Median 1.2639 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89607 0.95532 44.108 2 0 Median NaN NaN NaN 0 0 Median 37997000 19634000 18363000 24981000 13592000 11389000 5426400 2452100 2974300 0 0 0 0 0 0 7589800 3590500 3999200 0 0 0 22372 1084 23338 118095;118096;118097;118098;118099 119232;119233;119234;119235;119236;119237;119238 119233 7 LQNKEHVIEALRR ARVHIGQVIMSIRTKLQNKEHVIEALRRAK TKLQNKEHVIEALRRAKFKFPGRQKIHISK K L Q R R A 1 2 1 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 1 0 0 13 2 1604.9111 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5 F8W7C6 91 103 RPL10 60S ribosomal protein L10 yes no 3;4 8.1821E-16 186.91 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.0709 1.0588 14.966 7 Median 1.0374 1.0408 4.5055 2 0 Median 1.0792 0.9995 8.1478 2 0 Median NaN NaN NaN 0 0 Median 1.0207 0.88495 NaN 1 0 Median 1.2099 1.296 7.3694 2 0 Median NaN NaN NaN 0 0 Median 65943000 29965000 35979000 19035000 8944600 10091000 29837000 13314000 16523000 0 0 0 3236400 1292800 1943700 13834000 6413000 7421400 0 0 0 22373 1084 23339 118100;118101;118102;118103;118104;118105;118106 119239;119240;119241;119242;119243;119244;119245;119246;119247;119248;119249;119250;119251;119252;119253 119250 15 LQNKFDFLR WLKGMTSLQCDCTEKLQNKFDFLRSQLNDI CDCTEKLQNKFDFLRSQLNDISSFKNIYRY K L Q L R S 0 1 1 1 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 1 1179.64 Q9BTE7;E9PM04;H0YCN4 Q9BTE7 121 129 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 3 0.020902 38.567 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4125300 0 4125300 0 0 0 0 0 0 4125300 0 4125300 0 0 0 0 0 0 0 0 0 22374 3826 23340 118107 119254 119254 1 LQNLDALTNLTVLSMQSNR TNLESLFLGKNKITKLQNLDALTNLTVLSM DALTNLTVLSMQSNRLTKIEGLQNLVNLRE K L Q N R L 1 1 3 1 0 2 0 0 0 0 5 0 1 0 0 2 2 0 0 1 0 0 19 0 2130.1103 H7C003;Q15435;C9J177;C9JD73;B5MBZ8 H7C003 198 216 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.00051799 51.211 By MS/MS 1 1.432 1.2256 NaN 1 Median NaN NaN NaN 0 0 Median 1.432 1.2256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1936500 892250 1044300 0 0 0 1936500 892250 1044300 0 0 0 0 0 0 0 0 0 0 0 0 22375 1254 23341 118108 119255 119255 1 LQNLQLQPGNAK QGKLKITGNMGLAMKLQNLQLQPGNAKL__ AMKLQNLQLQPGNAKL______________ K L Q A K L 1 0 2 0 0 3 0 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 0 1322.7306 P22307 P22307 535 546 SCP2 Non-specific lipid-transfer protein yes yes 2 4.3889E-06 148.14 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2817 1.0541 11.56 6 Median 1.041 0.92872 9.4873 2 0 Median 1.3157 1.0866 3.0318 2 0 Median 1.2862 1.2279 NaN 1 0 Median 1.2929 1.0448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 220180000 97529000 122650000 101080000 46169000 54908000 98940000 42429000 56510000 16223000 7386400 8836400 3943400 1544600 2398900 0 0 0 0 0 0 22376 2099 23342 118109;118110;118111;118112;118113;118114 119256;119257;119258;119259;119260;119261;119262;119263;119264;119265;119266;119267 119262 12 LQNLQLQPGNAKL QGKLKITGNMGLAMKLQNLQLQPGNAKL__ MKLQNLQLQPGNAKL_______________ K L Q K L - 1 0 2 0 0 3 0 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 13 1 1435.8147 P22307 P22307 535 547 SCP2 Non-specific lipid-transfer protein yes yes 2 1.206E-06 119.75 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.2412 1.0653 11.251 6 Median 1.0689 0.95641 7.9721 2 0 Median 1.3791 1.1441 2.8167 2 0 Median 1.0149 0.98102 NaN 1 0 Median 1.4832 1.2091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 148010000 65929000 82086000 102430000 46903000 55526000 39397000 16067000 23329000 5130100 2575400 2554700 1058100 382720 675390 0 0 0 0 0 0 22377 2099 23343 118115;118116;118117;118118;118119;118120 119268;119269;119270;119271;119272;119273 119268 6 LQNLSLEGLR IEVSTLHGILSQCSKLQNLSLEGLRLSDPI SQCSKLQNLSLEGLRLSDPIVNTLAKNSNL K L Q L R L 0 1 1 0 0 1 1 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 10 0 1141.6455 A0A0A0MTL5;Q13309 A0A0A0MTL5 219 228 SKP2 S-phase kinase-associated protein 2 yes no 2 0.014003 39.305 By MS/MS By matching 2 1 0.97999 0.8841 11.888 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83732 0.87636 16.797 2 0 Median 1.0407 0.8841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5360800 2826100 2534700 0 0 0 0 0 0 5246500 2776300 2470200 114280 49844 64434 0 0 0 0 0 0 22378 195 23344 118121;118122;118123 119274 119274 1 LQNNNVYTIAK QIKECHLNADTVSSKLQNNNVYTIAKRNVE VSSKLQNNNVYTIAKRNVEGQDMLYQSLKL K L Q A K R 1 0 3 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 0 1276.6776 A0A087X253;P63010 A0A087X253 844 854 AP2B1 AP-2 complex subunit beta yes no 2 0.0083164 43.635 By MS/MS By MS/MS 2 1 1.1086 0.96978 29.844 3 Median NaN NaN NaN 0 0 Median 0.96307 0.82925 22.14 2 1 Median 1.1699 1.2877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18719000 8957900 9760700 0 0 0 12879000 6333600 6545800 5839100 2624200 3214900 0 0 0 0 0 0 0 0 0 22379 128 23345 118124;118125;118126 119275;119276;119277;119278 119276 4 LQNQLQGAIVIERPNVK DSDGEGESDDPEKKKLQNQLQGAIVIERPN NQLQGAIVIERPNVKWSDVAGLEGAKEALK K L Q V K W 1 1 2 0 0 3 1 1 0 2 2 1 0 0 1 0 0 0 0 2 0 0 17 1 1919.0952 O75351 O75351 116 132 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 3 1.7661E-05 50.387 By matching By MS/MS 1 1 0.87787 0.92742 17.08 2 Median 0.82365 0.82192 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93565 1.0465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12534000 7374800 5159100 6905000 3966600 2938400 0 0 0 5628900 3408200 2220700 0 0 0 0 0 0 0 0 0 22380 1661 23346 118127;118128 119279 119279 1 LQNSASATALVSR TTPRGVLHTFSPSPKLQNSASATALVSRTG PKLQNSASATALVSRTGRHSERTVSAGKGS K L Q S R T 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 0 0 13 0 1316.7048 Q86YP4 Q86YP4 551 563 GATAD2A Transcriptional repressor p66-alpha yes yes 2 1.0534E-06 147.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.96414 0.84702 13.524 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98387 0.99036 NaN 1 0 Median 0.92217 0.78504 13.391 2 1 Median 0.82584 0.84268 19.292 2 2 Median 1.0246 0.83133 NaN 1 1 Median 67822000 34813000 33009000 0 0 0 0 0 0 37584000 19112000 18472000 6199800 3139000 3060800 20838000 11182000 9655700 3200100 1379300 1820700 22381 3309 23347 118129;118130;118131;118132;118133;118134 119280;119281;119282;119283;119284;119285;119286 119284 7 LQNVEQLPPDEIK DFFSYYDSHRQSVSKLQNVEQLPPDEIKEL SKLQNVEQLPPDEIKELCQSVMPAGVDKIS K L Q I K E 0 0 1 1 0 2 2 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 13 0 1521.8039 Q92621 Q92621 1840 1852 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.012844 34.721 By matching By matching By MS/MS 1 1 1 1.0311 0.93855 7.7835 3 Median NaN NaN NaN 0 0 Median 1.1426 1.0618 NaN 1 0 Median 0.82491 0.91946 NaN 1 0 Median 1.0311 0.93855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4341400 2390700 1950700 0 0 0 487310 213020 274290 2895400 1723600 1171800 958710 454070 504640 0 0 0 0 0 0 22382 3547 23348 118135;118136;118137 119287 119287 1 LQNVQIALDYLK GDTLPREKGRMRFHRLQNVQIALDYLKRRQ FHRLQNVQIALDYLKRRQVKLVNIRNDDIT R L Q L K R 1 0 1 1 0 2 0 0 0 1 3 1 0 0 0 0 0 0 1 1 0 0 12 0 1416.7977 E9PHM6;F6QMI7;Q03001;F8W9J4;E7ETB9;E7ERX3 E9PHM6 93 104 DST Dystonin no no 2 0.012077 36.334 By MS/MS By matching 3 1 1.1825 1.1107 8.8475 4 Median NaN NaN NaN 0 0 Median 1.2352 1.0907 8.0385 3 0 Median 1.0855 1.1953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3967000 1632000 2335000 0 0 0 2691800 1063100 1628700 1275200 568940 706260 0 0 0 0 0 0 0 0 0 22383 934 23349 118138;118139;118140;118141 119288 119288 1 LQNVQIALDYLR GDSLPREKGRMRFHKLQNVQIALDYLRHRQ FHKLQNVQIALDYLRHRQVKLVNIRNDDIA K L Q L R H 1 1 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1444.8038 Q15149;H0YDN1;E9PMV1;E9PKG0;E9PQ28;E9PIA2 Q15149 237 248 PLEC Plectin yes no 2 1.8668E-09 173.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.3574 1.2103 21.583 6 Median 1.5292 1.4847 NaN 1 0 Median 1.4119 1.1429 NaN 1 0 Median 1.0385 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4604 1.4798 20.324 2 0 Median 1.15 0.92946 NaN 1 0 Median 48613000 20410000 28202000 27134000 11137000 15998000 11614000 4795900 6818400 3329800 1364700 1965100 0 0 0 3546300 1715200 1831100 2987800 1397800 1590000 22384 2933 23350 118142;118143;118144;118145;118146;118147 119289;119290;119291;119292;119293;119294;119295;119296;119297;119298 119296 10 LQPEEADVPAYPK ANSGELDKMDEKRTRLQPEEADVPAYPKVA TRLQPEEADVPAYPKVATVPQSEKKPSKYP R L Q P K V 2 0 0 1 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 13 0 1455.7246 Q9BTC0 Q9BTC0 1218 1230 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00038358 74.841 By MS/MS By MS/MS By matching 2 2 1 0.54274 0.5771 12.925 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53382 0.57881 0.41819 2 1 Median 0.61768 0.5392 24.667 2 0 Median NaN NaN NaN 0 0 Median 0.59605 0.53992 NaN 1 0 Median 53900000 34749000 19151000 0 0 0 0 0 0 48144000 31263000 16881000 5040700 2966300 2074500 0 0 0 715290 519920 195370 22385 3824 23351 118148;118149;118150;118151;118152 119299;119300;119301;119302;119303 119301 5 LQPFATEADVEEALR LEAIVRIAEALSKMKLQPFATEADVEEALR LQPFATEADVEEALRLFQVSTLDAALSGTL K L Q L R L 3 1 0 1 0 1 3 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 15 0 1687.8417 P33992;B1AHB1 P33992 628 642 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 6.9056E-07 96.64 By MS/MS By MS/MS By matching 3 3 1 0.78146 0.73593 53.546 7 Median 0.78146 0.74747 1.6447 3 1 Median 0.9971 0.8519 16.293 3 0 Plateau NaN NaN NaN 0 0 Median 0.20579 0.18235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50462000 26061000 24401000 29231000 15426000 13805000 20760000 10251000 10509000 0 0 0 470950 383560 87382 0 0 0 0 0 0 22386 2224 23352 118153;118154;118155;118156;118157;118158;118159 119304;119305;119306;119307;119308;119309;119310 119305 7 LQPFLQR EYVEVLQELQRLESRLQPFLQRYYEVLGAA ELQRLESRLQPFLQRYYEVLGAAATTDYNN R L Q Q R Y 0 1 0 0 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 7 0 900.51814 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2 P46379 290 296 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.025249 54.525 By MS/MS 1 1.0251 0.86087 NaN 1 Median NaN NaN NaN 0 0 Median 1.0251 0.86087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6952300 3440600 3511700 0 0 0 6952300 3440600 3511700 0 0 0 0 0 0 0 0 0 0 0 0 22387 8 23353 118160 119311;119312 119311 2 LQPFNSSEDSTNLVPLVVESSKPPEVDAPDK EEEDSTSEVLDEELKLQPFNSSEDSTNLVP VVESSKPPEVDAPDKTPRIPDSEMLMDEGT K L Q D K T 1 0 2 3 0 1 3 0 0 0 3 2 0 1 5 5 1 0 0 4 0 0 31 1 3337.6565 D6RB01;Q9Y6X4 D6RB01 398 428 FAM169A Soluble lamin-associated protein of 75 kDa yes no 3 0.015758 15.162 By MS/MS 1 0.36335 0.41571 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36335 0.41571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1718600 1155300 563310 0 0 0 0 0 0 1718600 1155300 563310 0 0 0 0 0 0 0 0 0 22388 814 23354 118161 119313 119313 1 LQPHEFQGGTFTISNLGMFGIK ANDVVSLATKAREGKLQPHEFQGGTFTISN GGTFTISNLGMFGIKNFSAIINPPQACILA K L Q I K N 0 0 1 0 0 2 1 4 1 2 2 1 1 3 1 1 2 0 0 0 0 0 22 0 2421.2151 P10515;H0YDD4;E9PEJ4 P10515 553 574 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 3 0.010367 19.549 By MS/MS By MS/MS 1 1 1.1003 0.99156 19.325 2 Median 0.91928 0.86491 NaN 1 0 Median 1.317 1.1367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13177000 6464300 6712500 10755000 5498200 5257200 2421400 966090 1455300 0 0 0 0 0 0 0 0 0 0 0 0 22389 1938 23355 118162;118163 119314;119315;119316 119314 3 LQPHLLEMLIQLPANSVTK ENKPSYIHYQPAQDRLQPHLLEMLIQLPAN LLEMLIQLPANSVTKVSIQFERALLKWTEY R L Q T K V 1 0 1 0 0 2 1 0 1 1 5 1 1 0 2 1 1 0 0 1 0 0 19 0 2144.2027 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPR6;A0A1W2PPK4;A0A1W2PR92;H7C2Y2;A0A1W2PR73 Q969N2 423 441 PIGT GPI transamidase component PIG-T yes no 3 0.057601 8.4943 By matching By MS/MS 1 1 1.4148 1.2894 39.744 2 Median 1.7761 1.7078 NaN 1 0 Median 1.1269 0.97348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2237100 844740 1392400 189080 104360 84725 2048100 740390 1307700 0 0 0 0 0 0 0 0 0 0 0 0 22390 331 23356 118164;118165 119317;119318 119318 2 LQPHPQLSPEIR DLATDQKEALLELLRLQPHPQLSPEIRREL LLRLQPHPQLSPEIRRELQSAVPRDVEDVP R L Q I R R 0 1 0 0 0 2 1 0 1 1 2 0 0 0 3 1 0 0 0 0 0 0 12 0 1413.7728 Q13895 Q13895 407 418 BYSL Bystin yes yes 3 2.4676E-05 92.19 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 0.73857 0.71122 26.363 7 Median 0.73274 0.73116 NaN 1 0 Median 0.73857 0.63531 NaN 1 0 Median 0.80578 0.80871 NaN 1 0 Median 1.0439 0.88782 31.366 2 0 Median 0.5999 0.60067 NaN 1 0 Median 0.55232 0.47511 NaN 1 0 Median 33600000 18637000 14963000 2290900 1330700 960200 2351200 1492200 859030 4290700 2052500 2238200 14034000 7631300 6402600 8783500 5006600 3777000 1850000 1123800 726200 22391 2845 23357 118166;118167;118168;118169;118170;118171;118172 119319;119320;119321;119322 119322 4 LQPLLNHLSHSYTGQDYSTQGNVGK ALTARSLPAVQSDERLQPLLNHLSHSYTGQ SYTGQDYSTQGNVGKISLDQIDLLSTKSFP R L Q G K I 0 0 2 1 0 3 0 3 2 0 4 1 0 0 1 3 2 0 2 1 0 0 25 0 2756.3518 P49643 P49643 246 270 PRIM2 DNA primase large subunit yes yes 3;4 7.2417E-13 57.278 By MS/MS By MS/MS By matching 4 2 1 0.78079 0.75785 19.156 6 Median 0.70285 0.65829 16.778 3 0 Median NaN NaN NaN 0 0 Median 0.78079 0.75785 4.7902 2 0 Median 1.1627 1.0007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66411000 37431000 28980000 36343000 20982000 15361000 0 0 0 28593000 15758000 12835000 1474900 691460 783470 0 0 0 0 0 0 22392 2389 23358 118173;118174;118175;118176;118177;118178;118179 119323;119324;119325;119326;119327;119328;119329 119326 7 LQPLSPVPSDIEISR LREQQHRRWRLHCLKLQPLSPVPSDIEISR LQPLSPVPSDIEISRGQTPKAVDVLAKEIG K L Q S R G 0 1 0 1 0 1 1 0 0 2 2 0 0 0 3 3 0 0 0 1 0 0 15 0 1649.8988 A0A087WVM4;B7ZM99;Q6UB35;H0Y327 A0A087WVM4 288 302 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.00016642 76.522 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.58491 0.54475 19.798 6 Median 0.54439 0.52915 11.359 2 0 Median 0.6253 0.55515 9.9233 2 0 Median 0.78143 0.83833 NaN 1 0 Median 0.57124 0.50904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8195000 5128300 3066600 5490800 3687500 1803300 1220200 702560 517660 1398200 680540 717620 85747 57733 28014 0 0 0 0 0 0 22393 43 23359 118180;118181;118182;118183;118184;118185 119330;119331;119332 119331 3 LQPLTQAAYVGEAR LYSQTAPLRAELAERLQPLTQAAYVGEARR RLQPLTQAAYVGEARRRLERVRRRRLRLRE R L Q A R R 3 1 0 0 0 2 1 1 0 0 2 0 0 0 1 0 1 0 1 1 0 0 14 0 1515.8045 Q8N8D1 Q8N8D1 223 236 PDCD7 Programmed cell death protein 7 yes yes 2 1.3946E-05 87.363 By MS/MS 1 0.61459 0.63429 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61459 0.63429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4817200 2887100 1930100 0 0 0 0 0 0 4817200 2887100 1930100 0 0 0 0 0 0 0 0 0 22394 3395 23360 118186 119333 119333 1 LQPSFEALKR ECISDNKSATVELEKLQPSFEALKRRGEEL VELEKLQPSFEALKRRGEELIGRSQGADKD K L Q K R R 1 1 0 0 0 1 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 10 1 1187.6663 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6045 6054 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00018493 86.898 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2736100 0 2736100 2736100 0 2736100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22395 1220 23361 118187;118188 119334;119335 119335 2 LQPSSTSESMDQLLNK RKQIDDLKKFKNDFRLQPSSTSESMDQLLN QPSSTSESMDQLLNKNREGEKSRDLIKDKI R L Q N K N 0 0 1 1 0 2 1 0 0 0 3 1 1 0 1 4 1 0 0 0 0 0 16 0 1776.8564 F8W0B5;H0YH87;A0A2R8Y7P6;A0A2R8YDM9;F8VQP2;F8WB06;V9GY86;A0A2R8Y7E6;A0A2R8Y5A6;Q99700 F8W0B5 184 199 ATXN2 Ataxin-2 yes no 2 8.0788E-05 67.153 By MS/MS 1 0.81436 0.80242 NaN 1 Median 0.81436 0.80242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3614900 2136900 1478000 3614900 2136900 1478000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22396 370 23362 118189 119336 119336 1 LQPTWNDLGDKYNSMEDAK HFVMFFAPWCGHCQRLQPTWNDLGDKYNSM WNDLGDKYNSMEDAKVYVAKVDCTAHSDVC R L Q A K V 1 0 2 3 0 1 1 1 0 0 2 2 1 0 1 1 1 1 1 0 0 0 19 1 2224.0106 Q8NBS9 Q8NBS9 95 113 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 3 1.1646E-06 52.185 By MS/MS By matching By matching 1 1 1 1.0199 1.001 4.2679 3 Median 1.0199 0.97526 NaN 1 0 Median 1.1238 1.0601 NaN 1 0 Median 0.95434 1.001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16063000 7152300 8910700 9698800 4262700 5436100 636980 314300 322680 5727300 2575300 3152000 0 0 0 0 0 0 0 0 0 22397 3410 23363 118190;118191;118192 119337;119338 119338 2 LQQAQEMLK VFKHKDLQQQLVDAKLQQAQEMLKEAEERH QLVDAKLQQAQEMLKEAEERHQREKDFLLK K L Q L K E 1 0 0 0 0 3 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1087.5696 P40222 P40222 341 349 TXLNA Alpha-taxilin yes yes 2 0.0054443 71.501 By matching By MS/MS 1 2 0.83093 0.72018 42.905 3 Median NaN NaN NaN 0 0 Median 0.6524 0.56323 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1242 0.96685 41.655 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7946200 3946600 3999600 0 0 0 2362800 1422900 939850 0 0 0 5583400 2523700 3059700 0 0 0 0 0 0 22398 2284 23364 118193;118194;118195 119339;119340 119340 1 LQQEFEDKLEVEQQNKR KYERAVREVDFTKKRLQQEFEDKLEVEQQN QEFEDKLEVEQQNKRQLERRLGDLQADSEE R L Q K R Q 0 1 1 1 0 4 4 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 17 2 2160.0811 Q92614;A0A0D9SFK2 Q92614 1389 1405 MYO18A Unconventional myosin-XVIIIa yes no 4 0.063428 18.58 By MS/MS 1 0.92418 1.0344 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92418 1.0344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2014600 1135700 878870 0 0 0 0 0 0 0 0 0 2014600 1135700 878870 0 0 0 0 0 0 22399 267 23365 118196 119341 119341 1 LQQEIENLKAER QEQEFKAHCREEMTRLQQEIENLKAERAPR MTRLQQEIENLKAERAPRGDEKTLSSGEPP R L Q E R A 1 1 1 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1469.7838 Q567U6;F8W9X7;H7C050 Q567U6 414 425 CCDC93 Coiled-coil domain-containing protein 93 yes no 3 0.001273 60.628 By MS/MS 2 1.07 1.0961 NaN 1 Median 1.07 1.0961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2673200 1360100 1313200 2673200 1360100 1313200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22400 1089 23366 118197;118198 119342;119343 119342 2 LQQELDDLLVDLDHQR EKVAAYDKLEKTKTRLQQELDDLLVDLDHQ QQELDDLLVDLDHQRQSACNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 5 0 0 0 0 0 0 0 0 1 0 0 16 0 1948.9854 P35579 P35579 1418 1433 MYH9 Myosin-9 yes yes 2;3 1.2304E-26 150.12 By MS/MS By MS/MS By matching By MS/MS 3 8 2 1 1.1094 0.95471 21.714 14 Median 1.3017 1.2214 16.159 3 0 Median 1.1094 0.94267 24.286 8 2 Median 0.89427 0.99382 22.13 2 0 Median NaN NaN NaN 0 0 Median 1.279 1.359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1691000000 793430000 897530000 36852000 15929000 20923000 1649100000 775200000 873910000 4184500 1990900 2193600 0 0 0 807090 308030 499060 0 0 0 22401 2244 23367 118199;118200;118201;118202;118203;118204;118205;118206;118207;118208;118209;118210;118211;118212 119344;119345;119346;119347;119348;119349;119350;119351;119352 119350 9 LQQELDDLTVDLDHQR EKALAYDKLEKTKNRLQQELDDLTVDLDHQ QQELDDLTVDLDHQRQVASNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 4 0 0 0 0 0 1 0 0 1 0 0 16 0 1936.949 P35580 P35580 1425 1440 MYH10 Myosin-10 yes yes 2;3 3.5251E-10 99.003 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1.0801 0.98983 22.037 7 Median 1.0801 1.0241 4.8077 2 0 Median 1.2306 1.0439 NaN 1 0 Median 0.61004 0.67125 6.5849 2 0 Median NaN NaN NaN 0 0 Median 1.0801 1.1339 NaN 1 0 Median 1.1535 0.97569 NaN 1 0 Median 97314000 47970000 49344000 46016000 22295000 23720000 27731000 11806000 15925000 19480000 11330000 8149900 0 0 0 3915300 2459900 1455400 172270 79400 92871 22402 2245 23368 118213;118214;118215;118216;118217;118218;118219 119353;119354;119355;119356;119357;119358;119359 119354 7 LQQELEFLEVQEEYIKDEQK PEPEDLEDLYSRYKKLQQELEFLEVQEEYI EFLEVQEEYIKDEQKNLKKEFLHAQEEVKR K L Q Q K N 0 0 0 1 0 4 6 0 0 1 3 2 0 1 0 0 0 0 1 1 0 0 20 1 2537.2537 P43686 P43686 47 66 PSMC4 26S protease regulatory subunit 6B yes yes 3 0.02624 14.614 By matching By matching By MS/MS 1 2 1 1.093 1.1176 8.2273 4 Median 1.2939 1.2508 NaN 1 0 Median 0.99982 1.0596 3.957 2 0 Median 1.0894 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10530000 5119600 5409900 1739100 912500 826640 5458200 2276100 3182000 3332300 1931000 1401300 0 0 0 0 0 0 0 0 0 22403 2327 23369 118220;118221;118222;118223 119360 119360 1 LQQENSILR LQEQLENGPNTQLARLQQENSILRDALNQA NTQLARLQQENSILRDALNQATSQVESKQN R L Q L R D 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1099.5986 Q9P2E9;A0A087WVV2;F8W7S5;H0YDJ4;H9KV85;E9PN67;C9J066;Q8N4C6 Q9P2E9 798 806 RRBP1;NIN Ribosome-binding protein 1;Ninein yes no 2 0.00043967 127.56 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.5572 1.3055 38.949 5 Median 1.182 1.1854 NaN 1 1 Median 2.1512 1.9737 58.448 2 0 Median NaN NaN NaN 0 0 Median 1.7032 1.4509 NaN 1 0 Median 1.1382 1.178 NaN 1 0 Median NaN NaN NaN 0 0 Median 13539000 5846000 7692800 1995900 825790 1170100 8932700 3903600 5029100 0 0 0 1711100 706480 1004600 899000 410130 488870 0 0 0 22404 4222 23370 118224;118225;118226;118227;118228 119361;119362;119363;119364;119365 119363 5 LQQESTFLFHGNK VAAETQSPSLFGSTKLQQESTFLFHGNKTE TKLQQESTFLFHGNKTEDTPDKKMEVASEK K L Q N K T 0 0 1 0 0 2 1 1 1 0 2 1 0 2 0 1 1 0 0 0 0 0 13 0 1547.7732 Q9UKX7 Q9UKX7 230 242 NUP50 Nuclear pore complex protein Nup50 yes yes 3 0.00025422 72.496 By MS/MS By MS/MS 1 2 1.2132 1.1049 10.305 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0621 1.0272 NaN 1 0 Median 1.3857 1.1884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35153000 13663000 21490000 0 0 0 0 0 0 27567000 11091000 16477000 7586000 2572400 5013600 0 0 0 0 0 0 22405 4317 23371 118229;118230;118231 119366;119367;119368;119369 119368 4 LQQFFNER HNSFEQFCINYCNEKLQQFFNERILKEEQE INYCNEKLQQFFNERILKEEQELYQKEGLG K L Q E R I 0 1 1 0 0 2 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1080.5352 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 480 487 MYO6 Unconventional myosin-VI yes no 2 0.01337 53.166 By MS/MS By matching By matching By matching 2 4 2 1 1.3408 1.092 44.894 9 Median 1.1138 1.0749 2.2345 2 0 Median 1.4689 1.2658 40.598 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1516 1.2987 103.43 2 0 Median 1.3408 1.0533 NaN 1 0 Median 26057000 12335000 13722000 13015000 6464700 6550100 7608800 3336100 4272700 0 0 0 0 0 0 4998500 2314000 2684600 435100 220110 215000 22406 164 23372 118232;118233;118234;118235;118236;118237;118238;118239;118240 119370 119370 1 LQQFLEFKE EHLNAVQASAEHQKRLQQFLEFKE______ AEHQKRLQQFLEFKE_______________ R L Q K E - 0 0 0 0 0 2 2 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 1 1180.6128 Q9BTX1 Q9BTX1 666 674 NDC1 Nucleoporin NDC1 yes yes 2 0.025185 41.448 By matching By matching By MS/MS By matching 1 1 2 1 1.1623 1.1577 32.291 5 Median 1.1623 1.1577 NaN 1 0 Median 1.273 1.1131 NaN 1 0 Median 1.0682 1.1638 3.4454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.7203 2.3609 NaN 1 0 Median 50910000 23850000 27060000 5824900 2799200 3025600 2293200 927800 1365400 42654000 20089000 22565000 0 0 0 0 0 0 137160 33413 103740 22407 3831 23373 118241;118242;118243;118244;118245 119371 119371 1 LQQGIVTSTTQQMIDR RNHETRKYLQEQAYRLQQGIVTSTTQQMID QQGIVTSTTQQMIDRICVKVQDHLNSLRNC R L Q D R I 0 1 0 1 0 4 0 1 0 2 1 0 1 0 0 1 3 0 0 1 0 0 16 0 1817.9305 A0A0U1RQQ1;Q5VZK9 A0A0U1RQQ1 272 287 LRRC16A Leucine-rich repeat-containing protein 16A yes no 2 0.0080407 29.341 By matching By MS/MS 1 1 1.0861 1.149 13.968 2 Median 1.2554 1.2683 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93957 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5692400 2642900 3049500 3255200 1318400 1936800 0 0 0 2437200 1324500 1112700 0 0 0 0 0 0 0 0 0 22408 303 23374 118246;118247 119372 119372 1 LQQGYNAMGFSQGGQFLR SQVTTVCQALAKDPKLQQGYNAMGFSQGGQ GYNAMGFSQGGQFLRAVAQRCPSPPMINLI K L Q L R A 1 1 1 0 0 4 0 4 0 0 2 0 1 2 0 1 0 0 1 0 0 0 18 0 2000.9527 A0A2C9F2P4;A0A286YFF7;P50897;E9PK48;Q5T0S4;A0A286YFE3;A0A286YFL8 A0A2C9F2P4 104 121 PPT1 Palmitoyl-protein thioesterase 1 yes no 2;3 1.0133E-11 108.59 By MS/MS By matching By MS/MS By matching 5 4 1 1 1.5669 1.4057 20.535 11 Median 1.5038 1.4057 17.143 5 1 Median 1.5416 1.309 7.7888 4 0 Median 2.1892 2.134 NaN 1 0 Median 2.233 1.8745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79866000 30066000 49800000 65461000 24645000 40816000 11797000 4518500 7278200 2076600 747420 1329100 531900 154840 377050 0 0 0 0 0 0 22409 352 23375;23376 118248;118249;118250;118251;118252;118253;118254;118255;118256;118257;118258 119373;119374;119375;119376;119377;119378;119379 119375 168 7 LQQHQSMPGTMAEAEDLDGGTLSR PLCLAEQDFISKFFKLQQHQSMPGTMAEAE TMAEAEDLDGGTLSRQHNCGTPLPVSSEKD K L Q S R Q 2 1 0 2 0 3 2 3 1 0 3 0 2 0 1 2 2 0 0 0 0 0 24 0 2571.1693 Q9NV70 Q9NV70 539 562 EXOC1 Exocyst complex component 1 yes yes 3 4.0505E-08 45.972 By matching By MS/MS By matching 1 1 1 0.86693 0.92182 21.26 3 Median 0.75067 0.72585 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86693 0.92182 NaN 1 0 Median 1.2963 1.1092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13411000 7290200 6121300 4824200 2848200 1976000 0 0 0 7892000 4042600 3849400 695340 399380 295970 0 0 0 0 0 0 22410 4125 23377 118259;118260;118261 119380 119380 1 LQQIAAALENK LEEDPAAQKMQLAFRLQQIAAALENKVTDL LAFRLQQIAAALENKVTDL___________ R L Q N K V 3 0 1 0 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1197.6717 O15031 O15031 1824 1834 PLXNB2 Plexin-B2 yes yes 2 0.0020823 55.461 By MS/MS By matching 1 1 1.2983 1.2143 18.834 2 Median 1.0879 1.0629 NaN 1 0 Median 1.5494 1.3873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3695700 1871200 1824500 2631000 1397300 1233700 1064700 473870 590830 0 0 0 0 0 0 0 0 0 0 0 0 22411 1514 23378 118262;118263 119381;119382 119382 2 LQQLALGR SLSPGGAALGYRDYRLQQLALGRLPPPPPP LGYRDYRLQQLALGRLPPPPPPPLPRDLER R L Q G R L 1 1 0 0 0 2 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 897.5396 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 263 270 RBM15 Putative RNA-binding protein 15 yes no 2 0.0025202 123.1 By MS/MS By MS/MS By MS/MS 1 1 1 1.1195 0.95501 3.7467 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95854 1.0183 NaN 1 0 Median 1.1195 0.95355 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1732 0.95501 NaN 1 0 Median 12520000 6148200 6371300 0 0 0 0 0 0 9486400 4686200 4800200 1784600 877460 907120 0 0 0 1248600 584530 664050 22412 60 23379 118264;118265;118266 119383;119384;119385 119383 3 LQQLEALR RQAFLSGRSRPLRFRLQQLEALRRMVQERE SRPLRFRLQQLEALRRMVQEREKDILTAIA R L Q L R R 1 1 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 969.56073 P51648;J3QRD1;I3L0X1;J3KTG1;J3QKK9;C9JGJ2 P51648 24 31 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 0.0072183 67.981 By MS/MS By MS/MS 1 1 1.1567 1.0679 31.994 2 Median 0.8535 0.85166 NaN 1 0 Median 1.5675 1.339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5568500 2424900 3143500 2319700 1140500 1179200 3248700 1284400 1964400 0 0 0 0 0 0 0 0 0 0 0 0 22413 1349 23380 118267;118268 119386;119387 119386 2 LQQLEALRR RQAFLSGRSRPLRFRLQQLEALRRMVQERE RPLRFRLQQLEALRRMVQEREKDILTAIAA R L Q R R M 1 2 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 1 1125.6618 P51648;J3QRD1;I3L0X1;J3KTG1;J3QKK9;C9JGJ2 P51648 24 32 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 0.029743 38.792 By MS/MS By matching 1 1 1.0997 1.0495 18.972 2 Median 0.90878 0.91773 NaN 1 0 Median 1.3308 1.2001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055800 3061200 2994700 4870200 2579200 2291000 1185600 481950 703650 0 0 0 0 0 0 0 0 0 0 0 0 22414 1349 23381 118269;118270 119388 119388 1 LQQLEDK VGNVTACFILPDLGKLQQLEDKLNNELLAK FILPDLGKLQQLEDKLNNELLAKFLEKKYA K L Q D K L 0 0 0 1 0 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 872.46035 CON__P34955 CON__P34955 282 288 yes yes 2 0.020129 77.741 By MS/MS 1 0.080547 0.068677 NaN 1 Median NaN NaN NaN 0 0 Median 0.080547 0.068677 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4273900 3983200 290640 0 0 0 4273900 3983200 290640 0 0 0 0 0 0 0 0 0 0 0 0 + 22415 763 23382 118271 119389 119389 1 LQQLEDKLNNELLAK VGNVTACFILPDLGKLQQLEDKLNNELLAK LQQLEDKLNNELLAKFLEKKYASSANLHLP K L Q A K F 1 0 2 1 0 2 2 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 15 1 1767.9731 CON__P34955 CON__P34955 282 296 yes yes 2;3 4.5298E-09 109.24 By MS/MS By MS/MS 3 2 0.0047589 0.0046572 12.545 2 Median 0.0046387 0.0042619 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.0048823 0.0050892 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 275860000 274910000 947050 255490000 254590000 896860 0 0 0 20368000 20318000 50192 0 0 0 0 0 0 0 0 0 + 22416 763 23383 118272;118273;118274;118275;118276 119390;119391;119392;119393;119394;119395 119392 6 LQQLFNHTMFILEQEEYQR LNSFEQLCINYTNEKLQQLFNHTMFILEQE FNHTMFILEQEEYQREGIEWNFIDFGLDLQ K L Q Q R E 0 1 1 0 0 4 3 0 1 1 3 0 1 2 0 0 1 0 1 0 0 0 19 0 2466.2002 P35579;P35580 P35579 476 494 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 6.3141E-69 180.14 By MS/MS By MS/MS By matching 3 6 1 1.0852 0.92904 27.268 10 Median 1.2255 1.1899 5.0495 3 0 Median 1.0786 0.91427 10.634 6 2 Median 0.46346 0.49512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 292880000 137860000 155020000 33476000 14749000 18727000 258900000 122840000 136060000 504120 269640 234480 0 0 0 0 0 0 0 0 0 22417 2244;2245 23384;23385 118277;118278;118279;118280;118281;118282;118283;118284;118285;118286 119396;119397;119398;119399;119400;119401;119402;119403;119404 119402 992 9 LQQLGEAHQAETEVLR ELEEERAGRKGLEARLQQLGEAHQAETEVL QQLGEAHQAETEVLRRELAEAMAAQHTAES R L Q L R R 2 1 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 16 0 1820.9381 A0A087WY61;F5H4J1;Q14980 Q14980 771 786 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 8.2612E-15 179.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 1.0626 0.95426 18.072 12 Median NaN NaN NaN 0 0 Median 1.1304 0.95983 1.3103 2 0 Median 0.87027 0.94852 29.673 3 0 Median 1.1525 1.0209 18.229 3 0 Median 0.94969 0.96805 9.3252 2 0 Median 1.0491 0.87346 12.999 2 0 Median 290540000 149490000 141050000 0 0 0 34904000 15601000 19303000 160560000 85518000 75039000 38804000 17441000 21363000 53018000 29384000 23633000 3260100 1546400 1713800 22418 2905;77 23386 118287;118288;118289;118290;118291;118292;118293;118294;118295;118296;118297;118298 119405;119406;119407;119408;119409;119410;119411;119412;119413;119414;119415;119416;119417;119418;119419;119420;119421;119422 119408 18 LQQLGEAHQAETEVLRR ELEEERAGRKGLEARLQQLGEAHQAETEVL QLGEAHQAETEVLRRELAEAMAAQHTAESE R L Q R R E 2 2 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 17 1 1977.0392 A0A087WY61;F5H4J1;Q14980 Q14980 771 787 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3;4 1.8655E-64 238.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 7 2 6 3 1.0158 1.1627 21.701 21 Median 1.3099 1.4008 16.941 2 0 Median 1.1905 1.2022 4.7282 2 1 Median 0.95687 1.1969 12.778 7 3 Median 1.2264 1.1106 12.7 2 1 Median 0.8277 0.89931 22.231 5 0 Median 1.1268 1.0186 14.828 3 0 Median 1161000000 576440000 584520000 29916000 11698000 18218000 12244000 4840700 7403200 891780000 447310000 444470000 13046000 5807500 7238300 209090000 104550000 104540000 4877700 2228700 2649000 22419 2905;77 23387 118299;118300;118301;118302;118303;118304;118305;118306;118307;118308;118309;118310;118311;118312;118313;118314;118315;118316;118317;118318;118319;118320 119423;119424;119425;119426;119427;119428;119429;119430;119431;119432;119433;119434;119435;119436;119437;119438;119439;119440;119441;119442;119443;119444;119445;119446;119447;119448;119449;119450;119451;119452 119435 30 LQQLGLHQPR QKLLFSATLTQNPEKLQQLGLHQPRLFSTG QNPEKLQQLGLHQPRLFSTGLAHRGLEDTD K L Q P R L 0 1 0 0 0 3 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 10 0 1188.6727 Q8N8A6 Q8N8A6 441 450 DDX51 ATP-dependent RNA helicase DDX51 yes yes 3 0.025111 33.961 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 794740 0 794740 0 0 0 0 0 0 794740 0 794740 0 0 0 0 0 0 0 0 0 22420 3394 23388 118321 119453 119453 1 LQQLKDETGELSSADEK HNQIRNMDSMPELQKLQQLKDETGELSSAD QLKDETGELSSADEKRYRALKRTAERELLM K L Q E K R 1 0 0 2 0 2 3 1 0 0 3 2 0 0 0 2 1 0 0 0 0 0 17 1 1889.9218 Q92900 Q92900 588 604 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.062951 18.939 By MS/MS 1 0.91068 0.86748 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91068 0.86748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2305800 1207000 1098800 0 0 0 0 0 0 0 0 0 2305800 1207000 1098800 0 0 0 0 0 0 22421 3564 23389 118322 119454 119454 1 LQQLKDETGELSSADEKR HNQIRNMDSMPELQKLQQLKDETGELSSAD LKDETGELSSADEKRYRALKRTAERELLMN K L Q K R Y 1 1 0 2 0 2 3 1 0 0 3 2 0 0 0 2 1 0 0 0 0 0 18 2 2046.0229 Q92900 Q92900 588 605 UPF1 Regulator of nonsense transcripts 1 yes yes 3 4.5321E-13 129.11 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0458 1.1887 26.215 5 Median 1.0458 1.1887 NaN 1 0 Median 0.83579 0.82802 NaN 1 0 Median 1.3584 1.5478 8.9692 2 2 Median 1.0163 1.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26993000 14236000 12757000 8147100 4232200 3914800 7586400 4737000 2849500 8526600 3883100 4643400 2733000 1383400 1349600 0 0 0 0 0 0 22422 3564 23390 118323;118324;118325;118326;118327 119455;119456;119457;119458;119459;119460 119455 6 LQQLLQR YEKYKKEDDLNQKKRLQQLLQRALINSQEL DDLNQKKRLQQLLQRALINSQELGDEKIQI R L Q Q R A 0 1 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 897.5396 C9J4X5;Q9H160;Q96EU6 C9J4X5 42 48 ING2;RRP36 Inhibitor of growth protein 2;Ribosomal RNA processing protein 36 homolog yes no 2 0.00076553 137.44 By MS/MS By MS/MS By matching 1 1 1 0.95854 1.0183 18.154 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95854 1.0183 NaN 1 0 Median 1.6262 1.3561 NaN 1 1 Median 0.91697 0.96877 NaN 1 0 Median NaN NaN NaN 0 0 Median 15244000 7115100 8129300 0 0 0 0 0 0 9486400 4686200 4800200 2316700 800340 1516400 3441300 1628600 1812800 0 0 0 22423 675 23391 118328;118329;118330 119461;119462 119461 2 LQQLPADFGR CGLTHLVKLDLSKNKLQQLPADFGRLVNLQ LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K L Q G R L 1 1 0 1 0 2 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1143.6037 Q96AG4 Q96AG4 74 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00014445 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 2 1 2 1.221 1.1014 41.188 14 Median 1.0496 1.0013 7.054 2 0 Median 1.2687 1.0816 54.382 5 0 Median 1.6471 1.5897 49.344 2 0 Median 1.5085 1.2551 34.907 2 0 Median 1.9775 2.0149 NaN 1 0 Median 1.2333 0.97439 23.748 2 0 Median 281660000 129340000 152310000 147480000 71046000 76435000 31882000 15177000 16706000 61095000 25605000 35489000 27271000 12285000 14986000 9083500 3121500 5962000 4843900 2108300 2735600 22424 3600 23392 118331;118332;118333;118334;118335;118336;118337;118338;118339;118340;118341;118342;118343;118344 119463;119464;119465;119466;119467;119468;119469;119470;119471;119472;119473;119474;119475;119476;119477;119478 119467 16 LQQLVENIDKK FGGLLDSMQTSETSKLQQLVENIDKKMTDP ETSKLQQLVENIDKKMTDPNQCVICHRVLS K L Q K K M 0 0 1 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1326.7507 A0A140TA74;A0A140TA70;Q9BXA9;A9JR48;A0A087WXW6;H3BSM9;Q9NSC2 A0A140TA74 660 670 SALL3;SALL1 Sal-like protein 3;Sal-like protein 1 yes no 2;3 0.00026509 76.943 By MS/MS By MS/MS 2 1 0.99741 1.0545 10.884 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89664 1.0275 15.246 2 0 Median 1.1273 1.0545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9791500 5147500 4643900 0 0 0 0 0 0 8448200 4572800 3875400 1343200 574750 768490 0 0 0 0 0 0 22425 315 23393 118345;118346;118347 119479;119480 119479 2 LQQQAALSPTTAPAVSSVSK AFVKALQQEQEIEQRLQQQAALSPTTAPAV ALSPTTAPAVSSVSKQETIMRHHTLRQAPQ R L Q S K Q 4 0 0 0 0 3 0 0 0 0 2 1 0 0 2 4 2 0 0 2 0 0 20 0 1983.0637 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 463 482 GATAD2B Transcriptional repressor p66-beta yes no 2;3 1.1973E-18 112.42 By MS/MS By MS/MS By MS/MS 2 4 2 0.79478 0.73538 19.906 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64657 0.64878 4.8666 2 1 Median 1.0845 0.98462 14.542 4 0 Linear 0.64264 0.65763 24.103 2 0 Median NaN NaN NaN 0 0 Median 51613000 31374000 20239000 0 0 0 0 0 0 35670000 22481000 13189000 6493200 3072400 3420900 9450300 5820500 3629700 0 0 0 22426 311 23394 118348;118349;118350;118351;118352;118353;118354;118355 119481;119482;119483;119484;119485;119486;119487;119488 119482 8 LQQQHSEQPPLQPSPVMTR RPQETEEMKTRRTTRLQQQHSEQPPLQPSP HSEQPPLQPSPVMTRRGLRDSHSSEEDEAS R L Q T R R 0 1 0 0 0 5 1 0 1 0 2 0 1 0 4 2 1 0 0 1 0 0 19 0 2200.1059 A0A0A0MSK5;Q5JTV8;H0YDU3;J3KN66 J3KN66 130 148 TOR1AIP1 Torsin-1A-interacting protein 1 no no 3 9.4525E-20 106.31 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 1 2 0.58562 0.54393 20.86 8 Median 0.51211 0.50964 NaN 1 1 Median 0.62864 0.54519 NaN 1 0 Median 0.54554 0.54268 30.335 3 0 Median 0.8301 0.71155 NaN 1 0 Median 0.58347 0.5774 23.924 2 1 Median NaN NaN NaN 0 0 Median 53510000 34066000 19444000 3662900 2404500 1258500 1651100 913570 737520 30558000 18822000 11736000 4493800 3074400 1419400 13144000 8851100 4293300 0 0 0 22427 182;1302 23395 118356;118357;118358;118359;118360;118361;118362;118363 119489;119490;119491;119492;119493;119494 119493 6 LQQQLTQAAQELAAEKEK ELKIAVLQKTELENKLQQQLTQAAQELAAE QLTQAAQELAAEKEKISVLQNNYEKSQETF K L Q E K I 4 0 0 0 0 5 3 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 18 1 2026.0695 Q15075 Q15075 996 1013 EEA1 Early endosome antigen 1 yes yes 3 5.9581E-13 137.44 By MS/MS By MS/MS 1 1 1.0384 0.99364 14.562 2 Median 0.9473 0.89642 NaN 1 0 Median 1.1382 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27563000 13312000 14252000 24739000 11976000 12763000 2824200 1335600 1488600 0 0 0 0 0 0 0 0 0 0 0 0 22428 2926 23396 118364;118365 119495;119496;119497 119496 3 LQQQLTQAQETLK QGHLKRASNESTRQRLQQQLTQAQETLKSL QRLQQQLTQAQETLKSLGALKK________ R L Q L K S 1 0 0 0 0 5 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1527.8257 E9PF19;Q9Y4P3 E9PF19 392 404 TBL2 Transducin beta-like protein 2 yes no 2 4.4454E-07 131.82 By MS/MS By matching 1 1 1.1372 1.0905 5.5516 2 Median 1.1224 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1521 1.1342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13639000 6275700 7363300 8282600 3918800 4363800 0 0 0 5356400 2356900 2999500 0 0 0 0 0 0 0 0 0 22429 917 23397 118366;118367 119498;119499 119498 2 LQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R L Q G K R 2 1 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 19 1 2011.9195 Q08J23;A0A140T9Y7 Q08J23 10 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes no 3 0.06793 8.4943 By MS/MS By matching 3 1 0.9647 0.99366 8.1292 4 Median 0.95509 0.97961 5.2561 3 0 Median 1.1044 1.1079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8125600 3833600 4292000 7027700 3347800 3679900 1097900 485850 612040 0 0 0 0 0 0 0 0 0 0 0 0 22430 2745 23398 118368;118369;118370;118371 119500 119500 1 LQQSFPGIEVTVK VFVDTVGMPETYQARLQQSFPGIEVTVKAK ARLQQSFPGIEVTVKAKADALYPVVSAASI R L Q V K A 0 0 0 0 0 2 1 1 0 1 1 1 0 1 1 1 1 0 0 2 0 0 13 0 1444.7926 O75792 O75792 153 165 RNASEH2A Ribonuclease H2 subunit A yes yes 2 0.0013404 55.401 By MS/MS By matching 1 1 0.87385 0.81745 3.9277 2 Median 0.87027 0.79506 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87745 0.84047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18742000 10019000 8723000 16291000 8695300 7595600 0 0 0 2450900 1323400 1127500 0 0 0 0 0 0 0 0 0 22431 1695 23399 118372;118373 119501 119501 1 LQQSHPLSATQIQVK ALEDKVKALCAEADRLQQSHPLSATQIQVK LQQSHPLSATQIQVKREELITNWEQIRTLA R L Q V K R 1 0 0 0 0 4 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 15 0 1676.921 A0A0D9SF54;Q13813 Q13813 321 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 4.1336E-36 215.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 6 6 2 2 0.97994 0.90761 23.2 22 Median 1.1536 1.1274 14.131 2 0 Median 1.114 0.97166 5.2068 4 1 Median 0.7741 0.83884 30.421 6 0 Median 0.95557 0.84797 19.027 6 0 Median 0.77901 0.81555 34.742 2 0 Median 1.0322 0.86686 8.6973 2 0 Median 489580000 243890000 245690000 10758000 5087300 5671100 223890000 105670000 118220000 112540000 60724000 51818000 91142000 45517000 45625000 26774000 14741000 12033000 24476000 12153000 12322000 22432 264;2838 23400 118374;118375;118376;118377;118378;118379;118380;118381;118382;118383;118384;118385;118386;118387;118388;118389;118390;118391;118392;118393;118394;118395;118396 119502;119503;119504;119505;119506;119507;119508;119509;119510;119511;119512;119513;119514;119515;119516;119517;119518;119519;119520;119521;119522;119523;119524;119525;119526;119527 119513 26 LQQTAFENAYLK TKGDSSRLLKALPLKLQQTAFENAYLKAQE PLKLQQTAFENAYLKAQEGMREMSHSAENP K L Q L K A 2 0 1 0 0 2 1 0 0 0 2 1 0 1 0 0 1 0 1 0 0 0 12 0 1424.73 Q13315;E9PIN0 Q13315 1115 1126 ATM Serine-protein kinase ATM yes no 2 0.0041736 65.933 By MS/MS 2 0.67058 0.71966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67058 0.71966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6691200 3845900 2845400 0 0 0 0 0 0 6691200 3845900 2845400 0 0 0 0 0 0 0 0 0 22433 2805 23401 118397;118398 119528;119529 119528 2 LQQTEAELR PVKVPLEVQEADEAKLQQTEAELRKVDEAI EADEAKLQQTEAELRKVDEAIALFQKML__ K L Q L R K 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1086.5669 P26640;A0A140T936 P26640 1243 1251 VARS Valine--tRNA ligase yes no 2 1.0003E-06 157.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3748 1.1344 7.7 4 Linear 1.12 1.1326 NaN 1 0 Median 1.3568 1.1362 NaN 1 0 Median 1.1992 1.3079 NaN 1 0 Median 1.2974 1.103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15460000 6708100 8751900 824380 444150 380220 9206800 3658600 5548300 1882300 1144900 737400 3546500 1460400 2086100 0 0 0 0 0 0 22434 2148 23402 118399;118400;118401;118402 119530;119531;119532;119533;119534;119535 119535 6 LQQTLNALNKK NQRIYRKLRKAELAKLQQTLNALNKKAAFY ELAKLQQTLNALNKKAAFYEEQINYYDTYI K L Q K K A 1 0 2 0 0 2 0 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 11 1 1269.7405 E7EWC2;F5H7S7;Q13576 E7EWC2 1371 1381 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 3 0.043738 15.539 By MS/MS By matching 1 1 0.95186 0.96355 36.111 2 Median 0.71594 0.74642 NaN 1 0 Median 1.2655 1.2439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995350 509880 485460 665530 401210 264320 329810 108670 221140 0 0 0 0 0 0 0 0 0 0 0 0 22435 901 23403 118403;118404 119536 119536 1 LQQTQNQVDEVVDIMR ______________________________ QQTQNQVDEVVDIMRVNVDKVLERDQKLSE R L Q M R V 0 1 1 2 0 4 1 0 0 1 1 0 1 0 0 0 1 0 0 3 0 0 16 0 1914.9469 Q15836 Q15836 15 30 VAMP3 Vesicle-associated membrane protein 3 yes yes 2;3 5.1322E-11 167.3 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1.202 1.145 13.105 9 Median 1.0438 1.0119 20.41 3 0 Median 1.2832 1.0818 5.8651 3 0 Median 1.1462 1.1612 1.2405 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5159 1.1898 NaN 1 0 Median 20709000 8993900 11715000 3111200 1420700 1690500 5789900 2560600 3229400 11652000 4956600 6695700 0 0 0 0 0 0 155790 56057 99737 22436 2974 23404;23405 118405;118406;118407;118408;118409;118410;118411;118412;118413 119537;119538;119539;119540;119541;119542;119543;119544;119545 119539 1634 9 LQQTQSLHSLR TETVQEACERELALRLQQTQSLHSLRSISA LALRLQQTQSLHSLRSISASKASPPGDLQN R L Q L R S 0 1 0 0 0 3 0 0 1 0 3 0 0 0 0 2 1 0 0 0 0 0 11 0 1309.7102 O00273 O00273 297 307 DFFA DNA fragmentation factor subunit alpha yes yes 2;3 0.00016143 81.338 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1.0872 1.0878 27.876 8 Median 1.1042 1.0965 19.145 3 0 Plateau 0.99723 0.86235 52.636 2 0 Median 1.0742 1.1434 16.636 2 0 Median 1.5293 1.3467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22999000 10759000 12240000 10480000 4999600 5480300 8437300 3708100 4729300 3340500 1767200 1573300 741630 284240 457400 0 0 0 0 0 0 22437 1454 23406 118414;118415;118416;118417;118418;118419;118420;118421 119546;119547;119548;119549;119550;119551;119552;119553;119554;119555;119556;119557 119555 12 LQQTYAALNSK NQRRYRQRRKAELVKLQQTYAALNSKATFY ELVKLQQTYAALNSKATFYGEQVDYYKSYI K L Q S K A 2 0 1 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 11 0 1235.651 P46940;H0YLE8 P46940 1506 1516 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00013748 98.048 By MS/MS By MS/MS By MS/MS 3 1 1 0.52022 0.44401 58.105 5 Median NaN NaN NaN 0 0 Median 0.99435 0.88098 40.109 3 0 Median 0.20588 0.22764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46244 0.39622 NaN 1 1 Median 31477000 19818000 11659000 0 0 0 18708000 9599300 9109000 9673200 7993000 1680200 0 0 0 0 0 0 3095700 2226100 869600 22438 2350 23407 118422;118423;118424;118425;118426 119558;119559;119560;119561;119562;119563 119559 6 LQQVLQMESHIQSTSDR CYPAVQKTTLVIMERLQQVLQMESHIQSTS QVLQMESHIQSTSDRIQFNDLQSLLCATLQ R L Q D R I 0 1 0 1 0 4 1 0 1 1 2 0 1 0 0 3 1 0 0 1 0 0 17 0 1998.9793 Q14974;J3KTM9;J3QKQ5 Q14974 558 574 KPNB1 Importin subunit beta-1 yes no 2;3 4.3551E-41 214.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 11 6 2 3 1.2501 1.1297 23.57 33 Median 1.1282 1.0849 6.6449 6 0 Median 1.3477 1.1656 11.174 5 0 Median 1.0625 1.1217 32.214 11 3 Median 1.3418 1.1563 20.967 6 0 Median 1.3311 1.3434 0.55498 2 0 Median 1.384 1.1225 22.88 3 0 Plateau 782630000 357880000 424750000 177480000 81161000 96323000 41991000 17328000 24663000 422740000 198520000 224220000 85502000 35408000 50094000 47026000 21565000 25461000 7886500 3906000 3980500 22439 2904 23408;23409 118427;118428;118429;118430;118431;118432;118433;118434;118435;118436;118437;118438;118439;118440;118441;118442;118443;118444;118445;118446;118447;118448;118449;118450;118451;118452;118453;118454;118455;118456;118457;118458;118459 119564;119565;119566;119567;119568;119569;119570;119571;119572;119573;119574;119575;119576;119577;119578;119579;119580;119581;119582;119583;119584;119585;119586;119587;119588;119589;119590;119591;119592;119593;119594;119595;119596;119597;119598;119599;119600;119601;119602;119603;119604;119605 119587 1588 42 LQQVLTGLR SLALGALPGFLLKGRLQQVLTGLRAVTHTS FLLKGRLQQVLTGLRAVTHTSPEDVSFAES R L Q L R A 0 1 0 0 0 2 0 1 0 0 3 0 0 0 0 0 1 0 0 1 0 0 9 0 1026.6186 Q9BTW9;J3KR97;I3L439;A0A0J9YVR1;A0A0J9YWI5;I3L163;A0A0J9YVU1;A0A0J9YYG2 Q9BTW9 791 799 TBCD Tubulin-specific chaperone D yes no 2 0.0056277 57.047 By matching By MS/MS 1 2 1.4611 1.2255 11.082 3 Median 1.0767 1.0408 NaN 1 0 Median 1.4862 1.2553 3.3905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16819000 6493900 10325000 5988000 2770900 3217200 10831000 3723100 7107700 0 0 0 0 0 0 0 0 0 0 0 0 22440 1324 23410 118460;118461;118462 119606;119607 119606 2 LQQVMQAK RYNVPNSAIYKRVLKLQQVMQAKKKELARR IYKRVLKLQQVMQAKKKELARRDDIEDGDS K L Q A K K 1 0 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 944.51134 Q86U86;E7EVG2;H0Y5B5 Q86U86 476 483 PBRM1 Protein polybromo-1 yes no 2 0.044676 35.88 By MS/MS By matching 1 1 1.0964 1.0948 12.884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90086 0.99946 NaN 1 0 Median 1.3345 1.1992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1623600 812750 810850 0 0 0 0 0 0 1367000 712010 654970 256610 100740 155870 0 0 0 0 0 0 22441 3273 23411 118463;118464 119608 119608 1 LQQVNGLGQGLIQSAGK FKMFQKEQVDPLQMKLQQVNGLGQGLIQSA QVNGLGQGLIQSAGKDCDVQGLEHDMEEIN K L Q G K D 1 0 1 0 0 4 0 4 0 1 3 1 0 0 0 1 0 0 0 1 0 0 17 0 1709.9424 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;A0A0A6YYJ5 H3BPE1 5286 5302 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00019766 47.712 By matching By matching By MS/MS 1 1 1 1.1008 1.0969 4.4939 3 Plateau 1.1008 1.0969 NaN 1 0 Median 1.1614 1.0134 NaN 1 0 Median 1.0063 1.0938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11813000 5353500 6459600 6005700 2681600 3324000 2875500 1319200 1556300 2932000 1352700 1579200 0 0 0 0 0 0 0 0 0 22442 1220 23412 118465;118466;118467 119609 119609 1 LQQYYIFIPSK PVKCAVSSKYQTVEKLQQYYIFIPSKFKDT TVEKLQQYYIFIPSKFKDTYLVYILNELAG K L Q S K F 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 1 0 0 2 0 0 0 11 0 1398.7547 Q9H0S4;F5H1N9 Q9H0S4 238 248 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.018998 48.423 By MS/MS By matching By MS/MS 1 1 1 0.97652 0.94876 7.9278 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0478 1.0097 NaN 1 1 Median 0.97652 0.87141 NaN 1 0 Median 0.93615 0.89151 NaN 1 0 Median NaN NaN NaN 0 0 Median 20945000 10077000 10868000 0 0 0 0 0 0 15590000 7557000 8033200 484820 236950 247870 4870200 2283200 2586900 0 0 0 22443 3928 23413 118468;118469;118470 119610;119611;119612 119612 3 LQRPLTPGSSDSLTASANYSK AYSEVSQDGKSLLDKLQRPLTPGSSDSLTA PGSSDSLTASANYSKAVHHVLDVIHEVLHH K L Q S K A 2 1 1 1 0 1 0 1 0 0 3 1 0 0 2 5 2 0 1 0 0 0 21 1 2192.1073 E7EWP2;O75962;F5H228;E7EPJ7 E7EWP2 453 473 TRIO Triple functional domain protein yes no 3 0.065481 24.78 By matching By MS/MS By matching 1 1 1 0.54761 0.52866 20.528 3 Median 0.45906 0.4629 NaN 1 0 Median 0.7433 0.69253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54761 0.52866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11981000 5841200 6140100 6015400 2541700 3473700 5117400 2812900 2304400 0 0 0 848490 486590 361900 0 0 0 0 0 0 22444 903 23414 118471;118472;118473 119613 119613 0 LQSAMTEGGVVLR YQPTPWEAASDSMKRLQSAMTEGGVVLREP KRLQSAMTEGGVVLREPQRIYE________ R L Q L R E 1 1 0 0 0 1 1 2 0 0 2 0 1 0 0 1 1 0 0 2 0 0 13 0 1359.718 Q9H0U6 Q9H0U6 161 173 MRPL18 39S ribosomal protein L18, mitochondrial yes yes 2 0.00049996 72.006 By MS/MS By MS/MS 1 1 1.4776 1.318 7.9858 2 Median NaN NaN NaN 0 0 Median 1.6797 1.3945 NaN 1 0 Median 1.2998 1.2456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7087800 2973600 4114200 0 0 0 2012000 694590 1317400 5075800 2279000 2796800 0 0 0 0 0 0 0 0 0 22445 3930 23415 118474;118475 119614;119615 119614 2 LQSAMTEGGVVLREPQR YQPTPWEAASDSMKRLQSAMTEGGVVLREP SAMTEGGVVLREPQRIYE____________ R L Q Q R I 1 2 0 0 0 2 2 2 0 0 2 0 1 0 1 1 1 0 0 2 0 0 17 1 1869.9731 Q9H0U6 Q9H0U6 161 177 MRPL18 39S ribosomal protein L18, mitochondrial yes yes 3 9.1451E-06 64.52 By MS/MS By MS/MS By matching 1 1 1 0.93772 0.98289 85.683 3 Plateau 0.93772 0.98289 NaN 1 0 Median 0.22254 0.20358 NaN 1 1 Median 0.77517 0.80373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100020000 75448000 24571000 26132000 11459000 14673000 67023000 60387000 6635600 6863500 3601300 3262200 0 0 0 0 0 0 0 0 0 22446 3930 23416 118476;118477;118478 119616;119617 119617 2 LQSDDILPLGK NHYPVESSWIAPELRLQSDDILPLGKDSGP PELRLQSDDILPLGKDSGPLSDPITGKPYV R L Q G K D 0 0 0 2 0 1 0 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1197.6605 H7BXY3;Q7L2E3 H7BXY3 350 360 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.016514 36.334 By MS/MS 1 1.2649 1.36 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2649 1.36 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6927300 2962100 3965200 0 0 0 0 0 0 6927300 2962100 3965200 0 0 0 0 0 0 0 0 0 22447 1244 23417 118479 119618 119618 1 LQSEPESIRK NGPTDSYAAISQVDRLQSEPESIRKWREEQ SQVDRLQSEPESIRKWREEQMERLEALDAN R L Q R K W 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 0 0 0 0 10 1 1185.6354 F8WF69;P09496 F8WF69 103 112 CLTA Clathrin light chain A yes no 2 0.056934 31.074 By MS/MS By matching By matching By matching 1 1 1 1 0.84453 0.88303 30.653 4 Median 1.0645 1.0508 NaN 1 0 Median 1.2398 1.1479 NaN 1 0 Median 0.66999 0.74204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55484 0.59412 NaN 1 0 Median NaN NaN NaN 0 0 Median 2744400 1368800 1375500 1058200 472760 585450 583100 263510 319590 535780 302970 232810 0 0 0 567280 329580 237690 0 0 0 22448 1098 23418 118480;118481;118482;118483 119619 119619 1 LQSEVAELK GLAESVSTLIWAAPRLQSEVAELKIVADQL IWAAPRLQSEVAELKIVADQLCAKYSKEYG R L Q L K I 1 0 0 0 0 1 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1015.555 P53990;H3BMU1;H3BUI0;H3BQF7;J3KR23;F5GXM3 P53990 110 118 IST1 IST1 homolog yes no 2 0.00061082 109.71 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 1 0.9428 0.90434 13.437 7 Median 0.79627 0.76114 NaN 1 0 Median 1.0419 0.90434 NaN 1 0 Median 0.92798 0.93544 7.4691 2 0 Median 1.0677 0.93241 22.032 2 0 Median NaN NaN NaN 0 0 Median 1.2642 1.0486 NaN 1 0 Median 57168000 26501000 30666000 3175900 1482600 1693300 1394700 600600 794150 21673000 10457000 11215000 28116000 12870000 15247000 0 0 0 2807600 1091000 1716600 22449 2477 23419 118484;118485;118486;118487;118488;118489;118490 119620;119621;119622;119623;119624 119624 5 LQSGVNTLQGFK EPGYCPVRLGMTTGRLQSGVNTLQGFKEDK TGRLQSGVNTLQGFKEDKRNKVTPVLYLNY R L Q F K E 0 0 1 0 0 2 0 2 0 0 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1290.6932 Q9NPI1 Q9NPI1 378 389 BRD7 Bromodomain-containing protein 7 yes yes 2 0.00085134 60.102 By MS/MS 2 1.1349 1.1912 29.769 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1349 1.1912 29.769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25237000 10529000 14707000 0 0 0 0 0 0 25237000 10529000 14707000 0 0 0 0 0 0 0 0 0 22450 4053 23420 118491;118492 119625 119625 1 LQSIGTENTEENR GILAADESTGSIAKRLQSIGTENTEENRRF KRLQSIGTENTEENRRFYRQLLLTADDRVN R L Q N R R 0 1 2 0 0 1 3 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 13 0 1489.7009 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8 J3KPS3 44 56 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 4.7933E-07 110.84 By MS/MS By MS/MS By MS/MS 1 1 1 1.3207 1.3681 23.803 3 Median 1.3655 1.3681 NaN 1 0 Median 1.0671 0.93067 NaN 1 0 Median 1.3207 1.4376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17487000 8084700 9402200 2616100 1112800 1503300 12753000 6120000 6633200 2117600 851870 1265700 0 0 0 0 0 0 0 0 0 22451 1310 23421 118493;118494;118495 119626;119627;119628;119629;119630 119630 5 LQSIGTENTEENRR GILAADESTGSIAKRLQSIGTENTEENRRF RLQSIGTENTEENRRFYRQLLLTADDRVNP R L Q R R F 0 2 2 0 0 1 3 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 14 1 1645.802 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8 J3KPS3 44 57 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 1.5055E-05 125.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 3 2 1 1.1657 1.1265 21.784 16 Median 1.1731 1.2301 17.615 5 0 Median 1.1441 1.0685 27.939 5 0 Median 1.2104 1.2406 13.862 3 0 Median 1.1063 0.97381 6.9936 2 0 Median 1.2184 1.3005 NaN 1 0 Median NaN NaN NaN 0 0 Median 218300000 95639000 122660000 51251000 22128000 29123000 138150000 60365000 77788000 21955000 9882500 12072000 4985500 2348400 2637100 1958500 915230 1043300 0 0 0 22452 1310 23422 118496;118497;118498;118499;118500;118501;118502;118503;118504;118505;118506;118507;118508;118509;118510;118511 119631;119632;119633;119634;119635;119636;119637;119638;119639;119640;119641;119642;119643 119640 13 LQSLEKDSQALSLTK DVSELLKDKTHLQEKLQSLEKDSQALSLTK LQSLEKDSQALSLTKCELENQIAQLNKEKE K L Q T K C 1 0 0 1 0 2 1 0 0 0 4 2 0 0 0 3 1 0 0 0 0 0 15 1 1659.9043 P49454 P49454 2037 2051 CENPF Centromere protein F yes yes 3 0.036438 25.957 By MS/MS 1 0.69349 0.78715 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69349 0.78715 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6057500 3455300 2602300 0 0 0 0 0 0 6057500 3455300 2602300 0 0 0 0 0 0 0 0 0 22453 2383 23423 118512 119644 119644 1 LQSLGVPGAAASR QDVRLYPEVPEVLKRLQSLGVPGAAASRTS KRLQSLGVPGAAASRTSEIEGANQLLELFD R L Q S R T 3 1 0 0 0 1 0 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 13 0 1225.6779 E9PL57;Q86V88 E9PL57 75 87 NEDD8-MDP1;MDP1 Magnesium-dependent phosphatase 1 yes no 2 0.00031274 77.379 By MS/MS By MS/MS By matching 1 1 1 0.92152 0.90374 12.507 3 Plateau 0.92152 0.90374 NaN 1 0 Median 0.91296 0.75766 NaN 1 0 Median 0.87782 0.96492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11191000 5356000 5834900 6957400 3191800 3765600 2667300 1500700 1166600 1566200 663470 902680 0 0 0 0 0 0 0 0 0 22454 956 23424 118513;118514;118515 119645;119646 119645 2 LQSLQSELQFK KTQALSDKEKEFSKKLQSLQSELQFKDAEM FSKKLQSLQSELQFKDAEMNELRTKLQTSE K L Q F K D 0 0 0 0 0 3 1 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 11 0 1319.7085 Q8WXE1;A0A0U1RQR9;A0A0U1RRM7;A0A0U1RQW3 Q8WXE1 185 195 ATRIP ATR-interacting protein yes no 2 0.0096923 38.776 By MS/MS By matching By matching 1 1 1 0.95494 0.85162 12.86 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0256 0.99195 NaN 1 0 Median 0.95494 0.85162 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93734 0.76822 NaN 1 0 Median 12839000 6413500 6425900 0 0 0 0 0 0 11911000 5955600 5955300 381420 194920 186500 0 0 0 547030 262930 284100 22455 3518 23425 118516;118517;118518 119647;119648 119647 2 LQSLTENLTK DKSRSLNESKIEIERLQSLTENLTKEHLML IEIERLQSLTENLTKEHLMLEEELRNLRLE R L Q T K E 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 P15924 P15924 1706 1715 DSP Desmoplakin yes yes 2 0.00037716 103.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.3592 1.3596 28.701 7 Median 1.3592 1.3596 NaN 1 1 Median 1.7966 1.6001 NaN 1 1 Median 1.4077 1.5299 10.754 2 2 Median 0.83424 0.81455 NaN 1 0 Median 0.81273 0.85106 NaN 1 0 Median 1.3602 1.1648 NaN 1 0 Median 84880000 35678000 49202000 8230700 3721800 4508900 19777000 6298300 13479000 24114000 9310400 14804000 4315300 2257700 2057600 15025000 8370000 6655400 13417000 5720000 7696800 22456 2021 23426 118519;118520;118521;118522;118523;118524;118525 119649;119650;119651;119652;119653;119654;119655;119656;119657 119656 9 LQSPIKEENTTAVEEIGR ALEQHILYLQPFLAKLQSPIKEENTTAVEE PIKEENTTAVEEIGRTEMGNKNEVNDKFSI K L Q G R T 1 1 1 0 0 1 4 1 0 2 1 1 0 0 1 1 2 0 0 1 0 0 18 1 2013.0378 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9;S4R3Y0 Q9NS73 89 106 MBIP MAP3K12-binding inhibitory protein 1 yes no 3 1.7734E-14 120.24 By MS/MS By MS/MS 1 1 0.90573 0.90485 5.5634 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82565 0.94115 NaN 1 0 Median 0.99358 0.86994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21607000 9222800 12384000 0 0 0 0 0 0 19806000 8287100 11519000 1801100 935690 865380 0 0 0 0 0 0 22457 4097 23427 118526;118527 119658;119659;119660 119659 3 LQSQLLSLEK LTNHIRESLPALRSKLQSQLLSLEKEVEEY ALRSKLQSQLLSLEKEVEEYKNFRPDDPTR K L Q E K E 0 0 0 0 0 2 1 0 0 0 4 1 0 0 0 2 0 0 0 0 0 0 10 0 1157.6656 P50570 P50570 300 309 DNM2 Dynamin-2 no no 2 0.00037664 80.755 By MS/MS By MS/MS 1 1 1.0217 0.98405 9.5914 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97066 1.0531 NaN 1 0 Median 1.0753 0.91953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21204000 9935800 11268000 0 0 0 0 0 0 18522000 8683900 9838100 2681600 1251900 1429700 0 0 0 0 0 0 22458 2417 23428 118528;118529 119661;119662;119663;119664 119661 4 LQSQLQENEEFQK SQQAKNCPISAKLERLQSQLQENEEFQKSL ERLQSQLQENEEFQKSLNQHSGSYEVIVAE R L Q Q K S 0 0 1 0 0 4 3 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1619.7791 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4829 4841 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 5.8811E-10 172.56 By MS/MS By MS/MS By matching 1 1 1 0.83571 0.89526 23.974 3 Median 0.70883 0.71145 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83571 0.89526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3383 1.149 NaN 1 0 Median 40257000 23458000 16799000 31323000 18818000 12505000 0 0 0 8074800 4280600 3794200 0 0 0 0 0 0 859320 359250 500060 22459 1220 23429 118530;118531;118532 119665;119666;119667;119668 119666 4 LQSQVLQAMR RIEIVVVGTGDRTERLQSQVLQAMRQRGIA DRTERLQSQVLQAMRQRGIAVEVQDTPNAC R L Q M R Q 1 1 0 0 0 3 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1172.6336 Q9BU61 Q9BU61 126 135 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 yes yes 2 3.4806E-07 131.06 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.4696 1.2969 66.896 7 Median 1.057 1.0147 1.0145 2 2 Median 1.6493 1.3884 5.7821 2 0 Median 1.4696 1.4886 NaN 1 0 Median 1.6453 1.2969 NaN 1 0 Median 0.21981 0.22362 NaN 1 0 Median NaN NaN NaN 0 0 Median 113120000 47197000 65918000 44478000 18821000 25656000 56393000 21562000 34830000 3435100 1489900 1945200 1451500 583050 868480 7358400 4740300 2618100 0 0 0 22460 3834 23430 118533;118534;118535;118536;118537;118538;118539 119669;119670;119671;119672;119673 119669 5 LQSQYASSEATISQLR ERERESEKLKDECKKLQSQYASSEATISQL QSQYASSEATISQLRSELAKGPQEVAVYVQ K L Q L R S 2 1 0 0 0 3 1 0 0 1 2 0 0 0 0 4 1 0 1 0 0 0 16 0 1780.8955 Q15075 Q15075 258 273 EEA1 Early endosome antigen 1 yes yes 2 5.2981E-10 122.39 By MS/MS By MS/MS 1 1 1.092 0.97492 2.0414 2 Median 1.0539 0.98909 NaN 1 0 Median 1.1314 0.96095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21667000 10646000 11021000 18411000 9128400 9282600 3255900 1517800 1738100 0 0 0 0 0 0 0 0 0 0 0 0 22461 2926 23431 118540;118541 119674;119675;119676;119677 119675 4 LQSRPAAPPAPGPGQLTLR RCLVLTGFGGYDKVKLQSRPAAPPAPGPGQ PAAPPAPGPGQLTLRLRACGLNFADLMARQ K L Q L R L 3 2 0 0 0 2 0 2 0 0 3 0 0 0 5 1 1 0 0 0 0 0 19 1 1926.0799 Q99536;K7ERT7 Q99536 64 82 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 3 1.5065E-10 84.975 By MS/MS 3 0.53425 0.53951 5.008 3 Median 0.53425 0.53951 5.008 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71368000 48285000 23082000 71368000 48285000 23082000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22462 3750 23432 118542;118543;118544 119678;119679;119680;119681 119678 4 LQSSEAEVR KAQEQQQQMAELHSKLQSSEAEVRSKCEEL AELHSKLQSSEAEVRSKCEELSGLHGQLQE K L Q V R S 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1017.5091 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 922 930 RRBP1 Ribosome-binding protein 1 yes no 2 0.0054678 71.379 By MS/MS 1 1.4975 1.2811 NaN 1 Median NaN NaN NaN 0 0 Median 1.4975 1.2811 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2277200 866190 1411000 0 0 0 2277200 866190 1411000 0 0 0 0 0 0 0 0 0 0 0 0 22463 4222 23433 118545 119682 119682 1 LQSSNIFTVAK QIRDCPLNAEAASSKLQSSNIFTVAKRNVE ASSKLQSSNIFTVAKRNVEGQDMLYQSLKL K L Q A K R 1 0 1 0 0 1 0 0 0 1 1 1 0 1 0 2 1 0 0 1 0 0 11 0 1206.6608 Q10567 Q10567 877 887 AP1B1 AP-1 complex subunit beta-1 yes yes 2 0.0020633 55.567 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 2 1 0.98796 1.0149 21.6 5 Median 0.98044 0.9441 NaN 1 0 Median 1.2251 1.0149 NaN 1 0 Median 0.98796 1.0746 NaN 1 0 Median 1.6109 1.3506 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89207 0.74356 NaN 1 0 Median 42240000 20882000 21358000 24078000 12158000 11920000 1480800 638930 841850 14672000 7182200 7489900 1242200 488020 754150 0 0 0 766720 414590 352130 22464 2752 23434 118546;118547;118548;118549;118550;118551 119683;119684;119685 119684 3 LQSSQEPEAPPPR SPKARRGKARRRAAKLQSSQEPEAPPPRDV AKLQSSQEPEAPPPRDVALLQGRANDLVKY K L Q P R D 1 1 0 0 0 2 2 0 0 0 1 0 0 0 4 2 0 0 0 0 0 0 13 0 1434.7103 Q9UNF1;Q5H909;Q5H907 Q9UNF1 262 274 MAGED2 Melanoma-associated antigen D2 yes no 2 0.00034487 76.228 By MS/MS By matching 1 1 0.86206 0.75789 43.864 2 Median NaN NaN NaN 0 0 Median 0.64263 0.55578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1564 1.0335 NaN 1 0 Median 2872000 1439300 1432700 0 0 0 1936100 1042500 893580 0 0 0 0 0 0 0 0 0 935900 396820 539080 22465 4343 23435 118552;118553 119686;119687 119686 2 LQSTFVFEEIGR PTSGTSAKTPSEGGKLQSTFVFEEIGRRLK GGKLQSTFVFEEIGRRLKDIGPEVVKKVNA K L Q G R R 0 1 0 0 0 1 2 1 0 1 1 0 0 2 0 1 1 0 0 1 0 0 12 0 1424.73 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 622 633 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.00089741 59.542 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.88894 0.82087 38.58 4 Median NaN NaN NaN 0 0 Median 1.2036 1.044 NaN 1 0 Median 0.65652 0.6454 NaN 1 1 Median 0.55044 0.48344 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3159 1.0664 NaN 1 0 Median 18441000 11068000 7373700 0 0 0 2557600 1083100 1474500 15069000 9602500 5466500 97604 67840 29765 0 0 0 717140 314210 402930 22466 393 23436 118554;118555;118556;118557;118558 119688;119689;119690 119690 3 LQSWLYSSR KFYDDPRSNDGNSYRLQSWLYSSRLLQYSD DGNSYRLQSWLYSSRLLQYSDALEHLLTTG R L Q S R L 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 3 0 1 1 0 0 0 9 0 1138.5771 A0A087WXC5;E7ESZ7;O95299;Q8N1B9;C9J6X0 A0A087WXC5 131 139 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 2 0.0054075 71.692 By MS/MS 2 0.95179 0.94526 16.096 2 Median 0.95179 0.94526 16.096 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15070000 7993800 7076200 15070000 7993800 7076200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22467 66 23437 118559;118560 119691;119692 119692 2 LQTASDESYKDPTNIQLSK FSRDVDEIEAWISEKLQTASDESYKDPTNI SDESYKDPTNIQLSKLLSKHQKHQAFEAEL K L Q S K L 1 0 1 2 0 2 1 0 0 1 2 2 0 0 1 3 2 0 1 0 0 0 19 1 2137.0539 A0A0D9SF54 A0A0D9SF54 1551 1569 SPTAN1 no no 3 3.5836E-08 63.998 By MS/MS By matching 1 1 0.62367 0.65057 47.714 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40044 0.46427 NaN 1 0 Median 0.97134 0.91163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20417000 14147000 6270400 0 0 0 0 0 0 17958000 12956000 5002300 2459100 1191000 1268100 0 0 0 0 0 0 22468 264 23438 118561;118562 119693 119693 1 LQTASDESYKDPTNIQSK FSRDVDEIEAWISEKLQTASDESYKDPTNI ASDESYKDPTNIQSKHQKHQAFEAELHANA K L Q S K H 1 0 1 2 0 2 1 0 0 1 1 2 0 0 1 3 2 0 1 0 0 0 18 1 2023.9698 Q13813 Q13813 1571 1588 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 6.1489E-15 120.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 1 2 0.90266 0.9043 14.079 15 Median 0.88092 0.89839 2.3669 2 0 Median 1.0112 0.96993 14.671 3 0 Median 0.79845 0.9263 26.978 4 1 Median 0.90266 0.88302 2.5693 3 0 Median 0.85156 0.92487 NaN 1 0 Median 0.93882 0.84223 5.9005 2 0 Median 321060000 166570000 154480000 23116000 11725000 11391000 72677000 35250000 37427000 130440000 70106000 60338000 55449000 28759000 26689000 23010000 12365000 10645000 16360000 8367800 7992300 22469 2838 23439 118563;118564;118565;118566;118567;118568;118569;118570;118571;118572;118573;118574;118575;118576;118577 119694;119695;119696;119697;119698;119699;119700;119701;119702;119703;119704;119705;119706;119707;119708;119709;119710;119711;119712;119713;119714;119715;119716;119717 119697 24 LQTDISELENR LLRQLFAQAEKWYLKLQTDISELENRELLE WYLKLQTDISELENRELLEQVAEFEKAEIT K L Q N R E 0 1 1 1 0 1 2 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 11 0 1316.6572 Q9NQ48;H7C488 Q9NQ48 98 108 LZTFL1 Leucine zipper transcription factor-like protein 1 yes no 2 0.017604 35.944 By MS/MS 1 1.075 0.9015 NaN 1 Median NaN NaN NaN 0 0 Median 1.075 0.9015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2698200 1278500 1419700 0 0 0 2698200 1278500 1419700 0 0 0 0 0 0 0 0 0 0 0 0 22470 4059 23440 118578 119718 119718 1 LQTFLSK AKKENTAAENGLTVRLQTFLSKRPMPLSAR AENGLTVRLQTFLSKRPMPLSARGNSRLNI R L Q S K R 0 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 7 0 835.48035 Q12789;H3BU55 Q12789 1156 1162 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.013611 76.035 By MS/MS 1 1.0358 1.1533 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0358 1.1533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5785300 2501500 3283800 0 0 0 0 0 0 5785300 2501500 3283800 0 0 0 0 0 0 0 0 0 22471 2758 23441 118579 119719 119719 1 LQTLPVSR VIYFTKLLGSPESTKLQTLPVSRITDLLPN GSPESTKLQTLPVSRITDLLPNITRNGAFI K L Q S R I 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 8 0 912.53927 B5MDE0;Q96AA3 B5MDE0 174 181 RFT1 Protein RFT1 homolog yes no 2 0.0043154 82.279 By MS/MS By matching By matching 2 1 1 1.2354 1.1707 17.538 4 Median NaN NaN NaN 0 0 Median 1.4541 1.2637 25.76 2 0 Median 1.2201 1.294 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0247 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median 10714000 4814300 5899900 0 0 0 6016600 2537600 3479000 1926400 894020 1032400 0 0 0 2771200 1382700 1388500 0 0 0 22472 622 23442 118580;118581;118582;118583 119720 119720 1 LQTLVSEQPNKDVVEQMEK ILNDQNKALKSEVQKLQTLVSEQPNKDVVE VSEQPNKDVVEQMEKCIQEKDEKLKTVEEL K L Q E K C 0 0 1 1 0 3 3 0 0 0 2 2 1 0 1 1 1 0 0 3 0 0 19 1 2214.1202 Q86UP2 Q86UP2 717 735 KTN1 Kinectin yes yes 3 6.4177E-10 87.85 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.90501 0.89893 8.1909 5 Median 0.9134 0.9078 15.617 2 0 Median 0.98344 0.91932 NaN 1 0 Median 0.77552 0.89893 NaN 1 0 Median 0.90501 0.86208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57721000 26499000 31222000 39103000 16606000 22497000 2328400 1139100 1189300 13800000 7506900 6293000 2490400 1247300 1243100 0 0 0 0 0 0 22473 3280 23443 118584;118585;118586;118587;118588 119721;119722;119723;119724;119725;119726;119727 119722 7 LQTMKEELDFQK QLQDEMLRRVDAENRLQTMKEELDFQKNIY ENRLQTMKEELDFQKNIYSEELRETKRRHE R L Q Q K N 0 0 0 1 0 2 2 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 12 1 1508.7545 P02545;H0YAB0;Q3BDU5 P02545 197 208 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 2.3283E-65 248.09 By MS/MS By MS/MS By MS/MS By MS/MS 9 12 14 10 1.161 1.1814 65.121 45 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1507 1.2198 14.78 9 1 Median 1.4661 1.3537 40.964 12 0 Median 1.0448 1.112 10.454 14 1 Median 1.3148 1.1779 126.38 10 0 Median 1198300000 548990000 649290000 0 0 0 0 0 0 335600000 150910000 184700000 149900000 54842000 95055000 616040000 294960000 321070000 96745000 48282000 48464000 22474 1834;3010 23444;23445 118589;118590;118591;118592;118593;118594;118595;118596;118597;118598;118599;118600;118601;118602;118603;118604;118605;118606;118607;118608;118609;118610;118611;118612;118613;118614;118615;118616;118617;118618;118619;118620;118621;118622;118623;118624;118625;118626;118627;118628;118629;118630;118631;118632;118633 119728;119729;119730;119731;119732;119733;119734;119735;119736;119737;119738;119739;119740;119741;119742;119743;119744;119745;119746;119747;119748;119749;119750;119751;119752;119753;119754;119755;119756;119757;119758;119759;119760;119761;119762;119763;119764;119765;119766;119767;119768;119769;119770;119771;119772;119773;119774;119775;119776;119777;119778;119779;119780 119775 596 53 LQTNRDGAASLSYR IEAEQILMSPNSYIKLQTNRDGAASLSYRV KLQTNRDGAASLSYRVLDGPEKVPVVHVDE K L Q Y R V 2 2 1 1 0 1 0 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 14 1 1550.7801 Q8TEM1 Q8TEM1 1308 1321 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.024219 31.827 By MS/MS 1 0.10014 0.11006 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10014 0.11006 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5857000 4622700 1234400 0 0 0 0 0 0 5857000 4622700 1234400 0 0 0 0 0 0 0 0 0 22475 3477 23446 118634 119781 119781 1 LQTPNTFPK EAAKEAETPQAKKIKLQTPNTFPKRKKGEK QAKKIKLQTPNTFPKRKKGEKRASSPFRRV K L Q P K R 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 0 0 9 0 1044.5604 A0A0A0MRM9;Q14978 A0A0A0MRM9 614 622 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0024827 71.692 By MS/MS By MS/MS By MS/MS 1 1 1 0.74542 0.81269 23.351 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74542 0.81269 NaN 1 0 Median 1.1147 0.9074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70244 0.57966 NaN 1 0 Median 15175000 8311500 6863700 0 0 0 0 0 0 11886000 6513600 5372600 1319700 666830 652900 0 0 0 1969400 1131100 838250 22476 165 23447 118635;118636;118637 119782;119783;119784;119785 119782 4 LQTQASATVAIPK KLDAVMKARKDIVARLQTQASATVAIPKEH ARLQTQASATVAIPKEHHRFVIGKNGEKLQ R L Q P K E 3 0 0 0 0 2 0 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1326.7507 Q00341;A0A024R4E5;H0Y394;H7C0A4;C9JIZ1;C9J5E5;C9JZI8 Q00341 147 159 HDLBP Vigilin yes no 2 0.00043641 73.499 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 2 1.0449 0.97705 15.233 10 Median 1.0265 1.0133 12.474 4 0 Median 0.98832 0.8622 12.593 2 0 Median 1.082 1.1554 NaN 1 0 Median 1.0654 0.95872 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0203 0.86409 20.492 2 0 Median 106660000 54788000 51873000 73162000 37836000 35326000 12439000 6715000 5723600 12639000 6266500 6372400 7070700 3344100 3726600 0 0 0 1350500 626020 724460 22477 4 23448 118638;118639;118640;118641;118642;118643;118644;118645;118646;118647 119786;119787;119788;119789;119790;119791;119792;119793;119794 119787 9 LQTQEKPNTTVQVPAFLQELVDR KGTHCSRNAYMLVYRLQTQEKPNTTVQVPA TTVQVPAFLQELVDRDNSKFEEWCIEMAEM R L Q D R D 1 1 1 1 0 4 2 0 0 0 3 1 0 1 2 0 3 0 0 3 0 0 23 1 2653.4075 Q86UV5;E9PJH5;E9PJ93 Q86UV5 420 442 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 3 5.8652E-16 66.871 By MS/MS 2 0.41828 0.47872 68.562 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41828 0.47872 68.562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7707300 4511300 3196100 0 0 0 0 0 0 7707300 4511300 3196100 0 0 0 0 0 0 0 0 0 22478 3281 23449 118648;118649 119795;119796 119795 2 LQTQGLGTALK IMDCVGCFKCRLWGKLQTQGLGTALKILFS LWGKLQTQGLGTALKILFSEKLIANMPESG K L Q L K I 1 0 0 0 0 2 0 2 0 0 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1128.6503 Q96HE7;G3V2H0;Q5TAE8;Q86YB8 Q96HE7 403 413 ERO1L;ERO1LB ERO1-like protein alpha;ERO1-like protein beta yes no 2 0.00021139 98.044 By MS/MS By MS/MS 3 1 1.1245 1.0331 5.7299 4 Median 1.1048 1.0235 6.9091 3 0 Median 1.2313 1.0427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33836000 15591000 18246000 18343000 8754200 9588900 15493000 6836400 8656900 0 0 0 0 0 0 0 0 0 0 0 0 22479 3666 23450 118650;118651;118652;118653 119797;119798;119799 119799 3 LQTQVELQAR LEEAASRAAEEEKKRLQTQVELQARFSTEL EEKKRLQTQVELQARFSTELEREKLIRQQM R L Q A R F 1 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 Q9UH65;E7EMB1 Q9UH65 377 386 SWAP70 Switch-associated protein 70 yes no 2 2.6585E-10 172.21 By MS/MS By MS/MS By MS/MS 1 1 1 1.11 1.0195 7.6382 3 Plateau 1.11 1.0462 NaN 1 0 Median 1.1281 0.97461 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0719 0.89807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59175000 27522000 31654000 30125000 14235000 15890000 24192000 10974000 13218000 0 0 0 4857800 2311800 2546000 0 0 0 0 0 0 22480 4270 23451 118654;118655;118656 119800;119801;119802;119803;119804;119805 119801 6 LQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH IEDFLERRLQTQVFKLGLAKSIHHARVLIR R L Q F K L 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 P46781;B5MCT8;C9JM19 P46781 110 116 RPS9 40S ribosomal protein S9 yes no 2 0.0054124 97.068 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.316 1.2373 6.7809 5 Median 1.2026 1.1121 NaN 1 0 Median 1.3276 1.1118 NaN 1 0 Median 1.316 1.2373 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2562 1.2814 NaN 1 0 Median 1.5085 1.2486 NaN 1 0 Median 72810000 32247000 40563000 36066000 16742000 19324000 9389100 4007600 5381500 7375100 3065700 4309400 0 0 0 15809000 6774700 9034200 4170900 1656900 2514000 22481 2345 23452 118657;118658;118659;118660;118661 119806;119807;119808;119809;119810;119811;119812;119813;119814 119813 9 LQTSSVLVSGLR YSRQLYVLGHEAMKRLQTSSVLVSGLRGLG MKRLQTSSVLVSGLRGLGVEIAKNIILGGV R L Q L R G 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 2 0 0 12 0 1258.7245 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 70 81 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 5.4737E-06 132.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 9 5 2 1 2 1 1.2944 1.1787 56.309 20 Median 1.0718 1.0164 76.678 9 2 Median 1.4538 1.1816 19.226 5 1 Median 1.0935 1.1809 7.1256 2 0 Median 1.4192 1.2045 NaN 1 0 Median 1.7177 1.7371 14.524 2 0 Median 1.6413 1.3576 NaN 1 0 Median 613610000 286110000 327500000 384970000 190930000 194040000 189080000 76070000 113010000 31611000 16050000 15561000 5978300 2433100 3545200 1595100 485230 1109900 373040 138650 234390 22482 2100 23453 118662;118663;118664;118665;118666;118667;118668;118669;118670;118671;118672;118673;118674;118675;118676;118677;118678;118679;118680;118681 119815;119816;119817;119818;119819;119820;119821;119822;119823;119824;119825;119826;119827;119828;119829;119830;119831;119832;119833;119834;119835;119836;119837;119838 119828 24 LQTTDNLLPMSPEEFDEVSR IKTELISVSEVHPSRLQTTDNLLPMSPEEF NLLPMSPEEFDEVSRIVGSVEFDSMMNTV_ R L Q S R I 0 1 1 2 0 1 3 0 0 0 3 0 1 1 2 2 2 0 0 1 0 0 20 0 2320.0893 P42224;H7BZ88 P42224 717 736 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 3 0.02225 14.614 By MS/MS 1 1.0467 1.0439 NaN 1 Median 1.0467 1.0439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 719050 364480 354570 719050 364480 354570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22483 2308 23454 118682 119839 119839 1 LQTVLEK NVAEVTQSEIAQKQKLQTVLEKINETLKLP SEIAQKQKLQTVLEKINETLKLPPRSIKWN K L Q E K I 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 Q9NVD7;E9PS97 Q9NVD7 157 163 PARVA Alpha-parvin yes no 2 0.061678 37.159 By MS/MS 1 1.4025 1.566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4025 1.566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1671100 691990 979150 0 0 0 0 0 0 1671100 691990 979150 0 0 0 0 0 0 0 0 0 22484 4127 23455 118683 119840 119840 1 LQVAGEITTGPR SQVIFTNPLEIVKIRLQVAGEITTGPRVSA KIRLQVAGEITTGPRVSALSVVRDLGFFGI R L Q P R V 1 1 0 0 0 1 1 2 0 1 1 0 0 0 1 0 2 0 0 1 0 0 12 0 1240.6776 O75746;Q9UJS0 Q9UJS0 456 467 SLC25A12;SLC25A13 Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2 no no 2 1.281E-17 132.78 By MS/MS By MS/MS 2 1 0.99392 0.89574 48.907 2 Median 0.67404 0.63386 NaN 1 1 Median 1.4656 1.2658 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70300000 32790000 37510000 40842000 23504000 17338000 29457000 9285700 20172000 0 0 0 0 0 0 0 0 0 0 0 0 22485 4297;1694 23456 118684;118685;118686 119841;119842;119843 119842 3 LQVEELLK RLRETEILFHSSLLRLQVEELLKEVRLSEK FHSSLLRLQVEELLKEVRLSEKKKDRIDAF R L Q L K E 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q9H6R4;A0A0A0MRW6 Q9H6R4 86 93 NOL6 Nucleolar protein 6 yes no 2 0.021047 45.952 By matching By MS/MS By matching 2 2 1 1.0192 1.03 10.984 5 Median NaN NaN NaN 0 0 Median 1.1936 1.0453 19.156 2 0 Median 0.98907 1.0489 2.5763 2 0 Median 1.0721 0.9318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7900300 3648800 4251500 0 0 0 2116400 948260 1168200 5143100 2397700 2745400 640770 302810 337950 0 0 0 0 0 0 22486 3976 23457 118687;118688;118689;118690;118691 119844 119844 1 LQVEEVHQLSR DQASITARNHIQLVKLQVEEVHQLSRKAET QLVKLQVEEVHQLSRKAETKLAEAQIEELR K L Q S R K 0 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 11 0 1336.7099 Q9NR28 Q9NR28 192 202 DIABLO Diablo homolog, mitochondrial yes yes 2;3 0.00032421 111.06 By MS/MS By MS/MS 1 4 1.0252 0.87141 64.937 4 Median 1.0386 1.0202 NaN 1 1 Median 1.0119 0.83832 71.471 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41787000 23862000 17925000 6555700 3128600 3427100 35231000 20733000 14498000 0 0 0 0 0 0 0 0 0 0 0 0 22487 4075 23458 118692;118693;118694;118695;118696 119845;119846;119847;119848;119849 119845 5 LQVELDNVTGLLSQSDSK EGERVRTELADKVTKLQVELDNVTGLLSQS ELDNVTGLLSQSDSKSSKLTKDFSALESQL K L Q S K S 0 0 1 2 0 2 1 1 0 0 4 1 0 0 0 3 1 0 0 2 0 0 18 0 1945.0004 P35579 P35579 1278 1295 MYH9 Myosin-9 yes yes 2 2.0464E-78 248.64 By MS/MS By MS/MS 1 4 1.0766 0.95105 34.647 5 Median 1.2481 1.2078 NaN 1 0 Median 1.0628 0.91864 33.943 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 273170000 127530000 145640000 8986200 3991600 4994700 264180000 123530000 140650000 0 0 0 0 0 0 0 0 0 0 0 0 22488 2244 23459 118697;118698;118699;118700;118701 119850;119851;119852;119853;119854;119855;119856 119854 7 LQVENQLATNEMK L Q M K 1 0 2 0 0 2 2 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 13 0 1516.7555 REV__H0YJ97 yes no 2 0.0081813 37.191 By MS/MS 3 0.65249 0.65269 13.211 3 Plateau 0.65249 0.65269 13.211 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23536000 17127000 6409000 23536000 17127000 6409000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22489 4523 23460 118702;118703;118704 119857 119857 1 LQVEPAVDTSGVQCYGPGIEGQGVFR TIKYGGQPVPNFPSKLQVEPAVDTSGVQCY VQCYGPGIEGQGVFREATTEFSVDARALTQ K L Q F R E 1 1 0 1 1 3 2 5 0 1 1 0 0 1 2 1 1 0 1 4 0 0 26 0 2762.3334 P21333;Q60FE5;A0A087WWY3 P21333 1247 1272 FLNA Filamin-A no no 3 3.0968E-05 32.04 By MS/MS 2 0.70143 0.60701 4.5215 2 Median NaN NaN NaN 0 0 Median 0.70143 0.60701 4.5215 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4077300 2410100 1667200 0 0 0 4077300 2410100 1667200 0 0 0 0 0 0 0 0 0 0 0 0 22490 2088;3120 23461 118705;118706 119858;119859 119859 2 LQVEQEENR ESSQYLTRITIAPQKLQVEQEENRFSFRHS TIAPQKLQVEQEENRFSFRHSTSVSSLAER K L Q N R F 0 1 1 0 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1143.552 Q9H1A4;H0Y564 Q9H1A4 906 914 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.01817 41.029 By MS/MS By MS/MS 1 1 0.92208 0.90915 6.4606 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85652 0.95165 NaN 1 0 Median 0.99265 0.86855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1808900 929770 879130 0 0 0 0 0 0 1366200 686400 679820 442670 243370 199310 0 0 0 0 0 0 22491 3933 23462 118707;118708 119860;119861 119860 2 LQVGQGVSLTLK LTSHLNDTFRFDSEKLQVGQGVSLTLKTTE SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG K L Q L K T 0 0 0 0 0 2 0 2 0 0 3 1 0 0 0 1 1 0 0 2 0 0 12 0 1241.7343 Q14690;A0A3B3IUD7 Q14690 970 981 PDCD11 Protein RRP5 homolog yes no 2 0.001592 51.092 By matching By MS/MS By matching 1 1 1 1.4206 1.5825 19.828 3 Median NaN NaN NaN 0 0 Median 1.3903 1.2048 NaN 1 0 Median 1.4206 1.5825 NaN 1 0 Median 1.9699 1.7719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5619200 2286800 3332400 0 0 0 675950 317530 358420 4737500 1896500 2841000 205760 72789 132970 0 0 0 0 0 0 22492 448 23463 118709;118710;118711 119862 119862 1 LQVLLTYR ALCVSFPQPCRAAERLQVLLTYRVGEGPGV PCRAAERLQVLLTYRVGEGPGVCWLAPEQT R L Q Y R V 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 1 1 0 0 8 0 1004.6019 Q9H4A4;A6NKB8;A0A087WU27;A0A087WUS4 Q9H4A4 136 143 RNPEP Aminopeptidase B yes no 2 0.0028204 129.4 By MS/MS 1 0.61831 0.58608 NaN 1 Median 0.61831 0.58608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13982000 7525000 6457400 13982000 7525000 6457400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22493 3964 23464 118712 119863;119864 119864 2 LQVLVGDVLK AELHKRVQGTPVASKLQVLVGDVLKTDLPF PVASKLQVLVGDVLKTDLPFFDTCVANLPY K L Q L K T 0 0 0 1 0 1 0 1 0 0 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 Q9UNQ2;A0A0C4DGB1;A0A494C0G7;D6RCL3 Q9UNQ2 107 116 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0070645 48.283 By MS/MS By matching By matching 2 1 1 1.3377 1.1984 16.72 4 Median 1.2636 1.2438 28.506 2 0 Median NaN NaN NaN 0 0 Median 1.222 1.1691 NaN 1 0 Median 1.4644 1.2285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9030600 4254400 4776100 5220700 2297700 2923000 0 0 0 3662900 1892400 1770500 146960 64372 82592 0 0 0 0 0 0 22494 4348 23465 118713;118714;118715;118716 119865 119865 1 LQVMANSR GGKLIFYDLRGEGVKLQVMANSRNYKSEEE LRGEGVKLQVMANSRNYKSEEEFIHINNKL K L Q S R N 1 1 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 8 0 917.47529 Q15046;H3BVA8 Q15046 154 161 KARS Lysine--tRNA ligase yes no 2 0.002116 92.47 By MS/MS 1 1.3188 1.2947 NaN 1 Median 1.3188 1.2947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961300 1788900 2172400 3961300 1788900 2172400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22495 2919 23466 118717 119866 119866 1 LQVQNGPIGHR FRNAGYAVSLRVQHRLQVQNGPIGHRGEGD VQHRLQVQNGPIGHRGEGDPSGIPIFMVLV R L Q H R G 0 1 1 0 0 2 0 2 1 1 1 0 0 0 1 0 0 0 0 1 0 0 11 0 1217.6629 P57105 P57105 100 110 SYNJ2BP Synaptojanin-2-binding protein yes yes 2;3 3.1322E-05 133.23 By MS/MS By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1 0.93254 0.82808 13.055 6 Median 0.79851 0.7767 NaN 1 0 Median 1.289 1.0962 NaN 1 0 Median 0.77928 0.78943 NaN 1 0 Median 1.0891 0.86862 NaN 1 0 Median 0.73557 0.78734 NaN 1 0 Median 1.1189 0.88353 NaN 1 0 Median 22036000 10221000 11815000 8803900 4838900 3965000 12104000 4845300 7259200 545570 212410 333160 315190 159490 155710 168900 103180 65720 97800 61830 35971 22496 2517 23467 118718;118719;118720;118721;118722;118723;118724 119867;119868;119869;119870;119871 119870 5 LQVSQQEDITK YTARKGKGAFCNGQKLQVSQQEDITKSLLV NGQKLQVSQQEDITKSLLVTELGSSRTPET K L Q T K S 0 0 0 1 0 3 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1287.667 P29218;E5RIP7;H0YBL1;E5RG13 P29218 146 156 IMPA1 Inositol monophosphatase 1 yes no 2 0.0020293 78.655 By MS/MS By MS/MS 3 2 1.0719 0.99542 6.8317 4 Median 1.061 1.0217 5.2907 2 1 Median 1.1299 0.95214 7.8925 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17025000 8177300 8848000 8849700 4500100 4349700 8175600 3677200 4498300 0 0 0 0 0 0 0 0 0 0 0 0 22497 2169 23468 118725;118726;118727;118728;118729 119872;119873;119874;119875 119873 4 LQVTMPGIK ISASGPELQGAGHSKLQVTMPGIKVGGSGV GAGHSKLQVTMPGIKVGGSGVNVNAKGLDL K L Q I K V 0 0 0 0 0 1 0 1 0 1 1 1 1 0 1 0 1 0 0 1 0 0 9 0 985.56304 Q09666 Q09666 244 252 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00081745 96.253 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 1 0.84668 0.81818 68.788 7 Median 0.75503 0.75744 NaN 1 0 Median 0.2094 0.17705 NaN 1 0 Median 1.0696 1.1533 39.501 2 0 Median 1.0248 0.99052 27.033 2 0 Median NaN NaN NaN 0 0 Median 0.89796 0.76983 NaN 1 0 Median 52211000 26857000 25354000 20108000 10308000 9800000 1434400 1186400 248070 24334000 12298000 12036000 5243500 2532800 2710700 0 0 0 1091900 532540 559320 22498 2749 23469;23470 118730;118731;118732;118733;118734;118735;118736 119876;119877;119878;119879;119880;119881;119882 119879 1459 7 LQVTNVLSQPLTQATVK PEGSASDTHEQAILRLQVTNVLSQPLTQAT VTNVLSQPLTQATVKLEHAKSVASRATVLQ R L Q V K L 1 0 1 0 0 3 0 0 0 0 3 1 0 0 1 1 3 0 0 3 0 0 17 0 1839.0466 P04844;Q5JYR4;Q5JYR7 P04844 290 306 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2;3 3.5298E-13 154.74 By MS/MS By MS/MS By MS/MS By matching By matching 5 4 5 1 1 0.96583 0.96414 9.0668 16 Median 0.9149 0.87997 5.0193 5 0 Median 1.2052 1.0479 6.5701 4 0 Median 0.95645 0.95405 7.3739 5 0 Median 1.1709 0.99821 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3043 1.1332 NaN 1 0 Median 167810000 83301000 84513000 119910000 60594000 59311000 12616000 5530200 7086200 32754000 16088000 16666000 2406500 1031400 1375200 0 0 0 132550 57433 75112 22499 1854 23471 118737;118738;118739;118740;118741;118742;118743;118744;118745;118746;118747;118748;118749;118750;118751;118752 119883;119884;119885;119886;119887;119888;119889;119890;119891;119892;119893;119894;119895;119896;119897;119898;119899;119900;119901 119884 19 LQVVASQWTLK MSALGESGWQEDINRLQVVASQWTLKKSLL DINRLQVVASQWTLKKSLLQAWGLILRANI R L Q L K K 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 1 1 1 0 2 0 0 11 0 1271.7238 Q9NU22 Q9NU22 2848 2858 MDN1 Midasin yes yes 2 0.00016921 79.974 By MS/MS By matching 1 1 1.1742 1.1653 0.79006 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0925 1.1718 NaN 1 0 Median 1.262 1.1588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7452300 3431600 4020700 0 0 0 0 0 0 7074200 3264300 3809900 378140 167360 210780 0 0 0 0 0 0 22500 4112 23472 118753;118754 119902;119903 119903 2 LQVVDQPLPVR FHSPNPEIPALLDGRLQVVDQPLPVRGGNV LDGRLQVVDQPLPVRGGNVGINSFGFGGSN R L Q V R G 0 1 0 1 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 3 0 0 11 0 1262.7347 P49327;A0A0U1RQF0 P49327 374 384 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 8.7324E-05 150.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 1 2 3 0.92319 0.84273 16.548 19 Median 0.72467 0.69251 8.6359 5 0 Median 1.0724 0.89927 7.7236 6 0 Median 0.71111 0.78725 10.877 2 0 Median 0.95821 0.84273 NaN 1 0 Median 1.0309 1.0815 8.0444 2 0 Median 0.84275 0.6999 6.2579 3 1 Median 416630000 221330000 195300000 239400000 134850000 104550000 147450000 70085000 77363000 15288000 8720900 6566800 1270600 681150 589430 9238100 4775700 4462400 3985000 2212600 1772400 22501 2377 23473 118755;118756;118757;118758;118759;118760;118761;118762;118763;118764;118765;118766;118767;118768;118769;118770;118771;118772;118773 119904;119905;119906;119907;119908;119909;119910;119911;119912;119913;119914;119915;119916;119917;119918;119919;119920;119921;119922;119923;119924;119925;119926;119927;119928 119904 25 LQVVLNESNADTYAGR KKMENIQKLGNYTLKLQVVLNESNADTYAG QVVLNESNADTYAGRPLPSKAIKFSVKEGK K L Q G R P 2 1 2 1 0 1 1 1 0 0 2 0 0 0 0 1 1 0 1 2 0 0 16 0 1748.8693 A6NHR9;J3KTL8;J3QSH1 A6NHR9 792 807 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.0756E-09 117.23 By MS/MS By MS/MS 1 1 1.1145 1.0985 9.8302 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0709 1.1776 NaN 1 0 Median 1.16 1.0247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6753300 3062800 3690500 0 0 0 0 0 0 5891600 2689600 3201900 861750 373180 488570 0 0 0 0 0 0 22502 518 23474 118774;118775 119929;119930;119931 119929 3 LQVVLNESNADTYAGRPLPSK KKMENIQKLGNYTLKLQVVLNESNADTYAG ESNADTYAGRPLPSKAIKFSVKEGKPEKFS K L Q S K A 2 1 2 1 0 1 1 1 0 0 3 1 0 0 2 2 1 0 1 2 0 0 21 1 2271.1859 A6NHR9;J3KTL8;J3QSH1 A6NHR9 792 812 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 2.0861E-26 149.36 By matching By MS/MS By MS/MS 1 2 1 0.76108 0.81826 22.098 4 Median 1.0741 1.0859 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59972 0.69851 9.2887 2 1 Median 0.92979 0.89761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86163000 47428000 38734000 4128000 1392700 2735300 0 0 0 79098000 44644000 34454000 2936400 1391900 1544500 0 0 0 0 0 0 22503 518 23475 118776;118777;118778;118779 119932;119933;119934;119935;119936 119932 5 LQVWDTAGQER DFKIRTVDIEGKKIKLQVWDTAGQERFKTI KKIKLQVWDTAGQERFKTITTAYYRGAMGI K L Q E R F 1 1 0 1 0 2 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 11 0 1301.6364 P51153 P51153 59 69 RAB13 Ras-related protein Rab-13 yes yes 2 0.00016143 89.247 By MS/MS By MS/MS By MS/MS 1 2 1 1.0656 1.0176 29.738 4 Median 1.1565 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83437 0.8017 23.022 2 2 Median 1.6745 1.385 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37636000 22053000 15582000 14367000 6808800 7557800 0 0 0 21729000 14764000 6965300 1540000 480630 1059300 0 0 0 0 0 0 22504 2430 23476 118780;118781;118782;118783 119937;119938;119939;119940;119941 119937 5 LQWFQNHLDPQK LKNEKALRLNLVGEKLQWFQNHLDPQKKRY GEKLQWFQNHLDPQKKRYSKKDACELIERY K L Q Q K K 0 0 1 1 0 3 0 0 1 0 2 1 0 1 1 0 0 1 0 0 0 0 12 0 1552.7787 D6RA57;H0Y9X1;Q96EY4;D6RE67;D6RC31 D6RA57 55 66 TMA16 Translation machinery-associated protein 16 yes no 3 0.033073 19.89 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.8227 0.76947 10.717 4 Median 0.81774 0.76305 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82769 0.77595 NaN 1 0 Median 1.1257 0.93038 NaN 1 0 Median 0.71253 0.72919 NaN 1 0 Median NaN NaN NaN 0 0 Median 24550000 14725000 9825200 11303000 7225000 4078500 0 0 0 10342000 6125700 4216500 1255300 585190 670060 1649300 789220 860110 0 0 0 22505 811 23477 118784;118785;118786;118787 119942;119943;119944 119942 3 LQWLHQQELSEMK STIAEIRRLRIEIEKLQWLHQQELSEMKHN EKLQWLHQQELSEMKHNLELTMAEMRQSLE K L Q M K H 0 0 0 0 0 3 2 0 1 0 3 1 1 0 0 1 0 1 0 0 0 0 13 0 1668.8294 Q9ULU4 Q9ULU4 970 982 ZMYND8 Protein kinase C-binding protein 1 no no 3 0.0053877 30.998 By MS/MS 1 0.94239 1.018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94239 1.018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5780200 2616500 3163700 0 0 0 0 0 0 5780200 2616500 3163700 0 0 0 0 0 0 0 0 0 22506 4328 23478 118788 119945;119946;119947 119946 3 LQYAIISEAWR PMRVQKEVAGFVLNRLQYAIISEAWRLVER VLNRLQYAIISEAWRLVERLRWTCWCNPFF R L Q W R L 2 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 0 11 0 1348.7139 A0A2R8YFQ7;A0A2R8YCZ4;A0A2R8Y4K2;Q9Y2S2;A0A087WW38 A0A2R8YFQ7 198 208 CRYL1 Lambda-crystallin homolog yes no 2 0.00077434 62.823 By MS/MS 1 1.06 1.021 NaN 1 Median 1.06 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2626200 1089600 1536700 2626200 1089600 1536700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22507 364 23479 118789 119948;119949 119949 2 LQYAVSGLEPLAWSEDHR AAFRLMVTRREPAVKLQYAVSGLEPLAWSE AVSGLEPLAWSEDHRVSVSTARSIAVLELI K L Q H R V 2 1 0 1 0 1 2 1 1 0 3 0 0 0 1 2 0 1 1 1 0 0 18 0 2070.0171 Q9UKN8;F2Z356 Q9UKN8 60 77 GTF3C4 General transcription factor 3C polypeptide 4 yes no 3 1.4812E-06 71.085 By MS/MS 1 0.74753 0.79502 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74753 0.79502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7714100 4296600 3417500 0 0 0 0 0 0 7714100 4296600 3417500 0 0 0 0 0 0 0 0 0 22508 4314 23480 118790 119950;119951 119951 2 LQYEGIFIK VKIHEATGMPAGKQKLQYEGIFIKDSNSLA PAGKQKLQYEGIFIKDSNSLAYYNMANGAV K L Q I K D 0 0 0 0 0 1 1 1 0 2 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1109.6121 Q15459 Q15459 757 765 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.012368 46.426 By MS/MS By matching By MS/MS By matching 1 4 3 2 1.1125 0.99822 27.275 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1263 1.2256 NaN 1 0 Median 1.161 0.99822 32.15 4 0 Median 1.0988 1.1222 20.536 3 0 Median 0.91142 0.7647 17.701 2 0 Median 34963000 16231000 18732000 0 0 0 0 0 0 14213000 6625800 7587500 3693800 1735800 1958000 16919000 7799900 9119200 137060 69419 67640 22509 2954 23481 118791;118792;118793;118794;118795;118796;118797;118798;118799;118800 119952;119953;119954;119955 119953 4 LQYFMEQFYGIIR VSNMVAKNAEMHKNKLQYFMEQFYGIIRNV NKLQYFMEQFYGIIRNVDSNNKELSIAIRG K L Q I R N 0 1 0 0 0 2 1 1 0 2 1 0 1 2 0 0 0 0 2 0 0 0 13 0 1706.849 P78527 P78527 338 350 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.4417E-05 86.275 By MS/MS 2 1.4959 1.3062 5.6153 2 Median NaN NaN NaN 0 0 Median 1.4959 1.3062 5.6153 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 985490 405030 580460 0 0 0 985490 405030 580460 0 0 0 0 0 0 0 0 0 0 0 0 22510 2647 23482 118801;118802 119956 119956 1 LQYHAGLASGLLNQQSLK PLYSQLLQAYKWSNKLQYHAGLASGLLNQQ HAGLASGLLNQQSLKRSANQMGVSAKRRPK K L Q L K R 2 0 1 0 0 3 0 2 1 0 5 1 0 0 0 2 0 0 1 0 0 0 18 0 1940.048 Q6P2C8;A0A494C0K7;A0A494C0P0 Q6P2C8 117 134 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 3 2.9786E-06 53.255 By matching By MS/MS By matching 1 1 1 1.2113 1.0208 19.6 3 Median NaN NaN NaN 0 0 Median 1.2113 1.0208 NaN 1 0 Median 1.0235 0.98505 NaN 1 0 Median 1.6446 1.4061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15312000 7793500 7518200 0 0 0 2597600 1208100 1389600 12090000 6354800 5735500 623670 230620 393050 0 0 0 0 0 0 22511 460 23483 118803;118804;118805 119957 119957 1 LQYLIDLGR GHSFRRQYKPLSLNRLQYLIDLGRVDPSQP PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG R L Q G R V 0 1 0 1 0 1 0 1 0 1 3 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 Q9P015;E5RIZ4;E5RHF4 Q9P015 101 109 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.0032184 66.621 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.4159 1.2798 33.103 5 Median 0.98788 0.92372 NaN 1 0 Median 1.4159 1.1781 NaN 1 0 Median 1.3064 1.2798 NaN 1 0 Median 1.9278 1.6183 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5101 2.2085 NaN 1 0 Median 19979000 8621600 11358000 10308000 4962500 5345600 6372000 2311200 4060800 2347500 1055100 1292400 546170 185510 360660 0 0 0 405410 107340 298070 22512 4197 23484 118806;118807;118808;118809;118810 119958;119959;119960 119960 3 LQYTEHQQLEGWK KLVKSIIRVVFHDRRLQYTEHQQLEGWKWN RRLQYTEHQQLEGWKWNRPGDRLLDLDIPM R L Q W K W 0 0 0 0 0 3 2 1 1 0 2 1 0 0 0 0 1 1 1 0 0 0 13 0 1658.8053 Q9NZI7;C9JWL3 Q9NZI7 126 138 UBP1 Upstream-binding protein 1 yes no 3 0.0032354 35.204 By matching By MS/MS 1 2 1.0448 0.91238 7.6933 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0448 1.018 NaN 1 0 Median 1.0462 0.89483 2.7479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15910000 7503900 8405700 0 0 0 0 0 0 10377000 4810500 5566400 5532700 2693400 2839300 0 0 0 0 0 0 22513 4187 23485 118811;118812;118813 119961 119961 1 LQYTEHQQLEGWR KLVKSIFRVVFHDRRLQYTEHQQLEGWRWN RRLQYTEHQQLEGWRWNRPGDRILDIDIPM R L Q W R W 0 1 0 0 0 3 2 1 1 0 2 0 0 0 0 0 1 1 1 0 0 0 13 0 1686.8114 Q12800;F8VX55;F8VWL0;Q9NZI6 Q12800 129 141 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 2;3 1.4585E-07 120.09 By MS/MS By MS/MS 2 5 1.048 1.0235 15.485 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0234 1.0277 0.57752 2 0 Median 1.1111 0.92874 18.683 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81154000 37987000 43168000 0 0 0 0 0 0 56301000 26905000 29396000 24854000 11082000 13772000 0 0 0 0 0 0 22514 2760 23486 118814;118815;118816;118817;118818;118819;118820 119962;119963;119964;119965;119966;119967;119968;119969;119970;119971 119970 10 LQYYVPR LRHLQVIFGHLAASRLQYYVPRGFWKQFRL FGHLAASRLQYYVPRGFWKQFRLWGEPVNL R L Q P R G 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 7 0 937.50215 Q93008 Q93008 1659 1665 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.011827 79.454 By MS/MS 1 1.2332 0.98654 NaN 1 Median NaN NaN NaN 0 0 Median 1.2332 0.98654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24252000 10825000 13427000 0 0 0 24252000 10825000 13427000 0 0 0 0 0 0 0 0 0 0 0 0 22515 3573 23487 118821 119972 119972 1 LRAEAGLGALPR ______________________________ ASRLRAEAGLGALPRRALAQYLLFLRLYPV R L R P R R 3 2 0 0 0 0 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 12 1 1222.7146 F5H4N4;Q9NR77 F5H4N4 8 19 PXMP2 Peroxisomal membrane protein 2 yes no 3 0.001109 64.121 By MS/MS 1 0.73728 0.7728 NaN 1 Median 0.73728 0.7728 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795500 2070700 1724800 3795500 2070700 1724800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22516 1032 23488 118822 119973 119973 1 LRAELDEVNK ETARERARLQIEIGKLRAELDEVNKSAKKR IEIGKLRAELDEVNKSAKKREGELTVAQGR K L R N K S 1 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 1 1185.6354 Q03252 Q03252 124 133 LMNB2 Lamin-B2 yes yes 2;3 0.00014186 102.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 6 5 1.1861 1.1475 25.704 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0961 1.1642 NaN 1 0 Median 1.7091 1.6055 43.924 2 0 Median 0.90548 1.0091 8.2662 4 0 Median 1.5186 1.3571 13.811 3 0 Median 119960000 36295000 83666000 0 0 0 0 0 0 17833000 4275200 13558000 5622200 1806400 3815800 66826000 22387000 44440000 29679000 7826700 21852000 22517 2709 23489 118823;118824;118825;118826;118827;118828;118829;118830;118831;118832;118833;118834;118835;118836;118837;118838 119974;119975;119976;119977;119978;119979;119980;119981;119982;119983;119984;119985;119986;119987;119988;119989;119990;119991;119992 119992 19 LRAEPDHMVLGK RKVTLSTDKNKYGIRLRAEPDHMVLGKRLK GIRLRAEPDHMVLGKRLKGAFKAVMTSIKQ R L R G K R 1 1 0 1 0 0 1 1 1 0 2 1 1 0 1 0 0 0 0 1 0 0 12 1 1364.7235 P41252;A0A0A0MSX9;J3KR24 P41252 892 903 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.00018974 72.29 By MS/MS By matching By matching 1 1 1 0.90216 0.83469 38.197 3 Median NaN NaN NaN 0 0 Median 0.90216 0.83469 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0272 0.98717 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53845 0.47605 NaN 1 0 Median 17986000 9258500 8727500 0 0 0 15114000 8012200 7101700 0 0 0 1648200 531040 1117200 0 0 0 1223800 715220 508620 22518 2302 23490 118839;118840;118841 119993 119993 1 LRAETEQGEQQR GTAQQRLAAEQELIRLRAETEQGEQQRQLL LIRLRAETEQGEQQRQLLEEELARLQREAA R L R Q R Q 1 2 0 0 0 3 3 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 12 1 1443.7066 Q15149 Q15149 1855 1866 PLEC Plectin yes yes 3 0.00068836 49.423 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.282 1.2163 5.8401 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0846 1.192 NaN 1 0 Median 1.3117 1.2224 NaN 1 0 Median 1.2529 1.3553 NaN 1 0 Median 1.3788 1.2102 NaN 1 0 Median 3503400 1524600 1978900 0 0 0 0 0 0 637970 302000 335970 341740 156210 185520 1762200 768310 993920 761480 298040 463440 22519 2933 23491 118842;118843;118844;118845 119994;119995;119996;119997;119998 119997 5 LRAPPNATLEHFYLTSGK ATPLAALLNIKEKTRLRAPPNATLEHFYLT PPNATLEHFYLTSGKQPKQVEVELLSRQSG R L R G K Q 2 1 1 0 0 0 1 1 1 0 3 1 0 1 2 1 2 0 1 0 0 0 18 1 2014.0636 Q5SZE2;Q5SZE3;H0YKH6;Q5SZE4;Q5SZE1;H0YNU7;Q96G23 Q5SZE2 76 93 CERS2 Ceramide synthase 2 yes no 3;4 4.3842E-13 94.856 By MS/MS By MS/MS 3 1 0.98165 0.96927 11.04 4 Median 0.9905 1.0356 12.936 3 1 Median 0.97289 0.90714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45388000 21373000 24016000 40794000 18821000 21973000 4594900 2552100 2042800 0 0 0 0 0 0 0 0 0 0 0 0 22520 1192 23492 118846;118847;118848;118849 119999;120000;120001;120002 120001 4 LRDEGHQTLVFSQSR EESGKMIFLMDLLKRLRDEGHQTLVFSQSR LRDEGHQTLVFSQSRQILNIIERLLKNRHF R L R S R Q 0 2 0 1 0 2 1 1 1 0 2 0 0 1 0 2 1 0 0 1 0 0 15 1 1771.8965 B5MDQ0;Q2NKX8 B5MDQ0 349 363 ERCC6L DNA excision repair protein ERCC-6-like yes no 3;4 2.9208E-05 76.391 By MS/MS By MS/MS By MS/MS 4 3 1 1.4391 1.3905 31.796 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0761 1.2757 46.64 4 1 Median 1.4857 1.3648 14.631 3 1 Median NaN NaN NaN 0 0 Median 1.5672 1.4167 NaN 1 0 Median 22229000 9215900 13014000 0 0 0 0 0 0 13140000 5846500 7293800 7436900 2776200 4660700 0 0 0 1652300 593200 1059100 22521 624 23493 118850;118851;118852;118853;118854;118855;118856;118857 120003;120004;120005;120006;120007;120008;120009 120008 7 LRDEIEEK QMESHREAHQKQLSRLRDEIEEKQKIIDEI HQKQLSRLRDEIEEKQKIIDEIRDLNQKLQ R L R E K Q 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 1 1030.5295 O60282;A0A0G2JMZ6 O60282 721 728 KIF5C Kinesin heavy chain isoform 5C yes no 2 0.045586 60.436 By matching By MS/MS 1 2 1.0327 0.96313 12.745 3 Median 0.93365 0.96313 NaN 1 0 Median 1.1332 1.0655 16.027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2168900 1008600 1160300 212190 113200 98990 1956700 895380 1061300 0 0 0 0 0 0 0 0 0 0 0 0 22522 1609 23494 118858;118859;118860 120010 120010 1 LRDLEDSLAR QLSQLQKQLAAKEAKLRDLEDSLARERDTS AKEAKLRDLEDSLARERDTSRRLLAEKERE K L R A R E 1 2 0 2 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1186.6306 P02545;Q3BDU5 P02545 320 329 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 1.2096E-06 164.66 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 5 1.3131 1.2706 21.01 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2162 1.3353 23.56 4 0 Median 1.3884 1.2937 29.761 3 0 Median 1.0096 1.1074 7.9466 2 0 Median 1.4236 1.2586 12.584 3 0 Median 695720000 254150000 441570000 0 0 0 0 0 0 94758000 38177000 56580000 110380000 22131000 88249000 325840000 138830000 187020000 164740000 55013000 109730000 22523 1834;3010 23495 118861;118862;118863;118864;118865;118866;118867;118868;118869;118870;118871;118872;118873;118874;118875;118876;118877;118878;118879;118880;118881 120011;120012;120013;120014;120015;120016;120017;120018;120019;120020;120021;120022;120023;120024;120025;120026;120027;120028;120029;120030;120031;120032;120033;120034;120035;120036;120037 120026 27 LRDLHPDLEGQLK ENDPIDEVQGFLFGKLRDLHPDLEGQLKEL GKLRDLHPDLEGQLKELRKHLVESTNEMAP K L R L K E 0 1 0 2 0 1 1 1 1 0 4 1 0 0 1 0 0 0 0 0 0 0 13 1 1532.8311 Q9NYU2 Q9NYU2 290 302 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 3 2.7169E-07 101.62 By MS/MS By MS/MS 1 1 0.63635 0.61674 2.1967 2 Median 0.6271 0.62639 NaN 1 0 Median 0.64573 0.60723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39228000 22888000 16340000 30397000 17831000 12566000 8831400 5057200 3774200 0 0 0 0 0 0 0 0 0 0 0 0 22524 4179 23496 118882;118883 120038;120039;120040 120040 3 LRDLMEAAFK SSDANPVRYGRRRMKLRDLMEAAFKFLQQE RRRMKLRDLMEAAFKFLQQEQSVFRELWDW K L R F K F 2 1 0 1 0 0 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 10 1 1192.6274 Q9NU22;Q5T795 Q9NU22 145 154 MDN1 Midasin yes no 3 0.0011034 67.726 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2365900 0 2365900 0 0 0 0 0 0 2365900 0 2365900 0 0 0 0 0 0 0 0 0 22525 4112 23497 118884 120041 120041 1 LRDLPERDQFR RYNQLSRAVRELARRLRDLPERDQFRVRAS LARRLRDLPERDQFRVRASAALLDKLYALG R L R F R V 0 3 0 2 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 11 2 1443.7583 Q9NV31 Q9NV31 62 72 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 3 0.0023108 52.247 By MS/MS 2 0.979 1.1146 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.979 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median 7948900 3860600 4088300 0 0 0 0 0 0 0 0 0 0 0 0 7948900 3860600 4088300 0 0 0 22526 4122 23498 118885;118886 120042;120043 120042 2 LRDNGLLAKPTHGDIIR IKETKDWDAWKVCLRLRDNGLLAKPTHGDI DNGLLAKPTHGDIIRFAPPLVIKEDELRES R L R I R F 1 2 1 2 0 0 0 2 1 2 3 1 0 0 1 0 1 0 0 0 0 0 17 2 1888.0643 P04181 P04181 397 413 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3;4 6.3375E-06 70.235 By MS/MS By MS/MS By matching By MS/MS 4 1 1 1 0.99876 1.1131 12.705 7 Median 0.99944 1.1195 12.607 4 0 Median 0.85413 0.94632 NaN 1 0 Median 0.99504 1.2765 NaN 1 0 Median 1.0031 1.0687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35636000 15911000 19725000 21753000 9947000 11806000 3061600 1141600 1920000 1877500 933280 944230 8944000 3888800 5055200 0 0 0 0 0 0 22527 1846 23499 118887;118888;118889;118890;118891;118892;118893 120044;120045;120046;120047;120048 120044 5 LRDPEVVASELGYVFQAITLTR PSFPEPLREEQDLERLRDPEVVASELGYVF ASELGYVFQAITLTRQRLAGRVPLIGFAGA R L R T R Q 2 2 0 1 0 1 2 1 0 1 3 0 0 1 1 1 2 0 1 3 0 0 22 1 2476.3326 A0A494C0Q8;A0A494C085;P06132;A0A494C0S8;A0A1B0GVN9;H0Y5R6;Q5T446;A0A494BZY8;A0A1B0GVZ4 A0A494C0Q8 86 107 UROD Uroporphyrinogen decarboxylase yes no 3 9.5112E-07 40.012 By MS/MS 1 1.079 1.0076 NaN 1 Median NaN NaN NaN 0 0 Median 1.079 1.0076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5040900 2409100 2631800 0 0 0 5040900 2409100 2631800 0 0 0 0 0 0 0 0 0 0 0 0 22528 458 23500 118894 120049 120049 1 LRDTDTLDLSGPAR GTAQRCTSAEEFVQRLRDTDTLDLSGPARD RLRDTDTLDLSGPARDFALRLWNKVPRKAV R L R A R D 1 2 0 3 0 0 0 1 0 0 3 0 0 0 1 1 2 0 0 0 0 0 14 1 1528.7845 O60231;A0A140T947 O60231 47 60 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 0.00025874 59.709 By MS/MS By matching 1 1 1.0306 1.0979 2.2532 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91722 1.1155 NaN 1 0 Median 1.1579 1.0805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7429000 4079300 3349700 0 0 0 0 0 0 6981400 3848400 3133000 447600 230910 216690 0 0 0 0 0 0 22529 1605 23501 118895;118896 120050 120050 1 LRDTEEMLSK KAGKGGPTPQEAIQRLRDTEEMLSKKQEFL EAIQRLRDTEEMLSKKQEFLEKKIEQELTA R L R S K K 0 1 0 1 0 0 2 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 10 1 1220.6071 Q9H444 Q9H444 29 38 CHMP4B Charged multivesicular body protein 4b yes yes 2;3 0.00011108 91.752 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1.1402 1.1782 22.532 9 Median 1.1377 1.128 24.578 2 0 Median 1.2175 1.101 9.5795 2 0 Median 1.0807 1.1874 NaN 1 0 Median 1.27 1.1985 0.66248 2 0 Median 0.67479 0.72762 6.235 2 0 Median NaN NaN NaN 0 0 Median 26532000 12742000 13790000 4376900 2135000 2241800 5492200 2543600 2948600 1691000 779950 911070 11112000 4921100 6191100 3859600 2362200 1497400 0 0 0 22530 3961 23502 118897;118898;118899;118900;118901;118902;118903;118904;118905 120051;120052;120053;120054;120055;120056;120057;120058;120059 120056 9 LRDVAALNGLYR LSLSQRQLSEEERGRLRDVAALNGLYRVRI RGRLRDVAALNGLYRVRIPRRPGALDGLEA R L R Y R V 2 2 1 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 12 1 1359.7623 M0R2A0;Q5UCC4 M0R2A0 98 109 EMC10 ER membrane protein complex subunit 10 yes no 3 0.0018044 40.475 By matching By MS/MS By MS/MS 1 1 1 0.83979 0.90408 14.643 3 Median 0.83979 0.90408 NaN 1 0 Median 1.3288 1.1285 NaN 1 0 Median 0.82542 0.85582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5596500 2883100 2713400 2004300 940910 1063400 565590 226090 339510 3026600 1716100 1310400 0 0 0 0 0 0 0 0 0 22531 1435 23503 118906;118907;118908 120060;120061;120062 120061 3 LRDVLQQR NLSRELLQESALIRKLRDVLQQRLIKFFID ESALIRKLRDVLQQRLIKFFIDQSKKDAEK K L R Q R L 0 2 0 1 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 1 1026.5934 I3L0K7;I3L239;Q12931 Q12931 414 421 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.016832 88.948 By matching By MS/MS 1 1 1.3509 1.2779 14.824 2 Median 1.168 1.1507 NaN 1 0 Median 1.5626 1.4191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12586000 4990600 7595200 1308100 594530 713540 11278000 4396100 6881600 0 0 0 0 0 0 0 0 0 0 0 0 22532 2771;1269 23504 118909;118910 120063;120064 120063 2 LRDYIWNTLNSGR TQLQKEVGKDVSDEKLRDYIWNTLNSGRVV EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP K L R G R V 0 2 2 1 0 0 0 1 0 1 2 0 0 0 0 1 1 1 1 0 0 0 13 1 1606.8216 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 328 340 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2;3 7.1539E-07 134.75 By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 1.3338 1.2456 34.113 9 Median 1.1753 1.1868 62.335 3 0 Median 1.352 1.2407 0.5575 2 0 Median 1.2456 1.3487 9.7529 2 0 Median 1.3824 1.2895 5.3509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83059000 35536000 47524000 25737000 10714000 15024000 10286000 4285600 6000800 33148000 14580000 18568000 13888000 5956500 7931600 0 0 0 0 0 0 22533 594 23505 118911;118912;118913;118914;118915;118916;118917;118918;118919 120065;120066;120067;120068;120069;120070;120071;120072 120067 8 LREAGLAPVPMIIFAK ALPYIRDVAKQVKARLREAGLAPVPMIIFA REAGLAPVPMIIFAKDGHFALEELAQAGYE R L R A K D 3 1 0 0 0 0 1 1 0 2 2 1 1 1 2 0 0 0 0 1 0 0 16 1 1725.0011 A0A494C0Q8;A0A494C085;P06132;A0A494C0S8;A0A1B0GVN9;H0Y5R6 A0A494C0Q8 213 228 UROD Uroporphyrinogen decarboxylase yes no 2 0.03599 29.936 By MS/MS 1 0.81147 0.86926 NaN 1 Median 0.81147 0.86926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3271400 1915300 1356100 3271400 1915300 1356100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22534 458 23506 118920 120073 120073 1 LREAGLVAQHPPAR ERKLKKERKKEERQRLREAGLVAQHPPARR RLREAGLVAQHPPARRSGAELALDYLCRWA R L R A R R 3 2 0 0 0 1 1 1 1 0 2 0 0 0 2 0 0 0 0 1 0 0 14 1 1513.8477 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 82 95 C7orf50 Uncharacterized protein C7orf50 yes no 3 0.020425 22.991 By matching By matching By MS/MS 1 1 1 0.89396 0.94265 8.2623 3 Plateau 0.88258 0.94342 NaN 1 0 Median 1.0078 0.85593 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89396 0.80047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4570200 2335500 2234700 2739800 1440000 1299800 1189500 567660 621830 0 0 0 640880 327820 313060 0 0 0 0 0 0 22535 718 23507 118921;118922;118923 120074 120074 1 LREAIAELER TLEIQRQQSDHDAERLREAIAELEREKEKL HDAERLREAIAELEREKEKLQQEAKLLQLK R L R E R E 2 2 0 0 0 0 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1198.667 Q15149 Q15149 2585 2594 PLEC Plectin yes yes 2;3 0.00039291 86.344 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 1 1 1 1.2951 1.2649 40.438 8 Median 1.1069 1.2028 6.7444 2 0 Median 1.4796 1.3867 39.869 3 2 Median 0.45148 0.49618 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4984 1.6209 NaN 1 1 Median 1.4448 1.2681 NaN 1 0 Median 44065000 20121000 23944000 12121000 5282100 6838500 27633000 12677000 14956000 1647100 1063000 584120 0 0 0 1690300 760430 929890 974370 338650 635710 22536 2933 23508 118924;118925;118926;118927;118928;118929;118930;118931 120075;120076;120077;120078;120079 120076 5 LREANQQQQFNR LWKKLLEATELKGIKLREANQQQQFNRNVE GIKLREANQQQQFNRNVEDIELWLYEVEGH K L R N R N 1 2 2 0 0 4 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 12 1 1530.7651 A0A0D9SF54;Q13813 Q13813 674 685 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.00048936 51.841 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0108 1.0457 16.347 4 Median 1.3027 1.3931 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87731 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91209 0.98667 NaN 1 0 Median 1.1202 0.98316 NaN 1 0 Median 3575400 1717300 1858100 282990 126840 156150 0 0 0 1343700 683510 660220 0 0 0 956400 447670 508740 992290 459290 532990 22537 264;2838 23509 118932;118933;118934;118935 120080;120081;120082;120083 120081 4 LREAQNDLEQVLR QHQEQQALQQSTTAKLREAQNDLEQVLRQI AKLREAQNDLEQVLRQIGDKDQKIQNLEAL K L R L R Q 1 2 1 1 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 13 1 1582.8427 Q15075 Q15075 504 516 EEA1 Early endosome antigen 1 yes yes 2 0.0032653 78.342 By MS/MS 1 0.63985 0.68426 NaN 1 Median 0.63985 0.68426 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9302800 5011100 4291700 9302800 5011100 4291700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22538 2926 23510 118936 120084 120084 1 LREDENAEPVGTTYQK NGLARLSSPVLHRLRLREDENAEPVGTTYQ REDENAEPVGTTYQKTDAAVEMKRINREQF R L R Q K T 1 1 1 1 0 1 3 1 0 0 1 1 0 0 1 0 2 0 1 1 0 0 16 1 1848.8854 Q16643;D6R9W4 Q16643 150 165 DBN1 Drebrin yes no 2;3 8.827E-06 88.021 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 2 2 0.92374 0.94534 27.684 16 Median 0.84833 0.8839 16.938 4 1 Median 0.96676 1.0569 25.98 4 0 Median 0.6932 0.76063 14.586 2 1 Median 1.6621 1.5136 50.485 2 0 Median 0.85931 0.94885 0.78219 2 0 Median 1.1179 1.0026 23.353 2 0 Median 72494000 36768000 35726000 33419000 17041000 16378000 13477000 6099300 7377600 13759000 7754000 6005000 3912300 1666400 2245900 6835000 3612800 3222200 1092200 594350 497830 22539 2991 23511 118937;118938;118939;118940;118941;118942;118943;118944;118945;118946;118947;118948;118949;118950;118951;118952 120085;120086;120087;120088;120089;120090;120091;120092;120093;120094;120095;120096;120097;120098 120088 14 LREDLER DGKYSQVLANGLDNKLREDLERLKKIRAHR LANGLDNKLREDLERLKKIRAHRGLRHFWG K L R E R L 0 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 929.49304 P62269;J3JS69 P62269 107 113 RPS18 40S ribosomal protein S18 yes no 2 0.0079355 130.22 By MS/MS 1 1.1422 1.0449 NaN 1 Median NaN NaN NaN 0 0 Median 1.1422 1.0449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23675000 11092000 12583000 0 0 0 23675000 11092000 12583000 0 0 0 0 0 0 0 0 0 0 0 0 22540 2578 23512 118953 120099 120099 1 LREEIEELKR EGAQMNGIQPEEIGRLREEIEELKRNQELL EEIGRLREEIEELKRNQELLQSQLTEKDSM R L R K R N 0 2 0 0 0 0 4 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 2 1313.7303 O60763 O60763 735 744 USO1 General vesicular transport factor p115 yes yes 2;3 0.00020902 112.83 By MS/MS By MS/MS 2 2 1.2126 1.3106 24.43 4 Median 1.0001 1.0771 2.2698 2 0 Median 1.509 1.6366 5.9377 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44676000 18440000 26235000 16483000 7979200 8503300 28193000 10461000 17732000 0 0 0 0 0 0 0 0 0 0 0 0 22541 1630 23513 118954;118955;118956;118957 120100;120101;120102;120103;120104 120101 5 LREELKPIAFAR HFGYCDEIDLTELVKLREELKPIAFARGIK LVKLREELKPIAFARGIKLSFMPFFLKAAS K L R A R G 2 2 0 0 0 0 2 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 2 1441.8405 P11182;Q5VVL7 P11182 290 301 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 3 3.7857E-05 90.434 By matching By matching By MS/MS 1 1 1 1.2698 1.3528 44.76 3 Plateau 0.49715 0.5533 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76922 0.90025 NaN 1 0 Median 1.2698 1.3528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35203000 15301000 19903000 2126000 1174000 952010 0 0 0 6530600 3224400 3306200 26547000 10902000 15644000 0 0 0 0 0 0 22542 1955 23514 118958;118959;118960 120105 120105 1 LREFASHLQQLQDALNELTEEHSK KINQLSEENGDLSFKLREFASHLQQLQDAL QLQDALNELTEEHSKATQEWLEKQAQLEKE K L R S K A 2 1 1 1 0 3 4 0 2 0 5 1 0 1 0 2 1 0 0 0 0 0 24 1 2835.4151 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 327 350 NUMA1 Nuclear mitotic apparatus protein 1 no no 4 2.9849E-16 66.383 By MS/MS 1 1.1319 1.0705 NaN 1 Median NaN NaN NaN 0 0 Median 1.1319 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4823100 1926400 2896700 0 0 0 4823100 1926400 2896700 0 0 0 0 0 0 0 0 0 0 0 0 22543 2905;77 23515 118961 120106;120107 120106 2 LREFEEGLVSQYK TEAEKSTKTRKETQKLREFEEGLVSQYKFY QKLREFEEGLVSQYKFYLENLEQMVKDWKQ K L R Y K F 0 1 0 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 1 1596.8148 Q8WTT2 Q8WTT2 294 306 NOC3L Nucleolar complex protein 3 homolog yes yes 2;3 7.7725E-05 79.875 By matching By MS/MS By matching 1 3 1 1.0946 1.1736 10.743 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89345 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0946 1.2041 12.943 3 0 Median 1.3399 1.1736 NaN 1 0 Median 37879000 19196000 18683000 0 0 0 0 0 0 5944700 3094300 2850400 0 0 0 31040000 15715000 15326000 894170 386930 507240 22544 3484 23516 118962;118963;118964;118965;118966 120108;120109;120110 120109 3 LREFQESFK ELQAKTGSLEEMTQRLREFQESFKNIEKKV EEMTQRLREFQESFKNIEKKVEGAKHQLEI R L R F K N 0 1 0 0 0 1 2 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 9 1 1182.6033 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5012 5020 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 0.010219 69.812 By MS/MS By MS/MS 1 1 2.9046 3.0301 NaN 1 Median 2.9046 3.0301 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19030000 4585200 14445000 16700000 4585200 12115000 0 0 0 2330100 0 2330100 0 0 0 0 0 0 0 0 0 22545 1220 23517 118967;118968 120111;120112 120112 2 LREGLEAGTPAAGEK ALHWLLRCTAASAERLREGLEAGTPAAGEK LREGLEAGTPAAGEKQLAMCLQRLEKTLSS R L R E K Q 3 1 0 0 0 0 3 3 0 0 2 1 0 0 1 0 1 0 0 0 0 0 15 1 1497.7787 F5GY88;A0A0B4J1W0;O75448;F5H5K2;B4DDR8;E9PFL1;J3KTL3;J3KSU0;F5H2D6 F5GY88 142 156 MED24 Mediator of RNA polymerase II transcription subunit 24 yes no 3 0.023962 20.524 By MS/MS 1 0.36645 0.41677 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36645 0.41677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2073300 1234700 838630 0 0 0 0 0 0 2073300 1234700 838630 0 0 0 0 0 0 0 0 0 22546 212 23518 118969 120113;120114 120114 2 LREIEENQKR EERKKVETEAKIKQKLREIEENQKRIEKLE KIKQKLREIEENQKRIEKLEEYITTSKQSL K L R K R I 0 2 1 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 2 1313.7052 Q14683;G8JLG1 Q14683 425 434 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.0020444 49.35 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.1052 1.152 20.837 6 Median NaN NaN NaN 0 0 Median 1.0608 1.1506 NaN 1 0 Median 0.81617 0.92009 NaN 1 0 Median 1.1514 1.1533 NaN 1 0 Median 1.1519 1.3052 36.13 2 0 Median 1.4428 1.2506 NaN 1 0 Median 4611400 2269900 2341500 0 0 0 588010 264930 323080 625070 311200 313870 112740 50309 62431 3167300 1602600 1564700 118250 40836 77418 22547 2889 23519 118970;118971;118972;118973;118974;118975 120115;120116;120117;120118 120117 4 LREIFGLYGQTTGK LGNKIDRTDAISEEKLREIFGLYGQTTGKG KLREIFGLYGQTTGKGNVTLKELNARPMEV K L R G K G 0 1 0 0 0 1 1 3 0 1 2 1 0 1 0 0 2 0 1 0 0 0 14 1 1581.8515 Q9NR31;H0Y5E8 Q9NR31 147 160 SAR1A GTP-binding protein SAR1a yes no 2;3 0.00028992 75.695 By MS/MS By MS/MS By matching By matching By matching By matching 3 5 2 2 2 1 1.1869 1.1583 58.398 15 Median 1.175 1.2227 5.074 3 1 Median 1.2105 1.1413 49.636 5 0 Median 1.3354 1.4103 72.882 2 0 Median 1.4757 1.3063 49.427 2 0 Median 1.3412 1.4865 148.36 2 0 Median 1.4484 1.1583 NaN 1 0 Median 92402000 40908000 51493000 68375000 29963000 38413000 4197900 2284900 1913000 13143000 6556800 6585800 338540 137850 200690 4550900 1341200 3209700 1796400 624990 1171400 22548 4077 23520 118976;118977;118978;118979;118980;118981;118982;118983;118984;118985;118986;118987;118988;118989;118990 120119;120120;120121;120122;120123 120121 5 LRELGPDGEEAEGPGAGDGPPR QRKSLYESFVSSSDRLRELGPDGEEAEGPG GEEAEGPGAGDGPPRSFDWGYEERSGAHSS R L R P R S 2 2 0 2 0 0 4 6 0 0 2 0 0 0 4 0 0 0 0 0 0 0 22 1 2175.0192 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 143 164 NELFE Negative elongation factor E yes no 3 1.8238E-23 114.63 By MS/MS By MS/MS 1 1 0.4367 0.43887 15.481 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36331 0.39336 NaN 1 0 Median 0.52493 0.48964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11113000 7004200 4108400 0 0 0 0 0 0 5759700 3886400 1873300 5352900 3117800 2235100 0 0 0 0 0 0 22549 2059 23521 118991;118992 120124;120125;120126 120124 3 LRELLIR GLSQTELEKQRQRQRLRELLIRQQIQRNTL EKQRQRQRLRELLIRQQIQRNTLRQEKETA R L R I R Q 0 2 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 7 1 911.59164 O14686 O14686 2686 2692 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.035201 89.296 By MS/MS 1 1.0856 1.1931 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0856 1.1931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8968000 4203700 4764300 0 0 0 0 0 0 8968000 4203700 4764300 0 0 0 0 0 0 0 0 0 22550 1490 23522 118993 120127;120128 120128 2 LRELPADLAR PGLPQLQSLNLSGNRLRELPADLARCAPRL LSGNRLRELPADLARCAPRLQSLNLTGNCL R L R A R C 2 2 0 1 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 10 1 1152.6615 Q8N1G4 Q8N1G4 141 150 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.017861 55.549 By MS/MS 1 1.009 0.99413 NaN 1 Median 1.009 0.99413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7418500 3816100 3602400 7418500 3816100 3602400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22551 3359 23523 118994 120129;120130 120130 2 LREMFGLYGQTTGK LGNKIDRPEAISEERLREMFGLYGQTTGKG RLREMFGLYGQTTGKGSISLKELNARPLEV R L R G K G 0 1 0 0 0 1 1 3 0 0 2 1 1 1 0 0 2 0 1 0 0 0 14 1 1599.8079 Q9Y6B6;D6RD69;Q9H029;D6R9R5 Q9Y6B6 147 160 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b yes no 2;3 1.5226E-14 139.89 By MS/MS 3 0.21081 0.21865 108.96 3 Median 0.21081 0.21865 108.96 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 248350000 212230000 36121000 248350000 212230000 36121000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22552 4487 23524;23525 118995;118996;118997 120131;120132;120133 120133 1999 3 LRENLADMEAK QKEEQFNMLSSDLEKLRENLADMEAKFREK DLEKLRENLADMEAKFREKDEREEQLIKAK K L R A K F 2 1 1 1 0 0 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 11 1 1288.6445 J3KP58;P30622;F5H0N7;F5H6A0;A0A3B3ITA2 J3KP58 776 786 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 3 0.010419 45.915 By MS/MS 1 1.1335 1.082 NaN 1 Median NaN NaN NaN 0 0 Median 1.1335 1.082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1794500 724930 1069500 0 0 0 1794500 724930 1069500 0 0 0 0 0 0 0 0 0 0 0 0 22553 1308 23526 118998 120134 120134 1 LRENSASQISQLEQQLSAK QLVEDVQRLQASLTKLRENSASQISQLEQQ SASQISQLEQQLSAKNSTLKQLEEKLKGQA K L R A K N 2 1 1 0 0 4 2 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 19 1 2129.1077 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 327 345 CUX1 Protein CASP no no 3 3.784E-25 123.55 By MS/MS 2 0.4002 0.46633 85.712 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4002 0.46633 85.712 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37144000 23094000 14050000 0 0 0 0 0 0 37144000 23094000 14050000 0 0 0 0 0 0 0 0 0 22554 388;2847 23527 118999;119000 120135;120136 120135 2 LRENVFQEHQTLK TVQGSGHQEHINIHKLRENVFQEHQTLKEK HKLRENVFQEHQTLKEKELETGPKASHGYG K L R L K E 0 1 1 0 0 2 2 0 1 0 2 1 0 1 0 0 1 0 0 1 0 0 13 1 1640.8635 Q14247 Q14247 58 70 CTTN Src substrate cortactin yes yes 3;4 0.00027986 63.185 By MS/MS By MS/MS By matching By matching 8 13 3 1 1.223 1.1755 25.603 24 Median 1.2008 1.231 29.115 8 1 Median 1.2399 1.1734 25.76 12 2 Median 1.0311 1.0789 20.555 3 0 Median 1.4638 1.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74946000 32747000 42199000 34136000 15515000 18621000 33725000 13771000 19954000 5394800 2809500 2585300 1691100 651720 1039300 0 0 0 0 0 0 22555 2868 23528 119001;119002;119003;119004;119005;119006;119007;119008;119009;119010;119011;119012;119013;119014;119015;119016;119017;119018;119019;119020;119021;119022;119023;119024;119025 120137;120138;120139;120140;120141;120142;120143;120144;120145;120146;120147;120148;120149;120150;120151;120152 120145 16 LREQLQLLEEQHR QRRQQEELLAEENQRLREQLQLLEEQHRAA QRLREQLQLLEEQHRAALAHSEEVTASQVA R L R H R A 0 2 0 0 0 3 3 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 13 1 1690.9115 Q15149;H0YDN1 Q15149 2731 2743 PLEC Plectin yes no 2;3;4 1.0699E-07 154.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 4 2 2 1 1.3787 1.3567 17.733 17 Median 1.2453 1.3533 17.99 4 0 Median 1.4529 1.3618 3.0816 4 1 Median 0.98584 1.1616 10.981 4 0 Median 1.4167 1.3203 3.8467 2 0 Median 1.547 1.6735 3.6422 2 0 Median 2.2023 1.9908 NaN 1 0 Median 350830000 150750000 200070000 119700000 52050000 67651000 137370000 55764000 81604000 68539000 33501000 35037000 3224700 1084500 2140300 20618000 8008000 12610000 1377800 344850 1033000 22556 2933 23529 119026;119027;119028;119029;119030;119031;119032;119033;119034;119035;119036;119037;119038;119039;119040;119041;119042 120153;120154;120155;120156;120157;120158;120159;120160;120161;120162;120163;120164;120165;120166;120167;120168;120169;120170;120171;120172;120173 120155 20 LREQVEER IDCFSEVPTSVFGEKLREQVEERLSFYETG TSVFGEKLREQVEERLSFYETGEIPRKNLD K L R E R L 0 2 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 1 1057.5516 O00567;A0A494C128;H0YDU4;H0Y653 O00567 397 404 NOP56 Nucleolar protein 56 yes no 2 0.023795 78.149 By matching By matching By MS/MS By matching 1 1 3 2 1.0839 1.1879 15.231 7 Median NaN NaN NaN 0 0 Median 1.4876 1.3511 NaN 1 0 Median 1.0839 1.2096 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0142 1.0909 15.304 3 0 Median 1.1775 1.0499 17.466 2 0 Median 11524000 5347100 6176800 0 0 0 497140 196990 300150 4246800 2075800 2171100 0 0 0 6567600 2975000 3592600 212270 99286 112990 22557 1472 23530 119043;119044;119045;119046;119047;119048;119049 120174;120175 120175 2 LREQYGLGPYEAVTPLTK YKRMAVILSLEQGNRLREQYGLGPYEAVTP QYGLGPYEAVTPLTKAADISLDNLVEGKRK R L R T K A 1 1 0 0 0 1 2 2 0 0 3 1 0 0 2 0 2 0 2 1 0 0 18 1 2034.0786 A6NNK5;Q12888;H7BZY0 A6NNK5 1551 1568 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 4.5193E-05 57.414 By MS/MS 2 0.29658 0.34946 85.81 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29658 0.34946 85.81 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26192000 18125000 8066900 0 0 0 0 0 0 26192000 18125000 8066900 0 0 0 0 0 0 0 0 0 22558 530 23531 119050;119051 120176;120177 120177 2 LRETEILFHSSLLR RAELYKEPTNEELNRLRETEILFHSSLLRL RLRETEILFHSSLLRLQVEELLKEVRLSEK R L R L R L 0 2 0 0 0 0 2 0 1 1 4 0 0 1 0 2 1 0 0 0 0 0 14 1 1712.9574 Q9H6R4;A0A0A0MRW6 Q9H6R4 72 85 NOL6 Nucleolar protein 6 yes no 3 0.0011778 55.213 By MS/MS 2 0.94666 1.1513 5.2302 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94666 1.1513 5.2302 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7523000 3687800 3835200 0 0 0 0 0 0 7523000 3687800 3835200 0 0 0 0 0 0 0 0 0 22559 3976 23532 119052;119053 120178;120179 120179 2 LREVLHELYK FQAMLLQPNKKTLKKLREVLHELYKHLDSS KTLKKLREVLHELYKHLDSSAAAIIDAPMD K L R Y K H 0 1 0 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 1 1 0 0 10 1 1298.7347 P21283;E7EV59 P21283 331 340 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 3 0.0019325 60.691 By MS/MS 1 1.2559 1.3457 NaN 1 Median 1.2559 1.3457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11138000 3760500 7378000 11138000 3760500 7378000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22560 2087 23533 119054 120180 120180 1 LREVQTGWEDLR LAAGHPAQAVAINARLREVQTGWEDLRATM NARLREVQTGWEDLRATMRRREESLGEARR R L R L R A 0 2 0 1 0 1 2 1 0 0 2 0 0 0 0 0 1 1 0 1 0 0 12 1 1500.7685 O15020 O15020 1040 1051 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.00080381 70.622 By MS/MS 1 0.69774 0.88141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69774 0.88141 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10796000 6673700 4122700 0 0 0 0 0 0 10796000 6673700 4122700 0 0 0 0 0 0 0 0 0 22561 1512 23534 119055 120181 120181 1 LREVVETPLLHPER VTYSDVGGCKEQIEKLREVVETPLLHPERF KLREVVETPLLHPERFVNLGIEPPKGVLLF K L R E R F 0 2 0 0 0 0 3 0 1 0 3 0 0 0 2 0 1 0 0 2 0 0 14 1 1686.9417 P35998 P35998 187 200 PSMC2 26S protease regulatory subunit 7 yes yes 4 0.0037465 45.614 By MS/MS 1 0.77861 0.78628 NaN 1 Median 0.77861 0.78628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4843400 2754000 2089400 4843400 2754000 2089400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22562 2253 23535 119056 120182 120182 1 LREVVLDANTTQFKR EAQRRLEHLRQALQRLREVVLDANTTQFKR LREVVLDANTTQFKRLKEMNEREKKELQKI R L R K R L 1 2 1 1 0 1 1 0 0 0 2 1 0 1 0 0 2 0 0 2 0 0 15 2 1788.9846 Q01970 Q01970 1068 1082 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3;4 2.7226E-05 77.324 By MS/MS 2 0.96554 1.0885 87.539 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96554 1.0885 87.539 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11703000 6668000 5035200 0 0 0 0 0 0 11703000 6668000 5035200 0 0 0 0 0 0 0 0 0 22563 2695 23536 119057;119058 120183;120184 120184 2 LREYEAALNSK NYAKKESDLNGAQIKLREYEAALNSKDAAL AQIKLREYEAALNSKDAALATALGDKKSLE K L R S K D 2 1 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 1 1292.6725 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 135 145 LMNB1 Lamin-B1 yes no 2;3 4.1681E-05 155.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 10 11 1.3167 1.1815 25.326 28 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90639 0.96472 2.9023 2 0 Median 1.3868 1.2726 37.937 5 1 Median 0.80476 0.86499 21.552 10 1 Median 1.4377 1.2771 7.9734 11 4 Median 506890000 256890000 250000000 0 0 0 0 0 0 67189000 34056000 33133000 24590000 11572000 13018000 315380000 169730000 145650000 99730000 41528000 58202000 22564 2084 23537 119059;119060;119061;119062;119063;119064;119065;119066;119067;119068;119069;119070;119071;119072;119073;119074;119075;119076;119077;119078;119079;119080;119081;119082;119083;119084;119085;119086 120185;120186;120187;120188;120189;120190;120191;120192;120193;120194;120195;120196;120197;120198;120199;120200;120201;120202;120203;120204;120205;120206;120207;120208;120209;120210;120211;120212;120213;120214;120215;120216;120217;120218;120219;120220;120221;120222;120223;120224;120225;120226;120227;120228;120229 120222 45 LRFPAEDEFPDLSAHNNHMAK ______________________________ DEFPDLSAHNNHMAKVLTPELYAELRAKST K L R A K V 3 1 2 2 0 0 2 0 2 0 2 1 1 2 2 1 0 0 0 0 0 0 21 1 2438.1437 P12277;G3V4N7 P12277 12 32 CKB Creatine kinase B-type yes no 3;4;5 8.1942E-12 65.784 By MS/MS By matching By MS/MS 3 3 2 0.71928 0.71915 12.391 8 Median 0.69288 0.74248 19.132 3 0 Median 0.82099 0.76619 5.6215 3 0 Median 0.57574 0.65466 7.9913 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47573000 26466000 21107000 30747000 16515000 14232000 2151900 1039600 1112300 14675000 8911500 5763100 0 0 0 0 0 0 0 0 0 22565 1980 23538 119087;119088;119089;119090;119091;119092;119093;119094 120230;120231;120232;120233;120234 120231 5 LRGDAAAGPGPGAGAGAAAEPEPR PCAQLSASLAAFYGRLRGDAAAGPGPGAGA GPGAGAGAAAEPEPRRRLEIVFVSSDQDQR R L R P R R 8 2 0 1 0 0 2 6 0 0 1 0 0 0 4 0 0 0 0 0 0 0 24 1 2115.0457 Q6DKJ4;A0A0G2JQK5 Q6DKJ4 60 83 NXN Nucleoredoxin yes no 3 4.6859E-16 62.677 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.51246 0.53788 25.07 5 Median 0.51246 0.51751 NaN 1 0 Median 0.50268 0.46131 23.948 2 0 Median 0.49679 0.53788 NaN 1 1 Median 0.84462 0.78784 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14182000 8458500 5723900 2332800 1233000 1099700 7587700 4622400 2965200 2550100 1693800 856280 1711900 909200 802710 0 0 0 0 0 0 22566 3133 23539 119095;119096;119097;119098;119099 120235;120236;120237;120238;120239;120240;120241 120238 7 LRGEVGLLFTNR PSDEYKDNLHQVSKRLRGEVGLLFTNRTKE SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R L R N R T 0 2 1 0 0 0 1 2 0 0 3 0 0 1 0 0 1 0 0 1 0 0 12 1 1373.7779 Q9UKD2 Q9UKD2 96 107 MRTO4 mRNA turnover protein 4 homolog yes yes 2;3 0.00045887 62.408 By MS/MS By matching By matching By MS/MS By matching 2 1 1 3 5 1.4771 1.451 102.54 12 Median 1.6824 1.7983 16.906 2 0 Median 1.2593 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6353 1.4643 NaN 1 0 Median 1.4421 1.564 27.196 3 0 Median 1.4616 1.302 163.13 5 0 Median 49903000 17547000 32356000 16524000 5529300 10995000 917250 404560 512690 0 0 0 157120 76512 80609 16705000 7387700 9317100 15599000 4148700 11451000 22567 4308 23540 119100;119101;119102;119103;119104;119105;119106;119107;119108;119109;119110;119111 120242;120243;120244;120245 120242 4 LRGIEQAVQSHAVAEEEAR QVDNFTLDINTAYARLRGIEQAVQSHAVAE EQAVQSHAVAEEEARKAHQLWLSVEALKYS R L R A R K 4 2 0 0 0 2 4 1 1 1 1 0 0 0 0 1 0 0 0 2 0 0 19 1 2092.0661 Q16891;B9A067;C9J406;H7C463 Q16891 546 564 IMMT MICOS complex subunit MIC60 yes no 3;4 1.3681E-18 129.46 By MS/MS By MS/MS 3 2 0.99406 1.0192 20.354 5 Median 0.93528 0.95894 10.014 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3687 1.2373 22.789 2 2 Median 43003000 20671000 22333000 38387000 18978000 19409000 0 0 0 0 0 0 0 0 0 0 0 0 4616400 1692500 2923900 22568 3001 23541 119112;119113;119114;119115;119116 120246;120247;120248;120249;120250;120251;120252 120247 7 LRGLEAAQIK HALTEKEGKDQELAKLRGLEAAQIKELEEL QELAKLRGLEAAQIKELEELRQTVKQLKEQ K L R I K E 2 1 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1097.6557 A0A087WY61;Q14980 Q14980 1069 1078 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.018512 55.064 By MS/MS 1 0.96866 1.1615 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96866 1.1615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6296800 3407800 2889100 0 0 0 0 0 0 6296800 3407800 2889100 0 0 0 0 0 0 0 0 0 22569 2905;77 23542 119117 120253 120253 1 LRGPSGGGEEPALSQYQR LFLWDGEDSSFLVVRLRGPSGGGEEPALSQ PSGGGEEPALSQYQRLLCINPPLFEIYQVL R L R Q R L 1 2 0 0 0 2 2 4 0 0 2 0 0 0 2 2 0 0 1 0 0 0 18 1 1900.9391 Q99567;J3KMX1 Q99567 83 100 NUP88 Nuclear pore complex protein Nup88 yes no 3 8.1542E-12 106.19 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 3 1 1 0.89616 0.91851 20.262 7 Median 0.80987 0.83035 NaN 1 0 Median 0.94881 0.93873 NaN 1 0 Median 0.89616 0.91851 15.26 3 0 Median 1.0884 0.96445 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57259 0.58746 NaN 1 0 Median 67588000 36030000 31558000 7992000 4133700 3858400 1684500 769340 915190 47064000 26301000 20763000 9643800 4071700 5572100 0 0 0 1202800 754290 448470 22570 3753 23543 119118;119119;119120;119121;119122;119123;119124 120254;120255;120256;120257;120258;120259;120260;120261 120261 8 LRGWEAFLNAPEANR TDYQVEETSREREERLRGWEAFLNAPEANR LRGWEAFLNAPEANRGLRRSDSVSASERAG R L R N R G 3 2 2 0 0 0 2 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 15 1 1742.8853 O43719 O43719 366 380 HTATSF1 HIV Tat-specific factor 1 yes yes 3 0.00011028 62.378 By MS/MS By MS/MS 2 3 1.0547 1.0944 9.6711 5 Median 1.069 1.141 7.5893 2 0 Median NaN NaN NaN 0 0 Median 0.98071 1.0944 10.906 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13159000 6515300 6643900 5352600 2388200 2964300 0 0 0 7806600 4127100 3679500 0 0 0 0 0 0 0 0 0 22571 1586 23544 119125;119126;119127;119128;119129 120262;120263;120264;120265 120264 4 LRGYDYGPHFQGILEASLEGDSGR EPLFLAQAEVYKELRLRGYDYGPHFQGILE FQGILEASLEGDSGRLLWKDNWVSFMDTML R L R G R L 1 2 0 2 0 1 2 5 1 1 3 0 0 1 1 2 0 0 2 0 0 0 24 1 2636.2619 P49327;A0A0U1RQF0 P49327 996 1019 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 2.9092E-08 56.303 By MS/MS 1 0.7239 0.77415 NaN 1 Median 0.7239 0.77415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10173000 5769200 4403600 10173000 5769200 4403600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22572 2377 23545 119130 120266 120266 0 LRHEILLSQSVR MMLVTSGAVAFGKQRLRHEILLSQSVRQAL KQRLRHEILLSQSVRQALHSGQNQLKEMAI R L R V R Q 0 2 0 0 0 1 1 0 1 1 3 0 0 0 0 2 0 0 0 1 0 0 12 1 1449.8416 P54886 P54886 127 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 1.3302E-15 190.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 10 6 5 9 1.3001 1.3444 23.263 35 Median 1.1185 1.1468 42.374 3 0 Median 1.5956 1.4654 35.03 4 0 Median 1.3193 1.4693 20.875 10 3 Median 1.2997 1.1703 12.336 6 2 Median 1.3056 1.4185 20.029 5 0 Median 1.2958 1.1543 14.399 7 0 Median 339430000 145970000 193460000 25989000 11507000 14482000 26473000 11928000 14545000 157040000 66551000 90493000 72406000 31679000 40727000 23618000 9773800 13845000 33899000 14530000 19369000 22573 2488 23546 119131;119132;119133;119134;119135;119136;119137;119138;119139;119140;119141;119142;119143;119144;119145;119146;119147;119148;119149;119150;119151;119152;119153;119154;119155;119156;119157;119158;119159;119160;119161;119162;119163;119164;119165;119166;119167 120267;120268;120269;120270;120271;120272;120273;120274;120275;120276;120277;120278;120279;120280;120281;120282;120283;120284;120285;120286;120287;120288;120289;120290;120291;120292;120293;120294;120295;120296;120297;120298;120299;120300;120301;120302;120303;120304 120291 38 LRHFEELETIMDR VALLVETQMKKLEIKLRHFEELETIMDRER IKLRHFEELETIMDREREALEYQRQQLLAD K L R D R E 0 2 0 1 0 0 3 0 1 1 2 0 1 1 0 0 1 0 0 0 0 0 13 1 1687.8352 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 903 915 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.00043532 129.84 By MS/MS 1 0.85526 1.0402 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85526 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9152300 4594800 4557500 0 0 0 0 0 0 9152300 4594800 4557500 0 0 0 0 0 0 0 0 0 22574 3455;3567 23547 119168 120305 120305 1 LRHFEELETIMDRER VALLVETQMKKLEIKLRHFEELETIMDRER LRHFEELETIMDREREALEYQRQQLLADRQ K L R E R E 0 3 0 1 0 0 4 0 1 1 2 0 1 1 0 0 1 0 0 0 0 0 15 2 1972.9789 Q8TAQ2;F8VXC8 Q8TAQ2 903 917 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 4 0.0040711 27.255 By MS/MS 1 0.83387 0.95151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83387 0.95151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5382700 2905300 2477400 0 0 0 0 0 0 5382700 2905300 2477400 0 0 0 0 0 0 0 0 0 22575 3455 23548 119169 120306 120306 1 LRHPLGEAYATK QIRLLTWDVKDTLLRLRHPLGEAYATKARA LLRLRHPLGEAYATKARAHGLEVEPSALEQ R L R T K A 2 1 0 0 0 0 1 1 1 0 2 1 0 0 1 0 1 0 1 0 0 0 12 1 1354.7357 Q9BSH5 Q9BSH5 21 32 HDHD3 Haloacid dehalogenase-like hydrolase domain-containing protein 3 yes yes 2;3 0.0029408 55.064 By MS/MS By MS/MS By matching 2 1 1 1.1248 1.1113 36.119 4 Median 0.80871 0.84877 4.089 2 0 Median 1.515 1.4136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6423 1.7212 NaN 1 0 Median NaN NaN NaN 0 0 Median 12825000 6251700 6573800 9888500 5257900 4630600 2366700 784410 1582300 0 0 0 0 0 0 570320 209320 361000 0 0 0 22576 3814 23549 119170;119171;119172;119173 120307;120308 120308 2 LRHPTPTMLSIQK IQEPPHKKGMEELKKLRHPTPTMLSIQKWQ KKLRHPTPTMLSIQKWQFSMSAIKEEQELM K L R Q K W 0 1 0 0 0 1 0 0 1 1 2 1 1 0 2 1 2 0 0 0 0 0 13 1 1520.8497 O14776;G3V220 O14776 587 599 TCERG1 Transcription elongation regulator 1 yes no 2;3 6.3684E-06 163.12 By MS/MS By MS/MS 4 3 0.77188 0.78237 21.263 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70948 0.80424 28.125 4 0 Median 0.81411 0.78237 5.0632 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112860000 56455000 56406000 0 0 0 0 0 0 96743000 47747000 48995000 16118000 8707800 7410600 0 0 0 0 0 0 22577 1494 23550;23551 119174;119175;119176;119177;119178;119179;119180 120309;120310;120311;120312;120313;120314;120315;120316;120317;120318;120319;120320 120315 480 12 LRIEEEIR IQAKARQAEAAERSRLRIEEEIRVVRLQLE EAAERSRLRIEEEIRVVRLQLEATERQRGG R L R I R V 0 2 0 0 0 0 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 1 1056.5928 Q15149 Q15149 1585 1592 PLEC Plectin yes yes 2 1.6784E-05 120.15 By MS/MS 1 1.5789 1.7353 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5789 1.7353 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8770500 2667100 6103400 0 0 0 0 0 0 8770500 2667100 6103400 0 0 0 0 0 0 0 0 0 22578 2933 23552 119181 120321 120321 1 LRIEHQTITTPSK IMCILRELYGVGVEKLRIEHQTITTPSKKK EKLRIEHQTITTPSKKKIEISTIASNYHLE K L R S K K 0 1 0 0 0 1 1 0 1 2 1 1 0 0 1 1 3 0 0 0 0 0 13 1 1522.8467 P40938 P40938 67 79 RFC3 Replication factor C subunit 3 yes yes 3 0.020866 23.842 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.9569 1.023 3.8239 5 Median 0.89222 0.95369 NaN 1 0 Median 1.0962 1.023 NaN 1 0 Median 0.92858 1.0402 2.3737 2 0 Median 1.1683 1.0275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4836200 2303400 2532800 912590 493520 419070 520140 250340 269800 2543700 1270500 1273300 859740 289110 570630 0 0 0 0 0 0 22579 2294 23553 119182;119183;119184;119185;119186 120322;120323 120323 2 LRITESEEVVSR IDRVRSLETENAGLRLRITESEEVVSREVS GLRLRITESEEVVSREVSGIKAAYEAELGD R L R S R E 0 2 0 0 0 0 3 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 12 1 1416.7573 P02545;Q3BDU5 P02545 61 72 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 3.7044E-05 132.17 By MS/MS By MS/MS By MS/MS 1 4 3 1.3711 1.3156 34.686 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8692 2.0859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1785 1.2846 46.381 4 0 Median 1.4256 1.2604 14.008 3 0 Median 154370000 58878000 95495000 0 0 0 0 0 0 3115500 816880 2298600 0 0 0 121850000 46071000 75774000 29412000 11990000 17421000 22580 1834;3010 23554 119187;119188;119189;119190;119191;119192;119193;119194 120324;120325;120326;120327;120328;120329;120330;120331;120332;120333;120334;120335 120325 12 LRKEELSEEGYLAK LQTEIKNQLCDLETKLRKEELSEEGYLAKV KLRKEELSEEGYLAKVKSLLNKDLSLENGA K L R A K V 1 1 0 0 0 0 4 1 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 2 1663.8781 P26358;K7EJL0 P26358 68 81 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 5.6937E-09 110.44 By MS/MS By MS/MS By matching 2 2 1 0.96227 1.1483 30.636 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94596 1.1607 1.5188 2 1 Median 0.8631 0.95409 17.144 2 0 Median NaN NaN NaN 0 0 Median 1.9065 1.956 NaN 1 0 Median 89891000 46455000 43436000 0 0 0 0 0 0 76887000 39629000 37258000 11729000 6311300 5417800 0 0 0 1275300 515520 759820 22581 2142 23555 119195;119196;119197;119198;119199 120336;120337;120338;120339;120340;120341 120337 6 LRLDGSDNR VCIATVIGITGARLRLRLDGSDNRNDFWRL TGARLRLRLDGSDNRNDFWRLVDSPDIQPV R L R N R N 0 2 1 2 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 1 1044.5312 Q9UQR0 Q9UQR0 95 103 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.017385 63.48 By matching By MS/MS 1 1 1.1501 1.1817 14.557 2 Median 1.1269 1.0662 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1738 1.3099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1969800 904790 1065100 364270 164500 199770 0 0 0 1605600 740300 865280 0 0 0 0 0 0 0 0 0 22582 4363 23556 119200;119201 120342 120342 1 LRLDSIVIQQGR DNTVEERIVERAEMKLRLDSIVIQQGRLVD EMKLRLDSIVIQQGRLVDQNLNKIGKDEML K L R G R L 0 2 0 1 0 2 0 1 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1396.815 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 625 636 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2;3 1.5918E-06 152.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 3 1.2449 1.3452 24.293 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1009 1.339 0.6605 2 0 Median 1.823 1.7847 13.237 3 2 Median 1.0648 1.1519 17.106 5 0 Median 1.6034 1.4073 6.5936 3 0 Median 168460000 76818000 91638000 0 0 0 0 0 0 73895000 34118000 39777000 6658500 2199500 4459000 75236000 35514000 39722000 12665000 4985800 7679500 22583 1608;643;167 23557 119202;119203;119204;119205;119206;119207;119208;119209;119210;119211;119212;119213;119214 120343;120344;120345;120346;120347;120348;120349;120350;120351;120352;120353;120354;120355;120356;120357;120358;120359 120348 17 LRLEEDKPAVER VAAAEEERRLRQRNRLRLEEDKPAVERCLE RNRLRLEEDKPAVERCLEELVFGDVENDED R L R E R C 1 2 0 1 0 0 3 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 12 2 1453.7889 Q9Y5J1 Q9Y5J1 78 89 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 3 0.00010968 81.709 By MS/MS By MS/MS 1 1 1.0103 1.0066 21.704 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0256 1.1735 NaN 1 0 Median 0.99517 0.86337 NaN 1 0 Median 10952000 6067200 4885300 0 0 0 0 0 0 0 0 0 0 0 0 8619400 4710700 3908700 2333000 1356500 976580 22584 4458 23558 119215;119216 120360;120361 120360 2 LRLEEEQKEEEER LESQREAEWKKEEERLRLEEEQKEEEERKA ERLRLEEEQKEEEERKAREEQAQREHEEYL R L R E R K 0 2 0 0 0 1 7 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1715.8326 Q96HY6;A0A0A0MRX2 Q96HY6 163 175 DDRGK1 DDRGK domain-containing protein 1 yes no 3;4 0.00035514 59.607 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 0.97811 1.0989 37.5 7 Median 0.74433 0.83912 NaN 1 0 Median 1.4752 1.6344 69.014 2 0 Median 0.91532 1.1743 9.382 2 0 Median 1.3582 1.228 21.825 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9543400 4301100 5242300 1054600 628130 426430 3553800 1427400 2126400 3475800 1680300 1795500 1459300 565320 893960 0 0 0 0 0 0 22585 3672 23559 119217;119218;119219;119220;119221;119222;119223 120362;120363;120364;120365;120366;120367;120368;120369 120366 8 LRLEEYEQR ETVAKMYISELKNIRLRLEEYEQRVVKRIQ ELKNIRLRLEEYEQRVVKRIQSLASSRTDR R L R Q R V 0 2 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 1 1234.6306 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1053 1061 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00012695 107.79 By MS/MS 1 1.1739 1.1002 NaN 1 Median NaN NaN NaN 0 0 Median 1.1739 1.1002 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12156000 5536400 6619200 0 0 0 12156000 5536400 6619200 0 0 0 0 0 0 0 0 0 0 0 0 22586 1220 23560 119224 120370 120370 1 LRLEIIDKDSK SPELPSPQAEKRLPKLRLEIIDKDSKTRRL RLPKLRLEIIDKDSKTRRLDIRAPLHPEKV K L R S K T 0 1 0 2 0 0 1 0 0 2 2 2 0 0 0 1 0 0 0 0 0 0 11 2 1328.7664 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 683 693 CLPB Caseinolytic peptidase B protein homolog yes no 3 7.1044E-05 74.21 By MS/MS By MS/MS By MS/MS 1 1 1 1.2203 1.3106 5.9096 3 Median 1.2203 1.321 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96615 1.1881 NaN 1 0 Median 1.2314 1.3106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14676000 6299400 8376500 8737000 3725700 5011300 0 0 0 3780300 1714700 2065600 2158600 859080 1299600 0 0 0 0 0 0 22587 1181 23561 119225;119226;119227 120371;120372;120373;120374 120371 4 LRLESEGSPETLTNLR AEMELRAKEEERLNKLRLESEGSPETLTNL RLESEGSPETLTNLRKGYLFMYNLVQFLGF K L R L R K 0 2 1 0 0 0 3 1 0 0 4 0 0 0 1 2 2 0 0 0 0 0 16 1 1813.9534 Q9P035;H3BS72;H3BPZ1;H3BRL8;H3BMZ1 Q9P035 131 146 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2;3 6.968E-20 140.82 By MS/MS By MS/MS By MS/MS 4 4 1 0.99293 1.0457 11.316 9 Median 0.94872 1.0227 10.275 4 1 Median 1.1218 1.0824 15.309 4 0 Median 0.9515 1.0457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 325620000 153660000 171960000 145290000 71096000 74191000 137130000 63351000 73779000 43201000 19211000 23990000 0 0 0 0 0 0 0 0 0 22588 4200 23562 119228;119229;119230;119231;119232;119233;119234;119235;119236 120375;120376;120377;120378;120379;120380;120381;120382;120383;120384;120385;120386;120387;120388 120381 14 LRLESEGSPETLTNLRK AEMELRAKEEERLNKLRLESEGSPETLTNL LESEGSPETLTNLRKGYLFMYNLVQFLGFS K L R R K G 0 2 1 0 0 0 3 1 0 0 4 1 0 0 1 2 2 0 0 0 0 0 17 2 1942.0484 Q9P035;H3BS72;H3BPZ1;H3BRL8;H3BMZ1 Q9P035 131 147 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 3;4 1.5571E-12 98.507 By MS/MS By matching By MS/MS 2 1 2 0.70584 0.80015 16.122 5 Median 0.73405 0.70813 9.9321 2 0 Median 1.0692 1.031 NaN 1 0 Median 0.70459 0.80157 0.25079 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140150000 78134000 62015000 82927000 46348000 36579000 18176000 7952500 10223000 39046000 23833000 15213000 0 0 0 0 0 0 0 0 0 22589 4200 23563 119237;119238;119239;119240;119241 120389;120390;120391;120392;120393 120393 5 LRLEVNLQAMK LEELEDELQATEDAKLRLEVNLQAMKAQFE EDAKLRLEVNLQAMKAQFERDLQGRDEQSE K L R M K A 1 1 1 0 0 1 1 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 11 1 1313.7489 P35579 P35579 1556 1566 MYH9 Myosin-9 yes yes 2;3 0.0015882 109.42 By MS/MS By MS/MS 1 1 1.1354 1.1023 19.364 2 Median 1.2498 1.264 NaN 1 0 Median 1.0314 0.96121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27250000 12589000 14662000 4038200 1613300 2424900 23212000 10975000 12237000 0 0 0 0 0 0 0 0 0 0 0 0 22590 2244 23564;23565 119242;119243 120394;120395 120395 991 2 LRLEVNMQAMK LEELEDELQATEDAKLRLEVNMQAMKAQFE EDAKLRLEVNMQAMKAQFERDLQTRDEQNE K L R M K A 1 1 1 0 0 1 1 0 0 0 2 1 2 0 0 0 0 0 0 1 0 0 11 1 1331.7054 P35580 P35580 1563 1573 MYH10 Myosin-10 yes yes 3 0.0004134 59.84 By MS/MS By matching 1 1 1.2868 1.2651 8.8954 2 Median 1.1785 1.188 NaN 1 0 Median 1.4052 1.3473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7424200 3122200 4301900 6301800 2726600 3575100 1122400 395590 726800 0 0 0 0 0 0 0 0 0 0 0 0 22591 2245 23566 119244;119245 120396;120397 120396 2 LRLPLDKEPAR IRLQLEACETRTVHRLRLPLDKEPARECAQ TVHRLRLPLDKEPARECAQRIAEQQKAQAE R L R A R E 1 2 0 1 0 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 11 2 1306.7721 Q15149;H0YDN1 Q15149 1144 1154 PLEC Plectin yes no 3 0.00012008 71.153 By MS/MS By MS/MS By MS/MS 1 1 1 0.87003 0.83898 6.5597 3 Median 0.8873 0.85597 NaN 1 0 Median 0.87003 0.83898 NaN 1 0 Median 0.66578 0.75743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19166000 10513000 8653500 4902100 2368900 2533200 11241000 6428800 4812300 3022900 1715000 1308000 0 0 0 0 0 0 0 0 0 22592 2933 23567 119246;119247;119248 120398;120399;120400 120400 2 LRLQAEEVAQQK RELERWQLKANEALRLRLQAEEVAQQKSLA ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE R L R Q K S 2 1 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1411.7783 Q15149 Q15149 1781 1792 PLEC Plectin yes yes 2;3 9.026E-05 126.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1938 1.2777 14.789 8 Median 1.1938 1.2407 5.3476 2 0 Median NaN NaN NaN 0 0 Median 1.0913 1.2633 7.0195 2 0 Median NaN NaN NaN 0 0 Median 1.3615 1.5404 27.636 2 1 Median 1.4379 1.2773 8.7665 2 0 Median 57130000 24263000 32867000 23842000 10646000 13196000 0 0 0 10034000 4356100 5677400 0 0 0 10166000 4094300 6072100 13087000 5166300 7921100 22593 2933 23568 119249;119250;119251;119252;119253;119254;119255;119256 120401;120402;120403;120404;120405;120406;120407;120408;120409;120410;120411 120411 11 LRNDLLNIIR KILKKHMSKDPTTQKLRNDLLNIIREKNLA PTTQKLRNDLLNIIREKNLAHPVIQNFSYE K L R I R E 0 2 2 1 0 0 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1238.7459 H3BR06;Q15554;H3BTA7;U3KQ35;J3KSJ9 H3BR06 112 121 TERF2 Telomeric repeat-binding factor 2 yes no 3 0.0037286 42.336 By MS/MS By matching 2 1 0.99318 1.1083 15.587 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93294 1.0242 11.157 2 0 Median 1.3874 1.2928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4675200 2574300 2100900 0 0 0 0 0 0 4580700 2523600 2057100 94519 50726 43793 0 0 0 0 0 0 22594 1226 23569 119257;119258;119259 120412;120413 120413 2 LRNEKEQELDTLK PLWYLTKEKKDELCRLRNEKEQELDTLKRK CRLRNEKEQELDTLKRKSPSDLWKEDLATF R L R L K R 0 1 1 1 0 1 3 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 13 2 1614.8577 P11388 P11388 1147 1159 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 0.0001831 70.622 By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1.0868 1.3239 26.283 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0839 1.3239 5.8696 3 0 Median 1.6441 1.8402 13.853 2 0 Median 1.0346 1.2163 6.9569 2 0 Median 1.6301 1.6176 55.328 2 0 Median 30219000 13872000 16347000 0 0 0 0 0 0 11527000 5533500 5993900 2161100 859400 1301700 14159000 6459400 7699900 2371000 1019900 1351000 22595 1963 23570 119260;119261;119262;119263;119264;119265;119266;119267;119268 120414;120415;120416;120417;120418;120419;120420 120418 6 LRNEYGPVLHMPTSK VPLDEESHKRKMAIKLRNEYGPVLHMPTSK LRNEYGPVLHMPTSKENLKEKGPQNATDSY K L R S K E 0 1 1 0 0 0 1 1 1 0 2 1 1 0 2 1 1 0 1 1 0 0 15 1 1740.8981 O43660;D6RA26;B7Z982 O43660 48 62 PLRG1 Pleiotropic regulator 1 yes no 3;4 9.7681E-05 53.169 By matching By MS/MS By MS/MS 1 4 3 0.90389 0.9256 22.381 8 Median 1.0503 1.0771 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78245 0.77519 12.61 4 0 Linear 0.98826 0.92737 24.142 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29579000 15888000 13691000 3071300 1279500 1791800 0 0 0 21293000 12389000 8904000 5213900 2218600 2995300 0 0 0 0 0 0 22596 1580 23571;23572 119269;119270;119271;119272;119273;119274;119275;119276 120421;120422;120423;120424;120425 120422 511 5 LRNQLQSVYK ______________________________ AIAMRLRNQLQSVYKMDPLRNEEEVRVKIK R L R Y K M 0 1 1 0 0 2 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 1 1247.6986 Q9BSM1 Q9BSM1 15 24 PCGF1 Polycomb group RING finger protein 1 yes yes 2;3 0.0029225 51.346 By MS/MS By MS/MS By matching 2 2 1 0.8816 0.91195 21.181 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95466 0.9907 11.713 2 0 Median 1.0861 0.96696 36.836 2 1 Median 0.76448 0.80787 NaN 1 0 Median NaN NaN NaN 0 0 Median 17011000 9166700 7844500 0 0 0 0 0 0 11777000 6093600 5683100 1709200 817830 891350 3525300 2255300 1270000 0 0 0 22597 3819 23573 119277;119278;119279;119280;119281 120426;120427;120428;120429;120430 120427 5 LRNWASGHDLQGK ______________________________ QRLRNWASGHDLQGKLQLRYQEISKRTQPP R L R G K L 1 1 1 1 0 1 0 2 1 0 2 1 0 0 0 1 0 1 0 0 0 0 13 1 1480.7535 O95182;M0R0N0;M0R1K9 O95182 11 23 NDUFA7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 yes no 3 0.00046069 53.754 By matching By MS/MS By matching 2 1 1 1.0253 1.0289 27.31 4 Median 1.0253 1.011 21.16 2 0 Median 1.7749 1.5671 NaN 1 0 Median 0.86061 0.90162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8296800 3194000 5102800 2714100 1234200 1479900 4695400 1549500 3145900 887330 410310 477020 0 0 0 0 0 0 0 0 0 22598 1752 23574 119282;119283;119284;119285 120431 120431 1 LRNWQWWR TAMKVLQRNCAAYLKLRNWQWWRLFTKVKP NCAAYLKLRNWQWWRLFTKVKPLLQVSRQE K L R W R L 0 2 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 3 0 0 0 0 8 1 1243.6363 P35579 P35579 822 829 MYH9 Myosin-9 no no 3 0.0025163 65.252 By MS/MS 1 1.366 1.4609 NaN 1 Median 1.366 1.4609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2791200 1233300 1557900 2791200 1233300 1557900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22599 2244 23575 119286 120432;120433 120432 2 LRPAAAGLPEAR AWRRGPAAPPGDKGRLRPAAAGLPEARKLL KGRLRPAAAGLPEARKLLGLAYPERRRLAA R L R A R K 4 2 0 0 0 0 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 12 1 1220.699 Q9NRK6 Q9NRK6 147 158 ABCB10 ATP-binding cassette sub-family B member 10, mitochondrial yes yes 3 0.0532 42.809 By MS/MS By MS/MS 1 2 0.90185 0.9174 5.7626 3 Median 0.86929 0.94466 NaN 1 0 Median 0.90515 0.88059 5.7909 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8109400 4146300 3963000 1599300 765680 833640 6510000 3380600 3129400 0 0 0 0 0 0 0 0 0 0 0 0 22600 4083 23576 119287;119288;119289 120434;120435 120435 1 LRPEDSFMSVYPMQTEHHQTPLDYNR QTPQLTSTIMREPKRLRPEDSFMSVYPMQT PMQTEHHQTPLDYNRRGTSLMEDDEEPIVE R L R N R R 0 2 1 2 0 2 2 0 2 0 2 0 2 1 3 2 2 0 2 1 0 0 26 1 3190.4601 Q8N3U4 Q8N3U4 1132 1157 STAG2 Cohesin subunit SA-2 yes yes 4 3.1427E-25 74.748 By MS/MS 1 0.3756 0.45681 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3756 0.45681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8153500 4993700 3159800 0 0 0 0 0 0 8153500 4993700 3159800 0 0 0 0 0 0 0 0 0 22601 3369 23577 119290 120436 120436 1 LRPEDSFMSVYPMQTEHHQTPLDYNRR QTPQLTSTIMREPKRLRPEDSFMSVYPMQT MQTEHHQTPLDYNRRGTSLMEDDEEPIVED R L R R R G 0 3 1 2 0 2 2 0 2 0 2 0 2 1 3 2 2 0 2 1 0 0 27 2 3346.5612 Q8N3U4 Q8N3U4 1132 1158 STAG2 Cohesin subunit SA-2 yes yes 4 0.067933 7.041 By MS/MS 1 0.47568 0.54279 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47568 0.54279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9009500 5336100 3673400 0 0 0 0 0 0 9009500 5336100 3673400 0 0 0 0 0 0 0 0 0 22602 3369 23578 119291 120437 120437 1 LRPESALAQAQK DQVEEAVADFDECIRLRPESALAQAQKCFA CIRLRPESALAQAQKCFALYRQAYTGNNSS R L R Q K C 3 1 0 0 0 2 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 1 1310.7306 O94826 O94826 430 441 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2;3 2.0251E-05 123.51 By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1.0102 0.95469 7.1908 8 Median 0.87328 0.87575 1.8203 2 0 Median 1.0481 0.95469 0.52508 2 0 Median 0.95941 1.0188 4.9397 2 0 Median 1.0871 0.99677 8.101 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62223000 30843000 31380000 27152000 14221000 12930000 25509000 11893000 13616000 6285900 3196300 3089500 3276600 1532200 1744400 0 0 0 0 0 0 22603 1728 23579 119292;119293;119294;119295;119296;119297;119298;119299 120438;120439;120440;120441;120442;120443;120444;120445 120442 8 LRPGALGGAADVEDTK LLDGLAQAQAEGRCRLRPGALGGAADVEDT RPGALGGAADVEDTKEGEDEAKRYQEFQNR R L R T K E 3 1 0 2 0 0 1 3 0 0 2 1 0 0 1 0 1 0 0 1 0 0 16 1 1568.8158 Q01970 Q01970 1007 1022 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3 3.8806E-07 91.616 By MS/MS 1 1.0941 1.0515 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0941 1.0515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6744500 3224300 3520200 0 0 0 0 0 0 0 0 0 6744500 3224300 3520200 0 0 0 0 0 0 22604 2695 23580 119300 120446;120447 120446 2 LRPGFMEDR NQGGSSWEAPYSRSKLRPGFMEDRGRENYS PYSRSKLRPGFMEDRGRENYSSYSSFSSPH K L R D R G 0 2 0 1 0 0 1 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 9 1 1119.5495 Q5BKZ1 Q5BKZ1 141 149 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.0071323 80.755 By MS/MS 2 0.9659 1.0427 5.1023 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9659 1.0427 5.1023 2 0 Median NaN NaN NaN 0 0 Median 37912000 18548000 19364000 0 0 0 0 0 0 0 0 0 0 0 0 37912000 18548000 19364000 0 0 0 22605 3042 23581 119301;119302 120448 120448 1 LRPGSLVPPLETEKLPR TPPVVSLTPKLRSTRLRPGSLVPPLETEKL PGSLVPPLETEKLPRKRAGAPVGGSPGLAK R L R P R K 0 2 0 0 0 0 2 1 0 0 4 1 0 0 4 1 1 0 0 1 0 0 17 2 1901.1098 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 3122 3138 SRCAP Helicase SRCAP yes no 4 0.0065172 32.181 By MS/MS 1 0.57281 0.65165 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57281 0.65165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3722500 2367200 1355300 0 0 0 0 0 0 3722500 2367200 1355300 0 0 0 0 0 0 0 0 0 22606 3199 23582 119303 120449 120449 0 LRPIAVIK VNTCHDAGISKKAIKLRPIAVIKG______ ISKKAIKLRPIAVIKG______________ K L R I K G 1 1 0 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 8 1 908.61712 Q9Y3I0 Q9Y3I0 497 504 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.023413 78.616 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0531 1.0211 17.993 5 Median 0.84055 0.85292 NaN 1 0 Median 1.1177 1.0211 NaN 1 0 Median 1.0531 1.1776 NaN 1 0 Median 1.1052 1.0371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94535 0.74519 NaN 1 0 Median 27121000 13239000 13882000 1327300 659810 667490 2785300 1245900 1539400 5359900 2702300 2657600 17422000 8522700 8898900 0 0 0 226980 108320 118660 22607 4430 23583 119304;119305;119306;119307;119308 120450;120451 120451 2 LRPIAVIKG VNTCHDAGISKKAIKLRPIAVIKG______ SKKAIKLRPIAVIKG_______________ K L R K G - 1 1 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 9 2 965.63859 Q9Y3I0 Q9Y3I0 497 505 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.013118 64.757 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.9777 1.0303 17.319 6 Median 1.0292 1.0268 NaN 1 0 Median 0.7988 0.70526 NaN 1 0 Median 0.92881 1.043 NaN 1 0 Median 1.1017 1.0338 NaN 1 0 Median 0.89731 0.93188 NaN 1 0 Median 1.2887 1.1673 NaN 1 0 Median 37141000 18884000 18257000 7546200 3998100 3548100 1395700 729650 666080 14051000 7198900 6852400 8951000 4359600 4591400 2110900 1174000 936840 3085600 1423700 1661900 22608 4430 23584 119309;119310;119311;119312;119313;119314 120452;120453 120453 2 LRPITAQLK KFLADMRRPSSVLRRLRPITAQLKIDISPA SSVLRRLRPITAQLKIDISPAPENPHYCLT R L R L K I 1 1 0 0 0 1 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 9 1 1038.655 Q96N67;A0A1B0GUE9 Q96N67 502 510 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.035865 51.066 By MS/MS 1 0.94212 0.87084 NaN 1 Median NaN NaN NaN 0 0 Median 0.94212 0.87084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55545000 29158000 26387000 0 0 0 55545000 29158000 26387000 0 0 0 0 0 0 0 0 0 0 0 0 22609 3707 23585 119315 120454 120454 1 LRPLYDIPYMFEAR PPRLEGENTQDKNKKLRPLYDIPYMFEARE KLRPLYDIPYMFEAREFLRKKLIGKKVNVT K L R A R E 1 2 0 1 0 0 1 0 0 1 2 0 1 1 2 0 0 0 2 0 0 0 14 1 1782.9127 Q7KZF4 Q7KZF4 390 403 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 3.4687E-07 100.93 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 0.92154 0.95027 16.296 10 Median 0.85343 0.91656 26.71 4 0 Median 1.0034 0.96741 3.0084 2 1 Median 0.8058 0.93109 6.9988 2 0 Median 0.99014 0.96934 2.3283 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40002000 20806000 19195000 22612000 12064000 10548000 4381700 2093100 2288700 11457000 5900100 5556600 1551700 749030 802640 0 0 0 0 0 0 22610 3214 23586 119316;119317;119318;119319;119320;119321;119322;119323;119324;119325 120455;120456;120457;120458;120459;120460;120461;120462 120457 8 LRPLYNHPAGPR YHRLLDKVELMLPEKLRPLYNHPAGPRTVF PEKLRPLYNHPAGPRTVFFWAPIMKWGLVC K L R P R T 1 2 1 0 0 0 0 1 1 0 2 0 0 0 3 0 0 0 1 0 0 0 12 1 1389.763 Q5R3B4;O95563 Q5R3B4 28 39 MPC2 Mitochondrial pyruvate carrier 2 yes no 3 0.00016654 76.332 By MS/MS By MS/MS By MS/MS 3 3 1 0.70951 0.7496 10.417 7 Median 0.65174 0.65026 10.249 3 0 Median 0.86085 0.75421 8.383 3 0 Median 0.68418 0.74301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47652000 25556000 22096000 10323000 6329500 3993500 35259000 17823000 17436000 2069600 1403000 666540 0 0 0 0 0 0 0 0 0 22611 1779 23587 119326;119327;119328;119329;119330;119331;119332 120463;120464;120465;120466;120467;120468;120469;120470;120471;120472 120464 10 LRPPPDNQDAYR VQSLLLKHCAPVLAKLRPPPDNQDAYRAEF LAKLRPPPDNQDAYRAEFGSLGPLLCSQVV K L R Y R A 1 2 1 2 0 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 12 1 1440.711 J3KR72;P49848 J3KR72 495 506 TAF6 Transcription initiation factor TFIID subunit 6 yes no 3 0.0043343 35.677 By MS/MS 1 0.63976 0.71392 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63976 0.71392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2158200 1254300 903920 0 0 0 0 0 0 2158200 1254300 903920 0 0 0 0 0 0 0 0 0 22612 1323 23588 119333 120473 120473 1 LRPQTYDLQESNVQLK TFETEEASHHEACVRLRPQTYDLQESNVQL RPQTYDLQESNVQLKLTIVDAVSGEGVSCL R L R L K L 0 1 1 1 0 3 1 0 0 0 3 1 0 0 1 1 1 0 1 1 0 0 16 1 1931.0112 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599;C9JV02;C9J4G8;A0A0A0MRP8 A0A087X142 83 98 SEPT8 Septin-8 yes no 2;3 3.911E-10 154.69 By MS/MS By MS/MS By MS/MS 1 5 5 0.82766 0.85166 13.301 11 Median 0.68416 0.68232 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73223 0.78224 12.337 5 0 Median 0.96617 0.89825 6.9837 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 304550000 163300000 141250000 8947700 4774900 4172800 0 0 0 193490000 107560000 85928000 102110000 50959000 51150000 0 0 0 0 0 0 22613 118 23589 119334;119335;119336;119337;119338;119339;119340;119341;119342;119343;119344 120474;120475;120476;120477;120478;120479;120480;120481;120482;120483;120484;120485;120486;120487;120488;120489;120490 120488 17 LRPVDQLR KFVLLSAQGSLMFHKLRPVDQLRHLLVSNV GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE K L R L R H 0 2 0 1 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 1 995.58761 O75694;E9PF10 O75694 514 521 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.029069 72.485 By MS/MS By MS/MS By matching 1 1 1 1.2064 1.3992 15.307 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2064 1.4672 NaN 1 0 Median 1.1263 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5478 1.3992 NaN 1 0 Median 7974700 3323700 4651100 0 0 0 0 0 0 4850400 1980700 2869700 1951700 934570 1017200 0 0 0 1172600 408390 764240 22614 1692 23590 119345;119346;119347 120491;120492;120493;120494 120491 4 LRPVPPYQHEEIIGK HPAHKVAMILDPQQKLRPVPPYQHEEIIGK LRPVPPYQHEEIIGKVCELINEVKESWAEE K L R G K V 0 1 0 0 0 1 2 1 1 2 1 1 0 0 3 0 0 0 1 1 0 0 15 1 1774.973 Q5T7W0 Q5T7W0 814 828 ZNF618 Zinc finger protein 618 yes yes 3;4 0.0002221 47.037 By MS/MS 2 0.56751 0.64473 24.616 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56751 0.64473 24.616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6727300 4185700 2541600 0 0 0 0 0 0 6727300 4185700 2541600 0 0 0 0 0 0 0 0 0 22615 3096 23591 119348;119349 120495;120496;120497;120498 120495 4 LRQDFEEVTTQNEK ENKELAQNRLCELEKLRQDFEEVTTQNEKL KLRQDFEEVTTQNEKLKVELRSAVEQVVKE K L R E K L 0 1 1 1 0 2 3 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 14 1 1735.8377 Q5VTR2 Q5VTR2 349 362 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2;3 3.2414E-05 87.363 By matching By matching By MS/MS By MS/MS 2 1 2 1 1.0275 1.0773 13.04 6 Median 0.90267 0.937 19.85 2 0 Median 1.1431 1.0765 NaN 1 0 Median 0.94702 1.0748 9.7075 2 0 Median 1.2023 1.1555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27288000 12666000 14623000 4963900 2817400 2146500 3524800 1570500 1954300 12770000 5776100 6994400 6029100 2501600 3527500 0 0 0 0 0 0 22616 3112 23592 119350;119351;119352;119353;119354;119355 120499;120500;120501;120502 120502 4 LRQEEPQSLQAAVR EVLDMHGFLRQALCRLRQEEPQSLQAAVRT RLRQEEPQSLQAAVRTDGFDEFKVRLQDLS R L R V R T 2 2 0 0 0 3 2 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 14 1 1623.8693 H3BT57;P29590;H3BVD2;H3BT29;H3BUJ5 H3BT57 359 372 PML Protein PML yes no 3 0.00028081 57.136 By MS/MS By matching 1 1 0.84727 0.84013 48.902 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0927 1.1872 NaN 1 0 Median 0.65699 0.59453 NaN 1 0 Median 9709500 4172600 5536800 0 0 0 0 0 0 0 0 0 0 0 0 6216400 2261300 3955100 3493100 1911300 1581800 22617 1235 23593 119356;119357 120503 120503 1 LRQENIELGEK EIQAQLEQHDIHNAKLRQENIELGEKLKKL HNAKLRQENIELGEKLKKLIEQYALREEHI K L R E K L 0 1 1 0 0 1 3 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1327.7096 Q9NUQ3 Q9NUQ3 265 275 TXLNG Gamma-taxilin yes yes 3 0.0037735 38.021 By MS/MS 1 1.4337 1.3146 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4337 1.3146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1116000 475920 640040 0 0 0 0 0 0 0 0 0 1116000 475920 640040 0 0 0 0 0 0 22618 4118 23594 119358 120504 120504 1 LRQENMELAER DIQLQMEQHNERNSKLRQENMELAERLKKL RNSKLRQENMELAERLKKLIEQYELREEHI K L R E R L 1 2 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 11 1 1387.6878 P40222 P40222 298 308 TXLNA Alpha-taxilin yes yes 2;3 5.1436E-05 119.16 By MS/MS By MS/MS By MS/MS 2 3 4 1.1858 1.0824 14.102 9 Median 1.1666 1.1961 15.848 2 0 Median NaN NaN NaN 0 0 Median 1.2311 1.3738 16.417 3 0 Median 1.1593 1.0691 6.1312 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37722000 16479000 21243000 8127100 3776300 4350800 0 0 0 15770000 6519000 9250900 13825000 6183500 7641000 0 0 0 0 0 0 22619 2284 23595;23596 119359;119360;119361;119362;119363;119364;119365;119366;119367 120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515;120516;120517 120506 1039 13 LRQHHDEYEDEIR ICSIKSNRHKDGFHRLRQHHDEYEDEIRMM HRLRQHHDEYEDEIRMMSTGSKKSLLSHEF R L R I R M 0 2 0 2 0 1 3 0 2 1 1 0 0 0 0 0 0 0 1 0 0 0 13 1 1738.8023 O75976 O75976 1337 1349 CPD Carboxypeptidase D yes yes 3 0.07142 12.165 By MS/MS 1 1.1802 1.2621 NaN 1 Median 1.1802 1.2621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1031100 486280 544840 1031100 486280 544840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22620 1714 23597 119368 120518 120518 1 LRQIFNGTFVK NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA QLLRLRQIFNGTFVKLNKASINMLRIVEPY R L R V K L 0 1 1 0 0 1 0 1 0 1 1 1 0 2 0 0 1 0 0 1 0 0 11 1 1321.7507 P18124;A8MUD9;C9JIJ5;C9JZ88 P18124 114 124 RPL7 60S ribosomal protein L7 yes no 2;3 5.7187E-05 93.258 By MS/MS By matching By MS/MS 2 4 2 1.2398 1.3131 15.766 8 Median 1.1952 1.2072 2.158 2 0 Median 1.4706 1.3883 23.471 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2376 1.3131 3.1503 2 0 Median NaN NaN NaN 0 0 Median 93426000 42824000 50601000 47605000 21712000 25893000 3267200 1783200 1484000 0 0 0 0 0 0 42553000 19329000 23225000 0 0 0 22621 2056 23598 119369;119370;119371;119372;119373;119374;119375;119376 120519;120520;120521;120522;120523 120520 5 LRQLAEEDLAQQR EEAARLSVAAQEAARLRQLAEEDLAQQRAL ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R L R Q R A 2 2 0 1 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 1 1568.8271 Q15149 Q15149 2430 2442 PLEC Plectin yes yes 2;3 1.0963E-11 179.35 By MS/MS By MS/MS By MS/MS 2 1 1 1.148 1.2447 19.19 4 Median 1.2974 1.4099 25.421 2 0 Median NaN NaN NaN 0 0 Median 0.98761 1.0854 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2159 1.3153 NaN 1 0 Median NaN NaN NaN 0 0 Median 40501000 17612000 22889000 27131000 11870000 15261000 0 0 0 6969100 3527100 3442000 0 0 0 6400700 2214900 4185800 0 0 0 22622 2933 23599 119377;119378;119379;119380 120524;120525;120526;120527;120528 120527 5 LRQLQQLQQLR EAELELQKQLEKGRRLRQLQQLQQLRDSGE KGRRLRQLQQLQQLRDSGEKVVEIVKKLES R L R L R D 0 2 0 0 0 5 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 11 1 1422.8419 O43290 O43290 509 519 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.064336 41.164 By MS/MS 1 1.2505 1.3587 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2505 1.3587 NaN 1 0 Median NaN NaN NaN 0 0 Median 1554600 711710 842880 0 0 0 0 0 0 0 0 0 0 0 0 1554600 711710 842880 0 0 0 22623 1563 23600 119381 120529 120529 0 LRQNLDALLNQLK DQMKEQPWVSVQPRKLRQNLDALLNQLKSF RKLRQNLDALLNQLKSFPARLRQYASYEFV K L R L K S 1 1 2 1 0 2 0 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 13 1 1537.894 Q14204 Q14204 1359 1371 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.06226 13.717 By matching By MS/MS 1 1 1.0974 1.0763 16.2 2 Median 0.94128 0.95977 NaN 1 0 Median 1.2795 1.2069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5095500 2198900 2896600 1805400 750650 1054800 3290100 1448300 1841800 0 0 0 0 0 0 0 0 0 0 0 0 22624 2865 23601 119382;119383 120530 120530 1 LRQPFFQK QASEEILKVEQKYNKLRQPFFQKRSELIAK VEQKYNKLRQPFFQKRSELIAKIPNFWVTT K L R Q K R 0 1 0 0 0 2 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 8 1 1062.5974 Q01105;A0A0C4DFV9;A0A087X027;P0DME0 Q01105 76 83 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.010833 114.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 0.94155 0.91674 30.969 8 Median 0.72587 0.75869 25.346 2 0 Median 0.94155 0.85887 10.637 2 0 Median 0.99365 1.0758 NaN 1 0 Median 0.76204 0.6661 63.147 2 0 Median NaN NaN NaN 0 0 Median 1.0593 0.94802 NaN 1 0 Median 249500000 135740000 113760000 175670000 98681000 76986000 22925000 11157000 11768000 22566000 10143000 12423000 24876000 14084000 10792000 0 0 0 3465000 1677500 1787500 22625 2683 23602 119384;119385;119386;119387;119388;119389;119390;119391 120531;120532;120533;120534;120535;120536;120537;120538;120539;120540 120536 10 LRQPPSISAEVEK KIDQILESLERIVERLRQPPSISAEVEKIK ERLRQPPSISAEVEKIKEQISENKNVSVDM R L R E K I 1 1 0 0 0 1 2 0 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 1 1452.7936 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3982 3994 DST Dystonin yes no 3 1.2351E-05 90.759 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.65776 0.66425 3.5348 4 Median 0.63444 0.65513 NaN 1 0 Median 0.68194 0.63119 NaN 1 0 Median 0.59106 0.6842 NaN 1 0 Median 0.72304 0.67349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25476000 14655000 10822000 6714200 4125600 2588600 12746000 6981100 5765200 4887800 2867400 2020500 1127900 680520 447410 0 0 0 0 0 0 22626 934 23603 119392;119393;119394;119395 120541;120542;120543;120544 120544 4 LRQQDLDGELR TSEENYQALDADFRKLRQQDLDGELRSEKE DFRKLRQQDLDGELRSEKEGRDRKKDKQHL K L R L R S 0 2 0 2 0 2 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 1 1341.7001 Q99459 Q99459 242 252 CDC5L Cell division cycle 5-like protein yes yes 3 5.7087E-05 78.342 By MS/MS 1 0.99146 1.1456 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99146 1.1456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4816700 2308000 2508800 0 0 0 0 0 0 4816700 2308000 2508800 0 0 0 0 0 0 0 0 0 22627 3745 23604 119396 120545 120545 1 LRQYASYEFVQR NLDALLNQLKSFPARLRQYASYEFVQRLLK PARLRQYASYEFVQRLLKGYMKINMLVIEL R L R Q R L 1 2 0 0 0 2 1 0 0 0 1 0 0 1 0 1 0 0 2 1 0 0 12 1 1558.7892 Q14204 Q14204 1377 1388 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 2.1131E-07 117.86 By MS/MS 2 2.0431 2.2454 2.1683 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0431 2.2454 2.1683 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44229000 13545000 30684000 0 0 0 0 0 0 44229000 13545000 30684000 0 0 0 0 0 0 0 0 0 22628 2865 23605 119397;119398 120546;120547 120546 2 LRSDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK K L R M K K 2 1 0 2 0 0 1 1 0 0 2 1 1 0 0 2 1 0 0 0 0 0 14 1 1492.7192 Q9NR30 Q9NR30 5 18 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0009723 48.741 By MS/MS By MS/MS By MS/MS 2 1 1 1.3279 1.3972 11.217 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3279 1.5088 10.395 2 1 Median 1.4557 1.3925 NaN 1 0 Median 1.1172 1.2346 NaN 1 0 Median NaN NaN NaN 0 0 Median 12459000 5558300 6900600 0 0 0 0 0 0 8760800 3793400 4967400 889780 345300 544480 2808300 1419500 1388800 0 0 0 22629 4076 23606 119399;119400;119401;119402 120548;120549;120550;120551 120550 4 LRSDLDEKETER EAKKQIEDLNMTLEKLRSDLDEKETERSDM LEKLRSDLDEKETERSDMKETIFELEDEVE K L R E R S 0 2 0 2 0 0 3 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 2 1489.7372 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 691 702 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 3 0.010206 27.862 By matching By MS/MS By MS/MS 1 2 1 0.91273 0.99139 26.766 4 Median 1.3208 1.4225 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71783 0.82674 5.2636 2 0 Median 1.1423 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2546800 1381600 1165200 584830 278900 305930 0 0 0 1553500 897810 655730 408430 204900 203540 0 0 0 0 0 0 22630 469 23607 119403;119404;119405;119406 120552;120553 120552 2 LRSEIDNVK NSKIEISELNRVIQRLRSEIDNVKKQISNL NRVIQRLRSEIDNVKKQISNLQQSISDAEQ R L R V K K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 P04264;CON__P04264 P04264 408 416 KRT1 Keratin, type II cytoskeletal 1 no no 2 0.0016158 110.87 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.027323 0.025478 77.989 6 Median NaN NaN NaN 0 0 Median 0.027323 0.025478 9.0677 2 2 Median NaN NaN NaN 0 0 Median 0.013585 0.012656 24.988 2 2 Median NaN NaN NaN 0 0 Median 0.070566 0.063461 59.656 2 2 Median 18087000 17571000 515790 0 0 0 7341700 7147400 194230 0 0 0 3472700 3417000 55717 1438900 1438900 0 5833700 5567900 265840 + 22631 1848 23608 119407;119408;119409;119410;119411;119412;119413 120554;120555;120556;120557;120558;120559;120560 120558 7 LRSEIDNVKK NSKIEISELNRVIQRLRSEIDNVKKQISNL RVIQRLRSEIDNVKKQISNLQQSISDAEQR R L R K K Q 0 1 1 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 0 1 0 0 10 2 1200.6826 P04264;CON__P04264 P04264 408 417 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 2.7614E-17 155.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 1 4 1 3 0.0043967 0.0044195 103.9 17 Median 0.0050795 0.0056493 41.419 4 4 Median 0.014385 0.013854 67.111 5 5 Median 0.0073171 0.0091155 NaN 1 1 Median 0.0034279 0.0036675 64.604 3 3 Median 0.0021641 0.0025442 NaN 1 1 Median 0.0012599 0.0012093 84.079 3 3 Median 204840000 204050000 796920 19057000 18972000 85040 42095000 41647000 447800 1725500 1708500 17064 43294000 43263000 31664 47932000 47847000 85201 50741000 50611000 130150 + 22632 1848 23609 119414;119415;119416;119417;119418;119419;119420;119421;119422;119423;119424;119425;119426;119427;119428;119429;119430;119431;119432;119433 120561;120562;120563;120564;120565;120566;120567;120568;120569;120570;120571;120572;120573;120574;120575;120576;120577;120578;120579;120580;120581 120569 21 LRSEMIEAIR VHKVFLDFFTYAPPKLRSEMIEAIREAVVY YAPPKLRSEMIEAIREAVVYLAHTHDGARV K L R I R E 1 2 0 0 0 0 2 0 0 2 1 0 1 0 0 1 0 0 0 0 0 0 10 1 1216.6598 Q15397 Q15397 343 352 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.00015714 91.095 By MS/MS 2 1.3725 1.4828 4.2043 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3725 1.4828 4.2043 2 0 Median NaN NaN NaN 0 0 Median 10341000 3881400 6459900 0 0 0 0 0 0 0 0 0 0 0 0 10341000 3881400 6459900 0 0 0 22633 2947 23610 119434;119435 120582;120583;120584 120583 3 LRTEVIQLEDTLAQVR QVELIERDEVSLHKKLRTEVIQLEDTLAQV RTEVIQLEDTLAQVRKEYEMLRIEFEQTLA K L R V R K 1 2 0 1 0 2 2 0 0 1 3 0 0 0 0 0 2 0 0 2 0 0 16 1 1883.0476 O75150;H3BP71;Q5VTR2 Q5VTR2 434 449 RNF40;RNF20 E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A no no 3 4.2191E-05 52.254 By matching By MS/MS 1 1 1.7435 2.0267 51.822 2 Median 2.6315 2.9237 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1552 1.4049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3857900 1593500 2264400 1149000 288370 860630 0 0 0 2708900 1305200 1403700 0 0 0 0 0 0 0 0 0 22634 3112;1648 23611 119436;119437 120585;120586 120585 2 LRVDFADTEHR WTHMRGFPLGGPDRRLRVDFADTEHRYQQQ PDRRLRVDFADTEHRYQQQYLQPLPLTHYE R L R H R Y 1 2 0 2 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 11 1 1357.6739 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 478 488 RBM15 Putative RNA-binding protein 15 yes no 3 4.4406E-05 85.288 By MS/MS By MS/MS 1 1 1.1578 1.2314 3.886 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0954 1.2657 NaN 1 0 Median 1.2237 1.198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6823900 3037500 3786300 0 0 0 0 0 0 4748200 2007700 2740500 2075700 1029800 1045900 0 0 0 0 0 0 22635 60 23612 119438;119439 120587;120588 120588 2 LRVDIRPQLLK SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ YYPKLRVDIRPQLLKNALQRAVERGQLEQI K L R L K N 0 2 0 1 0 1 0 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 11 2 1349.8507 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 292 302 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 6.5042E-05 74.841 By MS/MS By matching 3 1 0.70581 0.81533 14.586 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63529 0.72468 14.584 3 0 Median 1.0593 0.91825 NaN 1 0 Median 14102000 7666000 6435900 0 0 0 0 0 0 0 0 0 0 0 0 13929000 7595400 6334100 172490 70656 101830 22636 3075 23613 119440;119441;119442;119443 120589;120590 120590 2 LRVDPVNFK LPGALSELSDLHAHKLRVDPVNFKLLSHSL DLHAHKLRVDPVNFKLLSHSLLVTLASHLP K L R F K L 0 1 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 9 1 1086.6186 A0A2R8Y7C0;P69905;G3V1N2;CON__P01966 CON__P01966 92 100 HBA1;HBA2 Hemoglobin subunit alpha no no 2 3.6199E-07 136.75 By MS/MS By MS/MS 1 2 0.012504 0.013214 60.791 2 Median 0.0087675 0.0085973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.017834 0.020311 NaN 1 1 Median NaN NaN NaN 0 0 Median 51180000 50785000 394470 27291000 27079000 212380 0 0 0 0 0 0 0 0 0 23889000 23707000 182100 0 0 0 + 22637 738;380 23614 119444;119445;119446 120591;120592;120593 120593 3 LRVDYSGGFEPFSVLR ERLGNSHQPEKPLVRLRVDYSGGFEPFSVL RVDYSGGFEPFSVLRFSQKFVDRVANPKDI R L R L R F 0 2 0 1 0 0 1 2 0 0 2 0 0 2 1 2 0 0 1 2 0 0 16 1 1840.9472 P49959;F8W7U8 P49959 365 380 MRE11A Double-strand break repair protein MRE11A yes no 3 0.0062064 25.866 By matching By matching By MS/MS By matching By MS/MS 1 1 1 1 1 0.92457 1.0046 71.036 5 Median 1.0957 1.0998 NaN 1 0 Median 0.22315 0.2089 NaN 1 0 Median 1.0018 1.1179 NaN 1 0 Median 0.89977 0.76274 NaN 1 0 Median 0.92457 1.0046 NaN 1 0 Median NaN NaN NaN 0 0 Median 9476700 5062000 4414600 2415800 1067800 1348000 2266800 1804600 462140 2950700 1370400 1580200 159430 81198 78232 1684000 737980 946000 0 0 0 22638 2407 23615 119447;119448;119449;119450;119451 120594;120595;120596 120594 3 LRVEFPR DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG GYDYDGYRLRVEFPRSGRGTGRGGGGGGGG R L R P R S 0 2 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 1 915.52904 J3KTL2;Q07955;Q13242;S4R3G0 J3KTL2 84 90 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 2 0.0017668 143.85 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 3 3 0.97823 0.99597 11.291 11 Median 0.9254 0.99626 NaN 1 0 Median 1.082 0.99597 NaN 1 0 Median 0.93868 0.9765 5.5097 2 1 Median 1.285 1.0792 NaN 1 0 Median 0.97823 1.0609 14.391 3 1 Plateau 1.131 1.0075 16.185 3 0 Plateau 275210000 137770000 137430000 19438000 9956000 9481700 4654500 2334200 2320300 43639000 22231000 21409000 1387900 511370 876580 183460000 92330000 91134000 22626000 10413000 12213000 22639 1337;2799 23616 119452;119453;119454;119455;119456;119457;119458;119459;119460;119461;119462 120597;120598;120599;120600;120601;120602;120603;120604;120605 120601 9 LRVELAEK AQVQELHAKVSEGDRLRVELAEKASKLQNE KVSEGDRLRVELAEKASKLQNELDNVSTLL R L R E K A 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 1 956.56548 P35580 P35580 1274 1281 MYH10 Myosin-10 yes yes 2 0.016695 90.709 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.3317 1.254 44.586 5 Median 0.90782 0.92566 NaN 1 0 Median 1.3317 1.254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42983 0.48592 NaN 1 0 Median 1.57 1.3845 8.177 2 0 Median 17412000 7806400 9606000 2380900 1028100 1352900 7644900 3091200 4553700 0 0 0 0 0 0 4206200 2501100 1705100 3180400 1186100 1994300 22640 2245 23617 119463;119464;119465;119466;119467 120606;120607;120608 120608 3 LRYHDEADQSALQR KRKKKGEFPGEKSKRLRYHDEADQSALQRM RLRYHDEADQSALQRMTRLRVTWSMQEDGL R L R Q R M 2 2 0 2 0 2 1 0 1 0 2 0 0 0 0 1 0 0 1 0 0 0 14 1 1700.823 Q12789;H3BRD0 Q12789 1244 1257 GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 0.0030586 47.532 By MS/MS 2 0.81533 1.03 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81533 1.03 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2789300 1448600 1340600 0 0 0 0 0 0 2789300 1448600 1340600 0 0 0 0 0 0 0 0 0 22641 2758 23618 119468;119469 120609;120610 120610 2 LRYPINEEALEK LISYYEKHPLYRKMKLRYPINEEALEKIGT KMKLRYPINEEALEKIGTAEPDYGALYEGR K L R E K I 1 1 1 0 0 0 3 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 12 1 1473.7827 P19174 P19174 752 763 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 3 0.00020238 64.121 By MS/MS 2 0.7783 0.79673 15.887 2 Median 0.7783 0.79673 15.887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10196000 5384600 4811300 10196000 5384600 4811300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22642 2062 23619 119470;119471 120611;120612 120612 2 LSAAEDPLVQSLR CRQVYLPMSYCYAVRLSAAEDPLVQSLRQ_ VRLSAAEDPLVQSLRQ______________ R L S L R Q 2 1 0 1 0 1 1 0 0 0 3 0 0 0 1 2 0 0 0 1 0 0 13 0 1397.7514 C9J315;P48449;A0A0G2JS81;A0A0G2JQD0 C9J315 249 261 LSS Lanosterol synthase yes no 2 0.0033221 60.434 By MS/MS 2 0.84598 0.82136 NaN 1 Median 0.84598 0.82136 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3365100 2037800 1327400 3365100 2037800 1327400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22643 672 23620 119472;119473 120613;120614 120614 2 LSAAIVLK TPMATRLLLCEHAEKLSAAIVLKNHHSRLS LCEHAEKLSAAIVLKNHHSRLSDLVNTAIL K L S L K N 2 0 0 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 813.53239 Q8WUM0 Q8WUM0 647 654 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.0035981 86.472 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 2 1.2975 1.1492 19.168 9 Median 1.2975 1.2552 NaN 1 0 Median 1.5562 1.3419 25.843 2 0 Median 1.1025 1.1773 14.368 2 0 Median 1.2446 1.0756 NaN 1 0 Median 1.7927 1.8462 NaN 1 0 Median 1.3755 1.1448 0.53953 2 0 Median 30871000 13288000 17582000 1691800 652000 1039800 2556000 979360 1576700 16452000 7343300 9108600 4981500 2152300 2829200 1866800 765940 1100800 3322600 1395500 1927200 22644 3492 23621 119474;119475;119476;119477;119478;119479;119480;119481;119482 120615;120616;120617;120618 120615 4 LSAAVTEAFVR SSLDWDRACFTMDPKLSAAVTEAFVRLHEE MDPKLSAAVTEAFVRLHEEGIIYRSTRLVN K L S V R L 3 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1162.6346 P26640;A0A140T936 P26640 451 461 VARS Valine--tRNA ligase yes no 2 0.00011537 134.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2771 1.0868 20.953 5 Median 1.7997 1.7312 NaN 1 1 Median 1.2346 1.0401 NaN 1 0 Median 1.0919 1.2005 NaN 1 0 Median 1.2771 1.0802 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3221 1.0868 NaN 1 0 Median 65689000 27961000 37727000 26705000 10520000 16186000 5683300 2583700 3099600 14762000 6723000 8038900 17906000 7836800 10070000 0 0 0 631510 298270 333240 22645 2148 23622 119483;119484;119485;119486;119487 120619;120620;120621;120622;120623 120623 5 LSAEAAEK LKKFIAYCRVKCGPRLSAEAAEKLKNRYII RVKCGPRLSAEAAEKLKNRYIIMRSGARQH R L S E K L 3 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 8 0 817.41815 P33992;B1AHB1 P33992 574 581 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.0083069 63.419 By matching By matching By MS/MS 1 1 1 0.86207 0.86456 17.008 3 Median 0.86207 0.86456 NaN 1 0 Median 1.2502 1.1272 NaN 1 0 Median 0.77323 0.82097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2890600 1425100 1465500 245890 124330 121560 464080 186410 277670 2180600 1114300 1066300 0 0 0 0 0 0 0 0 0 22646 2224 23623 119488;119489;119490 120624;120625;120626 120625 3 LSAEDLVLEGAGLR QNLSFSFRVDRRDTRLSAEDLVLEGAGLRV RLSAEDLVLEGAGLRVSVPLIAQGNSYPSE R L S L R V 2 1 0 1 0 0 2 2 0 0 4 0 0 0 0 1 0 0 0 1 0 0 14 0 1441.7777 P11047 P11047 590 603 LAMC1 Laminin subunit gamma-1 yes yes 2 6.563E-05 90.685 By MS/MS By MS/MS 1 1 1.0668 1.0401 NaN 1 Median 1.0668 1.0401 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3505800 1501900 2003900 3505800 1501900 2003900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22647 1949 23624 119491;119492 120627;120628 120627 2 LSAEENPDDSEVPSSSGINSTK ERKTREKKSLQEKGKLSAEENPDDSEVPSS DDSEVPSSSGINSTKSQDKDVNEGETSDGV K L S T K S 1 0 2 2 0 0 3 1 0 1 1 1 0 0 2 6 1 0 0 1 0 0 22 0 2262.0135 Q9Y5Q9;A0A494C1S7 Q9Y5Q9 42 63 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 5.9492E-14 87.519 By MS/MS 1 0.59671 0.65646 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59671 0.65646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6030700 4301100 1729500 0 0 0 0 0 0 6030700 4301100 1729500 0 0 0 0 0 0 0 0 0 22648 4467 23625 119493 120629 120629 1 LSAEERDQLLPNLR ______________________________ RLSAEERDQLLPNLRAVGWNELEGRDAIFK R L S L R A 1 2 1 1 0 1 2 0 0 0 4 0 0 0 1 1 0 0 0 0 0 0 14 1 1652.8846 P61457 P61457 8 21 PCBD1 Pterin-4-alpha-carbinolamine dehydratase yes yes 3 0.013765 24.935 By MS/MS 1 0.83803 0.71452 NaN 1 Median NaN NaN NaN 0 0 Median 0.83803 0.71452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2869600 1713000 1156600 0 0 0 2869600 1713000 1156600 0 0 0 0 0 0 0 0 0 0 0 0 22649 2558 23626 119494 120630;120631 120630 2 LSAEKVEIATLTR ALAIKVLNKTMDVSKLSAEKVEIATLTREN SKLSAEKVEIATLTRENGKTVIRVLKQKEV K L S T R E 2 1 0 0 0 0 2 0 0 1 2 1 0 0 0 1 2 0 0 1 0 0 13 1 1429.814 P25789;H0YMZ1;H0YN18;H0YL69 P25789 206 218 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type yes no 2;3 1.5115E-07 144.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 1 1 1.1354 1.1461 17.023 15 Median 1.1316 1.1654 8.8858 6 0 Median 1.1642 1.0722 19.779 5 0 Median 1.3276 1.377 22.197 2 0 Median 1.0959 0.97014 NaN 1 0 Median 1.1944 1.262 NaN 1 0 Median NaN NaN NaN 0 0 Median 181340000 80224000 101110000 135290000 59348000 75938000 28731000 13139000 15592000 10724000 4861200 5862500 3259100 1460300 1798800 3337000 1414800 1922200 0 0 0 22650 2138 23627 119495;119496;119497;119498;119499;119500;119501;119502;119503;119504;119505;119506;119507;119508;119509 120632;120633;120634;120635;120636;120637;120638;120639;120640;120641;120642;120643;120644;120645 120632 14 LSAETLQQVNR AFAHKDRDVQDETYRLSAETLQQVNRLLAC ETYRLSAETLQQVNRLLACYKGTHNFHNFT R L S N R L 1 1 1 0 0 2 1 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 11 0 1257.6677 Q9Y606;F5H1S9;G8JLB3 Q9Y606 224 234 PUS1 tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase yes no 2 0.00013635 92.838 By matching By MS/MS 1 1 1.121 1.0897 6.5554 2 Median NaN NaN NaN 0 0 Median 1.193 1.0404 NaN 1 0 Median 1.0534 1.1414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11291000 4966800 6324500 0 0 0 6814900 2653100 4161700 4476500 2313700 2162800 0 0 0 0 0 0 0 0 0 22651 4475 23628 119510;119511 120646;120647 120647 2 LSAETWDLLR AGYEAQGARPKRTQRLSAETWDLLRLPLER KRTQRLSAETWDLLRLPLEREQNGDSHHSG R L S L R L 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 10 0 1202.6295 A0A0A0MSK4;A0A0A0MRC4;Q86YR5 A0A0A0MSK4 412 421 GPSM1 G-protein-signaling modulator 1 yes no 2 0.0031947 57.598 By MS/MS By matching 1 1 0.99851 0.92136 27.62 2 Median 0.78244 0.7579 NaN 1 0 Median 1.2742 1.1201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5056700 2480000 2576700 3575800 1895000 1680700 1480900 584990 895930 0 0 0 0 0 0 0 0 0 0 0 0 22652 157 23629 119512;119513 120648 120648 1 LSAFGQIYK QQKEDITHSAQHALRLSAFGQIYKVLEMDP AQHALRLSAFGQIYKVLEMDPLPSSKPFQK R L S Y K V 1 0 0 0 0 1 0 1 0 1 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1025.5546 Q96SI9 Q96SI9 316 324 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.0020081 75.213 By MS/MS By MS/MS 1 1 0.82613 0.84497 0.69613 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83115 0.84082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82114 0.84914 NaN 1 0 Median NaN NaN NaN 0 0 Median 15994000 8362100 7631800 0 0 0 0 0 0 11818000 6193700 5624200 0 0 0 4176000 2168400 2007600 0 0 0 22653 3734 23630 119514;119515 120649;120650 120649 2 LSAIFLR VYEAVKNYTDKRGRRLSAIFLRLPSRSELP YTDKRGRRLSAIFLRLPSRSELPDYYLTIK R L S L R L 1 1 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 7 0 818.50142 Q86U86;E7EVG2;H0Y5B5 Q86U86 680 686 PBRM1 Protein polybromo-1 yes no 2 0.0024411 126.16 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.0977 1.1453 18.203 4 Median NaN NaN NaN 0 0 Median 1.0324 0.91501 NaN 1 0 Median 0.97923 1.0702 NaN 1 0 Median 1.5847 1.3987 NaN 1 0 Median 1.1672 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median 13571000 6502700 7068700 0 0 0 365970 193310 172660 9813100 4707800 5105300 819130 342980 476140 2573300 1258600 1314700 0 0 0 22654 3273 23631 119516;119517;119518;119519 120651;120652;120653 120651 3 LSAIYGGTYMLNKPIEEIIVQNGK YPLYGLGELPQGFARLSAIYGGTYMLNKPI MLNKPIEEIIVQNGKVIGVKSEGEIARCKQ R L S G K V 1 0 2 0 0 1 2 3 0 4 2 2 1 0 1 1 1 0 2 1 0 0 24 1 2650.404 P50395;Q5SX87;Q5SX91 P50395 241 264 GDI2 Rab GDP dissociation inhibitor beta yes no 3 0.00040241 26.84 By MS/MS By MS/MS By matching 1 1 1 0.76397 0.72564 2.2741 3 Median NaN NaN NaN 0 0 Median 0.7666 0.72123 NaN 1 0 Median 0.71608 0.75223 NaN 1 1 Median 0.76397 0.72564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6629200 2888400 3740700 0 0 0 2199800 1243500 956290 4345500 1596400 2749100 83868 48486 35382 0 0 0 0 0 0 22655 2411 23632 119520;119521;119522 120654;120655 120655 2 LSAKPAPPKPEPK GSKVTKQEPTRRSARLSAKPAPPKPEPKPR ARLSAKPAPPKPEPKPRKTSAKKEPGAKIS R L S P K P 2 0 0 0 0 0 1 0 0 0 1 3 0 0 5 1 0 0 0 0 0 0 13 2 1358.7922 A0A087WZE9;P05204;Q15651 A0A087WZE9 30 42 HMGN3;HMGN2 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 3 yes no 3 0.0024195 37.613 By MS/MS By matching 2 1 0.50257 0.56707 20.57 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44745 0.50045 17.675 2 0 Median 0.72227 0.66412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3642200 2387500 1254700 0 0 0 0 0 0 3330100 2198700 1131400 312140 188840 123300 0 0 0 0 0 0 22656 93 23633 119523;119524;119525 120656;120657;120658 120656 3 LSALFSSSQKR LYHAQLKVKEEEVHRLSALFSSSQKRIAEL EVHRLSALFSSSQKRIAELEEELVCVQKEA R L S K R I 1 1 0 0 0 1 0 0 0 0 2 1 0 1 0 4 0 0 0 0 0 0 11 1 1222.667 Q14789 Q14789 2644 2654 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.032336 24.071 By MS/MS 1 1.5863 1.6146 NaN 1 Median 1.5863 1.6146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1543700 652790 890920 1543700 652790 890920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22657 2900 23634 119526 120659 120659 0 LSALLFK EESVEQKRSKQNATKLSALLFKHKEQLRAE RSKQNATKLSALLFKHKEQLRAEILKKRAL K L S F K H 1 0 0 0 0 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 7 0 790.49528 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;J3QQQ8;J3KSK9 Q12830 2737 2743 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.014081 86.866 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6828600 0 6828600 0 0 0 0 0 0 6585700 0 6585700 242870 0 242870 0 0 0 0 0 0 22658 2762 23635 119527;119528;119529 120660;120661;120662 120660 3 LSALLQETK TETIIATKTTDVEGRLSALLQETKELKNEI TDVEGRLSALLQETKELKNEIKALSEERTA R L S T K E 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 9 0 1001.5757 O60763 O60763 850 858 USO1 General vesicular transport factor p115 yes yes 2 0.0067877 69.825 By MS/MS By MS/MS 1 3 0.71522 0.61033 39.928 3 Median 0.35471 0.35022 NaN 1 0 Median 0.77589 0.681 15.496 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9300500 5617900 3682700 3396900 2306800 1090100 5903600 3311100 2592500 0 0 0 0 0 0 0 0 0 0 0 0 22659 1630 23636 119530;119531;119532;119533 120663;120664;120665 120664 2 LSALNESLAQDKLDLNR KLRAEEASLQDSLSKLSALNESLAQDKLDL ALNESLAQDKLDLNRLVAQLEEEKSALQGR K L S N R L 2 1 2 2 0 1 1 0 0 0 5 1 0 0 0 2 0 0 0 0 0 0 17 1 1899.0062 Q5TZA2;B1AKD8;A0A087WW81 Q5TZA2 741 757 CROCC Rootletin yes no 3 1.0515E-05 61.226 By MS/MS By matching By MS/MS 1 1 1 0.66566 0.7983 40.314 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66566 0.7983 NaN 1 0 Median 1.3973 1.3489 NaN 1 0 Median 0.54033 0.61065 NaN 1 0 Median NaN NaN NaN 0 0 Median 9289100 5707600 3581500 0 0 0 0 0 0 5222600 3139400 2083200 235670 88343 147330 3830900 2479900 1351000 0 0 0 22660 3107 23637 119534;119535;119536 120666;120667 120667 1 LSAMLVPVTPEVKPK GQGDMRQEPKRRSARLSAMLVPVTPEVKPK LSAMLVPVTPEVKPKRTSSSRKMKTKSDMM R L S P K R 1 0 0 0 0 0 1 0 0 0 2 2 1 0 3 1 1 0 0 3 0 0 15 1 1607.9321 Q5JSL0;Q5JSK6;P82970;Q5JSK7;Q5JSK8 Q5JSL0 23 37 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 yes no 2;3 0.00016286 48.892 By MS/MS By matching By MS/MS 4 2 1 0.61073 0.64247 40.51 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60449 0.63353 14.501 4 0 Median 1.2782 1.2777 12.672 2 0 Median 0.49283 0.52594 NaN 1 0 Median NaN NaN NaN 0 0 Median 34163000 21050000 13113000 0 0 0 0 0 0 24825000 15361000 9464500 1231900 563430 668420 8106100 5126100 2980100 0 0 0 22661 2660 23638 119537;119538;119539;119540;119541;119542;119543 120668;120669;120670 120668 3 LSANQQNILK RGSNSLPLLRSVLDKLSANQQNILKFIACN SVLDKLSANQQNILKFIACNEIFLMPATVF K L S L K F 1 0 2 0 0 2 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1127.6299 P57088;D6RAA6;H0Y8N0 P57088 149 158 TMEM33 Transmembrane protein 33 yes no 2 7.501E-11 178.83 By MS/MS By matching By matching 3 1 1 0.96435 0.84675 21.999 5 Median NaN NaN NaN 0 0 Median 0.96435 0.84675 25.478 3 0 Median 1.1772 1.1321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95414 0.79439 NaN 1 0 Median 22554000 7182800 15371000 0 0 0 19946000 5971900 13974000 2131200 981520 1149700 0 0 0 0 0 0 476680 229390 247290 22662 2516 23639 119544;119545;119546;119547;119548 120671;120672 120671 2 LSAQAQVAEDILDKYR GPDRFSTLTDDPSPRLSAQAQVAEDILDKY SAQAQVAEDILDKYRNAIKRTSPSDGAMAN R L S Y R N 3 1 0 2 0 2 1 0 0 1 2 1 0 0 0 1 0 0 1 1 0 0 16 1 1818.9476 Q14C86;F8W9S7 Q14C86 1022 1037 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2;3 0.00064812 58.487 By MS/MS By matching 2 1 1.0327 1.0418 26.145 3 Median 0.8882 0.89358 21.702 2 0 Median NaN NaN NaN 0 0 Median 1.0869 1.2893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20541000 11250000 9290600 19807000 10878000 8928700 0 0 0 733470 371490 361980 0 0 0 0 0 0 0 0 0 22663 2907 23640 119549;119550;119551 120673;120674;120675 120675 3 LSASDMLQVR QPHASSGAKTLKKDRLSASDMLQVRKVMEH LKKDRLSASDMLQVRKVMEHVYEKIINLDN R L S V R K 1 1 0 1 0 1 0 0 0 0 2 0 1 0 0 2 0 0 0 1 0 0 10 0 1118.5754 Q8TAF3 Q8TAF3 585 594 WDR48 WD repeat-containing protein 48 yes yes 2 0.0014865 87.476 By MS/MS By MS/MS 1 1 1.0877 0.93706 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0877 0.93706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1499000 642530 856480 0 0 0 0 0 0 0 0 0 1499000 642530 856480 0 0 0 0 0 0 22664 3453 23641;23642 119552;119553 120676;120677 120676 1730 2 LSATESIVEIVK SSTNLINEINGVSEKLSATESIVEIVKQEV SEKLSATESIVEIVKQEVLPLTLELEILEN K L S V K Q 1 0 0 0 0 0 2 0 0 2 1 1 0 0 0 2 1 0 0 2 0 0 12 0 1287.7286 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 555 566 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.00055672 75.294 By MS/MS By matching By matching By matching 1 1 1 1 1.1564 1.0319 24.786 4 Median 0.98022 0.94385 NaN 1 0 Median 1.116 0.98336 NaN 1 0 Median 1.4628 1.6222 NaN 1 0 Median 1.1983 1.0827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6558900 3180600 3378200 3803100 1916000 1887100 1746700 769770 976910 875090 436150 438940 134020 58770 75253 0 0 0 0 0 0 22665 300 23643 119554;119555;119556;119557 120678;120679 120679 2 LSAVEAIANAISVVSSNGPGNR EEEAERSERNTFAERLSAVEAIANAISVVS ANAISVVSSNGPGNRAGSSSSRSLRLREMM R L S N R A 4 1 3 0 0 0 1 2 0 2 1 0 0 0 1 4 0 0 0 3 0 0 22 0 2125.1127 O95071;E7EMW7;H0YBB4;H0YAV7 O95071 956 977 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 0.026533 13.321 By MS/MS By matching 2 1 0.95655 0.89913 4.6692 3 Median 0.91348 0.9029 6.5944 2 0 Median 1.0363 0.89913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1057600 527920 529640 851460 435460 416010 206100 92467 113630 0 0 0 0 0 0 0 0 0 0 0 0 22666 1744 23644 119558;119559;119560 120680 120680 1 LSAYVSYGGLLMR YRIEGDETSTEAATRLSAYVSYGGLLMRLQ TRLSAYVSYGGLLMRLQGDANNLHGFEVDS R L S M R L 1 1 0 0 0 0 0 2 0 0 3 0 1 0 0 2 0 0 2 1 0 0 13 0 1428.7435 C9JLU1;P52434 C9JLU1 112 124 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2 0.020598 30.612 By MS/MS By matching 1 1 1.2244 1.0915 5.4224 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.121 1.1341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3373 1.0504 NaN 1 0 Median 2982700 1419200 1563500 0 0 0 0 0 0 2536700 1215500 1321100 0 0 0 0 0 0 446040 203710 242330 22667 707 23645 119561;119562 120681 120681 1 LSCFAQTVSPAEK QSEAHRRYFGGTEDRLSCFAQTVSPAEKWS DRLSCFAQTVSPAEKWSVHIAMHPQVNIYS R L S E K W 2 0 0 0 1 1 1 0 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1436.697 Q16658 Q16658 119 131 FSCN1 Fascin yes yes 2 4.9399E-05 88.596 By MS/MS By MS/MS 1 1 0.97897 0.87238 0.86296 2 Median 0.92617 0.86707 NaN 1 0 Median 1.0348 0.87772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16290000 7822300 8468200 7461300 3818900 3642400 8829200 4003400 4825800 0 0 0 0 0 0 0 0 0 0 0 0 22668 2993 23646 119563;119564 120682;120683;120684;120685 120683 4 LSDALAVEDDQVAPVPLNVVETSSSVR NLHESDSESVPRDFKLSDALAVEDDQVAPV APVPLNVVETSSSVRERKKKEKKQKPVLEE K L S V R E 3 1 1 3 0 1 2 0 0 0 3 0 0 0 2 4 1 0 0 6 0 0 27 0 2809.4345 Q86UP2 Q86UP2 86 112 KTN1 Kinectin yes yes 3 0.037921 11.003 By MS/MS 1 0.90129 0.97286 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90129 0.97286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1076800 662040 414780 0 0 0 0 0 0 1076800 662040 414780 0 0 0 0 0 0 0 0 0 22669 3280 23647 119565 120686 120686 1 LSDDNTIGKEEIQQR AHEPAIQGVLDTGKKLSDDNTIGKEEIQQR LSDDNTIGKEEIQQRLAQFVEHWKELKQLA K L S Q R L 0 1 1 2 0 2 2 1 0 2 1 1 0 0 0 1 1 0 0 0 0 0 15 1 1744.8592 A0A0D9SF54;Q13813 Q13813 1830 1844 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 5.5648E-25 178.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 5 3 2 1.0545 1.1205 21.706 20 Median 1.5121 1.5206 9.9693 3 1 Median 1.3442 1.226 21.292 3 0 Median 0.89168 1.0197 22.467 5 1 Median 1.158 1.1128 11.548 5 0 Median 1.0142 1.1351 0.86571 2 0 Median 1.0332 0.9073 0.16166 2 0 Median 430880000 202590000 228290000 38112000 14300000 23812000 118650000 51329000 67321000 167930000 86861000 81066000 68467000 32006000 36461000 31661000 15280000 16380000 6063100 2814900 3248200 22670 264;2838 23648 119566;119567;119568;119569;119570;119571;119572;119573;119574;119575;119576;119577;119578;119579;119580;119581;119582;119583;119584;119585;119586 120687;120688;120689;120690;120691;120692;120693;120694;120695;120696;120697;120698;120699;120700;120701;120702;120703;120704;120705;120706;120707;120708;120709;120710;120711;120712;120713;120714;120715;120716;120717;120718;120719;120720 120701 34 LSDEGEWLVR AQQMYAATKGLRWYRLSDEGEWLVRELNLP LRWYRLSDEGEWLVRELNLPVDRTEGGWIS R L S V R E 0 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 10 0 1202.5932 P54098;H0YD36;A0A1B0GTU7;A0A590UK63 P54098 997 1006 POLG DNA polymerase subunit gamma-1 yes no 2 0.034259 32.841 By MS/MS By matching 1 1 1.5337 1.4158 18 2 Median 1.2711 1.2466 NaN 1 0 Median 1.8506 1.608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4685200 1802000 2883200 2563000 1093900 1469100 2122200 708040 1414100 0 0 0 0 0 0 0 0 0 0 0 0 22671 2479 23649 119587;119588 120721 120721 1 LSDEHEPEQR ESGNGEDLTKVPLKRLSDEHEPEQRKKIKR VPLKRLSDEHEPEQRKKIKRRNQAIYAAVD R L S Q R K 0 1 0 1 0 1 3 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 10 0 1238.5527 Q9UK59 Q9UK59 513 522 DBR1 Lariat debranching enzyme yes yes 3 0.013717 27.864 By MS/MS By matching By matching 1 1 1 0.92007 0.91425 7.6775 3 Plateau NaN NaN NaN 0 0 Median 0.97307 0.86008 NaN 1 0 Median 0.90283 0.93627 NaN 1 0 Median 0.92007 0.80324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1504900 832300 672620 0 0 0 519490 265810 253680 909910 526420 383490 75524 40064 35460 0 0 0 0 0 0 22672 4306 23650 119589;119590;119591 120722 120722 1 LSDEPVEAKEDYTK EPSASLPNPPSKKIKLSDEPVEAKEDYTKF KLSDEPVEAKEDYTKFNTKDLKTEKKNSKM K L S T K F 1 0 0 2 0 0 3 0 0 0 1 2 0 0 1 1 1 0 1 1 0 0 14 1 1622.7675 Q5TBB1;A0A2R8YGP2;A0A2R8Y6Q6;A0A087WXR7;A0A2R8YCX2;A0A2R8Y6M7;A0A2R8Y7R8;A0A2R8YEH2;A0A2R8Y6Y1;A0A2R8YCJ4;A0A2R8Y761;A0A087WZJ6;A0A2R8Y687;A0A2R8Y4S2;A0A2R8YEB4;A0A2R8Y4Y9 Q5TBB1 251 264 RNASEH2B Ribonuclease H2 subunit B yes no 3 0.0002658 58.885 By matching By MS/MS By MS/MS 1 1 1 0.83313 0.81489 2.6388 3 Plateau 0.83313 0.78013 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78437 0.82216 NaN 1 0 Median 0.90377 0.80477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8447200 4973800 3473400 1804300 962520 841810 0 0 0 3392500 1829700 1562700 3250400 2181500 1068900 0 0 0 0 0 0 22673 69 23651 119592;119593;119594 120723;120724 120724 2 LSDESLDSFLIELEK PNLKSHAVTMFEVGKLSDESLDSFLIELEK LSDESLDSFLIELEKVQSTGEGEAQRYFDH K L S E K V 0 0 0 2 0 0 3 0 0 1 4 1 0 1 0 3 0 0 0 0 0 0 15 0 1736.872 E7ER68;Q658Y4 E7ER68 412 426 FAM91A1 Protein FAM91A1 yes no 2 0.0014058 39.917 By MS/MS By matching 1 1 1.1678 1.0299 8.4616 2 Median NaN NaN NaN 0 0 Median 1.224 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1142 0.97012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1270100 530100 739970 0 0 0 1153700 477760 675900 0 0 0 116410 52340 64066 0 0 0 0 0 0 22674 882 23652 119595;119596 120725 120725 1 LSDETLIDIMTR DDQVKKIDKYLYAMRLSDETLIDIMTRFRK AMRLSDETLIDIMTRFRKEMKNGLSRDFNP R L S T R F 0 1 0 2 0 0 1 0 0 2 2 0 1 0 0 1 2 0 0 0 0 0 12 0 1405.7123 P19367;B1AR62 P19367 31 42 HK1 Hexokinase-1 yes no 2 0.00011203 90.685 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.98379 0.99783 20.235 6 Median 0.95062 0.91504 10.383 2 0 Median 1.1086 0.95835 26.04 2 0 Median 0.94971 1.0111 NaN 1 0 Median 1.5592 1.3882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26659000 12149000 14510000 6586100 3258900 3327300 19010000 8318000 10692000 940000 525450 414550 122900 46704 76195 0 0 0 0 0 0 22675 2064 23653 119597;119598;119599;119600;119601;119602 120726;120727;120728;120729;120730 120730 5 LSDFLTLEGR ESSETKKSVEQKLQKLSDFLTLEGRNSKIK QKLQKLSDFLTLEGRNSKIKQVDSVLKHVK K L S G R N 0 1 0 1 0 0 1 1 0 0 3 0 0 1 0 1 1 0 0 0 0 0 10 0 1149.603 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1878 1887 SYNE2 Nesprin-2 yes no 2 0.00029687 126.07 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.1831 0.99353 17.378 5 Median NaN NaN NaN 0 0 Median 1.5375 1.3172 NaN 1 0 Median 0.94213 0.99353 NaN 1 0 Median 1.4737 1.2815 NaN 1 0 Median 0.85565 0.89859 NaN 1 0 Median 1.1831 0.97097 NaN 1 0 Median 16297000 8236700 8060500 0 0 0 872940 365400 507540 11835000 6149800 5684800 725610 282520 443090 2618300 1322300 1295900 245890 116750 129140 22676 3521 23654 119603;119604;119605;119606;119607 120731;120732 120732 2 LSDFNDITNMLLLK DKHFGKGGSKLLRMKLSDFNDITNMLLLKM KLSDFNDITNMLLLKMNKDSKPPGNLKECS K L S L K M 0 0 2 2 0 0 0 0 0 1 4 1 1 1 0 1 1 0 0 0 0 0 14 0 1635.8542 P78527 P78527 3656 3669 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0013049 60.434 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 3 3 6 2 2 3 1.017 1.011 18.01 19 Median 1.017 1.0204 6.4624 3 0 Plateau 1.2624 1.1222 12.778 3 0 Median 0.87907 0.95858 25.827 6 0 Median 1.4849 1.3037 3.3384 2 0 Median 0.87247 0.9126 6.6118 2 0 Median 1.4263 1.1894 12.421 3 0 Plateau 75483000 35788000 39695000 38634000 18758000 19876000 15780000 6800300 8979900 13345000 6577400 6767800 755860 282720 473140 6153000 3038300 3114700 814350 331000 483340 22677 2647 23655;23656 119608;119609;119610;119611;119612;119613;119614;119615;119616;119617;119618;119619;119620;119621;119622;119623;119624;119625;119626 120733;120734;120735;120736;120737;120738 120734 1322 6 LSDGDMTSALR ADSAAGEGNRSLVHRLSDGDMTSALRGVAD LVHRLSDGDMTSALRGVADDQGQHPLLKML R L S L R G 1 1 0 2 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 0 0 0 11 0 1164.5445 Q8WXE1;A0A0U1RQJ8 Q8WXE1 517 527 ATRIP ATR-interacting protein yes no 2 0.0041947 48.423 By MS/MS By MS/MS By matching 1 1 1 1.4206 1.4087 30.395 3 Median 1.4206 1.4087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6615 1.8047 NaN 1 0 Median 1.1507 0.9859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8294000 3416600 4877400 5200100 2191200 3008900 0 0 0 2647900 994050 1653900 445960 231320 214640 0 0 0 0 0 0 22678 3518 23657 119627;119628;119629 120739;120740;120741 120739 3 LSDGEINAQESTYK QVLQPQASLESSTQRLSDGEINAQESTYKV RLSDGEINAQESTYKVSKADDRYSQSVIRS R L S Y K V 1 0 1 1 0 1 2 1 0 1 1 1 0 0 0 2 1 0 1 0 0 0 14 0 1553.7209 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 714 727 QSER1 Glutamine and serine-rich protein 1 yes no 2 2.357E-07 111.86 By MS/MS 2 0.7955 0.88163 10.161 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7955 0.88163 10.161 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16486000 9277400 7208700 0 0 0 0 0 0 16486000 9277400 7208700 0 0 0 0 0 0 0 0 0 22679 418 23658 119630;119631 120742;120743 120743 2 LSDGFNGADLR PITKHGEIDYEAIVKLSDGFNGADLRNVCT AIVKLSDGFNGADLRNVCTEAGMFAIRADH K L S L R N 1 1 1 2 0 0 0 2 0 0 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1163.5571 A0A087X2I1;P62333;H0YJC0 A0A087X2I1 348 358 PSMC6 26S protease regulatory subunit 10B yes no 2 0.00017784 93.111 By MS/MS By matching By matching By matching 1 1 2 1 1.2026 1.214 14.381 5 Median 0.97657 0.97434 NaN 1 0 Median 1.1591 0.99949 NaN 1 0 Median 1.2311 1.3067 0.4163 2 0 Median 1.3896 1.214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27966000 13545000 14421000 14236000 7350300 6885400 2789600 1240300 1549300 10299000 4670200 5628600 641910 284270 357640 0 0 0 0 0 0 22680 138 23659 119632;119633;119634;119635;119636 120744 120744 1 LSDGIGVMLPQVLK KTLRTLLEEEYFREKLSDGIGVMLPQVLKG KLSDGIGVMLPQVLKGMTSESDSIGLTPGE K L S L K G 0 0 0 1 0 1 0 2 0 1 3 1 1 0 1 1 0 0 0 2 0 0 14 0 1468.8323 P52701;A0A494C0M1;A0A087WWJ1 P52701 647 660 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00096899 53.751 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 0.96356 0.90416 16.125 6 Median 0.7429 0.73415 16.389 2 0 Median 1.0823 0.92816 NaN 1 0 Median 0.81199 0.88078 NaN 1 0 Median 1.1403 0.99904 5.4177 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15274000 7944400 7329500 5393300 2839300 2554000 4449700 2225200 2224500 4669300 2585700 2083700 761570 294260 467310 0 0 0 0 0 0 22681 2453 23660 119637;119638;119639;119640;119641;119642 120745;120746;120747;120748;120749;120750 120750 6 LSDGQGFTQDDIQAGR VQAPRKGNLQLQGTRLSDGQGFTQDDIQAG SDGQGFTQDDIQAGRVTYGATARASEAVED R L S G R V 1 1 0 3 0 3 0 3 0 1 1 0 0 1 0 1 1 0 0 0 0 0 16 0 1706.786 Q6UVK1 Q6UVK1 841 856 CSPG4 Chondroitin sulfate proteoglycan 4 yes yes 2 0.00013937 62.89 By MS/MS 1 0.67327 0.6635 NaN 1 Median 0.67327 0.6635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2976100 1734700 1241500 2976100 1734700 1241500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22682 3186 23661 119643 120751 120751 1 LSDGVAVLK TSEYEKEKLNERLAKLSDGVAVLKVGGTSD NERLAKLSDGVAVLKVGGTSDVEVNEKKDR K L S L K V 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 900.52803 P10809 P10809 397 405 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.00060254 110.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 3 2 1 1.4013 1.206 22.18 17 Median 1.1551 1.0594 9.1265 5 1 Median 1.4327 1.212 21.715 5 1 Median 1.1075 1.071 NaN 1 0 Median 1.5323 1.3013 25.66 3 0 Plateau 1.6748 1.674 15.707 2 0 Median 1.8544 1.523 NaN 1 0 Median 573620000 238220000 335390000 191900000 87231000 104670000 329540000 129260000 200280000 27908000 12488000 15420000 9902000 3989400 5912600 7278100 2568200 4709900 7091400 2682500 4408800 22683 1947 23662 119644;119645;119646;119647;119648;119649;119650;119651;119652;119653;119654;119655;119656;119657;119658;119659;119660 120752;120753;120754;120755;120756;120757;120758;120759;120760;120761;120762;120763;120764;120765;120766;120767;120768;120769;120770 120758 19 LSDIGEGIR LKTTAALRGQVVQFKLSDIGEGIREVTVKE QVVQFKLSDIGEGIREVTVKEWYVKEGDTV K L S I R E 0 1 0 1 0 0 1 2 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 958.50836 P11182;Q5VVL7 P11182 69 77 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 2 0.0005086 101.54 By MS/MS 1 0.81311 0.70028 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81311 0.70028 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12915000 8347400 4567400 0 0 0 0 0 0 0 0 0 12915000 8347400 4567400 0 0 0 0 0 0 22684 1955 23663 119661 120771 120771 1 LSDIWAK ALTGPVVDIVTGHARLSDIWAKTPPITRKA DIVTGHARLSDIWAKTPPITRKAAQLYTLW R L S A K T 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 7 0 831.44905 Q9UBM7;E9PM00;E9PJ54;E9PRL8;E9PQ71;E9PIP9;E9PLZ2 Q9UBM7 82 88 DHCR7 7-dehydrocholesterol reductase yes no 2 0.0054115 100.07 By MS/MS By MS/MS 1 1 1.1969 1.1299 16.121 2 Median 1.007 1.0082 NaN 1 1 Median 1.4226 1.2663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27801000 12381000 15420000 10078000 4979400 5098400 17724000 7402100 10321000 0 0 0 0 0 0 0 0 0 0 0 0 22685 4241 23664 119662;119663 120772;120773;120774 120773 3 LSDKVVASVK DLEKQNRLLHDQIEKLSDKVVASVKEGVQG DQIEKLSDKVVASVKEGVQGPLNVSLSEEG K L S V K E 1 0 0 1 0 0 0 0 0 0 1 2 0 0 0 2 0 0 0 3 0 0 10 1 1044.6179 P12270 P12270 1166 1175 TPR Nucleoprotein TPR yes yes 2 0.0019063 88.496 By MS/MS By matching By MS/MS 2 1 1 1.0134 1.0471 15.291 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85978 0.98231 17.874 2 0 Median 1.058 0.98364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3801 1.2315 NaN 1 1 Median 7224900 3293900 3930900 0 0 0 0 0 0 4290400 2122300 2168100 277930 149020 128920 0 0 0 2656500 1022600 1633900 22686 1978 23665 119664;119665;119666;119667 120775;120776;120777 120776 3 LSDLDSETR DPEINTKKINPENSKLSDLDSETRSMVEKM NPENSKLSDLDSETRSMVEKMMYDQRQKSM K L S T R S 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 9 0 1034.488 Q9Y266 Q9Y266 276 284 NUDC Nuclear migration protein nudC yes yes 2 0.00062526 108.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.2554 1.2503 39.886 5 Median 1.2554 1.2503 NaN 1 0 Median 1.1925 1.0393 NaN 1 0 Median 1.6427 1.7287 NaN 1 0 Median 1.2494 1.109 NaN 1 0 Median 2.5527 2.7323 NaN 1 1 Median NaN NaN NaN 0 0 Median 33322000 14423000 18899000 10231000 4756400 5474400 19311000 8481500 10829000 1052400 361240 691120 1096100 395050 701010 1632000 428710 1203300 0 0 0 22687 4376 23666 119668;119669;119670;119671;119672 120778;120779;120780;120781;120782;120783;120784 120782 7 LSDLDYMQFIR RWLIKEELEEMLVEKLSDLDYMQFIRLLEK LVEKLSDLDYMQFIRLLEKLLTSQCGAAEE K L S I R L 0 1 0 2 0 1 0 0 0 1 2 0 1 1 0 1 0 0 1 0 0 0 11 0 1399.6806 P82933 P82933 213 223 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 2 0.00012194 116.52 By MS/MS By MS/MS By matching 1 2 1 1.3413 1.355 40.685 4 Median 1.1549 1.1487 NaN 1 0 Median 1.3618 1.2274 65.747 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5577 1.5983 NaN 1 0 Median NaN NaN NaN 0 0 Median 13020000 5273400 7746700 3932500 1798300 2134300 8757500 3312500 5445000 0 0 0 0 0 0 330140 162680 167460 0 0 0 22688 2659 23667 119673;119674;119675;119676 120785;120786;120787 120787 3 LSDLLAPISEQIK LLVTASQCQQPAENKLSDLLAPISEQIKEV NKLSDLLAPISEQIKEVITFREKNRGSKLF K L S I K E 1 0 0 1 0 1 1 0 0 2 3 1 0 0 1 2 0 0 0 0 0 0 13 0 1425.8079 Q01518;Q5T0R1;Q5T0R9;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2 Q01518 101 113 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein yes no 2 0.00082792 64.297 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 1 3 0.95487 0.86771 27.069 12 Median 1.0527 0.97274 14.632 3 0 Median 1.0242 0.86551 21.349 4 0 Median 0.9619 0.94958 NaN 1 0 Median 0.83017 0.71802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72939 0.62156 34.592 3 0 Median 54489000 26936000 27553000 30254000 14661000 15592000 14079000 7116300 6962900 7546400 3715800 3830600 967910 548200 419710 0 0 0 1641700 894680 747010 22689 2686 23668 119677;119678;119679;119680;119681;119682;119683;119684;119685;119686;119687;119688 120788;120789;120790;120791;120792;120793;120794;120795;120796 120793 9 LSDLLDWK QSRRQRIIQRNRTERLSDLLDWKYLGRYYM QRNRTERLSDLLDWKYLGRYYMSARHMALS R L S W K Y 0 0 0 2 0 0 0 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 8 0 988.52295 P13807;M0QYU1 P13807 592 599 GYS1 Glycogen [starch] synthase, muscle yes no 2 0.028842 40.103 By MS/MS By matching By matching 3 1 2 1.2226 1.1783 19.4 6 Median 0.87968 0.86066 22.406 3 0 Median NaN NaN NaN 0 0 Median 1.1954 1.2082 NaN 1 0 Median 1.3627 1.2055 6.7818 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6862100 3501100 3361000 4615000 2367200 2247800 0 0 0 1814900 930700 884220 432200 203180 229020 0 0 0 0 0 0 22690 1997 23669 119689;119690;119691;119692;119693;119694 120797;120798 120797 2 LSDLVNTAILIALNKR EKLSAAIVLKNHHSRLSDLVNTAILIALNK SDLVNTAILIALNKREYEIPSNLTPADVFF R L S K R E 2 1 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 16 1 1753.0462 Q8WUM0 Q8WUM0 660 675 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.0482 10.467 By MS/MS By matching 1 1 1.1871 1.3383 11.895 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0785 1.2304 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3065 1.4558 NaN 1 0 Median NaN NaN NaN 0 0 Median 2144000 1052200 1091800 0 0 0 0 0 0 1703700 877280 826440 0 0 0 440260 174910 265340 0 0 0 22691 3492 23670 119695;119696 120799 120799 1 LSDQFHDILIR DKNELKQALSGFGYRLSDQFHDILIRKFDR FGYRLSDQFHDILIRKFDRQGRGQIAFDDF R L S I R K 0 1 0 2 0 1 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1355.7197 O75340;A0A024QZ42;H0Y9X3;A0A087WZ38 O75340 126 136 PDCD6 Programmed cell death protein 6 yes no 2;3 0.0003651 70.028 By MS/MS By MS/MS By MS/MS 6 3 2 1.0197 0.97522 12.545 11 Median 0.97061 0.91675 15.044 6 1 Median 1.243 1.0303 3.741 3 0 Median 0.95365 0.91635 9.4695 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172560000 81535000 91028000 136840000 64580000 72261000 19126000 8082800 11043000 16596000 8872200 7723700 0 0 0 0 0 0 0 0 0 22692 1659 23671 119697;119698;119699;119700;119701;119702;119703;119704;119705;119706;119707 120800;120801;120802;120803;120804;120805;120806;120807 120806 8 LSDQFHDILIRK DKNELKQALSGFGYRLSDQFHDILIRKFDR GYRLSDQFHDILIRKFDRQGRGQIAFDDFI R L S R K F 0 1 0 2 0 1 0 0 1 2 2 1 0 1 0 1 0 0 0 0 0 0 12 1 1483.8147 O75340;A0A024QZ42;H0Y9X3;A0A087WZ38 O75340 126 137 PDCD6 Programmed cell death protein 6 yes no 3 0.0013232 40.725 By MS/MS 1 0.98659 0.97694 NaN 1 Median 0.98659 0.97694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331600 3115000 3216700 6331600 3115000 3216700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22693 1659 23672 119708 120808;120809 120809 2 LSDTTEYQPILSSYSHR NLEKKPAKSILKSSKLSDTTEYQPILSSYS DTTEYQPILSSYSHRAQEFGVKSAFPPSVR K L S H R A 0 1 0 1 0 1 1 0 1 1 2 0 0 0 1 4 2 0 2 0 0 0 17 0 1995.9538 Q5VT52 Q5VT52 863 879 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 7.1126E-06 57.525 By MS/MS By matching By MS/MS 2 2 2 0.80537 0.86883 21.039 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7079 0.77511 1.7031 2 0 Median 1.2945 1.1298 24.565 2 0 Median 0.80537 0.86883 10.655 2 0 Median NaN NaN NaN 0 0 Median 27368000 15410000 11959000 0 0 0 0 0 0 17268000 10285000 6982400 609770 267830 341940 9490800 4856600 4634200 0 0 0 22694 3110 23673 119709;119710;119711;119712;119713;119714 120810;120811;120812;120813;120814 120811 5 LSDVDANTAIKHEEQSNEDIPIAEQSSK KEQLQSVTTNSGYTRLSDVDANTAIKHEEQ EQSNEDIPIAEQSSKDIPVTAQPSKDVHVV R L S S K D 3 0 2 3 0 2 4 0 1 3 1 2 0 0 1 4 1 0 0 1 0 0 28 1 3067.4582 A6NNK5;Q12888;C9JXV0 A6NNK5 212 239 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3;4 1.2817E-21 73.805 By MS/MS By matching 4 2 0.56876 0.65189 12.543 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54985 0.63325 3.2799 4 1 Median 0.8195 0.79899 6.4685 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55641000 35224000 20418000 0 0 0 0 0 0 53654000 34230000 19424000 1987200 993650 993560 0 0 0 0 0 0 22695 530 23674 119715;119716;119717;119718;119719;119720 120815;120816;120817;120818 120815 4 LSDVFGSVR IFTDVALKFEHQLIKLSDVFGSVRTHGIAV EHQLIKLSDVFGSVRTHGIAVSPCGAYLAI K L S V R T 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 2 0 0 0 2 0 0 9 0 978.51345 Q9UKN8 Q9UKN8 468 476 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.0008527 94.302 By MS/MS 1 1.0249 1.0885 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0249 1.0885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9898300 4532500 5365800 0 0 0 0 0 0 9898300 4532500 5365800 0 0 0 0 0 0 0 0 0 22696 4314 23675 119721 120819;120820 120819 2 LSDVLKPLTDAQVEAMK QPRLAGAGGRKKIFRLSDVLKPLTDAQVEA DVLKPLTDAQVEAMKLGAVKRILRAEKAVA R L S M K L 2 0 0 2 0 1 1 0 0 0 3 2 1 0 1 1 1 0 0 2 0 0 17 1 1856.9918 Q92797;A0A087WUE9;M0R3C7 Q92797 546 562 SYMPK Symplekin yes no 2;3 1.0637E-05 55.261 By matching By MS/MS By matching 1 2 1 0.76755 0.86136 19.703 4 Median 0.83667 0.90575 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77687 0.90459 14.033 2 0 Median 0.66335 0.63189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45559000 24490000 21069000 1353900 710430 643460 0 0 0 44045000 23680000 20366000 159860 100220 59641 0 0 0 0 0 0 22697 3558 23676 119722;119723;119724;119725 120821;120822;120823;120824 120822 4 LSDYDSSEEAIR QRNLCLHLKAEALIKLSDYDSSEEAIRTLD LIKLSDYDSSEEAIRTLDQISDADNIPGLL K L S I R T 1 1 0 2 0 0 2 0 0 1 1 0 0 0 0 3 0 0 1 0 0 0 12 0 1383.6154 Q6PGP7;D6RCE2 Q6PGP7 363 374 TTC37 Tetratricopeptide repeat protein 37 yes no 2 1.147E-10 137.98 By MS/MS By MS/MS By matching 1 2 1 1.2933 1.0974 16.132 4 Median 0.91209 0.85836 NaN 1 1 Median 1.2933 1.0974 1.5176 2 0 Median NaN NaN NaN 0 0 Median 1.4363 1.2649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14560000 6470500 8089500 8562600 4185200 4377400 4852200 1797500 3054700 0 0 0 1145200 487730 657420 0 0 0 0 0 0 22698 3169 23677 119726;119727;119728;119729 120825;120826;120827 120825 3 LSDYLFTLAR QMGETDANVAKFLNRLSDYLFTLARYAAMK KFLNRLSDYLFTLARYAAMKEGNQEKIYMK R L S A R Y 1 1 0 1 0 0 0 0 0 0 3 0 0 1 0 1 1 0 1 0 0 0 10 0 1197.6394 Q96EY8;S4R3P5 Q96EY8 216 225 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 2 0.0079033 47.198 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1.1529 1.1215 25.525 6 Median 0.89799 0.85949 16.688 2 0 Median 1.6249 1.39 NaN 1 0 Median 1.0371 0.99628 NaN 1 0 Median 1.8033 1.4943 NaN 1 0 Median 1.2816 1.2625 NaN 1 0 Median NaN NaN NaN 0 0 Median 45713000 21461000 24252000 24394000 11769000 12625000 149900 59639 90257 15789000 7586200 8202900 2877500 991580 1885900 2503000 1055100 1447900 0 0 0 22699 3645 23678 119730;119731;119732;119733;119734;119735 120828;120829;120830 120828 3 LSDYSIGPNSK QRLLFKGKALADGKRLSDYSIGPNSKLNLV DGKRLSDYSIGPNSKLNLVVKPLEKVLLEE R L S S K L 0 0 1 1 0 0 0 1 0 1 1 1 0 0 1 3 0 0 1 0 0 0 11 0 1179.5772 P11441;Q5HY81 P11441 56 66 UBL4A Ubiquitin-like protein 4A yes no 2 0.039759 28.013 By matching By MS/MS 1 1 0.88115 0.79783 28.443 2 Median 0.69177 0.65248 NaN 1 0 Median 1.1224 0.97556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2994700 1541300 1453400 1829200 1002600 826520 1165500 538680 626830 0 0 0 0 0 0 0 0 0 0 0 0 22700 1965 23679 119736;119737 120831 120831 1 LSEDYGVLK LGPLNIPLLADVTRRLSEDYGVLKTDEGIA ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG R L S L K T 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 9 0 1022.5284 P32119;A6NIW5 P32119 111 119 PRDX2 Peroxiredoxin-2 yes no 2 0.00044777 106.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 2 1 3 1.1686 0.9812 24.948 13 Median 0.9787 0.89938 33.703 3 0 Median 1.1915 0.98961 1.7499 3 2 Plateau 1.1763 1.1033 NaN 1 0 Median 0.94859 0.79672 27.467 2 0 Median 1.3936 1.4257 NaN 1 0 Median 1.3168 1.1073 31.111 3 0 Median 331760000 160640000 171120000 226050000 111700000 114350000 58492000 26248000 32244000 39345000 18879000 20466000 3491500 1721300 1770200 2642400 1276300 1366100 1744700 815460 929210 22701 2215 23680 119738;119739;119740;119741;119742;119743;119744;119745;119746;119747;119748;119749;119750 120832;120833;120834;120835;120836;120837;120838;120839;120840;120841;120842;120843;120844 120841 13 LSEDYGVLKTDEGIAYR LGPLNIPLLADVTRRLSEDYGVLKTDEGIA EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT R L S Y R G 1 1 0 2 0 0 2 2 0 1 2 1 0 0 0 1 1 0 2 1 0 0 17 1 1927.9527 P32119 P32119 111 127 PRDX2 Peroxiredoxin-2 yes yes 2;3 1.1055E-09 101.6 By MS/MS By MS/MS 2 3 1.0736 1.0038 16.101 5 Median 0.91439 0.95013 13.376 2 0 Median 1.1221 1.3393 17.272 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157250000 72960000 84293000 135540000 63921000 71617000 21716000 9039600 12676000 0 0 0 0 0 0 0 0 0 0 0 0 22702 2215 23681 119751;119752;119753;119754;119755 120845;120846;120847;120848;120849;120850;120851 120847 7 LSEEASQALIEAYVDMRK LKDYIAYAHSTIMPRLSEEASQALIEAYVD EASQALIEAYVDMRKIGSSRGMVSAYPRQL R L S R K I 3 1 0 1 0 1 3 0 0 1 2 1 1 0 0 2 0 0 1 1 0 0 18 1 2052.0198 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 652 669 MCM4 DNA replication licensing factor MCM4 yes no 3 0.00072009 31.514 By MS/MS 1 0.97377 1.0079 NaN 1 Median 0.97377 1.0079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1544600 832490 712160 1544600 832490 712160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22703 441 23682 119756 120852 120852 1 LSEEISAPVSER RVLLGGFFALVGLAKLSEEISAPVSERMVR LAKLSEEISAPVSERMVRDEQQCWGPGCWR K L S E R M 1 1 0 0 0 0 3 0 0 1 1 0 0 0 1 3 0 0 0 1 0 0 12 0 1315.662 A0A2R8YCV2;Q8NCS4 A0A2R8YCV2 24 35 ZMYM6NB Uncharacterized protein ZMYM6NB yes no 2 0.001592 51.092 By MS/MS 1 1.3507 1.3708 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3507 1.3708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1549200 608110 941100 0 0 0 0 0 0 1549200 608110 941100 0 0 0 0 0 0 0 0 0 22704 392 23683 119757 120853 120853 1 LSEELSGGR RLQRDLKRTVDARLKLSEELSGGRLKPKPI VDARLKLSEELSGGRLKPKPIDVQVITHHM K L S G R L 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 946.47197 B4DXW1;P61158;Q9P1U1 B4DXW1 298 306 ACTR3;ACTR3B Actin-related protein 3;Actin-related protein 3B yes no 2 0.00069823 103.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1957 1.1636 14.359 5 Median 1.1957 1.1812 NaN 1 0 Median 1.4119 1.2114 26.098 2 0 Median 1.1622 1.1636 NaN 1 0 Median 1.2046 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22025000 10181000 11844000 4345400 2187900 2157500 9562600 3916200 5646400 5802900 2932000 2870900 2314000 1144800 1169100 0 0 0 0 0 0 22705 607 23684 119758;119759;119760;119761;119762 120854;120855;120856;120857;120858;120859;120860;120861;120862;120863 120857 10 LSEEVVVAPNQESGMK MVHADTRSFILKKPKLSEEVVVAPNQESGM SEEVVVAPNQESGMKTADSLRVLSGHLMQT K L S M K T 1 0 1 0 0 1 3 1 0 0 1 1 1 0 1 2 0 0 0 3 0 0 16 0 1715.84 Q6PJT7;H0YJA2;G3V411;G3V4R5 Q6PJT7 474 489 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 2 1.9484E-08 149.49 By MS/MS By matching By MS/MS 1 1 1 0.97691 0.84925 28.48 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53923 0.59483 NaN 1 0 Median 0.97691 0.84925 NaN 1 0 Median 1.0241 1.0446 NaN 1 0 Median NaN NaN NaN 0 0 Median 20604000 10599000 10005000 0 0 0 0 0 0 5097000 3047600 2049400 1190000 580850 609180 14317000 6970500 7346500 0 0 0 22706 3175 23685 119763;119764;119765 120864;120865;120866;120867 120866 4 LSEFDVEMSMR PSKDIRTASTEADKKLSEFDVEMSMREDVY ADKKLSEFDVEMSMREDVYQRIVWLQEKVQ K L S M R E 0 1 0 1 0 0 2 0 0 0 1 0 2 1 0 2 0 0 0 1 0 0 11 0 1342.5897 P52888;K7EKB6 P52888 105 115 THOP1 Thimet oligopeptidase yes no 2 0.0003569 71.349 By MS/MS By matching 1 1 1.092 1.0291 8.5202 2 Median 0.98733 0.96893 NaN 1 0 Median 1.2077 1.093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2911000 1407000 1504000 2520800 1245100 1275700 390170 161930 228250 0 0 0 0 0 0 0 0 0 0 0 0 22707 2460 23686 119766;119767 120868;120869 120868 2 LSEFGIR ISSEEGETEANNHKKLSEFGIRNGSRLQAD TEANNHKKLSEFGIRNGSRLQADDFLQDYT K L S I R N 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 820.4443 Q9UBT2;K7ESK7;U3KQ93 Q9UBT2 506 512 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.00076155 137.5 By MS/MS By MS/MS 1 3 1.1544 0.98754 5.7327 4 Median 0.99273 0.9393 NaN 1 0 Median 1.1857 1.0279 5.4796 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21499000 10335000 11163000 11076000 5518100 5557900 10423000 4817100 5605500 0 0 0 0 0 0 0 0 0 0 0 0 22708 4247 23687 119768;119769;119770;119771 120870;120871;120872;120873 120871 4 LSEFGLIQEK MTAEYACTRKQFNKRLSEFGLIQEKFALMA QFNKRLSEFGLIQEKFALMAQKAYVMESMT R L S E K F 0 0 0 0 0 1 2 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1162.6234 Q9H845;H0Y8Z9 Q9H845 336 345 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.007266 61.962 By MS/MS By MS/MS 1 1 0.012171 0.010515 165.38 2 Median 0.0036055 0.0032655 NaN 1 1 Median 0.041082 0.033859 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1015500000 1006100000 9383900 786840000 781880000 4963800 228670000 224250000 4420100 0 0 0 0 0 0 0 0 0 0 0 0 22709 3988 23688 119772;119773 120874;120875 120875 2 LSEGFSIHTR AIAGEDFAIVASDTRLSEGFSIHTRDSPKC ASDTRLSEGFSIHTRDSPKCYKLTDKTVIG R L S T R D 0 1 0 0 0 0 1 1 1 1 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1145.5829 P20618 P20618 57 66 PSMB1 Proteasome subunit beta type-1 yes yes 2 1.3923E-10 176.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0287 0.98846 11.663 5 Median 1.0612 1.0104 NaN 1 0 Median 1.1701 0.98977 NaN 1 0 Median 0.90562 0.87024 18.014 2 2 Median NaN NaN NaN 0 0 Median 0.98763 0.9856 NaN 1 0 Median NaN NaN NaN 0 0 Median 144530000 71124000 73409000 103290000 50539000 52754000 17702000 8530200 9172300 17947000 9251900 8694700 0 0 0 5592100 2803500 2788600 0 0 0 22710 2081 23689 119774;119775;119776;119777;119778;119779 120876;120877;120878;120879;120880;120881;120882;120883 120877 8 LSEGLAASSR ARDTIQIKDKLKKRRLSEGLAASSRASLDP LKKRRLSEGLAASSRASLDPGGGPQGVPLH R L S S R A 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 0 0 0 0 10 0 989.51417 Q6ZUX3 Q6ZUX3 133 142 FAM179A Protein FAM179A yes yes 2 0.00034691 84.568 By MS/MS By MS/MS 1 1 1.0556 0.98215 9.4851 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2159 1.0503 NaN 1 0 Median 0.91649 0.91844 NaN 1 0 Median NaN NaN NaN 0 0 Median 15330000 7453700 7876700 0 0 0 0 0 0 0 0 0 7036600 3146400 3890200 8293800 4307300 3986500 0 0 0 22711 3202 23690 119780;119781 120884;120885 120885 2 LSEGSQPAEEEEDQETPSR GERRSSRVRQARAAKLSEGSQPAEEEEDQE SQPAEEEEDQETPSRNLRVRADRNLKTEEE K L S S R N 1 1 0 1 0 2 6 1 0 0 1 0 0 0 2 3 1 0 0 0 0 0 19 0 2116.9033 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 181 199 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 6.8737E-10 94.725 By MS/MS By MS/MS 1 1 0.64814 0.69757 22.039 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5387 0.59691 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77981 0.81521 NaN 1 0 Median NaN NaN NaN 0 0 Median 4952200 2873900 2078300 0 0 0 0 0 0 3480000 1884100 1595900 0 0 0 1472100 989800 482340 0 0 0 22712 4560 23691 119782;119783 120886;120887;120888 120886 3 LSEGVTISYK AYNSLSSEVILENGKLSEGVTISYKSYCKN LENGKLSEGVTISYKSYCKNGVNGTGENGR K L S Y K S 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 1 1 0 0 10 0 1095.5812 P05556 P05556 389 398 ITGB1 Integrin beta-1 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS 1 2 1.3521 1.1418 12.873 3 Median 1.1309 1.0925 NaN 1 0 Median 1.4672 1.2604 13.974 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39362000 16057000 23305000 14664000 6714100 7949900 24698000 9343000 15355000 0 0 0 0 0 0 0 0 0 0 0 0 22713 1868 23692 119784;119785;119786 120889;120890;120891;120892 120891 4 LSEIDVSSEGVK AGELQEDSGLCVLARLSEIDVSSEGVKGAK LARLSEIDVSSEGVKGAKSFFEAKVQAINV R L S V K G 0 0 0 1 0 0 2 1 0 1 1 1 0 0 0 3 0 0 0 2 0 0 12 0 1261.6402 Q96C19;H0Y4Y4 Q96C19 177 188 EFHD2 EF-hand domain-containing protein D2 yes no 2 3.9932E-06 109.42 By MS/MS By MS/MS By matching By MS/MS 1 3 1 2 1.7581 1.4823 36.866 7 Median 2.6629 2.415 NaN 1 1 Median 1.7581 1.4823 30.526 3 2 Median 0.95876 0.91318 NaN 1 0 Median 1.4945 1.2442 33.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88825000 27286000 61539000 37656000 10961000 26695000 40573000 12108000 28464000 3391200 1556100 1835100 7205000 2660900 4544100 0 0 0 0 0 0 22714 3613 23693 119787;119788;119789;119790;119791;119792;119793 120893;120894;120895;120896;120897;120898;120899;120900;120901 120896 9 LSEIHHLHPEYVR RPQEDFCFLSSKKYKLSEIHHLHPEYVRVS YKLSEIHHLHPEYVRVSEHFKASMKNFKIE K L S V R V 0 1 0 0 0 0 2 0 3 1 2 0 0 0 1 1 0 0 1 1 0 0 13 0 1628.8423 Q7Z2W4;C9J6P4 Q7Z2W4 730 742 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 4 0.033356 18.731 By MS/MS 2 0.77911 0.78083 28.349 2 Median 0.77911 0.78083 28.349 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3567300 1774500 1792800 3567300 1774500 1792800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22715 3236 23694 119794;119795 120902 120902 1 LSEILYDSTR GTSRRVLFKYRRQTRLSEILYDSTRVSFTY RRQTRLSEILYDSTRVSFTYDETAGVLKTV R L S T R V 0 1 0 1 0 0 1 0 0 1 2 0 0 0 0 2 1 0 1 0 0 0 10 0 1195.6085 Q9P273 Q9P273 1956 1965 TENM3 Teneurin-3 yes yes 2 0.0016573 63.565 By MS/MS By MS/MS 2 2 1.1213 0.9943 4.642 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93143 0.98333 6.461 2 0 Median 1.329 0.9943 4.655 2 0 Median 44315000 21286000 23029000 0 0 0 0 0 0 0 0 0 0 0 0 32105000 16107000 15997000 12210000 5178800 7031500 22716 4217 23695 119796;119797;119798;119799 120903;120904;120905;120906;120907;120908;120909 120908 7 LSEIMEK LLRSEVSSGSARGKKLSEIMEKGQLVPLET SGSARGKKLSEIMEKGQLVPLETVLDMLRD K L S E K G 0 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 7 0 848.43135 Q5T9B7;P00568 Q5T9B7 73 79 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.0073733 89.55 By MS/MS By MS/MS By MS/MS 2 1 1 1.1613 1.0986 21.416 4 Median 0.9195 0.88357 27.804 2 0 Median 1.3299 1.1364 NaN 1 0 Median 1.1684 1.1222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15055000 6944300 8111200 11527000 5429900 6097200 1139700 450170 689530 2388700 1064200 1324500 0 0 0 0 0 0 0 0 0 22717 1825 23696 119800;119801;119802;119803 120910;120911;120912 120910 3 LSEIPLTLHSVSELVR LQDEIAEDYGELGMKLSEIPLTLHSVSELV SEIPLTLHSVSELVRLCLRRSDVQEESEGS K L S V R L 0 1 0 0 0 0 2 0 1 1 4 0 0 0 1 3 1 0 0 2 0 0 16 0 1792.0094 Q9UIG0 Q9UIG0 678 693 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.023899 17.489 By MS/MS By matching 2 1 0.71963 0.7553 36.522 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72861 0.79417 51.487 2 0 Median NaN NaN NaN 0 0 Median 0.71963 0.7553 NaN 1 0 Median NaN NaN NaN 0 0 Median 4815300 2556300 2259000 0 0 0 0 0 0 2383300 1235000 1148300 0 0 0 2432000 1321400 1110700 0 0 0 22718 4290 23697 119804;119805;119806 120913 120913 1 LSEIQALTLTK KNCDISVHLVEVSQKLSEIQALTLTKEKVP VSQKLSEIQALTLTKEKVPLERNAGSPVYM K L S T K E 1 0 0 0 0 1 1 0 0 1 3 1 0 0 0 1 2 0 0 0 0 0 11 0 1215.7075 C9JS27;Q7L592;C9J236;C9JP36 C9JS27 119 129 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 2 0.00068187 64.711 By MS/MS By matching 1 1 1.1509 1.0726 21.552 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89042 0.921 NaN 1 0 Median 1.4876 1.2492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10380000 5190800 5189500 0 0 0 0 0 0 9618500 4904500 4714000 761850 286340 475520 0 0 0 0 0 0 22719 721 23698 119807;119808 120914 120914 1 LSEIVTLAK LACDDLDEAARMVVKLSEIVTLAKQAHVDV ARMVVKLSEIVTLAKQAHVDVKFQLPI___ K L S A K Q 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 9 0 972.58555 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;A0A0U1RQL1 A0A2R8YDQ9 385 393 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.00072961 101.72 By MS/MS By matching By matching 1 1 1 1.532 1.3704 21.703 3 Median 1.1937 1.1088 NaN 1 0 Median 1.6058 1.3704 NaN 1 0 Median 1.532 1.7114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13757000 6711400 7045300 10587000 5441600 5144900 1206500 470170 736300 1963700 799610 1164100 0 0 0 0 0 0 0 0 0 22720 379 23699 119809;119810;119811 120915;120916 120915 2 LSELDDR IMRVNVDKVLERDQKLSELDDRADALQAGA KVLERDQKLSELDDRADALQAGASQFETSA K L S D R A 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 846.40831 J3QRU4;F8WCA0;L7N2F9;P63027;K7ENK9;K7EKX0;F5GZV7;P23763;Q15836 Q15836 43 49 VAMP2;VAMP3;VAMP1 Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 1;Vesicle-associated membrane protein 3 no no 2 0.01596 69.998 By matching By MS/MS By matching 3 2 1 1.2115 1.0331 31.027 6 Median 1.0444 1.0295 38.346 3 0 Median 1.2115 1.0215 2.0907 2 0 Median 1.4536 1.4754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7561500 3356900 4204700 3010200 1434800 1575400 3450500 1523300 1927200 1100800 398770 702050 0 0 0 0 0 0 0 0 0 22721 2974;1095 23700 119812;119813;119814;119815;119816;119817 120917 120917 1 LSELDDRADALQAGASQFETSAAK IMRVNVDKVLERDQKLSELDDRADALQAGA ALQAGASQFETSAAKLKRKYWWKNCKMWAI K L S A K L 6 1 0 3 0 2 2 1 0 0 3 1 0 1 0 3 1 0 0 0 0 0 24 1 2493.1983 J3QRU4;F8WCA0;L7N2F9;P63027;K7ENK9;K7EKX0;Q15836 Q15836 43 66 VAMP2;VAMP3 Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 3 no no 3 1.7886E-13 76.889 By MS/MS 1 2.0477 2.1227 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0477 2.1227 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13020000 4907800 8111900 0 0 0 0 0 0 13020000 4907800 8111900 0 0 0 0 0 0 0 0 0 22722 2974;1095 23701 119818 120918 120918 1 LSELEAALQR AEQRGELAIKDANAKLSELEAALQRAKQDM DANAKLSELEAALQRAKQDMARQLREYQEL K L S Q R A 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1128.6139 P05787;CON__P05787;CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267;CON__Q9H552 P05787 353 362 KRT8 Keratin, type II cytoskeletal 8 no no 2 9.3824E-31 210.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 6 7 6 1.2098 1.0755 26.439 32 Median 0.99666 0.90056 50.896 4 2 Median 1.0624 0.89411 34.715 3 1 Median 1.1822 1.1574 24.221 6 0 Median 1.2747 1.0011 17.149 6 0 Median 1.3481 1.3447 14.327 7 2 Median 1.1596 0.93334 9.488 6 0 Median 4544800000 2034300000 2510600000 814940000 383050000 431880000 151000000 69255000 81741000 1150800000 506380000 644430000 730210000 326780000 403420000 943350000 396300000 547060000 754520000 352490000 402030000 + 22723 750;792 23702 119819;119820;119821;119822;119823;119824;119825;119826;119827;119828;119829;119830;119831;119832;119833;119834;119835;119836;119837;119838;119839;119840;119841;119842;119843;119844;119845;119846;119847;119848;119849;119850 120919;120920;120921;120922;120923;120924;120925;120926;120927;120928;120929;120930;120931;120932;120933;120934;120935;120936;120937;120938;120939;120940;120941;120942;120943;120944;120945;120946;120947;120948;120949;120950;120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961;120962;120963;120964;120965;120966;120967;120968;120969;120970;120971;120972;120973;120974;120975;120976;120977;120978;120979;120980 120927 59 LSELEPGTGDLR PACHQGLLDRETWHKLSELEPGTGDLRFLD WHKLSELEPGTGDLRFLDPNTLERLTYHQL K L S L R F 0 1 0 1 0 0 2 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1285.6514 P58107;A0A075B730 P58107 188 199 EPPK1 Epiplakin yes no 2 1.2864E-10 130.98 By MS/MS By MS/MS By matching By matching By MS/MS By matching 3 3 1 2 2 1 1.2179 1.0182 20.809 11 Median 1.2295 1.1748 2.438 2 1 Median 1.2632 1.0105 18.776 3 2 Plateau 0.62971 0.59165 NaN 1 0 Median 1.1686 1.0213 12.972 2 0 Median 0.90843 0.9523 11.597 2 1 Median 1.2179 1.0182 NaN 1 0 Median 91635000 41877000 49758000 40710000 17485000 23225000 31056000 13297000 17759000 7974900 4937200 3037800 1225300 625510 599830 10032000 5292900 4738700 637260 240040 397220 22724 2520 23703 119851;119852;119853;119854;119855;119856;119857;119858;119859;119860;119861;119862 120981;120982;120983;120984;120985;120986;120987 120984 7 LSELLPEEVEAEVK CLQKVGDRKNYASAKLSELLPEEVEAEVKA KLSELLPEEVEAEVKAAAEISMGTEVSEED K L S V K A 1 0 0 0 0 0 5 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1583.8294 Q9Y2X3;H7BZ72 Q9Y2X3 222 235 NOP58 Nucleolar protein 58 yes no 2 6.5451E-08 101.93 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 3 0.98746 0.84742 22.015 10 Median NaN NaN NaN 0 0 Median 0.98366 0.82946 NaN 1 0 Median 0.97454 0.94305 NaN 1 0 Median 0.86259 0.71813 48.645 2 0 Median 0.8303 0.79311 19.683 3 0 Median 1.0507 0.86577 14.1 3 0 Median 56625000 28205000 28421000 0 0 0 102500 41472 61026 24780000 11754000 13026000 963450 482410 481040 24357000 12927000 11430000 6421700 2999200 3422500 22725 4396 23704 119863;119864;119865;119866;119867;119868;119869;119870;119871;119872 120988;120989;120990;120991;120992;120993;120994;120995;120996;120997 120990 10 LSELQETSEQAQSK ETDLLRGQLTKVQAKLSELQETSEQAQSKF KLSELQETSEQAQSKFKSEKQNRKQLELKV K L S S K F 1 0 0 0 0 3 3 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 14 0 1576.758 Q5T1M5 Q5T1M5 694 707 FKBP15 FK506-binding protein 15 yes yes 2 2.5489E-05 136.48 By matching By MS/MS 1 1 1.0376 0.94092 26.101 2 Median 0.832 0.78235 NaN 1 0 Median 1.2939 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3975300 1731400 2243900 1416200 773060 643110 2559100 958370 1600700 0 0 0 0 0 0 0 0 0 0 0 0 22726 3079 23705 119873;119874 120998;120999 120999 2 LSELQLR GEHANDYAEIAAKDKLSELQLRVRQLVEQV AEIAAKDKLSELQLRVRQLVEQVEQIQKEQ K L S L R V 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 857.49707 Q9BVK6 Q9BVK6 161 167 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 0.034637 76.847 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22727 3856 23706 119875 121000 121000 1 LSELSNSQQSVQTLSLWLIHHR ______________________________ QQSVQTLSLWLIHHRKHAGPIVSVWHRELR K L S H R K 0 1 1 0 0 3 1 0 2 1 5 0 0 0 0 5 1 1 0 1 0 0 22 0 2575.3507 Q9NQG5;E9PIQ9;E9PQF3;Q96P16;A0A0C4DGQ6;K7EQR8 Q9NQG5 13 34 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A no no 4 0.0001936 28.813 By MS/MS By matching By matching 1 1 3 1.2731 1.0298 7.7287 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94904 0.9394 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92721 0.97276 NaN 1 0 Median 1.297 1.091 4.7495 3 0 Median 14827000 7156600 7670600 0 0 0 0 0 0 5758000 2807200 2950800 0 0 0 4423600 2444800 1978800 4645700 1904700 2741000 22728 4062;3709 23707 119876;119877;119878;119879;119880 121001 121001 1 LSENAGIQSLLLSK NLVDSLGYNALHYSKLSENAGIQSLLLSKI KLSENAGIQSLLLSKISQDADLKTPTKPKQ K L S S K I 1 0 1 0 0 1 1 1 0 1 4 1 0 0 0 3 0 0 0 0 0 0 14 0 1471.8246 Q9P0K7 Q9P0K7 227 240 RAI14 Ankycorbin yes yes 2 0.00094967 54.471 By MS/MS By matching By matching By matching 2 1 1 1 0.88565 0.91584 16.71 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75884 0.80746 10.407 2 0 Median 1.3971 1.1793 NaN 1 0 Median 0.88565 0.91584 NaN 1 0 Median 1.1816 0.99293 NaN 1 0 Median 14207000 7551700 6654900 0 0 0 0 0 0 9189900 4958900 4231000 1683300 713290 970010 3044700 1754500 1290200 288820 125110 163710 22729 4204 23708 119881;119882;119883;119884;119885 121002 121002 1 LSENNIQTIFAVTEEFQPVYK SHYYDYPSIAHLVQKLSENNIQTIFAVTEE QTIFAVTEEFQPVYKELKNLIPKSAVGTLS K L S Y K E 1 0 2 0 0 2 3 0 0 2 1 1 0 2 1 1 2 0 1 2 0 0 21 0 2469.2428 P05556 P05556 326 346 ITGB1 Integrin beta-1 yes yes 3 0.057448 7.8971 By MS/MS By matching 1 1 0.71439 0.67509 1.0159 2 Median 0.6741 0.67996 NaN 1 0 Median 0.75708 0.67026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1476800 826650 650100 1289800 721110 568720 186930 105550 81384 0 0 0 0 0 0 0 0 0 0 0 0 22730 1868 23709 119886;119887 121003 121003 1 LSENVIDR EADENENITVVKGIRLSENVIDRMKESSPS TVVKGIRLSENVIDRMKESSPSGSKSQRYS R L S D R M 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 C9JRZ6;F8WAR4;Q9NX63 C9JRZ6 28 35 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.00039246 154.31 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.3137 1.0574 19.159 5 Median 0.96129 0.9128 NaN 1 0 Median 1.0387 0.86392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3975 1.1565 NaN 1 1 Median 1.4127 1.3941 NaN 1 0 Median 1.3137 1.0574 NaN 1 0 Median 35860000 17244000 18616000 17265000 8805100 8459800 8525100 4256700 4268500 0 0 0 1809200 684520 1124700 2848200 1182100 1666100 5412200 2315400 3096800 22731 720 23710 119888;119889;119890;119891;119892 121004;121005;121006;121007;121008 121004 5 LSEPEEELLQQFK GSNHTYLKNTYNKPKLSEPEEELLQQFKRE PKLSEPEEELLQQFKREEVSPTGSFSAHYL K L S F K R 0 0 0 0 0 2 4 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 13 0 1588.7985 Q9Y2U8 Q9Y2U8 446 458 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 1.3365E-06 94.692 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22732 4392 23711 119893 121009 121009 1 LSEPVPQTNAHESK HYQQVPLRCNEFEMRLSEPVPQTNAHESKE RLSEPVPQTNAHESKEWYHASLTRAQAEHM R L S S K E 1 0 1 0 0 1 2 0 1 0 1 1 0 0 2 2 1 0 0 1 0 0 14 0 1535.758 P19174 P19174 653 666 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 3 0.065515 10.281 By MS/MS 1 1.2534 1.0926 NaN 1 Median NaN NaN NaN 0 0 Median 1.2534 1.0926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2845500 1600500 1245000 0 0 0 2845500 1600500 1245000 0 0 0 0 0 0 0 0 0 0 0 0 22733 2062 23712 119894 121010 121010 1 LSEQELQFR EQELKSEFEQNLSEKLSEQELQFRRLSQEQ QNLSEKLSEQELQFRRLSQEQVDNFTLDIN K L S F R R 0 1 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1148.5826 Q16891;B9A067;C9J406;H7C463 Q16891 517 525 IMMT MICOS complex subunit MIC60 yes no 2 7.3873E-16 183.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.49 1.347 12.537 2 Median 1.3042 1.2327 NaN 1 0 Median 1.7024 1.4719 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71523000 31782000 39741000 55271000 27076000 28195000 16252000 4705300 11546000 0 0 0 0 0 0 0 0 0 0 0 0 22734 3001 23713 119895;119896;119897;119898;119899 121011;121012;121013;121014;121015;121016;121017 121012 7 LSEQELQFRR EQELKSEFEQNLSEKLSEQELQFRRLSQEQ NLSEKLSEQELQFRRLSQEQVDNFTLDINT K L S R R L 0 2 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 10 1 1304.6837 Q16891;B9A067;C9J406;H7C463 Q16891 517 526 IMMT MICOS complex subunit MIC60 yes no 3 0.0024183 44.309 By MS/MS By MS/MS 2 1 1.6155 1.4604 12.981 3 Median 1.5579 1.6181 16.338 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6155 1.4604 NaN 1 0 Median 6879200 2927000 3952200 5754200 2424900 3329300 0 0 0 0 0 0 0 0 0 0 0 0 1125000 502130 622900 22735 3001 23714 119900;119901;119902 121018;121019 121019 2 LSESDYEKLNVSK EKELLVKESESLQARLSESDYEKLNVSKAL ARLSESDYEKLNVSKALEAALVEKGEFALR R L S S K A 0 0 1 1 0 0 2 0 0 0 2 2 0 0 0 3 0 0 1 1 0 0 13 1 1510.7515 P49454 P49454 2079 2091 CENPF Centromere protein F yes yes 3 0.0016813 56.482 By MS/MS 2 0.70639 0.80127 7.6877 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70639 0.80127 7.6877 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16769000 9080600 7688200 0 0 0 0 0 0 16769000 9080600 7688200 0 0 0 0 0 0 0 0 0 22736 2383 23715 119903;119904 121020;121021 121020 2 LSESQLSFR YGSDRRLAELSDYRRLSESQLSFRRSPTKS LSDYRRLSESQLSFRRSPTKSSLDYRRLPD R L S F R R 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 9 0 1065.5455 Q96PK6 Q96PK6 617 625 RBM14 RNA-binding protein 14 yes yes 2 7.5354E-07 160.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 6 2 1.2585 1.0995 10.292 17 Median NaN NaN NaN 0 0 Median 1.2811 1.061 2.1285 2 0 Median 1.0378 1.0418 14.556 3 0 Median 1.4023 1.1041 4.4882 4 0 Median 1.1296 1.1849 10.96 6 0 Median 1.4056 1.0958 9.7378 2 0 Median 167280000 76918000 90361000 0 0 0 5774100 2640700 3133400 57031000 27047000 29984000 15035000 6108900 8926500 79289000 36639000 42650000 10150000 4482700 5667500 22737 3712 23716 119905;119906;119907;119908;119909;119910;119911;119912;119913;119914;119915;119916;119917;119918;119919;119920;119921 121022;121023;121024;121025;121026;121027;121028;121029;121030;121031;121032;121033;121034;121035;121036;121037;121038;121039;121040;121041;121042;121043 121023 21 LSEVDIDDDERPHNPHK IFGKVTGDTVYNMLRLSEVDIDDDERPHNP EVDIDDDERPHNPHKIKSCEVLFNPFDDII R L S H K I 0 1 1 4 0 0 2 0 2 1 1 1 0 0 2 1 0 0 0 1 0 0 17 1 2014.9344 Q6UX04;D6REK3 Q6UX04 144 160 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 4 0.060153 9.7492 By MS/MS By matching 1 1 0.52427 0.56583 65.81 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80732 0.90112 NaN 1 0 Median 0.34046 0.35529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3903600 1954500 1949200 0 0 0 0 0 0 3531000 1758900 1772000 372650 195520 177130 0 0 0 0 0 0 22738 3189 23717 119922;119923 121044;121045 121045 2 LSEVEEAQEASMETDPKP STIHELQQTLENDEKLSEVEEAQEASMETD VEEAQEASMETDPKP_______________ K L S K P - 2 0 0 1 0 1 5 0 0 0 1 1 1 0 2 2 1 0 0 1 0 0 18 1 1988.8885 Q6I9Y2;A0A024R341 Q6I9Y2 187 204 THOC7;NIF3L1BP1 THO complex subunit 7 homolog yes no 2 7.2992E-06 65.563 By MS/MS 1 0.54997 0.51543 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54997 0.51543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11884000 7483300 4401100 0 0 0 0 0 0 11884000 7483300 4401100 0 0 0 0 0 0 0 0 0 22739 3136 23718 119924 121046;121047 121046 2 LSEVLQAVTDHDIPQQLVER HCTNAYMLVYIRESKLSEVLQAVTDHDIPQ QAVTDHDIPQQLVERLQEEKRIEAQKRKER K L S E R L 1 1 0 2 0 3 2 0 1 1 3 0 0 0 1 1 1 0 0 3 0 0 20 0 2289.1965 Q93009;H3BND8 Q93009 524 543 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 1.5893E-19 118.46 By MS/MS By MS/MS 4 2 0.86224 0.87493 8.4539 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82354 0.89352 6.3811 4 2 Median 0.95717 0.81033 9.4299 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48021000 25213000 22807000 0 0 0 0 0 0 46118000 24312000 21806000 1902900 901140 1001700 0 0 0 0 0 0 22740 3574 23719 119925;119926;119927;119928;119929;119930 121048;121049;121050;121051;121052;121053;121054;121055 121048 8 LSEVQASEAEMR EQKEKKSQRAEMLQKLSEVQASEAEMRLFY LQKLSEVQASEAEMRLFYTTSKLGTGNRMY K L S M R L 2 1 0 0 0 1 3 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 12 0 1348.6293 Q8IY37 Q8IY37 100 111 DHX37 Probable ATP-dependent RNA helicase DHX37 yes yes 2 7.8154E-06 121.83 By MS/MS 1 1.0485 1.1534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0485 1.1534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4483200 2151600 2331600 0 0 0 0 0 0 4483200 2151600 2331600 0 0 0 0 0 0 0 0 0 22741 3336 23720 119931 121056;121057 121056 2 LSFAVPFR DEMMKSYVAWDREKRLSFAVPFREMKPVIF AWDREKRLSFAVPFREMKPVIFLDVFLPRV R L S F R E 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 8 0 935.52289 P78527 P78527 892 899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0023071 111.73 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 2 2 1 0.88698 0.89692 12.762 13 Median 0.88698 0.85771 8.4992 3 0 Median 1.2117 0.96839 NaN 1 0 Median 0.82192 0.87381 14.615 4 0 Median 1.2323 1.0732 8.5489 2 0 Median 0.84157 0.87926 1.8843 2 0 Median 1.3054 1.091 NaN 1 0 Median 242020000 125670000 116350000 55020000 29960000 25060000 37053000 16840000 20212000 127990000 68194000 59794000 7347500 3144800 4202700 13418000 7001300 6417100 1197500 534110 663420 22742 2647 23721 119932;119933;119934;119935;119936;119937;119938;119939;119940;119941;119942;119943;119944 121058;121059;121060;121061;121062;121063;121064;121065;121066;121067;121068;121069;121070;121071;121072;121073;121074 121065 17 LSFDKDAMVAR LKKIPGRVSTEVDARLSFDKDAMVARARRL VDARLSFDKDAMVARARRLIELYKEAGISK R L S A R A 2 1 0 2 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 11 1 1251.6282 P37837;F2Z393 P37837 111 121 TALDO1 Transaldolase yes no 2;3 6.5938E-05 101.38 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 1 1.2379 1.1914 26.233 14 Median 1.1849 1.1981 24.98 5 1 Median 1.4426 1.3501 30.993 6 3 Median 0.92996 1.0094 22.644 2 0 Median 1.4504 1.2727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 391940000 161300000 230630000 242590000 102650000 139940000 127210000 51001000 76212000 20882000 7162900 13719000 1257400 493370 764000 0 0 0 0 0 0 22743 2270 23722 119945;119946;119947;119948;119949;119950;119951;119952;119953;119954;119955;119956;119957;119958 121075;121076;121077;121078;121079;121080;121081;121082;121083;121084;121085;121086;121087;121088;121089;121090;121091;121092;121093 121076 19 LSFEDFVTMTASR EAFREKDTAVQGNIRLSFEDFVTMTASRML IRLSFEDFVTMTASRML_____________ R L S S R M 1 1 0 1 0 0 1 0 0 0 1 0 1 2 0 2 2 0 0 1 0 0 13 0 1502.7075 Q9UBV8 Q9UBV8 270 282 PEF1 Peflin yes yes 2 0.0021913 48.741 By MS/MS By matching 2 1 1.8022 1.5048 24.716 3 Plateau NaN NaN NaN 0 0 Median 1.4834 1.249 26.353 2 0 Median 1.6865 1.6546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4323500 1644700 2678800 0 0 0 4068300 1557200 2511100 255230 87522 167700 0 0 0 0 0 0 0 0 0 22744 4251 23723 119959;119960;119961 121094 121094 1 LSFGDAAQTLWAR IYDSETLQADHFNTRLSFGDAAQTLWARTG TRLSFGDAAQTLWARTGYLGFVRRTELTAA R L S A R T 3 1 0 1 0 1 0 1 0 0 2 0 0 1 0 1 1 1 0 0 0 0 13 0 1434.7256 Q9P265 Q9P265 1422 1434 DIP2B Disco-interacting protein 2 homolog B yes yes 2 0.0040594 42.001 By matching By MS/MS By matching 1 2 2 0.97249 0.94603 19.744 5 Median 1.0591 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71169 0.78055 27.193 2 0 Median 1.0719 0.94164 11.763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3583900 1774600 1809400 1739200 822010 917140 0 0 0 1619600 841510 778120 225130 111030 114100 0 0 0 0 0 0 22745 4215 23724 119962;119963;119964;119965;119966 121095 121095 1 LSFGLEDEPLETATK SAGSVSKQFEGLADKLSFGLEDEPLETATK LSFGLEDEPLETATKEN_____________ K L S T K E 1 0 0 1 0 0 3 1 0 0 3 1 0 1 1 1 2 0 0 0 0 0 15 0 1648.8196 O94905;E5RHW4 O94905 323 337 ERLIN2 Erlin-2 yes no 2 0.0055929 47.288 By MS/MS By MS/MS 1 1 0.77322 0.7404 34.9 2 Median NaN NaN NaN 0 0 Median 1.1068 0.94764 NaN 1 0 Median 0.54015 0.57848 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8799600 5099100 3700500 0 0 0 4940900 2542200 2398600 3858700 2556800 1301900 0 0 0 0 0 0 0 0 0 22746 848 23725 119967;119968 121096;121097 121096 2 LSFHQTQVSQR LTKDVLLDVAYAYGKLSFHQTQVSQRLATD AYGKLSFHQTQVSQRLATDLLSLMPSLTSG K L S Q R L 0 1 0 0 0 3 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1329.6789 Q969Z0;C9IZN7 Q969Z0 305 315 TBRG4 Protein TBRG4 yes no 2;3 5.2936E-05 75.416 By MS/MS By MS/MS 2 1 1.345 1.0818 14.805 3 Plateau 1.124 1.0765 0.70397 2 1 Median 1.6091 1.3909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34857000 14770000 20088000 17120000 7969400 9150900 17737000 6800200 10937000 0 0 0 0 0 0 0 0 0 0 0 0 22747 3591 23726 119969;119970;119971 121098;121099;121100 121098 3 LSFISEGEIK LKEKNFQPRISYPAKLSFISEGEIKYFIDK SYPAKLSFISEGEIKYFIDKQMLRDFVTTR K L S I K Y 0 0 0 0 0 0 2 1 0 2 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1121.5968 Q9UN81 Q9UN81 286 295 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 0.01948 37.344 By matching By MS/MS By matching 1 1 1 1.1302 1.1476 24.766 3 Median 1.1302 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0595 1.1476 NaN 1 0 Median 1.9628 1.6801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9390400 4498200 4892200 6153900 2894600 3259300 0 0 0 3042800 1545500 1497400 193610 58067 135540 0 0 0 0 0 0 22748 4340 23727 119972;119973;119974 121101 121101 1 LSFISVGNK SSTNNNKDTKQKAGKLSFISVGNKFKTQLN KQKAGKLSFISVGNKFKTQLNLLLDKLRST K L S N K F 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 2 0 0 0 1 0 0 9 0 963.53893 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 638 646 MYO6 Unconventional myosin-VI yes no 2 0.0016231 79.474 By MS/MS By matching By matching By matching 1 1 1 1 1.1515 1.0587 20.607 4 Median 0.94708 0.92255 NaN 1 0 Median 1.5053 1.2777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79073 0.83797 NaN 1 0 Median 1.4 1.2149 NaN 1 0 Median 14381000 5970900 8410000 5649000 2790300 2858700 6659800 2212600 4447300 0 0 0 0 0 0 1889900 891080 998830 182140 77010 105130 22749 164 23728 119975;119976;119977;119978 121102 121102 1 LSFPSIKPDTDQTLKK RWRKKRRAHPPEDPRLSFPSIKPDTDQTLK SFPSIKPDTDQTLKKEGLISQDGSSLEALL R L S K K E 0 0 0 2 0 1 0 0 0 1 2 3 0 1 2 2 2 0 0 0 0 0 16 2 1816.9935 Q92785;J3KMZ8 Q92785 93 108 DPF2 Zinc finger protein ubi-d4 yes no 4 4.2049E-05 60.489 By MS/MS By MS/MS 1 1 0.67868 0.72064 5.2894 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59182 0.69418 NaN 1 0 Median 0.77828 0.7481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24952000 16518000 8433900 0 0 0 0 0 0 16522000 11235000 5287000 8430000 5283100 3146900 0 0 0 0 0 0 22750 1299 23729 119979;119980 121103;121104;121105;121106 121106 4 LSFQHDPETSVLVLR PAAVVLQTKGSPESRLSFQHDPETSVLVLR LSFQHDPETSVLVLRKPGINVASDWSIHLR R L S L R K 0 1 0 1 0 1 1 0 1 0 3 0 0 1 1 2 1 0 0 2 0 0 15 0 1739.9206 E9PKU7;Q14697;F5H6X6 Q14697 915 929 GANAB Neutral alpha-glucosidase AB no no 2;3 2.3951E-05 81.311 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 8 8 1 1 1 2 0.97888 0.88029 35.678 21 Median 0.84688 0.82964 49.464 8 1 Median 1.0215 0.88262 5.1659 8 0 Median 0.91396 0.97245 NaN 1 0 Median 1.2342 1.0548 NaN 1 0 Median 1.3983 1.4841 NaN 1 0 Median 1.2041 0.97766 11.36 2 0 Median 226110000 112690000 113420000 159210000 82250000 76955000 56083000 25498000 30585000 7330800 3650400 3680400 762500 329020 433480 2308700 797350 1511400 420380 167870 252510 22751 2896;951 23730 119981;119982;119983;119984;119985;119986;119987;119988;119989;119990;119991;119992;119993;119994;119995;119996;119997;119998;119999;120000;120001 121107;121108;121109;121110;121111;121112;121113;121114;121115;121116;121117;121118;121119;121120;121121 121121 15 LSFSVSR VLHNGLGRYVQQLQRLSFSVSRDGASSRGA RYVQQLQRLSFSVSRDGASSRGAREFVERE R L S S R D 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 3 0 0 0 1 0 0 7 0 794.42865 H0Y6Y8;B1AL05;Q8N983;M0R051 H0Y6Y8 26 32 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.028142 67.032 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1719500 0 1719500 0 0 0 0 0 0 1719500 0 1719500 0 0 0 0 0 0 0 0 0 22752 570 23731 120002 121122 121122 1 LSFVTVDSNLR LTGKGATEITTTITKLSFVTVDSNLRRGIP TITKLSFVTVDSNLRRGIPFTGKVLLVDGK K L S L R R 0 1 1 1 0 0 0 0 0 0 2 0 0 1 0 2 1 0 0 2 0 0 11 0 1249.6667 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 350 360 yes yes 2 0.025296 33.19 By MS/MS 1 0.39339 0.38467 NaN 1 Median 0.39339 0.38467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3352900 2465300 887580 3352900 2465300 887580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22753 734 23732 120003 121123 121123 1 LSFVTVDSNLRR LTGKGATEITTTITKLSFVTVDSNLRRGIP ITKLSFVTVDSNLRRGIPFTGKVLLVDGKG K L S R R G 0 2 1 1 0 0 0 0 0 0 2 0 0 1 0 2 1 0 0 2 0 0 12 1 1405.7678 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 350 361 yes yes 2;3 7.5541E-16 147.37 By MS/MS 2 0.10747 0.11493 29.989 2 Median 0.10747 0.11493 29.989 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13135000 11534000 1600500 13135000 11534000 1600500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 22754 734 23733 120004;120005 121124;121125 121125 2 LSFYETGEIPR TSVFGEKLREQVEERLSFYETGEIPRKNLD VEERLSFYETGEIPRKNLDVMKEAMVQAEE R L S P R K 0 1 0 0 0 0 2 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 0 1310.6507 O00567;A0A494C128;H0YDU4;H0Y653 O00567 405 415 NOP56 Nucleolar protein 56 yes no 2 0.0001134 121.73 By MS/MS By MS/MS By MS/MS By matching 1 1 5 3 0.95138 0.9427 13.255 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96142 0.96733 NaN 1 1 Median 1.1005 0.91869 NaN 1 0 Median 0.83314 0.82146 12.6 5 2 Median 1.2517 1.0154 5.9543 3 0 Median 103130000 54981000 48152000 0 0 0 0 0 0 39410000 20104000 19306000 1799900 808150 991720 56681000 31581000 25100000 5241100 2487300 2753900 22755 1472 23734 120006;120007;120008;120009;120010;120011;120012;120013;120014;120015 121126;121127;121128;121129;121130;121131;121132;121133;121134 121129 9 LSFYETGEIPRK TSVFGEKLREQVEERLSFYETGEIPRKNLD EERLSFYETGEIPRKNLDVMKEAMVQAEEA R L S R K N 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 12 1 1438.7456 O00567;A0A494C128;H0YDU4;H0Y653 O00567 405 416 NOP56 Nucleolar protein 56 yes no 2;3 0.00015147 88.681 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 5 2 0.89953 0.97144 37.081 10 Median 1.3994 1.4035 NaN 1 0 Median 2.5907 2.5224 NaN 1 0 Median 1.0349 1.0992 11.392 2 0 Median NaN NaN NaN 0 0 Median 0.84309 0.86058 12.58 5 1 Median 1.3662 1.207 NaN 1 0 Median 68036000 34126000 33910000 3031800 1178700 1853200 1242800 280620 962200 17424000 8417600 9006400 0 0 0 46032000 24112000 21920000 304570 136960 167610 22756 1472 23735 120016;120017;120018;120019;120020;120021;120022;120023;120024;120025;120026 121135;121136;121137;121138;121139;121140;121141;121142;121143;121144 121135 10 LSGGGDWHIAYVLLYGPR DDDKVSIVTPEDILRLSGGGDWHIAYVLLY GGDWHIAYVLLYGPRRVEIMEEESEQ____ R L S P R R 1 1 0 1 0 0 0 4 1 1 3 0 0 0 1 1 0 1 2 1 0 0 18 0 1973.0159 A6NJA2;P54578 A6NJA2 420 437 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 3 0.0047581 25.167 By matching By MS/MS 1 2 1.0054 0.97381 10.467 3 Median 1.0054 1.0197 NaN 1 0 Median 1.0294 0.90172 10.877 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2931500 1424000 1507400 1103600 555780 547770 1827900 868270 959650 0 0 0 0 0 0 0 0 0 0 0 0 22757 523 23736 120027;120028;120029 121145 121145 1 LSGGHSLHETSTVLVETVTK HIVGSPFKAKVTGPRLSGGHSLHETSTVLV SLHETSTVLVETVTKSSSSRGSSYSSIPKF R L S T K S 0 0 0 0 0 0 2 2 2 0 3 1 0 0 0 3 4 0 0 3 0 0 20 0 2094.0957 Q14315 Q14315 2597 2616 FLNC Filamin-C yes yes 3;4 4.045E-19 143.57 By MS/MS By MS/MS 4 3 1.1635 1.1212 21.55 7 Median 1.4018 1.3898 9.6348 4 0 Linear 1.0487 0.93466 11.655 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137460000 62286000 75173000 95021000 41720000 53301000 42438000 20566000 21872000 0 0 0 0 0 0 0 0 0 0 0 0 22758 2871 23737 120030;120031;120032;120033;120034;120035;120036 121146;121147;121148;121149;121150;121151;121152 121152 7 LSGGIDFNQPLVITR PQTVILPGPAPWGFRLSGGIDFNQPLVITR LSGGIDFNQPLVITRGRNSLMVSTSI____ R L S T R G 0 1 1 1 0 1 0 2 0 2 2 0 0 1 1 1 1 0 0 1 0 0 15 0 1628.8886 D6RAF1;A0A2R8Y6L7;A0A2U3TZH4;A0A087WYF8;Q53GG5 D6RAF1 17 31 PDLIM3 PDZ and LIM domain protein 3 yes no 2 0.0011321 57.836 By MS/MS 1 3.4282 3.2092 NaN 1 Median 3.4282 3.2092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6642000 1355800 5286200 6642000 1355800 5286200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22759 81 23738 120037 121153 121153 1 LSGGLGAGSCR GSSGLGGGSSRTSCRLSGGLGAGSCRLGSA TSCRLSGGLGAGSCRLGSAGGLGSTLGGSS R L S C R L 1 1 0 0 1 0 0 4 0 0 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1033.4975 CON__Q04695;Q04695;K7EPJ9 CON__Q04695 31 41 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0003569 71.349 By MS/MS By matching By MS/MS 1 1 1 0.90227 0.77462 21.988 3 Median NaN NaN NaN 0 0 Median 0.89262 0.77381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1255 1.1331 NaN 1 0 Median 0.90227 0.77462 NaN 1 0 Median 4049800 1795400 2254400 0 0 0 1686600 876980 809640 0 0 0 0 0 0 876500 377700 498800 1486700 540720 945960 + 22760 768 23739 120038;120039;120040 121154;121155 121154 2 LSGGPSSDLQNHVAAGSGQER APGMNRQQVSLLAQRLSGGPSSDLQNHVAA SDLQNHVAAGSGQERSAGDPSQPRPNPPTF R L S E R S 2 1 1 1 0 2 1 4 1 0 2 0 0 0 1 4 0 0 0 1 0 0 21 0 2065.9777 O14686 O14686 3462 3482 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 4.2115E-12 72.568 By MS/MS By MS/MS By matching 2 2 1 0.76625 0.71763 17.994 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62366 0.66918 25.653 2 0 Median 0.90667 0.79315 14.15 2 0 Median NaN NaN NaN 0 0 Median 0.75858 0.6359 NaN 1 0 Median 44723000 25107000 19615000 0 0 0 0 0 0 35854000 20804000 15050000 7965000 3903500 4061500 0 0 0 904070 400320 503750 22761 1490 23740 120041;120042;120043;120044;120045 121156;121157;121158;121159;121160;121161;121162;121163;121164 121158 9 LSGHQFENYSFK VTYATREEAKIAMEKLSGHQFENYSFKISY MEKLSGHQFENYSFKISYIPDEEVSSPSPP K L S F K I 0 0 1 0 0 1 1 1 1 0 1 1 0 2 0 2 0 0 1 0 0 0 12 0 1455.6783 F8W930;Q9Y6M1 F8W930 146 157 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2;3 5.7632E-06 161.19 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 2 2 3 1 4 1.0835 0.96731 18.06 15 Median 0.95217 0.88697 13.908 3 0 Median 1.1685 1.0069 5.6731 2 0 Median 1.001 1.0101 8.9373 2 0 Median 1.214 1.0327 9.7762 3 0 Median 1.2408 1.1821 NaN 1 0 Median 0.88332 0.72696 10.035 4 0 Median 105370000 52855000 52516000 58128000 30544000 27584000 5191600 1921400 3270300 15186000 7427100 7758800 7813700 3434800 4378900 6716100 2923100 3793000 12336000 6604700 5731300 22762 1088 23741 120046;120047;120048;120049;120050;120051;120052;120053;120054;120055;120056;120057;120058;120059;120060 121165;121166;121167;121168;121169;121170;121171 121167 7 LSGIEER ALPQEHAESPDVRGRLSGIEERYKEVAELT ESPDVRGRLSGIEERYKEVAELTRLRKQAL R L S E R Y 0 1 0 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 802.41848 Q01082;A0A087WUZ3 Q01082 824 830 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0033118 104.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.4029 1.1697 20.641 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89459 0.99099 NaN 1 0 Median 1.2421 1.0945 NaN 1 0 Median 1.5039 1.5719 NaN 1 0 Median 1.6068 1.3396 19.176 2 0 Median 7352500 3436700 3915800 0 0 0 0 0 0 3544100 1813700 1730400 737810 365090 372720 1279400 526030 753360 1791100 731850 1059300 22763 2681 23742 120061;120062;120063;120064;120065 121172;121173;121174;121175;121176 121172 5 LSGLADQMVAR RKGPGQPSSPQRLDRLSGLADQMVARGNLG RLDRLSGLADQMVARGNLGVYQETRERLAM R L S A R G 2 1 0 1 0 1 0 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1159.6019 O95400 O95400 202 212 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 2 0.00042057 101.65 By MS/MS By MS/MS 1 1 0.78349 0.71623 44.779 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53698 0.52184 NaN 1 1 Median 1.1431 0.98303 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69170000 48320000 20850000 0 0 0 0 0 0 43720000 34402000 9318900 25450000 13918000 11532000 0 0 0 0 0 0 22764 1771 23743 120066;120067 121177;121178 121178 2 LSGLEQPQGALQTR TDELWASLEAAAKRKLSGLEQPQGALQTRR KLSGLEQPQGALQTRRRKKKRPGSTSP___ K L S T R R 1 1 0 0 0 3 1 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 14 0 1496.7947 Q6RFH5;E9PS41;H0YFP2 Q6RFH5 360 373 WDR74 WD repeat-containing protein 74 yes no 2 6.6784E-09 109.39 By matching By MS/MS By matching 1 3 1 0.8823 0.84292 25.115 5 Median 0.85651 0.81691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93027 0.94566 27.794 3 0 Median 0.8823 0.76038 NaN 1 0 Median 28582000 13985000 14597000 3916900 2016600 1900300 0 0 0 0 0 0 0 0 0 22218000 10571000 11647000 2447000 1397400 1049700 22765 987 23744 120068;120069;120070;120071;120072 121179;121180;121181;121182;121183 121181 4 LSGLNAFDIAEELVK QKAVDQPRQLFWEKKLSGLNAFDIAEELVK LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K L S V K T 2 0 1 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 15 0 1617.8614 O95983;K7EIE8;A0A087WT34;A0A087X1H1;A0A0A0MTS6 O95983 143 157 MBD3 Methyl-CpG-binding domain protein 3 yes no 2 6.6985E-10 107.85 By matching By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1.0737 0.95937 5.401 6 Median NaN NaN NaN 0 0 Median 1.0786 0.90896 NaN 1 0 Median 1.0575 1.0153 NaN 1 0 Median 1.1572 0.95691 NaN 1 0 Median 1.0042 0.99161 NaN 1 0 Median 1.1052 0.91906 6.4339 2 0 Median 9563700 4638500 4925200 0 0 0 118190 52463 65724 6316800 3119300 3197500 53586 21935 31651 1396000 680100 715880 1679100 764690 914400 22766 1804 23745 120073;120074;120075;120076;120077;120078 121184;121185;121186 121186 3 LSGMPDLSLSFMNPR TVFAEIQGVIDACIKLSGMPDLSLSFMNPR LSGMPDLSLSFMNPRLLDDVSFHPCIRFKR K L S P R L 0 1 1 1 0 0 0 1 0 0 3 0 2 1 2 3 0 0 0 0 0 0 15 0 1663.8062 Q9Y2T2 Q9Y2T2 212 226 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.0087342 31.843 By MS/MS 2 1.1419 0.99776 34.266 2 Median NaN NaN NaN 0 0 Median 1.1419 0.99776 34.266 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1394300 677220 717110 0 0 0 1394300 677220 717110 0 0 0 0 0 0 0 0 0 0 0 0 22767 4391 23746 120079;120080 121187 121187 1 LSGPLKEQYAQEHGLNFQR ALQSRLGADVCAVLRLSGPLKEQYAQEHGL LKEQYAQEHGLNFQRLLDTSTYKEAFRKDM R L S Q R L 1 1 1 0 0 3 2 2 1 0 3 1 0 1 1 1 0 0 1 0 0 0 19 1 2214.1182 Q15126 Q15126 43 61 PMVK Phosphomevalonate kinase yes yes 4 1.7306E-05 47.082 By MS/MS 1 1.0474 1.0905 NaN 1 Median 1.0474 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31664000 14703000 16961000 31664000 14703000 16961000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22768 2931 23747 120081 121188;121189 121189 2 LSGQDVER YMAFGSLLKEGIHIRLSGQDVERGTFSHRH KEGIHIRLSGQDVERGTFSHRHHVLHDQNV R L S E R G 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 902.44576 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 684 691 OGDH 2-oxoglutarate dehydrogenase, mitochondrial no no 2 0.047277 58.815 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22769 912 23748 120082 121190 121190 1 LSGSNPYTTVTPQIINSK IHKEAQRIAESNHIKLSGSNPYTTVTPQII SNPYTTVTPQIINSKWEKVQQLVPKRDHAL K L S S K W 0 0 2 0 0 1 0 1 0 2 1 1 0 0 2 3 3 0 1 1 0 0 18 0 1919 O43707;F5GXS2;H7C144 O43707 605 622 ACTN4 Alpha-actinin-4 yes no 2 1.613E-15 166.45 By MS/MS By matching By MS/MS 2 2 1 0.78278 0.69727 14.471 5 Median 0.84847 0.8058 4.9418 2 0 Median 0.74717 0.65226 9.4373 2 0 Median 0.55026 0.60183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91624000 49990000 41634000 76557000 40727000 35830000 6152100 3591300 2560800 8915600 5671800 3243800 0 0 0 0 0 0 0 0 0 22770 1585 23749 120083;120084;120085;120086;120087 121191;121192;121193;121194;121195;121196;121197 121193 7 LSGTGSAGATIR GLRLIFTDGSRIVFRLSGTGSAGATIRLYI VFRLSGTGSAGATIRLYIDSYEKDVAKINQ R L S I R L 2 1 0 0 0 0 0 3 0 1 1 0 0 0 0 2 2 0 0 0 0 0 12 0 1089.5778 P36871;A0A3B3ITK7 P36871 504 515 PGM1 Phosphoglucomutase-1 yes no 2 3.4438E-06 143.89 By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 1.073 1.0644 34.91 10 Median 1.049 1.0165 13.22 4 0 Median 1.3313 1.1529 3.4154 3 0 Plateau 1.0585 1.117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59898 0.47858 8.5749 2 0 Median 52091000 23561000 28530000 3137400 1706800 1430500 47136000 20898000 26238000 1239300 594020 645280 0 0 0 0 0 0 577510 361590 215920 22771 2262 23750 120088;120089;120090;120091;120092;120093;120094;120095;120096;120097 121198;121199;121200;121201;121202;121203;121204;121205 121201 8 LSGYEEALK LPVDQKCEHKLWKARLSGYEEALKIFQKIK KLWKARLSGYEEALKIFQKIKDEKSPEWSK R L S L K I 1 0 0 0 0 0 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1008.5128 Q14008;E9PQH5 Q14008 25 33 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0033627 82.279 By MS/MS By MS/MS 1 2 2.4348 2.3638 24.031 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5665 2.8241 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2325 1.8803 7.2088 2 0 Median 35452000 11155000 24297000 0 0 0 0 0 0 27588000 8009700 19578000 0 0 0 0 0 0 7864100 3145400 4718700 22772 2850 23751 120098;120099;120100 121206;121207 121206 2 LSHANSAVVLSAVK DDREAQSICERVTPRLSHANSAVVLSAVKV RLSHANSAVVLSAVKVLMKFLELLPKDSDY R L S V K V 3 0 1 0 0 0 0 0 1 0 2 1 0 0 0 3 0 0 0 3 0 0 14 0 1394.7882 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 210 223 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2;3 3.7927E-11 175.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 3 5 2 1.2254 1.1265 19.733 17 Median 1.147 1.1066 11.371 2 1 Median 1.205 1.0531 4.3308 5 0 Median 1.2194 1.3243 4.5689 3 0 Median 1.3255 1.1596 25.397 5 0 Median NaN NaN NaN 0 0 Median 1.2961 1.0752 34.71 2 0 Median 135150000 62585000 72561000 36792000 17151000 19641000 45879000 21424000 24455000 26410000 12965000 13445000 23369000 9880300 13488000 0 0 0 2696800 1165300 1531500 22773 128;2752 23752 120101;120102;120103;120104;120105;120106;120107;120108;120109;120110;120111;120112;120113;120114;120115;120116;120117 121208;121209;121210;121211;121212;121213;121214;121215;121216;121217;121218;121219;121220;121221;121222;121223;121224;121225;121226;121227 121214 20 LSHEGPGSELPAGALYR MKASLASLPPLHVAKLSHEGPGSELPAGAL HEGPGSELPAGALYRKTSQLLETLNQLSTH K L S Y R K 2 1 0 0 0 0 2 3 1 0 3 0 0 0 2 2 0 0 1 0 0 0 17 0 1752.8795 E7EX90;Q14203;E7EWF7 E7EX90 1112 1128 DCTN1 Dynactin subunit 1 yes no 2;3 4.0949E-06 79.022 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 1 2 1 0.75344 0.78422 63.608 9 Median 0.74539 0.70959 71.447 4 1 Median 0.93456 0.78422 NaN 1 0 Median 0.71602 0.78725 NaN 1 0 Median 0.47306 0.42153 91.567 2 0 Median 0.98056 1.0244 NaN 1 0 Median NaN NaN NaN 0 0 Median 100410000 43774000 56638000 71572000 29069000 42503000 7495900 3792900 3703100 13869000 7239000 6630100 2288400 1301800 986600 5185600 2371000 2814600 0 0 0 22774 906 23753 120118;120119;120120;120121;120122;120123;120124;120125;120126 121228;121229;121230;121231;121232;121233;121234;121235;121236;121237;121238 121228 11 LSHETVTIELK ______________________________ FLMKLSHETVTIELKNGTQVHGTITGVDVS K L S L K N 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 1 2 0 0 1 0 0 11 0 1268.6976 P62314;J3QLR7 P62314 10 20 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2;3 3.956E-37 188.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 4 5 5 1.123 1.0213 29.312 26 Median 1.0729 0.99458 9.9157 4 0 Median 1.1917 0.99114 19.583 5 1 Median 1.0186 0.97978 11.099 4 0 Median 1.3367 1.1085 25.665 4 2 Median 1.1226 1.2176 44.047 5 0 Median 1.3467 1.0889 53.912 4 2 Median 953590000 420800000 532790000 44949000 21240000 23709000 163560000 71702000 91860000 499950000 242080000 257870000 22800000 10209000 12591000 48188000 23087000 25101000 174140000 52483000 121660000 22775 2585 23754 120127;120128;120129;120130;120131;120132;120133;120134;120135;120136;120137;120138;120139;120140;120141;120142;120143;120144;120145;120146;120147;120148;120149;120150;120151;120152;120153 121239;121240;121241;121242;121243;121244;121245;121246;121247;121248;121249;121250;121251;121252;121253;121254;121255;121256;121257;121258;121259;121260;121261;121262;121263;121264;121265;121266;121267;121268;121269 121268 31 LSHLKPSSEGLAIVTK KYKQRNGWSHKDLLRLSHLKPSSEGLAIVT SHLKPSSEGLAIVTKYITKGWKEVHELYKE R L S T K Y 1 0 0 0 0 0 1 1 1 1 3 2 0 0 1 3 1 0 0 1 0 0 16 1 1678.9618 P10155 P10155 185 200 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 3 4.1936E-05 61.962 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.90559 0.86199 18.078 6 Median 0.8554 0.81001 1.685 2 0 Median 1.1019 1.0342 22.709 2 0 Median 0.80598 0.84361 NaN 1 0 Median 1.141 1.1405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38901000 19909000 18992000 22604000 11668000 10936000 6675000 3066200 3608800 5644000 3255700 2388200 3977700 1918400 2059300 0 0 0 0 0 0 22776 1934 23755 120154;120155;120156;120157;120158;120159 121270;121271;121272;121273;121274;121275;121276 121274 7 LSHLLSEKPEDK SHDLDSNQAAMVLIRLSHLLSEKPEDKGLL LIRLSHLLSEKPEDKGLLIQDAHFHQLLCL R L S D K G 0 0 0 1 0 0 2 0 1 0 3 2 0 0 1 2 0 0 0 0 0 0 12 1 1394.7405 Q969Z0;C9J7P5;C9J5A2;C9J347 Q969Z0 107 118 TBRG4 Protein TBRG4 yes no 2;3 1.6886E-06 99.844 By MS/MS By MS/MS 1 2 1.1975 1.1184 33.199 3 Median 0.86015 0.8125 NaN 1 0 Median 1.4199 1.3285 24.348 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17067000 7296800 9770400 4835400 2545300 2290100 12232000 4751400 7480300 0 0 0 0 0 0 0 0 0 0 0 0 22777 3591 23756 120160;120161;120162 121277;121278;121279;121280 121279 4 LSHPRHTLS PAGDNPPPRTSCANKLSHPRHTLS______ TSCANKLSHPRHTLS_______________ K L S L S - 0 1 0 0 0 0 0 0 2 0 2 0 0 0 1 2 1 0 0 0 0 0 9 1 1046.5621 Q8NHH1 Q8NHH1 792 800 TTLL11 Tubulin polyglutamylase TTLL11 yes yes 2 0.043605 49.358 By matching By MS/MS 1 1 3.4737 3.2699 119.13 2 Median 1.2786 1.4083 NaN 1 0 Median 9.4376 7.5926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15235000 2454400 12781000 1076200 314810 761390 14159000 2139600 12019000 0 0 0 0 0 0 0 0 0 0 0 0 22778 3443 23757 120163;120164 121281 121281 1 LSHVPPPLFPSAPATLASR ______________________________ PPPLFPSAPATLASRSLSHWRPRPPRQLAP R L S S R S 3 1 0 0 0 0 0 0 1 0 3 0 0 1 5 3 1 0 0 1 0 0 19 0 1957.0785 A0A087WUK2;O14979 A0A087WUK2 7 25 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 3 0.0045658 24.893 By MS/MS By matching 3 1 0.41243 0.41184 11.685 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39606 0.39817 5.6993 3 1 Median 0.56268 0.49695 NaN 1 0 Median 18342000 13180000 5161800 0 0 0 0 0 0 0 0 0 0 0 0 18139000 13038000 5101000 203050 142290 60764 22779 32 23758 120165;120166;120167;120168 121282;121283 121283 2 LSHYLTLLTQR FDKFGEGIIITTHDKLSHYLTLLTQRNPIE THDKLSHYLTLLTQRNPIESQFLESLADNL K L S Q R N 0 1 0 0 0 1 0 0 1 0 4 0 0 0 0 1 2 0 1 0 0 0 11 0 1343.7561 Q8N3C0 Q8N3C0 873 883 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.026689 22.474 By matching By MS/MS 2 2 1.2703 1.178 25.723 4 Median 0.98075 0.98996 18.075 2 0 Median 1.6309 1.4156 19.471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8347600 3366300 4981300 4116500 1728800 2387600 4231200 1637500 2593700 0 0 0 0 0 0 0 0 0 0 0 0 22780 3366 23759 120169;120170;120171;120172 121284 121284 1 LSIAVEQAK LNMDSPEELQSYIQKLSIAVEQAKQKILQA QSYIQKLSIAVEQAKQKILQAEVNLEVDVV K L S A K Q 2 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 957.5495 Q9H9F9 Q9H9F9 364 372 ACTR5 Actin-related protein 5 yes yes 2 0.0045216 60.436 By matching By MS/MS 1 1 0.87541 0.8561 27.391 2 Median NaN NaN NaN 0 0 Median 0.78484 0.70536 NaN 1 0 Median 0.97643 1.0391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4087300 2212500 1874800 0 0 0 944340 596450 347890 3143000 1616000 1527000 0 0 0 0 0 0 0 0 0 22781 3999 23760 120173;120174 121285 121285 1 LSIFDANESGFESYEALPQHK PPDAVDEPQMLTNEKLSIFDANESGFESYE NESGFESYEALPQHKLTCFSVYCKHGHLCP K L S H K L 2 0 1 1 0 1 3 1 1 1 2 1 0 2 1 3 0 0 1 0 0 0 21 0 2381.1176 P26358 P26358 386 406 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 4.617E-12 71.742 By MS/MS By MS/MS 3 1 0.79237 0.86043 4.3439 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79181 0.861 0.20746 3 0 Median 0.86843 0.78979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38139000 19976000 18162000 0 0 0 0 0 0 37301000 19589000 17713000 837120 387700 449410 0 0 0 0 0 0 22782 2142 23761 120175;120176;120177;120178 121286;121287;121288;121289;121290;121291 121287 6 LSILSLLGHVIR LLDRINEYVGKAATRLSILSLLGHVIRLQP ATRLSILSLLGHVIRLQPSWKHKLSQAPLL R L S I R L 0 1 0 0 0 0 0 1 1 2 4 0 0 0 0 2 0 0 0 1 0 0 12 0 1319.8289 A0A2R8Y6S8;A0A2R8Y5J1;A0A2R8Y5Q4;A0A2R8Y6N1;A0A2R8YGL0;A0A2R8Y5F8;Q86WV8;A0A2R8Y7E9;A0A2R8Y6W1;Q59IT9;A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574 A0A2R8Y6S8 87 98 TSC1 Hamartin yes no 2 5.0111E-06 101.11 By MS/MS 1 1.4218 1.1882 NaN 1 Median NaN NaN NaN 0 0 Median 1.4218 1.1882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3576300 1506300 2070000 0 0 0 3576300 1506300 2070000 0 0 0 0 0 0 0 0 0 0 0 0 22783 371 23762 120179 121292 121292 1 LSILYPATTGR TARVVFVFGPDKKLKLSILYPATTGRNFDE KKLKLSILYPATTGRNFDEILRVVISLQLT K L S G R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 11 0 1190.6659 P30041 P30041 145 155 PRDX6 Peroxiredoxin-6 yes yes 2 0.00016096 112.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1.1147 0.9954 11.579 10 Median 1.0693 1.0201 3.845 2 0 Median 1.273 1.0693 6.1085 2 0 Median 0.94683 0.92764 5.8472 2 0 Median 1.1911 0.96701 4.476 2 0 Median 1.2497 1.2765 NaN 1 0 Median 1.088 0.84783 NaN 1 0 Median 688320000 326210000 362120000 579680000 275410000 304270000 60657000 27110000 33547000 37733000 18853000 18880000 3835100 1731900 2103200 3345200 1686700 1658600 3075600 1419500 1656100 22784 2179 23763 120180;120181;120182;120183;120184;120185;120186;120187;120188;120189 121293;121294;121295;121296;121297;121298;121299;121300;121301;121302;121303;121304;121305;121306 121297 14 LSIPTYGLQCTR PIEGSTTVFHSLASRLSIPTYGLQCTRAAP ASRLSIPTYGLQCTRAAPLDSIHSLAAYYI R L S T R A 0 1 0 0 1 1 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1407.718 P49327;A0A0U1RQF0;J3KTF0 P49327 2264 2275 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.011512 36.585 By MS/MS 1 1.3022 1.1128 NaN 1 Median NaN NaN NaN 0 0 Median 1.3022 1.1128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5664000 2365700 3298300 0 0 0 5664000 2365700 3298300 0 0 0 0 0 0 0 0 0 0 0 0 22785 2377 23764 120190 121307;121308 121308 2 LSIQNFSK YYRVMESMLKSEEERLSIQNFSKLLNDNIF LKSEEERLSIQNFSKLLNDNIFHMSLLACA R L S S K L 0 0 1 0 0 1 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 935.50763 A0A3B3IS71;P06400 A0A3B3IS71 468 475 RB1 Retinoblastoma-associated protein yes no 2 0.047721 52.937 By MS/MS 1 0.48143 0.51716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48143 0.51716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6051900 4515200 1536600 0 0 0 0 0 0 6051900 4515200 1536600 0 0 0 0 0 0 0 0 0 22786 421 23765 120191 121309 121309 1 LSISETYDLK LEKKYASSANLHLPKLSISETYDLKSVLGD LHLPKLSISETYDLKSVLGDVGITEVFSDR K L S L K S 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 1 0 1 0 0 0 10 0 1167.6023 CON__P34955 CON__P34955 313 322 yes yes 2 0.0006381 108.98 By MS/MS By MS/MS 2 3 0.10735 0.090201 144.77 5 Median 0.067763 0.062388 233.03 2 2 Median 0.10735 0.090201 120.82 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239610000 229030000 10583000 185360000 177740000 7615400 54251000 51283000 2967800 0 0 0 0 0 0 0 0 0 0 0 0 + 22787 763 23766 120192;120193;120194;120195;120196 121310;121311;121312;121313;121314;121315 121312 6 LSITEVTK NSSNPVLKNMWPEGKLSITEVTKRPLTAAT NMWPEGKLSITEVTKRPLTAATLFKNSMIA K L S T K R 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 2 0 0 1 0 0 8 0 889.51205 K7EIG7;O94832;J3QRN6 K7EIG7 464 471 MYO1D Unconventional myosin-Id yes no 2 0.022368 44.961 By MS/MS By MS/MS 1 3 1.1191 1.199 154.49 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1062 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1294 1.2126 178.6 3 0 Median NaN NaN NaN 0 0 Median 18528000 6925900 11602000 0 0 0 0 0 0 2256100 950220 1305900 0 0 0 16272000 5975700 10296000 0 0 0 22788 1359 23767 120197;120198;120199;120200 121316;121317 121317 2 LSIVPVRR KEVATAIRGAIILAKLSIVPVRRGYWGNKI GAIILAKLSIVPVRRGYWGNKIGKPHTVPC K L S R R G 0 2 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 8 1 938.60253 P15880;H0YEN5;E9PMM9;I3L404;E9PPT0;E9PM36 P15880 160 167 RPS2 40S ribosomal protein S2 yes no 2 0.0033438 122.79 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1.0396 1.0519 11.914 5 Median 0.97709 1.0519 NaN 1 0 Median 1.0396 0.9569 NaN 1 0 Median 0.85674 0.89422 NaN 1 0 Median 1.2667 1.1821 NaN 1 0 Median 1.0626 1.1524 NaN 1 0 Median NaN NaN NaN 0 0 Median 159360000 78314000 81044000 112280000 55753000 56531000 36028000 17363000 18666000 1408700 652220 756460 3077800 1377800 1700000 6558800 3168200 3390600 0 0 0 22789 2020 23768 120201;120202;120203;120204;120205 121318;121319;121320;121321;121322;121323;121324;121325;121326;121327 121320 10 LSIYNALK ANVIAGVWLEEAGQKLSIYNALKKDLLPSD LEEAGQKLSIYNALKKDLLPSDMAVALLEA K L S L K K 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 8 0 920.53312 Q15149;H0YDN1 Q15149 3175 3182 PLEC Plectin yes no 2 0.0058623 84.244 By MS/MS By MS/MS By matching By matching 1 3 2 1 1.5148 1.265 25.998 7 Median 0.8242 0.82425 NaN 1 1 Median 1.5236 1.3375 21.048 3 0 Median NaN NaN NaN 0 0 Median 1.2704 1.0991 19.875 2 0 Median NaN NaN NaN 0 0 Median 1.5507 1.3389 NaN 1 0 Median 22405000 10744000 11660000 7882900 4407700 3475200 8583400 3696300 4887100 0 0 0 5606200 2524300 3082000 0 0 0 332020 115870 216150 22790 2933 23769 120206;120207;120208;120209;120210;120211;120212 121328;121329 121328 2 LSIYNALKK ANVIAGVWLEEAGQKLSIYNALKKDLLPSD EEAGQKLSIYNALKKDLLPSDMAVALLEAQ K L S K K D 1 0 1 0 0 0 0 0 0 1 2 2 0 0 0 1 0 0 1 0 0 0 9 1 1048.6281 Q15149;H0YDN1 Q15149 3175 3183 PLEC Plectin yes no 2 0.0087024 55.531 By matching By matching By matching By matching By MS/MS By MS/MS 2 1 1 1 1 1 1.408 1.4305 10.205 7 Median 1.3288 1.4087 16.183 2 0 Median 1.566 1.493 NaN 1 0 Median 1.2356 1.4029 NaN 1 0 Median 1.408 1.4305 NaN 1 0 Median 1.4407 1.5468 NaN 1 0 Median 1.3524 1.2068 NaN 1 0 Median 34196000 13221000 20975000 13079000 4992700 8086000 6684600 2286400 4398200 5298900 2367400 2931500 566850 229240 337610 5885500 2255500 3630000 2681300 1090100 1591100 22791 2933 23770 120213;120214;120215;120216;120217;120218;120219 121330;121331 121330 2 LSKDPNIVIAK HCKNLEPKYKELGEKLSKDPNIVIAKMDAT LGEKLSKDPNIVIAKMDATANDVPSPYEVR K L S A K M 1 0 1 1 0 0 0 0 0 2 1 2 0 0 1 1 0 0 0 1 0 0 11 1 1196.7129 P30101 P30101 423 433 PDIA3 Protein disulfide-isomerase A3 yes yes 2;3 5.5363E-05 103.21 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 2 1.1265 1.1471 20.657 10 Median 1.0434 0.99442 15.698 4 0 Median 1.454 1.2605 23.017 3 0 Median 1.1089 1.1618 NaN 1 0 Median 1.3474 1.3468 24.49 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72705000 24151000 48554000 31184000 11681000 19503000 33389000 9809000 23580000 4336500 1537700 2798800 3795600 1123900 2671700 0 0 0 0 0 0 22792 2189 23771 120220;120221;120222;120223;120224;120225;120226;120227;120228;120229 121332;121333;121334;121335;121336;121337;121338;121339;121340;121341;121342;121343;121344;121345;121346;121347;121348 121336 17 LSKEDIER TGKENKITITNDKGRLSKEDIERMVQEAEK ITNDKGRLSKEDIERMVQEAEKYKAEDEKQ R L S E R M 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 1 988.51892 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 510 517 HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.0082297 143.01 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 2 1 1.076 1.0777 15.71 9 Median 1.1753 1.1914 14.183 2 0 Median 1.2063 1.1492 22.873 2 0 Median 1.0424 1.11 NaN 1 0 Median 1.0495 0.96227 NaN 1 0 Median 1.0059 1.1228 16.245 2 1 Median 0.97758 0.85397 NaN 1 0 Median 130820000 61374000 69445000 31082000 14328000 16754000 46029000 20342000 25686000 44180000 21719000 22461000 807500 394850 412650 7477500 3985000 3492500 1243200 604790 638390 22793 1950 23772 120230;120231;120232;120233;120234;120235;120236;120237;120238 121349;121350;121351;121352;121353;121354;121355;121356;121357 121351 9 LSKEEIER TGKANKITITNDKGRLSKEEIERMVQEAEK ITNDKGRLSKEEIERMVQEAEKYKAEDEVQ R L S E R M 0 1 0 0 0 0 3 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 1 1002.5346 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;Q53FA3;P34931 A0A0G2JIW1 511 518 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 0.011341 124.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 4 5 2 3 3 1.2557 1.2392 15.194 23 Median 1.2918 1.3221 17.134 6 0 Median 1.1605 1.1045 12.525 4 0 Median 1.2993 1.3715 6.204 5 0 Median 1.1256 1.014 21.227 2 0 Median 1.2675 1.2969 11.436 3 0 Median 1.2557 1.152 4.0803 3 0 Median 313330000 135770000 177560000 76785000 31977000 44808000 123570000 55773000 67801000 86345000 36390000 49955000 3434400 1476100 1958400 19582000 8559900 11022000 3608500 1592500 2016000 22794 278;2229 23773 120239;120240;120241;120242;120243;120244;120245;120246;120247;120248;120249;120250;120251;120252;120253;120254;120255;120256;120257;120258;120259;120260;120261 121358;121359;121360;121361;121362;121363;121364;121365;121366;121367;121368;121369;121370;121371;121372 121370 15 LSKEETVLATVQALQTASHLSQQADLR LPLASQEALSALTARLSKEETVLATVQALQ ALQTASHLSQQADLRSIVEEIEDLVARLDE R L S L R S 4 1 0 1 0 4 2 0 1 0 5 1 0 0 0 3 3 0 0 2 0 0 27 1 2936.5567 P04844 P04844 152 178 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 3;4 6.9571E-20 69.47 By MS/MS By MS/MS By MS/MS 3 6 2 1.0772 1.0775 45.546 11 Median 1.0554 1.0872 4.3217 3 0 Median 1.1443 1.0664 32.516 6 0 Median 0.46468 0.52103 79.501 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82339000 41052000 41287000 12335000 5870100 6465100 44976000 19604000 25372000 25028000 15578000 9449900 0 0 0 0 0 0 0 0 0 22795 1854 23774 120262;120263;120264;120265;120266;120267;120268;120269;120270;120271;120272 121373;121374;121375;121376;121377;121378;121379 121378 7 LSKNEAPEGNLGDFAEFQR LTEIYGERLYETSYRLSKNEAPEGNLGDFA EAPEGNLGDFAEFQRRHSMQTPVRMEWSGI R L S Q R R 2 1 2 1 0 1 3 2 0 0 2 1 0 2 1 1 0 0 0 0 0 0 19 1 2121.0127 Q9UKN8 Q9UKN8 223 241 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 0.00072055 30.767 By MS/MS 1 0.81211 0.92237 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81211 0.92237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3868800 1888000 1980800 0 0 0 0 0 0 3868800 1888000 1980800 0 0 0 0 0 0 0 0 0 22796 4314 23775 120273 121380 121380 1 LSLAQEDLISNR ELLATRQDLKSVEEKLSLAQEDLISNRNQI EEKLSLAQEDLISNRNQIGNQNKLIQELKT K L S N R N 1 1 1 1 0 1 1 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 12 0 1357.7201 Q15075 Q15075 1056 1067 EEA1 Early endosome antigen 1 yes yes 2 0.0021859 77.379 By MS/MS 1 1.3761 1.1743 NaN 1 Median NaN NaN NaN 0 0 Median 1.3761 1.1743 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7667300 3456400 4210900 0 0 0 7667300 3456400 4210900 0 0 0 0 0 0 0 0 0 0 0 0 22797 2926 23776 120274 121381 121381 1 LSLDDLLQR ETMLPLLLTAVSEGRLSLDDLLQRLHHNPR AVSEGRLSLDDLLQRLHHNPRRIFHLPPQE R L S Q R L 0 1 0 2 0 1 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 9 0 1071.5924 F8VPD4;P27708;H7BZB3 F8VPD4 1660 1668 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00067245 105.57 By MS/MS By matching By matching By matching By matching 3 2 1 1 1 1.0898 1.0505 23.187 8 Median 1.267 1.2241 1.8765 3 0 Plateau 0.96872 0.83362 0.38038 2 0 Median 1.3544 1.5088 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92141 0.92806 NaN 1 0 Median 0.93164 0.82386 NaN 1 0 Median 22612000 10417000 12195000 14648000 6347900 8299700 6648700 3423100 3225500 843070 411340 431720 0 0 0 304750 144560 160190 167350 89821 77527 22798 1057 23777 120275;120276;120277;120278;120279;120280;120281;120282 121382;121383;121384;121385 121383 4 LSLDDVQK EDLNKGAKPVVVLQKLSLDDVQKLIKDRED PVVVLQKLSLDDVQKLIKDREDKSRSSLKP K L S Q K L 0 0 0 2 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 916.48656 A0A590UJS4;Q6KC79 A0A590UJS4 1008 1015 NIPBL Nipped-B-like protein yes no 2 0.0055542 75.109 By matching By MS/MS 1 1 1.0974 1.1705 18.304 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9472 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2714 1.3322 NaN 1 0 Median NaN NaN NaN 0 0 Median 8640900 3250900 5390000 0 0 0 0 0 0 3104600 1688900 1415700 0 0 0 5536300 1562000 3974200 0 0 0 22799 488 23778 120283;120284 121386 121386 1 LSLDELHR DMDELKKEVSMDDHKLSLDELHRKYGTDLS VSMDDHKLSLDELHRKYGTDLSRGLTSARA K L S H R K 0 1 0 1 0 0 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 981.52434 P05023;Q5TC01;Q5TC02 P05023 46 53 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 2 9.1103E-15 158.36 By MS/MS By MS/MS 1 6 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22800 1857 23779 120285;120286;120287;120288;120289;120290;120291 121387;121388;121389;121390;121391;121392;121393 121389 7 LSLDELHRK DMDELKKEVSMDDHKLSLDELHRKYGTDLS SMDDHKLSLDELHRKYGTDLSRGLTSARAA K L S R K Y 0 1 0 1 0 0 1 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 9 1 1109.6193 P05023;Q5TC01;Q5TC02 P05023 46 54 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 2 0.0032077 73.248 By MS/MS By matching 3 2 0.85205 0.81314 18.162 5 Median 0.87614 0.89924 19.21 3 0 Plateau 0.95763 0.90261 14.763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16061000 8096700 7964200 9162600 4796300 4366300 6898300 3300400 3597900 0 0 0 0 0 0 0 0 0 0 0 0 22801 1857 23780 120292;120293;120294;120295;120296 121394 121394 1 LSLDGQNIYNACCTLR ALLQYADPVSAQHAKLSLDGQNIYNACCTL SLDGQNIYNACCTLRIDFSKLTSLNVKYNN K L S L R I 1 1 2 1 2 1 0 1 0 1 3 0 0 0 0 1 1 0 1 0 0 0 16 0 1896.8822 A0A0U1RRM4;P26599;A6NLN1;K7EK45;A0A087WU68 A0A0U1RRM4 270 285 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.00072332 43.084 By MS/MS 1 1.1104 1.1177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1104 1.1177 NaN 1 0 Median NaN NaN NaN 0 0 Median 2171500 947190 1224300 0 0 0 0 0 0 0 0 0 0 0 0 2171500 947190 1224300 0 0 0 22802 312 23781 120297 121395 121395 1 LSLDTDAR VDHRRDDPYWSENKKLSLDTDARFGHGSDY YWSENKKLSLDTDARFGHGSDYSRQQNRFN K L S A R F 1 1 0 2 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 889.45051 Q9NWH9;H7C3F4;H0YMM0 Q9NWH9 747 754 SLTM SAFB-like transcription modulator yes no 2 0.0022957 111.01 By MS/MS 1 0.9675 0.99921 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9675 0.99921 NaN 1 0 Median NaN NaN NaN 0 0 Median 8228900 3847200 4381700 0 0 0 0 0 0 0 0 0 0 0 0 8228900 3847200 4381700 0 0 0 22803 4149 23782 120298 121396 121396 1 LSLDVEQAPSGQHSQAQLSGQQQR WEEQLARLLQEAPGKLSLDVEQAPSGQHSQ SGQHSQAQLSGQQQRLLAFFKCCLLTDQLP K L S Q R L 2 1 0 1 0 7 1 2 1 0 3 0 0 0 1 4 0 0 0 1 0 0 24 0 2591.2688 O00411;K7EMH3 O00411 202 225 POLRMT DNA-directed RNA polymerase, mitochondrial yes no 3 1.0454E-16 71.527 By MS/MS By matching By MS/MS 1 1 1 0.85967 0.87475 18.489 3 Median 0.85967 0.82903 NaN 1 0 Median 1.3673 1.1691 NaN 1 0 Median 0.79537 0.87475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18490000 9901700 8588500 8747000 4622400 4124600 2608900 1018900 1590000 7134200 4260300 2873900 0 0 0 0 0 0 0 0 0 22804 1461 23783 120299;120300;120301 121397;121398 121398 2 LSLEADR EARENVKREQDEAYRLSLEADRAKREAHER REQDEAYRLSLEADRAKREAHEREMAEQFR R L S D R A 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 802.41848 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 517 523 FAF1 FAS-associated factor 1 yes no 2 0.016986 67.032 By MS/MS By MS/MS By MS/MS 1 1 1 1.1665 1.0125 41.858 3 Median 1.7591 1.7462 NaN 1 1 Median 1.1665 1.0125 NaN 1 0 Median 0.69051 0.76692 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6786500 3276800 3509800 1312100 483380 828710 3165300 1353600 1811700 2309100 1439800 869330 0 0 0 0 0 0 0 0 0 22805 575 23784 120302;120303;120304 121399;121400;121401 121401 3 LSLEFGDPASSLFR QLPRYIMAGFPVCPKLSLEFGDPASSLFRW KLSLEFGDPASSLFRWYKEAKPGAAEPEVG K L S F R W 1 1 0 1 0 0 1 1 0 0 3 0 0 2 1 3 0 0 0 0 0 0 14 0 1537.7777 F6T1Q0;Q6L8Q7 F6T1Q0 183 196 PDE12 2,5-phosphodiesterase 12 yes no 2 8.2583E-06 91.855 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0045 0.95311 22.52 4 Median 1.4094 1.3498 NaN 1 0 Median 0.92815 0.80322 NaN 1 0 Median 0.99103 1.0214 NaN 1 0 Median 1.0181 0.88936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15978000 7412800 8564900 8181700 3768400 4413300 7068000 3243600 3824400 659030 360230 298810 68846 40553 28294 0 0 0 0 0 0 22806 1050 23785 120305;120306;120307;120308 121402;121403 121403 2 LSLEGDHSTPPSAYGSVK ______________________________ EGDHSTPPSAYGSVKAYTNFDAERDALNIE K L S V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 2 4 1 0 1 1 0 0 18 0 1843.8952 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 11 28 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3 2.5259E-25 191.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 6 4 11 3 6 0.90454 0.80287 21.279 39 Median 0.88758 0.80287 22.379 9 0 Median 0.96172 0.80107 8.501 6 0 Median 0.85365 0.83045 4.7709 4 0 Median 0.90454 0.77261 20.682 11 0 Median 1.0412 1.0401 9.5775 3 0 Median 0.82627 0.6749 28.676 6 0 Median 1971400000 1007200000 964200000 718100000 375440000 342650000 238230000 119920000 118320000 377420000 192550000 184870000 552610000 276570000 276040000 70678000 35657000 35021000 14347000 7054600 7292400 22807 1885 23786 120309;120310;120311;120312;120313;120314;120315;120316;120317;120318;120319;120320;120321;120322;120323;120324;120325;120326;120327;120328;120329;120330;120331;120332;120333;120334;120335;120336;120337;120338;120339;120340;120341;120342;120343;120344;120345;120346;120347 121404;121405;121406;121407;121408;121409;121410;121411;121412;121413;121414;121415;121416;121417;121418;121419;121420;121421;121422;121423;121424;121425;121426;121427;121428;121429;121430;121431;121432;121433;121434;121435;121436;121437;121438;121439;121440;121441;121442;121443;121444;121445;121446;121447;121448;121449;121450;121451;121452;121453;121454;121455;121456;121457;121458;121459;121460;121461;121462;121463;121464;121465;121466;121467 121417 64 LSLEGIVVQR GGQTLTVFTESSSDKLSLEGIVVQRAECRP SSSDKLSLEGIVVQRAECRPAASENYMRLK K L S Q R A 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1112.6554 P13984 P13984 104 113 GTF2F2 General transcription factor IIF subunit 2 yes yes 2 0.0049654 51.346 By MS/MS 1 1.2669 1.1975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2669 1.1975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349700 876460 1473300 0 0 0 0 0 0 2349700 876460 1473300 0 0 0 0 0 0 0 0 0 22808 1999 23787 120348 121468 121468 1 LSLELFGR MGMVISHDMLLGRWRLSLELFGRVFMEDVG MLLGRWRLSLELFGRVFMEDVGAEPGSILT R L S G R V 0 1 0 0 0 0 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 8 0 933.52837 O95071;E7EMW7;E5RFK7 O95071 2191 2198 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0078694 65.252 By MS/MS By matching 2 1 0.834 0.86085 8.7704 3 Plateau 0.81212 0.81552 9.7124 2 0 Median 0.834 0.742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088700 2233700 1854900 3905100 2148700 1756400 183540 85057 98485 0 0 0 0 0 0 0 0 0 0 0 0 22809 1744 23788 120349;120350;120351 121469;121470 121470 2 LSLEQALPPEPK EQIRKEQEEEREAIRLSLEQALPPEPKEEN AIRLSLEQALPPEPKEENAEPVSKLRIRTP R L S P K E 1 0 0 0 0 1 2 0 0 0 3 1 0 0 3 1 0 0 0 0 0 0 12 0 1320.7289 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 555 566 FAF1 FAS-associated factor 1 yes no 2 0.00063206 64.297 By MS/MS By matching 1 2 0.66526 0.57386 7.2867 3 Median 0.57711 0.54952 NaN 1 0 Median 0.6836 0.60293 6.9883 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7443800 4457500 2986200 4112000 2507900 1604100 3331800 1949700 1382100 0 0 0 0 0 0 0 0 0 0 0 0 22810 575 23789 120352;120353;120354 121471;121472 121472 2 LSLEQALPPEPKEENAEPVSK EQIRKEQEEEREAIRLSLEQALPPEPKEEN LPPEPKEENAEPVSKLRIRTPSGEFLERRF R L S S K L 2 0 1 0 0 1 5 0 0 0 3 2 0 0 4 2 0 0 0 1 0 0 21 1 2304.1849 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 555 575 FAF1 FAS-associated factor 1 yes no 3 0.00041952 27.739 By MS/MS 1 0.34347 0.35324 NaN 1 Median 0.34347 0.35324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9132000 6538500 2593500 9132000 6538500 2593500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22811 575 23790 120355 121473;121474 121474 2 LSLGTYASLHGR VFHISCFRCSYCNNKLSLGTYASLHGRIYC NNKLSLGTYASLHGRIYCKPHFNQLFKSKG K L S G R I 1 1 0 0 0 0 0 2 1 0 3 0 0 0 0 2 1 0 1 0 0 0 12 0 1273.6779 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 424 435 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 8.8595E-07 114.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 1 1 1.1561 0.99739 21.896 11 Median 1.4566 1.415 2.4382 2 1 Median NaN NaN NaN 0 0 Median 0.90244 0.93801 8.6809 2 0 Median 1.1561 0.99593 21.881 5 1 Median 0.92764 0.9747 NaN 1 0 Median 1.4779 1.2378 NaN 1 0 Median 39685000 19377000 20308000 6788900 2430500 4358300 0 0 0 22019000 11277000 10742000 6292100 2983100 3309000 4322900 2574000 1748800 262060 112090 149970 22812 4273 23791 120356;120357;120358;120359;120360;120361;120362;120363;120364;120365;120366 121475;121476;121477;121478;121479;121480;121481;121482;121483;121484 121481 10 LSLKPHQGPVLR KGDASLLQDGVLAEKLSLKPHQGPVLRSNS AEKLSLKPHQGPVLRSNSVP__________ K L S L R S 0 1 0 0 0 1 0 1 1 0 3 1 0 0 2 1 0 0 0 1 0 0 12 1 1343.8038 Q96QT6 Q96QT6 988 999 PHF12 PHD finger protein 12 yes yes 3 0.0002101 62.466 By MS/MS By matching 1 1 0.83688 0.87413 51.123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5364 0.60895 NaN 1 0 Median 1.3057 1.2548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4561300 2589200 1972100 0 0 0 0 0 0 3157000 1914400 1242600 1404300 674790 729520 0 0 0 0 0 0 22813 3723 23792 120367;120368 121485 121485 1 LSLLLNDISR RELEMIGFIENNVSKLSLLLNDISRKSEGL NNVSKLSLLLNDISRKSEGLSGRVLRKLPF K L S S R K 0 1 1 1 0 0 0 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1142.6659 Q15645 Q15645 369 378 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.00037209 105.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 3 1.5487 1.3218 38.975 9 Median 1.3704 1.313 18.23 2 0 Median 1.3074 1.1187 0.37079 2 0 Median 1.3348 1.3218 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.795 3.8198 NaN 1 0 Median 1.7291 1.4806 20.233 3 0 Median 57065000 24469000 32596000 14242000 6487800 7753700 30988000 13497000 17491000 8517100 3672200 4844900 0 0 0 1699400 260180 1439200 1619200 551830 1067400 22814 2960 23793 120369;120370;120371;120372;120373;120374;120375;120376;120377 121486;121487;121488;121489;121490;121491 121488 6 LSLMYAR DLLRLRRRFMRDQEKLSLMYARKGVAEQKR RFMRDQEKLSLMYARKGVAEQKREKEIKSE K L S A R K 1 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 7 0 852.45276 P78527 P78527 2739 2745 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0026423 121.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1 1.172 1.115 21.143 10 Median 0.92172 0.88614 14.553 2 0 Median 1.3673 1.1208 1.0492 2 0 Median 0.99618 1.0623 7.1832 2 0 Median 1.5941 1.3969 9.1697 2 0 Median 1.0379 1.0662 NaN 1 0 Median 2.0016 1.6641 NaN 1 0 Median 206640000 98130000 108510000 45932000 22442000 23491000 34549000 13928000 20621000 102630000 51934000 50692000 9470900 3500000 5970800 11304000 5455200 5848700 2753400 870140 1883300 22815 2647 23794 120378;120379;120380;120381;120382;120383;120384;120385;120386;120387 121492;121493;121494;121495;121496;121497;121498;121499;121500;121501;121502;121503 121494 12 LSLNIDPDAK PDTKAYGDRIERMLRLSLNIDPDAKVEEEP ERMLRLSLNIDPDAKVEEEPEEEPEETAED R L S A K V 1 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1084.5764 P14625;H0YIV0 P14625 745 754 HSP90B1 Endoplasmin yes no 2 0.00036244 100.02 By matching By MS/MS 2 1 1.1044 0.98494 19.954 3 Median 0.91899 0.89353 27.076 2 0 Median 1.1238 0.98494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88965000 41494000 47471000 20315000 10023000 10292000 68650000 31471000 37179000 0 0 0 0 0 0 0 0 0 0 0 0 22816 2006 23795 120388;120389;120390 121504;121505 121504 2 LSLNNGSITHLVIRPNGR IVCRALQFPPEGWLRLSLNNGSITHLVIRP NNGSITHLVIRPNGRVALRTLGDTGFMPPD R L S G R V 0 2 3 0 0 0 0 2 1 2 3 0 0 0 1 2 1 0 0 1 0 0 18 1 1960.0966 Q96HS1;F5GXG4 Q96HS1 252 269 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 4 0.028241 14.695 By MS/MS By matching By matching 1 1 1 1.0987 1.0937 14.485 2 Median 0.917 0.98721 NaN 1 0 Median 1.3164 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6184200 2520600 3663600 4299600 1886700 2412900 977920 318240 659690 906690 315640 591050 0 0 0 0 0 0 0 0 0 22817 3669 23796 120391;120392;120393 121506 121506 1 LSLPPNVR VLDDNKLLTLPNGERLSLPPNVRIMFEVQD TLPNGERLSLPPNVRIMFEVQDLKYATLAT R L S V R I 0 1 1 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 8 0 894.5287 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2333 2340 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.002346 114.19 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.82316 0.69918 4.5045 5 Median 0.69551 0.68203 NaN 1 0 Median 0.86897 0.69918 NaN 1 0 Median 0.70464 0.7407 NaN 1 0 Median 0.86444 0.75311 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82316 0.68752 NaN 1 0 Median 48457000 27778000 20679000 10919000 6403700 4515400 14103000 7452000 6651100 17907000 11012000 6895500 4253300 2200000 2053400 0 0 0 1274200 710910 563290 22818 2865 23797 120394;120395;120396;120397;120398 121507;121508;121509;121510;121511;121512;121513;121514 121508 8 LSLPQNETVADTTLTK GGKDMSIIQWKLVEKLSLPQNETVADTTLT SLPQNETVADTTLTKAPVSSTESVIQSNTP K L S T K A 1 0 1 1 0 1 1 0 0 0 3 1 0 0 1 1 4 0 0 1 0 0 16 0 1729.9098 Q9HC35;B5MBZ0 Q9HC35 868 883 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 1.3516E-20 141.13 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 2 0.82314 0.83019 20.191 10 Median 0.73992 0.71945 24.802 3 1 Median 0.92172 0.79738 22.664 2 0 Median 0.74421 0.80227 17.289 3 2 Median 1.0666 0.92144 9.9107 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63889000 34647000 29242000 40796000 22589000 18207000 4589100 2061000 2528100 14288000 7917400 6370600 4215900 2079700 2136200 0 0 0 0 0 0 22819 4024 23798 120399;120400;120401;120402;120403;120404;120405;120406;120407;120408;120409 121515;121516;121517;121518;121519;121520;121521;121522 121515 8 LSLQDAVSQGVIDQDMATR QACTGGIIHPTTGQKLSLQDAVSQGVIDQD DAVSQGVIDQDMATRLKPAQKAFIGFEGVK K L S T R L 2 1 0 3 0 3 0 1 0 1 2 0 1 0 0 2 1 0 0 2 0 0 19 0 2046.0052 P15924 P15924 2669 2687 DSP Desmoplakin yes yes 2;3 1.9617E-09 88.087 By MS/MS By matching By matching By MS/MS By matching 4 2 3 3 2 0.98211 1.0099 25.9 14 Median 1.0272 1.0317 8.8971 4 0 Median 0.99578 0.8691 20.218 2 0 Median 0.9583 1.0639 16.751 3 0 Median NaN NaN NaN 0 0 Median 0.94906 0.9971 15.272 3 1 Median 1.5563 1.3424 70.218 2 0 Median 24035000 11627000 12408000 12558000 6050300 6508200 2331100 1135600 1195500 2860400 1287200 1573200 0 0 0 5855100 2967900 2887300 429690 185800 243880 22820 2021 23799 120410;120411;120412;120413;120414;120415;120416;120417;120418;120419;120420;120421;120422;120423 121523;121524;121525;121526;121527;121528;121529;121530;121531;121532 121527 10 LSLQDGTLKK AVEEKLQKLQELENRLSLQDGTLKKILALA ELENRLSLQDGTLKKILALAKSVKQNTSSV R L S K K I 0 0 0 1 0 1 0 1 0 0 3 2 0 0 0 1 1 0 0 0 0 0 10 1 1101.6394 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2299 2308 SYNE2 Nesprin-2 yes no 2 0.012041 46.462 By MS/MS 1 0.90551 1.0293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90551 1.0293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1167700 439080 728660 0 0 0 0 0 0 1167700 439080 728660 0 0 0 0 0 0 0 0 0 22821 3521 23800 120424 121533 121533 1 LSLQEQDAAIVK ARADHEQQIKDLEQKLSLQEQDAAIVKNMK EQKLSLQEQDAAIVKNMKSELVRLPRLERE K L S V K N 2 0 0 1 0 2 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1313.7191 Q9Y6D9 Q9Y6D9 232 243 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes yes 2 0.00059794 71.349 By MS/MS 1 0.90569 0.84304 NaN 1 Median 0.90569 0.84304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5929300 2790300 3139000 5929300 2790300 3139000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22822 4490 23801 120425 121534 121534 1 LSLSNAISTALPLTQLR VTGLKLQGATCNNNKLSLSNAISTALPLTQ LSNAISTALPLTQLRWVKQTNTEKKASVVT K L S L R W 2 1 1 0 0 1 0 0 0 1 5 0 0 0 1 3 2 0 0 0 0 0 17 0 1797.036 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4575 4591 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 2.0884E-05 62.924 By MS/MS By matching By matching 3 1 1 0.88717 0.85339 19.835 5 Median 0.88717 0.88611 15.787 3 0 Plateau 1.0541 0.8508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4828 1.1589 NaN 1 0 Median 19475000 9625300 9849400 6515000 3468100 3046900 12745000 6071500 6673000 0 0 0 0 0 0 0 0 0 215200 85660 129540 22823 2865 23802 120426;120427;120428;120429;120430 121535;121536;121537;121538 121537 4 LSLTGHISTVR DRTIKIWDLASGKLKLSLTGHISTVRGVIV GKLKLSLTGHISTVRGVIVSTRSPYLFSCG K L S V R G 0 1 0 0 0 0 0 1 1 1 2 0 0 0 0 2 2 0 0 1 0 0 11 0 1182.6721 O43660;H0YA24 O43660 240 250 PLRG1 Pleiotropic regulator 1 yes no 2 0.00013505 85.958 By MS/MS By MS/MS 1 1 1.1951 1.1137 0.1181 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0981 1.1127 NaN 1 0 Median 1.3007 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13418000 6567500 6850400 0 0 0 0 0 0 8082100 4061400 4020700 5335800 2506200 2829700 0 0 0 0 0 0 22824 1580 23803 120431;120432 121539;121540 121539 2 LSLTQDPVVK DAMSWLNSKMNAQNKLSLTQDPVVKVSEIV NAQNKLSLTQDPVVKVSEIVAKSKELDNFC K L S V K V 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 10 0 1098.6285 O95757;E9PDE8 O95757 758 767 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.0031972 57.59 By MS/MS By MS/MS By matching 1 1 1 1.1269 1.0374 60.347 3 Plateau 0.96014 0.93103 NaN 1 0 Median 1.2351 1.0794 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40867 0.35526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18898000 8369500 10529000 8379400 3919600 4459800 9789400 3964300 5825100 0 0 0 729730 485630 244100 0 0 0 0 0 0 22825 1790 23804 120433;120434;120435 121541;121542 121542 2 LSLTQSDISHIGSMR GFTILSSKSLVLGQKLSLTQSDISHIGSMR LSLTQSDISHIGSMRVEGIVHPTTAEIDLK K L S M R V 0 1 0 1 0 1 0 1 1 2 2 0 1 0 0 4 1 0 0 0 0 0 15 0 1643.8301 Q9P0M6;Q5SQT3 Q9P0M6 197 211 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 2;3 5.183E-09 147.37 By matching By MS/MS By matching 1 4 2 0.90715 0.91987 35.01 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38124 0.41545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90549 0.9151 12.089 4 1 Median 1.3698 1.1118 6.0944 2 0 Median 166910000 87059000 79856000 0 0 0 0 0 0 3044100 2080000 964180 0 0 0 153400000 79855000 73550000 10466000 5124600 5341600 22826 4206 23805;23806 120436;120437;120438;120439;120440;120441;120442 121543;121544;121545;121546;121547 121543 1900 5 LSLTYER ELNLTGSFWNDSFARLSLTYERLFGTTVTF FWNDSFARLSLTYERLFGTTVTFKFILANR R L S E R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 7 0 880.46543 Q15904;A0A0C4DGX8 Q15904 309 315 ATP6AP1 V-type proton ATPase subunit S1 yes no 2 0.039453 70.912 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22827 257 23807 120443 121548 121548 1 LSLVDLAGSER LYDVKSGTSGEKVGKLSLVDLAGSERATKT KVGKLSLVDLAGSERATKTGAAGDRLKEGS K L S E R A 1 1 0 1 0 0 1 1 0 0 3 0 0 0 0 2 0 0 0 1 0 0 11 0 1158.6245 Q9NQT8;E7ERX9 Q9NQT8 249 259 KIF13B Kinesin-like protein KIF13B;Kinesin-like protein yes no 2 0.022371 52.579 By MS/MS 1 0.97775 0.973 NaN 1 Median 0.97775 0.973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2400000 1178600 1221400 2400000 1178600 1221400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22828 4068 23808 120444 121549 121549 1 LSLYQAMR LGAVGGVRLLPSGQRLSLYQAMRQKLLGPR LLPSGQRLSLYQAMRQKLLGPRVALALLEA R L S M R Q 1 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 8 0 980.51134 P58107;A0A075B730 P58107 944 951 EPPK1 Epiplakin yes no 2 0.0024173 118.69 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1397 1.0193 55.206 5 Median 0.67957 0.69517 65.835 2 0 Median 1.268 1.0193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9707 2.0493 NaN 1 0 Median 1.1166 0.91876 NaN 1 0 Median 43396000 18045000 25351000 25276000 10131000 15145000 14550000 6397000 8152600 0 0 0 0 0 0 3299300 1398700 1900500 270800 118320 152480 22829 2520 23809 120445;120446;120447;120448;120449 121550;121551;121552 121550 3 LSMKPEPLFR RSIEEACFTLQYLNKLSMKPEPLFRSVGNT QYLNKLSMKPEPLFRSVGNTIDPVILFQKM K L S F R S 0 1 0 0 0 0 1 0 0 0 2 1 1 1 2 1 0 0 0 0 0 0 10 1 1216.6638 P46821;D6RA32;D6RA40 P46821 391 400 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 0.00025073 71.349 By MS/MS By MS/MS 2 3 0.99887 0.98221 11.018 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84128 0.99066 8.2108 2 0 Median 1.0174 0.98221 14.054 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18281000 10100000 8181200 0 0 0 0 0 0 16309000 9085000 7223900 1972100 1014800 957350 0 0 0 0 0 0 22830 2347 23810 120450;120451;120452;120453;120454 121553;121554;121555 121554 3 LSMMLLDSR DVTASTYHQVQHEARLSMMLLDSRADDGFH VQHEARLSMMLLDSRADDGFHLLLMTPKPM R L S S R A 0 1 0 1 0 0 0 0 0 0 3 0 2 0 0 2 0 0 0 0 0 0 9 0 1064.5358 Q9H6R4;A0A0A0MRW6 Q9H6R4 443 451 NOL6 Nucleolar protein 6 yes no 2 0.0030194 67.993 By matching By MS/MS By matching By MS/MS 1 1 1 3 1.2529 1.3499 20.755 6 Median NaN NaN NaN 0 0 Median 1.676 1.483 NaN 1 0 Median 1.291 1.4177 NaN 1 0 Median 1.9691 1.7546 NaN 1 0 Median 1.021 1.239 12.354 3 0 Plateau NaN NaN NaN 0 0 Median 8772100 4539000 4233200 0 0 0 195200 80432 114760 3119400 1519600 1599800 88566 29627 58939 5369000 2909300 2459700 0 0 0 22831 3976 23811 120455;120456;120457;120458;120459;120460 121556;121557;121558 121556 3 LSMSQLNEK NCNLICGDEYGPETRLSMSQLNEKETPFEL YGPETRLSMSQLNEKETPFELIEALLKYIE R L S E K E 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 9 0 1048.5223 Q08211 Q08211 622 630 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1.3414 1.2332 23.102 8 Median 1.4085 1.3842 6.603 2 0 Median 1.4941 1.2546 NaN 1 0 Median 0.81687 0.9063 41.125 2 0 Median NaN NaN NaN 0 0 Median 1.2139 1.2721 NaN 1 1 Median 1.3896 1.1653 3.6484 2 1 Median 121110000 49411000 71703000 9377600 3719500 5658100 41216000 16344000 24871000 34524000 15133000 19391000 0 0 0 28169000 11202000 16967000 7827800 3012000 4815700 22832 2736 23812 120461;120462;120463;120464;120465;120466;120467;120468 121559;121560;121561;121562;121563;121564 121562 6 LSMWDRPDDLIGR WTGDERVFFYNPTTRLSMWDRPDDLIGRAD TRLSMWDRPDDLIGRADVDKIIQEPPHKKG R L S G R A 0 2 0 3 0 0 0 1 0 1 2 0 1 0 1 1 0 1 0 0 0 0 13 1 1572.7719 O14776;G3V220 O14776 553 565 TCERG1 Transcription elongation regulator 1 yes no 2;3 1.415E-05 89.629 By matching By MS/MS By matching 1 4 3 0.89948 1.0443 31.494 8 Median NaN NaN NaN 0 0 Median 0.90553 0.89711 NaN 1 0 Median 0.89826 1.0988 43.558 4 0 Linear 1.0835 1.0608 1.6094 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64045000 35700000 28345000 0 0 0 593850 300430 293420 60805000 34181000 26624000 2645900 1218400 1427500 0 0 0 0 0 0 22833 1494 23813;23814 120469;120470;120471;120472;120473;120474;120475;120476 121565;121566;121567;121568;121569 121567 481 5 LSMYGVDLHHAK SPAQADSQFLENAKRLSMYGVDLHHAKDSE AKRLSMYGVDLHHAKDSEGVDIKLGVCANG R L S A K D 1 0 0 1 0 0 0 1 2 0 2 1 1 0 0 1 0 0 1 1 0 0 12 0 1369.6813 A0A0A0MRA8;Q9Y2J2;A8K968;A0A1B0GTF8;Q4VXN0;A0A0C4DH22;Q9H4G0;O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 401 412 EPB41L3;EPB41L1;EPB41L2 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed;Band 4.1-like protein 1;Band 4.1-like protein 2 no no 3 0.00035234 54.65 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.1403 0.98297 37.534 7 Median 1.264 1.2406 4.1209 2 0 Median 1.2384 1.0511 NaN 1 0 Median 0.51517 0.55923 39.172 2 0 Median 1.0727 0.92974 7.874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30923000 16483000 14440000 11071000 4942500 6128300 6657800 2961500 3696200 8339500 5953900 2385600 4854700 2625200 2229500 0 0 0 0 0 0 22834 1573;156 23815 120477;120478;120479;120480;120481;120482;120483 121570;121571;121572;121573;121574;121575;121576 121576 7 LSNIFVIGK VVHVKDANGNSFATRLSNIFVIGKGNKPWI NSFATRLSNIFVIGKGNKPWISLPRGKGIR R L S G K G 0 0 1 0 0 0 0 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 9 0 989.59097 P62701 P62701 222 230 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.0011047 85.212 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 5 2 2 2 2 1.2368 1.0709 18.627 18 Median 1.1019 0.99901 23.514 5 0 Median 1.2286 1.0264 5.6061 5 0 Median 1.2701 1.2033 3.6016 2 0 Median 1.5934 1.2531 3.7436 2 0 Median 1.3017 1.316 5.2295 2 0 Median 1.4677 1.2355 4.4485 2 0 Median 609180000 272100000 337070000 305470000 138530000 166940000 57693000 25516000 32177000 69399000 30177000 39222000 3388700 1255500 2133200 153350000 68231000 85117000 19881000 8395000 11486000 22835 2593 23816 120484;120485;120486;120487;120488;120489;120490;120491;120492;120493;120494;120495;120496;120497;120498;120499;120500;120501 121577;121578;121579;121580;121581;121582;121583;121584;121585;121586;121587;121588;121589;121590;121591;121592;121593;121594;121595;121596 121596 20 LSNKVEAIDVEEAKR LESLIRLAEAHAKVRLSNKVEAIDVEEAKR LSNKVEAIDVEEAKRLHREALKQSATDPRT R L S K R L 2 1 1 1 0 0 3 0 0 1 1 2 0 0 0 1 0 0 0 2 0 0 15 2 1699.9105 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 699 713 MCM4 DNA replication licensing factor MCM4 yes no 3;4 9.1585E-10 100.41 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 3 2 2 0.88502 1.0059 19.949 14 Median 0.86501 0.98321 6.4661 2 0 Median 1.0324 1.0927 20.384 5 0 Median 0.81481 1.0151 21.812 3 0 Median 0.9923 1.0952 21.838 2 0 Median 0.67583 0.79642 27.138 2 0 Median NaN NaN NaN 0 0 Median 106880000 51364000 55521000 37641000 18437000 19204000 26169000 10944000 15225000 32248000 16751000 15497000 3382000 1575200 1806800 7443800 3656400 3787400 0 0 0 22836 441 23817 120502;120503;120504;120505;120506;120507;120508;120509;120510;120511;120512;120513;120514;120515 121597;121598;121599;121600;121601;121602;121603;121604;121605;121606;121607;121608;121609 121598 13 LSNLALVKPEK NSILAQVLDQSARARLSNLALVKPEKTKAV ARARLSNLALVKPEKTKAVENYLIQMARYG R L S E K T 1 0 1 0 0 0 1 0 0 0 3 2 0 0 1 1 0 0 0 1 0 0 11 1 1210.7285 O14737;K7EQA1 O14737 56 66 PDCD5 Programmed cell death protein 5 yes no 2;3 0.00012985 70.488 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.99644 0.93313 12.614 7 Median 0.98334 0.92087 1.871 2 0 Median 0.95176 0.82509 0.66991 2 0 Median 1.0694 1.0888 2.1393 2 0 Median 1.2863 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 204970000 101060000 103910000 92623000 44583000 48040000 101230000 50951000 50280000 9545100 4792300 4752800 1573200 734740 838500 0 0 0 0 0 0 22837 1491 23818 120516;120517;120518;120519;120520;120521;120522 121610;121611;121612;121613;121614;121615;121616;121617;121618;121619 121611 10 LSNNAQNWGMQR ______________________________ KVKLSNNAQNWGMQRATNVTYQAHHVSRNK K L S Q R A 1 1 3 0 0 2 0 1 0 0 1 0 1 0 0 1 0 1 0 0 0 0 12 0 1417.6521 O43252 O43252 13 24 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 4.3496E-06 113.62 By MS/MS By MS/MS 1 1 1.4062 1.2846 25.081 2 Median 1.1168 1.0759 NaN 1 0 Median 1.7705 1.5339 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11146000 4948700 6197300 6591200 3005600 3585600 4554800 1943100 2611700 0 0 0 0 0 0 0 0 0 0 0 0 22838 1561 23819 120523;120524 121620;121621;121622 121620 3 LSNNSVVEIASLR IYIDGRPVLCGSKWRLSNNSVVEIASLRFV WRLSNNSVVEIASLRFVFLINQDLIALIRA R L S L R F 1 1 2 0 0 0 1 0 0 1 2 0 0 0 0 3 0 0 0 2 0 0 13 0 1400.7623 Q96EZ8 Q96EZ8 427 439 MCRS1 Microspherule protein 1 yes yes 2 0.00062741 69.01 By MS/MS By matching 1 1 1.1949 1.137 4.4813 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1333 1.1736 NaN 1 0 Median 1.2599 1.1015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4697000 2214900 2482000 0 0 0 0 0 0 4362500 2052500 2310000 334450 162400 172050 0 0 0 0 0 0 22839 3646 23820 120525;120526 121623 121623 1 LSNRPAFMPSEGK CQLEINFNTLQTKLRLSNRPAFMPSEGKMV LRLSNRPAFMPSEGKMVSDINNGWQHLEQA R L S G K M 1 1 1 0 0 0 1 1 0 0 1 1 1 1 2 2 0 0 0 0 0 0 13 1 1432.7133 O43707;K7EJH8 O43707 366 378 ACTN4 Alpha-actinin-4 yes no 2;3 2.4994E-06 142.08 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 0.76208 0.72138 24.187 10 Median 0.85832 0.89423 38.644 4 0 Linear 0.78299 0.75025 7.2676 4 0 Median 0.62805 0.7128 NaN 1 0 Median 0.71823 0.69023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131910000 73925000 57985000 59280000 32978000 26302000 64082000 35909000 28173000 5750300 3641200 2109100 2798500 1397400 1401100 0 0 0 0 0 0 22840 1585 23821 120527;120528;120529;120530;120531;120532;120533;120534;120535;120536 121624;121625;121626;121627;121628;121629;121630;121631;121632;121633;121634;121635;121636;121637 121631 14 LSNRPAFMPSEGR CQLEINFNTLQTKLRLSNRPAFMPSEGRMV LRLSNRPAFMPSEGRMVSDINNAWGCLEQV R L S G R M 1 2 1 0 0 0 1 1 0 0 1 0 1 1 2 2 0 0 0 0 0 0 13 1 1460.7194 P12814;H9KV75 P12814 347 359 ACTN1 Alpha-actinin-1 yes no 2;3 0.00010706 76.588 By MS/MS By MS/MS By matching 4 3 1 0.60751 0.70197 24.61 7 Median 0.82734 0.84826 29.966 3 0 Median 0.59649 0.57506 19.206 3 0 Median 0.60751 0.70197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64645000 36222000 28423000 26164000 12354000 13809000 35829000 22190000 13639000 2652700 1677500 975160 0 0 0 0 0 0 0 0 0 22841 1983 23822 120537;120538;120539;120540;120541;120542;120543;120544 121638;121639;121640;121641;121642;121643;121644;121645;121646 121645 9 LSNTQGVVSAFSTMMSVHR PLTTNLINLLAENGRLSNTQGVVSAFSTMM QGVVSAFSTMMSVHRGEVPCTVTSASPLEE R L S H R G 1 1 1 0 0 1 0 1 1 0 1 0 2 1 0 4 2 0 0 3 0 0 19 0 2050.9928 P48047;A0A494C0K9;H7C0C1;H7C068 P48047 118 136 ATP5O ATP synthase subunit O, mitochondrial yes no 2;3 4.0034E-08 72.421 By MS/MS By MS/MS 5 3 1.1367 0.9968 13.806 7 Median 1.0539 1.0006 18.189 4 1 Median 1.2589 1.0484 7.3132 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85887000 39056000 46831000 83970000 38102000 45868000 1917800 954850 962970 0 0 0 0 0 0 0 0 0 0 0 0 22842 2358 23823;23824 120545;120546;120547;120548;120549;120550;120551;120552 121647;121648;121649;121650;121651;121652;121653;121654;121655 121648 1079;1080 9 LSNTSPEFQEMSLLER FYFSTTYDLTHTLQRLSNTSPEFQEMSLLE SNTSPEFQEMSLLERADQRFVWNGHLLREL R L S E R A 0 1 1 0 0 1 3 0 0 0 3 0 1 1 1 3 1 0 0 0 0 0 16 0 1879.8986 Q9NTJ5;E9PGZ4;F8WDN7;C9J3E3 Q9NTJ5 146 161 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 1.6624E-05 84.365 By MS/MS By matching 2 1 0.93523 0.91453 14.991 3 Median 0.93733 0.93105 2.5312 2 0 Median 0.80672 0.71947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15237000 7950800 7286200 15065000 7865100 7200000 171870 85701 86166 0 0 0 0 0 0 0 0 0 0 0 0 22843 4109 23825 120553;120554;120555 121656;121657;121658;121659 121657 4 LSNVNLQEK GRMSSKPINFSVILKLSNVNLQEKAYRDGL FSVILKLSNVNLQEKAYRDGLVEQLYDLTL K L S E K A 0 0 2 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q9Y3T9 Q9Y3T9 508 516 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.002581 85.731 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1655 1.1216 5.3425 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0519 1.1211 NaN 1 1 Median 1.2913 1.1222 NaN 1 1 Median 1.0196 1.0543 NaN 1 1 Median 1.4459 1.2016 NaN 1 0 Median 8558900 4101000 4457900 0 0 0 0 0 0 2097100 1019200 1077900 1284800 620650 664190 4180300 2002500 2177700 996780 458600 538180 22844 4433 23826 120556;120557;120558;120559 121660;121661;121662;121663;121664 121661 5 LSPADDELYQR CPPVELPWAPRRGHRLSPADDELYQRTRIS RGHRLSPADDELYQRTRISLLQREAAQAMY R L S Q R T 1 1 0 2 0 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1305.6201 Q9BU61 Q9BU61 34 44 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 yes yes 2 0.00094301 61.78 By MS/MS By MS/MS By MS/MS 1 2 1 1.1522 0.96554 24.149 4 Median 0.93781 0.90306 NaN 1 0 Median 1.1522 0.96554 4.7159 2 0 Median 1.4994 1.5195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28606000 13187000 15419000 18327000 9085200 9242300 6486700 2952600 3534100 3791900 1148900 2642900 0 0 0 0 0 0 0 0 0 22845 3834 23827 120560;120561;120562;120563 121665;121666;121667;121668;121669 121666 5 LSPDAIPGK YASLNFRDIMLATGKLSPDAIPGKWTSQDS MLATGKLSPDAIPGKWTSQDSLLGMEFSGR K L S G K W 1 0 0 1 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 0 0 0 9 0 896.49673 P49327;A0A0U1RQF0 P49327 1583 1591 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.003431 65.156 By MS/MS By MS/MS 1 4 1.0691 0.94658 30.11 5 Median 0.95421 0.92022 NaN 1 1 Median 1.071 0.95079 34.733 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65677000 31136000 34541000 16031000 7549100 8481900 49646000 23587000 26060000 0 0 0 0 0 0 0 0 0 0 0 0 22846 2377 23828 120564;120565;120566;120567;120568 121670;121671;121672;121673;121674 121674 5 LSPDAIPGKWTSQDSLLGMEFSGR YASLNFRDIMLATGKLSPDAIPGKWTSQDS WTSQDSLLGMEFSGRDASGKRVMGLVPAKG K L S G R D 1 1 0 2 0 1 1 3 0 1 3 1 1 1 2 4 1 1 0 0 0 0 24 1 2591.269 P49327;A0A0U1RQF0 P49327 1583 1606 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.00020697 41.482 By MS/MS 1 0.64259 0.65077 NaN 1 Median 0.64259 0.65077 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3694800 2163000 1531900 3694800 2163000 1531900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22847 2377 23829 120569 121675 121675 1 LSPDGHFGSK ITAGDFQNKHPNMCRLSPDGHFGSKFVTAV PNMCRLSPDGHFGSKFVTAVATGGPDNQVH R L S S K F 0 0 0 1 0 0 0 2 1 0 1 1 0 1 1 2 0 0 0 0 0 0 10 0 1043.5036 Q8TAT6 Q8TAT6 357 366 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.0044043 53.327 By MS/MS 1 0.84313 0.72493 NaN 1 Median NaN NaN NaN 0 0 Median 0.84313 0.72493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3167100 1570900 1596100 0 0 0 3167100 1570900 1596100 0 0 0 0 0 0 0 0 0 0 0 0 22848 3456 23830 120570 121676 121676 1 LSPDTQPGLLEK L S E K 0 0 0 1 0 1 1 1 0 0 3 1 0 0 2 1 1 0 0 0 0 0 12 0 1296.6925 REV__A0A087WWW0 yes yes 2;3 0.00062781 68.224 By MS/MS By matching 3 1 0.85058 0.82395 27.992 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85058 0.82395 4.1344 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.714 1.4025 NaN 1 0 Median 14001000 8603800 5396900 0 0 0 0 0 0 13671000 8416100 5254500 0 0 0 0 0 0 330170 187730 142440 + 22849 4505 23831;23832 120571;120572;120573;120574 121677;121678 121678 2 LSPEDYTLK TLPAITLKLGGKGYKLSPEDYTLKVSQAGK GGKGYKLSPEDYTLKVSQAGKTLCLSGFMG K L S L K V 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 1 1 0 1 0 0 0 9 0 1064.539 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;H7C469;H7C1V0;A0A1B0GVF1 A0A1B0GW44 342 350 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.00091857 90.657 By MS/MS By MS/MS By MS/MS By matching By matching 2 5 1 1 1 1.3715 1.1907 65.607 10 Median 1.3888 1.3028 12.999 2 0 Median 1.3287 1.1064 68.805 5 0 Median 1.7572 1.6475 NaN 1 0 Median 0.7572 0.6207 NaN 1 0 Median 2.742 2.8086 NaN 1 0 Median NaN NaN NaN 0 0 Median 103200000 42648000 60555000 69791000 29362000 40429000 19740000 7806500 11933000 10202000 4300500 5901400 663080 452810 210270 2807000 726210 2080800 0 0 0 22850 324 23833 120575;120576;120577;120578;120579;120580;120581;120582;120583;120584 121679;121680;121681;121682;121683;121684;121685 121680 7 LSPEELLLR AALLRDGETLEELMKLSPEELLLRWANFHL LEELMKLSPEELLLRWANFHLENSGWQKIN K L S L R W 0 1 0 0 0 0 2 0 0 0 4 0 0 0 1 1 0 0 0 0 0 0 9 0 1068.6179 P13797;A0A0A0MSQ0;P13796;Q14651;C9JAM8 P13797 267 275 PLS3;LCP1;PLS1 Plastin-3;Plastin-2;Plastin-1 no no 2 0.00077011 98.997 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 6 4 2 2 2 0.95711 0.90939 38.006 22 Median 0.85788 0.83594 11.104 6 0 Median 1.0265 0.90569 11.999 6 0 Median 0.91186 0.9161 14.003 4 0 Median 0.83986 0.7197 37.12 2 0 Median 2.7458 2.8254 12.792 2 0 Median 1.2014 0.98386 6.1404 2 0 Median 599020000 287370000 311660000 193250000 95384000 97866000 359810000 171220000 188580000 36614000 16990000 19624000 5000700 2370400 2630300 3030100 746560 2283500 1316700 648600 668070 22851 1995;2884 23834 120585;120586;120587;120588;120589;120590;120591;120592;120593;120594;120595;120596;120597;120598;120599;120600;120601;120602;120603;120604;120605;120606 121686;121687;121688;121689;121690;121691;121692;121693;121694;121695;121696;121697;121698;121699;121700;121701;121702;121703;121704;121705;121706;121707;121708;121709;121710 121701 25 LSPENNQVLTK TAVVKIPGTPGAGGRLSPENNQVLTKKKLQ AGGRLSPENNQVLTKKKLQDLVREVDPNEQ R L S T K K 0 0 2 0 0 1 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 0 1241.6616 Q16514 Q16514 50 60 TAF12 Transcription initiation factor TFIID subunit 12 yes yes 2 0.0064539 44.203 By MS/MS 2 0.82914 0.8167 11.636 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82914 0.8167 11.636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3448600 1743800 1704800 0 0 0 0 0 0 3448600 1743800 1704800 0 0 0 0 0 0 0 0 0 22852 2983 23835 120607;120608 121711;121712 121711 2 LSPEPWTPETGLVTDAFK ISASLEKFEIPVKIRLSPEPWTPETGLVTD EPWTPETGLVTDAFKLKRKELKTHYQADIE R L S F K L 1 0 0 1 0 0 2 1 0 0 2 1 0 1 3 1 3 1 0 1 0 0 18 0 1986.9939 O60488;O95573 O95573 682 699 ACSL4;ACSL3 Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3 no no 2 0.00023006 43.382 By MS/MS By matching By MS/MS 2 1 1 0.64631 0.63628 16.928 4 Median 0.57235 0.5491 1.1876 2 0 Median 0.81868 0.73114 NaN 1 0 Median 0.69707 0.74072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15675000 9264900 6410400 12525000 7466900 5057900 1172300 707620 464670 1978200 1090400 887870 0 0 0 0 0 0 0 0 0 22853 1780;1615 23836 120609;120610;120611;120612 121713;121714 121713 2 LSPETQSAIEQEIR MSEKLGVMTYSDTGKLSPETQSAIEQEIRI KLSPETQSAIEQEIRILLRDSYERAKHILK K L S I R I 1 1 0 0 0 2 3 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 14 0 1599.8104 Q96I63;Q96TA2 Q96I63 709 722 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 4.1325E-07 143.24 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0233 0.93341 4.5719 4 Median 0.96565 0.91804 NaN 1 0 Median 1.0946 0.94904 NaN 1 0 Median 0.94175 0.9934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0845 0.89335 NaN 1 0 Median 36633000 17236000 19397000 11525000 5153200 6371500 4078800 2047300 2031500 1485900 845620 640290 0 0 0 0 0 0 19543000 9189900 10353000 22854 3677 23837 120613;120614;120615;120616 121715;121716;121717;121718 121715 4 LSPFMADIR GEYAVHVLCNSEDIRLSPFMADIRDAPQDF NSEDIRLSPFMADIRDAPQDFHPDRVKARG R L S I R D 1 1 0 1 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 9 0 1048.5376 P21333;Q60FE5;A0A087WWY3 P21333 656 664 FLNA Filamin-A no no 2 0.00082536 95.815 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 2 4 3 1 2 0.93202 0.89591 17.646 17 Median 0.94898 0.89073 9.1684 5 1 Median 0.91107 0.72776 5.6718 2 0 Median 0.90324 0.98499 7.0508 4 0 Median 1.2326 1.0733 15.558 3 0 Plateau 1.1365 1.1924 NaN 1 0 Median 0.76547 0.65409 0.30692 2 0 Median 298420000 150290000 148130000 155510000 75962000 79550000 104530000 54805000 49720000 29500000 15517000 13983000 4375800 1956300 2419600 4046500 1806100 2240400 458140 243620 214530 22855 2088;3120 23838;23839 120617;120618;120619;120620;120621;120622;120623;120624;120625;120626;120627;120628;120629;120630;120631;120632;120633 121719;121720;121721;121722;121723;121724;121725;121726;121727;121728;121729;121730;121731;121732;121733;121734;121735;121736;121737;121738 121720 854 20 LSPFMADIRDAPQDFHPDR GEYAVHVLCNSEDIRLSPFMADIRDAPQDF MADIRDAPQDFHPDRVKARGPGLEKTGVAV R L S D R V 2 2 0 4 0 1 0 0 1 1 1 0 1 2 3 1 0 0 0 0 0 0 19 1 2227.048 P21333;Q60FE5;A0A087WWY3 P21333 656 674 FLNA Filamin-A no no 4 0.022063 15.725 By MS/MS 2 0.67463 0.72727 6.5524 2 Median 0.67463 0.72727 6.5524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11171000 6608700 4562300 11171000 6608700 4562300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22856 2088;3120 23840 120634;120635 121739 121739 1 LSPGGYFIGTTPNSFELIR SYEQADMMLRNACERLSPGGYFIGTTPNSF GYFIGTTPNSFELIRRLEASETESFGNEIY R L S I R R 0 1 1 0 0 0 1 3 0 2 2 0 0 2 2 2 2 0 1 0 0 0 19 0 2068.0629 O43148;K7EP06 O43148 308 326 RNMT mRNA cap guanine-N7 methyltransferase yes no 2 0.0012568 34.685 By MS/MS By MS/MS 2 1 0.66962 0.67528 16.44 3 Median 0.62475 0.63173 9.4282 2 0 Median NaN NaN NaN 0 0 Median 0.78226 0.81955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4212200 2259600 1952600 1243600 728700 514890 0 0 0 2968600 1530900 1437700 0 0 0 0 0 0 0 0 0 22857 1554 23841 120636;120637;120638 121740;121741;121742 121741 3 LSPISHGNTIALFFR LPPSDTIYSYVRPERLSPISHGNTIALFFR LSPISHGNTIALFFRSLLPNYTMEGERPEE R L S F R S 1 1 1 0 0 0 0 1 1 2 2 0 0 2 1 2 1 0 0 0 0 0 15 0 1671.9097 Q9BQ70 Q9BQ70 601 615 TCF25 Transcription factor 25 yes yes 3 0.068286 8.797 By MS/MS By matching By matching 1 1 1 0.84249 0.83711 38.593 3 Median 0.84249 0.83711 NaN 1 0 Median 1.4067 1.2795 NaN 1 0 Median 0.5682 0.59211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2953400 1507500 1445900 1147400 673860 473510 770300 239040 531260 1035800 594640 441110 0 0 0 0 0 0 0 0 0 22858 3786 23842 120639;120640;120641 121743 121743 1 LSPLAQELR FREGARQKVQELQDKLSPLAQELRDRARAH QELQDKLSPLAQELRDRARAHVETLRQQLA K L S L R D 1 1 0 0 0 1 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1025.5869 CON__P15497 CON__P15497 164 172 yes yes 2 0.000467 97.431 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.011922 0.011738 86.727 4 Median 0.046818 0.044477 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.01042 0.010011 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.013641 0.013762 NaN 1 1 Median 0.0071099 0.0056923 NaN 1 1 Median 81081000 78860000 2220800 23132000 21651000 1480200 0 0 0 12229000 12078000 150930 0 0 0 21817000 21525000 291460 23904000 23606000 298170 + 22859 758 23843 120642;120643;120644;120645 121744;121745;121746;121747 121744 4 LSPLAQELRDR FREGARQKVQELQDKLSPLAQELRDRARAH LQDKLSPLAQELRDRARAHVETLRQQLAPY K L S D R A 1 2 0 1 0 1 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 1 1296.715 CON__P15497 CON__P15497 164 174 yes yes 2;3 4.4983E-05 114.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.023526 0.024947 78.605 4 Median 0.083246 0.088984 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.029437 0.030522 NaN 1 1 Median 0.016266 0.014565 NaN 1 1 Median 0.018802 0.020391 NaN 1 1 Median NaN NaN NaN 0 0 Median 34539000 32762000 1777600 13094000 11825000 1269500 0 0 0 3912100 3730900 181180 1135300 1108700 26614 16398000 16097000 300270 0 0 0 + 22860 758 23844 120646;120647;120648;120649;120650 121748;121749;121750;121751;121752 121750 5 LSPNAWK VINNAAGNFISPTERLSPNAWKTITDIVLN NFISPTERLSPNAWKTITDIVLNGTAFVTL R L S W K T 1 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 7 0 814.43374 Q16698;E5RJG7;E5RFV2;E5RJD2 Q16698 156 162 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 0.026776 52.683 By MS/MS 1 1.3404 1.1343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3404 1.1343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1677800 628550 1049200 0 0 0 0 0 0 0 0 0 1677800 628550 1049200 0 0 0 0 0 0 22861 2994 23845 120651 121753;121754 121753 2 LSPNPPNLTK ESKKQKKRGRPPAEKLSPNPPNLTKKMKKI PPAEKLSPNPPNLTKKMKKIVDAVIKYKDS K L S T K K 0 0 2 0 0 0 0 0 0 0 2 1 0 0 3 1 1 0 0 0 0 0 10 0 1079.5975 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A2R8YF38 P51532 1451 1460 SMARCA4 Transcription activator BRG1 yes no 2 0.035656 32.415 By matching By MS/MS By MS/MS 1 1 1 0.80753 0.73184 29.715 3 Median 0.8933 0.85909 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.43409 0.48305 NaN 1 0 Median 0.80753 0.73184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12399000 7505400 4893500 4347400 2393200 1954200 0 0 0 6231100 4168100 2063000 1820400 944100 876330 0 0 0 0 0 0 22862 366 23846 120652;120653;120654 121755;121756 121755 2 LSPNYVVCR NSREARYDPSLLDVRLSPNYVVCRDCEVTN SLLDVRLSPNYVVCRDCEVTNDGHTIQVIL R L S C R D 0 1 1 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 2 0 0 9 0 1106.5543 P35219 P35219 70 78 CA8 Carbonic anhydrase-related protein yes yes 2 0.049524 67.032 By MS/MS 1 0.66917 0.56576 NaN 1 Median NaN NaN NaN 0 0 Median 0.66917 0.56576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1559200 818530 740670 0 0 0 1559200 818530 740670 0 0 0 0 0 0 0 0 0 0 0 0 22863 2231 23847 120655 121757 121757 0 LSPPSSSAASSYSFSDLNSTR LYEKKIFEYETQRRRLSPPSSSAASSYSFS SAASSYSFSDLNSTRGDADMYDLPKKEDAL R L S T R G 2 1 1 1 0 0 0 0 0 0 2 0 0 1 2 9 1 0 1 0 0 0 21 0 2159.9971 P50402 P50402 48 68 EMD Emerin yes yes 2;3 1.4147E-08 57.328 By MS/MS By matching By matching By MS/MS 1 1 1 3 0.77108 0.76257 15.427 6 Median 0.64207 0.6115 NaN 1 0 Median 1.1385 0.98338 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91447 0.77044 NaN 1 0 Median 0.76274 0.75478 5.53 3 0 Median NaN NaN NaN 0 0 Median 17399000 9941000 7458100 4145300 2420400 1724900 219090 105270 113820 0 0 0 142100 80295 61810 12893000 7335000 5557500 0 0 0 22864 2412 23848 120656;120657;120658;120659;120660;120661 121758;121759;121760;121761;121762;121763 121758 6 LSPPYSSPQEFAQDVGR GTLDLTLIRARLQEKLSPPYSSPQEFAQDV PPYSSPQEFAQDVGRMFKQFNKLTEDKADV K L S G R M 1 1 0 1 0 2 1 1 0 0 1 0 0 1 3 3 0 0 1 1 0 0 17 0 1876.8955 Q13263;M0R0K9 Q13263 751 767 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 8.1673E-19 178.32 By MS/MS By matching By MS/MS By matching By MS/MS By matching 6 2 4 2 5 1 0.58748 0.59301 25.065 20 Median 0.56714 0.55409 33.702 6 0 Median 0.51898 0.4626 37.515 2 0 Median 0.58957 0.61621 11.481 4 0 Median 0.73391 0.62572 1.443 2 0 Median 0.58658 0.60158 24.099 5 0 Median 0.8584 0.71133 NaN 1 0 Median 135110000 83044000 52065000 63916000 40224000 23693000 1310500 772710 537800 46766000 28329000 18437000 1494500 861320 633190 21271000 12667000 8604100 349890 190140 159750 22865 2802 23849 120662;120663;120664;120665;120666;120667;120668;120669;120670;120671;120672;120673;120674;120675;120676;120677;120678;120679;120680;120681 121764;121765;121766;121767;121768;121769;121770;121771;121772;121773;121774;121775;121776;121777;121778;121779;121780;121781;121782;121783;121784;121785;121786;121787;121788;121789;121790;121791 121779 28 LSPQAVNSIAK DPQELQKALTTMGFRLSPQAVNSIAKRYST MGFRLSPQAVNSIAKRYSTNGKITFDDYIA R L S A K R 2 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 11 0 1126.6346 C9J0K6;P30626 C9J0K6 93 103 SRI Sorcin yes no 2 0.00016774 80.231 By MS/MS By MS/MS By MS/MS 2 2 1 0.96853 0.83243 17.271 5 Median 0.84084 0.78874 13.302 2 0 Median 0.97018 0.82641 1.0254 2 0 Median NaN NaN NaN 0 0 Median 1.3878 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37982000 20003000 17979000 25125000 13577000 11548000 11162000 5817200 5345100 0 0 0 1694600 608220 1086400 0 0 0 0 0 0 22866 669 23850 120682;120683;120684;120685;120686 121792;121793;121794;121795;121796 121792 5 LSPQAVNSIAKR DPQELQKALTTMGFRLSPQAVNSIAKRYST GFRLSPQAVNSIAKRYSTNGKITFDDYIAC R L S K R Y 2 1 1 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 12 1 1282.7357 C9J0K6;P30626 C9J0K6 93 104 SRI Sorcin yes no 2;3 0.00044065 50.207 By MS/MS By MS/MS 2 2 0.98279 0.9187 48.511 4 Median 0.82909 0.82224 11.063 2 0 Median 1.5925 1.4566 60.56 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3867800 2061400 1806500 2735100 1525100 1210000 1132800 536260 596490 0 0 0 0 0 0 0 0 0 0 0 0 22867 669 23851 120687;120688;120689;120690 121797;121798;121799;121800 121800 4 LSPQFPNEEDSFHK KHHSTPLIVCAPMFKLSPQFPNEEDSFHKF KLSPQFPNEEDSFHKFVAPEEVLPFTEGDI K L S H K F 0 0 1 1 0 1 2 0 1 0 1 1 0 2 2 2 0 0 0 0 0 0 14 0 1673.7686 P49770 P49770 274 287 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 3 0.0034769 32.275 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 0.7753 0.65711 21.163 5 Median 0.67703 0.63155 NaN 1 0 Median 0.76909 0.65711 NaN 1 0 Median 0.92923 0.94483 9.0057 2 0 Median 0.7753 0.65711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21962000 11713000 10249000 8143500 4624800 3518600 1292300 700750 591540 8807400 4379700 4427800 3718700 2008000 1710700 0 0 0 0 0 0 22868 2398 23852 120691;120692;120693;120694;120695 121801;121802;121803 121803 3 LSPQTLTTIVK EHHELRQAIGLMGYRLSPQTLTTIVKRYSK MGYRLSPQTLTTIVKRYSKNGRIFFDDYVA R L S V K R 0 0 0 0 0 1 0 0 0 1 2 1 0 0 1 1 3 0 0 1 0 0 11 0 1199.7125 H7C2Z6;H7BXD5;P28676 H7C2Z6 68 78 GCA Grancalcin yes no 2 0.0025039 53.124 By MS/MS By matching By matching By matching 1 1 1 1 1.1011 0.99489 21.301 4 Median 0.78699 0.73411 NaN 1 0 Median 1.1177 0.95573 NaN 1 0 Median 1.0847 1.0356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4672 1.2237 NaN 1 0 Median 12897000 7495200 5401400 10646000 6607000 4039400 584430 255130 329300 1321500 510360 811190 0 0 0 0 0 0 344250 122770 221480 22869 1242 23853 120696;120697;120698;120699 121804;121805 121805 2 LSPSPSSR SAYRKLLEGEEERLKLSPSPSSRVTVSRAS GEEERLKLSPSPSSRVTVSRASSSRSVRTT K L S S R V 0 1 0 0 0 0 0 0 0 0 1 0 0 0 2 4 0 0 0 0 0 0 8 0 829.42938 P20700;Q03252 P20700 390 397 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.061196 32.355 By MS/MS 2 1.0742 0.94014 4.0345 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0742 0.94014 4.0345 2 0 Median 605090 298140 306950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 605090 298140 306950 22870 2084;2709 23854 120700;120701 121806 121806 1 LSPSPTSQR HAYRKLLEGEEERLRLSPSPTSQRSRGRAS EEERLRLSPSPTSQRSRGRASSHSSQTQGG R L S Q R S 0 1 0 0 0 1 0 0 0 0 1 0 0 0 2 3 1 0 0 0 0 0 9 0 971.50361 P02545;A0A0C4DGC5;Q3BDU5 P02545 389 397 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0027865 69.598 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 3 0.87018 0.87248 12.892 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87018 0.90788 1.6331 2 0 Median 1.1727 0.99109 NaN 1 0 Median 0.75605 0.78102 7.3381 4 0 Median 1.15 0.99016 12.606 3 0 Median 19381000 10342000 9039400 0 0 0 0 0 0 3988800 2195100 1793700 459960 203470 256480 9890700 5638000 4252700 5041700 2305200 2736500 22871 1834;3010 23855 120702;120703;120704;120705;120706;120707;120708;120709;120710;120711 121807;121808;121809;121810;121811;121812;121813;121814;121815;121816;121817;121818;121819;121820;121821;121822 121821 16 LSPSTSGPHSHDYLPQER LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP STSGPHSHDYLPQEREGEGGLSLQVEPEWR K L S E R E 0 1 0 1 0 1 1 1 2 0 2 0 0 0 3 4 1 0 1 0 0 0 18 0 2006.9446 Q9HCE1;Q5JR04 Q9HCE1 968 985 MOV10 Putative helicase MOV-10 yes no 3;4 1.0923E-06 78.078 By MS/MS By MS/MS 2 2 0.83754 0.75759 24.583 4 Median 0.63102 0.61114 7.4463 2 0 Median 1.0896 0.92609 5.4674 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16356000 8915600 7440100 8974700 5767600 3207200 7381000 3148100 4233000 0 0 0 0 0 0 0 0 0 0 0 0 22872 4029 23856 120712;120713;120714;120715 121823;121824;121825;121826;121827;121828 121828 6 LSPTDNLPR LSEQQLQLWPSDVDKLSPTDNLPRGSRAHI PSDVDKLSPTDNLPRGSRAHITLGCAADVE K L S P R G 0 1 1 1 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 0 0 9 0 1011.5349 P09543 P09543 317 325 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.021425 62.546 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22873 1918 23857 120716 121829 121829 1 LSPVPVPR YRDDFYDRLFDYRGRLSPVPVPRAVPVKRP LFDYRGRLSPVPVPRAVPVKRPRVTVPLVR R L S P R A 0 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 8 0 863.52289 Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1 Q9UKM9 134 141 RALY RNA-binding protein Raly yes no 2 0.0062263 72.138 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 0.70035 0.63047 10.912 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70035 0.69301 NaN 1 0 Median 0.89482 0.76962 NaN 1 0 Median 0.60878 0.60625 3.3546 3 0 Plateau 0.79846 0.63627 10.595 4 0 Median 158670000 95104000 63566000 0 0 0 0 0 0 4429400 2395400 2034000 3578300 1802900 1775400 98167000 62813000 35354000 52495000 28093000 24403000 22874 4313 23858 120717;120718;120719;120720;120721;120722;120723;120724;120725 121830;121831;121832;121833;121834;121835;121836;121837;121838;121839;121840 121833 11 LSPWIRPDSK LLLSGRDWNTLIVGKLSPWIRPDSKVEKIR LIVGKLSPWIRPDSKVEKIRRNSEAAMLQE K L S S K V 0 1 0 1 0 0 0 0 0 1 1 1 0 0 2 2 0 1 0 0 0 0 10 1 1197.6506 O14744;G3V580;G3V5L5;G3V2X6;C9JSX3;G3V2L6 O14744 86 95 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2;3 0.0034753 98.233 By MS/MS By MS/MS By matching 3 1 1 1.08 1.0844 31.302 5 Median 1.08 1.0844 23.115 3 0 Median 1.7503 1.6076 NaN 1 0 Median 0.7163 0.7609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22039000 10290000 11749000 17974000 8403100 9570600 2007000 656930 1350000 2058000 1229900 828020 0 0 0 0 0 0 0 0 0 22875 1492 23859 120726;120727;120728;120729;120730 121841;121842;121843 121841 3 LSQDEIVLGTK ______________________________ REEKLSQDEIVLGTKAVIQGLETLRGEHRA K L S T K A 0 0 0 1 0 1 1 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 11 0 1201.6554 Q9H0B6;E9PQ02;A8MX29;E9PI24;E9PP09;C9JHT2;E9PM83 Q9H0B6 12 22 KLC2 Kinesin light chain 2 yes no 2 0.0072354 50.353 By MS/MS By MS/MS 1 2 1.076 0.93583 37.343 3 Median 1.5079 1.4302 NaN 1 1 Median 0.934 0.79735 22.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19366000 7879700 11486000 7839500 1865500 5974000 11526000 6014200 5511900 0 0 0 0 0 0 0 0 0 0 0 0 22876 3922 23860 120731;120732;120733 121844;121845 121845 2 LSQEDPDYGIR TDQGIKNLSVEDAARLSQEDPDYGIRDLFN DAARLSQEDPDYGIRDLFNAIATGKYPSWT R L S I R D 0 1 0 2 0 1 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1291.6044 P04040 P04040 253 263 CAT Catalase yes yes 2 0.00015793 103.55 By MS/MS By MS/MS By matching 1 2 1 1.0012 0.90473 148.48 4 Median 0.80289 0.75812 NaN 1 0 Median 0.37695 0.33987 163.46 2 0 Median 3.1145 3.8669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43109000 21786000 21323000 23522000 12793000 10729000 16066000 8216300 7849900 3521300 776590 2744700 0 0 0 0 0 0 0 0 0 22877 1841 23861 120734;120735;120736;120737 121846;121847;121848;121849 121847 4 LSQEEILGSTR SGLVLGQRDEPAGHRLSQEEILGSTRLVSQ AGHRLSQEEILGSTRLVSQGLEALRSEHQA R L S T R L 0 1 0 0 0 1 2 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1231.6408 Q9NSK0;C9J8T5;C9JXT5;C9JQU1;C9K0D5 Q9NSK0 17 27 KLC4 Kinesin light chain 4 yes no 2 0.01596 55.567 By MS/MS 1 1.4149 1.2273 NaN 1 Median NaN NaN NaN 0 0 Median 1.4149 1.2273 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2869600 1149900 1719700 0 0 0 2869600 1149900 1719700 0 0 0 0 0 0 0 0 0 0 0 0 22878 4105 23862 120738 121850 121850 1 LSQELEYLTEDVK ELEAEKRDLIRTNERLSQELEYLTEDVKRL ERLSQELEYLTEDVKRLNEKLKESNTTKGE R L S V K R 0 0 0 1 0 1 3 0 0 0 3 1 0 0 0 1 1 0 1 1 0 0 13 0 1565.7825 P12270 P12270 134 146 TPR Nucleoprotein TPR yes yes 2 0.0018839 68.069 By MS/MS 1 0.91519 0.98978 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91519 0.98978 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3751300 1919000 1832300 0 0 0 0 0 0 3751300 1919000 1832300 0 0 0 0 0 0 0 0 0 22879 1978 23863 120739 121851 121851 1 LSQELEYLTEDVKR ELEAEKRDLIRTNERLSQELEYLTEDVKRL RLSQELEYLTEDVKRLNEKLKESNTTKGEL R L S K R L 0 1 0 1 0 1 3 0 0 0 3 1 0 0 0 1 1 0 1 1 0 0 14 1 1721.8836 P12270 P12270 134 147 TPR Nucleoprotein TPR yes yes 2;3 1.402E-08 114.86 By MS/MS By matching By MS/MS By matching 3 3 4 2 0.93402 1.0204 19.828 12 Median 1.0538 1.1012 15.049 3 1 Plateau 1.1117 1.0363 19.505 3 0 Median 0.97558 1.1644 22.323 4 0 Linear 1.2732 1.2073 23.639 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124080000 62437000 61646000 38409000 18857000 19552000 9859000 4313700 5545300 74653000 38788000 35865000 1161800 477950 683880 0 0 0 0 0 0 22880 1978 23864 120740;120741;120742;120743;120744;120745;120746;120747;120748;120749;120750;120751 121852;121853;121854;121855;121856;121857;121858;121859;121860;121861;121862;121863 121862 12 LSQEQVDNFTLDINTAYAR NLSEKLSEQELQFRRLSQEQVDNFTLDINT QVDNFTLDINTAYARLRGIEQAVQSHAVAE R L S A R L 2 1 2 2 0 2 1 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 19 0 2197.0651 Q16891;B9A067;C9J406;H7C463 Q16891 527 545 IMMT MICOS complex subunit MIC60 yes no 2;3 3.8781E-05 49.627 By MS/MS 2 1.0562 1.0354 3.8623 2 Median 1.0562 1.0354 3.8623 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5165900 2315200 2850700 5165900 2315200 2850700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22881 3001 23865 120752;120753 121864;121865;121866 121865 3 LSQGVTLVVDR FSANRWEQVPLIKEKLSQGVTLVVDRYAFS IKEKLSQGVTLVVDRYAFSGVAFTGAKENF K L S D R Y 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 1 0 0 3 0 0 11 0 1185.6717 P23919;H7BZ20 P23919 87 97 DTYMK Thymidylate kinase yes no 2 0.00011201 123.75 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1.0842 1.0114 14.829 6 Median 0.9954 0.95877 2.5806 2 0 Median 1.2067 1.0208 NaN 1 0 Median 0.98924 1.0022 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1456 1.2113 NaN 1 0 Median 1.4706 1.377 NaN 1 0 Median 98127000 46350000 51777000 73137000 35110000 38027000 17265000 7723200 9541900 3566000 1865800 1700200 0 0 0 1361000 651830 709190 2798300 999220 1799100 22882 2120 23866 120754;120755;120756;120757;120758;120759 121867;121868;121869;121870;121871 121867 5 LSQIGVENTEENRR GILAADESVGSMAKRLSQIGVENTEENRRL RLSQIGVENTEENRRLYRQVLFSADDRVKK R L S R R L 0 2 2 0 0 1 3 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 14 1 1643.8227 J3KSV6;J3QKP5;A8MVZ9;P09972;C9J8F3;K7EKH5;J3QKK1 J3KSV6 44 57 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 3 0.066349 8.3844 By MS/MS 1 0.888 0.80275 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.888 0.80275 NaN 1 0 Median 2097700 1148200 949550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2097700 1148200 949550 22883 546 23867 120760 121872 121872 1 LSQILTDFPK YMRKVKFTQQNYHDRLSQILTDFPKLDDIH NYHDRLSQILTDFPKLDDIHPFYADLMNIL R L S P K L 0 0 0 1 0 1 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1160.6441 Q9BZE4;Q5T3R7 Q9BZE4 62 71 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.0014621 65.305 By matching By MS/MS By matching 1 1 1 0.95839 0.82708 25.655 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1912 1.2672 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8123 0.82708 NaN 1 0 Median 0.95839 0.7998 NaN 1 0 Median 21774000 11115000 10658000 0 0 0 0 0 0 3024000 1314600 1709400 0 0 0 18129000 9391900 8737300 620350 408780 211570 22884 3898 23868 120761;120762;120763 121873 121873 1 LSQLEEHLSQLQDNPPQEK DKKCLEEKNEILQGKLSQLEEHLSQLQDNP EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ K L S E K G 0 0 1 1 0 4 3 0 1 0 4 1 0 0 2 2 0 0 0 0 0 0 19 0 2232.1022 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 387 405 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 3.5305E-19 145.43 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 2 0.63237 0.67051 18.839 10 Median NaN NaN NaN 0 0 Median 0.81256 0.71954 NaN 1 0 Median 0.56799 0.62688 21.989 4 0 Median 0.77849 0.69889 25.681 3 0 Median 0.60658 0.62954 14.732 2 0 Median NaN NaN NaN 0 0 Median 236380000 136960000 99424000 0 0 0 19892000 9778600 10114000 158420000 93502000 64919000 12791000 6985000 5805700 45276000 26690000 18586000 0 0 0 22885 2905;77 23869 120764;120765;120766;120767;120768;120769;120770;120771;120772;120773 121874;121875;121876;121877;121878;121879;121880;121881;121882;121883;121884 121878 11 LSQLEGVNVER ERQELRILVGTNLVRLSQLEGVNVERYKQI NLVRLSQLEGVNVERYKQIVLTGILEQVVN R L S E R Y 0 1 1 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 2 0 0 11 0 1242.6568 Q96QK1 Q96QK1 227 237 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 7.0123E-19 160.36 By MS/MS By MS/MS By MS/MS 1 2 1 1.2646 1.1369 32.223 4 Median 1.1886 1.1239 NaN 1 1 Median 1.2646 1.0976 6.6001 2 0 Median NaN NaN NaN 0 0 Median 2.4336 2.097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73138000 32162000 40976000 34414000 16025000 18388000 36040000 15350000 20689000 0 0 0 2684200 786310 1897900 0 0 0 0 0 0 22886 3722 23870 120774;120775;120776;120777 121885;121886;121887;121888 121885 4 LSQLQVEAAR KRLSSGEDTTELRKKLSQLQVEAARLGILP ELRKKLSQLQVEAARLGILPVGRGKTMSSQ K L S A R L 2 1 0 0 0 2 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1113.6142 Q9P2N5;U3KPZ7 Q9P2N5 926 935 RBM27 RNA-binding protein 27 yes no 2 0.058148 42.395 By MS/MS 1 1.0406 0.92231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0406 0.92231 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 944530 421020 523510 0 0 0 0 0 0 0 0 0 944530 421020 523510 0 0 0 0 0 0 22887 4227 23871 120778 121889 121889 1 LSQMATILNLER LTTVTTWTIRDKFARLSQMATILNLERVTE FARLSQMATILNLERVTEILDYWGPNSGPL R L S E R V 1 1 1 0 0 1 1 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 12 0 1387.7493 A0A0A0MS45;J3KNI1;Q9H9E3;H3BQB2 A0A0A0MS45 713 724 COG4 Conserved oligomeric Golgi complex subunit 4 yes no 2 0.059116 42.001 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22888 175 23872 120779 121890 121890 1 LSQMAVQGLQQFK EFRAPTLASLENCMKLSQMAVQGLQQFKSP MKLSQMAVQGLQQFKSPLLQLPHIEEDNLR K L S F K S 1 0 0 0 0 4 0 1 0 0 2 1 1 1 0 1 0 0 0 1 0 0 13 0 1476.7759 Q9UGP8 Q9UGP8 369 381 SEC63 Translocation protein SEC63 homolog yes yes 2 4.6155E-05 89.247 By MS/MS By matching 1 1 0.4698 0.44101 121.05 2 Median 1.1374 1.0379 NaN 1 0 Median 0.19405 0.18738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10109000 5041200 5067600 9333800 4381100 4952700 775050 660100 114950 0 0 0 0 0 0 0 0 0 0 0 0 22889 4264 23873 120780;120781 121891;121892 121891 2 LSQMILDKK ISSLIKLSKADVERKLSQMILDKKFHGILD ADVERKLSQMILDKKFHGILDQGEGVLIIF K L S K K F 0 0 0 1 0 1 0 0 0 1 2 2 1 0 0 1 0 0 0 0 0 0 9 1 1074.6107 O00231 O00231 365 373 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.028892 39.022 By MS/MS 1 1.0102 0.97692 NaN 1 Median 1.0102 0.97692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1658200 790310 867860 1658200 790310 867860 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22890 1448 23874 120782 121893 121893 1 LSQNNFALGYK WLAGYQMSFDTAKSKLSQNNFALGYKAADF AKSKLSQNNFALGYKAADFQLHTHVNDGTE K L S Y K A 1 0 2 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1253.6404 Q9Y277 Q9Y277 164 174 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 0.00011247 124.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 1 5 1.0722 0.98141 40.623 13 Median 1.2381 1.1371 22.823 2 1 Median 1.0276 0.85702 44.322 3 1 Plateau 0.54946 0.5384 84.908 2 1 Median 1.3316 1.1185 NaN 1 0 Median 0.8811 0.90021 NaN 1 1 Median 1.2326 1.0056 9.0552 4 0 Median 291560000 141840000 149720000 214130000 103370000 110760000 18020000 8366900 9653000 9361800 5326400 4035400 6286800 2752100 3534600 24924000 12146000 12777000 18837000 9881400 8956100 22891 4377 23875 120783;120784;120785;120786;120787;120788;120789;120790;120791;120792;120793;120794;120795;120796;120797 121894;121895;121896;121897;121898;121899;121900;121901;121902;121903;121904;121905;121906 121896 13 LSQNSMHSSPASSNYQQTTISHSPSSR QNRYVQSGMMMSQYKLSQNSMHSSPASSNY SNYQQTTISHSPSSRFVPPQTSSGNRFMPQ K L S S R F 1 1 2 0 0 3 0 0 2 1 1 0 1 0 2 10 2 0 1 0 0 0 27 0 2918.3213 A0A590UJS4;Q6KC79 A0A590UJS4 128 154 NIPBL Nipped-B-like protein yes no 4 0.0059614 21.882 By MS/MS By matching 2 1 0.81065 0.90112 8.3137 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76766 0.8474 8.6933 2 0 Median NaN NaN NaN 0 0 Median 0.88919 0.93367 NaN 1 0 Median NaN NaN NaN 0 0 Median 9769000 5794900 3974100 0 0 0 0 0 0 5896400 3624000 2272400 0 0 0 3872600 2170900 1701700 0 0 0 22892 488 23876 120798;120799;120800 121907 121907 1 LSQPPLEQTQLQVK YRSALTQSQSAKQQKLSQPPLEQTQLQVKT KLSQPPLEQTQLQVKTLQCFQTKQKQTIHL K L S V K T 0 0 0 0 0 4 1 0 0 0 3 1 0 0 2 1 1 0 0 1 0 0 14 0 1607.8883 E9PMC9;Q7Z589;H0YET8 E9PMC9 856 869 C11orf30;EMSY Protein EMSY yes no 2 0.00010931 82.171 By MS/MS By matching 1 1 0.69664 0.68711 8.0891 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59997 0.64891 NaN 1 0 Median 0.80888 0.72756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5829300 3420600 2408700 0 0 0 0 0 0 5504100 3239500 2264500 325220 181080 144140 0 0 0 0 0 0 22893 966 23877 120801;120802 121908;121909 121909 2 LSQSDEDVIR LATPELGSSLKKKKRLSQSDEDVIRLIGQH KKKKRLSQSDEDVIRLIGQHLNGLGLNQTV R L S I R L 0 1 0 2 0 1 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 10 0 1160.5673 A0A499FIZ0;Q9H7D7;H0Y917 A0A499FIZ0 220 229 WDR26 WD repeat-containing protein 26 yes no 2 0.010508 62.823 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22894 475 23878 120803 121910 121910 1 LSQSGHMLLNLSR GEAGQNLLEMMACDRLSQSGHMLLNLSRGK DRLSQSGHMLLNLSRGKQDFLKEIVETFAN R L S S R G 0 1 1 0 0 1 0 1 1 0 4 0 1 0 0 3 0 0 0 0 0 0 13 0 1454.7664 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3 P49792 351 363 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2;3 1.7537E-11 109.6 By MS/MS By MS/MS By MS/MS 2 8 1 1.0755 1.1003 60.183 10 Median NaN NaN NaN 0 0 Median 0.51691 0.50615 146.05 2 1 Median 1.0697 1.1473 13.487 7 3 Median 1.1737 1.0223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96590000 46791000 49799000 0 0 0 6770700 3383800 3386900 86476000 41726000 44750000 3343400 1681300 1662200 0 0 0 0 0 0 22895 2401;525 23879;23880 120804;120805;120806;120807;120808;120809;120810;120811;120812;120813;120814 121911;121912;121913;121914;121915;121916;121917;121918;121919;121920 121918 210 10 LSQSLLELWR TGKPYVPLLEAEEVRLSQSLLELWRRRGPV AEEVRLSQSLLELWRRRGPVWQEAPQLPVD R L S W R R 0 1 0 0 0 1 1 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 10 0 1243.6925 H7BXY3;Q7L2E3 H7BXY3 385 394 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00072769 98.033 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.1805 1.2547 7.6224 5 Median 1.1158 1.1095 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1959 1.3002 NaN 1 0 Median 1.4987 1.2828 NaN 1 0 Median 1.1336 1.186 7.9615 2 0 Median NaN NaN NaN 0 0 Median 6816100 3144700 3671400 1717900 939400 778490 0 0 0 1575300 649340 925930 684970 275260 409710 2838000 1280700 1557300 0 0 0 22896 1244 23881 120815;120816;120817;120818;120819 121921;121922 121922 2 LSQTLSLVPR TPTYARLVQKAELVRLSQTLSLVPRLHWLL AELVRLSQTLSLVPRLHWLLVEDAEGPTPL R L S P R L 0 1 0 0 0 1 0 0 0 0 3 0 0 0 1 2 1 0 0 1 0 0 10 0 1112.6554 O94766;G3V150;E9PNA1 O94766 96 105 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes no 2 0.0011397 87.308 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.95593 0.95159 23.842 4 Median 0.85178 0.84489 NaN 1 1 Median 1.5933 1.3837 NaN 1 0 Median 0.98898 1.0718 NaN 1 0 Median 0.92398 0.83539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16730000 6426200 10304000 6523700 2742900 3780900 4722200 1772900 2949300 5167500 1769700 3397800 316500 140660 175850 0 0 0 0 0 0 22897 1101 23882 120820;120821;120822;120823 121923;121924;121925 121923 3 LSQVEGEHQLWK RLKNQIQDQEQLVSKLSQVEGEHQLWKEQN VSKLSQVEGEHQLWKEQNLELRNLTVELEQ K L S W K E 0 0 0 0 0 2 2 1 1 0 2 1 0 0 0 1 0 1 0 1 0 0 12 0 1452.7361 P49454 P49454 2541 2552 CENPF Centromere protein F yes yes 2;3 0.010714 49.06 By MS/MS By MS/MS 2 1 0.69172 0.69423 42.953 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.921 0.9954 50.96 2 2 Median 0.69172 0.66397 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13198000 7494800 5702700 0 0 0 0 0 0 11331000 6473200 4857700 1866600 1021600 845000 0 0 0 0 0 0 22898 2383 23883 120824;120825;120826 121926;121927;121928 121927 3 LSQVSDSVSGQTVVDPK MRKIGQARNTLMDMRLSQVSDSVSGQTVVD QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG R L S P K G 0 0 0 2 0 2 0 1 0 0 1 1 0 0 1 4 1 0 0 4 0 0 17 0 1744.8843 O94906 O94906 255 271 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 3.0961E-13 118.13 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 0.99934 0.91907 10.602 6 Median 0.93966 0.9144 NaN 1 0 Median 1.0861 0.94632 NaN 1 0 Median 0.74971 0.80754 NaN 1 0 Median 1.1235 0.98375 8.8969 2 0 Median NaN NaN NaN 0 0 Median 0.95574 0.7872 NaN 1 0 Median 68754000 34971000 33783000 6165400 3153300 3012100 2880700 1270000 1610800 35703000 19300000 16403000 21246000 10010000 11236000 0 0 0 2759400 1238200 1521100 22899 1735 23884 120827;120828;120829;120830;120831;120832 121929;121930;121931;121932;121933;121934;121935;121936;121937;121938;121939;121940 121936 12 LSRPFQSEIFAK SAIDKRSGEKVAIKKLSRPFQSEIFAKRAY IKKLSRPFQSEIFAKRAYRELLLLKHMQHE K L S A K R 1 1 0 0 0 1 1 0 0 1 1 1 0 2 1 2 0 0 0 0 0 0 12 1 1421.7667 O15264 O15264 56 67 MAPK13 Mitogen-activated protein kinase 13 yes yes 2 5.1431E-05 94.363 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22900 1535 23885 120833 121941 121941 1 LSRPNIFILNNR LMQTEKHFFHKVSERLSRPNIFILNNRWDA SERLSRPNIFILNNRWDASASEPEYMEEVR R L S N R W 0 2 3 0 0 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 12 1 1455.831 O95140 O95140 248 259 MFN2 Mitofusin-2 yes yes 3 0.0013227 59.57 By MS/MS 1 1.0697 1.0968 NaN 1 Median 1.0697 1.0968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490200 1886600 1603600 3490200 1886600 1603600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22901 1747 23886 120834 121942 121942 1 LSRPPPPATPSSMDVNSR SGPILGPGSFPSDDRLSRPPPPATPSSMDV PPPPATPSSMDVNSRQLVGGSQAFYQRAPY R L S S R Q 1 2 1 1 0 0 0 0 0 0 1 0 1 0 5 4 1 0 0 1 0 0 18 1 1907.9523 O14686 O14686 2772 2789 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 3.8061E-06 51.819 By MS/MS By MS/MS 1 1 0.21527 0.23658 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21527 0.23658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7558200 6020100 1538100 0 0 0 0 0 0 7558200 6020100 1538100 0 0 0 0 0 0 0 0 0 22902 1490 23887 120835;120836 121943;121944 121943 2 LSSAGLIYLHFGHK ETMSSLSPGKPWQTKLSSAGLIYLHFGHKL KLSSAGLIYLHFGHKLLAQLLGTSEEDSMV K L S H K L 1 0 0 0 0 0 0 2 2 1 3 1 0 1 0 2 0 0 1 0 0 0 14 0 1541.8354 Q9HB07;F8VQQ3 Q9HB07 129 142 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 3 8.4922E-05 73.624 By MS/MS 2 0.97327 0.92188 6.5539 2 Median 0.97327 0.92188 6.5539 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11929000 6059600 5869600 11929000 6059600 5869600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22903 4014 23888 120837;120838 121945;121946 121945 2 LSSAHVYLR IKHGWPEDIWFHVDKLSSAHVYLRLHKGEN WFHVDKLSSAHVYLRLHKGENIEDIPKEVL K L S L R L 1 1 0 0 0 0 0 0 1 0 2 0 0 0 0 2 0 0 1 1 0 0 9 0 1044.5716 Q86WR0;G3V121;B7Z2L8 Q86WR0 45 53 CCDC25 Coiled-coil domain-containing protein 25 yes no 2 0.0066328 53.968 By MS/MS 1 0.82439 0.7717 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82439 0.7717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1341300 736740 604560 0 0 0 0 0 0 1341300 736740 604560 0 0 0 0 0 0 0 0 0 22904 3295 23889 120839 121947 121947 1 LSSAIAFTYNPR LFLAEHHKLLLYDGKLSSAIAFTYNPRATD DGKLSSAIAFTYNPRATDAQLCLESSPKDN K L S P R A 2 1 1 0 0 0 0 0 0 1 1 0 0 1 1 2 1 0 1 0 0 0 12 0 1338.6932 E9PEM5;A0A494C1L5;P50851;A0A494C0R9 E9PEM5 413 424 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.061231 24.776 By MS/MS By matching By matching 1 1 1 1.1272 1.191 28.397 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1272 1.191 NaN 1 0 Median 1.4935 1.2975 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87307 0.76444 NaN 1 0 Median 9859400 3206000 6653500 0 0 0 0 0 0 9232100 2944300 6287700 536320 212340 323980 0 0 0 91067 49296 41772 22905 470 23890 120840;120841;120842 121948 121948 1 LSSDQNDKAASAAREELK LELEQTYQAKLDSAKLSSDQNDKAASAARE DQNDKAASAAREELKEARMRLESLSYQLSG K L S L K E 4 1 1 2 0 1 2 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 18 2 1931.9548 Q03252 Q03252 291 308 LMNB2 Lamin-B2 yes yes 4 0.027657 14.928 By MS/MS 2 0.75963 0.88197 28.532 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75963 0.88197 28.532 2 0 Median NaN NaN NaN 0 0 Median 10448000 6080400 4367300 0 0 0 0 0 0 0 0 0 0 0 0 10448000 6080400 4367300 0 0 0 22906 2709 23891 120843;120844 121949;121950;121951;121952 121952 4 LSSEDKETMEK SLKNQIGDKEKLGGKLSSEDKETMEKAVEE LGGKLSSEDKETMEKAVEEKIEWLESHQDA K L S E K A 0 0 0 1 0 0 3 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 11 1 1295.5915 P11021 P11021 586 596 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.0091067 32.051 By matching By MS/MS By matching 1 1 1 1.5571 1.6186 21.858 3 Median 1.5571 1.6186 NaN 1 0 Median 1.3575 1.2743 NaN 1 0 Median 1.7024 1.9718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3061300 1214500 1846900 616440 255480 360960 1582600 681040 901520 862340 277970 584370 0 0 0 0 0 0 0 0 0 22907 1948 23892 120845;120846;120847 121953;121954 121954 2 LSSEMNTSTVNSAR EELEQTYHAKLENARLSSEMNTSTVNSARE RLSSEMNTSTVNSAREELMESRMRIESLSS R L S A R E 1 1 2 0 0 0 1 0 0 0 1 0 1 0 0 4 2 0 0 1 0 0 14 0 1495.6937 P20700;E9PBF6;A0A0D9SFE5 P20700 277 290 LMNB1 Lamin-B1 yes no 2 2.1948E-68 246.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 5 0.96578 0.93466 33.18 15 Median NaN NaN NaN 0 0 Median 0.76517 0.6633 NaN 1 0 Median 0.89913 0.90456 9.8464 2 0 Median 1.4231 1.1959 73.657 3 1 Median 0.84318 0.85012 3.3609 4 0 Median 1.4926 1.1273 11.023 5 0 Linear 263550000 127410000 136140000 0 0 0 4188000 2304200 1883900 51464000 26497000 24967000 21334000 8412900 12921000 129070000 67701000 61368000 57498000 22500000 34998000 22908 2084 23893 120848;120849;120850;120851;120852;120853;120854;120855;120856;120857;120858;120859;120860;120861;120862 121955;121956;121957;121958;121959;121960;121961;121962;121963;121964;121965;121966;121967;121968;121969;121970;121971;121972;121973;121974;121975;121976;121977;121978;121979;121980 121977 25 LSSEMNTSTVNSAREELMESR EELEQTYHAKLENARLSSEMNTSTVNSARE TSTVNSAREELMESRMRIESLSSQLSNLQK R L S S R M 1 2 2 0 0 0 4 0 0 0 2 0 2 0 0 5 2 0 0 1 0 0 21 1 2370.0791 P20700;E9PBF6;A0A0D9SFE5 P20700 277 297 LMNB1 Lamin-B1 yes no 3 1.0149E-33 179.78 By matching By MS/MS By MS/MS 1 6 4 0.86999 0.93017 26.735 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60842 0.67895 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84486 0.91961 6.1173 6 0 Median 1.5641 1.4139 9.5215 4 0 Median 201130000 103700000 97430000 0 0 0 0 0 0 2925800 1868800 1057000 0 0 0 194460000 100490000 93964000 3752300 1343700 2408600 22909 2084 23894;23895 120863;120864;120865;120866;120867;120868;120869;120870;120871;120872;120873 121981;121982;121983;121984;121985;121986;121987;121988;121989;121990;121991;121992 121986 841;848 12 LSSEQEKEEIASK TKMNLKPHRSREYLRLSSEQEKEEIASKSA LRLSSEQEKEEIASKSALLRQIKEVTVHND R L S S K S 1 0 0 0 0 1 4 0 0 1 1 2 0 0 0 3 0 0 0 0 0 0 13 1 1476.7308 Q96Q89 Q96Q89 204 216 KIF20B Kinesin-like protein KIF20B yes yes 3 0.054752 14.988 By MS/MS 1 0.70111 0.80416 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70111 0.80416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080400 1140500 939970 0 0 0 0 0 0 2080400 1140500 939970 0 0 0 0 0 0 0 0 0 22910 3717 23896 120874 121993 121993 1 LSSETYSQAK DVKILLTQENPFFRKLSSETYSQAKDLAKG PFFRKLSSETYSQAKDLAKGSIVLKYEPDS K L S A K D 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 3 1 0 1 0 0 0 10 0 1112.535 Q08J23 Q08J23 641 650 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0079033 47.198 By MS/MS 1 1.4711 1.3065 NaN 1 Median NaN NaN NaN 0 0 Median 1.4711 1.3065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1580200 515210 1065000 0 0 0 1580200 515210 1065000 0 0 0 0 0 0 0 0 0 0 0 0 22911 2745 23897 120875 121994;121995 121995 2 LSSEVEALRR GHLREKQRTQEELRRLSSEVEALRRQLLQE EELRRLSSEVEALRRQLLQEQESVKQAHLR R L S R R Q 1 2 0 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 10 1 1158.6357 P15924 P15924 1657 1666 DSP Desmoplakin yes yes 2 6.192E-05 138.54 By matching By matching By MS/MS 1 1 1 0.98161 0.95649 23.705 3 Plateau NaN NaN NaN 0 0 Median 0.7346 0.6885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76712 0.82985 NaN 1 0 Median 1.2561 1.1024 NaN 1 0 Median 17679000 8145400 9533500 0 0 0 3684900 1873100 1811800 0 0 0 0 0 0 6896600 3249300 3647300 7097500 3023000 4074400 22912 2021 23898 120876;120877;120878 121996;121997 121997 2 LSSFTQHHRPVIAVHSGIAR DKSPFNSPSPQDSPRLSSFTQHHRPVIAVH QHHRPVIAVHSGIARSPHPSSALHFPTTSI R L S A R S 2 2 0 0 0 1 0 1 3 2 1 0 0 1 1 3 1 0 0 2 0 0 20 1 2212.1978 A0A286YEX4;P08651 A0A286YEX4 368 387 NFIC Nuclear factor 1 C-type yes no 5 0.010811 21.353 By MS/MS By matching 2 2 0.97493 0.97856 8.8971 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86411 0.93444 8.2822 2 0 Median 1.1101 1.0284 8.7814 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10797000 5819700 4977300 0 0 0 0 0 0 6267400 3393100 2874400 4529500 2426600 2102900 0 0 0 0 0 0 22913 350 23899 120879;120880;120881;120882 121998;121999 121998 2 LSSGFDDIDLPSAVK VHGFNSYGSHRTLQRLSSGFDDIDLPSAVK LSSGFDDIDLPSAVKYLMASDPNLQVLGAA R L S V K Y 1 0 0 3 0 0 0 1 0 1 2 1 0 1 1 3 0 0 0 1 0 0 15 0 1562.7828 Q9Y446;E9PKC4 Q9Y446 312 326 PKP3 Plakophilin-3 yes no 2 0.00032131 51.252 By MS/MS By matching 1 1 1.0752 0.9799 12.595 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90765 0.8964 NaN 1 0 Median 1.2737 1.0712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7632200 4436100 3196100 0 0 0 0 0 0 7470000 4360800 3109200 162200 75307 86888 0 0 0 0 0 0 22914 4437 23900 120883;120884 122000 122000 1 LSSGLVSPAPSFYSK LTKAAMMAMSEYEDRLSSGLVSPAPSFYSK LSSGLVSPAPSFYSKEYDNEGTVDYSETSS R L S S K E 1 0 0 0 0 0 0 1 0 0 2 1 0 1 2 5 0 0 1 1 0 0 15 0 1538.7981 Q15911 Q15911 2890 2904 ZFHX3 Zinc finger homeobox protein 3 yes yes 2 0.013124 44.299 By MS/MS 1 1.6041 1.7254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6041 1.7254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304200 1305900 3998300 0 0 0 0 0 0 5304200 1305900 3998300 0 0 0 0 0 0 0 0 0 22915 2977 23901 120885 122001 122001 1 LSSGNEENKKEEDNDEIK LKISASLKQALDKLKLSSGNEENKKEEDND GNEENKKEEDNDEIKIGTSCKNGGCSKTYQ K L S I K I 0 0 3 2 0 0 5 1 0 1 1 3 0 0 0 2 0 0 0 0 0 0 18 2 2076.9447 Q9UHD1;E9PPQ5 Q9UHD1 135 152 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 4 0.010582 22.646 By MS/MS By matching 2 1 0.79222 0.82525 29.869 3 Plateau NaN NaN NaN 0 0 Median 0.76062 0.77256 9.3308 2 0 Median NaN NaN NaN 0 0 Median 0.49553 0.46645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2874600 1628300 1246300 0 0 0 2697700 1555600 1142100 0 0 0 176950 72697 104250 0 0 0 0 0 0 22916 4275 23902 120886;120887;120888 122002 122002 1 LSSIIDCTGTASYHGFLPVLVR LRTLTSIVHLERTPKLSSIIDCTGTASYHG TGTASYHGFLPVLVRNCIQAMIDPSMDPYP K L S V R N 1 1 0 1 1 0 0 2 1 2 3 0 0 1 1 3 2 0 1 2 0 0 22 0 2405.2413 Q7Z6Z7 Q7Z6Z7 343 364 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 3.1805E-13 83.423 By MS/MS 1 1.1984 1.0202 NaN 1 Median NaN NaN NaN 0 0 Median 1.1984 1.0202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2730200 1304600 1425500 0 0 0 2730200 1304600 1425500 0 0 0 0 0 0 0 0 0 0 0 0 22917 3253 23903 120889 122003 122003 1 LSSLDNLK QAQAARLPPQDFLDRLSSLDNLKASVSQVE PQDFLDRLSSLDNLKASVSQVEADLKMLRT R L S L K A 0 0 1 1 0 0 0 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 8 0 888.49165 Q07065 Q07065 533 540 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0032257 100.19 By MS/MS By MS/MS By matching 1 2 1 1.3439 1.2474 17.952 4 Median 1.0606 0.99504 NaN 1 0 Median 1.4557 1.2474 12.742 2 0 Median 1.3944 1.4835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40249000 16250000 23999000 12381000 5710900 6669900 24809000 9401300 15408000 3059100 1137800 1921300 0 0 0 0 0 0 0 0 0 22918 2730 23904 120890;120891;120892;120893 122004;122005;122006;122007 122004 4 LSSLIILMPHHVEPLER EKEKLQIVEMPLAHKLSSLIILMPHHVEPL SLIILMPHHVEPLERLEKLLTKEQLKIWMG K L S E R L 0 1 0 0 0 0 2 0 2 2 4 0 1 0 2 2 0 0 0 1 0 0 17 0 1983.0976 P50454;E9PPV6;E9PR70;E9PKH2 P50454 264 280 SERPINH1 Serpin H1 yes no 3;4 1.6739E-07 86.641 By matching By matching By MS/MS By matching By matching By matching 2 2 4 4 1 2 0.92337 0.85005 39.7 15 Median 0.45679 0.44594 101.37 2 0 Median 0.94591 0.83646 1.5211 2 0 Median 0.81245 0.80843 3.2175 4 0 Median 1.3453 1.171 12.528 4 0 Linear 0.84607 0.85005 NaN 1 0 Median 1.3232 1.16 4.0461 2 0 Median 46418000 25087000 21331000 5290200 4006300 1283900 935910 420110 515800 33334000 17601000 15734000 5515600 2397400 3118200 704790 401520 303270 636930 260610 376320 22919 2414 23905;23906 120894;120895;120896;120897;120898;120899;120900;120901;120902;120903;120904;120905;120906;120907;120908 122008;122009;122010;122011;122012;122013 122011 1123 6 LSSLNLDDHAK SVRNPRARVVVLRVKLSSLNLDDHAKKKLI LRVKLSSLNLDDHAKKKLIKLVGERYCKTT K L S A K K 1 0 1 2 0 0 0 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1211.6146 P82673 P82673 177 187 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 2 0.036759 29.087 By matching By MS/MS 1 1 1.0964 1.0072 15.183 2 Median 1.1461 1.1213 NaN 1 0 Median 1.0489 0.90464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1900200 779940 1120200 1053600 417260 636290 846610 362680 483940 0 0 0 0 0 0 0 0 0 0 0 0 22920 2652 23907 120909;120910 122014 122014 1 LSSLPFQK WEGQQFQGKAAIVEKLSSLPFQKIQHSITA KAAIVEKLSSLPFQKIQHSITAQDHQPTPD K L S Q K I 0 0 0 0 0 1 0 0 0 0 2 1 0 1 1 2 0 0 0 0 0 0 8 0 918.51747 H3BRV9;P61970 H3BRV9 56 63 NUTF2 Nuclear transport factor 2 yes no 2 0.0024312 119.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 0.99969 0.89736 15.834 9 Median 0.9878 0.87421 0.43694 2 0 Median 1.0603 0.86868 5.6153 2 0 Median 1.079 1.0596 20.908 2 0 Median 0.99619 0.77009 21.63 2 0 Median 0.869 0.93486 NaN 1 0 Median NaN NaN NaN 0 0 Median 525250000 258600000 266650000 233220000 115900000 117320000 232060000 112970000 119100000 38770000 19805000 18965000 17387000 8170700 9216800 3808700 1755600 2053200 0 0 0 22921 1231 23908 120911;120912;120913;120914;120915;120916;120917;120918;120919 122015;122016;122017;122018;122019;122020;122021;122022;122023;122024;122025;122026;122027;122028;122029;122030;122031 122030 17 LSSMNPAFVMPFLR QVFEIRELAICTVGRLSSMNPAFVMPFLRK RLSSMNPAFVMPFLRKMLIQILTELEHSGI R L S L R K 1 1 1 0 0 0 0 0 0 0 2 0 2 2 2 2 0 0 0 1 0 0 14 0 1608.8156 P42345 P42345 718 731 MTOR Serine/threonine-protein kinase mTOR yes yes 2 0.018125 45.137 By MS/MS 1 0.71536 0.71828 NaN 1 Median 0.71536 0.71828 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1232100 826940 405140 1232100 826940 405140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22922 2310 23909 120920 122032 122032 1 LSSNAVSQITR EIQDVSCAWKELNRKLSSNAVSQITRMCLL LNRKLSSNAVSQITRMCLLKGNMGVCFDVP K L S T R M 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 11 0 1174.6306 Q9BQ39;A0A087WVC1 Q9BQ39 612 622 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.00014771 88.681 By MS/MS By MS/MS 1 1 1.2041 1.2709 3.244 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2117 1.3004 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1966 1.2421 NaN 1 0 Median NaN NaN NaN 0 0 Median 7427900 3686900 3741000 0 0 0 0 0 0 1460800 757310 703450 0 0 0 5967200 2929600 3037600 0 0 0 22923 3781 23910 120921;120922 122033;122034;122035 122034 3 LSSPATLNSR NFNGNTLDNDIMLIKLSSPATLNSRVATVS IMLIKLSSPATLNSRVATVSLPRSCAAAGT K L S S R V 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 3 1 0 0 0 0 0 10 0 1044.5564 CON__P00761 CON__P00761 98 107 yes yes 2 3.6162E-35 178.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 13 11 5 6 0.036664 0.03234 144.69 46 Median 0.094771 0.090728 308.7 4 4 Median 0.063386 0.0525 72.122 7 7 Median 0.029919 0.031749 141.32 13 13 Median 0.022271 0.018838 118.05 11 11 Median 0.080396 0.082529 151.21 5 5 Median 0.044387 0.035181 147.39 6 6 Median 748800000 700360000 48447000 59253000 41438000 17815000 82774000 76830000 5944400 333270000 320200000 13071000 119210000 113350000 5860800 49961000 47089000 2871600 104330000 101450000 2883400 + 22924 737 23911 120923;120924;120925;120926;120927;120928;120929;120930;120931;120932;120933;120934;120935;120936;120937;120938;120939;120940;120941;120942;120943;120944;120945;120946;120947;120948;120949;120950;120951;120952;120953;120954;120955;120956;120957;120958;120959;120960;120961;120962;120963;120964;120965;120966;120967;120968 122036;122037;122038;122039;122040;122041;122042;122043;122044;122045;122046;122047;122048;122049;122050;122051;122052;122053;122054;122055;122056;122057;122058;122059;122060;122061;122062;122063;122064;122065;122066;122067;122068;122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084;122085;122086;122087;122088;122089;122090;122091;122092;122093;122094;122095;122096;122097;122098;122099;122100;122101;122102;122103;122104;122105;122106;122107;122108;122109;122110 122048 75 LSSQISAGEEK NLTVNGGGWNEKSVKLSSQISAGEEKWNSV KSVKLSSQISAGEEKWNSVSPASAGKRKTE K L S E K W 1 0 0 0 0 1 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 11 0 1147.5721 Q86UE4;E5RJU9;H0YB56 Q86UE4 293 303 MTDH Protein LYRIC yes no 2 0.00047715 68.893 By MS/MS By matching 2 1 0.98726 0.87134 12.558 3 Plateau NaN NaN NaN 0 0 Median 0.91933 0.80264 11.614 2 1 Median 0.88697 0.94619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5967100 3022700 2944400 0 0 0 4566700 2300400 2266400 1400400 722340 678040 0 0 0 0 0 0 0 0 0 22925 3276 23912 120969;120970;120971 122111;122112;122113 122111 3 LSSQISAGEEKWNSVSPASAGK NLTVNGGGWNEKSVKLSSQISAGEEKWNSV GEEKWNSVSPASAGKRKTEPSAWSQDTGDA K L S G K R 3 0 1 0 0 1 2 2 0 1 1 2 0 0 1 6 0 1 0 1 0 0 22 1 2232.1022 Q86UE4;E5RJU9;H0YB56 Q86UE4 293 314 MTDH Protein LYRIC yes no 3 2.2947E-07 48.229 By MS/MS 1 0.85945 0.8863 NaN 1 Median 0.85945 0.8863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4476400 2255000 2221400 4476400 2255000 2221400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22926 3276 23913 120972 122114 122114 1 LSSQITLLEAQNR LSSIELEELKAENEKLSSQITLLEAQNRTG EKLSSQITLLEAQNRTGEADREVSEISIVD K L S N R T 1 1 1 0 0 2 1 0 0 1 3 0 0 0 0 2 1 0 0 0 0 0 13 0 1471.7995 Q14789;E7EU81;H0Y867 Q14789 504 516 GOLGB1 Golgin subfamily B member 1 yes no 2 3.4945E-07 110.08 By MS/MS By MS/MS By matching 1 2 1 1.2802 1.1147 23.351 4 Median 0.96674 0.94738 NaN 1 0 Median 1.3126 1.1147 17.891 2 0 Median 1.3881 1.5592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19530000 8745000 10785000 11354000 5103100 6250700 7255700 3177400 4078400 920780 464510 456270 0 0 0 0 0 0 0 0 0 22927 2900 23914 120973;120974;120975;120976 122115;122116;122117 122115 3 LSSQPVVVESSHPYTDDTSTSGTVK VTELEDVATDSQSGRLSSQPVVVESSHPYT SHPYTDDTSTSGTVKIPGAEGLRVEFDRQC R L S V K I 0 0 0 2 0 1 1 1 1 0 1 1 0 0 2 6 4 0 1 4 0 0 25 0 2620.2504 O95714;A0A3B3IRP6;A0A0J9YVP0 O95714 3607 3631 HERC2 E3 ubiquitin-protein ligase HERC2 yes no 3 1.8864E-17 69.704 By MS/MS 1 1.0748 0.94763 NaN 1 Median NaN NaN NaN 0 0 Median 1.0748 0.94763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9449200 5096200 4353000 0 0 0 9449200 5096200 4353000 0 0 0 0 0 0 0 0 0 0 0 0 22928 1786 23915 120977 122118 122118 1 LSSSAEFTGMTR AYSEVIETLPDGTERLSSSAEFTGMTRQDA TERLSSSAEFTGMTRQDAFLALTQKARGKR R L S T R Q 1 1 0 0 0 0 1 1 0 0 1 0 1 1 0 3 2 0 0 0 0 0 12 0 1285.5973 E9PHM2;Q15031;A0A499FJL2;A0A494C1E0 E9PHM2 365 376 LARS2 Probable leucine--tRNA ligase, mitochondrial yes no 2 6.7262E-06 119.16 By MS/MS By MS/MS By matching 1 1 1 1.2654 1.077 5.8703 3 Median 1.0972 1.0609 NaN 1 0 Median 1.3652 1.1823 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2654 1.077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10157000 4591500 5565100 5051300 2483400 2567900 4611600 1921600 2690000 0 0 0 493710 186510 307200 0 0 0 0 0 0 22929 933 23916 120978;120979;120980 122119;122120;122121;122122 122119 4 LSSSFSSR RGRPQVRLPVKTRGKLSSSFSSRGQQQEPG PVKTRGKLSSSFSSRGQQQEPGRYPSRSQQ K L S S R G 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 Q9NRL2 Q9NRL2 1278 1285 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.016855 52.403 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 5 1.352 1.0834 24.31 10 Median NaN NaN NaN 0 0 Median 1.9052 1.6055 NaN 1 0 Median 1.8978 1.8528 NaN 1 1 Median 1.4231 1.1704 6.7694 2 1 Median 1.4927 1.4735 NaN 1 0 Median 1.2728 0.95564 5.8252 5 0 Median 163680000 72928000 90747000 0 0 0 755540 215010 540530 28500000 10125000 18375000 8035200 3308400 4726800 2918500 1175500 1742900 123470000 58104000 65362000 22930 4084 23917 120981;120982;120983;120984;120985;120986;120987;120988;120989;120990 122123;122124;122125;122126;122127;122128;122129;122130 122128 8 LSSSIIHEIDSILGNKPYSK DQLMENIGAIQVLPKLSSSIIHEIDSILGN IHEIDSILGNKPYSKKDYRS__________ K L S S K K 0 0 1 1 0 0 1 1 1 4 2 2 0 0 1 5 0 0 1 0 0 0 20 1 2200.1739 A0A590UJB6;Q13303 A0A590UJB6 374 393 KCNAB2 Voltage-gated potassium channel subunit beta-2 yes no 3 0.028189 14.31 By MS/MS 1 1.3238 1.1925 NaN 1 Median NaN NaN NaN 0 0 Median 1.3238 1.1925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4123600 1709300 2414300 0 0 0 4123600 1709300 2414300 0 0 0 0 0 0 0 0 0 0 0 0 22931 484 23918 120991 122131 122131 1 LSSSLAVSTHPDAMNQQLETAQK LLRSLSDKLSDLDNKLSSSLAVSTHPDAMN THPDAMNQQLETAQKMKQEIQQEKKQIKVA K L S Q K M 3 0 1 1 0 3 1 0 1 0 3 1 1 0 1 4 2 0 0 1 0 0 23 0 2455.2013 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2673 2695 DST Dystonin yes no 3 0.00034495 41.256 By MS/MS 1 1.0114 1.0114 NaN 1 Median 1.0114 1.0114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7714200 4106800 3607400 7714200 4106800 3607400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22932 934 23919 120992 122132 122132 1 LSSSQGTIETSLQDIDSR AELGEISDIHTKLLRLSSSQGTIETSLQDI SQGTIETSLQDIDSRLSPGGSLADAWAHQE R L S S R L 0 1 0 2 0 2 1 1 0 2 2 0 0 0 0 5 2 0 0 0 0 0 18 0 1935.9385 A0A494C0R4;A0A494C0A8;A0A494C1M6;A0A494C0X2;A0A494C167;A0A494C148;A0A494C045;Q9UHD2 A0A494C0R4 467 484 TBK1 Serine/threonine-protein kinase TBK1 yes no 2 0.066691 30.059 By MS/MS 1 0.85541 0.84807 NaN 1 Median 0.85541 0.84807 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537400 877630 659760 1537400 877630 659760 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22933 456 23920 120993 122133 122133 1 LSSTQEEVHQLR ALEAALVEKGEFALRLSSTQEEVHQLRRGI ALRLSSTQEEVHQLRRGIEKLRVRIEADEK R L S L R R 0 1 0 0 0 2 2 0 1 0 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1425.7212 P49454 P49454 2107 2118 CENPF Centromere protein F yes yes 3 0.00033447 55.452 By MS/MS By MS/MS 1 1 1.006 0.99502 9.9485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94946 1.0675 NaN 1 0 Median 1.066 0.92743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2269000 1077600 1191300 0 0 0 0 0 0 1404700 714300 690430 864230 363350 500880 0 0 0 0 0 0 22934 2383 23921 120994;120995 122134;122135;122136;122137 122136 4 LSSTQEEVHQLRR ALEAALVEKGEFALRLSSTQEEVHQLRRGI LRLSSTQEEVHQLRRGIEKLRVRIEADEKK R L S R R G 0 2 0 0 0 2 2 0 1 0 2 0 0 0 0 2 1 0 0 1 0 0 13 1 1581.8223 P49454 P49454 2107 2119 CENPF Centromere protein F yes yes 3 0.065974 9.2875 By MS/MS By matching 1 1 1.1173 1.1308 2.3621 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0118 1.112 NaN 1 0 Median 1.2338 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1915600 844360 1071200 0 0 0 0 0 0 1498900 655820 843090 416650 188540 228110 0 0 0 0 0 0 22935 2383 23922 120996;120997 122138 122138 1 LSSTQQSLAEK AMEKVKQELESMKAKLSSTQQSLAEKETHL MKAKLSSTQQSLAEKETHLTNLRAERRKHL K L S E K E 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 11 0 1190.6143 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPD6;A0A0U1RQN0 X6RLX0 899 909 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.025188 33.229 By MS/MS By MS/MS 1 1 1.1664 0.99381 8.3218 2 Median NaN NaN NaN 0 0 Median 1.0927 0.93702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.245 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1775400 893850 881520 0 0 0 1257400 665460 591990 0 0 0 517920 228390 289530 0 0 0 0 0 0 22936 3311 23923 120998;120999 122139;122140 122139 2 LSSTQQSLAEKETHLTNLR AMEKVKQELESMKAKLSSTQQSLAEKETHL QQSLAEKETHLTNLRAERRKHLEEVLEMKQ K L S L R A 1 1 1 0 0 2 2 0 1 0 4 1 0 0 0 3 3 0 0 0 0 0 19 1 2155.1233 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPD6;A0A0U1RQN0 X6RLX0 899 917 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 8.5294E-05 38.577 By MS/MS 1 0.88036 0.91693 NaN 1 Median 0.88036 0.91693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8858600 3964700 4893900 8858600 3964700 4893900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22937 3311 23924 121000 122141 122141 1 LSSTSVYDLTPGEK ACMELRLSNPSLVKKLSSTSVYDLTPGEKM KLSSTSVYDLTPGEKMKILHALCGKLLTLV K L S E K M 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 3 2 0 1 1 0 0 14 0 1495.7406 Q9NRL2;A0A087WWN7 Q9NRL2 600 613 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes no 2 7.4957E-08 100.72 By MS/MS By MS/MS 1 1 0.99125 0.99227 41.369 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67154 0.74061 NaN 1 0 Median 1.4632 1.3294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15596000 8435500 7160400 0 0 0 0 0 0 14152000 7760800 6390900 1444200 674710 769500 0 0 0 0 0 0 22938 4084 23925 121001;121002 122142;122143 122142 2 LSSTWEGIQAGK LYKEAGISKDRILIKLSSTWEGIQAGKELE LIKLSSTWEGIQAGKELEEQHGIHCNMTLL K L S G K E 1 0 0 0 0 1 1 2 0 1 1 1 0 0 0 2 1 1 0 0 0 0 12 0 1275.6459 P37837;F2Z393 P37837 143 154 TALDO1 Transaldolase yes no 2 4.8053E-06 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.1819 1.0579 7.8254 6 Median 1.1431 1.0392 2.278 2 0 Median 1.2926 1.0937 12.469 2 0 Median 1.1012 1.0597 NaN 1 0 Median 1.4207 1.2 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 285540000 131220000 154330000 223580000 103710000 119870000 48979000 21067000 27912000 11149000 5749900 5398800 1836300 688510 1147800 0 0 0 0 0 0 22939 2270 23926 121003;121004;121005;121006;121007;121008 122144;122145;122146;122147;122148;122149;122150;122151;122152 122151 9 LSSVVTQHDSK TDYQLSKEYTLDVYRLSSVVTQHDSKKAGA DVYRLSSVVTQHDSKKAGAEVVKQVEHPLL R L S S K K 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 3 1 0 0 2 0 0 11 0 1199.6146 P54577;A0A0C4DGZ5 P54577 136 146 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2;3 0.00078212 56.548 By matching By MS/MS 2 2 1.2304 1.1189 12.129 4 Median 1.2388 1.2008 12.74 2 0 Median 1.2304 1.057 10.785 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7950700 3402600 4548200 1788600 752060 1036500 6162100 2650500 3511600 0 0 0 0 0 0 0 0 0 0 0 0 22940 2482 23927 121009;121010;121011;121012 122153;122154;122155;122156 122154 4 LSSVVTQHDSKK TDYQLSKEYTLDVYRLSSVVTQHDSKKAGA VYRLSSVVTQHDSKKAGAEVVKQVEHPLLS R L S K K A 0 0 0 1 0 1 0 0 1 0 1 2 0 0 0 3 1 0 0 2 0 0 12 1 1327.7096 P54577;A0A0C4DGZ5 P54577 136 147 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 0.05169 13.137 By matching By MS/MS By matching 1 1 1 1.202 1.1281 10.942 3 Plateau 1.1738 1.1262 NaN 1 0 Median 1.202 1.1281 NaN 1 0 Median 0.87393 0.93256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2454600 1164400 1290200 696430 306210 390220 1695100 822930 872130 63115 35297 27819 0 0 0 0 0 0 0 0 0 22941 2482 23928 121013;121014;121015 122157 122157 1 LSSWDQAETPGHTPSLR WDQTADQTPGATPKKLSSWDQAETPGHTPS SWDQAETPGHTPSLRWDETPGRAKGSETPG K L S L R W 1 1 0 1 0 1 1 1 1 0 2 0 0 0 2 3 2 1 0 0 0 0 17 0 1880.9017 O75533 O75533 215 231 SF3B1 Splicing factor 3B subunit 1 yes yes 3 6.0984E-06 66.022 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.70637 0.7278 8.8936 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69059 0.75931 0.75974 2 2 Median 0.78847 0.66878 NaN 1 0 Median 0.70637 0.7278 NaN 1 0 Median 0.74617 0.61936 NaN 1 0 Median 42996000 25091000 17905000 0 0 0 0 0 0 26300000 15495000 10805000 7344200 4050700 3293600 9022100 5350600 3671500 329560 194890 134660 22942 1683 23929 121016;121017;121018;121019;121020 122158;122159;122160;122161;122162;122163 122159 6 LSTAANTGQIDDPQEQHR LVGLKGNLEMTLASRLSTAANTGQIDDPQE AANTGQIDDPQEQHRVISSNLALIQV____ R L S H R V 2 1 1 2 0 3 1 1 1 1 1 0 0 0 1 1 2 0 0 0 0 0 18 0 1979.9297 D6R9S7;D6RHE3;D6RDB0;Q96GZ6;D6RDM3 D6R9S7 124 141 SLC41A3 Solute carrier family 41 member 3 yes no 3 0.00020104 49.224 By MS/MS 1 1.0449 0.88553 NaN 1 Median NaN NaN NaN 0 0 Median 1.0449 0.88553 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4015100 1741300 2273800 0 0 0 4015100 1741300 2273800 0 0 0 0 0 0 0 0 0 0 0 0 22943 806 23930 121021 122164 122164 1 LSTACPGR MVNNPKIHLAQSLHKLSTACPGRVPSMVST LAQSLHKLSTACPGRVPSMVSTSLNAEALQ K L S G R V 1 1 0 0 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 8 0 860.41744 P55060 P55060 935 942 CSE1L Exportin-2 yes yes 2 0.01731 48.756 By MS/MS 1 0.86385 0.76136 NaN 1 Median NaN NaN NaN 0 0 Median 0.86385 0.76136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 978530 542150 436380 0 0 0 978530 542150 436380 0 0 0 0 0 0 0 0 0 0 0 0 22944 2493 23931 121022 122165 122165 1 LSTDHIPILYR RRGSPLLIGVRSEHKLSTDHIPILYRTART SEHKLSTDHIPILYRTARTQIGSKFTRWGS K L S Y R T 0 1 0 1 0 0 0 0 1 2 2 0 0 0 1 1 1 0 1 0 0 0 11 0 1326.7296 Q06210 Q06210 217 227 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.0060707 34.231 By MS/MS By matching 1 1 1.1914 1.109 9.4131 2 Median 1.2392 1.1853 NaN 1 0 Median 1.1454 1.0376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6138100 2808700 3329400 5231200 2436600 2794500 906930 372050 534870 0 0 0 0 0 0 0 0 0 0 0 0 22945 2723 23932 121023;121024 122166 122166 1 LSTHLQQEGSELLWYLAEK DGTVGIECPDYRGNRLSTHLQQEGSELLWY LQQEGSELLWYLAEKDMNSKPEFLETVFLL R L S E K D 1 0 0 0 0 2 3 1 1 0 5 1 0 0 0 2 1 1 1 0 0 0 19 0 2244.1426 Q7L8L6 Q7L8L6 533 551 FASTKD5 FAST kinase domain-containing protein 5 yes yes 3 0.021702 15.09 By MS/MS 1 1.2247 1.0584 NaN 1 Median NaN NaN NaN 0 0 Median 1.2247 1.0584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1670400 690790 979570 0 0 0 1670400 690790 979570 0 0 0 0 0 0 0 0 0 0 0 0 22946 3228 23933 121025 122167 122167 1 LSTIALALGVER LRNEDVQLRLNSIKKLSTIALALGVERTRS IKKLSTIALALGVERTRSELLPFLTDTIYD K L S E R T 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1241.7343 P30153;C9J9C1;E9PPI5;E9PNM7;E9PHZ6;P30154 P30153 35 46 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 0.0044584 43.512 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1581 1.0003 31.737 5 Median 1.1993 1.1293 NaN 1 0 Median 0.84191 0.71231 48.025 2 0 Median NaN NaN NaN 0 0 Median 1.1581 1.0072 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0088 0.82143 NaN 1 0 Median 49026000 21731000 27295000 34079000 15269000 18810000 14345000 6155600 8189200 0 0 0 141300 62666 78635 0 0 0 461170 243860 217310 22947 2190;2191 23934 121026;121027;121028;121029;121030 122168;122169;122170;122171 122168 4 LSTLLNHNNDTEEEER KVLNILEKNIQDGSKLSTLLNHNNDTEEEE STLLNHNNDTEEEERLWRDLIMERVTKSAD K L S E R L 0 1 3 1 0 0 4 0 1 0 3 0 0 0 0 1 2 0 0 0 0 0 16 0 1912.8763 A0A590UJS4;Q6KC79 A0A590UJS4 1279 1294 NIPBL Nipped-B-like protein yes no 3 6.4732E-08 96.993 By MS/MS By MS/MS By MS/MS 1 2 1 1.0281 1.0085 25.772 4 Median NaN NaN NaN 0 0 Median 1.3188 1.1113 NaN 1 1 Median 0.71804 0.78359 31.084 2 0 Median 1.185 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20381000 9076900 11305000 0 0 0 4876800 2053800 2823100 12254000 5751000 6503500 3250200 1272200 1978000 0 0 0 0 0 0 22948 488 23935 121031;121032;121033;121034 122172;122173;122174;122175;122176;122177 122174 6 LSTLVETTLK CAYQILVQVKEVLSKLSTLVETTLKETEKI EVLSKLSTLVETTLKETEKITVCGDTHGQF K L S L K E 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 3 0 0 1 0 0 10 0 1103.6438 P53041;H0YDU8 P53041 223 232 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 2 0.0005177 91.867 By MS/MS By matching By matching By matching 2 3 1 1 1.0738 0.96194 15.282 7 Median 0.97135 0.92067 1.3378 2 0 Median 1.0978 0.96194 23.585 3 0 Median 0.99486 0.99808 NaN 1 0 Median 1.1966 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26104000 12708000 13396000 11859000 5929800 5929300 6612700 3138900 3473800 5107700 2482700 2625000 2524300 1156800 1367400 0 0 0 0 0 0 22949 1177 23936 121035;121036;121037;121038;121039;121040;121041 122178;122179 122179 2 LSTPAGVQVILR PSNIKRKNKHGWVRRLSTPAGVQVILRRML VRRLSTPAGVQVILRRMLKGRKSLSH____ R L S L R R 1 1 0 0 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 12 0 1252.7503 M0R226;Q9BQ48 M0R226 162 173 MRPL34 Ribosomal protein L34;39S ribosomal protein L34, mitochondrial yes no 2 0.0012722 54.982 By MS/MS By matching 1 1 0.98115 0.96854 0.99537 2 Median 0.98662 0.96175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9757 0.97538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6602600 3354000 3248600 4349100 2152000 2197200 0 0 0 2253500 1202100 1051400 0 0 0 0 0 0 0 0 0 22950 1434 23937 121042;121043 122180 122180 1 LSTPDVVSPFGTPFGSSVMNR PSVPPLVKTSLFSSKLSTPDVVSPFGTPFG VSPFGTPFGSSVMNRMAGIFDVNTCYGSPQ K L S N R M 0 1 1 1 0 0 0 2 0 0 1 0 1 2 3 4 2 0 0 3 0 0 21 0 2194.0729 Q9BTX1 Q9BTX1 438 458 NDC1 Nucleoporin NDC1 yes yes 2;3 0.044086 19.075 By MS/MS By MS/MS By matching 3 4 1 0.7031 0.73882 12.25 8 Median 0.82669 0.8216 15.69 3 0 Median NaN NaN NaN 0 0 Median 0.65431 0.72666 2.9644 4 0 Median 0.85852 0.74314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18350000 11427000 6922400 9767500 6063500 3704000 0 0 0 8439100 5287200 3151900 143350 76832 66516 0 0 0 0 0 0 22951 3831 23938 121044;121045;121046;121047;121048;121049;121050;121051 122181;122182;122183;122184;122185 122181 5 LSTPSTGGSVDIISVK CAKSTVTTTTTTVTKLSTPSTGGSVDIISV STPSTGGSVDIISVKEQSKTVVTTTVTDSL K L S V K E 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 4 2 0 0 2 0 0 16 0 1559.8407 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1761 1776 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 4.9843E-05 79.633 By MS/MS By MS/MS By matching 2 3 1 0.92324 0.89647 19.897 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82073 0.89126 19.404 2 0 Median 1.0008 0.90757 11.359 3 0 Median 0.59355 0.62808 NaN 1 0 Median NaN NaN NaN 0 0 Median 52188000 28439000 23749000 0 0 0 0 0 0 46085000 25136000 20949000 3881800 1978000 1903800 2221100 1324800 896280 0 0 0 22952 2762 23939 121052;121053;121054;121055;121056;121057 122186;122187;122188;122189;122190;122191;122192 122186 7 LSTQEGLVQELQK ELKNLRACVLELEERLSTQEGLVQELQKKQ ERLSTQEGLVQELQKKQVELQEERRGLMSQ R L S Q K K 0 0 0 0 0 3 2 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 0 1471.7882 Q9BW19 Q9BW19 220 232 KIFC1 Kinesin-like protein KIFC1 yes yes 2 1.8505E-06 94.409 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22953 3860 23940 121058 122193 122193 1 LSTSSYSQVR EYKKIHQDMIRDLLRLSTSSYSQVRNKAQQ RDLLRLSTSSYSQVRNKAQQTFFAALGAYN R L S V R N 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 4 1 0 1 1 0 0 10 0 1126.5619 Q14997 Q14997 974 983 PSME4 Proteasome activator complex subunit 4 yes yes 2 0.0042827 53.756 By MS/MS By MS/MS By matching 1 1 1 1.1078 1.0179 22.821 3 Median 1.1078 1.1086 NaN 1 0 Median 1.2066 1.0179 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85899 0.72047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4288100 2094100 2194000 882180 413120 469060 2281100 1102700 1178400 0 0 0 1124700 578270 546470 0 0 0 0 0 0 22954 2906 23941 121059;121060;121061 122194;122195;122196 122196 3 LSVAAQEAAR EEAEKMKQVAEEAARLSVAAQEAARLRQLA EEAARLSVAAQEAARLRQLAEEDLAQQRAL R L S A R L 4 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q15149 Q15149 2420 2429 PLEC Plectin yes yes 2 2.2942E-08 169.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1.2762 1.1078 8.2454 7 Median 1.1248 1.1078 NaN 1 0 Median 1.436 1.1485 NaN 1 0 Median 0.95163 1.0242 NaN 1 0 Median 1.28 1.114 NaN 1 0 Median 1.2717 1.3064 NaN 1 0 Median 1.2798 1.0482 0.56233 2 0 Median 73286000 30828000 42458000 8656200 4123200 4533100 27374000 10638000 16736000 4931400 2389500 2541900 1330600 580860 749770 11276000 4767600 6508400 19718000 8328600 11390000 22955 2933 23942 121062;121063;121064;121065;121066;121067;121068 122197;122198;122199;122200;122201;122202;122203;122204;122205;122206;122207;122208 122203 12 LSVADSQAEAK PTITEGVAAALLLLKLSVADSQAEAKLSSF LLLKLSVADSQAEAKLSSFWQLIVDEKKQV K L S A K L 3 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1117.5615 Q92616 Q92616 499 509 GCN1L1 Translational activator GCN1 yes yes 2 0.0028371 51.276 By matching By MS/MS 1 2 1.5845 1.523 20.401 3 Median 1.5845 1.523 NaN 1 0 Median 1.5301 1.3348 26.768 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3421400 1097300 2324100 546980 240490 306480 2874400 856780 2017700 0 0 0 0 0 0 0 0 0 0 0 0 22956 3544 23943 121069;121070;121071 122209;122210;122211;122212 122210 4 LSVASTPISQR INKGGVRTPVPPRGRLSVASTPISQRRSQG PRGRLSVASTPISQRRSQGRSCGPASQSTL R L S Q R R 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 1 0 0 1 0 0 11 0 1157.6404 Q9BXS6;H0YMD2 Q9BXS6 239 249 NUSAP1 Nucleolar and spindle-associated protein 1 yes no 2 0.0011704 60.518 By MS/MS 1 0.51549 0.54107 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51549 0.54107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2577000 1695000 882010 0 0 0 0 0 0 2577000 1695000 882010 0 0 0 0 0 0 0 0 0 22957 3881 23944 121072 122213 122213 1 LSVDYGKK GGGTGSGFTSLLMERLSVDYGKKSKLEFSI TSLLMERLSVDYGKKSKLEFSIYPAPQVST R L S K K S 0 0 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 8 1 908.49673 Q9BQE3;F5H5D3;C9JJQ8;C9JEV8;C9JQ00;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;F8VQQ4 P68363 157 164 TUBA1C;TUBA4A;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2 0.0046939 99.375 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 5 1 1 1 3 1.1959 1.1402 31.934 14 Median 1.1875 1.2094 16.121 3 0 Median 1.1289 1.034 23.298 5 0 Median 1.1166 1.1671 NaN 1 0 Median 1.2555 1.255 NaN 1 0 Median 2.3579 2.516 NaN 1 1 Median 1.211 1.0793 30.714 3 0 Median 188500000 82989000 105510000 48617000 20931000 27686000 107920000 48606000 59313000 10666000 5039400 5626200 411860 172880 238980 6902400 1980100 4922300 13982000 6260100 7721800 22958 2633;3212;1034 23945 121073;121074;121075;121076;121077;121078;121079;121080;121081;121082;121083;121084;121085;121086 122214;122215;122216;122217;122218;122219;122220;122221;122222;122223;122224;122225;122226;122227;122228 122221 15 LSVEADINGLR ADDFRTKFETEQALRLSVEADINGLRRVLD QALRLSVEADINGLRRVLDELTLARADLEM R L S L R R 1 1 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1185.6354 CON__Q04695;Q04695;F5GWP8;CON__P19001 CON__Q04695 181 191 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.022371 52.579 By MS/MS 1 1.163 1.1563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.163 1.1563 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7279600 3310500 3969100 0 0 0 0 0 0 7279600 3310500 3969100 0 0 0 0 0 0 0 0 0 + 22959 768;760 23946 121087 122229 122229 1 LSVEADINGLRR ADDFRTKFETEQALRLSVEADINGLRRVLD ALRLSVEADINGLRRVLDELTLARADLEMQ R L S R R V 1 2 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1341.7365 CON__Q04695;Q04695;F5GWP8;CON__P19001 CON__Q04695 181 192 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 5.6753E-08 139.38 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 2 3 0.72299 0.65544 49.68 11 Median 0.90887 0.91782 NaN 1 0 Median 0.63129 0.56931 NaN 1 0 Median 1.2702 1.3753 0.84489 2 0 Median 0.70268 0.65544 39.941 3 0 Median 1.5255 1.6552 NaN 1 0 Median 0.72299 0.63588 17.1 3 0 Plateau 110680000 58075000 52608000 6191400 3366600 2824800 604880 325410 279470 37930000 17465000 20465000 34593000 21115000 13477000 14421000 6075100 8346000 16944000 9728000 7215800 + 22960 768;760 23947 121088;121089;121090;121091;121092;121093;121094;121095;121096;121097;121098;121099;121100 122230;122231;122232;122233;122234;122235;122236;122237;122238;122239 122235 10 LSVEEAVAAGVVGGEIQEK QAATGFVIDPVRNLRLSVEEAVAAGVVGGE EAVAAGVVGGEIQEKLLSAERAVTGYTDPY R L S E K L 3 0 0 0 0 1 4 3 0 1 1 1 0 0 0 1 0 0 0 4 0 0 19 0 1883.984 P58107;A0A075B730 P58107 2281 2299 EPPK1 Epiplakin yes no 2;3 1.2124E-17 132.24 By MS/MS By MS/MS By MS/MS 5 4 1 1.1691 1.0749 8.1032 10 Median 1.2442 1.0634 10.181 5 0 Linear 1.2079 1.0688 6.1691 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1594 1.1908 NaN 1 0 Median NaN NaN NaN 0 0 Median 96456000 41929000 54527000 60021000 25624000 34397000 35100000 15595000 19505000 0 0 0 0 0 0 1335200 709510 625650 0 0 0 22961 2520 23948 121101;121102;121103;121104;121105;121106;121107;121108;121109;121110 122240;122241;122242;122243;122244;122245;122246;122247;122248;122249;122250;122251 122241 12 LSVEESEAAGDGVDTK EKVRAKLVPSQEETKLSVEESEAAGDGVDT SVEESEAAGDGVDTKVAQGATEKSPEDKVQ K L S T K V 2 0 0 2 0 0 3 2 0 0 1 1 0 0 0 2 1 0 0 2 0 0 16 0 1605.737 P49321 P49321 427 442 NASP Nuclear autoantigenic sperm protein yes yes 2 7.0766E-10 126.34 By MS/MS By MS/MS 1 1 1.2323 1.1174 20.326 2 Median 0.99797 0.96782 NaN 1 0 Median 1.5217 1.2901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16337000 7182400 9154200 8274100 3943300 4330800 8062400 3239000 4823300 0 0 0 0 0 0 0 0 0 0 0 0 22962 2376 23949 121111;121112 122252;122253;122254;122255;122256 122254 5 LSVEGFAVDK YNRYQGGFLISRLIKLSVEGFAVDKMAGEV SRLIKLSVEGFAVDKMAGEVKAFFESHPAP K L S D K M 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 2 0 0 10 0 1063.555 E9PLK3;P55786 E9PLK3 850 859 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.0015108 82.749 By MS/MS By MS/MS 2 1 1.008 0.96955 7.0611 3 Median 1.0029 0.9646 0.72365 2 2 Median 1.245 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61457000 29599000 31859000 57358000 27841000 29517000 4099100 1757300 2341800 0 0 0 0 0 0 0 0 0 0 0 0 22963 960 23950 121113;121114;121115 122257;122258;122259 122258 3 LSVFSTVDAPVAPSDK AKSGKFTQQDIDEAKLSVFSTVDAPVAPSD SVFSTVDAPVAPSDKGMDHFLYGLSDEMKQ K L S D K G 2 0 0 2 0 0 0 0 0 0 1 1 0 1 2 3 1 0 0 3 0 0 16 0 1631.8407 Q5JRX3;A0A0A0MRX9;B1APQ0 Q5JRX3 957 972 PITRM1 Presequence protease, mitochondrial yes no 2 8.8767E-05 73.848 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.0714 0.94997 13.498 5 Median 0.74103 0.72062 NaN 1 0 Median 1.0759 0.94666 NaN 1 0 Median 0.92316 1.0109 NaN 1 0 Median 1.1137 0.9598 1.4551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17514000 9117900 8395900 6534200 3670300 2863900 1849000 826700 1022300 8062700 4126700 3935900 1068000 494180 573820 0 0 0 0 0 0 22964 3050 23951 121116;121117;121118;121119;121120 122260;122261;122262;122263 122260 4 LSVGEEELR L S L R 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1030.5295 REV__H3BSH2 yes yes 2 0.020605 52.716 By MS/MS 1 0.15393 0.12919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15393 0.12919 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 718300 562280 156020 0 0 0 0 0 0 0 0 0 718300 562280 156020 0 0 0 0 0 0 + 22965 4525 23952 121121 122264 122264 1 LSVISVEDPPQR EVIKPGDLGVDLTSKLSVISVEDPPQRTAG TSKLSVISVEDPPQRTAGVKVETTEDLVAK K L S Q R T 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 2 0 0 0 2 0 0 12 0 1338.7143 P38117 P38117 222 233 ETFB Electron transfer flavoprotein subunit beta yes yes 2 4.1172E-06 121.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.1194 0.94717 28.419 7 Median 0.75808 0.71602 4.6685 2 0 Median 1.1883 1.0147 9.7422 2 0 Median 0.71844 0.68964 NaN 1 0 Median 1.1815 0.981 NaN 1 0 Median 1.4979 1.5032 NaN 1 0 Median NaN NaN NaN 0 0 Median 319950000 173090000 146860000 204070000 114370000 89704000 39464000 17759000 21705000 62476000 35607000 26869000 5486900 2424300 3062600 8458000 2936600 5521400 0 0 0 22966 2272 23953 121122;121123;121124;121125;121126;121127;121128 122265;122266;122267;122268;122269;122270;122271;122272;122273;122274;122275;122276;122277;122278 122268 14 LSVKEHTEEDFKGR IFLEIIQSSLPEGVRLSVKEHTEEDFKGRF RLSVKEHTEEDFKGRFKARPELEELLAKLK R L S G R F 0 1 0 1 0 0 3 1 1 0 1 2 0 1 0 1 1 0 0 1 0 0 14 2 1673.8373 F5H702;Q96GC5;F5H8D0 F5H702 85 98 MRPL48 39S ribosomal protein L48, mitochondrial yes no 4 0.0054959 28.632 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 0.9946 1.0455 36.633 5 Median 0.9946 1.0455 NaN 1 0 Median 0.8233 0.84241 NaN 1 0 Median 0.5887 0.70662 NaN 1 0 Median 1.4474 1.1938 NaN 1 0 Median 1.5989 1.8419 NaN 1 0 Median NaN NaN NaN 0 0 Median 5277600 2870600 2407000 1564900 891340 673540 766610 422090 344520 1966800 1166200 800570 770690 306830 463860 208710 84192 124510 0 0 0 22967 1044 23954 121129;121130;121131;121132;121133 122279;122280;122281 122279 3 LSVLGAITSVQQR DEFGTASNIKSRVNRLSVLGAITSVQQRLK NRLSVLGAITSVQQRLKLYNKVPPNGLVVY R L S Q R L 1 1 0 0 0 2 0 1 0 1 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1370.7882 B7Z7P8;P62495;I3L492;D6RJE8;D6RCB3 B7Z7P8 55 67 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 6.7811E-07 138.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 3 1.2609 1.0922 33.059 10 Median 1.2494 1.1888 NaN 1 0 Median 1.2725 1.0726 14.246 3 0 Median 1.3247 1.2913 NaN 1 0 Median 1.155 0.99828 NaN 1 0 Median 1.7791 1.7935 NaN 1 0 Median 1.0021 0.83571 34.78 3 0 Plateau 74719000 32370000 42349000 14194000 6325300 7868300 16112000 6773700 9338700 32832000 13918000 18915000 6601000 3071400 3529600 2595000 925700 1669300 2384500 1356000 1028500 22968 638 23955 121134;121135;121136;121137;121138;121139;121140;121141;121142;121143 122282;122283;122284;122285;122286;122287;122288;122289 122284 8 LSVLIHNSDEHK LFVFGYRAQKIRSKKLSVLIHNSDEHKDIQ SKKLSVLIHNSDEHKDIQSCTVEVHFQKII K L S H K D 0 0 1 1 0 0 1 0 2 1 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1390.7205 Q9NTJ3;E9PD53;C9JR83;C9JWF0;C9IYK2;C9JJ64;C9JVD8;C9J578;C9J9E4 Q9NTJ3 142 153 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.024012 22.578 By MS/MS 1 1.7588 1.5992 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7588 1.5992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 813270 315760 497510 0 0 0 0 0 0 0 0 0 813270 315760 497510 0 0 0 0 0 0 22969 4108 23956 121144 122290 122290 1 LSVLLLEK KEGPPPASPAQLLSKLSVLLLEKMGGSSGA PAQLLSKLSVLLLEKMGGSSGALYGLFLTA K L S E K M 0 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 8 0 913.58482 Q3LXA3;H0YCY6;I3L252 Q3LXA3 435 442 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.0076735 66.073 By MS/MS By matching 1 2 1.6404 1.4634 22.717 3 Median 1.0378 0.99925 NaN 1 0 Median 1.6879 1.4803 1.6189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5886700 2614800 3271800 2807400 1398400 1409000 3079200 1216400 1862800 0 0 0 0 0 0 0 0 0 0 0 0 22970 3012 23957 121145;121146;121147 122291;122292 122291 2 LSVLTAENAMLNSK NEETLTQTISQYNGRLSVLTAENAMLNSKL RLSVLTAENAMLNSKLENEKQSKERLEAEV R L S S K L 2 0 2 0 0 0 1 0 0 0 3 1 1 0 0 2 1 0 0 1 0 0 14 0 1489.781 E7ESJ3;Q9UPS8 E7ESJ3 994 1007 ANKRD26 Ankyrin repeat domain-containing protein 26 yes no 2 0.0088083 50.292 By MS/MS 1 1.239 1.1627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.239 1.1627 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75803000 35238000 40565000 0 0 0 0 0 0 75803000 35238000 40565000 0 0 0 0 0 0 0 0 0 22971 886 23958 121148 122293 122293 321 1 LSVLVDDYQMDFHPSPVVLK VERQVSTAMAEEIRRLSVLVDDYQMDFHPS DDYQMDFHPSPVVLKVYKNELHRHIEEGLG R L S L K V 0 0 0 3 0 1 0 0 1 0 3 1 1 1 2 2 0 0 1 4 0 0 20 0 2301.1715 O95140 O95140 441 460 MFN2 Mitofusin-2 yes yes 3 0.00020707 45.704 By matching By MS/MS 1 1 0.94515 0.87864 16.501 2 Median 1.0075 0.98738 NaN 1 0 Median 0.88666 0.78188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3507900 1648800 1859100 922310 452130 470180 2585600 1196600 1389000 0 0 0 0 0 0 0 0 0 0 0 0 22972 1747 23959 121149;121150 122294 122294 0 LSVMLSTR FHVDRRSKYDILMEKLSVMLSTRTNHIETL YDILMEKLSVMLSTRTNHIETLGKLREELG K L S T R T 0 1 0 0 0 0 0 0 0 0 2 0 1 0 0 2 1 0 0 1 0 0 8 0 905.50044 Q12789 Q12789 262 269 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.0026497 125.81 By matching By MS/MS 1 1 1.0299 1.0088 17.618 2 Median NaN NaN NaN 0 0 Median 1.0173 0.89068 NaN 1 0 Median 1.0427 1.1427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9668500 4725100 4943400 0 0 0 1979400 933740 1045600 7689100 3791400 3897800 0 0 0 0 0 0 0 0 0 22973 2758 23960 121151;121152 122295;122296 122295 2 LSVNSHFMK VLYVLKLYDKIDPEKLSVNSHFMKDLGLDS KIDPEKLSVNSHFMKDLGLDSLDQVEIIMA K L S M K D 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 2 0 0 0 1 0 0 9 0 1061.5328 I3L505;O14561 I3L505 28 36 NDUFAB1 Acyl carrier protein;Acyl carrier protein, mitochondrial yes no 2 0.0027536 69.825 By MS/MS By MS/MS 2 2 1.5248 1.2517 20.369 3 Median 0.97765 0.89223 NaN 1 0 Median 1.5438 1.2687 1.9118 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16284000 8114400 8169300 7103700 4563300 2540400 9180000 3551000 5629000 0 0 0 0 0 0 0 0 0 0 0 0 22974 1294 23961;23962 121153;121154;121155;121156 122297;122298;122299;122300;122301 122297 427 5 LSVNSVTAGDYSR DYLSGVLILASELSRLSVNSVTAGDYSRPL SRLSVNSVTAGDYSRPLHISTFINELDSGF R L S S R P 1 1 1 1 0 0 0 1 0 0 1 0 0 0 0 3 1 0 1 2 0 0 13 0 1367.6681 E9PGT1;Q15631;H7C1D4 E9PGT1 149 161 TSN Translin yes no 2 6.9476E-16 191.53 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2422 1.1548 33.564 4 Median 1.2075 1.149 NaN 1 0 Median 1.2757 1.079 NaN 1 0 Median 1.2096 1.1607 NaN 1 0 Median 2.6637 2.2022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86087000 37892000 48195000 66180000 29331000 36849000 12382000 5240800 7141300 6188300 2942400 3245900 1336400 377750 958680 0 0 0 0 0 0 22975 925 23963 121157;121158;121159;121160 122302;122303;122304;122305;122306;122307 122302 6 LSVPMPLPTVLLDR HEDGEREGSPRTYSRLSVPMPLPTVLLDRK RLSVPMPLPTVLLDRKIETLLTEWNKNPDM R L S D R K 0 1 0 1 0 0 0 0 0 0 4 0 1 0 3 1 1 0 0 2 0 0 14 0 1549.8902 Q8TDJ6 Q8TDJ6 480 493 DMXL2 DmX-like protein 2 yes yes 2 0.0019092 45.973 By MS/MS 1 0.50304 0.50056 NaN 1 Median 0.50304 0.50056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 805830 543390 262450 805830 543390 262450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22976 3472 23964 121161 122308 122308 1 LSVQDYSTEGLWK ELMNWLNEVHDKLSKLSVQDYSTEGLWKQQ SKLSVQDYSTEGLWKQQSELRVLQEDILLR K L S W K Q 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 2 1 1 1 1 0 0 13 0 1524.746 E9PHM6;F6QMI7;Q03001;A0A0U1RQJ2 E9PHM6 3550 3562 DST Dystonin yes no 2 0.0015521 51.927 By MS/MS 1 0.80251 0.87273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80251 0.87273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2861500 1385200 1476300 0 0 0 0 0 0 2861500 1385200 1476300 0 0 0 0 0 0 0 0 0 22977 934 23965 121162 122309;122310 122309 2 LSVQGEVSTFTGK TAHDEIIPMSIRKGKLSVQGEVSTFTGKLY GKLSVQGEVSTFTGKLYIEFVKGYYDNPKV K L S G K L 0 0 0 0 0 1 1 2 0 0 1 1 0 1 0 2 2 0 0 2 0 0 13 0 1351.6983 F5H1S8;Q14165;H0YG07 F5H1S8 95 107 MLEC Malectin yes no 2 0.0001375 133.81 By MS/MS By matching By matching By matching 1 1 1 1 1.29 1.0939 16.041 4 Median 1.0363 0.94113 NaN 1 0 Median 1.3728 1.1507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3347 1.3706 NaN 1 0 Median 1.2468 1.04 NaN 1 0 Median 28558000 13714000 14844000 23072000 11247000 11825000 4168100 1933000 2235100 0 0 0 0 0 0 973800 355130 618670 343800 178070 165740 22978 1021 23966 121163;121164;121165;121166 122311 122311 1 LSVQSAISTQPEAVK LLQDLSEKVRAVGQRLSVQSAISTQPEAVK LSVQSAISTQPEAVKQQLEETSEIRSDLEQ R L S V K Q 2 0 0 0 0 2 1 0 0 1 1 1 0 0 1 3 1 0 0 2 0 0 15 0 1556.841 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4706 4720 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 2.1961E-19 136.7 By MS/MS By MS/MS By MS/MS 1 1 1 0.87362 0.82003 8.966 3 Median 0.81715 0.82003 NaN 1 1 Median 0.88319 0.7862 NaN 1 1 Median 0.87362 0.93376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57125000 30431000 26693000 26816000 14786000 12029000 17848000 9273800 8573900 12461000 6371300 6090000 0 0 0 0 0 0 0 0 0 22979 1220 23967 121167;121168;121169 122312;122313;122314 122312 3 LSVQSNPSPQLR EEEVKASQLSVQQNKLSVQSNPSPQLRSVM QNKLSVQSNPSPQLRSVMKVESSENVPSPT K L S L R S 0 1 1 0 0 2 0 0 0 0 2 0 0 0 2 3 0 0 0 1 0 0 12 0 1324.7099 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 125 136 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.0041501 66.056 By MS/MS 1 0.9824 0.83559 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9824 0.83559 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051400 1404300 1647100 0 0 0 0 0 0 0 0 0 3051400 1404300 1647100 0 0 0 0 0 0 22980 1650 23968 121170 122315 122315 1 LSVSGRDENSVELTMAEGPYK YRVPDVLVADPPIARLSVSGRDENSVELTM DENSVELTMAEGPYKIILTARPFRLDLLED R L S Y K I 1 1 1 1 0 0 3 2 0 0 2 1 1 0 1 3 1 0 1 2 0 0 21 1 2281.0896 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 128 148 GANAB Neutral alpha-glucosidase AB no no 3 4.3965E-14 89.028 By MS/MS 1 0.79585 0.83005 NaN 1 Median 0.79585 0.83005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22361000 11052000 11308000 22361000 11052000 11308000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22981 2896;951 23969 121171 122316;122317;122318 122317 3 LSVTVDPK ELQAEQEDRALRSFKLSVTVDPKYHPKIIG RALRSFKLSVTVDPKYHPKIIGRKGAVITQ K L S P K Y 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 8 0 857.48583 Q00341;A0A024R4E5;H0Y394 Q00341 1055 1062 HDLBP Vigilin yes no 2 0.023904 43.808 By MS/MS By MS/MS 1 1 1.0648 0.93295 1.2077 2 Median NaN NaN NaN 0 0 Median 1.1156 0.94095 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0162 0.92502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20724000 9783100 10941000 0 0 0 19498000 9242300 10256000 0 0 0 1226100 540750 685310 0 0 0 0 0 0 22982 4 23970 121172;121173 122319;122320;122321 122320 3 LSVVEYDPGTHDLK GAKRDALLLSFKDAKLSVVEYDPGTHDLKT KLSVVEYDPGTHDLKTLSLHYFEEPELRDG K L S L K T 0 0 0 2 0 0 1 1 1 0 2 1 0 0 1 1 1 0 1 2 0 0 14 0 1571.7831 Q10570;E9PIM1 Q10570 103 116 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2;3 4.0449E-07 107.03 By matching By MS/MS By MS/MS 1 7 4 0.75487 0.79322 25.779 12 Median NaN NaN NaN 0 0 Median 0.50069 0.43802 NaN 1 0 Median 0.72799 0.79254 21.677 7 2 Median 0.95469 0.87966 17.729 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110740000 62813000 47931000 0 0 0 2160200 1376300 783970 101800000 58266000 43533000 6783300 3169800 3613400 0 0 0 0 0 0 22983 2753 23971 121174;121175;121176;121177;121178;121179;121180;121181;121182;121183;121184;121185 122322;122323;122324;122325;122326;122327;122328;122329;122330;122331;122332;122333 122324 12 LSVYAALQR RSSIAGLLLKATNEKLSVYAALQRQLLSPG KATNEKLSVYAALQRQLLSPGTALILLEAQ K L S Q R Q 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1019.5764 Q15149;H0YDN1 Q15149 2847 2855 PLEC Plectin yes no 2 4.8655E-16 186.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.9498 1.5853 80.213 4 Median 1.2947 1.2532 NaN 1 0 Median 2.5068 2.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.6398 6.7898 NaN 1 1 Median 1.5165 1.2302 NaN 1 0 Median 83661000 26650000 57011000 41495000 17808000 23686000 23982000 7142600 16839000 0 0 0 0 0 0 17640000 1478000 16162000 544830 221080 323750 22984 2933 23972 121186;121187;121188;121189;121190 122334;122335;122336;122337;122338 122335 5 LSVYQAMK TSCIAGVFVDATKERLSVYQAMKKGIIRPG VDATKERLSVYQAMKKGIIRPGTAFELLEA R L S M K K 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 8 0 938.48954 Q15149;H0YDN1 Q15149 4084 4091 PLEC Plectin yes no 2 0.0039759 84.244 By matching By MS/MS 1 1 1.3738 1.3868 5.2928 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2464 1.3358 NaN 1 0 Median 1.5142 1.4397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8996000 3788500 5207500 0 0 0 0 0 0 7715100 3251400 4463700 1280900 537110 743790 0 0 0 0 0 0 22985 2933 23973 121191;121192 122339 122339 1 LSWSQLGGSPAEPIPGR EVTLICSARGHPDPKLSWSQLGGSPAEPIP WSQLGGSPAEPIPGRQGWVSSSLTLKVTSA K L S G R Q 1 1 0 0 0 1 1 3 0 1 2 0 0 0 3 3 0 1 0 0 0 0 17 0 1750.9002 P50895;A0A087WXM8 P50895 483 499 BCAM Basal cell adhesion molecule yes no 2 0.00075491 55.452 By MS/MS 1 0.56066 0.54607 NaN 1 Median 0.56066 0.54607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3098400 1949500 1148900 3098400 1949500 1148900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22986 68 23974 121193 122340 122340 1 LSYLEEAVMHLDHSDPITR IQQLASDLGTRTDLKLSYLEEAVMHLDHSD EEAVMHLDHSDPITRDHMGSVMAQVRQKLF K L S T R D 1 1 0 2 0 0 2 0 2 1 3 0 1 0 1 2 1 0 1 1 0 0 19 0 2225.0787 Q6P2E9;I3L3M2;I3L0V0 Q6P2E9 1337 1355 EDC4 Enhancer of mRNA-decapping protein 4 yes no 3 0.008786 22.435 By MS/MS By MS/MS 1 1 0.57306 0.60039 14.222 2 Median 0.66141 0.66391 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.49651 0.54295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3979000 2323400 1655500 1796400 1053500 742940 0 0 0 2182500 1270000 912570 0 0 0 0 0 0 0 0 0 22987 3155 23975 121194;121195 122341;122342;122343 122342 3 LSYNTASNK ______________________________ LTYRRRLSYNTASNKTRLSRTPGNRIVYLY R L S N K T 1 0 2 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 9 0 996.48762 P49207 P49207 11 19 RPL34 60S ribosomal protein L34 yes yes 2 0.00088636 92.439 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.2083 1.0678 8.8321 5 Median 1.1336 1.0678 NaN 1 0 Median 1.1313 0.97216 NaN 1 0 Median 1.2083 1.2202 NaN 1 0 Median 1.3878 1.1651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3314 1.0638 NaN 1 0 Median 5583500 2476000 3107500 1218300 542630 675640 3318900 1482900 1836000 568900 269680 299220 151560 54793 96762 0 0 0 325890 125980 199910 22988 2373 23976 121196;121197;121198;121199;121200 122344;122345 122345 2 LSYTQLLR PSEVRSYVDPSTDERLSYTQLLRRCRRDDG DPSTDERLSYTQLLRRCRRDDGTGQLLLPL R L S L R R 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 0 8 0 992.56548 Q15149;H0YDN1 Q15149 3992 3999 PLEC Plectin yes no 2 0.00093958 149.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 3 1 1.3882 1.2934 14.409 11 Median 1.2289 1.1945 NaN 1 0 Median 1.4127 1.1495 10.892 3 2 Median 1.2316 1.2983 NaN 1 0 Median 1.4239 1.2376 6.2409 2 0 Median 1.3882 1.4569 15.713 3 0 Median 1.3353 1.1109 NaN 1 0 Median 65577000 29141000 36436000 23272000 10421000 12850000 20444000 8976200 11467000 12443000 5850700 6592000 911500 352420 559080 6131500 2552500 3579000 2375900 987700 1388200 22989 2933 23977 121201;121202;121203;121204;121205;121206;121207;121208;121209;121210;121211 122346;122347;122348;122349;122350;122351;122352;122353;122354;122355 122346 10 LSYVGNNFGTGALK PRKRNQRILAAETDRLSYVGNNFGTGALKC RLSYVGNNFGTGALKCNTLCRHFVGILNKT R L S L K C 1 0 2 0 0 0 0 3 0 0 2 1 0 1 0 1 1 0 1 1 0 0 14 0 1439.7409 Q9GZS1;E7EX70 Q9GZS1 67 80 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes no 2 1.2687E-07 112.13 By MS/MS By matching 1 1 1.129 1.0443 22.672 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92706 0.8896 NaN 1 0 Median 1.3749 1.2259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30396000 14652000 15744000 0 0 0 0 0 0 28241000 13710000 14531000 2155300 941980 1213300 0 0 0 0 0 0 22990 3913 23978 121212;121213 122356 122356 1 LSYYGLR YETVQDILKEFFDLRLSYYGLRKEWLVGML LKEFFDLRLSYYGLRKEWLVGMLGAESTKL R L S L R K 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 2 0 0 0 7 0 870.45995 Q02880;E9PCY5;H7BZ82 Q02880 1048 1054 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.050767 52.683 By MS/MS 1 0.5505 0.60063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5505 0.60063 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11362000 7086100 4276300 0 0 0 0 0 0 11362000 7086100 4276300 0 0 0 0 0 0 0 0 0 22991 2704 23979 121214 122357 122357 1 LTAALILK DFTDEKEGPITKHIRLTAALILKNIGKYSE PITKHIRLTAALILKNIGKYSECGRRLLKR R L T L K N 2 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 8 0 841.56369 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1770 1777 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.0035134 91.626 By MS/MS By matching 1 2 1.2879 1.1307 13.237 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81767 0.91116 NaN 1 0 Median 1.288 1.1448 1.7567 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4369200 2283100 2086100 0 0 0 0 0 0 4095300 2155300 1940000 273890 127800 146100 0 0 0 0 0 0 22992 3122 23980 121215;121216;121217 122358;122359 122359 2 LTAALLESTANVK HWEAELATLKGNNAKLTAALLESTANVKQW AKLTAALLESTANVKQWKQQLAAYQEEAER K L T V K Q 3 0 1 0 0 0 1 0 0 0 3 1 0 0 0 1 2 0 0 1 0 0 13 0 1329.7504 Q86YM7;Q86YM6 Q86YM7 197 209 HOMER1 Homer protein homolog 1 yes no 2 8.6931E-05 150.1 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.4452 1.221 26.482 5 Median 1.479 1.4002 NaN 1 0 Median 1.8823 1.675 NaN 1 0 Median 1.1815 1.221 NaN 1 0 Median 1.4452 1.2158 NaN 1 0 Median 0.82466 0.8162 NaN 1 0 Median NaN NaN NaN 0 0 Median 18588000 8204400 10383000 2327000 1170500 1156500 407430 161040 246390 12731000 5364600 7366500 849600 321040 528560 2272700 1187200 1085500 0 0 0 22993 3307 23981 121218;121219;121220;121221;121222 122360 122360 1 LTAALVLR KDLVSKMLHVDPHQRLTAALVLRHPWIVHW HVDPHQRLTAALVLRHPWIVHWDQLPQYQL R L T L R H 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 8 0 855.55419 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 639 646 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0027948 128.86 By MS/MS By matching 3 1 1.147 1.0621 8.0034 4 Median 1.1072 1.1112 7.8632 3 1 Median 1.1883 1.0018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14584000 6662400 7922000 13757000 6298100 7459000 827320 364330 462990 0 0 0 0 0 0 0 0 0 0 0 0 22994 581 23982 121223;121224;121225;121226 122361;122362;122363;122364 122362 4 LTADELWK HLMSQQYRPYSFFTKLTADELWKGALAETG PYSFFTKLTADELWKGALAETGAGAKKGRG K L T W K G 1 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 8 0 974.5073 P82675 P82675 93 100 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 0.010382 58.981 By MS/MS By matching 1 1 0.88616 0.79267 58.818 2 Median 0.55953 0.52296 NaN 1 0 Median 1.4035 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3994500 2305500 1689000 3817100 2234500 1582600 177400 71021 106380 0 0 0 0 0 0 0 0 0 0 0 0 22995 2653 23983 121227;121228 122365 122365 1 LTADFREDPDPR VFAEVPQAQPVLVFKLTADFREDPDPRKVN VFKLTADFREDPDPRKVNLGVGAYRTDDCH K L T P R K 1 2 0 3 0 0 1 0 0 0 1 0 0 1 2 0 1 0 0 0 0 0 12 1 1430.679 P17174 P17174 21 32 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 3 0.0085597 29.807 By MS/MS By MS/MS By matching 1 1 1 0.81179 0.80799 6.9119 3 Plateau 0.81179 0.85414 NaN 1 0 Median 0.81845 0.76433 NaN 1 0 Median 0.73413 0.75243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16499000 8728200 7770400 7469500 4375900 3093600 5616100 2567000 3049100 3413000 1785400 1627600 0 0 0 0 0 0 0 0 0 22996 2038 23984 121229;121230;121231 122366;122367 122367 2 LTADLSAETLQAR AREKGRVTLKGKPIRLTADLSAETLQARRE IRLTADLSAETLQARREWGPIFNILKEKNF R L T A R R 3 1 0 1 0 1 1 0 0 0 3 0 0 0 0 1 2 0 0 0 0 0 13 0 1387.7307 Q9UN81 Q9UN81 249 261 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 2.082E-15 187.97 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 2 1.2944 1.2735 100.46 7 Median 0.90482 0.90352 NaN 1 0 Median 1.2944 1.1028 NaN 1 0 Median 0.82892 0.90631 NaN 1 0 Median 1.5443 1.3594 NaN 1 0 Median 1.2576 1.2735 NaN 1 1 Median 6.6047 5.2832 153.9 2 0 Median 64293000 27828000 36466000 17094000 9005500 8088900 1578300 637520 940740 20992000 11977000 9015100 1747700 741280 1006400 11194000 4706900 6486800 11687000 759690 10928000 22997 4340 23985 121232;121233;121234;121235;121236;121237;121238 122368;122369;122370;122371;122372;122373 122368 6 LTADPDSEIATTSLR GIRNPDHSRALIKEKLTADPDSEIATTSLR LTADPDSEIATTSLRVSLMCPLGKMRLTIP K L T L R V 2 1 0 2 0 0 1 0 0 1 2 0 0 0 1 2 3 0 0 0 0 0 15 0 1588.7944 O75925;B4DGW0;A0A087WUY7;O75928 A0A087WUY7 356 370 PIAS1;PIAS2 E3 SUMO-protein ligase PIAS1;E3 SUMO-protein ligase PIAS2 no no 2 3.4219E-09 127.56 By MS/MS 1 0.77558 0.78896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77558 0.78896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12547000 5704300 6842400 0 0 0 0 0 0 12547000 5704300 6842400 0 0 0 0 0 0 0 0 0 22998 1706;37 23986 121239 122374;122375 122375 2 LTADPGGSSETSSQVLENHTKPK LKSATAKGKKPSKERLTADPGGSSETSSQV SETSSQVLENHTKPKTSKGTKQEETFAKGT R L T P K T 1 0 1 1 0 1 2 2 1 0 2 2 0 0 2 4 3 0 0 1 0 0 23 1 2382.1663 Q01831 Q01831 339 361 XPC DNA repair protein complementing XP-C cells yes yes 3;4 1.7074E-07 39.507 By MS/MS By matching By matching 3 1 1 0.69034 0.78908 25.947 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69034 0.78908 27.216 3 0 Median 1.1785 1.1226 NaN 1 0 Median 0.6167 0.69096 NaN 1 0 Median NaN NaN NaN 0 0 Median 31624000 18175000 13449000 0 0 0 0 0 0 24642000 14627000 10015000 1847800 739120 1108700 5134200 2808700 2325600 0 0 0 22999 2693 23987 121240;121241;121242;121243;121244 122376;122377;122378;122379;122380 122377 5 LTAEAEELKPFFMK NGRIDIKQLIAKKIKLTAEAEELKPFFMKE KLTAEAEELKPFFMKEVGSHFDDFVTNLIE K L T M K E 2 0 0 0 0 0 3 0 0 0 2 2 1 2 1 0 1 0 0 0 0 0 14 1 1652.8484 P35610;B1APM4 P35610 54 67 SOAT1 Sterol O-acyltransferase 1 yes no 3 0.0020128 36.77 By MS/MS By matching 1 1 0.9637 0.99465 17.865 2 Median 0.80441 0.87661 NaN 1 0 Median 1.1545 1.1286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9046400 4420200 4626200 8331100 4094800 4236200 715290 325330 389960 0 0 0 0 0 0 0 0 0 0 0 0 23000 2247 23988 121245;121246 122381;122382 122382 2 LTAEDLFEAR IRQQGLASYDYVRRRLTAEDLFEARIISLE YVRRRLTAEDLFEARIISLETYNLLREGTR R L T A R I 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1163.5823 Q15149;H0YDN1 Q15149 3784 3793 PLEC Plectin yes no 2 2.0222E-07 135.79 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 2 2 1 1.145 1.0983 49.395 8 Median 1.1671 1.1343 NaN 1 1 Median 1.2605 1.0635 NaN 1 0 Median 1.1185 1.1784 NaN 1 0 Median 0.72853 0.64007 59.528 2 0 Median 1.7492 1.8415 36.792 2 0 Median 0.96743 0.79416 NaN 1 0 Median 50203000 22090000 28112000 23555000 10543000 13012000 4680000 2033900 2646000 13495000 5945800 7549200 612480 331960 280520 7548200 3086800 4461400 311680 148610 163070 23001 2933 23989 121247;121248;121249;121250;121251;121252;121253;121254;121255 122383;122384;122385;122386;122387;122388;122389 122383 7 LTAEEMDER GVARPHYGSVLDNERLTAEEMDERRRQNVA VLDNERLTAEEMDERRRQNVAYEYLCHLEE R L T E R R 1 1 0 1 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1092.4757 P46940;A0A0J9YXZ5;H0YLE8;A0A087X225 P46940 26 34 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00045787 124.98 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.0839 0.99512 23.145 8 Median 1.1209 1.0518 37.149 3 0 Median 1.1037 0.94148 4.254 3 0 Plateau 1.0646 1.1786 NaN 1 0 Median 1.3133 1.1546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51403000 23674000 27729000 32885000 15311000 17575000 13530000 6357100 7172700 3681500 1494600 2186900 1306300 511740 794550 0 0 0 0 0 0 23002 2350 23990 121256;121257;121258;121259;121260;121261;121262;121263 122390;122391;122392;122393;122394;122395;122396;122397;122398;122399;122400 122399 11 LTAEEMDERR GVARPHYGSVLDNERLTAEEMDERRRQNVA LDNERLTAEEMDERRRQNVAYEYLCHLEEA R L T R R R 1 2 0 1 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 10 1 1248.5768 P46940;A0A0J9YXZ5;H0YLE8;A0A087X225 P46940 26 35 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.015931 25.938 By MS/MS By MS/MS 1 1 1.082 1.1244 9.2279 2 Median 1.1223 1.2002 NaN 1 0 Median 1.0431 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2271700 1099000 1172700 1716200 805970 910270 555480 293010 262480 0 0 0 0 0 0 0 0 0 0 0 0 23003 2350 23991 121264;121265 122401;122402;122403 122402 3 LTAELIEQAAQYTNAVR ______________________________ AELIEQAAQYTNAVRDRELDLRGYKIPVIE K L T V R D 4 1 1 0 0 2 2 0 0 1 2 0 0 0 0 0 2 0 1 1 0 0 17 0 1889.9847 P09661;H0YKK0 P09661 4 20 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 2.8091E-12 149.38 By MS/MS By matching By matching By matching By MS/MS By matching 2 2 2 2 3 2 1.0544 1.0268 50.526 13 Median 1.2338 1.1665 10.109 2 0 Median 0.30725 0.28687 4.9592 2 0 Median 1.1796 1.1018 15.872 2 0 Median 1.3172 1.0773 3.5299 2 0 Median 1.0311 1.0358 33.961 3 0 Plateau 1.0916 0.87831 5.2661 2 0 Median 46158000 21932000 24226000 13138000 5775300 7362800 2860900 1795100 1065800 1736700 822560 914100 727670 348850 378820 15449000 7430900 8017700 12246000 5759300 6486900 23004 1920 23992 121266;121267;121268;121269;121270;121271;121272;121273;121274;121275;121276;121277;121278 122404;122405;122406;122407 122405 4 LTAFVNTLNGK VDIINFGEEEVNTEKLTAFVNTLNGKDGTG NTEKLTAFVNTLNGKDGTGSHLVTVPPGPS K L T G K D 1 0 2 0 0 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 11 0 1176.6503 P55036;Q5VWC4;A6PVX3;A2A3N6 P55036 153 163 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 2 0.00011205 123.86 By MS/MS By MS/MS 1 1 1.297 1.1839 16.869 2 Median 1.1286 1.0508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4904 1.3339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14019000 6171100 7848300 9827800 4686800 5141100 0 0 0 0 0 0 4191500 1484300 2707200 0 0 0 0 0 0 23005 2491 23993 121279;121280 122408;122409;122410 122410 3 LTAIDILTTCAADIQR KKPVIVFVPSRKQTRLTAIDILTTCAADIQ TAIDILTTCAADIQRQRFLHCTEKDLIPYL R L T Q R Q 3 1 0 2 1 1 0 0 0 3 2 0 0 0 0 0 3 0 0 0 0 0 16 0 1773.9295 O75643 O75643 1571 1586 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0060531 32.062 By MS/MS 1 1.1207 0.93913 NaN 1 Median NaN NaN NaN 0 0 Median 1.1207 0.93913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1711100 894430 816720 0 0 0 1711100 894430 816720 0 0 0 0 0 0 0 0 0 0 0 0 23006 1688 23994 121281 122411 122411 1 LTAIIEEAEEAPGAR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR LTAIIEEAEEAPGARPQLQDAWRGPREPGP R L T A R P 4 1 0 0 0 0 4 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 15 0 1568.8046 P58107;A0A075B730 P58107 2571 2585 EPPK1 Epiplakin yes no 2 0.010453 45.359 By MS/MS 1 1.0393 0.8805 NaN 1 Median NaN NaN NaN 0 0 Median 1.0393 0.8805 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4060200 2380900 1679300 0 0 0 4060200 2380900 1679300 0 0 0 0 0 0 0 0 0 0 0 0 23007 2520 23995 121282 122412 122412 1 LTAIIEEAEEAPGARPQLQDAWR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR EEAPGARPQLQDAWRGPREPGPAGRGDGDS R L T W R G 5 2 0 1 0 2 4 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 23 1 2563.3031 P58107;A0A075B730 P58107 2571 2593 EPPK1 Epiplakin yes no 3 1.3589E-16 72.876 By matching By MS/MS By matching 1 2 1 0.91319 0.90363 54.563 4 Median 0.91839 0.99802 NaN 1 0 Median 0.50315 0.51884 69.985 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0614 0.95946 NaN 1 0 Median 45428000 24674000 20754000 34706000 18401000 16305000 10315000 6047100 4268400 0 0 0 0 0 0 0 0 0 406820 225630 181180 23008 2520 23996 121283;121284;121285;121286 122413 122413 1 LTALAEDRPLFDGPSRPSVAR DSPASRFAGLDTNQRLTALAEDRPLFDGPS DRPLFDGPSRPSVARDGPTKMIFEGPNKLS R L T A R D 3 3 0 2 0 0 1 1 0 0 3 0 0 1 3 2 1 0 0 1 0 0 21 2 2267.2022 O94913;E9PKN0;E9PQ01 O94913 742 762 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 3;4 3.1698E-05 38.159 By MS/MS 3 0.55404 0.62581 79.323 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55404 0.62581 79.323 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31642000 18818000 12825000 0 0 0 0 0 0 31642000 18818000 12825000 0 0 0 0 0 0 0 0 0 23009 1736 23997 121287;121288;121289 122414;122415 122415 2 LTALLLPPDPIVINHVISVDPSDQK IFDCPRLKFSEIPQRLTALLLPPDPIVINH IVINHVISVDPSDQKKTACYDIDVEVEEPL R L T Q K K 1 0 1 3 0 1 0 0 1 3 4 1 0 0 4 2 1 0 0 3 0 0 25 0 2693.5004 Q6STE5 Q6STE5 329 353 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 3 0.043987 9.7164 By MS/MS 1 0.35976 0.37067 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35976 0.37067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2043000 1329600 713410 0 0 0 0 0 0 2043000 1329600 713410 0 0 0 0 0 0 0 0 0 23010 3183 23998 121290 122416 122416 1 LTAPEDVFSK EPDTLEAAKKTMWERLTAPEDVFSKLQREN TMWERLTAPEDVFSKLQRENIAIIESYGAA R L T S K L 1 0 0 1 0 0 1 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 10 0 1105.5655 Q92621;U3KPX2 Q92621 1452 1461 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.00037664 90.906 By MS/MS By MS/MS By matching 1 3 1 1.2468 1.134 7.1933 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91461 1.0031 NaN 1 0 Median 1.2468 1.134 3.6321 2 0 Median NaN NaN NaN 0 0 Median 1.3687 1.1729 NaN 1 0 Median 78444000 39100000 39344000 0 0 0 0 0 0 72130000 37282000 34848000 4496700 1299000 3197700 0 0 0 1817600 518790 1298800 23011 3547 23999 121291;121292;121293;121294;121295 122417;122418;122419;122420 122417 4 LTAQFVAR ADPPSISAFDLDVVKLTAQFVARNGRQFLT FDLDVVKLTAQFVARNGRQFLTQLMQKEQR K L T A R N 2 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 904.51305 Q15459 Q15459 169 176 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.00086671 148.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 3 3 5 1.2158 1.1569 15.197 17 Median 1.3637 1.3345 8.2528 2 0 Median 1.4043 1.1569 16.996 3 0 Median 1.1382 1.2043 NaN 1 0 Median 1.3399 1.1507 1.4432 3 2 Median 1.1723 1.1691 7.7378 3 0 Median 1.1628 0.93405 16.773 5 1 Median 245820000 107840000 137980000 12095000 4583200 7512000 56080000 23350000 32731000 24882000 11172000 13710000 29517000 12133000 17383000 71747000 32653000 39095000 51499000 23945000 27553000 23012 2954 24000 121296;121297;121298;121299;121300;121301;121302;121303;121304;121305;121306;121307;121308;121309;121310;121311;121312 122421;122422;122423;122424;122425;122426;122427;122428;122429;122430;122431;122432;122433;122434;122435;122436;122437;122438;122439;122440;122441;122442;122443;122444;122445;122446 122439 26 LTAQVEELSK KVLEERQRFQEERQKLTAQVEELSKKLADS EERQKLTAQVEELSKKLADSDQASKVQQQK K L T S K K 1 0 0 0 0 1 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1116.6027 A0A087WY61;K4DIE0 A0A087WY61 1531 1540 NUMA1 no no 2 0.00036109 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0428 0.98762 5.9606 5 Median NaN NaN NaN 0 0 Median 1.2091 1.0713 NaN 1 0 Median 0.8375 0.92022 NaN 1 0 Median 1.0428 0.93664 NaN 1 0 Median 0.94925 0.99455 NaN 1 0 Median 1.1531 0.98762 NaN 1 0 Median 97294000 48474000 48820000 0 0 0 11457000 4909000 6547700 42344000 22590000 19754000 10395000 5121700 5273200 24057000 11392000 12666000 9041900 4462000 4579900 23013 77 24001 121313;121314;121315;121316;121317 122447;122448;122449;122450;122451;122452;122453;122454;122455;122456 122451 10 LTAQVEELSKK KVLEERQRFQEERQKLTAQVEELSKKLADS ERQKLTAQVEELSKKLADSDQASKVQQQKL K L T K K L 1 0 0 0 0 1 2 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 11 1 1244.6976 A0A087WY61;K4DIE0 A0A087WY61 1531 1541 NUMA1 no no 2;3 0.00026897 85.377 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 0.91982 1.0305 24.336 8 Median NaN NaN NaN 0 0 Median 1.344 1.314 NaN 1 0 Median 0.91982 1.0623 2.2094 2 0 Median 1.8508 1.7298 NaN 1 0 Median 0.85836 0.91269 5.8146 2 0 Median 1.0101 0.90141 16.834 2 1 Median 29294000 14610000 14684000 0 0 0 694930 279600 415330 13381000 6504500 6876900 1144400 397600 746820 6665200 3441700 3223500 7408000 3986400 3421600 23014 77 24002 121318;121319;121320;121321;121322;121323;121324;121325 122457;122458;122459;122460;122461;122462;122463;122464;122465;122466 122457 9 LTAQVEQLEVFQR KVLEERQRFQEERQKLTAQVEQLEVFQREQ QKLTAQVEQLEVFQREQTKQVEELSKKLAD K L T Q R E 1 1 0 0 0 3 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 0 1559.8308 Q14980 Q14980 1533 1545 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 2.2501E-06 158.79 By MS/MS By MS/MS 2 1 0.97955 1.069 36.403 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74114 0.79531 41.82 2 0 Median NaN NaN NaN 0 0 Median 1.0973 1.1488 NaN 1 1 Median NaN NaN NaN 0 0 Median 17125000 10280000 6845200 0 0 0 0 0 0 12538000 7961000 4577000 0 0 0 4587200 2319100 2268100 0 0 0 23015 2905 24003 121326;121327;121328 122467;122468;122469 122468 3 LTASEQAHPQEPAESAHEPR VDTEEDGKAEVASEKLTASEQAHPQEPAES QAHPQEPAESAHEPRLSAEYEKVELPSEEQ K L T P R L 4 1 0 0 0 2 4 0 2 0 1 0 0 0 3 2 1 0 0 0 0 0 20 0 2184.0196 Q02952 Q02952 350 369 AKAP12 A-kinase anchor protein 12 yes yes 3;4 7.754E-09 67.995 By MS/MS By MS/MS 5 5 0.65395 0.59746 14.941 10 Median 0.59943 0.60537 16.711 5 0 Median 0.72505 0.58966 14.5 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31341000 17891000 13449000 12330000 6978400 5351200 19011000 10913000 8098200 0 0 0 0 0 0 0 0 0 0 0 0 23016 2705 24004 121329;121330;121331;121332;121333;121334;121335;121336;121337;121338 122470;122471;122472;122473;122474;122475;122476;122477;122478;122479;122480;122481 122478 12 LTATPTPLGGMTGFHMQTEDR PPPAGYVPIRTPARKLTATPTPLGGMTGFH PLGGMTGFHMQTEDRTMKSVNDQPSGNLPF K L T D R T 1 1 0 1 0 1 1 3 1 0 2 0 2 1 2 0 5 0 0 0 0 0 21 0 2260.0616 O75533 O75533 431 451 SF3B1 Splicing factor 3B subunit 1 yes yes 3 2.0635E-23 118.37 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 2 0.81576 0.79852 6.4586 6 Median 0.8324 0.81256 NaN 1 0 Median 1.0048 0.88728 NaN 1 0 Median 0.71381 0.78472 NaN 1 0 Median 0.87485 0.74572 NaN 1 0 Median 0.76616 0.7861 6.3035 2 0 Median NaN NaN NaN 0 0 Median 47399000 26998000 20401000 2889100 1531400 1357700 874420 425320 449100 18892000 11117000 7775100 1199800 406580 793270 23544000 13518000 10026000 0 0 0 23017 1683 24005 121339;121340;121341;121342;121343;121344 122482;122483;122484;122485;122486;122487;122488 122483 7 LTATTQKQEQIINTMTQDLR GYRREITSLHERNQKLTATTQKQEQIINTM QKQEQIINTMTQDLRGANEKLAVAEVRAEN K L T L R G 1 1 1 1 0 4 1 0 0 2 2 1 1 0 0 0 5 0 0 0 0 0 20 1 2332.2057 P12270 P12270 749 768 TPR Nucleoprotein TPR yes yes 3 4.5951E-19 126.4 By MS/MS By MS/MS 1 3 0.98187 1.1567 36.999 4 Median 0.59909 0.62448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0631 1.2738 16.16 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54943000 25571000 29373000 15561000 10151000 5409900 0 0 0 39383000 15420000 23963000 0 0 0 0 0 0 0 0 0 23018 1978 24006;24007 121345;121346;121347;121348 122489;122490;122491;122492;122493 122489 757 5 LTAVEGSMK LEPMAGQLSNSVATKLTAVEGSMKENISKL NSVATKLTAVEGSMKENISKLLKSKNLTDA K L T M K E 1 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 1 0 0 9 0 934.47937 Q6P2E9 Q6P2E9 1074 1082 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.065815 41.876 By MS/MS 1 0.98917 0.86946 NaN 1 Median NaN NaN NaN 0 0 Median 0.98917 0.86946 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2145300 1062400 1082900 0 0 0 2145300 1062400 1082900 0 0 0 0 0 0 0 0 0 0 0 0 23019 3155 24008 121349 122494 122494 1 LTAVEGSMKENISK LEPMAGQLSNSVATKLTAVEGSMKENISKL KLTAVEGSMKENISKLLKSKNLTDAIARAA K L T S K L 1 0 1 0 0 0 2 1 0 1 1 2 1 0 0 2 1 0 0 1 0 0 14 1 1505.7759 Q6P2E9 Q6P2E9 1074 1087 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2;3 0.00023839 62.081 By MS/MS By MS/MS 2 2 1.0626 1.0986 16.153 4 Median 1.0791 1.0601 15.973 2 0 Median NaN NaN NaN 0 0 Median 1.0228 1.1755 20.515 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23567000 11355000 12211000 11363000 4979700 6383100 0 0 0 12204000 6375600 5828400 0 0 0 0 0 0 0 0 0 23020 3155 24009 121350;121351;121352;121353 122495;122496;122497;122498;122499 122499 5 LTAWYGELPYTYSR QRTGIREDITYQQPRLTAWYGELPYTYSRI RLTAWYGELPYTYSRITMEPNPHWHPVLRT R L T S R I 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 1 2 1 3 0 0 0 14 0 1718.8304 E9PSA5;Q96Q83 E9PSA5 131 144 ALKBH3 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 yes no 2 0.0028695 40.589 By MS/MS By matching 1 1 1.8336 1.6645 16.985 2 Median 1.5464 1.4761 NaN 1 0 Median 2.1741 1.8769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4097300 1528400 2568800 3789000 1439000 2350100 308240 89478 218760 0 0 0 0 0 0 0 0 0 0 0 0 23021 988 24010 121354;121355 122500 122500 1 LTAYAMTIPFVR DKKISPKRDKGLVEKLTAYAMTIPFVRQQV VEKLTAYAMTIPFVRQQVYKKVEEKVRKQT K L T V R Q 2 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 2 0 1 1 0 0 12 0 1381.7428 H0YFD6;P40939;A0A2R8YG21;A0A2R8Y688 H0YFD6 268 279 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00016877 86.624 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1255 0.97526 19.558 5 Median 0.95499 0.90315 NaN 1 0 Median 1.1255 0.97526 NaN 1 0 Median 0.9266 0.94042 NaN 1 0 Median 1.452 1.2051 NaN 1 0 Median 1.3412 1.432 NaN 1 0 Median NaN NaN NaN 0 0 Median 44817000 22856000 21961000 24192000 12609000 11583000 3560000 1747700 1812300 15700000 8001600 7698800 170600 59788 110810 1194200 437660 756490 0 0 0 23022 1180 24011;24012 121356;121357;121358;121359;121360;121361 122501;122502;122503;122504;122505;122506;122507;122508 122502 394 8 LTDADAMK AIGQKRSTVAQLVKRLTDADAMKYTIVVSA VAQLVKRLTDADAMKYTIVVSATASDAAPL R L T M K Y 2 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 8 0 863.40587 P25705;K7ENJ4 P25705 263 270 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.008272 63.565 By MS/MS By MS/MS By matching 1 1 1 1.0924 1.0882 15.103 3 Median 0.89137 0.84156 NaN 1 0 Median 1.2944 1.0979 NaN 1 0 Median 1.0924 1.0882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14034000 5924600 8109100 5024200 2271900 2752300 8810200 3553400 5256800 199380 99271 100100 0 0 0 0 0 0 0 0 0 23023 2135 24013 121362;121363;121364 122509;122510;122511 122510 3 LTDAQILTR IEPIQSRCAVLRYTKLTDAQILTRLMNVIE VLRYTKLTDAQILTRLMNVIEKERVPYTDD K L T T R L 1 1 0 1 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1029.5819 P35250;A0A087WVY3;H7C5P4 P35250 193 201 RFC2 Replication factor C subunit 2 yes no 2 0.018263 65.305 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23024 2238 24014 121365 122512 122512 1 LTDCVVMR TTEESLRNYYEQWGKLTDCVVMRDPASKRS YYEQWGKLTDCVVMRDPASKRSRGFGFVTF K L T M R D 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 2 0 0 8 0 992.47832 P22626;A0A087WUI2 P22626 47 54 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.0048619 81.784 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.186 1.0284 18.165 4 Median NaN NaN NaN 0 0 Median 1.2045 1.0471 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1678 1.0099 NaN 1 1 Median 1.3994 1.4067 NaN 1 0 Median 1.1602 0.92583 NaN 1 0 Median 34173000 15387000 18786000 0 0 0 5152400 2291200 2861200 0 0 0 2745600 1392000 1353600 6511300 2832300 3679000 19763000 8871400 10892000 23025 2103 24015 121366;121367;121368;121369 122513;122514;122515 122515 3 LTDCVVMRDPASK TTEESLRNYYEQWGKLTDCVVMRDPASKRS GKLTDCVVMRDPASKRSRGFGFVTFSSMAE K L T S K R 1 1 0 2 1 0 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 13 1 1490.7221 P22626;A0A087WUI2 P22626 47 59 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 1.8889E-06 109.24 By MS/MS By MS/MS By MS/MS 1 2 1 0.89399 0.97377 8.784 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78803 0.85599 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.89399 0.97377 NaN 1 0 Median 0.9286 0.82333 NaN 1 1 Median 27028000 14672000 12356000 0 0 0 0 0 0 8417900 4310500 4107400 0 0 0 11169000 6208900 4960600 7440500 4152400 3288100 23026 2103 24016 121370;121371;121372;121373 122516;122517;122518;122519;122520 122518 5 LTDCVVMRDPASKR TTEESLRNYYEQWGKLTDCVVMRDPASKRS KLTDCVVMRDPASKRSRGFGFVTFSSMAEV K L T K R S 1 2 0 2 1 0 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 14 2 1646.8232 P22626;A0A087WUI2 P22626 47 60 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3;4 0.00027698 55.841 By matching By matching By matching By MS/MS 1 1 2 6 0.92326 1.0146 20.394 10 Median NaN NaN NaN 0 0 Median 1.2245 1.4366 NaN 1 0 Median 0.83937 0.98572 NaN 1 0 Median 1.2257 1.1082 15.036 2 0 Median 0.8559 0.97783 19.666 6 1 Median NaN NaN NaN 0 0 Median 56143000 29370000 26773000 0 0 0 1173300 628470 544790 959300 306030 653280 998510 464980 533520 53012000 27971000 25042000 0 0 0 23027 2103 24017 121374;121375;121376;121377;121378;121379;121380;121381;121382;121383 122521;122522;122523;122524;122525 122525 5 LTDEDFSPFGSGGGLFSGGK TPSDDEEDNLFAPPKLTDEDFSPFGSGGGL FSPFGSGGGLFSGGKGLFDDEDEESDLFTE K L T G K G 0 0 0 2 0 0 1 6 0 0 2 1 0 3 1 3 1 0 0 0 0 0 20 0 1973.9007 F8W7U3;J3KP36;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1;Q641Q2;A0A087WYF6 F8W7U3 258 277 FAM21A;FAM21C WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 2 4.5979E-05 40.552 By MS/MS By matching By matching 1 1 1 0.93318 1.0673 13.664 3 Plateau 1.1211 1.0673 NaN 1 0 Median 0.93318 0.81812 NaN 1 0 Median 0.8002 0.88465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3342600 1641900 1700800 2644300 1264600 1379700 266710 149700 117010 431590 227580 204020 0 0 0 0 0 0 0 0 0 23028 143 24018 121384;121385;121386 122526;122527 122526 2 LTDEEVEMTR DTVVALLADVVLQPRLTDEEVEMTRMAVQF VLQPRLTDEEVEMTRMAVQFELEDLNLRPD R L T T R M 0 1 0 1 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 10 0 1221.5547 Q10713 Q10713 176 185 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 2.0876E-05 146.69 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.5425 1.3227 24.977 5 Median 1.1983 1.1304 NaN 1 0 Median 1.6688 1.4011 NaN 1 0 Median 1.4228 1.4464 45.478 2 0 Median 1.5425 1.3227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62331000 25276000 37054000 24517000 10862000 13655000 22274000 8093900 14180000 12036000 4969300 7066400 3504000 1351400 2152600 0 0 0 0 0 0 23029 2754 24019 121387;121388;121389;121390;121391 122528;122529;122530;122531;122532;122533;122534;122535;122536 122529 9 LTDEGAVHVNDR HLMKMIHPNLYRIDRLTDEGAVHVNDRIVP IDRLTDEGAVHVNDRIVPQPPLQKLSAEKL R L T D R I 1 1 1 2 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1324.6371 O95487 O95487 1127 1138 SEC24B Protein transport protein Sec24B yes yes 2 0.00036748 80.763 By MS/MS 1 1.2773 1.0948 NaN 1 Median NaN NaN NaN 0 0 Median 1.2773 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2034900 909200 1125700 0 0 0 2034900 909200 1125700 0 0 0 0 0 0 0 0 0 0 0 0 23030 1778 24020 121392 122537;122538 122538 2 LTDEQVALVR YWRTVQDPMTGRDLRLTDEQVALVRRLQSG GRDLRLTDEQVALVRRLQSGQFGDVGFNPY R L T V R R 1 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1142.6295 Q14137;A0A075B729 Q14137 196 205 BOP1 Ribosome biogenesis protein BOP1 yes no 2 1.4044E-05 150.4 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 5 2 1.0772 0.88797 26.469 9 Median 0.91262 0.86072 NaN 1 0 Median 1.4173 1.2039 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8215 0.70572 NaN 1 1 Median 0.97907 0.9912 34.901 4 2 Median 1.1906 0.99115 18.517 2 1 Median 109140000 53259000 55883000 3301100 1525900 1775300 1768800 729650 1039200 0 0 0 953470 560310 393160 86022000 42332000 43690000 17096000 8111200 8984900 23031 2856 24021 121393;121394;121395;121396;121397;121398;121399;121400;121401;121402 122539;122540;122541;122542;122543;122544;122545;122546;122547;122548;122549 122541 11 LTDFGLSK LKPENILLDEEGHIKLTDFGLSKESIDHEK DEEGHIKLTDFGLSKESIDHEKKAYSFCGT K L T S K E 0 0 0 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 879.47018 Q96GX5;V9GXZ1;E7ERL6;Q9Y2H9;O15021;E9PGT3;Q15418;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32 B1AXG1 180 187 MASTL;MAST2;MAST1;MAST4;RPS6KA1;RPS6KA3;RPS6KA6 Serine/threonine-protein kinase greatwall;Microtubule-associated serine/threonine-protein kinase 1;Microtubule-associated serine/threonine-protein kinase 4;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 no no 2 0.012238 55.37 By MS/MS By MS/MS 1 1 1.0291 0.92638 13.124 2 Median 0.91035 0.84428 NaN 1 0 Median 1.1633 1.0165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14835000 7405700 7429800 6291000 3064000 3227000 8544400 4341700 4202800 0 0 0 0 0 0 0 0 0 0 0 0 23032 581;926;3662 24022 121403;121404 122550;122551;122552 122550 3 LTDIFRR IAFDDFIQGCIVLQRLTDIFRRYDTDQDGW QGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ R L T R R Y 0 2 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 7 1 919.52395 O75340;A0A024QZ42;H0Y9X3;A0A087WZ38 O75340 161 167 PDCD6 Programmed cell death protein 6 yes no 2 0.01538 81.381 By MS/MS By matching 1 1 1.1744 1.15 1.8827 2 Median 1.0826 1.1348 NaN 1 0 Median 1.2739 1.1654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8768600 3984600 4784000 7065700 3236700 3829000 1702900 747980 954950 0 0 0 0 0 0 0 0 0 0 0 0 23033 1659 24023 121405;121406 122553;122554 122553 2 LTDIHGNVLQYHK DTCAPEVILHAVGGKLTDIHGNVLQYHKDV GKLTDIHGNVLQYHKDVKHMNSAGVLATLR K L T H K D 0 0 1 1 0 1 0 1 2 1 2 1 0 0 0 0 1 0 1 1 0 0 13 0 1536.8049 O95861;A6NF51 O95861 262 274 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 3 2.2614E-07 101.89 By MS/MS By MS/MS 2 2 1.2101 1.1239 7.9117 4 Median 1.2101 1.1239 2.8091 2 0 Median 1.2425 1.0573 11.938 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36700000 16476000 20223000 20907000 10023000 10884000 15793000 6453200 9339500 0 0 0 0 0 0 0 0 0 0 0 0 23034 1799 24024 121407;121408;121409;121410 122555;122556;122557 122557 3 LTDIQYGR TMENGPKLASRILSKLTDIQYGREESDWTI ASRILSKLTDIQYGREESDWTIVLS_____ K L T G R E 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 8 0 964.49779 P54687 P54687 369 376 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes yes 2 0.03187 67.981 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23035 2484 24025 121411 122558 122558 1 LTDISVTDPEK ICGTLHSVDQYLNIKLTDISVTDPEKYPHM LNIKLTDISVTDPEKYPHMLSVKNCFIRGS K L T E K Y 0 0 0 2 0 0 1 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 11 0 1216.6187 Q9Y333 Q9Y333 40 50 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.00015021 89.047 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.73597 0.71101 29.1 5 Median NaN NaN NaN 0 0 Median 0.80764 0.67957 30.627 2 1 Median 0.73969 0.72929 3.5883 2 0 Median 0.50236 0.40772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27813000 15483000 12330000 0 0 0 10822000 5890700 4931100 14938000 8207900 6730500 2052700 1384100 668590 0 0 0 0 0 0 23036 4405 24026 121412;121413;121414;121415;121416;121417 122559;122560;122561;122562;122563;122564;122565 122565 7 LTDISVTDPEKYPHMLSVK ICGTLHSVDQYLNIKLTDISVTDPEKYPHM SVTDPEKYPHMLSVKNCFIRGSVVRYVQLP K L T V K N 0 0 0 2 0 0 1 0 1 1 2 2 1 0 2 2 2 0 1 2 0 0 19 1 2172.1137 Q9Y333 Q9Y333 40 58 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 3;4 1.1525E-06 52.298 By MS/MS By matching By matching 3 1 2 0.63311 0.90354 38.218 6 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82042 0.82815 16.076 3 0 Plateau 0.68348 0.58829 NaN 1 0 Median 0.38685 0.40284 54.354 2 0 Median NaN NaN NaN 0 0 Median 34991000 19953000 15038000 0 0 0 0 0 0 31060000 17532000 13528000 231560 129250 102310 3699200 2291200 1408100 0 0 0 23037 4405 24027 121418;121419;121420;121421;121422;121423 122566;122567;122568 122566 3 LTDKNLGFQMLQK SKKKKPKDLDFAQQKLTDKNLGFQMLQKMG QKLTDKNLGFQMLQKMGWKEGHGLGSLGKG K L T Q K M 0 0 1 1 0 2 0 1 0 0 3 2 1 1 0 0 1 0 0 0 0 0 13 1 1534.8177 M0R2Z9;Q8IX01 M0R2Z9 1023 1035 SUGP2 SURP and G-patch domain-containing protein 2 yes no 3 0.0014861 39.878 By MS/MS By matching 1 1 1.1227 1.2737 6.2132 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0611 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1879 1.3309 NaN 1 0 Median NaN NaN NaN 0 0 Median 8954700 4442200 4512500 0 0 0 0 0 0 5486400 2797400 2689000 0 0 0 3468300 1644800 1823600 0 0 0 23038 1437 24028 121424;121425 122569 122569 1 LTDLQVIKNETDAR FSSEEDRSSSCLQAKLTDLQVIKNETDARW KLTDLQVIKNETDARWKEFEIISLKLENHV K L T A R W 1 1 1 2 0 1 1 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 14 1 1614.8577 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1156 1169 SYNE2 Nesprin-2 yes no 3 0.00030694 54.09 By MS/MS 1 1.0029 1.1633 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0029 1.1633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13903000 7119900 6782800 0 0 0 0 0 0 13903000 7119900 6782800 0 0 0 0 0 0 0 0 0 23039 3521 24029 121426 122570 122570 1 LTDQLPLIIVCDR CYDPERVKNFLKEAKLTDQLPLIIVCDRFD AKLTDQLPLIIVCDRFDFVHDLVLYLYRNN K L T D R F 0 1 0 2 1 1 0 0 0 2 3 0 0 0 1 0 1 0 0 1 0 0 13 0 1554.844 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 772 784 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.058866 24.382 By MS/MS 2 1.2187 1.0357 12.524 2 Median NaN NaN NaN 0 0 Median 1.2187 1.0357 12.524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6784400 3159100 3625300 0 0 0 6784400 3159100 3625300 0 0 0 0 0 0 0 0 0 0 0 0 23040 44 24030 121427;121428 122571 122571 1 LTDQVMQNPR SDSVEAAKNASNTEKLTDQVMQNPRVLAAL SNTEKLTDQVMQNPRVLAALQERLDNVPHT K L T P R V 0 1 1 1 0 2 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 10 0 1200.5921 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;E9PKT8;E9PKI2;E9PP22;C9J1B1 Q99733 27 36 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 0.00035909 121.96 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.94694 0.9058 20.83 8 Median 0.91893 0.8832 2.8106 2 0 Median 0.94066 0.79386 19.417 2 0 Median 0.9472 0.97282 2.6892 2 0 Median 1.2859 1.0911 39.242 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42125000 20801000 21325000 14183000 7361600 6821100 17876000 8371100 9504400 6414700 3307800 3107000 3652400 1760100 1892300 0 0 0 0 0 0 23041 3766 24031 121429;121430;121431;121432;121433;121434;121435;121436 122572;122573;122574;122575;122576;122577;122578;122579;122580;122581;122582;122583 122577 12 LTDRDIIVLQR KLIRKDMVDPVTGDKLTDRDIIVLQRGGTG TGDKLTDRDIIVLQRGGTGFAGSGVKLQAE K L T Q R G 0 2 0 2 0 1 0 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 11 1 1340.7776 Q9Y314;A0A075B6F9 Q9Y314 268 278 NOSIP Nitric oxide synthase-interacting protein yes no 3 4.6711E-05 88.441 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.94025 0.94242 22.709 4 Median 0.88753 0.95548 NaN 1 0 Median 0.79199 0.72898 NaN 1 0 Median 1.2164 1.2696 NaN 1 0 Median 0.9961 0.92954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18881000 8703100 10178000 2427800 1274600 1153200 2351800 1313200 1038600 11910000 5016200 6893600 2192100 1099200 1092900 0 0 0 0 0 0 23042 4401 24032 121437;121438;121439;121440 122584;122585;122586 122585 3 LTDRWQNAVQGVR TEIENRPEFITEFSKLTDRWQNAVQGVRQR SKLTDRWQNAVQGVRQRKGDVDGLVRQWQD K L T V R Q 1 2 1 1 0 2 0 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 13 1 1541.8063 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3;G3V3D4 Q8WXH0 5677 5689 SYNE2 Nesprin-2 yes no 3 6.91E-07 119.01 By MS/MS By matching By matching 1 1 1 0.85398 0.93853 25.329 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85398 0.93853 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64237 0.6949 NaN 1 0 Median 1.3098 1.1496 NaN 1 0 Median 20706000 10893000 9812800 0 0 0 0 0 0 13016000 6884700 6131100 0 0 0 6902400 3676800 3225600 787400 331280 456120 23043 3521 24033 121441;121442;121443 122587;122588 122587 2 LTDSVLR ______________________________ ______________________________ K L T L R S 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 802.45487 Q6UXN9 Q6UXN9 3 9 WDR82 WD repeat-containing protein 82 yes yes 2 0.016795 83.614 By MS/MS 1 0.95837 0.79938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95837 0.79938 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4977600 2503700 2473900 0 0 0 0 0 0 0 0 0 4977600 2503700 2473900 0 0 0 0 0 0 23044 3190 24034 121444 122589 122589 1 LTDTLVSK KFVAKENEVQSLHSKLTDTLVSKQQLEQRL VQSLHSKLTDTLVSKQQLEQRLMQLMESEQ K L T S K Q 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 2 0 0 1 0 0 8 0 875.4964 Q86UP2 Q86UP2 536 543 KTN1 Kinectin yes yes 2 0.0048 79.474 By MS/MS By MS/MS By MS/MS 1 2 2 1.2494 1.0817 25.723 5 Median NaN NaN NaN 0 0 Median 1.3812 1.1729 NaN 1 0 Median 0.91098 1.0228 50.165 2 0 Median 1.2225 1.065 2.1959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11607000 5129000 6477900 0 0 0 6197100 2629200 3567900 2037800 998890 1038900 3371900 1500900 1871100 0 0 0 0 0 0 23045 3280 24035 121445;121446;121447;121448;121449 122590;122591;122592;122593;122594 122591 5 LTDTSKDEENHEESESLQEDMLGNR LLNKVVLRESCFYRKLTDTSKDEENHEESE HEESESLQEDMLGNRLLLPTPTVKQESKDV K L T N R L 0 1 2 3 0 1 6 1 1 0 3 1 1 0 0 3 2 0 0 0 0 0 25 1 2905.252 Q8IX12;A0A0C4DGG8 Q8IX12 979 1003 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 3;4 4.1169E-36 129.85 By MS/MS By MS/MS 2 2 0.88304 0.92184 17.887 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69203 0.7846 6.2942 2 0 Median 1.13 1.0607 3.3416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36790000 19895000 16895000 0 0 0 0 0 0 32521000 17788000 14733000 4269600 2107200 2162400 0 0 0 0 0 0 23046 3331 24036 121450;121451;121452;121453 122595;122596;122597;122598 122596 4 LTEADYLSSHLTEGPHR DGLNRVLGLGLGCLRLTEADYLSSHLTEGP EADYLSSHLTEGPHRVVAHLYARQLTLEQL R L T H R V 1 1 0 1 0 0 2 1 2 0 3 0 0 0 1 2 2 0 1 0 0 0 17 0 1924.9279 Q9BRJ7;K7EIN2;K7ENA3;W4VSQ8 Q9BRJ7 91 107 NUDT16L1 Protein syndesmos yes no 3;4 5.771E-06 66.335 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 1.0521 0.98287 21.021 10 Median 0.83816 0.79034 46.981 2 0 Median NaN NaN NaN 0 0 Median 1.0234 0.98287 3.9861 2 0 Median 1.0607 0.87998 4.5224 2 0 Median 1.0598 1.1376 4.2749 3 0 Plateau 0.99516 0.80332 NaN 1 0 Median 100240000 48538000 51699000 14658000 7762500 6895000 0 0 0 55392000 25890000 29502000 9547700 4702200 4845500 17325000 8588500 8736600 3314400 1595000 1719400 23047 3796 24037 121454;121455;121456;121457;121458;121459;121460;121461;121462;121463 122599;122600;122601;122602;122603;122604;122605;122606;122607;122608;122609;122610;122611 122601 13 LTEAKPVDKVK EDIPIAKERTHFTVRLTEAKPVDKVKLIKE FTVRLTEAKPVDKVKLIKEIKNYIQGINLV R L T V K L 1 0 0 1 0 0 1 0 0 0 1 3 0 0 1 0 1 0 0 2 0 0 11 2 1226.7234 B4DLN1 B4DLN1 134 144 no no 3 0.036576 21.396 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.97418 1.101 10.948 5 Median 0.88785 0.96149 NaN 1 0 Median 1.232 1.1117 NaN 1 0 Median 0.92426 1.0429 NaN 1 0 Median 1.4095 1.2961 NaN 1 0 Median 0.97418 1.101 NaN 1 0 Median NaN NaN NaN 0 0 Median 5250000 2519400 2730600 1445100 719840 725310 659080 273650 385430 2147000 1150700 996280 962400 358940 603460 36376 16212 20165 0 0 0 23048 598 24038 121464;121465;121466;121467;121468 122612 122612 1 LTEAMGGGWQQEQFEHYK PLIIVSEEIEYLLKKLTEAMGGGWQQEQFE AMGGGWQQEQFEHYKINFDDSKNGLSAWEL K L T Y K I 1 0 0 0 0 3 3 3 1 0 1 1 1 1 0 0 1 1 1 0 0 0 18 0 2137.9527 Q9UH65;E7EMB1 Q9UH65 146 163 SWAP70 Switch-associated protein 70 yes no 3 0.00011203 38.777 By MS/MS By matching 1 1 1.1191 1.0317 11.043 2 Median 1.1674 1.1155 NaN 1 0 Median 1.0728 0.95418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6082600 2726100 3356500 5546500 2506300 3040200 536180 219790 316380 0 0 0 0 0 0 0 0 0 0 0 0 23049 4270 24039 121469;121470 122613;122614 122614 2 LTEDKADVQSIIGLQR EFAQDVGRMFKQFNKLTEDKADVQSIIGLQ TEDKADVQSIIGLQRFFETRMNEAFGDTKF K L T Q R F 1 1 0 2 0 2 1 1 0 2 2 1 0 0 0 1 1 0 0 1 0 0 16 1 1784.9632 Q13263;M0R0K9 Q13263 775 790 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 4.1166E-46 222.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 3 3 5 2 0.93808 0.99637 16.471 20 Median 0.88807 0.90367 6.958 4 1 Median 0.98505 0.95402 32.836 4 0 Median 1.0081 1.1456 11.308 3 0 Plateau 1.0952 1.0451 14.136 3 0 Median 0.91549 1.0148 6.9375 4 1 Median 1.2226 1.0946 15.934 2 0 Median 368330000 180130000 188200000 157650000 79381000 78266000 11091000 5050200 6040900 133410000 62979000 70436000 4976500 2317500 2659100 59278000 29529000 29748000 1925500 873780 1051700 23050 2802 24040 121471;121472;121473;121474;121475;121476;121477;121478;121479;121480;121481;121482;121483;121484;121485;121486;121487;121488;121489;121490;121491 122615;122616;122617;122618;122619;122620;122621;122622;122623;122624;122625;122626;122627;122628;122629;122630;122631;122632;122633;122634;122635;122636 122622 22 LTEDKETLQYLQQNAK KNTRNLDPLVYLLSKLTEDKETLQYLQQNA TEDKETLQYLQQNAKERAELAAAAVGSSTT K L T A K E 1 0 1 1 0 3 2 0 0 0 3 2 0 0 0 0 2 0 1 0 0 0 16 1 1920.9793 Q9BSJ2;F2Z2B9 Q9BSJ2 88 103 TUBGCP2 Gamma-tubulin complex component 2 yes no 3 4.3082E-05 63.894 By MS/MS By MS/MS 2 1 0.98353 1.056 21.317 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1452 1.2348 22.118 2 0 Median 0.98353 0.96081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11131000 5576300 5554300 0 0 0 0 0 0 9374200 4715300 4658800 1756400 860920 895460 0 0 0 0 0 0 23051 3815 24041 121492;121493;121494 122637;122638;122639 122638 3 LTEELKDQLK LKEHLTSEAASGNHRLTEELKDQLKDLKVK SGNHRLTEELKDQLKDLKVKYEGASAEVGK R L T L K D 0 0 0 1 0 1 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1215.6711 F5H2B9;H0YNH8;Q9BZF9;H0YN48 F5H2B9 429 438 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 2;3 0.0019974 74.92 By matching By MS/MS 2 2 1.1086 1.1462 67.278 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52621 0.60153 51.079 2 0 Median 1.8138 1.6954 15.267 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4879400 2357200 2522200 0 0 0 0 0 0 2548100 1476000 1072100 2331300 881170 1450100 0 0 0 0 0 0 23052 1026 24042 121495;121496;121497;121498 122640;122641 122641 2 LTEELKEQMK WDEKAVDKLKEKKERLTEELKEQMKAKRKE EKKERLTEELKEQMKAKRKEAELRQVQSQA R L T M K A 0 0 0 0 0 1 3 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 10 1 1247.6431 Q14683;G8JLG1 Q14683 681 690 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 4.861E-25 169.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 6 3 1.0064 1.0049 9.1703 20 Median 1.045 1.066 1.928 2 1 Median 1.0629 0.99228 3.7253 4 3 Median 0.86207 0.99881 5.4835 3 0 Plateau 1.2685 1.1925 9.5211 2 0 Median 0.92697 1.0206 5.2466 6 0 Median 1.0578 0.95314 13.295 3 1 Median 201630000 104070000 97561000 5169400 2194500 2974900 28116000 13523000 14593000 27874000 16037000 11837000 8106100 3638000 4468100 123770000 64711000 59055000 8599100 3964900 4634200 23053 2889 24043;24044 121499;121500;121501;121502;121503;121504;121505;121506;121507;121508;121509;121510;121511;121512;121513;121514;121515;121516;121517;121518;121519 122642;122643;122644;122645;122646;122647;122648;122649;122650;122651;122652;122653;122654;122655;122656;122657;122658;122659;122660;122661;122662;122663 122655 1580 22 LTEELNKEATVIQDLK EERSLREAAEQKVTRLTEELNKEATVIQDL TEELNKEATVIQDLKTELLQRPGIEDVAVL R L T L K T 1 0 1 1 0 1 3 0 0 1 3 2 0 0 0 0 2 0 0 1 0 0 16 1 1842.9939 Q15075 Q15075 196 211 EEA1 Early endosome antigen 1 yes yes 3 0.0016464 33.301 By MS/MS By matching 1 1 0.93415 0.91411 26.04 2 Median 0.78327 0.76038 NaN 1 0 Median 1.1141 1.0989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9153400 4961200 4192200 8954600 4882900 4071700 198790 78314 120470 0 0 0 0 0 0 0 0 0 0 0 0 23054 2926 24045 121520;121521 122664 122664 1 LTEFVADMTK LATMEERVQRRYYEKLTEFVADMTKIFDNC RYYEKLTEFVADMTKIFDNCRYYNPSDSPF K L T T K I 1 0 0 1 0 0 1 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 10 0 1153.5689 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;J3QQQ8;J3KSY0 Q12830 2989 2998 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0006139 94.692 By MS/MS By matching 1 2 1.2579 1.3415 18.529 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2579 1.3415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3184 1.1456 22.814 2 0 Median 25918000 12030000 13888000 0 0 0 0 0 0 25174000 11737000 13436000 0 0 0 0 0 0 743880 292580 451300 23055 2762 24046 121522;121523;121524 122665;122666 122665 2 LTEGCSFR GCSTVLCQPTGGKARLTEGCSFRRKQH___ PTGGKARLTEGCSFRRKQH___________ R L T F R R 0 1 0 0 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 968.43857 P42677;C9J1C5;H0YMV8;Q71UM5 P42677 73 80 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 0.0024268 127.12 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 4 1 1 1 2 1.2886 1.1021 11.519 10 Median 1.1586 1.1317 NaN 1 0 Median 1.1725 0.97421 9.2628 4 0 Median 1.1538 1.168 NaN 1 0 Median 1.3986 1.1157 NaN 1 0 Median 1.3494 1.369 NaN 1 0 Median 1.3825 1.0815 0.93778 2 0 Median 57088000 26073000 31016000 2382800 1149100 1233700 50302000 22871000 27430000 3005900 1448400 1557600 292360 134940 157430 711060 298330 412740 394500 170480 224030 23056 2312;1200 24047 121525;121526;121527;121528;121529;121530;121531;121532;121533;121534 122667;122668;122669;122670;122671;122672 122671 6 LTEHNETILFK PRKGQGRPDWAIFGRLTEHNETILFKEKFL IFGRLTEHNETILFKEKFLDWTELKRSNEK R L T F K E 0 0 1 0 0 0 2 0 1 1 2 1 0 1 0 0 2 0 0 0 0 0 11 0 1343.7085 O95425;A0A0J9YWY6 O95425 1666 1676 SVIL Supervillin yes no 3 0.05589 14.085 By MS/MS 1 0.59161 0.65941 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59161 0.65941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3147900 2371000 776950 0 0 0 0 0 0 3147900 2371000 776950 0 0 0 0 0 0 0 0 0 23057 1772 24048 121535 122673 122673 1 LTEHQVAEPPEDWPALIWQQQR RKSKKDDGDAAMGSRLTEHQVAEPPEDWPA EPPEDWPALIWQQQRELAELRHSQEELLQR R L T Q R E 2 1 0 1 0 4 3 0 1 1 2 0 0 0 3 0 1 2 0 1 0 0 22 0 2670.319 Q6P2E9 Q6P2E9 938 959 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 4.5182E-05 49.089 By MS/MS By MS/MS 2 1 0.69547 0.68157 14.591 3 Median 0.7077 0.69451 2.6587 2 2 Median NaN NaN NaN 0 0 Median 0.49141 0.54055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11274000 6650200 4624100 6347000 3584800 2762100 0 0 0 4927300 3065300 1862000 0 0 0 0 0 0 0 0 0 23058 3155 24049 121536;121537;121538 122674;122675;122676 122675 3 LTEKELAEAASK GSAVSSSKVLDKPSRLTEKELAEAASKWAA PSRLTEKELAEAASKWAAEKLEKSDESNLP R L T S K W 3 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 12 1 1288.6874 F8W0Q9;Q8NEY8;F8WF16;B7Z8L1;F8W6A0 F8W0Q9 242 253 PPHLN1 Periphilin-1 yes no 3 0.00051418 50.897 By MS/MS 1 0.82808 0.8838 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82808 0.8838 NaN 1 0 Median NaN NaN NaN 0 0 Median 9432300 5610900 3821400 0 0 0 0 0 0 0 0 0 0 0 0 9432300 5610900 3821400 0 0 0 23059 1080 24050 121539 122677;122678 122677 2 LTELELR L T L R 0 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 872.49673 REV__H7BYJ3 yes no 2 0.0031125 121.29 By matching By matching By MS/MS By matching By matching 1 1 2 1 2 1.0813 1.1324 30.194 7 Median 1.1129 1.0501 NaN 1 0 Median 2.0004 2.1172 NaN 1 0 Median 1.0662 1.1324 0 2 0 Median NaN NaN NaN 0 0 Median 1.0813 1.1438 NaN 1 0 Median 1.2214 1.0723 41.566 2 0 Median 34967000 16706000 18261000 9621100 4638500 4982600 1287300 460680 826590 19700000 9641700 10059000 0 0 0 2134500 929490 1205000 2223300 1035500 1187700 + 23060 4526 24051 121540;121541;121542;121543;121544;121545;121546 122679;122680 122679 2 LTELETAVR DKFSQAAKVAELEKRLTELETAVRCDQDAQ AELEKRLTELETAVRCDQDAQNPLSAGLQG R L T V R C 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 9 0 1030.5659 Q13561;H0YI98;F8W1I6;F8VW18;F8VRV7 Q13561 231 239 DCTN2 Dynactin subunit 2 yes no 2 7.4415E-26 170.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2218 1.0916 9.8317 4 Median 1.1651 1.1072 NaN 1 0 Median 1.2811 1.0762 NaN 1 0 Median 0.94976 0.93291 NaN 1 0 Median 1.3682 1.1765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76123000 36005000 40117000 15458000 6934800 8523000 18578000 8271100 10307000 16094000 8444400 7649300 25993000 12355000 13638000 0 0 0 0 0 0 23061 2824 24052 121547;121548;121549;121550 122681;122682;122683;122684;122685 122685 5 LTELGTVDPK TLQEKKEKIQTGLKKLTELGTVDPKNKYQE TGLKKLTELGTVDPKNKYQELINDIARDIR K L T P K N 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 2 0 0 1 0 0 10 0 1071.5812 P46940;H0YLE8 P46940 1466 1475 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00035174 102.07 By MS/MS By MS/MS 2 2 0.82663 0.79414 3.2614 3 Plateau 0.78839 0.77037 4.6058 2 0 Median 0.87193 0.77269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32496000 17400000 15096000 22182000 11793000 10389000 10315000 5607200 4707300 0 0 0 0 0 0 0 0 0 0 0 0 23062 2350 24053 121551;121552;121553;121554 122686;122687;122688;122689;122690 122687 5 LTELHQQTIR QNGQLGKPLAKKIGKLTELHQQTIRQAENR KKIGKLTELHQQTIRQAENRLSKLNQAASH K L T I R Q 0 1 0 0 0 2 1 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1237.6779 A0A0C4DG40;Q8NF91;E9PEL9 A0A0C4DG40 5433 5442 SYNE1 Nesprin-1 yes no 3 0.035134 20.777 By MS/MS 1 1.0164 1.1323 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0164 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 517000 275690 241310 0 0 0 0 0 0 517000 275690 241310 0 0 0 0 0 0 0 0 0 23063 233 24054 121555 122691 122691 1 LTELLDLYREDR GPDKENSGAIEASVKLTELLDLYREDRGAK SVKLTELLDLYREDRGAKWVTALEEIPSLI K L T D R G 0 2 0 2 0 0 2 0 0 0 4 0 0 0 0 0 1 0 1 0 0 0 12 1 1534.7991 Q69YN4 Q69YN4 385 396 KIAA1429 Protein virilizer homolog yes yes 3 0.0023729 38.402 By MS/MS By matching 2 1 0.94929 1.0115 20.263 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85884 0.9964 2.1229 2 0 Median 1.5602 1.414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5704500 3196000 2508500 0 0 0 0 0 0 5627800 3162800 2465000 76698 33203 43495 0 0 0 0 0 0 23064 3130 24055 121556;121557;121558 122692;122693 122692 2 LTELLLR GLQDKIKEVPRPRKRLTELLLRTATEKPGP EVPRPRKRLTELLLRTATEKPGPAEAARQA R L T L R T 0 1 0 0 0 0 1 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 7 0 856.5382 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 276 282 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 3.0562E-06 160.69 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1.6401 1.4069 32.368 6 Median 1.1314 1.128 NaN 1 0 Median 2.165 1.8732 NaN 1 0 Median 0.96247 0.9398 NaN 1 0 Median 2.1784 1.8866 11.32 2 0 Median NaN NaN NaN 0 0 Median 1.3271 1.1366 NaN 1 0 Median 71621000 29392000 42230000 2137400 1057700 1079700 1864000 595880 1268100 28026000 14357000 13669000 38536000 12923000 25613000 0 0 0 1057700 457610 600100 23065 2102 24056 121559;121560;121561;121562;121563;121564 122694;122695;122696;122697 122694 4 LTELSGNPR LKIGIIVTKSKRAEKLTELSGNPRKHITSL SKRAEKLTELSGNPRKHITSLKEAVDMTCH K L T P R K 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 9 0 985.51926 D6RID8;Q6P1K8;Q13888;D6RJD3;R4GMS9 D6RID8 100 108 GTF2H2C;GTF2H2 General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2 0.0073226 51.854 By MS/MS By MS/MS 1 1 1.0244 0.99504 14.717 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82496 0.89669 NaN 1 1 Median 1.2721 1.1042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2623600 1435400 1188100 0 0 0 0 0 0 2052500 1150100 902450 571040 285370 285670 0 0 0 0 0 0 23066 827 24057 121565;121566 122698;122699 122699 2 LTEMETLQSQLMAEK ELVKVREKQLAAENRLTEMETLQSQLMAEK LTEMETLQSQLMAEKLQLQEQLQAETELCA R L T E K L 1 0 0 0 0 2 3 0 0 0 3 1 2 0 0 1 2 0 0 0 0 0 15 0 1750.8481 P35579 P35579 868 882 MYH9 Myosin-9 yes yes 2;3 7.1993E-14 175.74 By MS/MS By matching By MS/MS By matching By MS/MS By matching 5 1 4 1 2 1 1.0378 1.1463 20.485 13 Median 1.216 1.1752 25.386 5 0 Median 1.0287 0.90995 NaN 1 0 Median 1.0018 1.116 9.2625 4 2 Median 1.0143 0.92252 NaN 1 0 Median 1.3575 1.4214 NaN 1 1 Median 0.92217 0.80102 NaN 1 0 Median 240720000 104970000 135750000 199300000 85314000 113980000 2174100 1000200 1174000 23487000 11605000 11882000 1316800 619770 697060 14298000 6343700 7954000 153700 89156 64539 23067 2244 24058;24059 121567;121568;121569;121570;121571;121572;121573;121574;121575;121576;121577;121578;121579;121580 122700;122701;122702;122703;122704;122705;122706;122707;122708;122709;122710;122711;122712;122713;122714;122715 122708 993;994 16 LTEPMVR SDKTRFAYDGLKRQRLTEPMVRNEKGLLTY YDGLKRQRLTEPMVRNEKGLLTYTSWEDAL R L T V R N 0 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 7 0 844.44767 P28331;B4DJ81 P28331 302 308 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.155 1.0664 15.856 2 Median 0.96797 0.9533 NaN 1 0 Median 1.3782 1.1929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4412100 2012300 2399900 2287100 1202800 1084200 2125100 809430 1315600 0 0 0 0 0 0 0 0 0 0 0 0 23068 2165 24060 121581;121582 122716;122717 122717 2 LTEQAVQAINK GDCDNGGDEWEQEIRLTEQAVQAINKLNPK QEIRLTEQAVQAINKLNPKPKFFVLCGDLI R L T N K L 2 0 1 0 0 2 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 11 0 1213.6667 Q9BRF8 Q9BRF8 67 77 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes yes 2 3.0262E-05 122.52 By MS/MS By MS/MS By MS/MS 1 1 1 0.84843 0.76979 17.689 3 Plateau 0.84843 0.76979 NaN 1 0 Median 0.85049 0.71319 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.65034 0.54937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56305000 30274000 26031000 31693000 16587000 15106000 22680000 12541000 10139000 0 0 0 1931900 1145400 786530 0 0 0 0 0 0 23069 3794 24061 121583;121584;121585 122718;122719;122720;122721 122720 4 LTEQLAGPLR LSCFVFQENSSEMPKLTEQLAGPLRQMQEC SEMPKLTEQLAGPLRQMQECAKRIAKVSAE K L T L R Q 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1096.6241 P42285 P42285 924 933 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 7.8138E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 2 4 1.0437 0.98192 69.562 13 Median 1.1778 1.137 NaN 1 0 Median 0.89797 0.92404 143.93 3 1 Median 0.9185 0.99262 1.5326 2 0 Median 1.0437 0.88429 NaN 1 0 Median 1.0223 1.0389 11.873 2 0 Median 1.1598 0.95697 20.501 4 1 Median 77860000 38857000 39003000 7409800 3654800 3755000 8485100 4997300 3487800 36358000 17309000 19050000 10491000 5154600 5336300 10328000 5581900 4745700 4788300 2160200 2628100 23070 2309 24062 121586;121587;121588;121589;121590;121591;121592;121593;121594;121595;121596;121597;121598 122722;122723;122724;122725;122726;122727;122728;122729 122724 7 LTESINR DVFREAHAQSIGMNRLTESINRDSEEPFSS AQSIGMNRLTESINRDSEEPFSSVEIQAAL R L T N R D 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 831.44503 P25205;J3KQ69;A0A499FHX9 P25205 768 774 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0069988 90.986 By MS/MS 1 1.2952 1.1192 NaN 1 Median NaN NaN NaN 0 0 Median 1.2952 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7505800 3443600 4062200 0 0 0 7505800 3443600 4062200 0 0 0 0 0 0 0 0 0 0 0 0 23071 2129 24063 121599 122730;122731 122730 2 LTESINRDSEEPFSSVEIQAALSK DVFREAHAQSIGMNRLTESINRDSEEPFSS EEPFSSVEIQAALSKMQDDNQVMVSEGIIF R L T S K M 2 1 1 1 0 1 4 0 0 2 2 1 0 1 1 5 1 0 0 1 0 0 24 1 2649.3134 P25205;J3KQ69;A0A499FHX9 P25205 768 791 MCM3 DNA replication licensing factor MCM3 yes no 3 5.6402E-08 45.099 By MS/MS By matching 1 1 0.69499 0.75715 4.973 2 Median 0.75317 0.78425 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6413 0.73099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8725200 4848100 3877100 7456300 4151000 3305400 0 0 0 1268900 697170 571690 0 0 0 0 0 0 0 0 0 23072 2129 24064 121600;121601 122732 122732 1 LTESLDFTDYASR APLPSRKAALETVDRLTESLDFTDYASRII DRLTESLDFTDYASRIIHPIVRTLDQSPEL R L T S R I 1 1 0 2 0 0 1 0 0 0 2 0 0 1 0 2 2 0 1 0 0 0 13 0 1516.7046 P42345 P42345 1142 1154 MTOR Serine/threonine-protein kinase mTOR yes yes 2 7.3272E-05 85.958 By MS/MS 1 0.85049 0.82785 NaN 1 Median 0.85049 0.82785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3594000 1603800 1990200 3594000 1603800 1990200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23073 2310 24065 121602 122733;122734 122734 2 LTESLNIFETIVNNR SEFDQVLMEDRLTNRLTESLNIFETIVNNR LTESLNIFETIVNNRVFSNVSIILFLNKTD R L T N R V 0 1 3 0 0 0 2 0 0 2 2 0 0 1 0 1 2 0 0 1 0 0 15 0 1761.9261 Q14344 Q14344 265 279 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 2 0.00066957 47.288 By MS/MS 1 1.2489 1.073 NaN 1 Median NaN NaN NaN 0 0 Median 1.2489 1.073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1124100 502150 621930 0 0 0 1124100 502150 621930 0 0 0 0 0 0 0 0 0 0 0 0 23074 2875 24066 121603 122735 122735 1 LTESVDVLMPNVGEIVGGSMR EIKSFYMQRCPEDSRLTESVDVLMPNVGEI VLMPNVGEIVGGSMRIFDSEEILAGYKREG R L T M R I 0 1 1 1 0 0 2 3 0 1 2 0 2 0 1 2 1 0 0 4 0 0 21 0 2202.1024 O43776 O43776 458 478 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.0012078 28.632 By matching By MS/MS 1 1 0.82283 0.76764 16.736 2 Median 0.67567 0.68196 NaN 1 0 Median 1.0021 0.86407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2159000 1165000 993990 754020 426020 328000 1404900 738960 665980 0 0 0 0 0 0 0 0 0 0 0 0 23075 1589 24067 121604;121605 122736;122737 122736 2 LTEVHEELQK SSSKLKQKLEAHMEKLTEVHEELQKKQELI AHMEKLTEVHEELQKKQELIEDLQPDINQN K L T Q K K 0 0 0 0 0 1 3 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1224.635 Q9UJC3 Q9UJC3 557 566 HOOK1 Protein Hook homolog 1 yes yes 2 0.010357 58.23 By MS/MS 1 0.7195 0.63794 NaN 1 Median NaN NaN NaN 0 0 Median 0.7195 0.63794 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1756000 843260 912780 0 0 0 1756000 843260 912780 0 0 0 0 0 0 0 0 0 0 0 0 23076 4295 24068 121606 122738 122738 1 LTEVLTDSHVK APKQLSSCLPNIVPKLTEVLTDSHVKVQKA IVPKLTEVLTDSHVKVQKAGQQALRQIGSV K L T V K V 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 1 2 0 0 2 0 0 11 0 1240.6663 Q92616 Q92616 1543 1553 GCN1L1 Translational activator GCN1 yes yes 2;3 0.00011268 125.57 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 4 1 1 2 3 1.5124 1.3407 18.298 13 Median 1.1459 1.1071 10.89 2 0 Median 1.5715 1.3973 15.862 4 0 Median 0.85475 0.95263 NaN 1 0 Median 1.3694 1.3045 NaN 1 0 Median 1.5377 1.6195 1.0026 2 0 Median 1.5073 1.2917 6.5121 3 1 Median 70182000 29485000 40697000 17688000 8276200 9411400 36218000 14468000 21750000 3838300 2051500 1786900 287830 123760 164070 3803800 1326300 2477500 8346300 3239200 5107100 23077 3544 24069 121607;121608;121609;121610;121611;121612;121613;121614;121615;121616;121617;121618;121619 122739;122740;122741;122742;122743;122744;122745;122746;122747;122748;122749;122750;122751 122745 13 LTEVPVEPVLTVHPESK HLLPERKDFPVESVKLTEVPVEPVLTVHPE EVPVEPVLTVHPESKSKTKTRSRSRGRARN K L T S K S 0 0 0 0 0 0 3 0 1 0 2 1 0 0 3 1 2 0 0 4 0 0 17 0 1873.0197 Q9H307 Q9H307 537 553 PNN Pinin yes yes 3 6.058E-06 73.707 By matching By MS/MS By matching 1 2 1 0.60765 0.62528 12.008 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47646 0.51183 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60765 0.62528 1.3945 2 0 Median 0.82125 0.67796 NaN 1 0 Median 54920000 33014000 21905000 0 0 0 0 0 0 2326800 1311300 1015600 0 0 0 50751000 30689000 20062000 1841600 1014100 827430 23078 3950 24070 121620;121621;121622;121623 122752;122753;122754 122752 3 LTEVQDDKEEEEEENPLLVPLEEK GVRGHQGLRDQKRMRLTEVQDDKEEEEEEN EEEEENPLLVPLEEKAVLQEEQANLWFSKG R L T E K A 0 0 1 2 0 1 9 0 0 0 4 2 0 0 2 0 1 0 0 2 0 0 24 1 2853.3655 Q8IY81 Q8IY81 495 518 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 5.4772E-05 33.187 By matching By MS/MS 1 1 0.6394 0.72381 15.961 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7084 0.81028 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57712 0.64656 NaN 1 0 Median NaN NaN NaN 0 0 Median 7234000 4215000 3019000 0 0 0 0 0 0 1540500 903530 636970 0 0 0 5693500 3311500 2382000 0 0 0 23079 3338 24071 121624;121625 122755;122756 122756 2 LTEVSISSDAFFPFRDNVDR PELLTEAEKKEWVEKLTEVSISSDAFFPFR ISSDAFFPFRDNVDRAKRSGVAYIAAPSGS K L T D R A 1 2 1 3 0 0 1 0 0 1 1 0 0 3 1 3 1 0 0 2 0 0 20 1 2314.123 P31939;H7C1S2 P31939 531 550 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 3 0.016879 18.296 By MS/MS 1 0.91075 0.8973 NaN 1 Median 0.91075 0.8973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7699800 3969700 3730100 7699800 3969700 3730100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23080 2207 24072 121626 122757;122758 122757 2 LTFASTLSHLR KAHQARAGVSQVLNRLTFASTLSHLRRLNS VLNRLTFASTLSHLRRLNSPIGRDGKLAKP R L T L R R 1 1 0 0 0 0 0 0 1 0 3 0 0 1 0 2 2 0 0 0 0 0 11 0 1244.6877 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 466 476 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2;3 4.0582E-05 83.397 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 3 1 1.1554 1.0815 29.159 9 Median 1.0795 1.0471 11.05 2 0 Median 1.8744 1.6552 NaN 1 0 Median 1.1554 1.2698 NaN 1 0 Median 1.217 1.0394 NaN 1 0 Median 1.0277 1.0815 31.123 3 0 Median 0.79219 0.67205 NaN 1 0 Median 23858000 11618000 12240000 9809900 4747400 5062500 873690 358200 515480 3567900 1790800 1777200 862450 349050 513400 8613000 4309900 4303000 130700 62646 68053 23081 671 24073 121627;121628;121629;121630;121631;121632;121633;121634;121635 122759;122760;122761;122762;122763;122764 122763 6 LTFDEYR KFTEILCLRSFPQLKLTFDEYRNISQKDIV LRSFPQLKLTFDEYRNISQKDIVDSIKGEL K L T Y R N 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 942.4447 P12429;D6RA82 P12429 211 217 ANXA3 Annexin A3;Annexin yes no 2 0.022964 57.281 By MS/MS 1 1.0406 0.86537 NaN 1 Median NaN NaN NaN 0 0 Median 1.0406 0.86537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15308000 7331900 7975800 0 0 0 15308000 7331900 7975800 0 0 0 0 0 0 0 0 0 0 0 0 23082 1981 24074 121636 122765;122766 122766 2 LTFDSSFSPNTGK GTEITVEDQLARGLKLTFDSSFSPNTGKKN LKLTFDSSFSPNTGKKNAKIKTGYKREHIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 3 2 0 0 0 0 0 13 0 1399.662 P21796;C9JI87 P21796 97 109 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 3.8663E-07 167.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1.1482 1.0329 27.976 8 Median 0.85179 0.7819 14.24 2 1 Median 1.2996 1.0908 NaN 1 0 Median 1.1259 1.0831 NaN 1 0 Median 1.1709 0.98501 NaN 1 1 Median 1.409 1.4441 28.722 3 1 Median NaN NaN NaN 0 0 Median 210280000 103100000 107180000 170240000 85602000 84634000 16832000 7228200 9604000 9118700 4235900 4882800 4407100 1952000 2455200 9686600 4080200 5606400 0 0 0 23083 2092 24075 121637;121638;121639;121640;121641;121642;121643;121644 122767;122768;122769;122770;122771;122772;122773;122774;122775;122776;122777;122778 122772 12 LTFDSSFSPNTGKK GTEITVEDQLARGLKLTFDSSFSPNTGKKN KLTFDSSFSPNTGKKNAKIKTGYKREHINL K L T K K N 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 3 2 0 0 0 0 0 14 1 1527.7569 P21796;C9JI87 P21796 97 110 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 9.3026E-08 101.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 4 4 1.2068 1.108 20.299 18 Median 0.96036 0.92099 19.569 3 0 Median 1.0834 0.97495 24.229 4 2 Median 0.92361 0.9657 NaN 1 0 Median 1.2617 1.1079 12.707 2 0 Median 1.2961 1.3674 10.089 4 0 Median 1.3093 1.108 12.162 4 0 Median 381790000 183430000 198360000 233160000 116900000 116250000 91472000 42301000 49171000 7668900 3280800 4388100 16448000 7299900 9147700 21658000 8902300 12755000 11384000 4743600 6640500 23084 2092 24076 121645;121646;121647;121648;121649;121650;121651;121652;121653;121654;121655;121656;121657;121658;121659;121660;121661;121662;121663;121664 122779;122780;122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791;122792;122793;122794;122795;122796;122797;122798;122799;122800;122801;122802;122803 122791 25 LTFDTTFSPNTGK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS LKLTFDTTFSPNTGKKSGKIKSSYKRECIN K L T G K K 0 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 4 0 0 0 0 0 13 0 1427.6933 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1 A0A0A0MR02 108 120 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 6.6201E-07 141.95 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1282 0.96237 22.151 5 Median 0.95086 0.87152 14.023 2 0 Median 1.2491 1.0486 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1282 0.94927 NaN 1 0 Median 1.4443 1.4448 NaN 1 1 Median NaN NaN NaN 0 0 Median 225280000 113970000 111310000 196740000 101800000 94942000 15496000 6678700 8817200 0 0 0 4269000 1962800 2306200 8774300 3529400 5244900 0 0 0 23085 151 24077 121665;121666;121667;121668;121669;121670 122804;122805;122806;122807;122808;122809;122810;122811;122812;122813;122814 122809 11 LTFDTTFSPNTGKK GTEIAIEDQICQGLKLTFDTTFSPNTGKKS KLTFDTTFSPNTGKKSGKIKSSYKRECINL K L T K K S 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 1 4 0 0 0 0 0 14 1 1555.7882 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1 A0A0A0MR02 108 121 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2;3 8.3967E-07 131.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 3 4 1.2025 1.0409 19.84 13 Median 0.95689 0.92052 5.3238 3 0 Plateau 1.3336 1.2007 1.5048 2 0 Median NaN NaN NaN 0 0 Median 1.0982 0.96432 NaN 1 0 Median 1.3268 1.4141 11.628 3 0 Median 1.1548 0.97675 11.046 4 0 Median 308370000 153990000 154380000 256600000 131120000 125470000 28472000 12354000 16118000 0 0 0 1676600 716390 960200 12478000 5432400 7045900 9150500 4367600 4782900 23086 151 24078 121671;121672;121673;121674;121675;121676;121677;121678;121679;121680;121681;121682;121683 122815;122816;122817;122818;122819;122820;122821;122822;122823;122824;122825;122826;122827;122828;122829;122830 122817 16 LTFENIMEK SEQFEELQSILKKGKLTFENIMEKLRIKYS ILKKGKLTFENIMEKLRIKYSEMYTIVPAE K L T E K L 0 0 1 0 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 9 0 1123.5583 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3633 3641 SYNE2 Nesprin-2 yes no 2 0.0071843 52.278 By matching By MS/MS By matching 1 1 1 1.4277 1.3122 32.358 3 Median NaN NaN NaN 0 0 Median 1.9229 1.7085 NaN 1 0 Median 0.8335 0.89756 NaN 1 0 Median 1.4277 1.3122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5532700 2690900 2841800 0 0 0 453520 137230 316290 4685500 2415800 2269800 393670 137960 255710 0 0 0 0 0 0 23087 3521 24079 121684;121685;121686 122831 122831 1 LTFISGR LSSSLKRFDDKYTLKLTFISGRTKQQREAE FDDKYTLKLTFISGRTKQQREAEFTKSIAK K L T G R T 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 0 0 7 0 792.44939 A0A087WUC6;E9PI68;Q15005;E9PL01;E9PRB9 A0A087WUC6 175 181 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.035027 60.76 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6761600 0 6761600 4295400 0 4295400 0 0 0 2466200 0 2466200 0 0 0 0 0 0 0 0 0 23088 29 24080 121687;121688 122832;122833 122832 2 LTFLNSFK YPFGIDPIWNIATNKLTFLNSFKMKMSVIL WNIATNKLTFLNSFKMKMSVILGIIHMLFG K L T F K M 0 0 1 0 0 0 0 0 0 0 2 1 0 2 0 1 1 0 0 0 0 0 8 0 968.53312 Q93050;B7Z641;B7Z2A9;F5H1T6;Q9Y487 Q93050 529 536 ATP6V0A1;ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a;V-type proton ATPase 116 kDa subunit a isoform 2 no no 2 0.0095557 60.59 By MS/MS By matching By matching 3 3 1 1.3186 1.1973 8.2973 7 Median 1.2222 1.2129 10.002 3 0 Plateau 1.3873 1.1973 2.3364 3 0 Plateau NaN NaN NaN 0 0 Median 1.4459 1.3098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7432100 3081900 4350100 4555800 1917700 2638100 2788200 1135100 1653100 0 0 0 88020 29055 58965 0 0 0 0 0 0 23089 3576;4440 24081 121689;121690;121691;121692;121693;121694;121695 122834;122835 122834 2 LTFLYLANDVIQNSK SVWHRELRKAKSNRKLTFLYLANDVIQNSK LTFLYLANDVIQNSKRKGPEFTREFESVLV K L T S K R 1 0 2 1 0 1 0 0 0 1 3 1 0 1 0 1 1 0 1 1 0 0 15 0 1737.9301 Q9NQG5;E9PIQ9;Q96P16;A0A0C4DGQ6 Q9NQG5 57 71 RPRD1B;RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A no no 2 0.0085651 32.008 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.0603 0.98919 9.044 5 Median 1.0603 1.0241 NaN 1 0 Median 1.3764 1.1578 NaN 1 0 Median 0.95856 0.9196 NaN 1 0 Median 1.1837 0.98919 NaN 1 0 Median 0.94912 0.94185 NaN 1 0 Median NaN NaN NaN 0 0 Median 9599900 4821700 4778200 140100 51363 88742 76062 22209 53853 5753800 2933200 2820600 113410 47558 65853 3516500 1767400 1749200 0 0 0 23090 4062;3709 24082 121696;121697;121698;121699;121700 122836;122837 122837 2 LTFMDLELK GALFTNDKFQVSTNKLTFMDLELKLKDKNT QVSTNKLTFMDLELKLKDKNTLFTRILNGQ K L T L K L 0 0 0 1 0 0 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 0 9 0 1108.5838 A6NHR9;J3KRK8 A6NHR9 526 534 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0074886 51.346 By matching By MS/MS By matching By matching 1 2 1 1 0.98085 1.0927 18.257 5 Median NaN NaN NaN 0 0 Median 1.3332 1.1565 NaN 1 0 Median 0.95844 1.0516 5.4298 2 0 Median 1.2397 1.1148 NaN 1 0 Median 0.70952 0.73731 NaN 1 0 Median NaN NaN NaN 0 0 Median 6552900 3230000 3322900 0 0 0 735020 322920 412100 4848600 2401700 2446800 216420 93717 122710 752910 411630 341280 0 0 0 23091 518 24083 121701;121702;121703;121704;121705 122838;122839 122838 2 LTFNNPTTEFR NLEGNPPVNHLRCEKLTFNNPTTEFRYKLL RCEKLTFNNPTTEFRYKLLRAGGVMVMPEG K L T F R Y 0 1 2 0 0 0 1 0 0 0 1 0 0 2 1 0 3 0 0 0 0 0 11 0 1338.6568 Q03111 Q03111 122 132 MLLT1 Protein ENL yes yes 2 0.0025551 76.572 By MS/MS 1 1.7086 1.7315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7086 1.7315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18369000 8310300 10059000 0 0 0 0 0 0 18369000 8310300 10059000 0 0 0 0 0 0 0 0 0 23092 2706 24084 121706 122840 122840 1 LTFRPHSTDSATHR RQGTGLQGQAVFKTKLTFRPHSTDSATHRK KLTFRPHSTDSATHRKMTLSLADRCSKTQK K L T H R K 1 2 0 1 0 0 0 0 2 0 1 0 0 1 1 2 3 0 0 0 0 0 14 1 1624.807 Q8WVC0 Q8WVC0 489 502 LEO1 RNA polymerase-associated protein LEO1 yes yes 4 0.031177 27.335 By matching By MS/MS By MS/MS 1 1 1 0.94405 0.95928 12.864 3 Median 0.97366 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8302 0.95928 NaN 1 0 Median 0.94405 0.83652 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2811400 1379700 1431700 156020 86954 69067 0 0 0 1842500 855710 986800 812910 437040 375870 0 0 0 0 0 0 23093 3500 24085 121707;121708;121709 122841;122842;122843 122842 3 LTFSCLGGSDNFK VEDSKDVNVNFEKSKLTFSCLGGSDNFKHL SKLTFSCLGGSDNFKHLNEIDLFHCIDPND K L T F K H 0 0 1 1 1 0 0 2 0 0 2 1 0 2 0 2 1 0 0 0 0 0 13 0 1444.6657 Q15185;A0A087WYT3 Q15185 36 48 PTGES3 Prostaglandin E synthase 3 yes no 2 0.00054372 70.977 By MS/MS By MS/MS 1 2 1.1519 1.0855 6.8338 3 Median 1.1504 1.0855 NaN 1 0 Median 1.2376 1.053 9.34 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26268000 12286000 13981000 13456000 6403200 7052600 12812000 5883000 6928700 0 0 0 0 0 0 0 0 0 0 0 0 23094 87 24086 121710;121711;121712 122844;122845;122846 122845 3 LTGADGTPPGFLLK YTTTRLGIYTVLFERLTGADGTPPGFLLKA RLTGADGTPPGFLLKAVIGMTAGATGAFVG R L T L K A 1 0 0 1 0 0 0 3 0 0 3 1 0 1 2 0 2 0 0 0 0 0 14 0 1385.7555 I3L1P8;Q02978 I3L1P8 98 111 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 3.5879E-07 115.7 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 0.83219 0.81831 16.259 7 Median 0.78321 0.7779 21.5 2 0 Median 1.2171 1.025 0.71704 2 0 Median 0.79415 0.75416 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8012 0.81831 NaN 1 0 Median 0.91792 0.76381 NaN 1 0 Median 59300000 32836000 26464000 46584000 26589000 19996000 5921100 2613700 3307500 3815700 2115900 1699800 0 0 0 2441000 1280700 1160300 538160 236960 301200 23095 1277 24087 121713;121714;121715;121716;121717;121718;121719 122847;122848;122849;122850;122851;122852;122853;122854 122850 8 LTGDVEELEIQEKPALK PYTGPFNLLCYQLQKLTGDVEELEIQEKPA GDVEELEIQEKPALKVFKNITVIQEPGMVV K L T L K V 1 0 0 1 0 1 4 1 0 1 3 2 0 0 1 0 1 0 0 1 0 0 17 1 1911.0201 Q9UKF6;G5E9W3 Q9UKF6 533 549 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3 2.4593E-06 82.813 By MS/MS By matching 1 2 0.92408 0.90168 1.5174 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80457 0.87882 NaN 1 0 Median 0.94994 0.9022 0.08251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61682000 33905000 27776000 0 0 0 0 0 0 58039000 32056000 25983000 3643000 1849600 1793400 0 0 0 0 0 0 23096 4309 24088 121720;121721;121722 122855;122856 122856 2 LTGDVLQPPGTSVPIVK CKYDSRDIFPAGWCRLTGDVLQPPGTSVPI GDVLQPPGTSVPIVKNIAKTESSPSEASQH R L T V K N 0 0 0 1 0 1 0 2 0 1 2 1 0 0 3 1 2 0 0 3 0 0 17 0 1719.9771 Q9UQR0 Q9UQR0 232 248 SCML2 Sex comb on midleg-like protein 2 yes yes 2 2.3647E-07 93.839 By MS/MS By matching By MS/MS By matching 2 4 1 1 0.67786 0.64846 13.849 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57968 0.60989 16.944 2 0 Median 0.76862 0.66396 8.3314 4 0 Median 0.51381 0.5309 NaN 1 0 Median 0.61967 0.53124 NaN 1 0 Median 38434000 23445000 14989000 0 0 0 0 0 0 33088000 20464000 12624000 2448500 1393600 1054900 2692400 1467700 1224800 204920 119460 85460 23097 4363 24089 121723;121724;121725;121726;121727;121728;121729;121730 122857;122858;122859;122860;122861 122860 5 LTGEDVFGITVPLITSTTGAK DQLGNIMSGYEFINKLTGEDVFGITVPLIT FGITVPLITSTTGAKLGKSAGNAVWLNRDK K L T A K L 1 0 0 1 0 0 1 3 0 2 2 1 0 1 1 1 5 0 0 2 0 0 21 0 2119.1413 Q9Y2Z4;H0YHS6 Q9Y2Z4 261 281 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2;3 2.6459E-11 66.533 By matching By MS/MS 1 2 0.93723 0.97916 5.0779 3 Plateau 0.93723 0.90311 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96621 0.9595 5.2071 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9772200 4976700 4795400 104430 54404 50025 0 0 0 9667700 4922300 4745400 0 0 0 0 0 0 0 0 0 23098 4399 24090 121731;121732;121733 122862;122863;122864 122863 3 LTGEVVALKK IGEGTYGVVYKARNKLTGEVVALKKIRLDT KARNKLTGEVVALKKIRLDTETEGVPSTAI K L T K K I 1 0 0 0 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 2 0 0 10 1 1056.6543 G3V5T9;P24941;E7ESI2;G3V317 G3V5T9 25 34 CDK2 Cyclin-dependent kinase 2 yes no 2 0.00053883 80.438 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0641 1.0076 7.7044 4 Median 0.91136 0.88838 NaN 1 0 Median 1.1142 1.0037 NaN 1 0 Median 1.0161 1.0657 NaN 1 0 Median 1.1519 1.0114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12440000 6088200 6351600 3319000 1841600 1477400 4334000 2131400 2202600 2814400 1210800 1603700 1972400 904430 1067900 0 0 0 0 0 0 23099 1120 24091 121734;121735;121736;121737 122865;122866;122867;122868;122869;122870;122871 122869 7 LTGFHETSNINDFSAGVANR IRAYDPKGGLDNARRLTGFHETSNINDFSA ETSNINDFSAGVANRSASIRIPRTVGQEKK R L T N R S 2 1 3 1 0 0 1 2 1 1 1 0 0 2 0 2 2 0 0 1 0 0 20 0 2149.0188 A0A2R8YDT1;P15104 A0A2R8YDT1 434 453 GLUL Glutamine synthetase yes no 3 2.1453E-19 148.44 By MS/MS By matching By MS/MS 1 1 1 1.0002 1.0885 32.019 3 Median 0.94887 0.94902 NaN 1 0 Median 2.0139 1.7471 NaN 1 0 Median 1.0002 1.0885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34028000 16595000 17433000 24014000 11651000 12363000 833390 256360 577030 9180600 4687400 4493200 0 0 0 0 0 0 0 0 0 23100 398 24092 121738;121739;121740 122872;122873;122874;122875 122872 4 LTGGTKDYIVVGSDSGR TVEVFGVIRSLMAFRLTGGTKDYIVVGSDS GGTKDYIVVGSDSGRIVILEYQPSKNMFEK R L T G R I 0 1 0 2 0 0 0 4 0 1 1 1 0 0 0 2 2 0 1 2 0 0 17 1 1723.8741 Q15393;J3QRB2;J3QL37 Q15393 70 86 SF3B3 Splicing factor 3B subunit 3 yes no 3 3.1755E-08 76.586 By MS/MS 1 2.9606 3.4374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.9606 3.4374 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21742000 5566200 16176000 0 0 0 0 0 0 21742000 5566200 16176000 0 0 0 0 0 0 0 0 0 23101 2946 24093 121741 122876 122876 1 LTGIKHELQANCYEEVK SKMIYASSKDAIKKKLTGIKHELQANCYEE GIKHELQANCYEEVKDRCTLAEKLGGSAVI K L T V K D 1 0 1 0 1 1 3 1 1 1 2 2 0 0 0 0 1 0 1 1 0 0 17 1 2031.0095 P23528;G3V1A4;E9PK25;E9PP50 P23528 128 144 CFL1 Cofilin-1 yes no 3 0.00053943 47.548 By MS/MS 2 0.97827 0.86496 4.968 2 Median NaN NaN NaN 0 0 Median 0.97827 0.86496 4.968 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936300 2531100 2405200 0 0 0 4936300 2531100 2405200 0 0 0 0 0 0 0 0 0 0 0 0 23102 2118 24094 121742;121743 122877;122878 122877 2 LTGIKHELQANCYEEVKDR SKMIYASSKDAIKKKLTGIKHELQANCYEE KHELQANCYEEVKDRCTLAEKLGGSAVISL K L T D R C 1 1 1 1 1 1 3 1 1 1 2 2 0 0 0 0 1 0 1 1 0 0 19 2 2302.1376 P23528;G3V1A4;E9PK25;E9PP50 P23528 128 146 CFL1 Cofilin-1 yes no 4 3.7115E-07 59.372 By MS/MS 1 1.1003 1.1258 NaN 1 Median NaN NaN NaN 0 0 Median 1.1003 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6505700 2667200 3838500 0 0 0 6505700 2667200 3838500 0 0 0 0 0 0 0 0 0 0 0 0 23103 2118 24095 121744 122879;122880 122880 2 LTGMAFR AAKAVGKVIPELNGKLTGMAFRVPTANVSV VIPELNGKLTGMAFRVPTANVSVVDLTCRL K L T F R V 1 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 794.41089 P04406;E7EUT5;O14556 P04406 228 234 GAPDH;GAPDHS Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific yes no 2 0.019213 79.454 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 8 2 3 1 1.1846 1.0217 27.92 11 Median 1.1846 1.18 35.312 3 0 Plateau 1.2204 1.0215 24.762 4 0 Median 1.2165 1.2051 NaN 1 0 Median 0.99438 0.84651 38.726 2 0 Median 0.64909 0.65934 NaN 1 0 Median NaN NaN NaN 0 0 Median 638670000 24505000 614170000 269820000 8472000 261350000 330830000 11942000 318890000 29166000 2319200 26847000 8740500 1703800 7036700 113600 68259 45345 0 0 0 23104 1850 24096;24097 121745;121746;121747;121748;121749;121750;121751;121752;121753;121754;121755;121756;121757;121758;121759;121760;121761;121762;121763 122881;122882;122883;122884;122885;122886;122887;122888;122889;122890;122891;122892;122893;122894;122895;122896 122896 609 16 LTGMERDLVAIEAKLSDLQK DLGNDLAGVMALQRKLTGMERDLVAIEAKL RDLVAIEAKLSDLQKEAEKLESEHPDQAQA K L T Q K E 2 1 0 2 0 1 2 1 0 1 4 2 1 0 0 1 1 0 0 1 0 0 20 2 2229.2039 Q01082;A0A087WUZ3 Q01082 998 1017 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.042788 34.721 By MS/MS 2 0.013782 0.015718 123.89 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.013782 0.015718 123.89 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58353000 57720000 633390 0 0 0 0 0 0 58353000 57720000 633390 0 0 0 0 0 0 0 0 0 23105 2681 24098 121764;121765 122897;122898 122897 2 LTGRDPNDVRPIQAR KAKESLKNVDENIRKLTGRDPNDVRPIQAR LTGRDPNDVRPIQARLLALSGPGGGRGRGS K L T A R L 1 3 1 2 0 1 0 1 0 1 1 0 0 0 2 0 1 0 0 1 0 0 15 2 1706.9176 Q9H307;G3V5F0;G3V579 Q9H307 29 43 PNN Pinin yes no 3;4 0.0018657 34.82 By MS/MS 5 0.6947 0.81641 15.349 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6947 0.81641 15.349 5 0 Median NaN NaN NaN 0 0 Median 23273000 12888000 10384000 0 0 0 0 0 0 0 0 0 0 0 0 23273000 12888000 10384000 0 0 0 23106 3950 24099 121766;121767;121768;121769;121770 122899;122900;122901;122902;122903 122900 5 LTGSLSGWSSPK GIPWELKCPKVIGVKLTGSLSGWSSPKDVI GVKLTGSLSGWSSPKDVILKVAGILTVKGG K L T P K D 0 0 0 0 0 0 0 2 0 0 2 1 0 0 1 4 1 1 0 0 0 0 12 0 1218.6245 A2A274;Q99798 A2A274 234 245 ACO2 Aconitate hydratase, mitochondrial yes no 2 3.7563E-05 96.015 By MS/MS By matching By matching 1 1 1 0.96012 0.85676 34.993 3 Median 0.96012 0.85676 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0069 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65941 0.54219 NaN 1 0 Median 24116000 11357000 12759000 21939000 10252000 11687000 0 0 0 1712700 826410 886250 0 0 0 0 0 0 464080 278680 185400 23107 495 24100 121771;121772;121773 122904;122905 122905 2 LTGSSAQEEASGVALGEAPDHSYESLR RLTGSNYPGLSISLRLTGSSAQEEASGVAL VALGEAPDHSYESLRVTSAQKHVLHVQLNR R L T L R V 4 1 0 1 0 1 4 3 1 0 3 0 0 0 1 5 1 0 1 1 0 0 27 0 2760.2838 M0QYT0;Q13011;M0R248;M0QZW4 M0QYT0 203 229 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial no no 3 0.0078387 23.223 By MS/MS 1 0.71546 0.68057 NaN 1 Median 0.71546 0.68057 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4351900 2640000 1711900 4351900 2640000 1711900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23108 1419;2778 24101 121774 122906 122906 1 LTGSVLEDAWK NPMDDNLICAVKLLKLTGSVLEDAWKEKGK KLLKLTGSVLEDAWKEKGKMDMEEIIQRIE K L T W K E 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 1 1 0 1 0 0 11 0 1217.6292 Q9H074;D6REB4 Q9H074 325 335 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes no 2;3 0.00065281 65.305 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 2 2 2 1.1361 1.021 9.8007 9 Median 1.074 1.0276 NaN 1 0 Median 1.116 0.95643 15.644 2 0 Median 0.9303 1.0096 18.542 2 0 Median 1.21 1.0524 4.2791 2 0 Median NaN NaN NaN 0 0 Median 1.1576 0.96158 5.502 2 0 Median 21153000 10080000 11073000 5131400 2616700 2514700 9132100 4508700 4623400 4721000 2082900 2638100 965810 411140 554680 0 0 0 1203000 460560 742450 23109 3919 24102 121775;121776;121777;121778;121779;121780;121781;121782;121783 122907;122908;122909 122908 3 LTGTIQNDILK NFIVTGEEQGVPKEKLTGTIQNDILKEFMV PKEKLTGTIQNDILKEFMVRNTYIFPPEPS K L T L K E 0 0 1 1 0 1 0 1 0 2 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1214.6871 P22033 P22033 213 223 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 0.0023 77.662 By MS/MS 1 0.64007 0.58212 NaN 1 Median 0.64007 0.58212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10625000 6218100 4406500 10625000 6218100 4406500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23110 2095 24103 121784 122910 122910 1 LTGVFAPR HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK KHWMLDKLTGVFAPRPSTGPHKLRECLPLI K L T P R P 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 8 0 859.49159 P62701;Q8TD47 P62701 23 30 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2 0.0027345 105.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.0217 0.93114 9.5152 8 Median 0.98959 0.92246 NaN 1 0 Median 0.8861 0.83243 17.171 2 0 Median 1.009 0.96928 NaN 1 0 Median 1.0529 0.87334 3.4565 2 0 Median 0.98722 0.99507 NaN 1 0 Median 1.1798 0.94768 NaN 1 0 Median 213370000 107240000 106130000 141970000 72288000 69682000 25667000 12836000 12832000 15423000 7714600 7708500 2220000 1062300 1157700 18573000 8908900 9664200 9515100 4429800 5085300 23111 2593 24104 121785;121786;121787;121788;121789;121790;121791;121792 122911;122912;122913;122914;122915;122916;122917;122918;122919;122920;122921;122922 122912 12 LTGVFAPRPSTGPHK HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK LTGVFAPRPSTGPHKLRECLPLIIFLRNRL K L T H K L 1 1 0 0 0 0 0 2 1 0 1 1 0 1 3 1 2 0 0 1 0 0 15 1 1563.8522 P62701;Q8TD47 P62701 23 37 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2;3 2.4193E-09 162.49 By MS/MS By MS/MS By matching By MS/MS 4 2 1 1 0.7324 0.72021 21.631 8 Median 0.69354 0.70547 28.232 4 0 Median 0.82065 0.7511 8.9965 2 0 Median 0.55253 0.57485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73871 0.78424 NaN 1 0 Median NaN NaN NaN 0 0 Median 190140000 109720000 80430000 132060000 78215000 53840000 23242000 12546000 10696000 7222200 4473000 2749200 0 0 0 27626000 14481000 13144000 0 0 0 23112 2593 24105 121793;121794;121795;121796;121797;121798;121799;121800 122923;122924;122925;122926;122927;122928 122924 6 LTGVIVENENITK LDGKQGKVIMPLGSKLTGVIVENENITKEG SKLTGVIVENENITKEGGLVDMAKKENDLN K L T T K E 0 0 2 0 0 0 2 1 0 2 1 1 0 0 0 0 2 0 0 2 0 0 13 0 1428.7824 Q8NFC6 Q8NFC6 1390 1402 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 1.6033E-06 111.86 By MS/MS By MS/MS 1 2 1.0332 1.0005 7.218 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83654 0.89082 NaN 1 1 Median 1.0418 1.0087 1.1424 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46306000 24262000 22044000 0 0 0 0 0 0 40600000 21385000 19215000 5705500 2877000 2828500 0 0 0 0 0 0 23113 3434 24106 121801;121802;121803 122929;122930;122931 122929 3 LTGVPAALDLITSGR LGLLPGARGTQLLPRLTGVPAALDLITSGR LTGVPAALDLITSGRRILADEALKLGILDK R L T G R R 2 1 0 1 0 0 0 2 0 1 3 0 0 0 1 1 2 0 0 1 0 0 15 0 1482.8406 Q08426 Q08426 142 156 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.00052444 48.741 By matching By MS/MS By matching 1 1 1 1.2849 1.1134 4.9953 3 Median NaN NaN NaN 0 0 Median 1.2849 1.1134 NaN 1 0 Median 0.99997 1.0573 NaN 1 0 Median 1.4045 1.1684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5390500 2216900 3173600 0 0 0 3525400 1364700 2160700 1676000 772000 903950 189130 80222 108910 0 0 0 0 0 0 23114 2740 24107 121804;121805;121806 122932;122933 122932 2 LTGVSISQVNHKPLR EVLDILTRLPESVERLTGVSISQVNHKPLR LTGVSISQVNHKPLRTA_____________ R L T L R T 0 1 1 0 0 1 0 1 1 1 2 1 0 0 1 2 1 0 0 2 0 0 15 1 1647.942 O75955;A0A140T9R1;A0A140T9W4;A0A140T974 O75955 411 425 FLOT1 Flotillin-1 yes no 3;4 9.1681E-05 67.275 By matching By matching By MS/MS 1 1 2 1.097 1.1083 43.179 4 Median 0.49215 0.49204 NaN 1 0 Median 1.3309 1.2166 NaN 1 0 Median 1.097 1.1114 13.581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18961000 9159800 9801200 3629500 2165300 1464200 1532100 521290 1010800 13800000 6473200 7326300 0 0 0 0 0 0 0 0 0 23115 1712 24108 121807;121808;121809;121810 122934;122935 122934 2 LTHDVELNLDYER VARAAAEVAGQFVIKLTHDVELNLDYERYN IKLTHDVELNLDYERYNSQLLSFVRDLNQY K L T E R Y 0 1 1 2 0 0 2 0 1 0 3 0 0 0 0 0 1 0 1 1 0 0 13 0 1615.7842 P02786;G3V0E5;H7C3V5 P02786 601 613 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 3 1.5308E-05 87.18 By MS/MS By MS/MS By MS/MS 3 1 2 1.202 1.0871 42.237 6 Median 1.2479 1.1808 24.4 3 1 Median 1.1578 1.0008 NaN 1 0 Median 1.4163 1.488 77.511 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30134000 13049000 17085000 18841000 8311100 10530000 6570400 2827300 3743100 4722700 1910500 2812300 0 0 0 0 0 0 0 0 0 23116 1836 24109 121811;121812;121813;121814;121815;121816 122936;122937;122938;122939;122940;122941 122937 6 LTHFDHYNQYEQQK QPSLHHPSTNQNQTKLTHFDHYNQYEQQKM KLTHFDHYNQYEQQKMHLMDQPNRMMSNTP K L T Q K M 0 0 1 1 0 3 1 0 2 0 1 1 0 1 0 0 1 0 2 0 0 0 14 0 1849.8384 Q9P2D1 Q9P2D1 66 79 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.030682 18.391 By MS/MS 1 0.89873 0.97113 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89873 0.97113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3914800 2169500 1745300 0 0 0 0 0 0 3914800 2169500 1745300 0 0 0 0 0 0 0 0 0 23117 4220 24110 121817 122942 122942 1 LTHLHEGLPVK IESPRKGWSFMHPGRLTHLHEGLPVKNGTR HPGRLTHLHEGLPVKNGTRYIAVSFIDP__ R L T V K N 0 0 0 0 0 0 1 1 2 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1242.7085 O00469;E7ETU9 O00469 714 724 PLOD2 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 yes no 3 0.010499 28.384 By matching By MS/MS By MS/MS 2 1 1 0.93233 0.88235 31.673 4 Median 0.6526 0.66395 7.4974 2 0 Median 1.2622 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3428 1.1723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4614000 2258400 2355500 1346800 783530 563230 2760900 1274100 1486800 0 0 0 506300 200830 305460 0 0 0 0 0 0 23118 890 24111 121818;121819;121820;121821 122943;122944 122943 2 LTHVDSPLEAPAGPLGQVK GPPHITSSAPELRQRLTHVDSPLEAPAGPL DSPLEAPAGPLGQVKLTLWYYSEERKLVSI R L T V K L 2 0 0 1 0 1 1 2 1 0 3 1 0 0 3 1 1 0 0 2 0 0 19 0 1928.0367 Q9BSJ8 Q9BSJ8 958 976 ESYT1 Extended synaptotagmin-1 yes yes 3 0.0012784 43.261 By MS/MS 1 0.83434 0.80366 NaN 1 Median 0.83434 0.80366 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22993000 9320600 13673000 22993000 9320600 13673000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23119 3816 24112 121822 122945 122945 1 LTHYDHVLIELTQAGLK ELINKKRIIEKVIHRLTHYDHVLIELTQAG HYDHVLIELTQAGLKGSTEGSESYEEDPYL R L T L K G 1 0 0 1 0 1 1 1 2 1 4 1 0 0 0 0 2 0 1 1 0 0 17 0 1950.0575 Q14566 Q14566 780 796 MCM6 DNA replication licensing factor MCM6 yes yes 2;3;4 2.2039E-06 82.59 By MS/MS By MS/MS By MS/MS By matching 3 3 3 1 0.97899 0.98516 11.409 10 Median 1.0088 0.97232 13.423 3 0 Median 1.1406 0.99816 13.803 3 0 Median 0.8625 0.94781 8.025 3 1 Median NaN NaN NaN 0 0 Median 1.0787 1.1326 NaN 1 0 Median NaN NaN NaN 0 0 Median 77801000 37660000 40142000 30405000 14730000 15674000 27626000 13056000 14571000 19113000 9524400 9588200 0 0 0 657730 349580 308150 0 0 0 23120 2881 24113 121823;121824;121825;121826;121827;121828;121829;121830;121831;121832 122946;122947;122948;122949;122950;122951;122952 122952 7 LTHYHEGLPTTR IRAPRKGWTLMHPGRLTHYHEGLPTTRGTR PGRLTHYHEGLPTTRGTRYIAVSFVDP___ R L T T R G 0 1 0 0 0 0 1 1 2 0 2 0 0 0 1 0 3 0 1 0 0 0 12 0 1423.7208 Q02809 Q02809 704 715 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2;3 1.5175E-06 98.368 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.168 1.0107 14.039 5 Median 0.88414 0.85952 NaN 1 0 Median 1.1807 1.0314 2.8683 2 0 Median 0.77095 0.82044 NaN 1 0 Median 1.3299 1.146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16801000 7557500 9243800 3253200 1739500 1513700 6750900 2721800 4029100 2922500 1499600 1422900 3874800 1596600 2278100 0 0 0 0 0 0 23121 2702 24114 121833;121834;121835;121836;121837 122953;122954;122955;122956;122957;122958;122959;122960 122957 8 LTIAEER GNKPWISLPRGKGIRLTIAEERDKRLAAKQ LPRGKGIRLTIAEERDKRLAAKQSSG____ R L T E R D 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 P62701;Q8TD47 P62701 246 252 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 4.0328E-08 134.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 2 2 1.2884 1.0775 11.201 12 Median 1.1377 1.0661 1.289 2 0 Median 1.1501 0.97378 5.9748 3 0 Median 1.2523 1.2004 15.102 2 0 Median 1.482 1.2278 NaN 1 1 Median 1.2968 1.3054 1.5502 2 2 Median 1.4012 1.1095 5.3831 2 0 Median 125470000 56297000 69172000 35201000 16731000 18470000 25598000 11831000 13767000 26303000 11886000 14417000 2703600 747900 1955700 29354000 12379000 16974000 6310200 2723400 3586800 23122 2593 24115 121838;121839;121840;121841;121842;121843;121844;121845;121846;121847;121848;121849 122961;122962;122963;122964;122965;122966;122967;122968;122969;122970;122971;122972;122973 122966 13 LTIAEERDK GNKPWISLPRGKGIRLTIAEERDKRLAAKQ RGKGIRLTIAEERDKRLAAKQSSG______ R L T D K R 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1073.5717 P62701;Q8TD47 P62701 246 254 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 0.071839 43.808 By matching By MS/MS 1 1 1.2342 1.192 0.59788 2 Median 1.2044 1.187 NaN 1 0 Median 1.2648 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1217700 567180 650520 814110 394590 419530 403580 172590 230990 0 0 0 0 0 0 0 0 0 0 0 0 23123 2593 24116 121850;121851 122974 122974 1 LTIAEERDKR GNKPWISLPRGKGIRLTIAEERDKRLAAKQ GKGIRLTIAEERDKRLAAKQSSG_______ R L T K R L 1 2 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 2 1229.6728 P62701;Q8TD47 P62701 246 255 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 3 0.032319 23.32 By MS/MS 1 1.0725 0.9933 NaN 1 Median NaN NaN NaN 0 0 Median 1.0725 0.9933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 402840 178510 224330 0 0 0 402840 178510 224330 0 0 0 0 0 0 0 0 0 0 0 0 23124 2593 24117 121852 122975 122975 1 LTIAFQAK EAEDGIIAYDDCGVKLTIAFQAKDVEGSTS YDDCGVKLTIAFQAKDVEGSTSPQIGDKVE K L T A K D 2 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 890.52255 O75534;E9PLT0 O75534 468 475 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.0062263 72.138 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2775 1.1377 27.854 4 Median 1.239 1.134 NaN 1 0 Median 1.1091 0.96909 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3172 1.1415 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1719 1.8435 NaN 1 0 Median 18877000 8075000 10802000 8348600 3479200 4869300 6279700 2783800 3495900 0 0 0 4036100 1738200 2297900 0 0 0 212970 73808 139160 23125 1684 24118 121853;121854;121855;121856 122976;122977;122978;122979 122976 4 LTIGSNLSIR VFKKIERHSIHWPCRLTIGSNLSIRIAAYK HWPCRLTIGSNLSIRIAAYKSILQERVKKT R L T I R I 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1072.6241 P13010 P13010 251 260 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0003619 116.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 2 1 1 1.0185 1.0215 20.979 13 Median 1.0597 1.0261 15.448 2 0 Median 1.2249 1.0787 12.719 4 0 Median 1.0185 1.0215 17.646 3 0 Plateau 0.93167 0.79213 53.088 2 0 Median 0.98085 1.0213 NaN 1 0 Median 1.1197 0.91171 NaN 1 0 Median 213320000 99205000 114120000 59513000 27204000 32309000 35984000 15387000 20596000 74711000 37905000 36806000 36090000 15400000 20690000 5488400 2641600 2846800 1534800 666120 868650 23126 1986 24119 121857;121858;121859;121860;121861;121862;121863;121864;121865;121866;121867;121868;121869 122980;122981;122982;122983;122984;122985;122986;122987;122988;122989;122990;122991;122992;122993;122994;122995;122996;122997 122989 18 LTIHAPPQELGPPVQR APQSPRRPPHPLPPRLTIHAPPQELGPPVQ TIHAPPQELGPPVQRIQMTRRQSVGRGLQL R L T Q R I 1 1 0 0 0 2 1 1 1 1 2 0 0 0 4 0 1 0 0 1 0 0 16 0 1751.9683 P12270 P12270 2085 2100 TPR Nucleoprotein TPR yes yes 3 4.6598E-06 72.615 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 0.48309 0.46557 5.9082 7 Median 0.4591 0.44886 7.3538 2 2 Median 0.54738 0.45614 NaN 1 1 Median 0.42474 0.45493 3.2688 2 0 Median 0.57059 0.50022 0.18448 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70017000 46434000 23583000 26137000 17544000 8593000 6401900 4112300 2289500 34652000 23054000 11599000 2826200 1724000 1102200 0 0 0 0 0 0 23127 1978 24120 121870;121871;121872;121873;121874;121875;121876 122998;122999;123000;123001;123002;123003;123004;123005;123006;123007;123008 122998 11 LTIHGDLYYEGK QKLHDAFFKWQTKPKLTIHGDLYYEGKEFE KPKLTIHGDLYYEGKEFETRLKEKKPGDLS K L T G K E 0 0 0 1 0 0 1 2 1 1 2 1 0 0 0 0 1 0 2 0 0 0 12 0 1407.7034 Q13435;E9PPJ0;H0YEX5 Q13435 584 595 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 1.9778E-06 120.55 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1.2324 1.141 40.169 8 Median NaN NaN NaN 0 0 Median 1.3531 1.1711 NaN 1 0 Median 1.1905 1.271 NaN 1 0 Median 1.3882 1.2149 14.872 2 0 Median 1.1519 1.1789 8.3177 2 0 Median 0.76019 0.64894 72.247 2 0 Median 49464000 21023000 28441000 0 0 0 1362800 536790 826030 13449000 5650400 7798700 14387000 6235500 8151400 18059000 7227100 10832000 2205700 1373300 832420 23128 2817 24121 121877;121878;121879;121880;121881;121882;121883;121884 123009;123010;123011;123012;123013;123014;123015 123015 7 LTIHGDLYYEGKEFETR QKLHDAFFKWQTKPKLTIHGDLYYEGKEFE IHGDLYYEGKEFETRLKEKKPGDLSDELRI K L T T R L 0 1 0 1 0 0 3 2 1 1 2 1 0 1 0 0 2 0 2 0 0 0 17 1 2070.0058 Q13435;E9PPJ0;H0YEX5 Q13435 584 600 SF3B2 Splicing factor 3B subunit 2 yes no 2;3;4 1.9814E-24 130.56 By MS/MS By MS/MS 4 1 0.99129 1.1238 19.01 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1373 1.2889 19.092 4 4 Median NaN NaN NaN 0 0 Median 0.96532 1.0617 NaN 1 0 Median NaN NaN NaN 0 0 Median 73170000 34119000 39051000 0 0 0 0 0 0 64679000 30209000 34470000 0 0 0 8490900 3909800 4581100 0 0 0 23129 2817 24122 121885;121886;121887;121888;121889 123016;123017;123018;123019;123020;123021 123019 6 LTILDQSEAPVR EYDSHLPWPFQGTIRLTILDQSEAPVRQNH TIRLTILDQSEAPVRQNHEEIMDAKPELLA R L T V R Q 1 1 0 1 0 1 1 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1340.73 Q9Y4K3 Q9Y4K3 432 443 TRAF6 TNF receptor-associated factor 6 yes yes 2 3.0678E-10 130.66 By MS/MS By MS/MS 1 1 2.0327 1.8788 44.27 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5787 2.5693 NaN 1 1 Median 1.6023 1.3738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20091000 5009000 15082000 0 0 0 0 0 0 16223000 3440000 12783000 3867700 1568900 2298800 0 0 0 0 0 0 23130 4445 24123 121890;121891 123022;123023 123022 2 LTILNDR SRSVLQPSQQKLAEKLTILNDRGVGMLTRL SQQKLAEKLTILNDRGVGMLTRLYNIKKAC K L T D R G 0 1 1 1 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 7 0 843.48142 Q9Y2A7;F8W050;P55160 Q9Y2A7 17 23 NCKAP1;NCKAP1L Nck-associated protein 1;Nck-associated protein 1-like yes no 2 0.027519 51.787 By MS/MS 1 1.2036 1.0246 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2036 1.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2348500 1030400 1318200 0 0 0 0 0 0 0 0 0 2348500 1030400 1318200 0 0 0 0 0 0 23131 4383 24124 121892 123024 123024 1 LTIQANLNR ANGRCLLAALTMDNRLTIQANLNRLQWVQL LTMDNRLTIQANLNRLQWVQLVDLTEIYGE R L T N R L 1 1 2 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1041.5931 Q9UKN8 Q9UKN8 191 199 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.00043262 128.57 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2594 1.1958 36.873 5 Median 1.2594 1.2054 NaN 1 0 Median 1.2793 1.1085 NaN 1 0 Median 0.73716 0.78822 58.948 2 0 Median 1.4085 1.2139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42870000 21502000 21369000 5107000 2334700 2772300 3882100 1806400 2075700 24962000 13514000 11448000 8919300 3846600 5072700 0 0 0 0 0 0 23132 4314 24125 121893;121894;121895;121896;121897 123025;123026;123027;123028;123029 123026 5 LTISSPLEAHK KQKLVYILNRDAAARLTISSPLEAHKANTL AAARLTISSPLEAHKANTLVYHVVGVDVGF R L T H K A 1 0 0 0 0 0 1 0 1 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1194.6608 Q15393 Q15393 152 162 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 0.0002018 84.687 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 6 5 2 0.83735 0.78272 42.608 10 Median 0.62852 0.6242 NaN 1 0 Median 0.95677 0.84217 1.8511 2 1 Median 0.57417 0.63955 73.733 3 1 Median 0.82973 0.7257 15.082 2 1 Median 0.88863 0.9214 27.456 2 0 Median NaN NaN NaN 0 0 Median 110140000 42105000 68036000 7601700 2541700 5060000 20347000 4974800 15372000 70755000 29777000 40978000 6125600 1280600 4845000 5312000 3530900 1781100 0 0 0 23133 2946 24126 121898;121899;121900;121901;121902;121903;121904;121905;121906;121907;121908;121909;121910;121911;121912;121913;121914;121915 123030;123031;123032;123033;123034;123035;123036;123037;123038;123039;123040;123041;123042;123043 123037 13 LTITFPAMVHR CKTGRSVVRKEHNSKLTITFPAMVHRTAGQ HNSKLTITFPAMVHRTAGQKDSEPLGIEEA K L T H R T 1 1 0 0 0 0 0 0 1 1 1 0 1 1 1 0 2 0 0 1 0 0 11 0 1284.7013 O95602;B9ZVN9 O95602 223 233 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 0.00047235 57.348 By matching By MS/MS 1 1 0.93672 0.92737 3.4215 2 Median NaN NaN NaN 0 0 Median 1.0752 0.95008 NaN 1 0 Median 0.81608 0.9052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3674200 1947900 1726300 0 0 0 434060 180450 253610 3240100 1767400 1472700 0 0 0 0 0 0 0 0 0 23134 1781 24127 121916;121917 123044;123045 123044 2 LTITSNPEMTFPGER GTDVGQTKAAQALAKLTITSNPEMTFPGER LTITSNPEMTFPGERIYEVVRPLVSLLHLN K L T E R I 0 1 1 0 0 0 2 1 0 1 1 0 1 1 2 1 3 0 0 0 0 0 15 0 1691.8189 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 855 869 UNC45A Protein unc-45 homolog A yes no 2 4.6482E-09 119.76 By MS/MS By matching By MS/MS 1 1 1 0.83537 0.80495 7.9807 3 Median 0.83537 0.80495 NaN 1 0 Median 0.86698 0.7522 NaN 1 0 Median 0.82393 0.88186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15585000 8406100 7179300 10678000 5722800 4955300 2495700 1217400 1278300 2411700 1465900 945790 0 0 0 0 0 0 0 0 0 23135 335 24128 121918;121919;121920 123046;123047;123048 123046 3 LTIVDTVGFGDQINK KARSYELQESNVRLKLTIVDTVGFGDQINK LTIVDTVGFGDQINKDDSYKPIVEYIDAQF K L T N K D 0 0 1 2 0 1 0 2 0 2 1 1 0 1 0 0 2 0 0 2 0 0 15 0 1618.8566 D6RGI3;D6RER5;Q9NVA2;D6RDU5;D6RDP1;D6R9Y6 D6RGI3 96 110 SEPT11 Septin-11 yes no 2 5.2839E-09 134.2 By MS/MS By matching 2 2 1.2049 1.1162 7.3094 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0598 1.0391 5.6904 2 0 Median 1.3278 1.1626 1.3295 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35764000 15906000 19859000 0 0 0 0 0 0 29569000 13250000 16319000 6195400 2655700 3539700 0 0 0 0 0 0 23136 822 24129 121921;121922;121923;121924 123049;123050;123051;123052 123052 4 LTIVNTVGFGDQINK KAQTYELQESNVQLKLTIVNTVGFGDQINK LTIVNTVGFGDQINKEESYQPIVDYIDAQF K L T N K E 0 0 2 1 0 1 0 2 0 2 1 1 0 1 0 0 2 0 0 2 0 0 15 0 1617.8726 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 121 135 SEPT10 Septin-10 yes no 2 1.1146E-09 106.29 By MS/MS By matching 2 1 0.96974 0.98074 7.839 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93396 0.93578 6.7888 2 0 Median 0.96974 0.84054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10623000 5596700 5026300 0 0 0 0 0 0 9783000 5216600 4566400 839980 380050 459930 0 0 0 0 0 0 23137 626 24130 121925;121926;121927 123053;123054 123053 2 LTKEDEQQQALQDIASR LTIQEVDEFLLRLSKLTKEDEQQQALQDIA KEDEQQQALQDIASRCTANDLKCIIRLIKH K L T S R C 2 1 0 2 0 4 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 17 1 1971.9861 P49916;K7ERZ5;K7EQB6 P49916 387 403 LIG3 DNA ligase 3 yes no 2;3 9.38E-14 160.69 By MS/MS By matching 2 1 0.89342 1.0101 15.591 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82885 0.93825 10.439 2 0 Median 1.2547 1.1902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58076000 30047000 28029000 0 0 0 0 0 0 56208000 29116000 27093000 1867500 931100 936370 0 0 0 0 0 0 23138 2406 24131 121928;121929;121930 123055;123056;123057;123058 123058 4 LTLAELNQILYR ADPILKIPFASLASRLTLAELNQILYRCES ASRLTLAELNQILYRCESEEKEDGGGCYDI R L T Y R C 1 1 1 0 0 1 1 0 0 1 4 0 0 0 0 0 1 0 1 0 0 0 12 0 1445.8242 P35573 P35573 899 910 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.00011282 90.629 By MS/MS By MS/MS By matching 1 3 1 1.2805 1.0974 3.9815 5 Median 1.0559 1.0333 NaN 1 0 Median 1.2885 1.1323 1.9013 3 0 Median 1.0058 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35717000 15741000 19976000 3310200 1587500 1722700 32105000 14004000 18101000 302600 149610 152980 0 0 0 0 0 0 0 0 0 23139 2243 24132 121931;121932;121933;121934;121935 123059;123060;123061;123062;123063 123060 5 LTLDDIER VLEQLQRDYERSLSRLTLDDIERLASRFLH YERSLSRLTLDDIERLASRFLHPEVTETME R L T E R L 0 1 0 2 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 973.50803 P11441;Q5HY81 P11441 130 137 UBL4A Ubiquitin-like protein 4A yes no 2 0.0034493 95.531 By MS/MS By MS/MS By MS/MS 1 1 1 1.178 1.053 12.058 2 Median 1.0048 0.96697 NaN 1 0 Median 1.381 1.1468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20933000 9947500 10986000 19024000 9088500 9935900 1908800 858950 1049900 0 0 0 0 0 0 0 0 0 0 0 0 23140 1965 24133 121936;121937;121938 123064;123065;123066;123067;123068 123065 5 LTLDKLDVK ______________________________ MSLSNKLTLDKLDVKGKRVVMRVDFNVPMK K L T V K G 0 0 0 2 0 0 0 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 9 1 1043.6227 P00558 P00558 7 15 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.0031092 106.6 By MS/MS By MS/MS By matching By MS/MS 4 3 1 2 1.2932 1.2547 13.123 10 Median 1.1479 1.0712 9.6794 4 0 Median 1.5096 1.3301 5.5861 3 0 Median 1.1693 1.2742 NaN 1 0 Median 1.4415 1.3257 9.6289 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 275000000 123080000 151920000 219010000 99143000 119870000 27478000 11480000 15998000 6608300 3199100 3409200 21904000 9258600 12645000 0 0 0 0 0 0 23141 1824 24134 121939;121940;121941;121942;121943;121944;121945;121946;121947;121948 123069;123070;123071;123072;123073;123074;123075 123071 7 LTLDTIFVPNTGK GTEISWENKLAEGLKLTLDTIFVPNTGKKS LKLTLDTIFVPNTGKKSGKLKASYKRDCFS K L T G K K 0 0 1 1 0 0 0 1 0 1 2 1 0 1 1 0 3 0 0 1 0 0 13 0 1417.7817 Q9Y277;E5RJN6;E5RHZ6;E5RFP6;E5RK27 Q9Y277 97 109 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 0.00030441 77.677 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 3 2 1 1.0841 1.0121 17.594 13 Median 0.88062 0.79792 8.4052 3 0 Median 1.3028 1.0969 0.71905 2 0 Median 1.1825 1.1333 11.893 2 1 Median 1.1737 0.96357 14.159 3 0 Median 1.1674 1.1738 11.828 2 0 Median 1.0306 0.85933 NaN 1 0 Median 80190000 41006000 39184000 54763000 29483000 25280000 9951600 4113100 5838500 4992900 2399100 2593800 3155200 1461000 1694200 5899400 2863600 3035800 1428200 685870 742300 23142 4377 24135 121949;121950;121951;121952;121953;121954;121955;121956;121957;121958;121959;121960;121961 123076;123077;123078;123079;123080;123081;123082;123083;123084;123085;123086;123087;123088 123077 13 LTLDTIFVPNTGKK GTEISWENKLAEGLKLTLDTIFVPNTGKKS KLTLDTIFVPNTGKKSGKLKASYKRDCFSV K L T K K S 0 0 1 1 0 0 0 1 0 1 2 2 0 1 1 0 3 0 0 1 0 0 14 1 1545.8766 Q9Y277;E5RJN6;E5RHZ6;E5RFP6;E5RK27 Q9Y277 97 110 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2;3 0.00016498 81.865 By MS/MS By matching By matching By MS/MS By matching 4 2 1 2 1 1.0076 1.0722 19.015 10 Median 0.88336 0.85596 1.7197 4 0 Linear 1.3989 1.2606 4.6113 2 0 Median NaN NaN NaN 0 0 Median 1.4926 1.3398 NaN 1 0 Median 1.0076 1.0722 3.4308 2 0 Median 1.2674 1.0999 NaN 1 0 Median 77403000 40029000 37374000 63956000 33406000 30550000 3092100 1539600 1552500 0 0 0 122120 48978 73139 9395000 4613500 4781500 837860 421270 416590 23143 4377 24136 121962;121963;121964;121965;121966;121967;121968;121969;121970;121971 123089;123090;123091;123092 123089 4 LTLEDLEDSWDR EYALKRQEAIAQNRRLTLEDLEDSWDRGIP NRRLTLEDLEDSWDRGIPRINTLFQKDRHT R L T D R G 0 1 0 3 0 0 2 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 12 0 1490.6889 Q6P2Q9;I3L3Z8 Q6P2Q9 1403 1414 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00039889 141.95 By MS/MS By matching 1 1 1.0477 1.0201 12.491 2 Median NaN NaN NaN 0 0 Median 1.3106 1.1143 NaN 1 0 Median 0.83749 0.93385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4152200 1753500 2398700 0 0 0 3422200 1354900 2067400 729940 398630 331310 0 0 0 0 0 0 0 0 0 23144 3157 24137 121972;121973 123093;123094 123094 2 LTLEQGQQLVAEGHPGASQASAR TALRGEMSGRLGPLKLTLEQGQQLVAEGHP LVAEGHPGASQASARAAELQAQWERLEALA K L T A R A 4 1 0 0 0 4 2 3 1 0 3 0 0 0 1 2 1 0 0 1 0 0 23 0 2347.188 O15020 O15020 699 721 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 4.9849E-16 66.853 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.98426 0.96855 15.554 4 Median 0.99846 0.93712 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70701 0.77072 NaN 1 0 Median 1.2723 1.116 NaN 1 0 Median 0.97026 1.001 NaN 1 1 Median NaN NaN NaN 0 0 Median 74817000 39567000 35250000 14225000 7137900 7087200 0 0 0 50463000 27567000 22896000 1565100 720290 844800 8563600 4141800 4421700 0 0 0 23145 1512 24138 121974;121975;121976;121977 123095;123096;123097;123098 123097 4 LTLFHIEQGK TTGHGESILKVNLARLTLFHIEQGKTVEEA VNLARLTLFHIEQGKTVEEAADLSLGYMKS R L T G K T 0 0 0 0 0 1 1 1 1 1 2 1 0 1 0 0 1 0 0 0 0 0 10 0 1184.6554 Q7L266 Q7L266 233 242 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes yes 2 0.0017172 101.72 By MS/MS By MS/MS 1 1 1.03 0.90999 5.1232 2 Median 0.92816 0.87761 NaN 1 1 Median 1.143 0.94356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9726800 4607600 5119200 4088200 2178800 1909400 5638600 2428800 3209800 0 0 0 0 0 0 0 0 0 0 0 0 23146 3220 24139 121978;121979 123099;123100 123100 1 LTLHGLQQYYVK FMQDPMEIFVDDETKLTLHGLQQYYVKLKD ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD K L T V K L 0 0 0 0 0 2 0 1 1 0 3 1 0 0 0 0 1 0 2 1 0 0 12 0 1461.798 H0Y400;O00148;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;H0YCC6 Q13838 257 268 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 1.0389E-06 151.83 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 3 11 10 4 6 1.2144 1.1371 17.295 38 Median 1.217 1.1258 19.931 4 2 Median 1.6917 1.4382 44.222 3 0 Plateau 1.1356 1.0789 12.454 11 0 Median 1.3274 1.1637 12.426 10 0 Median 1.0768 1.0631 18.183 4 0 Median 1.2576 1.0218 11.109 6 0 Median 1666200000 753200000 913020000 58448000 28295000 30152000 11522000 5244900 6277500 935020000 436880000 498140000 527590000 223270000 304320000 88733000 41558000 47175000 44908000 17954000 26954000 23147 2842;1441;1146 24140 121980;121981;121982;121983;121984;121985;121986;121987;121988;121989;121990;121991;121992;121993;121994;121995;121996;121997;121998;121999;122000;122001;122002;122003;122004;122005;122006;122007;122008;122009;122010;122011;122012;122013;122014;122015;122016;122017 123101;123102;123103;123104;123105;123106;123107;123108;123109;123110;123111;123112;123113;123114;123115;123116;123117;123118;123119;123120;123121;123122;123123;123124;123125;123126;123127;123128;123129;123130;123131;123132;123133;123134;123135;123136 123130 36 LTLHLESVR L T V R 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 1066.6135 REV__P10721 yes yes 2 0.025538 37.558 By MS/MS By MS/MS 1 1 1.1013 1.09 15.595 2 Median 1.287 1.2171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94235 0.9762 NaN 1 0 Median NaN NaN NaN 0 0 Median 2597700000 1230500000 1367200000 25055000 11222000 13833000 0 0 0 0 0 0 0 0 0 2572600000 1219300000 1353300000 0 0 0 + 23148 4535 24141 122018;122019 123137;123138 123138 2 LTLIDPETLLPR AEEGTRNVVAECLGKLTLIDPETLLPRLKG LGKLTLIDPETLLPRLKGYLISGSSYARSS K L T P R L 0 1 0 1 0 0 1 0 0 1 4 0 0 0 2 0 2 0 0 0 0 0 12 0 1379.8024 Q86VP6;A0A0C4DGH5 Q86VP6 958 969 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 3.327E-06 128.27 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 3 2 3 0.83192 0.77644 26.82 13 Median 0.74865 0.72227 NaN 1 0 Median 0.91062 0.77924 6.7486 4 0 Median 0.72002 0.79185 54.604 3 0 Median 0.88855 0.7438 11.986 2 0 Median NaN NaN NaN 0 0 Median 0.82771 0.6915 15.536 3 0 Median 35329000 18897000 16432000 8195500 4760300 3435200 15670000 8200400 7469200 9022600 4671400 4351200 1131400 583450 547920 0 0 0 1309900 681270 628680 23149 3288 24142 122020;122021;122022;122023;122024;122025;122026;122027;122028;122029;122030;122031;122032 123139;123140;123141;123142;123143;123144;123145;123146;123147;123148;123149;123150 123148 12 LTLLAQQK DQSYVISFVVPNQKRLTLLAQQKGVEGTWV VVPNQKRLTLLAQQKGVEGTWVDICNNPAM R L T Q K G 1 0 0 0 0 2 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 913.55967 O60488 O60488 623 630 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes yes 2 0.014501 50.966 By MS/MS By matching 1 1 1.1953 1.1068 12.118 2 Median 1.035 1.0159 NaN 1 0 Median 1.3805 1.2058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3231200 1458500 1772700 2279700 1046400 1233300 951500 412080 539430 0 0 0 0 0 0 0 0 0 0 0 0 23150 1615 24143 122033;122034 123151 123151 1 LTLLHYDPVVK TGFCFNTKRNRLREKLTLLHYDPVVKQRVL LREKLTLLHYDPVVKQRVLFVEKKKIRSL_ K L T V K Q 0 0 0 1 0 0 0 0 1 0 3 1 0 0 1 0 1 0 1 2 0 0 11 0 1296.7442 O75394 O75394 41 51 MRPL33 39S ribosomal protein L33, mitochondrial yes yes 2;3 0.0001236 120.12 By MS/MS By matching By matching By matching 2 1 1 1 1.0212 0.92715 34.279 5 Median 0.80376 0.73087 33.64 2 0 Median 1.2936 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6317 1.4115 NaN 1 0 Median 0.75035 0.75622 NaN 1 0 Median NaN NaN NaN 0 0 Median 33891000 17994000 15897000 26090000 14238000 11852000 161050 75203 85846 0 0 0 6092200 2815200 3277000 1548100 865940 682120 0 0 0 23151 1668 24144 122035;122036;122037;122038;122039 123152;123153;123154;123155 123155 4 LTLLNPK AYIADLDAKSGASLKLTLLNPKGRIWTMVA AKSGASLKLTLLNPKGRIWTMVAGGGASVV K L T P K G 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 7 0 797.50109 P53396 P53396 266 272 ACLY ATP-citrate synthase yes yes 2 0.0079902 94.163 By MS/MS By MS/MS 1 1 1.6893 1.5475 6.6948 2 Median 1.6381 1.6225 NaN 1 1 Median 1.7422 1.4759 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12045000 2376000 9669100 2806500 700980 2105500 9238500 1675000 7563500 0 0 0 0 0 0 0 0 0 0 0 0 23152 2467 24145 122040;122041 123156;123157;123158 123156 3 LTLLQLK EMESNPDSPYWHQVRLTLLQLKGLEDSYEG SPYWHQVRLTLLQLKGLEDSYEGRVSFPAG R L T L K G 0 0 0 0 0 1 0 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 7 0 827.54804 Q8NHP8 Q8NHP8 184 190 PLBD2 Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form yes yes 2 0.016513 68.398 By MS/MS By matching 3 3 1.4565 1.3358 28.375 6 Median 1.1928 1.1686 31.913 3 0 Median 1.8017 1.5268 31.521 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10181000 4177300 6003400 8529300 3606200 4923100 1651300 571030 1080300 0 0 0 0 0 0 0 0 0 0 0 0 23153 3445 24146 122042;122043;122044;122045;122046;122047 123159;123160 123159 2 LTLLQVASR QNQQLLRENEIIKQKLTLLQVASRQKHLPK EIIKQKLTLLQVASRQKHLPKDTLLSPDSS K L T S R Q 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 999.60768 O95239 O95239 994 1002 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.00044632 126.62 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1825 1.0216 28.196 6 Median NaN NaN NaN 0 0 Median 1.1871 1.0414 NaN 1 0 Median 1.1874 1.3054 NaN 1 0 Median 1.1388 0.98655 2.2087 2 0 Median 0.55986 0.58649 NaN 1 0 Median 1.3803 1.2206 NaN 1 0 Median 23113000 10548000 12565000 0 0 0 306120 113400 192720 17360000 7901000 9459200 3889900 1823000 2066900 1397000 631350 765620 159720 79151 80569 23154 1757 24147 122048;122049;122050;122051;122052;122053 123161;123162;123163;123164;123165;123166 123162 6 LTLPHSIR MVVLWKIPSKELRVRLTLPHSIRSDSEDIC SKELRVRLTLPHSIRSDSEDICLFTKDEPN R L T I R S 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 935.55525 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 82 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.0023887 116.88 By MS/MS By MS/MS By MS/MS 1 5 3 1.0114 0.99493 5.276 9 Median NaN NaN NaN 0 0 Median 1.0675 0.92486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9919 0.99493 3.3481 5 0 Median 1.1629 0.99655 8.0035 3 0 Median 105430000 50441000 54984000 0 0 0 4529700 1812800 2716900 0 0 0 0 0 0 64563000 31936000 32626000 36333000 16691000 19641000 23155 1716 24148 122054;122055;122056;122057;122058;122059;122060;122061;122062 123167;123168;123169;123170;123171;123172;123173;123174;123175;123176;123177;123178;123179;123180 123170 14 LTLQPKPVVGHFSAR MPEQNPTHALPESPRLTLQPKPVVGHFSAR LTLQPKPVVGHFSARELDGDRSKQLALKVL R L T A R E 1 1 0 0 0 1 0 1 1 0 2 1 0 1 2 1 1 0 0 2 0 0 15 1 1648.9413 A0A494BYR6;Q86Y91 A0A494BYR6 504 518 KIF18B Kinesin-like protein KIF18B yes no 3 0.039845 15.238 By MS/MS 1 0.68832 0.78334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68832 0.78334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1801800 1176600 625210 0 0 0 0 0 0 1801800 1176600 625210 0 0 0 0 0 0 0 0 0 23156 450 24149 122063 123181 123181 1 LTLSALLDGK LIGLGYTQTLKPGIKLTLSALLDGKNVNAG KPGIKLTLSALLDGKNVNAGGHKLGLGLEF K L T G K N 1 0 0 1 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 0 0 0 10 0 1029.607 P21796 P21796 257 266 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.0003619 90.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 3 3 2 8 1.3318 1.1572 12.424 31 Median 1.0939 1.0787 8.2975 7 0 Median 1.4888 1.2778 12.889 8 0 Median 1.4057 1.3532 19.972 3 0 Plateau 1.3797 1.1633 2.6755 3 0 Median 1.4267 1.4396 0.63427 2 0 Median 1.3032 1.0581 7.8064 8 0 Median 1036300000 416480000 619840000 101320000 45762000 55562000 645050000 247300000 397750000 16699000 6895000 9803500 3538300 1464700 2073600 7291100 3145800 4145300 262410000 111910000 150500000 23157 2092 24150 122064;122065;122066;122067;122068;122069;122070;122071;122072;122073;122074;122075;122076;122077;122078;122079;122080;122081;122082;122083;122084;122085;122086;122087;122088;122089;122090;122091;122092;122093;122094 123182;123183;123184;123185;123186;123187;123188;123189;123190;123191;123192;123193;123194;123195;123196;123197;123198;123199;123200;123201;123202;123203;123204 123188 23 LTLSALLDGKNVNAGGHK LIGLGYTQTLKPGIKLTLSALLDGKNVNAG SALLDGKNVNAGGHKLGLGLEFQA______ K L T H K L 2 0 2 1 0 0 0 3 1 0 4 2 0 0 0 1 1 0 0 1 0 0 18 1 1806.9952 P21796 P21796 257 274 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 3;4 7.2891E-05 43.454 By MS/MS 3 1.1654 1.1314 12.119 3 Median 1.1654 1.1314 12.119 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25433000 12472000 12961000 25433000 12472000 12961000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23158 2092 24151 122095;122096;122097 123205;123206;123207;123208 123207 4 LTLSALVDGK LIGVGYTQTLRPGVKLTLSALVDGKSINAG RPGVKLTLSALVDGKSINAG__________ K L T G K S 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1015.5914 A0A0A0MR02;P45880 A0A0A0MR02 268 277 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.00036244 111.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 1 2 1 7 1.2951 1.1787 39.753 26 Median 1.1594 1.0951 11.334 8 1 Median 1.5471 1.3359 17.526 7 0 Median 1.2821 1.2334 NaN 1 0 Median 1.5143 1.2866 12.059 2 0 Median 1.4455 1.4256 NaN 1 0 Median 1.2708 1.0582 68.897 7 1 Median 283240000 142470000 140760000 148200000 68340000 79860000 65803000 25401000 40402000 9410500 4122300 5288200 2296400 948110 1348300 1060000 381830 678210 56465000 43282000 13183000 23159 151 24152 122098;122099;122100;122101;122102;122103;122104;122105;122106;122107;122108;122109;122110;122111;122112;122113;122114;122115;122116;122117;122118;122119;122120;122121;122122;122123 123209;123210;123211;123212;123213;123214;123215;123216;123217;123218;123219;123220;123221;123222;123223;123224 123210 16 LTLSMRPDDKYHEK LQEKVKQYFKNNQHKLTLSMRPDDKYHEKQ KLTLSMRPDDKYHEKQAQVEATKLKQKVEA K L T E K Q 0 1 0 2 0 0 1 0 1 0 2 2 1 0 1 1 1 0 1 0 0 0 14 2 1731.8614 Q5JRX3;A0A0A0MRX9;H0Y4F7 Q5JRX3 500 513 PITRM1 Presequence protease, mitochondrial yes no 3 0.0062509 27.969 By matching By MS/MS 1 1 0.89298 0.9476 27.692 2 Median 0.68542 0.77909 NaN 1 0 Median 1.1634 1.1526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10312000 4880600 5431100 5669200 2990100 2679100 4642600 1890500 2752100 0 0 0 0 0 0 0 0 0 0 0 0 23160 3050 24153 122124;122125 123225 123225 1 LTLSQFQK QVCFDDDGTSSPQDRLTLSQFQKQLLEDYG TSSPQDRLTLSQFQKQLLEDYGESHFTVNQ R L T Q K Q 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 8 0 963.53893 Q8N1F7;H3BVG0 Q8N1F7 435 442 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0072153 81.784 By MS/MS 1 1.2686 1.3633 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2686 1.3633 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43975000 20052000 23922000 0 0 0 0 0 0 43975000 20052000 23922000 0 0 0 0 0 0 0 0 0 23161 3356 24154 122126 123226 123226 1 LTLTFNR AMDNASKNASEMIDKLTLTFNRTRQAVITK NASEMIDKLTLTFNRTRQAVITKELIEIIS K L T N R T 0 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 7 0 863.4865 P36542 P36542 271 277 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 0.00034642 144.29 By MS/MS By MS/MS By matching 1 1 1 1.3392 1.1747 13.727 3 Median 1.0686 0.99796 NaN 1 0 Median 1.4125 1.1747 NaN 1 0 Median 1.3392 1.311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70298000 32431000 37867000 54130000 26033000 28097000 13894000 5520700 8373300 2274100 877140 1396900 0 0 0 0 0 0 0 0 0 23162 2257 24155 122127;122128;122129 123227;123228;123229;123230 123227 4 LTLTGAQVR AGGSKPLTFQIQGNKLTLTGAQVRQLAVGQ QIQGNKLTLTGAQVRQLAVGQPRPLQRNVV K L T V R Q 1 1 0 0 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 9 0 957.56073 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 1216 1224 SRCAP Helicase SRCAP yes no 2 0.022094 61.962 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23163 3199 24156 122130 123231 123231 1 LTLTSDESTLIEDGGAR FYSSIRTSNNSQVNKLTLTSDESTLIEDGG LTSDESTLIEDGGARSDGSLEDGDDVHRAV K L T A R S 1 1 0 2 0 0 2 2 0 1 3 0 0 0 0 2 3 0 0 0 0 0 17 0 1776.8741 Q9NRX5 Q9NRX5 344 360 SERINC1 Serine incorporator 1 yes yes 2 1.4173E-10 83.314 By MS/MS 1 14.392 13.507 NaN 1 Median 14.392 13.507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18246000 1363900 16882000 18246000 1363900 16882000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23164 4093 24157 122131 123232 123232 1 LTLYDIAHTPGVAADLSHIETK QPLSLLLKNSPLVSRLTLYDIAHTPGVAAD HTPGVAADLSHIETKAAVKGYLGPEQLPDC R L T T K A 3 0 0 2 0 0 1 1 2 2 3 1 0 0 1 1 3 0 1 1 0 0 22 0 2364.2325 P40926 P40926 53 74 MDH2 Malate dehydrogenase, mitochondrial yes yes 2;3;4 6.3346E-26 125.73 By MS/MS By matching By MS/MS By matching By matching 4 3 1 1 1 0.94728 0.86815 61.2 10 Median 0.92365 0.84544 7.9891 4 0 Median 1.2939 1.0811 118.97 3 0 Plateau 0.89104 0.85634 NaN 1 0 Median 1.2359 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0769 0.94058 NaN 1 0 Median 191870000 91172000 100700000 107000000 54047000 52950000 76195000 32306000 43889000 7206100 4170600 3035500 936220 407220 529000 0 0 0 540650 241220 299430 23165 2292 24158 122132;122133;122134;122135;122136;122137;122138;122139;122140;122141 123233;123234;123235;123236;123237;123238;123239 123237 7 LTMELTGDSMEVKPIMTR IAELEEKKKMIENEKLTMELTGDSMEVKPI ELTGDSMEVKPIMTRKLRRRPNDPVPIPDK K L T T R K 0 1 0 1 0 0 2 1 0 1 2 1 3 0 1 1 3 0 0 1 0 0 18 1 2051.0101 Q9H7L9 Q9H7L9 166 183 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 3 2.1602E-06 59.872 By MS/MS By matching 1 1 0.80429 0.79793 25.818 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94668 0.95775 NaN 1 0 Median 0.68331 0.66479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4005800 2055400 1950500 0 0 0 0 0 0 3747800 1936600 1811200 258040 118790 139250 0 0 0 0 0 0 23166 3982 24159 122142;122143 123240 123240 1 LTMLDIASNR HNGIEVIEGLENNNKLTMLDIASNRIKKIE ENNNKLTMLDIASNRIKKIENISHLTELQE K L T N R I 1 1 1 1 0 0 0 0 0 1 2 0 1 0 0 1 1 0 0 0 0 0 10 0 1132.591 H7C003;Q15435;C9J177;C9JD73 H7C003 251 260 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.00058327 95.502 By MS/MS 2 0.97346 0.97095 7.738 2 Median 0.97346 0.97095 7.738 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26722000 13471000 13251000 26722000 13471000 13251000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23167 1254 24160 122144;122145 123241;123242 123242 2 LTMQITALNENLGTVKK EKEVGMKKHEENEAKLTMQITALNENLGTV MQITALNENLGTVKKEWQSSQRRVSELEKQ K L T K K E 1 0 2 0 0 1 1 1 0 1 3 2 1 0 0 0 3 0 0 1 0 0 17 1 1873.0343 Q15075 Q15075 1239 1255 EEA1 Early endosome antigen 1 yes yes 3 0.051871 9.0964 By MS/MS By matching 1 1 0.87119 0.82205 2.2909 2 Median 0.83535 0.80884 NaN 1 0 Median 0.90857 0.83548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10273000 5373700 4899600 9925900 5206100 4719800 347370 167590 179790 0 0 0 0 0 0 0 0 0 0 0 0 23168 2926 24161 122146;122147 123243 123243 1 LTMQNLNDR GVLTASDGLLAGNEKLTMQNLNDRLASYLD LAGNEKLTMQNLNDRLASYLDKVRALEAAN K L T D R L 0 1 2 1 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 9 0 1103.5393 CON__P08727;P08727;C9JM50 CON__P08727 82 90 KRT19 Keratin, type I cytoskeletal 19 yes no 2 2.8853E-13 152.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 1.4473 1.2411 69.427 5 Median 0.98603 0.98588 NaN 1 1 Median 1.6054 1.3976 NaN 1 1 Median 1.0139 1.1175 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1731 2.5901 104.04 2 1 Median 321560000 89185000 232370000 22483000 11010000 11472000 35646000 12234000 23412000 121550000 47924000 73627000 0 0 0 0 0 0 141880000 18017000 123860000 + 23169 752 24162 122148;122149;122150;122151;122152;122153;122154;122155;122156 123244;123245;123246;123247;123248;123249;123250;123251;123252 123249 9 LTMQVSSLQR SLIVEGKREKKKVERLTMQVSSLQREPFTI KKVERLTMQVSSLQREPFTIAQGKGQKLCE R L T Q R E 0 1 0 0 0 2 0 0 0 0 2 0 1 0 0 2 1 0 0 1 0 0 10 0 1161.6176 H0Y993;P35659;A0A494C028;H0Y8X0;A0A494C198;D6R9L5 H0Y993 66 75 DEK Protein DEK yes no 2 8.3038E-66 241.94 By MS/MS By MS/MS By MS/MS By MS/MS 6 11 2 5 1.2058 1.0044 13.65 24 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99071 0.95 7.4881 6 1 Median 1.2818 1.0993 12.614 11 1 Median 0.8515 0.8462 23.228 2 0 Median 1.2158 0.97807 2.8817 5 1 Median 1490000000 714250000 775770000 0 0 0 0 0 0 830240000 416710000 413530000 561780000 251840000 309940000 42065000 21010000 21055000 55933000 24692000 31241000 23170 1166 24163;24164 122157;122158;122159;122160;122161;122162;122163;122164;122165;122166;122167;122168;122169;122170;122171;122172;122173;122174;122175;122176;122177;122178;122179;122180 123253;123254;123255;123256;123257;123258;123259;123260;123261;123262;123263;123264;123265;123266;123267;123268;123269;123270;123271;123272;123273;123274;123275;123276;123277;123278;123279;123280;123281;123282;123283;123284;123285;123286;123287;123288;123289;123290;123291;123292 123269 388 40 LTMVPPNIAELK FTLSHITQLVLSHNKLTMVPPNIAELKNLE HNKLTMVPPNIAELKNLEVLNFFNNQIEEL K L T L K N 1 0 1 0 0 0 1 0 0 1 2 1 1 0 2 0 1 0 0 1 0 0 12 0 1324.7425 Q15404 Q15404 52 63 RSU1 Ras suppressor protein 1 yes yes 2 0.0011531 56.432 By matching By MS/MS By matching By matching By matching 1 1 2 1 2 0.86697 0.73909 25.835 7 Median 0.71048 0.67576 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80516 0.76246 NaN 1 0 Median 0.89435 0.73871 0.071909 2 0 Median 1.2979 1.3336 NaN 1 0 Median 0.99228 0.81934 31.538 2 0 Median 12887000 7081100 5806300 5415100 3184400 2230800 0 0 0 4446800 2403300 2043600 1091800 559910 531890 1192600 592760 599860 741010 340830 400180 23171 2949 24165 122181;122182;122183;122184;122185;122186;122187 123293;123294 123294 2 LTNAEGVEFK INKDQNVFDSKKKVKLTNAEGVEFKLSKKQ KKKVKLTNAEGVEFKLSKKQLQAIEFNKAL K L T F K L 1 0 1 0 0 0 2 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1106.5608 O76094 O76094 288 297 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.00067788 97.635 By MS/MS 2 1.0343 0.96717 0.67419 2 Median 1.0343 0.96717 0.67419 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11009000 5418300 5591000 11009000 5418300 5591000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23172 1721 24166 122188;122189 123295;123296 123295 2 LTNELKEEQEMNK SVERKCTQLNTKVAKLTNELKEEQEMNKCL AKLTNELKEEQEMNKCLRANQVLLQNKLKE K L T N K C 0 0 2 0 0 1 4 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 13 1 1604.7716 J3KNN7;Q7Z569 J3KNN7 453 465 BRAP BRCA1-associated protein yes no 3 0.070138 12.383 By matching By MS/MS 1 1 0.92132 0.94155 6.7752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79349 0.8975 NaN 1 0 Median 1.0697 0.98775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4610100 2588600 2021500 0 0 0 0 0 0 3391600 2084900 1306700 1218500 503690 714820 0 0 0 0 0 0 23173 1305 24167 122190;122191 123297 123297 1 LTNFPEMMNR WGFKALKQMIKINFKLTNFPEMMNRYKQLL KINFKLTNFPEMMNRYKQLLTYIRSAVTRN K L T N R Y 0 1 2 0 0 0 1 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 10 0 1251.574 P61201;H0YKU5 P61201 82 91 COPS2 COP9 signalosome complex subunit 2 yes no 2 0.00040727 76.827 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.99707 0.89636 6.3985 4 Median 0.90566 0.86402 NaN 1 0 Median 0.99479 0.86774 NaN 1 0 Median 0.99935 0.98961 NaN 1 0 Median 1.0651 0.92593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25066000 12917000 12149000 12007000 6713700 5293800 858650 427280 431370 8518100 3947600 4570600 3681500 1828400 1853200 0 0 0 0 0 0 23174 2548 24168 122192;122193;122194;122195 123298;123299;123300;123301 123299 4 LTNLQDELQESEQK RSNKEHENNTDVLGKLTNLQDELQESEQKY KLTNLQDELQESEQKYNADRKKWLEEKMML K L T Q K Y 0 0 1 1 0 3 3 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1673.8108 Q96Q89 Q96Q89 1441 1454 KIF20B Kinesin-like protein KIF20B yes yes 2 4.0449E-07 107.03 By MS/MS 1 1.0766 1.1973 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0766 1.1973 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6496800 2805000 3691900 0 0 0 0 0 0 6496800 2805000 3691900 0 0 0 0 0 0 0 0 0 23175 3717 24169 122196 123302 123302 1 LTNLQDELQESEQKYNADR RSNKEHENNTDVLGKLTNLQDELQESEQKY QDELQESEQKYNADRKKWLEEKMMLITQAK K L T D R K 1 1 2 2 0 3 3 0 0 0 3 1 0 0 0 1 1 0 1 0 0 0 19 1 2293.0822 Q96Q89 Q96Q89 1441 1459 KIF20B Kinesin-like protein KIF20B yes yes 3 1.2548E-06 51.348 By MS/MS 1 0.96081 1.1523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96081 1.1523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5232900 2323700 2909300 0 0 0 0 0 0 5232900 2323700 2909300 0 0 0 0 0 0 0 0 0 23176 3717 24170 122197 123303 123303 1 LTNLQEGIIPK QLLQLTNLEHDVYERLTNLQEGIIPKKKAA VYERLTNLQEGIIPKKKAATDDDLHRINEL R L T P K K 0 0 1 0 0 1 1 1 0 2 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1224.7078 A0A2R8YDB8;H7BXF5;Q9H0E3 A0A2R8YDB8 978 988 SAP130 Histone deacetylase complex subunit SAP130 yes no 2 0.00020438 74.464 By MS/MS By matching 1 2 1.096 0.91818 31.573 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7107 0.764 NaN 1 0 Median 1.3234 1.1391 30.494 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8167500 4570900 3596600 0 0 0 0 0 0 6986800 4034800 2952000 1180700 536110 644610 0 0 0 0 0 0 23177 395 24171 122198;122199;122200 123304;123305 123305 2 LTNLQENLSEVSQVK KASSITRELQGRELKLTNLQENLSEVSQVK LTNLQENLSEVSQVKETLEKELQILKEKFA K L T V K E 0 0 2 0 0 2 2 0 0 0 3 1 0 0 0 2 1 0 0 2 0 0 15 0 1700.8945 J3KP58;P30622;F5H6A0;A0A3B3ITA2 J3KP58 710 724 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 4.0821E-06 88.441 By MS/MS By matching 1 2 0.85616 0.78708 4.9256 3 Median 0.85464 0.82191 NaN 1 0 Median 0.86473 0.76574 3.8881 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5783700 3080800 2702800 4357300 2303000 2054300 1426300 777810 648530 0 0 0 0 0 0 0 0 0 0 0 0 23178 1308 24172 122201;122202;122203 123306 123306 1 LTNQELLR KKVQKSLQETIQSLKLTNQELLRKGSSNNQ ETIQSLKLTNQELLRKGSSNNQDVVTCDMA K L T L R K 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 8 0 985.55564 Q6NUQ4;H7C008;H7C085;H7BZI0 Q6NUQ4 445 452 TMEM214 Transmembrane protein 214 yes no 2 0.00077933 150.84 By MS/MS By MS/MS 1 2 0.93864 0.866 13.191 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93864 0.95854 NaN 1 0 Median 0.86617 0.79937 11.322 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10388000 5143000 5244900 0 0 0 0 0 0 8854300 4396200 4458000 1533600 746730 786880 0 0 0 0 0 0 23179 3145 24173 122204;122205;122206 123307;123308;123309 123307 3 LTNSMMMHGR AAKRFRKAQCPIVERLTNSMMMHGRNNGKK PIVERLTNSMMMHGRNNGKKLMTVRIVKHA R L T G R N 0 1 1 0 0 0 0 1 1 0 1 0 3 0 0 1 1 0 0 0 0 0 10 0 1176.5202 M0R0F0;M0R0R2;P46782 M0R0F0 72 81 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00043215 110.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1.1874 1.1217 11.074 7 Median 1.1808 1.1217 NaN 1 0 Median 1.2423 1.0409 11.546 2 0 Median 1.1874 1.1408 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.205 1.2413 16.318 2 0 Median 1.3254 1.076 NaN 1 0 Median 56536000 24713000 31823000 23075000 10433000 12642000 9201900 3903600 5298300 11603000 5103400 6499600 0 0 0 11204000 4694100 6510300 1451900 579140 872770 23180 1425 24174 122207;122208;122209;122210;122211;122212;122213 123310;123311;123312;123313;123314;123315;123316;123317;123318;123319;123320;123321 123311 12 LTNVAATSGDGYR MDGVISDHECQELQRLTNVAATSGDGYRGQ QRLTNVAATSGDGYRGQTSPHTPNEKFYGV R L T Y R G 2 1 1 1 0 0 0 2 0 0 1 0 0 0 0 1 2 0 1 1 0 0 13 0 1323.6419 Q32P28;H7C2W6 Q32P28 489 501 LEPRE1 Prolyl 3-hydroxylase 1 yes no 2 7.9643E-07 116.77 By MS/MS By MS/MS By MS/MS 1 1 1 1.0569 1.0344 9.2836 3 Median 1.0569 1.0354 NaN 1 0 Median 1.0183 0.88118 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2004 1.0344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10585000 4491100 6093900 2648100 984370 1663700 5354800 2419000 2935800 0 0 0 2582100 1087700 1494300 0 0 0 0 0 0 23181 3007 24175 122214;122215;122216 123322;123323;123324;123325;123326;123327 123326 6 LTNVAVVR ______________________________ TPTNQIRLTNVAVVRMKRAGKRFEIACYKN R L T V R M 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 8 0 870.5287 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 12 19 SBDS Ribosome maturation protein SBDS yes no 2 0.0025796 128.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 3 1 1 1.1039 0.95756 15.299 12 Median 1.1322 1.0751 7.5938 2 0 Median 1.0263 0.87864 4.2349 2 0 Median 1.1662 1.1203 11.615 3 0 Plateau 1.1354 0.92332 6.2546 3 0 Median 1.1941 1.1629 NaN 1 0 Median 0.87612 0.71004 NaN 1 0 Median 36548000 16049000 20499000 6003600 2686000 3317700 2116100 935960 1180100 18204000 7727200 10477000 8630700 3924300 4706300 1021600 481510 540070 571780 293570 278210 23182 100 24176 122217;122218;122219;122220;122221;122222;122223;122224;122225;122226;122227;122228 123328;123329;123330;123331;123332;123333;123334;123335;123336;123337;123338;123339 123338 12 LTPDPYR RLGQDPYRLGHDPYRLTPDPYRMSPRPYRI RLGHDPYRLTPDPYRMSPRPYRIAPRSYRI R L T Y R M 0 1 0 1 0 0 0 0 0 0 1 0 0 0 2 0 1 0 1 0 0 0 7 0 860.43922 P18583 P18583 958 964 SON Protein SON yes yes 2 0.013989 75.311 By MS/MS By MS/MS 1 1 0.82499 0.76882 6.6837 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77058 0.80602 NaN 1 0 Median 0.88325 0.73333 NaN 1 0 Median 8567200 5119700 3447500 0 0 0 0 0 0 0 0 0 0 0 0 4833600 3104800 1728800 3733600 2014900 1718600 23183 2058 24177 122229;122230 123340;123341;123342 123340 3 LTPEDFAR IDPALFNTISQGDVRLTPEDFARAQKYCKY ISQGDVRLTPEDFARAQKYCKYAGSALQYE R L T A R A 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 8 0 947.47125 Q9NP79;A0A087WY55;Q5TGM0 Q9NP79 264 271 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 2 0.011256 65.038 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0725 0.93959 9.1665 4 Median 0.87982 0.87166 NaN 1 1 Median 1.0959 0.9133 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0971 0.96664 NaN 1 0 Median 1.0496 1.0782 NaN 1 0 Median NaN NaN NaN 0 0 Median 19716000 10246000 9470500 5641300 2944900 2696400 5151600 2762100 2389500 0 0 0 1705800 793860 911940 7217500 3744800 3472700 0 0 0 23184 76 24178 122231;122232;122233;122234 123343;123344;123345;123346;123347 123344 5 LTPEEEEILNK ESHYALPLGRKKGAKLTPEEEEILNKKRSK KGAKLTPEEEEILNKKRSKKIQKKYDERKK K L T N K K 0 0 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1313.6715 Q5JR95;P62241 Q5JR95 109 119 RPS8 40S ribosomal protein S8 yes no 2 2.1134E-05 125.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 4 0.85779 0.82635 11.947 11 Median 0.79957 0.7672 11.939 2 1 Median 0.85779 0.70786 NaN 1 1 Median 0.8995 0.84395 NaN 1 0 Median 0.83316 0.6911 NaN 1 1 Median 0.86339 0.83921 8.0569 2 0 Median 1.0272 0.85917 15.843 4 0 Median 668690000 357870000 310820000 408660000 228520000 180140000 107480000 55447000 52032000 58683000 28852000 29831000 9127400 4833500 4293900 7149500 3545600 3604000 77588000 36667000 40921000 23185 2573 24179 122235;122236;122237;122238;122239;122240;122241;122242;122243;122244;122245;122246 123348;123349;123350;123351;123352;123353;123354;123355;123356;123357;123358;123359;123360;123361 123356 14 LTPEEEEILNKK ESHYALPLGRKKGAKLTPEEEEILNKKRSK GAKLTPEEEEILNKKRSKKIQKKYDERKKN K L T K K R 0 0 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 12 1 1441.7664 Q5JR95;P62241 Q5JR95 109 120 RPS8 40S ribosomal protein S8 yes no 3 2.6402E-06 97.911 By MS/MS By MS/MS By MS/MS 1 2 1 0.93174 0.88664 10.073 4 Median 0.89056 0.90478 NaN 1 0 Median 0.93174 0.83665 5.3456 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1811 1.0251 NaN 1 0 Median 31578000 16334000 15244000 16532000 8783100 7749100 10709000 5306800 5402000 0 0 0 0 0 0 0 0 0 4336800 2244200 2092700 23186 2573 24180 122247;122248;122249;122250 123362;123363;123364;123365;123366 123362 5 LTPEEEEILNKKR ESHYALPLGRKKGAKLTPEEEEILNKKRSK AKLTPEEEEILNKKRSKKIQKKYDERKKNA K L T K R S 0 1 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 13 2 1597.8675 Q5JR95;P62241 Q5JR95 109 121 RPS8 40S ribosomal protein S8 yes no 3;4 9.0749E-07 105.65 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 1.0692 0.98633 46.972 10 Median 0.46416 0.49965 99.167 2 1 Median 1.0122 0.87764 11.419 3 2 Median NaN NaN NaN 0 0 Median 1.1708 0.96571 5.2519 3 2 Median 1.0912 1.2883 8.171 2 0 Median NaN NaN NaN 0 0 Median 100720000 52396000 48323000 26057000 16267000 9789400 56953000 27858000 29095000 0 0 0 11438000 5116300 6322000 6270500 3154300 3116300 0 0 0 23187 2573 24181 122251;122252;122253;122254;122255;122256;122257;122258;122259;122260 123367;123368;123369;123370;123371;123372;123373;123374;123375;123376;123377;123378;123379;123380 123373 14 LTPEEKNDVSENNR LKTLKEIRNAFDLFKLTPEEKNDVSENNRK KLTPEEKNDVSENNRKREEIPLDFKTIDDH K L T N R K 0 1 3 1 0 0 3 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 14 1 1643.7751 Q99549;A0A0A0MT47 Q99549 453 466 MPHOSPH8 M-phase phosphoprotein 8 yes no 3 0.026983 30.961 By MS/MS 1 0.74217 0.8239 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74217 0.8239 NaN 1 1 Median NaN NaN NaN 0 0 Median 1457400 779900 677510 0 0 0 0 0 0 0 0 0 0 0 0 1457400 779900 677510 0 0 0 23188 3752 24182 122261 123381 123381 1 LTPEELER REISFQLSAPHEDARLTPEELERASLLQIL APHEDARLTPEELERASLLQILPEMLGAER R L T E R A 0 1 0 0 0 0 3 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 0 985.50803 Q5H8X8;O95399 Q5H8X8 42 49 UTS2 Urotensin-2 yes no 2 0.0011492 147.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 0.93608 0.87944 8.9798 8 Median 0.91581 0.86503 4.6617 2 0 Median 1.0806 0.93257 1.961 2 1 Median 0.841 0.84612 NaN 1 1 Median 0.92777 0.78852 13.109 2 1 Median 0.92645 0.94537 NaN 1 0 Median NaN NaN NaN 0 0 Median 256020000 126720000 129300000 79795000 40373000 39422000 117090000 54914000 62179000 39683000 21757000 17926000 9264600 4491100 4773500 10187000 5183700 5003000 0 0 0 23189 1770 24183 122262;122263;122264;122265;122266;122267;122268;122269 123382;123383;123384;123385;123386;123387;123388;123389;123390;123391;123392;123393;123394;123395;123396;123397;123398;123399 123395 18 LTPEEMMDSSTFKR KKKEKQKKRKAYEPKLTPEEMMDSSTFKRF KLTPEEMMDSSTFKRFTASIENILDNLEDM K L T K R F 0 1 0 1 0 0 2 0 0 0 1 1 2 1 1 2 2 0 0 0 0 0 14 1 1670.7644 A0A590UJS4;Q6KC79 A0A590UJS4 1188 1201 NIPBL Nipped-B-like protein yes no 3 0.00043698 46.408 By MS/MS By MS/MS 2 1 0.83993 0.9495 11.204 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76724 0.90119 15.26 2 0 Median NaN NaN NaN 0 0 Median 0.83993 0.9495 NaN 1 0 Median NaN NaN NaN 0 0 Median 11085000 5934800 5150100 0 0 0 0 0 0 6929300 3897700 3031700 0 0 0 4155600 2037100 2118500 0 0 0 23190 488 24184 122270;122271;122272 123400;123401;123402 123400 3 LTPEFSQR YNKSLAEGYFDAAGRLTPEFSQRLTNKIRE YFDAAGRLTPEFSQRLTNKIRELLQQMERG R L T Q R L 0 1 0 0 0 1 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 8 0 976.49779 O43813;E9PHS0;F8WDS9 O43813 28 35 LANCL1 LanC-like protein 1 yes no 2 0.026169 42.109 By matching By MS/MS 1 1 1.0655 1.1064 13.813 2 Median 1.2287 1.22 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92393 1.0035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7288600 3268300 4020300 4623500 2032400 2591100 0 0 0 2665100 1235900 1429200 0 0 0 0 0 0 0 0 0 23191 936 24185 122273;122274 123403 123403 1 LTPEQLHSMR GEAPFAQRIDPTREKLTPEQLHSMRQAELA PTREKLTPEQLHSMRQAELAQWQKVLPRRR K L T M R Q 0 1 0 0 0 1 1 0 1 0 2 0 1 0 1 1 1 0 0 0 0 0 10 0 1210.6128 Q9Y2R0;K7EPV0 Q9Y2R0 30 39 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes no 2;3 4.9183E-05 129.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1 1.8422 1.5708 20.309 9 Median 1.3408 1.2984 4.2092 2 0 Median 2.0573 1.7487 12.181 3 0 Median 1.7345 1.7582 26.979 2 0 Median 2.3138 1.8264 NaN 1 0 Median 1.1462 1.2172 NaN 1 0 Median NaN NaN NaN 0 0 Median 126860000 50648000 76212000 77154000 32251000 44903000 38731000 13919000 24812000 8220400 3130000 5090400 837640 247830 589810 1917200 1100700 816490 0 0 0 23192 4388 24186 122275;122276;122277;122278;122279;122280;122281;122282;122283 123404;123405;123406;123407;123408;123409;123410;123411;123412;123413;123414;123415;123416 123414 13 LTPETLTR FILPDEGKMQDLEAKLTPETLTRWRSSLQP MQDLEAKLTPETLTRWRSSLQPRLIHRLRL K L T T R W 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 3 0 0 0 0 0 8 0 929.5182 CON__A2I7N3;CON__A2I7N1;CON__REFSEQ:XP_001252647;CON__Q9TTE1 CON__A2I7N3 287 294 no no 2 0.0055981 97.798 By MS/MS By MS/MS 3 2 0.16955 0.16683 125.91 4 Median 0.16955 0.16683 43.595 2 1 Median 0.26612 0.22637 211.5 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17036000 11112000 5924000 3960900 3354600 606340 13075000 7757500 5317600 0 0 0 0 0 0 0 0 0 0 0 0 + 23193 733;796;794 24187 122284;122285;122286;122287;122288 123417;123418;123419;123420;123421 123417 5 LTPEYLELKK EYYAAHKYATSNKHKLTPEYLELKKYQAIA SNKHKLTPEYLELKKYQAIASNSKIYFGSN K L T K K Y 0 0 0 0 0 0 2 0 0 0 3 2 0 0 1 0 1 0 1 0 0 0 10 1 1232.7016 O75477 O75477 278 287 ERLIN1 Erlin-1 yes yes 3 0.011796 39.917 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23194 1675 24188 122289 123422 123422 1 LTPEYLQLMK ECYTAMKIAEANKLKLTPEYLQLMKYKAIA ANKLKLTPEYLQLMKYKAIASNSKIYFGKD K L T M K Y 0 0 0 0 0 1 1 0 0 0 3 1 1 0 1 0 1 0 1 0 0 0 10 0 1234.6631 O94905;E5RHW4 O94905 276 285 ERLIN2 Erlin-2 yes no 2 0.0016737 63.419 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.82207 0.82365 53.144 4 Median 0.78187 0.72271 NaN 1 0 Median 1.2728 1.0869 NaN 1 0 Median 0.86433 0.93868 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.32112 0.32975 NaN 1 0 Median NaN NaN NaN 0 0 Median 26244000 13695000 12548000 15660000 8499900 7160100 6702600 3025600 3677000 2933000 1497300 1435700 0 0 0 947970 672270 275710 0 0 0 23195 848 24189 122290;122291;122292;122293 123423;123424;123425 123423 3 LTPFLDPR DYRITDFGEFMRENRLTPFLDPRYKIDGSL EFMRENRLTPFLDPRYKIDGSLEVPLERAK R L T P R Y 0 1 0 1 0 0 0 0 0 0 2 0 0 1 2 0 1 0 0 0 0 0 8 0 957.52837 Q9NVM9 Q9NVM9 427 434 ASUN Protein asunder homolog yes yes 2 0.049701 34.808 By MS/MS By matching 1 1 0.76307 0.712 1.3581 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68145 0.71887 NaN 1 0 Median 0.85447 0.7052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3909700 2224000 1685700 0 0 0 0 0 0 3777300 2161300 1616000 132400 62642 69757 0 0 0 0 0 0 23196 4136 24190 122294;122295 123426 123426 1 LTPIDRVFTR VMAQMGCYVPAEVCRLTPIDRVFTRLGASD AEVCRLTPIDRVFTRLGASDRIMSGESTFF R L T T R L 0 2 0 1 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 10 1 1216.6928 P52701;A0A494C0M1;A0A087WYT6 P52701 1167 1176 MSH6 DNA mismatch repair protein Msh6 yes no 3 0.036704 21.993 By MS/MS 1 0.84534 0.94333 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84534 0.94333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5251400 2568000 2683400 0 0 0 0 0 0 5251400 2568000 2683400 0 0 0 0 0 0 0 0 0 23197 2453 24191 122296 123427 123427 1 LTPITYPQGLAMAK LRDDKDTIEKLKEKKLTPITYPQGLAMAKE KLTPITYPQGLAMAKEIGAVKYLECSALTQ K L T A K E 2 0 0 0 0 1 0 1 0 1 2 1 1 0 2 0 2 0 1 0 0 0 14 0 1502.8167 P63000 P63000 134 147 RAC1 Ras-related C3 botulinum toxin substrate 1 yes yes 2 2.4374E-07 113.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 1 3 2 0.78764 0.73537 25.888 15 Median 0.73106 0.68856 6.2171 4 0 Median 0.93025 0.80382 25.349 3 0 Median 0.78412 0.73537 1.0634 3 2 Median 0.91384 0.75521 NaN 1 0 Median 1.0987 1.1744 53.722 2 1 Median 0.79984 0.64292 11.661 2 0 Median 275700000 150700000 125000000 144110000 80784000 63328000 8511900 4514000 3997800 105520000 58544000 46980000 1232400 639450 592970 15360000 5710000 9649700 963220 510350 452880 23198 2615 24192;24193 122297;122298;122299;122300;122301;122302;122303;122304;122305;122306;122307;122308;122309;122310;122311;122312 123428;123429;123430;123431;123432;123433;123434;123435;123436;123437;123438;123439;123440;123441;123442;123443;123444;123445 123440 1279 18 LTPLELK VLEKIRWNDGLDQYRLTPLELKQKCKEMNA NDGLDQYRLTPLELKQKCKEMNADAVFAFQ R L T L K Q 0 0 0 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 7 0 812.50076 O95340 O95340 388 394 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.028199 50.966 By matching By MS/MS 1 1 1.1719 1.0613 24.365 2 Median 1.3107 1.2608 NaN 1 0 Median 1.0478 0.8933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7468700 3649400 3819400 3176200 1543200 1632900 4292600 2106100 2186500 0 0 0 0 0 0 0 0 0 0 0 0 23199 1765 24194 122313;122314 123446;123447 123446 2 LTPLGYHLASLPVDVR KIRLRDLGALTPDERLTPLGYHLASLPVDV TPLGYHLASLPVDVRIGKLMLFGSIFRCLD R L T V R I 1 1 0 1 0 0 0 1 1 0 4 0 0 0 2 1 1 0 1 2 0 0 16 0 1749.9778 Q6P158;H7C109 Q6P158 1052 1067 DHX57 Putative ATP-dependent RNA helicase DHX57 yes no 3 0.0023307 28.58 By MS/MS 2 0.73206 0.73312 23.415 2 Median 0.73206 0.73312 23.415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2988900 1612600 1376400 2988900 1612600 1376400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23200 3148 24195 122315;122316 123448;123449 123449 2 LTPLILKPFGNSISR HQADIKEARREVEVKLTPLILKPFGNSISR LTPLILKPFGNSISRYNGEPEHIERNDAPH K L T S R Y 0 1 1 0 0 0 0 1 0 2 3 1 0 1 2 2 1 0 0 0 0 0 15 1 1654.977 Q14739;A0A494C1L1;C9JXK0 Q14739 117 131 LBR Lamin-B receptor yes no 2;3 7.3714E-07 135.66 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 4 6 2 3 2 0.85109 0.85131 13.524 21 Median 0.8758 0.90139 11.436 4 0 Median 0.92042 0.87807 13.756 4 0 Median 0.65562 0.75099 5.5717 6 0 Median 1.0216 0.90432 5.6406 2 0 Median 0.71899 0.7599 7.1293 3 0 Median 1.0836 0.98567 9.2985 2 0 Median 175150000 101090000 74061000 62948000 34679000 28269000 5516400 2747500 2768900 95607000 57344000 38263000 695420 333840 361580 9338400 5453900 3884500 1042400 528280 514110 23201 2897 24196 122317;122318;122319;122320;122321;122322;122323;122324;122325;122326;122327;122328;122329;122330;122331;122332;122333;122334;122335;122336;122337 123450;123451;123452;123453;123454;123455;123456;123457;123458;123459;123460;123461;123462;123463;123464;123465;123466;123467;123468 123453 19 LTPLLSVR SHGEVLEWQKTFEEKLTPLLSVRESLSEEE QKTFEEKLTPLLSVRESLSEEEAQKMGRKD K L T V R E 0 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 1 0 0 1 0 0 8 0 897.56475 Q9BXP5;H7C3A1 Q9BXP5 670 677 SRRT Serrate RNA effector molecule homolog yes no 2 0.0064162 71.342 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 3 2 1.0174 0.98769 10.861 13 Median 1.1124 1.0752 NaN 1 0 Median 1.0642 0.91475 4.1139 2 0 Median 0.93174 0.98798 9.9106 3 0 Median 1.1872 1.0008 1.8611 2 0 Median 0.96746 1.0026 14.824 3 0 Median 1.0344 0.84473 7.3216 2 0 Median 59396000 28631000 30765000 6136500 2905700 3230800 6135300 2526000 3609200 29672000 14828000 14844000 4823500 2096300 2727300 10117000 4993700 5123100 2512100 1281400 1230700 23202 3879 24197 122338;122339;122340;122341;122342;122343;122344;122345;122346;122347;122348;122349;122350 123469;123470;123471;123472;123473;123474;123475;123476;123477;123478 123474 10 LTPLPEDNSMNVDQDGDPSDR IITNRCFFLSKIEEKLTPLPEDNSMNVDQD DNSMNVDQDGDPSDRMEVQEQEEDISSLIR K L T D R M 0 1 2 5 0 1 1 1 0 0 2 0 1 0 3 2 1 0 0 1 0 0 21 0 2314.0019 P78527 P78527 3197 3217 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.9324E-26 148.72 By MS/MS By matching By MS/MS By MS/MS By matching 3 4 5 5 1 0.74973 0.71602 29.619 18 Median 0.61585 0.61537 4.9291 3 0 Median 1.15 1.0095 15.754 4 0 Median 0.51104 0.54873 25.122 5 0 Median 0.93707 0.81635 7.011 5 0 Median 0.65184 0.68264 NaN 1 0 Median NaN NaN NaN 0 0 Median 150180000 89768000 60415000 46010000 27678000 18332000 8109900 3601400 4508500 82654000 51402000 31252000 11368000 5848000 5520200 2041800 1238600 803190 0 0 0 23203 2647 24198;24199 122351;122352;122353;122354;122355;122356;122357;122358;122359;122360;122361;122362;122363;122364;122365;122366;122367;122368 123479;123480;123481;123482;123483;123484;123485;123486;123487;123488;123489;123490;123491;123492 123480 1323 14 LTPLQLEIQR QKSQLQRLLQELRRRLTPLQLEIQRVVEKA ELRRRLTPLQLEIQRVVEKADSWVEKEEPA R L T Q R V 0 1 0 0 0 2 1 0 0 1 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1209.7081 Q8N163;H0YB24;G3V119 Q8N163 896 905 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.00047649 99.442 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 0.96378 0.90167 4.2405 7 Median 0.96378 0.92878 NaN 1 0 Median 1.1054 0.92643 NaN 1 0 Median 0.81654 0.88409 5.1119 2 0 Median 1.0586 0.90167 NaN 1 0 Median 0.7793 0.83223 NaN 1 0 Median 1.0769 0.89707 NaN 1 0 Median 41130000 21141000 19989000 10093000 4918700 5174500 8486600 4039300 4447300 19299000 10712000 8587200 1800100 854240 945830 1367300 577910 789370 84297 39408 44889 23204 3354 24200 122369;122370;122371;122372;122373;122374;122375 123493;123494;123495;123496;123497;123498;123499 123495 7 LTPLSHEVISR PHLSRQDLTTLDVTKLTPLSHEVISRQATI DVTKLTPLSHEVISRQATINIGTIGHVAHG K L T S R Q 0 1 0 0 0 0 1 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 11 0 1250.6983 P41091;Q2VIR3;H7BZU1 P41091 28 38 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3 4.7299E-05 108.35 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 6 1.0929 0.9424 30.908 17 Median 0.96997 0.91855 62.486 3 1 Median 1.0205 0.8581 19.262 3 1 Median 1.1063 1.0968 14.389 6 0 Median 1.0961 0.93503 10.272 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 477870000 228450000 249420000 46615000 21779000 24836000 44396000 22178000 22218000 108410000 50154000 58253000 278450000 134340000 144110000 0 0 0 0 0 0 23205 2295 24201 122376;122377;122378;122379;122380;122381;122382;122383;122384;122385;122386;122387;122388;122389;122390;122391;122392;122393;122394 123500;123501;123502;123503;123504;123505;123506;123507;123508;123509;123510;123511;123512;123513;123514;123515;123516;123517;123518;123519;123520;123521;123522;123523;123524 123508 25 LTPMEALLQTR CASLLTAVSRQLQDRLTPMEALLQTRYGLY LQDRLTPMEALLQTRYGLYSSPFDPVLFDL R L T T R Y 1 1 0 0 0 1 1 0 0 0 3 0 1 0 1 0 2 0 0 0 0 0 11 0 1271.6908 A0A3B3IUB9;Q9NR09 Q9NR09 1485 1495 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.0003569 71.349 By MS/MS By matching By matching 1 1 1 0.82138 0.7697 23.998 3 Median 0.77421 0.7697 NaN 1 0 Median 0.82138 0.69691 NaN 1 0 Median 0.98761 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9512400 5273700 4238700 6629000 3599700 3029200 2390100 1452500 937670 493290 221460 271830 0 0 0 0 0 0 0 0 0 23206 4073;445 24202 122395;122396;122397 123525;123526 123526 2 LTPQHDQIQTQPLGK AGTSLPSVDLLQKLRLTPQHDQIQTQPLGK LTPQHDQIQTQPLGKGAMVASFSPAAGQLA R L T G K G 0 0 0 1 0 4 0 1 1 1 2 1 0 0 2 0 2 0 0 0 0 0 15 0 1702.9002 Q9NPI6 Q9NPI6 400 414 DCP1A mRNA-decapping enzyme 1A yes yes 3 0.011891 23.831 By MS/MS By matching 1 1 0.65921 0.61616 20.68 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5222 0.53234 NaN 1 0 Median 0.83218 0.71319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11094000 7591500 3502800 0 0 0 0 0 0 9874500 6979600 2894900 1219900 611920 607930 0 0 0 0 0 0 23207 4054 24203 122398;122399 123527 123527 1 LTPQMFNQLMK KTQELFRKVRSILNKLTPQMFNQLMKQVSG ILNKLTPQMFNQLMKQVSGLTVDTEERLKG K L T M K Q 0 0 1 0 0 2 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 0 11 0 1349.6836 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 954 964 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.00016565 91.318 By MS/MS By matching 1 1 2.5976 2.3785 150.45 2 Median 0.84821 0.82089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7.955 6.8915 NaN 1 0 Median 10628000 5213800 5413900 10406000 5170400 5235900 0 0 0 0 0 0 0 0 0 0 0 0 221450 43397 178050 23208 300 24204 122400;122401 123528;123529 123529 2 LTPQMFQQLMK KTQDLFRRVRSILNKLTPQMFQQLMKQVTQ ILNKLTPQMFQQLMKQVTQLAIDTEERLKG K L T M K Q 0 0 0 0 0 3 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 0 11 0 1363.6992 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 608 618 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 8.8248E-05 92.439 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1 1.0811 0.99342 28.906 7 Median 1.0595 1.0253 4.4739 2 0 Median 1.0086 0.87665 9.6464 2 0 Median NaN NaN NaN 0 0 Median 1.3212 1.1884 42.077 2 0 Median 1.6186 1.6973 NaN 1 0 Median NaN NaN NaN 0 0 Median 64249000 29670000 34578000 46103000 21371000 24732000 11951000 5884100 6067000 0 0 0 1401100 692940 708160 4793700 1722700 3071000 0 0 0 23209 894 24205 122402;122403;122404;122405;122406;122407;122408;122409 123530;123531;123532;123533;123534;123535;123536;123537;123538 123534 9 LTPRPTAAELEEVLQVNSLIQTQK LEDVPSGRLHLRLERLTPRPTAAELEEVLQ LEEVLQVNSLIQTQKSAELAAALLSIYMER R L T Q K S 2 1 1 0 0 3 3 0 0 1 4 1 0 0 2 1 3 0 0 2 0 0 24 1 2677.465 Q9BSJ8 Q9BSJ8 768 791 ESYT1 Extended synaptotagmin-1 yes yes 3 0.011141 19.113 By MS/MS By matching 1 1 0.74449 0.74368 10.269 2 Median 0.66428 0.69159 NaN 1 0 Median 0.83438 0.79969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7515100 4273600 3241500 6752400 3897100 2855300 762720 376510 386210 0 0 0 0 0 0 0 0 0 0 0 0 23210 3816 24206 122410;122411 123539;123540 123540 2 LTPSGYEWGR TCSFTPGSCTLTAYKLTPSGYEWGRQNTDK LTAYKLTPSGYEWGRQNTDKGNNPKGYLPS K L T G R Q 0 1 0 0 0 0 1 2 0 0 1 0 0 0 1 1 1 1 1 0 0 0 10 0 1164.5564 Q6P2Q9 Q6P2Q9 2230 2239 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00036108 88.948 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 3 2 0.67512 0.62483 42.11 9 Median 0.57666 0.54129 NaN 1 1 Median 0.67512 0.57639 NaN 1 1 Median 0.57319 0.62483 NaN 1 0 Median 0.73712 0.63464 67.197 2 1 Median 0.54803 0.5488 42.962 2 1 Median 1.2802 1.0449 47.888 2 0 Median 102780000 65609000 37168000 10814000 6870100 3943500 6881700 4252300 2629400 45251000 26897000 18354000 12454000 8323700 4129800 25901000 18612000 7289400 1476900 654250 822610 23211 3157 24207 122412;122413;122414;122415;122416;122417;122418;122419;122420;122421 123541;123542;123543;123544;123545;123546;123547;123548 123542 8 LTPTELK VLDRVYWNDGLDQYRLTPTELKQKFKDMNA NDGLDQYRLTPTELKQKFKDMNADAVFAFQ R L T L K Q 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 7 0 800.46437 O43252 O43252 398 404 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.022334 73.616 By MS/MS 1 1.1595 0.99681 NaN 1 Median NaN NaN NaN 0 0 Median 1.1595 0.99681 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3193800 1415800 1778100 0 0 0 3193800 1415800 1778100 0 0 0 0 0 0 0 0 0 0 0 0 23212 1561 24208 122422 123549 123549 1 LTPTHGEMR NGVGKSTLLLLLTGKLTPTHGEMRKNHRLK LLLTGKLTPTHGEMRKNHRLKIGFFNQQYA K L T M R K 0 1 0 0 0 0 1 1 1 0 1 0 1 0 1 0 2 0 0 0 0 0 9 0 1040.5073 Q8NE71;H0YGW7 Q8NE71 675 683 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.016483 42.599 By MS/MS By matching By matching 1 1 1 1.0267 0.98528 11.888 3 Median NaN NaN NaN 0 0 Median 1.1132 0.98528 NaN 1 0 Median 1.0267 1.0542 NaN 1 0 Median 0.95188 0.83655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1057600 483430 574190 0 0 0 651160 289160 362000 173650 80886 92759 232820 113390 119430 0 0 0 0 0 0 23213 3427 24209 122423;122424;122425 123550;123551 123551 2 LTPTMMLYAGR NQSAIDAAAEKPSVRLTPTMMLYAGRSQDG PSVRLTPTMMLYAGRSQDGSHLLKSARYLQ R L T G R S 1 1 0 0 0 0 0 1 0 0 2 0 2 0 1 0 2 0 1 0 0 0 11 0 1252.6308 O14874;H3BTL2;H3BS02;H3BNP3 O14874 70 80 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes no 2 0.01596 55.567 By MS/MS 1 1.0063 1.0959 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0063 1.0959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9894100 4541100 5353100 0 0 0 0 0 0 9894100 4541100 5353100 0 0 0 0 0 0 0 0 0 23214 1499 24210 122426 123552 123552 1 LTPTSVLDYFGTGSVQR EENTKTKNKPLSPIKLTPTSVLDYFGTGSV PTSVLDYFGTGSVQRSNKKMVASKRKELSQ K L T Q R S 0 1 0 1 0 1 0 2 0 0 2 0 0 1 1 2 3 0 1 2 0 0 17 0 1839.9367 P35251;A0A1W2PP02 P35251 160 176 RFC1 Replication factor C subunit 1 yes no 2 0.0046142 31.228 By MS/MS By matching By matching 1 1 1 0.9418 0.94879 48.963 3 Median 0.9418 0.94879 NaN 1 0 Median 1.1074 0.98014 NaN 1 0 Median 0.33972 0.41317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4011400 2466700 1544600 1113800 611450 502370 694830 314170 380650 2202700 1541100 661610 0 0 0 0 0 0 0 0 0 23215 2239 24211 122427;122428;122429 123553 123553 1 LTPVLLAK EKIKTTVKESATEEKLTPVLLAKQLAALKQ ESATEEKLTPVLLAKQLAALKQQLVASHLE K L T A K Q 1 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 8 0 853.56369 Q13561;H0YI98;F8W1I6;F8VW18;F8VX93 Q13561 133 140 DCTN2 Dynactin subunit 2 yes no 2 0.0079765 64.803 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 0.94764 0.86224 20.673 6 Median 0.92532 0.86072 NaN 1 0 Median 1.0472 0.9117 7.6372 2 0 Median 0.80368 0.78216 NaN 1 0 Median 1.1681 1.0499 NaN 1 0 Median 0.5997 0.57845 NaN 1 0 Median NaN NaN NaN 0 0 Median 34595000 16918000 17677000 10271000 5166200 5104700 4929700 2250000 2679600 8074900 4130000 3944900 10410000 4823500 5586200 909770 548000 361770 0 0 0 23216 2824 24212 122430;122431;122432;122433;122434;122435 123554;123555;123556;123557;123558;123559 123556 6 LTPVPDSFFAK GDARNKRQRNPRYEKLTPVPDSFFAKHLQT RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ K L T A K H 1 0 0 1 0 0 0 0 0 0 1 1 0 2 2 1 1 0 0 1 0 0 11 0 1220.6441 O94906 O94906 179 189 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0048509 47.198 By MS/MS By MS/MS By MS/MS 2 1 1 0.73002 0.75049 26.585 4 Median 0.61067 0.59004 32.152 2 0 Median NaN NaN NaN 0 0 Median 0.70012 0.76046 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83604 0.86333 NaN 1 0 Median NaN NaN NaN 0 0 Median 25889000 14568000 11321000 6674700 3633200 3041500 0 0 0 16693000 9301500 7391100 0 0 0 2521600 1633100 888490 0 0 0 23217 1735 24213 122436;122437;122438;122439 123560;123561;123562;123563;123564;123565 123565 6 LTPVRPAAASPIVSGAR TIPITKPHTMKPAPRLTPVRPAAASPIVSG PVRPAAASPIVSGARRRRVRCRKCKACVQG R L T A R R 4 2 0 0 0 0 0 1 0 1 1 0 0 0 3 2 1 0 0 2 0 0 17 1 1661.9577 I3VM54;Q9Y2K7 I3VM54 532 548 KDM2A Lysine-specific demethylase 2A yes no 3 6.9236E-06 65.943 By MS/MS By MS/MS By MS/MS By matching 2 2 4 4 0.59461 0.6771 18.769 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70015 0.81567 18.594 2 0 Median 0.76185 0.70958 1.5612 2 0 Median 0.58626 0.63559 9.7282 4 1 Median 0.58205 0.50753 17.62 4 0 Median 48662000 28270000 20393000 0 0 0 0 0 0 22690000 13311000 9379300 4530500 2421900 2108500 16570000 10038000 6531300 4871900 2498200 2373700 23218 1296 24214 122440;122441;122442;122443;122444;122445;122446;122447;122448;122449;122450;122451 123566;123567;123568;123569;123570 123567 5 LTPYADQLQTK LQATVNQRVEELKGRLTPYADQLQTKIEEN LKGRLTPYADQLQTKIEENVEELRRSLAPY R L T T K I 1 0 0 1 0 2 0 0 0 0 2 1 0 0 1 0 2 0 1 0 0 0 11 0 1276.6663 CON__Q32PJ2 CON__Q32PJ2 201 211 yes yes 2 0.00091145 85.377 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5762300 5762300 0 0 0 0 0 0 0 0 0 0 0 0 0 5762300 5762300 0 0 0 0 + 23219 775 24215 122452;122453 123571;123572 123571 2 LTPYEVDELR KFEKNFYVEHPEVARLTPYEVDELRRKKEI PEVARLTPYEVDELRRKKEITVRGGDVCPK R L T L R R 0 1 0 1 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 1 0 0 10 0 1233.6241 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 144 153 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.00039083 92.062 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.82597 0.78416 13.768 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71893 0.7333 11.486 2 0 Median 0.95231 0.80909 16.838 2 0 Median 0.76054 0.77313 NaN 1 0 Median 1.1907 0.96883 NaN 1 0 Median 104960000 55622000 49342000 0 0 0 0 0 0 81630000 43472000 38158000 8565000 4812500 3752500 12728000 6443500 6284300 2041200 893840 1147400 23220 343 24216 122454;122455;122456;122457;122458;122459 123573;123574;123575;123576;123577;123578;123579;123580;123581;123582 123573 10 LTPYEVDELRR KFEKNFYVEHPEVARLTPYEVDELRRKKEI EVARLTPYEVDELRRKKEITVRGGDVCPKP R L T R R K 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 1 0 0 11 1 1389.7252 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 144 154 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 6.6678E-08 166.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 9 5 5 5 0.9453 0.91474 22.922 31 Median 0.9907 0.98333 10.433 3 2 Plateau 1.0483 0.99373 8.38 4 0 Median 0.75242 0.81277 28.765 9 3 Median 1.0897 1.0153 24.144 5 2 Median 0.90386 0.98206 20.366 5 3 Median 1.1032 0.97538 11.083 5 1 Median 1278800000 675310000 603510000 57540000 30064000 27477000 27273000 12722000 14552000 751880000 410570000 341310000 74337000 33239000 41098000 311150000 161270000 149880000 56637000 27448000 29189000 23221 343 24217 122460;122461;122462;122463;122464;122465;122466;122467;122468;122469;122470;122471;122472;122473;122474;122475;122476;122477;122478;122479;122480;122481;122482;122483;122484;122485;122486;122487;122488;122489;122490 123583;123584;123585;123586;123587;123588;123589;123590;123591;123592;123593;123594;123595;123596;123597;123598;123599;123600;123601;123602;123603;123604;123605;123606;123607;123608;123609;123610;123611;123612;123613;123614;123615;123616;123617;123618;123619;123620;123621;123622;123623 123610 41 LTQAQIFDYGEIPNFPR VAIICGSGLGGLTDKLTQAQIFDYGEIPNF QAQIFDYGEIPNFPRSTVPGHAGRLVFGFL K L T P R S 1 1 1 1 0 2 1 1 0 2 1 0 0 2 2 0 1 0 1 0 0 0 17 0 2008.0054 P00491;G3V5M2;G3V2H3 P00491 42 58 PNP Purine nucleoside phosphorylase yes no 2 1.6911E-05 78.096 By MS/MS 2 0.73446 0.68985 2.1679 2 Median 0.73446 0.68985 2.1679 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6165400 3589900 2575500 6165400 3589900 2575500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23222 1821 24218 122491;122492 123624;123625 123625 2 LTQDEIISK NMSTMVYIKEDKLEKLTQDEIISKTKQVIQ EDKLEKLTQDEIISKTKQVIQGLEALKNEH K L T S K T 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 9 0 1045.5655 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;G3V2P7 G5E9S8 19 27 KLC1 Kinesin light chain 1 yes no 2 0.0011587 84.615 By MS/MS By MS/MS By matching 1 1 1 1.0725 0.91368 12.484 3 Median 1.1776 1.1301 NaN 1 0 Median 1.0725 0.90717 NaN 1 0 Median 0.77896 0.91368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11677000 5167500 6509800 4369000 1935400 2433700 5886400 2599900 3286400 1421900 632190 789740 0 0 0 0 0 0 0 0 0 23223 896 24219 122493;122494;122495 123626;123627;123628;123629 123628 4 LTQDQDVDVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE PILEKLTQDQDVDVKYFAQEALTVLSLA__ K L T V K Y 0 0 0 3 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1159.5721 P30153;B3KQV6;E9PH38 P30153 567 576 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 1.4897E-05 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 3 3 1.0916 0.94504 15.177 18 Median 0.9596 0.914 12.922 4 0 Median 1.0686 0.88762 14.039 3 0 Median 0.96606 0.93308 20.412 2 0 Median 1.0787 0.93729 2.8895 3 0 Plateau 1.4108 1.3447 18.318 3 0 Plateau 1.3301 1.1183 6.933 3 0 Median 189510000 87268000 102240000 83027000 39474000 43554000 67532000 30442000 37090000 15929000 7776000 8152800 9877400 4420200 5457200 8925200 3212500 5712700 4220300 1944000 2276300 23224 2190 24220 122496;122497;122498;122499;122500;122501;122502;122503;122504;122505;122506;122507;122508;122509;122510;122511;122512;122513 123630;123631;123632;123633;123634;123635;123636;123637;123638;123639;123640;123641;123642;123643;123644;123645;123646;123647;123648;123649;123650 123638 21 LTQEETNFK QTEQELKEKEKELQKLTQEETNFKSLVHDL EKELQKLTQEETNFKSLVHDLFQKVEEAKS K L T F K S 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 9 0 1108.5401 Q9NTJ3;E9PD53 Q9NTJ3 565 573 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0054443 71.501 By MS/MS By matching By MS/MS 1 1 1 1.3449 1.0041 8.6187 3 Plateau NaN NaN NaN 0 0 Median 1.0226 0.90617 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3449 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2973 1.0754 NaN 1 0 Median 107020000 44511000 62507000 0 0 0 2432800 1227800 1205000 0 0 0 100800000 41692000 59112000 0 0 0 3781100 1591000 2190100 23225 4108 24221 122514;122515;122516 123651;123652 123651 2 LTQEPESIRK NGPADGYAAIAQADRLTQEPESIRKWREEQ AQADRLTQEPESIRKWREEQRKRLQELDAA R L T R K W 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 1 1199.651 P09497;H0Y9Q6 P09497 96 105 CLTB Clathrin light chain B yes no 3 0.021993 23.851 By MS/MS By MS/MS By matching 1 1 1 1.1195 1.0613 8.5183 3 Median 1.1195 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1246 1.0613 NaN 1 0 Median 0.8943 0.93722 NaN 1 0 Median NaN NaN NaN 0 0 Median 1881100 818170 1062900 801410 334690 466720 0 0 0 0 0 0 510980 192130 318850 568690 291340 277340 0 0 0 23226 1916 24222 122517;122518;122519 123653;123654 123654 2 LTQEQVSDSQVLIR MIRHYVSILLQSDKKLTQEQVSDSQVLIRS KLTQEQVSDSQVLIRSRVLRENGKYIPKQS K L T I R S 0 1 0 1 0 3 1 0 0 1 2 0 0 0 0 2 1 0 0 2 0 0 14 0 1614.8577 Q9P0I2;S4R3U9 Q9P0I2 44 57 EMC3 ER membrane protein complex subunit 3 yes no 2;3 1.213E-08 131.82 By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 1.2531 1.1923 23.392 7 Median 0.98072 0.93722 25.876 3 1 Median 1.5911 1.3454 NaN 1 0 Median 1.3301 1.275 9.5926 2 0 Median NaN NaN NaN 0 0 Median 1.2531 1.2359 NaN 1 0 Median NaN NaN NaN 0 0 Median 52077000 24569000 27509000 29644000 15758000 13887000 5900300 2295400 3604900 13796000 5892200 7903900 0 0 0 2737000 623530 2113500 0 0 0 23227 4202 24223 122520;122521;122522;122523;122524;122525;122526 123655;123656;123657;123658;123659;123660;123661;123662 123656 8 LTQILSYLR EAQTTLTTNDIVISKLTQILSYLRQGTRNK DIVISKLTQILSYLRQGTRNKKLKKKDKGK K L T L R Q 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q13123 Q13123 282 290 IK Protein Red yes yes 2 0.00043177 128.69 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 4 4 1 1.1926 1.0898 19.717 13 Median 1.2172 1.1814 NaN 1 0 Median 1.1842 0.9928 NaN 1 0 Median 1.5603 1.6138 31.805 2 0 Median 1.3444 1.1397 10.049 4 0 Median 0.98618 1.0237 6.708 4 0 Median 1.1831 1.0176 NaN 1 0 Median 56869000 25787000 31082000 1483800 904630 579160 2756300 1205100 1551200 18878000 7710100 11168000 3451900 1502100 1949800 28504000 13622000 14881000 1794800 842690 952110 23228 2787 24224 122527;122528;122529;122530;122531;122532;122533;122534;122535;122536;122537;122538;122539 123663;123664;123665;123666;123667;123668;123669;123670;123671 123668 9 LTQLELINK ELKRFEAFQRQIHERLTQLELINKQYRRLA RQIHERLTQLELINKQYRRLARENRTDTAS R L T N K Q 0 0 1 0 0 1 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1070.6336 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 6190 6198 SYNE2 Nesprin-2 yes no 2 8.0451E-05 148.99 By matching By MS/MS By MS/MS 2 1 2 1.7193 1.4398 24.132 5 Median NaN NaN NaN 0 0 Median 1.829 1.6006 2.1435 2 0 Median 0.83705 0.89433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6159 1.371 6.9286 2 0 Median 18449000 9732300 8717100 0 0 0 3338900 1770800 1568200 14097000 7566200 6531100 0 0 0 0 0 0 1013200 395390 617820 23229 3521 24225 122540;122541;122542;122543;122544 123672;123673;123674 123673 3 LTQLGTFEDHFLSLQR RALEEKKVCQGTSNKLTQLGTFEDHFLSLQ TQLGTFEDHFLSLQRMFNNCEVVLGNLEIT K L T Q R M 0 1 0 1 0 2 1 1 1 0 4 0 0 2 0 1 2 0 0 0 0 0 16 0 1903.9792 Q504U8;E9PFD7;P00533 Q504U8 38 53 EGFR Receptor protein-tyrosine kinase;Epidermal growth factor receptor yes no 3 0.060525 9.4152 By MS/MS By matching 1 1 0.38347 0.37661 152.78 2 Median 1.1053 1.1094 NaN 1 0 Median 0.13303 0.12785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2455000 1428600 1026400 1869100 861930 1007200 585880 566700 19182 0 0 0 0 0 0 0 0 0 0 0 0 23230 918 24226 122545;122546 123675 123675 1 LTQNVDLLGLLK SKDSFQISTLVCSTKLTQNVDLLGLLKWRS STKLTQNVDLLGLLKWRSNTSLLQQNLRQL K L T L K W 0 0 1 1 0 1 0 1 0 0 5 1 0 0 0 0 1 0 0 1 0 0 12 0 1325.7919 A0A096LNH6;Q14185 A0A096LNH6 634 645 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.003025 47.187 By matching By MS/MS 1 1 0.97333 0.96763 10.821 2 Median NaN NaN NaN 0 0 Median 1.1781 1.0446 NaN 1 0 Median 0.80415 0.89635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7908300 3682000 4226400 0 0 0 5376700 2354400 3022300 2531600 1327600 1204000 0 0 0 0 0 0 0 0 0 23231 140 24227 122547;122548 123676;123677 123676 2 LTQQLEEER IPDQQLLKALDENAKLTQQLEEERIQHQQK LDENAKLTQQLEEERIQHQQKVKELEEQLE K L T E R I 0 1 0 0 0 2 3 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1144.5724 A0MZ66 A0MZ66 272 280 KIAA1598 Shootin-1 yes yes 2 0.0038329 62.546 By MS/MS 1 0.91504 0.88351 NaN 1 Median 0.91504 0.88351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3886600 1927000 1959600 3886600 1927000 1959600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23232 490 24228 122549 123678;123679 123679 2 LTQTSGETTHTDKEPVGEGK AQKVEVKEELLAVGKLTQTSGETTHTDKEP GETTHTDKEPVGEGKGTKAFKQPAKRKLDA K L T G K G 0 0 0 1 0 1 3 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2114.0128 P46013 P46013 2861 2880 MKI67 Antigen KI-67 yes yes 4 0.06271 8.089 By MS/MS By matching By matching 1 2 1 0.90087 0.90722 11.966 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90191 1.0251 NaN 1 0 Median 0.93363 0.90722 11.456 2 0 Median NaN NaN NaN 0 0 Median 0.89983 0.80298 NaN 1 0 Median 1951500 973510 978000 0 0 0 0 0 0 875180 446030 429140 514340 246140 268200 0 0 0 562000 281330 280660 23233 2335 24229 122550;122551;122552;122553 123680 123680 1 LTQTSGETTHTDKVPGGEDKSINAFR LEKRDVQKELSALKKLTQTSGETTHTDKVP DKVPGGEDKSINAFRETAKQKLDPAASVTG K L T F R E 1 1 1 2 0 1 2 3 1 1 1 2 0 1 1 2 5 0 0 1 0 0 26 2 2788.3628 P46013 P46013 1410 1435 MKI67 Antigen KI-67 yes yes 4;5 3.6867E-05 31.6 By MS/MS 3 0.88646 1.1712 18.896 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88646 1.1712 18.896 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25492000 13273000 12219000 0 0 0 0 0 0 25492000 13273000 12219000 0 0 0 0 0 0 0 0 0 23234 2335 24230 122554;122555;122556 123681;123682;123683;123684 123683 4 LTQTVAHLK LVRNNKGRSSTYEVRLTQTVAHLKQQVSGL STYEVRLTQTVAHLKQQVSGLEGVQDDLFW R L T L K Q 1 0 0 0 0 1 0 0 1 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 1009.592 A0A096LNZ9;A0A096LPJ4;P05161 A0A096LNZ9 92 100 ISG15 Ubiquitin-like protein ISG15 yes no 2 0.0040235 61.962 By matching By MS/MS By matching 1 2 1 1.5344 1.3914 13.905 4 Median 1.5079 1.4213 NaN 1 0 Median 1.5095 1.2942 7.2265 2 0 Median 1.701 1.7147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2839200 1003100 1836200 692170 288350 403820 1866700 620620 1246100 280340 94099 186240 0 0 0 0 0 0 0 0 0 23235 141 24231 122557;122558;122559;122560 123685 123685 1 LTQVLNTHYVAPR MIVDEGHRMKNHHCKLTQVLNTHYVAPRRL CKLTQVLNTHYVAPRRLLLTGTPLQNKLPE K L T P R R 1 1 1 0 0 1 0 0 1 0 2 0 0 0 1 0 2 0 1 2 0 0 13 0 1510.8256 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6;P51531;A0A0U1RQZ9 P51532 893 905 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 1.8478E-40 185.08 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 6 4 1 2 1.0851 0.95903 14.211 13 Median NaN NaN NaN 0 0 Median 1.1081 0.94103 NaN 1 1 Median 0.85186 0.92869 20.575 6 2 Median 1.1135 0.9865 9.0204 3 1 Median 0.92231 0.94414 NaN 1 0 Median 1.2702 1.0419 2.5441 2 0 Median 354220000 186000000 168220000 0 0 0 3240400 1753900 1486400 280350000 151350000 129000000 44481000 19989000 24492000 15912000 8407700 7504800 10239000 4501600 5737300 23236 366;2433 24232 122561;122562;122563;122564;122565;122566;122567;122568;122569;122570;122571;122572;122573;122574 123686;123687;123688;123689;123690;123691;123692;123693;123694;123695;123696;123697;123698;123699;123700 123689 15 LTRDETNYGIPQR MILSASRDKTIIMWKLTRDETNYGIPQRAL WKLTRDETNYGIPQRALRGHSHFVSDVVIS K L T Q R A 0 2 1 1 0 1 1 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 13 1 1561.7849 P63244;D6RAC2;D6RHH4;D6REE5;D6R9L0;D6R9Z1;D6RFX4;D6RFZ9;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909 P63244 45 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2;3 1.8681E-21 196.11 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 1 0.96966 0.99137 11.518 9 Median 0.94784 1.0204 1.1301 2 0 Median 0.9476 0.87222 13.479 2 0 Median 0.91107 0.95093 18.168 2 0 Median 1.0598 0.98895 0.34591 2 1 Median 0.96966 1.1391 NaN 1 0 Median NaN NaN NaN 0 0 Median 331140000 158710000 172420000 175210000 86364000 88845000 61621000 28215000 33406000 20742000 9698700 11043000 73354000 34342000 39012000 210380 94290 116090 0 0 0 23237 2624 24233 122575;122576;122577;122578;122579;122580;122581;122582;122583;122584 123701;123702;123703;123704;123705;123706;123707;123708;123709;123710;123711;123712;123713;123714 123704 14 LTSADALRPSVVSITGPLIR EQKEEAAKALGLVIRLTSADALRPSVVSIT ALRPSVVSITGPLIRILGDRFSWNVKAALL R L T I R I 2 2 0 1 0 0 0 1 0 2 3 0 0 0 2 3 2 0 0 2 0 0 20 1 2065.1895 Q92616 Q92616 2293 2312 GCN1L1 Translational activator GCN1 yes yes 2;3 3.198E-14 104.61 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 1 1 1 0.80142 0.82633 14.278 10 Median 0.79109 0.84599 3.3637 3 0 Median 0.81726 0.8169 8.0282 4 0 Median 0.63708 0.80479 NaN 1 0 Median 0.8806 0.79744 NaN 1 0 Median 1.1492 1.2432 NaN 1 1 Median NaN NaN NaN 0 0 Median 56660000 30378000 26282000 22651000 12429000 10222000 29367000 15368000 13999000 3460200 2065200 1395000 157520 78369 79151 1024800 437500 587340 0 0 0 23238 3544 24234 122585;122586;122587;122588;122589;122590;122591;122592;122593;122594 123715;123716;123717;123718;123719;123720;123721;123722;123723;123724 123716 10 LTSAVSSLPELLEK EDEGAISMLSDNTAKLTSAVSSLPELLEKK KLTSAVSSLPELLEKKRLIDLHTNVATAVL K L T E K K 1 0 0 0 0 0 2 0 0 0 4 1 0 0 1 3 1 0 0 1 0 0 14 0 1485.829 Q8WVM8 Q8WVM8 382 395 SCFD1 Sec1 family domain-containing protein 1 yes yes 2 0.00098277 53.237 By MS/MS By matching 1 1 0.42635 0.4469 54.548 2 Median 0.68221 0.65724 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.26646 0.30388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3435000 2226900 1208100 2664900 1702100 962790 0 0 0 770110 524840 245280 0 0 0 0 0 0 0 0 0 23239 3503 24235 122595;122596 123725;123726 123725 2 LTSDDVKEQIYK QSALPYRRSVPTWLKLTSDDVKEQIYKLAK WLKLTSDDVKEQIYKLAKKGLTPSQIGVIL K L T Y K L 0 0 0 2 0 1 1 0 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1437.7351 P62277;J3KMX5;E9PS50 P62277 28 39 RPS13 40S ribosomal protein S13 yes no 2;3 6.0843E-39 192.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 2 2 1.118 1.0225 19.456 15 Median 1.0042 0.99355 4.1186 4 0 Median 1.1221 0.98809 1.889 3 1 Plateau 1.118 1.112 37.032 3 1 Median 1.3638 1.2285 NaN 1 0 Median 1.2002 1.3798 1.9489 2 0 Median 1.3305 1.1222 4.372 2 0 Median 991380000 471340000 520030000 714090000 342620000 371470000 200180000 95785000 104390000 41755000 17702000 24053000 5289100 2197400 3091600 20387000 8843600 11543000 9681800 4197300 5484500 23240 2580 24236 122597;122598;122599;122600;122601;122602;122603;122604;122605;122606;122607;122608;122609;122610;122611 123727;123728;123729;123730;123731;123732;123733;123734;123735;123736;123737;123738;123739;123740;123741;123742;123743;123744;123745;123746;123747 123743 21 LTSDLTFAYER WPRAGAVAERLWSNKLTSDLTFAYERLSHF WSNKLTSDLTFAYERLSHFRCELLR_____ K L T E R L 1 1 0 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 1 0 0 0 11 0 1314.6456 H3BS10;H3BP20;P06865;A0A087WUJ7 H3BS10 489 499 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.00013889 117.7 By MS/MS 1 0.91687 0.88586 NaN 1 Median 0.91687 0.88586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7867400 4133400 3733900 7867400 4133400 3733900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23241 1218 24237 122612 123748;123749 123748 2 LTSDSTVYDYAGK VSTEAPPIIFATPTKLTSDSTVYDYAGKNK TKLTSDSTVYDYAGKNKVPELQKFFQKADG K L T G K N 1 0 0 2 0 0 0 1 0 0 1 1 0 0 0 2 2 0 2 1 0 0 13 0 1418.6565 O14548;E5RJZ1;H0YBD2 O14548 45 57 COX7A2L Cytochrome c oxidase subunit 7A-related protein, mitochondrial yes no 2 9.0305E-07 100.72 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.92503 0.79806 21.769 6 Median 0.88765 0.80331 NaN 1 0 Median 1.0583 0.87252 13.542 2 0 Median 0.73484 0.73696 42.728 2 1 Median 0.89374 0.72946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73321000 36108000 37214000 27029000 14169000 12860000 42292000 19620000 22672000 3119300 1825800 1293500 880480 492730 387750 0 0 0 0 0 0 23242 1483 24238 122613;122614;122615;122616;122617;122618 123750;123751;123752;123753;123754;123755;123756;123757 123754 8 LTSELDK QYEREKVLLTEENKKLTSELDKLTTLYENL LLTEENKKLTSELDKLTTLYENLSIHNQQL K L T D K L 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 7 0 804.4229 A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25 A0A0A0MRJ1 43 49 CDC42BPA Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase MRCK alpha yes no 2 0.013989 75.311 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2455 1.1407 7.5497 4 Median 1.2859 1.244 NaN 1 0 Median 1.3492 1.1292 NaN 1 0 Median 1.0909 1.1524 NaN 1 0 Median 1.2063 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20895000 9314500 11580000 1707700 794790 912900 13167000 5613700 7553100 4944400 2369400 2575000 1076100 536660 539420 0 0 0 0 0 0 23243 162 24239 122619;122620;122621;122622 123758;123759;123760;123761 123761 4 LTSEPQPQR ESGVQHKPSAPQGGRLTSEPQPQREGCGC_ APQGGRLTSEPQPQREGCGC__________ R L T Q R E 0 1 0 0 0 2 1 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 9 0 1054.5407 P61106 P61106 202 210 RAB14 Ras-related protein Rab-14 yes yes 2 0.039605 33.797 By MS/MS 1 0.81943 0.76907 NaN 1 Median 0.81943 0.76907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 823340 419180 404160 823340 419180 404160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23244 2545 24240 122623 123762 123762 1 LTSFIGAIAIGDLVK IFKAGADEERAETARLTSFIGAIAIGDLVK LTSFIGAIAIGDLVKSTLGPKGMDKILLSS R L T V K S 2 0 0 1 0 0 0 2 0 3 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1516.8865 P78371;F5GWF6;F8VQ14 P78371 26 40 CCT2 T-complex protein 1 subunit beta yes no 2 0.00034792 56.225 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 1.218 1.0457 13.916 6 Median 1.2536 1.2033 NaN 1 0 Median 1.1761 0.99338 NaN 1 1 Median 1.3416 1.3774 NaN 1 0 Median 1.1834 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1856 0.99668 7.4574 2 0 Median 45582000 19759000 25823000 4268700 1896400 2372400 39097000 16887000 22209000 1782200 779610 1002600 186740 85827 100910 0 0 0 248140 110200 137940 23245 2644 24241 122624;122625;122626;122627;122628;122629 123763;123764 123763 2 LTSLAAALDENKDGKVNIDDLVK LINAMKQVKHIPESKLTSLAAALDENKDGK DENKDGKVNIDDLVKVIELVDKEDVHISTS K L T V K V 3 0 2 4 0 0 1 1 0 1 4 3 0 0 0 1 1 0 0 2 0 0 23 2 2441.3013 O95202 O95202 668 690 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 0.00047609 26.84 By MS/MS By matching 1 1 1.0655 1.0403 11.476 2 Median 1.1547 1.1282 NaN 1 0 Median 0.98311 0.95921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8113000 3765500 4347500 6166600 2847300 3319300 1946400 918220 1028200 0 0 0 0 0 0 0 0 0 0 0 0 23246 1754 24242 122630;122631 123765 123765 1 LTSLLEETLNK ELVQLGFISEADQSRLTSLLEETLNKFNFA DQSRLTSLLEETLNKFNFARNSTLNSAAVT R L T N K F 0 0 1 0 0 0 2 0 0 0 4 1 0 0 0 1 2 0 0 0 0 0 11 0 1259.6973 Q9UHY1;F8W6G1 Q9UHY1 507 517 NRBP1 Nuclear receptor-binding protein yes no 2 0.0042699 48.283 By MS/MS By matching By matching 1 1 1 1.1847 1.0994 18.742 3 Plateau 1.1847 1.1295 NaN 1 0 Median 1.1336 0.96813 NaN 1 0 Median 0.76714 0.77789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11437000 5864400 5572300 6244200 3225600 3018600 4049800 2037200 2012600 1142800 601640 541120 0 0 0 0 0 0 0 0 0 23247 4285 24243 122632;122633;122634 123766;123767 123766 2 LTSLNEEYTK TVDIQKNGVKFTNSKLTSLNEEYTKNKTEY FTNSKLTSLNEEYTKNKTEYEEAQDAIVKE K L T T K N 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 1 2 0 1 0 0 0 10 0 1196.5925 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02 P43246 556 565 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00014428 120.12 By MS/MS By MS/MS By MS/MS 1 2 1 1.1117 1.2107 11.381 4 Median 1.0152 0.98787 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1117 1.2107 1.7816 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5495 1.2766 NaN 1 0 Median 34911000 16669000 18241000 6199200 3184800 3014500 0 0 0 26087000 12417000 13670000 0 0 0 0 0 0 2624800 1067400 1557400 23248 2324 24244 122635;122636;122637;122638 123768;123769;123770;123771 123769 4 LTSLVPFVDAFQLER LQQVSQIYQSIEFSRLTSLVPFVDAFQLER LTSLVPFVDAFQLERAIVDAARHCDLQVRI R L T E R A 1 1 0 1 0 1 1 0 0 0 3 0 0 2 1 1 1 0 0 2 0 0 15 0 1733.9352 Q14152 Q14152 455 469 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00011603 69.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 1 1 0.99812 0.96414 10.702 12 Median 0.95627 0.90947 6.828 4 1 Median 1.1264 0.96362 11.171 3 0 Median 0.98573 1.0839 8.6504 3 0 Plateau 1.0941 0.96467 NaN 1 0 Median 1.1432 1.2172 NaN 1 1 Median NaN NaN NaN 0 0 Median 149740000 78217000 71518000 119490000 63783000 55712000 12848000 6095200 6753200 14850000 7156300 7693800 768840 379010 389830 1773200 803730 969490 0 0 0 23249 2860 24245 122639;122640;122641;122642;122643;122644;122645;122646;122647;122648;122649;122650 123772;123773;123774;123775;123776;123777;123778;123779;123780;123781 123772 10 LTSMHFYGWK SQSLNIHIAEPNYGKLTSMHFYGWKQGLKT PNYGKLTSMHFYGWKQGLKTGMYYLRTRPA K L T W K Q 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 1 1 1 1 0 0 0 10 0 1268.6012 P23921;E9PL69 P23921 720 729 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2;3 0.0052914 66.073 By MS/MS By matching 3 1 1.35 1.2333 7.9358 4 Median 1.3528 1.2373 4.2861 3 2 Median 1.2147 1.0963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26811000 11363000 15448000 26045000 10996000 15049000 766510 367290 399220 0 0 0 0 0 0 0 0 0 0 0 0 23250 2121 24246 122651;122652;122653;122654 123782;123783;123784;123785 123785 4 LTSNPLASHDYILK QNIHGAFNALGGADRLTSNPLASHDYILKI RLTSNPLASHDYILKIVPTVYEDKSGKQRY R L T L K I 1 0 1 1 0 0 0 0 1 1 3 1 0 0 1 2 1 0 1 0 0 0 14 0 1570.8355 Q969X5 Q969X5 177 190 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 2;3 0.0001649 79.659 By MS/MS By matching 2 1 1.5874 1.4398 46.717 3 Median 1.1841 1.0749 41.327 2 0 Median 2.4038 2.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63644000 26706000 36938000 55755000 24204000 31551000 7889400 2502700 5386700 0 0 0 0 0 0 0 0 0 0 0 0 23251 3590 24247 122655;122656;122657 123786;123787;123788 123788 3 LTSPVTSISPIQASEK PPTVTKITGGSSVPKLTSPVTSISPIQASE TSPVTSISPIQASEKTAVSDILKMSLMEAQ K L T E K T 1 0 0 0 0 1 1 0 0 2 1 1 0 0 2 4 2 0 0 1 0 0 16 0 1656.8934 E9PMC9;Q7Z589 E9PMC9 1030 1045 C11orf30;EMSY Protein EMSY yes no 2 0.00011405 65.395 By MS/MS 2 0.63097 0.68342 2.6814 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63097 0.68342 2.6814 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6739900 3935400 2804500 0 0 0 0 0 0 6739900 3935400 2804500 0 0 0 0 0 0 0 0 0 23252 966 24248 122658;122659 123789;123790 123789 2 LTSSLTTK RYEDFSNLGTTHLLRLTSSLTTKGASSFKI GTTHLLRLTSSLTTKGASSFKITRGIEAVG R L T T K G 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 2 3 0 0 0 0 0 8 0 849.48075 P22695;H3BRG4;H3BSJ9;H3BP04;H3BUE4;H3BUI9;A0A087WVZ4 P22695 85 92 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.041504 36.557 By matching By MS/MS 1 1 1.3471 1.2424 20.659 2 Median 1.0883 1.0736 NaN 1 0 Median 1.6674 1.4378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3109900 1164000 1945800 478240 238050 240190 2631600 925980 1705600 0 0 0 0 0 0 0 0 0 0 0 0 23253 2105 24249 122660;122661 123791;123792 123791 2 LTSSSIDPGLSIK DEEDFLNSTKAKLLKLTSSSIDPGLSIKQL LKLTSSSIDPGLSIKQLGGLYINFNADKLQ K L T I K Q 0 0 0 1 0 0 0 1 0 2 2 1 0 0 1 4 1 0 0 0 0 0 13 0 1316.7187 Q5QJE6 Q5QJE6 559 571 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.00010955 84.658 By MS/MS 4 1.0111 1.0522 11.398 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0111 1.0522 11.398 4 1 Median NaN NaN NaN 0 0 Median 31042000 15009000 16033000 0 0 0 0 0 0 0 0 0 0 0 0 31042000 15009000 16033000 0 0 0 23254 3067 24250 122662;122663;122664;122665 123793;123794;123795 123794 3 LTSVTLEMESK LRKQYLSENEQWQQKLTSVTLEMESKLAAE WQQKLTSVTLEMESKLAAEKKQTEQLSLEL K L T S K L 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 2 2 0 0 1 0 0 11 0 1236.6272 P49454 P49454 1613 1623 CENPF Centromere protein F yes yes 2 0.0024976 77.379 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23255 2383 24251 122666 123796 123796 1 LTTAASLLDVFVLTR LFRLLYWWAGTTWYRLTTAASLLDVFVLTR LTTAASLLDVFVLTRRFSSLKTFLWFLLPL R L T T R R 2 1 0 1 0 0 0 0 0 0 4 0 0 1 0 1 3 0 0 2 0 0 15 0 1618.9294 Q9UH99;B0QY64;H0Y686;B0QY63 Q9UH99 191 205 SUN2 SUN domain-containing protein 2 yes no 2 0.0080653 32.498 By matching By MS/MS 1 1 0.96337 1.0072 0.78432 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96971 1.0016 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95708 1.0128 NaN 1 0 Median NaN NaN NaN 0 0 Median 858430 440720 417710 0 0 0 0 0 0 296130 146970 149160 0 0 0 562290 293750 268550 0 0 0 23256 4271 24252 122667;122668 123797 123797 1 LTTAQEVLAR DIEPAALPQPPATEKLTTAQEVLARARNLI PATEKLTTAQEVLARARNLISPRMEKALSQ K L T A R A 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 10 0 1100.619 Q9H211 Q9H211 357 366 CDT1 DNA replication factor Cdt1 yes yes 2 0.0010495 85.676 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23257 3938 24253 122669 123798 123798 1 LTTASQTNIK EQKKRKLLPDTILEKLTTASQTNIKKSPGK TILEKLTTASQTNIKKSPGKVKEVNLQKKN K L T I K K 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 3 0 0 0 0 0 10 0 1075.5873 Q9UMY1;H7C2B1 Q9UMY1 122 131 NOL7 Nucleolar protein 7 yes no 2 0.040057 31.074 By matching By matching By MS/MS 1 1 1 0.93014 0.91689 8.1014 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82573 0.80092 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93014 0.91689 NaN 1 0 Median 1.1107 0.92582 NaN 1 0 Median 1632900 836300 796630 0 0 0 0 0 0 170300 81693 88606 0 0 0 958450 515860 442600 504170 238740 265420 23258 4338 24254 122670;122671;122672 123799 123799 1 LTTDFGNAEK WLYSARGDFFRATSRLTTDFGNAEKTDRFV RATSRLTTDFGNAEKTDRFVMKKLNDRVMR R L T E K T 1 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1094.5244 P02786;G3V0E5;H7C3V5 P02786 656 665 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0020728 61.56 By MS/MS By MS/MS 1 2 1.1411 0.9971 65.991 3 Median 1.3559 1.3011 NaN 1 0 Median 0.70032 0.60887 69.755 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22071000 12087000 9983900 3632400 1555000 2077500 18439000 10532000 7906400 0 0 0 0 0 0 0 0 0 0 0 0 23259 1836 24255 122673;122674;122675 123800;123801;123802;123803 123801 4 LTTDFNVIVEALSK WVPLEIMIKFNRLNRLTTDFNVIVEALSKS RLTTDFNVIVEALSKSKAELMEISEDKTKI R L T S K S 1 0 1 1 0 0 1 0 0 1 2 1 0 1 0 1 2 0 0 2 0 0 14 0 1548.8399 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 61 74 SSB Lupus La protein yes no 2 2.3729E-07 119.76 By MS/MS By MS/MS By matching By matching 4 1 1 1 1.1526 1.068 20.569 6 Median NaN NaN NaN 0 0 Median 1.8121 1.5285 30.376 3 0 Plateau 1.0173 0.98009 NaN 1 0 Median 1.207 1.075 NaN 1 0 Median 1.1007 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median 82060000 27757000 54303000 0 0 0 64724000 19194000 45529000 16084000 7952500 8131000 222750 111640 111100 1030000 498200 531810 0 0 0 23260 1867 24256 122676;122677;122678;122679;122680;122681;122682 123804;123805;123806;123807 123805 4 LTTDPDLILEVLR FIPIWTVANMEEIKKLTTDPDLILEVLRSS KKLTTDPDLILEVLRSSPMVQVDEKGEKVR K L T L R S 0 1 0 2 0 0 1 0 0 1 4 0 0 0 1 0 2 0 0 1 0 0 13 0 1496.845 Q71RC2;Q96J85;F8W1I4;Q8TBL5;A0A087WTL9;F8VY40 Q71RC2 166 178 LARP4 La-related protein 4 yes no 2 0.0026016 47.261 By MS/MS By matching By matching 2 1 1 0.9174 0.91503 17.614 4 Median 0.9174 0.91503 1.3329 2 0 Median 0.79863 0.69144 NaN 1 0 Median 1.0046 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7487200 3937000 3550200 2255900 1097800 1158100 4842300 2665200 2177200 388980 174090 214890 0 0 0 0 0 0 0 0 0 23261 3211 24257 122683;122684;122685;122686 123808;123809;123810;123811 123811 4 LTTEEVIK LQKALEDAFLAIDAKLTTEEVIKELAQIAG FLAIDAKLTTEEVIKELAQIAGRPTEDEDE K L T I K E 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 8 0 931.52261 O15355 O15355 105 112 PPM1G Protein phosphatase 1G yes yes 2 0.0059586 73.26 By MS/MS By MS/MS By MS/MS 1 1 1 0.84466 0.84879 6.8573 3 Median 0.83625 0.78398 NaN 1 0 Median 1.0137 0.84879 NaN 1 0 Median 0.84466 0.89867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28960000 14504000 14456000 13491000 6999900 6491000 12139000 5965000 6173700 3330700 1539000 1791600 0 0 0 0 0 0 0 0 0 23262 1538 24258 122687;122688;122689 123812;123813;123814;123815 123814 4 LTTIAHNMSGPNSSSEWSIEGR ERHRAEVRRAVNDERLTTIAHNMSGPNSSS MSGPNSSSEWSIEGRRLVPLMPRLVPQTAF R L T G R R 1 1 2 0 0 0 2 2 1 2 1 0 1 0 1 5 2 1 0 0 0 0 22 0 2373.1019 E9PMC9;Q7Z589 E9PMC9 76 97 C11orf30;EMSY Protein EMSY yes no 3 3.2854E-12 63.165 By MS/MS 1 0.68448 0.75274 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68448 0.75274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8568900 4629800 3939100 0 0 0 0 0 0 8568900 4629800 3939100 0 0 0 0 0 0 0 0 0 23263 966 24259 122690 123816;123817 123816 2 LTTLADLFRPPIDLMHK RQEQELRNGGAIDKKLTTLADLFRPPIDLM TLADLFRPPIDLMHKGSFETAKECGQMQNK K L T H K G 1 1 0 2 0 0 0 0 1 1 4 1 1 1 2 0 2 0 0 0 0 0 17 1 1980.0867 O94888 O94888 135 151 UBXN7 UBX domain-containing protein 7 yes yes 3 0.059828 10.593 By matching By MS/MS 2 1 0.81341 0.78659 18.786 3 Plateau 0.64672 0.65977 4.3223 2 0 Median 0.98813 0.90955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2593600 1465600 1128000 1184900 695140 489730 1408700 770420 638280 0 0 0 0 0 0 0 0 0 0 0 0 23264 1733 24260 122691;122692;122693 123818 123818 1 LTTLELLEVR KSAATWDERFSALERLTTLELLEVRRQQEE SALERLTTLELLEVRRQQEEEERKRRPPSP R L T V R R 0 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 10 0 1185.6969 Q01082;A0A087WUZ3 Q01082 2079 2088 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00041856 75.378 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 4 2 1 1.1296 1.018 20.979 15 Median 1.2074 1.1776 7.5185 2 0 Median 1.2678 1.018 6.0282 3 0 Median 0.87632 0.9552 20.72 3 0 Median 1.1437 0.99446 30.274 4 0 Median 1.1039 1.1662 1.7245 2 0 Median 0.94443 0.77977 NaN 1 0 Median 69341000 32595000 36746000 9231500 4074200 5157300 20629000 8956800 11672000 29059000 14913000 14146000 3617900 1507700 2110200 6466600 2980300 3486300 337730 162640 175090 23265 2681 24261 122694;122695;122696;122697;122698;122699;122700;122701;122702;122703;122704;122705;122706;122707;122708 123819;123820;123821;123822;123823;123824;123825;123826;123827;123828;123829;123830 123820 12 LTTLELLEVRR KSAATWDERFSALERLTTLELLEVRRQQEE ALERLTTLELLEVRRQQEEEERKRRPPSPE R L T R R Q 0 2 0 0 0 0 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 11 1 1341.798 Q01082;A0A087WUZ3 Q01082 2079 2089 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.6036E-08 108.57 By matching By MS/MS By matching By matching 2 2 2 1 1.0015 1.2295 20.894 7 Median 1.2843 1.3734 0.90138 2 0 Median NaN NaN NaN 0 0 Median 0.94287 1.1911 4.4855 2 0 Median NaN NaN NaN 0 0 Median 0.98276 1.0655 35.443 2 0 Median 1.0015 0.90535 NaN 1 0 Median 21120000 10061000 11059000 5563700 2353200 3210500 0 0 0 12009000 6275900 5733300 0 0 0 3249900 1283300 1966600 297100 148520 148580 23266 2681 24262 122709;122710;122711;122712;122713;122714;122715 123831;123832;123833 123833 2 LTTLPSDFCGLTHLVK AALPKATILDLSCNKLTTLPSDFCGLTHLV TTLPSDFCGLTHLVKLDLSKNKLQQLPADF K L T V K L 0 0 0 1 1 0 0 1 1 0 4 1 0 1 1 1 3 0 0 1 0 0 16 0 1800.9444 Q96AG4 Q96AG4 51 66 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 3 0.0021025 29.733 By MS/MS 3 1.0027 0.94038 22.374 3 Median NaN NaN NaN 0 0 Median 1.0027 0.94038 22.374 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2947100 1490800 1456400 0 0 0 2947100 1490800 1456400 0 0 0 0 0 0 0 0 0 0 0 0 23267 3600 24263 122716;122717;122718 123834 123834 1 LTTPPVNTR MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS PYLVPKLTTPPVNTRVLAFLSSVAGDALTR K L T T R V 0 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 3 0 0 1 0 0 9 0 997.55564 Q92616 Q92616 2084 2092 GCN1L1 Translational activator GCN1 yes yes 2 0.016483 48.283 By MS/MS By matching 2 1 0.88783 0.75044 21.718 3 Median NaN NaN NaN 0 0 Median 1.0309 0.8725 21.312 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79489 0.66546 NaN 1 0 Median 8339600 3935400 4404200 0 0 0 7317000 3367100 3949900 0 0 0 0 0 0 0 0 0 1022600 568230 454340 23268 3544 24264 122719;122720;122721 123835;123836 123835 2 LTTPTYGDLNHLVSATMSGVTTCLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTCLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 1 0 0 2 1 0 4 0 1 0 1 2 6 0 1 2 0 0 25 0 2707.3309 P04350;M0R2D3;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 217 241 TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 1.2107E-21 95.71 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1.015 0.87915 21.854 7 Median 0.85274 0.83124 NaN 1 0 Median 1.0305 0.87915 2.913 3 0 Median 0.9075 0.90583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5332 1.5322 NaN 1 0 Median 0.93898 0.82243 NaN 1 0 Median 26076000 11208000 14868000 251730 128050 123680 8905300 4139300 4766000 6407900 3064900 3342900 0 0 0 10027000 3646000 6380900 484280 229830 254440 23269 2634;1887;3849;2844;1849 24265 122722;122723;122724;122725;122726;122727;122728 123837;123838;123839;123840;123841;123842 123841 6 LTTPTYGDLNHLVSATMSGVTTSLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTSLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 0 0 0 2 1 0 4 0 1 0 1 3 6 0 1 2 0 0 25 0 2634.3323 Q9BUF5;K7ESM5 Q9BUF5 217 241 TUBB6 Tubulin beta-6 chain yes no 3 3.0989E-17 66.501 By MS/MS By MS/MS By matching 1 1 1 1.0668 0.89729 13.702 3 Median NaN NaN NaN 0 0 Median 1.0668 0.89729 NaN 1 0 Median 1.0966 1.1005 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79225 0.84823 NaN 1 0 Median NaN NaN NaN 0 0 Median 17020000 7977700 9041900 0 0 0 12198000 5826700 6371200 4585300 2006500 2578800 0 0 0 236300 144480 91825 0 0 0 23270 3838 24266 122729;122730;122731 123843;123844;123845 123844 3 LTTSDIDYALK AQDALKFMHMGKRQKLTTSDIDYALKLKNV KRQKLTTSDIDYALKLKNVEPLYGFHAQEF K L T L K L 1 0 0 2 0 0 0 0 0 1 2 1 0 0 0 1 2 0 1 0 0 0 11 0 1238.6394 J3KR72;P49848;C9JFL8;C9JTY6;E5RKA5;F8WEJ7;C9J7C4;C9JIS2;E5RHA1;C9J088;C9JHQ8 J3KR72 123 133 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 0.0061426 64.711 By MS/MS 1 0.73906 0.76353 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73906 0.76353 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7227500 4318400 2909000 0 0 0 0 0 0 7227500 4318400 2909000 0 0 0 0 0 0 0 0 0 23271 1323 24267 122732 123846 123846 1 LTTTGQVTSPVK KAAGTPKKKAVVQAKLTTTGQVTSPVKGAS QAKLTTTGQVTSPVKGASFVTSTNPRKFSG K L T V K G 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 4 0 0 2 0 0 12 0 1230.682 P49916;K7ERZ5;K7ENR9 P49916 202 213 LIG3 DNA ligase 3 yes no 2 0.00015936 87.298 By MS/MS By MS/MS 1 2 1.2668 1.0671 17.051 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7278 0.80246 NaN 1 0 Median 1.2926 1.0776 1.3895 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7299100 3954500 3344600 0 0 0 0 0 0 5257400 3105100 2152300 2041700 849370 1192300 0 0 0 0 0 0 23272 2406 24268 122733;122734;122735 123847;123848;123849;123850;123851 123848 5 LTTVLTTHHHWDHAGGNEK QPQKVVDAARKHGVKLTTVLTTHHHWDHAG LTTHHHWDHAGGNEKLVKLESGLKVYGGDD K L T E K L 1 0 1 1 0 0 1 2 4 0 2 1 0 0 0 0 4 1 0 1 0 0 19 0 2153.0402 H3BPK3;Q16775;H3BPQ4;H3BQW8 H3BPK3 26 44 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 3;4;5 6.2132E-14 106.94 By MS/MS By MS/MS By matching By MS/MS 5 4 2 3 1.2168 1.0829 13.993 14 Median 0.98373 0.96258 13.63 5 0 Median 1.3366 1.1213 11.136 4 0 Median 1.0984 1.0732 0.31923 2 0 Median 1.6046 1.3266 12.732 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84411000 36881000 47530000 44959000 19664000 25295000 32805000 14207000 18598000 2088300 1147000 941330 4558900 1862600 2696300 0 0 0 0 0 0 23273 1224 24269 122736;122737;122738;122739;122740;122741;122742;122743;122744;122745;122746;122747;122748;122749 123852;123853;123854;123855;123856;123857;123858;123859;123860;123861;123862;123863;123864;123865 123860 14 LTVAENEAETK KSCQFVAVRRDTGEKLTVAENEAETKLQAI TGEKLTVAENEAETKLQAILEDIQVTLFTR K L T T K L 2 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1203.5983 P07814 P07814 1390 1400 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.00011283 125.97 By MS/MS By MS/MS By MS/MS 1 2 1 1.1573 1.0984 10.219 3 Plateau 1.0603 1.0185 NaN 1 0 Median 1.2631 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0025 0.91248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17089000 7500100 9589200 5618400 2415000 3203400 10519000 4645000 5874100 0 0 0 951830 440130 511690 0 0 0 0 0 0 23274 1892 24270 122750;122751;122752;122753 123866;123867;123868;123869;123870;123871;123872 123869 7 LTVDDFEFR DQDLVVRIETATTLKLTVDDFEFRTDQFLP TATTLKLTVDDFEFRTDQFLPYLETMFTLL K L T F R T 0 1 0 2 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 9 0 1140.5451 Q9UI26;F8WDV0 Q9UI26 541 549 IPO11 Importin-11 yes no 2 0.027065 51.346 By MS/MS 1 0.94468 0.92944 NaN 1 Median 0.94468 0.92944 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2321300 1124600 1196700 2321300 1124600 1196700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23275 4288 24271 122754 123873 123873 1 LTVDEAVR QAGTGHIIDPATSARLTVDEAVRAGLVGPE DPATSARLTVDEAVRAGLVGPEFHEKLLSA R L T V R A 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 901.4869 Q15149;H0YDN1 Q15149 3213 3220 PLEC Plectin yes no 2 0.0023931 117.16 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 4 2 1 1 2 1.3042 1.2505 9.8108 10 Median 1.0587 1.0342 NaN 1 0 Median 1.3884 1.2482 7.1904 3 0 Median 1.2169 1.3194 7.3136 2 0 Median 1.3209 1.1506 NaN 1 0 Median 1.3026 1.3369 NaN 1 0 Median 1.4476 1.1849 13.383 2 0 Median 111930000 48391000 63539000 13729000 6794100 6934800 54338000 22589000 31750000 11166000 5448200 5718200 3542000 1638700 1903400 12276000 5130800 7145700 16879000 6790800 10088000 23276 2933 24272 122755;122756;122757;122758;122759;122760;122761;122762;122763;122764;122765 123874;123875;123876;123877;123878;123879;123880;123881;123882;123883;123884;123885;123886;123887 123878 14 LTVDSAIAR QAATGGIIDPHRNEKLTVDSAIARDLIDFD PHRNEKLTVDSAIARDLIDFDDRQQIYAAE K L T A R D 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 944.5291 P15924 P15924 2067 2075 DSP Desmoplakin yes yes 2 9.3866E-05 147.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 3 0.83874 0.81234 31.704 10 Median NaN NaN NaN 0 0 Median 1.1613 0.98935 22.656 3 2 Median 0.58839 0.64076 27.935 2 1 Median 0.62763 0.54893 35.537 2 2 Median 0.8254 0.84527 NaN 1 0 Median 1.3222 1.0825 3.8183 2 0 Median 74102000 39367000 34735000 0 0 0 22561000 11637000 10924000 11527000 7265400 4261400 6297600 4304200 1993400 15306000 8355600 6950400 18411000 7805100 10606000 23277 2021 24273 122766;122767;122768;122769;122770;122771;122772;122773;122774;122775;122776 123888;123889;123890;123891;123892;123893;123894;123895;123896;123897;123898;123899;123900;123901;123902 123891 15 LTVEDLEK DDEAAELMQQVNVLKLTVEDLEKERDFYFG QQVNVLKLTVEDLEKERDFYFGKLRNIELI K L T E K E 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 945.50188 Q15691 Q15691 205 212 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2 0.0034726 94.114 By MS/MS By MS/MS By MS/MS 1 1 2 1.1524 1.0398 20.521 4 Linear NaN NaN NaN 0 0 Median 1.0409 0.87186 NaN 1 1 Median 1.2135 1.1705 NaN 1 0 Median 0.96876 0.80349 17.474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116080000 54269000 61814000 0 0 0 33195000 15913000 17281000 44281000 20017000 24264000 38607000 18338000 20269000 0 0 0 0 0 0 23278 2963 24274 122777;122778;122779;122780 123903;123904;123905;123906;123907 123903 5 LTVEDLEKER DDEAAELMQQVNVLKLTVEDLEKERDFYFG VNVLKLTVEDLEKERDFYFGKLRNIELICQ K L T E R D 0 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1230.6456 Q15691 Q15691 205 214 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2;3 1.2429E-05 141.48 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 2 1.0678 1.0641 12.045 11 Median 1.0378 1.0381 NaN 1 0 Median 1.0172 0.92365 9.2143 4 1 Median 1.1351 1.2075 2.4342 4 0 Median 1.1078 1.0454 5.6053 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138740000 63028000 75708000 7047700 3358100 3689600 14628000 6930500 7697800 70560000 31842000 38718000 46500000 20898000 25602000 0 0 0 0 0 0 23279 2963 24275 122781;122782;122783;122784;122785;122786;122787;122788;122789;122790;122791 123908;123909;123910;123911;123912;123913;123914;123915;123916;123917;123918;123919;123920;123921;123922 123911 15 LTVEDLEKERDFYFGK DDEAAELMQQVNVLKLTVEDLEKERDFYFG TVEDLEKERDFYFGKLRNIELICQENEGEN K L T G K L 0 1 0 2 0 0 3 1 0 0 2 2 0 2 0 0 1 0 1 1 0 0 16 2 1987.9891 Q15691 Q15691 205 220 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3 0.021084 20.389 By MS/MS By matching By matching 1 1 1 1.186 1.2286 28.247 3 Median 1.186 1.2286 NaN 1 0 Median 1.0892 1.0511 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.873 1.8186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8488500 3146200 5342300 4090400 1902400 2188000 646200 301740 344460 0 0 0 3751900 942110 2809800 0 0 0 0 0 0 23280 2963 24276 122792;122793;122794 123923;123924 123923 2 LTVEDPVTVEYITR RIVINRARVECQSHRLTVEDPVTVEYITRY RLTVEDPVTVEYITRYIASLKQRYTQSNGR R L T T R Y 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 3 0 1 3 0 0 14 0 1633.8563 O14818;H0Y586;Q8TAA3;A0A087WYS6 O14818 96 109 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2;3 5.533E-08 113.22 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1 1.0088 0.94838 12.824 9 Median 0.97805 0.94838 2.1331 3 0 Median 1.0799 0.91826 1.8579 2 0 Median 1.1798 1.1177 21.016 2 0 Median 1.23 1.0138 NaN 1 0 Median 0.81101 0.80232 NaN 1 0 Median NaN NaN NaN 0 0 Median 164860000 80129000 84727000 133780000 64951000 68826000 15707000 7598000 8109100 11269000 5486500 5782200 682050 308800 373250 3421100 1785400 1635700 0 0 0 23281 1497 24277 122795;122796;122797;122798;122799;122800;122801;122802;122803 123925;123926;123927;123928;123929;123930;123931;123932;123933;123934;123935;123936 123927 12 LTVEEAFK QAATGFIIDPVENRKLTVEEAFKAGMFGKE DPVENRKLTVEEAFKAGMFGKETYVKLLSA K L T F K A 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 0 935.4964 P58107;A0A075B730 P58107 1623 1630 EPPK1 Epiplakin yes no 2 0.0046283 86.953 By MS/MS By MS/MS 1 1 0.95358 0.94855 NaN 1 Median 0.95358 0.94855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5306900 2938500 2368500 5306900 2938500 2368500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23282 2520 24278 122804;122805 123937;123938 123937 2 LTVEFMHYIIAAR RTGKCHVQTIQLCRRLTVEFMHYIIAARAL RRLTVEFMHYIIAARALRKVFLSIKGIYYQ R L T A R A 2 1 0 0 0 0 1 0 1 2 1 0 1 1 0 0 1 0 1 1 0 0 13 0 1562.8279 B5MCF9;O00541;B3KXD6;H7BYY8 B5MCF9 164 176 PES1 Pescadillo homolog yes no 2 0.0020176 49.368 By MS/MS 1 0.89542 0.77431 NaN 1 Median NaN NaN NaN 0 0 Median 0.89542 0.77431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1909900 882000 1027900 0 0 0 1909900 882000 1027900 0 0 0 0 0 0 0 0 0 0 0 0 23283 618 24279 122806 123939 123939 1 LTVENSPK CRQWLEKNFPNEFAKLTVENSPKQEAGISE FPNEFAKLTVENSPKQEAGISEGQGTAGEE K L T P K Q 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 8 0 886.476 O43583;F8VVL1 O43583 68 75 DENR Density-regulated protein yes no 2 0.0055363 75.213 By matching By matching By MS/MS By MS/MS 2 1 2 1 0.99004 0.89247 54.727 6 Median 0.39033 0.38733 69.451 2 0 Median 1.021 0.91981 NaN 1 0 Median 0.99004 0.95709 0.74416 2 0 Median 1.0269 0.86594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8140100 4046000 4094100 842690 491940 350750 593550 230770 362770 4147100 2069300 2077900 2556800 1254000 1302800 0 0 0 0 0 0 23284 1575 24280 122807;122808;122809;122810;122811;122812 123940;123941;123942;123943 123942 4 LTVEQAVLLSR QLKSMVLTLGLIDLRLTVEQAVLLSRLEEE IDLRLTVEQAVLLSRLEEEYQIQKWGNIEW R L T S R L 1 1 0 0 0 1 1 0 0 0 3 0 0 0 0 1 1 0 0 2 0 0 11 0 1227.7187 Q8N5M1 Q8N5M1 228 238 ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 yes yes 2 0.00016746 95.573 By MS/MS By matching 1 1 1.565 1.4048 22.918 2 Median 1.2639 1.1946 NaN 1 0 Median 1.9378 1.6519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7302200 3110100 4192000 6369100 2850800 3518300 933090 259380 673720 0 0 0 0 0 0 0 0 0 0 0 0 23285 3381 24281 122813;122814 123944;123945 123945 2 LTVIDTPGFGDHINNENCWQPIMK KSITHDIEEKGVRMKLTVIDTPGFGDHINN GDHINNENCWQPIMKFINDQYEKYLQEEVN K L T M K F 0 0 3 2 1 1 1 2 1 3 1 1 1 1 2 0 2 1 0 1 0 0 24 0 2798.3156 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9;K7EJZ2 Q9UHD8 358 381 SEPT9 Septin-9 yes no 3 0.061168 6.7984 By MS/MS 1 0.80914 0.86053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80914 0.86053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3593600 1992200 1601300 0 0 0 0 0 0 3593600 1992200 1601300 0 0 0 0 0 0 0 0 0 23286 4276 24282 122815 123946 123946 1 LTVLPPELGNLDLTGQK GELTQLKELHIQGNRLTVLPPELGNLDLTG VLPPELGNLDLTGQKQVFKAENNPWVTPIA R L T Q K Q 0 0 1 1 0 1 1 2 0 0 5 1 0 0 2 0 2 0 0 1 0 0 17 0 1807.0091 Q15404 Q15404 192 208 RSU1 Ras suppressor protein 1 yes yes 2 0.0045101 31.431 By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 2 0.84534 0.69996 4.5228 7 Median 0.72335 0.69996 NaN 1 0 Median 0.84959 0.71656 NaN 1 0 Median 0.72889 0.69759 NaN 1 0 Median 0.86668 0.71998 6.7112 2 0 Median NaN NaN NaN 0 0 Median 0.81671 0.68327 6.7578 2 0 Median 14543000 8044000 6499300 3579800 1971500 1608400 1688500 938450 750050 4171900 2420200 1751700 1408800 706800 702020 0 0 0 3694300 2007100 1687200 23287 2949 24283 122816;122817;122818;122819;122820;122821;122822 123947;123948;123949;123950 123947 4 LTVLSEER LLAAGHYASDEVREKLTVLSEERAALLELW SDEVREKLTVLSEERAALLELWELRRQQYE K L T E R A 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 8 0 945.51311 A0A0D9SF54;Q13813 Q13813 442 449 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 1.1211E-09 178.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 3 1.0183 0.94803 32.018 11 Median 1.2728 1.2023 NaN 1 0 Median 1.6494 1.3593 15.072 2 1 Median 0.91088 0.99291 NaN 1 0 Median 1.0844 0.94803 19.734 3 0 Plateau 1.0057 1.0307 NaN 1 0 Median 1.0239 0.84413 30.928 3 0 Plateau 151280000 69415000 81867000 6416100 2597200 3818900 56059000 21528000 34531000 36291000 19949000 16342000 16720000 7908100 8812200 14222000 6785700 7436200 21573000 10646000 10927000 23288 264;2838 24284 122823;122824;122825;122826;122827;122828;122829;122830;122831;122832;122833;122834 123951;123952;123953;123954;123955;123956;123957;123958;123959;123960;123961;123962;123963;123964;123965;123966;123967;123968 123958 18 LTVMSLQESGLK PYLVPVIAPSDDARRLTVMSLQESGLKVNQ ARRLTVMSLQESGLKVNQPASFAIRLNGAK R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 1 0 0 2 1 0 0 1 0 0 12 0 1304.701 O75369;E7EN95 O75369 2290 2301 FLNB Filamin-B yes no 2 5.6831E-05 123.63 By MS/MS By MS/MS By MS/MS 2 1 1 1.3634 1.2898 27.487 4 Median 1.7403 1.7098 23.228 2 1 Median 1.285 1.1467 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2089 1.1117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66079000 25491000 40588000 36153000 12591000 23562000 29525000 12711000 16814000 0 0 0 401180 189410 211770 0 0 0 0 0 0 23289 1664 24285 122835;122836;122837;122838 123969;123970;123971;123972 123969 4 LTVMYSQINGASR LSQASADLEATLRHKLTVMYSQINGASRAL HKLTVMYSQINGASRALDDVRNRQQDVRMT K L T S R A 1 1 1 0 0 1 0 1 0 1 1 0 1 0 0 2 1 0 1 1 0 0 13 0 1438.7238 Q14258;A0A3B3IUA7 Q14258 206 218 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.014456 33.866 By matching By MS/MS 1 1 1.4952 1.409 33.107 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6811 1.7806 NaN 1 0 Median 1.3299 1.1149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4072500 1691200 2381400 0 0 0 0 0 0 3293000 1369000 1923900 779580 322120 457470 0 0 0 0 0 0 23290 2870 24286 122839;122840 123973;123974 123973 2 LTVNDFVR LLPQLLGVAPEKAIKLTVNDFVRDKFMHKD APEKAIKLTVNDFVRDKFMHKDGSVPLAAE K L T V R D 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 8 0 962.51853 O75746;Q9UJS0 Q9UJS0 409 416 SLC25A12;SLC25A13 Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2 no no 2 0.0035902 86.953 By MS/MS By matching By matching 1 1 1 0.87552 0.92377 20.257 3 Median 0.72293 0.68943 NaN 1 0 Median 1.1784 1.0172 NaN 1 0 Median 0.87552 0.92377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13110000 7128800 5981200 9971400 5629100 4342300 1588200 700480 887690 1550300 799180 751150 0 0 0 0 0 0 0 0 0 23291 4297;1694 24287 122841;122842;122843 123975;123976 123975 2 LTVNEAVK QAASGFLLDPVRNRRLTVNEAVKEGVVGPE DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R L T V K E 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 872.49673 Q15149;H0YDN1 Q15149 2885 2892 PLEC Plectin yes no 2 0.0075885 66.429 By MS/MS By MS/MS By matching By matching By MS/MS 1 2 1 1 1 1.264 1.1851 19.144 6 Median 1.2119 1.2004 NaN 1 0 Median 1.6276 1.4469 33.88 2 0 Median 1.0675 1.17 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2606 1.2799 NaN 1 0 Median 1.2674 1.0856 NaN 1 0 Median 16402000 6680300 9721300 1457200 755750 701460 7000900 2609600 4391300 1893300 811890 1081400 0 0 0 244700 113650 131040 5805400 2389400 3416100 23292 2933 24288 122844;122845;122846;122847;122848;122849 123977;123978;123979;123980;123981 123981 5 LTVNPGTK PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K L T T K S 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 8 0 828.47052 P09874 P09874 655 662 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0044851 81.297 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 1 0.97098 0.91607 14.55 9 Median 0.70885 0.7175 NaN 1 0 Median 0.97098 0.84522 NaN 1 0 Median 0.88489 0.95895 1.3848 2 0 Median 1.1897 1.0479 11.47 3 0 Median 0.75499 0.77677 NaN 1 0 Median 1.0587 0.87395 NaN 1 0 Median 29349000 14672000 14676000 409130 252560 156570 2946200 1445900 1500300 12913000 6438200 6475100 9564700 4642300 4922400 1662000 906420 755530 1853100 986610 866510 23293 1922 24289 122850;122851;122852;122853;122854;122855;122856;122857;122858 123982;123983;123984;123985;123986;123987;123988 123986 7 LTVSEWLR LKRLPVPESITGFARLTVSEWLRLLPFLGV SITGFARLTVSEWLRLLPFLGVLALLGYLA R L T L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 1 0 1 0 0 8 0 1002.5498 Q8N5K1 Q8N5K1 33 40 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes yes 2 0.015483 50.127 By MS/MS By matching 1 1 1.3314 1.2083 16.848 2 Median 1.0983 1.0726 NaN 1 0 Median 1.614 1.3611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1598500 696570 901910 1322700 593780 728950 275760 102790 172970 0 0 0 0 0 0 0 0 0 0 0 0 23294 3379 24290 122859;122860 123989 123989 1 LTVSNVLK DSTCRMVTSESKNVKLTVSNVLKEIKILNI SESKNVKLTVSNVLKEIKILNIFGVIKGFV K L T L K E 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 8 0 872.53312 P02786;G3V0E5 P02786 375 382 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.017569 48.561 By MS/MS By MS/MS By matching 2 1 1 1.351 1.3063 7.5523 4 Median 1.351 1.3063 0.72093 2 0 Median 1.2887 1.1262 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.487 1.3155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13461000 5600500 7860200 7277900 2887000 4390800 5893700 2598600 3295100 0 0 0 289240 114930 174310 0 0 0 0 0 0 23295 1836 24291 122861;122862;122863;122864 123990;123991 123991 2 LTVSSLQESGLK PFVVPVASPSGDARRLTVSSLQESGLKVNQ ARRLTVSSLQESGLKVNQPASFAVSLNGAK R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 12 0 1260.6925 P21333;Q60FE5;A0A087WWY3 P21333 2335 2346 FLNA Filamin-A no no 2 2.3221E-06 166.19 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1.1102 1.0203 29.428 8 Median 1.2474 1.2224 2.8672 2 0 Median 1.0775 0.95447 9.4427 3 0 Median 1.1439 1.26 NaN 1 0 Median 0.65646 0.61753 8.0284 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 321080000 149770000 171310000 117710000 51251000 66455000 175610000 85383000 90227000 20282000 9032900 11249000 7486300 4105000 3381400 0 0 0 0 0 0 23296 2088;3120 24292 122865;122866;122867;122868;122869;122870;122871;122872 123992;123993;123994;123995;123996;123997;123998;123999;124000;124001;124002;124003;124004;124005;124006 123993 15 LTVTSLQETGLK PFVVPVASLSDDARRLTVTSLQETGLKVNQ ARRLTVTSLQETGLKVNQPASFAVQLNGAR R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 1 3 0 0 1 0 0 12 0 1288.7238 Q14315 Q14315 2411 2422 FLNC Filamin-C yes yes 2 2.2232E-07 134.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 2 2 1 1 1.3695 1.2674 40.859 14 Median 1.4113 1.389 0.3057 2 0 Median 1.3411 1.1977 5.1881 6 4 Median 1.2851 1.4582 60.242 2 0 Median 1.3272 1.2339 11.566 2 0 Median 4.7185 4.9581 NaN 1 1 Median 1.8439 1.5848 NaN 1 0 Median 139360000 57463000 81896000 44033000 17035000 26998000 80513000 35130000 45383000 8224700 3370200 4854500 2069500 875840 1193700 3799100 781690 3017400 719090 270010 449080 23297 2871 24293 122873;122874;122875;122876;122877;122878;122879;122880;122881;122882;122883;122884;122885;122886 124007;124008;124009;124010;124011;124012;124013;124014;124015;124016;124017;124018 124013 12 LTVVDTPGYGDAINCR EASTVEIEERGVKLRLTVVDTPGYGDAINC TVVDTPGYGDAINCRDCFKTIISYIDEQFE R L T C R D 1 1 1 2 1 0 0 2 0 1 1 0 0 0 1 0 2 0 1 2 0 0 16 0 1749.8356 Q15019;B5MCX3;C9J2Q4;C9JB25;H7C310;C9J938;C9IY94;C9IZU3;C9JQJ4;B5MD47 Q15019 97 112 SEPT2 Septin-2 yes no 2 0.00012379 66.262 By matching By matching By MS/MS By matching 1 1 1 1 0.98109 0.94475 11.733 4 Median 0.62806 0.76588 NaN 1 0 Median 1.118 0.99761 NaN 1 0 Median 0.86093 0.93287 NaN 1 0 Median 1.1369 0.95679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6754800 3262200 3492600 1725000 835170 889820 314740 159120 155620 4433900 2138500 2295400 281120 129400 151720 0 0 0 0 0 0 23298 2914 24294 122887;122888;122889;122890 124019;124020 124019 2 LTVYTTLIDVTK ETMYDVLSTKPVLNKLTVYTTLIDVTKGQF LNKLTVYTTLIDVTKGQFETYLRDCPDPCI K L T T K G 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 4 0 1 2 0 0 12 0 1365.7755 Q13510;A0A1B0GTP7;A0A1B0GUH5;A0A1B0GTZ5;A0A1B0GTM3;A0A1B0GUA4;A0A1B0GW68;E7EMM4;A0A1B0GUW4;A0A1B0GUG1;A0A1B0GUE3;A0A1B0GV06 Q13510 367 378 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 2 0.00058963 73.067 By MS/MS By MS/MS 1 1 1.2627 1.1314 33.21 2 Median 0.95247 0.8946 NaN 1 1 Median 1.674 1.4309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8920200 3642600 5277600 2907900 1377400 1530500 6012400 2265300 3747100 0 0 0 0 0 0 0 0 0 0 0 0 23299 319 24295 122891;122892 124021;124022;124023 124022 3 LTWHAYPEDAENK NVKCPQIVIAFYEERLTWHAYPEDAENKEK ERLTWHAYPEDAENKEKETAKS________ R L T N K E 2 0 1 1 0 0 2 0 1 0 1 1 0 0 1 0 1 1 1 0 0 0 13 0 1572.7209 P45973 P45973 172 184 CBX5 Chromobox protein homolog 5 yes yes 2;3 0.00050487 49.929 By MS/MS By MS/MS By MS/MS 1 2 6 1.1796 0.97542 21.301 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67185 0.63283 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67072 0.68441 3.7196 2 0 Median 1.2367 0.99677 9.7601 6 0 Median 34023000 16847000 17177000 0 0 0 0 0 0 5931400 3423000 2508400 0 0 0 8786400 5049700 3736700 19306000 8374100 10932000 23300 2331 24296 122893;122894;122895;122896;122897;122898;122899;122900;122901 124024;124025;124026;124027;124028;124029;124030;124031 124029 8 LTWHAYPEDAENKEK NVKCPQIVIAFYEERLTWHAYPEDAENKEK LTWHAYPEDAENKEKETAKS__________ R L T E K E 2 0 1 1 0 0 3 0 1 0 1 2 0 0 1 0 1 1 1 0 0 0 15 1 1829.8584 P45973 P45973 172 186 CBX5 Chromobox protein homolog 5 yes yes 3;4 1.099E-05 84.62 By matching By MS/MS By MS/MS 3 2 2 0.85876 0.87832 20.072 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85876 0.87832 15.958 3 0 Median NaN NaN NaN 0 0 Median 0.62434 0.66568 0.84405 2 0 Median 1.1804 1.0245 4.8237 2 0 Median 52061000 25522000 26539000 0 0 0 0 0 0 6526900 3535000 2992000 0 0 0 11927000 6934000 4993100 33607000 15053000 18554000 23301 2331 24297 122902;122903;122904;122905;122906;122907;122908 124032;124033;124034;124035;124036 124034 5 LTWHSCPEDEAQ NMKCPQIVIAFYEERLTWHSCPEDEAQ___ EERLTWHSCPEDEAQ_______________ R L T A Q - 1 0 0 1 1 1 2 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 12 0 1471.6038 Q13185 Q13185 172 183 CBX3 Chromobox protein homolog 3 yes yes 2 0.0011865 84.476 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11238000 0 0 0 0 0 9518200 0 0 0 0 0 0 0 0 1720100 0 0 0 0 0 23302 2795 24298 122909;122910;122911 124037;124038;124039 124039 3 LTWHSYPSEDDDKKDDK NVKCPQVVISFYEERLTWHSYPSEDDDKKD WHSYPSEDDDKKDDKN______________ R L T D K N 0 0 0 5 0 0 1 0 1 0 1 3 0 0 1 2 1 1 1 0 0 0 17 2 2077.9229 P83916 P83916 168 184 CBX1 Chromobox protein homolog 1 yes yes 4 0.021259 18.471 By matching By MS/MS 1 1 1.1823 1.1317 6.5823 2 Median NaN NaN NaN 0 0 Median 1.2116 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1537 1.0802 NaN 1 0 Median 4741200 2049300 2691900 0 0 0 1570600 686430 884200 0 0 0 0 0 0 0 0 0 3170600 1362900 1807700 23303 2663 24299 122912;122913 124040 124040 1 LTYEIEDEKR KCYGQIKELNEKITRLTYEIEDEKRRRKSV EKITRLTYEIEDEKRRRKSVEDRFDQQKND R L T K R R 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1294.6405 P15924 P15924 1114 1123 DSP Desmoplakin yes yes 2;3 0.00057068 67.993 By MS/MS By MS/MS By matching 1 3 1 0.64036 0.64841 39.566 5 Median 0.63336 0.64841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64036 0.59647 37.57 3 1 Median NaN NaN NaN 0 0 Median 1.2031 1.1231 NaN 1 0 Median 5505800 2984900 2520800 1091500 669250 422220 0 0 0 0 0 0 2315500 1332900 982620 0 0 0 2098800 982790 1116000 23304 2021 24300 122914;122915;122916;122917;122918 124041;124042;124043;124044 124042 4 LTYEIEDEKRR KCYGQIKELNEKITRLTYEIEDEKRRRKSV KITRLTYEIEDEKRRRKSVEDRFDQQKNDY R L T R R R 0 2 0 1 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 11 2 1450.7416 P15924 P15924 1114 1124 DSP Desmoplakin yes yes 3 0.027843 36.585 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.58428 0.65027 61.612 5 Median NaN NaN NaN 0 0 Median 1.2461 1.0998 6.3406 2 0 Median 0.21524 0.24487 NaN 1 0 Median 0.58428 0.59379 NaN 1 0 Median 0.55587 0.65027 NaN 1 0 Median NaN NaN NaN 0 0 Median 8960500 4732500 4228000 0 0 0 4815300 2084900 2730400 1713500 1279100 434480 683230 369230 314000 1748500 999330 749130 0 0 0 23305 2021 24301 122919;122920;122921;122922;122923;122924 124045;124046 124045 2 LTYENGLLK EPQGFHKVAGLLTQKLTYENGLLKMNFTGG GLLTQKLTYENGLLKMNFTGGDTCHKVYQR K L T L K M 0 0 1 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 1 0 0 0 9 0 1049.5757 P11717 P11717 1302 1310 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.0022552 73.26 By matching By MS/MS 1 1 1.1528 1.0795 0.97734 2 Median 1.0799 1.0721 NaN 1 0 Median 1.2307 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13902000 5899300 8002500 3637600 1398900 2238600 10264000 4500400 5763800 0 0 0 0 0 0 0 0 0 0 0 0 23306 1969 24302 122925;122926 124047;124048 124048 2 LTYHQLLER GTGDLRFLDPNTLERLTYHQLLERCVRAPG PNTLERLTYHQLLERCVRAPGSGLALLPLK R L T E R C 0 1 0 0 0 1 1 0 1 0 3 0 0 0 0 0 1 0 1 0 0 0 9 0 1171.635 P58107;A0A075B730 P58107 209 217 EPPK1 Epiplakin yes no 2 0.00056756 113.62 By MS/MS By MS/MS By matching 1 1 1 1.5468 1.2541 109.81 3 Plateau 1.3754 1.3574 NaN 1 0 Median 1.5468 1.2541 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.19919 0.195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21216000 9067000 12149000 8156100 2944700 5211400 11040000 4469000 6571500 0 0 0 2019400 1653200 366110 0 0 0 0 0 0 23307 2520 24303 122927;122928;122929 124049;124050 124049 2 LTYLLQNSLGGSAK ALSNKESHVPYRNSKLTYLLQNSLGGSAKM KLTYLLQNSLGGSAKMLMFVNISPLEENVS K L T A K M 1 0 1 0 0 1 0 2 0 0 4 1 0 0 0 2 1 0 1 0 0 0 14 0 1463.7984 Q9BW19;A0A087X1W5 Q9BW19 620 633 KIFC1 Kinesin-like protein KIFC1;Kinesin-like protein yes no 2 3.1885E-08 131.43 By MS/MS By matching 1 1 0.73981 0.69902 47.159 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95914 0.97569 NaN 1 0 Median 0.57064 0.50081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10477000 5238300 5238400 0 0 0 0 0 0 10381000 5177000 5203900 95765 61249 34516 0 0 0 0 0 0 23308 3860 24304 122930;122931 124051;124052 124051 2 LTYPQPVTPWNVQELR INTNEIGIPMVFATKLTYPQPVTPWNVQEL TYPQPVTPWNVQELRQAVINGPNVHPGASM K L T L R Q 0 1 1 0 0 2 1 0 0 0 2 0 0 0 3 0 2 1 1 2 0 0 16 0 1940.0156 O95602;B9ZVN9 O95602 466 481 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 2.1872E-05 83.617 By matching By MS/MS By matching 1 1 1 0.75762 0.76008 16.709 3 Median 0.75762 0.76008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54859 0.60082 NaN 1 0 Median 0.94868 0.83007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9704500 5864700 3839800 1133200 588850 544360 0 0 0 8126700 5076900 3049700 444640 198900 245740 0 0 0 0 0 0 23309 1781 24305 122932;122933;122934 124053;124054;124055 124055 3 LTYTAEVSVPK HCRAILPCQDTPSVKLTYTAEVSVPKELVA PSVKLTYTAEVSVPKELVALMSAIRDGETP K L T P K E 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 2 0 1 2 0 0 11 0 1206.6496 P09960 P09960 155 165 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.0066585 63.283 By MS/MS By MS/MS 1 1 1.0524 1.0325 8.478 2 Median 1.0495 0.97243 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0553 1.0963 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60305000 29357000 30948000 53834000 26093000 27741000 0 0 0 6470900 3264400 3206500 0 0 0 0 0 0 0 0 0 23310 1924 24306 122935;122936 124056;124057 124056 2 LVAEFTTSLTNFQK TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV RLVAEFTTSLTNFQKVQRQAAEREKEFVAR R L V Q K V 1 0 1 0 0 1 1 0 0 0 2 1 0 2 0 1 3 0 0 1 0 0 14 0 1597.8352 O15400 O15400 93 106 STX7 Syntaxin-7 yes yes 2 5.1659E-06 94.297 By MS/MS By matching By matching 1 1 1 0.93043 0.87381 7.4862 3 Median 0.93043 0.87381 NaN 1 0 Median 1.1641 0.97585 NaN 1 0 Median 0.86455 0.84601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11467000 5512300 5954600 6673900 3356300 3317700 4126900 1874200 2252700 666030 281790 384240 0 0 0 0 0 0 0 0 0 23311 1546 24307 122937;122938;122939 124058;124059 124059 2 LVAGEHGLIIR AEPAYEADVAQLEYKLVAGEHGLIIRVKGF LEYKLVAGEHGLIIRVKGFNHKLPLLFQLI K L V I R V 1 1 0 0 0 0 1 2 1 2 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1176.6979 O43847;G3V1R5;F5H7V1;H0Y5G9 O43847 752 762 NRD1 Nardilysin yes no 2 0.0001815 93.649 By MS/MS By MS/MS 1 1 1.2586 1.1295 9.9886 2 Median 1.258 1.2121 NaN 1 0 Median 1.2592 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21901000 9589900 12311000 10767000 4639100 6127800 11135000 4950900 6183700 0 0 0 0 0 0 0 0 0 0 0 0 23312 1597 24308 122940;122941 124060;124061;124062 124061 3 LVAGEMGQNEPDQGGQR RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG AGEMGQNEPDQGGQRGVIINTASVAAFEGQ R L V Q R G 1 1 1 1 0 3 2 4 0 0 1 0 1 0 1 0 0 0 0 1 0 0 17 0 1784.8112 Q99714;Q5H928 Q99714 131 147 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2;3 3.8688E-24 186.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 0.94192 0.89688 7.5284 7 Median 0.91659 0.86788 0.69693 2 0 Median 1.0581 0.89481 17.82 2 0 Median 0.94192 0.90442 NaN 1 0 Median 1.084 0.89688 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1236 0.91146 NaN 1 0 Median 48875000 23427000 25448000 24208000 11609000 12599000 15009000 6999800 8009700 6891400 3691900 3199500 1708600 677360 1031200 0 0 0 1058400 449230 609130 23313 3764 24309 122942;122943;122944;122945;122946;122947;122948 124063;124064;124065;124066;124067;124068;124069;124070;124071;124072;124073;124074;124075;124076;124077;124078;124079 124071 17 LVAGQQQVLQQLAEEEPK SIRRLEEAQKQRHDRLVAGQQQVLQQLAEE GQQQVLQQLAEEEPKLLAQLAQECQEQRAR R L V P K L 2 0 0 0 0 5 3 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 18 0 2007.0637 Q01970 Q01970 1150 1167 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 4.0314E-11 103.88 By MS/MS By matching 1 2 1.1094 1.0168 9.7751 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0464 1.135 NaN 1 0 Median 1.1165 0.97448 6.0066 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6249900 3011800 3238100 0 0 0 0 0 0 4600800 2230600 2370200 1649100 781240 867900 0 0 0 0 0 0 23314 2695 24310 122949;122950;122951 124080;124081 124080 2 LVAIVDPHIK QPRTMLERLASKRRKLVAIVDPHIKVDSGY SKRRKLVAIVDPHIKVDSGYRVHEELRNLG K L V I K V 1 0 0 1 0 0 0 0 1 2 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1103.6703 E9PKU7;Q14697;F5H6X6 Q14697 463 472 GANAB Neutral alpha-glucosidase AB no no 2 0.0027284 59.245 By MS/MS By MS/MS 2 2 1.0296 0.93024 15.685 4 Median 0.84209 0.79335 15.399 2 0 Median 1.1555 0.99154 1.9117 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99752000 50761000 48991000 52840000 29476000 23364000 46913000 21285000 25628000 0 0 0 0 0 0 0 0 0 0 0 0 23315 2896;951 24311 122952;122953;122954;122955 124082;124083;124084;124085;124086;124087 124082 6 LVAIVDVIDQNR VGRVAYVSFGPHAGKLVAIVDVIDQNRALV AGKLVAIVDVIDQNRALVDGPCTQVRRQAM K L V N R A 1 1 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1353.7616 E7EPB3;P50914 E7EPB3 24 35 RPL14 60S ribosomal protein L14 yes no 2;3 3.0793E-06 147.2 By MS/MS By MS/MS By MS/MS By MS/MS 5 5 8 8 1.1617 1.0439 24.316 25 Median 1.0854 1.048 47.494 5 0 Median 1.1124 0.94122 6.9657 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1823 1.1854 9.0189 8 2 Median 1.3088 1.0439 14.082 7 0 Median 315260000 144200000 171060000 98146000 47271000 50876000 37494000 17874000 19620000 0 0 0 0 0 0 101800000 46518000 55280000 77823000 32541000 45282000 23316 868 24312 122956;122957;122958;122959;122960;122961;122962;122963;122964;122965;122966;122967;122968;122969;122970;122971;122972;122973;122974;122975;122976;122977;122978;122979;122980;122981 124088;124089;124090;124091;124092;124093;124094;124095;124096;124097;124098;124099;124100;124101;124102;124103;124104;124105;124106;124107;124108;124109;124110;124111;124112;124113;124114 124109 27 LVALLNTLDR KKLTFEYRVSEAIEKLVALLNTLDRWIDET EAIEKLVALLNTLDRWIDETPPVDQPSRFG K L V D R W 1 1 1 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 1 0 0 10 0 1126.671 A6PVN5;Q15257;F6WIT2;Q5T949;Q5T948;A6PVN9;A6PVN6;A6PVN7;A6PVN8;C9IZ76 A6PVN5 83 92 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 2 0.0019589 61.962 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.0947 1.0094 20.82 7 Median 0.98156 0.95717 11.085 2 0 Median 1.1308 0.95859 7.3015 2 0 Median 0.95715 0.93791 NaN 1 0 Median 1.218 1.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8536 1.6341 NaN 1 0 Median 44226000 20511000 23715000 21319000 9776400 11543000 19604000 9183300 10421000 2374600 1128100 1246500 727050 343800 383250 0 0 0 201480 79384 122090 23317 533 24313 122982;122983;122984;122985;122986;122987;122988 124115;124116;124117;124118;124119 124116 5 LVALNLDR QLGSYDPLPNSHGEKLVALNLDRIRHWIGC PNSHGEKLVALNLDRIRHWIGCGAHLSKPM K L V D R I 1 1 1 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 912.53927 Q9Y3D3;A6ND22 Q9Y3D3 65 72 MRPS16 28S ribosomal protein S16, mitochondrial yes no 2 0.0034996 92.47 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.48184 0.48774 72.577 5 Median 0.57771 0.56015 38.886 2 0 Median 0.64684 0.55272 NaN 1 0 Median 0.48184 0.48774 NaN 1 1 Median 0.14478 0.11354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110440000 66442000 43999000 28138000 16659000 11479000 56097000 27189000 28908000 14990000 11874000 3115800 11216000 10720000 495640 0 0 0 0 0 0 23318 4422 24314 122989;122990;122991;122992;122993 124120;124121;124122;124123;124124 124121 5 LVALQLR ELSINAEVYSLPSRKLVALQLRSIFIKYKS VYSLPSRKLVALQLRSIFIKYKSKPFCEKL K L V L R S 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 811.52797 V9GZ55;K7ENR6;Q969U7;K7ER45 V9GZ55 93 99 PSMG2 Proteasome assembly chaperone 2 yes no 2 0.011345 80.377 By MS/MS By matching 1 1 1.1762 1.0608 10.739 2 Median 1.2027 1.1444 NaN 1 0 Median 1.1502 0.98319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4830300 2166000 2664400 4292900 1946900 2346000 537410 219090 318320 0 0 0 0 0 0 0 0 0 0 0 0 23319 1388 24315 122994;122995 124125 124125 1 LVALSEPALALLGLGAPPAR ACFTRVQPTPLRQPRLVALSEPALALLGLG EPALALLGLGAPPAREAEAEAALFFSGNAL R L V A R E 5 1 0 0 0 0 1 2 0 0 6 0 0 0 3 1 0 0 0 1 0 0 20 0 1928.1459 A0A087X0Q9;Q9BVL4 A0A087X0Q9 95 114 SELO Selenoprotein O yes no 2 7.7957E-07 54.143 By MS/MS By matching 1 1 0.7146 0.67737 42.965 2 Median 0.49385 0.4999 NaN 1 0 Median 1.034 0.91785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2278000 1406900 871080 1835000 1200700 634320 442980 206210 236760 0 0 0 0 0 0 0 0 0 0 0 0 23320 110 24316 122996;122997 124126 124126 1 LVALSFHSLEDR TGLKTAQKFLRPGGRLVALSFHSLEDRIVK GGRLVALSFHSLEDRIVKRFLLGISMTERF R L V D R I 1 1 0 1 0 0 1 0 1 0 3 0 0 1 0 2 0 0 0 1 0 0 12 0 1385.7303 A6NJ78 A6NJ78 316 327 METTL15 Probable methyltransferase-like protein 15 yes yes 3 0.020309 23.676 By MS/MS By matching 1 1 0.76647 0.80213 52.048 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0648 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55175 0.55515 NaN 1 0 Median NaN NaN NaN 0 0 Median 2699800 1223600 1476200 0 0 0 0 0 0 2137900 925810 1212100 0 0 0 561860 297760 264100 0 0 0 23321 522 24317 122998;122999 124127;124128 124128 2 LVAMGSAWPWLLHSVR LEQHQVLEVGGNTARLVAMGSAWPWLLHSV VAMGSAWPWLLHSVRLKDREDADIQREDPQ R L V V R L 2 1 0 0 0 0 0 1 1 0 3 0 1 0 1 2 0 2 0 2 0 0 16 0 1821.9712 Q12789 Q12789 1803 1818 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.056253 10.196 By matching By MS/MS 1 1 1.0564 1.0236 19.394 2 Median NaN NaN NaN 0 0 Median 1.3925 1.1741 NaN 1 0 Median 0.80142 0.89247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1899400 851610 1047800 0 0 0 1002600 392680 609950 896730 458930 437800 0 0 0 0 0 0 0 0 0 23322 2758 24318 123000;123001 124129 124129 1 LVAMKFLR LVGEIIKRFEQKGFRLVAMKFLRASEEHLK FEQKGFRLVAMKFLRASEEHLKQHYIDLKD R L V L R A 1 1 0 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 1 0 0 8 1 976.58919 Q32Q12;J3KPD9;P22392;F6XY72 Q32Q12 175 182 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B yes no 2 0.04431 60.961 By MS/MS 1 1.5668 1.3821 NaN 1 Median NaN NaN NaN 0 0 Median 1.5668 1.3821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1051800 362450 689340 0 0 0 1051800 362450 689340 0 0 0 0 0 0 0 0 0 0 0 0 23323 3008 24319 123002 124130;124131 124130 2 LVANHVASDISLTGGSVVQR IGVLQSCESALTHYRLVANHVASDISLTGG VASDISLTGGSVVQRIRLPDEVENPGMNSG R L V Q R I 2 1 1 1 0 1 0 2 1 1 2 0 0 0 0 3 1 0 0 4 0 0 20 0 2022.0858 Q9UBV2 Q9UBV2 320 339 SEL1L Protein sel-1 homolog 1 yes yes 3 3.7527E-09 70.907 By MS/MS 1 0.56033 0.53952 NaN 1 Median 0.56033 0.53952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16114000 10217000 5896800 16114000 10217000 5896800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23324 4250 24320 123003 124132 124132 1 LVAPADLSR SEASSVAARGDSRPRLVAPADLSRFEFDEC GDSRPRLVAPADLSRFEFDECEAAVMLVSL R L V S R F 2 1 0 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 9 0 940.53418 I3L2J0 I3L2J0 583 591 CIC yes yes 2 0.046492 31.955 By MS/MS 1 1.1104 0.91892 NaN 1 Median NaN NaN NaN 0 0 Median 1.1104 0.91892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30420000 14145000 16275000 0 0 0 30420000 14145000 16275000 0 0 0 0 0 0 0 0 0 0 0 0 23325 1283 24321 123004 124133 124133 1 LVAQFPSSGR AQNQPIDKARKTYERLVAQFPSSGRFWKLY KTYERLVAQFPSSGRFWKLYIEAEIKAKNY R L V G R F 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 10 0 1060.5665 Q12996;E9PLP8 Q12996 57 66 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 2.8518E-05 143.73 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1.4111 1.2195 25.252 6 Median 1.8037 1.7864 NaN 1 0 Median 1.6566 1.4355 4.9617 2 2 Median 0.91813 0.92056 NaN 1 0 Median 1.2259 1.0566 2.1696 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81931000 40085000 41846000 1741700 536950 1204800 5824200 2239400 3584900 56995000 29804000 27191000 17370000 7504700 9865500 0 0 0 0 0 0 23326 2777 24322 123005;123006;123007;123008;123009;123010 124134;124135;124136;124137;124138;124139 124135 6 LVARPEPATGYTLEFR SVQTADHRFLRHDGRLVARPEPATGYTLEF VARPEPATGYTLEFRSGKVAFRDCEGRYLA R L V F R S 2 2 0 0 0 0 2 1 0 0 2 0 0 1 2 0 2 0 1 1 0 0 16 1 1818.9628 Q16658 Q16658 202 217 FSCN1 Fascin yes yes 2;3 5.792E-14 146.36 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 3 0.78562 0.77011 20.386 12 Median 0.75254 0.75995 18.903 4 1 Median 0.8344 0.75248 32.517 3 0 Median 0.75039 0.81047 5.9823 2 0 Median 0.94818 0.87239 15.141 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 500130000 276380000 223750000 322630000 179310000 143320000 37545000 19808000 17737000 130020000 72217000 57802000 9938200 5038400 4899800 0 0 0 0 0 0 23327 2993 24323 123011;123012;123013;123014;123015;123016;123017;123018;123019;123020;123021;123022 124140;124141;124142;124143;124144;124145;124146;124147;124148;124149;124150;124151;124152;124153;124154;124155 124140 16 LVASAEQLLK FVAVVNKAMSAKFERLVASAEQLLKELPWP AKFERLVASAEQLLKELPWPPTFEKDKFLT R L V L K E 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1070.6336 G3V1D3;G3V180;Q9NY33 G3V1D3 365 374 DPP3 Dipeptidyl peptidase 3 yes no 2 0.00041321 99.442 By MS/MS By matching By MS/MS 3 2 1 1.3244 1.2378 28.549 6 Median 1.2366 1.187 43.672 3 0 Median 1.4255 1.2375 5.9702 2 0 Median 1.2936 1.371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92052000 36830000 55222000 63758000 25095000 38663000 23607000 9750400 13856000 4687100 1984300 2702800 0 0 0 0 0 0 0 0 0 23328 1102 24324 123023;123024;123025;123026;123027;123028 124156;124157;124158;124159 124157 4 LVASAYSIAQK ______________________________ VLMRLVASAYSIAQKAGMIVRRVIAEGDLG R L V Q K A 3 0 0 0 0 1 0 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 11 0 1149.6394 O95861;A6NF51;F8VZG4;F8W1J0;F8VVW8 O95861 11 21 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 2 0.00013635 85.731 By MS/MS By MS/MS By matching 3 2 1 1.0629 0.9688 15.124 6 Median 1.0803 0.99322 15.286 3 0 Median 1.1622 0.983 13.887 2 0 Median NaN NaN NaN 0 0 Median 0.977 0.82017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90385000 39844000 50541000 57900000 26593000 31307000 31739000 12854000 18885000 0 0 0 746180 397390 348790 0 0 0 0 0 0 23329 1799 24325 123029;123030;123031;123032;123033;123034 124160;124161;124162 124161 3 LVASLWGAER KECVDHLSRDEDEEKLVASLWGAERCLRVL EDEEKLVASLWGAERCLRVLESVTVHNPEN K L V E R C 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 10 0 1100.5978 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 844 853 WAPAL Wings apart-like protein homolog yes no 2 0.00095511 69.825 By MS/MS 1 0.9841 1.0824 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9841 1.0824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6663400 3427300 3236100 0 0 0 0 0 0 6663400 3427300 3236100 0 0 0 0 0 0 0 0 0 23330 3249 24326 123035 124163;124164 124163 2 LVASMEEAR EQQRQQQQMEQERQRLVASMEEARRRQHEA EQERQRLVASMEEARRRQHEAEEGVRRKQE R L V A R R 2 1 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 9 0 1004.4961 Q15149;H0YDN1 Q15149 2685 2693 PLEC Plectin yes no 2 0.0011471 84.743 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1.2308 1.1496 17.09 7 Median 0.98109 0.97435 NaN 1 0 Median 1.4375 1.1496 NaN 1 0 Median 1.2544 1.378 NaN 1 0 Median 1.2308 1.0713 NaN 1 0 Median 1.1449 1.2029 NaN 1 0 Median 1.1881 0.97989 26.915 2 0 Median 51665000 21130000 30535000 6828100 3216300 3611800 28122000 11187000 16935000 2957700 1301800 1655900 1356300 584500 771840 3714500 1505900 2208600 8686300 3334500 5351800 23331 2933 24327 123036;123037;123038;123039;123040;123041;123042 124165;124166;124167;124168;124169;124170;124171;124172 124170 8 LVATSLEGK VCSLEFDRKDISMNKLVATSLEGKFHVFDM DISMNKLVATSLEGKFHVFDMRTQHPTKGF K L V G K F 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 916.52295 Q96MX6;H7C389;Q8ND98 Q96MX6 227 235 WDR92;DKFZp434B156 WD repeat-containing protein 92 yes no 2 0.0094971 49.097 By matching By MS/MS By matching 1 1 1 1.3904 1.2001 10.009 3 Median 1.3904 1.367 NaN 1 0 Median 1.318 1.1228 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4337 1.2001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2428500 1020100 1408300 721500 304320 417180 1081200 464110 617120 0 0 0 625730 251700 374040 0 0 0 0 0 0 23332 3705 24328 123043;123044;123045 124173 124173 1 LVDADGPLAR CNDFRGYCDVFMRCRLVDADGPLARLKKAI FMRCRLVDADGPLARLKKAIFSPELYENIA R L V A R L 2 1 0 2 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1025.5506 O14672 O14672 647 656 ADAM10 Disintegrin and metalloproteinase domain-containing protein 10 yes yes 2 0.033662 51.346 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23333 1488 24329 123046 124174 124174 1 LVDAGFVWTEPHSK ALCLKKIKAPLSKVRLVDAGFVWTEPHSKR RLVDAGFVWTEPHSKRLKVKLTIQKEVMNG R L V S K R 1 0 0 1 0 0 1 1 1 0 1 1 0 1 1 1 1 1 0 2 0 0 14 0 1584.7936 C9JA08;Q96D46;C9J0B9;C9IZW9;C9K0C2 C9JA08 95 108 NMD3 60S ribosomal export protein NMD3 yes no 3 0.013835 24.191 By MS/MS 1 0.89126 0.90154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89126 0.90154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4184200 2294200 1890100 0 0 0 0 0 0 4184200 2294200 1890100 0 0 0 0 0 0 0 0 0 23334 683 24330 123047 124175;124176 124175 2 LVDAVLGAEIR NSYSCACLASGSVLRLVDAVLGAEIRNGMA SVLRLVDAVLGAEIRNGMAIIRPPGHHAQH R L V I R N 2 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 2 0 0 11 0 1154.6659 A0A2R8YDE6;Q9UBN7;A0A2R8Y758;A0A2R8Y559;A6NDI8 A0A2R8YDE6 139 149 HDAC6 Histone deacetylase 6 yes no 2 0.00013635 85.731 By matching By matching By MS/MS 1 1 1 0.82553 0.88173 24.489 3 Median 0.58429 0.58589 NaN 1 0 Median 0.99786 0.88173 NaN 1 0 Median 0.82553 0.90794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8669600 4530700 4138800 1316900 757120 559810 520330 289820 230510 6832300 3483800 3348500 0 0 0 0 0 0 0 0 0 23335 396 24331 123048;123049;123050 124177 124177 1 LVDEEPQLTK WPGDILAYKEHLKSKLVDEEPQLTKRTHNV HLKSKLVDEEPQLTKRTHNV__________ K L V T K R 0 0 0 1 0 1 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 10 0 1170.6132 Q9UG63 Q9UG63 609 618 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.00076219 92.051 By MS/MS By MS/MS 1 1 0.75348 0.69127 43.902 2 Median NaN NaN NaN 0 0 Median 1.1192 0.9429 NaN 1 1 Median 0.50727 0.50679 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29519000 18224000 11295000 0 0 0 7146900 3388500 3758500 22372000 14835000 7536900 0 0 0 0 0 0 0 0 0 23336 4262 24332 123051;123052 124178;124179 124178 2 LVDEYSLNAGK GDNGCLDDIRTHYDRLVDEYSLNAGKQRYE HYDRLVDEYSLNAGKQRYEKMISGMYLGEI R L V G K Q 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 11 0 1207.6085 P19367 P19367 728 738 HK1 Hexokinase-1 yes yes 2 0.0004446 103.55 By MS/MS By MS/MS 1 1 1.741 1.5234 NaN 1 Median NaN NaN NaN 0 0 Median 1.741 1.5234 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23138000 7881600 15256000 0 0 0 23138000 7881600 15256000 0 0 0 0 0 0 0 0 0 0 0 0 23337 2064 24333 123053;123054 124180;124181 124181 2 LVDGTGHRPHYSLR IINFYTALRKESGTKLVDGTGHRPHYSLRT KLVDGTGHRPHYSLRTLCRALRFAASNPCG K L V L R T 0 2 0 1 0 0 0 2 2 0 2 0 0 0 1 1 1 0 1 1 0 0 14 1 1606.8328 Q9NU22;Q5T795 Q9NU22 952 965 MDN1 Midasin yes no 3;4 6.5405E-05 77.078 By MS/MS By MS/MS By MS/MS 2 4 3 1.1045 1.0985 17.194 9 Median NaN NaN NaN 0 0 Median 1.0074 0.94416 13.017 2 0 Median 0.95634 1.051 20.799 4 0 Median 1.2709 1.1843 8.674 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27335000 13223000 14112000 0 0 0 8168900 4285500 3883400 15021000 7405300 7616100 4145000 1532400 2612500 0 0 0 0 0 0 23338 4112 24334 123055;123056;123057;123058;123059;123060;123061;123062;123063 124182;124183;124184;124185;124186;124187;124188;124189;124190;124191;124192 124185 11 LVDHIDQTPGFSLQQLR GYRCLADIVVATPGRLVDHIDQTPGFSLQQ DHIDQTPGFSLQQLRFLIIDEADRMIDSMH R L V L R F 0 1 0 2 0 3 0 1 1 1 3 0 0 1 1 1 1 0 0 1 0 0 17 0 1966.0272 Q8N8A6 Q8N8A6 350 366 DDX51 ATP-dependent RNA helicase DDX51 yes yes 3 5.2458E-06 76.85 By MS/MS By matching 1 1 1.018 0.94271 11.629 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8537 0.86829 NaN 1 0 Median 1.214 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13045000 6019200 7026100 0 0 0 0 0 0 12719000 5899400 6819500 326350 119770 206580 0 0 0 0 0 0 23339 3394 24335 123064;123065 124193;124194 124194 2 LVDIIAAVPPQYR KTKTAAKYGLSAQPRLVDIIAAVPPQYRKV PRLVDIIAAVPPQYRKVLMPKLKAKPIRTA R L V Y R K 2 1 0 1 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 2 0 0 13 0 1453.8293 Q9H9T3;E5RHY2;E5RIC0;E5RIZ7;E5RHR2 Q9H9T3 57 69 ELP3 Elongator complex protein 3 yes no 2 0.0005631 81.594 By MS/MS 1 10.587 9.9447 NaN 1 Median 10.587 9.9447 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47693000 985340 46708000 47693000 985340 46708000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23340 4002 24336 123066 124195 124195 1 LVDLPLGLPFYK RFLGKLMAKAIMDFRLVDLPLGLPFYKWML DFRLVDLPLGLPFYKWMLRQETSLTSHDLF R L V Y K W 0 0 0 1 0 0 0 1 0 0 4 1 0 1 2 0 0 0 1 1 0 0 12 0 1373.7959 Q14669;H7C2Y1 Q14669 1713 1724 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 0.00087622 59.8 By MS/MS By matching By MS/MS By matching 1 1 4 3 0.84267 0.83825 7.5152 9 Median 0.84267 0.7945 NaN 1 0 Median 0.89714 0.77914 NaN 1 0 Median 0.79584 0.84185 4.788 4 0 Median NaN NaN NaN 0 0 Median 0.96489 0.95526 8.701 3 0 Plateau NaN NaN NaN 0 0 Median 8972300 4851300 4121000 1201300 634380 566950 815280 429050 386240 6116800 3315300 2801500 0 0 0 838920 472580 366340 0 0 0 23341 2886 24337 123067;123068;123069;123070;123071;123072;123073;123074;123075 124196;124197;124198;124199 124197 4 LVDMMER DLERGCHLLVATPGRLVDMMERGKIGLDFC LLVATPGRLVDMMERGKIGLDFCKYLVLDE R L V E R G 0 1 0 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 7 0 892.41466 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 326 332 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0031125 121.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 3 2 1.0958 0.95562 15.257 13 Median 1.0426 0.99145 7.2627 2 1 Median 1.0749 0.95482 17.37 4 0 Median 1.2351 1.2451 NaN 1 0 Median 1.2331 1.029 NaN 1 0 Median 1.2876 1.3037 18.8 3 0 Plateau 1.0981 0.92108 0.73955 2 0 Median 96886000 45734000 51151000 24162000 12366000 11796000 16958000 8642200 8315800 32268000 14557000 17711000 1620900 669680 951180 19370000 8307200 11063000 2506900 1192600 1314200 23342 263 24338 123076;123077;123078;123079;123080;123081;123082;123083;123084;123085;123086;123087;123088 124200;124201;124202;124203;124204;124205;124206;124207;124208;124209;124210;124211;124212 124203 13 LVDNFQHEENLLQQVASK QDKKSVESTCLCFARLVDNFQHEENLLQQV NFQHEENLLQQVASKDLLTNVQQLLVVTPP R L V S K D 1 0 2 1 0 3 2 0 1 0 3 1 0 1 0 1 0 0 0 2 0 0 18 0 2111.0647 Q14669 Q14669 629 646 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 4.1125E-09 97.095 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.0959 1.1432 23.641 6 Median 1.5948 1.5316 NaN 1 0 Median 0.88819 0.78236 NaN 1 0 Median 1.0649 1.1432 1.4027 2 0 Median 1.0885 0.99055 NaN 1 0 Median 1.2872 1.3588 NaN 1 0 Median NaN NaN NaN 0 0 Median 34171000 16241000 17929000 5061800 1990800 3071000 1718600 994940 723640 23865000 11699000 12166000 916620 477860 438750 2608700 1078300 1530400 0 0 0 23343 2886 24339 123089;123090;123091;123092;123093;123094 124213;124214;124215;124216 124214 4 LVDPERDMSLR ILSEEELSLLDEFYKLVDPERDMSLRLNEQ EFYKLVDPERDMSLRLNEQYEHASIHLWDL K L V L R L 0 2 0 2 0 0 1 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 11 1 1329.6711 Q14444;G3V153 Q14444 192 202 CAPRIN1 Caprin-1 yes no 2;3 6.1101E-05 76.143 By MS/MS By matching By matching 2 1 1 1.0407 1.1328 12.493 4 Median 1.0399 1.0662 1.5653 2 0 Median NaN NaN NaN 0 0 Median 1.0301 1.1903 NaN 1 0 Median 1.5759 1.3872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29822000 15118000 14704000 25880000 13063000 12817000 0 0 0 3643200 1914100 1729100 298370 140530 157830 0 0 0 0 0 0 23344 2878 24340 123095;123096;123097;123098 124217;124218;124219;124220 124217 4 LVDPLYSIK KTVKYFKGLMLVHNKLVDPLYSIKEKETEK MLVHNKLVDPLYSIKEKETEKSQSSKKPYS K L V I K E 0 0 0 1 0 0 0 0 0 1 2 1 0 0 1 1 0 0 1 1 0 0 9 0 1046.6012 P46926 P46926 265 273 GNPDA1 Glucosamine-6-phosphate isomerase 1 yes yes 2 0.016483 42.599 By MS/MS By matching By matching 2 1 1 1.1165 1.0322 23.265 4 Median 1.1165 1.0322 0.60424 2 0 Median 0.82904 0.71496 NaN 1 0 Median 1.2074 1.2462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50643000 23036000 27607000 48874000 22359000 26515000 248580 82661 165920 1520900 594580 926340 0 0 0 0 0 0 0 0 0 23345 2348 24341 123099;123100;123101;123102 124221;124222 124222 2 LVDPQEMLR EEVARGQGTGKPREKLVDPQEMLRLLGH__ GKPREKLVDPQEMLRLLGH___________ K L V L R L 0 1 0 1 0 1 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 9 0 1099.5696 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 479 487 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.0011047 85.212 By MS/MS 1 0.76356 0.75518 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76356 0.75518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9393400 5382300 4011100 0 0 0 0 0 0 9393400 5382300 4011100 0 0 0 0 0 0 0 0 0 23346 2102 24342 123103 124223;124224 124224 2 LVDPVAGSGGPGSR GDEEDEDEIIVPKKKLVDPVAGSGGPGSRF KLVDPVAGSGGPGSRFKGKHSLDSDEEEDD K L V S R F 1 1 0 1 0 0 0 4 0 0 1 0 0 0 2 2 0 0 0 2 0 0 14 0 1267.6521 O95400 O95400 27 40 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 2 1.0058E-05 90.434 By matching By matching By MS/MS By MS/MS 1 2 1 2 0.67043 0.6233 46.049 6 Median 0.75956 0.75789 NaN 1 0 Median 0.50798 0.43447 90.098 2 0 Median 0.62902 0.63116 NaN 1 0 Median 0.64703 0.56562 11.959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29256000 18727000 10529000 2470300 1483700 986690 8578600 6478300 2100400 5312900 3084700 2228200 12894000 7680300 5213400 0 0 0 0 0 0 23347 1771 24343 123104;123105;123106;123107;123108;123109 124225;124226;124227;124228;124229 124227 5 LVDQNIFSFYLSR VNNVLPVFDNLMQQKLVDQNIFSFYLSRDP QKLVDQNIFSFYLSRDPDAQPGGELMLGGT K L V S R D 0 1 1 1 0 1 0 0 0 1 2 0 0 2 0 2 0 0 1 1 0 0 13 0 1600.8249 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;H7C469;F8WD96;C9JH19 A0A1B0GW44 216 228 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.0010336 60.434 By MS/MS By MS/MS 1 5 1.5174 1.3689 68.574 6 Median 1.6353 1.5415 NaN 1 0 Median 1.4081 1.2157 72.801 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9889400 5469900 4419500 1846900 692330 1154600 8042500 4777600 3264900 0 0 0 0 0 0 0 0 0 0 0 0 23348 324 24344 123110;123111;123112;123113;123114;123115 124230;124231;124232 124231 3 LVDQSGPPHEPK LLEYARSHGFAAEFKLVDQSGPPHEPKFVY EFKLVDQSGPPHEPKFVYQAKVGGRWFPAV K L V P K F 0 0 0 1 0 1 1 1 1 0 1 1 0 0 3 1 0 0 0 1 0 0 12 0 1302.6568 P55265;A0A3B3IRQ9;A0A3B3ISX1 P55265 746 757 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 0.0026083 44.309 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 2 0.71886 0.66015 24.671 9 Median 0.71886 0.75522 NaN 1 0 Median 0.66291 0.57762 18.886 2 0 Median 0.77639 0.80652 53.187 2 0 Median NaN NaN NaN 0 0 Median 0.58655 0.60559 11.668 2 0 Median 0.8478 0.71358 2.796 2 0 Median 13490000 8269800 5220100 186630 118380 68251 1878500 1169400 709130 2297000 1294500 1002500 0 0 0 7505900 4881300 2624600 1621900 806200 815730 23349 2498 24345 123116;123117;123118;123119;123120;123121;123122;123123;123124 124233;124234;124235;124236;124237;124238;124239;124240 124238 8 LVDTAWLEIMTK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV LEKLVDTAWLEIMTKYAVGEECDFEVGKEK K L V T K Y 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 0 2 1 0 1 0 0 12 0 1418.7479 Q9UIG0 Q9UIG0 102 113 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0038247 45.137 By MS/MS 2 2.0566 1.6349 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0566 1.6349 NaN 1 0 Median 7254000 3333000 3921000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7254000 3333000 3921000 23350 4290 24346 123125;123126 124241 124241 1 LVDTFLEDVK QLTTGNGLFINESAKLVDTFLEDVKNLYHS NESAKLVDTFLEDVKNLYHSEAFSINFRDA K L V V K N 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 10 0 1177.6231 CON__P34955 CON__P34955 148 157 yes yes 2 0.0006381 96.331 By MS/MS By MS/MS By MS/MS 1 1 1 0.0085865 0.0079105 66.277 3 Median 0.0085865 0.0079105 NaN 1 1 Median 0.0041246 0.0034279 NaN 1 1 Median 0.013132 0.012689 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 186600000 185010000 1584100 105620000 104860000 762630 48648000 48389000 258670 32326000 31763000 562770 0 0 0 0 0 0 0 0 0 + 23351 763 24347 123127;123128;123129 124242;124243;124244;124245 124243 4 LVDTGDKFR AWKSLLDACESRRVRLVDTGDKFRFFSMVR ESRRVRLVDTGDKFRFFSMVRDLMLWMEDV R L V F R F 0 1 0 2 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 1 1049.5506 Q01082;A0A087WUZ3 Q01082 1907 1915 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0006295 116.73 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1064 1.0329 14.238 6 Median NaN NaN NaN 0 0 Median 1.3729 1.2707 NaN 1 0 Median 0.86526 1.0374 NaN 1 1 Median 1.01 0.95777 19.164 2 0 Median NaN NaN NaN 0 0 Median 1.1064 0.97891 6.9794 2 0 Median 26728000 12931000 13797000 0 0 0 12752000 5284300 7467700 7559800 4507500 3052300 3189100 1538800 1650200 0 0 0 3226700 1600200 1626400 23352 2681 24348 123130;123131;123132;123133;123134;123135;123136 124246;124247;124248;124249;124250;124251 124246 6 LVDYLEGIR NYHCYHEKDPDGCYRLVDYLEGIRKNFDEA PDGCYRLVDYLEGIRKNFDEAAKVLKFNCE R L V I R K 0 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 1 1 0 0 9 0 1076.5866 Q96BR5 Q96BR5 40 48 COA7 Cytochrome c oxidase assembly factor 7 yes yes 2 0.010786 63.565 By MS/MS 1 1.3157 1.2335 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3157 1.2335 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1535800 654230 881570 0 0 0 0 0 0 1535800 654230 881570 0 0 0 0 0 0 0 0 0 23353 3610 24349 123137 124252 124252 1 LVDYLEGIRK NYHCYHEKDPDGCYRLVDYLEGIRKNFDEA DGCYRLVDYLEGIRKNFDEAAKVLKFNCEE R L V R K N 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 1 1 0 0 10 1 1204.6816 Q96BR5 Q96BR5 40 49 COA7 Cytochrome c oxidase assembly factor 7 yes yes 3 0.00077916 57.348 By MS/MS By matching 1 1 1.6876 1.6729 13.003 2 Median 1.4574 1.526 NaN 1 0 Median 1.9541 1.834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7660700 3278100 4382600 6619400 2880500 3739000 1041300 397670 643610 0 0 0 0 0 0 0 0 0 0 0 0 23354 3610 24350 123138;123139 124253;124254 124254 2 LVEAEVHR LKCYLHETLETIINRLVEAEVHRLVVVDEN LETIINRLVEAEVHRLVVVDENDVVKGIVS R L V H R L 1 1 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 951.51378 F8VYY9;P54619;H0YHF8;H0YIC9;F8VZX1 F8VYY9 241 248 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 yes no 2 0.023052 44.447 By MS/MS By MS/MS By matching 1 1 1 1.0571 1.0277 15.452 3 Median 0.87355 0.84054 NaN 1 0 Median 1.3454 1.1389 NaN 1 0 Median 1.0571 1.0277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2538500 1239700 1298900 761360 385940 375420 1360800 638760 722040 416390 214960 201430 0 0 0 0 0 0 0 0 0 23355 1076 24351 123140;123141;123142 124255;124256;124257 124257 3 LVEALAAATEK LLFALKVLNMMPEEKLVEALAAATEKQKKA PEEKLVEALAAATEKQKKALEKLLPASS__ K L V E K Q 4 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1114.6234 Q9BRJ7;K7EIN2;K7ENA3 Q9BRJ7 188 198 NUDT16L1 Protein syndesmos yes no 2 0.00011427 129.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1.1091 0.93818 70.322 7 Median 4.0284 3.7569 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.99993 0.93818 NaN 1 0 Median 0.85558 0.71026 NaN 1 0 Median 1.1605 1.1853 NaN 1 1 Median 1.1091 0.91612 81.801 3 1 Median 124410000 51469000 72939000 14012000 2199600 11812000 0 0 0 58744000 28603000 30140000 16881000 8484700 8395800 23793000 7979200 15813000 10979000 4202500 6776900 23356 3796 24352 123143;123144;123145;123146;123147;123148;123149;123150 124258;124259;124260;124261;124262;124263;124264;124265 124263 8 LVEALCAEHQINLIK LCVLASNCDEPMYVKLVEALCAEHQINLIK LVEALCAEHQINLIKVDDNKKLGEWVGLCK K L V I K V 2 0 1 0 1 1 2 0 1 2 3 1 0 0 0 0 0 0 0 1 0 0 15 0 1749.9447 P25398 P25398 64 78 RPS12 40S ribosomal protein S12 yes yes 2;3 2.2735E-09 134.13 By MS/MS By MS/MS By MS/MS 2 3 2 1.1529 0.94998 28.898 7 Median 0.74229 0.73303 50.277 2 0 Median 1.1566 0.94998 15.617 3 0 Plateau 1.198 1.1397 0.68178 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121310000 55946000 65368000 8975600 4417300 4558300 46671000 21142000 25529000 65667000 30387000 35281000 0 0 0 0 0 0 0 0 0 23357 2132 24353 123151;123152;123153;123154;123155;123156;123157 124266;124267;124268;124269;124270;124271;124272;124273 124270 8 LVEARPMIHELLTEGR LIGDLCTAFGKDVLKLVEARPMIHELLTEG VEARPMIHELLTEGRRSKTNKAKTLATWAT K L V G R R 1 2 0 0 0 0 3 1 1 1 3 0 1 0 1 0 1 0 0 1 0 0 16 1 1863.0037 Q14974;J3KTM9 Q14974 836 851 KPNB1 Importin subunit beta-1 yes no 3;4 4.4489E-05 55.173 By MS/MS By MS/MS By matching 3 2 1 0.83908 0.9133 34.825 6 Median 0.89455 0.91718 44.672 3 1 Median NaN NaN NaN 0 0 Median 0.90077 1.0408 19.086 2 0 Median NaN NaN NaN 0 0 Median 0.63078 0.68536 NaN 1 0 Median NaN NaN NaN 0 0 Median 46204000 25385000 20819000 12440000 6749500 5690100 0 0 0 30863000 17228000 13635000 0 0 0 2901500 1407500 1494000 0 0 0 23358 2904 24354;24355 123158;123159;123160;123161;123162;123163 124274;124275;124276;124277 124276 1589 4 LVEDIFQQNVGK VRTVQLIKDLAREIRLVEDIFQQNVGKTSN EIRLVEDIFQQNVGKTSNIFGLQRIFPAGS R L V G K T 0 0 1 1 0 2 1 1 0 1 1 1 0 1 0 0 0 0 0 2 0 0 12 0 1388.73 Q9UPP1;H0Y3N9;H0Y589 Q9UPP1 475 486 PHF8 Histone lysine demethylase PHF8 yes no 2 4.0101E-06 122.13 By MS/MS 1 0.88197 0.95395 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88197 0.95395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5496100 2961500 2534600 0 0 0 0 0 0 5496100 2961500 2534600 0 0 0 0 0 0 0 0 0 23359 1143 24356 123164 124278;124279 124278 2 LVEDMENK ETVSDCSPHIANIGRLVEDMENKIRSTLNE HIANIGRLVEDMENKIRSTLNEIYFGKTKD R L V N K I 0 0 1 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 976.45355 B1AK87;B1AK88;P47756 B1AK87 204 211 CAPZB F-actin-capping protein subunit beta yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2624 1.0611 6.5976 5 Median 1.1278 1.0534 NaN 1 0 Median 1.2988 1.1027 5.4428 2 0 Median 1.0257 0.9805 NaN 1 0 Median 1.3636 1.1477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25614000 11073000 14542000 7929200 3692700 4236500 11004000 4576500 6427400 2708100 1143000 1565100 3973300 1660600 2312700 0 0 0 0 0 0 23360 566 24357 123165;123166;123167;123168;123169 124280;124281;124282;124283;124284;124285 124281 6 LVEDMENKIR ETVSDCSPHIANIGRLVEDMENKIRSTLNE ANIGRLVEDMENKIRSTLNEIYFGKTKDIV R L V I R S 0 1 1 1 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 10 1 1245.6387 B1AK87;B1AK88;P47756 B1AK87 204 213 CAPZB F-actin-capping protein subunit beta yes no 2;3 1.3769E-06 163.99 By MS/MS By MS/MS By matching By MS/MS 5 4 1 3 1.1655 1.1707 27.541 13 Median 1.1583 1.1707 20.23 5 2 Median 1.2927 1.1834 31.606 4 2 Median 1.0813 1.1114 NaN 1 0 Median 1.3301 1.1774 40.957 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102130000 40688000 61445000 55441000 26022000 29419000 20527000 7250400 13276000 2177400 855530 1321900 23988000 6560300 17428000 0 0 0 0 0 0 23361 566 24358;24359 123170;123171;123172;123173;123174;123175;123176;123177;123178;123179;123180;123181;123182 124286;124287;124288;124289;124290;124291;124292;124293;124294;124295;124296 124287 221 11 LVEDNPSSLSLVEIYK FFTVPRVVAVSPQMRLVEDNPSSLSLVEIY VEDNPSSLSLVEIYKQRCAKKGIEHDNPIS R L V Y K Q 0 0 1 1 0 0 2 0 0 1 3 1 0 0 1 3 0 0 1 2 0 0 16 0 1804.9458 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3572 3587 TRRAP Transformation/transcription domain-associated protein yes no 2 2.7209E-10 107.85 By MS/MS 1 0.80741 0.8617 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80741 0.8617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20157000 10592000 9565600 0 0 0 0 0 0 20157000 10592000 9565600 0 0 0 0 0 0 0 0 0 23362 991 24360 123183 124297;124298 124298 2 LVEEELLK GRSHLEPEEKQALKRLVEEELLKMQVDEAA EKQALKRLVEEELLKMQVDEAASREDKLDL R L V L K M 0 0 0 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 971.55391 Q9BW71 Q9BW71 53 60 HIRIP3 HIRA-interacting protein 3 yes yes 2 0.0072183 67.981 By matching By MS/MS By matching 1 1 1 0.95117 0.97578 18.59 3 Median 0.9423 0.89013 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95117 0.97578 NaN 1 0 Median 1.4818 1.2732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13753000 7434800 6318100 4674200 3155100 1519000 0 0 0 8519800 4044800 4475000 558950 234920 324020 0 0 0 0 0 0 23363 3865 24361 123184;123185;123186 124299;124300 124300 2 LVEEEVNIPNRR REKELSIHFVPGSCRLVEEEVNIPNRRVLV SCRLVEEEVNIPNRRVLVTGATGLLGRAVH R L V R R V 0 2 2 0 0 0 3 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 12 1 1466.7841 Q9NZL9;E5RJR3 Q9NZL9 19 30 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 3 0.00027918 56.225 By MS/MS 1 1.0375 0.96887 NaN 1 Median NaN NaN NaN 0 0 Median 1.0375 0.96887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5639400 2742200 2897100 0 0 0 5639400 2742200 2897100 0 0 0 0 0 0 0 0 0 0 0 0 23364 4191 24362 123187 124301;124302 124302 2 LVEEGVPK AKIGFSAADAVTGLKLVEEGVPKEHLALLA DAVTGLKLVEEGVPKEHLALLAVPMVPLQI K L V P K E 0 0 0 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 869.48583 O00400;H7C562 O00400 335 342 SLC33A1 Acetyl-coenzyme A transporter 1 yes no 2 0.030021 39.218 By matching By MS/MS 1 2 0.94742 0.83241 3.4306 3 Median 0.9089 0.83241 NaN 1 0 Median 0.98993 0.83501 4.845 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 194410000 95801000 98608000 86033000 42507000 43526000 108380000 53294000 55082000 0 0 0 0 0 0 0 0 0 0 0 0 23365 1459 24363 123188;123189;123190 124303 124303 1 LVEEHLDSEIQK MFSKVLEHQLLQTTKLVEEHLDSEIQKLDQ TTKLVEEHLDSEIQKLDQMDEDELERLKEK K L V Q K L 0 0 0 1 0 1 3 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1438.7304 F8WBV5;G3XAJ4;F8WCJ3;B8ZZX4;O14530 F8WBV5 24 35 TXNDC9 Thioredoxin domain-containing protein 9 yes no 2;3 0.004109 66.27 By MS/MS 2 1.1471 0.9719 0.20662 2 Median NaN NaN NaN 0 0 Median 1.1471 0.9719 0.20662 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4959000 2362400 2596500 0 0 0 4959000 2362400 2596500 0 0 0 0 0 0 0 0 0 0 0 0 23366 652 24364 123191;123192 124304;124305 124305 2 LVEFMASGPIR QRFYREHEGRFFYQRLVEFMASGPIRAYIL FYQRLVEFMASGPIRAYILAHKDAIQLWRT R L V I R A 1 1 0 0 0 0 1 1 0 1 1 0 1 1 1 1 0 0 0 1 0 0 11 0 1218.6431 C9JQB1;C9J9V6;A0A0C4DG91;O75414;C9J1J2 C9JQB1 27 37 NME6 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase 6 yes no 2 0.00054228 67.563 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1.0541 0.98917 17.857 7 Median 0.98525 0.95211 5.4001 2 0 Median 1.2012 1.0218 25.705 2 0 Median 0.96089 0.92119 NaN 1 0 Median 1.3557 1.1895 23.64 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11351000 5481200 5869800 4770500 2090700 2679900 702490 346910 355580 5364900 2822900 2542000 513130 220730 292400 0 0 0 0 0 0 23367 236 24365 123193;123194;123195;123196;123197;123198;123199 124306;124307;124308;124309;124310 124307 5 LVEFSAFLEQQR VPAWQGRSIGTTKLRLVEFSAFLEQQRDPD KLRLVEFSAFLEQQRDPDSYNKHLFVHIGH R L V Q R D 1 1 0 0 0 2 2 0 0 0 2 0 0 2 0 1 0 0 0 1 0 0 12 0 1465.7565 H0YE88;P28347;H0YEJ9;E9PKB7 H0YE88 218 229 TEAD1 Transcriptional enhancer factor TEF-1 yes no 2 5.1455E-06 100.48 By MS/MS 1 0.93652 0.9397 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93652 0.9397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5330200 2710500 2619700 0 0 0 0 0 0 5330200 2710500 2619700 0 0 0 0 0 0 0 0 0 23368 1178 24366 123200 124311;124312 124312 2 LVEFSAFLEQQRDPDSYNK VPAWQGRSIGTTKLRLVEFSAFLEQQRDPD SAFLEQQRDPDSYNKHLFVHIGHANHSYSD R L V N K H 1 1 1 2 0 2 2 0 0 0 2 1 0 2 1 2 0 0 1 1 0 0 19 1 2285.0964 H0YE88;P28347;E9PKB7 H0YE88 218 236 TEAD1 Transcriptional enhancer factor TEF-1 yes no 3 0.023968 23.683 By MS/MS 1 0.27531 0.27937 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27531 0.27937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14363000 10298000 4065200 0 0 0 0 0 0 14363000 10298000 4065200 0 0 0 0 0 0 0 0 0 23369 1178 24367 123201 124313 124313 1 LVEGESDNR EIRVGCKYQAEIPDRLVEGESDNRNQQKME AEIPDRLVEGESDNRNQQKMEMKVWDPDNP R L V N R N 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1017.4727 O94776 O94776 161 169 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0060753 55.676 By MS/MS By matching 2 1 1.0035 1.0218 22.909 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0836 1.0987 10.265 2 0 Median 0.90377 0.75412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11761000 5613700 6147300 0 0 0 0 0 0 11546000 5512600 6033500 214910 101090 113810 0 0 0 0 0 0 23370 1723 24368 123202;123203;123204 124314;124315 124315 2 LVEGFYPAPGLK VAIRDGAYSLFDNSKLVEGFYPAPGLKTFL NSKLVEGFYPAPGLKTFLNMFVDSNQDARR K L V L K T 1 0 0 0 0 0 1 2 0 0 2 1 0 1 2 0 0 0 1 1 0 0 12 0 1289.702 O60244 O60244 949 960 MED14 Mediator of RNA polymerase II transcription subunit 14 yes yes 2 0.024765 48.796 By MS/MS 1 1.2798 1.3744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2798 1.3744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6205100 2204400 4000700 0 0 0 0 0 0 6205100 2204400 4000700 0 0 0 0 0 0 0 0 0 23371 1606 24369 123205 124316 124316 1 LVEGILHAPDAGWGNLVYVVNYPK LRYRNPVSQCMRGVRLVEGILHAPDAGWGN DAGWGNLVYVVNYPKDNKRKMDETDASSAV R L V P K D 2 0 2 1 0 0 1 3 1 1 3 1 0 0 2 0 0 1 2 4 0 0 24 0 2623.3799 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;A0A087WX29;K7EN94;A0A0A0N0M3;K7EJM5;A0A1W2PNU8;A0A0A0MSV7;K7EJ99 Q13148 56 79 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2;3 4.6468E-24 104.63 By matching By MS/MS By matching By matching 2 3 1 1 0.65468 0.62561 30.733 7 Median NaN NaN NaN 0 0 Median 0.54728 0.46714 51.301 2 0 Median 0.65391 0.59607 5.8564 3 0 Plateau 0.92481 0.82463 NaN 1 0 Median 0.8083 0.7817 NaN 1 0 Median NaN NaN NaN 0 0 Median 61198000 35787000 25410000 0 0 0 4684200 2545900 2138300 55634000 32761000 22873000 361160 192150 169010 517750 287750 230000 0 0 0 23372 2789 24370 123206;123207;123208;123209;123210;123211;123212 124317;124318;124319;124320;124321;124322;124323 124319 7 LVEGPPPPPEPPK RFGIMEKVYCHYFVKLVEGPPPPPEPPKTA VKLVEGPPPPPEPPKTAVAHAKEYIQQLRS K L V P K T 0 0 0 0 0 0 2 1 0 0 1 1 0 0 7 0 0 0 0 1 0 0 13 0 1352.734 J3KQY1;E7ESL0;Q9NWU5 J3KQY1 198 210 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 0.00077673 73.067 By MS/MS By MS/MS By matching 1 1 1 0.45566 0.47414 77.967 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2843 0.27319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73031 0.82288 NaN 1 0 Median NaN NaN NaN 0 0 Median 6486300 4077100 2409200 0 0 0 0 0 0 2275000 1708600 566370 0 0 0 4211400 2368600 1842800 0 0 0 23373 887 24371 123213;123214;123215 124324;124325 124324 2 LVEHGLNETIHIR SHLISIIKDDLEDIKLVEHGLNETIHIRGG IKLVEHGLNETIHIRGGVFS__________ K L V I R G 0 1 1 0 0 0 2 1 2 2 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1529.8314 Q7Z3B4 Q7Z3B4 490 502 NUP54 Nucleoporin p54 yes yes 2;3 2.7231E-07 129.71 By MS/MS By MS/MS By matching 1 3 1 1.2107 1.0148 18.141 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0245 1.0148 NaN 1 0 Median 1.4373 1.1996 25.147 3 0 Median NaN NaN NaN 0 0 Median 1.2107 0.98192 NaN 1 0 Median 46815000 22678000 24137000 0 0 0 0 0 0 28383000 14886000 13497000 17422000 7322800 10099000 0 0 0 1009700 469070 540640 23374 3239 24372 123216;123217;123218;123219;123220 124326;124327;124328;124329;124330;124331;124332 124329 7 LVEIAQVPK DVKGGTLTQYEGKLRLVEIAQVPKAHVDEF YEGKLRLVEIAQVPKAHVDEFKSVSKFKIF R L V P K A 1 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 9 0 995.60153 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 304 312 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.0035164 64.567 By MS/MS By MS/MS By matching 1 1 1 1.0489 0.91942 3.1907 3 Median 1.0282 0.95038 NaN 1 0 Median 1.0489 0.89164 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0568 0.91942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24362000 11557000 12805000 17577000 8332300 9245100 6127700 2882200 3245500 0 0 0 656520 342260 314260 0 0 0 0 0 0 23375 86 24373 123221;123222;123223 124333;124334;124335 124333 3 LVEIDNGK YSEELRETKRRHETRLVEIDNGKQREFESR KRRHETRLVEIDNGKQREFESRLADALQEL R L V G K Q 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 P02545;H0YAB0;Q3BDU5 P02545 226 233 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0023931 119.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 1.1912 1.1695 12.327 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.163 1.185 10.134 3 0 Median 1.411 1.2021 12.732 3 0 Median 1.1161 1.1046 10.483 3 0 Median 1.4332 1.1849 20.338 2 0 Median 57276000 25689000 31587000 0 0 0 0 0 0 27834000 12474000 15360000 3773300 1532900 2240400 20587000 9726900 10860000 5081100 1954500 3126500 23376 1834;3010 24374 123224;123225;123226;123227;123228;123229;123230;123231;123232;123233;123234 124336;124337;124338;124339;124340;124341;124342;124343;124344;124345;124346;124347;124348;124349 124338 14 LVEIDNGKQR YSEELRETKRRHETRLVEIDNGKQREFESR RHETRLVEIDNGKQREFESRLADALQELRA R L V Q R E 0 1 1 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1170.6357 P02545;H0YAB0;Q3BDU5 P02545 226 235 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0016895 83.265 By MS/MS By MS/MS 2 1 1.0231 1.055 1.9117 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99027 1.0597 0.62493 2 0 Median 1.1217 1.0261 NaN 1 0 Median 7925100 3644200 4280900 0 0 0 0 0 0 0 0 0 0 0 0 6839300 3191200 3648000 1085900 452960 632930 23377 1834;3010 24375 123235;123236;123237 124350;124351;124352 124352 3 LVEIVHPSQEEDR QDVLNWLNEEKIIQRLVEIVHPSQEEDRHS QRLVEIVHPSQEEDRHSNASQSLCEIVRLS R L V D R H 0 1 0 1 0 1 3 0 1 1 1 0 0 0 1 1 0 0 0 2 0 0 13 0 1549.7736 H7BXH2;E9PKF6;Q5H9R7;E9PK08 H7BXH2 195 207 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2;3 5.1681E-08 120.09 By MS/MS By MS/MS 2 1 0.59757 0.54542 7.0355 3 Median 0.58427 0.56468 4.9063 2 2 Median 0.59757 0.50788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14410000 9006300 5403500 10734000 6732000 4002300 3675400 2274200 1401200 0 0 0 0 0 0 0 0 0 0 0 0 23378 946 24376 123238;123239;123240 124353;124354;124355 124355 3 LVEKGETDLIQK EKYKVLPRIHDVLCKLVEKGETDLIQKAMD LCKLVEKGETDLIQKAMDFVSQEQGEMVML K L V Q K A 0 0 0 1 0 1 2 1 0 1 2 2 0 0 0 0 1 0 0 1 0 0 12 1 1371.7609 P42704 P42704 865 876 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 6.4738E-09 175.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1 3 1.1106 1.2731 22.216 12 Median 1.0433 1.0886 7.4281 3 0 Plateau 1.5147 1.3994 2.4972 2 0 Median 1.1095 1.2731 1.0362 2 0 Median 1.5886 1.5133 NaN 1 0 Median 1.2947 1.3667 NaN 1 0 Median 1.2964 1.1647 32.065 3 0 Plateau 103670000 45262000 58409000 45522000 21544000 23978000 40761000 15997000 24764000 9906000 4649300 5256700 1271100 322980 948130 1920000 991490 928510 4292500 1757800 2534700 23379 2315 24377 123241;123242;123243;123244;123245;123246;123247;123248;123249;123250;123251;123252 124356;124357;124358;124359;124360;124361;124362;124363;124364;124365;124366;124367 124364 12 LVEKPSPLTLAPHDFANIK LQNCTLELATLGDLKLVEKPSPLTLAPHDF PSPLTLAPHDFANIKANVKVASTENGIIFG K L V I K A 2 0 1 1 0 0 1 0 1 1 3 2 0 1 3 1 1 0 0 1 0 0 19 1 2089.1572 P53618 P53618 768 786 COPB1 Coatomer subunit beta yes yes 3;4 0.00055789 32.181 By MS/MS By matching 2 2 0.70707 0.71263 19.871 4 Median 0.63397 0.66532 13.579 2 1 Median 0.8616 0.82008 23.725 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19367000 12066000 7301100 17215000 10980000 6234300 2152300 1085500 1066800 0 0 0 0 0 0 0 0 0 0 0 0 23380 2472 24378 123253;123254;123255;123256 124368;124369 124368 2 LVELCVAK WKFEIHRCIINNTHRLVELCVAKLSQDWFP IINNTHRLVELCVAKLSQDWFPLLELLAMA R L V A K L 1 0 0 0 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 930.52084 Q93008;O00507 Q93008 155 162 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0074447 67.032 By MS/MS 2 1.4618 1.2752 17.184 2 Median NaN NaN NaN 0 0 Median 1.4618 1.2752 17.184 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8786000 3412400 5373600 0 0 0 8786000 3412400 5373600 0 0 0 0 0 0 0 0 0 0 0 0 23381 3573 24379 123257;123258 124370 124370 1 LVELLMHNDYK NDKIQAVIDAGVCRRLVELLMHNDYKVVSP VCRRLVELLMHNDYKVVSPALRAVGNIVTG R L V Y K V 0 0 1 1 0 0 1 0 1 0 3 1 1 0 0 0 0 0 1 1 0 0 11 0 1373.7013 P52294;C9JYI4;O60684;Q5TFJ7;O15131 P52294 301 311 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 2;3 4.8407E-05 111.65 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 3 2 1 1 1.0052 0.91256 37.561 11 Median 0.62647 0.58879 81.976 2 1 Median 1.0147 0.91366 31.712 2 0 Median 0.85662 0.82904 11.658 3 2 Plateau 1.2717 1.0971 30.814 2 0 Median 1.0052 0.95798 NaN 1 0 Median 1.3394 1.1303 NaN 1 0 Median 107390000 62343000 45052000 34320000 23046000 11274000 4167500 1863900 2303600 62371000 34335000 28037000 1068500 484020 584500 4211900 1997400 2214600 1255200 616600 638590 23382 2449;1626;1524 24380;24381 123259;123260;123261;123262;123263;123264;123265;123266;123267;123268;123269 124371;124372;124373;124374;124375;124376 124374 491 6 LVELNEDVRPHIR KNDNELLKLIPFLEKLVELNEDVRPHIRDR EKLVELNEDVRPHIRDRFRLHDLLPPD___ K L V I R D 0 2 1 1 0 0 2 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 1 1588.8685 Q05D32 Q05D32 442 454 CTDSPL2 CTD small phosphatase-like protein 2 yes yes 3;4 0.0002348 66.498 By MS/MS By MS/MS 2 1 0.82864 0.81226 8.7889 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70233 0.76332 NaN 1 0 Median 0.97765 0.86434 NaN 1 1 Median 27996000 12265000 15731000 0 0 0 0 0 0 0 0 0 0 0 0 24422000 10265000 14156000 3574400 2000000 1574400 23383 2720 24382 123270;123271;123272 124377;124378;124379 124377 3 LVELQNTR NRRLGEWDLPEAVQRLVELQNTRVPNAEEI LPEAVQRLVELQNTRVPNAEEIF_______ R L V T R V 0 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 971.53999 Q9BW92;U3KQG0;F6S7Q7 Q9BW92 703 710 TARS2 Threonine--tRNA ligase, mitochondrial yes no 2 0.023122 44.395 By MS/MS 1 2.2574 1.9783 NaN 1 Median NaN NaN NaN 0 0 Median 2.2574 1.9783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1610300 758100 852230 0 0 0 1610300 758100 852230 0 0 0 0 0 0 0 0 0 0 0 0 23384 3867 24383 123273 124380 124380 1 LVELTQK CDRCVANNQVETLEKLVELTQKLFECDRDQ NQVETLEKLVELTQKLFECDRDQMYYNLLK K L V Q K L 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 P42704;A0A0C4DG51;Q9NP80 P42704 942 948 LRPPRC;PNPLA8 Leucine-rich PPR motif-containing protein, mitochondrial;Calcium-independent phospholipase A2-gamma yes no 2 0.00777 88.029 By MS/MS By MS/MS By matching 1 2 1 1.7489 1.4757 47.596 4 Median 1.1156 1.107 NaN 1 0 Median 2.2505 1.9598 67.425 2 0 Median NaN NaN NaN 0 0 Median 2.1181 1.79 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26994000 11033000 15961000 2466600 1135600 1331000 23966000 9690500 14276000 0 0 0 561260 207020 354240 0 0 0 0 0 0 23385 2315 24384 123274;123275;123276;123277 124381;124382;124383 124383 3 LVEMASSLAIR AICHPEEQQLSFIERLVEMASSLAIREWRR FIERLVEMASSLAIREWRRLPHVVSHVHTP R L V I R E 2 1 0 0 0 0 1 0 0 1 2 0 1 0 0 2 0 0 0 1 0 0 11 0 1188.6536 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2889 2899 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00019975 96.331 By matching By MS/MS By MS/MS 1 2 2 1.1104 1.0669 45.063 5 Median NaN NaN NaN 0 0 Median 0.47848 0.40369 NaN 1 0 Median 1.0595 1.1231 7.2524 2 0 Median 1.2183 1.0587 11.668 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21849000 10263000 11587000 0 0 0 1568900 935110 633800 17509000 8080800 9428500 2770900 1246700 1524200 0 0 0 0 0 0 23386 991 24385;24386 123278;123279;123280;123281;123282 124384;124385;124386 124386 343 3 LVEQAFR GKGSFWRIDPASEAKLVEQAFRKRRQRGVS IDPASEAKLVEQAFRKRRQRGVSCFRTPFG K L V F R K 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 861.47085 P85037 P85037 389 395 FOXK1 Forkhead box protein K1 yes yes 2 0.0026877 118.06 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1.1269 1.0534 23.125 6 Median 1.0908 1.0836 NaN 1 0 Median 1.3811 1.1969 NaN 1 0 Median 0.95351 1.0241 NaN 1 0 Median 0.93323 0.80779 30.652 2 0 Median NaN NaN NaN 0 0 Median 1.4019 1.2326 NaN 1 0 Median 11296000 5236800 6059400 1183400 543260 640120 2864800 1191000 1673900 3265300 1671700 1593600 3564700 1662500 1902200 0 0 0 418020 168440 249570 23387 2669 24387 123283;123284;123285;123286;123287;123288 124387;124388 124387 2 LVEQHGSDIWWTLPPEQLLPK DEYLINSQTTEHIVKLVEQHGSDIWWTLPP SDIWWTLPPEQLLPKEVLSEVGGPDALEYV K L V P K E 0 0 0 1 0 2 2 1 1 1 4 1 0 0 3 1 1 2 0 1 0 0 21 0 2485.3005 Q9NSE4 Q9NSE4 556 576 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3 0.026271 13.592 By MS/MS 1 0.49583 0.49199 NaN 1 Median 0.49583 0.49199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470800 1696100 774670 2470800 1696100 774670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23388 4103 24388 123289 124389 124389 1 LVEQLKEER LGSEGKVEEAQGMMKLVEQLKEERELLRST AQGMMKLVEQLKEERELLRSTTSTIESFAA K L V E R E 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1142.6295 J3KPP4;O95232 J3KPP4 161 169 LUC7L3 Luc7-like protein 3 yes no 2 0.00070953 144.12 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 3 3 1.2616 1.262 10.106 10 Median 1.4054 1.4235 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.196 1.2733 2.9064 2 0 Median 1.3955 1.3297 18.805 2 0 Median 1.0874 1.1411 1.8586 2 0 Median 1.4129 1.2767 7.7731 3 0 Median 39899000 17211000 22688000 1616800 491650 1125200 0 0 0 7059100 3224200 3835000 2436700 995950 1440700 22479000 9925300 12553000 6307900 2574300 3733600 23389 1309 24389 123290;123291;123292;123293;123294;123295;123296;123297;123298;123299;123300 124390;124391;124392;124393;124394;124395;124396;124397;124398;124399 124396 10 LVEQYTK DFLRPQHSLFNYFTKLVEQYTKILIPPKGL SLFNYFTKLVEQYTKILIPPKGLFSKLKKE K L V T K I 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 879.47018 Q15459 Q15459 211 217 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.00777 88.029 By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 2 1.1766 1.1378 13.399 7 Median 1.1788 1.1975 NaN 1 0 Median 1.1907 1.0388 2.3019 2 0 Median 1.1638 1.2508 NaN 1 0 Median 1.0463 0.88134 NaN 1 0 Median 1.1616 1.2155 9.3331 2 0 Median NaN NaN NaN 0 0 Median 19229000 9419300 9810200 641140 305200 335940 8540100 4256700 4283400 2339000 1047900 1291100 1559100 776750 782320 6150100 3032800 3117300 0 0 0 23390 2954 24390 123301;123302;123303;123304;123305;123306;123307 124400;124401 124400 2 LVESDAEAEAVR KANPHNYDAWFDYLRLVESDAEAEAVREVY YLRLVESDAEAEAVREVYERAIANVPPIQE R L V V R E 3 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1287.6307 Q5JY65;Q9BZJ0 Q5JY65 488 499 CRNKL1 Crooked neck-like protein 1 yes no 2 3.6707E-06 122.26 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1388 0.95385 9.9637 4 Median NaN NaN NaN 0 0 Median 1.2493 1.0832 NaN 1 0 Median 0.85512 0.86988 NaN 1 0 Median 1.0507 0.90543 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2343 1.0049 NaN 1 0 Median 20162000 10199000 9963700 0 0 0 2673300 1204600 1468700 12532000 6640100 5891500 3558000 1626300 1931700 0 0 0 1399500 727790 671740 23391 3061 24391 123308;123309;123310;123311 124402;124403;124404;124405;124406;124407;124408 124402 7 LVESGHYASQQIR NVYVNINRIMSVANRLVESGHYASQQIRQI NRLVESGHYASQQIRQIASQLEQEWKAFAA R L V I R Q 1 1 0 0 0 2 1 1 1 1 1 0 0 0 0 2 0 0 1 1 0 0 13 0 1486.7528 E7EWP2;O75962;F5H228;E7EPJ7 E7EWP2 349 361 TRIO Triple functional domain protein yes no 3 0.00876 26.627 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 1 1.1306 0.9841 22.511 5 Median 1.1306 1.1451 NaN 1 0 Median 0.89797 0.77354 NaN 1 0 Median 1.2665 1.4167 NaN 1 0 Median 1.0994 0.95418 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1805 0.9841 NaN 1 0 Median 5587300 2459000 3128300 2248000 1017400 1230600 720040 418870 301180 700520 258040 442480 397400 176450 220950 0 0 0 1521300 588200 933110 23392 903 24392 123312;123313;123314;123315;123316 124409;124410;124411 124410 3 LVESLPQEIK IKNYIQGINLVQAKKLVESLPQEIKANVAK VQAKKLVESLPQEIKANVAKAEAEKIKAAL K L V I K A 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1154.6547 B4DLN1 B4DLN1 164 173 no no 2 0.00047459 115.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.261 1.0538 14.192 6 Median 0.93955 0.88067 NaN 1 0 Median 1.2905 1.1053 NaN 1 0 Median 0.98278 0.92218 NaN 1 0 Median 1.3648 1.1229 15.731 2 0 Median NaN NaN NaN 0 0 Median 1.5053 1.1941 NaN 1 0 Median 179980000 87347000 92632000 81764000 41812000 39951000 9126300 4063100 5063200 67989000 33181000 34808000 19609000 7746900 11862000 0 0 0 1491000 543520 947510 23393 598 24393 123317;123318;123319;123320;123321;123322 124412;124413;124414;124415;124416;124417;124418;124419;124420 124414 9 LVETLEDQELK EELRQHAACKLDLQKLVETLEDQELKENVE DLQKLVETLEDQELKENVEIICNLQQLITQ K L V L K E 0 0 0 1 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1315.6871 O95239;Q2VIQ3 O95239 450 460 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.00013616 144.77 By MS/MS By MS/MS 1 2 1.1353 1.1091 8.8146 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0312 1.1091 NaN 1 1 Median 1.2103 1.0712 12.139 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14776000 6883300 7892400 0 0 0 0 0 0 6858700 3350500 3508200 7917000 3532900 4384200 0 0 0 0 0 0 23394 1757 24394 123323;123324;123325 124421;124422;124423;124424;124425 124424 5 LVEVDSGR YEEEINETRRKHETRLVEVDSGRQIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM R L V G R Q 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 873.4556 P20700;E9PBF6;A0A0D9SFE5 P20700 227 234 LMNB1 Lamin-B1 yes no 2 0.0023085 125.25 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 5 1.4136 1.141 101.18 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95994 0.9674 NaN 1 0 Median 1.5109 1.2615 NaN 1 0 Median 0.85635 0.85395 152.84 4 1 Median 1.5482 1.2857 8.514 5 3 Median 169360000 85589000 83773000 0 0 0 0 0 0 33225000 16626000 16599000 1914900 735380 1179600 101830000 55576000 46251000 32395000 12652000 19744000 23395 2084 24395 123326;123327;123328;123329;123330;123331;123332;123333;123334;123335;123336;123337 124426;124427;124428;124429;124430;124431;124432;124433;124434;124435;124436;124437;124438;124439;124440 124426 15 LVEVDSSR FEEEVRETRRRHERRLVEVDSSRQQEYDFK RRRHERRLVEVDSSRQQEYDFKMAQALEEL R L V S R Q 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 8 0 903.46616 Q03252 Q03252 241 248 LMNB2 Lamin-B2 yes yes 2 0.0078785 85.212 By MS/MS By MS/MS By MS/MS 1 3 2 0.9077 0.94993 12.831 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94477 0.96818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86203 0.91437 2.7025 2 1 Median 1.4689 1.1954 NaN 1 0 Median 13956000 6706700 7248900 0 0 0 0 0 0 7269700 3522300 3747400 0 0 0 5656300 2762800 2893500 1029600 421580 608050 23396 2709 24396 123338;123339;123340;123341;123342;123343 124441;124442;124443;124444 124442 4 LVEVNGVNVEGETHHQVVQR PGSPAEAAALRAGDRLVEVNGVNVEGETHH GVNVEGETHHQVVQRIKAVEGQTRLLVVDQ R L V Q R I 0 1 2 0 0 2 3 2 2 0 1 0 0 0 0 0 1 0 0 6 0 0 20 0 2242.1454 Q15599 Q15599 56 75 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes yes 3;4 1.6488E-19 118.24 By MS/MS By MS/MS 2 2 1.0783 1.1388 15.418 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0783 1.1797 5.3907 2 0 Median 1.1418 0.99337 19.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54313000 25715000 28598000 0 0 0 0 0 0 48604000 23019000 25585000 5709200 2695900 3013200 0 0 0 0 0 0 23397 2958 24397 123344;123345;123346;123347 124445;124446;124447;124448;124449;124450 124448 6 LVEVPNDGGPLGIHVVPFSAR ______________________________ DGGPLGIHVVPFSARGGRTLGLLVKRLEKG K L V A R G 1 1 1 1 0 0 1 3 1 1 2 0 0 1 3 1 0 0 0 4 0 0 21 0 2172.1691 F5GZI3;Q5VWU8;Q5VWV2;Q8TEW0 F5GZI3 4 24 PARD3 Partitioning defective 3 homolog yes no 3 0.01443 17.369 By MS/MS 1 0.69036 0.74358 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69036 0.74358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 959760 600780 358980 0 0 0 0 0 0 959760 600780 358980 0 0 0 0 0 0 0 0 0 23398 1015 24398 123348 124451 124451 1 LVEYDIDEVVYDEDSPYQNIK RGGAIDRYWPTADGRLVEYDIDEVVYDEDS DEVVYDEDSPYQNIKILHSKQFGNILILSG R L V I K I 0 0 1 4 0 1 3 0 0 2 1 1 0 0 1 1 0 0 3 3 0 0 21 0 2545.1748 P52788;H7C2R7 P52788 131 151 SMS Spermine synthase yes no 3 5.9681E-07 47.397 By MS/MS By matching 1 1 0.78944 0.7743 29.365 2 Median NaN NaN NaN 0 0 Median 0.72949 0.62912 NaN 1 0 Median 0.85433 0.95298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3020600 1848900 1171700 0 0 0 1888200 1231500 656700 1132300 617390 514950 0 0 0 0 0 0 0 0 0 23399 2459 24399 123349;123350 124452 124452 1 LVFDEYLK QFIYILGNRSKQHLRLVFDEYLKTTGKPIE RSKQHLRLVFDEYLKTTGKPIEASIRGELS R L V L K T 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 1 0 0 8 0 1025.5433 P08133 P08133 213 220 ANXA6 Annexin A6 yes yes 2 0.015483 50.127 By MS/MS By matching By MS/MS By matching 3 2 1 1 1.0858 1.0246 22.196 7 Median 1.0858 1.0126 21.006 3 1 Plateau 1.5161 1.2822 10.561 2 0 Median 0.97564 1.0246 NaN 1 0 Median 1.3542 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50715000 24371000 26345000 37366000 18363000 19003000 7727200 3062500 4664600 5436000 2870300 2565700 186260 74579 111680 0 0 0 0 0 0 23400 1898 24400 123351;123352;123353;123354;123355;123356;123357 124453;124454;124455;124456 124455 4 LVFDGLR RETQTECEWTVDTSKLVFDGLRKKVTAMQL EWTVDTSKLVFDGLRKKVTAMQLYECQLID K L V L R K 0 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 818.46504 P15924 P15924 1966 1972 DSP Desmoplakin yes yes 2 0.0050968 103.29 By matching By matching By MS/MS By matching By MS/MS By matching 2 2 1 2 2 1 1.4249 1.2422 56.803 10 Median 0.7525 0.71843 152.21 2 0 Median 1.5591 1.3342 9.2173 2 0 Median 1.2429 1.3774 NaN 1 0 Median 1.5218 1.3272 10.246 2 0 Median 1.0668 1.1189 8.6681 2 1 Median 1.44 1.2037 NaN 1 0 Median 19053000 8611800 10441000 3391600 1054200 2337400 1848000 749530 1098500 3448700 1541600 1907100 841300 349360 491940 9248600 4803000 4445600 275030 114120 160900 23401 2021 24401 123358;123359;123360;123361;123362;123363;123364;123365;123366;123367 124457;124458 124458 2 LVFGFLNGR IPNFPRSTVPGHAGRLVFGFLNGRACVMMQ PGHAGRLVFGFLNGRACVMMQGRFHMYEGY R L V G R A 0 1 1 0 0 0 0 2 0 0 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1021.5709 P00491;G3V5M2;G3V2H3 P00491 68 76 PNP Purine nucleoside phosphorylase yes no 2 0.001612 79.597 By MS/MS By matching By matching 2 1 1 1.0423 0.992 12.328 4 Median 0.98808 0.92533 15.429 2 0 Median 1.3237 1.1057 NaN 1 0 Median 0.98557 0.95356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20856000 10107000 10749000 16508000 8165700 8342000 3770500 1650200 2120200 578160 291060 287100 0 0 0 0 0 0 0 0 0 23402 1821 24402 123368;123369;123370;123371 124459;124460 124460 2 LVFHTQLAHGSPTGR PQMGLPPPPPALRPRLVFHTQLAHGSPTGR LVFHTQLAHGSPTGRIEGFTNVKELYGKIA R L V G R I 1 1 0 0 0 1 0 2 2 0 2 0 0 1 1 1 2 0 0 1 0 0 15 0 1619.8532 O14908 O14908 58 72 GIPC1 PDZ domain-containing protein GIPC1 yes yes 3;4 9.7415E-07 89.624 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 2 0.84914 0.82814 40.009 10 Median 0.93977 0.91127 10.23 2 0 Median 3.0951 2.6908 NaN 1 1 Median 0.7408 0.80906 9.1398 3 0 Plateau 1.0299 0.87537 28.4 2 0 Median 0.76849 0.79996 17.429 2 1 Median NaN NaN NaN 0 0 Median 84414000 41808000 42606000 20459000 9255900 11203000 5175400 1282900 3892500 34547000 18720000 15827000 12963000 5920800 7041900 11269000 6628400 4640700 0 0 0 23403 1502 24403 123372;123373;123374;123375;123376;123377;123378;123379;123380;123381 124461;124462;124463;124464;124465;124466;124467;124468;124469;124470;124471;124472;124473;124474 124465 14 LVFLGEQSVGK MSTGGDFGNPLRKFKLVFLGEQSVGKTSLI RKFKLVFLGEQSVGKTSLITRFMYDSFDNT K L V G K T 0 0 0 0 0 1 1 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 11 0 1175.655 P20340;F5H3K7;F5GX61;Q9NRW1;C9J0I2 P20340 16 26 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.117 0.98554 29.534 6 Median 1.064 0.98554 3.7397 2 0 Median 1.52 1.262 39.185 2 1 Median 0.90557 0.84871 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.609 1.6375 NaN 1 1 Median NaN NaN NaN 0 0 Median 185920000 88304000 97615000 137990000 66166000 71823000 27710000 12512000 15198000 12169000 6759500 5409600 0 0 0 8050000 2865400 5184600 0 0 0 23404 2079;4089 24404 123382;123383;123384;123385;123386;123387 124475;124476;124477;124478;124479;124480;124481;124482;124483;124484 124483 10 LVFLGLDNAGK SSVLQFLGLYKKSGKLVFLGLDNAGKTTLL KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH K L V G K T 1 0 1 1 0 0 0 2 0 0 3 1 0 1 0 0 0 0 0 1 0 0 11 0 1145.6445 Q9NR31;Q5SQT8;X1WI22;D6RAA2;D6RDB2;Q9Y6B6;D6RD69 Q9NR31 28 38 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b no no 2 0.00012337 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 3 3 1.2246 1.0166 56.884 15 Median 1.0789 0.98465 4.7828 3 0 Median 1.2558 1.0669 6.937 4 0 Median 1.7297 1.6219 NaN 1 0 Median 1.2246 1.0139 NaN 1 0 Median 3.7399 4.1293 5.8313 3 0 Plateau 1.148 0.95617 7.0073 3 0 Median 263120000 114020000 149100000 175560000 83099000 92459000 27428000 12210000 15219000 23649000 8537000 15112000 2260400 1010100 1250300 24764000 5071800 19693000 9456900 4089500 5367500 23405 4077;4487 24405 123388;123389;123390;123391;123392;123393;123394;123395;123396;123397;123398;123399;123400;123401;123402 124485;124486;124487;124488;124489;124490;124491;124492;124493;124494;124495;124496;124497;124498;124499;124500 124485 16 LVFPGAQR RDPSSRLKMFAKELKLVFPGAQRMNRGRHE MFAKELKLVFPGAQRMNRGRHEVGALVRAC K L V Q R M 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 886.50249 E7ENR5;H0Y714;Q96G21;B9A008;B8ZZ47 E7ENR5 51 58 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0074539 66.994 By MS/MS By MS/MS 1 1 1.2258 1.1243 1.973 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0869 1.1087 NaN 1 0 Median 1.3825 1.1401 NaN 1 0 Median 11585000 5042100 6542800 0 0 0 0 0 0 0 0 0 0 0 0 8791400 3802600 4988800 2793500 1239400 1554100 23406 865 24406 123403;123404 124501;124502;124503 124502 3 LVFPQDLLEK NVMVTVAKSFEAPIKLVFPQDLLEKGLEAN EAPIKLVFPQDLLEKGLEANNFAMLGLGDV K L V E K G 0 0 0 1 0 1 1 0 0 0 3 1 0 1 1 0 0 0 0 1 0 0 10 0 1200.6754 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72 A0A3B3IUB5 285 294 HM13 Minor histocompatibility antigen H13 yes no 2 0.00041294 76.1 By MS/MS By MS/MS 1 2 1.2003 1.0677 6.7143 3 Median 1.1788 1.1797 NaN 1 0 Median 1.2003 1.0529 1.9815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25095000 11272000 13823000 9283100 4253200 5029900 15812000 7018400 8793300 0 0 0 0 0 0 0 0 0 0 0 0 23407 444 24407 123405;123406;123407 124504;124505;124506;124507;124508;124509;124510;124511;124512;124513;124514;124515;124516;124517;124518 124507 15 LVFSNVNLK ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC YSSNHKLVFSNVNLKEVNYMCPLNSDGYPD K L V L K E 0 0 2 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 9 0 1032.5968 Q16531;F5GY55 Q16531 666 674 DDB1 DNA damage-binding protein 1 yes no 2 0.00069031 104.37 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 1 1.083 1.0533 19.819 9 Median 1.1223 1.1061 2.5377 2 0 Median 1.2723 1.1056 6.8509 2 0 Median 0.81122 0.87546 11.44 4 1 Median 1.5625 1.3678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135780000 67412000 68367000 28605000 13351000 15255000 28524000 12268000 16256000 68105000 37606000 30500000 10545000 4187600 6357500 0 0 0 0 0 0 23408 2985 24408 123408;123409;123410;123411;123412;123413;123414;123415;123416 124519;124520;124521;124522;124523;124524;124525;124526;124527;124528;124529 124520 11 LVFVHSAEGNEFWSALLEK VDVVVDDLLPIKDGKLVFVHSAEGNEFWSA HSAEGNEFWSALLEKAYAKVNGSYEALSGG K L V E K A 2 0 1 0 0 0 3 1 1 0 3 1 0 2 0 2 0 1 0 2 0 0 19 0 2175.1001 P07384;E9PL37;E9PRM1 P07384 175 193 CAPN1 Calpain-1 catalytic subunit yes no 3 7.3378E-08 62.203 By MS/MS By MS/MS 1 1 1.2136 1.1003 15.734 2 Median 1.0463 0.98446 NaN 1 0 Median 1.4076 1.2298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13245000 5669500 7575500 4986800 2305400 2681400 8258300 3364100 4894200 0 0 0 0 0 0 0 0 0 0 0 0 23409 1886 24409 123417;123418 124530;124531;124532;124533 124532 4 LVGDFTHDQSISQK KILCCISCNSNIQIKLVGDFTHDQSISQKL KLVGDFTHDQSISQKLMAGFVECLDCEDAE K L V Q K L 0 0 0 2 0 2 0 1 1 1 1 1 0 1 0 2 1 0 0 1 0 0 14 0 1573.7736 Q92621 Q92621 933 946 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 8.2599E-08 152.85 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1.2751 1.1547 19.251 8 Median NaN NaN NaN 0 0 Median 1.4768 1.2981 21.329 2 0 Median 1.0755 1.181 2.2772 2 0 Median 1.2818 1.1473 16.137 3 0 Median NaN NaN NaN 0 0 Median 0.95932 0.82194 NaN 1 0 Median 162030000 74168000 87858000 0 0 0 6286800 2530300 3756500 126690000 59946000 66739000 25971000 10341000 15631000 0 0 0 3082400 1351200 1731200 23410 3547 24410 123419;123420;123421;123422;123423;123424;123425;123426 124534;124535;124536;124537;124538;124539;124540;124541;124542;124543;124544 124541 11 LVGDVDFEGVR VGINRVHDPVTAKPKLVGDVDFEGVRQKAG AKPKLVGDVDFEGVRQKAGYITPVPGGVGP K L V V R Q 0 1 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1204.6088 P13995;B9A062 P13995 289 299 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 1.6768E-05 123.35 By MS/MS By MS/MS 2 1 1.5814 1.4225 9.8732 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5726 1.5254 NaN 1 1 Median 1.5902 1.3266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52517000 16530000 35987000 0 0 0 0 0 0 43740000 13672000 30068000 8777100 2858200 5918800 0 0 0 0 0 0 23411 2000 24411 123427;123428;123429 124545;124546;124547 124546 3 LVGDVIQR ERTLVAVKPDGVQRRLVGDVIQRFERRGFT PDGVQRRLVGDVIQRFERRGFTLVGMKMLQ R L V Q R F 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 8 0 898.52362 Q4TT34;F2Z2X0;O00746;H0Y6J0;A0A087WVT9 Q4TT34 61 68 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2 0.0039759 84.244 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 0.99441 1.0767 42.935 9 Median 0.87325 0.82344 56.147 3 0 Median 1.8401 1.5568 22.716 2 1 Median 0.99441 1.0767 40.443 3 1 Median 0.84284 0.78618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70974000 34874000 36100000 37015000 16788000 20227000 4029300 1631800 2397500 22346000 12929000 9417600 7583500 3525700 4057800 0 0 0 0 0 0 23412 992 24412 123430;123431;123432;123433;123434;123435;123436;123437;123438;123439 124548;124549;124550;124551 124548 4 LVGEIKEEEKNEK NLYPSSSPYTRNWDKLVGEIKEEEKNEKLE DKLVGEIKEEEKNEKLEGDAALNRLFQQIY K L V E K L 0 0 1 0 0 0 5 1 0 1 1 3 0 0 0 0 0 0 0 1 0 0 13 2 1543.8094 Q9Y2Z0 Q9Y2Z0 290 302 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2;3 0.00014345 73.466 By matching By MS/MS By matching 2 3 2 0.97438 1.0155 14.086 6 Median 1.0292 1.0554 3.3398 2 0 Median 0.90773 0.89897 26.79 2 0 Median 0.92493 0.98754 1.8314 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7495600 3559300 3936300 915440 417650 497800 5199800 2411200 2788600 1380300 730400 649890 0 0 0 0 0 0 0 0 0 23413 4398 24413 123440;123441;123442;123443;123444;123445;123446 124552;124553;124554 124552 3 LVGEIMQETGTR VEKAFHPFIAGPYNRLVGEIMQETGTRINI YNRLVGEIMQETGTRINIPPPSVNRTEIVF R L V T R I 0 1 0 0 0 1 2 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 12 0 1332.6708 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 244 255 HDLBP Vigilin yes no 2 5.348E-06 160.36 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 3 1.2637 1.1135 19.235 9 Median 1.2142 1.1455 21.441 3 1 Median 1.1417 0.94553 11.912 3 2 Median 1.3027 1.432 NaN 1 0 Median 1.3122 1.1542 5.082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166070000 72116000 93958000 100450000 44178000 56267000 35338000 16016000 19322000 21493000 8242900 13250000 8797400 3678600 5118800 0 0 0 0 0 0 23414 4 24414;24415 123447;123448;123449;123450;123451;123452;123453;123454;123455;123456 124555;124556;124557;124558;124559;124560;124561;124562;124563;124564;124565;124566;124567;124568 124557 2 14 LVGGKDFEQPLAISR TQQIDLQGPGPWGFRLVGGKDFEQPLAISR LVGGKDFEQPLAISRVTPGSKAALANLCIG R L V S R V 1 1 0 1 0 1 1 2 0 1 2 1 0 1 1 1 0 0 0 1 0 0 15 1 1628.8886 O00151 O00151 18 32 PDLIM1 PDZ and LIM domain protein 1 yes yes 2;3 3.3473E-09 141.73 By MS/MS 4 0.77085 0.81817 14.178 4 Median 0.77085 0.81817 14.178 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94348000 53164000 41185000 94348000 53164000 41185000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23415 1442 24416 123457;123458;123459;123460 124569;124570;124571;124572 124571 4 LVGGPMDASVEEEGVRR AVSPAAGSSPGKPPRLVGGPMDASVEEEGV GGPMDASVEEEGVRRALDFAVGEYNKASND R L V R R A 1 2 0 1 0 0 3 3 0 0 1 0 1 0 1 1 0 0 0 3 0 0 17 1 1799.8836 P01034 P01034 35 51 CST3 Cystatin-C yes yes 3 0.0051246 25.054 By MS/MS 1 0.96484 1.0478 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96484 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6022300 2902400 3119900 0 0 0 0 0 0 6022300 2902400 3119900 0 0 0 0 0 0 0 0 0 23416 1829 24417 123461 124573;124574 124573 2 LVGIFENQER REVCEEAGVKGTLGRLVGIFENQERKHRTY GTLGRLVGIFENQERKHRTYVYVLIVTEVL R L V E R K 0 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1203.6248 A0A1W2PQS6;S4R435;O95989 A0A1W2PQS6 199 208 RPS10-NUDT3;NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes no 2 0.0012696 85.676 By MS/MS 2 0.8886 0.85787 NaN 1 Median 0.8886 0.85787 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15734000 6608400 9125900 15734000 6608400 9125900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23417 345 24418 123462;123463 124575;124576 124575 2 LVGIISSR FCGIPITDTGRMGSRLVGIISSRDIDFLKE TGRMGSRLVGIISSRDIDFLKEEEHDCFLE R L V S R D 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 P12268;H0Y4R1;E7ETK5 P12268 154 161 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0035928 86.794 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.349 1.2814 18.709 4 Median 1.1896 1.1223 NaN 1 0 Median 1.3059 1.0964 NaN 1 0 Median 1.3935 1.4629 NaN 1 0 Median 1.8501 1.5896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51737000 22677000 29060000 24399000 11052000 13347000 22523000 9730400 12793000 2523800 1082700 1441100 2290300 811260 1479100 0 0 0 0 0 0 23418 1148 24419 123464;123465;123466;123467 124577;124578;124579;124580;124581;124582;124583 124577 7 LVGKETFYVGAAK YVDGKEEIRKEWMFKLVGKETFYVGAAKTK FKLVGKETFYVGAAKTKATINIDAISGFAY K L V A K T 2 0 0 0 0 0 1 2 0 0 1 2 0 1 0 0 1 0 1 2 0 0 13 1 1381.7606 C9JDZ2;Q9NVQ4 C9JDZ2 48 60 FAIM Fas apoptotic inhibitory molecule 1 yes no 3 0.0041288 34.685 By MS/MS By MS/MS 2 1 1.7209 1.5472 29.957 3 Median 1.3075 1.3206 40.344 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7209 1.5472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7419200 2667100 4752100 6801200 2424500 4376700 0 0 0 0 0 0 617960 242580 375380 0 0 0 0 0 0 23419 691 24420 123468;123469;123470 124584;124585 124584 2 LVGLEAPSVR EDEEVARRLWAESARLVGLEAPSVREQPLP AESARLVGLEAPSVREQPLPR_________ R L V V R E 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 1039.6026 Q8NBN7 Q8NBN7 316 325 RDH13 Retinol dehydrogenase 13 yes yes 2 0.0052688 50.607 By matching By MS/MS 1 1 1.0819 0.95857 27.757 2 Median 0.84316 0.78775 NaN 1 0 Median 1.3882 1.1664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11200000 5517500 5682800 8889800 4626900 4262900 2310600 890670 1420000 0 0 0 0 0 0 0 0 0 0 0 0 23420 3409 24421 123471;123472 124586;124587 124586 2 LVGLTGTREEVDQVAR TKEAIANYVKEFSPKLVGLTGTREEVDQVA VGLTGTREEVDQVARAYRVYYSPGPKDEDE K L V A R A 1 2 0 1 0 1 2 2 0 0 2 0 0 0 0 0 2 0 0 3 0 0 16 1 1741.9323 J3QL56;O75880 J3QL56 193 208 SCO1 Protein SCO1 homolog, mitochondrial yes no 2;3 3.9691E-11 133.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 1.107 1.083 26.442 8 Median 1.1505 1.2298 9.794 2 0 Median 1.3749 1.1676 NaN 1 0 Median 0.96056 0.99595 1.6008 2 0 Median 0.84792 0.75924 42.061 2 0 Median 1.1475 1.2445 NaN 1 0 Median NaN NaN NaN 0 0 Median 244460000 111420000 133030000 130440000 58670000 71766000 21441000 8814800 12626000 62781000 31399000 31381000 22273000 9162000 13111000 7526200 3379300 4146900 0 0 0 23421 1339 24422 123473;123474;123475;123476;123477;123478;123479;123480 124588;124589;124590;124591;124592;124593;124594;124595;124596;124597;124598;124599;124600 124592 13 LVGMPAKR RTTPSVVAFTADGERLVGMPAKRQAVTNPN FTADGERLVGMPAKRQAVTNPNNTFYATKR R L V K R Q 1 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 8 1 870.51094 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 100 107 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0088894 72.021 By MS/MS By MS/MS By matching 2 1 1 1.2085 1.1433 27.581 4 Median 1.0005 0.99513 6.0379 2 0 Median 1.3791 1.2586 NaN 1 0 Median 1.6667 1.775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12481000 5532300 6948600 3373700 1781300 1592400 8261500 3379300 4882200 845720 371680 474040 0 0 0 0 0 0 0 0 0 23422 2277 24423 123481;123482;123483;123484 124601;124602;124603;124604 124604 4 LVGMSVLLAK TVSEKGSLTSEEFAKLVGMSVLLAKERLLL EEFAKLVGMSVLLAKERLLLAEKMGHLCRD K L V A K E 1 0 0 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 0 2 0 0 10 0 1029.6256 Q86VN1 Q86VN1 345 354 VPS36 Vacuolar protein-sorting-associated protein 36 yes yes 2 0.031122 33.797 By matching By matching By MS/MS By matching 1 1 1 1 1.068 1.1114 44.246 4 Median 1.1109 1.0882 NaN 1 0 Median 0.56962 0.48928 NaN 1 0 Median 1.0269 1.1352 NaN 1 0 Median 1.5008 1.2977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4979600 2186100 2793500 957930 465360 492560 1619500 732610 886880 2290600 945910 1344700 111540 42214 69326 0 0 0 0 0 0 23423 3287 24424 123485;123486;123487;123488 124605;124606 124606 2 LVGNMHGDETVSR PDAAGPLLPGRPQVKLVGNMHGDETVSRQV VKLVGNMHGDETVSRQVLIYLARELAAGYR K L V S R Q 0 1 1 1 0 0 1 2 1 0 1 0 1 0 0 1 1 0 0 2 0 0 13 0 1413.6671 O75976 O75976 134 146 CPD Carboxypeptidase D yes yes 2;3 0.00031518 58.32 By MS/MS By MS/MS 2 2 1.2268 1.1322 4.8266 4 Median 1.1827 1.1593 5.2281 2 0 Median 1.3175 1.1091 4.792 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14597000 5818600 8778300 6698400 2482700 4215700 7898600 3336000 4562600 0 0 0 0 0 0 0 0 0 0 0 0 23424 1714 24425 123489;123490;123491;123492 124607;124608;124609;124610;124611 124609 5 LVGPEEALSPGEAR ADSWPQLQDHFSAVKLVGPEEALSPGEARD KLVGPEEALSPGEARDMAMDLCRQDPECEF K L V A R D 2 1 0 0 0 0 3 2 0 0 2 0 0 0 2 1 0 0 0 1 0 0 14 0 1423.7307 O60568;H7C2V1 O60568 359 372 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes no 2 6.8436E-09 118.4 By MS/MS 1 0.64565 0.6173 NaN 1 Median 0.64565 0.6173 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5308000 2382000 2926000 5308000 2382000 2926000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23425 1621 24426 123493 124612 124612 1 LVGQGASAVLLDLPNSGGEAQAK ITGGASGLGLATAERLVGQGASAVLLDLPN VLLDLPNSGGEAQAKKLGNNCVFAPADVTS R L V A K K 4 0 1 1 0 2 1 4 0 0 4 1 0 0 1 2 0 0 0 2 0 0 23 0 2194.1594 Q99714;Q5H928 Q99714 30 52 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2;3 3.0797E-34 134.9 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 2 2 1.2754 1.0504 25.938 13 Median 0.87238 0.80447 0.091723 2 0 Median 1.1393 0.95413 31.844 3 0 Median 1.0151 0.95521 7.4218 2 0 Median 1.3306 1.0968 6.119 2 0 Median 1.581 1.6162 5.2556 2 0 Median 1.5604 1.3036 7.7886 2 0 Median 204780000 99334000 105450000 165960000 81875000 84080000 12126000 5404900 6721200 15685000 7573700 8111600 1249900 513110 736810 8963200 3624200 5339000 802180 343000 459180 23426 3764 24427 123494;123495;123496;123497;123498;123499;123500;123501;123502;123503;123504;123505;123506 124613;124614;124615;124616;124617;124618;124619;124620;124621;124622;124623;124624;124625 124613 13 LVGQSIIAYLQK NRKYDEVLHMVRNAKLVGQSIIAYLQKKGY NAKLVGQSIIAYLQKKGYPEVALHFVKDEK K L V Q K K 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1331.7813 P53621;A0A3B3IT15;A0A3B3IU89 P53621 620 631 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 5.2899E-06 99.802 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.2128 1.0976 12.296 9 Median 1.1461 1.1661 4.2439 3 0 Median 1.2185 1.0641 7.9535 3 0 Median 1.3727 1.4834 NaN 1 0 Median 1.2543 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2128 1.0275 NaN 1 0 Median 42417000 18898000 23519000 31280000 13913000 17367000 8007300 3684200 4323000 2565800 1061700 1504100 384650 174890 209760 0 0 0 179800 64187 115610 23427 2473 24428 123507;123508;123509;123510;123511;123512;123513;123514;123515 124626;124627;124628;124629;124630;124631;124632;124633 124626 8 LVGSDQAPGR ______________________________ SALKKLVGSDQAPGRDKNIPAGLQSMNQAL K L V G R D 1 1 0 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 0 1 0 0 10 0 998.51451 Q3YEC7;F2Z2T0 Q3YEC7 8 17 RABL6 Rab-like protein 6 yes no 2 0.0005372 92.439 By MS/MS 1 1.052 0.89895 NaN 1 Median NaN NaN NaN 0 0 Median 1.052 0.89895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2985300 1399900 1585400 0 0 0 2985300 1399900 1585400 0 0 0 0 0 0 0 0 0 0 0 0 23428 3014 24429 123516 124634 124634 1 LVGSVNLFSDENVPR LFLLAQQKVPSKLKKLVGSVNLFSDENVPR LVGSVNLFSDENVPRLVNVLKMAASSVKKD K L V P R L 0 1 2 1 0 0 1 1 0 0 2 0 0 1 1 2 0 0 0 3 0 0 15 0 1644.8471 Q9BQG0;I3L1L3 Q9BQG0 232 246 MYBBP1A Myb-binding protein 1A yes no 2 2.3178E-07 93.821 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.81003 0.85835 18.836 5 Median NaN NaN NaN 0 0 Median 0.97412 0.85835 NaN 1 0 Median 0.91109 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79854 0.85109 3.4128 2 1 Median 0.72761 0.60154 NaN 1 0 Median 39335000 20019000 19315000 0 0 0 982550 489350 493200 30023000 15222000 14801000 0 0 0 5737500 2891700 2845800 2591600 1416100 1175500 23429 3789 24430 123517;123518;123519;123520;123521 124635;124636;124637;124638 124635 4 LVGTEWR IKAQHPDYSFGELSRLVGTEWRNLETAKKA YSFGELSRLVGTEWRNLETAKKAEYEERAA R L V W R N 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 7 0 859.4552 Q86U86;E7EVG2 Q86U86 1412 1418 PBRM1 Protein polybromo-1 yes no 2 0.0026817 118.01 By MS/MS By MS/MS By matching 1 1 1 0.90258 0.98371 15.282 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90258 0.98371 NaN 1 0 Median 1.2172 1.0683 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87252 0.79447 NaN 1 0 Median 15998000 8554700 7443400 0 0 0 0 0 0 13845000 7555200 6289500 1885600 875550 1010100 0 0 0 267700 123920 143770 23430 3273 24431 123522;123523;123524 124639;124640 124639 2 LVGTPGAELLK FPGTDHIDQLKLILRLVGTPGAELLKKISS LILRLVGTPGAELLKKISSESARNYIQSLT R L V L K K 1 0 0 0 0 0 1 2 0 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1096.6492 Q16539;B4E0K5 Q16539 238 248 MAPK14 Mitogen-activated protein kinase 14 yes no 2 0.044398 26.889 By MS/MS 1 0.77912 0.72596 NaN 1 Median 0.77912 0.72596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8730400 4897100 3833300 8730400 4897100 3833300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23431 2987 24432 123525 124641 124641 1 LVGVFHTEYGALNR FKRAVHAHVNLGYTKLVGVFHTEYGALNRV KLVGVFHTEYGALNRVHVLWWNESADSRAA K L V N R V 1 1 1 0 0 0 1 2 1 0 2 0 0 1 0 0 1 0 1 2 0 0 14 0 1574.8205 Q9UFN0 Q9UFN0 180 193 NIPSNAP3A Protein NipSnap homolog 3A yes yes 2;3 6.4405E-08 129.85 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.3958 1.3292 33.281 5 Median 1.3958 1.3292 NaN 1 0 Median 2.486 2.1056 NaN 1 0 Median 0.98364 0.94512 7.8716 2 0 Median 1.6464 1.3606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136290000 65388000 70902000 110770000 52492000 58278000 2969700 1097100 1872700 21369000 11387000 9981100 1181600 411420 770160 0 0 0 0 0 0 23432 4259 24433 123526;123527;123528;123529;123530;123531;123532 124642;124643;124644;124645;124646;124647;124648 124646 7 LVGVLVHSGQASGGHYYSYIIQR SEQSESETAGSTKYRLVGVLVHSGQASGGH GQASGGHYYSYIIQRNGGDGERNRWYKFDD R L V Q R N 1 1 0 0 0 2 0 4 2 2 2 0 0 0 0 3 0 0 3 3 0 0 23 0 2503.2972 Q93008;O00507 Q93008 1865 1887 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3;4 5.7296E-35 139.02 By MS/MS By matching 3 2 1.1874 1.0372 9.4965 5 Median 1.0312 0.96793 11.668 3 0 Median 1.2938 1.092 7.2794 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55518000 25565000 29953000 48690000 23159000 25531000 6828000 2406400 4421600 0 0 0 0 0 0 0 0 0 0 0 0 23433 3573 24434 123533;123534;123535;123536;123537 124649;124650;124651;124652 124649 4 LVGVVPGPVGEPADSDKR NVYFDLKSRGDKYGKLVGVVPGPVGEPADS VVPGPVGEPADSDKRHASDFALWKAAKPQE K L V K R H 1 1 0 2 0 0 1 3 0 0 1 1 0 0 3 1 0 0 0 4 0 0 18 1 1790.9527 Q9HA77 Q9HA77 207 224 CARS2 Probable cysteine--tRNA ligase, mitochondrial yes yes 3 0.00032669 36.112 By MS/MS 1 0.36852 0.41097 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36852 0.41097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2870600 1850600 1020000 0 0 0 0 0 0 2870600 1850600 1020000 0 0 0 0 0 0 0 0 0 23434 4006 24435 123538 124653 124653 1 LVGYLDR VTQPKDGGFCEVCKKLVGYLDRNLEKNSTK GFCEVCKKLVGYLDRNLEKNSTKQEILAAL K L V D R N 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 1 1 0 0 7 0 834.45995 Q5BJH1;C9JIZ6;P07602 Q5BJH1 131 137 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 2 0.016334 68.915 By MS/MS 2 1.5763 1.3096 20.61 2 Median NaN NaN NaN 0 0 Median 1.5763 1.3096 20.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44944000 16586000 28358000 0 0 0 44944000 16586000 28358000 0 0 0 0 0 0 0 0 0 0 0 0 23435 701 24436 123539;123540 124654;124655 124654 2 LVHANFGTK GGYVAYSKAATVTGKLVHANFGTKKDFEDL ATVTGKLVHANFGTKKDFEDLYTPVNGSIV K L V T K K 1 0 1 0 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 985.53451 P02786;G3V0E5 P02786 232 240 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.0012763 83.313 By matching By MS/MS 1 1 1.2879 1.2094 18.615 2 Median 1.3674 1.3796 NaN 1 0 Median 1.2131 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11953000 5529800 6423700 1197600 497620 699970 10756000 5032100 5723800 0 0 0 0 0 0 0 0 0 0 0 0 23436 1836 24437 123541;123542 124656;124657 124657 2 LVHGDIFRPPR QMDSTEDAQEEFGWKLVHGDIFRPPRKGML FGWKLVHGDIFRPPRKGMLLSVFLGSGTQI K L V P R K 0 2 0 1 0 0 0 1 1 1 1 0 0 1 2 0 0 0 0 1 0 0 11 1 1305.7306 Q99805 Q99805 350 360 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 2;3 6.3397E-05 96.113 By MS/MS By MS/MS By matching 2 2 1 0.74885 0.70186 76.946 5 Median 0.70765 0.76287 40.847 2 0 Median 0.69237 0.64892 11.091 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.7179 3.6427 NaN 1 0 Median 81306000 50793000 30513000 13828000 7268900 6559200 65178000 43153000 22025000 0 0 0 0 0 0 0 0 0 2299400 371170 1928200 23437 3770 24438 123543;123544;123545;123546;123547 124658;124659;124660;124661;124662;124663;124664 124661 7 LVHGDIFRPPRK QMDSTEDAQEEFGWKLVHGDIFRPPRKGML GWKLVHGDIFRPPRKGMLLSVFLGSGTQIL K L V R K G 0 2 0 1 0 0 0 1 1 1 1 1 0 1 2 0 0 0 0 1 0 0 12 2 1433.8256 Q99805 Q99805 350 361 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 3 0.0019202 39.917 By MS/MS 2 0.7608 0.79576 1.9492 2 Median NaN NaN NaN 0 0 Median 0.7608 0.79576 1.9492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5043600 2590700 2452900 0 0 0 5043600 2590700 2452900 0 0 0 0 0 0 0 0 0 0 0 0 23438 3770 24439 123548;123549 124665;124666 124665 2 LVHHILQDMYK NNVVFIRTLGIEPEKLVHHILQDMYKTKKK EPEKLVHHILQDMYKTKKKKTRVILRMLPI K L V Y K T 0 0 0 1 0 1 0 0 2 1 2 1 1 0 0 0 0 0 1 1 0 0 11 0 1395.7333 Q9NXG2 Q9NXG2 140 150 THUMPD1 THUMP domain-containing protein 1 yes yes 3 0.00059774 54.784 By MS/MS By MS/MS 1 1 0.31143 0.27627 171.39 2 Median 0.089337 0.082225 NaN 1 1 Median 1.0856 0.92822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38016000 33813000 4202500 35154000 32427000 2726400 2862100 1386000 1476100 0 0 0 0 0 0 0 0 0 0 0 0 23439 4165 24440 123550;123551 124667;124668;124669 124668 3 LVHIIGALR SPDSIHSVAPENEGRLVHIIGALRTSKLLS PENEGRLVHIIGALRTSKLLSDPNYGVHLP R L V L R T 1 1 0 0 0 0 0 1 1 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 990.63383 Q9BTV4 Q9BTV4 88 96 TMEM43 Transmembrane protein 43 yes yes 2 0.010839 47.849 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.0135 0.98506 35.572 6 Median 0.997 0.99011 NaN 1 0 Median 0.7334 0.62865 50.133 2 0 Median 1.0303 1.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9092 0.98003 NaN 1 0 Median 1.317 1.1523 NaN 1 0 Median 18538000 9591800 8946000 7443900 3658900 3785000 5693100 3107900 2585300 2760300 1417600 1342700 0 0 0 2136400 1209600 926780 504050 197830 306220 23440 3830 24441 123552;123553;123554;123555;123556;123557 124670 124670 1 LVHPDFFSQR VDTAKLQHRYQQLQRLVHPDFFSQRSQTEK QQLQRLVHPDFFSQRSQTEKDFSEKHSTLV R L V Q R S 0 1 0 1 0 1 0 0 1 0 1 0 0 2 1 1 0 0 0 1 0 0 10 0 1244.6302 B0QYH2;Q8IWL3 B0QYH2 100 109 HSCB Iron-sulfur cluster co-chaperone protein HscB, mitochondrial yes no 3 0.00041118 64.82 By MS/MS By matching 1 1 1.0179 0.91479 7.9174 2 Median 0.91531 0.86498 NaN 1 0 Median 1.1321 0.96746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6868600 3387200 3481400 6217800 3043100 3174700 650760 344140 306620 0 0 0 0 0 0 0 0 0 0 0 0 23441 556 24442 123558;123559 124671;124672 124671 2 LVHPGVAEVVFVK IVELFCVCGALKRARLVHPGVAEVVFVKKD ARLVHPGVAEVVFVKKDDAITAYKKYNNRC R L V V K K 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 0 0 0 0 5 0 0 13 0 1392.8129 F6VRR5;Q9BY77 F6VRR5 328 340 POLDIP3 Polymerase delta-interacting protein 3 yes no 2;3 8.1102E-07 97.911 By matching By MS/MS By MS/MS By MS/MS By matching 1 7 7 2 1 1.0467 0.95304 13.164 18 Median 0.84037 0.82652 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92368 0.8813 16.215 7 0 Median 1.1108 0.96114 9.4665 7 0 Median 0.92107 0.87696 13.485 2 0 Median 1.3177 1.1168 NaN 1 0 Median 140250000 70951000 69303000 1018800 705310 313520 0 0 0 103220000 53124000 50092000 24460000 11383000 13076000 10569000 5311100 5258000 989490 426320 563170 23442 1051 24443 123560;123561;123562;123563;123564;123565;123566;123567;123568;123569;123570;123571;123572;123573;123574;123575;123576;123577 124673;124674;124675;124676;124677;124678;124679;124680;124681;124682;124683;124684 124682 12 LVHQNSASDDAEASMISK KDVFQKFYAKMLAKRLVHQNSASDDAEASM QNSASDDAEASMISKLKQACGFEYTSKLQR R L V S K L 3 0 1 2 0 1 1 0 1 1 1 1 1 0 0 4 0 0 0 1 0 0 18 0 1901.8789 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 450 467 CUL1 Cullin-1 yes no 2;3 1.4448E-06 68.82 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.95409 0.85958 12.517 6 Median 0.92518 0.85951 NaN 1 0 Median 0.85148 0.74396 NaN 1 1 Median 0.89701 0.95142 15.74 2 0 Median 1.0619 0.91988 9.5761 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60583000 30549000 30035000 6118700 3182500 2936200 6349500 3160800 3188700 32442000 16538000 15903000 15674000 7666900 8006700 0 0 0 0 0 0 23443 256 24444 123578;123579;123580;123581;123582;123583 124685;124686;124687;124688;124689;124690;124691;124692;124693 124687 9 LVHSLFESIMSTQESSNPNNVLK RHWFFKGQLHVDGQKLVHSLFESIMSTQES IMSTQESSNPNNVLKFCDNSSAIQGKEVRF K L V L K F 0 0 3 0 0 1 2 0 1 1 3 1 1 1 1 5 1 0 0 2 0 0 23 0 2573.2796 O15067 O15067 246 268 PFAS Phosphoribosylformylglycinamidine synthase yes yes 3 7.1502E-18 76.704 By MS/MS 2 0.83852 0.81024 11.337 2 Median 0.83852 0.81024 11.337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11723000 6120700 5602500 11723000 6120700 5602500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23444 1518 24445 123584;123585 124694;124695 124695 2 LVHSYPYDWR IKMLQTAKNLLKEEKLVHSYPYDWRTKKPV LKEEKLVHSYPYDWRTKKPVVIRASKQWFI K L V W R T 0 1 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 1 2 1 0 0 10 0 1334.6408 Q9NSE4 Q9NSE4 459 468 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2;3 0.0002126 71.349 By MS/MS By MS/MS 2 1 0.98851 0.95325 14.417 3 Median 0.94142 0.90789 6.8957 2 1 Median 1.3367 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19291000 9765100 9526100 17465000 9033000 8431600 1826600 732040 1094600 0 0 0 0 0 0 0 0 0 0 0 0 23445 4103 24446 123586;123587;123588 124696;124697;124698;124699;124700 124697 5 LVIDEPAK DKKGNAEGSSDEEGKLVIDEPAKEKNEKGA SSDEEGKLVIDEPAKEKNEKGALKRRAGDL K L V A K E 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 883.50148 P51858 P51858 139 146 HDGF Hepatoma-derived growth factor yes yes 2 0.036117 57.281 By MS/MS By MS/MS 1 1 1.2949 1.1712 15.645 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0915 1.0485 NaN 1 1 Median 1.5364 1.3082 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7835800 3321500 4514300 0 0 0 0 0 0 6824100 2924700 3899400 1011700 396820 614920 0 0 0 0 0 0 23446 2444 24447 123589;123590 124701;124702 124701 2 LVIDQIDNGFFSPK GYEAKEYYEALPELKLVIDQIDNGFFSPKQ KLVIDQIDNGFFSPKQPDLFKDIINMLFYH K L V P K Q 0 0 1 2 0 1 0 1 0 2 1 1 0 2 1 1 0 0 0 1 0 0 14 0 1591.8246 P06737;E9PK47 P06737 741 754 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 4.4548E-08 110.86 By MS/MS By MS/MS By MS/MS 2 1 1 1.0484 0.96544 16.099 4 Median 0.91368 0.904 10.489 2 1 Median 1.0934 0.95735 NaN 1 0 Median 1.1799 1.2356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46937000 23200000 23737000 11042000 5416100 5625500 34364000 17094000 17271000 1530900 690230 840690 0 0 0 0 0 0 0 0 0 23447 1874 24448 123591;123592;123593;123594 124703;124704;124705;124706;124707 124707 5 LVIDVIR VKPTDEKLRELKGAKLVIDVIRYEPPHIKK LRELKGAKLVIDVIRYEPPHIKKALQYACG K L V I R Y 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 Q14683;G8JLG1 Q14683 593 599 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.1734 1.1172 4.4772 6 Median 1.2024 1.1388 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99698 1.096 NaN 1 0 Median 1.3376 1.174 NaN 1 0 Median 1.0932 1.1214 7.953 2 0 Median 1.3104 1.0892 NaN 1 0 Median 70988000 34950000 36038000 5916800 2593300 3323600 0 0 0 20377000 10148000 10230000 1498100 600470 897670 40295000 20369000 19927000 2900200 1239800 1660400 23448 2889 24449 123595;123596;123597;123598;123599;123600 124708;124709;124710;124711;124712;124713;124714;124715;124716;124717;124718 124713 11 LVIEEAER SPGKTVTIVVRGSNKLVIEEAERSIHDALC VVRGSNKLVIEEAERSIHDALCVIRCLVKK K L V E R S 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.51311 P50991 P50991 396 403 CCT4 T-complex protein 1 subunit delta yes yes 2 0.00038772 154.35 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 5 4 1 2 1 2 1.0926 1.054 115.43 14 Median 1.0625 1.0565 110.39 5 1 Median 1.2205 1.0514 209.95 3 1 Median 1.2077 1.2007 NaN 1 0 Median 1.1654 1.0055 22.924 2 0 Median 2.0097 2.004 NaN 1 0 Median 0.96733 0.80699 3.8088 2 0 Median 227400000 121620000 105780000 88315000 43343000 44972000 67420000 46061000 21358000 19874000 8504000 11370000 20700000 9553900 11146000 11706000 3875200 7830500 19386000 10285000 9100300 23449 2424 24450 123601;123602;123603;123604;123605;123606;123607;123608;123609;123610;123611;123612;123613;123614;123615 124719;124720;124721;124722;124723;124724;124725;124726;124727;124728;124729 124719 11 LVIFDTMLEIK MQEHTCYDAMATSSKLVIFDTMLEIKKAFF TSSKLVIFDTMLEIKKAFFALVANGVRAAP K L V I K K 0 0 0 1 0 0 1 0 0 2 2 1 1 1 0 0 1 0 0 1 0 0 11 0 1320.7363 B4DUK8;Q9UGI9 B4DUK8 203 213 PRKAG3 5-AMP-activated protein kinase subunit gamma-3 yes no 2 0.012516 42.109 By MS/MS 1 1.2338 1.1069 NaN 1 Median 1.2338 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107130000 47024000 60104000 107130000 47024000 60104000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23450 605 24451 123616 124730 124730 232 1 LVIFNELSSAR ELLSAHKDNLGTTIKLVIFNELSSARNPNN TTIKLVIFNELSSARNPNNMQVLYTALQHS K L V A R N 1 1 1 0 0 0 1 0 0 1 2 0 0 1 0 2 0 0 0 1 0 0 11 0 1247.6874 Q8N201 Q8N201 444 454 INTS1 Integrator complex subunit 1 yes yes 2 0.0018837 56.563 By MS/MS 1 0.7783 0.8566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7783 0.8566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5548600 2776300 2772300 0 0 0 0 0 0 5548600 2776300 2772300 0 0 0 0 0 0 0 0 0 23451 3360 24452 123617 124731 124731 1 LVIFTNQMSIGR EIPRKLRELEAEGYKLVIFTNQMSIGRGKL GYKLVIFTNQMSIGRGKLPAEEFKAKVEAV K L V G R G 0 1 1 0 0 1 0 1 0 2 1 0 1 1 0 1 1 0 0 1 0 0 12 0 1377.7439 M0QYH2;Q96T60;M0R3C8;M0QYI1;A0A0D9SFD6 M0QYH2 213 224 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 1.6177E-09 174.41 By MS/MS 3 0.48879 0.48775 42.272 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48879 0.48775 42.272 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31358000 19608000 11750000 0 0 0 0 0 0 31358000 19608000 11750000 0 0 0 0 0 0 0 0 0 23452 1418 24453;24454 123618;123619;123620 124732;124733;124734 124734 455 3 LVIITAGAR KIVSGKDYNVTANSKLVIITAGARQQEGES VTANSKLVIITAGARQQEGESRLNLVQRNV K L V A R Q 2 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 0 1 0 0 9 0 912.57565 P00338;F5GYU2;F5GXY2;F5GXH2 P00338 91 99 LDHA L-lactate dehydrogenase A chain yes no 2 1.9641E-10 170.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 12 1 4 4 3 1.2457 1.1326 17.601 34 Plateau 1.2165 1.1849 12.92 10 0 Median 1.0833 0.9153 9.7338 12 0 Median 1.3018 1.2587 NaN 1 0 Median 0.99186 0.84357 11.014 4 0 Median 1.1184 1.1393 12.267 4 0 Median 1.2139 0.98782 8.9131 3 0 Plateau 3067700000 1361200000 1706500000 1433400000 600590000 832770000 1471900000 690960000 780960000 114670000 48240000 66428000 25362000 11462000 13901000 14250000 6320700 7928900 8179900 3645800 4534000 23453 1813 24455 123621;123622;123623;123624;123625;123626;123627;123628;123629;123630;123631;123632;123633;123634;123635;123636;123637;123638;123639;123640;123641;123642;123643;123644;123645;123646;123647;123648;123649;123650;123651;123652;123653;123654 124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745;124746;124747;124748;124749;124750;124751;124752;124753;124754;124755;124756;124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767;124768;124769;124770;124771;124772 124742 38 LVILANNCPALR GYKQTLKMIRQGKAKLVILANNCPALRKSE KAKLVILANNCPALRKSEIEYYAMLAKTGV K L V L R K 2 1 2 0 1 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1352.7598 E5RI99;P62888;E5RJH3 E5RI99 45 56 RPL30 60S ribosomal protein L30 yes no 2 1.54E-14 182.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.0094 0.90185 6.3942 6 Median 0.9606 0.93054 2.8327 2 0 Median 1.045 0.88202 1.5478 2 0 Median 0.98067 0.98972 NaN 1 0 Median 1.0458 0.8252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 319190000 154120000 165080000 27412000 14242000 13170000 240340000 114580000 125760000 50445000 24884000 25561000 996620 414380 582240 0 0 0 0 0 0 23454 849 24456 123655;123656;123657;123658;123659;123660;123661;123662 124773;124774;124775;124776;124777;124778;124779;124780;124781;124782;124783;124784;124785;124786;124787 124783 15 LVILANNCPALRK GYKQTLKMIRQGKAKLVILANNCPALRKSE AKLVILANNCPALRKSEIEYYAMLAKTGVH K L V R K S 2 1 2 0 1 0 0 0 0 1 3 1 0 0 1 0 0 0 0 1 0 0 13 1 1480.8548 E5RI99;P62888 E5RI99 45 57 RPL30 60S ribosomal protein L30 yes no 2;3 1.6429E-07 133.86 By matching By MS/MS By matching 2 2 1 1.2465 1.2986 47.13 5 Median 0.68625 0.67653 22.355 2 0 Median 1.7895 1.5799 27.733 2 0 Median 1.2465 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41650000 15740000 25911000 4151600 1968900 2182700 35028000 12768000 22261000 2470300 1003200 1467100 0 0 0 0 0 0 0 0 0 23455 849 24457 123663;123664;123665;123666;123667 124788;124789 124788 2 LVILDEADAMTQDAQNALR LSFASTRTIFKKGFKLVILDEADAMTQDAQ DEADAMTQDAQNALRRVIEKFTENTRFCLI K L V L R R 4 1 1 3 0 2 1 0 0 1 3 0 1 0 0 0 1 0 0 1 0 0 19 0 2086.0365 P40937;F5H5S0;E9PEP3 P40937 121 139 RFC5 Replication factor C subunit 5 yes no 2 1.1187E-07 72.958 By MS/MS 1 0.93862 0.91455 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93862 0.91455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2058400 1029600 1028800 0 0 0 0 0 0 2058400 1029600 1028800 0 0 0 0 0 0 0 0 0 23456 2293 24458 123668 124790;124791 124791 2 LVINGNPITIFQER THGKFHGTVKAENGKLVINGNPITIFQERD KLVINGNPITIFQERDPSKIKWGDAGAEYV K L V E R D 0 1 2 0 0 1 1 1 0 3 1 0 0 1 1 0 1 0 0 1 0 0 14 0 1612.8937 P04406 P04406 67 80 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2;3 1.2779E-56 199.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 1 1 1.1901 1.1791 19.532 16 Linear 0.83019 0.80845 16.528 6 0 Median 1.0952 0.78042 29.8 4 2 Linear 1.0798 0.97627 12.766 4 0 Linear 0.76462 0.64205 NaN 1 0 Median 0.83341 0.89647 NaN 1 0 Median NaN NaN NaN 0 0 Median 822530000 417320000 405210000 454660000 225940000 228720000 327860000 170860000 157000000 37204000 18998000 18205000 476600 277940 198660 2338500 1247500 1091000 0 0 0 23457 1850 24459 123669;123670;123671;123672;123673;123674;123675;123676;123677;123678;123679;123680;123681;123682;123683;123684 124792;124793;124794;124795;124796;124797;124798;124799;124800;124801;124802;124803;124804;124805;124806;124807;124808;124809;124810;124811;124812;124813;124814;124815;124816;124817 124813 26 LVINGNPITIFQERDPSK THGKFHGTVKAENGKLVINGNPITIFQERD NGNPITIFQERDPSKIKWGDAGAEYVVEST K L V S K I 0 1 2 1 0 1 1 1 0 3 1 1 0 1 2 1 1 0 0 1 0 0 18 1 2040.1004 P04406 P04406 67 84 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2;3 3.1415E-08 90.453 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 3 1 1 1 0.81926 0.77249 35.093 13 Median 0.79784 0.82591 45.402 7 0 Median 0.81732 0.7538 13.333 3 1 Median 0.91128 0.99089 NaN 1 0 Median 0.82447 0.71538 NaN 1 0 Median 0.84992 0.92045 NaN 1 0 Median NaN NaN NaN 0 0 Median 257180000 136590000 120590000 184340000 98496000 85848000 54754000 28725000 26029000 6177100 3287200 2889900 7916800 4216800 3700000 3982700 1862200 2120500 0 0 0 23458 1850 24460 123685;123686;123687;123688;123689;123690;123691;123692;123693;123694;123695;123696;123697 124818;124819;124820;124821;124822;124823;124824;124825;124826;124827;124828;124829;124830;124831;124832;124833;124834;124835;124836;124837;124838 124821 21 LVINSGNGAVEDR CIAVNSRRRCGQKKKLVINSGNGAVEDRKP KKLVINSGNGAVEDRKPSGLNGEASKSQEM K L V D R K 1 1 2 1 0 0 1 2 0 1 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1342.6841 H0YD13;H0Y2P0;P16070;H0YE40;J3KN83 H0YD13 146 158 CD44 CD44 antigen yes no 2 0.001603 79.974 By MS/MS By MS/MS By matching 1 2 1 0.84 0.77715 33.002 4 Median 0.96842 0.94364 NaN 1 0 Median 0.70938 0.60622 7.6794 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0837 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median 7906900 4299200 3607700 3063400 1432700 1630700 2793300 1574700 1218600 0 0 0 0 0 0 2050100 1291800 758340 0 0 0 23459 1139 24461 123698;123699;123700;123701 124839;124840;124841 124840 2 LVINTEEVFRPYAK GNPIVPLNIRLFLAKLVINTEEVFRPYAKH KLVINTEEVFRPYAKHWLSPLLQLAASENN K L V A K H 1 1 1 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 1 2 0 0 14 1 1677.909 P78527 P78527 2149 2162 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 3.2388E-11 180.36 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 1 4 2 3 1 0.82347 0.91385 17.187 14 Median 0.8229 0.82585 4.9869 3 0 Median 1.1941 1.1031 NaN 1 0 Median 0.76654 0.90103 6.6625 4 0 Median 1.3038 1.2363 2.8374 2 0 Median 0.77284 0.85295 9.4008 3 0 Median 1.5113 1.3768 NaN 1 0 Median 402210000 227230000 174970000 194340000 112670000 81665000 16617000 7350300 9266500 174190000 97785000 76407000 1559800 682640 877150 15322000 8674300 6647700 183130 71828 111300 23460 2647 24462 123702;123703;123704;123705;123706;123707;123708;123709;123710;123711;123712;123713;123714;123715 124842;124843;124844;124845;124846;124847;124848;124849;124850;124851;124852;124853;124854;124855;124856;124857;124858 124844 17 LVIPLVVHSAQK QAPIQMGEEAVRWAKLVIPLVVHSAQKVHL WAKLVIPLVVHSAQKVHLRGATALEMGMPL K L V Q K V 1 0 0 0 0 1 0 0 1 1 2 1 0 0 1 1 0 0 0 3 0 0 12 0 1302.8024 Q5UIP0;H7BZN3 Q5UIP0 187 198 RIF1 Telomere-associated protein RIF1 yes no 3 4.181E-05 87.667 By MS/MS By matching By matching By matching 3 2 1 1 0.96459 0.93802 12.879 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80355 0.96808 10.495 3 0 Plateau 0.98009 0.89113 25.545 2 0 Median 0.96459 1.0203 NaN 1 0 Median 1.0798 0.93802 NaN 1 0 Median 24717000 13939000 10779000 0 0 0 0 0 0 21619000 12408000 9211300 664510 301990 362520 2286600 1163500 1123100 147150 65506 81646 23461 3109 24463 123716;123717;123718;123719;123720;123721;123722 124859;124860;124861;124862 124859 4 LVIPSELGYGER WDQGLLGMCEGEKRKLVIPSELGYGERGAP KRKLVIPSELGYGERGAPPKIPGGATLVFE K L V E R G 0 1 0 0 0 0 2 2 0 1 2 0 0 0 1 1 0 0 1 1 0 0 12 0 1331.7085 A0A494C1N0;P26885 A0A494C1N0 133 144 FKBP2 Peptidyl-prolyl cis-trans isomerase FKBP2 yes no 2 1.4973E-07 147.2 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1.2478 1.0219 48.489 7 Median NaN NaN NaN 0 0 Median 1.3084 1.1131 NaN 1 1 Median 1.585 1.7663 52.847 3 0 Median 1.1305 0.95621 4.0098 2 0 Median NaN NaN NaN 0 0 Median 0.88198 0.68021 NaN 1 0 Median 78225000 35345000 42880000 0 0 0 13566000 4896900 8668800 62074000 29240000 32834000 2074300 944340 1129900 0 0 0 510770 263430 247340 23462 472 24464 123723;123724;123725;123726;123727;123728;123729 124863;124864;124865;124866;124867 124865 5 LVISHEEELIPLHK KGPTFRISGVQVNAKLVISHEEELIPLHKS KLVISHEEELIPLHKSIPSDPEERKQYTIP K L V H K S 0 0 0 0 0 0 3 0 2 2 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1655.9247 O14646 O14646 1213 1226 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0093991 25.718 By matching By MS/MS By matching 1 2 1 0.87372 0.81085 30.904 4 Median 0.52075 0.50127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90849 0.94675 13.008 2 0 Median 0.91127 0.76136 NaN 1 0 Median 9535000 5416600 4118400 3936100 2689000 1247100 0 0 0 0 0 0 0 0 0 5107100 2465500 2641700 491770 262190 229580 23463 1486 24465 123730;123731;123732;123733 124868 124868 1 LVIVGDGACGK ______________________________ IRKKLVIVGDGACGKTCLLIVFSKDQFPEV K L V G K T 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1087.5696 P61586;Q5JR08;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q5JR06;E9PN11;U3KQA9;U3KQV3;E9PLA2;C9JRM1 P61586 8 18 RHOA;RHOC Transforming protein RhoA;Rho-related GTP-binding protein RhoC yes no 2 0.00013837 87.308 By matching By MS/MS 1 2 0.66879 1.0981 35.789 3 Plateau 0.65985 0.62417 NaN 1 0 Median 0.92647 0.78981 46.824 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12422000 5955400 6466600 2549600 1517800 1031800 9872300 4437500 5434800 0 0 0 0 0 0 0 0 0 0 0 0 23464 2559 24466 123734;123735;123736 124869 124869 1 LVIVNLQPTK PSGNLPLATKRRGGRLVIVNLQPTKHDRHA RRGGRLVIVNLQPTKHDRHADLRIHGYVDE R L V T K H 0 0 1 0 0 1 0 0 0 1 2 1 0 0 1 0 1 0 0 2 0 0 10 0 1123.6965 Q8N6T7;M0QZ09;M0R1F6 Q8N6T7 236 245 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes no 2 0.0028032 58.981 By MS/MS By matching 1 1 0.85707 0.80872 2.0508 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78274 0.82053 NaN 1 0 Median 0.93847 0.79708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6794800 3596500 3198300 0 0 0 0 0 0 6535700 3474700 3061000 259040 121780 137260 0 0 0 0 0 0 23465 3390 24467 123737;123738 124870 124870 1 LVKDQEALMK FANLFGVLALFQSGRLVKDQEALMKSVKLL FQSGRLVKDQEALMKSVKLLQALAQYQNHL R L V M K S 1 0 0 1 0 1 1 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 10 1 1173.6427 Q9BQG0;I3L1L3 Q9BQG0 149 158 MYBBP1A Myb-binding protein 1A yes no 2 0.0018293 79.474 By MS/MS By MS/MS 1 1 0.98275 1.0894 5.1607 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9874 1.1299 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97812 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median 8616800 4260000 4356800 0 0 0 0 0 0 2603900 1275100 1328800 0 0 0 6012900 2984900 3028000 0 0 0 23466 3789 24468 123739;123740 124871;124872;124873 124871 3 LVKDVFISAAER QNVEHVPLSLDRAMRLVKDVFISAAERDVY AMRLVKDVFISAAERDVYTGDALRICIVTK R L V E R D 2 1 0 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 2 0 0 12 1 1346.7558 P20618 P20618 202 213 PSMB1 Proteasome subunit beta type-1 yes yes 2;3 0.0028142 72.006 By MS/MS By MS/MS 1 2 1.1368 1.1223 5.0933 3 Median 1.0758 1.1223 NaN 1 0 Median 1.1966 1.1127 7.1683 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25863000 12286000 13576000 17941000 8688700 9252600 7921400 3597700 4323700 0 0 0 0 0 0 0 0 0 0 0 0 23467 2081 24469 123741;123742;123743 124874;124875;124876;124877;124878 124875 5 LVKEEVFWR EDELLSKMRFALVPKLVKEEVFWRNYFYRV FALVPKLVKEEVFWRNYFYRVSLIKQSAQL K L V W R N 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 1 0 2 0 0 9 1 1204.6604 Q96A49 Q96A49 192 200 SYAP1 Synapse-associated protein 1 yes yes 3 0.0043981 45.137 By MS/MS By matching 1 1 1.5932 1.5221 7.5939 2 Median 1.4362 1.4425 NaN 1 0 Median 1.7675 1.606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3016900 1114700 1902200 2727700 1041100 1686600 289140 73559 215580 0 0 0 0 0 0 0 0 0 0 0 0 23468 3594 24470 123744;123745 124879 124879 1 LVKPGNQNTQVTEAWNK DVIKAAHLCAEAALRLVKPGNQNTQVTEAW KPGNQNTQVTEAWNKVAHSFNCTPIEGMLS R L V N K V 1 0 3 0 0 2 1 1 0 0 1 2 0 0 1 0 2 1 0 2 0 0 17 1 1925.9959 Q9UQ80;F8VR77;H0YIN7;F8W0A3 Q9UQ80 156 172 PA2G4 Proliferation-associated protein 2G4 yes no 2;3 1.1318E-24 192.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 6 9 1 2 0.92375 0.87612 13.445 29 Median 0.92899 0.86484 7.7555 5 0 Median 0.92745 0.83776 19.939 6 0 Median 0.83175 0.88513 11.044 6 2 Median 0.93191 0.88344 14.395 9 0 Median 0.97785 1.0441 NaN 1 0 Median 0.94999 0.82634 9.5385 2 0 Median 2494900000 1272800000 1222100000 384920000 195400000 189520000 162720000 83421000 79299000 487900000 258730000 229170000 1426200000 719690000 706480000 18591000 8851100 9739800 14579000 6705800 7873500 23469 4360 24471 123746;123747;123748;123749;123750;123751;123752;123753;123754;123755;123756;123757;123758;123759;123760;123761;123762;123763;123764;123765;123766;123767;123768;123769;123770;123771;123772;123773;123774 124880;124881;124882;124883;124884;124885;124886;124887;124888;124889;124890;124891;124892;124893;124894;124895;124896;124897;124898;124899;124900;124901;124902;124903;124904;124905;124906;124907;124908;124909;124910;124911;124912;124913;124914;124915;124916;124917;124918;124919;124920;124921;124922;124923;124924;124925 124915 46 LVLACEDVR NLKKVAFDVKMENEKLVLACEDVRHQLEEC KMENEKLVLACEDVRHQLEECLAGNNQLSL K L V V R H 1 1 0 1 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1073.5539 H0YJ97;Q15643 H0YJ97 398 406 TRIP11 Thyroid receptor-interacting protein 11 yes no 2 0.019639 39.663 By MS/MS 1 1.3974 1.1595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3974 1.1595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4424100 1719100 2705000 0 0 0 0 0 0 0 0 0 4424100 1719100 2705000 0 0 0 0 0 0 23470 1186 24472 123775 124926;124927 124927 2 LVLDAFALPLTNLFK YRHEFKSNELWTEIKLVLDAFALPLTNLFK LVLDAFALPLTNLFKATIELCSTHANDASA K L V F K A 2 0 1 1 0 0 0 0 0 0 5 1 0 2 1 0 1 0 0 1 0 0 15 0 1673.9756 P55060 P55060 175 189 CSE1L Exportin-2 yes yes 2 0.023073 26.043 By matching By MS/MS By matching 1 1 1 1.1071 0.94998 62.486 3 Median 0.76803 0.73638 NaN 1 0 Median 1.1071 0.94998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3487 2.4131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1634800 630870 1004000 118720 61509 57215 901640 398020 503620 0 0 0 0 0 0 614470 171340 443130 0 0 0 23471 2493 24473 123776;123777;123778 124928 124928 1 LVLDPYLLK IGTKMQKTAKVRVTRLVLDPYLLKYFNKRK KVRVTRLVLDPYLLKYFNKRKTYFAHDALQ R L V L K Y 0 0 0 1 0 0 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 9 0 1072.6532 I3L0E3;E9PE17;Q9Y2R5 I3L0E3 128 136 hCG_1984214;MRPS17 28S ribosomal protein S17, mitochondrial yes no 2 0.014496 44.447 By MS/MS By MS/MS 2 1 1.3243 1.1404 15.078 3 Median NaN NaN NaN 0 0 Median 1.3786 1.1881 5.7961 2 0 Median 0.95317 0.92406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7032000 3162000 3869900 0 0 0 2435200 987530 1447700 4596700 2174500 2422200 0 0 0 0 0 0 0 0 0 23472 1268 24474 123779;123780;123781 124929;124930;124931 124931 3 LVLDQLR IVPNHEKRAGKLEPRLVLDQLRCNGVLEGI RAGKLEPRLVLDQLRCNGVLEGIRICRQGF R L V L R C 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 855.5178 Q7Z406 Q7Z406 711 717 MYH14 Myosin-14 no no 2 0.014908 73.039 By MS/MS By MS/MS 1 1 1.2342 1.1214 12.649 2 Median 1.2705 1.2263 NaN 1 0 Median 1.199 1.0254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8825300 3950000 4875300 4096400 1760200 2336200 4728900 2189800 2539100 0 0 0 0 0 0 0 0 0 0 0 0 23473 3242 24475 123782;123783 124932;124933;124934 124932 3 LVLDSVKLEA NEKDLEEAEEYKEARLVLDSVKLEA_____ YKEARLVLDSVKLEA_______________ R L V E A - 1 0 0 1 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 2 0 0 10 1 1085.6332 E5RIW3;E5RJD8;O75347;E5RHG6;E5RIX8 E5RIW3 75 84 TBCA Tubulin-specific chaperone A yes no 2 0.023869 51.066 By MS/MS By matching By matching By matching By matching 4 1 1 1 1 1.1607 1.0515 26.51 8 Median 1.148 1.0515 38.479 4 0 Median 1.3299 1.0883 NaN 1 0 Median 1.1415 1.0887 NaN 1 0 Median 1.2598 1.0256 NaN 1 0 Median 0.92358 0.98869 NaN 1 0 Median NaN NaN NaN 0 0 Median 466710000 206850000 259870000 305130000 138650000 166470000 140890000 58900000 81989000 18215000 8272100 9942800 1300600 577930 722710 1180800 442710 738140 0 0 0 23474 852 24476 123784;123785;123786;123787;123788;123789;123790;123791 124935 124935 1 LVLDTVNEVSR QQRQKELKKEVMEHRLVLDTVNEVSRALLE MEHRLVLDTVNEVSRALLELVPWRAREGLD R L V S R A 0 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 11 0 1243.6772 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5721 5731 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 5.0368E-08 134.68 By MS/MS By MS/MS 2 1 0.89359 0.86406 9.7273 3 Median 0.88187 0.85282 1.8522 2 2 Median 1.2595 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116690000 58488000 58206000 94313000 48805000 45508000 22381000 9682900 12698000 0 0 0 0 0 0 0 0 0 0 0 0 23475 1220 24477 123792;123793;123794 124936;124937;124938;124939 124937 4 LVLDWDSVR VEIPNIQKQRKQLARLVLDWDSVRARWNQA RKQLARLVLDWDSVRARWNQAHKSSGTNFQ R L V V R A 0 1 0 2 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 2 0 0 9 0 1101.5819 Q68EM7;C9IZD3;I3L4P6 Q68EM7 144 152 ARHGAP17 Rho GTPase-activating protein 17 yes no 2 0.057789 43.246 By MS/MS 1 0.94393 1.0092 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94393 1.0092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2265200 1255900 1009400 0 0 0 0 0 0 2265200 1255900 1009400 0 0 0 0 0 0 0 0 0 23476 3127 24478 123795 124940 124940 1 LVLEMVHHNTASLEK VAELLKEEFPAWYEKLVLEMVHHNTASLEK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV K L V E K L 1 0 1 0 0 0 2 0 2 0 3 1 1 0 0 1 1 0 0 2 0 0 15 0 1719.8978 Q9UIG0 Q9UIG0 87 101 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 2.7542E-09 100.55 By matching By MS/MS By MS/MS 1 6 5 1.1723 1.0077 27.211 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3349 1.9703 NaN 1 0 Median 0.97446 1.0077 18.616 5 0 Median 1.2281 0.97413 22.955 5 0 Median 68809000 33816000 34992000 0 0 0 0 0 0 0 0 0 1339200 355290 983960 61931000 30959000 30972000 5538600 2502200 3036400 23477 4290 24479;24480 123796;123797;123798;123799;123800;123801;123802;123803;123804;123805;123806;123807 124941;124942;124943;124944;124945;124946;124947;124948;124949 124945 1919 9 LVLEQVVTSIASVADTAEEK IMVLKLQELIQKGTKLVLEQVVTSIASVAD VVTSIASVADTAEEKFVPYYDLFMPSLKHI K L V E K F 3 0 0 1 0 1 3 0 0 1 2 1 0 0 0 2 2 0 0 4 0 0 20 0 2101.1154 O00410;H0Y8C6 O00410 507 526 IPO5 Importin-5 yes no 3 0.00011198 36.856 By MS/MS By matching By matching 2 1 1 1.1646 0.96331 17.345 4 Linear 1.1132 1.1125 1.1722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94121 0.84106 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9853 0.80931 NaN 1 0 Median 4303100 1870300 2432800 4127000 1804700 2322300 0 0 0 0 0 0 60119 24990 35129 0 0 0 116000 40608 75389 23478 1460 24481 123808;123809;123810;123811 124950;124951 124950 2 LVLETLSK PFSTLGPNAVLSPQRLVLETLSKLSIQDNN AVLSPQRLVLETLSKLSIQDNNVDLILATP R L V S K L 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 8 0 901.54843 O14497;H0Y488;A0A1B0GTU5 O14497 2117 2124 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.0031222 101.28 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 0.96424 0.90937 24.972 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89956 0.97231 21.239 4 0 Median 1.3097 1.1836 41.081 3 0 Median 0.80561 0.84783 NaN 1 1 Median 1.0595 0.90937 NaN 1 0 Median 39831000 19810000 20021000 0 0 0 0 0 0 30722000 15546000 15176000 4882600 2163800 2718800 3318900 1675200 1643700 907050 425370 481680 23479 1480 24482 123812;123813;123814;123815;123816;123817;123818;123819;123820 124952;124953;124954;124955;124956;124957;124958;124959 124952 8 LVLEVAQHLGESTVR PPILNALEVQGRETRLVLEVAQHLGESTVR LVLEVAQHLGESTVRTIAMDGTEGLVRGQK R L V V R T 1 1 0 0 0 1 2 1 1 0 3 0 0 0 0 1 1 0 0 3 0 0 15 0 1649.9101 P06576 P06576 95 109 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2;3 1.6904E-10 122.51 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 4 3 1 1 1 1.1832 1.0875 23.031 15 Median 1.0554 0.98567 7.1419 5 1 Median 1.3848 1.1703 15.139 4 0 Median 1.0845 1.1058 5.6125 3 0 Median 1.6006 1.4039 NaN 1 0 Median 2.1858 2.1906 NaN 1 0 Median 1.1864 1.0444 NaN 1 0 Median 294020000 141380000 152640000 245370000 119410000 125960000 15300000 6048800 9251500 28259000 14070000 14190000 180680 77033 103640 4504600 1631500 2873000 398170 139400 258770 23480 1872 24483 123821;123822;123823;123824;123825;123826;123827;123828;123829;123830;123831;123832;123833;123834;123835 124960;124961;124962;124963;124964;124965;124966;124967;124968;124969;124970;124971;124972;124973;124974 124964 14 LVLEVLQK NLEYPSPSEVFTKIRLVLEVLQKQLLDLPL EVFTKIRLVLEVLQKQLLDLPLDTDLENEK R L V Q K Q 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 8 0 940.59572 O43264 O43264 298 305 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.0079875 64.757 By MS/MS By matching 2 2 1.3711 1.2847 12.355 4 Median 1.1813 1.1617 17.701 2 0 Median 1.4569 1.297 4.818 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7422200 3284600 4137700 5116700 2336900 2779800 2305600 947700 1357900 0 0 0 0 0 0 0 0 0 0 0 0 23481 1562 24484 123836;123837;123838;123839 124975;124976 124975 2 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEK PDVTRPEGKDFSIHRLVLGTHTSDEQNHLV NDDAQFDASHYDSEKGEFGGFGSVSGKIEI R L V E K G 3 0 2 5 0 3 2 1 3 1 4 1 0 1 1 4 2 0 1 3 0 0 37 0 4092.9301 Q09028;E9PNS6;C9JPP3;E9PND5 Q09028 66 102 RBBP4 Histone-binding protein RBBP4 yes no 4;5 7.903E-24 67.345 By MS/MS By matching 2 3 0.73133 0.69984 14.995 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73136 0.69927 0.11459 2 0 Median NaN NaN NaN 0 0 Median 0.65097 0.91735 19.704 3 0 Plateau NaN NaN NaN 0 0 Median 101030000 47757000 53276000 0 0 0 0 0 0 95282000 44566000 50716000 0 0 0 5751700 3191600 2560100 0 0 0 23482 2746 24485 123840;123841;123842;123843;123844 124977;124978 124977 2 LVLIGSNHSLPFLK MAQAGFGVYTKKTTKLVLIGSNHSLPFLKF KLVLIGSNHSLPFLKFATNEAIQRTEAYEY K L V L K F 0 0 1 0 0 0 0 1 1 1 4 1 0 1 1 2 0 0 0 1 0 0 14 0 1536.9028 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1760 1773 SEC16A Protein transport protein Sec16A yes no 2 0.0074719 35.959 By MS/MS By matching 1 1 1.0466 0.96048 4.9425 2 Median 1.0533 0.99464 NaN 1 0 Median 1.04 0.92749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2452000 1250300 1201700 2122200 1030600 1091600 329850 219700 110150 0 0 0 0 0 0 0 0 0 0 0 0 23483 1513 24486 123845;123846 124979;124980 124979 2 LVLILNK CPQVEEAIVQSGQKKLVLILNKSDLVPKEN IVQSGQKKLVLILNKSDLVPKENLESWLNY K L V N K S 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 7 0 811.55312 Q9BVP2 Q9BVP2 173 179 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.013448 76.347 By matching By MS/MS 1 3 0.94902 0.94008 13.623 4 Median NaN NaN NaN 0 0 Median 1.3299 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0007 0.96177 7.7891 3 0 Plateau NaN NaN NaN 0 0 Median 11199000 4970200 6229100 0 0 0 2732400 1039500 1692900 0 0 0 0 0 0 8466900 3930700 4536100 0 0 0 23484 3858 24487 123847;123848;123849;123850 124981;124982 124982 2 LVLLELNFLPTTGTK SPNLSKCGEELGRLKLVLLELNFLPTTGTK LVLLELNFLPTTGTKLTKQQLILARDILEI K L V T K L 0 0 1 0 0 0 1 1 0 0 5 1 0 1 1 0 3 0 0 1 0 0 15 0 1657.9655 R4GMR5;P48556;K7EJR3;K7ENY6 R4GMR5 58 72 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 3.3282E-10 110.86 By MS/MS 2 0.93181 0.79575 7.2669 2 Median NaN NaN NaN 0 0 Median 0.93181 0.79575 7.2669 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4487700 2259800 2227900 0 0 0 4487700 2259800 2227900 0 0 0 0 0 0 0 0 0 0 0 0 23485 2362 24488 123851;123852 124983;124984 124984 2 LVLLFSGK ______________________________ PLGGAPRLVLLFSGKRKSGKDFVTEALQSR R L V G K R 0 0 0 0 0 0 0 1 0 0 3 1 0 1 0 1 0 0 0 1 0 0 8 0 875.54804 Q15126 Q15126 10 17 PMVK Phosphomevalonate kinase yes yes 2 0.01208 55.676 By MS/MS By MS/MS 2 1 1.2123 1.1277 8.6036 3 Median 1.1263 1.0546 9.4824 2 0 Median NaN NaN NaN 0 0 Median 1.223 1.1578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9475100 4121700 5353400 8442200 3690400 4751900 0 0 0 1032800 431360 601470 0 0 0 0 0 0 0 0 0 23486 2931 24489 123853;123854;123855 124985;124986;124987 124986 3 LVLLGESAVGK RPNGPAAGNKICQFKLVLLGESAVGKSSLV CQFKLVLLGESAVGKSSLVLRFVKGQFHEY K L V G K S 1 0 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 11 0 1084.6492 P51148;K7ERI8;K7ERQ8;F8VVK3;F8VVZ0;F8VWU4;F8WCY6;F8WD79;F8VPW9;F8VSF8;F8VWZ7;P20339;P61020;F8VUA5 P51148 24 34 RAB5C;RAB5B;RAB5A Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 2 0.00014653 83.948 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 4 3 1 1 2 2 1.3086 1.1271 27.216 13 Median 1.1349 1.0581 4.6698 4 0 Median 1.3803 1.1428 2.7888 3 0 Plateau 1.2021 1.1271 NaN 1 0 Median 1.3777 1.1414 NaN 1 0 Median 2.1534 2.235 10.929 2 0 Median 1.5173 1.2372 0.15155 2 0 Median 318980000 143360000 175620000 212790000 100500000 112280000 63973000 27026000 36947000 22754000 9347400 13407000 3528900 1461100 2067800 14358000 4471800 9885900 1579800 543750 1036000 23487 2427;2078;2538 24490 123856;123857;123858;123859;123860;123861;123862;123863;123864;123865;123866;123867;123868 124988;124989;124990;124991;124992;124993;124994;124995;124996;124997 124988 10 LVLLNMPGPPR VKLNEVIVTRSHDARLVLLNMPGPPRNSEG HDARLVLLNMPGPPRNSEGDENYMEFLEVL R L V P R N 0 1 1 0 0 0 0 1 0 0 3 0 1 0 3 0 0 0 0 1 0 0 11 0 1205.6954 I3L4N6;Q9UP95;B3KXX3;Q9UHW9;A0A1B0GVB1;Q9H2X9 I3L4N6 990 1000 SLC12A4;SLC12A6;SLC12A5 Solute carrier family 12 member 4;Solute carrier family 12 member 6;Solute carrier family 12 member 5 yes no 2 0.00011213 124.08 By MS/MS By matching 1 1 0.68955 0.67658 46.228 2 Median 0.48862 0.48793 NaN 1 0 Median 0.97312 0.93817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6029800 4131300 1898400 5843300 4043200 1800100 186450 88123 98332 0 0 0 0 0 0 0 0 0 0 0 0 23488 1293 24491 123869;123870 124998 124998 1 LVLLTASK EVIPAAPRKPRKFSKLVLLTASKDSTKVAG KPRKFSKLVLLTASKDSTKVAGAKRKGVHC K L V S K D 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 8 0 843.54295 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 42 49 FLYWCH2 FLYWCH family member 2 yes no 2 0.0035558 89.046 By matching By MS/MS By MS/MS 1 1 2 1.1085 0.97377 17.452 4 Median 1.0263 0.95994 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76939 0.72524 NaN 1 0 Median 1.2654 1.0371 6.8936 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11536000 5916800 5618800 3761800 1888800 1873000 0 0 0 5700800 3083900 2617000 2073000 944210 1128800 0 0 0 0 0 0 23489 1280 24492 123871;123872;123873;123874 124999;125000;125001;125002 125000 4 LVLMSATGDNER LILLKGLQRLNPALRLVLMSATGDNERFSR ALRLVLMSATGDNERFSRYFGGCPVIKVPG R L V E R F 1 1 1 1 0 0 1 1 0 0 2 0 1 0 0 1 1 0 0 1 0 0 12 0 1304.6395 H7BXY3;Q7L2E3 H7BXY3 559 570 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 3.5626E-06 154.56 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.0654 1.1225 24.851 5 Median 0.7195 0.69326 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0654 1.1716 NaN 1 0 Median 1.3193 1.1225 NaN 1 0 Median 1.1675 1.2247 NaN 1 1 Median 1.0202 0.83066 NaN 1 0 Median 28103000 13744000 14359000 11062000 5982900 5078600 0 0 0 8322400 3392500 4929900 2765500 1295700 1469800 4106800 2160000 1946800 1846600 912640 933940 23490 1244 24493 123875;123876;123877;123878;123879 125003;125004;125005 125003 3 LVLPAPQISDAELQEVVK LQTSGVSEFTKKRSKLVLPAPQISDAELQE PAPQISDAELQEVVKVGQASEIARQTAEES K L V V K V 2 0 0 1 0 2 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 18 0 1948.0881 Q99459 Q99459 295 312 CDC5L Cell division cycle 5-like protein yes yes 2 5.6025E-09 97.86 By matching By MS/MS By MS/MS By matching 1 1 3 3 0.79666 0.73583 22.802 8 Median 1.2006 1.2072 NaN 1 0 Median 0.85563 0.74767 NaN 1 0 Median 0.62243 0.66442 13.767 3 0 Median 0.82804 0.72417 18.641 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32393000 18237000 14156000 1606700 850470 756200 9018700 4553200 4465500 19147000 11301000 7845800 2620300 1532200 1088100 0 0 0 0 0 0 23491 3745 24494 123880;123881;123882;123883;123884;123885;123886;123887 125006;125007 125006 2 LVLPSNTPNVR SKQSKVIPKNRIHHKLVLPSNTPNVRRTKR IHHKLVLPSNTPNVRRTKRTRLKPLEYWRG K L V V R R 0 1 2 0 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 2 0 0 11 0 1208.6877 Q03188;H0Y8J2;H0Y9W1 Q03188 728 738 CENPC Centromere protein C yes no 2 0.0049573 67.993 By MS/MS 1 0.59598 0.62385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59598 0.62385 NaN 1 1 Median NaN NaN NaN 0 0 Median 4633300 3256100 1377200 0 0 0 0 0 0 0 0 0 0 0 0 4633300 3256100 1377200 0 0 0 23492 1162 24495 123888 125008 125008 1 LVLPSQAQAR QAPSHAAGQSALPQRLVLPSQAQARLPSGE ALPQRLVLPSQAQARLPSGEVVKIAQLASI R L V A R L 2 1 0 0 0 2 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 10 0 1081.6244 Q96L91 Q96L91 1588 1597 EP400 E1A-binding protein p400 yes yes 2 0.00065672 110.31 By MS/MS By MS/MS By matching 2 1 1 0.79625 0.86778 9.4185 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75529 0.81671 1.0322 2 0 Median 0.82798 0.72073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81091 0.67665 NaN 1 0 Median 21593000 12005000 9588500 0 0 0 0 0 0 18606000 10368000 8238500 1595300 941900 653390 0 0 0 1392000 695410 696630 23493 3700 24496 123889;123890;123891;123892 125009;125010;125011;125012 125012 4 LVLQDHQAFR WTKPNAFHVCITSYKLVLQDHQAFRRKNWR ITSYKLVLQDHQAFRRKNWRYLILDEAQNI K L V F R R 1 1 0 1 0 2 0 0 1 0 2 0 0 1 0 0 0 0 0 1 0 0 10 0 1225.6568 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 727 736 SRCAP Helicase SRCAP yes no 3 0.00050508 75.294 By MS/MS 1 8.6652 7.5592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8.6652 7.5592 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19295000 1199600 18096000 0 0 0 0 0 0 0 0 0 19295000 1199600 18096000 0 0 0 0 0 0 23494 3199 24497 123893 125013 125013 1 LVLSSLPK EDGEGAGPGEQGGGKLVLSSLPKRLCLVCG GEQGGGKLVLSSLPKRLCLVCGDVASGYHY K L V P K R 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 2 0 0 0 1 0 0 8 0 855.54295 P11474;F5GWT5 P11474 69 76 ESRRA Steroid hormone receptor ERR1 yes no 2 0.0078694 65.252 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2051 1.1281 9.7457 4 Median NaN NaN NaN 0 0 Median 1.4692 1.2315 NaN 1 0 Median 1.2183 1.1933 NaN 1 0 Median 1.192 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1655 0.99902 NaN 1 0 Median 14728000 6152700 8575500 0 0 0 4144400 1679600 2464700 6404600 2660300 3744300 3971300 1723100 2248200 0 0 0 207940 89688 118250 23495 1966 24498 123894;123895;123896;123897 125014;125015 125015 2 LVLSTLSGRPVK AHSLSYAGCNFLRQRLVLSTLSGRPVKIRK RQRLVLSTLSGRPVKIRKIRARDDNPGLRD R L V V K I 0 1 0 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 2 0 0 12 1 1268.7816 Q9Y2P8;Q5VYW8 Q9Y2P8 20 31 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2;3 4.5157E-05 89.247 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 7 6 0.99125 1.0645 16.651 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72322 0.79958 14.846 3 1 Median 1.3132 1.1474 3.9829 2 0 Median 0.98222 1.096 8.8254 7 0 Median 1.1178 0.96619 16.387 6 0 Median 85100000 41368000 43732000 0 0 0 0 0 0 9370700 5109800 4260900 5105100 2158600 2946500 56525000 28060000 28466000 14099000 6039900 8058900 23496 4385 24499 123898;123899;123900;123901;123902;123903;123904;123905;123906;123907;123908;123909;123910;123911;123912;123913;123914;123915;123916 125016;125017;125018;125019;125020;125021;125022;125023;125024;125025 125019 10 LVLTNNQLTTLPR ESLPNEIAYLKDLQKLVLTNNQLTTLPRGI QKLVLTNNQLTTLPRGIGHLTNLTHLGLGE K L V P R G 0 1 2 0 0 1 0 0 0 0 4 0 0 0 1 0 3 0 0 1 0 0 13 0 1481.8566 Q9UQ13;X6RI37 Q9UQ13 476 488 SHOC2 Leucine-rich repeat protein SHOC-2 yes no 2 6.7811E-07 163.64 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0136 0.9086 9.4748 4 Median 0.9127 0.878 NaN 1 0 Median 1.18 1.024 NaN 1 0 Median 0.81343 0.82066 NaN 1 0 Median 1.1256 0.94028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20863000 10408000 10455000 6861800 3432800 3429000 3578900 1686700 1892200 9117500 4628700 4488800 1304800 660240 644590 0 0 0 0 0 0 23497 4358 24500 123917;123918;123919;123920 125026;125027;125028;125029 125026 4 LVLTQEQLHQLHSR KVTFSCAAGFGQRHRLVLTQEQLHQLHSRL RLVLTQEQLHQLHSRLIS____________ R L V S R L 0 1 0 0 0 3 1 0 2 0 4 0 0 0 0 1 1 0 0 1 0 0 14 0 1700.9322 E7EX90;Q14203;E7EWF7 E7EX90 1240 1253 DCTN1 Dynactin subunit 1 yes no 2;3;4 5.5046E-24 135.66 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 3 3 3 1 1.1061 1.0379 12.73 13 Median 1.1069 1.0386 6.9591 4 0 Median 1.3385 1.1135 1.3248 3 1 Plateau 0.85683 0.94194 12.542 2 1 Median 0.96061 0.81806 16.205 3 0 Median 0.95523 0.99016 NaN 1 0 Median NaN NaN NaN 0 0 Median 171850000 81398000 90451000 83000000 39888000 43112000 36780000 16748000 20032000 37957000 18122000 19835000 6977500 3513500 3464000 7133900 3126800 4007100 0 0 0 23498 906 24501 123921;123922;123923;123924;123925;123926;123927;123928;123929;123930;123931;123932;123933;123934;123935 125030;125031;125032;125033;125034;125035;125036;125037;125038;125039;125040;125041;125042;125043;125044;125045;125046;125047;125048 125034 18 LVLVGDGGTGK ______________________________ VQFKLVLVGDGGTGKTTFVKRHLTGEFEKK K L V G K T 0 0 0 1 0 0 0 4 0 0 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1014.571 B5MDF5;P62826;J3KQE5;H0YFC6 B5MDF5 13 23 RAN GTP-binding nuclear protein Ran yes no 2 0.00011205 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 8 6 5 7 9 1.2187 1.1025 14.727 43 Median 1.1626 1.0886 18.1 9 0 Median 1.1683 1.0008 11.944 8 0 Median 1.1668 1.1223 8.8306 5 0 Median 1.3416 1.1127 6.1355 5 0 Median 1.2198 1.294 9.5826 7 0 Median 1.3155 1.0846 10.789 9 0 Median 1515500000 686200000 829280000 384240000 174880000 209360000 122930000 53543000 69382000 726430000 333970000 392460000 115980000 50453000 65523000 126040000 56596000 69443000 39865000 16756000 23109000 23499 623 24502 123936;123937;123938;123939;123940;123941;123942;123943;123944;123945;123946;123947;123948;123949;123950;123951;123952;123953;123954;123955;123956;123957;123958;123959;123960;123961;123962;123963;123964;123965;123966;123967;123968;123969;123970;123971;123972;123973;123974;123975;123976;123977;123978;123979 125049;125050;125051;125052;125053;125054;125055;125056;125057;125058;125059;125060;125061;125062;125063;125064;125065;125066;125067;125068;125069;125070;125071;125072;125073;125074;125075;125076;125077;125078;125079;125080;125081;125082;125083;125084;125085;125086;125087;125088;125089;125090;125091;125092;125093;125094;125095;125096;125097;125098;125099;125100;125101;125102;125103;125104;125105;125106;125107;125108;125109;125110;125111;125112;125113;125114;125115 125058 66 LVLVNAVYFR IAELLSPGSVDPLTRLVLVNAVYFRGNWDE DPLTRLVLVNAVYFRGNWDEQFDKENTEER R L V F R G 1 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 1 3 0 0 10 0 1192.6968 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 165 174 SERPINB6 Serpin B6 yes no 2 0.00073033 100.45 By MS/MS By matching By matching 1 2 2 0.98618 0.97947 11.142 5 Median 0.98618 0.97947 NaN 1 0 Median 1.1955 1.0549 10.116 2 0 Median 0.87762 0.8829 8.693 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17121000 7933400 9187900 7537400 3806700 3730700 7927200 3319500 4607700 1656700 807110 849540 0 0 0 0 0 0 0 0 0 23500 1 24503 123980;123981;123982;123983;123984 125116;125117 125117 2 LVLVSPTSEQYDSLLR GEALNGEPELDLTSKLVLVSPTSEQYDSLL VLVSPTSEQYDSLLRQMWERMDEGCGETIY K L V L R Q 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 3 1 0 1 2 0 0 16 0 1818.9727 O00178 O00178 65 80 GTPBP1 GTP-binding protein 1 yes yes 2 7.0748E-05 76.655 By matching By MS/MS By MS/MS By matching 1 1 1 2 0.83599 0.80484 33.646 5 Median 1.0897 1.0925 NaN 1 0 Median 0.50298 0.43469 NaN 1 1 Median 0.78663 0.81869 NaN 1 0 Median 0.89139 0.76103 7.9154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16720000 8815900 7904400 1218500 570690 647830 9164800 5503700 3661100 5723400 2445300 3278100 613540 296190 317350 0 0 0 0 0 0 23501 1446 24504 123985;123986;123987;123988;123989 125118;125119 125118 2 LVLWDINK IGRLTAYEFAKLKSKLVLWDINKHGLEETA FAKLKSKLVLWDINKHGLEETAAKCKGLGA K L V N K H 0 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 1 0 1 0 0 8 0 999.57532 D6RCD0;Q8NBQ5 D6RCD0 63 70 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 0.020415 46.426 By MS/MS By MS/MS By matching 1 3 1 1.4659 1.2676 12.376 5 Median 1.4841 1.4214 NaN 1 0 Median 1.7562 1.4733 12.291 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3109 1.1119 NaN 1 0 Median 10022000 3467900 6553800 4830100 1618400 3211800 4256200 1489200 2767000 0 0 0 0 0 0 0 0 0 935410 360350 575070 23502 819 24505 123990;123991;123992;123993;123994 125120;125121;125122 125120 3 LVLYDRPLK RRPEDARAAKHARGRLVLYDRPLKIEAVYV KHARGRLVLYDRPLKIEAVYVSRRRSRSPL R L V L K I 0 1 0 1 0 0 0 0 0 0 3 1 0 0 1 0 0 0 1 1 0 0 9 1 1115.6703 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 194 202 RBM15 Putative RNA-binding protein 15 yes no 2 0.0052902 85.064 By MS/MS 1 0.94338 1.07 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94338 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8124800 4474300 3650600 0 0 0 0 0 0 8124800 4474300 3650600 0 0 0 0 0 0 0 0 0 23503 60 24506 123995 125123;125124 125123 2 LVLYPSAQEK EALESDPLHKELLEKLVLYPSAQEKVLQRS ELLEKLVLYPSAQEKVLQRSSVLQVSVLQS K L V E K V 1 0 0 0 0 1 1 0 0 0 2 1 0 0 1 1 0 0 1 1 0 0 10 0 1146.6285 F6T1Q0;Q6L8Q7 F6T1Q0 418 427 PDE12 2,5-phosphodiesterase 12 yes no 2 0.00036244 87.308 By MS/MS By MS/MS By matching 1 1 1 1.1178 0.93743 11.248 3 Median 0.90488 0.84892 NaN 1 0 Median 1.1178 0.93743 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2361 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22237000 10571000 11666000 12415000 6039900 6375000 9108700 4205300 4903300 0 0 0 713260 326020 387250 0 0 0 0 0 0 23504 1050 24507 123996;123997;123998 125125;125126;125127 125125 3 LVMAAANR GSLSLGHPFGATGCRLVMAAANRLRKEGGQ FGATGCRLVMAAANRLRKEGGQYGLVAACA R L V N R L 3 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 8 0 844.45891 P55084;F5GZQ3;B5MD38 P55084 437 444 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0036575 86.086 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2598 1.1543 14.917 4 Median 1.0832 1.0778 NaN 1 0 Median 1.4651 1.2363 NaN 1 0 Median 1.0477 1.052 NaN 1 0 Median 1.67 1.4548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14005000 6157000 7847600 1820000 851840 968110 7102900 2935800 4167100 3661500 1730400 1931000 1420300 638900 781400 0 0 0 0 0 0 23505 2496 24508 123999;124000;124001;124002 125128;125129;125130;125131;125132;125133 125132 6 LVMADKELYR CVMKHLPKVPEKKLKLVMADKELYRACAVE EKKLKLVMADKELYRACAVEVKRQIWQDNQ K L V Y R A 1 1 0 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 1 1 0 0 10 1 1236.6536 Q8WX92 Q8WX92 130 139 NELFB Negative elongation factor B yes yes 2;3 0.0030741 72.547 By MS/MS By MS/MS 1 1 1.3485 1.4314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3485 1.4314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3752800 1504800 2248100 0 0 0 0 0 0 3752800 1504800 2248100 0 0 0 0 0 0 0 0 0 23506 3514 24509 124003;124004 125134;125135;125136 125136 3 LVMAESEK RQVLEKEGESKELKRLVMAESEKSQKLEER ESKELKRLVMAESEKSQKLEERLRLLQAET R L V E K S 1 0 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 8 0 905.45282 A0A087WY61;Q14980 Q14980 1254 1261 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0045034 81.191 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.97787 0.9459 8.2572 5 Median NaN NaN NaN 0 0 Median 1.0672 0.9459 NaN 1 0 Median 0.91919 1.0158 NaN 1 0 Median 0.97787 0.89024 NaN 1 0 Median 0.84458 0.88413 NaN 1 0 Median 1.2467 1.0682 NaN 1 0 Median 27392000 13597000 13795000 0 0 0 2463700 1035600 1428100 10061000 5716100 4344500 980810 437880 542930 11341000 5291600 6048900 2546400 1116200 1430200 23507 2905;77 24510 124005;124006;124007;124008;124009 125137;125138;125139;125140;125141;125142;125143;125144;125145;125146 125140 10 LVMAGETTNSR PGSTVFTEDCNILLKLVMAGETTNSRGQRL ILLKLVMAGETTNSRGQRLPQKGDVEMLCG K L V S R G 1 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 2 0 0 1 0 0 11 0 1177.5761 P26358 P26358 1197 1207 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00096639 61.65 By matching By MS/MS By MS/MS 1 1 1 1.4109 1.2408 28.79 3 Median NaN NaN NaN 0 0 Median 1.889 1.6694 NaN 1 0 Median 0.85944 0.93872 NaN 1 0 Median 1.4109 1.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14344000 6934900 7408800 0 0 0 431450 210810 220640 10317000 5052000 5264900 3595300 1672000 1923300 0 0 0 0 0 0 23508 2142 24511 124010;124011;124012 125147;125148;125149 125148 3 LVMAQHMIR INMEQAPIQSEPRVRLVMAQHMIRDIQTLL SEPRVRLVMAQHMIRDIQTLLSRMETLPYL R L V I R D 1 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 0 1 0 0 9 0 1097.5838 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09 P46379 166 174 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.00064478 107.43 By MS/MS By MS/MS 2 3 1.0586 0.97259 49.351 4 Median 1.3806 1.3311 NaN 1 0 Median 0.85535 0.74001 49.968 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27316000 11231000 16086000 9037400 2513300 6524100 18279000 8717300 9561600 0 0 0 0 0 0 0 0 0 0 0 0 23509 8 24512 124013;124014;124015;124016;124017 125150;125151;125152;125153 125152 4 LVMEDGKMDPVAYR RKGKFSEGEATLRMKLVMEDGKMDPVAYRV KLVMEDGKMDPVAYRVKYTPHHRTGDKWCI K L V Y R V 1 1 0 2 0 0 1 1 0 0 1 1 2 0 1 0 0 0 1 2 0 0 14 1 1622.7796 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQQ5;A0A1B0GTT3 P47897 406 419 QARS Glutamine--tRNA ligase yes no 2;3 0.00045467 78.653 By MS/MS 3 0.92519 0.95025 10.276 3 Median 0.92519 0.95025 10.276 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41161000 21225000 19936000 41161000 21225000 19936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23510 2356 24513 124018;124019;124020 125154;125155;125156 125154 3 LVMEEAPESYK KLADMGIAIRVASPKLVMEEAPESYKNVTD ASPKLVMEEAPESYKNVTDVVNTCHDAGIS K L V Y K N 1 0 0 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 1 1 0 0 11 0 1294.6115 Q9Y3I0 Q9Y3I0 466 476 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00011268 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 1 1.0585 0.93007 8.6578 13 Median 0.96776 0.9116 2.8483 2 0 Median 1.1281 0.96549 10.313 2 0 Median 0.94246 0.90783 5.776 3 0 Median 1.0852 0.93007 11.651 5 0 Median NaN NaN NaN 0 0 Median 1.2374 1.0311 NaN 1 0 Median 164950000 81678000 83273000 26210000 13809000 12400000 11162000 5289900 5872400 69261000 35114000 34147000 56049000 26530000 29518000 0 0 0 2269500 935020 1334500 23511 4430 24514;24515 124021;124022;124023;124024;124025;124026;124027;124028;124029;124030;124031;124032;124033 125157;125158;125159;125160;125161;125162;125163;125164;125165;125166;125167;125168;125169;125170;125171;125172 125170 1981 16 LVNANGEAVYCK DGHRHMNGYGSHTFKLVNANGEAVYCKFHY TFKLVNANGEAVYCKFHYKTDQGIKNLSVE K L V C K F 2 0 2 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1336.6445 P04040 P04040 222 233 CAT Catalase yes yes 2 0.010377 56.563 By MS/MS 1 1.0129 0.8744 NaN 1 Median NaN NaN NaN 0 0 Median 1.0129 0.8744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1379600 681660 697960 0 0 0 1379600 681660 697960 0 0 0 0 0 0 0 0 0 0 0 0 23512 1841 24516 124034 125173 125173 1 LVNELTEFAK FSQYLQQCPFDEHVKLVNELTEFAKTCVAD DEHVKLVNELTEFAKTCVADESHAGCEKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1162.6234 CON__P02769 CON__P02769 66 75 yes yes 2 0.00058327 105.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 3 7 2 3 0.089505 0.078938 155.41 22 Median 0.091186 0.08584 202.81 8 8 Median 0.022036 0.018138 127.18 3 3 Median 0.098107 0.10045 81.713 6 4 Median 0.057888 0.046075 47.01 2 1 Median 0.22268 0.22286 93.015 3 1 Median NaN NaN NaN 0 0 Median 1368000000 1301500000 66496000 956590000 913850000 42741000 260800000 255980000 4821300 99916000 94138000 5777800 8900400 8276000 624450 41826000 29295000 12532000 0 0 0 + 23513 746 24517 124035;124036;124037;124038;124039;124040;124041;124042;124043;124044;124045;124046;124047;124048;124049;124050;124051;124052;124053;124054;124055;124056;124057 125174;125175;125176;125177;125178;125179;125180;125181;125182;125183;125184;125185;125186;125187;125188;125189;125190;125191;125192;125193;125194;125195 125181 22 LVNELTEK KQSAELNKLRQDYARLVNELTEKTGKLQQE LRQDYARLVNELTEKTGKLQQEEVQKKNAE R L V E K T 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 944.51786 Q86UP2 Q86UP2 458 465 KTN1 Kinectin yes yes 2 0.00054798 101.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 2 1.2479 1.0758 17.619 9 Median 0.96573 0.9541 25.844 3 0 Median 1.312 1.1073 NaN 1 1 Median 1.2479 1.3507 NaN 1 0 Median 1.1969 1.0478 19.278 2 0 Median NaN NaN NaN 0 0 Median 1.1789 0.99649 10.826 2 0 Median 34507000 15351000 19156000 7897500 3629500 4268000 17541000 7429800 10111000 2965200 1455800 1509400 3123000 1390800 1732300 0 0 0 2980300 1445000 1535200 23514 3280 24518 124058;124059;124060;124061;124062;124063;124064;124065;124066 125196;125197;125198;125199;125200;125201;125202 125199 7 LVNETFQK VKMIRRVNDEEGIKKLVNETFQKLWFTPTP DEEGIKKLVNETFQKLWFTPTPHNDKEAMT K L V Q K L 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 0 977.5182 A0A590UJS4;Q6KC79 A0A590UJS4 1905 1912 NIPBL Nipped-B-like protein yes no 2 0.0054254 75.854 By matching By MS/MS 1 1 1.0205 1.0242 8.503 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92521 1.0877 NaN 1 0 Median 1.1255 0.96445 NaN 1 0 Median 6246600 3048700 3197900 0 0 0 0 0 0 0 0 0 0 0 0 4048700 2063400 1985300 2197800 985280 1212600 23515 488 24519 124067;124068 125203;125204 125204 2 LVNEVTEFAK FAQYLQQCPFEDHVKLVNEVTEFAKTCVAD EDHVKLVNEVTEFAKTCVADESAENCDKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 10 0 1148.6077 A0A0C4DGB6;CON__P02768-1;P02768;A0A087WWT3;H7C013 A0A0C4DGB6 66 75 ALB Serum albumin yes no 2 0.027288 48.794 By MS/MS 2 0.20417 0.17074 86.28 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20417 0.17074 86.28 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2199400 1809500 389810 0 0 0 0 0 0 0 0 0 2199400 1809500 389810 0 0 0 0 0 0 + 23516 240 24520 124069;124070 125205;125206 125206 2 LVNEVYHMYNR FFINRRPCDPAKVCRLVNEVYHMYNRHQYP KVCRLVNEVYHMYNRHQYPFVVLNISVDSE R L V N R H 0 1 2 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 2 0 0 11 0 1436.6871 A0A2R8Y6S3;C9J167;P54278 A0A2R8Y6S3 170 180 PMS2 Mismatch repair endonuclease PMS2 yes no 3 0.052294 25.474 By MS/MS 1 0.84481 0.90511 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84481 0.90511 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3865300 2353200 1512100 0 0 0 0 0 0 3865300 2353200 1512100 0 0 0 0 0 0 0 0 0 23517 376 24521 124071 125207 125207 1 LVNHFVEEFK TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK DFDNRLVNHFVEEFKRKHKKDISQNKRAVR R L V F K R 0 0 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 10 0 1260.6503 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 238 247 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 0.00015684 130.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 6 6 7 1.4223 1.3153 22.017 35 Median 1.4263 1.3225 11.671 6 0 Median 1.3967 1.196 9.1818 5 0 Median 1.401 1.3555 13.133 5 0 Median 1.2615 1.0706 15.938 6 0 Median 1.5127 1.4929 17.722 6 0 Median 1.6018 1.3234 27.904 7 0 Median 1099100000 447270000 651880000 430880000 174110000 256770000 236590000 96098000 140500000 245690000 100720000 144970000 77898000 33460000 44438000 91299000 36677000 54622000 16786000 6212500 10573000 23518 278 24522 124072;124073;124074;124075;124076;124077;124078;124079;124080;124081;124082;124083;124084;124085;124086;124087;124088;124089;124090;124091;124092;124093;124094;124095;124096;124097;124098;124099;124100;124101;124102;124103;124104;124105;124106 125208;125209;125210;125211;125212;125213;125214;125215;125216;125217;125218;125219;125220;125221;125222;125223;125224;125225;125226;125227;125228;125229;125230;125231;125232;125233;125234;125235;125236;125237;125238;125239;125240;125241 125225 34 LVNHFVEEFKR TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK FDNRLVNHFVEEFKRKHKKDISQNKRAVRR R L V K R K 0 1 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 11 1 1416.7514 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 238 248 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 1.3652E-21 199.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 4 7 6 1.2977 1.239 18.192 30 Median 1.5166 1.4145 15.063 5 2 Plateau 1.2059 1.1015 12.112 4 0 Median 1.3514 1.5154 10.851 5 3 Median 1.2753 1.1829 6.5497 4 2 Median 1.3308 1.396 13.648 6 0 Median 1.3527 1.1383 18.108 6 0 Median 2900900000 1220600000 1680200000 756080000 297330000 458740000 1168700000 514090000 654660000 463650000 192100000 271550000 187260000 79948000 107310000 252830000 107010000 145820000 72295000 30160000 42135000 23519 278 24523 124107;124108;124109;124110;124111;124112;124113;124114;124115;124116;124117;124118;124119;124120;124121;124122;124123;124124;124125;124126;124127;124128;124129;124130;124131;124132;124133;124134;124135;124136;124137;124138 125242;125243;125244;125245;125246;125247;125248;125249;125250;125251;125252;125253;125254;125255;125256;125257;125258;125259;125260;125261;125262;125263;125264;125265;125266;125267;125268;125269;125270;125271;125272;125273;125274;125275;125276;125277;125278;125279;125280;125281;125282;125283;125284;125285;125286;125287;125288;125289;125290;125291;125292 125283 51 LVNHFVEEFKRK TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK DNRLVNHFVEEFKRKHKKDISQNKRAVRRL R L V R K H 0 1 1 0 0 0 2 0 1 0 1 2 0 2 0 0 0 0 0 2 0 0 12 2 1544.8463 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 238 249 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.00033092 58.172 By MS/MS 1 1.6188 1.7525 NaN 1 Median 1.6188 1.7525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10211000 4162000 6048800 10211000 4162000 6048800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23520 278 24524 124139 125293;125294 125293 2 LVNIRNDDIADGNPK NVQIALDYLRHRQVKLVNIRNDDIADGNPK LVNIRNDDIADGNPKLTLGLIWTIILHFQI K L V P K L 1 1 3 3 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 15 1 1652.8482 Q15149;H0YDN1;E9PMV1;E9PKG0;E9PQ28;E9PIA2 Q15149 254 268 PLEC Plectin yes no 3 0.036357 16.399 By MS/MS 1 0.92476 0.95537 NaN 1 Median 0.92476 0.95537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7001800 4078000 2923800 7001800 4078000 2923800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23521 2933 24525 124140 125295 125295 1 LVNLQHLDLLNNK LSKNKLQQLPADFGRLVNLQHLDLLNNKLV GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK R L V N K L 0 0 3 1 0 1 0 0 1 0 5 1 0 0 0 0 0 0 0 1 0 0 13 0 1532.8675 Q96AG4 Q96AG4 84 96 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 2.6933E-06 132.25 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 2 2 1.3711 1.1632 37.206 14 Median 1.286 1.1632 0.021664 2 0 Median 1.2756 1.0691 0.090787 2 0 Median 1.4277 1.3758 10.877 3 0 Plateau 1.3772 1.1598 16.751 3 0 Median 1.5744 1.5588 12.069 2 0 Median 0.78075 0.65842 90.763 2 0 Median 284010000 120440000 163580000 198210000 84672000 113540000 37494000 15700000 21794000 30693000 12983000 17710000 8711300 3591500 5119700 4478800 1754900 2723900 4424600 1736600 2688000 23522 3600 24526 124141;124142;124143;124144;124145;124146;124147;124148;124149;124150;124151;124152;124153;124154 125296;125297;125298;125299;125300;125301;125302;125303;125304;125305 125299 10 LVNNGEKLEFLHK LNPRSVAGGFVYTYKLVNNGEKLEFLHKTP YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG K L V H K T 0 0 2 0 0 0 2 1 1 0 3 2 0 1 0 0 0 0 0 1 0 0 13 1 1539.8409 Q15393 Q15393 930 942 SF3B3 Splicing factor 3B subunit 3 yes yes 3 2.2809E-05 86.028 By MS/MS By matching By MS/MS By matching 2 1 3 1 0.98067 1.1098 38.689 7 Median 0.6883 0.71188 51.758 2 0 Median 0.79843 0.76104 NaN 1 0 Median 1.0212 1.1819 20.542 3 0 Median NaN NaN NaN 0 0 Median 1.1687 1.2466 NaN 1 0 Median NaN NaN NaN 0 0 Median 66984000 33574000 33411000 15007000 8280400 6726800 6150000 2944800 3205200 41802000 20651000 21151000 0 0 0 4025100 1697500 2327600 0 0 0 23523 2946 24527 124155;124156;124157;124158;124159;124160;124161 125306;125307;125308;125309;125310 125307 5 LVNQQLLADPLVPPQLTIK IEGANYFQQANELSKLVNQQLLADPLVPPQ QLLADPLVPPQLTIKDFYMTDSISRASQTM K L V I K D 1 0 1 1 0 3 0 0 0 1 5 1 0 0 3 0 1 0 0 2 0 0 19 0 2099.2354 P28331;B4DJ81 P28331 674 692 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 3 0.031824 13.23 By MS/MS By matching By MS/MS 1 2 1 0.89353 0.84535 50.25 4 Median 0.56631 0.56953 NaN 1 0 Median 1.4177 1.2701 1.7207 2 0 Median 0.4689 0.50162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3626400 2204400 1422000 1325400 875330 450030 1148000 512650 635310 1153000 816420 336620 0 0 0 0 0 0 0 0 0 23524 2165 24528 124162;124163;124164;124165 125311;125312 125311 2 LVNQWIK LAALLNKCKTPQGQRLVNQWIKQPLMDKNR CKTPQGQRLVNQWIKQPLMDKNRIEERLNL R L V I K Q 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 7 0 899.52289 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 341 347 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0087724 85.306 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.94562 1.027 18.006 5 Median 0.8642 0.83911 NaN 1 0 Median 0.91641 0.81657 NaN 1 0 Median 0.94562 1.027 NaN 1 0 Median 1.3227 1.1443 NaN 1 0 Median 1.1839 1.2185 NaN 1 0 Median NaN NaN NaN 0 0 Median 32668000 16184000 16484000 7448300 3959300 3489000 1317800 673860 643920 16854000 8326700 8527700 5311300 2383500 2927800 1736500 840600 895870 0 0 0 23525 2324 24529 124166;124167;124168;124169;124170 125313;125314;125315;125316;125317 125317 5 LVNSQGQLR RGHRVIPAALKAFRRLVNSQGQLRVPVVFV LKAFRRLVNSQGQLRVPVVFVTNAGNILQH R L V L R V 0 1 1 0 0 2 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1013.5618 Q9BXW7 Q9BXW7 74 82 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 0.0007524 100.19 By matching By MS/MS By matching By matching 2 2 2 2 1.102 1.1057 29.045 8 Median 0.77166 0.81899 53.11 2 0 Median 1.4252 1.3174 18.601 2 0 Median 0.97325 1.0546 0.51542 2 0 Median 1.1409 1.0367 21.8 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6182800 2597300 3585500 755220 399050 356170 3796000 1397400 2398700 1023800 533770 490010 607750 267090 340660 0 0 0 0 0 0 23526 3882 24530 124171;124172;124173;124174;124175;124176;124177;124178 125318;125319 125319 2 LVNTGLLTLR SPIADDLLEKLVASRLVNTGLLTLRQIVLS LVASRLVNTGLLTLRQIVLSKVDQSLHTNT R L V L R Q 0 1 1 0 0 0 0 1 0 0 4 0 0 0 0 0 2 0 0 1 0 0 10 0 1098.6761 Q9BYT8;E9PCB6;H0YAK4;H0YAF7 Q9BYT8 568 577 NLN Neurolysin, mitochondrial yes no 2 0.00036244 87.308 By MS/MS By matching By matching 1 2 1 1.2725 1.1305 9.7669 4 Median 1.1675 1.1046 NaN 1 0 Median 1.3954 1.2087 6.1741 2 0 Median NaN NaN NaN 0 0 Median 1.2126 0.99872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18501000 8158700 10343000 12087000 5578700 6508700 6309400 2538000 3771400 0 0 0 104710 42035 62671 0 0 0 0 0 0 23527 3895 24531 124179;124180;124181;124182 125320;125321 125321 2 LVNTINPGAR NNLRESLMQFSKPRKLVNTINPGARFMTTA SKPRKLVNTINPGARFMTTAMYDAREAIIP K L V A R F 1 1 2 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1053.5931 Q92900 Q92900 930 939 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00031874 112.17 By MS/MS By MS/MS By matching 2 2 1 0.95713 0.862 7.3811 4 Median NaN NaN NaN 0 0 Median 0.94709 0.80966 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0092 0.862 6.6271 2 0 Median 0.83967 0.94383 NaN 1 0 Median NaN NaN NaN 0 0 Median 4706700 2050900 2655800 0 0 0 2709100 999800 1709300 0 0 0 993250 505400 487850 1004400 545750 458680 0 0 0 23528 3564 24532 124183;124184;124185;124186;124187 125322;125323;125324 125323 3 LVNTLNTIPSLGQSPGPVVVSNNSSAHGSQR KRPGVTGENSNEVAKLVNTLNTIPSLGQSP PVVVSNNSSAHGSQRTSGPESSMKVTSSIP K L V Q R T 1 1 4 0 0 2 0 3 1 1 3 0 0 0 3 6 2 0 0 4 0 0 31 0 3129.6167 Q7Z3K3;M0R2X2;H7C238 Q7Z3K3 320 350 POGZ Pogo transposable element with ZNF domain yes no 3 1.5538E-15 69.674 By MS/MS By MS/MS 1 2 0.53609 0.55652 6.3664 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46842 0.51525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54297 0.5704 3.4835 2 1 Median NaN NaN NaN 0 0 Median 14019000 9917300 4101700 0 0 0 0 0 0 5256000 3488000 1768000 0 0 0 8763000 6429300 2333700 0 0 0 23529 3241 24533 124188;124189;124190 125325;125326;125327 125327 3 LVNTTITPEPEPKPQPNSR DSDDDLDIASLVTAKLVNTTITPEPEPKPQ TITPEPEPKPQPNSREKAKTRGAPRTSLFE K L V S R E 0 1 2 0 0 1 2 0 0 1 1 1 0 0 5 1 3 0 0 1 0 0 19 1 2117.1117 Q86V48 Q86V48 673 691 LUZP1 Leucine zipper protein 1 yes yes 3 0.00018464 47.568 By MS/MS 1 0.59403 0.57087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59403 0.57087 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1784200 1044500 739680 0 0 0 0 0 0 0 0 0 1784200 1044500 739680 0 0 0 0 0 0 23530 3285 24534 124191 125328 125328 1 LVNYPGFNISTPR GEIQQNKSVTYDLSKLVNYPGFNISTPRGI SKLVNYPGFNISTPRGIPDEWRIFGSIPMQ K L V P R G 0 1 2 0 0 0 0 1 0 1 1 0 0 1 2 1 1 0 1 1 0 0 13 0 1476.7725 F5H6J5;F5GX80;Q6NZY4 F5H6J5 126 138 ZCCHC8 Zinc finger CCHC domain-containing protein 8 yes no 2 0.00049996 72.006 By MS/MS By matching 1 1 0.93884 1.0024 14.42 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0359 1.1101 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85088 0.90527 NaN 1 0 Median NaN NaN NaN 0 0 Median 4490500 2159800 2330700 0 0 0 0 0 0 2587400 1182300 1405200 0 0 0 1903100 977570 925510 0 0 0 23531 1006 24535 124192;124193 125329 125329 1 LVPDLLAIVQR QNISWKKTIVTRFLKLVPDLLAIVQRKKKE RFLKLVPDLLAIVQRKKKEGEEEQAINRQT K L V Q R K 1 1 0 1 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1235.7602 Q9H583;Q5T3Q7 Q9H583 1644 1654 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00042523 69.954 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.0317 1.0614 8.756 6 Median NaN NaN NaN 0 0 Median 1.1249 0.95215 NaN 1 0 Median 0.99034 1.0994 NaN 1 0 Median 1.1989 1.0498 NaN 1 0 Median 1.0205 1.0809 1.0411 2 0 Median 1.0422 0.88448 NaN 1 0 Median 9805800 4641500 5164300 0 0 0 2757500 1212300 1545200 1674600 797550 877040 277170 138010 139160 4971400 2439900 2531500 125150 53683 71466 23532 3086 24536 124194;124195;124196;124197;124198;124199 125330;125331;125332 125331 3 LVPDSDVR THPQYSRRFHKTLRRLVPDSDVRFLLSESG FHKTLRRLVPDSDVRFLLSESGSGKGAAMV R L V V R F 0 1 0 2 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 8 0 899.47125 P19367 P19367 434 441 HK1 Hexokinase-1 yes yes 2 0.0084743 62.717 By MS/MS By MS/MS By MS/MS 1 2 1 1.3184 1.1229 17.73 4 Median 0.84111 0.81327 NaN 1 0 Median 1.3184 1.1229 3.9806 2 0 Median NaN NaN NaN 0 0 Median 1.4085 1.203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20134000 8563600 11571000 5616300 2830800 2785600 13659000 5286800 8372600 0 0 0 858450 446080 412380 0 0 0 0 0 0 23533 2064 24537 124200;124201;124202;124203 125333;125334;125335;125336;125337;125338;125339 125336 7 LVPEAVGDQK DTAKFASSEKHSYGKLVPEAVGDQKALQEG HSYGKLVPEAVGDQKALQEGEGDLSISADR K L V Q K A 1 0 0 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1054.5659 P49589;B4DKY1 P49589 286 295 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.0034408 56.729 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.79001 0.71262 19.902 5 Median 0.89166 0.83192 NaN 1 0 Median 0.79001 0.69131 NaN 1 1 Median 0.81995 0.87135 28.439 2 0 Median 0.74741 0.64799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18593000 9923300 8669500 5709800 2928100 2781700 4172800 2336800 1836000 5622300 2930600 2691600 3087900 1727700 1360200 0 0 0 0 0 0 23534 2386 24538 124204;124205;124206;124207;124208 125340;125341;125342;125343;125344;125345;125346;125347 125341 8 LVPEEETTASENTEITSER SETKGSMQKSKFKYKLVPEEETTASENTEI EETTASENTEITSERQKEGIKLTIRISSRK K L V E R Q 1 1 1 0 0 0 6 0 0 1 1 0 0 0 1 2 4 0 0 1 0 0 19 0 2133.9914 Q96T23;H0YCN2 Q96T23 710 728 RSF1 Remodeling and spacing factor 1 yes no 2;3 1.448E-24 170.79 By MS/MS By MS/MS 3 2 0.95657 0.81591 15.555 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83303 0.85292 21.633 3 0 Median 0.96507 0.79682 3.3494 2 0 Median 36274000 19146000 17128000 0 0 0 0 0 0 0 0 0 0 0 0 33427000 17704000 15722000 2847300 1441600 1405700 23535 3740 24539 124209;124210;124211;124212;124213 125348;125349;125350;125351;125352 125349 5 LVPFDHAESTYGLYR PASLARWTLGFCDERLVPFDHAESTYGLYR LVPFDHAESTYGLYRTHLLSRLPIPESQVI R L V Y R T 1 1 0 1 0 0 1 1 1 0 2 0 0 1 1 1 1 0 2 1 0 0 15 0 1766.8628 O95336;M0R261;M0R0U3;M0R1L2 O95336 82 96 PGLS 6-phosphogluconolactonase yes no 2;3 3.388E-05 68.044 By MS/MS By MS/MS 3 2 0.78738 0.74738 21.004 4 Median 0.78738 0.74769 2.6963 2 1 Median 0.72237 0.61392 30.457 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88894000 63371000 25523000 83143000 58875000 24268000 5750600 4495600 1255000 0 0 0 0 0 0 0 0 0 0 0 0 23536 1764 24540 124214;124215;124216;124217;124218 125353;125354;125355;125356;125357;125358 125355 6 LVPGGGATEIELAK DDGVNTFKVLTRDKRLVPGGGATEIELAKQ RLVPGGGATEIELAKQITSYGETCPGLEQY R L V A K Q 2 0 0 0 0 0 2 3 0 1 2 1 0 0 1 0 1 0 0 1 0 0 14 0 1353.7504 P50990 P50990 408 421 CCT8 T-complex protein 1 subunit theta yes yes 2 8.4409E-08 99.522 By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 3 0.8103 0.7976 28.653 9 Median 1.0157 0.93324 4.5374 2 0 Median NaN NaN NaN 0 0 Median 0.91432 0.88534 NaN 1 1 Median 1.6844 1.4128 NaN 1 0 Median 0.56203 0.60618 7.8922 2 0 Median 0.79647 0.68282 14.725 3 0 Median 509060000 291090000 217970000 180420000 89108000 91316000 0 0 0 22069000 12068000 10000000 2670500 946880 1723600 243220000 154810000 88417000 60676000 34160000 26517000 23537 2423 24541 124219;124220;124221;124222;124223;124224;124225;124226;124227 125359;125360;125361;125362;125363;125364;125365;125366 125362 8 LVPGLQDSEEK LNLKLDRVMQDIVYKLVPGLQDSEEKRIRE IVYKLVPGLQDSEEKRIREFYQSRGLDRVT K L V E K R 0 0 0 1 0 1 2 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 0 1213.619 Q9BSM1 Q9BSM1 111 121 PCGF1 Polycomb group RING finger protein 1 yes yes 2 0.00016143 81.338 By MS/MS 1 0.9244 0.86687 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9244 0.86687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9997800 5562300 4435500 0 0 0 0 0 0 9997800 5562300 4435500 0 0 0 0 0 0 0 0 0 23538 3819 24542 124228 125367;125368 125368 2 LVPGLQDSEEKR LNLKLDRVMQDIVYKLVPGLQDSEEKRIRE VYKLVPGLQDSEEKRIREFYQSRGLDRVTQ K L V K R I 0 1 0 1 0 1 2 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 12 1 1369.7201 Q9BSM1 Q9BSM1 111 122 PCGF1 Polycomb group RING finger protein 1 yes yes 2;3 3.9014E-05 87.001 By MS/MS By MS/MS 2 1 0.90362 0.93819 13.398 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89645 0.92923 1.3568 2 0 Median 0.83283 0.73723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11710000 5942300 5768100 0 0 0 0 0 0 10107000 5113000 4994200 1603100 829330 773820 0 0 0 0 0 0 23539 3819 24543 124229;124230;124231 125369;125370;125371;125372;125373 125369 5 LVPGWTKPITIGR GTVFREPIICKNIPRLVPGWTKPITIGRHA PRLVPGWTKPITIGRHAHGDQYKATDFVAD R L V G R H 0 1 0 0 0 0 0 2 0 2 1 1 0 0 2 0 2 1 0 1 0 0 13 1 1436.8504 P48735 P48735 160 172 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2;3 0.00046666 57.348 By MS/MS By MS/MS By MS/MS 3 1 1 0.71668 0.71353 50.738 5 Median 0.71638 0.71334 4.5946 3 3 Median NaN NaN NaN 0 0 Median 0.81486 0.82583 NaN 1 0 Median 2.3213 2.2228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77475000 42836000 34639000 62084000 36196000 25887000 0 0 0 8122400 4604800 3517500 7268700 2034700 5234000 0 0 0 0 0 0 23540 2367 24544 124232;124233;124234;124235;124236 125374;125375;125376;125377;125378;125379 125379 6 LVPLDYGEDDKNATK KFEDEDSDDVPRKRKLVPLDYGEDDKNATK LVPLDYGEDDKNATKGTVNTEEKRKHIKSL K L V T K G 1 0 1 3 0 0 1 1 0 0 2 2 0 0 1 0 1 0 1 1 0 0 15 1 1676.8257 P49756 P49756 712 726 RBM25 RNA-binding protein 25 yes yes 2;3 4.323E-10 105.46 By MS/MS By MS/MS 3 2 0.71067 0.67697 30.47 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63094 0.68331 48.825 2 0 Median 0.71067 0.67697 20.013 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20903000 11511000 9391600 0 0 0 0 0 0 12677000 7277600 5399800 8225300 4233500 3991800 0 0 0 0 0 0 23541 2397 24545 124237;124238;124239;124240;124241 125380;125381;125382;125383;125384;125385 125383 6 LVPLKETIK QPFQVAEVFTGHMGKLVPLKETIKGFQQIL TGHMGKLVPLKETIKGFQQILAGEYDHLPE K L V I K G 0 0 0 0 0 0 1 0 0 1 2 2 0 0 1 0 1 0 0 1 0 0 9 1 1039.6641 P06576 P06576 481 489 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 0.0046732 86.833 By MS/MS By MS/MS By matching By matching 5 3 1 1 0.98927 0.91246 27.232 10 Median 0.93085 0.90231 5.4154 5 0 Median 1.2164 1.0992 13.468 3 0 Plateau 1.1491 1.2131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9088 2.0355 NaN 1 0 Median NaN NaN NaN 0 0 Median 62966000 31302000 31664000 41482000 21880000 19601000 17411000 7852800 9558000 1721700 806090 915580 0 0 0 2351500 762270 1589300 0 0 0 23542 1872 24546 124242;124243;124244;124245;124246;124247;124248;124249;124250;124251 125386;125387;125388;125389;125390;125391 125387 6 LVPLLDTGDIIIDGGNSEYR LLVKAGQAVDDFIEKLVPLLDTGDIIIDGG DTGDIIIDGGNSEYRDTTRRCRDLKAKGIL K L V Y R D 0 1 1 3 0 0 1 3 0 3 3 0 0 0 1 1 1 0 1 1 0 0 20 0 2159.111 P52209;K7EMN2;K7EM49 P52209 88 107 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2;3 8.4296E-06 49.12 By MS/MS By MS/MS By MS/MS 2 2 2 0.98896 0.90116 5.6289 6 Median 0.93388 0.92522 3.444 2 0 Median 1.0414 0.88595 2.126 2 0 Median 0.93803 0.93355 10.522 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17795000 8604300 9190600 5388000 2582800 2805200 8461200 4006200 4455000 3945800 2015300 1930400 0 0 0 0 0 0 0 0 0 23543 2447 24547 124252;124253;124254;124255;124256;124257 125392;125393;125394;125395;125396;125397 125395 6 LVPLLDTGDIIIDGGNSEYRDTTR LLVKAGQAVDDFIEKLVPLLDTGDIIIDGG IIIDGGNSEYRDTTRRCRDLKAKGILFVGS K L V T R R 0 2 1 4 0 0 1 3 0 3 3 0 0 0 1 1 3 0 1 1 0 0 24 1 2632.3344 P52209;K7EMN2;K7EM49 P52209 88 111 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 3 0.033972 12.554 By MS/MS By matching 1 1 1.1844 1.1303 12.307 2 Median 1.0259 1.036 NaN 1 0 Median 1.3673 1.233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9488800 4289000 5199800 6897900 3262600 3635300 2590900 1026400 1564500 0 0 0 0 0 0 0 0 0 0 0 0 23544 2447 24548 124258;124259 125398 125398 1 LVPLLLEDGGEAPAALEAALEEK QNVADVSVLQKHLRKLVPLLLEDGGEAPAA GGEAPAALEAALEEKSALEQMRKFLSDPQV K L V E K S 5 0 0 1 0 0 5 2 0 0 6 1 0 0 2 0 0 0 0 1 0 0 23 0 2347.2523 Q14204 Q14204 37 59 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0012872 26.13 By MS/MS 2 0.98576 0.86196 10.306 2 Median NaN NaN NaN 0 0 Median 0.98576 0.86196 10.306 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2172700 1099600 1073100 0 0 0 2172700 1099600 1073100 0 0 0 0 0 0 0 0 0 0 0 0 23545 2865 24549 124260;124261 125399;125400 125400 2 LVPLNQESVEER SGHIDRAFDIIERLKLVPLNQESVEERVAA RLKLVPLNQESVEERVAAFRNFSDEIRHNL K L V E R V 0 1 1 0 0 1 3 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 12 0 1411.7307 Q8N1F7;H3BVG0;H3BRD9;H3BV15 Q8N1F7 719 730 NUP93 Nuclear pore complex protein Nup93 yes no 2 9.9099E-07 137.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1 4 1.0613 0.91181 7.3077 11 Median 0.89544 0.85069 NaN 1 0 Median 1.1817 1.0212 NaN 1 0 Median 0.86653 0.84423 4.7329 3 1 Plateau 1.1135 0.95984 NaN 1 0 Median 0.92421 0.94939 NaN 1 1 Median 1.0909 0.90621 7.5687 4 0 Median 169970000 86727000 83240000 6687800 3543300 3144600 8940200 4288000 4652200 114350000 59299000 55047000 22640000 10651000 11989000 8273700 4623800 3649800 9079100 4322300 4756800 23546 3356 24550 124262;124263;124264;124265;124266;124267;124268;124269;124270;124271;124272 125401;125402;125403;125404;125405;125406;125407;125408;125409;125410;125411;125412;125413;125414;125415;125416;125417;125418 125403 18 LVPLQEEIYR MPSLSRKNDLIIWIRLVPLQEEIYRKFVSL IIWIRLVPLQEEIYRKFVSLDHIKELLMET R L V Y R K 0 1 0 0 0 1 2 0 0 1 2 0 0 0 1 0 0 0 1 1 0 0 10 0 1258.6921 B5MDQ0;Q2NKX8 B5MDQ0 250 259 ERCC6L DNA excision repair protein ERCC-6-like yes no 2 0.0028032 58.981 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.70844 0.75992 52.317 5 Median NaN NaN NaN 0 0 Median 0.63535 0.55736 NaN 1 0 Median 0.98244 1.0665 47.933 2 0 Median 1.7543 1.5126 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49779 0.51351 NaN 1 0 Median 7954400 3775700 4178700 0 0 0 338260 187830 150430 6937900 3315900 3622000 482460 159410 323050 0 0 0 195770 112520 83253 23547 624 24551 124273;124274;124275;124276;124277 125419;125420 125419 2 LVPLQEEIYRK MPSLSRKNDLIIWIRLVPLQEEIYRKFVSL IWIRLVPLQEEIYRKFVSLDHIKELLMETR R L V R K F 0 1 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 1 1 0 0 11 1 1386.7871 B5MDQ0;Q2NKX8 B5MDQ0 250 260 ERCC6L DNA excision repair protein ERCC-6-like yes no 3 0.016539 24.853 By MS/MS 1 0.51229 0.58314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51229 0.58314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1708300 1136900 571350 0 0 0 0 0 0 1708300 1136900 571350 0 0 0 0 0 0 0 0 0 23548 624 24552 124278 125421 125421 1 LVPLVNGVR ILHENTQTDKALYNRLVPLVNGVREFSEIQ KALYNRLVPLVNGVREFSEIQLARLKKLGI R L V V R E 0 1 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 3 0 0 9 0 965.6022 A0A087WVM4;B7ZM99;Q6UB35 A0A087WVM4 457 465 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0702 26.602 By MS/MS 1 1.1976 1.179 NaN 1 Median 1.1976 1.179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2314400 813920 1500500 2314400 813920 1500500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23549 43 24553 124279 125422;125423 125422 2 LVPQLVR EMCERSPDMLAHFRKLVPQLVRILKNLIMS DMLAHFRKLVPQLVRILKNLIMSGYSPEHD K L V V R I 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 7 0 823.52797 O43747 O43747 215 221 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.027151 52.231 By MS/MS By MS/MS 1 1 1.0947 1.0118 0.74235 2 Median 1.0241 1.0065 NaN 1 0 Median 1.1702 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4474000 2050900 2423100 2421400 1162400 1259000 2052500 888490 1164000 0 0 0 0 0 0 0 0 0 0 0 0 23550 1587 24554 124280;124281 125424;125425;125426 125426 3 LVPQQLAH KGEAQRCPRCGAHYKLVPQQLAH_______ RCGAHYKLVPQQLAH_______________ K L V A H - 1 0 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 904.51305 P10606 P10606 122 129 COX5B Cytochrome c oxidase subunit 5B, mitochondrial yes yes 2 0.0038663 88.627 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 240870000 0 0 81295000 0 0 146700000 0 0 7426400 0 0 5445600 0 0 0 0 0 0 0 0 23551 1943 24555 124282;124283;124284;124285 125427;125428;125429;125430;125431;125432 125429 6 LVPSQEETK ETKDGSGLEEKVRAKLVPSQEETKLSVEES EKVRAKLVPSQEETKLSVEESEAAGDGVDT K L V T K L 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 9 0 1029.5342 P49321 P49321 418 426 NASP Nuclear autoantigenic sperm protein yes yes 2 0.0016016 79.713 By matching By MS/MS 2 1 1.3566 1.1479 26.218 3 Median 1.0698 1.0697 36.628 2 0 Median 1.3566 1.1479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11957000 5056000 6901500 566020 292280 273740 11391000 4763700 6627700 0 0 0 0 0 0 0 0 0 0 0 0 23552 2376 24556 124286;124287;124288 125433;125434 125433 2 LVPSQEETKLSVEESEAAGDGVDTK ETKDGSGLEEKVRAKLVPSQEETKLSVEES SVEESEAAGDGVDTKVAQGATEKSPEDKVQ K L V T K V 2 0 0 2 0 1 5 2 0 0 2 2 0 0 1 3 2 0 0 3 0 0 25 1 2617.2607 P49321 P49321 418 442 NASP Nuclear autoantigenic sperm protein yes yes 3 3.9569E-19 78.717 By MS/MS By matching 2 1 0.87158 0.91874 12.37 2 Median 0.80803 0.84179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94013 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median 33759000 16819000 16940000 30282000 15386000 14895000 0 0 0 0 0 0 0 0 0 3477400 1433200 2044200 0 0 0 23553 2376 24557 124289;124290;124291 125435;125436 125436 2 LVPSVNGVR IFHELTQTDKALFNRLVPSVNGVRRFSDIQ KALFNRLVPSVNGVRRFSDIQIRRLKRLGI R L V V R R 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 3 0 0 9 0 939.55016 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 479 487 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0031926 79.116 By MS/MS By MS/MS By matching 1 2 1 1.0378 0.88304 14.473 4 Median 0.85425 0.82584 NaN 1 0 Median 1.0378 0.88304 1.9851 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3918 1.1444 NaN 1 0 Median 23220000 10780000 12440000 5912200 2802900 3109300 16821000 7804900 9015800 0 0 0 0 0 0 0 0 0 486920 172170 314750 23554 1968 24558 124292;124293;124294;124295 125437;125438;125439;125440 125438 3 LVPTAVYQHMK TLFSRKLNGKYRLERLVPTAVYQHMKMHKR RLERLVPTAVYQHMKMHKRILGHLSSVYCV R L V M K M 1 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 1 2 0 0 11 0 1285.6853 Q8WWQ0 Q8WWQ0 164 174 PHIP PH-interacting protein yes yes 3 0.0024666 39.266 By MS/MS By matching 1 1 0.66808 0.62503 58.91 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90515 0.94801 NaN 1 0 Median 0.49309 0.41209 NaN 1 0 Median 6453400 3457100 2996300 0 0 0 0 0 0 0 0 0 0 0 0 6026600 3178100 2848500 426810 279050 147760 23555 3512 24559 124296;124297 125441;125442 125441 2 LVPTGLDFGQEGFTR NEWVVDYALKKRNVRLVPTGLDFGQEGFTR LVPTGLDFGQEGFTRFRERRFHPSLRSTRR R L V T R F 0 1 0 1 0 1 1 3 0 0 2 0 0 2 1 0 2 0 0 1 0 0 15 0 1635.8257 P46087 P46087 539 553 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 7.0744E-10 143.79 By matching By MS/MS By MS/MS By matching 1 1 5 2 0.87585 0.87762 47.605 9 Median 0.22425 0.23754 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82693 0.87762 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87585 0.87639 7.2358 5 0 Median 1.3243 1.0887 23.734 2 0 Median 83488000 43313000 40175000 1321400 1103100 218280 0 0 0 11950000 6529600 5420600 0 0 0 68205000 34709000 33497000 2011400 971900 1039500 23556 2338 24560 124298;124299;124300;124301;124302;124303;124304;124305;124306 125443;125444;125445;125446;125447;125448;125449;125450;125451;125452;125453;125454;125455;125456 125451 14 LVPVGYGIK VRSIQADGLVWGSSKLVPVGYGIKKLQIQC VWGSSKLVPVGYGIKKLQIQCVVEDDKVGT K L V I K K 0 0 0 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 1 2 0 0 9 0 944.5695 P24534 P24534 177 185 EEF1B2 Elongation factor 1-beta yes yes 1;2 0.004416 60.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 6 2 4 1.1397 0.98811 12.175 22 Median 1.1385 1.0431 8.7305 4 0 Median 1.101 0.92209 1.6161 2 0 Median 1.1796 1.1071 14.018 4 0 Median 1.1441 0.94743 6.5559 6 0 Median 1.1116 1.1622 8.5927 2 0 Median 1.1347 1.0544 12.261 4 0 Linear 988490000 450510000 537980000 247080000 114570000 132510000 16795000 7675000 9120300 351450000 156630000 194820000 331720000 153130000 178590000 26587000 11961000 14626000 14864000 6549500 8314400 23557 2123 24561 124307;124308;124309;124310;124311;124312;124313;124314;124315;124316;124317;124318;124319;124320;124321;124322;124323;124324;124325;124326;124327;124328 125457;125458;125459;125460;125461;125462;125463;125464;125465;125466;125467;125468;125469;125470;125471;125472;125473;125474;125475;125476;125477;125478;125479;125480;125481;125482;125483;125484 125458 27 LVPVGYGIKK VRSIQADGLVWGSSKLVPVGYGIKKLQIQC WGSSKLVPVGYGIKKLQIQCVVEDDKVGTD K L V K K L 0 0 0 0 0 0 0 2 0 1 1 2 0 0 1 0 0 0 1 2 0 0 10 1 1072.6645 P24534 P24534 177 186 EEF1B2 Elongation factor 1-beta yes yes 2 0.0023555 63.565 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 3 2 1.1986 1.1896 14.364 9 Median 1.1862 1.178 5.3433 2 0 Median 1.4706 1.345 NaN 1 0 Median 1.1986 1.1896 NaN 1 0 Median 1.1255 1.016 9.5711 3 0 Median 1.5208 1.3281 14.769 2 0 Median NaN NaN NaN 0 0 Median 165820000 76363000 89462000 28593000 12856000 15737000 3592400 1341900 2250400 43309000 19019000 24290000 84430000 40518000 43911000 5901500 2628400 3273100 0 0 0 23558 2123 24562 124329;124330;124331;124332;124333;124334;124335;124336;124337 125485;125486;125487;125488;125489;125490;125491;125492;125493;125494 125493 10 LVPVGYGIR VRSIQLDGLVWGASKLVPVGYGIRKLQIQC VWGASKLVPVGYGIRKLQIQCVVEDDKVGT K L V I R K 0 1 0 0 0 0 0 2 0 1 1 0 0 0 1 0 0 0 1 2 0 0 9 0 972.57565 E9PRY8;A0A087X1X7;H0YE72;H0YE58;E9PQC9;P29692;E9PK01;E9PQZ1 P29692 233 241 EEF1D Elongation factor 1-delta no no 2 0.00016808 143.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 1 1.0966 0.92599 27.888 13 Median 1.0326 1.0222 19.494 3 0 Median 1.3034 1.1043 12.746 3 0 Plateau 1.1215 1.1097 2.0118 2 0 Median 1.0743 0.95429 9.9692 4 1 Linear 0.41232 0.41712 NaN 1 0 Median NaN NaN NaN 0 0 Median 1293700000 621100000 672560000 357310000 177850000 179460000 4143200 1696000 2447100 191350000 87927000 103420000 728310000 345750000 382560000 12547000 7874000 4672900 0 0 0 23559 985;2174 24563 124338;124339;124340;124341;124342;124343;124344;124345;124346;124347;124348;124349;124350 125495;125496;125497;125498;125499;125500;125501;125502;125503;125504;125505;125506;125507;125508;125509;125510;125511;125512;125513;125514;125515;125516;125517;125518;125519;125520;125521 125496 27 LVPVGYGIRK VRSIQLDGLVWGASKLVPVGYGIRKLQIQC WGASKLVPVGYGIRKLQIQCVVEDDKVGTD K L V R K L 0 1 0 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 1 2 0 0 10 1 1100.6706 E9PRY8;A0A087X1X7;H0YE72;H0YE58;E9PQC9;P29692;E9PK01;E9PQZ1 P29692 233 242 EEF1D Elongation factor 1-delta no no 2 0.0053144 55.676 By matching By MS/MS 1 1 1.1414 1.1072 12.58 2 Median 1.2138 1.2103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0734 1.013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13814000 6150900 7663500 4707100 1741200 2965900 0 0 0 0 0 0 9107300 4409700 4697600 0 0 0 0 0 0 23560 985;2174 24564 124351;124352 125522;125523 125523 2 LVPVHYDETEAER KKSVKGVSKKYVPPRLVPVHYDETEAEREK PRLVPVHYDETEAEREKKRLERAKRRALSS R L V E R E 1 1 0 1 0 0 3 0 1 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1556.7471 Q8NEJ9;H0YJ17 Q8NEJ9 176 188 NGDN Neuroguidin yes no 3 0.00014084 71.548 By MS/MS By MS/MS By MS/MS 1 2 2 0.82341 0.74841 24.41 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82341 0.81414 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68386 0.73475 33.202 2 0 Median 0.76507 0.61986 26.651 2 1 Median 21342000 12904000 8438000 0 0 0 0 0 0 3892200 2263200 1629000 0 0 0 7713500 4904700 2808800 9735900 5735700 4000200 23561 3430 24565 124353;124354;124355;124356;124357 125524;125525;125526;125527;125528 125526 5 LVPVHYDETEAEREK KKSVKGVSKKYVPPRLVPVHYDETEAEREK LVPVHYDETEAEREKKRLERAKRRALSSSV R L V E K K 1 1 0 1 0 0 4 0 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1813.8846 Q8NEJ9;H0YJ17 Q8NEJ9 176 190 NGDN Neuroguidin yes no 3 0.0070622 26.148 By MS/MS By MS/MS 1 1 0.88259 0.87284 4.6999 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83273 0.90233 NaN 1 0 Median 0.93543 0.84431 NaN 1 0 Median 6120500 3179800 2940700 0 0 0 0 0 0 0 0 0 0 0 0 4383700 2330500 2053300 1736800 849390 887400 23562 3430 24566 124358;124359 125529;125530 125529 2 LVPVLSAK ISPKLLGELLQDNAKLVPVLSAKAAQASDL LLQDNAKLVPVLSAKAAQASDLEKIHLDEK K L V A K A 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 8 0 825.53239 P37837;F2Z393 P37837 270 277 TALDO1 Transaldolase yes no 1;2 0.0026378 106.42 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 1 2 1.0406 0.90849 5.7365 14 Median 0.97459 0.89696 4.1999 5 0 Median 1.1561 0.94564 3.8436 6 0 Linear 0.8732 0.83831 NaN 1 0 Median 1.0904 0.92688 11.105 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 291960000 141600000 150350000 171350000 84750000 86602000 111510000 52291000 59219000 6292900 3172700 3120100 2801500 1390400 1411100 0 0 0 0 0 0 23563 2270 24567 124360;124361;124362;124363;124364;124365;124366;124367;124368;124369;124370;124371;124372;124373 125531;125532;125533;125534;125535;125536;125537;125538;125539;125540;125541;125542;125543 125531 12 LVQAAQMLQSDPYSVPAR DMPPAFIKVENACTKLVQAAQMLQSDPYSV AAQMLQSDPYSVPARDYLIDGSRGILSGTS K L V A R D 3 1 0 1 0 3 0 0 0 0 2 0 1 0 2 2 0 0 1 2 0 0 18 0 1973.004 P18206 P18206 88 105 VCL Vinculin yes yes 2;3 7.3521E-13 133.32 By MS/MS By MS/MS 2 1 0.70885 0.66085 4.2314 3 Median 0.69747 0.67179 2.3226 2 0 Median 0.73417 0.62791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29510000 17815000 11695000 27070000 16328000 10742000 2439400 1486800 952530 0 0 0 0 0 0 0 0 0 0 0 0 23564 2057 24568 124374;124375;124376 125544;125545;125546;125547;125548;125549 125544 6 LVQAAQMLQSDPYSVPARDYLIDGSR DMPPAFIKVENACTKLVQAAQMLQSDPYSV PYSVPARDYLIDGSRGILSGTSDLLLTFDE K L V S R G 3 2 0 3 0 3 0 1 0 1 3 0 1 0 2 3 0 0 2 2 0 0 26 1 2892.444 P18206 P18206 88 113 VCL Vinculin yes yes 3 0.011965 18.101 By MS/MS 1 0.68948 0.76603 NaN 1 Median 0.68948 0.76603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5725000 3547900 2177100 5725000 3547900 2177100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23565 2057 24569 124377 125550;125551 125551 2 LVQAFQFTDK VNDLPVGRSVDETLRLVQAFQFTDKHGEVC DETLRLVQAFQFTDKHGEVCPAGWKPGSDT R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 10 0 1195.6237 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 159 168 PRDX1 Peroxiredoxin-1 yes no 2 3.5879E-05 141.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 2 1 1.3627 1.2306 42.357 13 Median 1.4403 1.31 63.972 4 1 Median 1.2632 1.0574 10.693 4 0 Median 1.4765 1.3867 NaN 1 0 Median 1.2767 1.0602 NaN 1 0 Median 1.7229 1.7917 17.093 2 0 Median 0.8666 0.70598 NaN 1 0 Median 2147000000 897260000 1249700000 1417600000 592370000 825270000 407190000 178750000 228440000 259560000 101900000 157660000 21217000 9342700 11875000 38478000 13255000 25223000 2875500 1633900 1241600 23566 2728 24570 124378;124379;124380;124381;124382;124383;124384;124385;124386;124387;124388;124389;124390 125552;125553;125554;125555;125556;125557;125558;125559;125560;125561;125562;125563;125564;125565;125566;125567;125568;125569;125570;125571;125572;125573;125574;125575;125576 125567 25 LVQAFQYTDK LNDLPVGRSVDETLRLVQAFQYTDKHGEVC DETLRLVQAFQYTDKHGEVCPAGWKPGSET R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 10 0 1211.6186 Q13162;H7C3T4 Q13162 231 240 PRDX4 Peroxiredoxin-4 yes no 2 4.2317E-05 138.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 1 1 1 1.3411 1.1962 31.372 14 Median 1.3032 1.1702 46.495 6 1 Median 1.4398 1.1876 10.012 5 0 Median 1.2726 1.194 NaN 1 0 Median 1.5781 1.3087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7335 1.4353 NaN 1 0 Median 810170000 361490000 448690000 606450000 275730000 330720000 131750000 53057000 78691000 60547000 28136000 32412000 7468200 3086500 4381700 0 0 0 3961700 1479200 2482500 23567 2793 24571 124391;124392;124393;124394;124395;124396;124397;124398;124399;124400;124401;124402;124403;124404 125577;125578;125579;125580;125581;125582;125583;125584;125585;125586;125587;125588;125589;125590;125591;125592;125593;125594;125595;125596;125597 125590 21 LVQAIFPTPDPAALKDR HEHVTQDLRSHLVHKLVQAIFPTPDPAALK QAIFPTPDPAALKDRRMENLVAYAKKVEGD K L V D R R 3 1 0 2 0 1 0 0 0 1 2 1 0 1 3 0 1 0 0 1 0 0 17 1 1851.0254 Q92793;I3L466;I3L0Q1;Q09472 Q92793 608 624 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 3 0.0062411 25.319 By MS/MS 1 0.64551 0.77117 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64551 0.77117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3326900 1900600 1426300 0 0 0 0 0 0 3326900 1900600 1426300 0 0 0 0 0 0 0 0 0 23568 3557;2748 24572 124405 125598;125599 125598 2 LVQALLEK WEVYVCSQHSPANRKLVQALLEKHVSSLRA HSPANRKLVQALLEKHVSSLRAHETWGDSI K L V E K H 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 912.56442 Q9NU22 Q9NU22 2407 2414 MDN1 Midasin yes yes 2 0.019184 47.349 By matching By MS/MS By matching By matching 1 1 1 1 1.4051 1.3222 21.579 4 Median NaN NaN NaN 0 0 Median 1.2123 1.0569 NaN 1 0 Median 1.0487 1.1212 NaN 1 0 Median 1.6285 1.5592 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8502 1.5962 NaN 1 0 Median 16445000 7580300 8864900 0 0 0 3162300 1517800 1644500 11253000 5313400 5939500 1649400 619660 1029800 0 0 0 380440 129330 251110 23569 4112 24573 124406;124407;124408;124409 125600 125600 1 LVQAPLDADGDNVLQEK LNRESSRSHSVFNIKLVQAPLDADGDNVLQ QAPLDADGDNVLQEKEQITISQLSLVDLAG K L V E K E 2 0 1 3 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 17 0 1823.9265 A0A2U3TZL8;H7BYN4;Q02241 A0A2U3TZL8 323 339 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 2 1.5383E-07 95.401 By MS/MS By matching 1 2 0.76598 0.67674 29.811 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9637 1.053 NaN 1 0 Median 0.73853 0.63564 8.8611 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10772000 5097500 5674900 0 0 0 0 0 0 9683800 4473600 5210200 1088600 623870 464780 0 0 0 0 0 0 23570 407 24574 124410;124411;124412 125601;125602 125601 2 LVQASEELLR VRRFERKGFKLVALKLVQASEELLREHYAE LVALKLVQASEELLREHYAELRERPFYGRL K L V L R E 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1156.6452 Q13232 Q13232 57 66 NME3 Nucleoside diphosphate kinase 3 yes yes 2 2.8106E-07 133.23 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.94256 0.95619 22.872 5 Median 0.82059 0.77672 NaN 1 1 Median 1.1445 0.98874 27.006 2 0 Median 0.94256 0.95619 NaN 1 0 Median 1.5757 1.3048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70217000 34454000 35763000 50994000 26338000 24657000 10709000 4337300 6371900 6220300 2746200 3474100 2292700 1032200 1260500 0 0 0 0 0 0 23571 2798 24575 124413;124414;124415;124416;124417 125603;125604;125605;125606;125607 125603 5 LVQDTPFLTGHGR ______________________________ DRLVQDTPFLTGHGRLSEQQVDRIILQLNR R L V G R L 0 1 0 1 0 1 0 2 1 0 2 0 0 1 1 0 2 0 0 1 0 0 13 0 1439.7521 Q96LW7 Q96LW7 10 22 C9orf89 Bcl10-interacting CARD protein yes yes 3 0.00024071 62.891 By MS/MS 1 1.1399 1.1284 NaN 1 Median 1.1399 1.1284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4970100 2666100 2304000 4970100 2666100 2304000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23572 3702 24576 124418 125608 125608 1 LVQDVANNTNEEAGDGTTTATVLAR KSIDLKDKYKNIGAKLVQDVANNTNEEAGD EEAGDGTTTATVLARSIAKEGFEKISKGAN K L V A R S 4 1 3 2 0 1 2 2 0 0 2 0 0 0 0 0 5 0 0 3 0 0 25 0 2559.2413 P10809;E7ESH4;E7EXB4;C9JL25 P10809 97 121 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2;3 2.7606E-272 342.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 6 2 4 3 1.2802 1.1408 38.983 25 Median 1.0732 1.0116 12.513 10 0 Median 1.33 1.155 10.833 6 0 Median 1.2856 1.2569 23.494 2 1 Median 1.5226 1.2979 36.708 4 1 Median 3.2086 3.3325 25.59 3 3 Median NaN NaN NaN 0 0 Median 1614200000 719490000 894760000 1200700000 546100000 654650000 89225000 36376000 52849000 259380000 117730000 141650000 24815000 8732800 16082000 40080000 10559000 29521000 0 0 0 23573 1947 24577 124419;124420;124421;124422;124423;124424;124425;124426;124427;124428;124429;124430;124431;124432;124433;124434;124435;124436;124437;124438;124439;124440;124441;124442;124443 125609;125610;125611;125612;125613;125614;125615;125616;125617;125618;125619;125620;125621;125622;125623;125624;125625;125626;125627;125628;125629;125630;125631;125632;125633;125634;125635;125636;125637;125638;125639;125640;125641;125642;125643 125616 35 LVQDYGLESEVAQHLAATYGDK FLQGGKDWSPTLYIRLVQDYGLESEVAQHL ESEVAQHLAATYGDKAFEVAKMASVTGKRW R L V D K A 3 0 0 2 0 2 2 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 22 0 2406.1703 P43304 P43304 483 504 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 3 0.038586 11.143 By MS/MS By matching By matching 2 1 1 1.0027 0.95418 33.218 4 Median 1.0027 0.95418 9.6048 2 0 Median 0.63517 0.56371 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4038 1.2278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10174000 4761800 5412000 8056900 3528200 4528600 1650200 1015300 634940 0 0 0 466700 218300 248400 0 0 0 0 0 0 23574 2325 24578 124444;124445;124446;124447 125644 125644 1 LVQEALEAVPR FTRAILMALRLNESKLVQEALEAVPRGEIE NESKLVQEALEAVPRGEIEVVTSSLPELYV K L V P R G 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1223.6874 Q15269;A0A0B4J2E5 Q15269 774 784 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.0001134 142.43 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 2 1 1.0788 1.0891 25.432 11 Median 0.54766 0.54461 NaN 1 0 Median 1.067 0.90324 NaN 1 0 Median 1.0415 1.0931 17.665 3 0 Median 1.2243 1.0428 11.618 3 0 Median 1.1173 1.1775 11.039 2 0 Median 1.6529 1.3643 NaN 1 0 Median 49631000 24210000 25421000 1741800 1167900 573840 4176300 2070500 2105800 35062000 17123000 17939000 3091300 1499500 1591800 5226700 2262600 2964000 332650 85714 246930 23575 223 24579 124448;124449;124450;124451;124452;124453;124454;124455;124456;124457;124458 125645;125646;125647;125648;125649;125650;125651;125652;125653;125654 125645 9 LVQGSILK ______________________________ ______________________________ R L V L K K 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 856.5382 P12004 P12004 6 13 PCNA Proliferating cell nuclear antigen yes yes 1;2 0.0029873 102.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1 1.1479 1.0603 10.032 10 Median 1.1393 1.0396 4.2715 2 0 Median 1.2534 1.0492 6.5025 3 0 Median 1.0246 0.98007 21.005 2 0 Median 1.2995 1.0847 NaN 1 0 Median 1.1163 1.1474 NaN 1 0 Median 1.1084 0.90387 NaN 1 0 Median 156340000 70638000 85698000 50164000 21964000 28200000 42512000 19402000 23109000 29385000 13074000 16311000 26857000 12510000 14348000 3329600 1483700 1845900 4088700 2204800 1883900 23576 1974 24580 124459;124460;124461;124462;124463;124464;124465;124466;124467;124468 125655;125656;125657;125658;125659;125660;125661;125662;125663 125655 8 LVQGSILKK ______________________________ ______________________________ R L V K K V 0 0 0 0 0 1 0 1 0 1 2 2 0 0 0 1 0 0 0 1 0 0 9 1 984.63317 P12004 P12004 6 14 PCNA Proliferating cell nuclear antigen yes yes 2 0.0016528 84.568 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 3 1 1.2139 1.0834 14.519 14 Median 1.0857 1.0525 19.647 3 0 Median 1.3508 1.3467 14.893 4 0 Linear 1.2144 1.25 4.8861 2 0 Median 1.3259 1.1643 NaN 1 0 Median 1.0731 1.1009 10.131 3 0 Median 1.2142 1.0362 NaN 1 0 Median 69553000 30993000 38560000 22426000 10340000 12086000 16338000 6798000 9539800 6199600 3087300 3112300 18420000 7925100 10495000 5232700 2519700 2712900 936560 322970 613600 23577 1974 24581 124469;124470;124471;124472;124473;124474;124475;124476;124477;124478;124479;124480;124481;124482 125664;125665;125666;125667;125668;125669;125670;125671;125672;125673;125674;125675;125676;125677 125664 14 LVQIHVDTMK SSLGERKKLLSYIQRLVQIHVDTMKVINDP SYIQRLVQIHVDTMKVINDPIHGHIELHPL R L V M K V 0 0 0 1 0 1 0 0 1 1 1 1 1 0 0 0 1 0 0 2 0 0 10 0 1182.6431 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y6J9;A0A2R8Y586;A0A2R8YG48;A0A2R8Y7R5;A0A2R8Y755 Q9Y3Z3 107 116 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.00040727 96.948 By matching By MS/MS By matching 1 2 1 1.4469 1.318 42.134 4 Median 0.95757 0.91162 NaN 1 0 Median 1.4469 1.318 30.918 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4636 2.2998 NaN 1 0 Median 19958000 9003300 10954000 6765100 3397700 3367400 12213000 5336500 6877000 0 0 0 0 0 0 0 0 0 979030 269080 709950 23578 4436 24582 124483;124484;124485;124486 125678;125679 125679 2 LVQITQFFR FLAGDERSYQAVADRLVQITQFFRFDGWLI QAVADRLVQITQFFRFDGWLINIENSLSLA R L V F R F 0 1 0 0 0 2 0 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 9 0 1150.6499 Q8NFI3;F8W925 Q8NFI3 220 228 ENGASE Cytosolic endo-beta-N-acetylglucosaminidase yes no 2 0.04318 32.841 By MS/MS By matching 1 1 1.3606 1.2877 0.29483 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2196 1.285 NaN 1 0 Median 1.5179 1.2904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1939800 815640 1124100 0 0 0 0 0 0 1472200 624810 847390 467580 190830 276750 0 0 0 0 0 0 23579 3438 24583 124487;124488 125680 125680 1 LVQLGQAEK QCNTRLTRVLEEEQKLVQLGQAEKRKTDQF LEEEQKLVQLGQAEKRKTDQFLRDAVETRL K L V E K R 1 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 984.5604 O75208;H3BPY0;H3BNT2 O75208 167 175 COQ9 Ubiquinone biosynthesis protein COQ9, mitochondrial yes no 2 0.0027865 69.598 By MS/MS By MS/MS 1 1 1.0066 0.91128 28.918 2 Median 0.76574 0.74275 NaN 1 0 Median 1.3233 1.118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4703200 2177700 2525400 3185000 1607700 1577300 1518200 570080 948110 0 0 0 0 0 0 0 0 0 0 0 0 23580 1655 24584 124489;124490 125681;125682;125683 125681 3 LVQLILHEYK ISFNSTVTLTQCSEKLVQLILHEYKIFNAE QCSEKLVQLILHEYKIFNAEVLFREDCSPD K L V Y K I 0 0 0 0 0 1 1 0 1 1 3 1 0 0 0 0 0 0 1 1 0 0 10 0 1254.7336 P55039;A8MZF9;J3KRL5 P55039 202 211 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.00037009 81.594 By MS/MS By matching 1 1 1.2628 1.1265 14.486 2 Median 1.3406 1.2481 NaN 1 0 Median 1.1895 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15114000 6909100 8205100 9201900 4241600 4960300 5912400 2667500 3244900 0 0 0 0 0 0 0 0 0 0 0 0 23581 2492 24585 124491;124492 125684 125684 1 LVQLLGGVAEK VGGKRLREELLKQTKLVQLLGGVAEKVRQA KQTKLVQLLGGVAEKVRQASGSARQVVLQR K L V E K V 1 0 0 0 0 1 1 2 0 0 3 1 0 0 0 0 0 0 0 2 0 0 11 0 1125.6758 O00443 O00443 1052 1062 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.0092274 39.022 By MS/MS By MS/MS 1 1 1.0099 1.0046 4.4154 2 Median NaN NaN NaN 0 0 Median 1.0965 0.97375 NaN 1 0 Median 0.93015 1.0365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6899500 3365900 3533500 0 0 0 2796100 1353200 1442800 4103400 2012700 2090700 0 0 0 0 0 0 0 0 0 23582 1465 24586 124493;124494 125685;125686 125686 2 LVQLLVK PANHAPLQEAAVIPRLVQLLVKAHQDAQRH QEAAVIPRLVQLLVKAHQDAQRHVAAGTQQ R L V V K A 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 7 0 811.55312 P14923 P14923 527 533 JUP Junction plakoglobin yes yes 2 0.0072812 89.903 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 4 3 0.94451 0.82603 49.526 10 Median 0.93848 0.90266 NaN 1 0 Median 1.3052 1.1683 NaN 1 0 Median 1.0167 1.0554 NaN 1 0 Median 0.97299 0.84565 NaN 1 0 Median 0.74763 0.76604 27.434 3 0 Plateau 0.95057 0.80687 80.225 3 0 Median 29979000 17150000 12829000 3498200 1775700 1722500 1077500 505490 572010 6553400 3121200 3432200 2180600 1535600 644940 14853000 9336400 5516700 1816000 875680 940350 23583 2013 24587 124495;124496;124497;124498;124499;124500;124501;124502;124503;124504;124505;124506 125687;125688;125689;125690;125691;125692;125693 125689 7 LVQLLVR PANHAPLREQGAIPRLVQLLVRAHQDTQRR REQGAIPRLVQLLVRAHQDTQRRTSMGGTQ R L V V R A 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 2 0 0 7 0 839.55927 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0;A0A2R8Y6G0;A0A2R8Y815 A0A2R8Y804 536 542 CTNNB1 Catenin beta-1 yes no 2 0.016156 69.432 By MS/MS By matching By matching By matching 1 2 1 1 0.99151 0.95859 20.103 5 Median 0.99151 0.95859 NaN 1 0 Median 1.398 1.2312 8.1007 2 0 Median 0.77536 0.83107 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78283 0.83489 NaN 1 0 Median NaN NaN NaN 0 0 Median 10157000 5171300 4985400 3756800 1853900 1902900 2233100 904320 1328800 2626900 1442400 1184500 0 0 0 1539900 970690 569160 0 0 0 23584 368 24588 124507;124508;124509;124510;124511 125694 125694 1 LVQNGTEPSSLPFLDPNARPLVPEVSIK ELTKKLREQGSLLGKLVQNGTEPSSLPFLD LDPNARPLVPEVSIKTPRVFNTGGAPRILA K L V I K T 1 1 2 1 0 1 2 1 0 1 4 1 0 1 5 3 1 0 0 3 0 0 28 1 3016.6233 F8VPD4;P27708 F8VPD4 138 165 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.015185 16.4 By MS/MS By matching 2 1 0.48887 0.49399 27.795 3 Plateau 0.46268 0.46976 7.113 2 0 Median 0.30615 0.29258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7725800 4985900 2740000 6155500 3841600 2313900 1570400 1144300 426090 0 0 0 0 0 0 0 0 0 0 0 0 23585 1057 24589 124512;124513;124514 125695;125696 125696 2 LVQNIIQTAVDQFVR EPENGILELETKSSKLVQNIIQTAVDQFVR LVQNIIQTAVDQFVRTEETATEMLTSELQT K L V V R T 1 1 1 1 0 3 0 0 0 2 1 0 0 1 0 0 1 0 0 3 0 0 15 0 1742.9679 Q02952 Q02952 1549 1563 AKAP12 A-kinase anchor protein 12 yes yes 2 2.3613E-09 101.93 By MS/MS By MS/MS 3 3 1.2049 1.0608 19.584 6 Median 1.4038 1.4094 27.913 3 0 Plateau 1.1586 1.0307 6.3422 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8389100 3645900 4743200 5925400 2470800 3454600 2463600 1175100 1288500 0 0 0 0 0 0 0 0 0 0 0 0 23586 2705 24590 124515;124516;124517;124518;124519;124520 125697;125698;125699;125700;125701;125702 125701 6 LVQQAFQR PAEKKASRLSEEEQRLVQQAFQRNFFSMAR LSEEEQRLVQQAFQRNFFSMARQLPMKIRI R L V Q R N 1 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 988.54541 Q8IVW6 Q8IVW6 448 455 ARID3B AT-rich interactive domain-containing protein 3B yes yes 2 0.001333 145.87 By MS/MS By MS/MS 3 2 1.6865 1.4187 28.112 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2091 1.2631 37.742 3 0 Median 1.9543 1.6011 17.108 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7241500 3050300 4191300 0 0 0 0 0 0 6359400 2679200 3680200 882100 371040 511060 0 0 0 0 0 0 23587 3320 24591 124521;124522;124523;124524;124525 125703;125704 125703 2 LVQQGLLTPDMLK EPPSPDAGELSLASRLVQQGLLTPDMLKQL SRLVQQGLLTPDMLKQLEKEWMTQQTEHNK R L V L K Q 0 0 0 1 0 2 0 1 0 0 4 1 1 0 1 0 1 0 0 1 0 0 13 0 1454.8167 Q8IYB8 Q8IYB8 737 749 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.0040594 42.001 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0803 1.0572 15.988 5 Median 0.86224 0.81145 NaN 1 0 Median 1.1738 1.0572 NaN 1 0 Median 0.93891 0.9542 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0803 1.1094 NaN 1 0 Median 1.4432 1.237 NaN 1 0 Median 17400000 8762500 8637100 4967000 2577500 2389500 880720 378390 502330 10613000 5350800 5262600 0 0 0 727680 359290 368400 210790 96478 114310 23588 3342 24592 124526;124527;124528;124529;124530 125705;125706 125706 2 LVQRPVIHPLSSPSNR AAENLGITNGFVKPKLVQRPVIHPLSSPSN VQRPVIHPLSSPSNRFCVTSLDPDTLPAVA K L V N R F 0 2 1 0 0 1 0 0 1 1 2 0 0 0 3 3 0 0 0 2 0 0 16 1 1799.0166 A6NHX0 A6NHX0 170 185 GATSL2 GATS-like protein 2 yes yes 3;4 4.0682E-05 59.862 By MS/MS 2 0.61995 0.66741 10.612 2 Median 0.61995 0.66741 10.612 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4896700 2991000 1905700 4896700 2991000 1905700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23589 519 24593 124531;124532 125707;125708;125709 125708 3 LVQSPNSYFMDVK HPSPEEEKRKHKKKRLVQSPNSYFMDVKCP KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ R L V V K C 0 0 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 13 0 1526.7439 P42677;H0YMV8;Q71UM5;C9JLI6 P42677 24 36 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 6.7811E-07 151.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 2 3 3 1.1201 0.96806 22.642 19 Median 0.92505 0.8342 13.192 4 0 Median 1.0483 0.8594 8.4321 5 0 Median 1.0463 0.99013 0.49502 2 0 Median 1.2508 0.9752 9.4843 2 0 Median 1.21 1.312 2.9401 3 0 Median 1.1769 0.96806 43.085 3 0 Median 630410000 308540000 321880000 330500000 168270000 162230000 108510000 51473000 57035000 99978000 48912000 51067000 1448700 635250 813430 51911000 23162000 28749000 38066000 16080000 21986000 23590 2312;1200 24594;24595 124533;124534;124535;124536;124537;124538;124539;124540;124541;124542;124543;124544;124545;124546;124547;124548;124549;124550;124551 125710;125711;125712;125713;125714;125715;125716;125717;125718;125719;125720;125721;125722;125723;125724;125725;125726;125727;125728;125729;125730;125731;125732;125733;125734;125735;125736 125719 403 27 LVQSTLSDLR YAAYQQLQRETIPAKLVQSTLSDLRVYLGA TIPAKLVQSTLSDLRVYLGASTPDLQ____ K L V L R V 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 10 0 1130.6295 Q9BYN0 Q9BYN0 117 126 SRXN1 Sulfiredoxin-1 yes yes 2 5.1551E-05 135.79 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0982 0.90097 37.205 4 Median 1.5357 1.4908 NaN 1 0 Median 1.1543 0.98397 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0448 0.82498 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.56348 0.61202 NaN 1 0 Median 43811000 18905000 24905000 17010000 6709600 10301000 25616000 11557000 14059000 0 0 0 731430 361440 369990 0 0 0 453310 277670 175650 23591 3893 24596 124552;124553;124554;124555 125737;125738;125739;125740 125738 4 LVQSVHQSLAALSK PILSFIILEQFNAIRLVQSVHQSLAALSKV RLVQSVHQSLAALSKVIRGTTLLSSEVQKL R L V S K V 2 0 0 0 0 2 0 0 1 0 3 1 0 0 0 3 0 0 0 2 0 0 14 0 1479.8409 Q8NCM8 Q8NCM8 4086 4099 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.032673 33.759 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23592 3418 24597 124556 125741 125741 1 LVQTAAQQVAEDK ______________________________ GRLVQTAAQQVAEDKFVFDLPDYESINHVV R L V D K F 3 0 0 1 0 3 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1399.7307 Q53FT3;E9PPG8;E9PJB2 Q53FT3 10 22 C11orf73 Protein Hikeshi yes no 2 1.0211E-06 153.12 By MS/MS By MS/MS 2 2 1.0377 0.93379 20.845 4 Median 0.89505 0.84058 9.5697 2 0 Median 1.2575 1.1172 20.063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30901000 14400000 16501000 21698000 10598000 11100000 9203100 3802200 5400900 0 0 0 0 0 0 0 0 0 0 0 0 23593 3028 24598 124557;124558;124559;124560 125742;125743;125744;125745;125746;125747 125743 6 LVQTAELTK CKPEQQMMYAGSKNKLVQTAELTKVFEIRN AGSKNKLVQTAELTKVFEIRNTEDLTEEWL K L V T K V 1 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 1001.5757 P60983;G3V4P8;M0QYG8;M0R1D2;M0R0C1;M0QYJ8;O60234 P60983 111 119 GMFB;GMFG Glia maturation factor beta;Glia maturation factor gamma yes no 2 0.0040895 78.516 By MS/MS By MS/MS 1 2 0.42 0.39555 175.83 3 Median 0.42 0.39555 NaN 1 1 Median 0.18181 0.15239 236.16 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128100000 118450000 9643800 22463000 17541000 4922500 105630000 100910000 4721300 0 0 0 0 0 0 0 0 0 0 0 0 23594 2534 24599 124561;124562;124563 125748;125749;125750 125750 3 LVQTPLTDR AKFNYGFEYLGVQDKLVQTPLTDRCYLTMT LGVQDKLVQTPLTDRCYLTMTQALEARLGG K L V D R C 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1041.5819 Q14204 Q14204 1879 1887 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00028393 138.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 0.90957 0.82523 3.7448 7 Median 0.82114 0.80823 3.3369 2 0 Median 0.9958 0.79518 NaN 1 0 Median 0.82038 0.85981 NaN 1 0 Median 0.94451 0.82697 5.9358 2 0 Median NaN NaN NaN 0 0 Median 0.99466 0.82523 NaN 1 0 Median 112730000 59799000 52934000 19707000 10090000 9617700 52188000 26958000 25230000 26280000 15149000 11131000 10165000 5238600 4926500 0 0 0 4393200 2364900 2028300 23595 2865 24600 124564;124565;124566;124567;124568;124569;124570 125751;125752;125753;125754;125755;125756;125757;125758;125759;125760;125761 125754 10 LVREIAQDFK QKSTELLIRKLPFQRLVREIAQDFKTDLRF LPFQRLVREIAQDFKTDLRFQSAAIGALQE R L V F K T 1 1 0 1 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1217.6768 K7EK07;Q71DI3;P84243;P68431;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 71 80 H3F3B;HIST2H3A;H3F3A;HIST1H3A Histone H3;Histone H3.2;Histone H3.3;Histone H3.1 yes no 2;3 0.00051063 101.65 By MS/MS By MS/MS 2 1 0.95275 1.0751 5.4187 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93887 1.0598 2.0186 2 0 Median 1.4508 1.1603 NaN 1 0 Median 20696000 10673000 10024000 0 0 0 0 0 0 0 0 0 0 0 0 19301000 10096000 9204700 1395700 576580 819160 23596 1366 24601 124571;124572;124573 125762;125763;125764;125765;125766 125765 5 LVREIAQDFKTDLR QKSTELLIRKLPFQRLVREIAQDFKTDLRF RLVREIAQDFKTDLRFQSAAIGALQEASEA R L V L R F 1 2 0 2 0 1 1 0 0 1 2 1 0 1 0 0 1 0 0 1 0 0 14 2 1702.9366 K7EK07;Q71DI3;P84243;P68431;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00 K7EK07 71 84 H3F3B;HIST2H3A;H3F3A;HIST1H3A Histone H3;Histone H3.2;Histone H3.3;Histone H3.1 yes no 3;4 7.4567E-09 107.35 By MS/MS 2 0.97682 1.1713 4.4903 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97682 1.1713 4.4903 2 0 Median NaN NaN NaN 0 0 Median 31585000 15476000 16109000 0 0 0 0 0 0 0 0 0 0 0 0 31585000 15476000 16109000 0 0 0 23597 1366 24602 124574;124575 125767;125768;125769;125770 125769 4 LVREIAQEFKTDLR QKSTELLIRKLPFQRLVREIAQEFKTDLRF RLVREIAQEFKTDLRFQSSAVMALQEAREA R L V L R F 1 2 0 1 0 1 2 0 0 1 2 1 0 1 0 0 1 0 0 1 0 0 14 2 1716.9523 Q5TEC6;A0A590UJL8 Q5TEC6 71 84 HIST2H3PS2 Histone H3 yes no 3 0.019425 23.419 By MS/MS 1 0.8277 0.99252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8277 0.99252 NaN 1 0 Median NaN NaN NaN 0 0 Median 7625400 3904600 3720900 0 0 0 0 0 0 0 0 0 0 0 0 7625400 3904600 3720900 0 0 0 23598 3104 24603 124576 125771 125771 1 LVRPPVQVYGIEGR QVRCFSTSVVRPFAKLVRPPVQVYGIEGRY KLVRPPVQVYGIEGRYATALYSAASKQNKL K L V G R Y 0 2 0 0 0 1 1 2 0 1 1 0 0 0 2 0 0 0 1 3 0 0 14 1 1581.8991 P48047;A0A494C0K9;H7C0C1;H7C086 P48047 27 40 ATP5O ATP synthase subunit O, mitochondrial yes no 2;3 3.5532E-10 169.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 2 1 1.0191 0.88583 19.919 11 Median 0.77355 0.82687 1.1137 2 0 Median 1.1041 0.97316 7.6094 4 0 Median 0.76009 0.78809 0.22601 2 0 Median 1.3195 1.1815 40.728 2 0 Median NaN NaN NaN 0 0 Median 1.1816 1.0526 NaN 1 0 Median 543240000 295690000 247550000 468520000 255790000 212720000 42789000 21244000 21546000 29672000 17651000 12021000 1462300 657940 804340 0 0 0 799220 346910 452310 23599 2358 24604 124577;124578;124579;124580;124581;124582;124583;124584;124585;124586;124587 125772;125773;125774;125775;125776;125777;125778;125779;125780;125781;125782 125776 11 LVRPVQNLALGK PSLYPGLFLFTTPCRLVRPVQNLALGKEEL PCRLVRPVQNLALGKEELIGTMEQIFMNVA R L V G K E 1 1 1 0 0 1 0 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 12 1 1306.8085 Q9H9Y6;H7C0D9 Q9H9Y6 619 630 POLR1B DNA-directed RNA polymerase I subunit RPA2;DNA-directed RNA polymerase yes no 3 0.012526 43.544 By MS/MS 1 0.97956 1.1098 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97956 1.1098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7286500 3493300 3793100 0 0 0 0 0 0 7286500 3493300 3793100 0 0 0 0 0 0 0 0 0 23600 4004 24605 124588 125783 125783 1 LVSAVVEYGGK MMDLRNKGVSEKYRKLVSAVVEYGGKRVRG KYRKLVSAVVEYGGKRVRGSDLFSPKDAVA K L V G K R 1 0 0 0 0 0 1 2 0 0 1 1 0 0 0 1 0 0 1 3 0 0 11 0 1120.6128 A0A087WU65;A0A2R8YE10;Q9NRW7;A0A2R8YD95;A0A2R8YF01;A0A1B0GXI6 A0A087WU65 299 309 VPS45 Vacuolar protein sorting-associated protein 45 yes no 2 0.023381 54.416 By MS/MS By MS/MS 1 1 0.72555 0.68881 NaN 1 Median 0.72555 0.68881 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7567900 4101100 3466800 7567900 4101100 3466800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23601 27 24606 124589;124590 125784;125785 125785 2 LVSDANEQYK LLELVPWRAREGLDKLVSDANEQYKLVSDT EGLDKLVSDANEQYKLVSDTIGQRVDEIDA K L V Y K L 1 0 1 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1165.5615 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5748 5757 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.013049 56.729 By MS/MS 1 1.5902 1.391 NaN 1 Median NaN NaN NaN 0 0 Median 1.5902 1.391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2181300 1036200 1145100 0 0 0 2181300 1036200 1145100 0 0 0 0 0 0 0 0 0 0 0 0 23602 1220 24607 124591 125786 125786 1 LVSDGNINSDR ANEEKINAVVETGRRLVSDGNINSDRIQEK TGRRLVSDGNINSDRIQEKVDSIDDRHRKN R L V D R I 0 1 2 2 0 0 0 1 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1188.5735 Q01082;A0A087WUZ3 Q01082 1235 1245 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00012637 119.68 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.1686 1.0349 12.993 8 Median 0.88543 0.88301 NaN 1 0 Median 1.2797 1.071 8.2561 2 0 Median 0.89156 0.9764 NaN 1 0 Median 1.2258 1.0703 24.698 2 0 Median 1.1244 1.1802 NaN 1 0 Median 1.2712 1.0602 NaN 1 0 Median 24185000 11917000 12268000 620230 368570 251650 8646000 4013200 4632800 8151600 4546900 3604800 2847800 1376500 1471300 2458300 969380 1488900 1461000 642210 818800 23603 2681 24608 124592;124593;124594;124595;124596;124597;124598;124599 125787;125788;125789;125790;125791;125792;125793;125794;125795;125796;125797 125791 11 LVSDGNINSDRIQEK ANEEKINAVVETGRRLVSDGNINSDRIQEK LVSDGNINSDRIQEKVDSIDDRHRKNRETA R L V E K V 0 1 2 2 0 1 1 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 15 1 1686.8537 Q01082;A0A087WUZ3 Q01082 1235 1249 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.5256E-05 82.171 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 0.96387 1.0375 13.08 8 Median 1.2658 1.2856 1.8405 2 0 Median 1.2699 1.1847 NaN 1 0 Median 0.84793 1.0159 1.9554 2 0 Median NaN NaN NaN 0 0 Median 0.89991 1.02 3.407 2 0 Median 1.0094 0.89669 NaN 1 0 Median 89259000 46111000 43149000 8062600 3686000 4376600 4473400 1466200 3007200 55213000 29243000 25970000 0 0 0 14568000 8151000 6417300 6942500 3564600 3377900 23604 2681 24609 124600;124601;124602;124603;124604;124605;124606;124607 125798;125799;125800;125801;125802;125803;125804;125805;125806;125807 125807 9 LVSDGQALPEMEIHLQTNAEK LISNASDALEKLRHKLVSDGQALPEMEIHL ALPEMEIHLQTNAEKGTITIQDTGIGMTQE K L V E K G 2 0 1 1 0 2 3 1 1 1 3 1 1 0 1 1 1 0 0 1 0 0 21 0 2322.1526 Q12931 Q12931 131 151 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 3 4.3997E-09 56.54 By MS/MS By matching By matching 4 2 1 0.87287 0.83149 13.087 7 Median 0.85172 0.7849 4.546 4 0 Median 1.1998 1.0202 6.7328 2 0 Median 0.83783 0.89154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76295000 39526000 36769000 58615000 30746000 27869000 14552000 6988000 7563700 3127900 1791300 1336600 0 0 0 0 0 0 0 0 0 23605 2771 24610;24611 124608;124609;124610;124611;124612;124613;124614 125808;125809;125810;125811;125812;125813;125814 125811 1493 7 LVSDIIDPVALEIPLSK VNGIENKSLSPDEERLVSDIIDPVALEIPL SDIIDPVALEIPLSKNLLAQISALALQLDS R L V S K N 1 0 0 2 0 0 1 0 0 3 3 1 0 0 2 2 0 0 0 2 0 0 17 0 1821.0499 Q5UIP0;H7C2B5 Q5UIP0 2399 2415 RIF1 Telomere-associated protein RIF1 yes no 2 0.0052773 29.936 By MS/MS By matching By matching 2 1 1 0.67906 0.67051 23.397 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54145 0.58743 38.24 2 0 Median 0.79231 0.6812 NaN 1 0 Median 0.66718 0.65999 NaN 1 0 Median NaN NaN NaN 0 0 Median 5882700 3277400 2605300 0 0 0 0 0 0 5339200 2953900 2385300 262530 143150 119380 281030 180370 100670 0 0 0 23606 3109 24612 124615;124616;124617;124618 125815;125816 125815 2 LVSDSLSEHEK QAVQKIVSITERALKLVSDSLSEHEKNKNK RALKLVSDSLSEHEKNKNKEGDDKKEGGKD K L V E K N 0 0 0 1 0 0 2 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1242.6092 Q96KR1;H0Y8W1 Q96KR1 757 767 ZFR Zinc finger RNA-binding protein yes no 2;3 0.0006377 81.338 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 4 1 1.0614 0.95855 15.619 13 Median NaN NaN NaN 0 0 Median 1.0658 0.92555 5.4683 3 2 Median 0.94995 1.0204 15.642 4 1 Median 0.99494 0.83562 NaN 1 0 Median 1.0512 1.0863 19.199 4 0 Median 1.13 0.94034 NaN 1 0 Median 32515000 16259000 16256000 0 0 0 9656000 5157200 4498800 9911700 5221600 4690100 729370 377100 352270 11307000 5105200 6202300 910370 397520 512850 23607 3697 24613 124619;124620;124621;124622;124623;124624;124625;124626;124627;124628;124629;124630;124631;124632 125817;125818;125819;125820;125821;125822;125823;125824;125825;125826;125827;125828;125829;125830;125831 125818 15 LVSDTIGQR EGLDKLVSDANEQYKLVSDTIGQRVDEIDA ANEQYKLVSDTIGQRVDEIDAAIQRSQQYE K L V Q R V 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 987.53491 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5758 5766 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0078737 62.546 By MS/MS By MS/MS 1 1 1.0493 0.95949 26.326 2 Median 0.79057 0.79652 NaN 1 0 Median 1.3927 1.1558 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8473700 4098200 4375500 1593500 919670 673780 6880200 3178600 3701700 0 0 0 0 0 0 0 0 0 0 0 0 23608 1220 24614 124633;124634 125832;125833;125834 125832 3 LVSEFPYIEAEVK MASVTGKRWPIVGVRLVSEFPYIEAEVKYG VRLVSEFPYIEAEVKYGIKEYACTAVDMIS R L V V K Y 1 0 0 0 0 0 3 0 0 1 1 1 0 1 1 1 0 0 1 2 0 0 13 0 1522.7919 P43304 P43304 526 538 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.018121 47.261 By MS/MS 1 1.2844 1.1041 NaN 1 Median NaN NaN NaN 0 0 Median 1.2844 1.1041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3217500 1280800 1936700 0 0 0 3217500 1280800 1936700 0 0 0 0 0 0 0 0 0 0 0 0 23609 2325 24615 124635 125835 125835 1 LVSELWDAGIK LVASAQKKLLEERLKLVSELWDAGIKAELL ERLKLVSELWDAGIKAELLYKKNPKLLNQL K L V I K A 1 0 0 1 0 0 1 1 0 1 2 1 0 0 0 1 0 1 0 1 0 0 11 0 1229.6656 P12081;B3KWE1;B4DDD8;B4E1C5 P12081 427 437 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0004849 68.735 By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 1.068 0.98818 12.228 7 Median 1.2242 1.1443 NaN 1 0 Median 1.0634 0.90932 11.761 2 0 Median 0.95601 0.92485 15.846 2 0 Median 1.1316 0.96116 10.62 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49886000 22806000 27080000 8081000 3522400 4558600 634220 308990 325230 33398000 15472000 17926000 7772700 3502600 4270100 0 0 0 0 0 0 23610 1975 24616 124636;124637;124638;124639;124640;124641;124642 125836;125837;125838;125839;125840;125841;125842;125843 125837 8 LVSESSDVLPK SRAVVVKKIETRDGKLVSESSDVLPK____ RDGKLVSESSDVLPK_______________ K L V P K - 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 3 0 0 0 2 0 0 11 0 1172.6289 P05787;CON__P05787 P05787 473 483 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00011336 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 6 6 7 8 1.1122 0.97755 34.178 34 Median 1.3809 1.3064 37.869 3 0 Median 1.2125 1.0276 80.546 4 0 Median 1.0861 1.1091 19.219 6 0 Median 1.1485 0.95114 9.0796 6 1 Median 1.1739 1.1941 6.701 7 0 Median 0.96927 0.79125 4.7706 8 0 Median 1401900000 676550000 725370000 132630000 66045000 66581000 113230000 52020000 61211000 340270000 167340000 172930000 217060000 106800000 110250000 364580000 166160000 198420000 234150000 118190000 115970000 + 23611 750 24617 124643;124644;124645;124646;124647;124648;124649;124650;124651;124652;124653;124654;124655;124656;124657;124658;124659;124660;124661;124662;124663;124664;124665;124666;124667;124668;124669;124670;124671;124672;124673;124674;124675;124676 125844;125845;125846;125847;125848;125849;125850;125851;125852;125853;125854;125855;125856;125857;125858;125859;125860;125861;125862;125863;125864;125865;125866;125867;125868;125869;125870;125871;125872;125873;125874;125875;125876;125877;125878;125879;125880;125881;125882;125883;125884;125885;125886;125887;125888;125889;125890;125891;125892;125893;125894;125895;125896;125897;125898;125899;125900;125901;125902;125903;125904;125905;125906;125907;125908;125909;125910;125911;125912;125913;125914;125915;125916;125917;125918;125919;125920;125921;125922;125923;125924;125925;125926;125927;125928;125929;125930;125931;125932;125933;125934 125901 91 LVSEYMSK GTAFGGWKSVESVPKLVSEYMSKKIKVDEF SVESVPKLVSEYMSKKIKVDEFVTHNLSFD K L V S K K 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 1 1 0 0 8 0 955.46847 P11766 P11766 331 338 ADH5 Alcohol dehydrogenase class-3 yes yes 2 0.0035928 89.046 By MS/MS By MS/MS 3 2 1.3286 1.2213 10.135 5 Median 1.3256 1.2213 12.777 3 0 Median 1.4532 1.2558 8.6778 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46989000 19887000 27101000 20666000 9160000 11506000 26322000 10727000 15595000 0 0 0 0 0 0 0 0 0 0 0 0 23612 1970 24618 124677;124678;124679;124680;124681 125935;125936;125937;125938;125939;125940 125939 6 LVSGMQHPGSAGGVYETTQHFIDIK RQVNEMKNSMSETVRLVSGMQHPGSAGGVY AGGVYETTQHFIDIKEHLHIVKRDIDNLVQ R L V I K E 1 0 0 1 0 2 1 4 2 2 1 1 1 1 1 2 2 0 1 2 0 0 25 0 2671.3064 P49257 P49257 416 440 LMAN1 Protein ERGIC-53 yes yes 3;4 0.019397 14.064 By MS/MS By matching 2 1 0.76787 0.72729 8.4429 3 Median 0.75749 0.7129 2.8262 2 0 Median 0.96187 0.82174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15245000 9306800 5937900 12224000 7603700 4620300 3020700 1703200 1317600 0 0 0 0 0 0 0 0 0 0 0 0 23613 2375 24619 124682;124683;124684 125941;125942;125943 125943 3 LVSGWVKPIIIGR GTVFREAIICKNIPRLVSGWVKPIIIGRHA PRLVSGWVKPIIIGRHAYGDQYRATDFVVP R L V G R H 0 1 0 0 0 0 0 2 0 3 1 1 0 0 1 1 0 1 0 2 0 0 13 1 1436.8868 O75874;C9J4N6 O75874 120 132 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes no 2;3 0.0030397 68.657 By MS/MS By matching 3 2 0.87044 0.85109 13.809 5 Median 0.87044 0.87074 11.663 3 0 Median 0.81193 0.74982 17.916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18489000 9579600 8909300 16990000 8832700 8157500 1498700 746910 751800 0 0 0 0 0 0 0 0 0 0 0 0 23614 1701 24620 124685;124686;124687;124688;124689 125944;125945;125946;125947 125945 4 LVSIGAEEIVDGNAK NVNKALDFIASKGVKLVSIGAEEIVDGNAK LVSIGAEEIVDGNAKMTLGMIWTIILRFAI K L V A K M 2 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1513.7988 O43707 O43707 126 140 ACTN4 Alpha-actinin-4 yes yes 2 2.3828E-10 162.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.96832 0.91973 13.814 7 Median 1.0885 1.0495 6.3224 2 0 Median 0.96832 0.82009 11.72 3 0 Median 0.84436 0.91973 NaN 1 0 Median 0.95519 0.818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84606000 41155000 43451000 57125000 27626000 29498000 11659000 5744300 5914600 12897000 6238000 6659400 2924900 1546300 1378600 0 0 0 0 0 0 23615 1585 24621 124690;124691;124692;124693;124694;124695;124696 125948;125949;125950;125951;125952;125953;125954;125955;125956;125957 125948 10 LVSIGAEEIVDGNVK NVNKALDFIASKGVKLVSIGAEEIVDGNVK LVSIGAEEIVDGNVKMTLGMIWTIILRFAI K L V V K M 1 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 3 0 0 15 0 1541.8301 P12814;H9KV75;P35609;A0A494C1A0;G3V2W4;G3V2N5;A0A494C033;G3V2X9;A0A494C166;A0A494C0Q3;G3V5M4;G3V2E8;A0A494C031 P12814 107 121 ACTN1;ACTN2 Alpha-actinin-1;Alpha-actinin-2 yes no 2 1.1989E-09 108.37 By MS/MS By matching By MS/MS 2 1 1 0.97525 0.94482 20.344 4 Median 0.97525 0.94482 4.3169 2 2 Median 0.87815 0.77839 NaN 1 0 Median 1.2084 1.2697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22652000 10839000 11813000 19238000 9046900 10192000 1787300 1016200 771130 1625900 775440 850490 0 0 0 0 0 0 0 0 0 23616 1983 24622 124697;124698;124699;124700 125958;125959;125960 125958 2 LVSIPEEIGK LFDLPLKVLVVSNNKLVSIPEEIGKLKDLM VSNNKLVSIPEEIGKLKDLMELDISCNEIQ K L V G K L 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1083.6176 Q5VUJ6 Q5VUJ6 191 200 LRCH2 Leucine-rich repeat and calponin homology domain-containing protein 2 yes yes 2 0.022064 36.557 By matching By matching By MS/MS 2 1 1 1.1437 1.0285 47.198 4 Median 1.1559 1.0865 55.446 2 0 Median 1.663 1.441 NaN 1 0 Median 0.57853 0.62911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21955000 9943700 12011000 15476000 6687400 8788300 3748300 1580200 2168100 2730700 1676100 1054600 0 0 0 0 0 0 0 0 0 23617 3114 24623 124701;124702;124703;124704 125961 125961 1 LVSIVADQLEK QIVCDWTDYDERMKKLVSIVADQLEKNRLP RMKKLVSIVADQLEKNRLPSVHPHHSMLYP K L V E K N 1 0 0 1 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1213.6918 O15294 O15294 489 499 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.00013635 99.815 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.0459 1.0521 17.795 6 Median 1.2493 1.2122 NaN 1 0 Median 1.053 0.90334 NaN 1 0 Median 1.152 1.2515 23.578 3 0 Plateau NaN NaN NaN 0 0 Median 1.0388 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median 34912000 16558000 18354000 7858500 3795000 4063500 4398600 2096800 2301800 20627000 9487400 11140000 0 0 0 2027900 1178700 849270 0 0 0 23618 1537 24624 124705;124706;124707;124708;124709;124710 125962;125963;125964;125965;125966;125967;125968 125963 7 LVSLASEVQDLHLAQR PTPFTNAVQLLLTLKLVSLASEVQDLHLAQ VSLASEVQDLHLAQRKEMASGFSKGPTLGL K L V Q R K 2 1 0 1 0 2 1 0 1 0 4 0 0 0 0 2 0 0 0 2 0 0 16 0 1777.9686 Q96N66;H7C2M4;C9J4E9;A0A0G2JNX6;A9C4B8 Q96N66 112 127 MBOAT7 Lysophospholipid acyltransferase 7 yes no 3 6.4852E-11 111.74 By MS/MS By MS/MS 2 1 0.91798 0.81111 9.9966 3 Plateau 0.74853 0.74052 1.3841 2 0 Median 1.1012 0.87978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57489000 28424000 29065000 15499000 8498100 7000900 41990000 19926000 22064000 0 0 0 0 0 0 0 0 0 0 0 0 23619 3706 24625 124711;124712;124713 125969;125970;125971;125972 125972 4 LVSLIGSK LDSRFVFDRPLPVSRLVSLIGSKTQIPTQR RPLPVSRLVSLIGSKTQIPTQRYGRRPYGV R L V S K T 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 1 0 0 8 0 815.51165 P25786;F5GX11 P25786 108 115 PSMA1 Proteasome subunit alpha type-1 yes no 2 0.0025485 123.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 1 1.2479 1.095 15.657 11 Median 1.1849 1.0936 0.1781 2 0 Median 1.3524 1.1324 5.284 2 0 Median 1.2541 1.1979 2.7214 2 0 Median 1.3473 1.14 26.145 3 0 Plateau 1.2008 1.2268 NaN 1 0 Median 1.1736 0.98372 NaN 1 0 Median 80710000 36239000 44470000 49667000 22674000 26993000 18239000 7612000 10627000 7586000 3562900 4023100 2452100 1112200 1339900 2475400 1183600 1291800 290300 94593 195710 23620 2136 24626 124714;124715;124716;124717;124718;124719;124720;124721;124722;124723;124724 125973;125974;125975;125976;125977;125978;125979;125980;125981;125982;125983;125984;125985 125974 13 LVSLYFDTK KSEKRTFLRQALEARLVSLYFDTKRYQEAL QALEARLVSLYFDTKRYQEALHLGSQLLRE R L V T K R 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 1 1 0 1 1 0 0 9 0 1084.5805 O00231;J3QRY4;J3KSW3 O00231 133 141 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.0049967 58.981 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1625 1.0015 12.817 6 Median 1.0715 1.0022 12.009 2 0 Median 1.1625 1.0015 2.3227 2 0 Median 1.2941 1.2731 NaN 1 0 Median 1.0041 0.89587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43404000 20323000 23081000 12498000 6343100 6155300 24755000 11490000 13265000 5492600 2170800 3321800 657770 318720 339050 0 0 0 0 0 0 23621 1448 24627 124725;124726;124727;124728;124729;124730 125986;125987;125988;125989 125989 4 LVSLYFDTKR KSEKRTFLRQALEARLVSLYFDTKRYQEAL ALEARLVSLYFDTKRYQEALHLGSQLLREL R L V K R Y 0 1 0 1 0 0 0 0 0 0 2 1 0 1 0 1 1 0 1 1 0 0 10 1 1240.6816 O00231;J3QRY4;J3KSW3 O00231 133 142 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2;3 0.00029456 67.334 By MS/MS By matching 2 1 1.3666 1.3183 10.413 3 Median 1.3486 1.3463 14.626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3666 1.3183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12839000 5833100 7006200 11593000 5324100 6269100 0 0 0 0 0 0 1246100 509030 737080 0 0 0 0 0 0 23622 1448 24628 124731;124732;124733 125990;125991;125992 125990 3 LVSNHSLHETSSVFVDSLTK HIGGSPFKAKVTGPRLVSNHSLHETSSVFV SLHETSSVFVDSLTKATCAPQHGAPGPGPA R L V T K A 0 0 1 1 0 0 1 0 2 0 3 1 0 1 0 5 2 0 0 3 0 0 20 0 2199.1172 P21333;Q60FE5;A0A087WWY3 P21333 2521 2540 FLNA Filamin-A no no 2;3;4 2.2967E-19 125.23 By MS/MS By MS/MS By MS/MS By matching 10 6 3 1 1.0626 1.0521 26.892 20 Median 1.1897 1.1657 16.519 10 1 Median 1.0288 0.91689 28.585 6 1 Median 1.0686 1.1736 21.238 3 0 Median 1.5423 1.7204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 851540000 371890000 479650000 550870000 232050000 318820000 235190000 109880000 125300000 64161000 29436000 34725000 1323100 516790 806300 0 0 0 0 0 0 23623 2088;3120 24629 124734;124735;124736;124737;124738;124739;124740;124741;124742;124743;124744;124745;124746;124747;124748;124749;124750;124751;124752;124753 125993;125994;125995;125996;125997;125998;125999;126000;126001;126002;126003;126004;126005;126006;126007;126008;126009;126010;126011;126012;126013;126014;126015;126016;126017 125999 25 LVSPETEASEESLQFNLEKPATGER GAAPDVDDKLCLRMKLVSPETEASEESLQF ESLQFNLEKPATGERKNGSTAVAESVASPQ K L V E R K 2 1 1 0 0 1 6 1 0 0 3 1 0 1 2 3 2 0 0 1 0 0 25 1 2760.3454 A6NNK5;Q12888;C9JXV0 A6NNK5 996 1020 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 2.6454E-17 68.762 By MS/MS By MS/MS 1 1 0.65741 0.70703 33.377 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46606 0.55839 NaN 1 0 Median 0.92733 0.89523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26491000 17209000 9282600 0 0 0 0 0 0 25706000 16843000 8863700 784950 366050 418900 0 0 0 0 0 0 23624 530 24630 124754;124755 126018;126019;126020;126021 126018 4 LVSPGSANETSSILVESVTR HIVGSPFKAKVTGQRLVSPGSANETSSILV SANETSSILVESVTRSSTETCYSAIPKASS R L V T R S 1 1 1 0 0 0 2 1 0 1 2 0 0 0 1 5 2 0 0 3 0 0 20 0 2045.0641 O75369;E7EN95;A0A0A0MT44 O75369 2476 2495 FLNB Filamin-B yes no 2;3 2.0625E-13 98.694 By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 0.91278 0.83385 85.304 12 Median 0.92086 0.90927 155.45 4 0 Median 0.94242 0.81493 9.5599 4 0 Median 0.69876 0.76956 12.308 2 0 Median 0.98014 0.84938 8.7837 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64112000 35410000 28702000 42493000 23894000 18599000 10645000 5320500 5324500 10681000 6047000 4634200 293240 148650 144590 0 0 0 0 0 0 23625 1664 24631 124756;124757;124758;124759;124760;124761;124762;124763;124764;124765;124766;124767 126022;126023;126024;126025;126026;126027;126028;126029 126022 8 LVSQDNFGFDLPAVEAATK RKAAMRETWLSENQRLVSQDNFGFDLPAVE DNFGFDLPAVEAATKKHEAIETDIAAYEER R L V T K K 3 0 1 2 0 1 1 1 0 0 2 1 0 2 1 1 1 0 0 2 0 0 19 0 2021.0106 Q01082;A0A087WUZ3;F8W6C1 Q01082 444 462 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.2914E-10 96.591 By MS/MS By matching By MS/MS By MS/MS 2 2 3 2 0.92928 0.83961 10.636 9 Median 1.0033 0.9542 12.572 2 0 Median 0.96692 0.84658 1.1697 2 0 Median 0.73137 0.80421 8.8364 3 0 Median 0.93868 0.85265 6.4696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53044000 28819000 24225000 8008500 3873700 4134900 3393300 1789600 1603800 40414000 22541000 17873000 1227500 614420 613090 0 0 0 0 0 0 23626 2681 24632 124768;124769;124770;124771;124772;124773;124774;124775;124776 126030;126031;126032;126033;126034;126035;126036;126037;126038 126032 9 LVSQEEMEFIQR TAEIIKTLPQKYRRKLVSQEEMEFIQRGGP RRKLVSQEEMEFIQRGGPE___________ K L V Q R G 0 1 0 0 0 2 3 0 0 1 1 0 1 1 0 1 0 0 0 1 0 0 12 0 1507.7341 P82909;D6R941 P82909 88 99 MRPS36 28S ribosomal protein S36, mitochondrial yes no 3 0.06051 12.767 By MS/MS By matching 3 2 1.2082 1.1612 8.256 5 Median 1.2082 1.1612 6.3741 3 0 Plateau 1.3842 1.1861 12.287 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22740000 9838300 12902000 21116000 9080600 12036000 1623400 757760 865630 0 0 0 0 0 0 0 0 0 0 0 0 23627 2654 24633 124777;124778;124779;124780;124781 126039 126039 1 LVSQIEDAMR SGQETDWRSTAFRQKLVSQIEDAMRKAGVA AFRQKLVSQIEDAMRKAGVAHSKSSKDMES K L V M R K 1 1 0 1 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 10 0 1160.586 Q96RN5;F8WDM6;F2Z2B7 Q96RN5 19 28 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 2 0.0012701 85.67 By MS/MS 1 1.1242 1.1953 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1242 1.1953 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8023900 3024200 4999700 0 0 0 0 0 0 8023900 3024200 4999700 0 0 0 0 0 0 0 0 0 23628 3727 24634 124782 126040 126040 1 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK ALMRLNQLKPGLQYKLVSQTGPVHAPIFTM VEVDGNSFEASGPSKKTAKLHVAVKVLQDM K L V S K K 2 0 1 1 0 1 2 3 1 1 1 1 1 2 3 5 2 0 0 4 0 0 31 0 3187.5496 Q12906 Q12906 420 450 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 4.4017E-09 40.544 By matching By MS/MS 1 1 0.63932 0.61219 17.946 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78384 0.69502 NaN 1 0 Median 0.52145 0.53923 NaN 1 0 Median NaN NaN NaN 0 0 Median 4077300 2527600 1549700 0 0 0 0 0 0 0 0 0 253820 138770 115050 3823400 2388800 1434600 0 0 0 23629 2769 24635 124783;124784 126041 126041 1488 1 LVSRPKPLSAVPK ERAKPYHLSTSSVFRLVSRPKPLSAVPKQV FRLVSRPKPLSAVPKQVVTGTVLTRSVFIN R L V P K Q 1 1 0 0 0 0 0 0 0 0 2 2 0 0 3 2 0 0 0 2 0 0 13 2 1390.866 Q8WYP5 Q8WYP5 1029 1041 AHCTF1 Protein ELYS yes yes 3 0.059945 14.353 By MS/MS 2 0.57606 0.76276 3.2858 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57606 0.76276 3.2858 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3973800 2474800 1499000 0 0 0 0 0 0 3973800 2474800 1499000 0 0 0 0 0 0 0 0 0 23630 3524 24636 124785;124786 126042;126043 126042 2 LVSSAVSPSIIPQEDPSQQFLQQSLER SLSHLVPALRLPGRKLVSSAVSPSIIPQED QEDPSQQFLQQSLERVYSLQHLDPQGAQEL K L V E R V 1 1 0 1 0 5 2 0 0 2 3 0 0 1 3 6 0 0 0 2 0 0 27 0 2982.5298 Q96HW7 Q96HW7 594 620 INTS4 Integrator complex subunit 4 yes yes 3 3.3836E-05 30.749 By MS/MS By matching 1 1 0.67025 0.65461 10.401 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56772 0.60819 NaN 1 0 Median 0.7913 0.70457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4006200 2521000 1485200 0 0 0 0 0 0 3886700 2453600 1433100 119470 67374 52095 0 0 0 0 0 0 23631 3671 24637 124787;124788 126044 126044 1 LVSSDPEINTK TVHLEKINKMEWWSRLVSSDPEINTKKINP WWSRLVSSDPEINTKKINPENSKLSDLDSE R L V T K K 0 0 1 1 0 0 1 0 0 1 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1201.619 Q9Y266 Q9Y266 257 267 NUDC Nuclear migration protein nudC yes yes 2 0.00014501 99.815 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 0.98942 0.90812 10.448 9 Median 1.0281 0.94948 2.6964 3 2 Plateau 0.98942 0.85854 7.4556 3 0 Median NaN NaN NaN 0 0 Median 1.1214 0.94847 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88868 0.74329 3.3006 2 0 Median 61684000 30748000 30935000 25454000 12040000 13413000 30214000 15712000 14502000 0 0 0 2438900 1125600 1313300 0 0 0 3576700 1870000 1706700 23632 4376 24638 124789;124790;124791;124792;124793;124794;124795;124796;124797 126045;126046;126047;126048;126049;126050;126051;126052;126053;126054;126055;126056;126057 126055 13 LVSSDPEINTKK TVHLEKINKMEWWSRLVSSDPEINTKKINP WSRLVSSDPEINTKKINPENSKLSDLDSET R L V K K I 0 0 1 1 0 0 1 0 0 1 1 2 0 0 1 2 1 0 0 1 0 0 12 1 1329.714 Q9Y266 Q9Y266 257 268 NUDC Nuclear migration protein nudC yes yes 2;3 0.0071821 28.327 By MS/MS By matching 3 1 0.93785 0.88915 7.0617 4 Median 0.99369 0.93025 8.0634 3 0 Median 0.88515 0.84986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4669200 2471500 2197700 3428100 1833400 1594700 1241100 638130 602960 0 0 0 0 0 0 0 0 0 0 0 0 23633 4376 24639 124798;124799;124800;124801 126058;126059;126060 126059 3 LVSSPELGHDEFSTQALAR ADANDMEAWLVDALRLVSSPELGHDEFSTQ PELGHDEFSTQALARQHRALEEEIRSHRPT R L V A R Q 2 1 0 1 0 1 2 1 1 0 3 0 0 1 1 3 1 0 0 1 0 0 19 0 2056.0225 O15020 O15020 769 787 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 3.6263E-19 120.9 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1.1974 1.0516 30.259 7 Median 1.0453 0.98109 NaN 1 0 Median 1.4784 1.2396 9.8675 2 0 Median 0.7336 0.7997 NaN 1 0 Median 1.1974 1.0516 NaN 1 0 Median 0.99331 1.03 NaN 1 0 Median 2.5351 2.0798 NaN 1 0 Median 79630000 41024000 38606000 13945000 6196600 7748000 9555000 3967500 5587500 46524000 25970000 20554000 2342200 1041400 1300700 7040500 3785400 3255200 223100 63190 159910 23634 1512 24640 124802;124803;124804;124805;124806;124807;124808 126061;126062;126063;126064;126065;126066 126061 6 LVSTATTAPPSTAPSGPGSVQK SPVTTTVPSVQPIVKLVSTATTAPPSTAPS APPSTAPSGPGSVQKYIVVSLPPTGEGKGG K L V Q K Y 3 0 0 0 0 1 0 2 0 0 1 1 0 0 4 4 4 0 0 2 0 0 22 0 2053.0691 J3KR72;P49848 J3KR72 641 662 TAF6 Transcription initiation factor TFIID subunit 6 yes no 2 1.1676E-08 50.843 By MS/MS By matching 1 1 0.55357 0.53098 12.446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45947 0.48624 NaN 1 0 Median 0.66694 0.57982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5571900 3673300 1898600 0 0 0 0 0 0 4802400 3253800 1548600 769530 419520 350010 0 0 0 0 0 0 23635 1323 24641 124809;124810 126067 126067 1 LVSTLISK LDPRTSEFTAAFVGRLVSTLISKAGRELGE TAAFVGRLVSTLISKAGRELGENLDQILRA R L V S K A 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 2 1 0 0 1 0 0 8 0 859.53787 Q96P70 Q96P70 766 773 IPO9 Importin-9 yes yes 2 0.0088504 61.962 By MS/MS By MS/MS By matching 1 1 1 1.5005 1.2631 11.828 3 Median 1.0787 1.0654 NaN 1 0 Median 1.5654 1.3373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5005 1.2631 NaN 1 0 Median 8676800 3527800 5149000 3361600 1608200 1753400 5043900 1794300 3249600 0 0 0 0 0 0 0 0 0 271280 125300 145970 23636 3711 24642 124811;124812;124813 126068;126069;126070 126069 3 LVSVLQNK PLPKKSIDTGMGLERLVSVLQNKMSNYDTD TGMGLERLVSVLQNKMSNYDTDLFVPYFEA R L V N K M 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 8 0 899.54402 P49588 P49588 247 254 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0024312 121.29 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1062 1.0437 25.93 6 Median 0.95555 0.9376 18.646 2 0 Median 1.1593 0.99525 3.2363 2 0 Median 0.98528 1.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.02 1.7749 NaN 1 0 Median 54243000 24878000 29365000 10529000 5217700 5311400 41378000 18521000 22857000 1734700 910440 824260 0 0 0 0 0 0 601090 228850 372240 23637 2385 24643 124814;124815;124816;124817;124818;124819 126071;126072;126073;126074;126075;126076 126074 6 LVTANLITIQNK ELAVLAQKIGFCPPRLVTANLITIQNKELE PPRLVTANLITIQNKELERVIGDCRFVSAT R L V N K E 1 0 2 0 0 1 0 0 0 2 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1326.7871 A0A087WVD4;Q9HBK9 A0A087WVD4 230 241 AS3MT Arsenite methyltransferase yes no 2 5.3218E-06 123.86 By MS/MS By MS/MS 1 1 1.0279 1.0212 31.978 2 Median 0.88332 0.81452 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1962 1.2803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28373000 14498000 13874000 24461000 12343000 12118000 0 0 0 3912200 2155300 1756900 0 0 0 0 0 0 0 0 0 23638 41 24644 124820;124821 126077;126078;126079 126077 3 LVTANTIDQK RCHRIGQTKPVVVYRLVTANTIDQKIVERA VVVYRLVTANTIDQKIVERAAAKRKLEKLI R L V Q K I 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 10 0 1101.603 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7;Q9NW36 F6XU50 598 607 HELLS Lymphoid-specific helicase yes no 2 0.00039409 88.819 By MS/MS By matching By MS/MS 1 1 1 1.0402 1.1436 73.978 3 Median 1.6254 1.6304 NaN 1 0 Median 0.39181 0.39357 NaN 1 0 Median 1.0402 1.1436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8612800 3976700 4636100 1729500 538400 1191100 603190 395370 207810 6280100 3042900 3237200 0 0 0 0 0 0 0 0 0 23639 211 24645 124822;124823;124824 126080;126081;126082 126081 3 LVTAVFSR FFVENVSELQLCAIKLVTAVFSRYEKHRQL LQLCAIKLVTAVFSRYEKHRQLILEEIFTS K L V S R Y 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 8 0 891.5178 A0A590UJS4;Q6KC79 A0A590UJS4 1437 1444 NIPBL Nipped-B-like protein yes no 2 0.0034121 97.798 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.2335 1.0793 17.017 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70012 0.78218 NaN 1 0 Median 1.2335 1.0793 NaN 1 0 Median 0.87932 0.92112 NaN 1 0 Median 1.3741 1.1569 2.7031 2 0 Median 7897700 3856200 4041400 0 0 0 0 0 0 1823600 1089200 734350 447480 235040 212440 4438400 2046800 2391500 1188200 485120 703120 23640 488 24646 124825;124826;124827;124828;124829 126083;126084;126085;126086 126084 4 LVTDLLQR RLEPLVNDLTLRIGRLVTDLLQREKEIAFL LTLRIGRLVTDLLQREKEIAFLSEKISNLT R L V Q R E 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 8 0 956.56548 Q70UQ0 Q70UQ0 308 315 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 0.005111 77.674 By MS/MS By matching By MS/MS 4 1 2 1.0302 1.025 21.068 7 Median 0.95566 0.9416 25.315 4 1 Median 1.1875 1.025 NaN 1 0 Median 1.0868 1.2021 10.295 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23462000 11174000 12288000 14269000 7199900 7068900 1569800 673100 896720 7623600 3301000 4322600 0 0 0 0 0 0 0 0 0 23641 3208 24647 124830;124831;124832;124833;124834;124835;124836 126087;126088 126088 2 LVTDQNISENWR GNICRSPIAEAVFRKLVTDQNISENWRVDS FRKLVTDQNISENWRVDSAATSGYEIGNPP K L V W R V 0 1 2 1 0 1 1 0 0 1 1 0 0 0 0 1 1 1 0 1 0 0 12 0 1473.7212 P24666;G5E9R5;F2Z2Q9 P24666 30 41 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2 2.5674E-06 165.83 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1749 1.1021 5.6345 6 Median 1.1782 1.1068 NaN 1 0 Median 1.2892 1.0791 3.3215 2 0 Median 1.1272 1.112 1.6114 2 0 Median 1.1693 0.96641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109710000 49188000 60524000 79901000 35921000 43980000 14171000 6173900 7997400 14442000 6506400 7935700 1196700 585990 610720 0 0 0 0 0 0 23642 2125 24648 124837;124838;124839;124840;124841;124842 126089;126090;126091;126092;126093;126094;126095;126096;126097 126090 9 LVTDTAEILSR PEEITPENHVEGTARLVTDTAEILSRLGGV GTARLVTDTAEILSRLGGVELLQDTLGHVM R L V S R L 1 1 0 1 0 0 1 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1216.6663 Q9Y6X8 Q9Y6X8 218 228 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 2 0.0020633 55.567 By MS/MS By MS/MS 1 2 1.3119 1.118 11.775 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9553 1.0196 NaN 1 0 Median 1.4187 1.2 10.014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6745900 3362300 3383600 0 0 0 0 0 0 5117200 2633600 2483600 1628600 728640 899990 0 0 0 0 0 0 23643 4500 24649 124843;124844;124845 126098;126099;126100 126098 3 LVTEMGTYATQSALSSSRPTK ELKPEEEITVGPVQKLVTEMGTYATQSALS TYATQSALSSSRPTKKEEDRPPLRGFLLDG K L V T K K 2 1 0 0 0 1 1 1 0 0 2 1 1 0 1 4 4 0 1 1 0 0 21 1 2227.1154 P53618 P53618 514 534 COPB1 Coatomer subunit beta yes yes 3 2.9525E-26 145.88 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 0.86156 0.95358 19.739 7 Plateau 0.90727 0.9387 0.71974 2 0 Median 0.85764 0.8341 5.4441 2 0 Median 0.85036 0.96377 NaN 1 0 Median 0.57174 0.54945 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86156 0.75303 NaN 1 0 Median 78496000 40941000 37555000 58631000 30362000 28269000 5563700 3145100 2418700 12053000 6203800 5849300 1087400 674340 413060 0 0 0 1161300 556240 605090 23644 2472 24650 124846;124847;124848;124849;124850;124851;124852 126101;126102;126103;126104 126102 4 LVTEMGTYATQSALSSSRPTKK ELKPEEEITVGPVQKLVTEMGTYATQSALS YATQSALSSSRPTKKEEDRPPLRGFLLDGD K L V K K E 2 1 0 0 0 1 1 1 0 0 2 2 1 0 1 4 4 0 1 1 0 0 22 2 2355.2104 P53618 P53618 514 535 COPB1 Coatomer subunit beta yes yes 3;4 1.4607E-07 49.089 By MS/MS 2 0.90608 1.0299 4.1659 2 Median 0.90608 1.0299 4.1659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34990000 17442000 17548000 34990000 17442000 17548000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23645 2472 24651 124853;124854 126105;126106 126105 2 LVTFENVR WIRRPVGASFSFGGKLVTFENVRMPSHQGA SFSFGGKLVTFENVRMPSHQGAEQQQQQHH K L V V R M 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 8 0 976.53418 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3;H0Y8V7 D6REX3 404 411 SEC31A Protein transport protein Sec31A yes no 2 2.7569E-05 116.54 By MS/MS By MS/MS 1 1 1.2397 1.1199 5.2499 2 Median 1.2045 1.1622 NaN 1 1 Median 1.2759 1.079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12493000 5521800 6971200 8046900 3507300 4539600 4446100 2014600 2431600 0 0 0 0 0 0 0 0 0 0 0 0 23646 823 24652 124855;124856 126107;126108 126107 2 LVTGGYDYDVK TKTVSALGLDPSGARLVTGGYDYDVKFWDF SGARLVTGGYDYDVKFWDFAGMDASFKAFR R L V V K F 0 0 0 2 0 0 0 2 0 0 1 1 0 0 0 0 1 0 2 2 0 0 11 0 1228.5976 Q9NW82;D6RIW8 Q9NW82 197 207 WDR70 WD repeat-containing protein 70 yes no 2 0.00065076 71.349 By matching By MS/MS By matching 1 3 2 0.97769 0.84724 101.85 5 Median NaN NaN NaN 0 0 Median 6.2483 5.5654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97769 0.84724 31.861 3 1 Median NaN NaN NaN 0 0 Median 0.50636 0.43486 NaN 1 0 Median 19987000 5764900 14222000 0 0 0 10261000 1022000 9238800 0 0 0 8606700 4140700 4466100 0 0 0 1119200 602260 516960 23647 4147 24653 124857;124858;124859;124860;124861;124862 126109;126110 126109 2 LVTLISQQATLLASNEAFKK YIAGFSLLLSFLLRRLVTLISQQATLLASN SQQATLLASNEAFKKQAESASEAAKKYMEE R L V K K Q 3 0 1 0 0 2 1 0 0 1 4 2 0 1 0 2 2 0 0 1 0 0 20 1 2174.2311 P51572;A0A2R8Y5M6;C9JSP1;C9JQ75;C9J0M4;C9JMD7;C9JM14 P51572 119 138 BCAP31 B-cell receptor-associated protein 31 yes no 3 6.8295E-09 68.567 By MS/MS By matching 1 1 1.4465 1.3979 17.517 2 Median 1.2135 1.235 NaN 1 0 Median 1.7243 1.5822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5660400 2443800 3216600 4881900 2131000 2750900 778480 312780 465700 0 0 0 0 0 0 0 0 0 0 0 0 23648 2436 24654 124863;124864 126111 126111 1 LVTLPVSFAQLK GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK NNKLVTLPVSFAQLKNLKWLDLKDNPLDPV K L V L K N 1 0 0 0 0 1 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 12 0 1314.7911 Q96AG4 Q96AG4 97 108 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 6.3504E-06 98.249 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 3 3 6 1.1727 1.0362 15.814 24 Median 1.0572 0.97639 9.3068 4 0 Median 1.196 1.0373 10.688 4 0 Median 1.1595 1.1486 9.7179 4 0 Median 1.24 1.0371 20.366 3 0 Median 1.3143 1.2998 9.9938 3 0 Median 1.2194 1.0057 20.878 6 0 Median 203960000 93224000 110740000 125600000 58740000 66865000 4861300 2269200 2592100 22309000 9639000 12670000 24967000 11093000 13874000 3404100 1401200 2002900 22817000 10082000 12736000 23649 3600 24655 124865;124866;124867;124868;124869;124870;124871;124872;124873;124874;124875;124876;124877;124878;124879;124880;124881;124882;124883;124884;124885;124886;124887;124888 126112;126113;126114;126115;126116;126117;126118;126119;126120;126121;126122;126123;126124;126125;126126;126127;126128;126129;126130;126131;126132;126133;126134;126135;126136;126137 126129 26 LVTMFDK MEGMTEEQKEHEAMKLVTMFDKLSRNRVIQ QKEHEAMKLVTMFDKLSRNRVIQPMGMSPR K L V D K L 0 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 7 0 852.44153 Q9NPQ8;H0YE35;H0YC88 Q9NPQ8 483 489 RIC8A Synembryn-A yes no 2 0.056644 38.133 By MS/MS By matching 1 1 1.173 1.0701 19.335 2 Median 1.2734 1.2269 NaN 1 0 Median 1.0805 0.9334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4194400 1947700 2246700 2637800 1327000 1310700 1556700 620680 935990 0 0 0 0 0 0 0 0 0 0 0 0 23650 4057 24656 124889;124890 126138 126138 1 LVTMQIWDTAGQER IGADFLTKEVMVDDRLVTMQIWDTAGQERF RLVTMQIWDTAGQERFQSLGVAFYRGADCC R L V E R F 1 1 0 1 0 2 1 1 0 1 1 0 1 0 0 0 2 1 0 1 0 0 14 0 1646.8086 P51149;C9J592;C9J8S3;C9IZZ0 P51149 56 69 RAB7A Ras-related protein Rab-7a yes no 2;3 1.6685E-11 178.81 By MS/MS By MS/MS By MS/MS 4 2 1 1.1836 1.1241 12.216 7 Median 1.086 1.0303 13.427 4 2 Median 1.342 1.135 0.79258 2 0 Median 0.95047 0.90965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196940000 91132000 105810000 174290000 81364000 92930000 18414000 7792200 10622000 4235500 1975600 2259900 0 0 0 0 0 0 0 0 0 23651 2428 24657;24658 124891;124892;124893;124894;124895;124896;124897 126139;126140;126141;126142;126143;126144;126145;126146;126147;126148 126141 1135 10 LVTPHGESEQIGVIPSK LHVINASDDEWWQARLVTPHGESEQIGVIP TPHGESEQIGVIPSKKRVEKKERARLKTVK R L V S K K 0 0 0 0 0 1 2 2 1 2 1 1 0 0 2 2 1 0 0 2 0 0 17 0 1789.9574 Q5JUW8;Q92796 Q5JUW8 566 582 DLG3 Disks large homolog 3 yes no 3 0.00029601 38.093 By matching By MS/MS By matching 1 2 1 0.85439 0.80266 31.06 4 Median NaN NaN NaN 0 0 Median 1.2412 1.0624 NaN 1 0 Median 0.59899 0.60554 17.838 2 0 Median 1.1168 0.93787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16410000 9228000 7181700 0 0 0 1417100 608460 808600 14567000 8431200 6135700 425700 188270 237430 0 0 0 0 0 0 23652 3056 24659 124898;124899;124900;124901 126149;126150;126151 126150 3 LVTPHGESEQIGVIPSKK LHVINASDDEWWQARLVTPHGESEQIGVIP PHGESEQIGVIPSKKRVEKKERARLKTVKF R L V K K R 0 0 0 0 0 1 2 2 1 2 1 2 0 0 2 2 1 0 0 2 0 0 18 1 1918.0524 Q5JUW8;Q92796 Q5JUW8 566 583 DLG3 Disks large homolog 3 yes no 4 0.021189 15.09 By matching By MS/MS 1 1 0.79002 0.79798 25.908 2 Median 1.0237 0.95841 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6097 0.6644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3641200 1843300 1797900 1464700 534300 930420 0 0 0 2176500 1309000 867440 0 0 0 0 0 0 0 0 0 23653 3056 24660 124902;124903 126152 126152 1 LVTQDTENELKK SQKHLQINQTFEELRLVTQDTENELKKLQQ ELRLVTQDTENELKKLQQTQEYFIIQYQES R L V K K L 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 2 0 0 1 0 0 12 1 1416.746 P51692;K7EK35;P42229;K7EIF9 P51692 153 164 STAT5B;STAT5A Signal transducer and activator of transcription 5B;Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A yes no 3 0.027406 20.463 By MS/MS By matching 2 1 1.0085 0.97271 11.165 3 Plateau 0.91377 0.91328 8.9162 2 0 Median 0.80528 0.77855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5249600 2534400 2715200 3882900 1922600 1960300 1366600 611790 754850 0 0 0 0 0 0 0 0 0 0 0 0 23654 2441 24661 124904;124905;124906 126153;126154 126154 2 LVTQPTLLSATAGRPSGSTPLGPLAR QGQQMREAQFLYAQKLVTQPTLLSATAGRP AGRPSGSTPLGPLARVPPTAAVAQVFERGN K L V A R V 3 2 0 0 0 1 0 3 0 0 5 0 0 0 4 3 4 0 0 1 0 0 26 1 2560.4337 Q8IVW6 Q8IVW6 46 71 ARID3B AT-rich interactive domain-containing protein 3B yes yes 3 3.5959E-13 55.734 By MS/MS By matching 1 1 0.75842 0.77336 37.686 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53091 0.59245 NaN 1 0 Median 1.0834 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10829000 6395200 4434200 0 0 0 0 0 0 10582000 6284600 4297600 247070 110570 136510 0 0 0 0 0 0 23655 3320 24662 124907;124908 126155 126155 1 LVTREEFAIMQTPAGELYDK LISTITASVQNPALRLVTREEFAIMQTPAG EFAIMQTPAGELYDKSIIQSAQQDSIKKAN R L V D K S 2 1 0 1 0 1 3 1 0 1 2 1 1 1 1 0 2 0 1 1 0 0 20 1 2310.1566 Q92616 Q92616 757 776 GCN1L1 Translational activator GCN1 yes yes 3 2.6745E-07 59.469 By MS/MS 1 0.86857 0.87191 NaN 1 Median 0.86857 0.87191 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12980000 6089100 6890900 12980000 6089100 6890900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23656 3544 24663 124909 126156 126156 1 LVTSIGDVVNHDPVVGDR GKAAPGYHMAKLIIKLVTSIGDVVNHDPVV SIGDVVNHDPVVGDRLKVIFLENYRVSLAE K L V D R L 0 1 1 3 0 0 0 2 1 1 1 0 0 0 1 1 1 0 0 5 0 0 18 0 1890.9799 P11216;H0Y4Z6 P11216 623 640 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase yes no 3 2.4656E-06 56.215 By MS/MS By matching By matching 1 1 1 0.98245 0.94584 7.3532 3 Plateau 0.98245 0.94584 NaN 1 0 Median 1.0153 0.88187 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95287 0.81653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20059000 9746700 10312000 17100000 8516600 8583200 2205200 851770 1353400 0 0 0 753810 378340 375470 0 0 0 0 0 0 23657 1956 24664 124910;124911;124912 126157;126158 126157 2 LVTTGVLK VGENADSQIKLSIKRLVTTGVLKQTKGVGA IKLSIKRLVTTGVLKQTKGVGASGSFRLAK R L V L K Q 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 8 0 829.5273 P07305 P07305 75 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0022962 111.04 By MS/MS By matching By MS/MS By MS/MS 2 3 4 4 1.6597 1.388 45.671 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79244 0.75553 1.3727 2 0 Median 2.525 2.089 22.754 3 0 Median 0.85885 0.8491 5.5177 4 0 Median 2.0152 1.644 17.786 4 0 Median 235180000 117470000 117710000 0 0 0 0 0 0 10464000 5465700 4997900 12133000 3165100 8968000 179710000 97873000 81833000 32877000 10967000 21909000 23658 1884 24665 124913;124914;124915;124916;124917;124918;124919;124920;124921;124922;124923;124924;124925 126159;126160;126161;126162;126163;126164;126165 126162 7 LVTVTTSVGTGTR LLAGGRTKTWLVGNKLVTVTTSVGTGTRSL NKLVTVTTSVGTGTRSLLGLDSGELQSGPE K L V T R S 0 1 0 0 0 0 0 2 0 0 1 0 0 0 0 1 5 0 0 3 0 0 13 0 1290.7143 A0A2R8Y7X5;A0A2R8Y6C9;A0A2R8Y5F1;A0A2R8YGU4;X5D2U8;H3BMQ0;A0A2R8YDZ2;A0A2R8YDR3;A0A2R8Y7C8;A0A2R8YGD6;P49815 A0A2R8Y7X5 1022 1034 TSC2 Tuberin yes no 2 5.9879E-07 105.86 By MS/MS By MS/MS 1 1 1.0267 0.91694 15.059 2 Median 0.87305 0.82432 NaN 1 0 Median 1.2073 1.02 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9118000 4689300 4428600 6643300 3469600 3173700 2474700 1219700 1254900 0 0 0 0 0 0 0 0 0 0 0 0 23659 384 24666 124926;124927 126166;126167;126168;126169 126167 4 LVTVVEEK GQPPGPKVLRKLPGRLVTVVEEKELVRRRR LRKLPGRLVTVVEEKELVRRRRQQRGAAST R L V E K E 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 0 3 0 0 8 0 915.5277 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 2754 2761 SRCAP Helicase SRCAP yes no 2 0.028622 40.268 By MS/MS 1 1.0162 1.1192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0162 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1240800 589390 651390 0 0 0 0 0 0 1240800 589390 651390 0 0 0 0 0 0 0 0 0 23660 3199 24667 124928 126170;126171 126170 2 LVVDLTDIDPDVAYSSVPYEK QNSVKTFGETHPFTKLVVDLTDIDPDVAYS DIDPDVAYSSVPYEKGFALLFYLEQLLGGP K L V E K G 1 0 0 4 0 0 1 0 0 1 2 1 0 0 2 2 1 0 2 4 0 0 21 0 2337.1628 P09960 P09960 366 386 LTA4H Leukotriene A-4 hydrolase yes yes 2;3 0.037092 20.381 By MS/MS By MS/MS 1 1 0.91799 0.83687 18.921 2 Median 0.76073 0.73207 NaN 1 0 Median 1.1078 0.95667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4477600 2368800 2108800 3002300 1639600 1362700 1475300 729200 746090 0 0 0 0 0 0 0 0 0 0 0 0 23661 1924 24668 124929;124930 126172;126173;126174 126172 3 LVVDSHVQYR GNAFHLCREVLRLTKLVVDSHVQYRLGNVD LRLTKLVVDSHVQYRLGNVDAFQLADGLQY K L V Y R L 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 10 0 1214.6408 Q6P2Q9;I3L0J9 Q6P2Q9 556 565 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 9.1963E-05 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 4 4 4 1.3123 1.1841 12.959 20 Median 1.262 1.1893 0.1087 2 0 Median 1.3752 1.1544 9.0623 4 1 Median 0.97564 1.0635 6.7729 2 0 Median 1.4658 1.2916 18.861 4 0 Median 1.0891 1.118 7.1397 4 2 Median 1.5017 1.2322 15.691 4 0 Median 214240000 96706000 117530000 15427000 6728900 8698100 41224000 15932000 25292000 62520000 30968000 31552000 17427000 7026600 10400000 59623000 28517000 31107000 18017000 7533700 10483000 23662 3157 24669 124931;124932;124933;124934;124935;124936;124937;124938;124939;124940;124941;124942;124943;124944;124945;124946;124947;124948;124949;124950 126175;126176;126177;126178;126179;126180;126181;126182;126183;126184;126185;126186;126187;126188;126189;126190;126191;126192;126193;126194;126195;126196;126197;126198;126199;126200;126201;126202;126203;126204;126205;126206;126207 126204 33 LVVECFSQLK KLQKFLGRPFPFKDKLVVECFSQLKVLNKV PFKDKLVVECFSQLKVLNKVLAIREQMSAL K L V L K V 0 0 0 0 1 1 1 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 10 0 1221.6427 Q9NU22 Q9NU22 2812 2821 MDN1 Midasin yes yes 2 0.0010774 68.735 By matching By MS/MS By matching 1 1 1 1.0188 1.0888 17.89 3 Median 0.90402 0.80008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0188 1.0926 NaN 1 0 Median 1.1766 1.0888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8124000 4014600 4109400 732010 400600 331420 0 0 0 7196700 3507500 3689300 195290 106590 88698 0 0 0 0 0 0 23663 4112 24670 124951;124952;124953 126208 126208 1 LVVENVDVLTQMR SLMWHISSQVAELKKLVVENVDVLTQMRTS KKLVVENVDVLTQMRTSFDKPDQMAALFKR K L V M R T 0 1 1 1 0 1 1 0 0 0 2 0 1 0 0 0 1 0 0 4 0 0 13 0 1514.8127 Q9Y2A7 Q9Y2A7 869 881 NCKAP1 Nck-associated protein 1 yes yes 2 5.9879E-07 105.86 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1.1251 1.0846 29.798 7 Median 1.1534 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0136 1.0983 16.811 2 0 Median 1.2938 1.1102 3.3036 2 0 Median 0.50035 0.5141 NaN 1 0 Median 0.98324 0.83209 NaN 1 0 Median 9569600 4436400 5133200 1562600 716980 845650 0 0 0 5786500 2705800 3080700 1445800 575540 870290 607080 368280 238800 167540 69814 97726 23664 4383 24671 124954;124955;124956;124957;124958;124959;124960 126209;126210;126211;126212 126209 4 LVVFDAR RECGYRIMYKKRTKRLVVFDAR________ MYKKRTKRLVVFDAR_______________ R L V A R - 1 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 7 0 818.46504 P53803 P53803 52 58 POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 yes yes 2 0.0045798 100.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 2 1 1.1836 1.0702 17.056 9 Median 1.1897 1.1012 9.4106 2 0 Median 1.3005 1.1043 NaN 1 0 Median 1.3806 1.3636 29.048 2 0 Median 1.3582 1.0702 NaN 1 0 Median 0.97663 1.0152 4.5926 2 0 Median 1.1836 0.91998 NaN 1 0 Median 35792000 16957000 18835000 8250200 3633800 4616400 7371400 3776000 3595400 11254000 5220700 6032900 1732000 710840 1021200 6999600 3527300 3472300 185050 88496 96551 23665 2475 24672 124961;124962;124963;124964;124965;124966;124967;124968;124969 126213;126214;126215;126216;126217;126218;126219;126220 126213 8 LVVGGLLSPEEDQSLLLSQFR SKWEGNYLFPRELFKLVVGGLLSPEEDQSL LSPEEDQSLLLSQFREYLDYDDTRYHTMQA K L V F R E 0 1 0 1 0 2 2 2 0 0 6 0 0 1 1 3 0 0 0 2 0 0 21 0 2299.2424 Q9BVI4;F5H303 Q9BVI4 152 172 NOC4L Nucleolar complex protein 4 homolog yes no 3 0.037054 11.622 By matching By MS/MS 1 1 0.92958 0.90173 31.93 2 Median NaN NaN NaN 0 0 Median 0.80684 0.71948 NaN 1 0 Median 1.071 1.1301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1421800 780940 640860 0 0 0 149950 66309 83638 1271900 714630 557230 0 0 0 0 0 0 0 0 0 23666 3854 24673 124970;124971 126221;126222 126222 2 LVVHEGSPVTSISAR FLFDMATGKLTKAKRLVVHEGSPVTSISAR LVVHEGSPVTSISARSWVSREARDPSLLIN R L V A R S 1 1 0 0 0 0 1 1 1 1 1 0 0 0 1 3 1 0 0 3 0 0 15 0 1550.8417 Q9H1Z4;A0A087X091 Q9H1Z4 346 360 WDR13 WD repeat-containing protein 13 yes no 2;3 5.2877E-05 74.769 By MS/MS By MS/MS By MS/MS 1 2 1 1.1023 1.149 27.246 4 Median 1.2549 1.2493 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.91874 0.99481 8.542 2 0 Median 2.0376 1.7537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23076000 10065000 13011000 3616300 1227100 2389300 0 0 0 15999000 7725300 8274200 3460300 1112800 2347500 0 0 0 0 0 0 23667 3937 24674 124972;124973;124974;124975 126223;126224;126225;126226;126227;126228 126224 6 LVVLATPQVSDSMR LVLGSSLKQHRTTRRLVVLATPQVSDSMRK RLVVLATPQVSDSMRKVLETVFDEVIMVDV R L V M R K 1 1 0 1 0 1 0 0 0 0 2 0 1 0 1 2 1 0 0 3 0 0 14 0 1514.8127 P46976;C9JQ42;G5E9W8 P46976 35 48 GYG1 Glycogenin-1 yes no 2 0.0024852 42.743 By MS/MS 1 1.1725 0.94254 NaN 1 Median NaN NaN NaN 0 0 Median 1.1725 0.94254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14534000 7085600 7448200 0 0 0 14534000 7085600 7448200 0 0 0 0 0 0 0 0 0 0 0 0 23668 2351 24675 124976 126229;126230 126229 2 LVVLATPQVSDSMRK LVLGSSLKQHRTTRRLVVLATPQVSDSMRK LVVLATPQVSDSMRKVLETVFDEVIMVDVL R L V R K V 1 1 0 1 0 1 0 0 0 0 2 1 1 0 1 2 1 0 0 3 0 0 15 1 1642.9076 P46976;C9JQ42;G5E9W8 P46976 35 49 GYG1 Glycogenin-1 yes no 3 0.01384 30.133 By MS/MS By matching 1 1 0.56556 0.59507 124.44 2 Median 1.4017 1.4345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22818 0.24684 NaN 1 0 Median NaN NaN NaN 0 0 Median 5127900 2781900 2346000 2515400 717410 1798000 0 0 0 0 0 0 0 0 0 2612500 2064500 547990 0 0 0 23669 2351 24676 124977;124978 126231 126231 0 LVVLGIRPIR KKAAKAGLSQSLFERLVVLGIRPIRLQVQY SLFERLVVLGIRPIRLQVQYRMHPALSAFP R L V I R L 0 2 0 0 0 0 0 1 0 2 2 0 0 0 1 0 0 0 0 2 0 0 10 1 1134.7601 Q92900 Q92900 699 708 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0029 94.662 By MS/MS By matching By matching By matching 1 1 1 1 0.87697 1.131 15.993 4 Linear 1.0134 1.1259 NaN 1 0 Median 0.92792 0.8946 NaN 1 0 Median 0.82882 1.008 NaN 1 0 Median 0.79242 0.77577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19001000 9608400 9392700 10961000 5346600 5614100 1601600 790890 810720 5430800 2921600 2509300 1007900 549360 458580 0 0 0 0 0 0 23670 3564 24677 124979;124980;124981;124982 126232 126232 1 LVVLGSGGVGK ______________________________ REYKLVVLGSGGVGKSALTVQFVQGIFVEK K L V G K S 0 0 0 0 0 0 0 4 0 0 2 1 0 0 0 1 0 0 0 3 0 0 11 0 984.59678 P61224;P62834;F5H7Y6;E7ESV4;F5GX62;F5H004;F5H6R7;F5GYB5;A0A075B6Q0;F5H4H0;F5H500;F5H0B7;F5H491;F5GWU8;F5H077;F5GYH7;F8WBC0 P61224 6 16 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 2 0.00013666 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 3 6 4 1.2448 1.1019 51.828 24 Median 1.0772 0.96531 88.341 4 1 Median 0.92866 0.77899 56.158 4 2 Median 1.1859 1.2744 8.5708 3 0 Median 1.4033 1.163 59.011 3 0 Median 1.2914 1.3697 10.324 6 0 Median 1.5347 1.2561 17.184 4 0 Linear 431080000 254810000 176260000 232860000 146470000 86383000 117200000 72747000 44458000 40292000 18140000 22152000 5290500 2111800 3178800 30385000 13271000 17114000 5045900 2070500 2975300 23671 2551 24678 124983;124984;124985;124986;124987;124988;124989;124990;124991;124992;124993;124994;124995;124996;124997;124998;124999;125000;125001;125002;125003;125004;125005;125006;125007 126233;126234;126235;126236;126237;126238;126239;126240;126241;126242;126243;126244;126245;126246;126247;126248;126249;126250;126251;126252;126253;126254;126255;126256;126257;126258;126259;126260;126261 126239 29 LVVLPFR DPDGRCAAMLVYGTRLVVLPFRRESLAEEH AMLVYGTRLVVLPFRRESLAEEHEGLVGEG R L V F R R 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 7 0 842.53781 Q10570 Q10570 159 165 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0024619 126.05 By matching By MS/MS By MS/MS 1 3 2 1.0837 1.029 6.6034 6 Median NaN NaN NaN 0 0 Median 1.1741 1.011 NaN 1 0 Median 0.91862 1.0207 9.5674 3 0 Median 1.1966 1.0456 1.1212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15378000 8136800 7241400 0 0 0 755560 347400 408160 13514000 7308700 6205700 1108300 480740 627560 0 0 0 0 0 0 23672 2753 24679 125008;125009;125010;125011;125012;125013 126262;126263;126264;126265;126266;126267;126268 126262 7 LVVLPFRR DPDGRCAAMLVYGTRLVVLPFRRESLAEEH MLVYGTRLVVLPFRRESLAEEHEGLVGEGQ R L V R R E 0 2 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 8 1 998.63892 Q10570 Q10570 159 166 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.012002 62.842 By MS/MS 2 1.0101 1.1901 9.4824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0101 1.1901 9.4824 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7763000 4057400 3705600 0 0 0 0 0 0 7763000 4057400 3705600 0 0 0 0 0 0 0 0 0 23673 2753 24680 125014;125015 126269 126269 1 LVVPASQCGSLIGK MTNSTAASRPPVTLRLVVPASQCGSLIGKG RLVVPASQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1427.7806 H3BRU6;F8VZX2;F8W0G4;F8VXH9;F8W1G6;H3BND9;J3QT27;E9PFP8;P57721;Q15366 Q15366 102 115 PCBP2;PCBP3 Poly(rC)-binding protein 3;Poly(rC)-binding protein 2 no no 2 4.7613E-06 94.616 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 2 2 2 0.97837 0.85639 25.676 15 Median 0.83214 0.78974 15.652 3 1 Median 1.0192 0.85639 1.5588 3 0 Median 1.0288 0.99398 20.106 3 0 Plateau 1.0355 0.86637 4.1662 2 0 Median 1.3372 1.3739 48.196 2 0 Median 0.84084 0.71162 13.069 2 0 Median 72838000 36483000 36355000 17264000 9544600 7719100 12122000 5858300 6264000 30782000 14909000 15873000 4329000 2092100 2236800 6891700 3364600 3527100 1449700 714700 735040 23674 2942;1077 24681 125016;125017;125018;125019;125020;125021;125022;125023;125024;125025;125026;125027;125028;125029;125030 126270;126271;126272;126273;126274;126275;126276;126277;126278;126279;126280;126281 126275 12 LVVPATQCGSLIGK MTNSTAASRPPVTLRLVVPATQCGSLIGKG RLVVPATQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 1 1 0 0 2 0 0 14 0 1441.7963 Q15365 Q15365 102 115 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.00013329 82.417 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1.0429 0.94656 29.089 7 Median NaN NaN NaN 0 0 Median 1.0429 0.88176 NaN 1 1 Median 0.98941 0.94656 40.081 3 1 Median NaN NaN NaN 0 0 Median 1.2461 1.2412 16.755 2 0 Median 0.9811 0.79858 NaN 1 0 Median 40147000 20590000 19557000 0 0 0 2707200 1260000 1447200 21912000 12063000 9849000 0 0 0 10256000 4690100 5565700 5272200 2577300 2694900 23675 2941 24682 125031;125032;125033;125034;125035;125036;125037 126282;126283;126284;126285;126286 126284 4 LVVQSAAPGSK LTNIQVPQQALPTQRLVVQSAAPGSKGGQV PTQRLVVQSAAPGSKGGQVSLTVHGTQQVH R L V S K G 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 2 0 0 0 2 0 0 11 0 1055.5975 P22670 P22670 178 188 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.033498 30.254 By MS/MS By matching 1 1 0.79788 0.75868 18.384 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79879 0.86401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79698 0.6662 NaN 1 0 Median 3174100 1761500 1412600 0 0 0 0 0 0 2790900 1577000 1213900 0 0 0 0 0 0 383220 184520 198700 23676 2104 24683 125038;125039 126287 126287 1 LVVSTQTALA AADDKEACFAVEGPKLVVSTQTALA_____ VEGPKLVVSTQTALA_______________ K L V L A - 2 0 0 0 0 1 0 0 0 0 2 0 0 0 0 1 2 0 0 2 0 0 10 0 1001.5757 CON__P02769 CON__P02769 598 607 yes yes 2 0.031465 47.067 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48962000 0 0 20563000 0 0 5384200 0 0 23015000 0 0 0 0 0 0 0 0 0 0 0 + 23677 746 24684 125040;125041;125042 126288;126289;126290 126290 3 LVVTQEDVELAYQEAMMNMAR VHQWLDIPEKWNKIKLVVTQEDVELAYQEA DVELAYQEAMMNMARLNRTAAGLMHTFNAH K L V A R L 3 1 1 1 0 2 3 0 0 0 2 0 3 0 0 0 1 0 1 3 0 0 21 0 2440.1437 P49903 P49903 226 246 SEPHS1 Selenide, water dikinase 1 yes yes 2;3 0.00025999 30.767 By matching By MS/MS 1 2 1.0115 0.91842 11.476 3 Median NaN NaN NaN 0 0 Median 1.0252 0.91842 NaN 1 0 Median 0.93141 0.98557 15.172 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961700 1952700 2009100 0 0 0 238720 119100 119620 3723000 1833600 1889400 0 0 0 0 0 0 0 0 0 23678 2404 24685 125043;125044;125045 126291;126292;126293 126292 3 LVVVDENDVVK LETIINRLVEAEVHRLVVVDENDVVKGIVS EVHRLVVVDENDVVKGIVSLSDILQALVLT R L V V K G 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 5 0 0 11 0 1227.6711 F8VYY9;P54619;H0YHF8;H0YIC9 F8VYY9 249 259 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 yes no 2 0.0018837 56.563 By MS/MS By MS/MS By matching 1 1 1 1.227 1.032 18.338 3 Median NaN NaN NaN 0 0 Median 1.227 1.032 NaN 1 0 Median 0.79387 0.76312 NaN 1 0 Median 1.2718 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16737000 8197400 8539200 0 0 0 8767000 3873600 4893400 7400600 4090300 3310200 568990 233520 335470 0 0 0 0 0 0 23679 1076 24686 125046;125047;125048 126294;126295;126296;126297 126295 4 LVVVELNNR RIVGVDGAIKALCNRLVVVELNNRTSRDLA KALCNRLVVVELNNRTSRDLAEQCVKVLEL R L V N R T 0 1 2 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 3 0 0 9 0 1054.6135 A0A087X2H1;Q9ULT8;G3V4V5 A0A087X2H1 106 114 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 2 0.0078737 50.607 By matching By MS/MS 1 2 0.81973 0.72242 3.341 3 Median 0.71548 0.70224 NaN 1 0 Median 0.85555 0.73637 2.7044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5476400 3017200 2459300 3166400 1815900 1350500 2310000 1201300 1108800 0 0 0 0 0 0 0 0 0 0 0 0 23680 137 24687 125049;125050;125051 126298 126298 1 LVVVGAGGVGK ______________________________ TEYKLVVVGAGGVGKSALTIQLIQNHFVDE K L V G K S 1 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 4 0 0 11 0 954.58622 P01111;G3V4K2;G3V5T7;P01112;P01116 P01111 6 16 NRAS;KRAS;HRAS GTPase NRas;GTPase HRas;GTPase HRas, N-terminally processed;GTPase KRas;GTPase KRas, N-terminally processed no no 2 0.00016656 80.438 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 1.3253 1.1333 13.468 10 Median 1.0932 1.0222 12.538 2 0 Median 1.4224 1.2072 0.13651 2 0 Median 1.014 0.95072 NaN 1 0 Median 1.2926 1.0718 NaN 1 0 Median 1.1716 1.2193 23.157 2 0 Median 1.5052 1.2247 8.9231 2 0 Median 87902000 40537000 47365000 36575000 17222000 19353000 12808000 5180500 7627200 23231000 11126000 12105000 6874400 3197600 3676800 4931700 2314500 2617200 3482800 1496400 1986400 23681 1831;1833;1832 24688 125052;125053;125054;125055;125056;125057;125058;125059;125060;125061 126299;126300;126301;126302;126303;126304;126305;126306;126307;126308;126309 126304 10 LVVVGGGGVGK GGPGPGDPPPSETHKLVVVGGGGVGKSALT ETHKLVVVGGGGVGKSALTIQFIQSYFVSD K L V G K S 0 0 0 0 0 0 0 5 0 0 1 1 0 0 0 0 0 0 0 4 0 0 11 0 940.57057 P62070;E9PQK5;E9PQC5;P10301 P10301 32 42 RRAS2;RRAS Ras-related protein R-Ras2;Ras-related protein R-Ras no no 2 0.00016656 80.438 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 1 1.281 1.1295 21.532 6 Median 0.97729 0.90507 NaN 1 0 Median 1.2064 1.0082 NaN 1 0 Median 1.2635 1.187 NaN 1 0 Median 1.2987 1.0748 NaN 1 0 Median 1.5713 1.5987 NaN 1 0 Median 1.6939 1.4258 NaN 1 0 Median 56608000 26237000 30371000 24488000 11989000 12499000 13164000 6027500 7136400 8067500 3909000 4158500 1711900 842670 869250 7411900 2836800 4575100 1764300 631890 1132400 23682 2567;1936 24689 125062;125063;125064;125065;125066;125067 126310;126311;126312;126313;126314;126315;126316;126317;126318 126311 9 LVWIPSER VIYNPATQADWTAKKLVWIPSERHGFEAAS ADWTAKKLVWIPSERHGFEAASIKEERGDE K L V E R H 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 0 8 0 998.55492 P35580;E7ERA5 P35580 35 42 MYH10 Myosin-10 yes no 2 0.0035981 86.472 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1.0534 0.87765 25.426 7 Median 1.0907 1.0237 NaN 1 0 Median 1.1336 0.96769 NaN 1 0 Median 0.63536 0.6978 NaN 1 1 Median 1.2162 1.053 NaN 1 0 Median 0.5587 0.58859 1.3417 2 0 Median 1.0534 0.87765 NaN 1 0 Median 31876000 17015000 14861000 11506000 5638400 5867800 7162000 3357200 3804800 6430900 4034700 2396200 150580 63782 86801 6103700 3719200 2384500 522670 202210 320460 23683 2245 24690 125068;125069;125070;125071;125072;125073;125074 126319;126320;126321;126322;126323;126324 126320 6 LVWVPSDK FINNPLAQADWAAKKLVWVPSDKSGFEPAS ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K L V D K S 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 2 0 0 8 0 942.51747 P35579;Q5BKV1;B1AH99 P35579 31 38 MYH9 Myosin-9 yes no 2 0.0078694 65.252 By MS/MS By MS/MS By MS/MS 1 1 1 1.1444 1.0532 22.057 3 Plateau 1.1983 1.1539 NaN 1 0 Median 1.0407 0.92173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70828 0.74235 NaN 1 0 Median NaN NaN NaN 0 0 Median 41538000 19713000 21825000 19205000 8564200 10641000 17070000 8281700 8787900 0 0 0 0 0 0 5262900 2866800 2396100 0 0 0 23684 2244 24691 125075;125076;125077 126325;126326;126327;126328 126325 4 LVYDGIR PAQPMDENEFIDASRLVYDGIRDIRKAVLM NEFIDASRLVYDGIRDIRKAVLMIRTPEEL R L V I R D 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 834.45995 P35221;G3XAM7 P35221 617 623 CTNNA1 Catenin alpha-1 yes no 2 0.007586 88.734 By matching By MS/MS By MS/MS By matching By matching 4 3 2 2 1 1.1605 1.0585 37.579 12 Median 1.0492 0.99935 9.4702 4 0 Median 1.3809 1.2084 9.2263 3 0 Median 0.98289 1.0216 26.435 2 0 Median 3.3637 2.5397 11.95 2 0 Median 0.83978 0.89324 NaN 1 0 Median NaN NaN NaN 0 0 Median 82484000 37257000 45226000 61562000 28104000 33457000 8379500 3518300 4861300 8017800 3867800 4149900 2582600 666940 1915600 1942500 1100000 842470 0 0 0 23685 2232 24692 125078;125079;125080;125081;125082;125083;125084;125085;125086;125087;125088;125089 126329;126330;126331;126332 126330 4 LVYILNR PKGRAVMISAIEKQKLVYILNRDAAARLTI ISAIEKQKLVYILNRDAAARLTISSPLEAH K L V N R D 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 7 0 889.53854 Q15393 Q15393 140 146 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0015613 130.84 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 5 2 4 1.0758 0.98373 15.679 20 Median 0.83434 0.83343 6.7465 3 0 Median 1.1382 0.92294 7.6564 3 0 Median 1.0396 1.1397 3.469 3 0 Median 1.245 1.0943 14.57 5 0 Median 0.96095 0.99214 22.223 2 0 Median 1.1359 0.93354 23.565 4 0 Median 72463000 36291000 36172000 9805500 5676400 4129100 14962000 7246500 7715000 36986000 18480000 18506000 4767900 2115500 2652500 4228400 1980600 2247700 1713500 791670 921850 23686 2946 24693 125090;125091;125092;125093;125094;125095;125096;125097;125098;125099;125100;125101;125102;125103;125104;125105;125106;125107;125108;125109 126333;126334;126335;126336;126337;126338;126339;126340;126341;126342;126343 126333 11 LVYLNEAWK TYVLNFLLLIINYKRLVYLNEAWKRQLQPK IINYKRLVYLNEAWKRQLQPKQD_______ R L V W K R 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 1 1 1 0 0 9 0 1134.6073 A0A3B3ISV4;Q8N0U8 A0A3B3ISV4 207 215 VKORC1L1 Vitamin K epoxide reductase complex subunit 1-like protein 1 yes no 2 0.035824 34.808 By MS/MS 2 1.1372 0.99111 37.292 2 Median NaN NaN NaN 0 0 Median 1.1372 0.99111 37.292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3949200 2072800 1876400 0 0 0 3949200 2072800 1876400 0 0 0 0 0 0 0 0 0 0 0 0 23687 428 24694 125110;125111 126344 126344 1 LVYLVENPGGYVAYSK DSAQNSVIIVDKNGRLVYLVENPGGYVAYS VYLVENPGGYVAYSKAATVTGKLVHANFGT R L V S K A 1 0 1 0 0 0 1 2 0 0 2 1 0 0 1 1 0 0 3 3 0 0 16 0 1770.9192 P02786;G3V0E5 P02786 209 224 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.00013936 61.435 By MS/MS By MS/MS 2 1 1.143 1.0426 12.36 3 Median 1.1485 1.0834 5.4297 2 0 Median 1.0024 0.88391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17056000 7522400 9533500 14466000 6393900 8072400 2589600 1128500 1461100 0 0 0 0 0 0 0 0 0 0 0 0 23688 1836 24695 125112;125113;125114 126345;126346;126347;126348 126347 4 LVYLYLMNYAK DVVNCMQTDNLELKKLVYLYLMNYAKSQPD ELKKLVYLYLMNYAKSQPDMAIMAVNSFVK K L V A K S 1 0 1 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 3 1 0 0 11 0 1389.7366 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6;K7EJX1;K7EN71;K7ERB2 A0A087X253 68 78 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.00074218 63.48 By MS/MS By MS/MS 1 2 1.1975 1.0733 8.4712 3 Median 1.1975 1.1834 NaN 1 1 Median 1.1812 1.0359 5.0253 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18100000 8207800 9892700 3298900 1561900 1737100 14802000 6645900 8155600 0 0 0 0 0 0 0 0 0 0 0 0 23689 128;2752 24696 125115;125116;125117 126349;126350;126351 126351 3 LWAHVYAGAPVSSPEYTK NQYKQNPEMFKQTARLWAHVYAGAPVSSPE HVYAGAPVSSPEYTKKIENLCAMGFDRNAV R L W T K K 3 0 0 0 0 0 1 1 1 0 1 1 0 0 2 2 1 1 2 2 0 0 18 0 1974.984 P61086;D6RDM7 P61086 147 164 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 2;3 2.1364E-12 134.99 By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 0.91744 0.78193 71.149 7 Median 0.77681 0.71742 12.176 2 0 Median 0.89288 0.75661 7.7198 2 0 Median 1.6132 1.5415 NaN 1 0 Median 0.91744 0.75854 NaN 1 0 Median 4.5939 4.7237 NaN 1 0 Median NaN NaN NaN 0 0 Median 141010000 76317000 64691000 125600000 69728000 55872000 7330400 3855000 3475400 2982500 1159300 1823100 1374100 746620 627470 3721900 828640 2893200 0 0 0 23690 2543 24697 125118;125119;125120;125121;125122;125123;125124 126352;126353;126354;126355;126356;126357 126352 6 LWATDHYQPLR YGYYFVSGGHDRVARLWATDHYQPLRIFAG RVARLWATDHYQPLRIFAGHLADVNCTRFH R L W L R I 1 1 0 1 0 1 0 0 1 0 2 0 0 0 1 0 1 1 1 0 0 0 11 0 1398.7044 Q15542 Q15542 611 621 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 3 8.8056E-05 72.006 By MS/MS By matching 1 1 0.86244 0.8204 5.9907 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73619 0.78637 NaN 1 0 Median 1.0103 0.8559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5128300 2542500 2585900 0 0 0 0 0 0 4727000 2353800 2373200 401280 188650 212630 0 0 0 0 0 0 23691 2957 24698 125125;125126 126358 126358 1 LWDCETGK DTKHVLTGSADNSCRLWDCETGKQLALLKT SADNSCRLWDCETGKQLALLKTNSAVRTCG R L W G K Q 0 0 0 1 1 0 1 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 1007.4382 Q13347;Q5TFK1 Q13347 78 85 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 2 0.014843 50.607 By MS/MS 1 1.0627 0.89553 NaN 1 Median NaN NaN NaN 0 0 Median 1.0627 0.89553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2612800 1380500 1232200 0 0 0 2612800 1380500 1232200 0 0 0 0 0 0 0 0 0 0 0 0 23692 2806 24699 125127 126359;126360 126359 2 LWDEVMQAVAR TANLRTLENPEPLLRLWDEVMQAVARLGAE PLLRLWDEVMQAVARLGAEPFPLRLPQRIV R L W A R L 2 1 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 2 0 0 11 0 1316.6547 Q9Y4C2 Q9Y4C2 690 700 TCAF1 TRPM8 channel-associated factor 1 yes yes 2 0.0083164 40.724 By MS/MS By matching 2 1 1.2381 1.0742 9.1899 3 Plateau NaN NaN NaN 0 0 Median 1.1916 1.0442 4.0002 2 0 Median NaN NaN NaN 0 0 Median 1.007 0.89749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3243500 1401600 1841900 0 0 0 3160900 1356600 1804300 0 0 0 82531 44947 37584 0 0 0 0 0 0 23693 4443 24700 125128;125129;125130 126361;126362 126362 2 LWDGVSNR SANMYVTGSKDGCIKLWDGVSNRCITTFEK SKDGCIKLWDGVSNRCITTFEKAHDGAEVC K L W N R C 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 8 0 945.46683 Q05048;A0A0A0MSZ9 Q05048 288 295 CSTF1 Cleavage stimulation factor subunit 1 yes no 2 5.7201E-06 139.31 By MS/MS By MS/MS 1 2 1.2303 1.0584 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2303 1.0584 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21379000 10749000 10630000 0 0 0 0 0 0 0 0 0 21379000 10749000 10630000 0 0 0 0 0 0 23694 2716 24701 125131;125132;125133 126363;126364;126365 126365 3 LWDHATMTEVK SEDKQILSADDKTVRLWDHATMTEVKSLNF KTVRLWDHATMTEVKSLNFNMSVSSMEYIP R L W V K S 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 1 0 0 11 0 1329.6387 Q9Y3F4 Q9Y3F4 168 178 STRAP Serine-threonine kinase receptor-associated protein yes yes 2;3 8.0863E-06 144.77 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 1.1675 1.0097 16.86 12 Median 1.2067 1.1113 6.2435 3 0 Median 1.2107 1.0307 24.408 3 1 Median 0.97026 0.96583 19.085 4 1 Median 1.0851 0.91919 8.0036 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176840000 79297000 97543000 76331000 35227000 41104000 68321000 29332000 38989000 25428000 11665000 13764000 6760000 3073900 3686000 0 0 0 0 0 0 23695 4429 24702 125134;125135;125136;125137;125138;125139;125140;125141;125142;125143;125144;125145;125146 126366;126367;126368;126369;126370;126371;126372;126373;126374;126375;126376;126377;126378;126379;126380;126381;126382 126377 17 LWDLTTGTTTR DGQFALSGSWDGTLRLWDLTTGTTTRRFVG GTLRLWDLTTGTTTRRFVGHTKDVLSVAFS R L W T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 11 0 1263.6459 P63244;J3KPE3;D6RHH4;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;D6RFX4;D6RFZ9;E9PD14;D6RAU2 P63244 89 99 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 9.9524E-19 157.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 4 2 2 1.1927 1.0938 120.27 14 Median 1.0347 0.97211 12.785 2 0 Median 1.6589 1.2851 14.383 4 0 Linear 1.6228 1.1744 25.969 4 2 Linear 0.13862 0.12232 316.23 2 1 Median 1.2358 1.2671 9.537 2 0 Median NaN NaN NaN 0 0 Median 597230000 270910000 326330000 334540000 158310000 176230000 90806000 38210000 52596000 136050000 54101000 81952000 29745000 17478000 12267000 6085700 2807900 3277700 0 0 0 23696 2624 24703 125147;125148;125149;125150;125151;125152;125153;125154;125155;125156;125157;125158;125159;125160 126383;126384;126385;126386;126387;126388;126389;126390;126391;126392;126393;126394;126395;126396;126397 126388 15 LWDLTTGTTTRR DGQFALSGSWDGTLRLWDLTTGTTTRRFVG TLRLWDLTTGTTTRRFVGHTKDVLSVAFSS R L W R R F 0 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 12 1 1419.747 P63244;J3KPE3;D6RHH4;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;D6RFX4;D6RFZ9;E9PD14;D6RAU2 P63244 89 100 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2;3 4.5994E-05 129.1 By MS/MS By matching By MS/MS By matching 2 1 3 1 0.99843 1.1137 29.538 7 Median 1.1034 1.1879 9.112 2 0 Median NaN NaN NaN 0 0 Median 0.92707 1.1455 NaN 1 0 Median 0.99843 0.88193 45.487 3 1 Median 0.7822 0.8179 NaN 1 0 Median NaN NaN NaN 0 0 Median 117810000 54459000 63352000 102820000 45747000 57077000 0 0 0 1765200 1002000 763210 11496000 6668800 4827100 1726000 1041700 684250 0 0 0 23697 2624 24704 125161;125162;125163;125164;125165;125166;125167 126398;126399;126400;126401;126402 126399 5 LWDLVAGK AEPQIITGSHDTTIRLWDLVAGKTRVTLTN SHDTTIRLWDLVAGKTRVTLTNHKKSVRAV R L W G K T 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 1 0 0 8 0 900.5069 O43660;H0YA24 O43660 356 363 PLRG1 Pleiotropic regulator 1 yes no 2 0.026088 62.659 By MS/MS 1 0.33135 0.32109 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33135 0.32109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19147000 15473000 3673300 0 0 0 0 0 0 19147000 15473000 3673300 0 0 0 0 0 0 0 0 0 23698 1580 24705 125168 126403 126403 1 LWDLYLR SYYKPDSPEYKAACKLWDLYLRTRNEFVQK PEYKAACKLWDLYLRTRNEFVQKGEADDED K L W L R T 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 1 1 0 0 0 7 0 977.53345 Q86U86;E7EVG2;H0Y5B5;C9JPI5;C9JQF1 Q86U86 140 146 PBRM1 Protein polybromo-1 yes no 2 0.03302 48.504 By matching By MS/MS 1 1 1.0655 1.0559 5.5268 2 Median NaN NaN NaN 0 0 Median 1.1412 1.0155 NaN 1 0 Median 0.99488 1.098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4672900 2387500 2285400 0 0 0 95525 45210 50315 4577400 2342300 2235100 0 0 0 0 0 0 0 0 0 23699 3273 24706 125169;125170 126404;126405 126405 2 LWEAGWK AEDSDSEPEPEDNVRLWEAGWKQRYYKNKF PEPEDNVRLWEAGWKQRYYKNKFDVDAADE R L W W K Q 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 0 0 7 0 888.44939 Q9H0D6 Q9H0D6 511 517 XRN2 5-3 exoribonuclease 2 yes yes 2 0.040795 44.692 By matching By MS/MS By matching 1 2 2 1.1696 1.1296 17.431 5 Median NaN NaN NaN 0 0 Median 1.1696 1.0038 NaN 1 0 Median 1.1049 1.2043 9.0658 2 0 Median 1.3003 1.1094 30.106 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7923000 3815500 4107400 0 0 0 1266700 588380 678370 6243100 3043300 3199800 413160 183890 229270 0 0 0 0 0 0 23700 3924 24707 125171;125172;125173;125174;125175 126406 126406 1 LWEEQLAAAK EAEKPEREAKEQHQKLWEEQLAAAKAQQEQ EQHQKLWEEQLAAAKAQQEQELAADAFKEL K L W A K A 3 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 10 0 1157.6081 K7ELL7;P14314 K7ELL7 197 206 PRKCSH Glucosidase 2 subunit beta yes no 2 0.00037911 80.438 By MS/MS By MS/MS 2 2 0.73588 0.67299 69.506 4 Median 0.73588 0.67299 37.56 2 0 Median 0.52171 0.46598 108.31 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 290560000 141810000 148750000 172100000 86515000 85587000 118450000 55291000 63162000 0 0 0 0 0 0 0 0 0 0 0 0 23701 1378 24708 125176;125177;125178;125179 126407;126408;126409;126410 126408 4 LWEISTGR NSKYILSSGKDSVAKLWEISTGRTLVRYTG GKDSVAKLWEISTGRTLVRYTGAGLSGRQV K L W G R T 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 8 0 960.50288 Q05048;A0A0A0MSZ9 Q05048 332 339 CSTF1 Cleavage stimulation factor subunit 1 yes no 2 0.0027118 127.12 By matching By MS/MS By MS/MS 1 2 1 1.2692 1.0992 68.599 4 Median NaN NaN NaN 0 0 Median 1.1693 1.0178 NaN 1 0 Median 1.9545 2.0667 100.05 2 1 Median 1.3777 1.1862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55676000 23437000 32240000 0 0 0 1303900 606500 697390 39573000 17004000 22569000 14800000 5826600 8973500 0 0 0 0 0 0 23702 2716 24709 125180;125181;125182;125183 126411;126412;126413 126413 3 LWEVATAR GGQWLVSGSDDGSLRLWEVATARCVRTVPV SDDGSLRLWEVATARCVRTVPVGGVVKSVA R L W A R C 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 944.50797 Q14137 Q14137 439 446 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.050613 51.854 By MS/MS 1 1.3525 1.1014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3525 1.1014 NaN 1 1 Median 1797700 734630 1063000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1797700 734630 1063000 23703 2856 24710 125184 126414 126414 1 LWFYIQPAMR QLEQLHRQGLLSLQKLWFYIQPAMRTMDIL LSLQKLWFYIQPAMRTMDILASLATSVDKG K L W M R T 1 1 0 0 0 1 0 0 0 1 1 0 1 1 1 0 0 1 1 0 0 0 10 0 1323.6798 Q9BSJ2;F2Z2B9 Q9BSJ2 324 333 TUBGCP2 Gamma-tubulin complex component 2 yes no 2 0.011127 43.027 By MS/MS By matching 1 1 1.0529 0.98618 14.72 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0251 1.0944 NaN 1 0 Median 1.0814 0.88869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1165000 588670 576280 0 0 0 0 0 0 1084300 550950 533320 80685 37724 42961 0 0 0 0 0 0 23704 3815 24711 125185;125186 126415 126415 1 LWGDIYFNPK ADTFGDINYQEFAKRLWGDIYFNPKTRKFT EFAKRLWGDIYFNPKTRKFTKKAPTSSSQR R L W P K T 0 0 1 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 0 0 0 10 0 1251.6288 Q15029 Q15029 343 352 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.012703 40.987 By matching By matching By matching By MS/MS By matching 1 2 1 2 2 0.93722 0.84247 13.921 8 Median 1.1596 1.1674 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72895 0.77467 10.854 2 0 Median 0.99341 0.85073 NaN 1 0 Median 0.87748 0.87682 8.5737 2 0 Median 0.98099 0.84075 1.2986 2 0 Median 9159800 4635900 4524000 1498500 727950 770580 0 0 0 3074700 1672000 1402700 308820 135920 172890 3945100 1930500 2014600 332660 169450 163210 23705 2917 24712 125187;125188;125189;125190;125191;125192;125193;125194 126416 126416 1 LWGEPVNLR RLQYYVPRGFWKQFRLWGEPVNLREQHDAL FWKQFRLWGEPVNLREQHDALEFFNSLVDS R L W L R E 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 1 0 1 0 0 9 0 1082.5873 Q93008;O00507 Q93008 1673 1681 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0070186 52.786 By MS/MS By matching By matching 1 1 1 1.0271 0.85246 4.1355 3 Median 0.88587 0.83347 NaN 1 0 Median 1.0271 0.85246 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0431 0.90306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10204000 5237700 4966700 8733000 4576900 4156100 1331600 599120 732510 0 0 0 139760 61674 78090 0 0 0 0 0 0 23706 3573 24713 125195;125196;125197 126417;126418 126418 2 LWGIPDQAR LSEPRQAEIRKECLRLWGIPDQARVAPSSS RKECLRLWGIPDQARVAPSSSDPKSKFFEL R L W A R V 1 1 0 1 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 9 0 1054.556 Q8N1G2 Q8N1G2 538 546 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 0.010839 47.849 By matching By MS/MS 1 1 0.98096 0.96781 1.5264 2 Median NaN NaN NaN 0 0 Median 1.0566 0.95742 NaN 1 0 Median 0.91072 0.97831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885400 1936800 1948700 0 0 0 895520 403610 491910 2989900 1533200 1456800 0 0 0 0 0 0 0 0 0 23707 3358 24714 125198;125199 126419 126419 1 LWGLEAQK GISEEEAAQYDRQIRLWGLEAQKRLRASRV QYDRQIRLWGLEAQKRLRASRVLLVGLKGL R L W Q K R 1 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 8 0 943.51272 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0R375 Q9UBE0 25 32 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 0.01731 48.756 By MS/MS By matching 1 1 0.87178 0.77591 3.4715 2 Median 0.81456 0.7571 NaN 1 0 Median 0.93303 0.7952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21611000 11591000 10020000 10182000 5780400 4401900 11429000 5810300 5618200 0 0 0 0 0 0 0 0 0 0 0 0 23708 4237 24715 125200;125201 126420;126421 126420 2 LWGLEAQKR GISEEEAAQYDRQIRLWGLEAQKRLRASRV YDRQIRLWGLEAQKRLRASRVLLVGLKGLG R L W K R L 1 1 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 9 1 1099.6138 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0R375 Q9UBE0 25 33 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 0.002025 86.794 By MS/MS 2 1.04 1.1142 NaN 1 Median 1.04 1.1142 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7842800 3723900 4118900 7842800 3723900 4118900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23709 4237 24716 125202;125203 126422;126423 126422 2 LWGLTEMFPER EEDDDEELDETLSERLWGLTEMFPERVRSA LSERLWGLTEMFPERVRSAAGATFDLSLFV R L W E R V 0 1 0 0 0 0 2 1 0 0 2 0 1 1 1 0 1 1 0 0 0 0 11 0 1377.6751 Q9NS69 Q9NS69 48 58 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2 0.00042523 76.465 By MS/MS By MS/MS By matching 1 2 3 1.0821 0.92042 31.267 6 Median 0.95883 0.95344 NaN 1 1 Median 0.92259 0.7832 43.484 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1544 0.88855 33.042 3 0 Median 16208000 8492800 7715700 4235400 2121500 2113900 2639700 1150900 1488800 0 0 0 0 0 0 0 0 0 9333300 5220400 4113000 23710 4096 24717 125204;125205;125206;125207;125208;125209 126424;126425;126426 126426 3 LWGTQDVSQDIQEMK INRKEEENAKQILQRLWGTQDVSQDIQEMK LWGTQDVSQDIQEMKDESARMSQEKQVTVL R L W M K D 0 0 0 2 0 3 1 1 0 1 1 1 1 0 0 1 1 1 0 1 0 0 15 0 1776.8352 P11169;Q8TDB8 P11169 229 243 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 2 0.00026934 69.979 By MS/MS By MS/MS 1 1 2.3189 2.1647 85.896 2 Median 4.0023 3.9735 NaN 1 0 Median 1.3436 1.1793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5252900 1582800 3670100 3715000 829220 2885700 1537900 753550 784350 0 0 0 0 0 0 0 0 0 0 0 0 23711 1952 24718 125210;125211 126427;126428 126427 2 LWGTQDVSQDIQEMKDESAR INRKEEENAKQILQRLWGTQDVSQDIQEMK DVSQDIQEMKDESARMSQEKQVTVLELFRV R L W A R M 1 1 0 3 0 3 2 1 0 1 1 1 1 0 0 2 1 1 0 1 0 0 20 1 2335.075 P11169;Q8TDB8 P11169 229 248 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 3 2.1336E-19 117.65 By MS/MS By MS/MS 1 2 1.3628 1.3401 56.944 3 Plateau 1.9836 2.0726 NaN 1 0 Median 0.82883 0.78472 14.016 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32411000 12640000 19771000 19254000 6230600 13023000 13157000 6409100 6748000 0 0 0 0 0 0 0 0 0 0 0 0 23712 1952 24719 125212;125213;125214 126429;126430;126431 126429 3 LWGVIDVK HIVFEGEKEFDQNVKLWGVIDVKRSYVTMT EFDQNVKLWGVIDVKRSYVTMTATKIEITM K L W V K R 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 0 0 1 0 2 0 0 8 0 928.5382 Q9UHD1;E9PHZ2 Q9UHD1 282 289 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.028842 40.103 By MS/MS By matching By matching 1 1 1 0.93131 0.79341 17.232 3 Median 1.0157 0.94782 NaN 1 0 Median 0.93131 0.79341 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77443 0.67155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24850000 13004000 11846000 4526500 2458500 2068100 20229000 10488000 9741100 0 0 0 94586 57448 37138 0 0 0 0 0 0 23713 4275 24720 125215;125216;125217 126432 126432 1 LWGWASPLR MTYRLLNLSKVIDKRLWGWASPLRQFSILP KVIDKRLWGWASPLRQFSILPPHILTRLEE R L W L R Q 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 0 2 0 0 0 0 9 0 1084.5818 Q8N3C0 Q8N3C0 1120 1128 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.02621 51.854 By MS/MS 1 1.0631 1.0744 NaN 1 Median 1.0631 1.0744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3183100 1653100 1530000 3183100 1653100 1530000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23714 3366 24721 125218 126433 126433 1 LWIANYSLPR QTWYHEGPNSLKVARLWIANYSLPRAMKRL LKVARLWIANYSLPRAMKRLEEARLHKEIP R L W P R A 1 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 1 0 0 0 10 0 1231.6713 O43172 O43172 179 188 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.005882 49.813 By MS/MS By matching By MS/MS 1 1 1 1.0281 0.96113 16.513 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76146 0.75566 NaN 1 0 Median 1.1188 0.96113 NaN 1 0 Median 1.0281 1.0368 NaN 1 0 Median NaN NaN NaN 0 0 Median 28982000 16066000 12917000 0 0 0 0 0 0 23772000 13589000 10184000 2330500 1057100 1273400 2879700 1419800 1459800 0 0 0 23715 1557 24722 125219;125220;125221 126434;126435;126436;126437 126437 4 LWISVAR TLEDEEDSQICTVGRLWISVARYHIEVNRV SQICTVGRLWISVARYHIEVNRVPAGNWVL R L W A R Y 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 7 0 843.49667 Q15029 Q15029 530 536 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.014908 73.039 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1589 1.2161 8.1136 5 Median NaN NaN NaN 0 0 Median 1.7455 1.4571 NaN 1 0 Median 1.1396 1.2349 2.1661 2 0 Median 1.404 1.1962 NaN 1 0 Median 1.1589 1.2156 NaN 1 0 Median NaN NaN NaN 0 0 Median 14583000 6564600 8018200 0 0 0 729420 275700 453710 7841200 3617600 4223600 1485500 635830 849630 4526700 2035500 2491200 0 0 0 23716 2917 24723 125222;125223;125224;125225;125226 126438;126439;126440;126441;126442 126439 5 LWKEEEDGQWK YIKRFASGGCDNLIKLWKEEEDGQWKEEQK NLIKLWKEEEDGQWKEEQKLEAHSDWVRDV K L W W K E 0 0 0 1 0 1 3 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 11 1 1446.6779 P55735;A8MXL6 P55735 193 203 SEC13 Protein SEC13 homolog yes no 3 0.010159 30.872 By MS/MS 1 0.93085 0.97619 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93085 0.97619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2867500 1516400 1351100 0 0 0 0 0 0 2867500 1516400 1351100 0 0 0 0 0 0 0 0 0 23717 2500 24724 125227 126443 126443 1 LWKEEEDGQWKEEQK YIKRFASGGCDNLIKLWKEEEDGQWKEEQK LWKEEEDGQWKEEQKLEAHSDWVRDVAWAP K L W Q K L 0 0 0 1 0 2 5 1 0 0 1 3 0 0 0 0 0 2 0 0 0 0 15 2 1960.9167 P55735;A8MXL6 P55735 193 207 SEC13 Protein SEC13 homolog yes no 3 1.4518E-09 119.32 By MS/MS 1 0.95123 0.98179 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95123 0.98179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11079000 5576800 5502700 0 0 0 0 0 0 11079000 5576800 5502700 0 0 0 0 0 0 0 0 0 23718 2500 24725 125228 126444;126445 126445 2 LWLDGYSVTDAVALR IFVGNTTLIDEDVYRLWLDGYSVTDAVALR LWLDGYSVTDAVALRVRSGILEQTGATAAV R L W L R V 2 1 0 2 0 0 0 1 0 0 3 0 0 0 0 1 1 1 1 2 0 0 15 0 1677.8726 O43427;E9PJW6 O43427 22 36 FIBP Acidic fibroblast growth factor intracellular-binding protein yes no 2 2.7542E-09 100.55 By MS/MS 1 0.77977 0.66915 NaN 1 Median NaN NaN NaN 0 0 Median 0.77977 0.66915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2162400 1143600 1018800 0 0 0 2162400 1143600 1018800 0 0 0 0 0 0 0 0 0 0 0 0 23719 1572 24726 125229 126446 126446 1 LWLESPPGGAPPIFLPSDGQALVLGR ______________________________ PIFLPSDGQALVLGRGPLTQVTDRKCSRTQ R L W G R G 2 1 0 1 0 1 1 4 0 1 5 0 0 1 5 2 0 1 0 1 0 0 26 0 2686.4483 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1;A0A0D9SEV0;M0R000;A0A1B0GU66;M0QX49 M0QYH2 10 35 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.0027442 26.435 By MS/MS 1 0.28412 0.29843 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28412 0.29843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2402100 1769200 632840 0 0 0 0 0 0 2402100 1769200 632840 0 0 0 0 0 0 0 0 0 23720 1418 24727 125230 126447;126448 126447 2 LWLFGYDEQR YDLYITYDKYYQTPRLWLFGYDEQRQPLTV YQTPRLWLFGYDEQRQPLTVEHMYEDISQD R L W Q R Q 0 1 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 10 0 1325.6404 Q9NT62 Q9NT62 215 224 ATG3 Ubiquitin-like-conjugating enzyme ATG3 yes yes 2 0.0027284 59.245 By MS/MS By matching By matching 1 1 1 1.1894 1.218 35.083 3 Median 1.1894 1.218 NaN 1 0 Median 1.1395 0.96068 NaN 1 0 Median 1.9972 1.9163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3510500 1511900 1998700 785170 309800 475370 1849000 890410 958620 876340 311650 564690 0 0 0 0 0 0 0 0 0 23721 4106 24728 125231;125232;125233 126449 126449 1 LWMAAMK AMKLNECVDHTPKLKLWMAAMKEDPTVSAL VDHTPKLKLWMAAMKEDPTVSALLTSEKDW K L W M K E 2 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 7 0 849.4241 P78417;Q5TA02;Q5TA01 P78417 201 207 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.021008 59.641 By MS/MS By MS/MS By matching 1 1 1 1.1526 1.0817 6.2501 3 Median 1.0568 0.97832 NaN 1 0 Median 1.2755 1.0817 NaN 1 0 Median 1.1526 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31807000 15102000 16705000 26300000 12648000 13652000 2033400 884260 1149200 3474100 1569700 1904400 0 0 0 0 0 0 0 0 0 23722 2646 24729 125234;125235;125236 126450;126451;126452;126453 126451 4 LWNEVLASLK AQQSSLIREDKSNAKLWNEVLASLKDRPAS KSNAKLWNEVLASLKDRPASGSPFQLFLSK K L W L K D 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 1 0 1 0 1 0 0 10 0 1171.6601 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 706 715 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.04531 29.473 By matching By matching By MS/MS 1 3 2 0.90653 0.84867 6.1904 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75157 0.82456 NaN 1 0 Median 0.9522 0.8248 9.0141 3 0 Median 0.90536 0.87798 0.76702 2 0 Median NaN NaN NaN 0 0 Median 20130000 10414000 9715400 0 0 0 0 0 0 7159700 3901600 3258100 7379500 3617200 3762300 5590500 2895600 2695000 0 0 0 23723 20 24730 125237;125238;125239;125240;125241;125242 126454 126454 1 LWNLNNYR KQNPFWWTHQRHDGKLWNLNNYRTDMIQAL HQRHDGKLWNLNNYRTDMIQALGGVEGILE K L W Y R T 0 1 3 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 8 0 1091.5512 Q6P2Q9;I3L3Z8 Q6P2Q9 1464 1471 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0015558 144.29 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 3 1 1 1.1358 1.0001 10.112 7 Median NaN NaN NaN 0 0 Median 1.1716 1.0001 NaN 1 0 Median 0.87961 0.95874 NaN 1 0 Median 1.1995 1.0524 14.676 3 0 Median 1.0953 1.1261 NaN 1 0 Median 1.1358 0.95087 NaN 1 0 Median 38415000 18909000 19506000 0 0 0 4174300 1849600 2324700 20381000 10442000 9938700 2438300 1001100 1437200 10397000 5127600 5269200 1024200 488390 535770 23724 3157 24731 125243;125244;125245;125246;125247;125248;125249;125250 126455;126456;126457;126458;126459;126460 126459 6 LWNTLGVCK DNRQIVSGSRDKTIKLWNTLGVCKYTVQDE RDKTIKLWNTLGVCKYTVQDESHSEWVSCV K L W C K Y 0 0 1 0 1 0 0 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 9 0 1089.5641 P63244;J3KPE3;D6RHH4;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;D6RFZ9;D6RBD0;E9PD14;D6RAU2 P63244 131 139 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.0052544 72.485 By MS/MS 1 0.63872 0.58722 NaN 1 Median 0.63872 0.58722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13210000 7563400 5646600 13210000 7563400 5646600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23725 2624 24732 125251 126461 126461 1 LWQEEQER MYELVHRMKGTEGLRLWQEEQERKVQALSE KGTEGLRLWQEEQERKVQALSEMASEQLKR R L W E R K 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 8 0 1116.52 Q53GS7 Q53GS7 149 156 GLE1 Nucleoporin GLE1 yes yes 2 0.017258 68.915 By MS/MS 1 1.1064 1.1767 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1064 1.1767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2014400 1025100 989240 0 0 0 0 0 0 2014400 1025100 989240 0 0 0 0 0 0 0 0 0 23726 3031 24733 125252 126462 126462 1 LWQTTEEIPK ENQDECVLNVISHARLWQTTEEIPKRETYC ISHARLWQTTEEIPKRETYCPVIVDNLIQL R L W P K R 0 0 0 0 0 1 2 0 0 1 1 1 0 0 1 0 2 1 0 0 0 0 10 0 1243.6449 Q9BZE1;S4R369 Q9BZE1 163 172 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.04171 30.57 By MS/MS By MS/MS By matching 1 1 1 0.76335 0.79535 25.66 3 Median 0.67581 0.63143 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76335 0.79535 NaN 1 0 Median 1.2553 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15594000 9620400 5973500 7374100 4943100 2431100 0 0 0 7790100 4539900 3250100 429630 137380 292260 0 0 0 0 0 0 23727 3897 24734 125253;125254;125255 126463;126464 126464 2 LWQTTEEIPKR ENQDECVLNVISHARLWQTTEEIPKRETYC SHARLWQTTEEIPKRETYCPVIVDNLIQLC R L W K R E 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 0 2 1 0 0 0 0 11 1 1399.746 Q9BZE1;S4R369 Q9BZE1 163 173 MRPL37 39S ribosomal protein L37, mitochondrial yes no 3 4.4877E-05 94.616 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 0.90693 0.97176 22.132 5 Median 0.90693 0.97176 NaN 1 0 Median 0.79557 0.67715 NaN 1 0 Median 0.83359 0.93409 25.011 2 1 Median 1.265 1.1127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26256000 13705000 12551000 9916800 5094600 4822200 2578300 1491600 1086600 12924000 6745700 6178700 836850 372990 463850 0 0 0 0 0 0 23728 3897 24735 125256;125257;125258;125259;125260 126465;126466;126467 126465 3 LWQTVVGK DGELYASGSEDGTLRLWQTVVGKTYGLWKC SEDGTLRLWQTVVGKTYGLWKCVLPEEDSG R L W G K T 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 8 0 929.53345 Q9Y3F4;H0YH33 Q9Y3F4 291 298 STRAP Serine-threonine kinase receptor-associated protein yes no 2 0.0035231 91.041 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.2409 1.1623 17.156 7 Median 1.0481 0.99954 28.954 2 0 Median 1.2789 1.0839 9.8799 2 0 Median 1.2837 1.2775 10.175 2 0 Median 1.175 0.99974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69761000 32080000 37681000 34791000 15338000 19453000 11883000 5422000 6461400 14947000 7441700 7505600 8139300 3878900 4260400 0 0 0 0 0 0 23729 4429 24736 125261;125262;125263;125264;125265;125266;125267 126468;126469;126470;126471;126472;126473;126474;126475 126474 8 LWSDFKDQQK ALELSGTAVPPDLEKLWSDFKDQQKAEGKI PDLEKLWSDFKDQQKAEGKIIKKSSGFSGK K L W Q K A 0 0 0 2 0 2 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 10 1 1293.6354 Q7L014;A0A0C4DG89 Q7L014 752 761 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 0.00013159 76.282 By matching By MS/MS 1 1 1.1074 1.223 22.628 2 Median 0.98267 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.248 1.4353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7059500 3146200 3913300 896820 478930 417890 0 0 0 6162700 2667300 3495400 0 0 0 0 0 0 0 0 0 23730 3216 24737 125268;125269 126476;126477 126476 2 LWSLDSDEPVADIEGHTVR KDVNLASCAADGSVKLWSLDSDEPVADIEG DSDEPVADIEGHTVRVARVMWHPSGRFLGT K L W V R V 1 1 0 3 0 0 2 1 1 1 2 0 0 0 1 2 1 1 0 2 0 0 19 0 2138.028 O43172 O43172 307 325 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 2.4958E-05 44.816 By MS/MS 1 0.80834 0.82273 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80834 0.82273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7163700 3767400 3396300 0 0 0 0 0 0 7163700 3767400 3396300 0 0 0 0 0 0 0 0 0 23731 1557 24738 125270 126478 126478 1 LWSPDEEVSPEVLAK DLLMNDRSTGEKNGKLWSPDEEVSPEVLAK LWSPDEEVSPEVLAKVQAIKLLVRWLLGMK K L W A K V 1 0 0 1 0 0 3 0 0 0 2 1 0 0 2 2 0 1 0 2 0 0 15 0 1697.8512 Q29RF7;H0Y9L6 Q29RF7 821 835 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 2.3467E-05 85.288 By MS/MS 1 0.63659 0.67939 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63659 0.67939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15060000 8538300 6521500 0 0 0 0 0 0 15060000 8538300 6521500 0 0 0 0 0 0 0 0 0 23732 3003 24739 125271 126479;126480 126479 2 LWSVDHGEQSVVTAP DGRVEPYVDFAEFYRLWSVDHGEQSVVTAP LWSVDHGEQSVVTAP_______________ R L W A P - 1 0 0 1 0 1 1 1 1 0 1 0 0 0 1 2 1 1 0 3 0 0 15 0 1623.7893 Q15750 Q15750 490 504 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes yes 2 5.7243E-07 87.298 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3080300 0 0 3080300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23733 2967 24740 125272 126481 126481 1 LWTEIPTAITIK DRDPQELVTPVKFARLWTEIPTAITIKDYD FARLWTEIPTAITIKDYDSNLNASRDDKKN R L W I K D 1 0 0 0 0 0 1 0 0 3 1 1 0 0 1 0 3 1 0 0 0 0 12 0 1384.7966 Q14573 Q14573 802 813 ITPR3 Inositol 1,4,5-trisphosphate receptor type 3 yes yes 2 0.0041889 44.203 By matching By MS/MS By matching 2 1 1 1.0508 0.97565 38.827 4 Median 1.2409 1.195 33.588 2 0 Median 1.1572 1.0101 NaN 1 0 Median 0.52988 0.58759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6959900 3386400 3573500 3361500 1479400 1882100 2752100 1313900 1438200 846310 593120 253190 0 0 0 0 0 0 0 0 0 23734 2883 24741 125273;125274;125275;125276 126482 126482 1 LWTGGLDNTVR TDGASCIDISHDGTKLWTGGLDNTVRSWDL DGTKLWTGGLDNTVRSWDLREGRQLQQHDF K L W V R S 0 1 1 1 0 0 0 2 0 0 2 0 0 0 0 0 2 1 0 1 0 0 11 0 1230.6357 F5H7D6;H0YNT2;A0A0D9SES8;H0YKT5;H0YKN8;H0YL70;Q04726;H0YNI7;K7EMK7;Q04725;Q04724;Q04727;K7EJR7 F5H7D6 560 570 TLE3;TLE2;TLE1;TLE4 Transducin-like enhancer protein 3;Transducin-like enhancer protein 2;Transducin-like enhancer protein 1;Transducin-like enhancer protein 4 yes no 2 0.00075693 87.913 By MS/MS By MS/MS By matching By matching 2 1 1 3 0.96573 0.91347 33.229 7 Median 0.98784 0.93438 3.2002 2 2 Median 1.1379 0.98417 NaN 1 0 Median 0.76623 0.82153 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74765 0.85957 54.714 3 0 Median NaN NaN NaN 0 0 Median 71938000 37697000 34241000 36790000 18339000 18450000 5872700 2449000 3423800 3675900 1998000 1677900 0 0 0 25600000 14911000 10689000 0 0 0 23735 261 24742 125277;125278;125279;125280;125281;125282;125283 126483;126484;126485 126483 3 LWTLVSEQTR LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK VNLDKLWTLVSEQTRVNAAKNKTGAAPIID K L W T R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 10 0 1231.6561 E9PLL6;P46776;E9PJD9 E9PLL6 78 87 RPL27A 60S ribosomal protein L27a yes no 2 0.00014428 120.12 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 5 1 1 2 2 1.2045 1.0585 39.984 14 Median 1.1538 1.0907 6.2518 3 1 Plateau 1.2207 1.0116 63.191 5 1 Median 1.1232 1.0789 NaN 1 1 Median 1.4309 1.1817 NaN 1 0 Median 1.3711 1.4511 2.4814 2 2 Median 1.2699 1.025 1.8421 2 0 Median 183450000 82604000 100850000 76912000 36596000 40317000 21679000 9875600 11804000 18541000 8920000 9621300 1030700 443390 587290 34786000 13730000 21056000 30502000 13040000 17462000 23736 961 24743 125284;125285;125286;125287;125288;125289;125290;125291;125292;125293;125294;125295;125296;125297 126486;126487;126488;126489;126490;126491;126492;126493;126494;126495;126496 126491 11 LWTMHNAQDLQK GLINTKRKRLKYFAKLWTMHNAQDLQKWTE FAKLWTMHNAQDLQKWTEEFNMEETQTSLL K L W Q K W 1 0 1 1 0 2 0 0 1 0 2 1 1 0 0 0 1 1 0 0 0 0 12 0 1483.7242 P20585;A0A590UJW0;A0A590UJN8 P20585 1110 1121 MSH3 DNA mismatch repair protein Msh3 yes no 3 0.00029608 57.175 By matching By MS/MS 1 1 0.79484 0.76186 28.434 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58271 0.6231 NaN 1 0 Median 1.0842 0.93152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12299000 7022400 5276600 0 0 0 0 0 0 8758000 5382500 3375500 3541000 1639900 1901100 0 0 0 0 0 0 23737 2080 24744 125298;125299 126497;126498 126497 2 LWTMPISSVR ESRYSAKTKSFKKIKLWTMPISSVRFVPRD FKKIKLWTMPISSVRFVPRDVPLPVVRVAS K L W V R F 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 2 1 1 0 1 0 0 10 0 1188.6325 Q86U86;E7EVG2;H0Y5B5 Q86U86 1075 1084 PBRM1 Protein polybromo-1 yes no 2 0.00038325 79.906 By MS/MS By matching By MS/MS 1 1 1 1.0938 1.0862 14.874 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79427 0.86565 NaN 1 0 Median 1.2293 1.0862 NaN 1 0 Median 1.0938 1.1454 NaN 1 0 Median NaN NaN NaN 0 0 Median 15518000 8304400 7213400 0 0 0 0 0 0 12616000 6942400 5673500 874620 399010 475600 2027300 962960 1064300 0 0 0 23738 3273 24745 125300;125301;125302 126499;126500;126501 126500 3 LWTPPEDYRL RLDEYTQEEIDAFPRLWTPPEDYRL_____ DAFPRLWTPPEDYRL_______________ R L W R L - 0 1 0 1 0 0 1 0 0 0 2 0 0 0 2 0 1 1 1 0 0 0 10 1 1288.6452 Q9BYD1;H0YAX3 Q9BYD1 169 178 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 0.0011346 71.223 By matching By MS/MS By MS/MS 1 1 1 0.88307 0.84546 12.152 3 Median 0.83891 0.8245 NaN 1 0 Median 1.2399 1.0294 NaN 1 0 Median 0.88307 0.84546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12814000 6761000 6053200 6437000 3516000 2921000 2029100 889290 1139800 4348100 2355700 1992400 0 0 0 0 0 0 0 0 0 23739 3888 24746 125303;125304;125305 126502;126503 126502 2 LWVDEAVR QAATHTLVDPITGQRLWVDEAVRAGLVSPE DPITGQRLWVDEAVRAGLVSPELHEQLLVA R L W V R A 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 8 0 986.51853 P58107;A0A075B730 P58107 337 344 EPPK1 Epiplakin yes no 2 0.0035231 91.041 By MS/MS By MS/MS 2 1 1.7985 1.6986 34.541 3 Median 1.8436 1.7651 5.4387 2 1 Median 1.2035 0.97403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46425000 17875000 28550000 34751000 12891000 21860000 11675000 4984400 6690200 0 0 0 0 0 0 0 0 0 0 0 0 23740 2520 24747 125306;125307;125308 126504;126505;126506;126507 126504 4 LWVGGLGPNTSLAALAR NPIKIGYGKANPTTRLWVGGLGPNTSLAAL VGGLGPNTSLAALAREFDRFGSIRTIDHVK R L W A R E 3 1 1 0 0 0 0 3 0 0 4 0 0 0 1 1 1 1 0 1 0 0 17 0 1694.9468 Q8NDT2 Q8NDT2 420 436 RBM15B Putative RNA-binding protein 15B yes yes 2 0.001662 36.982 By MS/MS By matching 1 1 0.76945 0.82018 4.9281 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74099 0.79209 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.799 0.84927 NaN 1 0 Median NaN NaN NaN 0 0 Median 3067500 1685900 1381600 0 0 0 0 0 0 2238900 1228600 1010300 0 0 0 828630 457320 371310 0 0 0 23741 3424 24748 125309;125310 126508;126509 126508 2 LWVLETK SPDGKMLLSAGRTIKLWVLETKEVYRHFTG LSAGRTIKLWVLETKEVYRHFTGHATPVSS K L W T K E 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 7 0 887.51165 Q15061;C9IZK7;C9JEE7 Q15061 192 198 WDR43 WD repeat-containing protein 43 yes no 2 0.026054 53.554 By matching By matching By MS/MS By matching 1 1 3 2 1.302 1.1204 19.231 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93375 0.9913 NaN 1 0 Median 1.5829 1.4039 NaN 1 0 Median 1.3972 1.4472 17.966 3 0 Median 1.2549 1.0424 7.1341 2 0 Median 10590000 4437800 6151900 0 0 0 0 0 0 2205600 856320 1349300 246260 90445 155810 6550500 2791000 3759400 1587300 699990 887310 23742 2924 24749 125311;125312;125313;125314;125315;125316;125317 126510 126510 1 LWVPDEEVSPETMVK DLLMNDRLPGKKTTKLWVPDEEVSPETMVK LWVPDEEVSPETMVKIQAIKMMVRWLLGMK K L W V K I 0 0 0 1 0 0 3 0 0 0 1 1 1 0 2 1 1 1 0 3 0 0 15 0 1757.8546 Q9NTI5 Q9NTI5 811 825 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00034351 55.401 By matching By MS/MS By MS/MS 1 1 1 0.67522 0.67562 9.2354 3 Median 0.67522 0.67562 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72362 0.77325 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6143 0.64802 NaN 1 0 Median NaN NaN NaN 0 0 Median 15193000 8638300 6555100 1893200 1063400 829790 0 0 0 10566000 5915200 4650400 0 0 0 2734600 1659700 1074900 0 0 0 23743 4107 24750 125318;125319;125320 126511;126512;126513;126514;126515 126513 5 LWWNSSEKR SVYHMTLKDLPAMVRLWWNSSEKRVFNIVD LPAMVRLWWNSSEKRVFNIVDRFTSKYVSS R L W K R V 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 2 0 2 0 0 0 0 9 1 1204.5989 O94822 O94822 1581 1589 LTN1 E3 ubiquitin-protein ligase listerin yes yes 3 0.066544 10.232 By matching By MS/MS By matching 2 1 1 0.85546 0.85153 47.049 4 Median 1.1267 1.0913 12.61 2 0 Median NaN NaN NaN 0 0 Median 0.6847 0.72642 NaN 1 0 Median 0.44561 0.40858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15283000 7577900 7705200 9550900 4603800 4947100 0 0 0 4704800 2290600 2414200 1027500 683600 343870 0 0 0 0 0 0 23744 1727 24751 125321;125322;125323;125324 126516 126516 1 LWYNHIAYIPIQIGNLTNLER EIISFQHLHRLTCLKLWYNHIAYIPIQIGN AYIPIQIGNLTNLERLYLNRNKIEKIPTQL K L W E R L 1 1 3 0 0 1 1 1 1 4 3 0 0 0 1 0 1 1 2 0 0 0 21 0 2540.354 Q8IWT6 Q8IWT6 646 666 LRRC8A Volume-regulated anion channel subunit LRRC8A yes yes 3 0.058461 7.712 By MS/MS 1 1.0627 0.9623 NaN 1 Median NaN NaN NaN 0 0 Median 1.0627 0.9623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 919670 421950 497720 0 0 0 919670 421950 497720 0 0 0 0 0 0 0 0 0 0 0 0 23745 3328 24752 125325 126517 126517 1 LWYTLDR PELEELRNKHSARFKLWYTLDRAPEAWDYG NKHSARFKLWYTLDRAPEAWDYGQGFVNEE K L W D R A 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 7 0 965.49707 P00387 P00387 235 241 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes yes 2 0.020057 60.788 By MS/MS By MS/MS By matching 1 1 1 1.6401 1.3638 19.613 3 Median 1.1104 1.039 NaN 1 0 Median 1.6401 1.3638 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8055 1.5205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41183000 18580000 22603000 20074000 10397000 9677300 20856000 8101200 12755000 0 0 0 251930 81969 169960 0 0 0 0 0 0 23746 1816 24753 125326;125327;125328 126518;126519;126520;126521 126518 4 LYAAIIQLR EQQDNFLKRMSGMIRLYAAIIQLRWPYGNR MSGMIRLYAAIIQLRWPYGNRQEIHPHGLN R L Y L R W 2 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1059.6441 Q53GS7 Q53GS7 576 584 GLE1 Nucleoporin GLE1 yes yes 2 0.00087149 93.262 By matching By MS/MS 1 1 1.0251 1.086 20.892 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88521 0.93687 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1872 1.2589 NaN 1 0 Median NaN NaN NaN 0 0 Median 3103500 1505500 1598000 0 0 0 0 0 0 614880 293930 320950 0 0 0 2488600 1211500 1277000 0 0 0 23747 3031 24754 125329;125330 126522 126522 1 LYAGAILEVCGCK CRGCCQEEAQFETKKLYAGAILEVCGCKLG KKLYAGAILEVCGCKLGRFPQVQAFVRSDK K L Y C K L 2 0 0 0 2 0 1 2 0 1 2 1 0 0 0 0 0 0 1 1 0 0 13 0 1452.7105 A0A3B3IT39 A0A3B3IT39 85 97 yes yes 2 0.022748 29.473 By MS/MS 3 0.84688 0.71806 25.231 3 Median NaN NaN NaN 0 0 Median 0.84688 0.71806 25.231 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20253000 11128000 9124600 0 0 0 20253000 11128000 9124600 0 0 0 0 0 0 0 0 0 0 0 0 23748 432 24755 125331;125332;125333 126523 126523 1 LYAGLKDLAEER PESERISMRQSKVDKLYAGLKDLAEERRGK VDKLYAGLKDLAEERRGKLDERHRLFQLNR K L Y E R R 2 1 0 1 0 0 2 1 0 0 3 1 0 0 0 0 0 0 1 0 0 0 12 1 1376.73 Q01082;A0A087WUZ3 Q01082 1679 1690 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 4.6987E-05 88.187 By MS/MS By matching 1 1 1.1901 1.3881 8.5367 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0904 1.3068 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.299 1.4745 NaN 1 0 Median NaN NaN NaN 0 0 Median 17418000 8277300 9140700 0 0 0 0 0 0 15691000 7539400 8151800 0 0 0 1726800 737910 988880 0 0 0 23749 2681 24756 125334;125335 126524;126525 126525 2 LYAGSTVK LTPVAIQAGRLLAQRLYAGSTVKCDYENVP GRLLAQRLYAGSTVKCDYENVPTTVFTPLE R L Y V K C 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 8 0 837.45962 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9 E9PIR7 357 364 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.017569 48.561 By matching By MS/MS 1 1 1.3314 1.2191 53.855 2 Median 1.81 1.7842 NaN 1 0 Median 0.97941 0.83304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6282000 2936600 3345300 698330 258200 440130 5583700 2678500 2905200 0 0 0 0 0 0 0 0 0 0 0 0 23750 11 24757 125336;125337 126526 126526 1 LYALDVR FKLRSTWDEIFPLKKLYALDVRVNSLDPAW DEIFPLKKLYALDVRVNSLDPAWPIKPLPP K L Y V R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 7 0 848.4756 O94913;E9PKN0;E9PQ01;E9PQF9 O94913 131 137 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 2 0.021008 59.641 By MS/MS By MS/MS 1 2 1.2437 1.2384 6.635 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2464 1.2384 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1794 1.1772 8.4212 2 0 Median NaN NaN NaN 0 0 Median 116540000 52494000 64042000 0 0 0 0 0 0 21294000 9423500 11871000 0 0 0 95242000 43070000 52171000 0 0 0 23751 1736 24758 125338;125339;125340 126527;126528;126529 126527 3 LYALGLVPTR RDQFRVRASAALLDKLYALGLVPTRGSLEL ALLDKLYALGLVPTRGSLELCDFVTASSFC K L Y T R G 1 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 1 1 0 0 10 0 1101.6546 Q9NV31 Q9NV31 83 92 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00039551 78.334 By matching By MS/MS 1 2 1.2223 1.2933 16.035 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6586 1.5511 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1938 1.2071 9.7531 2 0 Median NaN NaN NaN 0 0 Median 6547200 2875600 3671600 0 0 0 0 0 0 1231100 439740 791370 0 0 0 5316100 2435900 2880200 0 0 0 23752 4122 24759 125341;125342;125343 126530 126530 1 LYAMQTGMK QEHDKRDPVVAYYCRLYAMQTGMKIDSKTP VAYYCRLYAMQTGMKIDSKTPECRKFLSKL R L Y M K I 1 0 0 0 0 1 0 1 0 0 1 1 2 0 0 0 1 0 1 0 0 0 9 0 1041.4987 Q9NP79;A0A087WY55 Q9NP79 40 48 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 2 0.013814 50.607 By MS/MS By MS/MS 1 1 7.2297 6.6209 65.316 2 Median NaN NaN NaN 0 0 Median 12.526 10.507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.1728 4.1719 NaN 1 0 Median NaN NaN NaN 0 0 Median 27167000 2309600 24857000 0 0 0 20225000 1049300 19176000 0 0 0 0 0 0 6941700 1260300 5681400 0 0 0 23753 76 24760 125344;125345 126531;126532 126531 2 LYANMFER VCQQRIRRQLAREKKLYANMFERLAEEENK QLAREKKLYANMFERLAEEENKAKAEASSG K L Y E R L 1 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 8 0 1042.4906 Q02790;H0YFG2 Q02790 410 417 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 0.0033382 98.997 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.1485 1.0851 14.686 7 Median 1.1627 1.1775 6.2378 3 0 Median 1.0198 0.87641 2.8839 2 0 Median 1.1837 1.1989 NaN 1 0 Median 1.1206 0.96391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80960000 37962000 42998000 53163000 24955000 28208000 17612000 8528100 9083600 8200300 3571800 4628500 1984700 907240 1077500 0 0 0 0 0 0 23754 2701 24761 125346;125347;125348;125349;125350;125351;125352 126533;126534;126535;126536;126537;126538;126539 126535 7 LYAQDADGCPIDIK EFTIDARAAGKGDLKLYAQDADGCPIDIKV KLYAQDADGCPIDIKVIPNGDGTFRCSYVP K L Y I K V 2 0 0 3 1 1 0 1 0 2 1 1 0 0 1 0 0 0 1 0 0 0 14 0 1577.7396 Q14315 Q14315 704 717 FLNC Filamin-C yes yes 2 0.00021536 77.379 By MS/MS 1 0.97366 0.86616 NaN 1 Median NaN NaN NaN 0 0 Median 0.97366 0.86616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15585000 7995800 7588800 0 0 0 15585000 7995800 7588800 0 0 0 0 0 0 0 0 0 0 0 0 23755 2871 24762 125353 126540;126541 126541 2 LYASHSQFIK DAGKVKWVDINDKLKLYASHSQFIKLVAEK NDKLKLYASHSQFIKLVAEKRDAHWSEDSE K L Y I K L 1 0 0 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 1 0 0 0 10 0 1192.6241 Q9BW91 Q9BW91 320 329 NUDT9 ADP-ribose pyrophosphatase, mitochondrial yes yes 2 0.034259 32.841 By MS/MS 1 2.2193 1.9161 NaN 1 Median NaN NaN NaN 0 0 Median 2.2193 1.9161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 832550 343970 488570 0 0 0 832550 343970 488570 0 0 0 0 0 0 0 0 0 0 0 0 23756 3866 24763 125354 126542 126542 1 LYASILQQK LPGHIQAVYVQNVVKLYASILQQKEQAGEA VQNVVKLYASILQQKEQAGEAEGAQAVTQL K L Y Q K E 1 0 0 0 0 2 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1062.6073 O14617;A0A2R8Y611 O14617 529 537 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.0018268 88.942 By MS/MS 1 1.3251 1.3157 NaN 1 Median 1.3251 1.3157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3925800 1520300 2405500 3925800 1520300 2405500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23757 1485 24764 125355 126543 126543 1 LYASYEK ECPGLDEVWGEEFEKLYASYEKQGRVRKVV VWGEEFEKLYASYEKQGRVRKVVKAQQLWY K L Y E K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 0 7 0 872.42798 P23921;E9PL69 P23921 370 376 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 0.016334 68.915 By MS/MS 1 1.3478 1.1779 NaN 1 Median NaN NaN NaN 0 0 Median 1.3478 1.1779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10003000 4242600 5760500 0 0 0 10003000 4242600 5760500 0 0 0 0 0 0 0 0 0 0 0 0 23758 2121 24765 125356 126544;126545 126545 2 LYAVHQEGNK LAENSGVKANEVISKLYAVHQEGNKNVGLD EVISKLYAVHQEGNKNVGLDIEAEVPAVKD K L Y N K N 1 0 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1157.5829 P50990;H7C2U0 P50990 467 476 CCT8 T-complex protein 1 subunit theta yes no 2 0.00074564 71.692 By MS/MS By matching 1 1 1.1773 1.0857 10.811 2 Median NaN NaN NaN 0 0 Median 1.1823 1.0058 NaN 1 0 Median 1.1723 1.1719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5731200 2831600 2899500 0 0 0 5432400 2702400 2730000 298770 129220 169550 0 0 0 0 0 0 0 0 0 23759 2423 24766 125357;125358 126546;126547 126547 2 LYAYHLSR LDCREAFRLLSPTERLYAYHLSRAAWYGGL LLSPTERLYAYHLSRAAWYGGLAVLLQTSP R L Y S R A 1 1 0 0 0 0 0 0 1 0 2 0 0 0 0 1 0 0 2 0 0 0 8 0 1021.5345 G3V1D3;G3V180;Q9NY33;E9PPK9;E9PKK8;E9PQF2 G3V1D3 51 58 DPP3 Dipeptidyl peptidase 3 yes no 2 0.0095557 60.59 By MS/MS 2 0.99309 0.94557 14.157 2 Median 0.99309 0.94557 14.157 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14568000 7066700 7501400 14568000 7066700 7501400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23760 1102 24767 125359;125360 126548 126548 1 LYCPVEFSK NLTEALSLYEEQLGRLYCPVEFSKEIVCVP EEQLGRLYCPVEFSKEIVCVPSYLELWVFY R L Y S K E 0 0 0 0 1 0 1 0 0 0 1 1 0 1 1 1 0 0 1 1 0 0 9 0 1141.5478 P52788 P52788 335 343 SMS Spermine synthase yes yes 2 0.017009 42.109 By MS/MS 1 1.0236 0.85141 NaN 1 Median NaN NaN NaN 0 0 Median 1.0236 0.85141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 838870 378820 460050 0 0 0 838870 378820 460050 0 0 0 0 0 0 0 0 0 0 0 0 23761 2459 24768 125361 126549;126550 126549 2 LYDAYELK GKFEKLIVALMKPSRLYDAYELKHALKGAG ALMKPSRLYDAYELKHALKGAGTNEKVLTE R L Y L K H 1 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 2 0 0 0 8 0 1013.507 P08758;D6RBL5;E9PHT9 P08758 90 97 ANXA5 Annexin A5;Annexin yes no 2 0.0057517 74.127 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1.1057 0.96975 24.86 9 Median 1.0743 0.96943 15.741 3 0 Median 1.0948 0.93468 29.714 4 0 Median 1.3522 1.302 NaN 1 0 Median 1.2754 1.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 348340000 158020000 190320000 225070000 103610000 121460000 95579000 43743000 51837000 15419000 5929100 9489800 12266000 4740000 7526400 0 0 0 0 0 0 23762 1909 24769 125362;125363;125364;125365;125366;125367;125368;125369;125370 126551;126552;126553;126554;126555;126556;126557;126558;126559 126553 9 LYDGLFK IIGIIDPECRMIGLRLYDGLFKVIPLDRDN ECRMIGLRLYDGLFKVIPLDRDNKELKAFN R L Y F K V 0 0 0 1 0 0 0 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 7 0 854.4538 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8 Q16531 135 141 DDB1 DNA damage-binding protein 1 yes no 2 0.014424 74.439 By MS/MS By MS/MS By matching By matching 3 6 3 1 1.0082 1.121 25.064 13 Median 1.1608 1.1465 0.40664 3 0 Median NaN NaN NaN 0 0 Median 0.84062 0.89879 12.489 6 0 Median 1.9807 1.6663 3.6788 3 0 Plateau 1.0082 1.0557 NaN 1 0 Median NaN NaN NaN 0 0 Median 49260000 24022000 25238000 15282000 6934400 8348000 0 0 0 31327000 16065000 15262000 1527400 505960 1021400 1123200 516480 606710 0 0 0 23763 2985 24770 125371;125372;125373;125374;125375;125376;125377;125378;125379;125380;125381;125382;125383 126560;126561;126562;126563;126564;126565;126566;126567;126568;126569 126566 10 LYDIDVAK DVKANKHQIKQAVKKLYDIDVAKVNTLIRP IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K L Y A K V 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 935.4964 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 118 125 RPL23A 60S ribosomal protein L23a yes no 2 0.0035841 89.142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 1.2478 1.1201 22.359 12 Median 1.1413 1.0317 0.48544 2 0 Median 1.2524 1.0755 19.139 3 0 Median 1.2432 1.1656 NaN 1 0 Median 1.2703 1.0441 30.705 2 0 Median 1.4433 1.5617 37.399 2 0 Median 1.399 1.1495 9.2993 2 0 Median 226880000 98517000 128360000 118580000 54826000 63758000 36319000 14776000 21543000 23409000 6177800 17231000 20373000 9724600 10648000 15800000 7368700 8431700 12391000 5644500 6746700 23764 544 24771 125384;125385;125386;125387;125388;125389;125390;125391;125392;125393;125394;125395;125396;125397 126570;126571;126572;126573;126574;126575;126576;126577;126578;126579;126580;126581;126582 126577 13 LYDLNHNEIGELIR EVVKKIEKKNFPFERLYDLNHNEIGELIRM RLYDLNHNEIGELIRMPKMGKTIHKYVHLF R L Y I R M 0 1 2 1 0 0 2 1 1 2 3 0 0 0 0 0 0 0 1 0 0 0 14 0 1697.8737 O75643;A0A494C1A5 O75643 1153 1166 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 3.1402E-06 126.67 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 5 2 2 1.1687 1.1051 10.593 12 Median 1.1687 1.1175 6.123 2 0 Median 1.2606 1.071 NaN 1 0 Median 1.0353 1.093 14.101 5 0 Median 1.2788 1.1229 0.6937 2 0 Median 1.1615 1.2159 16.014 2 0 Median NaN NaN NaN 0 0 Median 129190000 60087000 69106000 31354000 14407000 16947000 3459800 1530600 1929200 81581000 38351000 43230000 2367200 1028900 1338400 10431000 4770000 5661200 0 0 0 23765 1688 24772 125398;125399;125400;125401;125402;125403;125404;125405;125406;125407;125408;125409 126583;126584;126585;126586;126587;126588;126589;126590;126591;126592;126593;126594;126595;126596;126597 126584 15 LYDNLLEQNLIR AELRDDPIISTHLAKLYDNLLEQNLIRVIE LAKLYDNLLEQNLIRVIEPFSRVQIEHISS K L Y I R V 0 1 2 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 1 0 0 0 12 0 1502.8093 O00231 O00231 326 337 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 2.4855E-10 142.83 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 1.3257 1.2559 18.427 10 Median 1.1422 1.1325 22.04 3 0 Median 1.1879 1.034 12.213 3 0 Median 1.4152 1.4583 11.366 2 1 Median NaN NaN NaN 0 0 Median 1.3619 1.3896 7.3985 2 0 Median NaN NaN NaN 0 0 Median 74747000 34004000 40743000 6627300 3344400 3282900 37826000 17869000 19957000 26933000 11489000 15444000 0 0 0 3361000 1301300 2059600 0 0 0 23766 1448 24773 125410;125411;125412;125413;125414;125415;125416;125417;125418;125419 126598;126599;126600;126601;126602;126603;126604 126600 7 LYDPASGTISLDGHDIR PSGSGKSTVLSLLLRLYDPASGTISLDGHD DPASGTISLDGHDIRQLNPVWLRSKIGTVS R L Y I R Q 1 1 0 3 0 0 0 2 1 2 2 0 0 0 1 2 1 0 1 0 0 0 17 0 1828.8955 Q9NRK6 Q9NRK6 543 559 ABCB10 ATP-binding cassette sub-family B member 10, mitochondrial yes yes 3 0.025698 15.155 By matching By MS/MS 1 1 1.1617 1.0668 29.261 2 Median 0.87538 0.86745 NaN 1 0 Median 1.5418 1.3121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10092000 4967900 5123900 7273500 3629600 3643900 2818300 1338400 1479900 0 0 0 0 0 0 0 0 0 0 0 0 23767 4083 24774 125420;125421 126605 126605 1 LYDQLLQSYQQK QQLNASLQLAEKFSRLYDQLLQSYQQKMLN FSRLYDQLLQSYQQKMLNTSALLKQLNEQF R L Y Q K M 0 0 0 1 0 4 0 0 0 0 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1525.7777 CON__P17697 CON__P17697 332 343 yes yes 2 0.050488 43.635 By MS/MS 1 0.15389 0.15313 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15389 0.15313 NaN 1 1 Median NaN NaN NaN 0 0 Median 4514000 3989300 524680 0 0 0 0 0 0 0 0 0 0 0 0 4514000 3989300 524680 0 0 0 + 23768 759 24775 125422 126606 126606 1 LYDVPANSMR TSQFLLVSSWDTSVRLYDVPANSMRLKYQH DTSVRLYDVPANSMRLKYQHTGAVLDCAFY R L Y M R L 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 10 0 1164.5597 O43684;J3QT28;J3QSX4 O43684 41 50 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.00036818 122.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 6 5 1 0.93144 0.85706 29.485 17 Median 0.82113 0.81634 5.3298 2 2 Median 1.0371 0.82692 10.835 3 1 Plateau 0.89054 0.94663 10.172 6 0 Median 0.9665 0.82805 48.581 5 0 Median NaN NaN NaN 0 0 Median 1.2925 0.99714 NaN 1 0 Median 168360000 85191000 83170000 16791000 9163200 7628000 8515800 4010000 4505700 104780000 53128000 51650000 37773000 18629000 19144000 0 0 0 501930 260450 241480 23769 1357 24776;24777 125423;125424;125425;125426;125427;125428;125429;125430;125431;125432;125433;125434;125435;125436;125437;125438;125439 126607;126608;126609;126610;126611;126612;126613;126614;126615;126616;126617;126618;126619;126620;126621;126622;126623;126624 126611 445 18 LYDWGLR YPQQAIVFAQVSGERLYDWGLRGYIVIEDL FAQVSGERLYDWGLRGYIVIEDLWKENFQK R L Y L R G 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 1 1 0 0 0 7 0 921.47085 H7C1U8;Q9BUR5;A0A0J9YWW6 H7C1U8 146 152 APOO Apolipoprotein O yes no 2 0.017766 64.776 By MS/MS By matching By matching By matching 1 1 1 1 1.5535 1.2549 10.913 4 Median 1.0732 1.0265 NaN 1 0 Median 1.554 1.2891 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5802 1.296 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5531 1.2216 NaN 1 0 Median 32136000 14627000 17509000 27306000 12679000 14627000 4137800 1706000 2431800 0 0 0 384750 132810 251940 0 0 0 307170 108770 198400 23770 1261 24778 125440;125441;125442;125443 126625 126625 1 LYEALTPVH DDESLREMVELAAQRLYEALTPVH______ ELAAQRLYEALTPVH_______________ R L Y V H - 1 0 0 0 0 0 1 0 1 0 2 0 0 0 1 0 1 0 1 1 0 0 9 0 1041.5495 Q9UKF6;G5E9W3 Q9UKF6 676 684 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.0001128 117.7 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29185000 0 0 0 0 0 0 0 0 27255000 0 0 1929600 0 0 0 0 0 0 0 0 23771 4309 24779 125444;125445 126626;126627 126626 2 LYEGAFLPSSQWPR NLAKEAELPLLDLMKLYEGAFLPSSQWPRP KLYEGAFLPSSQWPRPKPDGEDTSGEEDAD K L Y P R P 1 1 0 0 0 1 1 1 0 0 2 0 0 1 2 2 0 1 1 0 0 0 14 0 1649.8202 Q96L91 Q96L91 989 1002 EP400 E1A-binding protein p400 yes yes 2 6.0764E-08 102.52 By MS/MS 2 0.69855 0.76633 10.406 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69855 0.76633 10.406 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5275600 2983900 2291800 0 0 0 0 0 0 5275600 2983900 2291800 0 0 0 0 0 0 0 0 0 23772 3700 24780 125446;125447 126628;126629 126628 2 LYEIGAGTSEVR YINDFPMGRFLRDAKLYEIGAGTSEVRRLV DAKLYEIGAGTSEVRRLVIGRAFNADFH__ K L Y V R R 1 1 0 0 0 0 2 2 0 1 1 0 0 0 0 1 1 0 1 1 0 0 12 0 1293.6565 A0A0S2Z4K7;A0A0A0MT83;P26440 A0A0S2Z4K7 369 380 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2 0.0001195 127.4 By MS/MS By MS/MS 1 1 1.0562 0.98521 16.476 2 Median 0.8796 0.87687 NaN 1 0 Median 1.2684 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20831000 9144900 11686000 11916000 5029500 6886300 8915500 4115400 4800100 0 0 0 0 0 0 0 0 0 0 0 0 23773 187 24781 125448;125449 126630;126631;126632;126633 126631 4 LYEIGAGTSEVRR YINDFPMGRFLRDAKLYEIGAGTSEVRRLV AKLYEIGAGTSEVRRLVIGRAFNADFH___ K L Y R R L 1 2 0 0 0 0 2 2 0 1 1 0 0 0 0 1 1 0 1 1 0 0 13 1 1449.7576 A0A0S2Z4K7;A0A0A0MT83;P26440 A0A0S2Z4K7 369 381 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2;3 4.5667E-12 115.14 By MS/MS 2 0.99007 1.0417 23.646 2 Median 0.99007 1.0417 23.646 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17534000 7817500 9716900 17534000 7817500 9716900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23774 187 24782 125450;125451 126634;126635 126635 1 LYEKENPDIYK DKRKKLRETFERILRLYEKENPDIYKELRK RILRLYEKENPDIYKELRKLEVEYEQKRAQ R L Y Y K E 0 0 1 1 0 0 2 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 11 1 1410.7031 Q9Y2W2;F5H5G4 Q9Y2W2 95 105 WBP11 WW domain-binding protein 11 yes no 3 0.032424 22.232 By matching By MS/MS 1 1 0.76878 0.8371 35.846 2 Median 0.62631 0.64968 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94365 1.0786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6229000 3345400 2883600 1018400 642420 375930 0 0 0 5210600 2702900 2507700 0 0 0 0 0 0 0 0 0 23775 4394 24783 125452;125453 126636 126636 1 LYELDGLR EDAFHFVSYVPVNGRLYELDGLREGPIDLG YVPVNGRLYELDGLREGPIDLGACNQDDWI R L Y L R E 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 8 0 977.5182 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0;H0Y6Y4;H0Y4E0 Q5LJA5 175 182 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.005111 77.674 By MS/MS 1 1.1458 1.1357 NaN 1 Median 1.1458 1.1357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5992200 2823700 3168500 5992200 2823700 3168500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23776 3064 24784 125454 126637 126637 1 LYELGGEPER KKSSSSTTTNEKITKLYELGGEPERKMWVD EKITKLYELGGEPERKMWVDRYLAFTEEKA K L Y E R K 0 1 0 0 0 0 3 2 0 0 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1161.5666 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1011 1020 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.0056602 65.305 By MS/MS 1 1.0244 0.89867 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0244 0.89867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1653800 839760 814010 0 0 0 0 0 0 0 0 0 1653800 839760 814010 0 0 0 0 0 0 23777 1480 24785 125455 126638 126638 1 LYELGGEPERK KKSSSSTTTNEKITKLYELGGEPERKMWVD KITKLYELGGEPERKMWVDRYLAFTEEKAM K L Y R K M 0 1 0 0 0 0 3 2 0 0 2 1 0 0 1 0 0 0 1 0 0 0 11 1 1289.6616 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1011 1021 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.013764 36.303 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23778 1480 24786 125456 126639 126639 1 LYELIITR MRMAIESAGFKLNKKLYELIITRYSEPDLA GFKLNKKLYELIITRYSEPDLAVDFDNFVC K L Y T R Y 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1019.6015 P07384 P07384 655 662 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0035922 86.833 By MS/MS By matching By MS/MS By matching 2 3 1 1 1.5428 1.4062 21.337 7 Median 1.2751 1.2179 27.104 2 0 Median 1.6255 1.4062 5.3622 3 0 Median 0.85305 0.9001 NaN 1 0 Median 1.8142 1.5306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23092000 9932500 13160000 11668000 5069000 6598500 7354500 2713300 4641200 3734800 2041300 1693500 335590 108930 226660 0 0 0 0 0 0 23779 1886 24787 125457;125458;125459;125460;125461;125462;125463 126640;126641;126642;126643 126641 4 LYENFISEFEHR FVQDPCFAQGDGLIKLYENFISEFEHRVNP LIKLYENFISEFEHRVNPLSLVEIILHVVR K L Y H R V 0 1 1 0 0 0 3 0 1 1 1 0 0 2 0 1 0 0 1 0 0 0 12 0 1582.7416 Q9UNM6;A0A087WUL9;J3KNQ3;E9PPD2;E9PQG3 Q9UNM6 59 70 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2;3 1.963E-07 121.83 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.19 1.0588 26.419 7 Median 1.19 1.1848 7.7795 3 2 Plateau 1.2196 1.0588 NaN 1 0 Median 1.2246 1.2538 25.598 2 0 Median NaN NaN NaN 0 0 Median 2.0007 2.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median 34705000 15940000 18764000 24657000 11724000 12933000 4553100 1970600 2582400 5023900 2094100 2929800 0 0 0 470430 151990 318440 0 0 0 23780 4345 24788 125464;125465;125466;125467;125468;125469;125470 126644;126645;126646;126647;126648;126649 126647 6 LYEPDQLQELK RQELDAFLAQALSPKLYEPDQLQELKIENL LSPKLYEPDQLQELKIENLDPRGIQLSALF K L Y L K I 0 0 0 1 0 2 2 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 11 0 1374.7031 Q9NZB2;A0A0C4DG79 Q9NZB2 748 758 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.0037428 73.985 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23781 4186 24789 125471 126650 126650 1 LYEQHHVVQDMLVPMK KISLLKLTQGETLRKLYEQHHVVQDMLVPM YEQHHVVQDMLVPMKCLQQALHTFQNDIHV K L Y M K C 0 0 0 1 0 2 1 0 2 0 2 1 2 0 1 0 0 0 1 3 0 0 16 0 1965.9805 A0A0A0MTI1;Q15392 A0A0A0MTI1 389 404 DHCR24 Delta(24)-sterol reductase yes no 3 3.5835E-05 52.522 By MS/MS 2 1.171 1.0393 2.8837 2 Median NaN NaN NaN 0 0 Median 1.171 1.0393 2.8837 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11160000 4621800 6538100 0 0 0 11160000 4621800 6538100 0 0 0 0 0 0 0 0 0 0 0 0 23782 192 24790 125472;125473 126651 126651 1 LYEQILAENEK YSSRLEKDDSTDFKKLYEQILAENEKLKAQ DFKKLYEQILAENEKLKAQLHDTNMELTDL K L Y E K L 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1348.6874 O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974 935 945 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 0.00091145 85.377 By MS/MS 1 0.96329 0.82406 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96329 0.82406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748900 1395800 1353100 0 0 0 0 0 0 0 0 0 2748900 1395800 1353100 0 0 0 0 0 0 23783 1508 24791 125474 126652 126652 1 LYEQILAENEKLK YSSRLEKDDSTDFKKLYEQILAENEKLKAQ KKLYEQILAENEKLKAQLHDTNMELTDLKL K L Y L K A 1 0 1 0 0 1 3 0 0 1 3 2 0 0 0 0 0 0 1 0 0 0 13 1 1589.8665 O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974 935 947 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 0.0023732 37.594 By matching By MS/MS 2 1 0.94277 1.0895 17.752 3 Median 0.95841 1.026 24.622 2 0 Median NaN NaN NaN 0 0 Median 0.94277 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20566000 9829400 10737000 10469000 5243900 5225500 0 0 0 10097000 4585600 5511400 0 0 0 0 0 0 0 0 0 23784 1508 24792 125475;125476;125477 126653 126653 1 LYEQLSGK AGTCYQAEWDDYVPKLYEQLSGK_______ WDDYVPKLYEQLSGK_______________ K L Y G K - 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 936.49165 P30086 P30086 180 187 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 0.002327 138.9 By MS/MS By MS/MS By MS/MS 2 3 1 1.1724 1.0507 6.3275 6 Median 1.0973 1.0081 3.2804 2 0 Median 1.3385 1.1192 6.087 3 0 Median 1.1297 1.0588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106910000 49486000 57425000 67481000 31952000 35529000 26566000 11570000 14996000 12865000 5965200 6900100 0 0 0 0 0 0 0 0 0 23785 2188 24793 125478;125479;125480;125481;125482;125483 126654;126655;126656;126657;126658;126659;126660;126661;126662;126663;126664;126665 126661 12 LYESLLVGSLPDMNK LWDTANTVKEKFGRKLYESLLVGSLPDMNK LYESLLVGSLPDMNKMLDKEDFTMMKRAIF K L Y N K M 0 0 1 1 0 0 1 1 0 0 4 1 1 0 1 2 0 0 1 1 0 0 15 0 1677.8648 P13807 P13807 404 418 GYS1 Glycogen [starch] synthase, muscle yes yes 2 0.043672 23.851 By MS/MS By matching 1 1 0.81081 0.76784 19.976 2 Median 0.66345 0.66669 NaN 1 0 Median 0.99089 0.88432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2560800 1508000 1052800 1345700 869160 476530 1215100 638830 576250 0 0 0 0 0 0 0 0 0 0 0 0 23786 1997 24794 125484;125485 126666 126666 1 LYETSYR QWVQLVDLTEIYGERLYETSYRLSKNEAPE LTEIYGERLYETSYRLSKNEAPEGNLGDFA R L Y Y R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 7 0 930.4447 Q9UKN8 Q9UKN8 216 222 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.03302 48.504 By MS/MS By matching 1 1 1.1102 1.0609 7.2251 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0433 1.1166 NaN 1 0 Median 1.1813 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2361500 1092800 1268800 0 0 0 0 0 0 1778900 887580 891290 582670 205220 377460 0 0 0 0 0 0 23787 4314 24795 125486;125487 126667 126667 1 LYEWTTEK EFNGKLLASINSTVRLYEWTTEKELRTECN SINSTVRLYEWTTEKELRTECNHYNNIMAL R L Y E K E 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 8 0 1068.5128 Q16531;F5GY55 Q16531 890 897 DDB1 DNA damage-binding protein 1 yes no 2 2.3763E-05 116.88 By MS/MS By MS/MS 1 1 1.2577 1.2107 21.708 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96708 1.0384 NaN 1 1 Median 1.6357 1.4116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11881000 5765600 6115300 0 0 0 0 0 0 7301500 3947300 3354200 4579300 1818300 2761000 0 0 0 0 0 0 23788 2985 24796 125488;125489 126668;126669 126669 2 LYEWTTEKELR EFNGKLLASINSTVRLYEWTTEKELRTECN STVRLYEWTTEKELRTECNHYNNIMALYLK R L Y L R T 0 1 0 0 0 0 3 0 0 0 2 1 0 0 0 0 2 1 1 0 0 0 11 1 1466.7405 Q16531;F5GY55 Q16531 890 900 DDB1 DNA damage-binding protein 1 yes no 3 0.00025323 83.397 By matching By MS/MS By matching By matching By matching 1 3 1 1 1 0.89364 0.84685 18.114 7 Median 0.78862 0.73564 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89364 1.0131 22.693 3 1 Plateau 1.0989 0.90765 NaN 1 0 Median 1.0663 1.0943 NaN 1 0 Median 0.98917 0.81816 NaN 1 0 Median 47195000 23015000 24180000 10692000 5069600 5622300 0 0 0 27064000 13824000 13240000 1075300 401040 674250 3085600 1441500 1644200 5278100 2279000 2999100 23789 2985 24797 125490;125491;125492;125493;125494;125495;125496 126670;126671 126670 2 LYFKPIGDPVFAR LPDWKRSLPHFRNGKLYFKPIGDPVFARDL GKLYFKPIGDPVFARDLLTFPDNVEHCETV K L Y A R D 1 1 0 1 0 0 0 1 0 1 1 1 0 2 2 0 0 0 1 1 0 0 13 1 1521.8344 A6NHR9;J3KTL8;A0A2R8YCU7 A6NHR9 1799 1811 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0069206 30.059 By matching By MS/MS By matching 1 1 1 0.75958 0.8471 7.2617 3 Median NaN NaN NaN 0 0 Median 0.87427 0.8471 NaN 1 0 Median 0.75958 0.91048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69563 0.7874 NaN 1 0 Median NaN NaN NaN 0 0 Median 13569000 7707300 5862000 0 0 0 481450 210620 270830 12012000 6808700 5203000 0 0 0 1076100 687970 388100 0 0 0 23790 518 24798 125497;125498;125499 126672 126672 1 LYGAQFHPEVGLTENGK RSGNIVAGIANESKKLYGAQFHPEVGLTEN GAQFHPEVGLTENGKVILKNFLYDIAGCSG K L Y G K V 1 0 1 0 0 1 2 3 1 0 2 1 0 1 1 0 1 0 1 1 0 0 17 0 1858.9214 P49915 P49915 184 200 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 0.0028889 41.695 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0762 0.90304 24.512 5 Median 0.87252 0.78528 NaN 1 1 Median 0.90128 0.77782 21.111 2 0 Median 1.2185 1.22 NaN 1 1 Median 1.2941 1.1087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47237000 22501000 24736000 15825000 8145100 7679800 10328000 4828100 5499900 19834000 8946700 10887000 1250800 581440 669330 0 0 0 0 0 0 23791 2405 24799 125500;125501;125502;125503;125504 126673;126674;126675;126676 126674 4 LYGDADYLEER KRRTLFQTKNSVMRKLYGDADYLEERHRHR VMRKLYGDADYLEERHRHRFEVNPVWKKCL K L Y E R H 1 1 0 2 0 0 2 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 11 0 1342.6041 P17812;A0A3B3IRI2;B4E1E0 P17812 467 477 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.0054939 45.997 By MS/MS 1 1.3964 1.2106 NaN 1 Median NaN NaN NaN 0 0 Median 1.3964 1.2106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4169100 1767200 2401900 0 0 0 4169100 1767200 2401900 0 0 0 0 0 0 0 0 0 0 0 0 23792 2046 24800 125505 126677;126678 126678 2 LYGDDALDNALQTFIK KAALSGSYVNFGVFRLYGDDALDNALQTFI YGDDALDNALQTFIKLLLSIPHSDLLDYPK R L Y I K L 2 0 1 3 0 1 0 1 0 1 3 1 0 1 0 0 1 0 1 0 0 0 16 0 1795.8992 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 856 871 XPO7 Exportin-7 yes no 2 0.00013333 53.967 By MS/MS By matching By matching 1 1 1 1.1844 1.2565 18.53 3 Plateau NaN NaN NaN 0 0 Median 1.6607 1.4664 NaN 1 0 Median 1.0359 1.0766 NaN 1 0 Median 1.1844 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3519500 1491200 2028300 0 0 0 2337700 949020 1388700 1106100 511100 595020 75709 31102 44607 0 0 0 0 0 0 23793 885 24801 125506;125507;125508 126679 126679 1 LYGEFADPFK DAVSQLDSELMDITKLYGEFADPFKLAECK MDITKLYGEFADPFKLAECKLAIIHCAGYS K L Y F K L 1 0 0 1 0 0 1 1 0 0 1 1 0 2 1 0 0 0 1 0 0 0 10 0 1185.5706 O75694;E9PF10 O75694 1188 1197 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.010523 43.808 By MS/MS By matching 1 1 1.067 1.0214 4.0532 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9711 1.0511 NaN 1 0 Median 1.1723 0.99259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5854800 3105100 2749700 0 0 0 0 0 0 5338100 2864600 2473500 516670 240520 276150 0 0 0 0 0 0 23794 1692 24802 125509;125510 126680;126681 126681 2 LYGFTENR VLVAEEEAARVALRKLYGFTENRRPWNYSK ARVALRKLYGFTENRRPWNYSKPKETLRAE K L Y N R R 0 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 998.48214 Q9H9J2 Q9H9J2 304 311 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 2 0.0089543 79.116 By MS/MS By MS/MS By MS/MS 1 1 1 1.5344 1.5257 9.9567 3 Plateau 1.4819 1.3831 NaN 1 1 Median 1.8757 1.5652 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5344 1.2854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12792000 4902000 7890100 7470100 2688400 4781700 4299500 1806200 2493300 0 0 0 1022600 407460 615120 0 0 0 0 0 0 23795 4000 24803 125511;125512;125513 126682;126683;126684 126682 3 LYGNDFSQTTISR KLGFTQGDVGLAMGKLYGNDFSQTTISRFE GKLYGNDFSQTTISRFEALNLSFKNMCKLK K L Y S R F 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 2 2 0 1 0 0 0 13 0 1500.7209 P14859;A0A0C4DG88;A0A0A0MT46;Q9UKI9;H0YLC5;U3KQ96;U3KQN1;H0YNW1;H0YLL6;B5ME60;H0YKT2;P09086 P14859 316 328 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain protein;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2 yes no 2 5.0766E-22 193.52 By MS/MS By MS/MS 2 1 1.0796 1.1408 35.745 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78464 0.8128 47.94 2 1 Median 1.1477 0.98917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59453000 31935000 27518000 0 0 0 0 0 0 49976000 27409000 22568000 9476300 4526000 4950300 0 0 0 0 0 0 23796 2010 24804 125514;125515;125516 126685;126686;126687;126688 126686 4 LYGPSSVSFADDFVR SNSTARNVTWKLGSRLYGPSSVSFADDFVR LYGPSSVSFADDFVRSSKQHYNCEHSKINF R L Y V R S 1 1 0 2 0 0 0 1 0 0 1 0 0 2 1 3 0 0 1 2 0 0 15 0 1658.794 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PQ34 P50454 134 148 SERPINH1 Serpin H1 yes no 2 5.196E-10 108.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 1.2486 1.1265 16.03 12 Median 0.94357 0.91551 3.007 2 0 Median 1.3046 1.1148 12.759 3 0 Median 1.0481 1.0765 18.349 2 0 Median 1.2828 1.0977 5.1324 2 0 Median 1.3261 1.3625 2.4821 3 0 Median NaN NaN NaN 0 0 Median 85088000 40584000 44505000 22169000 11196000 10973000 9158600 4109800 5048800 41718000 20144000 21573000 2950600 1332700 1617900 9092600 3801000 5291600 0 0 0 23797 2414 24805 125517;125518;125519;125520;125521;125522;125523;125524;125525;125526;125527;125528 126689;126690;126691;126692;126693;126694;126695;126696;126697;126698;126699;126700;126701;126702;126703 126691 13 LYGPTNFAPIINHVAR QGIVDAYRQALPQVRLYGPTNFAPIINHVA YGPTNFAPIINHVARFAAQAAHQGTASQYF R L Y A R F 2 1 2 0 0 0 0 1 1 2 1 0 0 1 2 0 1 0 1 1 0 0 16 0 1781.9577 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX45;H0Y524 Q99829 385 400 CPNE1 Copine-1 yes no 3 2.106E-05 75.669 By MS/MS By MS/MS By MS/MS 3 1 1 0.81541 0.78091 7.9776 5 Median 0.82675 0.78091 2.5178 3 0 Plateau 1.0807 0.93521 NaN 1 0 Median 0.76184 0.77807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39065000 20605000 18460000 25563000 13654000 11909000 6978700 3359300 3619400 6522400 3591300 2931100 0 0 0 0 0 0 0 0 0 23798 559 24806 125529;125530;125531;125532;125533 126704;126705;126706;126707;126708;126709 126705 6 LYGPTNFSPIINHVAR QGIVEAYRSCLPQIKLYGPTNFSPIINHVA YGPTNFSPIINHVARFAAAATQQQTASQYF K L Y A R F 1 1 2 0 0 0 0 1 1 2 1 0 0 1 2 1 1 0 1 1 0 0 16 0 1797.9526 O75131 O75131 391 406 CPNE3 Copine-3 yes yes 3 3.7307E-05 59.248 By MS/MS By matching By MS/MS By matching 3 2 1 1 0.78509 0.71013 9.5963 7 Median 0.69596 0.66078 11.095 3 0 Median 0.89456 0.76386 10.314 2 0 Median 0.71212 0.71007 NaN 1 0 Median 0.83033 0.72294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47636000 27874000 19763000 24611000 15113000 9497800 7477000 3852700 3624300 15058000 8622200 6435500 490430 285580 204850 0 0 0 0 0 0 23799 1645 24807 125534;125535;125536;125537;125538;125539;125540 126710;126711;126712;126713 126710 4 LYGSAGPPPTGEEDTAEKDEL KKKELEEIVQPIISKLYGSAGPPPTGEEDT PPPTGEEDTAEKDEL_______________ K L Y E L - 2 0 0 2 0 0 4 3 0 0 2 1 0 0 3 1 2 0 1 0 0 0 21 1 2174.9855 P11021 P11021 634 654 HSPA5 78 kDa glucose-regulated protein yes yes 2 1.7243E-16 101.43 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 1 0.70805 0.67604 9.3206 9 Median 0.64446 0.59105 9.9564 2 0 Median 0.74981 0.65349 4.798 2 0 Median 0.63616 0.66691 NaN 1 0 Median 0.85054 0.73374 1.9657 2 0 Median 0.68594 0.7074 NaN 1 0 Median 0.85479 0.71769 NaN 1 0 Median 48971000 28702000 20269000 32885000 19772000 13113000 5715300 3161900 2553400 5592500 3046300 2546200 2297900 1297800 1000100 2182800 1271000 911760 297390 153460 143930 23800 1948 24808 125541;125542;125543;125544;125545;125546;125547;125548;125549 126714;126715;126716;126717;126718;126719;126720;126721;126722 126716 9 LYGSGDQEAWQK YDDLKQKKKMAVSAKLYGSGDQEAWQKGVL SAKLYGSGDQEAWQKGVLFASGQNLARQLM K L Y Q K G 1 0 0 1 0 2 1 2 0 0 1 1 0 0 0 1 0 1 1 0 0 0 12 0 1380.631 P28838;H0Y9Q1 P28838 177 188 LAP3 Cytosol aminopeptidase yes no 2 7.7439E-06 109.29 By MS/MS By MS/MS 1 1 0.3895 0.34351 11.674 2 Median 0.34394 0.31629 NaN 1 1 Median 0.44108 0.37307 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64523000 49628000 14895000 40316000 31366000 8950100 24207000 18262000 5944800 0 0 0 0 0 0 0 0 0 0 0 0 23801 2167 24809 125550;125551 126723;126724 126723 2 LYHDIAQQAFK RQCLDLLRNNSRVERLYHDIAQQAFKFCLQ RVERLYHDIAQQAFKFCLQYTRKAEFRKLC R L Y F K F 2 0 0 1 0 2 0 0 1 1 1 1 0 1 0 0 0 0 1 0 0 0 11 0 1332.6826 Q14152 Q14152 173 183 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 4.9658E-05 150.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 1 1.0998 1.0466 11.144 9 Median 1.1077 1.0597 7.159 2 0 Median 1.1944 1.0577 1.4918 2 0 Median 1.0998 1.1828 NaN 1 0 Median 1.183 1.0685 NaN 1 0 Median 0.89661 0.93116 2.7543 2 0 Median 0.9562 0.82056 NaN 1 0 Median 143220000 68360000 74858000 86869000 41577000 45291000 40638000 18992000 21645000 6864800 3592300 3272400 3265900 1373300 1892600 4649600 2406000 2243500 930620 418340 512280 23802 2860 24810 125552;125553;125554;125555;125556;125557;125558;125559;125560 126725;126726;126727;126728;126729;126730;126731;126732;126733 126725 9 LYHDPNVNGGTELEPVEGNPYR RCGQAWRAATLEGWKLYHDPNVNGGTELEP NGGTELEPVEGNPYRRIWKISCWRMAEDEL K L Y Y R R 0 1 3 1 0 0 3 3 1 0 2 0 0 0 3 0 1 0 2 2 0 0 22 0 2469.1561 P57740 P57740 383 404 NUP107 Nuclear pore complex protein Nup107 yes yes 3 1.5818E-23 114.46 By MS/MS By MS/MS 1 2 0.75497 0.64011 4.6263 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59111 0.62526 NaN 1 0 Median 0.77675 0.66151 4.6506 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36109000 20851000 15258000 0 0 0 0 0 0 27122000 16084000 11037000 8986700 4766100 4220600 0 0 0 0 0 0 23803 2518 24811 125561;125562;125563 126734;126735;126736;126737 126734 4 LYHDPNVNGGTELEPVEGNPYRR RCGQAWRAATLEGWKLYHDPNVNGGTELEP GGTELEPVEGNPYRRIWKISCWRMAEDELF K L Y R R I 0 2 3 1 0 0 3 3 1 0 2 0 0 0 3 0 1 0 2 2 0 0 23 1 2625.2572 P57740 P57740 383 405 NUP107 Nuclear pore complex protein Nup107 yes yes 4 3.7018E-08 47.808 By MS/MS 1 0.47248 0.54595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47248 0.54595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11650000 7390900 4259200 0 0 0 0 0 0 11650000 7390900 4259200 0 0 0 0 0 0 0 0 0 23804 2518 24812 125564 126738 126738 1 LYHEADKTYMLR FLRIDGVLIRMNDTRLYHEADKTYMLREYT DTRLYHEADKTYMLREYTSRESKISSLMHV R L Y L R E 1 1 0 1 0 0 1 0 1 0 2 1 1 0 0 0 1 0 2 0 0 0 12 1 1538.7551 O75663 O75663 201 212 TIPRL TIP41-like protein yes yes 2 0.0050442 81.338 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23805 1689 24813 125565 126739 126739 1 LYHILTPVPPEELR CLGFGICRGIDMEKRLYHILTPVPPEELRT RLYHILTPVPPEELRTVNCLLVGAIAIPHC R L Y L R T 0 1 0 0 0 0 2 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 14 0 1675.9297 Q5SY16 Q5SY16 620 633 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 0.0031113 33.204 By MS/MS By matching By matching By matching 1 1 1 2 0.72727 0.67841 8.2915 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63857 0.6697 NaN 1 0 Median 0.90103 0.74514 NaN 1 0 Median 0.70695 0.75187 NaN 1 0 Median 0.81043 0.64621 6.8768 2 0 Median 8951500 4963100 3988400 0 0 0 0 0 0 5021900 2917100 2104800 145030 50437 94598 1959500 1172900 786550 1825100 822710 1002400 23806 3077 24814 125566;125567;125568;125569;125570 126740;126741 126741 2 LYHNEVEIEK KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL LQLFKLYHNEVEIEKLNKELASKNKEIEKD K L Y E K L 0 0 1 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1272.635 Q14683;G8JLG1;H0Y7K8 Q14683 228 237 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 9.1656E-06 153.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 5 0.90967 0.93588 58.613 17 Median 1.2879 1.2388 18.911 2 0 Median 1.0603 0.89937 16.043 2 0 Median 0.859 0.92004 7.5062 2 0 Median 1.2111 1.0881 20.74 3 0 Plateau 0.88058 0.9245 12.162 3 0 Plateau 0.81074 0.67548 98.962 5 3 Median 161450000 85755000 75693000 9064000 3718000 5346000 15074000 6832300 8241900 24967000 13255000 11712000 15244000 6663100 8580700 65897000 36269000 29627000 31202000 19017000 12185000 23807 2889 24815 125571;125572;125573;125574;125575;125576;125577;125578;125579;125580;125581;125582;125583;125584;125585;125586;125587 126742;126743;126744;126745;126746;126747;126748;126749;126750;126751;126752;126753;126754;126755;126756;126757;126758;126759;126760;126761;126762;126763;126764;126765 126746 24 LYHPTVPLAR VEVFILQLEGEKHWRLYHPTVPLAREYSVE EKHWRLYHPTVPLAREYSVEAEERIGRPVH R L Y A R E 1 1 0 0 0 0 0 0 1 0 2 0 0 0 2 0 1 0 1 1 0 0 10 0 1165.6608 Q8IUF8;H0Y9L8 Q8IUF8 198 207 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes no 2 0.0052914 66.073 By MS/MS 1 0.69403 0.5952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69403 0.5952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3374700 1901600 1473000 0 0 0 0 0 0 0 0 0 3374700 1901600 1473000 0 0 0 0 0 0 23808 3313 24816 125588 126766 126766 1 LYIDSYEK VFRLSGTGSAGATIRLYIDSYEKDVAKINQ SAGATIRLYIDSYEKDVAKINQDPQVMLAP R L Y E K D 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 8 0 1029.5019 P36871;A0A3B3ITK7 P36871 516 523 PGM1 Phosphoglucomutase-1 yes no 2 0.0061436 72.485 By MS/MS By MS/MS 1 1 1.2021 1.0785 0.93014 2 Median 1.1209 1.0715 NaN 1 0 Median 1.2892 1.0856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12740000 5889800 6850100 5425000 2695600 2729300 7314900 3194100 4120800 0 0 0 0 0 0 0 0 0 0 0 0 23809 2262 24817 125589;125590 126767;126768;126769 126768 3 LYIDSYEKDVAK VFRLSGTGSAGATIRLYIDSYEKDVAKINQ TIRLYIDSYEKDVAKINQDPQVMLAPLISI R L Y A K I 1 0 0 2 0 0 1 0 0 1 1 2 0 0 0 1 0 0 2 1 0 0 12 1 1442.7293 P36871;A0A3B3ITK7 P36871 516 527 PGM1 Phosphoglucomutase-1 yes no 2 1.5018E-05 114.4 By MS/MS 1 0.93727 0.8747 NaN 1 Median 0.93727 0.8747 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24592000 12629000 11963000 24592000 12629000 11963000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23810 2262 24818 125591 126770 126770 1 LYIEAEIK ERLVAQFPSSGRFWKLYIEAEIKAKNYDKV SSGRFWKLYIEAEIKAKNYDKVEKLFQRCL K L Y I K A 1 0 0 0 0 0 2 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 977.54335 Q12996;E9PLP8 Q12996 70 77 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.028842 40.103 By MS/MS 1 1.5538 1.3513 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5538 1.3513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 956950 393490 563460 0 0 0 0 0 0 0 0 0 956950 393490 563460 0 0 0 0 0 0 23811 2777 24819 125592 126771 126771 1 LYIEFVK GKLSVQGEVSTFTGKLYIEFVKGYYDNPKV EVSTFTGKLYIEFVKGYYDNPKVCALYIMA K L Y V K G 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 7 0 910.51641 F5H1S8;Q14165;H0YG07 F5H1S8 108 114 MLEC Malectin yes no 2 0.032881 62.715 By MS/MS By MS/MS 2 1 1.4747 1.3394 40.139 3 Median 1.3972 1.2755 6.9144 2 2 Median NaN NaN NaN 0 0 Median 2.657 2.5431 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40319000 12062000 28257000 36079000 10917000 25163000 0 0 0 4239800 1145100 3094700 0 0 0 0 0 0 0 0 0 23812 1021 24820 125593;125594;125595 126772;126773;126774 126773 3 LYIGLAGLATDVQTVAQR MVTTDFQKIFPMGDRLYIGLAGLATDVQTV GLAGLATDVQTVAQRLKFRLNLYELKEGRQ R L Y Q R L 3 1 0 1 0 2 0 2 0 1 3 0 0 0 0 0 2 0 1 2 0 0 18 0 1888.0418 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 49 66 PSMB3 Proteasome subunit beta type-3 yes no 2;3 1.595E-06 83.314 By MS/MS By matching By MS/MS 4 4 1 1.1949 1.0598 8.4235 9 Median 1.0989 1.0477 11.507 4 0 Median 1.2613 1.0732 4.9497 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92967 0.98293 NaN 1 0 Median NaN NaN NaN 0 0 Median 12269000 5851900 6417100 8087100 3912000 4175100 2872600 1269300 1603300 0 0 0 0 0 0 1309200 670600 638610 0 0 0 23813 2391 24821 125596;125597;125598;125599;125600;125601;125602;125603;125604 126775;126776;126777;126778 126776 4 LYIGNLNESVTPADLEK ______________________________ IGNLNESVTPADLEKVFAEHKISYSGQFLV K L Y E K V 1 0 2 1 0 0 2 1 0 1 3 1 0 0 1 1 1 0 1 1 0 0 17 0 1874.9626 Q9NZI8 Q9NZI8 4 20 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 2.1298E-05 73.848 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 3 5 3 1.0785 0.9507 28.725 15 Median 0.83408 0.77359 NaN 1 0 Median 1.3 1.1046 44.52 2 0 Median 1.0726 1.0754 NaN 1 0 Median 1.1072 0.93851 34.079 3 0 Median 1.2323 1.1753 25.736 5 2 Median 1.0442 0.88246 10.914 3 0 Plateau 105690000 51202000 54490000 47823000 24920000 22904000 12012000 5449100 6562700 18410000 8615900 9794200 4213400 1910700 2302700 20781000 9164400 11616000 2453100 1142200 1310900 23814 4188 24822 125605;125606;125607;125608;125609;125610;125611;125612;125613;125614;125615;125616;125617;125618;125619 126779;126780;126781;126782;126783;126784;126785;126786;126787;126788;126789;126790;126791 126781 13 LYIGNLSENAAPSDLESIFK ______________________________ LSENAAPSDLESIFKDAKIPVSGPFLVKTG K L Y F K D 2 0 2 1 0 0 2 1 0 2 3 1 0 1 1 3 0 0 1 0 0 0 20 0 2180.1001 O00425;F8WD15 O00425 4 23 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes no 2 2.8566E-08 67.275 By matching By MS/MS By matching By matching 1 2 1 1 0.9924 0.89331 15.787 5 Median 0.9924 0.95075 NaN 1 0 Median 1.1657 1.0077 26.034 2 0 Median NaN NaN NaN 0 0 Median 1.0029 0.89331 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93134 0.81647 NaN 1 0 Median 7534300 3322300 4212000 4792600 2250000 2542600 2605600 1011900 1593800 0 0 0 54564 23097 31468 0 0 0 81498 37329 44169 23815 1462 24823 125620;125621;125622;125623;125624 126792;126793 126792 2 LYIGNLSPAVTADDLR ______________________________ YIGNLSPAVTADDLRQLFGDRKLPLAGQVL K L Y L R Q 2 1 1 2 0 0 0 1 0 1 3 0 0 0 1 1 1 0 1 1 0 0 16 0 1716.9046 F8W930;Q9Y6M1 F8W930 5 20 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.00011968 67.153 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 0.9966 0.89239 24.497 7 Median 0.78585 0.7501 NaN 1 0 Median 0.9966 0.85922 NaN 1 0 Median 0.8707 0.91955 NaN 1 0 Median 0.98199 0.82775 NaN 1 0 Median 1.2823 1.3294 21.424 2 1 Median 1.0387 0.89239 NaN 1 0 Median 18367000 9351900 9014700 9570600 5399100 4171500 1265800 636890 628880 3575800 1631700 1944100 528700 269530 259160 2712700 1082200 1630400 713100 332490 380610 23816 1088 24824 125625;125626;125627;125628;125629;125630;125631 126794;126795;126796;126797;126798;126799;126800 126795 7 LYILQQAR HREETEELMRKYEARLYILQQARRDPLTKQ MRKYEARLYILQQARRDPLTKQISDNQILL R L Y A R R 1 1 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1003.5815 P46939 P46939 2359 2366 UTRN Utrophin yes yes 2 0.0034066 98.133 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1591 1.0023 16.488 7 Median 1.2961 1.3158 5.3158 2 0 Median 1.1183 0.95382 0.78738 2 0 Median 0.86229 0.86811 NaN 1 0 Median 1.2527 1.0506 6.666 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26079000 11490000 14589000 10871000 4384800 6486200 5646000 2467800 3178100 3021100 1526200 1494900 6540500 3110800 3429700 0 0 0 0 0 0 23817 2349 24825 125632;125633;125634;125635;125636;125637;125638 126801;126802 126801 2 LYINHTPPPLSK TVKDSLIELKESSAKLYINHTPPPLSKSKE SAKLYINHTPPPLSKSKEREMDKKDLDKSR K L Y S K S 0 0 1 0 0 0 0 0 1 1 2 1 0 0 3 1 1 0 1 0 0 0 12 0 1378.7609 Q8NI27;A0A0C4DG98;H0Y594;H0Y7U4;B7ZBA0 Q8NI27 1438 1449 THOC2 THO complex subunit 2 yes no 3 0.023826 34.685 By MS/MS 1 0.55308 0.60978 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55308 0.60978 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15483000 9338400 6145000 0 0 0 0 0 0 15483000 9338400 6145000 0 0 0 0 0 0 0 0 0 23818 3448 24826 125639 126803 126803 1 LYISNTFNPAKPDAEDSDGSIASWELR QEALKRPMKQKRKLRLYISNTFNPAKPDAE DAEDSDGSIASWELRVEGKLLDDPSKQKRK R L Y L R V 3 1 2 3 0 0 2 1 0 2 2 1 0 1 2 4 1 1 1 0 0 0 27 1 2995.4199 Q6STE5 Q6STE5 159 185 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 3 0.044721 11.003 By MS/MS 1 0.39772 0.44304 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39772 0.44304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2310500 1432200 878300 0 0 0 0 0 0 2310500 1432200 878300 0 0 0 0 0 0 0 0 0 23819 3183 24827 125640 126804 126804 1 LYISQLQK HDEVWFKRPDGSKSKLYISQLQKGKYSIKH PDGSKSKLYISQLQKGKYSIKHS_______ K L Y Q K G 0 0 0 0 0 2 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 8 0 991.57023 Q5PSV4 Q5PSV4 308 315 BRMS1L Breast cancer metastasis-suppressor 1-like protein yes yes 2 0.020415 46.426 By MS/MS 1 0.66565 0.70601 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66565 0.70601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4778000 2869800 1908300 0 0 0 0 0 0 4778000 2869800 1908300 0 0 0 0 0 0 0 0 0 23820 3066 24828 125641 126805 126805 1 LYIWSGR PRARAGHCAVAINTRLYIWSGRDGYRKAWN CAVAINTRLYIWSGRDGYRKAWNNQVCCKD R L Y G R D 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 0 0 7 0 893.47594 A6NEM2;P51610 A6NEM2 334 340 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.012264 78.616 By matching By MS/MS By MS/MS By matching 1 4 4 2 1.3208 1.0966 21.482 11 Median NaN NaN NaN 0 0 Median 1.2741 1.0966 NaN 1 0 Median 0.99903 1.0816 36.85 4 0 Median 1.3219 1.143 9.7145 4 0 Median NaN NaN NaN 0 0 Median 1.3391 1.1169 3.147 2 0 Median 17694000 8490500 9203100 0 0 0 1683100 724180 958940 14485000 7128500 7356300 1246600 519120 727470 0 0 0 279050 118640 160410 23821 509;2438 24829 125642;125643;125644;125645;125646;125647;125648;125649;125650;125651;125652 126806;126807;126808;126809;126810;126811 126809 6 LYKEELEQTYHAK QALHEMREQHDAQVRLYKEELEQTYHAKLE VRLYKEELEQTYHAKLENARLSSEMNTSTV R L Y A K L 1 0 0 0 0 1 3 0 1 0 2 2 0 0 0 0 1 0 2 0 0 0 13 1 1650.8253 P20700;E9PBF6;A0A0D9SFE5 P20700 259 271 LMNB1 Lamin-B1 yes no 2;3;4 1.2375E-07 143.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 8 5 11 15 0.96466 1.0486 25.932 42 Median 0.9575 0.90441 NaN 1 0 Median 0.81245 0.76342 4.5726 2 0 Median 0.85141 0.92237 8.8652 8 0 Median 1.7264 1.594 24.247 5 0 Median 0.85361 0.91296 6.9432 11 0 Median 1.4338 1.2794 5.869 15 0 Median 1758100000 838030000 920050000 4869900 2628700 2241200 3387600 1749700 1638000 209000000 105230000 103770000 129730000 44171000 85559000 1066500000 547340000 519150000 344600000 136910000 207690000 23822 2084 24830 125653;125654;125655;125656;125657;125658;125659;125660;125661;125662;125663;125664;125665;125666;125667;125668;125669;125670;125671;125672;125673;125674;125675;125676;125677;125678;125679;125680;125681;125682;125683;125684;125685;125686;125687;125688;125689;125690;125691;125692;125693;125694 126812;126813;126814;126815;126816;126817;126818;126819;126820;126821;126822;126823;126824;126825;126826;126827;126828;126829;126830;126831;126832;126833;126834;126835;126836;126837;126838;126839;126840;126841;126842;126843;126844;126845;126846;126847;126848;126849;126850;126851;126852;126853;126854;126855;126856;126857;126858;126859;126860;126861;126862;126863;126864;126865;126866;126867;126868;126869;126870;126871;126872;126873;126874;126875;126876;126877;126878;126879;126880;126881 126870 69 LYKELPDPQESIQR TGLGRSAGWNIPMGKLYKELPDPQESIQRA KLYKELPDPQESIQRAAANFFSASCVPCAD K L Y Q R A 0 1 0 1 0 2 2 0 0 1 2 1 0 0 2 1 0 0 1 0 0 0 14 1 1714.889 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 153 166 yes no 2;3 1.5799E-05 92.866 By MS/MS 3 0.297 0.30146 121.92 2 Median 0.297 0.30146 121.92 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34384000 23406000 10978000 34384000 23406000 10978000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 23823 769 24831 125695;125696;125697 126882;126883;126884;126885 126883 4 LYKLELEQTYQAK QALEELRSQHDEQVRLYKLELEQTYQAKLD VRLYKLELEQTYQAKLDSAKLSSDQNDKAA R L Y A K L 1 0 0 0 0 2 2 0 0 0 3 2 0 0 0 0 1 0 2 0 0 0 13 1 1625.8665 Q03252 Q03252 273 285 LMNB2 Lamin-B2 yes yes 2;3 4.9412E-15 143.96 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 7 4 1.0298 1.087 34.389 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89957 0.99753 6.6301 3 0 Plateau 1.9245 1.8023 65.788 4 1 Median 0.95083 1.0159 11.987 7 2 Median 1.5689 1.411 6.9682 4 0 Linear 258080000 130540000 127540000 0 0 0 0 0 0 35374000 17776000 17598000 6861300 2222000 4639300 203450000 105440000 98012000 12397000 5108900 7287900 23824 2709 24832 125698;125699;125700;125701;125702;125703;125704;125705;125706;125707;125708;125709;125710;125711;125712;125713;125714;125715 126886;126887;126888;126889;126890;126891;126892;126893;126894;126895;126896;126897;126898;126899;126900;126901 126892 16 LYLADPMK PQYQTWEEFSRAAEKLYLADPMKARVVLKY FSRAAEKLYLADPMKARVVLKYRHSDGNLC K L Y M K A 1 0 0 1 0 0 0 0 0 0 2 1 1 0 1 0 0 0 1 0 0 0 8 0 949.49429 P49458;Q6P2S0;Q659G3;E9PE20 P49458 17 24 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein yes no 2 0.0035575 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 2 1 0.87174 0.80069 9.6595 13 Median 0.87274 0.79155 0.96014 2 1 Median 1 0.82063 7.1293 3 0 Plateau 0.81862 0.83204 10.69 3 0 Median 0.99827 0.80479 0.69523 2 0 Median 0.72602 0.77287 10.389 2 0 Median 0.76922 0.62607 NaN 1 0 Median 145790000 75397000 70396000 71725000 35829000 35897000 20173000 10081000 10092000 31482000 17819000 13663000 15234000 7267800 7965700 6458500 3870400 2588100 719430 529660 189780 23825 2384 24833;24834 125716;125717;125718;125719;125720;125721;125722;125723;125724;125725;125726;125727;125728 126902;126903;126904;126905;126906;126907;126908;126909;126910;126911;126912;126913;126914;126915;126916;126917;126918 126909 1100 17 LYLDGSEK DDEDFETAVKKLNGKLYLDGSEKCRPLEEN VKKLNGKLYLDGSEKCRPLEENTADNEKEC K L Y E K C 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 923.46001 P49792 P49792 2688 2695 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0038087 85.212 By MS/MS 1 1.1331 1.2214 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1331 1.2214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4419700 2251300 2168400 0 0 0 0 0 0 4419700 2251300 2168400 0 0 0 0 0 0 0 0 0 23826 2401 24835 125729 126919;126920 126919 2 LYLEDDDPVQAEAYINR YNVDYKLETYLKIARLYLEDDDPVQAEAYI LEDDDPVQAEAYINRASLLQNESTNEQLQI R L Y N R A 2 1 1 3 0 1 2 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 17 0 2022.9535 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 154 170 COPS4 COP9 signalosome complex subunit 4 yes no 2 1.212E-14 164.13 By MS/MS 1 1.0592 1.154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0592 1.154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10360000 4727100 5633300 0 0 0 0 0 0 10360000 4727100 5633300 0 0 0 0 0 0 0 0 0 23827 813 24836 125730 126921;126922 126922 2 LYLFGLESAEQAHEWVK HGFEHTFEVYTEGERLYLFGLESAEQAHEW LFGLESAEQAHEWVKCIAKAFVPPLAEDLL R L Y V K C 2 0 0 0 0 1 3 1 1 0 3 1 0 1 0 1 0 1 1 1 0 0 17 0 2019.0102 E7EU13;Q96P48;A0A0A0MSJ2;F8WBT0;F5GWN4 E7EU13 582 598 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 3 0.0016707 28.212 By matching By MS/MS 1 1 1.1364 1.0381 21.301 2 Median 0.95059 0.89293 NaN 1 0 Median 1.3585 1.2068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4517100 1875000 2642100 1509400 732940 776470 3007700 1142100 1865600 0 0 0 0 0 0 0 0 0 0 0 0 23828 893 24837 125731;125732 126923 126923 1 LYLINSPVVR DPVSIIQKYGADALRLYLINSPVVRAENLR ADALRLYLINSPVVRAENLRFKEEGVRDVL R L Y V R A 0 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 10 0 1172.6917 P41252;A0A0A0MSX9;J3KR24 P41252 625 634 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 2.3011E-05 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 2 2 1.0236 0.94209 12.117 12 Median 0.98343 0.94562 19.29 3 0 Median 1.0835 0.91738 8.4342 2 0 Median 0.97081 1.068 NaN 1 0 Median 1.1865 0.99961 15.794 2 0 Median 0.84088 0.89007 4.3509 2 0 Median 1.1514 0.9529 2.7852 2 0 Median 82801000 39819000 42982000 41638000 19967000 21671000 30537000 14453000 16084000 4453200 2350000 2103200 1167200 569990 597190 4586900 2281900 2304900 419210 197310 221890 23829 2302 24838 125733;125734;125735;125736;125737;125738;125739;125740;125741;125742;125743;125744 126924;126925;126926;126927;126928;126929;126930;126931;126932 126927 9 LYLNETFSELR AGTLGTVAGSAAGLKLYLNETFSELRLDSV AGLKLYLNETFSELRLDSVVQWMEHFETWP K L Y L R L 0 1 1 0 0 0 2 0 0 0 3 0 0 1 0 1 1 0 1 0 0 0 11 0 1383.7034 F8VPD4;P27708;H7C3Z5 F8VPD4 1494 1504 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 7.7623E-27 171.36 By MS/MS By MS/MS 2 2 1.173 1.1019 12.804 3 Plateau 1.1765 1.111 NaN 1 1 Median 1.0426 0.89065 1.4667 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18839000 9003400 9835500 6599300 3027200 3572000 12240000 5976200 6263400 0 0 0 0 0 0 0 0 0 0 0 0 23830 1057 24839 125745;125746;125747;125748 126933;126934;126935;126936 126933 4 LYLNVLNR GSFSAGGPGKGMFSRLYLNVLNRHHWMYNA GKGMFSRLYLNVLNRHHWMYNATSYHHSYE R L Y N R H 0 1 2 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 8 0 1003.5815 Q10713;Q5SXN9 Q10713 363 370 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 2 0.0023313 114.54 By MS/MS By matching By MS/MS By matching 2 3 2 2 1.2518 1.17 12.211 9 Median 1.1338 1.0858 10.56 2 0 Median 1.4374 1.2335 12.861 3 0 Median 1.1124 1.1334 12.605 2 0 Median 1.4528 1.2634 18.6 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36952000 16029000 20923000 18518000 8373000 10145000 5469500 2210300 3259200 11602000 4894600 6707600 1362900 551650 811270 0 0 0 0 0 0 23831 2754 24840 125749;125750;125751;125752;125753;125754;125755;125756;125757 126937;126938;126939;126940 126938 4 LYLPPSTPDFSR LCQTKVLLDIFTGVRLYLPPSTPDFSRLRR GVRLYLPPSTPDFSRLRRYFVAFDGDLVQE R L Y S R L 0 1 0 1 0 0 0 0 0 0 2 0 0 1 3 2 1 0 1 0 0 0 12 0 1391.7085 P49916 P49916 943 954 LIG3 DNA ligase 3 yes yes 2 3.0793E-06 110.14 By MS/MS 1 0.51578 0.54802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51578 0.54802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9030700 6271100 2759600 0 0 0 0 0 0 9030700 6271100 2759600 0 0 0 0 0 0 0 0 0 23832 2406 24841 125758 126941;126942;126943;126944 126942 4 LYLPVQNK SDRLYSEDELPAEFKLYLPVQNKAKQ____ ELPAEFKLYLPVQNKAKQ____________ K L Y N K A 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 973.55967 Q9Y6A4 Q9Y6A4 183 190 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.0055194 75.311 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2349 1.2602 43.617 5 Median 0.9035 0.84124 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98533 0.9238 NaN 1 0 Median 3.0918 2.557 NaN 1 0 Median 1.2349 1.2602 NaN 1 0 Median 1.5616 1.2923 NaN 1 0 Median 60416000 27937000 32479000 15948000 8240400 7707100 0 0 0 20828000 10333000 10495000 1471000 338830 1132200 17592000 7521600 10070000 4577300 1503100 3074200 23833 4486 24842 125759;125760;125761;125762;125763 126945;126946;126947;126948 126946 4 LYLQELITITQK EVWQENVPGSFGGIRLYLQELITITQKALQ GIRLYLQELITITQKALQSQSWKMKAQGAI R L Y Q K A 0 0 0 0 0 2 1 0 0 2 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1461.8443 Q5VYK3;J3KN16 Q5VYK3 1523 1534 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0089532 37.722 By MS/MS 2 1.2305 1.1065 11.021 2 Median NaN NaN NaN 0 0 Median 1.2305 1.1065 11.021 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12674000 5851200 6823100 0 0 0 12674000 5851200 6823100 0 0 0 0 0 0 0 0 0 0 0 0 23834 3116 24843 125764;125765 126949 126949 1 LYLQQTLNDTVGR VEKLQDIQQRGGEERLYLQQTLNDTVGRKI ERLYLQQTLNDTVGRKIVMDFLGFNWNWIN R L Y G R K 0 1 1 1 0 2 0 1 0 0 3 0 0 0 0 0 2 0 1 1 0 0 13 0 1519.7995 E9PL41;Q9NWT6 E9PL41 37 49 HIF1AN Hypoxia-inducible factor 1-alpha inhibitor yes no 2 2.7061E-07 117.67 By MS/MS 1 0.96717 0.96003 NaN 1 Median 0.96717 0.96003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4740000 2318900 2421100 4740000 2318900 2421100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23835 955 24844 125766 126950 126950 1 LYLVDLAGSEK VKQENTQTEQKLSGKLYLVDLAGSEKVSKT LSGKLYLVDLAGSEKVSKTGAEGAVLDEAK K L Y E K V 1 0 0 1 0 0 1 1 0 0 3 1 0 0 0 1 0 0 1 1 0 0 11 0 1206.6496 O60282;A0A0G2JMZ6;P33176 P33176 227 237 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 0.00027281 76.465 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2438 1.0547 76.922 5 Median 1.0632 1.0234 NaN 1 0 Median 1.2438 1.0547 NaN 1 0 Median 1.6145 1.7407 7.5441 2 1 Median NaN NaN NaN 0 0 Median 0.2589 0.26666 NaN 1 1 Median NaN NaN NaN 0 0 Median 44614000 22533000 22081000 25601000 12602000 13000000 7886600 3423700 4462900 5179200 1900900 3278300 0 0 0 5947400 4606800 1340600 0 0 0 23836 2221;1609 24845 125767;125768;125769;125770;125771 126951;126952;126953;126954;126955;126956 126952 6 LYLVSDVLYNSSAK SLSILKTPLPKKIARLYLVSDVLYNSSAKV RLYLVSDVLYNSSAKVANASYYRKFFETKL R L Y A K V 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 3 0 0 2 2 0 0 14 0 1570.8243 O15042;E7ET15 O15042 595 608 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 1.1362E-05 89.403 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.0015 1.056 19.799 6 Median NaN NaN NaN 0 0 Median 1.0708 0.95335 16.9 2 0 Median 1.0332 1.1208 4.0057 2 0 Median NaN NaN NaN 0 0 Median 1.0109 1.0379 NaN 1 0 Median 0.83184 0.687 NaN 1 0 Median 26744000 12825000 13919000 0 0 0 2814900 1309000 1505900 14666000 6678400 7987900 0 0 0 7313200 3701400 3611700 1949600 1135800 813790 23837 1515 24846 125772;125773;125774;125775;125776;125777 126957;126958;126959;126960 126960 4 LYNIWIR RSFLSTLPGQSLIDKLYNIWIRLQSHVNIV PGQSLIDKLYNIWIRLQSHVNIVFDSEMDK K L Y I R L 0 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 7 0 976.54944 O95602;B9ZVN9 O95602 387 393 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.045339 42.464 By matching By MS/MS By matching 1 1 1 1.4842 1.3201 13.314 3 Median NaN NaN NaN 0 0 Median 1.4842 1.3201 NaN 1 0 Median 0.98938 1.0991 NaN 1 0 Median 1.6284 1.424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1902900 826210 1076700 0 0 0 245540 95731 149800 1415300 639350 775900 242140 91124 151010 0 0 0 0 0 0 23838 1781 24847 125778;125779;125780 126961 126961 1 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR DNLRLKVTEGGEPYRLYNLDVFQYELYNPM LYGSVPVLLAHNPHRDLGIFWLNAAETWVD R L Y H R D 2 1 3 1 0 1 1 1 2 0 6 0 1 1 3 1 0 0 4 3 0 0 31 0 3645.8442 E9PKU7;Q14697;F5H6X6 Q14697 279 309 GANAB Neutral alpha-glucosidase AB no no 4 1.5829E-09 49.101 By MS/MS 2 1.3286 1.1514 0.29823 2 Median NaN NaN NaN 0 0 Median 1.3286 1.1514 0.29823 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5709600 2813800 2895800 0 0 0 5709600 2813800 2895800 0 0 0 0 0 0 0 0 0 0 0 0 23839 2896;951 24848 125781;125782 126962;126963 126962 332 2 LYNNHEIR FVTFCTKEAAQEAVKLYNNHEIRSGKHIGV AAQEAVKLYNNHEIRSGKHIGVCISVANNR K L Y I R S 0 1 2 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1057.5305 B7Z645;O60506 O60506 222 229 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0057517 74.127 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 3 1.1357 1.0966 71.643 8 Median 1.0348 1.0448 NaN 1 0 Median 1.211 1.0483 NaN 1 0 Median 1.1525 1.2057 7.0528 2 0 Median 1.1486 0.96052 NaN 1 0 Median 1.1229 1.1991 123.89 3 0 Median NaN NaN NaN 0 0 Median 16722000 7256900 9464700 2133500 995330 1138200 5102600 2346900 2755700 4700900 2129700 2571200 1067500 460340 607140 3717100 1324700 2392400 0 0 0 23840 1619;634 24849 125783;125784;125785;125786;125787;125788;125789;125790 126964;126965;126966;126967;126968;126969 126967 6 LYNPENIYLSEHGGGAGNNWASGFSQGEK EPRVIHSILNSPYAKLYNPENIYLSEHGGG GAGNNWASGFSQGEKIHEDIFDIIDREADG K L Y E K I 2 0 4 0 0 1 3 6 1 1 2 1 0 1 1 3 0 1 2 0 0 0 29 0 3095.4009 P23258;Q9NRH3;K7EKE5 P23258 85 113 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain yes no 3 4.2056E-29 78.752 By matching By MS/MS By matching By matching 1 1 1 1 0.94386 0.87516 5.6026 4 Median 0.89819 0.86537 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88813 0.85389 NaN 1 0 Median 0.99186 0.88506 NaN 1 0 Median 1.0092 0.96708 NaN 1 0 Median NaN NaN NaN 0 0 Median 28306000 12170000 16137000 2396300 1194300 1202000 0 0 0 21433000 8995400 12437000 2479500 998280 1481200 1997900 981560 1016400 0 0 0 23841 2108 24850 125791;125792;125793;125794 126970;126971 126971 2 LYNVVVDTEVTGK DTSATTALELVAGERLYNVVVDTEVTGKKL ERLYNVVVDTEVTGKKLLERGELKRRYTII R L Y G K K 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 1 4 0 0 13 0 1435.7559 O95347 O95347 549 561 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 6.603E-07 104.82 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.1772 1.0836 19.497 5 Median 1.2118 1.1736 NaN 1 0 Median 1.1772 1.0314 NaN 1 0 Median 1.0157 1.0836 NaN 1 0 Median 1.4278 1.2471 35.092 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40182000 19007000 21175000 10048000 4361100 5686900 2402700 1081900 1320800 16687000 8371700 8315100 11045000 5192300 5852200 0 0 0 0 0 0 23842 1766 24851 125795;125796;125797;125798;125799 126972;126973;126974 126973 3 LYNVVVDTEVTGKK DTSATTALELVAGERLYNVVVDTEVTGKKL RLYNVVVDTEVTGKKLLERGELKRRYTIIP R L Y K K L 0 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 2 0 1 4 0 0 14 1 1563.8508 O95347 O95347 549 562 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 1.1344E-07 114.86 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1.0263 1.0973 14.581 7 Median 0.98966 1.0374 2.596 2 0 Median 1.1083 1.0468 10.247 2 0 Median 1.0219 1.1902 11.49 2 1 Median 1.5509 1.4773 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74464000 34010000 40454000 20329000 9342700 10987000 1370400 497620 872750 46035000 21506000 24529000 6729400 2663300 4066100 0 0 0 0 0 0 23843 1766 24852 125800;125801;125802;125803;125804;125805;125806 126975;126976;126977;126978;126979;126980;126981 126980 7 LYNYFYDR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL HHPNILRLYNYFYDRRRIYLILEYAPRGEL R L Y D R R 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 0 8 0 1152.524 Q96GD4;J3QLN8;J3KT86;J3QR41;J3KTD6 Q96GD4 140 147 AURKB Aurora kinase B yes no 2 0.012659 54.549 By matching By MS/MS By matching 1 1 1 1.2868 1.329 16.028 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1562 1.2097 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2868 1.329 NaN 1 0 Median 1.1327 0.97241 NaN 1 0 Median 8093000 3477300 4615700 0 0 0 0 0 0 941890 428790 513090 0 0 0 6215600 2615500 3600100 935510 432980 502530 23844 3656 24853 125807;125808;125809 126982;126983 126983 2 LYPEGLAQLAR LSKEDRAKLFPHCGRLYPEGLAQLARADDY HCGRLYPEGLAQLARADDYEQVKNVADYYP R L Y A R A 2 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 1 0 0 0 11 0 1229.6768 F5GYQ1;P61421;J3QL14;R4GN72 F5GYQ1 288 298 ATP6V0D1 V-type proton ATPase subunit d 1 yes no 2 0.0016318 57.96 By MS/MS By MS/MS By matching By matching By matching By matching 2 3 2 2 1 1 1.304 1.0997 37.658 11 Median 0.84862 0.79488 14.826 2 0 Median 1.304 1.0997 13.076 3 0 Median 1.1945 1.2108 40.462 2 0 Median 1.0185 0.89299 74.075 2 0 Median 1.6397 1.7196 NaN 1 0 Median 2.0575 1.5839 NaN 1 0 Median 36390000 15748000 20642000 9114400 4197800 4916700 10806000 4465700 6340700 10404000 4967800 5436700 1040200 367750 672490 4457800 1586000 2871800 566710 162750 403960 23845 1012 24854 125810;125811;125812;125813;125814;125815;125816;125817;125818;125819;125820 126984;126985;126986 126985 3 LYPGSVYGR SRQQRKAEIMESIKRLYPGSVYGRLIDLCQ MESIKRLYPGSVYGRLIDLCQPTQKKYQIA R L Y G R L 0 1 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 2 1 0 0 9 0 1010.5185 Q14683;G8JLG1 Q14683 510 518 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00049756 104.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.0611 0.93149 12.541 5 Median 0.95969 0.90513 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76364 0.83973 NaN 1 1 Median 1.0611 0.93149 NaN 1 0 Median 1.1885 1.1693 NaN 1 0 Median 1.2116 1.0013 NaN 1 0 Median 27905000 13779000 14126000 3120800 1394100 1726700 0 0 0 10011000 5643100 4367400 2047500 938460 1109000 2280000 1052000 1227900 10446000 4751400 5694700 23846 2889 24855 125821;125822;125823;125824;125825;125826 126987;126988;126989;126990;126991;126992;126993;126994;126995;126996 126988 10 LYPNMTAVLLHNTQLDQR TATITEIRDTGVMVKLYPNMTAVLLHNTQL NMTAVLLHNTQLDQRKIKHPTALGLEVGQE K L Y Q R K 1 1 2 1 0 2 0 0 1 0 4 0 1 0 1 0 2 0 1 1 0 0 18 0 2126.0943 Q8TCS8 Q8TCS8 698 715 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 3 2.4323E-06 56.407 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1364 1.0665 8.7528 5 Median 1.1259 1.0784 1.5756 2 2 Median 1.2154 1.0535 NaN 1 0 Median 1.0117 1.0322 NaN 1 0 Median 1.489 1.2831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26189000 12583000 13607000 9957100 5060700 4896300 2752500 1456000 1296500 9649800 4516900 5132800 3830200 1549000 2281200 0 0 0 0 0 0 23847 3467 24856 125827;125828;125829;125830;125831 126997;126998;126999;127000;127001;127002;127003 127000 7 LYPPDNAPLAFSSK MRTLFSFLGEIEELRLYPPDNAPLAFSSKV RLYPPDNAPLAFSSKVCYVKFRDPSSVGVA R L Y S K V 2 0 1 1 0 0 0 0 0 0 2 1 0 1 3 2 0 0 1 0 0 0 14 0 1518.7718 A0A087WY03;E5RFV3 A0A087WY03 50 63 SREK1 yes no 2 8.9045E-05 87.363 By MS/MS 1 0.7809 0.77493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7809 0.77493 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32325000 18693000 13632000 0 0 0 0 0 0 32325000 18693000 13632000 0 0 0 0 0 0 0 0 0 23848 75 24857 125832 127004;127005 127004 2 LYPPSAEYPDLR LLRPEPVRAASERRRLYPPSAEYPDLRKHN RRRLYPPSAEYPDLRKHNNCMASHLTPAVY R L Y L R K 1 1 0 1 0 0 1 0 0 0 2 0 0 0 3 1 0 0 2 0 0 0 12 0 1419.7034 P12532;F8WCN3;C9JSQ1;C9JJX8;C9J995;C9J8F6 P12532 46 57 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial yes no 2 0.0011208 85.377 By MS/MS 1 0.52764 0.5754 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52764 0.5754 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11901000 7962000 3939000 0 0 0 0 0 0 11901000 7962000 3939000 0 0 0 0 0 0 0 0 0 23849 1982 24858 125833 127006 127006 1 LYPPSAEYPDLRK LLRPEPVRAASERRRLYPPSAEYPDLRKHN RRLYPPSAEYPDLRKHNNCMASHLTPAVYA R L Y R K H 1 1 0 1 0 0 1 0 0 0 2 1 0 0 3 1 0 0 2 0 0 0 13 1 1547.7984 P12532;F8WCN3;C9JSQ1;C9JJX8;C9J995;C9J8F6 P12532 46 58 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial yes no 3 0.054126 11.976 By matching By matching By MS/MS 1 1 1 1.2075 1.0583 58.751 3 Median 2.0016 1.947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52861 0.60141 NaN 1 0 Median 1.2075 1.0583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11978000 6156200 5821900 1775400 412430 1363000 0 0 0 8676900 5177700 3499200 1525800 566040 959750 0 0 0 0 0 0 23850 1982 24859 125834;125835;125836 127007 127007 1 LYPTLVIR TEFFENPAFRPDGLKLYPTLVIRGTGLYEL FRPDGLKLYPTLVIRGTGLYELWKSGRYKS K L Y I R G 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 0 1 0 1 1 0 0 8 0 973.59605 Q9H9T3;B4DKA4 Q9H9T3 317 324 ELP3 Elongator complex protein 3 yes no 2 0.044676 35.88 By MS/MS 1 0.92448 0.92213 NaN 1 Median 0.92448 0.92213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2766100 1244400 1521700 2766100 1244400 1521700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23851 4002 24860 125837 127008 127008 1 LYPVLLVK SRASLTRVHRQAYARLYPVLLVKQDGSTIH HRQAYARLYPVLLVKQDGSTIHIRYREPRR R L Y V K Q 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 1 2 0 0 8 0 943.61064 Q7Z7F7;X6RIW1 Q7Z7F7 51 58 MRPL55 39S ribosomal protein L55, mitochondrial yes no 2 0.012201 55.441 By MS/MS By matching By matching By matching 1 1 1 1 1.4248 1.1735 19.732 4 Median 0.92407 0.83916 NaN 1 0 Median 1.3809 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.47 1.2 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6141 1.3252 NaN 1 0 Median 22285000 10907000 11378000 15628000 8039900 7588400 3104700 1236900 1867800 0 0 0 854450 304420 550040 0 0 0 2697600 1326100 1371500 23852 3257 24861 125838;125839;125840;125841 127009;127010;127011;127012 127010 4 LYPVLQQSLVR SWAEAVRLGLEGCQRLYPVLQQSLVRAARR GCQRLYPVLQQSLVRAARRRGAAAQP____ R L Y V R A 0 1 0 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 1 2 0 0 11 0 1314.766 Q5RKV6 Q5RKV6 251 261 EXOSC6 Exosome complex component MTR3 yes yes 2 7.616E-08 130.75 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 1 1.0649 0.99151 9.2627 9 Median 0.95976 0.90949 4.4273 2 0 Median 1.2639 1.0805 NaN 1 0 Median 1.0654 1.0228 4.398 2 1 Median 1.279 1.0675 12.328 2 0 Median 1.0434 1.0361 NaN 1 0 Median 1.0649 0.88545 NaN 1 0 Median 28805000 13337000 15468000 4627200 2160700 2466500 491050 218410 272640 17621000 7849500 9771300 1692700 804170 888570 4271700 2254100 2017600 101370 49811 51556 23853 3072 24862 125842;125843;125844;125845;125846;125847;125848;125849;125850 127013;127014;127015;127016;127017;127018;127019;127020;127021;127022 127018 10 LYPWGVVEVENPEHNDFLK SNQLIEAKGKKVRGRLYPWGVVEVENPEHN GVVEVENPEHNDFLKLRTMLITHMQDLQEV R L Y L K L 0 0 2 1 0 0 3 1 1 0 2 1 0 1 2 0 0 1 1 3 0 0 19 0 2284.1164 Q15019;B5MCX3;H7C2Y0 Q15019 257 275 SEPT2 Septin-2 yes no 2;3 1.122E-13 108.59 By matching By MS/MS By MS/MS By matching By matching 1 3 2 1 2 0.76758 0.71647 67.893 8 Median 0.67777 0.64174 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68383 0.73631 5.8197 3 0 Plateau 0.88658 0.75198 10.823 2 0 Median 4.1027 4.6943 NaN 1 0 Median 1.599 1.3089 NaN 1 0 Median 228890000 128870000 100020000 2319400 1524800 794640 0 0 0 216000000 122880000 93122000 7536900 3657200 3879700 1673000 220330 1452700 1363400 593190 770210 23854 2914 24863 125851;125852;125853;125854;125855;125856;125857;125858;125859 127023;127024;127025;127026;127027;127028;127029 127028 7 LYQEFGIR SGESKYTGTLDCAKKLYQEFGIRGIYKGTV TLDCAKKLYQEFGIRGIYKGTVLTLMRDVP K L Y I R G 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1024.5342 O43772;C9JPE1 O43772 159 166 SLC25A20 Mitochondrial carnitine/acylcarnitine carrier protein yes no 2 0.0044851 81.297 By MS/MS 1 1.1776 1.1176 NaN 1 Median 1.1776 1.1176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4641800 2123600 2518200 4641800 2123600 2518200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23855 715 24864 125860 127030;127031 127031 2 LYQEMFAWK QVIYLNPPIEECRYKLYQEMFAWKMVVLSL EECRYKLYQEMFAWKMVVLSLPRIQSQRYQ K L Y W K M 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 1 1 0 0 0 9 0 1214.5794 Q14204 Q14204 982 990 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0018558 76.899 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 2 1 1.0726 1.0449 29.683 7 Median 0.99079 0.96216 10.966 2 0 Median 1.1988 1.0449 NaN 1 0 Median 1.0726 1.1468 NaN 1 0 Median 1.1343 1.0733 22.557 2 0 Median 1.8859 2.1362 NaN 1 0 Median NaN NaN NaN 0 0 Median 40558000 19591000 20967000 22851000 11605000 11245000 3584500 1656800 1927700 11341000 5364200 5976800 1570400 662270 908080 1211300 302550 908730 0 0 0 23856 2865 24865 125861;125862;125863;125864;125865;125866;125867 127032;127033;127034;127035;127036;127037 127032 6 LYQEVEIASVDAFQGR YLVQYMQFSGSLHTKLYQEVEIASVDAFQG YQEVEIASVDAFQGREKDFIILSCVRANEH K L Y G R E 2 1 0 1 0 2 2 1 0 1 1 0 0 1 0 1 0 0 1 2 0 0 16 0 1823.9054 Q92900 Q92900 828 843 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00086177 57.019 By MS/MS 1 1.2641 1.2416 NaN 1 Median 1.2641 1.2416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2430500 1103600 1326800 2430500 1103600 1326800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23857 3564 24866 125868 127038 127038 1 LYQGHLQEESGPPPESMPK NWKQPPERELSRLRRLYQGHLQEESGPPPE HLQEESGPPPESMPKMPPRTPAEASSTGQT R L Y P K M 0 0 0 0 0 2 3 2 1 0 2 1 1 0 4 2 0 0 1 0 0 0 19 0 2122.9994 Q9Y676;A0A0G2JIC6 Q9Y676 219 237 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 3 1.7596E-05 46.663 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.82737 0.74203 21.849 4 Median 0.54278 0.53005 NaN 1 0 Median 0.92182 0.77541 NaN 1 0 Median 0.7426 0.71008 NaN 1 0 Median 1.0422 0.88814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9744900 6119000 3625900 2575700 1971700 604060 3072900 1691200 1381800 3151500 2057700 1093800 944810 398480 546330 0 0 0 0 0 0 23858 4480 24867 125869;125870;125871;125872 127039;127040;127041 127039 3 LYQHEINLFK QPQDVVSKYKTLAQKLYQHEINLFKSKTNS TLAQKLYQHEINLFKSKTNSQKGASSTWMK K L Y F K S 0 0 1 0 0 1 1 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 10 0 1303.6925 Q03701 Q03701 212 221 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2;3 0.010252 45.997 By matching By MS/MS By MS/MS By matching 1 4 1 1 1.413 1.4621 19.326 7 Median 1.0857 1.1031 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3742 1.4669 13.445 4 3 Median NaN NaN NaN 0 0 Median 1.4179 1.4621 NaN 1 0 Median 2.2995 1.9596 NaN 1 0 Median 51015000 22410000 28605000 1072000 404110 667900 0 0 0 43921000 19225000 24696000 0 0 0 5536000 2630000 2906000 485480 150580 334900 23859 2710 24868 125873;125874;125875;125876;125877;125878;125879 127042;127043;127044;127045;127046 127045 5 LYQHYQQQQQVAGGALGATEAQPQGHLQR MSSSRLPGLEGPGPKLYQHYQQQQQVAGGA ALGATEAQPQGHLQRYSTQIHSFREGT___ K L Y Q R Y 4 1 0 0 0 9 1 4 2 0 3 0 0 0 1 0 1 0 2 1 0 0 29 0 3204.5813 Q7RTS1 Q7RTS1 149 177 BHLHA15 Class A basic helix-loop-helix protein 15 yes yes 4 6.4269E-09 39.153 By MS/MS 1 0.96042 0.95849 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96042 0.95849 NaN 1 0 Median NaN NaN NaN 0 0 Median 5606900 2651200 2955800 0 0 0 0 0 0 0 0 0 0 0 0 5606900 2651200 2955800 0 0 0 23860 3233 24869 125880 127047 127047 1 LYQLLTQYK LEQADYLYESGETEKLYQLLTQYKESEDAE SGETEKLYQLLTQYKESEDAELLWRLARAS K L Y Y K E 0 0 0 0 0 2 0 0 0 0 3 1 0 0 0 0 1 0 2 0 0 0 9 0 1168.6492 H0YB83;E5RH53;Q96DB5;E5RGC8 H0YB83 48 56 RMDN1 Regulator of microtubule dynamics protein 1 yes no 2 0.01817 41.029 By MS/MS By matching By matching 1 1 1 1.0897 1.1318 12.321 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0333 0.97269 NaN 1 0 Median 1.5084 1.2416 NaN 1 0 Median 1.0897 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median 7260300 3554900 3705400 0 0 0 0 0 0 6384900 3156200 3228700 433010 194850 238150 442420 203890 238530 0 0 0 23861 845 24870 125881;125882;125883 127048 127048 1 LYQPEYQEVSTEEQREEISGK AANSLEAFIFETQDKLYQPEYQEVSTEEQR QEVSTEEQREEISGKLSAASTWLEDEGVGA K L Y G K L 0 1 0 0 0 3 6 1 0 1 1 1 0 0 1 2 1 0 2 1 0 0 21 1 2541.1871 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 692 712 HYOU1 Hypoxia up-regulated protein 1 yes no 3 7.7641E-10 61.767 By MS/MS By MS/MS By matching 1 1 1 1.0027 0.94894 16.696 3 Median 0.80385 0.83808 NaN 1 0 Median 1.0027 0.94894 NaN 1 0 Median 1.0298 1.1664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24943000 12430000 12513000 17388000 9073800 8314000 2328200 1006700 1321500 5227500 2349600 2877900 0 0 0 0 0 0 0 0 0 23862 101 24871 125884;125885;125886 127049;127050;127051 127050 3 LYQQHGAGLFDVTR RILSGRPPLGFLNPRLYQQHGAGLFDVTRG RLYQQHGAGLFDVTRGCHESCLDEEVEGQG R L Y T R G 1 1 0 1 0 2 0 2 1 0 2 0 0 1 0 0 1 0 1 1 0 0 14 0 1603.8107 A0A2R8YGD1;O14773;A0A2R8Y7U1;A0A2R8YD45 A0A2R8YGD1 414 427 TPP1 Tripeptidyl-peptidase 1 yes no 2;3 3.3699E-06 88.561 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1.2907 1.1002 38.007 7 Median 0.69679 0.6548 NaN 1 0 Median 1.2907 1.1002 NaN 1 0 Median 0.81336 0.83756 18.95 2 0 Median 2.0962 1.8027 NaN 1 0 Median 1.4506 1.4361 16.463 2 1 Median NaN NaN NaN 0 0 Median 96201000 44956000 51244000 31421000 18010000 13412000 3643900 1599500 2044400 28905000 14143000 14762000 25009000 8323900 16685000 7221800 2880700 4341100 0 0 0 23863 402 24872 125887;125888;125889;125890;125891;125892;125893;125894 127052;127053;127054;127055;127056;127057;127058;127059;127060;127061;127062 127060 11 LYQTDPSGTYHAWK ISALIVGFDFDGTPRLYQTDPSGTYHAWKA RLYQTDPSGTYHAWKANAIGRGAKSVREFL R L Y W K A 1 0 0 1 0 1 0 1 1 0 1 1 0 0 1 1 2 1 2 0 0 0 14 0 1665.7787 O14818;H0Y586;Q8TAA3;A0A087WYS6 O14818 144 157 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2;3 6.1735E-08 115.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 2 2 1 1.0655 0.96125 14.758 14 Median 1.0004 0.92942 21.509 5 0 Median 1.1902 0.99468 8.5112 4 0 Median 1.0191 0.96125 0.69859 2 0 Median 1.4602 1.2088 5.3137 2 0 Median 0.91908 0.94442 NaN 1 0 Median NaN NaN NaN 0 0 Median 394020000 190060000 203960000 319860000 155490000 164370000 46434000 21782000 24652000 21869000 10123000 11746000 4633900 1933000 2700900 1220500 734620 485870 0 0 0 23864 1497 24873 125895;125896;125897;125898;125899;125900;125901;125902;125903;125904;125905;125906;125907;125908 127063;127064;127065;127066;127067;127068;127069;127070;127071;127072;127073;127074;127075;127076 127066 14 LYQTPLELK EKLSLRQRKPDEDMKLYQTPLELKLKHSTV PDEDMKLYQTPLELKLKHSTVHVDELCPLI K L Y L K L 0 0 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 9 0 1103.6227 P52948;A0A3B3ITD8;H7C3P6 P52948 1214 1222 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.001354 82.452 By matching By MS/MS By MS/MS 2 2 2 1.116 1.0557 14.422 6 Median NaN NaN NaN 0 0 Median 1.2385 1.0851 28.986 2 0 Median 0.97474 1.0572 12.007 2 0 Median 1.1969 1.0557 6.7783 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27585000 13960000 13625000 0 0 0 4754000 1988200 2765800 19274000 10446000 8827800 3556700 1525300 2031400 0 0 0 0 0 0 23865 2462 24874 125909;125910;125911;125912;125913;125914 127077;127078;127079 127078 3 LYQVEYAFK AGFDRHITIFSPEGRLYQVEYAFKAINQGG FSPEGRLYQVEYAFKAINQGGLTSVAVRGK R L Y F K A 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 2 1 0 0 9 0 1159.5914 G3V5Z7;P60900;G3V295;G3V3I1;G3V3U4 G3V5Z7 22 30 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.1566 1.0194 10.231 6 Median 1.1635 1.0715 NaN 1 0 Median 1.1234 0.9374 13.788 2 0 Median 1.2232 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97845 1.0057 NaN 1 0 Median 1.1497 0.96709 NaN 1 0 Median 144250000 64249000 79999000 116440000 51728000 64713000 15783000 6908300 8874300 7562900 3452100 4110800 0 0 0 3325300 1663300 1662000 1136700 498070 638620 23866 1122 24875 125915;125916;125917;125918;125919;125920 127080;127081;127082;127083;127084;127085 127085 6 LYQYMLNAGLAK KLREELGLCERTFKRLYQYMLNAGLAKVVS FKRLYQYMLNAGLAKVVSLRLQEIHPECGP R L Y A K V 2 0 1 0 0 1 0 1 0 0 3 1 1 0 0 0 0 0 2 0 0 0 12 0 1383.7221 Q12789 Q12789 293 304 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 1.7783E-05 97.431 By matching By MS/MS 1 1 1.1423 1.1174 1.0989 2 Median NaN NaN NaN 0 0 Median 1.278 1.1087 NaN 1 0 Median 1.0211 1.1261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14999000 7335200 7663400 0 0 0 741230 237340 503890 14257000 7097900 7159500 0 0 0 0 0 0 0 0 0 23867 2758 24876 125921;125922 127086;127087 127087 2 LYQYYLDHLTGVGNNSEGGR HEYVLAVRMTSIQCKLYQYYLDHLTGVGNN LDHLTGVGNNSEGGRGKAGAKLFQDFQMLS K L Y G R G 0 1 2 1 0 1 1 4 1 0 3 0 0 0 0 1 1 0 3 1 0 0 20 0 2255.0607 P46100 P46100 1846 1865 ATRX Transcriptional regulator ATRX yes yes 3 0.0081516 30.428 By MS/MS 1 0.019037 0.019218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.019037 0.019218 NaN 1 1 Median NaN NaN NaN 0 0 Median 62199000 61181000 1018100 0 0 0 0 0 0 0 0 0 0 0 0 62199000 61181000 1018100 0 0 0 23868 2339 24877 125923 127088 127088 1 LYRPGSVAYVSR IGNTGGMLDNILASKLYRPGSVAYVSRSGG ASKLYRPGSVAYVSRSGGMSNELNNIISRT K L Y S R S 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 2 0 0 2 2 0 0 12 1 1366.7357 P53396 P53396 651 662 ACLY ATP-citrate synthase yes yes 2;3 1.1686E-15 152.55 By MS/MS By MS/MS By matching 2 4 1 1.1027 1.1106 26.925 7 Median 1.1027 1.2251 2.1134 2 0 Median 1.0828 1.0439 4.3843 4 3 Median 1.7955 2.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 259340000 118800000 140540000 130440000 60458000 69979000 124970000 56964000 68009000 3933000 1378000 2554900 0 0 0 0 0 0 0 0 0 23869 2467 24878 125924;125925;125926;125927;125928;125929;125930 127089;127090;127091;127092;127093;127094;127095;127096 127095 8 LYRPPPVLDALGR AAEVMGRLMEIYQEKLYRPPPVLDALGRVI EKLYRPPPVLDALGRVISESPPDQWEARCG K L Y G R V 1 2 0 1 0 0 0 1 0 0 3 0 0 0 3 0 0 0 1 1 0 0 13 1 1465.8405 Q92616 Q92616 1209 1221 GCN1L1 Translational activator GCN1 yes yes 2;3 0.00022091 80.706 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 5 1 1 1 2 0.73581 0.72321 35.291 12 Median 0.63984 0.68425 6.7464 2 0 Median 0.73202 0.72055 38.229 5 0 Median 0.64655 0.81675 NaN 1 0 Median 0.80159 0.72589 NaN 1 0 Median 0.92066 0.99595 NaN 1 0 Median 1.1473 1.007 62.085 2 0 Median 67565000 38300000 29265000 43870000 25767000 18103000 16958000 8812400 8145700 3325500 2062100 1263300 193790 107530 86260 2561500 1292700 1268900 655670 258540 397130 23870 3544 24879 125931;125932;125933;125934;125935;125936;125937;125938;125939;125940;125941;125942 127097;127098;127099;127100;127101;127102;127103;127104;127105 127097 9 LYRVEYAK ______________________________ MAESSDKLYRVEYAKSGRASCKKCSESIPK K L Y A K S 1 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 1 1040.5655 P09874;Q5VX84;Q5VX85 P09874 8 15 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 0.057513 55.531 By MS/MS 1 1.1245 1.2736 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1245 1.2736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4950100 2139100 2811100 0 0 0 0 0 0 4950100 2139100 2811100 0 0 0 0 0 0 0 0 0 23871 1922 24880 125943 127106 127106 1 LYSEDELPAEFK IHANCRIRRVYFSDRLYSEDELPAEFKLYL SDRLYSEDELPAEFKLYLPVQNKAKQ____ R L Y F K L 1 0 0 1 0 0 3 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 12 0 1439.682 Q9Y6A4 Q9Y6A4 171 182 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 8.6137E-05 92.538 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 2 0.88048 0.81287 12.263 6 Median 0.87476 0.81526 NaN 1 0 Median 0.72661 0.63428 NaN 1 0 Median 0.88624 0.83072 NaN 1 0 Median 0.98779 0.81048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93776 0.76464 16.104 2 0 Median 25533000 12373000 13160000 9046700 4388800 4657900 160580 85318 75265 15198000 7322700 7875600 354300 188300 166000 0 0 0 773120 387700 385420 23872 4486 24881 125944;125945;125946;125947;125948;125949 127107;127108;127109 127109 3 LYSESLAR DYLDQPCYETINRIKLYSESLARYGKSPYL ETINRIKLYSESLARYGKSPYLYPLYGLGE K L Y A R Y 1 1 0 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 8 0 937.4869 P31150;P50395;Q5SX87;Q5SX91 P50395 211 218 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2 0.0023383 113.7 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.0704 0.95716 81.043 4 Median 0.99827 0.95091 NaN 1 0 Median 1.1477 0.96346 NaN 1 0 Median 0.21425 0.20717 NaN 1 1 Median 1.4316 1.2025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106300000 82004000 24295000 13240000 6899800 6339700 23077000 11446000 11631000 69570000 63454000 6116400 412560 204200 208360 0 0 0 0 0 0 23873 2411;2201 24882 125950;125951;125952;125953;125954;125955;125956 127110;127111;127112;127113;127114;127115;127116;127117 127115 8 LYSEVAEER HLEQEQWALQQQRQRLYSEVAEERERLGQQ QQQRQRLYSEVAEERERLGQQAARQRAELE R L Y E R E 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1094.5244 Q9UPN4;I3L2X7 Q9UPN4 796 804 CEP131 Centrosomal protein of 131 kDa yes no 2 0.027065 51.346 By MS/MS 1 0.92672 0.7914 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92672 0.7914 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 878100 452140 425960 0 0 0 0 0 0 0 0 0 878100 452140 425960 0 0 0 0 0 0 23874 4355 24883 125957 127118 127118 1 LYSEVAEERER HLEQEQWALQQQRQRLYSEVAEERERLGQQ QRQRLYSEVAEERERLGQQAARQRAELEEL R L Y E R L 1 2 0 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 11 1 1379.6681 Q9UPN4;I3L2X7 Q9UPN4 796 806 CEP131 Centrosomal protein of 131 kDa yes no 3 0.026087 23.851 By MS/MS 1 0.49676 0.60417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49676 0.60417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1132300 698570 433770 0 0 0 0 0 0 1132300 698570 433770 0 0 0 0 0 0 0 0 0 23875 4355 24884 125958 127119 127119 1 LYSIILSAPIPEPK ______________________________ KLYSIILSAPIPEPKTKDDLEQLTTEIKKR K L Y P K T 1 0 0 0 0 0 1 0 0 3 2 1 0 0 3 2 0 0 1 0 0 0 14 0 1539.8912 A0A0C4DGE4;A0A286YF28;A0A0J9YW33;Q13277 A0A0C4DGE4 11 24 STX3 Syntaxin-3 yes no 2 0.0010085 52.278 By MS/MS 1 1.0594 1.0371 NaN 1 Median 1.0594 1.0371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2399800 1162800 1237100 2399800 1162800 1237100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23876 243 24885 125959 127120;127121 127121 2 LYSILGTTLKDEGK GGDTVAIGGVDGNVRLYSILGTTLKDEGKL RLYSILGTTLKDEGKLLEAKGPVTDVAYSH R L Y G K L 0 0 0 1 0 0 1 2 0 1 3 2 0 0 0 1 2 0 1 0 0 0 14 1 1536.8399 O75083 O75083 471 484 WDR1 WD repeat-containing protein 1 yes yes 2;3 2.2461E-08 161.62 By MS/MS By matching By MS/MS By matching 7 5 3 3 1.2053 1.1594 21.496 18 Median 1.2042 1.1374 32.939 7 0 Median 1.2072 1.1313 9.8263 5 0 Median 1.1851 1.237 1.7318 3 0 Median 1.1865 1.0955 12.03 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106380000 47160000 59223000 75609000 33507000 42102000 12321000 5542200 6779100 17055000 7441600 9613000 1398800 669630 729130 0 0 0 0 0 0 23877 1643 24886 125960;125961;125962;125963;125964;125965;125966;125967;125968;125969;125970;125971;125972;125973;125974;125975;125976;125977 127122;127123;127124;127125;127126;127127;127128;127129 127123 8 LYSILQGDSPTK LFENQTPAHVYYRWKLYSILQGDSPTKWRT RWKLYSILQGDSPTKWRTEDFRMFKNGSFW K L Y T K W 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 2 1 0 1 0 0 0 12 0 1320.6925 O15042 O15042 477 488 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 2.4033E-09 170.99 By MS/MS By matching By MS/MS By MS/MS 1 2 3 2 0.75899 0.67604 31.622 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77633 0.82913 NaN 1 0 Median 0.6305 0.5463 2.938 2 0 Median 0.79955 0.8156 53.26 3 0 Median 0.80337 0.67604 8.3147 2 0 Median 46164000 25801000 20363000 0 0 0 0 0 0 12294000 6993800 5299800 2345100 1332400 1012700 28357000 15757000 12601000 3168300 1718200 1450100 23878 1515 24887 125978;125979;125980;125981;125982;125983;125984;125985 127130;127131;127132;127133;127134;127135;127136 127131 7 LYSLALHPNAFK QQEKSPVNTKSLFKRLYSLALHPNAFKRLG FKRLYSLALHPNAFKRLGASLAFNNIYREF R L Y F K R 2 0 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 12 0 1372.7503 P78527 P78527 1063 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 9.0729E-08 131.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 6 5 2 1 0.95389 0.87903 42.427 22 Median 0.8353 0.82291 88.917 4 1 Median 1.324 1.1766 14.836 5 0 Linear 0.77229 0.84307 15.094 6 2 Median 1.1792 1.1409 17.88 5 0 Median 0.71452 0.7477 NaN 1 0 Median 1.1172 0.96716 NaN 1 0 Median 475220000 260630000 214590000 221300000 129090000 92212000 64427000 27577000 36850000 175270000 96435000 78834000 5852800 2569500 3283300 8136600 4846900 3289700 240520 120490 120030 23879 2647 24888 125986;125987;125988;125989;125990;125991;125992;125993;125994;125995;125996;125997;125998;125999;126000;126001;126002;126003;126004;126005;126006;126007;126008 127137;127138;127139;127140;127141;127142;127143;127144;127145;127146;127147;127148;127149;127150;127151;127152;127153;127154;127155;127156;127157;127158;127159;127160;127161 127139 24 LYSLALHPNAFKR QQEKSPVNTKSLFKRLYSLALHPNAFKRLG KRLYSLALHPNAFKRLGASLAFNNIYREFR R L Y K R L 2 1 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 13 1 1528.8514 P78527 P78527 1063 1075 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.8266E-06 118.18 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 3 1 1 2 1.0274 1.0316 21.912 11 Median 1.0274 1.0676 29.256 3 0 Median 1.5846 1.4764 NaN 1 0 Median 0.78884 0.91755 14.66 3 0 Plateau 1.1226 1.0837 NaN 1 0 Median 0.89553 1.0151 NaN 1 0 Median 1.2591 1.1141 10.873 2 0 Median 112820000 59710000 53106000 23592000 11859000 11733000 5110900 1920200 3190700 75281000 41502000 33779000 497960 199460 298500 7721300 3952900 3768400 612660 276630 336030 23880 2647 24889 126009;126010;126011;126012;126013;126014;126015;126016;126017;126018;126019 127162;127163;127164;127165;127166;127167;127168;127169;127170 127166 8 LYSLFLK FPPNIVESAAENMVKLYSLFLKYDATMIEI SAAENMVKLYSLFLKYDATMIEINPMVEDS K L Y L K Y 0 0 0 0 0 0 0 0 0 0 3 1 0 1 0 1 0 0 1 0 0 0 7 0 882.52149 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;Q5T9Q5;Q5T9Q8;A0A0U1RRI1 A0A2R8YDQ9 185 191 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.014908 73.039 By MS/MS By matching By matching 1 1 1 1.1266 1.0659 9.1045 3 Median 1.1266 1.0523 NaN 1 0 Median 1.4433 1.2395 NaN 1 0 Median 0.96019 1.0659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8255900 3672900 4583000 5944400 2785000 3159400 1606900 602410 1004500 704530 285480 419050 0 0 0 0 0 0 0 0 0 23881 379 24890 126020;126021;126022 127171;127172 127172 2 LYSLLFR ______________________________ AAATLTSKLYSLLFRRTSTFALTIIVGVMF K L Y F R R 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 1 0 0 0 7 0 910.52764 Q9UDW1 Q9UDW1 10 16 UQCR10 Cytochrome b-c1 complex subunit 9 yes yes 2 0.0026423 106.76 By MS/MS By matching 2 1 1.4041 1.2749 9.8686 3 Median 1.2572 1.2023 13.11 2 0 Median 1.5762 1.2749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27058000 10959000 16099000 13395000 5788400 7606300 13663000 5170600 8492400 0 0 0 0 0 0 0 0 0 0 0 0 23882 4254 24891 126023;126024;126025 127173;127174 127174 2 LYSNDIHAIANTYGIEAALR LPELFKYAEVLDLRRLYSNDIHAIANTYGI IHAIANTYGIEAALRVIEKEIKDVFAVYGI R L Y L R V 4 1 2 1 0 0 1 1 1 3 2 0 0 0 0 1 1 0 2 0 0 0 20 0 2204.1226 O95602;B9ZVN9 O95602 1600 1619 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 3.4563E-19 111.66 By MS/MS By matching 1 1 1.2302 1.1979 5.3788 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0529 1.1532 NaN 1 0 Median 1.4373 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8239500 3921200 4318400 0 0 0 0 0 0 8099500 3868700 4230800 139980 52462 87517 0 0 0 0 0 0 23883 1781 24892 126026;126027 127175;127176 127176 2 LYSPSQIGAFVLMK VRASNGDAWVEAHGKLYSPSQIGAFVLMKM KLYSPSQIGAFVLMKMKETAENYLGHTAKN K L Y M K M 1 0 0 0 0 1 0 1 0 1 2 1 1 1 1 2 0 0 1 1 0 0 14 0 1552.8323 P38646;A0A3B3ITI4 P38646 160 173 HSPA9 Stress-70 protein, mitochondrial yes no 2 4.7388E-08 111.06 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 1.0708 1.0811 18.926 7 Median 0.98674 0.91751 10.382 3 0 Median 1.2923 1.0811 NaN 1 0 Median 1.0708 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.301 1.3002 11.647 2 0 Median NaN NaN NaN 0 0 Median 74716000 35804000 38912000 45701000 22792000 22909000 14478000 6365300 8112900 11368000 5439400 5928500 0 0 0 3169500 1207800 1961700 0 0 0 23884 2277 24893 126028;126029;126030;126031;126032;126033;126034 127177;127178;127179;127180;127181;127182;127183;127184;127185;127186;127187;127188 127181 12 LYSQFLGK KLKPEYLQALPEMLKLYSQFLGKQPWFLGD ALPEMLKLYSQFLGKQPWFLGDKGLEKISA K L Y G K Q 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 8 0 954.51747 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7;E9PGV1 E9PHN7 137 144 GSTM2 Glutathione S-transferase Mu 2 yes no 2 0.017258 68.915 By MS/MS 2 0.48525 0.44791 37.748 2 Median 0.48525 0.44791 37.748 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66265000 49025000 17240000 66265000 49025000 17240000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23885 935 24894 126035;126036 127189;127190 127189 2 LYSTMVR VDLILATPPFSRLEKLYSTMVRFLSDRKNP PPFSRLEKLYSTMVRFLSDRKNPVCREMAV K L Y V R F 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 7 0 868.44767 O14497;H0Y488;A0A1B0GTU5 O14497 2147 2153 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.066709 36.185 By matching By MS/MS 1 1 0.93135 0.89433 33.39 2 Median 0.6761 0.70626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.283 1.1325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2948900 1737300 1211600 2125900 1335700 790230 0 0 0 0 0 0 823030 401630 421400 0 0 0 0 0 0 23886 1480 24895 126037;126038 127191 127191 1 LYSTWIGGSILASLDTFKK APKDVKIRISAPQERLYSTWIGGSILASLD WIGGSILASLDTFKKMWVSKKEYEEDGARS R L Y K K M 1 0 0 1 0 0 0 2 0 2 3 2 0 1 0 3 2 1 1 0 0 0 19 1 2099.1303 P42025;P61163 P61163 337 355 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 2;3 1.6161E-07 72.937 By MS/MS By matching 2 1 1.2697 1.1891 5.369 3 Median NaN NaN NaN 0 0 Median 1.2914 1.1661 2.7681 2 0 Median 1.1669 1.2715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16006000 6839400 9167000 0 0 0 15756000 6691100 9065200 250080 148250 101830 0 0 0 0 0 0 0 0 0 23887 2547;2304 24896 126039;126040;126041 127192;127193;127194;127195 127194 4 LYSVSYLLK RTPCEEILVKHVGSRLYSVSYLLKDKGEYT KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH R L Y L K D 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 2 0 0 2 1 0 0 9 0 1084.6168 P21333;Q60FE5;A0A087WWY3 P21333 2613 2621 FLNA Filamin-A no no 2 0.00073228 101.54 By MS/MS By matching By MS/MS By matching By matching 6 6 3 2 2 1.1447 1.0401 26.713 19 Median 1.2171 1.2034 14.999 6 0 Median 1.0227 0.90739 14.488 6 0 Median 1.1855 1.3097 42.409 3 0 Median 1.1593 1.0646 3.2915 2 0 Median 1.5143 1.5106 43.668 2 0 Median NaN NaN NaN 0 0 Median 204230000 96298000 107930000 93013000 41131000 51882000 96635000 48693000 47942000 11454000 5254300 6199400 2020500 913980 1106500 1107900 305220 802630 0 0 0 23888 2088;3120 24897 126042;126043;126044;126045;126046;126047;126048;126049;126050;126051;126052;126053;126054;126055;126056;126057;126058;126059;126060 127196;127197;127198;127199;127200;127201;127202;127203;127204 127197 9 LYSVVSQLIR GPGPPIKYQYAELGKLYSVVSQLIRCCNVS AELGKLYSVVSQLIRCCNVSSRMQSSINGN K L Y I R C 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 1 2 0 0 10 0 1176.6867 Q93008;O00507 Q93008 2228 2237 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.00028636 126.41 By MS/MS By MS/MS By matching 2 3 2 1.1468 1.077 8.4921 7 Median 1.1098 1.0767 0.039082 2 0 Median 1.3459 1.1496 7.7939 3 0 Median 0.9484 1.0736 16.806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47016000 20835000 26182000 17444000 7715100 9728500 26177000 11307000 14870000 3395900 1812500 1583400 0 0 0 0 0 0 0 0 0 23889 3573 24898 126061;126062;126063;126064;126065;126066;126067 127205;127206;127207;127208;127209 127209 5 LYTAWAYQHELEETTVPEIQR RAGRAGRVAAGKCFRLYTAWAYQHELEETT YQHELEETTVPEIQRTSLGNVVLLLKSLGI R L Y Q R T 2 1 0 0 0 2 4 0 1 1 2 0 0 0 1 0 3 1 2 1 0 0 21 0 2576.2547 O60231;Q5SQH5;A0A140T8Y5 O60231 737 757 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 3 4.1639E-05 37.672 By MS/MS By matching 1 1 0.98044 0.96427 19.244 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0091 1.1048 NaN 1 0 Median 0.95256 0.84159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2517900 1282800 1235100 0 0 0 0 0 0 2332000 1207400 1124600 185890 75394 110500 0 0 0 0 0 0 23890 1605 24899 126068;126069 127210;127211 127211 2 LYTDFDEIRQEIENETER VEAEEWGKFLHTKNKLYTDFDEIRQEIENE DFDEIRQEIENETERISGNNKGVSPEPIHL K L Y E R I 0 2 1 2 0 1 5 0 0 2 1 0 0 1 0 0 2 0 1 0 0 0 18 1 2299.0604 O00429;F8VZ52;B4DDQ3;B4DPZ9;F8VUJ9 O00429 100 117 DNM1L Dynamin-1-like protein yes no 3 2.3733E-06 58.83 By MS/MS By matching 1 1 1.0556 0.99104 11.018 2 Median NaN NaN NaN 0 0 Median 1.0828 1.0713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0291 0.91677 NaN 1 0 Median 8564400 3403000 5161400 0 0 0 8413900 3331100 5082800 0 0 0 0 0 0 0 0 0 150530 71928 78604 23891 1463 24900 126070;126071 127212;127213 127212 2 LYTGKPNLVNGLQAR NTLQSFRDHTFLYEKLYTGKPNLVNGLQAR LYTGKPNLVNGLQARTFGIWTLLSSVIRCL K L Y A R T 1 1 2 0 0 1 0 2 0 0 3 1 0 0 1 0 1 0 1 1 0 0 15 1 1642.9155 Q9UKR5 Q9UKR5 37 51 C14orf1 Probable ergosterol biosynthetic protein 28 yes yes 2;3 5.2872E-05 76.588 By MS/MS By MS/MS 1 2 1.3422 1.185 28.299 3 Median 0.86998 0.85309 NaN 1 0 Median 1.5093 1.3326 16.599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36954000 16782000 20171000 12206000 6438000 5768200 24747000 10344000 14403000 0 0 0 0 0 0 0 0 0 0 0 0 23892 4315 24901 126072;126073;126074 127214;127215;127216;127217;127218 127215 5 LYTGLEYDLSR VTNLVPSMVSLEETKLYTGLEYDLSRENHR EETKLYTGLEYDLSRENHREVIATVIRKLL K L Y S R E 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 1 1 0 2 0 0 0 11 0 1328.6612 Q14997 Q14997 851 861 PSME4 Proteasome activator complex subunit 4 yes yes 2 0.013325 37.476 By MS/MS 1 1.5934 1.3258 NaN 1 Median NaN NaN NaN 0 0 Median 1.5934 1.3258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1463700 486330 977370 0 0 0 1463700 486330 977370 0 0 0 0 0 0 0 0 0 0 0 0 23893 2906 24902 126075 127219 127219 1 LYTLQDK RVTAIHIDPATHRQKLYTLQDKAQVADVVV DPATHRQKLYTLQDKAQVADVVVSRWLRVT K L Y D K A 0 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 879.47018 P49327;A0A0U1RQF0 P49327 1066 1072 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 8.499E-05 121.29 By MS/MS By MS/MS 2 3 1.3139 1.1681 18.903 5 Median 0.95029 0.92877 12.905 2 0 Median 1.4907 1.3204 7.0955 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41926000 17425000 24502000 7740000 3724400 4015600 34186000 13700000 20486000 0 0 0 0 0 0 0 0 0 0 0 0 23894 2377 24903 126076;126077;126078;126079;126080 127220;127221;127222 127221 3 LYTLVLTDPDAPSR NRPTSISWDGLDSGKLYTLVLTDPDAPSRK KLYTLVLTDPDAPSRKDPKYREWHHFLVVN K L Y S R K 1 1 0 2 0 0 0 0 0 0 3 0 0 0 2 1 2 0 1 1 0 0 14 0 1559.8195 P30086 P30086 63 76 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 5.6355E-08 138.71 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0598 0.88765 15.344 5 Median 0.93214 0.88765 NaN 1 0 Median 1.1303 0.94751 10.363 2 0 Median 0.78339 0.75245 NaN 1 0 Median 1.3621 1.124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 144210000 76393000 67816000 112110000 60023000 52092000 11194000 4910700 6282900 20033000 11095000 8938300 867940 364440 503500 0 0 0 0 0 0 23895 2188 24904 126081;126082;126083;126084;126085 127223;127224;127225;127226;127227;127228;127229;127230;127231;127232;127233;127234;127235;127236;127237;127238 127224 16 LYTLVLTDPDAPSRK NRPTSISWDGLDSGKLYTLVLTDPDAPSRK LYTLVLTDPDAPSRKDPKYREWHHFLVVNM K L Y R K D 1 1 0 2 0 0 0 0 0 0 3 1 0 0 2 1 2 0 1 1 0 0 15 1 1687.9145 P30086 P30086 63 77 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3 4.942E-06 85.457 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.89762 0.86144 9.8964 6 Median 0.73605 0.76561 2.1466 2 1 Median 1.0431 0.94508 2.3319 2 0 Median 0.79449 0.82664 NaN 1 0 Median 1.0141 0.89771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97403000 56219000 41184000 86263000 50232000 36031000 3712400 1693300 2019100 7255800 4212600 3043200 171680 80961 90720 0 0 0 0 0 0 23896 2188 24905 126086;126087;126088;126089;126090;126091 127239;127240;127241;127242;127243;127244;127245;127246 127239 8 LYTLVLTDPDAPSRKDPK NRPTSISWDGLDSGKLYTLVLTDPDAPSRK LVLTDPDAPSRKDPKYREWHHFLVVNMKGN K L Y P K Y 1 1 0 3 0 0 0 0 0 0 3 2 0 0 3 1 2 0 1 1 0 0 18 2 2028.0892 P30086 P30086 63 80 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 3 6.9391E-05 44.005 By MS/MS By MS/MS 1 1 0.72155 0.69329 5.8799 2 Median 0.67875 0.72272 NaN 1 0 Median 0.76705 0.66506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17307000 10175000 7131900 15612000 9280300 6331500 1695200 894850 800330 0 0 0 0 0 0 0 0 0 0 0 0 23897 2188 24906 126092;126093 127247;127248;127249;127250 127248 4 LYTLVTYVPVTTFK RLSRKRNEDEDSPNKLYTLVTYVPVTTFKN KLYTLVTYVPVTTFKNLQTVNVDEN_____ K L Y F K N 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 4 0 2 3 0 0 14 0 1643.9174 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8 P62899 102 115 RPL31 60S ribosomal protein L31 yes no 2 0.00041385 70.977 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 3 3 1.0459 0.94288 14.296 13 Median 1.0026 0.9436 2.9941 2 0 Median 1.0663 0.89442 0.0095886 2 0 Median 0.95244 0.90948 2.1346 2 0 Median 1.1427 0.94288 NaN 1 0 Median 0.97069 1.0401 11.014 3 0 Median 1.2694 1.0435 23.627 3 0 Median 167370000 83388000 83986000 62626000 32102000 30524000 29768000 14278000 15489000 52889000 26696000 26194000 843350 393860 449500 6606400 3474600 3131800 14641000 6443900 8197600 23898 2607 24907 126094;126095;126096;126097;126098;126099;126100;126101;126102;126103;126104;126105;126106 127251;127252;127253;127254;127255;127256;127257;127258;127259;127260;127261;127262;127263;127264;127265;127266;127267 127252 17 LYTTMPVAK VQQQAQLSTIRSFLKLYTTMPVAKLAGFLD IRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ K L Y A K L 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 2 0 1 1 0 0 9 0 1022.5471 B0QY89;Q9Y262;B0QY90 B0QY89 509 517 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00081314 96.492 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.94358 0.87197 16.117 4 Median 0.84797 0.7922 NaN 1 0 Median 1.1473 0.95977 NaN 1 0 Median 1.0243 1.054 NaN 1 0 Median 0.86923 0.74713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38001000 19487000 18514000 20367000 11091000 9276000 14373000 6582800 7789900 2582500 1435600 1146900 678550 377580 300970 0 0 0 0 0 0 23899 554 24908 126107;126108;126109;126110 127268;127269;127270;127271;127272 127271 5 LYTVDLESGLHYLLR ENSEIVVWREFDKSKLYTVDLESGLHYLLR LYTVDLESGLHYLLRVELAAHKSLAGAELK K L Y L R V 0 1 0 1 0 0 1 1 1 0 5 0 0 0 0 1 1 0 2 1 0 0 15 0 1790.9567 Q6ZRP7;H0Y430 Q6ZRP7 322 336 QSOX2 Sulfhydryl oxidase 2;Sulfhydryl oxidase yes no 2;3 4.8477E-05 66.533 By MS/MS 2 0.70817 0.6123 64.636 2 Median NaN NaN NaN 0 0 Median 0.70817 0.6123 64.636 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37468000 15305000 22163000 0 0 0 37468000 15305000 22163000 0 0 0 0 0 0 0 0 0 0 0 0 23900 3198 24909 126111;126112 127273;127274 127273 1 LYTVEYLSNMVGGR DKVVNDPRPQHKYNKLYTVEYLSNMVGGRK KLYTVEYLSNMVGGRKTLYNNQPIDFLKKM K L Y G R K 0 1 1 0 0 0 1 2 0 0 2 0 1 0 0 1 1 0 2 2 0 0 14 0 1600.7919 K7ES02;Q13867;K7ESE8;J3KSD8 K7ES02 281 294 BLMH Bleomycin hydrolase yes no 2 1.4078E-08 127.42 By MS/MS By MS/MS 1 2 1.5303 1.3332 26.009 3 Plateau 1.3905 1.3379 NaN 1 0 Median 1.2682 1.0653 31.729 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23494000 9834900 13659000 8948900 3727200 5221700 14545000 6107700 8437200 0 0 0 0 0 0 0 0 0 0 0 0 23901 1400 24910 126113;126114;126115 127275;127276;127277;127278;127279 127278 5 LYTVVPR QSLIGFFETEMAAYRLYTVVPRLVKFVDIL ETEMAAYRLYTVVPRLVKFVDILTNWYVRM R L Y P R L 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 2 0 0 7 0 846.49634 P41252;A0A0A0MSX9;J3KR24 P41252 716 722 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0026423 106.76 By MS/MS By MS/MS 1 1 1.146 1.0292 3.4891 2 Median 1.0409 1.0041 NaN 1 0 Median 1.2616 1.0549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19092000 8588000 10504000 8360400 3866500 4494000 10731000 4721500 6009800 0 0 0 0 0 0 0 0 0 0 0 0 23902 2302 24911 126116;126117 127280;127281;127282;127283 127281 4 LYTWVEWVK DANFVEAMADAGILRLYTWVEWVKEMVANW DAGILRLYTWVEWVKEMVANWDSLRSGPAS R L Y V K E 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 2 1 2 0 0 9 0 1222.6386 Q9P2J5 Q9P2J5 767 775 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.010839 47.849 By MS/MS By matching By matching By matching 1 2 1 1 1.1544 1.0945 12.062 5 Median 1.1544 1.1262 NaN 1 0 Median 1.0844 0.94914 5.2851 2 0 Median NaN NaN NaN 0 0 Median 1.2678 1.0945 NaN 1 0 Median 1.2028 1.2475 NaN 1 0 Median NaN NaN NaN 0 0 Median 8242200 3970000 4272300 4949000 2304200 2644800 2788900 1422500 1366400 0 0 0 221510 97487 124020 282820 145850 136960 0 0 0 23903 4224 24912 126118;126119;126120;126121;126122 127284 127284 1 LYVDAAVHGTTK HQVYNVLLGLLSRAKLYVDAAVHGTTKLVP RAKLYVDAAVHGTTKLVPYFSFMTYCLISK K L Y T K L 2 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 2 0 1 2 0 0 12 0 1273.6667 Q70CQ2;H7C183 Q70CQ2 2740 2751 USP34 Ubiquitin carboxyl-terminal hydrolase 34 yes no 3 0.00039904 52.555 By MS/MS By matching 1 1 0.55674 0.57097 41.757 2 Median 0.77701 0.76709 NaN 1 0 Median 0.39891 0.42499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5844500 3669400 2175100 2020400 947730 1072700 3824100 2721700 1102400 0 0 0 0 0 0 0 0 0 0 0 0 23904 3207 24913 126123;126124 127285;127286 127285 2 LYVELHR LTQTFRAREQLAAVRLYVELHRGEELGGGQ REQLAAVRLYVELHRGEELGGGQDPVQLLS R L Y H R G 0 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 1 1 0 0 7 0 928.51305 E9PJ81;E9PRQ7;Q04323;A0A087WTZ5 E9PJ81 241 247 UBXN1 UBX domain-containing protein 1 yes no 2 0.0051345 98.133 By MS/MS By MS/MS 1 1 1.4912 1.3893 20.057 2 Median 1.61 1.601 NaN 1 1 Median 1.3811 1.2056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16691000 6383000 10308000 8656700 2884200 5772400 8034000 3498800 4535200 0 0 0 0 0 0 0 0 0 0 0 0 23905 942 24914 126125;126126 127287;127288 127288 2 LYVGSLHFNITEDMLR AMANNLQKGSAGPMRLYVGSLHFNITEDML YVGSLHFNITEDMLRGIFEPFGRIESIQLM R L Y L R G 0 1 1 1 0 0 1 1 1 1 3 0 1 1 0 1 1 0 1 1 0 0 16 0 1906.9611 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;A0A0U1RQW2;G3V5Z6;H0YJJ3;G3XAP0;Q86U06;G3V546 Q14498 252 267 RBM39;RBM23 RNA-binding protein 39;Probable RNA-binding protein 23 yes no 3 0.00012915 46.3 By MS/MS By matching 1 1 1.4247 1.2303 5.748 2 Median NaN NaN NaN 0 0 Median 1.482 1.2813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3697 1.1813 NaN 1 0 Median 4603500 2226700 2376700 0 0 0 1875400 940210 935170 0 0 0 0 0 0 0 0 0 2728100 1286500 1441600 23906 2879 24915 126127;126128 127289;127290 127290 2 LYVHEAVK QAATGFLVDPVRNQRLYVHEAVKAGVVGPE DPVRNQRLYVHEAVKAGVVGPELHEQLLSA R L Y V K A 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 957.52837 Q15149;H0YDN1 Q15149 3544 3551 PLEC Plectin yes no 2 0.014044 51.854 By matching By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 1 2 1.4915 1.3312 8.3778 7 Median 1.2159 1.2062 NaN 1 0 Median 1.4915 1.2928 NaN 1 0 Median 1.1445 1.2608 NaN 1 0 Median 1.4941 1.3732 NaN 1 0 Median 1.486 1.5691 NaN 1 0 Median 1.5961 1.3506 2.0532 2 0 Median 7910600 3540000 4370600 1299300 582710 716620 684860 350500 334360 684640 316440 368200 392900 163270 229630 2563600 1123800 1439800 2285300 1003300 1282000 23907 2933 24916 126129;126130;126131;126132;126133;126134;126135 127291;127292;127293 127291 3 LYVIYKVPQVR LSILRNPVTNKKHYRLYVIYKVPQVRVLDF KHYRLYVIYKVPQVRVLDFQKVKLKERQEA R L Y V R V 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 2 3 0 0 11 1 1376.818 P09661;H0YMA0;H0YKK0 P09661 133 143 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 0.00015257 101.99 By MS/MS By MS/MS By MS/MS 2 2 1 0.96224 0.99677 5.4541 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95633 0.99132 0.77468 2 0 Median 1.2043 1.066 7.2408 2 0 Median 0.93037 0.98717 NaN 1 0 Median NaN NaN NaN 0 0 Median 34979000 17082000 17897000 0 0 0 0 0 0 10072000 5197600 4873900 3239900 1460700 1779200 21667000 10424000 11244000 0 0 0 23908 1920 24917 126136;126137;126138;126139;126140 127294;127295;127296;127297;127298;127299;127300;127301;127302 127298 9 LYVLQGGLAQQEWR SPLSGEGGSFVDACRLYVLQGGLAQQEWRV RLYVLQGGLAQQEWRVPELLHRLLKYLEPK R L Y W R V 1 1 0 0 0 3 1 2 0 0 3 0 0 0 0 0 0 1 1 1 0 0 14 0 1659.8733 Q14997 Q14997 1465 1478 PSME4 Proteasome activator complex subunit 4 yes yes 2 0.0001198 83 By MS/MS 1 1.0107 0.96437 NaN 1 Median 1.0107 0.96437 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5122800 2879600 2243200 5122800 2879600 2243200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23909 2906 24918 126141 127303 127303 1 LYVPVKEYPDFNFVGR ELPDAVGPIVQLQEKLYVPVKEYPDFNFVG YVPVKEYPDFNFVGRILGPRGLTAKQLEAE K L Y G R I 0 1 1 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 2 3 0 0 16 1 1941.9989 Q96PU8;F5GXS8;F5GYM3;F5H5U6;F5H8C8 Q96PU8 86 101 QKI Protein quaking yes no 3 0.00076118 37.092 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.81452 0.76529 10.107 5 Median 0.81452 0.87269 NaN 1 0 Median 0.80866 0.76529 NaN 1 0 Median 0.57984 0.6607 NaN 1 0 Median 0.89118 0.78265 3.4362 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29083000 16701000 12382000 7696800 3808800 3888000 406650 238180 168470 16801000 10220000 6581300 4178800 2434500 1744400 0 0 0 0 0 0 23910 3715 24919 126142;126143;126144;126145;126146 127304;127305;127306 127305 3 LYVSNLGIGHTR MGLVNHVFTEDNLKKLYVSNLGIGHTRYAT LKKLYVSNLGIGHTRYATTGKCELENCQPF K L Y T R Y 0 1 1 0 0 0 0 2 1 1 2 0 0 0 0 1 1 0 1 1 0 0 12 0 1328.7201 Q06203;D6RCC8 Q06203 82 93 PPAT Amidophosphoribosyltransferase yes no 3 0.000429 51.211 By MS/MS By MS/MS 2 1 1.2033 0.97565 20.48 3 Plateau 1.1765 1.1349 21.387 2 0 Median 1.0601 0.89348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22163000 9655800 12507000 14461000 6375700 8084900 7702500 3280100 4422400 0 0 0 0 0 0 0 0 0 0 0 0 23911 2722 24920 126147;126148;126149 127307;127308;127309 127308 2 LYVYDLSK ______________________________ PNLYPVKLYVYDLSKGLARRLSPIMLGKQL K L Y S K G 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 1 0 0 8 0 999.5277 Q6ICB0 Q6ICB0 11 18 DESI1 Desumoylating isopeptidase 1 yes yes 2 0.0095557 60.59 By MS/MS 1 1.6246 1.3978 NaN 1 Median NaN NaN NaN 0 0 Median 1.6246 1.3978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2846800 935980 1910800 0 0 0 2846800 935980 1910800 0 0 0 0 0 0 0 0 0 0 0 0 23912 3139 24921 126150 127310 127310 1 LYYDGEWYIR KLEKHLHSARSEEGRLYYDGEWYIRGQTIC SEEGRLYYDGEWYIRGQTICIDKKDECPTS R L Y I R G 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 1 3 0 0 0 10 0 1376.6401 Q5PSV4;H0YHD0 Q5PSV4 261 270 BRMS1L Breast cancer metastasis-suppressor 1-like protein yes no 2 0.0025713 59.8 By MS/MS 1 1.2908 1.3996 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2908 1.3996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3148500 1394800 1753700 0 0 0 0 0 0 3148500 1394800 1753700 0 0 0 0 0 0 0 0 0 23913 3066 24922 126151 127311;127312 127311 2 LYYDTDYGSK EASVDPSLSWGQRKKLYYDTDYGSKSRGRQ GQRKKLYYDTDYGSKSRGRQSQQEAEEEER K L Y S K S 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 1 0 3 0 0 0 10 0 1223.5346 Q9NQZ2 Q9NQZ2 135 144 UTP3 Something about silencing protein 10 yes yes 2 0.0096168 44.98 By MS/MS By matching 2 1 1.0063 0.84013 20.099 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9533 0.95532 26.417 2 0 Median 1.0063 0.84013 NaN 1 0 Median 14450000 7001000 7449100 0 0 0 0 0 0 0 0 0 0 0 0 12379000 5826400 6552300 2071400 1174600 896810 23914 4071 24923 126152;126153;126154 127313 127313 1 LYYLGMPYGSR QFVQKTDESGPHSHRLYYLGMPYGSRENSL HSHRLYYLGMPYGSRENSLLYSE_______ R L Y S R E 0 1 0 0 0 0 0 2 0 0 2 0 1 0 1 1 0 0 3 0 0 0 11 0 1318.638 M0R0I1;M0R3C4;M0R2G6;M0R2A8;Q86TI2 M0R0I1 101 111 DPP9 Dipeptidyl peptidase 9 yes no 2 0.00019975 96.331 By MS/MS By matching 1 1 0.91375 0.8207 4.6247 2 Median 0.85581 0.84798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97562 0.79429 NaN 1 0 Median 7492000 3291300 4200700 7290900 3196400 4094500 0 0 0 0 0 0 0 0 0 0 0 0 201100 94870 106230 23915 1428 24924 126155;126156 127314;127315 127315 2 LYYVCTAPHCGHR VFFQSHSARAEDAMRLYYVCTAPHCGHRWT MRLYYVCTAPHCGHRWTE____________ R L Y H R W 1 1 0 0 2 0 0 1 2 0 1 0 0 0 1 0 1 0 2 1 0 0 13 0 1632.729 P36954 P36954 110 122 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes yes 4 0.03913 20.663 By MS/MS 1 1.1603 0.97928 NaN 1 Median NaN NaN NaN 0 0 Median 1.1603 0.97928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1003800 395860 607960 0 0 0 1003800 395860 607960 0 0 0 0 0 0 0 0 0 0 0 0 23916 2264 24925 126157 127316 127316 0 MAAADSVQQR RKVELSESEEDKGGKMAAADSVQQRRQYRR DKGGKMAAADSVQQRRQYRRQNQQSSSDSG K M A Q R R 3 1 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 10 0 1075.508 M0R088;E9PCT1;A9Z1X7;Q8IYB3 M0R088 432 441 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2 0.0010092 88.948 By MS/MS 2 1.341 1.1623 NaN 1 Median NaN NaN NaN 0 0 Median 1.341 1.1623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1347800 606150 741640 0 0 0 1347800 606150 741640 0 0 0 0 0 0 0 0 0 0 0 0 23917 553 24926 126158;126159 127317;127318 127317 2 MAADDVEEYMIERPEPEFQDLNEK EKKSVEVNFTESLLRMAADDVEEYMIERPE MIERPEPEFQDLNEKARALKQILSKIPDEI R M A E K A 2 1 1 3 0 1 6 0 0 1 1 1 2 1 2 0 0 0 1 1 0 0 24 1 2897.2735 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J363 Q9BUL8 83 106 PDCD10 Programmed cell death protein 10 yes no 3 0.0012775 26.21 By MS/MS By matching 1 1 0.69633 0.6934 0.098937 2 Median 0.66006 0.69292 NaN 1 0 Median 0.73458 0.69389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4858500 2581900 2276600 4356100 2312200 2044000 502380 269770 232610 0 0 0 0 0 0 0 0 0 0 0 0 23918 3841 24927 126160;126161 127319 127319 1 MAAETLLSSLLGLLLLGLLLPASLTGGVGSLNLEELSEMR ______________________________ GGVGSLNLEELSEMRYGIEILPLPVMGGQS - M A M R Y 3 1 1 0 0 0 4 5 0 0 15 0 2 0 1 5 2 0 0 1 0 0 40 0 4094.2622 B4E321;Q13438;F8VWQ2;F8W0R2;F8W1N0;F8VZI7;F8W1V2 B4E321 1 40 OS9 Protein OS-9 yes no 5 0.070437 8.1129E-12 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1249100 0 1249100 1249100 0 1249100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23919 615 24928 126162;126163 127320;127321 127320 2 MAAHTMGNATVGR DAASYICEAAFDEVKMAAHTMGNATVGRRY VKMAAHTMGNATVGRRYLWLKDCKINLASK K M A G R R 3 1 1 0 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 1 0 0 13 0 1315.6125 P42166 P42166 638 650 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 4.18E-06 95.417 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 5 3 2 2 1.0439 1.0033 36.837 13 Median NaN NaN NaN 0 0 Median 0.34179 0.3047 NaN 1 0 Median 1.0249 1.0074 18.226 5 0 Median 1.1599 0.99952 12.202 3 0 Median 0.84967 0.90393 34.856 2 0 Median 1.155 0.97945 6.2907 2 0 Median 44420000 21732000 22687000 0 0 0 482490 320890 161600 34216000 16895000 17321000 6363500 2914000 3449500 2079100 1048000 1031000 1279100 554720 724390 23920 2306 24929 126164;126165;126166;126167;126168;126169;126170;126171;126172;126173;126174;126175;126176 127322;127323;127324;127325;127326;127327;127328;127329;127330 127323 9 MAALEVYVR DVLPNFFYHSNQVVRMAALEVYVRRAYIAY SNQVVRMAALEVYVRRAYIAYELNSVQHRQ R M A V R R 2 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 2 0 0 9 0 1050.5532 Q13085 Q13085 1147 1155 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.006443 54.549 By MS/MS 1 1.4218 1.18 NaN 1 Median NaN NaN NaN 0 0 Median 1.4218 1.18 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1380200 531470 848680 0 0 0 1380200 531470 848680 0 0 0 0 0 0 0 0 0 0 0 0 23921 2784 24930 126177 127331;127332 127331 2 MADDVVAIESEVK ALQQKIMESLPQIQRMADDVVAIESEVKSM QRMADDVVAIESEVKSMEKRVSKIKTILLS R M A V K S 2 0 0 2 0 0 2 0 0 1 0 1 1 0 0 1 0 0 0 3 0 0 13 0 1404.6806 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3888 3900 SYNE2 Nesprin-2 yes no 2 8.0279E-06 122.51 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.94047 0.9356 27.764 4 Median NaN NaN NaN 0 0 Median 1.0561 1.0184 NaN 1 0 Median 0.84761 0.90638 NaN 1 0 Median 1.0435 0.96575 NaN 1 0 Median 0.52765 0.5569 NaN 1 0 Median NaN NaN NaN 0 0 Median 16761000 8747800 8013100 2471300 1024200 1447100 715370 396730 318640 10741000 5789800 4951300 192970 93751 99217 2640100 1443300 1196800 0 0 0 23922 3521 24931 126178;126179;126180;126181;126182 127333 127333 1 MADEDALR RLKDLEDKEKKENKKMADEDALRKIRAVEE EKKENKKMADEDALRKIRAVEEQIEYLQKK K M A L R K 2 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 919.40693 Q5VTR2 Q5VTR2 695 702 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.013601 52.716 By MS/MS 1 1.0325 0.89291 NaN 1 Median NaN NaN NaN 0 0 Median 1.0325 0.89291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1442700 695090 747650 0 0 0 1442700 695090 747650 0 0 0 0 0 0 0 0 0 0 0 0 23923 3112 24932 126183 127334 127334 1 MADFHKEEMDDQDKDK QSPKRYKLRDDFEKKMADFHKEEMDDQDKD ADFHKEEMDDQDKDKAKGRKESEFDDEPKF K M A D K A 1 0 0 5 0 1 2 0 1 0 0 3 2 1 0 0 0 0 0 0 0 0 16 2 1980.8193 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 422 437 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3;4 4.3296E-05 64.454 By matching By MS/MS By matching By matching By MS/MS 1 2 3 3 2 1.1773 1.219 12.507 11 Median 1.1231 1.1772 NaN 1 0 Median 1.2568 1.1937 2.3854 2 0 Median 1.1773 1.4352 9.445 3 0 Median 1.313 1.3446 20.878 3 0 Median 1.0981 1.2242 3.9585 2 0 Median NaN NaN NaN 0 0 Median 18396000 8017400 10379000 1048600 394670 653980 6498800 2871500 3627300 3423800 1559800 1864000 3801800 1582600 2219300 3623200 1608900 2014300 0 0 0 23924 439 24933 126184;126185;126186;126187;126188;126189;126190;126191;126192;126193;126194 127335;127336;127337 127337 3 MADHWETAPR GKRNIHGRKLKEINKMADHWETAPRHMMRL KEINKMADHWETAPRHMMRLDIRSLLQDAA K M A P R H 2 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 10 0 1212.5346 P49750;F8VU51;H0YIQ2;H0YI23;U3KQT9 P49750 1983 1992 YLPM1 YLP motif-containing protein 1 yes no 3 0.048412 32.523 By MS/MS By matching 1 1 1.0016 1.079 19.296 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1143 1.2367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90028 0.94137 NaN 1 0 Median NaN NaN NaN 0 0 Median 3511800 1849500 1662300 0 0 0 0 0 0 1766400 872550 893860 0 0 0 1745400 976940 768480 0 0 0 23925 2395 24934 126195;126196 127338 127338 0 MADIEYR RVDFPSSVRIHLLTKMADIEYRLSVGTNEK VRIHLLTKMADIEYRLSVGTNEKIQLSSLI K M A Y R L 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 7 0 896.4062 P40937 P40937 305 311 RFC5 Replication factor C subunit 5 yes yes 2 0.010865 81.297 By matching By MS/MS By matching 2 1 1 0.96352 0.88624 26.639 4 Median NaN NaN NaN 0 0 Median 1.2457 1.1237 33.809 2 0 Median 0.90193 0.8877 NaN 1 0 Median 0.87783 0.78007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5686700 2954300 2732400 0 0 0 1604700 795730 809000 2865300 1534800 1330400 1216700 623710 592970 0 0 0 0 0 0 23926 2293 24935 126197;126198;126199;126200 127339 127339 1 MADKDGDLIATK FNYKQMMVRDERRFKMADKDGDLIATKEEF RFKMADKDGDLIATKEEFTAFLHPEEYDYM K M A T K E 2 0 0 3 0 0 0 1 0 1 1 2 1 0 0 0 1 0 0 0 0 0 12 1 1276.6333 O43852 O43852 162 173 CALU Calumenin yes yes 3 0.00049539 51.612 By MS/MS By MS/MS 2 1 0.97129 0.90718 25.249 3 Median 1.1399 1.1114 28.707 2 0 Median 0.94864 0.85684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10651000 5038300 5612700 5173900 2287900 2885900 5477200 2750400 2726800 0 0 0 0 0 0 0 0 0 0 0 0 23927 1598 24936 126201;126202;126203 127340;127341;127342 127341 3 MADPQSIQESQNLSMFLANHNK NDHSAYKRAAQFLRKMADPQSIQESQNLSM QESQNLSMFLANHNKITQSLQQQLEVISGY K M A N K I 2 0 3 1 0 3 1 0 1 1 2 1 2 1 1 3 0 0 0 0 0 0 22 0 2502.1631 Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 198 219 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 3 0.0061941 22.636 By matching By MS/MS 1 1 0.73768 0.73261 4.8486 2 Median NaN NaN NaN 0 0 Median 0.83053 0.75816 NaN 1 0 Median 0.65521 0.70791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5959100 3218100 2741100 0 0 0 222300 126280 96021 5736800 3091800 2645100 0 0 0 0 0 0 0 0 0 23928 3224 24937 126204;126205 127343;127344 127344 2 MADSEIPR AIKFVEGLIVTLSPRMADSEIPRRQEHDIS IVTLSPRMADSEIPRRQEHDISLDRIPRDH R M A P R R 1 1 0 1 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 8 0 917.42767 Q92797;A0A087WUE9;M0R3C7 Q92797 198 205 SYMPK Symplekin yes no 2 0.0035542 89.142 By MS/MS By matching 1 1 0.76594 0.74403 1.1634 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68403 0.75017 NaN 1 0 Median 0.85767 0.73793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3103500 1866400 1237100 0 0 0 0 0 0 2568900 1573400 995500 534570 292940 241630 0 0 0 0 0 0 23929 3558 24938 126206;126207 127345;127346 127346 2 MAEAELVQEGK RKGHILELLTEVTRRMAEAELVQEGKARKT VTRRMAEAELVQEGKARKTNPEIQSTLRKR R M A G K A 2 0 0 0 0 1 3 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1203.5805 P31944 P31944 213 223 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 1.3052E-18 155.42 By MS/MS By MS/MS 7 2 0.11297 0.098227 120.28 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.16023 0.1291 128.99 4 4 Median NaN NaN NaN 0 0 Median 0.088699 0.072301 NaN 1 1 Median 26822000 23890000 2932300 0 0 0 0 0 0 0 0 0 19923000 17445000 2478200 0 0 0 6899100 6445000 454140 23930 2209 24939;24940 126208;126209;126210;126211;126212;126213;126214;126215;126216 127347;127348;127349;127350;127351;127352;127353;127354;127355 127352 950 9 MAEDELFNR EGNPYRRIWKISCWRMAEDELFNRYERAIY KISCWRMAEDELFNRYERAIYAALSGNLKQ R M A N R Y 1 1 1 1 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 9 0 1123.4968 P57740 P57740 414 422 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.0004831 121.62 By matching By MS/MS By MS/MS 1 1 2 1.0458 0.95263 9.3937 4 Median NaN NaN NaN 0 0 Median 1.0082 0.89233 NaN 1 0 Median 1.0233 1.0872 NaN 1 0 Median 1.1234 0.95263 7.6454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11960000 5465300 6494900 0 0 0 560360 275090 285270 9020800 4065300 4955500 2379100 1124900 1254200 0 0 0 0 0 0 23931 2518 24941 126217;126218;126219;126220 127356;127357;127358;127359 127357 4 MAEDELFNRYER EGNPYRRIWKISCWRMAEDELFNRYERAIY CWRMAEDELFNRYERAIYAALSGNLKQLLP R M A E R A 1 2 1 1 0 0 3 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 12 1 1571.7038 P57740 P57740 414 425 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 0.00015206 77.64 By matching By MS/MS By matching By matching By matching 1 3 1 1 1 1.0784 1.1437 18.742 7 Median 0.9646 1.0717 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0192 1.1776 4.5329 3 0 Median 1.1252 1.1016 NaN 1 0 Median 1.7023 1.8496 NaN 1 0 Median 1.2651 1.1437 NaN 1 0 Median 45261000 20153000 25109000 2816600 1416100 1400500 0 0 0 38338000 17014000 21324000 1343600 652850 690740 2516800 981710 1535100 246600 87961 158640 23932 2518 24942;24943 126221;126222;126223;126224;126225;126226;126227 127360;127361;127362;127363;127364 127361 1195 5 MAEELKPMDTDKESIAESK HKNDNQILSEIVEAKMAEELKPMDTDKESI LKPMDTDKESIAESKSPEMSMQEDCISDIA K M A S K S 2 0 0 2 0 0 4 0 0 1 1 3 2 0 1 2 1 0 0 0 0 0 19 2 2151.0075 O60502 O60502 492 510 MGEA5 Protein O-GlcNAcase yes yes 3 0.016872 19.42 By MS/MS 1 0.80664 0.84556 NaN 1 Median 0.80664 0.84556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3480000 2058200 1421800 3480000 2058200 1421800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23933 1617 24944 126228 127365 127365 1 MAEFGPDSGGR ______________________________ MFKRMAEFGPDSGGRVKGVTIVKPIVYGNV R M A G R V 1 1 0 1 0 0 1 3 0 0 0 0 1 1 1 1 0 0 0 0 0 0 11 0 1122.4764 O95619;F8W1B9;F8W0J4 O95619 5 15 YEATS4 YEATS domain-containing protein 4 yes no 2 0.00144 81.338 By MS/MS 1 0.80177 0.76517 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80177 0.76517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3696800 2026600 1670200 0 0 0 0 0 0 3696800 2026600 1670200 0 0 0 0 0 0 0 0 0 23934 1783 24945 126229 127366 127366 1 MAELPVDPMLSK GALNHLGELTTSGRKMAELPVDPMLSKMIL GRKMAELPVDPMLSKMILASEKYSCSEEIL K M A S K M 1 0 0 1 0 0 1 0 0 0 2 1 2 0 2 1 0 0 0 1 0 0 12 0 1329.6672 O60231;Q5SQH5;A0A140T8Y5 O60231 815 826 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 0.026912 29.743 By matching By MS/MS 1 2 0.9539 0.9342 12.018 3 Plateau 0.87367 0.8535 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83648 0.91252 16.095 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3289000 1776400 1512700 1145000 624240 520780 0 0 0 2144000 1152100 991880 0 0 0 0 0 0 0 0 0 23935 1605 24946 126230;126231;126232 127367 127367 1 MAEMLVELVR KRCEKAEEKAKEIAKMAEMLVELVRRIEKS KEIAKMAEMLVELVRRIEKSESS_______ K M A V R R 1 1 0 0 0 0 2 0 0 0 2 0 2 0 0 0 0 0 0 2 0 0 10 0 1189.6199 Q9Y605 Q9Y605 110 119 MRFAP1 MORF4 family-associated protein 1 yes yes 2 0.00036244 87.308 By matching By MS/MS 1 2 0.77841 0.65779 71.621 3 Median NaN NaN NaN 0 0 Median 0.77841 0.65779 NaN 1 0 Median 0.52539 0.53241 99.805 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24091000 18860000 5230500 0 0 0 1494000 932390 561650 22597000 17928000 4668900 0 0 0 0 0 0 0 0 0 23936 4474 24947;24948 126233;126234;126235 127368;127369;127370 127369 1997;1998 3 MAENLGFVGPLK QIDIFEGIKDSQAQRMAENLGFVGPLKSQA AQRMAENLGFVGPLKSQAADQITKLYNLFL R M A L K S 1 0 1 0 0 0 1 2 0 0 2 1 1 1 1 0 0 0 0 1 0 0 12 0 1274.6693 Q96I99;E9PDQ8;H0Y852 Q96I99 207 218 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.00061059 68.735 By MS/MS 1 0.72618 0.67007 NaN 1 Median 0.72618 0.67007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21586000 12136000 9449700 21586000 12136000 9449700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23937 3678 24949 126236 127371 127371 1 MAEQDNKEAQEMIGALK EQLLGVQQHLSNTLKMAEQDNKEAQEMIGA EQDNKEAQEMIGALKERSHHMERIIESEQK K M A L K E 3 0 1 1 0 2 3 1 0 1 1 2 2 0 0 0 0 0 0 0 0 0 17 1 1904.8972 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 541 557 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 3 0.06417 9.9222 By MS/MS By matching 1 1 0.59244 0.61854 3.8792 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52591 0.6018 NaN 1 0 Median 0.66739 0.63574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2932600 1782500 1150100 0 0 0 0 0 0 2609500 1628800 980700 323090 153700 169390 0 0 0 0 0 0 23938 469 24950 126237;126238 127372 127372 1 MAETVDTSEMVNGATEQR QVSQNGLPAEQGSPRMAETVDTSEMVNGAT TVDTSEMVNGATEQRTSSKESSPIPSPTSD R M A Q R T 2 1 1 1 0 1 3 1 0 0 0 0 2 0 0 1 3 0 0 2 0 0 18 0 1967.8565 Q01082;A0A087WUZ3 Q01082 2141 2158 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 1.1476E-12 143.86 By matching By MS/MS By MS/MS 1 1 1 0.88601 0.91546 12.477 3 Median NaN NaN NaN 0 0 Median 0.88601 0.75262 NaN 1 0 Median 0.83987 0.91546 NaN 1 0 Median 1.0814 0.94901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16723000 8376700 8346200 0 0 0 2457800 1134100 1323800 12384000 6358100 6026000 1881000 884530 996430 0 0 0 0 0 0 23939 2681 24951 126239;126240;126241 127373;127374;127375 127373 3 MAFMAATDHSNQLR PTNDLLVLHLSDLIRMAFMAATDHSNQLRM RMAFMAATDHSNQLRMAGLQALEDIIKKFA R M A L R M 3 1 1 1 0 1 0 0 1 0 1 0 2 1 0 1 1 0 0 0 0 0 14 0 1591.7235 Q9P2D3 Q9P2D3 1298 1311 HEATR5B HEAT repeat-containing protein 5B yes yes 3 0.019057 36.445 By MS/MS 1 1.3592 1.3105 NaN 1 Median 1.3592 1.3105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4181100 2062800 2118200 4181100 2062800 2118200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23940 4221 24952 126242 127376 127376 0 MAFPLLDMVDLER QGLGFRNVVTVDELRMAFPLLDMVDLERRL LRMAFPLLDMVDLERRLKTTPLPRNDFPRI R M A E R R 1 1 0 2 0 0 1 0 0 0 3 0 2 1 1 0 0 0 0 1 0 0 13 0 1548.768 Q9BXW7 Q9BXW7 162 174 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 9.2589E-05 129.89 By MS/MS 1 1.3163 1.1482 NaN 1 Median NaN NaN NaN 0 0 Median 1.3163 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11886000 4919800 6966400 0 0 0 11886000 4919800 6966400 0 0 0 0 0 0 0 0 0 0 0 0 23941 3882 24953 126243 127377;127378;127379 127378 3 MAFRPGVVDLPEENR KYLLADCNEAFIKIKMAFRPGVVDLPEENR MAFRPGVVDLPEENREAAYNAITLPEEFHD K M A N R E 1 2 1 1 0 0 2 1 0 0 1 0 1 1 2 0 0 0 0 2 0 0 15 1 1728.8617 O60216;E5RFV8;E5RIN7;E5RJW1;E5RJK5 O60216 87 101 RAD21 Double-strand-break repair protein rad21 homolog yes no 2;3 1.2965E-06 88.507 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 2 0.81098 0.82017 37.148 8 Median 2.3084 2.1597 NaN 1 0 Median 0.82297 0.74548 NaN 1 0 Median 0.71009 0.8205 16.711 2 0 Median NaN NaN NaN 0 0 Median 0.81901 0.88792 14.309 2 0 Median 0.83527 0.74479 16.72 2 0 Median 55270000 28492000 26778000 2906000 794310 2111700 906480 307180 599300 35195000 19017000 16178000 0 0 0 15467000 7945000 7522300 795520 428740 366780 23942 1603 24954 126244;126245;126246;126247;126248;126249;126250;126251 127380;127381;127382;127383;127384 127384 4 MAGAIAQGLIR AEPSPRRVGFVGAGRMAGAIAQGLIRAGKV GAGRMAGAIAQGLIRAGKVEAQHILASAPT R M A I R A 3 1 0 0 0 1 0 2 0 2 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1099.6172 A0A0A0MQS1;Q53H96;F8WEI0 A0A0A0MQS1 31 41 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 2 0.0031272 74.127 By MS/MS 1 2.3326 1.9726 NaN 1 Median NaN NaN NaN 0 0 Median 2.3326 1.9726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7794600 1846500 5948100 0 0 0 7794600 1846500 5948100 0 0 0 0 0 0 0 0 0 0 0 0 23943 146 24955 126252 127385 127385 1 MAGATPVFIPLR ILIVPFYDCYEPMVRMAGATPVFIPLRSKP MVRMAGATPVFIPLRSKPVYGKRWSSSDWT R M A L R S 2 1 0 0 0 0 0 1 0 1 1 0 1 1 2 0 1 0 0 1 0 0 12 0 1271.706 Q6YP21;A0A0A0MRN7 Q6YP21 168 179 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes no 2 0.00061626 67.563 By MS/MS By matching 2 1 0.98415 0.97769 10.275 3 Median 0.92575 0.92169 8.3414 2 0 Median 1.2393 1.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10489000 5817700 4670800 10193000 5708700 4484800 295030 109030 186000 0 0 0 0 0 0 0 0 0 0 0 0 23944 3196 24956 126253;126254;126255 127386;127387 127386 2 MAGDETQPTR LLEFFKQVGEVKFVRMAGDETQPTRFAFVE VKFVRMAGDETQPTRFAFVEFADQNSVPRA R M A T R F 1 1 0 1 0 1 1 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 10 0 1104.487 Q8WXA9 Q8WXA9 98 107 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 2 0.010842 57.96 By MS/MS 1 1.5409 1.6443 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5409 1.6443 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224700 671360 1553300 0 0 0 0 0 0 2224700 671360 1553300 0 0 0 0 0 0 0 0 0 23945 3516 24957 126256 127388 127388 1 MAGDPVANVR GQDITTKHMLPTVLRMAGDPVANVRFNVAK PTVLRMAGDPVANVRFNVAKSLQKIGPILD R M A V R F 2 1 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 2 0 0 10 0 1028.5073 P30153;B3KQV6;E9PH38 P30153 528 537 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.000283 126.52 By MS/MS By MS/MS By MS/MS 2 3 1 0.83533 0.77547 26.368 6 Median 0.89004 0.83665 2.4462 2 0 Median 0.73277 0.63304 27.107 3 2 Median 0.82453 0.85529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68641000 43258000 25383000 40020000 23179000 16841000 24465000 17656000 6808500 4156500 2422700 1733700 0 0 0 0 0 0 0 0 0 23946 2190 24958;24959 126257;126258;126259;126260;126261;126262 127389;127390;127391;127392;127393;127394 127390 931 6 MAGDQVANVR GQEITTKQMLPIVLKMAGDQVANVRFNVAK PIVLKMAGDQVANVRFNVAKSLQKIGPILD K M A V R F 2 1 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 2 0 0 10 0 1059.5131 P30154;H0YDG7 P30154 540 549 PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2 0.0016573 63.565 By MS/MS 1 1.412 1.2193 NaN 1 Median NaN NaN NaN 0 0 Median 1.412 1.2193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646900 757230 889690 0 0 0 1646900 757230 889690 0 0 0 0 0 0 0 0 0 0 0 0 23947 2191 24960 126263 127395 127395 1 MAGIAQGVYSR ILPNWNFFLALSYFKMAGIAQGVYSRYLLG SYFKMAGIAQGVYSRYLLGNNSSEDSFLFA K M A S R Y 2 1 0 0 0 1 0 2 0 1 0 0 1 0 0 1 0 0 1 1 0 0 11 0 1151.5757 Q709F0;F8WEV0;D6RDI8 Q709F0 316 326 ACAD11 Acyl-CoA dehydrogenase family member 11 yes no 2 0.00020467 102.06 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74837 0.75445 98.2 4 Median 0.75882 0.74278 NaN 1 1 Median 0.15322 0.1516 NaN 1 0 Median 0.73805 0.76631 NaN 1 0 Median 1.7937 1.5454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10950000 6574400 4375700 2705200 1686800 1018400 556410 488530 67884 5936800 3764100 2172700 1751700 634920 1116700 0 0 0 0 0 0 23948 3206 24961 126264;126265;126266;126267 127396;127397;127398;127399 127397 4 MAGNEYVGFSNATFQSER NNAEKFDYVMQFLNKMAGNEYVGFSNATFQ NEYVGFSNATFQSERESGDRNFAIGYYLKE K M A E R E 2 1 2 0 0 1 2 2 0 0 0 0 1 2 0 2 1 0 1 1 0 0 18 0 2006.8792 O94925 O94925 365 382 GLS Glutaminase kidney isoform, mitochondrial yes yes 2 1.1433E-05 54.524 By MS/MS By matching 3 1 1.2193 1.1523 4.7814 4 Median 1.2057 1.1927 4.9133 3 2 Median 1.2515 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12980000 5708200 7272000 12659000 5569300 7089300 321540 138840 182710 0 0 0 0 0 0 0 0 0 0 0 0 23949 1738 24962 126268;126269;126270;126271 127400;127401;127402;127403 127401 4 MAGTAFDFENMK HFETTCNDIKDIYKRMAGTAFDFENMKRKQ YKRMAGTAFDFENMKRKQNDVFGEAEQ___ R M A M K R 2 0 1 1 0 0 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 12 0 1360.5792 P31150 P31150 424 435 GDI1 Rab GDP dissociation inhibitor alpha yes yes 2 0.0044584 43.512 By MS/MS By matching By matching 1 1 1 1.2411 1.4385 13.756 3 Plateau 1.5001 1.4385 NaN 1 0 Median 1.2411 1.0925 NaN 1 0 Median 1.2152 1.2543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4716900 2164900 2551900 2849700 1385500 1464200 793280 327760 465520 1073900 451720 622170 0 0 0 0 0 0 0 0 0 23950 2201 24963 126272;126273;126274 127404;127405 127404 2 MAGTAFDFENMKR HFETTCNDIKDIYKRMAGTAFDFENMKRKQ KRMAGTAFDFENMKRKQNDVFGEAEQ____ R M A K R K 2 1 1 1 0 0 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 13 1 1516.6803 P31150 P31150 424 436 GDI1 Rab GDP dissociation inhibitor alpha yes yes 2;3 0.00012706 79.974 By MS/MS By matching By matching 2 1 1 1.167 1.1655 16.854 4 Median 1.167 1.1655 10.433 2 0 Median 1.0319 0.94195 NaN 1 0 Median 1.3666 1.3835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13900000 6483600 7416400 11552000 5512700 6039000 831440 393400 438040 1516900 577500 939380 0 0 0 0 0 0 0 0 0 23951 2201 24964 126275;126276;126277;126278 127406;127407;127408 127407 3 MAGVNTDR QWQVFSAERTEEWQRMAGVNTDRLEPLRGE RTEEWQRMAGVNTDRLEPLRGEPNPVPNFI R M A D R L 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 8 0 862.3967 Q92508 Q92508 1127 1134 PIEZO1 Piezo-type mechanosensitive ion channel component 1 yes yes 2 0.031031 38.792 By MS/MS 1 1.3009 1.3113 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3009 1.3113 NaN 1 0 Median NaN NaN NaN 0 0 Median 1528200 672020 856140 0 0 0 0 0 0 0 0 0 0 0 0 1528200 672020 856140 0 0 0 23952 3529 24965 126279 127409 127409 1 MAIESAGFK FDLDKSGSMSAYEMRMAIESAGFKLNKKLY SAYEMRMAIESAGFKLNKKLYELIITRYSE R M A F K L 2 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 9 0 952.4688 P07384 P07384 642 650 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00081745 96.253 By MS/MS By MS/MS By matching 2 1 1 1.1423 1.0518 35.542 4 Median 0.96826 0.90806 7.9356 2 0 Median 1.3179 1.1517 NaN 1 0 Median 1.7185 1.9177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26436000 12264000 14172000 15132000 7309300 7823000 5992800 2465100 3527600 5310600 2489200 2821400 0 0 0 0 0 0 0 0 0 23953 1886 24966 126280;126281;126282;126283 127410;127411;127412;127413 127411 4 MAILQIMK RQVSDVQKRVQVDVKMAILQIMKELNKRGR RVQVDVKMAILQIMKELNKRGRVLVNDAQK K M A M K E 1 0 0 0 0 1 0 0 0 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 946.53438 Q13263;M0R3C0 Q13263 297 304 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.0032511 99.919 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 3 4 4 5 3 1.0846 1.118 21.791 22 Median 1.0681 1.0284 5.1138 3 0 Plateau 1.1946 1.0449 10.204 3 0 Median 1.0668 1.1442 5.4591 4 1 Median 1.2896 1.1339 27.949 4 0 Median 1.0042 0.98249 13.062 5 0 Median 1.3888 1.1546 46.135 3 0 Median 93702000 43761000 49941000 33191000 15610000 17581000 5670900 2627100 3043800 32964000 15415000 17549000 2421100 1100200 1320800 18625000 8606700 10018000 830010 401750 428260 23954 2802 24967;24968 126284;126285;126286;126287;126288;126289;126290;126291;126292;126293;126294;126295;126296;126297;126298;126299;126300;126301;126302;126303;126304;126305 127414;127415;127416;127417;127418;127419;127420;127421;127422;127423;127424;127425;127426;127427 127422 1500 14 MAIMVQSPMFDGK SCKKCSESIPKDSLRMAIMVQSPMFDGKVP LRMAIMVQSPMFDGKVPHWYHFSCFWKVGH R M A G K V 1 0 0 1 0 1 0 1 0 1 0 1 3 1 1 1 0 0 0 1 0 0 13 0 1453.6768 P09874;Q5VX84;Q5VX85 P09874 35 47 PARP1 Poly [ADP-ribose] polymerase 1 yes no 2 2.2753E-22 161.63 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 21 18 1 2 1.023 0.9765 27.263 45 Median 0.85414 0.83596 11.454 2 0 Median 0.94786 0.84057 3.58 2 0 Median 0.91667 0.99234 33.534 20 5 Median 1.1521 0.98501 23.153 18 0 Median 0.8081 0.83357 NaN 1 0 Median 1.195 0.9624 5.5055 2 0 Median 385790000 193770000 192020000 8197700 4221900 3975800 2434500 1226300 1208300 292590000 150550000 142040000 76155000 34383000 41772000 5417500 2908600 2508900 993670 484930 508740 23955 1922 24969;24970;24971;24972 126306;126307;126308;126309;126310;126311;126312;126313;126314;126315;126316;126317;126318;126319;126320;126321;126322;126323;126324;126325;126326;126327;126328;126329;126330;126331;126332;126333;126334;126335;126336;126337;126338;126339;126340;126341;126342;126343;126344;126345;126346;126347;126348;126349;126350;126351 127428;127429;127430;127431;127432;127433;127434;127435;127436;127437;127438;127439;127440;127441;127442;127443;127444;127445;127446;127447;127448;127449;127450;127451;127452;127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464;127465;127466;127467;127468;127469;127470;127471;127472;127473;127474;127475;127476;127477 127438 705;706;707 50 MAIQTQQSK NAQVIHQLGPGLRSKMAIQTQQSKFVNWQV PGLRSKMAIQTQQSKFVNWQVDGEYRGSDF K M A S K F 1 0 0 0 0 3 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 9 0 1033.5226 O96008;K7EKG4;K7EJ57 O96008 176 184 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2 0.0017805 77.732 By MS/MS 1 1.2539 1.0813 NaN 1 Median NaN NaN NaN 0 0 Median 1.2539 1.0813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2385400 996990 1388400 0 0 0 2385400 996990 1388400 0 0 0 0 0 0 0 0 0 0 0 0 23956 1806 24973 126352 127478;127479 127479 2 MAKPEEVLVVENDQGEVVR YLPMLFKVRLLMVSRMAKPEEVLVVENDQG EEVLVVENDQGEVVREFMKDTDSINLYKNM R M A V R E 1 1 1 1 0 1 4 1 0 0 1 1 1 0 1 0 0 0 0 5 0 0 19 1 2140.0834 O14980 O14980 424 442 XPO1 Exportin-1 yes yes 2;3 1.1608E-18 104.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 1 0.96366 0.94167 36.823 8 Median 0.77785 0.81108 1.2771 2 0 Median 0.97445 0.94446 5.7369 2 0 Median 0.87372 0.98908 NaN 1 1 Median 1.0174 0.97776 NaN 1 0 Median 2.2496 2.4742 NaN 1 0 Median 0.95879 0.83321 NaN 1 0 Median 97220000 52495000 44725000 52002000 29612000 22390000 6686500 3307100 3379400 22661000 13234000 9427800 5206400 2526500 2679900 8293200 2465000 5828200 2370400 1350900 1019500 23957 1510 24974 126353;126354;126355;126356;126357;126358;126359;126360 127480;127481;127482;127483;127484;127485;127486;127487 127484 8 MAKPPSDIQEIELR TTWLKKTEAELEMLKMAKPPSDIQEIELRV KMAKPPSDIQEIELRVKRLQEILKAFDTYK K M A L R V 1 1 0 1 0 1 2 0 0 2 1 1 1 0 2 1 0 0 0 0 0 0 14 1 1625.8447 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 6579 6592 SYNE2 Nesprin-2 yes no 3 2.8627E-06 91.307 By matching By MS/MS 1 1 0.49155 0.53658 28.141 2 Median 0.42791 0.43976 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56465 0.65472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15248000 9812200 5436300 3929400 2733100 1196400 0 0 0 11319000 7079100 4239900 0 0 0 0 0 0 0 0 0 23958 3521 24975 126361;126362 127488;127489 127488 2 MALDIEIATYR MARHLREYQDLLNVKMALDIEIATYRKLLE LNVKMALDIEIATYRKLLEGEESRISLPLP K M A Y R K 2 1 0 1 0 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1294.6591 P08670;B0YJC4;B0YJC5;H7C5W5;P41219 P08670 391 401 VIM;PRPH Vimentin;Peripherin yes no 2 0.00013373 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 1 6 1.0419 0.9534 32.731 16 Median 0.96367 0.93432 NaN 1 0 Median 1.3909 1.1746 18.574 4 0 Median 0.9967 1.0077 18.946 2 0 Median 0.99093 0.86774 16.171 2 0 Median 1.1872 1.1841 NaN 1 0 Median 0.86391 0.73922 33.199 6 0 Median 72535000 32863000 39672000 7066100 3666500 3399600 35279000 15055000 20224000 12398000 5806200 6592300 1388600 660470 728160 11429000 5213500 6215300 4974100 2461500 2512600 23959 1907 24976;24977 126363;126364;126365;126366;126367;126368;126369;126370;126371;126372;126373;126374;126375;126376;126377;126378 127490;127491;127492;127493;127494;127495;127496;127497;127498;127499 127498 683 9 MALDIEIATYRK MARHLREYQDLLNVKMALDIEIATYRKLLE NVKMALDIEIATYRKLLEGEESRISLPLPN K M A R K L 2 1 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 1 1422.7541 P08670;B0YJC4;B0YJC5;H7C5W5;P41219 P08670 391 402 VIM;PRPH Vimentin;Peripherin yes no 2;3 0.0016695 63.283 By matching By MS/MS By matching 1 3 1 1.1406 1.1684 23.213 5 Median 0.99464 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1819 1.2135 19.572 3 0 Median 1.0037 0.90895 NaN 1 0 Median 27381000 10805000 16576000 2512000 1017000 1495000 0 0 0 0 0 0 0 0 0 21683000 8224400 13459000 3186100 1563800 1622300 23960 1907 24978;24979 126379;126380;126381;126382;126383 127500;127501;127502;127503 127501 683 3 MALFAGGK TPGDHQICLHSNSTRMALFAGGKLRVHLDI LHSNSTRMALFAGGKLRVHLDIQVGEHANN R M A G K L 2 0 0 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 8 0 793.41565 Q7Z7H5;F8W7F7 Q7Z7H5 121 128 TMED4 Transmembrane emp24 domain-containing protein 4 yes no 2 0.028728 60.788 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4133400 0 4133400 4133400 0 4133400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23961 3258 24980 126384 127504 127504 1 MALIGLGVSHPVLK EELHYFVQNHFTSARMALIGLGVSHPVLKQ RMALIGLGVSHPVLKQVAEQFLNMRGGLGL R M A L K Q 1 0 0 0 0 0 0 2 1 1 3 1 1 0 1 1 0 0 0 2 0 0 14 0 1433.8428 P22695;H3BRG4;H3BSJ9 P22695 218 231 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2;3 0.00072702 62.303 By MS/MS By matching By MS/MS By matching 4 3 2 1 1.1099 1.0618 17.736 10 Median 1.0589 0.99264 5.2837 4 0 Median 1.6443 1.4069 10.263 3 0 Median 1.0495 1.1 22.954 2 0 Median 1.2597 1.1274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47018000 21866000 25151000 24722000 11965000 12757000 12027000 4856800 7170100 6107400 3399500 2707900 4161200 1644500 2516700 0 0 0 0 0 0 23962 2105 24981 126385;126386;126387;126388;126389;126390;126391;126392;126393;126394 127505;127506;127507;127508;127509;127510;127511;127512;127513 127507 9 MALIQMGSVEEAVQALIDLHNHDLGENHHLR GGVVKGFKFFQKDRKMALIQMGSVEEAVQA IDLHNHDLGENHHLRVSFSKSTI_______ K M A L R V 3 1 2 2 0 2 3 2 4 2 5 0 2 0 0 1 0 0 0 2 0 0 31 0 3489.7245 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20 A0A0U1RRM4 550 580 PTBP1 Polypyrimidine tract-binding protein 1 yes no 5 1.1462E-60 139.93 By MS/MS By matching 1 1 1.2939 1.1903 6.881 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1541 1.1337 NaN 1 0 Median 1.4506 1.2496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64419000 34247000 30173000 0 0 0 0 0 0 62766000 33445000 29322000 1653000 802030 850970 0 0 0 0 0 0 23963 312 24982 126395;126396 127514;127515 127515 148;149 2 MALLATVLGR RAAYFRQAENGMYIRMALLATVLGRF____ GMYIRMALLATVLGRF______________ R M A G R F 2 1 0 0 0 0 0 1 0 0 3 0 1 0 0 0 1 0 0 1 0 0 10 0 1043.6161 F8VPD4;P27708;H7C2E4 F8VPD4 2152 2161 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.010957 43.246 By MS/MS By matching By matching 1 4 1 1.268 1.1091 95.004 6 Median 1.447 1.4034 NaN 1 0 Median 1.268 1.1091 115.92 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9903 0.873 NaN 1 0 Median 16204000 8706200 7497700 3796600 1535500 2261100 12351000 7150400 5200400 0 0 0 0 0 0 0 0 0 56573 20400 36174 23964 1057 24983 126397;126398;126399;126400;126401;126402 127516;127517 127516 2 MALLATVLGRF RAAYFRQAENGMYIRMALLATVLGRF____ MYIRMALLATVLGRF_______________ R M A R F - 2 1 0 0 0 0 0 1 0 0 3 0 1 1 0 0 1 0 0 1 0 0 11 1 1190.6845 F8VPD4;P27708;H7C2E4 F8VPD4 2152 2162 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.037342 32.841 By MS/MS By matching 2 1 1.0078 1.0072 16.474 3 Median 1.097 1.0989 12.329 2 0 Median NaN NaN NaN 0 0 Median 0.83358 0.86262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1869900 882030 987830 1732500 813550 918920 0 0 0 137380 68473 68910 0 0 0 0 0 0 0 0 0 23965 1057 24984 126403;126404;126405 127518 127518 1 MALLMAEMSR KWSSKGNDIIAAAKRMALLMAEMSRLVRGG AAAKRMALLMAEMSRLVRGGSGTKRALIQC R M A S R L 2 1 0 0 0 0 1 0 0 0 2 0 3 0 0 1 0 0 0 0 0 0 10 0 1151.5501 P18206 P18206 994 1003 VCL Vinculin yes yes 2 0.00070454 108.98 By MS/MS By matching By matching 2 3 1 1.046 0.8922 19.572 6 Median 1.2399 1.2108 13.563 2 0 Median 1.0948 0.92079 6.8137 3 0 Plateau NaN NaN NaN 0 0 Median 0.94966 0.83026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24351000 11307000 13044000 14884000 6850200 8033700 9185200 4286700 4898600 0 0 0 281420 169880 111540 0 0 0 0 0 0 23966 2057 24985 126406;126407;126408;126409;126410;126411 127519;127520;127521 127520 2 MALNHPYFNDLDNQIK SKMLIYDPAKRISGKMALNHPYFNDLDNQI ALNHPYFNDLDNQIKKM_____________ K M A I K K 1 0 3 2 0 1 0 0 1 1 2 1 1 1 1 0 0 0 1 0 0 0 16 0 1931.92 P06493;A0A024QZP7 P06493 280 295 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 3 0.00064544 37.092 By matching By matching By MS/MS By matching 1 1 1 1 0.94381 0.94409 9.5871 4 Linear 0.93134 0.84606 NaN 1 0 Median 0.94618 0.79369 NaN 1 0 Median 1.0084 0.97256 NaN 1 0 Median 0.94144 0.79354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69322000 34052000 35270000 20470000 10019000 10451000 4995900 2635900 2360000 41029000 19991000 21038000 2827600 1406300 1421300 0 0 0 0 0 0 23967 1871 24986 126412;126413;126414;126415 127522 127522 1 MALNSLMSLMK NMQLLSSSVGIEDKKMALNSLMSLMKLMGP EDKKMALNSLMSLMKLMGPKHVSSVRVKMM K M A M K L 1 0 1 0 0 0 0 0 0 0 3 1 3 0 0 2 0 0 0 0 0 0 11 0 1237.6233 A0A590UJ01;Q13535 A0A590UJ01 747 757 ATR Serine/threonine-protein kinase ATR yes no 2 0.008961 46.129 By MS/MS By matching By matching By matching 2 1 1 1 0.85125 0.74584 52.632 5 Median 0.49242 0.49033 92.919 2 0 Median 0.85125 0.74584 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92624 0.85041 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69622 0.6054 NaN 1 0 Median 13238000 7426400 5811700 10993000 6454300 4538700 1842600 764700 1077900 0 0 0 323030 153130 169910 0 0 0 79423 54263 25160 23968 480 24987 126416;126417;126418;126419;126420 127523 127523 201 1 MALPELVR LLEYEEKKRQAEEEKMALPELVRAQVPFSS RQAEEEKMALPELVRAQVPFSSCLEAYGAP K M A V R A 1 1 0 0 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 8 0 927.52117 P45974 P45974 517 524 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0071131 68.422 By MS/MS By matching 2 2 1.0269 0.94487 2.6064 4 Median 0.98522 0.96551 2.5073 2 0 Median 1.0708 0.93227 1.3484 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9763700 5008500 4755200 5461500 2867200 2594400 4302100 2141300 2160800 0 0 0 0 0 0 0 0 0 0 0 0 23969 2332 24988 126421;126422;126423;126424 127524 127524 1 MALSFVQR FIADHCPTLRVEALKMALSFVQRTFNVDMY LRVEALKMALSFVQRTFNVDMYEEIHRKLS K M A Q R T 1 1 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 0 8 0 950.50077 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070;J3QS84;J3QS88;J3KTB0;J3QLE8;J3QLT0;J3QL53;J3KRE8;J3KSA5;J3KRJ4 C9JFE4 61 68 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.0035088 91.906 By matching By MS/MS By MS/MS 1 1 1 1.1743 1.144 10.451 3 Plateau 1.1807 1.144 NaN 1 0 Median 1.1445 0.97296 NaN 1 0 Median 1.1558 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17540000 7958400 9582000 7193700 3042100 4151600 4207700 2032700 2175100 6139000 2883600 3255400 0 0 0 0 0 0 0 0 0 23970 695 24989 126425;126426;126427 127525;127526 127525 2 MALVADEQQR QLREKLESAEPPEKKMALVADEQQRLMQRA PPEKKMALVADEQQRLMQRALQQNFLAMAA K M A Q R L 2 1 0 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1159.5656 Q99856 Q99856 463 472 ARID3A AT-rich interactive domain-containing protein 3A yes yes 2 0.00028636 126.41 By matching By MS/MS By matching 1 1 1 1.0609 1.0791 10.859 3 Plateau NaN NaN NaN 0 0 Median 0.97624 0.86888 NaN 1 0 Median 1.0609 1.0791 NaN 1 0 Median 1.1388 0.98095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14368000 6512200 7856000 0 0 0 504730 185310 319410 12633000 5793000 6839600 1230900 533850 697000 0 0 0 0 0 0 23971 3772 24990 126428;126429;126430 127527 127527 1 MALVLEALPQIAAK KLKAEAYQKYGDAAKMALVLEALPQIAAKI KMALVLEALPQIAAKIAAPLTKVDEIVVLS K M A A K I 4 0 0 0 0 1 1 0 0 1 3 1 1 0 1 0 0 0 0 1 0 0 14 0 1466.8531 J3QLD9;E7EMK3;Q14254 J3QLD9 357 370 FLOT2 Flotillin-2 yes no 2 0.00078623 60.563 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.2936 1.1081 20.407 5 Median 0.87907 0.87275 NaN 1 0 Median 1.3735 1.1996 11.223 2 0 Median 1.3683 1.3996 NaN 1 0 Median 1.0471 0.93208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5170000 2186900 2983100 659830 398100 261730 3020800 1173300 1847500 1360300 597230 763040 129110 18246 110860 0 0 0 0 0 0 23972 856 24991 126431;126432;126433;126434;126435 127528;127529;127530 127529 3 MALVLER EAPDSTAAGGSASKRMALVLERVCSTLLGL AGGSASKRMALVLERVCSTLLGLEEHLNAL R M A E R V 1 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 7 0 830.46841 Q3LXA3;H0YCY6;I3L252 Q3LXA3 374 380 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.010865 81.297 By MS/MS By matching 1 1 0.80637 0.77542 13.547 2 Median 0.88606 0.85337 NaN 1 0 Median 0.73385 0.70459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8441200 4049800 4391300 6633900 2969800 3664100 1807300 1080000 727250 0 0 0 0 0 0 0 0 0 0 0 0 23973 3012 24992 126436;126437 127531;127532 127531 2 MAMLQEEPVIVKPMPGKPNTQNPPR EAANLRHKLLELTQKMAMLQEEPVIVKPMP VKPMPGKPNTQNPPRRGPLSQNGSFGPSPV K M A P R R 1 1 2 0 0 2 2 1 0 1 1 2 3 0 6 0 1 0 0 2 0 0 25 2 2801.439 Q5JRA6 Q5JRA6 1633 1657 MIA3 Melanoma inhibitory activity protein 3 yes yes 4 6.5608E-05 35.918 By MS/MS 1 0.37272 0.39399 NaN 1 Median 0.37272 0.39399 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589700 2986400 1603300 4589700 2986400 1603300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23974 3049 24993 126438 127533 127533 1 MANFQNFKPR ______________________________ ______________________________ - M A P R S 1 1 2 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 0 0 0 10 1 1251.6183 E9PL41;Q9NWT6 E9PL41 1 10 HIF1AN Hypoxia-inducible factor 1-alpha inhibitor yes no 3 0.0081206 35.541 By MS/MS By matching 1 1 0.77683 0.77675 9.6697 2 Median 0.67737 0.72542 NaN 1 0 Median 0.8909 0.83172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2635900 1463800 1172100 2233700 1249000 984740 402180 214830 187350 0 0 0 0 0 0 0 0 0 0 0 0 23975 955 24994 126439;126440 127534 127534 1 MANLTELELIR NNEGTKLIVLNSLKKMANLTELELIRCDLE SLKKMANLTELELIRCDLERIPHSIFSLHN K M A I R C 1 1 1 0 0 0 2 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 11 0 1301.7013 Q8IWT6 Q8IWT6 590 600 LRRC8A Volume-regulated anion channel subunit LRRC8A yes yes 2 2.4863E-06 160.59 By matching By MS/MS 1 1 1.4256 1.3273 25.269 2 Median 1.5867 1.587 NaN 1 0 Median 1.2808 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3148300 1188900 1959500 371110 134310 236800 2777200 1054500 1722700 0 0 0 0 0 0 0 0 0 0 0 0 23976 3328 24995 126441;126442 127535 127535 1 MANMDFVFDR EMIRGVFFLNRAAMKMANMDFVFDRMFTNP RAAMKMANMDFVFDRMFTNPRDSYGKPLVK K M A D R M 1 1 1 2 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 10 0 1244.5318 Q8N1G2 Q8N1G2 240 249 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 0.026204 35.295 By matching By matching By MS/MS By matching 2 1 1 1 1.2141 1.111 8.8854 5 Median 1.252 1.2424 3.2234 2 0 Median 1.1256 1.0116 NaN 1 0 Median 1.0358 1.111 NaN 1 0 Median 1.3334 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6526300 2992800 3533600 2576700 1198000 1378600 1018500 472030 546430 2749000 1238500 1510500 182200 84236 97965 0 0 0 0 0 0 23977 3358 24996 126443;126444;126445;126446;126447 127536;127537 127537 2 MAPALSGANLTSPR RTAAALAPASLTSARMAPALSGANLTSPRV RMAPALSGANLTSPRVPLSAYERVSGRTSP R M A P R V 3 1 1 0 0 0 0 1 0 0 2 0 1 0 2 2 1 0 0 0 0 0 14 0 1384.7133 Q9UQ35 Q9UQ35 2371 2384 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 3.523E-34 166.69 By MS/MS By MS/MS 1 2 1.4966 1.4506 29.563 3 Plateau 1.4966 1.4506 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1276 1.1726 38.027 2 2 Median NaN NaN NaN 0 0 Median 48395000 16340000 32055000 34136000 10094000 24041000 0 0 0 0 0 0 0 0 0 14259000 6245200 8013700 0 0 0 23978 4359 24997 126448;126449;126450 127538;127539;127540 127538 3 MAPDPVAAETAAQGPTPR ______________________________ DPVAAETAAQGPTPRYFTWDEVAQRSGCEE - M A P R Y 5 1 0 1 0 1 1 1 0 0 0 0 1 0 4 0 2 0 0 1 0 0 18 0 1778.8621 O60427 O60427 1 18 FADS1 Fatty acid desaturase 1 yes yes 2 5.7816E-06 65.805 By MS/MS 1 1.2115 1.1883 NaN 1 Median 1.2115 1.1883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10764000 3915000 6848600 10764000 3915000 6848600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23979 1614 24998 126451 127541 127541 1 MAPEVLPKPR ______________________________ ______________________________ - M A P R M 1 1 0 0 0 0 1 0 0 0 1 1 1 0 3 0 0 0 0 1 0 0 10 1 1136.6376 P09669 P09669 1 10 COX6C Cytochrome c oxidase subunit 6C yes yes 2 0.013829 61.999 By MS/MS By MS/MS By matching 2 3 1 0.71551 0.67782 35.484 6 Median 0.42234 0.41415 14.76 2 0 Median 0.86495 0.76366 18.434 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75129 0.88642 NaN 1 0 Median NaN NaN NaN 0 0 Median 25974000 17126000 8847700 15848000 11541000 4306500 9975400 5490700 4484700 0 0 0 0 0 0 150450 93967 56484 0 0 0 23980 1921 24999;25000 126452;126453;126454;126455;126456;126457 127542;127543;127544;127545;127546 127546 696 5 MAPVPLDDSNRPASLTK KMIASDSHRPEVKLKMAPVPLDDSNRPASL PVPLDDSNRPASLTKDRLLASTLVHSVKKE K M A T K D 2 1 1 2 0 0 0 0 0 0 2 1 1 0 3 2 1 0 0 1 0 0 17 1 1810.9247 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 551 567 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 2.6166E-12 88.021 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 5 3 7 4 0.65955 0.63532 15.384 20 Median NaN NaN NaN 0 0 Median 0.62539 0.58688 17.275 2 0 Median 0.56939 0.64514 17.357 5 2 Median 0.71828 0.68403 11.826 3 1 Plateau 0.5871 0.65201 15.123 6 0 Median 0.69427 0.61393 20.32 4 0 Median 132340000 81718000 50619000 0 0 0 2288500 1415900 872610 44608000 27520000 17089000 9931400 5657700 4273700 65631000 41913000 23718000 9878000 5211700 4666300 23981 4175 25001;25002 126458;126459;126460;126461;126462;126463;126464;126465;126466;126467;126468;126469;126470;126471;126472;126473;126474;126475;126476;126477;126478 127547;127548;127549;127550;127551;127552;127553;127554;127555;127556;127557;127558;127559;127560 127554 1893 14 MAPYQGPDAVPGALDYK RRELPPDQAEYCIARMAPYQGPDAVPGALD PYQGPDAVPGALDYKSFSTALYGESDL___ R M A Y K S 3 0 0 2 0 1 0 2 0 0 1 1 1 0 3 0 0 0 2 1 0 0 17 0 1791.8502 O43707;F5GXS2;H7C144 O43707 883 899 ACTN4 Alpha-actinin-4 yes no 2;3 2.5691E-05 63.727 By MS/MS By matching By MS/MS 4 4 2 0.66725 0.61937 17.968 10 Median 0.7463 0.71721 24.198 4 0 Median 0.66725 0.58015 9.189 4 0 Median 0.55919 0.61549 5.68 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115420000 65378000 50039000 94932000 52649000 42283000 8559500 4911000 3648500 11924000 7817200 4107100 0 0 0 0 0 0 0 0 0 23982 1585 25003;25004 126479;126480;126481;126482;126483;126484;126485;126486;126487;126488 127561;127562;127563;127564;127565;127566;127567;127568;127569 127564 514 9 MAQALEELR LVEVDSSRQQEYDFKMAQALEELRSQHDEQ QEYDFKMAQALEELRSQHDEQVRLYKLELE K M A L R S 2 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1059.5383 Q03252 Q03252 256 264 LMNB2 Lamin-B2 yes yes 2 1.9806E-07 167.24 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 6 4 1.061 1.0683 25.077 18 Median 1.0117 0.96906 NaN 1 0 Median 1.9779 1.8096 NaN 1 0 Median 0.98895 0.99356 19.288 3 1 Median 1.8908 1.5194 38.871 3 0 Plateau 0.95092 0.96563 11.564 6 0 Median 1.4303 1.1913 24.316 4 0 Median 228870000 108250000 120620000 4754700 2590400 2164300 596510 283160 313340 55827000 27063000 28764000 19265000 6304100 12961000 124640000 62692000 61951000 23779000 9316800 14462000 23983 2709 25005;25006 126489;126490;126491;126492;126493;126494;126495;126496;126497;126498;126499;126500;126501;126502;126503;126504;126505;126506 127570;127571;127572;127573;127574;127575;127576;127577;127578;127579;127580;127581;127582;127583;127584;127585;127586;127587;127588;127589 127575 1396 20 MAQALEELRSQHDEQVR LVEVDSSRQQEYDFKMAQALEELRSQHDEQ QALEELRSQHDEQVRLYKLELEQTYQAKLD K M A V R L 2 2 0 1 0 3 3 0 1 0 2 0 1 0 0 1 0 0 0 1 0 0 17 1 2038.9854 Q03252 Q03252 256 272 LMNB2 Lamin-B2 yes yes 3;4 1.8524E-12 128.9 By MS/MS By MS/MS 4 3 1.0645 1.1187 16.266 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0221 1.1124 5.6884 4 0 Median 1.622 1.434 20.789 3 0 Median 73780000 34344000 39437000 0 0 0 0 0 0 0 0 0 0 0 0 68344000 32062000 36281000 5437000 2281200 3155700 23984 2709 25007 126507;126508;126509;126510;126511;126512;126513 127590;127591;127592;127593;127594;127595;127596 127593 7 MAQAYDFALDK YVRETKGKLPSYKEKMAQAYDFALDKIGME YKEKMAQAYDFALDKIGMEIMSYQIWVDYI K M A D K I 3 0 0 2 0 1 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 11 0 1271.5856 Q12996;E9PLP8 Q12996 122 132 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.0003569 71.349 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.2206 1.0704 26.433 5 Median 1.517 1.5447 NaN 1 0 Median 1.6404 1.4767 NaN 1 0 Median 0.99456 0.97815 NaN 1 0 Median 1.2206 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81786 0.84019 NaN 1 0 Median 54932000 26479000 28454000 1357900 465040 892840 506400 182330 324070 52880000 25736000 27145000 80746 44451 36295 0 0 0 106830 50899 55932 23985 2777 25008 126514;126515;126516;126517;126518 127597;127598 127597 2 MAQELYMEQK ERRRTMMEDFRKYRKMAQELYMEQKNERLE RKYRKMAQELYMEQKNERLELRGGVDTDEL K M A Q K N 1 0 0 0 0 2 2 0 0 0 1 1 2 0 0 0 0 0 1 0 0 0 10 0 1269.5733 P55884 P55884 763 772 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.00076705 71.501 By MS/MS By MS/MS By matching 2 3 1 1.1752 1.0569 9.4731 6 Median 1.2081 1.1986 6.3618 2 0 Median 1.2039 1.0515 2.8391 3 0 Median 0.88982 0.96244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43947000 19887000 24060000 10705000 4510700 6194200 30698000 14373000 16325000 2544600 1003500 1541000 0 0 0 0 0 0 0 0 0 23986 2504 25009;25010 126519;126520;126521;126522;126523;126524 127599;127600;127601;127602;127603;127604 127601 1189 6 MAQEVLTHLK NVVNCLYHGEGAQQRMAQEVLTHLKEHPDA GAQQRMAQEVLTHLKEHPDAWTRVDTILEF R M A L K E 1 0 0 0 0 1 1 0 1 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1168.6274 O14980;C9JKM9;C9J673;C9IZS4;C9JQ02;C9JV99;H7BZC5;F8WF71;C9JF49;C9IYM2 O14980 45 54 XPO1 Exportin-1 yes no 2 0.00037716 90.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 1.2317 1.1186 13.647 9 Median 1.1929 1.1981 20.501 2 0 Median 1.2317 1.0371 13.452 3 0 Median 1.1067 1.2165 NaN 1 0 Median 1.3056 1.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2191 1.0031 17.478 2 2 Median 74038000 33737000 40300000 27073000 13006000 14068000 30969000 13613000 17356000 6338300 2844700 3493600 3003800 1383900 1620000 0 0 0 6653400 2889800 3763500 23987 1510 25011;25012 126525;126526;126527;126528;126529;126530;126531;126532;126533 127605;127606;127607;127608;127609;127610;127611;127612;127613;127614;127615 127609 485 11 MAQFDAK PQFRAVLGEVKLCEKMAQFDAKKFAETQPK GEVKLCEKMAQFDAKKFAETQPKKDTPRKE K M A A K K 2 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 7 0 809.37417 P26641 P26641 213 219 EEF1G Elongation factor 1-gamma yes yes 2 0.0022148 108.24 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 4 1 2 1.2097 1.0527 12.946 13 Median 1.2372 1.1486 NaN 1 0 Median 1.181 1.0027 4.4958 3 0 Median 1.3502 1.3065 5.7833 2 0 Median 1.1818 1.0519 5.2142 4 0 Median 1.4696 1.403 NaN 1 0 Median 1.162 0.97078 4.3947 2 0 Median 71331000 31552000 39779000 11324000 4991400 6332400 22583000 10665000 11918000 17421000 7241000 10180000 15230000 6855400 8374700 3036600 1115500 1921100 1737100 683590 1053600 23988 2149 25013 126534;126535;126536;126537;126538;126539;126540;126541;126542;126543;126544;126545;126546 127616;127617;127618;127619;127620;127621;127622;127623;127624;127625;127626;127627;127628;127629 127627 14 MAQHLQAAVAFVEQGHVR SFCRRRLPTVLLKLRMAQHLQAAVAFVEQG HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR R M A V R V 4 1 0 0 0 3 1 1 2 0 1 0 1 1 0 0 0 0 0 3 0 0 18 0 1991.0159 Q9NV31 Q9NV31 120 137 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 3;4 6.5699E-15 112.8 By MS/MS 3 1.0426 1.1034 20.028 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0426 1.1034 20.028 3 0 Plateau NaN NaN NaN 0 0 Median 48768000 23041000 25727000 0 0 0 0 0 0 0 0 0 0 0 0 48768000 23041000 25727000 0 0 0 23989 4122 25014;25015 126547;126548;126549 127630;127631;127632;127633 127633 1885 4 MAQYLEEER LKKQLRAAQLQHSEKMAQYLEEERHMREEN LQHSEKMAQYLEEERHMREENLRLQRKLQR K M A E R H 1 1 0 0 0 1 3 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 0 1167.523 Q16204 Q16204 287 295 CCDC6 Coiled-coil domain-containing protein 6 yes yes 2 0.0017428 88.948 By MS/MS By MS/MS 1 2 1.2181 1.1673 7.7755 3 Plateau 1.2181 1.1673 NaN 1 0 Median 1.1872 1.0289 3.8475 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16591000 7226300 9365000 7961600 3406100 4555500 8629700 3820200 4809500 0 0 0 0 0 0 0 0 0 0 0 0 23990 2980 25016 126550;126551;126552 127634;127635;127636;127637 127635 4 MASAPASYGSTTTKPMGLLSR LNPLQYIKQWKAFTKMASAPASYGSTTTKP SYGSTTTKPMGLLSRVMNTGSQFVMEGVKN K M A S R V 3 1 0 0 0 0 0 2 0 0 2 1 2 0 2 4 3 0 1 0 0 0 21 1 2126.05 Q8WVM8 Q8WVM8 502 522 SCFD1 Sec1 family domain-containing protein 1 yes yes 3 6.67E-13 84.499 By MS/MS By matching By matching 1 1 1 0.95939 1.0179 40.127 3 Median 0.57408 0.57583 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95939 1.0179 NaN 1 0 Median 1.3623 1.2491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16659000 9351800 7307100 11441000 7029700 4411600 0 0 0 4961000 2221400 2739600 256560 100660 155910 0 0 0 0 0 0 23991 3503 25017 126553;126554;126555 127638 127638 1 MASGAANVVGPK CGISKACPEKHFAFKMASGAANVVGPKICL AFKMASGAANVVGPKICLEDNVLMSGVKNN K M A P K I 3 0 1 0 0 0 0 2 0 0 0 1 1 0 1 1 0 0 0 2 0 0 12 0 1100.5648 Q92520;C9JP35;C9JMN4 Q92520 73 84 FAM3C Protein FAM3C yes no 2 0.0040418 66.621 By MS/MS 1 1.1338 1.0913 NaN 1 Median 1.1338 1.0913 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1742100 790120 952000 1742100 790120 952000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23992 3530 25018 126556 127639 127639 1 MASIYSEEGNIEHAFILYNK IPPRRYFRSGVEIIRMASIYSEEGNIEHAF SEEGNIEHAFILYNKYITLFIEKLPKHRDY R M A N K Y 2 0 2 0 0 0 3 1 1 3 1 1 1 1 0 2 0 0 2 0 0 0 20 0 2328.1096 O95630;C9JK83;C9JEK5;F5H5B9;C9JZ93 O95630 46 65 STAMBP STAM-binding protein yes no 3 0.021402 14.77 By MS/MS By matching 1 1 1.2584 1.1813 5.6821 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2432 1.2297 NaN 1 0 Median 1.2738 1.1348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3821200 1626600 2194600 0 0 0 0 0 0 3571800 1531600 2040200 249370 94967 154400 0 0 0 0 0 0 23993 1784 25019 126557;126558 127640 127640 1 MASMNKPAFQAIR EVHIQGFPGQHYCPRMASMNKPAFQAIRSH PRMASMNKPAFQAIRSHSPAKPVLIFVSSR R M A I R S 3 1 1 0 0 1 0 0 0 1 0 1 2 1 1 1 0 0 0 0 0 0 13 1 1463.7377 Q8N3C0 Q8N3C0 1538 1550 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.00035401 59.227 By MS/MS By MS/MS 2 2 0.99458 0.99139 15.219 4 Median 0.85094 0.87255 15.339 2 0 Median 1.1311 1.0663 7.5822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24988000 12384000 12603000 10819000 6009400 4809900 14168000 6374900 7793300 0 0 0 0 0 0 0 0 0 0 0 0 23994 3366 25020 126559;126560;126561;126562 127641;127642;127643 127643 3 MASNIFGPTEEPQNIPK FGSPEEATPSSRPNRMASNIFGPTEEPQNI SNIFGPTEEPQNIPKRTNPPGGKGSGIFDE R M A P K R 1 0 2 0 0 1 2 1 0 2 0 1 1 1 3 1 1 0 0 0 0 0 17 0 1871.9087 H3BMT0;H3BTV5;H3BU16;A6NGP5;H3BMV3;Q9H910;H3BMM8;B4E1P3 H3BMT0 27 43 HN1L Hematological and neurological expressed 1-like protein yes no 2 2.7598E-05 56.225 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.74694 0.66125 5.859 4 Median 0.70994 0.66162 NaN 1 0 Median 0.76963 0.66087 NaN 1 0 Median 0.74718 0.70521 NaN 1 0 Median 0.74669 0.61116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14952000 8513800 6438600 8987500 5007500 3980000 343150 202550 140600 5318400 3129700 2188700 303300 174060 129240 0 0 0 0 0 0 23995 514 25021 126563;126564;126565;126566 127644;127645;127646 127645 3 MASNIFGTPEENQASWAK ______________________________ NIFGTPEENQASWAKSAGAKSSGGREDLES - M A A K S 3 0 2 0 0 1 2 1 0 1 0 1 1 1 1 2 1 1 0 0 0 0 18 0 1979.9047 J3KSH8;J3KT51;Q9UK76 J3KSH8 1 18 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 2;3 2.1003E-14 112.44 By MS/MS By matching 3 1 1.3072 1.2234 14.497 4 Median 1.2116 1.1229 15.218 3 0 Median NaN NaN NaN 0 0 Median 1.4102 1.3328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30265000 13368000 16897000 29282000 12899000 16383000 0 0 0 982790 469290 513500 0 0 0 0 0 0 0 0 0 23996 1331 25022;25023 126567;126568;126569;126570 127647;127648;127649;127650 127648 439 4 MASTFIGNSTAIQELFKR NVKVAVCDIPPRGLKMASTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFSAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 18 1 2013.0353 Q9BUF5 Q9BUF5 363 380 TUBB6 Tubulin beta-6 chain yes yes 3 1.3371E-06 73.464 By MS/MS By matching By MS/MS 2 1 1 1.2741 1.2691 30.86 4 Median 1.2741 1.2691 3.1545 2 0 Median 1.1197 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0749 2.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median 94417000 39427000 54990000 67961000 30915000 37046000 1879700 828520 1051200 0 0 0 0 0 0 24576000 7683700 16892000 0 0 0 23997 3838 25024 126571;126572;126573;126574 127651;127652;127653;127654 127653 4 MATEVAADALGEEWK EVDDERKLRTFYEKRMATEVAADALGEEWK MATEVAADALGEEWKGYVVRISGGNDKQGF R M A W K G 4 0 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 15 0 1619.7501 P62753;A2A3R5;A2A3R7 P62753 32 46 RPS6 40S ribosomal protein S6 yes no 2 3.049E-09 124.1 By MS/MS By matching By MS/MS By matching By matching By matching 3 4 2 2 3 6 1.1803 1.0527 16.92 20 Median 1.0789 0.98365 31.632 3 0 Median 1.1619 0.99341 4.2581 4 0 Median 1.1229 1.0794 5.2255 2 0 Median 1.1257 0.96073 7.1687 2 0 Median 1.4303 1.4117 14.996 3 0 Median 1.3708 1.1299 9.5957 6 0 Median 88539000 41131000 47409000 29710000 14180000 15531000 22938000 10665000 12272000 19101000 8863000 10238000 1572800 762590 810190 4998400 2191400 2807000 10219000 4468700 5750300 23998 2596 25025;25026 126575;126576;126577;126578;126579;126580;126581;126582;126583;126584;126585;126586;126587;126588;126589;126590;126591;126592;126593;126594 127655;127656;127657;127658;127659;127660;127661;127662 127657 1263 8 MATEVAADALGEEWKGYVVR EVDDERKLRTFYEKRMATEVAADALGEEWK AADALGEEWKGYVVRISGGNDKQGFPMKQG R M A V R I 4 1 0 1 0 0 3 2 0 0 1 1 1 0 0 0 1 1 1 3 0 0 20 1 2194.0729 P62753;A2A3R5 P62753 32 51 RPS6 40S ribosomal protein S6 yes no 3 0.06679 8.2879 By matching By MS/MS 1 1 1.2088 1.1462 6.9163 2 Median 1.2185 1.2037 NaN 1 0 Median 1.1991 1.0915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701300 1129400 1571900 1190700 507060 683600 1510600 622340 888260 0 0 0 0 0 0 0 0 0 0 0 0 23999 2596 25027 126595;126596 127663 127663 1 MATHTLITGLEEYVR QHYLGGQEPTPSNIRMATHTLITGLEEYVR MATHTLITGLEEYVRESFSLVQVQPGVDII R M A V R E 1 1 0 0 0 0 2 1 1 1 2 0 1 0 0 0 3 0 1 1 0 0 15 0 1732.8818 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47 P46379 806 820 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2;3 0.0015661 56.783 By MS/MS By matching 2 1 1.2408 1.1998 41.621 3 Median 1.0972 1.061 17.39 2 1 Median NaN NaN NaN 0 0 Median 1.9721 2.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8911100 3861700 5049400 8269900 3698000 4571900 0 0 0 641180 163710 477480 0 0 0 0 0 0 0 0 0 24000 8 25028 126597;126598;126599 127664;127665;127666 127666 3 MATLSVGGK CHVLKYTSKENCNGKMATLSVGGKTVSRFR ENCNGKMATLSVGGKTVSRFRKATSILEFY K M A G K T 1 0 0 0 0 0 0 2 0 0 1 1 1 0 0 1 1 0 0 1 0 0 9 0 862.45824 H0Y9G6;E7ETU7;P09001;D6RC14 H0Y9G6 157 165 MRPL3 39S ribosomal protein L3, mitochondrial yes no 2 0.016197 42.864 By MS/MS By MS/MS 1 1 1.3014 1.1784 11.494 2 Median 1.1181 1.0864 NaN 1 0 Median 1.5148 1.2781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4618800 1983200 2635600 2972000 1301000 1671000 1646800 682140 964680 0 0 0 0 0 0 0 0 0 0 0 0 24001 889 25029 126600;126601 127667;127668 127668 2 MATNAAAQNAIK EEQQQRLREAAEGLRMATNAAAQNAIKKKL GLRMATNAAAQNAIKKKLVQRLEHAAKQAA R M A I K K 5 0 2 0 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 12 0 1202.6078 Q9Y490 Q9Y490 899 910 TLN1 Talin-1 yes yes 2 9.3647E-06 98.033 By MS/MS By MS/MS 1 2 2.4963 2.1838 44.12 3 Plateau NaN NaN NaN 0 0 Median 2.5059 2.1853 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2469 1.0532 18.468 2 0 Median 6747500 2403500 4344000 0 0 0 4403100 1406900 2996200 0 0 0 0 0 0 0 0 0 2344400 996580 1347800 24002 4441 25030 126602;126603;126604 127669;127670;127671;127672 127669 4 MATNTVYVFAK FIINGSEKVLIAQEKMATNTVYVFAKKDSK AQEKMATNTVYVFAKKDSKYAYTGECRSCL K M A A K K 2 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 2 0 0 11 0 1243.6271 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 193 203 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.026602 50.607 By MS/MS By MS/MS 1 1 0.99744 0.92296 22.485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2934 1.082 NaN 1 0 Median 0.7692 0.78729 NaN 1 1 Median NaN NaN NaN 0 0 Median 9865500 5729900 4135600 0 0 0 0 0 0 0 0 0 861920 393050 468880 9003500 5336800 3666700 0 0 0 24003 671 25031 126605;126606 127673;127674 127673 2 MATQASTLYSNNITK HKGITHIGYTDLPSRMATQASTLYSNNITK MATQASTLYSNNITKLLKAISPDKDNFYFD R M A T K L 2 0 2 0 0 1 0 0 0 1 1 1 1 0 0 2 3 0 1 0 0 0 15 0 1641.8032 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 380 394 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 3.3904E-47 228.12 By MS/MS By MS/MS By MS/MS 3 3 1 0.95495 0.89869 38.042 7 Median 0.88083 0.8848 19.356 3 0 Median 1.635 1.4663 44.612 3 1 Median 0.7852 0.84467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 198930000 87255000 111680000 103550000 51467000 52087000 90160000 32972000 57188000 5218500 2815700 2402800 0 0 0 0 0 0 0 0 0 24004 2814 25032 126607;126608;126609;126610;126611;126612;126613 127675;127676;127677;127678;127679;127680;127681;127682;127683;127684;127685 127684 11 MAVILSLEQGNR YYSIEKEGQRKWYKRMAVILSLEQGNRLRE YKRMAVILSLEQGNRLREQYGLGPYEAVTP R M A N R L 1 1 1 0 0 1 1 1 0 1 2 0 1 0 0 1 0 0 0 1 0 0 12 0 1329.7075 A6NNK5;Q12888;H7BZY0 A6NNK5 1539 1550 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 4.0931E-06 105.4 By MS/MS By MS/MS By matching 1 2 1 1.3513 1.1855 26.056 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78241 0.85827 NaN 1 0 Median 1.3513 1.1855 6.8887 2 0 Median NaN NaN NaN 0 0 Median 2.1219 1.6126 NaN 1 0 Median 8311000 5234700 3076300 0 0 0 0 0 0 7054000 4755400 2298500 1033900 408540 625360 0 0 0 223140 70719 152420 24005 530 25033;25034 126614;126615;126616;126617 127686;127687 127686 213 2 MAVLALLAK KCDSWWAKDSPLETKMAVLALLAKILQIDS SPLETKMAVLALLAKILQIDSSVSFNTSHG K M A A K I 3 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 9 0 928.57796 P78527 P78527 1643 1651 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00144 93.262 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 2 4 4 2 4 1.2608 1.1436 19.83 19 Median 1.1202 1.1232 21.289 3 0 Median 1.5237 1.3431 2.2327 2 0 Median 0.96921 1.0398 12.248 4 0 Median 1.519 1.4019 1.0889 4 0 Median 0.86843 0.90431 12.823 2 0 Median 1.4475 1.219 16.697 4 0 Median 97766000 45558000 52207000 20217000 9425500 10791000 20848000 7885800 12962000 46923000 23910000 23013000 4172500 1530200 2642300 4216400 2186600 2029800 1389100 620340 768770 24006 2647 25035;25036 126618;126619;126620;126621;126622;126623;126624;126625;126626;126627;126628;126629;126630;126631;126632;126633;126634;126635;126636 127688;127689;127690;127691;127692;127693;127694;127695;127696;127697;127698 127689 1324 11 MAVLNEQVK AVAQFSKSIEVIENRMAVLNEQVKEAEGSS EVIENRMAVLNEQVKEAEGSSAEYKKEIEE R M A V K E 1 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 9 0 1030.5481 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 618 626 NASP Nuclear autoantigenic sperm protein yes no 2 0.00064128 107.66 By MS/MS By MS/MS 3 4 0.92995 0.83676 28.224 6 Median 0.98459 0.91659 24.652 3 0 Median 0.87834 0.76389 36.869 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125920000 55071000 70846000 47273000 22599000 24674000 78643000 32471000 46172000 0 0 0 0 0 0 0 0 0 0 0 0 24007 2376 25037;25038 126637;126638;126639;126640;126641;126642;126643 127699;127700;127701;127702;127703;127704;127705;127706;127707;127708 127702 1086 10 MAVLNEQVKEAEGSSAEYKK AVAQFSKSIEVIENRMAVLNEQVKEAEGSS EQVKEAEGSSAEYKKEIEELKELLPEIREK R M A K K E 3 0 1 0 0 1 4 1 0 0 1 3 1 0 0 2 0 0 1 2 0 0 20 2 2210.0889 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 618 637 NASP Nuclear autoantigenic sperm protein yes no 3;4 3.9669E-10 75.533 By MS/MS 2 1.1631 1.2192 3.6859 2 Median 1.1631 1.2192 3.6859 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13859000 5616900 8241900 13859000 5616900 8241900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24008 2376 25039 126644;126645 127709;127710 127709 2 MAVQDAVDALMQK FLKVSSVFKDEATVRMAVQDAVDALMQKAF VRMAVQDAVDALMQKAFNSSSFNSNTFLTR R M A Q K A 3 0 0 2 0 2 0 0 0 0 1 1 2 0 0 0 0 0 0 2 0 0 13 0 1418.6898 P46060 P46060 488 500 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 5.1709E-07 107.24 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 4 4 2 1 1 1.242 1.104 22.38 15 Median 1.2872 1.1869 25.411 3 0 Median 1.132 0.97109 18.298 4 0 Median 1.2041 1.2265 23.159 4 0 Median 1.1808 1.0196 1.0638 2 0 Median 1.4335 1.4786 NaN 1 0 Median 1.242 1.0444 NaN 1 0 Median 111910000 51815000 60096000 10110000 4414600 5695700 20911000 9787600 11124000 77924000 36284000 41640000 1226100 556060 670080 633840 287320 346520 1104900 484750 620170 24009 2336 25040;25041 126646;126647;126648;126649;126650;126651;126652;126653;126654;126655;126656;126657;126658;126659;126660 127711;127712;127713;127714;127715;127716;127717;127718;127719;127720;127721;127722;127723 127719 1062 13 MAVTFIGNSTAIQELFK NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL VTFIGNSTAIQELFKRISEQFTAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 17 0 1868.9706 Q5JP53;P07437;Q5ST81 Q5JP53 345 361 TUBB Tubulin beta chain yes no 2 5.9342E-13 156.69 By matching By MS/MS By MS/MS By matching By MS/MS 3 2 2 2 2 1.2132 1.057 49.906 11 Median 1.0564 1.0345 106.96 3 0 Median 1.2466 1.0594 5.3008 2 0 Median 0.90591 0.88544 19.501 2 0 Median 1.2542 1.1095 6.8577 2 0 Median NaN NaN NaN 0 0 Median 1.5331 1.2827 12.883 2 0 Median 227510000 102670000 124850000 2105600 1039700 1065900 179610000 80318000 99290000 43042000 20217000 22825000 658470 286920 371550 0 0 0 2099100 803690 1295500 24010 1887 25042;25043 126661;126662;126663;126664;126665;126666;126667;126668;126669;126670;126671 127724;127725;127726;127727;127728;127729 127729 656 6 MAVTFIGNSTAIQELFKR NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 18 1 2025.0717 Q5JP53;P07437;Q5ST81 Q5JP53 345 362 TUBB Tubulin beta chain yes no 2;3 2.942E-08 91.457 By MS/MS By matching By matching By matching By MS/MS By matching 5 3 1 2 3 5 1.2348 1.249 32.611 19 Median 1.1684 1.1643 13.168 5 1 Median 1.1346 1.0342 74.669 3 0 Median 1.2348 1.249 NaN 1 0 Median 1.5415 1.502 10.791 2 0 Median 1.4635 1.5124 17.048 3 0 Median 1.2166 1.0944 18.678 5 0 Median 48684000 20106000 28578000 20869000 8595200 12273000 2270000 1117300 1152700 2461800 951790 1510000 590930 222250 368680 9835000 3508400 6326600 12658000 5710700 6946800 24011 1887 25044;25045 126672;126673;126674;126675;126676;126677;126678;126679;126680;126681;126682;126683;126684;126685;126686;126687;126688;126689;126690 127730;127731;127732;127733;127734;127735 127730 656 6 MAVVDTVIGGR MRLEVVDKSQVSRTRMAVVDTVIGGRLRLL SRTRMAVVDTVIGGRLRLLYEDGDSDDDFW R M A G R L 1 1 0 1 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 3 0 0 11 0 1116.5961 Q969R5 Q969R5 342 352 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 yes yes 2 0.0024956 76.827 By MS/MS 1 1.1898 1.2517 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1898 1.2517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4319700 1697700 2622000 0 0 0 0 0 0 4319700 1697700 2622000 0 0 0 0 0 0 0 0 0 24012 3585 25046 126691 127736 127736 1 MAYYEMR AKRHLIEMGYLQGGKMAYYEMRAEHSVDID MGYLQGGKMAYYEMRAEHSVDIDVDIDWPI K M A M R A 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 7 0 962.39901 Q8NFW8;F5GYM0 Q8NFW8 235 241 CMAS N-acylneuraminate cytidylyltransferase yes no 2 0.0057899 95.62 By MS/MS By MS/MS 1 1 1.0398 0.95717 14.259 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8786 0.86537 NaN 1 0 Median 1.2305 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32758000 16131000 16627000 0 0 0 0 0 0 12981000 6843400 6137400 19777000 9287600 10490000 0 0 0 0 0 0 24013 3441 25047 126692;126693 127737;127738;127739 127739 3 MCDVQVHKTRPLLSIR ______________________________ CDVQVHKTRPLLSIRSDKTLQDIVYKLVPG - M C I R S 0 2 0 1 1 1 0 0 1 1 2 1 1 0 1 1 1 0 0 2 0 0 16 2 1952.0448 A0A087X259 A0A087X259 1 16 PCGF2 yes yes 4 0.062945 10.196 By matching By matching By matching By MS/MS 1 1 1 3 0.70368 0.71984 22.012 6 Median 0.68389 0.71676 NaN 1 0 Median 0.93971 1.1025 NaN 1 0 Median 0.74167 0.87098 NaN 1 0 Median 0.70368 0.71984 12.852 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30882000 17282000 13600000 4342600 2411100 1931500 2036800 914730 1122100 7616200 4445900 3170300 16886000 9510100 7376000 0 0 0 0 0 0 24014 130 25048 126694;126695;126696;126697;126698;126699 127740 127740 1 MCLFAGFQR ILDQTNVSAAAQRRKMCLFAGFQRKAVVVC AAQRRKMCLFAGFQRKAVVVCPKDEDYKQR K M C Q R K 1 1 0 0 1 1 0 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 9 0 1128.5209 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 593 601 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.012878 45.952 By matching By matching By MS/MS By matching 3 1 5 3 1.1829 1.1365 20.677 12 Median NaN NaN NaN 0 0 Median 1.2532 1.1294 14.651 3 0 Median 1.1835 1.2683 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1549 1.162 23.594 5 0 Median 1.239 1.0504 29.414 3 0 Median 26274000 11745000 14529000 0 0 0 3841100 1799400 2041700 1616900 691580 925310 0 0 0 20027000 8828600 11199000 789150 425440 363700 24015 2680 25049;25050 126700;126701;126702;126703;126704;126705;126706;126707;126708;126709;126710;126711 127741;127742;127743;127744;127745 127743 1358 5 MDAATLTYDTLR ______________________________ ______________________________ - M D L R F 2 1 0 2 0 0 0 0 0 0 2 0 1 0 0 0 3 0 1 0 0 0 12 0 1369.6548 Q9Y4P1;C9JIK8;F2Z2K8 Q9Y4P1 1 12 ATG4B Cysteine protease ATG4B yes no 2 0.00092876 59.426 By MS/MS By matching 1 1 1.0027 0.92986 8.8558 2 Median 0.98343 0.98995 NaN 1 0 Median 1.0222 0.87342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3939700 1886000 2053700 2141200 993670 1147600 1798400 892320 906100 0 0 0 0 0 0 0 0 0 0 0 0 24016 700 25051 126712;126713 127746;127747 127746 2 MDADDSRAPK ______________________________ ______________________________ - M D P K G 2 1 0 3 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 10 1 1104.487 Q01813 Q01813 1 10 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.0047334 44.318 By MS/MS 2 0.84755 0.86856 31.328 2 Median 0.84755 0.86856 31.328 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5093400 2494600 2598700 5093400 2494600 2598700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24017 2692 25052 126714;126715 127748 127748 1 MDAEVPDVNIEGPDAK DVKLPKADVDVSGPKMDAEVPDVNIEGPDA DAEVPDVNIEGPDAKLKGPKFKMPEMSIKP K M D A K L 2 0 1 3 0 0 2 1 0 1 0 1 1 0 2 0 0 0 0 2 0 0 16 0 1698.7771 Q09666 Q09666 1418 1433 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 7.4814E-10 103.75 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 0.82895 0.80212 18.681 13 Median 0.80184 0.76762 18.66 4 0 Median 1.0497 0.92425 12.939 3 0 Median 0.86235 0.91892 33.339 3 1 Plateau 0.82895 0.81006 3.0751 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146040000 79416000 66623000 81159000 44961000 36198000 10812000 5245200 5566900 44003000 24029000 19974000 10065000 5180700 4884300 0 0 0 0 0 0 24018 2749 25053;25054 126716;126717;126718;126719;126720;126721;126722;126723;126724;126725;126726;126727;126728 127749;127750;127751;127752;127753;127754;127755;127756;127757;127758;127759;127760;127761;127762 127752 1460 14 MDAILTEAIK RAQKQTPMASSPRPKMDAILTEAIKACFQK SPRPKMDAILTEAIKACFQKSGASVVAIRK K M D I K A 2 0 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5896 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 161 170 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.00063896 72.643 By MS/MS By MS/MS By matching 2 4 3 0.74903 0.75456 57.53 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30446 0.30718 10.421 2 1 Median NaN NaN NaN 0 0 Median 0.74242 0.74967 17.463 4 0 Median 1.0137 0.83806 49.935 3 0 Median 105350000 64343000 41005000 0 0 0 0 0 0 42676000 30997000 11680000 0 0 0 60341000 32261000 28081000 2330400 1086000 1244500 24019 3075 25055;25056 126729;126730;126731;126732;126733;126734;126735;126736;126737 127763;127764;127765;127766;127767;127768;127769 127765 1662 7 MDANSATSEEMNEIIHAR DWSEAFATVVTAAEKMDANSATSEEMNEII NSATSEEMNEIIHARFIRAVSELELLGFIK K M D A R F 3 1 2 1 0 0 3 0 1 2 0 0 2 0 0 2 1 0 0 0 0 0 18 0 2017.8833 Q9UBD5 Q9UBD5 662 679 ORC3 Origin recognition complex subunit 3 yes yes 3 1.4732E-06 72.819 By MS/MS By matching 1 1 1.1006 1.023 6.2315 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0527 1.0691 NaN 1 0 Median 1.1507 0.97888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15198000 7566100 7632100 0 0 0 0 0 0 14717000 7312200 7405100 480810 253820 226990 0 0 0 0 0 0 24020 4236 25057 126738;126739 127770;127771 127770 2 MDANVLMHLR LEEGEKNLGNIKVTKMDANVLMHLRSFDFI IKVTKMDANVLMHLRSFDFIHLDPFGTSVN K M D L R S 1 1 1 1 0 0 0 0 1 0 2 0 2 0 0 0 0 0 0 1 0 0 10 0 1198.5951 Q7Z2T5 Q7Z2T5 356 365 TRMT1L TRMT1-like protein yes yes 3 0.0061001 36.424 By matching By MS/MS 1 1 1.4247 1.4035 9.124 2 Median NaN NaN NaN 0 0 Median 1.6487 1.497 NaN 1 0 Median 1.2312 1.3158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2780000 1518100 1261900 0 0 0 826070 517350 308710 1953900 1000800 953150 0 0 0 0 0 0 0 0 0 24021 3235 25058 126740;126741 127772 127772 1 MDAPASAAAVR PRVASVLGTMEMGRRMDAPASAAAVRAFLE MGRRMDAPASAAAVRAFLERGHTELDTAFM R M D V R A 5 1 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 11 0 1058.5179 H3BLU7;O43488 H3BLU7 41 51 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 2 0.00014501 84.213 By MS/MS By MS/MS 1 2 0.83495 0.74119 3.2102 2 Median 0.80211 0.75821 NaN 1 0 Median 0.86914 0.72456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10090000 5243300 4846800 5152700 2626100 2526600 4937500 2617200 2320300 0 0 0 0 0 0 0 0 0 0 0 0 24022 1206 25059 126742;126743;126744 127773;127774;127775;127776 127773 4 MDASLGNLFAR FLLTFYVISQVFEIKMDASLGNLFARSALD FEIKMDASLGNLFARSALDTAARSTKPPRY K M D A R S 2 1 1 1 0 0 0 1 0 0 2 0 1 1 0 1 0 0 0 0 0 0 11 0 1193.5863 Q92520;C9JP35;C9JMN4 Q92520 31 41 FAM3C Protein FAM3C yes no 2 0.00018232 77.677 By MS/MS 1 1.0978 1.0402 NaN 1 Median 1.0978 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8955700 5000800 3954900 8955700 5000800 3954900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24023 3530 25060 126745 127777 127777 1 MDATANDVPSDR LAKKYKGQKGLVIAKMDATANDVPSDRYKV IAKMDATANDVPSDRYKVEGFPTIYFAPSG K M D D R Y 2 1 1 3 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 0 12 0 1290.551 P13667;A0A499FI48 P13667 583 594 PDIA4 Protein disulfide-isomerase A4 yes no 2 4.5586E-06 103.22 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 0.9363 0.95496 16.933 8 Median 0.7901 0.7684 13.185 2 0 Median 1.2363 1.0691 4.3172 2 0 Median 0.86369 0.89479 7.6185 3 2 Median 1.3856 1.1908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37124000 18543000 18581000 9168000 4994400 4173500 13549000 6322700 7225800 13416000 6815200 6601000 991110 410440 580660 0 0 0 0 0 0 24024 1993 25061;25062 126746;126747;126748;126749;126750;126751;126752;126753 127778;127779;127780;127781;127782;127783;127784;127785;127786;127787 127785 781 10 MDATANDVPSPYEVR LGEKLSKDPNIVIAKMDATANDVPSPYEVR MDATANDVPSPYEVRGFPTIYFSPANKKLN K M D V R G 2 1 1 2 0 0 1 0 0 0 0 0 1 0 2 1 1 0 1 2 0 0 15 0 1663.7512 P30101 P30101 434 448 PDIA3 Protein disulfide-isomerase A3 yes yes 2 2.7542E-09 153.95 By MS/MS By matching By MS/MS By MS/MS 3 2 2 2 0.79871 0.72968 7.8005 9 Median 0.73115 0.68571 6.5247 3 0 Median 0.85566 0.72812 6.2373 2 0 Median 0.76752 0.77079 7.7502 2 0 Median 0.90475 0.77507 1.3537 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140640000 74531000 66104000 65103000 35705000 29398000 22322000 11089000 11232000 38845000 20486000 18358000 14366000 7250900 7115000 0 0 0 0 0 0 24025 2189 25063;25064 126754;126755;126756;126757;126758;126759;126760;126761;126762 127788;127789;127790;127791;127792;127793;127794;127795;127796;127797;127798;127799;127800;127801;127802;127803;127804;127805 127799 929 18 MDATSYSSIASEFGVR GLEMKSIGSPVKVGKMDATSYSSIASEFGV DATSYSSIASEFGVRGYPTIKLLKGDLAYN K M D V R G 2 1 0 1 0 0 1 1 0 1 0 0 1 1 0 4 1 0 1 1 0 0 16 0 1719.7774 Q96JJ7;H3BPB3;B4DIE3 Q96JJ7 82 97 TMX3 Protein disulfide-isomerase TMX3 yes no 2 2.9511E-06 86.313 By MS/MS 2 1.0513 1.0346 12.346 2 Median 1.0513 1.0346 12.346 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470300 1888800 1581500 3470300 1888800 1581500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24026 3685 25065 126763;126764 127806 127806 1 MDCQECPEGYR AGALSVTIDGPSKVKMDCQECPEGYRVTYT SKVKMDCQECPEGYRVTYTPMAPGSYLISI K M D Y R V 0 1 0 1 2 1 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 11 0 1443.5217 P21333;Q60FE5;A0A087WWY3 P21333 2474 2484 FLNA Filamin-A no no 2 0.00011552 133.23 By MS/MS 1 0.919 0.75691 NaN 1 Median NaN NaN NaN 0 0 Median 0.919 0.75691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7865500 4382800 3482700 0 0 0 7865500 4382800 3482700 0 0 0 0 0 0 0 0 0 0 0 0 24027 2088;3120 25066 126765 127807;127808 127807 2 MDDPTVNWSNER AKTAGVKHLIVLINKMDDPTVNWSNERYEE INKMDDPTVNWSNERYEECKEKLVPFLKKV K M D E R Y 0 1 2 2 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 12 0 1462.6147 P15170;H3BR35 P15170 222 233 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.00052441 76.228 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.92617 0.89911 11.311 4 Median 0.96229 0.9149 NaN 1 0 Median 0.84874 0.73595 NaN 1 0 Median 0.8914 0.94956 NaN 1 0 Median 1.0566 0.88359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13110000 7010900 6099100 6504200 3558700 2945500 2697400 1373600 1323800 2850200 1593400 1256800 1058300 485210 573050 0 0 0 0 0 0 24028 2016 25067 126766;126767;126768;126769 127809;127810;127811;127812;127813 127809 5 MDDREDLVYQAK ______________________________ ______________________________ - M D A K L 1 1 0 3 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 12 1 1481.682 P62258;B4DJF2;I3L3T1;I3L0W5 P62258 1 12 YWHAE 14-3-3 protein epsilon yes no 2 1.5828E-06 108.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 4 4 3 1.1335 1.1083 8.47 18 Median 1.0896 1.1162 4.2075 3 0 Plateau 1.1556 1.0517 12.053 4 0 Median 1.0685 1.1462 4.7102 4 0 Median 1.2191 1.1437 7.9168 4 0 Median NaN NaN NaN 0 0 Median 1.2056 1.0714 12.6 3 0 Median 774200000 357830000 416370000 195810000 90348000 105460000 271140000 124180000 146960000 251140000 118460000 132690000 51741000 22909000 28832000 0 0 0 4358300 1935100 2423200 24029 2576 25068;25069 126770;126771;126772;126773;126774;126775;126776;126777;126778;126779;126780;126781;126782;126783;126784;126785;126786;126787 127814;127815;127816;127817;127818;127819;127820;127821;127822;127823;127824;127825;127826;127827;127828;127829;127830;127831;127832;127833;127834;127835;127836;127837 127834 1247 23 MDEEFTK QPLRVRGCILTLVERMDEEFTKIMQNTDPH CILTLVERMDEEFTKIMQNTDPHSQEYVEH R M D T K I 0 0 0 1 0 0 2 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 7 0 898.37423 Q99613;B5ME19 Q99613 451 457 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.010339 82.305 By MS/MS By MS/MS 2 2 1.1389 1.0542 10.934 4 Median 1.1226 1.1287 10.587 2 0 Median 1.1389 0.99406 9.2342 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18990000 8948300 10042000 3026400 1509000 1517400 15963000 7439200 8524200 0 0 0 0 0 0 0 0 0 0 0 0 24030 3757 25070 126788;126789;126790;126791 127838;127839;127840;127841 127840 4 MDELQLFR AINEDNSVVSLSQPKMDELQLFRGDTVLLK VSLSQPKMDELQLFRGDTVLLKGKKRREAV K M D F R G 0 1 0 1 0 1 1 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 8 0 1050.5168 P55072;C9JUP7;C9IZA5 P55072 46 53 VCP Transitional endoplasmic reticulum ATPase yes no 2 0.0024024 138.37 By MS/MS By MS/MS By matching By matching By matching 5 6 1 1 1 1.1549 1.0929 26.213 14 Median 1.1549 1.0991 9.1278 5 0 Median 1.2497 1.0849 11.589 6 0 Median 0.45552 0.45017 NaN 1 0 Median 1.1117 0.93045 NaN 1 0 Median 1.2124 1.2912 NaN 1 0 Median NaN NaN NaN 0 0 Median 81412000 37275000 44137000 52075000 23042000 29033000 26330000 12257000 14073000 1791200 1441200 349970 242850 118400 124450 973460 417210 556240 0 0 0 24031 2494 25071;25072 126792;126793;126794;126795;126796;126797;126798;126799;126800;126801;126802;126803;126804;126805 127842;127843;127844;127845;127846;127847;127848;127849 127845 1179 8 MDENQFVAVTSTNAAK ERMSVIWDKAVVTGKMDENQFVAVTSTNAA DENQFVAVTSTNAAKVFNLYPRKGRIAVGS K M D A K V 3 0 2 1 0 1 1 0 0 0 0 1 1 1 0 1 2 0 0 2 0 0 16 0 1724.8039 Q14195;H0YBT4;Q16555;A0A1C7CYX9 Q16555 375 390 DPYSL3;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2 no no 2 7.4814E-10 103.75 By MS/MS By matching By matching By MS/MS 2 2 1 1 0.99029 0.91408 22.558 6 Median 0.78887 0.72407 12.588 2 0 Median 1.1589 1.0098 25.121 2 0 Median 0.97888 0.98832 NaN 1 0 Median 1.3112 1.1192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68268000 37479000 30789000 46846000 26440000 20406000 7119900 3688200 3431700 12537000 6458900 6078400 1764900 892350 872590 0 0 0 0 0 0 24032 328;2864 25073 126806;126807;126808;126809;126810;126811 127850;127851;127852;127853;127854 127852 5 MDEPSPLAQPLELNQHSR ______________________________ PSPLAQPLELNQHSRFIIGSVSEDNSEDEI - M D S R F 1 1 1 1 0 2 2 0 1 0 3 0 1 0 3 2 0 0 0 0 0 0 18 0 2060.9949 Q13085;A0A0C4DGT1;A0A087X2F8;A0A087X126 Q13085 1 18 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.00047709 53.252 By MS/MS 1 0.47759 0.4788 NaN 1 Median 0.47759 0.4788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4818200 3512100 1306100 4818200 3512100 1306100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24033 2784 25074 126812 127855 127855 1 MDEQALLGLNPNADSDFR ______________________________ QALLGLNPNADSDFRQRALAYFEQLKISPD - M D F R Q 2 1 2 3 0 1 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 18 0 2004.9211 O43592;F8WDU6;F5GYW6 O43592 1 18 XPOT Exportin-T yes no 2 0.0046106 44.616 By MS/MS 1 0.83439 0.84135 NaN 1 Median 0.83439 0.84135 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1078200 538670 539570 1078200 538670 539570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24034 1576 25075 126813 127856 127856 1 MDETDASSAVK NLVYVVNYPKDNKRKMDETDASSAVKVKRA NKRKMDETDASSAVKVKRAVQKTSDLIVLG K M D V K V 2 0 0 2 0 0 1 0 0 0 0 1 1 0 0 2 1 0 0 1 0 0 11 0 1152.4969 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;A0A087WX29;K7EN94;A0A0A0N0M3;K7EJM5 Q13148 85 95 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 0.00016746 102.06 By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 3 0.96349 0.96652 16.689 13 Median NaN NaN NaN 0 0 Median 0.87359 0.77646 20.079 3 0 Median 0.89971 0.93731 2.5144 2 0 Median 1.1808 0.99382 14.426 3 0 Median 0.95703 0.95198 6.5927 2 0 Median 1.3631 1.1497 7.0598 3 0 Median 26947000 12939000 14008000 0 0 0 1577700 868840 708890 6136800 3002900 3133900 10063000 4402900 5659600 6494200 3494600 2999600 2675600 1169800 1505800 24035 2789 25076 126814;126815;126816;126817;126818;126819;126820;126821;126822;126823;126824;126825;126826 127857;127858;127859;127860;127861;127862;127863;127864;127865 127863 9 MDEVLYSIAEK VVIRFGHDWDPTCMKMDEVLYSIAEKVKNF TCMKMDEVLYSIAEKVKNFAVIYLVDITEV K M D E K V 1 0 0 1 0 0 2 0 0 1 1 1 1 0 0 1 0 0 1 1 0 0 11 0 1296.6272 P83876;K7EPA6;K7EJU2;K7EMX5;O14835;K7ES07 P83876 41 51 TXNL4A Thioredoxin-like protein 4A yes no 2 0.00013505 85.958 By matching By matching By MS/MS By matching 2 1 1 1 1.3351 1.2208 24.4 5 Median 1.3893 1.2975 8.6128 2 0 Median 1.3351 1.1137 NaN 1 0 Median 1.1105 1.0538 NaN 1 0 Median 2.3914 1.9466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42297000 18622000 23675000 3794400 1688000 2106400 2340100 928540 1411500 34837000 15712000 19125000 1326400 294220 1032200 0 0 0 0 0 0 24036 2662 25077 126827;126828;126829;126830;126831 127866;127867 127867 2 MDFEDDYTHSACR ______________________________ ______________________________ - M D C R N 1 1 0 3 1 0 1 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 13 0 1645.6137 Q5BKZ1;A0A0A0MRN4;E2QRN4 Q5BKZ1 1 13 ZNF326 DBIRD complex subunit ZNF326 yes no 2 0.00022352 80.763 By MS/MS 1 1.1136 1.163 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1136 1.163 NaN 1 0 Median NaN NaN NaN 0 0 Median 5078200 2376900 2701300 0 0 0 0 0 0 0 0 0 0 0 0 5078200 2376900 2701300 0 0 0 24037 3042 25078 126832 127868 127868 1 MDFQHRPGGK ______________________________ ______________________________ - M D G K T 0 1 0 1 0 1 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 10 1 1171.5557 Q15428;K7EMT0 Q15428 1 10 SF3A2 Splicing factor 3A subunit 2 yes no 3 0.0083981 42.348 By matching By MS/MS By matching By matching 1 2 3 1 0.95572 0.95041 17.042 7 Median NaN NaN NaN 0 0 Median 0.93753 0.85767 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97 0.89975 18.07 2 0 Median 0.95572 1.0612 19.592 3 0 Median 1.0461 0.95041 NaN 1 0 Median 20643000 10396000 10247000 0 0 0 4842300 2416500 2425800 0 0 0 2748400 1429100 1319300 10958000 5553700 5404000 2094900 997140 1097700 24038 2953 25079 126833;126834;126835;126836;126837;126838;126839 127869 127869 1 MDGIVPDIAVGTK ______________________________ ______________________________ - M D T K R 1 0 0 2 0 0 0 2 0 2 0 1 1 0 1 0 1 0 0 2 0 0 13 0 1314.6853 A0A0U1RRM4;P26599;A0A0D9SF20;K7EKJ7 A0A0U1RRM4 1 13 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 5.3925E-05 87.942 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 4 8 2 1 3 0.98235 0.86372 22.861 20 Median 1.2138 1.1847 27.647 2 0 Median 1.117 0.96065 27.586 4 0 Median 0.79128 0.7659 22.03 8 0 Median 1.1226 0.97128 8.2508 2 0 Median 0.78342 0.81504 NaN 1 0 Median 1.0098 0.84045 2.2871 3 0 Median 227900000 124620000 103280000 2592200 1173700 1418500 5144600 2476500 2668000 216790000 119260000 97535000 2142100 1056500 1085700 345400 217700 127700 882470 441830 440640 24039 312 25080;25081 126840;126841;126842;126843;126844;126845;126846;126847;126848;126849;126850;126851;126852;126853;126854;126855;126856;126857;126858;126859 127870;127871;127872;127873;127874;127875;127876;127877;127878 127873 150 9 MDGIVPDIAVGTKR ______________________________ ______________________________ - M D K R G 1 1 0 2 0 0 0 2 0 2 0 1 1 0 1 0 1 0 0 2 0 0 14 1 1470.7864 A0A0U1RRM4;P26599;A0A0D9SF20;K7EKJ7 A0A0U1RRM4 1 14 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 2.4001E-08 157.68 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 5 2 5 3 0.94137 0.89822 55.755 17 Median 0.94853 0.95188 27.591 2 0 Median 0.97424 0.88494 NaN 1 0 Median 0.79633 0.89822 103.24 5 2 Median 1.0912 1.0268 15.931 2 0 Median 0.86147 0.88215 10.423 4 1 Median 0.98118 0.89716 4.5447 3 0 Median 166030000 72399000 93626000 18695000 8733900 9960800 268360 133230 135130 116350000 47361000 68993000 1561600 703150 858460 26819000 14262000 12557000 2327200 1205800 1121500 24040 312 25082;25083 126860;126861;126862;126863;126864;126865;126866;126867;126868;126869;126870;126871;126872;126873;126874;126875;126876;126877 127879;127880;127881;127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898;127899;127900;127901;127902;127903 127882 150 25 MDGTYACSYTPVK QDGEGQRIDIQMKNRMDGTYACSYTPVKAI NRMDGTYACSYTPVKAIKHTIAVVWGGVNI R M D V K A 1 0 0 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 2 1 0 0 13 0 1491.6374 O75369;E7EN95 O75369 700 712 FLNB Filamin-B yes no 2 2.6283E-05 136.48 By MS/MS 1 1.3549 1.2058 NaN 1 Median NaN NaN NaN 0 0 Median 1.3549 1.2058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16786000 8329000 8456700 0 0 0 16786000 8329000 8456700 0 0 0 0 0 0 0 0 0 0 0 0 24041 1664 25084 126878 127904;127905 127904 2 MDHVYGLSTVYLNK SVPTLRSELNLLVEKMDHVYGLSTVYLNKL KMDHVYGLSTVYLNKLKTVDVIVRSIQDAE K M D N K L 0 0 1 1 0 0 0 1 1 0 2 1 1 0 0 1 1 0 2 2 0 0 14 0 1638.8076 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1137 1150 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.0011478 38.189 By matching By MS/MS 1 1 0.82604 0.85905 10.988 2 Median 0.79275 0.79483 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86073 0.92846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18277000 9622200 8654400 14013000 7333000 6679700 0 0 0 4263900 2289300 1974700 0 0 0 0 0 0 0 0 0 24042 1220 25085 126879;126880 127906;127907 127907 2 MDIDAPDVEVQGPDWHLK EGEMKVPDVEIKGPKMDIDAPDVEVQGPDW DAPDVEVQGPDWHLKMPKMKMPKFSMPGFK K M D L K M 1 0 0 4 0 1 1 1 1 1 1 1 1 0 2 0 0 1 0 2 0 0 18 0 2063.9622 Q09666 Q09666 1236 1253 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00087257 30.956 By MS/MS By MS/MS 1 1 0.83902 0.78251 7.4146 2 Median 0.74598 0.74254 NaN 1 0 Median 0.94366 0.82463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8003900 4307600 3696400 5568300 3080300 2488000 2435700 1227300 1208400 0 0 0 0 0 0 0 0 0 0 0 0 24043 2749 25086 126881;126882 127908;127909 127908 2 MDIDVPDVEVQGPDWHLK ESEIKVPDVELKSAKMDIDVPDVEVQGPDW DVPDVEVQGPDWHLKMPKMKMPKFSMPGFK K M D L K M 0 0 0 4 0 1 1 1 1 1 1 1 1 0 2 0 0 1 0 3 0 0 18 0 2091.9935 Q09666 Q09666 859 876 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 3.1989E-05 47.204 By matching By MS/MS 1 2 1.0343 0.90161 16.349 3 Median 0.76256 0.72506 NaN 1 0 Median 1.0925 0.94885 7.2224 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5084500 2414500 2670000 802490 399050 403440 4282000 2015400 2266600 0 0 0 0 0 0 0 0 0 0 0 0 24044 2749 25087 126883;126884;126885 127910 127910 1 MDIEQSLYK ERLQKMGESSLRNFRMDIEQSLYKFEGEDY SLRNFRMDIEQSLYKFEGEDYREKQKLGMV R M D Y K F 0 0 0 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 9 0 1125.5376 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 708 716 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.001584 79.906 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.94774 1.0082 18.711 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93896 1.0082 NaN 1 0 Median 1.6702 1.4125 NaN 1 1 Median 0.95616 0.99749 6.563 2 0 Median 0.94774 0.85675 NaN 1 0 Median 18338000 8764700 9573300 0 0 0 0 0 0 7309200 3793100 3516000 1796100 673800 1122300 7955300 3677200 4278100 1277400 620560 656840 24045 167;643 25088 126886;126887;126888;126889;126890 127911;127912;127913;127914;127915 127912 5 MDIRPNHTIYINNMNDK ______________________________ IRPNHTIYINNMNDKIKKEELKRSLYALFS - M D D K I 0 1 4 2 0 0 0 0 1 3 0 1 2 0 1 0 1 0 1 0 0 0 17 1 2087.9881 P08579 P08579 1 17 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 3 4.5211E-07 86.455 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 3 3 3 1 0.95025 0.91593 24.77 15 Median 0.95025 0.99 12.038 3 0 Median 1.1135 1.0429 10.044 2 0 Median 0.85793 0.90788 10.928 3 0 Median 1.0347 0.91593 52.031 3 0 Median 0.86205 0.91236 5.2555 3 0 Median 0.84379 0.7478 NaN 1 0 Median 187980000 97797000 90181000 41112000 21197000 19915000 3387000 1384400 2002600 85046000 45173000 39873000 13028000 5861100 7166500 42130000 22520000 19609000 3275700 1661000 1614700 24046 1904 25089;25090 126891;126892;126893;126894;126895;126896;126897;126898;126899;126900;126901;126902;126903;126904;126905 127916;127917;127918;127919;127920;127921;127922;127923;127924;127925;127926;127927;127928;127929 127924 673;674 14 MDKNASTFEDVTQVSSAYQK YSKGFGGKYGVQKDRMDKNASTFEDVTQVS STFEDVTQVSSAYQKTVPVEAVTSKTSNIR R M D Q K T 2 0 1 2 0 2 1 0 0 0 0 2 1 1 0 3 2 0 1 2 0 0 20 1 2248.0318 Q14247 Q14247 317 336 CTTN Src substrate cortactin yes yes 3 1.5489E-07 57.496 By MS/MS 5 1.1329 1.0899 48.441 5 Median 1.1329 1.0899 48.441 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31040000 14399000 16642000 31040000 14399000 16642000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24047 2868 25091 126906;126907;126908;126909;126910 127930;127931;127932 127931 3 MDKNELVQK ______________________________ ______________________________ - M D Q K A 0 0 1 1 0 1 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 9 1 1103.5645 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 1 9 YWHAZ 14-3-3 protein zeta/delta yes no 2 2.6829E-42 217.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 3 2 3 1.1154 1.0459 10.39 16 Median 1.1044 1.1213 6.8825 3 0 Median 1.0764 0.9787 8.9654 3 0 Median 1.0386 1.0317 2.3273 2 0 Median 1.1878 1.043 8.4851 3 0 Median 1.1375 1.208 1.5009 2 0 Median 1.1265 0.97767 11.828 3 0 Median 474630000 226750000 247880000 266290000 130430000 135860000 86246000 39337000 46909000 84892000 39824000 45069000 17069000 7736900 9332000 14004000 6588900 7414700 6130900 2834900 3296000 24048 2618 25092;25093 126911;126912;126913;126914;126915;126916;126917;126918;126919;126920;126921;126922;126923;126924;126925;126926 127933;127934;127935;127936;127937;127938;127939;127940;127941;127942;127943;127944 127942 1281 12 MDKVEDELKEK ELASKNKEIEKDKKRMDKVEDELKEKKKEL DKKRMDKVEDELKEKKKELGKMMREQQQIE R M D E K K 0 0 0 2 0 0 3 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 11 2 1362.6701 Q14683;G8JLG1;H0Y7K8 Q14683 256 266 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 5.5707E-05 91.961 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.2919 1.2675 25.098 6 Median 1.5294 1.6744 NaN 1 0 Median 1.3444 1.2769 NaN 1 0 Median 0.78065 0.93806 NaN 1 0 Median 1.4725 1.4925 24.136 2 0 Median 0.89223 1.0444 NaN 1 0 Median NaN NaN NaN 0 0 Median 20412000 9752800 10659000 1988000 732610 1255400 3271200 1317500 1953700 6757300 3952500 2804800 3880700 1532000 2348600 4514400 2218200 2296200 0 0 0 24049 2889 25094 126927;126928;126929;126930;126931;126932 127945;127946;127947;127948;127949;127950;127951 127951 7 MDLAAAAEPGAGSQHLEVR ______________________________ AAAEPGAGSQHLEVRDEVAEKCQKLFLDFL - M D V R D 5 1 0 1 0 1 2 2 1 0 2 0 1 0 1 1 0 0 0 1 0 0 19 0 1921.9316 Q14566 Q14566 1 19 MCM6 DNA replication licensing factor MCM6 yes yes 2 1.1506E-07 65.563 By MS/MS By MS/MS 1 1 0.63996 0.65378 9.7067 2 Median 0.62762 0.61042 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65254 0.70023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6050600 3554400 2496200 3240600 1811800 1428800 0 0 0 2810100 1742700 1067400 0 0 0 0 0 0 0 0 0 24050 2881 25095 126933;126934 127952;127953;127954;127955 127953 4 MDLAAAAEPGAGSQHLEVRDEVAEK ______________________________ AGSQHLEVRDEVAEKCQKLFLDFLEEFQSS - M D E K C 6 1 0 2 0 1 4 2 1 0 2 1 1 0 1 1 0 0 0 2 0 0 25 1 2593.2442 Q14566 Q14566 1 25 MCM6 DNA replication licensing factor MCM6 yes yes 3 1.0813E-18 77.053 By MS/MS By matching By MS/MS 3 1 2 0.66695 0.74488 26.335 6 Median 0.71682 0.74955 15.028 3 0 Plateau 1.2407 1.2437 NaN 1 0 Median 0.66354 0.75155 2.1915 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69165000 39582000 29583000 34039000 19347000 14692000 1268700 515230 753450 33857000 19720000 14137000 0 0 0 0 0 0 0 0 0 24051 2881 25096;25097 126935;126936;126937;126938;126939;126940 127956;127957;127958;127959;127960;127961;127962 127957 1573 7 MDLDEQLK TGVLLSIDGEDGIVRMDLDEQLKILNLRFL GEDGIVRMDLDEQLKILNLRFLGKLLEA__ R M D L K I 0 0 0 2 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 8 0 990.4692 O00267 O00267 1067 1074 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.008272 63.565 By matching By matching By MS/MS By matching 1 1 1 1 0.95481 0.88631 23.751 4 Median 0.81818 0.80622 NaN 1 0 Median 1.4292 1.3574 NaN 1 0 Median 0.77462 0.83887 NaN 1 0 Median 1.1143 0.93643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11131000 6327100 4803600 3609500 2170400 1439200 1574500 736370 838170 5236500 3092100 2144400 710140 328190 381940 0 0 0 0 0 0 24052 1452 25098 126941;126942;126943;126944 127963;127964 127964 2 MDLEKPNYIVPDYMPVVYDK STEALYQVGKEFTSKMDLEKPNYIVPDYMP PNYIVPDYMPVVYDKLPQPPSHREAIVNSC K M D D K L 0 0 1 3 0 0 1 0 0 1 1 2 2 0 3 0 0 0 3 3 0 0 20 1 2428.1695 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3113 3132 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.3518E-07 67.358 By MS/MS By matching By matching 2 2 1 0.62775 0.68143 13.267 5 Median 0.60986 0.66294 3.8901 2 0 Median NaN NaN NaN 0 0 Median 0.56501 0.65671 19.368 2 0 Median 0.86601 0.80411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33445000 19210000 14235000 31057000 17692000 13364000 0 0 0 2220300 1427700 792620 167620 89886 77734 0 0 0 0 0 0 24053 2865 25099 126945;126946;126947;126948;126949 127965;127966;127967 127967 3 MDLFGDLPEPER ______________________________ ______________________________ - M D E R S 0 1 0 2 0 0 2 1 0 0 2 0 1 1 2 0 0 0 0 0 0 0 12 0 1417.6548 Q9H0C8;F8SNU7;E9PC05;F8SNU6 Q9H0C8 1 12 ILKAP;ILKAP3;ILKAP2 Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2 0.00064726 64.297 By matching By matching By MS/MS 1 1 2 0.71699 0.68588 11.311 4 Median 0.7658 0.74687 NaN 1 0 Median 0.78024 0.69944 NaN 1 0 Median 0.6261 0.62053 11.389 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2684500 1633500 1051000 157650 87528 70118 131390 93640 37753 2395500 1452400 943120 0 0 0 0 0 0 0 0 0 24054 3923 25100;25101 126950;126951;126952;126953 127968;127969;127970 127970 1851 3 MDLLSGNFLK QNTVDILLHHIFQERMDLLSGNFLKELSLI IFQERMDLLSGNFLKELSLIPFLCPERAPA R M D L K E 0 0 1 1 0 0 0 1 0 0 3 1 1 1 0 1 0 0 0 0 0 0 10 0 1136.59 Q9NZJ4 Q9NZJ4 3637 3646 SACS Sacsin yes yes 2 0.06474 26.105 By matching By MS/MS 1 1 0.77871 0.80243 52.189 2 Median 0.57667 0.5548 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0515 1.1606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1731500 626040 1105500 755170 196090 559080 0 0 0 976340 429960 546380 0 0 0 0 0 0 0 0 0 24055 4189 25102 126954;126955 127971 127971 1 MDLNSEQAEQLER LSKVQKNHVGKPLLKMDLNSEQAEQLERIN LKMDLNSEQAEQLERINDALSCEYECRRRM K M D E R I 1 1 1 1 0 2 3 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 13 0 1561.7042 Q52LJ0 Q52LJ0 197 209 FAM98B Protein FAM98B yes yes 2 2.4541E-113 282.95 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 3 3 1 1 0.99526 0.96224 14.857 11 Median 0.8337 0.79977 NaN 1 0 Median 0.99141 0.84237 24.805 2 0 Median 0.99526 0.98415 11.831 3 1 Median 1.2307 1.0591 6.8154 3 0 Median 0.81588 0.82187 NaN 1 0 Median 0.95571 0.82077 NaN 1 0 Median 209290000 99853000 109440000 9819000 5432400 4386600 6913400 3886400 3027000 107130000 52940000 54193000 81576000 35658000 45918000 3097600 1544200 1553400 751370 392140 359230 24056 3025 25103;25104 126956;126957;126958;126959;126960;126961;126962;126963;126964;126965;126966 127972;127973;127974;127975;127976;127977;127978;127979;127980;127981;127982 127978 1653 11 MDLQIGTEK MDEKEEKEFNTKETRMDLQIGTEKAEKNEG NTKETRMDLQIGTEKAEKNEGRMDAEKVEK R M D E K A 0 0 0 1 0 1 1 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 9 0 1033.5114 Q14966 Q14966 1322 1330 ZNF638 Zinc finger protein 638 yes yes 2 0.0008049 96.948 By MS/MS By matching 1 1 1.0687 1.0734 2.5787 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98641 1.0932 NaN 1 0 Median 1.1578 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9462000 4764200 4697900 0 0 0 0 0 0 8253600 4117000 4136600 1208500 647190 561300 0 0 0 0 0 0 24057 2903 25105 126967;126968 127983 127983 1 MDLVTYFGK KELRQFVPGDEPREKMDLVTYFGKRPPGVL DEPREKMDLVTYFGKRPPGVLHCTTKFCDY K M D G K R 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 1 0 1 1 0 0 9 0 1072.5263 P09543 P09543 236 244 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.039605 33.797 By MS/MS By matching By matching By matching By matching 2 1 2 1 1 1.2135 1.1629 15.678 7 Median 1.0416 0.99655 1.3723 2 0 Median 1.2334 1.0619 NaN 1 0 Median 1.1984 1.2797 13.529 2 0 Median 1.7314 1.4672 NaN 1 0 Median 1.2135 1.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median 14310000 7062100 7247900 7669500 3968200 3701300 3098000 1432800 1665300 2856800 1419300 1437500 282090 76061 206030 403470 165760 237710 0 0 0 24058 1918 25106 126969;126970;126971;126972;126973;126974;126975 127984 127984 1 MDMSLDDIIK ______________________________ ______________________________ K M D I K L 0 0 0 3 0 0 0 0 0 2 1 1 2 0 0 1 0 0 0 0 0 0 10 0 1179.5515 Q86V81;E9PB61 Q86V81 5 14 ALYREF THO complex subunit 4 yes no 2 0.0015352 64.654 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.2891 1.1331 15.264 6 Median NaN NaN NaN 0 0 Median 1.2787 1.0776 NaN 1 0 Median 1.2178 1.165 8.1416 2 0 Median 1.3718 1.1675 NaN 1 0 Median 1.5677 1.5511 NaN 1 0 Median 1.2332 1.0029 NaN 1 0 Median 37830000 17013000 20817000 0 0 0 1902700 829660 1073100 28646000 13092000 15555000 1058000 437100 620940 288110 124850 163260 5935100 2529700 3405300 24059 3286 25107 126976;126977;126978;126979;126980;126981 127985 127985 1 MDNDHVIDATLTGGPAR EKLYESQNRGVYMFRMDNDHVIDATLTGGP NDHVIDATLTGGPARYINHSCAPNCVAEVV R M D A R Y 2 1 1 3 0 0 0 2 1 1 1 0 1 0 1 0 2 0 0 1 0 0 17 0 1781.8366 Q8NEZ4;H7BY37;H0Y765 Q8NEZ4 4829 4845 KMT2C Histone-lysine N-methyltransferase 2C yes no 3 0.0078504 24.041 By MS/MS 1 1.4752 1.574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4752 1.574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331200 3107300 3223900 0 0 0 0 0 0 6331200 3107300 3223900 0 0 0 0 0 0 0 0 0 24060 3431 25108 126982 127986;127987 127986 2 MDNLSSEEIQQR ______________________________ ______________________________ - M D Q R A 0 1 1 1 0 2 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 12 0 1448.6566 H3BNE1;H3BR18;H3BM38;H3BPJ0;O00161;H3BNG6;H3BU94 H3BNE1 1 12 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 2 0.0046473 53.683 By matching By MS/MS By MS/MS 1 1 1 1.1087 1.0114 11.538 2 Median NaN NaN NaN 0 0 Median 1.2833 1.0973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95786 0.93212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1374100 680550 693560 0 0 0 408910 179180 229730 0 0 0 0 0 0 965190 501360 463830 0 0 0 24061 1209 25109 126983;126984;126985 127988;127989 127989 2 MDPMNIWDDIITNR KRLLNTWTNRYPDAKMDPMNIWDDIITNRC KMDPMNIWDDIITNRCFFLSKIEEKLTPLP K M D N R C 0 1 2 3 0 0 0 0 0 3 0 0 2 0 1 0 1 1 0 0 0 0 14 0 1732.7913 P78527 P78527 3173 3186 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.054664 23.851 By MS/MS By matching By matching By matching 1 1 1 1 1.0025 0.92345 22.377 4 Median 0.81628 0.81604 NaN 1 0 Median 1.2435 1.1065 NaN 1 0 Median 0.61321 0.68348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2313 1.045 NaN 1 0 Median 1181000 633300 547660 794140 448190 345960 93299 37991 55307 194710 101900 92808 0 0 0 0 0 0 98810 45217 53592 24062 2647 25110 126986;126987;126988;126989 127990 127990 1 MDPNTIIEALR ______________________________ ______________________________ - M D L R G 1 1 1 1 0 0 1 0 0 2 1 0 1 0 1 0 1 0 0 0 0 0 11 0 1271.6544 O95373;E9PLJ0 O95373 1 11 IPO7 Importin-7 yes no 2 0.00015693 103.7 By MS/MS By MS/MS 6 1 1.043 1.0357 19.182 5 Median 1.043 1.0357 19.182 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25040000 12560000 12480000 25040000 12560000 12480000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24063 1768 25111;25112 126990;126991;126992;126993;126994;126995;126996 127991;127992;127993;127994 127991 568 4 MDPVAYR GEATLRMKLVMEDGKMDPVAYRVKYTPHHR KLVMEDGKMDPVAYRVKYTPHHRTGDKWCI K M D Y R V 1 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 7 0 850.40072 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQQ5;A0A1B0GTT3 P47897 413 419 QARS Glutamine--tRNA ligase yes no 2 0.053104 38.818 By matching By MS/MS 1 1 1.0946 1.0175 14.577 2 Median 1.1314 1.128 NaN 1 0 Median 1.059 0.91784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3547300 1648200 1899100 752670 332210 420460 2794600 1316000 1478600 0 0 0 0 0 0 0 0 0 0 0 0 24064 2356 25113 126997;126998 127995 127995 1 MDQVMQFVEPSR ______________________________ ______________________________ - M D S R Q 0 1 0 1 0 2 1 0 0 0 0 0 2 1 1 1 0 0 0 2 0 0 12 0 1465.6694 P60059 P60059 1 12 SEC61G Protein transport protein Sec61 subunit gamma yes yes 2 2.9104E-06 118.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 7 5 6 1 1.063 0.94044 13.688 24 Median 0.90656 0.87805 10.121 6 0 Median 1.1621 0.93993 3.457 7 0 Median 0.97411 0.97379 4.187 5 0 Median 1.2981 0.93752 24.93 5 0 Median 1.0802 1.0987 NaN 1 0 Median NaN NaN NaN 0 0 Median 51521000 24165000 27356000 4981700 2530500 2451200 32376000 14746000 17630000 9962300 4877100 5085200 2766200 1242800 1523500 1434800 768890 665950 0 0 0 24065 2522 25114;25115;25116 126999;127000;127001;127002;127003;127004;127005;127006;127007;127008;127009;127010;127011;127012;127013;127014;127015;127016;127017;127018;127019;127020;127021;127022;127023;127024;127025 127996;127997;127998;127999;128000;128001;128002;128003;128004;128005;128006;128007;128008;128009;128010;128011;128012;128013;128014;128015;128016;128017;128018 128009 1202;1203 23 MDQYFNQMEK TTIGKDLDFEKAKPRMDQYFNQMEKIIKEK KAKPRMDQYFNQMEKIIKEKKTSSRIRFML R M D E K I 0 0 1 1 0 2 1 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 10 0 1332.5479 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044;A0A0U1RQK7;A0A0A0MSA7;O43432 E7EX73 792 801 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 no no 2 0.00038273 109.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 3 1 1 1.2074 1.0955 34.869 14 Median 1.1407 1.1001 7.186 2 0 Median 1.1038 0.95726 33.679 4 0 Median 1.3363 1.4763 31.817 3 0 Plateau 1.3671 1.1477 40.477 3 0 Median 2.0371 2.1465 NaN 1 0 Median 1.0718 0.89567 NaN 1 0 Median 88512000 39945000 48567000 42117000 19618000 22499000 25448000 11711000 13737000 13030000 5415500 7614600 4502100 2039100 2463000 2982400 967280 2015100 432500 193600 238900 24066 894;300 25117 127026;127027;127028;127029;127030;127031;127032;127033;127034;127035;127036;127037;127038;127039 128019;128020;128021;128022;128023;128024;128025;128026;128027;128028 128026 9 MDRNVEMFMNIEK NEQGWRRFDLQNPSRMDRNVEMFMNIEKTL SRMDRNVEMFMNIEKTLVQNNCLTRPNIYL R M D E K T 0 1 2 1 0 0 2 0 0 1 0 1 3 1 0 0 0 0 0 1 0 0 13 1 1655.747 Q92922 Q92922 145 157 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3 0.0058532 31.827 By MS/MS 1 1.2864 1.46 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2864 1.46 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3262700 1269900 1992900 0 0 0 0 0 0 3262700 1269900 1992900 0 0 0 0 0 0 0 0 0 24067 3567 25118 127040 128029 128029 1 MDRNVEMFMTIEK SDQGWRRYDFQNPSRMDRNVEMFMTIEKSL SRMDRNVEMFMTIEKSLVQNNCLSRPNIFL R M D E K S 0 1 1 1 0 0 2 0 0 1 0 1 3 1 0 0 1 0 0 1 0 0 13 1 1642.7517 Q8TAQ2;F8VXC8 Q8TAQ2 117 129 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.019812 41.54 By MS/MS 1 0.9467 1.0741 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9467 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3416300 1826500 1589800 0 0 0 0 0 0 3416300 1826500 1589800 0 0 0 0 0 0 0 0 0 24068 3455 25119 127041 128030;128031 128031 2 MDSAGQDINLNSPNK ______________________________ MDSAGQDINLNSPNKGLLSDSMTDVPVDTG - M D N K G 1 0 3 2 0 1 0 1 0 1 1 1 1 0 1 2 0 0 0 0 0 0 15 0 1602.7308 O43399;A0A087WYR3;A0A087WZ51 O43399 1 15 TPD52L2 Tumor protein D54 yes no 2 1.7164E-09 123.8 By MS/MS By matching By matching 2 1 1 1.0255 0.93816 24.698 4 Median 0.79686 0.74671 36.039 2 1 Median 1.0808 0.91718 NaN 1 0 Median 1.0136 0.95961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30180000 14783000 15397000 23745000 11888000 11857000 1925600 912200 1013400 4509800 1983400 2526400 0 0 0 0 0 0 0 0 0 24069 1571 25120 127042;127043;127044;127045 128032;128033;128034 128033 3 MDSFDEDLAR KSSFSITREAQVNVRMDSFDEDLARPSGLL QVNVRMDSFDEDLARPSGLLAQERKLCRDL R M D A R P 1 1 0 3 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 10 0 1197.4972 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 573 582 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.0051177 66.435 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 2 1.1917 1.0654 22.089 6 Median 0.76976 0.76032 NaN 1 0 Median 1.2893 1.1535 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90156 0.76961 NaN 1 1 Median 1.1862 1.2461 NaN 1 0 Median 1.3143 1.0837 13.636 2 0 Median 7364400 3686400 3678100 2088300 1221700 866570 266240 99473 166770 0 0 0 939450 430170 509280 3237000 1520500 1716500 833490 414530 418960 24070 439 25121 127046;127047;127048;127049;127050;127051 128035;128036 128036 2 MDSFDEDLARPSGLLAQER KSSFSITREAQVNVRMDSFDEDLARPSGLL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R M D E R K 2 2 0 3 0 1 2 1 0 0 3 0 1 1 1 2 0 0 0 0 0 0 19 1 2149.011 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 573 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 3.6725E-14 108.56 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 0.97012 1.1028 12.908 8 Median 0.85792 0.95317 9.2501 2 0 Median NaN NaN NaN 0 0 Median 0.94934 1.1546 3.7083 2 0 Median 1.2824 1.2555 NaN 1 0 Median 1.0172 1.1028 0.89094 2 0 Median 0.96569 0.87298 NaN 1 0 Median 38814000 19061000 19752000 6516500 3251500 3265000 0 0 0 15135000 7272200 7862500 189610 83195 106420 16768000 8345000 8422900 205010 109360 95658 24071 439 25122;25123 127052;127053;127054;127055;127056;127057;127058;127059 128037;128038;128039;128040;128041;128042;128043;128044;128045 128040 196 9 MDSLVTANTK ______________________________ ______________________________ - M D T K F 1 0 1 1 0 0 0 0 0 0 1 1 1 0 0 1 2 0 0 1 0 0 10 0 1078.5329 Q96P63 Q96P63 1 10 SERPINB12 Serpin B12 yes yes 2 0.00056413 93.111 By MS/MS 1 0.29651 0.22138 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29651 0.22138 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1817200 1182000 635230 0 0 0 0 0 0 0 0 0 1817200 1182000 635230 0 0 0 0 0 0 24072 3710 25124 127060 128046 128046 1 MDSTANEVEAVK LGETYKDHENIVIAKMDSTANEVEAVKVHS IAKMDSTANEVEAVKVHSFPTLKFFPASAD K M D V K V 2 0 1 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 2 0 0 12 0 1292.5918 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 425 436 P4HB Protein disulfide-isomerase yes no 2 4.28E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2578 1.1696 6.3053 6 Median 1.1818 1.0953 0.76665 2 0 Median 1.4893 1.2524 2.9287 2 0 Median 1.1851 1.196 NaN 1 0 Median 1.3327 1.1437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117880000 49373000 68503000 59671000 26809000 32862000 50410000 19131000 31279000 4426500 2098000 2328500 3368000 1334700 2033300 0 0 0 0 0 0 24073 1883 25125 127061;127062;127063;127064;127065;127066 128047;128048;128049;128050;128051;128052;128053;128054;128055;128056;128057 128049 11 MDSTEPPYSQK AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE GVNKMDSTEPPYSQKRYEEIVKEVSTYIKK K M D Q K R 0 0 0 1 0 1 1 0 0 0 0 1 1 0 2 2 1 0 1 0 0 0 11 0 1281.5547 P68104;Q5VTE0;A0A087WV01 P68104 155 165 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2 0.00018232 77.677 By MS/MS By MS/MS By MS/MS 1 1 2 0.68646 0.60918 17.326 4 Median 0.80747 0.78941 NaN 1 0 Median 0.62628 0.5338 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68646 0.60918 9.7357 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11747000 6870300 4877000 1474500 957610 516850 4029600 2351300 1678400 0 0 0 6243300 3561400 2681800 0 0 0 0 0 0 24074 2632 25126 127067;127068;127069;127070 128058;128059;128060 128059 3 MDSTLTASEIR ______________________________ ______________________________ - M D I R Q 1 1 0 1 0 0 1 0 0 1 1 0 1 0 0 2 2 0 0 0 0 0 11 0 1222.5864 P49588 P49588 1 11 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.00030061 72.643 By MS/MS By matching 2 1 1.0594 1.0082 24.428 3 Median 1.0532 1.0017 0.91015 2 0 Median 1.7235 1.5291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17667000 8550500 9116200 17212000 8436400 8775800 454470 114080 340390 0 0 0 0 0 0 0 0 0 0 0 0 24075 2385 25127 127071;127072;127073 128061;128062 128062 2 MDSTNADALYVR GRYPEAQSVASDILRMDSTNADALYVRGLC ILRMDSTNADALYVRGLCLYYEDCIEKAVQ R M D V R G 2 1 1 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 12 0 1354.6187 Q99615;K7ESP1;K7EIH8;K7EPP7 Q99615 205 216 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 3.99E-06 163.77 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.331 1.2557 14.025 5 Median 1.331 1.2557 NaN 1 0 Median 1.2652 1.0949 NaN 1 0 Median 1.3325 1.3495 NaN 1 0 Median 1.5608 1.3222 22.289 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45113000 18986000 26128000 26528000 11342000 15186000 6722200 2665900 4056300 8209200 3449600 4759500 3654000 1527600 2126400 0 0 0 0 0 0 24076 3759 25128 127074;127075;127076;127077;127078 128063;128064;128065;128066;128067;128068;128069 128063 7 MDTDLETMDLDQGGEALAPR IREERSRRERVRQSRMDTDLETMDLDQGGE ETMDLDQGGEALAPRQVLDLEDLVFTQGSH R M D P R Q 2 1 0 4 0 1 2 2 0 0 3 0 2 0 1 0 2 0 0 0 0 0 20 0 2176.9616 O75643;A0A494C1A5 O75643 387 406 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 1.3375E-21 120.14 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 1 0.83753 0.87824 15.917 11 Median 0.87287 0.87824 17.459 3 1 Median NaN NaN NaN 0 0 Median 0.76837 0.83775 20.579 5 3 Median 1.0449 0.91366 3.9849 2 0 Median 0.75195 0.78968 NaN 1 0 Median NaN NaN NaN 0 0 Median 42918000 23567000 19351000 11419000 5928500 5490900 0 0 0 28023000 15592000 12432000 862500 389630 472860 2612600 1657000 955600 0 0 0 24077 1688 25129;25130 127079;127080;127081;127082;127083;127084;127085;127086;127087;127088;127089 128070;128071;128072;128073;128074;128075;128076;128077;128078;128079;128080 128079 552;553 11 MDTIDQDDELIR RQKRWWNAYILFYERMDTIDQDDELIRYIS YERMDTIDQDDELIRYISELAITTRPHQII R M D I R Y 0 1 0 4 0 1 1 0 0 2 1 0 1 0 0 0 1 0 0 0 0 0 12 0 1462.661 Q93008 Q93008 1956 1967 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 1.0059E-09 177.06 By MS/MS By MS/MS By matching 1 2 1 1.0405 0.99021 9.4581 4 Median 0.98669 0.9261 NaN 1 0 Median 1.1799 0.97178 12.123 2 0 Median 0.97 1.077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27339000 13021000 14318000 13498000 6453900 7044600 11693000 5319200 6373500 2148100 1247800 900320 0 0 0 0 0 0 0 0 0 24078 3573 25131 127090;127091;127092;127093 128081;128082;128083;128084;128085;128086 128081 6 MDTLAHVLYYPQKPLVTTR GKQAMGVYITNFHVRMDTLAHVLYYPQKPL AHVLYYPQKPLVTTRSMEYLRFRELPAGIN R M D T R S 1 1 0 1 0 1 0 0 1 0 3 1 1 0 2 0 3 0 2 2 0 0 19 1 2245.1929 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 737 755 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 3.6102E-08 68.567 By matching By matching By MS/MS By matching By matching 1 1 1 1 2 0.7388 0.80128 10.837 6 Median 0.69891 0.72761 NaN 1 0 Median 0.82302 0.79293 NaN 1 0 Median 0.71459 0.80972 NaN 1 0 Median 1.0269 0.98691 NaN 1 0 Median 0.72423 0.80948 9.2141 2 0 Median NaN NaN NaN 0 0 Median 22165000 13083000 9082200 6477500 4541600 1935900 463330 248250 215080 8492000 4456800 4035200 274660 145070 129590 6457400 3691000 2766400 0 0 0 24079 671 25132 127094;127095;127096;127097;127098;127099 128087 128087 1 MDVGELLSYQPNR ______________________________ ______________________________ - M D N R G 0 1 1 1 0 1 1 1 0 0 2 0 1 0 1 1 0 0 1 1 0 0 13 0 1520.7293 Q8WYA6;A0A087WUB9 Q8WYA6 1 13 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.00017989 77.379 By MS/MS By matching By MS/MS 1 1 3 0.88824 0.90989 26.501 5 Median 1.1111 1.1249 NaN 1 0 Median 1.0943 0.98026 NaN 1 0 Median 0.88824 0.90835 28.156 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13819000 6923000 6896400 1796700 825760 970910 285780 155430 130350 11737000 5941800 5795100 0 0 0 0 0 0 0 0 0 24080 28 25133;25134 127100;127101;127102;127103;127104 128088;128089 128089 11 2 MDVHDLFR ______________________________ ______________________________ - M D F R R 0 1 0 2 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 8 0 1031.4859 Q9Y2R4;A0A087X1P7;A0A087WTD6;A0A087X069 Q9Y2R4 1 8 DDX52 Probable ATP-dependent RNA helicase DDX52 yes no 2 0.00508 61.999 By matching By MS/MS By matching By matching By matching 1 2 1 2 2 1.0188 0.97582 28.259 8 Median NaN NaN NaN 0 0 Median 0.89846 0.80503 NaN 1 0 Median 1.0718 1.127 6.8352 2 0 Median 1.0189 0.88677 NaN 1 0 Median 1.3873 1.4291 0.40025 2 0 Median 0.88579 0.7506 21.186 2 0 Median 11195000 5287200 5907500 0 0 0 276280 129530 146750 8929200 4241600 4687600 124500 74333 50169 992760 450920 541840 871940 390780 481150 24081 4389 25135;25136 127105;127106;127107;127108;127109;127110;127111;127112 128090;128091;128092 128090 1957 3 MDVNIAPLR ______________________________ ______________________________ - M D L R A 1 1 1 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 9 0 1027.5485 O75915;F8WF90;C9JQU6;F8WF33 O75915 1 9 ARL6IP5 PRA1 family protein 3 yes no 2 0.002066 75.109 By MS/MS 3 0.9549 0.96432 8.4091 3 Median 0.9549 0.96432 8.4091 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14606000 7869200 6736700 14606000 7869200 6736700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24082 1705 25137 127113;127114;127115 128093;128094;128095 128094 3 MDVNVGDIDIEGPEGK EGDLKGPEIDVKAPKMDVNVGDIDIEGPEG DVNVGDIDIEGPEGKLKGPKFKMPEMHFKA K M D G K L 0 0 1 3 0 0 2 3 0 2 0 1 1 0 1 0 0 0 0 2 0 0 16 0 1686.7771 Q09666 Q09666 1620 1635 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.2114E-09 103.88 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 1 1 1 1.0614 1.0171 15.241 10 Median 1.065 1.0422 2.8677 2 0 Median 1.0333 0.90838 6.6962 2 0 Median 0.94496 1.0483 10.927 3 0 Median 1.0628 0.97897 NaN 1 0 Median 1.3496 1.4021 NaN 1 0 Median 0.96974 0.84636 NaN 1 0 Median 38931000 16796000 22135000 25873000 10687000 15186000 4245100 2000800 2244200 7523300 3534300 3989000 431210 209740 221470 743670 315790 427880 114460 48443 66021 24083 2749 25138;25139 127116;127117;127118;127119;127120;127121;127122;127123;127124;127125 128096;128097;128098;128099;128100;128101;128102 128101 1461 4 MDYEDDR YDHGSRSQESGYYDRMDYEDDRLRDGERCR QESGYYDRMDYEDDRLRDGERCRDDSFFGE R M D D R L 0 1 0 3 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 7 0 942.33891 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 217 223 MATR3 Matrin-3 yes no 2 0.059615 37.558 By matching By matching By MS/MS 1 1 1 0.95379 1.0133 3.0884 3 Median NaN NaN NaN 0 0 Median 1.0894 0.96143 NaN 1 0 Median 0.95379 1.0133 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95079 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median 2938800 1277800 1661000 0 0 0 919890 391390 528500 827560 325170 502380 0 0 0 1191400 561280 630120 0 0 0 24084 297 25140 127126;127127;127128 128103 128103 1 MDYEDDRLR YDHGSRSQESGYYDRMDYEDDRLRDGERCR SGYYDRMDYEDDRLRDGERCRDDSFFGETS R M D L R D 0 2 0 3 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 1 1211.5241 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 217 225 MATR3 Matrin-3 yes no 2;3 0.00042438 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 3 5 2 1.0214 1.0962 17.226 17 Median NaN NaN NaN 0 0 Median 1.1924 1.1496 21.89 2 0 Median 0.9613 1.1108 22.426 5 0 Median 1.3114 1.302 17.881 3 0 Plateau 0.95909 1.0421 14.267 5 0 Median 1.3133 1.1872 11.282 2 0 Median 119430000 57553000 61875000 0 0 0 14660000 6584000 8075900 33312000 16902000 16409000 7167000 3271000 3896000 60824000 29347000 31478000 3465200 1449600 2015600 24085 297 25141 127129;127130;127131;127132;127133;127134;127135;127136;127137;127138;127139;127140;127141;127142;127143;127144;127145 128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114;128115;128116;128117;128118;128119;128120;128121 128107 18 MDYEDDRLRDGER YDHGSRSQESGYYDRMDYEDDRLRDGERCR DRMDYEDDRLRDGERCRDDSFFGETSHNYH R M D E R C 0 3 0 4 0 0 2 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 13 2 1668.7162 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 217 229 MATR3 Matrin-3 yes no 3;4 0.0087294 27.409 By matching By MS/MS By MS/MS 2 2 2 0.96286 1.0402 19.155 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1229 1.3622 5.9443 2 0 Median NaN NaN NaN 0 0 Median 0.82505 0.95383 0.69445 2 0 Median 0.97274 0.9993 17.25 2 0 Median 19948000 10220000 9727600 0 0 0 0 0 0 2654700 1152300 1502500 0 0 0 15345000 8056400 7289000 1947500 1011300 936160 24086 297 25142 127146;127147;127148;127149;127150;127151 128122;128123;128124;128125 128123 4 MDYVEINIDHK AQEQIEGMVKDLINRMDYVEINIDHKFHRH LINRMDYVEINIDHKFHRHLIGKSGANINR R M D H K F 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 0 0 0 1 1 0 0 11 0 1375.6442 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 435 445 HDLBP Vigilin yes no 2;3 4.6118E-05 123.86 By MS/MS By matching By MS/MS By matching 3 2 1 3 1.144 1.0016 18.184 9 Median 1.2628 1.2168 17.538 3 0 Plateau 1.1163 0.97978 3.1169 2 0 Median 1.1799 1.2757 NaN 1 0 Median 1.0691 0.96319 21.59 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40446000 18915000 21530000 31309000 14546000 16763000 4327300 2096300 2231000 2681600 1224400 1457200 2127700 1048600 1079000 0 0 0 0 0 0 24087 4 25143 127152;127153;127154;127155;127156;127157;127158;127159;127160 128126;128127;128128;128129;128130 128127 5 MEAAAEPGNLAGVR ______________________________ ______________________________ - M E V R H 4 1 1 0 0 0 2 2 0 0 1 0 1 0 1 0 0 0 0 1 0 0 14 0 1384.6769 Q9Y5Y2;H3BNF0;H3BRK5;H3BMW1 Q9Y5Y2 1 14 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 6.5731E-07 120.06 By MS/MS By MS/MS By MS/MS 2 1 1 0.97476 0.98688 27.679 4 Median 0.82341 0.83222 13.216 2 0 Median NaN NaN NaN 0 0 Median 1.1195 1.0659 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4704 1.458 NaN 1 1 Median NaN NaN NaN 0 0 Median 23300000 11856000 11444000 16037000 8617500 7419600 0 0 0 3302900 1490300 1812600 0 0 0 3960300 1748300 2212000 0 0 0 24088 4472 25144 127161;127162;127163;127164 128131;128132;128133 128131 3 MEADPDGQQPEK GPDEPEKLEGAEEEKMEADPDGQQPEKAEN EEKMEADPDGQQPEKAENKVENETDEGDKA K M E E K A 1 0 0 2 0 2 2 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 12 0 1343.5663 Q92922 Q92922 781 792 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.012077 36.334 By matching By MS/MS 1 2 0.84764 0.7098 18.801 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56765 0.61128 NaN 1 0 Median 0.92251 0.79397 15.848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1645000 869540 775440 0 0 0 0 0 0 359230 226290 132940 1285800 643250 642500 0 0 0 0 0 0 24089 3567 25145 127165;127166;127167 128134;128135 128135 2 MEADPELSK ASAQSEAEKERIMGKMEADPELSKFLYQLH ERIMGKMEADPELSKFLYQLHETEKEDLIR K M E S K F 1 0 0 1 0 0 2 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 9 0 1018.4641 O75643;A0A494C1A5 O75643 350 358 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0032693 66.27 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 0.9142 0.89641 10.655 5 Median 1.0121 0.95804 NaN 1 0 Median 0.9142 0.80802 NaN 1 0 Median 0.80588 0.89641 NaN 1 0 Median 1.0303 0.93601 NaN 1 0 Median 0.70881 0.74369 NaN 1 0 Median NaN NaN NaN 0 0 Median 15216000 8080200 7135600 943320 485000 458320 2068800 937340 1131500 6409800 3671600 2738300 1463500 645570 817950 4330400 2340800 1989600 0 0 0 24090 1688 25146 127168;127169;127170;127171;127172 128136;128137;128138;128139;128140 128136 5 MEAENLASVIDAR SISHVLVQLPHVFQRMEAENLASVIDARFN QRMEAENLASVIDARFNFFVNKILPQYRDA R M E A R F 3 1 1 1 0 0 2 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 13 0 1417.6871 Q68CQ4 Q68CQ4 582 594 DIEXF Digestive organ expansion factor homolog yes yes 2 1.9408E-05 94.616 By MS/MS By matching 1 1 0.86332 0.82724 28.848 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95048 1.0144 NaN 1 0 Median 0.78416 0.6746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6216600 3107100 3109500 0 0 0 0 0 0 5127600 2528100 2599500 1089000 579020 510020 0 0 0 0 0 0 24091 3123 25147 127173;127174 128141;128142 128142 2 MEAFVVYR PPGPPPEIVIYQELRMEAFVVYRWQGDARQ VIYQELRMEAFVVYRWQGDARQKALKDLLK R M E Y R W 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 2 0 0 8 0 1013.5004 Q14914;F2Z3J9 Q14914 267 274 PTGR1 Prostaglandin reductase 1 yes no 2 4.1719E-06 119.89 By MS/MS By MS/MS By matching 2 1 1 0.89374 0.79297 19.597 4 Median 0.69238 0.67541 14.143 2 1 Median 1.1647 0.9707 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0013 0.84238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26390000 14673000 11717000 21183000 12391000 8791600 5116100 2237700 2878400 0 0 0 90766 43522 47243 0 0 0 0 0 0 24092 995 25148 127175;127176;127177;127178 128143;128144;128145;128146 128143 4 MEALILEPSLYTVK ______________________________ ______________________________ - M E V K A 1 0 0 0 0 0 2 0 0 1 3 1 1 0 1 1 1 0 1 1 0 0 14 0 1605.8688 F8VVA7;P61923;F8VXB1;F8VUC5;F8W156;F8W651;F8VYZ4 F8VVA7 1 14 COPZ1 Coatomer subunit zeta-1 yes no 2 0.0004238 70.977 By MS/MS By MS/MS By matching 2 1 1 1.0162 0.88051 15.999 4 Median NaN NaN NaN 0 0 Median 1.0162 0.88051 3.4358 2 0 Median 1.1233 1.0803 NaN 1 0 Median 0.91102 0.73246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5647700 2762400 2885300 0 0 0 3890400 1953200 1937200 1638000 754070 883920 119330 55154 64179 0 0 0 0 0 0 24093 1067 25149;25150 127179;127180;127181;127182 128147;128148;128149;128150;128151 128151 361 5 MEDDKVAEAAIQIFR FHSAETYESLLQCLRMEDDKVAEAAIQIFR MEDDKVAEAAIQIFRNTGHKIETDLPQIRS R M E F R N 3 1 0 2 0 1 2 0 0 2 0 1 1 1 0 0 0 0 0 1 0 0 15 1 1734.8611 Q29RF7 Q29RF7 689 703 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 1.0654E-05 92.866 By matching By MS/MS By matching By matching 1 2 2 1 1.0523 0.97614 37.684 6 Median NaN NaN NaN 0 0 Median 1.1307 1.0996 NaN 1 0 Median 0.84075 0.95233 29.872 2 0 Median 1.1318 1.0003 20.3 2 0 Median NaN NaN NaN 0 0 Median 0.53048 0.43848 NaN 1 0 Median 12137000 6241700 5894800 0 0 0 190420 74040 116380 11525000 5961500 5563800 230000 104420 125580 0 0 0 190940 101830 89111 24094 3003 25151 127183;127184;127185;127186;127187;127188 128152;128153;128154 128154 3 MEDETQKELETMR WIDKWIDLTMEDIRRMEDETQKELETMRKR RRMEDETQKELETMRKRGSVRGTSAADV__ R M E M R K 0 1 0 1 0 1 4 0 0 0 1 1 2 0 0 0 2 0 0 0 0 0 13 1 1638.7229 P48739;A0A0A0MSW4 P48739 246 258 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 3 0.0019073 38.366 By matching By MS/MS 1 1 0.88498 0.8386 0.63139 2 Median 0.84555 0.84236 NaN 1 0 Median 0.92626 0.83487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7831700 3713700 4118100 4221800 1964300 2257500 3610000 1749400 1860600 0 0 0 0 0 0 0 0 0 0 0 0 24095 2368 25152 127189;127190 128155;128156 128155 2 MEDEVVR ______________________________ ______________________________ - M E V R F 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 7 0 876.40112 A0A1W2PPZ5;P23193;A0A1W2PRL9;E5RIS7;E5RJ93;E5RK46;A0A1W2PS15;E5RFI1;A0A1W2PPV7;B7Z4S1 A0A1W2PPZ5 1 7 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.032028 49.358 By matching By MS/MS By matching 1 1 1 1.2049 1.0758 10.523 3 Median NaN NaN NaN 0 0 Median 1.2049 1.0808 NaN 1 0 Median 0.923 0.89865 NaN 1 0 Median 1.2386 1.0758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2680800 1445900 1235000 0 0 0 75986 37855 38131 2027200 1134100 893130 577600 273910 303690 0 0 0 0 0 0 24096 341 25153 127191;127192;127193 128157 128157 1 MEDGEFWMSFR WNNVDPYERDQLRVKMEDGEFWMSFRDFMR LRVKMEDGEFWMSFRDFMREFTRLEICNLT K M E F R D 0 1 0 1 0 0 2 1 0 0 0 0 2 2 0 1 0 1 0 0 0 0 11 0 1433.5744 P07384 P07384 329 339 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00096639 61.65 By MS/MS By matching 1 1 1.2025 1.1201 8.648 2 Median 1.067 1.0537 NaN 1 0 Median 1.3554 1.1908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3621500 1706600 1914900 2120800 1008900 1111900 1500600 697650 802990 0 0 0 0 0 0 0 0 0 0 0 0 24097 1886 25154 127194;127195 128158;128159 128159 2 MEDGHQMLTHWTR VRQAMAILTPAVPARMEDGHQMLTHWTRKI ARMEDGHQMLTHWTRKIIVEEGHTVPQLVH R M E T R K 0 1 0 1 0 1 1 1 2 0 1 0 2 0 0 0 2 1 0 0 0 0 13 0 1640.7188 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1916 1928 TRRAP Transformation/transcription domain-associated protein yes no 3;4 0.00026443 61.038 By MS/MS 2 1.0483 1.1318 3.6559 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0483 1.1318 3.6559 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9045500 4723100 4322400 0 0 0 0 0 0 9045500 4723100 4322400 0 0 0 0 0 0 0 0 0 24098 991 25155 127196;127197 128160;128161;128162 128161 3 MEDHQHVPIDIQTSK ______________________________ MEDHQHVPIDIQTSKLLDWLVDRRHCSLKW - M E S K L 0 0 0 2 0 2 1 0 2 2 0 1 1 0 1 1 1 0 0 1 0 0 15 0 1776.8465 Q96JB5;J3KRI2;J3KRK4;J3KS63;J3QQY1 Q96JB5 1 15 CDK5RAP3 CDK5 regulatory subunit-associated protein 3 yes no 3 0.00014593 50.04 By MS/MS By matching By matching 1 1 1 0.9838 0.98716 18.98 3 Median 0.78234 0.73245 NaN 1 0 Median 1.2059 1.0419 NaN 1 0 Median 0.9838 0.98716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22503000 13029000 9474600 15819000 9507200 6311900 1598300 783150 815180 5085700 2738200 2347500 0 0 0 0 0 0 0 0 0 24099 3684 25156 127198;127199;127200 128163 128163 1 MEDMNEYSNIEEFAEGSK ______________________________ MNEYSNIEEFAEGSKINASKNQQDDGLKIL - M E S K I 1 0 2 1 0 0 5 1 0 1 0 1 2 1 0 2 0 0 1 0 0 0 18 0 2121.8507 A0A087WU03 A0A087WU03 1 18 HNRNPDL yes yes 2 3.1265E-06 70.622 By MS/MS By MS/MS 3 9 1.0207 1.0274 10.896 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0026 0.95925 9.6962 3 0 Median NaN NaN NaN 0 0 Median 1.0287 1.029 11.611 9 0 Median NaN NaN NaN 0 0 Median 58827000 27586000 31242000 0 0 0 0 0 0 7518600 3623000 3895600 0 0 0 51309000 23963000 27346000 0 0 0 24100 22 25157;25158 127201;127202;127203;127204;127205;127206;127207;127208;127209;127210;127211;127212 128164;128165;128166;128167;128168;128169;128170 128167 8;9 7 MEDQFAALHENPDIIIATPGR KFTGLKTALILGGDRMEDQFAALHENPDII ALHENPDIIIATPGRLVHVAVEMSLKLQSV R M E G R L 3 1 1 2 0 1 2 1 1 3 1 0 1 1 2 0 1 0 0 0 0 0 21 0 2337.1423 Q8TDD1;F8VRX4 Q8TDD1 206 226 DDX54 ATP-dependent RNA helicase DDX54 yes no 3 7.5974E-13 83.776 By MS/MS By MS/MS 1 1 0.67953 0.71175 8.5884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7122 0.75632 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64836 0.66981 NaN 1 0 Median NaN NaN NaN 0 0 Median 17220000 9389100 7830800 0 0 0 0 0 0 10291000 5432800 4858000 0 0 0 6929200 3956400 2972900 0 0 0 24101 3470 25159 127213;127214 128171;128172;128173;128174 128172 4 MEDSASASLSSAAATGTSTSTPAAPTAR ______________________________ ATGTSTSTPAAPTARKQLDKEQVRKAVDAL - M E A R K 8 1 0 1 0 0 1 1 0 0 1 0 1 0 2 7 5 0 0 0 0 0 28 0 2596.1923 O76021;J3QSV6;I3L3U9;J3KPU7;I3L2F2;I3L4T8;I3L1Y4 O76021 1 28 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 4.9075E-29 81.888 By MS/MS By MS/MS 1 8 0.77779 0.79705 15.206 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77132 0.79705 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79648 0.81442 16.058 8 1 Median NaN NaN NaN 0 0 Median 64496000 34261000 30235000 0 0 0 0 0 0 4642400 2187000 2455400 0 0 0 59854000 32074000 27780000 0 0 0 24102 1716 25160;25161 127215;127216;127217;127218;127219;127220;127221;127222;127223 128175;128176;128177;128178;128179;128180;128181;128182;128183 128177 564 9 MEDSVGCLETAEEVKR QIATLHAQVADMKKKMEDSVGCLETAEEVK EDSVGCLETAEEVKRKLQKDLEGLSQRHEE K M E K R K 1 1 0 1 1 0 4 1 0 0 1 1 1 0 0 1 1 0 0 2 0 0 16 1 1851.8343 P35579 P35579 1373 1388 MYH9 Myosin-9 yes yes 3 3.1878E-10 98.694 By MS/MS 1 1.042 0.98002 NaN 1 Median NaN NaN NaN 0 0 Median 1.042 0.98002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8723400 4061900 4661500 0 0 0 8723400 4061900 4661500 0 0 0 0 0 0 0 0 0 0 0 0 24103 2244 25162 127224 128184 128184 1 MEDTSFPSGGNAIGVNSASSK LAAAIAGAKLRKVSRMEDTSFPSGGNAIGV PSGGNAIGVNSASSKTDTGRGNGPLPLGGS R M E S K T 2 0 2 1 0 0 1 3 0 1 0 1 1 1 1 5 1 0 0 1 0 0 21 0 2054.9215 A0A0U1RRM6;Q8N8S7 A0A0U1RRM6 639 659 ENAH Protein enabled homolog yes no 2 1.3104E-11 73.91 By MS/MS By MS/MS 1 1 0.93698 0.93272 6.4814 2 Median 0.93776 0.89094 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93621 0.97647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10332000 5212300 5119900 4260700 2022400 2238400 0 0 0 6071500 3189900 2881600 0 0 0 0 0 0 0 0 0 24104 313 25163 127225;127226 128185;128186;128187;128188 128187 4 MEDYLQLPDDYDTR TGTKRKRDWEAIASRMEDYLQLPDDYDTRA RMEDYLQLPDDYDTRASEPGKKRVRWADLE R M E T R A 0 1 0 4 0 1 1 0 0 0 2 0 1 0 1 0 1 0 2 0 0 0 14 0 1772.7563 P49750;F8VU51 P49750 2077 2090 YLPM1 YLP motif-containing protein 1 yes no 2 0.0013066 49.35 By MS/MS By matching 1 1 0.75972 0.81541 10.336 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79027 0.87723 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73036 0.75794 NaN 1 0 Median NaN NaN NaN 0 0 Median 2662700 1609900 1052800 0 0 0 0 0 0 1690100 1129300 560770 0 0 0 972610 480610 492000 0 0 0 24105 2395 25164 127227;127228 128189 128189 1 MEEANIQPNR LQNEYKFSPTDFLAKMEEANIQPNRVTYQR DFLAKMEEANIQPNRVTYQRLIASYCNVGD K M E N R V 1 1 2 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 10 0 1200.5557 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 188 197 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 3.97E-05 139.88 By MS/MS By MS/MS By MS/MS 1 2 1 1.1133 0.94694 29.751 4 Median 0.86024 0.84088 NaN 1 0 Median 1.1133 0.94694 2.2571 2 0 Median NaN NaN NaN 0 0 Median 1.9118 1.6318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27417000 12007000 15410000 2770200 1626700 1143400 23688000 10150000 13539000 0 0 0 958590 230300 728290 0 0 0 0 0 0 24106 2315 25165;25166 127229;127230;127231;127232 128190;128191;128192;128193;128194;128195;128196 128193 1055 7 MEEASEGGGNDRVR ______________________________ ______________________________ - M E V R N 1 2 1 1 0 0 3 3 0 0 0 0 1 0 0 1 0 0 0 1 0 0 14 1 1505.6529 Q9BV40;B8ZZT4 Q9BV40 1 14 VAMP8 Vesicle-associated membrane protein 8 yes no 2 0.00038593 97.456 By MS/MS 1 1.7211 1.4674 NaN 1 Median NaN NaN NaN 0 0 Median 1.7211 1.4674 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3026300 1032300 1994000 0 0 0 3026300 1032300 1994000 0 0 0 0 0 0 0 0 0 0 0 0 24107 3845 25167 127233 128197 128197 1 MEEDQELER ______________________________ ______________________________ - M E E R K 0 1 0 1 0 1 4 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1177.4921 P0DPB6;Q7Z776;A0A087X0U2;A0A1B0GUZ5;P0DPB5 P0DPB6 1 9 POLR1D yes no 2 0.0015914 80.239 By MS/MS 1 0.88375 0.89601 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88375 0.89601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7848100 4321700 3526400 0 0 0 0 0 0 7848100 4321700 3526400 0 0 0 0 0 0 0 0 0 24108 1932 25168 127234 128198;128199 128199 2 MEEDQELERK ______________________________ ______________________________ - M E R K I 0 1 0 1 0 1 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 10 1 1305.5871 P0DPB6;Q7Z776;A0A087X0U2;A0A1B0GUZ5;P0DPB5 P0DPB6 1 10 POLR1D yes no 2 0.00026785 76.465 By MS/MS 1 0.85073 0.88622 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85073 0.88622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968400 2157600 1810700 0 0 0 0 0 0 3968400 2157600 1810700 0 0 0 0 0 0 0 0 0 24109 1932 25169 127235 128200 128200 1 MEEEILLLEDQNSK KLQLEKVTAEAKIKKMEEEILLLEDQNSKF KMEEEILLLEDQNSKFIKEKKLMEDRIAEC K M E S K F 0 0 1 1 0 1 4 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 14 0 1689.8131 P35580 P35580 983 996 MYH10 Myosin-10 yes yes 2 7.072E-06 124.42 By MS/MS By matching By matching 1 1 1 0.48475 0.50646 41.36 3 Median 1.0608 1.0257 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44546 0.49599 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48475 0.50646 NaN 1 0 Median NaN NaN NaN 0 0 Median 18422000 10404000 8018400 11668000 5666700 6000800 0 0 0 5756100 4163500 1592500 0 0 0 998760 573750 425010 0 0 0 24110 2245 25170 127236;127237;127238 128201 128201 1 MEEESGAPGVPSGNGAPGPK AGVEAAAEVAATEIKMEEESGAPGVPSGNG GAPGVPSGNGAPGPKGEGERPAQNEKRKEK K M E P K G 2 0 1 0 0 0 3 5 0 0 0 1 1 0 4 2 0 0 0 1 0 0 20 0 1866.8418 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 18 37 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 4.4604E-21 112.44 By MS/MS By MS/MS By MS/MS 1 1 1 0.45107 0.47683 24.472 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45107 0.47683 NaN 1 0 Median 0.72888 0.63235 NaN 1 0 Median 0.37717 0.3884 NaN 1 1 Median NaN NaN NaN 0 0 Median 12941000 9175900 3765400 0 0 0 0 0 0 4888500 3261900 1626600 2019400 1231500 787920 6033400 4682500 1350800 0 0 0 24111 116 25171 127239;127240;127241 128202;128203;128204 128203 3 MEEETEVR KEQEEEEQKQEMEVKMEEETEVRESEKQQD KQEMEVKMEEETEVRESEKQQDSQPEEVMD K M E V R E 0 1 0 0 0 0 4 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 8 0 1021.4386 Q9H307 Q9H307 366 373 PNN Pinin yes yes 2 0.0035928 86.794 By MS/MS By MS/MS 3 2 1.1203 1.1104 8.6922 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0892 1.1104 6.7882 3 0 Median 1.381 1.1683 12.916 2 0 Median 14575000 7003100 7571600 0 0 0 0 0 0 0 0 0 0 0 0 13485000 6518400 6966400 1090000 484740 605210 24112 3950 25172 127242;127243;127244;127245;127246 128205;128206;128207;128208;128209;128210 128206 6 MEEETEVRESEK KEQEEEEQKQEMEVKMEEETEVRESEKQQD EVKMEEETEVRESEKQQDSQPEEVMDVLEM K M E E K Q 0 1 0 0 0 0 6 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 12 1 1494.6508 Q9H307 Q9H307 366 377 PNN Pinin yes yes 3 0.0038975 36.284 By MS/MS By MS/MS 3 1 0.91524 1.0213 28.437 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90699 0.99733 30.919 3 0 Median 1.2726 1.1106 NaN 1 0 Median 7855300 4215300 3640100 0 0 0 0 0 0 0 0 0 0 0 0 6459500 3610600 2848900 1395800 604610 791190 24113 3950 25173 127247;127248;127249;127250 128211;128212;128213;128214 128212 4 MEEFKDQLPADECNK AVNMAEGIIHDTETKMEEFKDQLPADECNK MEEFKDQLPADECNKLKEEISKMRELLARK K M E N K L 1 0 1 2 1 1 3 0 0 0 1 2 1 1 1 0 0 0 0 0 0 0 15 1 1852.7971 P38646 P38646 596 610 HSPA9 Stress-70 protein, mitochondrial yes yes 3 2.7532E-05 81.448 By MS/MS 1 1.0293 0.95937 NaN 1 Median NaN NaN NaN 0 0 Median 1.0293 0.95937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19009000 9119100 9890200 0 0 0 19009000 9119100 9890200 0 0 0 0 0 0 0 0 0 0 0 0 24114 2277 25174 127251 128215;128216 128216 2 MEEGEVYAIETFGSTGK AGKTVPIVKGGEATRMEEGEVYAIETFGST EGEVYAIETFGSTGKGVVHDDMECSHYMKN R M E G K G 1 0 0 0 0 0 4 3 0 1 0 1 1 1 0 1 2 0 1 1 0 0 17 0 1846.8295 P50579;F8VRR3;F8VQZ7 P50579 355 371 METAP2 Methionine aminopeptidase 2 yes no 2 2.1513E-05 65.395 By matching By MS/MS By matching 1 1 1 1.2558 1.2773 33.493 3 Plateau 1.142 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2558 1.2773 NaN 1 0 Median 0.77412 0.67431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5818900 2586000 3232900 1535600 672880 862680 0 0 0 3680700 1545400 2135300 602610 367760 234860 0 0 0 0 0 0 24115 2418 25175 127252;127253;127254 128217;128218 128218 2 MEEGGNLGGLIK ______________________________ ______________________________ - M E I K M 0 0 1 0 0 0 2 4 0 1 2 1 1 0 0 0 0 0 0 0 0 0 12 0 1216.6122 K7ELQ9;Q6UW68;K7ER05;K7EJQ9;K7EMV9 K7ELQ9 1 12 TMEM205 Transmembrane protein 205 yes no 2 0.034814 46.158 By MS/MS 1 1.4309 1.2471 NaN 1 Median NaN NaN NaN 0 0 Median 1.4309 1.2471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490000 1407800 2082200 0 0 0 3490000 1407800 2082200 0 0 0 0 0 0 0 0 0 0 0 0 24116 1379 25176 127255 128219 128219 1 MEEIEGFR SGENRGPILLPYQFRMEEIEGFRYRCRDAM LLPYQFRMEEIEGFRYRCRDAMRSVTKQAI R M E F R Y 0 1 0 0 0 0 3 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 8 0 1009.4539 Q9NY93;H7C3E9;H7BZN7 Q9NY93 420 427 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.0035542 89.142 By MS/MS By matching 1 1 1.5655 1.4588 15.567 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6217 1.6285 NaN 1 0 Median 1.5112 1.3067 NaN 1 0 Median 6281000 2622600 3658400 0 0 0 0 0 0 0 0 0 0 0 0 5714400 2420300 3294100 566620 202280 364340 24117 4173 25177 127256;127257 128220 128220 1 MEELHNQEMQK LLRQDLMRRQEELRRMEELHNQEMQKRKEM ELRRMEELHNQEMQKRKEMQLRQEEERRRR R M E Q K R 0 0 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 11 0 1415.6173 P23246;H0Y9K7 P23246 549 559 SFPQ Splicing factor, proline- and glutamine-rich yes no 2;3 5.6746E-05 111.61 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 2 1.2521 1.1115 4.9803 7 Median NaN NaN NaN 0 0 Median 1.2118 1.0645 4.8801 2 0 Median 1.0165 1.1115 NaN 1 0 Median 1.3584 1.1764 NaN 1 0 Median 1.0494 1.0851 NaN 1 0 Median 1.3824 1.1526 4.8892 2 0 Median 27484000 12596000 14888000 0 0 0 6654200 2824600 3829600 9105000 4670600 4434300 6449500 2714100 3735300 3889000 1873700 2015400 1386700 513130 873560 24118 2107 25178 127258;127259;127260;127261;127262;127263;127264;127265;127266;127267 128221;128222;128223;128224;128225;128226;128227;128228 128227 8 MEELHNQEVQK LMRQDLMRRQEELRRMEELHNQEVQKRKQL ELRRMEELHNQEVQKRKQLELRQEEERRRR R M E Q K R 0 0 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1383.6453 Q15233;H7C367;C9JYS8 Q15233 326 336 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.00018241 77.662 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 3 2 1.3912 1.1763 15.896 12 Median NaN NaN NaN 0 0 Median 1.2505 1.0756 21.181 2 0 Median 1.0084 0.99949 22.377 3 0 Median 1.413 1.236 1.9459 2 1 Median 1.0725 1.0213 22.126 3 0 Median 1.3949 1.1763 0.76718 2 0 Median 41895000 19279000 22616000 0 0 0 3831000 1655400 2175600 19152000 9227900 9924300 5281500 2224300 3057200 10970000 4994300 5976100 2659900 1176800 1483000 24119 2935 25179 127268;127269;127270;127271;127272;127273;127274;127275;127276;127277;127278;127279 128229;128230;128231;128232;128233;128234;128235;128236;128237;128238 128231 10 MEEQGLADASLLK NLTEDNSQNQDLIAKMEEQGLADASLLKKV AKMEEQGLADASLLKKVGFEVEKKGEKLIL K M E L K K 2 0 0 1 0 1 2 1 0 0 3 1 1 0 0 1 0 0 0 0 0 0 13 0 1403.6966 Q9UBB4;B1AHE3 Q9UBB4 439 451 ATXN10 Ataxin-10 yes no 2 0.052656 39.918 By MS/MS 1 0.99577 0.94344 NaN 1 Median 0.99577 0.94344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4271400 2339000 1932500 4271400 2339000 1932500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24120 4232 25180 127280 128239 128239 1 MEEQGLADASLLKK NLTEDNSQNQDLIAKMEEQGLADASLLKKV KMEEQGLADASLLKKVGFEVEKKGEKLILK K M E K K V 2 0 0 1 0 1 2 1 0 0 3 2 1 0 0 1 0 0 0 0 0 0 14 1 1531.7916 Q9UBB4;B1AHE3 Q9UBB4 439 452 ATXN10 Ataxin-10 yes no 3 0.0018065 35.891 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.2423 1.308 23.588 5 Median 0.82237 0.78905 NaN 1 0 Median 1.118 1.1061 NaN 1 0 Median 1.2423 1.308 NaN 1 0 Median 1.4856 1.4111 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4944 1.3319 NaN 1 0 Median 15747000 6814900 8931900 5598600 2621700 2976800 1708800 805070 903680 2901000 1178600 1722400 4416900 1736100 2680800 0 0 0 1121600 473380 648190 24121 4232 25181 127281;127282;127283;127284;127285 128240;128241 128240 1 MEESFSSK IKGAAGRPLELSDFRMEESFSSKYVPKYVP LELSDFRMEESFSSKYVPKYVPLADVKSEK R M E S K Y 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 3 0 0 0 0 0 0 8 0 943.3957 P42167;G5E972;H0YJH7 P42167 382 389 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.018269 48.036 By matching By matching By MS/MS By matching 1 1 1 3 1.3189 1.126 21.266 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90996 0.93599 NaN 1 0 Median 1.169 1.0261 NaN 1 0 Median 0.97295 0.92739 NaN 1 0 Median 1.5267 1.2426 15.161 3 0 Median 9700100 4632600 5067500 0 0 0 0 0 0 2769200 1405800 1363500 351420 154800 196620 4067000 2110100 1956900 2512500 961930 1550500 24122 2307 25182 127286;127287;127288;127289;127290;127291 128242 128242 1 MEETPTEYLQR LKIGFFNQQYAEQLRMEETPTEYLQRGFNL EQLRMEETPTEYLQRGFNLPYQDARKCLGR R M E Q R G 0 1 0 0 0 1 3 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 11 0 1395.634 Q8NE71;H0YGW7 Q8NE71 703 713 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.1952E-05 156.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 3 7 1 1.0696 0.98961 40.574 15 Median 1.1374 1.0952 NaN 1 0 Median 1.0066 0.89671 13.271 3 0 Median 1.084 1.1482 7.6309 3 0 Median 1.0696 0.92135 58.083 7 0 Median NaN NaN NaN 0 0 Median 1.2562 1.0326 NaN 1 0 Median 66573000 32400000 34173000 15917000 7709500 8208000 5314200 2661000 2653200 23926000 12145000 11781000 20787000 9593000 11194000 0 0 0 628750 291620 337130 24123 3427 25183;25184 127292;127293;127294;127295;127296;127297;127298;127299;127300;127301;127302;127303;127304;127305;127306 128243;128244;128245;128246;128247;128248;128249;128250;128251;128252;128253 128244 1723 11 MEEVKEANIR LCISTKKEVEKMNKKMEEVKEANIRVVSED KMNKKMEEVKEANIRVVSEDFLQDVSASTK K M E I R V 1 1 1 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 10 1 1217.6074 P09874 P09874 443 452 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00029553 87.308 By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 0.92668 1.045 24.791 9 Median 0.76147 0.78743 37.299 2 0 Median NaN NaN NaN 0 0 Median 0.92668 1.0501 3.0354 3 0 Median NaN NaN NaN 0 0 Median 0.8448 0.94814 25.838 2 0 Median 1.0245 0.89823 41.198 2 1 Median 28780000 14755000 14025000 2044200 1014500 1029700 0 0 0 21485000 11111000 10374000 0 0 0 3660200 1936500 1723700 1591300 693500 897830 24124 1922 25185 127307;127308;127309;127310;127311;127312;127313;127314;127315 128254;128255;128256;128257;128258;128259;128260 128257 7 MEEVVIAGMSGK ______________________________ ______________________________ - M E G K L 1 0 0 0 0 0 2 2 0 1 0 1 2 0 0 1 0 0 0 2 0 0 12 0 1249.6046 P49327;A0A0U1RQF0;A0A0U1RRG3;A0A1B0GTR5 P49327 1 12 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00028301 83.397 By MS/MS By MS/MS By matching By matching 8 3 2 1 1.2058 1.1739 28.191 14 Median 1.0654 1.0236 17.139 8 0 Median 1.5007 1.3325 9.6739 3 0 Plateau 1.2736 1.4813 20.816 2 0 Median NaN NaN NaN 0 0 Median 2.3011 2.3663 NaN 1 0 Median NaN NaN NaN 0 0 Median 53487000 24369000 29118000 47345000 21991000 25354000 4697500 1855500 2841900 989870 410980 578900 0 0 0 454500 111200 343300 0 0 0 24125 2377 25186 127316;127317;127318;127319;127320;127321;127322;127323;127324;127325;127326;127327;127328;127329 128261;128262;128263;128264;128265 128264 5 MEEYSDLLK RAECRTSQLNKATVKMEEYSDLLKSTEAWI NKATVKMEEYSDLLKSTEAWIENTSHLLAN K M E L K S 0 0 0 1 0 0 2 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 9 0 1126.5216 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3787 3795 SYNE2 Nesprin-2 yes no 2 0.027975 50.805 By MS/MS 1 0.87096 0.93336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87096 0.93336 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7777000 4390900 3386100 0 0 0 0 0 0 7777000 4390900 3386100 0 0 0 0 0 0 0 0 0 24126 3521 25187 127330 128266 128266 1 MEFGTAGLR AEGNKEELRKCFGARMEFGTAGLRAAMGPG KCFGARMEFGTAGLRAAMGPGISRMNDLTI R M E L R A 1 1 0 0 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 0 0 0 9 0 980.47495 Q96G03;E7ENQ8;E9PD70 Q96G03 55 63 PGM2 Phosphoglucomutase-2 yes no 2 0.00056821 94.302 By MS/MS 2 1.2454 1.1793 9.8195 2 Median 1.2454 1.1793 9.8195 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32118000 15017000 17101000 32118000 15017000 17101000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24127 3652 25188 127331;127332 128267;128268 128267 2 MEFVSEVQR MERYQHYRQTVRALRMEFVSEVQRKVHEAR TVRALRMEFVSEVQRKVHEARAGVLAERKA R M E Q R K 0 1 0 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 9 0 1123.5332 Q9BYN8 Q9BYN8 72 80 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 0.00173 89.355 By MS/MS 1 1.4942 1.2637 NaN 1 Median NaN NaN NaN 0 0 Median 1.4942 1.2637 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8534600 3449100 5085500 0 0 0 8534600 3449100 5085500 0 0 0 0 0 0 0 0 0 0 0 0 24128 3894 25189 127333 128269 128269 1 MEGAGAGSGFRK ______________________________ ______________________________ - M E R K E 2 1 0 0 0 0 1 4 0 0 0 1 1 1 0 1 0 0 0 0 0 0 12 1 1166.5502 A8MT69;J3QRS1 A8MT69 1 12 STRA13 Centromere protein X yes no 2 0.00041496 63.624 By MS/MS 1 1.5736 1.5439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5736 1.5439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3437500 1409600 2028000 0 0 0 0 0 0 0 0 0 3437500 1409600 2028000 0 0 0 0 0 0 24129 542 25190 127334 128270 128270 1 MEGDLKAPEVDIK KGPKVKGDVDVSLPKMEGDLKAPEVDIKGP PKMEGDLKAPEVDIKGPKVDIDAPDVDVHG K M E I K G 1 0 0 2 0 0 2 1 0 1 1 2 1 0 1 0 0 0 0 1 0 0 13 1 1443.7279 Q09666 Q09666 4026 4038 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0072773 30.483 By MS/MS By MS/MS 1 1 1.0041 1.0777 6.9333 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90501 1.0261 NaN 1 0 Median 1.1141 1.1318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13354000 6557500 6796700 0 0 0 0 0 0 10475000 5131400 5343900 2878800 1426100 1452700 0 0 0 0 0 0 24130 2749 25191 127335;127336 128271;128272 128271 2 MEGDLKAPEVDIKGPK KGPKVKGDVDVSLPKMEGDLKAPEVDIKGP EGDLKAPEVDIKGPKVDIDAPDVDVHGPDW K M E P K V 1 0 0 2 0 0 2 2 0 1 1 3 1 0 2 0 0 0 0 1 0 0 16 2 1725.8971 Q09666 Q09666 4026 4041 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.7647E-05 50.608 By MS/MS By MS/MS 2 2 0.65176 0.7893 49.949 4 Median 0.62091 0.73343 14.635 2 0 Median NaN NaN NaN 0 0 Median 0.99437 1.2346 67.517 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68063000 30960000 37103000 24255000 13657000 10598000 0 0 0 43808000 17304000 26505000 0 0 0 0 0 0 0 0 0 24131 2749 25192 127337;127338;127339;127340 128273;128274;128275;128276;128277;128278;128279 128278 7 MEGDLKGPEVDIK KGPKVKGDVDVSLPKMEGDLKGPEVDIKGP PKMEGDLKGPEVDIKGPKVDINAPDVDVQG K M E I K G 0 0 0 2 0 0 2 2 0 1 1 2 1 0 1 0 0 0 0 1 0 0 13 1 1429.7123 Q09666 Q09666 3770 3782 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00058132 63.283 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 0.92313 0.97133 17.962 6 Median 0.89513 0.97549 NaN 1 0 Median 1.132 1.0791 NaN 1 0 Median 0.67575 0.76632 NaN 1 0 Median 0.952 0.96718 20.243 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32972000 16072000 16900000 6568700 3056600 3512000 6428500 2905300 3523200 9540100 5174300 4365700 10435000 4935700 5499400 0 0 0 0 0 0 24132 2749 25193 127341;127342;127343;127344;127345;127346 128280;128281;128282;128283;128284;128285;128286;128287;128288;128289 128284 10 MEGDLKGPEVDIKGPK KGPKVKGDVDVSLPKMEGDLKGPEVDIKGP EGDLKGPEVDIKGPKVDINAPDVDVQGPDW K M E P K V 0 0 0 2 0 0 2 3 0 1 1 3 1 0 2 0 0 0 0 1 0 0 16 2 1711.8815 Q09666 Q09666 3770 3785 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.5244E-05 59.862 By MS/MS By MS/MS 2 2 0.70679 0.83658 12.546 4 Median 0.70679 0.83487 0.53328 2 0 Median NaN NaN NaN 0 0 Median 0.76245 0.94663 17.723 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60651000 34095000 26555000 31023000 17304000 13719000 0 0 0 29627000 16791000 12837000 0 0 0 0 0 0 0 0 0 24133 2749 25194 127347;127348;127349;127350 128290;128291;128292;128293;128294;128295 128293 6 MEGGFGSDFGGSGSGK ______________________________ EGGFGSDFGGSGSGKLDPGLIMEQVKVQIA - M E G K L 0 0 0 1 0 0 1 7 0 0 0 1 1 2 0 3 0 0 0 0 0 0 16 0 1475.5987 Q9Y5L4;K7EIT2 Q9Y5L4 1 16 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes no 2 5.0322E-10 102.66 By MS/MS By matching By MS/MS By MS/MS 1 1 3 2 1.0567 0.99749 14.823 7 Median 1.0567 0.97938 NaN 1 0 Median 1.4496 1.2421 NaN 1 0 Median 1.0216 0.98035 2.9438 3 0 Median 1.601 1.3018 0.34007 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22153000 10750000 11403000 2146900 1131100 1015800 296520 118890 177630 16580000 8245700 8334500 3129200 1254400 1874800 0 0 0 0 0 0 24134 4462 25195;25196 127351;127352;127353;127354;127355;127356;127357 128296;128297;128298;128299;128300;128301;128302 128300 1992 7 MEGGGAEVHAQLPSLEGDLR FPKFSMPKIGIPGVKMEGGGAEVHAQLPSL AEVHAQLPSLEGDLRGPDVKLEGPDVSLKG K M E L R G 2 1 0 1 0 1 3 4 1 0 3 0 1 0 1 1 0 0 0 1 0 0 20 0 2064.9899 Q09666 Q09666 5248 5267 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.05718 8.1875 By matching By MS/MS 1 3 1.0746 0.93542 14.698 4 Median NaN NaN NaN 0 0 Median 1.0877 0.96486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0616 0.90688 17.974 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1834000 735250 1098700 0 0 0 331270 155920 175350 0 0 0 1502700 579330 923390 0 0 0 0 0 0 24135 2749 25197 127358;127359;127360;127361 128303 128303 1 MEGGTENDLR KADAIVKMLDAAVIKMEGGTENDLRILEQE AAVIKMEGGTENDLRILEQEEEEEQAGKPG K M E L R I 0 1 1 1 0 0 2 2 0 0 1 0 1 0 0 0 1 0 0 0 0 0 10 0 1120.4819 Q9BXP5 Q9BXP5 257 266 SRRT Serrate RNA effector molecule homolog yes yes 2 0.00022687 128.36 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 4 2 2 1 1.0407 0.97208 9.4377 14 Median 1.0105 0.99935 6.4655 2 0 Median 1.0929 0.92985 3.932 3 0 Median 0.93523 0.98993 9.6627 4 0 Median 1.0712 0.92854 15.108 2 0 Median 1.0687 1.1124 10.93 2 0 Median 1.161 0.95795 NaN 1 0 Median 22937000 11026000 11911000 2546500 1239200 1307300 10101000 4834400 5266700 4491300 2263300 2227900 1528800 793730 735040 3861700 1685200 2176500 408000 210130 197870 24136 3879 25198;25199 127362;127363;127364;127365;127366;127367;127368;127369;127370;127371;127372;127373;127374;127375 128304;128305;128306;128307;128308;128309;128310 128309 1844 7 MEGHYVHAGNIIATQR NLGGKSSGRRQGIKKMEGHYVHAGNIIATQ EGHYVHAGNIIATQRHFRWHPGAHVCVLQV K M E Q R H 2 1 1 0 0 1 1 2 2 2 0 0 1 0 0 0 1 0 1 1 0 0 16 0 1795.8788 H7C5U8;Q9P0M9;D6RAN8;D6RE11;B3KN43 H7C5U8 39 54 MRPL27 39S ribosomal protein L27, mitochondrial yes no 3;4 1.1437E-08 131.51 By MS/MS By MS/MS By MS/MS 1 3 2 1.2244 1.4394 11.474 6 Linear 1.2323 1.2246 NaN 1 1 Median 1.5597 1.3287 13.227 3 1 Plateau 1.0931 1.1081 14.64 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39122000 15786000 23336000 4331300 1764900 2566400 30899000 12504000 18395000 3892200 1517700 2374500 0 0 0 0 0 0 0 0 0 24137 1267 25200;25201 127376;127377;127378;127379;127380;127381 128311;128312;128313;128314;128315;128316;128317;128318;128319 128316 422 9 MEGPLSVFGDR ______________________________ ______________________________ - M E D R S 0 1 0 1 0 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 11 0 1206.5703 P17987;E7ERF2;F5GZ03;F5GZI8;F5GYL4 P17987 1 11 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00018518 111.06 By MS/MS By matching By MS/MS By matching 4 3 1 1 1.049 0.98156 6.4159 9 Median 1.0275 1.0098 3.4643 4 0 Median 1.0633 0.94796 2.3739 3 0 Median 1.0853 1.138 NaN 1 0 Median 1.1797 1.0427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22390000 10880000 11510000 16624000 8002600 8621400 2825100 1414000 1411100 2852900 1425900 1427000 88001 37143 50858 0 0 0 0 0 0 24138 2051 25202 127382;127383;127384;127385;127386;127387;127388;127389;127390 128320;128321;128322;128323;128324;128325;128326 128325 7 MEGQSVEELLAK ______________________________ ______________________________ - M E A K A 1 0 0 0 0 1 3 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 0 1332.6595 Q15050 Q15050 1 12 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00081004 53.327 By MS/MS By matching 4 1 1.3083 1.1747 53.98 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0714 1.0209 65.937 3 0 Median 1.5976 1.3518 NaN 1 0 Median 8182500 3848300 4334200 0 0 0 0 0 0 0 0 0 0 0 0 7980600 3779700 4201000 201900 68662 133240 24139 2920 25203 127391;127392;127393;127394;127395 128327;128328 128327 1603 2 MEGVSALLAR ______________________________ ______________________________ - M E A R C 2 1 0 0 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1045.559 Q5SNT2 Q5SNT2 1 10 TMEM201 Transmembrane protein 201 yes yes 2 0.002056 56.258 By matching By MS/MS By matching 1 1 1 1.1258 1.1466 6.5242 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1258 1.1254 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1175 1.1466 NaN 1 0 Median 1.6338 1.2704 NaN 1 0 Median 9284200 4222200 5062100 0 0 0 0 0 0 930280 471100 459180 0 0 0 8134900 3662200 4472700 219080 88868 130220 24140 3073 25204 127396;127397;127398 128329 128329 1661 1 MEHFDASLSTYFK ______________________________ ______________________________ - M E F K A 1 0 0 1 0 0 1 0 1 0 1 1 1 2 0 2 1 0 1 0 0 0 13 0 1574.7075 A0A0A0MTI6;Q9NYP7 A0A0A0MTI6 1 13 ELOVL5 Elongation of very long chain fatty acids protein;Elongation of very long chain fatty acids protein 5 yes no 2 0.0009825 61.65 By matching By MS/MS 1 2 1.4654 1.2778 8.3781 3 Median 1.4877 1.4381 NaN 1 0 Median 1.4366 1.2501 3.0916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3957200 1382400 2574800 424020 186850 237170 3533200 1195600 2337600 0 0 0 0 0 0 0 0 0 0 0 0 24141 194 25205 127399;127400;127401 128330 128330 1 MEIATKDPLNPIK VFHMVVEVPRWSNAKMEIATKDPLNPIKQD AKMEIATKDPLNPIKQDVKKGKLRYVANLF K M E I K Q 1 0 1 1 0 0 1 0 0 2 1 2 1 0 2 0 1 0 0 0 0 0 13 1 1468.796 Q15181;Q5SQT6 Q15181 58 70 PPA1 Inorganic pyrophosphatase yes no 2 0.00064944 138.71 By MS/MS By matching 1 1 0.77518 0.72499 5.255 2 Median 0.77502 0.75244 NaN 1 0 Median 0.77534 0.69855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18550000 9351800 9198300 15486000 7637300 7848400 3064400 1714500 1349900 0 0 0 0 0 0 0 0 0 0 0 0 24142 2934 25206 127402;127403 128331;128332 128332 2 MEIATKDPLNPIKQDVK VFHMVVEVPRWSNAKMEIATKDPLNPIKQD IATKDPLNPIKQDVKKGKLRYVANLFPYKG K M E V K K 1 0 1 2 0 1 1 0 0 2 1 3 1 0 2 0 1 0 0 1 0 0 17 2 1939.0448 Q15181;Q5SQT6 Q15181 58 74 PPA1 Inorganic pyrophosphatase yes no 3 0.00015958 42.277 By MS/MS By matching 1 1 0.80641 0.82142 13.012 2 Median 0.71723 0.74921 NaN 1 0 Median 0.90669 0.90058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12716000 7362900 5353100 10423000 6063700 4359000 2293300 1299200 994130 0 0 0 0 0 0 0 0 0 0 0 0 24143 2934 25207 127404;127405 128333;128334 128334 2 MEIATKEPMNPIK LFNMIVEIPRWTNAKMEIATKEPMNPIKQY AKMEIATKEPMNPIKQYVKDGKLRYVANIF K M E I K Q 1 0 1 0 0 0 2 0 0 2 0 2 2 0 2 0 1 0 0 0 0 0 13 1 1500.768 Q9H2U2;D6RGV9;H0YAK2;D6RGI1 Q9H2U2 106 118 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes no 2;3 0.00021441 127.42 By MS/MS By matching 3 1 0.80933 0.80812 16.045 3 Plateau 0.83121 0.80812 18.883 2 0 Median 0.80933 0.6927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24172000 12500000 11672000 23059000 11977000 11082000 1113000 522400 590630 0 0 0 0 0 0 0 0 0 0 0 0 24144 3947 25208 127406;127407;127408;127409 128335;128336;128337 128336 3 MEIQEAIK LAFERKLDQTIARKRMEIQEAIKKPLTQKR QTIARKRMEIQEAIKKPLTQKRKLRIYISN R M E I K K 1 0 0 0 0 1 2 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 8 0 960.49502 J3KMX2;B9EGA3;Q92925 J3KMX2 103 110 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.0059586 73.26 By matching By MS/MS 1 1 1.0653 0.97566 11.781 2 Median NaN NaN NaN 0 0 Median 1.2337 1.0604 NaN 1 0 Median 0.91987 0.89767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10790000 5305100 5484500 0 0 0 811830 409020 402800 9977800 4896100 5081700 0 0 0 0 0 0 0 0 0 24145 655 25209 127410;127411 128338 128338 1 MEIVDHALHALTDEVIIPHSGWER ITGTLWNLSSHDSIKMEIVDHALHALTDEV ALTDEVIIPHSGWEREPNEDCKPRHIEWES K M E E R E 2 1 0 2 0 0 3 1 3 3 2 0 1 0 1 1 1 1 0 2 0 0 24 0 2767.3752 C9JZR2;O60716 C9JZR2 487 510 CTNND1 Catenin delta-1 yes no 4 4.9276E-05 32.702 By MS/MS 2 1.1732 1.027 29.363 2 Median NaN NaN NaN 0 0 Median 1.1732 1.027 29.363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5485900 2573300 2912600 0 0 0 5485900 2573300 2912600 0 0 0 0 0 0 0 0 0 0 0 0 24146 732 25210 127412;127413 128339 128339 1 MEIVELEDHPFFVGVQYHPEFLSR EQGLKFVGQDVEGERMEIVELEDHPFFVGV PFFVGVQYHPEFLSRPIKPSPPYFGLLLAS R M E S R P 0 1 0 1 0 1 4 1 2 1 2 0 1 3 2 1 0 0 1 3 0 0 24 0 2917.4109 P17812;A0A3B3IRI2;B4E1E0 P17812 509 532 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.029488 12.433 By MS/MS 1 0.83567 0.72547 NaN 1 Median NaN NaN NaN 0 0 Median 0.83567 0.72547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3291200 1743700 1547600 0 0 0 3291200 1743700 1547600 0 0 0 0 0 0 0 0 0 0 0 0 24147 2046 25211 127414 128340 128340 1 MEKEETTR ______________________________ ______________________________ - M E T R E 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 0 2 0 0 0 0 0 8 1 1022.4703 Q09666;E9PQE3;E9PJZ0;E9PKR9;E9PJC6;E9PLK4 Q09666 1 8 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.012902 41.029 By MS/MS 1 1.2587 1.4521 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2587 1.4521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 929350 418560 510790 0 0 0 0 0 0 929350 418560 510790 0 0 0 0 0 0 0 0 0 24148 2749 25212 127415 128341 128341 1 MEKGEHSIVYLKPSYAFGSVGK ENLDLPYGLERAIQRMEKGEHSIVYLKPSY IVYLKPSYAFGSVGKEKFQIPPNAELKYEL R M E G K E 1 0 0 0 0 0 2 3 1 1 1 3 1 1 1 3 0 0 2 2 0 0 22 2 2426.2304 Q02790 Q02790 211 232 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 4 2.6643E-09 53.779 By MS/MS By matching 1 1 1.4726 1.5787 61.831 2 Median 1.0482 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0688 2.4444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26962000 12549000 14413000 23731000 11019000 12711000 0 0 0 3231100 1529100 1702000 0 0 0 0 0 0 0 0 0 24149 2701 25213 127416;127417 128342;128343 128342 2 MEKPPAPPSLPAGPPGVK WNRETKQFFLQFHFKMEKPPAPPSLPAGPP PPAPPSLPAGPPGVKRPPPPLMNGLPPRPP K M E V K R 2 0 0 0 0 0 1 2 0 0 1 2 1 0 7 1 0 0 0 1 0 0 18 1 1768.9546 Q15428 Q15428 214 231 SF3A2 Splicing factor 3A subunit 2 yes yes 3 3.3016E-06 54.288 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 0.35416 0.34008 8.0649 5 Median NaN NaN NaN 0 0 Median 0.35416 0.33228 NaN 1 0 Median 0.3122 0.32526 NaN 1 0 Median 0.38248 0.36745 10.947 2 0 Median 0.33962 0.36251 NaN 1 0 Median NaN NaN NaN 0 0 Median 37789000 27554000 10235000 0 0 0 1919500 1368900 550600 20949000 15251000 5697600 3812100 2610400 1201800 11109000 8323700 2785000 0 0 0 24150 2953 25214 127418;127419;127420;127421;127422 128344;128345;128346;128347 128346 4 MEKTELIQK ______________________________ ______________________________ - M E Q K A 0 0 0 0 0 1 2 0 0 1 1 2 1 0 0 0 1 0 0 0 0 0 9 1 1118.6005 P27348;E9PG15 P27348 1 9 YWHAQ 14-3-3 protein theta yes no 2 0.00035121 100.25 By matching By MS/MS 1 1 1.0427 1.0039 4.8734 2 Median 1.0233 1.0391 NaN 1 0 Median 1.0625 0.96986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33585000 15409000 18176000 23891000 11288000 12603000 9694400 4120900 5573500 0 0 0 0 0 0 0 0 0 0 0 0 24151 2152 25215 127423;127424 128348 128348 1 MELAGSNTTASSPAR VAAHASLNPALFSMKMELAGSNTTASSPAR MELAGSNTTASSPARARGRPRKTKPGSMQP K M E A R A 3 1 1 0 0 0 1 1 0 0 1 0 1 0 1 3 2 0 0 0 0 0 15 0 1491.6988 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1143 1157 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 3.7817E-09 131.37 By matching By MS/MS By MS/MS 1 1 2 0.78791 0.77134 8.7925 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74282 0.82472 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75356 0.78703 NaN 1 0 Median 0.86496 0.71252 8.3704 2 0 Median 9932600 5299200 4633400 0 0 0 0 0 0 1618900 802020 816900 0 0 0 5276700 2779600 2497100 3037000 1717600 1319400 24152 1065 25216 127425;127426;127427;127428 128349;128350;128351 128351 3 MELEAMSR ______________________________ ______________________________ - M E S R Y 1 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 8 0 965.43104 F5GWH5;P61165 F5GWH5 1 8 TMEM258 Transmembrane protein 258 yes no 2 0.0043885 82.452 By MS/MS By MS/MS By MS/MS By MS/MS 4 7 4 3 1.2285 1.0846 8.6251 18 Median 1.2027 1.1999 4.926 4 0 Median 1.2782 1.075 5.8124 7 0 Median 1.1038 1.1102 12.178 4 0 Median 1.4269 1.0357 2.879 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51913000 23175000 28738000 21724000 9718900 12005000 11822000 5056600 6765200 14570000 6892000 7677800 3798000 1507400 2290600 0 0 0 0 0 0 24153 998 25217;25218;25219 127429;127430;127431;127432;127433;127434;127435;127436;127437;127438;127439;127440;127441;127442;127443;127444;127445;127446 128352;128353;128354;128355;128356;128357;128358;128359;128360;128361;128362;128363 128360 349 11 MELEVAER TVETEREESKILLEKMELEVAERKLSFHNL SKILLEKMELEVAERKLSFHNLQEEMHHLL K M E E R K 1 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 8 0 975.46953 Q14789;E7EU81;H0Y867 Q14789 324 331 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0024981 107.9 By MS/MS By MS/MS 1 1 0.80016 0.71469 79.038 2 Median 1.2533 1.2498 NaN 1 0 Median 0.51087 0.40869 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30203000 19602000 10601000 6075300 2993400 3081900 24128000 16609000 7519200 0 0 0 0 0 0 0 0 0 0 0 0 24154 2900 25220 127447;127448 128364;128365 128364 2 MELFLAGR ______________________________ ______________________________ - M E G R R 1 1 0 0 0 0 1 1 0 0 2 0 1 1 0 0 0 0 0 0 0 0 8 0 935.48987 J3KS22;Q7Z4W1;J3KRZ4 J3KS22 1 8 DCXR L-xylulose reductase yes no 2 0.020031 47.067 By MS/MS 1 1.1234 1.0508 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1234 1.0508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1248100 572120 675980 0 0 0 0 0 0 1248100 572120 675980 0 0 0 0 0 0 0 0 0 24155 1330 25221 127449 128366 128366 1 MELITILEK ______________________________ ______________________________ - M E E K T 0 0 0 0 0 0 2 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1088.6151 Q14974;J3QR48 Q14974 1 9 KPNB1 Importin subunit beta-1 yes no 2 0.0058792 48.423 By MS/MS By MS/MS By matching By matching 4 6 4 1 1.1283 1.1546 12.374 15 Median 1.1132 1.0355 5.857 4 0 Median NaN NaN NaN 0 0 Median 1.1036 1.2012 13.438 6 0 Median NaN NaN NaN 0 0 Median 1.127 1.208 13.755 4 0 Median 1.3729 1.1711 NaN 1 0 Median 25287000 11932000 13355000 7524700 3444300 4080400 0 0 0 16546000 7925400 8620900 0 0 0 1023400 482250 541200 192490 80290 112200 24156 2904 25222 127450;127451;127452;127453;127454;127455;127456;127457;127458;127459;127460;127461;127462;127463;127464 128367;128368 128368 1590 2 MELLAHLLGEK AHVDGQTHMLFGSDRMELLAHLLGEKWMGP GSDRMELLAHLLGEKWMGPIPPAVNARL__ R M E E K W 1 0 0 0 0 0 2 1 1 0 4 1 1 0 0 0 0 0 0 0 0 0 11 0 1252.6849 Q9Y2Q3 Q9Y2Q3 203 213 GSTK1 Glutathione S-transferase kappa 1 yes yes 3 0.045047 16.942 By MS/MS By matching By matching 1 1 1 1.1645 0.99529 41.658 3 Median 0.79261 0.74347 NaN 1 0 Median 1.1645 0.99529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0102 1.691 NaN 1 0 Median 6364900 2810900 3554000 3364100 1736200 1627800 851620 391600 460020 0 0 0 0 0 0 0 0 0 2149200 683020 1466100 24157 4386 25223 127465;127466;127467 128369 128369 1 MELQEIQLK GMKVIENRALKDEEKMELQEIQLKEAKHIA LKDEEKMELQEIQLKEAKHIAEEADRKYEE K M E L K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1130.6005 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 A0A087WWU8 105 113 TPM3 Tropomyosin alpha-3 chain no no 2 0.0011181 85.064 By MS/MS By MS/MS By MS/MS 1 2 3 1.0038 0.93514 10.696 6 Median 1.1086 1.0041 NaN 1 0 Median 1.2427 1.0468 1.1777 2 0 Median 0.8967 0.86106 2.6361 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103510000 46732000 56779000 59065000 25692000 33372000 24986000 11121000 13865000 19461000 9919000 9541500 0 0 0 0 0 0 0 0 0 24158 63;1303 25224 127468;127469;127470;127471;127472;127473 128370;128371;128372;128373;128374;128375;128376;128377 128376 8 MELSAEYLR ______________________________ ______________________________ - M E L R E 1 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 9 0 1110.5379 Q9H3K6;H3BV85;H3BPT9 Q9H3K6 1 9 BOLA2;BOLA2B BolA-like protein 2 yes no 2 0.00091117 79.906 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 1 2 1 1.1733 0.99864 25.181 10 Median 1.1864 1.1509 1.2981 2 0 Median 1.2329 1.0142 12.115 4 0 Linear 1.1711 1.1872 NaN 1 0 Median 1.1625 0.91943 7.1177 2 0 Median 1.823 1.9481 NaN 1 0 Median NaN NaN NaN 0 0 Median 59074000 26884000 32190000 42871000 19685000 23186000 9869300 4462800 5406500 4079600 1753000 2326600 1790500 817650 972870 463620 165060 298560 0 0 0 24159 3955 25225;25226 127474;127475;127476;127477;127478;127479;127480;127481;127482;127483 128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388 128378 1858 11 MELSAVGER ______________________________ ______________________________ - M E E R V 1 1 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 9 0 990.48043 Q9HC52;B0QXZ6;O95503 Q9HC52 1 9 CBX8;CBX6 Chromobox protein homolog 8;Chromobox protein homolog 6 yes no 2 0.0050285 59.245 By MS/MS By MS/MS By matching 1 1 1 1.579 1.5174 21.207 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0771 1.0809 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.579 1.5967 NaN 1 1 Median 1.7159 1.5174 NaN 1 0 Median 5883000 2671700 3211300 0 0 0 0 0 0 4570000 2201700 2368300 0 0 0 1203800 433030 770810 109220 36987 72231 24160 4026 25227 127484;127485;127486 128389;128390;128391 128390 3 MELSDANLQTLTEYLKK ______________________________ LSDANLQTLTEYLKKTLDPDPAIRRPAEKF - M E K K T 1 0 1 1 0 1 2 0 0 0 4 2 1 0 0 1 2 0 1 0 0 0 17 1 1996.0187 P55060 P55060 1 17 CSE1L Exportin-2 yes yes 2 7.6212E-08 96.103 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0966 1.2088 11.69 5 Median 1.0252 1.0704 8.0248 2 0 Median 1.2491 1.2088 NaN 1 0 Median 1.0966 1.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5063 1.3847 NaN 1 0 Median 16414000 7589300 8824900 11552000 5358300 6193500 4089800 1890500 2199300 712900 320430 392470 0 0 0 0 0 0 59574 20028 39546 24161 2493 25228 127487;127488;127489;127490;127491 128392;128393;128394 128394 3 MELVQVLK ______________________________ ______________________________ - M E L K R 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 8 0 958.55214 Q9UI09;F8VRD8;F8VXI1 Q9UI09 1 8 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 2 0.016903 49.358 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1.0329 0.89768 28.387 6 Median 0.95056 0.89768 0.7339 2 0 Median 1.8402 1.6116 NaN 1 0 Median 0.84729 0.76377 NaN 1 0 Median 1.1177 0.88591 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5805 1.2964 NaN 1 0 Median 5779500 2874100 2905400 4955000 2560200 2394800 492030 174600 317430 119670 52678 66994 45722 16379 29343 0 0 0 167080 70316 96763 24162 4286 25229 127492;127493;127494;127495;127496;127497 128395 128395 1 MELVQVLKR ______________________________ ______________________________ - M E K R G 0 1 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 9 1 1114.6532 Q9UI09;F8VRD8;F8VXI1 Q9UI09 1 9 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 2 0.00016202 98.299 By MS/MS By MS/MS 2 1 1.0629 0.96753 6.729 3 Plateau 1.0135 1.0008 9.1067 2 1 Median NaN NaN NaN 0 0 Median 0.9283 0.96753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27642000 13091000 14551000 24148000 11485000 12663000 0 0 0 3493500 1605800 1887700 0 0 0 0 0 0 0 0 0 24163 4286 25230;25231 127498;127499;127500 128396;128397;128398;128399 128399 1918 4 MEMAFNTR FPVMKKCCIPETRRRMEMAFNTRCKEENTI IPETRRRMEMAFNTRCKEENTIILQQLLPL R M E T R C 1 1 1 0 0 0 1 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 8 0 998.43137 Q9BYT8;E9PCB6 Q9BYT8 264 271 NLN Neurolysin, mitochondrial yes no 2 0.047416 35.295 By MS/MS 1 1.3388 1.1601 NaN 1 Median NaN NaN NaN 0 0 Median 1.3388 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3807900 1656000 2151900 0 0 0 3807900 1656000 2151900 0 0 0 0 0 0 0 0 0 0 0 0 24164 3895 25232 127501 128400 128400 1 MEMEMEQVFEMK QMEEERREHVAKMKKMEMEMEQVFEMKVKE MKKMEMEMEQVFEMKVKEKVQKLKDSEAEL K M E M K V 0 0 0 0 0 1 4 0 0 0 0 1 4 1 0 0 0 0 0 1 0 0 12 0 1560.6332 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 333 344 SEPT7;DKFZp586I031 Septin-7 yes no 2 7.942E-06 102.06 By matching By MS/MS By MS/MS 1 5 7 1.2005 1.0681 9.2404 13 Median 1.1086 1.0681 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9814 0.95544 3.9122 5 0 Median 1.2472 1.1068 5.8228 7 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52437000 24809000 27628000 294370 147000 147370 0 0 0 37918000 18910000 19008000 14224000 5752300 8472000 0 0 0 0 0 0 24165 870 25233;25234;25235;25236 127502;127503;127504;127505;127506;127507;127508;127509;127510;127511;127512;127513;127514 128401;128402;128403;128404;128405;128406;128407;128408;128409;128410;128411 128407 313;314;315;316 11 MENDFLPSLELSR RYRKVFEDSVRIMDRMENDFLPSLELSRRE DRMENDFLPSLELSRREFVFENVKFRQLQK R M E S R R 0 1 1 1 0 0 2 0 0 0 3 0 1 1 1 2 0 0 0 0 0 0 13 0 1549.7446 Q01968;A0A2R8YG38;A0A2R8YCN4 Q01968 557 569 OCRL Inositol polyphosphate 5-phosphatase OCRL-1 yes no 2 0.031759 26.673 By matching By MS/MS By matching 1 1 2 1.2254 1.0962 22.288 4 Median NaN NaN NaN 0 0 Median 1.8626 1.634 NaN 1 0 Median 1.0047 1.0779 NaN 1 0 Median 1.2254 1.0493 8.5574 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1939100 867080 1072100 0 0 0 343620 166820 176800 1404200 611400 792840 191280 88862 102420 0 0 0 0 0 0 24166 2694 25237 127515;127516;127517;127518 128412 128412 1 MENELPVPHTSSSACATSSTSGASSSSGCNNSSSGGSGR ______________________________ SSSGCNNSSSGGSGRPTGPQISVYSGIPDR - M E G R P 3 1 3 0 2 0 2 5 1 0 1 0 1 0 2 14 3 0 0 1 0 0 39 0 3788.5544 Q8IXK0;A0A0A0MSI2 Q8IXK0 1 39 PHC2 Polyhomeotic-like protein 2 yes no 3 0.074649 4.8568E-12 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 582730 582730 0 0 0 0 582730 582730 0 0 0 0 0 0 0 0 0 0 0 0 0 24167 180 25238 127519 128413 128413 1 MENILSGNPLLNLTGPSQPQANFK ARKEQEQKAEEERIRMENILSGNPLLNLTG LLNLTGPSQPQANFKVKRRWDDDVVFKNCA R M E F K V 1 0 4 0 0 2 1 2 0 1 4 1 1 1 3 2 1 0 0 0 0 0 24 0 2582.3163 Q9P013 Q9P013 160 183 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 3 0.061168 6.7984 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 0.67891 0.60781 11.479 5 Median 0.69562 0.68005 NaN 1 0 Median 0.66787 0.5627 NaN 1 0 Median 0.54224 0.52069 NaN 1 0 Median 0.71804 0.60781 NaN 1 0 Median 0.67891 0.67266 NaN 1 0 Median NaN NaN NaN 0 0 Median 14686000 8299100 6387300 2497000 1330000 1167100 2677900 1443100 1234800 6475800 3909600 2566200 210260 113960 96301 2825300 1502500 1322900 0 0 0 24168 4196 25239 127520;127521;127522;127523;127524 128414;128415;128416 128414 3 MENQVLTPHVYWAQR ______________________________ MENQVLTPHVYWAQRHRELYLRVELSDVQN - M E Q R H 1 1 1 0 0 2 1 0 1 0 1 0 1 0 1 0 1 1 1 2 0 0 15 0 1870.9148 Q9P035;H3BS72 Q9P035 1 15 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 9.3172E-14 174.24 By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1.0439 1.0102 7.7321 10 Median 0.93901 0.9168 5.9174 4 0 Median 1.1979 1.0304 5.7165 3 0 Median 1.0106 1.0659 3.2084 2 0 Median 1.1893 1.0351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107640000 50686000 56952000 78443000 36641000 41802000 5859800 2640200 3219700 23263000 11364000 11899000 72041 40661 31380 0 0 0 0 0 0 24169 4200 25240;25241 127525;127526;127527;127528;127529;127530;127531;127532;127533;127534 128417;128418;128419;128420;128421;128422;128423;128424;128425;128426;128427;128428;128429 128422 1898 13 MEPDGTYEPGFVGIR ______________________________ MEPDGTYEPGFVGIRFCQECNNMLYPKEDK - M E I R F 0 1 0 1 0 0 2 3 0 1 0 0 1 1 2 0 1 0 1 1 0 0 15 0 1666.7661 P36954;K7EK49;K7EKS1 P36954 1 15 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes no 2 0.00016356 69.01 By MS/MS By matching By matching 1 1 1 0.91508 0.81162 31.834 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68825 0.69735 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1581 1.2852 NaN 1 0 Median 0.91508 0.81162 NaN 1 0 Median 5507600 2920100 2587500 0 0 0 0 0 0 3662900 2102600 1560300 0 0 0 1660400 717480 942880 184330 100000 84331 24170 2264 25242 127535;127536;127537 128430 128430 1011 1 MEPLNNLQVAVK IDVSLPLNTLGPVMKMEPLNNLQVAVKNNI VMKMEPLNNLQVAVKNNIDVFYFSCLIPLN K M E V K N 1 0 2 0 0 1 1 0 0 0 2 1 1 0 1 0 0 0 0 2 0 0 12 0 1354.7279 Q10567;A0A087X253;P63010 A0A087X253 773 784 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.00063335 92.062 By MS/MS 1 0.87267 0.8438 NaN 1 Median 0.87267 0.8438 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12899000 7313700 5585600 12899000 7313700 5585600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24171 128;2752 25243 127538 128431;128432 128432 2 MEPPGGSLGPGR ______________________________ ______________________________ - M E G R G 0 1 0 0 0 0 1 4 0 0 1 0 1 0 3 1 0 0 0 0 0 0 12 0 1153.555 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;B4E2I7 A0A0G2JH68 1 12 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0015304 52.278 By MS/MS 1 2.023 1.9232 NaN 1 Median 2.023 1.9232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501500 2723500 2778000 5501500 2723500 2778000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24172 274 25244 127539 128433 128433 1 MEQELKEPGR LGCDSIEKLKAQIPKMEQELKEPGRFKDFY AQIPKMEQELKEPGRFKDFYQFTFNFAKNP K M E G R F 0 1 0 0 0 1 3 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 10 1 1215.5918 Q96GG9;C9JVE2 Q96GG9 144 153 DCUN1D1 DCN1-like protein 1;DCN1-like protein yes no 3 0.009853 40.589 By MS/MS By MS/MS By MS/MS 1 1 1 0.79141 0.81577 24.183 3 Median 0.5217 0.54905 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.79141 0.81577 NaN 1 0 Median 0.96166 0.85127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5106200 2916800 2189400 1332500 847410 485080 0 0 0 2884000 1628300 1255600 889760 441090 448670 0 0 0 0 0 0 24173 3657 25245 127540;127541;127542 128434;128435;128436;128437 128435 4 MEQLSSANTR ______________________________ ______________________________ - M E T R F 1 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 10 0 1135.5292 P30740 P30740 1 10 SERPINB1 Leukocyte elastase inhibitor yes yes 2 0.0063361 49.418 By MS/MS 1 0.7851 0.7811 NaN 1 Median 0.7851 0.7811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3837400 2114400 1723000 3837400 2114400 1723000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24174 2197 25246 127543 128438;128439 128438 2 MEQVAEGAR ______________________________ ______________________________ - M E A R V 2 1 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 9 0 989.46003 Q99549 Q99549 1 9 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.0093719 49.418 By MS/MS 1 1.111 1.1761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.111 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median 2878500 1370800 1507700 0 0 0 0 0 0 0 0 0 0 0 0 2878500 1370800 1507700 0 0 0 24175 3752 25247 127544 128440 128440 1 MEQVNELKEK ______________________________ ______________________________ - M E E K G 0 0 1 0 0 1 3 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 10 1 1246.6227 P31948;F5H783;F5GXD8 P31948 1 10 STIP1 Stress-induced-phosphoprotein 1 yes no 2 2.7357E-05 135.55 By MS/MS By MS/MS 2 1 1.037 0.96839 16.937 3 Median 1.0016 0.92521 23.661 2 1 Median 1.037 0.96839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 279410000 141760000 137640000 269570000 137760000 131810000 9837100 4003200 5833900 0 0 0 0 0 0 0 0 0 0 0 0 24176 2212 25248;25249 127545;127546;127547 128441;128442;128443;128444;128445 128444 958 5 MESAIAEGGASR ______________________________ ______________________________ - M E S R F 3 1 0 0 0 0 2 2 0 1 0 0 1 0 0 2 0 0 0 0 0 0 12 0 1177.5397 P78344 P78344 1 12 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes yes 2 0.00062566 68.657 By MS/MS By matching 1 2 1.2268 1.1862 24.074 3 Plateau 1.2268 1.1862 NaN 1 0 Median 0.9252 0.80946 13.614 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7517400 3588300 3929100 4824700 2265800 2558900 2692700 1322500 1370200 0 0 0 0 0 0 0 0 0 0 0 0 24177 2639 25250 127548;127549;127550 128446 128446 1 MESALDQLK ______________________________ PVKRQRMESALDQLKQFTTVVADTGDFHAI R M E L K Q 1 0 0 1 0 1 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 9 0 1033.5114 P37837;F2Z393;E9PM01;E9PKI8 P37837 11 19 TALDO1 Transaldolase yes no 2 0.0011093 85.161 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1401 0.97159 7.1858 5 Median 0.96899 0.88915 NaN 1 0 Median 1.1832 0.99995 4.0685 2 0 Median 1.0133 0.97127 NaN 1 0 Median 1.2755 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106310000 52885000 53426000 60334000 32199000 28135000 39488000 17185000 22304000 5131000 2888400 2242500 1358300 613340 744920 0 0 0 0 0 0 24178 2270 25251 127551;127552;127553;127554;127555 128447;128448;128449;128450;128451;128452 128447 6 MESDFYLR ______________________________ ______________________________ - M E L R Y 0 1 0 1 0 0 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 8 0 1059.4695 P61326 P61326 1 8 MAGOH Protein mago nashi homolog yes yes 2 0.0027966 79.116 By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 5 2 1.2014 1.0891 21.748 15 Median 0.93744 0.95345 35.401 3 0 Median 1.4638 1.2192 NaN 1 0 Median 1.1868 1.2034 2.6133 2 0 Median 1.3807 1.0862 0.11579 2 0 Median 1.1801 1.2053 10.317 5 0 Median 1.3901 1.0767 1.622 2 0 Median 32191000 14850000 17341000 3989100 2394800 1594300 919340 376870 542470 15154000 6751400 8403100 6440700 2679500 3761200 4267100 1989600 2277500 1419700 657560 762160 24179 2556 25252;25253 127556;127557;127558;127559;127560;127561;127562;127563;127564;127565;127566;127567;127568;127569;127570 128453;128454;128455;128456;128457 128454 1232 5 MESGDEAAIER ______________________________ ______________________________ - M E E R H 2 1 0 1 0 0 3 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 11 0 1206.5187 E9PN81;Q8TDP1 E9PN81 1 11 RNASEH2C Ribonuclease H2 subunit C yes no 2 0.00021325 100.48 By MS/MS By matching 1 1 1.0689 0.97126 13.254 2 Median 0.89889 0.88437 NaN 1 0 Median 1.271 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6619300 3278700 3340600 6204900 3098400 3106500 414430 180310 234130 0 0 0 0 0 0 0 0 0 0 0 0 24180 972 25254 127571;127572 128458;128459 128458 2 MESPIPILPLPTPDAETEK HCIQQMTSKLTQDSRMESPIPILPLPTPDA IPILPLPTPDAETEKLIRMK__________ R M E E K L 1 0 0 1 0 0 3 0 0 2 2 1 1 0 5 1 2 0 0 0 0 0 19 0 2077.0653 C9JM82;B4DJ62;G3XAH0;Q99719 C9JM82 278 296 SEPT5 Septin-5 yes no 2 0.041788 20.953 By MS/MS By matching 1 1 0.49684 0.48081 43.307 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32684 0.35398 NaN 1 0 Median 0.75527 0.65308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3158100 2215700 942380 0 0 0 0 0 0 3046700 2146400 900290 111390 69295 42094 0 0 0 0 0 0 24181 592 25255 127573;127574 128460;128461;128462 128460 3 MESQLSASKPTGGLPETAR GFHSEIEDFLLELTRMESQLSASKPTGGLP LSASKPTGGLPETAREQLDTHMELYSQLKA R M E A R E 2 1 0 0 0 1 2 2 0 0 2 1 1 0 2 3 2 0 0 0 0 0 19 1 1958.9731 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6452 6470 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 9.7646E-19 116.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.84632 0.83541 14.221 4 Median 0.71811 0.7512 NaN 1 0 Median 1.058 0.97086 NaN 1 0 Median 0.63527 0.7371 NaN 1 0 Median 0.99742 0.92906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81799000 44914000 36885000 21368000 12021000 9347000 42032000 22429000 19603000 15841000 9226200 6614900 2558100 1238500 1319600 0 0 0 0 0 0 24182 1220 25256 127575;127576;127577;127578 128463;128464;128465;128466;128467;128468;128469 128464 7 MESRDPAQPMSPGEATQSGARPADR ______________________________ SPGEATQSGARPADRYGLLKHSREFLDFFW - M E D R Y 4 3 0 2 0 2 2 2 0 0 0 0 2 0 4 3 1 0 0 0 0 0 25 2 2641.1973 Q9BQG0 Q9BQG0 1 25 MYBBP1A Myb-binding protein 1A yes yes 3 6.1013E-09 49.25 By MS/MS 1 0.47676 0.54402 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47676 0.54402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11804000 7389500 4414900 0 0 0 0 0 0 11804000 7389500 4414900 0 0 0 0 0 0 0 0 0 24183 3789 25257 127579 128470;128471 128470 2 MESSINHISQTVDIHK NVLQLLDIQASQLRRMESSINHISQTVDIH ESSINHISQTVDIHKEKVARREIGILTTNK R M E H K E 0 0 1 1 0 1 1 0 2 3 0 1 1 0 0 3 1 0 0 1 0 0 16 0 1837.8992 B6VEX4;A0A0A0MRT6;Q8IZP0;E9PEZ7;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9 B6VEX4 86 101 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 3 0.00016025 44.807 By MS/MS By MS/MS 1 2 1.0714 0.99646 17.532 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1326 1.1417 NaN 1 0 Median 0.98482 0.84593 3.9173 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8829200 4037500 4791700 0 0 0 0 0 0 4546300 2029200 2517100 4282900 2008300 2274600 0 0 0 0 0 0 24184 171 25258 127580;127581;127582 128472;128473;128474;128475 128475 4 MESVFNHAIR EVIAMIKGLQVLMGRMESVFNHAIRHTVYA VLMGRMESVFNHAIRHTVYAALQDFSQVTL R M E I R H 1 1 1 0 0 0 1 0 1 1 0 0 1 1 0 1 0 0 0 1 0 0 10 0 1202.5866 Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JQH3;A0A087WVZ5 Q7L576 468 477 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 2;3 0.00017435 98.392 By matching By matching By MS/MS 1 1 3 1.0347 0.95048 13.639 4 Median 0.99741 0.99856 NaN 1 0 Median 1.1523 0.98901 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96779 0.8246 14.471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6999500 3512700 3486800 1388800 543070 845770 1912200 871690 1040500 0 0 0 3698500 2098000 1600500 0 0 0 0 0 0 24185 3224 25259;25260 127583;127584;127585;127586;127587 128476;128477;128478 128477 1691 3 MESVFNQAIR EVIAMIKGLQVLMGRMESVFNQAIRNTIYA VLMGRMESVFNQAIRNTIYAALQDFAQVTL R M E I R N 1 1 1 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 10 0 1193.5863 E7EVJ5;H7C229;E7EW33;Q96F07 E7EVJ5 441 450 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 2 0.00047649 92.439 By MS/MS By MS/MS 1 3 0.96129 0.93074 18.187 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93908 1.0329 NaN 1 0 Median 0.98402 0.83871 20.99 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10363000 4838400 5525000 0 0 0 0 0 0 6360100 2997100 3363000 4003400 1841300 2162100 0 0 0 0 0 0 24186 897 25261;25262 127588;127589;127590;127591 128479;128480;128481;128482 128479 327 4 MESYDVIANQPVVIDNGSGVIK ______________________________ ANQPVVIDNGSGVIKAGFAGDQIPKYCFPN - M E I K A 1 0 2 2 0 1 1 2 0 3 0 1 1 0 1 2 0 0 1 4 0 0 22 0 2347.173 P61163;R4GMT0;A0A1B0GVS3 P61163 1 22 ACTR1A Alpha-centractin yes no 2 4.2407E-09 58.487 By MS/MS By MS/MS 1 1 0.84225 0.85657 3.844 2 Median 0.91185 0.88017 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77796 0.8336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5313300 2670500 2642800 1499500 727930 771570 0 0 0 3813800 1942500 1871300 0 0 0 0 0 0 0 0 0 24187 2547 25263 127592;127593 128483;128484 128484 2 MESYHKPDQQK ______________________________ ______________________________ - M E Q K L 0 0 0 1 0 2 1 0 1 0 0 2 1 0 1 1 0 0 1 0 0 0 11 1 1389.6347 P29401;E9PFF2;F8W888;F8WAX4 P29401 1 11 TKT Transketolase yes no 2;3 0.00012749 73.067 By MS/MS By MS/MS By matching 2 2 1 0.89735 0.82857 6.0706 5 Median 0.84325 0.79669 0.14197 2 0 Median 0.94639 0.88339 6.2804 2 0 Median NaN NaN NaN 0 0 Median 0.89735 0.82857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41081000 21531000 19550000 13942000 7887300 6054900 26752000 13501000 13251000 0 0 0 386950 143020 243930 0 0 0 0 0 0 24188 2173 25264 127594;127595;127596;127597;127598 128485;128486;128487;128488;128489 128489 5 METEQPEETFPNTETNGEFGK ______________________________ EETFPNTETNGEFGKRPAEDMEEEQAFKRS - M E G K R 0 0 2 0 0 1 6 2 0 0 0 1 1 2 2 0 4 0 0 0 0 0 21 0 2414.022 P61978;S4R457;Q5T6W2 P61978 1 21 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 2.793E-25 140.1 By MS/MS By matching By matching 4 4 3 0.67571 0.66686 9.0658 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66955 0.65423 1.6994 4 0 Median 0.87712 0.76834 1.6861 4 0 Median 0.67081 0.64583 3.8889 3 0 Median NaN NaN NaN 0 0 Median 50651000 30143000 20508000 0 0 0 0 0 0 44004000 26129000 17874000 1830700 1122200 708470 4816800 2891900 1924800 0 0 0 24189 2565;3093 25265;25266 127599;127600;127601;127602;127603;127604;127605;127606;127607;127608;127609 128490;128491;128492;128493;128494;128495;128496;128497;128498;128499 128496 1239 10 METILEQQR ______________________________ ______________________________ - M E Q R R 0 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1146.5703 Q12874 Q12874 1 9 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.0008977 81.548 By MS/MS By MS/MS By MS/MS By matching 3 4 5 2 1.1125 0.99382 20.018 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1296 1.1209 21.071 3 0 Plateau 1.3404 1.1585 12.518 4 0 Median 0.93005 0.98942 10.624 5 0 Median 1.4292 1.1772 47.013 2 0 Median 78910000 37829000 41082000 0 0 0 0 0 0 50830000 24259000 26571000 3675600 1558000 2117600 23784000 11778000 12007000 620570 234270 386300 24190 2767 25267;25268 127610;127611;127612;127613;127614;127615;127616;127617;127618;127619;127620;127621;127622;127623 128500;128501;128502;128503;128504 128503 1482 5 METILEQQRR ______________________________ ______________________________ - M E R R Y 0 2 0 0 0 2 2 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 10 1 1302.6714 Q12874 Q12874 1 10 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.00047762 100.15 By MS/MS By MS/MS 1 1 1.1899 1.2343 7.2149 2 Median 1.3183 1.2989 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.074 1.1729 NaN 1 0 Median NaN NaN NaN 0 0 Median 40173000 18759000 21414000 8939800 3827300 5112500 0 0 0 0 0 0 0 0 0 31233000 14931000 16302000 0 0 0 24191 2767 25269 127624;127625 128505;128506;128507 128507 3 METMASPGKDNYR ______________________________ ______________________________ - M E Y R M 1 1 1 1 0 0 1 1 0 0 0 1 2 0 1 1 1 0 1 0 0 0 13 1 1498.6544 O60684;S4R3E5 O60684 1 13 KPNA6 Importin subunit alpha-7 yes no 2 4.1768E-07 120.09 By MS/MS 1 0.76218 0.76515 NaN 1 Median 0.76218 0.76515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7263300 4181000 3082300 7263300 4181000 3082300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24192 1626 25270 127626 128508;128509 128509 2 METVLGQSMSSLPLSYR CYRKMEEDIYTNLSKMETVLGQSMSSLPLS TVLGQSMSSLPLSYREALERLEQSKALVSN K M E Y R E 0 1 0 0 0 1 1 1 0 0 3 0 2 0 1 4 1 0 1 1 0 0 17 0 1897.9278 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3378 3394 SYNE2 Nesprin-2 yes no 2 2.7598E-05 56.225 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 0.67341 0.71203 89.343 6 Median 0.64855 0.65482 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72841 0.80676 5.8176 2 2 Median 0.60108 0.52104 NaN 1 0 Median 0.88955 0.90441 NaN 1 0 Median 0.085701 0.085822 NaN 1 0 Median 9059100 5310800 3748300 3359200 1914900 1444300 0 0 0 4909300 2798900 2110400 67889 43075 24815 179270 64920 114350 543460 489020 54447 24193 3521 25271 127627;127628;127629;127630;127631;127632 128510;128511;128512 128510 3 MEVDEAEK AKKKEKEKEKKEEEKMEVDEAEKKEEKEKK EKKEEEKMEVDEAEKKEEKEKKKEPEPNFQ K M E E K K 1 0 0 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 8 0 949.40626 A0A087WW66;Q99460 A0A087WW66 854 861 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.01642 49.423 By MS/MS 1 1.277 1.1103 NaN 1 Median NaN NaN NaN 0 0 Median 1.277 1.1103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3033700 1122500 1911200 0 0 0 3033700 1122500 1911200 0 0 0 0 0 0 0 0 0 0 0 0 24194 54 25272 127633 128513 128513 1 MEVDEAEKKEEK AKKKEKEKEKKEEEKMEVDEAEKKEEKEKK EEKMEVDEAEKKEEKEKKKEPEPNFQLLDN K M E E K E 1 0 0 1 0 0 5 0 0 0 0 3 1 0 0 0 0 0 0 1 0 0 12 2 1463.6814 A0A087WW66;Q99460 A0A087WW66 854 865 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 0.00019827 69.864 By matching By MS/MS 1 1 1.001 0.99878 8.3764 2 Median 1.0109 1.0597 NaN 1 0 Median 0.99116 0.94134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3657400 1650800 2006600 473350 218190 255160 3184000 1432600 1751400 0 0 0 0 0 0 0 0 0 0 0 0 24195 54 25273 127634;127635 128514;128515 128515 2 MEVDYSATVDQR MADGGSERADGRIVKMEVDYSATVDQRLPE IVKMEVDYSATVDQRLPECAKLAKEGRLQE K M E Q R L 1 1 0 2 0 1 1 0 0 0 0 0 1 0 0 1 1 0 1 2 0 0 12 0 1412.6242 O00232;J3KTJ5;J3KSK1 O00232 16 27 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes no 2 0.0041475 44.309 By MS/MS 1 1.3061 1.1175 NaN 1 Median NaN NaN NaN 0 0 Median 1.3061 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2964300 1293500 1670800 0 0 0 2964300 1293500 1670800 0 0 0 0 0 0 0 0 0 0 0 0 24196 1449 25274 127636 128516;128517;128518 128518 3 MEVELITR GAWDMIDSQVFKEPKMEVELITRFLPMLMS QVFKEPKMEVELITRFLPMLMSFLVDDYTF K M E T R F 0 1 0 0 0 0 2 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 8 0 989.52157 Q8WX92 Q8WX92 365 372 NELFB Negative elongation factor B yes yes 2 0.0034695 94.302 By MS/MS By MS/MS 1 2 0.89218 0.87372 67.982 3 Median 0.89218 0.85004 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4986 1.5632 82.272 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20969000 9371700 11597000 10413000 5248200 5165200 0 0 0 10555000 4123500 6431600 0 0 0 0 0 0 0 0 0 24197 3514 25275;25276 127637;127638;127639 128519;128520;128521;128522 128520 1751 4 MEVISLQNEK ELSKAEKNSNVETLKMEVISLQNEKADLDR VETLKMEVISLQNEKADLDRTLRKLDQEME K M E E K A 0 0 1 0 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 10 0 1189.6013 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7ESD9;A0A494C0Y7 Q92878 502 511 RAD50 DNA repair protein RAD50 yes no 2 0.00036244 108.98 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2124 1.1309 12.25 4 Median 1.1867 1.1472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0214 1.0885 NaN 1 0 Median 1.2386 1.1149 NaN 1 0 Median 1.3575 1.4212 NaN 1 1 Median NaN NaN NaN 0 0 Median 44110000 20780000 23330000 8413000 4245000 4168100 0 0 0 22537000 10872000 11665000 6708300 2907600 3800800 6451700 2755500 3696200 0 0 0 24198 3561 25277 127640;127641;127642;127643 128523;128524;128525;128526 128526 4 MEVISLQNEKADLDR ELSKAEKNSNVETLKMEVISLQNEKADLDR MEVISLQNEKADLDRTLRKLDQEMEQLNHH K M E D R T 1 1 1 2 0 1 2 0 0 1 2 1 1 0 0 1 0 0 0 1 0 0 15 1 1759.8774 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7ESD9;A0A494C0Y7 Q92878 502 516 RAD50 DNA repair protein RAD50 yes no 2;3 2.3595E-10 130.01 By MS/MS By MS/MS By matching 2 3 1 0.94583 0.96298 25.924 6 Median 1.2005 1.2014 40.268 2 1 Median NaN NaN NaN 0 0 Median 0.98953 1.1217 20.313 3 0 Plateau 0.98179 0.86909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34588000 15970000 18619000 7738400 2976500 4761900 0 0 0 26036000 12614000 13422000 814250 379240 435010 0 0 0 0 0 0 24199 3561 25278 127644;127645;127646;127647;127648;127649 128527;128528;128529;128530;128531 128528 5 MEVKPPPGRPQPDSGR ______________________________ EVKPPPGRPQPDSGRRRRRRGEEGHDPKEP - M E G R R 0 2 0 1 0 1 1 2 0 0 0 1 1 0 5 1 0 0 0 1 0 0 16 2 1746.8835 P51991 P51991 1 16 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 1.3454E-07 96.163 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 8 5 0.46813 0.56135 17.527 19 Median 0.59144 0.66676 NaN 1 0 Median 0.68632 0.7604 NaN 1 0 Median 0.43481 0.55782 3.8557 2 0 Median 0.66618 0.60231 3.8098 2 0 Median 0.44617 0.49862 16.845 8 1 Median 0.63168 0.5946 8.0897 5 1 Median 428580000 283210000 145370000 1661200 1170400 490810 7253200 4273400 2979700 190870000 129810000 61068000 34768000 20000000 14769000 182130000 120880000 61248000 11890000 7078300 4812000 24200 2446 25279;25280 127650;127651;127652;127653;127654;127655;127656;127657;127658;127659;127660;127661;127662;127663;127664;127665;127666;127667;127668 128532;128533;128534;128535;128536;128537;128538;128539;128540;128541;128542;128543;128544;128545;128546;128547 128545 1142 16 MEVQEQEEDISSLIR DNSMNVDQDGDPSDRMEVQEQEEDISSLIR MEVQEQEEDISSLIRSCKFSMKMKMIDSAR R M E I R S 0 1 0 1 0 2 4 0 0 2 1 0 1 0 0 2 0 0 0 1 0 0 15 0 1804.8513 P78527 P78527 3218 3232 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.6322E-25 172.34 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 3 7 3 3 1 1.0439 1.0361 20.464 23 Median 1.0037 0.9879 9.3126 6 2 Median 1.2651 1.0274 19.35 3 0 Median 0.87429 0.92234 19.214 7 2 Median 1.3399 1.1621 5.8426 3 0 Median 1.4496 1.5225 41.912 3 1 Plateau 1.4067 1.1585 NaN 1 0 Median 117760000 57841000 59921000 57500000 29506000 27994000 14887000 5973600 8913900 40004000 19918000 20086000 721050 313520 407530 4213500 1968600 2244900 435760 161160 274600 24201 2647 25281;25282 127669;127670;127671;127672;127673;127674;127675;127676;127677;127678;127679;127680;127681;127682;127683;127684;127685;127686;127687;127688;127689;127690;127691 128548;128549;128550;128551;128552;128553;128554;128555;128556;128557;128558;128559;128560;128561;128562;128563;128564;128565;128566;128567 128561 1325 20 MEVSPLQPVNENMQVNK ______________________________ VSPLQPVNENMQVNKIKKNEDAKKRLSVER - M E N K I 0 0 3 0 0 2 2 0 0 0 1 1 2 0 2 1 0 0 0 3 0 0 17 0 1955.9445 P11388 P11388 1 17 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.5506E-06 84.479 By MS/MS By matching By MS/MS 1 2 3 0.80418 0.84199 23.36 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69059 0.7649 NaN 1 0 Median 1.0852 0.97597 1.0054 2 0 Median 0.83299 0.87263 27.948 3 1 Plateau NaN NaN NaN 0 0 Median 40586000 22463000 18123000 0 0 0 0 0 0 8589400 4592400 3997000 613870 266690 347180 31382000 17603000 13779000 0 0 0 24202 1963 25283;25284 127692;127693;127694;127695;127696;127697 128568;128569;128570;128571 128568 743 4 MEVSVSDK ACSKQTLSSLKLDCKMEVSVSDKLAVVDEW SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW K M E D K L 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 0 2 0 0 8 0 893.41643 Q8NFW8 Q8NFW8 343 350 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.012238 55.37 By MS/MS 1 1.0586 1.0381 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0586 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6143900 2826100 3317800 0 0 0 0 0 0 6143900 2826100 3317800 0 0 0 0 0 0 0 0 0 24203 3441 25285 127698 128572;128573 128572 2 MEVTGDAGVPESGEIR ______________________________ EVTGDAGVPESGEIRTLKPCLLRRNYSREQ - M E I R T 1 1 0 1 0 0 3 3 0 1 0 0 1 0 1 1 1 0 0 2 0 0 16 0 1645.7618 O00273;K7ERT1 O00273 1 16 DFFA DNA fragmentation factor subunit alpha yes no 2 0.00071716 57.019 By MS/MS 1 1.5645 1.6953 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5645 1.6953 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4609400 1439200 3170200 0 0 0 0 0 0 4609400 1439200 3170200 0 0 0 0 0 0 0 0 0 24204 1454 25286 127699 128574 128574 1 MEWGSESAAVRR ______________________________ ______________________________ - M E R R H 2 2 0 0 0 0 2 1 0 0 0 0 1 0 0 2 0 1 0 1 0 0 12 1 1377.6459 Q7Z2K6;E7ER77 Q7Z2K6 1 12 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2 0.0010711 71.349 By MS/MS 1 1.1361 1.2347 NaN 1 Median 1.1361 1.2347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7215300 2921500 4293800 7215300 2921500 4293800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24205 883 25287 127700 128575 128575 1 MFADDLHNLNKR ______________________________ GSRMFADDLHNLNKRIRYLYKHFNRHGKFR R M F K R I 1 1 2 2 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 0 0 12 1 1472.7194 M0R176;A0A087WU28;A0A0B4J2C1;Q4U2R6 M0R176 6 17 MRPL51 39S ribosomal protein L51, mitochondrial yes no 3 3.1406E-05 89.283 By MS/MS By MS/MS By MS/MS 1 1 1 1.4468 1.292 15.046 3 Plateau 0.97522 0.95629 NaN 1 0 Median 1.4634 1.292 NaN 1 0 Median 1.0708 1.1153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15075000 6260500 8814200 2847600 1472100 1375500 8108800 3168000 4940800 4118300 1620400 2497900 0 0 0 0 0 0 0 0 0 24206 23 25288 127701;127702;127703 128576;128577;128578;128579;128580;128581 128580 6 MFADYLAHESR DEIKPSSAPELQAVRMFADYLAHESRRDSI QAVRMFADYLAHESRRDSIVAELDREMSRS R M F S R R 2 1 0 1 0 0 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 11 0 1338.6027 O14579;M0QXB4;M0R061 O14579 86 96 COPE Coatomer subunit epsilon yes no 2;3 0.00056506 55.452 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2549 1.2359 16.916 5 Median 1.2673 1.1843 24.309 2 1 Median 1.199 1.0061 NaN 1 0 Median 1.2549 1.2359 NaN 1 0 Median 1.6632 1.3974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24453000 9866500 14586000 18540000 7357100 11183000 2572300 1208800 1363500 2944800 1139900 1804900 395710 160640 235070 0 0 0 0 0 0 24207 1409 25289 127704;127705;127706;127707;127708 128582;128583;128584;128585;128586;128587 128585 6 MFADYLAHESRR DEIKPSSAPELQAVRMFADYLAHESRRDSI AVRMFADYLAHESRRDSIVAELDREMSRSV R M F R R D 2 2 0 1 0 0 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 12 1 1494.7038 O14579;M0QXB4;M0R061 O14579 86 97 COPE Coatomer subunit epsilon yes no 3 8.2475E-06 96.229 By MS/MS By MS/MS By matching 1 1 1 1.1829 1.2373 65.119 3 Median 1.1493 1.2373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1829 1.1039 NaN 1 0 Median 3.3676 3.5945 NaN 1 0 Median NaN NaN NaN 0 0 Median 33032000 14941000 18091000 28881000 14049000 14832000 0 0 0 0 0 0 1351300 446400 904850 2800100 445870 2354200 0 0 0 24208 1409 25290 127709;127710;127711 128588;128589 128588 2 MFAEIMMK SGDSVKTIAKLWDSKMFAEIMMKIEEYISK AKLWDSKMFAEIMMKIEEYISKQAKASEVM K M F M K I 1 0 0 0 0 0 1 0 0 1 0 1 3 1 0 0 0 0 0 0 0 0 8 0 999.45917 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 59 66 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.010382 58.981 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.4414 1.3345 46.942 6 Median NaN NaN NaN 0 0 Median 1.3833 1.2284 NaN 1 0 Median 1.4617 1.4834 59.81 2 0 Median 2.9813 2.6547 NaN 1 0 Median 1.502 1.4497 NaN 1 0 Median 0.93231 0.80133 NaN 1 0 Median 9899600 4783300 5116400 0 0 0 284550 128990 155550 8496800 4207100 4289700 184800 52481 132320 782430 342240 440200 151110 52513 98596 24209 3513 25291 127712;127713;127714;127715;127716;127717 128590 128590 1 MFASLFPHNPQFIGR ILNNFTTRLGHSIGRMFASLFPHNPQFIGR MFASLFPHNPQFIGRQVATFHNQRDYIFFR R M F G R Q 1 1 1 0 0 1 0 1 1 1 1 0 1 3 2 1 0 0 0 0 0 0 15 0 1760.8821 Q9H9Y2 Q9H9Y2 262 276 RPF1 Ribosome production factor 1 yes yes 3 0.056722 10.944 By MS/MS 1 0.93069 0.97503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93069 0.97503 NaN 1 0 Median NaN NaN NaN 0 0 Median 4540500 1700700 2839800 0 0 0 0 0 0 0 0 0 0 0 0 4540500 1700700 2839800 0 0 0 24210 4003 25292 127718 128591;128592 128591 2 MFDMGFEPQVMR NLRRVTYVVLDEADRMFDMGFEPQVMRIVD ADRMFDMGFEPQVMRIVDNVRPDRQTVMFS R M F M R I 0 1 0 1 0 1 1 1 0 0 0 0 3 2 1 0 0 0 0 1 0 0 12 0 1486.6407 Q7L014;A0A0C4DG89 Q7L014 534 545 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 3.1802E-06 109.66 By MS/MS By matching By MS/MS By matching 1 1 3 1 0.96049 0.99048 22.167 6 Median 0.96821 0.93624 NaN 1 0 Median 0.94474 0.81931 NaN 1 0 Median 0.95283 1.0479 17.042 3 2 Median NaN NaN NaN 0 0 Median 1.3904 1.4695 NaN 1 0 Median NaN NaN NaN 0 0 Median 19781000 9787200 9993500 4176900 2129100 2047800 1321100 644830 676240 13777000 6816600 6960100 0 0 0 506000 196610 309390 0 0 0 24211 3216 25293;25294 127719;127720;127721;127722;127723;127724 128593;128594;128595;128596;128597;128598 128596 1686 6 MFDYTDDPEGPVMPGSHSVER HTEDSVYPMPRVIFRMFDYTDDPEGPVMPG DPEGPVMPGSHSVERFVIEENLHCIIKSHW R M F E R F 0 1 0 3 0 0 2 2 1 0 0 0 2 1 3 2 1 0 1 2 0 0 21 0 2364.9991 Q09161 Q09161 291 311 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 3 0.00030183 29.444 By matching By matching By matching By matching By MS/MS 1 1 2 1 2 0.70474 0.69419 14.982 7 Median 0.716 0.69419 NaN 1 0 Median 0.70474 0.63476 NaN 1 0 Median 0.5412 0.57779 13.479 2 0 Median 0.93094 0.78431 NaN 1 0 Median 0.74938 0.7646 10.206 2 0 Median NaN NaN NaN 0 0 Median 19708000 10559000 9148400 3489600 2005500 1484200 992910 583590 409310 6414800 3503100 2911700 316250 149790 166470 8494200 4317400 4176800 0 0 0 24212 2747 25295 127725;127726;127727;127728;127729;127730;127731 128599 128599 1 MFEDPETTR AQLKQLQAETEPIVKMFEDPETTRQMQSTR TEPIVKMFEDPETTRQMQSTRDGRMLFDYL K M F T R Q 0 1 0 1 0 0 2 0 0 0 0 0 1 1 1 0 2 0 0 0 0 0 9 0 1124.4808 P60228;E5RGA2;H0YBR5;E5RIT4 P60228 94 102 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.00091857 90.657 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.0549 0.96647 7.7744 5 Median 0.89645 0.86999 NaN 1 0 Median 1.0946 0.94167 3.6759 2 0 Median 1.0518 1.0593 NaN 1 0 Median 1.1696 1.0116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24304000 12171000 12133000 6853400 3556200 3297200 9343000 4678900 4664100 1939500 988740 950750 6167900 2946800 3221100 0 0 0 0 0 0 24213 2524 25296 127732;127733;127734;127735;127736 128600;128601;128602;128603;128604;128605;128606;128607 128601 8 MFEELGQR TPVKVRFQEAEERPKMFEELGQRLQHYAKI EAEERPKMFEELGQRLQHYAKIAADFRNKD K M F Q R L 0 1 0 0 0 1 2 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1008.4699 Q92598;A0A0A0MSM0 Q92598 715 722 HSPH1 Heat shock protein 105 kDa yes no 2 0.0052175 77.058 By MS/MS By matching 1 2 1.4165 1.0797 39.402 3 Plateau 1.5619 1.5073 NaN 1 0 Median 0.88894 0.76213 2.078 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14309000 6457800 7851200 7789900 3010000 4780000 6519000 3447800 3071200 0 0 0 0 0 0 0 0 0 0 0 0 24214 3541 25297 127737;127738;127739 128608 128608 1 MFEFQNFER MPEGGGALAEGFQVRMFEFQNFERRFEECI EGFQVRMFEFQNFERRFEECISQSAVKTKF R M F E R R 0 1 1 0 0 1 2 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 9 0 1246.5441 O95140 O95140 335 343 MFN2 Mitofusin-2 yes yes 2 0.0025948 70.919 By MS/MS By matching 2 1 1.2906 1.2766 24.974 3 Median 1.5442 1.5375 26.295 2 0 Median 1.2634 1.1518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3713900 1491900 2222000 3217400 1287700 1929600 496520 204140 292380 0 0 0 0 0 0 0 0 0 0 0 0 24215 1747 25298 127740;127741;127742 128609 128609 1 MFEFYER GAMTPFFWLFEEREKMFEFYERVSGARMHA WLFEEREKMFEFYERVSGARMHAAYIRPGG K M F E R V 0 1 0 0 0 0 2 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 7 0 1020.4375 O75306 O75306 210 216 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2 0.038702 45.718 By MS/MS By matching By matching By matching 1 1 1 1 1.2671 1.182 28.404 4 Median 1.0091 1.005 NaN 1 0 Median 1.6398 1.4428 NaN 1 0 Median 0.78756 0.79261 NaN 1 0 Median 1.5911 1.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7787800 4182800 3604900 3591600 1886800 1704900 560950 182530 378410 3096600 1905900 1190700 538560 207640 330920 0 0 0 0 0 0 24216 1657 25299 127743;127744;127745;127746 128610 128610 1 MFEIDYSR LLLGPTRGLRNATQRMFEIDYSRDSFLKDG LRNATQRMFEIDYSRDSFLKDGQPFRYISG R M F S R D 0 1 0 1 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 8 0 1059.4695 E7EQ29;P16278;F8WF40;C9JF15;C9JWX1 E7EQ29 31 38 GLB1 Beta-galactosidase yes no 2 0.0054254 75.854 By MS/MS By matching 1 1 1.2003 1.1013 31.02 2 Median 0.90699 0.88438 NaN 1 0 Median 1.5883 1.3714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6257400 2808600 3448800 4642900 2226200 2416700 1614500 582380 1032100 0 0 0 0 0 0 0 0 0 0 0 0 24217 874 25300 127747;127748 128611;128612 128612 2 MFEIVFEDPKIPGEK IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK MFEIVFEDPKIPGEKQFAYQNSWGLTTRTI K M F E K Q 0 0 0 1 0 0 3 1 0 2 0 2 1 2 2 0 0 0 0 1 0 0 15 1 1777.8961 P07814 P07814 1251 1265 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 0.031131 18.138 By MS/MS By matching 1 2 0.90465 0.89699 22.879 3 Median 0.90465 0.89699 NaN 1 0 Median 0.82483 0.76252 29.514 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7327400 3612600 3714900 4051500 1941600 2109800 3276000 1670900 1605000 0 0 0 0 0 0 0 0 0 0 0 0 24218 1892 25301 127749;127750;127751 128613;128614 128614 2 MFFEDEKPALLSQIDAEFEK TLLGVMYLYVGPSLRMFFEDEKPALLSQID EKPALLSQIDAEFEKMQGQSPPAPTRGISK R M F E K M 2 0 0 2 0 1 4 0 0 1 2 2 1 3 1 1 0 0 0 0 0 0 20 1 2386.1403 Q14008 Q14008 792 811 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00046044 30.956 By matching By MS/MS By MS/MS 1 1 2 0.85001 0.85275 17.562 4 Median 0.80901 0.84364 NaN 1 0 Median 0.89309 0.86196 NaN 1 0 Median 0.83171 0.95294 28.276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7098000 3504900 3593100 657560 345540 312020 4012200 1976200 2036000 2428300 1183200 1245100 0 0 0 0 0 0 0 0 0 24219 2850 25302 127752;127753;127754;127755 128615;128616;128617;128618 128615 4 MFGGPGTASR ______________________________ SSYRRMFGGPGTASRPSSSRSYVTTSTRTY R M F S R P 1 1 0 0 0 0 0 3 0 0 0 0 1 1 1 1 1 0 0 0 0 0 10 0 979.45455 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 14 23 VIM Vimentin yes no 2 0.00063896 81.972 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 5 0.94115 0.83089 20.796 11 Median 0.83287 0.83089 NaN 1 0 Median 1.1404 0.95981 NaN 1 1 Median 1.0005 1.0268 9.7115 2 0 Median NaN NaN NaN 0 0 Median 1.0087 1.0137 9.7786 2 2 Median 0.82818 0.68925 9.3071 5 0 Median 35459000 18102000 17357000 3143300 1560100 1583200 10159000 4815100 5343800 2163400 1102700 1060600 0 0 0 12577000 6517200 6059800 7416600 4107000 3309600 24220 1907 25303 127756;127757;127758;127759;127760;127761;127762;127763;127764;127765;127766;127767 128619;128620;128621;128622;128623;128624;128625;128626;128627;128628;128629;128630 128620 12 MFGGPGTASRPSSSR ______________________________ MFGGPGTASRPSSSRSYVTTSTRTYSLGSA R M F S R S 1 2 0 0 0 0 0 3 0 0 0 0 1 1 2 4 1 0 0 0 0 0 15 1 1493.7045 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 14 28 VIM Vimentin yes no 3 7.6678E-10 115.12 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 3 4 0.81349 0.80553 40.148 14 Median 0.77934 0.77757 NaN 1 0 Median 1.263 1.139 NaN 1 0 Median 0.79981 0.85244 4.3661 2 0 Median 0.90357 0.74565 64.934 3 1 Median 0.81498 0.89266 35.722 3 2 Median 0.78091 0.68861 10.939 4 0 Median 148220000 81263000 66952000 1070000 625010 444990 7755700 3651400 4104200 3621300 2005300 1616000 6390600 5398400 992150 89653000 47872000 41781000 39724000 21710000 18014000 24221 1907 25304 127768;127769;127770;127771;127772;127773;127774;127775;127776;127777;127778;127779;127780;127781 128631;128632;128633;128634;128635;128636;128637;128638;128639;128640;128641;128642;128643;128644;128645;128646;128647 128643 17 MFGIDRDAIAQAVR VNRVPRSGKPAELLKMFGIDRDAIAQAVRG KMFGIDRDAIAQAVRGLITKA_________ K M F V R G 3 2 0 2 0 1 0 1 0 2 0 0 1 1 0 0 0 0 0 1 0 0 14 1 1561.8035 P29401;A0A0B4J1R6 P29401 604 617 TKT Transketolase yes no 3 5.9258E-05 77.912 By MS/MS 2 0.88344 0.91411 3.261 2 Median 0.88344 0.91411 3.261 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22715000 12416000 10299000 22715000 12416000 10299000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24222 2173 25305;25306 127782;127783 128648;128649 128648 922 2 MFGIPVVVAVNAFK EKGFSNLKKQIENARMFGIPVVVAVNAFKT RMFGIPVVVAVNAFKTDTESELDLISRLSR R M F F K T 2 0 1 0 0 0 0 1 0 1 0 1 1 2 1 0 0 0 0 4 0 0 14 0 1490.8319 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 747 760 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 6.5707E-08 101.9 By MS/MS By MS/MS By matching 3 3 2 0.93936 0.95073 12.027 7 Median 0.93885 0.90719 7.6206 3 0 Median 1.1654 1.0305 11.047 2 0 Median 0.98677 1.0343 15.976 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24754000 12639000 12115000 20028000 10434000 9594100 3414200 1588400 1825800 1311500 616780 694680 0 0 0 0 0 0 0 0 0 24223 1968 25307;25308 127784;127785;127786;127787;127788;127789;127790;127791 128650;128651;128652;128653;128654 128652 749 5 MFGMVLEK GALALQEIFDGIQPKMFGMVLEKIIIPEIQ FDGIQPKMFGMVLEKIIIPEIQKVSGNVEK K M F E K I 0 0 0 0 0 0 1 1 0 0 1 1 2 1 0 0 0 0 0 1 0 0 8 0 953.47145 P55060 P55060 817 824 CSE1L Exportin-2 yes yes 2 0.0052175 77.058 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 1 1 1 1 1.3455 1.1946 29.349 9 Median 1.1012 1.0704 10.554 2 0 Median 1.3455 1.1775 13.112 3 0 Median 1.3264 1.4034 NaN 1 0 Median 1.4487 1.2752 NaN 1 0 Median 2.5315 2.5967 NaN 1 0 Median 1.4572 1.224 NaN 1 0 Median 57126000 24267000 32859000 23482000 11058000 12423000 30330000 12051000 18279000 1845800 682970 1162800 112700 51522 61177 1062300 298880 763410 293040 123270 169770 24224 2493 25309 127792;127793;127794;127795;127796;127797;127798;127799;127800 128655;128656;128657;128658 128655 4 MFIGGLSWDTSK GSKINASKNQQDDGKMFIGGLSWDTSKKDL DGKMFIGGLSWDTSKKDLTEYLSRFGEVVD K M F S K K 0 0 0 1 0 0 0 2 0 1 1 1 1 1 0 2 1 1 0 0 0 0 12 0 1340.6435 A0A087WUK2;O14979 A0A087WUK2 150 161 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 5.4737E-06 98.943 By matching By MS/MS By matching By MS/MS 1 1 1 3 1.0599 1.0412 8.7019 6 Median NaN NaN NaN 0 0 Median 1.3625 1.1736 NaN 1 0 Median 1.0412 1.0024 NaN 1 0 Median 1.4008 1.1811 NaN 1 0 Median 1.079 1.0724 5.745 3 0 Plateau NaN NaN NaN 0 0 Median 42205000 20141000 22064000 0 0 0 2994900 1207400 1787500 14413000 7089100 7324100 1015700 439750 575970 23781000 11405000 12377000 0 0 0 24225 32 25310 127801;127802;127803;127804;127805;127806 128659;128660;128661;128662;128663;128664 128660 6 MFIGGLSWDTSKK GSKINASKNQQDDGKMFIGGLSWDTSKKDL GKMFIGGLSWDTSKKDLTEYLSRFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 1 1 2 1 1 0 2 1 1 0 0 0 0 13 1 1468.7384 A0A087WUK2;O14979 A0A087WUK2 150 162 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2;3 1.459E-06 103.22 By matching By MS/MS By matching By MS/MS By matching 1 4 1 9 3 1.1854 1.2202 11.255 18 Median 1.2222 1.1839 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1239 1.1731 16.786 4 0 Median 1.38 1.2118 NaN 1 0 Median 1.1768 1.2528 10.747 9 2 Median 1.3153 1.1209 9.7436 3 0 Median 204680000 95196000 109490000 1433400 729110 704270 0 0 0 44256000 20804000 23452000 76631 32861 43770 156310000 72492000 83819000 2603700 1137500 1466200 24226 32 25311;25312 127807;127808;127809;127810;127811;127812;127813;127814;127815;127816;127817;127818;127819;127820;127821;127822;127823;127824 128665;128666;128667;128668;128669;128670;128671;128672;128673;128674;128675;128676;128677;128678;128679 128666 12 15 MFIGGLSWDTTK PRHSEAATAQREEWKMFIGGLSWDTTKKDL EWKMFIGGLSWDTTKKDLKDYFSKFGEVVD K M F T K K 0 0 0 1 0 0 0 2 0 1 1 1 1 1 0 1 2 1 0 0 0 0 12 0 1354.6591 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RD83;D6RBQ9 Q14103 99 110 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 2 0.00025058 145.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 7 7 5 4 1.2331 1.1084 17.76 29 Median 1.1392 1.0516 17.414 3 0 Median 1.359 1.1577 3.8279 3 0 Median 1.072 1.0422 24.372 7 1 Median 1.4102 1.2301 18.315 7 0 Median 1.0507 1.1055 11.51 5 0 Median 1.4535 1.2132 15.825 4 0 Median 352640000 164720000 187920000 23293000 10477000 12816000 22770000 9682400 13088000 250140000 118600000 131540000 12425000 5389500 7035300 34764000 16793000 17971000 9243800 3782500 5461300 24227 2854;816 25313;25314 127825;127826;127827;127828;127829;127830;127831;127832;127833;127834;127835;127836;127837;127838;127839;127840;127841;127842;127843;127844;127845;127846;127847;127848;127849;127850;127851;127852;127853 128680;128681;128682;128683;128684;128685;128686;128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700;128701;128702;128703;128704;128705;128706;128707;128708 128691 303 29 MFIGGLSWDTTKK PRHSEAATAQREEWKMFIGGLSWDTTKKDL WKMFIGGLSWDTTKKDLKDYFSKFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 1 1 2 1 1 0 1 2 1 0 0 0 0 13 1 1482.7541 Q14103;H0Y8G5;H0YA96;D6RAF8;D6RF44;D6RD83;D6RBQ9 Q14103 99 111 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 no no 2;3 1.9491E-06 127.42 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 6 1 14 8 12 4 1.1417 1.1543 28.422 42 Median 1.1974 1.1113 15.69 6 0 Median 1.4527 1.319 NaN 1 0 Median 1.0065 1.031 25.905 13 1 Median 1.3925 1.2798 20.259 8 0 Median 1.0561 1.1543 36.266 10 2 Median 1.4023 1.2333 44.76 4 0 Median 509970000 241960000 268010000 87473000 40255000 47218000 1199200 464530 734700 283010000 135410000 147600000 30330000 13539000 16791000 103400000 50468000 52930000 4566100 1824100 2742000 24228 2854;816 25315;25316 127854;127855;127856;127857;127858;127859;127860;127861;127862;127863;127864;127865;127866;127867;127868;127869;127870;127871;127872;127873;127874;127875;127876;127877;127878;127879;127880;127881;127882;127883;127884;127885;127886;127887;127888;127889;127890;127891;127892;127893;127894;127895;127896;127897;127898 128709;128710;128711;128712;128713;128714;128715;128716;128717;128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729;128730;128731;128732;128733;128734;128735;128736;128737;128738;128739;128740;128741;128742;128743;128744;128745;128746;128747;128748 128733 303 40 MFIGGLSWQTTQEGLR QPGLASPDSPHDPCKMFIGGLSWQTTQEGL FIGGLSWQTTQEGLREYFGQFGEVKECLVM K M F L R E 0 1 0 0 0 2 1 3 0 1 2 0 1 1 0 1 2 1 0 0 0 0 16 0 1822.9036 O43347 O43347 22 37 MSI1 RNA-binding protein Musashi homolog 1 yes yes 2 0.0012542 38.634 By MS/MS 2 1.1426 1.3037 13.596 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1426 1.3037 13.596 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3806000 1793600 2012400 0 0 0 0 0 0 3806000 1793600 2012400 0 0 0 0 0 0 0 0 0 24229 1567 25317 127899;127900 128749 128749 1 MFILQSK MTLVDETNMYEGVGRMFILQSKEAIHSQLL NMYEGVGRMFILQSKEAIHSQLLEKQKIAE R M F S K E 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 7 0 865.47316 O60925;E5RGS4 O60925 67 73 PFDN1 Prefoldin subunit 1 yes no 2 0.0061063 94.407 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.2063 1.1241 35.649 6 Median 0.82058 0.73463 60.807 2 0 Median 1.3619 1.119 NaN 1 0 Median 1.1627 1.1671 NaN 1 0 Median 1.2591 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98224 1.2244 NaN 1 0 Median 73251000 31898000 41353000 43378000 19263000 24115000 26510000 11083000 15427000 1498100 713150 784980 1608300 710590 897710 0 0 0 257090 128540 128540 24230 841 25318 127901;127902;127903;127904;127905;127906 128750;128751;128752;128753;128754;128755 128755 6 MFILSDGEGK VCFVGRLEKIHPTGKMFILSDGEGKNGTIE HPTGKMFILSDGEGKNGTIELMEPLDEEIS K M F G K N 0 0 0 1 0 0 1 2 0 1 1 1 1 1 0 1 0 0 0 0 0 0 10 0 1095.527 P35244;B5MC59 P35244 40 49 RPA3 Replication protein A 14 kDa subunit yes no 2 0.00034968 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1.3663 1.1395 14.377 8 Median 1.1654 1.0536 NaN 1 0 Median 1.4213 1.1692 NaN 1 0 Median 1.2404 1.1871 14.729 2 0 Median 1.3554 1.103 0.95298 2 0 Median 1.4781 1.5931 NaN 1 0 Median 1.626 1.3313 NaN 1 0 Median 83595000 35864000 47731000 31611000 14534000 17076000 16344000 6386600 9957600 26426000 11409000 15017000 2964600 1160800 1803700 5844600 2276500 3568200 404510 97160 307350 24231 2236 25319;25320 127907;127908;127909;127910;127911;127912;127913;127914 128756;128757;128758;128759;128760;128761;128762;128763;128764;128765;128766 128761 973 11 MFKPQALLDK LAVSQPITSPEILAKMFKPQALLDKAKINQ EILAKMFKPQALLDKAKINQGWLDSSRSLM K M F D K A 1 0 0 1 0 1 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 10 1 1189.6529 H0YJ34;Q96AC1;A0A0U1RRM8;G3V3J0 H0YJ34 189 198 FERMT2 Fermitin family homolog 2 yes no 2 0.021842 52.579 By MS/MS By matching 1 1 0.78039 0.87138 5.9364 2 Median 0.76683 0.83556 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7942 0.90874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11639000 6088100 5551200 9377900 4757400 4620500 0 0 0 2261400 1330700 930700 0 0 0 0 0 0 0 0 0 24232 1184 25321 127915;127916 128767 128767 1 MFLGDAVDVFETR ENVKVLKEQYLGYRKMFLGDAVDVFETRRA RKMFLGDAVDVFETRRAEAKKWQNTPRVTT K M F T R R 1 1 0 2 0 0 1 1 0 0 1 0 1 2 0 0 1 0 0 2 0 0 13 0 1498.7126 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 370 382 NUPL1 Nucleoporin p58/p45 yes no 2 0.0009775 64.297 By MS/MS By matching By MS/MS By MS/MS 1 1 3 2 1.2338 1.1013 11.502 7 Median 1.3854 1.4036 NaN 1 0 Median 1.2338 1.1065 NaN 1 0 Median 0.98453 1.0389 6.0355 3 0 Median 1.3254 1.1129 5.8932 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8372200 4028900 4343200 924600 395130 529470 241110 109320 131790 5810700 2936000 2874600 1395800 588450 807360 0 0 0 0 0 0 24233 1247 25322;25323 127917;127918;127919;127920;127921;127922;127923 128768;128769;128770;128771;128772;128773;128774;128775;128776;128777 128773 418 10 MFLGDNAHLSIINEYLSQSYQK LGSIAKMLQHAASNKMFLGDNAHLSIINEY HLSIINEYLSQSYQKFRRFFQTACDVPELQ K M F Q K F 1 0 2 1 0 2 1 1 1 2 3 1 1 1 0 3 0 0 2 0 0 0 22 0 2570.2475 P46940;H0YLE8 P46940 1240 1261 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 3.2821E-12 63.184 By MS/MS By MS/MS 1 3 1.1569 1.0687 22.158 4 Median 1.164 1.1247 NaN 1 0 Median 1.1498 1.0155 27.112 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31729000 14248000 17481000 8136800 3545200 4591600 23592000 10703000 12889000 0 0 0 0 0 0 0 0 0 0 0 0 24234 2350 25324 127924;127925;127926;127927 128778;128779;128780 128780 3 MFLITNSPSSFVDK QTRAVLAKLADHGKKMFLITNSPSSFVDKG KMFLITNSPSSFVDKGMSYIVGKDWRDLFD K M F D K G 0 0 1 1 0 0 0 0 0 1 1 1 1 2 1 3 1 0 0 1 0 0 14 0 1584.7858 Q86UY8;H7C193 Q86UY8 295 308 NT5DC3 5-nucleotidase domain-containing protein 3 yes no 2 0.0085401 35.224 By MS/MS By matching 1 1 0.63207 0.62952 60.554 2 Median 0.9873 0.96598 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40465 0.41026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857200 936040 921110 1439500 744840 694670 0 0 0 417640 191200 226450 0 0 0 0 0 0 0 0 0 24235 3282 25325 127928;127929 128781 128781 1 MFLPSLGHR KKAQNIMESFENPFRMFLPSLGHRAPVSQA FENPFRMFLPSLGHRAPVSQAAKFDPSTKI R M F H R A 0 1 0 0 0 0 0 1 1 0 2 0 1 1 1 1 0 0 0 0 0 0 9 0 1056.5539 Q01780 Q01780 694 702 EXOSC10 Exosome component 10 yes yes 2 0.00078048 98.299 By MS/MS 1 1.0485 1.1132 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0485 1.1132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10865000 5444000 5420700 0 0 0 0 0 0 10865000 5444000 5420700 0 0 0 0 0 0 0 0 0 24236 2691 25326 127930 128782 128782 1 MFLQYYLNEQGDR ______________________________ ______________________________ - M F D R V 0 1 1 1 0 2 1 1 0 0 2 0 1 1 0 0 0 0 2 0 0 0 13 0 1675.7664 Q9NPE3;H0YM60 Q9NPE3 1 13 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes no 2 2.2357E-08 145.89 By MS/MS By MS/MS 2 1 1.3174 1.0227 16.065 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1388 1.1533 20.493 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3534 1.0227 NaN 1 0 Median 27426000 12723000 14703000 0 0 0 0 0 0 26233000 12196000 14037000 0 0 0 0 0 0 1193200 527710 665520 24237 4048 25327;25328 127931;127932;127933 128783;128784;128785;128786 128786 1866 4 MFLRGDSVIVVLR KKKSKPVNKDRYISKMFLRGDSVIVVLRNP SKMFLRGDSVIVVLRNPLIAGK________ K M F L R N 0 2 0 1 0 0 0 1 0 1 2 0 1 1 0 1 0 0 0 3 0 0 13 1 1503.8596 P62316;K7EJB5 P62316 99 111 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 3 0.00038179 57.802 By MS/MS 1 1.165 1.3093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.165 1.3093 NaN 1 0 Median NaN NaN NaN 0 0 Median 4417200 2101000 2316200 0 0 0 0 0 0 0 0 0 0 0 0 4417200 2101000 2316200 0 0 0 24238 2586 25329 127934 128787;128788 128787 2 MFLSFPTTK VGGHAAEYGAEALERMFLSFPTTKTYFPHF AEALERMFLSFPTTKTYFPHFDLSHGSAQV R M F T K T 0 0 0 0 0 0 0 0 0 0 1 1 1 2 1 1 2 0 0 0 0 0 9 0 1070.5471 A0A2R8Y7C0;P69905;G3V1N2;CON__P01966 CON__P01966 33 41 HBA1;HBA2 Hemoglobin subunit alpha no no 2 1.8575E-07 131.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 6 2 0.024753 0.020362 164.21 16 Median 0.019277 0.017396 135.83 2 1 Median 0.1415 0.11702 243.2 2 1 Median 0.014322 0.01364 156.11 2 1 Median 0.016312 0.013125 139.01 2 1 Median 0.023354 0.024243 199.72 6 5 Median 0.017758 0.014579 43.156 2 2 Median 567720000 557950000 9777500 127290000 125860000 1429300 8439700 7681700 757960 46482000 45296000 1186200 15143000 14702000 441080 187760000 184580000 3181700 182610000 179830000 2781300 + 24239 738;380 25330;25331 127935;127936;127937;127938;127939;127940;127941;127942;127943;127944;127945;127946;127947;127948;127949;127950;127951 128789;128790;128791;128792;128793;128794;128795;128796;128797;128798;128799;128800;128801;128802;128803;128804 128803 179 16 MFLVNSFLK ______________________________ ______________________________ - M F L K G 0 0 1 0 0 0 0 0 0 0 2 1 1 2 0 1 0 0 0 1 0 0 9 0 1097.5943 A0A0C4DGQ5;P04632;K7EKD8;K7ELJ7;K7EM73;K7ES78;K7EMQ1 A0A0C4DGQ5 1 9 CAPNS1 Calpain small subunit 1 yes no 2 0.0014542 71.379 By MS/MS By matching By matching 3 1 1 1.1775 1.1198 22.601 5 Median 1.2113 1.1276 5.5844 3 0 Plateau NaN NaN NaN 0 0 Median 1.1775 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7374 1.7837 NaN 1 0 Median NaN NaN NaN 0 0 Median 18577000 8215500 10362000 16531000 7402100 9129100 0 0 0 1174100 510980 663140 0 0 0 871970 302400 569570 0 0 0 24240 251 25332 127952;127953;127954;127955;127956 128805;128806 128805 110 2 MFLYADNEDR QEIVGCAHLENYALKMFLYADNEDRAGRFH NYALKMFLYADNEDRAGRFHKNMIKSFYTA K M F D R A 1 1 1 2 0 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 10 0 1272.5445 Q9NP79;A0A087WY55;Q5TGM0 Q9NP79 97 106 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 2 0.0077413 60.973 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.249 1.2434 13.316 4 Median NaN NaN NaN 0 0 Median 1.5508 1.2988 NaN 1 1 Median 1.2214 1.1904 NaN 1 0 Median 1.1611 1.0111 NaN 1 0 Median 1.2772 1.3714 NaN 1 0 Median NaN NaN NaN 0 0 Median 18200000 7533900 10667000 0 0 0 3008500 1240800 1767700 10370000 4601600 5768300 2299000 862120 1436900 2523200 829420 1693700 0 0 0 24241 76 25333 127957;127958;127959;127960 128807;128808 128808 1 MFLYNLTLQR ______________________________ ______________________________ - M F Q R A 0 1 1 0 0 1 0 0 0 0 3 0 1 1 0 0 1 0 1 0 0 0 10 0 1297.6853 Q15393;I3L4G7;H3BMB0 Q15393 1 10 SF3B3 Splicing factor 3B subunit 3 yes no 2 3.1542E-23 155.1 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 2 3 3 2 2 1.0734 1.035 12.481 14 Median 1.1387 1.1293 18.531 3 1 Plateau 1.1927 1.0094 6.4775 2 0 Median 0.9961 1.0324 8.2487 3 1 Median 1.2782 1.117 6.4478 3 0 Plateau 1.0202 1.0166 2.9108 2 0 Median 0.84113 0.7415 NaN 1 0 Median 16358000 7852300 8505700 6320100 3016200 3303800 4053400 2005000 2048300 4196800 2071700 2125100 732030 300900 431130 897180 382160 515020 158590 76287 82306 24242 2946 25334 127961;127962;127963;127964;127965;127966;127967;127968;127969;127970;127971;127972;127973;127974;127975 128809;128810;128811;128812;128813;128814 128814 6 MFMSFLK LFMMEATLNDPQWSRMFMSFLKHKDARPLR LNDPQWSRMFMSFLKHKDARPLRDVLAANP R M F L K H 0 0 0 0 0 0 0 0 0 0 1 1 2 2 0 1 0 0 0 0 0 0 7 0 902.43942 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1568 1574 TRRAP Transformation/transcription domain-associated protein yes no 2 0.026776 52.683 By matching By MS/MS By matching 1 2 1 1.0996 1.0937 12.104 4 Median NaN NaN NaN 0 0 Median 1.5075 1.3456 NaN 1 0 Median 0.96007 1.0412 1.0223 2 0 Median 1.2352 1.1405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8713100 4322900 4390200 0 0 0 285930 105500 180420 8203200 4113500 4089700 224010 103930 120080 0 0 0 0 0 0 24243 991 25335 127976;127977;127978;127979 128815 128815 1 MFPHHSITESVNYDVK VGRRSSLSSRGTPTRMFPHHSITESVNYDV FPHHSITESVNYDVKTFGSSLPVKVMEALT R M F V K T 0 0 1 1 0 0 1 0 2 1 0 1 1 1 1 2 1 0 1 2 0 0 16 0 1902.8934 Q8WUM0 Q8WUM0 67 82 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3;4 1.2867E-10 128.85 By matching By MS/MS By MS/MS 1 4 3 1.1087 1.1107 8.4402 8 Median 1.1838 1.1717 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90969 0.96922 7.3305 4 0 Median 1.2796 1.1141 0.082887 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115800000 56462000 59333000 2943500 1333900 1609500 0 0 0 91713000 45845000 45868000 21139000 9283200 11856000 0 0 0 0 0 0 24244 3492 25336;25337 127980;127981;127982;127983;127984;127985;127986;127987 128816;128817;128818;128819;128820;128821;128822;128823;128824;128825;128826;128827;128828;128829 128818 1746 14 MFQAAGAAQATPSHDAK ______________________________ QAAGAAQATPSHDAKGGGSSTVQRSKHCHT - M F A K G 6 0 0 1 0 2 0 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 17 0 1700.7941 J3KRR0;J3QQM5;Q9BT23 J3KRR0 1 17 LIMD2 LIM domain-containing protein 2 yes no 2 3.979E-18 141.37 By MS/MS By MS/MS By matching 2 3 1 0.71647 0.68157 48.058 6 Median 0.55079 0.51924 35.267 2 2 Median NaN NaN NaN 0 0 Median 0.72701 0.69719 32.593 3 0 Median 1.8928 1.5624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35522000 20276000 15246000 14268000 8373200 5894900 0 0 0 20323000 11493000 8830000 931080 409840 521240 0 0 0 0 0 0 24245 1327 25338;25339 127988;127989;127990;127991;127992;127993 128830;128831;128832;128833;128834;128835 128833 438 6 MFQDIGVSK LKQACGFEYTSKLQRMFQDIGVSKDLNEQF TSKLQRMFQDIGVSKDLNEQFKKHLTNSEP R M F S K D 0 0 0 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 9 0 1023.5059 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 483 491 CUL1 Cullin-1 yes no 2 0.0017805 77.732 By matching By MS/MS By MS/MS 1 1 1 1.3804 1.2218 14.672 3 Median 1.6403 1.5583 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1216 1.2218 NaN 1 0 Median 1.3804 1.197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19791000 8892300 10898000 4266700 1707900 2558800 0 0 0 12826000 6037200 6788500 2698100 1147200 1550900 0 0 0 0 0 0 24246 256 25340 127994;127995;127996 128836;128837;128838;128839 128837 4 MFSDEILLSLTR NHVYRRSLGKYTDFKMFSDEILLSLTRKVL DFKMFSDEILLSLTRKVLLPDLEFYVNLGD K M F T R K 0 1 0 1 0 0 1 0 0 1 3 0 1 1 0 2 1 0 0 0 0 0 12 0 1423.7381 Q7Z4H8 Q7Z4H8 216 227 KDELC2 KDEL motif-containing protein 2 yes yes 2 0.00074852 61.353 By matching By MS/MS By matching 1 1 1 0.96172 0.97404 27.447 3 Median 0.82717 0.83842 NaN 1 0 Median 1.6466 1.4277 NaN 1 0 Median 0.96172 0.97404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5355100 2105900 3249200 995900 443470 552430 4069200 1509000 2560200 290040 153450 136590 0 0 0 0 0 0 0 0 0 24247 3246 25341 127997;127998;127999 128840;128841 128841 2 MFTILER TGFVPPGRPKNWKEKMFTILERTVTTRIEG RPKNWKEKMFTILERTVTTRIEGTQADTRE K M F E R T 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 7 0 908.47897 O60645;D6RB59;H0Y995 O60645 248 254 EXOC3 Exocyst complex component 3 yes no 2 0.053242 38.792 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 1 1.3067 1.1414 37.033 6 Median 0.84778 0.83935 NaN 1 0 Median 1.2378 1.115 NaN 1 0 Median 0.95834 1.0259 NaN 1 0 Median 1.3795 1.1685 NaN 1 0 Median 2.3453 2.4843 NaN 1 0 Median 1.4155 1.2016 NaN 1 0 Median 5751700 2839500 2912200 1816800 1092100 724660 285590 138760 146830 2516500 1216800 1299700 399130 130190 268950 613290 213770 399510 120410 47897 72513 24248 1623 25342 128000;128001;128002;128003;128004;128005 128842 128842 1 MFTQQQPQELAR RRCTVVSVPDSLLWRMFTQQQPQELARDSK LWRMFTQQQPQELARDSKGRFFLDRDGFLF R M F A R D 1 1 0 0 0 4 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 12 0 1475.7191 Q96CX2 Q96CX2 63 74 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 2 2.5018E-08 166.33 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 0.74535 0.73829 63.748 8 Median 0.74447 0.71997 10.556 2 0 Median 1.5577 1.3314 96.424 3 2 Median 0.71606 0.70262 NaN 1 0 Median 1.1248 0.94405 93.813 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64831000 35482000 29349000 47062000 26452000 20610000 7915400 3639400 4276000 8017900 4745300 3272500 1836000 645280 1190700 0 0 0 0 0 0 24249 3623 25343 128006;128007;128008;128009;128010;128011;128012;128013 128843;128844;128845;128846;128847;128848;128849;128850;128851 128850 9 MFTSMDPPPVELIR SKGALNPADITVLFKMFTSMDPPPVELIRV KMFTSMDPPPVELIRVPAFLDLFMQSLFKP K M F I R V 0 1 0 1 0 0 1 0 0 1 1 0 2 1 3 1 1 0 0 1 0 0 14 0 1631.8051 H0UI80;X6RLT1;Q8IXH7 H0UI80 325 338 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.043911 24.855 By MS/MS By matching 1 1 0.54092 0.51372 4.0038 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47907 0.49938 NaN 1 0 Median 0.61075 0.52847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3700400 2460100 1240300 0 0 0 0 0 0 3521500 2334800 1186700 178890 125350 53538 0 0 0 0 0 0 24250 1138 25344 128014;128015 128852 128852 1 MFVGGLSWDTSK GDQINASKNEEDAGKMFVGGLSWDTSKKDL AGKMFVGGLSWDTSKKDLKDYFTKFGEVVD K M F S K K 0 0 0 1 0 0 0 2 0 0 1 1 1 1 0 2 1 1 0 1 0 0 12 0 1326.6278 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 72 83 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 5.2105E-06 121.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 4 5 5 2 1.1782 1.0728 13.53 18 Median 1.2935 1.1952 NaN 1 0 Median 1.2404 1.0618 NaN 1 0 Median 1.1401 1.0979 7.5072 4 0 Median 1.399 1.1758 9.0265 5 0 Median 1.0146 1.0189 12.19 5 0 Median 1.102 0.88812 20.441 2 0 Median 221480000 105350000 116130000 16726000 7604700 9121500 5017300 2303200 2714100 113350000 53276000 60075000 9019600 3789900 5229700 75864000 37713000 38151000 1504400 666740 837670 24251 805 25345;25346 128016;128017;128018;128019;128020;128021;128022;128023;128024;128025;128026;128027;128028;128029;128030;128031;128032;128033 128853;128854;128855;128856;128857;128858;128859;128860;128861;128862;128863;128864;128865;128866;128867;128868;128869;128870;128871;128872;128873 128869 301 21 MFVGGLSWDTSKK GDQINASKNEEDAGKMFVGGLSWDTSKKDL GKMFVGGLSWDTSKKDLKDYFTKFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 0 1 2 1 1 0 2 1 1 0 1 0 0 13 1 1454.7228 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 72 84 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2;3 8.1513E-07 130.94 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 4 8 5 16 10 1.0854 1.1132 16.344 48 Median 1.2296 1.1495 16.726 5 0 Median 1.2625 1.1496 23.954 4 0 Median 1.0232 1.1034 4.5115 8 0 Median 1.3185 1.1741 6.5616 5 0 Median 1.0452 1.1198 16.058 16 1 Median 1.2339 1.0723 23.229 10 0 Median 546320000 256080000 290240000 39867000 18153000 21714000 3479300 1734200 1745200 178400000 85549000 92853000 9145000 4050000 5095100 290930000 135680000 155250000 24495000 10914000 13581000 24252 805 25347;25348 128034;128035;128036;128037;128038;128039;128040;128041;128042;128043;128044;128045;128046;128047;128048;128049;128050;128051;128052;128053;128054;128055;128056;128057;128058;128059;128060;128061;128062;128063;128064;128065;128066;128067;128068;128069;128070;128071;128072;128073;128074;128075;128076;128077;128078;128079;128080;128081 128874;128875;128876;128877;128878;128879;128880;128881;128882;128883;128884;128885;128886;128887;128888;128889;128890;128891;128892;128893;128894;128895;128896;128897;128898;128899;128900;128901;128902;128903;128904;128905;128906;128907;128908;128909;128910;128911;128912 128889 301 39 MFVGQIPR GALDHSDQPDPDAIKMFVGQIPRSWSEKEL PDPDAIKMFVGQIPRSWSEKELKELFEPYG K M F P R S 0 1 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 1 0 0 8 0 946.50586 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9;V9GY47;A0A0J9YXK1 E9PC62 49 56 CELF2 CUGBP Elav-like family member 2 yes no 2 0.0032511 99.919 By MS/MS 1 0.74672 0.76023 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74672 0.76023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7109000 4151500 2957500 0 0 0 0 0 0 7109000 4151500 2957500 0 0 0 0 0 0 0 0 0 24253 294 25349 128082 128913 128913 1 MFVGQVPR GTLDHPDQPDLDAIKMFVGQVPRTWSEKDL PDLDAIKMFVGQVPRTWSEKDLRELFEQYG K M F P R T 0 1 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 2 0 0 8 0 932.49021 G5EA30;Q92879;E9PSH0;E9PQK4;E9PKU1;E9PKA1;F5H4Y5;F5H0D8 G5EA30 45 52 CELF1 CUGBP Elav-like family member 1 yes no 2 0.0009774 149.06 By matching By MS/MS By MS/MS By MS/MS 1 4 4 1 1.1425 1.1366 45.906 9 Median 1.1425 1.1366 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2455 1.2333 25.781 3 1 Median 1.094 0.9364 58.578 4 0 Median 1.4054 1.4106 NaN 1 0 Median NaN NaN NaN 0 0 Median 102400000 48178000 54218000 3695800 1857500 1838400 0 0 0 68236000 31910000 36326000 25064000 12119000 12945000 5400700 2291300 3109300 0 0 0 24254 1133 25350;25351 128083;128084;128085;128086;128087;128088;128089;128090;128091;128092 128914;128915;128916;128917;128918;128919;128920;128921;128922;128923;128924;128925 128914 377 12 MFVLDEADEMLSR FDMLNRRYLSPKYIKMFVLDEADEMLSRGF IKMFVLDEADEMLSRGFKDQIYDIFQKLNS K M F S R G 1 1 0 2 0 0 2 0 0 0 2 0 2 1 0 1 0 0 0 1 0 0 13 0 1554.7058 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3KTN0;J3QR64;J3QLN6;Q14240;E7EQG2 P60842 178 190 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 6.7811E-07 166.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 14 13 6 3 14 1.1115 1.1134 25.113 63 Plateau 1.1535 1.139 6.9089 14 1 Median 1.033 0.89164 9.0339 14 2 Median 1.1403 1.1134 10.525 12 0 Median 1.0884 0.94561 13.067 6 0 Median 2.3282 2.3487 7.9994 3 0 Median 1.0871 0.88663 22.373 14 0 Median 559200000 262090000 297110000 87229000 38993000 48237000 235190000 117890000 117300000 214820000 95489000 119330000 7242200 3531100 3711100 4276700 1249300 3027400 10432000 4933900 5498300 24255 2529;2867 25352;25353;25354 128093;128094;128095;128096;128097;128098;128099;128100;128101;128102;128103;128104;128105;128106;128107;128108;128109;128110;128111;128112;128113;128114;128115;128116;128117;128118;128119;128120;128121;128122;128123;128124;128125;128126;128127;128128;128129;128130;128131;128132;128133;128134;128135;128136;128137;128138;128139;128140;128141;128142;128143;128144;128145;128146;128147;128148;128149;128150;128151;128152;128153;128154;128155;128156 128926;128927;128928;128929;128930;128931;128932;128933;128934;128935;128936;128937;128938;128939;128940;128941;128942;128943;128944;128945;128946;128947;128948;128949;128950;128951;128952;128953;128954;128955;128956;128957;128958;128959;128960;128961;128962;128963;128964;128965;128966;128967;128968;128969;128970;128971;128972;128973;128974;128975;128976;128977;128978;128979;128980;128981;128982;128983;128984 128970 1211;1212 59 MFYGNSDDIGVFLSK ISDSDKRKHFMLSVKMFYGNSDDIGVFLSK MFYGNSDDIGVFLSKRIKVISKPSKKKQSL K M F S K R 0 0 1 2 0 0 0 2 0 1 1 1 1 2 0 2 0 0 1 1 0 0 15 0 1691.7865 Q06330;D6R927;D6RB37;D6RBQ8;D6R946;D6RA45;D6RCM1 Q06330 145 159 RBPJ Recombining binding protein suppressor of hairless yes no 2 0.0071352 33.409 By MS/MS By matching 1 1 0.6792 0.62417 78.053 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1002 1.0839 NaN 1 0 Median 0.41932 0.35943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21154000 8717600 12436000 0 0 0 0 0 0 7914600 3463000 4451600 13239000 5254600 7984600 0 0 0 0 0 0 24256 2725 25355 128157;128158 128985;128986 128985 2 MFYHISLEHEILLHPR ______________________________ FYHISLEHEILLHPRYFGPNLLNTVKQKLF - M F P R Y 0 1 0 0 0 0 2 0 3 2 3 0 1 1 1 1 0 0 1 0 0 0 16 0 2034.0509 P62487;E9PIU7;E9PKH3 P62487 1 16 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes no 4 0.0057505 25.59 By MS/MS 1 0.93374 0.98791 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93374 0.98791 NaN 1 0 Median NaN NaN NaN 0 0 Median 3222400 1027600 2194800 0 0 0 0 0 0 0 0 0 0 0 0 3222400 1027600 2194800 0 0 0 24257 2590 25356 128159 128987 128987 1 MGAGIAVLFK PKTDSLAHCISEDCRMGAGIAVLFKKKFGG SEDCRMGAGIAVLFKKKFGGVQELLNQQKK R M G F K K 2 0 0 0 0 0 0 2 0 1 1 1 1 1 0 0 0 0 0 1 0 0 10 0 1005.5681 C9JNE2;Q9Y530;C9J5P1;C9JXC3;H7C5Q1;C9JA90;C9IZY1 C9JNE2 40 49 OARD1 O-acetyl-ADP-ribose deacetylase 1 yes no 2 0.031122 43.246 By matching By MS/MS By matching 1 2 1 1.2656 1.1702 19.967 4 Median NaN NaN NaN 0 0 Median 1.5029 1.3052 NaN 1 0 Median 0.97652 0.95497 13.306 2 1 Median 1.6603 1.3227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7136000 3865800 3270200 0 0 0 82799 34006 48793 6988900 3810100 3178800 64259 21651 42608 0 0 0 0 0 0 24258 711 25357;25358 128160;128161;128162;128163 128988;128989 128988 251 2 MGAGLGHGMDR MGPGIDRLGGAGMERMGAGLGHGMDRVGSE GMERMGAGLGHGMDRVGSEIERMGLVMDRM R M G D R V 1 1 0 1 0 0 0 4 1 0 1 0 2 0 0 0 0 0 0 0 0 0 11 0 1100.4855 A0A087X0X3;P52272;M0R2T0;M0QZM1 A0A087X0X3 419 429 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.000114 121.64 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 4 3 1.0789 0.94377 18.208 15 Median 1.3837 1.3653 NaN 1 0 Median 1.0915 0.94377 7.924 3 0 Median 1.0143 1.0215 24.353 2 0 Median 1.036 0.89771 2.7749 2 0 Median 0.81246 0.85674 9.5372 4 0 Median 1.4863 1.2059 17.006 3 0 Median 73242000 38079000 35163000 2170100 937340 1232800 13857000 6659400 7197800 4444000 2418100 2025800 1603200 703810 899350 45282000 24858000 20424000 5885100 2502400 3382700 24259 116;1423 25359 128164;128165;128166;128167;128168;128169;128170;128171;128172;128173;128174;128175;128176;128177;128178 128990;128991;128992;128993;128994;128995;128996;128997;128998;128999;129000;129001;129002;129003;129004 128995 15 MGAGMGFGLER RMGQTMERIGSGVERMGAGMGFGLERMAAP GVERMGAGMGFGLERMAAPIDRVGQTIERM R M G E R M 1 1 0 0 0 0 1 4 0 0 1 0 2 1 0 0 0 0 0 0 0 0 11 0 1124.5107 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 486 496 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 2.4863E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 6 6 12 12 1.1492 1.079 24.151 44 Median 1.3359 1.2632 8.3805 3 0 Median 1.0762 0.93135 19.55 5 0 Median 0.93641 0.9436 29.433 6 0 Median 1.3907 1.2006 20.448 6 0 Median 0.87358 0.88578 21.206 12 4 Median 1.432 1.1722 24.372 12 0 Median 744960000 379400000 365560000 46382000 19224000 27158000 21613000 10951000 10662000 194670000 103490000 91178000 6573400 2379300 4194200 422460000 221240000 201220000 53268000 22115000 31153000 24260 116;1423 25360;25361;25362 128179;128180;128181;128182;128183;128184;128185;128186;128187;128188;128189;128190;128191;128192;128193;128194;128195;128196;128197;128198;128199;128200;128201;128202;128203;128204;128205;128206;128207;128208;128209;128210;128211;128212;128213;128214;128215;128216;128217;128218;128219;128220;128221;128222 129005;129006;129007;129008;129009;129010;129011;129012;129013;129014;129015;129016;129017;129018;129019;129020;129021;129022;129023;129024;129025;129026;129027;129028;129029;129030;129031;129032;129033;129034;129035;129036;129037;129038;129039;129040;129041;129042;129043 129014 47;48 39 MGANNLER RMGPVMDRMATGLERMGANNLERMGLERMG MATGLERMGANNLERMGLERMGANSLERMG R M G E R M 1 1 2 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 903.42325 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 558 565 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0026982 111.82 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 3 1.1144 1.037 21.215 13 Median 1.6372 1.6201 NaN 1 0 Median 1.0949 0.94728 9.8756 2 1 Median 1.0669 0.99996 23.879 3 1 Median NaN NaN NaN 0 0 Median 0.9402 0.96526 18.037 4 0 Median 1.3911 1.1344 12.613 3 0 Median 65028000 32082000 32946000 1929500 683890 1245600 14112000 6805200 7307300 9114100 4623100 4491000 0 0 0 33214000 17234000 15980000 6658300 2736000 3922300 24261 116;1423 25363 128223;128224;128225;128226;128227;128228;128229;128230;128231;128232;128233;128234;128235;128236 129044;129045;129046;129047;129048;129049;129050;129051;129052;129053;129054;129055;129056;129057 129054 14 MGANSLER ERMGANNLERMGLERMGANSLERMGLERMG ERMGLERMGANSLERMGLERMGANSLERMG R M G E R M 1 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 8 0 876.41235 A0A087X0X3;P52272;M0R2I7;M0QY96;M0QZM1 A0A087X0X3 571 578 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0022672 139.31 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 2 3 5 6 1.1442 1.0377 20.177 19 Median 1.5764 1.5491 24.196 2 0 Median 0.93042 0.82286 NaN 1 0 Median 0.93228 0.90923 14.146 2 0 Median 1.1442 0.93783 11.566 3 0 Median 0.96877 1.033 10.333 5 0 Median 1.3988 1.1081 12.557 6 0 Median 67611000 32133000 35478000 6423700 2657300 3766400 534500 296840 237660 21181000 11014000 10167000 728780 298650 430120 19793000 10312000 9480900 18950000 7554100 11396000 24262 116;1423 25364;25365 128237;128238;128239;128240;128241;128242;128243;128244;128245;128246;128247;128248;128249;128250;128251;128252;128253;128254;128255 129058;129059;129060;129061;129062;129063;129064;129065;129066;129067;129068;129069;129070;129071;129072 129068 49 15 MGAVFMDAPVSGGVGAAR IDPAVSKELAKEVEKMGAVFMDAPVSGGVG VFMDAPVSGGVGAARSGNLTFMVGGVEDEF K M G A R S 4 1 0 1 0 0 0 4 0 0 0 0 2 1 1 1 0 0 0 3 0 0 18 0 1691.8123 P31937;H7BZL2 P31937 150 167 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes no 2 1.0331E-12 127.17 By MS/MS By matching 3 2 1.0332 0.8654 60.977 5 Median 0.73156 0.68315 85.556 3 1 Median 1.0337 0.87253 1.1598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94784000 47136000 47648000 90778000 45345000 45434000 4005500 1791400 2214000 0 0 0 0 0 0 0 0 0 0 0 0 24263 2206 25366;25367 128256;128257;128258;128259;128260 129073;129074;129075;129076;129077 129077 938;939 5 MGAYHTIELEPNR LRVKGTNIQENEYVKMGAYHTIELEPNRQF VKMGAYHTIELEPNRQFTLAKKQWDSVVLE K M G N R Q 1 1 1 0 0 0 2 1 1 1 1 0 1 0 1 0 1 0 1 0 0 0 13 0 1529.7297 Q9BRX2 Q9BRX2 96 108 PELO Protein pelota homolog yes yes 3 0.00015395 70.412 By matching By MS/MS 1 1 0.92179 0.8544 11.428 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92793 0.92631 NaN 1 0 Median 0.91569 0.78807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9854900 4271200 5583700 0 0 0 0 0 0 6387900 2619600 3768300 3466900 1651600 1815300 0 0 0 0 0 0 24264 3805 25368 128261;128262 129078;129079 129079 2 MGDEGGESELLGEDLPLEPSVTK SMLVISGGEGYIDFRMGDEGGESELLGEDL ELLGEDLPLEPSVTKAERSHLIVWQVMYGN R M G T K A 0 0 0 2 0 0 5 4 0 0 4 1 1 0 2 2 1 0 0 1 0 0 23 0 2401.1207 A0A087X2D8;O60271 A0A087X2D8 1274 1296 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 0.0019665 26.729 By MS/MS By matching 3 1 0.90889 0.85372 16.338 4 Median 0.96347 0.95668 20.01 3 0 Plateau 1.0028 0.89101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9517900 4430700 5087200 9066100 4229000 4837000 451880 201660 250220 0 0 0 0 0 0 0 0 0 0 0 0 24265 134 25369 128263;128264;128265;128266 129080;129081 129080 2 MGDHLTNLHR LETHFLDEEVKLIKKMGDHLTNLHRLGGPE KLIKKMGDHLTNLHRLGGPEAGLGEYLFER K M G H R L 0 1 1 1 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1192.5771 P02792 P02792 145 154 FTL Ferritin light chain yes yes 2;3 0.0050445 51.066 By MS/MS By MS/MS 1 2 0.46052 0.38221 NaN 1 Median NaN NaN NaN 0 0 Median 0.46052 0.38221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5711600 1618700 4092900 947680 0 947680 4763900 1618700 3145200 0 0 0 0 0 0 0 0 0 0 0 0 24266 1837 25370 128267;128268;128269 129082;129083;129084;129085 129084 4 MGEAIETTQQLYPSLLER IKNRQRIQKLVLAGRMGEAIETTQQLYPSL AIETTQQLYPSLLERNPNLLFTLKVRQFIE R M G E R N 1 1 0 0 0 2 3 1 0 1 3 0 1 0 1 1 2 0 1 0 0 0 18 0 2078.0354 Q96S59 Q96S59 419 436 RANBP9 Ran-binding protein 9 yes yes 2 0.0039894 28.806 By MS/MS 1 0.85626 0.85175 NaN 1 Median 0.85626 0.85175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 978390 518970 459420 978390 518970 459420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24267 3731 25371 128270 129086;129087 129086 2 MGESDDSILR NGQFKTYAICGAIRRMGESDDSILRLAKAD GAIRRMGESDDSILRLAKADGIVSK_____ R M G L R L 0 1 0 2 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 10 0 1121.5023 Q8WVC2;P63220 Q8WVC2 62 71 RPS21 40S ribosomal protein S21 yes no 2 0.00046439 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 4 4 1 1.2277 1.0488 17.804 14 Median 1.1604 1.1288 8.3238 2 0 Median 1.2503 1.0333 6.0164 4 0 Median 1.211 1.2187 9.7043 4 0 Median 1.2587 0.943 6.0927 3 1 Median NaN NaN NaN 0 0 Median 0.83311 0.64771 NaN 1 0 Median 48506000 21233000 27273000 14880000 6924800 7955000 18544000 8086800 10458000 12263000 5012200 7251100 2612100 1121500 1490600 0 0 0 206430 87698 118730 24268 2623 25372;25373 128271;128272;128273;128274;128275;128276;128277;128278;128279;128280;128281;128282;128283;128284;128285 129088;129089;129090;129091;129092;129093;129094;129095;129096;129097;129098;129099;129100;129101 129098 1285 14 MGFNIGVR KDYENDEDVNKQLDKMGFNIGVRLIEDFLA VNKQLDKMGFNIGVRLIEDFLARSNVGRCH K M G V R L 0 1 1 0 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 1 0 0 8 0 892.45891 O43617;A6NKE1 O43617 47 54 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 2 0.0025123 107.74 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.333 1.1864 18.076 6 Median 1.3096 1.2508 NaN 1 0 Median 1.2455 1.0333 12.062 2 0 Median 1.4528 1.4229 8.8581 2 0 Median 1.2033 0.98594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42784000 18551000 24234000 29898000 13061000 16837000 8419200 3704400 4714800 4110300 1631100 2479200 357360 154610 202750 0 0 0 0 0 0 24269 1578 25374;25375 128286;128287;128288;128289;128290;128291 129102;129103;129104;129105;129106 129102 509 5 MGFTEVTPVTGASLR AALRVLIGENEKAERMGFTEVTPVTGASLR MGFTEVTPVTGASLRRTMLLLSRSPEAQPK R M G L R R 1 1 0 0 0 0 1 2 0 0 1 0 1 1 1 1 3 0 0 2 0 0 15 0 1564.7919 P55265 P55265 802 816 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 9.0839E-11 168.3 By matching By MS/MS By matching By MS/MS 1 1 2 4 0.89026 0.89574 8.9201 8 Median NaN NaN NaN 0 0 Median 1.0854 0.93795 NaN 1 0 Median 0.80023 0.84771 NaN 1 0 Median 1.1378 0.97053 8.9093 2 0 Median 0.85055 0.85971 8.2116 4 0 Median NaN NaN NaN 0 0 Median 75428000 40430000 34998000 0 0 0 1480400 737910 742540 18883000 11036000 7847000 2193800 1001200 1192700 52871000 27655000 25216000 0 0 0 24270 2498 25376;25377 128292;128293;128294;128295;128296;128297;128298;128299 129107;129108;129109;129110;129111;129112;129113;129114 129112 1187 8 MGFTEVTPVTGASLRR AALRVLIGENEKAERMGFTEVTPVTGASLR GFTEVTPVTGASLRRTMLLLSRSPEAQPKT R M G R R T 1 2 0 0 0 0 1 2 0 0 1 0 1 1 1 1 3 0 0 2 0 0 16 1 1720.893 P55265 P55265 802 817 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2;3 1.8229E-07 84.17 By MS/MS By matching 3 1 0.93748 0.94573 15.747 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93392 1.0147 19.188 3 1 Median 1.045 0.88143 NaN 1 0 Median 30556000 14976000 15580000 0 0 0 0 0 0 0 0 0 0 0 0 30396000 14902000 15494000 159870 74370 85505 24271 2498 25378 128300;128301;128302;128303 129115;129116;129117;129118;129119 129119 5 MGGDIANR QEQTIAEDLVVTKYKMGGDIANRVLRSLVE LVVTKYKMGGDIANRVLRSLVEASSSGVSV K M G N R V 1 1 1 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 8 0 832.38614 Q9UQ80;F8VR77 Q9UQ80 23 30 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0035134 91.626 By matching By MS/MS By MS/MS By matching 2 2 2 1 1.0829 1.0155 9.1755 7 Median 1.111 1.1076 4.1069 2 0 Median 1.0926 0.93855 11.148 2 0 Median 0.99147 1.0033 6.9487 2 0 Median 1.088 0.94896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18551000 8823300 9727800 1717500 875790 841690 11114000 5214000 5900400 4859900 2339400 2520500 859320 394160 465160 0 0 0 0 0 0 24272 4360 25379 128304;128305;128306;128307;128308;128309;128310 129120;129121;129122;129123;129124 129122 5 MGGEAPELALDPVPQDASTK GALLLQGFIQDRAGRMGGEAPELALDPVPQ PELALDPVPQDASTKKLSECLKRIGDELDS R M G T K K 3 0 0 2 0 1 2 2 0 0 2 1 1 0 3 1 1 0 0 1 0 0 20 0 2024.9725 Q07812 Q07812 38 57 BAX Apoptosis regulator BAX yes yes 2 1.2851E-05 48.112 By MS/MS By MS/MS 1 1 0.61913 0.55969 17.711 2 Median 0.52358 0.49381 NaN 1 0 Median 0.73212 0.63437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16808000 10455000 6353200 15217000 9624100 5592900 1590900 830610 760290 0 0 0 0 0 0 0 0 0 0 0 0 24273 2732 25380 128311;128312 129125;129126;129127;129128;129129 129125 5 MGGEAPELALDPVPQDASTKK GALLLQGFIQDRAGRMGGEAPELALDPVPQ ELALDPVPQDASTKKLSECLKRIGDELDSN R M G K K L 3 0 0 2 0 1 2 2 0 0 2 2 1 0 3 1 1 0 0 1 0 0 21 1 2153.0674 Q07812 Q07812 38 58 BAX Apoptosis regulator BAX yes yes 3 0.0002647 29.476 By MS/MS By matching 1 1 0.70114 0.65897 7.3443 2 Median 0.62608 0.62562 NaN 1 0 Median 0.78519 0.69409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9930000 6190800 3739200 8985000 5747600 3237400 945070 443220 501840 0 0 0 0 0 0 0 0 0 0 0 0 24274 2732 25381 128313;128314 129130;129131 129131 2 MGGEEAEIR HVALLSVFQAWDDARMGGEEAEIRFCEHKR AWDDARMGGEEAEIRFCEHKRLNMATLRMT R M G I R F 1 1 0 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 990.44404 Q08211 Q08211 930 938 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00014387 144.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 5 4 1.2337 1.1946 17.596 19 Median 1.4001 1.3836 7.9888 2 0 Median 1.4034 1.158 14.217 3 0 Median 1.1034 1.1946 2.7788 3 0 Median 1.5699 1.3453 2.6554 2 0 Median 1.1643 1.1761 8.226 5 1 Median 1.0725 0.90519 22.637 4 0 Median 117570000 51057000 66515000 5298200 2062700 3235500 46313000 19164000 27149000 19750000 9120500 10629000 3109600 1176600 1933000 38288000 17409000 20879000 4813100 2124100 2688900 24275 2736 25382;25383 128315;128316;128317;128318;128319;128320;128321;128322;128323;128324;128325;128326;128327;128328;128329;128330;128331;128332;128333 129132;129133;129134;129135;129136;129137;129138;129139;129140;129141;129142;129143;129144;129145;129146;129147;129148;129149;129150;129151;129152;129153 129137 1423 22 MGGEEKPIGAGEEK ______________________________ KMGGEEKPIGAGEEKQKEGGKKKNKEGSGD K M G E K Q 1 0 0 0 0 0 4 4 0 1 0 2 1 0 1 0 0 0 0 0 0 0 14 1 1430.6711 P26639;D6RCA5;D6R9F8;D6RDJ6;D6RJ97;D6RHV7;D6RCS6 P26639 13 26 TARS Threonine--tRNA ligase, cytoplasmic yes no 2;3 0.00063806 81.017 By matching By MS/MS 2 2 0.99967 1 12.408 4 Median 0.85813 0.88863 8.271 2 0 Median 1.118 1.0817 2.6623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9817300 4522600 5294700 3243600 1618000 1625600 6573700 2904600 3669100 0 0 0 0 0 0 0 0 0 0 0 0 24276 2147 25384 128334;128335;128336;128337 129154;129155;129156 129154 3 MGGFGSIIQLYPGGGPVR METCAGLVLGAMMERMGGFGSIIQLYPGGG FGSIIQLYPGGGPVRAATACFGFPKSFLSG R M G V R A 0 1 0 0 0 1 0 6 0 2 1 0 1 1 2 1 0 0 1 1 0 0 18 0 1804.9294 Q9UJA5 Q9UJA5 221 238 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 5.3399E-06 69.01 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.85621 0.89034 19.612 5 Median 0.93473 0.93777 NaN 1 0 Median 0.74766 0.65357 12.012 2 0 Median 0.85621 0.92476 NaN 1 0 Median 1.0206 0.89034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4856900 2371200 2485700 2444400 1174000 1270400 1486400 827550 658880 840530 328080 512440 85558 41621 43937 0 0 0 0 0 0 24277 4294 25385 128338;128339;128340;128341;128342 129157;129158;129159 129158 3 MGGGGAMNMGDPYGSGGQK YSRMGYMDPRERDMRMGGGGAMNMGDPYGS GAMNMGDPYGSGGQKFPPLGGGGGIGYEAN R M G Q K F 1 0 1 1 0 1 0 8 0 0 0 1 3 0 1 1 0 0 1 0 0 0 19 0 1770.7124 P23246;H0Y9K7;H0Y9U2 P23246 612 630 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 1.2129E-18 130.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 5 3 1 1.0136 0.97176 15.067 17 Median NaN NaN NaN 0 0 Median 1.0136 0.91406 11.815 3 0 Median 0.88021 0.95328 4.7809 5 0 Median 1.248 1.0799 18.975 5 0 Median 0.97712 0.99116 10.047 3 0 Median 1.1664 0.95923 NaN 1 0 Median 377580000 189410000 188170000 0 0 0 18201000 8561600 9639600 242160000 126940000 115220000 76974000 33934000 43039000 36602000 18354000 18249000 3647900 1623100 2024800 24278 2107 25386;25387 128343;128344;128345;128346;128347;128348;128349;128350;128351;128352;128353;128354;128355;128356;128357;128358;128359 129160;129161;129162;129163;129164;129165;129166;129167;129168;129169;129170;129171;129172;129173;129174;129175;129176;129177;129178;129179;129180;129181;129182;129183;129184 129173 870;871;872 25 MGGGSIEVSVPR DQADFRGVRGDFNSRMGGGSIEVSVPRFAV NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK R M G P R F 0 1 0 0 0 0 1 3 0 1 0 0 1 0 1 2 0 0 0 2 0 0 12 0 1187.5969 Q96I24 Q96I24 251 262 FUBP3 Far upstream element-binding protein 3 yes yes 2 8.9255E-18 140.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 5 2 1.0579 0.9187 38.309 16 Median 1.7581 1.7177 121.48 2 0 Median NaN NaN NaN 0 0 Median 0.8991 0.91801 1.7413 3 0 Median 1.1117 0.93323 7.7819 4 1 Median 0.98205 0.96652 14.078 5 4 Median 1.0707 0.9196 1.7603 2 0 Median 212090000 103770000 108330000 27238000 10554000 16684000 0 0 0 91676000 47532000 44144000 26774000 12423000 14350000 49571000 25107000 24464000 16833000 8148700 8683900 24279 3673 25388;25389 128360;128361;128362;128363;128364;128365;128366;128367;128368;128369;128370;128371;128372;128373;128374;128375;128376 129185;129186;129187;129188;129189;129190;129191;129192;129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204;129205 129202 1804 21 MGGMEGPFGGGMENMGR PAGMGMEGIGFGINKMGGMEGPFGGGMENM GMEGPFGGGMENMGRFGSGMNMGRINEILS K M G G R F 0 1 1 0 0 0 2 7 0 0 0 0 4 1 1 0 0 0 0 0 0 0 17 0 1713.6732 A0A087X0X3;P52272;M0QYL3;M0QZM1 A0A087X0X3 346 362 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 1.8794E-24 190.15 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 3 5 5 8 5 0.87588 0.8831 24.592 29 Median 1.0947 1.0834 6.4572 3 0 Median 0.87588 0.78907 25.229 3 0 Median 0.75103 0.77149 24.733 5 0 Median 1.0931 0.92063 24.835 5 0 Median 0.67923 0.71169 9.7089 8 0 Median 1.2985 1.0673 23.156 5 0 Median 125190000 73726000 51465000 13124000 6552200 6572300 1905300 1152800 752470 34377000 22417000 11960000 1008100 446000 562060 72945000 42321000 30624000 1831400 836780 994660 24280 116;1423 25390;25391;25392 128377;128378;128379;128380;128381;128382;128383;128384;128385;128386;128387;128388;128389;128390;128391;128392;128393;128394;128395;128396;128397;128398;128399;128400;128401;128402;128403;128404;128405 129206;129207;129208;129209;129210;129211;129212;129213;129214;129215;129216;129217;129218;129219;129220;129221;129222;129223;129224;129225;129226;129227;129228;129229;129230;129231;129232;129233;129234;129235;129236;129237;129238;129239;129240;129241;129242;129243;129244 129222 50;51 39 MGGMVSFR SDVLLDNSFTPPCQRMGGMVSFRTFEDFVR FTPPCQRMGGMVSFRTFEDFVRIFDEVMGC R M G F R T 0 1 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 1 0 0 8 0 883.40443 Q13085 Q13085 1233 1240 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.031031 38.792 By matching By MS/MS 1 1 1.2599 1.1521 9.243 2 Median 1.0707 1.0792 NaN 1 0 Median 1.4826 1.2299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5036000 2416700 2619300 3692100 1836500 1855600 1343900 580260 763680 0 0 0 0 0 0 0 0 0 0 0 0 24281 2784 25393 128406;128407 129245 129245 1 MGGTDAVITNVSGSVSSAGRPASASPAPNANADGTK LDWAIPQQRSSSCPRMGGTDAVITNVSGSV ASASPAPNANADGTKTSRSSVETTPSVIQH R M G T K T 7 1 3 2 0 0 0 5 0 1 0 1 1 0 3 6 3 0 0 3 0 0 36 1 3314.5797 Q6W2J9;H7BYY2 Q6W2J9 547 582 BCOR BCL-6 corepressor yes no 3 0.030337 12.41 By MS/MS 1 0.45465 0.54519 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45465 0.54519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6155900 3977900 2178000 0 0 0 0 0 0 6155900 3977900 2178000 0 0 0 0 0 0 0 0 0 24282 3191 25394 128408 129246 129246 1 MGGYLFSGSQAPQLSPALLR HLLRRYMASRLHSLRMGGYLFSGSQAPQLS FSGSQAPQLSPALLRALGQKCPNLKRLCLH R M G L R A 2 1 0 0 0 2 0 3 0 0 4 0 1 1 2 3 0 0 1 0 0 0 20 0 2092.0775 Q9NXK8;K7EPN7 Q9NXK8 76 95 FBXL12 F-box/LRR-repeat protein 12 yes no 2 0.040713 20.381 By MS/MS By matching 1 1 0.93926 0.85979 9.9511 2 Median 0.8258 0.80138 NaN 1 0 Median 1.0683 0.92247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1562000 819070 742890 1263300 643200 620100 298670 175880 122790 0 0 0 0 0 0 0 0 0 0 0 0 24283 4167 25395 128409;128410 129247 129247 1 MGHAGAIIAGGK VVSFIAGLTAPPGRRMGHAGAIIAGGKGGA GRRMGHAGAIIAGGKGGAKEKISALQSAGV R M G G K G 3 0 0 0 0 0 0 4 1 2 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1081.5702 P53597 P53597 297 308 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 2 0.00038817 80.165 By MS/MS By MS/MS 1 1 1.1518 1.0223 24.341 2 Median 0.92056 0.86068 NaN 1 0 Median 1.441 1.2143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10312000 4925300 5386600 7686800 3949100 3737700 2625000 976140 1648900 0 0 0 0 0 0 0 0 0 0 0 0 24284 2469 25396 128411;128412 129248;129249;129250;129251 129251 4 MGHSAPLTNIR IFDGPTGEGRLLRFRMGHSAPLTNIRYYGQ LRFRMGHSAPLTNIRYYGQNGQQILSASQD R M G I R Y 1 1 1 0 0 0 0 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 11 0 1195.6132 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 320 330 WDR36 WD repeat-containing protein 36 yes no 3 0.00082101 70.977 By MS/MS By MS/MS 1 1 1.7014 1.646 21.115 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2859 1.4177 NaN 1 1 Median 2.2512 1.911 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3164800 418160 2746600 0 0 0 0 0 0 2725900 378940 2347000 438820 39212 399610 0 0 0 0 0 0 24285 188 25397 128413;128414 129252;129253 129252 2 MGHTVTVWNR GLGLMGSGIVSNLLKMGHTVTVWNRTAEKC SNLLKMGHTVTVWNRTAEKCDLFIQEGARL K M G N R T 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 2 1 0 2 0 0 10 0 1199.587 Q49A26;K7EMM8 Q49A26 289 298 GLYR1 Putative oxidoreductase GLYR1 yes no 3 0.00016791 113.62 By MS/MS By MS/MS 1 2 1.0537 1.1318 15.258 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1438 1.1941 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96956 1.0071 16.501 2 0 Median NaN NaN NaN 0 0 Median 11797000 5652100 6144700 0 0 0 0 0 0 3349400 1533700 1815600 0 0 0 8447400 4118400 4329000 0 0 0 24286 3018 25398 128415;128416;128417 129254;129255;129256;129257 129256 4 MGIGGLDKEFSDIFR ENRQSIINPDWNFEKMGIGGLDKEFSDIFR MGIGGLDKEFSDIFRRAFASRVFPPEIVEQ K M G F R R 0 1 0 2 0 0 1 3 0 2 1 1 1 2 0 1 0 0 0 0 0 0 15 1 1683.829 I3L0N3;P46459 I3L0N3 213 227 NSF Vesicle-fusing ATPase yes no 2 0.00062306 78.653 By MS/MS 1 1.6283 1.6225 NaN 1 Median NaN NaN NaN 0 0 Median 1.6283 1.6225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4383900 1698600 2685300 0 0 0 4383900 1698600 2685300 0 0 0 0 0 0 0 0 0 0 0 0 24287 1272 25399 128418 129258;129259 129258 2 MGITGNTSPFGQPFSQAGGQPMGATGVNPQLASK GHAGLNTAQAGGMAKMGITGNTSPFGQPFS QPMGATGVNPQLASKQSMVNSLPTFPTDIK K M G S K Q 3 0 2 0 0 4 0 7 0 1 1 1 2 2 4 3 3 0 0 1 0 0 34 0 3332.5918 Q92793 Q92793 267 300 CREBBP CREB-binding protein yes yes 3 0.0031534 26.898 By MS/MS 1 0.47169 0.5254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47169 0.5254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4861900 3698400 1163600 0 0 0 0 0 0 4861900 3698400 1163600 0 0 0 0 0 0 0 0 0 24288 3557 25400 128419 129260 129260 1 MGIVGPEFK DPIKGLKLTVEEAVRMGIVGPEFKDKLLSA VEEAVRMGIVGPEFKDKLLSAERAVTGYKD R M G F K D 0 0 0 0 0 0 1 2 0 1 0 1 1 1 1 0 0 0 0 1 0 0 9 0 976.50519 Q15149;H0YDN1 Q15149 4130 4138 PLEC Plectin yes no 2 0.0078737 50.607 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.0945 1.1022 57.917 4 Median 2.0913 2.0791 NaN 1 0 Median 0.59835 0.52463 NaN 1 0 Median 1.1929 1.3017 NaN 1 0 Median 1.0042 0.9333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11202000 5897200 5304700 1063800 351080 712720 7120200 4358400 2761800 2394000 884510 1509500 623980 303240 320740 0 0 0 0 0 0 24289 2933 25401 128420;128421;128422;128423 129261;129262;129263 129261 3 MGIVGPEFKDK DPIKGLKLTVEEAVRMGIVGPEFKDKLLSA EAVRMGIVGPEFKDKLLSAERAVTGYKDPY R M G D K L 0 0 0 1 0 0 1 2 0 1 0 2 1 1 1 0 0 0 0 1 0 0 11 1 1219.6271 Q15149;H0YDN1 Q15149 4130 4140 PLEC Plectin yes no 3 0.00093692 50.786 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.12 1.2525 18.76 5 Median 0.9898 1.0789 NaN 1 0 Median 1.3293 1.2639 NaN 1 0 Median 0.83836 0.95234 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2891 1.4015 15.896 2 0 Median NaN NaN NaN 0 0 Median 16574000 7978500 8595900 6731500 3672700 3058800 2372600 894230 1478400 4088500 1964500 2124000 0 0 0 3381800 1447100 1934700 0 0 0 24290 2933 25402 128424;128425;128426;128427;128428 129264;129265 129264 2 MGLALSSLNK RAICIDPAYSKAYGRMGLALSSLNKHVEAV KAYGRMGLALSSLNKHVEAVAYYKKALELD R M G N K H 1 0 1 0 0 0 0 1 0 0 3 1 1 0 0 2 0 0 0 0 0 0 10 0 1032.5638 O43765 O43765 165 174 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes yes 2 0.017501 54.712 By MS/MS By matching By matching 2 1 1 1.1061 1.0298 48.339 4 Median 1.1061 1.0298 8.0787 2 1 Median 0.51712 0.44405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2578 1.3417 NaN 1 0 Median NaN NaN NaN 0 0 Median 75977000 30943000 45034000 74818000 30480000 44338000 342740 173970 168760 0 0 0 0 0 0 816030 289110 526920 0 0 0 24291 1588 25403;25404 128429;128430;128431;128432 129266;129267 129267 516 2 MGLAMGGGGGASFDR MGPAMGPALGAGIERMGLAMGGGGGASFDR MGLAMGGGGGASFDRAIEMERGNFGGSFAG R M G D R A 2 1 0 1 0 0 0 6 0 0 1 0 2 1 0 1 0 0 0 0 0 0 15 0 1382.6071 A0A087X0X3;P52272;M0R2I7;M0QY96 A0A087X0X3 607 621 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 5.0635E-18 170.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 10 12 12 26 11 1.1657 1.0393 27.077 74 Median 1.6716 1.6342 23.875 7 1 Median 1.1126 0.94287 10.686 10 0 Median 1.0872 1.1103 28.24 12 0 Median 1.2155 0.99955 13.077 12 0 Median 0.90906 0.91286 25.926 23 4 Median 1.4101 1.1784 15.421 10 0 Median 746580000 380000000 366580000 44950000 17281000 27669000 60058000 27304000 32755000 265630000 136960000 128660000 23388000 10218000 13170000 316200000 173770000 142420000 36362000 14463000 21899000 24292 116 25405;25406;25407 128433;128434;128435;128436;128437;128438;128439;128440;128441;128442;128443;128444;128445;128446;128447;128448;128449;128450;128451;128452;128453;128454;128455;128456;128457;128458;128459;128460;128461;128462;128463;128464;128465;128466;128467;128468;128469;128470;128471;128472;128473;128474;128475;128476;128477;128478;128479;128480;128481;128482;128483;128484;128485;128486;128487;128488;128489;128490;128491;128492;128493;128494;128495;128496;128497;128498;128499;128500;128501;128502;128503;128504;128505;128506;128507;128508;128509;128510;128511 129268;129269;129270;129271;129272;129273;129274;129275;129276;129277;129278;129279;129280;129281;129282;129283;129284;129285;129286;129287;129288;129289;129290;129291;129292;129293;129294;129295;129296;129297;129298;129299;129300;129301;129302;129303;129304;129305;129306;129307;129308;129309;129310;129311;129312;129313;129314;129315;129316;129317;129318;129319;129320;129321;129322;129323;129324;129325;129326;129327;129328;129329;129330;129331;129332;129333;129334;129335;129336;129337;129338;129339;129340;129341;129342;129343;129344;129345;129346;129347;129348;129349;129350;129351;129352;129353;129354;129355;129356;129357;129358;129359;129360;129361;129362;129363;129364;129365;129366;129367;129368;129369;129370;129371;129372;129373;129374 129355 52;53 106 MGLEVIPVTSTTNK EDTWKAYCEKQKRIRMGLEVIPVTSTTNKI RMGLEVIPVTSTTNKITAEDCTMEVTPGAE R M G N K I 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 1 3 0 0 2 0 0 14 0 1488.7858 Q6UN15;A0A0B4J203 Q6UN15 197 210 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 5.3666E-07 115.18 By MS/MS By matching By MS/MS 4 2 1 0.83015 0.81636 22.881 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82175 0.81481 23.136 4 1 Median 0.81159 0.70016 32.723 2 0 Median 0.90534 0.86628 NaN 1 0 Median NaN NaN NaN 0 0 Median 93469000 48077000 45391000 0 0 0 0 0 0 90702000 46796000 43906000 410530 213130 197400 2356400 1068400 1288000 0 0 0 24293 3185 25408;25409 128512;128513;128514;128515;128516;128517;128518 129375;129376;129377;129378;129379;129380;129381 129376 1680 7 MGLGGNPYGPAGTGK PLTDKCYLTLTQAMKMGLGGNPYGPAGTGK MGLGGNPYGPAGTGKTESVKALGGLLGRQV K M G G K T 1 0 1 0 0 0 0 6 0 0 1 1 1 0 2 0 1 0 1 0 0 0 15 0 1375.6554 Q8NCM8 Q8NCM8 1681 1695 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 4.8594E-05 70.488 By MS/MS 1 0.4426 0.44019 NaN 1 Median 0.4426 0.44019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5234400 2861400 2373000 5234400 2861400 2373000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24294 3418 25410 128519 129382 129382 1 MGLIQTADQLR SVDIKKVLLEMRKFRMGLIQTADQLRFSYL RKFRMGLIQTADQLRFSYLAVIEGAKFIMG R M G L R F 1 1 0 1 0 2 0 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 11 0 1244.6547 P18031;B4DSN5 P18031 258 268 PTPN1 Tyrosine-protein phosphatase non-receptor type 1;Tyrosine-protein phosphatase non-receptor type yes no 2 0.00018909 108.98 By MS/MS By MS/MS By matching 4 1 2 0.92525 0.87656 33.527 7 Median 0.86458 0.82828 45.619 4 0 Median NaN NaN NaN 0 0 Median 0.88646 0.87656 NaN 1 1 Median 1.0216 0.89148 9.8046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34922000 17113000 17810000 24664000 11915000 12749000 0 0 0 9539200 4871900 4667300 719180 325850 393320 0 0 0 0 0 0 24295 2052 25411 128520;128521;128522;128523;128524;128525;128526 129383;129384;129385;129386;129387 129384 5 MGLKDTPTQEDWLVSVLPEGSR LQAAKQMDSNWTLMKMGLKDTPTQEDWLVS TQEDWLVSVLPEGSRVGVDPLIIPTDYWKK K M G S R V 0 1 0 2 0 1 2 2 0 0 3 1 1 0 2 2 2 1 0 2 0 0 22 1 2457.221 Q9NQW7;Q5T6H7;Q5T6H2;Q5T6H3 Q9NQW7 95 116 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 3 9.8313E-07 39.647 By MS/MS 1 0.7306 0.73959 NaN 1 Median 0.7306 0.73959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2358600 1329100 1029400 2358600 1329100 1029400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24296 4070 25412 128527 129388;129389 129389 2 MGLLAVLR GFRTKAEHLDHVMFRMGLLAVLRSKQTKST LDHVMFRMGLLAVLRSKQTKSTIGVMVTAS R M G L R S 1 1 0 0 0 0 0 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 8 0 871.53134 H0Y987;O95394;A0A494C0G1;A0A494C163;A0A494C099;D6RCQ8;D6RF77;D6RC77;D6RCD1 H0Y987 42 49 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.013618 52.683 By MS/MS By matching By matching 1 2 1 1.1491 1.0534 17.317 4 Median 1.1021 1.0861 NaN 1 0 Median 1.2069 1.0534 0.27804 2 0 Median 0.72542 0.75359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6790900 3200200 3590700 3625700 1762100 1863600 2475100 1105000 1370000 690160 333090 357060 0 0 0 0 0 0 0 0 0 24297 1165 25413 128528;128529;128530;128531 129390;129391 129390 2 MGLSMER RMGSGVERMGPAIERMGLSMERMVPAGMGA RMGPAIERMGLSMERMVPAGMGAGLERMGP R M G E R M 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 7 0 822.37279 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 525 531 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0030939 105.2 By matching By matching By MS/MS By MS/MS By MS/MS 2 2 1 5 2 1.0842 1.0006 25.438 12 Median 1.5465 1.519 1.8283 2 0 Median 1.1962 1.0369 9.9498 2 0 Median 0.92764 0.93833 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87693 0.87821 19.336 5 0 Median 1.3808 1.1178 6.8786 2 0 Median 100550000 51424000 49127000 7034300 2561900 4472400 8437800 3983100 4454700 22397000 11711000 10686000 0 0 0 55538000 30085000 25453000 7144500 3083900 4060700 24298 116;1423 25414;25415 128532;128533;128534;128535;128536;128537;128538;128539;128540;128541;128542;128543 129392;129393;129394;129395;129396;129397;129398;129399 129393 54 8 MGLVDQLVEPLGPGLKPPEER MMLTGRSIRADRAKKMGLVDQLVEPLGPGL LVEPLGPGLKPPEERTIEYLEEVAITFAKG K M G E R T 0 1 0 1 0 1 3 3 0 0 4 1 1 0 4 0 0 0 0 2 0 0 21 1 2273.209 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 215 235 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 3 1.7851E-07 49.973 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.68821 0.68809 26.927 5 Median 0.55005 0.56428 NaN 1 0 Median 0.59908 0.59467 20.635 2 1 Median 0.71643 0.76082 NaN 1 0 Median 1.0911 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58723000 35159000 23564000 5704100 3805400 1898800 43657000 26460000 17197000 2963900 1776400 1187500 6398200 3117000 3281200 0 0 0 0 0 0 24299 1180 25416;25417 128544;128545;128546;128547;128548 129400;129401;129402;129403;129404;129405;129406;129407;129408;129409 129406 395 10 MGLVMDR GLGHGMDRVGSEIERMGLVMDRMGSVERMG RVGSEIERMGLVMDRMGSVERMGSGIERMG R M G D R M 0 1 0 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 0 7 0 820.39353 A0A087X0X3;P52272;M0QZM1 A0A087X0X3 437 443 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.00072673 138.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 6 6 1.1232 1.0088 20.69 26 Median 1.5865 1.5782 11.536 3 0 Median 1.0073 0.87125 4.3284 3 0 Median 0.91564 0.95033 18.1 4 0 Median 1.2956 1.1205 17.742 4 0 Median 0.87836 0.88743 6.0777 6 0 Median 1.5105 1.2527 6.8384 6 0 Median 201100000 99153000 101940000 15688000 5660300 10028000 19114000 9536200 9577900 45403000 23757000 21647000 5167600 2419800 2747800 91575000 48136000 43439000 24148000 9644400 14503000 24300 116;1423 25418;25419;25420 128549;128550;128551;128552;128553;128554;128555;128556;128557;128558;128559;128560;128561;128562;128563;128564;128565;128566;128567;128568;128569;128570;128571;128572;128573;128574 129410;129411;129412;129413;129414;129415;129416;129417;129418;129419;129420;129421;129422;129423;129424;129425;129426;129427;129428;129429;129430;129431;129432;129433 129414 55;56 23 MGMGNNYSGGYGTPDGLGGYGR RDGMDNQGGYGSVGRMGMGNNYSGGYGTPD SGGYGTPDGLGGYGRGGGGSGGYYGQGGMS R M G G R G 0 1 2 1 0 0 0 9 0 0 1 0 2 0 1 1 1 0 3 0 0 0 22 0 2179.9051 P31942 P31942 302 323 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 1.6111E-25 135.02 By MS/MS By matching By MS/MS By matching 1 1 6 1 0.85441 0.87111 13.809 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76104 0.74051 NaN 1 0 Median 0.80747 0.67988 NaN 1 0 Median 0.8598 0.8748 13.453 6 0 Median 0.8596 0.75779 NaN 1 0 Median 38101000 19892000 18209000 0 0 0 0 0 0 2002300 1180000 822220 262120 145890 116230 35650000 18484000 17166000 186810 82318 104490 24301 2208 25421;25422 128575;128576;128577;128578;128579;128580;128581;128582;128583 129434;129435;129436;129437;129438;129439;129440;129441;129442;129443 129437 946;947 10 MGNTPDSASDNLGFR TADGSANHRARVTTRMGNTPDSASDNLGFR MGNTPDSASDNLGFRCAADAGRPPGEL___ R M G F R C 1 1 2 2 0 0 0 2 0 0 1 0 1 1 1 2 1 0 0 0 0 0 15 0 1580.6889 J3KQJ1;Q8NBJ7;E9PBT8;A8MXB9;A0A494C1B1;J3QT17 J3KQJ1 294 308 SUMF2 Sulfatase-modifying factor 2 yes no 2 5.196E-10 112.15 By MS/MS By MS/MS By MS/MS 1 1 1 1.2105 1.0078 32.211 3 Median 0.66618 0.62351 NaN 1 0 Median 1.2105 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3782 1.1498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25567000 14031000 11536000 17751000 10349000 7402000 5905300 2721100 3184200 0 0 0 1910200 960440 949740 0 0 0 0 0 0 24302 1319 25423 128584;128585;128586 129444;129445;129446;129447;129448 129444 5 MGPAIER RVGQTIERMGSGVERMGPAIERMGLSMERM RMGSGVERMGPAIERMGLSMERMVPAGMGA R M G E R M 1 1 0 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 7 0 772.39016 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 518 524 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.059072 50.127 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 936070 0 936070 0 0 0 0 0 0 308500 0 308500 0 0 0 627570 0 627570 0 0 0 24303 116;1423 25424 128587;128588 129449;129450 129449 57 2 MGPAMGPALGAGIER ERMGLERMGANSLERMGPAMGPALGAGIER MGPAMGPALGAGIERMGLAMGGGGGASFDR R M G E R M 3 1 0 0 0 0 1 4 0 1 1 0 2 0 2 0 0 0 0 0 0 0 15 0 1426.7061 A0A087X0X3;P52272;M0R2I7;M0QY96;M0QZM1 A0A087X0X3 592 606 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 4.243E-19 157.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 8 10 26 14 0.87686 0.77744 30.228 74 Median 1.0337 0.98386 15.98 8 2 Median 0.83911 0.70492 38.49 8 4 Median 0.87691 0.90142 28.69 8 0 Median 0.91416 0.76069 34.567 10 1 Median 0.67137 0.68155 28.712 26 12 Median 1.0069 0.82079 17.466 14 1 Median 1160300000 668530000 491730000 77594000 37851000 39744000 53674000 23528000 30146000 189590000 109380000 80206000 19039000 9898600 9140200 753510000 456500000 297010000 66846000 31370000 35476000 24304 116;1423 25425;25426;25427 128589;128590;128591;128592;128593;128594;128595;128596;128597;128598;128599;128600;128601;128602;128603;128604;128605;128606;128607;128608;128609;128610;128611;128612;128613;128614;128615;128616;128617;128618;128619;128620;128621;128622;128623;128624;128625;128626;128627;128628;128629;128630;128631;128632;128633;128634;128635;128636;128637;128638;128639;128640;128641;128642;128643;128644;128645;128646;128647;128648;128649;128650;128651;128652;128653;128654;128655;128656;128657;128658;128659;128660;128661;128662 129451;129452;129453;129454;129455;129456;129457;129458;129459;129460;129461;129462;129463;129464;129465;129466;129467;129468;129469;129470;129471;129472;129473;129474;129475;129476;129477;129478;129479;129480;129481;129482;129483;129484;129485;129486;129487;129488;129489;129490;129491;129492;129493;129494;129495;129496;129497;129498;129499;129500;129501;129502;129503;129504;129505;129506;129507;129508;129509;129510;129511;129512;129513;129514;129515;129516;129517;129518;129519;129520;129521;129522;129523 129500 58;59 72 MGPGAASGGERPNLK VEQAFMTMAAEIKKRMGPGAASGGERPNLK MGPGAASGGERPNLKIDSTPVKPAGGGCC_ R M G L K I 2 1 1 0 0 0 1 4 0 0 1 1 1 0 2 1 0 0 0 0 0 0 15 1 1440.7143 Q9H0U4;E9PLD0 Q9H0U4 173 187 RAB1B Ras-related protein Rab-1B yes no 2;3 8.1173E-05 70.98 By MS/MS By MS/MS By MS/MS By matching 5 6 1 1 0.8867 0.85081 30.849 12 Median 0.83257 0.84372 13.487 5 0 Median 0.97233 0.85796 44.003 5 0 Median 0.96115 0.99534 NaN 1 1 Median 0.69463 0.61551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83146000 43335000 39810000 48067000 25182000 22885000 29717000 15155000 14562000 4560700 2523600 2037100 800850 474310 326540 0 0 0 0 0 0 24305 3929 25428 128663;128664;128665;128666;128667;128668;128669;128670;128671;128672;128673;128674;128675 129524;129525;129526;129527;129528;129529;129530;129531;129532;129533;129534;129535;129536;129537;129538;129539;129540 129535 17 MGPGIGAILER GMGMGLDRMSSSFDRMGPGIGAILERSIDM SFDRMGPGIGAILERSIDMDRGFLSGPMGS R M G E R S 1 1 0 0 0 0 1 3 0 2 1 0 1 0 1 0 0 0 0 0 0 0 11 0 1112.6012 A0A0A0MQW0;A0A0A0MR39;A0A0C4DGV1;Q9P2K5;H0YN19;A0A087WUT0;H0YKS1 A0A0A0MQW0 463 473 MYEF2 Myelin expression factor 2 yes no 2 0.00016143 81.338 By matching By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 3 2 0.83228 0.68229 31.285 11 Median 0.97601 0.98291 4.1822 2 0 Median 1.1281 0.97925 NaN 1 0 Median 0.54955 0.55628 13.87 2 0 Median 0.99997 0.85258 NaN 1 0 Median 0.54151 0.54061 17.035 3 0 Plateau 0.83267 0.70137 3.8995 2 0 Median 44724000 27000000 17723000 4741800 2400200 2341600 3442000 1610100 1831900 20231000 12939000 7291900 321390 160720 160670 15101000 9396200 5705000 886610 494290 392310 24306 149 25429 128676;128677;128678;128679;128680;128681;128682;128683;128684;128685;128686 129541;129542;129543;129544;129545;129546 129545 6 MGPLGLDHMASSIER DRMGSVERMGSGIERMGPLGLDHMASSIER MGPLGLDHMASSIERMGQTMERIGSGVERM R M G E R M 1 1 0 1 0 0 1 2 1 1 2 0 2 0 1 2 0 0 0 0 0 0 15 0 1612.7701 A0A087X0X3;P52272;M0QZM1 A0A087X0X3 457 471 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2;3 2.7931E-10 136.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 14 10 27 17 0.97869 0.92411 35.375 76 Median 1.2749 1.2059 23.162 5 0 Median 0.99995 0.87331 33.516 4 0 Median 0.94896 0.97057 52.565 14 1 Median 1.0544 0.89467 43.998 10 0 Median 0.75621 0.76315 28.366 26 5 Median 1.2133 0.98719 14.778 17 0 Median 996960000 547660000 449310000 54869000 23280000 31589000 16808000 8280400 8527100 238780000 125620000 113150000 17795000 8642400 9152500 640160000 369700000 270460000 28555000 12133000 16422000 24307 116;1423 25430;25431;25432 128687;128688;128689;128690;128691;128692;128693;128694;128695;128696;128697;128698;128699;128700;128701;128702;128703;128704;128705;128706;128707;128708;128709;128710;128711;128712;128713;128714;128715;128716;128717;128718;128719;128720;128721;128722;128723;128724;128725;128726;128727;128728;128729;128730;128731;128732;128733;128734;128735;128736;128737;128738;128739;128740;128741;128742;128743;128744;128745;128746;128747;128748;128749;128750;128751;128752;128753;128754;128755;128756;128757;128758;128759;128760;128761;128762;128763 129547;129548;129549;129550;129551;129552;129553;129554;129555;129556;129557;129558;129559;129560;129561;129562;129563;129564;129565;129566;129567;129568;129569;129570;129571;129572;129573;129574;129575;129576;129577;129578;129579;129580;129581;129582;129583;129584;129585;129586;129587;129588;129589;129590;129591;129592;129593;129594;129595;129596 129581 60;61 50 MGPLINRPHLER TQRIKIGDPLLEDTRMGPLINRPHLERVLG DTRMGPLINRPHLERVLGFVKVAKEQGAKV R M G E R V 0 2 1 0 0 0 1 1 1 1 2 0 1 0 2 0 0 0 0 0 0 0 12 1 1431.7769 P49189 P49189 327 338 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2;3 8.9283E-05 83.314 By MS/MS By matching 2 1 0.98999 0.99367 69.773 3 Plateau 0.86276 0.87126 19.453 2 0 Median NaN NaN NaN 0 0 Median 0.22965 0.26644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47449000 25712000 21737000 44779000 23564000 21214000 0 0 0 2670400 2148000 522410 0 0 0 0 0 0 0 0 0 24308 2372 25433 128764;128765;128766 129597;129598;129599;129600 129598 4 MGPNIYELR QLLLEFSFWNEPQPRMGPNIYELRTYKLKP NEPQPRMGPNIYELRTYKLKPGTMIEWGNN R M G L R T 0 1 1 0 0 0 1 1 0 1 1 0 1 0 1 0 0 0 1 0 0 0 9 0 1091.5434 Q9BPW8;C9JDV8;H7C2U6 Q9BPW8 180 188 NIPSNAP1 Protein NipSnap homolog 1 yes no 2 0.0013564 82.426 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.78977 0.76867 24.901 4 Median 0.75337 0.71738 NaN 1 0 Median 1.4064 1.1896 NaN 1 0 Median 0.71611 0.68793 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82793 0.82362 NaN 1 0 Median NaN NaN NaN 0 0 Median 140950000 79437000 61516000 109310000 61944000 47369000 11719000 4903500 6815700 15209000 9918000 5291400 0 0 0 4711600 2671800 2039700 0 0 0 24309 3777 25434 128767;128768;128769;128770 129601;129602;129603;129604;129605;129606;129607 129601 7 MGPPVGGHR DEGYGPPPPHYEGRRMGPPVGGHRRGPSRY HYEGRRMGPPVGGHRRGPSRYGPQYGHPPP R M G H R R 0 1 0 0 0 0 0 3 1 0 0 0 1 0 2 0 0 0 0 1 0 0 9 0 906.4494 A0A3B3ITJ4;M0QXS5;P14866 P14866 345 353 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.010839 58.981 By MS/MS By MS/MS By MS/MS 1 1 2 0.72288 0.7433 14.274 4 Median NaN NaN NaN 0 0 Median 0.72103 0.62453 NaN 1 1 Median 0.71923 0.75854 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78713 0.80234 13.68 2 0 Median NaN NaN NaN 0 0 Median 8274300 4475000 3799300 0 0 0 2283000 1098100 1184900 1518500 851550 666990 0 0 0 4472700 2525400 1947400 0 0 0 24310 2011;436 25435 128771;128772;128773;128774 129608;129609;129610 129609 3 MGPSGGEGMEPERR QISNIKYHEEFEKSRMGPSGGEGMEPERRD RMGPSGGEGMEPERRDSQDGSSYRRPLEQQ R M G R R D 0 2 0 0 0 0 3 4 0 0 0 0 2 0 2 1 0 0 0 0 0 0 14 1 1488.6449 Q14847;C9J9W2 Q14847 131 144 LASP1 LIM and SH3 domain protein 1 yes no 3 0.0040812 29.328 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.8065 0.9567 19.886 4 Linear 0.79169 0.8523 NaN 1 0 Median 0.82159 0.75623 NaN 1 0 Median 0.99331 1.0368 NaN 1 0 Median 0.73513 0.64712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4663000 2361500 2301500 1347000 618670 728310 1169200 631920 537230 1698900 854730 844130 447980 256160 191820 0 0 0 0 0 0 24311 2901 25436 128775;128776;128777;128778 129611;129612;129613;129614 129613 4 MGPVMDR MERMVPAGMGAGLERMGPVMDRMATGLERM GMGAGLERMGPVMDRMATGLERMGANNLER R M G D R M 0 1 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 1 0 0 7 0 804.36223 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 544 550 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.0006141 139.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 4 3 0.89681 0.89991 18.922 12 Median 1.1063 1.0932 24.54 2 0 Median 0.93864 0.81209 9.6644 2 0 Median 0.86511 0.8812 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73166 0.73585 13.697 4 0 Median 1.261 1.0633 4.3225 3 0 Median 79707000 42433000 37274000 5656500 2471700 3184800 14392000 7408400 6983500 11139000 6032500 5106600 0 0 0 38719000 22282000 16437000 9800500 4238500 5562000 24312 116;1423 25437 128779;128780;128781;128782;128783;128784;128785;128786;128787;128788;128789;128790 129615;129616;129617;129618;129619;129620;129621;129622;129623;129624;129625;129626;129627;129628;129629 129622 15 MGQAVPAPTGAPPGGQPDYSAAWAEYYR GQVDYTKAWEEYYKKMGQAVPAPTGAPPGG GGQPDYSAAWAEYYRQQAAYYAQTSPQGMP K M G Y R Q 6 1 0 1 0 2 1 4 0 0 0 0 1 0 5 1 1 1 3 1 0 0 28 0 2907.3286 Q96AE4;E9PEB5 Q96AE4 593 620 FUBP1 Far upstream element-binding protein 1 yes no 2;3 3.0743E-05 30.816 By MS/MS By MS/MS By matching By matching 1 2 1 2 0.59284 0.58446 11.379 5 Median 0.59284 0.58446 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60513 0.6351 NaN 1 0 Median 0.59063 0.57699 NaN 1 0 Median 0.54029 0.60359 21.512 2 0 Median NaN NaN NaN 0 0 Median 23322000 17734000 5587600 2222700 1544200 678590 0 0 0 18109000 14471000 3638100 599870 325950 273920 2389700 1392800 996950 0 0 0 24313 3599 25438 128791;128792;128793;128794;128795;128796 129630;129631 129630 2 MGQEFVESK PRKIKTRKEEWEKMKMGQEFVESKEKLGTS EWEKMKMGQEFVESKEKLGTSGYPPTLVYQ K M G S K E 0 0 0 0 0 1 2 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 9 0 1053.4801 Q9Y6W5 Q9Y6W5 208 216 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 2 0.0054507 57.59 By matching By MS/MS By matching 1 1 1 1.1553 1.1629 22.243 3 Median 1.5899 1.538 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.094 1.1629 NaN 1 0 Median 1.1553 0.99105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5989800 2928900 3060900 1705300 643670 1061600 0 0 0 3907100 2109400 1797600 377440 175810 201640 0 0 0 0 0 0 24314 4498 25439 128797;128798;128799 129632 129632 1 MGQHISLAPIHK KPKPVKPVTFSTGIKMGQHISLAPIHKLEE GIKMGQHISLAPIHKLEEALYEYQPLQIET K M G H K L 1 0 0 0 0 1 0 1 2 2 1 1 1 0 1 1 0 0 0 0 0 0 12 0 1330.718 P51948;H0YJ92;H0YJF2 P51948 229 240 MNAT1 CDK-activating kinase assembly factor MAT1 yes no 3 0.0033049 36.284 By matching By MS/MS 1 1 0.75151 0.67598 2.1541 2 Median NaN NaN NaN 0 0 Median 0.81172 0.68636 NaN 1 0 Median 0.69576 0.66577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5395300 3092500 2302900 0 0 0 1448900 807470 641390 3946500 2285000 1661500 0 0 0 0 0 0 0 0 0 24315 2445 25440 128800;128801 129633 129633 1 MGQHSSNVQWR MKGHFYMHAGSLLLKMGQHSSNVQWRALSE LLLKMGQHSSNVQWRALSELAALCYLIAFQ K M G W R A 0 1 1 0 0 2 0 1 1 0 0 0 1 0 0 2 0 1 0 1 0 0 11 0 1328.6044 P49792 P49792 300 310 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.001135 48.44 By matching By MS/MS By matching By matching 2 1 3 1 1.2219 1.0763 25.001 7 Median NaN NaN NaN 0 0 Median 1.3523 1.1551 15.825 2 0 Median 1.0857 1.1989 NaN 1 0 Median 0.98656 0.85681 15.139 3 0 Median NaN NaN NaN 0 0 Median 2.0187 1.6812 NaN 1 0 Median 6452200 2638200 3814100 0 0 0 2179900 801510 1378300 2623700 1179500 1444200 1139100 521030 618110 0 0 0 509570 136130 373440 24316 2401 25441 128802;128803;128804;128805;128806;128807;128808 129634;129635 129635 2 MGQMAMGGAMGINNR GFKGTFPDAREQEIRMGQMAMGGAMGINNR MGQMAMGGAMGINNRGAMPPAPVPAGTPAP R M G N R G 2 1 2 0 0 1 0 4 0 1 0 0 4 0 0 0 0 0 0 0 0 0 15 0 1537.6622 Q15233 Q15233 384 398 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 1.3964E-71 242.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 16 16 13 4 1.1131 1.0602 12.253 53 Median 1.2073 1.1678 13.836 2 0 Median 1.2191 1.0678 14.574 2 0 Median 1.0139 1.0115 7.8418 16 2 Median 1.3868 1.1852 7.2656 16 3 Median 1.0065 1.0104 10.54 13 1 Median 1.2472 1.0692 24.099 4 0 Median 1533400000 730100000 803310000 29582000 14023000 15559000 6937400 3368600 3568800 1098300000 535170000 563140000 201330000 82650000 118690000 187920000 90918000 97002000 9327100 3974400 5352700 24317 2935 25442;25443;25444;25445 128809;128810;128811;128812;128813;128814;128815;128816;128817;128818;128819;128820;128821;128822;128823;128824;128825;128826;128827;128828;128829;128830;128831;128832;128833;128834;128835;128836;128837;128838;128839;128840;128841;128842;128843;128844;128845;128846;128847;128848;128849;128850;128851;128852;128853;128854;128855;128856;128857;128858;128859;128860;128861 129636;129637;129638;129639;129640;129641;129642;129643;129644;129645;129646;129647;129648;129649;129650;129651;129652;129653;129654;129655;129656;129657;129658;129659;129660;129661;129662;129663;129664;129665;129666;129667;129668;129669;129670;129671;129672;129673;129674;129675;129676;129677;129678;129679;129680;129681;129682;129683;129684;129685;129686;129687;129688;129689;129690;129691;129692;129693;129694;129695;129696;129697;129698;129699;129700;129701;129702;129703;129704;129705;129706;129707;129708;129709;129710;129711;129712;129713;129714;129715;129716;129717;129718;129719;129720;129721;129722;129723 129703 1618;1619;1620;1621 88 MGQMFMYDLYQSR LGLNCAIYATIPVYKMGQMFMYDLYQSRHN YKMGQMFMYDLYQSRHNTEDFTLFTLDDVD K M G S R H 0 1 0 1 0 2 0 1 0 0 1 0 3 1 0 1 0 0 2 0 0 0 13 0 1668.7099 Q9P2I0 Q9P2I0 93 105 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.0011223 58.978 By MS/MS By matching By matching 2 2 1 1.2536 1.1194 9.9793 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1427 1.2201 13.516 2 0 Median 1.4063 1.1795 7.3992 2 0 Median 0.98659 1.0464 NaN 1 0 Median NaN NaN NaN 0 0 Median 9574700 4529500 5045200 0 0 0 0 0 0 8133000 3910900 4222100 754810 323760 431050 686860 294860 392000 0 0 0 24318 4223 25446;25447 128862;128863;128864;128865;128866 129724;129725;129726 129725 1902 3 MGSGIQYGDAALR KILNKIESGELDPERMGSGIQYGDAALRQL ERMGSGIQYGDAALRQLRSPRRAQAPNAQE R M G L R Q 2 1 0 1 0 1 0 3 0 1 1 0 1 0 0 1 0 0 1 0 0 0 13 0 1337.6398 P20338;A0A087WYT5 P20338 188 200 RAB4A Ras-related protein Rab-4A yes no 2 1.0652E-06 113.69 By MS/MS By MS/MS 1 2 1.1487 0.92909 7.5482 3 Median 0.88393 0.83983 NaN 1 0 Median 1.15 0.95102 3.2997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29568000 15867000 13701000 24966000 13599000 11367000 4602300 2268300 2334000 0 0 0 0 0 0 0 0 0 0 0 0 24319 2077 25448 128867;128868;128869 129727;129728;129729;129730 129727 4 MGSQVIIPYR ATGFLGRYVVNHLGRMGSQVIIPYRCDKYD NHLGRMGSQVIIPYRCDKYDIMHLRPMGDL R M G Y R C 0 1 0 0 0 1 0 1 0 2 0 0 1 0 1 1 0 0 1 1 0 0 10 0 1162.6169 A0A3B3ISG8;Q16795;F5GY40 A0A3B3ISG8 76 85 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.010957 43.246 By MS/MS By matching 1 1 1.2957 1.1764 2.9585 2 Median NaN NaN NaN 0 0 Median 1.4324 1.2013 NaN 1 0 Median 1.172 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5402400 2447700 2954700 0 0 0 2691700 1153200 1538400 2710700 1294500 1416200 0 0 0 0 0 0 0 0 0 24320 424 25449 128870;128871 129731 129731 1 MGTPVPRPPQDMGQIGVR AAVLLEQERQQEIAKMGTPVPRPPQDMGQI PVPRPPQDMGQIGVRTPLGPRVAAPVGPVG K M G V R T 0 2 0 1 0 2 0 3 0 1 0 0 2 0 4 0 1 0 0 2 0 0 18 1 1934.9819 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 199 216 SF3B2 Splicing factor 3B subunit 2 yes no 3 4.0655E-05 46.892 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.5331 0.53574 14.22 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4405 0.53574 NaN 1 0 Median 0.4548 0.44525 NaN 1 0 Median 0.56259 0.60993 4.4704 2 0 Median 0.5331 0.48192 NaN 1 0 Median 68296000 44839000 23457000 0 0 0 0 0 0 34146000 22982000 11164000 5823800 3820600 2003200 27476000 17529000 9946800 849920 506980 342940 24321 2817 25450 128872;128873;128874;128875;128876 129732;129733;129734;129735;129736;129737;129738 129735 7 MGVNLTR SSPEMNLPTVSALRKMGVNLTRSNKETVKH PTVSALRKMGVNLTRSNKETVKHSDVLFLA K M G T R S 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 7 0 789.41671 Q96C36;A0A087WTV6;J3KR12;A0A087WX69;A0A087WZF0 Q96C36 48 54 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 2 0.01311 88.029 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3391200 0 3391200 0 0 0 1711000 0 1711000 0 0 0 1680200 0 1680200 0 0 0 0 0 0 24322 3615 25451 128877;128878 129739;129740 129740 2 MGVPYCIIK DPIELVVFLPALCRKMGVPYCIIKGKARLG PALCRKMGVPYCIIKGKARLGRLVHRKTCT K M G I K G 0 0 0 0 1 0 0 1 0 2 0 1 1 0 1 0 0 0 1 1 0 0 9 0 1079.5508 P62424;Q5T8U2 P62424 177 185 RPL7A 60S ribosomal protein L7a yes no 2 0.020872 38.806 By MS/MS By matching 1 2 0.86391 0.79749 15.982 3 Median 0.86391 0.79749 NaN 1 0 Median 0.83591 0.72922 21.387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17889000 9378400 8510300 11538000 5790100 5747700 6351000 3588400 2762600 0 0 0 0 0 0 0 0 0 0 0 0 24323 2589 25452 128879;128880;128881 129741;129742 129741 2 MGYMDPR MEEQMRRQREESYSRMGYMDPRERDMRMGG QREESYSRMGYMDPRERDMRMGGGGAMNMG R M G P R E 0 1 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 7 0 868.35714 P23246;H0Y9K7;H0Y9U2 P23246 600 606 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.032496 48.761 By matching By MS/MS By MS/MS By matching By matching 1 1 1 2 2 1.1511 0.99745 7.4908 7 Median NaN NaN NaN 0 0 Median 1.1511 0.99745 NaN 1 0 Median 0.91247 0.96629 NaN 1 0 Median 1.1903 1.0259 NaN 1 0 Median 0.89542 0.9231 0.16321 2 0 Median 1.3024 1.0973 4.2409 2 0 Median 56266000 27123000 29144000 0 0 0 3764300 1698000 2066200 20464000 10514000 9949900 7888000 3520600 4367300 21354000 10159000 11195000 2795500 1230300 1565300 24324 2107 25453 128882;128883;128884;128885;128886;128887;128888 129743;129744 129744 2 MHALSLK EKELSDSVTLSSSDRMHALSLKIVLLGKIY VTLSSSDRMHALSLKIVLLGKIYAGTPRFF R M H L K I 1 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 0 0 0 7 0 798.44219 O75694;E9PF10 O75694 1241 1247 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.051054 39.663 By MS/MS By MS/MS 1 1 1.1892 1.128 3.8429 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0803 1.1591 NaN 1 0 Median 1.3091 1.0978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2804500 1283800 1520700 0 0 0 0 0 0 1643800 810150 833680 1160700 473610 687050 0 0 0 0 0 0 24325 1692 25454 128889;128890 129745;129746 129746 2 MHDLNTDQENLVGTHDAPIR DPTHAWSGGLDHQLKMHDLNTDQENLVGTH TDQENLVGTHDAPIRCVEYCPEVNVMVTGS K M H I R C 1 1 2 3 0 1 1 1 2 1 2 0 1 0 1 0 2 0 0 1 0 0 20 0 2275.0651 O43684;J3QT28;J3QSX4 O43684 81 100 BUB3 Mitotic checkpoint protein BUB3 yes no 3;4 2.4623E-39 152.01 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 8 5 1 0.85842 0.82675 14.445 16 Median 1.2218 1.2128 NaN 1 0 Median 0.93378 0.80548 NaN 1 0 Median 0.82326 0.84907 6.9699 8 1 Median 0.9554 0.79038 19.304 5 0 Median NaN NaN NaN 0 0 Median 0.99339 0.86873 NaN 1 0 Median 739640000 373980000 365650000 4738900 2143800 2595100 2851800 1451500 1400400 650950000 330730000 320220000 80582000 39380000 41202000 0 0 0 514420 275420 239000 24326 1357 25455;25456 128891;128892;128893;128894;128895;128896;128897;128898;128899;128900;128901;128902;128903;128904;128905;128906 129747;129748;129749;129750;129751;129752;129753;129754;129755;129756;129757;129758;129759;129760;129761;129762;129763;129764;129765;129766;129767;129768 129763 446 22 MHDSSFSHTPDTPTVEAVDRK SIPHKSKEIGFTFPKMHDSSFSHTPDTPTV SHTPDTPTVEAVDRKGGNFQVNFVELGTLG K M H R K G 1 1 0 3 0 0 1 0 2 0 0 1 1 1 2 3 3 0 0 2 0 0 21 1 2356.0754 E7EVA0 E7EVA0 1284 1304 MAP4 Microtubule-associated protein yes yes 3 0.073416 2.9657 By MS/MS By matching 2 1 0.68067 0.71533 12.237 3 Median 0.64992 0.67339 8.5453 2 0 Median 0.89316 0.80967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102620000 59711000 42912000 100440000 58448000 41996000 2179000 1263300 915690 0 0 0 0 0 0 0 0 0 0 0 0 24327 895 25457 128907;128908;128909 129769 129769 1 MHFESGSTLKK GTIGLIHAIANNKDKMHFESGSTLKKFLEE NKDKMHFESGSTLKKFLEESVSMSPEERAR K M H K K F 0 0 0 0 0 0 1 1 1 0 1 2 1 1 0 2 1 0 0 0 0 0 11 1 1263.6282 P15374;A0A087WTB8;Q5TBK7 P15374 111 121 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.0070977 31.597 By MS/MS By MS/MS By matching 1 1 1 1.0844 1.1491 2.9863 3 Median 1.0844 1.1038 NaN 1 0 Median 1.2531 1.1491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0496 1.1701 NaN 1 0 Median NaN NaN NaN 0 0 Median 2761300 1288200 1473100 1334700 657270 677400 1002400 392100 610320 0 0 0 0 0 0 424200 238800 185400 0 0 0 24328 2017 25458 128910;128911;128912 129770;129771;129772;129773 129773 4 MHFVPWLAR VYEIPGLEPITFAGKMHFVPWLARPIFPPW ITFAGKMHFVPWLARPIFPPWDRGYKDPRF K M H A R P 1 1 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 0 1 0 0 9 0 1155.6012 Q9BZE1;S4R369 Q9BZE1 64 72 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.0049234 59.205 By MS/MS By matching 1 1 0.80621 0.83288 27.618 2 Median 0.6754 0.68512 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96236 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603600 1460600 1143000 1556400 922760 633680 0 0 0 1047200 537860 509340 0 0 0 0 0 0 0 0 0 24329 3897 25459 128913;128914 129774 129774 1 MHGGGPSVTAGVPLKK VPNVVVLVATVRALKMHGGGPSVTAGVPLK HGGGPSVTAGVPLKKEYTEENIQLVADGCC K M H K K E 1 0 0 0 0 0 0 4 1 0 1 2 1 0 2 1 1 0 0 2 0 0 16 1 1534.829 A0A087WVM4;B7ZM99;Q6UB35 A0A087WVM4 684 699 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 3 0.0015256 31.596 By MS/MS 1 0.88498 0.82563 NaN 1 Median NaN NaN NaN 0 0 Median 0.88498 0.82563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3358600 1759800 1598800 0 0 0 3358600 1759800 1598800 0 0 0 0 0 0 0 0 0 0 0 0 24330 43 25460 128915 129775 129775 1 MHGGGPTVTAGLPLPK CPHVVVLVATVRALKMHGGGPTVTAGLPLP HGGGPTVTAGLPLPKAYIQENLELVEKGFS K M H P K A 1 0 0 0 0 0 0 4 1 0 2 1 1 0 3 0 2 0 0 1 0 0 16 0 1531.8181 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 706 721 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 7.49E-11 157.68 By MS/MS By MS/MS 2 1 0.6529 0.62911 9.9883 3 Median 0.6344 0.61114 4.0977 2 1 Median 0.84987 0.72118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52182000 30994000 21188000 45220000 27062000 18158000 6962400 3932900 3029500 0 0 0 0 0 0 0 0 0 0 0 0 24331 1968 25461 128916;128917;128918 129776;129777;129778;129779;129780 129776 5 MHHGTGPQNVQHQLQR ______________________________ HHGTGPQNVQHQLQRSRACPGSEGEEQPAH - M H Q R S 0 1 1 0 0 4 0 2 3 0 1 0 1 0 1 0 1 0 0 1 0 0 16 0 1866.902 Q96L91;A0A0A0MR80;A0A0A0MR72 Q96L91 1 16 EP400 E1A-binding protein p400 yes no 4 1.7549E-05 78.486 By MS/MS By matching 1 2 0.81303 0.8684 17.83 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78895 0.8684 NaN 1 0 Median 0.8755 0.84378 25.106 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3645100 2037400 1607700 0 0 0 0 0 0 2826100 1624800 1201300 818990 412570 406420 0 0 0 0 0 0 24332 3700 25462 128919;128920;128921 129781 129781 1 MHIFSMNMK DPSAMDFVTSAANLRMHIFSMNMKSRFDIK SAANLRMHIFSMNMKSRFDIKSMAGNIIPA R M H M K S 0 0 1 0 0 0 0 0 1 1 0 1 3 1 0 1 0 0 0 0 0 0 9 0 1137.5133 Q9UBT2;K7ESK7 Q9UBT2 363 371 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.00053852 116.37 By MS/MS By matching 1 1 0.97278 0.8654 2.1919 2 Median 0.94172 0.85209 NaN 1 0 Median 1.0049 0.87891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17387000 8840800 8546600 12916000 6551800 6364000 4471500 2289000 2182600 0 0 0 0 0 0 0 0 0 0 0 0 24333 4247 25463 128922;128923 129782;129783 129783 2 MHLQEIR KKRKDEIQGVIDEIRMHLQEIRKILKNPSA QGVIDEIRMHLQEIRKILKNPSAQYVTVSG R M H I R K 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 925.48037 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 728 734 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.024489 55.441 By MS/MS 1 1.3863 1.1836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3863 1.1836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 911400 370840 540560 0 0 0 0 0 0 0 0 0 911400 370840 540560 0 0 0 0 0 0 24334 2080 25464 128924 129784;129785 129785 2 MHLSQIQR YTRKAEFRKLCDNLRMHLSQIQRHHNQSTA KLCDNLRMHLSQIQRHHNQSTAINLNNPES R M H Q R H 0 1 0 0 0 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 1011.5284 Q14152 Q14152 203 210 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.003018 134.06 By MS/MS By MS/MS By MS/MS 2 2 1 1.1639 1.0507 10.045 4 Median 1.0269 0.96398 NaN 1 1 Median 1.3603 1.1529 3.5336 2 0 Median 0.9088 0.98171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26769000 11796000 14973000 10382000 5119400 5262200 15266000 6148300 9117900 1121200 528060 593100 0 0 0 0 0 0 0 0 0 24335 2860 25465 128925;128926;128927;128928;128929 129786;129787;129788;129789;129790;129791;129792 129792 7 MHLYLGAAK MRNFDLTAIPCANHKMHLYLGAAKVEVGTE PCANHKMHLYLGAAKVEVGTEVTDYRFFVR K M H A K V 2 0 0 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 1 0 0 0 9 0 1002.5321 Q13085;Q59FY4;O00763;F8W8T8;H0YGH5 Q13085 1401 1409 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.0083623 67.032 By MS/MS 1 0.58263 0.5173 NaN 1 Median NaN NaN NaN 0 0 Median 0.58263 0.5173 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3535900 2077900 1458000 0 0 0 3535900 2077900 1458000 0 0 0 0 0 0 0 0 0 0 0 0 24336 2784 25466 128930 129793 129793 1 MHMWVEDVLDK NVIKLVWRYGFQSLRMHMWVEDVLDKFMRI QSLRMHMWVEDVLDKFMRIYRYQSHDYAFS R M H D K F 0 0 0 2 0 0 1 0 1 0 1 1 2 0 0 0 0 1 0 2 0 0 11 0 1401.6421 Q9UHG3;F8W8W4;C9JM55;C9K055;C9JGT6 Q9UHG3 152 162 PCYOX1 Prenylcysteine oxidase 1 yes no 2 0.027726 32.32 By MS/MS 1 1.5758 1.3417 NaN 1 Median NaN NaN NaN 0 0 Median 1.5758 1.3417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4727800 1878700 2849100 0 0 0 4727800 1878700 2849100 0 0 0 0 0 0 0 0 0 0 0 0 24337 4279 25467 128931 129794 129794 1 MHNQIPQVTSDGK ADGLLSQGYSDFINRMHNQIPQVTSDGKRL NRMHNQIPQVTSDGKRLQVIVCSATLHSFD R M H G K R 0 0 1 1 0 2 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 13 0 1453.6984 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 306 318 DDX1 ATP-dependent RNA helicase DDX1 yes no 2;3 0.010997 40.066 By matching By MS/MS 1 2 0.58352 0.49935 7.421 3 Plateau NaN NaN NaN 0 0 Median 0.50447 0.45409 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57446 0.49935 7.0692 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2956400 2024600 931800 0 0 0 508550 368670 139880 0 0 0 2447800 1655900 791920 0 0 0 0 0 0 24338 135 25468 128932;128933;128934 129795;129796 129796 2 MHNQIPQVTSDGKR ADGLLSQGYSDFINRMHNQIPQVTSDGKRL RMHNQIPQVTSDGKRLQVIVCSATLHSFDV R M H K R L 0 1 1 1 0 2 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 14 1 1609.7995 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 306 319 DDX1 ATP-dependent RNA helicase DDX1 yes no 3;4 0.00012673 68.034 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 0.92775 0.96871 30.324 9 Median 0.8496 0.86723 11.855 2 0 Median 0.48776 0.48819 NaN 1 1 Median 0.9948 1.0964 19.763 4 0 Median 1.0967 1.0433 10.484 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17499000 8731700 8767000 4553100 2323600 2229500 1754000 1165000 589010 7904100 3749100 4155000 3287600 1494000 1793500 0 0 0 0 0 0 24339 135 25469 128935;128936;128937;128938;128939;128940;128941;128942;128943 129797;129798;129799;129800;129801;129802;129803;129804;129805;129806;129807 129803 11 MHSLATAAPVPTTLAQVDR ______________________________ ATAAPVPTTLAQVDREKIYQWINELSSPET - M H D R E 4 1 0 1 0 1 0 0 1 0 2 0 1 0 2 1 3 0 0 2 0 0 19 0 1978.0306 Q92600;F8WBZ6 Q92600 1 19 RQCD1 Cell differentiation protein RCD1 homolog yes no 2 5.464E-05 44.616 By MS/MS 1 0.79068 0.74649 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79068 0.74649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224500 1345900 878570 0 0 0 0 0 0 2224500 1345900 878570 0 0 0 0 0 0 0 0 0 24340 3542 25470 128944 129808 129808 1761 1 MHSLATAAPVPTTLAQVDREK ______________________________ AAPVPTTLAQVDREKIYQWINELSSPETRE - M H E K I 4 1 0 1 0 1 1 0 1 0 2 1 1 0 2 1 3 0 0 2 0 0 21 1 2235.1682 Q92600;F8WBZ6 Q92600 1 21 RQCD1 Cell differentiation protein RCD1 homolog yes no 3 3.333E-06 43.598 By MS/MS By matching By matching 1 1 2 0.69912 0.6685 24.776 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74342 0.76789 NaN 1 0 Median 0.65745 0.58198 NaN 1 0 Median 0.5963 0.66126 38.159 2 0 Median NaN NaN NaN 0 0 Median 8994400 5752400 3242000 0 0 0 0 0 0 3538000 2193400 1344600 380250 241250 139000 5076100 3317800 1758400 0 0 0 24341 3542 25471 128945;128946;128947;128948 129809 129809 1761 1 MHSLLIK TAVWVARNRFAVLDRMHSLLIKNLKNEITK NRFAVLDRMHSLLIKNLKNEITKKVQVPNC R M H I K N 0 0 0 0 0 0 0 0 1 1 2 1 1 0 0 1 0 0 0 0 0 0 7 0 840.48914 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 432 438 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0045798 100.07 By matching By MS/MS By matching 1 2 1 1.1512 1.0022 8.616 4 Median 1.1482 1.1375 NaN 1 0 Median 1.126 0.98405 7.2714 2 0 Median NaN NaN NaN 0 0 Median 1.1541 0.96962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17582000 7794600 9787200 2773600 1416400 1357200 14089000 6090400 7998300 0 0 0 719440 287770 431680 0 0 0 0 0 0 24342 2473 25472 128949;128950;128951;128952 129810;129811 129811 2 MHSPQTSAMLFTVDNEAGK GASAKALNEALKLFKMHSPQTSAMLFTVDN QTSAMLFTVDNEAGKITCLCQVPQNAANRG K M H G K I 2 0 1 1 0 1 1 1 1 0 1 1 2 1 1 2 2 0 0 1 0 0 19 0 2062.9452 P49588 P49588 880 898 AARS Alanine--tRNA ligase, cytoplasmic yes yes 3 1.2173E-14 109.54 By MS/MS By matching 1 1 1.1047 1.0151 23.343 2 Median 0.89158 0.86063 NaN 1 0 Median 1.3688 1.1973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19211000 9373200 9837900 16658000 8161500 8496600 2552900 1211700 1341300 0 0 0 0 0 0 0 0 0 0 0 0 24343 2385 25473 128953;128954 129812;129813 129813 2 MHTTFEHDIQALGTQVR EELGRDQNTVETLQRMHTTFEHDIQALGTQ TTFEHDIQALGTQVRQLQEDAARLQAAYAG R M H V R Q 1 1 0 1 0 2 1 1 2 1 1 0 1 1 0 0 3 0 0 1 0 0 17 0 1982.9632 Q01082;A0A087WUZ3 Q01082 1845 1861 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3;4 3.5308E-19 180.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 7 6 5 3 1 1.1832 1.1238 19.476 26 Median 1.3005 1.2361 5.7212 4 0 Median 1.3526 1.1297 21.007 7 0 Median 0.89841 0.97963 11.509 6 0 Median 1.0708 0.92916 23.425 5 0 Median 1.263 1.3135 3.6852 3 0 Median 1.0806 0.91278 NaN 1 0 Median 343450000 168080000 175370000 43596000 19086000 24510000 42082000 19597000 22485000 227000000 115390000 111610000 5993100 2644900 3348200 24588000 11278000 13310000 187860 84670 103180 24344 2681 25474;25475 128955;128956;128957;128958;128959;128960;128961;128962;128963;128964;128965;128966;128967;128968;128969;128970;128971;128972;128973;128974;128975;128976;128977;128978;128979;128980 129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831;129832;129833;129834;129835;129836 129829 1373 21 MHVQLSTSR EAIRGLDNTEFQGKRMHVQLSTSRLRTAPG EFQGKRMHVQLSTSRLRTAPGMGDQSGCYR R M H S R L 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 2 1 0 0 1 0 0 9 0 1057.5339 Q9BQ04;Q9BWF3;E9PB51 Q9BWF3 141 149 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.00082366 95.909 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 3 1.1467 1.057 14.103 12 Median 1.1571 1.1771 NaN 1 0 Median 1.1266 0.96192 12.746 2 0 Median 1.1242 1.1462 11.717 2 0 Median 1.032 0.89014 25.675 2 0 Median 1.09 1.0838 3.2865 2 0 Median 1.2338 1.0218 10.687 3 0 Median 29925000 14191000 15734000 1383900 629490 754440 5615400 2599300 3016100 6425900 2956000 3469900 1220200 590000 630190 12219000 6014900 6203900 3060400 1401100 1659300 24345 3870;3780 25476 128981;128982;128983;128984;128985;128986;128987;128988;128989;128990;128991;128992 129837;129838;129839;129840;129841;129842;129843;129844 129839 8 MIAAVDTDSPR KRIGDELDSNMELQRMIAAVDTDSPREVFF ELQRMIAAVDTDSPREVFFRVAADMFSDGN R M I P R E 2 1 0 2 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 11 0 1174.5652 Q07812;K4JQN1;I6LPK7 Q07812 79 89 BAX Apoptosis regulator BAX yes no 2 1.7293E-06 163.32 By MS/MS By MS/MS 2 1 0.77933 0.73969 10.473 3 Median 0.77112 0.73753 0.41428 2 0 Median 1.0669 0.88416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76394000 40250000 36144000 62097000 33722000 28375000 14297000 6527600 7769200 0 0 0 0 0 0 0 0 0 0 0 0 24346 2732 25477 128993;128994;128995 129845;129846;129847;129848 129846 4 MIAGQVLDINLAAEPK NERNARAAVAGEDGRMIAGQVLDINLAAEP IAGQVLDINLAAEPKVNRGKAGVKRSAAEM R M I P K V 3 0 1 1 0 1 1 1 0 2 2 1 1 0 1 0 0 0 0 1 0 0 16 0 1681.9073 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6 B2R5W2 74 89 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2;3 1.5311E-25 143.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 8 5 17 15 0.92895 0.87967 38.815 51 Median NaN NaN NaN 0 0 Median 0.89405 0.76391 59.551 6 0 Median 0.70022 0.73029 25.43 8 2 Median 1.1298 0.96813 17.331 5 0 Median 0.9295 0.93062 20.485 17 4 Median 0.98519 0.79874 49.679 15 0 Median 2111400000 1051600000 1059800000 0 0 0 30652000 15316000 15336000 105190000 56906000 48280000 73255000 33184000 40071000 1595200000 796800000 798410000 307130000 149380000 157750000 24347 582 25478;25479 128996;128997;128998;128999;129000;129001;129002;129003;129004;129005;129006;129007;129008;129009;129010;129011;129012;129013;129014;129015;129016;129017;129018;129019;129020;129021;129022;129023;129024;129025;129026;129027;129028;129029;129030;129031;129032;129033;129034;129035;129036;129037;129038;129039;129040;129041;129042;129043;129044;129045;129046 129849;129850;129851;129852;129853;129854;129855;129856;129857;129858;129859;129860;129861;129862;129863;129864;129865;129866;129867;129868;129869;129870;129871;129872;129873;129874;129875;129876;129877;129878;129879;129880;129881;129882;129883;129884;129885;129886 129860 225 38 MIAGQVLDINLAAEPKVNR NERNARAAVAGEDGRMIAGQVLDINLAAEP QVLDINLAAEPKVNRGKAGVKRSAAEMYGS R M I N R G 3 1 2 1 0 1 1 1 0 2 2 1 1 0 1 0 0 0 0 2 0 0 19 1 2051.1197 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6 B2R5W2 74 92 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 0.00065972 31.514 By MS/MS By matching 1 1 1.0515 1.045 12.701 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88482 0.95525 NaN 1 0 Median 1.2496 1.1432 NaN 1 0 Median 2792000 1531000 1261000 0 0 0 0 0 0 0 0 0 0 0 0 2306200 1333700 972520 485790 197350 288440 24348 582 25480 129047;129048 129887 129887 1 MIAILTENYGGK RPVIVHRAILGSVERMIAILTENYGGKWPF VERMIAILTENYGGKWPFWLSPRQVMVVPV R M I G K W 1 0 1 0 0 0 1 2 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 0 1308.6748 P26639 P26639 600 611 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 2.4684E-07 120.12 By MS/MS By matching By MS/MS By MS/MS 3 1 2 2 1.1607 1.0436 8.0035 8 Median 1.1578 1.0099 2.9144 3 2 Plateau 1.2585 1.1048 NaN 1 0 Median 1.1937 1.2058 4.7628 2 0 Median 1.1762 1.0185 1.6815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145830000 65812000 80017000 87113000 39897000 47216000 3443700 1665500 1778200 37737000 15834000 21903000 17536000 8415500 9120100 0 0 0 0 0 0 24349 2147 25481;25482 129049;129050;129051;129052;129053;129054;129055;129056 129888;129889;129890;129891;129892;129893;129894;129895;129896;129897;129898 129894 910 11 MIAPEGSLVFHEK HKIYHLKSKVPAFVRMIAPEGSLVFHEKAW VRMIAPEGSLVFHEKAWNAYPYCRTIVTNE R M I E K A 1 0 0 0 0 0 2 1 1 1 1 1 1 1 1 1 0 0 0 1 0 0 13 0 1456.7384 P48739;A0A0A0MSW4;B3KYB6;B3KYB7 P48739 74 86 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 2;3 0.00017899 82.171 By MS/MS By MS/MS By MS/MS By matching 4 3 1 1 1.0979 0.99985 42.269 9 Median 1.1016 1.0216 17.415 4 0 Median 1.0466 0.87981 17.534 3 0 Median 0.97612 0.9339 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.1336 3.0945 NaN 1 0 Median NaN NaN NaN 0 0 Median 91782000 45509000 46274000 72938000 36551000 36387000 14254000 6899200 7355000 3767400 1855700 1911700 0 0 0 822480 202330 620150 0 0 0 24350 2368 25483 129057;129058;129059;129060;129061;129062;129063;129064;129065 129899;129900;129901;129902;129903;129904;129905 129901 7 MIASDSHRPEVK REKSTFREESPLRIKMIASDSHRPEVKLKM RIKMIASDSHRPEVKLKMAPVPLDDSNRPA K M I V K L 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 2 0 0 0 1 0 0 12 1 1368.682 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 537 548 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2;3 0.00032296 58.172 By MS/MS By MS/MS By MS/MS 2 4 2 0.89629 0.91124 17.397 8 Median NaN NaN NaN 0 0 Median 0.94005 0.89537 9.8242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87265 0.97731 9.0861 4 0 Median 0.82249 0.72191 26.874 2 0 Median 10885000 5608600 5276400 0 0 0 3386400 1762900 1623500 0 0 0 0 0 0 6537300 3335500 3201800 961230 510190 451040 24351 4175 25484 129066;129067;129068;129069;129070;129071;129072;129073 129906;129907;129908;129909;129910 129908 5 MICQQVEAIKK KTPPRWAEDQNSLLKMICQQVEAIKKEMQE SLLKMICQQVEAIKKEMQELKLNSSNSASP K M I K K E 1 0 0 0 1 2 1 0 0 2 0 2 1 0 0 0 0 0 0 1 0 0 11 1 1346.705 P49792 P49792 813 823 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 0.0068063 50.805 By matching By MS/MS By MS/MS 1 2 1 0.94904 1.003 7.3085 3 Median NaN NaN NaN 0 0 Median 0.94904 0.90304 NaN 1 0 Median 0.91589 1.0393 NaN 1 0 Median 0.98726 1.003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11161000 5634800 5526400 0 0 0 3265200 1884900 1380400 6864200 3276100 3588100 1031800 473890 557920 0 0 0 0 0 0 24352 2401 25485 129074;129075;129076;129077 129911;129912;129913;129914 129912 4 MIDAGDALIYMEPEK KGQKVQDVKKTIQKKMIDAGDALIYMEPEK MIDAGDALIYMEPEKQVMSRSSDECVVALC K M I E K Q 2 0 0 2 0 0 2 1 0 2 1 1 2 0 1 0 0 0 1 0 0 0 15 0 1694.7895 Q9P2J5 Q9P2J5 498 512 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.043672 23.851 By MS/MS By matching By matching 1 1 1 1.0443 0.91283 1.3341 3 Median 0.91059 0.9001 NaN 1 0 Median 1.0789 0.92443 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0443 0.91283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4389200 2338300 2050800 3242500 1685800 1556700 1003400 578510 424910 0 0 0 143250 74017 69231 0 0 0 0 0 0 24353 4224 25486 129078;129079;129080 129915 129915 1 MIDLIIPR VNTREEVEDLCRLDKMIDLIIPRGSSQLVR DLCRLDKMIDLIIPRGSSQLVRDIQKAAKG K M I P R G 0 1 0 1 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 0 8 0 969.56812 P54886 P54886 551 558 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0030838 101.69 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 3 6 2 1 2 1.1621 1.0864 14.632 18 Median 0.95233 0.92941 7.4908 4 0 Median 1.5321 1.3595 15.851 3 0 Median 1.1096 1.1483 10.819 6 0 Median 1.1398 1.0001 4.9378 2 0 Median 1.2842 1.3612 NaN 1 0 Median 1.3104 1.0884 0.27143 2 0 Median 118790000 56033000 62759000 20705000 10318000 10387000 9026200 4095900 4930200 85872000 40209000 45663000 223160 105370 117790 2569100 1129000 1440200 397050 175990 221060 24354 2488 25487;25488 129081;129082;129083;129084;129085;129086;129087;129088;129089;129090;129091;129092;129093;129094;129095;129096;129097;129098 129916;129917;129918;129919;129920;129921;129922;129923;129924;129925;129926;129927;129928;129929;129930 129925 1170 15 MIDLSGNPVLR LHLHSSVVRGSESHKMIDLSGNPVLRIYYT ESHKMIDLSGNPVLRIYYTSRPALFTLCAG K M I L R I 0 1 1 1 0 0 0 1 0 1 2 0 1 0 1 1 0 0 0 1 0 0 11 0 1213.6489 O14735;B3KY94;H3BUR9 O14735 122 132 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase yes no 2 0.0001154 133.23 By MS/MS By MS/MS By matching 2 2 1 1.1753 0.97186 10.611 5 Median 0.82001 0.80371 0.50491 2 0 Median 1.1923 0.97712 0.49617 2 0 Median NaN NaN NaN 0 0 Median 1.1923 0.97186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41073000 21315000 19758000 26166000 14291000 11875000 14669000 6870500 7798500 0 0 0 237260 153460 83800 0 0 0 0 0 0 24355 588 25489 129099;129100;129101;129102;129103 129931;129932;129933;129934;129935;129936;129937 129931 7 MIDMGFEPDVQK VLSRCTYVVLDEADRMIDMGFEPDVQKILE ADRMIDMGFEPDVQKILEHMPVSNQKPDTD R M I Q K I 0 0 0 2 0 1 1 1 0 1 0 1 2 1 1 0 0 0 0 1 0 0 12 0 1408.6367 Q9BUQ8 Q9BUQ8 554 565 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 9.2124E-06 98.044 By MS/MS By matching By MS/MS By matching By matching 1 2 2 2 1 0.83036 0.90456 67.091 8 Median 1.1394 1.1089 NaN 1 0 Median 1.142 1.0248 2.7853 2 0 Median 0.83036 0.90456 1.4385 2 0 Median 0.39944 0.36631 60.588 2 0 Median 0.20009 0.21645 NaN 1 0 Median NaN NaN NaN 0 0 Median 43152000 26135000 17017000 6116300 3275400 2840900 1579900 872480 707460 27427000 15214000 12213000 1085400 768880 316530 6943700 6004200 939470 0 0 0 24356 3842 25490;25491 129104;129105;129106;129107;129108;129109;129110;129111 129938;129939;129940;129941;129942 129941 1838 5 MIDMLAANSGR ELKRGAEIIVCTPGRMIDMLAANSGRVTNL TPGRMIDMLAANSGRVTNLRRVTYVVLDEA R M I G R V 2 1 1 1 0 0 0 1 0 1 1 0 2 0 0 1 0 0 0 0 0 0 11 0 1177.5584 Q7L014;A0A0C4DG89 Q7L014 506 516 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 1.3748E-13 135.71 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.1062 0.98009 20.43 4 Median 1.0536 1.0176 NaN 1 0 Median 1.1071 0.9371 NaN 1 0 Median 1.3124 1.4429 NaN 1 0 Median 1.1053 0.94392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25845000 9880700 15964000 6831900 3238900 3593000 4289800 1948300 2341600 13846000 4277500 9568100 877390 416100 461290 0 0 0 0 0 0 24357 3216 25492 129112;129113;129114;129115;129116;129117 129943;129944;129945;129946;129947;129948;129949 129946 7 MIDMPVER KDHIMEIFSTYGKIKMIDMPVERMHPHLSK STYGKIKMIDMPVERMHPHLSKGYAYVEFE K M I E R M 0 1 0 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 1 0 0 8 0 989.46742 H3BV80;H3BMM9;H3BTC0;Q15287;H3BMS0;H3BPG5 H3BV80 95 102 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2 0.0025485 124.08 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 4 4 0.96506 0.94025 25.517 12 Median NaN NaN NaN 0 0 Median 0.49337 0.42533 NaN 1 0 Median 0.95045 0.98277 11.541 2 0 Median 1.2059 1.0492 NaN 1 0 Median 0.95426 0.95857 2.5525 4 1 Median 1.0902 0.90749 17.49 4 0 Median 164330000 77850000 86480000 0 0 0 2738300 1356600 1381800 16120000 8206200 7914200 2454600 1107200 1347400 115070000 54444000 60623000 27950000 12737000 15213000 24358 1212 25493;25494 129118;129119;129120;129121;129122;129123;129124;129125;129126;129127;129128;129129 129950;129951;129952;129953;129954;129955;129956;129957;129958;129959;129960;129961;129962;129963 129953 405 14 MIEAVQNHIGSLNWGYR YGWKVEETVKHDWDRMIEAVQNHIGSLNWG EAVQNHIGSLNWGYRVALREKKVVYENAYG R M I Y R V 1 1 2 0 0 1 1 2 1 2 1 0 1 0 0 1 0 1 1 1 0 0 17 0 1986.9734 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3 E9PIR7 101 117 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2;3 7.5361E-12 97.214 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1.1304 1.0288 32.414 8 Median 1.6062 1.6025 12.791 3 1 Median 1.0587 0.90633 11.729 3 0 Median 0.99883 1.0117 NaN 1 1 Median 0.94462 0.81907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42847000 17424000 25424000 29971000 11189000 18782000 4013400 1939600 2073800 8178200 3971600 4206600 684520 323850 360670 0 0 0 0 0 0 24359 11 25495 129130;129131;129132;129133;129134;129135;129136;129137 129964;129965;129966;129967;129968;129969;129970 129966 7 MIEEAGAIISTR DANVAGNVHGGTILKMIEEAGAIISTRHCN ILKMIEEAGAIISTRHCNSQNGERCVAALA K M I T R H 2 1 0 0 0 0 2 1 0 3 0 0 1 0 0 1 1 0 0 0 0 0 12 0 1289.6649 O00154;K7EKP8 O00154 79 90 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 2 3.9018E-06 121.83 By MS/MS By MS/MS By MS/MS By matching 6 1 1 1 1.174 1.0746 17.623 9 Median 1.085 1.0677 11.817 6 0 Median 1.1995 1.0448 NaN 1 0 Median 1.3163 1.4341 NaN 1 0 Median 1.7554 1.5584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 221310000 98876000 122440000 182860000 81746000 101120000 26614000 12723000 13891000 10431000 3987100 6443600 1406500 420740 985730 0 0 0 0 0 0 24360 1443 25496;25497 129138;129139;129140;129141;129142;129143;129144;129145;129146 129971;129972;129973;129974;129975;129976;129977;129978;129979;129980 129977 467 10 MIEFVVR VVIPTERNLLALIHRMIEFVVREGPMFEAM NLLALIHRMIEFVVREGPMFEAMIMNREIN R M I V R E 0 1 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 7 0 892.48406 O15042;E7ET15 O15042 434 440 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.015285 71.949 By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.1 1.0594 9.4693 6 Median NaN NaN NaN 0 0 Median 1.2205 1.0539 NaN 1 0 Median 1.0741 1.1812 NaN 1 0 Median 1.0708 0.91449 NaN 1 0 Median 1.0798 1.1131 6.2488 2 0 Median 1.2271 1.0073 NaN 1 0 Median 28210000 13703000 14507000 0 0 0 1518000 712340 805700 8545200 4027300 4517900 870000 418660 451340 16567000 8229100 8337800 709760 315800 393960 24361 1515 25498 129147;129148;129149;129150;129151;129152 129981;129982;129983;129984 129982 4 MIEMFVR SFNGSKTNALNVSQKMIEMFVRTKHKIDKS NALNVSQKMIEMFVRTKHKIDKSHEFALVV K M I V R T 0 1 0 0 0 0 1 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 7 0 924.45613 M0R0I0;Q9NWV8;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R2I2;M0QYV1 M0R0I0 127 133 BABAM1 BRISC and BRCA1-A complex member 1 yes no 2 0.040222 44.973 By MS/MS By matching By matching 1 1 2 1.0862 1.122 16.654 4 Median 1.1345 1.1306 NaN 1 0 Median 1.4987 1.343 NaN 1 0 Median 0.9791 0.99807 15.48 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5416100 2471400 2944800 3294600 1440100 1854400 175420 65787 109640 1946100 965440 980710 0 0 0 0 0 0 0 0 0 24362 1427 25499 129153;129154;129155;129156 129985 129985 1 MIESLTK LKTTEMETIYDLGTKMIESLTKDKVQAGDV TIYDLGTKMIESLTKDKVQAGDVITIDKAT K M I T K D 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 1 0 0 0 0 0 7 0 820.43644 Q9Y230;M0R0Y3;X6R2L4 Q9Y230 178 184 RUVBL2 RuvB-like 2 yes no 2 0.016244 69.176 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.2179 1.0965 10.048 6 Median 1.1164 1.0543 NaN 1 0 Median 1.3291 1.1258 NaN 1 0 Median 1.0332 1.0177 6.8233 2 0 Median 1.3677 1.2231 NaN 1 0 Median 1.3287 1.2721 NaN 1 0 Median NaN NaN NaN 0 0 Median 35367000 15724000 19642000 4946200 2224700 2721500 14584000 6231700 8351900 9940100 4596300 5343700 3690900 1757900 1933000 2205800 913660 1292200 0 0 0 24363 4368 25500 129157;129158;129159;129160;129161;129162 129986;129987;129988;129989;129990 129987 5 MIETAQVDER QNKGIEELFLDLCKRMIETAQVDERAKGNG DLCKRMIETAQVDERAKGNGSSQPGTARRG R M I E R A 1 1 0 1 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1190.5601 Q9UL25 Q9UL25 180 189 RAB21 Ras-related protein Rab-21 yes yes 2 0.00038307 107.15 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1036 0.95505 24.409 5 Median 1.1036 1.0468 NaN 1 0 Median 1.1293 0.95505 NaN 1 0 Median 0.95165 0.90623 NaN 1 0 Median 1.1058 1.4919 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95661 0.77524 NaN 1 0 Median 26818000 12586000 14232000 12547000 6022800 6524700 9800600 4580400 5220200 3329900 1500600 1829400 384020 176820 207200 0 0 0 755720 305350 450370 24364 4320 25501 129163;129164;129165;129166;129167 129991;129992;129993;129994 129991 4 MIEVVCNDR ______________________________ ______________________________ - M I D R L 0 1 1 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 2 0 0 9 0 1134.5162 Q9BZL1;K7EQ43 Q9BZL1 1 9 UBL5 Ubiquitin-like protein 5 yes no 2 0.010786 63.565 By MS/MS 1 1.1798 0.95421 NaN 1 Median NaN NaN NaN 0 0 Median 1.1798 0.95421 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1942700 632020 1310700 0 0 0 1942700 632020 1310700 0 0 0 0 0 0 0 0 0 0 0 0 24365 3901 25502 129168 129995 129995 1 MIEYDPER AVKRQLRVRTIYESKMIEYDPERRLGIFWV RTIYESKMIEYDPERRLGIFWVSCEAGTYI K M I E R R 0 1 0 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 8 0 1051.4644 O60832;C9IYT0;H7C0M1;H7BZF2 O60832 204 211 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.011256 57.281 By MS/MS 1 0.71943 0.75173 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71943 0.75173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3247000 1809500 1437500 0 0 0 0 0 0 3247000 1809500 1437500 0 0 0 0 0 0 0 0 0 24366 1634 25503 129169 129996;129997 129997 2 MIEYDPERR AVKRQLRVRTIYESKMIEYDPERRLGIFWV TIYESKMIEYDPERRLGIFWVSCEAGTYIR K M I R R L 0 2 0 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 9 1 1207.5656 O60832;C9IYT0;H7C0M1;H7BZF2 O60832 204 212 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 0.051594 24.776 By MS/MS 1 0.19182 0.20718 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19182 0.20718 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7121500 5905200 1216300 0 0 0 0 0 0 7121500 5905200 1216300 0 0 0 0 0 0 0 0 0 24367 1634 25504 129170 129998 129998 1 MIFDVESMK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY VQDLIKMIFDVESMKKAMVEYEIDLQKMPL K M I M K K 0 0 0 1 0 0 1 0 0 1 0 1 2 1 0 1 0 0 0 1 0 0 9 0 1098.509 P09874 P09874 675 683 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.001536 80.438 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 6 8 2 1 1.1188 1.1098 10.773 17 Median 0.97284 0.96589 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0249 1.1019 12.468 6 0 Median 1.3212 1.1453 10.055 7 0 Median 0.9932 1.0335 12.839 2 0 Median 1.357 1.1498 NaN 1 0 Median 84386000 39839000 44547000 2366000 1285800 1080200 0 0 0 50035000 24485000 25549000 27682000 12094000 15588000 4124800 1909200 2215500 178530 64666 113860 24368 1922 25505;25506;25507 129171;129172;129173;129174;129175;129176;129177;129178;129179;129180;129181;129182;129183;129184;129185;129186;129187;129188 129999;130000;130001;130002;130003;130004;130005;130006;130007;130008 130003 708;709 10 MIFDVESMKK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY QDLIKMIFDVESMKKAMVEYEIDLQKMPLG K M I K K A 0 0 0 1 0 0 1 0 0 1 0 2 2 1 0 1 0 0 0 1 0 0 10 1 1226.6039 P09874 P09874 675 684 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 8.569E-05 120.15 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 2 21 19 5 5 1.1907 1.2418 26.459 55 Median 1.0275 1.0752 26.268 5 0 Median 1.3823 1.2558 18.165 2 0 Median 1.0571 1.2403 16.197 21 1 Median 1.3303 1.2597 16.268 18 0 Median 1.1973 1.3113 8.7068 4 1 Median 1.4165 1.2798 70.324 5 0 Median 867950000 411460000 456490000 43629000 23203000 20426000 6628200 2850200 3778000 652470000 316020000 336450000 119830000 49601000 70231000 35785000 15941000 19844000 9607500 3843100 5764400 24369 1922 25508;25509;25510 129189;129190;129191;129192;129193;129194;129195;129196;129197;129198;129199;129200;129201;129202;129203;129204;129205;129206;129207;129208;129209;129210;129211;129212;129213;129214;129215;129216;129217;129218;129219;129220;129221;129222;129223;129224;129225;129226;129227;129228;129229;129230;129231;129232;129233;129234;129235;129236;129237;129238;129239;129240;129241;129242;129243;129244;129245 130009;130010;130011;130012;130013;130014;130015;130016;130017;130018;130019;130020;130021;130022;130023;130024;130025;130026;130027;130028;130029;130030;130031;130032;130033;130034;130035;130036;130037;130038;130039;130040;130041;130042;130043;130044;130045;130046;130047;130048;130049;130050;130051;130052;130053;130054;130055;130056;130057;130058;130059;130060;130061;130062;130063;130064;130065;130066;130067;130068;130069;130070;130071 130034 708;709 63 MIFVGIK MEYLENPKKYIPGTKMIFVGIKKKEERADL KKYIPGTKMIFVGIKKKEERADLIAYLKK_ K M I I K K 0 0 0 0 0 0 0 1 0 2 0 1 1 1 0 0 0 0 0 1 0 0 7 0 806.47243 C9JFR7;P99999 C9JFR7 81 87 CYCS Cytochrome c yes no 2 0.014495 85.306 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1.5326 1.305 16.028 9 Median 1.4481 1.3143 23.17 3 0 Median 1.3906 1.1427 18.783 2 0 Median 1.5334 1.4508 1.2758 2 0 Median 1.5465 1.233 1.2109 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 435990000 175410000 260580000 168830000 70087000 98745000 72507000 28944000 43563000 134130000 52813000 81313000 60524000 23564000 36960000 0 0 0 0 0 0 24370 696 25511;25512 129246;129247;129248;129249;129250;129251;129252;129253;129254 130072;130073;130074;130075;130076;130077;130078;130079;130080;130081;130082;130083;130084;130085;130086;130087;130088;130089;130090 130079 248 19 MIFVGIKK MEYLENPKKYIPGTKMIFVGIKKKEERADL KYIPGTKMIFVGIKKKEERADLIAYLKK__ K M I K K K 0 0 0 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 0 1 0 0 8 1 934.56739 C9JFR7;P99999 C9JFR7 81 88 CYCS Cytochrome c yes no 2 0.011337 64.803 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.446 1.3172 18.804 8 Median 1.5077 1.412 3.2109 2 0 Median 1.446 1.2535 0.40118 2 0 Median 1.5016 1.5161 10.178 2 0 Median 1.2139 1.0182 23.26 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107810000 43038000 64775000 30771000 11529000 19242000 37532000 15736000 21796000 35206000 14016000 21190000 4303300 1757200 2546100 0 0 0 0 0 0 24371 696 25513;25514 129255;129256;129257;129258;129259;129260;129261;129262 130091;130092;130093;130094;130095;130096;130097;130098;130099;130100;130101;130102;130103 130099 248 13 MIGEFVSDRK EVAQWLRENPRLDKKMIGEFVSDRKNIDLL RLDKKMIGEFVSDRKNIDLLESFVSTFSFQ K M I R K N 0 1 0 1 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 10 1 1180.591 Q92538 Q92538 750 759 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 3 0.050657 24.853 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 391050 0 391050 0 0 0 391050 0 391050 0 0 0 0 0 0 0 0 0 0 0 0 24372 3533 25515 129263 130104 130104 1 MIGFSETAK EESNFPFIKICSPDKMIGFSETAKCQAMKK ICSPDKMIGFSETAKCQAMKKIFDDAYKSQ K M I A K C 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 9 0 982.47937 I3L0N3;P46459;I3L2G1 I3L0N3 568 576 NSF Vesicle-fusing ATPase yes no 2 0.018899 40.352 By MS/MS By matching 1 1 1.2108 1.0933 7.9476 2 Median 1.1076 1.0335 NaN 1 0 Median 1.3236 1.1565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12066000 5596500 6469100 5695900 2638600 3057300 6369700 2957900 3411800 0 0 0 0 0 0 0 0 0 0 0 0 24373 1272 25516 129264;129265 130105 130105 1 MIGGLFIYNHK ______________________________ ______________________________ - M I H K G 0 0 1 0 0 0 0 2 1 2 1 1 1 1 0 0 0 0 1 0 0 0 11 0 1291.6747 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8;C9JJD3;C9JPV8 A0A087WY71 1 11 AP2M1 AP-2 complex subunit mu yes no 3 9.6771E-05 71.349 By matching By MS/MS By matching 1 1 1 1.2051 1.1831 22.644 3 Median 0.94814 0.93482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2051 1.1831 NaN 1 0 Median 1.6509 1.4701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6725900 3118500 3607500 624760 336510 288250 0 0 0 5909500 2702000 3207400 191730 79902 111820 0 0 0 0 0 0 24374 78 25517 129266;129267;129268 130106;130107 130107 2 MIGGPILPSER QEYVDICDYAVGLSRMIGGPILPSERSGHA GLSRMIGGPILPSERSGHALIEQWNPVGLV R M I E R S 0 1 0 0 0 0 1 2 0 2 1 0 1 0 2 1 0 0 0 0 0 0 11 0 1168.6274 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0;H0YHM6;F8VVF2;A0A1B0GVU0 P49419 163 173 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.00048871 68.657 By MS/MS By MS/MS By MS/MS 2 2 1 1.0752 1.06 53.241 5 Median 0.61151 0.58338 21.946 2 0 Median 1.677 1.4699 46.226 2 0 Median 1.0752 1.0764 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79965000 42282000 37683000 56008000 32824000 23184000 18125000 6560800 11564000 5833300 2897500 2935700 0 0 0 0 0 0 0 0 0 24375 318 25518;25519 129269;129270;129271;129272;129273 130108;130109;130110;130111;130112;130113 130110 154 6 MIGMMLDR PDCGGSIEVMQSFLKMIGMMLDRKRDFELA VMQSFLKMIGMMLDRKRDFELAQAYLALFL K M I D R K 0 1 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 0 0 0 8 0 965.44966 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 823 830 WDR36 WD repeat-containing protein 36 yes no 2 0.0034121 97.798 By matching By MS/MS By matching 1 2 2 1.6624 1.3994 13.436 5 Median NaN NaN NaN 0 0 Median 1.5594 1.3154 NaN 1 0 Median 1.4773 1.5897 21.237 2 0 Median 1.6705 1.427 2.7636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8486300 3556500 4929800 0 0 0 1578900 607080 971810 6523200 2804900 3718300 384190 144520 239670 0 0 0 0 0 0 24376 188 25520 129274;129275;129276;129277;129278 130114;130115 130114 2 MIHGNPSGVDNAVSTWGGALR EDLELINKWAFQGERMIHGNPSGVDNAVST SGVDNAVSTWGGALRYHQGKISSLKRSPAL R M I L R Y 2 1 2 1 0 0 0 4 1 1 1 0 1 0 1 2 1 1 0 2 0 0 21 0 2138.0327 F5H8H2;Q03426;A0A1B0GWF3;A0A1B0GWC2 F5H8H2 143 163 MVK Mevalonate kinase yes no 3 5.9031E-12 69.122 By MS/MS 1 0.84114 0.83533 NaN 1 Median 0.84114 0.83533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7451200 3669900 3781300 7451200 3669900 3781300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24377 1049 25521 129279 130116 130116 1 MIHMSMQMGNEPPISLRR MKVKQLRNRADEDARMIHMSMQMGNEPPIS MSMQMGNEPPISLRRDLEHLMLLIGELYKK R M I R R D 0 2 1 0 0 1 1 1 1 2 1 0 4 0 2 2 0 0 0 0 0 0 18 1 2127.021 Q92621 Q92621 420 437 NUP205 Nuclear pore complex protein Nup205 yes yes 4 0.011235 20.939 By MS/MS 1 0.65449 0.82677 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65449 0.82677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3414900 1893700 1521200 0 0 0 0 0 0 3414900 1893700 1521200 0 0 0 0 0 0 0 0 0 24378 3547 25522 129280 130117 130117 1 MIIEEAK KNSRAVTIFIRGGNKMIIEEAKRSLHDALC IFIRGGNKMIIEEAKRSLHDALCVIRNLIR K M I A K R 1 0 0 0 0 0 2 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 7 0 832.43644 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 393 399 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.015644 70.912 By matching By MS/MS By matching By matching 1 2 1 1 1.1689 0.97782 34.754 5 Median 1.6249 1.5515 NaN 1 0 Median 1.1766 0.99966 3.1237 2 1 Median 0.94195 0.94539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71533 0.58306 NaN 1 0 Median 22725000 9619300 13105000 5746500 1827600 3918900 16212000 7374800 8837400 709520 389480 320050 0 0 0 0 0 0 56536 27385 29151 24379 2364 25523 129281;129282;129283;129284;129285 130118;130119 130118 2 MIIEEAKR KNSRAVTIFIRGGNKMIIEEAKRSLHDALC FIRGGNKMIIEEAKRSLHDALCVIRNLIRD K M I K R S 1 1 0 0 0 0 2 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 8 1 988.53755 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 393 400 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0042451 102.72 By MS/MS By MS/MS By matching 2 2 1 1.0935 1.0853 7.1182 5 Median 1.1041 1.1147 2.223 2 0 Median 1.1371 1.0364 6.5143 2 0 Median NaN NaN NaN 0 0 Median 1.0469 0.95989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31289000 14395000 16894000 10304000 4880700 5423700 20785000 9421200 11364000 0 0 0 199350 92565 106780 0 0 0 0 0 0 24380 2364 25524;25525 129286;129287;129288;129289;129290 130120;130121;130122;130123;130124;130125 130123 1083 6 MIINDPR EKRVPSNASWEQAMKMIINDPRYSALAKLS ASWEQAMKMIINDPRYSALAKLSEKKQAFN K M I P R Y 0 1 1 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 7 0 857.44292 O75400;A0A3F2YNY6;F5H578 O75400 421 427 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.024489 55.441 By MS/MS By MS/MS By MS/MS 2 1 1 0.89686 0.85521 9.2334 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82773 0.89315 5.8555 2 0 Median 1.0037 0.85349 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91484 0.74486 NaN 1 0 Median 15545000 7948000 7596500 0 0 0 0 0 0 10404000 5478300 4925800 3287700 1549000 1738700 0 0 0 1852800 920780 932010 24381 1670 25526 129291;129292;129293;129294 130126;130127;130128;130129;130130 130126 5 MIINEELMASLDQPTQTVVMHR MFELDLPTVHSIISKMIINEELMASLDQPT MASLDQPTQTVVMHRTEPTAQQNLALQLAE K M I H R T 1 1 1 1 0 2 2 0 1 2 2 0 3 0 1 1 2 0 0 2 0 0 22 0 2555.2546 Q99613;B5ME19 Q99613 825 846 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3 3.0959E-12 64.203 By MS/MS By MS/MS 1 2 1.0521 0.94511 3.9827 3 Median 0.97748 0.94511 NaN 1 0 Median 1.0558 0.91534 4.9891 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13725000 6785300 6940200 5760900 3026400 2734500 7964600 3759000 4205700 0 0 0 0 0 0 0 0 0 0 0 0 24382 3757 25527 129295;129296;129297 130131;130132;130133;130134;130135 130135 5 MIKETLPNVR GNDDDLTIPRAAINKMIKETLPNVRVANDA AAINKMIKETLPNVRVANDARELVVNCCTE K M I V R V 0 1 1 0 0 0 1 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 10 1 1199.6696 Q01658 Q01658 21 30 DR1 Protein Dr1 yes yes 3 0.022448 36.585 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24383 2689 25528 129298 130136 130136 1 MIKPFFHSLSEK LVVVDFSATWCGPCKMIKPFFHSLSEKYSN PCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ K M I E K Y 0 0 0 0 0 0 1 0 1 1 1 2 1 2 1 2 0 0 0 0 0 0 12 1 1462.7643 P10599 P10599 37 48 TXN Thioredoxin yes yes 2;3 1.2463E-08 169.99 By MS/MS By MS/MS By MS/MS 4 4 3 1.0878 1.0013 5.5015 11 Median 1.0382 0.97227 2.7954 4 0 Median 1.1433 0.99115 3.4902 4 0 Median 1.1129 1.1132 5.5668 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1517300000 716220000 801110000 688040000 327670000 360370000 708180000 329270000 378910000 121110000 59285000 61825000 0 0 0 0 0 0 0 0 0 24384 1942 25529;25530 129299;129300;129301;129302;129303;129304;129305;129306;129307;129308;129309 130137;130138;130139;130140;130141;130142;130143;130144;130145;130146;130147;130148;130149;130150;130151;130152;130153;130154;130155;130156;130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167;130168 130167 717 32 MIKPQTLASEK FGDKVNLLSVLEAAKMIKPQTLASEKK___ EAAKMIKPQTLASEKK______________ K M I E K K 1 0 0 0 0 1 1 0 0 1 1 2 1 0 1 1 1 0 0 0 0 0 11 1 1244.6799 Q9BRX8 Q9BRX8 218 228 FAM213A Redox-regulatory protein FAM213A yes yes 3 0.0093878 46.592 By MS/MS 1 0.42619 0.43406 NaN 1 Median 0.42619 0.43406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2538700 1694500 844250 2538700 1694500 844250 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24385 3807 25531 129310 130169 130169 1 MILEIMHK ISVHSTPEGCSSACKMILEIMHKEAKDTKT GCSSACKMILEIMHKEAKDTKTADEVPLKI K M I H K E 0 0 0 0 0 0 1 0 1 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 1013.5402 Q9NZI8 Q9NZI8 259 266 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.010771 70.912 By MS/MS By MS/MS By MS/MS 3 1 2 1.2533 1.2818 18.573 5 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2088 1.0319 6.0608 2 0 Median 1.2533 1.2818 NaN 1 0 Median 1.1271 0.93122 25.731 2 1 Median 20473000 9560500 10912000 0 0 0 0 0 0 0 0 0 3963500 1745300 2218200 9897000 4884300 5012700 6612400 2930900 3681500 24386 4188 25532;25533 129311;129312;129313;129314;129315;129316 130170;130171;130172;130173;130174;130175;130176;130177 130176 1897 8 MILEIMQK VTIHATPEGTSEACRMILEIMQKEADETKL GTSEACRMILEIMQKEADETKLAEEIPLKI R M I Q K E 0 0 0 0 0 1 1 0 0 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 1004.5399 F8W930;Q9Y6M1 F8W930 263 270 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.0062263 72.138 By MS/MS By matching 1 2 1.0911 0.96474 3.1553 3 Plateau 1.0285 0.96474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1096 0.93646 3.743 2 0 Median 13435000 6345900 7088700 12600000 5927300 6672500 0 0 0 0 0 0 0 0 0 0 0 0 834790 418590 416200 24387 1088 25534 129317;129318;129319 130178;130179 130179 2 MILELFSK KKLLPDDPYEKACQKMILELFSKVPSLVGS YEKACQKMILELFSKVPSLVGSFIRSQNKE K M I S K V 0 0 0 0 0 0 1 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 8 0 979.54124 P78417;Q5TA02;Q5TA01 P78417 115 122 GSTO1 Glutathione S-transferase omega-1 yes no 2 0.011309 63.21 By MS/MS By matching By MS/MS 3 3 1 1.3044 1.1237 16.707 7 Median 1.0532 0.97873 21.893 3 0 Median 1.4398 1.2161 10.622 3 0 Median 1.0139 0.96944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65313000 30979000 34334000 61599000 29109000 32490000 797750 335340 462420 2915800 1534000 1381800 0 0 0 0 0 0 0 0 0 24388 2646 25535;25536 129320;129321;129322;129323;129324;129325;129326 130180;130181;130182;130183;130184;130185;130186;130187 130183 1310 8 MILFAFGSALAQAR NLRPHRLQPDQLRAKMILFAFGSALAQARL KMILFAFGSALAQARLLYGNDAKVLEQPVV K M I A R L 4 1 0 0 0 1 0 1 0 1 2 0 1 2 0 1 0 0 0 0 0 0 14 0 1494.8017 Q9BZE1;S4R369;A6NHR2;H0Y4J2 Q9BZE1 313 326 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.0059169 53.683 By MS/MS 1 1.3705 1.1933 NaN 1 Median NaN NaN NaN 0 0 Median 1.3705 1.1933 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 759130 300810 458330 0 0 0 759130 300810 458330 0 0 0 0 0 0 0 0 0 0 0 0 24389 3897 25537 129327 130188 130188 1 MILIQDGSQNTNVDK GGETIKQLQERAGVKMILIQDGSQNTNVDK MILIQDGSQNTNVDKPLRIIGDPYKVQQAC K M I D K P 0 0 2 2 0 2 0 1 0 2 1 1 1 0 0 1 1 0 0 1 0 0 15 0 1674.8247 Q92945;A0A087WTP3;M0R0I5;M0QYH3 Q92945 267 281 KHSRP Far upstream element-binding protein 2 yes no 2 7.8453E-14 125.22 By MS/MS By MS/MS 1 4 0.98873 0.94267 13.917 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86179 0.94267 NaN 1 0 Median 1.1318 0.97703 15.973 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23561000 11869000 11693000 0 0 0 0 0 0 8807800 4695900 4112000 14753000 7172800 7580600 0 0 0 0 0 0 24390 3568 25538;25539 129328;129329;129330;129331;129332 130189;130190;130191;130192;130193 130192 1779 5 MILIQDGSQNTNVDKPLR GGETIKQLQERAGVKMILIQDGSQNTNVDK IQDGSQNTNVDKPLRIIGDPYKVQQACEMV K M I L R I 0 1 2 2 0 2 0 1 0 2 2 1 1 0 1 1 1 0 0 1 0 0 18 1 2041.0626 Q92945;A0A087WTP3;M0R0I5;M0QYH3 Q92945 267 284 KHSRP Far upstream element-binding protein 2 yes no 2;3 1.1255E-40 211.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 13 13 4 4 0.91847 0.91727 16.501 41 Median 0.81167 0.83513 25.205 4 1 Median 0.97645 0.97009 5.7888 3 0 Median 0.84821 0.90199 15.599 13 2 Median 1.0092 0.91727 21.255 13 1 Median 0.84583 0.89649 4.3409 4 1 Median 1.1434 0.92302 7.2145 4 0 Linear 1064200000 585180000 479020000 96242000 48943000 47299000 10156000 5031900 5123600 722450000 412240000 310200000 126010000 62781000 63227000 98907000 51654000 47254000 10441000 4524900 5916400 24391 3568 25540;25541 129333;129334;129335;129336;129337;129338;129339;129340;129341;129342;129343;129344;129345;129346;129347;129348;129349;129350;129351;129352;129353;129354;129355;129356;129357;129358;129359;129360;129361;129362;129363;129364;129365;129366;129367;129368;129369;129370;129371;129372;129373 130194;130195;130196;130197;130198;130199;130200;130201;130202;130203;130204;130205;130206;130207;130208;130209;130210;130211;130212;130213;130214;130215;130216;130217;130218;130219;130220;130221;130222;130223;130224;130225;130226;130227;130228;130229;130230;130231;130232;130233;130234;130235;130236;130237;130238;130239;130240;130241;130242;130243;130244;130245 130224 1779 52 MILLEVNNR ______________________________ ______________________________ - M I N R I 0 1 2 0 0 0 1 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1100.6012 O15144;C9JTV5;G5E9J0;G5E9S7 O15144 1 9 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 2 0.00031674 137.18 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.2782 1.1512 49.935 6 Median 1.0044 0.95839 18.058 2 0 Median 1.4633 1.2171 NaN 1 0 Median 1.4016 1.3644 NaN 1 0 Median 1.9915 1.661 95.11 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80027000 35473000 44554000 49332000 22865000 26467000 7156800 2909600 4247100 15143000 6649000 8493800 8396100 3049500 5346700 0 0 0 0 0 0 24392 1526 25542;25543 129374;129375;129376;129377;129378;129379 130246;130247;130248;130249;130250;130251;130252;130253;130254 130246 493 8 MILPEGIQR QAEAMKTSAFIAGAKMILPEGIQRENNKLY FIAGAKMILPEGIQRENNKLYEEVRIPYSE K M I Q R E 0 1 0 0 0 1 1 1 0 2 1 0 1 0 1 0 0 0 0 0 0 0 9 0 1055.5798 Q8N3C0 Q8N3C0 424 432 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00047799 122.13 By MS/MS By MS/MS By MS/MS 1 2 1 0.92509 0.8305 8.9016 4 Median 0.81182 0.79518 NaN 1 0 Median 1.0768 0.88565 2.9491 2 2 Median 0.68614 0.74117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32248000 16912000 15336000 11677000 6703000 4974300 16126000 7303700 8822200 4444900 2905700 1539200 0 0 0 0 0 0 0 0 0 24393 3366 25544 129380;129381;129382;129383 130255;130256;130257;130258 130255 4 MILTFEK EEEEEEPLDESSVKKMILTFEKRSYKNQEL LDESSVKKMILTFEKRSYKNQELRIKFPDN K M I E K R 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 7 0 880.47283 Q8WYA6;A0A087WUB9;A2A2P1 Q8WYA6 85 91 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.031276 49.358 By MS/MS By MS/MS By matching 1 1 1 1.0123 1.0125 9.2749 3 Median 1.0123 0.97631 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0117 1.0125 NaN 1 0 Median 1.356 1.1639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23866000 11524000 12342000 2408100 1170700 1237400 0 0 0 20387000 9906400 10481000 1070900 446690 624220 0 0 0 0 0 0 24394 28 25545 129384;129385;129386 130259;130260;130261 130260 3 MIMATNRPDTLDPALLRPGR LLNQMDGFDTLHRVKMIMATNRPDTLDPAL NRPDTLDPALLRPGRLDRKIHIDLPNEQAR K M I G R L 2 3 1 2 0 0 0 1 0 1 3 0 2 0 3 0 2 0 0 0 0 0 20 2 2237.1773 A0A087X2I1;P62333 A0A087X2I1 289 308 PSMC6 26S protease regulatory subunit 10B yes no 3;4 0.010643 21.803 By MS/MS By matching 2 2 0.67156 0.82359 16.862 4 Median 0.6385 0.77862 18.82 2 0 Median 0.70804 0.87328 19.162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43533000 25333000 18200000 32454000 19965000 12489000 11079000 5368200 5710900 0 0 0 0 0 0 0 0 0 0 0 0 24395 138 25546 129387;129388;129389;129390 130262;130263 130263 2 MIMDQEKQEGVSTK VTNLRLIESLFTIQKMIMDQEKQEGVSTKC KMIMDQEKQEGVSTKCCKKSIVRLVRNLSE K M I T K C 0 0 0 1 0 2 2 1 0 1 0 2 2 0 0 1 1 0 0 1 0 0 14 1 1622.7644 Q12789 Q12789 640 653 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 4.1608E-06 88.101 By matching By MS/MS 1 1 0.53217 0.58072 68.785 2 Median 0.34702 0.35705 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81612 0.94449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11998000 6652400 5345600 1359100 717830 641240 0 0 0 10639000 5934600 4704300 0 0 0 0 0 0 0 0 0 24396 2758 25547 129391;129392 130264;130265 130265 2 MIMQDKLEK IDREMLNLYIENEGKMIMQDKLEKERNDAK IENEGKMIMQDKLEKERNDAKNAVEEYVYE K M I E K E 0 0 0 1 0 1 1 0 0 1 1 2 2 0 0 0 0 0 0 0 0 0 9 1 1134.5777 P34932;A0A087WYC1;O95757;E9PDE8;Q92598;A0A0A0MSM0 P34932 604 612 HSPA4;HSPA4L;HSPH1 Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa no no 2 0.004469 102.51 By MS/MS By MS/MS 1 1 1.2606 1.2413 0.84689 2 Median 1.1995 1.2488 NaN 1 0 Median 1.3248 1.2339 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37464000 16671000 20793000 32914000 14826000 18089000 4550000 1845700 2704200 0 0 0 0 0 0 0 0 0 0 0 0 24397 2230;1790;3541 25548;25549 129393;129394 130266;130267 130267 571 2 MIMQDKLEKER IDREMLNLYIENEGKMIMQDKLEKERNDAK NEGKMIMQDKLEKERNDAKNAVEEYVYEMR K M I E R N 0 1 0 1 0 1 2 0 0 1 1 2 2 0 0 0 0 0 0 0 0 0 11 2 1419.7214 P34932;A0A087WYC1;O95757;E9PDE8;Q92598;A0A0A0MSM0 P34932 604 614 HSPA4;HSPA4L;HSPH1 Heat shock 70 kDa protein 4;Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa no no 3 0.0016956 46.592 By MS/MS 1 1.4119 1.6049 NaN 1 Median 1.4119 1.6049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3165500 1212900 1952600 3165500 1212900 1952600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24398 2230;1790;3541 25550 129395 130268;130269 130269 2 MIMSFEMK NRRDAERALKNLNGKMIMSFEMKLGWGKAV LKNLNGKMIMSFEMKLGWGKAVPIPPHPIY K M I M K L 0 0 0 0 0 0 1 0 0 1 0 1 3 1 0 1 0 0 0 0 0 0 8 0 1015.4541 O15042;E7ET15;H0Y8D9;E7EW00 O15042 342 349 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.046486 35.494 By MS/MS By matching By matching By matching 1 1 2 1 1.0515 1.0776 12.188 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0789 1.1671 NaN 1 0 Median 1.1747 1.0348 NaN 1 0 Median 1.0469 1.0925 1.9316 2 0 Median 0.98348 0.84959 NaN 1 0 Median 8935400 4046600 4888800 0 0 0 0 0 0 2818900 1278300 1540600 109180 56073 53107 5942100 2683700 3258400 65137 28458 36678 24399 1515 25551 129396;129397;129398;129399;129400 130270 130270 1 MINLSEPDTIDER DSLFKSLADGILLCKMINLSEPDTIDERAI CKMINLSEPDTIDERAINKKKLTPFTISEN K M I E R A 0 1 1 2 0 0 2 0 0 2 1 0 1 0 1 1 1 0 0 0 0 0 13 0 1531.7188 Q14651;C9JAM8 Q14651 168 180 PLS1 Plastin-1 yes no 2 0.00010464 130.94 By MS/MS By matching 1 1 1.1103 1.0061 10.244 2 Median 1.1421 1.0817 NaN 1 0 Median 1.0794 0.93584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18145000 7926800 10218000 15506000 6724400 8781800 2638800 1202400 1436500 0 0 0 0 0 0 0 0 0 0 0 0 24400 2884 25552 129401;129402 130271;130272 130272 2 MINLSVPDTIDER DDLFKAVGDGIVLCKMINLSVPDTIDERAI CKMINLSVPDTIDERAINKKKLTPFIIQEN K M I E R A 0 1 1 2 0 0 1 0 0 2 1 0 1 0 1 1 1 0 0 1 0 0 13 0 1501.7446 P13797;A0A0A0MSQ0;U3KQI3;P13796;Q5TBN3 P13797 169 181 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 7.5519E-07 147.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 3 1.0203 0.89616 10.492 13 Median 0.94913 0.87908 7.1921 3 0 Plateau 1.0801 0.92956 2.3203 4 0 Median 0.87746 0.90283 15.818 2 0 Median 1.0903 0.9117 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1862 1.0339 18.858 3 0 Plateau 599200000 298320000 300880000 355280000 178750000 176520000 222580000 108650000 113930000 17189000 8927400 8261500 2854900 1390700 1464200 0 0 0 1296200 597140 699100 24401 1995 25553;25554 129403;129404;129405;129406;129407;129408;129409;129410;129411;129412;129413;129414;129415 130273;130274;130275;130276;130277;130278;130279;130280;130281;130282;130283;130284;130285;130286 130278 788 14 MINTDLSR KAASLKSNYNLPMHKMINTDLSRILKSPEI YNLPMHKMINTDLSRILKSPEIQRALRAPR K M I S R I 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 8 0 948.46987 P36578;H3BM89 P36578 284 291 RPL4 60S ribosomal protein L4 yes no 2 1.5126E-26 166.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 4 3 1.2083 1.1781 25.732 12 Median 0.85876 0.83115 35.963 2 1 Median 1.1801 0.98918 NaN 1 0 Median 1.3847 1.3683 NaN 1 0 Median 1.4079 1.212 NaN 1 0 Median 1.1939 1.2201 15.022 4 1 Median 1.4927 1.2807 30.033 3 1 Median 163980000 75213000 88769000 36160000 17943000 18217000 37462000 17221000 20241000 10063000 4834100 5228400 15694000 6578900 9114800 45467000 21312000 24155000 19136000 7323600 11813000 24402 2260 25555;25556 129416;129417;129418;129419;129420;129421;129422;129423;129424;129425;129426;129427 130287;130288;130289;130290;130291;130292;130293;130294;130295;130296;130297;130298;130299;130300;130301;130302 130298 1010 16 MIPPTKPEIQAK QVKKAEPEPMREEEKMIPPTKPEIQAKAPS EEKMIPPTKPEIQAKAPSSLSDAVPQRADH K M I A K A 1 0 0 0 0 1 1 0 0 2 0 2 1 0 3 0 1 0 0 0 0 0 12 1 1351.7534 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 572 583 SUGP2 SURP and G-patch domain-containing protein 2 yes no 3 0.0096251 28.327 By MS/MS 1 0.57205 0.64069 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57205 0.64069 NaN 1 0 Median NaN NaN NaN 0 0 Median 3025500 2012500 1013000 0 0 0 0 0 0 0 0 0 0 0 0 3025500 2012500 1013000 0 0 0 24403 1437 25557 129428 130303 130303 1 MIQAAVQQR ADLGLEVEESTVYSRMIQAAVQQRDTHLTI STVYSRMIQAAVQQRDTHLTITPTVLGERH R M I Q R D 2 1 0 0 0 3 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1043.5546 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 354 362 TRPV1;SHPK Sedoheptulokinase yes no 2 0.0073909 68.422 By MS/MS 1 1.45 1.2642 NaN 1 Median NaN NaN NaN 0 0 Median 1.45 1.2642 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1057500 418630 638820 0 0 0 1057500 418630 638820 0 0 0 0 0 0 0 0 0 0 0 0 24404 219 25558 129429 130304 130304 1 MIQDGKGDVTITNDGATILK ADAIRTSLGPKGMDKMIQDGKGDVTITNDG KGDVTITNDGATILKQMQVLHPAARMLVEL K M I L K Q 1 0 1 3 0 1 0 3 0 3 1 2 1 0 0 0 3 0 0 1 0 0 20 1 2089.0725 P50991 P50991 60 79 CCT4 T-complex protein 1 subunit delta yes yes 2;3 1.2118E-59 228.51 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 7 5 2 2 1 2 1.1144 1.0443 39.494 19 Median 1.1144 1.0402 27.476 7 0 Median 1.1143 1.0443 28.627 5 0 Median 1.3596 1.4165 8.776 2 0 Median 1.0106 1.0102 27.345 2 0 Median 2.7076 2.8897 NaN 1 0 Median 0.66189 0.58213 0.27111 2 0 Median 355580000 159370000 196210000 263690000 118640000 145050000 17166000 7965100 9201000 56556000 25764000 30791000 7131200 3549900 3581200 8894000 2197200 6696800 2144600 1251700 892920 24405 2424 25559;25560 129430;129431;129432;129433;129434;129435;129436;129437;129438;129439;129440;129441;129442;129443;129444;129445;129446;129447;129448 130305;130306;130307;130308;130309;130310;130311;130312;130313;130314;130315;130316;130317;130318;130319;130320;130321 130313 1131 17 MIQIQENMAEQK LTADFVNYYFERNMRMIQIQENMAEQKNIK NMRMIQIQENMAEQKNIKDKLENEQEKLHV R M I Q K N 1 0 1 0 0 3 2 0 0 2 0 1 2 0 0 0 0 0 0 0 0 0 12 0 1461.6956 B4DG57;A0A0U1RRH6;O94880 B4DG57 345 356 PHF14 PHD finger protein 14 yes no 2 4.8065E-06 102.06 By MS/MS 2 1.2375 1.2811 25.164 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2375 1.2811 25.164 2 0 Median NaN NaN NaN 0 0 Median 16022000 7497900 8524000 0 0 0 0 0 0 0 0 0 0 0 0 16022000 7497900 8524000 0 0 0 24406 309 25561 129449;129450 130322;130323;130324 130324 3 MIQPSASGSLVGR KENIKNSSVPRRTLKMIQPSASGSLVGREN LKMIQPSASGSLVGRENELSAGLSKRKHRN K M I G R E 1 1 0 0 0 1 0 2 0 1 1 0 1 0 1 3 0 0 0 1 0 0 13 0 1301.6762 H7C608;E2QRF9;O75496;C9K0U5 H7C608 28 40 GMNN Geminin yes no 2 0.0012355 72.006 By MS/MS 1 0.26082 0.24395 NaN 1 Median 0.26082 0.24395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25174000 21253000 3920700 25174000 21253000 3920700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24407 832 25562 129451 130325 130325 1 MIQVYFPK PSGTLRKASWEERDRMIQVYFPKEGRKILT SWEERDRMIQVYFPKEGRKILTPIIFKEEN R M I P K E 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 1 1 0 0 8 0 1024.5416 G5E9W7;G5E9V5;P82650;H7C5L9 G5E9W7 151 158 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 0.016198 49.59 By MS/MS By matching 1 2 1.2003 1.0172 18.497 3 Median 0.92804 0.86598 NaN 1 0 Median 1.2987 1.1287 14.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5858300 2897100 2961200 4419600 2270700 2148900 1438700 626370 812290 0 0 0 0 0 0 0 0 0 0 0 0 24408 1130 25563 129452;129453;129454 130326 130326 1 MISAEAPVLFAK LARIKKIMKLDEDVKMISAEAPVLFAKAAQ DVKMISAEAPVLFAKAAQIFITELTLRAWI K M I A K A 3 0 0 0 0 0 1 0 0 1 1 1 1 1 1 1 0 0 0 1 0 0 12 0 1275.6897 Q5T6K5;Q5T6K7;E9PI99;Q13952;A0A0A0MT00 Q5T6K5 60 71 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.00062943 64.841 By MS/MS By matching 3 2 1.1117 0.93903 27.803 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98219 0.93903 31.494 3 0 Median 1.3229 1.1466 28.34 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30874000 19713000 11161000 0 0 0 0 0 0 29309000 19034000 10274000 1565400 678340 887020 0 0 0 0 0 0 24409 3091 25564 129455;129456;129457;129458;129459 130327;130328 130328 2 MISDAIPELK EKNLGIGKVSSFEEKMISDAIPELKASIKK SFEEKMISDAIPELKASIKKGEDFVKTLK_ K M I L K A 1 0 0 1 0 0 1 0 0 2 1 1 1 0 1 1 0 0 0 0 0 0 10 0 1115.5896 P40926;G3XAL0 P40926 315 324 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.00042214 74.92 By MS/MS By MS/MS By MS/MS 3 2 1 0.95162 0.86223 37.416 6 Median 0.91921 0.83104 26.374 3 0 Median 1.3681 1.1482 7.5332 2 0 Median 0.49051 0.47264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 202370000 102970000 99396000 137920000 70491000 67430000 40681000 18782000 21899000 23768000 13701000 10067000 0 0 0 0 0 0 0 0 0 24410 2292 25565;25566 129460;129461;129462;129463;129464;129465 130329;130330;130331;130332;130333;130334;130335;130336;130337;130338;130339;130340 130335 1046 12 MISEELVAASR YGPESLSEFTQWRVRMISEELVAASRTQVQ WRVRMISEELVAASRTQVQKANSPEKPPEA R M I S R T 2 1 0 0 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 1 0 0 11 0 1204.6122 Q9UFC0;F8WDB4 Q9UFC0 194 204 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.00015613 117.7 By MS/MS 3 0.98901 1.0682 17.848 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98901 1.0682 17.848 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63982000 31078000 32904000 0 0 0 0 0 0 63982000 31078000 32904000 0 0 0 0 0 0 0 0 0 24411 4258 25567;25568 129466;129467;129468 130341;130342;130343;130344;130345 130345 1909 5 MISEIDKEGTGK MRALGFEPKKEEIKKMISEIDKEGTGKMNF IKKMISEIDKEGTGKMNFGDFLTVMTQKMS K M I G K M 0 0 0 1 0 0 2 2 0 2 0 2 1 0 0 1 1 0 0 0 0 0 12 1 1306.6439 P41208 P41208 72 83 CETN2 Centrin-2 yes yes 3 0.031575 21.759 By MS/MS By MS/MS 1 1 1.1136 1.0614 18.334 2 Median NaN NaN NaN 0 0 Median 1.366 1.2083 NaN 1 0 Median 0.90774 0.93237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1537300 844560 692740 0 0 0 557890 241900 315990 979410 602660 376760 0 0 0 0 0 0 0 0 0 24412 2296 25569 129469;129470 130346;130347 130347 2 MISGMYLGEIVR VDEYSLNAGKQRYEKMISGMYLGEIVRNIL YEKMISGMYLGEIVRNILIDFTKKGFLFRG K M I V R N 0 1 0 0 0 0 1 2 0 2 1 0 2 0 0 1 0 0 1 1 0 0 12 0 1367.6941 P19367;E9PB90;P52789;P52790 P19367 744 755 HK1;HK2;HK3 Hexokinase-1;Hexokinase;Hexokinase-2;Hexokinase-3 no no 2 0.00060398 70.1 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.2855 1.1642 34.247 7 Median 1.1542 1.1177 5.7606 2 0 Median 1.6134 1.4587 20.949 3 0 Median NaN NaN NaN 0 0 Median 1.6184 1.4193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69101 0.5859 NaN 1 0 Median 25656000 11483000 14173000 14390000 6574300 7815200 10875000 4736700 6138600 0 0 0 251680 82175 169510 0 0 0 139550 89407 50145 24413 2064;908 25570;25571 129471;129472;129473;129474;129475;129476;129477 130348;130349;130350;130351 130349 330 4 MISGMYMGELVR IDMGSLNPGKQLFEKMISGMYMGELVRLIL FEKMISGMYMGELVRLILVKMAKEELLFGG K M I V R L 0 1 0 0 0 0 1 2 0 1 1 0 3 0 0 1 0 0 1 1 0 0 12 0 1385.6505 E9PB90;P52789 E9PB90 268 279 HK2 Hexokinase;Hexokinase-2 yes no 2 0.05125 43.512 By MS/MS 1 1.3347 1.3129 NaN 1 Median 1.3347 1.3129 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2335900 1027400 1308500 2335900 1027400 1308500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24414 908 25572 129478 130352 130352 1 MISKPADSQDVHELVLSK VGGKQAVFFVGQSARMISKPADSQDVHELV KPADSQDVHELVLSKEDFEKKEKNKEAIYS R M I S K E 1 0 0 2 0 1 1 0 1 1 2 2 1 0 1 3 0 0 0 2 0 0 18 1 1996.0299 A6NHR9 A6NHR9 252 269 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 1.8725E-06 70.96 By MS/MS By MS/MS 2 2 0.73665 0.79327 9.0878 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7145 0.82718 4.7177 2 0 Median 0.78565 0.73588 9.4179 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28464000 13975000 14489000 0 0 0 0 0 0 24879000 12091000 12789000 3584300 1884200 1700100 0 0 0 0 0 0 24415 518 25573;25574 129479;129480;129481;129482 130353;130354;130355;130356 130353 206 4 MISKQFHHQLR EIPYMAAHESDARRRMISKQFHHQLRVGER ARRRMISKQFHHQLRVGERQPLLGPPESMR R M I L R V 0 1 0 0 0 2 0 0 2 1 1 1 1 1 0 1 0 0 0 0 0 0 11 1 1423.7507 Q99613;B5ME19 Q99613 709 719 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3 0.064677 24.291 By MS/MS 1 0.83029 0.80255 NaN 1 Median NaN NaN NaN 0 0 Median 0.83029 0.80255 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 339170 182330 156840 0 0 0 339170 182330 156840 0 0 0 0 0 0 0 0 0 0 0 0 24416 3757 25575 129483 130357 130357 1 MISLSYSR LIIRLRHNVIKTGVRMISLSYSRISLADIA VIKTGVRMISLSYSRISLADIAQKLQLDSP R M I S R I 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 3 0 0 1 0 0 0 8 0 955.4797 O43242 O43242 409 416 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0011492 147.52 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.197 1.0498 18.912 6 Median 1.0406 1.0056 7.489 2 0 Median 1.197 1.0354 0.55312 2 0 Median 1.5451 1.6226 NaN 1 0 Median 1.2922 1.1015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58239000 26439000 31799000 35700000 16643000 19057000 19772000 8602500 11169000 2441900 1045000 1396900 324680 149260 175420 0 0 0 0 0 0 24417 1560 25576 129484;129485;129486;129487;129488;129489 130358;130359;130360;130361 130359 4 MISLTDTQK ______________________________ ______________________________ - M I Q K I 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 1 2 0 0 0 0 0 9 0 1035.527 Q9Y3E0;F5H6U7;F5GWD8;F5GXH6 Q9Y3E0 1 9 GOLT1B Vesicle transport protein GOT1B yes no 2 0.0050285 59.245 By MS/MS By matching 2 1 1.144 1.1356 9.5784 3 Median 1.2066 1.1695 4.1645 2 0 Median 1.1361 0.99872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5288800 2606600 2682200 4211300 2076200 2135100 1077500 530390 547120 0 0 0 0 0 0 0 0 0 0 0 0 24418 4425 25577 129490;129491;129492 130362 130362 1 MISSQVISQLR SFFGLPANIARSSQRMISSQVISQLRILGR SSQRMISSQVISQLRILGRSITAGSKFDRE R M I L R I 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 3 0 0 0 1 0 0 11 0 1260.686 Q8NCM8 Q8NCM8 4009 4019 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.0094358 72.643 By MS/MS 1 0.70498 0.68815 NaN 1 Median 0.70498 0.68815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14334000 6072500 8261300 14334000 6072500 8261300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24419 3418 25578 129493 130363 130363 0 MITAAYVPLPTYHNLFPDSMTATQLLVPSR IAAVNALHGRWFAGKMITAAYVPLPTYHNL FPDSMTATQLLVPSRR______________ K M I S R R 3 1 1 1 0 1 0 0 1 1 4 0 2 1 4 2 4 0 2 2 0 0 30 0 3346.7094 Q14498 Q14498 500 529 RBM39 RNA-binding protein 39 yes yes 3 0.044515 9.97 By matching By MS/MS 1 2 0.53555 0.54022 14.097 3 Plateau 0.50603 0.51313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44534 0.47299 18.794 2 0 Median NaN NaN NaN 0 0 Median 5403300 3714400 1688900 1529500 1030900 498600 0 0 0 0 0 0 0 0 0 3873900 2683500 1190300 0 0 0 24420 2879 25579 129494;129495;129496 130364 130364 1 MITEGGVSINHQQVTNPESVLIVGQHILK CRKANAIPDGPRGYRMITEGGVSINHQQVT TNPESVLIVGQHILKNGLSLLKIGKRNFYI R M I L K N 0 0 2 0 0 3 2 3 2 4 2 1 1 0 1 2 2 0 0 4 0 0 29 0 3140.6652 Q9Y2Z4 Q9Y2Z4 428 456 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 4 1.8164E-06 38.386 By matching By MS/MS By matching 1 1 1 0.91426 0.86697 4.7719 3 Median NaN NaN NaN 0 0 Median 0.91426 0.8018 NaN 1 0 Median 0.90068 0.86697 NaN 1 0 Median 0.9805 0.87427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20570000 10417000 10153000 0 0 0 932830 391970 540860 18150000 9375600 8774300 1487400 649050 838310 0 0 0 0 0 0 24421 4399 25580 129497;129498;129499 130365;130366 130365 2 MITGDSQETAVAIASR KEAVTTLIASGVSIKMITGDSQETAVAIAS ITGDSQETAVAIASRLGLYSKTSQSVSGEE K M I S R L 3 1 0 1 0 1 1 1 0 2 0 0 1 0 0 2 2 0 0 1 0 0 16 0 1648.809 H0Y9V7;B4E2Q0;P98194 H0Y9V7 522 537 ATP2C1 Calcium-transporting ATPase;Calcium-transporting ATPase type 2C member 1 yes no 2 2.2261E-07 83.314 By MS/MS 1 0.94036 0.92347 NaN 1 Median 0.94036 0.92347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473400 1427900 1045500 2473400 1427900 1045500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24422 614 25581 129500 130367 130367 1 MITGSMVPLLQVISR FLRHLWFLISSMSTRMITGSMVPLLQVISR MITGSMVPLLQVISRGSPMSFEDSSRIIPL R M I S R G 0 1 0 0 0 1 0 1 0 2 2 0 2 0 1 2 1 0 0 2 0 0 15 0 1643.9103 Q15386 Q15386 470 484 UBE3C Ubiquitin-protein ligase E3C yes yes 2 0.048135 23.376 By MS/MS By matching 1 1 0.95338 0.89958 6.969 2 Median 0.94546 0.94502 NaN 1 0 Median 0.96136 0.85632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1561900 766240 795650 1460700 715020 745720 101150 51217 49933 0 0 0 0 0 0 0 0 0 0 0 0 24423 2944 25582 129501;129502 130368 130368 1 MITMYGNR VSSPNGILLFRETSKMITMYGNRILTLGEV LFRETSKMITMYGNRILTLGEVPKDQVYAL K M I N R I 0 1 1 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 1 0 0 0 8 0 984.45211 E7ESC6;Q9UIA9;E5RIW1 E7ESC6 806 813 XPO7 Exportin-7 yes no 2 0.0079765 64.803 By MS/MS By MS/MS By matching 1 2 1 1.3543 1.2059 19.762 4 Median 1.0473 1.0322 NaN 1 0 Median 1.6137 1.4135 0.45339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1711 0.98004 NaN 1 0 Median 7773300 3101600 4671700 2214100 958530 1255600 4498200 1597000 2901200 0 0 0 0 0 0 0 0 0 1061000 546000 514990 24424 885 25583 129503;129504;129505;129506 130369;130370;130371 130369 3 MITSLSKDQQIGEK DNKVAVGELTDEDVKMITSLSKDQQIGEKI KMITSLSKDQQIGEKIFASIAPSIYGHEDI K M I E K I 0 0 0 1 0 2 1 1 0 2 1 2 1 0 0 2 1 0 0 0 0 0 14 1 1576.8131 P49736;H0Y8E6 P49736 463 476 MCM2 DNA replication licensing factor MCM2 yes no 3 0.0059548 28.283 By MS/MS By matching 1 1 1.1669 1.2351 15.026 2 Median 1.0551 1.1106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2905 1.3736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5807700 2894500 2913100 4776600 2495300 2281200 0 0 0 0 0 0 1031100 399200 631910 0 0 0 0 0 0 24425 2393 25584 129507;129508 130372 130372 1 MIVDPVEPHGEMK LSKKLIYFQLHRALKMIVDPVEPHGEMKFQ LKMIVDPVEPHGEMKFQWDLNAWTKSAEAF K M I M K F 0 0 0 1 0 0 2 1 1 1 0 1 2 0 2 0 0 0 0 2 0 0 13 0 1480.7054 Q13263;M0R0K9 Q13263 378 390 TRIM28 Transcription intermediary factor 1-beta yes no 2;3 3.8838E-07 109.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 7 8 2 0.77688 0.76417 33.523 28 Median 0.67615 0.63377 43.987 6 1 Median 0.86782 0.7586 26.372 5 0 Median 0.71913 0.76979 33.853 7 0 Median 0.95048 0.82235 37.883 8 2 Median 0.74682 0.77432 3.273 2 0 Median NaN NaN NaN 0 0 Median 244570000 140380000 104190000 62495000 38130000 24365000 38492000 19299000 19192000 101540000 59449000 42091000 21211000 11458000 9753100 20837000 12043000 8793400 0 0 0 24426 2802 25585;25586 129509;129510;129511;129512;129513;129514;129515;129516;129517;129518;129519;129520;129521;129522;129523;129524;129525;129526;129527;129528;129529;129530;129531;129532;129533;129534;129535;129536 130373;130374;130375;130376;130377;130378;130379;130380;130381;130382;130383;130384;130385;130386;130387;130388;130389;130390;130391;130392;130393 130381 1501 20 MIVMGHR FAQIHEMQDLGDKLRMIVMGHRRVHISRQL QDLGDKLRMIVMGHRRVHISRQLEVEPEEP R M I H R R 0 1 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 7 0 842.4255 K7EKE6;P36776;K7EJE8;K7EQF8 K7EKE6 92 98 LONP1 Lon protease homolog, mitochondrial yes no 2 0.040222 44.973 By MS/MS 1 1.5029 1.2724 NaN 1 Median NaN NaN NaN 0 0 Median 1.5029 1.2724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4240100 1703800 2536300 0 0 0 4240100 1703800 2536300 0 0 0 0 0 0 0 0 0 0 0 0 24427 1370 25587 129537 130394 130394 1 MIVTPQSNRPVMGIVQDTLTAVR LETRAEIQELAMVPRMIVTPQSNRPVMGIV RPVMGIVQDTLTAVRKFTKRDVFLERGEVM R M I V R K 1 2 1 1 0 2 0 1 0 2 1 0 2 0 2 1 3 0 0 4 0 0 23 1 2525.3458 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 524 546 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 5.5927E-08 47.392 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.60591 0.75596 27.838 5 Median 0.7069 0.75596 NaN 1 0 Median 0.56845 0.55518 8.8559 2 0 Median 0.60591 0.76541 NaN 1 0 Median 1.1874 1.0753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7620100 4209100 3411000 2827100 1482700 1344300 1790000 989940 800070 2914500 1698000 1216600 88527 38523 50005 0 0 0 0 0 0 24428 486 25588 129538;129539;129540;129541;129542 130395;130396;130397;130398 130397 4 MIWNAQK PTGDSKVVLPCNLLRMIWNAQKIFHINPRL VLPCNLLRMIWNAQKIFHINPRLPSDLHPI R M I Q K I 1 0 1 0 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 7 0 889.44801 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 986 992 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.033669 61.997 By MS/MS 1 0.32616 0.28928 NaN 1 Median NaN NaN NaN 0 0 Median 0.32616 0.28928 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4705900 4179800 526180 0 0 0 4705900 4179800 526180 0 0 0 0 0 0 0 0 0 0 0 0 24429 486 25589 129543 130399 130399 1 MIYASSK VFIFWAPESAPLKSKMIYASSKDAIKKKLT ESAPLKSKMIYASSKDAIKKKLTGIKHELQ K M I S K D 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 7 0 798.39458 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q9Y281;P60981;F6RFD5 P23528 115 121 CFL1;CFL2;DSTN Cofilin-1;Cofilin-2;Destrin no no 2 0.00777 88.029 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.9027 1.6304 8.1868 4 Median 1.6005 1.5124 NaN 1 0 Median 1.89 1.6171 NaN 1 0 Median 1.9155 1.8419 NaN 1 0 Median 2.0137 1.6439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23362000 8804100 14558000 8341000 3358700 4982300 12614000 4583400 8030800 2147700 795090 1352600 258900 66906 191990 0 0 0 0 0 0 24430 2118;2533;4378 25590 129544;129545;129546;129547 130400;130401;130402;130403;130404;130405;130406 130405 7 MIYASSKDAIK VFIFWAPESAPLKSKMIYASSKDAIKKKLT LKSKMIYASSKDAIKKKLTGIKHELQANCY K M I I K K 2 0 0 1 0 0 0 0 0 2 0 2 1 0 0 2 0 0 1 0 0 0 11 1 1225.6377 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q9Y281;P60981;F6RFD5 P23528 115 125 CFL1;CFL2;DSTN Cofilin-1;Cofilin-2;Destrin no no 2;3 0.0021162 43.897 By MS/MS By MS/MS 2 2 1.1319 1.0672 13.902 4 Median 1.2168 1.2234 11.625 2 0 Median 1.1225 0.9924 2.5944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9200200 4339900 4860400 5653300 2483300 3170000 3546900 1856600 1690400 0 0 0 0 0 0 0 0 0 0 0 0 24431 2118;2533;4378 25591 129548;129549;129550;129551 130407;130408;130409;130410 130410 4 MIYASSKDAIKK VFIFWAPESAPLKSKMIYASSKDAIKKKLT KSKMIYASSKDAIKKKLTGIKHELQANCYE K M I K K K 2 0 0 1 0 0 0 0 0 2 0 3 1 0 0 2 0 0 1 0 0 0 12 2 1353.7326 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;Q9Y281;P60981;F6RFD5 P23528 115 126 CFL1;CFL2;DSTN Cofilin-1;Cofilin-2;Destrin no no 3 0.0018489 40.475 By matching By MS/MS 1 1 1.1589 1.1456 2.9968 2 Median 1.0356 1.1215 NaN 1 0 Median 1.2967 1.1701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2317500 1101700 1215800 716850 333070 383780 1600700 768650 832010 0 0 0 0 0 0 0 0 0 0 0 0 24432 2118;2533;4378 25592 129552;129553 130411;130412 130411 2 MKDQGPDKENSGAIEASVK FSCPYKTTFEIEISRMKDQGPDKENSGAIE GPDKENSGAIEASVKLTELLDLYREDRGAK R M K V K L 2 0 1 2 0 1 2 2 0 1 0 3 1 0 1 2 0 0 0 1 0 0 19 2 2002.963 Q69YN4 Q69YN4 366 384 KIAA1429 Protein virilizer homolog yes yes 3 0.07029 8.3901 By matching By MS/MS 1 1 0.77975 0.84496 8.9534 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77697 0.90018 NaN 1 0 Median 0.78254 0.79312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466800 2197300 2269500 0 0 0 0 0 0 3385600 1551800 1833800 1081200 645450 435800 0 0 0 0 0 0 24433 3130 25593 129554;129555 130413 130413 1 MKDREALFNEFVAAAR AAKHAKDSRFKAIEKMKDREALFNEFVAAA KDREALFNEFVAAARKKEKEDSKTRGEKIK K M K A R K 4 2 1 1 0 0 2 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 16 2 1866.9411 O14776;G3V220 O14776 766 781 TCERG1 Transcription elongation regulator 1 yes no 3 0.0001556 46.319 By MS/MS 2 0.93476 1.0236 3.4657 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93476 1.0236 3.4657 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14803000 7252900 7549900 0 0 0 0 0 0 14803000 7252900 7549900 0 0 0 0 0 0 0 0 0 24434 1494 25594 129556;129557 130414;130415 130415 2 MKDSYIEVLLPLGSEPELR HSFLAKSQDGLPPRRMKDSYIEVLLPLGSE YIEVLLPLGSEPELREKYLTVQNTVRFGRI R M K L R E 0 1 0 1 0 0 3 1 0 1 4 1 1 0 2 2 0 0 1 1 0 0 19 1 2188.145 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 83 101 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2;3 4.0749E-06 60.448 By MS/MS By MS/MS 4 2 0.84559 0.78932 15.849 6 Median NaN NaN NaN 0 0 Median 0.94759 0.87481 10.12 4 0 Median 0.65144 0.65937 9.804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8426600 4526000 3900700 0 0 0 4761200 2328700 2432500 3665400 2197300 1468100 0 0 0 0 0 0 0 0 0 24435 4400 25595 129558;129559;129560;129561;129562;129563 130416;130417 130416 2 MKDTDSEEEIREAFR GTIDFPEFLTMMARKMKDTDSEEEIREAFR MKDTDSEEEIREAFRVFDKDGNGYISAAEL K M K F R V 1 2 0 2 0 0 4 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 15 2 1854.8418 P0DP25;P0DP24;P0DP23;A0A590UK56;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 77 91 CALM2;CALM1 yes no 3;4 0.00043981 40.552 By MS/MS 2 0.82553 0.98992 4.222 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82553 0.98992 4.222 2 0 Median NaN NaN NaN 0 0 Median 6904200 3781700 3122500 0 0 0 0 0 0 0 0 0 0 0 0 6904200 3781700 3122500 0 0 0 24436 1931 25596 129564;129565 130418;130419;130420 130419 3 MKEALLSIGK CVDDHMHLIPTMTKKMKEALLSIGK_____ TMTKKMKEALLSIGK_______________ K M K G K - 1 0 0 0 0 0 1 1 0 1 2 2 1 0 0 1 0 0 0 0 0 0 10 1 1088.6264 Q96C01;E7EQY1 Q96C01 129 138 FAM136A Protein FAM136A yes no 2 0.011761 71.349 By MS/MS 1 0.52083 0.45151 NaN 1 Median NaN NaN NaN 0 0 Median 0.52083 0.45151 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6317500 3970200 2347300 0 0 0 6317500 3970200 2347300 0 0 0 0 0 0 0 0 0 0 0 0 24437 3612 25597 129566 130421 130421 1 MKEEVPTALVEAHVR VASAAAKSALEEFSKMKEEVPTALVEAHVR MKEEVPTALVEAHVRKVEEAAKVTGKADPA K M K V R K 2 1 0 0 0 0 3 0 1 0 1 1 1 0 1 0 1 0 0 3 0 0 15 1 1707.8978 Q8TAQ2;F8VXC8 Q8TAQ2 703 717 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3;4 3.8166E-10 160.15 By matching By MS/MS By MS/MS By MS/MS By matching 1 7 8 3 2 0.8209 0.91261 17.073 21 Median 1.1356 1.1277 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68731 0.78112 13.955 7 0 Median 0.99593 0.95928 15.043 8 0 Median 0.8078 0.91603 11.025 3 0 Median 0.90285 0.78747 29.526 2 0 Median 551600000 306320000 245270000 4264200 1988600 2275600 0 0 0 476800000 269460000 207340000 49810000 23553000 26257000 16918000 9476600 7441600 3803800 1843900 1959800 24438 3455 25598;25599 129567;129568;129569;129570;129571;129572;129573;129574;129575;129576;129577;129578;129579;129580;129581;129582;129583;129584;129585;129586;129587 130422;130423;130424;130425;130426;130427;130428;130429;130430;130431;130432;130433;130434;130435;130436;130437;130438;130439;130440;130441;130442;130443;130444;130445;130446;130447;130448;130449;130450;130451;130452 130422 1732 31 MKEIAEAYLGK KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K M K G K T 2 0 0 0 0 0 2 1 0 1 1 2 1 0 0 0 0 0 1 0 0 0 11 1 1251.6533 P11142;E9PKE3;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 P11142 127 137 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 0.00017981 109.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 9 5 7 7 6 1.1513 1.1266 37.124 47 Median 1.1892 1.0955 16.318 13 0 Median 1.2221 1.1821 27.372 9 0 Median 1.0837 1.204 13.616 5 0 Median 1.219 1.1256 50.474 7 0 Median 1.0531 1.1584 41.853 7 0 Median 1.2016 1.0644 63.262 6 0 Median 1792800000 819670000 973180000 947300000 429550000 517740000 267770000 115180000 152580000 358230000 170980000 187240000 42033000 18861000 23173000 150560000 72036000 78521000 26962000 13050000 13912000 24439 1950 25600;25601 129588;129589;129590;129591;129592;129593;129594;129595;129596;129597;129598;129599;129600;129601;129602;129603;129604;129605;129606;129607;129608;129609;129610;129611;129612;129613;129614;129615;129616;129617;129618;129619;129620;129621;129622;129623;129624;129625;129626;129627;129628;129629;129630;129631;129632;129633;129634 130453;130454;130455;130456;130457;130458;130459;130460;130461;130462;130463;130464;130465;130466;130467;130468;130469;130470;130471;130472;130473;130474;130475;130476;130477;130478;130479;130480;130481;130482;130483;130484;130485;130486;130487;130488;130489;130490;130491;130492;130493;130494;130495;130496;130497;130498;130499 130471 728 46 MKEIAEAYLGYPVTNAVITVPAYFNDSQR KAFYPEEISSMVLTKMKEIAEAYLGYPVTN NAVITVPAYFNDSQRQATKDAGVIAGLNVL K M K Q R Q 4 1 2 1 0 1 2 1 0 2 1 1 1 1 2 1 2 0 3 3 0 0 29 1 3259.6224 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 128 156 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 1.3227E-40 102.03 By MS/MS By MS/MS By matching 2 2 2 0.83833 0.82947 8.4603 6 Median 0.9122 0.91395 7.2401 2 0 Median 0.84386 0.77544 4.2814 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77286 0.82947 3.7546 2 0 Median NaN NaN NaN 0 0 Median 65685000 31080000 34605000 49768000 23918000 25850000 12263000 5426000 6837300 0 0 0 0 0 0 3653500 1735700 1917800 0 0 0 24440 278 25602;25603 129635;129636;129637;129638;129639;129640 130500;130501;130502;130503;130504;130505;130506;130507;130508 130504 136 9 MKELGVSTNANYK IVIWSATNMKWIEAKMKELGVSTNANYKIT AKMKELGVSTNANYKITFMLDSAAMITVHT K M K Y K I 1 0 2 0 0 0 1 1 0 0 1 2 1 0 0 1 1 0 1 1 0 0 13 1 1453.7235 Q8WVY7 Q8WVY7 194 206 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 3 0.00070793 48.659 By MS/MS By matching By matching 1 1 1 1.1638 1.0859 21.806 3 Median 1.1638 1.0859 NaN 1 0 Median 1.4761 1.3411 NaN 1 0 Median 0.79575 0.86714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7686700 3685700 4001100 5077100 2326200 2750800 997450 406000 591450 1612200 953410 658800 0 0 0 0 0 0 0 0 0 24441 3504 25604 129641;129642;129643 130509;130510 130509 2 MKELSQDSTGR GKEEIDSILNKVEERMKELSQDSTGRVKRL VEERMKELSQDSTGRVKRLPPIVRGGAIDR R M K G R V 0 1 0 1 0 1 1 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 11 1 1250.5925 P52788;H7C2R7 P52788 97 107 SMS Spermine synthase yes no 2;3 0.0028272 66.435 By MS/MS By MS/MS 2 2 1.0725 1.0935 9.7829 4 Median 1.0725 1.1457 2.7049 2 0 Median 1.068 0.99656 9.2372 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3759700 1913200 1846500 1389100 668740 720360 2370600 1244500 1126100 0 0 0 0 0 0 0 0 0 0 0 0 24442 2459 25605 129644;129645;129646;129647 130511;130512;130513;130514 130512 4 MKETAEAYLGK KTFAPEEISAMVLTKMKETAEAYLGKKVTH VLTKMKETAEAYLGKKVTHAVVTVPAYFND K M K G K K 2 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 1 0 1 0 0 0 11 1 1239.6169 P11021 P11021 153 163 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.00083175 111.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 3 1.2117 1.1665 32.07 10 Median 1.2117 1.1927 8.1138 2 0 Median 1.0221 0.94001 18.375 4 1 Median 1.3774 1.5419 NaN 1 0 Median 1.262 1.2328 54.22 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110910000 50116000 60799000 17874000 7903700 9970600 76659000 35664000 40995000 7882300 2563700 5318600 8499000 3984100 4514900 0 0 0 0 0 0 24443 1948 25606 129648;129649;129650;129651;129652;129653;129654;129655;129656;129657 130515;130516;130517;130518;130519;130520;130521;130522;130523;130524;130525;130526;130527;130528 130523 14 MKETAEAYLGKK KTFAPEEISAMVLTKMKETAEAYLGKKVTH LTKMKETAEAYLGKKVTHAVVTVPAYFNDA K M K K K V 2 0 0 0 0 0 2 1 0 0 1 3 1 0 0 0 1 0 1 0 0 0 12 2 1367.7119 P11021 P11021 153 164 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 1.1019E-06 110.9 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.2486 1.1989 47.081 7 Median 0.99327 0.9705 28.392 2 0 Median 1.2486 1.1989 12.839 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.055 3.4059 NaN 1 0 Median 1.7791 1.933 NaN 1 0 Median 46023000 20143000 25880000 23181000 10543000 12638000 16737000 7817600 8919800 0 0 0 0 0 0 4320700 1147500 3173100 1783800 635120 1148700 24444 1948 25607 129658;129659;129660;129661;129662;129663;129664 130529;130530;130531;130532;130533;130534;130535 130533 7 MKETAENYLGHTAK KLYSPSQIGAFVLMKMKETAENYLGHTAKN KMKETAENYLGHTAKNAVITVPAYFNDSQR K M K A K N 2 0 1 0 0 0 2 1 1 0 1 2 1 0 0 0 2 0 1 0 0 0 14 1 1591.7664 P38646 P38646 174 187 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3;4 2.1212E-10 174.4 By MS/MS By MS/MS By MS/MS 5 4 1 1.3335 1.2587 19.895 8 Median 1.1916 1.1633 28.007 4 0 Median 1.3851 1.2939 4.4638 3 0 Median NaN NaN NaN 0 0 Median 1.3497 1.2463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 231400000 82407000 148990000 94163000 34903000 59260000 134300000 46363000 87941000 0 0 0 2928700 1141200 1787400 0 0 0 0 0 0 24445 2277 25608;25609 129665;129666;129667;129668;129669;129670;129671;129672;129673;129674 130536;130537;130538;130539;130540;130541;130542;130543;130544;130545;130546;130547;130548 130545 1029 13 MKETAVFINISR TPATEGLCNKDFFQKMKETAVFINISRGDV FQKMKETAVFINISRGDVVNQDDLYQALAS K M K S R G 1 1 1 0 0 0 1 0 0 2 0 1 1 1 0 1 1 0 0 1 0 0 12 1 1407.7544 Q9UBQ7;U3KQ56 Q9UBQ7 234 245 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 2;3 0.0023143 93.058 By MS/MS 2 0.95292 0.9558 35.41 2 Median 0.95292 0.9558 35.41 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21963000 9447300 12515000 21963000 9447300 12515000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24446 4243 25610 129675;129676 130549;130550 130550 2 MKETIMNQEK ______________________________ ______________________________ - M K E K L 0 0 1 0 0 1 2 0 0 1 0 2 2 0 0 0 1 0 0 0 0 0 10 1 1250.5999 D6RDG3 D6RDG3 1 10 BTF3 Transcription factor BTF3 yes yes 2;3 0.0018956 77.677 By matching By MS/MS By matching 2 2 1 1.0725 1.0782 16.627 5 Median 1.0887 1.0932 1.955 2 0 Median 0.91592 0.80992 1.2685 2 0 Median NaN NaN NaN 0 0 Median 1.2266 1.1025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14329000 7058500 7270400 6260900 2897900 3363000 7603700 3951600 3652100 0 0 0 464330 209020 255310 0 0 0 0 0 0 24447 821 25611 129677;129678;129679;129680;129681 130551;130552;130553 130553 3 MKEYGEQIDPSTHR SEAHLTELLEEICDRMKEYGEQIDPSTHRK RMKEYGEQIDPSTHRKNYVRVVGRNGESSE R M K H R K 0 1 0 1 0 1 2 1 1 1 0 1 1 0 1 1 1 0 1 0 0 0 14 1 1689.7781 F8W031;F8VXJ7;Q9Y2B0;F8W1K5 F8W031 89 102 CNPY2 Protein canopy homolog 2 yes no 3;4 0.0016007 37.657 By MS/MS By MS/MS 2 2 0.97929 0.91581 13.322 4 Median 0.85684 0.85 3.7131 2 0 Median 1.1768 1.0382 10.899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6712600 3129000 3583600 3564000 1718800 1845200 3148600 1410200 1738400 0 0 0 0 0 0 0 0 0 0 0 0 24448 1078 25612 129682;129683;129684;129685 130554;130555;130556;130557;130558 130557 4 MKFNPFVTSDR ______________________________ ______________________________ - M K D R S 0 1 1 1 0 0 0 0 0 0 0 1 1 2 1 1 1 0 0 1 0 0 11 1 1340.6547 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;J3KSS0;E5RHH1 P61254 1 11 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2;3 5.0768E-05 108.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 3 2 2 1 0.97559 0.99046 18.866 16 Median 0.93992 0.95186 11.499 8 1 Median 1.1167 0.98524 21.164 3 0 Median 1.1433 1.1822 28.62 2 1 Median 1.0737 0.95042 6.5968 2 1 Median 1.3234 1.4941 NaN 1 0 Median NaN NaN NaN 0 0 Median 133010000 66057000 66956000 101950000 52770000 49179000 8786500 4254300 4532200 9567600 3854800 5712800 2642200 1224400 1417800 10067000 3953400 6114100 0 0 0 24449 2554 25613;25614 129686;129687;129688;129689;129690;129691;129692;129693;129694;129695;129696;129697;129698;129699;129700;129701 130559;130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570;130571;130572;130573;130574;130575;130576;130577 130560 1231 19 MKGDVDVSLPK KISMPEVDLNLKGPKMKGDVDVSLPKVEGD KGPKMKGDVDVSLPKVEGDLKGPEVDIKGP K M K P K V 0 0 0 2 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 2 0 0 11 1 1187.622 Q09666 Q09666 4143 4153 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00080914 79.659 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.98813 1.0208 4.8067 4 Median 0.94742 1.0313 NaN 1 0 Median 1.0567 1.0104 NaN 1 0 Median 0.98558 1.1159 NaN 1 0 Median 0.99069 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109040000 48392000 60652000 26369000 13609000 12760000 19636000 10543000 9093100 34552000 10464000 24088000 28487000 13777000 14711000 0 0 0 0 0 0 24450 2749 25615 129702;129703;129704;129705;129706 130578;130579;130580;130581;130582 130582 5 MKGDVVVSLPK KISMPDFDLNLKGPKMKGDVVVSLPKVEGD KGPKMKGDVVVSLPKVEGDLKGPEVDIKGP K M K P K V 0 0 0 1 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 3 0 0 11 1 1171.6635 Q09666 Q09666 3685 3695 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0012138 79.659 By MS/MS By MS/MS 1 1 1.0025 1.0763 3.1893 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9702 1.1009 NaN 1 0 Median 1.0358 1.0523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11694000 6275400 5418500 0 0 0 0 0 0 7067800 4052800 3015000 4626100 2222500 2403500 0 0 0 0 0 0 24451 2749 25616 129707;129708 130583;130584 130584 1462 2 MKGDYDVTVPK KISIPDVGLHLKGPKMKGDYDVTVPKVEGE KGPKMKGDYDVTVPKVEGEIKAPDVDIKGP K M K P K V 0 0 0 2 0 0 0 1 0 0 0 2 1 0 1 0 1 0 1 2 0 0 11 1 1251.6169 Q09666 Q09666 1465 1475 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00086492 93.839 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 4 1 1.0425 1.0591 31.415 11 Median 1.4176 1.4627 41.72 2 0 Median 0.82854 0.7915 6.2746 2 0 Median 1.1062 1.2542 3.4691 2 0 Median 0.99918 0.97641 4.4098 4 0 Median NaN NaN NaN 0 0 Median 2.2421 2.0008 NaN 1 0 Median 84407000 42472000 41935000 11723000 5753200 5969400 27873000 15072000 12802000 22271000 10757000 11514000 21574000 10576000 10998000 0 0 0 966290 314590 651690 24452 2749 25617;25618 129709;129710;129711;129712;129713;129714;129715;129716;129717;129718;129719 130585;130586;130587;130588;130589;130590;130591;130592;130593;130594;130595;130596;130597 130592 1463 12 MKGDYFR IPNATQPESKVFYLKMKGDYFRYLSEVASG ESKVFYLKMKGDYFRYLSEVASGDNKQTTV K M K F R Y 0 1 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 7 1 915.42727 P27348;E9PG15;P31946 P31946 123 129 YWHAQ;YWHAB 14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed no no 2 0.010212 122.98 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.2209 1.1988 12.144 5 Median 1.2209 1.2679 NaN 1 0 Median 1.2208 1.1254 NaN 1 0 Median 1.1379 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4383 1.5218 NaN 1 0 Median 1.2811 1.147 NaN 1 0 Median 111880000 48125000 63750000 65773000 28123000 37650000 14356000 5641800 8714400 24832000 11782000 13050000 0 0 0 6116300 2274600 3841800 797560 304360 493200 24453 2210;2152 25619 129720;129721;129722;129723;129724 130598;130599;130600 130598 3 MKGDYYR IPNASQAESKVFYLKMKGDYYRYLAEVAAG ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV K M K Y R Y 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 2 0 0 0 7 1 931.42219 P63104;E7EX29;E7ESK7;B0AZS6;B7Z2E6;H0YB80;P31947;P61981;Q04917;A2IDB2 P63104 121 127 YWHAZ;SFN;YWHAG;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 2 0.0093057 60.961 By MS/MS By matching 1 1 1.3754 1.4251 5.8848 2 Median 1.4147 1.4856 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3371 1.367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4983400 2013500 2969900 4133300 1589700 2543600 0 0 0 850100 423740 426370 0 0 0 0 0 0 0 0 0 24454 2618;2714;2566;2211 25620 129725;129726 130601 130601 1 MKGEAEDILETEK LTYQYDLGYGTLLERMKGEAEDILETEKSK ERMKGEAEDILETEKSKLQLPRGMITFESI R M K E K S 1 0 0 1 0 0 4 1 0 1 1 2 1 0 0 0 1 0 0 0 0 0 13 1 1491.7127 Q9HBL7 Q9HBL7 106 118 PLGRKT Plasminogen receptor (KT) yes yes 3 0.0014695 40.066 By MS/MS By MS/MS By MS/MS 1 1 1 1.1866 1.2154 26.092 3 Median 0.82746 0.82985 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1866 1.2154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5933 1.3669 NaN 1 0 Median 7023600 3177100 3846600 3484800 1689900 1794900 0 0 0 1872000 915250 956710 0 0 0 0 0 0 1666900 571920 1095000 24455 4020 25621 129727;129728;129729 130602;130603;130604;130605 130602 4 MKGEVDVSLANVEGDLKGPALDIK KISMPDLDLNLKGPKMKGEVDVSLANVEGD ANVEGDLKGPALDIKGPKIDVDAPDIDIHG K M K I K G 2 0 1 3 0 0 2 3 0 1 3 3 1 0 1 1 0 0 0 3 0 0 24 2 2497.3098 Q09666 Q09666 3233 3256 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0018877 25.803 By MS/MS 1 0.9985 1.0401 NaN 1 Median NaN NaN NaN 0 0 Median 0.9985 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2621400 1176300 1445200 0 0 0 2621400 1176300 1445200 0 0 0 0 0 0 0 0 0 0 0 0 24456 2749 25622 129730 130606 130606 1 MKGLEEPEMDPK RYNVLGAETVLNQMRMKGLEEPEMDPKSRD QMRMKGLEEPEMDPKSRDLLVQQASQCLSK R M K P K S 0 0 0 1 0 0 3 1 0 0 1 2 2 0 2 0 0 0 0 0 0 0 12 1 1402.6472 Q1KMD3;H3BQZ7 Q1KMD3 495 506 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.002877 69.261 By MS/MS 1 0.74535 0.83401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74535 0.83401 NaN 1 0 Median NaN NaN NaN 0 0 Median 21054000 10747000 10307000 0 0 0 0 0 0 0 0 0 0 0 0 21054000 10747000 10307000 0 0 0 24457 3002 25623 129731 130607 130607 1 MKGYPHWPAR ______________________________ LIFAKMKGYPHWPARVDEVPDGAVKPPTNK K M K A R V 1 1 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 1 0 0 0 10 1 1241.6128 Q7Z4V5;M0R0J3;P51858;O75475;Q9Y3E1;H3BPQ6 O75475 15 24 HDGFRP2;HDGF;PSIP1;HDGFRP3 Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor-related protein 3 no no 3 0.00023145 102.61 By matching By MS/MS By MS/MS By matching By matching 1 3 7 3 1 0.80116 0.79436 28.376 14 Median 0.77563 0.83056 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71079 0.72019 15.306 3 0 Median 0.91849 0.80193 30.484 6 0 Median 0.74565 0.8041 21.127 3 0 Median 0.52754 0.46158 NaN 1 0 Median 24833000 13392000 11441000 2131600 1264200 867490 0 0 0 6595900 3618000 2977900 10647000 5212600 5434800 4441500 2587800 1853700 1016500 709210 307270 24458 1674;2444;3248;4426 25624;25625 129732;129733;129734;129735;129736;129737;129738;129739;129740;129741;129742;129743;129744;129745;129746 130608;130609;130610;130611;130612;130613;130614;130615;130616;130617 130613 536 10 MKHYEVEILDAK ______________________________ ______________________________ - M K A K T 1 0 0 1 0 0 2 0 1 1 1 2 1 0 0 0 0 0 1 1 0 0 12 1 1474.749 Q9NZ01;M0R3C3 Q9NZ01 1 12 TECR Very-long-chain enoyl-CoA reductase yes no 3 0.0001225 80.312 By MS/MS By MS/MS 2 3 1.1118 1.0632 12.379 5 Median 0.90176 0.98194 7.0962 2 0 Median 1.2641 1.2091 9.1539 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103750000 45243000 58504000 40301000 18089000 22212000 63446000 27154000 36292000 0 0 0 0 0 0 0 0 0 0 0 0 24459 4181 25626;25627 129747;129748;129749;129750;129751 130618;130619;130620;130621;130622;130623;130624 130622 1894 7 MKIDPEAFITR LVAVQSGLWPALLARMKIDPEAFITRHLDQ LLARMKIDPEAFITRHLDQIIPRMTTQSPL R M K T R H 1 1 0 1 0 0 1 0 0 2 0 1 1 1 1 0 1 0 0 0 0 0 11 1 1319.6908 Q92616 Q92616 694 704 GCN1L1 Translational activator GCN1 yes yes 3 0.0037735 38.021 By MS/MS 1 1.0429 1.0673 NaN 1 Median 1.0429 1.0673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1786500 873680 912790 1786500 873680 912790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24460 3544 25628 129752 130625 130625 1 MKLDYILGLK LLRRLVRIGVLDEGKMKLDYILGLKIEDFL LDEGKMKLDYILGLKIEDFLERRLQTQVFK K M K L K I 0 0 0 1 0 0 0 1 0 1 3 2 1 0 0 0 0 0 1 0 0 0 10 1 1192.689 P46781;B5MCT8;C9JM19 P46781 92 101 RPS9 40S ribosomal protein S9 yes no 2;3 0.0020816 76.064 By MS/MS By MS/MS By matching By MS/MS By matching 4 2 2 3 3 1.252 1.1754 27.898 13 Median 1.3077 1.3304 12.206 3 0 Median 0.89648 0.8052 53.491 2 0 Median 1.05 1.1371 8.6507 2 0 Median NaN NaN NaN 0 0 Median 1.3303 1.4261 17.79 3 0 Median 1.3635 1.1501 8.6025 3 0 Plateau 278330000 125480000 152850000 173420000 72093000 101330000 54911000 30506000 24405000 10223000 4646800 5576300 0 0 0 27527000 13332000 14195000 12242000 4899500 7342900 24461 2345 25629;25630 129753;129754;129755;129756;129757;129758;129759;129760;129761;129762;129763;129764;129765;129766 130626;130627;130628;130629;130630;130631;130632 130631 1070 7 MKLEPNLGEDDEDKDLEPGPSGTSK TRKRPRDDSDSTLKKMKLEPNLGEDDEDKD DEDKDLEPGPSGTSKASAQISGQSDTDITA K M K S K A 0 0 1 4 0 0 4 3 0 0 3 3 1 0 3 2 1 0 0 0 0 0 25 2 2700.2436 Q92797;A0A087WUE9;M0R3C7 Q92797 360 384 SYMPK Symplekin yes no 3 6.9023E-13 58.418 By MS/MS 1 0.50693 0.60915 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50693 0.60915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18829000 11752000 7077500 0 0 0 0 0 0 18829000 11752000 7077500 0 0 0 0 0 0 0 0 0 24462 3558 25631 129767 130633;130634 130633 2 MKLLTHNLLSSHVR ______________________________ ______________________________ - M K V R G 0 1 1 0 0 0 0 0 2 0 4 1 1 0 0 2 1 0 0 1 0 0 14 1 1647.9243 Q9UI30;F5GX77 Q9UI30 1 14 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein yes no 3;4 4.8227E-06 86.944 By MS/MS 2 1.1093 0.97937 13.571 2 Median NaN NaN NaN 0 0 Median 1.1093 0.97937 13.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7329300 3663000 3666200 0 0 0 7329300 3663000 3666200 0 0 0 0 0 0 0 0 0 0 0 0 24463 1005 25632 129768;129769 130635;130636 130635 352 2 MKLNTQEIFDDWAR HVEGQKLKQDGDSFRMKLNTQEIFDDWARK RMKLNTQEIFDDWARKVQQRNLGVSGRIFT R M K A R K 1 1 1 2 0 1 1 0 0 1 1 1 1 1 0 0 1 1 0 0 0 0 14 1 1765.8458 Q14204 Q14204 691 704 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0016502 37.55 By MS/MS 2 0.93095 0.92243 19.441 2 Median 0.93095 0.92243 19.441 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8768400 4232500 4536000 8768400 4232500 4536000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24464 2865 25633 129770;129771 130637;130638 130637 2 MKLPEHPEGGEPEDDEAPAK KRRHSEVETDSKKKKMKLPEHPEGGEPEDD HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K M K A K G 2 0 0 2 0 0 5 2 1 0 1 2 1 0 4 0 0 0 0 0 0 0 20 1 2174.979 Q9NX58 Q9NX58 287 306 LYAR Cell growth-regulating nucleolar protein yes yes 3;4 0.00048524 29.766 By MS/MS By matching 2 1 0.49414 0.51992 29.093 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49344 0.51849 0.38997 2 0 Median 0.90351 0.85817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10485000 6568500 3916200 0 0 0 0 0 0 8526000 5598700 2927300 1958700 969800 988890 0 0 0 0 0 0 24465 4160 25634 129772;129773;129774 130639;130640;130641 130639 3 MKLPQFGISTPGSDLHVNAK DLSLEASEGSIKLPKMKLPQFGISTPGSDL FGISTPGSDLHVNAKGPQVSGELKGPGVDV K M K A K G 1 0 1 1 0 1 0 2 1 1 2 2 1 1 2 2 1 0 0 1 0 0 20 1 2139.1147 Q09666 Q09666 5406 5425 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 8.9795E-06 44.089 By MS/MS 2 0.79295 0.86371 4.5085 2 Median 0.79295 0.86371 4.5085 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28844000 14882000 13961000 28844000 14882000 13961000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24466 2749 25635 129775;129776 130642;130643 130643 2 MKPILLQGHER ______________________________ ______________________________ - M K E R S 0 1 0 0 0 1 1 1 1 1 2 1 1 0 1 0 0 0 0 0 0 0 11 1 1320.7336 Q13347;Q5TFK1 Q13347 1 11 EIF3I Eukaryotic translation initiation factor 3 subunit I yes no 3 5.1094E-05 81.625 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 3 3 1.0133 1.0431 15.559 14 Median 1.0153 1.0639 15.689 5 1 Median 0.97018 0.87552 12.714 3 0 Median 1.0113 1.0997 5.531 3 2 Median 1.0488 0.9174 12.733 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83634000 41200000 42434000 40264000 19213000 21052000 23414000 11686000 11728000 14142000 7510600 6631800 5812600 2790200 3022500 0 0 0 0 0 0 24467 2806 25636;25637 129777;129778;129779;129780;129781;129782;129783;129784;129785;129786;129787;129788;129789;129790 130644;130645;130646;130647;130648;130649;130650;130651;130652;130653;130654;130655;130656 130650 1506 13 MKPLMGVIYVPLTDKEK QMLEQYDKLQDGSIKMKPLMGVIYVPLTDK PLMGVIYVPLTDKEKQWSRWK_________ K M K E K Q 0 0 0 1 0 0 1 1 0 1 2 3 2 0 2 0 1 0 1 2 0 0 17 2 1961.073 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8 A0A0A0MRJ6 263 279 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 3;4 0.0058124 45.618 By MS/MS By matching 4 1 0.89752 0.92917 36.53 5 Median 0.84317 0.89044 41.302 4 3 Median 0.94953 0.92917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80355000 42898000 37457000 78000000 41830000 36170000 2355600 1068200 1287400 0 0 0 0 0 0 0 0 0 0 0 0 24468 163 25638;25639 129791;129792;129793;129794;129795 130657;130658;130659;130660;130661 130661 77;78 5 MKPLVVFVLGGPGAGK ______________________________ KPLVVFVLGGPGAGKGTQCARIVEKYGYTH - M K G K G 1 0 0 0 0 0 0 4 0 0 2 2 1 1 2 0 0 0 0 3 0 0 16 1 1568.9113 P30085 P30085 1 16 CMPK1 UMP-CMP kinase yes yes 2;3 0.00080604 50.284 By MS/MS By matching 2 2 0.81805 0.83123 11.397 4 Median 0.81805 0.83123 6.1179 2 0 Median 0.86344 0.79296 18.167 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31622000 17599000 14023000 30367000 17021000 13346000 1255000 578540 676420 0 0 0 0 0 0 0 0 0 0 0 0 24469 2187 25640 129796;129797;129798;129799 130662;130663;130664;130665;130666;130667 130666 6 MKPLYVNTETLTLR GELPLEDGGSHKSKKMKPLYVNTETLTLRE KMKPLYVNTETLTLREPDGLKMKLILSPKE K M K L R E 0 1 1 0 0 0 1 0 0 0 3 1 1 0 1 0 3 0 1 1 0 0 14 1 1677.9124 Q9UGU5;B0QXZ8;B0QXZ9 Q9UGU5 172 185 HMGXB4 HMG domain-containing protein 4 yes no 3 0.036274 18.364 By MS/MS 3 1.1424 1.2763 27.857 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1424 1.2763 27.857 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10813000 6133300 4680100 0 0 0 0 0 0 10813000 6133300 4680100 0 0 0 0 0 0 0 0 0 24470 4266 25641 129800;129801;129802 130668 130668 1 MKPWQSEYGGVVFGGWAR STYEIRQDIEDSVSRMKPWQSEYGGVVFGG WQSEYGGVVFGGWARMAQPIVAFTVVEVAK R M K A R M 1 1 0 0 0 1 1 4 0 0 0 1 1 1 1 1 0 2 1 2 0 0 18 1 2053.9833 O60306;H0YH15 O60306 492 509 AQR Intron-binding protein aquarius yes no 3 0.025492 16.123 By matching By MS/MS 1 1 0.76609 0.80707 19.917 2 Median NaN NaN NaN 0 0 Median 0.71746 0.70105 NaN 1 0 Median 0.81802 0.92913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3206900 1672400 1534500 0 0 0 244430 142840 101590 2962500 1529600 1432900 0 0 0 0 0 0 0 0 0 24471 1611 25642 129803;129804 130669 130669 1 MKQDAQVVLYR VAEQKREKEIKSELKMKQDAQVVLYRSYRH SELKMKQDAQVVLYRSYRHGDLPDIQIKHS K M K Y R S 1 1 0 1 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1 2 0 0 11 1 1349.7126 P78527 P78527 2763 2773 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 9.2479E-12 143.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 7 3 3 2 1.1082 1.1856 37.491 26 Median 0.99459 1.0098 60.857 7 2 Median 1.381 1.2853 31.669 6 1 Median 0.93949 1.0932 22.934 6 1 Median 1.4783 1.3769 7.3197 3 0 Median 0.96262 1.0759 18.362 2 0 Median 1.7537 1.5221 6.5593 2 1 Median 422720000 202070000 220650000 93944000 46454000 47490000 136360000 57234000 79129000 157150000 83645000 73502000 22718000 9027000 13691000 6993200 3551100 3442000 5558100 2158400 3399600 24472 2647 25643;25644 129805;129806;129807;129808;129809;129810;129811;129812;129813;129814;129815;129816;129817;129818;129819;129820;129821;129822;129823;129824;129825;129826;129827;129828;129829;129830;129831;129832 130670;130671;130672;130673;130674;130675;130676;130677;130678;130679;130680;130681;130682;130683;130684;130685;130686;130687;130688;130689;130690;130691;130692;130693;130694;130695;130696;130697;130698;130699 130675 1326 30 MKQELSSELSTLLSSLSR RYLRDPAVHPRDKQRMKQELSSELSTLLSS ELSSELSTLLSSLSRYFRRGAPSSPATGVL R M K S R Y 0 1 0 0 0 1 2 0 0 0 5 1 1 0 0 6 1 0 0 0 0 0 18 1 2008.0511 Q5SRE5 Q5SRE5 1683 1700 NUP188 Nucleoporin NUP188 homolog yes yes 3 3.4315E-05 47.568 By matching By MS/MS By MS/MS 1 3 2 1.0886 1.0998 35.188 6 Median 1.1544 1.1835 NaN 1 0 Median 1.2071 1.1572 46.287 3 0 Plateau 0.99774 1.1613 14.875 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635200 1770200 1865000 207520 86936 120590 2465100 1220000 1245000 962570 463200 499360 0 0 0 0 0 0 0 0 0 24473 3074 25645 129833;129834;129835;129836;129837;129838 130700;130701 130701 2 MKQEPVKPEEGR KDLRNDEHTRRELAKMKQEPVKPEEGRDMA LAKMKQEPVKPEEGRDMANRIGAFGYMECS K M K G R D 0 1 0 0 0 1 3 1 0 0 0 2 1 0 2 0 0 0 0 1 0 0 12 2 1426.7238 P61586 P61586 134 145 RHOA Transforming protein RhoA yes yes 3 0.0049361 35.006 By MS/MS 1 0.85289 0.87269 NaN 1 Median NaN NaN NaN 0 0 Median 0.85289 0.87269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1743900 922670 821230 0 0 0 1743900 922670 821230 0 0 0 0 0 0 0 0 0 0 0 0 24474 2559 25646 129839 130702;130703 130702 2 MKSEEQPMDLENR EEETPKQEEQKESEKMKSEEQPMDLENRST EKMKSEEQPMDLENRSTANVLEETTVKKEK K M K N R S 0 1 1 1 0 1 3 0 0 0 1 1 2 0 1 1 0 0 0 0 0 0 13 1 1605.7127 Q96T23;H0YER1;H0YCN2 Q96T23 253 265 RSF1 Remodeling and spacing factor 1 yes no 3 0.00011166 76.073 By matching By MS/MS 1 3 1.002 1.076 25.455 4 Median 1.1732 1.1945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85586 0.9692 30.9 3 1 Median NaN NaN NaN 0 0 Median 13826000 7399800 6426400 1587300 915170 672120 0 0 0 0 0 0 0 0 0 12239000 6484700 5754300 0 0 0 24475 3740 25647 129840;129841;129842;129843 130704;130705;130706;130707 130705 3 MKSQAFIEMETR LAEPYGKIKNYILMRMKSQAFIEMETREDA LMRMKSQAFIEMETREDAMAMVDHCLKKAL R M K T R E 1 1 0 0 0 1 2 0 0 1 0 1 2 1 0 1 1 0 0 0 0 0 12 1 1469.7007 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 531 542 MATR3 Matrin-3 yes no 2;3 9.0743E-05 94.616 By matching By MS/MS By matching 1 5 2 1.112 1.139 52.235 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.9735 4.7749 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0326 1.1426 11.899 5 0 Median 1.22 1.0615 3.4524 2 0 Median 38691000 17012000 21679000 0 0 0 0 0 0 5327000 1261500 4065500 0 0 0 29273000 13946000 15327000 4091500 1805100 2286400 24476 297 25648;25649 129844;129845;129846;129847;129848;129849;129850;129851 130708;130709;130710;130711;130712 130709 144;145 5 MKTEAELAKEEQEHLR VRELGFEMKAQPSNRMKTEAELAKEEQEHL KTEAELAKEEQEHLRKLEAERLRRMLGKDE R M K L R K 2 1 0 0 0 1 5 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 16 2 1940.9626 P78316;E9PFK5 P78316 272 287 NOP14 Nucleolar protein 14 yes no 4 6.2094E-07 78.285 By MS/MS By MS/MS 1 1 1.1198 1.3568 16.307 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2222 1.5226 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0259 1.209 NaN 1 1 Median NaN NaN NaN 0 0 Median 18362000 8501600 9860200 0 0 0 0 0 0 4430600 1989000 2441600 0 0 0 13931000 6512700 7418600 0 0 0 24477 2637 25650 129852;129853 130713;130714;130715 130715 3 MKVVEVLAGHGHLYSR KACLDTAVENMPSLKMKVVEVLAGHGHLYS KVVEVLAGHGHLYSRIPGLLSPHPLLQLSY K M K S R I 1 1 0 0 0 0 1 2 2 0 2 1 1 0 0 1 0 0 1 3 0 0 16 1 1794.9563 P49327 P49327 1240 1255 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3;4 6.4767E-07 87.138 By MS/MS By matching By matching 5 1 1 1.1676 1.1686 27.053 7 Median 1.1676 1.1686 26.073 5 0 Median 1.7794 1.6574 NaN 1 0 Median 0.96451 1.1471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69622000 31705000 37917000 62558000 29362000 33196000 5318600 1536000 3782600 1745600 807530 938080 0 0 0 0 0 0 0 0 0 24478 2377 25651;25652 129854;129855;129856;129857;129858;129859;129860 130716;130717;130718;130719;130720 130720 1089 5 MKYDESDNAFIR FKENNVVFNRFFEMKMKYDESDNAFIRASR EMKMKYDESDNAFIRASRALTDKVTDLLGG K M K I R A 1 1 1 2 0 0 1 0 0 1 0 1 1 1 0 1 0 0 1 0 0 0 12 1 1487.6715 O43615;M0QXU7 O43615 263 274 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 3 0.0026475 38.021 By matching By MS/MS By matching By matching 1 1 1 1 1.1718 1.2197 16.656 4 Median NaN NaN NaN 0 0 Median 1.206 1.131 NaN 1 0 Median 1.1386 1.2931 NaN 1 0 Median 1.8418 1.6234 NaN 1 0 Median 1.0654 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median 10222000 4850200 5372100 0 0 0 3269300 1478700 1790600 4012500 1934100 2078400 578940 206710 372230 2361600 1230700 1130900 0 0 0 24479 1577 25653 129861;129862;129863;129864 130721 130721 1 MLAAYLYEVSQLKD QNEKLNRYNYIEGTKMLAAYLYEVSQLKD_ KMLAAYLYEVSQLKD_______________ K M L K D - 2 0 0 1 0 1 1 0 0 0 3 1 1 0 0 1 0 0 2 1 0 0 14 1 1642.8276 Q96KP4 Q96KP4 462 475 CNDP2 Cytosolic non-specific dipeptidase yes yes 2 0.0011946 63.283 By MS/MS 1 1.327 1.1414 NaN 1 Median NaN NaN NaN 0 0 Median 1.327 1.1414 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1922000 855750 1066200 0 0 0 1922000 855750 1066200 0 0 0 0 0 0 0 0 0 0 0 0 24480 3696 25654 129865 130722 130722 1 MLAEDELR NDRERVNEAREELMRMLAEDELRDAVLLVF AREELMRMLAEDELRDAVLLVFANKQDLPN R M L L R D 1 1 0 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 975.46953 P84077;P61204;F5H423 P84077 110 117 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 0.0024458 120.49 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 1 2 1.1692 0.98171 14.772 10 Median 0.96842 0.94841 6.1612 2 0 Median 1.209 1.0027 5.8981 2 1 Median 1.1902 1.1409 16.284 3 1 Plateau 0.87291 0.73203 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3335 1.0623 12.435 2 0 Median 62389000 29235000 33155000 24252000 11576000 12676000 21680000 9829300 11851000 8394100 4046500 4347600 817240 401950 415290 0 0 0 7245500 3381300 3864300 24481 2549 25655;25656 129866;129867;129868;129869;129870;129871;129872;129873;129874;129875 130723;130724;130725;130726;130727;130728;130729;130730;130731;130732 130727 1226 10 MLAHPLHVISMR VKETSYEMMMQCVSRMLAHPLHVISMRCMV VSRMLAHPLHVISMRCMVQFVGREAKYSGV R M L M R C 1 1 0 0 0 0 0 0 2 1 2 0 2 0 1 1 0 0 0 1 0 0 12 0 1403.753 H0Y8C3;Q9NZJ7 H0Y8C3 194 205 MTCH1 Mitochondrial carrier homolog 1 yes no 2 5.5561E-09 105.98 By MS/MS By MS/MS 2 1 0.69825 0.65212 NaN 1 Median 0.69825 0.65212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8322300 4208700 4113700 8322300 4208700 4113700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24482 1161 25657 129876;129877;129878 130733;130734;130735 130733 3 MLAITANTLR ELECNDVVLFWRIQRMLAITANTLRQQLTN WRIQRMLAITANTLRQQLTNTEVRRLEKNV R M L L R Q 2 1 1 0 0 0 0 0 0 1 2 0 1 0 0 0 2 0 0 0 0 0 10 0 1102.6169 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;H7C141 A0A2R8Y3X5 780 789 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.0022064 76.827 By MS/MS By MS/MS 1 1 0.76222 0.68917 51.961 2 Median 0.5045 0.47726 NaN 1 1 Median 1.1516 0.99516 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22785000 14927000 7857900 14842000 10604000 4237600 7943500 4323100 3620300 0 0 0 0 0 0 0 0 0 0 0 0 24483 357 25658 129879;129880 130736;130737 130736 2 MLAIYDGFDGFAK AVRSAVRVGIADGHRMLAIYDGFDGFAKGQ HRMLAIYDGFDGFAKGQIKEIGWTDVGGWT R M L A K G 2 0 0 2 0 0 0 2 0 1 1 1 1 2 0 0 0 0 1 0 0 0 13 0 1446.6853 Q01813;B1APP6;H0Y3Y3 Q01813 443 455 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 3.8838E-07 109.42 By MS/MS By MS/MS 5 2 1.0609 0.99763 15.715 7 Median 1.0609 1.0486 8.4316 5 0 Median 0.95364 0.84284 20.678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32275000 14186000 18089000 24043000 10389000 13654000 8232300 3797100 4435200 0 0 0 0 0 0 0 0 0 0 0 0 24484 2692 25659;25660 129881;129882;129883;129884;129885;129886;129887 130738;130739;130740;130741;130742;130743;130744;130745;130746 130742 1386 9 MLALALLDR EVVCRDACDGHEIGRMLALALLDRIVSVDK GHEIGRMLALALLDRIVSVDKQQQWLLYLS R M L D R I 2 1 0 1 0 0 0 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1014.5896 Q92621;U3KPX2 Q92621 1494 1502 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.0023677 73.26 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 5 2 3 1 1.1101 1.1552 14.866 13 Median 1.0932 1.0983 NaN 1 0 Median 1.4974 1.3117 NaN 1 0 Median 1.0564 1.1552 12.856 5 0 Median 1.3786 1.209 1.8467 2 0 Median 0.97297 1.0197 28.55 3 0 Median 1.2163 1.0755 NaN 1 0 Median 22879000 10544000 12335000 1309100 577880 731260 573970 239460 334510 17885000 8295700 9589800 1787200 757190 1030000 1225900 630140 595750 97642 43685 53957 24485 3547 25661;25662 129888;129889;129890;129891;129892;129893;129894;129895;129896;129897;129898;129899;129900 130747;130748;130749;130750;130751;130752 130749 1765 6 MLALGNQVGK CDIWYMRFSMDFWQKMLALGNQVGKLYVWD DFWQKMLALGNQVGKLYVWDLEVEDPHKAK K M L G K L 1 0 1 0 0 1 0 2 0 0 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1029.5641 E9PJK2;O75530;E9PMU3;H0YEL4 E9PJK2 296 305 EED Polycomb protein EED yes no 2 0.0095388 50.127 By MS/MS By MS/MS 1 1 1.0015 0.90714 28.305 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2874 1.1081 NaN 1 1 Median 0.77915 0.74259 NaN 1 0 Median NaN NaN NaN 0 0 Median 5582700 2770000 2812700 0 0 0 0 0 0 0 0 0 1436400 633130 803260 4146300 2136900 2009400 0 0 0 24486 944 25663 129901;129902 130753;130754;130755 130753 3 MLANFESGK SNQKPDTDEAEDPEKMLANFESGKHKYRQT AEDPEKMLANFESGKHKYRQTVMFTATMPP K M L G K H 1 0 1 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 9 0 995.47462 Q9BUQ8 Q9BUQ8 588 596 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.049787 31.074 By MS/MS By matching 1 1 1.3964 1.2196 9.1305 2 Median NaN NaN NaN 0 0 Median 1.4448 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3496 1.1434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2798800 1179900 1618900 0 0 0 888090 357240 530860 0 0 0 1910700 822630 1088000 0 0 0 0 0 0 24487 3842 25664 129903;129904 130756 130756 1 MLAPEGALNIHEK HKIYHLQSKVPTFVRMLAPEGALNIHEKAW VRMLAPEGALNIHEKAWNAYPYCRTVLPNE R M L E K A 2 0 1 0 0 0 2 1 1 1 2 1 1 0 1 0 0 0 0 0 0 0 13 0 1421.7337 F5GWE5;Q00169;I3L4H1;I3L471;I3L4U7;I3L4C0;I3L459;I3L3W1;I3L2X8 F5GWE5 74 86 PITPNA Phosphatidylinositol transfer protein alpha isoform yes no 2 0.0017936 68.536 By MS/MS 1 0.66425 0.62213 NaN 1 Median 0.66425 0.62213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7274200 4730700 2543500 7274200 4730700 2543500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24488 997 25665 129905 130757 130757 1 MLAQQAVK YLAILGSVTFLAGNRMLAQQAVKRTAH___ TFLAGNRMLAQQAVKRTAH___________ R M L V K R 2 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 887.48987 P04844;Q5JYR3 P04844 620 627 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.0044705 81.381 By matching By MS/MS By matching 3 3 2 1.1491 1.0771 15.661 8 Median 0.97444 0.94265 13.838 3 0 Median 1.2456 1.0597 8.2623 3 0 Median 1.2187 1.2916 7.0621 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25529000 11587000 13941000 3047400 1509000 1538400 20363000 9084500 11278000 2118400 993920 1124500 0 0 0 0 0 0 0 0 0 24489 1854 25666 129906;129907;129908;129909;129910;129911;129912;129913 130758;130759 130759 2 MLASASEDHFIDIAEVETGDK LDWPVRTLSFSHDGKMLASASEDHFIDIAE EDHFIDIAEVETGDKLWEVQCESPTFTVAW K M L D K L 3 0 0 3 0 0 3 1 1 2 1 1 1 1 0 2 1 0 0 1 0 0 21 0 2277.0471 Q96J01;D6REC9 Q96J01 280 300 THOC3 THO complex subunit 3 yes no 3 2.6042E-18 83.213 By MS/MS By matching 3 1 0.95105 0.92605 5.8707 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88617 0.91715 7.0353 3 1 Median 1.1026 0.93503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13864000 7028600 6835600 0 0 0 0 0 0 13590000 6901600 6688400 274260 127060 147210 0 0 0 0 0 0 24490 3682 25667;25668 129914;129915;129916;129917 130760;130761;130762 130762 1808 3 MLATLEPEQR PTVEQQGEMARSGGRMLATLEPEQRAEIIH RSGGRMLATLEPEQRAEIIHHLADLLTDQR R M L Q R A 1 1 0 0 0 1 2 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 10 0 1186.6016 P54886 P54886 376 385 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00058909 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 2 3 2 0.98358 0.8549 33.707 11 Median 0.90581 0.85651 NaN 1 0 Median 1.0118 0.87649 34.98 3 2 Median 1.1414 1.1618 18.848 2 1 Median 0.98358 0.84773 45.453 3 0 Plateau NaN NaN NaN 0 0 Median 0.99847 0.83215 3.8146 2 2 Median 211300000 94218000 117090000 30978000 15716000 15262000 51554000 20923000 30631000 99774000 43124000 56649000 17303000 8964600 8338600 0 0 0 11695000 5490100 6204700 24491 2488 25669;25670 129918;129919;129920;129921;129922;129923;129924;129925;129926;129927;129928;129929 130763;130764;130765;130766;130767;130768;130769;130770;130771;130772;130773;130774;130775;130776;130777;130778 130766 1171 16 MLATLFKDER LHCTILASAGQQRSRMLATLFKDERCQQLA QQRSRMLATLFKDERCQQLAAYGILEKMYL R M L E R C 1 1 0 1 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 10 1 1222.638 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 245 254 COPS4 COP9 signalosome complex subunit 4 yes no 2;3 0.0019581 92.062 By MS/MS By matching By MS/MS 1 1 2 1.1298 1.2332 5.2383 4 Median 1.1972 1.2825 NaN 1 0 Median 1.3405 1.2532 NaN 1 0 Median 1.0327 1.1745 4.6117 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20246000 9277900 10968000 4356700 2093500 2263200 135740 68768 66974 15754000 7115600 8638100 0 0 0 0 0 0 0 0 0 24492 813 25671 129930;129931;129932;129933 130779;130780;130781;130782 130779 4 MLDAAVIK DNLLLDIDKADAIVKMLDAAVIKMEGGTEN KADAIVKMLDAAVIKMEGGTENDLRILEQE K M L I K M 2 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 859.48372 Q9BXP5 Q9BXP5 249 256 SRRT Serrate RNA effector molecule homolog yes yes 2 0.023122 48.561 By MS/MS By MS/MS 2 1 1.0966 1.0525 3.3275 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0022 1.0775 NaN 1 0 Median 1.1999 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9938500 4841400 5097100 0 0 0 0 0 0 6941100 3446700 3494400 2997400 1394700 1602700 0 0 0 0 0 0 24493 3879 25672 129934;129935;129936 130783;130784;130785;130786 130786 4 MLDAEDIVGTARPDEK NTAFDVAEKYLDIPKMLDAEDIVGTARPDE LDAEDIVGTARPDEKAIMTYVSSFYHAFSG K M L E K A 2 1 0 3 0 0 2 1 0 1 1 1 1 0 1 0 1 0 0 1 0 0 16 1 1758.8458 P12814;H9KV75;G3V2W4;G3V2N5 P12814 221 236 ACTN1 Alpha-actinin-1 yes no 2;3 2.1943E-07 94.688 By MS/MS 2 0.79287 0.82641 14.578 2 Median 0.79287 0.82641 14.578 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29289000 15239000 14049000 29289000 15239000 14049000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24494 1983 25673 129937;129938 130787;130788 130788 2 MLDAEDIVNTARPDEK NNAFEVAEKYLDIPKMLDAEDIVNTARPDE LDAEDIVNTARPDEKAIMTYVSSFYHAFSG K M L E K A 2 1 1 3 0 0 2 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 16 1 1815.8673 O43707 O43707 240 255 ACTN4 Alpha-actinin-4 yes yes 2;3 3.3483E-09 118.48 By MS/MS By matching By matching By matching 3 3 1 1 0.78318 0.79001 61.455 8 Median 0.83586 0.87215 10.096 3 0 Plateau 0.79542 0.79405 7.51 3 0 Plateau 0.11646 0.14206 NaN 1 0 Median 0.83322 0.80074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77303000 41193000 36111000 66731000 33652000 33080000 4499800 2454500 2045300 5547600 4799000 748540 524680 287400 237280 0 0 0 0 0 0 24495 1585 25674 129939;129940;129941;129942;129943;129944;129945;129946 130789;130790;130791;130792;130793 130793 5 MLDDRGNTAAYLLYAFTR LSHNRLNDYIFSFDKMLDDRGNTAAYLLYA DRGNTAAYLLYAFTRIRSIARLANIDEEML K M L T R I 3 2 1 2 0 0 0 1 0 0 3 0 1 1 0 0 2 0 2 0 0 0 18 1 2090.0255 P54136 P54136 523 540 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.00075935 33.308 By MS/MS 1 1.2301 1.212 NaN 1 Median 1.2301 1.212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1565000 645580 919430 1565000 645580 919430 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24496 2480 25675 129947 130794 130794 1 MLDEMKDNLLLDMYLAPHVR IIFKFYESKYASCLKMLDEMKDNLLLDMYL KDNLLLDMYLAPHVRTLYTQIRNRALIQYF K M L V R T 1 1 1 3 0 0 1 0 1 0 5 1 3 0 1 0 0 0 1 1 0 0 20 1 2416.1953 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070 C9JFE4 324 343 GPS1 COP9 signalosome complex subunit 1 yes no 3 9.0784E-09 63.337 By MS/MS 1 0.92702 0.84731 NaN 1 Median NaN NaN NaN 0 0 Median 0.92702 0.84731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1605300 803550 801780 0 0 0 1605300 803550 801780 0 0 0 0 0 0 0 0 0 0 0 0 24497 695 25676 129948 130795;130796 130796 2 MLDGLDPHPMLPNYK LPNYDAREIVNNVRRMLDGLDPHPMLPNYK MLDGLDPHPMLPNYKNFKGTIQELGQNQYA R M L Y K N 0 0 1 2 0 0 0 1 1 0 3 1 2 0 3 0 0 0 1 0 0 0 15 0 1739.8375 Q02880;E9PCY5 Q02880 900 914 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 3 0.02401 19.075 By MS/MS By matching 1 1 0.5364 0.58171 1.7711 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5155 0.57447 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55816 0.58904 NaN 1 0 Median NaN NaN NaN 0 0 Median 6673700 4287900 2385800 0 0 0 0 0 0 4013000 2571400 1441600 0 0 0 2660700 1716500 944230 0 0 0 24498 2704 25677 129949;129950 130797;130798 130797 2 MLDHEYTTK KLSPKAEEVATFFAKMLDHEYTTKEIFRKN ATFFAKMLDHEYTTKEIFRKNFFKDWRKEM K M L T K E 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 1 0 0 0 9 0 1136.5172 P11387;Q969P6;E5RIC7;E5RJ95;E5RFS0;E5RJ33;H0YBR3;H0YC03;E5RGE7;E5RGR4;E5RFE3;E5RGR2 P11387 263 271 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.00097908 87.308 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1.1606 1.1223 30.457 6 Median NaN NaN NaN 0 0 Median 1.1607 1.0302 NaN 1 0 Median 1.0491 1.1389 NaN 1 0 Median 1.4908 1.2919 NaN 1 0 Median 1.1606 1.1907 NaN 1 0 Median 0.91501 0.78516 48.464 2 0 Median 10750000 4880700 5869100 0 0 0 1636900 782010 854900 2669100 1314500 1354600 4172400 1706000 2466300 1000600 454650 545980 1270800 623540 647250 24499 1962 25678 129951;129952;129953;129954;129955;129956 130799;130800;130801 130800 3 MLDMGFEPQIR NLRRTTYLVLDEADRMLDMGFEPQIRKIVD EADRMLDMGFEPQIRKIVDQIRPDRQTLMW R M L I R K 0 1 0 1 0 1 1 1 0 1 1 0 2 1 1 0 0 0 0 0 0 0 11 0 1335.6315 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 253 263 DDX3X;DDX3Y;DDX17;DDX5 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 2.8239E-06 159.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 16 12 13 15 1.0075 0.91969 24.5 70 Median 1.041 1.0293 16.329 8 3 Median 1.0404 0.8995 12.81 7 0 Median 0.89559 0.93486 17.836 15 1 Median 1.0884 0.91292 48.521 12 0 Median 0.95458 0.98134 10.133 13 3 Median 1.0505 0.88065 16.674 15 0 Median 1305800000 658020000 647740000 99934000 48556000 51378000 32696000 15557000 17139000 887790000 453150000 434650000 61452000 29290000 32162000 193650000 97593000 96060000 30224000 13873000 16351000 24500 1334;343;263 25679;25680;25681 129957;129958;129959;129960;129961;129962;129963;129964;129965;129966;129967;129968;129969;129970;129971;129972;129973;129974;129975;129976;129977;129978;129979;129980;129981;129982;129983;129984;129985;129986;129987;129988;129989;129990;129991;129992;129993;129994;129995;129996;129997;129998;129999;130000;130001;130002;130003;130004;130005;130006;130007;130008;130009;130010;130011;130012;130013;130014;130015;130016;130017;130018;130019;130020;130021;130022;130023;130024;130025;130026;130027;130028 130802;130803;130804;130805;130806;130807;130808;130809;130810;130811;130812;130813;130814;130815;130816;130817;130818;130819;130820;130821;130822;130823;130824;130825;130826;130827;130828;130829;130830;130831;130832;130833;130834;130835;130836;130837;130838;130839;130840;130841;130842;130843;130844;130845;130846;130847;130848;130849;130850;130851;130852;130853;130854;130855;130856;130857;130858;130859;130860;130861;130862;130863;130864;130865;130866;130867;130868;130869;130870;130871;130872;130873;130874;130875;130876;130877;130878;130879;130880;130881;130882;130883 130810 116;117 82 MLDMGFEPQIRK NLRRTTYLVLDEADRMLDMGFEPQIRKIVD ADRMLDMGFEPQIRKIVDQIRPDRQTLMWS R M L R K I 0 1 0 1 0 1 1 1 0 1 1 1 2 1 1 0 0 0 0 0 0 0 12 1 1463.7265 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 253 264 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2;3 0.00029433 62.262 By matching By MS/MS 1 4 1.1805 1.2974 31.755 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2525 1.3332 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1782 1.2618 36.236 4 1 Median NaN NaN NaN 0 0 Median 12025000 4943400 7081500 0 0 0 0 0 0 1036800 417370 619460 0 0 0 10988000 4526000 6462000 0 0 0 24501 1334;343 25682 130029;130030;130031;130032;130033 130884;130885;130886;130887;130888 130885 5 MLDNDSILVDAIR ______________________________ LRMLDNDSILVDAIRKIKDDVEYYVDSSQD R M L I R K 1 1 1 3 0 0 0 0 0 2 2 0 1 0 0 1 0 0 0 1 0 0 13 0 1473.7497 H7C3F5;A0A2H2FJL5;B7Z6J7;O75175;A0A2R8Y6N5;A0A0G2JNJ7;H7C148 H7C3F5 8 20 CNOT3 CCR4-NOT transcription complex subunit 3 yes no 2 0.001322 70.977 By MS/MS 1 0.68414 0.59635 NaN 1 Median NaN NaN NaN 0 0 Median 0.68414 0.59635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1881300 1155900 725380 0 0 0 1881300 1155900 725380 0 0 0 0 0 0 0 0 0 0 0 0 24502 354 25683 130034 130889 130889 1 MLDNLGYR PKWQIGEQEFEALMRMLDNLGYRTGYPYRY EFEALMRMLDNLGYRTGYPYRYPALREKSK R M L Y R T 0 1 1 1 0 0 0 1 0 0 2 0 1 0 0 0 0 0 1 0 0 0 8 0 980.47495 E7EV99;E7ENY0;P35611;A0A0A0MSR2;H0Y9H2;P35612 E7EV99 383 390 ADD1;ADD2 Alpha-adducin;Beta-adducin no no 2 0.00070426 151.51 By matching By matching By MS/MS By MS/MS By matching 1 1 2 3 2 1.068 0.94069 11.505 9 Median 0.93845 0.90742 NaN 1 0 Median 1.4629 1.2862 NaN 1 0 Median 0.96031 1.0118 11.063 2 0 Median 1.0816 0.94069 4.1711 3 0 Median NaN NaN NaN 0 0 Median 1.1093 0.93141 3.4921 2 0 Median 37098000 18041000 19057000 4870500 2344000 2526400 1021900 371020 650840 22551000 11166000 11385000 6637700 3149200 3488500 0 0 0 2016500 1010600 1005900 24503 866;2248 25684 130035;130036;130037;130038;130039;130040;130041;130042;130043 130890;130891;130892;130893;130894 130891 5 MLDQENTIR M L I R 0 1 1 1 0 1 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1118.539 REV__C9JNM8 yes no 2 0.060674 43.246 By MS/MS 1 0.74462 0.7489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74462 0.7489 NaN 1 1 Median NaN NaN NaN 0 0 Median 3434500 2106100 1328300 0 0 0 0 0 0 0 0 0 0 0 0 3434500 2106100 1328300 0 0 0 + 24504 4516 25685 130044 130895 130895 2003 1 MLEDRDLFVMR LEREKALEHKNRMSRMLEDRDLFVMRLKAA RMSRMLEDRDLFVMRLKAARQSVYEEKLKQ R M L M R L 0 2 0 2 0 0 1 0 0 0 2 0 2 1 0 0 0 0 0 1 0 0 11 1 1423.6952 Q14152 Q14152 753 763 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 5.4135E-05 91.855 By MS/MS By matching By matching 5 2 1 1.1455 1.2438 19.036 8 Median 1.1526 1.2695 20.869 5 2 Median 1.2281 1.159 22.134 2 0 Median 1.002 1.2187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64569000 27417000 37152000 62526000 26533000 35993000 879680 322810 556870 1163300 561120 602150 0 0 0 0 0 0 0 0 0 24505 2860 25686;25687 130045;130046;130047;130048;130049;130050;130051;130052 130896;130897;130898;130899;130900 130899 1543 5 MLEELNKQIEEQKR PVAGAATPSLVEQQKMLEELNKQIEEQKRQ KMLEELNKQIEEQKRQLEEQEEALRQQRAA K M L K R Q 0 1 1 0 0 2 4 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 14 2 1786.9247 Q9BTC0 Q9BTC0 1478 1491 DIDO1 Death-inducer obliterator 1 yes yes 3;4 0.00083606 57.136 By MS/MS 3 0.57679 0.76204 12.947 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57679 0.76204 12.947 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24479000 15551000 8928100 0 0 0 0 0 0 24479000 15551000 8928100 0 0 0 0 0 0 0 0 0 24506 3824 25688 130053;130054;130055 130901;130902 130901 2 MLEENTNILK QRQQLGTAVELEMAKMLEENTNILKFGYQF LEMAKMLEENTNILKFGYQFTQQGPRTRAA K M L L K F 0 0 2 0 0 0 2 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1203.6169 Q9NYL9;H0YKU1;H0YNJ8 Q9NYL9 308 317 TMOD3 Tropomodulin-3 yes no 2 0.0095661 64.04 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24507 4178 25689 130056 130903 130903 1 MLEIDPQK EVNEAFSLVVLANIKMLEIDPQKVNINGGA VVLANIKMLEIDPQKVNINGGAVSLGHPIG K M L Q K V 0 0 0 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 8 0 972.49502 P24752 P24752 366 373 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.0034996 92.47 By MS/MS By MS/MS 1 1 0.87198 0.8178 5.689 2 Median NaN NaN NaN 0 0 Median 0.99962 0.85137 NaN 1 1 Median 0.76064 0.78555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48526000 24047000 24479000 0 0 0 29607000 13818000 15790000 18919000 10230000 8689200 0 0 0 0 0 0 0 0 0 24508 2126 25690 130057;130058 130904;130905;130906 130904 3 MLEILEGK NMQKMLPEIDQNKDRMLEILEGKGLSFLFP IDQNKDRMLEILEGKGLSFLFPLLKLEKEL R M L G K G 0 0 0 0 0 0 2 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 931.50485 P78344;D3DQV9;H0Y3P2 P78344 715 722 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.055441 54.157 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24509 2639 25691 130059 130907 130907 1 MLELVAQK KPALSEEERQEQTKRMLELVAQKQREREER RQEQTKRMLELVAQKQREREEREEREALER R M L Q K Q 1 0 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 8 0 930.52084 E9PJ81;E9PRQ7;Q04323 E9PJ81 98 105 UBXN1 UBX domain-containing protein 1 yes no 2 0.012539 73.616 By MS/MS 1 0.74955 0.69192 NaN 1 Median 0.74955 0.69192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19990000 12531000 7459100 19990000 12531000 7459100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24510 942 25692 130060 130908 130908 1 MLEQLDMR NLKHIKHFILDECDKMLEQLDMRRDVQEIF ILDECDKMLEQLDMRRDVQEIFRMTPHEKQ K M L M R R 0 1 0 1 0 1 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 8 0 1034.4889 O00148;K7EQN7;K7EPJ3;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 201 208 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 4.9499E-09 173.88 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 3 7 7 3 4 1.2033 1.0844 16.038 25 Median 1.2304 1.1723 NaN 1 0 Median 1.2215 1.0561 13.18 3 0 Median 1.0753 1.07 25.046 7 1 Median 1.2204 1.1102 9.0578 7 0 Median 1.1546 1.2121 12.571 3 0 Median 1.3682 1.1061 9.8912 4 0 Median 782170000 354650000 427520000 13054000 6015200 7039000 4134200 1958200 2175900 441390000 204040000 237350000 303210000 133390000 169820000 8646600 4324300 4322300 11737000 4923100 6813700 24511 2842;1441 25693;25694;25695 130061;130062;130063;130064;130065;130066;130067;130068;130069;130070;130071;130072;130073;130074;130075;130076;130077;130078;130079;130080;130081;130082;130083;130084;130085 130909;130910;130911;130912;130913;130914;130915;130916;130917;130918;130919;130920;130921;130922;130923;130924;130925;130926;130927;130928;130929;130930 130925 461;462 22 MLEQLDMRR NLKHIKHFILDECDKMLEQLDMRRDVQEIF LDECDKMLEQLDMRRDVQEIFRMTPHEKQV K M L R R D 0 2 0 1 0 1 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 9 1 1190.59 O00148;K7EQN7;K7EPJ3;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 201 209 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 0.0024978 84.476 By MS/MS By MS/MS 2 1 1.9112 1.7827 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9112 1.7827 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15145000 1396600 13749000 0 0 0 0 0 0 0 0 0 12194000 1396600 10797000 2951300 0 2951300 0 0 0 24512 2842;1441 25696 130086;130087;130088 130931;130932;130933 130933 3 MLETKWSLLQQQK ASFIDKVRFLEQQNKMLETKWSLLQQQKTA NKMLETKWSLLQQQKTARSNMDNMFESYIN K M L Q K T 0 0 0 0 0 3 1 0 0 0 3 2 1 0 0 1 1 1 0 0 0 0 13 1 1631.8705 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 118 130 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.0087072 27.098 By MS/MS 1 1.7228 1.8378 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7228 1.8378 NaN 1 0 Median NaN NaN NaN 0 0 Median 4479500 1461100 3018300 0 0 0 0 0 0 0 0 0 0 0 0 4479500 1461100 3018300 0 0 0 + 24513 750 25697 130089 130934 130934 1 MLEVFVLK KSEQESGNGRDVLMRMLEVFVLKFHTIARY GRDVLMRMLEVFVLKFHTIARYQLSAIFKK R M L L K F 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 8 0 977.56198 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 448 455 TRRAP Transformation/transcription domain-associated protein yes no 2 0.069362 30.612 By MS/MS By matching 1 1 1.1334 1.1346 0.48346 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0501 1.1385 NaN 1 0 Median 1.2234 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3532700 1584600 1948100 0 0 0 0 0 0 3321600 1503900 1817700 211070 80687 130380 0 0 0 0 0 0 24514 991 25698 130090;130091 130935 130935 1 MLFATPPSSTYEK YTFAEMPWYQRRIAKMLFATPPSSTYEKAL AKMLFATPPSSTYEKALGYFHRAEQGEEKQ K M L E K A 1 0 0 0 0 0 1 0 0 0 1 1 1 1 2 2 2 0 1 0 0 0 13 0 1470.7065 H0YB83;E5RH53;Q96DB5;H0YC67;H0YB03;H0YC27;H0YBD9 H0YB83 177 189 RMDN1 Regulator of microtubule dynamics protein 1 yes no 2 7.9643E-07 102.52 By MS/MS By MS/MS By MS/MS 1 2 1 0.74827 0.69981 22.41 4 Median 0.76335 0.7068 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73113 0.68989 0.61284 2 2 Median 1.3184 1.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36596000 21453000 15144000 24896000 14763000 10133000 0 0 0 10801000 6335500 4465200 899200 353830 545370 0 0 0 0 0 0 24515 845 25699 130092;130093;130094;130095 130936;130937;130938;130939;130940;130941 130936 6 MLFDYLADK DPETTRQMQSTRDGRMLFDYLADKHGFRQE STRDGRMLFDYLADKHGFRQEYLDTLYRYA R M L D K H 1 0 0 2 0 0 0 0 0 0 2 1 1 1 0 0 0 0 1 0 0 0 9 0 1114.5369 P60228;E5RGA2;H0YBR5;E5RIT4 P60228 112 120 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.042986 32.892 By matching By matching By MS/MS By matching 1 1 1 1 1.1788 1.0847 5.4554 4 Median 1.0879 1.0184 NaN 1 0 Median 1.1965 1.0467 NaN 1 0 Median 1.1614 1.1397 NaN 1 0 Median 1.2601 1.1241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16894000 7789700 9104400 7519800 3514600 4005100 1049900 464030 585890 5987600 2768100 3219500 2336900 1043000 1293900 0 0 0 0 0 0 24516 2524 25700 130096;130097;130098;130099 130942 130942 1 MLFKDDYPSSPPK GKKGTPWEGGLFKLRMLFKDDYPSSPPK__ LRMLFKDDYPSSPPK_______________ R M L P K - 0 0 0 2 0 0 0 0 0 0 1 2 1 1 3 2 0 0 1 0 0 0 13 1 1523.733 H3BPC4;H3BQQ9;B0QYN7;P63279 H3BPC4 58 70 UBE2I SUMO-conjugating enzyme UBC9 yes no 2;3 1.5774E-07 118.28 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 7 4 1 0.66204 0.66979 12.022 20 Median 0.64509 0.63884 5.6916 5 0 Median 0.8869 0.78406 0.91307 3 0 Median 0.63383 0.64017 7.1462 7 0 Median 0.81613 0.73534 15.547 4 0 Median 0.71814 0.82565 NaN 1 0 Median NaN NaN NaN 0 0 Median 407170000 238680000 168490000 198640000 118180000 80453000 32903000 16828000 16075000 142690000 86210000 56476000 31671000 16651000 15020000 1269100 802000 467080 0 0 0 24517 558 25701;25702 130100;130101;130102;130103;130104;130105;130106;130107;130108;130109;130110;130111;130112;130113;130114;130115;130116;130117;130118;130119 130943;130944;130945;130946;130947;130948;130949;130950;130951;130952;130953;130954;130955;130956;130957;130958;130959;130960;130961;130962;130963;130964;130965;130966;130967;130968;130969;130970;130971;130972;130973;130974;130975;130976;130977;130978;130979;130980 130979 219 38 MLFYSFFK ______________________________ ______________________________ - M L F K S 0 0 0 0 0 0 0 0 0 0 1 1 1 3 0 1 0 0 1 0 0 0 8 0 1081.5307 Q9Y333 Q9Y333 1 8 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.039331 37.021 By matching By MS/MS By matching By matching 1 1 1 1 1.1317 1.0041 8.2176 4 Median 1.1184 1.022 NaN 1 0 Median 1.3687 1.141 NaN 1 0 Median 1.0292 0.98656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1451 0.94058 NaN 1 0 Median 18083000 8488800 9593700 5791500 2599700 3191800 2444800 1027700 1417200 9730000 4811100 4918900 0 0 0 0 0 0 116220 50309 65909 24518 4405 25703 130120;130121;130122;130123 130981 130981 1 MLGALYMR IIVEFIKNEDFKYVRMLGALYMRLTGTAID EDFKYVRMLGALYMRLTGTAIDCYKYLEPL R M L M R L 1 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 1 0 0 0 8 0 953.48268 Q8NAV1 Q8NAV1 101 108 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 0.0035455 89.673 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1685 1.1632 34.298 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2256 1.3353 NaN 1 1 Median 1.3997 1.2021 NaN 1 0 Median 1.114 1.1255 NaN 1 0 Median 0.74171 0.62238 NaN 1 0 Median 27150000 10984000 16166000 0 0 0 0 0 0 10409000 3794900 6614000 467530 228860 238670 14569000 6428900 8140300 1704300 531750 1172600 24519 3400 25704 130124;130125;130126;130127 130982;130983 130983 2 MLGEALSK RQKIVQAEGEAEAAKMLGEALSKNPGYIKL GEAEAAKMLGEALSKNPGYIKLRKIRAAQN K M L S K N 1 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 0 0 0 0 0 0 8 0 847.44734 J3KPX7;Q99623;F5GY37 J3KPX7 237 244 PHB2 Prohibitin-2 yes no 2 0.0085368 62.573 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.4775 1.2452 15.931 5 Median 1.0352 0.9377 NaN 1 0 Median 1.4909 1.2528 0.86605 2 0 Median 1.0476 1.0021 NaN 1 0 Median 1.6084 1.352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97873000 43808000 54065000 57067000 27207000 29859000 31954000 12783000 19171000 3522200 1765600 1756500 5330200 2052900 3277400 0 0 0 0 0 0 24520 1313 25705;25706 130128;130129;130130;130131;130132 130984;130985;130986;130987;130988;130989;130990 130985 435 7 MLGHLVSNAPR LEHSGIGRIKEQSARMLGHLVSNAPRLIRP QSARMLGHLVSNAPRLIRPYMEPILKALIL R M L P R L 1 1 1 0 0 0 0 1 1 0 2 0 1 0 1 1 0 0 0 1 0 0 11 0 1193.6339 P42345 P42345 756 766 MTOR Serine/threonine-protein kinase mTOR yes yes 3 0.0023475 57.836 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3333600 0 3333600 1684900 0 1684900 1648700 0 1648700 0 0 0 0 0 0 0 0 0 0 0 0 24521 2310 25707 130133;130134 130991;130992 130992 2 MLGPEGGEGFVVK ______________________________ ______________________________ M M L V K L 0 0 0 0 0 0 2 4 0 0 1 1 1 1 1 0 0 0 0 2 0 0 13 0 1318.6591 P52597;A0A1B0GW42 P52597 2 14 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 4.5812E-07 102.52 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 1 4 3 8 4 0.98315 0.88424 32.37 21 Median 0.92235 0.87148 12.027 2 0 Median 1.059 0.9116 NaN 1 0 Median 0.90657 0.86348 26.455 4 0 Median 1.0089 0.84447 4.0785 3 0 Median 0.84317 0.88424 11.407 7 1 Median 1.0745 0.89415 69.736 4 0 Median 209540000 112570000 96973000 3516800 1565900 1950900 135620 66385 69236 94295000 51555000 42740000 586090 278910 307180 99587000 53301000 46286000 11423000 5803600 5619500 24522 2452 25708;25709 130135;130136;130137;130138;130139;130140;130141;130142;130143;130144;130145;130146;130147;130148;130149;130150;130151;130152;130153;130154;130155;130156 130993;130994;130995;130996;130997;130998;130999;131000;131001;131002;131003;131004;131005 130994 1146 13 MLGQMTDQVADLR LCAGKERREILGTCKMLGQMTDQVADLRAR CKMLGQMTDQVADLRARGQGSSPVAMQKAQ K M L L R A 1 1 0 2 0 2 0 1 0 0 2 0 2 0 0 0 1 0 0 1 0 0 13 0 1476.7065 P18206 P18206 327 339 VCL Vinculin yes yes 2 6.4173E-07 132.78 By MS/MS By matching By MS/MS By MS/MS 5 4 1 1 0.96339 0.88066 54.522 11 Median 0.96339 0.95658 16.399 5 0 Median 1.0404 0.90865 9.6375 4 0 Median 0.45908 0.50469 NaN 1 1 Median 0.18982 0.16136 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135240000 69522000 65721000 87812000 42760000 45051000 25431000 12413000 13018000 18331000 11493000 6838100 3668700 2856000 812650 0 0 0 0 0 0 24523 2057 25710;25711 130157;130158;130159;130160;130161;130162;130163;130164;130165;130166;130167 131006;131007;131008;131009;131010;131011;131012;131013 131006 822;823 8 MLGTEGGEGFVVK ______________________________ ______________________________ M M L V K V 0 0 0 0 0 0 2 4 0 0 1 1 1 1 0 0 1 0 0 2 0 0 13 0 1322.654 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;D6RDL0;D6RF17;D6R9D3;E5RJ94 P31943 2 14 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 3.4063E-07 145.34 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 6 10 8 1.1614 1.0648 17.968 33 Median 1.0568 1.0107 NaN 1 0 Median 1.1349 0.97008 44.406 2 0 Median 1.0805 1.0586 21.354 6 0 Median 1.1858 0.99023 9.3985 6 1 Median 1.1512 1.1911 12.092 10 0 Median 1.1768 0.98056 16.337 8 0 Median 218370000 102180000 116190000 3123200 1390700 1732600 4307300 1963700 2343600 57517000 27938000 29579000 5656300 2626100 3030300 132110000 60921000 71190000 15653000 7336300 8316500 24524 1136 25712;25713;25714 130168;130169;130170;130171;130172;130173;130174;130175;130176;130177;130178;130179;130180;130181;130182;130183;130184;130185;130186;130187;130188;130189;130190;130191;130192;130193;130194;130195;130196;130197;130198;130199;130200 131014;131015;131016;131017;131018;131019;131020;131021;131022;131023;131024;131025;131026;131027;131028;131029;131030;131031;131032;131033;131034;131035 131030 379 22 MLGYFSLVGLLR PESVAGEYGRHSLYKMLGYFSLVGLLRLHS LYKMLGYFSLVGLLRLHSLLGDYYQAIKVL K M L L R L 0 1 0 0 0 0 0 2 0 0 4 0 1 1 0 1 0 0 1 1 0 0 12 0 1367.7635 B0QY89;Q9Y262;B0QY90 B0QY89 311 322 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00058519 73.985 By MS/MS By matching By matching By matching 3 3 2 1 1.1925 1.1579 9.6693 9 Median 1.1572 1.1677 6.1729 3 0 Plateau 1.3092 1.1619 6.5387 3 0 Median 1.1355 1.1683 22.367 2 0 Median 1.1963 1.0431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8194100 3764000 4430100 4394100 2148000 2246100 2665300 1061100 1604200 1043000 522370 520600 91755 32530 59225 0 0 0 0 0 0 24525 554 25715;25716 130201;130202;130203;130204;130205;130206;130207;130208;130209 131036;131037;131038;131039 131038 216 4 MLHDYIGDK IFDAISYSKGASVIRMLHDYIGDKDFKKGM GASVIRMLHDYIGDKDFKKGMNMYLTKFQQ R M L D K D 0 0 0 2 0 0 0 1 1 1 1 1 1 0 0 0 0 0 1 0 0 0 9 0 1090.5117 E9PLK3;P55786;A6NEC2;E9PJ74;E9PRQ5 E9PLK3 443 451 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.053179 30.167 By matching By MS/MS By matching 1 2 1 0.81389 0.76251 106.2 4 Median 0.38641 0.67571 NaN 1 0 Median 0.81389 0.76251 9.0165 2 0 Median 5.2151 6.0922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10844000 3122900 7721100 242080 145100 96982 4840700 2337800 2503000 5761200 640010 5121200 0 0 0 0 0 0 0 0 0 24526 960 25717 130210;130211;130212;130213 131040 131040 1 MLHDYIGDKDFK IFDAISYSKGASVIRMLHDYIGDKDFKKGM VIRMLHDYIGDKDFKKGMNMYLTKFQQKNA R M L F K K 0 0 0 3 0 0 0 1 1 1 1 2 1 1 0 0 0 0 1 0 0 0 12 1 1480.7021 E9PLK3;P55786;A6NEC2;E9PJ74;E9PRQ5 E9PLK3 443 454 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 3 0.0055415 41.218 By MS/MS By MS/MS 1 1 1.1592 1.1684 16.8 2 Median 0.98798 1.0375 NaN 1 1 Median 1.3601 1.3157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10054000 4328400 5726100 7251000 3100500 4150600 2803400 1227900 1575500 0 0 0 0 0 0 0 0 0 0 0 0 24527 960 25718 130214;130215 131041;131042;131043 131042 3 MLHDYIGDKDFKK IFDAISYSKGASVIRMLHDYIGDKDFKKGM IRMLHDYIGDKDFKKGMNMYLTKFQQKNAA R M L K K G 0 0 0 3 0 0 0 1 1 1 1 3 1 1 0 0 0 0 1 0 0 0 13 2 1608.797 E9PLK3;P55786;A6NEC2;E9PJ74;E9PRQ5 E9PLK3 443 455 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 3;4 0.00021578 67.997 By MS/MS By MS/MS By matching 3 2 1 1.0648 1.11 13.972 6 Median 1.0496 1.1002 4.1872 3 0 Median 1.1916 1.1626 16.371 2 0 Median 1.3107 1.4626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54122000 25476000 28646000 40564000 19311000 21253000 9287700 4169400 5118400 4269800 1995700 2274100 0 0 0 0 0 0 0 0 0 24528 960 25719 130216;130217;130218;130219;130220;130221 131044;131045;131046;131047;131048;131049 131046 6 MLHVDPHQR YWNSVSDTAKDLVSKMLHVDPHQRLTAALV KDLVSKMLHVDPHQRLTAALVLRHPWIVHW K M L Q R L 0 1 0 1 0 1 0 0 2 0 1 0 1 0 1 0 0 0 0 1 0 0 9 0 1131.5607 E9PGT3;Q15418;B7Z3B5;F2Z2J1;Q15349;Q5SVM7;B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 630 638 RPS6KA1;RPS6KA2;RPS6KA3 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3 no no 2 0.043312 45.718 By MS/MS 1 1.343 1.1773 NaN 1 Median NaN NaN NaN 0 0 Median 1.343 1.1773 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1593500 627820 965710 0 0 0 1593500 627820 965710 0 0 0 0 0 0 0 0 0 0 0 0 24529 581;926 25720 130222 131050 131050 1 MLIEKDPSLEK QVYRQDCETFGMVVKMLIEKDPSLEKSIQF MVVKMLIEKDPSLEKSIQFALRQNLHEIGE K M L E K S 0 0 0 1 0 0 2 0 0 1 2 2 1 0 1 1 0 0 0 0 0 0 11 1 1301.6901 F8W0Q9;Q8NEY8;F8WF16;B7Z8L1;F8W6A0 F8W0Q9 336 346 PPHLN1 Periphilin-1 yes no 2;3 5.8367E-05 128.86 By matching By MS/MS 1 3 0.77156 0.82357 19.939 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59533 0.62773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86072 0.91871 14.228 3 1 Median NaN NaN NaN 0 0 Median 33331000 18437000 14894000 0 0 0 0 0 0 2182300 1249600 932700 0 0 0 31149000 17188000 13961000 0 0 0 24530 1080 25721 130223;130224;130225;130226 131051;131052;131053;131054;131055 131054 5 MLINQHTLLFGGDTNPVHPK QYFLDRFYTNRISFRMLINQHTLLFGGDTN HTLLFGGDTNPVHPKHIGSIDPTCNVADVV R M L P K H 0 0 2 1 0 1 0 2 2 1 3 1 1 1 2 0 2 0 0 1 0 0 20 0 2231.1521 Q15120 Q15120 163 182 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 4 0.00045464 29.384 By matching By MS/MS By matching 1 2 1 0.71395 0.69661 38.693 4 Median NaN NaN NaN 0 0 Median 0.84534 0.72879 NaN 1 0 Median 0.52433 0.54096 29.376 2 0 Median 1.2654 1.1289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18123000 11053000 7070000 0 0 0 239140 141200 97942 17126000 10578000 6547300 758660 333900 424770 0 0 0 0 0 0 24531 2929 25722 130227;130228;130229;130230 131056;131057 131056 2 MLISILTER EAIQKAIRGIGTDEKMLISILTERSNAQRQ IGTDEKMLISILTERSNAQRQLIVKEYQAA K M L E R S 0 1 0 0 0 0 1 0 0 2 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1074.6107 P12429;D6RA82;D6RFG5;D6RAZ8;D6RCA8 P12429 40 48 ANXA3 Annexin A3;Annexin yes no 2 0.0040235 61.962 By MS/MS By matching 2 2 1.3796 1.2796 22.19 4 Median 1.3882 1.3216 12.004 2 0 Median 1.2364 1.0852 30.735 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21000000 9069800 11930000 17795000 7603300 10192000 3204900 1466600 1738400 0 0 0 0 0 0 0 0 0 0 0 0 24532 1981 25723;25724 130231;130232;130233;130234 131058;131059;131060 131060 762 3 MLITILGTVKPNANR IVPYNLPLPGGVVPRMLITILGTVKPNANR MLITILGTVKPNANRIALDFQRGNDVAFHF R M L N R I 1 1 2 0 0 0 0 1 0 2 2 1 1 0 1 0 2 0 0 1 0 0 15 1 1639.9443 P17931;G3V3R6 P17931 130 144 LGALS3 Galectin-3;Galectin yes no 2;3 1.72E-08 129.16 By MS/MS By matching By MS/MS By matching 4 3 1 1 1.006 1.0349 21.774 9 Median 1.3477 1.337 31.68 4 0 Linear 0.93493 0.84573 3.5509 3 0 Median 1.006 1.0984 NaN 1 0 Median 1.0966 1.0349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37995000 16842000 21153000 30691000 13677000 17015000 4346800 2043000 2303800 2704800 1032300 1672500 251840 90022 161810 0 0 0 0 0 0 24533 2049 25725;25726 130235;130236;130237;130238;130239;130240;130241;130242;130243 131061;131062;131063;131064;131065;131066;131067 131065 813 7 MLIYDPAK HVKNLDENGLDLLSKMLIYDPAKRISGKMA GLDLLSKMLIYDPAKRISGKMALNHPYFND K M L A K R 1 0 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 8 0 949.49429 P06493;A0A024QZP7 P06493 267 274 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 0.028767 60.76 By MS/MS 1 0.72747 0.67653 NaN 1 Median 0.72747 0.67653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9095600 5165300 3930300 9095600 5165300 3930300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24534 1871 25727 130244 131068 131068 1 MLIYDPAKR HVKNLDENGLDLLSKMLIYDPAKRISGKMA LDLLSKMLIYDPAKRISGKMALNHPYFNDL K M L K R I 1 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 9 1 1105.5954 P06493;A0A024QZP7 P06493 267 275 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 0.0066618 74.127 By MS/MS By MS/MS By MS/MS 1 1 2 0.97243 0.91769 40.282 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3479 1.4647 NaN 1 1 Median 0.82269 0.77638 23.647 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10381000 4838100 5542700 0 0 0 0 0 0 7491000 3235800 4255200 2889700 1602200 1287500 0 0 0 0 0 0 24535 1871 25728;25729 130245;130246;130247;130248 131069;131070;131071;131072 131072 626 4 MLKDYDWINAER KHKREAEDGAAKVSKMLKDYDWINAERHLF VSKMLKDYDWINAERHLFGQPNSAYDFKTN K M L E R H 1 1 1 2 0 0 1 0 0 1 1 1 1 0 0 0 0 1 1 0 0 0 12 1 1552.7344 O95347;A0A0C4DGE5 O95347 934 945 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 0.0004706 62.303 By MS/MS By matching By MS/MS By matching 3 1 3 1 1.0338 1.0734 44.889 7 Median 1.0319 1.044 53.24 3 0 Median 1.8851 1.6822 NaN 1 0 Median 1.159 1.3156 1.1487 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93275 0.82837 NaN 1 0 Median 24065000 10118000 13947000 13706000 6412300 7293400 314130 92320 221810 9888400 3559500 6328800 0 0 0 0 0 0 156320 53730 102590 24536 1766 25730;25731 130249;130250;130251;130252;130253;130254;130255;130256 131073;131074;131075;131076;131077 131075 567 5 MLLADQGQSWK TVVYFPVRGRCAALRMLLADQGQSWKEEVV AALRMLLADQGQSWKEEVVTVETWQEGSLK R M L W K E 1 0 0 1 0 2 0 1 0 0 2 1 1 0 0 1 0 1 0 0 0 0 11 0 1275.6282 P09211;A8MX94;A0A087X2E9 P09211 20 30 GSTP1 Glutathione S-transferase P yes no 2 4.5349E-30 206.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 1 1 1.1767 1.0201 36.983 14 Median 1.0693 0.98225 51.075 5 2 Median 1.2199 1.0184 13.537 5 1 Median 1.5503 1.4535 45.261 2 1 Median 1.1403 0.9414 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2263 1.0322 NaN 1 0 Median 384030000 184050000 199980000 305860000 151930000 153930000 33043000 14480000 18562000 42352000 16321000 26031000 967360 421720 545650 0 0 0 1809000 897300 911660 24537 1912 25732;25733 130257;130258;130259;130260;130261;130262;130263;130264;130265;130266;130267;130268;130269;130270 131078;131079;131080;131081;131082;131083;131084;131085;131086;131087;131088;131089;131090;131091;131092;131093;131094;131095 131079 691 18 MLLDPMGGIVMTNDGNAILR ADIIRTCLGPKSMMKMLLDPMGGIVMTNDG MGGIVMTNDGNAILREIQVQHPAAKSMIEI K M L L R E 1 1 2 2 0 0 0 3 0 2 3 0 3 0 1 0 1 0 0 1 0 0 20 0 2130.0636 P49368;B4DUR8;E9PRC8;Q5SZX6;Q5SZX9 P49368 49 68 CCT3 T-complex protein 1 subunit gamma yes no 2;3 7.5691E-15 98.531 By MS/MS By MS/MS By MS/MS 3 4 3 0.99175 0.96443 11.781 10 Median 1.04 0.99469 5.1605 3 0 Median 0.98176 0.85997 1.6993 4 0 Median 0.96759 1.012 10.697 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66327000 31715000 34611000 45976000 22157000 23819000 14005000 6484300 7520200 6346300 3074400 3271900 0 0 0 0 0 0 0 0 0 24538 2379 25734;25735 130271;130272;130273;130274;130275;130276;130277;130278;130279;130280 131096;131097;131098;131099;131100;131101;131102;131103;131104;131105;131106 131098 1096 11 MLLDSEQHPCQLK LAIQLGAQALLGAAKMLLDSEQHPCQLKDN AKMLLDSEQHPCQLKDNVCSPGGATIHALH K M L L K D 0 0 0 1 1 2 1 0 1 0 3 1 1 0 1 1 0 0 0 0 0 0 13 0 1597.7592 Q96C36;A0A087WTV6;J3KR12;A0A087WZR9 Q96C36 216 228 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 3 0.038057 27.862 By MS/MS 1 1.6295 1.3716 NaN 1 Median NaN NaN NaN 0 0 Median 1.6295 1.3716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2897800 810660 2087100 0 0 0 2897800 810660 2087100 0 0 0 0 0 0 0 0 0 0 0 0 24539 3615 25736 130281 131107 131107 1 MLLDSVLTTHER TKTIEVLQLQDQGSKMLLDSVLTTHERVVQ GSKMLLDSVLTTHERVVQISGLSATFAEIF K M L E R V 0 1 0 1 0 0 1 0 1 0 3 0 1 0 0 1 2 0 0 1 0 0 12 0 1413.7286 F5H702;Q96GC5 F5H702 45 56 MRPL48 39S ribosomal protein L48, mitochondrial yes no 2;3 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS 3 3 1 0.93119 0.88161 30.149 7 Median 0.91415 0.87927 35.617 3 0 Median 1.3581 1.1276 28.601 3 0 Median 0.93119 0.88161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48123000 24741000 23383000 41227000 22001000 19226000 4369800 1926600 2443200 2526600 812960 1713700 0 0 0 0 0 0 0 0 0 24540 1044 25737 130282;130283;130284;130285;130286;130287;130288 131108;131109;131110;131111;131112;131113;131114;131115 131108 8 MLLETDHINQIGYR SMQGSPPLFLCLLWKMLLETDHINQIGYRV KMLLETDHINQIGYRVLERIGARALVAHVR K M L Y R V 0 1 1 1 0 1 1 1 1 2 2 0 1 0 0 0 1 0 1 0 0 0 14 0 1701.8508 Q5JWT2;Q9ULK4 Q5JWT2 802 815 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 3 2.4424E-08 98.803 By matching By matching By MS/MS 1 1 1 1.3163 1.3076 9.5011 3 Median 1.3163 1.3076 NaN 1 0 Median 1.5276 1.3521 NaN 1 0 Median 1.0281 1.1308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8372500 3751800 4620700 1767100 735520 1031600 564090 237920 326170 6041300 2778400 3262900 0 0 0 0 0 0 0 0 0 24541 3059 25738 130289;130290;130291 131116;131117 131116 2 MLLGMYR PQLLKVQLGDQTDSKMLLGMYRCTDVPGEF LGDQTDSKMLLGMYRCTDVPGEFVWQPGTL K M L Y R C 0 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 1 0 0 0 7 0 882.44557 Q9NU22;Q5T795 Q9NU22 367 373 MDN1 Midasin yes no 2 0.007011 90.939 By MS/MS By matching 1 1 1.2643 1.212 16.468 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0179 1.0788 NaN 1 0 Median 1.5702 1.3617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7936400 4005600 3930800 0 0 0 0 0 0 7694500 3920900 3773600 241860 84702 157160 0 0 0 0 0 0 24542 4112 25739 130292;130293 131118;131119 131118 2 MLLGNKCDMDDKR WLRNIDEHANEDVERMLLGNKCDMDDKRVV ERMLLGNKCDMDDKRVVPKGKGEQIAREHG R M L K R V 0 1 1 3 1 0 0 1 0 0 2 2 2 0 0 0 0 0 0 0 0 0 13 2 1594.7266 P61026 P61026 118 130 RAB10 Ras-related protein Rab-10 yes yes 3 0.05201 15.941 By MS/MS 1 1.1326 0.98204 NaN 1 Median NaN NaN NaN 0 0 Median 1.1326 0.98204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 545690 264680 281010 0 0 0 545690 264680 281010 0 0 0 0 0 0 0 0 0 0 0 0 24543 2540 25740 130294 131120 131120 1 MLLHEGQHPAQLR LAHRIAAQTLLGTAKMLLHEGQHPAQLRSD AKMLLHEGQHPAQLRSDVCTPGGTTIYGLH K M L L R S 1 1 0 0 0 2 1 1 2 0 3 0 1 0 1 0 0 0 0 0 0 0 13 0 1528.7933 A0A0A0MQS1;Q53H96;B5MD87 A0A0A0MQS1 231 243 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 3 0.00056562 49.12 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.88055 0.84726 48.977 4 Median 0.76112 0.72069 NaN 1 0 Median 0.56001 0.47458 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0187 0.99605 NaN 1 0 Median 1.8562 1.5066 NaN 1 0 Median 13362000 7980500 5381700 8075100 5207200 2867900 2709100 1696800 1012300 0 0 0 0 0 0 1373900 623580 750330 1204100 452880 751190 24544 146 25741 130295;130296;130297;130298 131121;131122 131121 2 MLLHSEQHPGQLK LAVRLGAQALLGAAKMLLHSEQHPGQLKDN AKMLLHSEQHPGQLKDNVSSPGGATIHALH K M L L K D 0 0 0 0 0 2 1 1 2 0 3 1 1 0 1 1 0 0 0 0 0 0 13 0 1516.782 P32322;E2QRB3;J3KQ22;J3QKT4 P32322 216 228 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial;Pyrroline-5-carboxylate reductase yes no 3 0.0011458 41.401 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2286 1.1028 33.463 4 Median 0.86865 0.80446 NaN 1 1 Median 1.6727 1.4038 NaN 1 0 Median 0.90248 0.86637 NaN 1 0 Median 1.8518 1.5599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21379000 10916000 10463000 10376000 6339600 4036500 5503400 2267200 3236200 2193400 1130900 1062500 3306400 1178200 2128200 0 0 0 0 0 0 24545 2218 25742 130299;130300;130301;130302 131123;131124;131125;131126;131127 131124 5 MLLLEILHEIK FQLFTGNKIQDEENKMLLLEILHEIKSFPL EENKMLLLEILHEIKSFPLHFDENSFFAGD K M L I K S 0 0 0 0 0 0 2 0 1 2 4 1 1 0 0 0 0 0 0 0 0 0 11 0 1350.7945 Q96HE7;G3V2H0 Q96HE7 342 352 ERO1L ERO1-like protein alpha yes no 2 0.0024829 58.676 By matching By MS/MS 1 1 1.2897 1.1854 12.653 2 Median 1.3142 1.2964 NaN 1 0 Median 1.2656 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3026400 1352800 1673600 478410 226230 252180 2548000 1126600 1421400 0 0 0 0 0 0 0 0 0 0 0 0 24546 3666 25743 130303;130304 131128 131128 1801 1 MLLNDFLNDQNR FHSPYCKLVQKSLARMLLNDFLNDQNRDKN LARMLLNDFLNDQNRDKNSIYSGLEAFGDV R M L N R D 0 1 3 2 0 1 0 0 0 0 3 0 1 1 0 0 0 0 0 0 0 0 12 0 1491.714 Q01581 Q01581 278 289 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 2 4.8065E-06 136.63 By MS/MS By MS/MS By matching 2 2 1 0.9548 0.824 28.03 5 Median 0.83296 0.82973 22.876 2 0 Median 1.021 0.87031 7.7315 2 0 Median NaN NaN NaN 0 0 Median 0.54868 0.48389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16488000 7995100 8492400 7066000 3620900 3445100 9260300 4278700 4981600 0 0 0 161240 95541 65702 0 0 0 0 0 0 24547 2687 25744 130305;130306;130307;130308;130309 131129;131130;131131;131132;131133 131130 5 MLLNLHKK YSITINYRKNELEQKMLLNLHKKSWMEGLT KNELEQKMLLNLHKKSWMEGLTLQDYSEHC K M L K K S 0 0 1 0 0 0 0 0 1 0 3 2 1 0 0 0 0 0 0 0 0 0 8 1 995.59501 O00487 O00487 216 223 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2 0.0094839 70.268 By MS/MS By matching 1 1 0.78246 0.73407 51.655 2 Median 1.083 1.0577 NaN 1 0 Median 0.56531 0.50946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120100 3263600 2856500 4410300 2075000 2335300 1709800 1188500 521210 0 0 0 0 0 0 0 0 0 0 0 0 24548 1468 25745 130310;130311 131134;131135 131134 2 MLLPNILLTGTPGVGK ______________________________ LLPNILLTGTPGVGKTTLGKELASKSGLKY - M L G K T 0 0 1 0 0 0 0 3 0 1 4 1 1 0 2 0 2 0 0 1 0 0 16 0 1622.9429 A0A087WY94;A0A087WVD7;Q9Y3D8 A0A087WY94 1 16 TAF9;AK6 Adenylate kinase isoenzyme 6 yes no 2 0.00013451 55.426 By matching By MS/MS By matching By matching 1 2 1 1 0.94085 0.86006 18.187 5 Median 0.94085 0.88847 NaN 1 0 Median 0.94286 0.81267 8.0158 2 0 Median 1.1955 1.094 NaN 1 0 Median 0.83274 0.67032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2678100 1322900 1355200 151220 87835 63385 2046600 1032800 1013900 351110 140660 210450 129170 61633 67535 0 0 0 0 0 0 24549 42 25746 130312;130313;130314;130315;130316 131136 131136 1 MLLQSSEGR TGSGKTICAEFAILRMLLQSSEGRCVYITP EFAILRMLLQSSEGRCVYITPMEALAEQVY R M L G R C 0 1 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 9 0 1019.507 O75643;A0A494C1A5 O75643 1367 1375 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00042096 130.22 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1.2753 1.1214 11.604 7 Median 1.1011 1.1056 NaN 1 0 Median 1.2221 1.0422 NaN 1 0 Median 1.0272 1.1214 NaN 1 0 Median 1.4694 1.2886 2.5629 2 0 Median NaN NaN NaN 0 0 Median 1.4832 1.2191 20.062 2 2 Median 29968000 13116000 16851000 1684500 885730 798760 8870800 3936500 4934300 10766000 4809300 5956600 3049000 1241000 1808000 0 0 0 5597600 2243900 3353700 24550 1688 25747;25748 130317;130318;130319;130320;130321;130322;130323;130324 131137;131138;131139;131140;131141;131142;131143;131144;131145;131146 131137 554 10 MLLSAPSENDR RGTTEVNIDSETVHRMLLSAPSENDRVQKN TVHRMLLSAPSENDRVQKNLKNTAAEEHVA R M L D R V 1 1 1 1 0 0 1 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 11 0 1231.5867 Q8NFC6 Q8NFC6 1241 1251 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.00014501 108.98 By MS/MS By MS/MS 1 1 0.79986 0.76532 7.8372 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68852 0.72407 NaN 1 0 Median 0.9292 0.80893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18756000 10269000 8487100 0 0 0 0 0 0 16954000 9357900 7595600 1802900 911330 891520 0 0 0 0 0 0 24551 3434 25749 130325;130326 131147;131148;131149;131150 131147 4 MLLSLPEK FLEMLQRDFGYRVYKMLLSLPEKVVSPPEP FGYRVYKMLLSLPEKVVSPPEPEKEEAAKE K M L E K V 0 0 0 0 0 0 1 0 0 0 3 1 1 0 1 1 0 0 0 0 0 0 8 0 929.52559 Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163 559 566 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.0078694 65.252 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 0.97625 0.93795 7.7348 6 Median 0.88331 0.85965 NaN 1 0 Median 1.0757 0.92391 NaN 1 0 Median 0.82715 0.90072 10.28 2 0 Median 1.1169 0.9522 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2204 1.0308 NaN 1 0 Median 18804000 9904100 8900200 6110000 3147000 2963000 4225100 1953700 2271400 7852800 4524300 3328500 376270 169030 207240 0 0 0 240190 110110 130080 24552 3354 25750 130327;130328;130329;130330;130331;130332 131151;131152;131153;131154 131151 4 MLLSPGGVSQPLTASLAR SVSKDQPGRRSQMLRMLLSPGGVSQPLTAS SPGGVSQPLTASLARQRIVEEERERAVQAY R M L A R Q 2 1 0 0 0 1 0 2 0 0 4 0 1 0 2 3 1 0 0 1 0 0 18 0 1796.9819 I3L0U5;Q6PK04 I3L0U5 239 256 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 1.7213E-05 54.143 By matching By MS/MS By matching 1 2 1 0.78151 0.75324 17.556 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67805 0.64988 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8176 0.8764 16.502 2 0 Median 0.83571 0.72751 NaN 1 0 Median 7398000 3780200 3617800 0 0 0 0 0 0 1319300 766070 553260 0 0 0 5476900 2699900 2777000 601780 314240 287540 24553 1274 25751;25752 130333;130334;130335;130336 131155;131156;131157 131155 424 3 MLLVDELR NDRERIQEVADELQKMLLVDELRDAVLLLF VADELQKMLLVDELRDAVLLLFANKQDLPN K M L L R D 0 1 0 1 0 0 1 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 8 0 987.5423 P18085;C9JPM4;C9JAK5;U3KQF2 P18085 110 117 ARF4 ADP-ribosylation factor 4 yes no 2 0.017569 48.561 By matching By MS/MS By MS/MS By matching By matching 2 1 3 1 1 1.2224 1.0923 33.565 8 Median 1.276 1.248 23.046 2 0 Median 1.3438 1.1253 NaN 1 0 Median 0.74524 0.79882 45.632 3 0 Median 0.79487 0.69909 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4995 1.225 NaN 1 0 Median 11800000 5549100 6251000 4283000 1444300 2838700 524480 224550 299930 6286600 3536500 2750100 304410 173260 131150 0 0 0 401580 170490 231080 24554 2055 25753;25754 130337;130338;130339;130340;130341;130342;130343;130344 131158;131159 131158 818 2 MLLYTEVTR DLIPKFLMANGQLVKMLLYTEVTRYLDFKV NGQLVKMLLYTEVTRYLDFKVTEGSFVYKG K M L T R Y 0 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 2 0 1 1 0 0 9 0 1124.59 P31150;G5E9U5;P50395;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395 90 98 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2 0.0005315 117.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 3 2 1.1161 1.0265 24.167 10 Median 1.1214 1.0392 33.447 3 0 Median 1.2051 1.0139 NaN 1 0 Median 1.0933 1.0623 NaN 1 0 Median 1.4679 1.2725 19.51 3 0 Median NaN NaN NaN 0 0 Median 0.97914 0.80747 4.9956 2 0 Median 170600000 79489000 91114000 79294000 36902000 42392000 11210000 4774300 6435400 44661000 20837000 23824000 33020000 15685000 17335000 0 0 0 2418000 1291100 1126900 24555 2411;2201 25755 130345;130346;130347;130348;130349;130350;130351;130352;130353;130354 131160;131161;131162;131163;131164;131165 131165 6 MLMGEVMR ______________________________ ______________________________ - M L M R E 0 1 0 0 0 0 1 1 0 0 1 0 3 0 0 0 0 0 0 1 0 0 8 0 965.44966 G3V2S6;Q9Y5K8;H0YJS0;G3V559;G3V5S7;G3V3T8;G3V341 G3V2S6 1 8 ATP6V1D V-type proton ATPase subunit D yes no 2 0.018576 67.981 By MS/MS 1 0.95394 0.89297 NaN 1 Median 0.95394 0.89297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16470000 7982100 8488300 16470000 7982100 8488300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24556 1108 25756 130355 131166 131166 1 MLNGLEDSIGLSK LAMKGDVENIEVVQKMLNGLEDSIGLSKMV QKMLNGLEDSIGLSKMVFINNIALAQIKNN K M L S K M 0 0 1 1 0 0 1 2 0 1 3 1 1 0 0 2 0 0 0 0 0 0 13 0 1375.7017 P42704 P42704 1164 1176 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 1.137E-05 96.229 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0831 1.0558 71.071 5 Median 2.1097 2.1081 99.388 2 0 Median 1.4648 1.2356 NaN 1 0 Median 0.98122 1.0558 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.58452 0.63232 NaN 1 0 Median NaN NaN NaN 0 0 Median 58980000 26302000 32678000 25325000 10537000 14788000 19198000 7794900 11403000 6730600 3343000 3387600 0 0 0 7726100 4626900 3099200 0 0 0 24557 2315 25757 130356;130357;130358;130359;130360 131167;131168;131169;131170;131171;131172 131169 6 MLNIHPSLLPSFK MRILSGPFVQKWNGKMLNIHPSLLPSFKGS GKMLNIHPSLLPSFKGSNAHEQALETGVTV K M L F K G 0 0 1 0 0 0 0 0 1 1 3 1 1 1 2 2 0 0 0 0 0 0 13 0 1495.8221 P22102;A0A140TA71 P22102 911 923 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0039502 42.395 By MS/MS By matching 1 1 1.0044 0.91902 4.9407 2 Median 0.97585 0.9517 NaN 1 0 Median 1.0338 0.88747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5982400 3046000 2936400 5106900 2595900 2511000 875530 450110 425420 0 0 0 0 0 0 0 0 0 0 0 0 24558 2098 25758 130361;130362 131173 131173 1 MLNINKK SLPEEEQQRVLGEEKMLNINKKQATSPASK QRVLGEEKMLNINKKQATSPASKKPAQEGG K M L K K Q 0 0 2 0 0 0 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 7 1 859.49496 P17480;E9PKP7 P17480 379 385 UBTF Nucleolar transcription factor 1 yes no 2 0.039997 51.036 By matching By matching By MS/MS 1 1 1 1.0572 1.1822 5.5551 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93592 1.0656 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0572 1.1822 NaN 1 0 Median 1.2799 1.1614 NaN 1 0 Median 1599600 752120 847430 0 0 0 0 0 0 167510 93256 74250 0 0 0 968650 456200 512450 463400 202670 260730 24559 2040 25759 130363;130364;130365 131174 131174 1 MLPDKDCR DVGQTVDDPYATFVKMLPDKDCRYALYDAT PYATFVKMLPDKDCRYALYDATYETKESKK K M L C R Y 0 1 0 2 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 8 1 1033.4685 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 74 81 CFL1 Cofilin-1 yes no 2 0.037477 65.038 By matching By MS/MS 1 1 1.0241 0.96204 2.6749 2 Median 0.98026 0.98041 NaN 1 0 Median 1.0699 0.94401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3443200 1605500 1837700 315650 156420 159230 3127600 1449100 1678500 0 0 0 0 0 0 0 0 0 0 0 0 24560 2118 25760 130366;130367 131175;131176 131175 2 MLPEIDQNKDR WLTELFQQSKVNMQKMLPEIDQNKDRMLEI NMQKMLPEIDQNKDRMLEILEGKGLSFLFP K M L D R M 0 1 1 2 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 11 1 1357.666 P78344;D3DQV9;H0Y3P2 P78344 704 714 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.0048222 36.847 By MS/MS By matching 1 1 1.2222 1.246 33.91 2 Median 1.5262 1.5836 NaN 1 0 Median 0.97871 0.98037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3801400 1817900 1983500 2316900 993140 1323700 1484500 824780 659750 0 0 0 0 0 0 0 0 0 0 0 0 24561 2639 25761 130368;130369 131177 131177 1 MLPLSLLK ______________________________ ______________________________ - M L L K T 0 0 0 0 0 0 0 0 0 0 4 1 1 0 1 1 0 0 0 0 0 0 8 0 913.56706 V9GZ56;Q9Y4Z0;M0QXB0 V9GZ56 1 8 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 2 0.042262 36.395 By matching By matching By MS/MS 1 2 1 1.069 0.95318 9.5989 4 Median 1.0072 0.9528 NaN 1 0 Median 1.1697 0.99519 6.0432 2 0 Median 0.83982 0.82414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5689300 3002500 2686800 2577100 1379800 1197400 159110 67261 91850 2953000 1555400 1397600 0 0 0 0 0 0 0 0 0 24562 4451 25762 130370;130371;130372;130373 131178 131178 1 MLPPPPMWR PWPRPPPRRFSPPRRMLPPPPMWRRSPPRM FSPPRRMLPPPPMWRRSPPRMRRRSRSPRR R M L W R R 0 1 0 0 0 0 0 0 0 0 1 0 2 0 4 0 0 1 0 0 0 0 9 0 1123.5671 H3BV80;H3BMM9;H3BTC0;Q15287;H3BPG5 H3BV80 162 170 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 2 0.0057537 64.803 By MS/MS By MS/MS By matching 1 4 3 0.6988 0.65411 17.946 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44299 0.44466 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60677 0.60759 13.558 4 0 Median 0.85425 0.72041 2.7721 3 0 Plateau 30308000 18700000 11608000 0 0 0 0 0 0 3793900 2593900 1200000 0 0 0 24921000 15284000 9636700 1592900 821590 771260 24563 1212 25763;25764 130374;130375;130376;130377;130378;130379;130380;130381 131179;131180;131181;131182;131183;131184;131185 131185 406 7 MLPQAATEDDIR DEEEEEKASNIVMLRMLPQAATEDDIRGQL MLRMLPQAATEDDIRGQLQSHGVQAREVRL R M L I R G 2 1 0 2 0 1 1 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 12 0 1358.65 P98175 P98175 135 146 RBM10 RNA-binding protein 10 yes yes 2 0.0003022 88.681 By matching By matching By MS/MS By MS/MS 1 2 2 1 1.0596 0.90779 78.244 6 Median 0.86263 0.80588 NaN 1 0 Median 1.2782 1.0867 8.5945 2 0 Median 1.9299 2.1801 140.95 2 0 Median 0.92232 0.78429 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30449000 11503000 18946000 6168400 2757800 3410600 5133100 2686900 2446200 15845000 4294000 11551000 3301900 1764400 1537500 0 0 0 0 0 0 24564 2671 25765 130382;130383;130384;130385;130386;130387 131186;131187 131186 1 MLPQAATEDDIRGQLQSHGVQAR DEEEEEKASNIVMLRMLPQAATEDDIRGQL DDIRGQLQSHGVQAREVRLMRNKSSGQSRG R M L A R E 3 2 0 2 0 4 1 2 1 1 2 0 1 0 1 1 1 0 0 1 0 0 23 1 2520.2503 P98175 P98175 135 157 RBM10 RNA-binding protein 10 yes yes 3;4 1.5353E-18 84.762 By MS/MS By matching 3 1 0.79664 0.97861 28.403 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72528 0.94394 21.391 3 0 Plateau NaN NaN NaN 0 0 Median 0.47366 0.51464 NaN 1 0 Median NaN NaN NaN 0 0 Median 53062000 30776000 22286000 0 0 0 0 0 0 49416000 28571000 20845000 0 0 0 3645800 2204900 1440900 0 0 0 24565 2671 25766 130388;130389;130390;130391 131188;131189;131190 131189 3 MLPSFVR ELGLRKQTHNNAVVKMLPSFVRRTPDGTEN THNNAVVKMLPSFVRRTPDGTENGDFLALD K M L V R R 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 1 0 0 7 0 848.45784 P19367 P19367 511 517 HK1 Hexokinase-1 yes yes 2 0.025249 54.525 By MS/MS By matching By matching By matching 1 3 1 1 1.2371 1.0986 31.459 6 Median 0.97392 0.93811 NaN 1 0 Median 1.29 1.0919 43.084 3 0 Median 1.0319 1.1053 NaN 1 0 Median 1.5819 1.3582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25180000 12010000 13170000 13069000 6636300 6432900 10227000 4516500 5710200 1291800 613810 677990 592430 243550 348880 0 0 0 0 0 0 24566 2064 25767 130392;130393;130394;130395;130396;130397 131191;131192 131191 2 MLPTFVR KNGLSRDFNPTATVKMLPTFVRSIPDGSEK FNPTATVKMLPTFVRSIPDGSEKGDFIALD K M L V R S 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 1 0 0 7 0 862.47349 P19367;B1AR62;Q2TB90;E9PB90;P52789;P52790 P19367 63 69 HK1;HKDC1;HK2;HK3 Hexokinase-1;Putative hexokinase HKDC1;Hexokinase;Hexokinase-2;Hexokinase-3 no no 2 0.047302 41.502 By MS/MS By matching By matching 1 1 1 1.2994 1.2518 19.597 3 Median 1.2994 1.2518 NaN 1 0 Median 1.2033 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8052 1.5413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17453000 7850800 9602400 11649000 5233500 6415400 4892300 2273000 2619400 0 0 0 911960 344370 567600 0 0 0 0 0 0 24567 2064;908 25768 130398;130399;130400 131193 131193 1 MLPTIIADNAGYDSADLVAQLR GKEAVAMESYAKALRMLPTIIADNAGYDSA DNAGYDSADLVAQLRAAHSEGNTTAGLDMR R M L L R A 4 1 1 3 0 1 0 1 0 2 3 0 1 0 1 1 1 0 1 1 0 0 22 0 2346.1889 P78371;F5GWF6 P78371 445 466 CCT2 T-complex protein 1 subunit beta yes no 2;3 3.9151E-14 91.207 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1.0026 0.96733 19.551 8 Median 0.95436 0.91309 4.537 2 0 Median 1.0201 0.89431 28.537 4 1 Median 1.0358 1.0553 1.1132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39115000 18768000 20347000 18572000 9008100 9563900 5442100 2681000 2761100 15008000 7019600 7988900 0 0 0 0 0 0 92566 59699 32867 24568 2644 25769 130401;130402;130403;130404;130405;130406;130407;130408;130409 131194;131195;131196;131197;131198;131199;131200;131201;131202;131203;131204 131201 11 MLPTLGGEEGVSR MVCVEYPGVVRDVAKMLPTLGGEEGVSRIY AKMLPTLGGEEGVSRIYADPTKRLELYFRP K M L S R I 0 1 0 0 0 0 2 3 0 0 2 0 1 0 1 1 1 0 0 1 0 0 13 0 1344.6708 Q9Y5Q8;Q5T7U1 Q9Y5Q8 39 51 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.00012318 84.17 By MS/MS By matching By MS/MS 1 1 1 0.80542 0.74097 21.456 3 Median 1.0875 1.0394 NaN 1 1 Median 0.80542 0.6983 NaN 1 0 Median 0.74684 0.74097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36012000 18211000 17801000 9006000 3263500 5742500 2645700 1283700 1362000 24361000 13664000 10697000 0 0 0 0 0 0 0 0 0 24569 4466 25770 130410;130411;130412 131205;131206 131206 2 MLPVSGAFHTR FLQKNSSKFHFRRTRMLPVSGAFHTRLMEP RRTRMLPVSGAFHTRLMEPAVEPLTQALKA R M L T R L 1 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 1 0 0 1 0 0 11 0 1214.623 Q8IVS2 Q8IVS2 262 272 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 3 0.00027253 61.435 By MS/MS 1 1.2797 1.3864 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2797 1.3864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3622200 1454200 2168000 0 0 0 0 0 0 3622200 1454200 2168000 0 0 0 0 0 0 0 0 0 24570 3319 25771 130413 131207 131207 1 MLQADPNK YAWAEDKEHCEEYGRMLQADPNKVSARAKK HCEEYGRMLQADPNKVSARAKKRGLPQLGT R M L N K V 1 0 1 1 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 8 0 915.4484 Q9Y3I0 Q9Y3I0 199 206 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.014079 51.787 By MS/MS By matching 1 1 1.0493 0.96616 24.235 2 Median NaN NaN NaN 0 0 Median 0.93219 0.814 NaN 1 0 Median 1.1812 1.1468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1341600 677300 664280 0 0 0 1144000 571470 572500 197600 105820 91778 0 0 0 0 0 0 0 0 0 24571 4430 25772 130414;130415 131208;131209 131208 2 MLQADPNKVSAR YAWAEDKEHCEEYGRMLQADPNKVSARAKK YGRMLQADPNKVSARAKKRGLPQLGTLGAG R M L A R A 2 1 1 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 12 1 1328.6871 Q9Y3I0 Q9Y3I0 199 210 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.0013659 43.991 By MS/MS 1 1.7301 1.7489 NaN 1 Median 1.7301 1.7489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1833900 791810 1042100 1833900 791810 1042100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24572 4430 25773 130416 131210;131211 131211 2 MLQAPESVLAEHYQDLR IQRFERRGFTLVGMKMLQAPESVLAEHYQD QAPESVLAEHYQDLRRKPFYPALIRYMSSG K M L L R R 2 1 0 1 0 2 2 0 1 0 3 0 1 0 1 1 0 0 1 1 0 0 17 0 1998.9833 Q4TT34;F2Z2X0;O00746;H0Y6J0;A2IDC9 Q4TT34 81 97 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 3 9.83E-08 91.457 By MS/MS 2 0.6462 0.65476 13.923 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6462 0.65476 13.923 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21736000 12580000 9156300 0 0 0 0 0 0 21736000 12580000 9156300 0 0 0 0 0 0 0 0 0 24573 992 25774;25775 130417;130418 131212;131213;131214;131215 131214 348 4 MLQEDELR NDRERVQESADELQKMLQEDELRDAVLLVF SADELQKMLQEDELRDAVLLVFANKQDMPN K M L L R D 0 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1032.491 P84085 P84085 110 117 ARF5 ADP-ribosylation factor 5 yes yes 2 0.0050173 100.45 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24574 2665 25776 130419;130420 131216;131217 131216 2 MLQEDELRDAVLLVFANK NDRERVQESADELQKMLQEDELRDAVLLVF EDELRDAVLLVFANKQDMPNAMPVSELTDK K M L N K Q 2 1 1 2 0 1 2 0 0 0 4 1 1 1 0 0 0 0 0 2 0 0 18 1 2103.1034 P84085 P84085 110 127 ARF5 ADP-ribosylation factor 5 yes yes 3 0.00020129 50.608 By MS/MS 1 1.4377 1.1492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4377 1.1492 NaN 1 1 Median 10047000 5473600 4573000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10047000 5473600 4573000 24575 2665 25777 130421 131218 131218 1 MLQEDPVLFQLYK KFKRKANKELEEKNRMLQEDPVLFQLYKDL NRMLQEDPVLFQLYKDLVVSQVISAEEFWA R M L Y K D 0 0 0 1 0 2 1 0 0 0 3 1 1 1 1 0 0 0 1 1 0 0 13 0 1622.8378 P32780 P32780 117 129 GTF2H1 General transcription factor IIH subunit 1 yes yes 2 0.017029 47.938 By MS/MS 1 0.58377 0.57355 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58377 0.57355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8472600 5334100 3138500 0 0 0 0 0 0 8472600 5334100 3138500 0 0 0 0 0 0 0 0 0 24576 2219 25778 130422 131219 131219 1 MLQEEVTK NTLLSQISTKDGELKMLQEEVTKMNLLNQQ TKDGELKMLQEEVTKMNLLNQQIQEELSRV K M L T K M 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 8 0 976.48993 Q14789 Q14789 1886 1893 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.066122 31.304 By MS/MS By matching By matching 1 1 1 0.63666 0.81191 16.266 3 Plateau NaN NaN NaN 0 0 Median 0.93238 0.81279 NaN 1 0 Median 0.56297 0.64371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63666 0.59433 NaN 1 0 Median 5978600 3317000 2661600 0 0 0 3801500 2015600 1785900 1305600 807190 498370 0 0 0 0 0 0 871600 494240 377360 24577 2900 25779 130423;130424;130425 131220 131220 1 MLQHIDYR ______________________________ TVGKSSKMLQHIDYRMRCILQDGRIFIGTF K M L Y R M 0 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1074.528 P14678;J3QLE5;P63162;J3KRY3;S4R3P3 P14678 9 16 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 0.00045503 127.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 3 5 6 1.1303 1.0082 14.912 21 Median 1.3483 1.3194 12.538 3 0 Median 1.1932 1.0089 NaN 1 1 Median 1.0181 0.99977 5.2809 3 0 Median 1.2909 1.0746 8.7286 3 0 Plateau 1.07 1.0857 11.967 5 0 Median 1.1552 0.93303 17.525 6 1 Median 231960000 110070000 121890000 20055000 9321200 10734000 3914800 1799600 2115200 91779000 45117000 46662000 16200000 6963400 9236300 84640000 40090000 44551000 15369000 6775400 8593400 24578 2009 25780;25781 130426;130427;130428;130429;130430;130431;130432;130433;130434;130435;130436;130437;130438;130439;130440;130441;130442;130443;130444;130445;130446 131221;131222;131223;131224;131225;131226;131227;131228;131229;131230;131231;131232;131233;131234;131235;131236;131237;131238;131239;131240;131241 131230 799 21 MLQIPNR VLAPRYKDQTGGYTRMLQIPNRSLDRAKMA DQTGGYTRMLQIPNRSLDRAKMAVIEYKGN R M L N R S 0 1 1 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 7 0 870.47456 E9PKV2;Q9NRX2 E9PKV2 84 90 MRPL17 39S ribosomal protein L17, mitochondrial yes no 2 0.01526 72.021 By MS/MS By MS/MS 1 1 2.1798 1.9844 31.338 2 Median 2.4806 2.4766 NaN 1 0 Median 1.9154 1.59 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5662000 1844600 3817400 3506500 1070600 2436000 2155500 774070 1381400 0 0 0 0 0 0 0 0 0 0 0 0 24579 952 25782 130447;130448 131242;131243 131243 2 MLQPCGPPADKPEEN ENESKARVRFNLMEKMLQPCGPPADKPEEN MLQPCGPPADKPEEN_______________ K M L E N - 1 0 1 1 1 1 2 1 0 0 1 1 1 0 4 0 0 0 0 0 0 0 15 1 1681.744 Q9BWJ5 Q9BWJ5 72 86 SF3B5 Splicing factor 3B subunit 5 yes yes 2 0.0063338 40.589 By MS/MS 1 0.83164 0.81881 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83164 0.81881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2724300 978090 1746200 0 0 0 0 0 0 2724300 978090 1746200 0 0 0 0 0 0 0 0 0 24580 3873 25783 130449 131244 131244 1 MLQPSSSPLWGK LQKLLFGKVAKDSSRMLQPSSSPLWGKLRV SSRMLQPSSSPLWGKLRVDIKAYLGSAIQL R M L G K L 0 0 0 0 0 1 0 1 0 0 2 1 1 0 2 3 0 1 0 0 0 0 12 0 1329.6751 Q9Y3T9 Q9Y3T9 234 245 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.00055672 75.294 By matching By MS/MS 1 1 0.54699 0.5392 56.423 2 Median NaN NaN NaN 0 0 Median 0.40407 0.36181 NaN 1 0 Median 0.74047 0.80356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19185000 10894000 8291200 0 0 0 1064400 757330 307090 18121000 10136000 7984100 0 0 0 0 0 0 0 0 0 24581 4433 25784 130450;130451 131245;131246 131246 2 MLQQQEQLR EEIENLKKQHDLLKRMLQQQEQLRALQGRQ HDLLKRMLQQQEQLRALQGRQAALLALQHK R M L L R A 0 1 0 0 0 4 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1172.5972 A0A4W8VX11;Q15154;E5RGQ4;E9PGW9;E7EV93 A0A4W8VX11 286 294 PCM1 Pericentriolar material 1 protein yes no 2 0.022052 61.999 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24582 479 25785 130452 131247 131247 1 MLQSIIK ______________________________ ______________________________ - M L I K N 0 0 0 0 0 1 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 7 0 831.48881 G3V556;A0A0A0MTQ5;P56378 G3V556 1 7 C14orf2;MP68 6.8 kDa mitochondrial proteolipid yes no 2 0.013989 78.616 By MS/MS By MS/MS By matching 5 4 1 1.1631 1.0363 23.368 10 Median 1.0938 0.95549 16.959 5 0 Median 1.4569 1.1918 6.6241 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72906 0.59379 NaN 1 0 Median 141800000 60790000 81009000 78378000 35872000 42505000 61410000 23919000 37491000 0 0 0 0 0 0 0 0 0 2011600 998560 1013100 24583 199 25786;25787 130453;130454;130455;130456;130457;130458;130459;130460;130461;130462 131248;131249;131250;131251;131252;131253;131254;131255 131252 84 8 MLQTLKELEAHSAEAR TVTPFTAQQRQAWDRMLQTLKELEAHSAEA LQTLKELEAHSAEARAAAFQHLLLLVGIHL R M L A R A 3 1 0 0 0 1 3 0 1 0 3 1 1 0 0 1 1 0 0 0 0 0 16 1 1825.9356 Q9BQG0;I3L1L3 Q9BQG0 576 591 MYBBP1A Myb-binding protein 1A yes no 3 3.4665E-05 69.594 By MS/MS 1 0.93871 1.0644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93871 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17384000 8013800 9370200 0 0 0 0 0 0 17384000 8013800 9370200 0 0 0 0 0 0 0 0 0 24584 3789 25788 130463 131256 131256 1 MLQTQNAAFQPNQYQMLAGPGGYPPR FDRGVGAEPLLPWNRMLQTQNAAFQPNQYQ NQYQMLAGPGGYPPRRDDRGGRQGYPREGR R M L P R R 3 1 2 0 0 5 0 3 0 0 2 0 2 1 4 0 1 0 2 0 0 0 26 0 2877.3691 Q9H0D6 Q9H0D6 896 921 XRN2 5-3 exoribonuclease 2 yes yes 3 2.5813E-05 33.187 By MS/MS 1 0.43836 0.46835 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43836 0.46835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2172100 1371000 801160 0 0 0 0 0 0 2172100 1371000 801160 0 0 0 0 0 0 0 0 0 24585 3924 25789 130464 131257;131258 131257 2 MLQVASQASR KLTFTAGGAIEFGQRMLQVASQASRGEVPS EFGQRMLQVASQASRGEVPSGAYGYSYMPS R M L S R G 2 1 0 0 0 2 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1089.5601 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9;K7EIN1;K7ESN4;K7EIK1 K7EIJ0 104 113 WBP2 WW domain-binding protein 2 yes no 2 3.9021E-05 140.11 By MS/MS By MS/MS By matching By MS/MS 2 4 2 1 1.4388 1.2763 14.957 9 Median 1.1608 1.1191 10.142 2 0 Median 1.4525 1.2327 6.9281 4 0 Median 1.5734 1.6113 6.4628 2 0 Median 1.4388 1.2763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79421000 33128000 46293000 13070000 6206400 6863200 60835000 24816000 36019000 4484400 1751900 2732400 1032500 354260 678240 0 0 0 0 0 0 24586 512 25790 130465;130466;130467;130468;130469;130470;130471;130472;130473 131259;131260;131261;131262;131263;131264;131265;131266;131267;131268;131269;131270 131266 12 MLRDQSAVVVQGLPEGVAFK KALGKSTVVPVPYEKMLRDQSAVVVQGLPE SAVVVQGLPEGVAFKHPENYDLATLKWILE K M L F K H 2 1 0 1 0 2 1 2 0 0 2 1 1 1 1 1 0 0 0 4 0 0 20 1 2143.146 P78347;A0A494C1K3 P78347 141 160 GTF2I General transcription factor II-I yes no 3 0.019003 17.148 By MS/MS 1 0.53531 0.60876 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53531 0.60876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2538800 1251100 1287700 0 0 0 0 0 0 2538800 1251100 1287700 0 0 0 0 0 0 0 0 0 24587 2642 25791 130474 131271 131271 1 MLRQIIGQAK ______________________________ ______________________________ - M L A K K 1 1 0 0 0 2 0 1 0 2 1 1 1 0 0 0 0 0 0 0 0 0 10 1 1156.675 O00483 O00483 1 10 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 2 0.0034296 71.877 By MS/MS 1 0.59747 0.5275 NaN 1 Median NaN NaN NaN 0 0 Median 0.59747 0.5275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2438000 1829400 608640 0 0 0 2438000 1829400 608640 0 0 0 0 0 0 0 0 0 0 0 0 24588 1467 25792 130475 131272 131272 1 MLSAGVTEAVLK SALRNLAIPVINKAKMLSAGVTEAVLKFLK KAKMLSAGVTEAVLKFLKSEMPPVQFKLLG K M L L K F 2 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 2 0 0 12 0 1217.669 P52306;H0Y8M2 P52306 398 409 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes no 2 0.0026723 48.091 By MS/MS By matching By matching 1 2 1 1.1624 1.0606 21.769 4 Median 1.0941 1.041 NaN 1 0 Median 1.0002 0.90927 24.42 2 0 Median 1.267 1.292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9509700 4111500 5398200 6938400 2993200 3945300 1172000 481580 690410 1399300 636730 762560 0 0 0 0 0 0 0 0 0 24589 2451 25793 130476;130477;130478;130479 131273;131274 131274 2 MLSALLTGVNR CFFRTCVKKKDVESKMLSALLTGVNRAYPY VESKMLSALLTGVNRAYPYSQTGDDKVREQ K M L N R A 1 1 1 0 0 0 0 1 0 0 3 0 1 0 0 1 1 0 0 1 0 0 11 0 1173.654 Q03701 Q03701 482 492 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 6.3905E-05 152.34 By MS/MS By matching By MS/MS 4 2 3 1.2163 1.3162 9.9723 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1644 1.263 7.7576 4 1 Median 1.672 1.4071 8.017 2 0 Median 1.1961 1.2479 11.241 3 2 Median NaN NaN NaN 0 0 Median 43671000 19866000 23805000 0 0 0 0 0 0 21964000 10108000 11856000 526770 202870 323900 21179000 9554900 11625000 0 0 0 24590 2710 25794;25795 130480;130481;130482;130483;130484;130485;130486;130487;130488 131275;131276;131277;131278;131279;131280;131281 131276 1399 7 MLSAVSQQVQCIQEALR GAWGCFDEFNRLEERMLSAVSQQVQCIQEA SAVSQQVQCIQEALREHSNPNYDKTSAPIT R M L L R E 2 1 0 0 1 4 1 0 0 1 2 0 1 0 0 2 0 0 0 2 0 0 17 0 1959.987 Q14204;A0A2R8YFZ7 Q14204 1967 1983 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 7.2125E-14 117 By MS/MS 2 1.2258 1.0046 1.5875 2 Median NaN NaN NaN 0 0 Median 1.2258 1.0046 1.5875 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20002000 8887700 11114000 0 0 0 20002000 8887700 11114000 0 0 0 0 0 0 0 0 0 0 0 0 24591 2865 25796 130489;130490 131282;131283;131284;131285 131284 4 MLSCAGADR IRVRLHPFHVIRINKMLSCAGADRLQTGMR VIRINKMLSCAGADRLQTGMRGAFGKPQGT K M L D R L 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 9 0 979.42154 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5;Q96L21;B8A6G2;A6QRI9 F8W7C6 51 59 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2 0.0071178 52.482 By matching By MS/MS 1 1 1.1748 1.0505 3.7151 2 Median 1.1513 1.0784 NaN 1 0 Median 1.1988 1.0232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1368800 643780 725000 572700 276040 296660 796080 367740 428340 0 0 0 0 0 0 0 0 0 0 0 0 24592 1084 25797 130491;130492 131286 131286 1 MLSELPALGISGIRPTYILR RGLHSQNFTQALLERMLSELPALGISGIRP PALGISGIRPTYILRWTVELIVANTKTGRN R M L L R W 1 2 0 0 0 0 1 2 0 3 4 0 1 0 2 2 1 0 1 0 0 0 20 1 2199.2449 Q9Y4W2 Q9Y4W2 402 421 LAS1L Ribosomal biogenesis protein LAS1L yes yes 3 0.066134 8.3901 By MS/MS By MS/MS By matching 2 2 1 0.98738 0.96847 19.453 5 Median NaN NaN NaN 0 0 Median 0.96356 0.91338 2.4654 2 0 Median 0.90971 1.033 9.1226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6249 1.4475 NaN 1 0 Median 8186600 4032200 4154300 0 0 0 6791200 3296700 3494500 1143900 643770 500150 0 0 0 0 0 0 251440 91737 159700 24593 4448 25798 130493;130494;130495;130496;130497 131287;131288 131287 2 MLSFQGLAELAHR SSVGNVADSTEPTKRMLSFQGLAELAHREY KRMLSFQGLAELAHREYQAGDFEAAERHCM R M L H R E 2 1 0 0 0 1 1 1 1 0 3 0 1 1 0 1 0 0 0 0 0 0 13 0 1471.7606 O15294;C9JZL3 O15294 18 30 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes no 3 0.0062422 29.328 By matching By matching By MS/MS By matching 1 1 2 1 1.1358 1.1404 29.229 5 Median 1.1358 1.1404 NaN 1 0 Median 1.043 0.90725 NaN 1 0 Median 1.361 1.4562 2.2215 2 0 Median 0.84307 0.75115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5163900 2533300 2630600 1254600 760750 493820 1237500 600820 636710 2579900 1137100 1442800 91820 34602 57218 0 0 0 0 0 0 24594 1537 25799 130498;130499;130500;130501;130502 131289;131290 131289 2 MLSHLLQALDYGAPPHGGIALGLDR LQRYILATLLKEDVKMLSHLLQALDYGAPP YGAPPHGGIALGLDRLICLVTGSPSIRDVI K M L D R L 3 1 0 2 0 1 0 4 2 1 6 0 1 0 2 1 0 0 1 0 0 0 25 0 2614.369 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3IS54 Q6PI48 563 587 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3;4 0.00066386 26.5 By MS/MS 2 1.1831 1.0245 7.6992 2 Median NaN NaN NaN 0 0 Median 1.1831 1.0245 7.6992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7857400 3540500 4316900 0 0 0 7857400 3540500 4316900 0 0 0 0 0 0 0 0 0 0 0 0 24595 3171 25800 130503;130504 131291;131292;131293;131294 131294 4 MLSNKPQDFQIR AQLARRLTKVKNSRRMLSNKPQDFQIRVRV SRRMLSNKPQDFQIRVRVIEGRQLSGNNIR R M L I R V 0 1 1 1 0 2 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 12 1 1475.7555 Q9NZM1 Q9NZM1 191 202 MYOF Myoferlin yes yes 3 0.03516 20.857 By MS/MS 1 0.32133 0.30698 NaN 1 Median NaN NaN NaN 0 0 Median 0.32133 0.30698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1634800 1304000 330790 0 0 0 1634800 1304000 330790 0 0 0 0 0 0 0 0 0 0 0 0 24596 4192 25801 130505 131295 131295 1 MLSSAYISDHMK TVRHEEKVPCHVCGKMLSSAYISDHMKVHS CGKMLSSAYISDHMKVHSQGPHHVCELCNK K M L M K V 1 0 0 1 0 0 0 0 1 1 1 1 2 0 0 3 0 0 1 0 0 0 12 0 1381.637 I3L2Z5;A0A087WWR2;P56270;H3BQI4;I3L411;H3BPU3;H3BQS2;I3L4Y2;I3L0M3 I3L2Z5 150 161 MAZ Myc-associated zinc finger protein no no 2;3 0.00014004 88.681 By matching By MS/MS By MS/MS By matching By matching 1 7 7 1 1 0.98666 0.93824 26.084 16 Median 1.0354 1.002 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93618 0.90112 26.099 7 1 Median 1.3087 1.104 27.282 6 1 Median 0.80695 0.8251 NaN 1 0 Median 0.80982 0.6749 NaN 1 0 Median 78969000 41201000 37769000 3560400 1354000 2206500 0 0 0 52728000 28485000 24243000 20573000 10225000 10348000 1722900 922390 800510 385270 214600 170670 24597 61;1270 25802;25803 130506;130507;130508;130509;130510;130511;130512;130513;130514;130515;130516;130517;130518;130519;130520;130521;130522 131296;131297;131298;131299;131300;131301;131302;131303;131304;131305;131306;131307;131308 131303 23 13 MLSSSDAITQEFMDLR AFVESQQKSPGKRRRMLSSSDAITQEFMDL LSSSDAITQEFMDLRTRYTALVTLTTQHVK R M L L R T 1 1 0 2 0 1 1 0 0 1 2 0 2 1 0 3 1 0 0 0 0 0 16 0 1842.8492 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1369 1384 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 1.7794E-07 86.313 By MS/MS 2 0.90995 0.90942 1.9738 2 Median 0.90995 0.90942 1.9738 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11241000 5613000 5628100 11241000 5613000 5628100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24598 1220 25804 130523;130524 131309;131310 131310 2 MLTAQDMSYDEAR FLQDCQELSLWINEKMLTAQDMSYDEARNL EKMLTAQDMSYDEARNLHSKWLKHQAFMAE K M L A R N 2 1 0 2 0 1 1 0 0 0 1 0 2 0 0 1 1 0 1 0 0 0 13 0 1529.649 Q01082;A0A087WUZ3 Q01082 1295 1307 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 1.6823E-30 206.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 5 2 1 1.0154 0.96574 18.575 18 Median 1.3223 1.2817 7.1785 2 0 Median 1.3552 1.1575 16.687 3 0 Median 0.84575 0.92186 6.1523 5 0 Median 0.9613 0.84618 15.97 5 0 Median 1.0147 1.0504 9.8943 2 0 Median 1.1685 0.97435 NaN 1 0 Median 288780000 142480000 146300000 35775000 16622000 19154000 39870000 17237000 22633000 162350000 83748000 78606000 23446000 11669000 11777000 25845000 12497000 13348000 1486700 708540 778170 24599 2681 25805;25806;25807 130525;130526;130527;130528;130529;130530;130531;130532;130533;130534;130535;130536;130537;130538;130539;130540;130541;130542 131311;131312;131313;131314;131315;131316;131317;131318;131319;131320;131321;131322;131323;131324;131325;131326;131327;131328;131329;131330;131331;131332;131333;131334;131335;131336;131337;131338 131333 1374;1375 27 MLTAQDVSYDEAR FLQDCHELKLWIDEKMLTAQDVSYDEARNL EKMLTAQDVSYDEARNLHTKWQKHQAFMAE K M L A R N 2 1 0 2 0 1 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 13 0 1497.677 O15020 O15020 1298 1310 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 9.3538E-31 207.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 3 1 1 1.3217 1.1739 18.831 9 Median 1.2471 1.1739 NaN 1 1 Median 1.4294 1.2055 10.917 2 1 Median 0.81809 0.89442 16.494 2 0 Median 1.2322 1.0841 13.006 2 1 Median 1.3259 1.3927 NaN 1 0 Median 1.7277 1.4495 NaN 1 0 Median 53058000 25447000 27611000 8431700 3397900 5033900 6661400 2388100 4273300 30692000 16811000 13881000 3552700 1293800 2258900 2940500 1274400 1666100 779890 281430 498460 24600 1512 25808;25809 130543;130544;130545;130546;130547;130548;130549;130550;130551;130552 131339;131340;131341;131342;131343;131344;131345;131346 131341 486 8 MLTATAMPTVATSVQSPYR LGGPTLTHAVTRATKMLTATAMPTVATSVQ TAMPTVATSVQSPYRSTKLVIIERLLLLAE K M L Y R S 3 1 0 0 0 1 0 0 0 0 1 0 2 0 2 2 4 0 1 2 0 0 19 0 2024.0071 Q9UPU5 Q9UPU5 899 917 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 0.056111 29.689 By MS/MS 1 0.8939 0.86448 NaN 1 Median 0.8939 0.86448 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968600 1878700 2089900 3968600 1878700 2089900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24601 4357 25810 130553 131347 131347 1 MLTGPVYSQSTALTHK VVTGTNNLGYMDLLRMLTGPVYSQSTALTH LTGPVYSQSTALTHKQSYYSIAKCVAALTR R M L H K Q 1 0 0 0 0 1 0 1 1 0 2 1 1 0 1 2 3 0 1 1 0 0 16 0 1732.8818 Q86VP6;A0A0C4DGH5 Q86VP6 778 793 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 5.2453E-92 225.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 6 4 1 2 1.0339 0.96056 47.653 17 Median 0.97373 0.93871 3.411 3 0 Median 1.1237 0.96378 0.47343 2 0 Median 0.92827 0.98481 75.484 6 4 Median 1.0555 0.93408 19.835 3 0 Median 1.8261 1.8661 NaN 1 1 Median 1.0793 0.88905 5.6733 2 0 Median 453080000 234770000 218310000 114960000 57524000 57441000 25637000 11053000 14585000 264680000 146240000 118440000 30499000 12663000 17836000 11117000 4563000 6554300 6183900 2731200 3452800 24602 3288 25811;25812 130554;130555;130556;130557;130558;130559;130560;130561;130562;130563;130564;130565;130566;130567;130568;130569;130570;130571 131348;131349;131350;131351;131352;131353;131354;131355;131356;131357;131358;131359;131360;131361;131362;131363;131364;131365;131366;131367;131368 131362 1705 21 MLTNAMEVTGLDGNYR TREKFPEKIPFRLTRMLTNAMEVTGLDGNY LTNAMEVTGLDGNYRITCHTVMEVLREHKD R M L Y R I 1 1 2 1 0 0 1 2 0 0 2 0 2 0 0 0 2 0 1 1 0 0 16 0 1783.8233 P42345;B1AKP8;B1AKQ2 P42345 2382 2397 MTOR Serine/threonine-protein kinase mTOR yes no 2 0.0006274 57.836 By MS/MS 1 1.4057 1.3442 NaN 1 Median 1.4057 1.3442 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4909000 2156300 2752700 4909000 2156300 2752700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24603 2310 25813 130572 131369 131369 1 MLVDDIGDVTITNDGATILK ANIVKSSLGPVGLDKMLVDDIGDVTITNDG IGDVTITNDGATILKLLEVEHPAAKVLCEL K M L L K L 1 0 1 4 0 0 0 2 0 3 2 1 1 0 0 0 3 0 0 2 0 0 20 0 2103.0769 P17987;E7ERF2;F5H136;F5GZI8;F5H676;F5H726 P17987 44 63 TCP1 T-complex protein 1 subunit alpha yes no 2;3 8.3398E-11 96.591 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.1351 1.0223 66.683 8 Median 0.93367 0.92688 79.04 3 0 Median 1.1414 0.97656 61.573 3 0 Median 1.1288 1.104 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5816 1.5301 NaN 1 0 Median NaN NaN NaN 0 0 Median 49813000 23154000 26659000 20095000 9659800 10435000 19772000 9175700 10596000 9467100 4136400 5330600 0 0 0 479240 181970 297270 0 0 0 24604 2051 25814 130573;130574;130575;130576;130577;130578;130579;130580 131370;131371;131372;131373;131374;131375;131376;131377;131378;131379;131380 131374 11 MLVDLAK LVDYSKNLVTEDVMRMLVDLAKSRGVEAAR LVTEDVMRMLVDLAKSRGVEAARERMFNGE R M L A K S 1 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 7 0 788.44661 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ENA0;K7ELR7;A0A2R8YF08;A0A0J9YXM3;K7ERK8;K7EIL4;A0A0J9YXH9 P06744 67 73 GPI Glucose-6-phosphate isomerase yes no 2 0.03673 58.167 By MS/MS 1 1.015 0.86854 NaN 1 Median NaN NaN NaN 0 0 Median 1.015 0.86854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2716900 1106700 1610300 0 0 0 2716900 1106700 1610300 0 0 0 0 0 0 0 0 0 0 0 0 24605 1875 25815 130581 131381 131381 641 1 MLVDVFAPEFR SDHTRNSAEGTEYFKMLVDVFAPEFRRPKN EYFKMLVDVFAPEFRRPKNIHLRNFYIIVP K M L F R R 1 1 0 1 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 2 0 0 11 0 1322.6693 A0A087X256;Q2M389;F8W1W1 A0A087X256 994 1004 KIAA1033 WASH complex subunit 7 yes no 2 0.00018232 77.677 By MS/MS By matching By MS/MS 1 1 1 0.90441 0.8969 8.5951 3 Median 0.90441 0.8969 NaN 1 0 Median 1.1089 0.97273 NaN 1 0 Median 0.76501 0.81917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2846100 1464100 1382000 1867400 939710 927710 356110 200470 155640 622580 323890 298680 0 0 0 0 0 0 0 0 0 24606 129 25816 130582;130583;130584 131382;131383;131384;131385 131383 4 MLVEATR YVKEEIQENEEAVKKMLVEATREFEEVVVD ENEEAVKKMLVEATREFEEVVVDESPPDFE K M L T R E 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 7 0 818.43202 Q9NYB0;A0A590UJT3 Q9NYB0 253 259 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 2 0.031276 49.358 By MS/MS 1 0.63586 0.67098 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63586 0.67098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1238000 846480 391520 0 0 0 0 0 0 1238000 846480 391520 0 0 0 0 0 0 0 0 0 24607 4174 25817 130585 131386 131386 1 MLVELSK ATILKQMQVLHPAARMLVELSKAQDIEAGD QVLHPAARMLVELSKAQDIEAGDGTTSVVI R M L S K A 0 0 0 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 7 0 818.45718 P50991 P50991 90 96 CCT4 T-complex protein 1 subunit delta yes yes 2 0.010865 81.297 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 1.0531 0.90378 24.384 9 Median 1.0491 0.97262 16.339 2 0 Median 1.0125 0.86013 27.03 4 0 Median 1.2623 1.2424 NaN 1 0 Median 0.92293 0.78648 19.661 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152520000 66968000 85548000 55157000 24552000 30605000 85929000 37580000 48349000 8107300 3351300 4756100 3322600 1484700 1837800 0 0 0 0 0 0 24608 2424 25818 130586;130587;130588;130589;130590;130591;130592;130593;130594 131387;131388;131389;131390;131391;131392;131393;131394;131395 131387 9 MLVETAQER VYDLVAVLCPKGPLRMLVETAQERNEPIFP PKGPLRMLVETAQERNEPIFPALIYSSAMV R M L E R N 1 1 0 0 0 1 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1075.5332 E5RFW4;E5RG63;E7ES96;B1AP22;P49810;P49768 E5RFW4 103 111 PSEN2;PSEN1 Presenilin;Presenilin-2;Presenilin-2 NTF subunit;Presenilin-2 CTF subunit;Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12 yes no 2 0.00070224 103.56 By MS/MS By matching 2 1 1.1886 0.98316 53.161 3 Median NaN NaN NaN 0 0 Median 1.528 1.2709 36.303 2 0 Median NaN NaN NaN 0 0 Median 0.664 0.56745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9574000 3889600 5684400 0 0 0 8937800 3538700 5399100 0 0 0 636190 350860 285330 0 0 0 0 0 0 24609 577 25819 130595;130596;130597 131396 131396 1 MLVEYTQNQK GRLAAELEDRRQLARMLVEYTQNQKDVLSE RQLARMLVEYTQNQKDVLSEKEKKLEEYKQ R M L Q K D 0 0 1 0 0 2 1 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 10 0 1252.6122 Q9NQG5;A2A2M0;A0A087X2D2;A0A087WUK3 Q9NQG5 257 266 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes no 2 9.7509E-08 139.19 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 1 1.0472 0.94292 53.552 10 Median 1.7789 1.7065 NaN 1 0 Median 0.56118 0.52566 91.191 2 1 Median 0.84039 0.81086 12.786 2 1 Median 1.6146 1.3636 19.523 2 0 Median 0.81083 0.80604 3.6403 2 1 Median 1.965 1.6198 NaN 1 0 Median 74478000 37549000 36929000 1724000 712570 1011400 13659000 7759500 5899500 34066000 17575000 16491000 8895900 3610200 5285700 15740000 7711200 8028500 393270 180410 212860 24610 4062 25820;25821 130598;130599;130600;130601;130602;130603;130604;130605;130606;130607 131397;131398;131399;131400;131401;131402 131398 1869 6 MLVIEQCK AGLVQEISFGTTKDKMLVIEQCKNSRAVTI FGTTKDKMLVIEQCKNSRAVTIFIRGGNKM K M L C K N 0 0 0 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 1019.5144 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 371 378 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.027344 41.227 By MS/MS 1 1.3599 1.1383 NaN 1 Median NaN NaN NaN 0 0 Median 1.3599 1.1383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12839000 5608300 7230400 0 0 0 12839000 5608300 7230400 0 0 0 0 0 0 0 0 0 0 0 0 24611 2364 25822 130608 131403 131403 1 MLVLDEADEMLNK FDMIRRRSLRTRAIKMLVLDEADEMLNKGF IKMLVLDEADEMLNKGFKEQIYDVYRYLPP K M L N K G 1 0 1 2 0 0 2 0 0 0 3 1 2 0 0 0 0 0 0 1 0 0 13 0 1519.7262 P38919;I3L3H2 P38919 183 195 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 1.31E-06 141.95 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 8 8 3 6 1.1599 1.0331 16.707 31 Median 1.2091 1.1394 5.6411 2 0 Median 1.4046 1.1945 10.095 5 0 Median 0.89369 0.87673 11.202 8 2 Median 1.1669 1.0416 15.488 7 1 Median 0.97822 1.1547 9.7019 3 0 Plateau 1.2412 1.0217 18.475 6 0 Median 181240000 83302000 97934000 5904000 2753300 3150700 25596000 10504000 15093000 83071000 41297000 41774000 36374000 15225000 21149000 19415000 8785600 10630000 10876000 4737900 6138400 24612 2278 25823;25824;25825 130609;130610;130611;130612;130613;130614;130615;130616;130617;130618;130619;130620;130621;130622;130623;130624;130625;130626;130627;130628;130629;130630;130631;130632;130633;130634;130635;130636;130637;130638;130639;130640 131404;131405;131406;131407;131408;131409;131410;131411;131412;131413;131414;131415;131416;131417;131418;131419;131420;131421;131422;131423 131412 1034;1035 20 MLVLDSDKR VFIGANPLAVDLLEKMLVLDSDKRITAAQA VDLLEKMLVLDSDKRITAAQALAHAYFAQY K M L K R I 0 1 0 2 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 9 1 1075.5696 Q16539;B4E0K5 Q16539 288 296 MAPK14 Mitogen-activated protein kinase 14 yes no 2 0.011053 74.127 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24613 2987 25826 130641 131424 131424 1 MLVQCMQDQEHPSIR IFGNQQQHYLDVIKRMLVQCMQDQEHPSIR MLVQCMQDQEHPSIRTLSARATAAFILANE R M L I R T 0 1 0 1 1 3 1 0 1 1 1 0 2 0 1 1 0 0 0 1 0 0 15 0 1870.8488 O00410;H0Y8C6;H0Y3V4 O00410 176 190 IPO5 Importin-5 yes no 3 0.028008 17.506 By MS/MS 2 0.908 0.80658 29.763 2 Median NaN NaN NaN 0 0 Median 0.908 0.80658 29.763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7362400 4397300 2965100 0 0 0 7362400 4397300 2965100 0 0 0 0 0 0 0 0 0 0 0 0 24614 1460 25827 130642;130643 131425;131426 131425 2 MLVSEIEMK PENSKTLATQLNQQKMLVSEIEMKQSKMDE QLNQQKMLVSEIEMKQSKMDECQKYAEQYS K M L M K Q 0 0 0 0 0 0 2 0 0 1 1 1 2 0 0 1 0 0 0 1 0 0 9 0 1078.5403 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6;H0YAT7 E9PHM6 1336 1344 DST Dystonin yes no 2 0.0048546 79.906 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24615 934 25828 130644 131427 131427 1 MLVSGAGDIK QDVLRTNLGPKGTMKMLVSGAGDIKLTKDG KGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ K M L I K L 1 0 0 1 0 0 0 2 0 1 1 1 1 0 0 1 0 0 0 1 0 0 10 0 989.52157 P40227;Q92526 P40227 46 55 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 no no 2 0.00033784 95.502 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 1 1.1984 1.076 14.056 14 Median 1.2216 1.1288 15.971 6 1 Median 1.1921 0.99772 11.386 5 1 Median 1.1393 1.1292 2.3314 2 0 Median 1.2731 1.092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206200000 92429000 113770000 104590000 47550000 57039000 83469000 36589000 46880000 12152000 5763400 6388300 5988300 2526700 3461600 0 0 0 0 0 0 24616 2285;3532 25829;25830 130645;130646;130647;130648;130649;130650;130651;130652;130653;130654;130655;130656;130657;130658 131428;131429;131430;131431;131432;131433;131434;131435;131436;131437;131438;131439;131440 131439 1042 13 MLVSGQGPVMENAQGLGFR SHSPMKLFSEYHEKRMLVSGQGPVMENAQG GQGPVMENAQGLGFRNVVTVDELRMAFPLL R M L F R N 1 1 1 0 0 2 1 4 0 0 2 0 2 1 1 1 0 0 0 2 0 0 19 0 1989.9765 Q9BXW7 Q9BXW7 134 152 CECR5 Cat eye syndrome critical region protein 5 yes yes 2;3 3.765E-13 104.87 By MS/MS By MS/MS 2 1 0.78569 0.78168 9.1155 3 Median 0.76019 0.75531 4.853 2 0 Median NaN NaN NaN 0 0 Median 0.80417 0.87428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16073000 8857800 7215300 14011000 7637500 6373000 0 0 0 2062500 1220200 842290 0 0 0 0 0 0 0 0 0 24617 3882 25831 130659;130660;130661 131441;131442;131443;131444;131445 131442 5 MLVTFDEELRPLPVSVR SHYVLYGLVAAMQPRMLVTFDEELRPLPVS VTFDEELRPLPVSVRVGQAVDVVGQAGKPK R M L V R V 0 2 0 1 0 0 2 0 0 0 3 0 1 1 2 1 1 0 0 3 0 0 17 1 2000.0765 Q13200 Q13200 829 845 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 1.8524E-12 128.9 By MS/MS By MS/MS 2 2 0.82497 0.86493 4.2997 4 Median 0.75857 0.84278 5.6593 2 0 Median 0.88243 0.87306 3.3134 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53471000 27633000 25838000 3801600 1956000 1845600 49670000 25677000 23993000 0 0 0 0 0 0 0 0 0 0 0 0 24618 2796 25832;25833 130662;130663;130664;130665 131446;131447;131448;131449;131450;131451;131452 131451 1498 7 MLVVAEQPLHAMR PQNVYEYVRKYAEHRMLVVAEQPLHAMRKG HRMLVVAEQPLHAMRKGLLDVLPKNSLEDL R M L M R K 2 1 0 0 0 1 1 0 1 0 2 0 2 0 1 0 0 0 0 2 0 0 13 0 1493.7847 O95071;E7EMW7;E7ET84 O95071 2643 2655 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2;3 5.288E-11 133.13 By MS/MS 2 0.74758 0.73347 5.3941 2 Median 0.74758 0.73347 5.3941 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21293000 12254000 9038900 21293000 12254000 9038900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24619 1744 25834 130666;130667 131453;131454 131454 2 MLVVGGIDR DMNLYMRIAPELYHKMLVVGGIDRVYEIGR PELYHKMLVVGGIDRVYEIGRQFRNEGIDL K M L D R V 0 1 0 1 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 2 0 0 9 0 958.52699 Q15046 Q15046 306 314 KARS Lysine--tRNA ligase yes yes 2 0.0005606 114.28 By MS/MS By MS/MS By MS/MS 2 1 1 1.2404 1.1302 4.8494 4 Median 1.1961 1.1302 5.2 2 1 Median 1.238 1.0696 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4051 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60493000 26863000 33630000 34814000 15540000 19274000 23783000 10450000 13333000 0 0 0 1895900 873450 1022400 0 0 0 0 0 0 24620 2919 25835 130668;130669;130670;130671 131455;131456;131457;131458;131459;131460;131461 131457 7 MLVVLLQANR LEDDVVGDTSGYYQRMLVVLLQANRDPDAG GYYQRMLVVLLQANRDPDAGIDEAQVEQDA R M L N R D 1 1 1 0 0 1 0 0 0 0 3 0 1 0 0 0 0 0 0 2 0 0 10 0 1155.6798 P08758;D6RBL5;D6RBE9 P08758 152 161 ANXA5 Annexin A5;Annexin yes no 2 0.00040547 77.058 By MS/MS By MS/MS By matching 1 1 1 1.2604 1.1295 20.509 3 Median 1.2014 1.1295 NaN 1 0 Median 1.2604 1.0583 NaN 1 0 Median 1.6192 1.5526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9733500 4238200 5495300 5934000 2615200 3318700 2440800 1108900 1331900 1358700 514050 844670 0 0 0 0 0 0 0 0 0 24621 1909 25836 130672;130673;130674 131462;131463 131462 2 MLVVLLQGTR LEADIIGDTSGHFQKMLVVLLQGTREEDDV GHFQKMLVVLLQGTREEDDVVSEDLVQQDV K M L T R E 0 1 0 0 0 1 0 1 0 0 3 0 1 0 0 0 1 0 0 2 0 0 10 0 1128.6689 P08133;E5RK63 P08133 157 166 ANXA6 Annexin A6;Annexin yes no 2 0.0023475 60.59 By MS/MS By MS/MS By matching 1 2 1 1.3254 1.218 19.407 4 Median 1.118 1.0909 NaN 1 0 Median 1.6576 1.4593 9.9831 2 0 Median 0.98554 1.0322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13782000 5217700 8564700 4557000 1755000 2802000 8039600 2972400 5067200 1185700 490310 695410 0 0 0 0 0 0 0 0 0 24622 1898 25837 130675;130676;130677;130678 131464;131465;131466 131464 3 MLWGSDPYPHAEPQQATTPK ARSARDHAISLSEPRMLWGSDPYPHAEPQQ DPYPHAEPQQATTPKATEEPEDVRSEAALD R M L P K A 2 0 0 1 0 2 1 1 1 0 1 1 1 0 4 1 2 1 1 0 0 0 20 0 2253.0525 E7EPN9;Q9Y520 E7EPN9 807 826 PRRC2C Protein PRRC2C yes no 3 0.02756 21.569 By MS/MS 1 0.5588 0.55957 NaN 1 Median 0.5588 0.55957 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10587000 6945600 3640900 10587000 6945600 3640900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24623 872 25838 130679 131467 131467 1 MLYAATR IFIAWSPDHSHVRQKMLYAATRATLKKEFG DHSHVRQKMLYAATRATLKKEFGGGHIKDE K M L T R A 2 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 7 0 824.42146 Q12792;F8VS81;F8W645;F8W1Q9;Q6IBS0;D6RG15 Q12792 99 105 TWF1;TWF2 Twinfilin-1;Twinfilin-2 no no 2 0.053242 38.792 By matching By MS/MS By matching 1 2 1 1.2488 1.0656 3.0774 4 Median 1.0036 1.027 NaN 1 0 Median 1.2756 1.0911 0.91417 2 0 Median NaN NaN NaN 0 0 Median 1.2261 1.0474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5573300 2467900 3105400 1002500 534650 467830 4150400 1768900 2381500 0 0 0 420390 164310 256080 0 0 0 0 0 0 24624 2759;3138 25839 130680;130681;130682;130683 131468 131468 1 MMADEALGSGLVSR GNQSLVNELAFTARKMMADEALGSGLVSRV KMMADEALGSGLVSRVFPDKEVMLDAALAL K M M S R V 2 1 0 1 0 0 1 2 0 0 2 0 2 0 0 2 0 0 0 1 0 0 14 0 1435.6799 Q13011 Q13011 232 245 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 2 4.5946E-07 124.42 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.99203 0.97133 21.965 5 Median 1.103 1.0426 16.527 2 0 Median 1.441 1.2182 NaN 1 0 Median 0.79895 0.8262 22.887 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45691000 24325000 21366000 32949000 17035000 15914000 1568600 482440 1086200 11173000 6807700 4365800 0 0 0 0 0 0 0 0 0 24625 2778 25840;25841 130684;130685;130686;130687;130688;130689 131469;131470;131471;131472;131473 131470 1495;1496 5 MMAIAPNVTVMVGELVGAR ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL APNVTVMVGELVGARLIAHAGSLLNLAKHA R M M A R L 3 1 1 0 0 0 1 2 0 1 1 0 3 0 1 0 1 0 0 4 0 0 19 0 1958.0151 Q9Y2X3;H7BZ72 Q9Y2X3 279 297 NOP58 Nucleolar protein 58 yes no 2 1.1371E-07 72.958 By matching By MS/MS By MS/MS By matching 1 3 2 1 0.9879 0.9764 15.22 7 Median 0.9879 0.9764 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89629 0.94579 4.5066 3 1 Median NaN NaN NaN 0 0 Median 1.1305 1.1685 28.717 2 0 Median 1.1881 1.0506 NaN 1 0 Median 6331300 3187100 3144300 538460 268100 270360 0 0 0 4767000 2402200 2364700 0 0 0 893510 460310 433210 132390 56433 75958 24626 4396 25842;25843 130690;130691;130692;130693;130694;130695;130696 131474;131475;131476;131477;131478 131475 1961;1962 5 MMANGILK GISEETTTGVHNLYKMMANGILKVPAINVN GVHNLYKMMANGILKVPAINVNDSVTKSKF K M M L K V 1 0 1 0 0 0 0 1 0 1 1 1 2 0 0 0 0 0 0 0 0 0 8 0 876.45613 P23526 P23526 167 174 AHCY Adenosylhomocysteinase yes yes 2 0.018429 47.916 By MS/MS By MS/MS 2 2 1.5066 1.3187 16.369 4 Linear 1.1272 1.0489 20.648 2 0 Median 1.2625 1.0733 19.293 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51628000 22326000 29302000 18255000 8853800 9400800 33373000 13472000 19901000 0 0 0 0 0 0 0 0 0 0 0 0 24627 2116 25844 130697;130698;130699;130700 131479;131480;131481;131482;131483 131479 5 MMCGAPSATQPATAETQHIADQVR ______________________________ QPATAETQHIADQVRSQLEEKENKKFPVFK - M M V R S 5 1 0 1 1 3 1 1 1 1 0 0 2 0 2 1 3 0 0 1 0 0 24 0 2570.1676 P04080;A0A1W2PS52 P04080 1 24 CSTB Cystatin-B yes no 3 5.6976E-08 42.325 By MS/MS 1 0.74638 0.75624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74638 0.75624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3647400 2179900 1467500 0 0 0 0 0 0 3647400 2179900 1467500 0 0 0 0 0 0 0 0 0 24628 1843 25845 130701 131484 131484 601;602 1 MMDYLQGSGETPQTDVR VDISSNTAGKTLFGKMMDYLQGSGETPQTD DYLQGSGETPQTDVRWMSETGIIDVFLLLG K M M V R W 0 1 0 2 0 2 1 2 0 0 1 0 2 0 1 1 2 0 1 1 0 0 17 0 1926.8452 E9PKU7;Q14697;F5H6X6 Q14697 338 354 GANAB Neutral alpha-glucosidase AB no no 2;3 2.8807E-31 194.24 By MS/MS By MS/MS By MS/MS By matching By matching 7 5 1 1 1 0.89539 0.86181 14.901 15 Median 0.85953 0.83575 6.0313 7 0 Median 1.1019 0.92334 16.309 5 0 Median 0.82213 0.87322 NaN 1 0 Median 1.0591 0.90473 NaN 1 0 Median 1.1461 1.2138 NaN 1 0 Median NaN NaN NaN 0 0 Median 250360000 129110000 121250000 222390000 115770000 106610000 14555000 6665600 7889300 9817700 4809700 5008000 839700 349400 490300 2761600 1512100 1249500 0 0 0 24629 2896;951 25846;25847;25848 130702;130703;130704;130705;130706;130707;130708;130709;130710;130711;130712;130713;130714;130715;130716 131485;131486;131487;131488;131489;131490;131491;131492;131493;131494;131495;131496;131497;131498 131488 333;334 14 MMEEFVPHSK RLGQMIVDYENPLKKMMEEFVPHSKSLSDA NPLKKMMEEFVPHSKSLSDALISLQMVYPR K M M S K S 0 0 0 0 0 0 2 0 1 0 0 1 2 1 1 1 0 0 0 1 0 0 10 0 1233.5522 Q9Y2A7 Q9Y2A7 192 201 NCKAP1 Nck-associated protein 1 yes yes 3 0.059441 13.809 By matching By matching By MS/MS By matching 1 1 1 1 1.0187 0.915 14.736 4 Median NaN NaN NaN 0 0 Median 1.0533 0.92633 NaN 1 0 Median 1.1197 1.1668 NaN 1 0 Median 0.98519 0.82533 NaN 1 0 Median 0.84532 0.90382 NaN 1 0 Median NaN NaN NaN 0 0 Median 3376800 1848000 1528800 0 0 0 621320 318070 303250 1363300 701960 661390 1043600 635690 407930 348460 192260 156210 0 0 0 24630 4383 25849 130717;130718;130719;130720 131499 131499 1 MMEIMTR TSYAQHQQVRQIRKKMMEIMTREVQTNDLK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI K M M T R E 0 1 0 0 0 0 1 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 7 0 910.40747 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6 P61247 168 174 RPS3A 40S ribosomal protein S3a yes no 2 0.0047684 119.57 By MS/MS By MS/MS By matching By MS/MS By matching By matching 3 3 1 2 3 2 1.2149 1.1167 12.821 14 Median 1.1296 1.056 5.0249 3 0 Median 1.2776 1.0701 20.294 3 0 Median 1.0235 1.0128 NaN 1 0 Median 1.2383 1.0346 16.15 2 0 Median 1.2804 1.3108 10.075 3 0 Plateau 1.3925 1.1335 1.4378 2 0 Median 263640000 121340000 142300000 210470000 97785000 112680000 7260500 3265500 3995000 5820200 2833300 2986900 5359000 2441600 2917400 28320000 12237000 16083000 6412800 2773900 3639000 24631 2553 25850;25851 130721;130722;130723;130724;130725;130726;130727;130728;130729;130730;130731;130732;130733;130734 131500;131501;131502;131503;131504;131505;131506;131507;131508;131509 131503 1229;1230 10 MMENGIKPVYVFDGKPPQLK ETTSHLMGMFYRTIRMMENGIKPVYVFDGK IKPVYVFDGKPPQLKSGELAKRSERRAEAE R M M L K S 0 0 1 1 0 1 1 2 0 1 1 3 2 1 3 0 0 0 1 2 0 0 20 2 2290.1854 P39748;F5H1Y3 P39748 74 93 FEN1 Flap endonuclease 1 yes no 4 0.026746 14.31 By matching By MS/MS 1 1 0.55098 0.60426 3.3621 2 Median 0.57544 0.59006 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52755 0.61879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24680000 16727000 7952900 2418700 1595700 823010 0 0 0 22261000 15131000 7129900 0 0 0 0 0 0 0 0 0 24632 2283 25852 130735;130736 131510;131511 131510 2 MMGHRPVLVLSQNTK ______________________________ MMGHRPVLVLSQNTKRESGRKVQSGNINAA - M M T K R 0 1 1 0 0 1 0 1 1 0 2 1 2 0 1 1 1 0 0 2 0 0 15 1 1709.9069 P49368;E9PRC8;E9PM09;Q5SZX9 P49368 1 15 CCT3 T-complex protein 1 subunit gamma yes no 2;3 1.3788E-08 147.28 By MS/MS By MS/MS By MS/MS By matching By matching By matching 7 3 1 1 1 1 1.0652 1.0386 20.227 14 Median 1.0151 1.0151 5.7811 7 0 Median 1.1504 1.0472 8.9413 3 0 Plateau 1.6997 1.9001 NaN 1 0 Median 1.6692 1.5305 NaN 1 0 Median 1.1712 1.2167 NaN 1 0 Median 1.0964 0.986 NaN 1 0 Median 377790000 181180000 196610000 341330000 164000000 177330000 23882000 12152000 11730000 5067800 2045800 3022100 4647800 1738000 2909900 2316200 1064100 1252000 547000 184130 362870 24633 2379 25853;25854;25855 130737;130738;130739;130740;130741;130742;130743;130744;130745;130746;130747;130748;130749;130750 131512;131513;131514;131515;131516;131517;131518;131519;131520;131521;131522;131523 131522 1097;1098 12 MMGLEVLGEK IRTFVPKNERLHYLRMMGLEVLGEKKKEGV LHYLRMMGLEVLGEKKKEGVILTNESAAST R M M E K K 0 0 0 0 0 0 2 2 0 0 2 1 2 0 0 0 0 0 0 1 0 0 10 0 1105.5512 Q08J23 Q08J23 701 710 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.0037749 55.549 By MS/MS By matching 2 1 1.1593 1.0635 18.293 3 Median 1.0218 0.97001 13.009 2 0 Median NaN NaN NaN 0 0 Median 1.224 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12973000 5876700 7096400 11602000 5364700 6237300 0 0 0 1371100 512000 859150 0 0 0 0 0 0 0 0 0 24634 2745 25856 130751;130752;130753 131524;131525;131526;131527 131527 4 MMHSNMETLYK TSFVKDAQEQYNKLRMMHSNMETLYKELGE NKLRMMHSNMETLYKELGEYFLFDPKKLSV R M M Y K E 0 0 1 0 0 0 1 0 1 0 1 1 3 0 0 1 1 0 1 0 0 0 11 0 1383.5985 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 1106 1116 DIAPH1 Protein diaphanous homolog 1 yes no 2;3 5.234E-09 118.4 By MS/MS By MS/MS By matching 2 2 1 1.3581 1.1579 15.823 5 Median 1.1941 1.1552 18.105 2 0 Median 1.5498 1.3123 17.698 2 0 Median NaN NaN NaN 0 0 Median 1.1551 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39796000 15665000 24132000 18531000 7591000 10940000 20211000 7553500 12658000 0 0 0 1053600 520180 533400 0 0 0 0 0 0 24635 274 25857 130754;130755;130756;130757;130758 131528;131529;131530;131531;131532;131533 131530 5 MMIHGFQSSHR ______________________________ ______________________________ - M M H R D 0 1 0 0 0 1 0 1 2 1 0 0 2 1 0 2 0 0 0 0 0 0 11 0 1329.607 O75663 O75663 1 11 TIPRL TIP41-like protein yes yes 2;3 3.5046E-06 129.38 By MS/MS By matching 2 1 1.3415 1.1482 6.3434 3 Median 1.2624 1.1805 8.6803 2 1 Median 1.3737 1.1482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61742000 25915000 35827000 58230000 24464000 33767000 3511100 1451200 2059900 0 0 0 0 0 0 0 0 0 0 0 0 24636 1689 25858 130759;130760;130761 131534;131535;131536 131536 3 MMIPDCQR NYDIKKQAEILQESRMMIPDCQRRLEAAYL EILQESRMMIPDCQRRLEAAYLDLQRILEN R M M Q R R 0 1 0 1 1 1 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 8 0 1049.4456 E5RIW3;E5RJD8;O75347;E5RHG6 E5RIW3 38 45 TBCA Tubulin-specific chaperone A yes no 2 0.0024054 117.93 By matching By MS/MS 1 2 1.0903 0.95253 4.5733 3 Median 1.054 1.0162 NaN 1 0 Median 1.1063 0.94131 1.6755 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40203000 17909000 22294000 317120 145290 171830 39886000 17764000 22122000 0 0 0 0 0 0 0 0 0 0 0 0 24637 852 25859;25860 130762;130763;130764 131537;131538;131539;131540 131540 308;309 4 MMIPDCQRR NYDIKKQAEILQESRMMIPDCQRRLEAAYL ILQESRMMIPDCQRRLEAAYLDLQRILENE R M M R R L 0 2 0 1 1 1 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 9 1 1205.5468 E5RIW3;E5RJD8;O75347;E5RHG6 E5RIW3 38 46 TBCA Tubulin-specific chaperone A yes no 3 0.0026493 47.603 By MS/MS 1 1.0083 0.85968 NaN 1 Median NaN NaN NaN 0 0 Median 1.0083 0.85968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1882900 911020 971920 0 0 0 1882900 911020 971920 0 0 0 0 0 0 0 0 0 0 0 0 24638 852 25861 130765 131541 131541 1 MMITQGNMQLK EFRRNKSATEEDTIRMMITQGNMQLKELEK DTIRMMITQGNMQLKELEKTLALAKS____ R M M L K E 0 0 1 0 0 2 0 1 0 1 1 1 3 0 0 0 1 0 0 0 0 0 11 0 1293.6243 Q9NU23 Q9NU23 67 77 LYRM2 LYR motif-containing protein 2 yes yes 2 2.4949E-05 123.92 By matching By MS/MS 1 2 1.1555 1.0044 10.401 3 Median 1.1047 1.0044 NaN 1 0 Median 1.2702 1.052 14.216 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25020000 11716000 13304000 12898000 5997700 6899800 12122000 5717800 6404400 0 0 0 0 0 0 0 0 0 0 0 0 24639 4113 25862 130766;130767;130768 131542;131543 131542 2 MMLDDIVSR SVSLTGAPESVQKAKMMLDDIVSRGRGGPP SVQKAKMMLDDIVSRGRGGPPGQFHDNANG K M M S R G 0 1 0 2 0 0 0 0 0 1 1 0 2 0 0 1 0 0 0 1 0 0 9 0 1078.5151 Q92945;A0A087WTP3;M0R0I5;M0QYH3;M0QXW7 Q92945 206 214 KHSRP Far upstream element-binding protein 2 yes no 2 0.00055831 114.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 11 9 3 3 1.0865 1.0239 11.831 29 Median 0.97265 0.91964 NaN 1 0 Median 1.1417 1.0023 3.1873 2 0 Median 0.96381 1.0019 11.665 11 2 Median 1.1486 1.006 14.117 9 0 Median 1.1067 1.1159 5.2775 3 0 Median 1.3331 1.1308 7.0269 3 0 Median 450280000 222010000 228280000 34771000 18207000 16565000 20494000 9959800 10534000 308540000 154220000 154320000 67732000 30522000 37210000 16459000 8081100 8377400 2289700 1020200 1269500 24640 3568 25863;25864;25865 130769;130770;130771;130772;130773;130774;130775;130776;130777;130778;130779;130780;130781;130782;130783;130784;130785;130786;130787;130788;130789;130790;130791;130792;130793;130794;130795;130796;130797 131544;131545;131546;131547;131548;131549;131550;131551;131552;131553;131554;131555;131556;131557;131558;131559;131560;131561;131562;131563;131564;131565;131566;131567 131546 1780;1781 24 MMLEQER AKAKLITDLQDQNQKMMLEQERLRVEHEKL DLQDQNQKMMLEQERLRVEHEKLKATDQEK K M M E R L 0 1 0 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 7 0 935.42047 P33176 P33176 740 746 KIF5B Kinesin-1 heavy chain yes yes 2 0.00069362 138.62 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1511 0.96626 8.363 5 Median 0.99923 0.96626 NaN 1 0 Median 1.1602 0.98909 3.8318 2 0 Median NaN NaN NaN 0 0 Median 1.335 1.1485 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0809 0.92597 NaN 1 0 Median 18687000 8669000 10018000 3927600 2007200 1920400 12643000 5779500 6863400 0 0 0 1095000 441770 653210 0 0 0 1021200 440560 580630 24641 2221 25866 130798;130799;130800;130801;130802 131568;131569;131570 131570 3 MMLGTEGGEGFVVK ______________________________ ______________________________ - M M V K V 0 0 0 0 0 0 2 4 0 0 1 1 2 1 0 0 1 0 0 2 0 0 14 0 1453.6945 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;D6RDL0;D6RF17;D6R9D3;E5RJ94 P31943 1 14 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 5.8924E-08 141.95 By matching By matching By MS/MS By matching By MS/MS By matching 5 1 9 7 19 3 1.1877 1.1668 16.309 44 Median 1.2334 1.2162 11.856 5 0 Median 1.4308 1.2423 NaN 1 0 Median 1.1538 1.1067 30.472 9 1 Median 1.3323 1.0978 14.982 7 0 Median 1.1411 1.1941 7.6858 19 0 Median 1.2942 1.0645 8.0983 3 0 Median 260630000 122370000 138260000 5779600 2472400 3307200 129620 59308 70310 69021000 35270000 33751000 2137600 978270 1159300 178430000 81471000 96956000 5136500 2122700 3013800 24642 1136 25867;25868;25869 130803;130804;130805;130806;130807;130808;130809;130810;130811;130812;130813;130814;130815;130816;130817;130818;130819;130820;130821;130822;130823;130824;130825;130826;130827;130828;130829;130830;130831;130832;130833;130834;130835;130836;130837;130838;130839;130840;130841;130842;130843;130844;130845;130846 131571;131572;131573;131574;131575;131576;131577;131578;131579;131580;131581;131582;131583;131584;131585;131586;131587;131588;131589;131590;131591;131592;131593 131587 379;380 23 MMLSQIASK GLAGVSLVPTAASKKMMLSQIASKQAENGE TAASKKMMLSQIASKQAENGERAGSPDVLR K M M S K Q 1 0 0 0 0 1 0 0 0 1 1 1 2 0 0 2 0 0 0 0 0 0 9 0 1007.5144 Q8NDX6 Q8NDX6 26 34 ZNF740 Zinc finger protein 740 yes yes 2 0.010817 47.869 By MS/MS 1 1.0113 1.0377 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.0377 NaN 1 0 Median NaN NaN NaN 0 0 Median 4221500 2055800 2165700 0 0 0 0 0 0 0 0 0 0 0 0 4221500 2055800 2165700 0 0 0 24643 3426 25870 130847 131594 131594 1 MMLSTEGR ______________________________ ______________________________ - M M G R E 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 1 1 0 0 0 0 0 8 0 923.42047 P55795 P55795 1 8 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.010632 58.981 By MS/MS By matching By MS/MS 1 1 2 1.1393 1.1441 9.5653 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.138 1.142 NaN 1 0 Median 1.5204 1.3299 NaN 1 0 Median 1.1085 1.1013 5.6623 2 0 Median NaN NaN NaN 0 0 Median 10926000 5328900 5596800 0 0 0 0 0 0 4893300 2380400 2512900 412000 188170 223820 5620400 2760400 2860000 0 0 0 24644 2502 25871 130848;130849;130850;130851 131595;131596;131597;131598 131597 4 MMLTHLVVRPGLGSK RASVEERITQVAKKKMMLTHLVVRPGLGSK MMLTHLVVRPGLGSKTGSMSKQELDDILKF K M M S K T 0 1 0 0 0 0 0 2 1 0 3 1 2 0 1 1 1 0 0 2 0 0 15 1 1637.9109 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9;Q8TDI0;K7EMY3;Q12873 Q14839 1192 1206 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2;3;4 0.00010441 66.285 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 4 1 1.0496 1.1029 18.192 13 Median 1.3657 1.3855 NaN 1 0 Median 1.0496 1.0097 NaN 1 0 Median 0.92078 1.1029 14.29 3 0 Median 1.1448 1.1051 9.3369 3 0 Plateau 0.95961 1.0861 14.149 4 0 Median 2.0033 1.7469 NaN 1 0 Median 99299000 49066000 50233000 3308200 1284800 2023400 860560 364180 496380 59657000 28835000 30822000 3335500 1562100 1773400 30595000 16464000 14132000 1542500 556320 986140 24645 246;3471;2766 25872 130852;130853;130854;130855;130856;130857;130858;130859;130860;130861;130862;130863;130864 131599;131600;131601;131602;131603;131604;131605;131606;131607;131608 131599 10 MMMQSGR VAGVVSYPFDTVRRRMMMQSGRKGADIMYT PFDTVRRRMMMQSGRKGADIMYTGTVDCWR R M M G R K 0 1 0 0 0 1 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 7 0 839.3452 P05141;P12235;P12236 P12236 238 244 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.023925 56.122 By MS/MS By MS/MS By matching 2 4 1 1.5682 1.3236 12.075 7 Median 1.1117 1.082 4.1347 2 0 Median 1.5985 1.3671 2.1487 4 0 Median 1.1261 1.1076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9314300 3796000 5518300 2735700 1265300 1470300 6354200 2435100 3919100 224380 95514 128870 0 0 0 0 0 0 0 0 0 24646 1977;1861;1976 25873 130865;130866;130867;130868;130869;130870;130871 131609;131610;131611;131612;131613;131614;131615;131616;131617;131618 131616 10 MMMVLGAK RPLIAAKNPKIAVSKMMMVLGAKWREFSTN PKIAVSKMMMVLGAKWREFSTNNPFKGSSG K M M A K W 1 0 0 0 0 0 0 1 0 0 1 1 3 0 0 0 0 0 0 1 0 0 8 0 879.43804 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839 201 208 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0079765 64.803 By MS/MS By matching By matching By matching 1 1 2 3 1.2534 1.1892 11.221 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2188 1.3452 NaN 1 0 Median 1.3535 1.2585 NaN 1 0 Median 1.0839 1.0873 12.67 2 0 Median 1.358 1.1774 11.147 3 0 Median 19910000 9110200 10800000 0 0 0 0 0 0 11211000 5040000 6171100 635820 312960 322860 5853000 2865400 2987600 2210200 891820 1318400 24647 246 25874 130872;130873;130874;130875;130876;130877;130878 131619;131620 131620 2 MMNGGHYTYSENR GFGSKVTTHPLAKDKMMNGGHYTYSENRVE DKMMNGGHYTYSENRVEKDGLILTSRGPGT K M M N R V 0 1 2 0 0 0 1 2 1 0 0 0 2 0 0 1 1 0 2 0 0 0 13 0 1558.6293 Q99497;K7ELW0 Q99497 133 145 PARK7 Protein deglycase DJ-1 yes no 3 0.0065981 28.632 By MS/MS By matching 1 1 1.141 1.0132 4.9222 2 Median 1.1123 1.049 NaN 1 0 Median 1.1704 0.97851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3993500 1681800 2311600 3364100 1416700 1947400 629340 265140 364200 0 0 0 0 0 0 0 0 0 0 0 0 24648 3749 25875 130879;130880 131621;131622 131622 2 MMNGGHYTYSENRVEK GFGSKVTTHPLAKDKMMNGGHYTYSENRVE MNGGHYTYSENRVEKDGLILTSRGPGTSFE K M M E K D 0 1 2 0 0 0 2 2 1 0 0 1 2 0 0 1 1 0 2 1 0 0 16 1 1914.8353 Q99497;K7ELW0 Q99497 133 148 PARK7 Protein deglycase DJ-1 yes no 3;4 2.8228E-05 72.321 By MS/MS By MS/MS 3 4 1.1455 1.1187 10.191 7 Median 1.072 1.1187 12.627 3 0 Median 1.2518 1.1343 7.5491 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38538000 17920000 20618000 29118000 13404000 15714000 9420300 4516200 4904100 0 0 0 0 0 0 0 0 0 0 0 0 24649 3749 25876 130881;130882;130883;130884;130885;130886;130887 131623;131624;131625;131626;131627;131628;131629;131630 131626 8 MMNTIIFHTK SKASLGLADHRELGKMMNTIIFHTKMVDSL RELGKMMNTIIFHTKMVDSLVEMLVETSDL K M M T K M 0 0 1 0 0 0 0 0 1 2 0 1 2 1 0 0 2 0 0 0 0 0 10 0 1234.6202 Q9Y2A7 Q9Y2A7 515 524 NCKAP1 Nck-associated protein 1 yes yes 3 0.028073 22.917 By matching By matching By matching By MS/MS 1 1 1 1 1.0938 1.025 2.1242 4 Median 1.0355 1.0193 NaN 1 0 Median 1.1554 0.98924 NaN 1 0 Median 0.96369 1.0307 NaN 1 0 Median 1.2361 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8384300 4142400 4241900 3733100 1788500 1944600 1077900 514590 563330 2197400 1203800 993660 1375900 635530 740330 0 0 0 0 0 0 24650 4383 25877 130888;130889;130890;130891 131631 131631 1 MMQEQITDKNSLAYQR LTRTGGAYIPPAKLRMMQEQITDKNSLAYQ MQEQITDKNSLAYQRMSWEALKKSINGLIN R M M Q R M 1 1 1 1 0 3 1 0 0 1 1 1 2 0 0 1 1 0 1 0 0 0 16 1 1954.9241 B7WP74;Q9HCG8 B7WP74 141 156 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes no 3 4.4313E-05 60.474 By MS/MS 1 1.3083 1.4388 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3083 1.4388 NaN 1 0 Median NaN NaN NaN 0 0 Median 6481900 3096700 3385100 0 0 0 0 0 0 0 0 0 0 0 0 6481900 3096700 3385100 0 0 0 24651 627 25878 130892 131632 131632 1 MMQPFNKPSGTFIK STNVTVAAARGIKRKMMQPFNKPSGTFIKK KMMQPFNKPSGTFIKKPKLAKPMEKISLSK K M M I K K 0 0 1 0 0 1 0 1 0 1 0 2 2 2 2 1 1 0 0 0 0 0 14 1 1624.8106 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 241 254 ZNF326 DBIRD complex subunit ZNF326 yes no 2;3 0.00031489 89.171 By MS/MS 3 0.92533 1.0357 12.899 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92533 1.0357 12.899 3 1 Median NaN NaN NaN 0 0 Median 29800000 16787000 13013000 0 0 0 0 0 0 0 0 0 0 0 0 29800000 16787000 13013000 0 0 0 24652 3042 25879 130893;130894;130895 131633;131634 131634 2 MMRPVSDQVQIK LRFLKRQDLLNVLARMMRPVSDQVQIKVTM LARMMRPVSDQVQIKVTMNDEDMDTYVFAV R M M I K V 0 1 0 1 0 2 0 0 0 1 0 1 2 0 1 1 0 0 0 2 0 0 12 1 1430.7374 Q96A33 Q96A33 237 248 CCDC47 Coiled-coil domain-containing protein 47 yes yes 2;3 0.0052954 62.303 By MS/MS 2 1.414 1.3269 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.414 1.3269 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3563600 1370000 2193600 0 0 0 0 0 0 0 0 0 3563600 1370000 2193600 0 0 0 0 0 0 24653 3592 25880 130896;130897 131635;131636 131636 2 MMVAGFKK PGKYNILGTNTIMDKMMVAGFKKQMADTGK TNTIMDKMMVAGFKKQMADTGKLNTLLQRA K M M K K Q 1 0 0 0 0 0 0 1 0 0 0 2 2 1 0 0 0 0 0 1 0 0 8 1 910.47687 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 537 544 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.011337 64.803 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 7 5 1.1255 1.1905 16.84 17 Median 1.049 1.1005 NaN 1 0 Median 1.1495 1.0873 5.9345 2 1 Median 0.9252 1.0579 34.764 2 1 Median NaN NaN NaN 0 0 Median 1.1044 1.1982 6.9 7 1 Median 1.2888 1.1565 24.389 5 1 Median 191150000 89755000 101390000 8701000 3935100 4765900 13107000 6938500 6168800 7743500 3459400 4284100 0 0 0 134760000 64000000 70759000 26837000 11422000 15415000 24654 2680 25881;25882 130898;130899;130900;130901;130902;130903;130904;130905;130906;130907;130908;130909;130910;130911;130912;130913;130914 131637;131638;131639;131640;131641;131642;131643;131644;131645;131646;131647;131648;131649;131650;131651;131652;131653;131654;131655;131656;131657;131658 131647 1359;1360 22 MMVDKDGDVTVTNDGATILSMMDVDHQIAK ANTMRTSLGPNGLDKMMVDKDGDVTVTNDG ATILSMMDVDHQIAKLMVELSKSQDDEIGD K M M A K L 2 0 1 6 0 1 0 2 1 2 1 2 4 0 0 1 3 0 0 4 0 0 30 1 3249.5026 P48643;B7ZAR1;E9PCA1 P48643 60 89 CCT5 T-complex protein 1 subunit epsilon yes no 4 2.7268E-05 30.855 By MS/MS By matching 1 2 1.1128 1.0453 12.438 3 Plateau 1.1129 1.049 NaN 1 0 Median 0.97518 0.91668 13.721 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11199000 5038400 6160400 6474400 2777100 3697400 4724300 2261300 2463000 0 0 0 0 0 0 0 0 0 0 0 0 24655 2364 25883 130915;130916;130917 131659;131660 131659 2 MMVMVTASGK INIDTLARDEFNLQKMMVMVTASGKLFGIE FNLQKMMVMVTASGKLFGIESSSGTILWKQ K M M G K L 1 0 0 0 0 0 0 1 0 0 0 1 3 0 0 1 1 0 0 2 0 0 10 0 1053.5021 Q8N766;A0A286YEW0 Q8N766 535 544 EMC1 ER membrane protein complex subunit 1 yes no 2 0.0026643 72.928 By MS/MS 1 1.4921 1.2781 NaN 1 Median NaN NaN NaN 0 0 Median 1.4921 1.2781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4620700 1957200 2663500 0 0 0 4620700 1957200 2663500 0 0 0 0 0 0 0 0 0 0 0 0 24656 3392 25884 130918 131661 131661 1 MNAEFIMLNHFSQR KTHSTTSQAISVGMRMNAEFIMLNHFSQRY RMNAEFIMLNHFSQRYAKVPLFSPNFSEKV R M N Q R Y 1 1 2 0 0 1 1 0 1 1 1 0 2 2 0 1 0 0 0 0 0 0 14 0 1736.8127 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 715 728 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 3 0.0013993 37.55 By MS/MS 1 1.0229 0.99551 NaN 1 Median 1.0229 0.99551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3159900 1381000 1778900 3159900 1381000 1778900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24657 3782 25885 130919 131662;131663 131663 2 MNAEPERK ______________________________ ______________________________ - M N R K F 1 1 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 8 1 973.46511 P53004;C9J1E1 P53004 1 8 BLVRA Biliverdin reductase A yes no 2 0.016102 43.246 By MS/MS By matching By matching By matching 2 1 1 1 0.75961 0.71408 9.2739 5 Median 0.7108 0.7295 4.1288 2 0 Median NaN NaN NaN 0 0 Median 0.7674 0.87518 NaN 1 0 Median 0.81454 0.71408 NaN 1 0 Median 0.69343 0.69872 NaN 1 0 Median NaN NaN NaN 0 0 Median 2506600 1332800 1173800 1589600 823300 766260 0 0 0 431800 261870 169930 38224 20469 17754 447030 227150 219880 0 0 0 24658 2463 25886 130920;130921;130922;130923;130924 131664 131664 1 MNAGSDPVVIVSAAR ______________________________ MNAGSDPVVIVSAARTIIGSFNGALAAVPV - M N A R T 3 1 1 1 0 0 0 1 0 1 0 0 1 0 1 2 0 0 0 3 0 0 15 0 1485.761 Q9BWD1 Q9BWD1 1 15 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 1.2322E-06 95.401 By MS/MS 2 0.72114 0.71661 27.926 2 Median 0.72114 0.71661 27.926 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16243000 9076600 7166500 16243000 9076600 7166500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24659 3868 25887;25888 130925;130926 131665;131666;131667;131668 131666 1843 4 MNALFEGR MCPATQKLIEESQRKMNALFEGRRIEFAEQ IEESQRKMNALFEGRRIEFAEQINKMEARP K M N G R R 1 1 1 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 936.44874 Q9H307 Q9H307 263 270 PNN Pinin yes yes 2 0.0027953 104.75 By MS/MS By MS/MS 2 2 1.2102 1.1225 9.0542 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.168 1.2103 1.3406 2 0 Median 1.2404 1.0365 1.9777 2 0 Median 15282000 7057400 8225000 0 0 0 0 0 0 0 0 0 0 0 0 12562000 5909400 6652700 2720300 1148000 1572400 24660 3950 25889 130927;130928;130929;130930 131669;131670;131671;131672;131673 131671 5 MNAQETATGMAFEEPIDEK PSRARHFSEHPSTSKMNAQETATGMAFEEP ETATGMAFEEPIDEKKFEKTEDGGEFEEGA K M N E K K 3 0 1 1 0 1 4 1 0 1 0 1 2 1 1 0 2 0 0 0 0 0 19 0 2110.9187 O43719 O43719 411 429 HTATSF1 HIV Tat-specific factor 1 yes yes 2 1.1295E-07 68.809 By matching By MS/MS 1 1 0.83101 0.87047 1.281 2 Median 0.86692 0.86262 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79659 0.87839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6455600 3385400 3070200 2191500 1073900 1117600 0 0 0 4264100 2311500 1952600 0 0 0 0 0 0 0 0 0 24661 1586 25890 130931;130932 131674;131675 131674 2 MNDIVKEFEDR DVSLIERGESFYQDRMNDIVKEFEDRGFVQ YQDRMNDIVKEFEDRGFVQVDDGRKIVFVP R M N D R G 0 1 1 2 0 0 2 0 0 1 0 1 1 1 0 0 0 0 0 1 0 0 11 1 1394.65 P54136 P54136 342 352 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2;3 0.00087462 85.958 By MS/MS By matching 3 1 1.1782 1.1832 6.9988 4 Median 1.2012 1.2059 4.9524 3 2 Plateau 1.3949 1.2918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18029000 7956200 10073000 17363000 7718000 9645100 666400 238260 428150 0 0 0 0 0 0 0 0 0 0 0 0 24662 2480 25891 130933;130934;130935;130936 131676;131677;131678;131679 131677 4 MNDTVTIR ______________________________ ______________________________ - M N I R T 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 8 0 948.46987 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847 E7ETK0 1 8 RPS24 40S ribosomal protein S24 yes no 2 0.0020651 106.36 By MS/MS By MS/MS By matching By MS/MS By matching 4 3 1 2 1 1.2733 1.1298 21.868 11 Median 1.1166 1.0779 25.154 4 0 Median 1.2163 0.95465 12.857 3 0 Plateau 1.3269 1.2642 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3367 1.3844 4.3334 2 0 Median 1.48 1.1605 NaN 1 0 Median 86820000 38977000 47843000 60932000 27454000 33478000 19622000 8570800 11051000 3418500 1689300 1729200 0 0 0 1880700 862290 1018400 966860 401040 565820 24663 387 25892;25893 130937;130938;130939;130940;130941;130942;130943;130944;130945;130946;130947 131680;131681;131682;131683;131684;131685 131680 182 6 MNEAFGDTK DVQSIIGLQRFFETRMNEAFGDTKFSAVLV RFFETRMNEAFGDTKFSAVLVEPPPMSLPG R M N T K F 1 0 1 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 9 0 1011.4331 Q13263;M0R0K9 Q13263 796 804 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.00049856 120.15 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 1 3 1 1.0373 0.92714 9.6596 11 Median 0.97826 0.95646 11.548 2 0 Median 1.1016 0.93128 5.177 3 0 Median 0.87303 0.92714 NaN 1 0 Median 1.0706 0.937 NaN 1 0 Median 0.84866 0.87474 12.42 3 0 Median 1.2184 1.0181 NaN 1 0 Median 53586000 26617000 26968000 15662000 8602300 7059900 25723000 11983000 13740000 2487900 1255200 1232700 372050 177020 195030 8891100 4428700 4462300 449590 170620 278970 24664 2802 25894 130948;130949;130950;130951;130952;130953;130954;130955;130956;130957;130958;130959 131686;131687;131688;131689;131690;131691;131692;131693;131694;131695 131695 10 MNEFLENFEK GIFYEFRSYYLKPSKMNEFLENFEKNAHLR LKPSKMNEFLENFEKNAHLRTAHSELVGYW K M N E K N 0 0 2 0 0 0 3 0 0 0 1 1 1 2 0 0 0 0 0 0 0 0 10 0 1299.5805 Q9UFN0 Q9UFN0 49 58 NIPSNAP3A Protein NipSnap homolog 3A yes yes 2 0.00037664 80.755 By MS/MS By matching By matching By matching 1 1 1 1 1.1105 1.0104 17.164 4 Median 1.0783 1.0061 NaN 1 0 Median 1.6011 1.3569 NaN 1 0 Median 1.0571 1.0147 NaN 1 0 Median 1.1437 0.9115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18287000 8924900 9362300 13547000 6819100 6728200 2169700 834510 1335200 2504000 1243400 1260600 66192 27941 38251 0 0 0 0 0 0 24665 4259 25895 130960;130961;130962;130963 131696 131696 1 MNESDAWFEEK MVNKAADAVNKMTIKMNESDAWFEEKQQQF MTIKMNESDAWFEEKQQQFENLDQQLRKLH K M N E K Q 1 0 1 1 0 0 3 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 11 0 1384.5605 O60749 O60749 299 309 SNX2 Sorting nexin-2 yes yes 2 0.0007518 63.283 By MS/MS 2 1.1254 1.057 15.113 2 Median 1.1254 1.057 15.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15964000 7672900 8291600 15964000 7672900 8291600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24666 1629 25896 130964;130965 131697 131697 1 MNEVISLWK LIDVNHYAKDEVAARMNEVISLWKKLLEAT DEVAARMNEVISLWKKLLEATELKGIKLRE R M N W K K 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 1 0 1 0 1 0 0 9 0 1118.5794 A0A0D9SF54;Q13813 Q13813 653 661 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0021041 74.301 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 1 1 1.0318 1.0515 27.544 11 Median 1.3623 1.3362 8.6968 2 0 Median 1.5797 1.3953 40.008 2 0 Median 0.96333 1.0611 19.995 3 1 Median 1.0781 0.99153 7.9338 2 0 Median 0.93128 0.98721 NaN 1 0 Median 0.76915 0.66599 NaN 1 0 Median 62787000 28981000 33806000 13794000 6136800 7656700 13827000 5680500 8146000 31573000 15310000 16262000 1388400 646100 742290 1971600 1076600 895060 233800 130690 103110 24667 264;2838 25897;25898 130966;130967;130968;130969;130970;130971;130972;130973;130974;130975;130976 131698;131699;131700;131701;131702;131703;131704;131705;131706;131707 131702 129 10 MNFESFVK GPAGAKNLQSVVLSKMNFESFVKDLLLVRQ QSVVLSKMNFESFVKDLLLVRQYRVEVYKN K M N V K D 0 0 1 0 0 0 1 0 0 0 0 1 1 2 0 1 0 0 0 1 0 0 8 0 1000.4688 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8;C9J809 P43246 83 90 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.020415 46.426 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.3494 1.1384 12.687 5 Median 0.96523 0.94645 NaN 1 0 Median 1.4003 1.2474 8.0003 2 0 Median 0.94622 1.0352 NaN 1 0 Median 1.3585 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15525000 7921200 7604200 4200000 2136300 2063700 1571900 713610 858320 8672200 4611900 4060300 1081300 459320 621930 0 0 0 0 0 0 24668 2324 25899 130977;130978;130979;130980;130981 131708;131709;131710 131710 3 MNFSTLR PLELSEKNFQLNQDKMNFSTLRNIQGLFAP NFQLNQDKMNFSTLRNIQGLFAPLKLQMEF K M N L R N 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 0 7 0 867.42727 Q9Y244;A0A1W2PS02 Q9Y244 62 68 POMP Proteasome maturation protein yes no 2 0.0061063 94.407 By matching By MS/MS By matching 1 1 1 1.3709 1.1643 25.437 3 Median 1.7044 1.7132 NaN 1 0 Median 1.3709 1.1643 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3279 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10511000 4395900 6115100 2379700 931670 1448000 7921600 3386600 4535000 0 0 0 209660 77547 132110 0 0 0 0 0 0 24669 4372 25900 130982;130983;130984 131711 131711 1 MNGTLDHPDQPDLDAIK MVDHCSLNSSPVSKKMNGTLDHPDQPDLDA GTLDHPDQPDLDAIKMFVGQVPRTWSEKDL K M N I K M 1 0 1 4 0 1 0 1 1 1 2 1 1 0 2 0 1 0 0 0 0 0 17 0 1878.8782 G5EA30;Q92879;E9PSH0;E9PQK4;E9PKU1;E9PKA1;F5H4Y5;F5H0D8 G5EA30 28 44 CELF1 CUGBP Elav-like family member 1 yes no 2 1.7314E-07 72.705 By MS/MS By matching 2 1 0.72914 0.7189 18.718 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80089 0.79413 14.076 2 1 Median 0.68937 0.60346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11281000 6438700 4841900 0 0 0 0 0 0 10850000 6219700 4630000 430870 219020 211850 0 0 0 0 0 0 24670 1133 25901 130985;130986;130987 131712;131713 131712 2 MNIFGGFR RLKIMMQVHGSKSDKMNIFGGFRQMVKEGG HGSKSDKMNIFGGFRQMVKEGGIRSLWRGN K M N F R Q 0 1 1 0 0 0 0 2 0 1 0 0 1 2 0 0 0 0 0 0 0 0 8 0 940.45891 Q6NUK1 Q6NUK1 232 239 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.014501 50.966 By MS/MS By matching 1 1 1.2519 1.2375 20.729 2 Median 1.0714 1.0688 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4627 1.4329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4078000 2023900 2054100 3279800 1645400 1634400 0 0 0 798230 378560 419670 0 0 0 0 0 0 0 0 0 24671 3143 25902 130988;130989 131714 131714 1 MNKSEDDESGAGELTR GLLSETYLEAHRIVKMNKSEDDESGAGELT NKSEDDESGAGELTREELRQIAEEDFYEKL K M N T R E 1 1 1 2 0 0 3 2 0 0 1 1 1 0 0 2 1 0 0 0 0 0 16 1 1737.7476 P33993 P33993 306 321 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.0015709 33.624 By MS/MS By matching By MS/MS 1 1 1 0.84576 0.86779 29.553 3 Median 0.84576 0.86779 NaN 1 0 Median 1.4113 1.4164 NaN 1 0 Median 0.78429 0.83255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13896000 7045500 6850700 6345700 3426300 2919400 913030 334460 578570 6637400 3284700 3352700 0 0 0 0 0 0 0 0 0 24672 2225 25903 130990;130991;130992 131715;131716;131717;131718 131715 4 MNKSEDDESGAGELTREELR GLLSETYLEAHRIVKMNKSEDDESGAGELT DDESGAGELTREELRQIAEEDFYEKLAASI K M N L R Q 1 2 1 2 0 0 5 2 0 0 2 1 1 0 0 2 1 0 0 0 0 0 20 2 2265.0179 P33993 P33993 306 325 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.067238 8.4704 By MS/MS 1 0.72576 0.73208 NaN 1 Median 0.72576 0.73208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5294700 1945000 3349700 5294700 1945000 3349700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24673 2225 25904 130993 131719 131719 1 MNLASEPQEVLHIGSAHNR WSPLVTEEGKRHPYKMNLASEPQEVLHIGS SEPQEVLHIGSAHNRSAMPFTASPASSTTA K M N N R S 2 1 2 0 0 1 2 1 2 1 2 0 1 0 1 2 0 0 0 1 0 0 19 0 2102.0327 O00151 O00151 104 122 PDLIM1 PDZ and LIM domain protein 1 yes yes 3;4 8.2493E-14 105.89 By MS/MS By MS/MS By matching 4 3 1 0.84345 0.84614 20.773 8 Median 0.77122 0.7519 14.538 4 2 Median 1.1943 1.0066 17.326 3 0 Median 0.82375 0.81566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173460000 88958000 84498000 110320000 60150000 50167000 58210000 26751000 31459000 4929600 2057200 2872400 0 0 0 0 0 0 0 0 0 24674 1442 25905 130994;130995;130996;130997;130998;130999;131000;131001 131720;131721;131722;131723;131724;131725;131726;131727 131720 8 MNLGVGAYR LGVTEAFKRDTNSKKMNLGVGAYRDDNGKP DTNSKKMNLGVGAYRDDNGKPYVLPSVRKA K M N Y R D 1 1 1 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 979.49094 P00505 P00505 60 68 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.00039012 134.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.87391 0.85624 27.55 5 Median 0.94576 0.94578 NaN 1 0 Median 1.1116 0.94983 36.552 2 0 Median 0.7863 0.85624 NaN 1 0 Median 0.66358 0.58939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90176000 41429000 48747000 23332000 12152000 11180000 55846000 23453000 32393000 9836400 5230800 4605500 1161900 593430 568450 0 0 0 0 0 0 24675 1823 25906 131002;131003;131004;131005;131006 131728;131729;131730;131731;131732;131733;131734 131729 7 MNLGVGAYRDDNGKPYVLPSVR LGVTEAFKRDTNSKKMNLGVGAYRDDNGKP YRDDNGKPYVLPSVRKAEAQIAAKNLDKEY K M N V R K 1 2 2 2 0 0 0 3 0 0 2 1 1 0 2 1 0 0 2 3 0 0 22 2 2420.2271 P00505 P00505 60 81 GOT2 Aspartate aminotransferase, mitochondrial yes yes 3;4 1.3957E-09 58.366 By MS/MS 2 0.74588 0.84086 3.3128 2 Median 0.74588 0.84086 3.3128 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25980000 15108000 10872000 25980000 15108000 10872000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24676 1823 25907 131007;131008 131735;131736;131737;131738 131735 4 MNLLNQQIQEELSR TKDGELKMLQEEVTKMNLLNQQIQEELSRV KMNLLNQQIQEELSRVTKLKETAEEEKDDL K M N S R V 0 1 2 0 0 3 2 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 14 0 1714.8672 Q14789 Q14789 1894 1907 GOLGB1 Golgin subfamily B member 1 yes yes 2 8.131E-43 220.25 By MS/MS By MS/MS By matching 2 1 1 1.1963 1.1329 15.073 4 Median 1.1488 1.1329 2.8809 2 0 Median 1.2037 0.96603 NaN 1 0 Median 1.2408 1.3922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39781000 18192000 21589000 23629000 11151000 12479000 15292000 6680200 8612000 859370 361290 498080 0 0 0 0 0 0 0 0 0 24677 2900 25908 131009;131010;131011;131012 131739;131740;131741;131742;131743 131740 5 MNLPGEVTFLPLNK DSDEVSTKILMEFNKMNLPGEVTFLPLNKL KMNLPGEVTFLPLNKLDVRDTAYPETNDAI K M N N K L 0 0 2 0 0 0 1 1 0 0 3 1 1 1 2 0 1 0 0 1 0 0 14 0 1571.8381 Q9UQE7 Q9UQE7 579 592 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0004472 70.1 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 0.70535 0.65273 35.9 7 Median NaN NaN NaN 0 0 Median 0.9033 0.78505 NaN 1 0 Median 0.8646 0.95026 73.99 2 0 Median 0.71734 0.60099 NaN 1 0 Median 0.65434 0.67885 5.5476 2 0 Median 0.70535 0.61205 NaN 1 0 Median 50894000 30135000 20759000 0 0 0 3066700 1697100 1369500 17692000 10820000 6871900 1054800 625710 429110 28897000 16889000 12008000 184670 103740 80927 24678 4362 25909 131013;131014;131015;131016;131017;131018;131019 131744;131745;131746;131747;131748;131749;131750;131751 131747 8 MNLSAIQDR RDLPNALDEKQLIEKMNLSAIQDREICCYS KQLIEKMNLSAIQDREICCYSISCKEKDNI K M N D R E 1 1 1 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 9 0 1046.5179 Q9NVJ2 Q9NVJ2 147 155 ARL8B ADP-ribosylation factor-like protein 8B no no 2 0.00095989 88.37 By MS/MS By MS/MS 1 1 1.1573 1.0347 14.908 2 Median 0.96525 0.93116 NaN 1 0 Median 1.3875 1.1497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33125000 15077000 18047000 16471000 8132700 8338600 16653000 6944500 9708800 0 0 0 0 0 0 0 0 0 0 0 0 24679 4134 25910 131020;131021 131752;131753;131754 131753 3 MNNPSETSKPSMESGDGNTGTQTNGLDFQK ______________________________ DGNTGTQTNGLDFQKQPVPVGGAISTAQAQ - M N Q K Q 0 0 4 2 0 2 2 4 0 0 1 2 2 1 2 4 4 0 0 0 0 0 30 1 3171.3721 P14859;A0A0A0MT46 P14859 1 30 POU2F1 POU domain, class 2, transcription factor 1;POU domain protein yes no 3 3.5133E-05 29.346 By matching By MS/MS 1 1 0.73138 0.77293 26.845 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55918 0.63929 NaN 1 0 Median 0.9566 0.9345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6794800 4106200 2688600 0 0 0 0 0 0 4552100 2910100 1642000 2242600 1196100 1046500 0 0 0 0 0 0 24680 2010 25911 131022;131023 131755 131755 1 MNNSGADEIGK ______________________________ ______________________________ - M N G K L 1 0 2 1 0 0 1 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 11 0 1134.4975 K7EQ55;K7EK33;Q96EP5;K7EQ02 K7EQ55 1 11 DAZAP1 DAZ-associated protein 1 yes no 2 0.00028618 94.692 By MS/MS By MS/MS 1 1 1.0233 0.95272 6.1165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94672 0.91239 NaN 1 0 Median 1.1061 0.99483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28110000 13981000 14129000 0 0 0 0 0 0 15257000 7810800 7445800 12853000 6170400 6682800 0 0 0 0 0 0 24681 1367 25912 131024;131025 131756;131757;131758 131758 3 MNNVNVVYTPWSNLK DCAHLVKANSIQGCKMNNVNVVYTPWSNLK MNNVNVVYTPWSNLKKTADMDVGQIGFHRQ K M N L K K 0 0 4 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 3 0 0 15 0 1777.8821 Q86WR0 Q86WR0 85 99 CCDC25 Coiled-coil domain-containing protein 25 yes yes 2 0.048135 23.376 By MS/MS By matching 1 1 0.97518 0.85685 24.904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75377 0.7185 NaN 1 0 Median 1.2616 1.0218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1435600 803310 632310 0 0 0 0 0 0 1257300 706400 550850 178360 96906 81457 0 0 0 0 0 0 24682 3295 25913 131026;131027 131759 131759 1 MNNVNVVYTPWSNLKK DCAHLVKANSIQGCKMNNVNVVYTPWSNLK NNVNVVYTPWSNLKKTADMDVGQIGFHRQK K M N K K T 0 0 4 0 0 0 0 0 0 0 1 2 1 0 1 1 1 1 1 3 0 0 16 1 1905.9771 Q86WR0 Q86WR0 85 100 CCDC25 Coiled-coil domain-containing protein 25 yes yes 3 0.025649 15.155 By MS/MS 1 0.8765 0.89155 NaN 1 Median 0.8765 0.89155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7854000 3504900 4349100 7854000 3504900 4349100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24683 3295 25914 131028 131760 131760 1 MNPAAFDFLLQR LESGVFRSDIPCRFRMNPAAFDFLLQRVEK RFRMNPAAFDFLLQRVEKTLRHALEEEEKV R M N Q R V 2 1 1 1 0 1 0 0 0 0 2 0 1 2 1 0 0 0 0 0 0 0 12 0 1421.7126 Q07864;F5H1D6 Q07864 562 573 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.0044584 52.79 By MS/MS By matching By matching 2 2 1 1.0492 0.97595 14.877 4 Median 1.0928 1.0865 NaN 1 0 Median 1.1565 1.0061 19.477 2 0 Median NaN NaN NaN 0 0 Median 0.9838 0.86145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1721600 801230 920320 765030 368280 396740 678980 292400 386570 0 0 0 277550 140540 137000 0 0 0 0 0 0 24684 1020 25915 131029;131030;131031;131032;131033 131761;131762 131761 2 MNPEYDYLFK ______________________________ ______________________________ - M N F K L 0 0 1 1 0 0 1 0 0 0 1 1 1 1 1 0 0 0 2 0 0 0 10 0 1318.5904 Q9H0U4;E9PLD0 Q9H0U4 1 10 RAB1B Ras-related protein Rab-1B yes no 2 0.0036602 56.258 By MS/MS By matching By matching By matching 8 2 1 1 1.0151 0.95077 10.308 12 Median 1.0151 0.95077 5.1365 8 0 Median 0.9333 0.8234 23.188 2 0 Median 0.83382 0.90766 NaN 1 0 Median 1.1842 0.96034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71419000 34586000 36833000 69997000 33923000 36074000 1139500 539350 600190 92384 46247 46137 189620 77026 112590 0 0 0 0 0 0 24685 3929 25916 131034;131035;131036;131037;131038;131039;131040;131041;131042;131043;131044;131045 131763;131764 131763 2 MNPGDLQWMTAGR GGSMAHEDFCGHTGKMNPGDLQWMTAGRGI GKMNPGDLQWMTAGRGILHAEMPCSEEPAH K M N G R G 1 1 1 1 0 1 0 2 0 0 1 0 2 0 1 0 1 1 0 0 0 0 13 0 1475.665 O00625 O00625 85 97 PIR Pirin yes yes 2 0.00032535 76.927 By MS/MS By matching By matching By matching 1 1 1 1 0.86736 0.80648 28.114 4 Median 0.83068 0.77772 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51004 0.49041 NaN 1 0 Median 0.99345 0.83631 NaN 1 0 Median 0.90566 0.92641 NaN 1 0 Median NaN NaN NaN 0 0 Median 16476000 8864100 7611600 12929000 7233000 5696400 0 0 0 803820 557420 246400 111580 61085 50491 2630900 1012600 1618300 0 0 0 24686 1474 25917 131046;131047;131048;131049 131765;131766 131765 2 MNPIVVVHGGGAGPISK ______________________________ PIVVVHGGGAGPISKDRKERVHQGMVRAAT - M N S K D 1 0 1 0 0 0 0 4 1 2 0 1 1 0 2 1 0 0 0 3 0 0 17 0 1631.8817 Q7L266;E9PJK6;A0A087WUG3 Q7L266 1 17 ASRGL1 Isoaspartyl peptidase/L-asparaginase;Isoaspartyl peptidase/L-asparaginase alpha chain;Isoaspartyl peptidase/L-asparaginase beta chain yes no 2 7.0946E-06 83.204 By MS/MS By matching 1 1 1.118 1.0074 41.253 2 Median 0.80791 0.75248 NaN 1 0 Median 1.5472 1.3485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8206600 4512000 3694600 8072200 4450200 3622000 134370 61799 72569 0 0 0 0 0 0 0 0 0 0 0 0 24687 3220 25918 131050;131051 131767;131768 131768 2 MNPQSAFFQGK ITMADSDFLALMTGKMNPQSAFFQGKLKIT MTGKMNPQSAFFQGKLKITGNMGLAMKLQN K M N G K L 1 0 1 0 0 2 0 1 0 0 0 1 1 2 1 1 0 0 0 0 0 0 11 0 1253.5863 P22307 P22307 512 522 SCP2 Non-specific lipid-transfer protein yes yes 2 0.00016956 130.56 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 1 1.1015 0.99337 9.2349 10 Median 1.0976 0.97912 1.9411 3 0 Median 1.4103 1.1753 4.0108 3 0 Median 1.0386 0.99686 2.4247 3 2 Plateau 1.4728 1.1875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 261280000 117850000 143430000 126800000 59608000 67196000 94798000 39496000 55302000 34152000 16589000 17563000 5525100 2155400 3369800 0 0 0 0 0 0 24688 2099 25919;25920 131052;131053;131054;131055;131056;131057;131058;131059;131060;131061 131769;131770;131771;131772;131773;131774;131775;131776;131777;131778;131779;131780;131781;131782;131783;131784;131785 131775 860 17 MNQLTQELFSLKR EMTFMKNVLKETNFKMNQLTQELFSLKRER FKMNQLTQELFSLKRERESVEKIQSIPENS K M N K R E 0 1 1 0 0 2 1 0 0 0 3 1 1 1 0 1 1 0 0 0 0 0 13 1 1606.8501 A0A0A0MRF6;Q99996;A0A0A0MRE9;H7BYL6 A0A0A0MRF6 2434 2446 AKAP9 A-kinase anchor protein 9 yes no 3 0.027611 25.718 By MS/MS By matching 1 1 0.60204 0.53205 67.269 2 Median 0.83305 0.85611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43509 0.33066 NaN 1 0 Median 4221000 1877300 2343700 3921700 1651900 2269700 0 0 0 0 0 0 0 0 0 0 0 0 299330 225340 73987 24689 158 25921 131062;131063 131786 131786 0 MNRPAPVEISYENMR ______________________________ MNRPAPVEISYENMRFLITHNPTNATLNKF - M N M R F 1 2 2 0 0 0 2 0 0 1 0 0 2 0 2 1 0 0 1 1 0 0 15 1 1805.8553 Q12974;E9PMY3;E9PML8;E9PJC0;E9PRR9;E9PL34 Q12974 1 15 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 2 0.00016259 56.225 By MS/MS By matching By matching By matching 1 1 1 1 0.84821 0.76769 28.069 4 Median 0.57308 0.60069 NaN 1 0 Median 0.76725 0.7019 NaN 1 0 Median 1.1139 1.1549 NaN 1 0 Median 0.93772 0.83965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14773000 8393600 6379800 11122000 6791900 4330100 1401300 709900 691360 2017600 767260 1250400 232460 124490 107970 0 0 0 0 0 0 24690 2776 25922 131064;131065;131066;131067 131787;131788 131787 2 MNSLEQAEDLKAFER ______________________________ MNSLEQAEDLKAFERRLTEYIHCLQPATGR - M N E R R 2 1 1 1 0 1 3 0 0 0 2 1 1 1 0 1 0 0 0 0 0 0 15 1 1779.8461 Q8N9A8;H3BN40 Q8N9A8 1 15 CNEP1R1 Nuclear envelope phosphatase-regulatory subunit 1 yes no 2 0.0040242 44.765 By MS/MS 1 1.0389 1.0861 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0389 1.0861 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589300 794200 795090 0 0 0 0 0 0 1589300 794200 795090 0 0 0 0 0 0 0 0 0 24691 3397 25923 131068 131789 131789 1720 1 MNSLPAER EKGSETDSAQDQPVKMNSLPAERIQEIQKA AQDQPVKMNSLPAERIQEIQKAIELFSVGQ K M N E R I 1 1 1 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 8 0 916.44365 P30419;K7EN82;B7Z8J4 P30419 81 88 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 2 0.011097 57.59 By MS/MS By matching 1 1 0.87454 0.82188 12.728 2 Median 0.73978 0.75114 NaN 1 0 Median 1.0338 0.89928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2731400 1425900 1305600 1313800 761920 551880 1417600 663970 753670 0 0 0 0 0 0 0 0 0 0 0 0 24692 2193 25924 131069;131070 131790 131790 1 MNSNVENLPPHIIR ______________________________ ______________________________ - M N I R L 0 1 3 0 0 0 1 0 1 2 1 0 1 0 2 1 0 0 0 1 0 0 14 0 1632.8406 Q16763;K7EPJ1;K7EM75 Q16763 1 14 UBE2S Ubiquitin-conjugating enzyme E2 S yes no 2 0.00037601 69.01 By MS/MS By matching 2 1 1.0181 0.96764 34.799 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1145 1.0621 13.175 2 1 Median 0.72373 0.59425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7398900 3612500 3786400 0 0 0 0 0 0 6978900 3341500 3637400 420030 271050 148980 0 0 0 0 0 0 24693 2997 25925;25926 131071;131072;131073 131791;131792 131792 1643 2 MNTLQAIWMMDPK YSNFVSFPLYLNGRRMNTLQAIWMMDPKDV RRMNTLQAIWMMDPKDVREWQHEEFYRYVA R M N P K D 1 0 1 1 0 1 0 0 0 1 1 1 3 0 1 0 1 1 0 0 0 0 13 0 1577.7404 I3L0K7;I3L239;Q12931 Q12931 292 304 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.025504 28.013 By MS/MS By matching By matching 2 1 1 1.0576 1.0106 16.776 4 Median 0.93729 0.90638 0.3413 2 0 Median 1.3055 1.1241 NaN 1 0 Median 1.1886 1.272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10429000 4738000 5691300 6567400 3235000 3332400 2858300 1047200 1811000 1003700 455810 547900 0 0 0 0 0 0 0 0 0 24694 2771;1269 25927 131074;131075;131076;131077 131793;131794 131793 2 MNTNPSRGPYHFR FYRNKLKYLAFLRKRMNTNPSRGPYHFRAP KRMNTNPSRGPYHFRAPSRIFWRTVRGMLP R M N F R A 0 2 2 0 0 0 0 1 1 0 0 0 1 1 2 1 1 0 1 0 0 0 13 1 1575.7365 P40429;M0QYS1;Q8J015 P40429 62 74 RPL13A;RPL13a 60S ribosomal protein L13a yes no 3 0.010688 26.532 By MS/MS By matching 1 1 0.90861 0.872 1.948 2 Median NaN NaN NaN 0 0 Median 1.0127 0.86007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8152 0.88409 NaN 1 0 Median NaN NaN NaN 0 0 Median 2558700 1338500 1220200 0 0 0 1045900 486540 559360 0 0 0 0 0 0 1512800 851940 660870 0 0 0 24695 2288 25928 131078;131079 131795 131795 1 MNTVFHIWK HSELVGYWSVEFGGRMNTVFHIWKYDNFAH VEFGGRMNTVFHIWKYDNFAHRTEVRKALA R M N W K Y 0 0 1 0 0 0 0 0 1 1 0 1 1 1 0 0 1 1 0 1 0 0 9 0 1174.5957 Q9UFN0 Q9UFN0 81 89 NIPSNAP3A Protein NipSnap homolog 3A yes yes 2 0.0056277 57.047 By MS/MS By matching 1 1 1.0085 0.94548 1.2533 2 Median 1.025 0.9539 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99229 0.93714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21792000 10754000 11039000 16650000 8264000 8386100 0 0 0 5142000 2489600 2652400 0 0 0 0 0 0 0 0 0 24696 4259 25929 131080;131081 131796;131797 131797 2 MNVGTAHSEVNPNTR ______________________________ MNVGTAHSEVNPNTRVMNSRGIWLSYVLAI - M N T R V 1 1 3 0 0 0 1 1 1 0 0 0 1 0 1 1 2 0 0 2 0 0 15 0 1625.758 J3QRM9;Q8N138 J3QRM9 1 15 ORMDL3 ORM1-like protein 3 yes no 2 1.3622E-06 95.094 By MS/MS By MS/MS 1 1 0.63867 0.57312 18.263 2 Median 0.67219 0.65212 NaN 1 0 Median 0.60682 0.50369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13953000 8671300 5281500 11767000 7195900 4571000 2185800 1475400 710460 0 0 0 0 0 0 0 0 0 0 0 0 24697 1351 25930 131082;131083 131798;131799;131800;131801 131799 4 MNVGVAHSEVNPNTR ______________________________ MNVGVAHSEVNPNTRVMNSRGIWLAYIILV - M N T R V 1 1 3 0 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 3 0 0 15 0 1623.7787 Q53FV1;F6WST4;A0A1B0GXE7;Q9P0S3 Q53FV1 1 15 ORMDL2;ORMDL1 ORM1-like protein 2;ORM1-like protein 1 yes no 2 5.4301E-08 150.69 By MS/MS By MS/MS 2 4 0.97082 0.85459 9.0103 6 Median 0.96047 0.93852 2.0858 2 0 Median 0.97082 0.81653 6.6176 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62469000 32832000 29637000 34702000 19123000 15579000 27767000 13709000 14058000 0 0 0 0 0 0 0 0 0 0 0 0 24698 3029 25931;25932 131084;131085;131086;131087;131088;131089 131802;131803;131804;131805;131806;131807;131808;131809;131810;131811;131812 131811 1656 11 MNVLADALK ______________________________ ______________________________ R M N L K S 2 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 973.52665 H3BN98;I3L3P7;P62244;I3L246;H3BV27;H3BT37;I3L303 I3L3P7 4 12 RPS15A 40S ribosomal protein S15a no no 2 0.0017097 78.516 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 2 4 1 3 1.1746 1.0107 23.79 20 Median 0.97802 0.8679 27.006 5 1 Median 1.1285 0.97808 7.3102 5 0 Median 1.2037 1.1475 16.14 2 0 Median 1.3399 1.0786 20.461 4 0 Median 1.1779 1.2757 NaN 1 0 Median 1.6196 1.3319 23.975 3 0 Median 748030000 335200000 412830000 371480000 171230000 200250000 291330000 127760000 163570000 39708000 17306000 22402000 15872000 6818600 9053500 17800000 7396700 10403000 11837000 4691200 7145800 24699 1289;1213 25933;25934 131090;131091;131092;131093;131094;131095;131096;131097;131098;131099;131100;131101;131102;131103;131104;131105;131106;131107;131108;131109 131813;131814;131815;131816;131817;131818;131819;131820;131821;131822;131823;131824;131825;131826;131827;131828;131829;131830;131831;131832;131833;131834;131835;131836 131833 409;426 24 MNVSPDVNYEELAR NEEARARIMQIHSRKMNVSPDVNYEELARC KMNVSPDVNYEELARCTDDFNGAQCKAVCV K M N A R C 1 1 2 1 0 0 2 0 0 0 1 0 1 0 1 1 0 0 1 2 0 0 14 0 1635.7563 R4GNH3;P17980;E9PM69 R4GNH3 357 370 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0028879 57.836 By MS/MS 1 1.0021 0.97926 NaN 1 Median 1.0021 0.97926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5608200 2448800 3159400 5608200 2448800 3159400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24700 2050 25935 131110 131837 131837 1 MNYFQVAK TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN VVTLSNRMNYFQVAKTVAQRLNTDPMLLQF R M N A K T 1 0 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 8 0 999.48479 Q93009;H3BND8 Q93009 817 824 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0063273 71.715 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.2595 1.1453 10.131 4 Median NaN NaN NaN 0 0 Median 1.3311 1.143 NaN 1 0 Median 1.0746 1.1476 NaN 1 1 Median 1.1917 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5907 1.3023 NaN 1 0 Median 19598000 9034500 10563000 0 0 0 4263300 1847000 2416200 12589000 6055000 6534500 2406300 1020400 1386000 0 0 0 338470 112150 226320 24701 3574 25936 131111;131112;131113;131114 131838;131839;131840 131840 3 MNYSDAIVWLK ELNPNFQPPKRPFKRMNYSDAIVWLKEHDV PFKRMNYSDAIVWLKEHDVKKEDGTFYEFG R M N L K E 1 0 1 1 0 0 0 0 0 1 1 1 1 0 0 1 0 1 1 1 0 0 11 0 1338.6642 O43776 O43776 391 401 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.022328 34.253 By matching By matching By MS/MS 1 1 1 1.2363 1.2431 11.105 3 Plateau 1.2049 1.1575 NaN 1 0 Median 1.1856 1.0248 NaN 1 0 Median 1.2686 1.2792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10083000 4577400 5505700 3804500 1799700 2004800 1764400 861190 903170 4514300 1916600 2597700 0 0 0 0 0 0 0 0 0 24702 1589 25937 131115;131116;131117 131841 131841 1 MNYSGDQGQTIR VPTLGSQEGAFENVRMNYSGDQGQTIRQLI NVRMNYSGDQGQTIRQLISAHVLRRVAMCV R M N I R Q 0 1 1 1 0 2 0 2 0 1 0 0 1 0 0 1 1 0 1 0 0 0 12 0 1368.6092 Q5T4S7;A0A0A0MSW0 Q5T4S7 1875 1886 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 3.2326E-06 157.95 By matching By MS/MS 1 1 1.1153 1.0294 10.142 2 Median 1.0961 1.1059 NaN 1 0 Median 1.1348 0.95813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6312800 2732200 3580600 1744200 765110 979080 4568600 1967100 2601500 0 0 0 0 0 0 0 0 0 0 0 0 24703 3089 25938 131118;131119 131842;131843 131843 2 MPAAPRGPAQGEAAAR ______________________________ PAAPRGPAQGEAAARTRSRDASTSRRFTPP - M P A R T 6 2 0 0 0 1 1 2 0 0 0 0 1 0 3 0 0 0 0 0 0 0 16 1 1549.7783 A8MZI9 A8MZI9 1 16 RUNX1 yes yes 2 0.012978 54.776 By MS/MS 1 3.3653 3.592 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.3653 3.592 NaN 1 1 Median NaN NaN NaN 0 0 Median 10079000 664730 9414300 0 0 0 0 0 0 0 0 0 0 0 0 10079000 664730 9414300 0 0 0 24704 551 25939 131120 131844 131844 215 1 MPAILDGEEAVSK ITVDSCKGLSDIHHRMPAILDGEEAVSKWL HRMPAILDGEEAVSKWLDFGEVSTQEALKL R M P S K W 2 0 0 1 0 0 2 1 0 1 1 1 1 0 1 1 0 0 0 1 0 0 13 0 1358.6752 D6R9T3;E7EMP6;Q96FZ2;D6RGK7;D6RAI0;D6RAZ3 D6R9T3 165 177 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes no 2 0.00042159 84.658 By MS/MS 2 0.86964 0.9084 9.8424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86964 0.9084 9.8424 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14535000 7696900 6838100 0 0 0 0 0 0 14535000 7696900 6838100 0 0 0 0 0 0 0 0 0 24705 807 25940 131121;131122 131845;131846 131846 2 MPCQLHQVIVAR NSYEMRKALEEAGFKMPCQLHQVIVARFAD GFKMPCQLHQVIVARFADDQLIIDFDNFVR K M P A R F 1 1 0 0 1 2 0 0 1 1 1 0 1 0 1 0 0 0 0 2 0 0 12 0 1450.7537 P17655 P17655 638 649 CAPN2 Calpain-2 catalytic subunit yes yes 3 0.073529 10.052 By MS/MS 1 0.88454 0.78089 NaN 1 Median NaN NaN NaN 0 0 Median 0.88454 0.78089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1323900 713390 610470 0 0 0 1323900 713390 610470 0 0 0 0 0 0 0 0 0 0 0 0 24706 2045 25941 131123 131847 131847 1 MPCQSLQPEPINTPTHTK DHAKAPKSEKGKITKMPCQSLQPEPINTPT QSLQPEPINTPTHTKQQLKASLGKVGVKEE K M P T K Q 0 0 1 0 1 2 1 0 1 1 1 1 1 0 4 1 3 0 0 0 0 0 18 0 2077.9925 P46013 P46013 1005 1022 MKI67 Antigen KI-67 yes yes 3 9.7257E-05 38.996 By MS/MS 1 0.68947 0.73938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68947 0.73938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7228800 4260100 2968700 0 0 0 0 0 0 7228800 4260100 2968700 0 0 0 0 0 0 0 0 0 24707 2335 25942 131124 131848 131848 1 MPCTEDYLSLILNR GKVGTRCCTKPESERMPCTEDYLSLILNRL RMPCTEDYLSLILNRLCVLHEKTPVSEKVT R M P N R L 0 1 1 1 1 0 1 0 0 1 3 0 1 0 1 1 1 0 1 0 0 0 14 0 1723.8273 CON__P02769 CON__P02769 469 482 yes yes 2 1.353E-34 173.64 By MS/MS By MS/MS 1 3 0.047412 0.041134 115.48 3 Median 0.0078356 0.0074284 NaN 1 1 Median 0.061603 0.052484 34.461 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72213000 71797000 416760 13667000 13619000 47907 58546000 58177000 368860 0 0 0 0 0 0 0 0 0 0 0 0 + 24708 746 25943;25944 131125;131126;131127;131128 131849;131850;131851;131852;131853 131850 264 5 MPDLHLK DIHGPEGKLKGPKFKMPDLHLKAPKISMPE KLKGPKFKMPDLHLKAPKISMPEVDLNLKG K M P L K A 0 0 0 1 0 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 7 0 852.45276 Q09666 Q09666 4119 4125 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.070283 35.494 By MS/MS 2 1.0185 0.96658 16.233 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0185 0.96658 16.233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12792000 6575500 6216400 0 0 0 0 0 0 0 0 0 12792000 6575500 6216400 0 0 0 0 0 0 24709 2749 25945 131129;131130 131854 131854 1 MPDMHFK ELECPDAKLKGPKFKMPDMHFKAPKISMPD KLKGPKFKMPDMHFKAPKISMPDVDLHLKG K M P F K A 0 0 0 1 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 0 7 0 904.39353 Q09666 Q09666 1912 1918 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.031889 49.058 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.0422 1.0425 12.965 6 Median 0.84877 0.84296 NaN 1 0 Median 1.0865 0.95373 16.666 2 0 Median 1.0627 1.1437 NaN 1 0 Median 1.0981 1.0425 3.8833 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36609000 18102000 18507000 4687700 2407300 2280400 16698000 8331100 8367100 5002600 2199000 2803600 10221000 5164700 5056200 0 0 0 0 0 0 24710 2749 25946 131131;131132;131133;131134;131135;131136 131855;131856;131857;131858 131857 4 MPDMHVNMPK DIHGPDAKLKGPKLKMPDMHVNMPKISMPE GPKLKMPDMHVNMPKISMPEIDLNLKGSKL K M P P K I 0 0 1 1 0 0 0 0 1 0 0 1 3 0 2 0 0 0 0 1 0 0 10 0 1198.5297 Q09666 Q09666 3283 3292 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0069128 48.283 By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 0.95534 0.92904 6.6465 6 Median 0.90606 0.90439 NaN 1 0 Median 0.94585 0.82495 NaN 1 0 Median 0.90926 0.97763 NaN 1 0 Median 0.98137 0.95436 5.616 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22764000 12692000 10072000 6789400 3901000 2888400 4641000 2674700 1966300 5504200 3131500 2372700 5829700 2985100 2844500 0 0 0 0 0 0 24711 2749 25947 131137;131138;131139;131140;131141;131142 131859;131860;131861;131862;131863;131864;131865 131863 7 MPDSTLPGSR RADDVRPEVTWSFSRMPDSTLPGSRVLARL WSFSRMPDSTLPGSRVLARLDRDSLVHSSP R M P S R V 0 1 0 1 0 0 0 1 0 0 1 0 1 0 2 2 1 0 0 0 0 0 10 0 1059.5019 Q9P2B2 Q9P2B2 320 329 PTGFRN Prostaglandin F2 receptor negative regulator yes yes 2 0.04531 44.318 By MS/MS By MS/MS By matching 1 1 1 0.95013 0.89078 4.2135 2 Median 0.90774 0.91772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99449 0.86463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1459800 710900 748900 787000 389340 397660 0 0 0 0 0 0 672800 321560 351240 0 0 0 0 0 0 24712 4219 25948 131143;131144;131145 131866;131867 131866 2 MPDVDISVPK HVEGLDIKAKAPKVKMPDVDISVPKIEGDL APKVKMPDVDISVPKIEGDLKGPKVQANLG K M P P K I 0 0 0 2 0 0 0 0 0 1 0 1 1 0 2 1 0 0 0 2 0 0 10 0 1099.5583 Q09666 Q09666 5145 5154 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.010552 56.916 By MS/MS By MS/MS By MS/MS 1 1 2 1.0643 1.0256 23.291 4 Median 0.76462 0.76672 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98258 1.0492 NaN 1 0 Median 1.2615 1.165 21.245 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37739000 19328000 18411000 14428000 8507900 5919900 0 0 0 17020000 8534200 8486200 6291000 2286300 4004700 0 0 0 0 0 0 24713 2749 25949 131146;131147;131148;131149 131868;131869;131870;131871 131869 4 MPECYIR REVICTSRDGDKFWRMPECYIRGSTIKYLR RDGDKFWRMPECYIRGSTIKYLRIPDEIID R M P I R G 0 1 0 0 1 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 7 0 967.42556 V9GZ56;Q9Y4Z0;U3KQK1 V9GZ56 56 62 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 2 0.0083653 86.086 By matching By MS/MS 1 1 0.85509 0.78556 14.234 2 Median NaN NaN NaN 0 0 Median 1.0436 0.86874 NaN 1 0 Median 0.70063 0.71034 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8862800 5237500 3625300 0 0 0 975850 512730 463110 7886900 4724700 3162200 0 0 0 0 0 0 0 0 0 24714 4451 25950 131150;131151 131872;131873 131873 2 MPEDGLSDDKKPFK EIERRRAEAAEKRQKMPEDGLSDDKKPFKC KMPEDGLSDDKKPFKCFTPKGSSLKIEERA K M P F K C 0 0 0 3 0 0 1 1 0 0 1 3 1 1 2 1 0 0 0 0 0 0 14 2 1605.7709 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 361 374 CALD1 Caldesmon yes no 3 0.037 18.413 By MS/MS 1 0.54781 0.58112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54781 0.58112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3113200 2060800 1052400 0 0 0 0 0 0 0 0 0 3113200 2060800 1052400 0 0 0 0 0 0 24715 928 25951 131152 131874 131874 1 MPEEEDEAPVLDVR PSNQKPVKSPDNSIKMPEEEDEAPVLDVRY KMPEEEDEAPVLDVRYASAS__________ K M P V R Y 1 1 0 2 0 0 4 0 0 0 1 0 1 0 2 0 0 0 0 2 0 0 14 0 1627.74 Q9UKL0 Q9UKL0 467 480 RCOR1 REST corepressor 1 yes yes 2 2.0404E-23 196.76 By MS/MS 1 0.64846 0.6479 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64846 0.6479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12432000 7240500 5191100 0 0 0 0 0 0 12432000 7240500 5191100 0 0 0 0 0 0 0 0 0 24716 4312 25952 131153 131875;131876 131876 2 MPEFYNR CYSLAPQIKVIAPWRMPEFYNRFKGRNDLM IKVIAPWRMPEFYNRFKGRNDLMEYAKQHG R M P N R F 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 7 0 955.42219 P00966;Q5T6L5;Q5T6L6 P00966 147 153 ASS1 Argininosuccinate synthase yes no 2 0.001726 129.96 By MS/MS By matching By matching By matching 1 2 1 1 1.0834 0.96026 6.7687 5 Median 0.92332 0.883 NaN 1 0 Median 1.0935 0.94902 1.6648 2 0 Median 0.99471 1.0023 NaN 1 0 Median 1.2135 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19945000 9856700 10088000 10808000 5591700 5216000 5039700 2266700 2773000 2157300 1122800 1034500 1940200 875450 1064800 0 0 0 0 0 0 24717 1828 25953 131154;131155;131156;131157;131158 131877;131878 131878 2 MPEMHFK SLEGPEGKLKGPKFKMPEMHFKTPKISMPD KLKGPKFKMPEMHFKTPKISMPDVDLHLKG K M P F K T 0 0 0 0 0 0 1 0 1 0 0 1 2 1 1 0 0 0 0 0 0 0 7 0 918.40918 Q09666 Q09666 1185 1191 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.021799 58.687 By matching By matching By MS/MS By matching By matching 2 3 1 1 1 1.0523 1.008 15.916 8 Median 0.80567 0.78608 18.212 2 0 Median 1.1569 1.0351 9.4063 3 0 Median 0.99857 1.0658 NaN 1 0 Median 0.9724 0.98173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2124 1.039 NaN 1 0 Median 117370000 54862000 62505000 18303000 9329600 8973500 55385000 24721000 30664000 19432000 9138500 10294000 22311000 10924000 11387000 0 0 0 1935800 749420 1186300 24718 2749 25954 131159;131160;131161;131162;131163;131164;131165;131166 131879;131880 131879 2 MPEMHFR SLEGPEGKLKGPKFKMPEMHFRAPKMSLPD KLKGPKFKMPEMHFRAPKMSLPDVDLDLKG K M P F R A 0 1 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 7 0 946.41533 Q09666 Q09666 1057 1063 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.035951 47.067 By MS/MS 1 0.92566 0.80599 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92566 0.80599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2189900 1094400 1095500 0 0 0 0 0 0 0 0 0 2189900 1094400 1095500 0 0 0 0 0 0 24719 2749 25955 131167 131881;131882 131882 2 MPEMNIK SIEEPEGKLKGPKFKMPEMNIKVPKISMPD KLKGPKFKMPEMNIKVPKISMPDVDLHLKG K M P I K V 0 0 1 0 0 0 1 0 0 1 0 1 2 0 1 0 0 0 0 0 0 0 7 0 861.40885 Q09666 Q09666 808 814 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.016483 68.485 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 0.98147 0.96827 24.579 10 Median 0.7674 0.7497 21.454 2 0 Median 1.1882 1.0593 15.652 2 0 Median 0.91062 0.99156 6.6739 2 0 Median 1.1147 1.0055 1.5144 3 0 Median NaN NaN NaN 0 0 Median 0.60376 0.52335 NaN 1 0 Median 202380000 99272000 103100000 35096000 17959000 17137000 64087000 30536000 33552000 60156000 29529000 30627000 42521000 21009000 21511000 0 0 0 515830 239810 276010 24720 2749 25956 131168;131169;131170;131171;131172;131173;131174;131175;131176;131177 131883;131884;131885;131886;131887;131888;131889;131890;131891 131888 9 MPEMSIK NIEGPDAKLKGPKFKMPEMSIKPQKISIPD KLKGPKFKMPEMSIKPQKISIPDVGLHLKG K M P I K P 0 0 0 0 0 0 1 0 0 1 0 1 2 0 1 1 0 0 0 0 0 0 7 0 834.39795 Q09666 Q09666 1441 1447 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.051088 39.646 By matching By matching By MS/MS 1 1 2 1.0752 1.0127 6.8904 4 Median NaN NaN NaN 0 0 Median 1.2927 1.1266 NaN 1 0 Median 0.90795 0.981 NaN 1 0 Median 1.0752 1.0069 5.3059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10526000 4671400 5854700 0 0 0 3378200 1301600 2076600 3934100 1859100 2075100 3213700 1510700 1703000 0 0 0 0 0 0 24721 2749 25957 131178;131179;131180;131181 131892;131893 131892 2 MPFLSISSPK PDVEVQGKVKGSKFKMPFLSISSPKVSMPD GSKFKMPFLSISSPKVSMPDVELNLKSPKV K M P P K V 0 0 0 0 0 0 0 0 0 1 1 1 1 1 2 3 0 0 0 0 0 0 10 0 1105.5842 Q09666 Q09666 3405 3414 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00035303 83.783 By MS/MS By MS/MS By MS/MS 1 1 2 0.96095 0.98295 11.42 4 Median 0.78818 0.79086 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93576 0.99746 NaN 1 0 Median 1.0486 0.98821 2.8262 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59995000 33131000 26864000 24144000 15033000 9111000 0 0 0 29708000 15103000 14605000 6143300 2995000 3148300 0 0 0 0 0 0 24722 2749 25958 131182;131183;131184;131185 131894;131895;131896;131897;131898 131896 4 MPFPVNHGASSEDTLLK LFNNVDGHLYELDGRMPFPVNHGASSEDTL FPVNHGASSEDTLLKDAAKVCREFTEREQG R M P L K D 1 0 1 1 0 0 1 1 1 0 2 1 1 1 2 2 1 0 0 1 0 0 17 0 1841.8982 P09936;D6RE83;D6R956 P09936 179 195 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 5.5164E-12 128.54 By MS/MS By MS/MS By MS/MS By matching By matching 5 4 2 1 2 0.90046 0.80507 18.224 13 Median 0.88176 0.81039 28.344 5 0 Median 0.90688 0.76013 3.7473 4 0 Median 0.90235 0.84682 5.7135 2 0 Median 0.87225 0.72045 NaN 1 0 Median 0.9063 0.92546 NaN 1 0 Median NaN NaN NaN 0 0 Median 996140000 514820000 481320000 881560000 455440000 426120000 72871000 37429000 35442000 37284000 19822000 17461000 1082200 570230 511990 3343800 1559100 1784700 0 0 0 24723 1923 25959;25960 131186;131187;131188;131189;131190;131191;131192;131193;131194;131195;131196;131197;131198;131199 131899;131900;131901;131902;131903;131904;131905;131906;131907;131908;131909;131910;131911;131912;131913;131914;131915;131916;131917;131918;131919;131920;131921;131922;131923;131924 131914 710 26 MPFPVNHGASSEDTLLKDAAK LFNNVDGHLYELDGRMPFPVNHGASSEDTL HGASSEDTLLKDAAKVCREFTEREQGEVRF R M P A K V 3 0 1 2 0 0 1 1 1 0 2 2 1 1 2 2 1 0 0 1 0 0 21 1 2227.0943 P09936;D6RE83 P09936 179 199 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2;3;4 1.1561E-24 141 By MS/MS By MS/MS By matching 3 2 1 0.83959 0.81153 11.597 6 Median 0.83554 0.84597 2.7978 3 0 Median 0.87155 0.79571 2.9598 2 0 Median 0.61877 0.6246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 318450000 166980000 151470000 292250000 153530000 138720000 24081000 12129000 11952000 2115800 1325500 790350 0 0 0 0 0 0 0 0 0 24724 1923 25961 131200;131201;131202;131203;131204;131205 131925;131926;131927;131928;131929;131930;131931;131932;131933;131934;131935;131936 131933 12 MPGAPETAPGDGAGASR ______________________________ GAPETAPGDGAGASRQRKLEALIRDPRSPI K M P S R Q 4 1 0 1 0 0 1 4 0 0 0 0 1 0 3 1 1 0 0 0 0 0 17 0 1540.694 O75116;D6REE7 O75116 10 26 ROCK2 Rho-associated protein kinase 2 yes no 2 2.8438E-05 55.426 By MS/MS By MS/MS 1 1 0.57466 0.52575 0.037359 2 Median 0.52408 0.52589 NaN 1 0 Median 0.63011 0.52562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2704200 1454500 1249700 1157200 614920 542310 1547000 839600 707380 0 0 0 0 0 0 0 0 0 0 0 0 24725 1644 25962 131206;131207 131937;131938;131939 131937 3 MPGGPKPGGGPGLSTPGGHPKPPHR GPKQGPGPGGPKGGKMPGGPKPGGGPGLST PGLSTPGGHPKPPHRGGGEPRGGRQHHPPY K M P H R G 0 1 0 0 0 0 0 8 2 0 1 2 1 0 8 1 1 0 0 0 0 0 25 2 2369.2175 P23246 P23246 212 236 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3;4;5 2.9532E-08 42.254 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 4 0.32003 0.38255 25.426 13 Median NaN NaN NaN 0 0 Median 0.51177 0.54164 12.883 2 0 Median 0.29858 0.3691 6.4293 4 0 Median 0.45924 0.49086 3.3113 3 0 Median 0.27584 0.32026 27.283 4 1 Median NaN NaN NaN 0 0 Median 129680000 96963000 32714000 0 0 0 6095500 4128300 1967200 74012000 56702000 17310000 19681000 13162000 6519100 29888000 22970000 6917400 0 0 0 24726 2107 25963 131208;131209;131210;131211;131212;131213;131214;131215;131216;131217;131218;131219;131220 131940;131941;131942;131943;131944;131945;131946;131947;131948;131949;131950;131951;131952;131953;131954;131955;131956 131951 17 MPGNPYSSNEPGIGPLMR TLEKDPQQEDFLQGRMPGNPYSSNEPGIGP NPYSSNEPGIGPLMRDIKNKICQDCDLVAL R M P M R D 0 1 2 0 0 0 1 3 0 1 1 0 2 0 4 2 0 0 1 0 0 0 18 0 1915.8921 Q5T4S7;X6R960 Q5T4S7 4367 4384 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 1.1978E-06 84.169 By MS/MS By matching 1 2 0.61535 0.58133 51.275 3 Median 0.59188 0.58133 NaN 1 0 Median 0.84967 0.84833 65.62 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10711000 6677400 4033500 9945100 6150700 3794400 765860 526750 239110 0 0 0 0 0 0 0 0 0 0 0 0 24727 3089 25964 131221;131222;131223 131957;131958 131957 2 MPGSVIPPPLVR NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ SARMPGSVIPPPLVRGGQQASSKLGPQASS R M P V R G 0 1 0 0 0 0 0 1 0 1 1 0 1 0 4 1 0 0 0 2 0 0 12 0 1261.7217 Q86YP4 Q86YP4 214 225 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00091321 59.35 By matching By MS/MS By matching By matching 1 1 1 1 0.51595 0.50802 69.029 4 Median NaN NaN NaN 0 0 Median 0.12001 0.13658 NaN 1 0 Median 0.58667 0.60019 NaN 1 0 Median 0.62895 0.53381 NaN 1 0 Median 0.45375 0.48348 NaN 1 0 Median NaN NaN NaN 0 0 Median 11110000 6787100 4322800 0 0 0 1523700 1218200 305510 7529500 4252000 3277600 387010 215940 171070 1669700 1101000 568640 0 0 0 24728 3309 25965 131224;131225;131226;131227 131959;131960 131959 2 MPHGYDTQVGER YAVAKLAGLHDAILRMPHGYDTQVGERGLK ILRMPHGYDTQVGERGLKLSGGEKQRVAIA R M P E R G 0 1 0 1 0 1 1 2 1 0 0 0 1 0 1 0 1 0 1 1 0 0 12 0 1388.6143 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;A0A087WW65 O75027 594 605 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2;3 0.00039904 59.426 By MS/MS By MS/MS 2 5 1.2888 1.0588 27.178 6 Median 0.83961 0.84065 1.1293 2 0 Median 1.5229 1.2752 21.445 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36194000 16294000 19900000 7661600 4886400 2775200 28533000 11408000 17125000 0 0 0 0 0 0 0 0 0 0 0 0 24729 1642 25966 131228;131229;131230;131231;131232;131233;131234 131961;131962;131963;131964;131965;131966;131967;131968;131969;131970 131965 10 MPISLQQIR LPSKKKYPDYYQQIKMPISLQQIRTKLKNQ YYQQIKMPISLQQIRTKLKNQEYETLDHLE K M P I R T 0 1 0 0 0 2 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 0 9 0 1084.6063 Q86U86;E7EVG2;H0Y5B5 Q86U86 426 434 PBRM1 Protein polybromo-1 yes no 2 0.00031674 137.18 By matching By MS/MS By matching 1 2 1 0.76919 0.81405 38.908 4 Median 0.31557 0.39802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76919 0.83838 14.368 2 0 Median 1.0112 0.87496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45072000 25473000 19599000 1145300 916070 229220 0 0 0 43516000 24406000 19111000 409850 150620 259240 0 0 0 0 0 0 24730 3273 25967;25968 131235;131236;131237;131238 131971;131972;131973 131973 1697 3 MPITADLVAPILR QDKLRRHHVPQQCNKMPITADLVAPILRFL NKMPITADLVAPILRFLTEVGNSHIMKDWL K M P L R F 2 1 0 1 0 0 0 0 0 2 2 0 1 0 2 0 1 0 0 1 0 0 13 0 1408.8112 A0A3B3IUB9;Q9NR09 Q9NR09 3676 3688 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.0005601 77.662 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24731 4073;445 25969 131239 131974 131974 1 MPLATSTDHGHNLQTVQLLIK FNRDVEDEILWVGERMPLATSTDHGHNLQT TDHGHNLQTVQLLIKKNQTLQKEIQGHQPR R M P I K K 1 0 1 1 0 2 0 1 2 1 4 1 1 0 1 1 3 0 0 1 0 0 21 0 2316.226 Q01082;A0A087WUZ3 Q01082 1505 1525 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 1.6099E-18 87.654 By MS/MS By MS/MS By matching By matching By matching 4 3 3 1 1 0.92341 0.85712 23.042 12 Median 1.1286 1.0883 23.841 4 2 Median NaN NaN NaN 0 0 Median 0.78081 0.85971 8.8567 3 0 Median 0.92898 0.84526 3.0856 3 0 Median 0.80921 0.85027 NaN 1 0 Median 0.91788 0.77705 NaN 1 0 Median 194850000 106590000 88267000 47373000 22638000 24735000 0 0 0 139780000 79685000 60099000 3662800 2068000 1594800 3810000 2077700 1732300 225060 119200 105860 24732 2681 25970;25971 131240;131241;131242;131243;131244;131245;131246;131247;131248;131249;131250;131251 131975;131976;131977;131978;131979;131980;131981 131975 1376 7 MPLATSTDHGHNLQTVQLLIKK FNRDVEDEILWVGERMPLATSTDHGHNLQT DHGHNLQTVQLLIKKNQTLQKEIQGHQPRI R M P K K N 1 0 1 1 0 2 0 1 2 1 4 2 1 0 1 1 3 0 0 1 0 0 22 1 2444.321 Q01082;A0A087WUZ3 Q01082 1505 1526 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 4 4.5589E-07 43.955 By MS/MS 1 0.78936 0.91524 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78936 0.91524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18356000 9476100 8879600 0 0 0 0 0 0 18356000 9476100 8879600 0 0 0 0 0 0 0 0 0 24733 2681 25972 131252 131982;131983 131982 2 MPLDDLDR PLVTELDPDAPIRQKMPLDDLDREDEVRLL DAPIRQKMPLDDLDREDEVRLLKYLFTLIR K M P D R E 0 1 0 3 0 0 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 8 0 973.45388 P57740 P57740 333 340 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.027608 41.029 By MS/MS 1 0.97445 1.046 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97445 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2864100 1223000 1641100 0 0 0 0 0 0 2864100 1223000 1641100 0 0 0 0 0 0 0 0 0 24734 2518 25973 131253 131984 131984 1 MPLDDLDREDEVR PLVTELDPDAPIRQKMPLDDLDREDEVRLL QKMPLDDLDREDEVRLLKYLFTLIRAGMTE K M P V R L 0 2 0 4 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 13 1 1601.7355 P57740 P57740 333 345 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 2.7224E-07 102.06 By MS/MS By MS/MS By matching 2 2 1 0.94836 1.0878 14.03 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91224 1.0541 5.4923 2 0 Median 1.139 1.115 3.4978 2 0 Median NaN NaN NaN 0 0 Median 0.88969 0.80427 NaN 1 0 Median 23817000 11633000 12183000 0 0 0 0 0 0 21435000 10513000 10922000 2156400 1010900 1145500 0 0 0 224870 109280 115590 24735 2518 25974 131254;131255;131256;131257;131258 131985;131986;131987;131988;131989 131985 5 MPLFEHYTR KLFEASIETGDRVWRMPLFEHYTRQVVDCQ GDRVWRMPLFEHYTRQVVDCQLADVNNIGK R M P T R Q 0 1 0 0 0 0 1 0 1 0 1 0 1 1 1 0 1 0 1 0 0 0 9 0 1192.5699 P28838 P28838 432 440 LAP3 Cytosol aminopeptidase yes yes 2;3 0.0032081 66.692 By MS/MS 2 0.83775 0.79848 NaN 1 Median 0.83775 0.79848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16690000 7445600 9244000 16690000 7445600 9244000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24736 2167 25975 131259;131260 131990;131991 131990 2 MPLIGLGTWK ______________________________ HTGQKMPLIGLGTWKSEPGQVKAAVKYALS K M P W K S 0 0 0 0 0 0 0 2 0 1 2 1 1 0 1 0 1 1 0 0 0 0 10 0 1114.6209 P14550;V9GYG2;V9GYP9;Q5T621 P14550 14 23 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes no 2 0.00033784 85.731 By MS/MS By matching 4 3 0.81281 0.73641 32.405 7 Median 0.89101 0.80307 19.358 4 0 Linear 1.0325 0.8681 25.432 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71142000 38699000 32443000 60456000 33539000 26917000 10687000 5159700 5526900 0 0 0 0 0 0 0 0 0 0 0 0 24737 2004 25976 131261;131262;131263;131264;131265;131266;131267 131992;131993;131994;131995;131996 131996 5 MPLPAPSLSHQPPPAPR PSMFGGERRTYPEERMPLPAPSLSHQPPPA LPAPSLSHQPPPAPRVEKKPESKNVDDILK R M P P R V 2 1 0 0 0 1 0 0 1 0 2 0 1 0 7 2 0 0 0 0 0 0 17 0 1791.9454 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1793 1809 YLPM1 YLP motif-containing protein 1 yes no 3 5.9141E-06 62.861 By MS/MS By MS/MS 2 1 0.35415 0.41093 17.191 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38926 0.43791 8.991 2 1 Median NaN NaN NaN 0 0 Median 0.32018 0.33208 NaN 1 0 Median NaN NaN NaN 0 0 Median 41414000 28489000 12925000 0 0 0 0 0 0 34439000 23462000 10977000 0 0 0 6975000 5027200 1947900 0 0 0 24738 2395 25977;25978 131268;131269;131270 131997;131998 131998 1106 2 MPMFIVNTNVPR ______________________________ ______________________________ - M P P R A 0 1 2 0 0 0 0 0 0 1 0 0 2 1 2 0 1 0 0 2 0 0 12 0 1417.721 P14174 P14174 1 12 MIF Macrophage migration inhibitory factor yes yes 2 0.00029876 82.749 By MS/MS By MS/MS By matching 1 1 1 0.82809 0.80392 16.564 3 Median 0.82809 0.8055 NaN 1 0 Median 0.95158 0.80392 NaN 1 0 Median 0.59486 0.60401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11375000 6035900 5339400 8708400 4555800 4152600 1220200 610050 610130 1446700 870090 576630 0 0 0 0 0 0 0 0 0 24739 2001 25979 131271;131272;131273 131999;132000;132001;132002;132003 132001 5 MPNGMYDGSALIR NHPYLFPVAAMEAPKMPNGMYDGSALIRAS PKMPNGMYDGSALIRASGKLLLLQKMLKNL K M P I R A 1 1 1 1 0 0 0 2 0 1 1 0 2 0 1 1 0 0 1 0 0 0 13 0 1423.6588 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 1035 1047 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 7.4802E-07 131.82 By MS/MS By MS/MS By MS/MS By matching 4 1 3 2 0.94835 1.0083 22.666 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92225 1.0083 5.8211 4 0 Median 1.1391 1.0021 NaN 1 0 Median 1.4107 1.5185 32.243 3 0 Median 1.0504 0.87484 23.338 2 0 Median 60663000 29354000 31309000 0 0 0 0 0 0 41297000 20296000 21001000 1250000 606640 643330 17402000 8138500 9263400 715060 313360 401700 24740 246 25980;25981 131274;131275;131276;131277;131278;131279;131280;131281;131282;131283 132004;132005;132006;132007;132008;132009;132010;132011;132012 132007 105;106 9 MPNVPNTQPAIMKPTEEHPAYTQIAK NPFSDSRTPPPGGVKMPNVPNTQPAIMKPT MKPTEEHPAYTQIAKEHALAQAELLKRQEE K M P A K E 3 0 2 0 0 2 2 0 1 2 0 2 2 0 5 0 3 0 1 1 0 0 26 1 2905.4466 O15126;A0A087WXB0;A0A087WZA6;A0A087WTX8 O15126 53 78 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 4 4.8739E-05 28.951 By MS/MS By matching 3 1 0.46201 0.44487 30.73 4 Median 0.50672 0.53902 35.498 3 1 Plateau 0.50718 0.48341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46087000 30162000 15925000 40043000 26348000 13696000 6044100 3814600 2229500 0 0 0 0 0 0 0 0 0 0 0 0 24741 1522 25982 131284;131285;131286;131287 132013;132014 132014 2 MPPYTVVYFPVR ______________________________ ______________________________ - M P V R G 0 1 0 0 0 0 0 0 0 0 0 0 1 1 3 0 1 0 2 3 0 0 12 0 1467.7584 P09211;A8MX94;A0A2R8Y5E5 P09211 1 12 GSTP1 Glutathione S-transferase P yes no 2 3.7171E-06 128.36 By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 0.70695 0.63668 28.62 12 Median 0.82847 0.78806 27.118 4 0 Median 0.60398 0.50937 10.362 5 0 Median 0.77124 0.73875 9.4091 2 1 Median NaN NaN NaN 0 0 Median 1.0699 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median 135100000 75518000 59581000 115110000 63448000 51664000 8949700 5497300 3452400 9672200 5901500 3770800 0 0 0 1365000 670670 694290 0 0 0 24742 1912 25983;25984 131288;131289;131290;131291;131292;131293;131294;131295;131296;131297;131298;131299 132015;132016;132017;132018;132019;132020;132021;132022;132023;132024;132025;132026;132027;132028;132029;132030;132031;132032 132020 692 18 MPQMIVNWQQQQR KRREREQHIAECMAKMPQMIVNWQQQQREN AKMPQMIVNWQQQQRENWEKAQADKERRAR K M P Q R E 0 1 1 0 0 5 0 0 0 1 0 0 2 0 1 0 0 1 0 1 0 0 13 0 1685.813 Q8TAE8 Q8TAE8 128 140 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 7.914E-07 102.61 By MS/MS By matching By matching 1 1 1 0.84744 0.80162 15.878 3 Median 0.84744 0.80162 NaN 1 0 Median 1.1483 0.97878 NaN 1 0 Median 0.76265 0.71524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8917800 4641800 4276000 7072400 3667300 3405100 258150 124900 133250 1587200 849540 737680 0 0 0 0 0 0 0 0 0 24743 3452 25985 131300;131301;131302 132033;132034 132033 2 MPSGEFAR EQLGIPEQEYSCVVKMPSGEFARICRDLSH EYSCVVKMPSGEFARICRDLSHIGDAVVIS K M P A R I 1 1 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 8 0 893.40654 P12004 P12004 139 146 PCNA Proliferating cell nuclear antigen yes yes 2 0.0025526 129.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 2 1 1 0.91551 0.85027 9.5291 14 Median 0.90129 0.84177 10.964 3 0 Median 1.0189 0.86331 10.919 4 0 Median 0.84151 0.8181 8.753 3 0 Median 1.0716 0.89423 1.8991 2 0 Median 0.83479 0.83773 NaN 1 0 Median 0.89416 0.72585 NaN 1 0 Median 174700000 86186000 88511000 54343000 28154000 26189000 54197000 25106000 29090000 24623000 12400000 12222000 31909000 15314000 16595000 8401000 4542100 3858900 1225100 670250 554810 24744 1974 25986;25987 131303;131304;131305;131306;131307;131308;131309;131310;131311;131312;131313;131314;131315;131316 132035;132036;132037;132038;132039;132040;132041;132042;132043;132044;132045;132046;132047;132048 132041 751 14 MPSHQGAEQQQQQHHVFISQVVTEK SFSFGGKLVTFENVRMPSHQGAEQQQQQHH QQQHHVFISQVVTEKEFLSRSDQLQQAVQS R M P E K E 1 0 0 0 0 7 2 1 3 1 0 1 1 1 1 2 1 0 0 3 0 0 25 0 2900.3988 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3;H0Y8V7 D6REX3 412 436 SEC31A Protein transport protein Sec31A yes no 4 0.006628 23.566 By MS/MS By MS/MS 1 1 1.1665 0.99858 16.562 2 Median NaN NaN NaN 0 0 Median 1.3072 1.1226 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.041 0.88822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6701900 2170800 4531100 0 0 0 4244600 1383800 2860800 0 0 0 2457400 787010 1670300 0 0 0 0 0 0 24745 823 25988 131317;131318 132049;132050 132049 2 MPSLEISAPK DFEGPDAKLSGPSLKMPSLEISAPKVTAPD GPSLKMPSLEISAPKVTAPDVDLHLKAPKI K M P P K V 1 0 0 0 0 0 1 0 0 1 1 1 1 0 2 2 0 0 0 0 0 0 10 0 1071.5634 Q09666 Q09666 4906 4915 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00033682 94.85 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 1 0.83857 0.85442 45.426 9 Median 1.2594 1.2393 82.762 2 1 Median NaN NaN NaN 0 0 Median 0.51418 0.58051 60.916 2 0 Median 0.94488 0.86951 7.0434 4 0 Median 0.75 0.7896 NaN 1 0 Median NaN NaN NaN 0 0 Median 97152000 46415000 50737000 37100000 14719000 22381000 0 0 0 43575000 23137000 20438000 13262000 6947600 6314500 3215100 1611400 1603700 0 0 0 24746 2749 25989;25990 131319;131320;131321;131322;131323;131324;131325;131326;131327 132051;132052;132053;132054;132055;132056;132057;132058;132059 132053 1464 9 MPSLPSYK PPQEDAPSVDIANIRMPSLPSYKVGDKIAT VDIANIRMPSLPSYKVGDKIATRKAYGQAL R M P Y K V 0 0 0 0 0 0 0 0 0 0 1 1 1 0 2 2 0 0 1 0 0 0 8 0 921.46299 P29401;A0A0B4J1R6;E9PFF2 P29401 303 310 TKT Transketolase yes no 2 0.0073862 67.277 By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 0.81393 0.73985 13.69 6 Median 0.77471 0.7155 NaN 1 0 Median 0.85144 0.70955 NaN 1 0 Median 0.77944 0.87515 0.53183 2 0 Median 0.89232 0.76503 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77808 0.61333 NaN 1 0 Median 123910000 66900000 57007000 78702000 42469000 36233000 29376000 14957000 14419000 14040000 8696000 5344300 1178600 572370 606200 0 0 0 610600 206120 404480 24747 2173 25991 131328;131329;131330;131331;131332;131333 132060;132061;132062 132060 3 MPSMNIQTHK NLEAPEGKLKGPKFKMPSMNIQTHKISMPD GPKFKMPSMNIQTHKISMPDVGLNLKAPKL K M P H K I 0 0 1 0 0 1 0 0 1 1 0 1 2 0 1 1 1 0 0 0 0 0 10 0 1185.5634 Q09666 Q09666 1569 1578 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.063904 58.083 By MS/MS By matching By matching 2 1 1 1.0961 1.0433 20.585 4 Median 1.0045 0.96496 27.908 2 0 Median NaN NaN NaN 0 0 Median 0.95024 0.92605 NaN 1 0 Median 1.3812 1.2262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24949000 11840000 13109000 13118000 6343300 6774800 0 0 0 10727000 5045200 5682000 1103500 451140 652370 0 0 0 0 0 0 24748 2749 25992 131334;131335;131336;131337 132063 132063 0 MPTFSTPGAK EAHGPEWNLKMPKMKMPTFSTPGAKGEGPD MPKMKMPTFSTPGAKGEGPDVHMTLPKGDI K M P A K G 1 0 0 0 0 0 0 1 0 0 0 1 1 1 2 1 2 0 0 0 0 0 10 0 1035.5059 Q09666 Q09666 633 642 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00039696 78.149 By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 0.85196 0.83153 44.209 6 Median 0.28273 0.28329 NaN 1 0 Median 0.74745 0.6557 NaN 1 0 Median 0.82546 0.88263 NaN 1 0 Median 0.91569 0.86348 0.1344 2 0 Median NaN NaN NaN 0 0 Median 0.93519 0.80153 NaN 1 0 Median 39040000 22792000 16248000 12105000 7984600 4120700 7373600 3939000 3434600 11017000 6347500 4669900 7254500 3925100 3329400 0 0 0 1289100 595920 693180 24749 2749 25993 131338;131339;131340;131341;131342;131343 132064;132065;132066;132067;132068;132069 132068 6 MPTGEIEIK SGTVISRPAGQENPKMPTGEIEIKVKTAEL GQENPKMPTGEIEIKVKTAELLNACKKLPF K M P I K V 0 0 0 0 0 0 2 1 0 2 0 1 1 0 1 0 1 0 0 0 0 0 9 0 1016.5212 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 134 142 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0024827 71.692 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.4689 1.248 30.317 5 Median 0.85238 0.80005 NaN 1 0 Median 1.5674 1.325 1.5889 2 2 Median 0.70571 0.70776 NaN 1 0 Median 1.4689 1.248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47644000 22941000 24702000 11811000 6186300 5624500 12126000 4819300 7306500 18111000 9861700 8249000 5596600 2074100 3522500 0 0 0 0 0 0 24750 3171 25994 131344;131345;131346;131347;131348 132070;132071;132072;132073;132074;132075;132076;132077 132076 8 MPTKEDEEEDEPVVIK TVPKSPAFALKNRIRMPTKEDEEEDEPVVI PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI R M P I K A 0 0 0 2 0 0 5 0 0 1 0 2 1 0 2 0 1 0 0 2 0 0 16 1 1886.8819 Q9ULW0 Q9ULW0 497 512 TPX2 Targeting protein for Xklp2 yes yes 3 0.0013401 34.612 By MS/MS By matching By matching 1 2 1 0.68241 0.72599 25.577 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75426 0.86078 NaN 1 0 Median 0.63826 0.61481 34.682 2 0 Median 0.6174 0.67082 NaN 1 0 Median NaN NaN NaN 0 0 Median 22116000 11849000 10267000 0 0 0 0 0 0 13549000 6659400 6889800 4591100 2781600 1809500 3975500 2407500 1568000 0 0 0 24751 4330 25995 131349;131350;131351;131352 132078;132079 132079 2 MPTTQETDGFQVK KELYGPDNHLVEWHRMPTTQETDGFQVKRP HRMPTTQETDGFQVKRPGDLNVKCTLLLML R M P V K R 0 0 0 1 0 2 1 1 0 0 0 1 1 1 1 0 3 0 0 1 0 0 13 0 1480.6868 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 202 214 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 3.2798E-10 176.48 By MS/MS By MS/MS 2 3 0.83087 0.72698 16.645 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66744 0.65213 15.368 2 0 Median 0.94317 0.84273 11.886 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42958000 24844000 18114000 0 0 0 0 0 0 33231000 19621000 13610000 9727500 5223900 4503600 0 0 0 0 0 0 24752 655 25996 131353;131354;131355;131356;131357 132080;132081;132082;132083 132081 4 MPVALLR DQASWTLEELSKAVKMPVALLRRRMSVWLQ EELSKAVKMPVALLRRRMSVWLQQGVLREE K M P L R R 1 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 7 0 798.47858 Q9UJX6 Q9UJX6 687 693 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2 0.028184 66.994 By MS/MS 1 0.90906 0.97089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90906 0.97089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2124100 1048600 1075400 0 0 0 0 0 0 2124100 1048600 1075400 0 0 0 0 0 0 0 0 0 24753 4303 25997 131358 132084 132084 1 MPVGDFFEER VVHSVRREHFSFSPRMPVGDFFEERDTPEG SFSPRMPVGDFFEERDTPEGLQWVQLSAEE R M P E R D 0 1 0 1 0 0 2 1 0 0 0 0 1 2 1 0 0 0 0 1 0 0 10 0 1225.5438 J3KPG5;F8VU39;Q9UIF9;H0YII3 J3KPG5 586 595 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.050101 28.013 By matching By MS/MS 1 1 0.79881 0.86302 5.9749 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74463 0.82732 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85692 0.90027 NaN 1 0 Median NaN NaN NaN 0 0 Median 5859600 3198900 2660700 0 0 0 0 0 0 2496600 1335400 1161200 0 0 0 3363000 1863500 1499500 0 0 0 24754 1065 25998 131359;131360 132085 132085 1 MPVGSPLLR VKPIYKKGPRWNRVRMPVGSPLLRDNVCYS RWNRVRMPVGSPLLRDNVCYSR________ R M P L R D 0 1 0 0 0 0 0 1 0 0 2 0 1 0 2 1 0 0 0 1 0 0 9 0 968.54772 Q5QPA5;Q9NVS2 Q5QPA5 248 256 MRPS18A 28S ribosomal protein S18a, mitochondrial yes no 2 0.0011181 85.064 By MS/MS By MS/MS By MS/MS 1 1 1 1.0254 0.97646 11.528 3 Median 0.8655 0.81712 NaN 1 0 Median 1.2192 1.014 NaN 1 0 Median 1.0254 0.97646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9916700 5374300 4542400 5469600 3183300 2286300 1125400 492480 632960 3321700 1698500 1623200 0 0 0 0 0 0 0 0 0 24755 3068 25999 131361;131362;131363 132086;132087;132088;132089;132090;132091 132087 6 MPVSIDLENSQK VAPVIAPKITSVISRMPVSIDLENSQKITL ISRMPVSIDLENSQKITLAKPAPQTLTGLV R M P Q K I 0 0 1 1 0 1 1 0 0 1 1 1 1 0 1 2 0 0 0 1 0 0 12 0 1359.6704 Q96T58 Q96T58 2625 2636 SPEN Msx2-interacting protein yes yes 2 5.4737E-06 143.89 By MS/MS By matching By MS/MS 1 3 1 0.92806 0.93693 20.193 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77812 0.83201 NaN 1 0 Median 1.0306 0.93693 26.851 3 0 Median 0.92806 0.97172 NaN 1 0 Median NaN NaN NaN 0 0 Median 18980000 10752000 8227200 0 0 0 0 0 0 11018000 6152800 4865400 1604500 823160 781290 6356900 3776400 2580500 0 0 0 24756 3741 26000 131364;131365;131366;131367;131368 132092;132093;132094 132093 3 MPVWYIMDEFGSR FNQTYQLAHGTAEEKMPVWYIMDEFGSRIQ EKMPVWYIMDEFGSRIQHADVPSFATAPFF K M P S R I 0 1 0 1 0 0 1 1 0 1 0 0 2 1 1 1 0 1 1 1 0 0 13 0 1629.732 Q14166 Q14166 188 200 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.00050492 71.889 By MS/MS By matching 2 2 0.99871 0.96265 7.9893 4 Median 0.98258 0.96265 0.96964 2 0 Median 1.0971 0.96983 13.784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9482700 4570600 4912200 8382700 4093100 4289700 1100000 477520 622470 0 0 0 0 0 0 0 0 0 0 0 0 24757 2861 26001 131369;131370;131371;131372 132095;132096;132097;132098 132096 4 MPYEPNKDPFGGMR APYQQGMSMPDVMGRMPYEPNKDPFGGMRK RMPYEPNKDPFGGMRKVPGSSEPFMTQGQM R M P M R K 0 1 1 1 0 0 1 2 0 0 0 1 2 1 3 0 0 0 1 0 0 0 14 1 1637.733 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63 A0A3F2YNW7 1356 1369 ARID1B AT-rich interactive domain-containing protein 1B yes no 3 0.00094974 40.025 By MS/MS By matching 1 1 1.0934 1.2756 76.66 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61866 0.74182 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9325 2.1935 NaN 1 0 Median NaN NaN NaN 0 0 Median 8998600 5006500 3992100 0 0 0 0 0 0 6733500 4133800 2599600 0 0 0 2265100 872620 1392500 0 0 0 24758 449 26002 131373;131374 132099 132099 1 MQAGEEVTELR MQKELLDTELDLYKKMQAGEEVTELRRKYT LYKKMQAGEEVTELRRKYTELQLEAAKRGI K M Q L R R 1 1 0 0 0 1 3 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1261.5973 Q5T8P6 Q5T8P6 825 835 RBM26 RNA-binding protein 26 no no 2 0.00011265 125.48 By matching By matching By MS/MS By MS/MS 1 1 1 3 1.0996 0.9845 31.194 6 Median 1.0774 1.0496 NaN 1 0 Median 1.1223 0.95943 NaN 1 0 Median 0.73141 0.80415 NaN 1 0 Median 1.2104 1.0102 44.995 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27847000 14213000 13634000 3070600 1390400 1680200 2731900 1120300 1611700 14645000 8562900 6082100 7399800 3139900 4259900 0 0 0 0 0 0 24759 3097 26003 131375;131376;131377;131378;131379;131380 132100;132101 132100 2 MQAGEEVTELRR MQKELLDTELDLYKKMQAGEEVTELRRKYT YKKMQAGEEVTELRRKYTELQLEAAKRGIL K M Q R R K 1 2 0 0 0 1 3 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 12 1 1417.6984 Q5T8P6 Q5T8P6 825 836 RBM26 RNA-binding protein 26 no no 3 7.7963E-07 110.66 By matching By MS/MS By MS/MS 1 1 2 2.0874 2.0279 69.414 4 Median NaN NaN NaN 0 0 Median 3.6154 3.4856 NaN 1 0 Median 0.89207 1.0849 NaN 1 0 Median 2.3462 2.178 86.694 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26202000 10946000 15256000 0 0 0 4184900 1206200 2978700 14819000 7882300 6937100 7197900 1858000 5339900 0 0 0 0 0 0 24760 3097 26004 131381;131382;131383;131384 132102;132103;132104;132105 132102 4 MQAGKPILYSYFR ______________________________ ______________________________ - M Q F R S 1 1 0 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 2 0 0 0 13 1 1572.8123 A0A0A0MR33;G3V267;G3V5T0;A0A0C4DFM0;O43708 A0A0A0MR33 1 13 GSTZ1 Maleylacetoacetate isomerase yes no 2 0.00027393 69.979 By MS/MS By matching 1 1 0.98689 1.0667 19.313 2 Median 0.89108 0.9305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.093 1.2227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15340000 7356100 7983500 13613000 6686600 6926100 0 0 0 1727000 669510 1057500 0 0 0 0 0 0 0 0 0 24761 153 26005 131385;131386 132106;132107 132107 2 MQAHELFR ______________________________ ______________________________ - M Q F R Y 1 1 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1030.5018 E7EPM6;P33121;D6RER0;D6RG07 E7EPM6 1 8 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 2 0.001437 100.45 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24762 871 26006 131387 132108 132108 1 MQAHIQDLEEQLDEEEGAR EEEERNQILQNEKKKMQAHIQDLEEQLDEE IQDLEEQLDEEEGARQKLQLEKVTAEAKIK K M Q A R Q 2 1 0 2 0 3 5 1 1 1 2 0 1 0 0 0 0 0 0 0 0 0 19 0 2240.0015 P35580 P35580 948 966 MYH10 Myosin-10 yes yes 2;3 5.9182E-19 155.98 By MS/MS By MS/MS By MS/MS 2 2 2 0.9662 0.88773 23.593 6 Median 0.9662 0.90951 2.5752 2 0 Median 1.103 0.96085 12.047 2 0 Median 0.57577 0.63379 24.234 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54450000 28093000 26356000 34755000 16792000 17963000 7284400 3130800 4153600 12410000 8170400 4239800 0 0 0 0 0 0 0 0 0 24763 2245 26007;26008 131388;131389;131390;131391;131392;131393 132109;132110;132111;132112;132113;132114;132115 132111 1005 7 MQALTYLQR QGIACLCCDARRQVRMQALTYLQRALLVHD ARRQVRMQALTYLQRALLVHDLQKLDALEW R M Q Q R A 1 1 0 0 0 2 0 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 9 0 1122.5856 Q92538 Q92538 1562 1570 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.0078737 50.607 By MS/MS 1 1.3155 1.1083 NaN 1 Median NaN NaN NaN 0 0 Median 1.3155 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2106900 835220 1271600 0 0 0 2106900 835220 1271600 0 0 0 0 0 0 0 0 0 0 0 0 24764 3533 26009 131394 132116 132116 1 MQAQAMLEGSPQLNMVGLFR CGQLASYPLALVRTRMQAQAMLEGSPQLNM MLEGSPQLNMVGLFRRIISKEGIPGLYRGI R M Q F R R 2 1 1 0 0 3 1 2 0 0 3 0 3 1 1 1 0 0 0 1 0 0 20 0 2220.0853 Q6NUK1 Q6NUK1 413 432 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 3 1.4029E-05 39.237 By MS/MS 1 1.4628 1.2762 NaN 1 Median NaN NaN NaN 0 0 Median 1.4628 1.2762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 790880 310070 480810 0 0 0 790880 310070 480810 0 0 0 0 0 0 0 0 0 0 0 0 24765 3143 26010 131395 132117 132117 1 MQAQMQMQMQGGDGDGGALGHHV EKEAELRRMQEMIARMQAQMQMQMQGGDGD MQGGDGDGGALGHHV_______________ R M Q H V - 2 0 0 2 0 5 0 6 2 0 1 0 4 0 0 0 0 0 0 1 0 0 23 0 2382.9926 Q15019;B5MCX3;H7C2Y0;H7C1T1 Q15019 339 361 SEPT2 Septin-2 yes no 2;3 3.3248E-104 191.26 By MS/MS By MS/MS 9 10 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 799270000 0 0 0 0 0 0 0 0 656520000 0 0 142750000 0 0 0 0 0 0 0 0 24766 2914 26011;26012;26013;26014 131396;131397;131398;131399;131400;131401;131402;131403;131404;131405;131406;131407;131408;131409;131410;131411;131412;131413;131414 132118;132119;132120;132121;132122;132123;132124;132125;132126;132127;132128;132129;132130;132131;132132;132133;132134;132135;132136;132137;132138;132139;132140;132141;132142;132143;132144;132145;132146;132147;132148;132149;132150;132151;132152 132144 1595;1596;1597;1598 35 MQAQWER ESHSRVRERSEREQRMQAQWEREERERLEI ERSEREQRMQAQWEREERERLEIARERLAF R M Q E R E 1 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 7 0 947.42834 Q15424;K7EII0 Q15424 633 639 SAFB Scaffold attachment factor B1 yes no 2 0.0060397 94.662 By matching By MS/MS By MS/MS 1 2 1 1.2316 1.1424 9.7258 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4892 1.2715 NaN 1 0 Median 1.062 1.1183 11.241 2 0 Median 1.3243 1.0778 NaN 1 0 Median 7549600 3767500 3782100 0 0 0 0 0 0 0 0 0 915810 414470 501340 5562000 2922600 2639300 1071900 430390 641470 24767 2951 26015 131415;131416;131417;131418 132153;132154;132155;132156;132157 132155 5 MQAQWEREER ESHSRVRERSEREQRMQAQWEREERERLEI EREQRMQAQWEREERERLEIARERLAFQRQ R M Q E R E 1 2 0 0 0 2 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 10 1 1361.6146 Q15424;K7EII0 Q15424 633 642 SAFB Scaffold attachment factor B1 yes no 3 0.00077305 60.342 By MS/MS By MS/MS By MS/MS 1 3 2 1.0722 1.1148 30.937 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4176 1.7241 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1476 1.2469 23.723 3 0 Median 0.95855 0.85694 7.804 2 0 Median 26074000 11434000 14640000 0 0 0 0 0 0 2435500 773170 1662300 0 0 0 19255000 8519300 10736000 4383900 2142000 2242000 24768 2951 26016 131419;131420;131421;131422;131423;131424 132158;132159;132160;132161;132162;132163 132160 6 MQASIEK KTPKGPSSVEDIKAKMQASIEKGGSLPKVE SVEDIKAKMQASIEKGGSLPKVEAKFINYV K M Q E K G 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 7 0 805.40039 P06748 P06748 251 257 NPM1 Nucleophosmin yes yes 2 0.002489 116.54 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 5 2 2 1.2688 1.0971 6.0022 15 Median 1.2404 1.205 NaN 1 0 Median 1.3027 1.105 4.7053 2 0 Median 1.118 1.0759 5.2995 3 0 Median 1.3031 1.0664 4.5762 5 0 Median 1.1081 1.1271 2.6221 2 0 Median 1.2028 1.0184 10.522 2 0 Median 33259000 14858000 18401000 2983200 1316800 1666400 5088800 2132700 2956100 11688000 5481200 6206900 8645100 3757600 4887600 4054100 1840700 2213400 799820 328850 470970 24769 1877 26017 131425;131426;131427;131428;131429;131430;131431;131432;131433;131434;131435;131436;131437;131438;131439 132164;132165;132166;132167;132168;132169;132170;132171;132172;132173;132174;132175;132176;132177 132170 14 MQAVQEATR LAQQRALAEKMLKEKMQAVQEATRLKAEAE KMLKEKMQAVQEATRLKAEAELLQQQKELA K M Q T R L 2 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 9 0 1032.5022 Q15149 Q15149 2453 2461 PLEC Plectin yes yes 2 0.0027536 69.825 By matching By MS/MS By MS/MS 1 1 1 1.1879 1.1282 8.2592 3 Median 1.1453 1.1282 NaN 1 0 Median 1.1879 1.0119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4208 1.1898 NaN 1 0 Median 2548100 1140300 1407800 430760 178440 252320 1124600 575250 549340 0 0 0 0 0 0 0 0 0 992730 386570 606160 24770 2933 26018 131440;131441;131442 132178;132179 132179 2 MQAYQYEQISADPDKPLADGIR QLRIRKENLTRLFEKMQAYQYEQISADPDK QISADPDKPLADGIRALDTTDMERLKDVQS K M Q I R A 3 1 0 3 0 3 1 1 0 2 1 1 1 0 2 1 0 0 2 0 0 0 22 1 2508.1955 Q7KZ85 Q7KZ85 420 441 SUPT6H Transcription elongation factor SPT6 yes yes 3 6.4347E-08 60.032 By MS/MS 1 0.63183 0.75736 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63183 0.75736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11574000 5871600 5702800 0 0 0 0 0 0 11574000 5871600 5702800 0 0 0 0 0 0 0 0 0 24771 3213 26019 131443 132180 132180 1 MQDAENVAVPEAAEER ______________________________ QDAENVAVPEAAEERAEPGQQQPAAEPPPA - M Q E R A 4 1 1 1 0 1 4 0 0 0 0 0 1 0 1 0 0 0 0 2 0 0 16 0 1757.789 P55884;C9JZG1 P55884 1 16 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 1.0399E-09 116.84 By MS/MS By matching 1 1 0.89779 0.82859 0.31446 2 Median 0.8574 0.82675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94009 0.83043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9098100 4561900 4536300 8910900 4480400 4430500 0 0 0 0 0 0 187230 81462 105760 0 0 0 0 0 0 24772 2504 26020 131444;131445 132181;132182 132182 2 MQEAMTQEVSDVFSDTTTPIK LASQLQDSLKDLKARMQEAMTQEVSDVFSD QEVSDVFSDTTTPIKLLAVAATAPPDAPNR R M Q I K L 1 0 0 2 0 2 2 0 0 1 0 1 2 1 1 2 4 0 0 2 0 0 21 0 2357.0767 P18206 P18206 587 607 VCL Vinculin yes yes 2;3 6.9032E-06 40.025 By MS/MS By matching By matching 2 1 2 0.81912 0.8049 24.896 5 Median 0.82127 0.80356 0.23629 2 0 Median 1.6293 1.3992 NaN 1 0 Median 0.76154 0.81238 8.0823 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11880000 6322600 5557800 9505700 5099100 4406700 857460 414520 442930 1517200 809070 708170 0 0 0 0 0 0 0 0 0 24773 2057 26021 131446;131447;131448;131449;131450 132183;132184;132185;132186 132185 4 MQEEVVRREEAAVDAQQQK AKAQAEREAKELQQRMQEEVVRREEAAVDA VVRREEAAVDAQQQKRSIQEELQQLRQSSE R M Q Q K R 3 2 0 1 0 4 4 0 0 0 0 1 1 0 0 0 0 0 0 3 0 0 19 2 2243.0964 Q15149 Q15149 1534 1552 PLEC Plectin yes yes 3 0.00086271 29.274 By MS/MS 1 0.91709 0.88471 NaN 1 Median 0.91709 0.88471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7811200 4344100 3467000 7811200 4344100 3467000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24774 2933 26022 131451 132187;132188 132188 2 MQEHSDQVPVGNIPR LQTRGSRFIKFQEMKMQEHSDQVPVGNIPR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ K M Q P R S 0 1 1 1 0 2 1 1 1 1 0 0 1 0 2 1 0 0 0 2 0 0 15 0 1705.8206 P33993;C9J8M6 P33993 237 251 MCM7 DNA replication licensing factor MCM7 yes no 2;3 8.4804E-08 98.105 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 4 1 1 1 0.64298 0.6449 21.302 14 Median 0.65722 0.6214 15.578 3 0 Plateau 0.90197 0.78141 8.4354 4 0 Median 0.54606 0.56672 7.9696 4 0 Median 0.94271 0.81236 NaN 1 0 Median 0.62905 0.6637 NaN 1 0 Median 1.2042 0.98406 NaN 1 0 Median 138300000 82500000 55798000 43665000 25406000 18259000 24536000 13868000 10668000 62344000 39184000 23160000 3023900 1455100 1568700 3871400 2189000 1682400 857470 398380 459090 24775 2225 26023;26024 131452;131453;131454;131455;131456;131457;131458;131459;131460;131461;131462;131463;131464;131465 132189;132190;132191;132192;132193;132194;132195;132196;132197;132198;132199;132200;132201;132202;132203;132204;132205;132206 132195 962 18 MQEIIASVDHIK ______________________________ ______________________________ - M Q I K F 1 0 0 1 0 1 1 0 1 3 0 1 1 0 0 1 0 0 0 1 0 0 12 0 1382.7228 C9JEV9;O95639 C9JEV9 1 12 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes no 2 0.00091572 51.092 By MS/MS By matching 1 1 1.1442 1.0145 18.94 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93436 0.88736 NaN 1 0 Median 1.4012 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3861900 1805800 2056100 0 0 0 0 0 0 3804000 1787300 2016700 57895 18524 39371 0 0 0 0 0 0 24776 693 26025 131466;131467 132207;132208 132208 247 2 MQELLQTQDFSK REHQISPGDFPSLRKMQELLQTQDFSKFQA LRKMQELLQTQDFSKFQALKPKLLDTVDDM K M Q S K F 0 0 0 1 0 3 1 0 0 0 2 1 1 1 0 1 1 0 0 0 0 0 12 0 1466.7075 A0A024R571;Q9H4M9;C9J2Z4 A0A024R571 373 384 EHD1 EH domain-containing protein 1 yes no 2 3.2326E-06 109.42 By MS/MS By matching 2 1 0.51762 0.53147 82.851 3 Median 0.81529 0.79658 112.41 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51762 0.53147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11034000 5729800 5304300 10730000 5562700 5167100 0 0 0 0 0 0 304250 167130 137130 0 0 0 0 0 0 24777 5 26026 131468;131469;131470 132209;132210 132209 2 MQEMIAR NKDQILLEKEAELRRMQEMIARMQAQMQMQ EKEAELRRMQEMIARMQAQMQMQMQGGDGD R M Q A R M 1 1 0 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 7 0 877.41499 Q15019;B5MCX3;H7C2Y0 Q15019 332 338 SEPT2 Septin-2 yes no 2 0.0017105 122.79 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.2953 1.1298 18.693 4 Median 1.5792 1.6183 NaN 1 0 Median 1.2831 1.094 NaN 1 0 Median 1.0607 1.1602 NaN 1 0 Median 1.3076 1.1001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35972000 16196000 19776000 621030 168930 452100 1646400 738160 908270 23015000 10933000 12082000 10689000 4356300 6333000 0 0 0 0 0 0 24778 2914 26027 131471;131472;131473;131474 132211;132212;132213;132214 132212 4 MQEQQADLQR KHKIQLEQVQEWKSKMQEQQADLQRRLKEA EWKSKMQEQQADLQRRLKEARKEAKEALEA K M Q Q R R 1 1 0 1 0 4 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1245.5772 E7EX90;Q14203;Q6AWB1 E7EX90 248 257 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 1.4562E-46 192.14 By MS/MS 2 1.4312 1.2125 0.31117 2 Median NaN NaN NaN 0 0 Median 1.4312 1.2125 0.31117 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8512700 3652800 4859900 0 0 0 8512700 3652800 4859900 0 0 0 0 0 0 0 0 0 0 0 0 24779 906 26028 131475;131476 132215;132216 132215 2 MQEVVANLQYDDGSGMK DGDLIESFLDISRPKMQEVVANLQYDDGSG EVVANLQYDDGSGMKREATADDLIKVVEEL K M Q M K R 1 0 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 17 0 1883.8393 Q16531 Q16531 1105 1121 DDB1 DNA damage-binding protein 1 yes yes 2 4.0032E-08 97.551 By MS/MS By MS/MS By MS/MS 2 3 1 1.0632 1.0486 17.795 6 Median NaN NaN NaN 0 0 Median 1.2309 1.0671 3.2191 2 0 Median 0.88172 0.94928 15.146 3 0 Median 1.555 1.3465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23413000 10992000 12421000 0 0 0 3538100 1580900 1957300 14290000 7304400 6986000 5584900 2106700 3478200 0 0 0 0 0 0 24780 2985 26029 131477;131478;131479;131480;131481;131482 132217;132218;132219;132220 132217 4 MQEVVANLQYDDGSGMKR DGDLIESFLDISRPKMQEVVANLQYDDGSG VVANLQYDDGSGMKREATADDLIKVVEELT K M Q K R E 1 1 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 18 1 2039.9405 Q16531 Q16531 1105 1122 DDB1 DNA damage-binding protein 1 yes yes 2;3 5.6626E-15 148.36 By MS/MS By MS/MS By MS/MS By MS/MS 6 2 7 1 0.9688 1.0394 21.167 16 Median 1.0911 1.136 12.538 6 1 Median 1.328 1.2456 0.23071 2 0 Median 0.72681 0.84813 14.806 7 1 Median 1.5494 1.489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 331290000 171560000 159730000 138350000 68784000 69570000 14589000 5803100 8786300 174850000 95679000 79176000 3488600 1293100 2195500 0 0 0 0 0 0 24781 2985 26030;26031 131483;131484;131485;131486;131487;131488;131489;131490;131491;131492;131493;131494;131495;131496;131497;131498 132221;132222;132223;132224;132225;132226;132227;132228;132229;132230;132231;132232;132233;132234;132235;132236;132237;132238;132239;132240;132241 132222 1638 21 MQEVYNFNAINNSEIR QTLQRAPLPLGHIKRMQEVYNFNAINNSEI QEVYNFNAINNSEIRFRWLRLCIQSKWEDA R M Q I R F 1 1 4 0 0 1 2 0 0 2 0 0 1 1 0 1 0 0 1 1 0 0 16 0 1940.9051 P09960 P09960 521 536 LTA4H Leukotriene A-4 hydrolase yes yes 2 4.5894E-08 137.16 By MS/MS By matching By matching 2 2 1 1.0676 1.008 4.2155 5 Median 1.0669 1.0324 3.1379 2 0 Median 1.1334 1.0003 1.0804 2 0 Median 0.88698 0.9389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26553000 12239000 14313000 22030000 10198000 11832000 2775700 1146500 1629200 1747400 894830 852530 0 0 0 0 0 0 0 0 0 24782 1924 26032;26033 131499;131500;131501;131502;131503 132242;132243;132244;132245 132245 714 4 MQFGVPLAR SEFCLHTARQYALDRMQFGVPLARNQLIQK QYALDRMQFGVPLARNQLIQKKLADMLTEI R M Q A R N 1 1 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 9 0 1017.543 Q92947 Q92947 320 328 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes yes 2 0.0059661 56.011 By MS/MS 1 0.68055 0.67443 NaN 1 Median 0.68055 0.67443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5497700 3254300 2243300 5497700 3254300 2243300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24783 3569 26034 131504 132246 132246 1 MQGDPDDTSHR YERKWYSRKDLARHRMQGDPDDTSHRGHPL ARHRMQGDPDDTSHRGHPLCKFCDERYLDN R M Q H R G 0 1 0 3 0 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 0 11 0 1257.5044 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 174 184 ZNF598 Zinc finger protein 598 yes no 3 0.030583 21.301 By matching By MS/MS By matching By matching 1 1 2 5 0.95425 0.80696 13.284 9 Median 0.96198 0.95643 NaN 1 0 Median 0.83723 0.73446 NaN 1 0 Median 0.91804 0.95082 15.949 2 0 Median 0.95425 0.80276 8.3528 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1449400 723680 725730 97861 50530 47331 310060 166900 143160 425660 206540 219120 615840 299710 316120 0 0 0 0 0 0 24784 3278 26035 131505;131506;131507;131508;131509;131510;131511;131512;131513 132247 132247 1 MQGEAHPSASLIDR ______________________________ MMQGEAHPSASLIDRTIKMRKETEARKVVL M M Q D R T 2 1 0 1 0 1 1 1 1 1 1 0 1 0 1 2 0 0 0 0 0 0 14 0 1510.7198 Q96SK2;C9JYX1;C9J5K4 Q96SK2 2 15 TMEM209 Transmembrane protein 209 yes no 2 7.0688E-06 92.925 By MS/MS 2 0.80703 0.81748 12.802 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80703 0.81748 12.802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20168000 10572000 9596400 0 0 0 0 0 0 20168000 10572000 9596400 0 0 0 0 0 0 0 0 0 24785 3735 26036;26037 131514;131515 132248;132249;132250;132251 132250 1816 4 MQGLMFR VESMVKSLERENIRKMQGLMFRCSASCCED LERENIRKMQGLMFRCSASCCEDSQASMKQ K M Q F R C 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 0 0 0 7 0 881.42516 Q96C01 Q96C01 28 34 FAM136A Protein FAM136A yes yes 2 0.012717 77.748 By MS/MS By matching By matching By matching 2 2 1 1 1.5075 1.3759 24.459 6 Median 1.0018 0.97968 32.266 2 0 Median 1.7541 1.4777 1.9975 2 0 Median 1.3161 1.3362 NaN 1 0 Median 1.785 1.4167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10124000 4230600 5892900 6847800 3070100 3777700 1298500 439390 859110 1481200 549690 931520 495950 171460 324500 0 0 0 0 0 0 24786 3612 26038 131516;131517;131518;131519;131520;131521 132252 132252 1 MQGQEAVLAMSSR TRYLGSRPVKLFRVRMQGQEAVLAMSSRSW VRMQGQEAVLAMSSRSWLSYSYQSRFHLTP R M Q S R S 2 1 0 0 0 2 1 1 0 0 1 0 2 0 0 2 0 0 0 1 0 0 13 0 1406.6646 Q15393 Q15393 706 718 SF3B3 Splicing factor 3B subunit 3 yes yes 2 3.9649E-08 166.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 5 6 3 0.90926 0.90366 23.324 17 Median 0.82106 0.80321 NaN 1 1 Median 1.0477 0.86587 7.746 2 0 Median 0.86653 0.934 6.9671 5 1 Median 1.0478 0.92216 8.9415 6 1 Median 0.51935 0.53327 10.821 3 2 Median NaN NaN NaN 0 0 Median 195820000 101530000 94293000 12591000 6559700 6031300 41193000 19976000 21217000 92093000 46180000 45913000 18470000 9231700 9238100 31477000 19583000 11894000 0 0 0 24787 2946 26039;26040 131522;131523;131524;131525;131526;131527;131528;131529;131530;131531;131532;131533;131534;131535;131536;131537;131538 132253;132254;132255;132256;132257;132258;132259;132260;132261;132262;132263;132264;132265;132266;132267;132268;132269;132270;132271;132272;132273;132274;132275;132276 132253 1627 24 MQGQSPPAPTR EKPALLSQIDAEFEKMQGQSPPAPTRGISK EFEKMQGQSPPAPTRGISKHSTSGTDEGED K M Q T R G 1 1 0 0 0 2 0 1 0 0 0 0 1 0 3 1 1 0 0 0 0 0 11 0 1168.5659 Q14008 Q14008 812 822 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.018812 35.511 By MS/MS By matching 1 1 0.71243 0.61389 2.1589 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69099 0.60459 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73455 0.62333 NaN 1 0 Median 576890 324360 252520 0 0 0 0 0 0 0 0 0 450670 257690 192970 0 0 0 126220 66670 59554 24788 2850 26041 131539;131540 132277 132277 1 MQGSITTPGSIALAQAQAQAQVPAK EYIEYGQQSRDPPVKMQGSITTPGSIALAQ IALAQAQAQAQVPAKAPLAGQVSTMVTTST K M Q A K A 6 0 0 0 0 5 0 2 0 2 1 1 1 0 2 2 2 0 0 1 0 0 25 0 2466.2901 A5YKK6 A5YKK6 1005 1029 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.065167 14.109 By MS/MS 1 0.49842 0.48076 NaN 1 Median 0.49842 0.48076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7319600 5615300 1704300 7319600 5615300 1704300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24789 503 26042 131541 132278 132278 1 MQGSLEAHVNGFR KLKDLYIRPNIAQKRMQGSLEAHVNGFRFT KRMQGSLEAHVNGFRFTSVRGDKVDILYNN R M Q F R F 1 1 1 0 0 1 1 2 1 0 1 0 1 1 0 1 0 0 0 1 0 0 13 0 1444.6881 Q9Y5B9 Q9Y5B9 676 688 SUPT16H FACT complex subunit SPT16 yes yes 3 0.006468 44.616 By MS/MS By MS/MS 1 1 1.4717 1.5048 27.174 2 Median 1.2479 1.2417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7358 1.8236 NaN 1 1 Median NaN NaN NaN 0 0 Median 9799500 3771600 6027900 6459000 2704100 3754900 0 0 0 0 0 0 0 0 0 3340500 1067500 2273000 0 0 0 24790 4456 26043 131542;131543 132279;132280 132279 2 MQHLIAR SGETAKGDYPLEAVRMQHLIAREAEAAIYH DYPLEAVRMQHLIAREAEAAIYHLQLFEEL R M Q A R E 1 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 867.47489 H3BTN5;P14618;B4DNK4 P14618 377 383 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.0083471 86.121 By MS/MS By MS/MS By MS/MS By matching 13 12 2 2 1.2173 1.0635 14.809 28 Median 1.2331 1.2291 12.048 13 0 Median 1.19 1.0263 17.093 11 0 Median 1.0748 1.1012 21.711 2 0 Median 1.2122 1.0568 1.1638 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 278160000 120450000 157710000 71925000 30964000 40961000 203320000 88264000 115060000 2577600 1093500 1484100 336400 132130 204260 0 0 0 0 0 0 24791 2005;1237 26044;26045 131544;131545;131546;131547;131548;131549;131550;131551;131552;131553;131554;131555;131556;131557;131558;131559;131560;131561;131562;131563;131564;131565;131566;131567;131568;131569;131570;131571;131572 132281;132282;132283;132284;132285;132286;132287;132288;132289;132290;132291;132292;132293;132294;132295;132296 132292 415 16 MQHNLEQQIQAR GLAQQWDQLDQLGMRMQHNLEQQIQARNTT GMRMQHNLEQQIQARNTTGVTEEALKEFSM R M Q A R N 1 1 1 0 0 4 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 12 0 1494.7361 A0A0D9SF54;Q13813 Q13813 2304 2315 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 8.6604E-07 153.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 7 8 4 5 1.1193 1.0178 19.093 33 Median 1.2612 1.25 12.863 5 1 Median 1.3099 1.0464 5.3844 4 0 Median 0.92154 1.0034 23.884 7 1 Median 1.1049 0.96512 9.4992 8 1 Median 0.89457 0.9299 15.804 4 0 Median 1.2549 1.0378 15.705 5 0 Median 398240000 188330000 209910000 39829000 17282000 22547000 139260000 58913000 80342000 120220000 63086000 57136000 47065000 22814000 24252000 31962000 16521000 15441000 19905000 9715300 10190000 24792 264;2838 26046;26047 131573;131574;131575;131576;131577;131578;131579;131580;131581;131582;131583;131584;131585;131586;131587;131588;131589;131590;131591;131592;131593;131594;131595;131596;131597;131598;131599;131600;131601;131602;131603;131604;131605 132297;132298;132299;132300;132301;132302;132303;132304;132305;132306;132307;132308;132309;132310;132311;132312;132313;132314;132315;132316;132317;132318;132319;132320;132321;132322;132323;132324;132325;132326;132327;132328;132329;132330;132331;132332;132333;132334;132335;132336;132337;132338;132339;132340;132341;132342;132343 132330 130 46 MQHNVLVAEVTQQLK EIEAAIVRIMKSRKKMQHNVLVAEVTQQLK MQHNVLVAEVTQQLKARFLPSPVVIKKRIE K M Q L K A 1 0 1 0 0 3 1 0 1 0 2 1 1 0 0 0 1 0 0 3 0 0 15 0 1736.9243 Q13618;A0A087WTG3 Q13618 717 731 CUL3 Cullin-3 yes no 3 0.00030936 42.568 By MS/MS By MS/MS By matching 1 1 1 1.0805 1.0184 17.584 3 Median 1.0805 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1777 1.2922 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85895 0.91681 NaN 1 0 Median NaN NaN NaN 0 0 Median 9102700 4231300 4871400 4844600 2276800 2567800 0 0 0 3201400 1407100 1794200 0 0 0 1056700 547400 509340 0 0 0 24793 2831 26048 131606;131607;131608 132344;132345;132346 132344 3 MQIFVKTLTGK ______________________________ ______________________________ - M Q G K T 0 0 0 0 0 1 0 1 0 1 1 2 1 1 0 0 2 0 0 1 0 0 11 1 1264.7213 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;F5GZ39;J3QSA3 P0CG48 1 11 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2;3 0.00040352 73.067 By MS/MS By matching By matching By MS/MS By matching 4 1 3 5 1 1.1716 0.95479 12.253 13 Median NaN NaN NaN 0 0 Median 1.3545 0.96192 7.1981 4 0 Median 0.97146 0.70961 NaN 1 0 Median 1.3176 0.98072 2.4597 3 0 Median 0.86956 0.92567 15.673 4 1 Median 1.1274 0.9785 NaN 1 0 Median 69696000 36526000 33170000 0 0 0 3238700 1429100 1809600 1710200 804640 905570 1971200 847460 1123800 60440000 32472000 27968000 2335800 973070 1362800 24794 606 26049;26050 131609;131610;131611;131612;131613;131614;131615;131616;131617;131618;131619;131620;131621;131622 132347;132348;132349;132350;132351;132352;132353 132352 233 6 MQILVER LLRIIPYLSFGEVEKMQILVERFKPYCNFD LSFGEVEKMQILVERFKPYCNFDKYDEDHS K M Q E R F 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 7 0 887.48987 Q5T4S7;X6R960 Q5T4S7 4631 4637 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00080106 131.04 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24795 3089 26051 131623 132354 132354 1 MQIVLQGHATR VAGTGMIGENEQEKKMQIVLQGHATRVTAK QEKKMQIVLQGHATRVTAKSQQSGEKAFRC K M Q T R V 1 1 0 0 0 2 0 1 1 1 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1252.671 E7EN86;P52747 E7EN86 186 196 ZNF143 Zinc finger protein 143 yes no 2;3 5.0387E-05 77.062 By MS/MS By MS/MS 2 3 1.0568 1.2302 20.555 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1723 1.216 NaN 1 0 Median 0.95272 0.90602 14.4 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11906000 5468200 6437600 0 0 0 0 0 0 6029200 2507200 3522000 5876600 2961000 2915600 0 0 0 0 0 0 24796 861 26052 131624;131625;131626;131627;131628 132355;132356;132357;132358;132359;132360;132361 132355 7 MQKEITALAPSTMK VLSGGTTMYPGIADRMQKEITALAPSTMKI RMQKEITALAPSTMKIKIIAPPERKYSVWI R M Q M K I 2 0 0 0 0 1 1 0 0 1 1 2 2 0 1 1 2 0 0 0 0 0 14 1 1547.8051 P63267;P62736;P63261;P60709;A0A2R8YFE2;P68032;P68133;A6NL76 P63261 313 326 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2;3 6.089E-05 78.505 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.96327 0.96724 23.648 6 Median 1.2539 1.1742 17.537 3 0 Median 0.8499 0.72463 NaN 1 0 Median 0.84886 0.92502 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8441 0.88946 NaN 1 0 Median NaN NaN NaN 0 0 Median 51358000 24140000 27218000 38162000 17437000 20725000 1802500 822610 979860 6514300 3081700 3432600 0 0 0 4879000 2798200 2080800 0 0 0 24797 2625;2630;2595 26053 131629;131630;131631;131632;131633;131634 132362;132363;132364;132365;132366 132362 5 MQLKPMEINPEMLNK ______________________________ MQLKPMEINPEMLNKVLSRLGVAGQWRFVD - M Q N K V 0 0 2 0 0 1 2 0 0 1 2 2 3 0 2 0 0 0 0 0 0 0 15 1 1814.9093 P09936;D6RE83;D6R956;D6R974;D6RF53 P09936 1 15 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 5.5323E-06 95.483 By MS/MS By matching By MS/MS By matching 9 6 3 1 0.82507 0.83009 33.019 19 Median 0.82042 0.83215 13.932 9 0 Median 0.8935 0.81784 28.702 6 0 Median 0.81342 0.83009 69.164 3 0 Median NaN NaN NaN 0 0 Median 0.82507 0.8706 NaN 1 0 Median NaN NaN NaN 0 0 Median 770080000 400920000 369160000 741660000 386240000 355420000 18112000 9379500 8732400 8903900 4881300 4022600 0 0 0 1407100 421990 985080 0 0 0 24798 1923 26054;26055;26056;26057 131635;131636;131637;131638;131639;131640;131641;131642;131643;131644;131645;131646;131647;131648;131649;131650;131651;131652;131653 132367;132368;132369;132370;132371;132372;132373;132374;132375;132376;132377;132378;132379;132380;132381;132382;132383;132384 132379 711;712 18 MQLLEIITTEK PEKVIGMHYFSPVDKMQLLEIITTEKTSKD PVDKMQLLEIITTEKTSKDTSASAVAVGLK K M Q E K T 0 0 0 0 0 1 2 0 0 2 2 1 1 0 0 0 2 0 0 0 0 0 11 0 1317.7214 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 506 516 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.00018403 77.379 By MS/MS By MS/MS By MS/MS 1 4 1 1.1084 1.0146 22.341 5 Median 1.1084 1.0146 NaN 1 0 Median 1.04 0.92801 26.338 3 0 Median 1.1863 1.2506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76663000 22373000 54290000 8294000 3782000 4512000 63256000 16177000 47079000 5113600 2414500 2699100 0 0 0 0 0 0 0 0 0 24799 1180 26058 131654;131655;131656;131657;131658;131659 132385;132386;132387;132388;132389;132390;132391 132388 7 MQLPSAAGLHPTGHQSKEELGR KNELNRLRNLARAHKMQLPSAAGLHPTGHQ GLHPTGHQSKEELGRAMQVAKVSTASVGRF K M Q G R A 2 1 0 0 0 2 2 3 2 0 3 1 1 0 2 2 1 0 0 0 0 0 22 1 2343.1754 Q15050 Q15050 199 220 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 4 2.1781E-09 56.055 By MS/MS 1 0.81862 0.84111 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81862 0.84111 NaN 1 0 Median NaN NaN NaN 0 0 Median 6805400 3192900 3612600 0 0 0 0 0 0 0 0 0 0 0 0 6805400 3192900 3612600 0 0 0 24800 2920 26059 131660 132392;132393 132393 1604 2 MQLSEIMER GAVREIRKDNQFLARMQLSEIMERDAERKR NQFLARMQLSEIMERDAERKRKVKQLFNSL R M Q E R D 0 1 0 0 0 1 2 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 9 0 1135.5366 P78316 P78316 817 825 NOP14 Nucleolar protein 14 yes yes 2 0.0084827 50.04 By matching By MS/MS By matching 1 2 2 1.421 1.4927 27.416 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4737 1.5795 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4613 1.5521 5.5167 2 0 Median 1.1043 0.95138 5.5071 2 0 Median 9334300 4135400 5198800 0 0 0 0 0 0 2619900 1340800 1279100 0 0 0 6172600 2546700 3625900 541740 247940 293800 24801 2637 26060 131661;131662;131663;131664;131665 132394 132394 1 MQLSGEGAK GATVFVQPLDLVKNRMQLSGEGAKTREYKT DLVKNRMQLSGEGAKTREYKTSFHALTSIL R M Q A K T 1 0 0 0 0 1 1 2 0 0 1 1 1 0 0 1 0 0 0 0 0 0 9 0 919.44332 I3L1P8;Q02978 I3L1P8 38 46 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.06407 27.254 By MS/MS 1 1.0686 1.0457 NaN 1 Median 1.0686 1.0457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1534400 787820 746530 1534400 787820 746530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24802 1277 26061 131666 132395 132395 1 MQLWLNDPNNVEK PWHKLSLKGREPFVRMQLWLNDPNNVEKLM VRMQLWLNDPNNVEKLMDMKRMEKKAYMKR R M Q E K L 0 0 3 1 0 1 1 0 0 0 2 1 1 0 1 0 0 1 0 1 0 0 13 0 1599.7715 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 1140 1152 no no 2 0.063766 37.556 By MS/MS 1 0.27487 0.30314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27487 0.30314 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14141000 11360000 2780100 0 0 0 0 0 0 14141000 11360000 2780100 0 0 0 0 0 0 0 0 0 24803 388 26062 131667 132396 132396 1 MQMLEDEDDLAYAETEK LLTTQGVDMISKMLKMQMLEDEDDLAYAET MLEDEDDLAYAETEKKTRTDSTSDGRPAWM K M Q E K K 2 0 0 3 0 1 4 0 0 0 2 1 2 0 0 0 1 0 1 0 0 0 17 0 2029.8496 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4346 4362 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00032838 45.257 By MS/MS By matching By matching By matching 1 1 1 1 1.1153 1.1044 20.435 4 Median 0.80642 0.80053 NaN 1 0 Median 1.2439 1.1147 NaN 1 0 Median 0.99988 1.0943 NaN 1 0 Median 1.3969 1.3041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5771300 3066900 2704400 3471300 2098800 1372500 151920 69274 82649 2050300 859050 1191200 97854 39865 57989 0 0 0 0 0 0 24804 2865 26063 131668;131669;131670;131671 132397 132397 1 MQMLEDEDDLAYAETEKK LLTTQGVDMISKMLKMQMLEDEDDLAYAET LEDEDDLAYAETEKKTRTDSTSDGRPAWMR K M Q K K T 2 0 0 3 0 1 4 0 0 0 2 2 2 0 0 0 1 0 1 0 0 0 18 1 2157.9446 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4346 4363 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 3.4642E-13 141.13 By MS/MS By matching By MS/MS 2 2 1 0.90137 1.0216 22.679 5 Median 0.8448 0.87983 21.18 2 0 Median 0.97121 0.93948 38.168 2 0 Median 0.90137 1.0216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52490000 24216000 28274000 34858000 16209000 18648000 5268600 2190700 3077800 12364000 5816100 6547700 0 0 0 0 0 0 0 0 0 24805 2865 26064 131672;131673;131674;131675;131676 132398;132399;132400;132401 132399 4 MQNDAGEFVDLYVPR ______________________________ MQNDAGEFVDLYVPRKCSASNRIIGAKDHA - M Q P R K 1 1 1 2 0 1 1 1 0 0 1 0 1 1 1 0 0 0 1 2 0 0 15 0 1752.8141 Q8WVC2;P63220;Q9BYK1;Q9BYK2 Q8WVC2 1 15 RPS21 40S ribosomal protein S21 yes no 2 0.00019972 56.359 By MS/MS By matching By MS/MS By MS/MS 1 2 3 2 1.0545 0.92129 8.2075 8 Median 0.94539 0.91902 NaN 1 0 Median 1.1017 0.92898 0.82689 2 0 Median 0.98574 0.98542 11.835 3 0 Median 1.0757 0.85434 3.8414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6976200 3525000 3451200 913310 461600 451700 949600 432570 517030 4205100 2211200 1993900 908140 419580 488560 0 0 0 0 0 0 24806 2623 26065;26066 131677;131678;131679;131680;131681;131682;131683;131684 132402;132403;132404;132405 132405 1286 4 MQNSDFLR ______________________________ NSDFYRRMQNSDFLRELVITIAREGLEDKY R M Q L R E 0 1 1 1 0 1 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 8 0 1009.4651 M0R2P8;M0R3A4;M0QYA2;Q9NWS0;M0QXD5;M0QZ61;M0QZZ1;M0R028;M0QZM3;M0QYF4 M0R2P8 13 20 PIH1D1 PIH1 domain-containing protein 1 yes no 2 0.0030883 101.64 By MS/MS By matching 1 1 1.1271 1.0076 3.4646 2 Median 1.0333 0.98326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2295 1.0326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4718500 2168600 2549900 4292000 1982200 2309800 0 0 0 0 0 0 426490 186380 240110 0 0 0 0 0 0 24807 1414 26067 131685;131686 132406;132407 132406 2 MQPQESHVHYSR ______________________________ ______________________________ - M Q S R W 0 1 0 0 0 2 1 0 2 0 0 0 1 0 1 2 0 0 1 1 0 0 12 0 1497.6783 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 1 12 SMIM1 Small integral membrane protein 1 yes no 3 0.00010665 83.047 By MS/MS 1 1.4701 1.2476 NaN 1 Median NaN NaN NaN 0 0 Median 1.4701 1.2476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6183300 2589700 3593600 0 0 0 6183300 2589700 3593600 0 0 0 0 0 0 0 0 0 0 0 0 24808 381 26068 131687 132408 132408 1 MQQENMKPQEQLTLEPYER STASAEAVFASEVKKMQQENMKPQEQLTLE NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K M Q E R D 0 1 1 0 0 4 4 0 0 0 2 1 2 0 2 0 1 0 1 0 0 0 19 1 2391.1199 P22087;M0QXL5;M0R299 P22087 286 304 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 2.6808E-19 155.24 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 5 4 5 0.76593 0.8364 47.106 17 Median 0.64615 0.69216 NaN 1 0 Median 0.97617 0.90414 9.5584 2 0 Median 0.74919 0.80852 13.954 5 0 Median 1.1719 1.0607 35.197 4 0 Median 0.69986 0.76185 79.866 5 2 Median NaN NaN NaN 0 0 Median 355050000 194620000 160430000 3111300 1454200 1657100 1691300 903570 787770 267640000 147000000 120640000 14853000 7022900 7829700 67755000 38237000 29518000 0 0 0 24809 2097 26069;26070;26071 131688;131689;131690;131691;131692;131693;131694;131695;131696;131697;131698;131699;131700;131701;131702;131703;131704 132409;132410;132411;132412;132413;132414;132415;132416;132417;132418;132419;132420;132421;132422;132423;132424;132425;132426;132427;132428;132429;132430 132425 856;857 22 MQQHFEFEYQTK YLWLCYNGEIYNHKKMQQHFEFEYQTKVDG HKKMQQHFEFEYQTKVDGEIILHLYDKGGI K M Q T K V 0 0 0 0 0 3 2 0 1 0 0 1 1 2 0 0 1 0 1 0 0 0 12 0 1614.7137 P08243;F8WEJ5;C9J057;C9JM09;C9JT45 P08243 84 95 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2;3 0.00058617 73.781 By MS/MS By matching 2 1 1.7237 1.6301 28.806 3 Plateau 1.7237 1.6301 13.28 2 0 Median 1.1801 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20276000 6592900 13683000 17610000 5703900 11906000 2665700 889010 1776700 0 0 0 0 0 0 0 0 0 0 0 0 24810 1901 26072 131705;131706;131707 132431;132432;132433 132431 3 MQQLEQMLTALDQMR MQDLNGNNQSVTRQKMQQLEQMLTALDQMR MQQLEQMLTALDQMRRSIVSELAGLLSAME K M Q M R R 1 1 0 1 0 4 1 0 0 0 3 0 3 0 0 0 1 0 0 0 0 0 15 0 1834.874 P40763;G8JLH9 P40763 200 214 STAT3 Signal transducer and activator of transcription 3;Signal transducer and activator of transcription yes no 2 0.00092158 44.765 By MS/MS By MS/MS 1 1 1.0888 1.0122 6.3265 2 Median 1.0688 1.0585 NaN 1 0 Median 1.1091 0.96788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3580900 1707500 1873400 1760200 871940 888290 1820700 835580 985130 0 0 0 0 0 0 0 0 0 0 0 0 24811 2289 26073 131708;131709 132434;132435;132436 132435 2 MQQNIQELEEQLEEEESAR EEEERCQHLQAEKKKMQQNIQELEEQLEEE IQELEEQLEEEESARQKLQLEKVTTEAKLK K M Q A R Q 1 1 1 0 0 4 7 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 19 0 2332.0489 P35579 P35579 941 959 MYH9 Myosin-9 yes yes 2 4.363E-38 198.46 By MS/MS By matching 1 1 1.0861 0.96169 22.266 2 Median 1.1992 1.1257 NaN 1 0 Median 0.98369 0.8216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12794000 5338400 7455800 11203000 4574600 6628300 1591300 763770 827540 0 0 0 0 0 0 0 0 0 0 0 0 24812 2244 26074 131710;131711 132437;132438 132438 2 MQQQLDEYQELLDIK LLAEKEREMAEMRARMQQQLDEYQELLDIK MQQQLDEYQELLDIKLALDMEIHAYRKLLE R M Q I K L 0 0 0 2 0 4 2 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 15 0 1892.919 P02545;Q3BDU5 P02545 352 366 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 3.7817E-09 117.98 By MS/MS By MS/MS By MS/MS By matching 4 3 9 3 1.1112 1.1043 31.138 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1574 1.146 10.046 4 0 Median 1.6467 1.4125 18.881 3 0 Median 1.0256 1.0166 5.1854 9 0 Median 1.3969 1.1413 72.287 3 0 Median 179940000 81460000 98485000 0 0 0 0 0 0 47315000 20617000 26697000 4995100 1889000 3106100 102780000 48628000 54155000 24852000 10326000 14527000 24813 1834;3010 26075;26076 131712;131713;131714;131715;131716;131717;131718;131719;131720;131721;131722;131723;131724;131725;131726;131727;131728;131729;131730 132439;132440;132441;132442;132443;132444;132445;132446;132447;132448;132449;132450;132451 132444 597 13 MQQSVYVKDDKIR ALANEQAAAAHELEKMQQSVYVKDDKIRLL EKMQQSVYVKDDKIRLLEEQLQHEISNKME K M Q I R L 0 1 0 2 0 2 0 0 0 1 0 2 1 0 0 1 0 0 1 2 0 0 13 2 1608.8294 Q86UP2 Q86UP2 671 683 KTN1 Kinectin yes yes 3;4 0.0022404 37.613 By MS/MS By matching 3 2 1.2892 1.469 22.082 5 Median 1.4709 1.5549 30.086 3 0 Plateau NaN NaN NaN 0 0 Median 1.2182 1.3881 8.0099 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11072000 4808400 6263300 8228500 3793500 4435000 0 0 0 2843200 1014900 1828300 0 0 0 0 0 0 0 0 0 24814 3280 26077 131731;131732;131733;131734;131735 132452;132453;132454;132455;132456 132453 5 MQQYDLQGQPYGTR PLPAADAAHEFTVYRMQQYDLQGQPYGTRN RMQQYDLQGQPYGTRNAVLNTEARTMAAEV R M Q T R N 0 1 0 1 0 4 0 2 0 0 1 0 1 0 1 0 1 0 2 0 0 0 14 0 1683.7675 Q969V3 Q969V3 51 64 NCLN Nicalin yes yes 2 2.2819E-07 141.95 By MS/MS By MS/MS 1 1 0.93641 0.8587 3.5342 2 Median 0.90837 0.88043 NaN 1 0 Median 0.96532 0.83751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8750700 4903100 3847600 7132500 4104100 3028500 1618200 799010 819170 0 0 0 0 0 0 0 0 0 0 0 0 24815 3589 26078 131736;131737 132457;132458;132459 132457 3 MQSAAFSIAADVK EPLADTSSNQQKNFKMQSAAFSIAADVKDV FKMQSAAFSIAADVKDVKAAQSNENLSDSQ K M Q V K D 4 0 0 1 0 1 0 0 0 1 0 1 1 1 0 2 0 0 0 1 0 0 13 0 1337.6649 P49750;H0YIQ2 P49750 879 891 YLPM1 YLP motif-containing protein 1 yes no 2 8.3164E-07 101.93 By MS/MS 1 0.6906 0.76352 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6906 0.76352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9722200 5697800 4024400 0 0 0 0 0 0 9722200 5697800 4024400 0 0 0 0 0 0 0 0 0 24816 2395 26079 131738 132460;132461 132461 2 MQSFGMK GILGLGRIGREVATRMQSFGMKTIGYDPII IGREVATRMQSFGMKTIGYDPIISPEVSAS R M Q M K T 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 0 7 0 827.36698 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YF78;A0A286YFE1 A0A286YF22 164 170 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0083653 86.086 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.4593 1.2584 15.791 4 Linear 1.164 1.102 NaN 1 0 Median 1.4937 1.2695 NaN 1 0 Median 0.89024 0.89654 NaN 1 0 Median 1.4253 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18223000 8251800 9971400 4419900 2057100 2362800 6269700 2555600 3714100 1905900 1094400 811480 5627600 2544700 3082900 0 0 0 0 0 0 24817 351 26080 131739;131740;131741;131742 132462;132463;132464;132465 132464 4 MQSINAGFQSLK RRIRREIANSNERRRMQSINAGFQSLKTLI RRRMQSINAGFQSLKTLIPHTDGEKLSKAA R M Q L K T 1 0 1 0 0 2 0 1 0 1 1 1 1 1 0 2 0 0 0 0 0 0 12 0 1322.6653 Q01664;I3L254 Q01664 61 72 TFAP4 Transcription factor AP-4 yes no 2 2.3576E-07 120.09 By MS/MS 1 0.91419 0.94463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91419 0.94463 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13444000 5213600 8230800 0 0 0 0 0 0 13444000 5213600 8230800 0 0 0 0 0 0 0 0 0 24818 2690 26081 131743 132466 132466 1 MQSLDKDIVALMVR DYTCITFQPDLSKFKMQSLDKDIVALMVRR KMQSLDKDIVALMVRRAYDIAGSTKDVKVF K M Q V R R 1 1 0 2 0 1 0 0 0 1 2 1 2 0 0 1 0 0 0 2 0 0 14 1 1617.8582 P11388 P11388 228 241 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.00028145 93.058 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 4 2 6 2 1.3097 1.3688 28.965 15 Median 1.3097 1.3419 NaN 1 0 Median 1.4939 1.4477 NaN 1 0 Median 1.349 1.5728 27.042 4 0 Median 1.6443 1.5874 4.8726 2 0 Median 1.1831 1.3342 34.902 6 1 Median 1.5106 1.4015 NaN 1 0 Median 22965000 10693000 12272000 415900 224250 191650 473480 196070 277410 6649100 2905600 3743500 205410 84597 120810 15082000 7209800 7872200 138780 72607 66176 24819 1963 26082;26083 131744;131745;131746;131747;131748;131749;131750;131751;131752;131753;131754;131755;131756;131757;131758;131759 132467;132468;132469;132470;132471;132472;132473;132474;132475 132474 744 9 MQSLSLNK EERKAKDDATLSGKRMQSLSLNK_______ ATLSGKRMQSLSLNK_______________ R M Q N K - 0 0 1 0 0 1 0 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 8 0 919.4797 Q13442 Q13442 174 181 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2 0.052677 34.173 By MS/MS By MS/MS By matching 1 1 1 1.1493 1.0289 12.014 3 Median 0.9263 0.86188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1493 1.0839 NaN 1 0 Median 1.247 1.0289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13322000 6024400 7297900 6975900 3301700 3674200 0 0 0 5545200 2348500 3196700 801250 374190 427060 0 0 0 0 0 0 24820 2818 26084 131760;131761;131762 132476;132477 132476 2 MQSTLISAAR NLSELREIMNDLEKKMQSTLISAARDLGLD DLEKKMQSTLISAARDLGLDPGKQIKLDSS K M Q A R D 2 1 0 0 0 1 0 0 0 1 1 0 1 0 0 2 1 0 0 0 0 0 10 0 1076.5648 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 492 501 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0012456 105.52 By MS/MS 1 1.4143 1.5008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4143 1.5008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12435000 4734400 7700900 0 0 0 0 0 0 12435000 4734400 7700900 0 0 0 0 0 0 0 0 0 24821 2324 26085 131763 132478 132478 1 MQTDKPFDQTTISLQMGTNK GMTAYGTRRHLYDPKMQTDKPFDQTTISLQ PFDQTTISLQMGTNKGASQAGMLAPGTRRD K M Q N K G 0 0 1 2 0 3 0 1 0 1 1 2 2 1 1 1 4 0 0 0 0 0 20 1 2283.0875 Q15417;E9PDU6 Q15417 193 212 CNN3 Calponin-3;Calponin yes no 3 5.6006E-06 47.047 By MS/MS 2 0.98862 1.027 6.8836 2 Median 0.98862 1.027 6.8836 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15950000 7926900 8023100 15950000 7926900 8023100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24822 2950 26086 131764;131765 132479 132479 1 MQTNQTPPTYNK GTEHSGSTVPSILNRMQTNQTPPTYNKTNK LNRMQTNQTPPTYNKTNKFTYGFQNIVDAY R M Q N K T 0 0 2 0 0 2 0 0 0 0 0 1 1 0 2 0 3 0 1 0 0 0 12 0 1421.6609 Q93050;B7Z641;B7Z2A9;F5H1T6 Q93050 355 366 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.00061097 68.657 By MS/MS 1 0.95015 0.83263 NaN 1 Median NaN NaN NaN 0 0 Median 0.95015 0.83263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1811100 986920 824140 0 0 0 1811100 986920 824140 0 0 0 0 0 0 0 0 0 0 0 0 24823 3576 26087 131766 132480;132481 132481 2 MQTPVNIPVPVLR ______________________________ ______________________________ - M Q L R L 0 1 1 0 0 1 0 0 0 1 1 0 1 0 3 0 1 0 0 3 0 0 13 0 1462.833 Q9H840 Q9H840 1 13 GEMIN7 Gem-associated protein 7 yes yes 2 0.0022727 48.64 By MS/MS By matching By matching By matching 2 2 1 1 0.78307 0.71675 13.277 6 Median 0.71831 0.70473 0.00094539 2 0 Median 0.84164 0.71675 0.5083 2 0 Median 0.71853 0.72898 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92358 0.98736 NaN 1 0 Median NaN NaN NaN 0 0 Median 8269400 4514800 3754700 4191200 2297700 1893400 2732300 1434400 1297900 965330 541970 423360 0 0 0 380590 240670 139920 0 0 0 24824 3987 26088 131767;131768;131769;131770;131771;131772 132482 132482 1 MQTQQVNTLK EQETQKRCLTQNDLKMQTQQVNTLKMSEKQ QNDLKMQTQQVNTLKMSEKQLKQENNHLME K M Q L K M 0 0 1 0 0 3 0 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 10 0 1189.6125 O75116;E9PF63;Q14DU5 O75116 812 821 ROCK2 Rho-associated protein kinase 2 yes no 2 0.041327 30.687 By MS/MS 2 1.1865 1.1004 32.974 2 Median NaN NaN NaN 0 0 Median 1.1865 1.1004 32.974 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2861200 1315300 1545800 0 0 0 2861200 1315300 1545800 0 0 0 0 0 0 0 0 0 0 0 0 24825 1644 26089 131773;131774 132483 132483 1 MQVDQEEPHVEEQQQQTPAENK EEPMETDQNAKEEEKMQVDQEEPHVEEQQQ PHVEEQQQQTPAENKAESEEMETSQAGSKD K M Q N K A 1 0 1 1 0 6 5 0 1 0 0 1 1 0 2 0 1 0 0 2 0 0 22 0 2621.1664 P34932;A0A087WYC1 P34932 522 543 HSPA4 Heat shock 70 kDa protein 4 yes no 3 1.6548E-12 72.09 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.80369 0.71677 4.7529 5 Median 0.73844 0.73854 NaN 1 0 Median 0.81939 0.70355 5.1633 2 0 Median 0.60011 0.66216 NaN 1 0 Median 0.82826 0.71677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36115000 19478000 16638000 1884100 1150100 734010 24414000 12975000 11439000 4425200 2736700 1688500 5391900 2616100 2775900 0 0 0 0 0 0 24826 2230 26090 131775;131776;131777;131778;131779 132484;132485;132486;132487;132488;132489 132484 6 MQVDQEEPHVEEQQQQTPAENKAESEEMETSQAGSK EEPMETDQNAKEEEKMQVDQEEPHVEEQQQ KAESEEMETSQAGSKDKKMDQPPQAKKAKV K M Q S K D 3 0 1 1 0 7 9 1 1 0 0 2 2 0 2 3 2 0 0 2 0 0 36 1 4085.7702 P34932;A0A087WYC1 P34932 522 557 HSPA4 Heat shock 70 kDa protein 4 yes no 4 5.5724E-16 53.408 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.75507 0.75349 13.536 5 Median 0.78509 0.81894 NaN 1 0 Median 0.73075 0.69283 11.869 2 0 Median 0.75507 0.8619 NaN 1 0 Median 0.68186 0.64952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49211000 26040000 23171000 23407000 12821000 10585000 12091000 5995300 6095800 11824000 6111100 5713000 1889100 1112500 776620 0 0 0 0 0 0 24827 2230 26091 131780;131781;131782;131783;131784 132490;132491;132492;132493;132494 132494 5 MQVGGDGVKVPGIDATTK KVHAPGLNLSGVGGKMQVGGDGVKVPGIDA GGDGVKVPGIDATTKLNVGAPDVTLRGPSL K M Q T K L 1 0 0 2 0 1 0 4 0 1 0 2 1 0 1 0 2 0 0 3 0 0 18 1 1771.9138 Q09666 Q09666 5338 5355 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 2.5054E-05 48.555 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.98081 1.0891 24.859 4 Median 0.96946 1.0553 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0338 1.1699 NaN 1 0 Median 0.67429 0.68341 NaN 1 0 Median 0.9923 1.124 NaN 1 0 Median NaN NaN NaN 0 0 Median 60966000 30203000 30763000 26285000 13155000 13130000 0 0 0 27109000 13379000 13731000 1010300 588670 421620 6561400 3080600 3480800 0 0 0 24828 2749 26092 131785;131786;131787;131788 132495;132496;132497;132498 132495 4 MQVTITLTSPIIR VSEAAIILNSCVEPKMQVTITLTSPIIREE PKMQVTITLTSPIIREENMREGDVTSGMVK K M Q I R E 0 1 0 0 0 1 0 0 0 3 1 0 1 0 1 1 3 0 0 1 0 0 13 0 1471.8432 Q96KR1;H0Y8W1 Q96KR1 861 873 ZFR Zinc finger RNA-binding protein yes no 2 0.0020372 67.776 By MS/MS 1 0.63485 0.6926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63485 0.6926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1910700 1153000 757730 0 0 0 0 0 0 1910700 1153000 757730 0 0 0 0 0 0 0 0 0 24829 3697 26093 131789 132499 132499 1810 1 MQVYKDEQVVVIK GHWSQGLKISMQDPKMQVYKDEQVVVIKDK PKMQVYKDEQVVVIKDKYPKARYHWLVLPW K M Q I K D 0 0 0 1 0 2 1 0 0 1 0 2 1 0 0 0 0 0 1 4 0 0 13 1 1577.8487 F8W6G5;C9JZ40;Q7Z2E3;C9J8U3 F8W6G5 122 134 APTX Aprataxin yes no 3 0.0081829 27.967 By MS/MS By MS/MS 1 1 1.4549 1.4331 11.611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4277 1.5558 NaN 1 0 Median 1.4826 1.3202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13322000 5800500 7521600 0 0 0 0 0 0 11779000 5331900 6447000 1543300 468670 1074600 0 0 0 0 0 0 24830 730 26094 131790;131791 132500;132501 132500 2 MRAEDGENYDIKK MYEKEAKQQEEKIEKMRAEDGENYDIKKQA EKMRAEDGENYDIKKQAEILQESRMMIPDC K M R K K Q 1 1 1 2 0 0 2 1 0 1 0 2 1 0 0 0 0 0 1 0 0 0 13 2 1567.7301 E5RIW3;E5RJD8;O75347;E5RHG6;E5RIX8;A0A494C144 E5RIW3 16 28 TBCA Tubulin-specific chaperone A yes no 3 1.966E-05 86.467 By MS/MS By MS/MS By matching 2 1 1 1.0931 1.1598 5.882 4 Median 1.0931 1.1665 2.7933 2 0 Median 1.1528 1.0448 NaN 1 0 Median 1.0421 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14934000 6734800 8199500 8201500 3687900 4513600 4650900 1991400 2659500 2081900 1055500 1026400 0 0 0 0 0 0 0 0 0 24831 852 26095 131792;131793;131794;131795 132502;132503 132503 2 MRAELGEYIR VYAILWSLSGDSRLKMRAELGEYIRRITTV DSRLKMRAELGEYIRRITTVPLPTAPNIPI K M R I R R 1 2 0 0 0 0 2 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 10 1 1236.6285 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2510 2519 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.00012431 106.62 By MS/MS By MS/MS 1 1 1.0295 1.1251 2.608 2 Median 1.0164 1.1045 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0428 1.146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16577000 8516000 8061200 8845500 4568600 4276800 0 0 0 7731700 3947400 3784400 0 0 0 0 0 0 0 0 0 24832 2865 26096 131796;131797 132504;132505;132506;132507 132506 4 MRDMGEMVTQGQTDAQYMFLR NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA MVTQGQTDAQYMFLRQRLQALDTGWNELHK K M R L R Q 1 2 0 2 0 3 1 2 0 0 1 0 4 1 0 0 2 0 1 1 0 0 21 1 2507.1066 Q01082;A0A087WUZ3 Q01082 1121 1141 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 8.5638E-19 92.492 By MS/MS By matching 3 1 1.013 1.2205 5.6802 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0045 1.2689 5.0496 3 1 Median 1.2698 1.1499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13837000 6666700 7170600 0 0 0 0 0 0 13631000 6564300 7067200 205820 102400 103420 0 0 0 0 0 0 24833 2681 26097;26098 131798;131799;131800;131801 132508;132509;132510;132511 132509 1362;1363;1377 4 MREDREVLR SNAHIQNELEREFERMREDREVLRVIFPTG EREFERMREDREVLRVIFPTGDSKVVLPCN R M R L R V 0 3 0 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 9 2 1202.619 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 959 967 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.0036379 47.603 By MS/MS By matching 2 1 0.87322 1.0095 6.4699 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85321 0.99451 2.1178 2 0 Median 1.0211 1.1091 NaN 1 0 Median 2211100 1116400 1094700 0 0 0 0 0 0 0 0 0 0 0 0 2007400 1033700 973710 203710 82749 120960 24834 486 26099 131802;131803;131804 132512 132512 1 MREDVISSIR EGLAPKLDPEEMKRKMREDVISSIRNFLIY EMKRKMREDVISSIRNFLIYVALLRVTPFI K M R I R N 0 2 0 1 0 0 1 0 0 2 0 0 1 0 0 2 0 0 0 1 0 0 10 1 1204.6234 Q8N4H5;F8W8Z9 Q8N4H5 20 29 TOMM5 Mitochondrial import receptor subunit TOM5 homolog yes no 3 0.004326 39.918 By MS/MS 1 1.2515 1.18 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2515 1.18 NaN 1 0 Median 856590 373160 483420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 856590 373160 483420 24835 3373 26100 131805 132513 132513 1 MREDYDSVEQDGDEPGPQR RKGRGFGSEEGSRARMREDYDSVEQDGDEP YDSVEQDGDEPGPQRSVEGWILFVTGVHEE R M R Q R S 0 2 0 4 0 2 3 2 0 0 0 0 1 0 2 1 0 0 1 1 0 0 19 1 2221.9182 Q9Y5S9 Q9Y5S9 50 68 RBM8A RNA-binding protein 8A yes yes 3 1.4607E-18 138.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 8 0.85569 0.78281 12.871 17 Median 0.57457 0.60819 17.22 2 0 Median 0.91093 0.80292 3.5883 2 0 Median 0.70632 0.73234 19.183 2 0 Median 0.92169 0.8253 0.86292 2 0 Median 0.65084 0.73144 12.446 3 0 Median 0.90882 0.78919 7.7816 6 1 Median 72256000 40070000 32185000 9044500 5393000 3651500 6886400 3753300 3133100 8942300 4975900 3966400 12587000 6372600 6214000 17674000 10779000 6895300 17122000 8797100 8325200 24836 4469 26101;26102 131806;131807;131808;131809;131810;131811;131812;131813;131814;131815;131816;131817;131818;131819;131820;131821;131822;131823;131824 132514;132515;132516;132517;132518;132519;132520;132521;132522;132523;132524;132525;132526;132527;132528;132529;132530;132531;132532;132533;132534;132535;132536;132537;132538;132539 132516 1996 26 MREEENEGIVQLR GKINLIGRLQLTTERMREEENEGIVQLRIL ERMREEENEGIVQLRILRTQEAIIQIMKMR R M R L R I 0 2 1 0 0 1 4 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 13 1 1601.7832 Q93034 Q93034 699 711 CUL5 Cullin-5 yes yes 3 0.00026573 64.224 By MS/MS By matching 1 1 0.90622 0.86378 8.0013 2 Median 0.8915 0.91406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92119 0.81626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5655900 2804300 2851700 5029900 2539000 2490900 0 0 0 0 0 0 626040 265300 360740 0 0 0 0 0 0 24837 3575 26103 131825;131826 132540 132540 1 MREEFDKIGMR PLYEKDSSVAARFQRMREEFDKIGMRRTVE RFQRMREEFDKIGMRRTVEGVLIVHEHRLP R M R M R R 0 2 0 1 0 0 2 1 0 1 0 1 2 1 0 0 0 0 0 0 0 0 11 2 1410.6748 O43809;H3BND3;H3BV41 O43809 67 77 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 3 0.00058104 57.175 By MS/MS By MS/MS 1 1 1.1435 1.1406 4.1301 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96532 1.1078 NaN 1 0 Median 1.3545 1.1744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17426000 7532900 9892800 0 0 0 0 0 0 8056800 3662000 4394800 9369000 3870900 5498000 0 0 0 0 0 0 24838 1592 26104 131827;131828 132541;132542 132542 2 MREEVITLIR DQSDQDFQEELDLMKMREEVITLIRSNQQL LDLMKMREEVITLIRSNQQLENDLNLMDIK K M R I R S 0 2 0 0 0 0 2 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 10 1 1258.7067 P46940;A0A0J9YXZ5;H0YLE8 P46940 892 901 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 0.00018393 132.88 By MS/MS By MS/MS By matching By matching By matching 5 6 1 3 1 1.1414 1.1707 28.885 16 Median 1.1575 1.2378 11.514 5 0 Median 1.1688 1.1803 27.991 6 0 Median 1.1873 1.4998 NaN 1 0 Median 1.0514 0.97278 33.166 3 0 Median NaN NaN NaN 0 0 Median 1.1438 1.034 NaN 1 0 Median 111450000 51029000 60423000 88938000 40715000 48222000 18143000 8104900 10038000 2202900 1044900 1158000 1954400 1083700 870660 0 0 0 213180 79584 133600 24839 2350 26105;26106 131829;131830;131831;131832;131833;131834;131835;131836;131837;131838;131839;131840;131841;131842;131843;131844 132543;132544;132545;132546;132547;132548 132544 1075 6 MREHLELFWSR FTELAILYSKFKPQKMREHLELFWSRVNIP KPQKMREHLELFWSRVNIPKVLRAAEQAHL K M R S R V 0 2 0 0 0 0 2 0 1 0 2 0 1 1 0 1 0 1 0 0 0 0 11 1 1502.7453 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1336 1346 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 6.0408E-05 97.911 By MS/MS By MS/MS 3 3 1.3767 1.4383 5.6185 6 Median 1.3697 1.4648 2.4501 3 0 Median 1.4451 1.3932 7.3125 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49350000 21020000 28330000 41723000 17835000 23888000 7626500 3184900 4441600 0 0 0 0 0 0 0 0 0 0 0 0 24840 44 26107;26108 131845;131846;131847;131848;131849;131850 132549;132550;132551;132552;132553;132554 132550 19 6 MREIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG - M R A K F 2 1 1 0 1 3 1 3 1 2 1 1 1 0 0 0 0 0 0 1 0 0 19 1 2109.0572 P04350;M0R2D3;M0QY85;M0R0X0;M0QY37;M0QX14;M0QYM7;M0R042;M0R2T4;P68371 P68371 1 19 TUBB4A;TUBB4B Tubulin beta-4A chain;Tubulin beta-4B chain no no 3;4 1.1382E-18 115.34 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 1.3263 1.2023 22.048 10 Median 1.2982 1.2932 26.06 2 0 Median 1.2017 1.0785 17.009 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6428 1.6796 18.925 2 0 Median 1.3211 1.1912 5.7881 2 0 Median 99993000 42489000 57504000 32411000 14171000 18241000 28068000 13294000 14774000 0 0 0 0 0 0 28282000 10033000 18250000 11231000 4991400 6239900 24841 2634;1849 26109 131851;131852;131853;131854;131855;131856;131857;131858;131859;131860 132555;132556;132557;132558;132559;132560;132561;132562;132563;132564;132565;132566 132556 12 MRGEAEAFAIGAR SQLIMQAEAEAASVRMRGEAEAFAIGARAR VRMRGEAEAFAIGARARAEAEQMAKKAEAF R M R A R A 4 2 0 0 0 0 2 2 0 1 0 0 1 1 0 0 0 0 0 0 0 0 13 1 1377.6823 O75955;A0A140T9R1;A0A140T9W4 O75955 318 330 FLOT1 Flotillin-1 yes no 3 0.00047537 53.001 By MS/MS By matching 1 2 1.9737 1.7799 89.851 3 Median 1.3296 1.3427 NaN 1 0 Median 4.009 3.5772 98.718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11634000 3186800 8447400 4819000 1692100 3127000 6815200 1494800 5320500 0 0 0 0 0 0 0 0 0 0 0 0 24842 1712 26110 131861;131862;131863 132567 132567 1 MRGQAFVIFK QFGQILDILVSRSLKMRGQAFVIFKEVSSA SRSLKMRGQAFVIFKEVSSATNALRSMQGF K M R F K E 1 1 0 0 0 1 0 1 0 1 0 1 1 2 0 0 0 0 0 1 0 0 10 1 1195.6536 P09012;M0R268;M0R221;M0R2B8;M0QZG7;M0QXK2;M0R0G9;P08579 P09012 51 60 SNRPA;SNRPB2 U1 small nuclear ribonucleoprotein A;U2 small nuclear ribonucleoprotein B no no 2;3 0.0031371 50.878 By MS/MS By matching By matching 3 1 2 1.1728 1.2575 99.987 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1724 1.2693 24.838 3 0 Median 1.3582 1.2023 NaN 1 0 Median 0.366 0.39265 164.96 2 0 Median NaN NaN NaN 0 0 Median 37734000 18574000 19160000 0 0 0 0 0 0 31881000 14387000 17494000 1255200 598910 656300 4597700 3588400 1009300 0 0 0 24843 1910;1904 26111 131864;131865;131866;131867;131868;131869 132568;132569 132569 675 2 MRIESLSSQLSNLQK TSTVNSAREELMESRMRIESLSSQLSNLQK MRIESLSSQLSNLQKESRACLERIQELEDL R M R Q K E 0 1 1 0 0 2 1 0 0 1 3 1 1 0 0 4 0 0 0 0 0 0 15 1 1732.9142 P20700;E9PBF6;A0A0D9SFE5 P20700 298 312 LMNB1 Lamin-B1 yes no 2;3 6.3179E-10 167.71 By MS/MS By MS/MS By MS/MS By matching 4 3 18 8 0.97585 1.0665 26.221 33 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99993 1.0634 22.911 4 0 Median 1.2955 1.1878 59.017 3 1 Median 0.89628 0.99336 17.104 18 2 Median 1.5145 1.3395 16.595 8 0 Median 488880000 250430000 238450000 0 0 0 0 0 0 55181000 28535000 26646000 9433400 5861500 3572000 400470000 206800000 193670000 23798000 9229500 14569000 24844 2084 26112;26113 131870;131871;131872;131873;131874;131875;131876;131877;131878;131879;131880;131881;131882;131883;131884;131885;131886;131887;131888;131889;131890;131891;131892;131893;131894;131895;131896;131897;131898;131899;131900;131901;131902 132570;132571;132572;132573;132574;132575;132576;132577;132578;132579;132580;132581;132582;132583;132584;132585;132586;132587;132588;132589;132590;132591;132592;132593;132594;132595;132596;132597;132598;132599;132600 132596 849 31 MRLEATQLEGVAR LPLSEGGPPLRIAQRMRLEATQLEGVARRM QRMRLEATQLEGVARRMTVETDYCLLLALP R M R A R R 2 2 0 0 0 1 2 1 0 0 2 0 1 0 0 0 1 0 0 1 0 0 13 1 1472.7769 Q96T58 Q96T58 3553 3565 SPEN Msx2-interacting protein yes yes 3 0.0002277 67.019 By MS/MS By matching 3 1 1.087 1.1852 29.918 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97444 1.0709 35.873 3 0 Median NaN NaN NaN 0 0 Median 1.2125 1.3116 NaN 1 0 Median NaN NaN NaN 0 0 Median 12877000 6074000 6803400 0 0 0 0 0 0 8907700 4221500 4686200 0 0 0 3969700 1852500 2117200 0 0 0 24845 3741 26114 131903;131904;131905;131906 132601 132601 1 MRLESLSYQLSGLQK DKAASAAREELKEARMRLESLSYQLSGLQK MRLESLSYQLSGLQKQASAAEDRIRELEEA R M R Q K Q 0 1 0 0 0 2 1 1 0 0 4 1 1 0 0 3 0 0 1 0 0 0 15 1 1751.924 Q03252 Q03252 312 326 LMNB2 Lamin-B2 yes yes 2;3 1.0504E-06 97.214 By MS/MS By matching By MS/MS By matching 4 1 13 2 1.0646 1.1764 21.083 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1023 1.2089 4.575 4 0 Median 2.6094 2.5322 NaN 1 0 Median 1.0305 1.1335 7.6428 11 5 Median 1.5692 1.4009 0.31066 2 0 Median 163790000 75960000 87831000 0 0 0 0 0 0 41365000 19679000 21686000 414000 128180 285830 118780000 54883000 63901000 3227300 1269800 1957500 24846 2709 26115;26116 131907;131908;131909;131910;131911;131912;131913;131914;131915;131916;131917;131918;131919;131920;131921;131922;131923;131924;131925;131926 132602;132603;132604;132605;132606;132607;132608;132609;132610;132611;132612;132613;132614;132615;132616;132617;132618;132619 132606 1397 18 MRPFEGFQR ILDQTNVYGSAQRRKMRPFEGFQRKAIVIC SAQRRKMRPFEGFQRKAIVICPTDEDLKDR K M R Q R K 0 2 0 0 0 1 1 1 0 0 0 0 1 2 1 0 0 0 0 0 0 0 9 1 1166.5655 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1 Q9BUJ2 518 526 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 5.5917E-05 128.38 By MS/MS 1 0.72486 0.78757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72486 0.78757 NaN 1 1 Median NaN NaN NaN 0 0 Median 13382000 8364600 5017600 0 0 0 0 0 0 0 0 0 0 0 0 13382000 8364600 5017600 0 0 0 24847 3840 26117 131927 132620 132620 1 MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR ARRYIGIVKQAGLERMRPGAYSTGYGGYEE GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG R M R G R D 1 2 0 2 0 0 2 8 0 0 2 0 1 2 1 3 3 0 5 0 0 0 32 1 3473.5147 P52597 P52597 231 262 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3 2.5879E-73 142.01 By MS/MS By matching By MS/MS 5 2 1 0.77214 0.83084 16.981 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76957 0.83323 18.654 5 0 Median 0.90408 0.8433 24.174 2 0 Median 0.77473 0.82845 NaN 1 0 Median NaN NaN NaN 0 0 Median 79341000 39296000 40045000 0 0 0 0 0 0 74648000 37011000 37637000 2114200 994670 1119500 2579400 1290100 1289300 0 0 0 24848 2452 26118;26119 131928;131929;131930;131931;131932;131933;131934;131935 132621;132622;132623;132624;132625;132626;132627;132628;132629 132624 1147 9 MRPLTEEETR ______________________________ ______________________________ - M R T R V 0 2 0 0 0 0 3 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 10 1 1260.6132 Q9Y221;J3QLW7 Q9Y221 1 10 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes no 3 0.0039253 41.54 By MS/MS By MS/MS By matching 2 1 2 0.96273 0.95618 7.3185 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91601 0.9169 2.0589 2 0 Median NaN NaN NaN 0 0 Median 0.88368 0.9931 NaN 1 0 Median 1.1765 1.0216 9.3649 2 0 Median 2553500 1250900 1302600 0 0 0 0 0 0 1423700 709030 714650 0 0 0 635730 303000 332740 494060 238850 255200 24849 4365 26120 131936;131937;131938;131939;131940 132630;132631;132632 132632 3 MSAATVLSR GLEEVVQNLLETQGRMSAATVLSREPYMCA LETQGRMSAATVLSREPYMCAQCKTDFTCR R M S S R E 2 1 0 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 9 0 934.4906 Q86YP4 Q86YP4 404 412 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00034914 135.83 By MS/MS By MS/MS 1 1 1.1331 1.1705 8.9295 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0779 1.0989 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1912 1.2468 NaN 1 0 Median NaN NaN NaN 0 0 Median 15056000 7323100 7733100 0 0 0 0 0 0 10267000 4817500 5449100 0 0 0 4789600 2505600 2284000 0 0 0 24850 3309 26121 131941;131942 132633;132634 132633 2 MSAEDIEK MAEGKQHALCVGVMKMSAEDIEKVNKGIGI LCVGVMKMSAEDIEKVNKGIGIENIHYLND K M S E K V 1 0 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 8 0 921.41135 Q9ULC4;A0A3B3IRV3 Q9ULC4 150 157 MCTS1 Malignant T-cell-amplified sequence 1 yes no 2 0.0039199 84.568 By MS/MS By matching By MS/MS By MS/MS 3 1 2 1 1.0759 1.0094 11.298 7 Median 0.9301 0.87861 11.611 3 0 Median 1.2094 1.0509 NaN 1 0 Median 1.1071 1.0518 5.8143 2 0 Median 1.2389 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83388000 37673000 45715000 12332000 5494500 6837400 1217400 556950 660460 57158000 25890000 31268000 12681000 5731500 6949000 0 0 0 0 0 0 24851 4323 26122;26123 131943;131944;131945;131946;131947;131948;131949 132635;132636;132637;132638;132639;132640;132641;132642;132643 132641 1924 9 MSAEDIEKVNK MAEGKQHALCVGVMKMSAEDIEKVNKGIGI GVMKMSAEDIEKVNKGIGIENIHYLNDGLW K M S N K G 1 0 1 1 0 0 2 0 0 1 0 2 1 0 0 1 0 0 0 1 0 0 11 1 1262.6177 Q9ULC4;A0A3B3IRV3 Q9ULC4 150 160 MCTS1 Malignant T-cell-amplified sequence 1 yes no 2;3 0.0019535 55.084 By matching By MS/MS 1 2 1.2871 1.333 23.208 3 Median 1.2871 1.333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4826 1.3343 32.821 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5666000 2134500 3531500 1688700 488030 1200600 0 0 0 0 0 0 3977300 1646500 2330900 0 0 0 0 0 0 24852 4323 26124 131950;131951;131952 132644;132645 132644 2 MSAEINEIIR GIEEALKNRNFTVEKMSAEINEIIRVLQLT FTVEKMSAEINEIIRVLQLTSWDEDAWASK K M S I R V 1 1 1 0 0 0 2 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 10 0 1174.6016 P18206 P18206 237 246 VCL Vinculin yes yes 2 2.749E-05 144.09 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0792 0.97612 136.76 6 Median 1.0127 0.97612 6.2412 2 0 Median 1.0097 0.87973 5.301 2 0 Median 27.366 27.646 NaN 1 0 Median 1.4926 1.2714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74567000 28564000 46003000 40311000 19280000 21031000 18171000 8216000 9955400 14329000 440820 13889000 1754900 626780 1128100 0 0 0 0 0 0 24853 2057 26125;26126 131953;131954;131955;131956;131957;131958 132646;132647;132648 132646 824 2 MSASDPNSSIFLTDTAK LHSTFFPALQGAQTKMSASDPNSSIFLTDT ASDPNSSIFLTDTAKQIKTKVNKHAFSGGR K M S A K Q 2 0 1 2 0 0 0 0 0 1 1 1 1 1 1 4 2 0 0 0 0 0 17 0 1783.8298 P23381;H0YJP3 P23381 350 366 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 2 6.088E-07 86.803 By MS/MS By matching By MS/MS 1 1 1 1.0797 1.0928 13.008 3 Median 0.98042 0.90669 NaN 1 0 Median 1.3206 1.1645 NaN 1 0 Median 1.0797 1.0928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21019000 10099000 10920000 16150000 7742300 8407700 736110 318640 417470 4132800 2038100 2094700 0 0 0 0 0 0 0 0 0 24854 2111 26127 131959;131960;131961 132649;132650;132651 132649 3 MSASILLSK LQDPPGELAVTANSRMSASILLSKLFDDLK VTANSRMSASILLSKLFDDLKCDAERENFH R M S S K L 1 0 0 0 0 0 0 0 0 1 2 1 1 0 0 3 0 0 0 0 0 0 9 0 948.5314 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 509 517 UNC45A Protein unc-45 homolog A yes no 2 0.012656 46.158 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.3272 1.202 43.962 5 Median 1.2347 1.202 NaN 1 0 Median 1.3272 1.1706 NaN 1 0 Median 1.3976 1.4499 NaN 1 0 Median 1.4374 1.2786 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56699 0.48391 NaN 1 0 Median 9967900 4242100 5725800 5955700 2520300 3435400 2532500 1044700 1487800 957030 370560 586470 182750 84730 98020 0 0 0 339810 221780 118040 24855 335 26128 131962;131963;131964;131965;131966 132652 132652 1 MSATFIGNSTAIQELFK NVKTAVCDIPPRGLKMSATFIGNSTAIQEL ATFIGNSTAIQELFKRISEQFTAMFRRKAF K M S F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 P68371;Q13885;Q9BVA1 P68371 363 379 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 1.1089E-31 160.69 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 8 5 3 1 5 1.1551 1.0137 22.686 24 Median 1.1041 1.038 2.2669 2 0 Median 1.1204 0.95181 7.0142 8 2 Median 1.2216 1.166 13.973 5 0 Median 1.3814 1.1881 20.864 3 0 Plateau 1.449 1.4361 NaN 1 0 Median 0.95085 0.75384 33.666 5 1 Median 275830000 125880000 149950000 33972000 15364000 18608000 157060000 72692000 84367000 77986000 34365000 43620000 2887900 1309500 1578500 602500 277000 325500 3321300 1872600 1448600 24856 2634;3849;2844 26129;26130 131967;131968;131969;131970;131971;131972;131973;131974;131975;131976;131977;131978;131979;131980;131981;131982;131983;131984;131985;131986;131987;131988;131989;131990 132653;132654;132655;132656;132657;132658;132659;132660;132661 132659 1298 8 MSATFIGNSTAIQELFKR NVKTAVCDIPPRGLKMSATFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M S K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 18 1 2013.0353 P68371;Q13885;Q9BVA1 P68371 363 380 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 8.5753E-07 79.013 By MS/MS By matching By MS/MS By MS/MS 2 1 1 4 1.3072 1.2362 21.767 8 Median 1.2433 1.2362 0.55316 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1812 1.138 NaN 1 0 Median 2.0749 2.1133 NaN 1 0 Median 1.4904 1.3377 16.426 4 1 Median 154080000 64707000 89376000 82863000 37719000 45144000 0 0 0 0 0 0 1582200 679020 903140 24576000 7683700 16892000 45061000 18625000 26436000 24857 2634;3849;2844 26131;26132 131991;131992;131993;131994;131995;131996;131997;131998 132662;132663;132664;132665;132666;132667;132668 132662 1298 7 MSDEEILEK DALTRNTEKQKKKPKMSDEEILEKLRSIVS QKKKPKMSDEEILEKLRSIVSVGDPKKKYT K M S E K L 0 0 0 1 0 0 3 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 9 0 1092.5009 Q13153;E9PM17;B3KNX7;H0YCM0 Q13153 248 256 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase yes no 2 0.00094944 88.948 By MS/MS By MS/MS By matching 1 1 1 1.2084 1.0281 13.16 3 Median 0.895 0.8387 NaN 1 0 Median 1.2084 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2476 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19661000 9771800 9888900 14189000 7287700 6901800 4583700 2096600 2487100 0 0 0 887510 387580 499940 0 0 0 0 0 0 24858 2791 26133 131999;132000;132001 132669;132670;132671;132672 132670 4 MSDGLFLQK HRSNVTAVHKANIMRMSDGLFLQKCREVAE KANIMRMSDGLFLQKCREVAESCKDIKFNE R M S Q K C 0 0 0 1 0 1 0 1 0 0 2 1 1 1 0 1 0 0 0 0 0 0 9 0 1037.5216 P50213;H0YL72 P50213 206 214 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.0032462 66.429 By MS/MS By MS/MS 2 2 1.2143 1.0651 13.735 4 Median 1.074 0.98829 4.5614 2 0 Median 1.4232 1.2085 11.853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50346000 22204000 28141000 31269000 14172000 17098000 19076000 8032700 11044000 0 0 0 0 0 0 0 0 0 0 0 0 24859 2409 26134 132002;132003;132004;132005 132673;132674;132675;132676 132674 4 MSDLTPVHFTPLDSSVDR PSRTVTCPMSGKPLRMSDLTPVHFTPLDSS LTPVHFTPLDSSVDRVGLITRSERYVCAVT R M S D R V 0 1 0 3 0 0 0 0 1 0 2 0 1 1 2 3 2 0 0 2 0 0 18 0 2015.9622 Q9Y314;M0R3B2;A0A075B6F9 Q9Y314 194 211 NOSIP Nitric oxide synthase-interacting protein yes no 3 1.4894E-06 71.594 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.72233 0.60723 33.366 6 Median 0.3336 0.32333 NaN 1 0 Median 0.70807 0.60515 NaN 1 0 Median 0.82502 0.80578 1.1954 2 0 Median 0.72233 0.60723 0.33375 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25634000 14130000 11504000 1680500 1286700 393730 661980 359200 302780 21006000 11231000 9775000 2285700 1253000 1032700 0 0 0 0 0 0 24860 4401 26135;26136 132006;132007;132008;132009;132010;132011 132677;132678;132679;132680;132681;132682 132679 1968 6 MSEADGLR ______________________________ ______________________________ - M S L R Q 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 8 0 877.39637 Q9HDC9 Q9HDC9 1 8 APMAP Adipocyte plasma membrane-associated protein yes yes 2 0.029536 40.103 By MS/MS 1 0.99365 0.92813 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99365 0.92813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 698760 358520 340240 0 0 0 0 0 0 698760 358520 340240 0 0 0 0 0 0 0 0 0 24861 4039 26137 132012 132683 132683 1 MSEQQDLER LGFTVGRYLAKKKMRMSEQQDLERNADTLP AKKKMRMSEQQDLERNADTLPDQEELIQSA R M S E R N 0 1 0 1 0 2 2 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 9 0 1134.4975 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 771 779 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.00094944 88.948 By MS/MS By MS/MS 1 1 1.3462 1.2287 0.28729 2 Median 1.2266 1.2263 NaN 1 0 Median 1.4774 1.2312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2029200 851060 1178100 791990 353150 438840 1237200 497910 739310 0 0 0 0 0 0 0 0 0 0 0 0 24862 3116 26138 132013;132014 132684;132685;132686 132686 3 MSFGLLR VIVTRSGAILPKPVKMSFGLLRVFSIVIPF AILPKPVKMSFGLLRVFSIVIPFLYVGTLI K M S L R V 0 1 0 0 0 0 0 1 0 0 2 0 1 1 0 1 0 0 0 0 0 0 7 0 822.44219 Q9H4I9 Q9H4I9 63 69 SMDT1 Essential MCU regulator, mitochondrial yes yes 2 0.030534 62.714 By matching By MS/MS By matching 1 1 1 1.107 1.1066 14.444 3 Median 1.0395 0.97656 NaN 1 0 Median 1.6104 1.3026 NaN 1 0 Median 1.107 1.1066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3230100 1423100 1807000 1549600 812900 736720 1134100 431020 703050 546440 179190 367250 0 0 0 0 0 0 0 0 0 24863 3965 26139 132015;132016;132017 132687 132687 1859 1 MSFYNELYK SGKSTAKKVYSFLDKMSFYNELYKHKPHDV YSFLDKMSFYNELYKHKPHDVISHEDGTLW K M S Y K H 0 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 2 0 0 0 9 0 1193.5427 Q5SRE5 Q5SRE5 471 479 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.0087269 49.813 By matching By matching By MS/MS By matching 2 2 3 1 0.98541 0.96895 15.037 8 Median 1.1128 1.0745 26.802 2 0 Median 1.0856 0.95401 8.575 2 0 Median 0.94049 1.0419 9.0457 3 0 Plateau 1.373 1.238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15754000 8334500 7419400 2762200 1182300 1579800 957620 494000 463610 11622000 6489900 5132400 411900 168340 243570 0 0 0 0 0 0 24864 3074 26140 132018;132019;132020;132021;132022;132023;132024;132025 132688;132689 132689 2 MSGDLSSNVTVSVTSSTISSNVASK EIATYRKLLEGEECRMSGDLSSNVTVSVTS VSVTSSTISSNVASKAAFGGSGGRGSSSGG R M S S K A 1 0 2 1 0 0 0 1 0 1 1 1 1 0 0 9 3 0 0 4 0 0 25 0 2457.1905 CON__P35908;CON__P35908v2;P35908 CON__P35908 497 521 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 6.6277E-15 78.202 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5951400 5951400 0 0 0 0 0 0 0 0 0 0 0 0 0 5951400 5951400 0 0 0 0 + 24865 764;765 26141 132026 132690 132690 286 1 MSGECAPNVSVSVSTSHTTISGGGSR EIATYRTLLEGEESRMSGECAPNVSVSVST SVSTSHTTISGGGSRGGGGGGYGSGGSSYG R M S S R G 1 1 1 0 1 0 1 4 1 1 0 0 1 0 1 7 3 0 0 3 0 0 26 0 2564.1595 P04264;CON__P04264 P04264 493 518 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 8.8099E-132 202.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 11 1 6 8 0.074372 0.069763 201.23 2 Median NaN NaN NaN 0 0 Median 0.019692 0.016813 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28089 0.28946 NaN 1 1 Median NaN NaN NaN 0 0 Median 447430000 446850000 581450 57233000 57233000 0 211600000 211540000 53133 5841100 5841100 0 15504000 15504000 0 157250000 156730000 528310 0 0 0 + 24866 1848 26142;26143 132027;132028;132029;132030;132031;132032;132033;132034;132035;132036;132037;132038;132039;132040;132041;132042;132043;132044;132045;132046;132047;132048;132049;132050;132051;132052;132053;132054;132055;132056;132057;132058 132691;132692;132693;132694;132695;132696;132697;132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711;132712;132713;132714;132715;132716;132717;132718;132719;132720;132721;132722;132723;132724;132725;132726;132727 132725 606 37 MSGGWELELNGTEAK IKEERKIQKHKTLPKMSGGWELELNGTEAK MSGGWELELNGTEAKLVRKVAGEKITVTFN K M S A K L 1 0 1 0 0 0 3 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 15 0 1620.7454 Q07021;I3L3Q7;I3L3B0 Q07021 105 119 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2 1.9295E-09 133.07 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 1 1 1 2 1.3345 1.1478 9.5666 10 Median 1.1326 1.0776 4.8884 3 0 Median 1.4605 1.2266 10.425 2 1 Median 1.1541 1.0818 NaN 1 0 Median 1.48 1.2202 NaN 1 0 Median 1.3144 1.3496 NaN 1 0 Median 1.4411 1.2005 5.3204 2 0 Median 117430000 51045000 66382000 89030000 39567000 49464000 11860000 4518800 7341300 14247000 5975700 8271500 512470 213630 298840 931830 417080 514750 845190 353210 491980 24867 2729 26144;26145 132059;132060;132061;132062;132063;132064;132065;132066;132067;132068 132728;132729;132730;132731;132732;132733;132734 132732 1412 7 MSGKHDVGAYMLMYK DPRAPPCEYKDWLTKMSGKHDVGAYMLMYK MSGKHDVGAYMLMYKGANRTETVTSFRKRE K M S Y K G 1 0 0 1 0 0 0 2 1 0 1 2 3 0 0 1 0 0 2 1 0 0 15 1 1729.799 P78527 P78527 3846 3860 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 3.9274E-05 68.044 By MS/MS By MS/MS By matching 1 4 1 1.0405 1.1838 43.884 6 Median 0.96619 1.0519 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0405 1.1838 6.3899 4 2 Median NaN NaN NaN 0 0 Median 2.9684 3.3266 NaN 1 0 Median NaN NaN NaN 0 0 Median 116360000 57256000 59101000 22695000 12846000 9848700 0 0 0 89610000 43545000 46064000 0 0 0 4052900 865190 3187700 0 0 0 24868 2647 26146;26147 132069;132070;132071;132072;132073;132074 132735;132736;132737;132738;132739;132740 132738 1317;1318;1327 6 MSGLHISGGQSVLEPIK SSNNRSFFSVESGTKMSGLHISGGQSVLEP GLHISGGQSVLEPIKSVNQSINQTVSQTMS K M S I K S 0 0 0 0 0 1 1 3 1 2 2 1 1 0 1 3 0 0 0 1 0 0 17 0 1751.924 Q14966 Q14966 293 309 ZNF638 Zinc finger protein 638 yes yes 3 0.00029601 38.093 By MS/MS 1 0.82033 0.90526 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82033 0.90526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11786000 6692300 5093300 0 0 0 0 0 0 11786000 6692300 5093300 0 0 0 0 0 0 0 0 0 24869 2903 26148 132075 132741;132742 132741 2 MSIHLIHMR VAYGLYKLKSRGNTKMSIHLIHMRVAAQGF SRGNTKMSIHLIHMRVAAQGFVVGAMTVGM K M S M R V 0 1 0 0 0 0 0 0 2 2 1 0 2 0 0 1 0 0 0 0 0 0 9 0 1136.5947 Q9Y241;C9JAW5;C9JNU6;A8MV81 Q9Y241 56 64 HIGD1A;HIGD1C HIG1 domain family member 1A, mitochondrial;HIG1 domain family member 1C yes no 2 0.00065105 107.01 By MS/MS 1 1.5409 1.3125 NaN 1 Median NaN NaN NaN 0 0 Median 1.5409 1.3125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20086000 7611700 12474000 0 0 0 20086000 7611700 12474000 0 0 0 0 0 0 0 0 0 0 0 0 24870 4371 26149 132076 132743 132743 1 MSINAEEVVVGDLVEVK NMVPQQALVIRNGEKMSINAEEVVVGDLVE INAEEVVVGDLVEVKGGDRIPADLRIISAN K M S V K G 1 0 1 1 0 0 3 1 0 1 1 1 1 0 0 1 0 0 0 5 0 0 17 0 1829.9445 P05023 P05023 178 194 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 2.2015E-13 115.8 By MS/MS 3 1.1134 0.9876 13.719 3 Median NaN NaN NaN 0 0 Median 1.1134 0.9876 13.719 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17174000 7641300 9532400 0 0 0 17174000 7641300 9532400 0 0 0 0 0 0 0 0 0 0 0 0 24871 1857 26150 132077;132078;132079 132744;132745 132744 2 MSISEGTVSDK QIDVSQFGSFKEDTKMSISEGTVSDKSATP EDTKMSISEGTVSDKSATPVDEGVAEDTYS K M S D K S 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 3 1 0 0 1 0 0 11 0 1152.5333 P46821 P46821 1519 1529 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00014771 88.681 By MS/MS By matching By MS/MS By matching 1 1 1 1 2.2495 2.4221 40.893 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2495 2.4221 NaN 1 0 Median 1.9395 1.8657 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2676 1.0864 NaN 1 0 Median 8188900 2247000 5941900 0 0 0 0 0 0 4752000 1403700 3348200 2072900 408320 1664600 0 0 0 1364000 434900 929120 24872 2347 26151 132080;132081;132082;132083 132746;132747 132747 2 MSIYQAMWK GVLVPAKDQPGRQEKMSIYQAMWKGVLRPG PGRQEKMSIYQAMWKGVLRPGTALVLLEAQ K M S W K G 1 0 0 0 0 1 0 0 0 1 0 1 2 0 0 1 0 1 1 0 0 0 9 0 1156.5409 P58107;A0A075B730 P58107 2243 2251 EPPK1 Epiplakin yes no 2 0.00078048 98.299 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 8 2 4 3 1.3743 1.3225 29.762 24 Median 1.3081 1.3091 7.6539 7 0 Median 1.4317 1.2521 30.079 8 0 Median 0.91529 1.0288 92.395 2 0 Median NaN NaN NaN 0 0 Median 1.5071 1.5024 20.059 4 0 Median 1.5331 1.3184 8.9657 3 0 Plateau 321740000 134150000 187590000 209500000 85431000 124070000 92664000 40820000 51844000 3185500 1272400 1913100 0 0 0 14917000 5987900 8928700 1473300 639060 834210 24873 2520 26152;26153 132084;132085;132086;132087;132088;132089;132090;132091;132092;132093;132094;132095;132096;132097;132098;132099;132100;132101;132102;132103;132104;132105;132106;132107 132748;132749;132750;132751;132752;132753;132754;132755;132756;132757;132758;132759;132760 132753 1199;1200 13 MSLIDLAGSER QDRVPGLTQAVQVAKMSLIDLAGSERASST QVAKMSLIDLAGSERASSTHAKGERLREGA K M S E R A 1 1 0 1 0 0 1 1 0 1 2 0 1 0 0 2 0 0 0 0 0 0 11 0 1190.5965 A0A494BYR6;Q86Y91;Q8NI77 A0A494BYR6 259 269 KIF18B;KIF18A Kinesin-like protein KIF18B;Kinesin-like protein KIF18A yes no 2 0.0037154 71.614 By MS/MS 1 1.2481 1.3339 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2481 1.3339 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4572100 2012400 2559700 0 0 0 0 0 0 4572100 2012400 2559700 0 0 0 0 0 0 0 0 0 24874 450 26154 132108 132761 132761 1 MSLIEEEGSKR RIVALFPKDVDRLRRMSLIEEEGSKRINMA RLRRMSLIEEEGSKRINMAHLCIVGSHAVN R M S K R I 0 1 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 0 0 0 0 11 1 1277.6286 P06737;E9PK47 P06737 429 439 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 0.00022648 113.22 By MS/MS By MS/MS 3 2 1.0091 1.0331 12.406 4 Median 0.99474 1.0331 6.2042 2 1 Median 1.1229 1.1188 18.97 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14944000 6741600 8202400 5874600 2725100 3149500 9069400 4016500 5052900 0 0 0 0 0 0 0 0 0 0 0 0 24875 1874 26155 132109;132110;132111;132112;132113 132762;132763;132764;132765;132766;132767;132768 132765 7 MSLIINTFYSNK ______________________________ ______________________________ - M S N K E 0 0 2 0 0 0 0 0 0 2 1 1 1 1 0 2 1 0 1 0 0 0 12 0 1429.7275 Q58FF6 Q58FF6 1 12 HSP90AB4P Putative heat shock protein HSP 90-beta 4 yes yes 2 0.0012241 55.567 By matching By MS/MS 1 1 0.59131 0.56374 44.737 2 Median 0.40072 0.41086 NaN 1 0 Median 0.87253 0.77351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2431300 1284500 1146800 658030 467160 190880 1773300 817300 955970 0 0 0 0 0 0 0 0 0 0 0 0 24876 3039 26156 132114;132115 132769;132770 132770 2 MSLPDVDLDLKGPK GPKFKMPEMHFRAPKMSLPDVDLDLKGPKM KMSLPDVDLDLKGPKMKGNVDISAPKIEGE K M S P K M 0 0 0 3 0 0 0 1 0 0 3 2 1 0 2 1 0 0 0 1 0 0 14 1 1526.8014 Q09666 Q09666 1067 1080 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0011778 68.069 By MS/MS By MS/MS By MS/MS 1 1 1 1.2026 1.3097 95.445 3 Median 1.2026 1.3097 NaN 1 1 Median 0.89949 0.85671 NaN 1 1 Median 4.6889 5.3087 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41808000 12781000 29027000 15872000 7017900 8854500 4616200 2337400 2278900 21319000 3425200 17894000 0 0 0 0 0 0 0 0 0 24877 2749 26157;26158 132116;132117;132118 132771;132772;132773 132771 1465 3 MSMKEVDEQMLNVQNK RHGRYLTVAAVFRGRMSMKEVDEQMLNVQN SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT R M S N K N 0 0 2 1 0 2 2 0 0 0 1 2 3 0 0 1 0 0 0 2 0 0 16 1 1922.89 Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 321 336 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 5.8473E-14 178.32 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 2 1 4 3 3 1.2534 1.1679 22.886 18 Median 1.1184 1.0685 5.2752 5 0 Median 1.0032 0.94623 8.0581 2 0 Median 1.4231 1.4899 NaN 1 0 Median 1.3301 1.2634 14.669 4 0 Median 1.5952 1.6794 17.263 3 0 Median 1.3275 1.1832 21.229 3 0 Median 172240000 73033000 99209000 111490000 49809000 61683000 1535600 721600 814040 7941100 2550700 5390400 27718000 11549000 16169000 19324000 6423400 12901000 4230800 1979100 2251700 24878 2634;1887;3849;2844 26159;26160;26161 132119;132120;132121;132122;132123;132124;132125;132126;132127;132128;132129;132130;132131;132132;132133;132134;132135;132136 132774;132775;132776;132777;132778;132779;132780;132781;132782;132783;132784;132785 132784 655;657;658 12 MSNALAIQVDSEGK IHVAQYPLDMGRKKKMSNALAIQVDSEGKI KMSNALAIQVDSEGKIKYDAIARQGQSKDK K M S G K I 2 0 1 1 0 1 1 1 0 1 1 1 1 0 0 2 0 0 0 1 0 0 14 0 1461.7133 Q13573;G3V3A4;G3V5R3 Q13573 82 95 SNW1 SNW domain-containing protein 1 yes no 2 1.2903E-05 88.187 By MS/MS By MS/MS By MS/MS 1 1 1 1.1469 0.98279 12.031 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1594 1.1816 NaN 1 0 Median 1.1469 0.98279 NaN 1 0 Median 0.9897 0.94242 NaN 1 0 Median NaN NaN NaN 0 0 Median 17169000 8164800 9004300 0 0 0 0 0 0 9948200 4458400 5489800 1229800 486050 743760 5991100 3220300 2770700 0 0 0 24879 2826 26162;26163 132137;132138;132139 132786;132787;132788;132789;132790 132786 1520 5 MSPYKDILETHLR AHLPDVCVNLMKALKMSPYKDILETHLREK LKMSPYKDILETHLREKITAQSIEELCAVN K M S L R E 0 1 0 1 0 0 1 0 1 1 2 1 1 0 1 1 1 0 1 0 0 0 13 1 1601.8236 P78527 P78527 1408 1420 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3;4 6.8119E-07 133.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 2 7 2 2 1 0.85997 0.93561 18.292 21 Median 0.85997 0.88041 17.012 7 1 Median 1.3089 1.2241 7.6663 2 0 Median 0.79588 0.9259 16.96 7 1 Median 1.2247 1.1614 0.56975 2 0 Median 0.88898 1.0081 22.056 2 0 Median 1.2226 1.0474 NaN 1 0 Median 470260000 253060000 217190000 157710000 84099000 73614000 29994000 13841000 16152000 260220000 143890000 116330000 2972100 1231900 1740300 19239000 9944300 9294900 120640 58399 62240 24880 2647 26164;26165 132140;132141;132142;132143;132144;132145;132146;132147;132148;132149;132150;132151;132152;132153;132154;132155;132156;132157;132158;132159;132160 132791;132792;132793;132794;132795;132796;132797;132798;132799;132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812;132813;132814;132815;132816;132817;132818;132819;132820 132812 1328 30 MSQEEVNVFR PFRKNFYVEVPELAKMSQEEVNVFRLEMEG PELAKMSQEEVNVFRLEMEGITVKGKGCPK K M S F R L 0 1 1 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 10 0 1237.5761 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 345 354 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 2.3011E-05 145.63 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1774 1.1347 34.244 5 Median 1.1774 1.1347 NaN 1 0 Median 1.1342 0.95283 NaN 1 0 Median 1.1942 1.3128 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.748 2.0599 NaN 1 0 Median 1.045 0.85778 NaN 1 0 Median 40740000 18284000 22457000 9756700 4644800 5112000 6751700 2914700 3837100 21383000 9488100 11894000 0 0 0 2139100 923650 1215500 710030 312440 397590 24881 3216 26166 132161;132162;132163;132164;132165 132821;132822;132823;132824;132825 132822 5 MSQNFHTSYAETLGK ELGSSVKEARLYEGKMSQNFHTSYAETLGK MSQNFHTSYAETLGKLETQYCKLKETSSFR K M S G K L 1 0 1 0 0 1 1 1 1 0 1 1 1 1 0 2 2 0 1 0 0 0 15 0 1712.7828 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 641 655 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 9.9611E-05 59.862 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2675 1.1218 21.385 5 Median 1.1055 1.1079 NaN 1 1 Median 1.2718 1.1128 1.1435 2 0 Median 1.2034 1.2938 NaN 1 0 Median 1.9362 1.8188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31116000 14334000 16782000 12807000 5189200 7618200 11871000 5919700 5951300 5548800 2955300 2593500 888870 269960 618910 0 0 0 0 0 0 24882 1220 26167 132166;132167;132168;132169;132170 132826;132827;132828 132828 3 MSQSIIVSGESGAGK FAIADKAFRDMKVLKMSQSIIVSGESGAGK MSQSIIVSGESGAGKTENTKFVLRYLTESY K M S G K T 1 0 0 0 0 1 1 3 0 2 0 1 1 0 0 4 0 0 0 1 0 0 15 0 1449.7133 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 143 157 MYO6 Unconventional myosin-VI yes no 2 1.6487E-07 97.911 By MS/MS By MS/MS 1 1 1.4597 1.3279 22.198 2 Median 1.1646 1.135 NaN 1 0 Median 1.8295 1.5536 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11582000 4823800 6758600 5426100 2672600 2753500 6156300 2151100 4005200 0 0 0 0 0 0 0 0 0 0 0 0 24883 164 26168 132171;132172 132829;132830;132831 132830 3 MSQSIIVSGESGAGKTENTK FAIADKAFRDMKVLKMSQSIIVSGESGAGK IVSGESGAGKTENTKFVLRYLTESYGTGQD K M S T K F 1 0 1 0 0 1 2 3 0 2 0 2 1 0 0 4 2 0 0 1 0 0 20 1 2022.9892 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 143 162 MYO6 Unconventional myosin-VI yes no 3 0.0092481 30.587 By MS/MS 2 0.91212 0.96138 1.5024 2 Median 0.91212 0.96138 1.5024 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7605600 4141200 3464400 7605600 4141200 3464400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24884 164 26169 132173;132174 132832;132833 132833 2 MSQVAPSLSALIGEAVGAR LSEYRQSLHTYLRSKMSQVAPSLSALIGEA APSLSALIGEAVGARLIAHAGSLTNLAKYP K M S A R L 4 1 0 0 0 1 1 2 0 1 2 0 1 0 1 3 0 0 0 2 0 0 19 0 1855.9826 O00567;A0A494C128;H0YDU4;H0Y653 O00567 289 307 NOP56 Nucleolar protein 56 yes no 2;3 5.1346E-10 95.631 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 5 2 0.85762 0.86425 22.147 13 Median 1.0956 1.1117 NaN 1 0 Median 0.71428 0.6158 NaN 1 0 Median 0.8279 0.85814 7.9297 2 0 Median 1.2263 1.0633 15.218 2 0 Median 0.84655 0.85354 6.9886 5 0 Median 0.89549 0.74547 48.124 2 0 Median 58322000 29880000 28441000 1434000 705630 728330 1267500 493170 774340 12723000 6482800 6240100 452560 190630 261920 42093000 21831000 20262000 351710 177070 174640 24885 1472 26170;26171 132175;132176;132177;132178;132179;132180;132181;132182;132183;132184;132185;132186;132187 132834;132835;132836;132837;132838;132839;132840 132835 473 7 MSQVPAPVPLMSLR ARPPPSMSAAGLAARMSQVPAPVPLMSLRT RMSQVPAPVPLMSLRTAPAANLASRIPAAS R M S L R T 1 1 0 0 0 1 0 0 0 0 2 0 2 0 3 2 0 0 0 2 0 0 14 0 1524.8156 Q9UQ35 Q9UQ35 2208 2221 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0004805 70.488 By MS/MS By matching By MS/MS By MS/MS 4 1 1 2 0.82691 0.79766 42.579 8 Median 0.83929 0.80415 57.361 4 2 Median 0.97372 0.83975 NaN 1 0 Median 0.68861 0.75768 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7022 0.74279 52.082 2 0 Median NaN NaN NaN 0 0 Median 43840000 24633000 19207000 35469000 20118000 15351000 708960 356660 352300 2849800 1588700 1261000 0 0 0 4812100 2569800 2242300 0 0 0 24886 4359 26172 132188;132189;132190;132191;132192;132193;132194;132195 132841;132842;132843;132844;132845;132846 132841 6 MSQYLDSLK VYLKGVHPKFPEGGKMSQYLDSLKVGDVVE FPEGGKMSQYLDSLKVGDVVEFRGPSGLLT K M S L K V 0 0 0 1 0 1 0 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 9 0 1083.527 Q9UHQ9;H7C0R7 Q9UHQ9 131 139 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.005828 56.434 By MS/MS By matching 1 1 1.9907 1.7631 29.658 2 Median 1.56 1.4296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5402 2.1745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15243000 6597500 8645800 14709000 6433200 8276000 0 0 0 0 0 0 534090 164310 369780 0 0 0 0 0 0 24887 4280 26173 132196;132197 132847;132848 132848 2 MSSEVVDSNPYSR PRSGDGGGGRVRIEKMSSEVVDSNPYSRLM EKMSSEVVDSNPYSRLMALKRMGIVSDYEK K M S S R L 0 1 1 1 0 0 1 0 0 0 0 0 1 0 1 4 0 0 1 2 0 0 13 0 1469.6457 E7EWE1;E7EQ61;Q9GZZ9 E7EWE1 43 55 UBA5 Ubiquitin-like modifier-activating enzyme 5 yes no 2 2.6283E-05 124.1 By MS/MS By MS/MS 1 1 0.87637 0.79071 4.3728 2 Median 0.85423 0.81554 NaN 1 0 Median 0.89909 0.76664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15040000 8459000 6581000 11466000 6674700 4791200 3574100 1784300 1789800 0 0 0 0 0 0 0 0 0 0 0 0 24888 875 26174 132198;132199 132849;132850 132849 2 MSSPEDDSDTKR PAPKESSTSEGADQKMSSPEDDSDTKRLSK DQKMSSPEDDSDTKRLSKEEKGRSSCGRNF K M S K R L 0 1 0 3 0 0 1 0 0 0 0 1 1 0 1 3 1 0 0 0 0 0 12 1 1366.5671 Q15424 Q15424 382 393 SAFB Scaffold attachment factor B1 yes yes 3 0.00030909 54.7 By MS/MS By matching By MS/MS 3 1 3 0.77996 0.85939 8.4427 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73698 0.85095 11.524 3 0 Median 0.9832 0.94487 NaN 1 0 Median 0.77996 0.85939 4.3764 3 0 Median NaN NaN NaN 0 0 Median 6323500 3452000 2871500 0 0 0 0 0 0 935160 514080 421070 214380 110660 103730 5174000 2827300 2346700 0 0 0 24889 2951 26175 132200;132201;132202;132203;132204;132205;132206 132851;132852;132853;132854;132855;132856 132855 6 MSSSEEESKIDLLDR VHLMNPMVPGLTGSKMSSSEEESKIDLLDR MSSSEEESKIDLLDRKEDVKKKLKKAFCEP K M S D R K 0 1 0 2 0 0 3 0 0 1 2 1 1 0 0 4 0 0 0 0 0 0 15 1 1737.8091 P54577;A0A0C4DGZ5 P54577 223 237 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 0.00075235 38.093 By MS/MS By matching 1 1 1.1458 1.0992 14.939 2 Median 1.2178 1.2217 NaN 1 0 Median 1.0779 0.98901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13389000 6015300 7373900 10884000 4789000 6095100 2505100 1226400 1278800 0 0 0 0 0 0 0 0 0 0 0 0 24890 2482 26176 132207;132208 132857 132857 1 MSSSEEESKIDLLDRK VHLMNPMVPGLTGSKMSSSEEESKIDLLDR SSSEEESKIDLLDRKEDVKKKLKKAFCEPG K M S R K E 0 1 0 2 0 0 3 0 0 1 2 2 1 0 0 4 0 0 0 0 0 0 16 2 1865.9041 P54577;A0A0C4DGZ5 P54577 223 238 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 4.6332E-07 86.378 By MS/MS 1 1.0327 1.1179 NaN 1 Median 1.0327 1.1179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10247000 4654000 5592800 10247000 4654000 5592800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24891 2482 26177 132209 132858 132858 1 MSSTFIGNSTAIQELFKR NVKVAVCDIPPRGLKMSSTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M S K R I 1 1 1 0 0 1 1 1 0 2 1 1 1 2 0 3 2 0 0 0 0 0 18 1 2029.0303 A0A0B4J269;Q13509 A0A0B4J269 710 727 TUBB3 Tubulin beta-3 chain yes no 3 2.3046E-06 55.33 By matching By MS/MS 1 1 1.7656 1.8592 25.53 2 Median 1.4535 1.5521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1446 2.2271 NaN 1 0 Median NaN NaN NaN 0 0 Median 2624600 930820 1693800 573630 317510 256120 0 0 0 0 0 0 0 0 0 2051000 613310 1437700 0 0 0 24892 216 26178 132210;132211 132859 132859 1 MSSTIFSTGGK DNGELEDKPPAPPVRMSSTIFSTGGKDPLS PPVRMSSTIFSTGGKDPLSANHSLKPLPSV R M S G K D 0 0 0 0 0 0 0 2 0 1 0 1 1 1 0 3 2 0 0 0 0 0 11 0 1114.5329 Q13177 Q13177 18 28 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 2 0.0076573 60.518 By MS/MS 2 1.3191 1.1386 3.6165 2 Median NaN NaN NaN 0 0 Median 1.3191 1.1386 3.6165 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4755600 1885300 2870300 0 0 0 4755600 1885300 2870300 0 0 0 0 0 0 0 0 0 0 0 0 24893 2794 26179 132212;132213 132860;132861 132861 2 MSSYAFFVQTCR ______________________________ RGKMSSYAFFVQTCREEHKKKHPDASVNFS K M S C R E 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 2 1 0 1 1 0 0 12 0 1495.6588 P09429;Q5T7C4;B2RPK0;P26583;D6R9A6 P09429 13 24 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 no no 2 4.5586E-06 111.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 3 1 1.2067 1.0543 28.407 13 Median 1.1064 1.0543 7.0697 3 0 Median 1.2239 1.0395 17.377 3 0 Median 0.98926 0.94734 7.2512 3 0 Median 1.3072 1.0821 51.74 3 0 Median NaN NaN NaN 0 0 Median 1.7617 1.4559 NaN 1 0 Median 31472000 14157000 17315000 15204000 6534800 8669200 3303500 1588900 1714600 9334000 4435200 4898700 3435700 1527600 1908200 0 0 0 194560 70227 124330 24894 1915;2146 26180;26181 132214;132215;132216;132217;132218;132219;132220;132221;132222;132223;132224;132225;132226 132862;132863;132864;132865;132866;132867;132868;132869;132870;132871;132872 132863 694 11 MSSYAFFVQTCREEHKK ______________________________ SYAFFVQTCREEHKKKHPDASVNFSEFSKK K M S K K K 1 1 0 0 1 1 2 0 1 0 0 2 1 2 0 2 1 0 1 1 0 0 17 2 2146.9928 P09429;Q5T7C4;B2RPK0;P26583;D6R9A6 P09429 13 29 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 no no 3 8.8559E-05 46.926 By matching By MS/MS 1 1 0.74279 0.6193 79.919 2 Median NaN NaN NaN 0 0 Median 0.41762 0.35194 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3212 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6167900 2866800 3301100 0 0 0 1812500 1156100 656380 0 0 0 4355400 1710600 2644700 0 0 0 0 0 0 24895 1915;2146 26182 132227;132228 132873 132873 694 1 MSTEEIIQR WDEAEQDGIGEEVLKMSTEEIIQRTRLLDS GEEVLKMSTEEIIQRTRLLDSEIKIMKSEV K M S Q R T 0 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 9 0 1105.5438 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PN50;E9PLG2 R4GNH3 20 28 PSMC3 26S protease regulatory subunit 6A yes no 2 0.00052246 107.66 By MS/MS By MS/MS By MS/MS 2 2 1 0.92425 0.77615 24.489 5 Median 1.0037 0.94536 1.0707 2 2 Median 0.90854 0.76299 2.418 2 2 Median 0.525 0.51952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104280000 53647000 50634000 54268000 26509000 27759000 41011000 21328000 19683000 9003200 5810900 3192300 0 0 0 0 0 0 0 0 0 24896 2050 26183 132229;132230;132231;132232;132233 132874;132875;132876;132877;132878 132877 5 MSTGTFVVSQPLNYR ______________________________ MSTGTFVVSQPLNYRGGARVEPADASGTEK - M S Y R G 0 1 1 0 0 1 0 1 0 0 1 0 1 1 1 2 2 0 1 2 0 0 15 0 1698.8399 P49189 P49189 1 15 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 3.3742E-05 84.658 By MS/MS 1 0.80571 0.77874 NaN 1 Median 0.80571 0.77874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7780000 4296100 3483900 7780000 4296100 3483900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24897 2372 26184 132234 132879;132880 132880 2 MSTSPEAFLALR ESKVPADLLKRAFVRMSTSPEAFLALRSHF FVRMSTSPEAFLALRSHFASSHALICISHW R M S L R S 2 1 0 0 0 0 1 0 0 0 2 0 1 1 1 2 1 0 0 0 0 0 12 0 1321.67 P78527 P78527 3890 3901 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.2214E-09 178.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 5 5 4 0.79681 0.8297 22.84 18 Median 0.6747 0.64169 28.485 4 2 Median 1.1111 0.88916 NaN 1 0 Median 0.75343 0.82828 3.7178 5 0 Median 1.3076 1.1417 5.6233 4 0 Median 0.7915 0.79397 10.031 4 1 Median NaN NaN NaN 0 0 Median 407740000 223340000 184400000 113720000 63518000 50202000 20800000 10016000 10784000 234920000 129070000 105850000 9783500 4231100 5552400 28516000 16502000 12014000 0 0 0 24898 2647 26185;26186 132235;132236;132237;132238;132239;132240;132241;132242;132243;132244;132245;132246;132247;132248;132249;132250;132251;132252;132253 132881;132882;132883;132884;132885;132886;132887;132888;132889;132890;132891;132892;132893;132894;132895;132896;132897;132898;132899;132900;132901;132902;132903;132904;132905;132906;132907;132908;132909;132910;132911;132912;132913;132914;132915;132916 132885 1329 36 MSVAEQVDYVIK VKAKLEGRDVDPNRRMSVAEQVDYVIKEAT NRRMSVAEQVDYVIKEATNLDNLAQLYEGW R M S I K E 1 0 0 1 0 1 1 0 0 1 0 1 1 0 0 1 0 0 1 3 0 0 12 0 1380.6959 J3KRA9;Q96Q15 J3KRA9 3521 3532 SMG1 Serine/threonine-protein kinase SMG1 yes no 2;3 0.021045 50.805 By MS/MS 2 0.56094 0.57937 90.915 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56094 0.57937 90.915 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38936000 18669000 20267000 0 0 0 0 0 0 38936000 18669000 20267000 0 0 0 0 0 0 0 0 0 24899 1325 26187 132254;132255 132917;132918 132917 2 MSVDAVEIETLR AAEMHKMKSTTQANRMSVDAVEIETLRKTV ANRMSVDAVEIETLRKTVEDYFCFCYGKAL R M S L R K 1 1 0 1 0 0 2 0 0 1 1 0 1 0 0 1 1 0 0 2 0 0 12 0 1361.6861 P78347;A0A494C1K3 P78347 102 113 GTF2I General transcription factor II-I yes no 2 1.7424E-05 97.456 By MS/MS By matching 1 1 0.63927 0.70288 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63927 0.70288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13300000 7331300 5968300 0 0 0 0 0 0 13265000 7307200 5957500 0 0 0 0 0 0 34940 24118 10822 24900 2642 26188 132256;132257 132919 132919 1 MSVDAVEIETLRK AAEMHKMKSTTQANRMSVDAVEIETLRKTV NRMSVDAVEIETLRKTVEDYFCFCYGKALG R M S R K T 1 1 0 1 0 0 2 0 0 1 1 1 1 0 0 1 1 0 0 2 0 0 13 1 1489.781 P78347;A0A494C1K3 P78347 102 114 GTF2I General transcription factor II-I yes no 2;3 4.2363E-16 150.04 By MS/MS 3 0.72434 0.82141 11.934 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72434 0.82141 11.934 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47287000 26688000 20599000 0 0 0 0 0 0 47287000 26688000 20599000 0 0 0 0 0 0 0 0 0 24901 2642 26189;26190 132258;132259;132260 132920;132921;132922;132923 132923 1302 4 MSVEADINGLR ADDFRTKFETEQALRMSVEADINGLRRVLD QALRMSVEADINGLRRVLDELTLARTDLEM R M S L R R 1 1 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 11 0 1203.5918 P02533;CON__P02533;CON__Q6IFX2;CON__P08727;P08727;K7EMS3;C9JM50 CON__P08727 177 187 KRT14;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19 no no 2 0.00011287 133.57 By matching By MS/MS By MS/MS 1 2 2 0.89019 0.97676 89.321 5 Median 0.1278 0.14199 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79406 0.86782 16.723 2 0 Median NaN NaN NaN 0 0 Median 1.019 1.1461 21.484 2 1 Median NaN NaN NaN 0 0 Median 62839000 33088000 29751000 3670900 2981800 689090 0 0 0 54780000 28162000 26619000 0 0 0 4388000 1944900 2443200 0 0 0 + 24902 739;752;787 26191;26192 132261;132262;132263;132264;132265 132924;132925;132926;132927;132928 132926 261 5 MSVEADINGLRR ADDFRTKFETEQALRMSVEADINGLRRVLD ALRMSVEADINGLRRVLDELTLARTDLEMQ R M S R R V 1 2 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 12 1 1359.6929 P02533;CON__P02533;CON__Q6IFX2;CON__P08727;P08727;K7EMS3;C9JM50 CON__P08727 177 188 KRT14;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19 no no 2;3 8.0816E-07 108.7 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 1 5 3 6 5 0.94502 0.90967 39.204 24 Median 0.78878 0.78805 24.907 4 1 Median 1.1832 1.1049 NaN 1 0 Median 0.98505 1.0096 55.131 5 2 Median 1.3794 1.2142 28.203 3 0 Plateau 0.80259 0.85789 32.017 6 0 Median 1.0589 0.93616 49.105 5 0 Median 346550000 176300000 170260000 81016000 43502000 37514000 569880 261090 308800 151900000 74781000 77123000 18815000 8586700 10228000 82520000 44297000 38222000 11730000 4870000 6860300 + 24903 739;752;787 26193;26194 132266;132267;132268;132269;132270;132271;132272;132273;132274;132275;132276;132277;132278;132279;132280;132281;132282;132283;132284;132285;132286;132287;132288;132289 132929;132930;132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944 132935 261 16 MSVFQTQLPTLGVGALKPR ALQAAFKLMSPTGGRMSVFQTQLPTLGVGA QTQLPTLGVGALKPREEPNHRSSAKDIHMT R M S P R E 1 1 0 0 0 2 0 2 0 0 3 1 1 1 2 1 2 0 0 2 0 0 19 1 2042.1347 O95486 O95486 634 652 SEC24A Protein transport protein Sec24A yes yes 3 0.025594 15.09 By MS/MS By matching 2 1 0.8955 0.89496 0.3523 3 Median NaN NaN NaN 0 0 Median 0.91957 0.8972 0.35338 2 0 Median 0.77879 0.89335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4063100 2115400 1947700 0 0 0 3748700 1973100 1775600 314410 142290 172120 0 0 0 0 0 0 0 0 0 24904 1777 26195 132290;132291;132292 132945;132946 132946 2 MSVIWDK NFTLIPEGTNGTEERMSVIWDKAVVTGKMD GTNGTEERMSVIWDKAVVTGKMDENQFVAV R M S D K A 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 7 0 877.43677 Q14195;H0YBT4;Q16555;A0A1C7CYX9 Q16555 362 368 DPYSL3;DPYSL2 Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 2 no no 2 0.024437 55.504 By MS/MS By matching By matching By matching 2 3 1 1 1.0475 1.0283 29.062 7 Median 0.9143 0.88424 21.346 2 0 Median 1.5251 1.3133 41.719 3 0 Median 0.93518 0.99427 NaN 1 0 Median 1.4888 1.2872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15280000 7434300 7846100 8748700 4526800 4221900 3512700 1462800 2049900 2836300 1375900 1460400 182610 68748 113860 0 0 0 0 0 0 24905 328;2864 26196 132293;132294;132295;132296;132297;132298;132299 132947;132948;132949 132949 3 MSVIWER DFTKIPHGVSGVQDRMSVIWERGVVGGKMD GVSGVQDRMSVIWERGVVGGKMDENRFVAV R M S E R G 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 7 0 919.45857 Q9BPU6 Q9BPU6 355 361 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2 0.021608 58.917 By MS/MS 1 0.72337 0.7036 NaN 1 Median 0.72337 0.7036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4987000 2919400 2067600 4987000 2919400 2067600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24906 3776 26197 132300 132950 132950 1 MSVLNMVVR GTPLIAFSLLPHEQKMSVLNMVVRRDPGNT LPHEQKMSVLNMVVRRDPGNTEPVKAKEEL K M S V R R 0 1 1 0 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 3 0 0 9 0 1047.5569 Q2NL82 Q2NL82 591 599 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.039605 33.797 By MS/MS 1 1.2375 1.2113 NaN 1 Median 1.2375 1.2113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2663900 1224000 1440000 2663900 1224000 1440000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24907 3004 26198 132301 132951 132951 1 MSVQPTVSLGGFEITPPVVLR NYEGSPIKVTLATLKMSVQPTVSLGGFEIT VSLGGFEITPPVVLRLKCGSGPVHISGQHL K M S L R L 0 1 0 0 0 1 1 2 0 1 2 0 1 1 3 2 2 0 0 4 0 0 21 0 2226.2082 P06748;E5RI98 P06748 81 101 NPM1 Nucleophosmin yes no 2;3 1.6452E-92 198.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 16 4 9 11 0.71495 0.66357 11.846 48 Median 0.83523 0.795 1.5627 3 0 Plateau 0.81467 0.69104 4.7524 5 1 Median 0.66892 0.65408 4.8874 16 7 Median 0.82801 0.66145 5.1823 4 2 Median 0.68766 0.69917 5.6776 9 0 Median 0.81977 0.64837 20.219 11 0 Median 2272600000 1314700000 957880000 2348700 1283200 1065500 237270000 115540000 121730000 1183700000 706630000 477050000 686210000 402190000 284020000 52716000 30459000 22257000 110380000 58629000 51750000 24908 1877 26199;26200 132302;132303;132304;132305;132306;132307;132308;132309;132310;132311;132312;132313;132314;132315;132316;132317;132318;132319;132320;132321;132322;132323;132324;132325;132326;132327;132328;132329;132330;132331;132332;132333;132334;132335;132336;132337;132338;132339;132340;132341;132342;132343;132344;132345;132346;132347;132348;132349 132952;132953;132954;132955;132956;132957;132958;132959;132960;132961;132962;132963;132964;132965;132966;132967;132968;132969;132970;132971;132972;132973;132974;132975;132976;132977;132978;132979;132980;132981;132982;132983;132984;132985;132986;132987;132988;132989;132990;132991;132992;132993;132994;132995;132996;132997;132998;132999 132963 644 48 MSVTEGGIKYPETTEGGRPK KRVQFGVLSPDELKRMSVTEGGIKYPETTE GGIKYPETTEGGRPKLGGLMDPRQGVIERT R M S P K L 0 1 0 0 0 0 3 4 0 1 0 2 1 0 2 1 3 0 1 1 0 0 20 2 2136.0521 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 34 53 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 4 6.6375E-05 54.103 By MS/MS 1 0.6973 0.92126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6973 0.92126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12384000 7313000 5070900 0 0 0 0 0 0 12384000 7313000 5070900 0 0 0 0 0 0 0 0 0 24909 486 26201 132350 133000 133000 1 MSYEPNKDPYGSMR PGYQPSMNTSDMMGRMSYEPNKDPYGSMRK RMSYEPNKDPYGSMRKAPGSDPFMSSGQGP R M S M R K 0 1 1 1 0 0 1 1 0 0 0 1 2 0 2 2 0 0 2 0 0 0 14 1 1673.7178 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1224 1237 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.00027842 57.414 By MS/MS By MS/MS 2 3 0.96897 0.96598 15.901 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82101 0.95661 19.491 2 0 Median 1.0006 0.96598 17.202 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36271000 19656000 16615000 0 0 0 0 0 0 29979000 16622000 13357000 6292000 3033500 3258400 0 0 0 0 0 0 24910 1480 26202 132351;132352;132353;132354;132355 133001;133002;133003;133004;133005;133006 133001 6 MTAAQPSETTVGNMVR NAGELMELIRREGRRMTAAQPSETTVGNMV TAAQPSETTVGNMVRRVLKIIREEYGRLHG R M T V R R 2 1 1 0 0 1 1 1 0 0 0 0 2 0 1 1 3 0 0 2 0 0 16 0 1691.7971 P49770;H0YJJ8;G3V5E5 P49770 68 83 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 2 1.6609E-09 140.39 By MS/MS By matching By MS/MS 1 3 1 0.96523 0.823 17.607 5 Median 1.0016 1 NaN 1 0 Median 0.88729 0.76547 21.503 3 0 Median NaN NaN NaN 0 0 Median 0.96523 0.823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26869000 13239000 13630000 16513000 7944200 8568300 4850000 2574400 2275600 0 0 0 5506400 2720200 2786200 0 0 0 0 0 0 24911 2398 26203 132356;132357;132358;132359;132360 133007;133008;133009;133010 133007 4 MTAEEMASDELK KNVLCGNIPPDLFARMTAEEMASDELKEMR FARMTAEEMASDELKEMRKNLTKEAIREHQ R M T L K E 2 0 0 1 0 0 3 0 0 0 1 1 2 0 0 1 1 0 0 0 0 0 12 0 1353.5792 A0A1W2PPZ5;P23193;A0A1W2PRL9 A0A1W2PPZ5 223 234 TCEA1 Transcription elongation factor A protein 1 yes no 2 5.4635E-06 112.13 By MS/MS By matching 2 1 0.90048 0.86769 6.4122 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86467 0.82988 6.2994 2 1 Median 1.072 0.8989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27669000 13857000 13811000 0 0 0 0 0 0 26974000 13470000 13505000 694340 387600 306730 0 0 0 0 0 0 24912 341 26204;26205 132361;132362;132363 133011;133012 133012 160 2 MTAEEMASDELKEMR KNVLCGNIPPDLFARMTAEEMASDELKEMR MTAEEMASDELKEMRKNLTKEAIREHQMAK R M T M R K 2 1 0 1 0 0 4 0 0 0 1 1 3 0 0 1 1 0 0 0 0 0 15 1 1769.7634 A0A1W2PPZ5;P23193;A0A1W2PRL9 A0A1W2PPZ5 223 237 TCEA1 Transcription elongation factor A protein 1 yes no 3 0.003858 28.58 By MS/MS By matching 1 1 1.1118 1.09 5.1905 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96467 1.0507 NaN 1 0 Median 1.2814 1.1307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4226000 1898600 2327400 0 0 0 0 0 0 3747300 1695500 2051800 478690 203060 275630 0 0 0 0 0 0 24913 341 26206 132364;132365 133013 133013 1 MTALAQDFAVGLGPR LQSVRPLMKEEDFKRMTALAQDFAVGLGPR MTALAQDFAVGLGPRLQWYLKLKSWWATNY R M T P R L 3 1 0 1 0 1 0 2 0 0 2 0 1 1 1 0 1 0 0 1 0 0 15 0 1545.7973 P50416 P50416 202 216 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes yes 2 1.9024E-07 94.616 By MS/MS 1 0.93262 0.94192 NaN 1 Median 0.93262 0.94192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3303000 1712500 1590500 3303000 1712500 1590500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24914 2413 26207 132366 133014 133014 1 MTAQELANGIPDSGHLYASIR NPCFEEEEHFKVLVKMTAQELANGIPDSGH ANGIPDSGHLYASIRAGRTLTPAGDLQETF K M T I R A 3 1 1 1 0 1 1 2 1 2 2 0 1 0 1 2 1 0 1 0 0 0 21 0 2243.1005 Q5JRX3;A0A0A0MRX9;H0Y7L7 Q5JRX3 705 725 PITRM1 Presequence protease, mitochondrial yes no 3 0.00034108 28.202 By MS/MS By matching By matching 2 1 1 1.0023 0.98279 18.466 4 Median 0.86435 0.84169 6.2072 2 0 Median 1.2437 1.0983 NaN 1 0 Median 1.1087 1.1945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765600 2997300 2768200 4280600 2174900 2105700 508440 283290 225140 976540 539180 437360 0 0 0 0 0 0 0 0 0 24915 3050 26208 132367;132368;132369;132370 133015;133016 133015 2 MTATGSGENSTVAEHLIAQHSAIK ATEEAERIGVDHVARMTATGSGENSTVAEH STVAEHLIAQHSAIKMLHSRVKLILEYVKA R M T I K M 4 0 1 0 0 1 2 2 2 2 1 1 1 0 0 3 3 0 0 1 0 0 24 0 2452.2016 Q7L5N1;E7EM64;H7C3T0 Q7L5N1 206 229 COPS6 COP9 signalosome complex subunit 6 yes no 3;4 1.0046E-16 71.651 By MS/MS By matching By MS/MS 4 1 1 1.1065 1.0333 13.059 6 Median 1.0997 1.0116 3.5403 4 0 Median 1.2803 1.079 NaN 1 0 Median 1.4451 1.3835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108000000 50372000 57630000 101780000 47623000 54156000 1810700 797510 1013200 4412700 1952000 2460700 0 0 0 0 0 0 0 0 0 24916 855 26209 132371;132372;132373;132374;132375;132376 133017;133018;133019;133020;133021;133022 133020 6 MTDAAVSFAK ______________________________ ______________________________ - M T A K D 3 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 1 0 0 10 0 1039.5008 P05141 P05141 1 10 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00035809 94.692 By MS/MS 4 1.2214 1.1854 24.244 4 Median 1.2214 1.1854 24.244 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20138000 7639500 12499000 20138000 7639500 12499000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24917 1861 26210 132377;132378;132379;132380 133023;133024;133025 133024 3 MTDFDRFK TRWAKKIEARERKAKMTDFDRFKVMKAKKM ARERKAKMTDFDRFKVMKAKKMEQNNQE__ K M T F K V 0 1 0 2 0 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0 0 0 8 1 1058.4855 E7EPB3;P50914 E7EPB3 104 111 RPL14 60S ribosomal protein L14 yes no 2 0.0095987 140.98 By MS/MS By matching By matching 2 1 1 1.137 1.2721 12.714 4 Linear 1.137 1.1534 9.5327 2 0 Median 1.2843 1.1909 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0674 0.9288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39911000 18603000 21308000 33413000 15863000 17549000 5985000 2477200 3507800 0 0 0 513330 262760 250580 0 0 0 0 0 0 24918 868 26211 132381;132382;132383;132384 133026;133027 133027 2 MTDGYSGSDLTALAK QGSPLTQKELAQLARMTDGYSGSDLTALAK MTDGYSGSDLTALAKDAALGPIRELKPEQV R M T A K D 2 0 0 2 0 0 0 2 0 0 2 1 1 0 0 2 2 0 1 0 0 0 15 0 1528.7079 A0A2R8Y7K2;A0A2R8Y481;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0 A0A2R8Y7K2 267 281 SPAST Spastin yes no 2 0.044558 34.695 By MS/MS 1 1.1453 1.1466 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1453 1.1466 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5379200 2305700 3073500 0 0 0 0 0 0 5379200 2305700 3073500 0 0 0 0 0 0 0 0 0 24919 361 26212 132385 133028 133028 1 MTDQEAIQDLWQWR KVEAKFINYVKNCFRMTDQEAIQDLWQWRK RMTDQEAIQDLWQWRKSL____________ R M T W R K 1 1 0 2 0 3 1 0 0 1 1 0 1 0 0 0 1 2 0 0 0 0 14 0 1818.8359 P06748 P06748 278 291 NPM1 Nucleophosmin yes yes 2 1.2243E-115 282.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 2 4 1.1562 1.0883 12.146 16 Median 1.2762 1.2256 3.789 3 0 Median 1.1689 0.99927 9.716 2 0 Median 1.0795 1.0392 10.257 5 0 Median 1.3035 1.094 0.44657 2 0 Median 1.0373 1.0605 17.343 4 0 Median NaN NaN NaN 0 0 Median 109970000 51598000 58371000 3141500 1400300 1741200 2681700 1168200 1513500 94127000 44364000 49763000 1415900 583340 832510 8602900 4082100 4520900 0 0 0 24920 1877 26213;26214 132386;132387;132388;132389;132390;132391;132392;132393;132394;132395;132396;132397;132398;132399;132400;132401 133029;133030;133031;133032;133033;133034;133035;133036;133037;133038;133039 133037 645 10 MTDSFTEQADQVTAEVGK DVVENEEASASIIVKMTDSFTEQADQVTAE SFTEQADQVTAEVGKLLGEEKVDAILCVAG K M T G K L 2 0 0 2 0 2 2 1 0 0 0 1 1 1 0 1 3 0 0 2 0 0 18 0 1955.8782 P09417;B7Z415;D6RGG7;H0Y8F7 P09417 56 73 QDPR Dihydropteridine reductase yes no 2 8.0792E-06 57.802 By MS/MS 1 1.1082 1.0299 NaN 1 Median 1.1082 1.0299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5922600 2629500 3293200 5922600 2629500 3293200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24921 1914 26215 132402 133040;133041 133041 2 MTDVFEGSIIR VYTWATGATFAHICKMTDVFEGSIIRCMRR HICKMTDVFEGSIIRCMRRLEELLRQMCQA K M T I R C 0 1 0 1 0 0 1 1 0 2 0 0 1 1 0 1 1 0 0 1 0 0 11 0 1266.6278 P42285;H0YAC4 P42285 985 995 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.017604 45.997 By MS/MS By MS/MS 2 1 1.2978 1.2634 6.8034 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2051 1.3256 NaN 1 0 Median 1.3975 1.204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5873300 2313100 3560200 0 0 0 0 0 0 5372000 2053900 3318100 501340 259160 242180 0 0 0 0 0 0 24922 2309 26216 132403;132404;132405 133042;133043 133043 2 MTEADVNPK ______________________________ ______________________________ - M T P K A 1 0 1 1 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 9 0 1003.4644 P55769 P55769 1 9 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2 0.0093719 49.418 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 0.94965 0.93812 70.094 5 Median 0.80176 0.75352 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94965 0.91153 NaN 1 0 Median 1.7728 1.4557 NaN 1 0 Median 0.87041 0.93812 NaN 1 0 Median 4.9969 4.2872 NaN 1 0 Median 16593000 7830200 8763100 979740 581020 398710 0 0 0 8157000 3969700 4187300 608600 223640 384960 5818600 2919500 2899100 1029400 136350 893010 24923 2501 26217 132406;132407;132408;132409;132410 133044;133045 133044 2 MTEDALR ______________________________ ______________________________ R M T L R L 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 7 0 834.39055 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3;A0A1B0GVS4 A0A0U1RRM1 4 10 GATAD2B Transcriptional repressor p66-beta yes no 2 0.031276 49.358 By MS/MS 1 1.1283 1.1894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1283 1.1894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1502900 674120 828790 0 0 0 0 0 0 1502900 674120 828790 0 0 0 0 0 0 0 0 0 24924 311 26218 132411 133046 133046 1 MTEEKLAEAER YREYHTDTTVKFVVKMTEEKLAEAERVGLH FVVKMTEEKLAEAERVGLHKVFKLQTSLTC K M T E R V 2 1 0 0 0 0 4 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 11 1 1305.6235 P11388 P11388 972 982 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0033223 64.297 By MS/MS 1 1.4965 1.6943 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4965 1.6943 NaN 1 0 Median NaN NaN NaN 0 0 Median 3077600 1115900 1961700 0 0 0 0 0 0 0 0 0 0 0 0 3077600 1115900 1961700 0 0 0 24925 1963 26219 132412 133047 133047 1 MTEIQTPENTPR ATFIGLDKMAVWAKKMTEIQTPENTPRLFD AKKMTEIQTPENTPRLFDLVKVKDEKIRQA K M T P R L 0 1 1 0 0 1 2 0 0 1 0 0 1 0 2 0 3 0 0 0 0 0 12 0 1415.6715 Q9NTJ3;E9PD53 Q9NTJ3 681 692 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 3.6214E-05 105.98 By MS/MS 1 0.73517 0.64567 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73517 0.64567 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2371700 1053900 1317800 0 0 0 0 0 0 0 0 0 2371700 1053900 1317800 0 0 0 0 0 0 24926 4108 26220 132413 133048 133048 1 MTENSTSAPAAKPK ______________________________ ______________________________ - M T P K R 3 0 1 0 0 0 1 0 0 0 0 2 1 0 2 2 2 0 0 0 0 0 14 1 1431.7028 P07305 P07305 1 14 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.00042012 56.359 By MS/MS By MS/MS 2 1 0.52773 0.55561 57.629 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48237 0.51133 11.745 2 0 Median 1.6077 1.373 NaN 1 0 Median 10124000 6479500 3644600 0 0 0 0 0 0 0 0 0 0 0 0 9499900 6282400 3217500 624230 197130 427110 24927 1884 26221 132414;132415;132416 133049;133050;133051 133051 3 MTEQAISFAK ______________________________ ______________________________ - M T A K D 2 0 0 0 0 1 1 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 10 0 1124.5536 P12236 P12236 1 10 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 2 0.0013379 66.692 By MS/MS 1 1.2478 1.2504 NaN 1 Median 1.2478 1.2504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12274000 4984500 7289600 12274000 4984500 7289600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24928 1977 26222 132417 133052;133053 133052 2 MTEQMTLR ______________________________ ______________________________ - M T L R G 0 1 0 0 0 1 1 0 0 0 1 0 2 0 0 0 2 0 0 0 0 0 8 0 1008.4732 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;D6RFZ9;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909;D6RHJ5;D6RDI0 P63244 1 8 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.0039003 85.212 By MS/MS By matching 1 1 1.2403 1.1062 14.255 2 Median 1.2929 1.2235 NaN 1 0 Median 1.1898 1.0001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7250100 3115500 4134600 5005600 2215800 2789700 2244500 899680 1344900 0 0 0 0 0 0 0 0 0 0 0 0 24929 2624 26223 132418;132419 133054 133054 1 MTEVVLKAPDSSPESR ALLSKMRAIDLQIKKMTEVVLKAPDSSPES TEVVLKAPDSSPESRRLNAQILSQRIEKAK K M T S R R 1 1 0 1 0 0 2 0 0 0 1 1 1 0 2 3 1 0 0 2 0 0 16 1 1744.8665 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3065 3080 SYNE2 Nesprin-2 yes no 3 0.029384 32.091 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24930 3521 26224 132420 133055 133055 1 MTEWETAAPAVAETPDIK ______________________________ WETAAPAVAETPDIKLFGKWSTDDVQINDI - M T I K L 4 0 0 1 0 0 3 0 0 1 0 1 1 0 2 0 3 1 0 1 0 0 18 0 1958.9295 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 1 18 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 6.8389E-06 51.841 By MS/MS By matching By MS/MS By matching 2 1 2 2 0.79272 0.79631 11.77 7 Median 0.84312 0.79556 10.577 2 0 Median 1.1511 1.0002 NaN 1 0 Median 0.82409 0.78388 7.0376 2 0 Median NaN NaN NaN 0 0 Median 0.72464 0.74866 8.7269 2 0 Median NaN NaN NaN 0 0 Median 15090000 8159000 6931500 9890600 5277900 4612700 116670 42053 74615 3901100 2175500 1725600 0 0 0 1182100 663480 518620 0 0 0 24931 1425 26225;26226 132421;132422;132423;132424;132425;132426;132427 133056;133057;133058 133058 457 3 MTFTSNK HDKIRKGCVITISGRMTFTSNKSMEIEVLV CVITISGRMTFTSNKSMEIEVLVDADPVVD R M T N K S 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 1 2 0 0 0 0 0 7 0 827.38474 O00154;K7EKP8;Q6ZUV0 O00154 296 302 ACOT7;ACOT7L Cytosolic acyl coenzyme A thioester hydrolase;Putative cytosolic acyl coenzyme A thioester hydrolase-like yes no 2 0.034356 47.849 By MS/MS 1 1.2619 1.0818 NaN 1 Median NaN NaN NaN 0 0 Median 1.2619 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1506300 628600 877690 0 0 0 1506300 628600 877690 0 0 0 0 0 0 0 0 0 0 0 0 24932 1443 26227 132428 133059 133059 1 MTGEEKEFETIERDER AVATSTNTPCARIPRMTGEEKEFETIERDE TGEEKEFETIERDERYIHPQQEAFSIQLIS R M T E R Y 0 2 0 1 0 0 6 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 16 2 1997.9 Q10570 Q10570 1050 1065 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 3 0.00029092 40.941 By MS/MS 1 1.0116 1.1509 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0116 1.1509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7599500 3062500 4537000 0 0 0 0 0 0 7599500 3062500 4537000 0 0 0 0 0 0 0 0 0 24933 2753 26228 132429 133060 133060 1 MTGHQALINQVLFSPDSR LFLWSPAEDKKPLTRMTGHQALINQVLFSP HQALINQVLFSPDSRIVASASFDKSIKLWD R M T S R I 1 1 1 1 0 2 0 1 1 1 2 0 1 1 1 2 1 0 0 1 0 0 18 0 2013.0102 Q9NVX2;A0A0A0MRH0;K7EN33 Q9NVX2 368 385 NLE1 Notchless protein homolog 1 yes no 3 7.1093E-09 74.519 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.0018 0.96247 33.452 7 Median 1.0018 0.99961 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0415 1.026 NaN 1 0 Median 1.1433 0.99396 4.5528 2 0 Median 0.80741 0.81079 45.112 3 1 Median NaN NaN NaN 0 0 Median 31316000 16526000 14790000 2459600 1184100 1275500 0 0 0 12825000 6081800 6742900 1442600 692260 750370 14589000 8568300 6021100 0 0 0 24934 4142 26229 132430;132431;132432;132433;132434;132435;132436 133061;133062;133063;133064 133063 4 MTGLVDEAIDTK HFETMKNQWIDNVEKMTGLVDEAIDTKSLL VEKMTGLVDEAIDTKSLLDASEEAIKKDLD K M T T K S 1 0 0 2 0 0 1 1 0 1 1 1 1 0 0 0 2 0 0 1 0 0 12 0 1291.633 P18206 P18206 709 720 VCL Vinculin yes yes 2 0.00082411 72.848 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 2 1 0.93352 0.83982 38.83 7 Median 1.0091 0.95411 7.4282 2 1 Median 0.93352 0.78573 NaN 1 0 Median 0.78542 0.83982 NaN 1 0 Median 0.78876 0.68416 2.9978 2 0 Median 1.9487 2.108 NaN 1 0 Median NaN NaN NaN 0 0 Median 102790000 48184000 54605000 49090000 24290000 24800000 27708000 14194000 13514000 8854300 4767800 4086500 2317800 1167100 1150800 14819000 3765800 11053000 0 0 0 24935 2057 26230 132437;132438;132439;132440;132441;132442;132443;132444 133065;133066;133067;133068;133069;133070 133068 6 MTGSEFDFEEMKR HFETTCDDIKNIYKRMTGSEFDFEEMKRKK KRMTGSEFDFEEMKRKKNDIYGED______ R M T K R K 0 1 0 1 0 0 3 1 0 0 0 1 2 2 0 1 1 0 0 0 0 0 13 1 1605.6803 P50395 P50395 424 436 GDI2 Rab GDP dissociation inhibitor beta yes yes 3 1.2558E-07 107.09 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.0861 1.0473 21.896 5 Median 0.83095 0.83836 37.273 2 0 Median 1.0861 0.99202 NaN 1 0 Median 1.0351 1.051 NaN 1 0 Median 1.0938 1.0473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39045000 18266000 20780000 9839100 4504500 5334600 3289500 1565600 1723900 18447000 8649700 9797300 7469800 3545900 3923900 0 0 0 0 0 0 24936 2411 26231 132445;132446;132447;132448;132449 133071;133072;133073;133074;133075 133073 5 MTHNLLLNYGLYR YYYGQGHPMKPHRIRMTHNLLLNYGLYRKM IRMTHNLLLNYGLYRKMEIYRPHKANAEEM R M T Y R K 0 1 2 0 0 0 0 1 1 0 4 0 1 0 0 0 1 0 2 0 0 0 13 0 1606.829 Q13547;Q5TEE2;Q92769;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 Q13547 37 49 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2;3 7.1363E-10 136.63 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 2 11 5 8 5 1.171 1.0715 18.466 34 Median 1.1633 1.15 36.904 5 0 Median 1.1903 1.0418 0.1338 2 0 Median 1.0253 1.0161 12.823 10 2 Median 1.3069 1.0992 8.4183 5 0 Median 1.064 1.0928 16.468 8 1 Median 1.3422 1.1355 24.456 4 0 Median 322340000 156910000 165420000 18666000 9761700 8904000 4290100 1901900 2388200 238430000 116700000 121730000 4246600 1849000 2397600 54139000 25536000 28603000 2564000 1168700 1395400 24937 2823;3555 26232;26233 132450;132451;132452;132453;132454;132455;132456;132457;132458;132459;132460;132461;132462;132463;132464;132465;132466;132467;132468;132469;132470;132471;132472;132473;132474;132475;132476;132477;132478;132479;132480;132481;132482;132483;132484;132485 133076;133077;133078;133079;133080;133081;133082;133083;133084;133085;133086;133087;133088;133089;133090;133091;133092;133093;133094;133095;133096;133097;133098;133099;133100;133101;133102;133103;133104;133105 133105 1518 30 MTILQTYFR RGSCSTEVEKETQEKMTILQTYFRQNRDEV KETQEKMTILQTYFRQNRDEVLDNLLAFVC K M T F R Q 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 2 0 1 0 0 0 9 0 1171.606 O75348 O75348 81 89 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 2 5.2637E-16 186.13 By MS/MS By matching By MS/MS By matching By matching 6 2 3 2 1 1.1981 1.1655 16.725 14 Median 1.1578 1.1387 7.8378 6 1 Median 1.451 1.2257 1.4329 2 0 Median 1.4442 1.4622 6.4459 3 0 Median NaN NaN NaN 0 0 Median 1.1209 1.1934 17.466 2 0 Median 1.0875 0.82646 NaN 1 0 Median 93375000 40449000 52925000 69586000 30756000 38830000 2389500 941420 1448100 17716000 6974000 10742000 0 0 0 3083700 1516800 1566900 599210 261360 337850 24938 1660 26234;26235 132486;132487;132488;132489;132490;132491;132492;132493;132494;132495;132496;132497;132498;132499 133106;133107;133108;133109;133110;133111;133112;133113;133114;133115 133113 526 10 MTISQQEFGR IATTGTEDSDDALLKMTISQQEFGRTGLPD DALLKMTISQQEFGRTGLPDLSSMTEEEQI K M T G R T 0 1 0 0 0 2 1 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1195.5656 P55036;Q5VWC4;H0Y3Y9 P55036 263 272 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2 6.2523E-07 157.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1703 1.0429 7.6528 4 Median 1.1548 1.0844 NaN 1 0 Median 1.1923 1.003 NaN 1 0 Median 1.186 1.1696 NaN 1 0 Median 1.1528 0.99265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70760000 31527000 39232000 32994000 14994000 18000000 12061000 5486900 6573600 11759000 5116100 6642700 13946000 5930100 8015700 0 0 0 0 0 0 24939 2491 26236 132500;132501;132502;132503;132504 133116;133117;133118;133119;133120;133121;133122;133123;133124;133125 133125 10 MTITEQKYEGEYR VSGLFLTRLRRPIGKMTITEQKYEGEYRYV GKMTITEQKYEGEYRYVNSRLITNSEEIAF K M T Y R Y 0 1 0 0 0 1 3 1 0 1 0 1 1 0 0 0 2 0 2 0 0 0 13 1 1646.761 P28288 P28288 254 266 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2;3 0.00088727 81.865 By MS/MS By matching By MS/MS 3 1 1 1.0539 1.1747 20.264 5 Median 0.93245 0.93629 19.436 3 0 Median 1.5049 1.382 NaN 1 0 Median 1.0539 1.1747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18000000 9104000 8896000 13401000 6870200 6531300 2060600 973860 1086700 2537900 1260000 1278000 0 0 0 0 0 0 0 0 0 24940 2163 26237 132505;132506;132507;132508;132509 133126;133127 133126 2 MTLADDVTLDDLIMAK DEKTKKRIFQIHTSRMTLADDVTLDDLIMA TLADDVTLDDLIMAKDDLSGADIKAICTEA R M T A K D 2 0 0 4 0 0 0 0 0 1 3 1 2 0 0 0 2 0 0 1 0 0 16 0 1763.8685 P62191 P62191 372 387 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.00013929 61.353 By MS/MS 1 1.1721 0.99528 NaN 1 Median NaN NaN NaN 0 0 Median 1.1721 0.99528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7402200 3398800 4003400 0 0 0 7402200 3398800 4003400 0 0 0 0 0 0 0 0 0 0 0 0 24941 2571 26238 132510 133128;133129 133128 2 MTLADIER DILFQLADLYEPRGRMTLADIERIAPLEEG LYEPRGRMTLADIERIAPLEEGTLPFNLAE R M T E R I 1 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 8 0 947.47462 Q9UJS0 Q9UJS0 285 292 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 0.0039199 84.568 By MS/MS By MS/MS 1 1 1.031 0.93402 9.3021 2 Median 0.9212 0.87456 NaN 1 0 Median 1.1538 0.99752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27987000 13408000 14579000 12297000 6172500 6124500 15690000 7235400 8454500 0 0 0 0 0 0 0 0 0 0 0 0 24942 4297 26239 132511;132512 133130;133131;133132;133133 133131 4 MTLDDFR TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA R M T F R I 0 1 0 2 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 896.4062 P35527;CON__P35527;K7EQQ3 P35527 234 240 KRT9 Keratin, type I cytoskeletal 9 yes no 2 5.1729E-05 124.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 7 15 14 12 0.019902 0.019639 166.26 20 Median 0.021208 0.020397 86.707 3 3 Median 0.3403 0.2841 126.35 2 2 Median 0.018677 0.018908 188.32 5 5 Median 0.032779 0.028122 153.58 4 4 Median 0.010118 0.010126 137.76 6 6 Median NaN NaN NaN 0 0 Median 724100000 717500000 6608400 184280000 182930000 1346000 79041000 77231000 1810200 140220000 138840000 1387600 89684000 89396000 288350 230880000 229100000 1776300 0 0 0 + 24943 2242 26240;26241 132513;132514;132515;132516;132517;132518;132519;132520;132521;132522;132523;132524;132525;132526;132527;132528;132529;132530;132531;132532;132533;132534;132535;132536;132537;132538;132539;132540;132541;132542;132543;132544;132545;132546;132547;132548;132549;132550;132551;132552;132553;132554;132555;132556;132557;132558;132559;132560;132561;132562;132563;132564;132565;132566;132567;132568;132569;132570;132571;132572 133134;133135;133136;133137;133138;133139;133140;133141;133142;133143;133144;133145;133146;133147;133148;133149;133150;133151;133152;133153;133154;133155;133156;133157;133158;133159;133160;133161;133162;133163;133164;133165;133166;133167;133168;133169;133170;133171;133172;133173;133174;133175;133176;133177;133178;133179;133180;133181;133182;133183;133184;133185;133186;133187;133188;133189;133190;133191;133192;133193;133194;133195;133196;133197 133158 976 64 MTLDQQHIETPGQNIPTK QVTVNLSPVPALQSKMTLDQQHIETPGQNI DQQHIETPGQNIPTKVTSAVVGPSHEVQEQ K M T T K V 0 0 1 1 0 3 1 1 1 2 1 1 1 0 2 0 3 0 0 0 0 0 18 0 2050.0153 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 1069 1086 QSER1 Glutamine and serine-rich protein 1 yes no 3 0.0035471 37.687 By MS/MS 1 0.40934 0.45109 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40934 0.45109 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17841000 12148000 5693300 0 0 0 0 0 0 17841000 12148000 5693300 0 0 0 0 0 0 0 0 0 24944 418 26242 132573 133198 133198 1 MTLDTLSIYETPSMGLLDKK WPIFKWSHDGKFFARMTLDTLSIYETPSMG LSIYETPSMGLLDKKSLKISGIKDFSWSPG R M T K K S 0 0 0 2 0 0 1 1 0 1 4 2 2 0 1 2 3 0 1 0 0 0 20 1 2255.1429 P55884 P55884 441 460 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 3 0.00039841 29.636 By MS/MS By MS/MS By matching 2 2 1 1.0196 0.986 23.441 5 Median 0.7296 0.76068 9.3775 2 0 Median 1.0728 1.0178 4.4963 2 0 Median 1.1416 1.3048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18215000 8994300 9220800 10233000 5120300 5112600 6903900 3382000 3521800 1078300 491930 586380 0 0 0 0 0 0 0 0 0 24945 2504 26243 132574;132575;132576;132577;132578 133199;133200;133201;133202 133201 4 MTLQLIK RAQQSAVRLTEIGPRMTLQLIKVQEGVGEG RLTEIGPRMTLQLIKVQEGVGEGKVMFHSF R M T I K V 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 7 0 845.50446 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 279 285 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.032882 62.714 By MS/MS 1 0.80756 0.76898 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80756 0.76898 NaN 1 1 Median NaN NaN NaN 0 0 Median 5980300 3330700 2649600 0 0 0 0 0 0 0 0 0 0 0 0 5980300 3330700 2649600 0 0 0 24946 205 26244 132579 133203 133203 1 MTMDKSELVQK ______________________________ ______________________________ - M T Q K A 0 0 0 1 0 1 1 0 0 0 1 2 2 0 0 1 1 0 0 1 0 0 11 1 1308.6418 P31946;Q4VY20;Q4VY19;A0A0J9YWE8 P31946 1 11 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2 5.9428E-07 164.97 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.1905 1.2065 10.722 7 Median 1.0964 1.1135 11.352 2 0 Median 1.4166 1.2954 5.8601 2 1 Median 1.0761 1.0762 5.4366 2 0 Median NaN NaN NaN 0 0 Median 1.217 1.295 NaN 1 0 Median NaN NaN NaN 0 0 Median 111010000 48368000 62642000 82518000 35505000 47014000 10690000 4772300 5917800 13605000 6615500 6989300 0 0 0 4197000 1476000 2721000 0 0 0 24947 2210 26245;26246 132580;132581;132582;132583;132584;132585;132586 133204;133205;133206;133207;133208;133209;133210;133211 133207 953 8 MTMLLLYHSTMSSK SAQKVLEGSELELAKMTMLLLYHSTMSSKS KMTMLLLYHSTMSSKSPRDWEQFEYKIQAE K M T S K S 0 0 0 0 0 0 0 0 1 0 3 1 3 0 0 3 2 0 1 0 0 0 14 0 1641.7929 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;Q14980 Q14980 98 111 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.0008456 41.967 By matching By MS/MS By matching 1 2 1 1.084 1.0976 8.118 4 Median NaN NaN NaN 0 0 Median 1.3723 1.1914 NaN 1 0 Median 0.99025 1.0976 8.5267 2 0 Median 1.1229 1.0172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20027000 10418000 9608900 0 0 0 791160 273080 518080 19149000 10108000 9041200 86782 37080 49702 0 0 0 0 0 0 24948 2905;77 26247;26248 132587;132588;132589;132590 133212;133213;133214 133212 34;35 3 MTMYADEVESQLK ELKMISTPSPKKSMKMTMYADEVESQLKNI MKMTMYADEVESQLKNIRNSMRADSVSSSN K M T L K N 1 0 0 1 0 1 2 0 0 0 1 1 2 0 0 1 1 0 1 1 0 0 13 0 1543.6898 Q53F19 Q53F19 422 434 C17orf85 Uncharacterized protein C17orf85 yes yes 2 0.00073014 66.595 By matching By MS/MS 1 1 1.1263 1.0787 6.2349 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2711 1.1273 NaN 1 0 Median 0.9981 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median 4460800 2218000 2242800 0 0 0 0 0 0 0 0 0 248490 97256 151230 4212300 2120700 2091600 0 0 0 24949 3027 26249 132591;132592 133215;133216 133216 2 MTNPAIQNDFSYYR FAEILHFTLRFDELKMTNPAIQNDFSYYRR KMTNPAIQNDFSYYRRTLSRMRINNVPAEG K M T Y R R 1 1 2 1 0 1 0 0 0 1 0 0 1 1 1 1 1 0 2 0 0 0 14 0 1718.7723 Q9NUQ9;A0A1W2PRQ0;A0A087X178 Q9NUQ9 147 160 FAM49B Protein FAM49B yes no 2 7.3287E-24 202.16 By MS/MS By matching By matching 2 2 1 0.86585 0.80895 77.958 5 Median 0.86491 0.80769 0.21923 2 0 Median 0.93286 0.79042 33.822 2 0 Median 4.1847 4.3804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60404000 28915000 31489000 51765000 26573000 25191000 3341400 1512000 1829400 5298000 829810 4468200 0 0 0 0 0 0 0 0 0 24950 4120 26250;26251 132593;132594;132595;132596;132597 133217;133218;133219;133220 133219 1884 4 MTNYDVEHTIK RSYPHLRRVFQEFIKMTNYDVEHTIKKEMS EFIKMTNYDVEHTIKKEMSGDVRDAFVAIV K M T I K K 0 0 1 1 0 0 1 0 1 1 0 1 1 0 0 0 2 0 1 1 0 0 11 0 1349.6286 E5RK69;P08133;E7EMC6 P08133 569 579 ANXA6 Annexin;Annexin A6 no no 2;3 0.00043401 58.132 By matching By MS/MS By matching 1 2 1 1.3939 1.2315 33.691 4 Median 1.2734 1.2297 NaN 1 0 Median 1.3939 1.1706 7.361 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1542 2.3182 NaN 1 0 Median NaN NaN NaN 0 0 Median 24167000 9727600 14439000 2119000 1020200 1098800 16675000 7066100 9609000 0 0 0 0 0 0 5372500 1641300 3731200 0 0 0 24951 1898;854 26252 132598;132599;132600;132601 133221;133222 133221 2 MTNYDVEHTIKK RSYPHLRRVFQEFIKMTNYDVEHTIKKEMS FIKMTNYDVEHTIKKEMSGDVRDAFVAIVQ K M T K K E 0 0 1 1 0 0 1 0 1 1 0 2 1 0 0 0 2 0 1 1 0 0 12 1 1477.7235 E5RK69;P08133;E7EMC6 P08133 569 580 ANXA6 Annexin;Annexin A6 no no 3 0.00012565 76.165 By MS/MS By MS/MS By matching 2 1 1 0.9355 0.91911 19.641 4 Median 0.9355 0.91911 3.5177 2 0 Median 1.2795 1.1942 NaN 1 0 Median 0.64984 0.74085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34884000 16559000 18325000 20951000 10213000 10738000 11891000 5183700 6707200 2042400 1162600 879780 0 0 0 0 0 0 0 0 0 24952 1898;854 26253 132602;132603;132604;132605 133223;133224;133225 133224 3 MTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR PFHPKPKIRTRKSSRMTPFPATSAAPEPHP TAQPVTPKPTSQATRSRTNRSSVKTPEPVV R M T T R S 5 1 0 0 0 2 1 0 1 0 0 1 1 1 8 4 7 0 0 1 0 0 33 1 3388.6722 Q14676;H0Y6Z8 Q14676 1115 1147 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 4 7.4415E-09 54.326 By MS/MS 3 0.27767 0.33176 1.3951 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27767 0.33176 1.3951 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132840000 114590000 18250000 0 0 0 0 0 0 132840000 114590000 18250000 0 0 0 0 0 0 0 0 0 24953 2887 26254;26255 132606;132607;132608 133226;133227;133228;133229 133228 1575 4 MTPPIKDLLPR LGALKAIVNVIGMHKMTPPIKDLLPRLTPI GMHKMTPPIKDLLPRLTPILKNRHEKVQEN K M T P R L 0 1 0 1 0 0 0 0 0 1 2 1 1 0 3 0 1 0 0 0 0 0 11 1 1279.7322 O75533;H7C341 O75533 1009 1019 SF3B1 Splicing factor 3B subunit 1 yes no 3 0.00015074 69.01 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.63349 0.7189 9.8266 6 Median 0.79398 0.82148 NaN 1 0 Median 0.82271 0.79577 NaN 1 0 Median 0.62364 0.70792 9.7869 2 0 Median NaN NaN NaN 0 0 Median 0.5991 0.66948 2.4646 2 0 Median NaN NaN NaN 0 0 Median 17836000 10455000 7381100 1395200 648750 746460 317870 172700 145160 6616800 3834100 2782700 0 0 0 9506500 5799700 3706800 0 0 0 24954 1683 26256;26257 132609;132610;132611;132612;132613;132614 133230;133231;133232;133233;133234;133235 133234 544 6 MTPSYEIR GDVKNFLYAWCGKRKMTPSYEIRAVGNKNR AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ K M T I R A 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 8 0 995.47462 Q08211 Q08211 17 24 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 1.1069 1.0959 10.993 9 Median NaN NaN NaN 0 0 Median 1.3073 1.0851 NaN 1 0 Median 0.99215 1.0872 5.4377 2 0 Median 1.2878 1.0959 NaN 1 1 Median 1.1069 1.1103 13.687 3 0 Median 1.1654 0.97455 18.824 2 0 Median 61196000 26481000 34715000 0 0 0 22578000 9439300 13138000 11749000 4011400 7737700 2595000 1169000 1426000 17387000 8550200 8837200 6886700 3311200 3575500 24955 2736 26258;26259 132615;132616;132617;132618;132619;132620;132621;132622;132623 133236;133237;133238;133239;133240;133241;133242;133243;133244;133245;133246 133237 1424 11 MTQLVLPGMVER VIKKMININILSVCKMTQLVLPGMVERSKG VCKMTQLVLPGMVERSKGAILNISSGSGML K M T E R S 0 1 0 0 0 1 1 1 0 0 2 0 2 0 1 0 1 0 0 2 0 0 12 0 1372.7207 Q53GQ0;A0A1B0GV93;A0A1B0GVY6;E9PI21 Q53GQ0 168 179 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 3.3934E-06 108.67 By MS/MS By matching 3 2 0.9808 0.91025 16.565 5 Median 0.94237 0.87989 19.526 3 0 Median 1.122 0.94329 5.0423 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93230000 48943000 44288000 84101000 44475000 39626000 9129800 4467600 4662200 0 0 0 0 0 0 0 0 0 0 0 0 24956 3030 26260;26261 132624;132625;132626;132627;132628 133247;133248;133249;133250 133249 1657 4 MTQNPNYYNLQGISHR QDAVDYLTWTFLYRRMTQNPNYYNLQGISH TQNPNYYNLQGISHRHLSDHLSELVEQTLS R M T H R H 0 1 3 0 0 2 0 1 1 1 1 0 1 0 1 1 1 0 2 0 0 0 16 0 1934.9057 O75643 O75643 1764 1779 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.2013E-10 152.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 6 6 3 2 0.87815 0.87329 15.312 24 Median 0.94974 0.90734 24.167 4 0 Median 1.0914 0.92819 9.7051 3 0 Plateau 0.79074 0.85143 9.1369 6 0 Median 0.91668 0.79501 19.65 6 0 Median 0.85523 0.89388 5.8873 3 1 Median 0.91679 0.76717 24.204 2 0 Median 316470000 163250000 153220000 64574000 32372000 32202000 26199000 12034000 14165000 160220000 85825000 74394000 28748000 13637000 15111000 34540000 18309000 16231000 2193500 1077500 1116000 24957 1688 26262;26263 132629;132630;132631;132632;132633;132634;132635;132636;132637;132638;132639;132640;132641;132642;132643;132644;132645;132646;132647;132648;132649;132650;132651;132652 133251;133252;133253;133254;133255;133256;133257;133258;133259;133260;133261;133262;133263;133264;133265;133266;133267;133268;133269;133270;133271;133272;133273;133274;133275;133276;133277;133278;133279 133252 555 29 MTSALTQGLER ______________________________ ______________________________ - M T E R I 1 1 0 0 0 1 1 1 0 0 2 0 1 0 0 1 2 0 0 0 0 0 11 0 1205.6074 A0A087WV46;C9JXA7;Q0VGL1 A0A087WV46 1 11 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes no 2 0.0071141 43.282 By MS/MS 1 0.45745 0.44642 NaN 1 Median 0.45745 0.44642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3057200 1511100 1546100 3057200 1511100 1546100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24958 39 26264 132653 133280 133280 1 MTSGVTGDWK AAILAAVSSIAQKIRMTSGVTGDWKVMNIL AQKIRMTSGVTGDWKVMNILHRIASQVAAL R M T W K V 0 0 0 1 0 0 0 2 0 0 0 1 1 0 0 1 2 1 0 1 0 0 10 0 1080.491 P28331;B4DJ81 P28331 502 511 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.0084719 46.462 By MS/MS By MS/MS 2 2 1.3975 1.3019 16.651 4 Median 1.1657 1.146 20.295 2 0 Median 1.5567 1.3725 9.7191 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7063900 3110200 3953700 4725300 2239200 2486200 2338600 871050 1467500 0 0 0 0 0 0 0 0 0 0 0 0 24959 2165 26265 132654;132655;132656;132657 133281;133282 133281 2 MTSMTQSLR ______________________________ ______________________________ - M T L R E 0 1 0 0 0 1 0 0 0 0 1 0 2 0 0 2 2 0 0 0 0 0 9 0 1053.4947 Q9NPJ3 Q9NPJ3 1 9 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes yes 2 0.00096475 89.355 By MS/MS By matching By MS/MS 1 1 1 1.0779 1.0653 28.541 3 Median 1.0779 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0203 1.0324 NaN 1 0 Median 2.1711 1.7181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8592600 3807800 4784800 5274200 2364900 2909200 0 0 0 2709000 1251200 1457700 609470 191690 417780 0 0 0 0 0 0 24960 4055 26266 132658;132659;132660 133283;133284 133283 2 MTSSDKDFR ______________________________ SNLLEKMTSSDKDFRFMATNDLMTELQKDS K M T F R F 0 1 0 2 0 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 0 9 1 1085.4812 Q86VP6 Q86VP6 15 23 CAND1 Cullin-associated NEDD8-dissociated protein 1 no no 2 0.026831 56.916 By matching By MS/MS By matching By matching 1 1 1 1 1.2477 1.2927 10.138 4 Median 1.1143 1.1525 NaN 1 0 Median 1.2782 1.1985 NaN 1 0 Median 1.2178 1.3943 NaN 1 0 Median 1.4581 1.4012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7094000 3052200 4041900 1140700 554650 586050 5041600 2104900 2936800 688680 308110 380580 223020 84538 138490 0 0 0 0 0 0 24961 3288 26267 132661;132662;132663;132664 133285;133286;133287 133286 3 MTTSPPKDSDQLDVIQENR LACVEPVRLQAWLTRMTTSPPKDSDQLDVI PPKDSDQLDVIQENRQLLQLLTTYIVRENS R M T N R Q 0 1 1 3 0 2 1 0 0 1 1 1 1 0 2 2 2 0 0 1 0 0 19 1 2173.0321 Q5T4S7;A0A0A0MSW0 Q5T4S7 1471 1489 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 4.1636E-19 122.44 By MS/MS By MS/MS 1 1 0.74666 0.73237 4.7127 2 Median 0.72904 0.75718 NaN 1 0 Median 0.7647 0.70836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22655000 12145000 10510000 11255000 5510100 5745100 11400000 6634500 4765100 0 0 0 0 0 0 0 0 0 0 0 0 24962 3089 26268 132665;132666 133288;133289 133288 2 MTVAHMWFDNQIHEADTTENQSGVSFDK STICSDKTGTLTQNRMTVAHMWFDNQIHEA EADTTENQSGVSFDKTSATWLALSRIAGLC R M T D K T 2 0 2 3 0 2 2 1 2 1 0 1 2 2 0 2 3 1 0 2 0 0 28 0 3237.4132 P05023 P05023 386 413 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 3;4 0.0002186 26.9 By MS/MS By MS/MS 6 1 1.0067 0.961 13.619 7 Median 1.0219 0.99258 13.31 6 0 Median 1.0067 0.88213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26135000 11745000 14389000 24312000 10875000 13437000 1822400 870190 952220 0 0 0 0 0 0 0 0 0 0 0 0 24963 1857 26269 132667;132668;132669;132670;132671;132672;132673 133290;133291;133292;133293 133291 4 MTVCLETEK VSATLEERKEDQYMKMTVCLETEKKSPLSW EDQYMKMTVCLETEKKSPLSWIEEKGPGLK K M T E K K 0 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 9 0 1109.5097 P53004 P53004 201 209 BLVRA Biliverdin reductase A yes yes 2 0.001584 79.906 By MS/MS 1 1.4019 1.1761 NaN 1 Median NaN NaN NaN 0 0 Median 1.4019 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5097500 2008700 3088800 0 0 0 5097500 2008700 3088800 0 0 0 0 0 0 0 0 0 0 0 0 24964 2463 26270 132674 133294;133295 133294 2 MTVCLETEKK VSATLEERKEDQYMKMTVCLETEKKSPLSW DQYMKMTVCLETEKKSPLSWIEEKGPGLKR K M T K K S 0 0 0 0 1 0 2 0 0 0 1 2 1 0 0 0 2 0 0 1 0 0 10 1 1237.6046 P53004 P53004 201 210 BLVRA Biliverdin reductase A yes yes 2;3 0.00084294 66.299 By MS/MS 2 1.3812 1.2445 9.3616 2 Median NaN NaN NaN 0 0 Median 1.3812 1.2445 9.3616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5315800 2288900 3026900 0 0 0 5315800 2288900 3026900 0 0 0 0 0 0 0 0 0 0 0 0 24965 2463 26271 132675;132676 133296;133297;133298;133299 133296 4 MTVNNLHPR LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI PLEGTKMTVNNLHPRVTEEDIVELFCVCGA K M T P R V 0 1 2 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 9 0 1080.5498 F6VRR5;Q9BY77 F6VRR5 299 307 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 0.0020175 75.109 By MS/MS By matching 1 1 0.89974 0.84161 16.197 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93981 0.94374 NaN 1 0 Median 0.86139 0.75053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4935900 2484600 2451300 0 0 0 0 0 0 3639600 1773300 1866300 1296300 711260 585060 0 0 0 0 0 0 24966 1051 26272 132677;132678 133300;133301 133301 2 MVAAATNNLCEAANAAVQGHASQEK LDDGQWSQGLISAARMVAAATNNLCEAANA EAANAAVQGHASQEKLISSAKQVAASTAQL R M V E K L 8 0 3 0 1 2 2 1 1 0 1 1 1 0 0 1 1 0 0 2 0 0 25 0 2555.1857 Q9Y490 Q9Y490 2399 2423 TLN1 Talin-1 yes yes 3 0.045445 9.4587 By MS/MS 2 1.1358 0.99527 2.7199 2 Median NaN NaN NaN 0 0 Median 1.1358 0.99527 2.7199 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7916700 2969800 4946900 0 0 0 7916700 2969800 4946900 0 0 0 0 0 0 0 0 0 0 0 0 24967 4441 26273 132679;132680 133302 133302 1 MVADPPRDSK ______________________________ ______________________________ - M V S K G 1 1 0 2 0 0 0 0 0 0 0 1 1 0 2 1 0 0 0 1 0 0 10 1 1114.5441 Q15758 Q15758 1 10 SLC1A5 Neutral amino acid transporter B(0) yes yes 2 0.0023204 51.346 By MS/MS 1 0.80849 0.81719 NaN 1 Median 0.80849 0.81719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2723700 1342700 1381000 2723700 1342700 1381000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24968 2968 26274 132681 133303 133303 1 MVADRVEVYSR ______________________________ ______________________________ - M V S R S 1 2 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 3 0 0 11 1 1323.6605 I3L0K7 I3L0K7 1 11 TRAP1 yes yes 3 0.00066639 64.55 By MS/MS By MS/MS 1 1 0.6197 0.61055 NaN 1 Median 0.6197 0.61055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7660200 4559800 3100400 7660200 4559800 3100400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24969 1269 26275 132682;132683 133304;133305 133304 2 MVAFNNQIDHEVTVEK ASTLFPAIEKNIVKKMVAFNNQIDHEVTVE VAFNNQIDHEVTVEKKWGQKGGPWEFNLRD K M V E K K 1 0 2 1 0 1 2 0 1 1 0 1 1 1 0 0 1 0 0 3 0 0 16 0 1872.904 Q9NU22 Q9NU22 1920 1935 MDN1 Midasin yes yes 3 3.5534E-05 51.147 By matching By MS/MS By matching 1 1 1 1.0531 0.93782 12 3 Plateau NaN NaN NaN 0 0 Median 1.0239 0.89627 NaN 1 0 Median 1.0532 1.1244 NaN 1 0 Median 1.0088 0.93782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20413000 9916000 10497000 0 0 0 2022400 894270 1128100 17760000 8747800 9012000 630780 273950 356840 0 0 0 0 0 0 24970 4112 26276 132684;132685;132686 133306;133307 133306 2 MVAFNNQIDHEVTVEKK ASTLFPAIEKNIVKKMVAFNNQIDHEVTVE AFNNQIDHEVTVEKKWGQKGGPWEFNLRDL K M V K K W 1 0 2 1 0 1 2 0 1 1 0 2 1 1 0 0 1 0 0 3 0 0 17 1 2000.999 Q9NU22 Q9NU22 1920 1936 MDN1 Midasin yes yes 3;4 4.9929E-06 76.151 By MS/MS 3 1.0901 1.235 10.219 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0901 1.235 10.219 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37297000 19197000 18100000 0 0 0 0 0 0 37297000 19197000 18100000 0 0 0 0 0 0 0 0 0 24971 4112 26277 132687;132688;132689 133308;133309;133310;133311 133309 4 MVAYLQDSALDDERLASK DDEEGLKHLEQQAEKMVAYLQDSALDDERL YLQDSALDDERLASKLQEHRAKGVSIPLMH K M V S K L 3 1 0 3 0 1 1 0 0 0 3 1 1 0 0 2 0 0 1 1 0 0 18 1 2023.9885 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1 Q6Y7W6 498 515 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 3.0373E-08 90.714 By MS/MS 2 0.82177 0.87801 38.908 2 Median 0.82177 0.87801 38.908 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13716000 7106600 6609900 13716000 7106600 6609900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24972 3192 26278 132690;132691 133312;133313 133312 2 MVDPEKPQLGMIDR CMEKIEKGQVRLSKKMVDPEKPQLGMIDRW KMVDPEKPQLGMIDRWYHPGCFVKNREELG K M V D R W 0 1 0 2 0 1 1 1 0 1 1 1 2 0 2 0 0 0 0 1 0 0 14 1 1627.8062 P09874 P09874 143 156 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.8917E-08 111.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 18 16 1 1 0.814 0.84361 31.288 38 Median 0.59018 0.61476 24.184 2 0 Median NaN NaN NaN 0 0 Median 0.71797 0.81494 25.706 18 1 Median 0.93476 0.90036 36.88 16 1 Median 0.86213 0.94851 NaN 1 1 Median 0.4825 0.52426 NaN 1 0 Median 1189300000 654230000 535040000 19255000 11473000 7782200 0 0 0 772480000 445980000 326500000 379400000 186800000 192600000 17856000 9829100 8026600 275060 152620 122440 24973 1922 26279;26280;26281 132692;132693;132694;132695;132696;132697;132698;132699;132700;132701;132702;132703;132704;132705;132706;132707;132708;132709;132710;132711;132712;132713;132714;132715;132716;132717;132718;132719;132720;132721;132722;132723;132724;132725;132726;132727;132728;132729 133314;133315;133316;133317;133318;133319;133320;133321;133322;133323;133324;133325;133326;133327;133328;133329;133330;133331;133332;133333;133334;133335;133336;133337;133338;133339;133340;133341;133342;133343;133344;133345;133346;133347;133348;133349;133350;133351;133352;133353;133354;133355;133356;133357;133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368;133369 133336 702;703 56 MVDREQLVQK ______________________________ ______________________________ - M V Q K A 0 1 0 1 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 10 1 1244.6547 P61981 P61981 1 10 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 3 0.05691 25.808 By MS/MS 1 0.81142 0.75724 NaN 1 Median NaN NaN NaN 0 0 Median 0.81142 0.75724 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2300600 1462900 837690 0 0 0 2300600 1462900 837690 0 0 0 0 0 0 0 0 0 0 0 0 24974 2566 26282 132730 133370 133370 1 MVDVVEKEDVNEAIR LLAILRLSTALARLRMVDVVEKEDVNEAIR MVDVVEKEDVNEAIRLMEMSKDSLLGDKGQ R M V I R L 1 1 1 2 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 4 0 0 15 1 1744.8665 P33993 P33993 621 635 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 4.7447E-14 113.22 By MS/MS By MS/MS By MS/MS By matching 4 3 5 1 0.87921 0.89956 20.072 12 Median 0.81275 0.83482 12.063 4 1 Median 0.98532 1.0913 12.129 3 0 Plateau 0.64062 0.70458 23.057 4 1 Median 1.0798 1.0239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145480000 75393000 70089000 79710000 41605000 38105000 22000000 9890100 12110000 41839000 22944000 18895000 1932500 953410 979040 0 0 0 0 0 0 24975 2225 26283;26284 132731;132732;132733;132734;132735;132736;132737;132738;132739;132740;132741;132742;132743 133371;133372;133373;133374;133375;133376;133377;133378;133379;133380;133381 133374 963 11 MVEADRPGK ______________________________ ______________________________ - M V G K L 1 1 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 9 1 1001.4964 P38159;H3BT71;H3BR27;O75526;H3BNC1;Q96E39;A0A1B0GUK8 P38159 1 9 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 no no 2 0.0010547 73.248 By MS/MS 2 0.81141 0.83408 8.0018 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81141 0.83408 8.0018 2 0 Median NaN NaN NaN 0 0 Median 27194000 14549000 12644000 0 0 0 0 0 0 0 0 0 0 0 0 27194000 14549000 12644000 0 0 0 24976 2273;3632 26285;26286 132744;132745 133382;133383;133384 133384 1026 3 MVEGFFDR SEAVADREDDPNFFKMVEGFFDRGASIVED DDPNFFKMVEGFFDRGASIVEDKLVEDLRT K M V D R G 0 1 0 1 0 0 1 1 0 0 0 0 1 2 0 0 0 0 0 1 0 0 8 0 999.4484 P00367;P49448 P00367 69 76 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.0038087 85.212 By MS/MS By matching By MS/MS 3 3 1 1.1516 1.1558 20.216 7 Median 0.89901 0.91243 9.2318 3 0 Median 1.4912 1.2558 15.709 3 0 Median 1.1516 1.1993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42364000 20031000 22334000 28014000 14022000 13992000 10718000 4185400 6532600 3632600 1823400 1809100 0 0 0 0 0 0 0 0 0 24977 1814 26287 132746;132747;132748;132749;132750;132751;132752 133385;133386;133387;133388 133386 4 MVEGYQGLR EDMTAKEKLLLWSQRMVEGYQGLRCDNFTS LLWSQRMVEGYQGLRCDNFTSSWRDGRLFN R M V L R C 0 1 0 0 0 1 1 2 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1051.5121 Q15149;H0YDN1;E9PMV1;E9PKG0 Q15149 308 316 PLEC Plectin yes no 2 0.00098548 86.953 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.5067 1.2049 12.895 5 Median 1.1701 1.1409 NaN 1 1 Median 1.5067 1.2049 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8065 1.5729 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.461 1.2057 4.0038 2 0 Median 48238000 19584000 28654000 15243000 6773300 8470200 27853000 11001000 16852000 0 0 0 2089200 702490 1386700 0 0 0 3052800 1107300 1945500 24978 2933 26288 132753;132754;132755;132756;132757 133389;133390;133391 133390 3 MVEHILNTEENWNSWK QLLSENPPDGERFSKMVEHILNTEENWNSW VEHILNTEENWNSWKNEGCPSFVKDRTSDT K M V W K N 0 0 3 0 0 0 3 0 1 1 1 1 1 0 0 1 1 2 0 1 0 0 16 0 2028.9364 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 377 392 THOC1 THO complex subunit 1 yes no 3 1.6079E-05 78.285 By MS/MS 1 0.9534 0.9565 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9534 0.9565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17771000 8988400 8782100 0 0 0 0 0 0 17771000 8988400 8782100 0 0 0 0 0 0 0 0 0 24979 62 26289 132758 133392;133393 133393 2 MVEKEEAGGGISEEEAAQYDR ______________________________ AGGGISEEEAAQYDRQIRLWGLEAQKRLRA - M V D R Q 3 1 0 1 0 1 6 3 0 1 0 1 1 0 0 1 0 0 1 1 0 0 21 1 2297.0118 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0R375 Q9UBE0 1 21 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 3 2.8133E-06 44.729 By MS/MS 1 0.98067 1.0507 NaN 1 Median 0.98067 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7036600 3483100 3553500 7036600 3483100 3553500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24980 4237 26290 132759 133394 133394 1 MVETLSNLLR ARTFEKIEEVSARLRMVETLSNLLRSVVAL SARLRMVETLSNLLRSVVALSPPDLLPVLY R M V L R S 0 1 1 0 0 0 1 0 0 0 3 0 1 0 0 1 1 0 0 1 0 0 10 0 1174.638 F5GZ28;P18858;M0R0Q7;B4E135 F5GZ28 240 249 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.00083236 70.919 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 0.81973 0.79046 22.633 6 Median 0.71402 0.68954 NaN 1 0 Median 0.912 0.77924 NaN 1 0 Median 0.73679 0.80183 NaN 1 0 Median 0.88718 0.74558 33.827 2 0 Median NaN NaN NaN 0 0 Median 1.3675 1.113 NaN 1 0 Median 14363000 7405100 6958100 7006400 3804400 3202100 3011200 1359200 1652000 1661900 995120 666760 1510600 751300 759260 0 0 0 1173100 495150 677990 24981 1014 26291 132760;132761;132762;132763;132764;132765 133395;133396 133395 2 MVFINNIALAQIK QKMLNGLEDSIGLSKMVFINNIALAQIKNN SKMVFINNIALAQIKNNNIDAAIENIENML K M V I K N 2 0 2 0 0 1 0 0 0 3 1 1 1 1 0 0 0 0 0 1 0 0 13 0 1473.8378 P42704 P42704 1177 1189 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00072604 66.692 By MS/MS By matching By MS/MS By matching By matching 4 1 1 1 1 1.2554 1.1849 25.613 8 Median 1.1357 1.1123 14.593 4 0 Median 1.4838 1.2517 NaN 1 0 Median 1.0583 1.1419 NaN 1 0 Median 1.4455 1.2295 NaN 1 0 Median 2.1856 2.2455 NaN 1 0 Median NaN NaN NaN 0 0 Median 47121000 20754000 26367000 24954000 11488000 13466000 18882000 7832000 11050000 2237900 1118300 1119600 418500 171110 247390 628820 144960 483860 0 0 0 24982 2315 26292;26293 132766;132767;132768;132769;132770;132771;132772;132773 133397;133398;133399;133400;133401 133398 1056 5 MVFQENSR ATQGCLQNTVNDFWRMVFQENSRVIVMTTK TVNDFWRMVFQENSRVIVMTTKEVERGKSK R M V S R V 0 1 1 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 8 0 1009.4651 Q06124;A0A0U1RRI0 Q06124 344 351 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 2.2273E-06 124.83 By MS/MS By MS/MS By matching 1 1 1 1.0496 0.91653 20.565 3 Median 1.3083 1.3027 NaN 1 0 Median 1.0496 0.90829 NaN 1 1 Median 0.93809 0.91653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9961600 4491600 5470000 2870700 984010 1886700 6502100 3177200 3324900 588830 330420 258410 0 0 0 0 0 0 0 0 0 24983 2721 26294 132774;132775;132776 133402;133403 133403 2 MVGDVTGAQAYASTAK GFIAFAYSVKSRDRKMVGDVTGAQAYASTA VGDVTGAQAYASTAKCLNIWALILGILMTI K M V A K C 4 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 1 2 0 0 16 0 1568.7505 H7BYV1;E9PS44;E9PQN9;P13164;Q01629;Q01628 H7BYV1 17 32 IFITM2;IFITM3;IFITM1 Interferon-induced transmembrane protein 1;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 3 yes no 2;3 2.1399E-14 176.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 7 3 2 1 2 1.296 1.0817 58.834 20 Median 1.1698 1.0799 13.493 6 0 Median 1.2651 1.0567 7.6299 7 0 Median 1.2225 1.2221 40.013 2 0 Median 4.2591 3.4725 18.227 2 1 Median 5.4023 5.71 NaN 1 0 Median 3.6297 2.9565 65.584 2 1 Median 298420000 124280000 174140000 74939000 32174000 42766000 208770000 88311000 120460000 5368200 2042700 3325500 2539200 475290 2063900 1908300 270750 1637500 4887600 1006800 3880700 24984 981 26295;26296 132777;132778;132779;132780;132781;132782;132783;132784;132785;132786;132787;132788;132789;132790;132791;132792;132793;132794;132795;132796;132797 133404;133405;133406;133407;133408;133409;133410;133411;133412;133413;133414;133415;133416;133417;133418;133419;133420;133421;133422;133423;133424;133425;133426;133427;133428;133429;133430 133421 341 26 MVGFIIGR HQRTVITEEFKVPDKMVGFIIGRGGEQISR EFKVPDKMVGFIIGRGGEQISRIQAESGCK K M V G R G 0 1 0 0 0 0 0 2 0 2 0 0 1 1 0 0 0 0 0 1 0 0 8 0 891.50004 Q96I24 Q96I24 88 95 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0023286 122.15 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 5 2 3 4 1.4007 1.2576 16.192 16 Median 1.0434 1.0171 NaN 1 0 Median 1.4657 1.2937 NaN 1 0 Median 1.3823 1.3712 21.528 5 0 Median 1.6378 1.3933 22.967 2 0 Median 1.1147 1.1824 2.2827 3 1 Median 1.6529 1.3612 13.351 4 0 Median 74057000 32697000 41360000 4683300 2411300 2272000 546510 228070 318440 50357000 22007000 28350000 2339300 866580 1472700 12707000 5864300 6842800 3424400 1320500 2104000 24985 3673 26297;26298 132798;132799;132800;132801;132802;132803;132804;132805;132806;132807;132808;132809;132810;132811;132812;132813 133431;133432;133433;133434;133435;133436;133437;133438;133439;133440;133441 133436 1805 11 MVGGIAQIIAAQEEMLR AFEEQENETVVVKEKMVGGIAQIIAAQEEM GGIAQIIAAQEEMLRKERELEEARKKLAQI K M V L R K 3 1 0 0 0 2 2 2 0 3 1 0 2 0 0 0 0 0 0 1 0 0 17 0 1828.9539 Q9Y490 Q9Y490 2494 2510 TLN1 Talin-1 yes yes 2 3.0432E-05 53.528 By MS/MS By matching 1 2 1.1355 0.96614 10.182 3 Median 0.94682 0.95062 NaN 1 0 Median 1.2326 1.0506 11.858 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4934300 1751400 3183000 1223100 579910 643170 3711200 1171400 2539800 0 0 0 0 0 0 0 0 0 0 0 0 24986 4441 26299 132814;132815;132816 133442;133443 133443 2 MVGGIAQIIAAQEEMLRK AFEEQENETVVVKEKMVGGIAQIIAAQEEM GIAQIIAAQEEMLRKERELEEARKKLAQIR K M V R K E 3 1 0 0 0 2 2 2 0 3 1 1 2 0 0 0 0 0 0 1 0 0 18 1 1957.0489 Q9Y490 Q9Y490 2494 2511 TLN1 Talin-1 yes yes 3 0.050499 8.9424 By MS/MS By matching 1 1 1.3038 1.3904 27.216 2 Median NaN NaN NaN 0 0 Median 1.1969 1.147 NaN 1 0 Median 1.4203 1.6854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2956800 1150800 1805900 0 0 0 2117400 881530 1235800 839400 269310 570080 0 0 0 0 0 0 0 0 0 24987 4441 26300 132817;132818 133444 133444 1 MVGGVLVER IDTLKEVDETRKCYRMVGGVLVERTVKEVL TRKCYRMVGGVLVERTVKEVLPALENNKEQ R M V E R T 0 1 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 3 0 0 9 0 958.52699 Q9UHV9 Q9UHV9 73 81 PFDN2 Prefoldin subunit 2 yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By matching 2 2 1 1.1622 0.9731 45.232 5 Median 1.1954 1.1626 9.205 2 0 Median 1.1685 0.96901 0.59583 2 0 Median 0.32504 0.39625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89868000 40796000 49072000 59875000 27416000 32459000 29031000 12652000 16379000 962560 727720 234840 0 0 0 0 0 0 0 0 0 24988 4284 26301;26302 132819;132820;132821;132822;132823 133445;133446;133447;133448;133449;133450;133451;133452 133449 1917 8 MVGVPAALDMMLTGR LGALPGAGGTQRLPKMVGVPAALDMMLTGR MVGVPAALDMMLTGRSIRADRAKKMGLVDQ K M V G R S 2 1 0 1 0 0 0 2 0 0 2 0 3 0 1 0 1 0 0 2 0 0 15 0 1560.7826 H0YFD6;P40939;A0A2R8YG21;A0A2R8Y688 H0YFD6 191 205 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 3.3831E-09 98.353 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 0.93373 0.93244 61.688 10 Median 0.90949 0.88684 9.8949 4 0 Median 1.1982 1.0368 115.56 3 0 Median 0.96026 0.98694 2.1098 2 0 Median NaN NaN NaN 0 0 Median 1.1863 1.2671 NaN 1 1 Median NaN NaN NaN 0 0 Median 63920000 31464000 32455000 25388000 13040000 12348000 16823000 7844000 8978600 20362000 10008000 10354000 0 0 0 1347400 572790 774630 0 0 0 24989 1180 26303;26304 132824;132825;132826;132827;132828;132829;132830;132831;132832;132833 133453;133454;133455;133456;133457;133458;133459;133460;133461;133462;133463;133464;133465;133466;133467;133468;133469;133470;133471 133463 396 19 MVIITGPPEAQFK SIKIAPPETPDSKVRMVIITGPPEAQFKAQ VRMVIITGPPEAQFKAQGRIYGKLKEENFF R M V F K A 1 0 0 0 0 1 1 1 0 2 0 1 1 1 2 0 1 0 0 1 0 0 13 0 1429.7639 Q9NZI8;F8W930;Q9Y6M1;O00425 Q9NZI8 453 465 IGF2BP1;IGF2BP2;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 3 no no 2 3.8838E-07 122.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 7 5 3 0.89311 0.79678 24.295 26 Median 0.59426 0.56019 33.328 4 0 Median 0.90483 0.75308 1.3041 3 0 Plateau 0.87672 0.90008 17.175 4 0 Median 0.99471 0.85424 15.332 7 0 Median 0.95201 0.95861 10.617 5 1 Median 0.91735 0.74677 4.2453 3 0 Median 321960000 174570000 147390000 111990000 64600000 47394000 39368000 20736000 18632000 66134000 33293000 32841000 11821000 5975400 5846000 82456000 45140000 37317000 10188000 4824800 5363000 24990 4188;1088;1462 26305;26306 132834;132835;132836;132837;132838;132839;132840;132841;132842;132843;132844;132845;132846;132847;132848;132849;132850;132851;132852;132853;132854;132855;132856;132857;132858;132859 133472;133473;133474;133475;133476;133477;133478;133479;133480;133481;133482;133483;133484;133485;133486;133487;133488;133489;133490;133491;133492;133493;133494;133495;133496;133497;133498;133499;133500;133501 133484 368 29 MVINHLEK AQTTRTAYGPNGMNKMVINHLEKLFVTNDA GPNGMNKMVINHLEKLFVTNDAATILRELE K M V E K L 0 0 1 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 982.52699 P50990;H7C4C8 P50990 55 62 CCT8 T-complex protein 1 subunit theta yes no 2 0.0022847 110.31 By MS/MS By MS/MS 3 2 1.0018 0.93793 6.0688 5 Median 1.0018 0.92962 7.2885 3 0 Plateau 1.1248 0.9493 0.13646 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40693000 19935000 20758000 20291000 10031000 10260000 20402000 9904000 10498000 0 0 0 0 0 0 0 0 0 0 0 0 24991 2423 26307 132860;132861;132862;132863;132864 133502;133503;133504;133505;133506 133505 5 MVIPGGIDVHTR LIVPGGVKTIEAHSRMVIPGGIDVHTRFQM HSRMVIPGGIDVHTRFQMPDQGMTSADDFF R M V T R F 0 1 0 1 0 0 0 2 1 2 0 0 1 0 1 0 1 0 0 2 0 0 12 0 1293.6863 Q16555;A0A1C7CYX9;E5RFU4 Q16555 64 75 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.0029394 72.643 By MS/MS 1 0.69624 0.66338 NaN 1 Median 0.69624 0.66338 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10395000 6084100 4311300 10395000 6084100 4311300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24992 328 26308 132865 133507 133507 1 MVITAPPVTNQPVTPK FNVDTLPAYAKRSQRMVITAPPVTNQPVTP VITAPPVTNQPVTPKALTAGQNRPHPPHIP R M V P K A 1 0 1 0 0 1 0 0 0 1 0 1 1 0 4 0 3 0 0 3 0 0 16 0 1691.928 Q7Z7C8;B4DZU5;A0A0A0MRR3 Q7Z7C8 117 132 TAF8 Transcription initiation factor TFIID subunit 8 yes no 2 1.8355E-06 88.187 By MS/MS By matching 1 1 0.48835 0.45428 13.499 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48363 0.49978 NaN 1 0 Median 0.49313 0.41292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13288000 8874400 4413600 0 0 0 0 0 0 12650000 8457700 4192500 637750 416680 221070 0 0 0 0 0 0 24993 3255 26309 132866;132867 133508;133509 133508 2 MVLAAAGGVEHQQLLDLAQK ADLTEYLSTHYKAPRMVLAAAGGVEHQQLL AGGVEHQQLLDLAQKHLGGIPWTYAEDAVP R M V Q K H 4 0 0 1 0 3 1 2 1 0 4 1 1 0 0 0 0 0 0 2 0 0 20 0 2091.1147 P31930 P31930 229 248 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 3 7.9134E-05 37.552 By matching By MS/MS By matching 1 1 1 1.4251 1.2511 11.524 3 Median NaN NaN NaN 0 0 Median 1.4251 1.2511 NaN 1 0 Median 1.0919 1.0577 NaN 1 0 Median 1.4783 1.3188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12305000 5707400 6597800 0 0 0 663670 266090 397580 10860000 5092400 5767500 781600 348880 432730 0 0 0 0 0 0 24994 2205 26310 132868;132869;132870 133510;133511 133511 2 MVLDHLVIQR KGSVEEDILERAKKKMVLDHLVIQRMDTTG RAKKKMVLDHLVIQRMDTTGKTVLHTGSAP K M V Q R M 0 1 0 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1222.6856 O14647;A0A1B0GTU9;O14646 O14646 930 939 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 3 0.00041624 64.654 By matching By MS/MS 1 1 1.1525 1.1815 21.5 2 Median 1.0121 1.0148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3124 1.3754 NaN 1 0 Median NaN NaN NaN 0 0 Median 5386400 2125200 3261300 1071900 478270 593590 0 0 0 0 0 0 0 0 0 4314600 1646900 2667700 0 0 0 24995 1486;321 26311 132871;132872 133512;133513 133513 2 MVLDSLR FAGISVTKELSATTRMVLDSLRTVVIWALS KELSATTRMVLDSLRTVVIWALSLALGWEA R M V L R T 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 7 0 832.44767 Q8N357 Q8N357 293 299 SLC35F6 Solute carrier family 35 member F6 yes yes 2 0.053242 38.792 By MS/MS 1 1.2489 1.0586 NaN 1 Median NaN NaN NaN 0 0 Median 1.2489 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4002700 1801600 2201100 0 0 0 4002700 1801600 2201100 0 0 0 0 0 0 0 0 0 0 0 0 24996 3365 26312 132873 133514 133514 1 MVLESVAR ______________________________ ______________________________ - M V A R I 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 8 0 903.48479 Q8N5K1;A0A2R8Y540;I3L1N9 Q8N5K1 1 8 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 0.049966 57.281 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24997 3379 26313 132874;132875 133515;133516 133515 2 MVLNESLK GIDRLRLDKFYMLMRMVLNESLKVLKMQGW KFYMLMRMVLNESLKVLKMQGWEERQIEEL R M V L K V 0 0 1 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 8 0 932.5001 P56182 P56182 124 131 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.02469 43.218 By matching By MS/MS By matching 1 1 1 0.9081 0.90939 17.948 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1327 1.1656 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86277 0.82251 NaN 1 0 Median 0.9081 0.90939 NaN 1 0 Median 10169000 5302100 4866500 0 0 0 0 0 0 1942200 853900 1088300 0 0 0 7873200 4268000 3605200 353180 180160 173020 24998 2507 26314 132876;132877;132878 133517 133517 1 MVLVGDVK ALIHKERKKANEVDRMVLVGDVKDRVAILV KANEVDRMVLVGDVKDRVAILVDDMADTCG R M V V K D 0 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 3 0 0 8 0 859.48372 B1ALA9;P60891;A0A2R8Y7H4;B7ZB02;P11908 B1ALA9 172 179 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 2 0.0076735 66.073 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.0769 0.97828 16.949 7 Median 1.1211 1.0273 6.9209 2 0 Median 1.1091 0.94449 20.189 2 0 Median 1.0005 0.95985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2932 1.0755 32.686 2 0 Median 87078000 39692000 47385000 61279000 28676000 32603000 20903000 8998500 11904000 2265600 997670 1267900 0 0 0 0 0 0 2630600 1020500 1610100 24999 571;1972 26315 132879;132880;132881;132882;132883;132884;132885 133518;133519;133520 133519 3 MVLVGDVKDR ALIHKERKKANEVDRMVLVGDVKDRVAILV NEVDRMVLVGDVKDRVAILVDDMADTCGTI R M V D R V 0 1 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 3 0 0 10 1 1130.6118 B1ALA9;P60891;A0A2R8Y7H4;B7ZB02;P11908 B1ALA9 172 181 PRPS1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2 no no 2 2.5724E-05 155.07 By MS/MS By MS/MS 2 1 1.1635 1.1811 4.2668 3 Median 1.1458 1.1948 1.6292 2 0 Median 1.253 1.1128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60180000 27513000 32667000 46909000 21494000 25415000 13271000 6019100 7251500 0 0 0 0 0 0 0 0 0 0 0 0 25000 571;1972 26316 132886;132887;132888 133521;133522;133523;133524 133522 4 MVMEKPSPLLVGR ______________________________ ______________________________ - M V G R E 0 1 0 0 0 0 1 1 0 0 2 1 2 0 2 1 0 0 0 2 0 0 13 1 1455.7942 Q13283;E5RIZ6;E5RIF8;E5RH42;E5RJU8;E5RI46;E5RH00;D6R9X5;D6R9A4;Q9UN86;D6RAC7;D6RB17;D6RGJ4;D6RBM9;D6REX8;D6RBR0;D6RE13;D6RBW8 Q13283 1 13 G3BP1;G3BP2 Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2 no no 2 0.00019076 74.162 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.96293 0.97929 49.489 4 Median 0.70534 0.70834 NaN 1 0 Median 1.1158 1.0329 NaN 1 0 Median 0.83098 0.92851 NaN 1 0 Median 2.4482 2.2447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11386000 6576100 4810000 6029900 3702500 2327300 708460 320340 388120 4496000 2506200 1989900 151680 47045 104640 0 0 0 0 0 0 25001 2803;4341 26317 132889;132890;132891;132892 133525;133526;133527 133526 3 MVMETIEK RIVDDLKDEAEQYRKMVMETIEKIMGNLGA EAEQYRKMVMETIEKIMGNLGAADIDHKLE K M V E K I 0 0 0 0 0 0 2 0 0 1 0 1 2 0 0 0 1 0 0 1 0 0 8 0 979.47184 O75533 O75533 867 874 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0041451 85.064 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 1 1.0255 1.0288 6.886 9 Median NaN NaN NaN 0 0 Median 1.1702 1.0072 12.462 2 0 Median 0.96745 1.0332 8.1428 2 1 Median NaN NaN NaN 0 0 Median 0.97999 1.0264 6.7303 4 2 Median 1.2609 1.035 NaN 1 0 Median 107960000 51304000 56657000 0 0 0 28031000 12710000 15321000 15401000 8016800 7383800 0 0 0 59444000 28327000 31116000 5085600 2249100 2836500 25002 1683 26318;26319 132893;132894;132895;132896;132897;132898;132899;132900;132901 133528;133529;133530;133531;133532;133533;133534;133535;133536;133537;133538 133529 545;546 11 MVMIQDGPLPTGADK GGETIKQLQERTGVKMVMIQDGPLPTGADK MVMIQDGPLPTGADKPLRITGDAFKVQQAR K M V D K P 1 0 0 2 0 1 0 2 0 1 1 1 2 0 2 0 1 0 0 1 0 0 15 0 1571.7687 Q96I24 Q96I24 196 210 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.036005 35.414 By MS/MS 1 0.96883 0.83284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96883 0.83284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 931810 483380 448430 0 0 0 0 0 0 0 0 0 931810 483380 448430 0 0 0 0 0 0 25003 3673 26320 132902 133539 133539 1 MVMIQDGPLPTGADKPLR GGETIKQLQERTGVKMVMIQDGPLPTGADK IQDGPLPTGADKPLRITGDAFKVQQAREMV K M V L R I 1 1 0 2 0 1 0 2 0 1 2 1 2 0 3 0 1 0 0 1 0 0 18 1 1938.0067 Q96I24 Q96I24 196 213 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 2.5445E-31 196.38 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 8 6 5 3 0.71168 0.7467 25.067 24 Median 0.52262 0.52372 NaN 1 0 Median 0.75322 0.69486 NaN 1 0 Median 0.69461 0.76545 15.999 8 0 Median 0.87813 0.80516 19.454 6 1 Median 0.69263 0.72722 16.727 5 0 Median 0.76352 0.70323 56.218 3 0 Median 330570000 194720000 135850000 18894000 11423000 7470100 1073500 614710 458740 228350000 135780000 92562000 18817000 10382000 8435500 60636000 34743000 25893000 2804100 1771200 1032900 25004 3673 26321;26322;26323 132903;132904;132905;132906;132907;132908;132909;132910;132911;132912;132913;132914;132915;132916;132917;132918;132919;132920;132921;132922;132923;132924;132925;132926 133540;133541;133542;133543;133544;133545;133546;133547;133548;133549;133550;133551;133552;133553;133554;133555;133556;133557;133558;133559;133560;133561;133562;133563;133564;133565;133566 133546 1806;1807 27 MVMIQDGPQNTGADK GGETIKQLQERAGVKMVMIQDGPQNTGADK MVMIQDGPQNTGADKPLRITGDPYKVQQAK K M V D K P 1 0 1 2 0 2 0 2 0 1 0 1 2 0 1 0 1 0 0 1 0 0 15 0 1603.7334 Q96AE4;E9PEB5 Q96AE4 219 233 FUBP1 Far upstream element-binding protein 1 yes no 2 0.0061453 34.378 By MS/MS 2 0.86019 0.74643 9.3154 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86019 0.74643 9.3154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2033700 972210 1061400 0 0 0 0 0 0 0 0 0 2033700 972210 1061400 0 0 0 0 0 0 25005 3599 26324 132927;132928 133567 133567 1 MVMIQDGPQNTGADKPLR GGETIKQLQERAGVKMVMIQDGPQNTGADK IQDGPQNTGADKPLRITGDPYKVQQAKEMV K M V L R I 1 1 1 2 0 2 0 2 0 1 1 1 2 0 2 0 1 0 0 1 0 0 18 1 1969.9714 Q96AE4;E9PEB5 Q96AE4 219 236 FUBP1 Far upstream element-binding protein 1 yes no 2;3 9.6764E-15 153.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 13 1 2 0.87814 0.87437 10.539 24 Median 0.75759 0.77501 12.721 2 0 Median NaN NaN NaN 0 0 Median 0.86654 0.92384 3.4844 6 0 Median 0.95346 0.88216 9.5601 13 1 Median 0.76891 0.84587 NaN 1 0 Median 0.81195 0.70645 8.1021 2 0 Median 597570000 299710000 297870000 22231000 12634000 9596800 0 0 0 417920000 209440000 208480000 137520000 67256000 70262000 14410000 7754600 6655500 5489900 2618500 2871400 25006 3599 26325;26326;26327 132929;132930;132931;132932;132933;132934;132935;132936;132937;132938;132939;132940;132941;132942;132943;132944;132945;132946;132947;132948;132949;132950;132951;132952 133568;133569;133570;133571;133572;133573;133574;133575;133576;133577;133578;133579;133580;133581;133582;133583;133584;133585;133586;133587;133588;133589;133590;133591;133592;133593;133594;133595;133596;133597;133598;133599;133600;133601;133602;133603;133604;133605;133606;133607;133608;133609;133610;133611 133571 1788;1789 44 MVMLGLK LLETGHDILFFWVARMVMLGLKLTGRLPFR ILFFWVARMVMLGLKLTGRLPFREVYLHAI R M V L K L 0 0 0 0 0 0 0 1 0 0 2 1 2 0 0 0 0 0 0 1 0 0 7 0 790.4445 P26640;A0A140T936;H0Y426 P26640 833 839 VARS Valine--tRNA ligase yes no 2 0.056278 50.12 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 331230 0 331230 0 0 0 0 0 0 0 0 0 331230 0 331230 0 0 0 0 0 0 25007 2148 26328 132953 133612 133612 1 MVNDAEKFAEEDKK ITNDQNRLTPEEIERMVNDAEKFAEEDKKL RMVNDAEKFAEEDKKLKERIDTRNELESYA R M V K K L 2 0 1 2 0 0 3 0 0 0 0 3 1 1 0 0 0 0 0 1 0 0 14 2 1652.7716 P11021 P11021 541 554 HSPA5 78 kDa glucose-regulated protein yes yes 3;4 5.9381E-06 86.291 By MS/MS By matching By matching 4 1 1 1.1226 1.1338 22.767 6 Median 1.111 1.1135 3.423 4 0 Median NaN NaN NaN 0 0 Median 1.6665 1.9267 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2283 1.3694 NaN 1 0 Median NaN NaN NaN 0 0 Median 54318000 23964000 30355000 51156000 22680000 28477000 0 0 0 1002900 340890 661970 0 0 0 2159500 943470 1216000 0 0 0 25008 1948 26329 132954;132955;132956;132957;132958;132959 133613;133614;133615;133616;133617;133618;133619 133616 7 MVNDAEPDTK SSNSESKKKKKKKRKMVNDAEPDTKKAKTE KKKRKMVNDAEPDTKKAKTENKGKSEEESA K M V T K K 1 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1118.4914 Q9NVP1 Q9NVP1 117 126 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.061346 26.384 By matching By MS/MS 1 1 0.91057 0.86766 7.5539 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93314 0.82253 NaN 1 0 Median 0.88854 0.91527 NaN 1 0 Median NaN NaN NaN 0 0 Median 2038500 1083800 954660 0 0 0 0 0 0 0 0 0 116430 59387 57041 1922100 1024500 897620 0 0 0 25009 4137 26330 132960;132961 133620 133620 1 MVNDAEPDTKK SSNSESKKKKKKKRKMVNDAEPDTKKAKTE KKRKMVNDAEPDTKKAKTENKGKSEEESAE K M V K K A 1 0 1 2 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1246.5864 Q9NVP1 Q9NVP1 117 127 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3 0.0076856 46.158 By MS/MS By MS/MS 2 2 0.92713 1.0438 11.359 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92839 1.0558 4.6181 2 0 Median NaN NaN NaN 0 0 Median 0.85101 0.95169 16.063 2 0 Median NaN NaN NaN 0 0 Median 6186500 3035800 3150700 0 0 0 0 0 0 4828800 2450200 2378600 0 0 0 1357700 585620 772100 0 0 0 25010 4137 26331 132962;132963;132964;132965 133621;133622;133623;133624;133625;133626 133623 6 MVNFTVDQIR ______________________________ ______________________________ - M V I R A 0 1 1 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 10 0 1221.6176 P13639 P13639 1 10 EEF2 Elongation factor 2 yes yes 2 0.00037009 81.594 By MS/MS 2 1.2877 1.2537 1.6193 2 Median 1.2877 1.2537 1.6193 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9472500 3907400 5565100 9472500 3907400 5565100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25011 1992 26332 132966;132967 133627;133628;133629 133627 3 MVNHFIAEFK TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK DFDNRMVNHFIAEFKRKHKKDISENKRAVR R M V F K R 1 0 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 10 0 1234.6169 P11142;E9PKE3;E9PN89;A8K7Q2 P11142 237 246 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 3.0549E-05 143.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 7 7 6 9 5 1.2079 1.0878 15.656 44 Median 1.2184 1.0878 11 10 0 Median 1.2253 1.021 12.306 7 0 Median 1.1161 1.1081 17.167 7 0 Median 1.2373 1.0601 14.253 6 0 Median 1.0975 1.1088 24.6 9 0 Median 1.2501 1.0316 6.2823 5 0 Median 1511200000 681760000 829460000 799240000 355870000 443370000 299990000 134740000 165260000 260930000 122700000 138230000 49673000 21461000 28212000 88642000 41214000 47428000 12747000 5779600 6967500 25012 1950 26333;26334 132968;132969;132970;132971;132972;132973;132974;132975;132976;132977;132978;132979;132980;132981;132982;132983;132984;132985;132986;132987;132988;132989;132990;132991;132992;132993;132994;132995;132996;132997;132998;132999;133000;133001;133002;133003;133004;133005;133006;133007;133008;133009;133010;133011 133630;133631;133632;133633;133634;133635;133636;133637;133638;133639;133640;133641;133642;133643;133644;133645;133646;133647;133648;133649;133650;133651;133652;133653;133654;133655;133656;133657;133658;133659;133660;133661;133662;133663;133664;133665;133666;133667;133668;133669;133670;133671 133642 729 42 MVNHFIAEFKR TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK FDNRMVNHFIAEFKRKHKKDISENKRAVRR R M V K R K 1 1 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 11 1 1390.718 P11142;E9PKE3;E9PN89;A8K7Q2 P11142 237 247 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 4.3573E-06 110.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 2 2 6 2 1.1864 1.1811 28.575 21 Median 1.2188 1.2171 38.572 7 0 Median 1.2179 1.11 29.313 4 1 Median 1.105 1.1756 3.352 2 0 Median 1.2395 1.1365 7.0492 2 0 Median 1.2503 1.3846 21.379 4 1 Median 1.132 1.0047 3.0885 2 0 Median 513650000 233450000 280200000 383780000 172530000 211250000 22305000 11501000 10804000 59946000 26991000 32954000 4275200 1906200 2369000 37679000 17671000 20008000 5670700 2858400 2812300 25013 1950 26335;26336 133012;133013;133014;133015;133016;133017;133018;133019;133020;133021;133022;133023;133024;133025;133026;133027;133028;133029;133030;133031;133032;133033;133034 133672;133673;133674;133675;133676;133677;133678;133679;133680;133681;133682;133683;133684;133685;133686;133687;133688;133689;133690;133691;133692;133693;133694;133695 133678 729 24 MVNLLQIVR ______________________________ ______________________________ - M V V R D 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 0 0 0 0 2 0 0 9 0 1084.6427 O75438 O75438 1 9 NDUFB1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 yes yes 2 0.0059661 56.011 By MS/MS By MS/MS 2 1 1.152 1.122 23.101 3 Median 1.1207 1.0927 3.75 2 0 Median 2.0103 1.626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10047000 4361700 5685400 8550800 3873400 4677400 1496300 488270 1008000 0 0 0 0 0 0 0 0 0 0 0 0 25014 1672 26337;26338 133035;133036;133037 133696;133697;133698;133699;133700;133701 133701 535 6 MVNPTTVLESPHSLPAK GTGEFLDAWLMLVEKMVNPTTVLESPHSLP NPTTVLESPHSLPAKLPGGVQNFPQFSALR K M V A K L 1 0 1 0 0 0 1 0 1 0 2 1 1 0 3 2 2 0 0 2 0 0 17 0 1819.9502 Q7Z6Z7 Q7Z6Z7 1209 1225 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 6.5333E-08 93.754 By MS/MS By MS/MS By MS/MS 1 2 1 0.56417 0.58729 46.862 4 Median 0.57463 0.57728 NaN 1 0 Median 0.51804 0.51805 80.155 2 0 Median 0.55391 0.59748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95766000 60174000 35592000 69949000 45715000 24234000 21550000 11484000 10066000 4267500 2974700 1292800 0 0 0 0 0 0 0 0 0 25015 3253 26339 133038;133039;133040;133041 133702;133703;133704;133705;133706;133707 133703 6 MVNSNLASVEELKEIDVEVR EVRSKSDPIMLLKDRMVNSNLASVEELKEI LASVEELKEIDVEVRKEIEDAAQFATADPE R M V V R K 1 1 2 1 0 0 4 0 0 1 2 1 1 0 0 2 0 0 0 4 0 0 20 1 2273.1573 P08559;Q5JPU3 P08559 324 343 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes no 3 5.9292E-19 141.86 By MS/MS 2 1.2407 1.1715 24.167 2 Median NaN NaN NaN 0 0 Median 1.2407 1.1715 24.167 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84825000 40488000 44337000 0 0 0 84825000 40488000 44337000 0 0 0 0 0 0 0 0 0 0 0 0 25016 1902 26340;26341 133042;133043 133708;133709;133710 133709 672 3 MVNYIQMK LQPEAQRALQQLKQKMVNYIQMKLDLERET LQQLKQKMVNYIQMKLDLERETIELVHTEP K M V M K L 0 0 1 0 0 1 0 0 0 1 0 1 2 0 0 0 0 0 1 1 0 0 8 0 1025.5038 Q6IBS0;D6RG15;H0Y858 Q6IBS0 197 204 TWF2 Twinfilin-2 yes no 2 0.053191 55.441 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25017 3138 26342 133044 133711 133711 1 MVPAGMGAGLER RMGPAIERMGLSMERMVPAGMGAGLERMGP MERMVPAGMGAGLERMGPVMDRMATGLERM R M V E R M 2 1 0 0 0 0 1 3 0 0 1 0 2 0 1 0 0 0 0 1 0 0 12 0 1187.5791 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 532 543 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 5.2548E-06 125.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 2 4 1 12 10 0.92527 0.82517 31.6 30 Median 1.0797 1.0812 10.833 4 1 Median 0.77918 0.67381 25.329 2 0 Median 0.70059 0.7106 9.738 4 0 Median 0.9919 0.82023 NaN 1 0 Median 0.76266 0.76597 19.459 10 2 Median 1.1373 0.97353 49.342 9 1 Median 506830000 275240000 231580000 18544000 9283400 9260600 9213000 4889100 4323900 123890000 71379000 52508000 1435700 661920 773790 304500000 167320000 137180000 49249000 21709000 27540000 25018 116;1423 26343;26344 133045;133046;133047;133048;133049;133050;133051;133052;133053;133054;133055;133056;133057;133058;133059;133060;133061;133062;133063;133064;133065;133066;133067;133068;133069;133070;133071;133072;133073;133074;133075;133076;133077;133078;133079 133712;133713;133714;133715;133716;133717;133718;133719;133720;133721;133722;133723;133724;133725;133726;133727;133728;133729;133730;133731;133732;133733;133734;133735;133736;133737;133738;133739;133740;133741;133742;133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754;133755;133756;133757;133758;133759;133760;133761;133762;133763;133764;133765;133766;133767;133768;133769;133770;133771;133772;133773;133774;133775;133776;133777;133778;133779 133724 62;63 68 MVPFQVPEILR SGFAYHLFPRSRLEKMVPFQVPEILRTPLE RLEKMVPFQVPEILRTPLENLVLQAKIHMP K M V L R T 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 11 0 1327.7322 H7BXY3;Q7L2E3 H7BXY3 775 785 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.00071474 64.04 By MS/MS By matching 1 1 0.83077 0.76844 26.698 2 Median 0.64386 0.63624 NaN 1 0 Median 1.0719 0.92811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3454700 1932400 1522200 2064000 1218600 845460 1390700 713860 676790 0 0 0 0 0 0 0 0 0 0 0 0 25019 1244 26345 133080;133081 133780 133780 1 MVPPVQVSPLIK ______________________________ ______________________________ - M V I K L 0 0 0 0 0 1 0 0 0 1 1 1 1 0 3 1 0 0 0 3 0 0 12 0 1306.7683 P56385 P56385 1 12 ATP5I ATP synthase subunit e, mitochondrial yes yes 2 0.00015992 101.65 By MS/MS By MS/MS By matching 4 5 2 0.83793 0.7795 17.861 11 Median 0.68873 0.62289 13.432 4 2 Median 0.98889 0.81676 8.455 5 1 Median 0.76712 0.77969 12.487 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146410000 80505000 65902000 86397000 50571000 35827000 55526000 27419000 28107000 4483000 2514500 1968500 0 0 0 0 0 0 0 0 0 25020 2512 26346;26347 133082;133083;133084;133085;133086;133087;133088;133089;133090;133091;133092 133781;133782;133783;133784;133785;133786;133787;133788;133789;133790;133791;133792;133793;133794;133795;133796;133797;133798;133799;133800;133801;133802;133803;133804;133805 133783 1191 25 MVPSEFSTGPVEK SFAQGISMEAMSENKMVPSEFSTGPVEKAA NKMVPSEFSTGPVEKAAKPLPFKDPNFVHS K M V E K A 0 0 0 0 0 0 2 1 0 0 0 1 1 1 2 2 1 0 0 2 0 0 13 0 1406.6752 Q6PI98;K7EKI6;M0R3E2;K7EIY8 Q6PI98 64 76 INO80C INO80 complex subunit C yes no 2 0.00042442 73.781 By MS/MS 1 0.65187 0.61393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65187 0.61393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6021100 3644500 2376600 0 0 0 0 0 0 6021100 3644500 2376600 0 0 0 0 0 0 0 0 0 25021 3173 26348 133093 133806 133806 1 MVPVSVQQSLAAYNQR VNVPISQKFTDLFEKMVPVSVQQSLAAYNQ VPVSVQQSLAAYNQRKADLVNRSIAQMREA K M V Q R K 2 1 1 0 0 3 0 0 0 0 1 0 1 0 1 2 0 0 1 3 0 0 16 0 1789.9145 Q8WUM4 Q8WUM4 358 373 PDCD6IP Programmed cell death 6-interacting protein yes yes 2;3 9.5999E-10 119.45 By MS/MS By matching By MS/MS By matching By MS/MS 4 3 1 1 1 0.94893 0.90449 41.594 10 Median 0.70906 0.68273 32.729 4 1 Median 0.94941 0.8537 19.804 3 0 Median 1.1254 1.2011 NaN 1 0 Median 1.1683 0.97456 NaN 1 0 Median 2.0137 2.1297 NaN 1 1 Median NaN NaN NaN 0 0 Median 49832000 26030000 23802000 38571000 21103000 17468000 2749500 1541600 1208000 5169200 2299600 2869600 212280 81446 130830 3130200 1004900 2125300 0 0 0 25022 3493 26349 133094;133095;133096;133097;133098;133099;133100;133101;133102;133103 133807;133808;133809;133810;133811;133812;133813;133814;133815;133816 133811 10 MVQDGDFVR TVQVSTLLRPPHCPRMVQDGDFVRYHYNGT PPHCPRMVQDGDFVRYHYNGTLLDGTSFDT R M V V R Y 0 1 0 2 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1065.4913 Q96AY3;K7ESG6 Q96AY3 170 178 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10;Peptidyl-prolyl cis-trans isomerase yes no 2 0.0011047 85.212 By MS/MS By MS/MS 2 2 1.2593 1.1432 31.82 4 Median 0.89451 0.84912 9.0072 2 0 Median 1.6755 1.4621 1.7472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29546000 14001000 15545000 21315000 10872000 10443000 8231200 3129000 5102200 0 0 0 0 0 0 0 0 0 0 0 0 25023 3603 26350 133104;133105;133106;133107 133817;133818;133819;133820;133821;133822;133823;133824 133818 8 MVQEAEKYK ITNDKGRLSKEEIERMVQEAEKYKAEDEVQ KEEIERMVQEAEKYKAEDEVQRERVSAKNA R M V Y K A 1 0 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 9 1 1124.5536 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 A0A0G2JIW1 519 527 HSPA1B;HSPA1A;HSPA8 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein no no 2 0.0060594 83.265 By MS/MS By matching 1 1 0.90754 0.85365 23.994 2 Median 1.072 1.0115 NaN 1 0 Median 0.76828 0.72043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7945300 3826700 4118700 5634500 2579000 3055500 2310900 1247700 1063200 0 0 0 0 0 0 0 0 0 0 0 0 25024 278;1950 26351 133108;133109 133825 133825 1 MVQEAEKYKAEDEVQR ITNDKGRLSKEEIERMVQEAEKYKAEDEVQ VQEAEKYKAEDEVQRERVSAKNALESYAFN R M V Q R E 2 1 0 1 0 2 4 0 0 0 0 2 1 0 0 0 0 0 1 2 0 0 16 2 1951.9309 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 519 534 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3;4 7.4566E-31 156.08 By MS/MS By MS/MS By MS/MS By MS/MS 6 1 7 2 1.2418 1.3444 34.639 16 Median 1.3026 1.4102 7.2454 6 1 Median 0.88975 0.77144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0598 1.2123 46.811 7 0 Median 1.2069 1.1798 6.0816 2 0 Median 312430000 130540000 181890000 263480000 108730000 154750000 804650 387400 417250 0 0 0 0 0 0 38394000 17312000 21082000 9755800 4119700 5636100 25025 278 26352;26353 133110;133111;133112;133113;133114;133115;133116;133117;133118;133119;133120;133121;133122;133123;133124;133125 133826;133827;133828;133829;133830;133831;133832;133833;133834;133835;133836;133837;133838;133839;133840;133841;133842;133843;133844 133833 137 19 MVQFEENGR RWSSLACNIALDAVKMVQFEENGRKEIDIK ALDAVKMVQFEENGRKEIDIKKYARVEKIP K M V G R K 0 1 1 0 0 1 2 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 9 0 1108.4971 P49368;B4DUR8;E9PRC8;Q5SZX6;Q5SZW8;E9PQ35 P49368 182 190 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00050786 119.27 By matching By MS/MS 1 2 1.2337 1.0671 30.954 3 Median 1.7699 1.7497 NaN 1 0 Median 1.1834 1.0277 5.3285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16204000 7277300 8926900 3376100 1406500 1969500 12828000 5870800 6957300 0 0 0 0 0 0 0 0 0 0 0 0 25026 2379 26354 133126;133127;133128 133845;133846 133845 2 MVQFEENGRK RWSSLACNIALDAVKMVQFEENGRKEIDIK LDAVKMVQFEENGRKEIDIKKYARVEKIPG K M V R K E 0 1 1 0 0 1 2 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 10 1 1236.5921 P49368;B4DUR8;E9PRC8;Q5SZX6;Q5SZW8;E9PQ35 P49368 182 191 CCT3 T-complex protein 1 subunit gamma yes no 2;3 0.00010003 103.56 By MS/MS By MS/MS By matching 2 3 1 1.4531 1.4466 20.924 6 Median 1.4531 1.4646 2.6007 2 0 Median 1.3633 1.2422 11.907 3 0 Median 1.9092 2.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31949000 13464000 18485000 10335000 4354900 5980000 20906000 8807400 12098000 708900 301730 407170 0 0 0 0 0 0 0 0 0 25027 2379 26355 133129;133130;133131;133132;133133;133134 133847;133848;133849;133850;133851;133852;133853 133853 7 MVQLRPR ______________________________ ______________________________ - M V P R A 0 2 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 7 1 898.51709 Q9UMY1 Q9UMY1 1 7 NOL7 Nucleolar protein 7 yes yes 2 0.021178 42.474 By MS/MS By matching 1 1 1.3502 1.3082 4.0389 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2611 1.3461 NaN 1 0 Median 1.4455 1.2714 NaN 1 0 Median 14317000 6518400 7798300 0 0 0 0 0 0 0 0 0 0 0 0 12870000 5845400 7024500 1446800 672990 773780 25028 4338 26356 133135;133136 133854 133854 1 MVQQLQEDVDMEDAP IRAPLAGKGKQLEEKMVQQLQEDVDMEDAP MVQQLQEDVDMEDAP_______________ K M V A P - 1 0 0 3 0 3 2 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 15 0 1746.7441 Q9UHA3 Q9UHA3 149 163 RSL24D1 Probable ribosome biogenesis protein RLP24 yes yes 2 0.017896 42.743 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4629400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4629400 0 0 0 0 0 25029 4272 26357 133137 133855 133855 1914 1 MVQVGVPVMAIR ILTVAKDPRYARYLKMVQVGVPVMAIRNKM YLKMVQVGVPVMAIRNKMISEGLDPDLLEV K M V I R N 1 1 0 0 0 1 0 1 0 1 0 0 2 0 1 0 0 0 0 4 0 0 12 0 1298.7203 F5GWI9;F5GXZ7;F5GZ97;Q9Y3C0 F5GWI9 142 153 CCDC53 WASH complex subunit CCDC53 yes no 2 2.7842E-05 96.711 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.93595 0.88586 26.854 5 Median 0.93595 0.88586 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71949 0.67989 26.114 2 2 Median 1.099 0.89043 NaN 1 0 Median 1.2378 1.1962 NaN 1 0 Median NaN NaN NaN 0 0 Median 12850000 7113900 5736300 7638000 4405200 3232700 0 0 0 4632700 2484600 2148100 76268 29273 46995 503180 194730 308450 0 0 0 25030 999 26358 133138;133139;133140;133141;133142 133856;133857;133858;133859 133856 4 MVSAAFMK KHDNLLHGTKKKKEKMVSAAFMKKYIHVAK TKKKKEKMVSAAFMKKYIHVAKIIKPVLTQ K M V M K K 2 0 0 0 0 0 0 0 0 0 0 1 2 1 0 1 0 0 0 1 0 0 8 0 883.42958 P25205;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 562 569 MCM3 DNA replication licensing factor MCM3 yes no 2 0.026777 41.652 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.93809 0.92047 17.489 4 Median 0.75821 0.73741 NaN 1 0 Median 1.1128 0.97277 NaN 1 0 Median 0.7908 0.87097 NaN 1 0 Median 1.2719 1.1148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24163000 11851000 12312000 6472700 3593900 2878800 11644000 4846900 6797200 5622800 3217100 2405800 423290 192750 230540 0 0 0 0 0 0 25031 2129 26359 133143;133144;133145;133146 133860;133861;133862;133863 133860 4 MVSAEISENR LEDSVLKGMQAASSKMVSAEISENRKRQWP AASSKMVSAEISENRKRQWPTKSQTDRGAS K M V N R K 1 1 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 0 1 0 0 10 0 1134.5339 Q6IQ49 Q6IQ49 182 191 SDE2 Protein SDE2 homolog yes yes 2 0.0027284 59.245 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0342 1.3428 41.809 4 Linear 0.96248 0.9587 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1112 1.1183 NaN 1 0 Median 1.2669 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50417 0.46357 NaN 1 0 Median 7777200 3676400 4100900 1982500 1103600 878950 0 0 0 3100900 1296600 1804300 2153800 934880 1218900 0 0 0 540040 341290 198750 25032 3140 26360 133147;133148;133149;133150;133151 133864;133865;133866;133867 133865 4 MVSAVLNGMLDQSFR LAVLELMQSSVDNTKMVSAVLNGMLDQSFR MVSAVLNGMLDQSFRERANQKHQGLKLATT K M V F R E 1 1 1 1 0 1 0 1 0 0 2 0 2 1 0 2 0 0 0 2 0 0 15 0 1666.8171 P78527 P78527 1592 1606 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 8.3436E-14 174.84 By MS/MS By MS/MS By MS/MS By matching By matching 4 6 3 2 2 0.86176 0.90242 54.301 16 Median 1.036 1.0134 8.0915 4 1 Median 0.78378 0.67943 57.6 5 1 Median 0.89084 0.98878 11.287 3 0 Median 0.41866 0.397 2.4699 2 0 Median NaN NaN NaN 0 0 Median 0.37302 0.31214 17.379 2 0 Median 1026400000 674740000 351670000 27589000 13351000 14238000 654460000 432760000 221710000 5216700 2715100 2501600 78696000 51220000 27475000 0 0 0 260440000 174700000 85748000 25033 2647 26361;26362 133152;133153;133154;133155;133156;133157;133158;133159;133160;133161;133162;133163;133164;133165;133166;133167;133168 133868;133869;133870;133871;133872;133873;133874;133875;133876;133877;133878 133869 1330 11 MVSDEYEQLSSEALEAAR ______________________________ DEYEQLSSEALEAARICANKYMVKSCGKDG - M V A R I 3 1 0 1 0 1 4 0 0 0 2 0 1 0 0 3 0 0 1 1 0 0 18 0 2026.9154 F8W7C6 F8W7C6 1 18 RPL10 yes yes 2 0.0023402 46.592 By MS/MS 1 0.71343 0.6729 NaN 1 Median 0.71343 0.6729 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2779000 1575300 1203700 2779000 1575300 1203700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25034 1084 26363 133169 133879 133879 1 MVSDINNGWQHLEQAEK LRLSNRPAFMPSEGKMVSDINNGWQHLEQA SDINNGWQHLEQAEKGYEEWLLNEIRRLER K M V E K G 1 0 2 1 0 2 2 1 1 1 1 1 1 0 0 1 0 1 0 1 0 0 17 0 1997.9265 O43707 O43707 379 395 ACTN4 Alpha-actinin-4 yes yes 3 8.4412E-06 52.862 By MS/MS By matching 1 1 1.0104 0.90949 16.21 2 Median 1.0567 1.02 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96616 0.81099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17623000 8558100 9065300 16876000 8155800 8720500 0 0 0 0 0 0 746990 402280 344710 0 0 0 0 0 0 25035 1585 26364 133170;133171 133880 133880 1 MVSEEMEEQVHSIR PTRPSCPAVAEIPLRMVSEEMEEQVHSIRG RMVSEEMEEQVHSIRGSSSANPVNSVRRKS R M V I R G 0 1 0 0 0 1 4 0 1 1 0 0 2 0 0 2 0 0 0 2 0 0 14 0 1702.7655 Q99661;Q5JR89 Q99661 164 177 KIF2C Kinesin-like protein KIF2C yes no 3 0.00013799 69.108 By MS/MS By MS/MS 2 1 1.3371 1.2103 9.558 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2301 1.3112 11.832 2 2 Median 1.4454 1.2103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12742000 5375300 7367000 0 0 0 0 0 0 11893000 5001700 6891600 848960 373600 475360 0 0 0 0 0 0 25036 3761 26365 133172;133173;133174 133881;133882;133883 133882 3 MVSGFIPLKPTVK IGSRPASNMAIVDVKMVSGFIPLKPTVKML VKMVSGFIPLKPTVKMLERSNVSRTEVSNN K M V V K M 0 0 0 0 0 0 0 1 0 1 1 2 1 1 2 1 1 0 0 2 0 0 13 1 1415.821 CON__ENSEMBL:ENSBTAP00000024146;P01023;P20742 CON__ENSEMBL:ENSBTAP00000024146 1389 1401 A2M;PZP Alpha-2-macroglobulin;Pregnancy zone protein yes no 2;3 0.0024911 81.017 By MS/MS 3 0.076869 0.079466 37.367 2 Median 0.076869 0.079466 37.367 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16154000 15531000 622670 16154000 15531000 622670 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25037 734 26366 133175;133176;133177 133884;133885;133886 133885 3 MVSGMYLGELVR IDRGSLNPGKQLFEKMVSGMYLGELVRLIL FEKMVSGMYLGELVRLILVKMAKEGLLFEG K M V V R L 0 1 0 0 0 0 1 2 0 0 2 0 2 0 0 1 0 0 1 2 0 0 12 0 1353.6785 P19367 P19367 296 307 HK1 Hexokinase-1 yes yes 2 3.0793E-06 110.14 By MS/MS By MS/MS By MS/MS 3 1 1 1.094 1.0527 15.141 5 Median 1.094 1.0527 20.935 3 2 Median 1.2208 1.055 NaN 1 0 Median 0.9141 0.97804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39110000 18765000 20346000 29038000 14241000 14797000 7709100 3283800 4425300 2363600 1239700 1123900 0 0 0 0 0 0 0 0 0 25038 2064 26367;26368 133178;133179;133180;133181;133182 133887;133888;133889;133890;133891;133892;133893;133894 133893 832 8 MVSIIHR EQSRTRPVAPKEMERMVSIIHRKFSAIQMQ VAPKEMERMVSIIHRKFSAIQMQLKQSTCE R M V H R K 0 1 0 0 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 7 0 854.47964 H0YKH1;A0A087X0P4;H0YLF5;A0A0A0MTI0;P40424;H0YLD4;H0YLT4;H0YLB0;P40425 P40425 211 217 PBX1;PBX2 Pre-B-cell leukemia transcription factor 1;Pre-B-cell leukemia transcription factor 2 no no 2 0.026776 52.683 By MS/MS By matching By matching 3 1 1 0.99007 0.91328 17.776 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80694 0.80708 20.482 3 0 Median 1.0477 0.91328 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2116 1.0386 NaN 1 0 Median 5434700 3048700 2386000 0 0 0 0 0 0 3412600 2066400 1346300 1081000 534500 546520 0 0 0 941070 447840 493230 25039 2286;108 26369 133183;133184;133185;133186;133187 133895;133896;133897 133895 3 MVSSYVGENAEFER NFGLGLLLRSKQIKRMVSSYVGENAEFERQ RMVSSYVGENAEFERQYLSGELEVELTPQG R M V E R Q 1 1 1 0 0 0 3 1 0 0 0 0 1 1 0 2 0 0 1 2 0 0 14 0 1616.7141 P55809 P55809 111 124 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 2 7.0014E-07 132.32 By MS/MS By matching By matching By matching 1 1 1 1 1.1577 1.0463 45.06 4 Median 0.82754 0.78892 NaN 1 0 Median 1.6195 1.3877 NaN 1 0 Median 0.70344 0.73753 NaN 1 0 Median 2.1628 1.8763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16683000 8339500 8343900 12581000 6243400 6337300 575390 247760 327630 2868500 1668500 1200000 658860 179830 479020 0 0 0 0 0 0 25040 2503 26370 133188;133189;133190;133191 133898;133899;133900 133899 3 MVSTPIGGLSYVQGCTK RLQGVRFLSSREVDRMVSTPIGGLSYVQGC STPIGGLSYVQGCTKKHLNSKTVGQCLETT R M V T K K 0 0 0 0 1 1 0 3 0 1 1 1 1 0 1 2 2 0 1 2 0 0 17 0 1796.8801 Q96CM8;E9PF16;D6RF87 Q96CM8 50 66 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial yes no 3 0.057248 9.4055 By MS/MS 1 1.113 0.9761 NaN 1 Median 1.113 0.9761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42532000 10017000 32515000 42532000 10017000 32515000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25041 916 26371 133192 133901 133901 1 MVSVLPIFR DTNNHQIKVMDLETKMVSVLPIFRSENAVV MDLETKMVSVLPIFRSENAVVDGPFLVEKQ K M V F R S 0 1 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 2 0 0 9 0 1060.6103 Q8NBF2 Q8NBF2 565 573 NHLRC2 NHL repeat-containing protein 2 yes yes 2 0.0073909 68.422 By MS/MS 2 0.87476 0.8821 1.5724 2 Median 0.87476 0.8821 1.5724 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7204700 4010800 3194000 7204700 4010800 3194000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25042 3402 26372 133193;133194 133902;133903 133902 2 MVTETEETQEK SCAELGESKEHMESRMVTETEETQEKKAES MESRMVTETEETQEKKAESKEPIEEEPTGA R M V E K K 0 0 0 0 0 1 4 0 0 0 0 1 1 0 0 0 3 0 0 1 0 0 11 0 1323.5864 Q6IQ49 Q6IQ49 312 322 SDE2 Protein SDE2 homolog yes yes 2 0.001697 57.598 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.3395 1.1489 17.389 5 Median 0.94689 0.92374 5.8648 2 0 Median 1.5497 1.3117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3395 1.2834 NaN 1 0 Median 1.3481 1.1489 NaN 1 0 Median 3880700 1768000 2112700 1059000 490540 568500 295110 93496 201620 0 0 0 0 0 0 2032600 1002300 1030400 493850 181660 312190 25043 3140 26373 133195;133196;133197;133198;133199 133904;133905;133906 133906 3 MVTGDNINTAR PDAIAKCKQAGITVRMVTGDNINTARAIAT ITVRMVTGDNINTARAIATKCGILTPGDDF R M V A R A 1 1 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 0 11 0 1190.5714 P20020;E7ERY9;A0A2R8Y4R4;A0A2U3U055;A0A2U3TZI3;Q01814;P23634 P23634 694 704 ATP2B1;ATP2B2;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 4 no no 2 0.00015742 90.108 By MS/MS By MS/MS 1 3 1.2514 1.1408 23.437 4 Median 0.89582 0.90264 NaN 1 0 Median 1.3662 1.1461 19.368 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9928600 4062800 5865700 1602700 751700 850990 8325900 3311100 5014700 0 0 0 0 0 0 0 0 0 0 0 0 25044 2119;2071 26374 133200;133201;133202;133203 133907;133908;133909 133908 3 MVTKNDVMNLLESAGFSR RVIGAKKDQYFLDKKMVTKNDVMNLLESAG KNDVMNLLESAGFSRSNPYYIVKQGKINQM K M V S R S 1 1 2 1 0 0 1 1 0 0 2 1 2 1 0 2 1 0 0 2 0 0 18 1 2010.9867 Q9UQE7 Q9UQE7 115 132 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.009139 23.562 By MS/MS 1 0.9166 1.0479 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9166 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1030400 580910 449510 0 0 0 0 0 0 1030400 580910 449510 0 0 0 0 0 0 0 0 0 25045 4362 26375 133204 133910 133910 1 MVVESAYEVIK MGTDNDSENWKEVHKMVVESAYEVIKLKGY EVHKMVVESAYEVIKLKGYTNWAIGLSVAD K M V I K L 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 1 3 0 0 11 0 1266.653 P07195;A0A3B3IS95 P07195 234 244 LDHB L-lactate dehydrogenase B chain yes no 2 0.00018924 84.213 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 11 8 2 2 2 2 1.2017 1.1009 17.272 26 Median 1.1916 1.0935 13.155 11 0 Median 1.2202 1.0292 14.436 8 1 Median 1.2752 1.2302 11.138 2 0 Median 1.3575 1.1393 13.727 2 0 Median 1.8168 1.8172 NaN 1 0 Median 1.6688 1.3322 15.911 2 0 Median 3175800000 1420200000 1755600000 2239500000 1006300000 1233200000 809340000 360630000 448710000 98453000 42834000 55619000 15523000 6351200 9171500 9648100 2900600 6747400 3386200 1208600 2177600 25046 1880 26376;26377 133205;133206;133207;133208;133209;133210;133211;133212;133213;133214;133215;133216;133217;133218;133219;133220;133221;133222;133223;133224;133225;133226;133227;133228;133229;133230;133231 133911;133912;133913;133914;133915;133916;133917;133918;133919;133920;133921;133922;133923;133924;133925;133926;133927;133928;133929;133930;133931;133932;133933;133934;133935;133936;133937;133938;133939;133940;133941;133942;133943;133944;133945;133946 133911 649 36 MVVLSLPR EECRYKLYQEMFAWKMVVLSLPRIQSQRYQ QEMFAWKMVVLSLPRIQSQRYQVGVHYELT K M V P R I 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 2 0 0 8 0 913.54191 Q14204 Q14204 991 998 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 1.4577E-09 149.4 By MS/MS By MS/MS By matching By matching 3 1 2 1 1.0821 1.0252 6.8161 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95109 0.99859 NaN 1 0 Median 1.2482 1.0722 2.6128 2 0 Median 0.9272 0.93355 NaN 1 0 Median NaN NaN NaN 0 0 Median 24113000 12401000 11712000 0 0 0 0 0 0 20853000 10731000 10122000 1598300 764910 833360 1661900 904630 757270 0 0 0 25047 2865 26378 133232;133233;133234;133235;133236;133237;133238 133947;133948;133949;133950;133951;133952;133953;133954;133955 133949 9 MVVMHPMPR QFILTPHIMTRAKKKMVVMHPMPRVNEISV TRAKKKMVVMHPMPRVNEISVEVDSDPRAA K M V P R V 0 1 0 0 0 0 0 0 1 0 0 0 3 0 2 0 0 0 0 2 0 0 9 0 1096.5344 F8VPD4;P27708;H7C2E4 F8VPD4 2116 2124 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00096605 88.029 By MS/MS By MS/MS 1 1 0.90545 0.83951 45.006 2 Median 1.1376 1.1541 NaN 1 0 Median 0.72067 0.61068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5498600 2935600 2563000 2586900 1253900 1333000 2911700 1681700 1230000 0 0 0 0 0 0 0 0 0 0 0 0 25048 1057 26379 133239;133240 133956;133957 133956 2 MVVNEGSDGGQSVYHVHLHVLGGR GKKCAADLGLNKGYRMVVNEGSDGGQSVYH GQSVYHVHLHVLGGRQMHWPPG________ R M V G R Q 0 1 1 1 0 1 1 5 3 0 2 0 1 0 0 2 0 0 1 5 0 0 24 0 2546.2448 P49773 P49773 96 119 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 3;4;5 3.9735E-18 76.027 By MS/MS By MS/MS 4 5 1.1509 1.0245 15.8 9 Median NaN NaN NaN 0 0 Median 1.2062 1.0225 2.4177 4 0 Median 1.0932 1.1065 21.177 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65233000 29369000 35864000 0 0 0 16056000 6948000 9108200 49177000 22421000 26756000 0 0 0 0 0 0 0 0 0 25049 2399 26380;26381 133241;133242;133243;133244;133245;133246;133247;133248;133249 133958;133959;133960;133961;133962;133963;133964;133965;133966;133967 133961 1108 10 MVVPAALK KVFDGIPPPYDKKKRMVVPAALKVVRLKPT PYDKKKRMVVPAALKVVRLKPTRKFAYLGR R M V L K V 2 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 8 0 827.4939 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 118 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.0079765 69.383 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1 1 1.0768 1.0014 12.554 12 Median 0.9961 0.99933 14.299 3 0 Median 1.0564 0.91317 16.808 4 0 Median 1.0725 1.0051 9.4035 2 0 Median 1.3311 1.102 NaN 1 0 Median 1.0252 1.0512 NaN 1 0 Median 1.2155 1.0004 NaN 1 0 Median 190350000 92174000 98181000 36607000 17811000 18796000 31681000 15949000 15732000 24572000 11923000 12649000 2065300 884240 1181100 69661000 33917000 35744000 25768000 11689000 14079000 25050 2288 26382;26383 133250;133251;133252;133253;133254;133255;133256;133257;133258;133259;133260;133261 133968;133969;133970;133971;133972;133973;133974;133975;133976;133977;133978;133979;133980;133981;133982 133971 1043 15 MVVPGLDGAQIPR LVQALQTKVTQQGLKMVVPGLDGAQIPRDP LKMVVPGLDGAQIPRDPSQQELPRLLSAAC K M V P R D 1 1 0 1 0 1 0 2 0 1 1 0 1 0 2 0 0 0 0 2 0 0 13 0 1351.7282 P49327;A0A0U1RQF0 P49327 1159 1171 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.849E-07 132.01 By MS/MS By MS/MS By matching 5 3 2 0.71916 0.67933 36.671 10 Median 0.68842 0.67062 44.232 5 0 Median 1.0661 0.89169 17.322 3 1 Plateau 0.45463 0.51373 41.34 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162510000 92345000 70166000 103740000 61368000 42374000 46540000 22731000 23809000 12229000 8245900 3982800 0 0 0 0 0 0 0 0 0 25051 2377 26384;26385 133262;133263;133264;133265;133266;133267;133268;133269;133270;133271 133983;133984;133985;133986;133987;133988;133989;133990;133991;133992;133993;133994;133995;133996;133997;133998;133999 133995 1090 17 MVVPVAALFTPLK FSWNVWPSSRLEATRMVVPVAALFTPLKER TRMVVPVAALFTPLKERPDLPPIQYEPVLC R M V L K E 2 0 0 0 0 0 0 0 0 0 2 1 1 1 2 0 1 0 0 3 0 0 13 0 1384.8152 F5H365;Q15436;G3V5X8;G3V4Q2;G3V4V1;G3V1W4;G3V3G5;G3V2R6 F5H365 34 46 SEC23A Protein transport protein Sec23A yes no 2 0.00015584 83 By MS/MS By matching By MS/MS By matching By matching By matching 4 1 1 1 1 1 0.83952 0.8193 14.359 9 Median 0.77642 0.75297 10.354 4 0 Median 0.9372 0.8193 NaN 1 0 Median 0.70455 0.72905 NaN 1 0 Median 1.0365 0.90739 NaN 1 0 Median 0.99938 1.028 NaN 1 0 Median 1.0934 0.95883 NaN 1 0 Median 24067000 13465000 10602000 10851000 6268500 4582500 5314600 2626900 2687700 6959700 4117300 2842500 448390 228330 220060 413980 180440 233530 79271 43445 35826 25052 1029 26386 133272;133273;133274;133275;133276;133277;133278;133279;133280 134000;134001;134002;134003;134004 134002 5 MVVSFNR DQIQEIVTGNPTVIKMVVSFNRGARGQNAL TGNPTVIKMVVSFNRGARGQNALRQILAPV K M V N R G 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 7 0 851.43236 P46940;A0A0J9YXZ5;H0YLE8;E7EWC2;F5H7S7;Q13576 P46940 1054 1060 IQGAP1;IQGAP2 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2 no no 2 0.00018558 149.06 By MS/MS By MS/MS By matching 2 4 1 1.2077 1.0356 9.5782 6 Median 1.1576 1.1093 9.7997 2 0 Median 1.2157 1.0361 11.379 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2005 0.98159 NaN 1 0 Median 42435000 19403000 23032000 26647000 12390000 14257000 14951000 6701700 8249100 0 0 0 0 0 0 0 0 0 837330 311500 525830 25053 2350;901 26387 133281;133282;133283;133284;133285;133286;133287 134005;134006;134007;134008;134009 134006 5 MVVSIAEDLLR GVHQCPLGIPHAKGKMVVSIAEDLLRTAAQ AKGKMVVSIAEDLLRTAAQNSRLSLQRTQA K M V L R T 1 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 0 2 0 0 11 0 1244.6799 Q9P2D3 Q9P2D3 529 539 HEATR5B HEAT repeat-containing protein 5B yes yes 2 0.011042 38.293 By MS/MS 1 1.3888 1.1871 NaN 1 Median NaN NaN NaN 0 0 Median 1.3888 1.1871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5322900 2282200 3040700 0 0 0 5322900 2282200 3040700 0 0 0 0 0 0 0 0 0 0 0 0 25054 4221 26388 133288 134010 134010 1 MVVTGDNVGNVILLNMDGK INIWFCSLDVSASSRMVVTGDNVGNVILLN GDNVGNVILLNMDGKELWNLRMHKKKVTHV R M V G K E 0 0 3 2 0 0 0 3 0 1 2 1 2 0 0 0 1 0 0 4 0 0 19 0 1988.0071 Q92466 Q92466 215 233 DDB2 DNA damage-binding protein 2 yes yes 2;3 1.8746E-07 71.548 By MS/MS By matching 6 1 0.83828 0.86212 8.8017 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81577 0.87208 8.0369 6 3 Median 0.87448 0.73774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34665000 19804000 14861000 0 0 0 0 0 0 34326000 19662000 14664000 339160 141880 197280 0 0 0 0 0 0 25055 3527 26389;26390 133289;133290;133291;133292;133293;133294;133295 134011;134012;134013;134014;134015;134016 134011 1758 6 MVYDMEK VFFQGETFDYIGSSRMVYDMEKGKFPVQLE FDYIGSSRMVYDMEKGKFPVQLENVDSFVE R M V E K G 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 1 1 0 0 7 0 914.38778 Q92542;Q5T205;H0Y3Z4;Q5T209 Q92542 343 349 NCSTN Nicastrin yes no 2 0.027519 51.787 By MS/MS 1 1.5274 1.3071 NaN 1 Median NaN NaN NaN 0 0 Median 1.5274 1.3071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4767800 1849900 2918000 0 0 0 4767800 1849900 2918000 0 0 0 0 0 0 0 0 0 0 0 0 25056 3535 26391 133296 134017;134018 134017 2 MVYIYHSLK TVLPDQDQSDEAQEKMVYIYHSLKNSRETH DEAQEKMVYIYHSLKNSRETHMMGNEEETE K M V L K N 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 2 1 0 0 9 0 1152.6002 Q8IUF8 Q8IUF8 390 398 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.062574 64.265 By MS/MS 1 1.0641 1.0537 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0641 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3336200 1496900 1839300 0 0 0 0 0 0 3336200 1496900 1839300 0 0 0 0 0 0 0 0 0 25057 3313 26392 133297 134019 134019 0 MVYYLDPSSQK KRNSDSLPHRLSAAKMVYYLDPSSQKRAIE SAAKMVYYLDPSSQKRAIELATTLDESLTN K M V Q K R 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 2 0 0 2 1 0 0 11 0 1329.6275 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 770 780 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.00098242 84.213 By MS/MS 1 1.2892 1.2521 NaN 1 Median 1.2892 1.2521 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7276600 3440000 3836600 7276600 3440000 3836600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25058 213 26393 133298 134020 134020 1 MWDLSSNQAIQIAQHDAPVK DGSKVFTASCDKTAKMWDLSSNQAIQIAQH SNQAIQIAQHDAPVKTIHWIKAPNYSCVMT K M W V K T 3 0 1 2 0 3 0 0 1 2 1 1 1 0 1 2 0 1 0 1 0 0 20 0 2251.1056 P78406;E9PQ57;E9PPG9;B0QZ36 P78406 112 131 RAE1 mRNA export factor yes no 3 7.7472E-09 67.449 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0677 0.9929 7.2164 5 Median 1.1329 1.0567 NaN 1 0 Median 1.1518 0.9929 NaN 1 0 Median 0.98902 1.0203 10.966 2 1 Median NaN NaN NaN 0 0 Median 0.9312 0.93196 NaN 1 0 Median NaN NaN NaN 0 0 Median 111050000 55912000 55133000 8206200 3776700 4429500 1854200 945750 908410 90116000 46516000 43600000 0 0 0 10869000 4673200 6195600 0 0 0 25059 2645 26394;26395 133299;133300;133301;133302;133303 134021;134022;134023;134024;134025;134026 134023 1307 6 MWDPHNDPNAQGDAFK EKIERRQQEVETELKMWDPHNDPNAQGDAF WDPHNDPNAQGDAFKTLFVARVNYDTTESK K M W F K T 2 0 2 3 0 1 0 1 1 0 0 1 1 1 2 0 0 1 0 0 0 0 16 0 1841.7791 P08621;M0QYR1 P08621 88 103 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2;3 1.8195E-10 115.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 7 7 5 5 0.7684 0.70832 12.061 27 Median 0.77994 0.74215 13.867 2 0 Median 0.81414 0.70014 NaN 1 0 Median 0.69867 0.67623 6.5785 7 0 Median 0.83986 0.72015 14.871 7 0 Median 0.74682 0.71332 11.654 5 0 Median 0.92253 0.75511 10.908 5 0 Median 347540000 191790000 155750000 18677000 9275800 9400800 3121500 1657000 1464500 212640000 118900000 93738000 20262000 10410000 9851900 84110000 47338000 36772000 8735500 4208200 4527300 25060 1905 26396;26397 133304;133305;133306;133307;133308;133309;133310;133311;133312;133313;133314;133315;133316;133317;133318;133319;133320;133321;133322;133323;133324;133325;133326;133327;133328;133329;133330 134027;134028;134029;134030;134031;134032;134033;134034;134035;134036;134037;134038;134039;134040;134041;134042;134043 134039 676 17 MWEVLESTTQTK ETEAVVKEKLTGLHKMWEVLESTTQTKAQR LHKMWEVLESTTQTKAQRLFDANKAELFTQ K M W T K A 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 3 1 0 1 0 0 12 0 1451.6966 Q01082;A0A087WUZ3 Q01082 1361 1372 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.1566E-11 145.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 1 0.91599 0.89795 48.629 8 Median 0.25285 0.24258 NaN 1 1 Median 1.2202 1.0711 NaN 1 0 Median 0.81648 0.90221 4.4434 2 0 Median 1.0179 0.92223 11.503 3 0 Median NaN NaN NaN 0 0 Median 0.87856 0.75301 NaN 1 0 Median 97792000 59658000 38133000 30307000 23324000 6983000 7714200 3726500 3987700 55568000 30403000 25165000 3009800 1566700 1443100 0 0 0 1192600 637960 554630 25061 2681 26398;26399 133331;133332;133333;133334;133335;133336;133337;133338;133339 134044;134045;134046;134047;134048;134049;134050;134051;134052 134047 1378 9 MWFQWSEQR ARLCLISTFLEDGIRMWFQWSEQRDYIDTT LEDGIRMWFQWSEQRDYIDTTWNCGYLLAS R M W Q R D 0 1 0 0 0 2 1 0 0 0 0 0 1 1 0 1 0 2 0 0 0 0 9 0 1296.571 Q5T8U5;O15260;B7Z1G8 Q5T8U5 44 52 SURF4 Surfeit locus protein 4 yes no 2 0.00089695 91.853 By MS/MS By MS/MS By MS/MS 4 5 3 1.2811 1.1982 17.13 12 Median 1.2811 1.2236 18.824 4 0 Median 1.3803 1.1038 13.916 5 1 Median 1.2653 1.408 14.945 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85595000 37143000 48452000 46499000 20875000 25625000 35168000 14571000 20598000 3927500 1697300 2230200 0 0 0 0 0 0 0 0 0 25062 1534 26400;26401 133340;133341;133342;133343;133344;133345;133346;133347;133348;133349;133350;133351 134053;134054;134055;134056;134057;134058;134059;134060;134061;134062;134063;134064;134065 134055 498 13 MWNDLSEK RPELSESELTRLLARMWNDLSEKKKAKYKA LTRLLARMWNDLSEKKKAKYKAREAALKAQ R M W E K K 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 8 0 1021.4539 P17480;E9PKP7;E9PLT2 P17480 444 451 UBTF Nucleolar transcription factor 1 yes no 2 0.0074119 67.169 By MS/MS By MS/MS 1 1 1.1315 1.0431 14.316 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91617 0.94265 NaN 1 0 Median 1.3975 1.1542 NaN 1 0 Median 8063500 3576700 4486800 0 0 0 0 0 0 0 0 0 0 0 0 6370600 2900500 3470100 1692800 676130 1016700 25063 2040 26402 133352;133353 134066;134067 134066 2 MWQSMCPLR LTDKTLNLCKMIDKRMWQSMCPLRQFRKLP KMIDKRMWQSMCPLRQFRKLPEEVVKKIEK R M W L R Q 0 1 0 0 1 1 0 0 0 0 1 0 2 0 1 1 0 1 0 0 0 0 9 0 1207.53 O75643;A0A494C1A5 O75643 1122 1130 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.006443 54.549 By MS/MS By matching By matching 1 1 1 1.1466 0.96507 10.716 3 Median NaN NaN NaN 0 0 Median 1.1466 0.96507 NaN 1 0 Median 0.74169 0.82414 NaN 1 0 Median 1.167 1.0111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3472600 1652000 1820600 0 0 0 1980900 813890 1167100 1335700 757170 578570 155940 80971 74973 0 0 0 0 0 0 25064 1688 26403 133354;133355;133356 134068 134068 1 MWSIENIAFGSGGGLLQK DINTLQEIVEGMKQKMWSIENIAFGSGGGL IENIAFGSGGGLLQKLTRDLLNCSFKCSYV K M W Q K L 1 0 1 0 0 1 1 4 0 2 2 1 1 1 0 2 0 1 0 0 0 0 18 0 1906.9611 P43490 P43490 372 389 NAMPT Nicotinamide phosphoribosyltransferase yes yes 2 0.0038125 29.299 By MS/MS 1 1.291 1.1054 NaN 1 Median NaN NaN NaN 0 0 Median 1.291 1.1054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2604300 1130600 1473700 0 0 0 2604300 1130600 1473700 0 0 0 0 0 0 0 0 0 0 0 0 25065 2326 26404 133357 134069;134070 134070 2 MYAALGDPK KTPVNKKNIEKMYERMYAALGDPKAPGLGA EKMYERMYAALGDPKAPGLGAFRRKFIQTF R M Y P K A 2 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 9 0 964.4688 P78527 P78527 3613 3621 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0012806 83.265 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 2 1 0.85001 0.87743 23.772 12 Median 0.73119 0.71185 20.08 2 2 Median 1.272 1.1299 5.6069 3 1 Plateau 0.83588 0.89093 22.466 3 0 Plateau 1.1269 1.0737 30.705 2 2 Median 0.82871 0.89508 10.442 2 0 Median NaN NaN NaN 0 0 Median 118860000 58291000 60572000 15651000 7506200 8144800 42030000 18147000 23882000 37135000 20513000 16622000 12916000 5375500 7540600 11131000 6749100 4381700 0 0 0 25066 2647 26405 133358;133359;133360;133361;133362;133363;133364;133365;133366;133367;133368;133369;133370;133371 134071;134072;134073;134074;134075;134076;134077;134078;134079;134080;134081;134082;134083;134084 134077 14 MYAPAWVAPEALQK ISMADVKFSFQCPGRMYAPAWVAPEALQKK RMYAPAWVAPEALQKKPEDTNRRSADMWSF R M Y Q K K 4 0 0 0 0 1 1 0 0 0 1 1 1 0 2 0 0 1 1 1 0 0 14 0 1573.7963 Q13418;A0A0A0MTH3 Q13418 350 363 ILK Integrin-linked protein kinase yes no 2 0.00081363 59.542 By matching By matching By MS/MS By matching 1 1 2 1 0.83397 0.79189 21.427 5 Median 0.93276 0.89654 NaN 1 0 Median 1.079 1.1057 NaN 1 0 Median 0.7188 0.70223 16.993 2 0 Median 0.83397 0.74405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19983000 11263000 8719700 2619900 1292700 1327200 469450 275740 193700 16223000 9400600 6822100 671070 294440 376630 0 0 0 0 0 0 25067 190 26406;26407 133372;133373;133374;133375;133376 134085;134086 134086 83 2 MYEEFLSK SYRRILMGSTLRKRKMYEEFLSKVSILESL STLRKRKMYEEFLSKVSILESLDKWERLTV K M Y S K V 0 0 0 0 0 0 2 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 8 0 1045.479 P10644;K7EM13;K7EPB2;K7EKR1;H7BYW5;C9JSK5;P31321 P10644 245 252 PRKAR1A;PRKAR1B cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit yes no 2 0.058919 32.841 By MS/MS 1 1.3052 1.2275 NaN 1 Median 1.3052 1.2275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6020000 2885500 3134500 6020000 2885500 3134500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25068 1945 26408 133377 134087 134087 1 MYEQEWVR FHAINGMIYNLPGLRMYEQEWVRLHLLNLG YNLPGLRMYEQEWVRLHLLNLGGSRDIHVV R M Y V R L 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 8 0 1139.507 CON__Q28107;A0A0A0MRJ7;P12259 CON__Q28107 1807 1814 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 0.047108 53.166 By MS/MS 1 15.769 15.461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15.769 15.461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19119000 1983500 17135000 0 0 0 0 0 0 19119000 1983500 17135000 0 0 0 0 0 0 0 0 0 + 25069 772 26409 133378 134088 134088 1 MYEVVYQIGTETR IEEKTKTKYTGNPTKMYEVVYQIGTETRSD TKMYEVVYQIGTETRSDFYDIVLVATPLNR K M Y T R S 0 1 0 0 0 1 2 1 0 1 0 0 1 0 0 0 2 0 2 2 0 0 13 0 1587.7603 Q9UHG3 Q9UHG3 292 304 PCYOX1 Prenylcysteine oxidase 1 yes yes 2 2.6176E-05 129.16 By MS/MS By matching By matching 2 1 1 0.922 0.83378 11.022 4 Median 0.96746 0.92195 4.3942 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89718 0.77783 NaN 1 0 Median 0.70044 0.75538 NaN 1 0 Median NaN NaN NaN 0 0 Median 13115000 6932300 6182900 10932000 5586500 5345700 0 0 0 0 0 0 108320 54465 53857 2074700 1291400 783340 0 0 0 25070 4279 26410 133379;133380;133381;133382 134089;134090 134089 2 MYFIISDLSK QERDAYLPLAESASKMYFIISDLSKINNMY ESASKMYFIISDLSKINNMYRFSLAAFLRL K M Y S K I 0 0 0 1 0 0 0 0 0 2 1 1 1 1 0 2 0 0 1 0 0 0 10 0 1215.6209 Q8NCM8 Q8NCM8 3502 3511 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.013431 40.045 By MS/MS By matching 2 1 0.95379 0.87488 84.042 3 Median 1.6723 1.7916 101.37 2 0 Median 0.95379 0.83784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4543000 2170300 2372800 3224800 1436700 1788100 1318300 733630 584660 0 0 0 0 0 0 0 0 0 0 0 0 25071 3418 26411 133383;133384;133385 134091 134091 1 MYGISLCQAILDETK RSEIDMNDIKAFYQKMYGISLCQAILDETK MYGISLCQAILDETKGDYEKILVALCGGN_ K M Y T K G 1 0 0 1 1 1 1 1 0 2 2 1 1 0 0 1 1 0 1 0 0 0 15 0 1740.8426 P04083 P04083 318 332 ANXA1 Annexin A1 yes yes 2 0.0012693 41.283 By MS/MS 2 1.2214 1.0361 22.209 2 Median NaN NaN NaN 0 0 Median 1.2214 1.0361 22.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091400 1073100 2018300 0 0 0 3091400 1073100 2018300 0 0 0 0 0 0 0 0 0 0 0 0 25072 1844 26412 133386;133387 134092 134092 1 MYGISLCQAILDETKGDYEK RSEIDMNDIKAFYQKMYGISLCQAILDETK LCQAILDETKGDYEKILVALCGGN______ K M Y E K I 1 0 0 2 1 1 2 2 0 2 2 2 1 0 0 1 1 0 2 0 0 0 20 1 2333.0919 P04083 P04083 318 337 ANXA1 Annexin A1 yes yes 3 0.0096127 22.221 By MS/MS 2 1.3742 1.2417 2.3396 2 Median NaN NaN NaN 0 0 Median 1.3742 1.2417 2.3396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1827800 710870 1117000 0 0 0 1827800 710870 1117000 0 0 0 0 0 0 0 0 0 0 0 0 25073 1844 26413 133388;133389 134093 134093 1 MYIALTGLQHAGR TRILLIFEGTNEILRMYIALTGLQHAGRIL LRMYIALTGLQHAGRILTTRIHELKQAKVS R M Y G R I 2 1 0 0 0 1 0 2 1 1 2 0 1 0 0 0 1 0 1 0 0 0 13 0 1429.75 Q9H845;H0Y8Z9 Q9H845 434 446 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2;3 1.0669E-05 127.4 By MS/MS By MS/MS By matching 2 2 1 1.0391 1.0138 26.895 5 Median 1.0276 0.99317 0.40513 2 0 Median 1.8154 1.5724 20.797 2 0 Median 0.97587 1.0138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23141000 10881000 12260000 12595000 6310900 6283700 6599800 2406100 4193700 3946900 2164200 1782700 0 0 0 0 0 0 0 0 0 25074 3988 26414 133390;133391;133392;133393;133394 134094;134095;134096;134097 134094 4 MYISELK MKSMENEDKEETVAKMYISELKNIRLRLEE DKEETVAKMYISELKNIRLRLEEYEQRVVK K M Y L K N 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 7 0 882.45209 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1043 1049 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.040736 44.721 By MS/MS 1 1.4228 1.24 NaN 1 Median NaN NaN NaN 0 0 Median 1.4228 1.24 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3391300 1473500 1917800 0 0 0 3391300 1473500 1917800 0 0 0 0 0 0 0 0 0 0 0 0 25075 1220 26415 133395 134098 134098 1 MYLFYGNK LQIGVKSEFRQNLGRMYLFYGNKTSVQFQN FRQNLGRMYLFYGNKTSVQFQNFSPTVVHP R M Y N K T 0 0 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 2 0 0 0 8 0 1034.4895 O95782 O95782 776 783 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.044676 35.88 By MS/MS By matching By matching 1 1 1 1.0027 0.91797 15.476 3 Median 1.1896 1.1818 NaN 1 0 Median 1.0027 0.89209 NaN 1 0 Median 0.84665 0.91797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6348900 3217000 3132000 2297400 1078900 1218600 1424000 743180 680860 2627500 1394900 1232500 0 0 0 0 0 0 0 0 0 25076 1793 26416 133396;133397;133398 134099 134099 1 MYLQAAIVR QEMEQTRSAVDEDRKMYLQAAIVRIMKARK VDEDRKMYLQAAIVRIMKARKVLRHNALIQ K M Y V R I 2 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1063.5848 A0A0A0MTN0;Q13617 A0A0A0MTN0 691 699 CUL2 Cullin-2 yes no 2 0.00064478 107.43 By MS/MS By matching By matching 4 1 1 2.8115 2.7512 129.55 6 Median 2.8053 2.7512 145.46 4 0 Median 8.3164 7.8371 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.273 1.0751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61697000 8963500 52734000 59104000 8573700 50531000 2240800 245740 1995100 0 0 0 351910 144050 207860 0 0 0 0 0 0 25077 196 26417 133399;133400;133401;133402;133403;133404 134100;134101 134101 2 MYNLVSR FQNLLDADKNEDLGRMYNLVSRIQDGLGEL DKNEDLGRMYNLVSRIQDGLGELKKLLETH R M Y S R I 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 7 0 881.44292 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 298 304 CUL1 Cullin-1 yes no 2 0.031276 49.358 By MS/MS By MS/MS 1 1 1.1997 1.0434 23.922 2 Median NaN NaN NaN 0 0 Median 1.4073 1.2356 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0227 0.88098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2787000 1252000 1535000 0 0 0 1524500 638560 885980 0 0 0 1262400 613450 648970 0 0 0 0 0 0 25078 256 26418 133405;133406 134102;134103 134102 2 MYPIDFEK LKATLPSPDKLPGFKMYPIDFEKDDDSNFH DKLPGFKMYPIDFEKDDDSNFHMDFIVAAS K M Y E K D 0 0 0 1 0 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 8 0 1041.4841 P22314;Q5JRR6 P22314 844 851 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.014044 51.854 By MS/MS By matching 1 1 1.0622 0.97118 10.426 2 Median 0.92672 0.90216 NaN 1 0 Median 1.2175 1.0455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10224000 5027500 5196200 5962000 3131900 2830100 4261700 1895600 2366100 0 0 0 0 0 0 0 0 0 0 0 0 25079 2100 26419 133407;133408 134104 134104 1 MYQTQVSDAGLYR GVVLEKVQEDEFRYRMYQTQVSDAGLYRCM YRMYQTQVSDAGLYRCMVTAWSPVRGSLWR R M Y Y R C 1 1 0 1 0 2 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 0 13 0 1530.7137 Q9P2B2 Q9P2B2 642 654 PTGFRN Prostaglandin F2 receptor negative regulator yes yes 2 3.4107E-08 123.63 By MS/MS 2 0.75949 0.73149 3.7618 2 Median 0.75949 0.73149 3.7618 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27629000 15490000 12140000 27629000 15490000 12140000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25080 4219 26420 133409;133410 134105;134106 134106 2 MYSDAFLNDSYLK EIRAICIEEIGIWMKMYSDAFLNDSYLKYV MKMYSDAFLNDSYLKYVGWTMHDKQGEVRL K M Y L K Y 1 0 1 2 0 0 0 0 0 0 2 1 1 1 0 2 0 0 2 0 0 0 13 0 1565.7072 Q8N3U4;B1AMT4 Q8N3U4 318 330 STAG2 Cohesin subunit SA-2 no no 2 0.0006799 67.776 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1.1547 0.99601 15.988 7 Median 1.2003 1.2087 NaN 1 0 Median 1.5274 1.3839 NaN 1 0 Median 0.87683 0.93716 NaN 1 0 Median 1.32 1.1151 NaN 1 0 Median 0.88766 0.92431 7.6868 2 0 Median 1.1547 0.99601 NaN 1 0 Median 20484000 10259000 10225000 1473100 738020 735080 389970 162210 227760 9992300 5133400 4858900 570740 240820 329920 7974400 3940800 4033600 83505 43613 39892 25081 3369 26421 133411;133412;133413;133414;133415;133416;133417 134107;134108;134109;134110;134111 134107 4 MYSDLRK VHPKLNQMDQDKVAKMYSDLRKESMATGSI MDQDKVAKMYSDLRKESMATGSIPITVRHI K M Y R K E 0 1 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 7 1 911.45349 P49736;H0Y8E6 P49736 746 752 MCM2 DNA replication licensing factor MCM2 yes no 2 0.071287 40.103 By MS/MS 1 1.1858 1.113 NaN 1 Median NaN NaN NaN 0 0 Median 1.1858 1.113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4623100 2141500 2481600 0 0 0 4623100 2141500 2481600 0 0 0 0 0 0 0 0 0 0 0 0 25082 2393 26422 133418 134112 134112 1 MYSEIDIK TGELYLDCVMHDLRKMYSEIDIKVADPVVT VMHDLRKMYSEIDIKVADPVVTFCETVVET K M Y I K V 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 1 0 0 1 0 0 0 8 0 997.47903 Q15029 Q15029 647 654 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.010415 67.032 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 1 1.3667 1.1873 13.021 4 Median 1.5378 1.4933 NaN 1 0 Median 1.4438 1.2401 NaN 1 0 Median 1.0479 1.1366 NaN 1 0 Median 1.2937 1.1292 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25142000 10485000 14657000 7403000 3091100 4311900 4224000 1849000 2374900 4598000 1949700 2648300 8917100 3594800 5322300 0 0 0 0 0 0 25083 2917 26423 133419;133420;133421;133422;133423;133424 134113;134114;134115;134116 134113 4 MYSTDDGVQFHAFGR SDCDPDGPLMCHTTKMYSTDDGVQFHAFGR MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL K M Y G R V 1 1 0 2 0 1 0 2 1 0 0 0 1 2 0 1 1 0 1 1 0 0 15 0 1729.7519 Q15029 Q15029 481 495 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 2.5472E-05 83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 7 4 5 2 1.1771 1.0833 14.202 25 Median 1.0435 1.0204 13.679 4 0 Median 1.3636 1.203 4.9149 3 0 Median 1.0725 1.1269 21.108 7 1 Median 1.3216 1.1161 6.2875 4 0 Median 1.0529 1.0589 8.497 5 0 Median 1.0998 0.944 16.863 2 0 Median 135710000 64598000 71111000 35151000 17666000 17485000 5201900 2224600 2977300 57705000 27448000 30257000 9902700 4383600 5519100 27240000 12639000 14601000 509770 237380 272380 25084 2917 26424;26425 133425;133426;133427;133428;133429;133430;133431;133432;133433;133434;133435;133436;133437;133438;133439;133440;133441;133442;133443;133444;133445;133446;133447;133448;133449 134117;134118;134119;134120;134121;134122;134123;134124;134125;134126;134127;134128;134129;134130;134131;134132;134133;134134 134117 1602 17 MYSTIPQASALDLTR DFAPMVPQLCEMLGRMYSTIPQASALDLTR MYSTIPQASALDLTRQLVHIFAHEPAHFPP R M Y T R Q 2 1 0 1 0 1 0 0 0 1 2 0 1 0 1 2 2 0 1 0 0 0 15 0 1665.8396 O94829 O94829 734 748 IPO13 Importin-13 yes yes 2 0.00032045 51.092 By MS/MS 1 1.04 1.0297 NaN 1 Median 1.04 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1955900 1010100 945830 1955900 1010100 945830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25085 1729 26426 133450 134135;134136 134136 2 MYSYPAR SFDLDYDFQRDYYDRMYSYPARVPPPPPIA FQRDYYDRMYSYPARVPPPPPIARAVVPSK R M Y A R V 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 0 7 0 886.40072 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;G3V555;G3V575 B2R5W2 123 129 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 0.0011659 132.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 7 9 1.0261 0.92742 19.637 21 Median NaN NaN NaN 0 0 Median 1.323 1.1348 NaN 1 0 Median 0.86314 0.90912 3.7343 2 0 Median 1.2388 1.077 14.027 2 0 Median 0.95315 0.95491 21.022 7 1 Median 1.0899 0.87997 20.226 9 1 Median 156490000 77738000 78752000 0 0 0 2114700 1039400 1075400 2225800 1210100 1015700 7414000 3165800 4248200 107510000 54822000 52690000 37223000 17500000 19723000 25086 582 26427;26428 133451;133452;133453;133454;133455;133456;133457;133458;133459;133460;133461;133462;133463;133464;133465;133466;133467;133468;133469;133470;133471 134137;134138;134139;134140;134141;134142;134143;134144;134145;134146;134147;134148;134149;134150;134151;134152;134153;134154;134155;134156;134157;134158;134159;134160;134161;134162;134163;134164;134165;134166 134146 226 30 MYTDIQEPMFSAAR SNLESIPGGYNALRRMYTDIQEPMFSAARE RMYTDIQEPMFSAAREQFGNNPFSSLAGNS R M Y A R E 2 1 0 1 0 1 1 0 0 1 0 0 2 1 1 1 1 0 1 0 0 0 14 0 1658.7433 Q9NRR5 Q9NRR5 285 298 UBQLN4 Ubiquilin-4 yes yes 2 3.2479E-07 115.18 By MS/MS By matching By MS/MS 1 1 1 0.8291 0.85437 5.748 3 Median 0.81671 0.78996 NaN 1 0 Median 0.98433 0.85437 NaN 1 0 Median 0.8291 0.8836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9661400 5092700 4568700 5860000 3061600 2798400 984250 431500 552750 2817200 1599600 1217500 0 0 0 0 0 0 0 0 0 25087 4087 26429 133472;133473;133474 134167;134168;134169 134168 3 MYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSR SNLESIPGGYNALRRMYTDIQEPMLSAAQE LVSNTSSGEGSQPSRTENRDPLPNPWAPQT R M Y S R T 3 1 2 1 0 4 3 4 0 1 2 0 2 2 3 7 2 0 1 1 0 0 39 0 4117.8633 Q9UMX0;H0YDS0 Q9UMX0 275 313 UBQLN1 Ubiquilin-1 yes no 3 0.058302 7.2162 By MS/MS 1 0.74973 0.76071 NaN 1 Median 0.74973 0.76071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1173300 634400 538900 1173300 634400 538900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25088 4335 26430 133475 134170 134170 1 MYVFGGWVPLVMDDVK PLPRSLHSATTIGNKMYVFGGWVPLVMDDV YVFGGWVPLVMDDVKVATHEKEWKCTNTLA K M Y V K V 0 0 0 2 0 0 0 2 0 0 1 1 2 1 1 0 0 1 1 4 0 0 16 0 1854.9048 A6NEM2;P51610 A6NEM2 267 282 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.039841 23.376 By matching By matching By MS/MS 1 1 2 0.89491 0.91796 19.327 4 Median 1.0324 1.0078 NaN 1 0 Median 1.3216 1.201 NaN 1 0 Median 0.75871 0.809 4.6659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2484400 1350700 1133700 130360 52039 78320 124490 64301 60192 2229500 1234300 995210 0 0 0 0 0 0 0 0 0 25089 509;2438 26431 133476;133477;133478;133479 134171 134171 1 MYVQTVLDVHKK AAIEKCGEAALNDPKMYVQTVLDVHKKYNA DPKMYVQTVLDVHKKYNALVMSAFNNDAGF K M Y K K Y 0 0 0 1 0 1 0 0 1 0 1 2 1 0 0 0 1 0 1 3 0 0 12 1 1459.7857 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4;A0A590UJA0 A0A0C4DGX4 341 352 CUL1 Cullin-1 yes no 3 0.00035116 52.555 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.1721 1.2803 68.457 6 Median 1.0366 1.0689 NaN 1 0 Median 3.2416 3.135 NaN 1 0 Median 1.1721 1.3382 0.018708 2 0 Median 1.2541 1.2251 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40846 0.36991 NaN 1 0 Median 26424000 11667000 14757000 4516300 2049600 2466700 1912600 598760 1313900 14861000 6574600 8286400 4371100 1937700 2433300 0 0 0 762670 506080 256590 25090 256 26432 133480;133481;133482;133483;133484;133485 134172;134173;134174;134175;134176;134177 134175 6 MYYFGIAALDR LRYVLEALRKPFGSKMYYFGIAALDRFKNR FGSKMYYFGIAALDRFKNRLKDYPQYCQHL K M Y D R F 2 1 0 1 0 0 0 1 0 1 1 0 1 1 0 0 0 0 2 0 0 0 11 0 1318.638 A5YKK6;H3BR89 A5YKK6 950 960 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.0020665 55.549 By MS/MS By MS/MS By matching 1 1 1 1.0018 1.0044 4.8914 3 Median 1.0018 1.0044 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92221 1.0274 NaN 1 0 Median 1.0795 0.93546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2977400 1739700 1237700 2012500 1296100 716420 0 0 0 839630 388190 451440 125250 55420 69829 0 0 0 0 0 0 25091 503 26433 133486;133487;133488 134178;134179;134180 134178 3 NAAALSQALR ATVVIEHCTSRVYGRNAAALSQALRLEAPE RVYGRNAAALSQALRLEAPELPVKVNPTKP R N A L R L 4 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1013.5618 A0A087WYP2;Q8IZQ5;H0YE28 A0A087WYP2 49 58 C11orf31;SELH Selenoprotein H yes no 2 0.00070231 109.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3428 1.3588 39.925 5 Median 1.2992 1.2641 NaN 1 1 Median 1.4226 1.2391 64.161 2 0 Median 1.3428 1.3588 NaN 1 0 Median 2.7435 2.1534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42728000 17109000 25618000 8044100 4237900 3806200 9524700 2880500 6644300 17125000 7692500 9432600 8033800 2298700 5735100 0 0 0 0 0 0 25092 85 26434 133489;133490;133491;133492;133493 134181;134182;134183;134184;134185;134186 134186 6 NAADPISGDFKEISSVK TTNVHSSEHAGRNGRNAADPISGDFKEISS ADPISGDFKEISSVKLVSRYGELKSVPTTQ R N A V K L 2 0 1 2 0 0 1 1 0 2 0 2 0 1 1 3 0 0 0 1 0 0 17 1 1776.8894 P46013 P46013 194 210 MKI67 Antigen KI-67 yes yes 3 8.1981E-06 58.09 By MS/MS 1 0.76642 0.86768 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76642 0.86768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22111000 12844000 9266500 0 0 0 0 0 0 22111000 12844000 9266500 0 0 0 0 0 0 0 0 0 25093 2335 26435 133494 134187;134188 134187 2 NAAEELKPR HEFYNPQKKNYIFLRNAAEELKPRNKK___ NYIFLRNAAEELKPRNKK____________ R N A P R N 2 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 9 1 1026.5458 P78406 P78406 357 365 RAE1 mRNA export factor yes yes 2 0.034648 51.854 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0471 1.0379 21.07 4 Median 0.97837 1.0423 NaN 1 0 Median 1.6618 1.5496 NaN 1 0 Median 0.91056 1.0336 NaN 1 0 Median 1.1208 0.98441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5496300 2599200 2897000 196100 88140 107960 1017800 385350 632500 3212900 1607100 1605900 1069400 518660 550710 0 0 0 0 0 0 25094 2645 26436 133495;133496;133497;133498 134189;134190 134189 2 NAAENMLEILGFK HTAEGTGTNKKVAKRNAAENMLEILGFKVP KRNAAENMLEILGFKVPQAQPTKPALKSEE R N A F K V 2 0 2 0 0 0 2 1 0 1 2 1 1 1 0 0 0 0 0 0 0 0 13 0 1448.7334 O95793;A0A087X1A5;Q5JW30 O95793 343 355 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 0.0015815 51.445 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 3 1 1.1828 1.1317 18.8 12 Median 0.95154 0.92149 16.578 2 0 Median 1.1497 0.98505 10.601 2 0 Median 1.193 1.275 3.614 3 0 Median 1.0533 0.92574 NaN 1 0 Median 1.3273 1.3475 5.3962 3 0 Median 1.0136 0.83395 NaN 1 0 Median 12512000 5427200 7084400 3274400 1488300 1786100 3429900 1570800 1859200 3308800 1361800 1947000 99601 48501 51100 2352800 933640 1419200 46075 24166 21909 25095 1794 26437 133499;133500;133501;133502;133503;133504;133505;133506;133507;133508;133509;133510 134191;134192;134193;134194;134195 134195 5 NAAFGQSGGAGSDSNSPGNVQPNSAPSVESHPVLEK PQQPPQTRWVAPRNRNAAFGQSGGAGSDSN PNSAPSVESHPVLEKLKAAHSYNPKEFEWN R N A E K L 4 0 4 1 0 2 2 5 1 0 1 1 0 1 4 7 0 0 0 3 0 0 36 0 3492.6142 Q9BYJ9 Q9BYJ9 335 370 YTHDF1 YTH domain-containing family protein 1 yes yes 3 0.0020345 24.486 By MS/MS 1 0.29272 0.27691 NaN 1 Median 0.29272 0.27691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8694400 6014400 2679900 8694400 6014400 2679900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25096 3892 26438 133511 134196 134196 1 NAAGALDLLK VVRFAKKMDKMVQKKNAAGALDLLKELKNI MVQKKNAAGALDLLKELKNIPMTLELLQST K N A L K E 3 0 1 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 984.5604 A0A1W2PPZ5;P23193;E5RIS7;E5RJ93;E5RK46;A0A1W2PS15;E5RFI1;A0A1W2PPV7;B7Z4S1 A0A1W2PPZ5 20 29 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.001604 64.04 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 3 1 0.96095 0.86411 25.985 7 Median 0.92736 0.86411 NaN 1 1 Median 1.0131 0.85221 NaN 1 0 Median 0.96095 0.92627 NaN 1 0 Median 1.1747 0.99321 13.487 3 0 Median 0.37251 0.47312 NaN 1 0 Median NaN NaN NaN 0 0 Median 45458000 22554000 22904000 8717200 4633700 4083500 3064900 1444600 1620300 29466000 14317000 15150000 3280100 1577000 1703100 929350 581830 347520 0 0 0 25097 341 26439 133512;133513;133514;133515;133516;133517;133518 134197;134198;134199;134200;134201 134198 5 NAAHALPTTLGALER SPLQAPRVLIALLARNAAHALPTTLGALER NAAHALPTTLGALERLRHPRERTALWVATD R N A E R L 4 1 1 0 0 0 1 1 1 0 3 0 0 0 1 0 2 0 0 0 0 0 15 0 1533.8263 Q8NBJ5 Q8NBJ5 62 76 COLGALT1 Procollagen galactosyltransferase 1 yes yes 2;3 9.0242E-05 63.037 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 1.0106 0.95405 11.708 11 Median 1.0006 0.95205 17.309 4 0 Median 1.016 0.87789 4.4615 2 0 Median 0.95382 0.99065 5.1547 2 0 Median 1.1389 0.95405 7.1507 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57823000 26990000 30833000 29893000 13862000 16031000 10072000 5014100 5057800 14964000 6766100 8198300 2893500 1347500 1546000 0 0 0 0 0 0 25098 3404 26440 133519;133520;133521;133522;133523;133524;133525;133526;133527;133528;133529 134202;134203;134204;134205;134206;134207;134208;134209;134210;134211;134212 134203 11 NAALFALGQFSENLQPHISSYSR QIVCKGLEDPSQVVRNAALFALGQFSENLQ QFSENLQPHISSYSREVMPLLLAYLKSVPL R N A S R E 3 1 2 0 0 2 1 1 1 1 3 0 0 2 1 4 0 0 1 0 0 0 23 0 2549.2663 Q8TEX9;H0YN14 Q8TEX9 412 434 IPO4 Importin-4 yes no 3 0.022189 21.129 By MS/MS 1 0.9916 0.96663 NaN 1 Median 0.9916 0.96663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3017200 1276000 1741200 3017200 1276000 1741200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25099 3480 26441 133530 134213 134213 1 NAALNTIVTVYNVHGDQVFK KEIAVHIGDRDNAVRNAALNTIVTVYNVHG TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE R N A F K L 2 0 3 1 0 1 0 1 1 1 1 1 0 1 0 0 2 0 1 4 0 0 20 0 2202.1433 Q14008 Q14008 1384 1403 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 7.7043E-09 63.857 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1 1.0118 0.9763 30.864 7 Median 1.0118 0.9763 NaN 1 0 Median 0.97116 0.84787 NaN 1 0 Median 1.1707 1.2889 NaN 1 0 Median 0.91735 0.82126 28.363 2 0 Median 1.3297 1.3983 NaN 1 0 Median 0.70966 0.61098 NaN 1 0 Median 47156000 21747000 25409000 15069000 7531000 7537700 1137800 553990 583770 23667000 10366000 13301000 5799300 2682800 3116600 1369400 538700 830700 114260 75099 39164 25100 2850 26442 133531;133532;133533;133534;133535;133536;133537 134214;134215;134216;134217 134216 4 NAAPILHLSGMDVTIVK NPAACKGKARTLFEKNAAPILHLSGMDVTI APILHLSGMDVTIVKTDYEGQAKKLLELME K N A V K T 2 0 1 1 0 0 0 1 1 2 2 1 1 0 1 1 1 0 0 2 0 0 17 0 1777.976 E9PC15;A0A3B3ITD0;Q53H12;E9PG39;A0A3B3ISZ0;A0A3B3ITX7;A0A3B3IS09 E9PC15 55 71 AGK Acylglycerol kinase, mitochondrial yes no 2 1.3402E-31 148.41 By MS/MS 1 0.95684 0.82184 NaN 1 Median NaN NaN NaN 0 0 Median 0.95684 0.82184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3701900 1907200 1794700 0 0 0 3701900 1907200 1794700 0 0 0 0 0 0 0 0 0 0 0 0 25101 435 26443 133538 134218 134218 1 NAAQELATLLLSLPAPASVQQQSK SCFAVGPIIEKERNKNAAQELATLLLSLPA LLSLPAPASVQQQSKSLLASLHTSRSAYHS K N A S K S 5 0 1 0 0 4 1 0 0 0 5 1 0 0 2 3 1 0 0 1 0 0 24 0 2477.349 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2503 2526 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.061591 6.7232 By MS/MS By matching 2 1 0.7584 0.75283 4.3719 3 Median 0.75062 0.73706 2.9951 2 0 Median 0.88436 0.78754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1369600 778470 591140 979870 571120 408750 389740 207350 182390 0 0 0 0 0 0 0 0 0 0 0 0 25102 3089 26444 133539;133540;133541 134219 134219 1 NAAQFLLSTNDK EIEEKINKIRWLPQKNAAQFLLSTNDKTIK PQKNAAQFLLSTNDKTIKLWKISERDKRPE K N A D K T 2 0 2 1 0 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 0 0 12 0 1320.6674 P63151 P63151 106 117 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes yes 2 0.0090932 76.228 By MS/MS By matching By matching 2 1 1 0.68039 0.63079 48.398 4 Median 0.59337 0.57157 64.592 2 0 Median 0.47211 0.44091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1233 0.92356 NaN 1 0 Median 38134000 17890000 20244000 37333000 17505000 19828000 304640 195710 108930 0 0 0 0 0 0 0 0 0 495970 189130 306840 25103 2619 26445 133542;133543;133544;133545 134220 134220 0 NAAQVLVGIPLETGQK RQHLASIYEKEEDWRNAAQVLVGIPLETGQ AAQVLVGIPLETGQKQYNVDYKLETYLKIA R N A Q K Q 2 0 1 0 0 2 1 2 0 1 2 1 0 0 1 0 1 0 0 2 0 0 16 0 1636.9148 D6RAX7;Q9BT78;D6RFN0 D6RAX7 122 137 COPS4 COP9 signalosome complex subunit 4 yes no 2;3 1.1003E-09 137.89 By MS/MS By matching By MS/MS By matching 3 2 2 1 1.0679 0.9924 20.102 8 Median 0.88001 0.82461 2.8053 3 0 Median 1.1333 0.9924 12.737 2 0 Median 1.1045 1.1755 7.1021 2 0 Median NaN NaN NaN 0 0 Median 1.3727 1.3533 NaN 1 0 Median NaN NaN NaN 0 0 Median 49580000 24285000 25295000 22572000 11612000 10961000 3573200 1742000 1831200 22444000 10349000 12095000 0 0 0 990160 582210 407950 0 0 0 25104 813 26446 133546;133547;133548;133549;133550;133551;133552;133553 134221;134222;134223;134224;134225;134226 134224 5 NAAVELTR NSERFCLGLLSNVNRNAAVELTRRHIGRGV LLSNVNRNAAVELTRRHIGRGVRLYYIGGE R N A T R R 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 872.47158 P84022;H3BVD1;H0YKE2 P84022 280 287 SMAD3 Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog yes no 2 0.011309 57.177 By MS/MS 2 0.79262 0.82822 3.7121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79262 0.82822 3.7121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3517100 1739800 1777300 0 0 0 0 0 0 3517100 1739800 1777300 0 0 0 0 0 0 0 0 0 25105 2664 26447 133554;133555 134227;134228 134227 2 NACDHLSGFNVCNR RGTAYVVYEDIFDAKNACDHLSGFNVCNRY KNACDHLSGFNVCNRYLVVLYYNANRAFQK K N A N R Y 1 1 3 1 2 0 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 14 0 1662.6991 Q9Y3B4 Q9Y3B4 72 85 SF3B6 Splicing factor 3B subunit 6 yes yes 3 0.0002295 58.32 By MS/MS By MS/MS 1 1 1.099 1.0194 5.0871 2 Median NaN NaN NaN 0 0 Median 1.2459 1.0568 NaN 1 0 Median 0.96945 0.9834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11493000 4724500 6768800 0 0 0 5098900 1917500 3181500 6394400 2807000 3587400 0 0 0 0 0 0 0 0 0 25106 4415 26448 133556;133557 134229;134230;134231;134232 134230 4 NACQMLMILGLEGR ARERKGEVVDRGAIRNACQMLMILGLEGRS RNACQMLMILGLEGRSVYEEDFEAPFLEMS R N A G R S 1 1 1 0 1 1 1 2 0 1 3 0 2 0 0 0 0 0 0 0 0 0 14 0 1604.7837 Q13618 Q13618 185 198 CUL3 Cullin-3 yes yes 2 0.01736 45.359 By MS/MS 1 0.66465 0.59629 NaN 1 Median NaN NaN NaN 0 0 Median 0.66465 0.59629 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1038700 654660 384020 0 0 0 1038700 654660 384020 0 0 0 0 0 0 0 0 0 0 0 0 25107 2831 26449 133558 134233 134233 1 NADHSMNYQYR GPPSSYQSSQGGYGRNADHSMNYQYR____ GYGRNADHSMNYQYR_______________ R N A Y R - 1 1 2 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 0 11 0 1397.5782 Q12906;K7ELV3 Q12906 884 894 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 0.00019296 68.735 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 4 2 1.0707 1.0152 6.3416 8 Median NaN NaN NaN 0 0 Median 1.2335 1.0886 NaN 1 0 Median 1.0232 1.0957 NaN 1 0 Median 1.1011 0.94118 NaN 1 0 Median 0.97264 1.0194 3.5418 3 1 Median 1.1368 0.95368 1.2943 2 0 Median 19056000 8172400 10884000 0 0 0 914360 328400 585960 1698200 930540 767690 756250 318780 437470 13900000 5817100 8083200 1787100 777560 1009600 25108 2769 26450 133559;133560;133561;133562;133563;133564;133565;133566;133567 134234;134235;134236;134237;134238;134239;134240;134241;134242 134237 9 NADIFNSDVVIVER GRQPLRSGPTHVSTRNADIFNSDVVIVERG RNADIFNSDVVIVERGKGDGVPERRKFGRM R N A E R G 1 1 2 2 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 3 0 0 14 0 1589.8049 Q13111 Q13111 529 542 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 1.119E-05 152.14 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1851 0.99313 20.529 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2535 1.3788 NaN 1 0 Median 1.2203 1.0424 NaN 1 0 Median 0.8347 0.85588 NaN 1 0 Median 1.1509 0.94621 NaN 1 0 Median 15130000 7565700 7564600 0 0 0 0 0 0 4989500 2236600 2752900 843660 371730 471930 8758200 4724200 4034000 538920 233190 305740 25109 2785 26451 133568;133569;133570;133571 134243;134244;134245;134246 134245 4 NADKVLELMNK KGLFEEAAKLYDLAKNADKVLELMNKLLSP DLAKNADKVLELMNKLLSPVVPQISAPQSN K N A N K L 1 0 2 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 1 0 0 11 1 1273.67 Q8N1F7;H3BVG0;H3BVE2 Q8N1F7 634 644 NUP93 Nuclear pore complex protein Nup93 yes no 2;3 0.00064307 98.048 By MS/MS By matching 4 1 1.045 1.1134 15.528 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1924 1.3603 17.929 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2132 1.1062 NaN 1 0 Median 37960000 17692000 20269000 0 0 0 0 0 0 37745000 17608000 20137000 0 0 0 0 0 0 215410 83754 131660 25110 3356 26452 133572;133573;133574;133575;133576 134247;134248;134249;134250 134249 4 NADLNAQTVVK ESSDFNERRERDEKKNADLNAQTVVKVGEN DEKKNADLNAQTVVKVGENVLPPKREIAKR K N A V K V 2 0 2 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1171.6197 E7EPN9;Q9Y520;H7C5N8 E7EPN9 1518 1528 PRRC2C Protein PRRC2C yes no 2 0.018728 35.541 By matching By MS/MS 1 2 0.94111 0.80426 18.678 3 Median 1.1469 1.0775 NaN 1 0 Median 0.93124 0.78243 3.8922 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1774200 828410 945760 393770 193620 200150 1380400 634790 745600 0 0 0 0 0 0 0 0 0 0 0 0 25111 872 26453 133577;133578;133579 134251 134251 1 NADMSEEMQQDSVECATQALEK ______________________________ MQQDSVECATQALEKYNIEKDIAAHIKKEF K N A E K Y 3 0 1 2 1 3 4 0 0 0 1 1 2 0 0 2 1 0 0 1 0 0 22 0 2513.0356 P63167;F8VXL2;F8VRV5;F8VXI7 P63167 10 31 DYNLL1 Dynein light chain 1, cytoplasmic yes no 3 2.4885E-09 55.588 By matching By MS/MS 1 3 0.90551 0.86966 8.0234 4 Median NaN NaN NaN 0 0 Median 1.1475 0.98774 NaN 1 0 Median 0.88762 0.85222 3.9523 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21471000 10830000 10640000 0 0 0 142050 74056 67994 21329000 10756000 10572000 0 0 0 0 0 0 0 0 0 25112 2620 26454;26455 133580;133581;133582;133583 134252;134253;134254;134255 134254 1282;1283 4 NADNDWFR KEEYQSLIRYVENNKNADNDWFRLESNKEG RYVENNKNADNDWFRLESNKEGTRWFGKCW K N A F R L 1 1 2 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 8 0 1036.4363 Q9Y3C8 Q9Y3C8 48 55 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 2 0.024653 43.246 By matching By MS/MS By matching 1 1 1 0.9845 1.0846 16.112 3 Plateau 1.1379 1.1176 NaN 1 0 Median 0.9845 0.82044 NaN 1 0 Median 0.93481 0.88494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9977900 4706900 5271000 6592400 3066500 3525900 872450 429780 442660 2513100 1210700 1302400 0 0 0 0 0 0 0 0 0 25113 4420 26456 133584;133585;133586 134256 134256 1 NADNNSSAFTALSEERDQLLSQVK KEISNLNQLIEEFKKNADNNSSAFTALSEE TALSEERDQLLSQVKELSMVTELRAQVKQL K N A V K E 3 1 3 2 0 2 2 0 0 0 3 1 0 1 0 4 1 0 0 1 0 0 24 1 2636.2678 Q14789;E7EU81;H0Y867 Q14789 731 754 GOLGB1 Golgin subfamily B member 1 yes no 3 5.0216E-05 33.665 By MS/MS 1 1.0138 1.055 NaN 1 Median 1.0138 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13368000 6038800 7329100 13368000 6038800 7329100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25114 2900 26457 133587 134257;134258 134257 2 NADPILISLK GPEAALEAEEWFEGKNADPILISLKHGYIP WFEGKNADPILISLKHGYIPGKNRDLKVVK K N A L K H 1 0 1 1 0 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1082.6336 Q9ULV4;B4E3S0;H0YHL7 Q9ULV4 382 391 CORO1C Coronin-1C;Coronin yes no 2 0.003388 56.916 By matching By matching By MS/MS By matching 2 3 4 4 0.86783 0.85819 21.83 13 Median 0.71041 0.68864 25.618 2 0 Median 0.99861 0.85819 26.956 3 0 Plateau 0.86823 0.93481 6.2009 4 0 Median 1.0217 0.89709 23.904 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119500000 62586000 56917000 9366500 5169300 4197200 2686900 1343100 1343900 95997000 50494000 45502000 11454000 5579800 5873800 0 0 0 0 0 0 25115 4329 26458 133588;133589;133590;133591;133592;133593;133594;133595;133596;133597;133598;133599;133600 134259;134260;134261;134262;134263;134264 134263 6 NADVLFSSFQKPK LHPTYTVDMPSYVPKNADVLFSSFQKPKQK PKNADVLFSSFQKPKQKRHRCRNPNKLDIN K N A P K Q 1 0 1 1 0 1 0 0 0 0 1 2 0 2 1 2 0 0 0 1 0 0 13 1 1479.7722 Q9P2D1 Q9P2D1 2612 2624 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2;3 0.00053924 62.466 By MS/MS By matching 2 3 0.83948 0.83912 10.783 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70574 0.80102 1.4729 2 0 Median 0.882 0.89607 10.781 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12934000 7688700 5245100 0 0 0 0 0 0 12441000 7404400 5036800 492600 284270 208320 0 0 0 0 0 0 25116 4220 26459 133601;133602;133603;133604;133605 134265;134266;134267 134266 3 NAEAVLQSPGLSGK KFKNWDDVLTVDYTRNAEAVLQSPGLSGKV RNAEAVLQSPGLSGKVKRDAEKKDQMKADL R N A G K V 2 0 1 0 0 1 1 2 0 0 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1369.7201 Q13045 Q13045 849 862 FLII Protein flightless-1 homolog yes yes 2 0.00011607 81.865 By MS/MS 1 0.83134 0.72271 NaN 1 Median NaN NaN NaN 0 0 Median 0.83134 0.72271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3045500 1514800 1530700 0 0 0 3045500 1514800 1530700 0 0 0 0 0 0 0 0 0 0 0 0 25117 2781 26460 133606 134268;134269 134268 2 NAEKYAEEDRR SSGGLSKDDIENMVKNAEKYAEEDRRKKER NMVKNAEKYAEEDRRKKERVEAVNMAEGII K N A R R K 2 2 1 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 11 2 1379.643 P38646;H0Y8S0 P38646 564 574 HSPA9 Stress-70 protein, mitochondrial yes no 3 0.047204 18.745 By MS/MS 2 1.2442 1.2556 9.5362 2 Median 1.2442 1.2556 9.5362 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 828990 354190 474800 828990 354190 474800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25118 2277 26461 133607;133608 134270;134271 134270 2 NAENAIEALK LILVANAIVGVWQERNAENAIEALKEYEPE VWQERNAENAIEALKEYEPEMGKVYRQDRK R N A L K E 3 0 2 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1071.556 P16615;H7C5W9;O14983;H3BVB2 P16615 111 120 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00025134 113.66 By MS/MS By MS/MS By matching 2 4 1 1.1701 1.0704 24.167 6 Median 1.1784 1.1389 10.346 2 0 Median 1.1083 0.95493 10.67 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7318 1.7391 NaN 1 0 Median NaN NaN NaN 0 0 Median 21575000 9631200 11944000 8012900 4162100 3850800 6348100 2937700 3410400 0 0 0 0 0 0 7214100 2531400 4682700 0 0 0 25119 2031 26462 133609;133610;133611;133612;133613;133614;133615 134272;134273;134274;134275 134273 4 NAENAIEALKEYEPEMGK LILVANAIVGVWQERNAENAIEALKEYEPE NAIEALKEYEPEMGKVYRQDRKSVQRIKAK R N A G K V 3 0 2 0 0 0 5 1 0 1 1 2 1 0 1 0 0 0 1 0 0 0 18 1 2034.9568 P16615;H7C5W9;O14983;H3BVB2 P16615 111 128 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 3 0.001029 30.956 By MS/MS By matching 3 2 1.1422 1.1132 16.697 5 Median 1.3054 1.4168 18.327 3 0 Plateau 1.1027 1.0613 6.7578 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11302000 5585000 5716600 8575600 4334200 4241400 2726000 1250800 1475200 0 0 0 0 0 0 0 0 0 0 0 0 25120 2031 26463 133616;133617;133618;133619;133620 134276;134277;134278 134276 3 NAEPLINLDVNNPDFK DLVPDNSKTADNATKNAEPLINLDVNNPDF AEPLINLDVNNPDFKAGVMALANLLQIQRH K N A F K A 1 0 4 2 0 0 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 16 0 1811.9054 Q9Y224;H0YJB9;G3V4C6 Q9Y224 116 131 C14orf166 UPF0568 protein C14orf166 yes no 2 7.9007E-05 75.479 By MS/MS By matching By matching By matching 1 1 1 1 0.82937 0.69092 11.061 4 Median 0.63102 0.58778 NaN 1 0 Median 0.90575 0.76369 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86109 0.71 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79881 0.67236 NaN 1 0 Median 13983000 7617400 6365300 8196100 4615200 3580900 3480900 1738200 1742700 0 0 0 548100 286990 261110 0 0 0 1757600 976970 780590 25121 4367 26464 133621;133622;133623;133624 134279;134280 134279 2 NAEQAATQLK TEKTGKLQQEEVQKKNAEQAATQLKVQLQE EVQKKNAEQAATQLKVQLQEAERRWEEVQS K N A L K V 3 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1072.5513 Q86UP2 Q86UP2 478 487 KTN1 Kinectin yes yes 2 0.00068446 110.87 By MS/MS By MS/MS 1 1 1.5272 1.2957 NaN 1 Median NaN NaN NaN 0 0 Median 1.5272 1.2957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7200100 2622100 4578000 0 0 0 7200100 2622100 4578000 0 0 0 0 0 0 0 0 0 0 0 0 25122 3280 26465 133625;133626 134281;134282 134281 2 NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK SKPKPKVEPPKEEQKNAEQNGPVDGQGDNP AEQGTDTAVPSDSDKKLPEMDID_______ K N A D K K 4 0 3 5 0 4 2 5 0 0 0 1 0 0 4 2 2 0 0 2 0 0 34 0 3365.4516 P34932 P34932 799 832 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 0.0039204 22.344 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.5317 0.4854 11.926 4 Median 0.50751 0.49368 NaN 1 1 Median 0.53469 0.47725 NaN 1 0 Median 0.54504 0.59659 NaN 1 0 Median 0.52873 0.45415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19331000 13551000 5780200 6360900 4903700 1457300 1206400 629500 576870 8278300 5500300 2778000 3485600 2517500 968070 0 0 0 0 0 0 25123 2230 26466 133627;133628;133629;133630 134283;134284;134285;134286;134287 134284 5 NAESNAELK RWPKKSAEFLLHMLKNAESNAELKGLDVDS LLHMLKNAESNAELKGLDVDSLVIEHIQVN K N A L K G 2 0 2 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 9 0 974.46689 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96 A0A087WXM6 97 105 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.0091518 49.418 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0179 0.97914 6.7693 4 Median 0.98696 0.9495 NaN 1 0 Median 1.0346 0.88574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0014 1.0288 NaN 1 0 Median 1.2087 1.0097 NaN 1 0 Median 3750800 1702400 2048300 1763100 787960 975140 502270 250270 251990 0 0 0 0 0 0 1159000 523480 635550 326380 140730 185650 25124 67 26467 133631;133632;133633;133634 134288;134289;134290;134291 134291 4 NAETPEATTQQETDTDLPEAPPPPLEPAVIAR QAPDALEQAADTSRRNAETPEATTQQETDT PEAPPPPLEPAVIARPGCVNLSLHGIVEDR R N A A R P 5 1 1 2 0 2 5 0 0 1 2 0 0 0 7 0 5 0 0 1 0 0 32 0 3397.6525 Q8N163;H0YB24;G3V119 Q8N163 481 512 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.0020597 28.673 By MS/MS 1 0.35553 0.382 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35553 0.382 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184100 2796800 387280 0 0 0 0 0 0 3184100 2796800 387280 0 0 0 0 0 0 0 0 0 25125 3354 26468 133635 134292 134292 1 NAEVRPPFTYASLIR PISSADIAQNQEFYKNAEVRPPFTYASLIR NAEVRPPFTYASLIRQAILESPEKQLTLNE K N A I R Q 2 2 1 0 0 0 1 0 0 1 1 0 0 1 2 1 1 0 1 1 0 0 15 1 1732.9261 A0A3B3IT14;A0A3B3IS87;G5E965;H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;C9J0F0;A0A3B3IST6;A0A3B3IUB6;A0A3B3IRS5;A0A3B3IST0;A0A3B3IS20;Q9H334 A0A3B3IT14 361 375 FOXP1 Forkhead box protein P1 yes no 3 0.0037351 28.956 By MS/MS By matching 1 1 0.82117 0.81657 14.673 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65963 0.73609 NaN 1 0 Median 1.0223 0.90584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4420200 2462300 1957900 0 0 0 0 0 0 4352800 2424500 1928300 67406 37865 29541 0 0 0 0 0 0 25126 224 26469 133636;133637 134293;134294 134293 2 NAFDYSEGTDTAVDLTSGR DTNLAEAGHFFYKSKNAFDYSEGTDTAVDL YSEGTDTAVDLTSGRVTTGEVMDYSSKTTG K N A G R V 2 1 1 3 0 0 1 2 0 0 1 0 0 1 0 2 3 0 1 1 0 0 19 0 2017.8865 Q9Y6V0 Q9Y6V0 3011 3029 PCLO Protein piccolo yes yes 3 0.057568 8.5004 By MS/MS By matching 3 2 0.82107 0.83594 12.346 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.788 0.83594 8.3305 3 0 Median 0.94804 0.80766 19.727 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43970000 23323000 20647000 0 0 0 0 0 0 36147000 19786000 16361000 7822600 3537200 4285400 0 0 0 0 0 0 25127 4496 26470 133638;133639;133640;133641;133642 134295 134295 1 NAFMMLIHADQDR IHDFLVNEKDASCKRNAFMMLIHADQDRAL KRNAFMMLIHADQDRALDYLSTCIDQVQTF R N A D R A 2 1 1 2 0 1 0 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 13 0 1560.7177 P53618;E9PP73 P53618 192 204 COPB1 Coatomer subunit beta yes no 2;3 0.00054372 70.977 By MS/MS By matching 2 2 1.0265 0.97681 9.8572 4 Median 1.0265 1.0044 2.4898 2 0 Median 1.0004 0.88972 11.763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7407400 3659500 3747900 6118900 3056800 3062200 1288400 602700 685730 0 0 0 0 0 0 0 0 0 0 0 0 25128 2472 26471 133643;133644;133645;133646 134296;134297;134298;134299 134297 4 NAFVTGIAR SLLYQPNFNTNFEDRNAFVTGIARYIEQAT TNFEDRNAFVTGIARYIEQATVHSSMNEML R N A A R Y 2 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 947.51886 E7EVJ5;H7C229;E7EW33;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JRX2;A0A087WU52;A0A0G2JRV9;A0A087WWL1;A0A087WVE1;A0A087WTQ3;A0A087WWZ1;A0A087WV63;A0A0G2JRF5;A0A087WWY5 Q7L576 50 58 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.00052246 107.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2235 1.211 4.8853 4 Linear 1.1568 1.1183 NaN 1 0 Median 1.4224 1.1902 NaN 1 0 Median 1.1066 1.2167 NaN 1 0 Median 1.294 1.0986 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34212000 15688000 18524000 5938800 2790000 3148800 9964900 4442800 5522100 12849000 6035100 6813400 5459700 2420300 3039500 0 0 0 0 0 0 25129 3224;897 26472 133647;133648;133649;133650 134300;134301;134302;134303 134303 4 NAGDLAPAGGAASASTDEAADAESGTR ETDKHWRHRRDFLLRNAGDLAPAGGAASAS SASTDEAADAESGTRNRQLQQLISFSMAWA R N A T R N 9 1 1 3 0 0 2 4 0 0 1 0 0 0 1 3 2 0 0 0 0 0 27 0 2432.0688 Q9NXV6;J3KNE1;D6RGD2 Q9NXV6 42 68 CDKN2AIP CDKN2A-interacting protein yes no 3 1.2373E-19 64.733 By MS/MS 1 0.80589 0.82948 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80589 0.82948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6793800 4003400 2790500 0 0 0 0 0 0 6793800 4003400 2790500 0 0 0 0 0 0 0 0 0 25130 4169 26473 133651 134304;134305 134305 2 NAGETLLQR SRPMPPEARRLIVNKNAGETLLQRAARLGY RLIVNKNAGETLLQRAARLGYEEVVLYCLE K N A Q R A 1 1 1 0 0 1 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1000.5302 A0A075B6Q3;Q6W2J9;H7C2V9;A6NE70;H7BZ37;H7C231 Q6W2J9 1461 1469 BCORL1;BCOR BCL-6 corepressor no no 2 0.00044777 95.531 By MS/MS 1 0.72008 0.79531 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72008 0.79531 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4348100 2343700 2004400 0 0 0 0 0 0 4348100 2343700 2004400 0 0 0 0 0 0 0 0 0 25131 3191;9 26474 133652 134306 134306 1 NAGFTPQER AHEEIDLRNPKGNKKNAGFTPQERQGFGEL PKGNKKNAGFTPQERQGFGELLQAVPLADS K N A E R Q 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 9 0 1018.4832 G3V3M6;P27695;G3V5Q1 G3V3M6 229 237 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.0028118 69.423 By matching By MS/MS By MS/MS By MS/MS 2 1 1 2 0.9728 0.90477 6.9623 6 Median 0.85349 0.84559 10.093 2 0 Median 1.1152 0.96086 NaN 1 0 Median 0.85627 0.8464 NaN 1 0 Median 1.0732 0.90603 0.72216 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14045000 7318500 6726200 998390 525070 473320 1028900 474350 554590 3725900 2035900 1690000 8291400 4283100 4008300 0 0 0 0 0 0 25132 1112 26475 133653;133654;133655;133656;133657;133658 134307;134308;134309;134310;134311;134312;134313;134314 134308 8 NAGLAFIELVNEGR VMLLCSQEWQNSIQKNAGLAFIELVNEGRL KNAGLAFIELVNEGRLLSQTMKDHLVRVAN K N A G R L 2 1 2 0 0 0 2 2 0 1 2 0 0 1 0 0 0 0 0 1 0 0 14 0 1501.7889 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1869 1882 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.00010508 82.362 By MS/MS By matching By MS/MS 2 1 1 1.1052 1.1578 20.302 4 Median 0.97696 0.96973 0.6405 2 0 Median 1.5858 1.376 NaN 1 0 Median 1.2389 1.3805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9515200 4862100 4653200 8537700 4461700 4076100 433580 186750 246830 543910 213670 330240 0 0 0 0 0 0 0 0 0 25133 470 26476 133659;133660;133661;133662 134315;134316;134317 134316 3 NAGNCLSPAVIVGLLK PKGTIQVITQGTSLKNAGNCLSPAVIVGLL AGNCLSPAVIVGLLKEASKQADVNLVNAKL K N A L K E 2 0 2 0 1 0 0 2 0 1 3 1 0 0 1 1 0 0 0 2 0 0 16 0 1624.8971 A0A286YF22;O43175;A0A2C9F2M7 A0A286YF22 365 380 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.047238 22.474 By MS/MS 1 1.1241 0.9661 NaN 1 Median NaN NaN NaN 0 0 Median 1.1241 0.9661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2024600 976980 1047600 0 0 0 2024600 976980 1047600 0 0 0 0 0 0 0 0 0 0 0 0 25134 351 26477 133663 134318 134318 1 NAGNEQDLGIQYK LVQLKVVEDGILKLRNAGNEQDLGIQYKAL LRNAGNEQDLGIQYKALKPEVDKLNIMAAK R N A Y K A 1 0 2 1 0 2 1 2 0 1 1 1 0 0 0 0 0 0 1 0 0 0 13 0 1448.6896 P35221;G3XAM7;E5RIB1;E5RJ41 P35221 166 178 CTNNA1 Catenin alpha-1 yes no 2 4.3287E-07 111.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1454 1.0499 21.765 4 Median 1.2313 1.206 NaN 1 0 Median 1.5117 1.3293 NaN 1 0 Median 0.77063 0.8431 NaN 1 0 Median 1.0656 0.91411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19360000 9216100 10144000 4350500 2090500 2260000 3109800 1167100 1942700 8664800 4678200 3986600 3235400 1280300 1955000 0 0 0 0 0 0 25135 2232 26478 133664;133665;133666;133667 134319;134320;134321;134322 134319 4 NAGSLLTR AYNNLKGNLQNLERKNAGSLLTRSLAEIVK LQNLERKNAGSLLTRSLAEIVKKDDFVLDS K N A T R S 1 1 1 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 830.46102 P21283;E7EV59 P21283 157 164 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 0.055458 50.04 By MS/MS 1 0.80055 0.68709 NaN 1 Median NaN NaN NaN 0 0 Median 0.80055 0.68709 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1172100 559560 612590 0 0 0 1172100 559560 612590 0 0 0 0 0 0 0 0 0 0 0 0 25136 2087 26479 133668 134323 134323 1 NAGVEGSLIVEK IIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ IAKNAGVEGSLIVEKIMQSSSEVGYDAMAG K N A E K I 1 0 1 0 0 0 2 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1214.6507 P10809 P10809 482 493 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 3.4438E-06 119.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 1 2 2 5 1.3442 1.141 17.872 19 Median 1.1054 1.0119 11.61 4 1 Median 1.2968 1.0945 14.219 5 1 Median 0.97719 0.9385 NaN 1 0 Median 1.4148 1.2025 4.4022 2 0 Median 1.3154 1.3075 19.265 2 0 Median 1.5615 1.2987 12.875 5 0 Median 1406200000 624870000 781290000 906490000 412630000 493860000 298970000 126870000 172100000 98534000 46084000 52450000 53422000 21621000 31801000 25650000 9002800 16647000 23098000 8668500 14430000 25137 1947 26480 133669;133670;133671;133672;133673;133674;133675;133676;133677;133678;133679;133680;133681;133682;133683;133684;133685;133686;133687;133688 134324;134325;134326;134327;134328;134329;134330;134331;134332;134333;134334;134335;134336;134337;134338;134339;134340;134341;134342;134343;134344;134345;134346;134347;134348;134349;134350;134351;134352;134353;134354;134355;134356;134357;134358;134359;134360;134361;134362;134363;134364;134365;134366;134367;134368;134369 134324 46 NAGVILAPLQR YIEKHNLYSSESEDRNAGVILAPLQRNTAE SEDRNAGVILAPLQRNTAEAKT________ R N A Q R N 2 1 1 0 0 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1150.6822 Q9HAN9 Q9HAN9 262 272 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2 0.00016023 81.548 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.205 1.0863 20.089 4 Median 1.0503 1.0155 NaN 1 0 Median 1.4357 1.228 NaN 1 0 Median 0.79973 0.78267 NaN 1 0 Median 1.3825 1.1621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5468900 2633400 2835500 2223000 939840 1283100 634970 283800 351170 2250100 1251900 998120 360910 157860 203050 0 0 0 0 0 0 25138 4010 26481 133689;133690;133691;133692 134370;134371;134372 134371 2 NAGYGGLGLSIEGPSK EGHTFQVAEFIVDTRNAGYGGLGLSIEGPS AGYGGLGLSIEGPSKVDINCEDMEDGTCKV R N A S K V 1 0 1 0 0 0 1 5 0 1 2 1 0 0 1 2 0 0 1 0 0 0 16 0 1518.7678 Q14315 Q14315 2068 2083 FLNC Filamin-C yes yes 2 0.00013347 54.143 By MS/MS By MS/MS 2 1 0.94279 0.83046 60.859 3 Median NaN NaN NaN 0 0 Median 0.93846 0.82547 0.85287 2 0 Median NaN NaN NaN 0 0 Median 2.509 2.3685 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10683000 5032200 5651300 0 0 0 9652600 4704000 4948600 0 0 0 1030900 328230 702670 0 0 0 0 0 0 25139 2871 26482 133693;133694;133695 134373;134374;134375 134373 3 NAHSTAIAGLTFLHR GLWDLEDKKLINQMRNAHSTAIAGLTFLHR NAHSTAIAGLTFLHREPLLVTNGADNALRI R N A H R E 3 1 1 0 0 0 0 1 2 1 2 0 0 1 0 1 2 0 0 0 0 0 15 0 1607.8532 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 274 288 WDR36 WD repeat-containing protein 36 yes no 3 9.5296E-05 64.675 By MS/MS By MS/MS 1 1 0.94748 0.9065 8.7627 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90777 0.96444 NaN 1 0 Median 0.98892 0.85203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10962000 5892600 5069300 0 0 0 0 0 0 9184500 5023600 4160900 1777400 869040 908400 0 0 0 0 0 0 25140 188 26483 133696;133697 134376;134377 134376 2 NAIANASTLAEVER KKKGGPSPGDVEAIKNAIANASTLAEVERL KNAIANASTLAEVERLKGLLQSGQIPGRER K N A E R L 4 1 2 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1457.7474 P09661;H0YMA0;H0YLR3 P09661 206 219 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 3.8403E-32 206.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 5 2 1.4041 1.2954 30.033 13 Linear 1.139 1.0847 NaN 1 0 Median 0.66582 0.5931 21.217 2 0 Median 1.008 0.96696 6.8146 2 0 Median 1.0875 0.90842 NaN 1 0 Median 0.76335 0.83329 38.606 5 1 Median 0.9091 0.71932 21.825 2 0 Median 709670000 346640000 363030000 111300000 49851000 61451000 39097000 21433000 17664000 241640000 116740000 124900000 39916000 18949000 20967000 236940000 120040000 116890000 40782000 19621000 21160000 25141 1920 26484 133698;133699;133700;133701;133702;133703;133704;133705;133706;133707;133708;133709;133710 134378;134379;134380;134381;134382;134383;134384;134385;134386;134387;134388;134389;134390;134391;134392;134393;134394;134395;134396;134397;134398;134399;134400;134401;134402 134378 24 NAIHTFVQSGSHLAAR HIQALLDKYNAEKPKNAIHTFVQSGSHLAA AIHTFVQSGSHLAAREKANL__________ K N A A R E 3 1 1 0 0 1 0 1 2 1 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1707.8805 P04040 P04040 507 522 CAT Catalase yes yes 3;4 1.8236E-10 128.9 By MS/MS By MS/MS By matching 2 2 1 1.1178 1.0518 17.269 5 Median 1.0682 1.0133 5.2694 2 0 Median 1.477 1.2791 13.375 2 0 Median 0.86054 0.89962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66028000 30624000 35404000 46598000 21834000 24764000 16236000 6923600 9312400 3194000 1866000 1328000 0 0 0 0 0 0 0 0 0 25142 1841 26485 133711;133712;133713;133714;133715 134403;134404;134405;134406;134407 134404 5 NAINSPMSPALVDVHPEDTQLEENEER KRRAREVSDLQEEGKNAINSPMSPALVDVH DVHPEDTQLEENEERTMIDPTSKEDPKFKE K N A E R T 2 1 3 2 0 1 5 0 1 1 2 0 1 0 3 2 1 0 0 2 0 0 27 0 3033.3986 Q9HBI1;B0QYP8 Q9HBI1 47 73 PARVB Beta-parvin yes no 3 0.01162 17.158 By MS/MS 1 0.4399 0.4766 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4399 0.4766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3862500 2606900 1255600 0 0 0 0 0 0 3862500 2606900 1255600 0 0 0 0 0 0 0 0 0 25143 4019 26486 133716 134408 134408 1 NAINTEMYHEIMR EDGITKIMFNRPKKKNAINTEMYHEIMRAL KKNAINTEMYHEIMRALKAASKDDSIITVL K N A M R A 1 1 2 0 0 0 2 0 1 2 0 0 2 0 0 0 1 0 1 0 0 0 13 0 1620.7388 A0A0C4DGA2;O75521;F1LLU7 A0A0C4DGA2 132 144 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 2;3 5.701E-07 114.83 By MS/MS By matching By MS/MS By matching 3 2 2 1 1.179 1.1542 15.839 8 Median 0.90844 0.90708 24.238 3 0 Median 1.3333 1.1843 2.5722 2 0 Median 1.0145 1.1021 5.4553 2 1 Median 1.5464 1.3196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45165000 21524000 23640000 30379000 14326000 16054000 849810 343100 506710 13524000 6706200 6818100 411020 149010 262000 0 0 0 0 0 0 25144 237 26487 133717;133718;133719;133720;133721;133722;133723;133724 134409;134410;134411;134412;134413;134414 134411 6 NAIQEIQR TMDEKYVNSIWDLLKNAIQEIQRKNNSGLS SIWDLLKNAIQEIQRKNNSGLSFEELYRNA K N A Q R K 1 1 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8 0 970.51959 Q13618;H7C1L6;A0A087X1R9 Q13618 39 46 CUL3 Cullin-3 yes no 2 0.00072089 102.72 By MS/MS By MS/MS By matching 1 1 1 1.1937 1.0998 20.073 3 Median 1.1171 1.0998 NaN 1 0 Median 1.1937 1.0344 NaN 1 1 Median 1.4012 1.5039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7717200 3432000 4285200 2313100 988990 1324100 3948500 1850500 2098000 1455600 592540 863110 0 0 0 0 0 0 0 0 0 25145 2831 26488 133725;133726;133727 134415;134416;134417;134418 134418 4 NAITDVTR KLGWFDCQKDDYVFRNAITDVTRFLQDSVE KDDYVFRNAITDVTRFLQDSVEYCIIGVTI R N A T R F 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 8 0 888.46649 E7ESC6;Q9UIA9;H0YBE1 E7ESC6 133 140 XPO7 Exportin-7 yes no 2 0.0026731 106.04 By MS/MS By MS/MS 1 1 1.4592 1.2339 NaN 1 Median NaN NaN NaN 0 0 Median 1.4592 1.2339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4487600 1556500 2931000 0 0 0 4487600 1556500 2931000 0 0 0 0 0 0 0 0 0 0 0 0 25146 885 26489 133728;133729 134419;134420;134421 134421 3 NAITSSYSSTR SLTGAYTSGIPSSSRNAITSSYSSTRGISQ SSSRNAITSSYSSTRGISQLWKRNGPSSSP R N A T R G 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 4 2 0 1 0 0 0 11 0 1185.5626 A8CG34;Q96HA1;C9JFL1 A8CG34 388 398 POM121C;POM121 Nuclear envelope pore membrane protein POM 121C;Nuclear envelope pore membrane protein POM 121 yes no 2 0.00019545 75.378 By MS/MS By matching 1 1 0.96627 0.92698 29.519 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0404 1.1421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89741 0.75235 NaN 1 0 Median 3874000 1948400 1925500 0 0 0 0 0 0 2978100 1479300 1498800 0 0 0 0 0 0 895840 469140 426700 25147 536 26490 133730;133731 134422;134423 134422 2 NAKEAGGNYTPALTEQEVYAQVAR KAFLEILHTYQKEQRNAKEAGGNYTPALTE TPALTEQEVYAQVARLFKNQEDLLSEFGQF R N A A R L 5 1 2 0 0 2 3 2 0 0 1 1 0 0 1 0 2 0 2 2 0 0 24 1 2579.2616 Q96ST3 Q96ST3 341 364 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.071114 6.9526 By MS/MS 1 0.8701 1.043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8701 1.043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10576000 5763400 4812900 0 0 0 0 0 0 10576000 5763400 4812900 0 0 0 0 0 0 0 0 0 25148 3737 26491 133732 134424 134424 1 NAKPLSFK TVFDTNIQTSAKKKKNAKPLSFKVGVGKVI TSAKKKKNAKPLSFKVGVGKVIRGWDEALL K N A F K V 1 0 1 0 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 8 1 903.5178 Q00688 Q00688 158 165 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.053509 57.177 By matching By MS/MS 1 1 0.90434 0.86582 4.4678 2 Median NaN NaN NaN 0 0 Median 0.9149 0.83889 NaN 1 0 Median 0.8939 0.89361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590900 2327100 2263800 0 0 0 1029800 488810 540980 3561100 1838300 1722800 0 0 0 0 0 0 0 0 0 25149 2677 26492 133733;133734 134425 134425 1 NALALWLSHLEER LSYALIHPATTLEDRNALALWLSHLEERLA DRNALALWLSHLEERLASGFRSRPEPSYHS R N A E R L 2 1 1 0 0 0 2 0 1 0 4 0 0 0 0 1 0 1 0 0 0 0 13 0 1550.8205 A0A087WZT0;M0QZ22;Q5PRF9;M0QY61;M0R0X3 A0A087WZT0 141 153 SAMD4B Protein Smaug homolog 2 yes no 2 0.00049996 72.006 By MS/MS 1 1.0263 0.88944 NaN 1 Median NaN NaN NaN 0 0 Median 1.0263 0.88944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2807700 1252600 1555100 0 0 0 2807700 1252600 1555100 0 0 0 0 0 0 0 0 0 0 0 0 25150 98 26493 133735 134426;134427 134426 2 NALDPMSVLLAR VTISEGAHHLDLRTKNALDPMSVLLARSLE RTKNALDPMSVLLARSLEVRHMKNWIRDFY K N A A R S 2 1 1 1 0 0 0 0 0 0 3 0 1 0 1 1 0 0 0 1 0 0 12 0 1298.7017 P42785 P42785 463 474 PRCP Lysosomal Pro-X carboxypeptidase yes yes 2 0.010147 55.567 By MS/MS By MS/MS By matching 3 2 2 1.0645 0.96415 67.549 7 Median 1.2765 1.2921 83.702 3 1 Median 1.034 0.8964 10.303 2 0 Median 0.72383 0.74914 57.166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17085000 6479000 10606000 10442000 3501400 6940500 4692700 2008800 2683900 1950500 968760 981750 0 0 0 0 0 0 0 0 0 25151 2318 26494 133736;133737;133738;133739;133740;133741;133742 134428;134429;134430 134428 3 NALESYAFNMK YKAEDEVQRERVSAKNALESYAFNMKSAVE VSAKNALESYAFNMKSAVEDEGLKGKISEA K N A M K S 2 0 2 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 11 0 1286.5965 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;Q53FA3;P34931 A0A0G2JIW1 541 551 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 0.00011219 143.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 4 3 3 5 4 1.3385 1.2181 18.493 26 Median 1.4097 1.2789 10.474 7 2 Median 1.2507 1.0566 3.9638 4 0 Median 1.3808 1.3082 12.562 3 0 Median 1.2808 1.0794 14.171 3 0 Median 1.3641 1.3769 37.712 5 0 Median 1.416 1.1705 7.6022 4 0 Median 2390700000 1006900000 1383800000 828480000 333270000 495220000 739530000 321120000 418410000 589530000 254480000 335050000 99655000 42041000 57614000 125780000 52763000 73013000 7725500 3224400 4501100 25152 278;2229 26495;26496 133743;133744;133745;133746;133747;133748;133749;133750;133751;133752;133753;133754;133755;133756;133757;133758;133759;133760;133761;133762;133763;133764;133765;133766;133767;133768 134431;134432;134433;134434;134435;134436;134437;134438;134439;134440;134441;134442;134443;134444;134445;134446;134447;134448;134449;134450;134451;134452;134453;134454;134455;134456;134457;134458;134459;134460;134461;134462;134463;134464;134465;134466;134467;134468;134469;134470 134443 138 40 NALGPGLSPELGPLPALR LAQGLPQLHSLVLRRNALGPGLSPELGPLP GPGLSPELGPLPALRVLDLSGNALEALPPG R N A L R V 2 1 1 0 0 0 1 3 0 0 5 0 0 0 4 1 0 0 0 0 0 0 18 0 1770.9992 Q8N1G4 Q8N1G4 85 102 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 6.7737E-07 85.288 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.59127 0.56022 6.6551 5 Median 0.59127 0.56022 NaN 1 0 Median 0.6664 0.57814 NaN 1 0 Median 0.54584 0.55874 NaN 1 0 Median 0.72108 0.60179 NaN 1 0 Median 0.52064 0.503 NaN 1 0 Median NaN NaN NaN 0 0 Median 28054000 16986000 11068000 14777000 8913800 5863500 3740900 2216300 1524500 7396500 4580400 2816100 1686300 965870 720390 452870 309370 143500 0 0 0 25153 3359 26497 133769;133770;133771;133772;133773 134471;134472;134473;134474;134475;134476 134472 6 NALKQETEVELYNEFPEPIK KEAINVEQAFQTIARNALKQETEVELYNEF ETEVELYNEFPEPIKLDKNDRAKASAESCS R N A I K L 1 0 2 0 0 1 5 0 0 1 2 2 0 1 2 0 1 0 1 1 0 0 20 1 2390.2006 P51149;C9J8S3;C9J4V0;C9J4S4 P51149 172 191 RAB7A Ras-related protein Rab-7a yes no 3 6.5407E-09 78.088 By MS/MS 1 0.84226 0.85596 NaN 1 Median 0.84226 0.85596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13658000 7416900 6241100 13658000 7416900 6241100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25154 2428 26498 133774 134477;134478 134478 2 NALKWDKDNLQILR QRSDKKYDEAIKCYRNALKWDKDNLQILRD RNALKWDKDNLQILRDLSLLQIQMRDLEGY R N A L R D 1 1 2 2 0 1 0 0 0 1 3 2 0 0 0 0 0 1 0 0 0 0 14 2 1725.9526 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 105 118 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 3 0.015525 24.53 By MS/MS 1 1.0128 1.1512 NaN 1 Median 1.0128 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4195300 2176400 2018900 4195300 2176400 2018900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25155 213 26499 133775 134479 134479 1 NALLQLTDSQIADVAR VESVFDIMEMEDEERNALLQLTDSQIADVA ALLQLTDSQIADVARFCNRYPNIELSYEVV R N A A R F 3 1 1 2 0 2 0 0 0 1 3 0 0 0 0 1 1 0 0 1 0 0 16 0 1726.9214 O75643 O75643 1994 2009 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.4224E-46 218.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 2 1 1 1.1357 1.0375 14.832 17 Median 1.1089 1.098 16.047 4 0 Median 1.235 1.045 23.913 4 0 Median 0.93416 1.0334 2.9803 5 2 Median 1.3257 1.164 7.4355 2 0 Median 0.87716 0.93643 NaN 1 0 Median 1.1871 0.95493 NaN 1 0 Median 87459000 41253000 46207000 18906000 8767100 10139000 16927000 7596700 9329900 38665000 19357000 19308000 5359800 2248700 3111100 1182000 604260 577720 6420200 2678900 3741200 25156 1688 26500 133776;133777;133778;133779;133780;133781;133782;133783;133784;133785;133786;133787;133788;133789;133790;133791;133792 134480;134481;134482;134483;134484;134485;134486;134487;134488;134489;134490;134491;134492;134493;134494;134495;134496;134497;134498;134499 134486 19 NALLSLAK DLAKDITSDTSGDFRNALLSLAKGDRSEDF DTSGDFRNALLSLAKGDRSEDFGVNEDLAD R N A A K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 828.5069 P04083;Q5T3N1 P04083 178 185 ANXA1 Annexin A1;Annexin yes no 2 0.0034121 97.798 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 1.3221 1.127 12.346 9 Median 1.2262 1.119 22.675 2 0 Median 1.3184 1.1253 6.5299 4 0 Median 1.4863 1.4304 NaN 1 0 Median 1.3375 1.1296 7.6129 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 165470000 70729000 94745000 103040000 44034000 59006000 46213000 20097000 26116000 12023000 4857300 7165300 4197600 1740000 2457600 0 0 0 0 0 0 25157 1844 26501 133793;133794;133795;133796;133797;133798;133799;133800;133801 134500;134501;134502;134503;134504;134505;134506;134507;134508;134509;134510 134506 11 NALNVLQR FQEVLGRKDKADSTRNALNVLQRFKFLFNL DKADSTRNALNVLQRFKFLFNLPLNIERNI R N A Q R F 1 1 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 926.52976 Q96KP1 Q96KP1 272 279 EXOC2 Exocyst complex component 2 yes yes 2 0.0040524 83.801 By matching By MS/MS 1 1 1.1107 1.0625 1.5816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97866 1.0506 NaN 1 0 Median 1.2606 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4619800 2157400 2462400 0 0 0 0 0 0 3374000 1626300 1747700 1245700 531000 714740 0 0 0 0 0 0 25158 3695 26502 133802;133803 134511 134511 1 NALPPVLTTVNGQSPPEHSAPAK DFVEAPPPKVNPWTKNALPPVLTTVNGQSP TVNGQSPPEHSAPAKVVRAAVPKQRKGSKV K N A A K V 3 0 2 0 0 1 1 1 1 0 2 1 0 0 5 2 2 0 0 2 0 0 23 0 2324.2125 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 130 152 LARP1 La-related protein 1 yes no 3 0.0061959 25.924 By MS/MS 1 0.39989 0.38982 NaN 1 Median 0.39989 0.38982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5301200 4214300 1087000 5301200 4214300 1087000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25159 3176 26503 133804 134512 134512 1 NALQELQQIIITPIK LKSLEKDVLEGGNLRNALQELQQIIITPIK NALQELQQIIITPIKAYSVLQATVAAATTT R N A I K A 1 0 1 0 0 3 1 0 0 4 2 1 0 0 1 0 1 0 0 0 0 0 15 0 1721.0087 A0A087WZT0;M0QZ22;Q5PRF9 A0A087WZT0 378 392 SAMD4B Protein Smaug homolog 2 yes no 2 0.023073 26.043 By MS/MS By matching By matching 1 1 1 0.99812 0.90966 4.6568 3 Median 0.96965 0.97915 NaN 1 0 Median 0.99812 0.89827 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0241 0.90966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1775300 920320 855010 1154900 623680 531240 558560 272680 285880 0 0 0 61852 23958 37894 0 0 0 0 0 0 25160 98 26504 133805;133806;133807 134513 134513 1 NALQQENHIIDGVK RGLGWVQFSSEEGLRNALQQENHIIDGVKV RNALQQENHIIDGVKVQVHTRRPKLPQTSD R N A V K V 1 0 2 1 0 2 1 1 1 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1577.8162 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJW7 Q9GZT3 75 88 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2;3 4.4045E-32 205.49 By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1.2895 1.1567 17.685 10 Median 1.2276 1.1243 13.515 4 0 Median 1.4829 1.2144 17.605 3 0 Median 1.0815 1.0319 19.631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.002 0.89419 NaN 1 0 Median 337650000 141400000 196250000 65174000 29923000 35252000 235350000 94111000 141240000 35201000 16427000 18774000 0 0 0 0 0 0 1925100 939290 985820 25161 3914 26505 133808;133809;133810;133811;133812;133813;133814;133815;133816;133817 134514;134515;134516;134517;134518;134519;134520;134521;134522;134523;134524;134525;134526;134527 134527 14 NALSSALAQNTDLKER QDASSSPSAQVIGLKNALSSALAQNTDLKE ALSSALAQNTDLKERLRRIHAESLLLDSPA K N A E R L 3 1 2 1 0 1 1 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 16 1 1729.8959 Q9H4L5 Q9H4L5 382 397 OSBPL3 Oxysterol-binding protein-related protein 3 yes yes 3 0.0012707 34.909 By MS/MS 1 0.80742 0.84015 NaN 1 Median 0.80742 0.84015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616800 2580800 2036000 4616800 2580800 2036000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25162 3967 26506 133818 134528 134528 1 NALSSLWGK EYLYFFRVLVPATDRNALSSLWGKLASEIL VPATDRNALSSLWGKLASEILMQNWDAAME R N A G K L 1 0 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 1 0 0 0 0 9 0 974.51853 P60228;E5RGA2;E5RHS5 P60228 164 172 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.00098548 86.953 By MS/MS By matching By matching By matching 3 1 1 1 1.0535 0.93645 21.643 6 Median 1.0992 0.80367 14.788 3 0 Plateau 1.0035 0.84819 NaN 1 0 Median 1.2605 1.3845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2612 1.0804 NaN 1 0 Median 11411000 5278700 6132300 10425000 4818600 5606800 246030 140260 105780 516720 228530 288190 0 0 0 0 0 0 222860 91325 131540 25163 2524 26507 133819;133820;133821;133822;133823;133824 134529;134530 134529 2 NALTALFTSSGRPPSQPNTQDKTPSK PTTRPVSRRCAINARNALTALFTSSGRPPS RPPSQPNTQDKTPSKVTARPSQPPLPRRST R N A S K V 2 1 2 1 0 2 0 1 0 0 2 2 0 1 4 4 4 0 0 0 0 0 26 2 2742.3937 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3;A0A494C0L7 H0Y5D5 776 801 CIZ1 Cip1-interacting zinc finger protein yes no 3 1.4913E-08 44.158 By MS/MS 1 0.31807 0.36244 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31807 0.36244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3895400 2741700 1153700 0 0 0 0 0 0 3895400 2741700 1153700 0 0 0 0 0 0 0 0 0 25164 1028 26508 133825 134531 134531 1 NALTTLAGPLTPPVK EASAMLPLECQYLNKNALTTLAGPLTPPVK NALTTLAGPLTPPVKHFQLKRKPKSATLRA K N A V K H 2 0 1 0 0 0 0 1 0 0 3 1 0 0 3 0 3 0 0 1 0 0 15 0 1491.8661 H0Y3X6;A0A0C4DFX9;Q9H3P2;C9JEM7;H7C2C7;C9JHL4;H7C0W2 H0Y3X6 151 165 NELFA Negative elongation factor A yes no 2 0.00037043 60.434 By matching By matching By MS/MS By matching 1 1 1 2 0.60225 0.58184 12.522 5 Median 0.60225 0.58184 NaN 1 0 Median 0.55771 0.49389 NaN 1 0 Median 0.45636 0.48498 NaN 1 0 Median 0.75157 0.6258 1.102 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4572900 3007400 1565500 2046900 1388600 658240 195140 110010 85132 1959200 1313000 646220 371700 195810 175900 0 0 0 0 0 0 25165 231 26509 133826;133827;133828;133829;133830 134532 134532 1 NALWEPK KAGKLDRGAASRFVKNALWEPKSKNASKVA GAASRFVKNALWEPKSKNASKVANKGKSKS K N A P K S 1 0 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 7 0 856.4443 J3KPZ4;Q13901 J3KPZ4 159 165 C1D Nuclear nucleic acid-binding protein C1D yes no 2 0.021555 58.981 By matching By MS/MS By matching 1 1 1 1.2273 1.1821 86.958 3 Plateau NaN NaN NaN 0 0 Median 0.25707 0.23517 NaN 1 0 Median 1.2273 1.1821 NaN 1 0 Median 1.1336 0.9226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7581900 3703200 3878700 0 0 0 380160 264410 115750 5848900 2771100 3077800 1352800 667670 685140 0 0 0 0 0 0 25166 1314 26510 133831;133832;133833 134533 134533 1 NAMGSLASQATK LENLPGVDPNNEAIRNAMGSLASQATKDGK AIRNAMGSLASQATKDGKKDKKEEDKK___ R N A T K D 3 0 1 0 0 1 0 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 12 0 1177.5761 P55036;Q5VWC4;H0Y3Y9;H0Y561 P55036 354 365 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 2 4.5969E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3539 1.1819 19.202 4 Median 1.0821 1.0034 NaN 1 0 Median 1.2308 1.0431 NaN 1 0 Median 1.516 1.4903 NaN 1 1 Median 1.4893 1.3391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41053000 17967000 23086000 12021000 5900400 6120400 11830000 5477600 6352300 5629300 2522200 3107000 11573000 4066600 7506500 0 0 0 0 0 0 25167 2491 26511 133834;133835;133836;133837 134534;134535;134536;134537;134538;134539 134537 6 NANAVMEYEK LELDHKNAQAQQEFKNANAVMEYEKIAETD QQEFKNANAVMEYEKIAETDFEKRDFRKVV K N A E K I 2 0 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 10 0 1167.523 Q99615;K7ESP1;K7EIH8;K7EPP7;K7EJL5;K7EN19;K7EJV7;K7ER44 Q99615 138 147 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 0.0006139 94.692 By MS/MS By MS/MS 1 1 1.2774 1.1378 6.5721 2 Median 1.1544 1.0862 NaN 1 0 Median 1.4135 1.1919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17582000 7361900 10220000 10758000 4475800 6282000 6823900 2886100 3937800 0 0 0 0 0 0 0 0 0 0 0 0 25168 3759 26512 133838;133839 134540;134541 134541 2 NANFEALPEDWR EEWKQQQLVSGMAERNANFEALPEDWRARL AERNANFEALPEDWRARLKRRKMAPNT___ R N A W R A 2 1 2 1 0 0 2 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 12 0 1460.6684 Q8N3X1 Q8N3X1 994 1005 FNBP4 Formin-binding protein 4 yes yes 2 3.2995E-05 96.342 By matching By MS/MS By matching 1 1 1 0.71287 0.63338 13.149 3 Median 0.6156 0.61676 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71287 0.78396 NaN 1 0 Median 0.72888 0.63338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9365400 5196400 4169000 988820 631140 357680 0 0 0 8288400 4513800 3774700 88095 51459 36635 0 0 0 0 0 0 25169 3370 26513 133840;133841;133842 134542;134543 134542 2 NAPAIIFIDELDAIAPK ESESNLRKAFEEAEKNAPAIIFIDELDAIA PAIIFIDELDAIAPKREKTHGEVERRIVSQ K N A P K R 4 0 1 2 0 0 1 0 0 4 1 1 0 1 2 0 0 0 0 0 0 0 17 0 1809.9877 P55072 P55072 296 312 VCP Transitional endoplasmic reticulum ATPase yes yes 2 2.3535E-10 101.53 By MS/MS By MS/MS By matching 4 1 2 0.79438 0.77995 12.246 7 Median 0.78232 0.74681 11.592 4 0 Median 0.90076 0.7872 NaN 1 0 Median 0.82223 0.85391 8.7609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20549000 10912000 9637100 13358000 7163500 6194300 5896200 3028100 2868000 1294800 720030 574770 0 0 0 0 0 0 0 0 0 25170 2494 26514 133843;133844;133845;133846;133847;133848;133849 134544;134545;134546;134547;134548 134544 5 NAPNDASYDAVR ENVNSLLPVFEEFLKNAPNDASYDAVRQSV FLKNAPNDASYDAVRQSVVVLMGSLAKHLD K N A V R Q 3 1 2 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 12 0 1291.5793 Q92616 Q92616 1305 1316 GCN1L1 Translational activator GCN1 yes yes 2 0.0012088 84.17 By MS/MS By MS/MS 1 2 0.9889 0.83729 43.401 3 Median 0.74505 0.74812 NaN 1 1 Median 1.3986 1.1817 48.725 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5705200 2270700 3434500 1236900 546700 690170 4468400 1724000 2744300 0 0 0 0 0 0 0 0 0 0 0 0 25171 3544 26515 133850;133851;133852 134549;134550;134551 134550 3 NAPSVPPQNTPQEAQQVDMWK RVAKEYETVMKGLDRNAPSVPPQNTPQEAQ PQNTPQEAQQVDMWKKYIQWEKSNPLRTED R N A W K K 2 0 2 1 0 4 1 0 0 0 0 1 1 0 4 1 1 1 0 2 0 0 21 0 2364.1168 Q12996;E9PLP8 Q12996 233 253 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.00013597 34.689 By MS/MS By matching 1 1 0.50313 0.47546 17.622 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40861 0.41975 NaN 1 0 Median 0.6195 0.53855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8998300 6024700 2973600 0 0 0 0 0 0 8252700 5591400 2661300 745550 433240 312310 0 0 0 0 0 0 25172 2777 26516 133853;133854 134552;134553 134553 2 NAPVTFIVDGAVVK CAKCGLPLFYQSQPKNAPVTFIVDGAVVKF KNAPVTFIVDGAVVKFGQGFGKTNIYTQKQ K N A V K F 2 0 1 1 0 0 0 1 0 1 0 1 0 1 1 0 1 0 0 4 0 0 14 0 1428.7977 Q9H5V9 Q9H5V9 108 121 CXorf56 UPF0428 protein CXorf56 yes yes 2 0.00024987 75.819 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0354 0.95356 8.9274 6 Median 0.91348 0.90687 3.8097 2 1 Median NaN NaN NaN 0 0 Median 1.1249 1.0796 7.4366 2 0 Median 1.1348 0.93645 NaN 1 0 Median 0.95024 0.97099 NaN 1 0 Median NaN NaN NaN 0 0 Median 21912000 10938000 10975000 6503100 3184100 3319000 0 0 0 9162900 4301500 4861400 850360 397450 452910 5395900 3054600 2341300 0 0 0 25173 3970 26517 133855;133856;133857;133858;133859;133860 134554;134555;134556;134557;134558;134559 134555 6 NAPWTLTPEFLAEHR YDAVQHCRYVDEVVRNAPWTLTPEFLAEHR NAPWTLTPEFLAEHRIDFVAHDDIPYSSAG R N A H R I 2 1 1 0 0 0 2 0 1 0 2 0 0 1 2 0 2 1 0 0 0 0 15 0 1780.8897 C9J050;C9JEJ2;P49585;H7C1T3;H7BZN1;C9J2E1 C9J050 148 162 PCYT1A Choline-phosphate cytidylyltransferase A yes no 3 0.03588 24.191 By MS/MS 1 0.96874 1.0535 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96874 1.0535 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2346200 1288500 1057700 0 0 0 0 0 0 2346200 1288500 1057700 0 0 0 0 0 0 0 0 0 25174 666 26518 133861 134560 134560 1 NAQAIEDMVGYAQETQHEK EAAGLALGLVMLGSKNAQAIEDMVGYAQET IEDMVGYAQETQHEKILRGLAVGIALVMYG K N A E K I 3 0 1 1 0 3 3 1 1 1 0 1 1 0 0 0 1 0 1 1 0 0 19 0 2160.9746 A0A087WW66;Q99460;H7C378 A0A087WW66 525 543 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 5.07E-10 88.565 By MS/MS 3 1.049 0.99185 12.664 3 Median 1.049 0.99185 12.664 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24730000 12290000 12440000 24730000 12290000 12440000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25175 54 26519 133862;133863;133864 134561;134562;134563 134561 3 NAQEALQAIETK LIVSWSKLIKNGDIKNAQEALQAIETKVAL DIKNAQEALQAIETKVALMLQLLIHEDDDI K N A T K V 3 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1314.6779 O43592 O43592 317 328 XPOT Exportin-T yes yes 2 0.00061097 68.657 By MS/MS By matching 1 1 1.035 1.0684 10.558 2 Median 1.0235 0.99157 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0466 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14346000 6594200 7752200 9598900 4447700 5151200 0 0 0 4747600 2146500 2601000 0 0 0 0 0 0 0 0 0 25176 1576 26520 133865;133866 134564 134564 1 NAQMAQSPILLLGGAASTLLQNR VTAGPGLTNTVTAVKNAQMAQSPILLLGGA ILLLGGAASTLLQNRGALQAVDQLSLFRPL K N A N R G 4 1 2 0 0 3 0 2 0 1 5 0 1 0 1 2 1 0 0 0 0 0 23 0 2366.274 M0R026;A1L0T0;M0R1B5;E9PJS0;E9PL44 M0R026 28 50 ILVBL Acetolactate synthase-like protein yes no 3 0.028332 12.802 By MS/MS 3 0.88926 0.87492 0.44001 3 Median 0.88926 0.87492 0.44001 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1756300 950970 805370 1756300 950970 805370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25177 492 26521 133867;133868;133869 134565;134566 134565 2 NASDMPETITSR IFFGALRSVRCARGKNASDMPETITSRDAA RGKNASDMPETITSRDAARFPIIASCTLLG K N A S R D 1 1 1 1 0 0 1 0 0 1 0 0 1 0 1 2 2 0 0 0 0 0 12 0 1320.598 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72;A0A0C4DGU3 A0A3B3IUB5 62 73 HM13 Minor histocompatibility antigen H13 yes no 2 3.4877E-22 203.02 By MS/MS By MS/MS 2 4 1.1697 1.0214 13.105 6 Median 1.1621 1.1132 5.4914 2 0 Median 1.1859 0.97039 12.547 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137620000 62005000 75616000 29751000 12893000 16857000 107870000 49112000 58759000 0 0 0 0 0 0 0 0 0 0 0 0 25178 444 26522;26523 133870;133871;133872;133873;133874;133875 134567;134568;134569;134570;134571;134572;134573;134574;134575;134576;134577 134572 199 11 NASEMIDKLTLTFNR SEQSARMTAMDNASKNASEMIDKLTLTFNR NASEMIDKLTLTFNRTRQAVITKELIEIIS K N A N R T 1 1 2 1 0 0 1 0 0 1 2 1 1 1 0 1 2 0 0 0 0 0 15 1 1751.8876 P36542 P36542 263 277 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 3 4.3562E-05 78.373 By MS/MS 1 0.80318 0.80065 NaN 1 Median 0.80318 0.80065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4566800 2282100 2284700 4566800 2282100 2284700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25179 2257 26524 133876 134578;134579 134579 2 NASGFLTIFSK GEAGDESIFSIMIDRNASGFLTIFSKAEDL MIDRNASGFLTIFSKAEDLFRRLSAVLHQH R N A S K A 1 0 1 0 0 0 0 1 0 1 1 1 0 2 0 2 1 0 0 0 0 0 11 0 1183.6237 Q8NCM8;A0A3B3ISP9 Q8NCM8 832 842 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.0064539 44.203 By MS/MS By matching 2 1 0.79716 0.85242 5.0877 3 Plateau 0.82733 0.81043 7.1435 2 0 Median NaN NaN NaN 0 0 Median 0.74392 0.81901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4652900 2588500 2064500 4008000 2258300 1749700 0 0 0 644950 330170 314770 0 0 0 0 0 0 0 0 0 25180 3418 26525 133877;133878;133879 134580 134580 1 NASIHTLLDALER ALYAMLMKWVNKTGRNASIHTLLDALERME GRNASIHTLLDALERMEERHAREKIQDLLV R N A E R M 2 1 1 1 0 0 1 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1451.7732 F8U8C0;O00220 F8U8C0 264 276 TNFRSF10A Tumor necrosis factor receptor superfamily member 10A yes no 2 0.0012104 57.532 By MS/MS 1 1.1065 0.94888 NaN 1 Median NaN NaN NaN 0 0 Median 1.1065 0.94888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2102600 977930 1124600 0 0 0 2102600 977930 1124600 0 0 0 0 0 0 0 0 0 0 0 0 25181 1054 26526 133880 134581 134581 1 NASILLEELDLEK SIVQAKDRQAAEANKNASILLEELDLEKLR NKNASILLEELDLEKLREESRRLALAAKRE K N A E K L 1 0 1 1 0 0 3 0 0 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1485.7926 H0YM23;O75179;H0YLQ3 H0YM23 1339 1351 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 5.9027E-07 106.01 By matching By MS/MS 1 5 1.4187 1.2618 35.983 5 Median 1.3045 1.2461 NaN 1 0 Median 1.5417 1.3682 39.337 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28695000 13455000 15240000 681780 342850 338930 28014000 13112000 14901000 0 0 0 0 0 0 0 0 0 0 0 0 25182 1197 26527 133881;133882;133883;133884;133885;133886 134582;134583;134584 134582 3 NASLQDTLEVLQSSYK LTVELEQKIQVLQSKNASLQDTLEVLQSSY ASLQDTLEVLQSSYKNLENELELTKMDKMS K N A Y K N 1 0 1 1 0 2 1 0 0 0 3 1 0 0 0 3 1 0 1 1 0 0 16 0 1794.9 P49454 P49454 2576 2591 CENPF Centromere protein F yes yes 2 0.0024609 36.982 By matching By matching By MS/MS By matching 1 1 1 1 1.0466 1.0904 37.153 4 Median 1.008 1.001 NaN 1 0 Median 2.128 1.8853 NaN 1 0 Median 1.0867 1.1877 NaN 1 0 Median 0.83719 0.78128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4061100 1978200 2082900 1199300 577570 621750 550120 320530 229590 2211300 1024900 1186400 100370 55256 45116 0 0 0 0 0 0 25183 2383 26528 133887;133888;133889;133890 134585 134585 1 NASMNTQHGTATEVAVETTTPK DEDYCPRSKKANLGKNASMNTQHGTATEVA HGTATEVAVETTTPKQGQNLWFLCDSQKEL K N A P K Q 3 0 2 0 0 1 2 1 1 0 0 1 1 0 1 1 6 0 0 2 0 0 22 0 2287.075 Q9UIG0 Q9UIG0 964 985 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 1.7586E-14 86.546 By MS/MS By MS/MS 2 2 0.98123 0.84264 10.829 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85744 0.88803 17.984 2 0 Median 1.0041 0.84264 0.92225 2 2 Median 50748000 27772000 22976000 0 0 0 0 0 0 0 0 0 0 0 0 43998000 24289000 19709000 6750000 3482800 3267300 25184 4290 26529 133891;133892;133893;133894 134586;134587;134588;134589 134587 4 NASNDIVR NHGGDIIDYLLNQLKNASNDIVRHGGSLGL YLLNQLKNASNDIVRHGGSLGLGLAAMGTA K N A V R H 1 1 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 8 0 887.44609 A0A087WW66;Q99460 A0A087WW66 467 474 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0035841 87.323 By MS/MS 1 1.184 1.0121 NaN 1 Median NaN NaN NaN 0 0 Median 1.184 1.0121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2723100 1121900 1601300 0 0 0 2723100 1121900 1601300 0 0 0 0 0 0 0 0 0 0 0 0 25185 54 26530 133895 134590;134591 134591 2 NASTFEDVTQVSSAYQK GFGGKYGVQKDRMDKNASTFEDVTQVSSAY STFEDVTQVSSAYQKTVPVEAVTSKTSNIR K N A Q K T 2 0 1 1 0 2 1 0 0 0 0 1 0 1 0 3 2 0 1 2 0 0 17 0 1873.8694 Q14247 Q14247 320 336 CTTN Src substrate cortactin yes yes 2 6.1191E-06 83.617 By MS/MS By matching 3 3 1.2042 1.118 15.445 6 Median 1.1589 1.1089 19.636 3 0 Median 1.2512 1.1271 12.947 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18322000 8208700 10113000 16192000 7317700 8874300 2129600 891050 1238500 0 0 0 0 0 0 0 0 0 0 0 0 25186 2868 26531 133896;133897;133898;133899;133900;133901 134592;134593 134592 2 NATDAVGIVLK SPLGEVVEQGITRVRNATDAVGIVLKELKR TRVRNATDAVGIVLKELKRQSSLGMFHLLV R N A L K E 2 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1099.6237 P51398;V9GZ03;V9GYL9;V9GYA7;V9GYJ9;V9GYC9;V9GYW1;V9GY11 P51398 235 245 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 0.00065281 65.305 By MS/MS By MS/MS By matching 1 1 1 1.07 0.94195 16.959 3 Median 1.022 0.94195 NaN 1 0 Median 1.4422 1.2291 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.07 0.89682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38999000 17910000 21088000 26581000 12856000 13724000 11741000 4662300 7078900 0 0 0 677040 391930 285110 0 0 0 0 0 0 25187 2431 26532 133902;133903;133904 134594;134595;134596;134597 134595 4 NATLVAGR VAGLTLLAVGVYSAKNATLVAGRFIEARLG VGVYSAKNATLVAGRFIEARLGKPSLVRET K N A G R F 2 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 800.45045 H0Y2W2;Q9NVI7 H0Y2W2 252 259 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 0.015729 69.998 By MS/MS 1 2.9033 2.5113 NaN 1 Median NaN NaN NaN 0 0 Median 2.9033 2.5113 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11618000 1391600 10226000 0 0 0 11618000 1391600 10226000 0 0 0 0 0 0 0 0 0 0 0 0 25188 1140;4133 26533 133905 134598 134598 1 NATMPVTMLIR NVLIVCVPNPPIDEKNATMPVTMLIRVKTS IDEKNATMPVTMLIRVKTSEDADELHKILL K N A I R V 1 1 1 0 0 0 0 0 0 1 1 0 2 0 1 0 2 0 0 1 0 0 11 0 1245.6573 Q9UKX7 Q9UKX7 438 448 NUP50 Nuclear pore complex protein Nup50 yes yes 2 0.00022785 73.985 By MS/MS By MS/MS 1 1 0.84671 0.84359 0.51668 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8549 0.84668 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8386 0.84051 NaN 1 0 Median NaN NaN NaN 0 0 Median 33173000 18618000 14556000 0 0 0 0 0 0 28867000 16276000 12590000 0 0 0 4306500 2341300 1965200 0 0 0 25189 4317 26534 133906;133907 134599;134600;134601 134600 3 NATNVEQAFMTMAAEIK FADSLGIPFLETSAKNATNVEQAFMTMAAE TNVEQAFMTMAAEIKKRMGPGAASGGERPN K N A I K K 4 0 2 0 0 1 2 0 0 1 0 1 2 1 0 0 2 0 0 1 0 0 17 0 1867.8808 Q9H0U4;E9PLD0;Q92928 Q9H0U4 154 170 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 3 7.4722E-05 46.249 By MS/MS By matching 3 2 1.1862 1.0841 6.2757 5 Median 1.1766 1.0923 8.1708 3 0 Median 1.2307 1.0571 3.5616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25430000 11100000 14330000 23480000 10307000 13173000 1949200 792620 1156600 0 0 0 0 0 0 0 0 0 0 0 0 25190 3929 26535 133908;133909;133910;133911;133912 134602;134603 134602 2 NATNVEQAFMTMAAEIKK FADSLGIPFLETSAKNATNVEQAFMTMAAE NVEQAFMTMAAEIKKRMGPGAASGGERPNL K N A K K R 4 0 2 0 0 1 2 0 0 1 0 2 2 1 0 0 2 0 0 1 0 0 18 1 1995.9758 Q9H0U4;E9PLD0;Q92928 Q9H0U4 154 171 RAB1B;RAB1C Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 3 0.047944 9.4742 By MS/MS By matching 2 1 1.1918 1.2177 6.3089 3 Plateau 1.1317 1.1869 6.2725 2 0 Median 1.1918 1.0981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363500 2879500 3483900 6203700 2823300 3380400 159780 56238 103540 0 0 0 0 0 0 0 0 0 0 0 0 25191 3929 26536 133913;133914;133915 134604;134605 134605 2 NATNVEQSFMTMAAEIK FADSLGIPFLETSAKNATNVEQSFMTMAAE TNVEQSFMTMAAEIKKRMGPGATAGGAEKS K N A I K K 3 0 2 0 0 1 2 0 0 1 0 1 2 1 0 1 2 0 0 1 0 0 17 0 1883.8757 E7END7;P62820 E7END7 125 141 RAB1A Ras-related protein Rab-1A yes no 2;3 2.2545E-05 69.451 By MS/MS By matching By matching 4 2 1 1.1221 1.0368 10.688 7 Median 1.0981 1.0172 11.495 4 0 Median 1.2374 1.07 1.2131 2 0 Median 0.96207 0.87395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64887000 29499000 35388000 62942000 28683000 34258000 1688200 697800 990390 257080 117930 139150 0 0 0 0 0 0 0 0 0 25192 863 26537;26538 133916;133917;133918;133919;133920;133921;133922 134606;134607;134608;134609;134610;134611 134609 311 6 NATNVEQSFMTMAAEIKK FADSLGIPFLETSAKNATNVEQSFMTMAAE NVEQSFMTMAAEIKKRMGPGATAGGAEKSN K N A K K R 3 0 2 0 0 1 2 0 0 1 0 2 2 1 0 1 2 0 0 1 0 0 18 1 2011.9707 E7END7;P62820 E7END7 125 142 RAB1A Ras-related protein Rab-1A yes no 3 0.0025806 26.146 By MS/MS By matching By matching 1 1 1 1.1522 1.1699 2.9396 3 Median 1.149 1.1699 NaN 1 0 Median 1.2308 1.1327 NaN 1 0 Median 1.1522 1.2012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4049400 1788800 2260600 3176600 1336100 1840500 255300 120310 134990 617460 332370 285090 0 0 0 0 0 0 0 0 0 25193 863 26539 133923;133924;133925 134612;134613 134613 2 NATTDALTSVLTK QSFMLLKKWVTRDGKNATTDALTSVLTKIN GKNATTDALTSVLTKINRIDIVTLLEGPIF K N A T K I 2 0 1 1 0 0 0 0 0 0 2 1 0 0 0 1 4 0 0 1 0 0 13 0 1333.7089 Q12955;A0A087WZ65;A0A087WTF3;A0A087WWI5;H0YA66;H0YAH5;A0A087WTE8;A0A087WVC2;H0Y3A4 Q12955 4148 4160 ANK3 Ankyrin-3 yes no 2 0.00010624 98.353 By MS/MS 1 1.1163 1.2343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1163 1.2343 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9663300 2923100 6740200 0 0 0 0 0 0 9663300 2923100 6740200 0 0 0 0 0 0 0 0 0 25194 2773 26540 133926 134614 134614 1 NAVASVQNGPGGGPSSSSIGSASK MIPENEFHHKDPPPRNAVASVQNGPGGGPS PGGGPSSSSIGSASKSDESSTEETDKSRER R N A S K S 3 0 2 0 0 1 0 5 0 1 0 1 0 0 2 7 0 0 0 2 0 0 24 0 2115.0192 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1195 1218 THOC2 THO complex subunit 2 yes no 2;3 1.6744E-09 74.222 By MS/MS By MS/MS 3 1 0.66903 0.74398 1.1361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66903 0.74398 1.1361 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12601000 7153400 5447800 0 0 0 0 0 0 12601000 7153400 5447800 0 0 0 0 0 0 0 0 0 25195 3448 26541 133927;133928;133929;133930 134615;134616;134617;134618 134617 4 NAVEEYVYDFR MIMQDKLEKERNDAKNAVEEYVYDFRDRLG NDAKNAVEEYVYDFRDRLGTVYEKFITPED K N A F R D 1 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 0 0 2 2 0 0 11 0 1403.6357 O95757;E9PDE8 O95757 622 632 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.00020133 103.55 By MS/MS By matching 1 1 1.4467 1.3434 19.399 2 Median 1.2112 1.1712 NaN 1 0 Median 1.728 1.5409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4983500 2175100 2808500 4896900 2136400 2760500 86600 38651 47949 0 0 0 0 0 0 0 0 0 0 0 0 25196 1790 26542 133931;133932 134619 134619 1 NAVEEYVYEFR MIMQDKLEKERNDAKNAVEEYVYEFRDKLC NDAKNAVEEYVYEFRDKLCGPYEKFICEQD K N A F R D 1 1 1 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 2 2 0 0 11 0 1417.6514 Q92598;A0A0A0MSM0 Q92598 636 646 HSPH1 Heat shock protein 105 kDa yes no 2 0.00011409 145.72 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.2683 1.2222 34.262 5 Median 1.2683 1.2222 NaN 1 0 Median 0.95755 0.83111 NaN 1 0 Median 1.7406 1.8606 NaN 1 0 Median 1.1988 1.0286 32.253 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15196000 6070700 9125500 10540000 4060600 6479600 2390500 1144300 1246200 1929600 702920 1226700 335990 162900 173090 0 0 0 0 0 0 25197 3541 26543 133933;133934;133935;133936;133937 134620;134621;134622;134623;134624 134620 5 NAVEEYVYEMR MIMQDKLEKERNDAKNAVEEYVYEMRDKLS NDAKNAVEEYVYEMRDKLSGEYEKFVSEDD K N A M R D 1 1 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 2 0 0 11 0 1401.6235 P34932;A0A087WYC1 P34932 619 629 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.00013269 145.72 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 4 1 2 1 1 1.129 1.0121 8.8978 13 Median 1.2207 1.1727 5.4498 4 2 Linear 1.1112 0.96986 6.0226 4 0 Median 1.1181 1.1868 NaN 1 0 Median 1.1187 0.9535 4.4692 2 0 Median 1.0417 1.1049 NaN 1 1 Median 1.1832 1.0023 NaN 1 0 Median 119050000 51645000 67402000 92606000 40415000 52191000 9867300 4189800 5677500 11498000 4736000 6761800 2495200 1068700 1426500 2426300 1171200 1255100 155030 64912 90120 25198 2230 26544;26545 133938;133939;133940;133941;133942;133943;133944;133945;133946;133947;133948;133949;133950 134625;134626;134627;134628;134629;134630;134631;134632;134633;134634;134635;134636;134637 134633 970 13 NAVITVPAYFNDSQR KMKETAENYLGHTAKNAVITVPAYFNDSQR NAVITVPAYFNDSQRQATKDAGQISGLNVL K N A Q R Q 2 1 2 1 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 2 0 0 15 0 1693.8424 P38646 P38646 188 202 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 7.0744E-10 138.75 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 5 1 1 1 1.1473 1.0108 10.524 12 Median 1.0548 0.99073 7.2488 4 1 Median 1.1689 1.0122 8.4739 5 0 Median 0.98901 0.99741 NaN 1 0 Median 1.2545 1.0496 NaN 1 0 Median 1.3048 1.3485 NaN 1 0 Median NaN NaN NaN 0 0 Median 189050000 82618000 106430000 111380000 46721000 64660000 36681000 16444000 20237000 30760000 15110000 15650000 3384400 1481700 1902700 6844300 2861400 3983000 0 0 0 25199 2277 26546 133951;133952;133953;133954;133955;133956;133957;133958;133959;133960;133961;133962;133963 134638;134639;134640;134641;134642;134643;134644;134645;134646;134647;134648;134649;134650;134651;134652;134653;134654;134655;134656 134648 19 NAVIVALSSK YTKKIENLCAMGFDRNAVIVALSSKSWDVE MGFDRNAVIVALSSKSWDVETATELLLSN_ R N A S K S 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 2 0 0 10 0 1000.5917 P61086 P61086 177 186 UBE2K Ubiquitin-conjugating enzyme E2 K yes yes 2 0.00046738 104.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 3 6 5 1.1127 1.0145 34.116 24 Median 1.1328 0.99787 2.8842 3 0 Median 1.4316 1.2558 18.263 5 2 Median 1.002 0.99044 4.9306 2 0 Median 1.2538 1.101 60.184 3 0 Median 0.89345 0.96727 46.693 6 1 Median 1.3021 1.162 25.432 5 1 Median 724380000 363870000 360510000 61501000 28058000 33442000 23112000 10652000 12461000 38755000 19203000 19552000 17328000 6362100 10966000 435890000 234300000 201590000 147790000 65288000 82503000 25200 2543 26547 133964;133965;133966;133967;133968;133969;133970;133971;133972;133973;133974;133975;133976;133977;133978;133979;133980;133981;133982;133983;133984;133985;133986;133987 134657;134658;134659;134660;134661;134662;134663;134664;134665;134666;134667;134668;134669 134657 12 NAVLAIYTIYR AIRACLEHRHSYVRRNAVLAIYTIYRNFEH YVRRNAVLAIYTIYRNFEHLIPDAPELIHD R N A Y R N 2 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 1 0 2 1 0 0 11 0 1295.7238 P53618;E9PP73 P53618 154 164 COPB1 Coatomer subunit beta yes no 2 0.00017393 79.148 By MS/MS By MS/MS By matching 1 2 2 0.97493 0.86821 48.025 5 Median 0.97493 0.94379 NaN 1 0 Median 0.99264 0.87346 0.8529 2 0 Median NaN NaN NaN 0 0 Median 0.57529 0.49235 69.841 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7015600 3445100 3570500 3746600 1899300 1847300 2416000 1106000 1310100 0 0 0 852950 439810 413140 0 0 0 0 0 0 25201 2472 26548 133988;133989;133990;133991;133992 134670;134671;134672 134672 3 NAVLEADFAKR YAPPVGGFSFDNCRRNAVLEADFAKRGYKL NCRRNAVLEADFAKRGYKLPKVRKTGTTIA R N A K R G 3 1 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 11 1 1232.6513 Q99436;Q5TBG5 Q99436 22 32 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type yes no 2 0.0053537 64.654 By MS/MS 1 1.1998 1.0869 NaN 1 Median NaN NaN NaN 0 0 Median 1.1998 1.0869 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2319400 1067400 1252000 0 0 0 2319400 1067400 1252000 0 0 0 0 0 0 0 0 0 0 0 0 25202 3744 26549 133993 134673 134673 1 NAVLNTEAR RMQQYDLQGQPYGTRNAVLNTEARTMAAEV QPYGTRNAVLNTEARTMAAEVLSRRCVLMR R N A A R T 2 1 2 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 986.51451 Q969V3 Q969V3 65 73 NCLN Nicalin yes yes 2 0.0025948 70.919 By MS/MS 2 1.4931 1.2899 34.457 2 Median NaN NaN NaN 0 0 Median 1.4931 1.2899 34.457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3873900 1561600 2312200 0 0 0 3873900 1561600 2312200 0 0 0 0 0 0 0 0 0 0 0 0 25203 3589 26550 133994;133995 134674 134674 1 NAVPITPTLNR YQGPIVLNPWDQVKRNAVPITPTLNREQLS QVKRNAVPITPTLNREQLSTSEENSKKTVD R N A N R E 1 1 2 0 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 1 0 0 11 0 1194.6721 CON__P02663 CON__P02663 115 125 yes yes 2 0.013466 56.729 By MS/MS By MS/MS 1 3 0.15093 0.12542 88.263 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15093 0.12542 88.263 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6273900 5823100 450800 0 0 0 604550 604550 0 0 0 0 5669400 5218600 450800 0 0 0 0 0 0 + 25204 743 26551 133996;133997;133998;133999 134675;134676;134677;134678 134675 4 NAVQQEDLFQQPGLR EIPKELWMMVDYLYRNAVQQEDLFQQPGLR NAVQQEDLFQQPGLRSEFEHIRDCLDTGMI R N A L R S 1 1 1 1 0 4 1 1 0 0 2 0 0 1 1 0 0 0 0 1 0 0 15 0 1741.8747 P32019 P32019 843 857 INPP5B Type II inositol 1,4,5-trisphosphate 5-phosphatase yes yes 2 1.992E-09 103.22 By MS/MS 1 0.72507 0.71252 NaN 1 Median 0.72507 0.71252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2429100 1637400 791690 2429100 1637400 791690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25205 2214 26552 134000 134679 134679 1 NAVSVHSNLNSEAVMK LQQLVSQRHSTPQNKNAVSVHSNLNSEAVM AVSVHSNLNSEAVMKSLTQTFATVEVGRWN K N A M K S 2 0 3 0 0 0 1 0 1 0 1 1 1 0 0 3 0 0 0 3 0 0 16 0 1698.8359 Q5QJE6;J3KP30 Q5QJE6 346 361 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2;3 0.00045549 52.522 By MS/MS By MS/MS 2 1 1.6778 1.6363 9.9208 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6393 1.6712 2.9826 2 1 Median 1.7172 1.4129 NaN 1 1 Median 35277000 13171000 22106000 0 0 0 0 0 0 0 0 0 0 0 0 31960000 11975000 19985000 3317100 1196200 2121000 25206 3067 26553 134001;134002;134003 134680;134681;134682;134683 134682 4 NAVTQEFGPVPDTAR IGAINIENGKANSVRNAVTQEFGPVPDTAR NAVTQEFGPVPDTARYYKKHGIRWVVIGDE R N A A R Y 2 1 1 1 0 1 1 1 0 0 0 0 0 1 2 0 2 0 0 2 0 0 15 0 1600.7845 A2A274;Q99798 A2A274 659 673 ACO2 Aconitate hydratase, mitochondrial yes no 2 3.2374E-11 116.01 By MS/MS By MS/MS 1 1 0.65781 0.62176 NaN 1 Median 0.65781 0.62176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58498000 34791000 23707000 58498000 34791000 23707000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25207 495 26554 134004;134005 134684;134685;134686;134687 134684 4 NAVVQGLEQPHGLVVHPLR NKKQINVARLDGSFKNAVVQGLEQPHGLVV QGLEQPHGLVVHPLRGKLYWTDGDNISMAN K N A L R G 1 1 1 0 0 2 1 2 2 0 3 0 0 0 2 0 0 0 0 4 0 0 19 0 2062.1436 Q07954 Q07954 1695 1713 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3;4 7.845E-19 138.39 By MS/MS By MS/MS 2 1 0.63443 0.6148 44.649 3 Median 0.57955 0.5619 12.723 2 0 Median 1.4081 1.1985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68666000 38532000 30134000 65901000 37502000 28398000 2764900 1029200 1735700 0 0 0 0 0 0 0 0 0 0 0 0 25208 2733 26555 134006;134007;134008 134688;134689;134690;134691 134690 4 NAVVVITGATSGLGK LFRLLQWVRGKAYLRNAVVVITGATSGLGK NAVVVITGATSGLGKECAKVFYAAGAKLVL R N A G K E 2 0 1 0 0 0 0 3 0 1 1 1 0 0 0 1 2 0 0 3 0 0 15 0 1385.7878 A0A0C4DGQ8;Q6IAN0;J3QLK1;J3QKT1 A0A0C4DGQ8 37 51 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 2 8.6165E-10 122.7 By MS/MS By matching 1 1 1.2865 1.137 22.762 2 Median 1.4489 1.3355 NaN 1 0 Median 1.1422 0.96795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13168000 5067100 8100400 12128000 4630900 7497400 1039300 436250 603050 0 0 0 0 0 0 0 0 0 0 0 0 25209 252 26556 134009;134010 134692;134693 134692 2 NAYMLVYR QTRKPKCGKGTHCSRNAYMLVYRLQTQEKP KGTHCSRNAYMLVYRLQTQEKPNTTVQVPA R N A Y R L 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 2 1 0 0 8 0 1028.5113 Q86UV5;E9PJ93 Q86UV5 412 419 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.00041411 154.11 By MS/MS By MS/MS 1 1 1.2279 1.1877 7.4732 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1388 1.2521 NaN 1 0 Median 1.3238 1.1265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17020000 7676200 9344200 0 0 0 0 0 0 14393000 6516800 7876300 2627300 1159400 1467900 0 0 0 0 0 0 25210 3281 26557 134011;134012 134694;134695 134694 2 NAYTMVLHK QRKNNSGLSFEELYRNAYTMVLHKHGEKLY FEELYRNAYTMVLHKHGEKLYTGLREVVTE R N A H K H 1 0 1 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 1 1 0 0 9 0 1075.5485 Q13618;H7C1L6;A0A087X1R9 Q13618 60 68 CUL3 Cullin-3 yes no 2 0.0023677 72.485 By MS/MS By MS/MS By matching 1 2 1 1.3396 1.2304 96.581 4 Median 1.1901 1.1354 NaN 1 1 Median 1.7068 1.5057 17.191 2 0 Median 0.20936 0.2044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7694200 3620500 4073600 3985900 1808800 2177200 2620600 1034000 1586500 1087700 777740 309940 0 0 0 0 0 0 0 0 0 25211 2831 26558 134013;134014;134015;134016 134696;134697 134697 2 NAYVWSQK WAPKSDRIVTCGADRNAYVWSQKDGVWKPT VTCGADRNAYVWSQKDGVWKPTLVILRINR R N A Q K D 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 8 0 994.48723 A0A1W2PNV4;E9PF58;Q92747 Q92747 75 82 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 2 0.0035902 86.953 By MS/MS 1 1.0712 0.91554 NaN 1 Median NaN NaN NaN 0 0 Median 1.0712 0.91554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6050100 2539100 3511000 0 0 0 6050100 2539100 3511000 0 0 0 0 0 0 0 0 0 0 0 0 25212 334;3552 26559 134017 134698 134698 1 NCAAYLK AKRQQQLTAMKVLQRNCAAYLKLRNWQWWR TAMKVLQRNCAAYLKLRNWQWWRLFTKVKP R N C L K L 2 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 7 0 838.40072 P35579;Q7Z406;P35580 P35579 815 821 MYH9;MYH14;MYH10 Myosin-9;Myosin-14;Myosin-10 no no 2 0.024355 55.604 By MS/MS 1 1.1933 1.0466 NaN 1 Median NaN NaN NaN 0 0 Median 1.1933 1.0466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1402200 649440 752720 0 0 0 1402200 649440 752720 0 0 0 0 0 0 0 0 0 0 0 0 25213 2244;2245;3242 26560 134018 134699 134699 1 NCGVLVHCLAGISR FFPEAISFIDEARGKNCGVLVHCLAGISRS KNCGVLVHCLAGISRSVTVTVAYLMQKLNL K N C S R S 1 1 1 0 2 0 0 2 1 1 2 0 0 0 0 1 0 0 0 2 0 0 14 0 1554.7759 F8VW29;Q16828 F8VW29 161 174 DUSP6 Dual specificity protein phosphatase 6 yes no 2 0.00064722 64.841 By MS/MS By MS/MS 4 2 0.93376 0.92761 10.851 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94102 0.97482 5.7322 4 0 Median 0.93376 0.80474 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130510000 71417000 59093000 0 0 0 0 0 0 117270000 64689000 52584000 13237000 6727700 6509400 0 0 0 0 0 0 25214 1069 26561 134019;134020;134021;134022;134023;134024 134700;134701;134702;134703 134701 4 NCIAQTSAVVK ESLMAAHASRDRVIKNCIAQTSAVVKNLRE RVIKNCIAQTSAVVKNLREEREKNLDDLTL K N C V K N 2 0 1 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 2 0 0 11 0 1189.6125 C9JQ41;H7C525;Q4VC31 C9JQ41 59 69 CCDC58 Coiled-coil domain-containing protein 58 yes no 2 0.00016774 80.231 By MS/MS 1 2.2806 1.8899 NaN 1 Median NaN NaN NaN 0 0 Median 2.2806 1.8899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3999600 1746400 2253200 0 0 0 3999600 1746400 2253200 0 0 0 0 0 0 0 0 0 0 0 0 25215 716 26562 134025 134704;134705 134704 2 NCIDITGVR RLTVMTDLEDKNEWKNCIDITGVRLPTGYY DKNEWKNCIDITGVRLPTGYYFGASAGTGD K N C V R L 0 1 1 1 1 0 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 9 0 1046.5179 Q12907;D6RBV2;D6RIU4;D6RDX1 Q12907 238 246 LMAN2 Vesicular integral-membrane protein VIP36 yes no 2 0.0061752 55.37 By MS/MS 1 1.2712 1.0573 NaN 1 Median NaN NaN NaN 0 0 Median 1.2712 1.0573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7161500 3180300 3981200 0 0 0 7161500 3180300 3981200 0 0 0 0 0 0 0 0 0 0 0 0 25216 2770 26563 134026 134706;134707 134707 2 NCISTVVHQGLIR VKVFLALAAKGPVLRNCISTVVHQGLIRIC LRNCISTVVHQGLIRICSKPVVLPKGPESE R N C I R I 0 1 1 0 1 1 0 1 1 2 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1495.7929 P78527 P78527 477 489 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 5.9218E-07 140.75 By MS/MS By MS/MS By MS/MS 3 2 2 1.3105 1.1197 14.881 7 Median NaN NaN NaN 0 0 Median 1.4182 1.1343 15.266 3 0 Plateau 0.92629 0.97063 8.757 2 0 Median 1.4218 1.2375 11.573 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105590000 48541000 57048000 0 0 0 43215000 17320000 25895000 59424000 30082000 29342000 2950800 1139000 1811800 0 0 0 0 0 0 25217 2647 26564 134027;134028;134029;134030;134031;134032;134033 134708;134709;134710;134711;134712;134713;134714;134715;134716;134717;134718 134710 11 NCIVLIDSTPYR NASNNELVRTKTLVKNCIVLIDSTPYRQWY LVKNCIVLIDSTPYRQWYESHYALPLGRKK K N C Y R Q 0 1 1 1 1 0 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1449.7286 Q5JR95;P62241 Q5JR95 79 90 RPS8 40S ribosomal protein S8 yes no 2 5.3523E-06 136.63 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1.0884 0.94926 54.751 5 Median 1.0234 0.97145 NaN 1 0 Median 1.0884 0.92056 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1633 0.94926 NaN 1 0 Median 1.1282 1.1149 NaN 1 0 Median 0.28575 0.29316 NaN 1 0 Median 30971000 15093000 15878000 15762000 8041800 7720000 11440000 5291200 6149000 0 0 0 258410 120540 137880 3151300 1360100 1791200 358970 279480 79493 25218 2573 26565 134034;134035;134036;134037;134038 134719;134720;134721 134719 3 NCLALADDKK WGADKCEELLEKTVKNCLALADDKKLKSIA EKTVKNCLALADDKKLKSIAFPSIGSGRNG K N C K K L 2 0 1 2 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1146.5703 O75367;B4DJC3 O75367 296 305 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.0029099 61.65 By MS/MS 2 1.0832 1.148 2.5056 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0832 1.148 2.5056 2 0 Median NaN NaN NaN 0 0 Median 7542700 3592500 3950200 0 0 0 0 0 0 0 0 0 0 0 0 7542700 3592500 3950200 0 0 0 25219 1662 26566 134039;134040 134722;134723;134724;134725 134722 4 NCLTNFHGMDLTR AFRKFKLITEDVQGKNCLTNFHGMDLTRDK GKNCLTNFHGMDLTRDKMCSMVKKWQTMIE K N C T R D 0 1 2 1 1 0 0 1 1 0 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1577.7079 P61247;E9PFI5;D6RG13;D6RAT0;H0Y8L7;D6RB09;D6RAS7;D6RED7 P61247 95 107 RPS3A 40S ribosomal protein S3a yes no 2;3 0.00042442 73.781 By MS/MS By MS/MS 2 2 1.1787 0.99227 11.401 4 Median 1.1855 1.1112 15.378 2 0 Median 1.1787 0.982 0.84382 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49844000 22683000 27161000 20863000 9332500 11530000 28981000 13351000 15631000 0 0 0 0 0 0 0 0 0 0 0 0 25220 2553 26567 134041;134042;134043;134044 134726;134727;134728;134729;134730 134726 5 NCMTDLLAK SAAMRERFDRFLHEKNCMTDLLAKLEAKTG RFLHEKNCMTDLLAKLEAKTGVNRSFIALG K N C A K L 1 0 1 1 1 0 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1064.4995 Q00765;B7Z332;B7Z510;H0Y8J8 Q00765 17 25 REEP5 Receptor expression-enhancing protein 5;Receptor expression-enhancing protein yes no 2 0.046568 31.934 By matching By MS/MS 1 1 1.4056 1.27 18.054 2 Median 1.5313 1.4429 NaN 1 0 Median 1.2903 1.1178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3149300 1399900 1749500 1532300 671830 860460 1617000 728030 889020 0 0 0 0 0 0 0 0 0 0 0 0 25221 2678 26568 134045;134046 134731;134732 134731 2 NCPHIVVGTPGR FGGLSIKKDEEVLKKNCPHIVVGTPGRILA LKKNCPHIVVGTPGRILALARNKSLNLKHI K N C G R I 0 1 1 0 1 0 0 2 1 1 0 0 0 0 2 0 1 0 0 2 0 0 12 0 1305.6612 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 164 175 DDX39B Spliceosome RNA helicase DDX39B yes no 3 0.00017246 63.473 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.97148 0.84049 18.053 4 Median NaN NaN NaN 0 0 Median 1.0241 0.88092 NaN 1 0 Median 0.7301 0.73599 NaN 1 0 Median 0.9216 0.80192 NaN 1 0 Median 1.114 1.1183 NaN 1 0 Median NaN NaN NaN 0 0 Median 12575000 6092300 6482300 0 0 0 2346900 1081900 1265000 2357100 1359700 997400 2337300 1099500 1237900 5533200 2551200 2982100 0 0 0 25222 2842 26569 134047;134048;134049;134050 134733;134734;134735;134736;134737 134735 5 NCSSFLIK ______________________________ LQWMVVRNCSSFLIKRNKQTYSTEPNNLKA R N C I K R 0 0 1 0 1 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 967.4797 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 12 19 RPL28 60S ribosomal protein L28 yes no 2 0.0082924 63.48 By MS/MS 1 1.1518 0.98703 NaN 1 Median NaN NaN NaN 0 0 Median 1.1518 0.98703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7829100 3977600 3851500 0 0 0 7829100 3977600 3851500 0 0 0 0 0 0 0 0 0 0 0 0 25223 1191 26570 134051 134738 134738 1 NCSSFLIKR ______________________________ QWMVVRNCSSFLIKRNKQTYSTEPNNLKAR R N C K R N 0 1 1 0 1 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 9 1 1123.5808 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 12 20 RPL28 60S ribosomal protein L28 yes no 2 0.02158 43.808 By MS/MS By MS/MS 1 1 1.3839 1.2938 19.288 2 Median 1.1394 1.1289 NaN 1 0 Median 1.6807 1.4829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3714800 1309600 2405200 1722900 586670 1136300 1991900 722910 1269000 0 0 0 0 0 0 0 0 0 0 0 0 25224 1191 26571 134052;134053 134739;134740 134740 2 NCTIVSPDAGGAK PAVLKWIRENISEWRNCTIVSPDAGGAKRV WRNCTIVSPDAGGAKRVTSIADRLNVDFAL R N C A K R 2 0 1 1 1 0 0 2 0 1 0 1 0 0 1 1 1 0 0 1 0 0 13 0 1288.6082 B1ALA9;P60891;A0A2R8Y7H4 B1ALA9 131 143 PRPS1 Ribose-phosphate pyrophosphokinase 1 yes no 2 0.00038358 74.841 By MS/MS 1 1.0336 0.87225 NaN 1 Median NaN NaN NaN 0 0 Median 1.0336 0.87225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1632800 524720 1108100 0 0 0 1632800 524720 1108100 0 0 0 0 0 0 0 0 0 0 0 0 25225 571 26572 134054 134741 134741 1 NCVILPHIGSATHR SPEPLPTNHPLLTLKNCVILPHIGSATHRT KNCVILPHIGSATHRTRNTMSLLAANNLLA K N C H R T 1 1 1 0 1 0 0 1 2 2 1 0 0 0 1 1 1 0 0 1 0 0 14 0 1573.8147 Q9UBQ7 Q9UBQ7 287 300 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 3 0.0010782 38.366 By MS/MS 1 1.4724 1.237 NaN 1 Median NaN NaN NaN 0 0 Median 1.4724 1.237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2334300 1223700 1110600 0 0 0 2334300 1223700 1110600 0 0 0 0 0 0 0 0 0 0 0 0 25226 4243 26573 134055 134742 134742 1 NDALSMIIK LTDEELKKEAKNEAKNDALSMIIKSLKNLA AKNEAKNDALSMIIKSLKNLASRVPGQEET K N D I K S 1 0 1 1 0 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 9 0 1003.5372 Q93008;O00507 Q93008 304 312 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.01772 41.448 By MS/MS By matching 1 2 1.1614 1.0194 8.1689 3 Median 0.92079 0.88732 NaN 1 0 Median 1.1664 1.0221 0.37428 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14282000 6681900 7599700 3496900 1782500 1714400 10785000 4899500 5885200 0 0 0 0 0 0 0 0 0 0 0 0 25227 3573 26574 134056;134057;134058 134743;134744 134743 2 NDANFDWQNVADFR DDSLTEEIDEKIGFRNDANFDWQNVADFRD RNDANFDWQNVADFRDAGGSLTEVKVEEEE R N D F R D 2 1 3 3 0 1 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 14 0 1710.7386 Q8NCY6;E9PLV2 Q8NCY6 119 132 MSANTD4 Myb/SANT-like DNA-binding domain-containing protein 4 yes no 2 0.013452 31.843 By MS/MS 1 0.84515 0.84191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84515 0.84191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1352000 742090 609890 0 0 0 0 0 0 1352000 742090 609890 0 0 0 0 0 0 0 0 0 25228 3421 26575 134059 134745 134745 1 NDAPTPGTSTTPGLR KSSTPGLKSNTPTPRNDAPTPGTSTTPGLR NDAPTPGTSTTPGLRSMPASALRTPISITS R N D L R S 1 1 1 1 0 0 0 2 0 0 1 0 0 0 3 1 4 0 0 0 0 0 15 0 1483.7267 F5H7D6;H0YNT2;A0A0D9SES8;H0YKT5;H0YKN8;H0YL70;Q04726;H0YKH0;H0YLW9;H0YLI3 F5H7D6 268 282 TLE3 Transducin-like enhancer protein 3 yes no 2 3.976E-05 84.289 By MS/MS By MS/MS By MS/MS 1 1 1 0.71251 0.6192 58.577 3 Median 0.55081 0.5378 NaN 1 0 Median 0.71251 0.6192 NaN 1 0 Median 1.4797 1.58 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7070400 3929200 3141200 2900500 1794700 1105800 2089200 1122500 966760 2080700 1012000 1068700 0 0 0 0 0 0 0 0 0 25229 261 26576 134060;134061;134062 134746;134747;134748;134749 134747 4 NDASEVVLAGER SSVPSEDEWYCPECRNDASEVVLAGERLRE ECRNDASEVVLAGERLRESKKKAKMASATS R N D E R L 2 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1258.6153 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 378 389 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 4.3296E-15 185.96 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 1 0.72466 0.6753 29.587 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61488 0.65045 NaN 1 0 Median 0.78351 0.6753 NaN 1 0 Median 0.69068 0.69378 39.389 4 2 Median 0.87109 0.74797 NaN 1 1 Median 100070000 56288000 43782000 0 0 0 0 0 0 26661000 15715000 10946000 11770000 6042500 5727100 52388000 29844000 22544000 9251100 4686100 4564900 25230 20 26577 134063;134064;134065;134066;134067;134068;134069 134750;134751;134752;134753;134754;134755;134756;134757 134753 8 NDDDEEEAAR GRRSLAALSQIAYQRNDDDEEEAARERRRR IAYQRNDDDEEEAARERRRRARQERLRQKQ R N D A R E 2 1 1 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 1162.4374 E9PGZ1;E7EX44;Q05682;C9J813;C9JEK3;C9JE79;F8WE61 E9PGZ1 24 33 CALD1 Caldesmon yes no 2 0.017044 38.086 By matching By matching By MS/MS By matching 1 1 1 2 0.83316 0.72845 11.743 5 Median 0.84505 0.84459 NaN 1 0 Median 0.81429 0.72845 NaN 1 0 Median 0.84054 0.87036 NaN 1 0 Median 0.80565 0.69016 7.2547 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1672800 843880 828900 99355 42054 57301 305280 169070 136210 874140 433720 440410 394010 199030 194980 0 0 0 0 0 0 25231 928 26578 134070;134071;134072;134073;134074 134758 134758 1 NDDSWLASQHSLVSQLR DLQFQAIKIISIIVKNDDSWLASQHSLVSQ DSWLASQHSLVSQLRRVWVSENFQERHRKE K N D L R R 1 1 1 2 0 2 0 0 1 0 3 0 0 0 0 4 0 1 0 1 0 0 17 0 1954.9497 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1633 1649 TRRAP Transformation/transcription domain-associated protein yes no 3 6.2049E-06 70.784 By matching By MS/MS 1 2 1.091 1.0382 32.536 3 Median NaN NaN NaN 0 0 Median 1.091 0.94499 NaN 1 0 Median 1.2379 1.3402 36.103 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13239000 6477100 6762100 0 0 0 643550 307810 335740 12596000 6169300 6426300 0 0 0 0 0 0 0 0 0 25232 991 26579 134075;134076;134077 134759;134760 134760 2 NDEELNKLLGK KKTRIIPRHLQLAIRNDEELNKLLGKVTIA LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R N D G K V 0 0 2 1 0 0 2 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 11 1 1271.6721 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9 A0A0U1RR32 90 100 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A yes no 2;3 3.9471E-09 174.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 20 8 0.93395 1.0005 29.627 34 Median 1.2441 1.2409 8.1194 2 0 Median 1.4265 1.2614 4.1275 2 1 Median 1.0102 1.0155 30.771 3 0 Plateau NaN NaN NaN 0 0 Median 0.91216 0.97932 32.924 20 2 Median 1.3461 1.1354 24.645 7 0 Median 5153100000 2504600000 2648500000 33283000 14386000 18897000 8833500 3414700 5418800 45268000 21621000 23647000 0 0 0 4351100000 2163800000 2187300000 714590000 301430000 413170000 25233 308 26580 134078;134079;134080;134081;134082;134083;134084;134085;134086;134087;134088;134089;134090;134091;134092;134093;134094;134095;134096;134097;134098;134099;134100;134101;134102;134103;134104;134105;134106;134107;134108;134109;134110;134111;134112 134761;134762;134763;134764;134765;134766;134767;134768;134769;134770;134771;134772;134773;134774;134775;134776;134777;134778;134779;134780;134781;134782;134783;134784;134785;134786;134787;134788;134789;134790;134791;134792;134793;134794;134795;134796;134797;134798;134799;134800;134801;134802;134803;134804;134805;134806;134807;134808;134809;134810;134811;134812;134813;134814;134815;134816;134817;134818;134819 134787 59 NDEELNKLLGR KKTRIIPRHLQLAIRNDEELNKLLGRVTIA LAIRNDEELNKLLGRVTIAQGGVLPNIQAV R N D G R V 0 1 2 1 0 0 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1299.6783 Q93077;Q7L7L0;P04908 Q93077 90 100 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 2;3 5.9727E-10 180.44 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 10 4 0.85528 0.95918 27.953 18 Median 0.66003 0.6548 7.2085 2 0 Median NaN NaN NaN 0 0 Median 0.90832 0.94542 10.089 2 0 Median NaN NaN NaN 0 0 Median 0.82952 0.93767 30.163 10 1 Median 1.3772 1.1001 11.623 4 0 Median 901920000 459450000 442470000 4016000 2258600 1757400 0 0 0 10839000 5505700 5333700 0 0 0 855070000 438140000 416930000 31997000 13549000 18447000 25234 1856 26581 134113;134114;134115;134116;134117;134118;134119;134120;134121;134122;134123;134124;134125;134126;134127;134128;134129;134130 134820;134821;134822;134823;134824;134825;134826;134827;134828;134829;134830;134831;134832;134833;134834;134835;134836;134837;134838;134839 134835 19 NDELTSLAEETR HCEELEKQLIEFQHRNDELTSLAEETRALK QHRNDELTSLAEETRALKDEIDVLRATSDK R N D T R A 1 1 1 1 0 0 3 0 0 0 2 0 0 0 0 1 2 0 0 0 0 0 12 0 1376.642 Q9UJC3 Q9UJC3 289 300 HOOK1 Protein Hook homolog 1 yes yes 2 0.0023826 76.143 By MS/MS 1 1.115 1.0653 NaN 1 Median 1.115 1.0653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5432700 2677800 2754900 5432700 2677800 2754900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25235 4295 26582 134131 134840 134840 1 NDFEIVLPENAEK REHLRLGLLGLPAPKNDFEIVLPENAEKEL PKNDFEIVLPENAEKELEEREIDDTYIEDA K N D E K E 1 0 2 1 0 0 3 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 13 0 1516.7409 Q99459 Q99459 488 500 CDC5L Cell division cycle 5-like protein yes yes 2 0.0012561 56.783 By MS/MS By matching 2 2 0.92808 0.83764 25.111 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97882 1.0211 38.005 2 0 Median 0.92808 0.83764 7.424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20332000 10851000 9480900 0 0 0 0 0 0 19352000 10246000 9106500 980360 605910 374440 0 0 0 0 0 0 25236 3745 26583 134132;134133;134134;134135 134841;134842;134843 134843 3 NDFTEEEEAQVR KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN NIKNDFTEEEEAQVRKENQWCEEK______ K N D V R K 1 1 1 1 0 1 4 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1465.6321 E5RJR5;P63208 E5RJR5 143 154 SKP1 S-phase kinase-associated protein 1 yes no 2 1.6158E-09 174.41 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1 2 1.0093 0.86384 13.196 8 Median 0.95495 0.9159 NaN 1 0 Median 1.1422 0.94679 NaN 1 0 Median 0.87623 0.86384 3.6155 2 0 Median 1.0032 0.82826 NaN 1 0 Median 1.1173 1.1819 NaN 1 0 Median 1.0399 0.79682 6.428 2 0 Median 54812000 27236000 27576000 23254000 12336000 10918000 10474000 5062800 5411600 9547100 4738300 4808900 974330 455510 518820 2296100 998600 1297500 8266700 3645400 4621400 25237 853 26584 134136;134137;134138;134139;134140;134141;134142;134143 134844;134845;134846;134847;134848;134849;134850;134851;134852;134853;134854;134855;134856;134857 134853 14 NDFTEEEEAQVRK KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN IKNDFTEEEEAQVRKENQWCEEK_______ K N D R K E 1 1 1 1 0 1 4 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 13 1 1593.7271 E5RJR5;P63208 E5RJR5 143 155 SKP1 S-phase kinase-associated protein 1 yes no 3 0.000718 45.79 By MS/MS By MS/MS 1 1 0.89419 0.83669 4.0899 2 Median 0.81911 0.81284 NaN 1 0 Median 0.97614 0.86124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6472300 3057100 3415100 4255600 2007200 2248400 2216700 1050000 1166800 0 0 0 0 0 0 0 0 0 0 0 0 25238 853 26585 134144;134145 134858;134859;134860 134860 3 NDGAAILAAVSSIAQK AKKPMVVLGSSALQRNDGAAILAAVSSIAQ DGAAILAAVSSIAQKIRMTSGVTGDWKVMN R N D Q K I 5 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 16 0 1527.8257 P28331;B4DJ81 P28331 484 499 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 3.4925E-09 122.45 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 0.89608 0.81969 44.529 6 Median 0.84453 0.80484 NaN 1 0 Median 1.5614 1.3567 36.327 2 1 Median 0.75577 0.80251 NaN 1 0 Median 0.95077 0.83481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49919 0.44469 NaN 1 0 Median 14635000 6463800 8171200 4055200 2167500 1887700 8216500 3067600 5148900 2156700 1129200 1027500 88452 43173 45279 0 0 0 118050 56273 61780 25239 2165 26586 134146;134147;134148;134149;134150;134151 134861;134862;134863;134864;134865;134866;134867 134866 7 NDGVLLLQALTR SRLMDLLADSREVIRNDGVLLLQALTRSNG VIRNDGVLLLQALTRSNGAIQKIVAFENAF R N D T R S 1 1 1 1 0 1 0 1 0 0 4 0 0 0 0 0 1 0 0 1 0 0 12 0 1311.751 O60763 O60763 184 195 USO1 General vesicular transport factor p115 yes yes 2 3.7382E-06 107.06 By MS/MS By MS/MS By matching 1 1 1 1.3206 1.1046 23.001 3 Median 1.0496 1.0198 NaN 1 0 Median 1.3206 1.1046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.762 1.5713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13717000 6157200 7560300 3340700 1655200 1685500 10312000 4480900 5831500 0 0 0 64441 21124 43317 0 0 0 0 0 0 25240 1630 26587 134152;134153;134154 134868;134869 134869 2 NDHDDDEDEEVISK DVMVRCLKLLKEFKRNDHDDDEDEEVISKT RNDHDDDEDEEVISKTVPPVDIVFERDMLT R N D S K T 0 0 1 5 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 14 0 1658.6544 Q12789 Q12789 342 355 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2;3 0.00012311 69.92 By MS/MS By MS/MS 1 3 0.82115 0.91254 18.529 4 Median NaN NaN NaN 0 0 Median 1.2546 1.096 NaN 1 0 Median 0.81117 0.89891 15.423 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14465000 7719800 6745400 0 0 0 1171300 533210 638040 13294000 7186600 6107300 0 0 0 0 0 0 0 0 0 25241 2758 26588 134155;134156;134157;134158 134870;134871;134872;134873;134874 134871 5 NDHLTSTTSSPGVIVPESSENK RENELSAGLSKRKHRNDHLTSTTSSPGVIV TSSPGVIVPESSENKNLGGVTQESFDLMIK R N D N K N 0 0 2 1 0 0 2 1 1 1 1 1 0 0 2 5 3 0 0 2 0 0 22 0 2298.0975 H7C608;E2QRF9;O75496 H7C608 55 76 GMNN Geminin yes no 3 0.026533 13.321 By MS/MS 1 0.91584 0.78081 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91584 0.78081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 887570 409510 478050 0 0 0 0 0 0 0 0 0 887570 409510 478050 0 0 0 0 0 0 25242 832 26589 134159 134875 134875 1 NDHQEDFWK RNAELRLRWGQIVLKNDHQEDFWKVKEFLH GQIVLKNDHQEDFWKVKEFLHNQGKQKYTL K N D W K V 0 0 1 2 0 1 1 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1217.5102 Q9H4A4;A6NKB8 Q9H4A4 582 590 RNPEP Aminopeptidase B yes no 2;3 0.00063785 107.9 By MS/MS By matching 2 2 0.95138 0.86312 4.5729 4 Median 0.86359 0.83057 6.9251 2 0 Median 0.99797 0.86312 0.091193 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10786000 5233500 5552700 6930900 3242700 3688200 3855300 1990800 1864500 0 0 0 0 0 0 0 0 0 0 0 0 25243 3964 26590 134160;134161;134162;134163 134876;134877 134876 2 NDIAINELMK ERIVGWYHTGPKLHKNDIAINELMKRYCPN PKLHKNDIAINELMKRYCPNSVLVIIDVKP K N D M K R 1 0 2 1 0 0 1 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 10 0 1159.5907 P51665;H3BNT7;H3BTM8 P51665 104 113 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2 0.0003951 88.267 By MS/MS By matching By matching 2 1 1 1.163 1.0424 10.072 4 Median 1.0478 0.99171 1.7969 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3096 1.0819 NaN 1 0 Median 1.2432 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median 25177000 11065000 14112000 23054000 10061000 12993000 0 0 0 0 0 0 1137300 482170 655180 985160 521520 463640 0 0 0 25244 2440 26591 134164;134165;134166;134167 134878;134879 134879 2 NDIAMAITK AWIHTEDNKRRTLQRNDIAMAITKFDQFDF RRTLQRNDIAMAITKFDQFDFLIDIVPRDE R N D T K F 2 0 1 1 0 0 0 0 0 2 0 1 1 0 0 0 1 0 0 0 0 0 9 0 975.50592 Q5T6K5;Q5T6K7;E9PI99;Q13952;E9PL11 Q5T6K5 99 107 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.0020804 74.464 By MS/MS By MS/MS 1 1 1.0408 0.97435 10.654 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0169 1.0506 NaN 1 0 Median 1.0654 0.90364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18803000 9083900 9719200 0 0 0 0 0 0 14507000 6982500 7525000 4295700 2101400 2194300 0 0 0 0 0 0 25245 3091 26592 134168;134169 134880;134881;134882 134881 3 NDIASHPPVEGSYAPR VETGTQLEKLMENMRNDIASHPPVEGSYAP DIASHPPVEGSYAPRRGEFCIAKFVDGEWY R N D P R R 2 1 1 1 0 0 1 1 1 1 0 0 0 0 3 2 0 0 1 1 0 0 16 0 1708.8169 Q7KZF4;H7C597 Q7KZF4 716 731 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 2.9547E-10 107.65 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 0.82157 0.71469 21.296 8 Median 0.64614 0.62169 NaN 1 0 Median 0.8788 0.72929 14.336 3 0 Median 0.69217 0.73508 6.8372 2 0 Median 1.0659 0.90862 40.852 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 132350000 74596000 57755000 23699000 15009000 8689300 59809000 31918000 27890000 25536000 15048000 10488000 23307000 12620000 10687000 0 0 0 0 0 0 25246 3214 26593 134170;134171;134172;134173;134174;134175;134176;134177;134178 134883;134884;134885;134886;134887;134888;134889;134890;134891;134892;134893;134894 134891 12 NDIHTLLK WLEYRVTQVDGHSSKNDIHTLLKDLNSYLE VDGHSSKNDIHTLLKDLNSYLEDKVYLTGY K N D L K D 0 0 1 1 0 0 0 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 952.53418 O43324;D6RBD7;C9J1V9;H0YAL7;H0YAH9 O43324 89 96 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2 0.0050681 77.923 By MS/MS By MS/MS 1 1 1.1672 1.0502 3.7702 2 Median 1.1414 1.0786 NaN 1 0 Median 1.1935 1.0226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17163000 7796000 9367400 8973000 4227000 4746000 8190500 3569000 4621500 0 0 0 0 0 0 0 0 0 0 0 0 25247 1566 26594 134179;134180 134895;134896;134897 134896 3 NDITPLHVASK TLLLNRAAAVDFTARNDITPLHVASKRGNA FTARNDITPLHVASKRGNANMVKLLLDRGA R N D S K R 1 0 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1193.6404 Q12955;D6RHY3;A0A087X0B4 Q12955 267 277 ANK3 Ankyrin-3 yes no 2 0.018418 35.652 By MS/MS 1 0.69282 0.77172 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69282 0.77172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2308100 1318700 989430 0 0 0 0 0 0 2308100 1318700 989430 0 0 0 0 0 0 0 0 0 25248 2773 26595 134181 134898;134899 134899 2 NDIVNMLVGNK KLDNWLNELETYCTRNDIVNMLVGNKIDKE YCTRNDIVNMLVGNKIDKENREVDRNEGLK R N D N K I 0 0 3 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 2 0 0 11 0 1215.6282 Q9NP72;A0A087X163;Q5W0J0;H0Y6T8 Q9NP72 113 123 RAB18 Ras-related protein Rab-18 yes no 2 0.0078377 60.019 By MS/MS 1 0.72648 0.67528 NaN 1 Median 0.72648 0.67528 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18233000 9760500 8472200 18233000 9760500 8472200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25249 4041 26596 134182 134900 134900 1 NDKDKPLPPLLAR ERSEAPRRPSRKGLRNDKDKPLPPLLARVG LRNDKDKPLPPLLARVGGNIEVLGFNARQR R N D A R V 1 1 1 2 0 0 0 0 0 0 3 2 0 0 3 0 0 0 0 0 0 0 13 2 1475.846 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1394 1406 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 4.9103E-05 83.214 By MS/MS By MS/MS By matching By matching 1 4 1 1 0.62353 0.7525 22.87 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58111 0.76775 NaN 1 0 Median 0.72562 0.792 22.446 4 0 Median 0.4186 0.4933 NaN 1 0 Median 0.62353 0.63971 NaN 1 0 Median 88097000 52175000 35923000 0 0 0 0 0 0 60936000 37135000 23801000 19194000 10264000 8930000 6101100 3589400 2511700 1866000 1186100 679950 25250 246 26597 134183;134184;134185;134186;134187;134188;134189 134901;134902;134903;134904;134905;134906;134907;134908;134909 134902 9 NDKSEEEQSSSSVK EKIEKEQSKQAVEMKNDKSEEEQSSSSVKK KNDKSEEEQSSSSVKKDETNVKMESEGGAD K N D V K K 0 0 1 1 0 1 3 0 0 0 0 2 0 0 0 5 0 0 0 1 0 0 14 1 1552.6853 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V2D6;G3V5V7 B2R5W2 217 230 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 0.016316 24.191 By MS/MS 1 0.93158 0.98086 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93158 0.98086 NaN 1 0 Median NaN NaN NaN 0 0 Median 1643300 1008700 634610 0 0 0 0 0 0 0 0 0 0 0 0 1643300 1008700 634610 0 0 0 25251 582 26598 134190 134910;134911;134912;134913;134914 134911 5 NDKYAGEEGMIEDMK ILEPMDLKIIEHNIRNDKYAGEEGMIEDMK NDKYAGEEGMIEDMKLMFRNARHYNEEGSQ R N D M K L 1 0 1 2 0 0 3 2 0 1 0 2 2 0 0 0 0 0 1 0 0 0 15 1 1728.7335 Q86U86;E7EVG2;H0Y5B5 Q86U86 577 591 PBRM1 Protein polybromo-1 yes no 3 0.0010792 37.092 By MS/MS 1 0.93148 1.0773 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93148 1.0773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8878100 4659100 4219100 0 0 0 0 0 0 8878100 4659100 4219100 0 0 0 0 0 0 0 0 0 25252 3273 26599 134191 134915 134915 1 NDLAVVDVR SAPELKTGISDVFAKNDLAVVDVRIGMTRK SDVFAKNDLAVVDVRIGMTRKFGYVDFESA K N D V R I 1 1 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 999.53491 P19338 P19338 334 342 NCL Nucleolin yes yes 2 6.6422E-05 124.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 4 5 4 4 1.1751 1.0823 47.873 27 Median 1.0932 1.041 5.7782 4 0 Median 1.1454 0.9693 32.309 6 0 Median 1.1427 1.1742 23.647 4 0 Median 1.2559 1.0823 12.508 5 1 Median 1.2384 1.2239 124.15 4 2 Median 1.361 1.135 12.175 4 0 Median 779660000 355830000 423830000 204800000 92709000 112090000 86938000 37860000 49077000 133010000 60089000 72921000 61029000 26406000 34622000 228420000 111110000 117300000 65468000 27651000 37817000 25253 2063 26600 134192;134193;134194;134195;134196;134197;134198;134199;134200;134201;134202;134203;134204;134205;134206;134207;134208;134209;134210;134211;134212;134213;134214;134215;134216;134217;134218 134916;134917;134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928;134929;134930;134931;134932;134933;134934;134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946;134947;134948;134949;134950;134951;134952;134953;134954;134955;134956;134957;134958;134959;134960;134961;134962 134955 47 NDLDDPER FGDQPDIRCPIPRRRNDLDDPERGMIFVCS CPIPRRRNDLDDPERGMIFVCSATHKTKSM R N D E R G 0 1 1 3 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 8 0 972.41485 Q15393 Q15393 276 283 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.014044 51.854 By MS/MS By matching By MS/MS 1 1 2 0.91789 0.80329 19.476 4 Median NaN NaN NaN 0 0 Median 0.92539 0.77875 NaN 1 0 Median 0.74298 0.8286 NaN 1 0 Median 1.0999 0.9514 28.85 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4268700 2204200 2064500 0 0 0 1698000 836390 861640 574960 387340 187630 1995700 980470 1015300 0 0 0 0 0 0 25254 2946 26601 134219;134220;134221;134222 134963;134964;134965;134966;134967 134964 5 NDLSPASSGNAVYDFFIGR VLSVYLYMRSLKAPRNDLSPASSGNAVYDF PASSGNAVYDFFIGRELNPRIGTFDLKYFC R N D G R E 2 1 2 2 0 0 0 2 0 1 1 0 0 2 1 3 0 0 1 1 0 0 19 0 2028.9541 Q14739;A0A494C1L1 Q14739 354 372 LBR Lamin-B receptor yes no 2;3 1.0736E-17 137.8 By MS/MS By MS/MS By MS/MS 6 2 5 0.88239 0.91431 15.56 13 Median 0.92395 0.92106 19.174 6 0 Median 1.0939 0.94742 1.0942 2 0 Median 0.73545 0.79418 8.1544 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26229000 13924000 12305000 9571400 4886500 4684900 1646400 767430 878960 15012000 8270100 6741600 0 0 0 0 0 0 0 0 0 25255 2897 26602 134223;134224;134225;134226;134227;134228;134229;134230;134231;134232;134233;134234;134235 134968;134969;134970;134971;134972;134973;134974;134975;134976;134977;134978 134976 11 NDLSPTTVMSEGAR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN RNDLSPTTVMSEGARNIVAAMKAHGVDKVV R N D A R N 1 1 1 1 0 0 1 1 0 0 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1476.6879 P30043;M0R192;A0A2R8Y7Y9;M0QZL1 P30043 79 92 BLVRB Flavin reductase (NADPH) yes no 2 1.9819E-07 158.41 By MS/MS By MS/MS By MS/MS 2 1 1 0.95569 0.9139 19.354 4 Median 0.81242 0.76971 3.084 2 0 Median 1.2854 1.087 NaN 1 0 Median 1.1049 1.0617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96156000 53458000 42698000 78120000 45068000 33052000 7838200 3623000 4215200 10197000 4766600 5430800 0 0 0 0 0 0 0 0 0 25256 2180 26603;26604 134236;134237;134238;134239 134979;134980;134981;134982;134983;134984;134985;134986;134987 134980 923 9 NDLTEVER TLVPLVDCSSVLQERNDLTEVERELCSATA SSVLQERNDLTEVERELCSATAEFEDFVLQ R N D E R E 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 974.46689 Q14997;F8WBH5 Q14997 527 534 PSME4 Proteasome activator complex subunit 4 yes no 2 0.016427 49.418 By MS/MS 1 1.253 1.0626 NaN 1 Median NaN NaN NaN 0 0 Median 1.253 1.0626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 915810 383390 532420 0 0 0 915810 383390 532420 0 0 0 0 0 0 0 0 0 0 0 0 25257 2906 26605 134240 134988;134989 134988 2 NDLVEALKR SVQTFADKSKQEALKNDLVEALKRKQQC__ KQEALKNDLVEALKRKQQC___________ K N D K R K 1 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1056.5928 B1AK87;B1AK88 B1AK87 248 256 CAPZB yes no 2 0.00061368 128.69 By MS/MS By MS/MS By MS/MS 1 1 1 1.1519 1.087 3.1971 3 Median 1.0558 1.06 NaN 1 0 Median 1.2599 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1519 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19673000 9212900 10460000 11156000 5152300 6004200 5796100 2745200 3050900 0 0 0 2720500 1315400 1405100 0 0 0 0 0 0 25258 566 26606 134241;134242;134243 134990;134991;134992;134993 134990 4 NDMTYNYANR ASAEVAQQGTMWQGRNDMTYNYANRQSTGS MWQGRNDMTYNYANRQSTGSAPQGPAYHGV R N D N R Q 1 1 3 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 10 0 1260.5193 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1502 1511 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.00039696 78.149 By MS/MS 1 0.95991 1.0641 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95991 1.0641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3381800 1852300 1529500 0 0 0 0 0 0 3381800 1852300 1529500 0 0 0 0 0 0 0 0 0 25259 1480 26607 134244 134994 134994 1 NDNDSWDYTKPYLGR RNGIQAMPTRLNVIRNDNDSWDYTKPYLGR NDNDSWDYTKPYLGRRDRGKGRQRQAILGE R N D G R R 0 1 2 3 0 0 0 1 0 0 1 1 0 0 1 1 1 1 2 0 0 0 15 1 1842.8173 B7WPG3;C9IYN3;D6W592;Q8WVV9;H7BXH8 B7WPG3 218 232 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.00011197 56.648 By matching By MS/MS By matching 1 1 2 0.72378 0.76114 17.231 4 Median 0.66739 0.6764 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78493 0.87889 NaN 1 0 Median 0.78625 0.72931 22.735 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9645800 5150000 4495800 2112800 1217400 895410 0 0 0 7282900 3818900 3464000 250120 113740 136380 0 0 0 0 0 0 25260 629 26608 134245;134246;134247;134248 134995 134995 1 NDNDTFTVK VVGPAEADIDFDIIRNDNDTFTVKYTPRGA DFDIIRNDNDTFTVKYTPRGAGSYTIMVLF R N D V K Y 0 0 2 2 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 9 0 1052.4775 P21333;Q60FE5;A0A087WWY3;Q14315 P21333 829 837 FLNA;FLNC Filamin-A;Filamin-C no no 2 0.00057143 113.26 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.3012 1.1278 13.981 7 Median 1.1736 1.1398 13.345 2 0 Median 1.3263 1.1278 10.516 3 0 Median NaN NaN NaN 0 0 Median 0.96639 0.93029 NaN 1 0 Median 1.3012 1.3668 NaN 1 0 Median NaN NaN NaN 0 0 Median 55356000 26526000 28830000 5074400 2250200 2824200 46829000 22520000 24309000 0 0 0 2149100 1133900 1015200 1304100 622180 681910 0 0 0 25261 2088;3120;2871 26609 134249;134250;134251;134252;134253;134254;134255 134996;134997;134998;134999;135000;135001 134998 6 NDPEITINVPQSSK ELAKTPQKSVSFSLKNDPEITINVPQSSKG KNDPEITINVPQSSKGHSASDKVQPKNNDK K N D S K G 0 0 2 1 0 1 1 0 0 2 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1540.7733 Q13416 Q13416 127 140 ORC2 Origin recognition complex subunit 2 yes yes 2 7.7293E-05 83.617 By MS/MS By matching 1 1 0.69212 0.64464 13.552 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7024 0.70947 NaN 1 0 Median 0.68199 0.58573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13262000 7521200 5740800 0 0 0 0 0 0 12254000 6947500 5306100 1008400 573730 434640 0 0 0 0 0 0 25262 2813 26610 134256;134257 135002;135003 135003 2 NDPQSITADDLHQLLVVAR EITKAVEDDFVEMRKNDPQSITADDLHQLL SITADDLHQLLVVARCLSLSAGQTTLSRER K N D A R C 2 1 1 3 0 2 0 0 1 1 3 0 0 0 1 1 1 0 0 2 0 0 19 0 2104.0913 Q9BTE3 Q9BTE3 583 601 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 3 0.010417 30.684 By MS/MS 1 0.96588 0.83421 NaN 1 Median NaN NaN NaN 0 0 Median 0.96588 0.83421 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1670500 631180 1039300 0 0 0 1670500 631180 1039300 0 0 0 0 0 0 0 0 0 0 0 0 25263 3825 26611 134258 135004 135004 1 NDQDTWDYTNPNLSGQGDPGSNPNK LKIEYAKPTRLNVFKNDQDTWDYTNPNLSG PNLSGQGDPGSNPNKRQRQPPLLGDHPAEY K N D N K R 0 0 5 4 0 2 0 3 0 0 1 1 0 0 3 2 2 1 1 0 0 0 25 0 2733.1539 A0A3B3ITJ4;M0QXS5;P14866 P14866 278 302 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 3 6.3779E-13 57.922 By MS/MS By MS/MS By matching 1 1 1 0.56557 0.54893 16.179 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56557 0.54893 NaN 1 0 Median 0.75372 0.64334 NaN 1 0 Median 0.48604 0.46551 NaN 1 0 Median NaN NaN NaN 0 0 Median 18283000 11143000 7140600 0 0 0 0 0 0 14391000 8924900 5465900 1771600 948840 822770 2120900 1269000 851870 0 0 0 25264 2011;436 26612 134259;134260;134261 135005;135006;135007;135008 135005 4 NDQDTWDYTNPNLSGQGDPGSNPNKR LKIEYAKPTRLNVFKNDQDTWDYTNPNLSG NLSGQGDPGSNPNKRQRQPPLLGDHPAEYG K N D K R Q 0 1 5 4 0 2 0 3 0 0 1 1 0 0 3 2 2 1 1 0 0 0 26 1 2889.255 A0A3B3ITJ4;M0QXS5;P14866 P14866 278 303 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 3 5.7364E-52 137.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 8 4 4 0.65751 0.61912 91.784 23 Median 1.1374 1.1415 NaN 1 0 Median 0.68898 0.62939 NaN 1 0 Median 0.52021 0.53686 188.56 5 0 Median 0.71858 0.66654 9.4823 8 0 Median 0.5303 0.56766 14.002 4 1 Median 0.68007 0.60318 17.575 4 0 Median 464200000 353010000 111180000 8434600 4040200 4394400 6652500 3706800 2945800 226930000 206600000 20329000 81245000 43052000 38193000 132000000 90714000 41284000 8938800 4902900 4035800 25265 2011;436 26613 134262;134263;134264;134265;134266;134267;134268;134269;134270;134271;134272;134273;134274;134275;134276;134277;134278;134279;134280;134281;134282;134283;134284 135009;135010;135011;135012;135013;135014;135015;135016;135017;135018;135019;135020;135021;135022;135023;135024;135025;135026;135027;135028;135029;135030;135031;135032;135033;135034;135035;135036;135037;135038;135039 135020 31 NDSHVLIELHK CLEGMKVAANAVDPKNDSHVLIELHKSGFA VDPKNDSHVLIELHKSGFARPGDVEFEDFS K N D H K S 0 0 1 1 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1303.6884 M0R0F9;Q15642;M0R2H7;W4VSQ9 M0R0F9 155 165 TRIP10 Cdc42-interacting protein 4 yes no 3 0.0049991 35.645 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.78503 0.7248 26.078 4 Median 0.67433 0.64957 NaN 1 0 Median 0.61764 0.53344 NaN 1 0 Median 0.91391 0.97191 NaN 1 0 Median 0.94134 0.80876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9424500 5423300 4001200 2695500 1599500 1096000 2134400 1361700 772710 3615800 1947000 1668800 978830 515210 463630 0 0 0 0 0 0 25266 1426 26614 134285;134286;134287;134288 135040;135041;135042;135043;135044;135045;135046 135044 7 NDSQHLFIEPR SGDEKGVVFCYWFNRNDSQHLFIEPRTIFC WFNRNDSQHLFIEPRTIFCLTCSPHHEDLV R N D P R T 0 1 1 1 0 1 1 0 1 1 1 0 0 1 1 1 0 0 0 0 0 0 11 0 1354.663 Q8TEQ6 Q8TEQ6 142 152 GEMIN5 Gem-associated protein 5 yes yes 2;3 0.010615 49.189 By MS/MS By MS/MS 1 2 0.67075 0.56638 31.605 3 Median 0.51582 0.48566 NaN 1 1 Median 0.82214 0.71074 32.11 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11237000 6852700 4383900 8265100 5181700 3083400 2971500 1671000 1300500 0 0 0 0 0 0 0 0 0 0 0 0 25267 3478 26615 134289;134290;134291 135047;135048;135049 135049 3 NDSVVAGGGAIEMELSK RSLHDAIMIVRRAIKNDSVVAGGGAIEMEL SVVAGGGAIEMELSKYLRDYSRTIPGKQQL K N D S K Y 2 0 1 1 0 0 2 3 0 1 1 1 1 0 0 2 0 0 0 2 0 0 17 0 1675.8087 Q99832 Q99832 402 418 CCT7 T-complex protein 1 subunit eta yes yes 2 4.0032E-08 97.551 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.0842 0.93054 12.438 5 Median 1.2597 1.1915 NaN 1 0 Median 1.0544 0.90843 2.6801 2 0 Median 1.1026 1.0861 NaN 1 0 Median 1.0842 0.93054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21838000 9573300 12264000 8741300 3131400 5609800 4724600 2233600 2491000 7951200 4031300 3919900 420710 176980 243740 0 0 0 0 0 0 25268 3771 26616 134292;134293;134294;134295;134296 135050;135051;135052;135053 135050 4 NDTGFQEGYPYPYPHTLYLLDK SPIIDLHECNIYDVKNDTGFQEGYPYPYPH GYPYPYPHTLYLLDKANLRPHRLQPDQLRA K N D D K A 0 0 1 2 0 1 1 2 1 0 3 1 0 1 3 0 2 0 4 0 0 0 22 0 2630.2329 Q9BZE1;S4R369;A6NHR2;H0Y4J2 Q9BZE1 275 296 MRPL37 39S ribosomal protein L37, mitochondrial yes no 3 0.029402 12.802 By matching By MS/MS By matching 1 1 1 0.68684 0.72779 27.238 3 Median 0.65354 0.63226 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68684 0.72779 NaN 1 0 Median 1.2413 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6438100 3540400 2897800 1425500 772700 652780 0 0 0 4879500 2709600 2170000 133130 58108 75026 0 0 0 0 0 0 25269 3897 26617 134297;134298;134299 135054 135054 1 NDTKEDVFVHQTAIK VKWFNVRNGYGFINRNDTKEDVFVHQTAIK NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE R N D I K K 1 0 1 2 0 1 1 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 15 1 1743.8792 P16989;Q9Y2T7;P67809 P67809 78 92 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2;3;4 1.0559E-09 116.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 3 4 6 1.0429 0.99395 20.445 28 Median 1.0695 0.99975 6.563 5 0 Median 1.041 0.94108 24.586 5 0 Median 1.0316 1.0753 18.401 5 0 Median 1.0998 1.0446 10.541 3 0 Median 1.2342 1.3088 38.081 4 0 Median 1.0244 0.89847 4.7596 6 1 Median 340100000 161330000 178770000 89426000 43159000 46267000 37187000 18593000 18594000 33425000 15392000 18033000 72467000 35948000 36520000 60588000 24933000 35655000 47007000 23304000 23704000 25270 2627;2033 26618 134300;134301;134302;134303;134304;134305;134306;134307;134308;134309;134310;134311;134312;134313;134314;134315;134316;134317;134318;134319;134320;134321;134322;134323;134324;134325;134326;134327 135055;135056;135057;135058;135059;135060;135061;135062;135063;135064;135065;135066;135067;135068;135069;135070;135071;135072;135073;135074;135075;135076;135077;135078;135079;135080 135075 26 NDTKEDVFVHQTAIKK VKWFNVRNGYGFINRNDTKEDVFVHQTAIK DTKEDVFVHQTAIKKNNPRKYLRSVGDGET R N D K K N 1 0 1 2 0 1 1 0 1 1 0 3 0 1 0 0 2 0 0 2 0 0 16 2 1871.9741 P16989;P67809 P67809 78 93 YBX3;YBX1 Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1 no no 3;4 2.3902E-05 76.341 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 5 5 4 1.1471 1.1594 20.56 24 Median 1.1359 1.1195 11.782 5 0 Median 1.146 1.0849 15.892 3 1 Median 1.1728 1.3757 6.8819 2 0 Median 1.2191 1.1541 17.852 5 0 Median 1.2749 1.3887 32.644 5 0 Median 1.0628 0.98407 15.571 4 0 Median 245710000 114150000 131560000 84283000 42446000 41837000 11425000 5474100 5951100 4839100 2346400 2492800 29779000 13415000 16364000 72335000 29903000 42432000 43051000 20570000 22482000 25271 2627;2033 26619 134328;134329;134330;134331;134332;134333;134334;134335;134336;134337;134338;134339;134340;134341;134342;134343;134344;134345;134346;134347;134348;134349;134350;134351 135081;135082;135083;135084;135085;135086;135087;135088;135089;135090;135091;135092;135093;135094;135095;135096;135097;135098;135099;135100;135101;135102;135103;135104;135105;135106;135107;135108;135109;135110 135107 30 NDVFYLQPER YEFYLSKCSESVKQRNDVFYLQPERSCVPN SVKQRNDVFYLQPERSCVPNSPMWYSTFPI R N D E R S 0 1 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 10 0 1279.6197 Q5VZL5;H7C1I7;A6NHN7;A6NHB5;Q14202 Q5VZL5 1488 1497 ZMYM4;ZMYM3 Zinc finger MYM-type protein 4;Zinc finger MYM-type protein 3 no no 2 0.00056235 93.178 By MS/MS By matching By matching 1 1 1 0.85237 0.93979 26.557 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85237 0.93979 NaN 1 0 Median 1.1967 1.0484 NaN 1 0 Median 0.53851 0.63286 NaN 1 0 Median NaN NaN NaN 0 0 Median 6818000 3686700 3131300 0 0 0 0 0 0 4904800 2568500 2336300 524080 229340 294740 1389100 888840 500260 0 0 0 25272 3117;516 26620 134352;134353;134354 135111 135111 1 NDVLAHQATVETVNK PKVIEVELAKHHVLKNDVLAHQATVETVNK NDVLAHQATVETVNKAGNELLESSAGDDAS K N D N K A 2 0 2 1 0 1 1 0 1 0 1 1 0 0 0 0 2 0 0 3 0 0 15 0 1637.8373 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6372 6386 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 7.2733E-10 159 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1 1 1.0312 0.99838 42.096 10 Median 1.0178 1.0141 7.0386 3 2 Median 1.8115 1.6049 69.336 2 0 Median 0.7309 0.79086 28.377 2 0 Median 1.8919 1.8156 NaN 1 1 Median 0.65157 0.6827 NaN 1 0 Median 1.4038 1.2029 NaN 1 0 Median 63820000 27197000 36622000 18233000 9126000 9107200 32923000 11963000 20959000 7390800 3878700 3512200 1849300 733930 1115400 1160500 648210 512270 2263500 847550 1415900 25273 1220 26621 134355;134356;134357;134358;134359;134360;134361;134362;134363;134364 135112;135113;135114;135115;135116;135117;135118;135119;135120;135121;135122;135123;135124 135112 13 NDVLDSLGISPDLLPEDFVR SDTYEEDSELLLQIRNDVLDSLGISPDLLP SLGISPDLLPEDFVRYCFSEMAPVCAVVGG R N D V R Y 0 1 1 4 0 0 1 1 0 1 4 0 0 1 2 2 0 0 0 2 0 0 20 0 2213.1216 Q9UBE0;M0QZS6 Q9UBE0 274 293 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 3.0169E-18 134.24 By MS/MS 1 0.74392 0.63718 NaN 1 Median NaN NaN NaN 0 0 Median 0.74392 0.63718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1995400 1073000 922420 0 0 0 1995400 1073000 922420 0 0 0 0 0 0 0 0 0 0 0 0 25274 4237 26622 134365 135125;135126 135125 2 NDVMNLLESAGFSR AKKDQYFLDKKMVTKNDVMNLLESAGFSRS KNDVMNLLESAGFSRSNPYYIVKQGKINQM K N D S R S 1 1 2 1 0 0 1 1 0 0 2 0 1 1 0 2 0 0 0 1 0 0 14 0 1551.7351 Q9UQE7 Q9UQE7 119 132 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.2446E-07 114.82 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 5 2 0.95667 0.98118 45.053 13 Median 0.95682 0.94142 NaN 1 0 Median 0.4562 0.39308 NaN 1 0 Median 0.89353 0.98235 77.994 3 0 Median 1.2003 1.035 2.6449 2 0 Median 0.95951 1.0043 11.994 4 0 Median 0.91104 0.74369 39.192 2 0 Median 40100000 19976000 20124000 2319100 1038800 1280300 1621400 617860 1003500 20408000 10587000 9820100 1037100 492640 544460 13118000 6523900 6593600 1597300 715220 882110 25275 4362 26623;26624 134366;134367;134368;134369;134370;134371;134372;134373;134374;134375;134376;134377;134378;134379 135127;135128;135129;135130;135131;135132;135133;135134;135135;135136;135137;135138;135139;135140;135141;135142;135143;135144;135145;135146;135147;135148;135149;135150 135136 1941 24 NDVNVEFSEK ESQVVITLMIKNVQKNDVNVEFSEKELSAL KNVQKNDVNVEFSEKELSALVKLPSGEDYN K N D E K E 0 0 2 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 10 0 1179.5408 Q9Y2Z0 Q9Y2Z0 195 204 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 0.00063896 72.643 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.8695 0.78255 53.2 4 Median 0.93267 0.87094 NaN 1 0 Median 1.0918 0.93795 NaN 1 0 Median 0.27813 0.29512 NaN 1 0 Median 0.8106 0.70313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15014000 8829400 6184200 4008600 1960200 2048400 3633300 1589400 2043900 5125200 4020000 1105200 2246500 1259800 986670 0 0 0 0 0 0 25276 4398 26625 134380;134381;134382;134383 135151;135152;135153;135154 135152 4 NDWHGGAIVSALSQTGSLFKPR PEELALVHNLRKMMKNDWHGGAIVSALSQT IVSALSQTGSLFKPRKAYLPQELLGKEGFD K N D P R K 2 1 1 1 0 1 0 3 1 1 2 1 0 1 1 3 1 1 0 1 0 0 22 1 2340.1975 P51398;V9GZ03;V9GYA7;V9GYJ9;V9GZ61;V9GYC9 P51398 299 320 DAP3 28S ribosomal protein S29, mitochondrial yes no 3 0.0075301 27.72 By MS/MS 1 1.7493 1.6342 NaN 1 Median NaN NaN NaN 0 0 Median 1.7493 1.6342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1507000 657230 849730 0 0 0 1507000 657230 849730 0 0 0 0 0 0 0 0 0 0 0 0 25277 2431 26626 134384 135155 135155 1 NDYEARPQYYK EPHFLSILQHLLLVRNDYEARPQYYKLIEE LLVRNDYEARPQYYKLIEECISQIVLHKNG R N D Y K L 1 1 1 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 3 0 0 0 11 1 1445.6575 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 422 432 DIAPH1 Protein diaphanous homolog 1 yes no 2;3 0.012217 74.841 By matching By MS/MS By MS/MS 1 1 1 1.4237 1.2647 17.806 3 Median 1.0176 1.0408 NaN 1 0 Median 1.5826 1.4853 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4237 1.2647 NaN 1 0 Median 7638200 3238500 4399800 1949900 1010600 939300 4649500 1759300 2890300 0 0 0 0 0 0 0 0 0 1038800 468580 570200 25278 274 26627 134385;134386;134387 135156;135157 135156 2 NEAIQAAHDAVAQEGQCR TEKMSPEDRAKCFEKNEAIQAAHDAVAQEG IQAAHDAVAQEGQCRVDDKVNFHFILFNNV K N E C R V 5 1 1 1 1 3 2 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 18 0 1966.8915 P09936;D6R956;D6R974 P09936 136 153 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 3 9.6663E-12 104.61 By MS/MS By matching 1 2 1.1527 0.97542 12.876 3 Plateau 1.1146 1.0583 NaN 1 0 Median 1.0604 0.89558 12.076 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65004000 27253000 37751000 16973000 6877600 10096000 48031000 20376000 27655000 0 0 0 0 0 0 0 0 0 0 0 0 25279 1923 26628 134388;134389;134390 135158 135158 1 NEALAALLR QIIKIGLFADIELSRNEALAALLRDGETLE DIELSRNEALAALLRDGETLEELMKLSPEE R N E L R D 3 1 1 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 969.56073 P13797;A0A0A0MSQ0 P13797 248 256 PLS3 Plastin-3 yes no 2 0.00056978 113.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 1 1.0661 0.98257 24.728 11 Median 0.77061 0.75492 18.824 4 1 Median 1.2639 1.071 10.083 3 0 Median 0.85633 0.88342 49.114 2 1 Median 1.2599 1.0522 NaN 1 0 Median 1.0661 1.0732 NaN 1 1 Median NaN NaN NaN 0 0 Median 403940000 182480000 221470000 146450000 67702000 78750000 224240000 100780000 123460000 30159000 12622000 17536000 1405100 647150 757910 1688300 722260 966030 0 0 0 25280 1995 26629 134391;134392;134393;134394;134395;134396;134397;134398;134399;134400;134401;134402 135159;135160;135161;135162;135163;135164;135165;135166;135167;135168;135169;135170;135171;135172 135160 14 NEALAALLRDGETLEELMK QIIKIGLFADIELSRNEALAALLRDGETLE AALLRDGETLEELMKLSPEELLLRWANFHL R N E M K L 3 1 1 1 0 0 4 1 0 0 5 1 1 0 0 0 1 0 0 0 0 0 19 1 2115.0882 P13797;A0A0A0MSQ0 P13797 248 266 PLS3 Plastin-3 yes no 3 0.070548 8.0864 By MS/MS 1 1.1487 1.1664 NaN 1 Median 1.1487 1.1664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1152900 439770 713160 1152900 439770 713160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25281 1995 26630 134403 135173 135173 1 NEAPEGNLGDFAEFQR IYGERLYETSYRLSKNEAPEGNLGDFAEFQ EAPEGNLGDFAEFQRRHSMQTPVRMEWSGI K N E Q R R 2 1 2 1 0 1 3 2 0 0 1 0 0 2 1 0 0 0 0 0 0 0 16 0 1792.8016 Q9UKN8 Q9UKN8 226 241 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 3.5582E-10 112.51 By matching By MS/MS By matching 1 1 1 0.69508 0.73952 36.569 3 Median NaN NaN NaN 0 0 Median 0.96482 0.87106 NaN 1 0 Median 0.69508 0.73952 NaN 1 0 Median 0.50713 0.43291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8307400 4567500 3739900 0 0 0 331020 150360 180660 7382100 4046600 3335500 594250 370530 223730 0 0 0 0 0 0 25282 4314 26631 134404;134405;134406 135174;135175 135175 2 NEATVETLTETK KIGMRGKPKVIDLTRNEATVETLTETKIHC LTRNEATVETLTETKIHCETDEKDFYLYYF R N E T K I 1 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 4 0 0 1 0 0 12 0 1334.6565 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 513 524 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00040451 79.693 By MS/MS By MS/MS 2 1 1.2982 1.1026 73.097 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65167 0.6809 95.59 2 0 Median 1.334 1.1026 NaN 1 0 Median 9182600 4135400 5047200 0 0 0 0 0 0 0 0 0 0 0 0 7706600 3527800 4178800 1476000 607590 868410 25283 1118 26632 134407;134408;134409 135176;135177 135176 2 NECDPALALLSDYVLHNSNTMR SGALLACGIVNSGVRNECDPALALLSDYVL ALLSDYVLHNSNTMRLGSIFGLGLAYAGSN R N E M R L 2 1 3 2 1 0 1 0 1 0 4 0 1 0 1 2 1 0 1 1 0 0 22 0 2532.1737 Q13200 Q13200 457 478 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 0.027989 13.057 By MS/MS 1 0.85878 0.78445 NaN 1 Median NaN NaN NaN 0 0 Median 0.85878 0.78445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 640960 275520 365440 0 0 0 640960 275520 365440 0 0 0 0 0 0 0 0 0 0 0 0 25284 2796 26633 134410 135178 135178 1 NECFLSHK YGDMADCCEKQEPERNECFLSHKDDSPDLP EKQEPERNECFLSHKDDSPDLPKLKPDPNT R N E H K D 0 0 1 0 1 0 1 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 8 0 1033.4651 CON__P02769 CON__P02769 123 130 yes yes 2 0.03759 56.729 By MS/MS 1 0.77996 0.66372 NaN 1 Median NaN NaN NaN 0 0 Median 0.77996 0.66372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4553400 4165700 387640 0 0 0 4553400 4165700 387640 0 0 0 0 0 0 0 0 0 0 0 0 + 25285 746 26634 134411 135179 135179 1 NECFLSHKDDSPDLPK YGDMADCCEKQEPERNECFLSHKDDSPDLP ECFLSHKDDSPDLPKLKPDPNTLCDEFKAD R N E P K L 0 0 1 3 1 0 1 0 1 0 2 2 0 1 2 2 0 0 0 0 0 0 16 1 1900.8625 CON__P02769 CON__P02769 123 138 yes yes 3 3.9745E-05 62.861 By MS/MS By MS/MS 1 1 0.15622 0.14665 108.67 2 Median 0.3352 0.31621 NaN 1 1 Median 0.072807 0.068008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14663000 12856000 1807000 5770700 4419000 1351700 8892700 8437400 455290 0 0 0 0 0 0 0 0 0 0 0 0 + 25286 746 26635 134412;134413 135180;135181 135181 2 NEDEDSPNKLYTLVTYVPVTTFK RNVPYRIRVRLSRKRNEDEDSPNKLYTLVT KLYTLVTYVPVTTFKNLQTVNVDEN_____ R N E F K N 0 0 2 2 0 0 2 0 0 0 2 2 0 1 2 1 4 0 2 3 0 0 23 1 2672.3221 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8 P62899 93 115 RPL31 60S ribosomal protein L31 yes no 3 0.03663 12.314 By MS/MS 1 0.86338 0.76323 NaN 1 Median NaN NaN NaN 0 0 Median 0.86338 0.76323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1080100 557040 523040 0 0 0 1080100 557040 523040 0 0 0 0 0 0 0 0 0 0 0 0 25287 2607 26636 134414 135182 135182 1 NEDITEPQSILAAAEK LEKASRELWMRVWSRNEDITEPQSILAAAE EDITEPQSILAAAEKAGMSAEQAQGLLEKI R N E E K A 3 0 1 1 0 1 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 16 0 1727.8578 Q9Y2Q3;E9PFN5 Q9Y2Q3 129 144 GSTK1 Glutathione S-transferase kappa 1 yes no 2 8.3891E-10 102.97 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.74955 0.78987 19.611 5 Median 0.68813 0.63698 NaN 1 0 Median 1.1126 0.93694 NaN 1 0 Median 0.74637 0.74556 8.165 2 0 Median 1.2385 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42454000 22900000 19553000 26734000 14899000 11835000 3903300 1742700 2160600 10641000 5744600 4896200 1175500 514030 661430 0 0 0 0 0 0 25288 4386 26637 134415;134416;134417;134418;134419 135183;135184;135185;135186;135187;135188 135184 6 NEDKILTIEVK KISHKRLNPDGKSIRNEDKILTIEVKKGWK KSIRNEDKILTIEVKKGWKEGTKITFPKEG R N E V K K 0 0 1 1 0 0 2 0 0 2 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1300.7238 P25685;M0R080;M0QYT3;M0QXK0 P25685 199 209 DNAJB1 DnaJ homolog subfamily B member 1 yes no 3 0.017629 26.012 By matching By MS/MS By MS/MS 2 1 1 1.1823 1.1187 19.549 4 Median 1.1823 1.1379 2.1417 2 0 Median NaN NaN NaN 0 0 Median 0.70268 0.76572 NaN 1 0 Median 1.254 1.1166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20300000 11519000 8780700 5309200 2371600 2937600 0 0 0 13669000 8522200 5146900 1321400 625250 696170 0 0 0 0 0 0 25289 2134 26638 134420;134421;134422;134423 135189;135190 135189 2 NEDVQLR DDSLYPIAVLIDELRNEDVQLRLNSIKKLS AVLIDELRNEDVQLRLNSIKKLSTIALALG R N E L R L 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 872.43519 P30153;E9PPI5;E9PHZ6;P30154 P30153 22 28 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform no no 2 0.021555 58.981 By MS/MS By MS/MS 1 1 0.97077 0.89109 1.4267 2 Median 0.89096 0.88214 NaN 1 0 Median 1.0577 0.90012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7239700 3711400 3528300 3258300 1823200 1435100 3981400 1888200 2093200 0 0 0 0 0 0 0 0 0 0 0 0 25290 2190;2191 26639 134424;134425 135191;135192;135193 135192 3 NEEDAAELVALAQAVNAR LHQFCAQHGRPPRPRNEEDAAELVALAQAV DAAELVALAQAVNARALPAVQQNNLDEDLI R N E A R A 6 1 2 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 18 0 1882.9385 P22314 P22314 351 368 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 4.5127E-14 115.14 By MS/MS By matching By MS/MS By MS/MS By matching 5 1 4 3 1 1.0133 0.98981 21.154 14 Median 1.0238 0.99595 6.8081 5 2 Median 0.63512 0.75917 NaN 1 0 Median 0.90303 0.96955 10.396 4 1 Median NaN NaN NaN 0 0 Median 1.3615 1.4366 13.693 3 0 Median 1.0239 0.86817 NaN 1 0 Median 85815000 40578000 45237000 75215000 35348000 39868000 316600 211850 104750 8467200 4240600 4226600 0 0 0 1724700 733210 991460 91248 44573 46675 25291 2100 26640 134426;134427;134428;134429;134430;134431;134432;134433;134434;134435;134436;134437;134438;134439 135194;135195;135196;135197;135198;135199;135200;135201;135202;135203;135204;135205;135206;135207 135196 14 NEEEGNSEEIK VLNKDIQEDSGMEPRNEEEGNSEEIKAKVK MEPRNEEEGNSEEIKAKVKNKKQGCKNEEV R N E I K A 0 0 2 0 0 0 5 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 11 0 1276.5419 O75844 O75844 304 314 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2 0.0058304 45.368 By matching By MS/MS 1 2 1.2188 1.0632 4.8501 3 Median 1.1884 1.144 NaN 1 0 Median 1.2301 1.0534 1.3008 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1331000 582410 748550 92797 42734 50063 1238200 539680 698490 0 0 0 0 0 0 0 0 0 0 0 0 25292 1700 26641 134440;134441;134442 135208;135209 135208 2 NEEIQSFIYSLK QREALRKIIKTLAVKNEEIQSFIYSLKQML AVKNEEIQSFIYSLKQMLLNVEANSAKVQE K N E L K Q 0 0 1 0 0 1 2 0 0 2 1 1 0 1 0 2 0 0 1 0 0 0 12 0 1469.7402 M0R366;Q9BTV5;M0R1R0 M0R366 19 30 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 2 0.00058433 74.162 By MS/MS By MS/MS 1 1 2.1869 2.0166 82.807 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1311 1.1229 NaN 1 0 Median 4.2281 3.6218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36276000 18071000 18205000 0 0 0 0 0 0 6592000 3318200 3273800 29684000 14753000 14931000 0 0 0 0 0 0 25293 1438 26642 134443;134444 135210;135211;135212;135213 135213 4 NEELKEVEEER IQERWLQDNLTLRKRNEELKEVEEERKQHL LRKRNEELKEVEEERKQHLKEMGQMQVLQM R N E E R K 0 1 1 0 0 0 6 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1402.6576 Q92878;A0A1W2PQ90 Q92878 1028 1038 RAD50 DNA repair protein RAD50 yes no 2;3 0.00042896 107.24 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 0.85529 0.96842 44.644 7 Median 0.65615 0.73134 NaN 1 0 Median 0.86924 0.78145 98.912 2 1 Median 0.78002 0.88402 13.026 2 0 Median 1.1445 1.1048 18.64 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14744000 7559200 7184400 622790 339690 283100 1996400 832620 1163800 7831100 4504900 3326200 4293300 1882000 2411300 0 0 0 0 0 0 25294 3561 26643 134445;134446;134447;134448;134449;134450;134451 135214;135215;135216;135217;135218;135219 135219 6 NEELKEVEEERK IQERWLQDNLTLRKRNEELKEVEEERKQHL RKRNEELKEVEEERKQHLKEMGQMQVLQMK R N E R K Q 0 1 1 0 0 0 6 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 12 2 1530.7526 Q92878;A0A1W2PQ90 Q92878 1028 1039 RAD50 DNA repair protein RAD50 yes no 3 0.0083054 30.438 By MS/MS 1 0.96294 1.0972 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96294 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2087700 985360 1102300 0 0 0 0 0 0 2087700 985360 1102300 0 0 0 0 0 0 0 0 0 25295 3561 26644 134452 135220;135221 135221 2 NEEPSEEEIDAPKPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK NEEPSEEEIDAPKPKKMKKEKEMNGETREK K N E P K K 1 0 1 1 0 0 5 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 15 1 1710.7948 Q9NR30 Q9NR30 117 131 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 7.7648E-05 79.693 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 0.70159 0.7501 6.3111 7 Median NaN NaN NaN 0 0 Median 0.70159 0.67863 NaN 1 0 Median 0.6984 0.79397 7.0148 3 0 Median 0.77296 0.7551 0.93983 2 0 Median 0.63567 0.71213 NaN 1 0 Median NaN NaN NaN 0 0 Median 38332000 21546000 16786000 0 0 0 2344900 1291700 1053200 23870000 13511000 10359000 6296800 3552500 2744300 5820300 3190600 2629700 0 0 0 25296 4076 26645 134453;134454;134455;134456;134457;134458;134459;134460 135222;135223;135224;135225;135226;135227;135228;135229;135230;135231;135232;135233;135234;135235;135236;135237;135238 135224 17 NEESLVFVQTDKPIYKPEQTVK GPTQEFKKRTTVLVKNEESLVFVQTDKPIY VQTDKPIYKPEQTVKFRIVLLDESFHPLNE K N E V K F 0 0 1 1 0 2 3 0 0 1 1 3 0 1 2 1 2 0 1 3 0 0 22 2 2591.3483 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 124 145 yes yes 3 1.1884E-32 123.99 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21878000 21878000 0 21878000 21878000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25297 734 26646 134461;134462 135239;135240 135240 2 NEEVLAVLGHELGHWK EEIKAKVKNKKQGCKNEEVLAVLGHELGHW EEVLAVLGHELGHWKLGHTVKNIIISQMNS K N E W K L 1 0 1 0 0 0 3 2 2 0 3 1 0 0 0 0 0 1 0 2 0 0 16 0 1829.9424 O75844 O75844 326 341 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2;3 7.7692E-06 82.651 By matching By MS/MS By matching By matching By matching 1 5 1 1 1 1.2814 1.1445 21.741 9 Median 1.2299 1.1654 NaN 1 0 Median 1.2855 1.1445 19.916 5 0 Median 0.87833 0.83795 NaN 1 0 Median 1.0998 0.88385 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6528 1.3831 NaN 1 0 Median 36344000 15648000 20696000 906530 399720 506810 31834000 13421000 18413000 3180800 1656300 1524500 115640 56711 58925 0 0 0 306860 114450 192410 25298 1700 26647 134463;134464;134465;134466;134467;134468;134469;134470;134471 135241;135242;135243 135242 3 NEFLGELQK DSKPFSLQETYEAKRNEFLGELQKKEEEMR TYEAKRNEFLGELQKKEEEMRQMFVMRVKE R N E Q K K 0 0 1 0 0 1 2 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1076.5502 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141 D6RGI3 328 336 SEPT11;SEPT6 Septin-11;Septin-6 no no 2 0.064653 44.98 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25299 822;573 26648 134472 135244 135244 1 NEFNLESK DSGVGKSNLLSRFTRNEFNLESKSTIGVEF LLSRFTRNEFNLESKSTIGVEFATRSIQVD R N E S K S 0 0 2 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 8 0 979.46108 H3BSC1;P62491;H3BMH2;Q15907 Q15907 34 41 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.0035864 87.181 By MS/MS By MS/MS 1 1 1.138 1.0068 1.4619 2 Median 1.0714 0.99645 NaN 1 0 Median 1.2087 1.0173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21614000 10602000 11011000 17499000 8685600 8813700 4114600 1916800 2197800 0 0 0 0 0 0 0 0 0 0 0 0 25300 1233;2976 26649 134473;134474 135245;135246;135247 135245 3 NEGNIFPNPEATFVK YLRINFYCPGSALGRNEGNIFPNPEATFVK NEGNIFPNPEATFVKEITYRASNIKAPGEQ R N E V K E 1 0 3 0 0 0 2 1 0 1 0 1 0 2 2 0 1 0 0 1 0 0 15 0 1675.8206 Q9Y5B9 Q9Y5B9 582 596 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00019624 68.44 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 0.66615 0.6262 17.949 6 Median 0.44187 0.44307 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67882 0.73396 NaN 1 0 Median 0.73302 0.64681 9.1414 2 0 Median 0.53841 0.56375 NaN 1 1 Median 0.753 0.64673 NaN 1 0 Median 32459000 22163000 10297000 14282000 10143000 4138200 0 0 0 2692000 1900100 791880 908610 513040 395570 13766000 9119500 4646600 811070 486410 324660 25301 4456 26650 134475;134476;134477;134478;134479;134480 135248;135249;135250;135251;135252;135253 135253 6 NEGQLNGETNTPIEGNQAGDAAASAR VSKFREIQQELSSGRNEGQLNGETNTPIEG PIEGNQAGDAAASARSLPNEEIVQKIEEVL R N E A R S 5 1 4 1 0 2 3 4 0 1 1 0 0 0 1 1 2 0 0 0 0 0 26 0 2584.175 P18583;J3QSZ5 P18583 29 54 SON Protein SON yes no 3 5.1897E-26 84.404 By MS/MS 1 1.156 1.1958 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.156 1.1958 NaN 1 0 Median NaN NaN NaN 0 0 Median 7722000 3227400 4494600 0 0 0 0 0 0 0 0 0 0 0 0 7722000 3227400 4494600 0 0 0 25302 2058 26651 134481 135254;135255 135254 2 NEGTATYAAAVLFR AEGASAPLMELLHSRNEGTATYAAAVLFRI RNEGTATYAAAVLFRISEDKNPDYRKRVSV R N E F R I 4 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 2 0 1 1 0 0 14 0 1482.7467 P14923 P14923 638 651 JUP Junction plakoglobin yes yes 2 6.525E-08 137.17 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 3 1 0.64535 0.60594 44.886 10 Median 0.5719 0.56714 11.692 2 1 Median 0.97015 0.84117 NaN 1 0 Median 0.53305 0.57523 5.0221 2 1 Median 0.20792 0.19231 NaN 1 0 Median 0.84449 0.87377 9.7416 3 1 Median 0.65746 0.5795 NaN 1 0 Median 31374000 18045000 13329000 6304500 3317800 2986800 2673900 1327500 1346400 10082000 6804300 3278100 200890 148970 51920 11855000 6317700 5537600 256800 129100 127700 25303 2013 26652 134482;134483;134484;134485;134486;134487;134488;134489;134490;134491 135256;135257;135258;135259;135260;135261;135262 135261 7 NEGVATYAAAVLFR AEGATAPLTELLHSRNEGVATYAAAVLFRM RNEGVATYAAAVLFRMSEDKPQDYKKRLSV R N E F R M 4 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 2 0 0 14 0 1480.7674 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0;A0A2R8YG06 A0A2R8Y804 648 661 CTNNB1 Catenin beta-1 yes no 2 0.00078971 60.434 By MS/MS By MS/MS By matching 1 1 1 0.85639 0.73953 5.0226 3 Plateau 0.71562 0.70983 NaN 1 0 Median 0.88145 0.77048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85639 0.70328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3258100 1896100 1362000 1449300 920770 528530 1734100 948300 785760 0 0 0 74736 27012 47724 0 0 0 0 0 0 25304 368 26653 134492;134493;134494 135263;135264;135265;135266 135264 4 NEGVNWLR VECARVYAENAIRKKNEGVNWLRMASRVDA ENAIRKKNEGVNWLRMASRVDAVASKVQTA K N E L R M 0 1 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 8 0 986.49338 F8VUA2;F8VVT7;Q9HD42 F8VUA2 57 64 CHMP1A Charged multivesicular body protein 1a yes no 2 0.0034479 95.62 By MS/MS By matching By MS/MS 1 1 1 0.89283 0.83217 3.8314 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89283 0.85758 NaN 1 0 Median 0.96924 0.79866 NaN 1 0 Median 0.81116 0.8075 NaN 1 0 Median NaN NaN NaN 0 0 Median 12820000 6755700 6064700 0 0 0 0 0 0 7278900 3806600 3472300 648570 343070 305500 4892900 2606100 2286800 0 0 0 25305 1066 26654 134495;134496;134497 135267;135268;135269 135267 3 NEHRPASALVNPLAR NHWASPELRQNPGVKNEHRPASALVNPLAR NEHRPASALVNPLARGDSPENRTHHPLGAG K N E A R G 3 2 2 0 0 0 1 0 1 0 2 0 0 0 2 1 0 0 0 1 0 0 15 1 1643.8856 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 325 339 SEC16A Protein transport protein Sec16A yes no 3 0.00010391 66.387 By MS/MS By MS/MS 1 1 1.2655 1.2669 32.636 2 Median 1.4922 1.5958 NaN 1 1 Median 1.0732 1.0058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13257000 5996300 7260600 5053000 1964700 3088200 8203900 4031600 4172300 0 0 0 0 0 0 0 0 0 0 0 0 25306 1513 26655 134498;134499 135270;135271 135271 2 NEIDNYEEDYQK LTEAEKLLTQHENIKNEIDNYEEDYQKMRD NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA K N E Q K M 0 0 2 2 0 1 3 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 12 0 1558.6423 Q01082;A0A087WUZ3 Q01082 1109 1120 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 4.28E-06 104.52 By matching By matching By MS/MS 1 1 1 0.92292 0.98157 13.188 3 Plateau NaN NaN NaN 0 0 Median 0.92001 0.7991 NaN 1 0 Median 0.92292 1.0284 NaN 1 0 Median 0.93752 0.84804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7425500 3997600 3427900 0 0 0 824290 399610 424680 4171300 2351400 1819900 2429900 1246600 1183300 0 0 0 0 0 0 25307 2681 26656 134500;134501;134502 135272;135273 135273 2 NEILDEVISLSQVTPK RLRELDRNELFEKAKNEILDEVISLSQVTP EILDEVISLSQVTPKHWEEILQQSLWERVS K N E P K H 0 0 1 1 0 1 2 0 0 2 2 1 0 0 1 2 1 0 0 2 0 0 16 0 1783.9567 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5 A0A2R8Y3X5 493 508 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 5.0092E-08 95.018 By MS/MS 1 1.2884 1.1494 NaN 1 Median NaN NaN NaN 0 0 Median 1.2884 1.1494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1238500 661450 577030 0 0 0 1238500 661450 577030 0 0 0 0 0 0 0 0 0 0 0 0 25308 357 26657 134503 135274 135274 1 NEINIDTLAR WKMFYDARKPRSQIKNEINIDTLARDEFNL RSQIKNEINIDTLARDEFNLQKMMVMVTAS K N E A R D 1 1 2 1 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1157.6041 Q8N766;A0A286YEW0 Q8N766 518 527 EMC1 ER membrane protein complex subunit 1 yes no 2 0.015167 55.549 By MS/MS 1 0.97755 0.82608 NaN 1 Median NaN NaN NaN 0 0 Median 0.97755 0.82608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4677900 2335200 2342700 0 0 0 4677900 2335200 2342700 0 0 0 0 0 0 0 0 0 0 0 0 25309 3392 26658 134504 135275 135275 1 NEIREWEAK KMMVANKPDKIQQAKNEIREWEAKVQQGER KIQQAKNEIREWEAKVQQGERDFEQISKTI K N E A K V 1 1 1 0 0 0 3 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 9 1 1173.5778 O60749 O60749 448 456 SNX2 Sorting nexin-2 yes yes 2 0.0034279 102.07 By MS/MS By matching 1 1 0.97596 0.93335 12.658 2 Median 1.0172 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9364 0.85344 NaN 1 0 Median 10546000 5017000 5528700 8998000 4457500 4540500 0 0 0 0 0 0 0 0 0 0 0 0 1547700 559520 988200 25310 1629 26659 134505;134506 135276;135277 135277 2 NEITINISHIER N E E R 0 1 2 0 0 0 2 0 1 4 0 0 0 0 0 1 1 0 0 0 0 0 12 0 1437.7576 REV__Q86XX4 yes yes 2 0.010147 37.191 By MS/MS 2 0.95469 0.89574 0 2 Median 0.95469 0.89574 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69504000 33583000 35921000 69504000 33583000 35921000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25311 4549 26660 134507;134508 135278 135278 1 NEKDNALLSAIEESR PLEPVKDTDIQGFLKNEKDNALLSAIEESR NEKDNALLSAIEESRKRTFGMAEEYHRESM K N E S R K 2 1 2 1 0 0 3 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 15 1 1687.8377 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 104 118 NUP93 Nuclear pore complex protein Nup93 yes no 2;3 7.862E-07 134.08 By MS/MS By matching By matching By matching 3 2 1 3 0.9983 1.0688 10.838 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98827 1.1159 16.314 3 0 Plateau 1.0535 1.0079 9.6156 2 0 Median 0.96704 1.0729 NaN 1 0 Median 1.1542 1.0688 6.5216 3 0 Median 41424000 21398000 20026000 0 0 0 0 0 0 37387000 19415000 17972000 1789400 908670 880730 1785700 867650 918060 462280 206180 256100 25312 3356 26661 134509;134510;134511;134512;134513;134514;134515;134516;134517 135279;135280;135281;135282;135283 135282 4 NELEIPGQYDGR ECSPWMSDFKVEFLRNELEIPGQYDGRGKP FLRNELEIPGQYDGRGKPLPEYHVRIAGFD R N E G R G 0 1 1 1 0 1 2 2 0 1 1 0 0 0 1 0 0 0 1 0 0 0 12 0 1389.6525 P78527 P78527 3697 3708 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.6148E-42 175.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 3 4 1 0.77037 0.78879 40.375 14 Median 0.31832 0.30228 40.711 2 2 Median 0.69687 0.55663 NaN 1 1 Median 0.75921 0.79025 5.2193 4 2 Median 0.94615 0.82532 20.191 3 2 Median 0.77848 0.79887 7.6161 3 2 Median 1.2372 1.0362 NaN 1 0 Median 580210000 346600000 233610000 134790000 96568000 38219000 46113000 32059000 14054000 346390000 187710000 158680000 23808000 13982000 9825800 28415000 15959000 12456000 704230 324160 380070 25313 2647 26662 134518;134519;134520;134521;134522;134523;134524;134525;134526;134527;134528;134529;134530;134531;134532 135284;135285;135286;135287;135288;135289;135290;135291;135292;135293;135294;135295;135296;135297;135298;135299;135300;135301;135302;135303;135304 135294 20 NELESYAYSLK FAEEDKKLKERIDTRNELESYAYSLKNQIG IDTRNELESYAYSLKNQIGDKEKLGGKLSS R N E L K N 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 2 0 0 0 11 0 1315.6296 P11021 P11021 563 573 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.00013505 100.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1 1.2753 1.1771 8.438 10 Median 1.1531 1.0287 3.889 2 0 Median 1.3212 1.1269 9.0088 4 0 Median 1.2394 1.223 0.16703 2 2 Median 1.3964 1.1899 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4846 1.2283 NaN 1 0 Median 294150000 131970000 162180000 143600000 65587000 78012000 58123000 24453000 33670000 88376000 40285000 48091000 2688700 1143900 1544900 0 0 0 1360800 497340 863460 25314 1948 26663 134533;134534;134535;134536;134537;134538;134539;134540;134541;134542 135305;135306;135307;135308;135309;135310;135311;135312;135313 135305 9 NELFLPGR RNVYRMLFKSKAYERNELFLPGRMAYVVDL KSKAYERNELFLPGRMAYVVDLDDEYADTD R N E G R M 0 1 1 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 944.50797 Q13123;E7EQZ7 Q13123 229 236 IK Protein Red yes no 2 0.0067369 69.998 By matching By MS/MS By matching 1 4 2 0.87129 0.84951 12.9 7 Median NaN NaN NaN 0 0 Median 0.9638 0.84951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83639 0.85702 13.492 4 0 Median 1.0175 0.82344 21.096 2 0 Median 30384000 16431000 13953000 0 0 0 473900 250190 223710 0 0 0 0 0 0 22112000 12612000 9500200 7798200 3568800 4229500 25315 2787 26664 134543;134544;134545;134546;134547;134548;134549 135314 135314 1 NELLLNQEVNK EKTSALQEEADSIQRNELLLNQEVNKGVKE SIQRNELLLNQEVNKGVKEEIYNLKDRLTA R N E N K G 0 0 3 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1312.6987 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2965 2975 SYNE2 Nesprin-2 yes no 2 0.00013697 145.9 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.015 1.0128 25.09 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79972 0.85472 NaN 1 0 Median 1.2881 1.2511 NaN 1 0 Median 0.71501 0.75225 NaN 1 0 Median 1.4002 1.2001 NaN 1 0 Median 20608000 11327000 9280900 0 0 0 0 0 0 12728000 7468500 5259500 3332800 1392400 1940400 3405700 1981200 1424500 1141400 484880 656470 25316 3521 26665 134550;134551;134552;134553 135315;135316;135317;135318;135319 135315 5 NELMYQLEQDHDLQAILQER PLAFATPEQISMDLKNELMYQLEQDHDLQA QLEQDHDLQAILQERELLPVKKFESEILEA K N E E R E 1 1 1 2 0 4 3 0 1 1 4 0 1 0 0 0 0 0 1 0 0 0 20 0 2485.1907 Q08211 Q08211 366 385 DHX9 ATP-dependent RNA helicase A yes yes 3 2.7848E-19 145.75 By matching By MS/MS By MS/MS By matching By MS/MS 1 7 5 1 2 1.14 1.1749 23.924 16 Median 1.3552 1.3707 NaN 1 0 Median 1.3551 1.1715 33.354 7 0 Median 1.0716 1.1012 15.533 5 0 Median 1.4457 1.2875 NaN 1 0 Median 1.1377 1.1724 4.8686 2 0 Median NaN NaN NaN 0 0 Median 84853000 35514000 49338000 862950 421610 441340 53249000 21130000 32119000 26649000 12077000 14572000 109350 61685 47661 3982800 1824600 2158200 0 0 0 25317 2736 26666;26667 134554;134555;134556;134557;134558;134559;134560;134561;134562;134563;134564;134565;134566;134567;134568;134569 135320;135321;135322;135323;135324;135325;135326;135327;135328;135329;135330;135331;135332 135329 1425 13 NELQMQLASK LNDMQAQLVEECAHRNELQMQLASKESDIE ECAHRNELQMQLASKESDIEQLRAKLLDLS R N E S K E 1 0 1 0 0 2 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 10 0 1160.586 A0A0U1RQV4;Q13464 A0A0U1RQV4 1074 1083 ROCK1 Rho-associated protein kinase 1 yes no 2 0.028781 53.327 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25318 305 26668 134570 135333 135333 1 NELSGALTGLTR RELPLRLADFGVLHRNELSGALTGLTRVRR LHRNELSGALTGLTRVRRFQQDDAHIFCAM R N E T R V 1 1 1 0 0 0 1 2 0 0 3 0 0 0 0 1 2 0 0 0 0 0 12 0 1230.6568 P26639 P26639 443 454 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 4.4469E-15 145.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 5 3 1 1.3216 1.3318 36.532 12 Median 1.1779 1.1289 25.67 2 1 Median 1.183 1.0237 NaN 1 0 Median 1.4975 1.5615 22.706 5 0 Median 1.3228 1.1582 15.141 3 0 Median NaN NaN NaN 0 0 Median 0.68197 0.54798 NaN 1 0 Median 266320000 115390000 150930000 89892000 40395000 49497000 52188000 23558000 28631000 105210000 42930000 62283000 18826000 8392600 10433000 0 0 0 205020 118770 86248 25319 2147 26669 134571;134572;134573;134574;134575;134576;134577;134578;134579;134580;134581;134582 135334;135335;135336;135337;135338;135339;135340;135341;135342;135343;135344;135345 135335 12 NEMGHTPLDYAR TVKELLDGGANPLQRNEMGHTPLDYAREGE LQRNEMGHTPLDYAREGEVMKLLRTSEAKY R N E A R E 1 1 1 1 0 0 1 1 1 0 1 0 1 0 1 0 1 0 1 0 0 0 12 0 1402.6299 H0YGM0;Q9H078;A0A2U3TZY2 H0YGM0 301 312 CLPB Caseinolytic peptidase B protein homolog no no 3 0.0011582 43.991 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0709 1.0575 10.96 4 Median 1.1295 1.0949 NaN 1 0 Median 1.3081 1.1278 NaN 1 0 Median 0.97397 1.0213 NaN 1 0 Median 1.0153 0.88207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10293000 5148200 5145100 5502400 2884200 2618100 1381100 650740 730410 2823400 1350000 1473400 586310 263130 323180 0 0 0 0 0 0 25320 1181 26670 134583;134584;134585;134586 135346;135347;135348 135346 3 NENEEILERPAQLANAR EGFGHRPHKDLWASKNENEEILERPAQLAN NEEILERPAQLANARETPHSPGVEDAPIAK K N E A R E 3 2 3 0 0 1 4 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 17 1 1965.9868 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 469 485 LIMA1 LIM domain and actin-binding protein 1 yes no 3 7.4582E-06 74.816 By MS/MS By MS/MS 1 4 0.93404 0.91442 16.564 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74288 0.85838 NaN 1 0 Median 1.0052 0.93625 19.066 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24219000 13478000 10740000 0 0 0 0 0 0 18228000 10769000 7459000 5990600 2709500 3281100 0 0 0 0 0 0 25321 4273 26671 134587;134588;134589;134590;134591 135349;135350;135351;135352;135353;135354;135355 135350 7 NENNSHAFIR VKECLWFVLEILMAKNENNSHAFIRKMVEN ILMAKNENNSHAFIRKMVENIKQTKDAQGP K N E I R K 1 1 3 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 10 0 1200.5636 Q9NTI5 Q9NTI5 1032 1041 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.0077838 34.532 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1318 1.0387 16.9 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0535 1.1328 NaN 1 0 Median 1.2159 1.0589 NaN 1 0 Median 0.74556 0.77141 NaN 1 0 Median 1.2304 1.0189 NaN 1 0 Median 2326100 1245600 1080600 0 0 0 0 0 0 848030 474770 373260 199630 95341 104280 891750 525310 366430 386750 150160 236590 25322 4107 26672 134592;134593;134594;134595 135356;135357;135358;135359 135358 4 NENPVDYTVQIPPSTTYAITPMK LGMDPLPSKMPKKPKNENPVDYTVQIPPST VQIPPSTTYAITPMKRPMEEDGEEKSPSKK K N E M K R 1 0 2 1 0 1 1 0 0 2 0 1 1 0 4 1 4 0 2 2 0 0 23 0 2578.2625 Q12906 Q12906 349 371 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 6.4486E-12 57.692 By MS/MS By MS/MS By matching By MS/MS By matching 3 8 2 6 2 0.52445 0.54759 23.516 21 Median 0.54721 0.55705 8.9359 3 0 Median NaN NaN NaN 0 0 Median 0.51344 0.56583 29.455 8 1 Median 0.7081 0.62465 5.2945 2 0 Median 0.47252 0.49958 22.512 6 0 Median 0.67786 0.57362 8.2442 2 0 Median 65626000 43008000 22619000 4668100 2848900 1819200 0 0 0 33299000 21765000 11535000 438820 247810 191020 26433000 17675000 8758200 786580 471280 315300 25323 2769 26673 134596;134597;134598;134599;134600;134601;134602;134603;134604;134605;134606;134607;134608;134609;134610;134611;134612;134613;134614;134615;134616 135360;135361;135362;135363;135364;135365;135366;135367;135368;135369;135370;135371;135372;135373 135364 14 NENQLIIFADDTYPR VSDVQESFIWVRYKRNENQLIIFADDTYPR NENQLIIFADDTYPRWVTTASLLDYDTVAG R N E P R W 1 1 2 2 0 1 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 15 0 1807.8741 Q15393 Q15393 1017 1031 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 4.9652E-08 125.28 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 6 2 1 0.85916 0.81542 23.707 10 Median 0.53772 0.53461 NaN 1 0 Median 0.94222 0.81682 NaN 1 0 Median 0.85385 0.92615 24.245 5 0 Median 0.93397 0.81423 2.5735 2 0 Median 0.69901 0.70312 NaN 1 0 Median NaN NaN NaN 0 0 Median 19249000 10963000 8286500 6621300 3788000 2833400 362180 192910 169270 10990000 6274600 4715100 690350 362550 327800 585610 344700 240910 0 0 0 25324 2946 26674 134617;134618;134619;134620;134621;134622;134623;134624;134625;134626;134627 135374;135375;135376;135377;135378;135379;135380;135381 135380 8 NENSEVDTSAGSGSAPSVLHQR SPGKVKDISIDVERRNENSEVDTSAGSGSA TSAGSGSAPSVLHQRNGQTEDVATGPRRAE R N E Q R N 2 1 2 1 0 1 2 2 1 0 1 0 0 0 1 5 1 0 0 2 0 0 22 0 2241.0258 Q8NFC6 Q8NFC6 1477 1498 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 9.8355E-15 91.729 By MS/MS By MS/MS 2 2 0.72524 0.71498 5.6279 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62377 0.67562 3.9467 2 0 Median 0.84264 0.73849 0.51345 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14467000 8874800 5592000 0 0 0 0 0 0 11678000 7381700 4296700 2788400 1493100 1295400 0 0 0 0 0 0 25325 3434 26675 134628;134629;134630;134631 135382;135383;135384 135382 3 NEPLTFAWLR FVCSSLLQFARQYSRNEPLTFAWLRRYIKW RQYSRNEPLTFAWLRRYIKWPLLPPKNIKD R N E L R R 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 1 1 0 0 0 0 10 0 1245.6506 Q8IYB8 Q8IYB8 600 609 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.044206 29.81 By MS/MS By matching By matching By matching 1 1 1 2 1.284 1.0899 26.384 5 Median 0.87887 0.87045 NaN 1 0 Median 1.1816 1.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3287 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6136 1.3893 34.317 2 0 Median 4499800 2065100 2434700 1738300 867790 870530 1730700 809350 921300 0 0 0 535240 214270 320970 0 0 0 495590 173720 321870 25326 3342 26676 134632;134633;134634;134635;134636 135385 135385 1 NEQDAYAINSYTR GSCAENTAKKLNIARNEQDAYAINSYTRSK ARNEQDAYAINSYTRSKAAWEAGKFGNEVI R N E T R S 2 1 2 1 0 1 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 13 0 1543.6903 P24752 P24752 209 221 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 6.586E-52 194.17 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99745 0.95935 21.23 4 Median 0.68331 0.68646 NaN 1 1 Median 1.2708 1.1075 NaN 1 0 Median 0.80712 0.88871 NaN 1 1 Median 1.2327 1.0356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 191230000 105220000 86010000 62243000 36681000 25562000 20436000 7916200 12520000 97085000 55805000 41279000 11470000 4820800 6648900 0 0 0 0 0 0 25327 2126 26677 134637;134638;134639;134640 135386;135387;135388;135389;135390 135386 5 NEQNGAAAHVIAEDVK HKLADIVKINNQLRRNEQNGAAAHVIAEDV EQNGAAAHVIAEDVKLLQFHVATMVDNELP R N E V K L 4 0 2 1 0 1 2 1 1 1 0 1 0 0 0 0 0 0 0 2 0 0 16 0 1664.8118 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 293 308 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.017525 20.354 By MS/MS By MS/MS 1 1 1.125 1.0988 3.3144 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1799 1.0733 NaN 1 0 Median 1.0727 1.1248 NaN 1 0 Median NaN NaN NaN 0 0 Median 6088100 2617400 3470800 0 0 0 0 0 0 0 0 0 1302500 712310 590230 4785600 1905000 2880500 0 0 0 25328 486 26678 134641;134642 135391;135392 135392 2 NEQQLFYISQPGSSVVTSLSPGEAVK VIWGHEHECKIAPTKNEQQLFYISQPGSSV GSSVVTSLSPGEAVKKHVGLLRIKGRKMNM K N E V K K 1 0 1 0 0 3 2 2 0 1 2 1 0 1 2 5 1 0 1 3 0 0 26 0 2764.3919 P49959;F8W7U8 P49959 256 281 MRE11A Double-strand break repair protein MRE11A yes no 2;3 4.379E-13 52.707 By MS/MS By matching 2 1 0.71508 0.76093 10.91 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68086 0.70467 10.862 2 0 Median 0.92173 0.80587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16929000 10056000 6874000 0 0 0 0 0 0 16455000 9798100 6656400 474940 257400 217540 0 0 0 0 0 0 25329 2407 26679 134643;134644;134645 135393;135394;135395;135396;135397 135395 5 NEQQLFYISQPGSSVVTSLSPGEAVKK VIWGHEHECKIAPTKNEQQLFYISQPGSSV SSVVTSLSPGEAVKKHVGLLRIKGRKMNMH K N E K K H 1 0 1 0 0 3 2 2 0 1 2 2 0 1 2 5 1 0 1 3 0 0 27 1 2892.4869 P49959;F8W7U8 P49959 256 282 MRE11A Double-strand break repair protein MRE11A yes no 3 0.0039808 23.223 By MS/MS 1 0.81029 0.92152 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81029 0.92152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2332400 1341700 990710 0 0 0 0 0 0 2332400 1341700 990710 0 0 0 0 0 0 0 0 0 25330 2407 26680 134646 135398 135398 1 NEQSLQEIWDYVK EMKREGKFREKRIKRNEQSLQEIWDYVKRP KRNEQSLQEIWDYVKRPNLRLIGVPESDVE R N E V K R 0 0 1 1 0 2 2 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 13 0 1650.789 Q9UN81 Q9UN81 142 154 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 0.043756 25.659 By matching By MS/MS By matching By matching 1 1 1 1 1.0793 1.0764 12.703 4 Median 1.1533 1.1209 NaN 1 0 Median 1.5511 1.3311 NaN 1 0 Median 0.92915 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.01 1.0028 NaN 1 0 Median NaN NaN NaN 0 0 Median 4438800 2134000 2304800 253570 108250 145320 1565000 713150 851890 2100300 1017500 1082800 0 0 0 519960 295140 224820 0 0 0 25331 4340 26681 134647;134648;134649;134650 135399 135399 1 NESSLASTLK PDKAALNALQPPEFRNESSLASTLKTLLFF PPEFRNESSLASTLKTLLFFTALMITVPIG R N E L K T 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 10 0 1048.5401 Q3ZAQ7 Q3ZAQ7 19 28 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 yes yes 2 0.00035634 83.358 By MS/MS By MS/MS 1 1 1.2062 1.0478 3.3678 2 Median 1.1214 1.0231 NaN 1 0 Median 1.2973 1.073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12185000 6212100 5973200 7446400 3511400 3935100 4738800 2700700 2038100 0 0 0 0 0 0 0 0 0 0 0 0 25332 3015 26682 134651;134652 135400;135401;135402 135402 3 NETGGGEGIEVLK EYQVGQLYSVAEASKNETGGGEGIEVLKNE SKNETGGGEGIEVLKNEPYEKDGEKGQYTH K N E L K N 0 0 1 0 0 0 3 4 0 1 1 1 0 0 0 0 1 0 0 1 0 0 13 0 1301.6463 P48739;A0A0A0MSW4;B3KYB7 P48739 32 44 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 2 4.7933E-07 110.84 By MS/MS By MS/MS By MS/MS 1 1 1 0.91584 0.76892 63.37 3 Median 1.2608 1.1649 NaN 1 0 Median 0.91584 0.76892 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39864 0.33554 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30405000 14424000 15981000 11197000 4061900 7135200 15284000 7532600 7751200 0 0 0 3923900 2829300 1094600 0 0 0 0 0 0 25333 2368 26683 134653;134654;134655 135403;135404;135405 135403 3 NETGGGEGIEVLKNEPYEK EYQVGQLYSVAEASKNETGGGEGIEVLKNE GGEGIEVLKNEPYEKDGEKGQYTHKIYHLK K N E E K D 0 0 2 0 0 0 5 4 0 1 1 2 0 0 1 0 1 0 1 1 0 0 19 1 2061.9855 P48739;A0A0A0MSW4;B3KYB7 P48739 32 50 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 3 1.9287E-13 101.67 By MS/MS By matching 1 2 0.82358 0.80033 70.093 3 Median 0.82358 0.80033 NaN 1 0 Median 1.2789 1.1225 95.199 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17768000 9589700 8178200 12725000 7551600 5173600 5042600 2038100 3004600 0 0 0 0 0 0 0 0 0 0 0 0 25334 2368 26684 134656;134657;134658 135406;135407 135406 2 NETGGGEGVEVLVNEPYEK EYQVGQLYSVAEASKNETGGGEGVEVLVNE GGEGVEVLVNEPYEKDGEKGQYTHKIYHLQ K N E E K D 0 0 2 0 0 0 5 4 0 0 1 1 0 0 1 0 1 0 1 3 0 0 19 0 2018.9433 F5GWE5;Q00169;I3L471;I3L4U7 F5GWE5 32 50 PITPNA Phosphatidylinositol transfer protein alpha isoform yes no 2 0.047148 20.106 By MS/MS By matching 1 1 0.71397 0.64725 6.5432 2 Median 0.63895 0.61798 NaN 1 0 Median 0.7978 0.6779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4097300 2392700 1704600 3666600 2217000 1449700 430640 175750 254890 0 0 0 0 0 0 0 0 0 0 0 0 25335 997 26685 134659;134660 135408 135408 1 NETIAQEDKIK AGPNSESMIFETTTKNETIAQEDKIKLLKA TTTKNETIAQEDKIKLLKAAFLQYCRKDLG K N E I K L 1 0 1 1 0 1 2 0 0 2 0 2 0 0 0 0 1 0 0 0 0 0 11 1 1287.667 Q8WUM0 Q8WUM0 510 520 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.013043 73.985 By MS/MS 1 0.81741 0.76624 NaN 1 Median NaN NaN NaN 0 0 Median 0.81741 0.76624 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1398800 702770 696050 0 0 0 1398800 702770 696050 0 0 0 0 0 0 0 0 0 0 0 0 25336 3492 26686 134661 135409 135409 1 NETSAPFK PTSGSKEKTKVEATKNETSAPFKERPTPSL TKVEATKNETSAPFKERPTPSLNNNCTTSE K N E F K E 1 0 1 0 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 8 0 892.42905 P07814;V9GYZ6 P07814 726 733 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.025786 42.396 By MS/MS 1 0.9439 0.83105 NaN 1 Median NaN NaN NaN 0 0 Median 0.9439 0.83105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1682500 757510 925040 0 0 0 1682500 757510 925040 0 0 0 0 0 0 0 0 0 0 0 0 25337 1892 26687 134662 135410 135410 1 NETVDVEDIVTWLK GRSKSSLKTLFILFRNETVDVEDIVTWLKR RNETVDVEDIVTWLKRHCDVLAVPVKVTDR R N E L K R 0 0 1 2 0 0 2 0 0 1 1 1 0 0 0 0 2 1 0 3 0 0 14 0 1659.8356 Q9NUD5 Q9NUD5 261 274 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2 0.00041385 70.977 By MS/MS By matching 1 1 1.0139 0.96153 27.391 2 Median NaN NaN NaN 0 0 Median 1.3568 1.167 NaN 1 0 Median 0.7576 0.79223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2076600 986450 1090100 0 0 0 1703300 787590 915710 373260 198870 174390 0 0 0 0 0 0 0 0 0 25338 4114 26688 134663;134664 135411;135412 135411 2 NETYNSHPLLVK TFPYQHRYRLYGQWKNETYNSHPLLVKVKA QWKNETYNSHPLLVKVKAQTIDRAKYIMKR K N E V K V 0 0 2 0 0 0 1 0 1 0 2 1 0 0 1 1 1 0 1 1 0 0 12 0 1413.7252 Q8NI27;A0A0C4DG98 Q8NI27 529 540 THOC2 THO complex subunit 2 yes no 2;3 2.0144E-07 121.6 By MS/MS By MS/MS By matching 3 3 1 0.78233 0.6705 18.004 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83804 0.92279 20.255 3 2 Plateau 0.82665 0.74801 22.203 3 0 Median NaN NaN NaN 0 0 Median 0.78233 0.6705 NaN 1 0 Median 57947000 31247000 26701000 0 0 0 0 0 0 45259000 24736000 20523000 11309000 5781700 5526800 0 0 0 1379800 729300 650450 25339 3448 26689 134665;134666;134667;134668;134669;134670;134671 135413;135414;135415;135416;135417;135418;135419;135420;135421;135422 135416 10 NEVDMQVLHLLGPK EARAVLKWADGKMIKNEVDMQVLHLLGPKL KNEVDMQVLHLLGPKLEADLEKKFKVAKAR K N E P K L 0 0 1 1 0 1 1 1 1 0 3 1 1 0 1 0 0 0 0 2 0 0 14 0 1591.8392 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQT0;C9J165;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQL2;A0A0U1RR66;A0A0U1RRJ7;A0A0U1RQJ6 P47897 167 180 QARS Glutamine--tRNA ligase yes no 2 0.00037473 72.006 By MS/MS By MS/MS 2 1 1.0314 0.90193 26.834 3 Median 1.0783 1.0782 35.039 2 0 Median 1.0314 0.90193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7525400 3710400 3815100 2715300 1241600 1473700 4810100 2468700 2341300 0 0 0 0 0 0 0 0 0 0 0 0 25340 2356 26690 134672;134673;134674 135423;135424 135424 2 NEVDSTLTFR NKCGPMVLDALIKIKNEVDSTLTFRRSCRE LIKIKNEVDSTLTFRRSCREGICGSCAMNI K N E F R R 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 10 0 1180.5724 P21912;A0A087WWT1;A0A087WXX8 P21912 81 90 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 2 0.042746 30.254 By MS/MS 1 1.5667 1.3327 NaN 1 Median NaN NaN NaN 0 0 Median 1.5667 1.3327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1263900 415410 848500 0 0 0 1263900 415410 848500 0 0 0 0 0 0 0 0 0 0 0 0 25341 2093 26691 134675 135425 135425 1 NEVLMVNIGSLSTGGR TEGDKKAAKVQKLSKNEVLMVNIGSLSTGG EVLMVNIGSLSTGGRVSAVKADLGKIVLTN K N E G R V 0 1 2 0 0 0 1 3 0 1 2 0 1 0 0 2 1 0 0 2 0 0 16 0 1645.8458 P41091;Q2VIR3 P41091 401 416 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 3.7221E-08 141.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1.0917 1.0544 28.464 9 Median 1.0987 1.0875 2.0052 2 0 Median 0.84597 0.72646 25.81 2 0 Median 1.304 1.2826 42.228 3 0 Median 1.2311 1.0544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0242 0.83197 NaN 1 0 Median 37387000 16174000 21213000 4215400 1962200 2253200 3638000 1931600 1706500 21432000 8460700 12972000 7588900 3587200 4001800 0 0 0 512460 232510 279950 25342 2295 26692;26693 134676;134677;134678;134679;134680;134681;134682;134683;134684 135426;135427;135428;135429;135430;135431;135432;135433;135434 135429 1047 9 NEVQSLNQEMASLLQR SHELSNLRLENQLLRNEVQSLNQEMASLLQ EVQSLNQEMASLLQRSKETQEELNKARARV R N E Q R S 1 1 2 0 0 3 2 0 0 0 3 0 1 0 0 2 0 0 0 1 0 0 16 0 1858.9207 Q8TBA6 Q8TBA6 236 251 GOLGA5 Golgin subfamily A member 5 yes yes 2 1.6145E-10 113.77 By MS/MS 1 0.77922 0.6888 NaN 1 Median NaN NaN NaN 0 0 Median 0.77922 0.6888 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1280100 584990 695070 0 0 0 1280100 584990 695070 0 0 0 0 0 0 0 0 0 0 0 0 25343 3459 26694 134685 135435 135435 1 NEVSFVIHNLPVLAK FGILGHAQNLAKQQRNEVSFVIHNLPVLAK NEVSFVIHNLPVLAKMAAVSKACGNMFGLM R N E A K M 1 0 2 0 0 0 1 0 1 1 2 1 0 1 1 1 0 0 0 3 0 0 15 0 1678.9406 P49903 P49903 284 298 SEPHS1 Selenide, water dikinase 1 yes yes 2 0.0005545 48.44 By matching By MS/MS By MS/MS 1 1 1 1.022 0.90014 6.4992 3 Median 1.0233 0.99244 NaN 1 0 Median 1.022 0.87746 NaN 1 0 Median 0.80921 0.90014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7250600 3527500 3723000 1347500 682970 664490 3801900 1782600 2019300 2101100 1061900 1039200 0 0 0 0 0 0 0 0 0 25344 2404 26695 134686;134687;134688 135436;135437;135438 135437 3 NEVTVELR FKNKGRDVETMRRHRNEVTVELRKNKRDEH ETMRRHRNEVTVELRKNKRDEHLLKKRNVP R N E L R K 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 958.50836 O00505 O00505 30 37 KPNA3 Importin subunit alpha-4 yes yes 2 0.027018 61.999 By MS/MS By MS/MS 1 1 0.42139 0.40024 68.523 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61767 0.64975 NaN 1 1 Median 0.28749 0.24654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5530600 3609300 1921300 0 0 0 0 0 0 2069000 1258500 810550 3461600 2350800 1110700 0 0 0 0 0 0 25345 1469 26696 134689;134690 135439;135440 135439 2 NEVVVELR FKNKGRDLETMRRQRNEVVVELRKNKRDEH ETMRRQRNEVVVELRKNKRDEHLLKRRNVP R N E L R K 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 8 0 956.5291 O00629 O00629 30 37 KPNA4 Importin subunit alpha-3 yes yes 2 0.0063081 83.265 By MS/MS By MS/MS By MS/MS 1 1 1 0.97048 0.81703 17.787 3 Median NaN NaN NaN 0 0 Median 0.97048 0.81703 NaN 1 1 Median 0.76046 0.76392 NaN 1 1 Median 1.2437 1.0691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21588000 9981200 11607000 0 0 0 9187800 3873200 5314600 10255000 5559400 4695600 2145300 548600 1596700 0 0 0 0 0 0 25346 1475 26697 134691;134692;134693 135441;135442;135443 135441 3 NEVVVELRK FKNKGRDLETMRRQRNEVVVELRKNKRDEH TMRRQRNEVVVELRKNKRDEHLLKRRNVPH R N E R K N 0 1 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 9 1 1084.6241 O00629 O00629 30 38 KPNA4 Importin subunit alpha-3 yes yes 2 0.0071019 58.981 By MS/MS By MS/MS 2 1 1.2975 1.3069 17.685 3 Median 1.2416 1.2551 5.7189 2 0 Median NaN NaN NaN 0 0 Median 1.5201 1.6912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5975300 2434300 3541000 4120000 1767000 2353000 0 0 0 1855300 667280 1188000 0 0 0 0 0 0 0 0 0 25347 1475 26698 134694;134695;134696 135444;135445;135446;135447 135446 4 NFAADHFNQEILPVFLNANR EGAKYLKRKDIESIRNFAADHFNQEILPVF HFNQEILPVFLNANRNWNSPVANFIMESQR R N F N R N 3 1 4 1 0 1 1 0 1 1 2 0 0 3 1 0 0 0 0 1 0 0 20 0 2329.1604 Q6PI48;A0A3B3ITS3;A0A3B3ITK9 Q6PI48 389 408 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 7.7472E-09 67.43 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0017 0.94386 21.955 4 Median 0.77583 0.76128 NaN 1 1 Median 1.166 1.0104 NaN 1 0 Median 0.86063 0.88171 NaN 1 0 Median 1.5183 1.2762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14375000 7453300 6921500 4006400 2294800 1711600 2418700 1106600 1312000 7302100 3820600 3481500 647580 231180 416400 0 0 0 0 0 0 25348 3171 26699 134697;134698;134699;134700 135448;135449;135450;135451;135452;135453 135452 6 NFAELAR IVLELYWKHAPKTCKNFAELARRGYYNGTK KHAPKTCKNFAELARRGYYNGTKFHRIIKD K N F A R R 2 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 819.4239 Q9Y3C6 Q9Y3C6 38 44 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 2 0.011573 79.939 By MS/MS By MS/MS By matching 1 1 1 1.1401 1.1158 6.99 3 Median 1.1269 1.1158 NaN 1 0 Median 1.2623 1.0471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1401 1.204 NaN 1 0 Median NaN NaN NaN 0 0 Median 10126000 4594300 5532000 4937500 2249300 2688200 4280700 1896500 2384200 0 0 0 0 0 0 908070 448530 459550 0 0 0 25349 4418 26700 134701;134702;134703 135454;135455;135456;135457 135457 4 NFAEPGSEVYLR LMAHNGWVMGDDPLRNFAEPGSEVYLRREL PLRNFAEPGSEVYLRRELICWGDSVKLRYG R N F L R R 1 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 1 1 0 0 12 0 1380.6674 P35573 P35573 470 481 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 6.9401E-06 119.68 By MS/MS By MS/MS By matching 1 1 1 0.84681 0.79777 53.223 3 Median 0.84681 0.79777 NaN 1 0 Median 1.052 0.89654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34841 0.33829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12205000 6303900 5901300 7888600 4259800 3628700 3849400 1694300 2155100 0 0 0 467310 349810 117500 0 0 0 0 0 0 25350 2243 26701 134704;134705;134706 135458;135459 135458 2 NFAFLEFR APGNPVLAVQINQDKNFAFLEFRSVDETTQ VQINQDKNFAFLEFRSVDETTQAMAFDGII K N F F R S 1 1 1 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 8 0 1042.5236 P26368;K7ENG2 P26368 196 203 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2 0.0046696 80.229 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 3 3 2 1.1228 1.063 10.29 14 Median 1.0622 1.0355 NaN 1 0 Median 1.3276 1.1826 NaN 1 0 Median 1.0884 1.0784 10.796 4 0 Median 1.1971 1.022 14.857 3 0 Median 0.97994 1.0328 10.7 3 0 Median 1.2971 1.0877 3.1229 2 0 Median 122870000 57406000 65459000 409390 191400 217990 374910 137600 237310 63716000 28827000 34889000 52815000 25612000 27203000 4480100 2155200 2325000 1070600 483280 587340 25351 2143 26702 134707;134708;134709;134710;134711;134712;134713;134714;134715;134716;134717;134718;134719;134720 135460;135461;135462;135463;135464;135465;135466;135467 135463 8 NFAQLTVSGSR ASDERGIQVVREKVKNFAQLTVSGSRSDGK EKVKNFAQLTVSGSRSDGKPCPPFKIVILD K N F S R S 1 1 1 0 0 1 0 1 0 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1178.6044 P35249;C9JZI1;C9J8M3;C9JTT7 P35249 125 135 RFC4 Replication factor C subunit 4 yes no 2 2.708E-05 123.35 By MS/MS By MS/MS 1 1 0.11489 0.10388 98.046 2 Median 0.20646 0.20779 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.063928 0.051933 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152770000 140290000 12479000 92067000 82480000 9586800 0 0 0 0 0 0 60707000 57815000 2892500 0 0 0 0 0 0 25352 2237 26703 134721;134722 135468;135469 135468 2 NFATSLYSMIK RSEIDLFNIRKEFRKNFATSLYSMIKGDTS EFRKNFATSLYSMIKGDTSGDYKKALLLLC K N F I K G 1 0 1 0 0 0 0 0 0 1 1 1 1 1 0 2 1 0 1 0 0 0 11 0 1273.6377 P08758;D6RBL5;D6RBE9 P08758 291 301 ANXA5 Annexin A5;Annexin yes no 2 0.00070215 64.297 By MS/MS By MS/MS By matching 2 1 1 1.0062 0.89579 12.236 4 Median 0.91638 0.84631 7.7574 2 0 Median 1.0724 0.89755 NaN 1 0 Median 1.0683 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 156440000 76634000 79809000 112970000 55849000 57121000 43229000 20670000 22559000 242990 114730 128260 0 0 0 0 0 0 0 0 0 25353 1909 26704 134723;134724;134725;134726 135470;135471;135472;135473 135472 4 NFDEILR KKLKLSILYPATTGRNFDEILRVVISLQLT LYPATTGRNFDEILRVVISLQLTAEKRVAT R N F L R V 0 1 1 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 905.46068 P30041 P30041 156 162 PRDX6 Peroxiredoxin-6 yes yes 2 0.0046223 99.919 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 1 1 1.2428 1.1606 8.2592 10 Median 1.1911 1.1426 4.5368 3 0 Median 1.3618 1.1421 6.8112 3 0 Median 1.2419 1.2255 0.30725 2 0 Median 1.4308 1.1818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1714 0.95027 NaN 1 0 Median 186180000 82927000 103250000 137270000 61984000 75288000 31094000 12814000 18280000 15708000 7210800 8497100 1053700 407220 646440 0 0 0 1053400 511300 542060 25354 2179 26705 134727;134728;134729;134730;134731;134732;134733;134734;134735;134736 135474;135475;135476;135477;135478;135479;135480;135481 135476 8 NFDFEGSLSPVIAPK MNMMGYNTDRLAWTRNFDFEGSLSPVIAPK NFDFEGSLSPVIAPKKARPSETGSDDDWEY R N F P K K 1 0 1 1 0 0 1 1 0 1 1 1 0 2 2 2 0 0 0 1 0 0 15 0 1619.8195 Q9H1A4;H0Y564 Q9H1A4 680 694 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.00034921 64.82 By MS/MS 1 0.74564 0.83088 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74564 0.83088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4135800 2298100 1837700 0 0 0 0 0 0 4135800 2298100 1837700 0 0 0 0 0 0 0 0 0 25355 3933 26706 134737 135482;135483 135483 2 NFDKLNVR KVAKLDTSQWPLLLKNFDKLNVRTTHYTPL QWPLLLKNFDKLNVRTTHYTPLACGSNPLK K N F V R T 0 1 2 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 1 1004.5403 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 58 65 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.033656 68.422 By matching By MS/MS 1 1 1.0417 1.1173 28.719 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82357 0.91194 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3175 1.3688 NaN 1 0 Median NaN NaN NaN 0 0 Median 3245300 1043800 2201400 0 0 0 0 0 0 827910 441640 386270 0 0 0 2417400 602210 1815200 0 0 0 25356 1634 26707 134738;134739 135484 135484 1 NFDLRPGVIVR TSQKSERELLEIVKKNFDLRPGVIVRDLDL IVKKNFDLRPGVIVRDLDLKKPIYQRTAAY K N F V R D 0 2 1 1 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 2 0 0 11 1 1284.7303 P31153;Q00266 P31153 352 362 MAT2A;MAT1A S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1 yes no 2;3 0.00011995 72.643 By MS/MS By MS/MS 1 2 1.0014 0.93519 4.0435 3 Median 0.87548 0.92115 NaN 1 0 Median 1.0325 0.96427 4.3302 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137070000 64116000 72959000 39552000 20210000 19342000 97522000 43905000 53617000 0 0 0 0 0 0 0 0 0 0 0 0 25357 2202 26708 134740;134741;134742 135485;135486;135487;135488 135485 4 NFDVGHVPIR KGVVHDDMECSHYMKNFDVGHVPIRLPRTK SHYMKNFDVGHVPIRLPRTKHLLNVINENF K N F I R L 0 1 1 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1152.604 P50579;F8VRR3;F8VQZ7 P50579 386 395 METAP2 Methionine aminopeptidase 2 yes no 2 0.001652 81.548 By MS/MS By MS/MS 1 1 0.63433 0.59811 81.422 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0258 1.0637 NaN 1 1 Median 0.39227 0.33631 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8223700 4814800 3408800 0 0 0 0 0 0 4194000 1890500 2303600 4029600 2924400 1105300 0 0 0 0 0 0 25358 2418 26709 134743;134744 135489;135490 135490 2 NFEALNAR LSPMQKKYYKYILTRNFEALNARGGGNQVS YKYILTRNFEALNARGGGNQVSLLNVVMDL R N F A R G 2 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 933.46683 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 993 1000 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00063083 134.85 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1 2 1.0042 1.0018 20.724 9 Median 0.91955 0.93034 NaN 1 0 Median 0.85551 0.73582 NaN 1 0 Median 1.1347 1.2513 18.924 2 1 Median 1.0272 0.89947 23.127 2 0 Median 0.79918 0.82015 NaN 1 0 Median 1.2514 1.0245 3.1742 2 0 Median 75788000 34236000 41552000 921930 496430 425500 1735500 853230 882280 25976000 12375000 13601000 7936600 3972700 3963900 12445000 5365000 7079900 26774000 11174000 15600000 25359 246 26710 134745;134746;134747;134748;134749;134750;134751;134752;134753;134754 135491;135492;135493;135494;135495;135496;135497;135498 135491 8 NFEDSSPETLEAHK LIKMIVKNYAYKPSKNFEDSSPETLEAHKI KNFEDSSPETLEAHKIKMAFFTYPTLTEIC K N F H K I 1 0 1 1 0 0 3 0 1 0 1 1 0 1 1 2 1 0 0 0 0 0 14 0 1602.7162 Q9UI26;F8WDV0 Q9UI26 338 351 IPO11 Importin-11 yes no 3 0.063225 18.833 By MS/MS 1 1.1873 1.1705 NaN 1 Median 1.1873 1.1705 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3557200 1364200 2193000 3557200 1364200 2193000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25360 4288 26711 134755 135499 135499 1 NFEDVAFDEK PEDWDKQPVKVLVGKNFEDVAFDEKKNVFV VLVGKNFEDVAFDEKKNVFVEFYAPWCGHC K N F E K K 1 0 1 2 0 0 2 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 10 0 1212.5299 P07237;H7BZ94;H0Y3Z3 P07237 376 385 P4HB Protein disulfide-isomerase yes no 2 0.00048844 73.985 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2903 1.3188 7.4609 5 Linear 1.335 1.252 10.245 2 0 Median 1.4982 1.2685 NaN 1 0 Median 1.228 1.2057 NaN 1 0 Median 1.2903 1.1107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58415000 24338000 34077000 31693000 13073000 18620000 16689000 6517000 10172000 8611900 4152900 4459000 1421300 595710 825640 0 0 0 0 0 0 25361 1883 26712 134756;134757;134758;134759;134760 135500;135501;135502;135503;135504 135504 5 NFEDVAFDEKK PEDWDKQPVKVLVGKNFEDVAFDEKKNVFV LVGKNFEDVAFDEKKNVFVEFYAPWCGHCK K N F K K N 1 0 1 2 0 0 2 0 0 0 0 2 0 2 0 0 0 0 0 1 0 0 11 1 1340.6248 P07237;H7BZ94;H0Y3Z3 P07237 376 386 P4HB Protein disulfide-isomerase yes no 2;3 0.00018611 142 By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 1.3569 1.2951 18.364 11 Median 1.1432 1.0612 14.175 4 1 Median 1.52 1.4228 9.3909 4 1 Median 1.2412 1.2983 14.376 2 1 Median 1.6472 1.6465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173350000 75316000 98039000 125800000 56836000 68968000 33070000 12540000 20529000 13578000 5581200 7996900 903010 358380 544630 0 0 0 0 0 0 25362 1883 26713 134761;134762;134763;134764;134765;134766;134767;134768;134769;134770;134771 135505;135506;135507;135508;135509;135510;135511;135512;135513;135514;135515 135506 11 NFEHLIPDAPELIHDFLVNEK YVRRNAVLAIYTIYRNFEHLIPDAPELIHD PDAPELIHDFLVNEKDASCKRNAFMMLIHA R N F E K D 1 0 2 2 0 0 3 0 2 2 3 1 0 2 2 0 0 0 0 1 0 0 21 0 2489.2591 P53618;E9PP73 P53618 165 185 COPB1 Coatomer subunit beta yes no 3 2.8004E-14 91.337 By MS/MS 2 0.7263 0.63941 4.3023 2 Median NaN NaN NaN 0 0 Median 0.7263 0.63941 4.3023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10587000 5622200 4964700 0 0 0 10587000 5622200 4964700 0 0 0 0 0 0 0 0 0 0 0 0 25363 2472 26714 134772;134773 135516;135517 135517 2 NFEHLNSDFDR PSFNSQEIQVLRVVKNFEHLNSDFDRYLLL RVVKNFEHLNSDFDRYLLLMDLQDRNEKLF K N F D R Y 0 1 2 2 0 0 1 0 1 0 1 0 0 2 0 1 0 0 0 0 0 0 11 0 1392.6058 P48163 P48163 61 71 ME1 NADP-dependent malic enzyme yes yes 3 0.030819 21.23 By matching By MS/MS 1 1 1.2195 1.1173 29.232 2 Median 1.4197 1.3738 NaN 1 0 Median 1.0476 0.90865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9643800 4927100 4716700 5782000 2863900 2918100 3861800 2063100 1798600 0 0 0 0 0 0 0 0 0 0 0 0 25364 2359 26715 134774;134775 135518 135518 1 NFESLSEAFSVASAAAVLSHNR EDQVIQLMNAIFSKKNFESLSEAFSVASAA AFSVASAAAVLSHNRYHVPVVVVPEGSASD K N F N R Y 5 1 2 0 0 0 2 0 1 0 2 0 0 2 0 5 0 0 0 2 0 0 22 0 2306.1291 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 245 266 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 3 7.2277E-07 41.136 By MS/MS By MS/MS 2 2 1.0467 1.0326 10.504 4 Median 1.0467 1.0546 5.7064 2 0 Median 1.1058 0.95328 14.015 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466500 1970700 2495800 3427600 1566300 1861300 1039000 404460 634500 0 0 0 0 0 0 0 0 0 0 0 0 25365 1854 26716 134776;134777;134778;134779 135519;135520;135521;135522;135523 135520 5 NFEWVAER DLKEVTPEGLQMVKKNFEWVAERVELLLKS GLQMVKKNFEWVAERVELLLKSESQCRVVV K N F E R V 1 1 1 0 0 0 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 8 0 1049.493 P22234;E9PBS1;D6RF62 P22234 248 255 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2 0.0035922 86.833 By MS/MS By MS/MS By matching 2 2 1 1.2127 1.0984 8.5079 5 Median 1.0886 1.0563 5.536 2 0 Median 1.2578 1.0709 6.1066 2 0 Median 1.2127 1.2552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33836000 15326000 18510000 23641000 10899000 12742000 9436200 4090300 5345900 758900 337190 421710 0 0 0 0 0 0 0 0 0 25366 909 26717 134780;134781;134782;134783;134784 135524;135525;135526;135527 135525 4 NFFLTNR VPEELSGQTNIHLSKNFFLTNRARERSDTF QTNIHLSKNFFLTNRARERSDTFINLREVL K N F N R A 0 1 2 0 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 910.4661 P17655 P17655 451 457 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.0022322 114.59 By MS/MS By matching By matching 2 1 1 1.1452 1.0641 8.4662 4 Median 1.1452 1.0965 0.78105 2 0 Median 1.1983 1.0384 NaN 1 0 Median 0.86526 0.91656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18263000 8500200 9762900 12858000 5957200 6900600 3618600 1683900 1934700 1786600 859020 927590 0 0 0 0 0 0 0 0 0 25367 2045 26718 134785;134786;134787;134788 135528;135529 135529 2 NFFNELSHK VLLIDPEPQIAALAKNFFNELSHKGNAIYN IAALAKNFFNELSHKGNAIYNLLPDIISRL K N F H K G 0 0 2 0 0 0 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 0 9 0 1134.5458 Q15021 Q15021 1151 1159 NCAPD2 Condensin complex subunit 1 yes yes 2 0.010372 48.283 By MS/MS 1 1.1853 1.148 NaN 1 Median 1.1853 1.148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9527900 4218800 5309100 9527900 4218800 5309100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25368 2915 26719 134789 135530 135530 1 NFFNPPIISR DKIFEGNNNVRGHVKNFFNPPIISRFIRII RGHVKNFFNPPIISRFIRIIPKTWNQSIAL K N F S R F 0 1 2 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 0 10 0 1203.64 CON__Q28107;A0A0A0MRJ7;P12259 CON__Q28107 2177 2186 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 0.0022064 76.827 By MS/MS 1 0.29024 0.29272 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29024 0.29272 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2612400 1986800 625610 0 0 0 0 0 0 2612400 1986800 625610 0 0 0 0 0 0 0 0 0 + 25369 772 26720 134790 135531 135531 1 NFFVNYR AISDVIGNKSVVQVKNFFVNYRRRFNIDEV NKSVVQVKNFFVNYRRRFNIDEVLQEWEAE K N F Y R R 0 1 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 7 0 958.4661 Q9UKL0;Q9P2K3;H0YF22 Q9UKL0 422 428 RCOR1;RCOR3 REST corepressor 1;REST corepressor 3 yes no 2 0.03302 48.504 By MS/MS By matching 1 1 1.2098 1.1124 15.317 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0003 0.99818 NaN 1 0 Median 1.4632 1.2396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14448000 7318200 7130100 0 0 0 0 0 0 14032000 7157400 6874100 416840 160800 256040 0 0 0 0 0 0 25370 4312 26721 134791;134792 135532 135532 1 NFGASLLLPGLK HCLAKKTDFSWEEERNFGASLLLPGLKQKN EERNFGASLLLPGLKQKNSVGFSSQLYGYA R N F L K Q 1 0 1 0 0 0 0 2 0 0 4 1 0 1 1 1 0 0 0 0 0 0 12 0 1228.718 G5EA06;Q92552;D6RH20;D6RJC7 G5EA06 147 158 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.00062718 65.305 By MS/MS By matching 1 1 1.1461 1.0115 10.013 2 Median 1.0088 0.9424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.302 1.0858 NaN 1 0 Median 7968000 3905700 4062400 7449500 3730900 3718600 0 0 0 0 0 0 0 0 0 0 0 0 518540 174770 343760 25371 1131 26722 134793;134794 135533 135533 1 NFGDQPDIR PSGVLICSENYITYKNFGDQPDIRCPIPRR NYITYKNFGDQPDIRCPIPRRRNDLDDPER K N F I R C 0 1 1 2 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 9 0 1060.4938 Q15393 Q15393 260 268 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.011134 80.676 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.83256 0.72489 10.644 3 Median NaN NaN NaN 0 0 Median 0.85062 0.68092 NaN 1 0 Median 0.79247 0.83795 NaN 1 0 Median 0.83256 0.72489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28847000 13530000 15317000 0 0 0 18415000 7485000 10930000 8364000 5037800 3326200 2067900 1007200 1060700 0 0 0 0 0 0 25372 2946 26723 134795;134796;134797;134798;134799 135534;135535;135536;135537;135538;135539 135538 4 NFGEDMDDER ELGARAKEFTNVYIKNFGEDMDDERLKDLF NVYIKNFGEDMDDERLKDLFGKFGPALSVK K N F E R L 0 1 1 3 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 10 0 1226.451 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YBN4 P11940 197 206 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 0.0003619 100.02 By MS/MS By MS/MS By matching By MS/MS 4 5 2 4 1.0505 0.91651 19.156 15 Median 0.97467 0.95426 10.257 4 0 Median 1.0498 0.90719 7.4199 5 1 Median 1.205 1.2691 48.14 2 0 Median 1.1751 0.99632 7.4289 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51715000 24500000 27215000 12332000 6234500 6097100 30305000 14205000 16100000 3123500 1329400 1794100 5955600 2731000 3224600 0 0 0 0 0 0 25373 1973 26724;26725 134800;134801;134802;134803;134804;134805;134806;134807;134808;134809;134810;134811;134812;134813;134814 135540;135541;135542;135543;135544;135545;135546;135547;135548;135549 135542 750 10 NFGEDMDDERLK ELGARAKEFTNVYIKNFGEDMDDERLKDLF YIKNFGEDMDDERLKDLFGKFGPALSVKVM K N F L K D 0 1 1 3 0 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 12 1 1467.63 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YBN4 P11940 197 208 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 3 0.00037777 56.087 By MS/MS By matching By matching By matching By matching By matching 2 1 1 1 1 1 0.97571 0.91506 35.668 7 Median 0.94041 0.95466 5.9916 2 0 Median 1.1548 1.0537 NaN 1 0 Median 1.3842 1.4715 NaN 1 0 Median 0.97571 0.89463 NaN 1 0 Median 0.72309 0.80291 NaN 1 0 Median 0.51194 0.4523 NaN 1 0 Median 21889000 10325000 11564000 8859700 4352500 4507300 8587500 3913200 4674400 1869600 761490 1108100 916210 442790 473420 1355700 677550 678160 300730 177870 122860 25374 1973 26726 134815;134816;134817;134818;134819;134820;134821 135550 135550 1 NFGEDMDDERLKDLFGK ELGARAKEFTNVYIKNFGEDMDDERLKDLF GEDMDDERLKDLFGKFGPALSVKVMTDESG K N F G K F 0 1 1 4 0 0 2 2 0 0 2 2 1 2 0 0 0 0 0 0 0 0 17 2 2027.9259 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YBN4 P11940 197 213 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 3 0.06116 10.615 By MS/MS By matching By matching 2 1 1 0.68212 0.73539 67.837 4 Median 0.67347 0.73539 17.49 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.252 2.6538 NaN 1 0 Median 0.61581 0.63179 NaN 1 0 Median 12966000 5918900 7046600 11420000 5448900 5970700 0 0 0 0 0 0 0 0 0 1431500 412160 1019400 114360 57835 56527 25375 1973 26727 134822;134823;134824;134825 135551 135551 1 NFGEEVDDESLKELFSQFGK ELGAKAKEFTNVYIKNFGEEVDDESLKELF VDDESLKELFSQFGKTLSVKVMRDPNGKSK K N F G K T 0 0 1 2 0 1 4 2 0 0 2 2 0 3 0 2 0 0 0 1 0 0 20 1 2317.075 B1ANR0;Q13310;H0YCC8;H0Y5F5 B1ANR0 197 216 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 3 0.010003 22.01 By MS/MS By MS/MS By matching 2 2 1 1.0878 1.0649 14.367 5 Median 1.0204 1.0201 23.612 2 0 Median 1.0762 1.026 5.2604 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0878 1.2165 NaN 1 0 Median NaN NaN NaN 0 0 Median 7335100 3262700 4072400 1547200 702700 844520 5089800 2291500 2798200 0 0 0 0 0 0 698120 268440 429680 0 0 0 25376 576;1151 26728 134826;134827;134828;134829;134830 135552;135553 135553 2 NFGFSLQDALSR LPPDEYVVTDPEQEKNFGFSLQDALSRARE QEKNFGFSLQDALSRARERRLLEGYEIYVT K N F S R A 1 1 1 1 0 1 0 1 0 0 2 0 0 2 0 2 0 0 0 0 0 0 12 0 1353.6677 Q14676 Q14676 1978 1989 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 6.1571E-05 94.297 By MS/MS By matching By matching 3 3 1 1.3055 1.2613 18.647 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85473 0.92112 22.046 3 0 Median 1.4985 1.2804 2.2475 3 0 Median NaN NaN NaN 0 0 Median 1.3055 1.147 NaN 1 0 Median 8757000 4033100 4723900 0 0 0 0 0 0 7632900 3559800 4073100 694420 278350 416060 0 0 0 429610 194910 234690 25377 2887 26729 134831;134832;134833;134834;134835;134836;134837 135554;135555;135556;135557 135555 4 NFGIGQDIQPK EAKKVVNPLFEKRPKNFGIGQDIQPKRDLT KRPKNFGIGQDIQPKRDLTRFVKWPRYIRL K N F P K R 0 0 1 1 0 2 0 2 0 2 0 1 0 1 1 0 0 0 0 0 0 0 11 0 1215.6248 P62424;Q5T8U3 P62424 38 48 RPL7A 60S ribosomal protein L7a yes no 2 0.00013635 85.731 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 3 1 1.0133 0.98042 15.229 10 Median 0.97738 0.8804 24.337 3 1 Median 1.0124 0.84476 NaN 1 0 Median 0.97577 0.94082 NaN 1 0 Median 1.2213 1.0204 NaN 1 1 Median 1.0142 1.0425 4.7763 3 1 Median 1.2242 0.97086 NaN 1 0 Median 767170000 376390000 390770000 438940000 217760000 221180000 116050000 55175000 60874000 34514000 17589000 16924000 21138000 9034000 12104000 155430000 76407000 79020000 1101800 430330 671500 25378 2589 26730 134838;134839;134840;134841;134842;134843;134844;134845;134846;134847 135558;135559;135560;135561;135562;135563;135564;135565;135566;135567;135568;135569;135570;135571;135572 135561 15 NFGIWLR VYCGQVFEKSPLRVKNFGIWLRYDSRSGTH EKSPLRVKNFGIWLRYDSRSGTHNMYREYR K N F L R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 904.49192 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 48 54 RPL18A 60S ribosomal protein L18a yes no 2 0.018158 63.642 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 3 1 1 3 3 1.2476 1.1486 17.78 15 Median 1.0214 0.99369 26.41 4 0 Median 1.3773 1.1885 6.794 3 0 Plateau 1.2003 1.1529 NaN 1 0 Median 1.3818 1.1377 NaN 1 0 Median 1.2476 1.2544 12.478 3 0 Median 1.431 1.1486 14.833 3 0 Median 74371000 32975000 41395000 37737000 16906000 20831000 701270 291290 409980 7199000 3178600 4020400 543060 214390 328670 15415000 7073000 8341800 12775000 5312100 7463200 25379 1433 26731 134848;134849;134850;134851;134852;134853;134854;134855;134856;134857;134858;134859;134860;134861;134862 135573;135574;135575;135576;135577 135574 5 NFGLYNER VSEGFEFFCAQSFSKNFGLYNERVGNLTVV CAQSFSKNFGLYNERVGNLTVVGKEPESIL K N F E R V 0 1 2 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1011.4774 P17174 P17174 260 267 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.014185 79.469 By MS/MS By MS/MS 2 1 1.0888 1.0154 6.5057 2 Median 1.0653 1.0632 NaN 1 1 Median 1.1127 0.9697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35092000 16712000 18380000 15003000 7842500 7160200 20089000 8869000 11220000 0 0 0 0 0 0 0 0 0 0 0 0 25380 2038 26732 134863;134864;134865 135578;135579;135580 135579 3 NFGSYVTHETK FDKKYNPTWHCIVGRNFGSYVTHETKHFIY IVGRNFGSYVTHETKHFIYFYLGQVAILLF R N F T K H 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 2 0 1 1 0 0 11 0 1281.599 P63167;Q96FJ2 Q96FJ2 61 71 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic no no 2;3 2.8076E-05 155.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 3 2 1.0984 0.99035 6.95 16 Median 1.0525 0.95574 4.6891 2 0 Median 1.1855 0.98053 4.4125 4 0 Median 0.94009 0.90549 4.2497 4 0 Median 1.2452 1.0133 2.8987 2 0 Median 1.0031 1.0603 2.2636 2 0 Median 1.3331 1.0915 6.6125 2 0 Median 143320000 66711000 76607000 32171000 15291000 16880000 59789000 26618000 33172000 30947000 15862000 15085000 2771700 1135900 1635700 6258600 3098300 3160300 11381000 4706700 6674100 25381 3649;2620 26733 134866;134867;134868;134869;134870;134871;134872;134873;134874;134875;134876;134877;134878;134879;134880;134881;134882 135581;135582;135583;135584;135585;135586;135587;135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598;135599;135600 135589 20 NFGTDPEVTDLVHNTR VGRELLLNLIEYLCKNFGTDPEVTDLVHNT FGTDPEVTDLVHNTRIHLMPSMNPDGYEKS K N F T R I 0 1 2 2 0 0 1 1 1 0 1 0 0 1 1 0 3 0 0 2 0 0 16 0 1813.8595 O75976 O75976 584 599 CPD Carboxypeptidase D yes yes 2;3 1.6079E-05 78.285 By MS/MS By MS/MS 2 2 0.81308 0.72756 77.141 4 Median 0.65449 0.61525 18.354 2 1 Median 1.6754 1.5057 97.497 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32624000 18616000 14008000 24021000 14143000 9877900 8603200 4473200 4129900 0 0 0 0 0 0 0 0 0 0 0 0 25382 1714 26734 134883;134884;134885;134886 135601;135602;135603 135601 3 NFGTVLR NEHIMNVIAIYEVLRNFGTVLRLSPFRFED IAIYEVLRNFGTVLRLSPFRFEDFCAALVS R N F L R L 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 805.44464 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 255 261 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.039453 70.912 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25383 2762 26735 134887 135604 135604 1 NFHQTFATWVK TKVGSPATVTFQQNKNFHQTFATWVKQGQS QQNKNFHQTFATWVKQGQSNSGVVQVQQKV K N F V K Q 1 0 1 0 0 1 0 0 1 0 0 1 0 2 0 0 2 1 0 1 0 0 11 0 1377.683 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;J3QQK4 Q12830 2109 2119 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.00055206 55.718 By MS/MS By matching 2 2 1.0351 1.0537 8.027 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91316 0.99616 9.4716 2 0 Median 1.1841 1.0845 5.6044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20928000 11194000 9733700 0 0 0 0 0 0 20642000 11074000 9568500 285500 120250 165250 0 0 0 0 0 0 25384 2762 26736 134888;134889;134890;134891 135605;135606 135606 2 NFIAQGPYENR SDDLLYLEFLQKFERNFIAQGPYENRTVFE KFERNFIAQGPYENRTVFETLDIGWQLLRI R N F N R T 1 1 2 0 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 11 0 1307.6258 P21281 P21281 461 471 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 2 0.00014272 84.615 By MS/MS By MS/MS By MS/MS 1 1 1 0.83218 0.74177 7.3708 3 Median 0.77918 0.73879 NaN 1 0 Median 0.87972 0.74177 NaN 1 0 Median 0.83218 0.84104 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33950000 18497000 15453000 17782000 10360000 7421800 7479000 4038100 3440800 8689300 4099400 4589900 0 0 0 0 0 0 0 0 0 25385 2086 26737 134892;134893;134894 135607;135608;135609;135610;135611 135607 5 NFILDQCNVYNSGQR QCLSKLVQIASRTKRNFILDQCNVYNSGQR NFILDQCNVYNSGQRRKLLLFKTFSRKVVV R N F Q R R 0 1 3 1 1 2 0 1 0 1 1 0 0 1 0 1 0 0 1 1 0 0 15 0 1826.837 Q1KMD3;H3BQZ7 Q1KMD3 532 546 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 3.2479E-09 121.08 By matching By MS/MS By matching 1 2 1 0.95464 0.97054 37.17 4 Median NaN NaN NaN 0 0 Median 0.63743 0.5592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95464 0.97054 1.1008 2 0 Median 1.6285 1.3738 NaN 1 0 Median 12262000 6370600 5891100 0 0 0 276220 125560 150660 0 0 0 0 0 0 11783000 6155200 5628100 202130 89809 112330 25386 3002 26738 134895;134896;134897;134898 135612;135613;135614 135612 3 NFILDQTNVSAAAQR QCLGKFIEIAARKKRNFILDQTNVSAAAQR NFILDQTNVSAAAQRRKMCLFAGFQRKAVV R N F Q R R 3 1 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1646.8376 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 576 590 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 3.676E-51 215.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 8 9 19 10 1.2318 1.1246 17.515 55 Median 1.2674 1.2311 11.903 5 1 Median 1.3774 1.1905 18.439 5 0 Median 1.1025 1.1212 6.9838 8 3 Median 1.4096 1.2266 15.88 9 1 Median 1.1559 1.169 13.983 18 7 Median 1.267 1.0066 24.174 10 0 Median 2480100000 1150800000 1329300000 233000000 111750000 121240000 57416000 24275000 33141000 771240000 363050000 408200000 100630000 41693000 58936000 1236100000 574150000 661960000 81705000 35884000 45821000 25387 2680 26739 134899;134900;134901;134902;134903;134904;134905;134906;134907;134908;134909;134910;134911;134912;134913;134914;134915;134916;134917;134918;134919;134920;134921;134922;134923;134924;134925;134926;134927;134928;134929;134930;134931;134932;134933;134934;134935;134936;134937;134938;134939;134940;134941;134942;134943;134944;134945;134946;134947;134948;134949;134950;134951;134952;134953;134954 135615;135616;135617;135618;135619;135620;135621;135622;135623;135624;135625;135626;135627;135628;135629;135630;135631;135632;135633;135634;135635;135636;135637;135638;135639;135640;135641;135642;135643;135644;135645;135646;135647;135648;135649;135650;135651;135652;135653;135654;135655;135656;135657;135658;135659;135660;135661;135662;135663;135664;135665;135666;135667;135668;135669;135670;135671;135672;135673;135674;135675;135676;135677;135678;135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692;135693;135694;135695;135696;135697;135698;135699;135700 135621 86 NFILDQTNVSAAAQRR QCLGKFIEIAARKKRNFILDQTNVSAAAQR FILDQTNVSAAAQRRKMCLFAGFQRKAVVV R N F R R K 3 2 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 1 1802.9387 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 576 591 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 2.7474E-05 64.394 By MS/MS 2 1.1181 1.2122 11.054 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1181 1.2122 11.054 2 2 Median NaN NaN NaN 0 0 Median 29571000 12625000 16946000 0 0 0 0 0 0 0 0 0 0 0 0 29571000 12625000 16946000 0 0 0 25388 2680 26740 134955;134956 135701;135702 135701 2 NFIMIKYIGDK N F D K 0 0 1 1 0 0 0 1 0 3 0 2 1 1 0 0 0 0 1 0 0 0 11 1 1340.7162 REV__P55060 yes yes 2 0.073384 36.693 By MS/MS 1 1.1858 1.3419 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1858 1.3419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26939000 12607000 14332000 0 0 0 0 0 0 26939000 12607000 14332000 0 0 0 0 0 0 0 0 0 + 25389 4538 26741 134957 135703;135704 135703 2 NFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K N F A K K 4 0 3 1 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 15 0 1671.8369 P35579;Q5BKV1;B1AH99 P35579 15 29 MYH9 Myosin-9 yes no 2 4.5279E-06 87.363 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 0.94904 0.8753 21.231 7 Median 1.1883 1.2138 31.885 2 0 Median 0.95279 0.8441 NaN 1 0 Median 0.76719 0.85422 NaN 1 0 Median 0.9209 0.83747 NaN 1 0 Median 0.8886 0.93485 9.3078 2 2 Median NaN NaN NaN 0 0 Median 54830000 27177000 27654000 29024000 13975000 15049000 12410000 6143000 6266700 5726700 3102000 2624800 831570 426130 405440 6838700 3530700 3308000 0 0 0 25390 2244 26742 134958;134959;134960;134961;134962;134963;134964 135705;135706;135707;135708;135709;135710;135711;135712;135713;135714;135715;135716 135714 12 NFIQYFHK QYEQQTYQVIPEVIKNFIQYFHKTVSDLID VIPEVIKNFIQYFHKTVSDLIDQKVYELQA K N F H K T 0 0 1 0 0 1 0 0 1 1 0 1 0 2 0 0 0 0 1 0 0 0 8 0 1095.5502 B0QY89;Q9Y262;C9JHP4;C9K0Q7;H7C3A0 B0QY89 97 104 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.052986 50.966 By MS/MS 1 0.96622 0.93956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96622 0.93956 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10874000 5293400 5581000 0 0 0 0 0 0 10874000 5293400 5581000 0 0 0 0 0 0 0 0 0 25391 554 26743 134965 135717 135717 1 NFITAEELR ADQVIASFKVLAGDKNFITAEELRRELPPD VLAGDKNFITAEELRRELPPDQAEYCIARM K N F L R R 1 1 1 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 O43707;F5GXS2;H7C144 O43707 860 868 ACTN4 Alpha-actinin-4 yes no 2 0.0044715 60.59 By MS/MS By MS/MS By matching 1 1 2 1.1135 0.9317 9.4912 4 Median 1.1368 1.0993 NaN 1 0 Median 1.1442 0.95664 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0681 0.89939 1.2567 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16696000 7874900 8821300 4303300 1783500 2519800 10833000 5382700 5450400 0 0 0 1559800 708750 851060 0 0 0 0 0 0 25392 1585 26744 134966;134967;134968;134969 135718;135719;135720 135718 3 NFITAEELRR ADQVIASFKVLAGDKNFITAEELRRELPPD LAGDKNFITAEELRRELPPDQAEYCIARMA K N F R R E 1 2 1 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 1 1247.6622 O43707;F5GXS2;H7C144 O43707 860 869 ACTN4 Alpha-actinin-4 yes no 2;3 0.00048757 85.064 By MS/MS By matching 3 1 1.0474 1.0098 17.13 3 Median 1.0281 1.1422 22.036 2 0 Median 1.0474 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15132000 6451100 8680600 14107000 6023800 8083500 1024400 427310 597060 0 0 0 0 0 0 0 0 0 0 0 0 25393 1585 26745 134970;134971;134972;134973 135721;135722;135723 135722 3 NFKPVVYHGVNLDQTVK EVTITVRLIRSFEHRNFKPVVYHGVNLDQT KPVVYHGVNLDQTVKEFIVFLKQDIPLRTN R N F V K E 0 0 2 1 0 1 0 1 1 0 1 2 0 1 1 0 1 0 1 4 0 0 17 1 1957.0421 Q3KRA6;C9JTA8 Q3KRA6 20 36 C2orf76 UPF0538 protein C2orf76 yes no 3 0.0027259 26.808 By matching By MS/MS 1 1 1.0248 0.95526 17.873 2 Median 0.83986 0.84185 NaN 1 0 Median 1.2504 1.0839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8926900 3986800 4940000 3980200 1876500 2103700 4946700 2110300 2836300 0 0 0 0 0 0 0 0 0 0 0 0 25394 3011 26746 134974;134975 135724;135725 135724 2 NFLELTELK NELKEINTNQEALKRNFLELTELKFILRKT QEALKRNFLELTELKFILRKTQQFFDEMAD R N F L K F 0 0 1 0 0 0 2 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1105.6019 Q93050;K7EM24;K7EN36;K7EPG4 Q93050 121 129 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 2 0.0052417 58.23 By MS/MS By matching By matching By matching 3 2 1 1 1.0203 1.0387 8.9808 7 Median 0.93163 0.93315 1.9828 3 0 Median 1.1962 1.0452 0.88494 2 0 Median 1.0203 1.1301 NaN 1 0 Median 1.2339 1.1653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17782000 8305700 9476400 10945000 5222500 5722300 6279000 2801800 3477300 519710 266090 253620 38484 15308 23177 0 0 0 0 0 0 25395 3576 26747 134976;134977;134978;134979;134980;134981;134982 135726;135727;135728 135726 3 NFLINYYNR FTGVKEVDDFFEQEKNFLINYYNRIKDSCV FFEQEKNFLINYYNRIKDSCVKADKMTRSH K N F N R I 0 1 3 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 0 9 0 1215.6037 Q9Y5X3;Q5QPE5;A0A087WUY5;Q5QPE4 Q9Y5X3 214 222 SNX5 Sorting nexin-5 yes no 2 0.0032096 66.682 By matching By MS/MS By matching 1 1 1 0.95355 0.95691 23.452 3 Median NaN NaN NaN 0 0 Median 0.83501 0.74359 NaN 1 0 Median 0.95355 0.95691 NaN 1 0 Median 1.3571 1.188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5383400 2517500 2865900 0 0 0 379320 181380 197940 4748700 2233200 2515500 255370 102900 152460 0 0 0 0 0 0 25396 4471 26748 134983;134984;134985 135729;135730 135729 2 NFLNAIATDIIHLHSQR LQTWPSTILVVSHDRNFLNAIATDIIHLHS LNAIATDIIHLHSQRLDGYRGDFETFIKSK R N F Q R L 2 1 2 1 0 1 0 0 2 3 2 0 0 1 0 1 1 0 0 0 0 0 17 0 1962.0435 Q9NUQ8 Q9NUQ8 385 401 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 3 0.055864 9.6577 By matching By MS/MS 1 1 1.1583 1.0814 34.749 2 Median 1.3823 1.3827 NaN 1 0 Median 0.97055 0.84585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2252600 1075600 1177100 361570 163400 198170 1891100 912150 978920 0 0 0 0 0 0 0 0 0 0 0 0 25397 4119 26749 134986;134987 135731 135731 1 NFLPILFNLYGQPVAAGDTPAPR CQAEADRAEVSRFAKNFLPILFNLYGQPVA LYGQPVAAGDTPAPRRAVLETIRTYLTITD K N F P R R 3 1 2 1 0 1 0 2 0 1 3 0 0 2 4 0 1 0 1 1 0 0 23 0 2470.3009 Q5JTH9 Q5JTH9 688 710 RRP12 RRP12-like protein yes yes 2;3 2.3843E-11 57.679 By MS/MS By matching By matching By MS/MS 2 1 2 2 0.62534 0.6323 19.682 6 Median 0.51204 0.51056 3.8513 2 1 Median 0.69375 0.60988 NaN 1 0 Median 0.73168 0.75328 19.45 2 0 Median NaN NaN NaN 0 0 Median 0.61651 0.65554 NaN 1 0 Median NaN NaN NaN 0 0 Median 5812000 3120000 2692100 1609400 1072600 536740 253150 146310 106840 264580 149640 114940 0 0 0 3684900 1751400 1933600 0 0 0 25398 3052 26750 134988;134989;134990;134991;134992;134993;134994 135732;135733;135734 135734 3 NFLSTPQFLYR YFFLMFRYPMDLGGRNFLSTPQFLYRWLPS LGGRNFLSTPQFLYRWLPSRRGGVSGFGVP R N F Y R W 0 1 1 0 0 1 0 0 0 0 2 0 0 2 1 1 1 0 1 0 0 0 11 0 1384.7139 B4E1G1;E5RGY0;Q9BUN8 B4E1G1 98 108 DERL1 Derlin-1 yes no 2 1.5106E-13 148.05 By MS/MS By MS/MS By MS/MS 2 3 1 1.1147 0.9584 12.847 5 Median 0.972 0.93562 4.5076 2 0 Median 1.1627 0.94728 1.6505 2 1 Median 1.1147 1.248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55837000 26771000 29066000 30376000 15397000 14979000 23788000 10613000 13175000 1672200 760590 911620 0 0 0 0 0 0 0 0 0 25399 613 26751 134995;134996;134997;134998;134999;135000 135735;135736;135737;135738;135739;135740 135740 6 NFLTSLVAGLSTER KLPQSITNPKLDFFKNFLTSLVAGLSTERT KNFLTSLVAGLSTERTKTSSLESSAVISAF K N F E R T 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 2 2 0 0 1 0 0 14 0 1506.8042 O94822;H7BYG8;S4R3T2 O94822 384 397 LTN1 E3 ubiquitin-protein ligase listerin yes no 2 0.00078971 60.434 By MS/MS By matching By matching By matching 1 1 1 1 1.0651 1.035 21.191 4 Median 1.0828 1.0881 NaN 1 0 Median 1.1063 0.98445 NaN 1 0 Median 1.0477 1.169 NaN 1 0 Median 0.82553 0.72273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1812100 849150 962910 1333000 642710 690300 75969 29134 46835 368390 163430 204960 34702 13886 20816 0 0 0 0 0 0 25400 1727 26752 135001;135002;135003;135004 135741;135742 135741 2 NFLVFQGAVESIAMK YSEELEKLGILIKARNFLVFQGAVESIAMK NFLVFQGAVESIAMKNPKERTALFEEISRS R N F M K N 2 0 1 0 0 1 1 1 0 1 1 1 1 2 0 1 0 0 0 2 0 0 15 0 1652.8596 Q14683;G8JLG1;H0Y7K8 Q14683 132 146 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0011976 42.001 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 0.98228 0.98325 51.945 6 Median 1.013 0.95398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93692 1.0125 NaN 1 0 Median 1.109 0.99854 NaN 1 0 Median 0.5113 0.52033 89.396 2 0 Median 1.1693 0.98746 NaN 1 0 Median 9725900 5068200 4657700 1833900 928450 905470 0 0 0 5678700 2845700 2832900 174800 81487 93316 1796300 1102500 693820 242190 110020 132170 25401 2889 26753 135005;135006;135007;135008;135009;135010 135743;135744;135745;135746;135747 135745 5 NFLVFQGAVESIAMKNPK YSEELEKLGILIKARNFLVFQGAVESIAMK VFQGAVESIAMKNPKERTALFEEISRSGEL R N F P K E 2 0 2 0 0 1 1 1 0 1 1 2 1 2 1 1 0 0 0 2 0 0 18 1 1992.0503 Q14683;G8JLG1;H0Y7K8 Q14683 132 149 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.024676 16.494 By MS/MS By matching 1 1 0.48179 0.52637 52.678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66787 0.76394 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34755 0.36268 NaN 1 0 Median NaN NaN NaN 0 0 Median 2130500 1470400 660080 0 0 0 0 0 0 1371300 927420 443880 0 0 0 759170 542960 216200 0 0 0 25402 2889 26754 135011;135012 135748 135748 1 NFMESTPEPRPNEWEK EDILKHQASISELKRNFMESTPEPRPNEWE FMESTPEPRPNEWEKRRITPLSLQTQGSSH R N F E K R 0 1 2 0 0 0 4 0 0 0 0 1 1 1 3 1 1 1 0 0 0 0 16 1 1989.8891 O43491;Q6ZSX4;H0Y5B0;Q6R5J7;E9PMV8;E9PN54;E9PMG5 O43491 654 669 EPB41L2 Band 4.1-like protein 2 yes no 3 0.00033149 39.005 By MS/MS By matching By MS/MS 1 1 1 0.68545 0.66002 5.0674 3 Median 0.68545 0.71343 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57221 0.64868 NaN 1 0 Median 0.68679 0.66002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21382000 13024000 8358500 5574800 3135800 2439100 0 0 0 14095000 8775300 5319400 1712900 1112900 600060 0 0 0 0 0 0 25403 1573 26755 135013;135014;135015 135749;135750 135750 2 NFMIDTYR GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL EIYLAYRNFMIDTYRLNPQEYLTSTACRRN R N F Y R L 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 8 0 1058.4855 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 467 474 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.0023555 114.78 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 6 3 6 1.2559 1.0672 17.379 19 Median NaN NaN NaN 0 0 Median 1.025 0.90285 NaN 1 0 Median 0.96241 1.0269 5.5119 3 0 Median 1.3297 1.1378 9.0034 6 0 Median 0.91768 0.94833 10.636 3 0 Plateau 1.4103 1.1835 23.143 6 0 Median 102400000 50805000 51591000 0 0 0 989250 509900 479350 70793000 36131000 34661000 13427000 5967500 7459900 13903000 6786100 7117000 3283000 1409700 1873300 25404 3455;3567 26756;26757 135016;135017;135018;135019;135020;135021;135022;135023;135024;135025;135026;135027;135028;135029;135030;135031;135032;135033;135034 135751;135752;135753;135754;135755;135756;135757;135758;135759;135760;135761;135762;135763;135764;135765;135766 135758 1733 16 NFNETFLKR LKQEMNRLFGATNPKNFNETFLKRNSDSLP GATNPKNFNETFLKRNSDSLPHRLSAAKMV K N F K R N 0 1 2 0 0 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 9 1 1167.6037 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 748 756 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.022766 51.854 By MS/MS 1 1.5223 1.5859 NaN 1 Median 1.5223 1.5859 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10363000 4144400 6219000 10363000 4144400 6219000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25405 213 26758 135035 135767 135767 1 NFNIHGTNK QYQKAFQNVFAPRNKNFNIHGTNKHWLIRQ FAPRNKNFNIHGTNKHWLIRQAKTPMTNSS K N F N K H 0 0 3 0 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 9 0 1043.5148 P15586;H7C3P4;F6S8M0;H0YFA9;F5H4C6 P15586 258 266 GNS N-acetylglucosamine-6-sulfatase yes no 2 0.0066328 53.968 By matching By MS/MS 1 2 0.88536 0.81606 27.234 3 Median 0.82814 0.81606 NaN 1 0 Median 1.1348 1.0001 34.753 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3433100 1847000 1586100 340900 196000 144900 3092200 1651000 1441200 0 0 0 0 0 0 0 0 0 0 0 0 25406 2019 26759 135036;135037;135038 135768;135769 135769 2 NFPNAIEHTLQWAR SQDPPEKSIPICTLKNFPNAIEHTLQWARD KNFPNAIEHTLQWARDEFEGLFKQPAENVN K N F A R D 2 1 2 0 0 1 1 0 1 1 1 0 0 1 1 0 1 1 0 0 0 0 14 0 1695.8481 P22314 P22314 636 649 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 3.215E-06 89.013 By MS/MS By MS/MS By MS/MS 4 3 1 1.0949 0.98773 28.778 8 Median 0.92225 0.89981 43.234 4 0 Median 1.1765 0.99539 2.052 3 0 Plateau 1.0421 1.112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61459000 30219000 31240000 36018000 18780000 17238000 20150000 8966000 11184000 5290400 2472500 2817800 0 0 0 0 0 0 0 0 0 25407 2100 26760 135039;135040;135041;135042;135043;135044;135045;135046 135770;135771;135772;135773;135774;135775;135776;135777;135778;135779;135780;135781;135782 135774 13 NFPNEFAK EYMPDVAKCRQWLEKNFPNEFAKLTVENSP CRQWLEKNFPNEFAKLTVENSPKQEAGISE K N F A K L 1 0 2 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 8 0 965.46068 O43583;F8VVL1 O43583 60 67 DENR Density-regulated protein yes no 2 0.014311 51.335 By matching By MS/MS By MS/MS 2 1 2 0.9567 0.85375 49.919 5 Median NaN NaN NaN 0 0 Median 0.61571 0.57084 89.54 2 0 Median 0.9567 0.90032 NaN 1 0 Median 0.98499 0.82064 5.5932 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18572000 9689800 8882500 0 0 0 3490500 2106000 1384500 6603000 3360400 3242500 8478800 4223400 4255500 0 0 0 0 0 0 25408 1575 26761 135047;135048;135049;135050;135051 135783;135784;135785;135786;135787;135788 135785 6 NFQGDLVK DSLKAENLVLSTNLRNFQGDLVKEMQLGLE VLSTNLRNFQGDLVKEMQLGLEEGLVPSLS R N F V K E 0 0 1 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 919.47633 P49454 P49454 1455 1462 CENPF Centromere protein F yes yes 2 0.023493 44.117 By MS/MS 1 1.1883 1.2787 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1883 1.2787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5018200 1954200 3063900 0 0 0 0 0 0 5018200 1954200 3063900 0 0 0 0 0 0 0 0 0 25409 2383 26762 135052 135789 135789 1 NFQLNQDKMNFSTLR KNELLPSHPLELSEKNFQLNQDKMNFSTLR NFQLNQDKMNFSTLRNIQGLFAPLKLQMEF K N F L R N 0 1 3 1 0 2 0 0 0 0 2 1 1 2 0 1 1 0 0 0 0 0 15 1 1854.9047 Q9Y244 Q9Y244 54 68 POMP Proteasome maturation protein yes yes 3 0.00024565 46.3 By MS/MS 1 1.2477 1.2355 NaN 1 Median 1.2477 1.2355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6326500 2944800 3381700 6326500 2944800 3381700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25410 4372 26763 135053 135790 135790 1 NFQNIFPPSATLHLSNIPPSVSEEDLK YGNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF K N F L K V 1 0 3 1 0 1 2 0 1 2 3 1 0 2 4 4 1 0 0 1 0 0 27 0 2993.5135 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20 A0A0U1RRM4 502 528 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 3.481E-21 74.274 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 4 3 3 3 0.52477 0.50478 20.179 15 Median 0.54636 0.52729 6.1683 2 0 Median 0.59426 0.53024 NaN 1 0 Median 0.46063 0.44437 20.948 3 0 Plateau 0.65104 0.55605 0.81071 3 0 Plateau 0.51852 0.49539 5.6532 3 0 Plateau 0.77963 0.66115 34.818 3 0 Plateau 261870000 213780000 48095000 13232000 9512900 3718800 421450 297390 124060 188030000 165460000 22577000 23475000 13906000 9569100 35182000 23718000 11464000 1530200 887080 643100 25411 312 26764 135054;135055;135056;135057;135058;135059;135060;135061;135062;135063;135064;135065;135066;135067;135068;135069;135070 135791;135792;135793;135794;135795;135796;135797;135798;135799;135800;135801;135802;135803;135804;135805;135806;135807;135808 135796 18 NFQNIFPPSATLHLSNIPPSVTVDDLK FSNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVTVDDLKNLFIEAGCSVKAFKF K N F L K N 1 0 3 2 0 1 0 0 1 2 3 1 0 2 4 3 2 0 0 2 0 0 27 0 2963.5393 O95758 O95758 466 492 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 3 4.6361E-05 27.722 By MS/MS 3 0.42747 0.4379 7.1248 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42747 0.4379 7.1248 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9800900 6206400 3594500 0 0 0 0 0 0 9800900 6206400 3594500 0 0 0 0 0 0 0 0 0 25412 1791 26765 135071;135072;135073 135809;135810;135811;135812;135813 135809 5 NFRNPLAK RIEEELGSKAKFAGRNFRNPLAK_______ KAKFAGRNFRNPLAK_______________ R N F A K - 1 1 2 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 8 1 958.53485 P06733;A0A2R8Y6G6 P06733 427 434 ENO1 Alpha-enolase yes no 2 0.0024684 153.15 By MS/MS By MS/MS By matching By matching 3 3 1 1 0.99134 0.91473 13.027 8 Median 1.0627 1.0492 9.7824 3 0 Plateau 1.0264 0.90623 14.823 3 0 Median 0.70756 0.74208 NaN 1 0 Median 0.96499 0.92331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152020000 72467000 79552000 99517000 47586000 51931000 42476000 19801000 22675000 660780 326250 334530 9364700 4753700 4611000 0 0 0 0 0 0 25413 1873 26766 135074;135075;135076;135077;135078;135079;135080;135081 135814;135815;135816;135817;135818;135819;135820;135821;135822;135823;135824 135821 11 NFSDEIR PLNQESVEERVAAFRNFSDEIRHNLSEVLL EERVAAFRNFSDEIRHNLSEVLLATMNILF R N F I R H 0 1 1 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 879.40865 Q8N1F7;H3BVG0 Q8N1F7 736 742 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.020057 60.788 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0435 0.98627 5.9195 4 Median 0.97638 0.97341 NaN 1 0 Median 1.1152 0.99931 NaN 1 0 Median 0.82318 0.88261 NaN 1 0 Median 1.1609 1.0001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6937500 3386400 3551200 748990 378570 370420 1053300 418510 634780 3671500 1927400 1744100 1463800 661860 801890 0 0 0 0 0 0 25414 3356 26767 135082;135083;135084;135085 135825;135826;135827;135828 135825 4 NFSDNQLQEGK GDPNWFPKKSKENPRNFSDNQLQEGKNVIG ENPRNFSDNQLQEGKNVIGLQMGTNRGASQ R N F G K N 0 0 2 1 0 2 1 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1278.584 P37802;X6RJP6 P37802 161 171 TAGLN2 Transgelin-2 yes no 2 0.00011186 140.11 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.132 0.95167 10.212 6 Median 1.1076 1.0337 18.854 2 0 Median 1.1083 0.93561 0.54183 2 0 Median 1.1394 1.0687 NaN 1 0 Median 1.1633 0.96431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159470000 71369000 88102000 74445000 32868000 41577000 42149000 19333000 22816000 37588000 16774000 20813000 5288400 2393200 2895200 0 0 0 0 0 0 25415 2269 26768 135086;135087;135088;135089;135090;135091 135829;135830;135831;135832;135833;135834;135835;135836;135837;135838;135839;135840 135830 12 NFSDNQLQEGKNVIGLQMGTNR GDPNWFPKKSKENPRNFSDNQLQEGKNVIG QEGKNVIGLQMGTNRGASQAGMTGYGMPRQ R N F N R G 0 1 4 1 0 3 1 3 0 1 2 1 1 1 0 1 1 0 0 1 0 0 22 1 2462.1972 P37802;X6RJP6 P37802 161 182 TAGLN2 Transgelin-2 yes no 3 4.1358E-26 137.73 By MS/MS By MS/MS By matching 3 1 1 1.1551 1.1564 17.519 5 Median 1.1698 1.1604 13.693 3 0 Median 0.98241 0.91855 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1551 1.0225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47527000 21531000 25996000 45488000 20638000 24850000 1734100 764980 969070 0 0 0 305480 128670 176810 0 0 0 0 0 0 25416 2269 26769 135092;135093;135094;135095;135096 135841;135842;135843 135841 3 NFSEVFQK RKYEAIQLTFKQVSKNFSEVFQKLVPGGKA TFKQVSKNFSEVFQKLVPGGKATLVMKKGD K N F Q K L 0 0 1 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 8 0 997.4869 Q9UQE7 Q9UQE7 1039 1046 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0075282 66.682 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 1.1126 1.0425 8.8505 8 Median 0.90136 0.89318 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91575 0.97709 NaN 1 0 Median 1.1557 1.015 14.555 2 0 Median 0.99719 1.0444 NaN 1 0 Median 1.2554 1.0438 5.2242 3 0 Median 44731000 22111000 22620000 2717900 1420400 1297500 0 0 0 16080000 8029500 8050100 3223200 1381600 1841600 18002000 9158300 8843400 4708900 2121400 2587500 25417 4362 26770 135097;135098;135099;135100;135101;135102;135103;135104 135844;135845;135846;135847;135848 135844 5 NFSGAELEGLVR LSADVDIKELAVETKNFSGAELEGLVRAAQ ETKNFSGAELEGLVRAAQSTAMNRHIKAST K N F V R A 1 1 1 0 0 0 2 2 0 0 2 0 0 1 0 1 0 0 0 1 0 0 12 0 1290.6568 I3L0N3;P46459 I3L0N3 430 441 NSF Vesicle-fusing ATPase yes no 2 0.00020783 85.377 By MS/MS By matching 1 1 1.2964 1.1726 24.577 2 Median 1.0419 0.98551 NaN 1 0 Median 1.6131 1.3951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23059000 10063000 12996000 17098000 7992900 9105300 5960700 2070300 3890400 0 0 0 0 0 0 0 0 0 0 0 0 25418 1272 26771 135105;135106 135849;135850 135850 2 NFSGTASTSLLGPPPGLLTPPVATELSQNAR SQFKRQRINPLPGGRNFSGTASTSLLGPPP LLTPPVATELSQNARHLQGGEKQRVFTGIV R N F A R H 3 1 2 0 0 1 1 3 0 0 5 0 0 1 5 4 4 0 0 1 0 0 31 0 3092.6142 Q8N163;E5RFJ3;E5RGU7;E5RHH8 Q8N163 17 47 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.021267 20.734 By MS/MS 1 0.40052 0.39232 NaN 1 Median 0.40052 0.39232 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2614100 2138700 475360 2614100 2138700 475360 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25419 3354 26772 135107 135851 135851 1 NFSNMDDEENYSAASK RAQKGELLERLSSARNFSNMDDEENYSAAS FSNMDDEENYSAASKAVRQVLHQLKRLGIV R N F S K A 2 0 3 2 0 0 2 0 0 0 0 1 1 1 0 3 0 0 1 0 0 0 16 0 1820.7159 O43264 O43264 609 624 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.00073164 42.976 By MS/MS 1 0.99977 0.97408 NaN 1 Median 0.99977 0.97408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2846300 1466700 1379600 2846300 1466700 1379600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25420 1562 26773 135108 135852 135852 1 NFSTVDIQK FRVTCKEEKVLRNNKNFSTVDIQKNGVKFT VLRNNKNFSTVDIQKNGVKFTNSKLTSLNE K N F Q K N 0 0 1 1 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 1050.5346 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 538 546 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0049104 65.88 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.1764 1.1107 33.166 6 Median 2.0697 2.0252 NaN 1 0 Median 1.3494 1.1641 NaN 1 0 Median 0.93478 0.98632 32.184 2 0 Median 1.1384 0.96425 13.373 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24653000 10941000 13712000 4478000 1714800 2763200 3695000 1641600 2053500 10043000 4498200 5544700 6437300 3086500 3350800 0 0 0 0 0 0 25421 2324 26774 135109;135110;135111;135112;135113;135114 135853;135854 135853 2 NFSVNLYK YGLSFFKPRPGNFERNFSVNLYKVTGQFPW RPGNFERNFSVNLYKVTGQFPWSSLRETDR R N F Y K V 0 0 2 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 8 0 983.50763 Q9Y512 Q9Y512 187 194 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.011851 56.122 By MS/MS By matching By matching 1 1 1 1.2139 1.0111 12.509 3 Median 1.0195 0.95389 NaN 1 0 Median 1.4222 1.2124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2139 1.0111 NaN 1 0 Median 13921000 6153000 7768500 7689400 3712600 3976800 3921900 1473700 2448200 0 0 0 0 0 0 0 0 0 2310200 966650 1343500 25422 4452 26775 135115;135116;135117 135855 135855 1 NFTFLSK LTNIQKKYYRAILEKNFTFLSKGGGQANVP YYRAILEKNFTFLSKGGGQANVPNLLNTMM K N F S K G 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 7 0 855.44905 Q9P2D1 Q9P2D1 1225 1231 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.071547 35.249 By MS/MS By matching 1 1 1.2627 1.2664 13.83 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2872 1.3966 NaN 1 0 Median 1.2388 1.1485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3376800 1449700 1927100 0 0 0 0 0 0 3206700 1378700 1828100 170010 71020 98986 0 0 0 0 0 0 25423 4220 26776 135118;135119 135856 135856 1 NFTMDTESSVYNFEGEDYREK EMNEKLSKMGESSLRNFTMDTESSVYNFEG ESSVYNFEGEDYREKQKIAFTEWIEPPKRE R N F E K Q 0 1 2 2 0 0 4 1 0 0 0 1 1 2 0 2 2 0 2 1 0 0 21 1 2560.07 O60264 O60264 702 722 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 3.8064E-19 109.89 By MS/MS By matching By MS/MS By matching 2 1 2 2 0.96983 1.0283 7.4134 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93817 1.0635 4.7541 2 0 Median 1.2366 1.1884 NaN 1 0 Median 0.90937 1.001 1.1264 2 0 Median 1.1463 1.0163 9.0826 2 0 Median 44001000 21632000 22370000 0 0 0 0 0 0 29357000 14063000 15294000 329750 131980 197760 13858000 7254500 6603300 456880 181950 274920 25424 1608 26777;26778 135120;135121;135122;135123;135124;135125;135126 135857;135858;135859;135860;135861;135862;135863 135861 519 7 NFTTEQVTAMLLSK TGLTGIKVTYMEEERNFTTEQVTAMLLSKL RNFTTEQVTAMLLSKLKETAESVLKKPVVD R N F S K L 1 0 1 0 0 1 1 0 0 0 2 1 1 1 0 1 3 0 0 1 0 0 14 0 1581.8072 P34932;A0A087WYC1;A0A087WTS8 P34932 111 124 HSPA4 Heat shock 70 kDa protein 4 yes no 2 5.3945E-07 132.32 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1.2731 1.2065 12.604 7 Median 1.2838 1.2713 4.9227 2 0 Median 1.1961 1.0263 2.7619 2 0 Median 1.2731 1.3925 NaN 1 0 Median 1.3091 1.123 10.147 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75407000 34262000 41145000 25324000 11491000 13834000 40378000 18418000 21959000 8851800 3989600 4862100 852870 363220 489650 0 0 0 0 0 0 25425 2230 26779 135127;135128;135129;135130;135131;135132;135133 135864;135865;135866;135867;135868;135869 135865 6 NFVDSPIIVDITK WNLALNPEGGPNWVRNFVDSPIIVDITKDT VRNFVDSPIIVDITKDTFYKQPMFYHLGHF R N F T K D 0 0 1 2 0 0 0 0 0 3 0 1 0 1 1 1 1 0 0 2 0 0 13 0 1459.7922 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 348 360 GBA Glucosylceramidase yes no 2 0.040448 25.938 By MS/MS By matching 2 2 0.98429 0.90991 23.625 4 Median 1.1298 1.1017 21.338 2 0 Median 0.91853 0.7969 13.046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8537700 4424300 4113400 3035700 1497700 1538000 5502000 2926600 2575400 0 0 0 0 0 0 0 0 0 0 0 0 25426 281 26780 135134;135135;135136;135137 135870 135870 1 NFVELISHQQLSK QYPALITGRSSILLKNFVELISHQQLSKGL LKNFVELISHQQLSKGLINRDRSQSWILSV K N F S K G 0 0 1 0 0 2 1 0 1 1 2 1 0 1 0 2 0 0 0 1 0 0 13 0 1541.8202 Q9NXF1 Q9NXF1 185 197 TEX10 Testis-expressed sequence 10 protein yes yes 2;3 0.00017899 82.171 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.2951 1.3786 8.7308 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1698 1.2753 15.058 2 0 Median 1.5703 1.3786 NaN 1 0 Median 1.2518 1.2926 NaN 1 0 Median 1.6709 1.3961 NaN 1 0 Median 32118000 14539000 17579000 0 0 0 0 0 0 26174000 11886000 14287000 395820 141190 254640 5067500 2320500 2747000 480720 190750 289970 25427 4163 26781 135138;135139;135140;135141;135142 135871;135872;135873;135874;135875 135874 5 NFVLPEEIIQEVR ALHESEILPFPNPERNFVLPEEIIQEVREG ERNFVLPEEIIQEVREGKVMIEEEMKEEMK R N F V R E 0 1 1 0 0 1 3 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 13 0 1584.8512 Q9NV56 Q9NV56 104 116 MRGBP MRG/MORF4L-binding protein yes yes 2 0.00031274 77.379 By MS/MS By matching By matching 2 1 2 1.0217 0.8776 27.225 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85544 0.82169 9.3086 2 0 Median 1.0217 0.85864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4095 1.1923 36.475 2 0 Median 6013500 3018300 2995200 0 0 0 0 0 0 3998100 2044600 1953500 372810 167840 204970 0 0 0 1642600 805850 836730 25428 4123 26782 135143;135144;135145;135146;135147 135876;135877 135877 2 NFVVVMVTK LNDDTALKEYKIDEKNFVVVMVTKPKAVST YKIDEKNFVVVMVTKPKAVSTPAPATTQQS K N F T K P 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 4 0 0 9 0 1035.5787 P54727;Q5W0S5;Q5W0S4;K7ENJ0;K7ELW1 P54727 68 76 RAD23B;RAD23A UV excision repair protein RAD23 homolog B no no 2 0.01726 41.876 By MS/MS By matching By matching 1 1 1 1.1038 0.97041 19.56 3 Median 1.1781 1.1095 NaN 1 0 Median 1.1038 0.97041 NaN 1 0 Median 0.73884 0.75475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7872500 3401300 4471200 5628800 2238700 3390100 840160 409070 431090 1403600 753540 650020 0 0 0 0 0 0 0 0 0 25429 2486 26783 135148;135149;135150 135878 135878 1 NFVVVMVTKPK LNDDTALKEYKIDEKNFVVVMVTKPKAVST IDEKNFVVVMVTKPKAVSTPAPATTQQSAP K N F P K A 0 0 1 0 0 0 0 0 0 0 0 2 1 1 1 0 1 0 0 4 0 0 11 1 1260.7264 P54727;Q5W0S5;Q5W0S4 P54727 68 78 RAD23B UV excision repair protein RAD23 homolog B yes no 2 0.00065047 85.533 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 0.97851 1.0306 33.472 6 Median 0.90432 0.8574 NaN 1 0 Median 0.85564 0.78475 44.682 2 0 Median 0.94545 0.98684 NaN 1 0 Median 1.5911 1.5904 NaN 1 1 Median 1.0127 1.08 NaN 1 0 Median NaN NaN NaN 0 0 Median 91582000 45805000 45777000 38664000 19943000 18721000 34744000 16674000 18069000 12423000 6482200 5940700 3072800 1175200 1897600 2678500 1530400 1148100 0 0 0 25430 2486 26784 135151;135152;135153;135154;135155;135156 135879;135880;135881;135882;135883 135881 5 NFWQGVK RVWNTLSIKNNYDVKNFWQGVKSKVTALCW IKNNYDVKNFWQGVKSKVTALCWHPTKEGC K N F V K S 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 7 0 877.44464 Q8TEQ6 Q8TEQ6 420 426 GEMIN5 Gem-associated protein 5 yes yes 2 0.037411 46.351 By MS/MS By matching By matching 1 1 1 1.0946 0.99989 66.071 3 Median 1.3581 1.2794 NaN 1 0 Median 1.0946 0.99989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32123 0.36746 NaN 1 0 Median NaN NaN NaN 0 0 Median 3672600 1764000 1908600 1867300 583420 1283900 298880 177350 121530 0 0 0 0 0 0 1506400 1003200 503180 0 0 0 25431 3478 26785 135157;135158;135159 135884 135884 1 NFWSHETR QGLIDENPGLQLIIRNFWSHETRLPSNTLD GLQLIIRNFWSHETRLPSNTLDRLLALNSL R N F T R L 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 8 0 1075.4835 P78527 P78527 2523 2530 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0024637 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 3 1.3897 1.1913 23.599 11 Median 1.0599 1.0473 19.415 2 0 Median 1.4415 1.1825 8.8061 2 0 Median 0.72489 0.79612 20.753 2 0 Median 1.509 1.3238 13.794 2 0 Median NaN NaN NaN 0 0 Median 1.4326 1.1913 18.76 3 0 Median 85530000 39536000 45994000 14852000 7428700 7423700 32479000 12943000 19536000 26078000 14388000 11690000 6521300 2662200 3859100 0 0 0 5599200 2114000 3485200 25432 2647 26786 135160;135161;135162;135163;135164;135165;135166;135167;135168;135169;135170;135171 135885;135886;135887;135888;135889;135890;135891;135892;135893;135894;135895 135890 11 NFWSHETRLPSNTLDR QGLIDENPGLQLIIRNFWSHETRLPSNTLD FWSHETRLPSNTLDRLLALNSLYSPKIEVH R N F D R L 0 2 2 1 0 0 1 0 1 0 2 0 0 1 1 2 2 1 0 0 0 0 16 1 1971.9551 P78527 P78527 2523 2538 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3;4 3.584E-07 80.534 By MS/MS By MS/MS 2 2 0.87335 0.94907 10.441 4 Median 0.87335 0.94907 1.7331 2 1 Median NaN NaN NaN 0 0 Median 0.83492 0.91758 17.681 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46237000 23055000 23181000 21941000 9804400 12137000 0 0 0 24296000 13251000 11045000 0 0 0 0 0 0 0 0 0 25433 2647 26787 135172;135173;135174;135175 135896;135897;135898 135898 3 NFWVSGLSSTTR KRLSKEEKGRSSCGRNFWVSGLSSTTRATD CGRNFWVSGLSSTTRATDLKNLFSKYGKVV R N F T R A 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 3 2 1 0 1 0 0 12 0 1353.6677 Q15424 Q15424 407 418 SAFB Scaffold attachment factor B1 yes yes 2 4.0931E-06 143.89 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 2 1.2033 1.105 16.626 9 Median NaN NaN NaN 0 0 Median 0.7786 0.80916 NaN 1 0 Median 1.1129 1.2233 NaN 1 0 Median 1.5669 1.3387 14.152 2 0 Median 1.1062 1.105 5.4622 3 0 Median 1.2398 1.0198 0.23662 2 0 Median 158740000 74251000 84488000 0 0 0 243140 92693 150450 23302000 11103000 12199000 4577900 1949400 2628500 124410000 58400000 66009000 6207000 2704800 3502100 25434 2951 26788 135176;135177;135178;135179;135180;135181;135182;135183;135184;135185 135899;135900;135901;135902;135903;135904;135905;135906;135907;135908;135909;135910;135911;135912 135904 14 NFYDSPEK HWEYYKHPISRWIARNFYDSPEKIYERTMA ISRWIARNFYDSPEKIYERTMAVLQIEAEK R N F E K I 0 0 1 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 0 0 0 8 0 998.43453 H0Y886;O43674;E7EWP0 H0Y886 141 148 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 2 0.011256 57.281 By matching By MS/MS By matching 1 1 1 0.95527 0.90388 15.249 3 Median 0.95527 0.90388 NaN 1 0 Median 1.3189 1.1406 NaN 1 0 Median 0.84694 0.85589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5412900 2634000 2778900 2725500 1563500 1162000 1872300 659030 1213200 815130 411440 403680 0 0 0 0 0 0 0 0 0 25435 1159 26789 135186;135187;135188 135913;135914 135913 2 NFYELSPHIFALSDEAYR LPIYSPEKVEEYRNRNFYELSPHIFALSDE ELSPHIFALSDEAYRSLRDQDKDQCILITG R N F Y R S 2 1 1 1 0 0 2 0 1 1 2 0 0 2 1 2 0 0 2 0 0 0 18 0 2171.0324 E9PDF6;O43795;C9JYW1;E7EQD9;C9JUP5 E9PDF6 76 93 MYO1B Unconventional myosin-Ib yes no 3 0.022366 25.508 By MS/MS 1 0.83562 0.91687 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83562 0.91687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2754200 1376400 1377800 0 0 0 0 0 0 2754200 1376400 1377800 0 0 0 0 0 0 0 0 0 25436 914 26790 135189 135915 135915 1 NFYNEHEEITNLTPQQLIDLR PPIDHSEIDYPPFEKNFYNEHEEITNLTPQ EEITNLTPQQLIDLRHKLNLRVSGAAPPRP K N F L R H 0 1 3 1 0 2 3 0 1 2 3 0 0 1 1 0 2 0 1 0 0 0 21 0 2586.2714 Q86XP3;A0A0A0MSJ0 Q86XP3 216 236 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 5.2476E-07 47.814 By MS/MS By MS/MS 2 1 0.71154 0.76532 4.925 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6905 0.74636 6.6569 2 0 Median NaN NaN NaN 0 0 Median 0.73932 0.76532 NaN 1 0 Median NaN NaN NaN 0 0 Median 28958000 15664000 13294000 0 0 0 0 0 0 22452000 12219000 10233000 0 0 0 6505200 3444700 3060600 0 0 0 25437 3302 26791 135190;135191;135192 135916;135917;135918;135919;135920 135917 5 NFYQEHPDLAR VKKKWNLDELPKFEKNFYQEHPDLARRTAQ KFEKNFYQEHPDLARRTAQEVETYRRSKEI K N F A R R 1 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1388.6473 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4;X6RLV5 J3KTA4 57 67 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 2.8239E-06 159.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 10 5 9 10 1.0751 0.97595 37.64 38 Median 1.4632 1.3777 25.297 2 0 Median 1.1413 0.98602 7.6553 3 0 Plateau 1.0227 1.0119 27.818 9 1 Median 1.2009 1.029 14.54 5 0 Median 0.75913 0.78909 63.007 9 0 Median 1.0793 0.89829 12.534 10 0 Median 660130000 322590000 337530000 68842000 30350000 38491000 44947000 20532000 24416000 372290000 180210000 192080000 36781000 16629000 20152000 105380000 59715000 45661000 31895000 15158000 16736000 25438 1334 26792 135193;135194;135195;135196;135197;135198;135199;135200;135201;135202;135203;135204;135205;135206;135207;135208;135209;135210;135211;135212;135213;135214;135215;135216;135217;135218;135219;135220;135221;135222;135223;135224;135225;135226;135227;135228;135229;135230;135231 135921;135922;135923;135924;135925;135926;135927;135928;135929;135930;135931;135932;135933;135934;135935;135936;135937;135938;135939;135940;135941;135942;135943;135944;135945;135946;135947;135948;135949;135950;135951;135952;135953;135954;135955;135956;135957;135958;135959;135960;135961;135962 135936 42 NFYQEHPDLARR VKKKWNLDELPKFEKNFYQEHPDLARRTAQ FEKNFYQEHPDLARRTAQEVETYRRSKEIT K N F R R T 1 2 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 12 1 1544.7484 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4;X6RLV5 J3KTA4 57 68 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.049253 26.012 By MS/MS 1 0.62521 0.66961 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62521 0.66961 NaN 1 1 Median NaN NaN NaN 0 0 Median 3061500 1891500 1169900 0 0 0 0 0 0 0 0 0 0 0 0 3061500 1891500 1169900 0 0 0 25439 1334 26793 135232 135963 135963 1 NFYVEHPEVAR RKKKWDLSELPKFEKNFYVEHPEVARLTPY KFEKNFYVEHPEVARLTPYEVDELRRKKEI K N F A R L 1 1 1 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 1 2 0 0 11 0 1359.6571 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 133 143 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 1.7293E-06 163.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 7 9 6 8 0.86829 0.82962 27.314 38 Median 1.0573 1.0138 17.196 4 0 Median 0.98111 0.84886 13.403 5 0 Median 0.77215 0.78929 4.2984 7 1 Median 1.0257 0.87418 54.357 8 2 Median 0.76219 0.76282 10.93 6 0 Median 1.0334 0.8465 13.411 8 2 Median 781700000 417070000 364640000 30096000 14807000 15289000 26044000 13049000 12995000 499420000 277910000 221510000 91746000 42001000 49745000 97945000 52171000 45774000 36449000 17126000 19323000 25440 343 26794 135233;135234;135235;135236;135237;135238;135239;135240;135241;135242;135243;135244;135245;135246;135247;135248;135249;135250;135251;135252;135253;135254;135255;135256;135257;135258;135259;135260;135261;135262;135263;135264;135265;135266;135267;135268;135269;135270;135271 135964;135965;135966;135967;135968;135969;135970;135971;135972;135973;135974;135975;135976;135977;135978;135979;135980;135981;135982;135983;135984;135985;135986;135987;135988;135989;135990;135991;135992;135993;135994;135995;135996;135997;135998;135999;136000;136001;136002;136003;136004;136005;136006;136007;136008;136009;136010;136011;136012;136013;136014;136015;136016;136017;136018;136019;136020;136021 135984 58 NFYVEVPELAK EPVDHGKIEYEPFRKNFYVEVPELAKMSQE PFRKNFYVEVPELAKMSQEEVNVFRLEMEG K N F A K M 1 0 1 0 0 0 2 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1307.6762 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 334 344 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0025641 52.79 By MS/MS By matching 1 1 0.93726 0.8959 12.163 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91338 0.97637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96177 0.82207 NaN 1 0 Median 9749800 4727800 5022000 0 0 0 0 0 0 9565300 4652100 4913300 0 0 0 0 0 0 184500 75759 108740 25441 3216 26795 135272;135273 136022;136023 136023 2 NFYYAAVPSAR RNTRRAAEVWMDEYKNFYYAAVPSARNVPY DEYKNFYYAAVPSARNVPYGNIQSRLELRK K N F A R N 3 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 11 0 1257.6142 Q10471 Q10471 394 404 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 2 0.0032316 75.378 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25442 2751 26796 135274 136024 136024 1 NGAEFTDSLISNLLR EKNTTFDTFKASLVKNGAEFTDSLISNLLR NGAEFTDSLISNLLRLIQTMRPPAKPSTSK K N G L R L 1 1 2 1 0 0 1 1 0 1 3 0 0 1 0 2 1 0 0 0 0 0 15 0 1648.842 F5H658;Q14562 F5H658 73 87 DHX8 ATP-dependent RNA helicase DHX8 yes no 2 0.00064249 47.559 By matching By matching By MS/MS 1 3 1 0.93342 0.85148 22.887 5 Median 0.95862 0.95868 NaN 1 0 Median 0.83162 0.72866 12.31 3 0 Median 1.1052 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2867500 1400700 1466700 396910 162200 234710 1472700 774360 698390 997800 464170 533630 0 0 0 0 0 0 0 0 0 25443 1040 26797 135275;135276;135277;135278;135279 136025;136026 136026 2 NGALDQQKDELDVR VKDQLTKENEELKQRNGALDQQKDELDVRI RNGALDQQKDELDVRITALKSQYEGRISRL R N G V R I 1 1 1 3 0 2 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 1 1599.7853 P12270 P12270 1585 1598 TPR Nucleoprotein TPR yes yes 2;3 2.1078E-07 110.86 By matching By matching By MS/MS By matching 2 2 3 2 0.92161 0.93326 15.843 9 Median 0.81657 0.83436 8.1348 2 0 Median 1.0909 1.0268 21.667 2 0 Median 0.78062 0.93562 11.908 3 0 Median 1.1404 1.0814 20.838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48657000 24309000 24348000 7411800 4156200 3255600 10023000 4999500 5023000 25463000 12824000 12639000 5760000 2329500 3430500 0 0 0 0 0 0 25444 1978 26798 135280;135281;135282;135283;135284;135285;135286;135287;135288 136027;136028;136029;136030 136029 4 NGALSVLQK PEPDLEIVVCSGHGKNGALSVLQKSIRPQV CSGHGKNGALSVLQKSIRPQVVTTFELPGC K N G Q K S 1 0 1 0 0 1 0 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 928.53418 Q10570 Q10570 509 517 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.01317 45.68 By MS/MS By matching 2 1 1.1576 1.0528 22.219 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1157 1.2185 29.069 2 0 Median 1.1576 1.0528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10356000 4739700 5616700 0 0 0 0 0 0 9517100 4366900 5150200 839330 372770 466560 0 0 0 0 0 0 25445 2753 26799 135289;135290;135291 136031 136031 1 NGAPIIMSFPHFYQADER GNCLGSGVLNVSICKNGAPIIMSFPHFYQA PIIMSFPHFYQADERFVSAIEGMHPNQEDH K N G E R F 2 1 1 1 0 1 1 1 1 2 0 0 1 2 2 1 0 0 1 0 0 0 18 0 2091.9836 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PRF6 A0A1W2PPU6 291 308 SCARB2 Lysosome membrane protein 2 yes no 3 1.2894E-05 49.606 By MS/MS By matching 1 1 1.0125 0.94115 27.204 2 Median 0.80317 0.77645 NaN 1 0 Median 1.2764 1.1408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4848000 2648100 2199900 3763300 2160100 1603200 1084700 487970 596690 0 0 0 0 0 0 0 0 0 0 0 0 25446 340 26800 135292;135293 136032;136033 136033 2 NGDGFVSLEEFLGDYR MTEFVIQEALEEHDKNGDGFVSLEEFLGDY GDGFVSLEEFLGDYRWDPTANEDPEWILVE K N G Y R W 0 1 1 2 0 0 2 3 0 0 2 0 0 2 0 1 0 0 1 1 0 0 16 0 1816.8268 Q14257;A8MXP8 Q14257 201 216 RCN2 Reticulocalbin-2 yes no 2 0.00013515 56.225 By MS/MS By matching 1 1 0.93925 0.87816 10.89 2 Median NaN NaN NaN 0 0 Median 1.113 0.94846 NaN 1 0 Median 0.79262 0.81308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1838500 889990 948530 0 0 0 1609600 773720 835840 228960 116270 112690 0 0 0 0 0 0 0 0 0 25447 2869 26801 135294;135295 136034 136034 1 NGDLPWPPLR LNCIVAVSQNMGIGKNGDLPWPPLRNEFRY MGIGKNGDLPWPPLRNEFRYFQRMTTTSSV K N G L R N 0 1 1 1 0 0 0 1 0 0 2 0 0 0 3 0 0 1 0 0 0 0 10 0 1163.6087 P00374;B4DM58 P00374 20 29 DHFR Dihydrofolate reductase yes no 2 0.0079929 47.082 By MS/MS 1 0.63696 0.60215 NaN 1 Median 0.63696 0.60215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6513300 4156700 2356600 6513300 4156700 2356600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25448 1815 26802 135296 136035 136035 1 NGEDLGVAFWISK FANFETEEVELSFSKNGEDLGVAFWISKDS SKNGEDLGVAFWISKDSLADRALLPHVLCK K N G S K D 1 0 1 1 0 0 1 2 0 1 1 1 0 1 0 1 0 1 0 1 0 0 13 0 1434.7143 Q1KMD3;H3BQZ7 Q1KMD3 379 391 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.00090966 62.466 By MS/MS By matching 1 1 0.8893 0.84529 9.9982 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8773 0.90721 NaN 1 0 Median 0.90146 0.78759 NaN 1 0 Median 4215300 2061100 2154200 0 0 0 0 0 0 0 0 0 0 0 0 4104600 2009200 2095300 110680 51865 58820 25449 3002 26803 135297;135298 136036;136037 136036 2 NGEFFMSPNDFVTR AELRTIFLKYASIEKNGEFFMSPNDFVTRY KNGEFFMSPNDFVTRYLNIFGESQPNPKTV K N G T R Y 0 1 2 1 0 0 1 1 0 0 0 0 1 3 1 1 1 0 0 1 0 0 14 0 1659.7351 Q9UJS0;R4GN64 Q9UJS0 30 43 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 2 0.0028879 57.836 By MS/MS 1 0.69117 0.69568 NaN 1 Median 0.69117 0.69568 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2280600 1125900 1154800 2280600 1125900 1154800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25450 4297 26804 135299 136038 136038 1 NGEILLSPALSYTTK ELQQFFIKIRDELCKNGEILLSPALSYTTK NGEILLSPALSYTTKHLHNDVEKERKEKLP K N G T K H 1 0 1 0 0 0 1 1 0 1 3 1 0 0 1 2 2 0 1 0 0 0 15 0 1605.8614 Q86U86;E7EVG2;H0Y5B5 Q86U86 882 896 PBRM1 Protein polybromo-1 yes no 2 8.8658E-10 113.65 By MS/MS By matching By matching 1 1 1 1.0623 0.92331 10.924 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75757 0.83592 NaN 1 0 Median 1.1434 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0623 0.92331 NaN 1 0 Median 13068000 7139500 5928100 0 0 0 0 0 0 12141000 6715600 5425600 821550 367820 453740 0 0 0 104860 56082 48774 25451 3273 26805 135300;135301;135302 136039;136040 136040 2 NGESSELDLQGIR DPSTHRKNYVRVVGRNGESSELDLQGIRID GRNGESSELDLQGIRIDSDISGTLKFACES R N G I R I 0 1 1 1 0 1 2 2 0 1 2 0 0 0 0 2 0 0 0 0 0 0 13 0 1416.6845 F8W031;F8VXJ7;Q9Y2B0;F8W1K5;H0YI18 F8W031 112 124 CNPY2 Protein canopy homolog 2 yes no 2 5.5795E-22 155.15 By MS/MS By MS/MS 2 2 1.1737 1.0494 7.5897 4 Median 1.0333 0.99511 3.4899 2 2 Median 1.3478 1.1182 4.9587 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43818000 20818000 23000000 36405000 17742000 18663000 7412500 3075500 4337000 0 0 0 0 0 0 0 0 0 0 0 0 25452 1078 26806 135303;135304;135305;135306 136041;136042;136043;136044 136041 4 NGETVPIDEQFDKEK RNTIQWLENELNRWRNGETVPIDEQFDKEK NGETVPIDEQFDKEKANLEAFTVDKDITLT R N G E K A 0 0 1 2 0 1 3 1 0 1 0 2 0 1 1 0 1 0 0 1 0 0 15 1 1747.8265 P33176 P33176 370 384 KIF5B Kinesin-1 heavy chain yes yes 3 0.00037294 42.314 By MS/MS By matching 1 1 0.92227 0.9119 1.2361 2 Median 0.86311 0.90397 NaN 1 0 Median 0.98549 0.91991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14577000 7926200 6650700 11540000 6082700 5457400 3036800 1843500 1193300 0 0 0 0 0 0 0 0 0 0 0 0 25453 2221 26807 135307;135308 136045;136046 136046 2 NGEVQNLAVK ERKVVKMILKLLEDKNGEVQNLAVKCLGPL LLEDKNGEVQNLAVKCLGPLVSKVKEYQVE K N G V K C 1 0 2 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1070.572 Q86VP6;F5H6I6 Q86VP6 61 70 CAND1 Cullin-associated NEDD8-dissociated protein 1 no no 2 0.011698 42.287 By matching By MS/MS By matching 1 1 1 1.821 1.5396 12.127 3 Median 1.438 1.4468 NaN 1 0 Median 1.821 1.5396 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1355 1.8285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17436000 6208400 11228000 1573200 500950 1072300 12967000 4746800 8220000 0 0 0 2895900 960640 1935300 0 0 0 0 0 0 25454 3288 26808 135309;135310;135311 136047;136048 136047 2 NGFLLDGFPR VVELIEKNLETPLCKNGFLLDGFPRTVRQA TPLCKNGFLLDGFPRTVRQAEMLDDLMEKR K N G P R T 0 1 1 1 0 0 0 2 0 0 2 0 0 2 1 0 0 0 0 0 0 0 10 0 1134.5822 F8W1A4;P54819;F8VZG5;F8VY04;G3V213 F8W1A4 94 103 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 0.00040727 76.827 By MS/MS By MS/MS By matching 1 1 1 0.96743 0.92077 23.34 3 Median 0.94418 0.89667 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96743 0.92077 NaN 1 0 Median 1.6576 1.3604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22220000 11184000 11037000 18569000 9461500 9107600 0 0 0 3246500 1583600 1663000 404820 138490 266330 0 0 0 0 0 0 25455 1081 26809 135312;135313;135314 136049;136050;136051;136052;136053;136054;136055;136056 136050 8 NGGHFVISIK DQTRIVALNAHTFLRNGGHFVISIKANCID HTFLRNGGHFVISIKANCIDSTASAEAVFA R N G I K A 0 0 1 0 0 0 0 2 1 2 0 1 0 1 0 1 0 0 0 1 0 0 10 0 1070.5873 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4 P22087 256 265 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.00029687 126.07 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 1.2615 1.0665 28.715 7 Median 0.68261 0.66765 NaN 1 0 Median 1.7951 1.5174 12.89 2 0 Median 1.1075 1.0665 NaN 1 0 Median 1.4804 1.2554 NaN 1 0 Median 1.055 1.06 NaN 1 0 Median 1.2615 1.0264 NaN 1 0 Median 98384000 47310000 51074000 2722800 1486600 1236200 7447500 2632100 4815400 16522000 7583200 8939000 4135600 1780300 2355300 61946000 31305000 30641000 5609600 2522400 3087100 25456 2097 26810 135315;135316;135317;135318;135319;135320;135321 136057;136058;136059;136060;136061;136062 136058 6 NGGLGHMNIALLSDLTK DSHFSHLAWINTPRKNGGLGHMNIALLSDL GLGHMNIALLSDLTKQISRDYGVLLEGSGL K N G T K Q 1 0 2 1 0 0 0 3 1 1 4 1 1 0 0 1 1 0 0 0 0 0 17 0 1752.9193 P30048 P30048 150 166 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2;3 1.495E-18 175.74 By MS/MS By MS/MS 2 3 1.3909 1.1701 9.8292 5 Median 1.0822 1.0057 4.4565 2 0 Median 1.4149 1.1834 2.5836 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56061000 25733000 30328000 37547000 17845000 19703000 18514000 7888600 10625000 0 0 0 0 0 0 0 0 0 0 0 0 25457 2183 26811 135322;135323;135324;135325;135326 136063;136064;136065;136066;136067;136068;136069 136069 7 NGGQILIADLR ATCSSDRSVKIFDVRNGGQILIADLRGHEG FDVRNGGQILIADLRGHEGPVWQVAWAHPM R N G L R G 1 1 1 1 0 1 0 2 0 2 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1168.6564 P55735;A8MXL6;E7ERC8 P55735 44 54 SEC13 Protein SEC13 homolog yes no 2 0.00017784 93.111 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1.1208 1.0267 8.5072 7 Median 0.98821 0.92235 NaN 1 1 Median 1.1208 0.9363 NaN 1 0 Median 1.0897 1.0599 NaN 1 0 Median 1.2553 1.0822 7.4485 2 0 Median 0.90818 0.97009 NaN 1 0 Median 1.311 1.1242 NaN 1 0 Median 37117000 17832000 19285000 7463700 3680200 3783500 3702600 1786600 1916000 19217000 9271100 9946400 2590200 1170800 1419500 3170100 1563900 1606200 972470 359110 613360 25458 2500 26812 135327;135328;135329;135330;135331;135332;135333 136070;136071;136072;136073;136074 136072 5 NGHVGISFVPK PPSGREEPCLLKRLRNGHVGISFVPKETGE KRLRNGHVGISFVPKETGEHLVHVKKNGQH R N G P K E 0 0 1 0 0 0 0 2 1 1 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1153.6244 P21333;Q60FE5 P21333 2004 2014 FLNA Filamin-A no no 2 0.00011337 127.42 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 0.80991 0.77934 21.358 7 Median 0.9263 0.91141 3.0709 2 0 Median 0.82615 0.742 27.441 3 0 Plateau 0.69757 0.77753 NaN 1 0 Median 0.80991 0.77934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153510000 81711000 71798000 32666000 16623000 16043000 115890000 62039000 53851000 2845900 1669500 1176400 2107800 1379800 727920 0 0 0 0 0 0 25459 2088;3120 26813 135334;135335;135336;135337;135338;135339;135340 136075;136076;136077;136078 136076 4 NGIDILVGTPGR FYGGTPYGGQFERMRNGIDILVGTPGRIKD RMRNGIDILVGTPGRIKDHIQNGKLDLTKL R N G G R I 0 1 1 1 0 0 0 3 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 0 1210.667 Q9NR30;Q9BQ39;A0A087WVC1 Q9NR30 307 318 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 3.1447E-06 147.75 By matching By MS/MS By matching By MS/MS 2 2 1 2 0.92324 0.82806 172.6 7 Median NaN NaN NaN 0 0 Median 0.10162 0.091128 295.13 2 0 Median 1.1953 1.2903 34.383 2 0 Median 0.96091 0.82806 NaN 1 0 Median 0.38937 0.40311 118.27 2 0 Median NaN NaN NaN 0 0 Median 73900000 48541000 25359000 0 0 0 22741000 22206000 534980 22516000 11112000 11404000 3202200 1600100 1602200 25441000 13624000 11817000 0 0 0 25460 4076;3781 26814 135341;135342;135343;135344;135345;135346;135347 136079;136080;136081;136082 136082 4 NGIHDLDNISFPK FILNLPTFSVRIIDKNGIHDLDNISFPKQG DKNGIHDLDNISFPKQGS____________ K N G P K Q 0 0 2 2 0 0 0 1 1 2 1 1 0 1 1 1 0 0 0 0 0 0 13 0 1468.731 P49721;A0A087WVV1 P49721 186 198 PSMB2 Proteasome subunit beta type-2 yes no 3 0.058252 12.627 By MS/MS By matching 1 1 1.0372 0.92877 20.288 2 Median 0.86566 0.80464 NaN 1 0 Median 1.2427 1.072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5211600 2533400 2678200 4968800 2443100 2525700 242760 90270 152490 0 0 0 0 0 0 0 0 0 0 0 0 25461 2392 26815 135348;135349 136083 136083 1 NGLDVLFK RIQNMRMIDGKPEYKNGLDVLFKVVRYEGF DGKPEYKNGLDVLFKVVRYEGFFSLWKGFT K N G F K V 0 0 1 1 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 904.50182 I3L1P8;Q02978 I3L1P8 250 257 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.071363 30.185 By MS/MS By matching By matching 1 1 1 1.1389 1.0524 9.2951 3 Median 1.0526 0.98473 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1392 1.0524 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1389 1.1832 NaN 1 0 Median NaN NaN NaN 0 0 Median 8465400 3988000 4477400 7535200 3595600 3939600 0 0 0 490890 208640 282250 0 0 0 439280 183780 255500 0 0 0 25462 1277 26816 135350;135351;135352 136084 136084 1 NGLITMQSHVIR VDAGKLHYHRKILNKNGLITMQSHVIRLPT LNKNGLITMQSHVIRLPTGAQQHSILLLLN K N G I R L 0 1 1 0 0 1 0 1 1 2 1 0 1 0 0 1 1 0 0 1 0 0 12 0 1367.7344 Q12789 Q12789 219 230 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2;3 0.00015736 98.249 By MS/MS 2 0.8511 0.9338 6.601 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8511 0.9338 6.601 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14590000 7289700 7300100 0 0 0 0 0 0 14590000 7289700 7300100 0 0 0 0 0 0 0 0 0 25463 2758 26817 135353;135354 136085;136086 136085 2 NGLMFVK FLVSEYLKDASKKMKNGLMFVKLVNPCSGE KDASKKMKNGLMFVKLVNPCSGEGAIYLFN K N G V K L 0 0 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 7 0 807.4313 Q5TBB1;A0A2R8YGP2;A0A2R8Y6Q6;A0A087WXR7;A0A2R8YCX2;A0A2R8Y6M7;A0A2R8Y7R8;A0A2R8YEH2;A0A2R8Y6Y1;A0A2R8YCJ4;A0A2R8Y761;A0A087WZJ6;A0A2R8Y7Q3;A0A2R8Y883;A0A2R8YCP1;A0A2R8YE60;A0A2R8YEC1;A0A2R8Y7A3;A0A1B0GUE7;A0A2R8YEK5;A0A2R8YEQ4;A0A1B0GTJ2 Q5TBB1 33 39 RNASEH2B Ribonuclease H2 subunit B yes no 2 0.019054 61.997 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.3895 1.1285 21.61 5 Median NaN NaN NaN 0 0 Median 1.3895 1.1396 NaN 1 0 Median 1.1004 1.1184 NaN 1 0 Median 1.5115 1.1285 NaN 1 0 Median 1.585 1.6752 NaN 1 0 Median 1.1387 0.92742 NaN 1 0 Median 11018000 5143500 5874800 0 0 0 6005600 2662000 3343600 1452300 782830 669460 1385000 695180 689850 184250 95327 88927 1991100 908120 1083000 25464 69 26818 135355;135356;135357;135358;135359 136087 136087 1 NGMLNVSPIGR KIKLPKKRGTFIEFRNGMLNVSPIGRSCSQ IEFRNGMLNVSPIGRSCSQEERIEFYELDK R N G G R S 0 1 2 0 0 0 0 2 0 1 1 0 1 0 1 1 0 0 0 1 0 0 11 0 1156.6023 H3BV55;O15305;H3BPH4 H3BV55 97 107 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 2 0.00018909 108.98 By MS/MS By matching 1 1 0.68166 0.73328 49.147 2 Median 1.0942 1.038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42466 0.51802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20133000 11919000 8214000 12938000 6728200 6209800 0 0 0 7194800 5190600 2004200 0 0 0 0 0 0 0 0 0 25465 1240 26819 135360;135361 136088 136088 1 NGMVLKPHFHK ______________________________ APSRNGMVLKPHFHKDWQRRVATWFNQPAR R N G H K D 0 0 1 0 0 0 0 1 2 0 1 2 1 1 1 0 0 0 0 1 0 0 11 1 1306.6968 P26373;J3QSB4;H3BTH3 P26373 6 16 RPL13 60S ribosomal protein L13 yes no 3 0.00020569 65.5 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.008 0.9838 13.395 6 Median 0.89098 0.88522 3.2666 2 1 Median 1.0848 0.9838 8.63 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0018 1.0717 NaN 1 0 Median 1.4284 1.2397 NaN 1 0 Median 61692000 36859000 24833000 36870000 24819000 12051000 12885000 6375700 6509600 0 0 0 0 0 0 10483000 5042400 5440500 1453700 621840 831870 25466 2144 26820 135362;135363;135364;135365;135366;135367 136089;136090;136091;136092;136093;136094 136093 6 NGNLPEFGDAISTASK KVLGEAMTGISQNAKNGNLPEFGDAISTAS GNLPEFGDAISTASKALCGFTEAAAQAAYL K N G S K A 2 0 2 1 0 0 1 2 0 1 1 1 0 1 1 2 1 0 0 0 0 0 16 0 1619.7791 Q9Y490 Q9Y490 1416 1431 TLN1 Talin-1 yes yes 2 0.00011578 67.997 By MS/MS By MS/MS By matching 1 1 1 0.96458 1.0751 21.847 3 Median 0.80877 0.78092 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96458 1.0751 NaN 1 0 Median 1.3201 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17599000 9361700 8237700 13786000 7482600 6303500 0 0 0 3525100 1722200 1802900 288220 156960 131260 0 0 0 0 0 0 25467 4441 26821 135368;135369;135370 136095;136096;136097 136096 3 NGPALQEAYVR ______________________________ NLSRNGPALQEAYVRVVTEKSPTDWALFTY R N G V R V 2 1 1 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 1 1 0 0 11 0 1216.62 Q9UJU6;B4DDD6;F8WBG8;F8WC20;F8WBB2;F8WFE1;F2Z2V3;F8WB73;F8WCK3;F2Z3E3 Q9UJU6 8 18 DBNL Drebrin-like protein yes no 2 0.00022926 113.62 By MS/MS By MS/MS 3 1 0.64656 0.58876 57.177 4 Median 0.64929 0.63342 69.522 3 2 Median 0.64383 0.54724 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39233000 21289000 17943000 29098000 15729000 13368000 10135000 5560100 4575000 0 0 0 0 0 0 0 0 0 0 0 0 25468 4298 26822 135371;135372;135373;135374 136098;136099;136100;136101;136102 136098 5 NGPEFEAR EVRNIVDKTASFVARNGPEFEARIRQNEIN TASFVARNGPEFEARIRQNEINNPKFNFLN R N G A R I 1 1 1 0 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 8 0 918.41954 Q15459 Q15459 63 70 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.015598 60.436 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.69016 0.68943 16.698 5 Median NaN NaN NaN 0 0 Median 0.96162 0.81179 NaN 1 1 Median 0.6414 0.6879 NaN 1 0 Median 1.0223 0.87103 NaN 1 0 Median 0.64945 0.68943 NaN 1 0 Median 0.69016 0.56713 NaN 1 0 Median 10971000 5816600 5154000 0 0 0 4986400 2387300 2599100 1528600 837090 691510 1498800 747830 751000 2278500 1446400 832080 678270 397940 280320 25469 2954 26823 135375;135376;135377;135378;135379 136103;136104;136105;136106;136107;136108;136109 136104 7 NGPGFHNDIDSNSTIQEILIPASK EQAKRLLGQIVDRCRNGPGFHNDIDSNSTI DSNSTIQEILIPASKVGLVIGRGGETIKQL R N G S K V 1 0 3 2 0 1 1 2 1 4 1 1 0 1 2 3 1 0 0 0 0 0 24 0 2566.2663 Q96I24 Q96I24 150 173 FUBP3 Far upstream element-binding protein 3 yes yes 3 8.0818E-20 87.319 By MS/MS By matching By MS/MS By matching 3 2 1 1 0.72366 0.70061 12.989 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71938 0.69623 1.3796 3 2 Median 0.95477 0.81766 7.0868 2 0 Median 0.7716 0.73571 NaN 1 0 Median 0.66183 0.56404 NaN 1 0 Median 70764000 40731000 30032000 0 0 0 0 0 0 58043000 33580000 24463000 4152000 2079200 2072800 8160600 4838600 3322000 407790 233230 174550 25470 3673 26824 135380;135381;135382;135383;135384;135385;135386 136110;136111;136112;136113;136114;136115;136116 136114 7 NGPLEVAGAAVSAGHGLPAK GGKEFVEAVLELRKKNGPLEVAGAAVSAGH VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K N G A K F 5 0 1 0 0 0 1 4 1 0 2 1 0 0 2 1 0 0 0 2 0 0 20 0 1814.9639 O75367;B4DJC3 O75367 252 271 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2;3 1.0636E-21 167.03 By MS/MS By MS/MS 11 4 0.72688 0.72643 13.582 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71339 0.71541 9.5952 11 0 Median 0.98481 0.79866 20.421 4 0 Median 431200000 243630000 187570000 0 0 0 0 0 0 0 0 0 0 0 0 408670000 232790000 175880000 22536000 10844000 11693000 25471 1662 26825 135387;135388;135389;135390;135391;135392;135393;135394;135395;135396;135397;135398;135399;135400;135401 136117;136118;136119;136120;136121;136122;136123;136124;136125;136126;136127;136128;136129;136130;136131;136132;136133;136134;136135;136136;136137;136138;136139;136140;136141;136142;136143;136144;136145 136139 29 NGPLPIPSEGSGFTK LLAIAACTALGEIGRNGPLPIPSEGSGFTK NGPLPIPSEGSGFTKLHLVESLLSRIPSSK R N G T K L 0 0 1 0 0 0 1 3 0 1 1 1 0 1 3 2 1 0 0 0 0 0 15 0 1499.762 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 823 837 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 1.5611E-07 96.334 By MS/MS By MS/MS By matching 1 1 1 0.77074 0.74261 34.038 3 Median 0.77074 0.74261 NaN 1 1 Median 0.64938 0.57661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.308 1.1312 NaN 1 0 Median 21625000 12518000 9106400 17908000 10441000 7467000 3447300 1937300 1510100 0 0 0 0 0 0 0 0 0 269690 140350 129340 25472 3116 26826 135402;135403;135404 136146;136147 136146 2 NGQDLGVAFK FANFESDEVELSYAKNGQDLGVAFKISKEV LSYAKNGQDLGVAFKISKEVLAGRPLFPHV K N G F K I 1 0 1 1 0 1 0 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1047.5349 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 424 433 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.00038663 95.502 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 5 3 1.1935 1.1561 40.8 14 Median 0.97954 0.94597 NaN 1 0 Median 1.4278 1.2038 6.8016 3 0 Median 1.1159 1.1986 NaN 1 0 Median 1.3864 1.2125 6.5286 2 0 Median 1.0252 1.0078 65.02 5 0 Median 1.2824 1.0741 14.126 2 1 Median 270800000 118850000 151950000 15551000 7018900 8532200 40571000 15460000 25111000 46010000 20655000 25355000 19950000 7403300 12547000 135380000 62921000 72460000 13341000 5395300 7946000 25473 2680 26827 135405;135406;135407;135408;135409;135410;135411;135412;135413;135414;135415;135416;135417;135418;135419 136148;136149;136150;136151;136152;136153;136154;136155;136156;136157;136158;136159;136160;136161;136162;136163;136164;136165;136166 136156 19 NGQHVASSPIPVVISQSEIGDASR FVPKETGEHLVHVKKNGQHVASSPIPVVIS IPVVISQSEIGDASRVRVSGQGLHEGHTFE K N G S R V 2 1 1 1 0 2 1 2 1 3 0 0 0 0 2 5 0 0 0 3 0 0 24 0 2447.2405 P21333;H0Y5C6;Q60FE5 P21333 2026 2049 FLNA Filamin-A no no 3 6.5206E-44 158.91 By MS/MS By MS/MS By MS/MS By matching 4 1 2 1 0.73836 0.69297 21.353 7 Median 0.82405 0.77004 18.054 3 0 Plateau 0.68976 0.55715 NaN 1 0 Median 0.81186 0.89982 17.35 2 0 Median 0.7421 0.6444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59601000 34920000 24681000 39405000 22921000 16484000 12440000 7566500 4873900 7293300 4176200 3117200 461650 256110 205540 0 0 0 0 0 0 25474 2088;3120 26828 135420;135421;135422;135423;135424;135425;135426;135427 136167;136168;136169;136170;136171;136172;136173;136174 136168 8 NGQIQYSIGGPNPGR VIADTGHHRILVVWKNGQIQYSIGGPNPGR NGQIQYSIGGPNPGRKDGIFSESTFNSPQG K N G G R K 0 1 2 0 0 2 0 4 0 2 0 0 0 0 2 1 0 0 1 0 0 0 15 0 1556.7696 Q8NBF2 Q8NBF2 254 268 NHLRC2 NHL repeat-containing protein 2 yes yes 2 1.1146E-09 106.29 By MS/MS 1 0.66407 0.65093 NaN 1 Median 0.66407 0.65093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603000 1564000 1038900 2603000 1564000 1038900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25475 3402 26829 135428 136175 136175 1 NGQVIGIGAGQQSR IAVKYTQSNSVCYAKNGQVIGIGAGQQSRI KNGQVIGIGAGQQSRIHCTRLAGDKANYWW K N G S R I 1 1 1 0 0 3 0 4 0 2 0 0 0 0 0 1 0 0 0 1 0 0 14 0 1383.7219 P31939;H7C1S2 P31939 438 451 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 1.2687E-07 160.36 By MS/MS By MS/MS 1 1 1.1326 1.0254 5.6203 2 Median 1.1256 1.067 NaN 1 0 Median 1.1396 0.98547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28023000 13400000 14623000 13922000 6526000 7395600 14101000 6874200 7227100 0 0 0 0 0 0 0 0 0 0 0 0 25476 2207 26830 135429;135430 136176;136177;136178;136179 136176 4 NGQYAEASALYGR DSVEELRAAGNESFRNGQYAEASALYGRAL FRNGQYAEASALYGRALRVLQAQGSSDPEE R N G G R A 3 1 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 2 0 0 0 13 0 1398.6528 Q15785 Q15785 22 34 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.00019733 93.058 By MS/MS By MS/MS By MS/MS 1 1 1 1.1632 1.0887 17.829 3 Plateau 1.1632 1.0887 NaN 1 1 Median 0.93963 0.78362 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2479 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21675000 9623000 12052000 12109000 5217200 6891600 4688200 2400200 2288000 0 0 0 4878200 2005600 2872600 0 0 0 0 0 0 25477 2971 26831 135431;135432;135433 136180;136181;136182;136183;136184 136180 5 NGRVEIIANDQGNR GIDLGTTYSCVGVFKNGRVEIIANDQGNRI KNGRVEIIANDQGNRITPSYVAFTPEGERL K N G N R I 1 2 3 1 0 1 1 2 0 2 0 0 0 0 0 0 0 0 0 1 0 0 14 1 1554.7863 P11021 P11021 47 60 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.00032876 71.555 By MS/MS By matching By matching 3 1 1 1.2063 1.2369 15.242 5 Median 1.2063 1.2369 10.306 3 0 Plateau 1.516 1.3769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6863 1.5244 NaN 1 0 Median 23264000 10651000 12613000 20767000 9613700 11153000 1775900 725940 1050000 0 0 0 0 0 0 0 0 0 721200 311030 410180 25478 1948 26832 135434;135435;135436;135437;135438 136185;136186;136187;136188;136189 136189 5 NGSEADIDEGLYSR VLSEVPSVPTNGMAKNGSEADIDEGLYSRQ KNGSEADIDEGLYSRQLYVLGHEAMKRLQT K N G S R Q 1 1 1 2 0 0 2 2 0 1 1 0 0 0 0 2 0 0 1 0 0 0 14 0 1524.6692 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 44 57 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 1.9656E-23 197.07 By MS/MS By MS/MS By matching 1 1 1 1.3018 1.0929 18.567 3 Median 1.1064 1.0626 NaN 1 0 Median 1.3018 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7392 1.485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70687000 33358000 37329000 62605000 29852000 32753000 7177900 3183400 3994500 0 0 0 904820 322700 582120 0 0 0 0 0 0 25479 2100 26833 135439;135440;135441 136190;136191;136192;136193 136191 4 NGSFANLR HTWQDHGYLATYTNKNGSFANLRIYPHGLV LATYTNKNGSFANLRIYPHGLVLLDLQSYD K N G L R I 1 1 2 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 877.44061 P52788;H7C2R7 P52788 55 62 SMS Spermine synthase yes no 2 0.0030267 102.3 By MS/MS By MS/MS 1 1 1.1786 1.0985 14.626 2 Median 1.224 1.2181 NaN 1 0 Median 1.1348 0.99053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11166000 5253900 5912300 3729700 1743300 1986400 7436500 3510600 3925900 0 0 0 0 0 0 0 0 0 0 0 0 25480 2459 26834 135442;135443 136194;136195;136196;136197 136196 4 NGSFGVLVATNVAAR DIPQKQREITLKGFRNGSFGVLVATNVAAR NGSFGVLVATNVAARGLDIPEVDLVIQSSP R N G A R G 3 1 2 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 3 0 0 15 0 1474.7892 Q9NR30 Q9NR30 485 499 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00016426 76.655 By matching By MS/MS 1 1 1.2979 1.2447 8.2432 2 Median NaN NaN NaN 0 0 Median 1.355 1.1742 NaN 1 0 Median 1.2431 1.3194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14709000 6043700 8665400 0 0 0 2894600 1146300 1748300 11815000 4897500 6917100 0 0 0 0 0 0 0 0 0 25481 4076 26835 135444;135445 136198;136199 136198 2 NGTLPWLRPDSK VLAHKLNAKLAELRRNGTLPWLRPDSKTQV LRRNGTLPWLRPDSKTQVTVQYMQDRGAVL R N G S K T 0 1 1 1 0 0 0 1 0 0 2 1 0 0 2 1 1 1 0 0 0 0 12 1 1382.7306 P31153 P31153 170 181 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 0.029009 58.37 By MS/MS 1 0.57355 0.61452 NaN 1 Median 0.57355 0.61452 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8202700 5951500 2251200 8202700 5951500 2251200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25482 2202 26836 135446 136200 136200 1 NGTQVHGTITGVDVSMNTHLK FLMKLSHETVTIELKNGTQVHGTITGVDVS GTITGVDVSMNTHLKAVKMTLKNREPVQLE K N G L K A 0 0 2 1 0 1 0 3 2 1 1 1 1 0 0 1 4 0 0 3 0 0 21 0 2208.0957 P62314 P62314 21 41 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2;3;4 6.466E-47 178.03 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 5 1 1 1 1.0325 0.97033 8.8576 12 Median 1.1725 1.1084 NaN 1 0 Median 1.3201 1.0851 1.6969 3 2 Median 1.0271 0.96253 2.9547 5 3 Median 1.0139 0.84025 NaN 1 0 Median 0.85358 0.92361 NaN 1 0 Median 1.3273 1.0525 NaN 1 0 Median 637100000 309690000 327410000 4965300 2136600 2828700 79166000 32725000 46440000 533150000 265270000 267880000 4464300 2242300 2222000 14394000 6960800 7432900 957880 351320 606560 25483 2585 26837;26838 135447;135448;135449;135450;135451;135452;135453;135454;135455;135456;135457;135458 136201;136202;136203;136204;136205;136206;136207;136208;136209;136210;136211;136212 136210 1252 12 NGVDLLMK FKANDIEKAVQSLDKNGVDLLMKYIYKGFE AVQSLDKNGVDLLMKYIYKGFESPSDNSSA K N G M K Y 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 8 0 888.47389 O15511;B1ALC0;Q9BPX5 O15511 101 108 ARPC5;ARPC5L Actin-related protein 2/3 complex subunit 5;Actin-related protein 2/3 complex subunit 5-like protein no no 2 0.031031 38.792 By MS/MS By MS/MS 1 1 0.96526 0.88897 39.117 2 Median NaN NaN NaN 0 0 Median 1.3653 1.1722 NaN 1 0 Median 0.68244 0.67416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6843800 2957100 3886700 0 0 0 4332700 1607800 2724900 2511100 1349300 1161700 0 0 0 0 0 0 0 0 0 25484 1551;3779 26839 135459;135460 136213;136214;136215 136215 3 NGVFVDGAFQR LSFQEPHFYLRCLGKNGVFVDGAFQRRGAP CLGKNGVFVDGAFQRRGAPALQLPKQCTFR K N G Q R R 1 1 1 1 0 1 0 2 0 0 0 0 0 2 0 0 0 0 0 2 0 0 11 0 1208.5938 P85037 P85037 166 176 FOXK1 Forkhead box protein K1 yes yes 2 0.0049918 67.897 By MS/MS 2 0.89448 0.95348 8.1759 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89448 0.95348 8.1759 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11853000 6684100 5168700 0 0 0 0 0 0 11853000 6684100 5168700 0 0 0 0 0 0 0 0 0 25485 2669 26840 135461;135462 136216;136217 136217 2 NGVMPSHFSR AGVGSMTKIYGGRQRNGVMPSHFSRGSKSV GGRQRNGVMPSHFSRGSKSVARRVLQALEG R N G S R G 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 2 0 0 0 1 0 0 10 0 1130.5291 P39019;A0A075B6E2 P39019 85 94 RPS19 40S ribosomal protein S19 yes no 2 0.00039409 93.649 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0367 0.93685 12.105 4 Median 0.98015 0.9468 NaN 1 0 Median 0.98916 0.82058 NaN 1 0 Median 1.0865 1.1021 NaN 1 0 Median 1.1699 0.92701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24627000 12360000 12266000 15206000 7888600 7317100 4110500 2068100 2042400 4753300 2152500 2600800 557100 251030 306080 0 0 0 0 0 0 25486 2280 26841 135463;135464;135465;135466 136218;136219;136220;136221;136222;136223;136224 136218 7 NGVQAMVEFDSVQSAQR CNPCGPVQRIVIFRKNGVQAMVEFDSVQSA VQAMVEFDSVQSAQRAKASLNGADIYSGCC K N G Q R A 2 1 1 1 0 3 1 1 0 0 0 0 1 1 0 2 0 0 0 3 0 0 17 0 1864.8738 A0A3B3ITJ4;M0QXS5;M0R1W6;B4DVF8;M0QYL7;P14866 P14866 230 246 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2;3 3.4392E-52 227.31 By matching By MS/MS By MS/MS By MS/MS 1 4 1 8 0.9736 0.98064 23.781 14 Median NaN NaN NaN 0 0 Median 1.8651 1.6337 NaN 1 0 Median 1.0011 1.0003 8.0258 4 0 Median 1.2345 1.0315 NaN 1 1 Median 0.96704 0.9605 23.727 8 1 Median NaN NaN NaN 0 0 Median 132500000 65433000 67069000 0 0 0 714270 356940 357320 72524000 34846000 37679000 2327900 968310 1359600 56935000 29262000 27673000 0 0 0 25487 2011;436 26842;26843 135467;135468;135469;135470;135471;135472;135473;135474;135475;135476;135477;135478;135479;135480 136225;136226;136227;136228;136229;136230;136231;136232;136233;136234;136235;136236;136237;136238;136239;136240;136241;136242;136243;136244;136245;136246 136228 191 22 NGWSYDIEER LTFSTKEDAVSFAEKNGWSYDIEERKVPKP SFAEKNGWSYDIEERKVPKPKSKSYGANFS K N G E R K 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 1 1 0 0 0 10 0 1267.5469 O43181 O43181 141 150 NDUFS4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial yes yes 2 0.013348 56.563 By MS/MS 2 0.78442 0.78337 1.8927 2 Median 0.78442 0.78337 1.8927 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6934800 3912000 3022800 6934800 3912000 3022800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25488 1558 26844 135481;135482 136247;136248 136248 2 NGYELSPTAAANFTR FAEYIQKNVQLYKMRNGYELSPTAAANFTR NGYELSPTAAANFTRRNLADCLRSRTPYHV R N G T R R 3 1 2 0 0 0 1 1 0 0 1 0 0 1 1 1 2 0 1 0 0 0 15 0 1610.7689 P49721 P49721 71 85 PSMB2 Proteasome subunit beta type-2 yes yes 2 8.7435E-10 157.68 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 0.99264 0.92205 7.1967 6 Median 0.95534 0.90907 NaN 1 0 Median 1.0124 0.85711 NaN 1 0 Median 0.97324 0.93522 NaN 1 0 Median 1.0257 0.84545 NaN 1 0 Median 0.95903 1.0143 NaN 1 0 Median 1.2435 0.9787 NaN 1 0 Median 82249000 39605000 42645000 68894000 33335000 35559000 3199000 1593900 1605200 7797500 3615900 4181600 683850 311510 372340 1428300 637300 790960 246690 110750 135950 25489 2392 26845 135483;135484;135485;135486;135487;135488 136249;136250;136251;136252;136253;136254;136255;136256 136251 8 NGYGFINR IATKVLGTVKWFNVRNGYGFINRNDTKEDV VKWFNVRNGYGFINRNDTKEDVFVHQTAIK R N G N R N 0 1 2 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 8 0 939.45626 P16989;Q9Y2T7;P67809;C9J5V9 P67809 70 77 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2 0.002615 125.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 1 1.1495 1.0536 20.651 7 Median 1.1495 1.0951 NaN 1 0 Median 1.2963 1.1025 20.132 2 0 Median NaN NaN NaN 0 0 Median 1.0504 0.8939 23.242 2 0 Median 1.3918 1.3978 NaN 1 0 Median 1.0566 0.90713 NaN 1 0 Median 56234000 25405000 30829000 13181000 5987300 7193500 9358800 4253100 5105700 0 0 0 17977000 8092500 9884300 5789400 2315600 3473700 9928400 4756400 5172000 25490 2627;2033 26846 135489;135490;135491;135492;135493;135494;135495;135496 136257;136258;136259;136260;136261;136262 136262 6 NGYGFVEFEDSR RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD DLKNGYGFVEFEDSRDADDAVYELNGKELC K N G S R D 0 1 1 1 0 0 2 2 0 0 0 0 0 2 0 1 0 0 1 1 0 0 12 0 1418.6103 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 35 46 SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.057202 55.314 By matching By MS/MS By matching By matching 2 1 2 1 0.9954 0.8816 23.381 6 Median NaN NaN NaN 0 0 Median 1.1426 1.0137 22.733 2 0 Median 0.82639 0.82774 NaN 1 0 Median 1.1856 1.0419 20.635 2 0 Median 0.64823 0.65239 NaN 1 0 Median NaN NaN NaN 0 0 Median 7856700 4100700 3756100 0 0 0 751010 327730 423270 5726900 3046100 2680700 520110 218430 301680 858760 508370 350390 0 0 0 25491 485 26847 135497;135498;135499;135500;135501;135502 136263 136263 0 NGYHGDLNETFFVGEVDDGAR LQEGDIVNVDITLYRNGYHGDLNETFFVGE LNETFFVGEVDDGARKLVQTTYECLMQAID R N G A R K 1 1 2 3 0 0 2 4 1 0 1 0 0 2 0 0 1 0 1 2 0 0 21 0 2311.0142 P53582;H0Y903 P53582 226 246 METAP1 Methionine aminopeptidase 1 yes no 3 2.6881E-33 124.35 By MS/MS 1 1.7439 1.9022 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7439 1.9022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12471000 4494900 7976200 0 0 0 0 0 0 12471000 4494900 7976200 0 0 0 0 0 0 0 0 0 25492 2468 26848 135503 136264 136264 1 NHAAPFSK SPAEEGSSDCEVFSKNHAAPFSKVLTFYRK DCEVFSKNHAAPFSKVLTFYRKEPFTLEAY K N H S K V 2 0 1 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 8 0 870.4348 P34932;A0A087WYC1;A0A087WTS8;Q92598;A0A0A0MSM0 P34932 423 430 HSPA4;HSPH1 Heat shock 70 kDa protein 4;Heat shock protein 105 kDa no no 2 0.031746 58.917 By MS/MS 1 0.53691 0.45981 NaN 1 Median NaN NaN NaN 0 0 Median 0.53691 0.45981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1050200 656740 393450 0 0 0 1050200 656740 393450 0 0 0 0 0 0 0 0 0 0 0 0 25493 2230;3541 26849 135504 136265 136265 1 NHDHQEIAVPVANLK EGAKDECNVVEVVARNHDHQEIAVPVANLK NHDHQEIAVPVANLKLSCQPMLSLDDFQLQ R N H L K L 2 0 2 1 0 1 1 0 2 1 1 1 0 0 1 0 0 0 0 2 0 0 15 0 1683.8693 O75607 O75607 88 102 NPM3 Nucleoplasmin-3 yes yes 2;3 5.699E-07 93.228 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 0.98814 0.88938 10.566 6 Median 0.93682 0.8726 NaN 1 0 Median 1.2345 1.0609 NaN 1 0 Median 0.94696 0.88791 11.634 3 1 Median 1.0728 0.89086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75626000 37041000 38585000 8152900 3556700 4596200 3322000 1559900 1762100 42508000 22026000 20481000 21643000 9898300 11745000 0 0 0 0 0 0 25494 1686 26850 135505;135506;135507;135508;135509;135510 136266;136267;136268;136269;136270;136271;136272;136273;136274 136267 9 NHEAQIQDMR QEVAELKKALEEETKNHEAQIQDMRQRHAT EEETKNHEAQIQDMRQRHATALEELSEQLE K N H M R Q 1 1 1 1 0 2 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1240.5619 P35580 P35580 1189 1198 MYH10 Myosin-10 yes yes 2 0.00036244 90.657 By MS/MS 1 1.1013 0.91528 NaN 1 Median NaN NaN NaN 0 0 Median 1.1013 0.91528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1425400 645860 779550 0 0 0 1425400 645860 779550 0 0 0 0 0 0 0 0 0 0 0 0 25495 2245 26851 135511 136275;136276 136276 2 NHEEEISTLR MQIEGLKEELAYLKKNHEEEISTLRGQVGG AYLKKNHEEEISTLRGQVGGQVSVEVDSAP K N H L R G 0 1 1 0 0 0 3 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1226.5891 CON__P08727;P08727;K7EMS3;C9JM50 CON__P08727 217 226 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 3.0882E-05 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 2 4 4 1.0972 1.1027 16.738 17 Median 1.0186 1.0333 9.1915 2 0 Median 1.8116 1.5807 NaN 1 0 Median 0.88553 0.91937 20.631 4 0 Median 1.3856 1.1947 1.549 2 0 Median 1.0248 1.0306 6.919 4 0 Median 1.4003 1.1674 7.5825 4 0 Median 102040000 46096000 55945000 3121500 1517600 1603900 10092000 3407900 6684100 43490000 21414000 22076000 8930100 3508700 5421400 27578000 12724000 14854000 8829200 3523700 5305500 + 25496 752 26852 135512;135513;135514;135515;135516;135517;135518;135519;135520;135521;135522;135523;135524;135525;135526;135527;135528 136277;136278;136279;136280;136281;136282;136283;136284;136285;136286;136287;136288;136289;136290;136291;136292;136293;136294;136295;136296;136297;136298;136299;136300;136301;136302 136293 26 NHEEEMKDLR MQIESLTEELAYLKKNHEEEMKDLRNVSTG AYLKKNHEEEMKDLRNVSTGDVNVEMNAAP K N H L R N 0 1 1 1 0 0 3 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 10 1 1299.5877 P13645;CON__P13645 P13645 286 295 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 2.5878E-18 155.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 13 6 8 6 3 0.018106 0.020237 104.21 36 Median 0.017387 0.017873 69.761 8 8 Median 0.023984 0.021876 64.473 9 9 Median 0.02262 0.025396 150.38 6 6 Median 0.01097 0.009961 120.77 8 8 Median 0.01196 0.013383 50.757 2 2 Median 0.08052 0.073391 53.118 3 3 Median 291510000 287030000 4484200 48391000 47808000 582370 76193000 75241000 952150 25864000 24589000 1275300 59789000 58653000 1135900 78049000 77768000 281100 3227200 2969800 257430 + 25497 756 26853 135529;135530;135531;135532;135533;135534;135535;135536;135537;135538;135539;135540;135541;135542;135543;135544;135545;135546;135547;135548;135549;135550;135551;135552;135553;135554;135555;135556;135557;135558;135559;135560;135561;135562;135563;135564;135565;135566;135567;135568;135569;135570;135571;135572 136303;136304;136305;136306;136307;136308;136309;136310;136311;136312;136313;136314;136315;136316;136317;136318;136319;136320;136321;136322;136323;136324;136325;136326;136327;136328;136329;136330;136331;136332;136333;136334;136335;136336;136337;136338;136339;136340;136341;136342;136343;136344;136345;136346;136347;136348;136349;136350;136351;136352;136353;136354;136355;136356 136328 54 NHEEEMLALR MQIEGLKEELAYLRKNHEEEMLALRGQTGG AYLRKNHEEEMLALRGQTGGDVNVEMDAAP K N H L R G 1 1 1 0 0 0 3 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 10 0 1240.587 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;K7ENW6 CON__P08779 254 263 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.01149 57.598 By MS/MS 1 0.62643 0.6079 NaN 1 Median 0.62643 0.6079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3407800 2204100 1203700 3407800 2204100 1203700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 25498 754 26854 135573 136357 136357 1 NHEEEMNALR MQIENLKEELAYLKKNHEEEMNALRGQVGG AYLKKNHEEEMNALRGQVGGEINVEMDAAP K N H L R G 1 1 2 0 0 0 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1241.5459 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9;K7ESE1;CON__Q6IFX2 CON__Q04695 221 230 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2;3 0.00047649 107.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 3 8 4 6 0.59998 0.52377 110.15 25 Median 0.36257 0.35472 NaN 1 0 Median 0.46469 0.39936 115.91 6 3 Median 1.4105 1.4186 2.9653 2 0 Median 0.34349 0.28948 125.85 7 4 Median 0.76136 0.78799 60.142 4 3 Median 0.6892 0.59405 26.078 5 1 Median 52923000 32326000 20597000 1236800 983540 253270 8363900 6032400 2331500 8024200 3485100 4539100 11290000 7794300 3495200 16367000 9459800 6907100 7641700 4570700 3070900 + 25499 768;739;787 26855 135574;135575;135576;135577;135578;135579;135580;135581;135582;135583;135584;135585;135586;135587;135588;135589;135590;135591;135592;135593;135594;135595;135596;135597;135598;135599;135600;135601;135602 136358;136359;136360;136361;136362;136363;136364;136365;136366;136367;136368;136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380;136381;136382;136383;136384 136376 27 NHEEEVKGLQAQIASSGLTVEVDAPK TEIEALKEELLFMKKNHEEEVKGLQAQIAS QIASSGLTVEVDAPKSQDLAKIMADIRAQY K N H P K S 3 0 1 1 0 2 4 2 1 1 2 2 0 0 1 2 1 0 0 3 0 0 26 1 2748.393 P05783;F8VZY9 P05783 216 241 KRT18 Keratin, type I cytoskeletal 18 yes no 3;4 5.629E-46 138.92 By MS/MS By MS/MS By MS/MS 2 3 1 1.0526 1.005 15.215 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94552 0.98382 14.836 2 0 Median 1.0508 0.99811 7.4446 3 0 Median 1.2456 1.3293 NaN 1 1 Median NaN NaN NaN 0 0 Median 93541000 42173000 51368000 0 0 0 0 0 0 61470000 27906000 33564000 23029000 10795000 12234000 9041400 3471400 5570100 0 0 0 25500 1869 26856 135603;135604;135605;135606;135607;135608 136385;136386;136387;136388;136389;136390;136391 136385 7 NHFAEIETELQAELVR KTSCADMQKMLFEERNHFAEIETELQAELV HFAEIETELQAELVRMEQQHQEKVLYLLSQ R N H V R M 2 1 1 0 0 1 4 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 16 0 1897.9534 O95239 O95239 907 922 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.0021802 29.341 By MS/MS 1 1.123 1.2127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.123 1.2127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1102000 471780 630250 0 0 0 0 0 0 1102000 471780 630250 0 0 0 0 0 0 0 0 0 25501 1757 26857 135609 136392 136392 1 NHFYQFGEIR YVGGLGDTITETDLRNHFYQFGEIRTITVV ETDLRNHFYQFGEIRTITVVQRQQCAFIQF R N H I R T 0 1 1 0 0 1 1 1 1 1 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1309.6204 Q9NW64 Q9NW64 250 259 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 0.00058327 107.47 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0768 1.061 5.0233 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.036 1.0844 NaN 1 0 Median 1.1121 0.96006 NaN 1 1 Median 1.0708 1.0705 1.3869 2 1 Median 1.3177 1.061 NaN 1 0 Median 42662000 21877000 20785000 0 0 0 0 0 0 8330300 5142300 3187900 1227800 610380 617440 28221000 13895000 14326000 4882400 2229100 2653300 25502 4146 26858 135610;135611;135612;135613;135614 136393;136394;136395;136396;136397 136395 5 NHIILQENAQHATR FAALEKTYYERLPYRNHIILQENAQHATRF RNHIILQENAQHATRFIALANVGNPEKKKY R N H T R F 2 1 2 0 0 2 1 0 2 2 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1643.8492 Q69YN2;A0A286YF56 Q69YN2 209 222 CWF19L1 CWF19-like protein 1 yes no 3;4 1.3676E-08 138.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 4 1 1.1754 1.1386 15.791 11 Median 1.1196 1.1173 1.3327 2 0 Median 1.2951 1.1203 13.652 2 0 Median 1.0199 1.0566 11.62 2 0 Median 1.3475 1.1395 23.565 4 0 Median NaN NaN NaN 0 0 Median 1.5893 1.384 NaN 1 0 Median 18274000 7636400 10637000 5386300 2312600 3073700 8334600 3420800 4913800 1273900 638610 635250 3229600 1241200 1988400 0 0 0 49283 23159 26123 25503 3129 26859 135615;135616;135617;135618;135619;135620;135621;135622;135623;135624;135625 136398;136399;136400;136401;136402;136403;136404;136405;136406;136407 136403 10 NHIPITEQGDAPR DLEERKNSLKKWLEKNHIPITEQGDAPRTL EKNHIPITEQGDAPRTLCVAGVLTIDPPYG K N H P R T 1 1 1 1 0 1 1 1 1 2 0 0 0 0 2 0 1 0 0 0 0 0 13 0 1446.7215 Q8WXD5 Q8WXD5 113 125 GEMIN6 Gem-associated protein 6 yes yes 2;3 0.00018732 67.519 By MS/MS By MS/MS By MS/MS 2 2 2 0.74747 0.71116 47.008 6 Median 0.81435 0.81548 20.413 2 0 Median 0.49586 0.42507 61.529 2 1 Median 0.82103 0.86101 25.984 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17633000 9281400 8351100 4268600 1987600 2281000 2289500 1383500 905970 11074000 5910300 5164200 0 0 0 0 0 0 0 0 0 25504 3517 26860 135626;135627;135628;135629;135630;135631 136408;136409;136410;136411;136412;136413 136408 6 NHIPVFSPALTDGSLGDMIFFHSYK KEINNPESVYYWAQKNHIPVFSPALTDGSL TDGSLGDMIFFHSYKNPGLVLDIVEAERGR K N H Y K N 1 0 1 2 0 0 0 2 2 2 2 1 1 3 2 3 1 0 1 1 0 0 25 0 2792.3632 Q5J8M5;A0A087WZK0;P49366;M0R1T4;M0R1T2;M0R0V2 Q5J8M5 227 251 DHPS Deoxyhypusine synthase yes no 3 0.030618 12.08 By MS/MS 1 0.65091 0.55452 NaN 1 Median NaN NaN NaN 0 0 Median 0.65091 0.55452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1082900 640700 442200 0 0 0 1082900 640700 442200 0 0 0 0 0 0 0 0 0 0 0 0 25505 95 26861 135632 136414 136414 1 NHIQLVK AAYQTGADQASITARNHIQLVKLQVEEVHQ DQASITARNHIQLVKLQVEEVHQLSRKAET R N H V K L 0 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 7 0 850.50249 Q9NR28 Q9NR28 185 191 DIABLO Diablo homolog, mitochondrial yes yes 2 0.015483 71.378 By matching By MS/MS By matching 2 1 1 1.203 1.119 14.139 4 Median 1.0527 1.006 0.96257 2 0 Median 1.5358 1.3229 NaN 1 0 Median 1.347 1.2362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4885300 2040300 2845000 1917900 917310 1000600 2578400 975190 1603200 389020 147800 241230 0 0 0 0 0 0 0 0 0 25506 4075 26862 135633;135634;135635;135636 136415;136416 136416 2 NHKEEMSQLTGQNSGDVNVEINVAPGK MQYETLQEELMALKKNHKEEMSQLTGQNSG NSGDVNVEINVAPGKDLTKTLNDMRQEYEQ K N H G K D 1 0 4 1 0 2 3 3 1 1 1 2 1 0 1 2 1 0 0 3 0 0 27 1 2894.3828 P35527;CON__P35527;K7EQQ3 P35527 291 317 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 1.4933E-60 132.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 2 5 11 5 0.086228 0.082734 104.24 15 Median 0.24349 0.24654 16.798 2 2 Median NaN NaN NaN 0 0 Median 0.075922 0.082734 145.35 3 3 Median 0.083754 0.077335 58.111 7 7 Median 0.11549 0.12938 151.25 3 3 Median NaN NaN NaN 0 0 Median 231790000 222670000 9117100 66284000 64196000 2088500 16972000 16972000 0 52347000 50541000 1806100 46057000 44703000 1354600 50129000 46261000 3867900 0 0 0 + 25507 2242 26863;26864 135637;135638;135639;135640;135641;135642;135643;135644;135645;135646;135647;135648;135649;135650;135651;135652;135653;135654;135655;135656;135657;135658;135659;135660;135661;135662;135663;135664;135665;135666 136417;136418;136419;136420;136421;136422;136423;136424;136425;136426;136427;136428;136429;136430;136431;136432;136433;136434;136435;136436;136437;136438;136439;136440;136441;136442;136443;136444;136445;136446 136434 977 30 NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK MQYETLQEELMALKKNHKEEMSQLTGQNSG VNVEINVAPGKDLTKTLNDMRQEYEQLIAK K N H T K T 1 0 4 2 0 2 3 3 1 1 2 3 1 0 1 2 2 0 0 3 0 0 31 2 3351.6365 P35527;CON__P35527;K7EQQ3 P35527 291 321 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4;5 6.0894E-90 148.66 By MS/MS By MS/MS By MS/MS By MS/MS 12 3 1 10 0.068469 0.075452 108.34 14 Median 0.05039 0.052821 131.31 8 8 Median NaN NaN NaN 0 0 Median 0.11794 0.13915 127.51 2 2 Median NaN NaN NaN 0 0 Median 0.10292 0.1121 65.692 4 4 Median NaN NaN NaN 0 0 Median 565950000 545020000 20933000 350910000 335530000 15375000 0 0 0 31500000 30330000 1169800 3176300 3176300 0 180370000 175980000 4387700 0 0 0 + 25508 2242 26865;26866 135667;135668;135669;135670;135671;135672;135673;135674;135675;135676;135677;135678;135679;135680;135681;135682;135683;135684;135685;135686;135687;135688;135689;135690;135691;135692 136447;136448;136449;136450;136451;136452;136453;136454;136455;136456;136457;136458;136459;136460;136461;136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473;136474 136455 977 28 NHLETLSR FAKQSNNVLVYDLLKNHLETLSRVAEETIK LVYDLLKNHLETLSRVAEETIKDYFEARLA K N H S R V 0 1 1 0 0 0 1 0 1 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 968.50394 Q99549 Q99549 721 728 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.012659 54.549 By MS/MS By matching 1 1 1.1758 1.1115 2.5133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0232 1.0919 NaN 1 0 Median 1.351 1.1314 NaN 1 0 Median 1721900 796670 925250 0 0 0 0 0 0 0 0 0 0 0 0 1459400 689040 770390 262490 107630 154860 25509 3752 26867 135693;135694 136475 136475 1 NHLLETTPK QDTCKIQTRQYKALRNHLLETTPKSEHKAV QYKALRNHLLETTPKSEHKAVLKRLKEEQT R N H P K S 0 0 1 0 0 0 1 0 1 0 2 1 0 0 1 0 2 0 0 0 0 0 9 0 1051.5662 Q7L7X3 Q7L7X3 742 750 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 2 0.020392 38.962 By MS/MS By MS/MS 1 1 0.81684 0.77682 7.434 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76703 0.81875 NaN 1 0 Median 0.86988 0.73704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1160700 661730 498950 0 0 0 0 0 0 660660 381110 279560 500020 280620 219400 0 0 0 0 0 0 25510 3227 26868 135695;135696 136476;136477;136478 136477 3 NHLLHVFDEYKR TDEVKFLTVLCSRNRNHLLHVFDEYKRISQ RNRNHLLHVFDEYKRISQKDIEQSIKSETS R N H K R I 0 1 1 1 0 0 1 0 2 0 2 1 0 1 0 0 0 0 1 1 0 0 12 1 1569.8052 P09525;Q6P452 P09525 203 214 ANXA4 Annexin A4;Annexin yes no 3 2.697E-05 90.614 By MS/MS By MS/MS 1 1 1.0597 1.0026 29.546 2 Median 0.80988 0.81355 NaN 1 0 Median 1.3865 1.2355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21744000 10879000 10866000 11916000 6580900 5334600 9828800 4297800 5530900 0 0 0 0 0 0 0 0 0 0 0 0 25511 1917 26869 135697;135698 136479;136480;136481 136479 3 NHLTQFSPHFK VSLDPHAQVAVGILRNHLTQFSPHFKSGSL GILRNHLTQFSPHFKSGSLAVDNADPILKI R N H F K S 0 0 1 0 0 1 0 0 2 0 1 1 0 2 1 1 1 0 0 0 0 0 11 0 1354.6782 P35573 P35573 865 875 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 4.2099E-05 82.417 By MS/MS By MS/MS 1 2 0.45697 0.43753 107.19 2 Median 0.96906 0.93368 NaN 1 0 Median 0.21549 0.20503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9331200 5588700 3742500 6811400 3538000 3273300 2519800 2050700 469170 0 0 0 0 0 0 0 0 0 0 0 0 25512 2243 26870 135699;135700;135701 136482;136483;136484 136483 3 NHNLALGR SEHQKLEENIDNIKRNHNLALGRQKGYEEE NIDNIKRNHNLALGRQKGYEEEIIHFKKEL R N H G R Q 1 1 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 893.48315 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1070 1077 RAD50 DNA repair protein RAD50 yes no 2 0.01349 79.939 By MS/MS By MS/MS By MS/MS 1 1 1 0.48761 0.50983 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48761 0.50983 NaN 1 1 Median NaN NaN NaN 0 0 Median 1660100 1098600 561520 0 0 0 0 0 0 0 0 0 0 0 0 1660100 1098600 561520 0 0 0 25513 3561 26871 135702;135703;135704 136485;136486;136487 136485 3 NHNSLLSLPQEPYSFSEPAQQAMR CVRWTQLGAFYPFMRNHNSLLSLPQEPYSF QEPYSFSEPAQQAMRKALTLRYALLPHLYT R N H M R K 2 1 2 0 0 3 2 0 1 0 3 0 1 1 3 4 0 0 1 0 0 0 24 0 2743.3024 P10253 P10253 673 696 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 3 7.7434E-12 51.645 By MS/MS 1 0.43535 0.4255 NaN 1 Median 0.43535 0.4255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2820800 1933000 887750 2820800 1933000 887750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25514 1935 26872 135705 136488 136488 1 NHPGLLLMDTTFR ILLREGPEGFARAVRNHPGLLLMDTTFRDA VRNHPGLLLMDTTFRDAHQSLLATRVRTHD R N H F R D 0 1 1 1 0 0 0 1 1 0 3 0 1 1 1 0 2 0 0 0 0 0 13 0 1513.7711 P11498;A0A494C016 P11498 559 571 PC Pyruvate carboxylase, mitochondrial yes no 3 0.00033779 56.951 By MS/MS By matching 1 1 1.1075 1.0076 10.048 2 Median 0.97059 0.93853 NaN 1 0 Median 1.2638 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6483300 3160700 3322600 4323300 2228800 2094600 2160000 931970 1228000 0 0 0 0 0 0 0 0 0 0 0 0 25515 1967 26873 135706;135707 136489;136490 136489 2 NHPQMIAVLVDK EGKLHVLRVMFEVWRNHPQMIAVLVDKMIR VWRNHPQMIAVLVDKMIRTQIVDCAAVANW R N H D K M 1 0 1 1 0 1 0 0 1 1 1 1 1 0 1 0 0 0 0 2 0 0 12 0 1363.7282 Q09161 Q09161 596 607 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 2.6971E-06 115.57 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.93235 0.85349 17.427 4 Median 0.7114 0.64838 NaN 1 0 Median 1.0339 0.90605 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92565 0.80398 NaN 1 0 Median 0.9391 0.96236 NaN 1 1 Median NaN NaN NaN 0 0 Median 23306000 12298000 11008000 9784900 5656000 4128900 3818200 2136500 1681700 0 0 0 1468100 786840 681230 8234700 3719000 4515700 0 0 0 25516 2747 26874 135708;135709;135710;135711 136491;136492 136492 2 NHPSFYVFNHR DATSELKNKTFDTLRNHPSFYVFNHRGRVL DTLRNHPSFYVFNHRGRVLFRPSDTANSSN R N H H R G 0 1 2 0 0 0 0 0 2 0 0 0 0 2 1 1 0 0 1 1 0 0 11 0 1416.6687 Q8N4V1 Q8N4V1 86 96 MMGT1 Membrane magnesium transporter 1 yes yes 2;3 3.0616E-05 135.79 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.1311 1.0235 7.6578 7 Median 1.0036 0.97691 8.3958 2 1 Median 1.1811 1.0093 1.9824 2 0 Median 1.0685 1.0828 8.2627 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5016 1.1377 NaN 1 0 Median 189370000 88911000 100460000 30862000 14795000 16068000 134040000 61857000 72185000 23384000 11821000 11563000 0 0 0 0 0 0 1079200 438740 640500 25517 3376 26875 135712;135713;135714;135715;135716;135717;135718 136493;136494;136495;136496;136497;136498;136499;136500;136501;136502;136503 136499 10 NHPWLELSDVHR PPFVARETLRAWQEKNHPWLELSDVHRETT QEKNHPWLELSDVHRETTENIRVTVIPFYM K N H H R E 0 1 1 1 0 0 1 0 2 0 2 0 0 0 1 1 0 1 0 1 0 0 12 0 1501.7426 Q9Y2S7;B4DEM9 Q9Y2S7 224 235 POLDIP2 Polymerase delta-interacting protein 2 yes no 3 5.3505E-09 116.54 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1466 1.0191 12.711 3 Median NaN NaN NaN 0 0 Median 1.3797 1.2007 NaN 1 0 Median 0.94728 0.93494 NaN 1 0 Median 1.1466 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8430000 4002700 4427300 0 0 0 766570 284500 482070 6429600 3181700 3247900 1233900 536480 697390 0 0 0 0 0 0 25518 4390 26876 135719;135720;135721;135722 136504;136505;136506;136507;136508 136504 5 NHQNEIIAMAALVHHSFALDK LVVMAFSMKTMQNAKNHQNEIIAMAALVHH IAMAALVHHSFALDKAAPKPPFQSHFCVVS K N H D K A 4 0 2 1 0 1 1 0 3 2 2 1 1 1 0 1 0 0 0 1 0 0 21 0 2358.1903 A0A087WU64;A6NMQ1;P09884 A0A087WU64 551 571 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 4 0.079261 3.5943 By MS/MS By matching 1 1 1.1127 1.0209 8.6209 2 Median 1.0111 0.96057 NaN 1 0 Median 1.2246 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3128900 1522500 1606400 2538600 1227700 1310900 590300 294780 295510 0 0 0 0 0 0 0 0 0 0 0 0 25519 26 26877 135723;135724 136509 136509 1 NHQNLLDSLEQYVK YECEESFTTLNVDIRNHQNLLDSLEQYVKG RNHQNLLDSLEQYVKGDLLEGANAYHCEKC R N H V K G 0 0 2 1 0 2 1 0 1 0 3 1 0 0 0 1 0 0 1 1 0 0 14 0 1699.8529 Q93008 Q93008 1746 1759 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 0.0082641 35.414 By MS/MS By MS/MS By matching 1 1 1 1.4404 1.3147 61.929 3 Median 1.4404 1.376 NaN 1 1 Median 1.4913 1.3147 NaN 1 0 Median 0.41764 0.46047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13603000 6173600 7429800 2836600 1133600 1703000 9420800 4225300 5195600 1345900 814700 531220 0 0 0 0 0 0 0 0 0 25520 3573 26878 135725;135726;135727 136510;136511 136511 2 NHQSAAEYNIFEGMELR LVIWDPDAVKIVSAKNHQSAAEYNIFEGME QSAAEYNIFEGMELRGAPLVVICQGKIMLE K N H L R G 2 1 2 0 0 1 3 1 1 1 1 0 1 1 0 1 0 0 1 0 0 0 17 0 2007.9109 Q14195 Q14195 424 440 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 3 8.8962E-06 51.265 By MS/MS By matching 1 1 1.0602 1.0673 2.2617 2 Median 1.0831 1.0504 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0378 1.0845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4579500 2144700 2434800 3460500 1620300 1840200 0 0 0 1119100 524400 594660 0 0 0 0 0 0 0 0 0 25521 2864 26879 135728;135729 136512;136513 136513 2 NHTLALTETGSVFAFGENK EGLSHEVIVSAACGRNHTLALTETGSVFAF ALTETGSVFAFGENKMGQLGLGNQTDAVPS R N H N K M 2 0 2 0 0 0 2 2 1 0 2 1 0 2 0 1 3 0 0 1 0 0 19 0 2035.0011 Q9P258 Q9P258 212 230 RCC2 Protein RCC2 yes yes 2;3 2.7339E-19 154.74 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 3 1 1.2065 1.0355 101.08 9 Median 4.7726 4.5214 183.06 2 1 Median 3.0878 2.6313 NaN 1 0 Median 1.0332 0.9992 4.7274 2 0 Median 1.2065 1.0355 6.3197 3 0 Median NaN NaN NaN 0 0 Median 0.56284 0.46177 NaN 1 0 Median 178740000 61878000 116860000 49275000 3675000 45600000 4153700 1008000 3145700 93666000 42605000 51061000 31292000 14353000 16939000 0 0 0 354450 236460 117990 25522 4214 26880 135730;135731;135732;135733;135734;135735;135736;135737;135738 136514;136515;136516;136517;136518;136519;136520;136521 136517 8 NHTLQEQVTQLTEK AGEGETAVLNQLQEKNHTLQEQVTQLTEKL KNHTLQEQVTQLTEKLKNQSESHKQAQENL K N H E K L 0 0 1 0 0 3 2 0 1 0 2 1 0 0 0 0 3 0 0 1 0 0 14 0 1667.8479 Q15075 Q15075 570 583 EEA1 Early endosome antigen 1 yes yes 2;3 7.9528E-11 121.02 By MS/MS By MS/MS 2 2 0.98651 0.91268 10.691 4 Median 0.87521 0.84593 11.283 2 1 Median 1.081 0.95927 7.5835 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32300000 16746000 15553000 22852000 12414000 10438000 9447400 4332200 5115200 0 0 0 0 0 0 0 0 0 0 0 0 25523 2926 26881 135739;135740;135741;135742 136522;136523;136524 136523 3 NHVAAHGQSLLK CTICGKAFLLESLLKNHVAAHGQSLLKCPR LLKNHVAAHGQSLLKCPRCNFESNFPRGFK K N H L K C 2 0 1 0 0 1 0 1 2 0 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1273.6891 Q96JM3 Q96JM3 755 766 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.061164 12.631 By MS/MS By matching 2 1 0.88376 0.91801 4.2176 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88292 0.91177 0.9646 2 0 Median 1.1509 0.97992 NaN 1 0 Median 1738500 822480 915980 0 0 0 0 0 0 0 0 0 0 0 0 1538700 731710 806980 199770 90772 109000 25524 3687 26882 135743;135744;135745 136525;136526 136525 2 NHYNEEMSNLR GTRKREYENELAKVRNHYNEEMSNLRNKYE AKVRNHYNEEMSNLRNKYETEINITKTTIK R N H L R N 0 1 3 0 0 0 2 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 11 0 1405.6045 P15924 P15924 1197 1207 DSP Desmoplakin yes yes 3 0.058527 28.624 By MS/MS By matching By matching By matching 2 1 1 1 1.2329 1.0308 38.442 5 Median NaN NaN NaN 0 0 Median 1.4143 1.2029 9.6015 2 0 Median NaN NaN NaN 0 0 Median 0.55203 0.48038 NaN 1 0 Median 0.82756 0.86616 NaN 1 0 Median 1.2329 1.0308 NaN 1 0 Median 9049000 4130700 4918300 0 0 0 5359800 2135800 3224000 0 0 0 1103600 592460 511120 1947400 1145400 802070 638250 257100 381150 25525 2021 26883 135746;135747;135748;135749;135750 136527 136527 0 NIAFFSTNCVEGTAR TRSPDFTNENPLETRNIAFFSTNCVEGTAR NIAFFSTNCVEGTARGIVVYTGDRTVMGRI R N I A R G 2 1 2 0 1 0 1 1 0 1 0 0 0 2 0 1 2 0 0 1 0 0 15 0 1685.7832 P05023 P05023 241 255 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.039043 24.343 By MS/MS 2 1.0875 0.93895 10.588 2 Median NaN NaN NaN 0 0 Median 1.0875 0.93895 10.588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3740000 1660800 2079200 0 0 0 3740000 1660800 2079200 0 0 0 0 0 0 0 0 0 0 0 0 25526 1857 26884 135751;135752 136528 136528 1 NIAIQSQFTR ALTEKNKELEIAQDRNIAIQSQFTRTKEEL IAQDRNIAIQSQFTRTKEELEAEKRDLIRT R N I T R T 1 1 1 0 0 2 0 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 10 0 1176.6251 P12270 P12270 106 115 TPR Nucleoprotein TPR yes yes 2 2.0222E-07 144.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1 1.045 1.0103 23.92 10 Median 1.0397 0.99382 1.7472 2 1 Median 1.506 1.2439 7.8796 2 0 Median 1.017 1.0875 10.743 3 0 Plateau 0.77943 0.73248 44.558 2 0 Median NaN NaN NaN 0 0 Median 1.2182 1.0144 NaN 1 0 Median 147280000 70333000 76944000 29457000 14551000 14906000 31008000 12103000 18905000 74266000 37695000 36571000 10600000 5151700 5448600 0 0 0 1946500 832040 1114400 25527 1978 26885 135753;135754;135755;135756;135757;135758;135759;135760;135761;135762 136529;136530;136531;136532;136533;136534;136535;136536;136537;136538;136539;136540;136541 136531 13 NIALDKTDDSNPR RVGTHGGTLSSYIVKNIALDKTDDSNPREA VKNIALDKTDDSNPREAILRHAKAAEDSPY K N I P R E 1 1 2 3 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 13 1 1457.711 Q9NW82 Q9NW82 591 603 WDR70 WD repeat-containing protein 70 yes yes 3 0.013769 25.718 By MS/MS By matching 1 1 0.43927 0.47618 49.359 2 Median 0.66418 0.67507 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.29053 0.33588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2627200 1912300 714900 958540 559920 398620 0 0 0 1668700 1352400 316280 0 0 0 0 0 0 0 0 0 25528 4147 26886 135763;135764 136542 136542 1 NIANPTAMLLSASNMLR FETGARHPFAQAVGRNIANPTAMLLSASNM ANPTAMLLSASNMLRHLNLEYHSSMIADAV R N I L R H 3 1 3 0 0 0 0 0 0 1 3 0 2 0 1 2 1 0 0 0 0 0 17 0 1815.9335 A0A087WZN1;O43837;A0A087X2E5;A0A0D9SG66 A0A087WZN1 318 334 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 2.1298E-05 64.55 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.9601 0.93515 12.751 4 Median 0.9436 0.93533 NaN 1 0 Median 0.842 0.7347 NaN 1 0 Median 0.97688 0.93496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2391 0.96838 NaN 1 0 Median 13778000 6754300 7023700 5381800 2728000 2653700 7208100 3423200 3784900 970890 505570 465330 0 0 0 0 0 0 217140 97432 119710 25529 96 26887 135765;135766;135767;135768 136543;136544;136545;136546 136545 4 NIAPNISR CKPRPLHKTCSLFMRNIAPNISRAEIISLC TCSLFMRNIAPNISRAEIISLCKRYPGFMR R N I S R A 1 1 2 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 8 0 883.48756 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 427 434 SRRT Serrate RNA effector molecule homolog yes no 2 0.00043992 102.71 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1 0.98353 0.86947 110.83 5 Median NaN NaN NaN 0 0 Median 0.084962 0.076426 NaN 1 0 Median 0.92675 0.99093 NaN 1 0 Median 1.0416 0.88638 7.8848 2 1 Median NaN NaN NaN 0 0 Median 1.0731 0.86947 NaN 1 1 Median 14166000 7030900 7135400 0 0 0 917330 839740 77591 4415300 2116600 2298700 4898100 2260300 2637700 0 0 0 3935500 1814200 2121300 25530 3879 26888 135769;135770;135771;135772;135773;135774;135775;135776 136547;136548;136549;136550;136551;136552 136552 6 NIAVGKDPLEGQR IKHVVLYPLVAKSLRNIAVGKDPLEGQRHC LRNIAVGKDPLEGQRHCCGVAQMREHSSLG R N I Q R H 1 1 1 1 0 1 1 2 0 1 1 1 0 0 1 0 0 0 0 1 0 0 13 1 1395.747 O00170 O00170 107 119 AIP AH receptor-interacting protein yes yes 3 0.0003267 60.628 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1898 1.0548 21.08 4 Median 0.88521 0.94835 NaN 1 0 Median 1.2744 1.1445 NaN 1 0 Median 1.3787 1.4994 NaN 1 0 Median 1.1108 0.9721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18074000 8354200 9720100 5285300 3035300 2250000 4985500 2024600 2960900 5858000 2497100 3360900 1945500 797260 1148200 0 0 0 0 0 0 25531 1445 26889 135777;135778;135779;135780 136553;136554;136555;136556;136557 136557 5 NIDDGTSDRPYSHALVAGIDR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL SDRPYSHALVAGIDRYPRKVTAAMGKKKIA K N I D R Y 2 2 1 4 0 0 0 2 1 2 1 0 0 0 1 2 1 0 1 1 0 0 21 1 2271.088 P61353;K7ELC7 P61353 28 48 RPL27 60S ribosomal protein L27 yes no 3 1.8685E-26 122.64 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 0.88667 0.88755 16.009 7 Median 0.88912 0.93195 NaN 1 0 Median 0.97019 0.88755 NaN 1 0 Median 0.83905 0.89034 4.5326 2 0 Median 0.96515 0.86421 NaN 1 0 Median 0.85402 0.95978 NaN 1 1 Median 0.69856 0.59934 NaN 1 0 Median 115010000 57781000 57230000 55073000 27852000 27221000 7845200 3816800 4028400 31316000 16079000 15236000 2864100 1390500 1473600 13903000 6975900 6927200 4010100 1667000 2343100 25532 2557 26890 135781;135782;135783;135784;135785;135786;135787 136558;136559;136560;136561;136562;136563;136564 136560 7 NIDDGTSDRPYSHALVAGIDRYPR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL PYSHALVAGIDRYPRKVTAAMGKKKIAKRS K N I P R K 2 3 1 4 0 0 0 2 1 2 1 0 0 0 2 2 1 0 2 1 0 0 24 2 2687.3052 P61353;K7ELC7 P61353 28 51 RPL27 60S ribosomal protein L27 yes no 4 1.5006E-12 60.765 By MS/MS By MS/MS By matching 1 1 1 0.72195 0.85794 15.798 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72195 0.85794 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68856 0.78391 NaN 1 0 Median 1.1576 1.066 NaN 1 0 Median 39980000 21882000 18098000 0 0 0 0 0 0 20550000 11188000 9362100 0 0 0 17681000 10110000 7571200 1748300 583690 1164600 25533 2557 26891 135788;135789;135790 136565;136566 136565 2 NIDEHANEDVER ITNGKSFENISKWLRNIDEHANEDVERMLL WLRNIDEHANEDVERMLLGNKCDMDDKRVV R N I E R M 1 1 2 2 0 0 3 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1439.6277 P61026 P61026 106 117 RAB10 Ras-related protein Rab-10 yes yes 2;3 0.00015805 130.94 By MS/MS By MS/MS By matching 5 5 1 1.0665 0.98174 13.67 11 Median 0.986 0.98174 20.18 5 1 Median 1.0953 0.92609 5.6076 5 0 Median NaN NaN NaN 0 0 Median 1.2214 1.0005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18983000 8922100 10061000 6811400 3365700 3445800 11823000 5412700 6410200 0 0 0 348590 143650 204930 0 0 0 0 0 0 25534 2540 26892 135791;135792;135793;135794;135795;135796;135797;135798;135799;135800;135801 136567;136568;136569;136570;136571;136572;136573;136574;136575 136575 9 NIDNFLNRYEK SLVLDLDFPALRKNKNIDNFLNRYEKIVKK RKNKNIDNFLNRYEKIVKKIRGLQMKAEDY K N I E K I 0 1 3 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 11 1 1424.7048 O75116;D6REE7 O75116 67 77 ROCK2 Rho-associated protein kinase 2 yes no 3 0.052243 17.167 By MS/MS By matching 1 1 1.0538 1.1336 5.843 2 Median 1.0705 1.0877 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0373 1.1814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5062100 2616000 2446100 2973100 1525500 1447600 0 0 0 2089000 1090500 998510 0 0 0 0 0 0 0 0 0 25535 1644 26893 135802;135803 136576 136576 1 NIDNPALADIYTEHAHQVVVAK GNNFLYTNGKCVILRNIDNPALADIYTEHA ADIYTEHAHQVVVAKYAPSGFYIASGDVSG R N I A K Y 4 0 2 2 0 1 1 0 2 2 1 1 0 0 1 0 1 0 1 3 0 0 22 0 2417.2339 O75083;D6RD66 O75083 44 65 WDR1 WD repeat-containing protein 1 yes no 3;4 4.0269E-10 61.181 By MS/MS By matching By MS/MS By matching 4 1 2 1 0.8923 0.86517 25.639 8 Median 0.86136 0.83512 37.316 4 1 Median 0.95609 0.82995 NaN 1 0 Median 0.8923 0.87529 1.7576 2 1 Median 1.2018 1.0332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107190000 45306000 61881000 85240000 34206000 51034000 1102000 563260 538750 20080000 10240000 9840400 764690 296350 468340 0 0 0 0 0 0 25536 1643 26894 135804;135805;135806;135807;135808;135809;135810;135811 136577;136578;136579;136580;136581;136582;136583 136578 7 NIDPVKNKEINSDQATQGNISSDR NEENPVRIISVTPVKNIDPVKNKEINSDQA INSDQATQGNISSDRGKKRTVTAAGAENIQ K N I D R G 1 1 4 3 0 2 1 1 0 3 0 2 0 0 1 3 1 0 0 1 0 0 24 2 2642.2896 Q29RF7 Q29RF7 1212 1235 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 4 8.0064E-12 52.483 By MS/MS 1 0.67105 0.76465 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67105 0.76465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5844600 3479900 2364600 0 0 0 0 0 0 5844600 3479900 2364600 0 0 0 0 0 0 0 0 0 25537 3003 26895 135812 136584;136585 136585 2 NIDQAVTAALETR RLHNKLLPNVTTVERNIDQAVTAALETRHH ERNIDQAVTAALETRHHHTQIASTFIAVVQ R N I T R H 3 1 1 1 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 13 0 1400.726 B5MCK8;A6NGU5;P36268;P19440;B5MC36;A0A0C4DG87;B5MC34;A0A494C1J8;Q14390;B5MD39 B5MCK8 508 520 GGT2;GGT3P;GGT1;GGTLC2;GGTLC3 Putative gamma-glutamyltranspeptidase 3;Putative gamma-glutamyltranspeptidase 3 heavy chain;Putative gamma-glutamyltranspeptidase 3 light chain;Inactive gamma-glutamyltranspeptidase 2;Gamma-glutamyltranspeptidase 1;Gamma-glutamyltranspeptidase 1 heavy chain;Gamma-glutamyltranspeptidase 1 light chain;Gamma-glutamyltransferase light chain 2;Putative gamma-glutamyltransferase light chain 3 yes no 2 0.00026068 90.685 By MS/MS 1 0.93001 0.87845 NaN 1 Median 0.93001 0.87845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5835900 3213500 2622500 5835900 3213500 2622500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25538 515 26896 135813 136586 136586 1 NIDQCSEIVK LGRSEYVEKFYRIKKNIDQCSEIVKCSVSS YRIKKNIDQCSEIVKCSVSSLGFNVH____ K N I V K C 0 0 1 1 1 1 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1204.5758 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1292 1301 RAD50 DNA repair protein RAD50 yes no 2 0.017044 38.086 By MS/MS By matching 1 1 0.97993 0.79558 121.84 2 Median NaN NaN NaN 0 0 Median 2.1711 1.883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4423 0.33613 NaN 1 0 Median 3657900 849030 2808900 0 0 0 3228100 532180 2695900 0 0 0 0 0 0 0 0 0 429820 316850 112970 25539 3561 26897 135814;135815 136587 136587 1 NIDSKLHVTLYNCSFGR NETLPLHLYVKSYGKNIDSKLHVTLYNCSF DSKLHVTLYNCSFGRSDCSLCRAANPDYRC K N I G R S 0 1 2 1 1 0 0 1 1 1 2 1 0 1 0 2 1 0 1 1 0 0 17 1 2022.9945 O15031 O15031 748 764 PLXNB2 Plexin-B2 yes yes 3 0.066706 9.5303 By MS/MS By matching 1 1 1.1265 1.1133 11.053 2 Median 1.0156 1.0296 NaN 1 0 Median 1.2496 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4226900 1649200 2577700 3457500 1334600 2122900 769370 314580 454780 0 0 0 0 0 0 0 0 0 0 0 0 25540 1514 26898 135816;135817 136588 136588 1 NIEDVIAQGIGK DDDRLNKVISELNGKNIEDVIAQGIGKLAS NGKNIEDVIAQGIGKLASVPAGGAVAVSAA K N I G K L 1 0 1 1 0 1 1 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1255.6772 P05387;H0YDD8 P05387 50 61 RPLP2 60S acidic ribosomal protein P2 no no 2 3.6707E-06 111.65 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 1 3 2 1.1544 1.0778 20.849 14 Median 1.16 1.0658 4.7727 3 0 Median 1.1488 0.94272 5.3012 3 0 Median 1.1302 1.0938 2.0187 2 0 Median 0.9294 0.86571 NaN 1 0 Median 1.1738 1.2791 31.036 3 1 Median 1.3569 1.0951 2.3136 2 0 Median 499220000 223210000 276000000 236460000 107120000 129340000 45769000 20953000 24815000 106730000 48492000 58233000 116580 56351 60225 87162000 36754000 50408000 22984000 9840400 13144000 25541 1864;1175 26899 135818;135819;135820;135821;135822;135823;135824;135825;135826;135827;135828;135829;135830;135831 136589;136590;136591;136592;136593;136594;136595;136596;136597;136598;136599;136600;136601;136602;136603;136604;136605;136606;136607;136608;136609;136610 136597 22 NIEDYIHR DIQDVSMVVNYDMAKNIEDYIHRIGRTGRA VNYDMAKNIEDYIHRIGRTGRAGKSGVAIT K N I H R I 0 1 1 1 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 8 0 1058.5145 Q9BUQ8 Q9BUQ8 744 751 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.011256 57.281 By MS/MS By matching By matching 1 1 1 1.0619 1.0268 6.2615 3 Median 1.0619 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87549 0.92857 NaN 1 0 Median 1.2249 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21156000 9866500 11290000 3945200 1783700 2161500 0 0 0 13937000 7074900 6862400 3273700 1007900 2265800 0 0 0 0 0 0 25542 3842 26900 135832;135833;135834 136611 136611 1 NIEEHASADVEK ITNEKSFDNIRNWIRNIEEHASADVEKMIL WIRNIEEHASADVEKMILGNKCDVNDKRQV R N I E K M 2 0 1 1 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1340.6208 P61006 P61006 105 116 RAB8A Ras-related protein Rab-8A yes yes 2;3 7.461E-06 143.97 By MS/MS By MS/MS By MS/MS By MS/MS 7 6 2 2 1.1061 0.972 15.828 16 Median 1.014 0.97736 6.9423 7 0 Median 1.1183 0.93603 19.235 5 0 Median 1.3508 1.2895 1.419 2 0 Median 1.1577 0.95438 1.8104 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42789000 19084000 23705000 14076000 6673500 7402100 25035000 10833000 14201000 2647100 1104800 1542300 1031900 472690 559160 0 0 0 0 0 0 25543 2535 26901 135835;135836;135837;135838;135839;135840;135841;135842;135843;135844;135845;135846;135847;135848;135849;135850;135851 136612;136613;136614;136615;136616;136617;136618;136619;136620;136621;136622;136623;136624;136625 136622 14 NIEELQQQNQR SSSSEVISQHLVSYRNIEELQQQNQRLLVA VSYRNIEELQQQNQRLLVALRELGETRERE R N I Q R L 0 1 2 0 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1398.6852 P12270 P12270 542 552 TPR Nucleoprotein TPR yes yes 2 1.8627E-21 193.41 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 1 1.241 1.1551 10.453 9 Median 1.1722 1.176 NaN 1 0 Median 1.3442 1.1294 7.5242 2 0 Median 0.93782 1.0371 15.245 2 0 Median 1.2748 1.1154 15.187 2 1 Median 1.241 1.296 NaN 1 0 Median 1.3652 1.1358 NaN 1 0 Median 24494000 10288000 14205000 1136600 436060 700490 9330900 3633700 5697300 8262900 3638800 4624100 2261400 1009300 1252100 1168500 587400 581150 2333300 983210 1350000 25544 1978 26902 135852;135853;135854;135855;135856;135857;135858;135859;135860 136626;136627;136628;136629;136630;136631;136632;136633;136634;136635;136636;136637 136628 12 NIEIDSPYEISR IDSLTVKIILPEGAKNIEIDSPYEISRAPD GAKNIEIDSPYEISRAPDELHYTYLDTFGR K N I S R A 0 1 1 1 0 0 2 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 12 0 1434.6991 P04843;B7Z4L4 P04843 380 391 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.93277 0.83556 5.1718 8 Median 0.93774 0.87937 7.4213 3 0 Plateau 0.93943 0.83261 6.0261 3 0 Median 0.81466 0.82581 NaN 1 0 Median 1.0091 0.84349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112900000 58347000 54553000 73134000 38284000 34849000 19322000 9014000 10308000 17858000 9770900 8087100 2587000 1278000 1309100 0 0 0 0 0 0 25545 1853 26903 135861;135862;135863;135864;135865;135866;135867;135868 136638;136639;136640;136641;136642;136643;136644 136640 6 NIELAVMR LVIKALLEVVQSGGKNIELAVMRRDQSLKI VVQSGGKNIELAVMRRDQSLKILNPEEIEK K N I M R R 1 1 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 8 0 944.51134 O14818;H0Y586 O14818 205 212 PSMA7 Proteasome subunit alpha type-7 yes no 2 0.0034153 97.602 By MS/MS By MS/MS By MS/MS 4 2 2 1.1877 1.1006 23.774 8 Median 1.1877 1.1451 26.287 4 1 Median 1.261 1.0665 6.3784 2 0 Median 0.97131 0.92594 18.566 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128810000 58650000 70156000 91802000 41293000 50509000 21713000 9410800 12302000 15291000 7945800 7345100 0 0 0 0 0 0 0 0 0 25546 1497 26904;26905 135869;135870;135871;135872;135873;135874;135875;135876 136645;136646;136647;136648;136649;136650;136651;136652 136647 482 8 NIEMTQEDVR DRGPVLEALVARAIRNIEMTQEDVRLIGLS ARAIRNIEMTQEDVRLIGLSATLPNYEDVA R N I V R L 0 1 1 1 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.566 O75643;A0A494C1A5 O75643 638 647 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 2.2306E-05 145.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 2 0.90113 0.92398 14.84 14 Median 0.96181 0.93923 23.311 2 0 Median 1.0338 0.8712 29.775 2 0 Median 0.86974 0.94807 10.259 3 0 Plateau 1.2353 1.0876 2.2843 2 0 Median 0.89029 0.93428 4.1074 3 0 Median 0.97187 0.80004 10.501 2 0 Median 117530000 60528000 56998000 11238000 5664600 5573700 17324000 8253500 9070500 48649000 25009000 23641000 15352000 6637200 8714500 20922000 12713000 8209000 4040400 2251000 1789300 25547 1688 26906;26907 135877;135878;135879;135880;135881;135882;135883;135884;135885;135886;135887;135888;135889;135890 136653;136654;136655;136656;136657;136658;136659;136660;136661;136662;136663;136664;136665;136666;136667;136668;136669;136670;136671 136657 556 19 NIEPTHAPFIEK KQPDVDRVTKTYKRKNIEPTHAPFIEKSRS KRKNIEPTHAPFIEKSRSGGRKSLSQPTPP K N I E K S 1 0 1 0 0 0 2 0 1 2 0 1 0 1 2 0 1 0 0 0 0 0 12 0 1394.7194 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314 H3BPE1 7049 7060 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0037527 68.132 By MS/MS 1 1.191 1.1912 NaN 1 Median 1.191 1.1912 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7982700 4171100 3811600 7982700 4171100 3811600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25548 1220 26908 135891 136672 136672 1 NIEVMNSFELLSHTVEEK PVQVIGALIGKQEGRNIEVMNSFELLSHTV VMNSFELLSHTVEEKIIIDKEYYYTKEEQF R N I E K I 0 0 2 0 0 0 4 0 1 1 2 1 1 1 0 2 1 0 0 2 0 0 18 0 2118.0303 Q7L5N1;E7EM64 Q7L5N1 80 97 COPS6 COP9 signalosome complex subunit 6 yes no 3 1.0188E-06 78.661 By MS/MS By matching 1 1 1.1583 1.052 6.4974 2 Median NaN NaN NaN 0 0 Median 1.1949 1.0048 NaN 1 0 Median 1.1228 1.1015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9003200 3658700 5344500 0 0 0 8195000 3308500 4886500 808190 350210 457980 0 0 0 0 0 0 0 0 0 25549 855 26909 135892;135893 136673;136674 136674 2 NIEYPVDLEISK RFVYEKTGGCQKLIKNIEYPVDLEISKELL LIKNIEYPVDLEISKELLSPGVKNKNFKCH K N I S K E 0 0 1 1 0 0 2 0 0 2 1 1 0 0 1 1 0 0 1 1 0 0 12 0 1418.7293 Q14694;H3BQP1 Q14694 703 714 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 2 0.0014577 52.725 By MS/MS 1 1.0793 1.0579 NaN 1 Median 1.0793 1.0579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4249400 1707700 2541700 4249400 1707700 2541700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25550 2894 26910 135894 136675;136676 136675 2 NIFLKDQNIFVQK KSGSLENVPNVGVNKNIFLKDQNIFVQKLL NKNIFLKDQNIFVQKLLGQFSEKELAAEKK K N I Q K L 0 0 2 1 0 2 0 0 0 2 1 2 0 2 0 0 0 0 0 1 0 0 13 1 1605.8879 P53004 P53004 249 261 BLVRA Biliverdin reductase A yes yes 2;3 0.00042733 93.096 By MS/MS 3 1.3795 1.3395 10.532 3 Plateau 1.3795 1.3395 10.532 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36502000 14553000 21949000 36502000 14553000 21949000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25551 2463 26911 135895;135896;135897 136677;136678;136679 136679 2 NIFLNQVLAEINK AKQCPLREFLTVYIKNIFLNQVLAEINKEI IKNIFLNQVLAEINKEIEGVTKTSDPLKIL K N I N K E 1 0 3 0 0 1 1 0 0 2 2 1 0 1 0 0 0 0 0 1 0 0 13 0 1514.8457 Q96A65 Q96A65 534 546 EXOC4 Exocyst complex component 4 yes yes 2 0.027199 27.115 By matching By MS/MS 1 2 0.88221 0.90864 9.8324 3 Median 0.76221 0.77442 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88605 0.91745 1.3654 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2012000 1067900 944070 653380 392560 260820 0 0 0 1358600 675360 683240 0 0 0 0 0 0 0 0 0 25552 3595 26912 135898;135899;135900 136680 136680 1 NIFNISLQR EFKTLSEEEIEKVLKNIFNISLQRKLVPKH IEKVLKNIFNISLQRKLVPKHGDRFFTI__ K N I Q R K 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1103.6087 F5H5R8;P18440 F5H5R8 331 339 NAT1 Arylamine N-acetyltransferase 1 yes no 2 0.044161 50.607 By MS/MS 2 0.96818 0.93464 NaN 1 Median 0.96818 0.93464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2382600 1100900 1281600 2382600 1100900 1281600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25553 1038 26913 135901;135902 136681;136682 136682 2 NIFPSNLVSAAFR APSKEVLDSFLDLARNIFPSNLVSAAFRSY ARNIFPSNLVSAAFRSYSTTYEERNITGTR R N I F R S 2 1 2 0 0 0 0 0 0 1 1 0 0 2 1 2 0 0 0 1 0 0 13 0 1434.7619 Q15758;M0QXM4;M0QX44 Q15758 190 202 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 4.8234E-07 107.83 By MS/MS By MS/MS 5 6 0.81519 0.70473 23.857 11 Median 0.99953 0.98638 8.7408 5 1 Median 0.76274 0.6558 9.0645 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28360000 14919000 13441000 13996000 6628300 7367700 14364000 8290300 6073600 0 0 0 0 0 0 0 0 0 0 0 0 25554 2968 26914 135903;135904;135905;135906;135907;135908;135909;135910;135911;135912;135913 136683;136684;136685;136686;136687;136688;136689;136690;136691;136692;136693;136694;136695;136696;136697;136698;136699;136700;136701;136702;136703;136704;136705;136706;136707 136683 25 NIFSVPEIVR VVQHSQLAAAVENLKNIFSVPEIVRETQDL VENLKNIFSVPEIVRETQDLIEQGALLQAH K N I V R E 0 1 1 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 2 0 0 10 0 1172.6554 O60645;D6RB59 O60645 118 127 EXOC3 Exocyst complex component 3 yes no 2 0.0029636 70.919 By MS/MS 1 1.0824 1.0627 NaN 1 Median 1.0824 1.0627 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2490700 1060900 1429800 2490700 1060900 1429800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25555 1623 26915 135914 136708 136708 1 NIGENEGGIDK VDFQRRYKQFSQILKNIGENEGGIDKFSRG QILKNIGENEGGIDKFSRGYESFGVHRCAD K N I D K F 0 0 2 1 0 0 2 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0 11 0 1144.536 Q04446;E9PGM4 Q04446 58 68 GBE1 1,4-alpha-glucan-branching enzyme yes no 2 0.0011922 60.398 By MS/MS 1 0.88553 0.76283 NaN 1 Median NaN NaN NaN 0 0 Median 0.88553 0.76283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2773000 1342800 1430200 0 0 0 2773000 1342800 1430200 0 0 0 0 0 0 0 0 0 0 0 0 25556 2711 26916 135915 136709 136709 1 NIGENEGGIDKFSR VDFQRRYKQFSQILKNIGENEGGIDKFSRG KNIGENEGGIDKFSRGYESFGVHRCADGGL K N I S R G 0 1 2 1 0 0 2 3 0 2 0 1 0 1 0 1 0 0 0 0 0 0 14 1 1534.7376 Q04446;E9PGM4 Q04446 58 71 GBE1 1,4-alpha-glucan-branching enzyme yes no 3 0.0002973 55.213 By MS/MS 2 0.87017 0.88334 22.908 2 Median 0.87017 0.88334 22.908 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10394000 4943800 5450600 10394000 4943800 5450600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25557 2711 26917 135916;135917 136710;136711;136712 136712 3 NIGISAHIDSGK CRWSSSGVIPNEKIRNIGISAHIDSGKTTL KIRNIGISAHIDSGKTTLTERVLYYTGRIA R N I G K T 1 0 1 1 0 0 0 2 1 3 0 1 0 0 0 2 0 0 0 0 0 0 12 0 1210.6306 Q96RP9;F8WAU4;C9IZ01 Q96RP9 48 59 GFM1 Elongation factor G, mitochondrial yes no 2;3 0.00062094 66.595 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 1.0928 1.0652 19.205 7 Median 1.081 1.0652 21.87 3 0 Median 1.083 0.94896 NaN 1 1 Median 1.2862 1.3672 NaN 1 0 Median 1.2905 1.1256 24.216 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13306000 5962800 7343100 5369000 2571600 2797400 3849200 1893400 1955800 1908000 531920 1376100 2179700 965920 1213800 0 0 0 0 0 0 25558 3728 26918 135918;135919;135920;135921;135922;135923;135924 136713;136714;136715;136716;136717;136718;136719 136714 7 NIGNTFFK LKDVDKILLITEDLKNIGNTFFKSQNWEMA LITEDLKNIGNTFFKSQNWEMAIKKYAEVL K N I F K S 0 0 2 0 0 0 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 8 0 939.48142 Q08752 Q08752 228 235 PPID Peptidyl-prolyl cis-trans isomerase D yes yes 2 0.054439 33.797 By MS/MS By matching By matching 1 1 1 1.2334 1.079 18.88 3 Median 1.1555 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.366 1.4656 NaN 1 0 Median 1.2334 1.0386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9987600 4573100 5414500 5381400 2516200 2865300 0 0 0 3708100 1603400 2104700 898060 453530 444530 0 0 0 0 0 0 25559 2742 26919 135925;135926;135927 136720 136720 1 NIGVDNPAAK DASLMVTNDGATILKNIGVDNPAAKVLVDM ATILKNIGVDNPAAKVLVDMSRVQDDEVGD K N I A K V 2 0 2 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 10 0 997.51926 P78371;F5GWF6;F8VQ14 P78371 73 82 CCT2 T-complex protein 1 subunit beta yes no 2 0.0017834 62.582 By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 1 0.81448 0.73976 11.867 6 Median 0.85075 0.80137 10.5 2 1 Median 0.86787 0.73538 NaN 1 0 Median 0.78757 0.80908 NaN 1 0 Median 0.84104 0.73552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73509 0.60754 NaN 1 0 Median 33909000 17870000 16039000 15696000 8220900 7474800 12615000 6466600 6148600 1824200 937160 887080 460930 274320 186610 0 0 0 3313100 1970800 1342300 25560 2644 26920 135928;135929;135930;135931;135932;135933 136721;136722;136723;136724;136725;136726 136725 6 NIHESVSAQIR AARHPWIAGDTALNKNIHESVSAQIRKNFA ALNKNIHESVSAQIRKNFAKSKWRQAFNAT K N I I R K 1 1 1 0 0 1 1 0 1 2 0 0 0 0 0 2 0 0 0 1 0 0 11 0 1252.6524 A0A087WUR6;Q8IU85 A0A087WUR6 194 204 CAMK1D Calcium/calmodulin-dependent protein kinase type 1D yes no 3 0.0029325 56.548 By MS/MS 2 0.91008 0.91148 NaN 1 Median 0.91008 0.91148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2652700 1349100 1303600 2652700 1349100 1303600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25561 34 26921 135934;135935 136727;136728 136727 2 NIHHHQILAINR VDKFLLYQHFSCNIRNIHHHQILAINRGEN NIRNIHHHQILAINRGENLKVLTVKVNISD R N I N R G 1 1 2 0 0 1 0 0 3 3 1 0 0 0 0 0 0 0 0 0 0 0 12 0 1464.8062 Q8N5C6 Q8N5C6 430 441 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 0.00016042 72.652 By MS/MS By MS/MS 2 1 0.93496 0.99388 19.053 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83643 0.90058 13.941 2 0 Median 1.402 1.1945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4306200 2399000 1907200 0 0 0 0 0 0 2735700 1748900 986840 1570500 650100 920360 0 0 0 0 0 0 25562 3377 26922 135936;135937;135938 136729;136730;136731;136732 136731 4 NIHLNLDR EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG AEYGEIKNIHLNLDRRTGYLKGYTLVEYET K N I D R R 0 1 2 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 993.53558 Q9Y5S9;A0A0J9YW13 Q9Y5S9 101 108 RBM8A RNA-binding protein 8A yes no 2 0.00098289 95.531 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 1.0558 1.0564 13.353 9 Median 0.97463 0.94258 16.12 2 0 Median 1.3314 1.1049 NaN 1 0 Median 1.0465 1.0056 17.693 2 2 Median NaN NaN NaN 0 0 Median 0.90222 0.90824 15.663 3 2 Median 1.3704 1.1009 NaN 1 0 Median 72912000 36547000 36365000 7211400 3067700 4143700 2489400 927550 1561800 16723000 8703100 8020000 0 0 0 37328000 20251000 17077000 9160300 3597200 5563100 25563 4469 26923 135939;135940;135941;135942;135943;135944;135945;135946;135947 136733;136734;136735;136736;136737;136738;136739;136740;136741;136742 136736 10 NIHLNLDRR EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG EYGEIKNIHLNLDRRTGYLKGYTLVEYETY K N I R R T 0 2 2 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1149.6367 Q9Y5S9;A0A0J9YW13 Q9Y5S9 101 109 RBM8A RNA-binding protein 8A yes no 2 0.039155 37.021 By MS/MS 2 0.90631 1.0006 17.298 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90631 1.0006 17.298 2 0 Median NaN NaN NaN 0 0 Median 7438200 3757400 3680800 0 0 0 0 0 0 0 0 0 0 0 0 7438200 3757400 3680800 0 0 0 25564 4469 26924 135948;135949 136743 136743 1 NIHPIYNIK SGLKEVRKVVLDTMKNIHPIYNIKSLMIKR VLDTMKNIHPIYNIKSLMIKRELAKDSELR K N I I K S 0 0 2 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1110.6186 Q13601 Q13601 212 220 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.00049504 120.49 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.88783 0.69683 14.675 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77934 0.75798 NaN 1 0 Median 0.71406 0.64061 NaN 1 1 Median 0.89394 0.85406 NaN 1 0 Median 0.76277 0.62627 NaN 1 0 Median 42881000 23650000 19230000 0 0 0 0 0 0 8413100 4601500 3811500 6485500 3954300 2531200 20457000 10976000 9480900 7525500 4119000 3406600 25565 2830 26925 135950;135951;135952;135953 136744;136745;136746;136747;136748;136749 136744 6 NIIGVIPYFPYSK ELLIMAYALKTACARNIIGVIPYFPYSKQS ARNIIGVIPYFPYSKQSKMRKRGSIVCKLL R N I S K Q 0 0 1 0 0 0 0 1 0 3 0 1 0 1 2 1 0 0 2 1 0 0 13 0 1509.8232 B4DP31;Q14558;C9J168;C9JUN4;C9JKT9;C9JNQ3 B4DP31 17 29 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 2 0.002783 46.606 By MS/MS By MS/MS By matching 2 2 1 0.89675 0.7999 68.804 5 Median 1.666 1.5574 94.23 2 0 Median 1.0304 0.88352 20.171 2 1 Median 0.45106 0.47838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11858000 6073600 5784300 8725300 4444200 4281100 3027600 1559500 1468100 104980 69939 35040 0 0 0 0 0 0 0 0 0 25566 600 26926 135954;135955;135956;135957;135958 136750;136751;136752 136751 3 NIIGYFEQK IRDLAEITTLDRSKRNIIGYFEQKDSDNYR LDRSKRNIIGYFEQKDSDNYRVFERVANIL R N I Q K D 0 0 1 0 0 1 1 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 9 0 1110.571 Q9BS26 Q9BS26 162 170 ERP44 Endoplasmic reticulum resident protein 44 yes yes 2 0.0070414 52.716 By MS/MS 1 1.1555 1.0692 NaN 1 Median 1.1555 1.0692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13456000 6353800 7101800 13456000 6353800 7101800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25567 3809 26927 135959 136753;136754 136754 2 NIIHGSDSVESAEK KPGTIRGDFCIQVGRNIIHGSDSVESAEKE RNIIHGSDSVESAEKEIGLWFHPEELVDYT R N I E K E 1 0 1 1 0 0 2 1 1 2 0 1 0 0 0 3 0 0 0 1 0 0 14 0 1484.7107 P15531 P15531 115 128 NME1 Nucleoside diphosphate kinase A yes yes 2;3 2.5069E-16 184.34 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 1.8271 1.5619 92.577 9 Median 1.2124 1.1333 3.5455 2 0 Median 2.4542 2.0575 38.227 4 0 Median 1.6524 1.5737 37.375 2 0 Median 25.715 21.357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 572000000 218650000 353350000 349580000 154360000 195220000 153650000 45882000 107770000 44744000 17316000 27428000 24020000 1088000 22932000 0 0 0 0 0 0 25568 2018 26928 135960;135961;135962;135963;135964;135965;135966;135967;135968 136755;136756;136757;136758;136759;136760;136761;136762;136763;136764;136765;136766;136767;136768;136769;136770;136771;136772 136758 18 NIIHGSDSVK KPGTIRGDFCIQVGRNIIHGSDSVKSAEKE IQVGRNIIHGSDSVKSAEKEISLWFKPEEL R N I V K S 0 0 1 1 0 0 0 1 1 2 0 1 0 0 0 2 0 0 0 1 0 0 10 0 1068.5564 Q32Q12;P22392;O60361 Q32Q12 255 264 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.00033827 111.61 By MS/MS By MS/MS By MS/MS 4 2 2 1.3206 1.159 19.185 8 Median 1.5282 1.4147 12.976 4 0 Median 1.3199 1.1138 2.1236 2 0 Median NaN NaN NaN 0 0 Median 1.1906 0.97588 11.283 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78111000 33539000 44572000 26299000 11313000 14987000 50817000 21772000 29045000 0 0 0 994160 453810 540350 0 0 0 0 0 0 25569 3008 26929 135969;135970;135971;135972;135973;135974;135975;135976 136773;136774;136775;136776;136777;136778;136779;136780;136781;136782 136774 10 NIIHGSDSVKSAEK KPGTIRGDFCIQVGRNIIHGSDSVKSAEKE RNIIHGSDSVKSAEKEISLWFKPEELVDYK R N I E K E 1 0 1 1 0 0 1 1 1 2 0 2 0 0 0 3 0 0 0 1 0 0 14 1 1483.7631 Q32Q12;P22392;O60361 Q32Q12 255 268 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 3 0.038399 17.744 By matching By MS/MS 1 1 1.1871 1.1278 0.37535 2 Median 1.1016 1.1248 NaN 1 0 Median 1.2793 1.1308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 884870 342970 541900 168490 70511 97983 716370 272450 443920 0 0 0 0 0 0 0 0 0 0 0 0 25570 3008 26930 135977;135978 136783 136783 1 NIIIALIDR FLRACAELHQNVNVKNIIIALIDRLALFAH QNVNVKNIIIALIDRLALFAHREDGPGIPA K N I D R L 1 1 1 1 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1039.639 Q96QK1 Q96QK1 297 305 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.015183 43.808 By MS/MS By matching By matching 1 3 1 1.2812 1.1077 11.668 5 Median 1.11 1.0847 NaN 1 0 Median 1.2812 1.1077 12.563 3 0 Median 1.2838 1.3239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19787000 8805600 10981000 2833000 1283700 1549200 16459000 7241200 9217300 495180 280610 214570 0 0 0 0 0 0 0 0 0 25571 3722 26931 135979;135980;135981;135982;135983 136784;136785 136785 2 NIILEEGK KRKKAVLFCLSEDKKNIILEEGKEILVGDV CLSEDKKNIILEEGKEILVGDVGQTVDDPY K N I G K E 0 0 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 914.5073 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;E9PS23 P23528 46 53 CFL1 Cofilin-1 yes no 2 0.0035841 87.323 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.0003 0.92461 14.564 4 Median 1.0977 1.0313 NaN 1 0 Median 1.174 0.9997 NaN 1 0 Median 0.91148 0.85516 NaN 1 0 Median 0.90935 0.75369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 156470000 74281000 82188000 43297000 19910000 23387000 52897000 24009000 28888000 55408000 27698000 27709000 4866900 2663200 2203800 0 0 0 0 0 0 25572 2118 26932 135984;135985;135986;135987 136786;136787;136788;136789;136790 136788 5 NIILGGVK VLVSGLRGLGVEIAKNIILGGVKAVTLHDQ LGVEIAKNIILGGVKAVTLHDQGTAQWADL K N I V K A 0 0 1 0 0 0 0 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 812.51199 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 90 97 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0094539 60.788 By MS/MS By MS/MS By MS/MS By MS/MS 6 6 2 1 1.4191 1.2298 17.063 15 Median 1.095 1.0563 20.931 6 0 Median 1.4935 1.2838 11.131 6 0 Median 1.2248 1.3364 23.236 2 0 Median 1.2148 1.0316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187330000 80192000 107140000 69223000 33048000 36175000 108890000 43378000 65511000 7142000 2993700 4148300 2079300 772300 1307000 0 0 0 0 0 0 25573 2100 26933 135988;135989;135990;135991;135992;135993;135994;135995;135996;135997;135998;135999;136000;136001;136002 136791;136792;136793;136794;136795;136796;136797;136798;136799;136800;136801;136802;136803;136804;136805 136801 15 NIILTTMPAGTK IIKGNLGANLSGLGRNIILTTMPAGTKLIA LGRNIILTTMPAGTKLIAGNKPVSFLTAQQ R N I T K L 1 0 1 0 0 0 0 1 0 2 1 1 1 0 1 0 3 0 0 0 0 0 12 0 1258.6955 Q6P4R8 Q6P4R8 1220 1231 NFRKB Nuclear factor related to kappa-B-binding protein yes yes 2 0.0019828 78.655 By MS/MS 1 0.78714 0.85113 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78714 0.85113 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2709700 1389100 1320600 0 0 0 0 0 0 2709700 1389100 1320600 0 0 0 0 0 0 0 0 0 25574 3159 26934 136003 136806 136806 1 NIINEEDADTMR KYLCECQFDDNLKFKNIINEEDADTMRLQP KFKNIINEEDADTMRLQPIGRDKDGLMYWY K N I M R L 1 1 2 2 0 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1419.63 Q96T23;H0YER1;H7C306 Q96T23 139 150 RSF1 Remodeling and spacing factor 1 yes no 2 4.3735E-05 147.95 By MS/MS By MS/MS 4 1 0.80371 0.8153 51.708 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85875 0.87255 38.15 4 0 Median 0.43487 0.35375 NaN 1 0 Median 56441000 29685000 26756000 0 0 0 0 0 0 0 0 0 0 0 0 54314000 28298000 26016000 2126400 1387100 739350 25575 3740 26935;26936 136004;136005;136006;136007;136008 136807;136808;136809;136810;136811 136810 1817 5 NIIQQAIDAGEVPSYNAFVK ESVLCVQYTEEPRIRNIIQQAIDAGEVPSY AIDAGEVPSYNAFVKESKQKMNARKRRAQE R N I V K E 3 0 2 1 0 2 1 1 0 3 0 1 0 1 1 1 0 0 1 2 0 0 20 0 2176.1164 Q8WXX5 Q8WXX5 161 180 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 0.014313 20.663 By matching By MS/MS 1 2 0.81376 0.78269 3.694 3 Median NaN NaN NaN 0 0 Median 0.97027 0.82386 NaN 1 0 Median 0.80684 0.77473 1.4452 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13984000 7245200 6738700 0 0 0 402170 191940 210230 13582000 7053300 6528500 0 0 0 0 0 0 0 0 0 25576 3522 26937 136009;136010;136011 136812;136813;136814 136814 3 NIIRPQLK GKKAKSETFRLLHAKNIIRPQLKFREKIDN FRLLHAKNIIRPQLKFREKIDNSNTPFLPK K N I L K F 0 1 1 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 8 1 980.6131 Q01780 Q01780 179 186 EXOSC10 Exosome component 10 yes yes 2 0.045072 60.648 By matching By MS/MS By MS/MS 3 1 1 1.0597 1.0184 14.753 5 Median NaN NaN NaN 0 0 Median 1.0497 1.2563 17.899 3 0 Plateau 1.0712 1.2191 NaN 1 0 Median 1.0597 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7020300 3417400 3602900 0 0 0 4148900 1854100 2294900 1793400 963080 830350 1077900 600220 477690 0 0 0 0 0 0 25577 2691 26938 136012;136013;136014;136015;136016 136815;136816 136815 2 NIISLLNVFTPQK RAYRELVLLKCVNHKNIISLLNVFTPQKTL HKNIISLLNVFTPQKTLEEFQDVYLVMELM K N I Q K T 0 0 2 0 0 1 0 0 0 2 2 1 0 1 1 1 1 0 0 1 0 0 13 0 1485.8555 P45984;E5RJ57;A0A286YFD7;D6RJF9;A0A286YEQ7;A0A286YEX7;A0A286YFC0;A0A1P0B7D2;A0A286YFJ6;A0A286YFK3;A0A286YFJ4;A0A286YES9;A0A286YEN5;A0A286YF85;A0A286YF97;A0A286YFA6;A0A286YF62;A0A286YEQ0;A0A286YFI3;A0A286YF19;A0A286YF35;A0A286YEY0;A0A1W2PRF2;A0A286YFE2;D7R525;D6RCB1;A0A286YF83;A0A286YF02;J3KNK1;D6R9C1;A0A286YEV3;A0A286YES0;A0A286YFN2;A0A286YFB6;A0A286YFM6;A0A286YEW9;P53779 P45984 84 96 MAPK9;MAPK10 Mitogen-activated protein kinase 9;Mitogen-activated protein kinase 10 yes no 2 0.032645 26.598 By MS/MS 2 0.84773 0.83191 0.50777 2 Median 0.84773 0.83191 0.50777 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2047900 999200 1048700 2047900 999200 1048700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25578 2333 26939 136017;136018 136817;136818 136817 2 NIISPPWDFR LKCYDFDVHTMKTLKNIISPPWDFREFEVE MKTLKNIISPPWDFREFEVEKQTAEETGLT K N I F R E 0 1 1 1 0 0 0 0 0 2 0 0 0 1 2 1 0 1 0 0 0 0 10 0 1243.635 Q13042;Q5T8C6 Q13042 557 566 CDC16 Cell division cycle protein 16 homolog yes no 2 0.061346 26.384 By MS/MS By matching 1 1 0.72552 0.6908 8.1548 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61721 0.6521 NaN 1 0 Median 0.85284 0.73181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1876800 1192400 684360 0 0 0 0 0 0 1628500 1055900 572640 248260 136540 111720 0 0 0 0 0 0 25579 2779 26940 136019;136020 136819 136819 1 NIITNLSK NFFKDWRKEMTNEEKNIITNLSKCDFTQMS EMTNEEKNIITNLSKCDFTQMSQYFKAQTE K N I S K C 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 8 0 901.52328 P11387 P11387 292 299 TOP1 DNA topoisomerase 1 yes yes 2 0.0034493 95.531 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 2 1.2731 1.0874 27.233 8 Median NaN NaN NaN 0 0 Median 1.1684 1.0327 NaN 1 0 Median 1.0173 1.088 NaN 1 0 Median 1.446 1.2298 38.404 3 1 Median 1.0591 1.0868 NaN 1 0 Median 1.2731 1.0451 3.7967 2 0 Median 132080000 63473000 68606000 0 0 0 2175500 1055200 1120300 68146000 37422000 30724000 41898000 15461000 26438000 7567900 3536800 4031100 12291000 5998000 6292900 25580 1962 26941 136021;136022;136023;136024;136025;136026;136027;136028 136820;136821;136822;136823;136824;136825;136826;136827 136820 8 NIIVFYGSQTGTAEEFANR VRESSFVEKMKKTGRNIIVFYGSQTGTAEE FYGSQTGTAEEFANRLSKDAHRYGMRGMSA R N I N R L 2 1 2 0 0 1 2 2 0 2 0 0 0 2 0 1 2 0 1 1 0 0 19 0 2116.0225 P16435;H0Y4R2;C9JU80 P16435 79 97 POR NADPH--cytochrome P450 reductase yes no 2 4.8678E-08 81.494 By MS/MS 1 1.2314 1.2043 NaN 1 Median 1.2314 1.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2772600 1374100 1398600 2772600 1374100 1398600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25581 2030 26942 136029 136828;136829 136828 2 NIIVQFGVR QEVGYGFCASIEECRNIIVQFGVREVTAAQ SIEECRNIIVQFGVREVTAAQVARVLGMMA R N I V R E 0 1 1 0 0 1 0 1 0 2 0 0 0 1 0 0 0 0 0 2 0 0 9 0 1044.608 A5YKK6 A5YKK6 275 283 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.031814 35.88 By matching By MS/MS By matching 1 1 1 1.0923 0.9402 16.871 3 Median 1.0923 1.0708 NaN 1 0 Median 1.128 0.9402 NaN 1 0 Median 0.68953 0.76627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757900 2887700 2870200 3222800 1726700 1496100 1232600 520150 712450 1302500 640840 661650 0 0 0 0 0 0 0 0 0 25582 503 26943 136030;136031;136032 136830;136831 136831 2 NIKPLLSTFSQVPGSENEK RTRFTKSTREALNNKNIKPLLSTFSQVPGS LLSTFSQVPGSENEKKCTLDQAFRGILEEE K N I E K K 0 0 2 0 0 1 2 1 0 1 2 2 0 1 2 3 1 0 0 1 0 0 19 1 2087.0899 A0A087WWS1;Q96FV9;A0A087WY84;J3KT14;J3KRD7;J3QQZ3 A0A087WWS1 29 47 THOC1 THO complex subunit 1 yes no 3 1.1474E-10 77.795 By MS/MS 2 0.74735 0.82918 10.439 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74735 0.82918 10.439 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32528000 18257000 14271000 0 0 0 0 0 0 32528000 18257000 14271000 0 0 0 0 0 0 0 0 0 25583 62 26944 136033;136034 136832;136833 136832 2 NIKPLLSTFSQVPGSENEKK RTRFTKSTREALNNKNIKPLLSTFSQVPGS LSTFSQVPGSENEKKCTLDQAFRGILEEEI K N I K K C 0 0 2 0 0 1 2 1 0 1 2 3 0 1 2 3 1 0 0 1 0 0 20 2 2215.1848 A0A087WWS1;Q96FV9;A0A087WY84;J3KT14;J3KRD7;J3QQZ3 A0A087WWS1 29 48 THOC1 THO complex subunit 1 yes no 3 1.8113E-07 56.719 By MS/MS 1 0.7539 0.8716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7539 0.8716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23422000 11445000 11977000 0 0 0 0 0 0 23422000 11445000 11977000 0 0 0 0 0 0 0 0 0 25584 62 26945 136035 136834 136834 1 NILAFRDQNILLGTTYR VSLLDENNVSSYLSKNILAFRDQNILLGTT LAFRDQNILLGTTYRIIANALSSEPACLAE K N I Y R I 1 2 2 1 0 1 0 1 0 2 3 0 0 1 0 0 2 0 1 0 0 0 17 1 2007.0902 P78527 P78527 3319 3335 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.3642E-08 97.502 By MS/MS By MS/MS 2 1 1.0141 1.0845 15.687 3 Median 0.98265 1.0593 3.3194 2 0 Median NaN NaN NaN 0 0 Median 1.2609 1.3858 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15352000 7778500 7573400 13107000 6851500 6255100 0 0 0 2245300 926940 1318300 0 0 0 0 0 0 0 0 0 25585 2647 26946 136036;136037;136038 136835;136836;136837 136836 3 NILASNPR RENPPVKPDFSKLQRNILASNPRVTRFHIN DFSKLQRNILASNPRVTRFHINWEDNTEKL R N I P R V 1 1 2 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 8 0 883.48756 Q9NVP2;K7ES22;Q9Y294 Q9Y294 138 145 ASF1B;ASF1A Histone chaperone ASF1B;Histone chaperone ASF1A no no 2 0.028622 40.268 By MS/MS 1 1.0252 0.85204 NaN 1 Median NaN NaN NaN 0 0 Median 1.0252 0.85204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1410600 674770 735800 0 0 0 1410600 674770 735800 0 0 0 0 0 0 0 0 0 0 0 0 25586 4138;4381 26947 136039 136838 136838 1 NILDDFR SPSVVLASYNHDGTRNILDDFREAYFWLRQ SYNHDGTRNILDDFREAYFWLRQNTDEHAR R N I F R E 0 1 1 2 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 891.44503 Q8TCJ2 Q8TCJ2 579 585 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 0.026814 52.636 By MS/MS By matching By MS/MS By matching 2 3 2 3 1.304 1.2199 14.218 10 Median 1.2566 1.2554 13.215 2 0 Median 1.2924 1.0791 7.1031 3 0 Median 1.2205 1.3411 12.448 2 0 Median 1.6147 1.3985 21.891 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9721800 4150100 5571700 1961700 715090 1246600 2535500 1118200 1417300 4919600 2175700 2743900 304960 141080 163880 0 0 0 0 0 0 25587 3466 26948 136040;136041;136042;136043;136044;136045;136046;136047;136048;136049 136839;136840;136841 136840 3 NILDFPQHVSPSK LKALADVEVTYTVQRNILDFPQHVSPSKDI QRNILDFPQHVSPSKDIRTASTEADKKLSE R N I S K D 0 0 1 1 0 1 0 0 1 1 1 1 0 1 2 2 0 0 0 1 0 0 13 0 1480.7674 P52888;K7EKB6 P52888 80 92 THOP1 Thimet oligopeptidase yes no 2;3 0.00032739 88.187 By MS/MS By matching 2 1 0.74587 0.6945 7.0983 3 Median 0.74726 0.68984 0.9518 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73522 0.77965 NaN 1 0 Median NaN NaN NaN 0 0 Median 16547000 9437000 7110000 14231000 8487200 5743900 0 0 0 0 0 0 0 0 0 2315900 949800 1366100 0 0 0 25588 2460 26949 136050;136051;136052 136842;136843 136843 2 NILDSKPTANK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VVKKNILDSKPTANKKCDLISIPKKTTDTA K N I N K K 1 0 2 1 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1199.651 Q9ULV4;B4E3S0;H0YHL7 Q9ULV4 408 418 CORO1C Coronin-1C;Coronin yes no 2;3 0.023729 46.891 By matching By MS/MS By MS/MS 2 2 4 0.98851 0.95948 23.76 8 Median NaN NaN NaN 0 0 Median 1.0337 0.9751 6.2804 2 0 Median 0.82243 0.86579 12.28 2 0 Median 1.046 1.0386 29.196 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12002000 6262700 5739200 0 0 0 1276900 657230 619690 6304400 3451900 2852500 4420600 2153600 2267000 0 0 0 0 0 0 25589 4329 26950 136053;136054;136055;136056;136057;136058;136059;136060 136844;136845;136846;136847 136846 4 NILDSKPTANKK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VKKNILDSKPTANKKCDLISIPKKTTDTAS K N I K K C 1 0 2 1 0 0 0 0 0 1 1 3 0 0 1 1 1 0 0 0 0 0 12 2 1327.746 Q9ULV4;B4E3S0;H0YHL7 Q9ULV4 408 419 CORO1C Coronin-1C;Coronin yes no 3 0.030791 22.142 By matching By MS/MS By matching 2 1 1 0.87224 0.92325 10.034 4 Median 0.78679 0.84335 1.4661 2 0 Median 1.0619 1.0052 NaN 1 0 Median 0.86844 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2245700 1105600 1140100 688420 343800 344620 1430700 683190 747510 126530 78563 47971 0 0 0 0 0 0 0 0 0 25590 4329 26951 136061;136062;136063;136064 136848;136849 136849 2 NILFVITKPDVYK RQVTGVTRVTIRKSKNILFVITKPDVYKSP SKNILFVITKPDVYKSPASDTYIVFGEAKI K N I Y K S 0 0 1 1 0 0 0 0 0 2 1 2 0 1 1 0 1 0 1 2 0 0 13 1 1548.8916 F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3;F8W1N5;F8VNW4;F8VZ58;Q9BZK3 F8VZJ2 22 34 NACA;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 2;3 4.6087E-06 113.47 By MS/MS By matching By MS/MS By matching 4 2 2 1 0.98284 0.97408 13.884 9 Median 1.0264 0.98973 16.58 4 0 Median 0.90298 0.81271 6.248 2 0 Median 0.95678 0.99934 3.6216 2 0 Median 1.033 0.90707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 260700000 127300000 133400000 181400000 85419000 95978000 55327000 30085000 25242000 23518000 11557000 11961000 461320 240420 220900 0 0 0 0 0 0 25591 907 26952 136065;136066;136067;136068;136069;136070;136071;136072;136073 136850;136851;136852;136853;136854;136855;136856;136857 136850 8 NILGGTVFR FKLKKMWKSPNGTIRNILGGTVFREPIICK PNGTIRNILGGTVFREPIICKNIPRLVPGW R N I F R E 0 1 1 0 0 0 0 2 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 975.55016 O75874;C9J4N6;P48735 P48735 141 149 IDH1;IDH2 Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial no no 2 0.0061228 55.531 By MS/MS By matching By MS/MS 2 2 1 1.0348 1.0265 25.179 5 Median 1.0016 0.97291 7.5884 2 0 Median 1.6745 1.4423 2.6744 2 0 Median 0.84081 0.84371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27876000 13683000 14192000 19500000 9916900 9583100 3284900 1187700 2097200 5090700 2578900 2511800 0 0 0 0 0 0 0 0 0 25592 2367;1701 26953 136074;136075;136076;136077;136078 136858;136859;136860;136861;136862;136863 136858 6 NILHESEIDKR QVSPRGINAIFERLRNILHESEIDKRVQYM ERLRNILHESEIDKRVQYMIEVMFAVRKDG R N I K R V 0 1 1 1 0 0 2 0 1 2 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1352.7048 B7WP74;Q9HCG8 B7WP74 321 331 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes no 3 8.9919E-05 70.942 By MS/MS By MS/MS 1 1 1.2777 1.2533 27.061 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3743 1.5176 NaN 1 0 Median 1.1879 1.035 NaN 1 0 Median 4763600 2106400 2657200 0 0 0 0 0 0 0 0 0 0 0 0 3059100 1309300 1749700 1704500 797030 907500 25593 627 26954 136079;136080 136864;136865;136866;136867 136867 4 NILHQGQEAILQR RSLRDLTPEHLPLLRNILHQGQEAILQRYR LRNILHQGQEAILQRYRMKGDHLRVYLHYL R N I Q R Y 1 1 1 0 0 3 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1518.8267 Q96C86;A0A3B3ITF0 Q96C86 243 255 DCPS m7GpppX diphosphatase yes no 2;3 0.00010725 141.95 By MS/MS By matching 2 1 1.0276 1.0661 2.8225 3 Median 1.0435 1.0421 3.2226 2 0 Median NaN NaN NaN 0 0 Median 1.0276 1.0726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36241000 18464000 17777000 35366000 17991000 17375000 0 0 0 875170 473180 401990 0 0 0 0 0 0 0 0 0 25594 3616 26955 136081;136082;136083 136868;136869;136870;136871;136872 136869 5 NILIDFTK YEKMISGMYLGEIVRNILIDFTKKGFLFRG YLGEIVRNILIDFTKKGFLFRGQISETLKT R N I T K K 0 0 1 1 0 0 0 0 0 2 1 1 0 1 0 0 1 0 0 0 0 0 8 0 962.54368 P19367;E9PB90;P52789 P19367 756 763 HK1;HK2 Hexokinase-1;Hexokinase;Hexokinase-2 no no 2 0.02469 43.218 By MS/MS By matching By matching By matching 3 2 1 1 1.2117 1.1761 7.342 7 Median 1.1692 1.1396 2.2345 3 0 Median 1.3682 1.1763 0.025462 2 0 Median 1.2117 1.2755 NaN 1 0 Median 1.5499 1.3788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11002000 5002900 5998900 6297600 2940600 3357000 2840700 1206100 1634600 1682000 788760 893200 181530 67537 114000 0 0 0 0 0 0 25595 2064;908 26956 136084;136085;136086;136087;136088;136089;136090 136873;136874 136874 2 NILIDFTKK YEKMISGMYLGEIVRNILIDFTKKGFLFRG LGEIVRNILIDFTKKGFLFRGQISETLKTR R N I K K G 0 0 1 1 0 0 0 0 0 2 1 2 0 1 0 0 1 0 0 0 0 0 9 1 1090.6386 P19367 P19367 756 764 HK1 Hexokinase-1 yes yes 2 0.0042915 67.993 By MS/MS By matching By matching 1 1 1 1.505 1.3047 31.941 3 Median 1.1155 1.1681 NaN 1 0 Median 1.505 1.3047 NaN 1 0 Median 1.8624 2.1288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15094000 6321400 8772900 11815000 5166000 6648500 2146600 785270 1361400 1133200 370150 763050 0 0 0 0 0 0 0 0 0 25596 2064 26957 136091;136092;136093 136875;136876 136875 2 NILITTNMVSSQNTANEANPLKR AVQNVLINPSMIGPKNILITTNMVSSQNTA VSSQNTANEANPLKRKHEDDDDNDIM____ K N I K R K 2 1 5 0 0 1 1 0 0 2 2 1 1 0 1 2 3 0 0 1 0 0 23 1 2528.3017 Q9HBM6 Q9HBM6 218 240 TAF9B Transcription initiation factor TFIID subunit 9B yes yes 3 0.064445 15.699 By MS/MS By matching By matching 1 1 1 1.3585 1.2821 11.718 3 Median 1.508 1.4953 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0859 1.188 NaN 1 0 Median 1.3585 1.2821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4679500 2238900 2440700 2194400 875760 1318600 0 0 0 2340900 1310700 1030300 144200 52453 91746 0 0 0 0 0 0 25597 4022 26958 136094;136095;136096 136877 136877 0 NILIVLTK ASVHCLETGEYTHIRNILIVLTKILPWYPK GEYTHIRNILIVLTKILPWYPKVLNLGQAL R N I T K I 0 0 1 0 0 0 0 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 8 0 912.6008 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1122 1129 THOC2 THO complex subunit 2 yes no 2 0.025931 42.287 By matching By matching By MS/MS By matching By matching 1 2 3 2 1 1.1607 1.043 12.344 9 Median 1.2869 1.28 NaN 1 0 Median 1.3794 1.2261 0.13486 2 0 Median 0.943 1.0509 7.1956 3 0 Plateau 1.1751 1.0374 0.75957 2 0 Median NaN NaN NaN 0 0 Median 1.0436 0.91399 NaN 1 0 Median 8705400 4056000 4649500 1066600 447940 618610 733640 316480 417160 6335300 3024900 3310400 481070 222200 258870 0 0 0 88836 44395 44441 25598 3448 26959 136097;136098;136099;136100;136101;136102;136103;136104;136105 136878;136879 136879 2 NILLTIGSYK YLKAMLSTGFKIPKKNILLTIGSYKNKSEL KIPKKNILLTIGSYKNKSELLPTVRLLESL K N I Y K N 0 0 1 0 0 0 0 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1120.6492 F8VPD4;P27708 F8VPD4 1251 1260 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0013144 66.621 By MS/MS By matching 2 2 1.1619 1.0659 17.607 4 Median 1.302 1.2692 22.874 2 0 Median 1.1619 1.0383 1.9018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6927200 2513000 4414200 5499400 1824400 3675000 1427800 688580 739240 0 0 0 0 0 0 0 0 0 0 0 0 25599 1057 26960 136106;136107;136108;136109 136880;136881 136880 2 NILLTNEQLESAR FIGRANHFFTVTDPRNILLTNEQLESARKI PRNILLTNEQLESARKIVHDYRQGIVPPGL R N I A R K 1 1 2 0 0 1 2 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1499.7944 Q9H9B4;D6RFI0;D6RDG7;S4R2X2;D6RAE9 Q9H9B4 36 48 SFXN1 Sideroflexin-1 yes no 2 1.9634E-15 188.28 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2125 1.0883 12.651 4 Median 1.0408 0.97133 NaN 1 0 Median 1.4126 1.1746 NaN 1 0 Median 1.0245 1.0083 NaN 1 0 Median 1.5139 1.27 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108910000 50203000 58706000 77242000 36096000 41146000 23793000 9757000 14036000 7158400 4098800 3059600 715130 250910 464220 0 0 0 0 0 0 25600 3998 26961 136110;136111;136112;136113 136882;136883;136884;136885;136886;136887 136883 6 NILLTNEQLESARK FIGRANHFFTVTDPRNILLTNEQLESARKI RNILLTNEQLESARKIVHDYRQGIVPPGLT R N I R K I 1 1 2 0 0 1 2 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 1 1627.8893 Q9H9B4;D6RFI0;D6RDG7;S4R2X2;D6RAE9 Q9H9B4 36 49 SFXN1 Sideroflexin-1 yes no 2;3 4.6162E-07 115.18 By MS/MS By matching 2 2 1.2536 1.194 16.261 4 Median 1.0482 1.0535 6.6469 2 0 Median 1.503 1.3679 8.1699 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31982000 13966000 18016000 27060000 12182000 14877000 4922100 1783200 3138800 0 0 0 0 0 0 0 0 0 0 0 0 25601 3998 26962 136114;136115;136116;136117 136888;136889;136890 136888 3 NILMFTGETEATK KKLLEQRAQYVEKTKNILMFTGETEATKEK TKNILMFTGETEATKEKKRGGGGGRRSKKG K N I T K E 1 0 1 0 0 0 2 1 0 1 1 1 1 1 0 0 3 0 0 0 0 0 13 0 1453.7123 Q6PD62 Q6PD62 887 899 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 3.8991E-05 90.685 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.93527 0.97637 36.701 5 Median 0.73148 0.83144 NaN 1 0 Median 0.93527 0.80296 NaN 1 0 Median 0.90476 0.97637 NaN 1 0 Median 1.323 1.1092 NaN 1 0 Median 1.7804 1.987 NaN 1 0 Median NaN NaN NaN 0 0 Median 10020000 4967300 5052900 1328100 611730 716420 1270600 615540 655070 6009600 3104800 2904800 1138300 522800 615540 273470 112430 161030 0 0 0 25602 3168 26963 136118;136119;136120;136121;136122 136891 136891 1 NILMYGPPGTGK AIATRNTKKNRSLYRNILMYGPPGTGKTLF LYRNILMYGPPGTGKTLFAKKLALHSGMDY R N I G K T 0 0 1 0 0 0 0 3 0 1 1 1 1 0 2 0 1 0 1 0 0 0 12 0 1246.638 H0Y2W2;Q9NVI7 H0Y2W2 333 344 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 0.00034761 81.338 By MS/MS By matching 1 1 0.88699 0.78363 12.548 2 Median 0.76715 0.71709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0256 0.85634 NaN 1 0 Median 21125000 11802000 9322700 19065000 10800000 8265100 0 0 0 0 0 0 0 0 0 0 0 0 2059900 1002300 1057600 25603 1140;4133 26964 136123;136124 136892 136892 1 NILNELFQR PGMVTHIKAPEQQVKNILNELFQRENRVLH PEQQVKNILNELFQRENRVLHYWTMRKRRL K N I Q R E 0 1 2 0 0 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1145.6193 E7EWP2;O75962;F5H228;E7EPJ7 E7EWP2 1052 1060 TRIO Triple functional domain protein yes no 2 0.06063 28.174 By MS/MS By matching By matching By matching 2 2 2 1 0.97144 0.97448 19.559 7 Median 0.96774 0.9718 0.39024 2 0 Median 1.0955 0.95779 16.841 2 0 Median 0.84682 0.94769 11.025 2 0 Median NaN NaN NaN 0 0 Median 1.5314 1.5326 NaN 1 0 Median NaN NaN NaN 0 0 Median 4694400 2257700 2436700 2613600 1296400 1317100 705200 294500 410700 1162900 565390 597470 0 0 0 212730 101350 111390 0 0 0 25604 903 26965 136125;136126;136127;136128;136129;136130;136131 136893 136893 1 NILPSASTEQSGDLKPSPADPGSVR EEAGKQPETSEDLGKNILPSASTEQSGDLK SGDLKPSPADPGSVREDSGFICWKKGCNQV K N I V R E 2 1 1 2 0 1 1 2 0 1 2 1 0 0 4 5 1 0 0 1 0 0 25 1 2522.2613 Q15911 Q15911 1331 1355 ZFHX3 Zinc finger homeobox protein 3 yes yes 3 3.6899E-08 40.669 By MS/MS 1 0.34028 0.39415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34028 0.39415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6694200 4819800 1874400 0 0 0 0 0 0 6694200 4819800 1874400 0 0 0 0 0 0 0 0 0 25605 2977 26966 136132 136894 136894 1 NILQLHDLTTGALLK VRSNFLVLCYLHDVKNILQLHDLTTGALLK NILQLHDLTTGALLKTFPLDVGSIVGYSGQ K N I L K T 1 0 1 1 0 1 0 1 1 1 5 1 0 0 0 0 2 0 0 0 0 0 15 0 1648.9512 A0A499FJL1;P48147 A0A499FJL1 293 307 PREP Prolyl endopeptidase yes no 2;3 0.0003753 61.344 By MS/MS By MS/MS 2 9 0.9902 0.85782 25.058 10 Median 0.87313 0.8542 0.55158 2 0 Median 1.0491 0.89793 28.227 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45814000 19900000 25914000 4994100 2445800 2548300 40820000 17454000 23365000 0 0 0 0 0 0 0 0 0 0 0 0 25606 478 26967 136133;136134;136135;136136;136137;136138;136139;136140;136141;136142;136143 136895;136896;136897;136898;136899;136900 136898 6 NILSSADYVER TEVEMQGEMINRIEKNILSSADYVERGQEH RIEKNILSSADYVERGQEHVKTALENQKKA K N I E R G 1 1 1 1 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 1 0 0 11 0 1265.6252 Q12846 Q12846 244 254 STX4 Syntaxin-4 yes yes 2 0.00015911 114.5 By MS/MS By MS/MS By matching 1 1 1 1.0987 1.0283 172.01 3 Median 1.0987 1.0283 NaN 1 0 Median 1.4147 1.1798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.063397 0.056119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18760000 9523500 9236200 12015000 5561900 6453100 4704600 2025600 2679100 0 0 0 2040100 1936100 104000 0 0 0 0 0 0 25607 2764 26968 136144;136145;136146 136901;136902;136903 136902 3 NILSVVGTDALK TLFGEGPAERRERLRNILSVVGTDALKKTK RLRNILSVVGTDALKKTKKDDEKSKKSKEE R N I L K K 1 0 1 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1228.7027 O43172 O43172 135 146 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.00058963 73.067 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1.1056 1.008 14.092 6 Median NaN NaN NaN 0 0 Median 1.1354 0.98744 15.159 2 0 Median 0.96284 0.93556 NaN 1 0 Median 1.242 1.086 NaN 1 0 Median 1.221 1.1812 NaN 1 0 Median 0.96433 0.82451 NaN 1 0 Median 16400000 7885800 8514500 0 0 0 3473700 1539500 1934200 11702000 5779200 5923300 467660 183910 283740 484180 245190 238980 272380 138090 134290 25608 1557 26969 136147;136148;136149;136150;136151;136152 136904;136905 136905 2 NILSVVGTDALKK TLFGEGPAERRERLRNILSVVGTDALKKTK LRNILSVVGTDALKKTKKDDEKSKKSKEEY R N I K K T 1 0 1 1 0 0 0 1 0 1 2 2 0 0 0 1 1 0 0 2 0 0 13 1 1356.7977 O43172 O43172 135 147 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2;3 5.5419E-05 90.685 By matching By MS/MS By MS/MS By matching By matching 2 3 3 2 2 1.1036 1.1074 47.847 12 Median 1.1036 1.0528 10.722 2 0 Median NaN NaN NaN 0 0 Median 0.9814 1.0231 87.181 3 0 Median 0.92735 0.92695 34.659 3 0 Median 1.4709 1.5699 52.93 2 0 Median 1.3991 1.2218 7.4594 2 0 Median 46056000 21063000 24993000 3438700 1520100 1918600 0 0 0 36711000 16751000 19961000 2168200 1025700 1142500 2911400 1410000 1501400 826340 356910 469440 25609 1557 26970 136153;136154;136155;136156;136157;136158;136159;136160;136161;136162;136163;136164 136906;136907;136908;136909;136910;136911 136907 6 NILTEIYR ETSALDSTNVEEAFKNILTEIYRIVSQKQI NVEEAFKNILTEIYRIVSQKQIADRAAHDE K N I Y R I 0 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 8 0 1020.5604 Q15907 Q15907 167 174 RAB11B Ras-related protein Rab-11B yes yes 2 0.0074447 67.032 By MS/MS By MS/MS By matching By matching By matching 2 1 2 2 1 1.1642 1.141 20.605 8 Median 0.81668 0.79 30.776 2 0 Median NaN NaN NaN 0 0 Median 1.2004 1.148 NaN 1 0 Median 1.3372 1.1482 1.3636 2 0 Median 1.0947 1.0958 8.6092 2 0 Median 1.2987 1.1448 NaN 1 0 Median 37945000 18664000 19281000 30889000 15609000 15280000 0 0 0 4086500 1797100 2289400 1545800 630810 914980 1263600 548470 715110 160100 78332 81769 25610 2976 26971 136165;136166;136167;136168;136169;136170;136171;136172 136912;136913;136914;136915 136913 4 NILVFGEDGSGK SEVSTRARSKLPSGKNILVFGEDGSGKTTL SGKNILVFGEDGSGKTTLMTKLQGAEHGKK K N I G K T 0 0 1 1 0 0 1 3 0 1 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1234.6194 O43237;H3BUM4 O43237 56 67 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 2 5.4737E-06 98.943 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.95226 0.84289 21.062 5 Median NaN NaN NaN 0 0 Median 0.95226 0.84289 NaN 1 0 Median 1.1276 1.1157 NaN 1 0 Median 0.98619 0.88064 31.206 2 0 Median NaN NaN NaN 0 0 Median 0.87249 0.75787 NaN 1 0 Median 9234300 4375900 4858400 0 0 0 631070 337470 293600 7141900 3390000 3751900 1307700 551580 756120 0 0 0 153570 96781 56792 25611 1559 26972 136173;136174;136175;136176;136177 136916;136917;136918 136916 3 NIMLEQDIAGR QVPLNSTALQDIISKNIMLEQDIAGRQSSI IISKNIMLEQDIAGRQSSINAMNEKVKKFM K N I G R Q 1 1 1 1 0 1 1 1 0 2 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1258.634 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7 E9PHM6 2114 2124 DST Dystonin yes no 2 0.0072486 61.65 By MS/MS 1 0.66479 0.70277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66479 0.70277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8637800 5675500 2962300 0 0 0 0 0 0 8637800 5675500 2962300 0 0 0 0 0 0 0 0 0 25612 934 26973 136178 136919 136919 1 NIMTQNVER NDRVRNLQSEVEGVKNIMTQNVERILARGE EVEGVKNIMTQNVERILARGENLEHLRNKT K N I E R I 0 1 2 0 0 1 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 9 0 1103.5393 Q9BV40;B8ZZT4 Q9BV40 25 33 VAMP8 Vesicle-associated membrane protein 8 yes no 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS 2 2 1 1.5595 1.3797 20.21 5 Median 1.3219 1.2825 19.144 2 0 Median 1.587 1.3489 3.1876 2 0 Median 1.9183 1.9473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75166000 30955000 44211000 20727000 9612500 11115000 52927000 20820000 32106000 1511800 521580 990260 0 0 0 0 0 0 0 0 0 25613 3845 26974;26975 136179;136180;136181;136182;136183 136920;136921;136922;136923;136924;136925 136923 1839 6 NINADEAAAMGAVYQAAALSK QEVLLKAVGKEELGKNINADEAAAMGAVYQ AAAMGAVYQAAALSKAFKVKPFVVRDAVVY K N I S K A 8 0 2 1 0 1 1 1 0 1 1 1 1 0 0 1 0 0 1 1 0 0 21 0 2078.0103 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 408 428 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.041393 19.578 By MS/MS By matching 1 1 1.1585 1.0992 4.1939 2 Median 1.0816 1.0671 NaN 1 0 Median 1.2408 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3698300 1635300 2063000 3480600 1558900 1921700 217740 76387 141360 0 0 0 0 0 0 0 0 0 0 0 0 25614 101 26976 136184;136185 136926 136926 1 NINIGDISIK AVSAVKNMNLPEIPRNINIGDISIKVPNLP PEIPRNINIGDISIKVPNLPSFK_______ R N I I K V 0 0 2 1 0 0 0 1 0 4 0 1 0 0 0 1 0 0 0 0 0 0 10 0 1085.6081 Q92572 Q92572 176 185 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.012363 41.427 By MS/MS By MS/MS 1 1 1.7432 1.6509 66.829 2 Median 1.0892 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.7898 2.6482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12761000 5364900 7395900 8856700 4309100 4547600 0 0 0 3904200 1055800 2848400 0 0 0 0 0 0 0 0 0 25615 3537 26977 136186;136187 136927;136928 136927 2 NINLIVQK TLLSGEPEVQYVALRNINLIVQKRPEILKQ VQYVALRNINLIVQKRPEILKQEIKVFFVK R N I Q K R 0 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 940.57057 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 267 274 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.028842 40.103 By MS/MS By MS/MS 1 1 1.0981 0.91943 11.374 2 Median NaN NaN NaN 0 0 Median 1.1755 0.99643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0257 0.84837 NaN 1 0 Median 9693100 4304500 5388700 0 0 0 8303800 3704100 4599700 0 0 0 0 0 0 0 0 0 1389300 600380 788940 25616 128;2752 26978 136188;136189 136929;136930;136931 136929 3 NINSLQEELLQLK QLQNIIEANSQHYQKNINSLQEELLQLKAI QKNINSLQEELLQLKAIHQEEVKELMCQIE K N I L K A 0 0 2 0 0 2 2 0 0 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1540.8461 Q8IWJ2;B8ZZW2 Q8IWJ2 233 245 GCC2 GRIP and coiled-coil domain-containing protein 2 yes no 2 0.014426 50.123 By MS/MS 1 0.71561 0.67407 NaN 1 Median 0.71561 0.67407 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857000 1216200 640710 1857000 1216200 640710 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25617 3326 26979 136190 136932 136932 1 NINTFVETPVQK GKAMDTPKPAVSDEKNINTFVETPVQKLDL DEKNINTFVETPVQKLDLLGNLPGSKRQPQ K N I Q K L 0 0 2 0 0 1 1 0 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1388.73 P46013 P46013 2399 2410 MKI67 Antigen KI-67 yes yes 2 1.9391E-06 135.55 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 0.95817 0.93932 32.091 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90026 0.97576 5.9829 3 0 Median 0.9971 0.87369 49.858 4 0 Median 1.0956 1.1463 NaN 1 1 Median 0.96482 0.82682 NaN 1 0 Median 75205000 39128000 36078000 0 0 0 0 0 0 54035000 28138000 25897000 11992000 6357600 5634200 7375200 3642900 3732300 1803500 989010 814470 25618 2335 26980 136191;136192;136193;136194;136195;136196;136197;136198;136199 136933;136934;136935;136936;136937;136938;136939;136940;136941;136942 136937 10 NIPAGLQSMNQALQR LKKLVGSDQAPGRDKNIPAGLQSMNQALQR NIPAGLQSMNQALQRRFAKGVQYNMKIVIR K N I Q R R 2 1 2 0 0 3 0 1 0 1 2 0 1 0 1 1 0 0 0 0 0 0 15 0 1639.8464 Q3YEC7;F2Z2T0 Q3YEC7 20 34 RABL6 Rab-like protein 6 yes no 2 0.00011471 79.693 By MS/MS By matching 2 2 1.1112 0.95348 26.861 4 Median 0.8277 0.80353 43.264 2 1 Median 1.1112 0.95348 0.32616 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14615000 6858000 7756500 12968000 6093200 6875000 1646400 764860 881570 0 0 0 0 0 0 0 0 0 0 0 0 25619 3014 26981 136200;136201;136202;136203 136943;136944;136945 136944 3 NIPEDNADMAR VKTLHPAVHAGILARNIPEDNADMARLDFN ILARNIPEDNADMARLDFNLIRVVACNLYP R N I A R L 2 1 2 2 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 11 0 1244.5455 P31939;C9JLK0 P31939 80 90 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0052448 63.283 By MS/MS By MS/MS 1 1 0.84648 0.7693 8.0757 2 Median 0.85278 0.8145 NaN 1 0 Median 0.84022 0.7266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22935000 12870000 10065000 9294900 5156300 4138600 13640000 7713500 5926200 0 0 0 0 0 0 0 0 0 0 0 0 25620 2207 26982 136204;136205 136946;136947;136948;136949 136946 4 NIPGITLLNVSK CIIYNEDNGIIKAFRNIPGITLLNVSKLNI AFRNIPGITLLNVSKLNILKLAPGGHVGRF R N I S K L 0 0 2 0 0 0 0 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1267.75 P36578;H3BM89 P36578 223 234 RPL4 60S ribosomal protein L4 yes no 2 0.00027636 83.397 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 4 2 3 6 4 1.1365 1.0253 19.673 21 Median 1.0529 1.0132 20.13 2 0 Median 1.0694 0.91318 12.003 4 0 Median 0.96407 0.98824 5.2001 2 0 Median 1.154 1.0657 10.98 3 0 Median 1.0607 1.0906 29.427 6 0 Median 1.2631 1.0337 8.4546 4 0 Median 381270000 183830000 197440000 117130000 58344000 58784000 44209000 20811000 23398000 67716000 33240000 34476000 31401000 14458000 16943000 85234000 40087000 45147000 35586000 16894000 18692000 25621 2260 26983 136206;136207;136208;136209;136210;136211;136212;136213;136214;136215;136216;136217;136218;136219;136220;136221;136222;136223;136224;136225;136226 136950;136951;136952;136953;136954;136955;136956;136957;136958;136959;136960;136961;136962;136963;136964;136965;136966 136959 17 NIPGPHMVLVPK TLQTISLLGYMKHYRNIPGPHMVLVPKSTL HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP R N I P K S 0 0 1 0 0 0 0 1 1 1 1 1 1 0 3 0 0 0 0 2 0 0 12 0 1300.7326 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 227 238 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2;3 0.0081325 47.603 By MS/MS By matching By MS/MS By matching 1 1 5 1 0.76779 0.75162 16.361 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65295 0.69759 NaN 1 0 Median 1.1444 0.96004 NaN 1 0 Median 0.7132 0.74733 17.558 5 1 Median 0.91607 0.75593 NaN 1 0 Median 64271000 38156000 26115000 0 0 0 0 0 0 11221000 6834000 4386900 1220700 540600 680090 49851000 29717000 20134000 1977700 1064400 913290 25622 1608;643;167 26984 136227;136228;136229;136230;136231;136232;136233;136234 136967;136968;136969 136969 3 NIPMLFVR IDEETYEEIYKSTKRNIPMLFVRGDGVVLV IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ R N I V R G 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 8 0 988.55281 P62310 P62310 81 88 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 0.011113 57.559 By MS/MS By matching By MS/MS By matching 2 1 2 2 0.98802 0.95593 13.857 7 Median 1.0866 1.0534 13.73 2 1 Median 1.2563 1.0641 NaN 1 0 Median 0.85327 0.86365 2.2557 2 0 Median NaN NaN NaN 0 0 Median 1.0235 1.0805 17.813 2 0 Median NaN NaN NaN 0 0 Median 107000000 53130000 53871000 64362000 30686000 33676000 2511500 1136100 1375500 34392000 18288000 16104000 0 0 0 5734800 3019900 2714900 0 0 0 25623 2583 26985;26986 136235;136236;136237;136238;136239;136240;136241 136970;136971;136972;136973;136974;136975;136976;136977;136978 136972 1251 9 NIPMTLELLQSTR KKNAAGALDLLKELKNIPMTLELLQSTRIG LKNIPMTLELLQSTRIGMSVNAIRKQSTDE K N I T R I 0 1 1 0 0 1 1 0 0 1 3 0 1 0 1 1 2 0 0 0 0 0 13 0 1514.8127 A0A1W2PPZ5;P23193;E5RIS7;E5RJ93 A0A1W2PPZ5 33 45 TCEA1 Transcription elongation factor A protein 1 yes no 2 0.00018752 82.379 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1 0.81906 0.80719 21.632 9 Median 0.80936 0.80719 NaN 1 0 Median 0.99249 0.85776 8.5454 2 0 Median 0.84858 0.83323 3.7561 2 0 Median 0.9887 0.80519 17.133 3 0 Plateau NaN NaN NaN 0 0 Median 0.53599 0.4714 NaN 1 0 Median 100040000 50604000 49436000 13058000 7182600 5875300 3596800 1794900 1801900 21209000 10831000 10378000 61764000 30579000 31185000 0 0 0 412240 216210 196030 25624 341 26987;26988 136242;136243;136244;136245;136246;136247;136248;136249;136250 136979;136980;136981;136982;136983;136984;136985;136986;136987;136988;136989 136983 161 11 NIPPYFVALVPQEEELDDQK LEKEVAALCRYTPRRNIPPYFVALVPQEEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R N I Q K I 1 0 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 20 0 2343.1634 P12956;B1AHC9 P12956 405 424 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.056634 8.2879 By MS/MS By matching By matching 1 1 1 0.79944 0.77394 25.861 3 Median 0.79944 0.77394 NaN 1 0 Median 1.2561 1.1152 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78717 0.67658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2619000 1266200 1352800 1374100 672820 701250 580220 257330 322890 0 0 0 664690 336080 328610 0 0 0 0 0 0 25625 1985 26989 136251;136252;136253 136990 136990 1 NIPQGAPVK VMKDGKVIFPAPTPKNIPQGAPVKQKTVAE PAPTPKNIPQGAPVKQKTVAELEAEKAATI K N I V K Q 1 0 1 0 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 9 0 922.52362 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 443 451 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.020926 45.081 By matching By MS/MS 1 2 0.93419 0.81069 28.964 3 Median 0.56611 0.56074 NaN 1 0 Median 1.028 0.89715 14.332 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9859600 4080000 5779700 1456000 813010 642990 8403700 3266900 5136700 0 0 0 0 0 0 0 0 0 0 0 0 25626 2814 26990 136254;136255;136256 136991;136992 136992 2 NIPQSTEILKK FKPILSTRSLKGLVKNIPQSTEILKKLMTT GLVKNIPQSTEILKKLMTTNEIQSNIYT__ K N I K K L 0 0 1 0 0 1 1 0 0 2 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1269.7293 O95456 O95456 265 275 PSMG1 Proteasome assembly chaperone 1 yes yes 2 0.0023453 57.859 By MS/MS By matching 1 1 1.0064 0.95186 6.8263 2 Median 1.0256 0.99894 NaN 1 0 Median 0.98763 0.90701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8350000 3827300 4522600 7784000 3600100 4183900 565910 227210 338700 0 0 0 0 0 0 0 0 0 0 0 0 25627 1774 26991 136257;136258 136993;136994 136994 2 NIQATLHQK TKLEEKHNEESVSKKNIQATLHQKDLDCQQ ESVSKKNIQATLHQKDLDCQQLQSRLSASE K N I Q K D 1 0 1 0 0 2 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1051.5774 Q15075 Q15075 334 342 EEA1 Early endosome antigen 1 yes yes 2 0.039605 33.797 By matching By MS/MS 1 1 0.97335 0.8934 2.4399 2 Median 0.91129 0.87811 NaN 1 0 Median 1.0396 0.90894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1703000 896010 806990 490670 272070 218610 1212300 623950 588380 0 0 0 0 0 0 0 0 0 0 0 0 25628 2926 26992 136259;136260 136995 136995 1 NIQDTSDLDAIAK PPCDVVIKAVADYVRNIQDTSDLDAIAKDV VRNIQDTSDLDAIAKDVFQHSQSRTDDKVI R N I A K D 2 0 1 3 0 1 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1402.694 Q9NZB2;A0A0C4DH52 Q9NZB2 292 304 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.0011594 58.37 By MS/MS By matching 2 2 1.2909 1.0832 21.24 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4601 1.2164 23.663 2 0 Median NaN NaN NaN 0 0 Median 1.1918 0.99306 19.548 2 0 Median 6214200 2974700 3239500 0 0 0 0 0 0 0 0 0 2738000 1275300 1462700 0 0 0 3476100 1699400 1776700 25629 4186 26993 136261;136262;136263;136264 136996 136996 1 NIQDVQSQISK KLLEACIFKNNELLKNIQDVQSQISKIGLK ELLKNIQDVQSQISKIGLKDPTVPAVKHRK K N I S K I 0 0 1 1 0 3 0 0 0 2 0 1 0 0 0 2 0 0 0 1 0 0 11 0 1258.6517 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1442 1452 SYNE2 Nesprin-2 yes no 2 0.011611 60.398 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25630 3521 26994 136265 136997 136997 1 NIQGLFAPLK NFQLNQDKMNFSTLRNIQGLFAPLKLQMEF FSTLRNIQGLFAPLKLQMEFKAVQQVQRLP R N I L K L 1 0 1 0 0 1 0 1 0 1 2 1 0 1 1 0 0 0 0 0 0 0 10 0 1099.639 Q9Y244;A0A1W2PS02 Q9Y244 69 78 POMP Proteasome maturation protein yes no 2 0.0048213 51.854 By MS/MS By matching By matching By matching 1 1 1 1 0.9944 0.94658 8.874 4 Median 0.97624 0.92101 NaN 1 0 Median 1.1127 0.97285 NaN 1 0 Median 1.0129 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79872 0.84043 NaN 1 0 Median NaN NaN NaN 0 0 Median 16297000 7922600 8374700 14051000 6702900 7347600 188610 88040 100570 948010 463850 484160 0 0 0 1110200 667850 442350 0 0 0 25631 4372 26995 136266;136267;136268;136269 136998 136998 1 NIQGTITGDILPR SFLPQNKEEIERTIKNIQGTITGDILPRLH IKNIQGTITGDILPRLHKCLASTTKREEEH K N I P R L 0 1 1 1 0 1 0 2 0 3 1 0 0 0 1 0 2 0 0 0 0 0 13 0 1396.7674 O75691 O75691 1778 1790 UTP20 Small subunit processome component 20 homolog yes yes 2 5.2437E-07 111.06 By MS/MS By matching By MS/MS 2 1 1 1.0783 1.0632 22.178 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1923 1.3163 29.206 2 0 Median 1.1537 1.0018 NaN 1 0 Median 1.0078 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 9180300 4457200 4723100 0 0 0 0 0 0 6620000 3332400 3287600 463240 217470 245780 2097100 907360 1189700 0 0 0 25632 1691 26996 136270;136271;136272;136273 136999;137000;137001;137002;137003 137000 4 NIQVSHQEFSK TKVQESLKKQEGLLKNIQVSHQEFSKMKQS GLLKNIQVSHQEFSKMKQSNNEANLREEVL K N I S K M 0 0 1 0 0 2 1 0 1 1 0 1 0 1 0 2 0 0 0 1 0 0 11 0 1315.6521 Q8WUM4 Q8WUM4 628 638 PDCD6IP Programmed cell death 6-interacting protein yes yes 2;3 4.4383E-09 121.5 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 1.3002 1.2359 57.59 6 Median 1.281 1.2829 46.783 3 0 Median NaN NaN NaN 0 0 Median 1.6722 1.7362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82007 0.68003 79.214 2 1 Median 8199100 3616400 4582700 4312800 1943200 2369600 0 0 0 1024200 359090 665120 0 0 0 0 0 0 2862100 1314100 1548000 25633 3493 26997 136274;136275;136276;136277;136278;136279;136280 137004;137005;137006;137007;137008;137009;137010 137009 7 NIRDDEGFIIR FRLTIPRKSKLAVHRNIRDDEGFIIRHFAG AVHRNIRDDEGFIIRHFAGAVCYETTQFVE R N I I R H 0 2 1 2 0 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 0 11 1 1346.6943 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 570 580 MYO6 Unconventional myosin-VI yes no 2;3 0.00037915 96.015 By MS/MS By matching By matching 3 1 1 1.0776 1.1807 19.609 5 Median 1.0776 1.2115 2.7537 3 1 Plateau 1.3849 1.3351 NaN 1 0 Median 0.6586 0.801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17099000 7971000 9127600 13180000 5914600 7265700 1291200 555800 735420 2627100 1500600 1126500 0 0 0 0 0 0 0 0 0 25634 164 26998 136281;136282;136283;136284;136285 137011;137012;137013 137012 3 NIRDNEEKDSAFR PMLQQFIRPWCTSLRNIRDNEEKDSAFRGI LRNIRDNEEKDSAFRGICTMISVNPSGVIQ R N I F R G 1 2 2 2 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 13 2 1592.7543 Q92973;S4R398 Q92973 811 823 TNPO1 Transportin-1 no no 3 0.0048487 33.685 By MS/MS By matching 1 1 1.0678 1.2021 27.545 2 Median 0.91857 0.98935 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2413 1.4606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1843900 873030 970820 1156600 617620 539000 0 0 0 687240 255410 431830 0 0 0 0 0 0 0 0 0 25635 3570 26999 136286;136287 137014;137015 137014 2 NIREFEEEK EDEVFEEFCREIGVRNIREFEEEKVKRQNE REIGVRNIREFEEEKVKRQNEIAKKRLEFE R N I E K V 0 1 1 0 0 0 4 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 9 1 1192.5724 Q14683;G8JLG1 Q14683 788 796 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0026525 114.28 By MS/MS By MS/MS 1 1 0.47277 0.53645 73.133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79266 0.89974 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.28198 0.31985 NaN 1 0 Median NaN NaN NaN 0 0 Median 12359000 7972100 4387100 0 0 0 0 0 0 3215800 1908200 1307600 0 0 0 9143400 6063900 3079500 0 0 0 25636 2889 27000 136288;136289 137016;137017;137018 137016 3 NISAINFHSVVEK QFLQFSLIQCRKEFKNISAINFHSVVEKYV FKNISAINFHSVVEKYVSEFFKRGFGSGKR K N I E K Y 1 0 2 0 0 0 1 0 1 2 0 1 0 1 0 2 0 0 0 2 0 0 13 0 1456.7674 Q9UK61 Q9UK61 544 556 FAM208A Protein FAM208A yes yes 3 0.002138 53.754 By MS/MS 1 4.7726 4.9967 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.7726 4.9967 NaN 1 1 Median NaN NaN NaN 0 0 Median 12437000 2150700 10287000 0 0 0 0 0 0 0 0 0 0 0 0 12437000 2150700 10287000 0 0 0 25637 4307 27001 136290 137019 137019 1 NISAISYINQR ELEERAEALDRQRTKNISAISYINQRNREW QRTKNISAISYINQRNREWNIVESEKALVA K N I Q R N 1 1 2 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 1 0 0 0 11 0 1277.6728 Q92541;H0YKX1 Q92541 556 566 RTF1 RNA polymerase-associated protein RTF1 homolog yes no 2 0.040515 27.742 By MS/MS 1 1.0689 0.92083 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0689 0.92083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1305400 608540 696810 0 0 0 0 0 0 0 0 0 1305400 608540 696810 0 0 0 0 0 0 25638 3534 27002 136291 137020 137020 1 NISFNDK DRLTPKIGFPWSEIRNISFNDKKFVIKPID GFPWSEIRNISFNDKKFVIKPIDKKAPDFV R N I D K K 0 0 2 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 7 0 836.40283 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 247 253 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.062629 36.975 By matching By MS/MS By matching 2 1 1 1.0472 0.99453 50.657 4 Median NaN NaN NaN 0 0 Median 0.6908 0.59812 68.921 2 0 Median NaN NaN NaN 0 0 Median 1.1703 1.0158 NaN 1 0 Median 0.99753 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median 10608000 6008000 4600500 0 0 0 7577000 4395500 3181600 0 0 0 1725400 828580 896800 1306100 783940 522150 0 0 0 25639 2139;879;2235 27003 136292;136293;136294;136295 137021 137021 1 NISFNDKK DRLTPKIGFPWSEIRNISFNDKKFVIKPID FPWSEIRNISFNDKKFVIKPIDKKAPDFVF R N I K K F 0 0 2 1 0 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 0 0 8 1 964.49779 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 247 254 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.0044319 101.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.1262 1.2082 13.625 9 Median 1.0217 1.0134 19.314 2 0 Median 1.172 1.1132 24.555 2 0 Median 1.1219 1.2207 1.2378 2 0 Median 1.206 1.1454 9.9157 2 0 Median 1.0804 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median 43261000 20061000 23199000 5835200 2880700 2954400 21061000 9638100 11423000 13322000 6171600 7150300 2412400 1071800 1340600 630470 299170 331300 0 0 0 25640 2139;879;2235 27004 136296;136297;136298;136299;136300;136301;136302;136303;136304 137022;137023;137024;137025;137026;137027;137028;137029;137030 137029 9 NISFTVWDVGGQDK TIPTIGFNVETVEYKNISFTVWDVGGQDKI KNISFTVWDVGGQDKIRPLWRHYFQNTQGL K N I D K I 0 0 1 2 0 1 0 2 0 1 0 1 0 1 0 1 1 1 0 2 0 0 14 0 1564.7522 P84077;P61204;F5H423;F5H0C7 P84077 60 73 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 0.00083685 61.344 By MS/MS By matching By MS/MS 1 1 1 1.2223 1.0465 38.823 3 Median NaN NaN NaN 0 0 Median 1.2223 1.0465 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0657 0.87495 NaN 1 0 Median 1.6242 1.8409 NaN 1 1 Median NaN NaN NaN 0 0 Median 14053000 6024900 8028500 0 0 0 10182000 4593800 5587900 0 0 0 367990 154460 213530 3503800 1276700 2227100 0 0 0 25641 2549 27005 136305;136306;136307 137031;137032;137033 137032 3 NISHDTFGTTYGR LSMKMPKALKPKKKKNISHDTFGTTYGRIH KKNISHDTFGTTYGRIHMQKQDLSKLQTRK K N I G R I 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 1 3 0 1 0 0 0 13 0 1467.6743 Q9H7B2 Q9H7B2 253 265 RPF2 Ribosome production factor 2 homolog yes yes 2;3 1.7618E-07 113.07 By matching By MS/MS By MS/MS 1 5 3 1.0901 1.0272 11.027 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0149 1.0547 14.145 5 0 Median 1.2401 1.0004 3.9965 3 0 Median 65209000 29330000 35879000 0 0 0 0 0 0 0 0 0 1347900 312960 1035000 43494000 20251000 23243000 20367000 8766500 11601000 25642 3980 27006 136308;136309;136310;136311;136312;136313;136314;136315;136316 137034;137035;137036;137037;137038;137039;137040;137041;137042;137043 137039 10 NISHVHTMDFSPR PSCTVFSNFPVIKNKNISHVHTMDFSPRSG NKNISHVHTMDFSPRSGYFALGNEKGKALM K N I P R S 0 1 1 1 0 0 0 0 2 1 0 0 1 1 1 2 1 0 0 1 0 0 13 0 1539.7252 Q9Y5J1 Q9Y5J1 520 532 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 3 0.0018282 37.954 By MS/MS By matching By MS/MS 1 4 1 0.94838 1.006 34.55 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43833 0.46178 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95657 1.0162 5.8859 4 0 Median 0.90351 0.68348 NaN 1 0 Median 20173000 8849300 11324000 0 0 0 0 0 0 1733400 1101300 632060 0 0 0 17292000 7117200 10174000 1148200 630750 517430 25643 4458 27007 136317;136318;136319;136320;136321;136322 137044;137045 137044 2 NISHYEEQLVK AFERLLGPCMDIMKRNISHYEEQLVKMFGS IMKRNISHYEEQLVKMFGSSVDLGNLGQ__ R N I V K M 0 0 1 0 0 1 2 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1358.683 P13861;H7C330 P13861 381 391 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2;3 0.0001134 136.02 By MS/MS By MS/MS By MS/MS 2 1 1 1.1592 1.0556 12.48 4 Median 1.1624 1.0774 1.8891 2 0 Median NaN NaN NaN 0 0 Median 0.84386 0.83369 NaN 1 0 Median 1.1675 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41699000 17296000 24402000 30269000 12334000 17935000 0 0 0 4039100 1726100 2313100 7390500 3236500 4154000 0 0 0 0 0 0 25644 1998 27008 136323;136324;136325;136326 137046;137047;137048;137049;137050;137051 137050 6 NISLHGDGPLR EILDFICRTLSVSSKNISLHGDGPLRLLLL VSSKNISLHGDGPLRLLLLPSIHLEALDLL K N I L R L 0 1 1 1 0 0 0 2 1 1 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1177.6204 Q8IZL8;C9JFV4;I3L445 Q8IZL8 355 365 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 0.00013669 102.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2337 1.25 27.854 5 Median NaN NaN NaN 0 0 Median 1.2337 1.0648 NaN 1 0 Median 1.2772 1.4045 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.033 1.0636 22.844 2 0 Median 2.312 1.8811 NaN 1 0 Median 34014000 15150000 18863000 0 0 0 1538300 493630 1044700 9123400 3782700 5340700 0 0 0 21290000 10277000 11013000 2061900 596920 1465000 25645 3351 27009 136327;136328;136329;136330;136331 137052;137053;137054;137055;137056;137057;137058;137059;137060 137057 9 NISSAQIVGPGPKPEASAK TPPSYESVDDINADKNISSAQIVGPGPKPE AQIVGPGPKPEASAKLPSRPADNYDNFVLP K N I A K L 3 0 1 0 0 1 1 2 0 2 0 2 0 0 3 3 0 0 0 1 0 0 19 1 1849.9898 P53990 P53990 291 309 IST1 IST1 homolog yes yes 3 1.9653E-07 61.181 By matching By MS/MS By MS/MS 1 2 1 0.56776 0.56458 10.257 4 Median NaN NaN NaN 0 0 Median 0.55272 0.50123 NaN 1 0 Median 0.57161 0.60883 7.4127 2 0 Median 0.58086 0.55171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41799000 26682000 15117000 0 0 0 1723700 1239100 484570 32171000 20819000 11352000 7904900 4624300 3280600 0 0 0 0 0 0 25646 2477 27010 136332;136333;136334;136335 137061;137062;137063;137064;137065 137065 5 NITGTDDQVQQAMNSLK KLGELQGNHFTVVLRNITGTDDQVQQAMNS TGTDDQVQQAMNSLKEIGFINYYGMQRFGT R N I L K E 1 0 2 2 0 3 0 1 0 1 1 1 1 0 0 1 2 0 0 1 0 0 17 0 1861.884 Q96PZ0;E7EUH7 Q96PZ0 351 367 PUS7 Pseudouridylate synthase 7 homolog yes no 2 0.045803 21.759 By MS/MS By matching 1 1 0.93449 0.87273 0.96015 2 Median 0.90982 0.87868 NaN 1 0 Median 0.95983 0.86683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3476400 1810800 1665600 3277100 1714000 1563100 199320 96813 102500 0 0 0 0 0 0 0 0 0 0 0 0 25647 3716 27011 136336;136337 137066 137066 1 NITLDDASAPR AVAAPRPDRLVNRLKNITLDDASAPRLMVL NRLKNITLDDASAPRLMVLRQPRGPDNSMG K N I P R L 2 1 1 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1171.5833 O75534;E9PLT0 O75534 759 769 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.00016746 91.584 By MS/MS By MS/MS By MS/MS 2 1 2 0.98339 0.86491 2.963 4 Median 0.92051 0.87375 NaN 1 1 Median 1.0092 0.87204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98339 0.83862 3.2057 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20143000 9785700 10358000 6900400 3566100 3334300 7531300 3505400 4025900 0 0 0 5711600 2714100 2997500 0 0 0 0 0 0 25648 1684 27012 136338;136339;136340;136341;136342 137067;137068;137069;137070;137071;137072 137072 6 NITLNFGPQHPAAHGVLR PPWNDVDPPKDTIVKNITLNFGPQHPAAHG LNFGPQHPAAHGVLRLVMELSGEMVRKCDP K N I L R L 2 1 2 0 0 1 0 2 2 1 2 0 0 1 2 0 1 0 0 1 0 0 18 0 1941.0333 O75306 O75306 79 96 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 3;4 1.2753E-07 85.734 By MS/MS By matching By matching 2 1 2 0.69837 0.66644 24.731 5 Median 0.71998 0.68481 3.8454 2 0 Median 1.2817 1.0988 NaN 1 0 Median 0.61381 0.60676 3.0732 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52099000 30516000 21583000 29755000 17801000 11954000 2677800 1073400 1604400 19666000 11642000 8024400 0 0 0 0 0 0 0 0 0 25649 1657 27013 136343;136344;136345;136346;136347 137073;137074;137075 137075 3 NITNELLR GRAVQDSAERAKDLKNITNELLRIEPEKTR ERAKDLKNITNELLRIEPEKTRSTAEGEAF K N I L R I 0 1 2 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 971.53999 O60437;K7EKI8 O60437 551 558 PPL Periplakin yes no 2 0.044676 35.88 By MS/MS 1 1.2296 0.99824 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2296 0.99824 NaN 1 0 Median 1494900 592900 902040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1494900 592900 902040 25650 1371 27014 136348 137076 137076 1 NITRPFEDQTSLEFFSK VYALKKPYGVLYKKKNITRPFEDQTSLEFF TRPFEDQTSLEFFSKKSDCSLFMFGSHNKK K N I S K K 0 1 1 1 0 1 2 0 0 1 1 1 0 3 1 2 2 0 0 0 0 0 17 1 2058.0058 Q9H7B2;Q5VXN0 Q9H7B2 67 83 RPF2 Ribosome production factor 2 homolog yes no 3 0.0036618 26.412 By MS/MS By MS/MS 1 1 1.0194 1.0101 5.8405 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88861 0.96919 NaN 1 1 Median 1.1694 1.0526 NaN 1 0 Median 16324000 8722100 7601700 0 0 0 0 0 0 0 0 0 0 0 0 14157000 7859200 6297900 2166800 862960 1303800 25651 3980 27015 136349;136350 137077;137078 137078 2 NITVREEEKLELQK EIELFRVFSLSSEFKNITVREEEKLELQKL KNITVREEEKLELQKLLERVPIPVKESIEE K N I Q K L 0 1 1 0 0 1 4 0 0 1 2 2 0 0 0 0 1 0 0 1 0 0 14 2 1727.9418 O75643;A0A494C1A5 O75643 1026 1039 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.00047049 48.625 By MS/MS By MS/MS By MS/MS 1 2 1 1.1089 1.2619 19.469 4 Median 1.03 1.0888 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1626 1.4265 25.418 2 0 Median 1.1938 1.3362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52876000 27368000 25508000 7738000 3657800 4080200 0 0 0 42394000 22744000 19650000 2743800 966160 1777600 0 0 0 0 0 0 25652 1688 27016 136351;136352;136353;136354 137079;137080;137081;137082;137083;137084;137085 137082 7 NITYEELR VQGPDPNLEESPKRKNITYEELRNKNRESY EESPKRKNITYEELRNKNRESYEVSLTQKT K N I L R N 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 8 0 1036.5189 D6RDK6;D6RBN5;Q9NX40 D6RDK6 142 149 OCIAD1 OCIA domain-containing protein 1 yes no 2 0.004701 86.794 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2569 1.1065 117 4 Median 1.2187 1.1406 NaN 1 1 Median 1.3615 1.1321 NaN 1 0 Median 0.10429 0.10771 NaN 1 0 Median 1.2964 1.0814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61079000 35252000 25827000 17936000 8006900 9929300 19624000 8178500 11446000 18025000 16680000 1344900 5493900 2387000 3106900 0 0 0 0 0 0 25653 815 27017 136355;136356;136357;136358 137086;137087;137088;137089 137086 4 NITYLPAGQSVLLQLPQ LEAAEDIAYQLSRSRNITYLPAGQSVLLQL TYLPAGQSVLLQLPQ_______________ R N I P Q - 1 0 1 0 0 3 0 1 0 1 4 0 0 0 2 1 1 0 1 1 0 0 17 0 1854.0251 P35232 P35232 256 272 PHB Prohibitin yes yes 2 0.0056501 45.653 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20473000 0 0 5311000 0 0 15162000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25654 2233 27018 136359;136360 137090;137091 137091 2 NIVDKTASFVAR SKPVVGIIYPPPEVRNIVDKTASFVARNGP EVRNIVDKTASFVARNGPEFEARIRQNEIN R N I A R N 2 1 1 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 2 0 0 12 1 1319.7197 Q15459;F8WB66 Q15459 51 62 SF3A1 Splicing factor 3A subunit 1 yes no 2;3 0.00037323 93.058 By matching By matching By MS/MS By matching 1 1 2 1 1.2793 1.1251 19.604 5 Median 1.1318 1.0402 NaN 1 0 Median 1.3541 1.1351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2488 1.3736 29.924 2 0 Median 1.2793 1.1251 NaN 1 0 Median 40174000 17873000 22301000 13371000 6475100 6895600 4340900 1746500 2594400 0 0 0 0 0 0 21927000 9379900 12547000 535580 271800 263780 25655 2954 27019 136361;136362;136363;136364;136365 137092;137093 137093 2 NIVDQIWSFGPR FKGKLEQHLTGRRWRNIVDQIWSFGPRKCG RWRNIVDQIWSFGPRKCGPNILVNKSEDFQ R N I P R K 0 1 1 1 0 1 0 1 0 2 0 0 0 1 1 1 0 1 0 1 0 0 12 0 1430.7306 Q7Z2Z2 Q7Z2Z2 818 829 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 2 0.0034893 45.997 By MS/MS By matching 1 1 0.96452 0.91285 2.932 2 Median 0.88604 0.89412 NaN 1 0 Median 1.05 0.93197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1214100 640130 573990 1049000 563910 485130 165090 76225 88860 0 0 0 0 0 0 0 0 0 0 0 0 25656 3238 27020 136366;136367 137094;137095 137095 2 NIVEAAAVR RCVPKDKAIKKFVIRNIVEAAAVRDISEAS KKFVIRNIVEAAAVRDISEASVFDAYVLPK R N I V R D 3 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 941.52943 P62854;Q5JNZ5 P62854 43 51 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 0.00077811 98.458 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 4 3 4 1.1753 1.0403 20.468 22 Median 0.96782 0.96395 9.921 5 0 Median 1.0496 0.87641 20.003 4 0 Median 1.113 1.0892 5.7428 2 0 Median 1.328 1.0679 14.174 4 0 Median 1.2668 1.3388 24.313 3 1 Median 1.4349 1.1537 15.705 4 0 Median 518380000 236560000 281820000 185780000 88745000 97039000 229810000 103840000 125970000 40791000 17799000 22992000 28599000 12242000 16357000 17623000 7380100 10243000 15770000 6556400 9213400 25657 2601 27021 136368;136369;136370;136371;136372;136373;136374;136375;136376;136377;136378;136379;136380;136381;136382;136383;136384;136385;136386;136387;136388;136389 137096;137097;137098;137099;137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116;137117;137118;137119;137120;137121;137122 137096 27 NIVLSGGSTMFR VIQNCPIDVRRPLYKNIVLSGGSTMFRDFG LYKNIVLSGGSTMFRDFGRRLQRDLKRTVD K N I F R D 0 1 1 0 0 0 0 2 0 1 1 0 1 1 0 2 1 0 0 1 0 0 12 0 1280.6547 B4DXW1;P61158 B4DXW1 267 278 ACTR3 Actin-related protein 3 yes no 2 4.4889E-06 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 1 1 1.0016 0.96221 31.117 12 Median 1.0348 0.99607 15.672 2 0 Median 0.7624 0.65327 81.715 2 0 Median 0.97947 0.95461 16.474 4 0 Median 1.2081 1.0381 1.191 2 0 Median 0.81082 0.81693 NaN 1 0 Median 0.97911 0.92321 NaN 1 0 Median 234220000 114490000 119730000 51897000 24698000 27200000 25802000 11821000 13981000 79546000 40337000 39209000 73358000 35772000 37586000 3058400 1555600 1502800 556080 305570 250510 25658 607 27022;27023 136390;136391;136392;136393;136394;136395;136396;136397;136398;136399;136400;136401 137123;137124;137125;137126;137127;137128;137129;137130;137131;137132;137133;137134;137135;137136;137137;137138;137139;137140 137123 234 18 NIVLTGGNSLFPGFR SIQNLPEEMQPHFFKNIVLTGGNSLFPGFR NIVLTGGNSLFPGFRDRVYSEVRCLTPTDY K N I F R D 0 1 2 0 0 0 0 3 0 1 2 0 0 2 1 1 1 0 0 1 0 0 15 0 1590.8518 G3V1Y1;Q9GZN1 G3V1Y1 234 248 ACTR6 Actin-related protein 6 yes no 2 0.00025389 70.977 By MS/MS By matching By matching 2 2 2 0.99864 1.0081 9.4515 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93744 0.95851 4.8125 2 1 Median 1.1249 0.96368 18.925 2 0 Median 1.0073 1.0303 0.75985 2 0 Median NaN NaN NaN 0 0 Median 5295100 2566300 2728800 0 0 0 0 0 0 2910600 1526300 1384200 1149700 429300 720440 1234800 610630 624140 0 0 0 25659 1106 27024 136402;136403;136404;136405;136406;136407 137141;137142;137143 137142 3 NIVLYDMR NPIETFLLGSCASDRNIVLYDMRQATPLKK GSCASDRNIVLYDMRQATPLKKVILDMRTN R N I M R Q 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 8 0 1022.5219 A0A087WT20;Q9NV06;A0A087X1F8 A0A087WT20 372 379 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0074447 67.032 By MS/MS By matching 2 3 1.2598 1.2637 20.743 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1927 1.2405 2.622 2 0 Median 1.5832 1.2838 28.533 3 0 Median 12213000 5787500 6425000 0 0 0 0 0 0 0 0 0 0 0 0 9844800 4824400 5020500 2367700 963190 1404500 25660 13 27025 136408;136409;136410;136411;136412 137144;137145 137145 2 NIVPGWLQR QQHQGILSRVTESVKNIVPGWLQRYFNKNE VTESVKNIVPGWLQRYFNKNEDVCSCSTDT K N I Q R Y 0 1 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 9 0 1081.6033 P49790 P49790 49 57 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.0028856 68.915 By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 0.73193 0.78448 21.395 8 Median 0.64324 0.63794 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69315 0.75948 17.725 2 0 Median 1.2159 0.98551 15.085 3 0 Median 0.66296 0.70216 2.5329 2 0 Median NaN NaN NaN 0 0 Median 19266000 10908000 8358000 2601600 1545400 1056200 0 0 0 12034000 6894400 5140000 679810 317680 362140 3950200 2150600 1799600 0 0 0 25661 2400 27026 136413;136414;136415;136416;136417;136418;136419;136420 137146;137147;137148;137149;137150;137151;137152 137149 7 NIVQHTTDSSLEEK KDSKEFTQKNKKEKKNIVQHTTDSSLEEKQ KNIVQHTTDSSLEEKQRTLDSGTSEIVKSP K N I E K Q 0 0 1 1 0 1 2 0 1 1 1 1 0 0 0 2 2 0 0 1 0 0 14 0 1599.774 Q9H501 Q9H501 171 184 ESF1 ESF1 homolog yes yes 2 0.0013066 49.35 By MS/MS 1 1.1672 0.98146 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1672 0.98146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 693010 358830 334170 0 0 0 0 0 0 0 0 0 693010 358830 334170 0 0 0 0 0 0 25662 3969 27027 136421 137153 137153 1 NIVSAFGIIPR VEGQLLRGLSKYGMKNIVSAFGIIPRNNRL YGMKNIVSAFGIIPRNNRLMYIHSYQSYVW K N I P R N 1 1 1 0 0 0 0 1 0 3 0 0 0 1 1 1 0 0 0 1 0 0 11 0 1185.687 Q96PZ0 Q96PZ0 459 469 PUS7 Pseudouridylate synthase 7 homolog yes yes 2 0.041741 27.303 By MS/MS 1 0.75627 0.74296 NaN 1 Median 0.75627 0.74296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2448900 1326400 1122600 2448900 1326400 1122600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25663 3716 27028 136422 137154 137154 1 NIWIPMKPYYTK ______________________________ IIKNIWIPMKPYYTKVYQEIWIGMGLMGFI K N I T K V 0 0 1 0 0 0 0 0 0 2 0 2 1 0 2 0 1 1 2 0 0 0 12 1 1552.8112 G3V556;A0A0A0MTQ5;P56378 G3V556 8 19 C14orf2;MP68 6.8 kDa mitochondrial proteolipid yes no 3 0.0083787 30.059 By MS/MS By matching 1 1 0.94717 0.8672 24.723 2 Median 0.77751 0.72811 NaN 1 0 Median 1.1539 1.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3590200 1988800 1601300 3193800 1862400 1331400 396400 126430 269970 0 0 0 0 0 0 0 0 0 0 0 0 25664 199 27029 136423;136424 137155 137155 1 NIWVSGLSSNTK GSTSSTSGSSGSSTKNIWVSGLSSNTKAAD STKNIWVSGLSSNTKAADLKNLFGKYGKVL K N I T K A 0 0 2 0 0 0 0 1 0 1 1 1 0 0 0 3 1 1 0 1 0 0 12 0 1304.6725 Q9NWH9;H7BXE3 Q9NWH9 385 396 SLTM SAFB-like transcription modulator yes no 2 1.1307E-08 104.52 By MS/MS By MS/MS 1 2 0.68447 0.63737 55.475 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50984 0.43055 NaN 1 0 Median 0.91892 0.94352 NaN 1 1 Median NaN NaN NaN 0 0 Median 8982300 4520900 4461400 0 0 0 0 0 0 0 0 0 1707700 973560 734120 7274600 3547300 3727300 0 0 0 25665 4149 27030 136425;136426;136427 137156;137157;137158 137157 3 NIYAFMGTPVQK GKAMHTPKPAVSGEKNIYAFMGTPVQKLDL GEKNIYAFMGTPVQKLDLTENLTGSKRRLQ K N I Q K L 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 0 0 12 0 1367.6908 P46013 P46013 1550 1561 MKI67 Antigen KI-67 yes yes 2 3.5815E-06 129.85 By MS/MS By matching By MS/MS By matching 4 1 1 1 0.96487 0.94563 16.904 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90919 0.98556 16.204 4 1 Median 0.92993 0.86444 NaN 1 0 Median 1.1708 1.2255 NaN 1 1 Median 0.97644 0.84238 NaN 1 0 Median 95984000 47695000 48289000 0 0 0 0 0 0 88189000 43997000 44192000 628160 330270 297890 6785000 3174000 3611100 381630 193990 187640 25666 2335 27031;27032 136428;136429;136430;136431;136432;136433;136434 137159;137160;137161;137162;137163;137164;137165 137161 1060 7 NIYGNIEDLVVHIK TVGGWVSTRASGMKKNIYGNIEDLVVHIKM KNIYGNIEDLVVHIKMVTPRGIIEKSCQGP K N I I K M 0 0 2 1 0 0 1 1 1 3 1 1 0 0 0 0 0 0 1 2 0 0 14 0 1625.8777 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 324 337 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2;3 0.00073957 62.303 By MS/MS By MS/MS By matching By matching 1 2 2 1 1.0949 1.0024 6.7736 6 Median 1.0904 1.0554 NaN 1 0 Median 1.1675 1.0024 0.88674 2 0 Median 0.91566 0.97237 12.739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0993 0.95098 NaN 1 0 Median 9231800 4253900 4977900 1477900 701270 776600 6588000 2975700 3612300 1114400 556280 558080 0 0 0 0 0 0 51578 20689 30888 25667 1439 27033 136435;136436;136437;136438;136439;136440 137166;137167;137168 137168 3 NIYLMDTSGK TKITVRSNNREVAKRNIYLMDTSGKVVTAT EVAKRNIYLMDTSGKVVTATLWGEDADKFD R N I G K V 0 0 1 1 0 0 0 1 0 1 1 1 1 0 0 1 1 0 1 0 0 0 10 0 1140.5485 P27694;I3L4R8 P27694 345 354 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.0007323 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1.2889 1.1084 30.755 6 Median 0.97513 0.91445 NaN 1 0 Median 1.6505 1.5417 41.032 2 1 Median 1.3372 1.3458 NaN 1 0 Median 1.2424 1.0651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0845 0.90718 NaN 1 0 Median 35565000 16188000 19377000 13036000 6836200 6199800 4515700 1767000 2748600 14937000 6544600 8392500 1184800 462000 722790 0 0 0 1891900 578330 1313600 25668 2156 27034 136441;136442;136443;136444;136445;136446;136447 137169;137170;137171;137172;137173 137169 5 NIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE EELDFQKNIYSEELRETKRRHETRLVEIDN K N I L R E 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1022.5033 P02545;H0YAB0;Q3BDU5 P02545 209 216 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0024483 120.65 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 4 4 1.3479 1.1242 17.157 14 Median 0.98892 0.96554 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3184 1.3086 NaN 1 0 Median 1.3941 1.1894 27.431 4 0 Median 1.0737 1.0769 4.8646 4 0 Median 1.4392 1.1794 7.3827 4 0 Median 329480000 139820000 189660000 2702500 1443400 1259100 0 0 0 23362000 10125000 13236000 69043000 25439000 43603000 163010000 74681000 88327000 71365000 28131000 43234000 25669 1834;3010 27035 136448;136449;136450;136451;136452;136453;136454;136455;136456;136457;136458;136459;136460;136461 137174;137175;137176;137177;137178;137179;137180;137181;137182;137183;137184;137185;137186;137187;137188;137189;137190 137177 17 NIYSEELRETK ENRLQTMKEELDFQKNIYSEELRETKRRHE DFQKNIYSEELRETKRRHETRLVEIDNGKQ K N I T K R 0 1 1 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 1 1380.6885 P02545;H0YAB0;Q3BDU5 P02545 209 219 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 6.5702E-09 170.5 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 8 4 1.1698 1.1565 15.959 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.235 1.3126 9.275 3 0 Median 1.6535 1.5849 19.214 2 1 Median 1.0287 1.0928 8.169 8 1 Median 1.3383 1.1711 11.474 4 2 Median 520090000 239590000 280510000 0 0 0 0 0 0 27738000 13667000 14071000 20403000 9286600 11117000 398340000 186280000 212060000 73609000 30351000 43257000 25670 1834;3010 27036 136462;136463;136464;136465;136466;136467;136468;136469;136470;136471;136472;136473;136474;136475;136476;136477;136478 137191;137192;137193;137194;137195;137196;137197;137198;137199;137200;137201;137202;137203;137204;137205;137206;137207;137208;137209;137210;137211;137212;137213;137214;137215 137199 25 NIYSEELRETKR ENRLQTMKEELDFQKNIYSEELRETKRRHE FQKNIYSEELRETKRRHETRLVEIDNGKQR K N I K R R 0 2 1 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 12 2 1536.7896 P02545;H0YAB0;Q3BDU5 P02545 209 220 LMNA Prelamin-A/C;Lamin-A/C no no 3 1.7544E-06 99.5 By MS/MS By MS/MS 2 1 1.1902 1.2481 6.4394 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1412 1.3037 6.1694 2 0 Median 1.3844 1.2011 NaN 1 0 Median 49129000 22462000 26667000 0 0 0 0 0 0 0 0 0 0 0 0 37615000 17959000 19657000 11514000 4503400 7010500 25671 1834;3010 27037 136479;136480;136481 137216;137217;137218;137219;137220 137219 5 NIYVLQELDNPGAK VFYGTEKDKNSVNFKNIYVLQELDNPGAKR KNIYVLQELDNPGAKRILELDQFKGQQGQK K N I A K R 1 0 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 14 0 1572.8148 P12956;B1AHC9 P12956 101 114 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 3.5512E-11 175.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 3 3 0.93505 0.84877 23.206 19 Median 1.0072 0.94676 13.426 4 0 Linear 0.94278 0.80649 13.08 5 0 Median 0.86991 0.83629 35.448 4 1 Median 1.0054 0.84877 20.908 3 0 Median 0.95063 0.97291 27.504 3 0 Median NaN NaN NaN 0 0 Median 308820000 159790000 149030000 64275000 32488000 31787000 18883000 8635700 10247000 183310000 97789000 85522000 27302000 13522000 13780000 15049000 7350800 7698000 0 0 0 25672 1985 27038 136482;136483;136484;136485;136486;136487;136488;136489;136490;136491;136492;136493;136494;136495;136496;136497;136498;136499;136500 137221;137222;137223;137224;137225;137226;137227;137228;137229;137230;137231;137232;137233;137234;137235;137236;137237;137238;137239;137240 137228 20 NIYVLQELDNPGAKR VFYGTEKDKNSVNFKNIYVLQELDNPGAKR NIYVLQELDNPGAKRILELDQFKGQQGQKR K N I K R I 1 1 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 15 1 1728.9159 P12956;B1AHC9 P12956 101 115 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 4.1935E-08 136.48 By MS/MS 2 1.0891 1.0927 4.1403 2 Median 1.0891 1.0927 4.1403 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22656000 11168000 11487000 22656000 11168000 11487000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25673 1985 27039 136501;136502 137241;137242;137243 137242 3 NKADQQLVEIDKK PYLIAMGTDPEPAMRNKADQQLVEIDKKYA MRNKADQQLVEIDKKYAGFIHMKAVAGMKM R N K K K Y 1 0 1 2 0 2 1 0 0 1 1 3 0 0 0 0 0 0 0 1 0 0 13 2 1527.8257 A0A590UJS4;Q6KC79 A0A590UJS4 2336 2348 NIPBL Nipped-B-like protein yes no 3 0.0034845 35.891 By matching By matching By MS/MS 2 2 1 0.84155 0.98512 8.533 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87611 0.9886 15.987 2 0 Median 0.87711 0.96926 5.6082 2 0 Median 0.84155 0.98512 NaN 1 0 Median NaN NaN NaN 0 0 Median 7898100 3903900 3994200 0 0 0 0 0 0 2972000 1395400 1576700 917510 414220 503300 4008600 2094300 1914200 0 0 0 25674 488 27040 136503;136504;136505;136506;136507 137244;137245 137244 2 NKDLEGQLSDLEQR QRDSLTQKLQEVEIRNKDLEGQLSDLEQRL RNKDLEGQLSDLEQRLEKSQNEQEAFRNNL R N K Q R L 0 1 1 2 0 2 2 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 14 1 1643.8115 Q86YM7;Q86YM6 Q86YM7 298 311 HOMER1 Homer protein homolog 1 yes no 3 0.00093762 40.237 By MS/MS 1 1.0093 1.1475 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0093 1.1475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6435500 3415700 3019800 0 0 0 0 0 0 6435500 3415700 3019800 0 0 0 0 0 0 0 0 0 25675 3307 27041 136508 137246 137246 1 NKDLPESALR NGVVDKSLFSNVVTKNKDLPESALRDLIVA NVVTKNKDLPESALRDLIVATIAVKYTQSN K N K L R D 1 1 1 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 1 1141.6091 P31939;H7C1S2 P31939 407 416 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.005479 68.016 By MS/MS 1 1.0597 0.96989 NaN 1 Median NaN NaN NaN 0 0 Median 1.0597 0.96989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4328200 2054100 2274200 0 0 0 4328200 2054100 2274200 0 0 0 0 0 0 0 0 0 0 0 0 25676 2207 27042 136509 137247 137247 1 NKDPILHVLR ______________________________ AAAERNKDPILHVLRQYLDPAQRGVRVLEV R N K L R Q 0 1 1 1 0 0 0 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 10 1 1203.7088 H3BS73;H3BRT2;H3BNB2;A0A087WYU2;Q96S19 H3BS73 10 19 C16orf13 UPF0585 protein C16orf13 yes no 3 0.0097779 45.598 By MS/MS 1 1.9056 1.9952 NaN 1 Median 1.9056 1.9952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6606900 1352700 5254200 6606900 1352700 5254200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25677 88 27043 136510 137248 137248 1 NKDQGTYEDYVEGLR LDFEHFLPMLQTVAKNKDQGTYEDYVEGLR NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K N K L R V 0 1 1 2 0 1 2 2 0 0 1 1 0 0 0 0 1 0 2 1 0 0 15 1 1785.817 F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;G3V1Y7;F8VPF3;F8VZU9;F8W180 F8W1R7 80 94 MYL6 Myosin light polypeptide 6 yes no 2;3 9.9373E-10 153.95 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1.0038 0.9901 16.721 11 Median 1.061 1.0433 11.803 4 0 Median 1.1214 0.9901 17.447 3 0 Median 0.764 0.78831 7.1923 2 0 Median NaN NaN NaN 0 0 Median 1.022 1.153 5.3968 2 0 Median NaN NaN NaN 0 0 Median 160910000 82694000 78217000 58081000 26485000 31595000 12214000 5794700 6419300 81169000 45662000 35507000 0 0 0 9447700 4752000 4695700 0 0 0 25678 1082 27044 136511;136512;136513;136514;136515;136516;136517;136518;136519;136520;136521 137249;137250;137251;137252;137253;137254;137255;137256;137257;137258;137259;137260;137261;137262;137263;137264 137252 16 NKDSNKPVTIPENSEIK GGKKSLEAKKTGNVKNKDSNKPVTIPENSE DSNKPVTIPENSEIKTSIEVKATENCAKEA K N K I K T 0 0 3 1 0 0 2 0 0 2 0 3 0 0 2 2 1 0 0 1 0 0 17 2 1911.9902 Q14966 Q14966 852 868 ZNF638 Zinc finger protein 638 yes yes 3 0.068351 9.5303 By matching By MS/MS 1 1 0.59955 0.64968 26.117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4662 0.54013 NaN 1 0 Median 0.77103 0.78146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6525200 3155100 3370100 0 0 0 0 0 0 5287600 2553100 2734500 1237600 602010 635580 0 0 0 0 0 0 25679 2903 27045 136522;136523 137265 137265 1 NKEDQYDHLDAADMTK GKQIQQYMKIISSFKNKEDQYDHLDAADMT KEDQYDHLDAADMTKVEKSTNEAMEWMNNK K N K T K V 2 0 1 4 0 1 1 0 1 0 1 2 1 0 0 0 1 0 1 0 0 0 16 1 1892.8211 P34932 P34932 718 733 HSPA4 Heat shock 70 kDa protein 4 yes yes 2;3 3.617E-46 223.06 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 1.1717 1.1089 24.893 9 Median 1.1717 1.2193 32.733 3 0 Median 1.2275 1.1089 1.2862 3 0 Plateau 1.4727 1.6813 NaN 1 0 Median 0.91823 0.88578 2.7542 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119460000 50421000 69038000 40779000 15918000 24861000 61316000 26986000 34330000 10492000 3721300 6770400 6871800 3795600 3076200 0 0 0 0 0 0 25680 2230 27046 136524;136525;136526;136527;136528;136529;136530;136531;136532 137266;137267;137268;137269;137270;137271;137272;137273;137274;137275;137276 137272 11 NKEEAAEYAK HKRRRIALKKQRTKKNKEEAAEYAKLLAKR QRTKKNKEEAAEYAKLLAKRMKEAKEKRQE K N K A K L 3 0 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 10 1 1151.5459 P62753;A2A3R5 P62753 202 211 RPS6 40S ribosomal protein S6 yes no 2 1.5258E-06 163.38 By MS/MS By MS/MS By matching 2 2 4 1.0558 1.0201 5.9811 8 Median 1.0137 1.0083 1.9149 2 0 Median 1.1028 1.004 1.9801 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0521 1.1165 5.6796 4 0 Median NaN NaN NaN 0 0 Median 16644000 8023700 8620600 9018500 4376400 4642100 5811500 2751300 3060200 0 0 0 0 0 0 1814400 896090 918340 0 0 0 25681 2596 27047 136533;136534;136535;136536;136537;136538;136539;136540 137277;137278;137279;137280;137281;137282 137281 6 NKEHEIEVIDQR KIETIIKEQFALEMKNKEHEIEVIDQRLIE EMKNKEHEIEVIDQRLIEARRMMDKLRACI K N K Q R L 0 1 1 1 0 1 3 0 1 2 0 1 0 0 0 0 0 0 0 1 0 0 12 1 1508.7583 Q9ULM3 Q9ULM3 56 67 YEATS2 YEATS domain-containing protein 2 yes yes 3 0.016323 41.052 By MS/MS By MS/MS 2 1 1.3462 1.5401 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3462 1.5401 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 858960 366850 492110 0 0 0 0 0 0 858960 366850 492110 0 0 0 0 0 0 0 0 0 25682 4326 27048 136541;136542;136543 137283;137284;137285 137283 3 NKEIFLR EVNRMMKLIINSLYKNKEIFLRELISNASD LIINSLYKNKEIFLRELISNASDALDKIRL K N K L R E 0 1 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 1 918.5287 P14625;Q96GW1;A0A1W2PRR1;F8W026 P14625 96 102 HSP90B1 Endoplasmin yes no 2 0.053468 80.462 By MS/MS By MS/MS By matching 4 1 1 1.0207 1.0987 13.27 6 Median 1.0207 1.0408 12.311 4 0 Median 1.3473 1.3344 NaN 1 0 Median 0.94297 1.0773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36423000 15207000 21217000 20531000 8814000 11717000 15121000 5985500 9135800 771470 407090 364380 0 0 0 0 0 0 0 0 0 25683 2006 27049 136544;136545;136546;136547;136548;136549 137286;137287;137288;137289 137289 4 NKEINSDQATQGNISSDR RIISVTPVKNIDPVKNKEINSDQATQGNIS INSDQATQGNISSDRGKKRTVTAAGAENIQ K N K D R G 1 1 3 2 0 2 1 1 0 2 0 1 0 0 0 3 1 0 0 0 0 0 18 1 1975.9195 Q29RF7 Q29RF7 1218 1235 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.067297 9.0012 By MS/MS 1 0.81822 0.93443 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81822 0.93443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1377400 614980 762440 0 0 0 0 0 0 1377400 614980 762440 0 0 0 0 0 0 0 0 0 25684 3003 27050 136550 137290;137291 137290 2 NKELEIAQDR ELEKLNNQLKALTEKNKELEIAQDRNIAIQ ALTEKNKELEIAQDRNIAIQSQFTRTKEEL K N K D R N 1 1 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1214.6255 P12270 P12270 96 105 TPR Nucleoprotein TPR yes yes 2;3 0.00012056 98.033 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 3 4 5 1 1 1.048 1.1087 32.489 14 Median 1.9711 2.0189 NaN 1 0 Median 1.0893 1.0451 24.342 3 2 Median 1.0098 1.1877 27.525 4 0 Median 1.2029 1.1407 20.035 4 1 Median 0.60392 0.68249 NaN 1 0 Median 0.74793 0.66439 NaN 1 0 Median 26105000 12398000 13707000 617370 213850 403520 3961600 2060000 1901600 16313000 7799300 8513500 3655600 1579900 2075700 820870 339610 481260 736920 405320 331590 25685 1978 27051 136551;136552;136553;136554;136555;136556;136557;136558;136559;136560;136561;136562;136563;136564;136565 137292;137293;137294;137295;137296;137297;137298;137299;137300;137301;137302;137303;137304;137305;137306 137297 15 NKEPPAPAQQLQPQPVAVQGPEPAR PAAVRAGPDEDLSHRNKEPPAPAQQLQPQP LQPQPVAVQGPEPARVEKIFTPAAPVHTNK R N K A R V 4 1 1 0 0 5 2 1 0 0 1 1 0 0 7 0 0 0 0 2 0 0 25 1 2646.3878 Q9HC07;D6RBL0;D6RD79 Q9HC07 43 67 TMEM165 Transmembrane protein 165 yes no 3 9.75E-37 145.83 By MS/MS By MS/MS 2 2 0.38272 0.37407 17.525 4 Median 0.31232 0.3202 8.4831 2 0 Median 0.45807 0.42663 5.0857 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53621000 36626000 16994000 15530000 10621000 4908100 38091000 26005000 12086000 0 0 0 0 0 0 0 0 0 0 0 0 25686 4023 27052 136566;136567;136568;136569 137307;137308;137309;137310;137311 137310 5 NKEPPAPAQQLQPQPVAVQGPEPARVEK PAAVRAGPDEDLSHRNKEPPAPAQQLQPQP QPVAVQGPEPARVEKIFTPAAPVHTNKEDP R N K E K I 4 1 1 0 0 5 3 1 0 0 1 2 0 0 7 0 0 0 0 3 0 0 28 2 3002.5938 Q9HC07 Q9HC07 43 70 TMEM165 Transmembrane protein 165 yes yes 4 4.1297E-14 57.299 By MS/MS 2 0.28834 0.30926 7.8353 2 Median 0.28834 0.30926 7.8353 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13028000 10266000 2761500 13028000 10266000 2761500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25687 4023 27053 136570;136571 137312;137313 137312 2 NKEQHLSENEPVDTNSDNNLFTDTDLK SLLEQTQPATPSLWKNKEQHLSENEPVDTN DTNSDNNLFTDTDLKSIVKNSASKSHAAEK K N K L K S 0 0 5 4 0 1 3 0 1 0 3 2 0 1 1 2 3 0 0 1 0 0 27 1 3116.417 O60934;A0A0C4DG07 O60934 503 529 NBN Nibrin yes no 4 0.014665 22.313 By MS/MS 1 3.7242 4.2473 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.7242 4.2473 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20420000 5864400 14555000 0 0 0 0 0 0 20420000 5864400 14555000 0 0 0 0 0 0 0 0 0 25688 1641 27054 136572 137314 137314 1 NKEQLSDMMMINK TLQDVVSHSKKLTKKNKEQLSDMMMINKQK KKNKEQLSDMMMINKQKGGLKALSKEKREK K N K N K Q 0 0 2 1 0 1 1 0 0 1 1 2 3 0 0 1 0 0 0 0 0 0 13 1 1580.7361 P46940;A0A0J9YXZ5;H0YLE8 P46940 941 953 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 6.4809E-07 98.105 By MS/MS By MS/MS 3 1 1.0751 1.0301 3.838 4 Median 1.1279 1.0766 4.7005 3 2 Plateau 1.062 1.0286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66157000 32465000 33692000 63662000 31371000 32291000 2494400 1093200 1401300 0 0 0 0 0 0 0 0 0 0 0 0 25689 2350 27055 136573;136574;136575;136576 137315;137316;137317;137318;137319 137315 5 NKETLGSEAVSSNVIDYGHASK RKMGRRLPNLPSQSRNKETLGSEAVSSNVI EAVSSNVIDYGHASKYGYTEDPLEVRIYDP R N K S K Y 2 0 2 1 0 0 2 2 1 1 1 2 0 0 0 4 1 0 1 2 0 0 22 1 2305.1186 Q14966 Q14966 195 216 ZNF638 Zinc finger protein 638 yes yes 3;4 6.2284E-27 122.47 By MS/MS By matching By matching 2 2 1 0.81021 0.94083 34.983 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85583 0.99398 7.7706 2 1 Median NaN NaN NaN 0 0 Median 0.60562 0.6634 3.5786 2 0 Median 1.6865 1.5265 NaN 1 0 Median 70299000 36768000 33531000 0 0 0 0 0 0 59810000 31031000 28779000 0 0 0 9593900 5409100 4184700 895030 327320 567710 25690 2903 27056 136577;136578;136579;136580;136581 137320;137321;137322 137321 3 NKFDVDAADEK NVRLWEAGWKQRYYKNKFDVDAADEKFRRK RYYKNKFDVDAADEKFRRKVVQSYVEGLCW K N K E K F 2 0 1 3 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 11 1 1250.5779 Q9H0D6 Q9H0D6 523 533 XRN2 5-3 exoribonuclease 2 yes yes 2;3 0.00090036 76.282 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.77885 0.80148 11.008 6 Median NaN NaN NaN 0 0 Median 0.94582 0.8831 NaN 1 0 Median 0.69206 0.79126 0.19363 2 0 Median 0.77885 0.75133 10.76 2 0 Median 0.86073 0.96256 NaN 1 0 Median NaN NaN NaN 0 0 Median 9964700 5453900 4510900 0 0 0 2897200 1444400 1452800 4384800 2566700 1818100 1942100 1076500 865590 740550 366220 374330 0 0 0 25691 3924 27057 136582;136583;136584;136585;136586;136587 137323;137324;137325;137326 137325 4 NKFDVDAADEKFR NVRLWEAGWKQRYYKNKFDVDAADEKFRRK YKNKFDVDAADEKFRRKVVQSYVEGLCWVL K N K F R R 2 1 1 3 0 0 1 0 0 0 0 2 0 2 0 0 0 0 0 1 0 0 13 2 1553.7474 Q9H0D6 Q9H0D6 523 535 XRN2 5-3 exoribonuclease 2 yes yes 3 0.00020807 68.83 By MS/MS By MS/MS By matching 1 1 1 0.95523 1.1574 14.758 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0312 1.2847 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88482 1.0427 NaN 1 0 Median NaN NaN NaN 0 0 Median 13646000 6743000 6903400 0 0 0 0 0 0 7692900 3484500 4208400 0 0 0 5953500 3258500 2695000 0 0 0 25692 3924 27058 136588;136589;136590 137327;137328;137329 137329 3 NKFEEAER DEQTQAFIDAAQEARNKFEEAERSLKDMEE DAAQEARNKFEEAERSLKDMEESIRNLEQE R N K E R S 1 1 1 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 8 1 1021.4829 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 382 389 PRKCSH Glucosidase 2 subunit beta yes no 2 0.016416 94.302 By matching By MS/MS By matching 3 2 1 1.1068 1.0835 15.846 6 Median 1.0132 1.0284 24.422 3 0 Median 1.2141 1.1035 0.24266 2 0 Median 1.0019 1.0657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25966000 12001000 13965000 12625000 6007000 6617700 11862000 5352000 6510400 1478600 641650 836950 0 0 0 0 0 0 0 0 0 25693 1378 27059 136591;136592;136593;136594;136595;136596 137330;137331 137330 2 NKGDSHLNVQVSNFK TEQLTTASFPVGSKKNKGDSHLNVQVSNFK NKGDSHLNVQVSNFKSGKGDSTLQVSSGLN K N K F K S 0 0 3 1 0 1 0 1 1 0 1 2 0 1 0 2 0 0 0 2 0 0 15 1 1685.8485 Q86UE4;E5RJU9 Q86UE4 247 261 MTDH Protein LYRIC yes no 3 0.0021551 33.796 By matching By MS/MS By MS/MS 2 3 1 0.98438 0.9664 17.008 6 Median 1.1659 1.1513 12.438 2 0 Median 0.94728 0.91637 8.1611 3 2 Median NaN NaN NaN 0 0 Median 0.78964 0.7714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20202000 9865200 10336000 9173600 4478600 4694900 9665300 4778700 4886500 0 0 0 1362700 607820 754880 0 0 0 0 0 0 25694 3276 27060 136597;136598;136599;136600;136601;136602 137332;137333;137334;137335 137332 4 NKGQDLLALIVAQHR LGGVLLFPVDDKESRNKGQDLLALIVAQHR NKGQDLLALIVAQHRDRSNVLSGIKMAALE R N K H R D 2 1 1 1 0 2 0 1 1 1 3 1 0 0 0 0 0 0 0 1 0 0 15 1 1674.9529 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 792 806 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 3 0.0029408 31.389 By MS/MS By matching 1 1 0.88513 0.92451 1.995 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82595 0.93765 NaN 1 0 Median 0.94854 0.91156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5074300 2852700 2221500 0 0 0 0 0 0 5001500 2818200 2183300 72765 34505 38260 0 0 0 0 0 0 25695 3293 27061 136603;136604 137336;137337 137336 2 NKHEAMITDLEER LTEEEEKSKSLAKLKNKHEAMITDLEERLR LKNKHEAMITDLEERLRREEKQRQELEKTR K N K E R L 1 1 1 1 0 0 3 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 13 1 1584.7566 P35579 P35579 1023 1035 MYH9 Myosin-9 yes yes 2;3;4 2.5957E-07 115.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 2 3 1 1 1.0985 1.1507 20.225 15 Median 1.1609 1.1507 15.484 3 0 Median 1.087 1.023 9.9513 5 0 Median 1.0395 1.2404 2.0209 2 0 Median 1.0985 1.0605 29.005 3 0 Median 1.2605 1.4276 NaN 1 0 Median 1.9564 1.7066 NaN 1 0 Median 351450000 160170000 191280000 177440000 81681000 95759000 145200000 65034000 80164000 15787000 8229200 7557900 5108300 2537900 2570500 6427000 2351900 4075100 1488400 338260 1150200 25696 2244 27062;27063 136605;136606;136607;136608;136609;136610;136611;136612;136613;136614;136615;136616;136617;136618;136619;136620;136621 137338;137339;137340;137341;137342;137343;137344;137345;137346;137347;137348;137349;137350;137351;137352;137353;137354;137355;137356;137357;137358;137359 137352 986 22 NKHIMIDLGTGNNNK MYELYDPCTVMFFFRNKHIMIDLGTGNNNK NKHIMIDLGTGNNNKINWAMEDKQEMVDII R N K N K I 0 0 4 1 0 0 0 2 1 2 1 2 1 0 0 0 1 0 0 0 0 0 15 1 1667.8413 P83876;K7ESL1 P83876 87 101 TXNL4A Thioredoxin-like protein 4A yes no 3 4.2873E-05 78.505 By MS/MS By MS/MS By MS/MS 1 1 1 1.1566 1.0027 16.815 3 Median 1.3902 1.3018 NaN 1 0 Median 1.1566 1.0027 NaN 1 0 Median 0.93146 0.95092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12565000 5654000 6911200 2643600 977130 1666500 6755000 3171300 3583600 3166600 1505500 1661100 0 0 0 0 0 0 0 0 0 25697 2662 27064 136622;136623;136624 137360;137361;137362;137363 137362 4 NKINELELR PHLLDQLKAQNQELRNKINELELRLQGHEK QNQELRNKINELELRLQGHEKEMKGQVNKF R N K L R L 0 1 2 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1127.6299 P49454 P49454 292 300 CENPF Centromere protein F yes yes 2 0.011747 71.692 By MS/MS 1 2.0911 2.4168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0911 2.4168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2210500 963190 1247300 0 0 0 0 0 0 2210500 963190 1247300 0 0 0 0 0 0 0 0 0 25698 2383 27065 136625 137364 137364 1 NKITLQDVVSHSK NDLNLMDIKIGLLVKNKITLQDVVSHSKKL VKNKITLQDVVSHSKKLTKKNKEQLSDMMM K N K S K K 0 0 1 1 0 1 0 0 1 1 1 2 0 0 0 2 1 0 0 2 0 0 13 1 1467.8045 P46940;A0A0J9YXZ5;H0YLE8 P46940 923 935 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 1.1382E-11 110.92 By MS/MS 2 1.1349 1.0894 NaN 1 Median 1.1349 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14012000 4968700 9043600 14012000 4968700 9043600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25699 2350 27066 136626;136627 137365;137366 137366 2 NKITQSNAILR LDLDFPNLPYLLDGKNKITQSNAILRYIAR LDGKNKITQSNAILRYIARKHNMCGETEEE K N K L R Y 1 1 2 0 0 1 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 1 1256.7201 A0A0A0MTN3;P21266 A0A0A0MTN3 72 82 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.042944 39.305 By MS/MS By matching 1 1 1.2623 1.2588 2.1788 2 Median 1.2145 1.2784 NaN 1 0 Median 1.312 1.2396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2058700 1026100 1032600 1567400 814770 752600 491290 211290 280000 0 0 0 0 0 0 0 0 0 0 0 0 25700 197 27067 136628;136629 137367 137367 1 NKKPLIQEESDTIVSSSK SKLASADDIGTLICKNKKPLIQEESDTIVS PLIQEESDTIVSSSKSALHSSVPKSTNDRD K N K S K S 0 0 1 1 0 1 2 0 0 2 1 3 0 0 1 4 1 0 0 1 0 0 18 2 2002.0582 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1359 1376 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3;4 2.3372E-06 59.281 By MS/MS By MS/MS 3 1 0.73454 0.88097 12.639 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73257 0.84874 6.0726 3 0 Median 1.0668 1.0812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29645000 16616000 13030000 0 0 0 0 0 0 27150000 15302000 11849000 2494900 1313900 1181000 0 0 0 0 0 0 25701 2762 27068 136630;136631;136632;136633 137368;137369;137370;137371;137372;137373;137374;137375;137376 137369 9 NKKPSLTAVIDK SQNQHGSSKGKSPSRNKKPSLTAVIDKLKH PSRNKKPSLTAVIDKLKHGVVTSGPGGEDP R N K D K L 1 0 1 1 0 0 0 0 0 1 1 3 0 0 1 1 1 0 0 1 0 0 12 2 1312.7715 Q15648 Q15648 1298 1309 MED1 Mediator of RNA polymerase II transcription subunit 1 yes yes 3 0.012906 26.532 By matching By MS/MS 1 1 0.7788 0.87713 9.1347 2 Median 0.75103 0.82227 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80759 0.93566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2934100 1657400 1276700 435720 196170 239540 0 0 0 2498300 1461200 1037100 0 0 0 0 0 0 0 0 0 25702 2961 27069 136634;136635 137377 137377 1 NKLAELEEALQK ADAEQRGELALKDARNKLAELEEALQKAKQ DARNKLAELEEALQKAKQDMARLLREYQEL R N K Q K A 2 0 1 0 0 1 3 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1384.7562 CON__P13647;P13647;H0YI76 CON__P13647 430 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2;3 0.0032644 89.9 By MS/MS By MS/MS 1 1 0.12004 0.13435 9.3132 2 Median 0.1317 0.14349 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10941 0.12579 NaN 1 1 Median NaN NaN NaN 0 0 Median 7947300 6614500 1332900 6414300 5136500 1277800 0 0 0 0 0 0 0 0 0 1533100 1478000 55085 0 0 0 + 25703 757 27070 136636;136637 137378;137379 137378 2 NKLDFLRPYTVPNK DLGSGSNIDLCVISKNKLDFLRPYTVPNKK KNKLDFLRPYTVPNKKGTRLGRYRCEKGTT K N K N K K 0 1 2 1 0 0 0 0 0 0 2 2 0 1 2 0 1 0 1 1 0 0 14 2 1703.9359 Q99436 Q99436 224 237 PSMB7 Proteasome subunit beta type-7 yes yes 3 0.0065505 27.34 By MS/MS By matching 2 1 0.85083 0.86163 5.2752 3 Median 0.82976 0.87142 1.5979 2 0 Median 0.91925 0.79702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43561000 23868000 19693000 39100000 21692000 17407000 4461900 2175400 2286400 0 0 0 0 0 0 0 0 0 0 0 0 25704 3744 27071 136638;136639;136640 137380;137381;137382 137381 3 NKLDHYAIIK LRRQPKYPRKSAPRRNKLDHYAIIKFPLTT SAPRRNKLDHYAIIKFPLTTESAMKKIEDN R N K I K F 1 0 1 1 0 0 0 0 1 2 1 2 0 0 0 0 0 0 1 0 0 0 10 1 1213.6819 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 71 80 RPL23A 60S ribosomal protein L23a yes no 2;3 0.00011264 94.692 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 4 1 1.1134 1.1058 19.103 17 Median 1.1102 1.1253 2.4813 2 0 Median 1.342 1.1928 19.052 4 0 Median 1.0541 1.0472 37.087 3 0 Median 1.235 1.1133 12.134 3 0 Plateau 1.0462 1.1556 7.6308 4 0 Median 1.2641 1.0971 NaN 1 0 Median 314660000 142950000 171710000 148550000 68846000 79706000 56841000 24363000 32479000 42846000 20047000 22799000 14735000 6171800 8563400 42985000 19648000 23337000 8704300 3877700 4826600 25705 544 27072 136641;136642;136643;136644;136645;136646;136647;136648;136649;136650;136651;136652;136653;136654;136655;136656;136657 137383;137384;137385;137386;137387;137388;137389;137390;137391;137392;137393;137394;137395;137396;137397;137398;137399;137400 137390 18 NKLDHYAIIKFPLTTESAMK LRRQPKYPRKSAPRRNKLDHYAIIKFPLTT YAIIKFPLTTESAMKKIEDNNTLVFIVDVK R N K M K K 2 0 1 1 0 0 1 0 1 2 2 3 1 1 1 1 2 0 1 0 0 0 20 2 2319.2297 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 71 90 RPL23A 60S ribosomal protein L23a yes no 4 8.7088E-09 70.414 By MS/MS By matching By MS/MS 1 1 1 0.99589 1.0517 4.0789 3 Median 0.99589 1.0517 NaN 1 0 Median 1.0026 0.98113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93272 1.0541 NaN 1 0 Median NaN NaN NaN 0 0 Median 30820000 13864000 16956000 23046000 10035000 13011000 1369900 659920 709950 0 0 0 0 0 0 6404200 3169500 3234700 0 0 0 25706 544 27073 136658;136659;136660 137401;137402;137403;137404 137402 4 NKLDLETLTDILQHQIR DIEAYLERIGYKKSRNKLDLETLTDILQHQ LDLETLTDILQHQIRAVPFENLNIHCGDAM R N K I R A 0 1 1 2 0 2 1 0 1 2 4 1 0 0 0 0 2 0 0 0 0 0 17 1 2049.1219 F5H5R8;P18440 F5H5R8 79 95 NAT1 Arylamine N-acetyltransferase 1 yes no 3 0.00014661 42.813 By MS/MS 1 1.1191 0.99994 NaN 1 Median NaN NaN NaN 0 0 Median 1.1191 0.99994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7763600 3573000 4190600 0 0 0 7763600 3573000 4190600 0 0 0 0 0 0 0 0 0 0 0 0 25707 1038 27074 136661 137405 137405 1 NKLEASIENLRR YDVTTEQALTYPEVKNKLEASIENLRRVTD EVKNKLEASIENLRRVTDKVLNSIISSLDL K N K R R V 1 2 2 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 2 1441.8001 E7EWC2;F5H7S7;Q13576 E7EWC2 992 1003 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 3 0.0010671 46.592 By MS/MS 1 0.84114 0.85822 NaN 1 Median 0.84114 0.85822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7010900 3736800 3274100 7010900 3736800 3274100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25708 901 27075 136662 137406;137407 137406 2 NKLEGLEDALQK ADAEQRGEMALKDAKNKLEGLEDALQKAKQ DAKNKLEGLEDALQKAKQDLARLLKEYQEL K N K Q K A 1 0 1 1 0 1 2 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1356.7249 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 425 436 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 5.9536E-06 117.14 By MS/MS By MS/MS 1 3 0.072575 0.07522 101.43 3 Median NaN NaN NaN 0 0 Median 0.072575 0.069145 NaN 1 1 Median 0.15934 0.17716 121.15 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23416000 22336000 1080000 0 0 0 5179400 4815600 363760 18237000 17521000 716190 0 0 0 0 0 0 0 0 0 + 25709 741;748;766 27076 136663;136664;136665;136666 137408;137409;137410;137411 137408 4 NKLNDLEDALQQAK SDAEQRGENALKDAKNKLNDLEDALQQAKE KNKLNDLEDALQQAKEDLARLLRDYQELMN K N K A K E 2 0 2 2 0 2 1 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1598.8264 P04264;CON__P04264 P04264 442 455 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 4.1711E-115 242.45 By MS/MS By MS/MS By MS/MS By MS/MS 8 1 13 4 0.087114 0.10048 82.713 23 Median 0.17126 0.17593 76.103 7 7 Median 0.33307 0.29443 NaN 1 1 Median 0.08224 0.092202 62.452 12 11 Median NaN NaN NaN 0 0 Median 0.024374 0.026573 45.763 3 3 Median NaN NaN NaN 0 0 Median 240130000 222970000 17154000 68114000 60832000 7282200 931750 693830 237920 110620000 102420000 8199300 0 0 0 60464000 59029000 1435000 0 0 0 + 25710 1848 27077 136667;136668;136669;136670;136671;136672;136673;136674;136675;136676;136677;136678;136679;136680;136681;136682;136683;136684;136685;136686;136687;136688;136689;136690;136691;136692 137412;137413;137414;137415;137416;137417;137418;137419;137420;137421;137422;137423;137424;137425;137426;137427;137428;137429;137430;137431;137432;137433;137434;137435;137436;137437 137420 26 NKLNDLEDALQQAKEDLAR SDAEQRGENALKDAKNKLNDLEDALQQAKE DLEDALQQAKEDLARLLRDYQELMNTKLAL K N K A R L 3 1 2 3 0 2 2 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 19 2 2183.1182 P04264;CON__P04264 P04264 442 460 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3;4 1.1213E-47 164.56 By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 3 0.035256 0.036127 95.743 7 Median 0.03595 0.039596 58.649 3 3 Median 0.0088929 0.0094743 94.706 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.066488 0.076595 NaN 1 1 Median NaN NaN NaN 0 0 Median 318280000 310950000 7325500 53707000 52471000 1235300 151580000 150790000 798890 0 0 0 6236200 6236200 0 106750000 101460000 5291200 0 0 0 + 25711 1848 27078 136693;136694;136695;136696;136697;136698;136699;136700;136701;136702;136703;136704;136705;136706 137438;137439;137440;137441;137442;137443;137444;137445;137446;137447;137448;137449;137450;137451;137452;137453;137454 137447 17 NKLNDLEEALQQAK ADAEQRGEHALKDARNKLNDLEEALQQAKE RNKLNDLEEALQQAKEDLARLLRDYQELMN R N K A K E 2 0 2 1 0 2 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1612.842 CON__P35908;CON__P35908v2;P35908 CON__P35908 446 459 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.0726E-33 169.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 1 8 6 1 0.11035 0.11269 128.29 19 Median 0.072649 0.077872 107.09 4 4 Median NaN NaN NaN 0 0 Median 0.18153 0.1962 158.8 8 8 Median NaN NaN NaN 0 0 Median 0.064683 0.071995 83.109 6 6 Median 0.16177 0.13878 NaN 1 1 Median 139400000 125200000 14196000 41935000 40197000 1738800 4777000 4777000 0 53826000 43215000 10611000 0 0 0 33502000 31906000 1595400 5358400 5107500 250880 + 25712 764;765 27079 136707;136708;136709;136710;136711;136712;136713;136714;136715;136716;136717;136718;136719;136720;136721;136722;136723;136724;136725;136726;136727;136728 137455;137456;137457;137458;137459;137460;137461;137462;137463;137464;137465;137466;137467;137468;137469;137470;137471;137472;137473;137474;137475;137476 137455 22 NKLNDLEEALQQAKEDLAR ADAEQRGEHALKDARNKLNDLEEALQQAKE DLEEALQQAKEDLARLLRDYQELMNVKLAL R N K A R L 3 1 2 2 0 2 3 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 19 2 2197.1339 CON__P35908;CON__P35908v2;P35908 CON__P35908 446 464 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 2.7167E-182 272.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 1 1 2 1 0.045755 0.04938 110.62 14 Median 0.39503 0.42764 114.69 3 3 Plateau 0.04191 0.045851 64.72 6 6 Median 0.28025 0.31934 NaN 1 1 Median 0.042796 0.04555 NaN 1 1 Median 0.058267 0.067651 120.64 2 2 Median 0.010417 0.0097038 NaN 1 1 Median 147450000 139100000 8347800 16363000 12911000 3451900 45281000 43440000 1841000 3012600 2431900 580760 10504000 10144000 360460 35422000 33612000 1810700 36866000 36563000 302940 + 25713 764;765 27080 136729;136730;136731;136732;136733;136734;136735;136736;136737;136738;136739;136740;136741;136742 137477;137478;137479;137480;137481;137482;137483;137484;137485;137486;137487;137488;137489;137490;137491;137492 137483 16 NKLQQLPADFGR DFCGLTHLVKLDLSKNKLQQLPADFGRLVN LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K N K G R L 1 1 1 1 0 2 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 12 1 1385.7415 Q96AG4 Q96AG4 72 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 2.9157E-05 110.14 By MS/MS By matching By MS/MS 3 2 4 1.3271 1.2524 22.146 9 Median 1.1677 1.1767 12.657 3 1 Plateau 1.7918 1.6554 24.152 2 0 Median NaN NaN NaN 0 0 Median 1.4726 1.346 15.47 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40341000 17853000 22488000 34041000 15341000 18700000 1334000 534740 799220 0 0 0 4965200 1976900 2988300 0 0 0 0 0 0 25714 3600 27081 136743;136744;136745;136746;136747;136748;136749;136750;136751 137493;137494;137495;137496;137497;137498;137499;137500 137495 8 NKLTGEVVALKK EKIGEGTYGVVYKARNKLTGEVVALKKIRL KARNKLTGEVVALKKIRLDTETEGVPSTAI R N K K K I 1 0 1 0 0 0 1 1 0 0 2 3 0 0 0 0 1 0 0 2 0 0 12 2 1298.7922 G3V5T9;P24941;E7ESI2;G3V317 G3V5T9 23 34 CDK2 Cyclin-dependent kinase 2 yes no 3 0.00017071 76.326 By MS/MS By MS/MS By MS/MS 1 1 1 0.99011 1.0343 4.2874 3 Median 0.99011 1.0343 NaN 1 0 Median 0.98466 0.97803 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.124 1.064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18450000 9015900 9434200 11663000 5640900 6022100 2085600 1278000 807540 0 0 0 4701500 2097000 2604500 0 0 0 0 0 0 25715 1120 27082 136752;136753;136754 137501;137502;137503;137504;137505 137501 5 NKLVQTAELTK VGCKPEQQMMYAGSKNKLVQTAELTKVFEI AGSKNKLVQTAELTKVFEIRNTEDLTEEWL K N K T K V 1 0 1 0 0 1 1 0 0 0 2 2 0 0 0 0 2 0 0 1 0 0 11 1 1243.7136 P60983;G3V4P8 P60983 109 119 GMFB Glia maturation factor beta yes no 2 0.025982 46.001 By MS/MS By matching 1 1 1.3577 1.2812 28.117 2 Median 1.0431 1.0502 NaN 1 0 Median 1.7672 1.563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3136400 1420200 1716100 2563500 1218600 1344800 572910 201620 371290 0 0 0 0 0 0 0 0 0 0 0 0 25716 2534 27083 136755;136756 137506 137506 1 NKNAAQELATLLLSLPAPASVQQQSK LESCFAVGPIIEKERNKNAAQELATLLLSL LLSLPAPASVQQQSKSLLASLHTSRSAYHS R N K S K S 5 0 2 0 0 4 1 0 0 0 5 2 0 0 2 3 1 0 0 1 0 0 26 1 2719.4868 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2501 2526 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.076478 6.1606 By MS/MS 2 0.76037 0.81424 4.715 2 Median 0.76037 0.81424 4.715 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1208800 645610 563170 1208800 645610 563170 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25717 3089 27084 136757;136758 137507 137507 1 NKNPAPPIDAVEQILPTLVR GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL PPIDAVEQILPTLVRLLHHDDPEVLADTCW R N K V R L 2 1 2 1 0 1 1 0 0 2 2 1 0 0 4 0 1 0 0 2 0 0 20 1 2184.2267 P52292 P52292 239 258 KPNA2 Importin subunit alpha-1 yes yes 3 1.1262E-07 58.997 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 3 1 1 0.69235 0.69524 13.028 11 Median 0.7064 0.71292 3.5506 2 0 Median 0.63791 0.58227 NaN 1 0 Median 0.67826 0.75853 8.0066 3 0 Median 0.74634 0.71674 9.3975 3 1 Plateau 0.79787 0.8287 NaN 1 0 Median 0.61404 0.55077 NaN 1 0 Median 28092000 15413000 12679000 7701900 4227900 3474000 6550100 3592400 2957700 5990800 3328700 2662200 4976400 2686600 2289800 2191700 1163400 1028300 681280 413920 267350 25718 2448 27085 136759;136760;136761;136762;136763;136764;136765;136766;136767;136768;136769 137508;137509;137510;137511;137512;137513;137514;137515;137516;137517;137518 137513 11 NKPEWFFKK KAKGIRHEVININLKNKPEWFFKKNPFGLV ININLKNKPEWFFKKNPFGLVPVLENSQGQ K N K K K N 0 0 1 0 0 0 1 0 0 0 0 3 0 2 1 0 0 1 0 0 0 0 9 2 1222.6499 P78417;Q5TA02;Q5TA01 P78417 58 66 GSTO1 Glutathione S-transferase omega-1 yes no 3 0.0040415 46.457 By MS/MS By MS/MS 1 1 0.88175 0.89637 5.6374 2 Median 0.81561 0.86134 NaN 1 0 Median 0.95326 0.93282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9732300 6018900 3713400 7326200 4644900 2681300 2406000 1374000 1032100 0 0 0 0 0 0 0 0 0 0 0 0 25719 2646 27086 136770;136771 137519;137520;137521 137521 3 NKPGPNIESGNEDDDASFK DEFLQSRKGQKKNQKNKPGPNIESGNEDDD PNIESGNEDDDASFKIKTVAQKKAEKKERE K N K F K I 1 0 3 3 0 0 2 2 0 1 0 2 0 1 2 2 0 0 0 0 0 0 19 1 2032.8974 A0A087WUT6;O60841 A0A087WUT6 206 224 EIF5B Eukaryotic translation initiation factor 5B yes no 3 1.2666E-18 114.34 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.82638 0.85101 13.16 5 Median 0.82638 0.7808 NaN 1 0 Median 1.0672 0.99004 NaN 1 0 Median 0.81818 0.94814 NaN 1 0 Median 0.82429 0.78354 11.683 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69279000 36933000 32346000 26290000 14206000 12084000 9437900 4195500 5242300 13444000 7375700 6068300 20107000 11156000 8951300 0 0 0 0 0 0 25720 35 27087 136772;136773;136774;136775;136776 137522;137523;137524;137525;137526;137527;137528;137529 137523 8 NKPILHTDLDVK LKNLGHWLGMITLAKNKPILHTDLDVKSLL LAKNKPILHTDLDVKSLLLEAYVKGQQELL K N K V K S 0 0 1 2 0 0 0 0 1 1 2 2 0 0 1 0 1 0 0 1 0 0 12 1 1391.7773 A5YKK6 A5YKK6 1207 1218 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.0008765 47.915 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.81241 0.89434 14.35 5 Median 0.81241 0.79256 NaN 1 0 Median 1.0594 1.0185 NaN 1 0 Median 0.80131 0.9252 NaN 1 0 Median 0.9523 0.89434 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77777 0.70374 NaN 1 0 Median 23231000 12007000 11224000 7361100 4125900 3235300 6714300 3360700 3353600 5409400 2398400 3011000 2763800 1497600 1266300 0 0 0 982680 624910 357770 25721 503 27088 136777;136778;136779;136780;136781 137530;137531;137532;137533;137534 137533 5 NKPIVNIDPQTAELNHLK TLNTLRYADRARKIKNKPIVNIDPQTAELN IVNIDPQTAELNHLKQQVQQLQVLLLQAHG K N K L K Q 1 0 3 1 0 1 1 0 1 2 2 2 0 0 2 0 1 0 0 1 0 0 18 1 2043.1113 O95239 O95239 338 355 KIF4A Chromosome-associated kinesin KIF4A yes yes 3;4 1.3958E-15 111.78 By MS/MS By MS/MS 2 1 0.59271 0.68954 39.343 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61914 0.72339 6.7777 2 1 Median 0.38613 0.36781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79030000 49329000 29702000 0 0 0 0 0 0 68195000 41224000 26970000 10836000 8104100 2731800 0 0 0 0 0 0 25722 1757 27089 136782;136783;136784 137535;137536;137537;137538 137537 4 NKPQQNLQEDLPTAVEPLMEVTK NDFFNSFTTVLHKQRNKPQQNLQEDLPTAV EDLPTAVEPLMEVTKQEPPKPLRFLPGVLI R N K T K Q 1 0 2 1 0 3 3 0 0 0 3 2 1 0 3 0 2 0 0 2 0 0 23 1 2621.3371 Q92576;E7ER40 Q92576 1411 1433 PHF3 PHD finger protein 3 yes no 3 1.8742E-06 58.457 By MS/MS 1 0.5366 0.62102 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5366 0.62102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10728000 7462600 3265800 0 0 0 0 0 0 10728000 7462600 3265800 0 0 0 0 0 0 0 0 0 25723 3539 27090 136785 137539 137539 1 NKPQVPVPGSDISETQVER FTIQEYFAKRMAALKNKPQVPVPGSDISET VPVPGSDISETQVERKRGKKRNKEATGKDV K N K E R K 0 1 1 1 0 2 2 1 0 1 0 1 0 0 3 2 1 0 0 3 0 0 19 1 2079.0596 Q96BK5 Q96BK5 191 209 PINX1 PIN2/TERF1-interacting telomerase inhibitor 1 yes yes 3 3.1059E-07 64.83 By MS/MS 1 0.59631 0.67781 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59631 0.67781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5830400 3571400 2259000 0 0 0 0 0 0 5830400 3571400 2259000 0 0 0 0 0 0 0 0 0 25724 3607 27091 136786 137540 137540 1 NKQEMAFYSLPEFEEWK RFLEEFITPIVKVSKNKQEMAFYSLPEFEE QEMAFYSLPEFEEWKSSTPNHKKWKVKYYK K N K W K S 1 0 1 0 0 1 4 0 0 0 1 2 1 2 1 1 0 1 1 0 0 0 17 1 2174.9983 P11388 P11388 583 599 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.018583 20.091 By matching By matching By MS/MS 1 1 1 1.3327 1.3185 22.969 3 Median 1.5882 1.669 NaN 1 0 Median 1.3327 1.3185 NaN 1 0 Median 0.91592 1.0543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3849600 1866300 1983300 433680 173860 259820 131200 46179 85026 3284700 1646200 1638400 0 0 0 0 0 0 0 0 0 25725 1963 27092 136787;136788;136789 137541;137542 137542 2 NKQEVMISDLEER LAEEEEKAKNLAKIRNKQEVMISDLEERLK IRNKQEVMISDLEERLKKEEKTRQELEKAK R N K E R L 0 1 1 1 0 1 3 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 13 1 1589.7719 P35580 P35580 1030 1042 MYH10 Myosin-10 yes yes 2;3 3.422E-09 170.52 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 0.98804 0.98285 34.7 9 Median 1.094 1.09 14.628 2 0 Median 1.2443 1.1662 7.6469 2 0 Median 0.56394 0.6759 7.0147 2 0 Median 0.67212 0.59263 NaN 1 0 Median 0.66701 0.76916 59.468 2 0 Median NaN NaN NaN 0 0 Median 171450000 86742000 84709000 98359000 47031000 51328000 25758000 11419000 14339000 28522000 17300000 11221000 768600 459710 308880 18045000 10533000 7511600 0 0 0 25726 2245 27093 136790;136791;136792;136793;136794;136795;136796;136797;136798 137543;137544;137545;137546;137547;137548;137549;137550;137551;137552;137553;137554 137543 12 NKQPTPVNIR ______________________________ ______________________________ K N K I R A 0 1 2 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 0 1 0 0 10 1 1165.6568 X6R700;Q9Y3Y2;A0A087X1B7 X6R700 4 13 CHTOP Chromatin target of PRMT1 protein yes no 2 0.0078414 63.565 By matching By MS/MS By MS/MS 1 2 1 0.72544 0.74474 16.155 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71147 0.73035 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61531 0.65646 24.823 2 0 Median 0.83569 0.75941 NaN 1 0 Median 9490000 5579300 3910800 0 0 0 0 0 0 1753800 981780 772050 0 0 0 6742500 4040800 2701700 993670 556650 437020 25727 4435 27094 136799;136800;136801;136802 137555;137556;137557 137555 3 NKQPVTDPLLTPVEK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK NKQPVTDPLLTPVEKASLRAMSLEEAKMRR K N K E K A 0 0 1 1 0 1 1 0 0 0 2 2 0 0 3 0 2 0 0 2 0 0 15 1 1677.9301 Q9BVJ6;X6RJY0 Q9BVJ6 195 209 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes no 3 9.2481E-05 63.29 By MS/MS 1 0.71008 0.7951 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71008 0.7951 NaN 1 1 Median NaN NaN NaN 0 0 Median 10019000 5287400 4731400 0 0 0 0 0 0 0 0 0 0 0 0 10019000 5287400 4731400 0 0 0 25728 3855 27095 136803 137558 137558 1 NKQQQQQQQQQQQQQQHSAVLALSPSQSPR RKQQKEHTNLMAEYRNKQQQQQQQQQQQQQ QHSAVLALSPSQSPRLLTKLPGQLLPGHGL R N K P R L 2 1 1 0 0 15 0 0 1 0 2 1 0 0 2 4 0 0 0 1 0 0 30 1 3483.7316 O14686 O14686 3597 3626 KMT2D Histone-lysine N-methyltransferase 2D yes yes 4 5.6708E-09 39.036 By MS/MS 1 0.59399 0.6881 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59399 0.6881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7118100 4599800 2518200 0 0 0 0 0 0 7118100 4599800 2518200 0 0 0 0 0 0 0 0 0 25729 1490 27096 136804 137559;137560 137560 2 NKQTYSTEPNNLK QWMVVRNCSSFLIKRNKQTYSTEPNNLKAR KRNKQTYSTEPNNLKARNSFRYNGLIHRKT R N K L K A 0 0 3 0 0 1 1 0 0 0 1 2 0 0 1 1 2 0 1 0 0 0 13 1 1535.758 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 21 33 RPL28 60S ribosomal protein L28 yes no 2;3 0.0065707 54.608 By matching By MS/MS By matching 2 2 1 0.96742 0.90064 8.873 5 Median 0.90424 0.91444 2.1506 2 0 Median 0.9884 0.87389 3.0256 2 0 Median NaN NaN NaN 0 0 Median 1.1998 1.078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8520700 4304300 4216400 3785900 1913200 1872700 4400600 2239200 2161400 0 0 0 334230 151930 182310 0 0 0 0 0 0 25730 1191 27097 136805;136806;136807;136808;136809 137561;137562 137562 2 NKSEDSTKDDIDLDALAAEIEGAGAAK ______________________________ LDALAAEIEGAGAAKEQEPQKSKGKKKKEK K N K A K E 6 0 1 5 0 0 3 2 0 2 2 3 0 0 0 2 1 0 0 0 0 0 27 2 2746.3145 A0A087WUT6;O60841 A0A087WUT6 7 33 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.014545 16.801 By MS/MS By MS/MS By matching 1 1 1 1.1702 1.2651 21.29 3 Median 1.1702 1.2812 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73285 0.88063 NaN 1 0 Median 1.2482 1.2651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5724400 2709100 3015300 3820200 1690700 2129400 0 0 0 1778100 961410 816690 126180 56962 69218 0 0 0 0 0 0 25731 35 27098 136810;136811;136812 137563;137564 137564 2 NKSNEDQSMGNWQIK AVEEVDEEGKFVRLRNKSNEDQSMGNWQIK NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP R N K I K R 0 0 3 1 0 2 1 1 0 1 0 2 1 0 0 2 0 1 0 0 0 0 15 1 1777.8053 P02545;A0A0C4DGC5 P02545 456 470 LMNA Prelamin-A/C;Lamin-A/C no no 3 0.048345 13.865 By MS/MS 1 1.027 1.0962 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.027 1.0962 NaN 1 0 Median NaN NaN NaN 0 0 Median 10101000 4876200 5225200 0 0 0 0 0 0 0 0 0 0 0 0 10101000 4876200 5225200 0 0 0 25732 1834 27099 136813 137565 137565 1 NKSNEDQSMGNWQIKR AVEEVDEEGKFVRLRNKSNEDQSMGNWQIK KSNEDQSMGNWQIKRQNGDDPLLTYRFPPK R N K K R Q 0 1 3 1 0 2 1 1 0 1 0 2 1 0 0 2 0 1 0 0 0 0 16 2 1933.9065 P02545;A0A0C4DGC5 P02545 456 471 LMNA Prelamin-A/C;Lamin-A/C no no 3;4 4.4574E-05 57.328 By MS/MS 3 1.293 1.5237 55.608 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.293 1.5237 55.608 3 0 Median NaN NaN NaN 0 0 Median 17536000 8302400 9233200 0 0 0 0 0 0 0 0 0 0 0 0 17536000 8302400 9233200 0 0 0 25733 1834 27100 136814;136815;136816 137566;137567;137568;137569;137570 137568 4 NKSTESLQANVQR KVARTIGISVDPRRRNKSTESLQANVQRLK RRNKSTESLQANVQRLKEYRSKLILFPRKP R N K Q R L 1 1 2 0 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 13 1 1473.7536 P26373;J3QSB4 P26373 104 116 RPL13 60S ribosomal protein L13 yes no 3 0.0003358 60.161 By MS/MS By MS/MS 1 1 1.0277 1.0197 1.997 2 Median NaN NaN NaN 0 0 Median 1.0775 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9802 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median 4112700 1912700 2200000 0 0 0 2363800 1047400 1316300 0 0 0 0 0 0 1749000 865270 883710 0 0 0 25734 2144 27101 136817;136818 137571;137572;137573 137573 3 NKTEDLEATSEHFK VERILARGENLEHLRNKTEDLEATSEHFKT RNKTEDLEATSEHFKTTSQKVARKFWWKNV R N K F K T 1 0 1 1 0 0 3 0 1 0 1 2 0 1 0 1 2 0 0 0 0 0 14 1 1647.774 Q9BV40;C9JXZ5 Q9BV40 46 59 VAMP8 Vesicle-associated membrane protein 8 yes no 3 0.00028498 56.65 By MS/MS By MS/MS By MS/MS 1 1 1 1.0717 0.92951 23.304 3 Median 0.99258 0.92951 NaN 1 0 Median 1.0717 0.92904 NaN 1 0 Median 1.3651 1.3914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13766000 6291000 7475400 3015400 1334800 1680500 6780700 3353000 3427700 3970400 1603200 2367200 0 0 0 0 0 0 0 0 0 25735 3845 27102 136819;136820;136821 137574;137575;137576;137577 137577 4 NKTEYEEAQDAIVK FTNSKLTSLNEEYTKNKTEYEEAQDAIVKE KNKTEYEEAQDAIVKEIVNISSGYVEPMQT K N K V K E 2 0 1 1 0 1 3 0 0 1 0 2 0 0 0 0 1 0 1 1 0 0 14 1 1636.7944 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02 P43246 566 579 MSH2 DNA mismatch repair protein Msh2 yes no 2;3 1.4501E-15 182.35 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 3 1 1 0.95692 1.0077 26.482 10 Median 0.91539 0.96024 6.0201 2 1 Median 1.5454 1.4408 NaN 1 0 Median 0.8431 0.96181 17.933 2 0 Median 1.297 1.2355 34.124 3 0 Median 0.629 0.72718 NaN 1 0 Median 1.1213 1.0134 NaN 1 0 Median 86050000 42232000 43818000 17761000 8950800 8810100 3817300 1713300 2104000 36388000 18598000 17789000 23913000 10804000 13109000 2788900 1654800 1134200 1382300 511230 871100 25736 2324 27103 136822;136823;136824;136825;136826;136827;136828;136829;136830;136831 137578;137579;137580;137581;137582;137583;137584;137585;137586;137587;137588 137587 11 NKTGAAPIIDVVR LWTLVSEQTRVNAAKNKTGAAPIIDVVRSV AKNKTGAAPIIDVVRSVS____________ K N K V R S 2 1 1 1 0 0 0 1 0 2 0 1 0 0 1 0 1 0 0 2 0 0 13 1 1352.7776 E9PLL6;P46776;E9PJD9;E9PLX7 E9PLL6 93 105 RPL27A 60S ribosomal protein L27a yes no 2;3 0.00024151 87.298 By MS/MS By MS/MS By MS/MS 2 2 2 1.0747 0.99279 17.49 6 Median 0.94454 0.93044 5.1913 2 0 Median 1.088 0.96006 8.7237 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1585 1.3073 3.6488 2 0 Median NaN NaN NaN 0 0 Median 56288000 27204000 29084000 31390000 15791000 15599000 8249200 3977500 4271700 0 0 0 0 0 0 16649000 7434800 9214100 0 0 0 25737 961 27104 136832;136833;136834;136835;136836;136837 137589;137590;137591;137592;137593;137594;137595;137596;137597;137598 137591 10 NKVEQLKEELSSK MKQMEVYRSHSKFMKNKVEQLKEELSSKEA MKNKVEQLKEELSSKEAQWEELKKKAAGLQ K N K S K E 0 0 1 0 0 1 3 0 0 0 2 3 0 0 0 2 0 0 0 1 0 0 13 2 1530.8253 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 438 450 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 1.8655E-05 87.083 By matching By MS/MS By MS/MS 1 1 1 0.84227 1.0121 16.959 3 Median 0.79346 0.83174 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84227 1.0121 NaN 1 0 Median 1.1385 1.1659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15228000 7561100 7667400 4818500 2441600 2376900 0 0 0 4682000 2622000 2060000 5728000 2497500 3230500 0 0 0 0 0 0 25738 3311 27105 136838;136839;136840 137599;137600;137601 137601 3 NKVMMVALGR DIRNAWKHSRMFFGKNKVMMVALGRSPSDE MFFGKNKVMMVALGRSPSDEYKDNLHQVSK K N K G R S 1 1 1 0 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 2 0 0 10 1 1117.61 Q9UKD2 Q9UKD2 70 79 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0078414 63.565 By MS/MS 1 1.1575 1.2228 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1575 1.2228 NaN 1 0 Median NaN NaN NaN 0 0 Median 3089000 1497000 1592000 0 0 0 0 0 0 0 0 0 0 0 0 3089000 1497000 1592000 0 0 0 25739 4308 27106 136841 137602 137602 1 NKVSHIDVITAEMAK ELLESADKFYGVKFRNKVSHIDVITAEMAK NKVSHIDVITAEMAKDFVEDDTTHG_____ R N K A K D 2 0 1 1 0 0 1 0 1 2 0 2 1 0 0 1 1 0 0 2 0 0 15 1 1654.8712 Q9UQE7 Q9UQE7 1193 1207 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.00010715 53.981 By MS/MS By MS/MS 1 1 0.94519 1.0525 5.187 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94645 1.0918 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.94392 1.0146 NaN 1 0 Median NaN NaN NaN 0 0 Median 15128000 8742400 6386000 0 0 0 0 0 0 8432400 4364700 4067700 0 0 0 6696000 4377700 2318300 0 0 0 25740 4362 27107 136842;136843 137603;137604;137605 137604 3 NKWFFQK REAKVKFEERYKTGKNKWFFQKLRF_____ EERYKTGKNKWFFQKLRF____________ K N K Q K L 0 0 1 0 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 7 1 996.51814 P61353;K7ELC7 P61353 127 133 RPL27 60S ribosomal protein L27 yes no 2 0.00041863 153.67 By MS/MS By matching By matching By matching 1 2 1 2 1.1912 1.1176 17.245 6 Median 1.1358 1.1283 NaN 1 0 Median 1.2369 1.083 3.1001 2 0 Median 1.1046 1.1053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3511 1.4893 15.481 2 0 Median NaN NaN NaN 0 0 Median 55926000 25688000 30238000 41489000 19514000 21975000 8277700 3566800 4711000 3385000 1647000 1738100 0 0 0 2774100 960470 1813600 0 0 0 25741 2557 27108 136844;136845;136846;136847;136848;136849 137606 137606 1 NKYEDEINK DSELKNMQDMVEDYRNKYEDEINKRTNAEN MVEDYRNKYEDEINKRTNAENEFVTIKKDV R N K N K R 0 0 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1151.5459 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__H-INV:HIT000016045;P04264;CON__P04264;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668;CON__Q5XKE5;Q5XKE5;CON__Q9H552 P04264 268 276 KRT8;KRT1;KRT6A;KRT5;KRT6C;KRT79 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 79 no no 2 0.031384 53.968 By MS/MS By matching By matching 3 2 1 0.98747 0.95431 18.981 6 Median NaN NaN NaN 0 0 Median 0.97777 0.91975 21.494 3 0 Median 1.0298 1.0901 4.8003 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95603 0.85207 NaN 1 0 Median 6947000 3255900 3691100 0 0 0 4487700 2108300 2379400 1283000 570620 712340 0 0 0 0 0 0 1176400 576970 599400 + 25742 1848;750;757;741;748;766;792;786 27109 136850;136851;136852;136853;136854;136855 137607 137607 1 NKYEDEINKR DSELKNMQDMVEDYRNKYEDEINKRTNAEN VEDYRNKYEDEINKRTNAENEFVTIKKDVD R N K K R T 0 1 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 2 1307.647 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045;P04264;CON__P04264;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668 P04264 268 277 KRT8;KRT1;KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2;3 3.2563E-73 222.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 12 7 10 7 9 0.14502 0.15316 153.44 48 Median 0.096524 0.10361 138.76 8 4 Median 0.13397 0.13718 143.51 10 6 Median 0.80637 0.93555 113.54 7 0 Median 0.038163 0.040747 204.71 8 4 Median 0.086676 0.10103 98.685 7 1 Median 0.35343 0.33035 151.38 8 0 Median 674980000 551350000 123630000 77170000 67075000 10095000 229560000 180390000 49179000 52936000 31270000 21665000 134120000 122170000 11945000 94802000 81664000 13139000 86390000 68783000 17607000 + 25743 1848;750;757;741;748;766 27110 136856;136857;136858;136859;136860;136861;136862;136863;136864;136865;136866;136867;136868;136869;136870;136871;136872;136873;136874;136875;136876;136877;136878;136879;136880;136881;136882;136883;136884;136885;136886;136887;136888;136889;136890;136891;136892;136893;136894;136895;136896;136897;136898;136899;136900;136901;136902;136903;136904;136905;136906;136907;136908;136909 137608;137609;137610;137611;137612;137613;137614;137615;137616;137617;137618;137619;137620;137621;137622;137623;137624;137625;137626;137627;137628;137629;137630;137631;137632;137633;137634;137635;137636;137637;137638;137639;137640;137641;137642;137643;137644;137645;137646;137647;137648;137649;137650;137651;137652;137653;137654;137655;137656;137657;137658;137659;137660;137661;137662;137663;137664;137665;137666;137667;137668;137669;137670;137671;137672;137673;137674;137675 137632 68 NKYETEINITK AKVRNHYNEEMSNLRNKYETEINITKTTIK SNLRNKYETEINITKTTIKEISMQKEDDSK R N K T K T 0 0 2 0 0 0 2 0 0 2 0 2 0 0 0 0 2 0 1 0 0 0 11 1 1351.6983 P15924 P15924 1208 1218 DSP Desmoplakin yes yes 2;3 6.8274E-05 136.02 By MS/MS By MS/MS By MS/MS 1 2 3 1.4167 1.2879 16.678 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0776 1.1659 14.07 2 1 Median 1.6471 1.4699 13.102 3 1 Median 45831000 20823000 25008000 0 0 0 0 0 0 0 0 0 0 0 0 29660000 14129000 15531000 16171000 6693600 9476900 25744 2021 27111 136910;136911;136912;136913;136914;136915 137676;137677;137678;137679;137680;137681;137682;137683;137684 137679 9 NKYQELINDIAR TGLKKLTELGTVDPKNKYQELINDIARDIR DPKNKYQELINDIARDIRNQRRYRQRRKAE K N K A R D 1 1 2 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1475.7732 P46940;H0YLE8 P46940 1476 1487 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 4.4342E-18 142.43 By MS/MS By matching 4 1 0.90635 0.92296 48.694 4 Median 0.7508 0.77548 41.085 3 1 Median NaN NaN NaN 0 0 Median 1.269 1.5082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25581000 12742000 12838000 24164000 12168000 11996000 0 0 0 1416400 574720 841650 0 0 0 0 0 0 0 0 0 25745 2350 27112 136916;136917;136918;136919;136920 137685;137686;137687 137687 3 NLAENISR RDFNVGDYIQAVLDRNLAENISRVLYPNDN IQAVLDRNLAENISRVLYPNDNFFEGKELR R N L S R V 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 915.47739 P06737;E9PK47;P11216;P11217 P06737 271 278 PYGL;PYGB;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form no no 2 0.0024981 107.9 By MS/MS By MS/MS By matching 2 1 1 1.2419 1.0737 16.835 3 Median 1.0804 1.0435 NaN 1 1 Median 1.2419 1.0737 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6487 1.4154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24695000 10670000 14025000 6789000 2990700 3798300 17013000 7327000 9685700 0 0 0 893410 352800 540600 0 0 0 0 0 0 25746 1874;1956;1957 27113 136921;136922;136923;136924 137688;137689;137690;137691 137691 4 NLAHPVIQNFSYETFQQK TQKLRNDLLNIIREKNLAHPVIQNFSYETF HPVIQNFSYETFQQKMLRFLESHLDDAEPY K N L Q K M 1 0 2 0 0 3 1 0 1 1 1 1 0 2 1 1 1 0 1 1 0 0 18 0 2163.0749 H3BR06;Q15554;H3BTA7;U3KQ35;J3KSJ9 H3BR06 124 141 TERF2 Telomeric repeat-binding factor 2 yes no 3 1.9306E-11 99.055 By MS/MS By MS/MS 3 3 0.77758 0.7714 21.823 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76948 0.77193 5.2037 3 0 Plateau 0.91028 0.77921 33.984 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27658000 14671000 12986000 0 0 0 0 0 0 25763000 13741000 12022000 1895100 930670 964460 0 0 0 0 0 0 25747 1226 27114 136925;136926;136927;136928;136929;136930 137692;137693;137694;137695 137693 4 NLALDINELKPGNLLK DLKLNLKFEIEVLCKNLALDINELKPGNLL LALDINELKPGNLLKDKDRLKNLDEQLSAP K N L L K D 1 0 3 1 0 0 1 1 0 1 5 2 0 0 1 0 0 0 0 0 0 0 16 1 1764.0145 A5YKK6 A5YKK6 1289 1304 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.063363 10.658 By matching By MS/MS By matching 1 1 1 1.0043 0.88105 7.5044 3 Plateau 0.8133 0.84289 NaN 1 0 Median 1.0075 0.97572 NaN 1 0 Median 0.76832 0.88105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4078500 2093500 1985000 918420 551620 366800 2537700 1197100 1340600 622370 344740 277630 0 0 0 0 0 0 0 0 0 25748 503 27115 136931;136932;136933 137696 137696 1 NLALSGFR VLVIGAGGLGCELLKNLALSGFRQIHVIDM LGCELLKNLALSGFRQIHVIDMDTIDVSNL K N L F R Q 1 1 1 0 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 876.48175 Q8TBC4;F8WF86 Q8TBC4 87 94 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 2 0.0079875 64.757 By MS/MS By matching 1 1 1.139 1.1134 11.192 2 Median 1.045 1.0287 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2416 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5277100 2870100 2407000 4723600 2606200 2117400 0 0 0 553440 263870 289580 0 0 0 0 0 0 0 0 0 25749 3460 27116 136934;136935 137697 137697 1 NLAMEATYINHNFSQQCLR NEPPQDEGNSFNSPRNLAMEATYINHNFSQ EATYINHNFSQQCLRMGKERYNFPNPNPFV R N L L R M 2 1 3 0 1 2 1 0 1 1 2 0 1 1 0 1 1 0 1 0 0 0 19 0 2309.0681 O15371 O15371 311 329 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 3 3.2604E-07 59.434 By MS/MS By matching 1 1 1.0908 1.0009 13.623 2 Median 0.93124 0.90895 NaN 1 0 Median 1.2776 1.1021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5985700 2929900 3055800 4526200 2328000 2198200 1459500 601820 857660 0 0 0 0 0 0 0 0 0 0 0 0 25750 1540 27117 136936;136937 137698 137698 1 NLAMGVNLTSMSK LTLRSEGFDTYRCDRNLAMGVNLTSMSKIL DRNLAMGVNLTSMSKILKCAGNEDIITLRA R N L S K I 1 0 2 0 0 0 0 1 0 0 2 1 2 0 0 2 1 0 0 1 0 0 13 0 1364.6792 P12004 P12004 65 77 PCNA Proliferating cell nuclear antigen yes yes 2 4.0688E-08 149.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 9 4 4 6 1 1.1472 1.0497 15.131 28 Median 1.104 1.0044 14.58 4 0 Median 1.2035 1.0423 14.98 9 0 Median 1.1088 1.0684 7.1753 4 2 Median 1.4125 1.1742 16.393 4 0 Median 0.95881 0.99579 15.403 6 1 Median 1.175 0.96885 NaN 1 0 Median 878110000 404830000 473270000 529440000 246210000 283240000 136920000 60198000 76721000 105230000 48440000 56791000 32336000 13867000 18469000 72072000 35218000 36854000 2109700 906300 1203300 25751 1974 27118;27119;27120 136938;136939;136940;136941;136942;136943;136944;136945;136946;136947;136948;136949;136950;136951;136952;136953;136954;136955;136956;136957;136958;136959;136960;136961;136962;136963;136964;136965 137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719;137720;137721;137722;137723;137724;137725;137726;137727;137728;137729;137730;137731;137732;137733;137734 137710 752;753 36 NLANTVTEEILEK PDPEVMAKVKVLFVRNLANTVTEEILEKAF VRNLANTVTEEILEKAFSQFGKLERVKKLK R N L E K A 1 0 2 0 0 0 3 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1472.7722 B7Z645;O60506 O60506 344 356 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2 9.7404E-07 124.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 4 2 1.1144 1.0032 11.437 17 Median 1.0693 1.0032 NaN 1 1 Median 1.1248 0.94799 2.363 2 0 Median 1.1987 1.2343 10.082 4 0 Median 1.1384 0.94629 3.4506 4 0 Linear 1.1142 1.1604 4.4939 4 0 Linear 1.154 0.94641 7.6158 2 0 Median 178900000 81232000 97669000 12422000 6088700 6333100 14844000 6695400 8148300 74681000 33603000 41078000 22898000 10555000 12343000 42851000 19281000 23570000 11205000 5008600 6196800 25752 1619;634 27121 136966;136967;136968;136969;136970;136971;136972;136973;136974;136975;136976;136977;136978;136979;136980;136981;136982 137735;137736;137737;137738;137739;137740;137741;137742;137743;137744;137745;137746;137747;137748;137749;137750;137751;137752;137753;137754;137755;137756;137757 137737 23 NLAQLNDIHQQYK KMFEVKRREQLLALKNLAQLNDIHQQYKIL LKNLAQLNDIHQQYKILDVMLKGLFKVLED K N L Y K I 1 0 2 1 0 3 0 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 13 0 1583.8056 Q9H6E4;B0QY51 Q9H6E4 52 64 CCDC134 Coiled-coil domain-containing protein 134 yes no 2;3 1.5916E-06 111.91 By MS/MS By matching By MS/MS 2 1 1 3.263 2.971 48.917 4 Linear 2.8002 2.5898 41.533 2 2 Median 1.2009 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7422 1.4427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80646000 18594000 62051000 76256000 16568000 59688000 1977100 1165500 811590 0 0 0 2412600 861070 1551500 0 0 0 0 0 0 25753 3973 27122 136983;136984;136985;136986 137758;137759;137760 137758 3 NLATTVTEEILEK PDPEVMAKVKVLFVRNLATTVTEEILEKSF VRNLATTVTEEILEKSFSEFGKLERVKKLK R N L E K S 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 3 0 0 1 0 0 13 0 1459.777 O43390;B4DT28 O43390 347 359 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 4.4307E-07 135.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 5 7 1.014 0.96959 18.84 25 Median 1.6757 1.6219 41.894 2 0 Median 1.1283 0.98822 8.4453 3 0 Median 0.9646 0.9553 4.7445 4 0 Median 1.1982 1.029 10.078 4 0 Linear 1.0092 1.0025 2.5462 5 0 Linear 1.0633 0.88626 7.159 7 0 Median 471160000 220920000 250230000 9233500 2060600 7172900 62963000 28746000 34217000 155000000 74436000 80568000 5488100 2554200 2933900 153100000 74601000 78504000 85362000 38525000 46837000 25754 1568 27123 136987;136988;136989;136990;136991;136992;136993;136994;136995;136996;136997;136998;136999;137000;137001;137002;137003;137004;137005;137006;137007;137008;137009;137010;137011 137761;137762;137763;137764;137765;137766;137767;137768;137769;137770;137771;137772;137773;137774;137775;137776;137777;137778;137779;137780;137781;137782;137783;137784;137785;137786;137787;137788;137789;137790;137791;137792;137793;137794 137777 34 NLCSDDTPMVR RVSSAVKAELRQYFRNLCSDDTPMVRRAAA QYFRNLCSDDTPMVRRAAASKLGEFAKVLE R N L V R R 0 1 1 2 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 11 0 1306.5646 P30153;C9J9C1 P30153 172 182 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.00018232 96.331 By MS/MS By MS/MS 1 2 1.1649 0.84111 9.2563 3 Plateau 0.84246 0.84111 NaN 1 0 Median 1.0616 0.91002 11.403 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11775000 5588000 6186800 2711700 1447700 1263900 9063100 4140200 4922900 0 0 0 0 0 0 0 0 0 0 0 0 25755 2190 27124 137012;137013;137014 137795;137796;137797;137798;137799 137799 5 NLDAQYEMAR EESYKTLKQQEEVFRNLDAQYEMARSQTHT EEVFRNLDAQYEMARSQTHTQRGMGLGFTS R N L A R S 2 1 1 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1209.5448 Q7L4I2 Q7L4I2 402 411 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes yes 2 0.00058327 95.502 By MS/MS 1 0.69861 0.71662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69861 0.71662 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5751600 3107100 2644500 0 0 0 0 0 0 5751600 3107100 2644500 0 0 0 0 0 0 0 0 0 25756 3222 27125 137015 137800 137800 1 NLDAVHDITVAYPHNIPQSEK TTGFTFVVDRLREGKNLDAVHDITVAYPHN DITVAYPHNIPQSEKHLLQGDFPREIHFHV K N L E K H 2 0 2 2 0 1 1 0 2 2 1 1 0 0 2 1 1 0 1 2 0 0 21 0 2360.1761 Q6UWP7 Q6UWP7 250 270 LCLAT1 Lysocardiolipin acyltransferase 1 yes yes 3 1.327E-12 81.665 By MS/MS By matching 1 1 0.71475 0.66915 40.123 2 Median 0.88594 0.88866 NaN 1 0 Median 0.57664 0.50386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20557000 9924800 10633000 18096000 8510400 9585500 2461500 1414400 1047100 0 0 0 0 0 0 0 0 0 0 0 0 25757 3187 27126 137016;137017 137801 137801 1 NLDDGIDDER QDRITRYQGVNLYVKNLDDGIDDERLRKEF NLYVKNLDDGIDDERLRKEFSPFGTITSAK K N L E R L 0 1 1 4 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1160.4946 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YAP2 P11940 300 309 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 0.00033784 120.12 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 4 1 3 1 1 1.085 1.0106 32.391 12 Median 1.1133 1.0583 1.2507 2 0 Median 1.1038 0.95227 57.548 4 0 Median 1.0717 1.1241 NaN 1 0 Median 1.1049 0.95178 18.101 3 0 Median 0.94695 0.98314 NaN 1 0 Median 1.0117 0.8316 NaN 1 0 Median 74535000 35848000 38687000 19140000 9152200 9988200 37210000 17325000 19885000 4984000 2312400 2671600 6629100 3043800 3585300 5935700 3755700 2179900 635880 259170 376720 25758 1973 27127 137018;137019;137020;137021;137022;137023;137024;137025;137026;137027;137028;137029 137802;137803;137804;137805;137806;137807;137808;137809;137810;137811 137810 10 NLDDGIDDERLR QDRITRYQGVNLYVKNLDDGIDDERLRKEF YVKNLDDGIDDERLRKEFSPFGTITSAKVM K N L L R K 0 2 1 4 0 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 12 1 1429.6797 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YAP2 P11940 300 311 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2 1.813E-14 145.99 By MS/MS 2 0.93402 0.93875 9.7597 2 Median 0.93402 0.93875 9.7597 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18166000 8714600 9451400 18166000 8714600 9451400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25759 1973 27128 137030;137031 137812;137813 137812 2 NLDDTIDDEK QERISRYQGVNLYIKNLDDTIDDEKLRKEF NLYIKNLDDTIDDEKLRKEFSPFGSITSAK K N L E K L 0 0 1 4 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1176.5146 B1ANR0;Q13310;P0CB38;H0Y5F5;H0YEU6 B1ANR0 300 309 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like no no 2 0.00033774 85.744 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.0389 0.90113 9.9071 5 Median 1.0463 1.0044 NaN 1 0 Median 1.1166 0.96018 15.683 2 0 Median 0.80953 0.86113 NaN 1 0 Median 1.0389 0.90113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18973000 8997600 9975300 3610900 1594800 2016000 11387000 5455100 5931400 1749600 932790 816760 2225900 1014800 1211100 0 0 0 0 0 0 25760 576;1151 27129 137032;137033;137034;137035;137036 137814;137815;137816;137817;137818;137819 137817 6 NLDDTIDDEKLR QERISRYQGVNLYIKNLDDTIDDEKLRKEF YIKNLDDTIDDEKLRKEFSPFGSITSAKVM K N L L R K 0 1 1 4 0 0 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 1 1445.6998 B1ANR0;Q13310;P0CB38;H0Y5F5;H0YEU6 B1ANR0 300 311 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like no no 2 0.0036314 88.681 By MS/MS 1 1.1083 1.1313 NaN 1 Median 1.1083 1.1313 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787200 962030 825140 1787200 962030 825140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25761 576;1151 27130 137037 137820 137820 1 NLDDTIDDEKLRK QERISRYQGVNLYIKNLDDTIDDEKLRKEF IKNLDDTIDDEKLRKEFSPFGSITSAKVML K N L R K E 0 1 1 4 0 0 1 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 13 2 1573.7948 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 300 312 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 4 0.0093536 42.789 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666300 0 1666300 1666300 0 1666300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25762 576;1151 27131 137038 137821 137821 1 NLDENGLDLLSK TFPKWKPGSLASHVKNLDENGLDLLSKMLI HVKNLDENGLDLLSKMLIYDPAKRISGKMA K N L S K M 0 0 2 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1329.6776 P06493;A0A024QZP7 P06493 255 266 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 3.958E-06 112.36 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0693 0.94631 11.594 4 Median 1.0864 1.0087 NaN 1 0 Median 1.0442 0.87696 NaN 1 0 Median 1.1623 1.1205 NaN 1 0 Median 1.0524 0.88778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50090000 22391000 27699000 9561900 4749000 4812900 6398500 2978100 3420400 31765000 13568000 18197000 2364900 1096000 1268900 0 0 0 0 0 0 25763 1871 27132 137039;137040;137041;137042 137822;137823;137824;137825 137825 4 NLDFGIDMDSR HGVTFGYQGQKPLFKNLDFGIDMDSRICIV PLFKNLDFGIDMDSRICIVGPNGVGKSTLL K N L S R I 0 1 1 3 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 0 0 0 11 0 1281.566 Q8NE71;H0YGW7 Q8NE71 643 653 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0009873 66.435 By matching By matching By MS/MS 1 1 2 1.0047 0.89953 24.393 4 Median NaN NaN NaN 0 0 Median 0.74131 0.65466 NaN 1 0 Median 1.0567 1.1312 NaN 1 0 Median 1.0648 0.89953 16.43 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5779500 2999500 2780000 0 0 0 695000 351070 343930 2436800 1272100 1164600 2647700 1376300 1271400 0 0 0 0 0 0 25764 3427 27133 137043;137044;137045;137046 137826 137826 1724 1 NLDFQDVLDK CHGAGRALSRAKSRRNLDFQDVLDKLADMG AKSRRNLDFQDVLDKLADMGIAIRVASPKL R N L D K L 0 0 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1205.5928 Q9Y3I0 Q9Y3I0 442 451 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00092911 70.056 By MS/MS By matching By matching 2 1 1 1.1576 1.0549 3.5219 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98925 1.0232 1.7238 2 0 Median 1.252 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2897 1.0927 NaN 1 0 Median 28547000 14342000 14205000 0 0 0 0 0 0 25251000 12925000 12326000 3116900 1288700 1828200 0 0 0 179270 128300 50970 25765 4430 27134 137047;137048;137049;137050 137827;137828 137828 2 NLDGISHAPNAVK YGVQWHPEKAPYEWKNLDGISHAPNAVKTA WKNLDGISHAPNAVKTAFYLAEFFVNEARK K N L V K T 2 0 2 1 0 0 0 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1334.6943 Q92820 Q92820 254 266 GGH Gamma-glutamyl hydrolase yes yes 2;3 9.0305E-07 100.72 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 3 0.99931 0.96133 39.78 14 Median 0.7374 0.68752 27.369 4 1 Median 1.9956 1.6739 16.838 3 0 Median 0.86848 0.8874 11.226 4 0 Median 1.6899 1.4273 16.353 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62016000 29875000 32141000 27943000 15660000 12283000 7871100 2350100 5521000 16094000 8161800 7932700 10107000 3702900 6404100 0 0 0 0 0 0 25766 3560 27135 137051;137052;137053;137054;137055;137056;137057;137058;137059;137060;137061;137062;137063;137064;137065 137829;137830;137831;137832;137833;137834;137835;137836;137837;137838;137839;137840;137841;137842;137843 137841 15 NLDIERPTYTNLNR AFMVDNEAIYDICRRNLDIERPTYTNLNRL RNLDIERPTYTNLNRLISQIVSSITASLRF R N L N R L 0 2 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 1 1717.8747 Q9BQE3;F5H5D3;F8VVB9;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 P68363 216 229 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 1.5341E-97 270.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 12 9 8 13 10 0.9923 0.96237 33.578 66 Median 0.84928 0.90272 31.923 15 3 Median 0.98258 0.8821 13.609 12 2 Median 0.934 1.0179 6.7599 9 2 Median 1.0253 0.95635 18.16 8 0 Median 1.6891 1.8508 11.005 12 0 Median 1.0989 0.96903 12.305 10 0 Median 7880500000 3841800000 4038700000 3920300000 1986600000 1933700000 1340800000 656040000 684790000 1039100000 506880000 532190000 882600000 417730000 464880000 448200000 158510000 289690000 249460000 116050000 133410000 25767 2633;3212;1034 27136 137066;137067;137068;137069;137070;137071;137072;137073;137074;137075;137076;137077;137078;137079;137080;137081;137082;137083;137084;137085;137086;137087;137088;137089;137090;137091;137092;137093;137094;137095;137096;137097;137098;137099;137100;137101;137102;137103;137104;137105;137106;137107;137108;137109;137110;137111;137112;137113;137114;137115;137116;137117;137118;137119;137120;137121;137122;137123;137124;137125;137126;137127;137128;137129;137130;137131;137132 137844;137845;137846;137847;137848;137849;137850;137851;137852;137853;137854;137855;137856;137857;137858;137859;137860;137861;137862;137863;137864;137865;137866;137867;137868;137869;137870;137871;137872;137873;137874;137875;137876;137877;137878;137879;137880;137881;137882;137883;137884;137885;137886;137887;137888;137889;137890;137891;137892;137893;137894;137895;137896;137897;137898;137899;137900;137901;137902;137903;137904;137905;137906;137907;137908;137909;137910;137911;137912;137913;137914;137915;137916;137917;137918;137919;137920;137921;137922;137923;137924;137925;137926;137927;137928;137929;137930;137931;137932;137933;137934 137885 91 NLDKEYLPIGGLAEFCK VLPSVRKAEAQIAAKNLDKEYLPIGGLAEF DKEYLPIGGLAEFCKASAELALGENSEVLK K N L C K A 1 0 1 1 1 0 2 2 0 1 3 2 0 1 1 0 0 0 1 0 0 0 17 1 1965.987 P00505 P00505 91 107 GOT2 Aspartate aminotransferase, mitochondrial yes yes 3 0.02795 16.123 By MS/MS 1 1.4068 1.2721 NaN 1 Median NaN NaN NaN 0 0 Median 1.4068 1.2721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3923700 1641800 2281900 0 0 0 3923700 1641800 2281900 0 0 0 0 0 0 0 0 0 0 0 0 25768 1823 27137 137133 137935 137935 1 NLDLAVLELMQSSVDNTK FYSLFSETINTELLKNLDLAVLELMQSSVD LAVLELMQSSVDNTKMVSAVLNGMLDQSFR K N L T K M 1 0 2 2 0 1 1 0 0 0 4 1 1 0 0 2 1 0 0 2 0 0 18 0 1989.0089 P78527 P78527 1574 1591 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.3175E-08 91.475 By matching By MS/MS By MS/MS By matching 1 2 3 1 1.1412 1.0536 12.018 7 Median 1.0592 1.0468 NaN 1 0 Median 1.3262 1.1747 15.381 2 0 Median 1.0594 1.1691 15.395 3 0 Median 1.1412 1.0331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34007000 13850000 20157000 2173900 1059700 1114200 28886000 11369000 17517000 2842700 1376900 1465800 104640 44128 60508 0 0 0 0 0 0 25769 2647 27138;27139 137134;137135;137136;137137;137138;137139;137140 137936;137937 137937 1331 2 NLDLDSIIAEVK SVTDTNVILSMDNSRNLDLDSIIAEVKAQY NSRNLDLDSIIAEVKAQYEEIAQRSKEEAE R N L V K A 1 0 1 2 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1328.7187 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;H0YI76;H0YIN9;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__Q5XKE5;Q5XKE5 CON__P35908 348 359 KRT6A;KRT5;KRT6C;KRT2;KRT79 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 79 no no 2 6.8673E-06 110.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 3 1 1 2 0.0045105 0.0048574 122.45 11 Median 0.0074805 0.0070814 175.25 4 4 Median 0.0032461 0.0028699 26.318 3 3 Median 0.015723 0.016638 77.658 3 3 Median NaN NaN NaN 0 0 Median 0.0046346 0.0048574 NaN 1 1 Median NaN NaN NaN 0 0 Median 789550000 788640000 909300 151620000 151410000 217160 540050000 539670000 376150 20836000 20597000 239000 2498500 2498500 0 32578000 32501000 76995 41964000 41964000 0 + 25770 764;765;757;741;748;766;786 27140 137141;137142;137143;137144;137145;137146;137147;137148;137149;137150;137151;137152;137153;137154;137155;137156;137157 137938;137939;137940;137941;137942;137943;137944;137945;137946;137947;137948;137949;137950;137951;137952;137953;137954;137955;137956 137941 19 NLDLSWSELKK ALCKALQIFCRGTERNLDLSWSELKKEVTL GTERNLDLSWSELKKEVTLAVENELQGSVT R N L K K E 0 0 1 1 0 0 1 0 0 0 3 2 0 0 0 2 0 1 0 0 0 0 11 1 1331.7085 Q12769;G3V198;E9PR16 Q12769 486 496 NUP160 Nuclear pore complex protein Nup160 yes no 2;3 0.00025926 77.662 By matching By matching By MS/MS By MS/MS By matching By matching 2 1 4 2 1 1 0.97479 0.99107 20.622 11 Median 0.96766 1.0071 31.615 2 0 Median 0.83878 0.71515 NaN 1 0 Median 0.90759 1.0401 16.083 4 0 Median 1.2194 1.1616 28.521 2 0 Median 0.86878 1.0206 NaN 1 0 Median 1.0511 0.99107 NaN 1 0 Median 73813000 38577000 35235000 38078000 20870000 17208000 2990900 1558500 1432400 26802000 13339000 13463000 1371500 652750 718780 1664500 939870 724620 2906100 1216700 1689300 25771 2756 27141 137158;137159;137160;137161;137162;137163;137164;137165;137166;137167;137168 137957;137958;137959;137960;137961 137960 5 NLDNAAEAAEQFK KKAYRKLALKWHPDKNLDNAAEAAEQFKLI DKNLDNAAEAAEQFKLIQAAYDVLSDPQER K N L F K L 4 0 2 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 13 0 1419.663 Q5F1R6 Q5F1R6 35 47 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.040448 25.938 By matching By MS/MS 1 3 0.91123 0.84435 8.5426 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82326 0.90726 NaN 1 0 Median 0.94203 0.8364 7.6864 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6832700 3547500 3285200 0 0 0 0 0 0 4123300 2306800 1816500 2709400 1240700 1468700 0 0 0 0 0 0 25772 3046 27142 137169;137170;137171;137172 137962 137962 1 NLDPDVFNQIVK LKQIEPSLYPKLFQKNLDPDVFNQIVKILH FQKNLDPDVFNQIVKILHDFYIEKEKPLLI K N L V K I 0 0 2 2 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 12 0 1400.73 Q9H6T3 Q9H6T3 585 596 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 0.032927 46.462 By MS/MS 1 0.94639 0.88969 NaN 1 Median 0.94639 0.88969 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5052700 2894700 2158000 5052700 2894700 2158000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25773 3978 27143 137173 137963 137963 1 NLDQEQLSQVLDAMFER RCRLQEACKDILLFKNLDQEQLSQVLDAMF DQEQLSQVLDAMFERIVKADEHVIDQGDDG K N L E R I 1 1 1 2 0 3 2 0 0 0 3 0 1 1 0 1 0 0 0 1 0 0 17 0 2034.9681 P13861;H7C1L0 P13861 142 158 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit yes no 2 2.1794E-05 72.958 By matching By MS/MS By matching 1 1 1 0.87437 0.87355 5.3067 3 Median NaN NaN NaN 0 0 Median 1.0096 0.87395 NaN 1 0 Median 0.87437 0.87355 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79217 0.79702 NaN 1 0 Median NaN NaN NaN 0 0 Median 8318900 4157100 4161800 0 0 0 1818500 860400 958100 6224100 3149600 3074500 0 0 0 276270 147100 129170 0 0 0 25774 1998 27144 137174;137175;137176 137964;137965 137964 2 NLDSEKEKELER MREDLFKQYIEKIAKNLDSEKEKELERQAR IAKNLDSEKEKELERQARIEASLREREREV K N L E R Q 0 1 1 1 0 0 4 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 12 2 1488.742 O14776;G3V220 O14776 850 861 TCERG1 Transcription elongation regulator 1 yes no 3 0.010163 67.456 By MS/MS 2 3.7339 4.2547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.7339 4.2547 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28918000 5808600 23110000 0 0 0 0 0 0 28918000 5808600 23110000 0 0 0 0 0 0 0 0 0 25775 1494 27145 137177;137178 137966;137967 137966 2 NLDVQLLDTKR KKLENEVEQRHTLTRNLDVQLLDTKRQLDT TLTRNLDVQLLDTKRQLDTETNLHLNTKEL R N L K R Q 0 1 1 2 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 1 1313.7303 P12270 P12270 868 878 TPR Nucleoprotein TPR yes yes 2;3 3.4723E-30 211.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 4 4 1 4 1.061 1.1543 39.011 22 Median 1.2573 1.2865 24.779 4 0 Median 1.0785 1.0035 75.084 5 0 Median 0.96467 1.1738 4.4816 4 0 Linear 1.2646 1.1991 15.489 4 0 Median 1.0437 1.1824 NaN 1 0 Median 1.1242 1.0105 23.618 4 0 Median 146550000 68127000 78428000 33758000 13907000 19851000 17219000 7539800 9678800 81255000 40281000 40974000 4395700 1831600 2564100 2882700 1385800 1496900 7044400 3181100 3863200 25776 1978 27146 137179;137180;137181;137182;137183;137184;137185;137186;137187;137188;137189;137190;137191;137192;137193;137194;137195;137196;137197;137198;137199;137200 137968;137969;137970;137971;137972;137973;137974;137975;137976;137977;137978;137979;137980;137981;137982;137983;137984;137985;137986;137987;137988;137989;137990;137991;137992 137970 24 NLDWFPR YTGPESYVAQMIKNKNLDWFPRMRAMSLVS VAQMIKNKNLDWFPRMRAMSLVSNEGEGEQ K N L P R M 0 1 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 7 0 946.4661 Q14571;A0A3B3ITM1;A0A3B3ITQ4;B7ZMI3;Q14573;A0A3B3IRP0;A0A3B3IU13;A0A3B3IU05;A0A3B3ITQ1;A0A3B3ITU8;A0A3B3IU04;A0A3F2YNW8;Q14643 Q14573 2598 2604 ITPR2;ITPR1;ITPR3 Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 1 no no 2 0.025249 54.525 By MS/MS By matching By matching 1 1 1 0.84098 0.94697 15.06 3 Median 0.791 0.80167 NaN 1 0 Median 1.2478 1.0828 NaN 1 0 Median 0.84098 0.94697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4254800 2570300 1684400 2729400 1776600 952810 442770 192660 250110 1082600 601070 481520 0 0 0 0 0 0 0 0 0 25777 2882;2883;414 27147 137201;137202;137203 137993 137993 1 NLDYVATSIHEAVTK LLPSGRINVSGLTTKNLDYVATSIHEAVTK NLDYVATSIHEAVTKIQ_____________ K N L T K I 2 0 1 1 0 0 1 0 1 1 1 1 0 0 0 1 2 0 1 2 0 0 15 0 1659.8468 P17174 P17174 397 411 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00014202 68.44 By MS/MS 1 0.62928 0.66569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62928 0.66569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5060400 3174800 1885700 0 0 0 0 0 0 5060400 3174800 1885700 0 0 0 0 0 0 0 0 0 25778 2038 27148 137204 137994 137994 1 NLEAMNPPLFLR TYRESIKDLADYASKNLEAMNPPLFLRFLN ASKNLEAMNPPLFLRFLNLLMNDAIFLLDE K N L L R F 1 1 2 0 0 0 1 0 0 0 3 0 1 1 2 0 0 0 0 0 0 0 12 0 1413.7439 B7Z7P0;Q14139 B7Z7P0 247 258 UBE4A Ubiquitin conjugation factor E4 A yes no 2 0.00050369 76.827 By MS/MS By matching 1 1 0.70886 0.66177 0.70809 2 Median 0.66278 0.65847 NaN 1 0 Median 0.75815 0.66509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2073500 1201900 871640 1764500 1029500 735040 308990 172390 136600 0 0 0 0 0 0 0 0 0 0 0 0 25779 637 27149 137205;137206 137995;137996 137995 2 NLEAQHKELEEK DSEAELQRRHEQMKKNLEAQHKELEEKRRQ MKKNLEAQHKELEEKRRQFEDEKANWEAQQ K N L E K R 1 0 1 0 0 1 4 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1466.7365 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 369 380 SEPT7;DKFZp586I031 Septin-7 yes no 3 0.0001935 69.864 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.95551 1.0101 11.249 5 Median 0.85237 0.8286 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95551 1.0101 NaN 1 0 Median 1.1772 1.1182 NaN 1 0 Median 0.89308 0.95261 NaN 1 0 Median 1.1662 1.0394 NaN 1 0 Median 7643100 3725900 3917200 779740 421720 358020 0 0 0 1322600 715950 606610 2706800 1241100 1465700 2055300 1014100 1041200 778750 332990 445760 25780 870 27150 137207;137208;137209;137210;137211 137997;137998;137999;138000 137998 4 NLEAVETLGSTSTICSDK TLTAKRMARKNCLVKNLEAVETLGSTSTIC AVETLGSTSTICSDKTGTLTQNRMTVAHMW K N L D K T 1 0 1 1 1 0 2 1 0 1 2 1 0 0 0 3 3 0 0 1 0 0 18 0 1923.9095 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1;Q13733;E9PRA5 P05023 360 377 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 2 5.4229E-06 70.412 By MS/MS 2 1.2306 1.0722 8.5904 2 Median NaN NaN NaN 0 0 Median 1.2306 1.0722 8.5904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3651000 1668900 1982100 0 0 0 3651000 1668900 1982100 0 0 0 0 0 0 0 0 0 0 0 0 25781 1857 27151 137212;137213 138001;138002 138001 2 NLEAYAANPHSFVFTR RSRHQKRARAQAQLRNLEAYAANPHSFVFT LEAYAANPHSFVFTRGCTGRNIRQLSLDVR R N L T R G 3 1 2 0 0 0 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 16 0 1835.8955 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 21 36 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2;3 4.5362E-06 74.46 By matching By MS/MS By matching 1 3 1 0.87362 0.93865 26.604 5 Median NaN NaN NaN 0 0 Median 0.57698 0.51433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94124 0.93944 6.9535 3 1 Plateau 1.1322 0.97105 NaN 1 0 Median 16806000 8203700 8602600 0 0 0 100580 53450 47131 0 0 0 0 0 0 15362000 7516100 7845500 1344100 634140 709970 25782 205 27152 137214;137215;137216;137217;137218 138003;138004;138005 138005 3 NLEEEAGVQDALNIR LESSVGDSRLPLVLRNLEEEAGVQDALNIR NLEEEAGVQDALNIREAISKAKATENGLVN R N L I R E 2 1 2 1 0 1 3 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 15 0 1669.8271 Q86TU7 Q86TU7 525 539 SETD3 Histone-lysine N-methyltransferase setd3 yes yes 2 0.00034792 56.225 By MS/MS 1 1.108 1.1017 NaN 1 Median 1.108 1.1017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962200 1380400 1581700 2962200 1380400 1581700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25783 3269 27153 137219 138006 138006 1 NLEEEEDGETK YGIGRCAKMAYELWRNLEEEEDGETKGRRP ELWRNLEEEEDGETKGRRPEIGHIFLLDRD R N L T K G 0 0 1 1 0 0 5 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 0 1291.5416 F5H008;A0A2R8YDQ0;Q9H267 F5H008 182 192 VPS33B Vacuolar protein sorting-associated protein 33B yes no 2 0.00016921 79.974 By MS/MS By MS/MS By MS/MS 1 1 1 1.0216 0.88208 15.52 3 Median 0.76103 0.73488 NaN 1 0 Median 1.0216 0.88208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1639 1.0006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5179300 2496600 2682700 2141500 1186700 954800 2272600 1005100 1267500 0 0 0 765130 304780 460350 0 0 0 0 0 0 25784 397 27154 137220;137221;137222 138007;138008;138009;138010 138008 4 NLEEGHSSTVAAHYNELQEVGLEK NKRKIALEDVPEKQKNLEEGHSSTVAAHYN VAAHYNELQEVGLEKRSQSRIFYLRNFNNW K N L E K R 2 0 2 0 0 1 5 2 2 0 3 1 0 0 0 2 1 0 1 2 0 0 24 0 2653.262 O43148 O43148 140 163 RNMT mRNA cap guanine-N7 methyltransferase yes yes 4 0.017992 14.408 By MS/MS 1 1.1589 1.1535 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1589 1.1535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6180500 2848600 3331900 0 0 0 0 0 0 6180500 2848600 3331900 0 0 0 0 0 0 0 0 0 25785 1554 27155 137223 138011 138011 1 NLEELEEK SETKTEELKPQVEEKNLEELEEKSTTPPPA KPQVEEKNLEELEEKSTTPPPAEPVSLPQE K N L E K S 0 0 1 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1002.487 Q9UN86 Q9UN86 217 224 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 0.0035902 91.318 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 1.1643 1.0533 21.545 6 Median 1.169 1.1218 9.0312 2 2 Median 0.97724 0.82008 NaN 1 1 Median 1.3748 1.4107 NaN 1 0 Median 1.0795 0.92363 18.708 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25112000 12361000 12751000 8587000 4292700 4294300 8664500 4749800 3914800 2994700 1101900 1892800 4865800 2216200 2649600 0 0 0 0 0 0 25786 4341 27156 137224;137225;137226;137227;137228;137229;137230 138012;138013;138014;138015;138016;138017 138017 6 NLEGYVGFANLPNQVYR ______________________________ EGYVGFANLPNQVYRKSVKRGFEFTLMVVG K N L Y R K 1 1 3 0 0 1 1 2 0 0 2 0 0 1 1 0 0 0 2 2 0 0 17 0 1952.9745 E7ES33;E7EPK1;Q16181;A0A0U1RRD1 E7ES33 6 22 SEPT7 Septin-7 yes no 2;3 6.805E-14 138.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 5 2 1 0.92464 0.84906 11.31 12 Median 0.825 0.81334 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84489 0.81755 4.6203 3 0 Median 1.0815 0.93129 7.1952 5 0 Median 0.6908 0.69479 4.7581 2 0 Median 1.0498 0.91793 NaN 1 0 Median 210800000 108740000 102060000 4561300 2503900 2057400 0 0 0 178060000 92394000 85661000 22837000 10817000 12020000 4969700 2829200 2140500 376190 197560 178630 25787 870 27157 137231;137232;137233;137234;137235;137236;137237;137238;137239;137240;137241;137242 138018;138019;138020;138021;138022;138023;138024;138025;138026;138027;138028;138029;138030 138020 13 NLEGYVGFANLPNQVYRK ______________________________ GYVGFANLPNQVYRKSVKRGFEFTLMVVGE K N L R K S 1 1 3 0 0 1 1 2 0 0 2 1 0 1 1 0 0 0 2 2 0 0 18 1 2081.0694 E7ES33;E7EPK1;Q16181;A0A0U1RRD1 E7ES33 6 23 SEPT7 Septin-7 yes no 3 0.014136 24.784 By MS/MS By matching 1 1 1.384 1.3033 15.621 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2148 1.167 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5768 1.4555 NaN 1 0 Median 2952300 1081700 1870600 0 0 0 0 0 0 0 0 0 2700800 978250 1722500 0 0 0 251530 103490 148040 25788 870 27158 137243;137244 138031 138031 0 NLEILQNQTDMK SSKMEFMTINGTTLRNLEILQNQTDMKTKG TLRNLEILQNQTDMKTKGSLLWVLDHTKTS R N L M K T 0 0 2 1 0 2 1 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 12 0 1445.7184 P20585;A0A590UJW0;A0A590UKC9 P20585 544 555 MSH3 DNA mismatch repair protein Msh3 yes no 2 2.6286E-22 164.97 By MS/MS By MS/MS 1 1 0.45116 0.43233 4.9263 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39099 0.41753 NaN 1 1 Median 0.52058 0.44766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16496000 11050000 5446400 0 0 0 0 0 0 12774000 8739500 4034400 3722100 2310000 1412100 0 0 0 0 0 0 25789 2080 27159 137245;137246 138032;138033 138032 2 NLEISIDTLMAK SVLKDGKPEMNKQIKNLEISIDTLMAKIKS QIKNLEISIDTLMAKIKSTMMTQEQIQKEY K N L A K I 1 0 1 1 0 0 1 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 12 0 1346.7116 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75 A0A0A0MRM8 873 884 MYO6 Unconventional myosin-VI yes no 2 0.00058433 74.162 By MS/MS 1 1.5163 1.2875 NaN 1 Median NaN NaN NaN 0 0 Median 1.5163 1.2875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6263700 763270 5500500 0 0 0 6263700 763270 5500500 0 0 0 0 0 0 0 0 0 0 0 0 25790 164 27160 137247 138034 138034 1 NLELLSVAR ENEAVAPEFTNRNPRNLELLSVARKERGWR TNRNPRNLELLSVARKERGWRTVFPSREFW R N L A R K 1 1 1 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1013.5869 Q9H0U6 Q9H0U6 55 63 MRPL18 39S ribosomal protein L18, mitochondrial yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2627 1.1314 17.195 4 Median 1.0432 1.0109 NaN 1 0 Median 1.5246 1.2662 NaN 1 0 Median 1.0457 1.0037 NaN 1 0 Median 1.7237 1.4209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21555000 10216000 11339000 12584000 6175800 6408000 1798400 668000 1130400 6471400 3112700 3358700 701780 259480 442300 0 0 0 0 0 0 25791 3930 27161 137248;137249;137250;137251 138035;138036;138037;138038;138039;138040 138036 6 NLENELELTK ASLQDTLEVLQSSYKNLENELELTKMDKMS QSSYKNLENELELTKMDKMSFVEKVNKMTA K N L T K M 0 0 2 0 0 0 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1201.619 P49454 P49454 2592 2601 CENPF Centromere protein F yes yes 2 0.00041922 75.294 By MS/MS By matching 1 1 0.88268 1.0021 9.3776 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.001 1.0708 NaN 1 0 Median 0.77835 0.93782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9848600 4925600 4923000 0 0 0 0 0 0 9507800 4738800 4769000 340800 186850 153950 0 0 0 0 0 0 25792 2383 27162 137252;137253 138041;138042 138041 2 NLEPALPGR RGASSGKKTAGPQQKNLEPALPGRWGGRSA AGPQQKNLEPALPGRWGGRSAENPPSGSVR K N L G R W 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 9 0 965.52943 Q15014;Q5JXX1;Q5JXX2;Q5JXX6 Q15014 50 58 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.00094593 89.142 By MS/MS By MS/MS 1 1 0.6809 0.61895 23.884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52768 0.52277 NaN 1 0 Median 0.87862 0.73283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9900700 5199900 4700800 0 0 0 0 0 0 5572400 3140200 2432100 4328300 2059700 2268600 0 0 0 0 0 0 25793 2912 27163 137254;137255 138043;138044;138045;138046 138046 4 NLEPEWAAAASEVK VWMVEFYAPWCGHCKNLEPEWAAAASEVKE KNLEPEWAAAASEVKEQTKGKVKLAAVDAT K N L V K E 4 0 1 0 0 0 3 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 14 0 1513.7413 Q15084 Q15084 195 208 PDIA6 Protein disulfide-isomerase A6 yes yes 2 0.00010931 82.171 By MS/MS By MS/MS By MS/MS 1 1 1 1.0066 0.93221 14.743 3 Median 1.0066 0.93221 NaN 1 0 Median 1.1234 0.95633 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82111 0.73211 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19195000 9365400 9829200 12775000 6260600 6514600 4838500 2275900 2562600 0 0 0 1581000 828930 752070 0 0 0 0 0 0 25794 2927 27164 137256;137257;137258 138047;138048;138049;138050 138047 4 NLEQQVNHSQQGHTNANAVLFSQVK SNVAHILQTLSAPTKNLEQQVNHSQQGHTN QGHTNANAVLFSQVKVTPETHMLQQQQQAQ K N L V K V 2 0 4 0 0 5 1 1 2 0 2 1 0 1 0 2 1 0 0 3 0 0 25 0 2790.3798 Q6ZW49 Q6ZW49 369 393 PAXIP1 PAX-interacting protein 1 yes yes 3;4 1.4204E-12 51.857 By MS/MS By MS/MS 2 1 0.91848 0.94305 6.5723 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90166 0.96253 2.8906 2 0 Median 1.0174 0.86382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34847000 17022000 17825000 0 0 0 0 0 0 32781000 16170000 16611000 2065200 851840 1213400 0 0 0 0 0 0 25795 3203 27165 137259;137260;137261 138051;138052;138053;138054;138055 138051 5 NLEQYNKLDQDLNEVK AIHKDLEDTEANKEKNLEQYNKLDQDLNEV LEQYNKLDQDLNEVKARVEELDRKYYEVKN K N L V K A 0 0 3 2 0 2 2 0 0 0 3 2 0 0 0 0 0 0 1 1 0 0 16 1 1961.9694 Q9UQE7 Q9UQE7 430 445 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 7.6871E-09 131.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 4 2 0.97063 1.0654 16.696 11 Median 1.1888 1.2496 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8366 0.98142 2.9275 2 0 Median 1.1937 1.1371 0.74866 2 1 Median 0.96149 1.0613 9.5874 4 0 Median 0.86168 0.85376 33.05 2 0 Median 194360000 97858000 96506000 6099500 2919500 3180000 0 0 0 102680000 54147000 48538000 4191400 1882100 2309300 79302000 37998000 41304000 2087200 911760 1175400 25796 4362 27166 137262;137263;137264;137265;137266;137267;137268;137269;137270;137271;137272 138056;138057;138058;138059;138060;138061;138062;138063;138064;138065;138066;138067 138059 12 NLESALR RKITRTSFLDDAFRKNLESALRFGNPLLVQ FLDDAFRKNLESALRFGNPLLVQDVESYDP K N L L R F 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 801.43447 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542;H0YJ21 Q14204 3622 3628 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.023226 71.949 By MS/MS By MS/MS 2 1 1.2637 1.3323 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2637 1.3323 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12301000 5883000 6418500 0 0 0 0 0 0 12301000 5883000 6418500 0 0 0 0 0 0 0 0 0 25797 2865 27167 137273;137274;137275 138068;138069;138070 138068 3 NLETLQQELGIEGENR QYVWFNIGSVDTFERNLETLQQELGIEGEN LETLQQELGIEGENRVPVVYIAESDGSFLL R N L N R V 0 1 2 0 0 2 4 2 0 1 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1841.9119 Q9Y4W6;K7EP56 Q9Y4W6 225 240 AFG3L2 AFG3-like protein 2 yes no 2 1.2628E-10 114.82 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.2951 1.1221 126.53 5 Median 0.23218 0.23054 175.01 2 1 Median 1.2951 1.1221 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6791 1.3922 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3851 1.146 NaN 1 0 Median 9326300 5174300 4152000 4820300 3347200 1473100 4170300 1684100 2486300 0 0 0 163080 65625 97457 0 0 0 172540 77390 95150 25798 4449 27168 137276;137277;137278;137279;137280 138071;138072;138073 138071 3 NLFAEIIEEHLANR VAGQLLPLAYNLLKRNLFAEIIEEHLANRS RNLFAEIIEEHLANRSQENIDQLAA_____ R N L N R S 2 1 2 0 0 0 3 0 1 2 2 0 0 1 0 0 0 0 0 0 0 0 14 0 1667.8631 Q9NWY4 Q9NWY4 323 336 C4orf27 UPF0609 protein C4orf27 yes yes 3 0.059478 11.44 By matching By MS/MS 1 1 1.1744 1.1403 11.771 2 Median NaN NaN NaN 0 0 Median 1.2093 1.0492 NaN 1 0 Median 1.1405 1.2393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3367800 1653300 1714500 0 0 0 830530 411300 419230 2537300 1242000 1295300 0 0 0 0 0 0 0 0 0 25799 4153 27169 137281;137282 138074 138074 1 NLFEQLVR ______________________________ TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ R N L V R R 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1017.5607 Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8VVE5;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VS54;F8VVY0;F8VXH1 Q9H0H5 10 17 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.044676 35.88 By matching By matching By matching By MS/MS By matching 1 3 2 2 1 1.2776 1.1925 9.2031 9 Median NaN NaN NaN 0 0 Median 1.4202 1.1977 NaN 1 0 Median 1.2776 1.2852 6.124 3 0 Median 1.4187 1.1618 1.4144 2 0 Median 1.2523 1.2687 9.4567 2 0 Median 1.139 1.002 NaN 1 0 Median 8347600 3795700 4551900 0 0 0 127610 47671 79937 6508800 3052800 3456000 239930 96331 143600 1172700 459760 712960 298600 139170 159420 25800 3926 27170 137283;137284;137285;137286;137287;137288;137289;137290;137291 138075 138075 1 NLFIGNLDHSVSEVELR CEEDLMPEDDQRATRNLFIGNLDHSVSEVE FIGNLDHSVSEVELRRAFEKYGIIEEVVIK R N L L R R 0 1 2 1 0 0 2 1 1 1 3 0 0 1 0 2 0 0 0 2 0 0 17 0 1940.9956 Q8NDT2 Q8NDT2 338 354 RBM15B Putative RNA-binding protein 15B yes yes 3 0.055362 9.7492 By MS/MS 2 0.77569 0.78478 26.678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77569 0.78478 26.678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4789900 2900900 1889000 0 0 0 0 0 0 4789900 2900900 1889000 0 0 0 0 0 0 0 0 0 25801 3424 27171 137292;137293 138076 138076 1 NLFLTGNQLAVLPAGAFAR RNLTEVPTDLPAYVRNLFLTGNQLAVLPAG TGNQLAVLPAGAFARRPPLAELAALNLSGS R N L A R R 4 1 2 0 0 1 0 2 0 0 4 0 0 2 1 0 1 0 0 1 0 0 19 0 1972.0894 Q13641 Q13641 95 113 TPBG Trophoblast glycoprotein yes yes 2 0.0021361 31.228 By MS/MS 1 0.82289 0.83381 NaN 1 Median 0.82289 0.83381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1654600 880990 773640 1654600 880990 773640 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25802 2834 27172 137294 138077 138077 1 NLFPSNLVVAAFR PVPKETVDSFLDLARNLFPSNLVVAAFRTY ARNLFPSNLVVAAFRTYATDYKVVTQNSSS R N L F R T 2 1 2 0 0 0 0 0 0 0 2 0 0 2 1 1 0 0 0 2 0 0 13 0 1446.7983 P43007 P43007 177 189 SLC1A4 Neutral amino acid transporter A yes yes 2 0.025504 44.309 By MS/MS By matching 2 1 0.9221 0.91787 26.607 3 Median 0.99713 0.99528 11.451 2 1 Median 0.73939 0.64164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1807500 876300 931180 1628300 772890 855440 179140 103410 75738 0 0 0 0 0 0 0 0 0 0 0 0 25803 2320 27173 137295;137296;137297 138078;138079 138079 2 NLFQLAR DLVSKWLGESEKLVKNLFQLARENKPSIIF GESEKLVKNLFQLARENKPSIIFIDEIDSL K N L A R E 1 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 860.48684 O75351 O75351 218 224 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 2 0.044246 43 By MS/MS By matching By matching By matching 1 1 2 1 1.1214 1.0169 16.483 5 Median 1.3167 1.3138 NaN 1 0 Median 1.3406 1.1693 NaN 1 0 Median 0.90804 0.93332 12.125 2 0 Median 1.1214 0.98155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6461200 2887600 3573600 2302200 869410 1432800 887720 352020 535700 2972200 1529300 1442900 299110 136870 162240 0 0 0 0 0 0 25804 1661 27174 137298;137299;137300;137301;137302 138080 138080 1 NLFQQYDR VYGFSALWKFIQQWKNLFQQYDRDRSGSIS KFIQQWKNLFQQYDRDRSGSISYTELQQAL K N L D R D 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1082.5145 Q9UBV8 Q9UBV8 188 195 PEF1 Peflin yes yes 2 0.0023142 132.29 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.3324 1.2011 12.142 6 Median 1.303 1.241 17.066 2 0 Median 1.4702 1.2327 20.389 2 0 Median 1.2701 1.238 NaN 1 0 Median 1.3862 1.1654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34151000 15462000 18689000 26188000 11955000 14234000 5537500 2519200 3018300 2074100 841780 1232300 350800 146430 204380 0 0 0 0 0 0 25805 4251 27175 137303;137304;137305;137306;137307;137308 138081;138082;138083;138084;138085;138086 138081 6 NLFSQTLSLGSQK ______________________________ LRNLFSQTLSLGSQKERLLDELTLEGVARY R N L Q K E 0 0 1 0 0 2 0 1 0 0 3 1 0 1 0 3 1 0 0 0 0 0 13 0 1421.7514 F8WF57;F8WDM4;C9JR33;C9J3U7;F8WCF4;C9JZQ0;B5MCS1;A0A0A0MRF5;E7EWX6;A0A087WYM3;Q8IXJ6 F8WF57 6 18 SIRT2 NAD-dependent protein deacetylase sirtuin-2 yes no 2 0.012278 51.927 By MS/MS 1 1.0561 1.0029 NaN 1 Median 1.0561 1.0029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2174000 1088100 1085900 2174000 1088100 1085900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25806 83 27176 137309 138087 138087 1 NLFWTSYDTNKK DLPNAHGLAVDWVSRNLFWTSYDTNKKQIN VSRNLFWTSYDTNKKQINVARLDGSFKNAV R N L K K Q 0 0 2 1 0 0 0 0 0 0 1 2 0 1 0 1 2 1 1 0 0 0 12 1 1515.7358 Q07954 Q07954 1671 1682 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 1.0444E-05 120.68 By MS/MS 1 0.87047 0.94858 NaN 1 Median 0.87047 0.94858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8468600 4485000 3983500 8468600 4485000 3983500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25807 2733 27177 137310 138088 138088 1 NLGALYR KACKVDSPTVTTTLKNLGALYRRQGKFEAA PTVTTTLKNLGALYRRQGKFEAAETLEEAA K N L Y R R 1 1 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 805.44464 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;H0YJU9;H0YJL0;H0YJT3;H0YG16;Q9NSK0 G5E9S8 467 473 KLC1;KLC4 Kinesin light chain 1;Kinesin light chain 4 no no 2 0.013989 75.311 By MS/MS By MS/MS By matching 1 1 2 1.302 1.1993 9.614 4 Median 1.2055 1.1819 NaN 1 0 Median 1.4062 1.2169 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2913 1.1263 15.283 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12607000 5730400 6876600 4084200 1972700 2111600 7380600 3276500 4104100 0 0 0 1142200 481190 660960 0 0 0 0 0 0 25808 896;4105 27178 137311;137312;137313;137314 138089;138090 138090 2 NLGESEIR DELKRLDEELEDAEKNLGESEIRDAMMAKA ELEDAEKNLGESEIRDAMMAKAEYLCRIGD K N L I R D 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 916.46141 Q15008;C9J0E9;C9J7B7 Q15008 94 101 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.0034335 96.492 By MS/MS By MS/MS 1 1 1.4609 1.4034 1.6816 2 Median NaN NaN NaN 0 0 Median 1.5888 1.3868 NaN 1 0 Median 1.3432 1.4202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9392600 3981600 5411000 0 0 0 8242700 3550800 4691900 1149900 430820 719060 0 0 0 0 0 0 0 0 0 25809 2911 27179 137315;137316 138091;138092 138092 2 NLGFSPEDREENVRR CYTLDGDNIRQGLNKNLGFSPEDREENVRR NLGFSPEDREENVRRIAEVAKLFADAGLVC K N L R R I 0 3 2 1 0 0 3 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 15 2 1816.8816 O43252 O43252 98 112 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3;4 0.00012089 60.157 By MS/MS By matching 2 2 1.0867 1.2062 33.927 4 Median 0.88371 0.95669 2.272 2 0 Median 1.4772 1.681 16.449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35163000 17351000 17812000 27174000 13711000 13463000 7988900 3640200 4348700 0 0 0 0 0 0 0 0 0 0 0 0 25810 1561 27180 137317;137318;137319;137320 138093;138094;138095 138095 3 NLGFSPGDREENIR CYSLDGDNVRHGLNRNLGFSPGDREENIRR RNLGFSPGDREENIRRIAEVAKLFADAGLV R N L I R R 0 2 2 1 0 0 2 2 0 1 1 0 0 1 1 1 0 0 0 0 0 0 14 1 1602.775 O95340 O95340 88 101 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 3.0957E-06 90.731 By MS/MS By MS/MS By matching 1 1 1 0.92801 0.84282 29.563 3 Median 0.96897 0.95466 NaN 1 0 Median 0.92801 0.84282 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58358 0.54376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21201000 9414400 11787000 8587600 4001600 4586000 11151000 4578200 6572900 0 0 0 1462700 834630 628030 0 0 0 0 0 0 25811 1765 27181 137321;137322;137323 138096;138097;138098;138099 138098 4 NLGFSPGDREENIRR CYSLDGDNVRHGLNRNLGFSPGDREENIRR NLGFSPGDREENIRRIAEVAKLFADAGLVC R N L R R I 0 3 2 1 0 0 2 2 0 1 1 0 0 1 1 1 0 0 0 0 0 0 15 2 1758.8761 O95340 O95340 88 102 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3;4 0.0040478 28.297 By MS/MS By matching 2 1 1.0401 1.1475 9.0182 3 Median 0.98912 1.0708 9.7851 2 0 Median 1.0401 1.1836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28068000 13314000 14754000 21508000 10067000 11441000 6560700 3247300 3313400 0 0 0 0 0 0 0 0 0 0 0 0 25812 1765 27182 137324;137325;137326 138100;138101;138102 138101 3 NLGFTAIPLHGQMSQSK CSTCNNTQRTALLLRNLGFTAIPLHGQMSQ GFTAIPLHGQMSQSKRLGSLNKFKAKARSI R N L S K R 1 0 1 0 0 2 0 2 1 1 2 1 1 1 1 2 1 0 0 0 0 0 17 0 1827.9302 Q9H0S4 Q9H0S4 285 301 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 3 0.00014454 41.412 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.67012 0.59445 31.009 5 Median NaN NaN NaN 0 0 Median 0.67012 0.59445 NaN 1 0 Median 0.99722 0.95812 NaN 1 0 Median 0.80058 0.70607 34.25 2 0 Median 0.49765 0.47414 NaN 1 0 Median NaN NaN NaN 0 0 Median 33968000 18076000 15892000 0 0 0 577880 315970 261910 23644000 11702000 11942000 2923400 1397500 1525900 6822700 4660500 2162200 0 0 0 25813 3928 27183 137327;137328;137329;137330;137331 138103;138104;138105 138104 3 NLGIESQDVMQQATNAILR LEIAKRLALRINAQKNLGIESQDVMQQATN ESQDVMQQATNAILRGGTILAPTVSAKTIA K N L L R G 2 1 2 1 0 3 1 1 0 2 2 0 1 0 0 1 1 0 0 1 0 0 19 0 2100.0634 Q7L014 Q7L014 864 882 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2;3 1.1324E-07 70.412 By matching By MS/MS 1 2 1.0478 1.0937 2.8919 3 Median 1.0856 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.01 1.0941 4.0897 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3922900 1892600 2030300 1112400 512660 599720 0 0 0 2810600 1380000 1430600 0 0 0 0 0 0 0 0 0 25814 3216 27184 137332;137333;137334 138106;138107;138108 138108 3 NLGIPIITVLGDSK QLAVAMGPNIKQHVKNLGIPIITVLGDSKN KNLGIPIITVLGDSKNNVRAAALATVNAWA K N L S K N 0 0 1 1 0 0 0 2 0 3 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1438.8395 Q14008 Q14008 941 954 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 8.1324E-07 97.734 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 4 2 1 2 1.0096 0.94676 18.734 12 Median 0.69169 0.66649 NaN 1 0 Median 0.89605 0.78916 4.7999 2 1 Median 0.98365 1.0689 6.5802 4 0 Median 1.0815 0.94676 4.4388 2 0 Median 1.2433 1.3152 NaN 1 0 Median 1.0211 0.87217 0.59022 2 0 Median 43763000 22182000 21581000 3524200 2668500 855650 4563600 2287400 2276200 26351000 12664000 13686000 6604900 3255300 3349700 2260400 1090600 1169900 459230 216050 243180 25815 2850 27185 137335;137336;137337;137338;137339;137340;137341;137342;137343;137344;137345;137346;137347 138109;138110;138111;138112;138113;138114;138115;138116;138117;138118;138119;138120;138121;138122;138123;138124 138123 16 NLGLEELGIELDPR CDVLLVCIGRRPFTKNLGLEELGIELDPRG KNLGLEELGIELDPRGRIPVNTRFQTKIPN K N L P R G 0 1 1 1 0 0 3 2 0 1 4 0 0 0 1 0 0 0 0 0 0 0 14 0 1566.8253 E9PEX6;P09622 E9PEX6 298 311 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.00018152 78.908 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.99436 0.95244 27.619 6 Median 0.96244 0.95556 NaN 1 0 Median 1.0524 0.88993 9.1377 2 0 Median 0.91911 0.94026 16.975 2 0 Median 1.9784 1.7473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47097000 21460000 25637000 1536500 728310 808160 36201000 16083000 20118000 9246300 4608900 4637400 113260 39902 73359 0 0 0 0 0 0 25816 915 27186 137348;137349;137350;137351;137352;137353 138125;138126;138127;138128;138129;138130;138131;138132;138133 138129 9 NLGLYVK HIKVDSGYRVHEELRNLGLYVKTRDGSDYE YRVHEELRNLGLYVKTRDGSDYEGWCWPGS R N L V K T 0 0 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 7 0 805.46979 E9PKU7;Q14697;F5H6X6 Q14697 485 491 GANAB Neutral alpha-glucosidase AB no no 2 0.022813 57.463 By MS/MS By MS/MS By matching 2 2 1 1.2052 1.1663 11.832 5 Median 1.1567 1.118 5.9757 2 0 Median 1.4471 1.2419 1.3115 2 1 Median 0.8987 0.93907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67894000 28297000 39597000 17790000 8649900 9139900 48633000 18804000 29830000 1470900 843360 627570 0 0 0 0 0 0 0 0 0 25817 2896;951 27187 137354;137355;137356;137357;137358 138134;138135;138136;138137;138138 138135 5 NLGMAVEAWNEEGK HNFSLPVYKGEIQARNLGMAVEAWNEEGKA RNLGMAVEAWNEEGKAVWGESGELVCTKPI R N L G K A 2 0 2 0 0 0 3 2 0 0 1 1 1 0 0 0 0 1 0 1 0 0 14 0 1546.7086 Q86V21 Q86V21 463 476 AACS Acetoacetyl-CoA synthetase yes yes 2 0.0013066 49.35 By MS/MS 1 1.0637 1.0209 NaN 1 Median 1.0637 1.0209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4283900 2061900 2222100 4283900 2061900 2222100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25818 3284 27188 137359 138139;138140 138139 2 NLGMTDAFELGK RFKLEESYDMESVLRNLGMTDAFELGKADF VLRNLGMTDAFELGKADFSGMSQTDLSLSK R N L G K A 1 0 1 1 0 0 1 2 0 0 2 1 1 1 0 0 1 0 0 0 0 0 12 0 1294.6227 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12 A0A024QZX5 292 303 SERPINB6 Serpin B6 yes no 2 0.00061547 67.726 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.1532 1.026 16.82 6 Median 1.2267 1.1429 26.841 2 0 Median 1.346 1.1552 16.072 2 0 Median 0.9459 1.0208 NaN 1 0 Median 1.0846 0.92175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43096000 20578000 22518000 30324000 14632000 15692000 9262800 4124100 5138600 3256500 1709600 1546900 253390 112590 140800 0 0 0 0 0 0 25819 1 27189 137360;137361;137362;137363;137364;137365 138141;138142;138143 138142 3 NLGPGMTK AEVVETMEDLVTYTKNLGPGMTKMAKMIDE DLVTYTKNLGPGMTKMAKMIDERQQELTHQ K N L T K M 0 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 1 0 0 0 0 0 8 0 816.41637 P18206 P18206 163 170 VCL Vinculin yes yes 2 0.012576 54.712 By MS/MS By MS/MS 1 1 0.96081 0.89122 0.65537 2 Median 0.87393 0.8871 NaN 1 0 Median 1.0563 0.89536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9236000 4773200 4462800 796170 448000 348170 8439800 4325200 4114700 0 0 0 0 0 0 0 0 0 0 0 0 25820 2057 27190 137366;137367 138144;138145;138146 138146 3 NLGPINEWWITGFDGGEK IYDDDPSLEGGVNGKNLGPINEWWITGFDG PINEWWITGFDGGEKALIGFSTSFAEYILM K N L E K A 0 0 2 1 0 0 2 4 0 2 1 1 0 1 1 0 1 2 0 0 0 0 18 0 2031.969 P26358 P26358 457 474 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00017508 45.257 By matching By MS/MS By matching 1 2 2 0.81559 0.81017 8.7252 5 Median 0.8525 0.81017 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78889 0.86673 3.4259 2 0 Median 0.85488 0.75371 9.8753 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8516500 4544500 3972000 816830 427430 389400 0 0 0 7308500 3932400 3376000 391200 184650 206550 0 0 0 0 0 0 25821 2142 27191 137368;137369;137370;137371;137372 138147;138148;138149;138150 138148 4 NLGQNLWGPHR LIGRKEVPKQQAAYRNLGQNLWGPHRYGCL AAYRNLGQNLWGPHRYGCLAGVRVRTVVSG R N L H R Y 0 1 2 0 0 1 0 2 1 0 2 0 0 0 1 0 0 1 0 0 0 0 11 0 1290.6582 Q9P258 Q9P258 131 141 RCC2 Protein RCC2 yes yes 2;3 1.3678E-09 170.66 By MS/MS By matching By MS/MS By MS/MS 2 2 5 6 0.90739 0.85821 13.876 15 Median 0.91669 0.8701 22.928 2 0 Median 1.0467 0.90586 13.109 2 0 Median 0.87526 0.85821 17.024 5 1 Median 1.0157 0.88985 10.669 6 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 211110000 104830000 106280000 24821000 12363000 12458000 2883800 1452400 1431400 132820000 67535000 65289000 50579000 23478000 27101000 0 0 0 0 0 0 25822 4214 27192 137373;137374;137375;137376;137377;137378;137379;137380;137381;137382;137383;137384;137385;137386;137387 138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161;138162;138163;138164;138165;138166;138167 138157 17 NLGSINTELQDVQR IQKTKKLYIDSCARRNLGSINTELQDVQRI RNLGSINTELQDVQRIMVANIEEVLQRGEA R N L Q R I 0 1 2 1 0 2 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1585.806 O75396;A0A087X1A9 O75396 134 147 SEC22B Vesicle-trafficking protein SEC22b yes no 2 1.0988E-19 183.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1 1.3184 1.1996 25.098 10 Median 0.99592 0.97258 11.658 2 1 Median 1.0955 0.92517 37.65 2 0 Median 1.2991 1.2479 10.665 3 2 Median 1.6683 1.379 NaN 1 0 Median 1.7536 1.7387 NaN 1 0 Median 1.4718 1.1919 NaN 1 0 Median 151100000 67825000 83280000 96421000 44062000 52359000 10935000 4421400 6514000 36056000 16374000 19682000 1246600 483380 763180 3934600 1471500 2463100 2510900 1013100 1497800 25823 1669 27193 137388;137389;137390;137391;137392;137393;137394;137395;137396;137397 138168;138169;138170;138171;138172;138173;138174;138175 138171 8 NLGTALAELR IQDQASAMQLSQCAKNLGTALAELRTAAQK SQCAKNLGTALAELRTAAQKAQEACGPLEM K N L L R T 2 1 1 0 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1056.5928 Q9Y490 Q9Y490 1026 1035 TLN1 Talin-1 yes yes 2 0.00038123 112.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1.2862 1.1063 44.961 8 Median 0.97567 0.94746 5.7999 2 0 Median 1.211 0.99999 7.1875 2 0 Median 1.3401 1.4694 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.496 2.6288 24.133 2 0 Median 1.3934 1.1632 NaN 1 0 Median 77688000 33888000 43799000 28802000 13819000 14983000 33259000 14843000 18416000 7322700 3087600 4235200 0 0 0 7719600 1899000 5820600 584270 239940 344330 25824 4441 27194 137398;137399;137400;137401;137402;137403;137404;137405 138176;138177;138178;138179;138180;138181;138182 138176 7 NLGVHISR NIGVFICIRCAGIHRNLGVHISRVKSVNLD RCAGIHRNLGVHISRVKSVNLDQWTAEQIQ R N L S R V 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 894.50355 Q8IYB5;A0A087X1X9;X6RCC3;A0A087WV97;Q8WU79 Q8IYB5 62 69 SMAP1;SMAP2 Stromal membrane-associated protein 1;Stromal membrane-associated protein 2 yes no 2 0.014305 51.346 By matching By MS/MS 1 1 1.0666 0.98418 2.5927 2 Median 1.0239 1.0024 NaN 1 0 Median 1.1111 0.9663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2206100 1108100 1098000 771440 390110 381330 1434600 717980 716640 0 0 0 0 0 0 0 0 0 0 0 0 25825 3341 27195 137406;137407 138183 138183 1 NLGVVVAPHTLK KWELNPEIVARHFFKNLGVVVAPHTLKLPE FFKNLGVVVAPHTLKLPEEPITRWGEYWCE K N L L K L 1 0 1 0 0 0 0 1 1 0 2 1 0 0 1 0 1 0 0 3 0 0 12 0 1246.7398 Q9BYD2 Q9BYD2 196 207 MRPL9 39S ribosomal protein L9, mitochondrial yes yes 2;3 3.5464E-06 107.95 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 2 1 1.2971 1.0942 24.264 10 Median 0.88111 0.81945 9.3015 2 0 Median 1.0859 0.92091 29.759 2 1 Median 0.92947 0.87166 NaN 1 0 Median 1.4384 1.1886 6.4684 2 0 Median 1.4116 1.4442 5.2956 2 0 Median 1.2529 1.0544 NaN 1 0 Median 53704000 27440000 26264000 30765000 16362000 14403000 4185000 1827700 2357300 9944900 5252100 4692800 2759700 1090800 1668900 4449000 2137800 2311200 1601000 769650 831380 25826 3889 27196 137408;137409;137410;137411;137412;137413;137414;137415;137416;137417 138184;138185;138186;138187;138188;138189;138190;138191;138192 138186 9 NLHGDGIALWYTR WEMHVHFKVHGTGKKNLHGDGIALWYTRDR KKNLHGDGIALWYTRDRLVPGPVFGSKDNF K N L T R D 1 1 1 1 0 0 0 2 1 1 2 0 0 0 0 0 1 1 1 0 0 0 13 0 1514.763 Q12907;D6RBV2;D6RIU4;D6RDX1;D6RBH1 Q12907 127 139 LMAN2 Vesicular integral-membrane protein VIP36 yes no 2;3 1.0781E-08 96.229 By MS/MS By MS/MS By MS/MS 2 1 1 1.1782 1.1027 4.5844 3 Median 1.1782 1.1027 NaN 1 0 Median 1.3626 1.1332 NaN 1 0 Median 1.0631 1.0363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30578000 13793000 16785000 17607000 8412900 9193900 10895000 4361700 6533000 2076200 1017900 1058300 0 0 0 0 0 0 0 0 0 25827 2770 27197 137418;137419;137420;137421 138193;138194;138195;138196;138197;138198 138195 6 NLHHELELGVVMGK YAPEGSPILMPAYTRNLHHELELGVVMGKR RNLHHELELGVVMGKRCRAVPEAAAMDYVG R N L G K R 0 0 1 0 0 0 2 2 2 0 3 1 1 0 0 0 0 0 0 2 0 0 14 0 1574.8239 Q6P587 Q6P587 67 80 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2;3 7.345E-05 79.82 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 3 1 1 1.4094 1.2393 15.435 9 Median 0.933 0.88873 NaN 1 0 Median 1.1595 0.98266 NaN 1 0 Median 1.3765 1.2904 3.3767 2 0 Median 1.4953 1.2393 4.4661 3 1 Median 1.4406 1.4706 NaN 1 0 Median 1.3724 1.1318 NaN 1 0 Median 93815000 36283000 57531000 2197600 879870 1317700 2163500 847270 1316200 38724000 15498000 23226000 35421000 12656000 22765000 1865800 998720 867040 13443000 5403000 8039500 25828 3160 27198;27199 137422;137423;137424;137425;137426;137427;137428;137429;137430 138199;138200;138201;138202;138203;138204;138205;138206 138201 1679 8 NLHIPTMENGPELILR ACQVCPVHRILYKDRNLHIPTMENGPELIL LHIPTMENGPELILRFQKELKEIQYGIRAH R N L L R F 0 1 2 0 0 0 2 1 1 2 3 0 1 0 2 0 1 0 0 0 0 0 16 0 1845.9771 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 356 371 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2;3 0.04099 23.236 By MS/MS By MS/MS 1 3 0.91449 0.8102 10.43 4 Median 0.77526 0.77274 NaN 1 0 Median 0.97358 0.84948 11.978 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8260800 4254000 4006800 3247800 1758200 1489600 5013100 2495800 2517300 0 0 0 0 0 0 0 0 0 0 0 0 25829 1543 27200 137431;137432;137433;137434 138207;138208 138208 2 NLHQSGFSLSGAQIDDNIPR SAKTSPAKQQAPPVRNLHQSGFSLSGAQID GFSLSGAQIDDNIPRRTTQRIVAPPGGRAN R N L P R R 1 1 2 2 0 2 0 2 1 2 2 0 0 1 1 3 0 0 0 0 0 0 20 0 2168.061 Q16555;A0A1C7CYX9 Q16555 533 552 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 3 2.942E-19 113.53 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.89213 0.89958 40.102 6 Median 0.53461 0.51479 33.09 2 1 Median 1.2389 1.0747 NaN 1 0 Median 0.89213 0.90676 26.282 2 0 Median 1.3497 1.1284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46774000 25848000 20927000 25156000 14796000 10360000 2900700 1256000 1644700 17592000 9268100 8323500 1125500 527300 598200 0 0 0 0 0 0 25830 328 27201 137435;137436;137437;137438;137439;137440 138209;138210;138211;138212;138213 138210 5 NLHQSGFSLSGTQVDEGVR GSARGSPTRPNPPVRNLHQSGFSLSGTQVD SGFSLSGTQVDEGVRSASKRIVAPPGGRSN R N L V R S 0 1 1 1 0 2 1 3 1 0 2 0 0 1 0 3 1 0 0 2 0 0 19 0 2029.9817 Q14195;H0YBT4 Q14195 532 550 DPYSL3 Dihydropyrimidinase-related protein 3 yes no 3 1.0918E-18 124.91 By MS/MS By MS/MS By MS/MS 2 2 1 0.97579 0.96669 18.174 5 Median 1.0066 0.98311 0.10147 2 0 Median 0.92402 0.80707 25.522 2 0 Median 0.72808 0.73863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42677000 21727000 20950000 20230000 9205500 11025000 6008700 3355100 2653600 16438000 9166200 7271800 0 0 0 0 0 0 0 0 0 25831 2864 27202 137441;137442;137443;137444;137445 138214;138215;138216;138217 138216 4 NLHSEISGK FGDSNTVMRFLNEQKNLHSEISGKRDKSEE FLNEQKNLHSEISGKRDKSEEVQKIAELCA K N L G K R 0 0 1 0 0 0 1 1 1 1 1 1 0 0 0 2 0 0 0 0 0 0 9 0 983.50361 P15924 P15924 932 940 DSP Desmoplakin yes yes 2 0.04318 32.841 By matching By matching By MS/MS 1 1 2 1.1223 1.0857 6.223 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0441 1.1209 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0814 1.1698 NaN 1 0 Median 1.1925 1.0351 2.2416 2 0 Median 1750100 716590 1033500 0 0 0 0 0 0 175290 77484 97803 0 0 0 972600 384730 587870 602240 254370 347870 25832 2021 27203 137446;137447;137448;137449 138218 138218 1 NLHVVFTMNPSSEGLK SHEELYKWFTSQVIRNLHVVFTMNPSSEGL LHVVFTMNPSSEGLKDRAATSPALFNRCVL R N L L K D 0 0 2 0 0 0 1 1 1 0 2 1 1 1 1 2 1 0 0 2 0 0 16 0 1771.8927 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3061 3076 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 1.3479E-05 79.652 By MS/MS By MS/MS By matching 1 2 1 0.87434 0.86348 13.485 4 Median 0.70269 0.70352 NaN 1 0 Median 0.99761 0.92574 6.5736 2 0 Median 0.77346 0.84372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20611000 10622000 9988800 10160000 5239800 4920100 8005400 3959700 4045700 2446000 1423000 1023000 0 0 0 0 0 0 0 0 0 25833 2865 27204 137450;137451;137452;137453 138219;138220;138221;138222 138220 4 NLHVVFTMNPSSEGLKDR SHEELYKWFTSQVIRNLHVVFTMNPSSEGL VVFTMNPSSEGLKDRAATSPALFNRCVLNW R N L D R A 0 1 2 1 0 0 1 1 1 0 2 1 1 1 1 2 1 0 0 2 0 0 18 1 2043.0208 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3061 3078 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 4.5001E-13 142.39 By MS/MS By MS/MS By MS/MS 4 3 3 0.97427 1.0105 101.5 10 Median 0.9232 0.96963 46.034 4 0 Median 1.0688 0.99159 182.22 3 1 Median 0.88809 1.0297 37.394 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178620000 108480000 70141000 85021000 42886000 42135000 56272000 45684000 10588000 37322000 19905000 17418000 0 0 0 0 0 0 0 0 0 25834 2865 27205;27206 137454;137455;137456;137457;137458;137459;137460;137461;137462;137463 138223;138224;138225;138226;138227;138228;138229;138230;138231;138232;138233 138225 1556 11 NLIAPIFLHR AFEKPTQIYRFLRTRNLIAPIFLHRTLTYM FLRTRNLIAPIFLHRTLTYMSHRNSRTNIK R N L H R T 1 1 1 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1192.7081 J3QQW9;Q15022 J3QQW9 104 113 SUZ12 Polycomb protein SUZ12 yes no 2 0.022594 36.395 By MS/MS 1 0.61734 0.66207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61734 0.66207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1533400 873370 660050 0 0 0 0 0 0 1533400 873370 660050 0 0 0 0 0 0 0 0 0 25835 1344 27207 137464 138234 138234 1 NLIATAQAQNQQQTEGVK TIHTIQLIQHNRRLRNLIATAQAQNQQQTE ATAQAQNQQQTEGVKTEESEPLPSCPGSPP R N L V K T 3 0 2 0 0 5 1 1 0 1 1 1 0 0 0 0 2 0 0 1 0 0 18 0 1940.9916 O94864 O94864 78 95 SUPT7L STAGA complex 65 subunit gamma yes yes 2;3 5.0267E-06 63.727 By MS/MS By MS/MS 2 1 0.94381 0.90396 4.461 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91441 0.93182 5.8016 2 0 Median 1.0486 0.90396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8347300 4206500 4140700 0 0 0 0 0 0 7142800 3574800 3568000 1204400 631740 572690 0 0 0 0 0 0 25836 1731 27208 137465;137466;137467 138235;138236;138237;138238 138235 4 NLIDAGVDALR LQVIGGNVVTAAQAKNLIDAGVDALRVGMG AQAKNLIDAGVDALRVGMGSGSICITQEVL K N L L R V 2 1 1 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1155.6248 P12268;H0Y4R1 P12268 312 322 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.00016143 81.338 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.1083 1.0443 9.0972 8 Median 1.1072 1.0992 5.5225 3 1 Median 1.1301 0.95235 6.3388 2 0 Median 1.0108 1.0071 16.733 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4009 1.0909 NaN 1 0 Median 80870000 37174000 43696000 45194000 20608000 24586000 28524000 13198000 15326000 6866400 3267000 3599400 0 0 0 0 0 0 285630 101070 184570 25837 1148 27209 137468;137469;137470;137471;137472;137473;137474;137475 138239;138240;138241;138242;138243;138244;138245;138246;138247 138240 9 NLIDEDGNNQWPEGLK SMRKKVCDIAAELARNLIDEDGNNQWPEGL LIDEDGNNQWPEGLKFLFDSVSSQNVGLRE R N L L K F 0 0 3 2 0 1 2 2 0 1 2 1 0 0 1 0 0 1 0 0 0 0 16 0 1840.8592 O00410;H0Y8C6;E7ETV3;H0Y3V4 O00410 119 134 IPO5 Importin-5 yes no 2 0.019432 40.589 By MS/MS 1 1.2084 1.1963 NaN 1 Median 1.2084 1.1963 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2900900 1593800 1307000 2900900 1593800 1307000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25838 1460 27210 137476 138248 138248 1 NLIDRETGMR PFSGKTVSVSEAIKKNLIDRETGMRLLEAQ EAIKKNLIDRETGMRLLEAQIASGGVVDPV K N L M R L 0 2 1 1 0 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 0 0 10 1 1203.603 P15924 P15924 2114 2123 DSP Desmoplakin yes yes 2;3 0.00012885 77.379 By MS/MS 2 1.0515 1.1375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0515 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median 5572500 2461900 3110600 0 0 0 0 0 0 0 0 0 0 0 0 5572500 2461900 3110600 0 0 0 25839 2021 27211 137477;137478 138249;138250;138251 138249 3 NLIEWLNK DCSPADKPYIDEARRNLIEWLNKYM_____ YIDEARRNLIEWLNKYM_____________ R N L N K Y 0 0 2 0 0 0 1 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 8 0 1028.5655 Q96DG6 Q96DG6 236 243 CMBL Carboxymethylenebutenolidase homolog yes yes 2 0.01208 55.676 By MS/MS By matching By matching 2 1 1 0.9395 0.84841 20.039 4 Median 0.83464 0.78242 33.42 2 0 Median NaN NaN NaN 0 0 Median 0.85477 0.82057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0326 0.87719 NaN 1 0 Median 29730000 14820000 14910000 27100000 13524000 13576000 0 0 0 2487900 1232000 1256000 0 0 0 0 0 0 142570 64179 78394 25840 3626 27212 137479;137480;137481;137482 138252;138253 138252 2 NLIHGSDSVESAR PPGTIRGDFCIEVGKNLIHGSDSVESARRE GKNLIHGSDSVESARREIALWFRADELLCW K N L A R R 1 1 1 1 0 0 1 1 1 1 1 0 0 0 0 3 0 0 0 1 0 0 13 0 1383.6743 Q13232;H3BPR2 Q13232 132 144 NME3 Nucleoside diphosphate kinase 3;Nucleoside diphosphate kinase yes no 2;3 0.00038202 67.726 By MS/MS By MS/MS By MS/MS 2 2 1 0.85464 0.85091 16.345 5 Median 0.80304 0.79621 9.397 2 0 Median 1.2809 1.0658 1.3906 2 0 Median 0.79943 0.81177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15570000 7870100 7700200 9507100 5175200 4331800 4627700 1986900 2640800 1435500 707880 727630 0 0 0 0 0 0 0 0 0 25841 2798 27213 137483;137484;137485;137486;137487 138254;138255;138256;138257;138258;138259;138260;138261;138262 138259 9 NLIHGSDSVESARR PPGTIRGDFCIEVGKNLIHGSDSVESARRE KNLIHGSDSVESARREIALWFRADELLCWE K N L R R E 1 2 1 1 0 0 1 1 1 1 1 0 0 0 0 3 0 0 0 1 0 0 14 1 1539.7754 Q13232;H3BPR2 Q13232 132 145 NME3 Nucleoside diphosphate kinase 3;Nucleoside diphosphate kinase yes no 3 0.00065012 41.401 By MS/MS By MS/MS 1 1 1.0077 0.9868 12.42 2 Median 0.86229 0.90383 NaN 1 0 Median 1.1777 1.0774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6111900 2870400 3241400 3055600 1529100 1526500 3056200 1341300 1714900 0 0 0 0 0 0 0 0 0 0 0 0 25842 2798 27214 137488;137489 138263;138264 138263 2 NLIIEAVTNLR GQDKPHETYRLLKRRNLIIEAVTNLRLIES LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ R N L L R L 1 1 2 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1254.7296 Q12789;H3BU37 Q12789 619 629 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.013823 56.563 By MS/MS 2 0.92486 1.026 5.4696 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92486 1.026 5.4696 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6435900 3245600 3190400 0 0 0 0 0 0 6435900 3245600 3190400 0 0 0 0 0 0 0 0 0 25843 2758 27215 137490;137491 138265;138266 138265 2 NLILAGVK VLLVGLKGLGAEIAKNLILAGVKGLTMLDH LGAEIAKNLILAGVKGLTMLDHEQVTPEDP K N L V K G 1 0 1 0 0 0 0 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 826.52764 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65;A0A590UKA0 Q9UBE0 54 61 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 0.013171 53.554 By matching By MS/MS By MS/MS By matching 2 2 1 1 0.99927 0.93894 6.6497 6 Median 0.97672 0.91003 3.7564 2 0 Median 1.0708 0.91727 12.41 2 0 Median 0.89635 0.98893 NaN 1 0 Median 1.1043 0.94338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22532000 11284000 11247000 17491000 8755600 8735400 2476900 1119700 1357200 2355100 1307600 1047500 208460 101590 106860 0 0 0 0 0 0 25844 4237 27216 137492;137493;137494;137495;137496;137497 138267;138268 138267 2 NLILKPGGSLDGMDMLHNFLK KKEGIMNPEVGMKYRNLILKPGGSLDGMDM GGSLDGMDMLHNFLKREPNQKAFLMSRGLH R N L L K R 0 0 2 2 0 0 0 3 1 1 5 2 2 1 1 1 0 0 0 0 0 0 21 1 2312.2021 Q9BYT8;E9PCB6;H0YAK4 Q9BYT8 667 687 NLN Neurolysin, mitochondrial yes no 3 3.0358E-12 77.023 By MS/MS By matching By matching 1 1 1 1.0309 0.97223 10.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84221 0.90105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2618 1.049 NaN 1 0 Median 13451000 6657600 6793300 0 0 0 10030000 4996300 5033800 896960 496530 400430 0 0 0 0 0 0 2523900 1164800 1359100 25845 3895 27217 137498;137499;137500 138269;138270 138270 2 NLILSAFPR YGFCDVIPPNCIQLRNLILSAFPRNMRLPD NCIQLRNLILSAFPRNMRLPDPFTPNLKVD R N L P R N 1 1 1 0 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 9 0 1029.5971 A5YKK6 A5YKK6 2130 2138 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.017009 42.109 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0258 0.88952 33.755 5 Median 0.87517 0.87487 NaN 1 0 Median 1.097 0.97594 NaN 1 0 Median 0.76036 0.84379 NaN 1 0 Median 1.0258 0.88952 NaN 1 0 Median 1.8279 1.885 NaN 1 0 Median NaN NaN NaN 0 0 Median 5205300 2846300 2359000 2155100 1155000 1000100 218140 101200 116930 1907300 1242000 665240 114480 51947 62532 810310 296130 514180 0 0 0 25846 503 27218 137501;137502;137503;137504;137505 138271;138272 138271 2 NLILVVR IGGLLDVDCSEDVIKNLILVVRGQFSTDEL DCSEDVIKNLILVVRGQFSTDELVAEVEKR K N L V R G 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 7 0 825.54362 A0A087WVQ6;Q00610 A0A087WVQ6 835 841 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.0078867 87.582 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 3 2 2 2 1.366 1.2554 22.411 16 Median 1.3612 1.3266 4.879 3 0 Median 1.4238 1.1799 9.9146 4 0 Median 1.0839 1.1901 15.68 3 0 Median 1.5695 1.3697 13.41 2 0 Median 1.1577 1.2243 11.464 2 0 Median 1.1676 0.9916 70.171 2 0 Median 128870000 54653000 74214000 50657000 21484000 29172000 62101000 25142000 36959000 10494000 5254300 5239500 1461000 603990 856970 3516200 1954300 1561900 638370 213750 424620 25847 44 27219 137506;137507;137508;137509;137510;137511;137512;137513;137514;137515;137516;137517;137518;137519;137520;137521 138273;138274;138275;138276;138277;138278;138279;138280;138281;138282;138283;138284;138285;138286 138274 14 NLIMSGYSPEHDVSGISDPFLQVR AHFRKLVPQLVRILKNLIMSGYSPEHDVSG EHDVSGISDPFLQVRILRLLRILGRNDDDS K N L V R I 0 1 1 2 0 1 1 2 1 2 2 0 1 1 2 4 0 0 1 2 0 0 24 0 2660.2905 O43747 O43747 225 248 AP1G1 AP-1 complex subunit gamma-1 yes yes 3 0.00034122 26.84 By matching By MS/MS 1 1 0.70478 0.71284 10.36 2 Median 0.69529 0.66249 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71441 0.76702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9361000 5345800 4015200 6008500 3518000 2490500 0 0 0 3352500 1827800 1524700 0 0 0 0 0 0 0 0 0 25848 1587 27220 137522;137523 138287;138288 138287 2 NLIPQGIVK TKNGQKRAKLRRVHKNLIPQGIVKLDHPRI LRRVHKNLIPQGIVKLDHPRIHVDFPVILY K N L V K L 0 0 1 0 0 1 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 9 0 980.60187 O75896 O75896 85 93 TUSC2 Tumor suppressor candidate 2 yes yes 2 0.013129 45.718 By MS/MS By MS/MS 2 2 0.96775 0.90723 14.816 4 Median 1.0474 0.98498 14.499 2 0 Median 0.96232 0.83935 13.869 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9065200 3966200 5099000 6999300 3213300 3786000 2065900 752870 1313000 0 0 0 0 0 0 0 0 0 0 0 0 25849 1703 27221 137524;137525;137526;137527 138289;138290;138291 138291 3 NLISDSMK LKHFTCLTYNNGRLRNLISDSMKAKITAYV YNNGRLRNLISDSMKAKITAYVIILALHIH R N L M K A 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 8 0 906.44807 Q9GZS1 Q9GZS1 326 333 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2 0.0051787 77.282 By MS/MS 1 0.85737 0.83962 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85737 0.83962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6454200 3441200 3013000 0 0 0 0 0 0 6454200 3441200 3013000 0 0 0 0 0 0 0 0 0 25850 3913 27222 137528 138292;138293 138292 2 NLISPDLGVVFLNVPENLKNPEPNIK EEQSQGSTTNSDWMKNLISPDLGVVFLNVP LNVPENLKNPEPNIKMKRSIEEACFTLQYL K N L I K M 0 0 5 1 0 0 2 1 0 2 4 2 0 1 4 1 0 0 0 3 0 0 26 1 2872.5698 P46821;D6RA32;D6RA40 P46821 348 373 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 3 0.075574 6.295 By MS/MS 2 0.40426 0.46297 11.612 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40426 0.46297 11.612 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2278900 1584600 694210 0 0 0 0 0 0 2278900 1584600 694210 0 0 0 0 0 0 0 0 0 25851 2347 27223 137529;137530 138294 138294 1 NLKASLENSLR RRTVQSLEIDLDSMRNLKASLENSLREVEA DSMRNLKASLENSLREVEARYALQMEQLNG R N L L R E 1 1 2 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 11 1 1243.6884 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 315 325 KRT18 Keratin, type I cytoskeletal 18 yes no 2 0.020841 76.17 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25852 1869 27224 137531 138295 138295 1 NLKEELQVFR LTASRDHLCKLFDIRNLKEELQVFRGHKKE LFDIRNLKEELQVFRGHKKEATAVAWHPVH R N L F R G 0 1 1 0 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 1 1274.6983 Q9C0J8 Q9C0J8 319 328 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2;3 0.00017606 123.72 By MS/MS By matching 3 3 1.1083 1.1597 27.088 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1 1.1329 16.573 3 0 Plateau 1.7014 1.635 20.669 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35770000 18307000 17463000 0 0 0 0 0 0 34340000 17710000 16630000 1429200 596530 832690 0 0 0 0 0 0 25853 3907 27225 137532;137533;137534;137535;137536;137537 138296;138297;138298;138299 138299 4 NLKEFQEHLQDSVK QDILEKESIILKLERNLKEFQEHLQDSVKN RNLKEFQEHLQDSVKNTKDLNVKELKLKEE R N L V K N 0 0 1 1 0 2 2 0 1 0 2 2 0 1 0 1 0 0 0 1 0 0 14 1 1713.8686 Q96Q89 Q96Q89 1200 1213 KIF20B Kinesin-like protein KIF20B yes yes 3 0.0082395 26.548 By MS/MS 1 0.66327 0.76718 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66327 0.76718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9093500 5464500 3629000 0 0 0 0 0 0 9093500 5464500 3629000 0 0 0 0 0 0 0 0 0 25854 3717 27226 137538 138300 138300 1 NLKPIKPMQFLGDEETVR LNLPTGIPIVYELDKNLKPIKPMQFLGDEE PIKPMQFLGDEETVRKAMEAVAAQGKAKK_ K N L V R K 0 1 1 1 0 1 2 1 0 1 2 2 1 1 2 0 1 0 0 1 0 0 18 2 2114.1194 P18669 P18669 223 240 PGAM1 Phosphoglycerate mutase 1 yes yes 3;4 1.1323E-06 79.311 By MS/MS By MS/MS By matching 3 2 1 0.79683 0.82875 15.359 6 Median 0.79359 0.84501 2.5108 3 0 Median 0.82307 0.71362 6.8887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1446 1.0736 NaN 1 0 Median 170930000 90189000 80743000 125120000 67176000 57940000 44145000 22588000 21557000 0 0 0 0 0 0 0 0 0 1671400 425480 1245900 25855 2060 27227;27228 137539;137540;137541;137542;137543;137544 138301;138302;138303;138304;138305;138306;138307;138308;138309;138310;138311 138303 826 11 NLKVPSGQNADVQK YYKRIEPADAHVLQKNLKVPSGQNADVQKT KNLKVPSGQNADVQKTDN____________ K N L Q K T 1 0 2 1 0 2 0 1 0 0 1 2 0 0 1 1 0 0 0 2 0 0 14 1 1496.7947 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5;C9J5J3;A0A0D9SF32 C9J5D1 113 126 NAA50 N-alpha-acetyltransferase 50 yes no 3 0.0022345 36.292 By matching By MS/MS By MS/MS 1 1 1 1.0359 0.97491 11.999 3 Plateau 1.0359 1.0466 NaN 1 0 Median 1.0271 0.90812 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91583 0.82448 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6685500 2556800 4128800 1984300 837760 1146600 1966900 802780 1164100 0 0 0 2734300 916220 1818100 0 0 0 0 0 0 25856 677 27229 137545;137546;137547 138312;138313 138312 2 NLKVPSGQNADVQKTDN YYKRIEPADAHVLQKNLKVPSGQNADVQKT KVPSGQNADVQKTDN_______________ K N L D N - 1 0 3 2 0 2 0 1 0 0 1 2 0 0 1 1 1 0 0 2 0 0 17 2 1826.9123 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5;C9J5J3;A0A0D9SF32 C9J5D1 113 129 NAA50 N-alpha-acetyltransferase 50 yes no 3 0.028639 16.123 By matching By MS/MS By MS/MS 1 1 1 1.0162 1.0065 8.3958 3 Median 1.0024 1.0065 NaN 1 0 Median 1.0162 0.89839 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1755 1.0584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7555500 3759000 3796500 3124200 1502600 1621600 1444600 698290 746350 0 0 0 2986700 1558100 1428600 0 0 0 0 0 0 25857 677 27230 137548;137549;137550 138314;138315;138316;138317 138315 4 NLKVTAVPTLLK GEKPYWKDPNNDFRKNLKVTAVPTLLKYGT FRKNLKVTAVPTLLKYGTPQKLVESECLQA K N L L K Y 1 0 1 0 0 0 0 0 0 0 3 2 0 0 1 0 2 0 0 2 0 0 12 1 1295.8177 Q9BRA2;I3L2R6 Q9BRA2 87 98 TXNDC17 Thioredoxin domain-containing protein 17 yes no 3 0.009411 28.624 By MS/MS By matching 1 1 0.92573 0.83409 14.913 2 Median 0.98974 0.92686 NaN 1 0 Median 0.86586 0.75061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2402600 1017400 1385300 2199100 913100 1286000 203580 104290 99294 0 0 0 0 0 0 0 0 0 0 0 0 25858 3793 27231 137551;137552 138318;138319 138318 2 NLLALIHR TLSQAIVKVVIPTERNLLALIHRMIEFVVR VVIPTERNLLALIHRMIEFVVREGPMFEAM R N L H R M 1 1 1 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 948.58688 O15042;E7ET15 O15042 426 433 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.0026701 126.24 By MS/MS By MS/MS By MS/MS By matching 2 2 4 3 1.1233 1.1436 88.734 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2001 1.3031 6.3089 2 0 Median 1.1219 1.045 12.74 2 0 Median 1.3002 1.3432 22.908 4 0 Median 0.37906 0.40444 138.81 3 0 Median 37035000 17145000 19890000 0 0 0 0 0 0 12648000 5696300 6951800 1347200 615090 732060 22039000 10019000 12020000 1000200 814810 185370 25859 1515 27232 137553;137554;137555;137556;137557;137558;137559;137560;137561;137562;137563 138320;138321;138322;138323;138324;138325 138321 6 NLLAPMDTVLNR LLDQQQGDVKTGAMKNLLAPMDTVLNRLVD AMKNLLAPMDTVLNRLVDAGYCAASLHTSV K N L N R L 1 1 2 1 0 0 0 0 0 0 3 0 1 0 1 0 1 0 0 1 0 0 12 0 1355.7231 Q14146 Q14146 273 284 URB2 Unhealthy ribosome biogenesis protein 2 homolog yes yes 2 0.041008 45.161 By MS/MS 1 0.9623 1.0435 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9623 1.0435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1376000 634130 741830 0 0 0 0 0 0 1376000 634130 741830 0 0 0 0 0 0 0 0 0 25860 2857 27233 137564 138326 138326 1 NLLDEELQR LTTLRLQLEETDHQKNLLDEELQRLKAEAT ETDHQKNLLDEELQRLKAEATEAARQRSQV K N L Q R L 0 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1128.5775 Q15149 Q15149 2340 2348 PLEC Plectin yes yes 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.2568 1.0988 12.741 7 Median 1.473 1.4305 NaN 1 1 Median 1.3884 1.1097 NaN 1 0 Median 0.95488 1.0323 8.8276 2 0 Median 1.3897 1.2098 NaN 1 0 Median 1.0072 1.037 NaN 1 0 Median 1.2568 1.0476 NaN 1 0 Median 90533000 39096000 51437000 26120000 10030000 16089000 36141000 14849000 21292000 15743000 7848600 7894100 1682000 769880 912100 9304600 4872600 4432000 1543000 725930 817040 25861 2933 27234 137565;137566;137567;137568;137569;137570;137571 138327;138328;138329;138330;138331;138332;138333;138334 138328 8 NLLEISGPETVPLPNVPSIALPSKPAK LMAELEELEQEELDKNLLEISGPETVPLPN LPNVPSIALPSKPAKKKEEEDDDMKELENW K N L A K K 2 0 2 0 0 0 2 1 0 2 4 2 0 0 6 3 1 0 0 2 0 0 27 1 2780.5688 Q9H444 Q9H444 179 205 CHMP4B Charged multivesicular body protein 4b yes yes 3 1.6036E-08 39.883 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 0.38435 0.34637 36.529 5 Median 0.52631 0.51077 NaN 1 0 Median 0.38435 0.34637 NaN 1 0 Median 0.20428 0.22568 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.26933 0.2882 NaN 1 0 Median 0.61304 0.52497 NaN 1 0 Median 3878800 2939800 938960 317820 211540 106270 1826000 1310100 515880 1081800 955400 126360 0 0 0 502380 378380 124000 150850 84398 66453 25862 3961 27235 137572;137573;137574;137575;137576 138335 138335 1 NLLENSGWITQYTPYQPEVSQGR GMGYYNCSVPQTILRNLLENSGWITQYTPY ITQYTPYQPEVSQGRLESLLNYQTMVCDIT R N L G R L 0 1 2 0 0 3 2 2 0 1 2 0 0 0 2 2 2 1 2 1 0 0 23 0 2679.2929 P23378;A0A1W2PPG0;A0A1W2PPH6 P23378 150 172 GLDC Glycine dehydrogenase (decarboxylating), mitochondrial yes no 3 0.026906 13.057 By MS/MS 1 0.76056 0.81486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76056 0.81486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1305400 801280 504100 0 0 0 0 0 0 1305400 801280 504100 0 0 0 0 0 0 0 0 0 25863 2110 27236 137577 138336 138336 1 NLLESYHVPELIK KMNVKIPENIYRGIRNLLESYHVPELIKDA IRNLLESYHVPELIKDAHLLVESKNLDFQK R N L I K D 0 0 1 0 0 0 2 0 1 1 3 1 0 0 1 1 0 0 1 1 0 0 13 0 1553.8453 P42704 P42704 628 640 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 0.0014451 53.683 By MS/MS By MS/MS 2 1 0.8594 0.84461 14.046 3 Median 0.84692 0.82627 3.1037 2 0 Median 1.2407 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23777000 12278000 11500000 14006000 7852900 6152700 9771900 4424800 5347000 0 0 0 0 0 0 0 0 0 0 0 0 25864 2315 27237 137578;137579;137580 138337;138338;138339;138340 138337 4 NLLGLALGR PDTLEMRVRDGSKIRNLLGLALGRLEGGSA DGSKIRNLLGLALGRLEGGSARHVVFSGSG R N L G R L 1 1 1 0 0 0 0 2 0 0 4 0 0 0 0 0 0 0 0 0 0 0 9 0 925.5709 Q8N5L8 Q8N5L8 38 46 RPP25L Ribonuclease P protein subunit p25-like protein yes yes 2 0.0044414 60.682 By matching By MS/MS By matching 2 2 1 1.2147 1.1592 7.3828 5 Median 1.1857 1.1639 1.3115 2 0 Median NaN NaN NaN 0 0 Median 1.1931 1.1694 14.689 2 0 Median 1.426 1.1592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7488600 3181900 4306700 4403300 1859700 2543700 0 0 0 2922800 1255600 1667200 162410 66640 95768 0 0 0 0 0 0 25865 3380 27238 137581;137582;137583;137584;137585 138341 138341 1 NLLHQDAVDLFR QEGDKILSVNGQDLKNLLHQDAVDLFRNAG DLKNLLHQDAVDLFRNAGYAVSLRVQHRLQ K N L F R N 1 1 1 2 0 1 0 0 1 0 3 0 0 1 0 0 0 0 0 1 0 0 12 0 1439.7521 P57105 P57105 75 86 SYNJ2BP Synaptojanin-2-binding protein no no 3 0.00024271 59.57 By MS/MS By MS/MS 2 1 1.0658 1.0386 8.5524 3 Median 1.0871 1.068 3.9416 2 0 Median NaN NaN NaN 0 0 Median 0.91488 0.92843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7424200 3516600 3907600 5843700 2812700 3030900 0 0 0 1580500 703860 876680 0 0 0 0 0 0 0 0 0 25866 2517 27239 137586;137587;137588 138342;138343;138344;138345 138343 4 NLLHSLQSSGIGSK AIQQLAEAQPEATAKNLLHSLQSSGIGSKA KNLLHSLQSSGIGSKAGVPSKSSGSAALLA K N L S K A 0 0 1 0 0 1 0 2 1 1 3 1 0 0 0 4 0 0 0 0 0 0 14 0 1439.7732 Q92616 Q92616 88 101 GCN1L1 Translational activator GCN1 yes yes 3 1.5624E-10 118.58 By MS/MS By MS/MS 2 1 1.0994 1.0771 8.8496 3 Median 1.1051 1.1218 5.7499 2 1 Median 1.0994 0.97902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55971000 26813000 29158000 36715000 17272000 19443000 19256000 9541200 9715000 0 0 0 0 0 0 0 0 0 0 0 0 25867 3544 27240 137589;137590;137591 138346;138347;138348 138346 3 NLLHVTDTGVGMTR GNEELTVKIKCDKEKNLLHVTDTGVGMTRE KNLLHVTDTGVGMTREELVKNLGTIAKSGT K N L T R E 0 1 1 1 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 2 0 0 14 0 1512.7719 P14625;Q96GW1;A0A1W2PRR1 P14625 143 156 HSP90B1 Endoplasmin yes no 2;3 1.6479E-26 205.18 By MS/MS By MS/MS By MS/MS By MS/MS 7 4 3 2 1.1104 1.1295 10.548 16 Median 1.095 1.0505 8.0716 7 2 Median 1.3799 1.194 1.1417 4 0 Median 1.0878 1.1549 16.682 3 2 Plateau 1.3429 1.1569 1.0353 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 412120000 183300000 228820000 255310000 119390000 135910000 126840000 51189000 75647000 26982000 11591000 15390000 2994600 1131200 1863500 0 0 0 0 0 0 25868 2006 27241;27242 137592;137593;137594;137595;137596;137597;137598;137599;137600;137601;137602;137603;137604;137605;137606;137607 138349;138350;138351;138352;138353;138354;138355;138356;138357;138358;138359;138360;138361;138362;138363;138364;138365;138366;138367 138354 794 19 NLLHVTDTGVGMTREELVK GNEELTVKIKCDKEKNLLHVTDTGVGMTRE VTDTGVGMTREELVKNLGTIAKSGTSEFLN K N L V K N 0 1 1 1 0 0 2 2 1 0 3 1 1 0 0 0 3 0 0 3 0 0 19 1 2111.1045 P14625;Q96GW1;A0A1W2PRR1 P14625 143 161 HSP90B1 Endoplasmin yes no 2;3 5.5438E-24 172.82 By MS/MS By matching By MS/MS 6 1 1 1.0381 1.0845 33.6 8 Median 0.98154 1.0066 11.906 6 0 Median 1.4098 1.4099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2645 2.5006 NaN 1 1 Median NaN NaN NaN 0 0 Median 232900000 110020000 122880000 227770000 108290000 119480000 2065600 853210 1212400 0 0 0 0 0 0 3067000 878830 2188200 0 0 0 25869 2006 27243;27244 137608;137609;137610;137611;137612;137613;137614;137615 138368;138369;138370;138371;138372;138373;138374;138375;138376 138373 794 9 NLLIFENLIDLKR LKFYQGFLFSEKPEKNLLIFENLIDLKRRY EKNLLIFENLIDLKRRYNFPVEVEVPMERK K N L K R R 0 1 2 1 0 0 1 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 13 1 1599.9348 P78527 P78527 1974 1986 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00071766 74.162 By MS/MS By MS/MS By matching By matching 3 4 1 1 1.1197 1.1475 14.729 9 Median 1.0732 1.0907 8.5423 3 0 Median 1.3862 1.3355 8.8245 4 0 Median 0.89449 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9937 1.1104 NaN 1 0 Median NaN NaN NaN 0 0 Median 11061000 4838000 6222900 3063100 1472500 1590600 7696400 3202300 4494100 130350 73192 57158 0 0 0 171090 90045 81047 0 0 0 25870 2647 27245 137616;137617;137618;137619;137620;137621;137622;137623;137624 138377;138378;138379;138380;138381;138382 138380 5 NLLIQNKPGDDPNK VFAGGASGLQIFPTKNLLIQNKPGDDPNKI KNLLIQNKPGDDPNKIVDKVQGLLVPMKFP K N L N K I 0 0 3 2 0 1 0 1 0 1 2 2 0 0 2 0 0 0 0 0 0 0 14 1 1564.8209 A0A494C1F2;P35658;A0A494BZU9 A0A494C1F2 66 79 NUP214 Nuclear pore complex protein Nup214 yes no 2;3 1.0591E-10 127.42 By MS/MS By MS/MS 3 1 0.69119 0.79977 13.779 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65525 0.75816 7.5562 2 2 Median 0.99175 0.94472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21425000 13214000 8211000 0 0 0 0 0 0 19996000 12464000 7531400 1429100 749490 679620 0 0 0 0 0 0 25871 467 27246 137625;137626;137627;137628 138383;138384;138385;138386 138384 4 NLLIQNKPGDDPNKIVDK VFAGGASGLQIFPTKNLLIQNKPGDDPNKI IQNKPGDDPNKIVDKVQGLLVPMKFPIHHL K N L D K V 0 0 3 3 0 1 0 1 0 2 2 3 0 0 2 0 0 0 0 1 0 0 18 2 2020.0953 A0A494C1F2;P35658;A0A494BZU9 A0A494C1F2 66 83 NUP214 Nuclear pore complex protein Nup214 yes no 3;4 3.2313E-06 53.779 By MS/MS By matching 2 1 0.72205 0.83655 11.466 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71432 0.82759 1.5228 2 0 Median 0.99507 1.0085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17492000 9864600 7627000 0 0 0 0 0 0 16930000 9604700 7325200 561680 259910 301770 0 0 0 0 0 0 25872 467 27247 137629;137630;137631 138387;138388;138389 138389 3 NLLLAGAK PLHLAVQAGSEIIVRNLLLAGAKVNELTKH GSEIIVRNLLLAGAKVNELTKHRQTALHLA R N L A K V 2 0 1 0 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 798.49634 Q9P2R3 Q9P2R3 924 931 ANKFY1 Rabankyrin-5 yes yes 2 0.018519 47.849 By MS/MS 1 1.8709 1.6041 NaN 1 Median NaN NaN NaN 0 0 Median 1.8709 1.6041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 942990 325140 617850 0 0 0 942990 325140 617850 0 0 0 0 0 0 0 0 0 0 0 0 25873 4229 27248 137632 138390 138390 1 NLLLEEIR AVFMRTRKEFTEEVRNLLLEEIRWSNPEFS EFTEEVRNLLLEEIRWSNPEFSLKKYFPLL R N L I R W 0 1 1 0 0 0 2 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 998.57605 A0A075B754;Q96QE3 A0A075B754 945 952 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.012861 54.157 By MS/MS By matching 1 1 1.0364 1.0187 10.032 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9843 1.0936 NaN 1 0 Median 1.0913 0.94895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2579400 1313500 1265900 0 0 0 0 0 0 2498700 1279900 1218700 80770 33578 47192 0 0 0 0 0 0 25874 10 27249 137633;137634 138391 138391 1 NLLLLANSTEEQQK IIAPCKVYYDISTAKNLLLLANSTEEQQKW KNLLLLANSTEEQQKWVSRLVKKIPKKPPA K N L Q K W 1 0 2 0 0 2 2 0 0 0 4 1 0 0 0 1 1 0 0 0 0 0 14 0 1599.8468 O75116;E9PF63;Q14DU5 O75116 1326 1339 ROCK2 Rho-associated protein kinase 2 yes no 2 2.758E-05 97.734 By MS/MS 1 1.027 0.99222 NaN 1 Median 1.027 0.99222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12807000 5982700 6824600 12807000 5982700 6824600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25875 1644 27250 137635 138392 138392 1 NLLLSGAQLEASR FLGRARHFFTVTDPRNLLLSGAQLEASRNI PRNLLLSGAQLEASRNIVQNYRAGVVTPGI R N L S R N 2 1 1 0 0 1 1 1 0 0 4 0 0 0 0 2 0 0 0 0 0 0 13 0 1370.7518 S4R3N9;A0A1P0AYU5;Q9BWM7 S4R3N9 35 47 SFXN3 Sideroflexin-3 yes no 2 0.00055073 81.771 By MS/MS 2 1.0164 0.95174 1.6928 2 Median 1.0164 0.95174 1.6928 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27510000 13782000 13728000 27510000 13782000 13728000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25876 329 27251 137636;137637 138393;138394 138393 2 NLLNLDVIK EQLVTLSLLPESRWKNLLNLDVIKKKNKPK PESRWKNLLNLDVIKKKNKPKEPPKVPKSA K N L I K K 0 0 2 1 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1040.623 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 708 716 WDR36 WD repeat-containing protein 36 yes no 2 0.001354 82.452 By matching By MS/MS By matching By matching By matching 3 2 1 1 2 1.2866 1.2686 36.125 9 Median NaN NaN NaN 0 0 Median 1.5236 1.3847 5.9399 3 0 Median 1.2736 1.3874 12.655 2 0 Median 1.2866 1.1655 NaN 1 0 Median 0.68397 0.66091 NaN 1 0 Median 0.78734 0.66407 3.8514 2 0 Median 17104000 7519700 9584600 0 0 0 4909400 1966200 2943300 10261000 4528900 5732000 85983 43282 42701 614340 372930 241410 1233600 608430 625190 25877 188 27252 137638;137639;137640;137641;137642;137643;137644;137645;137646 138395 138395 1 NLLNMYHQALSTR NLMVQCFPPHYEIFKNLLNMYHQALSTRMQ FKNLLNMYHQALSTRMQDLASEDLEANEIV K N L T R M 1 1 2 0 0 1 0 0 1 0 3 0 1 0 0 1 1 0 1 0 0 0 13 0 1559.7878 O60645;D6RB59;H0Y995 O60645 310 322 EXOC3 Exocyst complex component 3 yes no 3 0.00376 34.179 By MS/MS 1 1.0506 1.1157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0506 1.1157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3084300 1490100 1594200 0 0 0 0 0 0 3084300 1490100 1594200 0 0 0 0 0 0 0 0 0 25878 1623 27253 137647 138396 138396 1 NLLNSVIGR SRASRDLLKEFPQPKNLLNSVIGRALGISH EFPQPKNLLNSVIGRALGISHAKDKLVYVH K N L G R A 0 1 2 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 984.57163 H7BXY3;Q7L2E3 H7BXY3 27 35 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0029628 68.383 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 1 2 1 1 1.389 1.3411 22.195 7 Median 1.1841 1.1516 NaN 1 0 Median 1.5687 1.3411 NaN 1 0 Median 0.83187 0.91284 NaN 1 0 Median 1.2824 1.0764 34.685 2 0 Median 1.389 1.4715 NaN 1 0 Median 1.6922 1.3912 NaN 1 0 Median 12445000 5281600 7163800 3244300 1375500 1868900 2667100 1110700 1556400 2793400 1239000 1554400 499080 207020 292060 2710300 1129500 1580800 531260 220020 311240 25879 1244 27254 137648;137649;137650;137651;137652;137653;137654 138397;138398;138399 138397 3 NLLPSNDPVVMEMASK GGNATRIGRFANYLRNLLPSNDPVVMEMAS LLPSNDPVVMEMASKAIGRLAMAGDTFTAE R N L S K A 1 0 2 1 0 0 1 0 0 0 2 1 2 0 2 2 0 0 0 2 0 0 16 0 1743.8535 P42345 P42345 113 128 MTOR Serine/threonine-protein kinase mTOR yes yes 2 0.00013515 56.225 By MS/MS 1 0.78076 0.75156 NaN 1 Median 0.78076 0.75156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936100 2171200 1764800 3936100 2171200 1764800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25880 2310 27255 137655 138400 138400 1 NLLQELK NAAEESLPEIQKEHRNLLQELKVIQENEHA PEIQKEHRNLLQELKVIQENEHALQKDALS R N L L K V 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 856.50182 Q9NTJ3;E9PD53 Q9NTJ3 992 998 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.014424 74.439 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0828 0.98402 23.907 5 Median 1.1639 1.1246 NaN 1 0 Median 1.4498 1.2595 NaN 1 0 Median 0.88424 0.95867 NaN 1 0 Median 1.0828 0.98402 NaN 1 0 Median 0.63443 0.66858 NaN 1 0 Median NaN NaN NaN 0 0 Median 15806000 7640700 8165700 8161300 3653200 4508100 556070 252550 303520 4171600 2244300 1927300 1422200 683550 738660 1495200 807110 688070 0 0 0 25881 4108 27256 137656;137657;137658;137659;137660 138401;138402;138403 138402 3 NLLQVDLTK RFPSHFSSDLKDLLRNLLQVDLTKRFGNLK LKDLLRNLLQVDLTKRFGNLKNGVNDIKNH R N L T K R 0 0 1 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1042.6023 A0A087WVC4;A0A0A0MS54;P22694;P17612 P17612 272 280 PRKACB;PRKACA cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha no no 2 0.0032184 66.621 By MS/MS By matching By matching By matching By matching 1 1 1 1 2 1.1268 0.96114 32.676 6 Median 1.0304 0.95527 NaN 1 0 Median 1.0997 0.93986 NaN 1 0 Median 0.80466 0.84759 NaN 1 0 Median 1.1545 0.96704 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9664 1.7242 8.9832 2 0 Median 21327000 10247000 11080000 11962000 5753800 6208300 1316000 603780 712190 5685000 3155000 2530100 650000 297750 352250 0 0 0 1714300 436820 1277500 25882 2044;40 27257 137661;137662;137663;137664;137665;137666 138404;138405 138404 2 NLLQVDLTKR RFPSHFSSDLKDLLRNLLQVDLTKRFGNLK KDLLRNLLQVDLTKRFGNLKNGVNDIKNHK R N L K R F 0 1 1 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 10 1 1198.7034 A0A087WVC4;A0A0A0MS54;P22694;P17612 P17612 272 281 PRKACB;PRKACA cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha no no 2;3 0.00017188 118.26 By MS/MS By matching By MS/MS 2 1 2 1.2954 1.2582 17.564 5 Median 1.1448 1.2266 17.453 2 1 Median 0.96948 0.90677 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4688 1.2992 4.5332 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20494000 9639300 10855000 19494000 9210000 10284000 92349 54865 37484 0 0 0 908370 374510 533860 0 0 0 0 0 0 25883 2044;40 27258 137667;137668;137669;137670;137671 138406;138407;138408;138409 138408 4 NLLSCVQEIHSR RRSLTTLSEQWIILRNLLSCVQEIHSRLMG ILRNLLSCVQEIHSRLMGPQAYPVAFPPQD R N L S R L 0 1 1 0 1 1 1 0 1 1 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1454.73 Q9NU22 Q9NU22 4255 4266 MDN1 Midasin yes yes 2 0.0006485 91.855 By MS/MS 1 0.17208 0.18085 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17208 0.18085 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18291000 15913000 2377800 0 0 0 0 0 0 18291000 15913000 2377800 0 0 0 0 0 0 0 0 0 25884 4112 27259 137672 138410 138410 1 NLLSLGHNNIVR TISLCCWDSRTAERRNLLSLGHNNIVRCIV ERRNLLSLGHNNIVRCIVHSPTNPGFMTCS R N L V R C 0 1 3 0 0 0 0 1 1 1 3 0 0 0 0 1 0 0 0 1 0 0 12 0 1348.7575 Q05048 Q05048 390 401 CSTF1 Cleavage stimulation factor subunit 1 yes yes 2;3 1.0177E-06 165.98 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.1064 1.0759 8.6869 7 Median 1.3058 1.2968 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0788 1.0467 3.7505 2 0 Median 1.3308 1.1433 8.5872 2 0 Median 1.0705 1.0779 4.652 2 0 Median NaN NaN NaN 0 0 Median 191070000 85249000 105820000 1567600 607380 960240 0 0 0 102300000 49562000 52742000 81712000 32450000 49262000 5486600 2629900 2856800 0 0 0 25885 2716 27260 137673;137674;137675;137676;137677;137678;137679 138411;138412;138413;138414;138415;138416;138417;138418;138419;138420;138421;138422 138420 12 NLLSVAYK KKVAGMDVELTVEERNLLSVAYKNVIGARR ELTVEERNLLSVAYKNVIGARRASWRIISS R N L Y K N 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 8 0 906.51747 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1;P27348;E9PG15;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2;P31947;P61981;P62258;B4DJF2;I3L3T1;K7EIT4;Q04917;A2IDB2 P62258 43 50 YWHAZ;YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein eta no no 1;2 0.0048619 130.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 12 10 7 6 4 6 1.1477 1.029 16.518 45 Median 1.0449 0.9759 15.488 12 0 Median 1.1966 1.0187 14.448 10 1 Median 1.1124 1.0442 4.7283 7 0 Median 1.2392 1.0377 10.742 6 0 Median 1.2711 1.3026 8.7798 4 0 Median 1.2303 1.0164 23.887 6 0 Median 4127500000 1853100000 2274400000 2501600000 1137600000 1364000000 707620000 304490000 403130000 565680000 257800000 307880000 141970000 61801000 80164000 175830000 76068000 99765000 34866000 15376000 19491000 25886 2576;2618;2210;2152;2714;2566;2211 27261 137680;137681;137682;137683;137684;137685;137686;137687;137688;137689;137690;137691;137692;137693;137694;137695;137696;137697;137698;137699;137700;137701;137702;137703;137704;137705;137706;137707;137708;137709;137710;137711;137712;137713;137714;137715;137716;137717;137718;137719;137720;137721;137722;137723;137724 138423;138424;138425;138426;138427;138428;138429;138430;138431;138432;138433;138434;138435;138436;138437;138438;138439;138440;138441;138442;138443;138444;138445;138446;138447;138448;138449;138450;138451;138452;138453;138454;138455;138456;138457;138458;138459;138460;138461;138462;138463;138464;138465 138454 41 NLLSVAYKNVIGAR KKVAGMDVELTVEERNLLSVAYKNVIGARR RNLLSVAYKNVIGARRASWRIISSIEQKEE R N L A R R 2 1 2 0 0 0 0 1 0 1 2 1 0 0 0 1 0 0 1 2 0 0 14 1 1516.8726 P62258;B4DJF2;I3L3T1;K7EIT4 P62258 43 56 YWHAE 14-3-3 protein epsilon yes no 2;3 8.7383E-05 86.275 By MS/MS By matching 2 2 1.3988 1.3318 7.353 4 Median 1.4003 1.3899 10.996 2 0 Median 1.3988 1.3318 4.8059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765500 2101500 3664000 5356800 1939800 3417100 408670 161740 246930 0 0 0 0 0 0 0 0 0 0 0 0 25887 2576 27262 137725;137726;137727;137728 138466;138467 138466 2 NLLSVAYKNVVGAR KSVTEQGAELSNEERNLLSVAYKNVVGARR RNLLSVAYKNVVGARRSSWRVVSSIEQKTE R N L A R R 2 1 2 0 0 0 0 1 0 0 2 1 0 0 0 1 0 0 1 3 0 0 14 1 1502.8569 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2;P61981;Q04917;A2IDB2 P63104 42 55 YWHAZ;YWHAB;YWHAG;YWHAH 14-3-3 protein zeta/delta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 2;3 1.5377E-05 95.81 By MS/MS By matching By matching 3 1 1 1.2033 1.1241 12.863 5 Median 1.1378 1.1896 17.8 3 0 Median 1.2033 1.1241 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2401 1.0977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17188000 7068400 10119000 14945000 6034500 8910100 1964900 906580 1058300 0 0 0 278300 127320 150980 0 0 0 0 0 0 25888 2618;2210;2714;2566 27263 137729;137730;137731;137732;137733 138468;138469;138470;138471 138469 4 NLLTGETEADPEMIKR RMINKYKRRRFQKTKNLLTGETEADPEMIK LLTGETEADPEMIKRAEDYGPVEVISHWHP K N L K R A 1 1 1 1 0 0 3 1 0 1 2 1 1 0 1 0 2 0 0 0 0 0 16 1 1815.9037 O96005 O96005 210 225 CLPTM1 Cleft lip and palate transmembrane protein 1 yes yes 2;3 2.0729E-05 74.257 By MS/MS By MS/MS 3 3 0.99284 0.97197 12.817 6 Median 1.0675 1.0728 3.3275 3 0 Median 0.96491 0.88692 3.0994 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103330000 50303000 53032000 58505000 27624000 30881000 44830000 22679000 22151000 0 0 0 0 0 0 0 0 0 0 0 0 25889 1805 27264 137734;137735;137736;137737;137738;137739 138472;138473;138474;138475;138476;138477;138478;138479 138472 8 NLLTGLVR RRMGLGPESRIHLLRNLLTGLVRHERIEAP SRIHLLRNLLTGLVRHERIEAPWARVDEMR R N L V R H 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 1 0 0 8 0 884.54435 E9PKV2;Q9NRX2 E9PKV2 31 38 MRPL17 39S ribosomal protein L17, mitochondrial yes no 2 0.010382 58.981 By MS/MS By MS/MS 1 1 1.2452 1.2067 10.3 2 Median 1.1446 1.1219 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3547 1.2979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11923000 5383900 6539400 7090900 3395900 3695100 0 0 0 4832400 1988000 2844400 0 0 0 0 0 0 0 0 0 25890 952 27265 137740;137741 138480;138481 138480 2 NLLTPLMEK VNSEYPAERKQALMRNLLTPLMEKFKILLE KQALMRNLLTPLMEKFKILLEKLMLAQDEE R N L E K F 0 0 1 0 0 0 1 0 0 0 3 1 1 0 1 0 1 0 0 0 0 0 9 0 1057.5842 O43592 O43592 619 627 XPOT Exportin-T yes yes 2 0.048485 31.422 By MS/MS By matching 1 2 0.98178 0.87132 1.9371 3 Median 0.90221 0.88167 NaN 1 0 Median 0.98932 0.86005 1.8421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15827000 7826200 8001100 4660500 2336800 2323700 11167000 5489300 5677400 0 0 0 0 0 0 0 0 0 0 0 0 25891 1576 27266 137742;137743;137744 138482;138483 138483 2 NLLTVTSSDEMMK RVVQMLGSLGGQINKNLLTVTSSDEMMKSY NKNLLTVTSSDEMMKSYVAWDREKRLSFAV K N L M K S 0 0 1 1 0 0 1 0 0 0 2 1 2 0 0 2 2 0 0 1 0 0 13 0 1467.6949 P78527 P78527 869 881 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 3.1005E-14 164.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 7 6 3 2 1.1376 1.1414 24.111 19 Median 1.1376 1.1414 NaN 1 0 Median 1.117 0.97566 25.057 2 0 Median 0.94654 1.0002 1.2675 5 0 Median 1.5304 1.3803 22.776 6 0 Median 0.96491 0.99662 3.8794 3 0 Median 1.5248 1.3128 11.686 2 0 Median 363800000 179730000 184070000 23287000 10334000 12953000 8433100 3779300 4653700 277410000 141690000 135720000 27348000 10697000 16651000 26196000 12808000 13388000 1132800 423480 709280 25892 2647 27267;27268;27269 137745;137746;137747;137748;137749;137750;137751;137752;137753;137754;137755;137756;137757;137758;137759;137760;137761;137762;137763;137764;137765;137766 138484;138485;138486;138487;138488;138489;138490;138491;138492;138493;138494;138495;138496;138497;138498;138499;138500;138501;138502;138503;138504;138505;138506;138507;138508;138509;138510;138511;138512;138513;138514 138497 1332;1333 31 NLLVSGWWGFVR PKLAHLKTIHTSTGKNLLVSGWWGFVRHPN TGKNLLVSGWWGFVRHPNYLGDLIMALAWS K N L V R H 0 1 1 0 0 0 0 2 0 0 2 0 0 1 0 1 0 2 0 2 0 0 12 0 1432.7616 Q14739 Q14739 533 544 LBR Lamin-B receptor yes yes 2 0.010147 37.191 By MS/MS 1 1.1103 1.148 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1103 1.148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 621400 282420 338980 0 0 0 0 0 0 621400 282420 338980 0 0 0 0 0 0 0 0 0 25893 2897 27270 137767 138515;138516 138516 2 NLLVSVQSR QLKFLSQKQDVVLIKNLLVSVQSRWEKVVQ DVVLIKNLLVSVQSRWEKVVQRSIERGRSL K N L S R W 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 9 0 1014.5822 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6624 6632 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00083587 93.162 By MS/MS By MS/MS By MS/MS 1 1 1 8.0003 7.7344 50.738 3 Median 8.0003 7.7344 NaN 1 1 Median 23.15 18.445 NaN 1 1 Median 7.269 7.5886 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 225100000 12401000 212700000 49150000 4688000 44462000 132300000 3936900 128370000 43648000 3775800 39872000 0 0 0 0 0 0 0 0 0 25894 1220 27271 137768;137769;137770 138517;138518;138519 138517 3 NLLVYGWGR KSQGYARSECFRVEKNLLVYGWGRWTDILS CFRVEKNLLVYGWGRWTDILSHGRYKRQLT K N L G R W 0 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 1 1 1 0 0 9 0 1076.5767 Q9P2D1;H3BTW3;Q3L8U1 Q9P2D1 1612 1620 CHD7;CHD9 Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 9 yes no 2 0.008607 66.682 By MS/MS 2 1.2004 1.2882 0.67429 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2004 1.2882 0.67429 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10736000 4849300 5886800 0 0 0 0 0 0 10736000 4849300 5886800 0 0 0 0 0 0 0 0 0 25895 4220 27272 137771;137772 138520;138521 138520 2 NLLWINSVAQQAEGR AIQGIAVWSSSIVGKNLLWINSVAQQAEGR NLLWINSVAQQAEGRFEKASVEYQEHLCAM K N L G R F 2 1 2 0 0 2 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 15 0 1697.8849 J3KRA9;Q96Q15;H3BQN7 J3KRA9 993 1007 SMG1 Serine/threonine-protein kinase SMG1 yes no 2 0.00041722 62.408 By MS/MS 1 1.3079 1.3267 NaN 1 Median 1.3079 1.3267 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2474800 1126500 1348300 2474800 1126500 1348300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25896 1325 27273 137773 138522 138522 1 NLLYIYPQSLNFANR EFPARDVYVPNTTYRNLLYIYPQSLNFANR NLLYIYPQSLNFANRQGSARNITVKVQFMY R N L N R Q 1 1 3 0 0 1 0 0 0 1 3 0 0 1 1 1 0 0 2 0 0 0 15 0 1824.9523 Q96N67;A0A1B0GUE9;A0A0U1RQG7 Q96N67 562 576 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.00036566 59.542 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.90116 0.79069 17.19 5 Median 0.82852 0.91297 30.988 2 0 Median 0.93313 0.78291 NaN 1 0 Median 0.71178 0.79069 NaN 1 0 Median 0.98113 0.84975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8397900 4333000 4064900 4740600 2434300 2306300 1095600 534200 561370 2408500 1286000 1122400 153260 78388 74872 0 0 0 0 0 0 25897 3707 27274 137774;137775;137776;137777;137778 138523;138524;138525;138526 138524 4 NLMAQLQETMR FLKVQIAEAINLQDKNLMAQLQETMRCVCR LQDKNLMAQLQETMRCVCRFDNRTCRKLLA K N L M R C 1 1 1 0 0 2 1 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 11 0 1333.6482 Q14C86;F8W9S7 Q14C86 1176 1186 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.00098242 84.213 By MS/MS 1 1.5633 1.5695 NaN 1 Median 1.5633 1.5695 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1715300 707110 1008200 1715300 707110 1008200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25898 2907 27275 137779 138527 138527 1 NLMFLVLR VKVFGWVHRLRRQGKNLMFLVLRDGTGYLQ RLRRQGKNLMFLVLRDGTGYLQCVLADELC K N L L R D 0 1 1 0 0 0 0 0 0 0 3 0 1 1 0 0 0 0 0 1 0 0 8 0 1004.5841 O43776;K7EQ35;K7EPK2;K7EMQ6 O43776 143 150 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2 0.033626 38.238 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1 1.3244 1.1952 11.068 8 Median 1.3332 1.2662 3.8507 2 0 Median 1.1962 1.0428 6.7674 2 0 Median 1.316 1.3532 NaN 1 0 Median 1.3888 1.1594 NaN 1 0 Median 1.337 1.344 NaN 1 0 Median 1.3329 1.1078 NaN 1 0 Median 23372000 10058000 13314000 7459900 3215800 4244100 8772400 3784500 4987900 5361500 2320000 3041500 1518900 625520 893400 153090 59685 93408 106440 52988 53454 25899 1589 27276 137780;137781;137782;137783;137784;137785;137786;137787 138528;138529 138529 2 NLMIDIQK PQESYTTITVLVPPRNLMIDIQKDTAVEGE TVLVPPRNLMIDIQKDTAVEGEEIEVNCTA R N L Q K D 0 0 1 1 0 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 973.52665 A0A087X1W8;A0A0A0MTJ8;X5DQS5;Q9BY67;A0A087X0T8;F5H125;H0YG94 A0A087X1W8 105 112 CADM1 Cell adhesion molecule 1 yes no 2 0.013762 52.403 By MS/MS By matching 1 1 1.1764 1.0538 7.6851 2 Median 1.0873 0.99803 NaN 1 0 Median 1.2728 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12899000 6281400 6617600 7473300 3849800 3623500 5425700 2431600 2994100 0 0 0 0 0 0 0 0 0 0 0 0 25900 124 27277 137788;137789 138530 138530 1 NLMNAVVQTVK VSGVDSAMSLIQAAKNLMNAVVQTVKASYV QAAKNLMNAVVQTVKASYVASTKYQKSQGM K N L V K A 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 11 0 1215.6645 P35221;E5RGY7;Q9UI47 P35221 824 834 CTNNA1;CTNNA3 Catenin alpha-1;Catenin alpha-3 yes no 2 0.0025757 52.725 By matching By matching By MS/MS By matching 1 1 1 2 0.88537 0.85936 109.09 5 Median 0.88537 0.85936 NaN 1 0 Median 0.081585 0.079602 NaN 1 0 Median 0.86028 0.94238 NaN 1 0 Median 1.0513 0.90425 20.334 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18412000 9988400 8423700 7687700 4127000 3560600 1172900 1084000 88897 7874300 4005300 3869000 1677300 772160 905120 0 0 0 0 0 0 25901 2232 27278 137790;137791;137792;137793;137794 138531;138532 138531 2 NLMQFHTVGTK LAKVIQIATSSSTAKNLMQFHTVGTKTKLS STAKNLMQFHTVGTKTKLSTLTLLWPCPMT K N L T K T 0 0 1 0 0 1 0 1 1 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1274.6441 H7BXY3;Q7L2E3 H7BXY3 236 246 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 3 0.02811 22.046 By MS/MS By matching 1 2 1.182 0.92335 16.895 3 Plateau 0.91772 0.9152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0195 1.0664 20.371 2 0 Median NaN NaN NaN 0 0 Median 6359000 2929500 3429600 2051900 1054400 997500 0 0 0 0 0 0 0 0 0 4307200 1875100 2432100 0 0 0 25902 1244 27279 137795;137796;137797 138533 138533 1 NLMSQLGTK SGNIQRISQATAQIKNLMSQLGTKQDSSKL ATAQIKNLMSQLGTKQDSSKLQENLQQLQH K N L T K Q 0 0 1 0 0 1 0 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 9 0 990.51682 B1AJQ6;Q86Y82 B1AJQ6 45 53 STX12 Syntaxin-12 yes no 2 0.00093589 89.698 By MS/MS By matching 1 1 0.34861 0.32019 160.93 2 Median 1.0901 0.99908 NaN 1 0 Median 0.11148 0.10261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15648000 7471000 8177000 14664000 6595100 8068500 984360 875870 108480 0 0 0 0 0 0 0 0 0 0 0 0 25903 563 27280 137798;137799 138534;138535 138534 2 NLMTSEIHNTVK HFANKKCQDVIVAARNLMTSEIHNTVKIIP AARNLMTSEIHNTVKIIPDSKINVPELPTP R N L V K I 0 0 2 0 0 0 1 0 1 1 1 1 1 0 0 1 2 0 0 1 0 0 12 0 1385.6973 O43264 O43264 413 424 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.0048683 62.303 By MS/MS By MS/MS 1 1 1.6324 1.4742 25.696 2 Median 1.9263 1.768 NaN 1 1 Median 1.3833 1.2293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8999900 3180400 5819500 7485100 2611400 4873800 1514800 569020 945780 0 0 0 0 0 0 0 0 0 0 0 0 25904 1562 27281 137800;137801 138536;138537 138536 2 NLNAPVQPFEDPEHMK SERTILKSIHLSDERNLNAPVQPFEDPEHM LNAPVQPFEDPEHMKNVIALAFDYRAGTSP R N L M K N 1 0 2 1 0 1 2 0 1 0 1 1 1 1 3 0 0 0 0 1 0 0 16 0 1864.8778 Q07954 Q07954 2219 2234 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 3.7673E-05 60.918 By MS/MS By matching By matching By matching 3 1 1 1 0.92481 0.93303 46.777 6 Median 0.77547 0.83074 52.117 3 0 Median 1.1988 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75958 0.72896 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7447 1.6058 NaN 1 0 Median 25357000 15644000 9712600 18853000 12682000 6171100 2344400 960990 1383400 0 0 0 3712000 1882400 1829500 0 0 0 447440 118880 328570 25905 2733 27282 137802;137803;137804;137805;137806;137807 138538 138538 1 NLNGHSIGQYR EVEIDGKTYQVKPIRNLNGHSIGQYRIHAG KPIRNLNGHSIGQYRIHAGKTVPIVKGGEA R N L Y R I 0 1 2 0 0 1 0 2 1 1 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1257.6214 P50579;F8VRR3;F8VQZ7 P50579 327 337 METAP2 Methionine aminopeptidase 2 yes no 3 0.0078795 31.843 By MS/MS 1 0.81421 0.70696 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81421 0.70696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 613210 295260 317950 0 0 0 0 0 0 0 0 0 613210 295260 317950 0 0 0 0 0 0 25906 2418 27283 137808 138539;138540 138540 2 NLNGILADEAGLGK YQKIGLDWLAKLYRKNLNGILADEAGLGKT KNLNGILADEAGLGKTVQIIAFFAHLACNE K N L G K T 2 0 2 1 0 0 1 3 0 1 3 1 0 0 0 0 0 0 0 0 0 0 14 0 1383.7358 Q96L91 Q96L91 1109 1122 EP400 E1A-binding protein p400 yes yes 2 5.4319E-08 103.34 By matching By MS/MS By matching 1 2 1 0.71383 0.69598 28.439 4 Median 0.52654 0.49309 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79305 0.864 9.0738 2 0 Median 0.69658 0.59778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12448000 6511900 5935600 3137900 1654400 1483500 0 0 0 8445800 4343900 4101900 863870 513580 350290 0 0 0 0 0 0 25907 3700 27284 137809;137810;137811;137812 138541;138542 138542 2 NLNGTLHELLR ILVTNLDFHDEQKRRNLNGTLHELLRMNIV QKRRNLNGTLHELLRMNIVPIVNTNDAVVP R N L L R M 0 1 2 0 0 0 1 1 1 0 4 0 0 0 0 0 1 0 0 0 0 0 11 0 1278.7044 P54886 P54886 202 212 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 0.00043274 102.61 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 1.1546 1.0341 29.258 6 Median 0.93743 0.88689 10.461 2 2 Median 1.4048 1.2147 NaN 1 0 Median 1.7349 1.8621 NaN 1 1 Median 1.2995 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0258 0.90713 NaN 1 0 Median 49393000 22842000 26551000 26259000 13288000 12970000 17040000 7064000 9976400 3429000 1368700 2060400 2586300 1085300 1501000 0 0 0 78245 35394 42850 25908 2488 27285 137813;137814;137815;137816;137817;137818;137819 138543;138544;138545;138546;138547 138544 5 NLNHVSYGR LNAGGVTVSYFEWLKNLNHVSYGRLTFKYE YFEWLKNLNHVSYGRLTFKYERDSNYHLLM K N L G R L 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1058.5257 P00367;P49448 P00367 445 453 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.0030918 67.494 By MS/MS By MS/MS By matching 1 1 1 1.4631 1.2313 24.446 3 Median 0.85232 0.85028 NaN 1 0 Median 1.4631 1.2313 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5233 1.3491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13761000 6058200 7702900 3204600 1706800 1497800 10280000 4247200 6033000 0 0 0 276320 104140 172170 0 0 0 0 0 0 25909 1814 27286 137820;137821;137822 138548;138549;138550 138549 3 NLNIQLK AIYDLLDTAMINNSRNLNIQLKWKRPPENE TAMINNSRNLNIQLKWKRPPENEAPPVPFL R N L L K W 0 0 2 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 841.50215 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPR6;A0A1W2PPQ7;A0A1W2PSC5;A0A1W2PQ52;A0A1W2PRZ8;A0A1W2PR92;A0A1W2PP13;H7C2Y2;A0A1W2PRH2 Q969N2 331 337 PIGT GPI transamidase component PIG-T yes no 2 0.040222 44.973 By MS/MS 1 1.2677 1.0946 NaN 1 Median NaN NaN NaN 0 0 Median 1.2677 1.0946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2292200 1071900 1220400 0 0 0 2292200 1071900 1220400 0 0 0 0 0 0 0 0 0 0 0 0 25910 331 27287 137823 138551 138551 1 NLNLEEK AALGAEEMVEMLTDRNLNLEEKVRELRETV MVEMLTDRNLNLEEKVRELRETVGDLEAMN R N L E K V 0 0 2 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 858.4447 E7EX90;Q14203;Q6AWB1 E7EX90 430 436 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.0061442 94.262 By MS/MS 1 1.1351 0.96741 NaN 1 Median NaN NaN NaN 0 0 Median 1.1351 0.96741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5463100 2601800 2861200 0 0 0 5463100 2601800 2861200 0 0 0 0 0 0 0 0 0 0 0 0 25911 906 27288 137824 138552;138553 138553 2 NLNLNDESQHGLLMQLLK IFTLSCNLLKQASGKNLNLNDESQHGLLMQ LNDESQHGLLMQLLKLTHNCLNFDFIGTST K N L L K L 0 0 3 1 0 2 1 1 1 0 6 1 1 0 0 1 0 0 0 0 0 0 18 0 2079.0783 E7ESC6;Q9UIA9 E7ESC6 205 222 XPO7 Exportin-7 yes no 2;3 0.0017904 42.813 By MS/MS By MS/MS By matching 2 4 1 1.1013 1.0133 32.347 7 Median 0.68657 0.68053 56.304 2 0 Median 1.3081 1.1249 8.8079 4 2 Linear 1.1013 1.1457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23866000 10886000 12980000 5971200 3111900 2859300 16703000 7158200 9544700 1191800 615410 576370 0 0 0 0 0 0 0 0 0 25912 885 27289 137825;137826;137827;137828;137829;137830;137831 138554;138555;138556;138557 138556 4 NLNNSNLFSPVNR GAFMPKKSIKKLVLKNLNNSNLFSPVNRDS LKNLNNSNLFSPVNRDSENLASPSEYPENG K N L N R D 0 1 5 0 0 0 0 0 0 0 2 0 0 1 1 2 0 0 0 1 0 0 13 0 1487.7481 P52948;A0A3B3ITD8;H0YEN4 P52948 604 616 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 1.7171E-07 168.74 By MS/MS By MS/MS By matching 2 3 1 0.83458 0.78382 16.295 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82323 0.85591 4.922 2 0 Median 0.8888 0.74323 20.425 3 0 Median NaN NaN NaN 0 0 Median 0.82863 0.67792 NaN 1 0 Median 79830000 42015000 37815000 0 0 0 0 0 0 68286000 35974000 32311000 10612000 5485300 5127100 0 0 0 931890 555630 376260 25913 2462 27290 137832;137833;137834;137835;137836;137837 138558;138559;138560;138561;138562;138563 138559 6 NLNPHSTMDSILGALAPYAVLSSSNVR SEPSSENANDTIILRNLNPHSTMDSILGAL GALAPYAVLSSSNVRVIKDKQTQLNRGFAF R N L V R V 3 1 3 1 0 0 0 1 1 1 4 0 1 0 2 5 1 0 1 2 0 0 27 0 2826.4334 P98175 P98175 306 332 RBM10 RNA-binding protein 10 yes yes 3 0.011715 17.076 By matching By matching By MS/MS 1 1 1 0.79151 0.76819 16.692 2 Median NaN NaN NaN 0 0 Median 0.97498 0.86443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64256 0.68267 NaN 1 0 Median NaN NaN NaN 0 0 Median 3011800 1751800 1260000 0 0 0 180050 85544 94504 695880 426700 269180 0 0 0 2135900 1239600 896330 0 0 0 25914 2671 27291 137838;137839;137840 138564;138565 138564 2 NLNPVFGGSGPALTGLR YPKAEISRLSASQIRNLNPVFGGSGPALTG NPVFGGSGPALTGLRNLGNTCYMNSILQCL R N L L R N 1 1 2 0 0 0 0 4 0 0 3 0 0 1 2 1 1 0 0 1 0 0 17 0 1668.8948 P40818 P40818 764 780 USP8 Ubiquitin carboxyl-terminal hydrolase 8 yes yes 2 0.0063058 42.809 By MS/MS 1 0.78735 0.77783 NaN 1 Median 0.78735 0.77783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2078500 1108300 970180 2078500 1108300 970180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25915 2290 27292 137841 138566 138566 0 NLNSPALLEDSVIR ALMTGSLPGFVDVIRNLNSPALLEDSVIRQ RNLNSPALLEDSVIRQAKAAGKRIVFYGDE R N L I R Q 1 1 2 1 0 0 1 0 0 1 3 0 0 0 1 2 0 0 0 1 0 0 14 0 1539.8257 D6R9J9;E7EM50;D6RFE8;E7EWV1;Q5H8A4 D6R9J9 136 149 PIGG GPI ethanolamine phosphate transferase 2 yes no 2 0.00089472 67.153 By MS/MS 1 1.1514 1.1659 NaN 1 Median 1.1514 1.1659 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2219200 1027500 1191700 2219200 1027500 1191700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25916 803 27293 137842 138567 138567 1 NLNVILAK DGLDEDGEKEARLIRNLNVILAKYGLDGKK KEARLIRNLNVILAKYGLDGKKDARQVTSN R N L A K Y 1 0 2 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 883.5491 P30533;A0A3B3IRQ7 P30533 114 121 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 0.013171 53.554 By matching By MS/MS By MS/MS By MS/MS 2 2 1 3 1.2637 1.2011 17.876 8 Median 1.246 1.2092 8.5273 2 0 Median 0.99404 0.91926 16.768 2 0 Median 1.2661 1.3079 NaN 1 0 Median 1.4208 1.2672 13.136 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65828000 28412000 37417000 15302000 6857000 8445400 22147000 8966800 13180000 16189000 7758100 8430900 12190000 4829900 7360200 0 0 0 0 0 0 25917 2196 27294 137843;137844;137845;137846;137847;137848;137849;137850 138568;138569;138570 138569 3 NLPDPGKAQDFVK ANCSAMFGKLMTIAKNLPDPGKAQDFVKKF AKNLPDPGKAQDFVKKFNQVLGDDEKLRSQ K N L V K K 1 0 1 2 0 1 0 1 0 0 1 2 0 1 2 0 0 0 0 1 0 0 13 1 1427.7409 Q29RF7 Q29RF7 545 557 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.010248 26.648 By MS/MS 1 0.63244 0.72887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63244 0.72887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7665300 4268700 3396700 0 0 0 0 0 0 7665300 4268700 3396700 0 0 0 0 0 0 0 0 0 25918 3003 27295 137851 138571 138571 1 NLPEEYELK RNRYQLEIPENFTTRNLPEEYELKSTKKGC ENFTTRNLPEEYELKSTKKGCKRYWTKTIE R N L L K S 0 0 1 0 0 0 3 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1133.5605 P52701;A0A494C0M1;A0A087WWJ1 P52701 989 997 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0030333 67.897 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 2 1 1.0833 0.97646 17.453 7 Median 0.91778 0.88588 NaN 1 0 Median 1.3204 1.1643 18.555 2 0 Median 0.75505 0.80539 NaN 1 0 Median 1.0266 0.89185 12.818 2 0 Median NaN NaN NaN 0 0 Median 1.2278 1.0627 NaN 1 0 Median 42090000 21924000 20166000 14366000 7417900 6947700 3943100 1667800 2275300 17495000 9688000 7806600 6043200 3027400 3015800 0 0 0 243740 122710 121030 25919 2453 27296 137852;137853;137854;137855;137856;137857;137858 138572;138573;138574;138575 138573 4 NLPFDFTWK HAPGVARKACQIFVRNLPFDFTWKMLKDKF CQIFVRNLPFDFTWKMLKDKFNECGHVLYA R N L W K M 0 0 1 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 0 0 0 9 0 1166.576 A0A087X0X3;P52272;M0R2I7;M0QY96 A0A087X0X3 659 667 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0032576 66.351 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 2 4 3 1.1501 0.97754 28.646 14 Median 1.3965 1.3268 13.447 4 0 Median 1.0903 0.90819 NaN 1 0 Median 1.037 1.0725 50.738 2 0 Median NaN NaN NaN 0 0 Median 0.7182 0.72032 5.673 4 0 Median 1.2694 1.0391 8.6844 3 0 Median 78602000 42493000 36109000 8934400 3850100 5084200 2591400 1225900 1365500 23540000 12992000 10548000 0 0 0 41554000 23547000 18007000 1983000 879000 1104000 25920 116 27297 137859;137860;137861;137862;137863;137864;137865;137866;137867;137868;137869;137870;137871;137872 138576;138577;138578;138579;138580;138581;138582;138583;138584;138585;138586;138587;138588;138589;138590;138591 138586 16 NLPFSVENK TSVVRRSHYEEGPGKNLPFSVENKWSLLAK EEGPGKNLPFSVENKWSLLAKMCLYFGSAF K N L N K W 0 0 2 0 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 9 0 1046.5397 D6R9Z7;P15954 D6R9Z7 26 34 COX7C Cytochrome c oxidase subunit 7C, mitochondrial yes no 2 0.00061613 109.36 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.56392 0.57316 30.822 5 Median 0.73015 0.63664 NaN 1 0 Median 1.2336 1.0063 NaN 1 0 Median 0.56392 0.57316 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47278 0.49971 NaN 1 0 Median 0.56043 0.45653 NaN 1 0 Median 31338000 16626000 14711000 12894000 7362000 5531700 12764000 5714800 7049000 1661700 1006300 655480 0 0 0 1405000 821900 583120 2613700 1721500 892210 25921 809 27298 137873;137874;137875;137876;137877 138592;138593;138594 138594 3 NLPFTPILASVNR VAGAVVTYYFTRDKRNLPFTPILASVNRLI KRNLPFTPILASVNRLIRYHLGTVAKGSFI R N L N R L 1 1 2 0 0 0 0 0 0 1 2 0 0 1 2 1 1 0 0 1 0 0 13 0 1440.8089 Q8WWI5 Q8WWI5 422 434 SLC44A1 Choline transporter-like protein 1 yes yes 2 0.0021913 48.741 By MS/MS By matching 2 1 0.6249 0.63261 25.056 3 Median 0.57052 0.57385 13.785 2 0 Median 0.96204 0.8559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3143500 1889700 1253800 2942600 1776300 1166200 200970 113380 87587 0 0 0 0 0 0 0 0 0 0 0 0 25922 3509 27299 137878;137879;137880 138595 138595 1 NLPGLVQEGEPFSEEATLFTK ITFLLAGIECPRGARNLPGLVQEGEPFSEE QEGEPFSEEATLFTKELVLQREVEVEVESM R N L T K E 1 0 1 0 0 1 4 2 0 0 3 1 0 2 2 1 2 0 0 1 0 0 21 0 2305.1478 Q7KZF4;H7C597 Q7KZF4 566 586 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 0.023153 18.364 By MS/MS By matching 4 3 0.73041 0.7822 28.522 7 Median 0.6923 0.67984 40.272 4 0 Median NaN NaN NaN 0 0 Median 0.74999 0.78895 2.7804 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15448000 8577400 6870700 10250000 5691100 4559200 0 0 0 5197700 2886200 2311500 0 0 0 0 0 0 0 0 0 25923 3214 27300 137881;137882;137883;137884;137885;137886;137887 138596;138597 138596 2 NLPIYSEEIVEMYK YTYSGLFCVVINPYKNLPIYSEEIVEMYKG KNLPIYSEEIVEMYKGKKRHEMPPHIYAIT K N L Y K G 0 0 1 0 0 0 3 0 0 2 1 1 1 0 1 1 0 0 2 1 0 0 14 0 1726.8488 P35579;Q5BKV1 P35579 126 139 MYH9 Myosin-9 yes no 2 8.6828E-08 99.215 By MS/MS By MS/MS By matching By matching By matching 3 1 1 1 2 0.89567 0.86315 71.741 8 Median 1.0977 1.083 96.133 3 1 Median 0.84168 0.74522 NaN 1 0 Median 0.53358 0.59025 NaN 1 0 Median 0.80517 0.72676 NaN 1 0 Median 0.82176 0.82549 27.085 2 0 Median NaN NaN NaN 0 0 Median 104420000 34885000 69537000 74808000 18947000 55860000 22999000 12199000 10801000 3901900 1965000 1936900 144860 76703 68153 2568200 1696900 871340 0 0 0 25924 2244 27301;27302 137888;137889;137890;137891;137892;137893;137894;137895 138598;138599;138600;138601;138602;138603 138599 995 6 NLPIYSENIIEMYR YTYSGLFCVVINPYKNLPIYSENIIEMYRG KNLPIYSENIIEMYRGKKRHEMPPHIYAIS K N L Y R G 0 1 2 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 2 0 0 0 14 0 1753.8709 P35580;E7ERA5 P35580 130 143 MYH10 Myosin-10 yes no 2 6.775E-11 122.42 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.93737 0.83615 25.746 5 Median 0.93737 0.87975 NaN 1 0 Median 1.1321 0.96544 20.333 2 1 Median 0.56251 0.61954 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56717 0.60328 NaN 1 0 Median NaN NaN NaN 0 0 Median 33884000 16234000 17650000 15671000 7544500 8126700 12051000 4742800 7308600 5283200 3395200 1887900 0 0 0 878410 551880 326530 0 0 0 25925 2245 27303 137896;137897;137898;137899;137900 138604;138605;138606;138607;138608 138608 5 NLPLADQGSSHHITVK IRRQIEHCEGRMTLKNLPLADQGSSHHITV LPLADQGSSHHITVKINELKSVQNDSQAIA K N L V K I 1 0 1 1 0 1 0 1 2 1 2 1 0 0 1 2 1 0 0 1 0 0 16 0 1715.8955 P15924 P15924 690 705 DSP Desmoplakin yes yes 2;3;4 1.0987E-06 73.166 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 3 9 3 4 0.63042 0.64168 95.187 25 Median 0.65714 0.6395 56.791 6 0 Median 0.83578 0.73474 7.0359 3 0 Median 0.39307 0.41941 22.445 3 0 Median 0.52062 0.51713 151.03 7 2 Median 0.62726 0.65681 3.2956 2 0 Median 1.0162 0.8415 10.474 4 1 Median 207740000 124010000 83726000 40807000 25664000 15144000 48509000 25809000 22700000 29811000 19306000 10504000 33095000 22787000 10309000 34181000 20123000 14058000 21332000 10322000 11011000 25926 2021 27304 137901;137902;137903;137904;137905;137906;137907;137908;137909;137910;137911;137912;137913;137914;137915;137916;137917;137918;137919;137920;137921;137922;137923;137924;137925;137926;137927;137928 138609;138610;138611;138612;138613;138614;138615;138616;138617;138618;138619;138620;138621;138622;138623;138624;138625;138626;138627;138628;138629;138630;138631;138632;138633;138634;138635;138636;138637 138635 29 NLPLGWDGKPIPYWLYK SESEDEENEIIYNPKNLPLGWDGKPIPYWL PLGWDGKPIPYWLYKLHGLNINYNCEICGN K N L Y K L 0 0 1 1 0 0 0 2 0 1 3 2 0 0 3 0 0 2 2 0 0 0 17 1 2059.0931 Q12874 Q12874 382 398 SF3A3 Splicing factor 3A subunit 3 yes yes 3 0.025215 17.281 By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 0.68976 0.67827 18.689 6 Median 0.83017 0.79216 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65021 0.68091 NaN 1 0 Median 0.73172 0.67564 NaN 1 0 Median 0.57202 0.60537 0.007307 2 0 Median 1.1061 0.98582 NaN 1 0 Median 10810000 6389800 4420100 1598200 925580 672600 0 0 0 4895500 2787700 2107800 101630 45018 56616 4164200 2609700 1554500 50404 21786 28618 25927 2767 27305 137929;137930;137931;137932;137933;137934 138638;138639;138640;138641 138638 4 NLPLPPPPPPR PPPPGRGGRGGSRARNLPLPPPPPPRGGDL SRARNLPLPPPPPPRGGDLMAYDRRGRPGD R N L P R G 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 0 0 0 0 0 0 11 0 1193.6921 P61978;Q5T6W2 P61978 306 316 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 4.5433E-06 133.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 7 7 3 3 0.39245 0.34363 21.297 20 Median 0.35129 0.33283 NaN 1 0 Median 0.50151 0.43338 24.411 2 0 Median 0.32115 0.31701 24.275 5 2 Median 0.45901 0.39731 17.74 6 0 Median 0.25379 0.25539 9.8892 3 0 Median 0.4284 0.36807 9.468 3 1 Plateau 487320000 356650000 130670000 14884000 10523000 4360700 4095500 2666000 1429600 314080000 228590000 85489000 52164000 36560000 15604000 87446000 68105000 19340000 14653000 10209000 4444400 25928 2565;3093 27306 137935;137936;137937;137938;137939;137940;137941;137942;137943;137944;137945;137946;137947;137948;137949;137950;137951;137952;137953;137954;137955;137956;137957 138642;138643;138644;138645;138646;138647;138648;138649;138650;138651;138652;138653;138654;138655;138656;138657;138658;138659;138660;138661;138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672;138673;138674;138675;138676;138677;138678;138679;138680;138681;138682;138683;138684;138685;138686;138687;138688;138689;138690;138691;138692;138693;138694;138695;138696;138697;138698;138699;138700;138701;138702;138703;138704;138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715;138716;138717;138718;138719;138720;138721;138722;138723;138724 138667 83 NLPPEEQMISALPDIK NLSRAIGDHFYKRNKNLPPEEQMISALPDI LPPEEQMISALPDIKVLTLTDDHEFMVIAC K N L I K V 1 0 1 1 0 1 2 0 0 2 2 1 1 0 3 1 0 0 0 0 0 0 16 0 1793.9233 O15355 O15355 410 425 PPM1G Protein phosphatase 1G yes yes 2 0.036776 23.749 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.67153 0.66239 10.147 4 Median 0.67261 0.63928 NaN 1 0 Median 0.67046 0.58161 NaN 1 0 Median 0.64472 0.68634 NaN 1 0 Median 0.85411 0.73764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10163000 5966000 4197000 7236000 4252000 2984100 1119900 684330 435580 1616700 943520 673180 190320 86176 104140 0 0 0 0 0 0 25929 1538 27307 137958;137959;137960;137961 138725;138726;138727;138728;138729 138729 5 NLPPSGAVPVTGIPPHVVK QEDLRTFSWASVTSKNLPPSGAVPVTGIPP SGAVPVTGIPPHVVKVPASQPRPESKPESQ K N L V K V 1 0 1 0 0 0 0 2 1 1 1 1 0 0 5 1 1 0 0 4 0 0 19 0 1878.0727 Q13283 Q13283 258 276 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 0.00063519 30.438 By MS/MS By matching By MS/MS By MS/MS 3 2 2 1 0.44346 0.43251 8.9888 8 Median 0.4549 0.43323 6.2712 3 0 Median 0.49743 0.43337 17.756 2 0 Median 0.43789 0.44219 3.368 2 0 Median 0.44434 0.38147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41444000 29399000 12044000 27954000 19997000 7957500 2960600 2097000 863650 9482500 6604300 2878200 1046500 701460 345000 0 0 0 0 0 0 25930 2803 27308 137962;137963;137964;137965;137966;137967;137968;137969 138730;138731;138732;138733;138734;138735;138736;138737;138738;138739;138740 138733 11 NLPSSAQPFIPK SASPANTTVSTIKGRNLPSSAQPFIPKSFN KGRNLPSSAQPFIPKSFNYSPNSSTSEVSS R N L P K S 1 0 1 0 0 1 0 0 0 1 1 1 0 1 3 2 0 0 0 0 0 0 12 0 1297.703 Q5VT52 Q5VT52 577 588 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.028681 28.958 By MS/MS 1 0.44634 0.49327 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44634 0.49327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10002000 7021800 2980400 0 0 0 0 0 0 10002000 7021800 2980400 0 0 0 0 0 0 0 0 0 25931 3110 27309 137970 138741 138741 1 NLPVNFEVAR NKSEISQVFEIALKRNLPVNFEVARESGPP IALKRNLPVNFEVARESGPPHMKNFVTKVS R N L A R E 1 1 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 10 0 1157.6193 O95793;A0A087X1A5;Q5JW30 O95793 197 206 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 0.0035251 67.993 By MS/MS By matching By matching By matching By MS/MS 1 2 1 1 2 0.98873 0.92355 12.67 6 Median 0.94193 0.90782 NaN 1 0 Median 0.97968 0.85654 20.076 2 0 Median 0.90969 0.93955 NaN 1 0 Median 1.0379 0.90028 NaN 1 0 Median 1.0853 1.0898 NaN 1 1 Median NaN NaN NaN 0 0 Median 20391000 9780300 10610000 6499600 3171500 3328000 2837100 1382600 1454500 4713200 2172300 2541000 663110 301990 361110 5677600 2751900 2925700 0 0 0 25932 1794 27310 137971;137972;137973;137974;137975;137976;137977 138742;138743;138744 138742 3 NLPVPVYLRPLDEK KYKQVTNGQGENKMKNLPVPVYLRPLDEKD KNLPVPVYLRPLDEKDTSMKLWCAVGVNLS K N L E K D 0 1 1 1 0 0 1 0 0 0 3 1 0 0 3 0 0 0 1 2 0 0 14 1 1651.9297 A0A087X2D8;O60271 A0A087X2D8 659 672 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 0.0028177 35.037 By MS/MS By MS/MS 1 2 0.80326 0.77884 9.5992 3 Median 0.64882 0.66802 NaN 1 0 Median 0.82898 0.7879 1.6342 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10473000 6235500 4237500 4863700 3118800 1744900 5609300 3116700 2492600 0 0 0 0 0 0 0 0 0 0 0 0 25933 134 27311 137978;137979;137980 138745;138746 138745 2 NLPWLFTFNVK KNWLDPAKEIKRQLRNLPWLFTFNVKFYPP RQLRNLPWLFTFNVKFYPPDPSQLTEDITR R N L V K F 0 0 2 0 0 0 0 0 0 0 2 1 0 2 1 0 1 1 0 1 0 0 11 0 1377.7445 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 285 295 EPB41L2 Band 4.1-like protein 2 yes no 2 0.015509 36.693 By matching By matching By MS/MS 1 2 2 0.84022 0.87166 18.162 5 Median 1.0227 1.0172 NaN 1 0 Median 0.94464 0.81261 17.102 2 0 Median 0.71199 0.7539 20.527 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6443200 3397400 3045800 2221100 1062200 1158900 900380 504440 395940 3321700 1830700 1491000 0 0 0 0 0 0 0 0 0 25934 1573 27312 137981;137982;137983;137984;137985 138747 138747 1 NLPYVYIPSK PIEVYCHLPVMCEDRNLPYVYIPSKTDLGA MCEDRNLPYVYIPSKTDLGAAAGSKRPTCV R N L S K T 0 0 1 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 2 1 0 0 10 0 1192.6492 Q9NX24;D6RC52;D6RCB9;H0YC83 Q9NX24 102 111 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2 0.0030112 58.246 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.97625 0.78951 24.454 5 Median 0.81975 0.77513 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71799 0.67363 NaN 1 0 Median 0.97625 0.80849 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2521 1.0061 34.284 2 0 Median 64243000 37234000 27009000 4011700 2036800 1974900 0 0 0 55871000 33057000 22814000 2608700 1287200 1321500 0 0 0 1751100 852790 898280 25935 4156 27313 137986;137987;137988;137989;137990 138748;138749;138750;138751;138752;138753 138751 6 NLPYVYIPSKTDLGAAAGSK PIEVYCHLPVMCEDRNLPYVYIPSKTDLGA YIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ R N L S K R 3 0 1 1 0 0 0 2 0 1 2 2 0 0 2 2 1 0 2 1 0 0 20 1 2064.0892 Q9NX24 Q9NX24 102 121 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 3 0.0028068 36.523 By MS/MS 1 0.3623 0.41653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3623 0.41653 NaN 1 1 Median NaN NaN NaN 0 0 Median 7067500 4697800 2369600 0 0 0 0 0 0 0 0 0 0 0 0 7067500 4697800 2369600 0 0 0 25936 4156 27314 137991 138754 138754 1 NLQAHYEDFLQDSR KLRSSAPGECHQIMKNLQAHYEDFLQDSRD KNLQAHYEDFLQDSRDSVLFSVADRLRLEE K N L S R D 1 1 1 2 0 2 1 0 1 0 2 0 0 1 0 1 0 0 1 0 0 0 14 0 1734.7962 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 987 1000 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 4.8642E-05 79.004 By MS/MS By matching By MS/MS 1 1 1 0.86167 0.93169 9.6608 3 Median 0.86167 0.84541 NaN 1 0 Median 1.2073 1.0256 NaN 1 0 Median 0.8551 0.93169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17638000 9163700 8474800 10586000 5871100 4715300 3490200 1407000 2083200 3561900 1885600 1676300 0 0 0 0 0 0 0 0 0 25937 1220 27315 137992;137993;137994 138755;138756;138757;138758 138756 4 NLQDAMQVCR LLRGASKEILSEVERNLQDAMQVCRNVLLD SEVERNLQDAMQVCRNVLLDPQLVPGGGAS R N L C R N 1 1 1 1 1 2 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1233.5594 P49368;B4DUR8 P49368 390 399 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00068052 111.04 By MS/MS 1 1.6823 1.4556 NaN 1 Median NaN NaN NaN 0 0 Median 1.6823 1.4556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9675500 3929000 5746600 0 0 0 9675500 3929000 5746600 0 0 0 0 0 0 0 0 0 0 0 0 25938 2379 27316 137995 138759 138759 1 NLQDLVR ALKMVKGSIDRMFDKNLQDLVRGIRNHKED SIDRMFDKNLQDLVRGIRNHKEDEAKYISQ K N L V R G 0 1 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 O14617 O14617 17 23 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.044246 43 By MS/MS 1 1.3921 1.1881 NaN 1 Median NaN NaN NaN 0 0 Median 1.3921 1.1881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3139200 1298800 1840400 0 0 0 3139200 1298800 1840400 0 0 0 0 0 0 0 0 0 0 0 0 25939 1485 27317 137996 138760 138760 1 NLQDVVER DALDPNAYEAFKASRNLQDVVERVLHNAQE EAFKASRNLQDVVERVLHNAQEVEKEPGQR R N L E R V 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 971.50361 P49916;K7ERZ5;K7EQB6 P49916 446 453 LIG3 DNA ligase 3 yes no 2 0.0038087 85.212 By MS/MS By MS/MS 1 2 1.053 0.95426 6.809 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89962 0.95426 NaN 1 0 Median 1.1191 0.95735 9.6257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20550000 10704000 9846100 0 0 0 0 0 0 13621000 7464500 6156800 6928800 3239400 3689300 0 0 0 0 0 0 25940 2406 27318 137997;137998;137999 138761;138762;138763;138764;138765;138766 138762 6 NLQEAEEWYK ALRDVRQQYESVAAKNLQEAEEWYKSKFAD SVAAKNLQEAEEWYKSKFADLSEAANRNND K N L Y K S 1 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 10 0 1308.5986 P08670;B0YJC4;B0YJC5;H7C5W5;P41219;F8W835 P08670 283 292 VIM;PRPH Vimentin;Peripherin yes no 2 0.00037009 112.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 4 4 1.1222 1.0478 15.753 15 Median 1.0248 0.93748 NaN 1 0 Median 1.3504 1.1405 NaN 1 0 Median 1.1045 1.0606 1.7212 2 0 Median 1.2368 1.0406 9.8963 3 0 Median 1.1433 1.1316 15.698 4 0 Median 0.98005 0.80335 16.732 4 0 Median 625250000 290960000 334290000 94596000 46501000 48095000 40653000 15678000 24975000 95391000 45470000 49921000 45941000 20653000 25288000 259940000 119580000 140360000 88731000 43082000 45649000 25941 1907 27319 138000;138001;138002;138003;138004;138005;138006;138007;138008;138009;138010;138011;138012;138013;138014 138767;138768;138769;138770;138771;138772;138773;138774;138775;138776;138777;138778;138779;138780;138781;138782;138783 138780 17 NLQEEIDALESR HSQEETQEMLEEAKKNLQEEIDALESRVES AKKNLQEEIDALESRVESIQRVLADLKVQL K N L S R V 1 1 1 1 0 1 3 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1415.6892 E9PQY2;Q9NQP4 E9PQY2 93 104 PFDN4 Prefoldin subunit 4 yes no 2 3.5722E-06 107.83 By MS/MS By matching 1 2 1.2896 1.2826 85.016 3 Median 1.2896 1.2664 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.7125 2.6696 103.67 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14979000 6073500 8905500 6638700 3020200 3618500 0 0 0 8340300 3053300 5287000 0 0 0 0 0 0 0 0 0 25942 982 27320 138015;138016;138017 138784;138785 138784 2 NLQEFLGGLSPGVLDR STPSRGLNRVHLQCRNLQEFLGGLSPGVLD LQEFLGGLSPGVLDRLYGHPATCLAVFREL R N L D R L 0 1 1 1 0 1 1 3 0 0 4 0 0 1 1 1 0 0 0 1 0 0 16 0 1713.905 Q92759;A0A0G2JHJ2 Q92759 18 33 GTF2H4 General transcription factor IIH subunit 4 yes no 2 5.8317E-10 114.82 By MS/MS By MS/MS 1 1 0.87197 0.80634 0.31511 2 Median NaN NaN NaN 0 0 Median 0.92777 0.80814 NaN 1 1 Median 0.81953 0.80455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18136000 10238000 7897600 0 0 0 1193300 670670 522680 16943000 9567800 7374900 0 0 0 0 0 0 0 0 0 25943 3553 27321 138018;138019 138786;138787;138788 138786 3 NLQEGNEVDSQSSIR RLLRITKRTGMKEEKNLQEGNEVDSQSSIR NLQEGNEVDSQSSIRTEAKEASGETTGVDI K N L I R T 0 1 2 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 15 0 1674.7809 O75152;E9PQ61 O75152 522 536 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 1.6904E-10 154.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.03 0.87581 13.4 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0892 1.1602 NaN 1 0 Median 1.0528 0.9011 4.0254 2 0 Median 0.81937 0.8657 NaN 1 0 Median 1.0135 0.82481 NaN 1 0 Median 16761000 8059700 8700900 0 0 0 0 0 0 6440100 3234000 3206100 4890400 2356100 2534300 3425300 1497700 1927600 2004800 971900 1032900 25944 1650 27322 138020;138021;138022;138023;138024 138789;138790;138791;138792;138793;138794;138795;138796;138797 138795 9 NLQEGQVTDPR KDDTTTKRWLAQLVKNLQEGQVTDPRGIPL QLVKNLQEGQVTDPRGIPLPPQ________ K N L P R G 0 1 1 1 0 2 1 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1255.6157 Q92600 Q92600 282 292 RQCD1 Cell differentiation protein RCD1 homolog yes yes 2 0.0035033 49.715 By MS/MS 1 0.7303 0.70066 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7303 0.70066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6048200 3216600 2831600 0 0 0 0 0 0 6048200 3216600 2831600 0 0 0 0 0 0 0 0 0 25945 3542 27323 138025 138798;138799 138799 2 NLQEIQQAGER AAETEGISELPHVERNLQEIQQAGERLRSR HVERNLQEIQQAGERLRSRTLTRTSQETAD R N L E R L 1 1 1 0 0 3 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1284.6422 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BV11 Q8N1F7 32 42 NUP93 Nuclear pore complex protein Nup93 yes no 2 1.0444E-21 198.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 3 1.2783 1.1063 27.289 9 Median 1.0427 1.01 NaN 1 1 Median 1.2783 1.1063 NaN 1 0 Median 0.93127 0.99637 3.7469 2 1 Median 1.3084 1.1278 NaN 1 0 Median 1.3432 1.4083 NaN 1 1 Median 1.5993 1.2994 46.498 3 0 Median 77851000 36135000 41716000 3574000 1566600 2007400 5232700 1943600 3289200 40905000 20268000 20637000 18542000 8284300 10258000 4577000 2208900 2368000 5020100 1863900 3156300 25946 3356 27324 138026;138027;138028;138029;138030;138031;138032;138033;138034 138800;138801;138802;138803;138804;138805;138806;138807;138808;138809;138810;138811;138812;138813;138814 138809 15 NLQEQTVQLQSELSR ENLQKTLSEKETEARNLQEQTVQLQSELSR NLQEQTVQLQSELSRLRQDLQDRTTQEEQL R N L S R L 0 1 1 0 0 4 2 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 15 0 1771.9064 P12270 P12270 1513 1527 TPR Nucleoprotein TPR yes yes 2;3 5.2472E-139 290.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 1 0.97414 0.98995 14.336 13 Median 0.99117 0.97219 2.5606 2 0 Median 1.2928 1.1248 10.69 3 0 Median 0.91568 0.96732 5.8182 4 0 Median 1.3977 1.2231 30.233 3 0 Plateau 0.92512 0.96634 NaN 1 0 Median NaN NaN NaN 0 0 Median 118850000 59280000 59570000 27719000 13802000 13917000 4974400 2153500 2821000 78004000 39623000 38381000 2917000 1233300 1683700 5235000 2467900 2767000 0 0 0 25947 1978 27325 138035;138036;138037;138038;138039;138040;138041;138042;138043;138044;138045;138046;138047 138815;138816;138817;138818;138819;138820;138821;138822;138823;138824;138825;138826;138827;138828;138829;138830;138831;138832 138825 18 NLQEQVMAVTAQVK GVLESDLPSAVTLLKNLQEQVMAVTAQVKS KNLQEQVMAVTAQVKSLTQKVQAGAYPTEK K N L V K S 2 0 1 0 0 3 1 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 14 0 1557.8185 Q8NEJ9;H0YJ17 Q8NEJ9 20 33 NGDN Neuroguidin yes no 2 7.6282E-08 100.55 By MS/MS 1 1.0745 1.078 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0745 1.078 NaN 1 0 Median NaN NaN NaN 0 0 Median 30893000 14299000 16594000 0 0 0 0 0 0 0 0 0 0 0 0 30893000 14299000 16594000 0 0 0 25948 3430 27326 138048 138833;138834 138834 2 NLQEVLGEEK GDAPSPEEKLHLITRNLQEVLGEEKLKEIL HLITRNLQEVLGEEKLKEILKERELKIYWG R N L E K L 0 0 1 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1157.5928 P54577;A0A0C4DGZ5 P54577 17 26 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00014291 116.05 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.2493 1.0778 18.493 4 Median NaN NaN NaN 0 0 Median 1.1598 0.97044 NaN 1 1 Median 1.0427 1.0869 28.371 2 0 Median 1.4046 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29479000 13194000 16285000 0 0 0 13828000 6288000 7539800 13093000 5872800 7220200 2558600 1033100 1525500 0 0 0 0 0 0 25949 2482 27327 138049;138050;138051;138052;138053;138054;138055 138835;138836;138837;138838;138839;138840;138841;138842 138836 8 NLQGFLEQPK LYVLNTTRATSREEKNLQGFLEQPKEKWVE SREEKNLQGFLEQPKEKWVESAFEVDGPYY K N L P K E 0 0 1 0 0 2 1 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 10 0 1172.619 Q5T4S7;X6R960;Q5TBN9 Q5T4S7 5013 5022 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0029636 70.919 By MS/MS 2 0.90685 0.79089 2.0816 2 Median NaN NaN NaN 0 0 Median 0.90685 0.79089 2.0816 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9105000 5274000 3831000 0 0 0 9105000 5274000 3831000 0 0 0 0 0 0 0 0 0 0 0 0 25950 3089 27328 138056;138057 138843;138844 138843 2 NLQLFMENK IRYYNKVPVEKRVFKNLQLFMENKQPEDDL EKRVFKNLQLFMENKQPEDDLFDRLNTGIL K N L N K Q 0 0 2 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1135.5696 P11387;Q969P6;E5RIC7 P11387 550 558 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0025948 70.919 By MS/MS By matching By matching 2 3 1 1.1862 1.1021 6.8688 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0826 1.1692 1.1814 2 1 Median 1.2462 1.0443 8.0188 3 0 Median NaN NaN NaN 0 0 Median 1.2623 1.0475 NaN 1 0 Median 72810000 34271000 38540000 0 0 0 0 0 0 70616000 33331000 37285000 1091800 443680 648100 0 0 0 1102800 496190 606640 25951 1962 27329;27330 138058;138059;138060;138061;138062;138063 138845;138846;138847 138845 738 3 NLQLFMENKQPEDDLFDR IRYYNKVPVEKRVFKNLQLFMENKQPEDDL LFMENKQPEDDLFDRLNTGILNKHLQDLME K N L D R L 0 1 2 3 0 2 2 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 18 1 2251.0579 P11387 P11387 550 567 TOP1 DNA topoisomerase 1 yes yes 2;3 1.6157E-08 94.544 By MS/MS By matching 4 2 0.93594 1.0276 18.173 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8555 0.96891 10.39 4 1 Median 1.3007 1.2644 17.408 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38657000 20252000 18405000 0 0 0 0 0 0 38103000 20006000 18096000 553930 245100 308830 0 0 0 0 0 0 25952 1962 27331;27332 138064;138065;138066;138067;138068;138069 138848;138849;138850;138851;138852;138853;138854 138848 738 7 NLQLIQSIR PAPRAYLVPENFRERNLQLIQSIRDFLQSD ENFRERNLQLIQSIRDFLQSDEARFSEFKS R N L I R D 0 1 1 0 0 2 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1083.64 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 757 765 ZNF598 Zinc finger protein 598 yes no 2 0.0066958 53.775 By matching By matching By MS/MS By matching 1 1 2 3 1.1314 0.96423 25.317 7 Median 0.83889 0.83791 NaN 1 0 Median 0.87383 0.75603 NaN 1 0 Median 1.3884 1.4233 2.586 2 0 Median 1.1314 0.96423 8.82 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10051000 4650300 5400800 1493100 1020700 472450 1423200 666170 757070 5194200 2062200 3132100 1940400 901260 1039200 0 0 0 0 0 0 25953 3278 27333 138070;138071;138072;138073;138074;138075;138076 138855 138855 1 NLQLLMDR KHELLSLASSNHLGKNLQLLMDRVDEMSQD SSNHLGKNLQLLMDRVDEMSQDIVKYNTYM K N L D R V 0 1 1 1 0 1 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 8 0 1001.5328 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 256 263 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.00072089 98.997 By MS/MS By MS/MS 1 2 1.0943 1.1348 15.013 2 Median 1.0283 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1644 1.2619 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10089000 4977000 5111800 4849100 2451500 2397600 0 0 0 5239700 2525500 2714200 0 0 0 0 0 0 0 0 0 25954 584 27334 138077;138078;138079 138856;138857;138858 138857 3 NLQLLMDRVDEMSQDIVK KHELLSLASSNHLGKNLQLLMDRVDEMSQD LLMDRVDEMSQDIVKYNTYMRNTSKQQQQK K N L V K Y 0 1 1 3 0 2 1 0 0 1 3 1 2 0 0 1 0 0 0 2 0 0 18 1 2146.0762 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 256 273 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.0014778 40.577 By MS/MS 1 1.0424 0.97213 NaN 1 Median NaN NaN NaN 0 0 Median 1.0424 0.97213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 932230 432880 499340 0 0 0 932230 432880 499340 0 0 0 0 0 0 0 0 0 0 0 0 25955 584 27335 138080 138859 138859 1 NLQMWEEMK EQRIDSKHRKNPIEKNLQMWEEMKKGSQFG KNPIEKNLQMWEEMKKGSQFGQSCCLRAKI K N L M K K 0 0 1 0 0 1 2 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 9 0 1207.5366 P07814;V9GYZ6 P07814 319 327 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0074886 51.346 By MS/MS By matching 1 1 1.1546 1.0661 13.761 2 Median 1.2228 1.175 NaN 1 0 Median 1.0901 0.96723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7401700 3605000 3796800 4767900 2281800 2486100 2633800 1323100 1310700 0 0 0 0 0 0 0 0 0 0 0 0 25956 1892 27336 138081;138082 138860 138860 1 NLQMWEEMKK EQRIDSKHRKNPIEKNLQMWEEMKKGSQFG NPIEKNLQMWEEMKKGSQFGQSCCLRAKID K N L K K G 0 0 1 0 0 1 2 0 0 0 1 2 2 0 0 0 0 1 0 0 0 0 10 1 1335.6315 P07814;V9GYZ6 P07814 319 328 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 0.00028407 122.52 By MS/MS By MS/MS 2 2 1.2366 1.1838 14.874 4 Median 1.0779 1.0299 8.2565 2 0 Median 1.3589 1.3119 3.0844 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43763000 19946000 23818000 35766000 16889000 18877000 7997300 3056600 4940700 0 0 0 0 0 0 0 0 0 0 0 0 25957 1892 27337 138083;138084;138085;138086 138861;138862;138863;138864;138865;138866;138867 138863 7 NLQNLLILTAIK LEKIVLDNSVFSEHRNLQNLLILTAIKADR EHRNLQNLLILTAIKADRTRVMEYINRLDN R N L I K A 1 0 2 0 0 1 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 12 0 1352.8391 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 1027 1038 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 3.2326E-06 111.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 3 1 2 3 1.342 1.2382 8.9546 21 Median 1.3122 1.2911 5.1025 6 0 Median 1.3921 1.2109 10.269 6 0 Median 1.0095 1.0498 12.94 3 0 Median 1.4571 1.3152 NaN 1 0 Median 1.1956 1.199 8.0942 2 0 Median 1.4426 1.1867 5.4755 3 0 Median 496400000 211700000 284700000 83975000 35970000 48005000 392350000 166310000 226040000 7879400 3954000 3925400 3780600 1598600 2182000 3120800 1519200 1601700 5299500 2350300 2949200 25958 44 27338 138087;138088;138089;138090;138091;138092;138093;138094;138095;138096;138097;138098;138099;138100;138101;138102;138103;138104;138105;138106;138107 138868;138869;138870;138871;138872;138873;138874;138875;138876;138877;138878;138879;138880;138881;138882;138883;138884;138885;138886;138887;138888;138889;138890 138870 23 NLQNLLILTAIKADR LEKIVLDNSVFSEHRNLQNLLILTAIKADR NLQNLLILTAIKADRTRVMEYINRLDNYDA R N L D R T 2 1 2 1 0 1 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 15 1 1695.0043 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 1027 1041 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 3 0.064877 11.262 By MS/MS By matching 2 1 1.1672 1.1869 8.6813 3 Median 1.2225 1.2474 7.0287 2 0 Median 1.1549 1.1027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4154900 1790700 2364200 2424400 969320 1455100 1730500 821430 909070 0 0 0 0 0 0 0 0 0 0 0 0 25959 44 27339 138108;138109;138110 138891 138891 1 NLQNVDMK SSETPDQFMTADETRNLQNVDMKIGV____ MTADETRNLQNVDMKIGV____________ R N L M K I 0 0 2 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 8 0 960.46987 H0YD13;H0Y2P0;P16070;H0YE40 H0YD13 196 203 CD44 CD44 antigen yes no 2 0.024653 43.246 By MS/MS 1 0.95861 0.84648 NaN 1 Median NaN NaN NaN 0 0 Median 0.95861 0.84648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2333500 1184100 1149400 0 0 0 2333500 1184100 1149400 0 0 0 0 0 0 0 0 0 0 0 0 25960 1139 27340 138111 138892 138892 1 NLQQQYLQINQEITELHPLK SSLQNDRDRLLKELKNLQQQYLQINQEITE YLQINQEITELHPLKAQLQEYQDKTKAFQI K N L L K A 0 0 2 0 0 5 2 0 1 2 4 1 0 0 1 0 1 0 1 0 0 0 20 0 2449.2965 Q14789 Q14789 2899 2918 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.0004284 30.152 By MS/MS By matching 1 1 1.0236 0.95377 6.6262 2 Median 1.0076 0.99952 NaN 1 0 Median 1.0399 0.91011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9162800 4622200 4540600 2891600 1617000 1274600 6271200 3005200 3266000 0 0 0 0 0 0 0 0 0 0 0 0 25961 2900 27341 138112;138113 138893 138893 1 NLQSDVLMTVVK LSSVSHIVLDEIHERNLQSDVLMTVVKDLL HERNLQSDVLMTVVKDLLNFRSDLKVILMS R N L V K D 0 0 1 1 0 1 0 0 0 0 2 1 1 0 0 1 1 0 0 3 0 0 12 0 1345.7275 Q9H2U1;E7EWK3 Q9H2U1 340 351 DHX36 ATP-dependent RNA helicase DHX36 yes no 2 0.012077 36.334 By matching By MS/MS By matching By matching By matching 2 2 3 1 1 1.0311 0.9286 10.25 9 Median NaN NaN NaN 0 0 Median 1.0737 0.93158 7.3718 2 0 Median 0.83133 0.85993 10.345 2 0 Median 1.143 1.0068 13.363 3 0 Median 1.016 1.0483 NaN 1 0 Median 1.133 0.9286 NaN 1 0 Median 10347000 4905200 5441900 0 0 0 4394500 2037000 2357600 2605700 1306700 1299000 884730 434110 450620 2290300 1052600 1237800 171780 74827 96957 25962 902 27342 138114;138115;138116;138117;138118;138119;138120;138121;138122 138894 138894 1 NLQSEVEGVK ______________________________ NDRVRNLQSEVEGVKNIMTQNVERILARGE R N L V K N 0 0 1 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 0 1101.5666 Q9BV40;B8ZZT4 Q9BV40 15 24 VAMP8 Vesicle-associated membrane protein 8 yes no 2 0.00040842 109.71 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.5235 1.3607 39.263 4 Linear 1.1851 1.0737 NaN 1 0 Median 1.4899 1.221 NaN 1 0 Median 1.0525 1.0185 NaN 1 1 Median 0.60766 0.50967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104790000 43483000 61308000 22576000 9814500 12761000 77063000 31034000 46029000 4918400 2506100 2412400 232810 127430 105380 0 0 0 0 0 0 25963 3845 27343 138123;138124;138125;138126;138127 138895;138896;138897;138898;138899;138900;138901 138896 7 NLQSFGTEEPAYSTR SARLSQSSQDSSPVRNLQSFGTEEPAYSTR NLQSFGTEEPAYSTRRVTRSQQQPTPVTPK R N L T R R 1 1 1 0 0 1 2 1 0 0 1 0 0 1 1 2 2 0 1 0 0 0 15 0 1698.7849 O95251 O95251 61 75 KAT7 Histone acetyltransferase KAT7 yes yes 2 1.7952E-09 153.63 By MS/MS By MS/MS 1 1 0.80849 0.83153 15.866 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72972 0.74328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89577 0.93025 NaN 1 0 Median NaN NaN NaN 0 0 Median 17039000 9005000 8034300 0 0 0 0 0 0 11145000 6548800 4596600 0 0 0 5893900 2456200 3437700 0 0 0 25964 1759 27344 138128;138129 138902;138903;138904;138905 138905 4 NLQSVVLSK KTQGVIKYMGPAGAKNLQSVVLSKMNFESF GPAGAKNLQSVVLSKMNFESFVKDLLLVRQ K N L S K M 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 9 0 986.57605 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8;C9J809 P43246 74 82 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.0015606 80.165 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1 1.1904 1.1118 15.583 8 Median 1.0571 1.0217 NaN 1 0 Median 1.3813 1.1883 4.8103 2 0 Median 1.0107 1.0917 NaN 1 0 Median 1.2887 1.1322 18.174 3 0 Plateau NaN NaN NaN 0 0 Median 1.5599 1.2908 NaN 1 0 Median 72318000 33932000 38386000 13734000 6683300 7051000 15719000 6377900 9340600 27830000 14306000 13524000 13696000 5993700 7702200 0 0 0 1339100 571550 767540 25965 2324 27345 138130;138131;138132;138133;138134;138135;138136;138137 138906;138907;138908;138909;138910;138911;138912;138913 138913 8 NLQTVNVDEN KLYTLVTYVPVTTFKNLQTVNVDEN_____ VTTFKNLQTVNVDEN_______________ K N L E N - 0 0 3 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1144.536 P62899 P62899 116 125 RPL31 60S ribosomal protein L31 yes yes 2 0.0010612 88.294 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171410000 0 0 140550000 0 0 30864000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25966 2607 27346 138138;138139;138140 138914;138915;138916 138916 3 NLQTYLQEEDTR SDKNSSVNLKIQVLKNLQTYLQEEDTRMQQ VLKNLQTYLQEEDTRMQQADRDWKKVAKQE K N L T R M 0 1 1 1 0 2 2 0 0 0 2 0 0 0 0 0 2 0 1 0 0 0 12 0 1508.7107 A0A590UJS4;Q6KC79 A0A590UJS4 2236 2247 NIPBL Nipped-B-like protein yes no 2 6.993E-06 159.4 By MS/MS By MS/MS By matching 2 1 1 0.9291 0.96161 5.6553 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89508 0.96161 3.058 2 0 Median NaN NaN NaN 0 0 Median 0.96087 0.98565 NaN 1 0 Median 1.0602 0.873 NaN 1 0 Median 33351000 17409000 15942000 0 0 0 0 0 0 20044000 10413000 9631200 0 0 0 13007000 6854100 6152900 300080 141930 158150 25967 488 27347 138141;138142;138143;138144 138917;138918;138919;138920;138921;138922 138919 6 NLQYYDISAK DRKVKAKSIVFHRKKNLQYYDISAKSNYNF FHRKKNLQYYDISAKSNYNFEKPFLWLARK K N L A K S 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 10 0 1213.5979 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 160 169 RAN GTP-binding nuclear protein Ran yes no 2 0.00033784 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 3 3 2 1.2681 1.1279 45.886 16 Median 1.1486 1.0527 34.481 3 1 Median 1.4719 1.3114 71.006 5 2 Median 1.2 1.1416 6.4278 2 0 Median 1.3013 1.0555 32.957 3 0 Median 1.2556 1.3086 16.306 2 0 Median 1.2715 1.0443 NaN 1 0 Median 1910800000 855480000 1055300000 507120000 223420000 283700000 130140000 55505000 74631000 919630000 419310000 500330000 165750000 71393000 94356000 136950000 63907000 73044000 51187000 21949000 29238000 25968 623 27348 138145;138146;138147;138148;138149;138150;138151;138152;138153;138154;138155;138156;138157;138158;138159;138160;138161;138162 138923;138924;138925;138926;138927;138928;138929;138930;138931;138932;138933;138934;138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945;138946;138947;138948;138949;138950;138951 138932 29 NLRDIDEVSSLLR KAHEILPNLVCCSAKNLRDIDEVSSLLRTS AKNLRDIDEVSSLLRTSIMSKQYGNEVFLA K N L L R T 0 2 1 2 0 0 1 0 0 1 3 0 0 0 0 2 0 0 0 1 0 0 13 1 1528.8209 P50990;H7C4C8 P50990 153 165 CCT8 T-complex protein 1 subunit theta yes no 3 0.0066644 30.483 By MS/MS By matching 1 1 1.1849 1.1058 0.95395 2 Median 1.13 1.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2424 1.0984 NaN 1 0 Median 3734000 1746600 1987400 3499800 1648400 1851400 0 0 0 0 0 0 0 0 0 0 0 0 234200 98269 135930 25969 2423 27349 138163;138164 138952;138953 138953 2 NLRPGDSQTAAQAR ALAALARGTPLLAVRNLRPGDSQTAAQARD RNLRPGDSQTAAQARDQTAALLNSAGLGAA R N L A R D 3 2 1 1 0 2 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 14 1 1483.7492 Q8WZA9;M0QZP8 Q8WZA9 115 128 IRGQ Immunity-related GTPase family Q protein yes no 3 0.0077808 26.682 By MS/MS 1 0.83219 0.7558 NaN 1 Median NaN NaN NaN 0 0 Median 0.83219 0.7558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1109700 560980 548760 0 0 0 1109700 560980 548760 0 0 0 0 0 0 0 0 0 0 0 0 25970 3526 27350 138165 138954 138954 1 NLSADQWR LSDALISLQMVYPRRNLSADQWRNAQLLSL QMVYPRRNLSADQWRNAQLLSLISAPSTML R N L W R N 1 1 1 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 8 0 988.47264 Q9Y2A7 Q9Y2A7 218 225 NCKAP1 Nck-associated protein 1 yes yes 2 0.042262 36.395 By MS/MS By matching 1 1 0.53907 0.49276 93.168 2 Median NaN NaN NaN 0 0 Median 1.1205 0.95225 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.25935 0.25499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4574600 2399400 2175200 0 0 0 3682800 1694900 1987900 0 0 0 891820 704520 187310 0 0 0 0 0 0 25971 4383 27351 138166;138167 138955 138955 1 NLSDSEKELYIQHAK DSPQEKLKTVKENWKNLSDSEKELYIQHAK NLSDSEKELYIQHAKEDETRYHNEMKSWEE K N L A K E 1 0 1 1 0 1 2 0 1 1 2 2 0 0 0 2 0 0 1 0 0 0 15 1 1773.8897 Q00059 Q00059 191 205 TFAM Transcription factor A, mitochondrial yes yes 2;3;4 7.9304E-09 113.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 1 3 1.0035 1.0484 17.063 12 Median 0.94159 0.95694 8.0191 2 0 Median NaN NaN NaN 0 0 Median 0.86898 0.89275 9.4558 4 0 Median 1.2981 1.1702 4.1883 2 0 Median 1.0095 1.0852 NaN 1 0 Median 1.3435 1.166 12.331 3 0 Median 229650000 107930000 121720000 31356000 14809000 16547000 0 0 0 117480000 57630000 59849000 36179000 15073000 21105000 24714000 12404000 12310000 19922000 8013900 11909000 25972 2673 27352 138168;138169;138170;138171;138172;138173;138174;138175;138176;138177;138178;138179;138180 138956;138957;138958;138959;138960;138961;138962;138963;138964;138965;138966;138967;138968;138969;138970 138960 15 NLSDSEKELYIQHAKEDETR DSPQEKLKTVKENWKNLSDSEKELYIQHAK EKELYIQHAKEDETRYHNEMKSWEEQMIEV K N L T R Y 1 1 1 2 0 1 4 0 1 1 2 2 0 0 0 2 1 0 1 0 0 0 20 2 2404.1506 Q00059 Q00059 191 210 TFAM Transcription factor A, mitochondrial yes yes 4 2.499E-09 83.213 By MS/MS By MS/MS By matching 1 1 1 0.83816 0.96556 36.288 3 Median 0.82402 0.8774 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0807 1.7162 NaN 1 0 Median 0.83816 0.96556 NaN 1 0 Median NaN NaN NaN 0 0 Median 13426000 6104500 7321300 6712300 3576100 3136200 0 0 0 0 0 0 5491800 1837900 3653900 1221700 690540 531170 0 0 0 25973 2673 27353 138181;138182;138183 138971;138972 138972 2 NLSDVATKQEGLESVLK SNSPRLVQNCLWTLRNLSDVATKQEGLESV SDVATKQEGLESVLKILVNQLSVDDVNVLT R N L L K I 1 0 1 1 0 1 2 1 0 0 3 2 0 0 0 2 1 0 0 2 0 0 17 1 1829.9735 P14923 P14923 378 394 JUP Junction plakoglobin yes yes 3 0.00015574 42.277 By matching By matching By MS/MS By matching 1 1 3 1 0.69152 0.7059 24.879 6 Median NaN NaN NaN 0 0 Median 0.91287 0.82907 NaN 1 0 Median 0.7274 0.8287 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47046 0.52877 30.287 3 0 Median 0.65741 0.6013 NaN 1 0 Median 14072000 8451800 5620100 0 0 0 634210 319820 314390 2119500 1228300 891170 0 0 0 11187000 6839100 4347500 131670 64610 67059 25974 2013 27354 138184;138185;138186;138187;138188;138189 138973 138973 1 NLSEAQLR INAQELGAALKATGKNLSEAQLRKLISEVD ALKATGKNLSEAQLRKLISEVDSDGDGEIS K N L L R K 1 1 1 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 929.49304 Q9NZT1 Q9NZT1 43 50 CALML5 Calmodulin-like protein 5 yes yes 2 8.2285E-09 133.81 By MS/MS 1 0.019567 0.014131 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.019567 0.014131 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11550000 11408000 141690 0 0 0 0 0 0 0 0 0 11550000 11408000 141690 0 0 0 0 0 0 25975 4194 27355 138190 138974 138974 1 NLSEAQLRK INAQELGAALKATGKNLSEAQLRKLISEVD LKATGKNLSEAQLRKLISEVDSDGDGEISF K N L R K L 1 1 1 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 1 1057.588 Q9NZT1 Q9NZT1 43 51 CALML5 Calmodulin-like protein 5 yes yes 2 0.02529 50.127 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2137100 2137100 0 0 0 0 0 0 0 0 0 0 2137100 2137100 0 0 0 0 0 0 0 25976 4194 27356 138191 138975 138975 1 NLSEEGLLR VSTKCCKKSIVRLVRNLSEEGLLRLYRTTV IVRLVRNLSEEGLLRLYRTTVIQDGIKKKV R N L L R L 0 1 1 0 0 0 2 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1029.5455 Q12789 Q12789 665 673 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 8.0451E-05 148.99 By MS/MS By MS/MS 1 1 0.82791 0.78819 14.088 2 Median NaN NaN NaN 0 0 Median 0.85801 0.71346 NaN 1 0 Median 0.79886 0.87076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27394000 13947000 13446000 0 0 0 1442200 741050 701160 25952000 13206000 12745000 0 0 0 0 0 0 0 0 0 25977 2758 27357 138192;138193 138976;138977 138976 2 NLSELQDTSLQQLVSQR TDEGKEINEKSSQLKNLSELQDTSLQQLVS SELQDTSLQQLVSQRHSTPQNKNAVSVHSN K N L Q R H 0 1 1 1 0 4 1 0 0 0 4 0 0 0 0 3 1 0 0 1 0 0 17 0 1958.0069 Q5QJE6;J3KP30 Q5QJE6 322 338 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 1.725E-07 74.46 By MS/MS 2 1.3874 1.4221 16.885 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3874 1.4221 16.885 2 2 Median NaN NaN NaN 0 0 Median 8472900 3734600 4738200 0 0 0 0 0 0 0 0 0 0 0 0 8472900 3734600 4738200 0 0 0 25978 3067 27358 138194;138195 138978;138979 138978 2 NLSESPVITK GGIKGIGKTSTNSSKNLSESPVITKAKEGC TNSSKNLSESPVITKAKEGCQSDSMRQEQS K N L T K A 0 0 1 0 0 0 1 0 0 1 1 1 0 0 1 2 1 0 0 1 0 0 10 0 1086.5921 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1227 1236 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.014855 38.754 By MS/MS By MS/MS By MS/MS 2 2 1 1.0441 1.1208 13.922 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93556 1.0219 18.381 2 0 Median 1.1016 1.0266 12.414 2 0 Median NaN NaN NaN 0 0 Median 1.4424 1.2362 NaN 1 0 Median 15488000 8306100 7181800 0 0 0 0 0 0 11857000 6424400 5432800 2372100 1235100 1137000 0 0 0 1258400 646540 611900 25979 2762 27359 138196;138197;138198;138199;138200 138980;138981;138982;138983;138984 138980 5 NLSFNELYPSGTLK EQEKLEAQDSGEEARNLSFNELYPSGTLKL RNLSFNELYPSGTLKLQYNFDTIDQQFCDL R N L L K L 0 0 2 0 0 0 1 1 0 0 3 1 0 1 1 2 1 0 1 0 0 0 14 0 1581.8039 Q8WYP5 Q8WYP5 1539 1552 AHCTF1 Protein ELYS yes yes 2 0.0082641 40.589 By MS/MS By matching 4 1 0.81147 0.82497 18.903 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80064 0.81568 21.464 4 1 Median 0.94754 0.83285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19636000 10536000 9099300 0 0 0 0 0 0 19470000 10451000 9018700 165960 85386 80574 0 0 0 0 0 0 25980 3524 27360 138201;138202;138203;138204;138205 138985;138986;138987 138986 3 NLSGQPNFPCR FVILPLNLVGTILGRNLSGQPNFPCRVNAV ILGRNLSGQPNFPCRVNAVPRPIPEKKWFM R N L C R V 0 1 2 0 1 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1288.5983 Q9HD45 Q9HD45 419 429 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 2 7.3501E-05 151.5 By MS/MS 2 0.81592 0.66719 11.952 2 Median NaN NaN NaN 0 0 Median 0.81592 0.66719 11.952 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14984000 8068500 6915100 0 0 0 14984000 8068500 6915100 0 0 0 0 0 0 0 0 0 0 0 0 25981 4037 27361 138206;138207 138988;138989;138990;138991 138990 4 NLSLSGHVGFDSLPDQLVNK ______________________________ GHVGFDSLPDQLVNKSTSQGFCFNILCVGE R N L N K S 0 0 2 2 0 1 0 2 1 0 4 1 0 1 1 3 0 0 0 2 0 0 20 0 2139.096 D6RGI3;D6RER5;Q9NVA2;D6RDU5;D6RDP1;D6R9Y6 D6RGI3 15 34 SEPT11 Septin-11 yes no 2;3 3.5129E-21 161.21 By matching By MS/MS By MS/MS 1 2 2 0.91333 0.87 12.086 5 Median 0.82169 0.82876 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91049 0.86689 0.50687 2 0 Median 1.1833 1.0593 3.7025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 184010000 92684000 91326000 1215400 731350 484090 0 0 0 172890000 87486000 85404000 9904900 4466600 5438400 0 0 0 0 0 0 25982 822 27362 138208;138209;138210;138211;138212 138992;138993;138994;138995;138996 138995 5 NLSNPEMTSGSDKINYTYMLTR EKQYFIEKLTATIWKNLSNPEMTSGSDKIN TSGSDKINYTYMLTRCIQACKTNPEYIYAP K N L T R C 0 1 3 1 0 0 1 1 0 1 2 1 2 0 1 3 3 0 2 0 0 0 22 1 2534.1781 O15226 O15226 184 205 NKRF NF-kappa-B-repressing factor yes yes 3 2.149E-12 71.174 By MS/MS 1 1.1358 1.2492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1358 1.2492 NaN 1 0 Median NaN NaN NaN 0 0 Median 8453300 2993200 5460100 0 0 0 0 0 0 0 0 0 0 0 0 8453300 2993200 5460100 0 0 0 25983 1532 27363 138213 138997;138998 138997 2 NLSPGAVESDVR DQTVRVWDISGLRKKNLSPGAVESDVRGIT RKKNLSPGAVESDVRGITGVDLFGTTDAVV K N L V R G 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 2 0 0 12 0 1242.6204 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IU78 P53621 171 182 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 1.5559E-07 137.98 By MS/MS By MS/MS By matching By MS/MS 3 2 1 2 0.83146 0.80701 51.385 8 Median 0.83782 0.81938 3.6233 3 2 Median 0.8192 0.68615 9.0229 2 0 Median 0.75074 0.86087 NaN 1 0 Median 0.52166 0.43693 113.24 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67066000 36051000 31015000 37824000 20684000 17140000 21198000 11352000 9846400 4586300 2317300 2269000 3457300 1697600 1759700 0 0 0 0 0 0 25984 2473 27364 138214;138215;138216;138217;138218;138219;138220;138221 138999;139000;139001;139002;139003;139004;139005;139006 139002 7 NLSPVVSNELLEQAFSQFGPVEK LRIRFATHGAALTVKNLSPVVSNELLEQAF ELLEQAFSQFGPVEKAVVVVDDRGRATGKG K N L E K A 1 0 2 0 0 2 3 1 0 0 3 1 0 2 2 3 0 0 0 3 0 0 23 0 2531.2908 Q8WXF1;X6RDA4 Q8WXF1 162 184 PSPC1 Paraspeckle component 1 yes no 2;3 4.6978E-23 102.28 By matching By matching By MS/MS By matching By matching 1 1 5 1 1 0.75435 0.76602 15.509 9 Median 0.8927 0.86314 NaN 1 0 Median 0.89503 0.81449 NaN 1 0 Median 0.73302 0.72316 16.007 5 0 Median 0.90393 0.78596 NaN 1 0 Median 0.59179 0.60785 NaN 1 0 Median NaN NaN NaN 0 0 Median 32793000 19680000 13112000 1896200 1029100 867140 212460 99046 113420 29183000 17620000 11563000 150020 80052 69969 1351100 852190 498910 0 0 0 25985 3520 27365 138222;138223;138224;138225;138226;138227;138228;138229;138230 139007;139008;139009;139010;139011;139012;139013 139012 7 NLSPYVSNELLEEAFSQFGPIER LRVRFATHAAALSVRNLSPYVSNELLEEAF ELLEEAFSQFGPIERAVVIVDDRGRSTGKG R N L E R A 1 1 2 0 0 1 4 1 0 1 3 0 0 2 2 3 0 0 1 1 0 0 23 0 2638.2915 P23246 P23246 377 399 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 3.7235E-05 38.028 By MS/MS By MS/MS 4 3 0.7365 0.78227 4.4592 7 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73832 0.77274 3.9477 4 0 Linear NaN NaN NaN 0 0 Median 0.7365 0.78227 5.7062 3 0 Median NaN NaN NaN 0 0 Median 4910700 2703600 2207100 0 0 0 0 0 0 1758300 939150 819150 0 0 0 3152400 1764500 1387900 0 0 0 25986 2107 27366 138231;138232;138233;138234;138235;138236;138237 139014;139015;139016;139017;139018;139019 139019 6 NLSSNEAISLEEIR KGFNKVVLKHLKKTKNLSSNEAISLEEIRI KNLSSNEAISLEEIRIRVVQMLGSLGGQIN K N L I R I 1 1 2 0 0 0 3 0 0 2 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1573.7948 P78527 P78527 839 852 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.6097E-55 237.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 2 1 0.91795 0.93528 93.383 12 Median 0.18796 0.1915 223.29 2 0 Median 1.3037 1.0746 4.5075 2 1 Median 0.91072 0.94193 7.7286 3 0 Median 1.0771 1.0413 27.556 2 0 Median 0.85231 0.8802 6.5161 2 0 Median 1.2872 1.0479 NaN 1 0 Median 341340000 204890000 136450000 93900000 81040000 12861000 29801000 13330000 16472000 186740000 94490000 92247000 6690000 2929900 3760100 22861000 12527000 10334000 1350100 574200 775860 25987 2647 27367 138238;138239;138240;138241;138242;138243;138244;138245;138246;138247;138248;138249 139020;139021;139022;139023;139024;139025;139026;139027;139028;139029;139030;139031;139032;139033 139023 14 NLSSQLQTGR VKEELHQLQCEWKTRNLSSQLQTGRDLEDE EWKTRNLSSQLQTGRDLEDEVVVSYSHPHV R N L G R D 0 1 1 0 0 2 0 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1102.5731 Q9NU22 Q9NU22 3269 3278 MDN1 Midasin yes yes 2 0.0010552 88.37 By MS/MS By MS/MS 1 1 1.2344 1.1963 16.297 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98749 1.0661 NaN 1 1 Median 1.5431 1.3425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5324400 2848200 2476200 0 0 0 0 0 0 4510100 2487400 2022700 814310 360790 453520 0 0 0 0 0 0 25988 4112 27368 138250;138251 139034;139035 139034 2 NLSTFAVDGK NHDAAIFPGGFGAAKNLSTFAVDGKDCKVN FGAAKNLSTFAVDGKDCKVNKEVERVLKEF K N L G K D 1 0 1 1 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 1 0 0 10 0 1050.5346 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3;A0A096LP73;A0A2R8YDR7;F2Z2Q0;A0A096LP12 A0A096LPI6 153 162 C21orf33 yes no 2 0.0023116 60.717 By MS/MS 1 1.0741 1.0029 NaN 1 Median 1.0741 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12713000 6474100 6239000 12713000 6474100 6239000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25989 144 27369 138252 139036 139036 1 NLSTVMDEIHTVLK NMNLQFENQMNKTIRNLSTVMDEIHTVLKK RNLSTVMDEIHTVLKKDNVKNEDKDQKSKE R N L L K K 0 0 1 1 0 0 1 0 1 1 2 1 1 0 0 1 2 0 0 2 0 0 14 0 1598.8338 Q8IX12 Q8IX12 1117 1130 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 0.00014046 80.763 By MS/MS By matching By matching 1 2 2 0.91999 0.80956 27.373 5 Median NaN NaN NaN 0 0 Median 0.83984 0.73794 NaN 1 0 Median 0.72437 0.76647 30.585 2 0 Median 1.162 1.0147 31.944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5607100 3385700 2221400 0 0 0 2171500 1308800 862780 3150200 1932300 1217900 285440 144650 140790 0 0 0 0 0 0 25990 3331 27370 138253;138254;138255;138256;138257 139037 139037 1 NLSTVMDEIHTVLKK NMNLQFENQMNKTIRNLSTVMDEIHTVLKK NLSTVMDEIHTVLKKDNVKNEDKDQKSKEN R N L K K D 0 0 1 1 0 0 1 0 1 1 2 2 1 0 0 1 2 0 0 2 0 0 15 1 1726.9288 Q8IX12 Q8IX12 1117 1131 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 8.0167E-05 53.995 By matching By MS/MS By matching By matching 1 2 1 1 1.1988 1.1234 12.418 5 Median NaN NaN NaN 0 0 Median 1.1988 1.122 NaN 1 0 Median 0.94597 1.0903 7.8429 2 0 Median 1.5085 1.437 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3175 1.1234 NaN 1 0 Median 21249000 11112000 10137000 0 0 0 1851600 820960 1030600 17986000 9540600 8445200 184900 75159 109740 0 0 0 1227000 675460 551560 25991 3331 27371 138258;138259;138260;138261;138262 139038;139039 139039 2 NLSVEDAAR AVYCKFHYKTDQGIKNLSVEDAARLSQEDP TDQGIKNLSVEDAARLSQEDPDYGIRDLFN K N L A R L 2 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 973.48287 P04040 P04040 244 252 CAT Catalase yes yes 2 0.0049036 74.301 By MS/MS 1 1.0817 0.93615 NaN 1 Median NaN NaN NaN 0 0 Median 1.0817 0.93615 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6403400 3511800 2891600 0 0 0 6403400 3511800 2891600 0 0 0 0 0 0 0 0 0 0 0 0 25992 1841 27372 138263 139040 139040 1 NLSYQVHR DSDSKLVENCVCLLRNLSYQVHREIPQAER NCVCLLRNLSYQVHREIPQAERYQEAAPNV R N L H R E 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 1015.5199 C9JZR2;O60716 C9JZR2 585 592 CTNND1 Catenin delta-1 yes no 2 0.0065188 70.912 By MS/MS By matching 1 1 1.014 0.87859 13.508 2 Median NaN NaN NaN 0 0 Median 1.1147 0.96665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92236 0.79855 NaN 1 0 Median 3168100 1466800 1701300 0 0 0 2626600 1196200 1430400 0 0 0 0 0 0 0 0 0 541450 270510 270940 25993 732 27373 138264;138265 139041 139041 1 NLTALGLNLVASGGTAK LFSVSDKTGLVEFARNLTALGLNLVASGGT TALGLNLVASGGTAKALRDAGLAVRDVSEL R N L A K A 3 0 2 0 0 0 0 3 0 0 4 1 0 0 0 1 2 0 0 1 0 0 17 0 1598.8992 P31939;F8WEF0 P31939 23 39 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2;3 2.6204E-10 100.55 By MS/MS By matching By MS/MS By matching 2 4 1 1 1.0902 0.95598 11.717 8 Median 0.97038 0.91584 11.331 2 0 Median 1.1193 0.95598 9.1953 4 0 Median 1.1907 1.1555 NaN 1 0 Median 0.97105 0.84129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120170000 56053000 64120000 85867000 40203000 45664000 19222000 8961200 10261000 14915000 6812800 8101700 169980 76518 93466 0 0 0 0 0 0 25994 2207 27374 138266;138267;138268;138269;138270;138271;138272;138273 139042;139043;139044;139045;139046;139047 139046 6 NLTDVSPDLDIR EKVQINVVKLIAALKNLTDVSPDLDIRLKM ALKNLTDVSPDLDIRLKMEESQKELESYMM K N L I R L 0 1 1 3 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1356.6885 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 836 847 SYNE2 Nesprin-2 yes no 2 1.0747E-07 125.75 By MS/MS By MS/MS 2 1 0.58641 0.61505 10.14 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54505 0.57546 13.271 2 2 Median NaN NaN NaN 0 0 Median 0.58641 0.61505 NaN 1 1 Median NaN NaN NaN 0 0 Median 24488000 15289000 9199500 0 0 0 0 0 0 20355000 12677000 7677300 0 0 0 4133700 2611500 1522100 0 0 0 25995 3521 27375 138274;138275;138276 139048;139049;139050 139049 3 NLTEDNSQNQDLIAK DSNPFLTQWVIYAIRNLTEDNSQNQDLIAK NLTEDNSQNQDLIAKMEEQGLADASLLKKV R N L A K M 1 0 3 2 0 2 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 15 0 1701.817 Q9UBB4;B1AHE3 Q9UBB4 424 438 ATXN10 Ataxin-10 yes no 2 3.3122E-14 178.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.3256 1.1433 46.813 5 Median 0.87303 0.80697 NaN 1 0 Median 1.3256 1.1276 NaN 1 0 Median 1.3865 1.3486 NaN 1 0 Median 1.2727 1.1433 NaN 1 0 Median 2.9862 2.8427 NaN 1 0 Median NaN NaN NaN 0 0 Median 45310000 19896000 25414000 17527000 8988800 8538600 5501400 2522400 2979000 8395900 3336400 5059400 8640600 3632100 5008500 5244700 1416300 3828400 0 0 0 25996 4232 27376 138277;138278;138279;138280;138281 139051;139052;139053;139054;139055;139056;139057 139056 7 NLTEQNSYSNIPHEGK SLSEPAPLTLDTSGKNLTEQNSYSNIPHEG LTEQNSYSNIPHEGKHTPLYERSSPINPAQ K N L G K H 0 0 3 0 0 1 2 1 1 1 1 1 0 0 1 2 1 0 1 0 0 0 16 0 1829.8544 Q9NZB2;A0A0C4DH52;Q5T035 Q9NZB2 411 426 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 yes no 3 3.5534E-05 52.823 By MS/MS By MS/MS By MS/MS 1 1 1 0.93922 0.80704 12.61 3 Median 0.6999 0.68239 NaN 1 0 Median 1.0308 0.87355 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93922 0.80704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17510000 8461300 9048500 5230800 2859900 2370900 8719100 4071200 4647900 0 0 0 3559800 1530100 2029700 0 0 0 0 0 0 25997 4186 27377 138282;138283;138284 139058;139059;139060;139061 139061 4 NLTHMQDEVNVK LLCDHGASVNAKDVRNLTHMQDEVNVKSHQ DVRNLTHMQDEVNVKSHQREHQNIQDLEIE R N L V K S 0 0 2 1 0 1 1 0 1 0 1 1 1 0 0 0 1 0 0 2 0 0 12 0 1426.6875 F5H2B9;H0YNH8;Q9BZF9;H0YN48 F5H2B9 167 178 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.0001688 66.262 By MS/MS 1 1.2363 1.1219 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2363 1.1219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1606100 684700 921360 0 0 0 0 0 0 0 0 0 1606100 684700 921360 0 0 0 0 0 0 25998 1026 27378 138285 139062 139062 1 NLTIKTESTLK GAMAKPDCIITCDGKNLTIKTESTLKTTQF CDGKNLTIKTESTLKTTQFSCTLGEKFEET K N L L K T 0 0 1 0 0 0 1 0 0 1 2 2 0 0 0 1 3 0 0 0 0 0 11 1 1246.7133 Q01469;I6L8B7;A8MUU1 Q01469 51 61 FABP5;FABP5P3 Fatty acid-binding protein, epidermal;Putative fatty acid-binding protein 5-like protein 3 yes no 2;3 0.00073033 55.567 By MS/MS 2 1.1479 0.99515 16.973 2 Median NaN NaN NaN 0 0 Median 1.1479 0.99515 16.973 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5793400 2338400 3455000 0 0 0 5793400 2338400 3455000 0 0 0 0 0 0 0 0 0 0 0 0 25999 2685 27379 138286;138287 139063;139064;139065 139065 3 NLTLDQMIR CLPLDKYLQWEIGNKNLTLDQMIRILLCLK WEIGNKNLTLDQMIRILLCLKNNGNWQEAL K N L I R I 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 9 0 1102.5805 Q7L0Y3 Q7L0Y3 350 358 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.00066073 106.36 By MS/MS By MS/MS By matching 1 1 1 1.3136 1.1517 2.9106 3 Median 1.2126 1.2083 NaN 1 0 Median 1.3136 1.1464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3843 1.1517 NaN 1 0 Median 20171000 8754700 11416000 10851000 4791600 6059600 9224000 3919500 5304400 0 0 0 0 0 0 0 0 0 95318 43489 51829 26000 3218 27380 138288;138289;138290 139066;139067 139066 2 NLTNPNTVIILIGNK RSTYNHLSSWLTDARNLTNPNTVIILIGNK NLTNPNTVIILIGNKADLEAQRDVTYEEAK R N L N K A 0 0 4 0 0 0 0 1 0 3 2 1 0 0 1 0 2 0 0 1 0 0 15 0 1622.9356 P61106;X6RFL8 P61106 111 125 RAB14 Ras-related protein Rab-14 yes no 2 2.0897E-06 93.258 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1 1.0039 0.9152 18.433 10 Median 0.85989 0.84002 7.1614 3 0 Median 1.0912 0.91472 16.82 3 0 Median 1.0118 0.975 NaN 1 0 Median 0.99607 0.82205 NaN 1 0 Median 1.4149 1.4409 NaN 1 0 Median 1.1232 0.9452 NaN 1 0 Median 65415000 33547000 31868000 50575000 26308000 24268000 8575600 4288200 4287400 1776200 871110 905090 890620 430240 460380 2106500 965860 1140600 1490500 683180 807280 26001 2545 27381 138291;138292;138293;138294;138295;138296;138297;138298;138299;138300 139068;139069;139070;139071;139072 139069 4 NLTQDEMQR STLHRLYHLSREMRKNLTQDEMQRMSTRVL SREMRKNLTQDEMQRMSTRVLLATLSIPIT K N L Q R M 0 1 1 1 0 2 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1133.5135 Q14152 Q14152 309 317 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00081745 96.253 By MS/MS By MS/MS 1 2 1.3682 1.1509 11.487 3 Plateau 1.0233 0.97896 NaN 1 0 Median 1.3589 1.1509 9.4551 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18349000 7955400 10393000 4871200 2244500 2626800 13477000 5710900 7766400 0 0 0 0 0 0 0 0 0 0 0 0 26002 2860 27382 138301;138302;138303 139073;139074;139075;139076;139077;139078 139073 6 NLTQEQLIR SPSISTPPIVPDIQKNLTQEQLIRQQLLAK VPDIQKNLTQEQLIRQQLLAKQKQLLELQQ K N L I R Q 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1113.6142 O94913;E9PKN0;E9PQ01 O94913 197 205 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 2 0.0097875 73.26 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26003 1736 27383 138304 139079 139079 1 NLTQYSWLLDGFPR IPDDVMTRLALHELKNLTQYSWLLDGFPRT KNLTQYSWLLDGFPRTLPQAEALDRAYQID K N L P R T 0 1 1 1 0 1 0 1 0 0 3 0 0 1 1 1 1 1 1 0 0 0 14 0 1708.8573 Q9UIJ7 Q9UIJ7 81 94 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 4.5013E-08 104.52 By MS/MS By MS/MS 1 1 0.97529 0.87345 20.383 2 Median 0.79957 0.75621 NaN 1 0 Median 1.1896 1.0089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9329200 4909400 4419800 6915600 3846200 3069400 2413600 1063200 1350400 0 0 0 0 0 0 0 0 0 0 0 0 26004 4291 27384 138305;138306 139080;139081;139082;139083 139080 4 NLTSNMWR MVDKYLKEILQDLVKNLTSNMWRVRESSCL ILQDLVKNLTSNMWRVRESSCLALNDLLRG K N L W R V 0 1 2 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 8 0 1020.4811 Q5VYK3;J3KN16 Q5VYK3 1170 1177 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0075282 66.682 By MS/MS By MS/MS 1 1 1.1989 1.0805 16.435 2 Median 1.0052 0.96197 NaN 1 0 Median 1.4299 1.2137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7993200 3668000 4325100 4836200 2368700 2467500 3157000 1299400 1857600 0 0 0 0 0 0 0 0 0 0 0 0 26005 3116 27385 138307;138308 139084;139085;139086 139084 3 NLTVILSDASAPGEGEHK RYYIADRLNNDPGWKNLTVILSDASAPGEG VILSDASAPGEGEHKIMDYIRRQRAQPNHD K N L H K I 2 0 1 1 0 0 2 2 1 1 2 1 0 0 1 2 1 0 0 1 0 0 18 0 1836.9218 Q9H0D6 Q9H0D6 190 207 XRN2 5-3 exoribonuclease 2 yes yes 2;3 1.6465E-15 166.38 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 3 2 1.0785 0.95146 32.851 12 Median 0.45239 0.4374 NaN 1 0 Median 1.2733 1.1135 NaN 1 0 Median 0.78847 0.85619 4.9113 2 0 Median 1.1276 0.96613 26.063 3 0 Plateau 1.0893 1.0394 24.587 3 0 Median 1.4941 1.265 7.4437 2 0 Median 71264000 39653000 31612000 5807800 4298300 1509500 4701000 2218100 2482900 36403000 20572000 15831000 3788200 1785900 2002300 18903000 10200000 8702100 1661600 577760 1083900 26006 3924 27386 138309;138310;138311;138312;138313;138314;138315;138316;138317;138318;138319;138320 139087;139088;139089;139090;139091;139092;139093 139089 7 NLTWTLSNLCR LAVPDMSSLACGYLRNLTWTLSNLCRNKNP GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL R N L C R N 0 1 2 0 1 0 0 0 0 0 3 0 0 0 0 1 2 1 0 0 0 0 11 0 1376.6871 P52292 P52292 228 238 KPNA2 Importin subunit alpha-1 yes yes 2 7.1618E-08 131.44 By MS/MS 1 1.2585 1.0598 NaN 1 Median NaN NaN NaN 0 0 Median 1.2585 1.0598 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8348700 3655700 4693000 0 0 0 8348700 3655700 4693000 0 0 0 0 0 0 0 0 0 0 0 0 26007 2448 27387 138321 139094 139094 1 NLTYSAPLYVDITK DGAPSPMMPNEARLRNLTYSAPLYVDITKT RNLTYSAPLYVDITKTVIKEGEEQLQTQHQ R N L T K T 1 0 1 1 0 0 0 0 0 1 2 1 0 0 1 1 2 0 2 1 0 0 14 0 1596.8399 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 110 123 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.00062612 65.395 By MS/MS By MS/MS By matching 1 4 2 0.85515 0.84574 67.011 7 Median 0.99763 0.9738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75704 0.78428 87.558 4 0 Median 1.0749 0.89106 29.038 2 0 Median 15803000 9260900 6542200 4827500 2358900 2468600 0 0 0 0 0 0 0 0 0 10723000 6783600 3939900 252080 118380 133700 26008 671 27388 138322;138323;138324;138325;138326;138327;138328 139095;139096;139097;139098 139097 4 NLVAFVSQEAGNR VLLGQDEPLIHVFAKNLVAFVSQEAGNRAV AKNLVAFVSQEAGNRAVLLAVAVKDKSMEG K N L N R A 2 1 2 0 0 1 1 1 0 0 1 0 0 1 0 1 0 0 0 2 0 0 13 0 1403.7157 Q9BT73 Q9BT73 81 93 PSMG3 Proteasome assembly chaperone 3 yes yes 2 0.00045482 76.143 By MS/MS By MS/MS By MS/MS 1 1 1 1.1768 0.99732 14.842 3 Median 0.91457 0.88911 NaN 1 0 Median 1.1768 0.99732 NaN 1 0 Median 1.1789 1.1936 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17079000 8215900 8862800 10491000 5348600 5142700 3482100 1533900 1948200 3105200 1333400 1771800 0 0 0 0 0 0 0 0 0 26009 3822 27389 138329;138330;138331 139099;139100;139101;139102 139100 4 NLVDFTFVENVVHGHILAAEQLSR AARNGKMKFVIGNGKNLVDFTFVENVVHGH NVVHGHILAAEQLSRDSTLGGKAFHITNDE K N L S R D 2 1 2 1 0 1 2 1 2 1 3 0 0 2 0 1 1 0 0 4 0 0 24 0 2707.4082 Q15738 Q15738 233 256 NSDHL Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating yes yes 3 3.1359E-24 106.43 By MS/MS 1 1.3086 1.1389 NaN 1 Median NaN NaN NaN 0 0 Median 1.3086 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5672900 2401500 3271400 0 0 0 5672900 2401500 3271400 0 0 0 0 0 0 0 0 0 0 0 0 26010 2966 27390 138332 139103;139104 139103 2 NLVDNITGQR TETLEKVSITEAMHRNLVDNITGQRLLEAQ EAMHRNLVDNITGQRLLEAQACTGGIIDPS R N L Q R L 0 1 2 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1128.5887 Q15149;H0YDN1 Q15149 4438 4447 PLEC Plectin yes no 2 8.0871E-18 157.68 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1.4431 1.4995 16.347 7 Median 1.8263 1.7717 NaN 1 1 Median 1.3005 1.0967 NaN 1 0 Median 1.426 1.4995 NaN 1 0 Median 1.5198 1.3233 NaN 1 0 Median 1.4431 1.4995 13.142 3 2 Median NaN NaN NaN 0 0 Median 67285000 26471000 40813000 30549000 11180000 19369000 2228200 987490 1240700 17181000 7026700 10155000 2178500 842420 1336100 15147000 6434800 8712300 0 0 0 26011 2933 27391 138333;138334;138335;138336;138337;138338;138339 139105;139106;139107;139108;139109;139110;139111;139112;139113 139105 9 NLVDNVAK KDHYKLALGQINIAKNLVDNVAKDYVRLMK GQINIAKNLVDNVAKDYVRLMKYGDSLYRC K N L A K D 1 0 2 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 871.47633 Q9BZE4;Q5T3R7 Q9BZE4 104 111 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.019658 46.994 By matching By MS/MS By MS/MS 1 1 1 1.3108 1.3289 7.138 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1284 1.1675 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3108 1.3427 NaN 1 0 Median 1.482 1.2208 NaN 1 0 Median 11916000 5128200 6788100 0 0 0 0 0 0 751620 294520 457100 0 0 0 8463800 3627400 4836300 2700900 1206200 1494700 26012 3898 27392 138340;138341;138342 139114;139115;139116;139117 139115 4 NLVDSSVYFR QGAIYTVEYACSAVKNLVDSSVYFRSVEGL CSAVKNLVDSSVYFRSVEGLLKQAISIRDH K N L F R S 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 2 0 0 1 2 0 0 10 0 1198.5982 K7ENY0;Q96FH0 K7ENY0 26 35 MEF2BNB Protein MEF2BNB yes no 2 0.0011713 67.897 By MS/MS By matching 1 1 1.3654 1.2397 18.544 2 Median 1.1168 1.0873 NaN 1 0 Median 1.6694 1.4133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8551400 3551500 4999900 6593400 2884000 3709400 1958000 667520 1290500 0 0 0 0 0 0 0 0 0 0 0 0 26013 1390 27393 138343;138344 139118 139118 1 NLVDSYVAIINK FSMDPQLERQVETIRNLVDSYVAIINKSIR TIRNLVDSYVAIINKSIRDLMPKTIMHLMI R N L N K S 1 0 2 1 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 2 0 0 12 0 1347.7398 P50570 P50570 658 669 DNM2 Dynamin-2 yes yes 2 0.00087622 59.8 By MS/MS By matching By MS/MS 1 1 1 1.0989 1.1745 34.829 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0742 1.1745 NaN 1 0 Median 1.0989 0.93836 NaN 1 0 Median 1.8069 1.8584 NaN 1 0 Median NaN NaN NaN 0 0 Median 11095000 5002700 6092500 0 0 0 0 0 0 9151400 4304700 4846700 350650 165410 185240 1593200 532610 1060600 0 0 0 26014 2417 27394 138345;138346;138347 139119;139120;139121 139121 3 NLVEELPQPR LHLFPDEYIPEDILKNLVEELPQPRKIPKR EDILKNLVEELPQPRKIPKRLDEYTQEEID K N L P R K 0 1 1 0 0 1 2 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 10 0 1193.6404 Q9BYD1;E5RJI7;H0YAX3 Q9BYD1 140 149 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2 0.0018447 79.906 By MS/MS By MS/MS By MS/MS 1 1 1 0.88889 0.85236 18.513 3 Median 0.77224 0.75614 NaN 1 1 Median 1.3103 1.0874 NaN 1 1 Median 0.88889 0.85236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15590000 8223200 7366400 7362700 4120100 3242600 2663300 1266000 1397300 5563600 2837000 2726600 0 0 0 0 0 0 0 0 0 26015 3888 27395 138348;138349;138350 139122;139123;139124 139122 3 NLVELAELELK ELIDFKTRRVAAFRKNLVELAELELKHAKG AFRKNLVELAELELKHAKGNLQLLQNCLAV K N L L K H 1 0 1 0 0 0 3 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1269.718 A0A0A0MRI2;Q9UNH7 A0A0A0MRI2 388 398 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 2 0.00015601 99.815 By matching By MS/MS By matching By matching 1 1 1 2 1.1723 0.99896 28.181 5 Median 0.94507 0.93166 NaN 1 0 Median 1.1723 0.99423 NaN 1 0 Median 1.0276 0.99896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7999 1.5258 27.09 2 0 Median 18955000 8806700 10149000 673660 282230 391430 9077900 4080200 4997600 8662400 4243600 4418800 0 0 0 0 0 0 541280 200590 340690 26016 161 27396 138351;138352;138353;138354;138355 139125;139126 139125 2 NLVEQHIQDIVVHYTFNK YLDTFGRPVIVAYKKNLVEQHIQDIVVHYT EQHIQDIVVHYTFNKVLMLQEPLLVVAAFY K N L N K V 0 0 2 1 0 2 1 0 2 2 1 1 0 1 0 0 1 0 1 3 0 0 18 0 2196.1328 P04843;B7Z4L4 P04843 415 432 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 1.3949E-06 65.716 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.2916 1.1161 7.9656 6 Median 1.0705 1.0023 NaN 1 0 Median 1.3166 1.1471 7.479 2 0 Median 1.1049 1.1255 NaN 1 0 Median 1.4625 1.2542 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2971 1.1068 NaN 1 0 Median 32660000 15196000 17463000 15689000 7415900 8272900 6195700 2585600 3610100 10066000 4942600 5123600 358150 115110 243040 0 0 0 350660 136800 213860 26017 1853 27397 138356;138357;138358;138359;138360;138361 139127;139128;139129;139130;139131;139132;139133 139130 7 NLVFEDNDNKLEVAELNGVPR VQNEDVQRAVCGALRNLVFEDNDNKLEVAE NDNKLEVAELNGVPRLLQVLKQTRDLETKK R N L P R L 1 1 4 2 0 0 3 1 0 0 3 1 0 1 1 0 0 0 0 3 0 0 21 1 2384.1972 Q99959 Q99959 421 441 PKP2 Plakophilin-2 yes yes 3 0.0046162 36.111 By MS/MS 1 0.55718 0.61704 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55718 0.61704 NaN 1 0 Median NaN NaN NaN 0 0 Median 2231200 1239500 991650 0 0 0 0 0 0 0 0 0 0 0 0 2231200 1239500 991650 0 0 0 26018 3773 27398 138362 139134 139134 0 NLVLLVR DEKNDRTSLNRKLDRNLVLLVREKFGDQDV SLNRKLDRNLVLLVREKFGDQDVWILPQAE R N L V R E 0 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 2 0 0 7 0 825.54362 Q9H2W6 Q9H2W6 156 162 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 0.017845 64.547 By MS/MS By MS/MS 1 1 1.241 1.1822 7.4429 2 Median 1.187 1.1216 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2975 1.2461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13217000 5834600 7382300 6115900 2632800 3483100 0 0 0 7100900 3201800 3899100 0 0 0 0 0 0 0 0 0 26019 3948 27399 138363;138364 139135;139136;139137 139137 3 NLVMNTGPYYFVK SFLIPECGILSEELKNLVMNTGPYYFVKNL LKNLVMNTGPYYFVKNLPLHELITPEFIST K N L V K N 0 0 2 0 0 0 0 1 0 0 1 1 1 1 1 0 1 0 2 2 0 0 13 0 1544.7697 O75818;A0A087X1N3;F8WC38 O75818 58 70 RPP40 Ribonuclease P protein subunit p40 yes no 2 0.0013302 55.567 By MS/MS By MS/MS By matching 1 1 1 0.99377 0.97998 3.3381 3 Median 1.0984 1.026 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91479 0.96151 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99377 0.97998 NaN 1 0 Median NaN NaN NaN 0 0 Median 10921000 5358300 5562600 3939600 1896900 2042800 0 0 0 6052900 2883000 3169800 0 0 0 928430 578370 350050 0 0 0 26020 1696 27400 138365;138366;138367 139138;139139;139140;139141 139141 4 NLVPGESVYGEK GVFICRGKEDALVTKNLVPGESVYGEKRVS VTKNLVPGESVYGEKRVSISEGDDKIEYRA K N L E K R 0 0 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 12 0 1290.6456 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 110 121 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.00020783 85.377 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 3 3 1.0211 0.8883 12.204 11 Median 0.869 0.80728 NaN 1 0 Median 1.176 0.99771 14.622 2 0 Median 0.92802 0.89675 NaN 1 0 Median 1.1278 0.96439 NaN 1 0 Median 0.76105 0.7265 8.9287 3 0 Median 1.0757 0.8883 5.969 3 0 Median 352470000 178110000 174360000 10517000 5332000 5185400 14488000 6969000 7519400 123090000 59902000 63189000 22079000 10171000 11908000 148700000 79905000 68793000 33595000 15828000 17767000 26021 2097 27401 138368;138369;138370;138371;138372;138373;138374;138375;138376;138377;138378 139142;139143;139144;139145;139146;139147;139148;139149;139150;139151;139152;139153;139154;139155;139156;139157;139158;139159;139160 139156 19 NLVPGESVYGEKR GVFICRGKEDALVTKNLVPGESVYGEKRVS TKNLVPGESVYGEKRVSISEGDDKIEYRAW K N L K R V 0 1 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 13 1 1446.7467 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 110 122 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 2.0604E-07 130.94 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 7 3 1.0197 0.96517 29.237 15 Median 0.6544 0.70105 NaN 1 0 Median 1.321 1.1876 NaN 1 0 Median 1.1123 1.2043 12.257 2 0 Median 1.2625 1.0928 13.748 2 0 Median 0.79893 0.84484 30.862 6 0 Median 1.0386 0.90461 33.219 3 0 Median 424400000 210680000 213720000 4512100 2347600 2164500 4554300 1697100 2857200 45442000 19984000 25458000 25605000 11648000 13957000 284940000 147870000 137070000 59347000 27138000 32209000 26022 2097 27402 138379;138380;138381;138382;138383;138384;138385;138386;138387;138388;138389;138390;138391;138392;138393;138394;138395;138396 139161;139162;139163;139164;139165;139166;139167;139168;139169;139170;139171;139172;139173;139174;139175;139176;139177;139178;139179;139180 139168 20 NLVSYLK SAASDTATSTQRPLRNLVSYLKQKQAAGVI TSTQRPLRNLVSYLKQKQAAGVISLPVGGN R N L L K Q 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 7 0 835.48035 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37;Q8NDT2 A0A494C001 846 852 RBM15;RBM15B Putative RNA-binding protein 15;Putative RNA-binding protein 15B no no 2 0.031276 49.358 By MS/MS By matching By matching 2 1 1 1.0938 1.0344 13.503 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0146 1.0344 7.6465 2 0 Median 1.0509 0.86044 NaN 1 0 Median 1.1386 1.1729 NaN 1 0 Median NaN NaN NaN 0 0 Median 13124000 6757000 6367300 0 0 0 0 0 0 10868000 5727500 5140400 310140 151920 158220 1946200 877600 1068600 0 0 0 26023 60;3424 27403 138397;138398;138399;138400 139181;139182 139182 2 NLVTEDVMR TLNTNHGHILVDYSKNLVTEDVMRMLVDLA LVDYSKNLVTEDVMRMLVDLAKSRGVEAAR K N L M R M 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 2 0 0 9 0 1075.5332 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ENA0;K7ELR7;A0A2R8YF08;A0A0J9YXM3;K7ERK8;K7EIL4;A0A0J9YXH9;A0A0J9YYI8 P06744 58 66 GPI Glucose-6-phosphate isomerase yes no 2 0.00050769 119.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 2 2 1.1231 0.99333 46.543 14 Median 1.1862 1.117 16.614 4 0 Median 1.0527 0.89429 5.0007 4 3 Median 0.8652 1.0894 18.431 2 0 Median 1.1475 0.98438 10.134 2 0 Median 2.1841 2.2278 122.88 2 0 Median NaN NaN NaN 0 0 Median 484570000 219760000 264800000 274490000 123710000 150780000 176430000 81580000 94846000 20420000 9227800 11192000 6724600 2900900 3823700 6505000 2341400 4163600 0 0 0 26024 1875 27404;27405 138401;138402;138403;138404;138405;138406;138407;138408;138409;138410;138411;138412;138413;138414;138415 139183;139184;139185;139186;139187;139188;139189;139190;139191;139192;139193;139194;139195;139196;139197;139198;139199 139189 642 17 NLVVAGTSQLYVYR LEFSMYCNFFNNSERNLVVAGTSQLYVYRL RNLVVAGTSQLYVYRLNRDAEALTKNDRST R N L Y R L 1 1 1 0 0 1 0 1 0 0 2 0 0 0 0 1 1 0 2 3 0 0 14 0 1581.8515 Q10570;E9PIM1 Q10570 29 42 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.0071975 51.927 By MS/MS 1 0.87125 0.95076 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87125 0.95076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1939900 1012400 927530 0 0 0 0 0 0 1939900 1012400 927530 0 0 0 0 0 0 0 0 0 26025 2753 27406 138416 139200 139200 1 NLWVSGLSSTTR IIKDEKGRVGSGSGRNLWVSGLSSTTRATD SGRNLWVSGLSSTTRATDLKNLFSKYGKVV R N L T R A 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 3 2 1 0 1 0 0 12 0 1319.6834 Q14151 Q14151 408 419 SAFB2 Scaffold attachment factor B2 yes yes 2 1.5803E-10 136.33 By MS/MS By MS/MS By MS/MS 1 2 3 0.72464 0.72302 35.137 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42266 0.4647 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.93018 0.94505 27.63 3 0 Plateau NaN NaN NaN 0 0 Median 55816000 29819000 25997000 0 0 0 0 0 0 14122000 9565800 4556100 0 0 0 41694000 20253000 21441000 0 0 0 26026 2859 27407 138417;138418;138419;138420;138421;138422 139201;139202;139203;139204;139205;139206 139201 6 NLYHSEAFSINFR NESAKLVDTFLEDVKNLYHSEAFSINFRDA VKNLYHSEAFSINFRDAEEAKKKINDYVEK K N L F R D 1 1 2 0 0 0 1 0 1 1 1 0 0 2 0 2 0 0 1 0 0 0 13 0 1596.7685 CON__P34955 CON__P34955 158 170 yes yes 2;3 3.7912E-40 180.07 By MS/MS By MS/MS 4 2 0.14199 0.13842 83.189 6 Median 0.087572 0.082925 59.482 4 4 Median NaN NaN NaN 0 0 Median 0.28052 0.28766 67.664 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65933000 60760000 5172500 52280000 49493000 2786700 0 0 0 13653000 11268000 2385800 0 0 0 0 0 0 0 0 0 + 26027 763 27408 138423;138424;138425;138426;138427;138428 139207;139208;139209;139210;139211;139212 139208 6 NLYIISVK PVGAVINCADNTGAKNLYIISVKGIKGRLN ADNTGAKNLYIISVKGIKGRLNRLPAAGVG K N L V K G 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 1 0 0 8 0 948.56442 P62829;C9JD32;J3KT29;B9ZVP7 P62829 36 43 RPL23 60S ribosomal protein L23 yes no 1;2 0.0076735 66.073 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 2 1 1.1947 1.0893 13.22 11 Median 1.1872 1.1139 1.3151 2 0 Median 1.1962 1.003 16.539 4 0 Median 1.176 1.1153 3.3421 2 0 Median 1.1238 0.92082 15.879 2 0 Median NaN NaN NaN 0 0 Median 1.4653 1.2049 NaN 1 0 Median 330110000 149770000 180340000 168570000 77181000 91386000 54864000 25076000 29788000 97872000 43902000 53970000 1944600 900950 1043600 0 0 0 6864600 2715700 4148900 26028 2598 27409 138429;138430;138431;138432;138433;138434;138435;138436;138437;138438;138439 139213;139214;139215;139216;139217;139218 139218 5 NLYNNILSDK AFIQHPSLMFEQEVKNLYNNILSDKNSSVN EQEVKNLYNNILSDKNSSVNLKIQVLKNLQ K N L D K N 0 0 3 1 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 A0A590UJS4;Q6KC79 A0A590UJS4 2214 2223 NIPBL Nipped-B-like protein yes no 2 0.056884 60.518 By matching By MS/MS 1 1 0.98792 0.97104 51.296 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73501 0.67563 NaN 1 0 Median 1.3278 1.3956 NaN 1 0 Median NaN NaN NaN 0 0 Median 4112300 1672600 2439700 0 0 0 0 0 0 0 0 0 395080 229430 165660 3717200 1443200 2274100 0 0 0 26029 488 27410 138440;138441 139219 139219 0 NLYNNILSDKNSSVNLK AFIQHPSLMFEQEVKNLYNNILSDKNSSVN YNNILSDKNSSVNLKIQVLKNLQTYLQEED K N L L K I 0 0 5 1 0 0 0 0 0 1 3 2 0 0 0 3 0 0 1 1 0 0 17 1 1935.0062 A0A590UJS4;Q6KC79 A0A590UJS4 2214 2230 NIPBL Nipped-B-like protein yes no 3 0.0011342 33.308 By MS/MS 1 0.96203 1.0905 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96203 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11573000 5660400 5912400 0 0 0 0 0 0 11573000 5660400 5912400 0 0 0 0 0 0 0 0 0 26030 488 27411 138442 139220;139221 139220 2 NLYPSSSPYTR QGDVPTPKQFVADVKNLYPSSSPYTRNWDK ADVKNLYPSSSPYTRNWDKLVGEIKEEEKN K N L T R N 0 1 1 0 0 0 0 0 0 0 1 0 0 0 2 3 1 0 2 0 0 0 11 0 1283.6146 Q9Y2Z0 Q9Y2Z0 275 285 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 0.00018909 108.98 By MS/MS By matching By matching 1 1 1 0.69332 0.61433 42.571 3 Median 0.88799 0.88555 NaN 1 0 Median 0.41936 0.37899 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69332 0.61433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19041000 10540000 8501000 12869000 6572200 6296800 4695300 3098100 1597200 0 0 0 1476800 869770 607060 0 0 0 0 0 0 26031 4398 27412 138443;138444;138445 139222;139223 139222 2 NLYSDDIPHALR LSDTNMVDFAMDVYKNLYSDDIPHALREKR VYKNLYSDDIPHALREKRTTVVAQLKQLQA K N L L R E 1 1 1 2 0 0 0 0 1 1 2 0 0 0 1 1 0 0 1 0 0 0 12 0 1412.7048 P60228;H0YBR5;E5RIT4 P60228 60 71 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2;3 0.00089343 88.496 By MS/MS By matching By MS/MS 1 1 2 0.91978 0.84111 7.1904 4 Median 0.90979 0.88142 NaN 1 0 Median 0.92989 0.80264 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95097 0.82306 10.323 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21753000 10974000 10780000 7229100 4228500 3000600 2982600 1418900 1563700 0 0 0 11542000 5326300 6215400 0 0 0 0 0 0 26032 2524 27413 138446;138447;138448;138449 139224;139225 139225 2 NLYVTFPIPDLQK HLKQLYKIVPIKDIRNLYVTFPIPDLQKYY IRNLYVTFPIPDLQKYYKSNPGHYLGHLIG R N L Q K Y 0 0 1 1 0 1 0 0 0 1 2 1 0 1 2 0 1 0 1 1 0 0 13 0 1546.8395 P14735;A0A3B3ISG5 P14735 312 324 IDE Insulin-degrading enzyme yes no 2 0.011894 35.224 By MS/MS By matching 1 1 0.75146 0.6973 12.863 2 Median 0.76452 0.76369 NaN 1 0 Median 0.73862 0.63667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3268600 1592700 1675900 1953500 987260 966230 1315100 605430 709700 0 0 0 0 0 0 0 0 0 0 0 0 26033 423 27414 138450;138451 139226;139227;139228 139228 3 NMAALDAADR LKSLISVIHLITAARNMAALDAADRAKKK_ ITAARNMAALDAADRAKKK___________ R N M D R A 4 1 1 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1046.4815 O14735;B3KY94 O14735 200 209 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase yes no 2 0.00041294 76.1 By MS/MS By MS/MS By matching 1 2 1 1.239 1.1782 10.132 4 Median 1.177 1.1909 NaN 1 0 Median 1.2952 1.0621 13.16 2 0 Median 1.2792 1.1948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16650000 7680900 8968700 2099300 940890 1158400 13929000 6394500 7534200 621690 345510 276180 0 0 0 0 0 0 0 0 0 26034 588 27415 138452;138453;138454;138455 139229;139230 139229 2 NMADAMR KFYWGHKEILIPVFKNMADAMRKHPEVDVL EILIPVFKNMADAMRKHPEVDVLINFASLR K N M M R K 2 1 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 7 0 807.33674 P53396 P53396 555 561 ACLY ATP-citrate synthase yes yes 2 0.033342 48.346 By MS/MS 2 1.2187 1.05 4.926 2 Median NaN NaN NaN 0 0 Median 1.2187 1.05 4.926 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7237800 3261000 3976800 0 0 0 7237800 3261000 3976800 0 0 0 0 0 0 0 0 0 0 0 0 26035 2467 27416 138456;138457 139231 139231 1 NMAEQIIQEIYSQIQSK GVEDKESWHGKPLPKNMAEQIIQEIYSQIQ AEQIIQEIYSQIQSKKKILATPPQEDAPSV K N M S K K 1 0 1 0 0 4 2 0 0 4 0 1 1 0 0 2 0 0 1 0 0 0 17 0 2022.0092 P29401;A0A0B4J1R6;E9PFF2 P29401 265 281 TKT Transketolase yes no 3 0.0063446 24.793 By MS/MS 1 1.0709 1.0367 NaN 1 Median 1.0709 1.0367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1374000 675400 698570 1374000 675400 698570 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26036 2173 27417 138458 139232 139232 1 NMAILDPPDADHLYSAK CNFYVMHREVESLEKNMAILDPPDADHLYS AILDPPDADHLYSAKVMLMASPSMEDLYHK K N M A K V 3 0 1 3 0 0 0 0 1 1 2 1 1 0 2 1 0 0 1 0 0 0 17 0 1869.8931 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 432 448 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2;3 4.1545E-05 49.5 By MS/MS By matching 3 1 0.72838 0.72282 9.3053 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68271 0.73002 11.264 3 0 Median 0.83393 0.71569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25653000 14945000 10707000 0 0 0 0 0 0 25370000 14765000 10605000 282840 180740 102100 0 0 0 0 0 0 26037 3331 27418 138459;138460;138461;138462 139233;139234;139235;139236;139237;139238 139235 6 NMAIQQELEKEK EYNEEKKKEAEELARNMAIQQELEKEKQRV LARNMAIQQELEKEKQRVAQQKQQQLEQEQ R N M E K Q 1 0 1 0 0 2 3 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 12 1 1459.7341 O95630;C9JK83;C9JEK5;F5H5B9 O95630 135 146 STAMBP STAM-binding protein yes no 3 0.032126 56.654 By matching By MS/MS 1 1 0.98444 0.98262 28.283 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1442 1.2002 NaN 1 0 Median 0.84701 0.80451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11230000 5859600 5370800 0 0 0 0 0 0 5653100 2973900 2679100 5577300 2885700 2691700 0 0 0 0 0 0 26038 1784 27419 138463;138464 139239 139239 0 NMALSIAER VPQISAPQSNKERLKNMALSIAERYRAQGI NKERLKNMALSIAERYRAQGISANKFVDST K N M E R Y 2 1 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 9 0 1003.5121 Q8N1F7;H3BVG0;H3BVE2;H3BRD9 Q8N1F7 665 673 NUP93 Nuclear pore complex protein Nup93 yes no 2 1.3064E-09 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.3391 1.2203 19.052 6 Median 1.3268 1.2826 NaN 1 0 Median 1.5007 1.3005 NaN 1 0 Median 1.4398 1.5232 NaN 1 0 Median 1.1676 1.0061 20.238 2 0 Median NaN NaN NaN 0 0 Median 1.3312 1.0775 NaN 1 0 Median 48205000 15599000 32606000 3767900 1695600 2072300 3239300 1418600 1820700 26242000 6082100 20160000 12326000 5462900 6862800 0 0 0 2629800 939330 1690500 26039 3356 27420;27421 138465;138466;138467;138468;138469;138470;138471 139240;139241;139242;139243;139244;139245;139246;139247;139248;139249;139250 139243 1714 11 NMAPDLR FDRVDENNPEYLRERNMAPDLRQDFNMMEQ NPEYLRERNMAPDLRQDFNMMEQKKRVSMI R N M L R Q 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 7 0 815.39597 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25;D6RJE2;D6RAH3 E7EV99 40 46 ADD1 Alpha-adducin yes no 2 0.019661 78.616 By MS/MS By MS/MS 2 1 0.87496 0.82701 27.204 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96936 1.0178 29.351 2 1 Median 0.87496 0.7505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3768700 2095100 1673600 0 0 0 0 0 0 2943300 1617900 1325400 825330 477170 348160 0 0 0 0 0 0 26040 866 27422 138472;138473;138474 139251;139252 139251 2 NMAQFSVLLPR QIGSTEWSETLHNLKNMAQFSVLLPRH___ HNLKNMAQFSVLLPRH______________ K N M P R H 1 1 1 0 0 1 0 0 0 0 2 0 1 1 1 1 0 0 0 1 0 0 11 0 1274.6805 B4DUC8;Q13126 B4DUC8 289 299 MTAP S-methyl-5-thioadenosine phosphorylase yes no 2 0.00011372 128.38 By MS/MS By matching 2 1 0.97596 0.9135 27.228 3 Median 0.9635 0.91 0.54331 2 0 Median 1.4681 1.4582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17971000 8800100 9171300 16389000 8218800 8170400 1582300 581370 1000900 0 0 0 0 0 0 0 0 0 0 0 0 26041 604 27423;27424 138475;138476;138477 139253;139254;139255;139256 139254 231 4 NMDAIIVDSEK TQKKYQIAVTKVLGKNMDAIIVDSEKTGRD VLGKNMDAIIVDSEKTGRDCIQYIKEQRGE K N M E K T 1 0 1 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 11 0 1233.5911 Q14683;G8JLG1 Q14683 541 551 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00015527 90.827 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1.128 1.0245 50.893 6 Median 1.4885 1.4834 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.1426 3.3347 NaN 1 1 Median 1.128 1.0209 4.4979 2 0 Median 0.86724 0.9083 13.023 2 0 Median NaN NaN NaN 0 0 Median 128890000 42705000 86185000 12545000 4871300 7674200 0 0 0 75132000 16771000 58361000 4815800 2122600 2693200 36396000 18940000 17456000 0 0 0 26042 2889 27425;27426 138478;138479;138480;138481;138482;138483 139257;139258;139259;139260;139261;139262;139263;139264;139265 139258 1581 9 NMDPLNDNIATLLHQSSDK YAGKVDYKADEWLMKNMDPLNDNIATLLHQ LNDNIATLLHQSSDKFVSELWKDVDRIIGL K N M D K F 1 0 3 3 0 1 0 0 1 1 3 1 1 0 1 2 1 0 0 0 0 0 19 0 2125.011 P35579 P35579 588 606 MYH9 Myosin-9 yes yes 2;3 5.3282E-13 102.66 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 1 1 0.90286 0.82899 25.581 10 Median 1.0353 0.99979 45.651 3 0 Plateau 0.91298 0.79438 12.147 4 0 Median 0.89586 0.99762 NaN 1 0 Median 0.99128 0.89807 NaN 1 0 Median 0.83895 0.88876 NaN 1 0 Median NaN NaN NaN 0 0 Median 78952000 39836000 39116000 21190000 10779000 10411000 53569000 26849000 26720000 2247400 1127600 1119800 84079 40289 43790 1861500 1040300 821130 0 0 0 26043 2244 27427 138484;138485;138486;138487;138488;138489;138490;138491;138492;138493 139266;139267;139268;139269;139270;139271;139272;139273 139268 8 NMDPLNDNVAALLHQSTDR YAGKVDYKANEWLMKNMDPLNDNVAALLHQ LNDNVAALLHQSTDRLTAEIWKDVEGIVGL K N M D R L 2 1 3 3 0 1 0 0 1 0 3 0 1 0 1 1 1 0 0 1 0 0 19 0 2123.0066 Q7Z406 Q7Z406 614 632 MYH14 Myosin-14 no no 3 0.00065736 30.094 By MS/MS By MS/MS 1 1 0.8921 0.81063 4.1303 2 Median 0.8596 0.83465 NaN 1 0 Median 0.92583 0.7873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7188200 3865400 3322800 3732300 2042200 1690200 3455900 1823300 1632600 0 0 0 0 0 0 0 0 0 0 0 0 26044 3242 27428 138494;138495 139274;139275;139276 139274 3 NMDPLNDNVATLLHQSSDR YAGKVDYKADEWLMKNMDPLNDNVATLLHQ LNDNVATLLHQSSDRFVAELWKDVDRIVGL K N M D R F 1 1 3 3 0 1 0 0 1 0 3 0 1 0 1 2 1 0 0 1 0 0 19 0 2139.0015 P35580 P35580 595 613 MYH10 Myosin-10 yes yes 2;3 2.9248E-18 128.9 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 0.9251 0.82533 26.117 7 Median 0.92912 0.87452 1.0355 2 0 Median 1.0167 0.86162 6.0848 2 0 Median 0.47683 0.52371 23.225 2 0 Median NaN NaN NaN 0 0 Median 0.62678 0.65544 NaN 1 0 Median NaN NaN NaN 0 0 Median 59440000 31801000 27639000 28156000 13965000 14191000 12557000 5826200 6731100 13820000 9026700 4793400 0 0 0 4907400 2983700 1923700 0 0 0 26045 2245 27429;27430 138496;138497;138498;138499;138500;138501;138502 139277;139278;139279;139280;139281;139282;139283;139284 139280 1006 8 NMEKEHMDAINHDTKELEK EAGIKELQKSMERWKNMEKEHMDAINHDTK EHMDAINHDTKELEKMTNRQGMLLKKKEEC K N M E K M 1 0 2 2 0 0 4 0 2 1 1 3 2 0 0 0 1 0 0 0 0 0 19 2 2311.0573 Q9UQE7 Q9UQE7 906 924 SMC3 Structural maintenance of chromosomes protein 3 yes yes 4;5 0.010243 22.221 By MS/MS 2 0.75786 0.91069 15.831 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75786 0.91069 15.831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13680000 7799300 5880700 0 0 0 0 0 0 13680000 7799300 5880700 0 0 0 0 0 0 0 0 0 26046 4362 27431 138503;138504 139285;139286 139285 2 NMFAIWR FEMMRLTINRSMDPKNMFAIWRVPAPFKPI INRSMDPKNMFAIWRVPAPFKPITRKSVGH K N M W R V 1 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 7 0 936.46399 Q9NX20;E9PI14 Q9NX20 117 123 MRPL16 39S ribosomal protein L16, mitochondrial yes no 2 0.025249 54.525 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1731 1.1207 11.207 4 Median 1.1454 1.0804 NaN 1 0 Median 1.5227 1.302 NaN 1 0 Median 1.0688 1.0006 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2015 1.1625 NaN 1 0 Median NaN NaN NaN 0 0 Median 4805300 2102900 2702400 2478500 1119200 1359200 398390 130270 268120 1359000 646900 712100 0 0 0 569480 206540 362950 0 0 0 26047 4155 27432 138505;138506;138507;138508 139287;139288 139288 2 NMFHPMDFEDDPLVLNEIR AGPSRMRHERVVIIKNMFHPMDFEDDPLVL PMDFEDDPLVLNEIREDLRVECSKFGQIRK K N M I R E 0 1 2 3 0 0 2 0 1 1 2 0 2 2 2 0 0 0 0 1 0 0 19 0 2331.0664 O43719 O43719 270 288 HTATSF1 HIV Tat-specific factor 1 yes yes 3 0.037033 12.273 By MS/MS 1 0.55519 0.59559 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55519 0.59559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1501400 923730 577620 0 0 0 0 0 0 1501400 923730 577620 0 0 0 0 0 0 0 0 0 26048 1586 27433 138509 139289;139290 139290 2 NMFLQAVK KLSVEEFFMDLHNFRNMFLQAVKENQKRRE MDLHNFRNMFLQAVKENQKRRETEEKMRRA R N M V K E 1 0 1 0 0 1 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 8 0 949.50552 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 1143 1150 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.039296 56.091 By MS/MS 2 1.4272 1.3802 NaN 1 Median 1.4272 1.3802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11338000 4509400 6828800 11338000 4509400 6828800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26049 274 27434 138510;138511 139291;139292 139291 2 NMFLVGEGDSVITQVLNK QVIMEKSTMLYNKFKNMFLVGEGDSVITQV LVGEGDSVITQVLNKSLAEQRQHEEANKTK K N M N K S 0 0 2 1 0 1 1 2 0 1 2 1 1 1 0 1 1 0 0 3 0 0 18 0 1963.0085 O75475 O75475 425 442 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 2.3369E-07 87.001 By MS/MS By matching By MS/MS 3 1 2 0.86599 0.90015 9.9413 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82838 0.8374 8.664 3 0 Median 1.1833 1.0409 NaN 1 0 Median 0.90471 0.90591 6.3156 2 0 Median NaN NaN NaN 0 0 Median 22256000 11851000 10405000 0 0 0 0 0 0 19258000 10347000 8910700 100850 25786 75065 2897900 1478700 1419200 0 0 0 26050 1674 27435;27436 138512;138513;138514;138515;138516;138517 139293;139294;139295;139296;139297 139294 537 5 NMFTNQDR KGKLAPGFDAELIVKNMFTNQDRNGDGKVT DAELIVKNMFTNQDRNGDGKVTAEEFKLKD K N M D R N 0 1 2 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 8 0 1024.4396 O95302;Q75LS8 O95302 540 547 FKBP9;FKBP9P1 Peptidyl-prolyl cis-trans isomerase FKBP9;Putative FK506-binding protein 9-like protein yes no 2 0.0074119 67.169 By matching By MS/MS 1 1 0.87024 0.81526 37.562 2 Median 0.61732 0.6251 NaN 1 0 Median 1.2268 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4282400 2182500 2099900 1773600 1046700 726950 2508800 1135800 1373000 0 0 0 0 0 0 0 0 0 0 0 0 26051 1763 27437 138518;138519 139298;139299 139299 2 NMGGPYGGGNYGPGGSGGSGGYGGR SNYGPMKSGNFGGSRNMGGPYGGGNYGPGG YGPGGSGGSGGYGGRSRY____________ R N M G R S 0 1 2 0 0 0 0 14 0 0 0 0 1 0 2 2 0 0 3 0 0 0 25 0 2188.8981 P22626 P22626 326 350 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 3.5207E-155 286.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 8 8 20 14 0.88787 0.78529 19.321 62 Median 1.0438 1.0413 14.666 5 0 Median 0.99123 0.83579 20.565 7 0 Median 0.72731 0.75071 7.2023 8 0 Median 0.99627 0.80601 4.4624 8 0 Median 0.74331 0.7463 9.1344 20 0 Median 0.96032 0.77955 32.354 14 1 Median 3696300000 2029200000 1667100000 62808000 31811000 30996000 29406000 14662000 14745000 723340000 409480000 313860000 236350000 114570000 121780000 2489000000 1382800000 1106200000 155430000 75917000 79517000 26052 2103 27438;27439 138520;138521;138522;138523;138524;138525;138526;138527;138528;138529;138530;138531;138532;138533;138534;138535;138536;138537;138538;138539;138540;138541;138542;138543;138544;138545;138546;138547;138548;138549;138550;138551;138552;138553;138554;138555;138556;138557;138558;138559;138560;138561;138562;138563;138564;138565;138566;138567;138568;138569;138570;138571;138572;138573;138574;138575;138576;138577;138578;138579;138580;138581 139300;139301;139302;139303;139304;139305;139306;139307;139308;139309;139310;139311;139312;139313;139314;139315;139316;139317;139318;139319;139320;139321;139322;139323;139324;139325;139326;139327;139328;139329;139330;139331;139332;139333;139334;139335;139336;139337;139338;139339;139340;139341;139342;139343;139344;139345;139346;139347;139348;139349;139350;139351;139352;139353;139354;139355;139356;139357;139358;139359;139360;139361;139362;139363;139364;139365;139366;139367;139368;139369;139370;139371;139372;139373;139374;139375;139376;139377;139378;139379;139380;139381;139382;139383;139384;139385;139386;139387;139388;139389;139390;139391;139392;139393;139394;139395;139396;139397;139398;139399;139400;139401;139402;139403;139404;139405;139406;139407;139408;139409;139410;139411;139412;139413;139414;139415;139416;139417;139418;139419;139420;139421;139422;139423;139424;139425;139426;139427;139428;139429;139430;139431;139432;139433;139434;139435;139436;139437;139438 139334 862 139 NMGKPAQPALSR STFSPSLALNIIQNRNMGKPAQPALSREEL QNRNMGKPAQPALSREELEALFLPYDLKRL R N M S R E 2 1 1 0 0 1 0 1 0 0 1 1 1 0 2 1 0 0 0 0 0 0 12 1 1268.6659 Q9H0A0;A0A087WV29 Q9H0A0 799 810 NAT10 N-acetyltransferase 10 yes no 3 0.010481 27.137 By matching By matching By MS/MS 1 1 1 0.96866 0.99988 10.834 3 Median NaN NaN NaN 0 0 Median 0.96866 0.92382 NaN 1 0 Median 0.87241 0.99988 NaN 1 0 Median 1.191 1.1446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2198900 1018700 1180200 0 0 0 1220900 520910 699960 379750 207610 172140 598250 290180 308070 0 0 0 0 0 0 26053 3921 27440 138582;138583;138584 139439 139439 1 NMGLYGER IEQGINVCLCQSYAKNMGLYGERVGAFTMV LCQSYAKNMGLYGERVGAFTMVCKDADEAK K N M E R V 0 1 1 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 8 0 938.428 P00505 P00505 280 287 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0035928 86.794 By matching By MS/MS By matching 1 1 1 1.355 1.1895 10.472 3 Plateau 1.1234 1.1152 NaN 1 0 Median 1.3638 1.1895 NaN 1 0 Median 0.89418 0.96923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22814000 9975300 12839000 7096800 3231700 3865100 12464000 5065300 7399000 3253200 1678300 1575000 0 0 0 0 0 0 0 0 0 26054 1823 27441 138585;138586;138587 139440;139441 139440 2 NMGSWASLVQK EPKTPVAPKKDLKIKNMGSWASLVQKHPTT LKIKNMGSWASLVQKHPTTPSSTAKSSSDS K N M Q K H 1 0 1 0 0 1 0 1 0 0 1 1 1 0 0 2 0 1 0 1 0 0 11 0 1219.6019 O60885 O60885 1198 1208 BRD4 Bromodomain-containing protein 4 yes yes 2 0.032477 47.869 By MS/MS 1 0.91902 1.0233 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91902 1.0233 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5574800 2833600 2741100 0 0 0 0 0 0 5574800 2833600 2741100 0 0 0 0 0 0 0 0 0 26055 1638 27442 138588 139442 139442 1 NMGYVQQR IVGTAGRRVLVWDLRNMGYVQQRRESSLKY VLVWDLRNMGYVQQRRESSLKYQTRCIRAF R N M Q R R 0 1 1 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 8 0 994.46545 O43684;J3QT28 O43684 166 173 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.005254 76.847 By matching By MS/MS By MS/MS 1 1 2 1.1757 1.1472 10.595 4 Median 1.1937 1.2214 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0943 1.0776 NaN 1 0 Median 1.3134 1.1181 15.866 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6884100 3166300 3717800 463000 212210 250790 0 0 0 2933700 1353500 1580100 3487500 1600600 1886900 0 0 0 0 0 0 26056 1357 27443 138589;138590;138591;138592 139443;139444;139445 139444 3 NMINIISR ILRKSLQAERNKPTKNMINIISRLQEVFGH ERNKPTKNMINIISRLQEVFGHAIKAAYPD K N M S R L 0 1 2 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 8 0 959.52224 P54136;E5RJM9;E5RH09 P54136 72 79 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.003932 84.498 By MS/MS By MS/MS 1 1 1.5825 1.4305 16.066 2 Median 1.6965 1.6026 NaN 1 0 Median 1.4763 1.2769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33884000 12400000 21484000 22054000 7768100 14286000 11829000 4631700 7197400 0 0 0 0 0 0 0 0 0 0 0 0 26057 2480 27444 138593;138594 139446;139447;139448;139449 139447 4 NMINTFVPSGK LDKAPVLKVIVNSLKNMINTFVPSGKIMQV NSLKNMINTFVPSGKIMQVVDEKLPGLLGN K N M G K I 0 0 2 0 0 0 0 1 0 1 0 1 1 1 1 1 1 0 0 1 0 0 11 0 1206.6067 Q13510;A0A1B0GTP7;A0A1B0GUH5;A0A1B0GTZ5;A0A1B0GTM3;A0A1B0GUA4;A0A1B0GW68;E7EMM4;A0A1B0GUW4;A0A1B0GUE3;A0A1B0GVG2;A0A1B0GUB3;A0A1B0GU06;A0A1B0GU62;A0A1B0GVJ1;A0A1B0GW48;A0A1B0GV95;A0A1B0GVA3;A0A1B0GVE7;A0A1B0GUJ3;A0A1B0GW66 Q13510 82 92 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 2 0.0048567 47.187 By MS/MS 1 1.2873 1.171 NaN 1 Median 1.2873 1.171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11925000 5117600 6807000 11925000 5117600 6807000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26058 319 27445 138595 139450 139450 1 NMLAFSSPAAGGVCEPLKSPQR GGNFPSFPHDEVTDRNMLAFSSPAAGGVCE PAAGGVCEPLKSPQRAEADDPQDMACTPSG R N M Q R A 3 1 1 0 1 1 1 2 0 0 2 1 1 1 3 3 0 0 0 1 0 0 22 1 2316.1355 Q9UHF7;H0YC29;E5RJ97 Q9UHF7 109 130 TRPS1 Zinc finger transcription factor Trps1 yes no 3 0.069076 7.5332 By MS/MS 1 1.0247 1.0238 NaN 1 Median 1.0247 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6065900 2866000 3199900 6065900 2866000 3199900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26059 4278 27446 138596 139451 139451 1 NMLFSGTNIAAGK TDPVPDPRAVNQDKKNMLFSGTNIAAGKAM KKNMLFSGTNIAAGKAMGVVVATGVNTEIG K N M G K A 2 0 2 0 0 0 0 2 0 1 1 1 1 1 0 1 1 0 0 0 0 0 13 0 1322.6653 P16615;H7C5W9;O14983 P16615 206 218 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 5.2583E-06 97.456 By MS/MS By MS/MS 2 2 1.2106 1.1444 11.168 4 Median 1.0639 1.0238 15.317 2 1 Median 1.2962 1.1521 0.53089 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49563000 21577000 27987000 22631000 10777000 11854000 26933000 10800000 16133000 0 0 0 0 0 0 0 0 0 0 0 0 26060 2031 27447 138597;138598;138599;138600 139452;139453;139454;139455;139456 139453 5 NMLLTLEQEAKR NEDLHKLWYVLLKERNMLLTLEQEAKRQRL KERNMLLTLEQEAKRQRLPMPSPERLDKVV R N M K R Q 1 1 1 0 0 1 2 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 12 1 1444.7708 Q9HD33 Q9HD33 110 121 MRPL47 39S ribosomal protein L47, mitochondrial yes yes 2;3 0.00086675 68.893 By MS/MS By matching By matching By matching 2 3 1 1 0.97015 0.99146 38.819 7 Median 0.85506 0.89318 25.323 2 0 Median 1.1728 1.1207 50.413 3 0 Plateau 0.97015 0.99146 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2974 1.4544 NaN 1 0 Median NaN NaN NaN 0 0 Median 27322000 14900000 12421000 25157000 13856000 11301000 913840 457440 456410 790220 373290 416930 0 0 0 460410 213370 247030 0 0 0 26061 4035 27448 138601;138602;138603;138604;138605;138606;138607 139457;139458 139458 2 NMLQFNLQILPK MRFAQRNLRRDKDRRNMLQFNLQILPKSAK DRRNMLQFNLQILPKSAKQKERERIRLQKK R N M P K S 0 0 2 0 0 2 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 12 0 1457.8065 O15371;B0QYA5;B0QYA6 O15371 113 124 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.00010668 91.069 By matching By MS/MS 1 2 0.95876 0.86075 10.004 2 Median 0.96222 0.92385 NaN 1 0 Median 0.9553 0.80197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12618000 6141800 6476200 4115200 1967600 2147600 8502800 4174300 4328600 0 0 0 0 0 0 0 0 0 0 0 0 26062 1540 27449 138608;138609;138610 139459;139460 139459 2 NMLSQVNYR VDRNREDRISAKDLKNMLSQVNYRVPNMRF SAKDLKNMLSQVNYRVPNMRFLRERLTDLE K N M Y R V 0 1 2 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 9 0 1123.5444 P19174 P19174 179 187 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.015183 43.808 By MS/MS By MS/MS 2 1 1.5659 1.3352 51.189 3 Median 1.7629 1.6316 70.517 2 0 Median 1.5659 1.3352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8326500 4319400 4007100 5076600 3032900 2043800 3249900 1286600 1963300 0 0 0 0 0 0 0 0 0 0 0 0 26063 2062 27450 138611;138612;138613 139461;139462;139463 139461 3 NMLTEELYGNTFQLYK IVEYAYNDKAILEQRNMLTEELYGNTFQLY MLTEELYGNTFQLYKSADHRTLDKVLEVQP R N M Y K S 0 0 2 0 0 1 2 1 0 0 3 1 1 1 0 0 2 0 2 0 0 0 16 0 1962.9397 Q15397 Q15397 269 284 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.00017035 50.284 By matching By matching By MS/MS 1 1 2 1.1356 1.125 17.27 4 Median NaN NaN NaN 0 0 Median 1.0805 0.95469 NaN 1 0 Median 1.3622 1.4503 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1356 1.125 0.61643 2 0 Median NaN NaN NaN 0 0 Median 11019000 5203100 5815800 0 0 0 697920 350700 347220 557670 241800 315860 0 0 0 9763300 4610600 5152700 0 0 0 26064 2947 27451 138614;138615;138616;138617 139464;139465 139465 2 NMMAACDPR ALTVPELTQQMFDAKNMMAACDPRHGRYLT QMFDAKNMMAACDPRHGRYLTVAAVFRGRM K N M P R H 2 1 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 9 0 1064.4202 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;P68371;Q3ZCM7;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 298 306 TUBB3;TUBB4A;TUBB;TUBB8;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2 0.0008527 94.302 By MS/MS By MS/MS By matching 2 5 1 1.0032 0.87203 24.549 7 Median 0.88762 0.86217 14.13 2 0 Median 1.0215 0.8608 12.243 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5629 1.5764 NaN 1 0 Median NaN NaN NaN 0 0 Median 50271000 23756000 26515000 7700700 3666200 4034500 39714000 19208000 20506000 0 0 0 0 0 0 2856000 881730 1974200 0 0 0 26065 2634;1887;3849;2844;1849;3838;216 27452;27453 138618;138619;138620;138621;138622;138623;138624;138625 139466;139467;139468;139469;139470 139468 91 5 NMNLPEIPR AGLAGAPARAVSAVKNMNLPEIPRNINIGD AVSAVKNMNLPEIPRNINIGDISIKVPNLP K N M P R N 0 1 2 0 0 0 1 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 9 0 1082.5543 Q92572 Q92572 167 175 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.00090662 91.318 By MS/MS By matching 1 1 0.88521 0.79258 1.1482 2 Median 0.82768 0.79904 NaN 1 0 Median 0.94674 0.78617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17642000 11222000 6419500 15753000 10221000 5532300 1888100 1000900 887230 0 0 0 0 0 0 0 0 0 0 0 0 26066 3537 27454 138626;138627 139471 139471 1 NMPGLSAATLASLGGTSSR VEERPEKDFTEKGSRNMPGLSAATLASLGG LSAATLASLGGTSSRRGSGDTSISIDTEAS R N M S R R 3 1 1 0 0 0 0 3 0 0 3 0 1 0 1 4 2 0 0 0 0 0 19 0 1789.8992 Q32MZ4;C9JTC6 Q32MZ4 99 117 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes no 2 0.0073983 42.209 By MS/MS 1 1.1744 1.1356 NaN 1 Median 1.1744 1.1356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4103800 1957900 2145900 4103800 1957900 2145900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26067 3006 27455 138628 139472 139472 1 NMPQADAMVLVAR SCTVNIMFGTPQEHRNMPQADAMVLVARNY HRNMPQADAMVLVARNYERYKNECREKERE R N M A R N 3 1 1 1 0 1 0 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 13 0 1414.7061 Q9HCD5 Q9HCD5 280 292 NCOA5 Nuclear receptor coactivator 5 yes yes 2 8.0804E-06 96.89 By MS/MS By matching By MS/MS By matching 2 3 3 2 0.76636 0.69818 27.619 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72106 0.75221 10.542 2 0 Median 0.82245 1.0637 41.952 3 0 Plateau 0.66075 0.66172 3.3674 2 1 Median 0.72701 0.62388 4.9568 2 0 Median 30985000 17738000 13247000 0 0 0 0 0 0 10398000 6012800 4385400 2479400 1179900 1299500 17358000 10088000 7270000 749630 457520 292100 26068 4028 27456;27457;27458 138629;138630;138631;138632;138633;138634;138635;138636;138637;138638 139473;139474;139475;139476;139477;139478 139477 1864;1865 6 NMPSKTELIVR LGPHMLRRLKADVFKNMPSKTELIVRVELS DVFKNMPSKTELIVRVELSPMQKKYYKYIL K N M V R V 0 1 1 0 0 0 1 0 0 1 1 1 1 0 1 1 1 0 0 1 0 0 11 1 1286.7017 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 965 975 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.00077499 53.569 By matching By MS/MS 1 1 0.8792 1.0246 19.267 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9791 1.1741 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78949 0.89407 NaN 1 0 Median NaN NaN NaN 0 0 Median 12108000 6256600 5851800 0 0 0 0 0 0 5836700 3099800 2736900 0 0 0 6271700 3156800 3114800 0 0 0 26069 246 27459 138639;138640 139479;139480 139480 2 NMQDMVEDYR DQLKSDQSRLDSELKNMQDMVEDYRNKYED DSELKNMQDMVEDYRNKYEDEINKRTNAEN K N M Y R N 0 1 1 2 0 1 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 10 0 1299.5224 P04264;CON__P04264 P04264 258 267 KRT1 Keratin, type II cytoskeletal 1 yes no 2 7.6095E-26 172.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 21 17 22 42 14 6 0.010231 0.0088793 193.68 32 Median 0.011673 0.0111 211.4 4 4 Median 0.026071 0.021963 143.47 5 5 Median 0.017017 0.018549 148.26 5 5 Median 0.0059932 0.0050002 217.92 12 12 Median 0.014573 0.014925 334.67 2 2 Median 0.0021492 0.0016976 220.44 4 4 Median 1408100000 1402600000 5527800 417740000 415950000 1790600 147940000 147660000 282320 319740000 317820000 1917000 276300000 275200000 1101300 195980000 195810000 169620 50394000 50127000 266900 + 26070 1848 27460;27461;27462 138641;138642;138643;138644;138645;138646;138647;138648;138649;138650;138651;138652;138653;138654;138655;138656;138657;138658;138659;138660;138661;138662;138663;138664;138665;138666;138667;138668;138669;138670;138671;138672;138673;138674;138675;138676;138677;138678;138679;138680;138681;138682;138683;138684;138685;138686;138687;138688;138689;138690;138691;138692;138693;138694;138695;138696;138697;138698;138699;138700;138701;138702;138703;138704;138705;138706;138707;138708;138709;138710;138711;138712;138713;138714;138715;138716;138717;138718;138719;138720;138721;138722;138723;138724;138725;138726;138727;138728;138729;138730;138731;138732;138733;138734;138735;138736;138737;138738;138739;138740;138741;138742;138743;138744;138745;138746;138747;138748;138749;138750;138751;138752;138753;138754;138755;138756;138757;138758;138759;138760;138761;138762 139481;139482;139483;139484;139485;139486;139487;139488;139489;139490;139491;139492;139493;139494;139495;139496;139497;139498;139499;139500;139501;139502;139503;139504;139505;139506;139507;139508;139509;139510;139511;139512;139513;139514;139515;139516;139517;139518;139519;139520;139521;139522;139523;139524;139525;139526;139527;139528;139529;139530;139531;139532;139533;139534;139535;139536;139537;139538;139539;139540;139541;139542;139543;139544;139545;139546;139547;139548;139549;139550;139551;139552;139553;139554;139555;139556;139557;139558;139559;139560;139561;139562;139563;139564;139565;139566;139567;139568;139569;139570;139571;139572;139573;139574;139575;139576;139577;139578;139579;139580;139581;139582;139583;139584;139585;139586;139587;139588;139589;139590;139591;139592;139593;139594;139595;139596;139597;139598;139599;139600;139601;139602;139603;139604;139605 139548 604;605 125 NMQDMVEDYRNK DQLKSDQSRLDSELKNMQDMVEDYRNKYED ELKNMQDMVEDYRNKYEDEINKRTNAENEF K N M N K Y 0 1 2 2 0 1 1 0 0 0 0 1 2 0 0 0 0 0 1 1 0 0 12 1 1541.6603 P04264;CON__P04264 P04264 258 269 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.0040508 53.252 By MS/MS By MS/MS 1 1 0.10163 0.11493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10163 0.11493 NaN 1 1 Median NaN NaN NaN 0 0 Median 8374600 8261800 112750 4824600 4824600 0 0 0 0 0 0 0 0 0 0 3550000 3437300 112750 0 0 0 + 26071 1848 27463 138763;138764 139606;139607 139606 2 NMQLPNGVTYHTGTYQDR QDIVYRTMEIFQLLRNMQLPNGVTYHTGTY LPNGVTYHTGTYQDRLTKLQDNLRQLSVLF R N M D R L 0 1 2 1 0 2 0 2 1 0 1 0 1 0 1 0 3 0 2 1 0 0 18 0 2093.9589 Q96HR3 Q96HR3 57 74 MED30 Mediator of RNA polymerase II transcription subunit 30 yes yes 3 4.3745E-06 51.193 By MS/MS 1 0.8169 0.78251 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8169 0.78251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4712900 2444000 2268900 0 0 0 0 0 0 4712900 2444000 2268900 0 0 0 0 0 0 0 0 0 26072 3668 27464 138765 139608 139608 1802 1 NMQNVEHVPLSLDR SAMLQPLLDNQVGFKNMQNVEHVPLSLDRA KNMQNVEHVPLSLDRAMRLVKDVFISAAER K N M D R A 0 1 2 1 0 1 1 0 1 0 2 0 1 0 1 1 0 0 0 2 0 0 14 0 1650.8148 P20618 P20618 185 198 PSMB1 Proteasome subunit beta type-1 yes yes 2;3 1.4691E-23 199.12 By MS/MS By MS/MS 1 1 0.38721 0.36891 NaN 1 Median 0.38721 0.36891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154530000 85306000 69219000 154530000 85306000 69219000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26073 2081 27465;27466 138766;138767 139609;139610;139611 139609 839 3 NMSGSLYEMVSR NEEEVEKRFEGRLTKNMSGSLYEMVSRVMK LTKNMSGSLYEMVSRVMKALVNRKITVPGN K N M S R V 0 1 1 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 1 1 0 0 12 0 1372.6115 Q08945 Q08945 305 316 SSRP1 FACT complex subunit SSRP1 yes yes 2 4.3444E-06 123.79 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 5 4 1.2908 1.136 20.506 14 Median 0.88084 0.83358 NaN 1 0 Median 0.81231 0.70509 NaN 1 0 Median 1.2845 1.3332 NaN 1 0 Median 1.1976 1.0444 6.1373 2 0 Median 1.338 1.3485 9.1992 5 1 Median 1.3762 1.1045 3.4177 4 0 Linear 59321000 25243000 34078000 8325700 4236100 4089600 2374000 1517100 856880 5969600 2709400 3260100 1097100 478140 618960 38274000 14947000 23327000 3280200 1354900 1925300 26074 2743 27467 138768;138769;138770;138771;138772;138773;138774;138775;138776;138777;138778;138779;138780;138781 139612;139613;139614;139615;139616;139617;139618;139619;139620;139621 139616 10 NMSIIDAFK STRSRNSKTAVSASRNMSIIDAFKSTRQQP AVSASRNMSIIDAFKSTRQQPSRNVTTKNY R N M F K S 1 0 1 1 0 0 0 0 0 2 0 1 1 1 0 1 0 0 0 0 0 0 9 0 1037.5216 P49959;F8W7U8 P49959 617 625 MRE11A Double-strand break repair protein MRE11A yes no 2 0.016192 42.869 By matching By MS/MS 1 3 1.0938 1.1332 23.152 4 Median NaN NaN NaN 0 0 Median 1.5042 1.296 NaN 1 0 Median 1.0731 1.1184 23.142 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14810000 7624100 7185800 0 0 0 93081 36938 56144 14717000 7587100 7129700 0 0 0 0 0 0 0 0 0 26075 2407 27468 138782;138783;138784;138785 139622;139623;139624;139625 139623 4 NMSPDLR FDRINENDPEYIRERNMSPDLRQDFNMMEQ DPEYIRERNMSPDLRQDFNMMEQRKRVTQI R N M L R Q 0 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 7 0 831.39089 Q9UEY8 Q9UEY8 40 46 ADD3 Gamma-adducin yes yes 2 0.044421 42.914 By MS/MS By MS/MS 1 1 0.86035 0.81729 2.2498 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78274 0.83039 NaN 1 0 Median 0.94565 0.80439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3643400 2003800 1639600 0 0 0 0 0 0 3164000 1775900 1388100 479410 227890 251520 0 0 0 0 0 0 26076 4257 27469 138786;138787 139626;139627;139628 139627 3 NMSVHLSPCFR LHYIRKYNRFEKRHKNMSVHLSPCFR____ KRHKNMSVHLSPCFR_______________ K N M F R - 0 1 1 0 1 0 0 0 1 0 1 0 1 1 1 2 0 0 0 1 0 0 11 0 1346.6224 M0QZC5;P62280;M0R1H5 M0QZC5 108 118 RPS11 40S ribosomal protein S11 yes no 2;3 0.00017784 93.111 By MS/MS By MS/MS 2 5 1.0486 0.94199 11.145 7 Median 1.0219 0.98601 6.4595 2 0 Median 1.0833 0.8973 11.64 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62230000 30830000 31400000 13151000 6263600 6887200 49080000 24566000 24513000 0 0 0 0 0 0 0 0 0 0 0 0 26077 1422 27470;27471 138788;138789;138790;138791;138792;138793;138794 139629;139630;139631;139632;139633;139634;139635 139634 456 7 NMSVIAHVDHGK VDQIRAIMDKKANIRNMSVIAHVDHGKSTL NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA R N M G K S 1 0 1 1 0 0 0 1 2 1 0 1 1 0 0 1 0 0 0 2 0 0 12 0 1306.6452 P13639 P13639 21 32 EEF2 Elongation factor 2 yes yes 2;3 1.6158E-09 174.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 26 25 9 12 6 6 1.0061 0.89147 29.52 83 Median 1.1595 1.0986 26.926 25 2 Median 0.94106 0.83841 7.642 25 2 Median 1.0248 1.043 18.439 9 0 Median 1.1796 1.0198 24.227 12 1 Plateau 1.6428 1.7112 33.507 6 0 Median 0.91644 0.76089 10.19 6 0 Median 930810000 452500000 478310000 194140000 87512000 106630000 627000000 312940000 314070000 34516000 15557000 18959000 61807000 31120000 30687000 7887300 2611400 5276000 5451300 2767800 2683500 26078 1992 27472;27473 138795;138796;138797;138798;138799;138800;138801;138802;138803;138804;138805;138806;138807;138808;138809;138810;138811;138812;138813;138814;138815;138816;138817;138818;138819;138820;138821;138822;138823;138824;138825;138826;138827;138828;138829;138830;138831;138832;138833;138834;138835;138836;138837;138838;138839;138840;138841;138842;138843;138844;138845;138846;138847;138848;138849;138850;138851;138852;138853;138854;138855;138856;138857;138858;138859;138860;138861;138862;138863;138864;138865;138866;138867;138868;138869;138870;138871;138872;138873;138874;138875;138876;138877;138878 139636;139637;139638;139639;139640;139641;139642;139643;139644;139645;139646;139647;139648;139649;139650;139651;139652;139653;139654;139655;139656;139657;139658;139659;139660;139661;139662;139663;139664;139665;139666;139667;139668;139669;139670;139671;139672;139673;139674;139675;139676;139677;139678;139679;139680;139681;139682;139683;139684;139685;139686;139687;139688;139689;139690;139691;139692;139693;139694;139695;139696;139697;139698;139699;139700;139701;139702;139703;139704;139705;139706;139707;139708;139709;139710;139711;139712;139713;139714;139715;139716;139717;139718;139719;139720;139721;139722 139674 776 87 NMSYQGFTK TVNGDIFICTQKAARNMSYQGFTKDNGVVP TQKAARNMSYQGFTKDNGVVPVVKELMGEE R N M T K D 0 0 1 0 0 1 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 0 9 0 1074.4804 Q9P2J5 Q9P2J5 333 341 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0048762 59.35 By MS/MS By MS/MS 1 1 1.3446 1.2243 4.8483 2 Median 1.2113 1.1831 NaN 1 0 Median 1.4925 1.267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11239000 4847600 6391400 4742800 2233300 2509400 6496300 2614300 3882000 0 0 0 0 0 0 0 0 0 0 0 0 26079 4224 27474 138879;138880 139723;139724 139723 2 NMTPSPFLR QIQYKNPWVQIMMFKNMTPSPFLRFYLDSG QIMMFKNMTPSPFLRFYLDSGEQVLVDVET K N M L R F 0 1 1 0 0 0 0 0 0 0 1 0 1 1 2 1 1 0 0 0 0 0 9 0 1061.5328 P82663;E7EPW2 P82663 69 77 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2 0.0011629 84.568 By MS/MS By MS/MS 1 1 0.7413 0.71682 17.645 2 Median 0.64602 0.63274 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85064 0.81208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11047000 6631100 4416100 7289000 4547200 2741800 0 0 0 3758200 2084000 1674200 0 0 0 0 0 0 0 0 0 26080 2651 27475 138881;138882 139725;139726 139725 2 NMTVEQLLTGSPTSPTVEPEKPTR FRELKEAIKILESLKNMTVEQLLTGSPTSP GSPTSPTVEPEKPTREKKFLDDIKKLQENL K N M T R E 0 1 1 0 0 1 3 1 0 0 2 1 1 0 4 2 5 0 0 2 0 0 24 1 2611.3163 Q9C0C9;K7ES11 Q9C0C9 826 849 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 3 1.6037E-21 97.974 By MS/MS By matching By matching 1 1 1 0.72877 0.69806 27.138 3 Median 0.6387 0.6417 NaN 1 0 Median 0.72877 0.69806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.103 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12616000 7750100 4865700 11223000 6994000 4229200 1231600 648850 582760 0 0 0 160890 107200 53691 0 0 0 0 0 0 26081 3904 27476 138883;138884;138885 139727;139728 139728 2 NMVLFTR KSYHQAHKATGGPLKNMVLFTRQRLSIQPL KATGGPLKNMVLFTRQRLSIQPLTQEEFDF K N M T R Q 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 7 0 879.46366 Q9P016 Q9P016 194 200 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.013611 76.035 By matching By MS/MS By MS/MS 1 1 2 0.95343 0.8878 7.7011 4 Median 0.97223 0.93789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9091 0.87353 NaN 1 0 Median 1.0101 0.84107 9.9381 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14747000 7656400 7090200 2456200 1258800 1197400 0 0 0 10009000 5387200 4622200 2281000 1010400 1270600 0 0 0 0 0 0 26082 4198 27477 138886;138887;138888;138889 139729;139730;139731;139732 139729 4 NMVPQQALVIR YYQEAKSSKIMESFKNMVPQQALVIRNGEK ESFKNMVPQQALVIRNGEKMSINAEEVVVG K N M I R N 1 1 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 2 0 0 11 0 1267.7071 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;Q13733;Q5TC01;M0QXF2;E9PRA5 P05023 163 173 ATP1A1;ATP1A3;ATP1A2;ATP1A4 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4 yes no 2 0.00014307 117.04 By MS/MS By MS/MS By matching By matching 5 4 1 1 0.94503 0.89398 51.738 11 Median 0.88388 0.89398 71.645 5 2 Median 1.2442 1.0607 24.341 4 1 Median 0.82618 0.85382 NaN 1 0 Median 0.90882 0.8045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 231980000 147640000 84344000 165790000 115720000 50065000 61570000 29524000 32047000 3725100 1998000 1727200 902030 396360 505660 0 0 0 0 0 0 26083 1857 27478;27479 138890;138891;138892;138893;138894;138895;138896;138897;138898;138899;138900 139733;139734;139735;139736;139737;139738;139739;139740 139736 617 8 NMVQTAVVPVK IINPEDVDPSVGRFRNMVQTAVVPVKKKRV GRFRNMVQTAVVPVKKKRVEGPGSLGLEES R N M V K K 1 0 1 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 4 0 0 11 0 1184.6587 Q12972;A0A0A0MT09 Q12972 224 234 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2 0.00013837 98.033 By MS/MS By MS/MS 2 2 0.96398 0.90356 8.538 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84821 0.85345 10.835 2 0 Median 1.0885 0.92486 6.0593 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47600000 23722000 23879000 0 0 0 0 0 0 42760000 21547000 21213000 4840200 2174400 2665800 0 0 0 0 0 0 26084 2775 27480 138901;138902;138903;138904 139741;139742 139742 2 NMVQTAVVPVKK IINPEDVDPSVGRFRNMVQTAVVPVKKKRV RFRNMVQTAVVPVKKKRVEGPGSLGLEESG R N M K K K 1 0 1 0 0 1 0 0 0 0 0 2 1 0 1 0 1 0 0 4 0 0 12 1 1312.7537 Q12972;A0A0A0MT09 Q12972 224 235 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2;3 6.9578E-06 101.65 By matching By MS/MS By MS/MS 1 3 3 0.94857 0.90579 10.205 7 Median NaN NaN NaN 0 0 Median 1.0763 0.98032 NaN 1 0 Median 0.87315 0.95149 9.8163 3 0 Plateau 0.97544 0.86858 13.019 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25138000 12754000 12384000 0 0 0 441970 203800 238170 18318000 9615000 8702700 6378000 2935000 3443000 0 0 0 0 0 0 26085 2775 27481 138905;138906;138907;138908;138909;138910;138911 139743;139744;139745;139746;139747;139748;139749 139745 7 NMVSILSSFESR SFIRDSLEKSDQLTKNMVSILSSFESRLMK LTKNMVSILSSFESRLMKLENSIIPVHKQT K N M S R L 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 4 0 0 0 1 0 0 12 0 1368.6708 A0A0A0MSB8;Q9UPT5;B5MCY9;K7ERQ5 A0A0A0MSB8 41 52 EXOC7 Exocyst complex component 7 yes no 2 0.0014082 53.683 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.3499 1.1625 26.463 4 Median NaN NaN NaN 0 0 Median 1.284 1.1266 NaN 1 0 Median 1.0862 1.1551 NaN 1 0 Median 1.4191 1.1699 NaN 1 0 Median 1.8396 1.9512 NaN 1 0 Median NaN NaN NaN 0 0 Median 4453700 2045500 2408200 0 0 0 675310 274970 400340 2971400 1436500 1534900 116880 42328 74557 690090 291710 398380 0 0 0 26086 179 27482 138912;138913;138914;138915 139750;139751 139750 1 NMVVYAGVEEQPK CFVEKTHWGYYTWPKNMVVYAGVEEQPKLG PKNMVVYAGVEEQPKLGRSREDMTEAEQII K N M P K L 1 0 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 1 3 0 0 13 0 1462.7126 Q14997 Q14997 1282 1294 PSME4 Proteasome activator complex subunit 4 yes yes 2 0.001095 59.426 By MS/MS By matching 1 1 0.99137 0.87449 17.151 2 Median NaN NaN NaN 0 0 Median 0.87426 0.77461 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1242 0.98724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4742700 2340500 2402200 0 0 0 2414500 1319500 1094900 0 0 0 2328300 1021000 1307300 0 0 0 0 0 0 26087 2906 27483 138916;138917 139752;139753 139752 2 NMYELHK NESEDEVAVDMEFAKNMYELHKKVSPNELI AVDMEFAKNMYELHKKVSPNELILGWYATG K N M H K K 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 7 0 933.43784 O00303 O00303 155 161 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.031276 49.358 By matching By MS/MS By matching By matching 1 2 1 1 1.0654 1.0368 9.0805 5 Median 1.0654 1.0368 NaN 1 0 Median 1.2169 1.0437 2.3486 2 0 Median 1.0213 1.0589 NaN 1 0 Median 0.9589 0.85566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7873700 3627400 4246300 1692600 929170 763420 4754100 2006700 2747500 909640 431640 478000 517280 259920 257360 0 0 0 0 0 0 26088 1457 27484 138918;138919;138920;138921;138922 139754;139755 139754 2 NNALNQVVLWDK VKQLFLYLSAEYSTKNNALNQVVLWDKIVL STKNNALNQVVLWDKIVLRGDNPKLLLKDM K N N D K I 1 0 3 1 0 1 0 0 0 0 2 1 0 0 0 0 0 1 0 2 0 0 12 0 1412.7412 P61009 P61009 97 108 SPCS3 Signal peptidase complex subunit 3 yes yes 2 0.00015559 87.568 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1.2962 1.1003 7.1452 6 Median 1.2055 1.1128 NaN 1 0 Median 1.2962 1.105 2.2024 2 0 Median 1.154 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4435 1.1738 13.835 2 0 Median 84327000 37721000 46605000 61064000 27397000 33667000 6053500 2729200 3324300 15926000 7079700 8846700 0 0 0 0 0 0 1282800 515740 767070 26089 2536 27485 138923;138924;138925;138926;138927;138928 139756;139757;139758;139759;139760;139761 139759 6 NNASTDYDLSDK KIGQGYLIKDGKLIKNNASTDYDLSDKSIN LIKNNASTDYDLSDKSINPLGGFVHYGEVT K N N D K S 1 0 2 3 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 12 0 1341.5685 P39023;G5E9G0;B5MCW2 P39023 301 312 RPL3 60S ribosomal protein L3 yes no 2 4.7077E-06 141.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 2 2 2 1.1551 1.0541 16.375 17 Median 1.024 1.0256 8.9263 5 0 Median 1.0743 0.95313 6.0837 5 0 Median 1.0967 1.0959 NaN 1 0 Median 1.3404 1.166 5.937 2 0 Median 1.2487 1.2206 6.8837 2 0 Median 1.7723 1.4686 17.732 2 1 Median 119430000 55216000 64212000 30655000 14898000 15757000 48530000 22558000 25972000 2316400 1128200 1188300 7441100 3248300 4192800 24871000 11276000 13595000 5614500 2107200 3507300 26090 2281 27486 138929;138930;138931;138932;138933;138934;138935;138936;138937;138938;138939;138940;138941;138942;138943;138944;138945 139762;139763;139764;139765;139766;139767;139768;139769;139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780;139781;139782;139783;139784;139785;139786;139787;139788;139789 139772 28 NNAYLAQSPQLYK ASEGGANVFTVSYFKNNAYLAQSPQLYKQM FKNNAYLAQSPQLYKQMCICADFEKVFSIG K N N Y K Q 2 0 2 0 0 2 0 0 0 0 2 1 0 0 1 1 0 0 2 0 0 0 13 0 1508.7623 P14868 P14868 242 254 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 2.0999E-05 94.297 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.847 0.82141 8.7579 5 Median 0.82421 0.82141 NaN 1 0 Median 0.94874 0.81965 14.316 2 0 Median 0.82853 0.82561 NaN 1 0 Median 0.85426 0.73405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19744000 10081000 9663900 6074300 3019200 3055200 5557100 2876500 2680600 6015600 3025100 2990500 2097400 1159700 937670 0 0 0 0 0 0 26091 2012 27487 138946;138947;138948;138949;138950 139790;139791;139792;139793 139791 4 NNDFYVTGESYAGK YSALIQFFQIFPEYKNNDFYVTGESYAGKY KNNDFYVTGESYAGKYVPAIAHLIHSLNPV K N N G K Y 1 0 2 1 0 0 1 2 0 0 0 1 0 1 0 1 1 0 2 1 0 0 14 0 1563.6842 Q9H3G5;C9JLV0;C9J6L4;C9JI22 Q9H3G5 195 208 CPVL Probable serine carboxypeptidase CPVL yes no 2 3.0448E-07 114.86 By MS/MS By MS/MS By MS/MS 3 2 2 0.99035 0.93136 43.756 7 Median 1.0234 0.94628 25.606 3 2 Plateau NaN NaN NaN 0 0 Median 0.75996 0.72999 34.452 2 1 Median 1.9218 1.6858 18.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68669000 33157000 35512000 35025000 17618000 17406000 0 0 0 26005000 13113000 12891000 7639400 2425200 5214200 0 0 0 0 0 0 26092 3952 27488 138951;138952;138953;138954;138955;138956;138957 139794;139795;139796;139797;139798;139799;139800;139801 139797 8 NNEEVTLIR WPGIMESFFTGQNCRNNEEVTLIRKADLEN TGQNCRNNEEVTLIRKADLENHNKDGGFWT R N N I R K 0 1 2 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1086.5669 O95714 O95714 1203 1211 HERC2 E3 ubiquitin-protein ligase HERC2 yes yes 2 0.04898 31.289 By MS/MS 1 1.1938 0.99605 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1938 0.99605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12530000 5611800 6918300 0 0 0 0 0 0 0 0 0 12530000 5611800 6918300 0 0 0 0 0 0 26093 1786 27489 138958 139802 139802 1 NNEVWLIQK YYTAGYNSPVKLLNRNNEVWLIQKNEPTKE VKLLNRNNEVWLIQKNEPTKENE_______ R N N Q K N 0 0 2 0 0 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1142.6084 Q9Y5Z4 Q9Y5Z4 189 197 HEBP2 Heme-binding protein 2 yes yes 2 0.0060753 67.981 By MS/MS By MS/MS By matching 2 2 1 0.92219 0.83768 33.891 5 Median 0.90946 0.84214 2.0054 2 2 Median 0.85969 0.72477 20.474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0005 1.5769 NaN 1 0 Median 53721000 26550000 27172000 50511000 24840000 25671000 2939400 1576000 1363400 0 0 0 0 0 0 0 0 0 271120 133630 137490 26094 4473 27490 138959;138960;138961;138962;138963 139803;139804;139805 139805 3 NNFAVGYR GYQMTFDSAKSKLTRNNFAVGYRTGDFQLH AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE R N N Y R T 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 8 0 939.45626 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1 A0A0A0MR02 178 185 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.0026701 132.96 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3988 1.163 18.204 5 Median 1.0084 0.94117 NaN 1 0 Median 1.5236 1.2562 10.907 2 0 Median NaN NaN NaN 0 0 Median 1.3443 1.1218 NaN 1 0 Median 1.525 1.5104 NaN 1 1 Median NaN NaN NaN 0 0 Median 155110000 68541000 86573000 72912000 34788000 38124000 54180000 22181000 31999000 0 0 0 24309000 10095000 14214000 3712200 1476400 2235800 0 0 0 26095 151 27491 138964;138965;138966;138967;138968 139806;139807;139808;139809;139810;139811;139812 139806 7 NNFEGEVTK DKDGVVLFKKFDEGRNNFEGEVTKENLLDF KFDEGRNNFEGEVTKENLLDFIKHNQLPLV R N N T K E 0 0 2 0 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 9 0 1036.4825 P07237;H7BZ94;I3L398;I3L312;I3L4M2;I3NI03 P07237 214 222 P4HB Protein disulfide-isomerase yes no 2 0.00061082 109.71 By MS/MS By MS/MS 1 2 1.4722 1.2467 12.598 3 Plateau 1.0259 0.98739 NaN 1 0 Median 1.4518 1.2257 2.4009 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26057000 10511000 15546000 2936500 1560500 1375900 23120000 8950500 14170000 0 0 0 0 0 0 0 0 0 0 0 0 26096 1883 27492 138969;138970;138971 139813;139814;139815;139816;139817 139817 5 NNFEGEVTKENLLDFIK DKDGVVLFKKFDEGRNNFEGEVTKENLLDF FEGEVTKENLLDFIKHNQLPLVIEFTEQTA R N N I K H 0 0 3 1 0 0 3 1 0 1 2 2 0 2 0 0 1 0 0 1 0 0 17 1 2009.0106 P07237;H7BZ94;I3L398;I3L312;I3L4M2;I3NI03 P07237 214 230 P4HB Protein disulfide-isomerase yes no 2;3 1.0531E-05 68.069 By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1.3442 1.2804 13.43 9 Median 1.16 1.0856 3.1029 3 0 Median 1.4969 1.408 5.1522 4 0 Median 1.2122 1.2715 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4849 1.5854 NaN 1 0 Median NaN NaN NaN 0 0 Median 50357000 21503000 28854000 40178000 17631000 22548000 5903300 2273300 3630000 3112000 1137900 1974100 0 0 0 1163000 461190 701810 0 0 0 26097 1883 27493 138972;138973;138974;138975;138976;138977;138978;138979;138980 139818;139819;139820;139821;139822;139823;139824 139821 7 NNFLPNADMETR LKSGGLPLVLSMLTRNNFLPNADMETRRGA LTRNNFLPNADMETRRGAYLNALKIAKLLL R N N T R R 1 1 3 1 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 12 0 1420.6405 Q93008 Q93008 1133 1144 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 2.5304E-06 115.78 By MS/MS By MS/MS By matching 2 2 2 0.60228 0.54056 17.47 6 Median 0.64518 0.62277 23.087 2 2 Median 0.69144 0.5731 5.1987 2 0 Median 0.43339 0.47605 14.465 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40108000 24032000 16076000 17982000 10235000 7746700 13469000 7415100 6054300 8657300 6382500 2274800 0 0 0 0 0 0 0 0 0 26098 3573 27494 138981;138982;138983;138984;138985;138986 139825;139826;139827;139828;139829 139826 5 NNGVLFENQLLQIGVK PIPEADELLNKFVCKNNGVLFENQLLQIGV NGVLFENQLLQIGVKSEFRQNLGRMYLFYG K N N V K S 0 0 3 0 0 2 1 2 0 1 3 1 0 1 0 0 0 0 0 2 0 0 16 0 1784.9785 O95782 O95782 751 766 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.00017035 50.284 By MS/MS 1 0.94186 0.83046 NaN 1 Median NaN NaN NaN 0 0 Median 0.94186 0.83046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2607500 1400600 1206900 0 0 0 2607500 1400600 1206900 0 0 0 0 0 0 0 0 0 0 0 0 26099 1793 27495 138987 139830;139831 139831 2 NNIAMALEVTYR QALVQKRHYLFDVQRNNIAMALEVTYRERL VQRNNIAMALEVTYRERLYRVYKEVKNRLD R N N Y R E 2 1 2 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 1 1 0 0 12 0 1393.7024 Q5QNZ2;P24539 Q5QNZ2 111 122 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2 0.017367 52.79 By MS/MS 1 0.89678 0.8463 NaN 1 Median 0.89678 0.8463 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4734600 2548600 2186000 4734600 2548600 2186000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26100 2124 27496 138988 139832 139832 1 NNIIQTWR VSGLYDFGPVGCALKNNIIQTWRQHFIQEE PVGCALKNNIIQTWRQHFIQEEQILEIDCT K N N W R Q 0 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 8 0 1043.5512 P41250 P41250 159 166 GARS Glycine--tRNA ligase yes yes 2 0.00032689 104.21 By MS/MS By MS/MS By matching 2 2 1 1.0347 0.93674 17.254 4 Median 0.96978 0.91758 NaN 1 1 Median 1.1194 0.96829 1.7611 2 0 Median 0.63903 0.67646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19065000 9375200 9689800 11168000 5527300 5640500 6148000 2859600 3288400 1749300 988320 761010 0 0 0 0 0 0 0 0 0 26101 2301 27497 138989;138990;138991;138992;138993 139833;139834;139835;139836;139837 139833 5 NNIKLYVR PRRAPFDLFENRKKKNNIKLYVRRVFIMDN FENRKKKNNIKLYVRRVFIMDNCEELIPEY K N N V R R 0 1 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 1 1018.5924 P07900;P08238;Q58FF7 P07900 359 366 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2 0.062318 53.554 By matching By MS/MS 1 1 1.14 1.1483 5.6202 2 Median 1.086 1.1036 NaN 1 0 Median 1.1966 1.1949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3640500 1690400 1950100 799670 319640 480030 2840900 1370700 1470100 0 0 0 0 0 0 0 0 0 0 0 0 26102 1894;1899 27498 138994;138995 139838 139838 1 NNILTDHFQYSR NGLLFPQHGDYQYGRNNILTDHFQYSRQSY YGRNNILTDHFQYSRQSYPNSYSLNRYDV_ R N N S R Q 0 1 2 1 0 1 0 0 1 1 1 0 0 1 0 1 1 0 1 0 0 0 12 0 1506.7215 Q96K37;H7C1I0 Q96K37 385 396 SLC35E1 Solute carrier family 35 member E1 yes no 2 1.0112E-06 117.67 By MS/MS 1 0.80553 0.80163 NaN 1 Median 0.80553 0.80163 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6444800 4317400 2127400 6444800 4317400 2127400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26103 3689 27499 138996 139839 139839 1 NNIPYFETSAK RQVATKRAQAWCYSKNNIPYFETSAKEAIN CYSKNNIPYFETSAKEAINVEQAFQTIARN K N N A K E 1 0 2 0 0 0 1 0 0 1 0 1 0 1 1 1 1 0 1 0 0 0 11 0 1282.6194 P51149;C9J8S3;C9IZZ0;C9J4V0 P51149 147 157 RAB7A Ras-related protein Rab-7a yes no 2 0.00016746 91.584 By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1.0711 0.92035 42.374 7 Median 0.94369 0.87041 NaN 1 0 Median 1.1132 0.93163 9.3351 3 0 Median 0.90826 0.85389 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5283 2.5888 NaN 1 0 Median 0.87411 0.70958 NaN 1 0 Median 97385000 44698000 52687000 75905000 35610000 40296000 9676900 3550200 6126600 7417300 3474900 3942400 0 0 0 2763200 1377900 1385300 1622000 685240 936760 26104 2428 27500 138997;138998;138999;139000;139001;139002;139003 139840;139841;139842;139843 139841 4 NNKEYLEFR SGGYPALMDCMNKLKNNKEYLEFRRERSQM CMNKLKNNKEYLEFRRERSQMLLSRRNQLL K N N F R R 0 1 2 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 9 1 1211.5935 Q9BPW8;C9JDV8;H7C2U6 Q9BPW8 144 152 NIPSNAP1 Protein NipSnap homolog 1 yes no 2;3 0.00080506 71.451 By MS/MS 3 0.71225 0.74473 22.019 3 Median 0.71225 0.74473 22.019 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18050000 10447000 7602600 18050000 10447000 7602600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26105 3777 27501 139004;139005;139006 139844;139845;139846 139844 3 NNKEYLEFRR SGGYPALMDCMNKLKNNKEYLEFRRERSQM MNKLKNNKEYLEFRRERSQMLLSRRNQLLL K N N R R E 0 2 2 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 10 2 1367.6946 Q9BPW8;C9JDV8;H7C2U6 Q9BPW8 144 153 NIPSNAP1 Protein NipSnap homolog 1 yes no 3 0.0013242 54.608 By MS/MS By MS/MS 2 1 1.283 1.2877 24.187 3 Median 1.0745 1.0783 25.104 2 0 Median 1.5476 1.4332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7293300 3342900 3950400 5123200 2472600 2650600 2170100 870330 1299800 0 0 0 0 0 0 0 0 0 0 0 0 26106 3777 27502 139007;139008;139009 139847;139848;139849;139850 139847 4 NNLAGAEELFAR NVLQNPDLALRMAVRNNLAGAEELFARKFN AVRNNLAGAEELFARKFNALFAQGNYSEAA R N N A R K 3 1 2 0 0 0 2 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1303.6521 A0A087WVQ6;Q00610 A0A087WVQ6 359 370 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 3.3934E-06 119.68 By MS/MS By MS/MS By MS/MS 3 5 1 1.2348 1.0945 20.401 9 Median 1.2984 1.2177 5.8313 3 0 Median 1.2171 1.0759 14.926 5 0 Median 0.65901 0.72432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 379590000 169740000 209850000 218290000 95398000 122890000 130910000 56605000 74310000 30383000 17738000 12645000 0 0 0 0 0 0 0 0 0 26107 44 27503 139010;139011;139012;139013;139014;139015;139016;139017;139018 139851;139852;139853;139854;139855;139856;139857;139858;139859;139860;139861;139862;139863 139858 13 NNLHVLPDELGDLPLVK QMGKLHSLRELNIRRNNLHVLPDELGDLPL LHVLPDELGDLPLVKLDFSCNKVTEIPVCY R N N V K L 0 0 2 2 0 0 1 1 1 0 5 1 0 0 2 0 0 0 0 2 0 0 17 0 1885.0309 Q5VUJ6 Q5VUJ6 235 251 LRCH2 Leucine-rich repeat and calponin homology domain-containing protein 2 yes yes 3 0.022575 16.685 By MS/MS By matching 1 1 0.79674 0.76651 0.68913 2 Median NaN NaN NaN 0 0 Median 0.86989 0.77025 NaN 1 0 Median 0.72975 0.76278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2443100 1198100 1245000 0 0 0 1915800 846790 1069000 527230 351320 175910 0 0 0 0 0 0 0 0 0 26108 3114 27504 139019;139020 139864 139864 1 NNLNPTWK GDGKWHLVYRSEVIKNNLNPTWKRFSVPVQ YRSEVIKNNLNPTWKRFSVPVQHFCGGNPS K N N W K R 0 0 3 0 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 8 0 985.49813 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX45;Q5JX61;Q5JX52 Q99829 183 190 CPNE1 Copine-1 yes no 2 0.024048 72.789 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26109 559 27505 139021 139865 139865 1 NNLNPVWRPFK SDGNWLMVHRTEVVKNNLNPVWRPFKISLN EVVKNNLNPVWRPFKISLNSLCYGDMDKTI K N N F K I 0 1 3 0 0 0 0 0 0 0 1 1 0 1 2 0 0 1 0 1 0 0 11 1 1383.7412 O75131;A0A087WYQ3;H0YB26 O75131 185 195 CPNE3 Copine-3 yes no 2;3 0.00093565 105.14 By MS/MS By MS/MS By matching 3 1 1 0.73956 0.74238 17.589 5 Median 0.73956 0.74238 11.636 3 0 Plateau NaN NaN NaN 0 0 Median 0.74251 0.82851 NaN 1 0 Median 0.96834 0.90868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17190000 10165000 7024900 13714000 8270200 5443500 0 0 0 3274900 1799600 1475300 201120 95004 106120 0 0 0 0 0 0 26110 1645 27506 139022;139023;139024;139025;139026 139866;139867;139868;139869 139866 4 NNLPGHLLR DGLMDEFSKWLSKSRNNLPGHLLRFMTHLI WLSKSRNNLPGHLLRFMTHLILFFRTLGLQ R N N L R F 0 1 2 0 0 0 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1032.5829 P57740 P57740 540 548 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.015919 43.124 By matching By MS/MS 1 1 0.76309 0.73038 5.321 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65617 0.70341 NaN 1 0 Median 0.88743 0.75839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2357800 1500500 857300 0 0 0 0 0 0 1578700 1018400 560340 779150 482180 296960 0 0 0 0 0 0 26111 2518 27507 139027;139028 139870 139870 1 NNLRDWLR SKRYLKYLTKKYLKKNNLRDWLRVVANSKE TKKYLKKNNLRDWLRVVANSKESYELRYFQ K N N L R V 0 2 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 1 1085.573 K7EMH1;K7ERI7;P35268;K7ELC4;C9JYQ9;H0Y8C2;Q6P5R6 K7EMH1 61 68 RPL22;RPL22L1 60S ribosomal protein L22;60S ribosomal protein L22-like 1 yes no 2 0.0022615 150.17 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2398 1.2942 18.481 5 Median 1.2347 1.2942 NaN 1 0 Median 1.559 1.3769 27.423 2 1 Median 1.3569 1.4735 NaN 1 0 Median 1.1905 1.066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 224280000 94743000 129540000 130860000 58652000 72206000 50346000 17689000 32656000 42669000 18206000 24463000 411870 195340 216540 0 0 0 0 0 0 26112 1382 27508 139029;139030;139031;139032;139033 139871;139872;139873;139874;139875;139876;139877 139877 7 NNLSYDCIGR INSLCMTVVQNLMERNNLSYDCIGRLEVGT NLMERNNLSYDCIGRLEVGTETIIDKSKSV R N N G R L 0 1 2 1 1 0 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1210.5401 Q01581;D6RIW1 Q01581 80 89 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes no 2 0.065284 57.598 By MS/MS 1 0.87889 0.74314 NaN 1 Median NaN NaN NaN 0 0 Median 0.87889 0.74314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6101800 3155000 2946800 0 0 0 6101800 3155000 2946800 0 0 0 0 0 0 0 0 0 0 0 0 26113 2687 27509 139034 139878 139878 0 NNLVIDTPR WAKKAELDIDALNGRNNLVIDTPRVRKQTR DALNGRNNLVIDTPRVRKQTRLYSAVKEDE R N N P R V 0 1 2 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 9 0 1040.5615 Q9HCK8;A0A2R8Y840;H0YJG4;Q9P2D1 Q9P2D1 1549 1557 CHD8;CHD7 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 7 no no 2 0.019277 64.42 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26114 4220;4030 27510 139035 139879 139879 1 NNMFEISDR YEQTKNAQFIIISLRNNMFEISDRLIGIYK IIISLRNNMFEISDRLIGIYKTYNITKSVA R N N D R L 0 1 2 1 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1124.4921 Q9NTJ3;E9PD53 Q9NTJ3 1253 1261 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0028118 69.423 By matching By MS/MS By MS/MS 1 1 1 1.1255 0.91515 9.2981 3 Plateau 1.1255 1.0694 NaN 1 0 Median 1.076 0.90592 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.04 0.91515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8804000 4188500 4615500 5570300 2637500 2932800 2020000 926980 1093000 0 0 0 1213700 624080 589670 0 0 0 0 0 0 26115 4108 27511 139036;139037;139038 139880;139881;139882;139883 139881 4 NNNQQLAQLQK AVKFIVRKFPAVETRNNNQQLAQLQKEKSE VETRNNNQQLAQLQKEKSEILKNLALYYFT R N N Q K E 1 0 3 0 0 4 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1297.6739 Q9Y2A7 Q9Y2A7 71 81 NCKAP1 Nck-associated protein 1 yes yes 2 0.025016 51.346 By MS/MS 1 0.98163 0.84505 NaN 1 Median NaN NaN NaN 0 0 Median 0.98163 0.84505 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3922000 1777700 2144300 0 0 0 3922000 1777700 2144300 0 0 0 0 0 0 0 0 0 0 0 0 26116 4383 27512 139039 139884 139884 1 NNNTDLMILK SGEMAIELHLQFLIRNNNTDLMILKNTKDA QFLIRNNNTDLMILKNTKDAVRNSVCHTAT R N N L K N 0 0 3 1 0 0 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1174.6016 A0A087WW66;Q99460 A0A087WW66 345 354 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0046436 52.482 By MS/MS By matching By matching By matching 1 1 1 2 5.1365 5.8772 113.32 5 Median 1.1477 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median 7.9652 9.3049 NaN 1 0 Median 2.5726 2.217 NaN 1 0 Median 8.9362 10.63 83.808 2 0 Median NaN NaN NaN 0 0 Median 37344000 7290500 30054000 8093000 3829200 4263800 0 0 0 3647500 430880 3216700 4211500 811700 3399800 21392000 2218700 19174000 0 0 0 26117 54 27513 139040;139041;139042;139043;139044 139885 139885 1 NNPATPSTAMGSSVPYSTAK TLKNVPQVVNVQELKNNPATPSTAMGSSVP PSTAMGSSVPYSTAKTPHPVLTPVAANQAK K N N A K T 3 0 2 0 0 0 0 1 0 0 0 1 1 0 3 4 3 0 1 1 0 0 20 0 1979.9259 A0A494C1F2;P35658;A0A0A0MSW3;A0A494C104 A0A494C1F2 1118 1137 NUP214 Nuclear pore complex protein Nup214 yes no 2 1.1973E-18 112.42 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.72149 0.69533 10.466 4 Median NaN NaN NaN 0 0 Median 0.73752 0.63947 NaN 1 0 Median 0.70334 0.77765 NaN 1 0 Median 0.7058 0.64044 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87633 0.75493 NaN 1 0 Median 12515000 6715300 5799800 0 0 0 706250 394160 312100 9690000 5201000 4489000 1628000 863420 764570 0 0 0 490840 256710 234130 26118 467 27514 139045;139046;139047;139048 139886;139887;139888;139889 139886 4 NNPFQFR EWMSDKLMRCFEDKRNNPFQFRHLSLCHGL MRCFEDKRNNPFQFRHLSLCHGLSDLARVP R N N F R H 0 1 2 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 7 0 921.4457 Q9P2I0 Q9P2I0 300 306 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.0087724 85.306 By matching By MS/MS By matching 1 1 1 0.96076 0.90444 17.188 3 Median NaN NaN NaN 0 0 Median 1.2784 1.151 NaN 1 0 Median 0.84884 0.90444 NaN 1 0 Median 0.96076 0.82518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7432700 3970100 3462600 0 0 0 276550 103430 173110 6221700 3401200 2820500 934410 465480 468940 0 0 0 0 0 0 26119 4223 27515 139049;139050;139051 139890;139891 139891 2 NNPPTLVGDFTK NSDMHPMRVLFLIPKNNPPTLVGDFTKSFK IPKNNPPTLVGDFTKSFKEFIDACLNKDPS K N N T K S 0 0 2 1 0 0 0 1 0 0 1 1 0 1 2 0 2 0 0 1 0 0 12 0 1301.6616 Q8NBY1;B4E0Y9;Q9P289 Q8NBY1 234 245 STK26 Serine/threonine-protein kinase 26 yes no 2 0.0067898 64.82 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26120 612 27516 139052 139892 139892 1 NNPSKPLHVIK LLSVSLSGYINYLDRNNPSKPLHVIKGHSK YLDRNNPSKPLHVIKGHSKSIQCLTVHKNG R N N I K G 0 0 2 0 0 0 0 0 1 1 1 2 0 0 2 1 0 0 0 1 0 0 11 1 1245.7194 O75083 O75083 307 317 WDR1 WD repeat-containing protein 1 yes yes 3 0.00072209 54.486 By MS/MS By MS/MS By matching By matching 4 5 1 1 0.8557 0.83117 5.814 11 Median 0.89297 0.81066 6.4193 4 0 Linear 0.86181 0.83117 6.5549 5 0 Median 0.81471 0.86102 NaN 1 0 Median 0.86096 0.79497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22857000 12158000 10699000 4903000 2458500 2444600 17123000 9260800 7862600 543890 280970 262920 286570 157470 129100 0 0 0 0 0 0 26121 1643 27517 139053;139054;139055;139056;139057;139058;139059;139060;139061;139062;139063 139893;139894;139895;139896 139895 4 NNQFNQDELALMEK KNLIKTVIKLAILYRNNQFNQDELALMEKF RNNQFNQDELALMEKFKKKVHQLAMTVVSF R N N E K F 1 0 3 1 0 2 2 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 14 0 1692.7777 D6RCM8;O95379 D6RCM8 90 103 TNFAIP8 Tumor necrosis factor alpha-induced protein 8 yes no 2 2.9899E-06 96.015 By MS/MS By matching 1 1 1.7719 1.6121 45.283 2 Median 1.2373 1.1704 NaN 1 0 Median 2.5375 2.2206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3685500 1134900 2550600 3154500 1009400 2145100 531030 125480 405550 0 0 0 0 0 0 0 0 0 0 0 0 26122 820 27518 139064;139065 139897 139897 1 NNQFQALLQYADPVNAHYAK FSKFGTVLKIITFTKNNQFQALLQYADPVN ALLQYADPVNAHYAKMALDGQNIYNACCTL K N N A K M 4 0 3 1 0 3 0 0 1 0 2 1 0 1 1 0 0 0 2 1 0 0 20 0 2304.1287 O95758 O95758 217 236 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 3 0.05718 8.1875 By MS/MS By matching 1 2 0.96202 0.98647 11.062 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96202 0.98852 NaN 1 0 Median 0.93709 0.81621 0.38985 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2225900 1174100 1051800 0 0 0 0 0 0 1839300 980240 859090 386560 193830 192730 0 0 0 0 0 0 26123 1791 27519 139066;139067;139068 139898 139898 1 NNQFQALLQYADPVSAQHAK FSKFGTVLKIITFTKNNQFQALLQYADPVS ALLQYADPVSAQHAKLSLDGQNIYNACCTL K N N A K L 4 0 2 1 0 4 0 0 1 0 2 1 0 1 1 1 0 0 1 1 0 0 20 0 2242.1131 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7EK45;A0A087WU68 A0A0U1RRM4 250 269 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2;3 1.0229E-31 135.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 6 5 6 0.93705 0.89781 18.051 27 Median 1.0508 1.0263 28.488 6 0 Median 1.2801 1.0843 18.107 4 0 Median 0.80994 0.77667 15.126 6 1 Median 0.986 0.84341 4.196 5 0 Median 0.88114 0.89213 4.8314 6 0 Median NaN NaN NaN 0 0 Median 483070000 240210000 242860000 27006000 13280000 13726000 12961000 6053100 6907600 379680000 188950000 190730000 10953000 5369700 5583500 52469000 26554000 25915000 0 0 0 26124 312 27520 139069;139070;139071;139072;139073;139074;139075;139076;139077;139078;139079;139080;139081;139082;139083;139084;139085;139086;139087;139088;139089;139090;139091;139092;139093;139094;139095 139899;139900;139901;139902;139903;139904;139905;139906;139907;139908;139909;139910;139911;139912;139913;139914;139915;139916;139917;139918;139919;139920;139921;139922;139923;139924;139925;139926;139927;139928;139929;139930;139931;139932;139933;139934;139935;139936;139937;139938 139912 40 NNQGQLIAEPFYHLPSK SNPFYQLYDTVRSCRNNQGQLIAEPFYHLP QGQLIAEPFYHLPSKKKYPDYYQQIKMPIS R N N S K K 1 0 2 0 0 2 1 1 1 1 2 1 0 1 2 1 0 0 1 0 0 0 17 0 1954.9901 Q86U86;E7EVG2;H0Y5B5 Q86U86 398 414 PBRM1 Protein polybromo-1 yes no 2;3 2.9829E-14 111.79 By matching By MS/MS By MS/MS 1 2 1 0.75533 0.75612 34.947 4 Median NaN NaN NaN 0 0 Median 1.184 1.1581 NaN 1 0 Median 0.5276 0.58132 15.122 2 1 Median 0.97007 0.88374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43184000 27908000 15276000 0 0 0 225380 87316 138070 41820000 27226000 14593000 1139200 594490 544690 0 0 0 0 0 0 26125 3273 27521 139096;139097;139098;139099 139939;139940;139941 139940 3 NNQGQLIAEPFYHLPSKK SNPFYQLYDTVRSCRNNQGQLIAEPFYHLP GQLIAEPFYHLPSKKKYPDYYQQIKMPISL R N N K K K 1 0 2 0 0 2 1 1 1 1 2 2 0 1 2 1 0 0 1 0 0 0 18 1 2083.0851 Q86U86;E7EVG2;H0Y5B5 Q86U86 398 415 PBRM1 Protein polybromo-1 yes no 3;4 2.0775E-05 48.288 By MS/MS By matching 2 1 0.61002 0.70575 24.738 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56775 0.6572 10.079 2 0 Median 1.0639 0.99058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23510000 14289000 9221600 0 0 0 0 0 0 23011000 14076000 8935000 499640 213100 286540 0 0 0 0 0 0 26126 3273 27522 139100;139101;139102 139942;139943 139942 2 NNQGTVNWSVDDIVK SSFPDDATSPLQENRNNQGTVNWSVDDIVK NNQGTVNWSVDDIVKGINSSNVENQLQATQ R N N V K G 0 0 3 2 0 1 0 1 0 1 0 1 0 0 0 1 1 1 0 3 0 0 15 0 1687.8166 P52292;J3QLL0;J3KS65 P52292 69 83 KPNA2 Importin subunit alpha-1 yes no 2 4.5279E-06 87.363 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 1 1.5248 1.3948 22.751 4 Median NaN NaN NaN 0 0 Median 1.1312 0.96238 NaN 1 0 Median 1.4249 1.3766 NaN 1 0 Median 1.6316 1.4133 NaN 1 0 Median 1.7304 1.6473 NaN 1 0 Median NaN NaN NaN 0 0 Median 45486000 17837000 27649000 0 0 0 5377200 2506700 2870500 33567000 13290000 20276000 878690 380000 498700 5663400 1659900 4003500 0 0 0 26127 2448 27523 139103;139104;139105;139106;139107 139944;139945;139946;139947;139948 139947 5 NNQVLGIGSGSTIVHAVQR AKKLAGRAAVENHVRNNQVLGIGSGSTIVH LGIGSGSTIVHAVQRIAERVKQENLNLVCI R N N Q R I 1 1 2 0 0 2 0 3 1 2 1 0 0 0 0 2 1 0 0 3 0 0 19 0 1949.0443 P49247 P49247 96 114 RPIA Ribose-5-phosphate isomerase yes yes 3 3.5617E-07 62.765 By MS/MS 1 1.5996 1.519 NaN 1 Median 1.5996 1.519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17765000 5979700 11786000 17765000 5979700 11786000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26128 2374 27524 139108 139949 139949 1 NNRPSEGPLQTR NLIQQCTAFLLDALKNNRPSEGPLQTRLLE ALKNNRPSEGPLQTRLLEMNLMHAPQVADA K N N T R L 0 2 2 0 0 1 1 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 12 1 1367.6906 A0A087WVQ6;Q00610 A0A087WVQ6 576 587 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 0.00012331 136.99 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 2 1 0.84146 0.89259 16.783 14 Median 0.84146 0.89986 9.5433 4 0 Median 0.93724 0.9152 12.129 5 0 Median 0.68318 0.86302 9.4694 2 0 Median 0.94086 0.85201 7.0608 2 0 Median NaN NaN NaN 0 0 Median 0.58213 0.51093 NaN 1 0 Median 25263000 12944000 12318000 4395100 2338300 2056800 17706000 8762600 8943900 1497700 906600 591080 1071000 511270 559730 0 0 0 592700 425760 166940 26129 44 27525 139109;139110;139111;139112;139113;139114;139115;139116;139117;139118;139119;139120;139121;139122 139950;139951;139952;139953;139954;139955;139956;139957;139958;139959 139957 10 NNRQPYAVSELAGHQTSAESWGTGR IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ LAGHQTSAESWGTGRAVARIPRVRGGGTHR K N N G R A 3 2 2 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 25 1 2715.275 P36578;H3BTP7;H3BU31 P36578 47 71 RPL4 60S ribosomal protein L4 yes no 3;4 5.6888E-31 120.54 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1.0059 1.0682 10.492 7 Median 0.96618 0.9757 5.6914 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3077 1.2198 NaN 1 1 Median 0.98873 1.0803 1.5904 2 0 Median 1.1509 1.0175 16.043 2 0 Median 146890000 69281000 77610000 71054000 35042000 36012000 0 0 0 0 0 0 6980600 2920200 4060500 66679000 30285000 36394000 2176700 1033100 1143600 26130 2260 27526 139123;139124;139125;139126;139127;139128;139129 139960;139961;139962;139963;139964;139965;139966;139967;139968 139961 9 NNSDKDQSLGNWR SIEEIDLEGKFVQLKNNSDKDQSLGNWRIK LKNNSDKDQSLGNWRIKRQVLEGEEIAYKF K N N W R I 0 1 3 2 0 1 0 1 0 0 1 1 0 0 0 2 0 1 0 0 0 0 13 1 1532.6968 Q03252 Q03252 490 502 LMNB2 Lamin-B2 yes yes 2;3 6.2264E-07 117.98 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 1.162 1.0778 28.467 10 Median 1.1798 1.1151 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92574 0.98386 8.0977 2 1 Median 1.9298 1.7386 25.942 2 0 Median 0.89313 0.91093 26.177 3 0 Median 1.2238 1.0888 7.5662 2 1 Median 58905000 29708000 29197000 2679100 1340700 1338400 0 0 0 20121000 11732000 8388400 3934900 1306700 2628200 27851000 13548000 14303000 4319900 1780600 2539300 26131 2709 27527 139130;139131;139132;139133;139134;139135;139136;139137;139138;139139 139969;139970;139971;139972;139973;139974;139975;139976;139977;139978 139973 10 NNSELLNNLGNFINR EGQDSAFSWTDLLLKNNSELLNNLGNFINR NNSELLNNLGNFINRAGMFVSKFFGGYVPE K N N N R A 0 1 6 0 0 0 1 1 0 1 3 0 0 1 0 1 0 0 0 0 0 0 15 0 1730.87 P56192 P56192 642 656 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 4.5621E-86 255.7 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 3 2 1.0203 0.92015 53.751 10 Median 1.1234 1.0814 NaN 1 0 Median 1.0573 0.91438 3.507 3 0 Median 0.86597 0.92597 NaN 1 0 Median 1.0646 0.92658 8.6461 3 0 Median 0.38259 0.38869 116.67 2 0 Median NaN NaN NaN 0 0 Median 55712000 27584000 28128000 17886000 8640700 9245300 32059000 15383000 16676000 1885200 894170 991020 1079800 528710 551080 2802200 2138100 664080 0 0 0 26132 2508 27528 139140;139141;139142;139143;139144;139145;139146;139147;139148;139149 139979;139980;139981;139982;139983;139984 139984 6 NNSFVNEIISR ITIKLKQLKAEVIAKNNSFVNEIISRIKVT VIAKNNSFVNEIISRIKVTT__________ K N N S R I 0 1 3 0 0 0 1 0 0 2 0 0 0 1 0 2 0 0 0 1 0 0 11 0 1291.6521 P43246 P43246 919 929 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.00020825 100.48 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.0885 1.0438 45.675 6 Median 1.0946 1.0534 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97786 1.0343 NaN 1 0 Median 1.3743 1.1664 64.353 3 0 Plateau NaN NaN NaN 0 0 Median 1.1925 1.0545 NaN 1 0 Median 56033000 23487000 32547000 21325000 8083300 13241000 0 0 0 27878000 12717000 15161000 6655600 2619400 4036200 0 0 0 175510 67452 108060 26133 2324 27529 139150;139151;139152;139153;139154;139155 139985;139986;139987;139988 139985 4 NNSGLSFEELYR IWDLLKNAIQEIQRKNNSGLSFEELYRNAY QRKNNSGLSFEELYRNAYTMVLHKHGEKLY K N N Y R N 0 1 2 0 0 0 2 1 0 0 2 0 0 1 0 2 0 0 1 0 0 0 12 0 1427.6681 Q13618;H7C1L6;A0A087X1R9 Q13618 48 59 CUL3 Cullin-3 yes no 2 0.00023098 100.48 By MS/MS 1 1.1154 1.1985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1154 1.1985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3178200 1823100 1355100 0 0 0 0 0 0 3178200 1823100 1355100 0 0 0 0 0 0 0 0 0 26134 2831 27530 139156 139989 139989 1 NNSPMAANQTPTLR KILRAVVKIVEEWVKNNSPMAANQTPTLRE KNNSPMAANQTPTLREKSILLVKMMTYIEK K N N L R E 2 1 3 0 0 1 0 0 0 0 1 0 1 0 2 1 2 0 0 0 0 0 14 0 1513.7307 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2359 2372 TRRAP Transformation/transcription domain-associated protein yes no 2 1.9056E-05 100.55 By MS/MS 1 0.66474 0.71754 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66474 0.71754 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4535000 2673500 1861500 0 0 0 0 0 0 4535000 2673500 1861500 0 0 0 0 0 0 0 0 0 26135 991 27531 139157 139990 139990 1 NNTALQSVSLR CTKVKQKQQKAALLKNNTALQSVSLRSKTT ALLKNNTALQSVSLRSKTTIRERPSSAIYP K N N L R S 1 1 2 0 0 1 0 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 11 0 1201.6415 V9GYM8;Q92974;V9GYF5;V9GYG5;V9GZ14;V9GZ58 V9GYM8 146 156 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 2 0.00022785 73.985 By MS/MS 1 1.3064 1.0292 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3064 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1823700 777940 1045700 0 0 0 0 0 0 0 0 0 1823700 777940 1045700 0 0 0 0 0 0 26136 4562 27532 139158 139991 139991 1 NNTQVLINCR EFNTGPLSVLTQSVKNNTQVLINCRNNKKL TQSVKNNTQVLINCRNNKKLLGRVKAFDRH K N N C R N 0 1 3 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1230.6139 P62316;K7ERG4 P62316 38 47 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 7.9721E-18 193.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.1146 1.0133 6.6042 6 Median NaN NaN NaN 0 0 Median 1.3396 1.1268 3.0178 2 0 Median 1.0114 1.0211 NaN 1 0 Median 1.2284 0.96635 NaN 1 0 Median 0.96659 1.0051 0.071575 2 0 Median NaN NaN NaN 0 0 Median 67568000 31942000 35625000 0 0 0 19003000 8120900 10882000 43519000 21601000 21918000 3241500 1428200 1813300 1804000 792030 1012000 0 0 0 26137 2586 27533 139159;139160;139161;139162;139163;139164 139992;139993;139994;139995;139996;139997;139998;139999 139993 8 NNTVGLIQLNRPK SGANFEYIIAEKRGKNNTVGLIQLNRPKAL GKNNTVGLIQLNRPKALNALCDGLIDELNQ K N N P K A 0 1 3 0 0 1 0 1 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1465.8365 P30084 P30084 44 56 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 1.7404E-15 150.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 2 2 2 1 1.1662 1.0952 30.617 12 Median 0.91205 0.94498 17.192 4 1 Median 1.5498 1.4294 NaN 1 1 Median 0.85945 0.89507 0.13689 2 1 Median 1.3832 1.2244 6.9027 2 1 Median 1.7013 1.7961 8.592 2 0 Median 1.7607 1.581 NaN 1 0 Median 310010000 154630000 155370000 271900000 137720000 134180000 13286000 4629300 8656800 15938000 8879800 7058600 3615700 1435100 2180600 4646500 1707900 2938600 623610 264840 358780 26138 2186 27534 139165;139166;139167;139168;139169;139170;139171;139172;139173;139174;139175;139176 140000;140001;140002;140003;140004;140005;140006;140007;140008;140009 140007 10 NNVAFMSYFLQGK NMVNKLAEGAERDGKNNVAFMSYFLQGKVD GKNNVAFMSYFLQGKVDACLELLIRTGRLP K N N G K V 1 0 2 0 0 1 0 1 0 0 1 1 1 2 0 1 0 0 1 1 0 0 13 0 1517.7337 P35606 P35606 725 737 COPB2 Coatomer subunit beta yes yes 2 0.00066087 68.224 By MS/MS By matching 2 1 1.1948 1.0871 4.3004 3 Median 1.1508 1.1147 3.5445 2 0 Median 1.1948 1.0492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9807400 4825300 4982200 8390300 4122200 4268200 1417100 703080 714030 0 0 0 0 0 0 0 0 0 0 0 0 26139 2246 27535 139177;139178;139179 140010;140011;140012;140013 140013 4 NNVNVASLTQSEIR EVQLKDLILADYGKKNNVNVASLTQSEIRD KNNVNVASLTQSEIRDIILGMEISAPSQQR K N N I R D 1 1 3 0 0 1 1 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1543.7954 Q6P2Q9 Q6P2Q9 1995 2008 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 6.2574E-11 171.62 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2647 1.1427 5.7487 6 Median NaN NaN NaN 0 0 Median 1.2952 1.1035 5.7635 2 0 Median NaN NaN NaN 0 0 Median 1.3082 1.1452 1.15 2 0 Median 1.1349 1.1767 NaN 1 0 Median 1.2139 1.0166 NaN 1 0 Median 24134000 10665000 13468000 0 0 0 9420300 4322000 5098300 0 0 0 6646300 2833800 3812500 7081500 3067800 4013700 985460 441600 543850 26140 3157 27536 139180;139181;139182;139183;139184;139185 140014;140015;140016;140017;140018 140017 5 NNVSSVSTTGTATDLESSAK LRIMSPMRTGNTYSRNNVSSVSTTGTATDL VSTTGTATDLESSAKVVDHVLGPLNSSTSL R N N A K V 2 0 2 1 0 0 1 1 0 0 1 1 0 0 0 5 4 0 0 2 0 0 20 0 1967.9284 Q03164 Q03164 2222 2241 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 5.4556E-14 107.14 By MS/MS By matching 2 1 1.0478 1.1586 10.704 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0439 1.1494 1.1348 2 0 Median 1.5188 1.3828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8267100 3753500 4513600 0 0 0 0 0 0 7283100 3343600 3939500 984090 409920 574170 0 0 0 0 0 0 26141 2708 27537 139186;139187;139188 140019;140020;140021 140019 3 NNVVINYK RLIVDHNIADYMTAKNNVVINYKDMNHTNS ADYMTAKNNVVINYKDMNHTNSYGIIRGLQ K N N Y K D 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 0 962.51853 Q6P2Q9;I3L0J9 Q6P2Q9 1013 1020 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0065188 70.912 By matching By MS/MS 1 1 0.99758 1.004 10.04 2 Median NaN NaN NaN 0 0 Median 0.96669 0.93517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0294 1.0779 NaN 1 0 Median NaN NaN NaN 0 0 Median 9323700 4694600 4629100 0 0 0 2938300 1477700 1460600 0 0 0 0 0 0 6385400 3216900 3168500 0 0 0 26142 3157 27538 139189;139190 140022 140022 1 NNVVITVTQR VTRADGNQLTLEERRNNVVITVTQRNYTEY LEERRNNVVITVTQRNYTEYWSGSNSGNQK R N N Q R N 0 1 2 0 0 1 0 0 0 1 0 0 0 0 0 0 2 0 0 3 0 0 10 0 1142.6408 Q6YHK3 Q6YHK3 387 396 CD109 CD109 antigen yes yes 2 0.00048844 74.92 By MS/MS By MS/MS 1 1 1.2296 1.1574 23.494 2 Median NaN NaN NaN 0 0 Median 1.1613 0.98029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3019 1.3666 NaN 1 0 Median NaN NaN NaN 0 0 Median 6289800 2549400 3740400 0 0 0 2357100 1020900 1336300 0 0 0 0 0 0 3932700 1528600 2404200 0 0 0 26143 3193 27539 139191;139192 140023;140024 140024 1 NNWEVSALSR LDGYLKTSALSDETKNNWEVSALSRAAQKG SDETKNNWEVSALSRAAQKGFNKVVLKHLK K N N S R A 1 1 2 0 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 1 0 0 10 0 1174.5731 P78527 P78527 811 820 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.8202E-05 148.14 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 1.4068 1.174 19.657 8 Median 1.0065 0.97407 NaN 1 0 Median 1.3907 1.1148 24.396 3 0 Median 0.85679 0.88993 NaN 1 0 Median 1.456 1.2737 2.763 2 0 Median NaN NaN NaN 0 0 Median 1.5098 1.2364 NaN 1 0 Median 174320000 82545000 91773000 42438000 20088000 22350000 33488000 13621000 19867000 84125000 43228000 40898000 13482000 5324200 8157500 0 0 0 785760 283840 501930 26144 2647 27540 139193;139194;139195;139196;139197;139198;139199;139200 140025;140026;140027;140028;140029;140030;140031;140032;140033;140034;140035 140028 11 NNYDEEIISLK AKRRWEYENELSKVRNNYDEEIISLKNQFE SKVRNNYDEEIISLKNQFETEINITKTTIH R N N L K N 0 0 2 1 0 0 2 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 11 0 1336.6511 P15924 P15924 1353 1363 DSP Desmoplakin yes yes 2 0.0055202 66.435 By MS/MS 1 0.61171 0.68182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61171 0.68182 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3054400 2044900 1009500 0 0 0 0 0 0 3054400 2044900 1009500 0 0 0 0 0 0 0 0 0 26145 2021 27541 139201 140036 140036 1 NNYENYIDIVK RTPQKMVYYGKPSCKNNYENYIDIVKYVFS PSCKNNYENYIDIVKYVFSAYKRESPLIVN K N N V K Y 0 0 3 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 11 0 1383.667 Q5SY16 Q5SY16 381 391 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.0081718 40.994 By MS/MS 1 0.97751 1.0134 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97751 1.0134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6695300 3975400 2719900 0 0 0 0 0 0 6695300 3975400 2719900 0 0 0 0 0 0 0 0 0 26146 3077 27542 139202 140037 140037 1 NPADSISHVAYR PVRAELMQALWRTLRNPADSISHVAYRVLG TLRNPADSISHVAYRVLGKFGGSNRKMLKE R N P Y R V 2 1 1 1 0 0 0 0 1 1 0 0 0 0 1 2 0 0 1 1 0 0 12 0 1328.6473 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 881 892 TRRAP Transformation/transcription domain-associated protein yes no 2;3 0.00016495 86.898 By matching By MS/MS By MS/MS 1 1 2 0.84729 0.76811 8.012 4 Median NaN NaN NaN 0 0 Median 0.79645 0.67711 NaN 1 0 Median 0.70079 0.75153 NaN 1 0 Median 0.9184 0.79991 2.6514 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14922000 7858300 7064000 0 0 0 3190000 1641500 1548500 5471800 2990600 2481200 6260600 3226300 3034300 0 0 0 0 0 0 26147 991 27543 139203;139204;139205;139206 140038;140039;140040 140040 3 NPAGSVVMER QGSNYLIVLGSQRRRNPAGSVVMERIRMDI SQRRRNPAGSVVMERIRMDIRKVDAVFVGT R N P E R I 1 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 10 0 1058.5179 O00764;F2Z2Y4 O00764 209 218 PDXK Pyridoxal kinase yes no 2 0.00034968 84.213 By MS/MS By MS/MS 1 1 0.83495 0.74119 3.2102 2 Median 0.80211 0.75821 NaN 1 0 Median 0.86914 0.72456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10090000 5243300 4846800 5152700 2626100 2526600 4937500 2617200 2320300 0 0 0 0 0 0 0 0 0 0 0 0 26148 1478 27544 139207;139208 140041;140042;140043 140043 3 NPALYASNVR IEFLPVYSPSEEEKRNPALYASNVRRVMAE EEEKRNPALYASNVRRVMAEALGVSVTDYT R N P V R R 2 1 2 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 10 0 1103.5724 Q8NF37;A0A0G2JQ62 Q8NF37 286 295 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes no 2 0.004358 68.016 By MS/MS 1 1.1298 0.97201 NaN 1 Median NaN NaN NaN 0 0 Median 1.1298 0.97201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2339100 1196400 1142700 0 0 0 2339100 1196400 1142700 0 0 0 0 0 0 0 0 0 0 0 0 26149 3433 27545 139209 140044 140044 1 NPAMMQEMMR LNNPDIMRQTLELARNPAMMQEMMRNQDRA LELARNPAMMQEMMRNQDRALSNLESIPGG R N P M R N 1 1 1 0 0 1 1 0 0 0 0 0 4 0 1 0 0 0 0 0 0 0 10 0 1237.5076 Q9NRR5;Q9UHD9;Q9UMX0;H0YDS0 Q9UMX0 244 253 UBQLN4;UBQLN2;UBQLN1 Ubiquilin-4;Ubiquilin-2;Ubiquilin-1 no no 2 3.7893E-05 140.5 By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1.0093 0.93375 13.476 8 Median 0.95654 0.89923 5.8993 3 0 Median 1.0587 0.91616 20.867 3 0 Median 0.96453 1.0154 NaN 1 0 Median 1.1911 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61119000 29369000 31750000 47330000 22864000 24466000 9103100 4261000 4842200 4166100 2019800 2146300 519700 224320 295380 0 0 0 0 0 0 26150 4335;4277;4087 27546;27547 139210;139211;139212;139213;139214;139215;139216;139217 140045;140046;140047;140048;140049;140050 140047 1872;1873 6 NPAPPIDAVEQILPTLVR LRNLTWTLSNLCRNKNPAPPIDAVEQILPT PPIDAVEQILPTLVRLLHHDDPEVLADTCW K N P V R L 2 1 1 1 0 1 1 0 0 2 2 0 0 0 4 0 1 0 0 2 0 0 18 0 1942.0888 P52292 P52292 241 258 KPNA2 Importin subunit alpha-1 yes yes 2 4.9771E-06 62.891 By matching By matching By matching By MS/MS By matching 1 2 1 1 1 0.64238 0.56409 23.31 6 Median 0.8227 0.80129 NaN 1 0 Median 0.53512 0.48796 23.446 2 0 Median 0.69654 0.71025 NaN 1 0 Median 0.60678 0.5266 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62478 0.55248 NaN 1 0 Median 9094200 5106700 3987500 408830 208320 200510 1149800 672840 476960 6813000 3794000 3019000 637670 378760 258910 0 0 0 84830 52743 32087 26151 2448 27548 139218;139219;139220;139221;139222;139223 140051 140051 1 NPASLPLTQAALK DGKKQEGPATQVSKKNPASLPLTQAALKVL KKNPASLPLTQAALKVLAQKASEAQPPVAR K N P L K V 3 0 1 0 0 1 0 0 0 0 3 1 0 0 2 1 1 0 0 0 0 0 13 0 1322.7558 Q13428 Q13428 1066 1078 TCOF1 Treacle protein yes yes 2 6.2839E-09 100.88 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26152 2816 27549 139224 140052 140052 1 NPASPYNLAYK LIRKTRTILEAKQAKNPASPYNLAYKYNFE KQAKNPASPYNLAYKYNFEYSVVFNMVLWI K N P Y K Y 2 0 2 0 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 0 0 11 0 1236.6139 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1B0GTU8;B7Z413;B7Z1I9;A0A1B0GVC7;A0A1B0GWD6;A0A1B0GVI9 O75787 288 298 ATP6AP2 Renin receptor yes no 2 0.00013768 117.89 By MS/MS By MS/MS By matching 2 2 1 0.88688 0.80254 16.84 5 Median 0.88504 0.80959 1.2361 2 0 Median 0.83079 0.68427 8.8931 2 0 Median 0.99885 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93846000 47909000 45937000 38346000 20061000 18285000 52112000 26360000 25752000 3388400 1489000 1899500 0 0 0 0 0 0 0 0 0 26153 316 27550 139225;139226;139227;139228;139229 140053;140054;140055;140056;140057;140058;140059;140060 140059 8 NPATTNQTEFER RKGSQITQQSTNQSRNPATTNQTEFERVF_ QSRNPATTNQTEFERVF_____________ R N P E R V 1 1 2 0 0 1 2 0 0 0 0 0 0 1 1 0 3 0 0 0 0 0 12 0 1406.6426 P50750 P50750 359 370 CDK9 Cyclin-dependent kinase 9 yes yes 2 0.00020783 85.377 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.83648 0.76682 20.738 4 Median 0.58489 0.59624 NaN 1 0 Median 0.97882 0.83858 NaN 1 1 Median 0.88313 0.95876 NaN 1 0 Median 0.79231 0.70119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5351600 2785500 2566200 1271500 722780 548700 1260500 551970 708570 2000200 1034800 965420 819420 475940 343490 0 0 0 0 0 0 26154 2422 27551 139230;139231;139232;139233 140061;140062;140063;140064 140062 4 NPAVLSAASFDGR PTNTQWCFDIQWCPRNPAVLSAASFDGRIS PRNPAVLSAASFDGRISVYSIMGGSTDGLR R N P G R I 3 1 1 1 0 0 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1303.6521 D6REX3;O94979;D6RHZ5;H7BXG7 D6REX3 315 327 SEC31A Protein transport protein Sec31A yes no 2 6.6201E-07 104.79 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1.1031 0.98509 9.8469 5 Median 0.98267 0.94582 NaN 1 0 Median 1.1696 0.98509 NaN 1 0 Median 1.1031 1.2109 NaN 1 0 Median 1.1773 1.0054 NaN 1 1 Median 0.99949 0.97295 NaN 1 0 Median NaN NaN NaN 0 0 Median 30095000 13990000 16105000 19546000 8805100 10741000 5740100 2717200 3022900 2946200 1538200 1408000 874770 450660 424110 988550 479360 509190 0 0 0 26155 823 27552 139234;139235;139236;139237;139238 140065;140066 140065 2 NPAVTQLVDR LLLALAEFLCLNYKKNPAVTQLVDRTRIVI LNYKKNPAVTQLVDRTRIVIVPSLNPDGRE K N P D R T 1 1 1 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 10 0 1111.5986 O75976 O75976 1018 1027 CPD Carboxypeptidase D yes yes 2 0.00063911 93.598 By MS/MS By MS/MS 1 1 0.80131 0.71723 30.237 2 Median 0.61704 0.57917 NaN 1 1 Median 1.0406 0.88822 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19576000 11085000 8491500 12311000 7543200 4768300 7264600 3541400 3723200 0 0 0 0 0 0 0 0 0 0 0 0 26156 1714 27553 139239;139240 140067;140068 140067 2 NPDDITNEEYGEFYK IDQEELNKTKPIWTRNPDDITNEEYGEFYK NPDDITNEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 2 2 0 0 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1832.7741 P07900 P07900 300 314 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 2.3928E-11 169.23 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 1 1 1 1 0.96501 0.90937 17.725 8 Median 0.97671 0.90937 6.6687 4 0 Median 0.90932 0.7969 NaN 1 0 Median 0.96904 1.0441 NaN 1 0 Median 0.94798 0.82203 NaN 1 0 Median 1.3392 1.3716 NaN 1 1 Median NaN NaN NaN 0 0 Median 505850000 250160000 255690000 395560000 194020000 201540000 64311000 32980000 31331000 34711000 17757000 16955000 2764000 1333900 1430100 8507200 4073000 4434200 0 0 0 26157 1894 27554 139241;139242;139243;139244;139245;139246;139247;139248 140069;140070;140071;140072;140073;140074;140075;140076;140077;140078;140079;140080;140081;140082 140072 14 NPDDITQEEYGEFYK IDQEELNKTKPIWTRNPDDITQEEYGEFYK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 1 2 0 1 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1846.7897 P08238 P08238 292 306 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 5.911E-32 172.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 4 3 3 1 1.0155 0.967 21.91 18 Median 0.96993 0.92073 10.963 7 2 Median 1.0639 0.93624 9.4818 4 0 Median 0.91695 0.96837 17.437 3 0 Median NaN NaN NaN 0 0 Median 1.3843 1.4155 37.632 3 1 Median 1.095 0.90657 NaN 1 0 Median 577230000 286780000 290440000 435270000 219960000 215310000 89840000 42183000 47657000 36186000 18069000 18117000 0 0 0 14636000 5983300 8652300 1296500 587000 709490 26158 1899 27555 139249;139250;139251;139252;139253;139254;139255;139256;139257;139258;139259;139260;139261;139262;139263;139264;139265;139266 140083;140084;140085;140086;140087;140088;140089;140090;140091;140092;140093;140094;140095;140096;140097;140098;140099;140100;140101;140102;140103;140104 140084 22 NPDELAEALDER TELAATMVELGKDKRNPDELAEALDERLGD DKRNPDELAEALDERLGDFAFPDEFVFDVW R N P E R L 2 1 1 2 0 0 3 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 12 0 1370.6314 O14908;K7EM11 O14908 296 307 GIPC1 PDZ domain-containing protein GIPC1 yes no 2 0.00027636 140.07 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.89702 0.85103 201.42 6 Median 0.9167 0.9338 NaN 1 0 Median 0.84826 0.73528 NaN 1 0 Median 0.83838 0.86533 23.72 2 0 Median 10.627 9.4144 353.04 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95895000 9667100 86228000 1310600 792780 517800 854990 429310 425680 12437000 7213700 5222900 81293000 1231300 80062000 0 0 0 0 0 0 26159 1502 27556 139267;139268;139269;139270;139271;139272 140105;140106;140107;140108;140109 140107 5 NPDILVGENDLTALSYLHEPAVLHNLR EYHLDPKTKELPHLRNPDILVGENDLTALS ALSYLHEPAVLHNLRVRFIDSKLIYTYCGI R N P L R V 2 1 3 2 0 0 2 1 2 1 6 0 0 0 2 1 1 0 1 2 0 0 27 0 3012.5669 A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;H0YM96;H0YMK3;Q9NQX4 A0A087WY00 64 90 MYO5A;MYO5C Unconventional myosin-Va;Unconventional myosin-Vc yes no 4 0.049843 17.076 By MS/MS 1 0.77765 0.65765 NaN 1 Median NaN NaN NaN 0 0 Median 0.77765 0.65765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2628600 1064900 1563800 0 0 0 2628600 1064900 1563800 0 0 0 0 0 0 0 0 0 0 0 0 26160 74 27557 139273 140110 140110 1 NPDIPNPALAQR EILYYRKTIGYKVPRNPDIPNPALAQREEQ VPRNPDIPNPALAQREEQKKIDGAEPLTPE R N P Q R E 2 1 2 1 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 12 0 1304.6837 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 806 817 SMARCA1 Probable global transcription activator SNF2L1 no no 2 4.1969E-06 113.71 By MS/MS By MS/MS 2 1 0.55052 0.60547 8.5541 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56985 0.62675 4.8853 2 2 Median NaN NaN NaN 0 0 Median 0.52111 0.54731 NaN 1 1 Median NaN NaN NaN 0 0 Median 16936000 10812000 6124100 0 0 0 0 0 0 13117000 8275500 4841200 0 0 0 3819600 2536700 1282800 0 0 0 26161 167;643 27558 139274;139275;139276 140111;140112;140113 140111 3 NPDNEFANMWIER VQRFEYSRPIRKGEKNPDNEFANMWIERTI EKNPDNEFANMWIERTIYTTAYKLPGILRW K N P E R T 1 1 3 1 0 0 2 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 13 0 1634.7147 A0A096LNH6;Q14185 A0A096LNH6 1470 1482 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.0009775 61.353 By MS/MS By matching 1 1 0.84008 0.82805 8.0525 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70486 0.78222 NaN 1 0 Median 1.0012 0.87657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2105900 1149200 956650 0 0 0 0 0 0 1797600 1013800 783810 308300 135460 172840 0 0 0 0 0 0 26162 140 27559 139277;139278 140114 140114 1 NPDQVYLVDYGLAYR VHGDIKASNLLLNYKNPDQVYLVDYGLAYR NPDQVYLVDYGLAYRYCPEGVHKEYKEDPK K N P Y R Y 1 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 3 2 0 0 15 0 1784.8733 Q99986;H0YJ50 Q99986 189 203 VRK1 Serine/threonine-protein kinase VRK1 yes no 2;3 5.5054E-10 161.94 By matching By MS/MS By MS/MS By MS/MS 1 4 2 1 0.82139 0.8159 12.815 8 Median 0.69773 0.6715 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81831 0.8297 12.691 4 1 Median 1.0152 0.8828 11.709 2 0 Median 0.81359 0.81915 NaN 1 0 Median NaN NaN NaN 0 0 Median 121390000 66387000 55006000 4017300 1969400 2047900 0 0 0 108490000 59817000 48677000 5680400 2784800 2895600 3200600 1815000 1385600 0 0 0 26163 3775 27560 139279;139280;139281;139282;139283;139284;139285;139286 140115;140116;140117;140118;140119;140120;140121;140122;140123 140115 9 NPDTQWITK FEVILIDPFHKAIRRNPDTQWITKPVHKHR HKAIRRNPDTQWITKPVHKHREMRGLTSAG R N P T K P 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 9 0 1101.5455 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 145 153 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 0.030109 49.536 By MS/MS 1 1.6919 1.5781 NaN 1 Median 1.6919 1.5781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10483000 4029500 6454000 10483000 4029500 6454000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26164 2555 27561 139287 140124 140124 1 NPDTQWITKPVHK FEVILIDPFHKAIRRNPDTQWITKPVHKHR RRNPDTQWITKPVHKHREMRGLTSAGRKSR R N P H K H 0 0 1 1 0 1 0 0 1 1 0 2 0 0 2 0 2 1 0 1 0 0 13 1 1562.8205 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 145 157 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2;3 7.5346E-06 110.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 1 3 3 1 0.87407 0.88644 31.462 19 Median 0.79639 0.8522 12.505 7 2 Median 1.0034 0.96886 52.016 4 1 Median 0.87407 0.8692 NaN 1 0 Median 1.2425 1.1199 34.219 3 0 Median 0.8196 0.88644 35.92 3 0 Median 1.0656 0.92479 NaN 1 0 Median 334060000 169920000 164130000 145180000 77862000 67322000 55719000 22830000 32890000 20381000 11406000 8974800 13845000 6373600 7471300 87165000 45772000 41393000 11761000 5680200 6080800 26165 2555 27562 139288;139289;139290;139291;139292;139293;139294;139295;139296;139297;139298;139299;139300;139301;139302;139303;139304;139305;139306 140125;140126;140127;140128;140129;140130;140131;140132;140133;140134;140135;140136;140137;140138;140139;140140;140141;140142;140143;140144;140145 140126 21 NPDVDTSFLPDRDREEEENR MEREEITTKKRKLGKNPDVDTSFLPDRDRE TSFLPDRDREEEENRLREELRQEWEAKQEK K N P N R L 0 3 2 4 0 0 4 0 0 0 1 0 0 1 2 1 1 0 0 1 0 0 20 2 2432.084 Q14320;B0S8I6;Q9Y247 Q14320 159 178 FAM50A;FAM50B Protein FAM50A;Protein FAM50B no no 3;4 0.00064961 27.838 By MS/MS 2 0.66772 0.78724 12.537 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66772 0.78724 12.537 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23476000 14064000 9411800 0 0 0 0 0 0 23476000 14064000 9411800 0 0 0 0 0 0 0 0 0 26166 2873;4373 27563 139307;139308 140146;140147 140147 2 NPEAALSPTFR LQRRRKQDSGHLDLRNPEAALSPTFRSDSP LDLRNPEAALSPTFRSDSPVPTAPTSGGPK R N P F R S 2 1 1 0 0 0 1 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 11 0 1201.6091 Q86U44;B4E349;F5H6D8;B4DTN4 Q86U44 37 47 METTL3 N6-adenosine-methyltransferase 70 kDa subunit yes no 2 0.00014249 111.61 By MS/MS By MS/MS 1 3 0.76724 0.70908 35.23 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63377 0.64827 NaN 1 1 Median 0.92881 0.77559 40.767 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10957000 5846200 5110700 0 0 0 0 0 0 7634900 4344500 3290400 3321900 1501700 1820200 0 0 0 0 0 0 26167 3271 27564 139309;139310;139311;139312 140148;140149;140150 140149 3 NPEFFEHR AFALMYEGRRVAILRNPEFFEHRKEERCAR RRVAILRNPEFFEHRKEERCARQWGTTCKN R N P H R K 0 1 1 0 0 0 2 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 8 0 1074.4883 O43252 O43252 340 347 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.0007736 98.299 By MS/MS By MS/MS 1 1 1.095 1.0002 18.682 2 Median 0.9111 0.8764 NaN 1 1 Median 1.316 1.1414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10752000 6003900 4748200 6875800 4117200 2758500 3876400 1886700 1989700 0 0 0 0 0 0 0 0 0 0 0 0 26168 1561 27565 139313;139314 140151;140152 140151 2 NPEGRFPDLTVELNR FKSKILKQVISLQTKNPEGRFPDLTVELNR NPEGRFPDLTVELNRWDTAFDHEKARKTGL K N P N R W 0 2 2 1 0 0 2 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 15 1 1755.8904 P52701;A0A494C0M1;A0A087WWJ1 P52701 897 911 MSH6 DNA mismatch repair protein Msh6 yes no 3 0.0064932 39.005 By MS/MS 1 1.6319 1.9847 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6319 1.9847 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7367900 3347000 4020900 0 0 0 0 0 0 7367900 3347000 4020900 0 0 0 0 0 0 0 0 0 26169 2453 27566 139315 140153 140153 1 NPEISHLLNNPDIMR QLIMANPQMQQLIQRNPEISHLLNNPDIMR NPEISHLLNNPDIMRQTLEIARNPAMMQEM R N P M R Q 0 1 3 1 0 0 1 0 1 2 2 0 1 0 2 1 0 0 0 0 0 0 15 0 1761.8832 Q9UHD9 Q9UHD9 218 232 UBQLN2 Ubiquilin-2 yes yes 2;3 0.00020537 48.741 By MS/MS By matching 2 1 0.71225 0.68221 17.452 3 Plateau 0.58982 0.57583 23.974 2 1 Median 0.57177 0.53593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13748000 8553200 5195000 11063000 6993500 4069500 2685300 1559700 1125600 0 0 0 0 0 0 0 0 0 0 0 0 26170 4277 27567 139316;139317;139318 140154;140155;140156 140155 3 NPEISHMLNNPELMR HMIMANPQMQQLMERNPEISHMLNNPELMR NPEISHMLNNPELMRQTMELARNPAMMQEM R N P M R Q 0 1 3 0 0 0 2 0 1 1 2 0 2 0 2 1 0 0 0 0 0 0 15 0 1793.8553 Q9NRR5 Q9NRR5 232 246 UBQLN4 Ubiquilin-4 yes yes 3 0.00019032 46.964 By MS/MS 1 0.59046 0.56941 NaN 1 Median 0.59046 0.56941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6391000 3674000 2717000 6391000 3674000 2717000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26171 4087 27568 139319 140157;140158 140157 2 NPELPNAAQAQK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ VPRNPELPNAAQAQKEEQLKIDEAESLNDE R N P Q K E 3 0 2 0 0 2 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1279.6521 O60264 O60264 803 814 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.012467 57.598 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.75067 0.70586 10.208 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57632 0.62164 NaN 1 0 Median 0.83159 0.69671 NaN 1 1 Median 0.67764 0.71513 NaN 1 1 Median 0.96184 0.79713 NaN 1 0 Median 6011200 3177500 2833700 0 0 0 0 0 0 2163400 1220900 942410 1053400 547600 505750 1586800 883140 703660 1207700 525810 681850 26172 1608 27569 139320;139321;139322;139323;139324;139325 140159;140160;140161;140162;140163;140164;140165;140166 140162 8 NPELPNAAQAQKEEQLK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ ELPNAAQAQKEEQLKIDEAESLNDEELEEK R N P L K I 3 0 2 0 0 3 3 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 17 1 1906.9749 O60264 O60264 803 819 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 6.3514E-06 76.586 By MS/MS By MS/MS By MS/MS 1 1 1 0.79086 0.85874 4.9004 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69493 0.80471 NaN 1 0 Median 0.90149 0.85874 NaN 1 0 Median 0.79086 0.88582 NaN 1 0 Median NaN NaN NaN 0 0 Median 23075000 12997000 10079000 0 0 0 0 0 0 12452000 7264200 5187800 3419900 1656700 1763200 7203500 4076000 3127600 0 0 0 26173 1608 27570 139326;139327;139328 140167;140168;140169;140170;140171 140170 5 NPELQNLLLDDFFK IRSVFLGKIKDAFDRNPELQNLLLDDFFKS RNPELQNLLLDDFFKSAVENCQDSWRRAVS R N P F K S 0 0 2 2 0 1 1 0 0 0 4 1 0 2 1 0 0 0 0 0 0 0 14 0 1704.8723 P52209 P52209 383 396 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 2 0.00037473 72.006 By MS/MS By MS/MS 2 1 0.87866 0.87183 21.941 3 Plateau NaN NaN NaN 0 0 Median 0.86059 0.7335 30.912 2 0 Median 0.71846 0.70967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12559000 6099300 6459800 0 0 0 8446300 3980100 4466200 4112800 2119200 1993600 0 0 0 0 0 0 0 0 0 26174 2447 27571 139329;139330;139331 140172;140173;140174 140174 3 NPELSTQLIDIIHTAAAR WLAGLPLQLAHLGSRNPELSTQLIDIIHTA LSTQLIDIIHTAAARANKELLKSLQATALR R N P A R A 3 1 1 1 0 1 1 0 1 3 2 0 0 0 1 1 2 0 0 0 0 0 18 0 1962.0534 Q9NXF1 Q9NXF1 566 583 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.0086113 23.1 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.96409 0.99696 5.1773 5 Median NaN NaN NaN 0 0 Median 1.2342 1.0683 NaN 1 0 Median 0.91041 0.97301 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9491 0.96836 4.1161 2 0 Median 1.1857 1.0447 NaN 1 0 Median 17149000 8367000 8781800 0 0 0 5086800 2252500 2834300 4552800 2378800 2174000 0 0 0 7241000 3605400 3635700 268070 130270 137800 26175 4163 27572 139332;139333;139334;139335;139336 140175;140176;140177 140177 3 NPENWAYYK RLEDAADVYRGLQERNPENWAYYKGLEKAL RGLQERNPENWAYYKGLEKALKPANMLERL R N P Y K G 1 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 2 0 0 0 9 0 1183.5298 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 254 262 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.0052544 72.485 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0463 0.96411 15.791 4 Median 1.0687 1.0375 NaN 1 1 Median 1.0245 0.89591 NaN 1 0 Median 1.1274 1.2356 NaN 1 1 Median 1.0131 0.87902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21745000 10121000 11624000 7545500 3669100 3876500 4721000 2132600 2588300 7613300 3515500 4097800 1865000 803640 1061300 0 0 0 0 0 0 26176 213 27573 139337;139338;139339;139340 140178;140179;140180 140179 3 NPEPELLVR VGLSFCGADVGGFFKNPEPELLVRWYQMGA VGGFFKNPEPELLVRWYQMGAYQPFFRAHA K N P V R W 0 1 1 0 0 0 2 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 9 0 1065.5819 E9PKU7;Q14697;F5H6X6 Q14697 654 662 GANAB Neutral alpha-glucosidase AB no no 2 0.00055831 114.5 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 4 2 2 2 1 1.1287 0.97167 27 14 Median 0.93389 0.88675 34.811 4 0 Median 1.1634 0.95953 24.635 3 1 Median 0.74589 0.77193 37.666 2 0 Median 1.2342 0.96879 2.2001 2 0 Median 1.0399 1.0572 13.878 2 0 Median 1.6993 1.4229 NaN 1 0 Median 289930000 142990000 146940000 119860000 68634000 51229000 72826000 27306000 45520000 42182000 21445000 20737000 23912000 10047000 13865000 31100000 15541000 15559000 48489 16364 32125 26177 2896;951 27574 139341;139342;139343;139344;139345;139346;139347;139348;139349;139350;139351;139352;139353;139354;139355 140181;140182;140183;140184;140185;140186;140187;140188;140189;140190;140191;140192 140183 12 NPEQEPIPIVLR PNQQFGVSLQHLQEKNPEQEPIPIVLRETV QEKNPEQEPIPIVLRETVAYLQAHALTTEG K N P L R E 0 1 1 0 0 1 2 0 0 2 1 0 0 0 3 0 0 0 0 1 0 0 12 0 1403.7773 Q07960;H0YE29 Q07960 253 264 ARHGAP1 Rho GTPase-activating protein 1 yes no 2 4.9695E-06 114.84 By MS/MS By matching By matching By matching By matching 1 1 1 1 2 0.7839 0.72124 10.011 6 Median 0.60491 0.60343 NaN 1 0 Median 0.80995 0.70629 NaN 1 0 Median 0.73024 0.73651 NaN 1 0 Median 0.87532 0.7679 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83546 0.72885 12.154 2 0 Median 8094600 4602800 3491800 3447200 2129200 1318000 1003900 569640 434300 2631400 1332600 1298700 162060 82611 79450 0 0 0 850010 488700 361320 26178 2734 27575 139356;139357;139358;139359;139360;139361 140193;140194 140193 2 NPEQVDLYQFMAK SITANYTDQWERWWKNPEQVDLYQFMAKDN WKNPEQVDLYQFMAKDNVPFHSLVFPCSAL K N P A K D 1 0 1 1 0 2 1 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 13 0 1581.7497 P56192 P56192 542 554 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 4.99E-05 88.496 By MS/MS By matching 1 1 0.99297 0.90437 12.349 2 Median 1.0187 0.9869 NaN 1 0 Median 0.96787 0.82875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10762000 5211700 5549900 9694900 4704000 4990900 1066700 507730 558960 0 0 0 0 0 0 0 0 0 0 0 0 26179 2508 27576 139362;139363 140195;140196 140195 2 NPEVEFCGYTTTHPSESK EDHTLGNSLRYMIMKNPEVEFCGYTTTHPS VEFCGYTTTHPSESKINLRIQTRGTLPAVE K N P S K I 0 0 1 0 1 0 3 1 1 0 0 1 0 1 2 2 3 0 1 1 0 0 18 0 2081.9 P0DPB6;A0A0R4J2F3 P0DPB6 62 79 yes no 3 1.179E-06 77.39 By MS/MS 1 0.76015 0.73106 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76015 0.73106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6355300 3755000 2600300 0 0 0 0 0 0 6355300 3755000 2600300 0 0 0 0 0 0 0 0 0 26180 1932 27577 139364 140197;140198 140197 2 NPEVGLKPVWYSPK PEAQEEMKEVAKHPKNPEVGLKPVWYSPKV KNPEVGLKPVWYSPKVFIEGADAETFSEGE K N P P K V 0 0 1 0 0 0 1 1 0 0 1 2 0 0 3 1 0 1 1 2 0 0 14 1 1612.8613 P07814;V9GYZ6 P07814 536 549 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 1.2862E-05 124.12 By MS/MS By MS/MS 2 3 0.85933 0.80479 15.241 5 Median 0.82206 0.77402 5.5125 2 0 Median 0.99376 0.95557 19.37 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72922000 41362000 31560000 61783000 35565000 26218000 11139000 5797500 5341900 0 0 0 0 0 0 0 0 0 0 0 0 26181 1892 27578 139365;139366;139367;139368;139369 140199;140200;140201;140202;140203;140204;140205;140206 140202 8 NPEVPVNFAEFSK YAFFVQTCREEHKKKNPEVPVNFAEFSKKC KKNPEVPVNFAEFSKKCSERWKTMSGKEKS K N P S K K 1 0 2 0 0 0 2 0 0 0 0 1 0 2 2 1 0 0 0 2 0 0 13 0 1476.7249 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 31 43 HMGB3 High mobility group protein B3 yes no 2 9.13E-07 100.55 By MS/MS By MS/MS By MS/MS 1 1 1 0.76329 0.69779 11.218 3 Median 0.62565 0.58277 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.76329 0.71601 NaN 1 0 Median 0.84155 0.69779 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59624000 33311000 26313000 8171800 4785200 3386600 0 0 0 44719000 25039000 19680000 6732800 3486500 3246300 0 0 0 0 0 0 26182 880 27579 139370;139371;139372 140207;140208;140209;140210;140211;140212 140209 6 NPEVPVNFAEFSKK YAFFVQTCREEHKKKNPEVPVNFAEFSKKC KNPEVPVNFAEFSKKCSERWKTMSGKEKSK K N P K K C 1 0 2 0 0 0 2 0 0 0 0 2 0 2 2 1 0 0 0 2 0 0 14 1 1604.8199 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 31 44 HMGB3 High mobility group protein B3 yes no 2;3 1.042E-07 100.93 By MS/MS By MS/MS 2 1 0.75074 0.74554 14.894 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7203 0.7151 5.8959 2 0 Median 1.0167 0.91606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84309000 47769000 36540000 0 0 0 0 0 0 76955000 44028000 32927000 7354300 3741300 3612900 0 0 0 0 0 0 26183 880 27580 139373;139374;139375 140213;140214;140215;140216;140217 140215 5 NPFDTFFGQR HGDPHAMFAEFFGGRNPFDTFFGQRNGEEG FFGGRNPFDTFFGQRNGEEGMDIDDPFSGF R N P Q R N 0 1 1 1 0 1 0 1 0 0 0 0 0 3 1 0 1 0 0 0 0 0 10 0 1227.5673 P25685;M0R080;M0QYT3;M0QXK0;M0R128;A0A1B0GX60;M0R1D6;M0QZD0 P25685 110 119 DNAJB1 DnaJ homolog subfamily B member 1 yes no 2 0.00033566 86.011 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 4 1 2 1 0.92942 0.9282 14.971 10 Median 0.8669 0.86326 NaN 1 0 Median 0.8578 0.75887 NaN 1 0 Median 0.92001 0.9282 6.2017 4 0 Median 1.0097 0.89714 NaN 1 0 Median 1.1928 1.2096 1.8567 2 0 Median 1.1822 1.0421 NaN 1 0 Median 25954000 13230000 12725000 10082000 5353100 4729300 525040 274740 250300 11856000 5992200 5863800 1376300 679180 697140 1999000 882000 1117000 115670 48530 67143 26184 2134 27581 139376;139377;139378;139379;139380;139381;139382;139383;139384;139385 140218;140219;140220;140221;140222;140223;140224;140225;140226 140222 9 NPFGNAGLLLGEAGK MDKGKELSGLGSALKNPFGNAGLLLGEAGK NPFGNAGLLLGEAGKQLRRRAGLGSGLSLS K N P G K Q 2 0 2 0 0 0 1 4 0 0 3 1 0 1 1 0 0 0 0 0 0 0 15 0 1456.7674 P49748;G3V1M7 P49748 493 507 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.0017407 56.359 By MS/MS 1 0.56082 0.52547 NaN 1 Median 0.56082 0.52547 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14431000 8446500 5984600 14431000 8446500 5984600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26185 2394 27582 139386 140227 140227 1 NPFLAAVTTNR RLKSYENQKPPFDAKNPFLAAVTTNRKLNQ FDAKNPFLAAVTTNRKLNQGTERHLMHLEL K N P N R K 2 1 2 0 0 0 0 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 11 0 1202.6408 P16435;H0Y4R2;E7EMD0 P16435 280 290 POR NADPH--cytochrome P450 reductase yes no 2 0.00015337 82.749 By MS/MS 1 0.80628 0.76283 NaN 1 Median 0.80628 0.76283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12296000 6411100 5885200 12296000 6411100 5885200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26186 2030 27583 139387 140228;140229;140230 140229 3 NPFVHELR SAGASDARLLAPPGRNPFVHELRLSALQKA LLAPPGRNPFVHELRLSALQKAQVALMTLT R N P L R L 0 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 1010.5298 Q8NF37 Q8NF37 30 37 LPCAT1 Lysophosphatidylcholine acyltransferase 1 yes yes 2 0.027074 47.657 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.96358 1.0061 35.511 3 Median 0.96358 0.96125 NaN 1 1 Median 2.0964 1.8168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95329 1.0061 NaN 1 0 Median NaN NaN NaN 0 0 Median 9149600 3753700 5395900 3358800 1590700 1768100 1715700 427510 1288200 0 0 0 296540 117810 178730 3778600 1617700 2160800 0 0 0 26187 3433 27584 139388;139389;139390;139391 140231;140232 140232 2 NPFYSLEMPIR LLRKIYEIYSDFALKNPFYSLEMPIRCELF FALKNPFYSLEMPIRCELFDQNLKLALEVA K N P I R C 0 1 1 0 0 0 1 0 0 1 1 0 1 1 2 1 0 0 1 0 0 0 11 0 1365.6751 E9PKS9;E9PQE8;E9PN70;Q9Y296 E9PKS9 91 101 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 2 0.00019545 75.378 By MS/MS By matching 1 1 1.0367 0.92782 38.588 2 Median 0.74881 0.70626 NaN 1 0 Median 1.4352 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3582800 2085100 1497700 3484500 2047000 1437500 98256 38069 60187 0 0 0 0 0 0 0 0 0 0 0 0 26188 949 27585 139392;139393 140233;140234 140233 2 NPGFEIIHGLLDR GAKNYRHLCAVYYNKNPGFEIIHGLLDRIM NKNPGFEIIHGLLDRIMQLLDVPPGEDKGG K N P D R I 0 1 1 1 0 0 1 2 1 2 2 0 0 1 1 0 0 0 0 0 0 0 13 0 1479.7834 Q9NSD9 Q9NSD9 505 517 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 1.4788E-18 137.89 By MS/MS By MS/MS By matching 1 1 1 0.7335 0.68746 51.975 2 Median 0.98547 0.99279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54596 0.47603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2330300 1218200 1112100 2237400 1157100 1080200 0 0 0 0 0 0 92960 61047 31913 0 0 0 0 0 0 26189 4102 27586 139394;139395;139396 140235;140236 140236 2 NPGFYVEANPMPTFK IGTAEPDYGALYEGRNPGFYVEANPMPTFK NPGFYVEANPMPTFKCAVKALFDYKAQRED R N P F K C 1 0 2 0 0 0 1 1 0 0 0 1 1 2 3 0 1 0 1 1 0 0 15 0 1710.8076 P19174 P19174 779 793 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.039531 24.291 By MS/MS By matching 1 1 0.51786 0.48695 32.656 2 Median 0.39283 0.38655 NaN 1 0 Median 0.68269 0.61343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4284400 2903200 1381200 3768900 2632900 1136000 515550 270360 245180 0 0 0 0 0 0 0 0 0 0 0 0 26190 2062 27587 139397;139398 140237 140237 1 NPGLWLESVR RARAILEKSRLKNPKNPGLWLESVRLEYRA LKNPKNPGLWLESVRLEYRAGLKNIANTLM K N P V R L 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 10 0 1169.6193 O94906 O94906 776 785 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00041294 76.1 By MS/MS By MS/MS By MS/MS 1 2 2 1.0622 0.92506 28.898 5 Median 1.7668 1.7081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81589 0.87258 8.2595 2 0 Median 1.0958 0.97324 10.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25648000 13206000 12442000 5849400 2137200 3712100 0 0 0 17975000 10173000 7802300 1823400 895480 927890 0 0 0 0 0 0 26191 1735 27588 139399;139400;139401;139402;139403 140238;140239;140240;140241;140242 140240 5 NPGNQAAYEHFETMK ELTPQVVSAARILLRNPGNQAAYEHFETMK NPGNQAAYEHFETMKNQWIDNVEKMTGLVD R N P M K N 2 0 2 0 0 1 2 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 15 0 1735.7624 P18206 P18206 685 699 VCL Vinculin yes yes 2;3 9.3738E-05 80.979 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.86868 0.77226 12.21 8 Median 0.9081 0.87106 16.057 3 0 Plateau 0.86569 0.73149 4.6736 3 0 Median 0.87169 0.93115 NaN 1 0 Median 0.97553 0.8404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130120000 67155000 62964000 57548000 30293000 27256000 56764000 29155000 27610000 11668000 5454700 6212900 4138100 2253000 1885100 0 0 0 0 0 0 26192 2057 27589 139404;139405;139406;139407;139408;139409;139410;139411 140243;140244;140245;140246;140247;140248;140249;140250;140251;140252;140253;140254;140255;140256 140245 14 NPGPSGPQLR ______________________________ LDMYRNPGPSGPQLRDFSSIIQTCSGNIQR R N P L R D 0 1 1 0 0 1 0 2 0 0 1 0 0 0 3 1 0 0 0 0 0 0 10 0 1021.5305 B1AJQ6;Q86Y82 B1AJQ6 11 20 STX12 Syntaxin-12 yes no 2 0.029185 34.387 By MS/MS By MS/MS 1 1 0.99091 0.9003 4.5776 2 Median 0.89783 0.87163 NaN 1 0 Median 1.0936 0.92992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2662600 1421800 1240700 1816400 1004200 812240 846160 417660 428500 0 0 0 0 0 0 0 0 0 0 0 0 26193 563 27590 139412;139413 140257;140258 140257 2 NPHAPTIHFNYR LPFCAMGVSSVIHPKNPHAPTIHFNYRYFE HPKNPHAPTIHFNYRYFEVEEADGNKQWWF K N P Y R Y 1 1 2 0 0 0 0 0 2 1 0 0 0 1 2 0 1 0 1 0 0 0 12 0 1465.7215 P36551 P36551 251 262 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes yes 3 0.00017022 65.179 By MS/MS By MS/MS By MS/MS 1 1 2 0.84329 0.87661 17.683 4 Median 0.81794 0.81581 NaN 1 0 Median 1.146 1.0005 NaN 1 0 Median 0.7713 0.79576 23.851 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27418000 14763000 12655000 13279000 7378800 5899900 7618800 3900600 3718200 6520200 3483600 3036600 0 0 0 0 0 0 0 0 0 26194 2259 27591 139414;139415;139416;139417 140259;140260;140261;140262 140260 4 NPHNDRFVLSK VLFFHTMRYKSQDPRNPHNDRFVLSKGHAA QDPRNPHNDRFVLSKGHAAPILYAVWAEAG R N P S K G 0 1 2 1 0 0 0 0 1 0 1 1 0 1 1 1 0 0 0 1 0 0 11 1 1325.684 P29401;E9PFF2;F8W888 P29401 65 75 TKT Transketolase yes no 3 0.050007 17.739 By MS/MS 2 0.93607 0.93654 7.2469 2 Median 0.93607 0.93654 7.2469 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20496000 10590000 9906300 20496000 10590000 9906300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26195 2173 27592 139418;139419 140263 140263 1 NPHPSSAFLNLIGFVSR VGVGRAGSVRMRDLRNPHPSSAFLNLIGFV HPSSAFLNLIGFVSRRELGSIDGVQQISLE R N P S R R 1 1 2 0 0 0 0 1 1 1 2 0 0 2 2 3 0 0 0 1 0 0 17 0 1854.9741 P53004;C9J1E1 P53004 29 45 BLVRA Biliverdin reductase A yes no 2;3 0.00010656 49.423 By MS/MS By matching 2 3 0.79427 0.73987 13.477 5 Median 0.72514 0.70914 5.9993 2 0 Median 0.90255 0.75077 17.036 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16002000 8473200 7528400 7315800 4100000 3215800 8685800 4373200 4312600 0 0 0 0 0 0 0 0 0 0 0 0 26196 2463 27593 139420;139421;139422;139423;139424 140264;140265 140265 2 NPIHAIGLLIR ENVMEDICSKLQEIRNPIHAIGLLIREMDY QEIRNPIHAIGLLIREMDYETEVEMEKGFN R N P I R E 1 1 1 0 0 0 0 1 1 3 2 0 0 0 1 0 0 0 0 0 0 0 11 0 1215.7452 Q12769;G3V198;E9PR16 Q12769 667 677 NUP160 Nuclear pore complex protein Nup160 yes no 2;3 0.00077826 51.092 By matching By matching By MS/MS By matching By matching 1 1 3 1 1 1.0602 1.0012 5.5389 7 Median 1.0602 1.0692 NaN 1 0 Median 1.0663 0.94055 NaN 1 0 Median 0.91947 1.0099 0.65851 3 0 Plateau 1.1887 1.0241 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0666 0.90488 NaN 1 0 Median 14407000 6909500 7497200 1692500 691040 1001400 221320 77354 143970 11894000 5851400 6042400 503330 240000 263330 0 0 0 95834 49717 46117 26197 2756 27594 139425;139426;139427;139428;139429;139430;139431 140266;140267;140268;140269 140268 4 NPILWNVADVVIK GTYTLYLIIGDATLKNPILWNVADVVIKFP LKNPILWNVADVVIKFPEEEAPSTVLSQNL K N P I K F 1 0 2 1 0 0 0 0 0 2 1 1 0 0 1 0 0 1 0 3 0 0 13 0 1479.8449 P04844;Q5JYR3;H0Y5M1 P04844 492 504 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.0011223 58.978 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0595 1.0124 8.4551 4 Median 0.87932 0.87277 NaN 1 1 Median 1.1961 1.04 2.4443 2 0 Median 0.9837 1.0026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75502000 34610000 40892000 3119500 1657900 1461500 70911000 32229000 38682000 1374800 662140 712640 0 0 0 0 0 0 96873 61137 35736 26198 1854 27595 139432;139433;139434;139435;139436 140270;140271;140272;140273;140274 140274 5 NPITGFGK DCYKNFVAKKCAGCKNPITGFGKGSSVVAY KKCAGCKNPITGFGKGSSVVAYEGQSWHDY K N P G K G 0 0 1 0 0 0 0 2 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 832.4443 Q5JXI8 Q5JXI8 226 233 FHL1 yes yes 2 0.019184 47.349 By MS/MS 1 1.0732 0.89839 NaN 1 Median NaN NaN NaN 0 0 Median 1.0732 0.89839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40625000 19595000 21030000 0 0 0 40625000 19595000 21030000 0 0 0 0 0 0 0 0 0 0 0 0 26199 3060 27596 139437 140275 140275 1 NPKPATVFSHK HIVLMLADDMACNPRNPKPATVFSHKNMEL CNPRNPKPATVFSHKNMELNVYGDDVEVDY R N P H K N 1 0 1 0 0 0 0 0 1 0 0 2 0 1 2 1 1 0 0 1 0 0 11 1 1224.6615 Q92643;A6NEM5 Q92643 96 106 PIGK GPI-anchor transamidase yes no 3 0.010159 30.872 By matching By MS/MS By matching 1 1 1 0.72353 0.78844 26.665 3 Median 0.57914 0.54179 NaN 1 0 Median 0.99809 0.90752 NaN 1 0 Median 0.72353 0.78844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1400400 766150 634270 487040 326890 160150 781530 378460 403070 131850 60796 71052 0 0 0 0 0 0 0 0 0 26200 510 27597 139438;139439;139440 140276 140276 1 NPLGSTHPEATLK DYWEDDLRRRRRFVRNPLGSTHPEATLKTA VRNPLGSTHPEATLKTAVEHATDEDILAKG R N P L K T 1 0 1 0 0 0 1 1 1 0 2 1 0 0 2 1 2 0 0 0 0 0 13 0 1363.7096 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1998 2010 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2;3 0.00042442 73.781 By MS/MS By MS/MS 1 2 0.87074 0.81071 39.783 2 Median 0.6166 0.61192 NaN 1 0 Median 1.2296 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8462300 4372800 4089500 2980200 1909100 1071200 5482100 2463700 3018400 0 0 0 0 0 0 0 0 0 0 0 0 26201 470 27598 139441;139442;139443 140277;140278;140279;140280;140281 140279 5 NPLIINSIIDK GGLMFNTGIGQHILKNPLIINSIIDKAALR HILKNPLIINSIIDKAALRPTDVVLEVGPG K N P D K A 0 0 2 1 0 0 0 0 0 4 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1238.7234 Q9UNQ2;A0A0C4DGB1;A0A494C0G7;D6RCL3 Q9UNQ2 41 51 DIMT1 Probable dimethyladenosine transferase yes no 2 0.0019387 62.823 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.87606 0.78497 17.935 6 Median 0.92973 0.89648 NaN 1 0 Median 0.85059 0.7135 NaN 1 0 Median 0.9023 0.8636 NaN 1 0 Median 1.0808 0.91408 NaN 1 0 Median 0.61112 0.60563 NaN 1 0 Median 0.75306 0.64351 NaN 1 0 Median 16719000 9819900 6898700 4255900 2629600 1626300 4991600 2913900 2077700 4238100 2309400 1928700 203080 94625 108450 2945300 1832700 1112600 84755 39782 44974 26202 4348 27599 139444;139445;139446;139447;139448;139449 140282;140283;140284 140284 2 NPLLDLTALEDKPLDEGYGISSVPSASNSK IDEKGLKTMVSLGVKNPLLDLTALEDKPLD EGYGISSVPSASNSKSIKENSNAAIIKRFN K N P S K S 2 0 2 3 0 0 2 2 0 1 5 2 0 0 3 5 1 0 1 1 0 0 30 1 3129.5718 P32780;E9PI26 P32780 264 293 GTF2H1 General transcription factor IIH subunit 1 yes no 3 5.7393E-06 38.012 By MS/MS 1 0.48693 0.50825 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48693 0.50825 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12428000 9640800 2787400 0 0 0 0 0 0 12428000 9640800 2787400 0 0 0 0 0 0 0 0 0 26203 2219 27600 139450 140285 140285 1 NPLPEYLSR MSPLSNNSLFLSYHRNPLPEYLSRGLMVSL FLSYHRNPLPEYLSRGLMVSLSTDDPLQFH R N P S R G 0 1 1 0 0 0 1 0 0 0 2 0 0 0 2 1 0 0 1 0 0 0 9 0 1087.5662 H0Y360;Q01433;H0YF16 H0Y360 693 701 AMPD2 AMP deaminase 2 yes no 2 0.0028118 69.423 By MS/MS By matching 1 1 0.73283 0.67491 19.685 2 Median 0.60687 0.58721 NaN 1 0 Median 0.88494 0.7757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5274300 3121000 2153200 3675500 2213100 1462400 1598700 907890 690850 0 0 0 0 0 0 0 0 0 0 0 0 26204 1141 27601 139451;139452 140286 140286 1 NPLVAVYYTNR KYPEAAACYGRAITRNPLVAVYYTNRALCY AITRNPLVAVYYTNRALCYLKMQQHEQALA R N P N R A 1 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 2 2 0 0 11 0 1308.6826 Q9UNE7 Q9UNE7 56 66 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 6.4632E-05 152.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.91588 0.85085 6.7455 4 Median 0.92604 0.86445 NaN 1 0 Median 0.90583 0.75336 NaN 1 0 Median 0.85954 0.83746 NaN 1 0 Median 1.0465 0.87284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93212000 45570000 47642000 68170000 33089000 35081000 9624900 4867900 4757000 11558000 5762500 5795800 3858900 1850700 2008200 0 0 0 0 0 0 26205 4342 27602 139453;139454;139455;139456;139457 140287;140288;140289;140290;140291;140292;140293;140294;140295 140288 9 NPMKAMYPGTFYFQFKNLWEANDR ______________________________ TFYFQFKNLWEANDRNETWLCFTVEGIKRR R N P D R N 2 1 3 1 0 1 1 1 0 0 1 2 2 3 2 0 1 1 2 0 0 0 24 2 2967.3836 Q9NRW3 Q9NRW3 7 30 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 4 0.067963 6.8749 By MS/MS 1 0.81852 1.0814 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81852 1.0814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52935000 26737000 26198000 0 0 0 0 0 0 52935000 26737000 26198000 0 0 0 0 0 0 0 0 0 26206 4090 27603 139458 140296 140296 1 NPMVETLGTVLQLK ERFDSLTDLVEHYKKNPMVETLGTVLQLKQ KNPMVETLGTVLQLKQPLNTTRINAAEIES K N P L K Q 0 0 1 0 0 1 1 1 0 0 3 1 1 0 1 0 2 0 0 2 0 0 14 0 1541.8487 Q06124;A0A1W2PPU4;H0YF12 Q06124 200 213 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.0020582 45.137 By matching By MS/MS 1 1 0.79154 0.72025 13.064 2 Median 0.67788 0.65669 NaN 1 0 Median 0.92425 0.78995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5071400 2609400 2462100 1121500 650870 470650 3949900 1958500 1991400 0 0 0 0 0 0 0 0 0 0 0 0 26207 2721 27604 139459;139460 140297 140297 1 NPMYIHTSVSQDFSR SSSLNSGNYLNPACRNPMYIHTSVSQDFSR NPMYIHTSVSQDFSRSVPGTTSSPLVGDIS R N P S R S 0 1 1 1 0 1 0 0 1 1 0 0 1 1 1 3 1 0 1 1 0 0 15 0 1780.8203 Q9UQR0;B4DRC2;H0Y6S1 Q9UQR0 561 575 SCML2 Sex comb on midleg-like protein 2 yes no 2;3 3.3282E-10 110.86 By matching By MS/MS 1 3 0.72572 0.74434 19.849 4 Median NaN NaN NaN 0 0 Median 0.60343 0.5292 NaN 1 0 Median 0.77394 0.77885 7.6578 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56899000 31972000 24927000 0 0 0 932940 747670 185260 55966000 31224000 24741000 0 0 0 0 0 0 0 0 0 26208 4363 27605;27606 139461;139462;139463;139464 140298;140299;140300 140300 1943 3 NPNGPYPYTLK DALETLGFLNHYQMKNPNGPYPYTLKLCFS YQMKNPNGPYPYTLKLCFSTAQHAS_____ K N P L K L 0 0 2 0 0 0 0 1 0 0 1 1 0 0 3 0 1 0 2 0 0 0 11 0 1262.6295 A0A3B3ITJ4;M0QXS5;P14866 P14866 569 579 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.00014769 116.3 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 7 4 0.60443 0.59603 9.2325 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56869 0.55719 2.4906 4 1 Median 0.80361 0.68028 17.417 3 0 Plateau 0.59873 0.60095 8.2377 7 2 Median 0.75537 0.62027 8.9832 4 0 Median 439950000 268920000 171030000 0 0 0 0 0 0 141660000 87509000 54147000 16552000 8946100 7605900 254390000 157120000 97273000 27348000 15340000 12008000 26209 2011;436 27607 139465;139466;139467;139468;139469;139470;139471;139472;139473;139474;139475;139476;139477;139478;139479;139480;139481;139482 140301;140302;140303;140304;140305;140306;140307;140308;140309;140310;140311;140312;140313;140314;140315;140316;140317;140318;140319 140310 19 NPNNMQVLYTALQHSSELAPK TTIKLVIFNELSSARNPNNMQVLYTALQHS VLYTALQHSSELAPKFLAMVFQDLLTNKDD R N P P K F 2 0 3 0 0 2 1 0 1 0 3 1 1 0 2 2 1 0 1 1 0 0 21 0 2354.1689 Q8N201 Q8N201 455 475 INTS1 Integrator complex subunit 1 yes yes 3 0.074641 4.7567 By MS/MS 1 0.8106 0.90354 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8106 0.90354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2483900 1298300 1185600 0 0 0 0 0 0 2483900 1298300 1185600 0 0 0 0 0 0 0 0 0 26210 3360 27608 139483 140320 140320 1 NPNPFIPPDAASIVTEVNFTTTR IIDYNEEFRLFLSTRNPNPFIPPDAASIVT DAASIVTEVNFTTTRSGLRGQLLALTIQHE R N P T R S 2 1 3 1 0 0 1 0 0 2 0 0 0 2 4 1 4 0 0 2 0 0 23 0 2500.2598 Q8NCM8 Q8NCM8 3374 3396 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.060123 7.1117 By MS/MS 1 0.723 0.71456 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.723 0.71456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35209000 19370000 15839000 0 0 0 0 0 0 35209000 19370000 15839000 0 0 0 0 0 0 0 0 0 26211 3418 27609 139484 140321 140321 1 NPNTSEPQHLLVMK IPFNSTNKYQLSIHKNPNTSEPQHLLVMKG KNPNTSEPQHLLVMKGAPERILDRCSSILL K N P M K G 0 0 2 0 0 1 1 0 1 0 2 1 1 0 2 1 1 0 0 1 0 0 14 0 1606.8137 P05023 P05023 495 508 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2;3 9.1623E-99 274.62 By MS/MS By MS/MS By matching 5 8 1 0.87651 0.8004 19.981 14 Median 0.87207 0.80841 31.96 5 0 Median 0.90238 0.79093 6.5419 8 1 Median 0.84425 0.97674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 221660000 114430000 107230000 55399000 29613000 25786000 162570000 83031000 79539000 3690600 1787400 1903200 0 0 0 0 0 0 0 0 0 26212 1857 27610 139485;139486;139487;139488;139489;139490;139491;139492;139493;139494;139495;139496;139497;139498 140322;140323;140324;140325;140326;140327;140328;140329;140330;140331;140332;140333;140334;140335;140336;140337;140338;140339;140340 140329 19 NPPAFTELQLPR GAVLQIGDVKYKVERNPPAFTELQLPRYIM VERNPPAFTELQLPRYIMAGFPVCPKLSLE R N P P R Y 1 1 1 0 0 1 1 0 0 0 2 0 0 1 3 0 1 0 0 0 0 0 12 0 1381.7354 F6T1Q0;Q6L8Q7 F6T1Q0 160 171 PDE12 2,5-phosphodiesterase 12 yes no 2 0.0015768 51.276 By MS/MS 1 0.68491 0.66725 NaN 1 Median 0.68491 0.66725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4761700 2895700 1865900 4761700 2895700 1865900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26213 1050 27611 139499 140341;140342 140342 2 NPPGFAFVEFEDPR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD RNPPGFAFVEFEDPRDAADAVRELDGRTLC R N P P R D 1 1 1 1 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1620.7573 A0A0B4J1Z1;C9JAB2;Q16629;P84103;A0A087X2D0 P84103 44 57 SRSF7;SRSF3 Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3 no no 2 9.7392E-06 90.685 By MS/MS By MS/MS By MS/MS 3 3 3 0.68897 0.61524 6.3786 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61406 0.59824 7.7412 3 0 Median NaN NaN NaN 0 0 Median 0.62498 0.67116 3.0106 3 0 Median 0.76544 0.61323 1.4488 3 0 Median 110350000 64601000 45745000 0 0 0 0 0 0 16655000 9508600 7146300 0 0 0 64202000 39059000 25143000 29489000 16034000 13455000 26214 2668;214 27612 139500;139501;139502;139503;139504;139505;139506;139507;139508 140343;140344;140345;140346;140347;140348;140349;140350;140351;140352 140348 10 NPPGFAFVEFEDPRDAADAVR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD FVEFEDPRDAADAVRELDGRTLCGCRVRVE R N P V R E 4 2 1 3 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2319.092 P84103;A0A087X2D0 P84103 44 64 SRSF3 Serine/arginine-rich splicing factor 3 yes no 2;3 9.0698E-15 96.391 By matching By matching By matching By MS/MS By matching 1 1 1 6 1 0.57427 0.62075 25.266 10 Median 0.66653 0.71248 NaN 1 0 Median 0.70044 0.59486 NaN 1 0 Median 0.57919 0.62899 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56883 0.62075 31.536 6 0 Plateau 0.71773 0.60755 NaN 1 0 Median 215610000 127730000 87882000 2259300 1319000 940240 914520 507720 406790 629990 416980 213020 0 0 0 209600000 124260000 85341000 2201600 1221200 980350 26215 2668 27613 139509;139510;139511;139512;139513;139514;139515;139516;139517;139518 140353;140354;140355;140356;140357;140358;140359;140360;140361;140362;140363;140364 140359 12 NPPGFAFVEFEDPRDAEDAVR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD FVEFEDPRDAEDAVRGLDGKVICGSRVRVE R N P V R G 3 2 1 3 0 0 3 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2377.0975 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 45 65 SRSF7 Serine/arginine-rich splicing factor 7 yes no 3 0.00034392 29.766 By MS/MS By MS/MS By matching 1 3 1 0.65624 0.64112 42.445 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61424 0.64112 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65624 0.69781 52.592 3 0 Median 0.6968 0.59784 NaN 1 0 Median 18903000 11448000 7455100 0 0 0 0 0 0 9651100 5628600 4022500 0 0 0 8766900 5513300 3253600 485320 306290 179020 26216 214 27614 139519;139520;139521;139522;139523 140365;140366;140367;140368;140369;140370 140366 6 NPPIDDLIK LSAVQAARKLLSSDRNPPIDDLIKSGILPI LLSSDRNPPIDDLIKSGILPILVKCLERDD R N P I K S 0 0 1 2 0 0 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 9 0 1023.5601 O00629;O00505 O00505 104 112 KPNA4;KPNA3 Importin subunit alpha-3;Importin subunit alpha-4 no no 2 0.015962 43.083 By MS/MS 1 0.7007 0.69043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7007 0.69043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7897100 4150500 3746700 0 0 0 0 0 0 7897100 4150500 3746700 0 0 0 0 0 0 0 0 0 26217 1469;1475 27615 139524 140371;140372 140371 2 NPPNQSSNERPPSLLVIETK RGKIYKPSSRFADQKNPPNQSSNERPPSLL SSNERPPSLLVIETKKPPLKKGEKEKKKSN K N P T K K 0 1 3 0 0 1 2 0 0 1 2 1 0 0 4 3 1 0 0 1 0 0 20 1 2219.1546 O15042;E7ET15;H0Y8D9;E7EW00 O15042 169 188 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 3.0442E-07 52.185 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.47832 0.54177 16.446 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49672 0.56331 NaN 1 0 Median 0.63315 0.60847 NaN 1 0 Median 0.47828 0.53387 2.0762 2 0 Median 0.44887 0.39519 NaN 1 0 Median 45736000 29900000 15836000 0 0 0 0 0 0 21401000 13801000 7600500 4644300 2865200 1779100 19222000 12957000 6265000 468740 276980 191750 26218 1515 27616 139525;139526;139527;139528;139529 140373;140374;140375;140376;140377;140378 140373 6 NPPVNAISTTLLR EYTRLHNALALIRLRNPPVNAISTTLLRDI LRNPPVNAISTTLLRDIKEGLQKAVIDHTI R N P L R D 1 1 2 0 0 0 0 0 0 1 2 0 0 0 2 1 2 0 0 1 0 0 13 0 1394.7882 Q08426;C9JJE0 Q08426 18 30 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes no 2 0.026608 27.428 By MS/MS 1 0.72206 0.76961 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72206 0.76961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2808400 1673600 1134700 0 0 0 0 0 0 2808400 1673600 1134700 0 0 0 0 0 0 0 0 0 26219 2740 27617 139530 140379 140379 1 NPQAHIEGNMK RSSSFNTGRIEHLYKNPQAHIEGNMKLHYG HLYKNPQAHIEGNMKLHYGDLTDSTCLVKI K N P M K L 1 0 2 0 0 1 1 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 11 0 1237.5874 O60547 O60547 71 81 GMDS GDP-mannose 4,6 dehydratase yes yes 2 0.014119 37.191 By matching By MS/MS 1 1 0.83175 0.76178 8.0417 2 Median 0.73975 0.71967 NaN 1 0 Median 0.9352 0.80636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1122600 512740 609880 272430 148050 124380 850190 364690 485490 0 0 0 0 0 0 0 0 0 0 0 0 26220 1620 27618 139531;139532 140380;140381 140381 2 NPQMPQYSSPQPGSALSPR MNQSSIAQDRGYMQRNPQMPQYSSPQPGSA PQYSSPQPGSALSPRQPSGGQIHTGMGSYQ R N P P R Q 1 1 1 0 0 3 0 1 0 0 1 0 1 0 5 4 0 0 1 0 0 0 19 0 2040.9687 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 756 774 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3 8.2124E-13 98.592 By MS/MS By matching 2 2 0.46467 0.4547 21.997 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38632 0.42422 11.123 2 0 Median 0.62162 0.54392 26.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14675000 10414000 4260500 0 0 0 0 0 0 13797000 9884600 3912800 877250 529550 347690 0 0 0 0 0 0 26221 1480 27619 139533;139534;139535;139536 140382;140383 140382 2 NPQNSSQSADGLR KPTFSQTIALLNIYRNPQNSSQSADGLRCA YRNPQNSSQSADGLRCAVSDVEMQEHYDEF R N P L R C 1 1 2 1 0 2 0 1 0 0 1 0 0 0 1 3 0 0 0 0 0 0 13 0 1372.6331 P0DN76;Q01081 P0DN76 54 66 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.00012318 84.17 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 0.9272 0.80875 7.5928 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94253 0.90583 6.8971 2 0 Median 0.96429 0.80428 NaN 1 0 Median 0.8143 0.79102 NaN 1 0 Median 0.9272 0.80875 NaN 1 0 Median 10219000 5229800 4989000 0 0 0 0 0 0 4666000 2409100 2257000 4156400 2062100 2094300 829790 471920 357870 566610 286710 279900 26222 1930 27620 139537;139538;139539;139540;139541 140384;140385;140386;140387;140388 140387 5 NPQNSTVLAR QAKQRSPSKVKPPVRNPQNSTVLARGPASV KPPVRNPQNSTVLARGPASVPSVGKAVATA R N P A R G 1 1 2 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1098.5782 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 833 842 TCOF1 Treacle protein no no 2 0.00039551 78.334 By MS/MS By MS/MS 2 1 0.9375 0.80721 22.208 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84575 0.91845 29.585 2 0 Median 0.9375 0.80721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6920600 3471000 3449600 0 0 0 0 0 0 6404500 3226500 3178000 516050 244430 271620 0 0 0 0 0 0 26223 2816;891 27621 139542;139543;139544 140389;140390;140391 140389 3 NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK AVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ LTASMLASAPPQEQKQMLGERLFPLIQAMH R N P Q K Q 5 0 2 0 0 10 2 1 2 0 3 1 2 0 6 2 2 0 0 3 0 0 41 0 4456.2016 P11940;E7EQV3;E7ERJ7;H0YB75;H0YAS6;H0YAS7 P11940 519 559 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 4 2.1158E-06 36.937 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.381 0.36853 23.323 5 Median 0.33099 0.30542 6.2269 2 0 Median NaN NaN NaN 0 0 Median 0.381 0.38793 NaN 1 1 Median 0.43092 0.36853 NaN 1 1 Median 0.51903 0.5365 NaN 1 0 Median NaN NaN NaN 0 0 Median 40569000 29618000 10951000 24195000 16833000 7362300 0 0 0 10163000 8517800 1645600 1465800 1211500 254330 4744700 3055500 1689200 0 0 0 26224 1973 27622 139545;139546;139547;139548;139549 140392;140393;140394;140395;140396 140393 5 NPQSILKPHSPTYNDEGL LLLTGEVSWRPLVEKNPQSILKPHSPTYND SILKPHSPTYNDEGL_______________ K N P G L - 0 0 2 1 0 1 1 1 1 1 2 1 0 0 3 2 1 0 1 0 0 0 18 1 2008.9854 B1AKV4;F6UTR7;Q9NVA1 B1AKV4 202 219 UQCC1 Ubiquinol-cytochrome-c reductase complex assembly factor 1 yes no 3 0.00063469 34.395 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.78641 0.68914 16.375 4 Median 0.71239 0.66196 NaN 1 0 Median 1.0548 0.88689 NaN 1 0 Median 0.64353 0.60439 NaN 1 0 Median 0.86812 0.71743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33112000 19409000 13703000 18750000 11197000 7553300 4761600 2268500 2493100 8365800 5334300 3031500 1234600 609000 625640 0 0 0 0 0 0 26225 568 27623 139550;139551;139552;139553 140397;140398;140399 140397 3 NPQSTEPVLGGGEPPFHGHR SCISILVCTGVYNPRNPQSTEPVLGGGEPP EPVLGGGEPPFHGHRDLCFSPGLMEASHVV R N P H R D 0 1 1 0 0 1 2 4 2 0 1 0 0 1 4 1 1 0 0 1 0 0 20 0 2112.0137 Q9BXW7;A8MYZ9 Q9BXW7 370 389 CECR5 Cat eye syndrome critical region protein 5 yes no 3 1.1973E-05 40.968 By MS/MS By MS/MS 1 1 0.83958 0.81231 28.461 2 Median NaN NaN NaN 0 0 Median 1.1512 0.99339 NaN 1 0 Median 0.6123 0.66423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9300400 5793900 3506500 0 0 0 2925200 1670400 1254700 6375200 4123500 2251800 0 0 0 0 0 0 0 0 0 26226 3882 27624 139554;139555 140400;140401;140402 140401 3 NPSAAFFCVAR FAYGSNLLTERIHLRNPSAAFFCVARLQDF IHLRNPSAAFFCVARLQDFKLDFGNSQGKT R N P A R L 3 1 1 0 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 11 0 1238.5866 O75223;B8ZZK2;A0A0B4J1Y4 O75223 35 45 GGCT Gamma-glutamylcyclotransferase yes no 2 0.0038068 71.223 By MS/MS By MS/MS 1 1 0.10037 0.081179 NaN 1 Median NaN NaN NaN 0 0 Median 0.10037 0.081179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 846900 802120 44779 0 0 0 329050 284270 44779 0 0 0 517860 517860 0 0 0 0 0 0 0 26227 1656 27625 139556;139557 140403;140404 140404 2 NPSFSEEPWLEIK KELKSQGNYLLECTKNPSFSEEPWLEIKHL TKNPSFSEEPWLEIKHLHESLLQQLQDSVQ K N P I K H 0 0 1 0 0 0 3 0 0 1 1 1 0 1 2 2 0 1 0 0 0 0 13 0 1574.7617 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2215 2227 SYNE2 Nesprin-2 yes no 2 0.0015178 52.49 By MS/MS 1 0.64341 0.70666 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64341 0.70666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1689600 935040 754560 0 0 0 0 0 0 1689600 935040 754560 0 0 0 0 0 0 0 0 0 26228 3521 27626 139558 140405;140406 140405 2 NPSGINDDYGQLK LTEFRSLVIKNSTSRNPSGINDDYGQLKNF SRNPSGINDDYGQLKNFKKFKKVTYPGAGK R N P L K N 0 0 2 2 0 1 0 2 0 1 1 1 0 0 1 1 0 0 1 0 0 0 13 0 1419.663 O60934;A0A0C4DG07 O60934 671 683 NBN Nibrin yes no 2 1.7862E-06 111.06 By MS/MS 2 0.87142 0.94957 5.6456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87142 0.94957 5.6456 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24951000 14326000 10625000 0 0 0 0 0 0 24951000 14326000 10625000 0 0 0 0 0 0 0 0 0 26229 1641 27627 139559;139560 140407;140408 140408 2 NPSLPSKLDPFESSDPFSSSSVSSK KQTKNDPFTSDPFTKNPSLPSKLDPFESSD FESSDPFSSSSVSSKGSDPFGTLDPFGSGS K N P S K G 0 0 1 2 0 0 1 0 0 0 2 2 0 2 4 10 0 0 0 1 0 0 25 1 2625.2446 M0R165;Q9UBC2;M0R3I1 M0R165 697 721 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 3 0.027259 13.407 By MS/MS By matching 1 1 0.56165 0.61796 15.903 2 Median 0.52183 0.55224 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60451 0.69151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3361700 1984400 1377400 1755300 1068800 686490 0 0 0 1606400 915550 690860 0 0 0 0 0 0 0 0 0 26230 1431 27628 139561;139562 140409 140409 1 NPSTNFQEPVQPLTQQQVAQMQLK PTYPSGQIGFMLCSKNPSTNFQEPVQPLTQ VQPLTQQQVAQMQLKYYNSDVHRAAFVLPE K N P L K Y 1 0 2 0 0 7 1 0 0 0 2 1 1 1 3 1 2 0 0 2 0 0 24 0 2753.3807 P19623;K7EL89 P19623 254 277 SRM Spermidine synthase yes no 3 2.2019E-12 59.539 By MS/MS By matching 1 1 0.74419 0.65335 1.9893 2 Median 0.72962 0.6626 NaN 1 0 Median 0.75905 0.64422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23521000 13394000 10127000 22923000 13098000 9825000 598560 296280 302280 0 0 0 0 0 0 0 0 0 0 0 0 26231 2068 27629 139563;139564 140410;140411 140411 2 NPSTSLGPTLEPEEVVNR TTCLCPNFVNTGFIKNPSTSLGPTLEPEEV TSLGPTLEPEEVVNRLMHGILTEQKMIFIP K N P N R L 0 1 2 0 0 0 3 1 0 0 2 0 0 0 3 2 2 0 0 2 0 0 18 0 1937.9694 D6RCD0;Q8NBQ5 D6RCD0 184 201 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 2.441E-06 81.494 By MS/MS By matching By matching 1 2 1 0.83564 0.72088 37.153 4 Median 0.89581 0.87894 NaN 1 0 Median 0.83564 0.72088 1.0026 2 0 Median 0.36904 0.37521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13254000 7306000 5948200 10560000 5642100 4918100 1452600 791740 660890 1241400 872160 369210 0 0 0 0 0 0 0 0 0 26232 819 27630 139565;139566;139567;139568 140412 140412 1 NPSTVEAFDLAQSNSEHSR WDLDFYTKRFQELQRNPSTVEAFDLAQSNS VEAFDLAQSNSEHSRHWFFKGQLHVDGQKL R N P S R H 2 1 2 1 0 1 2 0 1 0 1 0 0 1 1 4 1 0 0 1 0 0 19 0 2087.9508 O15067 O15067 213 231 PFAS Phosphoribosylformylglycinamidine synthase yes yes 3 2.7936E-21 163.35 By MS/MS By MS/MS 2 1 0.87108 0.83546 10.858 3 Median 0.91496 0.86915 5.5895 2 0 Median 0.87108 0.72949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69696000 33965000 35732000 60530000 29058000 31472000 9166000 4906500 4259500 0 0 0 0 0 0 0 0 0 0 0 0 26233 1518 27631 139569;139570;139571 140413;140414;140415;140416;140417;140418 140413 6 NPSVNWK IFSGYVNSMLQEYAKNPSVNWKHKDAAIYL SMLQEYAKNPSVNWKHKDAAIYLVTSLASK K N P W K H 0 0 2 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 7 0 843.4239 P55060 P55060 419 425 CSE1L Exportin-2 yes yes 2 0.024489 55.441 By MS/MS By MS/MS 1 1 1.1101 1.0376 10.126 2 Median 1.1028 1.1146 NaN 1 0 Median 1.1174 0.96593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4612600 2077700 2534900 1101300 567630 533630 3511300 1510100 2001200 0 0 0 0 0 0 0 0 0 0 0 0 26234 2493 27632 139572;139573 140419;140420 140420 2 NPTFLDYVRPR FYSQEWYARQHCPLKNPTFLDYVRPRSWTC CPLKNPTFLDYVRPRSWTCRYVF_______ K N P P R S 0 2 1 1 0 0 0 0 0 0 1 0 0 1 2 0 1 0 1 1 0 0 11 1 1376.7201 P35610 P35610 532 542 SOAT1 Sterol O-acyltransferase 1 yes yes 2 0.0023826 81.95 By MS/MS By matching By matching 1 2 2 0.77377 0.85037 23.92 5 Median 0.74919 0.81414 NaN 1 0 Median 0.87074 0.78616 44.133 2 0 Median 0.82718 0.91351 10.129 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17064000 8948900 8114900 6037500 3504000 2533500 2410100 1104300 1305800 8616200 4340600 4275600 0 0 0 0 0 0 0 0 0 26235 2247 27633 139574;139575;139576;139577;139578 140421 140421 0 NPTIVNFPITNVDLR FCIKRFTKNNFFVEKNPTIVNFPITNVDLR NPTIVNFPITNVDLREYLSEEVQAVHKNTT K N P L R E 0 1 3 1 0 0 0 0 0 2 1 0 0 1 2 0 2 0 0 2 0 0 15 0 1711.9257 B9A018;Q53GS9;A0A087X1B2 B9A018 467 481 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 9.0983E-14 174.24 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 0.84565 0.85718 16.474 6 Median 0.97196 0.94739 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6795 0.68793 0.46565 2 0 Median 1.1269 0.94221 NaN 1 0 Median 0.84565 0.8744 16.189 2 0 Median NaN NaN NaN 0 0 Median 66937000 37278000 29659000 4692300 2304400 2387900 0 0 0 57773000 32736000 25037000 2795400 1208200 1587200 1675800 1029500 646300 0 0 0 26236 654 27634 139579;139580;139581;139582;139583;139584 140422;140423;140424;140425;140426;140427;140428;140429 140425 8 NPVHNGHALLMQDTHK FKDMNADAVFAFQLRNPVHNGHALLMQDTH PVHNGHALLMQDTHKQLLERGYRRPVLLLH R N P H K Q 1 0 2 1 0 1 0 1 3 0 2 1 1 0 1 0 1 0 0 1 0 0 16 0 1810.8897 O43252 O43252 422 437 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 4 0.001552 32.341 By MS/MS By matching 1 1 0.95473 0.86763 12.32 2 Median 0.82842 0.79524 NaN 1 0 Median 1.1003 0.9466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7257000 4025900 3231100 4218700 2280200 1938500 3038400 1745700 1292600 0 0 0 0 0 0 0 0 0 0 0 0 26237 1561 27635 139585;139586 140430 140430 1 NPVHNGHALLMQDTR CKEMNADAVFAFQLRNPVHNGHALLMQDTR NPVHNGHALLMQDTRRRLLERGYKHPVLLL R N P T R R 1 1 2 1 0 1 0 1 2 0 2 0 1 0 1 0 1 0 0 1 0 0 15 0 1701.8369 O95340 O95340 412 426 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 8.8244E-05 65.172 By MS/MS By MS/MS 1 1 1.1069 1.0031 5.0656 2 Median 1.0954 1.0397 NaN 1 0 Median 1.1185 0.96782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21879000 10332000 11547000 12419000 5725400 6693400 9459900 4606100 4853800 0 0 0 0 0 0 0 0 0 0 0 0 26238 1765 27636 139587;139588 140431;140432;140433 140433 3 NPVKFEGGDRDLEHLSK EGFPTIYFAPSGDKKNPVKFEGGDRDLEHL VKFEGGDRDLEHLSKFIEEHATKLSRTKEE K N P S K F 0 1 1 2 0 0 2 2 1 0 2 2 0 1 1 1 0 0 0 1 0 0 17 2 1939.9752 P13667;A0A499FI48 P13667 613 629 PDIA4 Protein disulfide-isomerase A4 yes no 4 0.0018121 28.58 By MS/MS 2 0.65924 0.71986 40.75 2 Median 0.65924 0.71986 40.75 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14177000 7851700 6325700 14177000 7851700 6325700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26239 1993 27637 139589;139590 140434;140435 140435 2 NPVLQQDAHSSVTITPQR RVVLGANGTYSCLVRNPVLQQDAHSSVTIT LQQDAHSSVTITPQRSPTGAVEVQVPEDPV R N P Q R S 1 1 1 1 0 3 0 0 1 1 1 0 0 0 2 2 2 0 0 2 0 0 18 0 1990.0232 A0A0C4DGH0;Q5ZPR3 A0A0C4DGH0 78 95 CD276 CD276 antigen yes no 2;3 8.6185E-09 95.767 By MS/MS By MS/MS 3 1 0.7051 0.66684 13.713 3 Median 0.67513 0.64563 4.5698 2 0 Median 0.93935 0.81326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35296000 22149000 13147000 30444000 19792000 10653000 4852000 2357900 2494100 0 0 0 0 0 0 0 0 0 0 0 0 26240 247 27638 139591;139592;139593;139594 140436;140437;140438;140439;140440;140441 140438 6 NPVLVSQYEK IRHSEQTLKTALISKNPVLVSQYEKLNAGE ALISKNPVLVSQYEKLNAGEQRLMNEAFQP K N P E K L 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 1 0 0 1 2 0 0 10 0 1175.6186 J3KSH1;J3KS38;J3KRS2;J3QLK6;J3KRD0;Q86W34 J3KSH1 19 28 AMZ2 Archaemetzincin-2 yes no 2 0.0020106 61.78 By MS/MS 1 0.89618 0.94231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89618 0.94231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5985900 3035100 2950800 0 0 0 0 0 0 5985900 3035100 2950800 0 0 0 0 0 0 0 0 0 26241 1326 27639 139595 140442;140443 140443 2 NPVMELNEK DATAEQGPILTKHGKNPVMELNEKRRGLKY LTKHGKNPVMELNEKRRGLKYELISETGGS K N P E K R 0 0 2 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 9 0 1072.5223 Q12906;Q96SI9 Q12906 527 535 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2 0.00042412 129.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 3 3 0.98894 0.91109 30.161 14 Median 1.1693 1.0774 NaN 1 0 Median 1.8551 1.6612 67.759 2 0 Median 0.85659 0.8885 7.7158 2 0 Median 0.96907 0.8411 12.446 3 1 Median 0.9161 0.88465 5.5174 3 0 Median 1.0631 0.86382 6.9734 3 1 Median 163540000 79838000 83700000 6988800 3014900 3973800 13288000 5591300 7696300 53795000 27615000 26180000 11291000 4932800 6358700 59185000 30544000 28641000 18990000 8140200 10850000 26242 2769;3734 27640;27641 139596;139597;139598;139599;139600;139601;139602;139603;139604;139605;139606;139607;139608;139609;139610 140444;140445;140446;140447;140448;140449;140450;140451;140452;140453;140454;140455;140456;140457;140458;140459;140460;140461;140462;140463;140464;140465;140466 140448 1489 23 NPVMELNEKR DATAEQGPILTKHGKNPVMELNEKRRGLKY TKHGKNPVMELNEKRRGLKYELISETGGSH K N P K R R 0 1 2 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 10 1 1228.6234 Q12906;Q96SI9 Q12906 527 536 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 3 0.00028407 67.726 By MS/MS By MS/MS By matching 1 1 1 0.7419 0.81815 38.335 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89498 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7419 0.81815 NaN 1 0 Median 0.5495 0.48282 NaN 1 0 Median 6333700 3235100 3098700 0 0 0 0 0 0 2175000 1081700 1093300 0 0 0 3553900 1803100 1750800 604820 350230 254590 26243 2769;3734 27642 139611;139612;139613 140467;140468;140469 140469 3 NPVTIFSLATNEMWR GRVGQDPVLRQVEGKNPVTIFSLATNEMWR NPVTIFSLATNEMWRSGDSEVYQLGDVSQK K N P W R S 1 1 2 0 0 0 1 0 0 1 1 0 1 1 1 1 2 1 0 1 0 0 15 0 1777.8821 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 52 66 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.00024206 77.744 By matching By MS/MS By MS/MS 1 2 4 1.0733 0.97209 15.511 7 Median NaN NaN NaN 0 0 Median 1.3459 1.1349 NaN 1 0 Median 0.97484 0.98874 0.33163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1517 0.90371 15.759 4 0 Median 18874000 9171100 9702700 0 0 0 98161 47225 50936 13471000 6747500 6723900 0 0 0 0 0 0 5304300 2376400 2927900 26244 2713 27643;27644 139614;139615;139616;139617;139618;139619;139620 140470;140471;140472;140473;140474 140471 1402 5 NPVWYQALTHGLNEEQR EYQIFKAIFQTIQNRNPVWYQALTHGLNEE VWYQALTHGLNEEQRKQLQDIATLADQRRA R N P Q R K 1 1 2 0 0 2 2 1 1 0 2 0 0 0 1 0 1 1 1 1 0 0 17 0 2053.997 O95373 O95373 973 989 IPO7 Importin-7 yes yes 3 5.5677E-05 47.568 By MS/MS By matching By MS/MS 1 1 1 0.96571 0.93255 20.673 3 Median 0.96571 0.93255 NaN 1 0 Median 0.95686 0.80939 NaN 1 0 Median 1.1112 1.2162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13758000 6952000 6806100 7064900 3696900 3368000 4399700 2088700 2311000 2293400 1166400 1127100 0 0 0 0 0 0 0 0 0 26245 1768 27645 139621;139622;139623 140475;140476;140477;140478 140476 4 NPVWYQALTHGLNEEQRK EYQIFKAIFQTIQNRNPVWYQALTHGLNEE WYQALTHGLNEEQRKQLQDIATLADQRRAA R N P R K Q 1 1 2 0 0 2 2 1 1 0 2 1 0 0 1 0 1 1 1 1 0 0 18 1 2182.0919 O95373 O95373 973 990 IPO7 Importin-7 yes yes 3;4 1.1126E-06 76.713 By MS/MS By matching 2 2 1.0279 1.0312 5.1982 4 Median 0.9899 1.0312 5.9375 2 0 Median 1.082 1.0345 6.7608 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24415000 11185000 13230000 21102000 9691400 11411000 3312900 1493900 1819000 0 0 0 0 0 0 0 0 0 0 0 0 26246 1768 27646 139624;139625;139626;139627 140479;140480;140481;140482 140480 4 NPWGEVEWTGR EVESNGSLQKLIRIRNPWGEVEWTGRWNDN IRIRNPWGEVEWTGRWNDNCPSWNTIDPEE R N P G R W 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 0 1 2 0 1 0 0 11 0 1329.6102 P17655 P17655 286 296 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.00013248 118.71 By MS/MS By MS/MS By matching 1 1 1 0.93445 0.88405 11.07 3 Plateau 0.93445 0.88405 NaN 1 0 Median 1.005 0.87003 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86987 0.72435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18675000 9337700 9336900 13511000 6409500 7101200 4966000 2834800 2131200 0 0 0 197970 93392 104570 0 0 0 0 0 0 26247 2045 27647 139628;139629;139630 140483;140484;140485;140486 140483 4 NPYTIFHQALK KYHAASAEEQATIERNPYTIFHQALKNCEP TIERNPYTIFHQALKNCEPMIGLVPILKGG R N P L K N 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 1 0 1 0 0 0 11 0 1330.7034 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 J3QLS3 169 179 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 0.0066787 63.227 By MS/MS 2 0.87728 0.81464 10.259 2 Median 0.87728 0.81464 10.259 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35622000 17982000 17640000 35622000 17982000 17640000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26248 1341 27648 139631;139632 140487;140488 140488 2 NPYYGGESASITPLEDLYKR GIMSVNGKKVLHMDRNPYYGGESASITPLE GESASITPLEDLYKRFKIPGSPPESMGRGR R N P K R F 1 1 1 1 0 0 2 2 0 1 2 1 0 0 2 2 1 0 3 0 0 0 20 1 2272.1012 P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90 P50395 36 55 GDI2 Rab GDP dissociation inhibitor beta yes no 3 0.00056288 45.257 By MS/MS 1 1.214 1.2107 NaN 1 Median 1.214 1.2107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9216400 4666600 4549800 9216400 4666600 4549800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26249 2411 27649 139633 140489 140489 1 NQAAIQGRPPYAASAEEVAK RTFGRGGRYYGRGYKNQAAIQGRPPYAASA QGRPPYAASAEEVAKELKSKSGESKSSAMS K N Q A K E 6 1 1 0 0 2 2 1 0 1 0 1 0 0 2 1 0 0 1 1 0 0 20 1 2070.0494 Q9NZB2;A0A0C4DG79;A0A494C0Y9 Q9NZB2 1010 1029 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 3 9.1285E-09 66.893 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.70236 0.69391 17.809 6 Median 0.61456 0.64076 NaN 1 0 Median 0.63086 0.59255 NaN 1 0 Median 0.84909 0.96226 NaN 1 1 Median 0.78196 0.75147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71988 0.6996 14.015 2 1 Median 45583000 25968000 19615000 17940000 10221000 7719200 4354800 2994800 1360000 9875600 5231900 4643600 9222500 5287300 3935300 0 0 0 4189800 2233000 1956800 26250 4186 27650 139634;139635;139636;139637;139638;139639 140490;140491;140492;140493;140494;140495;140496 140494 7 NQAETIALEK KALKEKIREYEQTLKNQAETIALEKEQKLQ EQTLKNQAETIALEKEQKLQNDFAEKERKL K N Q E K E 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1115.5823 Q13948;A0A2R8Y8D0;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 166 175 CUX1 Protein CASP no no 2 0.0039125 55.064 By MS/MS By MS/MS By matching 1 1 1 1.118 1.2454 20.056 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.118 1.2454 NaN 1 0 Median 1.0316 0.9375 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95182 0.8455 NaN 1 0 Median 7102800 3091500 4011400 0 0 0 0 0 0 4748800 1982500 2766300 1419600 634120 785520 0 0 0 934350 474810 459540 26251 388;2847 27651 139640;139641;139642 140497;140498;140499;140500 140500 4 NQAFIEMNTEEAANTMVNYYTSVTPVLR LPFGKVTNLLMLKGKNQAFIEMNTEEAANT NTMVNYYTSVTPVLRGQPIYIQFSNHKELK K N Q L R G 3 1 4 0 0 1 3 0 0 1 1 0 2 1 1 1 4 0 2 3 0 0 28 0 3205.506 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59 A0A0U1RRM4 95 122 PTBP1 Polypyrimidine tract-binding protein 1 yes no 3 2.3144E-14 60.104 By MS/MS 3 0.77797 0.80531 4.2216 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77797 0.80531 4.2216 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11600000 5753700 5846200 0 0 0 0 0 0 11600000 5753700 5846200 0 0 0 0 0 0 0 0 0 26252 312 27652;27653 139643;139644;139645 140501;140502;140503 140502 151;152 3 NQALNIAWQK KSKILTTIEDLDQKKNQALNIAWQKVNKDF LDQKKNQALNIAWQKVNKDFGSIFSTLLPG K N Q Q K V 2 0 2 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1184.6302 O95347;A0A0C4DGE5 O95347 1027 1036 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.00066706 96.253 By matching By matching By MS/MS By MS/MS By matching 1 2 1 1 1 8.4886 9.0158 112.54 6 Linear 1.4521 1.4127 NaN 1 0 Median 4.1642 4.0592 212.86 2 0 Median 2.6392 2.8189 NaN 1 0 Median 1.4161 1.2266 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2981 1.1154 NaN 1 0 Median 52388000 11339000 41048000 6327500 3506400 2821100 27676000 3149900 24527000 11950000 2979300 8970900 5684900 1436200 4248600 0 0 0 748840 267620 481220 26253 1766 27654 139646;139647;139648;139649;139650;139651 140504;140505 140504 2 NQALNTDNYGHDLASVQALQR FHRDADETKEWIEEKNQALNTDNYGHDLAS DNYGHDLASVQALQRKHEGFERDLAALGDK K N Q Q R K 3 1 3 2 0 3 0 1 1 0 3 0 0 0 0 1 1 0 1 1 0 0 21 0 2327.1254 A0A0D9SF54;Q13813 Q13813 1253 1273 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 6.9654E-56 202.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 6 3 2 1 1.0401 0.98064 30.67 18 Median 1.4719 1.4445 21.908 4 1 Median 1.2647 1.0428 2.4544 2 0 Median 0.72884 0.79556 27.524 6 3 Median 1.0452 0.91884 1.506 3 0 Plateau 0.97798 1.0111 5.2217 2 0 Median 1.1206 0.93422 NaN 1 0 Median 472060000 229370000 242690000 85712000 34458000 51254000 44536000 19179000 25356000 294910000 153190000 141720000 16568000 7537700 9030800 29792000 14726000 15066000 540010 275070 264940 26254 264;2838 27655 139652;139653;139654;139655;139656;139657;139658;139659;139660;139661;139662;139663;139664;139665;139666;139667;139668;139669 140506;140507;140508;140509;140510;140511;140512;140513;140514;140515;140516;140517;140518;140519;140520;140521;140522;140523;140524;140525;140526;140527 140510 22 NQAVNFLR MEVARIHAENAIRQKNQAVNFLRMSARVDA ENAIRQKNQAVNFLRMSARVDAVAARVQTA K N Q L R M 1 1 2 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 960.51411 Q7LBR1 Q7LBR1 60 67 CHMP1B Charged multivesicular body protein 1b yes yes 2 0.0057366 74.191 By MS/MS By MS/MS 1 1 1.1344 1.0123 13.046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96084 0.92305 NaN 1 0 Median 1.3392 1.1101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17949000 9266300 8682900 0 0 0 0 0 0 14800000 7925100 6874500 3149600 1341200 1808400 0 0 0 0 0 0 26255 3231 27656 139670;139671 140528;140529;140530 140529 3 NQDATVYVGGLDEK ______________________________ RNQDATVYVGGLDEKVSEPLLWELFLQAGP R N Q E K V 1 0 1 2 0 1 1 2 0 0 1 1 0 0 0 0 1 0 1 2 0 0 14 0 1507.7155 Q15427 Q15427 10 23 SF3B4 Splicing factor 3B subunit 4 yes yes 2 2.4802E-08 147.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 3 1.1074 1.015 12.653 9 Median NaN NaN NaN 0 0 Median 1.3159 1.1165 NaN 1 0 Median 1.0298 0.98368 NaN 1 0 Median 1.2051 1.0605 6.2055 2 1 Median 1.0155 1.0302 3.1932 2 0 Median 1.1074 0.92209 22.267 3 1 Median 152800000 70400000 82401000 0 0 0 8444900 3823600 4621300 54450000 26462000 27988000 38427000 17182000 21245000 43155000 18901000 24254000 8323800 4031300 4292500 26256 2952 27657 139672;139673;139674;139675;139676;139677;139678;139679;139680 140531;140532;140533;140534;140535;140536;140537;140538;140539;140540;140541;140542;140543;140544 140533 14 NQDEESQEAPELLK TKEALTRKQQKCRRKNQDEESQEAPELLKR KNQDEESQEAPELLKRPKEYTVRFTFPDPP K N Q L K R 1 0 1 1 0 2 4 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1628.753 Q8NE71;H0YGW7 Q8NE71 590 603 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 1.5424E-07 163.78 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.92389 0.82121 11.819 5 Median 0.82847 0.80518 NaN 1 0 Median 1.0433 0.91808 NaN 1 0 Median 0.92389 1.0059 NaN 1 0 Median 0.89298 0.78187 6.943 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44089000 21388000 22701000 6867900 3289100 3578800 1799100 805220 993830 13503000 6361300 7141500 21919000 10933000 10986000 0 0 0 0 0 0 26257 3427 27658 139681;139682;139683;139684;139685 140545;140546;140547;140548;140549;140550;140551 140548 7 NQDEQEIPFR GLRSKEKKKVNCKPKNQDEQEIPFRLREIM NCKPKNQDEQEIPFRLREIMRSRQEMKNPI K N Q F R L 0 1 1 1 0 2 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 10 0 1274.5891 I3L0U5;Q6PK04 I3L0U5 57 66 CCDC137 Coiled-coil domain-containing protein 137 yes no 2 0.0014822 83.005 By MS/MS By MS/MS 1 1 1.0733 1.1045 7.6775 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0572 1.0462 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0896 1.1662 NaN 1 1 Median NaN NaN NaN 0 0 Median 7398600 4043100 3355500 0 0 0 0 0 0 4489100 2712000 1777100 0 0 0 2909400 1331100 1578400 0 0 0 26258 1274 27659 139686;139687 140552;140553 140552 2 NQDETEDTELQGMNEYLSSFK VIHYDDKAIERLLDRNQDETEDTELQGMNE DTELQGMNEYLSSFKVAQYVVREEEMGEEE R N Q F K V 0 0 2 2 0 2 4 1 0 0 2 1 1 1 0 2 2 0 1 0 0 0 21 0 2477.054 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9;A0A2R8YE38 Q14839 1261 1281 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.043358 19.211 By MS/MS 4 0.86605 0.94998 13.187 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86605 0.94998 13.187 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7121500 3379100 3742400 0 0 0 0 0 0 7121500 3379100 3742400 0 0 0 0 0 0 0 0 0 26259 246 27660 139688;139689;139690;139691 140554;140555 140554 2 NQDFMNVYYQIR QDVIRISRWLVEYGRNQDFMNVYYQIRSSQ YGRNQDFMNVYYQIRSSQLDRSIKGLKEHF R N Q I R S 0 1 2 1 0 2 0 0 0 1 0 0 1 1 0 0 0 0 2 1 0 0 12 0 1589.7297 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07;C9JKC2 A0A0A0MSB8 212 223 EXOC7 Exocyst complex component 7 yes no 2 0.00025729 83.948 By MS/MS By matching 1 1 0.98918 0.93156 3.2647 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85502 0.9103 NaN 1 0 Median 1.1444 0.95332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091600 1406700 1684900 0 0 0 0 0 0 2890400 1312800 1577500 201260 93904 107360 0 0 0 0 0 0 26260 179 27661 139692;139693 140556;140557 140556 2 NQDLAPNSAEQASILSLVTK PAPDETSFSEALLKRNQDLAPNSAEQASIL PNSAEQASILSLVTKINNVIDNLIVAPGTF R N Q T K I 3 0 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 20 0 2098.0906 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 23 42 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 2.0822E-18 128.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 8 1 10 10 0.90173 0.85168 44.706 32 Median 1.0321 0.95456 NaN 1 0 Median 1.0407 0.89624 2.5655 2 0 Median 0.8391 0.82974 6.6247 8 0 Median 0.87595 0.72626 NaN 1 0 Median 0.88318 0.87497 11.801 10 1 Median 1.0041 0.8437 78.368 10 0 Median 293300000 150960000 142330000 14153000 6556700 7596500 5780000 2720400 3059600 153170000 79369000 73801000 64813 31472 33341 111770000 58565000 53209000 8354200 3721100 4633200 26261 609 27662 139694;139695;139696;139697;139698;139699;139700;139701;139702;139703;139704;139705;139706;139707;139708;139709;139710;139711;139712;139713;139714;139715;139716;139717;139718;139719;139720;139721;139722;139723;139724;139725 140558;140559;140560;140561;140562;140563;140564;140565;140566;140567;140568;140569;140570;140571;140572;140573;140574;140575;140576;140577;140578;140579;140580;140581;140582;140583;140584;140585;140586;140587 140564 30 NQDLEFER SIQVDFNRRADSLQKNQDLEFERNRERFEF RADSLQKNQDLEFERNRERFEFLKWGSQAF K N Q E R N 0 1 1 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1049.4778 P21399 P21399 142 149 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.019541 47.082 By MS/MS 1 1.3557 1.1861 NaN 1 Median NaN NaN NaN 0 0 Median 1.3557 1.1861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1690200 696150 994000 0 0 0 1690200 696150 994000 0 0 0 0 0 0 0 0 0 0 0 0 26262 2090 27663 139726 140588;140589 140588 2 NQDNLQGWNK ANAQKNKFLIDGFPRNQDNLQGWNKTMDGK DGFPRNQDNLQGWNKTMDGKADVSFVLFFD R N Q N K T 0 0 3 1 0 2 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1215.5632 P30085;Q5T0D2;A0A494BXC7 P30085 97 106 CMPK1 UMP-CMP kinase yes no 2 0.00049901 91.318 By matching By MS/MS By matching 1 1 1 0.68471 0.73106 10.161 3 Median 0.66172 0.62612 NaN 1 0 Median 0.86449 0.73106 NaN 1 0 Median 0.68471 0.75814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13647000 7675500 5971300 7339700 4340900 2998700 2648400 1397100 1251300 3658800 1937500 1721300 0 0 0 0 0 0 0 0 0 26263 2187 27664 139727;139728;139729 140590 140590 1 NQEEYKEVNFTSELR DFHFRTDERIKQHPKNQEEYKEVNFTSELR NQEEYKEVNFTSELRKHPSSPARVTKGCTI K N Q L R K 0 1 2 0 0 1 4 0 0 0 1 1 0 1 0 1 1 0 1 1 0 0 15 1 1884.8854 Q9ULW0 Q9ULW0 274 288 TPX2 Targeting protein for Xklp2 yes yes 3 0.00012004 63.128 By MS/MS By MS/MS 1 1 1.374 1.5339 4.3415 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3955 1.5818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3527 1.4876 NaN 1 0 Median NaN NaN NaN 0 0 Median 17682000 7347000 10335000 0 0 0 0 0 0 11635000 4646600 6988600 0 0 0 6047000 2700400 3346600 0 0 0 26264 4330 27665 139730;139731 140591;140592;140593 140592 3 NQEILDDTAK DEAIKYKDKIKTLEKNQEILDDTAKNLRVM KTLEKNQEILDDTAKNLRVMLESEREQNVK K N Q A K N 1 0 1 2 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1145.5564 Q5JRA6;A0A0A0MRH6 Q5JRA6 1275 1284 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.019154 53.327 By MS/MS 1 0.92527 0.80309 NaN 1 Median NaN NaN NaN 0 0 Median 0.92527 0.80309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 775060 351560 423500 0 0 0 775060 351560 423500 0 0 0 0 0 0 0 0 0 0 0 0 26265 3049 27666 139732 140594 140594 1 NQELEVVR EKQEHVKLQKLMEKKNQELEVVRQQRERLQ QKLMEKKNQELEVVRQQRERLQEELSQAES K N Q V R Q 0 1 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 985.51926 E7EX90;Q14203;Q6AWB1 E7EX90 382 389 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.0035231 91.041 By MS/MS By MS/MS 2 1 1.2126 1.017 27.34 3 Median 1.0825 1.0814 38.339 2 1 Median 1.2126 1.017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12947000 5927100 7020300 5066800 2624800 2442000 7880600 3302300 4578300 0 0 0 0 0 0 0 0 0 0 0 0 26266 906 27667 139733;139734;139735 140595;140596;140597 140597 3 NQEQLAAELAEFTAK EAKSAIAKQAADQMKNQEQLAAELAEFTAK NQEQLAAELAEFTAKIALLEEAKKKKEEEA K N Q A K I 4 0 1 0 0 2 3 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 15 0 1661.8261 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 413 427 RDX Radixin yes no 2;3 5.8024E-10 113.65 By MS/MS By MS/MS By MS/MS By matching 3 4 2 3 1.0863 0.99084 30.57 12 Median 0.74708 0.67555 21.086 3 2 Median 1.7508 1.51 24.433 4 3 Median 0.84167 0.86363 34.786 2 0 Median 1.1664 1.014 4.3096 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78843000 40275000 38569000 28290000 15792000 12497000 17352000 6500500 10851000 31617000 17275000 14342000 1585000 706530 878450 0 0 0 0 0 0 26267 2235 27668 139736;139737;139738;139739;139740;139741;139742;139743;139744;139745;139746;139747 140598;140599;140600;140601;140602;140603;140604;140605 140604 8 NQEQMKPLEEKQEEER ERIKDYLLMEEEFIRNQEQMKPLEEKQEEE QEQMKPLEEKQEEERSKVDDLRGTPMSVGT R N Q E R S 0 1 1 0 0 3 6 0 0 0 1 2 1 0 1 0 0 0 0 0 0 0 16 2 2043.9531 P62191 P62191 81 96 PSMC1 26S protease regulatory subunit 4 yes yes 3;4 1.943E-05 78.285 By MS/MS By MS/MS 2 2 0.85699 0.91703 10.147 4 Median 0.77356 0.86439 5.6917 2 0 Median 0.97096 0.99495 8.8656 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16839000 8596200 8242600 9136600 4882200 4254400 7702200 3714000 3988200 0 0 0 0 0 0 0 0 0 0 0 0 26268 2571 27669 139748;139749;139750;139751 140606;140607;140608;140609;140610;140611;140612 140606 7 NQFETEINITK SKVRNNYDEEIISLKNQFETEINITKTTIH ISLKNQFETEINITKTTIHQLTMQKEEDTS K N Q T K T 0 0 2 0 0 1 2 0 0 2 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1335.667 P15924 P15924 1364 1374 DSP Desmoplakin yes yes 2 0.00098502 84.17 By MS/MS By MS/MS 1 2 1.2104 1.0636 14.145 3 Median 0.91601 0.87938 NaN 1 1 Median 1.2519 1.1105 6.0964 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7054000 3385000 3669000 5265000 2633700 2631400 1788900 751300 1037600 0 0 0 0 0 0 0 0 0 0 0 0 26269 2021 27670 139752;139753;139754 140613;140614 140613 2 NQFLDIWQLR GTILVGQLELIIKHKNQFLDIWQLREKSLS IIKHKNQFLDIWQLREKSLSPQDEQCAVEE K N Q L R E 0 1 1 1 0 2 0 0 0 1 2 0 0 1 0 0 0 1 0 0 0 0 10 0 1331.6986 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1163 1172 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.025052 50.04 By MS/MS 1 1.4153 1.2032 NaN 1 Median NaN NaN NaN 0 0 Median 1.4153 1.2032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1225300 460260 765030 0 0 0 1225300 460260 765030 0 0 0 0 0 0 0 0 0 0 0 0 26270 189 27671 139755 140615 140615 1 NQGDEEGTEIDTLQFR GLIPIHADPRLFEYRNQGDEEGTEIDTLQF QGDEEGTEIDTLQFRLQVRCTRNPHAAKDS R N Q F R L 0 1 1 2 0 2 3 2 0 1 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1850.8282 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8YEY5;D6RDJ3 O15160 126 141 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 2.5342E-59 236.57 By matching By matching By MS/MS By matching 1 1 1 1 0.84486 0.83328 22.156 4 Median 0.98814 0.98312 NaN 1 0 Median 0.72991 0.62496 NaN 1 0 Median 0.87654 0.9614 NaN 1 0 Median 0.81433 0.72224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48428000 24528000 23900000 3835700 1943600 1892100 1967000 1167700 799290 41616000 20871000 20745000 1009600 546060 463540 0 0 0 0 0 0 26271 1528 27672 139756;139757;139758;139759 140616;140617;140618 140617 3 NQGGGLSSSGAGEGQGPK KPQKQNDGQRKDPSKNQGGGLSSSGAGEGQ GGLSSSGAGEGQGPKKQTRLGLEAKKEENL K N Q P K K 1 0 1 0 0 2 1 7 0 0 1 1 0 0 1 3 0 0 0 0 0 0 18 0 1586.7285 P07814 P07814 992 1009 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.0039894 28.806 By matching By MS/MS 1 1 1.0133 0.93202 5.5325 2 Median 0.91786 0.89626 NaN 1 0 Median 1.1186 0.96921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 750990 397370 353620 242190 135950 106240 508800 261420 247380 0 0 0 0 0 0 0 0 0 0 0 0 26272 1892 27673 139760;139761 140619;140620 140619 2 NQGGSSWEAPYSR FESSYRNSLDSFGGRNQGGSSWEAPYSRSK GRNQGGSSWEAPYSRSKLRPGFMEDRGREN R N Q S R S 1 1 1 0 0 1 1 2 0 0 0 0 0 0 1 3 0 1 1 0 0 0 13 0 1437.6273 Q5BKZ1 Q5BKZ1 126 138 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 8.3164E-07 101.93 By matching By matching By MS/MS By MS/MS 1 1 3 1 0.8748 0.87822 10.533 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81128 0.85269 NaN 1 0 Median 0.88743 0.74496 NaN 1 0 Median 0.91304 0.88874 3.4018 3 0 Plateau 1.2604 1.0261 NaN 1 0 Median 25585000 13825000 11760000 0 0 0 0 0 0 4517200 2393700 2123500 709120 346710 362400 18934000 10435000 8499300 1424300 649360 774990 26273 3042 27674 139762;139763;139764;139765;139766;139767 140621;140622;140623 140622 3 NQGGYGGSSSSSSYGSGR SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG GYGGSSSSSSYGSGRRF_____________ R N Q G R R 0 1 1 0 0 1 0 6 0 0 0 0 0 0 0 7 0 0 2 0 0 0 18 0 1693.6928 H0YH80;P09651;F8W6I7;A0A2R8Y4L2 P09651 353 370 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 2 3.2499E-14 131.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 4 5 1.1663 1.0125 10.268 17 Median 1.1771 1.1733 10.803 2 0 Median 1.2391 1.0508 2.614 2 0 Median 0.97798 0.98006 6.5876 2 0 Median 1.1907 1.0014 4.4964 2 0 Median 0.92491 0.94147 13.458 4 0 Median 1.2115 1.0009 5.3412 5 0 Median 76283000 36246000 40037000 1777900 718810 1059100 3780000 1745700 2034300 14640000 7186900 7453000 11936000 5502900 6433200 26692000 13199000 13493000 17458000 7892900 9564700 26274 1919;365;1183 27675 139768;139769;139770;139771;139772;139773;139774;139775;139776;139777;139778;139779;139780;139781;139782;139783;139784 140624;140625;140626;140627;140628;140629;140630;140631;140632;140633;140634;140635;140636;140637;140638;140639;140640;140641;140642;140643;140644;140645;140646;140647 140640 24 NQGIEEALK LISAMKIFVTTKNSKNQGIEEALKNRNFTV TTKNSKNQGIEEALKNRNFTVEKMSAEINE K N Q L K N 1 0 1 0 0 1 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1000.5189 P18206 P18206 220 228 VCL Vinculin yes yes 2 0.0027536 83.206 By MS/MS By MS/MS 1 2 0.98039 0.82371 31.394 3 Plateau 0.97671 0.95131 NaN 1 0 Median 0.76577 0.65536 32.332 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45037000 22240000 22797000 5704200 2823800 2880400 39333000 19417000 19917000 0 0 0 0 0 0 0 0 0 0 0 0 26275 2057 27676 139785;139786;139787 140648;140649 140648 2 NQHFDGFVVEVWNQLLSQK DEIEELSKTVVQVAKNQHFDGFVVEVWNQL DGFVVEVWNQLLSQKRVGLIHMLTHLAEAL K N Q Q K R 0 0 2 1 0 3 1 1 1 0 2 1 0 2 0 1 0 1 0 3 0 0 19 0 2287.1386 Q9BWS9 Q9BWS9 183 201 CHID1 Chitinase domain-containing protein 1 yes yes 3 0.00063437 30.428 By MS/MS 1 1.0602 0.90738 NaN 1 Median NaN NaN NaN 0 0 Median 1.0602 0.90738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1415300 650590 764680 0 0 0 1415300 650590 764680 0 0 0 0 0 0 0 0 0 0 0 0 26276 3874 27677 139788 140650 140650 1 NQHFEVPFIAFYR PSTIQKIKEALGFMRNQHFEVPFIAFYRKE MRNQHFEVPFIAFYRKEYVEPELHINDLWR R N Q Y R K 1 1 1 0 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 13 0 1666.8256 Q7KZ85 Q7KZ85 368 380 SUPT6H Transcription elongation factor SPT6 yes yes 2;3 0.00099685 44.309 By MS/MS By MS/MS By matching 2 2 2 0.96634 0.9922 7.6007 4 Median 1.0012 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80699 0.89632 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0007 1.0275 6.7083 2 0 Median NaN NaN NaN 0 0 Median 4103600 1957500 2146100 1163700 510780 652940 0 0 0 2322900 1201000 1121900 0 0 0 616970 245710 371260 0 0 0 26277 3213 27678 139789;139790;139791;139792;139793;139794 140651;140652;140653;140654;140655 140654 5 NQHLVSQQKDPDTEEYR EKKLLEEDVKRWKARNQHLVSQQKDPDTEE HLVSQQKDPDTEEYRKLLSEKEVHTKRIQQ R N Q Y R K 0 1 1 2 0 3 2 0 1 0 1 1 0 0 1 1 1 0 1 1 0 0 17 1 2085.9716 P12270 P12270 1339 1355 TPR Nucleoprotein TPR yes yes 4 0.06116 9.5802 By MS/MS 2 0.63448 0.74229 0.40046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63448 0.74229 0.40046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1863800 964430 899400 0 0 0 0 0 0 1863800 964430 899400 0 0 0 0 0 0 0 0 0 26278 1978 27679 139795;139796 140656 140656 1 NQHLVSQQKDPDTEEYRK EKKLLEEDVKRWKARNQHLVSQQKDPDTEE LVSQQKDPDTEEYRKLLSEKEVHTKRIQQL R N Q R K L 0 1 1 2 0 3 2 0 1 0 1 2 0 0 1 1 1 0 1 1 0 0 18 2 2214.0665 P12270 P12270 1339 1356 TPR Nucleoprotein TPR yes yes 3;4;5 0.007672 24.041 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 5 5 0.81671 0.9926 19.981 17 Median 0.79983 0.86733 8.5088 4 0 Median 0.95135 1.0136 14.628 3 0 Plateau 0.742 0.98031 13.592 5 0 Median 1.1115 1.2441 17.03 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31705000 16886000 14819000 4993300 2824600 2168700 4601100 2171300 2429800 18968000 10494000 8474200 3143000 1396400 1746600 0 0 0 0 0 0 26279 1978 27680 139797;139798;139799;139800;139801;139802;139803;139804;139805;139806;139807;139808;139809;139810;139811;139812;139813;139814 140657;140658;140659;140660;140661;140662;140663;140664;140665;140666;140667;140668 140659 12 NQIALWDQLLEGR SVKVSEEVEKGRAVKNQIALWDQLLEGRIK VKNQIALWDQLLEGRIKLQKALLTTNQLPQ K N Q G R I 1 1 1 1 0 2 1 1 0 1 3 0 0 0 0 0 0 1 0 0 0 0 13 0 1554.8154 Q9NY61 Q9NY61 229 241 AATF Protein AATF yes yes 2 0.00027712 78.655 By MS/MS By MS/MS By matching 1 2 2 1.2662 1.2123 13.553 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94331 0.97233 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2725 1.3138 5.9635 2 0 Median 1.3175 1.1404 8.645 2 0 Median 5907600 2628200 3279400 0 0 0 0 0 0 626070 310950 315120 0 0 0 5016700 2194000 2822700 264830 123200 141630 26280 4172 27681 139815;139816;139817;139818;139819 140669;140670;140671;140672;140673 140672 5 NQIIFAVR WKEIETRHPGLADVRNQIIFAVRQEYVELG PGLADVRNQIIFAVRQEYVELGDQLLVLQP R N Q V R Q 1 1 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 8 0 959.55525 E9PKT9;O96033 E9PKT9 48 55 MOCS2 Molybdopterin synthase sulfur carrier subunit yes no 2 0.0043871 81.864 By MS/MS By MS/MS By matching 1 3 1 1.4529 1.2002 10.001 4 Median NaN NaN NaN 0 0 Median 1.5312 1.292 9.9584 3 0 Median NaN NaN NaN 0 0 Median 1.3191 1.1104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11892000 4907000 6985300 0 0 0 11616000 4752100 6864100 0 0 0 276050 154830 121220 0 0 0 0 0 0 26281 950 27682 139820;139821;139822;139823;139824 140674;140675;140676 140676 3 NQILNLTTDNANILLQIDNAR PRDYSKYYKTIDDLKNQILNLTTDNANILL TTDNANILLQIDNARLAADDFRLKYENEVA K N Q A R L 2 1 5 2 0 2 0 0 0 3 4 0 0 0 0 0 2 0 0 0 0 0 21 0 2366.2554 P13645;CON__P13645 P13645 208 228 KRT10 Keratin, type I cytoskeletal 10 yes no 2 0.00035645 49.929 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 441650 441650 0 0 0 0 441650 441650 0 0 0 0 0 0 0 0 0 0 0 0 0 + 26282 756 27683 139825 140677 140677 1 NQILQNEK ILHDLESRVEEEEERNQILQNEKKKMQAHI VEEEEERNQILQNEKKKMQAHIQDLEEQLD R N Q E K K 0 0 2 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 985.51926 P35580 P35580 938 945 MYH10 Myosin-10 yes yes 2 0.017745 77.058 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26283 2245 27684 139826 140678 140678 1 NQILSQQLQQMEAEHNTLR VVDLLQQELTAAEQRNQILSQQLQQMEAEH SQQLQQMEAEHNTLRNTVETEREESKILLE R N Q L R N 1 1 2 0 0 5 2 0 1 1 3 0 1 0 0 1 1 0 0 0 0 0 19 0 2280.1281 Q14789;E7EU81;H0Y867 Q14789 289 307 GOLGB1 Golgin subfamily B member 1 yes no 2;3 8.9591E-19 115.98 By MS/MS By matching 2 1 0.75512 0.94327 21.718 3 Plateau 0.84189 0.81926 19.933 2 0 Median 0.75512 0.61536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69378000 34187000 35190000 59897000 29115000 30782000 9480500 5071800 4408800 0 0 0 0 0 0 0 0 0 0 0 0 26284 2900 27685 139827;139828;139829 140679;140680;140681 140679 3 NQLAVLR YASKAHMNSVLMGMKNQLAVLRVAGSLQKS NSVLMGMKNQLAVLRVAGSLQKSTEVMKAM K N Q L R V 1 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 812.48684 Q9Y3E7;A0A140T963 Q9Y3E7 93 99 CHMP3 Charged multivesicular body protein 3 yes no 2 0.053155 51.572 By MS/MS 1 2.0741 1.7301 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0741 1.7301 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5129100 1492100 3637000 0 0 0 0 0 0 0 0 0 5129100 1492100 3637000 0 0 0 0 0 0 26285 4428 27686 139830 140682 140682 1 NQLELAAR AEMTRQLREREQRMRNQLELAARGPLRQTF EREQRMRNQLELAARGPLRQTFTHNPLLQP R N Q A R G 2 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 913.49813 A0A087X0L7;J3KNA0;Q15070 A0A087X0L7 387 394 OXA1L Mitochondrial inner membrane protein OXA1L yes no 2 0.0069954 68.915 By MS/MS 1 1.0603 0.91551 NaN 1 Median NaN NaN NaN 0 0 Median 1.0603 0.91551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3047400 1256500 1790900 0 0 0 3047400 1256500 1790900 0 0 0 0 0 0 0 0 0 0 0 0 26286 105 27687 139831 140683;140684 140683 2 NQLELLR RKFQPLFGDFAAEKKNQLELLRVMNSKKPQ GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K N Q L R V 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 884.50797 Q15050 Q15050 267 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.024489 55.441 By matching By MS/MS By matching 1 1 1 1.018 1.0222 71.054 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35348 0.33126 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.018 1.0222 NaN 1 0 Median 1.4358 1.2317 NaN 1 0 Median 10072000 5247600 4824000 0 0 0 0 0 0 1483900 1077200 406780 0 0 0 7204100 3542400 3661700 1383500 627990 755560 26287 2920 27688 139832;139833;139834 140685 140685 1 NQLESLQR DKDSLPKLKDLAFLKNQLESLQRRVEDEVN KDLAFLKNQLESLQRRVEDEVNSGVGQDGS K N Q Q R R 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 986.51451 L0R6Q1 L0R6Q1 19 26 SLC35A4 yes yes 2 0.0029868 102.72 By MS/MS 1 1.095 1.0654 NaN 1 Median 1.095 1.0654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7951700 3800600 4151100 7951700 3800600 4151100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26288 1404 27689 139835 140686;140687 140686 2 NQLKEDQDKVHMWEQTVK ENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ KEDQDKVHMWEQTVKKDENEIEKLKKEEQR K N Q V K K 0 0 1 2 0 3 2 0 1 0 1 3 1 0 0 0 1 1 0 2 0 0 18 2 2255.1005 Q14683;G8JLG1 Q14683 826 843 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3;4 0.0079769 44.998 By MS/MS By matching By matching 3 1 1 0.86881 1.044 14.593 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82162 0.9873 3.8633 3 2 Median 1.3438 1.3619 NaN 1 0 Median 1.0347 1.2112 NaN 1 0 Median NaN NaN NaN 0 0 Median 53386000 27299000 26087000 0 0 0 0 0 0 48381000 24844000 23537000 1505400 554330 951090 3500200 1900700 1599500 0 0 0 26289 2889 27690 139836;139837;139838;139839;139840 140688;140689;140690 140688 3 NQLSPQLLR DLVVVLVDVSDKWTRNQLSPQLLRCLTKYS SDKWTRNQLSPQLLRCLTKYSQIPSVLVMN R N Q L R C 0 1 1 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1067.6087 O75616;J3QSB2;J3QRV9 O75616 213 221 ERAL1 GTPase Era, mitochondrial yes no 2 0.013814 45.081 By matching By MS/MS By matching 1 1 1 0.87487 0.93474 11.146 3 Median NaN NaN NaN 0 0 Median 1.0941 0.94358 NaN 1 0 Median 0.86269 0.93474 NaN 1 0 Median 0.87487 0.7744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7902500 3922800 3979700 0 0 0 2807400 1234300 1573100 4261000 2262500 1998600 834010 425980 408040 0 0 0 0 0 0 26290 1687 27691 139841;139842;139843 140691 140691 1 NQLTAMSSVLAK PIGPHLQSMPSEQIRNQLTAMSSVLAKALE QIRNQLTAMSSVLAKALEVIKPAHILQEKE R N Q A K A 2 0 1 0 0 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 0 0 12 0 1261.67 Q14152 Q14152 521 532 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 3 1 2 2 1 1.2492 1.1713 22.646 12 Median 1.2369 1.1738 33.032 3 0 Median 1.3183 1.1453 1.6322 3 0 Median 1.1793 1.2672 NaN 1 0 Median 1.8242 1.5923 5.2951 2 0 Median 1.1229 1.1637 3.0275 2 1 Median 1.0961 0.91351 NaN 1 0 Median 181360000 80389000 100970000 128420000 57003000 71421000 35622000 15402000 20220000 7105600 3307900 3797700 1063100 466680 596430 8357300 3843900 4513500 785900 366180 419720 26291 2860 27692;27693 139844;139845;139846;139847;139848;139849;139850;139851;139852;139853;139854;139855;139856 140692;140693;140694;140695;140696;140697;140698;140699;140700;140701;140702;140703 140693 1544 12 NQLTSNPENTVFDAK AFTPEGERLIGDAAKNQLTSNPENTVFDAK NQLTSNPENTVFDAKRLIGRTWNDPSVQQD K N Q A K R 1 0 3 1 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 15 0 1676.8006 P11021 P11021 82 96 HSPA5 78 kDa glucose-regulated protein yes yes 2 1.6995E-09 152.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 1 1 1.061 0.94815 24.594 12 Median 1.0272 0.71745 20.335 4 0 Linear 1.1149 0.9267 19.065 3 0 Plateau 1.0137 0.99558 NaN 1 0 Median 1.2723 1.0904 1.8647 2 0 Median 1.2822 1.3141 NaN 1 1 Median 1.28 1.0619 NaN 1 0 Median 310250000 150830000 159420000 173420000 88193000 85224000 55718000 24697000 31022000 57231000 27727000 29504000 14589000 6208900 8380100 8177400 3537800 4639600 1119300 468750 650550 26292 1948 27694 139857;139858;139859;139860;139861;139862;139863;139864;139865;139866;139867;139868 140704;140705;140706;140707;140708;140709;140710;140711;140712;140713;140714;140715;140716 140707 13 NQLTSNPENTVFDAKR AFTPEGERLIGDAAKNQLTSNPENTVFDAK QLTSNPENTVFDAKRLIGRTWNDPSVQQDI K N Q K R L 1 1 3 1 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 16 1 1832.9017 P11021 P11021 82 97 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 7.0649E-15 180.18 By MS/MS By MS/MS By MS/MS 3 1 1 1.0014 1.0315 29.081 4 Median 1.0735 1.1072 25.821 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5338 1.3342 NaN 1 1 Median 167390000 80029000 87363000 165280000 79238000 86042000 0 0 0 0 0 0 0 0 0 0 0 0 2112100 790840 1321300 26293 1948 27695 139869;139870;139871;139872;139873 140717;140718;140719;140720;140721;140722;140723 140721 7 NQLVTPEPTSR SIVPIAPELQPSTSRNQLVTPEPTSRATRC STSRNQLVTPEPTSRATRCRTNRSSVKTPE R N Q S R A 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 1 2 0 0 1 0 0 11 0 1240.6412 Q14676 Q14676 1585 1595 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.00017515 87.308 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.76212 0.79427 14.317 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74997 0.82984 5.5299 2 1 Median 1.0017 0.87884 NaN 1 0 Median 0.75612 0.79054 NaN 1 1 Median 0.82207 0.676 19.113 2 1 Median 22150000 12211000 9938900 0 0 0 0 0 0 14297000 8304100 5993100 1691800 892690 799120 1609600 771480 838110 4551000 2242400 2308600 26294 2887 27696 139874;139875;139876;139877;139878;139879;139880 140724;140725;140726;140727;140728;140729;140730;140731;140732;140733 140726 10 NQNSWGTGEDVK NAGVTASPPTDLIWKNQNSWGTGEDVKVIL IWKNQNSWGTGEDVKVILKNSQGEEVAQRS K N Q V K V 0 0 2 1 0 1 1 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 12 0 1333.5899 P20700 P20700 517 528 LMNB1 Lamin-B1 yes yes 2 3.2154E-06 123.79 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 5 5 1.006 0.92577 23.764 13 Median NaN NaN NaN 0 0 Median 1.9739 1.7032 NaN 1 0 Median 0.93057 0.92577 NaN 1 0 Median 1.1823 0.99204 25.09 2 0 Median 0.84233 0.82603 6.7231 5 3 Median 1.3047 1.0707 11.757 4 4 Median 144620000 70350000 74270000 0 0 0 1271700 538100 733610 28196000 14300000 13895000 3345700 1256600 2089000 88979000 44568000 44411000 22829000 9687300 13141000 26295 2084 27697 139881;139882;139883;139884;139885;139886;139887;139888;139889;139890;139891;139892;139893;139894 140734;140735;140736;140737;140738;140739;140740;140741;140742;140743;140744;140745;140746;140747;140748;140749;140750;140751 140734 18 NQNSWGTGEDVKVILK NAGVTASPPTDLIWKNQNSWGTGEDVKVIL QNSWGTGEDVKVILKNSQGEEVAQRSTVFK K N Q L K N 0 0 2 1 0 1 1 2 0 1 1 2 0 0 0 1 1 1 0 2 0 0 16 1 1786.9214 P20700 P20700 517 532 LMNB1 Lamin-B1 yes yes 3 0.00020158 44.294 By MS/MS 3 0.87305 0.95428 18.971 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87305 0.95428 18.971 2 1 Median NaN NaN NaN 0 0 Median 37221000 21400000 15822000 0 0 0 0 0 0 0 0 0 0 0 0 37221000 21400000 15822000 0 0 0 26296 2084 27698 139895;139896;139897 140752;140753;140754;140755 140755 4 NQPDYYEVVSQPIDLMK GRLLCELFIRAPKRRNQPDYYEVVSQPIDL PDYYEVVSQPIDLMKIQQKLKMEEYDDVNL R N Q M K I 0 0 1 2 0 2 1 0 0 1 1 1 1 0 2 1 0 0 2 2 0 0 17 0 2037.9717 Q86U86;E7EVG2;H0Y5B5;C9JPI5;C9JQF1;C9J053 Q86U86 80 96 PBRM1 Protein polybromo-1 yes no 2;3 0.0046142 31.228 By MS/MS 2 0.70013 0.77559 10.554 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70013 0.77559 10.554 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20155000 11943000 8212000 0 0 0 0 0 0 20155000 11943000 8212000 0 0 0 0 0 0 0 0 0 26297 3273 27699 139898;139899 140756;140757;140758 140757 3 NQPQFQQMR TTTTSSGGHPLEFLRNQPQFQQMRQIIQQN PLEFLRNQPQFQQMRQIIQQNPSLLPALLQ R N Q M R Q 0 1 1 0 0 4 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 9 0 1175.5506 P54727 P54727 281 289 RAD23B UV excision repair protein RAD23 homolog B yes yes 2 0.0014144 81.784 By MS/MS By MS/MS By MS/MS 2 2 1 0.84308 0.71011 13.971 5 Median 0.68 0.66966 6.6057 2 1 Median 0.89964 0.7673 10.954 2 1 Median NaN NaN NaN 0 0 Median 1.0454 0.9043 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22650000 12097000 10553000 12025000 6702100 5322700 9755400 4943900 4811500 0 0 0 869880 451150 418730 0 0 0 0 0 0 26298 2486 27700 139900;139901;139902;139903;139904 140759;140760;140761;140762;140763;140764;140765;140766;140767 140765 9 NQPTNVTLSSGFVADR ______________________________ QPTNVTLSSGFVADRGVKHHSGGEKPFQAQ R N Q D R G 1 1 2 1 0 1 0 1 0 0 1 0 0 1 1 2 2 0 0 2 0 0 16 0 1704.8431 Q99575;E5RK39 Q99575 15 30 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 3.3452E-19 113.77 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26299 3754 27701 139905 140768 140768 1 NQQIFLR LNELVDYHRSTSVSRNQQIFLRDIEQVPQQ HRSTSVSRNQQIFLRDIEQVPQQPTYVQAL R N Q L R D 0 1 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 917.5083 P62993;J3QLF6 P62993 143 149 GRB2 Growth factor receptor-bound protein 2 yes no 2 0.0031639 121.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2607 1.121 7.9381 4 Median 1.0209 0.96955 NaN 1 0 Median 1.3529 1.1438 NaN 1 0 Median 1.1967 1.1495 NaN 1 0 Median 1.3281 1.0987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45869000 21311000 24559000 18952000 9245400 9706200 4226500 1820800 2405700 21034000 9559600 11474000 1657900 684850 973030 0 0 0 0 0 0 26300 2613 27702 139906;139907;139908;139909 140769;140770;140771;140772;140773;140774;140775;140776 140769 8 NQQITHANNTVSNFK ISFGSKNRTIGVAAKNQQITHANNTVSNFK NQQITHANNTVSNFKRFHGRAFNDPFIQKE K N Q F K R 1 0 4 0 0 2 0 0 1 1 0 1 0 1 0 1 2 0 0 1 0 0 15 0 1714.8387 Q92598;A0A0A0MSM0;R4GN69 Q92598 54 68 HSPH1 Heat shock protein 105 kDa yes no 2;3 1.3605E-09 136.38 By MS/MS By MS/MS By matching 1 6 1 0.83086 0.71784 30.185 8 Median 1.4065 1.3886 NaN 1 0 Median 0.79129 0.68811 8.6899 6 0 Median 1.1454 1.1904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27890000 14429000 13460000 3400600 1752800 1647800 23385000 12154000 11231000 1104400 522890 581510 0 0 0 0 0 0 0 0 0 26301 3541 27703 139910;139911;139912;139913;139914;139915;139916;139917 140777;140778;140779;140780;140781;140782;140783;140784 140778 8 NQQITHANNTVSNFKR ISFGSKNRTIGVAAKNQQITHANNTVSNFK QQITHANNTVSNFKRFHGRAFNDPFIQKEK K N Q K R F 1 1 4 0 0 2 0 0 1 1 0 1 0 1 0 1 2 0 0 1 0 0 16 1 1870.9398 Q92598;A0A0A0MSM0;R4GN69 Q92598 54 69 HSPH1 Heat shock protein 105 kDa yes no 3;4 0.022056 17.078 By MS/MS By matching 2 2 1.206 1.2002 19.355 4 Median 1.3828 1.4377 19.247 2 0 Median 1.1595 1.1 6.0425 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10969000 4533600 6435300 6974400 2903800 4070500 3994500 1629800 2364800 0 0 0 0 0 0 0 0 0 0 0 0 26302 3541 27704 139918;139919;139920;139921 140785;140786;140787 140786 3 NQQPVLPAGLQVPK ERVGILLDEASGVNKNQQPVLPAGLQVPKT KNQQPVLPAGLQVPKTVVSSWNRKAAEYGK K N Q P K T 1 0 1 0 0 3 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 0 1487.846 Q01780 Q01780 137 150 EXOSC10 Exosome component 10 yes yes 2 0.0024852 42.743 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.6426 0.5873 25.594 6 Median 0.37232 0.36968 NaN 1 0 Median 0.65661 0.59161 NaN 1 0 Median 0.62888 0.68162 NaN 1 0 Median 0.69703 0.58302 NaN 1 0 Median 0.4015 0.41235 NaN 1 0 Median 0.77443 0.66444 NaN 1 0 Median 25886000 15869000 10017000 2358700 1570100 788570 857930 509870 348060 20289000 12235000 8054200 876920 515710 361210 1332900 943090 389760 170690 95251 75441 26303 2691 27705 139922;139923;139924;139925;139926;139927 140788;140789 140788 2 NQQTILGSPASGIQNTIGSVGTGQQNATSLSNPNPIDPSSMQR DCPVCLPLKNASDKRNQQTILGSPASGIQN SLSNPNPIDPSSMQRAYAALGLPYMNQPQT R N Q Q R A 2 1 5 1 0 6 0 5 0 4 2 0 1 0 4 7 4 0 0 1 0 0 43 0 4365.1255 Q92793 Q92793 441 483 CREBBP CREB-binding protein yes yes 3 0.0034495 21.166 By MS/MS 1 0.41992 0.46643 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41992 0.46643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1460700 962570 498100 0 0 0 0 0 0 1460700 962570 498100 0 0 0 0 0 0 0 0 0 26304 3557 27706 139928 140790 140790 1 NQSDLKDLQDDIQNR HQGRTTQQDLSALQKNQSDLKDLQDDIQNR NQSDLKDLQDDIQNRATSFATVVKDIEGFM K N Q N R A 0 1 2 4 0 3 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1800.8602 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3650 3664 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00010625 53.3 By MS/MS 1 0.98334 1.0266 NaN 1 Median 0.98334 1.0266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17811000 8247500 9563500 17811000 8247500 9563500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26305 1220 27707 139929 140791 140791 1 NQSETLNWLSNAIK AEQVVSMAFSQKNPKNQSETLNWLSNAIKE KNQSETLNWLSNAIKEFGFSGLNVKAFISN K N Q I K E 1 0 3 0 0 1 1 0 0 1 2 1 0 0 0 2 1 1 0 0 0 0 14 0 1616.8158 Q14008 Q14008 731 744 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00078971 65.5 By MS/MS By MS/MS By MS/MS 1 2 2 1.1727 1.1383 12.647 5 Median 1.2828 1.2344 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.012 1.1066 19.688 2 0 Median 1.1991 1.0611 9.9343 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30583000 14525000 16058000 4067400 1429000 2638300 0 0 0 19776000 9710600 10065000 6739500 3385100 3354400 0 0 0 0 0 0 26306 2850 27708 139930;139931;139932;139933;139934 140792;140793;140794;140795 140793 4 NQSFCPTVNLDK GYFGKVGMKHYHLKRNQSFCPTVNLDKLWT LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK R N Q D K L 0 0 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 12 0 1421.6609 E9PLL6;P46776;E9PJD9 E9PLL6 66 77 RPL27A 60S ribosomal protein L27a yes no 2 0.00058433 74.162 By MS/MS By MS/MS 1 1 0.97261 0.87542 0.57922 2 Median 0.92987 0.87901 NaN 1 1 Median 1.0173 0.87184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12579000 6332000 6247200 4972300 2666500 2305800 7606900 3665500 3941400 0 0 0 0 0 0 0 0 0 0 0 0 26307 961 27709 139935;139936 140796;140797;140798 140797 3 NQSLVEENEK ITVEPSENLQSLMEKNQSLVEENEKLSRGL SLMEKNQSLVEENEKLSRGLSEAAGQTAQM K N Q E K L 0 0 2 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1188.5622 O95239;Q2VIQ3 O95239 392 401 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0037749 55.549 By MS/MS By MS/MS 1 1 1.0753 1.0214 4.5242 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98173 1.0546 NaN 1 0 Median 1.1778 0.98927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2466100 1137900 1328300 0 0 0 0 0 0 1737800 851620 886230 728300 286240 442060 0 0 0 0 0 0 26308 1757 27710 139937;139938 140799;140800;140801;140802 140801 4 NQSLVEENEKLSR ITVEPSENLQSLMEKNQSLVEENEKLSRGL EKNQSLVEENEKLSRGLSEAAGQTAQMLER K N Q S R G 0 1 2 0 0 1 3 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 1 1544.7794 O95239;Q2VIQ3 O95239 392 404 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 1.2395E-05 90.731 By MS/MS 1 1.073 1.2153 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.073 1.2153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4227900 1903300 2324600 0 0 0 0 0 0 4227900 1903300 2324600 0 0 0 0 0 0 0 0 0 26309 1757 27711 139939 140803;140804 140804 2 NQSPTEAEKPASSSLPSSPPPQLLTR LPNHVVFLRLREGLKNQSPTEAEKPASSSL SSSLPSSPPPQLLTRNVVFGLGGELFLWDG K N Q T R N 2 1 1 0 0 2 2 0 0 0 3 1 0 0 6 6 2 0 0 0 0 0 26 1 2718.3824 Q99567;I3L2W3 Q99567 33 58 NUP88 Nuclear pore complex protein Nup88 yes no 3 6.0396E-37 114.83 By matching By MS/MS By MS/MS 1 3 1 0.37816 0.42837 17.887 5 Median 0.35073 0.35952 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.37816 0.42837 16.442 3 1 Median 0.55731 0.52626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59095000 41179000 17916000 3601700 2653800 947910 0 0 0 52711000 36742000 15969000 2782200 1782900 999280 0 0 0 0 0 0 26310 3753 27712 139940;139941;139942;139943;139944 140805;140806;140807;140808 140806 4 NQSPVLEPVGR LVKGAMAATYSALNRNQSPVLEPVGRSTLA ALNRNQSPVLEPVGRSTLAQRRGIKKITST R N Q G R S 0 1 1 0 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 2 0 0 11 0 1194.6357 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 684 694 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.00034395 71.614 By MS/MS By MS/MS 1 1 0.76614 0.69928 9.1782 2 Median 0.77613 0.74617 NaN 1 0 Median 0.75628 0.65534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7911400 4370200 3541200 4347200 2520600 1826600 3564200 1849700 1714600 0 0 0 0 0 0 0 0 0 0 0 0 26311 581 27713 139945;139946 140809;140810;140811;140812 140809 4 NQSQGYNQWQQGQFWGQKPWSQHYHQGYY YNQNFRGRGNNRGYKNQSQGYNQWQQGQFW WGQKPWSQHYHQGYY_______________ K N Q Y Y - 0 0 2 0 0 9 0 4 2 0 0 1 0 1 1 2 0 3 4 0 0 0 29 1 3657.5987 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7 Q00839 797 825 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3;4 8.2983E-10 49.445 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 6 2 7 1 0.89966 0.91005 13.442 20 Median 0.89501 0.86648 20.672 3 0 Median 1.1237 1.0217 NaN 1 0 Median 0.88453 0.95582 13.974 6 0 Median 1.0948 0.9196 1.1946 2 0 Median 0.88002 0.88238 12.931 7 0 Median 0.97866 0.83402 NaN 1 0 Median 314850000 147530000 167320000 14798000 7560400 7238000 161270 69147 92118 118360000 54275000 64083000 1602600 701410 901180 179420000 84590000 94829000 513100 333680 179410 26312 2680 27714 139947;139948;139949;139950;139951;139952;139953;139954;139955;139956;139957;139958;139959;139960;139961;139962;139963;139964;139965;139966 140813;140814;140815;140816;140817;140818;140819;140820;140821;140822;140823 140818 11 NQTAEKEEFEHQQK KILDKCNEIINWLDKNQTAEKEEFEHQQKE KNQTAEKEEFEHQQKELEKVCNPIITKLYQ K N Q Q K E 1 0 1 0 0 3 4 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 14 1 1744.8016 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 584 597 HSPA8 Heat shock cognate 71 kDa protein yes no 3;4 6.1909E-08 162.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 3 2 1.1011 1.0769 10.702 16 Median 1.1577 1.1624 8.6512 4 0 Median 1.0991 1.025 13.027 5 0 Median 1.0009 1.1067 1.8475 2 0 Median 1.1413 1.0604 2.4012 3 0 Median 1.0263 1.1477 5.7194 2 0 Median NaN NaN NaN 0 0 Median 145180000 66881000 78303000 8761200 4137100 4624200 80920000 36019000 44902000 47469000 22937000 24531000 6884900 3250400 3634500 1149000 537420 611590 0 0 0 26313 1950 27715 139967;139968;139969;139970;139971;139972;139973;139974;139975;139976;139977;139978;139979;139980;139981;139982 140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834 140830 11 NQTLTENLLKK ELQKLKSSVNELTQKNQTLTENLLKKEQDY LTQKNQTLTENLLKKEQDYTKLEEKHNEES K N Q K K E 0 0 2 0 0 1 1 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 11 1 1300.7351 Q15075 Q15075 304 314 EEA1 Early endosome antigen 1 yes yes 3 0.0093409 28.232 By MS/MS 1 0.87375 0.87089 NaN 1 Median 0.87375 0.87089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3548000 1913600 1634300 3548000 1913600 1634300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26314 2926 27716 139983 140835 140835 1 NQVALNPQNTVFDAK VAFTDTERLIGDAAKNQVALNPQNTVFDAK NQVALNPQNTVFDAKRLIGRKFGDPVVQSD K N Q A K R 2 0 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 15 0 1657.8424 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 58 72 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 1.7178E-26 197.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 9 7 9 8 3 1.0683 0.99678 20.236 47 Plateau 1.163 1.0298 28.21 11 3 Median 1.06 0.87858 11.158 9 0 Median 1.0683 1.0643 20.459 7 1 Median 1.0365 0.8583 9.5717 9 0 Median 1.1522 1.1259 9.2779 8 2 Median 1.0707 0.8794 3.0908 3 0 Median 1728700000 791280000 937460000 593640000 266880000 326760000 338550000 159610000 178930000 569040000 259800000 309250000 127040000 59162000 67883000 90979000 41406000 49573000 9481000 4419600 5061300 26315 278 27717 139984;139985;139986;139987;139988;139989;139990;139991;139992;139993;139994;139995;139996;139997;139998;139999;140000;140001;140002;140003;140004;140005;140006;140007;140008;140009;140010;140011;140012;140013;140014;140015;140016;140017;140018;140019;140020;140021;140022;140023;140024;140025;140026;140027;140028;140029;140030 140836;140837;140838;140839;140840;140841;140842;140843;140844;140845;140846;140847;140848;140849;140850;140851;140852;140853;140854;140855;140856;140857;140858;140859;140860;140861;140862;140863;140864;140865;140866;140867;140868;140869;140870;140871;140872;140873;140874;140875;140876;140877;140878;140879;140880;140881;140882;140883;140884;140885;140886;140887;140888;140889;140890;140891;140892;140893;140894;140895;140896 140892 61 NQVALNPQNTVFDAKR VAFTDTERLIGDAAKNQVALNPQNTVFDAK QVALNPQNTVFDAKRLIGRKFGDPVVQSDM K N Q K R L 2 1 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 16 1 1813.9435 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 58 73 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 1.3834E-21 193.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 6 4 3 11 4 1.1728 1.1851 23.09 35 Median 1.1313 1.0954 7.4205 8 0 Median 1.1088 0.99436 31.914 6 1 Median 1.257 1.3203 17.902 4 1 Median 1.5051 1.38 48.49 3 0 Median 1.2029 1.3168 13.656 10 0 Median 1.118 0.98591 21.573 4 0 Median 940130000 411860000 528280000 623850000 268960000 354880000 38785000 16582000 22203000 104930000 45578000 59353000 7970400 2943100 5027300 151380000 71292000 80084000 13224000 6497800 6726200 26316 278 27718 140031;140032;140033;140034;140035;140036;140037;140038;140039;140040;140041;140042;140043;140044;140045;140046;140047;140048;140049;140050;140051;140052;140053;140054;140055;140056;140057;140058;140059;140060;140061;140062;140063;140064;140065;140066 140897;140898;140899;140900;140901;140902;140903;140904;140905;140906;140907;140908;140909;140910;140911;140912;140913;140914;140915;140916;140917;140918;140919;140920;140921;140922;140923;140924;140925;140926;140927;140928;140929;140930;140931;140932;140933;140934;140935;140936;140937;140938;140939;140940;140941;140942 140902 44 NQVAMNPQNTVFDAKR VAFTDTERLIGDAAKNQVAMNPQNTVFDAK QVAMNPQNTVFDAKRLIGRKFNDPVVQADM K N Q K R L 2 1 3 1 0 2 0 0 0 0 0 1 1 1 1 0 1 0 0 2 0 0 16 1 1831.8999 Q53FA3;P34931 Q53FA3 59 74 HSPA1L Heat shock 70 kDa protein 1-like yes no 3 4.0358E-05 61.097 By MS/MS 1 1.2205 1.3422 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2205 1.3422 NaN 1 1 Median NaN NaN NaN 0 0 Median 6988600 2458200 4530400 0 0 0 0 0 0 0 0 0 0 0 0 6988600 2458200 4530400 0 0 0 26317 2229 27719 140067 140943 140943 1 NQVAMNPTNTVFDAK VAFTDTERLIGDAAKNQVAMNPTNTVFDAK NQVAMNPTNTVFDAKRLIGRRFDDAVVQSD K N Q A K R 2 0 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 15 0 1648.7879 P11142;E9PKE3;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 57 71 HSPA8 Heat shock cognate 71 kDa protein yes no 2 1.315E-19 191.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 3 6 2 1.0103 0.91348 25.111 25 Median 0.99939 0.89964 2.6887 6 0 Median 1.0125 0.84935 12.786 4 0 Median 1.26 1.2084 40.151 4 1 Median 1.0381 0.8722 12.641 3 0 Median 1.0938 1.108 27.069 6 1 Median 1.045 0.8666 5.7289 2 1 Median 1668700000 814160000 854550000 608640000 293280000 315360000 239790000 114900000 124900000 527740000 266440000 261300000 152610000 73686000 78923000 130280000 61566000 68713000 9643200 4289400 5353800 26318 1950 27720;27721 140068;140069;140070;140071;140072;140073;140074;140075;140076;140077;140078;140079;140080;140081;140082;140083;140084;140085;140086;140087;140088;140089;140090;140091;140092 140944;140945;140946;140947;140948;140949;140950;140951;140952;140953;140954;140955;140956;140957;140958;140959;140960;140961;140962;140963;140964;140965;140966;140967;140968;140969;140970;140971;140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985;140986;140987;140988;140989;140990;140991;140992;140993;140994;140995 140961 730 52 NQVAMNPTNTVFDAKR VAFTDTERLIGDAAKNQVAMNPTNTVFDAK QVAMNPTNTVFDAKRLIGRRFDDAVVQSDM K N Q K R L 2 1 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 16 1 1804.889 P11142;E9PKE3;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 57 72 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 4.073E-47 226.73 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 12 4 2 2 9 3 1.0018 1.1005 15.141 30 Plateau 1.0191 1.053 12.577 11 2 Median 0.9418 0.8467 19.949 4 0 Median 0.95624 1.0175 5.1376 2 1 Median 1.0215 0.92024 3.57 2 0 Median 0.91663 1.0089 14.264 9 2 Median 1.2121 1.0745 21.598 2 1 Median 660120000 322260000 337860000 431160000 206110000 225050000 12212000 5577700 6634800 81736000 40398000 41337000 1641300 737160 904150 126720000 66388000 60334000 6645600 3046800 3598800 26319 1950 27722;27723 140093;140094;140095;140096;140097;140098;140099;140100;140101;140102;140103;140104;140105;140106;140107;140108;140109;140110;140111;140112;140113;140114;140115;140116;140117;140118;140119;140120;140121;140122;140123;140124 140996;140997;140998;140999;141000;141001;141002;141003;141004;141005;141006;141007;141008;141009;141010;141011;141012;141013;141014;141015;141016;141017;141018;141019;141020;141021;141022;141023;141024;141025;141026;141027;141028;141029;141030;141031 141000 730 36 NQVDVEIK ETERSALDVKLKHARNQVDVEIKRRQRAEA VKLKHARNQVDVEIKRRQRAEADCEKLERQ R N Q I K R 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 8 0 943.49746 Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8VVE5;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VS54;F8VYH6;F8VQZ5;F8VV37 Q9H0H5 77 84 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.027074 41.429 By MS/MS 1 0.68519 0.72833 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68519 0.72833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3951300 2551200 1400100 0 0 0 0 0 0 3951300 2551200 1400100 0 0 0 0 0 0 0 0 0 26320 3926 27724 140125 141032;141033 141032 2 NQVEDLLATLEK WMHTDPVSQKNESVRNQVEDLLATLEKSGA SVRNQVEDLLATLEKSGAGVPAVILRRPNQ R N Q E K S 1 0 1 1 0 1 2 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 12 0 1371.7246 Q92542;Q5T205;H0Y6T7;H0Y3Z4 Q92542 392 403 NCSTN Nicastrin yes no 2 0.00062094 66.595 By MS/MS By MS/MS By matching 2 3 1 0.98372 1.0136 27.322 6 Median 1.1365 1.1225 6.939 2 0 Median 0.7844 0.68996 32.816 3 0 Median 0.88977 0.96129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15541000 6660800 8880600 4225400 1872100 2353300 11039000 4638400 6400500 277020 150270 126760 0 0 0 0 0 0 0 0 0 26321 3535 27725 140126;140127;140128;140129;140130;140131 141034;141035;141036;141037;141038 141036 5 NQVLVFVHSR MNEIVYEKIMEHAGKNQVLVFVHSRKETGK EHAGKNQVLVFVHSRKETGKTARAIRDMCL K N Q S R K 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 0 3 0 0 10 0 1197.6618 O75643;A0A494C1A5 O75643 719 728 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.00014428 120.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 3 4 1.3151 1.2328 15.841 17 Median 1.3151 1.2423 13.643 3 2 Plateau 1.6696 1.4251 14.114 3 0 Median 1.1094 1.2075 10.962 3 2 Median 1.4289 1.2581 8.3891 2 0 Median 1.292 1.3377 6.5675 2 0 Median 1.3889 1.1572 26.828 4 1 Median 128490000 56687000 71803000 19309000 7750300 11559000 25827000 10384000 15443000 46107000 22815000 23293000 10438000 4311300 6126500 17090000 7307800 9782500 9718800 4119700 5599100 26322 1688 27726 140132;140133;140134;140135;140136;140137;140138;140139;140140;140141;140142;140143;140144;140145;140146;140147;140148;140149;140150 141039;141040;141041;141042;141043;141044;141045;141046;141047;141048;141049;141050;141051;141052;141053;141054;141055;141056;141057;141058 141043 19 NQVVGLVTR FRALGLRHLVVVDNRNQVVGLVTRKDLARY VVVDNRNQVVGLVTRKDLARYRLGKRGLEE R N Q T R K 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 3 0 0 9 0 984.57163 P51798 P51798 776 784 CLCN7 H(+)/Cl(-) exchange transporter 7 yes yes 2 0.0017261 78.334 By MS/MS By MS/MS By matching 1 2 1 1.4602 1.3246 13.69 4 Median 1.3831 1.3894 NaN 1 0 Median 1.619 1.3246 3.7969 2 0 Median NaN NaN NaN 0 0 Median 1.1891 1.031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28031000 10825000 17205000 4369700 1704100 2665600 23517000 9052500 14465000 0 0 0 143740 68691 75048 0 0 0 0 0 0 26323 2442 27727 140151;140152;140153;140154 141059;141060 141059 2 NQVVHVPLEAYDSSLPLIK ILEGLQSILHKNRLRNQVVHVPLEAYDSSL HVPLEAYDSSLPLIKAILTAAIVDADRIAV R N Q I K A 1 0 1 1 0 1 1 0 1 1 3 1 0 0 2 2 0 0 1 3 0 0 19 0 2121.147 Q9Y5S2;H0YLY0 Q9Y5S2 1223 1241 CDC42BPB Serine/threonine-protein kinase MRCK beta yes no 3 0.056434 8.7088 By matching By MS/MS 1 1 0.87873 0.89748 9.0829 2 Median 0.89478 0.84165 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86296 0.95702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2595500 1431100 1164400 1725200 1005600 719620 0 0 0 870360 425560 444800 0 0 0 0 0 0 0 0 0 26324 4468 27728 140155;140156 141061 141061 1 NQWIDNVEK NPGNQAAYEHFETMKNQWIDNVEKMTGLVD HFETMKNQWIDNVEKMTGLVDEAIDTKSLL K N Q E K M 0 0 2 1 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 9 0 1144.5513 P18206 P18206 700 708 VCL Vinculin yes yes 2 0.0033861 65.465 By MS/MS By MS/MS By matching 2 1 1 1.0091 0.91263 47.125 4 Median 1.28 1.2659 39.843 2 0 Median 1.0325 0.87205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44337 0.53143 NaN 1 0 Median NaN NaN NaN 0 0 Median 30528000 16068000 14460000 11451000 6209600 5241800 15372000 7676200 7695900 0 0 0 0 0 0 3704000 2182000 1522000 0 0 0 26325 2057 27729 140157;140158;140159;140160 141062;141063;141064 141062 3 NQWQLSADDLKK PKTAWRLDCAQLKEKNQWQLSADDLKKLKP KEKNQWQLSADDLKKLKPGLEKDFLPLYFG K N Q K K L 1 0 1 2 0 2 0 0 0 0 2 2 0 0 0 1 0 1 0 0 0 0 12 1 1444.731 P09543;K7ERC4 P09543 165 176 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes no 3 0.010078 39.394 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26326 1918 27730 140161 141065 141065 1 NQYDNDVTVWSPQGR ______________________________ NQYDNDVTVWSPQGRIHQIEYAMEAVKQGS R N Q G R I 0 1 2 2 0 2 0 1 0 0 0 0 0 0 1 1 1 1 1 2 0 0 15 0 1777.802 P25786;B4DEV8 P25786 4 18 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2 3.3831E-09 149.38 By MS/MS By MS/MS By MS/MS 1 1 1 0.94867 0.90151 5.1284 3 Median 0.90231 0.84303 NaN 1 0 Median 1.1024 0.93239 NaN 1 0 Median 0.94867 0.90151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22165000 10934000 11232000 8932800 4461300 4471500 10221000 4934900 5285900 3011600 1537400 1474200 0 0 0 0 0 0 0 0 0 26327 2136 27731 140162;140163;140164 141066;141067;141068;141069;141070;141071;141072 141071 7 NQYVTLHDMILK EKEYISLRLIISELRNQYVTLHDMILKNIE ELRNQYVTLHDMILKNIEKIKRPRSSNAET R N Q L K N 0 0 1 1 0 1 0 0 1 1 2 1 1 0 0 0 1 0 1 1 0 0 12 0 1473.765 K9J957;P61289;K7ESG5;A0A087WTV2;B3KQ25 K9J957 203 214 PSME3 Proteasome activator complex subunit 3 yes no 2;3 4.7077E-06 116.77 By MS/MS By matching By MS/MS By matching By MS/MS By matching 5 3 2 2 1 1 1.2743 1.0928 30.476 14 Median 1.1108 1.0291 7.1929 5 0 Median 1.2778 1.0559 9.3568 3 0 Plateau 1.4848 1.4252 7.0277 2 0 Median 1.3115 1.0901 4.5174 2 0 Median 2.9764 3.0322 NaN 1 0 Median 1.4419 1.1954 NaN 1 0 Median 170000000 75574000 94422000 148410000 66797000 81610000 7531400 3700000 3831400 5790200 2148700 3641500 2435400 954700 1480700 2068500 400040 1668500 3763400 1573700 2189700 26328 1403 27732;27733 140165;140166;140167;140168;140169;140170;140171;140172;140173;140174;140175;140176;140177;140178 141073;141074;141075;141076;141077;141078;141079;141080;141081 141079 452 9 NRAEQWNVNYVETSAK SDLEDKRQVSVEEAKNRAEQWNVNYVETSA RAEQWNVNYVETSAKTRANVDKVFFDLMRE K N R A K T 2 1 3 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 2 0 0 16 1 1907.9126 P11233;H7C3P7 P11233 144 159 RALA Ras-related protein Ral-A yes no 2;3 7.7888E-06 89.231 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.1526 1.0569 23.469 7 Median 1.0075 1.0506 0.84908 2 0 Median 1.3955 1.3016 22.387 2 0 Median 0.74334 0.77264 NaN 1 1 Median 1.3916 1.2318 26.646 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60697000 29200000 31498000 41473000 20403000 21070000 5776700 2600300 3176400 6575700 3323600 3252000 6871500 2872500 3999100 0 0 0 0 0 0 26329 1958 27734 140179;140180;140181;140182;140183;140184;140185 141082;141083;141084;141085;141086;141087;141088 141084 7 NRDFVHFDDTSEPPTETVR GLERVWFFFAPEMGRNRDFVHFDDTSEPPT VHFDDTSEPPTETVRKYFPETWIWDLVVVS R N R V R K 0 2 1 3 0 0 2 0 1 0 0 0 0 2 2 1 3 0 0 2 0 0 19 1 2261.0349 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 719 737 yes yes 3 2.0153E-15 92.932 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8621900 8621900 0 8621900 8621900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 26330 734 27735 140186 141089 141089 1 NRDHDTFLAVR DGRWTELAGCTADFRNRDHDTFLAVRYSRG ADFRNRDHDTFLAVRYSRGRLTVMTDLEDK R N R V R Y 1 2 1 2 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 11 1 1342.6742 Q12907;D6RBV2;D6RIU4;D6RDX1 Q12907 208 218 LMAN2 Vesicular integral-membrane protein VIP36 yes no 3 4.801E-05 89.403 By MS/MS By MS/MS By MS/MS 1 1 2 1.1775 1.1802 14.083 4 Median 1.1009 1.1852 NaN 1 0 Median 1.3752 1.2658 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1135 1.0391 17.406 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19141000 8303100 10838000 8429300 3915300 4514000 7329100 2918300 4410800 0 0 0 3382200 1469500 1912700 0 0 0 0 0 0 26331 2770 27736 140187;140188;140189;140190 141090;141091;141092;141093;141094;141095 141093 6 NRDSDKTDTDWR AQDKDRDDRSFGRDRNRDSDKTDTDWRARP RDRNRDSDKTDTDWRARPATDSFDDYPPRR R N R W R A 0 2 1 4 0 0 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 12 2 1507.6651 E7EX17;P23588;F8W0K0;F8VSC7;F8VP89 E7EX17 189 200 EIF4B Eukaryotic translation initiation factor 4B yes no 3 0.034422 21.251 By MS/MS By matching By matching 2 1 1 1.1319 1.2046 12.761 4 Median 1.0673 1.077 6.8668 2 0 Median NaN NaN NaN 0 0 Median 1.144 1.2834 NaN 1 0 Median 1.3332 1.3638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4213900 1935700 2278200 2973200 1343800 1629400 0 0 0 1049700 508790 540960 191010 83156 107860 0 0 0 0 0 0 26332 904 27737 140191;140192;140193;140194 141096;141097;141098 141096 3 NREEEWDPEYTPK SGNNNNNSNNDFQKRNREEEWDPEYTPKSK KRNREEEWDPEYTPKSKKYYLHDDREGEGS R N R P K S 0 1 1 1 0 0 4 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 13 1 1691.7427 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 864 876 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2;3 0.0019073 56.783 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1 0.7543 0.75355 15.587 8 Median 0.64986 0.67568 NaN 1 0 Median 0.75299 0.71778 NaN 1 0 Median 0.55408 0.62758 9.1133 2 0 Median 0.98861 0.95007 NaN 1 0 Median 0.76469 0.84131 1.7387 2 0 Median 0.90052 0.79109 NaN 1 0 Median 30410000 17627000 12782000 3242800 1664500 1578300 1279200 607520 671690 10818000 7145200 3672500 2226400 1119500 1106900 12225000 6810100 5414900 618580 280620 337960 26333 439 27738 140195;140196;140197;140198;140199;140200;140201;140202 141099;141100;141101;141102 141099 4 NREEFEDQSLEK KDKNETENDSKDAEKNREEFEDQSLEKDSD AEKNREEFEDQSLEKDSDDKTPDDDPEQGK K N R E K D 0 1 1 1 0 1 4 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 12 1 1522.69 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81;F5H176 Q12830 593 604 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.006121 33.195 By MS/MS 2 1.2495 1.1849 0.046001 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2495 1.1849 0.046001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2288900 1024400 1264500 0 0 0 0 0 0 0 0 0 2288900 1024400 1264500 0 0 0 0 0 0 26334 2762 27739 140203;140204 141103 141103 1 NREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELR IMADIRAQYDELARKNREELDKYWSQQIEE SAEVGAAETTLTELRRTVQSLEIDLDSMRN K N R L R R 3 2 1 1 0 3 7 1 0 1 3 1 0 0 0 3 7 1 1 3 0 0 38 2 4312.0983 P05783;F8VZY9 P05783 263 300 KRT18 Keratin, type I cytoskeletal 18 yes no 4 0.0035789 23.024 By MS/MS By matching 1 1 0.78009 0.87106 43.234 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0104 1.1825 NaN 1 0 Median 0.60226 0.64162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10030000 4288200 5741500 0 0 0 0 0 0 9939700 4244800 5694900 90044 43457 46587 0 0 0 0 0 0 26335 1869 27740 140205;140206 141104;141105 141104 2 NREELGFRPEYSASQLK LGMIDRWYHPGCFVKNREELGFRPEYSASQ EELGFRPEYSASQLKGFSLLATEDKEALKK K N R L K G 1 2 1 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 17 2 2023.0123 P09874 P09874 166 182 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 5.7262E-19 174.78 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 5 2 18 18 4 6 0.96287 1.0237 29.882 53 Median 0.83334 0.89755 23.648 5 0 Median 0.97864 0.9683 15.499 2 0 Median 0.85083 0.99176 40.419 18 1 Median 1.1175 1.0853 25.918 18 2 Median 0.89277 1.1242 6.2297 4 1 Linear 1.0921 1.0363 18.765 6 0 Median 3045300000 1509400000 1535900000 96778000 52057000 44721000 2157400 1097600 1059800 1852500000 944010000 908510000 937530000 433270000 504260000 110390000 57408000 52986000 45892000 21543000 24349000 26336 1922 27741 140207;140208;140209;140210;140211;140212;140213;140214;140215;140216;140217;140218;140219;140220;140221;140222;140223;140224;140225;140226;140227;140228;140229;140230;140231;140232;140233;140234;140235;140236;140237;140238;140239;140240;140241;140242;140243;140244;140245;140246;140247;140248;140249;140250;140251;140252;140253;140254;140255;140256;140257;140258;140259 141106;141107;141108;141109;141110;141111;141112;141113;141114;141115;141116;141117;141118;141119;141120;141121;141122;141123;141124;141125;141126;141127;141128;141129;141130;141131;141132;141133;141134;141135;141136;141137;141138;141139;141140;141141;141142;141143;141144;141145;141146;141147;141148;141149;141150;141151;141152;141153;141154;141155;141156;141157;141158;141159;141160;141161;141162;141163;141164;141165;141166;141167;141168;141169;141170;141171;141172 141147 67 NRELEEELRK ELEAVKQAKLKLEEKNRELEEELRKARAEA KLEEKNRELEEELRKARAEAEDARQKAKDD K N R R K A 0 2 1 0 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 2 1314.6892 A0A087X2D8;O60271;H0YBE9 A0A087X2D8 452 461 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 0.001191 56.043 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.1364 1.1185 61.326 5 Median 1.1478 1.1388 2.5445 2 0 Median 1.0776 1.0392 NaN 1 0 Median 0.27467 0.28479 NaN 1 0 Median 1.1578 1.1598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10765000 4910100 5854400 4599200 1957500 2641700 5252300 2228200 3024200 792490 672620 119870 120480 51856 68620 0 0 0 0 0 0 26337 134 27742 140260;140261;140262;140263;140264 141173;141174;141175;141176 141175 4 NREPLMPSPQFIK VLKLLGKEKAKEKYKNREPLMPSPQFIKSY YKNREPLMPSPQFIKSYFSSFTDDIISQPM K N R I K S 0 1 1 0 0 1 1 0 0 1 1 1 1 1 3 1 0 0 0 0 0 0 13 1 1555.8181 O94826 O94826 246 258 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 3 0.016729 24.935 By MS/MS By matching 1 1 0.81351 0.78198 15.54 2 Median 0.69749 0.70061 NaN 1 0 Median 0.94883 0.87281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6886900 4218700 2668200 5363200 3365400 1997900 1523700 853360 670300 0 0 0 0 0 0 0 0 0 0 0 0 26338 1728 27743 140265;140266 141177 141177 1 NREPVQLETLSIR VSMNTHLKAVKMTLKNREPVQLETLSIRGN LKNREPVQLETLSIRGNNIRYFILPDSLPL K N R I R G 0 2 1 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 1 1553.8526 P62314;J3QLI9 P62314 49 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes no 2;3 1.6406E-131 289.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 2 6 6 0.96699 0.93875 20.523 27 Median 0.87546 0.91598 7.6479 4 0 Linear 1.2225 1.0797 8.9547 4 0 Median 0.86266 0.93683 7.2885 5 0 Median 1.1255 1.0078 0.2781 2 0 Median 0.92168 1.0168 14.209 6 0 Median 1.0134 0.90536 38.382 6 0 Median 1472400000 766560000 705800000 100200000 52830000 47371000 114300000 51872000 62433000 1082400000 572050000 510340000 15298000 6719700 8577800 111270000 58997000 52270000 48899000 24093000 24806000 26339 2585 27744 140267;140268;140269;140270;140271;140272;140273;140274;140275;140276;140277;140278;140279;140280;140281;140282;140283;140284;140285;140286;140287;140288;140289;140290;140291;140292;140293 141178;141179;141180;141181;141182;141183;141184;141185;141186;141187;141188;141189;141190;141191;141192;141193;141194;141195;141196;141197;141198;141199;141200;141201;141202;141203;141204;141205;141206;141207;141208;141209;141210;141211;141212;141213 141191 36 NRESYEVSLTQK SPKRKNITYEELRNKNRESYEVSLTQKTDP RNKNRESYEVSLTQKTDPSVRPMHERVPKK K N R Q K T 0 1 1 0 0 1 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 12 1 1452.7209 D6RDK6;D6RBN5;Q9NX40 D6RDK6 152 163 OCIAD1 OCIA domain-containing protein 1 yes no 3 0.0080725 30.484 By matching By MS/MS 1 1 1.4162 1.3418 4.712 2 Median 1.3917 1.3873 NaN 1 0 Median 1.4411 1.2979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8412100 3328400 5083700 4538300 1847500 2690800 3873800 1480800 2393000 0 0 0 0 0 0 0 0 0 0 0 0 26340 815 27745 140294;140295 141214 141214 1 NRETASELLMR RIQEKVDSIDDRHRKNRETASELLMRLKDN RHRKNRETASELLMRLKDNRDLQKFLQDCQ K N R M R L 1 2 1 0 0 0 2 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 11 1 1318.6663 Q01082;A0A087WUZ3 Q01082 1260 1270 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.1317E-29 211.64 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 1 0.96255 1.0681 24.3 7 Median 0.77748 0.83144 NaN 1 0 Median 1.0463 0.98064 NaN 1 0 Median 0.96255 1.2159 18.706 3 0 Median NaN NaN NaN 0 0 Median 1.1426 1.2361 NaN 1 0 Median 0.87309 0.76631 NaN 1 0 Median 91274000 43882000 47392000 8292800 3949000 4343800 9141000 4011400 5129600 60303000 30096000 30207000 0 0 0 11085000 4750900 6334300 2452700 1075000 1377700 26341 2681 27746;27747 140296;140297;140298;140299;140300;140301;140302 141215;141216;141217;141218;141219;141220;141221;141222;141223 141216 1379 9 NRGPPPSWGR CRVRVELSNGEKRSRNRGPPPSWGRRPRDD EKRSRNRGPPPSWGRRPRDDYRRRSPPPRR R N R G R R 0 2 1 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 10 1 1122.5683 P84103 P84103 89 98 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 1.7391E-21 196.88 By MS/MS 2 0.69152 0.76343 7.4814 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69152 0.76343 7.4814 2 0 Median NaN NaN NaN 0 0 Median 11216000 6635000 4580900 0 0 0 0 0 0 0 0 0 0 0 0 11216000 6635000 4580900 0 0 0 26342 2668 27748 140303;140304 141224;141225 141225 2 NRHPNFLVVEK TVTGFLLGGIGELNKNRHPNFLVVEKDTTI ELNKNRHPNFLVVEKDTTINEIEDTFRQFL K N R E K D 0 1 2 0 0 0 1 0 1 0 1 1 0 1 1 0 0 0 0 2 0 0 11 1 1351.7361 Q16864 Q16864 31 41 ATP6V1F V-type proton ATPase subunit F yes yes 3 5.8305E-05 77.674 By MS/MS 1 1.087 0.95967 NaN 1 Median NaN NaN NaN 0 0 Median 1.087 0.95967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5542700 2581500 2961200 0 0 0 5542700 2581500 2961200 0 0 0 0 0 0 0 0 0 0 0 0 26343 3000 27749 140305 141226;141227 141227 2 NRKPSDSVHITNDDER KKEKNKEAIYSGYIRNRKPSDSVHITNDDE RKPSDSVHITNDDERFLHHLIIEEKEKDSF R N R E R F 0 2 2 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 16 2 1881.8929 A6NHR9 A6NHR9 289 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 0.0072498 25.319 By MS/MS By matching 2 1 0.77399 0.92314 1.5009 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76287 0.91674 2.0453 2 0 Median 0.92158 0.92314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4436600 2543100 1893600 0 0 0 0 0 0 4301800 2489300 1812600 134770 53770 80996 0 0 0 0 0 0 26344 518 27750 140306;140307;140308 141228;141229;141230 141229 3 NRLDYHISVQNMMR VTYRERLYRVYKEVKNRLDYHISVQNMMRR KNRLDYHISVQNMMRRKEQEHMINWVEKHV K N R M R R 0 2 2 1 0 1 0 0 1 1 1 0 2 0 0 1 0 0 1 1 0 0 14 1 1775.8559 Q5QNZ2;P24539 Q5QNZ2 134 147 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3;4 1.4935E-06 94.688 By MS/MS By MS/MS 3 3 1.2636 1.3507 11.645 5 Median 1.063 1.1363 10.662 3 0 Median 1.6545 1.4051 0.50784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118480000 53085000 65396000 103770000 49341000 54429000 14711000 3744400 10967000 0 0 0 0 0 0 0 0 0 0 0 0 26345 2124 27751;27752 140309;140310;140311;140312;140313;140314 141231;141232;141233;141234;141235 141232 888 5 NRLEEVSPNLVR IAGMTLPYDTLDQVRNRLEEVSPNLVRYDD QVRNRLEEVSPNLVRYDDIEGANYFQQANE R N R V R Y 0 2 2 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 12 1 1424.7736 P28331;B4DJ81 P28331 644 655 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2;3 2.3419E-05 101.39 By MS/MS By matching By MS/MS 2 1 2 0.98709 0.99418 47.595 4 Median 0.65157 0.66805 8.9062 2 0 Median 1.4041 1.3892 NaN 1 0 Median 1.4598 1.6291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20113000 9917000 10196000 15032000 7661000 7370900 1412100 608010 804090 3669000 1648000 2021000 0 0 0 0 0 0 0 0 0 26346 2165 27753 140315;140316;140317;140318;140319 141236;141237;141238;141239 141238 4 NRLENDGATALAEAFR AQGKPLALKVFVAGRNRLENDGATALAEAF RLENDGATALAEAFRVIGTLEEVHMPQNGI R N R F R V 4 2 2 1 0 0 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 16 1 1746.8649 P46060 P46060 190 205 RANGAP1 Ran GTPase-activating protein 1 yes yes 2;3 3.5209E-10 117.4 By MS/MS By matching By MS/MS By matching By matching 2 1 4 1 1 1.1287 1.1054 48.008 9 Median 1.1811 1.211 0.86098 2 0 Median 0.78527 0.71318 NaN 1 0 Median 1.4689 1.638 53.224 4 1 Linear 1.1863 1.1054 NaN 1 0 Median 0.35601 0.38171 NaN 1 0 Median NaN NaN NaN 0 0 Median 57633000 28837000 28795000 18372000 7955900 10416000 2068800 1094400 974370 33396000 17128000 16268000 327330 140800 186530 3468600 2518100 950420 0 0 0 26347 2336 27754 140320;140321;140322;140323;140324;140325;140326;140327;140328 141240;141241;141242;141243;141244;141245 141243 6 NRNELAETLALLK EQDDQDGSSWKCIVRNRNELAETLALLKAQ VRNRNELAETLALLKAQIDPVLLKNSSQQD R N R L K A 2 1 2 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 13 1 1483.8358 Q96T23;H0YER1;H7C306 Q96T23 194 206 RSF1 Remodeling and spacing factor 1 yes no 3 0.00083824 47.189 By MS/MS By matching 3 2 0.98528 1.093 30.636 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.021 1.1586 14.356 3 0 Plateau 0.98722 0.88735 55.213 2 0 Median 9773300 4599700 5173700 0 0 0 0 0 0 0 0 0 0 0 0 5698800 2907100 2791700 4074600 1692600 2382000 26348 3740 27755 140329;140330;140331;140332;140333 141246;141247;141248;141249 141246 4 NRPFMGSISQQNIR DKYNLQLNPEWRMMKNRPFMGSISQQNIRS KNRPFMGSISQQNIRSEQRPRIQELGDLYT K N R I R S 0 2 2 0 0 2 0 1 0 2 0 0 1 1 1 2 0 0 0 0 0 0 14 1 1646.8311 M0R2P8;M0R3A4;M0QYA2;Q9NWS0;M0QXD5 M0R2P8 48 61 PIH1D1 PIH1 domain-containing protein 1 yes no 2;3 1.5248E-06 116.01 By MS/MS By MS/MS By MS/MS 3 1 2 0.87804 0.89837 16.578 6 Median 0.88525 0.95302 6.9128 3 0 Plateau 0.94119 0.86632 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90924 0.84849 34.9 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53596000 28305000 25291000 45998000 24652000 21347000 3881300 1669900 2211400 0 0 0 3716500 1983000 1733500 0 0 0 0 0 0 26349 1414 27756;27757 140334;140335;140336;140337;140338;140339 141250;141251;141252;141253;141254;141255 141253 453 6 NRPGLSYHYAHSHLAEEEGEDKEDSQPPTPVSQR RDKPYACDICGKRYKNRPGLSYHYAHSHLA EDKEDSQPPTPVSQRSEEQKSKKGPDGLAL K N R Q R S 2 2 1 2 0 2 5 2 3 0 2 1 0 0 4 4 1 0 2 1 0 0 34 2 3859.7786 Q92785;J3KMZ8 Q92785 220 253 DPF2 Zinc finger protein ubi-d4 yes no 5 9.4033E-10 42.582 By MS/MS By MS/MS 2 1 0.4259 0.54639 9.6259 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41159 0.50434 11.326 2 1 Median 0.51927 0.55321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32578000 22735000 9843000 0 0 0 0 0 0 19786000 15121000 4665100 12792000 7613900 5178000 0 0 0 0 0 0 26350 1299 27758 140340;140341;140342 141256;141257;141258;141259;141260 141259 5 NRPGLSYHYTHTHLAEEEGEENAER RDKPYVCDICGKRYKNRPGLSYHYTHTHLA HTHLAEEEGEENAERHALPFHRKNNHKQFY K N R E R H 2 2 2 0 0 0 6 2 3 0 2 0 0 0 1 1 2 0 2 0 0 0 25 1 2938.323 C8C3P2;C9JGC1;J3KQY6;E9PDV3 C8C3P2 206 230 DPF1 yes no 4 3.5013E-05 32.72 By MS/MS 1 0.43784 0.44876 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43784 0.44876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4217200 2864000 1353200 0 0 0 0 0 0 4217200 2864000 1353200 0 0 0 0 0 0 0 0 0 26351 659 27759 140343 141261 141261 1 NRPLSDEELDAMFPEGYK EQLQAWRWEREIDERNRPLSDEELDAMFPE LSDEELDAMFPEGYKVLPPPAGYVPIRTPA R N R Y K V 1 1 1 2 0 0 3 1 0 0 2 1 1 1 2 1 0 0 1 0 0 0 18 1 2109.9677 O75533 O75533 396 413 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 3.9122E-14 122.14 By MS/MS By MS/MS By matching By MS/MS 1 3 1 3 0.70716 0.78942 13.648 8 Median 0.79847 0.8305 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.66986 0.7594 6.9964 3 1 Median 0.94473 0.9079 NaN 1 0 Median 0.69355 0.76275 21.725 3 0 Median NaN NaN NaN 0 0 Median 48978000 28462000 20516000 3539700 1796600 1743100 0 0 0 30180000 17523000 12657000 438300 240710 197590 14820000 8901500 5918500 0 0 0 26352 1683 27760;27761 140344;140345;140346;140347;140348;140349;140350;140351 141262;141263;141264;141265;141266;141267;141268;141269;141270;141271;141272;141273;141274 141265 547 13 NRPNVQVGDLIYGQFVVANK PASLSYLSFEGATKRNRPNVQVGDLIYGQF QVGDLIYGQFVVANKDMEPEMVCIDSCGRA R N R N K D 1 1 3 1 0 2 0 2 0 1 1 1 0 1 1 0 0 0 1 4 0 0 20 1 2230.1859 Q9NQT5 Q9NQT5 153 172 EXOSC3 Exosome complex component RRP40 yes yes 3 7.6172E-06 45.608 By matching By matching By MS/MS 1 1 1 1.0404 0.96296 24.635 3 Median 0.70879 0.69844 NaN 1 0 Median 1.0404 0.96296 NaN 1 0 Median 1.0415 1.1335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6116300 2536100 3580200 798340 425670 372670 593230 272130 321100 4724700 1838300 2886400 0 0 0 0 0 0 0 0 0 26353 4067 27762 140352;140353;140354 141275;141276 141276 2 NRPPFGQGYTQPGPGYR STMTPPPSGPNPYARNRPPFGQGYTQPGPG PPFGQGYTQPGPGYR_______________ R N R Y R - 0 2 1 0 0 2 0 4 0 0 0 0 0 1 4 0 1 0 2 0 0 0 17 1 1890.9125 Q92734 Q92734 384 400 TFG Protein TFG yes yes 3 5.6064E-14 114.64 By MS/MS By MS/MS By MS/MS 2 2 1 0.73372 0.72288 18.25 5 Median 0.78547 0.78348 11.385 2 0 Median 0.7202 0.65179 22.395 2 0 Median NaN NaN NaN 0 0 Median 0.62778 0.5776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23637000 13857000 9780800 14359000 8249300 6110200 7268000 4401600 2866400 0 0 0 2009800 1205700 804130 0 0 0 0 0 0 26354 3551 27763 140355;140356;140357;140358;140359 141277;141278;141279;141280;141281 141277 5 NRPPLPAGTNSK KDVYVQLYLQHLTARNRPPLPAGTNSKGPP TARNRPPLPAGTNSKGPPDFSSDEEREPTP R N R S K G 1 1 2 0 0 0 0 1 0 0 1 1 0 0 3 1 1 0 0 0 0 0 12 1 1250.6731 P42166;P42167;G5E972 P42166 49 60 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 0.0016791 46.462 By MS/MS By MS/MS By MS/MS By MS/MS 10 7 7 3 0.6041 0.62424 19.891 27 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54608 0.59481 12.175 10 0 Median 0.81824 0.72431 9.3893 7 0 Median 0.50242 0.55765 17.167 7 0 Median 0.84692 0.75343 48.509 3 0 Median 28750000 17930000 10819000 0 0 0 0 0 0 15760000 10101000 5658300 2406900 1351200 1055700 8829000 5528800 3300100 1754200 948740 805430 26355 2306;2307 27764 140360;140361;140362;140363;140364;140365;140366;140367;140368;140369;140370;140371;140372;140373;140374;140375;140376;140377;140378;140379;140380;140381;140382;140383;140384;140385;140386 141282;141283;141284;141285;141286;141287;141288;141289;141290;141291;141292;141293;141294 141283 13 NRPSSGSLIQVVTTEGR LEFLVETFHDWITGKNRPSSGSLIQVVTTE PSSGSLIQVVTTEGRTELTPAYF_______ K N R G R T 0 2 1 0 0 1 1 2 0 1 1 0 0 0 1 3 2 0 0 2 0 0 17 1 1799.949 P09417 P09417 220 236 QDPR Dihydropteridine reductase yes yes 2;3 1.4999E-11 125.53 By MS/MS 2 0.99607 1.0647 3.1766 2 Median 0.99607 1.0647 3.1766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75578000 35445000 40132000 75578000 35445000 40132000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26356 1914 27765 140387;140388 141295;141296;141297 141297 3 NRPSVPPPPQPPGVHSAGDSSLTNTAPTASK HAGTLPRPRPVPKPRNRPSVPPPPQPPGVH AGDSSLTNTAPTASKIVTDSNSRVSEPHRS R N R S K I 3 1 2 1 0 1 0 2 1 0 1 1 0 0 8 5 3 0 0 2 0 0 31 1 3063.5374 Q68EM7;I3L3P1;I3L4Y5;I3L460 Q68EM7 805 835 ARHGAP17 Rho GTPase-activating protein 17 yes no 4 3.7423E-06 37.536 By MS/MS 1 0.42709 0.48451 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42709 0.48451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7314300 6354000 960310 0 0 0 0 0 0 7314300 6354000 960310 0 0 0 0 0 0 0 0 0 26357 3127 27766 140389 141298 141298 1 NRPTSISWDGLDSGK AVDELGKVLTPTQVKNRPTSISWDGLDSGK NRPTSISWDGLDSGKLYTLVLTDPDAPSRK K N R G K L 0 1 1 2 0 0 0 2 0 1 1 1 0 0 1 3 1 1 0 0 0 0 15 1 1631.7903 P30086 P30086 48 62 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3 1.7096E-18 131.69 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 2 1.0246 1.042 27.312 14 Median 1.3025 1.3012 33.117 4 1 Linear 1.3189 1.2231 29.96 6 1 Median 0.90077 0.95061 2.8127 2 0 Median 1.354 1.1986 10.304 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 538240000 250520000 287720000 408400000 192620000 215770000 67498000 25177000 42321000 59161000 31423000 27738000 3185800 1296000 1889800 0 0 0 0 0 0 26358 2188 27767 140390;140391;140392;140393;140394;140395;140396;140397;140398;140399;140400;140401;140402;140403 141299;141300;141301;141302;141303;141304;141305;141306;141307;141308;141309;141310;141311;141312;141313;141314;141315;141316;141317;141318;141319;141320 141304 22 NRQEYDALAK AECKKQILQAKRIRKNRQEYDALAKVIQHH KRIRKNRQEYDALAKVIQHHPDRHETLKEL K N R A K V 2 1 1 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 10 1 1206.5993 Q6I9Y2;A0A024R341 Q6I9Y2 115 124 THOC7;NIF3L1BP1 THO complex subunit 7 homolog yes no 2;3 0.0098688 56.432 By MS/MS By MS/MS 2 2 1.0562 1.0129 16.308 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85379 0.8812 16.571 2 0 Median 1.2349 1.0931 7.6666 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8607700 4212200 4395600 0 0 0 0 0 0 7639400 3776800 3862500 968360 435330 533030 0 0 0 0 0 0 26359 3136 27768 140404;140405;140406;140407 141321;141322;141323;141324;141325 141323 5 NRQEYEDIAVK ASQLTCLGCLELIAKNRQEYEDIAVKLGTD LIAKNRQEYEDIAVKLGTDLEYLKKVRGKV K N R V K L 1 1 1 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 11 1 1363.6732 O15294 O15294 972 982 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.00071714 96.89 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1173 1.168 23.923 4 Median 1.62 1.6769 NaN 1 0 Median 1.0639 0.99747 NaN 1 0 Median 1.1522 1.3101 NaN 1 0 Median 1.0835 1.0412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10075000 4992800 5082100 1552600 866730 685890 5066000 2566900 2499100 2148900 964400 1184500 1307500 594860 712660 0 0 0 0 0 0 26360 1537 27769 140408;140409;140410;140411 141326;141327;141328;141329 141326 4 NRVQNMALYADVGGK STETVFIVEISLTCKNRVQNMALYADVGGK NRVQNMALYADVGGKQFPVTRGQDVGRYQV K N R G K Q 2 1 2 1 0 1 0 2 0 0 1 1 1 0 0 0 0 0 1 2 0 0 15 1 1634.8199 P51571 P51571 59 73 SSR4 Translocon-associated protein subunit delta yes yes 2 0.00025701 83.397 By MS/MS 1 1.0646 1.0513 NaN 1 Median 1.0646 1.0513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10239000 4980300 5258400 10239000 4980300 5258400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26361 2435 27770 140412 141330;141331 141330 2 NRYENVIIPR VNSCSRIYRSSKQCRNRYENVIIPREEGKS SKQCRNRYENVIIPREEGKSKNNRPLRTSQ R N R P R E 0 2 2 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 1 1 0 0 10 1 1272.6939 Q96L91 Q96L91 2423 2432 EP400 E1A-binding protein p400 yes yes 3 0.00396 41.399 By matching By MS/MS 1 1 0.78173 0.79112 0.20667 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7188 0.78996 NaN 1 0 Median 0.85016 0.79228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5778600 2686200 3092400 0 0 0 0 0 0 5215700 2385600 2830200 562900 300610 262290 0 0 0 0 0 0 26362 3700 27771 140413;140414 141332 141332 1 NRYQLEIPENFTTR NRIGCRTIVYWGIGRNRYQLEIPENFTTRN RNRYQLEIPENFTTRNLPEEYELKSTKKGC R N R T R N 0 2 2 0 0 1 2 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 14 1 1779.8904 P52701;A0A494C0M1;A0A087WWJ1 P52701 975 988 MSH6 DNA mismatch repair protein Msh6 yes no 3 0.0091947 39.509 By MS/MS 1 0.81552 0.99184 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81552 0.99184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4935200 2715200 2220000 0 0 0 0 0 0 4935200 2715200 2220000 0 0 0 0 0 0 0 0 0 26363 2453 27772 140415 141333 141333 1 NSAADLEHPEPSLPLSR ELKMEAEKITRTASKNSAADLEHPEPSLPL AADLEHPEPSLPLSRTRRRNVRSVYATMGD K N S S R T 2 1 1 1 0 0 2 0 1 0 3 0 0 0 3 3 0 0 0 0 0 0 17 0 1831.9064 Q96T58 Q96T58 1882 1898 SPEN Msx2-interacting protein yes yes 3 0.00060499 35.872 By MS/MS By matching 1 1 0.81675 0.78606 38.711 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56845 0.59783 NaN 1 0 Median 1.1735 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17975000 10963000 7011400 0 0 0 0 0 0 16842000 10462000 6380100 1133000 501680 631310 0 0 0 0 0 0 26364 3741 27773 140416;140417 141334 141334 1 NSAASGLFIQAIQSR SHEPPVQDFISAVHRNSAASGLFIQAIQSR NSAASGLFIQAIQSRCENLSTPTMLKKTLQ R N S S R C 3 1 1 0 0 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 0 0 15 0 1561.8213 P42858 P42858 1946 1960 HTT Huntingtin yes yes 2 0.00041172 62.528 By MS/MS 1 0.52027 0.51092 NaN 1 Median 0.52027 0.51092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10035000 6745900 3289300 10035000 6745900 3289300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26365 2319 27774 140418 141335 141335 1 NSAFESLYQDK TELLDLQPLPVSALRNSAFESLYQDKFPFF SALRNSAFESLYQDKFPFFNPIQTQVFNTV R N S D K F 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 11 0 1300.5935 O75643;A0A494C1A5 O75643 1314 1324 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0026556 76.143 By MS/MS By MS/MS 1 1 1.2927 1.157 4.4684 2 Median NaN NaN NaN 0 0 Median 1.2617 1.121 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3244 1.1942 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7581300 3813200 3768100 0 0 0 2883900 1450600 1433300 0 0 0 4697300 2362500 2334800 0 0 0 0 0 0 26366 1688 27775 140419;140420 141336;141337 141337 2 NSAHSAGVGAIFDR VRDGILLATGLHVHRNSAHSAGVGAIFDRV RNSAHSAGVGAIFDRVLTELVSKMRDMRMD R N S D R V 3 1 1 1 0 0 0 2 1 1 0 0 0 1 0 2 0 0 0 1 0 0 14 0 1400.6797 P28702;A0A0G2JKR7;A0A0G2JHI1;P19793 P28702 406 419 RXRB;RXRA Retinoic acid receptor RXR-beta;Retinoic acid receptor RXR-alpha no no 3 0.0097272 37.042 By MS/MS By MS/MS 1 1 1.2911 1.2495 26.566 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3883 1.5077 NaN 1 0 Median 1.2007 1.0355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10919000 7043200 3875800 0 0 0 0 0 0 2693100 1306900 1386200 8225900 5736300 2489500 0 0 0 0 0 0 26367 280;2070 27776 140421;140422 141338;141339 141339 2 NSAILSDPSVFSPLNK SPRKPRGRPRSGSDRNSAILSDPSVFSPLN SAILSDPSVFSPLNKSETKSGDKIKKKDSK R N S N K S 1 0 2 1 0 0 0 0 0 1 2 1 0 1 2 4 0 0 0 1 0 0 16 0 1687.8781 Q03164;E9PR05;A0A3B3ISN4 Q03164 186 201 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes no 2 0.00010428 70.488 By MS/MS 1 0.61266 0.66643 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61266 0.66643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828100 1735200 1093000 0 0 0 0 0 0 2828100 1735200 1093000 0 0 0 0 0 0 0 0 0 26368 2708 27777 140423 141340 141340 1 NSALSAQLR TSLGLSEQKARETLKNSALSAQLREAATQA ARETLKNSALSAQLREAATQAQQTLGSTID K N S L R E 2 1 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 958.51959 P47897;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RQU2;F2Z2V6;A0A0U1RQC3 P47897 26 34 QARS Glutamine--tRNA ligase yes no 2 6.9663E-08 137.9 By MS/MS 1 2.0272 1.7526 NaN 1 Median NaN NaN NaN 0 0 Median 2.0272 1.7526 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15492000 3881500 11610000 0 0 0 15492000 3881500 11610000 0 0 0 0 0 0 0 0 0 0 0 0 26369 2356 27778 140424 141341 141341 1 NSAQGNVYVK ECNKHGGVIHIYVDKNSAQGNVYVKCPSIA IYVDKNSAQGNVYVKCPSIAAAIAAVNALH K N S V K C 1 0 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 1 2 0 0 10 0 1078.5407 Q14498;H0Y4X3 Q14498 468 477 RBM39 RNA-binding protein 39 yes no 2 0.012249 41.575 By matching By MS/MS By matching 2 1 1 1.1671 1.1253 17.717 4 Median NaN NaN NaN 0 0 Median 1.2867 1.1542 18.357 2 0 Median 1.1742 1.2492 NaN 1 0 Median 1.0362 0.90103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5514700 2618500 2896200 0 0 0 1985900 936740 1049200 3379100 1604800 1774300 149650 76901 72750 0 0 0 0 0 0 26370 2879 27779 140425;140426;140427;140428 141342;141343 141342 2 NSASLFTASDYK LLLGYLHDFLKYLAKNSASLFTASDYKVAS LAKNSASLFTASDYKVASAEYHRKAL____ K N S Y K V 2 0 1 1 0 0 0 0 0 0 1 1 0 1 0 3 1 0 1 0 0 0 12 0 1302.6092 Q15014;A0A0A0MT59 Q15014 266 277 MORF4L2 Mortality factor 4-like protein 2 yes no 2 0.0044584 43.512 By MS/MS 1 1.2115 1.0257 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2115 1.0257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1609400 633320 976120 0 0 0 0 0 0 0 0 0 1609400 633320 976120 0 0 0 0 0 0 26371 2912 27780 140429 141344 141344 1 NSATLFSASDYEVAPPEYHR LLLNYLHDFLKYLAKNSATLFSASDYEVAP FSASDYEVAPPEYHRKAV____________ K N S H R K 3 1 1 1 0 0 2 0 1 0 1 0 0 1 2 3 1 0 2 1 0 0 20 0 2253.0338 B3KTM8;Q9UBU8 B3KTM8 326 345 MORF4L1 Mortality factor 4-like protein 1 yes no 3 2.6237E-09 82.609 By matching By MS/MS By MS/MS 1 2 1 0.68742 0.68805 25.439 4 Median 0.43656 0.447 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68742 0.7106 14.913 2 0 Median 0.8333 0.7403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56288000 32294000 23994000 835380 568950 266430 0 0 0 54267000 31090000 23176000 1186300 634940 551400 0 0 0 0 0 0 26372 585 27781 140430;140431;140432;140433 141345;141346;141347;141348;141349 141345 5 NSAVETVEQELLFVGSETGK KLNLDNVISVSIGARNSAVETVEQELLFVG TVEQELLFVGSETGKLLAMRELVKKGFNPP R N S G K L 1 0 1 0 0 1 4 2 0 0 2 1 0 1 0 2 2 0 0 3 0 0 20 0 2136.0586 Q9Y2R4 Q9Y2R4 380 399 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2;3 0.0018445 28.632 By matching By MS/MS By matching 1 2 1 1.2093 1.1669 7.7729 4 Median 1.2411 1.1951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1397 1.2196 12.262 2 0 Median NaN NaN NaN 0 0 Median 1.1783 1.1394 NaN 1 0 Median NaN NaN NaN 0 0 Median 2727500 1227700 1499800 260570 122920 137640 0 0 0 1932900 864790 1068100 0 0 0 533970 239970 294000 0 0 0 26373 4389 27782 140434;140435;140436;140437 141350;141351;141352 141351 3 NSDEADLVPAK ATDSSGELMFLMKWKNSDEADLVPAKEANV MKWKNSDEADLVPAKEANVKCPQVVISFYE K N S A K E 2 0 1 2 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1157.5564 P83916;B5MD17;J3KS05 P83916 140 150 CBX1 Chromobox protein homolog 1 yes no 2 0.0001134 121.73 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 0.94385 0.91828 117.45 7 Median 0.039387 0.040079 NaN 1 0 Median 1.092 0.92013 NaN 1 1 Median 0.89781 0.84137 NaN 1 0 Median 0.94385 0.7818 NaN 1 0 Median 0.89791 0.91828 NaN 1 0 Median 1.1712 0.94877 3.9234 2 0 Median 68986000 36694000 32292000 5787000 5537600 249370 3708600 1780300 1928300 10998000 4617000 6380800 3022600 1789000 1233600 33060000 17050000 16010000 12409000 5919600 6489900 26374 2663 27783 140438;140439;140440;140441;140442;140443;140444 141353;141354;141355;141356;141357;141358;141359;141360;141361;141362;141363 141363 11 NSDLLTSPDVGLLK LADPVGSLKPHLRAKNSDLLTSPDVGLLKL KNSDLLTSPDVGLLKLASPELERLIIQSSN K N S L K L 0 0 1 2 0 0 0 1 0 0 4 1 0 0 1 2 1 0 0 1 0 0 14 0 1470.793 P05412 P05412 57 70 JUN Transcription factor AP-1 yes yes 2 0.0039231 38.402 By MS/MS 1 0.69883 0.6925 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69883 0.6925 NaN 1 0 Median NaN NaN NaN 0 0 Median 2907300 1700500 1206800 0 0 0 0 0 0 0 0 0 0 0 0 2907300 1700500 1206800 0 0 0 26375 1866 27784 140445 141364;141365 141365 2 NSDRTPLVSVLLEGPPHSGK TRVLDDGELLVQQTKNSDRTPLVSVLLEGP PLVSVLLEGPPHSGKTALAAKIAEESNFPF K N S G K T 0 1 1 1 0 0 1 2 1 0 3 1 0 0 3 3 1 0 0 2 0 0 20 1 2102.112 I3L0N3;P46459 I3L0N3 525 544 NSF Vesicle-fusing ATPase yes no 3 0.00023333 35.036 By MS/MS 1 0.52148 0.53447 NaN 1 Median 0.52148 0.53447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3306800 2288600 1018100 3306800 2288600 1018100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26376 1272 27785 140446 141366 141366 1 NSDSILEAIQK KYHIQVCTTTPCMLRNSDSILEAIQKKLGI CMLRNSDSILEAIQKKLGIKVGETTPDKLF R N S Q K K 1 0 1 1 0 1 1 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 11 0 1216.6299 E7EPT4;P19404 E7EPT4 147 157 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.017216 54.982 By MS/MS 2 1.0711 0.99971 1.7258 2 Median 1.0711 0.99971 1.7258 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26386000 13484000 12902000 26386000 13484000 12902000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26377 873 27786 140447;140448 141367;141368 141368 2 NSDVLQSPLDSAAR SQKMREQQALSREAKNSDVLQSPLDSAARD KNSDVLQSPLDSAARDEL____________ K N S A R D 2 1 1 2 0 1 0 0 0 0 2 0 0 0 1 3 0 0 0 1 0 0 14 0 1471.7267 Q8NBJ5 Q8NBJ5 606 619 COLGALT1 Procollagen galactosyltransferase 1 yes yes 2 0.0016745 47.288 By matching By matching By MS/MS 1 1 1 1.0392 1.0913 17.025 3 Plateau NaN NaN NaN 0 0 Median 1.1549 0.99671 NaN 1 0 Median 1.0392 1.0913 NaN 1 0 Median 0.93883 0.78487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7373700 3220600 4153100 0 0 0 1535700 717130 818570 4713000 1933100 2780000 1124900 570350 554570 0 0 0 0 0 0 26378 3404 27787 140449;140450;140451 141369;141370 141369 2 NSDVLQSPLDSAARDEL SQKMREQQALSREAKNSDVLQSPLDSAARD DVLQSPLDSAARDEL_______________ K N S E L - 2 1 1 3 0 1 1 0 0 0 3 0 0 0 1 3 0 0 0 1 0 0 17 1 1828.8803 Q8NBJ5 Q8NBJ5 606 622 COLGALT1 Procollagen galactosyltransferase 1 yes yes 2 0.00017227 63.727 By MS/MS 1 1.2117 1.2091 NaN 1 Median 1.2117 1.2091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2742600 1284200 1458400 2742600 1284200 1458400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26379 3404 27788 140452 141371 141371 1 NSEDAVMTAVR YLELFHTSIEQEKERNSEDAVMTAVRAWEF EKERNSEDAVMTAVRAWEFWNLKTLQEREA R N S V R A 2 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 2 0 0 11 0 1191.5554 Q96L91 Q96L91 2184 2194 EP400 E1A-binding protein p400 yes yes 2 0.00019596 95.775 By MS/MS 1 0.88998 0.95523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88998 0.95523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5338500 2799600 2538900 0 0 0 0 0 0 5338500 2799600 2538900 0 0 0 0 0 0 0 0 0 26380 3700 27789 140453 141372 141372 1 NSEGEATELITETFTSK QHLLQDPVIRECRLRNSEGEATELITETFT EGEATELITETFTSKSAISKTAESSGGPST R N S S K S 1 0 1 0 0 0 4 1 0 1 1 1 0 1 0 2 4 0 0 0 0 0 17 0 1855.8687 A0A2R8Y6W8;P19447;H7C309;A0A2R8Y762;A0A2R8YES7;A0A2R8Y5L2 A0A2R8Y6W8 201 217 ERCC3 TFIIH basal transcription factor complex helicase XPB subunit yes no 2 0.028769 35.204 By MS/MS 1 0.91186 0.97372 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91186 0.97372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2150900 1013500 1137400 0 0 0 0 0 0 2150900 1013500 1137400 0 0 0 0 0 0 0 0 0 26381 378 27790 140454 141373 141373 1 NSEGWEQNGLYEFFR AVEAFYSPPSHDRPRNSEGWEQNGLYEFFR NSEGWEQNGLYEFFRAKMRARRRKGQEKRN R N S F R A 0 1 2 0 0 1 3 2 0 0 1 0 0 2 0 1 0 1 1 0 0 0 15 0 1874.8224 J3QK89;Q8IWX8 J3QK89 715 729 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.00033678 54.143 By MS/MS By MS/MS 2 1 0.89719 0.92475 12.089 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84977 0.89904 3.9867 2 0 Median NaN NaN NaN 0 0 Median 1.0327 1.1021 NaN 1 0 Median NaN NaN NaN 0 0 Median 3185700 1659700 1525900 0 0 0 0 0 0 1730600 945570 785050 0 0 0 1455000 714150 740890 0 0 0 26382 1338 27791 140455;140456;140457 141374;141375;141376 141375 3 NSELLVVSAR SQGSTLVHPFRALGKNSELLVVSAREDVAT RALGKNSELLVVSAREDVATWQQSSLSLRW K N S A R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1086.6033 P78316;E9PFK5 P78316 644 653 NOP14 Nucleolar protein 14 yes no 2 0.0044043 53.327 By matching By matching By MS/MS 2 1 1 1.1438 0.97495 29.423 4 Median NaN NaN NaN 0 0 Median 1.3683 1.1802 41.655 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82029 0.82505 NaN 1 0 Median 1.3162 1.0812 NaN 1 0 Median 5041900 2014200 3027700 0 0 0 2360800 902340 1458500 0 0 0 0 0 0 1992700 856180 1136600 688340 255660 432680 26383 2637 27792 140458;140459;140460;140461 141377 141377 1 NSEPAGLETPEAK GQPPLSQSSDSSPTRNSEPAGLETPEAKVL TRNSEPAGLETPEAKVLFDKVASQGEVVRK R N S A K V 2 0 1 0 0 0 3 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 13 0 1341.6412 P07814;V9GYZ6 P07814 890 902 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.00016426 94.297 By MS/MS By MS/MS 1 2 0.8406 0.74618 6.8537 3 Median 0.75297 0.7202 NaN 1 0 Median 0.88968 0.78324 6.8557 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9371800 4939100 4432700 2906000 1801700 1104300 6465800 3137400 3328400 0 0 0 0 0 0 0 0 0 0 0 0 26384 1892 27793 140462;140463;140464 141378;141379;141380;141381;141382;141383;141384 141382 6 NSEPAPQPHRPLDPLTMHSTYDR FKKIKELYETRYAKKNSEPAPQPHRPLDPL HRPLDPLTMHSTYDRAGAVPRTPLAGPNID K N S D R A 1 2 1 2 0 1 1 0 2 0 2 0 1 0 5 2 2 0 1 0 0 0 23 1 2658.2609 Q8N2W9 Q8N2W9 70 92 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 4 0.0014774 34.217 By MS/MS 1 0.50994 0.55077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50994 0.55077 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2678000 1907900 770070 0 0 0 0 0 0 2678000 1907900 770070 0 0 0 0 0 0 0 0 0 26385 3362 27794 140465 141385 141385 1 NSEPEEVIPSR PDPSKQKPMAKGPAKNSEPEEVIPSRLDIR GPAKNSEPEEVIPSRLDIRVGKIITVEKHP K N S S R L 0 1 1 0 0 0 3 0 0 1 0 0 0 0 2 2 0 0 0 1 0 0 11 0 1255.6044 P54577 P54577 357 367 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 2 0.00014133 117.31 By MS/MS By MS/MS By matching 1 1 1 0.91286 0.82727 8.6365 3 Median 0.97331 0.93351 NaN 1 0 Median 0.91286 0.78968 NaN 1 0 Median 0.79256 0.82727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19456000 9697600 9758700 7661200 3921800 3739400 11027000 5331500 5695300 768380 444360 324020 0 0 0 0 0 0 0 0 0 26386 2482 27795 140466;140467;140468 141386;141387;141388 141388 3 NSESLHQENKPGSVKPTQTIAVK NDKSTAPIAKPLATRNSESLHQENKPGSVK NKPGSVKPTQTIAVKESLTTDLQTRKEKDT R N S V K E 1 0 2 0 0 2 2 1 1 1 1 3 0 0 2 3 2 0 0 2 0 0 23 2 2491.3031 J3QQW9;Q15022 J3QQW9 358 380 SUZ12 Polycomb protein SUZ12 yes no 3;4 0.067776 7.0315 By MS/MS By MS/MS 2 1 0.83014 0.88061 28.068 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88515 0.93897 9.0744 2 0 Median 0.52467 0.58493 NaN 1 0 Median NaN NaN NaN 0 0 Median 9353700 5222200 4131500 0 0 0 0 0 0 0 0 0 5229900 2573900 2656100 4123800 2648400 1475400 0 0 0 26387 1344 27796 140469;140470;140471 141389;141390;141391;141392 141389 4 NSETFPTILEEAK TKDDAMAAVPAKVSKNSETFPTILEEAKEL SKNSETFPTILEEAKELVGRAS________ K N S A K E 1 0 1 0 0 0 3 0 0 1 1 1 0 1 1 1 2 0 0 0 0 0 13 0 1477.73 A0A0G2JH68;O60610;A0A140T8Z0;H9KV28;H7C2W8 A0A0G2JH68 1253 1265 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.00094063 61.958 By MS/MS 1 0.6943 0.67102 NaN 1 Median 0.6943 0.67102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12313000 7196200 5116500 12313000 7196200 5116500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26388 274 27797 140472 141393 141393 1 NSEVYQEVQAMFDTLGIPK QILQNKKHKNSQLDKNSEVYQEVQAMFDTL YQEVQAMFDTLGIPKSTTSDIPHMLNQVES K N S P K S 1 0 1 1 0 2 2 1 0 1 1 1 1 1 1 1 1 0 1 2 0 0 19 0 2168.046 Q52LJ0;H0YNA1 Q52LJ0 143 161 FAM98B Protein FAM98B yes no 2 0.045409 20.381 By MS/MS 1 0.87993 0.88063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87993 0.88063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2239800 1154600 1085200 0 0 0 0 0 0 2239800 1154600 1085200 0 0 0 0 0 0 0 0 0 26389 3025 27798 140473 141394 141394 1 NSFNNPAYYVLEGVPHQLLPPEPPSPAR EGAPEPEGVAAPPPKNSFNNPAYYVLEGVP VPHQLLPPEPPSPARAPVPSATKNKVAITV K N S A R A 2 1 3 0 0 1 2 1 1 0 3 0 0 1 7 2 0 0 2 2 0 0 28 0 3102.5563 O15357;A0A0A0MTP6 O15357 979 1006 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 3 0.069526 5.6602 By MS/MS 1 0.37323 0.4008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37323 0.4008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 768560 523970 244590 0 0 0 0 0 0 768560 523970 244590 0 0 0 0 0 0 0 0 0 26390 1539 27799 140474 141395 141395 1 NSFQPISSLRDDERR ERWARSLNKQKENFKNSFQPISSLRDDERR NSFQPISSLRDDERRESATADAGYAILEKK K N S R R E 0 3 1 2 0 1 1 0 0 1 1 0 0 1 1 3 0 0 0 0 0 0 15 2 1818.8973 P98175 P98175 671 685 RBM10 RNA-binding protein 10 yes yes 3;4 0.00029529 44.968 By MS/MS By matching By matching 2 1 1 0.84231 0.9631 15.044 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84231 0.96113 1.9823 2 0 Median NaN NaN NaN 0 0 Median 0.82316 0.95164 NaN 1 0 Median 1.2586 1.2929 NaN 1 0 Median 25592000 11663000 13928000 0 0 0 0 0 0 20988000 9342100 11646000 0 0 0 4378700 2233200 2145500 224510 87876 136640 26391 2671 27800 140475;140476;140477;140478 141396;141397;141398 141398 3 NSFREQLEEEEEAKHNLEK KLSLSTKLKQVEDEKNSFREQLEEEEEAKH EQLEEEEEAKHNLEKQIATLHAQVADMKKK K N S E K Q 1 1 2 0 0 1 7 0 1 0 2 2 0 1 0 1 0 0 0 0 0 0 19 2 2358.1088 P35579 P35579 1339 1357 MYH9 Myosin-9 yes yes 4 0.00021771 36.805 By MS/MS By matching 1 1 1.1269 1.3317 5.1762 2 Median 1.2145 1.2838 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0455 1.3813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23808000 10528000 13281000 18158000 8296900 9861400 0 0 0 5650100 2230600 3419500 0 0 0 0 0 0 0 0 0 26392 2244 27801 140479;140480 141399;141400 141400 2 NSGELEATSAFLASGQR KFNLDLSTVTQAFLKNSGELEATSAFLASG GELEATSAFLASGQRADGYPIWSRQDDIDL K N S Q R A 3 1 1 0 0 1 2 2 0 0 2 0 0 1 0 3 1 0 0 0 0 0 17 0 1736.8329 Q9NYB0 Q9NYB0 339 355 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 7.7733E-13 126.95 By MS/MS By matching 2 1 0.94831 0.86105 11.24 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84962 0.86466 15.893 2 0 Median 0.9971 0.86105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9378900 4902000 4477000 0 0 0 0 0 0 8207900 4321300 3886600 1171100 580690 590390 0 0 0 0 0 0 26393 4174 27802 140481;140482;140483 141401;141402;141403 141401 3 NSGLVSITSR LGAGACGGVPIIFSRNSGLVSITSRENVSI IIFSRNSGLVSITSRENVSILAEDLEGSLA R N S S R E 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1032.5564 Q8WUM0 Q8WUM0 467 476 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00028413 126.49 By MS/MS By MS/MS 1 1 1.1657 1.1266 4.5081 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0579 1.1631 NaN 1 0 Median 1.2845 1.0913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18778000 9257700 9519800 0 0 0 0 0 0 14318000 7398300 6919300 4459900 1859300 2600500 0 0 0 0 0 0 26394 3492 27803 140484;140485 141404;141405;141406;141407 141404 4 NSGMPPGAAAIAVLPVTLDTPMNR AKGAVHQLCQSLAGKNSGMPPGAAAIAVLP AIAVLPVTLDTPMNRKSMPEADFSSWTPLE K N S N R K 4 1 2 1 0 0 0 2 0 1 2 0 2 0 4 1 2 0 0 2 0 0 24 0 2392.2243 P09417 P09417 168 191 QDPR Dihydropteridine reductase yes yes 2 0.00010824 35.303 By MS/MS 1 0.49538 0.46566 NaN 1 Median 0.49538 0.46566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1105100 721000 384080 1105100 721000 384080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26395 1914 27804 140486 141408 141408 1 NSGQNLEEDMGQSEQKADPPATEK LRPSPRLLCTATKQKNSGQNLEEDMGQSEQ MGQSEQKADPPATEKTLLEEKVKLEEQLKE K N S E K T 2 0 2 2 0 3 4 2 0 0 1 2 1 0 2 2 1 0 0 0 0 0 24 1 2602.1453 Q9HAV7 Q9HAV7 35 58 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 3 0.0088552 20.757 By MS/MS By MS/MS By matching 1 1 1 0.86739 0.81224 10.671 3 Median 0.79984 0.81224 NaN 1 0 Median 1.0448 0.9546 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86739 0.78033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29191000 14223000 14967000 21922000 10976000 10946000 6095700 2616600 3479100 0 0 0 1173300 631240 542080 0 0 0 0 0 0 26396 4013 27805 140487;140488;140489 141409;141410;141411;141412 141412 4 NSGVISVK ECINEKKRQKKKSYKNSGVISVKQCEITVE QKKKSYKNSGVISVKQCEITVECTFLDYIM K N S V K Q 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 0 2 0 0 8 0 802.45487 O75131;H0YB26 O75131 263 270 CPNE3 Copine-3 yes no 2 0.015598 50.04 By matching By MS/MS 1 1 1.2818 1.198 21.401 2 Median 1.0129 1.0298 NaN 1 0 Median 1.6222 1.3937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2677600 1043300 1634200 610220 284000 326230 2067400 759350 1308000 0 0 0 0 0 0 0 0 0 0 0 0 26397 1645 27806 140490;140491 141413 141413 1 NSGVLMVVK ERCSEQVQDFTKCCKNSGVLMVVKCRKENS FTKCCKNSGVLMVVKCRKENSALKECLTAY K N S V K C 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 3 0 0 9 0 945.53174 Q7Z7K0;C9JES7 Q7Z7K0 44 52 CMC1 COX assembly mitochondrial protein homolog yes no 2 0.019204 40.067 By MS/MS By MS/MS 1 1 1.2749 1.0978 28.9 2 Median 0.98127 0.89492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6564 1.3467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9500200 4281300 5218900 7924800 3679100 4245700 0 0 0 0 0 0 1575400 602140 973240 0 0 0 0 0 0 26398 3260 27807 140492;140493 141414;141415;141416 141414 3 NSGVPAFLTPLLR MVESLQSVLALGHKRNSGVPAFLTPLLRNI KRNSGVPAFLTPLLRNIIISLARLPLVNSY R N S L R N 1 1 1 0 0 0 0 1 0 0 3 0 0 1 2 1 1 0 0 1 0 0 13 0 1383.7874 P42858 P42858 2381 2393 HTT Huntingtin yes yes 2 4.8978E-05 88.681 By MS/MS By matching 1 1 0.87536 0.80985 5.6651 2 Median 0.7751 0.77805 NaN 1 0 Median 0.98858 0.84294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5608700 3103600 2505000 4533000 2579100 1953800 1075700 524490 551210 0 0 0 0 0 0 0 0 0 0 0 0 26399 2319 27808 140494;140495 141417;141418 141418 2 NSHLINVLMWELEK ITFEYMFEEVPIVIKNSHLINVLMWELEKK KNSHLINVLMWELEKKSAVADKHELLSLAS K N S E K K 0 0 2 0 0 0 2 0 1 1 3 1 1 0 0 1 0 1 0 1 0 0 14 0 1724.892 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 221 234 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 4.4866E-11 174.39 By MS/MS 2 0.85519 0.72677 41.088 2 Median NaN NaN NaN 0 0 Median 0.85519 0.72677 41.088 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26807000 12341000 14466000 0 0 0 26807000 12341000 14466000 0 0 0 0 0 0 0 0 0 0 0 0 26400 584 27809 140496;140497 141419;141420 141420 2 NSIILTYR GFSRDLFIQWCQDPKNSIILTYRTTPGTLA QWCQDPKNSIILTYRTTPGTLARFLIDNPS K N S Y R T 0 1 1 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 8 0 978.54983 Q9P2I0 Q9P2I0 351 358 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2 0.0061436 72.485 By matching By MS/MS 1 1 1.357 1.1736 4.8314 2 Median NaN NaN NaN 0 0 Median 1.3991 1.2144 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3162 1.1342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4845900 2094600 2751400 0 0 0 2384300 1015300 1368900 0 0 0 2461700 1079200 1382400 0 0 0 0 0 0 26401 4223 27810 140498;140499 141421 141421 1 NSILAQVLDQSAR DAAQQEAKHREAEMRNSILAQVLDQSARAR MRNSILAQVLDQSARARLSNLALVKPEKTK R N S A R A 2 1 1 1 0 2 0 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1413.7576 O14737;K7EQA1;K7ESJ4 O14737 41 53 PDCD5 Programmed cell death protein 5 yes no 2 7.8566E-10 169.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 1.0803 0.99926 20.5 7 Median 1.1549 1.115 6.6693 3 0 Plateau 1.1075 0.94132 NaN 1 0 Median 1.0803 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2655 1.346 NaN 1 0 Median 0.91821 0.68761 NaN 1 0 Median 121530000 54616000 66909000 98899000 43859000 55039000 10123000 4637000 5486300 8312900 3947000 4366000 0 0 0 1513700 624340 889330 2676800 1548700 1128100 26402 1491 27811 140500;140501;140502;140503;140504;140505;140506 141422;141423;141424;141425;141426;141427;141428;141429;141430;141431;141432;141433;141434 141425 13 NSILASSGFGAPLPSSSQPLTFGSGR KQKGSRSQASGENSRNSILASSGFGAPLPS PLPSSSQPLTFGSGRSQSNGVLATENKPLG R N S G R S 2 1 1 0 0 1 0 4 0 1 3 0 0 2 3 7 1 0 0 0 0 0 26 0 2534.2765 Q7LBC6 Q7LBC6 464 489 KDM3B Lysine-specific demethylase 3B yes yes 3 2.047E-08 39.783 By MS/MS By MS/MS 1 1 0.50485 0.52293 1.7167 2 Median 0.53455 0.51662 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47681 0.52932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6081700 3951400 2130200 4007800 2615300 1392600 0 0 0 2073900 1336200 737690 0 0 0 0 0 0 0 0 0 26403 3230 27812 140507;140508 141435;141436;141437;141438 141435 4 NSINQVVQLR KSMESVMVKYDATVRNSINQVVQLRYGEDG DATVRNSINQVVQLRYGEDGLAGESVEFQN R N S L R Y 0 1 2 0 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1169.6517 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 881 890 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 3.0618E-05 143.01 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 2 1.079 1.0162 15.203 9 Median 1.1869 1.1465 17.071 2 0 Median 1.1766 1.0218 13.214 2 0 Median 0.99154 1.0807 NaN 1 0 Median 1.501 1.3177 NaN 1 0 Median 0.83696 0.85276 NaN 1 0 Median 1.1478 0.95495 8.7758 2 2 Median 75438000 35965000 39473000 19844000 7035800 12808000 9702000 4245000 5457000 13966000 6667000 7299400 2068900 787780 1281100 25148000 15088000 10060000 4708800 2141300 2567500 26404 486 27813 140509;140510;140511;140512;140513;140514;140515;140516;140517;140518 141439;141440;141441;141442;141443;141444;141445;141446;141447;141448 141441 10 NSIPEPIDPLFK YWKKVLPLLKIIKKKNSIPEPIDPLFKHFH KKKNSIPEPIDPLFKHFHSVDIQASEIVEY K N S F K H 0 0 1 1 0 0 1 0 0 2 1 1 0 1 3 1 0 0 0 0 0 0 12 0 1368.7289 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 620 631 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.00029876 82.749 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.65519 0.66813 6.8206 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62185 0.67359 7.709 4 1 Median 0.72357 0.67745 5.1218 2 0 Median 0.60647 0.63305 8.7387 2 0 Median 0.7534 0.65034 NaN 1 0 Median 83989000 50329000 33660000 0 0 0 0 0 0 77141000 46498000 30643000 3120100 1814600 1305500 3383700 1825600 1558100 344230 190950 153280 26405 2401;525;3762 27814 140519;140520;140521;140522;140523;140524;140525;140526;140527 141449;141450;141451;141452;141453;141454;141455;141456;141457;141458;141459;141460;141461;141462 141450 14 NSIQFTDGYEVK MQTVGVHSIVQQLHRNSIQFTDGYEVKEDI LHRNSIQFTDGYEVKEDIGVGSYSVCKRCI R N S V K E 0 0 1 1 0 1 1 1 0 1 0 1 0 1 0 1 1 0 1 1 0 0 12 0 1399.662 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 385 396 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0032083 70.977 By MS/MS 1 1.5852 1.4548 NaN 1 Median 1.5852 1.4548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7511200 3044700 4466500 7511200 3044700 4466500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26406 581 27815 140528 141463 141463 1 NSITSYFGAAGR LNNLADQELQLNHLKNSITSYFGAAGRIAC HLKNSITSYFGAAGRIACGEKYRVLARRVT K N S G R I 2 1 1 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1242.5993 Q9Y483 Q9Y483 550 561 MTF2 Metal-response element-binding transcription factor 2 yes yes 2 0.011873 42.336 By MS/MS By MS/MS 1 2 1.0313 1.0386 24.296 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72541 0.76392 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0949 1.1321 12.197 2 0 Median NaN NaN NaN 0 0 Median 8663100 4525800 4137200 0 0 0 0 0 0 4109600 2238300 1871300 0 0 0 4553500 2287500 2266000 0 0 0 26407 4439 27816 140529;140530;140531 141464;141465 141465 2 NSIVNSQPPEK LGLILLNEKYFSDLRNSIVNSQPPEKQQAM SDLRNSIVNSQPPEKQQAMHLCFENLMEGI R N S E K Q 0 0 2 0 0 1 1 0 0 1 0 1 0 0 2 2 0 0 0 1 0 0 11 0 1211.6146 E7ESC6;Q9UIA9 E7ESC6 1022 1032 XPO7 Exportin-7 yes no 2 0.00021918 74.162 By matching By MS/MS 1 1 0.92909 0.87655 14.241 2 Median 0.95363 0.96941 NaN 1 0 Median 0.90519 0.79258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3153900 1514500 1639400 695810 281610 414200 2458100 1232900 1225200 0 0 0 0 0 0 0 0 0 0 0 0 26408 885 27817 140532;140533 141466;141467 141466 2 NSKIEISELNR EELQITAGRHGDSVRNSKIEISELNRVIQR DSVRNSKIEISELNRVIQRLRSEIDNVKKQ R N S N R V 0 1 2 0 0 0 2 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 11 1 1301.6939 P04264;CON__P04264 P04264 393 403 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 9.061E-36 179.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 6 6 4 0.1691 0.18427 126.04 22 Median 0.091113 0.093142 71.653 4 4 Median 0.47459 0.43024 106.89 2 2 Median 0.16947 0.19632 67.297 3 3 Median 0.26692 0.23628 178.39 5 5 Median 0.15109 0.16617 117.34 5 5 Median 0.34985 0.31077 189.66 3 3 Median 165290000 147600000 17690000 29241000 27520000 1721600 7996200 4535000 3461300 17519000 15673000 1845500 13047000 11188000 1858600 71626000 66020000 5606200 25860000 22663000 3197000 + 26409 1848 27818 140534;140535;140536;140537;140538;140539;140540;140541;140542;140543;140544;140545;140546;140547;140548;140549;140550;140551;140552;140553;140554;140555;140556;140557;140558;140559 141468;141469;141470;141471;141472;141473;141474;141475;141476;141477;141478;141479;141480;141481;141482;141483;141484;141485;141486;141487;141488;141489;141490;141491;141492;141493 141477 26 NSLDCEIVSAK ISINKTDGCHAYLSKNSLDCEIVSAKSSEM YLSKNSLDCEIVSAKSSEMNVLIPTEGGDF K N S A K S 1 0 1 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1234.5864 Q01518 Q01518 423 433 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.00027281 73.067 By MS/MS 2 0.97474 0.8287 NaN 1 Median NaN NaN NaN 0 0 Median 0.97474 0.8287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6891800 3647200 3244600 0 0 0 6891800 3647200 3244600 0 0 0 0 0 0 0 0 0 0 0 0 26410 2686 27819 140560;140561 141494;141495 141495 2 NSLDSFGGR RFGGSYGGRFESSYRNSLDSFGGRNQGGSS FESSYRNSLDSFGGRNQGGSSWEAPYSRSK R N S G R N 0 1 1 1 0 0 0 2 0 0 1 0 0 1 0 2 0 0 0 0 0 0 9 0 951.44101 Q5BKZ1 Q5BKZ1 117 125 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.00055412 114.89 By MS/MS By matching 1 1 1.382 1.2683 7.19 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1695 1.2054 NaN 1 0 Median 1.6329 1.3345 NaN 1 0 Median 8305300 3206500 5098900 0 0 0 0 0 0 0 0 0 0 0 0 7449400 2877400 4572000 855900 329050 526840 26411 3042 27820 140562;140563 141496 141496 1 NSLESYAFNMK YKAEDEKQRDKVSSKNSLESYAFNMKATVE VSSKNSLESYAFNMKATVEDEKLQGKINDE K N S M K A 1 0 2 0 0 0 1 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 11 0 1302.5914 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 540 550 HSPA8 Heat shock cognate 71 kDa protein yes no 2 0.00011219 125.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 5 4 4 10 3 1.1659 1.038 12.625 35 Median 1.1997 1.1114 12.024 9 2 Median 1.1659 0.98094 5.6973 5 0 Median 1.0664 1.0319 17.439 4 0 Median 1.1801 1.0134 21.408 4 0 Median 1.0977 1.0832 10.665 10 2 Median 1.2536 1.0077 8.4655 3 0 Median 1179400000 535700000 643660000 457640000 202900000 254740000 270500000 122090000 148410000 324180000 151760000 172420000 16785000 7775900 9009300 104780000 48840000 55940000 5471800 2331900 3139900 26412 1950 27821;27822 140564;140565;140566;140567;140568;140569;140570;140571;140572;140573;140574;140575;140576;140577;140578;140579;140580;140581;140582;140583;140584;140585;140586;140587;140588;140589;140590;140591;140592;140593;140594;140595;140596;140597;140598 141497;141498;141499;141500;141501;141502;141503;141504;141505;141506;141507;141508;141509;141510;141511;141512;141513;141514;141515;141516;141517;141518;141519;141520;141521;141522;141523;141524;141525;141526;141527;141528 141500 731 32 NSLGGDVLFVGK LEEVYPDLTPEETRRNSLGGDVLFVGKHHP TRRNSLGGDVLFVGKHHPLHDFILELYQTG R N S G K H 0 0 1 1 0 0 0 3 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1204.6452 Q9H0D6 Q9H0D6 677 688 XRN2 5-3 exoribonuclease 2 yes yes 2 0.0070497 38.567 By MS/MS By MS/MS 1 1 1.2771 1.211 23.15 2 Median NaN NaN NaN 0 0 Median 1.6317 1.4263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99963 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median 11948000 5224900 6723000 0 0 0 5412700 2110900 3301800 0 0 0 0 0 0 6535300 3114100 3421200 0 0 0 26413 3924 27823 140599;140600 141529;141530 141530 2 NSLGGFASTQDTTVALK TSEGIPIMRWLSRQRNSLGGFASTQDTTVA LGGFASTQDTTVALKALSEFAALMNTERTN R N S L K A 2 0 1 1 0 1 0 2 0 0 2 1 0 1 0 2 3 0 0 1 0 0 17 0 1708.8632 Q6YHK3 Q6YHK3 1173 1189 CD109 CD109 antigen yes yes 2 4.0032E-08 97.551 By MS/MS By MS/MS 1 1 1.2034 1.2111 7.4754 2 Median 1.188 1.1488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.219 1.2769 NaN 1 0 Median NaN NaN NaN 0 0 Median 17489000 7735400 9753600 11543000 5091900 6451100 0 0 0 0 0 0 0 0 0 5946000 2643500 3302500 0 0 0 26414 3193 27824 140601;140602 141531;141532;141533 141532 3 NSLISSLEEEVSILNR WKAQVARGRQEAERKNSLISSLEEEVSILN SLISSLEEEVSILNRQVLEKEGESKELKRL K N S N R Q 0 1 2 0 0 0 3 0 0 2 3 0 0 0 0 4 0 0 0 1 0 0 16 0 1801.9422 A0A087WY61;Q14980 Q14980 1224 1239 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.047238 22.474 By MS/MS 1 0.90478 1.004 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90478 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1851300 897420 953880 0 0 0 0 0 0 1851300 897420 953880 0 0 0 0 0 0 0 0 0 26415 2905;77 27825 140603 141534 141534 1 NSLLAGGDDDTMSVISGISSR SLRREDVWLPLMSYRNSLLAGGDDDTMSVI GDDDTMSVISGISSRGSTVRSKKSKPSTGK R N S S R G 1 1 1 3 0 0 0 3 0 2 2 0 1 0 0 5 1 0 0 1 0 0 21 0 2093.9899 Q8N3U4 Q8N3U4 1046 1066 STAG2 Cohesin subunit SA-2 yes yes 2;3 8.1561E-12 78.373 By matching By MS/MS By MS/MS 1 3 3 0.95695 1.043 14.405 7 Median 0.94924 0.95861 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97887 1.0766 16.767 3 1 Plateau NaN NaN NaN 0 0 Median 1.0402 1.1033 14.314 3 0 Median NaN NaN NaN 0 0 Median 15898000 8361100 7537100 541910 273230 268680 0 0 0 12228000 6571500 5656300 0 0 0 3128600 1516400 1612200 0 0 0 26416 3369 27826;27827 140604;140605;140606;140607;140608;140609;140610 141535;141536;141537;141538;141539 141536 1718 5 NSLLIAPMPTASTAQILGNNESIEPYTSNIYTR DWKVLKEKIAKYGIRNSLLIAPMPTASTAQ NNESIEPYTSNIYTRRVLSGEFQIVNPHLL R N S T R R 3 1 4 0 0 1 2 1 0 4 3 0 1 0 3 4 4 0 2 0 0 0 33 0 3578.7927 P23921;E9PL69 P23921 595 627 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 3 0.016832 14.159 By MS/MS By matching 2 1 0.73708 0.73375 16.075 3 Median 0.67103 0.65125 16.867 2 0 Median NaN NaN NaN 0 0 Median 0.76008 0.7849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11904000 6985900 4917900 11639000 6808400 4830300 0 0 0 265080 177520 87565 0 0 0 0 0 0 0 0 0 26417 2121 27828 140611;140612;140613 141540;141541 141540 2 NSLLTILDQLQR KDNRVTTLTTHAGIRNSLLTILDQLQRCQK GIRNSLLTILDQLQRCQKSLNEFLEEKRSA R N S Q R C 0 1 1 1 0 2 0 0 0 1 4 0 0 0 0 1 1 0 0 0 0 0 12 0 1412.7987 Q8NCM8 Q8NCM8 1399 1410 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 3.2995E-05 96.342 By MS/MS By MS/MS 2 2 0.84822 0.84879 31.643 4 Median 0.84822 0.84879 1.8059 2 0 Median 1.0018 0.84154 54.771 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8770000 4085300 4684800 3775100 2067500 1707500 4995000 2017700 2977300 0 0 0 0 0 0 0 0 0 0 0 0 26418 3418 27829 140614;140615;140616;140617 141542;141543;141544;141545 141544 4 NSLPDTVQIR LVPNNTTDQELQHIRNSLPDTVQIRRVEER LQHIRNSLPDTVQIRRVEERLSALGNVTTC R N S I R R 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1141.6091 P56537;B7ZBH1 P56537 86 95 EIF6 Eukaryotic translation initiation factor 6 yes no 2 4.5309E-07 160.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 2 1.02 0.91232 28.783 9 Median 0.98412 1.07 24.359 2 0 Median 1.1374 0.96004 7.2107 2 0 Median 1.2413 1.1922 NaN 1 0 Median 1.0193 0.84548 NaN 1 0 Median 0.87213 0.88577 22.141 2 0 Median 0.61485 0.47905 NaN 1 0 Median 197250000 98632000 98615000 67187000 34340000 32847000 27495000 12470000 15025000 23714000 11710000 12004000 3960200 1972500 1987800 73583000 37281000 36302000 1307400 858630 448750 26419 2513 27830 140618;140619;140620;140621;140622;140623;140624;140625;140626;140627 141546;141547;141548;141549;141550;141551;141552;141553;141554;141555;141556;141557 141547 12 NSLPELSR WHQTGGEVTISVYAKNSLPELSRVEANSTL TISVYAKNSLPELSRVEANSTLLNVHIVFE K N S S R V 0 1 1 0 0 0 1 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 8 0 914.48214 Q9UHD1;E9PHZ2 Q9UHD1 249 256 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.0035928 86.794 By MS/MS By matching 1 1 0.73836 0.62608 20.182 2 Median NaN NaN NaN 0 0 Median 0.82823 0.72211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65824 0.54281 NaN 1 0 Median 9506000 5554800 3951300 0 0 0 6711500 3853100 2858500 0 0 0 0 0 0 0 0 0 2794500 1701700 1092800 26420 4275 27831 140628;140629 141558 141558 1 NSLQEQQEEEEEAR KLNLSSRIRQLEEEKNSLQEQQEEEEEARK KNSLQEQQEEEEEARKNLEKQVLALQSQLA K N S A R K 1 1 1 0 0 3 6 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1717.7391 P35580 P35580 1346 1359 MYH10 Myosin-10 yes yes 2 2.9559E-12 180.97 By MS/MS 1 1.2426 1.0552 NaN 1 Median NaN NaN NaN 0 0 Median 1.2426 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221700 1465500 1756200 0 0 0 3221700 1465500 1756200 0 0 0 0 0 0 0 0 0 0 0 0 26421 2245 27832 140630 141559;141560 141560 2 NSLQEQQEEEEEARK KLNLSSRIRQLEEEKNSLQEQQEEEEEARK NSLQEQQEEEEEARKNLEKQVLALQSQLAD K N S R K N 1 1 1 0 0 3 6 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 15 1 1845.8341 P35580 P35580 1346 1360 MYH10 Myosin-10 yes yes 3 4.8102E-10 103.14 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0195 1.0026 36.979 4 Median 0.8494 0.8691 NaN 1 0 Median 1.2238 1.1565 NaN 1 0 Median 0.45536 0.54388 NaN 1 0 Median 1.2636 1.2199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11417000 5855600 5561700 1903600 919430 984170 5185800 2197200 2988600 3250300 2283700 966600 1077500 455180 622360 0 0 0 0 0 0 26422 2245 27833 140631;140632;140633;140634 141561;141562;141563;141564 141563 4 NSLRVEGDNIYVR SPTKAPHLQLIEGKKNSLRVEGDNIYVRHS KKNSLRVEGDNIYVRHSNLMLEELDKAQED K N S V R H 0 2 2 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 2 0 0 13 1 1533.79 O43491;Q6ZSX4;H0Y5B0;E9PMV8;E9PPC9 O43491 613 625 EPB41L2 Band 4.1-like protein 2 yes no 3 5.7165E-07 117.2 By MS/MS 1 0.75918 0.92332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75918 0.92332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6325600 3454000 2871700 0 0 0 0 0 0 6325600 3454000 2871700 0 0 0 0 0 0 0 0 0 26423 1573 27834 140635 141565 141565 1 NSLTSKDPDIK GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ LQIKNSLTSKDPDIKAQYQQRWLAIDANAR K N S I K A 0 0 1 2 0 0 0 0 0 1 1 2 0 0 1 2 1 0 0 0 0 0 11 1 1216.6299 Q14974;J3QR48 Q14974 63 73 KPNB1 Importin subunit beta-1 yes no 2;3 0.00080252 112.83 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 4 2 2 2 3 3 0.96597 1.026 11.67 16 Median 0.95825 1 10.145 4 0 Median 1.1915 1.1534 9.901 2 0 Median 0.9022 1.0308 1.8959 2 0 Median 1.0778 1.0529 4.1712 2 0 Median 0.89107 0.99957 11.84 3 0 Plateau 1.1719 1.065 18.299 3 0 Median 53110000 25375000 27735000 14750000 7253700 7496100 13089000 5958000 7130700 13204000 6562300 6642000 3122500 1449900 1672600 7255400 3426300 3829000 1689200 724270 964910 26424 2904 27835 140636;140637;140638;140639;140640;140641;140642;140643;140644;140645;140646;140647;140648;140649;140650;140651 141566;141567;141568;141569;141570;141571;141572;141573;141574;141575;141576;141577 141574 12 NSLVDKPFAAK DRHWHEACFHCSQCRNSLVDKPFAAKEDQL SQCRNSLVDKPFAAKEDQLLCTDCYSNEYS R N S A K E 2 0 1 1 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1188.6503 Q14192 Q14192 73 83 FHL2 Four and a half LIM domains protein 2 yes yes 2;3 0.0035728 63.216 By MS/MS By matching By MS/MS 1 1 1 0.98405 0.94468 54.454 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3228 1.3884 NaN 1 0 Median 0.73203 0.64278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6205300 2242700 3962600 1476100 0 1476100 0 0 0 2203500 842620 1360900 2525700 1400100 1125600 0 0 0 0 0 0 26425 2863 27836 140652;140653;140654 141578;141579;141580 141580 3 NSLYDMAR YGHESELSQASAAARNSLYDMARYEREQYA QASAAARNSLYDMARYEREQYADRARYSAF R N S A R Y 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 8 0 968.43857 Q9BQ04;Q9BWF3;E9PB51 Q9BWF3 342 349 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0034431 95.909 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.1493 1.0197 12.881 6 Median 0.8585 0.85439 NaN 1 0 Median 1.1664 0.99406 NaN 1 0 Median 1.1245 1.2248 NaN 1 0 Median 1.2052 1.0139 4.4087 2 0 Median 1.1325 1.1622 NaN 1 0 Median NaN NaN NaN 0 0 Median 24540000 11305000 13235000 3735100 2068300 1666800 1618000 701420 916570 10083000 4520800 5562200 1673400 792130 881270 7430400 3222200 4208200 0 0 0 26426 3870;3780 27837 140655;140656;140657;140658;140659;140660 141581;141582;141583;141584;141585 141582 5 NSMFHNR HEEMLKDEVRTLTYRNSMFHNRHLFKDKVV EVRTLTYRNSMFHNRHLFKDKVVLDVGSGT R N S N R H 0 1 2 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 7 0 904.39737 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4;E9PMZ2;E9PMW9 E9PKG1 32 38 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 0.026776 52.683 By matching By MS/MS By matching 1 1 1 1.1309 1.0441 7.2704 3 Median 1.1314 1.1357 NaN 1 0 Median 1.1309 0.98262 NaN 1 0 Median 1.0122 1.0441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1056600 479290 577300 124960 55665 69293 794340 352800 441550 137290 70832 66460 0 0 0 0 0 0 0 0 0 26427 947 27838 140661;140662;140663 141586;141587;141588 141586 3 NSMPASSFQQQK EKARAKKREAEEVYRNSMPASSFQQQKLRV VYRNSMPASSFQQQKLRVCEVCSAYLGLHD R N S Q K L 1 0 1 0 0 3 0 0 0 0 0 1 1 1 1 3 0 0 0 0 0 0 12 0 1351.619 A0A0A6YYJ8;Q9NQ29;A8MYV2;B8ZZ10;Q9Y383 A0A0A6YYJ8 241 252 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.00063919 62.823 By MS/MS By MS/MS By MS/MS 1 2 2 0.95175 0.94537 11.734 5 Median 0.83183 0.81009 NaN 1 0 Median 1.0899 0.93291 18.599 2 0 Median 0.91116 0.95942 2.0863 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8615800 4510600 4105300 1658200 912670 745570 3157600 1530100 1627600 3800000 2067900 1732100 0 0 0 0 0 0 0 0 0 26428 206;4407;4058 27839 140664;140665;140666;140667;140668 141589;141590;141591;141592;141593;141594;141595;141596;141597 141589 9 NSMTPNPGYQPSMNTSDMMGR QDAFNDGSDSTFQKRNSMTPNPGYQPSMNT PGYQPSMNTSDMMGRMSYEPNKDPYGSMRK R N S G R M 0 1 3 1 0 1 0 2 0 0 0 0 4 0 3 3 2 0 1 0 0 0 21 0 2314.9439 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1203 1223 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3 2.4262E-28 113.76 By MS/MS By matching 2 1 0.57622 0.63522 12.442 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55755 0.61374 4.8651 2 1 Median 0.86282 0.75496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11471000 7764400 3706600 0 0 0 0 0 0 11029000 7526000 3503500 441560 238380 203180 0 0 0 0 0 0 26429 1480 27840 140669;140670;140671 141598;141599 141599 2 NSNILEDLETLR YQPMEKLYMVLITTKNSNILEDLETLRLFS TTKNSNILEDLETLRLFSRVIPEYCRALEE K N S L R L 0 1 2 1 0 0 2 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1415.7256 B0YIW6;P48444;Q6P1Q5 B0YIW6 114 125 ARCN1 Coatomer subunit delta yes no 2 4.9664E-06 156.48 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 5 1 1 1 3 1.2228 1.0859 35.794 14 Median 1.3872 1.3562 35.603 4 1 Median 1.1717 0.99999 18.231 4 0 Median 1.2285 1.2509 NaN 1 0 Median 1.0188 0.88808 NaN 1 0 Median 2.8298 2.8491 NaN 1 0 Median 1.2171 0.98791 14.86 3 0 Median 41693000 19739000 21954000 12086000 5105900 6980100 19527000 10431000 9095900 7090100 2927600 4162400 441550 219860 221690 506190 113360 392830 2042800 941690 1101100 26430 561 27841 140672;140673;140674;140675;140676;140677;140678;140679;140680;140681;140682;140683;140684;140685;140686 141600;141601;141602;141603;141604;141605;141606;141607;141608;141609;141610 141608 11 NSNLEIPDTLQELFAR EFVEKLKEKFSSALRNSNLEIPDTLQELFA SNLEIPDTLQELFARYRVLAIGDEKDQTRK R N S A R Y 1 1 2 1 0 1 2 0 0 1 3 0 0 1 1 1 1 0 0 0 0 0 16 0 1858.9425 Q12789 Q12789 1384 1399 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.049228 22.232 By matching By matching By MS/MS 1 1 2 1.0233 0.97317 20.872 4 Median 1.1972 1.1901 NaN 1 0 Median 1.1157 0.974 NaN 1 0 Median 0.79146 0.83527 21.488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193000 1146600 1046400 468960 253020 215940 601080 285270 315800 1123000 608340 514640 0 0 0 0 0 0 0 0 0 26431 2758 27842 140687;140688;140689;140690 141611 141611 1 NSNLVGAAHEELQQSR TYSAKLDNARQSAERNSNLVGAAHEELQQS SNLVGAAHEELQQSRIRIDSLSAQLSQLQK R N S S R I 2 1 2 0 0 2 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1751.8551 P02545;Q3BDU5 P02545 281 296 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 2.3557E-60 240.42 By MS/MS By MS/MS By MS/MS By MS/MS 7 9 8 10 1.1883 1.0909 19.817 34 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1144 1.1157 4.1453 7 1 Median 1.4498 1.2308 34.241 9 0 Median 1.0343 1.0482 8.9048 8 0 Median 1.3842 1.0988 14.711 10 0 Median 2414000000 1083200000 1330800000 0 0 0 0 0 0 640740000 295000000 345730000 400580000 151190000 249390000 1143300000 542520000 600820000 229350000 94482000 134870000 26432 1834;3010 27843 140691;140692;140693;140694;140695;140696;140697;140698;140699;140700;140701;140702;140703;140704;140705;140706;140707;140708;140709;140710;140711;140712;140713;140714;140715;140716;140717;140718;140719;140720;140721;140722;140723;140724 141612;141613;141614;141615;141616;141617;141618;141619;141620;141621;141622;141623;141624;141625;141626;141627;141628;141629;141630;141631;141632;141633;141634;141635;141636;141637;141638;141639;141640;141641;141642;141643;141644;141645;141646;141647;141648;141649;141650;141651;141652;141653;141654;141655;141656;141657;141658;141659;141660;141661;141662;141663;141664;141665;141666;141667;141668;141669;141670;141671;141672;141673;141674;141675;141676;141677;141678 141623 66 NSNPALNDNLEK TAGLDIFAKFSAYIKNSNPALNDNLEKGLL YIKNSNPALNDNLEKGLLKALKVLDNYLTS K N S E K G 1 0 4 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1327.6368 O00299 O00299 120 131 CLIC1 Chloride intracellular channel protein 1 yes yes 2 3.1134E-10 143.5 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 0.92796 0.80251 7.0776 8 Median 0.92871 0.84066 8.6098 3 0 Plateau 0.93384 0.7841 1.2405 2 1 Median 0.88278 0.82744 NaN 1 0 Median 1.0236 0.85526 6.9624 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118240000 62353000 55882000 82758000 43911000 38847000 16591000 8589000 8002400 14222000 7471600 6750700 4663800 2381600 2282200 0 0 0 0 0 0 26433 1456 27844 140725;140726;140727;140728;140729;140730;140731;140732;140733 141679;141680;141681;141682;141683;141684;141685;141686;141687;141688;141689;141690;141691;141692;141693 141690 15 NSPNNISGISNPPGTPR MNGSLGSGDIDGLPKNSPNNISGISNPPGT PNNISGISNPPGTPRDDGELGGNFLHSFQN K N S P R D 0 1 4 0 0 0 0 2 0 2 0 0 0 0 4 3 1 0 0 0 0 0 17 0 1720.8493 A0A087WVT6;Q9BWW4;Q9NW25 A0A087WVT6 311 327 SSBP3 Single-stranded DNA-binding protein 3 yes no 2 1.6574E-14 114.82 By MS/MS By MS/MS 1 2 0.64537 0.6931 18.9 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63788 0.6931 NaN 1 1 Median 0.76603 0.66467 26.509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9319800 5444300 3875500 0 0 0 0 0 0 7661200 4587200 3074000 1658500 857070 801450 0 0 0 0 0 0 26434 45 27845 140734;140735;140736 141694;141695 141694 2 NSPVEAVFSYLTGK TATPQIEEEVSLTQKNSPVEAVFSYLTGKR KNSPVEAVFSYLTGKRISEACSLAQQSGDH K N S G K R 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 1 0 1 2 0 0 14 0 1510.7668 P52948;A0A3B3ITD8;H7C3P6 P52948 1328 1341 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 5.8839E-07 97.911 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 2 1.0613 0.99527 9.2163 8 Median NaN NaN NaN 0 0 Median 1.2099 1.0998 NaN 1 0 Median 0.8865 0.95744 1.2199 2 0 Median 1.1516 0.98999 5.4455 2 0 Median 0.99877 1.0257 NaN 1 0 Median 1.0898 0.93804 19.005 2 0 Median 13147000 6733800 6412700 0 0 0 350610 152400 198210 10009000 5308900 4700100 1846500 809250 1037300 717460 360100 357360 222910 103150 119760 26435 2462 27846 140737;140738;140739;140740;140741;140742;140743;140744 141696;141697;141698;141699 141697 4 NSQDDYDEER ERYDECLAVYRDLVRNSQDDYDEERKTNLS RDLVRNSQDDYDEERKTNLSAVVAAQSNWE R N S E R K 0 1 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1269.4746 O76094;D6RDY6;R4GNC1 O76094 138 147 SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0034879 56.563 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1708 1.0644 10.997 4 Median 1.103 1.094 NaN 1 0 Median 1.1863 1.0355 NaN 1 0 Median 1.2044 1.2686 NaN 1 0 Median 1.1554 0.98326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4217900 1782600 2435300 1463600 708680 754890 806810 308250 498560 1455400 538560 916800 492190 227150 265040 0 0 0 0 0 0 26436 1721 27847 140745;140746;140747;140748 141700;141701;141702;141703;141704 141700 5 NSQFAGGPLGNPNTTAK SVLQELKGLQEFLDRNSQFAGGPLGNPNTT QFAGGPLGNPNTTAKVQQRLIGFMRPENGN R N S A K V 2 0 3 0 0 1 0 3 0 0 1 1 0 1 2 1 2 0 0 0 0 0 17 0 1672.8169 O75694;E9PF10 O75694 724 740 NUP155 Nuclear pore complex protein Nup155 yes no 2 3.2131E-11 109 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.87183 0.77243 19.302 5 Median 0.5878 0.58163 NaN 1 0 Median 0.78338 0.67098 NaN 1 0 Median 0.87183 0.92872 NaN 1 0 Median 1.015 0.88049 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92966 0.77243 NaN 1 0 Median 40217000 20615000 19602000 3009200 2018100 991130 4633000 2500000 2133000 25364000 12621000 12744000 6198200 2927900 3270300 0 0 0 1011900 548390 463480 26437 1692 27848 140749;140750;140751;140752;140753 141705;141706;141707;141708;141709;141710;141711;141712 141708 8 NSQFDFLR QGAQFEIMLKAKQARNSQFDFLRFDHYLNP LKAKQARNSQFDFLRFDHYLNPYYKFIQKA R N S L R F 0 1 1 1 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 8 0 1025.493 Q12872 Q12872 237 244 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 2 0.012659 54.549 By MS/MS By matching 1 1 1.1987 1.1834 9.1264 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1484 1.2623 NaN 1 0 Median 1.2512 1.1094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3800900 1613900 2187000 0 0 0 0 0 0 3641400 1535100 2106300 159470 78718 80749 0 0 0 0 0 0 26438 2765 27849 140754;140755 141713 141713 1 NSQGEEVAQR QNSWGTGEDVKVILKNSQGEEVAQRSTVFK KVILKNSQGEEVAQRSTVFKTTIPEEEEEE K N S Q R S 1 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1116.516 P20700 P20700 533 542 LMNB1 Lamin-B1 yes yes 2 0.0079033 47.198 By matching By matching By MS/MS By matching 1 2 5 1 0.91974 0.95788 17.88 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91974 0.95788 NaN 1 0 Median 1.4972 1.2588 3.7668 2 0 Median 0.85046 0.86228 7.7707 5 0 Median 1.4131 1.1971 NaN 1 0 Median 4016900 2137100 1879800 0 0 0 0 0 0 1020000 562030 458000 200270 83955 116310 2640700 1428200 1212500 155880 62892 92988 26439 2084 27850 140756;140757;140758;140759;140760;140761;140762;140763;140764 141714;141715 141715 2 NSQGSEMFGDDDKRK KTIADLELHYQEFIRNSQGSEMFGDDDKRK NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL R N S R K I 0 1 1 3 0 1 1 2 0 0 0 2 1 1 0 2 0 0 0 0 0 0 15 2 1712.7424 P15924 P15924 593 607 DSP Desmoplakin yes yes 3 0.0043695 27.335 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.89816 0.95598 26.026 5 Median NaN NaN NaN 0 0 Median 1.2944 1.379 NaN 1 0 Median 0.70202 0.9275 NaN 1 0 Median 0.96523 1.0535 13.742 2 0 Median 0.58688 0.68993 NaN 1 0 Median NaN NaN NaN 0 0 Median 4247000 2088400 2158600 0 0 0 975100 385950 589150 962710 470360 492350 811010 384390 426620 1498200 847750 650470 0 0 0 26440 2021 27851 140765;140766;140767;140768;140769 141716;141717;141718;141719 141717 4 NSQLGIFSSSEK KVSLFGKRTSGHGSRNSQLGIFSSSEKIKD GSRNSQLGIFSSSEKIKDPRPLNDKAFIQQ R N S E K I 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 4 0 0 0 0 0 0 12 0 1295.6357 O14777 O14777 68 79 NDC80 Kinetochore protein NDC80 homolog yes yes 2 0.0052259 60.434 By MS/MS 1 1.007 1.059 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 1.059 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5314100 2656800 2657300 0 0 0 0 0 0 5314100 2656800 2657300 0 0 0 0 0 0 0 0 0 26441 1495 27852 140770 141720 141720 1 NSQSFFSGLFGGSSK AEAMALLAEAERKVKNSQSFFSGLFGGSSK NSQSFFSGLFGGSSKIEEACEIYARAANMF K N S S K I 0 0 1 0 0 1 0 3 0 0 1 1 0 3 0 5 0 0 0 0 0 0 15 0 1548.7209 M0R0Y2;P54920;M0R2M1 M0R0Y2 23 37 NAPA Alpha-soluble NSF attachment protein yes no 2 3.0285E-08 153.74 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 2 1.2702 1.1391 17.731 7 Median 1.1149 1.0117 NaN 1 0 Median 1.3369 1.1237 17.643 2 0 Median 1.2702 1.2405 NaN 1 0 Median 1.3309 1.1391 NaN 1 0 Median 1.3052 1.321 31.596 2 0 Median NaN NaN NaN 0 0 Median 51612000 23535000 28077000 29928000 14124000 15804000 19513000 8444800 11069000 1069700 488220 581440 474990 215520 259470 626580 262660 363920 0 0 0 26442 1430 27853 140771;140772;140773;140774;140775;140776;140777 141721;141722;141723;141724 141723 4 NSRPEANEALER TAGMDIFAKFSAYIKNSRPEANEALERGLL YIKNSRPEANEALERGLLKTLQKLDEYLNS K N S E R G 2 2 2 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 12 1 1384.6695 Q9Y696 Q9Y696 131 142 CLIC4 Chloride intracellular channel protein 4 yes yes 2;3 1.2221E-06 140.01 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 0.90895 0.8477 10.915 10 Median 0.80286 0.85821 16.357 4 0 Median 0.92431 0.78498 2.7529 2 0 Median 0.87044 0.90251 6.5053 2 0 Median 0.9471 0.84805 4.6947 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47090000 24462000 22628000 27373000 14505000 12868000 10899000 5288000 5610900 7611100 4109500 3501600 1206700 558950 647750 0 0 0 0 0 0 26443 4483 27854 140778;140779;140780;140781;140782;140783;140784;140785;140786;140787 141725;141726;141727;141728;141729;141730;141731;141732;141733;141734;141735;141736;141737 141729 13 NSSALHSLLKR EHDYGLFHLKSSLRKNSSALHSLLKRVVST SLRKNSSALHSLLKRVVSTFSKDTGELASS K N S K R V 1 1 1 0 0 0 0 0 1 0 3 1 0 0 0 3 0 0 0 0 0 0 11 1 1224.6939 Q69YN4 Q69YN4 1371 1381 KIAA1429 Protein virilizer homolog yes yes 3 0.00039468 57.836 By MS/MS By matching 1 1 0.8983 1.0091 35.416 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0816 1.2962 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74608 0.78553 NaN 1 0 Median NaN NaN NaN 0 0 Median 6582000 3247200 3334900 0 0 0 0 0 0 4673600 2365200 2308400 0 0 0 1908400 881940 1026500 0 0 0 26444 3130 27855 140788;140789 141738 141738 1 NSSHAGAFVIVTEEAIAK GSLTSVEFCGGTHLRNSSHAGAFVIVTEEA HAGAFVIVTEEAIAKGIRRIVAVTGAEAQK R N S A K G 4 0 1 0 0 0 2 1 1 2 0 1 0 1 0 2 1 0 0 2 0 0 18 0 1842.9476 P49588;H3BPK7 P49588 730 747 AARS Alanine--tRNA ligase, cytoplasmic yes no 2;3 0.00092397 35.737 By MS/MS By matching 2 1 1.2163 1.1881 18.437 3 Median 1.2138 1.1859 0.26913 2 0 Median 1.8546 1.632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12129000 6080800 6047800 10304000 5391600 4912200 1824800 689140 1135700 0 0 0 0 0 0 0 0 0 0 0 0 26445 2385 27856 140790;140791;140792 141739;141740;141741 141739 3 NSSQFFQSYVER YKKKYSDADIEPFLKNSSQFFQSYVERGLR FLKNSSQFFQSYVERGLRVIEMEREGKGRI K N S E R G 0 1 1 0 0 2 1 0 0 0 0 0 0 2 0 3 0 0 1 1 0 0 12 0 1490.679 Q14008;H0YDX5 Q14008 1871 1882 CKAP5 Cytoskeleton-associated protein 5 yes no 2 1.6791E-15 192.12 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 2 1.121 0.98863 34.804 12 Median 0.93341 0.89853 7.8979 2 0 Median 0.96505 0.82436 63.838 2 0 Median 1.1886 1.2957 28.802 3 0 Median 0.9022 0.78802 30.625 2 0 Median 1.5104 1.5864 NaN 1 0 Median 1.1488 0.97784 7.5977 2 0 Median 76656000 36025000 40631000 16030000 8385000 7645100 2134600 1065100 1069400 50369000 23120000 27249000 4289200 2028200 2260900 2902300 1002300 1900000 931220 424000 507220 26446 2850 27857 140793;140794;140795;140796;140797;140798;140799;140800;140801;140802;140803;140804 141742;141743;141744;141745;141746;141747;141748;141749 141745 8 NSSQGSVDVSMGHSSFISR EFEYLMKKRSVTIGRNSSQGSVDVSMGHSS GSVDVSMGHSSFISRRHLEIFTPPGGGGHG R N S S R R 0 1 1 1 0 1 0 2 1 1 0 0 1 1 0 7 0 0 0 2 0 0 19 0 1980.896 Q01167 Q01167 59 77 FOXK2 Forkhead box protein K2 yes yes 3 8.421E-07 53.779 By MS/MS 1 1.3623 1.174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3623 1.174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430400 1411600 2018800 0 0 0 0 0 0 0 0 0 3430400 1411600 2018800 0 0 0 0 0 0 26447 2684 27858 140805 141750 141750 1 NSSTIIQNPVETPK STDNQRQQQLNDVVKNSSTIIQNPVETPKK KNSSTIIQNPVETPKKDYSLLPLLAAAPQV K N S P K K 0 0 2 0 0 1 1 0 0 2 0 1 0 0 2 2 2 0 0 1 0 0 14 0 1526.794 P38432 P38432 445 458 COIL Coilin yes yes 2 0.00010937 84.479 By MS/MS 1 0.29899 0.30095 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29899 0.30095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14823000 11579000 3243800 0 0 0 0 0 0 14823000 11579000 3243800 0 0 0 0 0 0 0 0 0 26448 2274 27859 140806 141751 141751 1 NSSTYWEGK HVRHTGKIKALKIHKNSSTYWEGKADMETL ALKIHKNSSTYWEGKADMETLQRIYGISFP K N S G K A 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 1 1 1 0 0 0 9 0 1070.4669 P26639 P26639 280 288 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00094944 88.948 By matching By MS/MS By matching By matching 1 1 1 1 1.2158 1.0055 15.478 4 Linear 1.0063 0.99918 NaN 1 0 Median 1.1576 1.0119 NaN 1 0 Median 1.1071 1.1764 NaN 1 0 Median 0.93011 0.80744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10693000 4791800 5901300 1693500 813030 880490 5338700 2123300 3215400 1995400 1108100 887260 1665400 747290 918110 0 0 0 0 0 0 26449 2147 27860 140807;140808;140809;140810 141752;141753 141753 2 NSSTYWEGKADMETLQR HVRHTGKIKALKIHKNSSTYWEGKADMETL STYWEGKADMETLQRIYGISFPDPKMLKEW K N S Q R I 1 1 1 1 0 1 2 1 0 0 1 1 1 0 0 2 2 1 1 0 0 0 17 1 2014.9055 P26639 P26639 280 296 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 8.4981E-06 57.197 By MS/MS 1 1.2391 1.2728 NaN 1 Median 1.2391 1.2728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11922000 4813400 7108700 11922000 4813400 7108700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26450 2147 27861 140811 141754 141754 1 NSSYFVEWIPNNVK SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT KNSSYFVEWIPNNVKTAVCDIPPRGLKMSA K N S V K T 0 0 3 0 0 0 1 0 0 1 0 1 0 1 1 2 0 1 1 2 0 0 14 0 1695.8257 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BUF5;K7ESM5;Q9BVA1 P68371 337 350 TUBB3;TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB6;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-6 chain;Tubulin beta-2B chain no no 2 4.8842E-11 124.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 4 6 4 5 1 1.0052 0.8929 24.9 29 Median 0.92884 0.85522 8.7929 9 2 Median 1.0016 0.85674 2.7 4 0 Median 0.94255 0.88771 28.057 6 0 Median 1.0869 0.98248 4.0154 4 0 Linear 1.5251 1.5235 15.034 5 0 Median 1.055 0.86193 NaN 1 0 Median 1329800000 665570000 664190000 1100100000 560120000 539960000 56753000 27321000 29432000 100770000 48988000 51781000 16373000 7663700 8709500 54647000 20871000 33776000 1147300 615660 531630 26451 2634;1887;3849;2844;1849;3838;216 27862 140812;140813;140814;140815;140816;140817;140818;140819;140820;140821;140822;140823;140824;140825;140826;140827;140828;140829;140830;140831;140832;140833;140834;140835;140836;140837;140838;140839;140840 141755;141756;141757;141758;141759;141760;141761;141762;141763;141764;141765;141766;141767;141768;141769;141770;141771;141772;141773;141774;141775;141776;141777;141778;141779;141780;141781;141782 141760 28 NSSYVHGGLDSNGKPADAVYGQK LLNQAPDMLHRFYGKNSSYVHGGLDSNGKP LDSNGKPADAVYGQKEIHRKVMSQNFTNCH K N S Q K E 2 0 2 2 0 1 0 4 1 0 1 2 0 0 1 3 0 0 2 2 0 0 23 1 2363.1142 Q13283;E5RIZ6;E5RIF8;E5RH42;E5RJU8;E5RI46 Q13283 37 59 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 3;4 1.5748E-23 101.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 4 0.92065 0.86452 11.199 9 Median 1.0372 0.96745 22.335 2 0 Median 0.95902 0.88438 4.0607 2 0 Median 0.80749 0.84577 NaN 1 0 Median 0.91207 0.87623 9.4793 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96272000 48919000 47353000 56681000 29066000 27615000 11886000 5668200 6217600 4660800 2432200 2228600 23045000 11752000 11293000 0 0 0 0 0 0 26452 2803 27863 140841;140842;140843;140844;140845;140846;140847;140848;140849 141783;141784;141785;141786;141787;141788;141789;141790;141791;141792;141793;141794 141784 12 NSSYVHGGVDASGKPQEAVYGQNDIHHK LLNKAPEYLHRFYGRNSSYVHGGVDASGKP KPQEAVYGQNDIHHKVLSLNFSECHTKIRH R N S H K V 2 0 2 2 0 2 1 4 3 1 0 2 0 0 1 3 0 0 2 3 0 0 28 1 2993.4016 Q9UN86;D6RAC7;D6RB17;D6RGJ4;D6RBM9;D6REX8;D6RBR0;D6RE13;D6RBW8 Q9UN86 37 64 G3BP2 Ras GTPase-activating protein-binding protein 2 yes no 4;5 7.3363E-09 41.423 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 1.0211 1.0039 24.296 12 Median 0.94776 0.88598 39.462 3 0 Median 1.0251 0.96224 16.507 4 1 Median 1.2777 1.3383 34.867 2 0 Median 1.0353 1.0066 4.4531 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71221000 34038000 37183000 31155000 15291000 15864000 16492000 8594900 7897400 10811000 3733400 7077200 12763000 6418600 6344300 0 0 0 0 0 0 26453 4341 27864 140850;140851;140852;140853;140854;140855;140856;140857;140858;140859;140860;140861 141795;141796;141797;141798;141799;141800;141801;141802;141803;141804;141805;141806;141807 141807 13 NSTFSEIFK GHASDRIIALDGDTKNSTFSEIFKKEHPDR LDGDTKNSTFSEIFKKEHPDRFIECYIAEQ K N S F K K 0 0 1 0 0 0 1 0 0 1 0 1 0 2 0 2 1 0 0 0 0 0 9 0 1071.5237 P29401;A0A0B4J1R6 P29401 344 352 TKT Transketolase yes no 2 0.024906 37.727 By MS/MS By matching By MS/MS 1 1 1 1.194 1.2538 15.742 3 Median 1.3195 1.2538 NaN 1 0 Median 1.1287 0.95689 NaN 1 0 Median 1.194 1.2598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17599000 8337600 9261800 7295900 3370400 3925400 5257900 2612800 2645100 5045600 2354300 2691300 0 0 0 0 0 0 0 0 0 26454 2173 27865 140862;140863;140864 141808;141809 141808 2 NSTFSEIFKK GHASDRIIALDGDTKNSTFSEIFKKEHPDR DGDTKNSTFSEIFKKEHPDRFIECYIAEQN K N S K K E 0 0 1 0 0 0 1 0 0 1 0 2 0 2 0 2 1 0 0 0 0 0 10 1 1199.6186 P29401;A0A0B4J1R6 P29401 344 353 TKT Transketolase yes no 2;3 0.0013167 71.349 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.1111 1.1205 13.511 8 Median 1.0426 0.95935 6.3304 3 2 Median 1.2159 1.134 11.48 2 1 Median 1.08 1.2084 2.9273 2 1 Median 1.5017 1.3866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 421860000 208200000 213660000 368070000 182860000 185200000 36508000 17216000 19292000 16924000 7993100 8931000 362450 125650 236800 0 0 0 0 0 0 26455 2173 27866 140865;140866;140867;140868;140869;140870;140871;140872 141810;141811;141812;141813;141814;141815;141816;141817;141818 141815 9 NSTFTEHLYR LPLGKFTVNLSGCPRNSTFTEHLYRIIQHL SGCPRNSTFTEHLYRIIQHLVPASFRLQMT R N S Y R I 0 1 1 0 0 0 1 0 1 0 1 0 0 1 0 1 2 0 1 0 0 0 10 0 1266.5993 Q9BTE3 Q9BTE3 399 408 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.0012088 67.563 By matching By MS/MS 1 1 1.1203 1.0268 13.525 2 Median 1.164 1.1299 NaN 1 0 Median 1.0783 0.93319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12745000 5854700 6889800 5284000 2304300 2979700 7460600 3550400 3910200 0 0 0 0 0 0 0 0 0 0 0 0 26456 3825 27867 140873;140874 141819 141819 1 NSTNLIQTPQIR QQIGQVNNAATLDLKNSTNLIQTPQIRLNT DLKNSTNLIQTPQIRLNTKDLKQQHPLILK K N S I R L 0 1 2 0 0 2 0 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1383.747 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 788 799 QSER1 Glutamine and serine-rich protein 1 yes no 2 0.00037947 134.68 By MS/MS 1 0.78129 0.86258 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78129 0.86258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4471100 2698500 1772600 0 0 0 0 0 0 4471100 2698500 1772600 0 0 0 0 0 0 0 0 0 26457 418 27868 140875 141820 141820 1 NSVEVALNK EKDFAAEVVHPGDLKNSVEVALNKLLDPIR HPGDLKNSVEVALNKLLDPIREKFNTPALK K N S N K L 1 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 0 972.52401 P54577;A0A0C4DGZ5 P54577 311 319 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00060486 110.12 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.3161 1.245 26.816 6 Median 1.1955 1.1263 NaN 1 0 Median 1.5557 1.3761 17.476 3 0 Median 1.4178 1.4329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84208 0.7113 NaN 1 0 Median 42843000 19101000 23742000 10201000 4616600 5584500 30432000 13569000 16863000 1012000 353750 658270 0 0 0 0 0 0 1197600 561330 636270 26458 2482 27869 140876;140877;140878;140879;140880;140881 141821;141822;141823;141824 141823 4 NSVPVTVAMVER GEDGDRVPRGLKGKKNSVPVTVAMVERWKQ GKKNSVPVTVAMVERWKQAAKQRLTPKLFH K N S E R W 1 1 1 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 4 0 0 12 0 1300.6809 Q9Y3T9 Q9Y3T9 145 156 NOC2L Nucleolar complex protein 2 homolog yes yes 2 5.6046E-05 94.692 By MS/MS By MS/MS By MS/MS 1 2 1 1.0871 1.123 15.834 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0955 1.1583 NaN 1 0 Median 1.1458 0.98092 23.447 2 0 Median 1.0787 1.0892 NaN 1 0 Median NaN NaN NaN 0 0 Median 55420000 22858000 32562000 0 0 0 0 0 0 30052000 11832000 18219000 5422600 2189500 3233100 19946000 8836300 11110000 0 0 0 26459 4433 27870 140882;140883;140884;140885 141825;141826;141827;141828;141829;141830 141828 6 NSVSNFLHSLER GVVCGALHVADVSLRNSVSNFLHSLERGQV SLRNSVSNFLHSLERGQVLPAHTLLNTVDV R N S E R G 0 1 2 0 0 0 1 0 1 0 2 0 0 1 0 3 0 0 0 1 0 0 12 0 1401.7001 Q13085 Q13085 646 657 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2;3 2.7607E-10 131.83 By MS/MS By matching 2 2 0.97827 0.90446 38.155 4 Median 0.62816 0.62695 54.284 2 1 Median 1.0638 0.91231 3.6794 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14546000 8890200 5655700 11540000 7328400 4211800 3005600 1561700 1443900 0 0 0 0 0 0 0 0 0 0 0 0 26460 2784 27871 140886;140887;140888;140889 141831;141832 141832 2 NSVSQISVLSGGK EGGTAAGAGLDSLHKNSVSQISVLSGGKAK HKNSVSQISVLSGGKAKCSQFCTTGMDGGM K N S G K A 0 0 1 0 0 1 0 2 0 1 1 1 0 0 0 4 0 0 0 2 0 0 13 0 1274.683 O15143 O15143 327 339 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 2 0.00077673 65.5 By matching By matching By MS/MS 1 2 1 1.1666 1.1335 18.591 4 Median 1.0695 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0945 1.1204 30.887 2 0 Median 1.4264 1.2082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15439000 7274200 8164700 6615300 2898300 3717000 0 0 0 5566800 2975600 2591200 3256900 1400400 1856500 0 0 0 0 0 0 26461 1525 27872 140890;140891;140892;140893 141833;141834 141834 2 NSVTPDMMEEMYK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA IKNSVTPDMMEEMYKKAHAAIRENPVYEKK K N S Y K K 0 0 1 1 0 0 2 0 0 0 0 1 3 0 1 1 1 0 1 1 0 0 13 0 1573.6463 A0A2R8Y6J3;P46777 A0A2R8Y6J3 179 191 RPL5 60S ribosomal protein L5 yes no 2 4.7933E-07 113.69 By MS/MS By MS/MS By matching By matching By matching 4 2 1 1 1 0.98124 0.94104 14.38 9 Median 0.98272 0.94251 14.976 4 0 Median 1.0411 0.88952 10.88 2 0 Median 0.87986 0.84639 NaN 1 0 Median 1.1247 0.94834 NaN 1 0 Median 0.63686 0.6614 NaN 1 0 Median NaN NaN NaN 0 0 Median 143390000 70377000 73009000 113620000 55289000 58331000 17323000 8481700 8841600 9086000 4926600 4159400 2628600 1226300 1402300 728780 453270 275510 0 0 0 26462 375 27873 140894;140895;140896;140897;140898;140899;140900;140901;140902 141835;141836;141837;141838;141839 141836 5 NSVTPDMMEEMYKK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA KNSVTPDMMEEMYKKAHAAIRENPVYEKKP K N S K K A 0 0 1 1 0 0 2 0 0 0 0 2 3 0 1 1 1 0 1 1 0 0 14 1 1701.7412 A0A2R8Y6J3;P46777 A0A2R8Y6J3 179 192 RPL5 60S ribosomal protein L5 yes no 2;3 1.1979E-07 158.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 4 2 2 2 1 0.97398 1.0036 20.094 17 Median 0.94044 0.95421 15.949 6 0 Median 1.0464 1.0121 21.602 4 1 Median 1.0674 1.1631 3.0616 2 0 Median 1.1547 1.0139 12.838 2 0 Median 1.0289 1.0873 16.937 2 1 Median 0.71171 0.60785 NaN 1 0 Median 340690000 165920000 174770000 265090000 131380000 133710000 40273000 17919000 22354000 12691000 5827300 6863500 3083300 1277800 1805500 18937000 9273700 9663600 616510 240800 375710 26463 375 27874 140903;140904;140905;140906;140907;140908;140909;140910;140911;140912;140913;140914;140915;140916;140917;140918;140919 141840;141841;141842;141843;141844;141845;141846;141847;141848;141849;141850;141851;141852;141853;141854;141855;141856;141857;141858 141847 18 NSVVEASEAAYK DYYRYLAEVASGEKKNSVVEASEAAYKEAF EKKNSVVEASEAAYKEAFEISKEQMQPTHP K N S Y K E 3 0 1 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 1 2 0 0 12 0 1266.6092 Q04917;A2IDB2 Q04917 144 155 YWHAH 14-3-3 protein eta yes no 2 7.8154E-06 127.76 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.037 0.96192 10.671 5 Median 1.0073 0.93188 NaN 1 1 Median 1.1527 0.96629 0.64164 2 2 Median 1.037 0.97237 NaN 1 0 Median 0.9148 0.75782 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74632000 35637000 38995000 31994000 15256000 16738000 15796000 7171600 8624000 23575000 11406000 12169000 3267700 1803600 1464000 0 0 0 0 0 0 26464 2714 27875 140920;140921;140922;140923;140924 141859;141860;141861;141862;141863;141864 141860 6 NSVVEASEAAYKEAFEISK DYYRYLAEVASGEKKNSVVEASEAAYKEAF EASEAAYKEAFEISKEQMQPTHPIRLGLAL K N S S K E 4 0 1 0 0 0 4 0 0 1 0 2 0 1 0 3 0 0 1 2 0 0 19 1 2071.011 Q04917;A2IDB2 Q04917 144 162 YWHAH 14-3-3 protein eta yes no 3 0.011268 21.987 By MS/MS By matching By matching 2 1 1 1.0715 1.0356 31.897 4 Median 0.78319 0.77798 38.793 2 0 Median 1.1412 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.212 1.2279 NaN 1 0 Median NaN NaN NaN 0 0 Median 8038000 4003000 4035000 7192000 3593900 3598100 607490 312840 294650 0 0 0 0 0 0 238470 96179 142290 0 0 0 26465 2714 27876 140925;140926;140927;140928 141865;141866 141865 2 NSWGEPWGER AGWGISDGTEYWIVRNSWGEPWGERGWLRI YWIVRNSWGEPWGERGWLRIVTSTYKDGKG R N S E R G 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 1 0 2 0 0 0 0 10 0 1216.5261 Q9UBR2 Q9UBR2 261 270 CTSZ Cathepsin Z yes yes 2 0.021615 36.693 By MS/MS By matching 2 1 1.3678 1.1417 19.592 3 Median NaN NaN NaN 0 0 Median 1.1956 1.0099 17.352 2 0 Median NaN NaN NaN 0 0 Median 1.5664 1.3158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5083600 2184000 2899600 0 0 0 4668700 1991800 2677000 0 0 0 414880 192260 222620 0 0 0 0 0 0 26466 4244 27877 140929;140930;140931 141867 141867 1 NSYVAGQYDDAASYQR ATPEEKLKLEDFFARNSYVAGQYDDAASYQ SYVAGQYDDAASYQRLNSHMNALHLGSQAN R N S Q R L 3 1 1 2 0 2 0 1 0 0 0 0 0 0 0 2 0 0 3 1 0 0 16 0 1806.7809 P11413;E7EUI8;E9PD92;E7EM57 P11413 105 120 G6PD Glucose-6-phosphate 1-dehydrogenase yes no 2 1.9582E-14 176.51 By MS/MS By MS/MS 2 2 1.1277 1.069 21.92 4 Median 1.1277 1.069 9.6144 2 0 Median 1.0787 0.91795 33.421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40396000 17891000 22505000 33558000 14333000 19225000 6837600 3557400 3280200 0 0 0 0 0 0 0 0 0 0 0 0 26467 1964 27878 140932;140933;140934;140935 141868;141869;141870;141871;141872;141873 141868 6 NTAASLQQWK TPKRKPAKKNKSQKKNTAASLQQWKVGDKC KSQKKNTAASLQQWKVGDKCSAIWSEDGCI K N T W K V 2 0 1 0 0 2 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 10 0 1145.5829 A0A1W2PRV5;E7EQZ4;Q16637 A0A1W2PRV5 84 93 SMN1 Survival motor neuron protein yes no 2 0.00087319 90.657 By MS/MS By MS/MS 1 1 1.0566 0.93206 17.154 2 Median 1.1395 1.0523 NaN 1 1 Median 0.97969 0.8256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13861000 6564800 7296700 11407000 5471900 5934600 2455000 1092900 1362100 0 0 0 0 0 0 0 0 0 0 0 0 26468 347 27879 140936;140937 141874;141875 141874 2 NTAAVLEAAQELLR VWPVLRERAGAPGARNTAAVLEAAQELLRN RNTAAVLEAAQELLRNRPISLGHVVVAPPG R N T L R N 4 1 1 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 14 0 1497.8151 Q9BVQ7 Q9BVQ7 127 140 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 0.00050669 68.536 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2939 1.3378 26.836 4 Linear 0.84676 0.84695 NaN 1 0 Median 1.025 0.93661 NaN 1 0 Median 1.226 1.2635 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4283 1.5162 NaN 1 0 Median NaN NaN NaN 0 0 Median 2328000 1016700 1311300 273700 130040 143660 630110 317680 312430 682700 303570 379130 0 0 0 741480 265380 476100 0 0 0 26469 3859 27880 140938;140939;140940;140941 141876;141877;141878;141879 141878 4 NTAELQPESGKR GCDNMTCIIICFKPRNTAELQPESGKRKLE KPRNTAELQPESGKRKLEEVLSTEGAEENG R N T K R K 1 1 1 0 0 1 2 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 12 1 1328.6684 O15355 O15355 509 520 PPM1G Protein phosphatase 1G yes yes 2 0.00085845 70.1 By MS/MS 1 0.97569 0.90261 NaN 1 Median NaN NaN NaN 0 0 Median 0.97569 0.90261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 762000 463400 298600 0 0 0 762000 463400 298600 0 0 0 0 0 0 0 0 0 0 0 0 26470 1538 27881 140942 141880;141881 141881 2 NTAEQFLSR QFFTPKVLQDYRKLKNTAEQFLSRSGYSEV DYRKLKNTAEQFLSRSGYSEVNLSKLFAGC K N T S R S 1 1 1 0 0 1 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1064.5251 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1434 1442 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.0077575 67.897 By MS/MS 1 1.2154 1.0396 NaN 1 Median NaN NaN NaN 0 0 Median 1.2154 1.0396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4596000 2363400 2232500 0 0 0 4596000 2363400 2232500 0 0 0 0 0 0 0 0 0 0 0 0 26471 26 27882 140943 141882 141882 1 NTALETLHQNSITQVSIYEVDK ERFRNMDKRATTEDRNTALETLHQNSITQV HQNSITQVSIYEVDKQDCRKFCTTGIDGAM R N T D K Q 1 0 2 1 0 2 2 0 1 2 2 1 0 0 0 2 3 0 1 2 0 0 22 0 2502.2602 Q92747 Q92747 316 337 ARPC1A Actin-related protein 2/3 complex subunit 1A yes yes 3 8.065E-07 40.012 By matching By MS/MS 1 1 1.1385 1.0879 3.388 2 Median NaN NaN NaN 0 0 Median 1.2797 1.1143 NaN 1 0 Median 1.013 1.0622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6765600 3128900 3636800 0 0 0 283620 119320 164310 6482000 3009600 3472500 0 0 0 0 0 0 0 0 0 26472 3552 27883 140944;140945 141883;141884 141884 2 NTAMDAQEALAR RSLSRTPSPPPFRGRNTAMDAQEALARRLE RGRNTAMDAQEALARRLERAKKLQEQREKE R N T A R R 4 1 1 1 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 12 0 1289.6034 Q7L4I2;H0YGP9;E1B6W4 Q7L4I2 230 241 RSRC2 Arginine/serine-rich coiled-coil protein 2 yes no 2 0.0023826 76.143 By MS/MS 1 0.66924 0.68218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66924 0.68218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6876100 4020000 2856100 0 0 0 0 0 0 6876100 4020000 2856100 0 0 0 0 0 0 0 0 0 26473 3222 27884 140946 141885 141885 1 NTAPDNGPILLQAQTTQR CTVKLWPLPKALLSKNTAPDNGPILLQAQT PDNGPILLQAQTTQRCHDKDINSVAIAPND K N T Q R C 2 1 2 1 0 3 0 1 0 1 2 0 0 0 2 0 3 0 0 0 0 0 18 0 1936.9967 Q12788;J3KNP2;A0A087WYP7 Q12788 459 476 TBL3 Transducin beta-like protein 3 yes no 2 6.7391E-06 59.898 By MS/MS By matching 2 1 0.78958 0.84863 12.518 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78759 0.84615 0.4143 2 0 Median 1.232 1.051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8643800 4632900 4010900 0 0 0 0 0 0 8075100 4388200 3686900 568660 244670 323980 0 0 0 0 0 0 26474 2757 27885 140947;140948;140949 141886 141886 1 NTAWPYFLPMLNR HQRVSIFFDYARCSKNTAWPYFLPMLNRQD SKNTAWPYFLPMLNRQDPFTVHMAARIIAK K N T N R Q 1 1 2 0 0 0 0 0 0 0 2 0 1 1 2 0 1 1 1 0 0 0 13 0 1621.8075 Q9UI12;G3V126;H0YB41 Q9UI12 120 132 ATP6V1H V-type proton ATPase subunit H yes no 2 0.033637 26.514 By MS/MS 1 0.7385 0.73684 NaN 1 Median 0.7385 0.73684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2650400 1554200 1096200 2650400 1554200 1096200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26475 4287 27886 140950 141887;141888 141887 2 NTDEMVELR PAEDMEEEQAFKRSRNTDEMVELRILLQSK AFKRSRNTDEMVELRILLQSKNAGAVIGKG R N T L R I 0 1 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1105.5074 P61978;S4R457;Q5T6W2 P61978 38 46 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 2.9026E-24 204.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 8 8 8 6 1.1285 1.0121 29.369 30 Median 1.2378 1.1641 NaN 1 0 Median 1.2834 1.0927 8.7922 4 0 Median 1.0196 0.99446 38.349 6 2 Median 1.2415 1.0624 11.521 6 2 Median 0.88654 0.90917 19.206 7 3 Median 1.2285 1.0121 47.206 6 1 Median 1240300000 578030000 662240000 40385000 17748000 22637000 70422000 30398000 40024000 686530000 321510000 365030000 142340000 61937000 80404000 236560000 118060000 118490000 64030000 28376000 35654000 26476 2565;3093 27887;27888 140951;140952;140953;140954;140955;140956;140957;140958;140959;140960;140961;140962;140963;140964;140965;140966;140967;140968;140969;140970;140971;140972;140973;140974;140975;140976;140977;140978;140979;140980;140981;140982;140983;140984;140985 141889;141890;141891;141892;141893;141894;141895;141896;141897;141898;141899;141900;141901;141902;141903;141904;141905;141906;141907;141908;141909;141910;141911;141912;141913;141914;141915;141916;141917;141918;141919;141920;141921;141922;141923;141924;141925;141926;141927;141928;141929;141930;141931;141932;141933;141934;141935;141936;141937;141938;141939 141917 1240 51 NTDLDLDKK AGSLFPHHGTFEVIKNTDLDLDKKIPEDYC TFEVIKNTDLDLDKKIPEDYCPLDVQIPSD K N T K K I 0 0 1 3 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 9 1 1060.5401 A0A1W2PRB8;A0A1W2PNF3;A0A1W2PPP8 A0A1W2PRB8 414 422 no no 2 0.066188 31.934 By MS/MS 1 0.9965 1.1314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9965 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2555700 1309200 1246500 0 0 0 0 0 0 2555700 1309200 1246500 0 0 0 0 0 0 0 0 0 26477 346 27889 140986 141940 141940 1 NTDNSEDSRAEDNFNLEK VASVFANADKGDDEKNTDNSEDSRAEDNFN NSEDSRAEDNFNLEKEKEDVPVEMSNGEPG K N T E K E 1 1 4 3 0 0 3 0 0 0 1 1 0 1 0 2 1 0 0 0 0 0 18 1 2096.8883 Q86U86;E7EVG2 Q86U86 1112 1129 PBRM1 Protein polybromo-1 yes no 3 0.0014009 27.714 By matching By MS/MS 1 1 0.90827 0.97728 25.417 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68086 0.81652 NaN 1 0 Median 1.2116 1.1697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7382500 3371400 4011000 0 0 0 0 0 0 5317200 2582900 2734300 2065300 788560 1276700 0 0 0 0 0 0 26478 3273 27890 140987;140988 141941 141941 1 NTDQASMPDNTAAQK SGVLQLGNIVFKKERNTDQASMPDNTAAQK NTDQASMPDNTAAQKVSHLLGINVTDFTRG R N T Q K V 3 0 2 2 0 2 0 0 0 0 0 1 1 0 1 1 2 0 0 0 0 0 15 0 1590.6944 P35579 P35579 359 373 MYH9 Myosin-9 no no 2 0.052444 22.917 By matching By MS/MS 1 1 1.0444 0.95477 8.9424 2 Median 1.0784 1.0171 NaN 1 0 Median 1.0115 0.89626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3592200 1665000 1927200 1175700 491520 684170 2416500 1173500 1243000 0 0 0 0 0 0 0 0 0 0 0 0 26479 2244 27891 140989;140990 141942 141942 1 NTDQASMPENTVAQK SSVLQFGNISFKKERNTDQASMPENTVAQK NTDQASMPENTVAQKLCHLLGMNVMEFTRA R N T Q K L 2 0 2 1 0 2 1 0 0 0 0 1 1 0 1 1 2 0 0 1 0 0 15 0 1632.7413 P35580 P35580 366 380 MYH10 Myosin-10 yes yes 2 7.8403E-05 81.92 By MS/MS By MS/MS 1 1 0.99073 0.90423 5.0954 2 Median 0.92829 0.87223 NaN 1 0 Median 1.0574 0.9374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3990000 2010900 1979000 1484200 828670 655490 2505800 1182300 1323500 0 0 0 0 0 0 0 0 0 0 0 0 26480 2245 27892 140991;140992 141943;141944;141945 141945 3 NTDSDVNLVVPLEVIK RDYLFAVNIKLNQLRNTDSDVNLVVPLEVI TDSDVNLVVPLEVIKGDHEFTDYMIRSNES R N T I K G 0 0 2 2 0 0 1 0 0 1 2 1 0 0 1 1 1 0 0 4 0 0 16 0 1753.9462 Q8N1G2 Q8N1G2 472 487 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 0.0091207 27.862 By matching By MS/MS 1 1 0.84533 0.89093 7.0021 2 Median 0.84202 0.84789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84866 0.93615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5831400 3288900 2542500 1475700 770930 704790 0 0 0 4355700 2518000 1837700 0 0 0 0 0 0 0 0 0 26481 3358 27893 140993;140994 141946;141947 141947 2 NTDVPESQQNFHRPVK VIHSKTKVNVKSVKRNTDVPESQQNFHRPV TDVPESQQNFHRPVKVRKKQIDKEPKIQSC R N T V K V 0 1 2 1 0 2 1 0 1 0 0 1 0 1 2 1 1 0 0 2 0 0 16 1 1894.9286 Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576 531 546 PHF3 PHD finger protein 3 yes no 3;4 4.2796E-05 54.598 By MS/MS By MS/MS 2 5 0.724 0.69686 5.5957 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59326 0.71099 10.653 2 0 Median 0.72736 0.69686 4.3124 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13567000 7826400 5740200 0 0 0 0 0 0 9310700 5489600 3821000 4255900 2336800 1919100 0 0 0 0 0 0 26482 3539 27894 140995;140996;140997;140998;140999;141000;141001 141948;141949;141950;141951;141952;141953;141954;141955 141949 8 NTDVVATLK EELGTLQVTSQILQKNTDVVATLKKIRRYK SQILQKNTDVVATLKKIRRYKANKDVMEKA K N T L K K 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 9 0 959.52876 Q7Z4V5;K7EPS6;K7ERA4 Q7Z4V5 516 524 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 0.0062595 55.112 By MS/MS By MS/MS 1 3 1.0915 0.96279 5.5551 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86209 0.94845 NaN 1 0 Median 1.1367 0.97734 6.7461 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9781400 4593200 5188200 0 0 0 0 0 0 3741600 1946600 1795000 6039900 2646600 3393300 0 0 0 0 0 0 26483 3248 27895 141002;141003;141004;141005 141956;141957;141958;141959;141960;141961 141956 6 NTDVVATLKK EELGTLQVTSQILQKNTDVVATLKKIRRYK QILQKNTDVVATLKKIRRYKANKDVMEKAA K N T K K I 1 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 0 0 2 0 0 10 1 1087.6237 Q7Z4V5;K7EPS6;K7ERA4 Q7Z4V5 516 525 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes no 2 0.003518 68.657 By MS/MS By MS/MS 1 2 1.3826 1.2015 27.331 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63744 0.71338 NaN 1 1 Median 1.1996 1.0757 19.225 2 2 Median 6268900 3357800 2911100 0 0 0 0 0 0 0 0 0 0 0 0 2239600 1347600 891950 4029400 2010200 2019200 26484 3248 27896 141006;141007;141008 141962;141963;141964 141963 3 NTEAVDLITR GIVRYTKEVYVPHPRNTEAVDLITRLPKGA VPHPRNTEAVDLITRLPKGAVLYKTFVHVV R N T T R L 1 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1130.5932 H7C5U8;Q9P0M9;D6RAN8 H7C5U8 98 107 MRPL27 39S ribosomal protein L27, mitochondrial yes no 2 1.9564E-05 147.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2216 1.2134 21.312 6 Median 1.1054 1.075 6.7786 2 1 Median 1.2187 1.0254 38.961 2 1 Median 1.2885 1.3054 NaN 1 1 Median 1.6866 1.328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62002000 26145000 35857000 17116000 8777300 8339100 32031000 11946000 20085000 10618000 4602200 6015600 2237300 819960 1417400 0 0 0 0 0 0 26485 1267 27897 141009;141010;141011;141012;141013;141014 141965;141966;141967;141968;141969;141970;141971;141972;141973 141966 9 NTEAVTLNFR YEDNDEVHIEVHNPRNTEAVTLNFRGEKLA VHNPRNTEAVTLNFRGEKLAKVMGFLADKK R N T F R G 1 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 10 0 1163.5935 Q9UKF6;G5E9W3 Q9UKF6 450 459 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 1.5764E-30 205.36 By MS/MS By MS/MS By matching 1 1 1 1.0036 1.0111 26.886 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0036 1.0111 NaN 1 0 Median 0.98543 0.84918 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63594 0.59647 NaN 1 0 Median 38183000 18802000 19381000 0 0 0 0 0 0 34611000 17040000 17571000 3169200 1457000 1712100 0 0 0 403420 305720 97702 26486 4309 27898 141015;141016;141017 141974;141975;141976;141977 141975 4 NTEDEILK ______________________________ IKGGVWRNTEDEILKAAVMKYGKNQWSRIA R N T L K A 0 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 960.47639 Q99459 Q99459 13 20 CDC5L Cell division cycle 5-like protein yes yes 2 0.066471 31.229 By MS/MS 1 1.0643 1.1684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0643 1.1684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3314800 1659000 1655800 0 0 0 0 0 0 3314800 1659000 1655800 0 0 0 0 0 0 0 0 0 26487 3745 27899 141018 141978 141978 1 NTEDLTEEWLR KLVQTAELTKVFEIRNTEDLTEEWLREKLG FEIRNTEDLTEEWLREKLGFFH________ R N T L R E 0 1 1 1 0 0 3 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 11 0 1404.6521 P60983;G3V4P8 P60983 125 135 GMFB Glia maturation factor beta yes no 2 0.00011486 131.44 By MS/MS By MS/MS By MS/MS 1 1 1 1.0692 0.97858 3.2982 3 Median 1.0692 1.0353 NaN 1 0 Median 1.1778 0.97858 NaN 1 0 Median 0.96438 0.97703 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18334000 8361800 9972600 13225000 5856900 7368300 1543400 667430 875950 3565800 1837500 1728300 0 0 0 0 0 0 0 0 0 26488 2534 27900 141019;141020;141021 141979;141980;141981 141979 3 NTEEEGLKYK VLADQGKSFATASHRNTEEEGLKYKSKVSL TASHRNTEEEGLKYKSKVSLKGNRESDGFR R N T Y K S 0 0 1 0 0 0 3 1 0 0 1 2 0 0 0 0 1 0 1 0 0 0 10 1 1209.5877 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 430 439 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.033426 48.283 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.97066 0.94925 10.868 5 Median 0.89339 0.94925 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79545 0.90503 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0057 1.0888 7.7533 2 0 Median 0.97066 0.87938 NaN 1 0 Median 4824300 2066400 2757900 513660 225450 288200 0 0 0 679400 398350 281050 0 0 0 2949200 1184100 1765100 682090 258480 423600 26489 4175 27901 141022;141023;141024;141025;141026 141982;141983 141982 2 NTEIGFLQDALSKPHGTVK TRFGMKIIDISDVFRNTEIGFLQDALSKPH GFLQDALSKPHGTVKAICIPEGAKYLKRKD R N T V K A 1 0 1 1 0 1 1 2 1 1 2 2 0 1 1 1 2 0 0 1 0 0 19 1 2054.0797 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54;A0A3B3ITK9 Q6PI48 350 368 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3;4 1.7157E-14 109.42 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.99706 1.0381 22.324 8 Median 0.87477 0.82391 6.9543 2 0 Median 1.1827 1.1263 27.434 2 0 Median 0.86181 0.95988 26.991 2 0 Median 1.344 1.241 3.1466 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51203000 27684000 23518000 18974000 10741000 8232200 2267000 1095400 1171700 28021000 15015000 13006000 1941200 832590 1108600 0 0 0 0 0 0 26490 3171 27902 141027;141028;141029;141030;141031;141032;141033;141034 141984;141985;141986;141987;141988 141984 5 NTELAVFHDETEIQNQTDLLSLSGK LLKLKSVVTSIFGVKNTELAVFHDETEIQN TEIQNQTDLLSLSGKTLCVTAGSAPSLINS K N T G K T 1 0 2 2 0 2 3 1 1 1 4 1 0 1 0 2 3 0 0 1 0 0 25 0 2801.3719 P41252;A0A0A0MSX9;J3KR24 P41252 1126 1150 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 3.6847E-17 64.954 By MS/MS By matching 1 1 1 1.0181 0.78569 2 Median 1.0405 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96114 1.0238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7250500 3382400 3868200 6196100 2981700 3214400 0 0 0 1054400 400660 653760 0 0 0 0 0 0 0 0 0 26491 2302 27903 141035;141036 141989;141990 141990 2 NTENNDVEISETK GEKSQPQEKSLIGLKNTENNDVEISETKKA LKNTENNDVEISETKKADVQAPVSPSETSQ K N T T K K 0 0 3 1 0 0 3 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 13 0 1491.6689 Q5UIP0;H7C2B5 Q5UIP0 1751 1763 RIF1 Telomere-associated protein RIF1 yes no 2 0.00010955 84.658 By MS/MS By MS/MS By matching 2 1 1 0.90073 0.97425 11.961 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88266 0.97425 6.002 2 0 Median 0.87308 0.79465 NaN 1 0 Median 0.9738 1.031 NaN 1 0 Median NaN NaN NaN 0 0 Median 10002000 4829400 5172300 0 0 0 0 0 0 7238600 3645300 3593300 946460 484760 461700 1816600 699320 1117300 0 0 0 26492 3109 27904 141037;141038;141039;141040 141991;141992;141993;141994 141993 4 NTEYPLNLPVEDIQK GEKLNDYWNEMKVKKNTEYPLNLPVEDIQK NTEYPLNLPVEDIQKRPDQTWVQCDACLKW K N T Q K R 0 0 2 1 0 1 2 0 0 1 2 1 0 0 2 0 1 0 1 1 0 0 15 0 1771.8992 Q14149 Q14149 390 404 MORC3 MORC family CW-type zinc finger protein 3 yes yes 2 0.034249 24.853 By MS/MS By matching 2 1 0.68731 0.61367 27.744 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72999 0.77159 32.385 2 0 Median 0.68731 0.58826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3213700 1789400 1424300 0 0 0 0 0 0 2897500 1576700 1320800 316210 212760 103460 0 0 0 0 0 0 26493 2858 27905 141041;141042;141043 141995 141995 1 NTFDHPYPTTK QLVGLDEESSEFICRNTFDHPYPTTKLMWI FICRNTFDHPYPTTKLMWIPDTKGVYPDLL R N T T K L 0 0 1 1 0 0 0 0 1 0 0 1 0 1 2 0 3 0 1 0 0 0 11 0 1319.6146 P61962 P61962 63 73 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 3 0.023237 23.514 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1.1028 0.9714 47.179 5 Median 0.64627 0.62573 NaN 1 0 Median 1.5218 1.3559 47.164 2 0 Median 0.61284 0.58737 NaN 1 0 Median 1.2545 1.0532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6055700 2968800 3086900 1399800 693330 706480 1529000 575420 953540 2378700 1393600 985120 748230 306430 441800 0 0 0 0 0 0 26494 2563 27906 141044;141045;141046;141047;141048 141996;141997;141998;141999;142000 141998 5 NTFELITVRPQR SRQIEPANREFCARRNTFELITVRPQREDD ARRNTFELITVRPQREDDRETLVSQCRDTL R N T Q R E 0 2 1 0 0 1 1 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 12 1 1472.81 Q9NQW6;H7C3S1 Q9NQW6 1054 1065 ANLN Actin-binding protein anillin yes no 3 0.052552 27.681 By MS/MS 1 0.6167 0.75003 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6167 0.75003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6029400 4516000 1513400 0 0 0 0 0 0 6029400 4516000 1513400 0 0 0 0 0 0 0 0 0 26495 4069 27907 141049 142001 142001 1 NTFVGTPFWMAPEVIK DFGVAGQLTDTQIKRNTFVGTPFWMAPEVI TFVGTPFWMAPEVIKQSAYDSKADIWSLGI R N T I K Q 1 0 1 0 0 0 1 1 0 1 0 1 1 2 2 0 2 1 0 2 0 0 16 0 1835.928 H0Y630;B4DR80;Q9Y6E0 H0Y630 95 110 STK24 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit no no 2 0.0084313 28.806 By MS/MS By matching 3 1 0.73382 0.72705 16.523 4 Median 0.7715 0.73986 19.189 3 0 Median NaN NaN NaN 0 0 Median 0.68308 0.71445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4097100 2314000 1783100 3592600 2024100 1568400 0 0 0 504490 289870 214630 0 0 0 0 0 0 0 0 0 26496 602 27908 141050;141051;141052;141053 142002 142002 1 NTGESASQLLDAETAER ESRISELTSELTDERNTGESASQLLDAETA GESASQLLDAETAERLRAEKEMKELQTQYD R N T E R L 3 1 1 1 0 1 3 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 17 0 1790.8282 Q92614;A0A0D9SFK2 Q92614 1303 1319 MYO18A Unconventional myosin-XVIIIa yes no 2 0.0033036 33.782 By MS/MS By matching 1 1 1.1948 1.0212 3.8224 2 Median NaN NaN NaN 0 0 Median 1.2626 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1306 0.99394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2613000 1458200 1154800 0 0 0 1304200 863510 440710 0 0 0 1308800 594680 714130 0 0 0 0 0 0 26497 267 27909 141054;141055 142003 142003 1 NTGHKIETDLPQIR MEDDKVAEAAIQIFRNTGHKIETDLPQIRS RNTGHKIETDLPQIRSTLIPILHQKAKRGT R N T I R S 0 1 1 1 0 1 1 1 1 2 1 1 0 0 1 0 2 0 0 0 0 0 14 1 1620.8584 Q29RF7 Q29RF7 704 717 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 9.2214E-05 72.321 By MS/MS 1 0.70256 0.79698 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70256 0.79698 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29420000 17445000 11974000 0 0 0 0 0 0 29420000 17445000 11974000 0 0 0 0 0 0 0 0 0 26498 3003 27910 141056 142004 142004 1 NTGIICTIGPASR HMCRLDIDSPPITARNTGIICTIGPASRSV ARNTGIICTIGPASRSVETLKEMIKSGMNV R N T S R S 1 1 1 0 1 0 0 2 0 3 0 0 0 0 1 1 2 0 0 0 0 0 13 0 1358.6976 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;P14618;B4DNK4 P14618 44 56 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 4.4307E-07 163.9 By MS/MS By MS/MS By matching 3 8 1 0.93581 0.79253 36.455 12 Median 0.9782 0.95652 41.595 3 2 Median 0.93581 0.77259 30.767 8 1 Median 0.81616 0.87497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 198700000 99522000 99180000 64945000 32049000 32896000 130050000 65423000 64630000 3703200 2050000 1653200 0 0 0 0 0 0 0 0 0 26499 2005;1237 27911 141057;141058;141059;141060;141061;141062;141063;141064;141065;141066;141067;141068 142005;142006;142007;142008;142009;142010;142011;142012;142013;142014;142015;142016;142017;142018;142019;142020;142021;142022 142013 18 NTGVILANDANAER CAPGGKTSYMAQLMKNTGVILANDANAERL KNTGVILANDANAERLKSVVGNLHRLGVTN K N T E R L 3 1 3 1 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1456.727 P46087 P46087 408 421 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 3.4949E-32 207.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 4 1.1328 1.061 28.563 11 Median 1.1213 1.0843 NaN 1 1 Median 0.85476 0.72991 58.308 2 0 Median 1.0002 1.061 NaN 1 0 Median 1.291 1.1047 44.144 2 1 Median 1.094 1.1031 6.7454 2 0 Median 1.2136 0.97649 11.479 3 1 Median 133360000 61279000 72077000 3870500 2128100 1742400 11577000 6109200 5467300 13478000 6666900 6811400 6790700 2890100 3900600 71742000 32915000 38827000 25898000 10570000 15328000 26500 2338 27912 141069;141070;141071;141072;141073;141074;141075;141076;141077;141078;141079;141080 142023;142024;142025;142026;142027;142028;142029;142030;142031;142032;142033;142034;142035;142036;142037;142038;142039;142040;142041;142042;142043 142029 21 NTGVSPASRPSPGTPTSPSNLTSGLK AKISSILSSLTSVMKNTGVSPASRPSPGTP PGTPTSPSNLTSGLKTPAPATTTSHNPLAN K N T L K T 1 1 2 0 0 0 0 3 0 0 2 1 0 0 5 6 4 0 0 1 0 0 26 1 2509.2772 Q5VT52 Q5VT52 469 494 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 9.1392E-26 83.362 By MS/MS By matching 1 1 0.31782 0.37648 13.263 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34496 0.41349 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.29282 0.34277 NaN 1 0 Median NaN NaN NaN 0 0 Median 18139000 12795000 5344400 0 0 0 0 0 0 11950000 8772500 3177500 0 0 0 6189200 4022300 2166900 0 0 0 26501 3110 27913 141081;141082 142044;142045 142044 2 NTHATTHNAYDLEVIDIFK DRDSEEAEIIRKYVKNTHATTHNAYDLEVI TTHNAYDLEVIDIFKIEREGECQRYKPFKQ K N T F K I 2 0 2 2 0 0 1 0 2 2 1 1 0 1 0 0 3 0 1 1 0 0 19 0 2201.0753 P09874 P09874 820 838 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 8.5138E-19 116.39 By matching By matching By MS/MS By MS/MS By matching By matching 1 2 11 5 1 3 1.0625 1.0697 19.987 23 Median 1.0625 1.0704 NaN 1 0 Median 1.1052 0.95467 41.103 2 0 Median 1.0043 1.0607 13.719 11 1 Median 1.2183 1.0888 8.5327 5 2 Median 1.1523 1.1916 NaN 1 0 Median 1.7962 1.4933 39.244 3 0 Median 319380000 150710000 168670000 1420900 720420 700510 2223000 1201000 1022000 209000000 101610000 107390000 100750000 44812000 55937000 3513300 1584400 1928900 2475700 780560 1695100 26502 1922 27914 141083;141084;141085;141086;141087;141088;141089;141090;141091;141092;141093;141094;141095;141096;141097;141098;141099;141100;141101;141102;141103;141104;141105 142046;142047;142048;142049;142050;142051;142052;142053;142054;142055;142056;142057;142058;142059;142060 142048 15 NTHATTHNAYDLEVIDIFKIER DRDSEEAEIIRKYVKNTHATTHNAYDLEVI NAYDLEVIDIFKIEREGECQRYKPFKQLHN K N T E R E 2 1 2 2 0 0 2 0 2 3 1 1 0 1 0 0 3 0 1 1 0 0 22 1 2599.3031 P09874 P09874 820 841 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 4 5.4509E-07 44.105 By MS/MS 1 1.1093 1.2574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1093 1.2574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12392000 5712300 6679400 0 0 0 0 0 0 12392000 5712300 6679400 0 0 0 0 0 0 0 0 0 26503 1922 27915 141106 142061;142062 142062 2 NTHTLLLAGVFR GMHPCERSDKVPDNKNTHTLLLAGVFRGGH DNKNTHTLLLAGVFRGGHDILVRSRLLLLD K N T F R G 1 1 1 0 0 0 0 1 1 0 3 0 0 1 0 0 2 0 0 1 0 0 12 0 1340.7565 Q9Y678;H0Y8X7 Q9Y678 824 835 COPG1 Coatomer subunit gamma-1 yes no 3 0.053365 14.258 By MS/MS By matching By matching 2 1 1 1.1963 1.215 8.9692 4 Median 1.1616 1.1645 14.547 2 0 Median 1.4066 1.2447 NaN 1 0 Median 1.1214 1.1861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3787300 1489400 2297800 1960200 646280 1313900 1243700 543990 699720 583340 299160 284180 0 0 0 0 0 0 0 0 0 26504 4481 27916 141107;141108;141109;141110 142063 142063 1 NTIDINNFDGK VKLPHLWDAMVGPLRNTIDINNFDGKSLLD GPLRNTIDINNFDGKSLLDKGDSPAQELVN R N T G K S 0 0 3 2 0 0 0 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1249.5939 A0A0A0MTH9;O14981 A0A0A0MTH9 1059 1069 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.0024101 77.192 By MS/MS 1 1.0273 1.1436 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0273 1.1436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6059300 2845100 3214100 0 0 0 0 0 0 6059300 2845100 3214100 0 0 0 0 0 0 0 0 0 26505 191 27917 141111 142064 142064 1 NTIEETGNLAEQAR NNTLSSQISRLQNIRNTIEETGNLAEQARA RNTIEETGNLAEQARAHVENTERLIEIASR R N T A R A 2 1 2 0 0 1 3 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 14 0 1544.7431 P11047 P11047 1122 1135 LAMC1 Laminin subunit gamma-1 yes yes 2 6.541E-11 122.7 By MS/MS 1 1.5745 1.6463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5745 1.6463 NaN 1 1 Median NaN NaN NaN 0 0 Median 4920500 1262500 3658000 0 0 0 0 0 0 0 0 0 0 0 0 4920500 1262500 3658000 0 0 0 26506 1949 27918 141112 142065 142065 1 NTIEMQAITALAHLR VVDTPGILDHPLEDRNTIEMQAITALAHLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH R N T L R A 3 1 1 0 0 1 1 0 1 2 2 0 1 0 0 0 2 0 0 0 0 0 15 0 1680.8981 Q9BZE4 Q9BZE4 234 248 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 0.056124 11.055 By matching By matching By MS/MS By matching 1 1 1 1 1.0752 1.107 2.4953 4 Median 1.1058 1.1059 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0372 1.0708 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0454 1.1081 NaN 1 0 Median 1.3952 1.1381 NaN 1 0 Median 3544200 1681200 1862900 202840 103300 99539 0 0 0 336820 181320 155500 0 0 0 2577300 1206800 1370500 427190 189810 237380 26507 3898 27919 141113;141114;141115;141116 142066 142066 1 NTIGQVAAGAFADLR DFANMTSLVHLTLSRNTIGQVAAGAFADLR NTIGQVAAGAFADLRALRALHLDSNRLAEV R N T L R A 4 1 1 1 0 1 0 2 0 1 1 0 0 1 0 0 1 0 0 1 0 0 15 0 1502.7841 Q9P244 Q9P244 99 113 LRFN1 Leucine-rich repeat and fibronectin type III domain-containing protein 1 yes yes 2 0.0013359 40.616 By MS/MS By matching By matching 1 1 1 0.98615 0.9947 5.4687 3 Median 0.98615 0.9271 NaN 1 0 Median 1.1937 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86955 0.9947 NaN 1 0 Median NaN NaN NaN 0 0 Median 56587000 26033000 30554000 42480000 19044000 23436000 11949000 5826800 6122500 0 0 0 0 0 0 2157600 1162000 995560 0 0 0 26508 4212 27920 141117;141118;141119 142067;142068 142067 2 NTIMFDDIGR LGVIWGKFSEFYSKKNTIMFDDIGRNFLMN FYSKKNTIMFDDIGRNFLMNPQNGLKIRPF K N T G R N 0 1 1 2 0 0 0 1 0 2 0 0 1 1 0 0 1 0 0 0 0 0 10 0 1180.5547 Q8WVY7 Q8WVY7 247 256 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 2 0.00064301 88.948 By MS/MS By MS/MS 1 1 1.0112 1.0496 17.675 2 Median 0.93217 0.92626 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0969 1.1893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11111000 5712200 5398600 7937900 4380500 3557400 0 0 0 3172900 1331700 1841200 0 0 0 0 0 0 0 0 0 26509 3504 27921 141120;141121 142069;142070 142069 2 NTIQFTHTQIEAIR VIPNRGPYPYNQPKRNTIQFTHTQIEAIRA RNTIQFTHTQIEAIRAGMQPGLTMVVGPPG R N T I R A 1 1 1 0 0 2 1 0 1 3 0 0 0 1 0 0 3 0 0 0 0 0 14 0 1670.874 O60306 O60306 798 811 AQR Intron-binding protein aquarius yes yes 3 0.00057489 58.071 By MS/MS By MS/MS 1 1 1.1117 1.194 26.286 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90135 0.99145 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3711 1.4379 NaN 1 1 Median NaN NaN NaN 0 0 Median 9608000 4545100 5062900 0 0 0 0 0 0 5436300 2834900 2601300 0 0 0 4171700 1710200 2461600 0 0 0 26510 1611 27922 141122;141123 142071;142072 142071 2 NTIQWLENELNR KKKYEKEKEKNKILRNTIQWLENELNRWRN ILRNTIQWLENELNRWRNGETVPIDEQFDK R N T N R W 0 1 3 0 0 1 2 0 0 1 2 0 0 0 0 0 1 1 0 0 0 0 12 0 1528.7634 P33176 P33176 356 367 KIF5B Kinesin-1 heavy chain yes yes 2 4.456E-06 103.7 By MS/MS By MS/MS 1 3 1.17 1.016 13.264 4 Median 1.0161 0.98248 NaN 1 0 Median 1.2291 1.0507 14.867 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12909000 5999600 6909400 4593400 2269800 2323600 8315600 3729800 4585800 0 0 0 0 0 0 0 0 0 0 0 0 26511 2221 27923 141124;141125;141126;141127 142073;142074;142075 142074 3 NTISLLVAGLK SVRTYERTCEKVEERNTISLLVAGLKKEVQ VEERNTISLLVAGLKKEVQALIAEGIALVW R N T L K K 1 0 1 0 0 0 0 1 0 1 3 1 0 0 0 1 1 0 0 1 0 0 11 0 1127.6914 Q14204 Q14204 799 809 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0015464 58.433 By MS/MS By MS/MS By matching By matching 2 2 2 1 1.2459 1.1909 22.087 7 Median 1.2895 1.2637 46.62 2 0 Median NaN NaN NaN 0 0 Median 1.1754 1.2799 8.6875 2 0 Median 1.1647 1.0816 13.62 2 0 Median NaN NaN NaN 0 0 Median 1.2644 1.0598 NaN 1 0 Median 7853800 3686500 4167400 2142100 1021900 1120200 0 0 0 3315800 1556400 1759400 1672600 795920 876680 0 0 0 723400 312310 411090 26512 2865 27924 141128;141129;141130;141131;141132;141133;141134 142076;142077;142078;142079 142079 4 NTISLLVAGLKK SVRTYERTCEKVEERNTISLLVAGLKKEVQ EERNTISLLVAGLKKEVQALIAEGIALVWE R N T K K E 1 0 1 0 0 0 0 1 0 1 3 2 0 0 0 1 1 0 0 1 0 0 12 1 1255.7864 Q14204 Q14204 799 810 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 1.3008E-05 98.048 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 3 1 1.1091 1.1987 16.092 12 Median 1.1111 1.2102 18.841 3 0 Plateau 1.2259 1.1666 2.5211 2 0 Median 1.0685 1.21 5.2474 3 0 Median 1.315 1.336 19.23 3 0 Median 1.3874 1.4498 NaN 1 0 Median NaN NaN NaN 0 0 Median 63541000 29723000 33818000 23428000 10867000 12561000 7268400 3121800 4146600 30169000 14507000 15663000 1523700 670160 853510 1151800 557340 594470 0 0 0 26513 2865 27925 141135;141136;141137;141138;141139;141140;141141;141142;141143;141144;141145;141146 142080;142081;142082;142083;142084;142085;142086;142087;142088 142083 9 NTIVTSYNR CIGQWDRKDIKKGEKNTIVTSYNRNFTGRN IKKGEKNTIVTSYNRNFTGRNDANPETHAF K N T N R N 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 1 1 0 0 9 0 1066.5407 A2A274;Q99798 A2A274 491 499 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.00093589 89.698 By MS/MS By MS/MS 1 2 1.3667 1.2347 45.346 3 Plateau 1.1209 1.0608 NaN 1 0 Median 0.99391 0.86713 61.98 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18149000 7534800 10614000 7867800 3436800 4431000 10281000 4098000 6183000 0 0 0 0 0 0 0 0 0 0 0 0 26514 495 27926 141147;141148;141149 142089;142090;142091;142092;142093 142091 5 NTKDEFEER SPDSDVAATLKKQKKNTKDEFEERAKAIIV LKKQKKNTKDEFEERAKAIIVEFAQQGLNA K N T E R A 0 1 1 1 0 0 3 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 9 1 1166.5204 A0A087WUT6;O60841 A0A087WUT6 782 790 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.025219 57.96 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.1721 1.1642 9.5595 4 Median 1.1586 1.1959 NaN 1 0 Median 1.1702 1.1054 NaN 1 0 Median 1.1975 1.3693 NaN 1 0 Median 1.1739 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4812500 2073900 2738600 320780 134590 186190 2729800 1140300 1589600 970620 453680 516940 791290 345400 445890 0 0 0 0 0 0 26515 35 27927 141150;141151;141152;141153 142094;142095 142094 2 NTKEPPLSLTIHLTSPVVR YEILQSVDDAAIVIKNTKEPPLSLTIHLTS PPLSLTIHLTSPVVREEMEKVLAGETLSVN K N T V R E 0 1 1 0 0 0 1 0 1 1 3 1 0 0 3 2 3 0 0 2 0 0 19 1 2101.1895 Q12906;K7EKJ9;K7EQR9;K7EKY0;K7EPG3 Q12906 159 177 ILF3 Interleukin enhancer-binding factor 3 yes no 3 1.7303E-05 47.397 By matching By MS/MS By matching 1 1 1 0.5359 0.60943 12.656 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5359 0.60943 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47554 0.52753 NaN 1 0 Median 0.77276 0.67889 NaN 1 0 Median 4572000 2688200 1883800 0 0 0 0 0 0 2117400 1327300 790050 0 0 0 1839600 1009300 830350 615030 351600 263430 26516 2769 27928 141154;141155;141156 142096 142096 1 NTKEPPLSLTIHLTSPVVREEMEK YEILQSVDDAAIVIKNTKEPPLSLTIHLTS TIHLTSPVVREEMEKVLAGETLSVNDPPDV K N T E K V 0 1 1 0 0 0 4 0 1 1 3 2 1 0 3 2 3 0 0 2 0 0 24 2 2747.4528 Q12906;K7EKJ9;K7EQR9;K7EKY0;K7EPG3 Q12906 159 182 ILF3 Interleukin enhancer-binding factor 3 yes no 4 0.001748 25.803 By MS/MS By matching 1 1 0.61488 0.70052 14.422 2 Median 0.57435 0.6326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65827 0.77573 NaN 1 0 Median NaN NaN NaN 0 0 Median 8393600 5350500 3043100 5105700 3426500 1679200 0 0 0 0 0 0 0 0 0 3288000 1924000 1363900 0 0 0 26517 2769 27929 141157;141158 142097 142097 1 NTKHEISEMNR EELQQTAGRHGDDLRNTKHEISEMNRMIQR DDLRNTKHEISEMNRMIQRLRAEIDNVKKQ R N T N R M 0 1 2 0 0 0 2 0 1 1 0 1 1 0 0 1 1 0 0 0 0 0 11 1 1357.6408 CON__P13647;P13647;H0YI76 CON__P13647 381 391 KRT5 Keratin, type II cytoskeletal 5 no no 3 0.043956 30.331 By MS/MS 1 0.083386 0.094373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.083386 0.094373 NaN 1 1 Median NaN NaN NaN 0 0 Median 1050200 937020 113160 0 0 0 0 0 0 0 0 0 0 0 0 1050200 937020 113160 0 0 0 + 26518 757 27930 141159 142098 142098 1 NTKLDDLFLKR DVTSAKALYEHLTAKNTKLDDLFLKRYASL LTAKNTKLDDLFLKRYASLLKYAGEPVPFI K N T K R Y 0 1 1 2 0 0 0 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 11 2 1361.7667 P42704 P42704 1348 1358 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.00019847 66.267 By MS/MS By matching 1 1 1.2496 1.4221 4.634 2 Median 1.2928 1.4695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2078 1.3763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18694000 7890500 10803000 14752000 6333200 8419300 0 0 0 3941300 1557300 2384000 0 0 0 0 0 0 0 0 0 26519 2315 27931 141160;141161 142099;142100 142099 2 NTKQEIAEINR EELQVTAGRHGDDLRNTKQEIAEINRMIQR DDLRNTKQEIAEINRMIQRLRSEIDHVKKQ R N T N R M 1 1 2 0 0 1 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 11 1 1314.6892 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 376 386 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 9.7492E-12 142.43 By MS/MS By MS/MS By MS/MS 1 1 3 0.1037 0.11353 37.507 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12832 0.14801 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.083813 0.087083 NaN 1 1 Median NaN NaN NaN 0 0 Median 6522900 6354000 168930 0 0 0 0 0 0 854750 790840 63915 1046400 1046400 0 4621800 4516700 105020 0 0 0 + 26520 741;748;766 27932 141162;141163;141164;141165;141166 142101;142102;142103;142104;142105 142103 5 NTKVEISELNR EELQITAGQHGDSLKNTKVEISELNRVIQR DSLKNTKVEISELNRVIQRLRSEIDSVKKQ K N T N R V 0 1 2 0 0 0 2 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 1 1301.6939 CON__ENSEMBL:ENSBTAP00000038253 CON__ENSEMBL:ENSBTAP00000038253 389 399 yes yes 3 0.00011588 107.06 By MS/MS By MS/MS By MS/MS 1 1 1 0.19346 0.1694 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19346 0.1694 NaN 1 1 Median 2670400 2560400 109960 0 0 0 1746600 1746600 0 0 0 0 0 0 0 0 0 0 923830 813860 109960 + 26521 735 27933 141167;141168;141169 142106;142107;142108 142106 3 NTLENMLVR STDSPVWYTSTSLDRNTLENMLVRVLLVKD STSLDRNTLENMLVRVLLVKDIYDKDNYEL R N T V R V 0 1 2 0 0 0 1 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 9 0 1088.5648 Q9UBW7 Q9UBW7 1349 1357 ZMYM2 Zinc finger MYM-type protein 2 yes yes 2 0.0060753 55.676 By MS/MS 1 0.96555 1.0608 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96555 1.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3352500 1795000 1557400 0 0 0 0 0 0 3352500 1795000 1557400 0 0 0 0 0 0 0 0 0 26522 4252 27934 141170 142109;142110 142110 2 NTLFNLSNFLDK MVYGNERFIQYLASRNTLFNLSNFLDKSGL ASRNTLFNLSNFLDKSGLQGYDMSTFIRRY R N T D K S 0 0 3 1 0 0 0 0 0 0 3 1 0 2 0 1 1 0 0 0 0 0 12 0 1424.73 Q13492;E9PI56;E9PKP6;E9PLJ8;E5RFU0;E5RHK9;E5RFC6;E5RK51;E5RIJ5;E5RGY9;E9PDG8;O60641 Q13492 101 112 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 2 0.001379 53.683 By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 3 1.0461 0.88531 49.432 10 Median 0.66132 0.64852 71.662 2 0 Median 1.0953 0.93242 57.473 3 0 Median 1.3885 1.3947 NaN 1 0 Median 1.8083 1.5859 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8585 0.74409 21.116 3 0 Median 10644000 5342000 5301700 2544600 1243100 1301500 5808600 2971400 2837200 743820 341410 402400 70261 24134 46128 0 0 0 1476300 761870 714410 26523 2820 27935 141171;141172;141173;141174;141175;141176;141177;141178;141179;141180 142111;142112;142113 142112 3 NTLIQFEDFGNHNAFR LIDEFMKAITDRYGRNTLIQFEDFGNHNAF TLIQFEDFGNHNAFRFLRKYREKYCTFNDD R N T F R F 1 1 3 1 0 1 1 1 1 1 1 0 0 3 0 0 1 0 0 0 0 0 16 0 1921.9071 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37 A0A1W2PPH1 249 264 ME2 NAD-dependent malic enzyme, mitochondrial yes no 3 3.6312E-05 54.7 By MS/MS By matching 1 1 1.237 1.1231 10.576 2 Median 1.0931 1.0422 NaN 1 0 Median 1.3998 1.2103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11254000 5299000 5954600 10116000 4766200 5349800 1137500 532770 604780 0 0 0 0 0 0 0 0 0 0 0 0 26524 337 27936 141181;141182 142114;142115 142115 2 NTLLIAGLQAR FPDKPITQYPHAVGKNTLLIAGLQARNNAR AVGKNTLLIAGLQARNNARVIFSGSLDFFS K N T A R N 2 1 1 0 0 1 0 1 0 1 3 0 0 0 0 0 1 0 0 0 0 0 11 0 1168.6928 P39656;A0A0C4DGS1 P39656 240 250 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 0.00014929 116.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 4 2 1 1 1.2896 1.1959 10.724 13 Median 1.1531 1.1492 6.6946 4 0 Median 1.374 1.1959 NaN 1 0 Median 1.2182 1.2334 14.016 4 0 Median 1.35 1.1658 5.7899 2 0 Median 1.3516 1.4489 NaN 1 0 Median 1.5295 1.3156 NaN 1 0 Median 171120000 74279000 96841000 58914000 26033000 32881000 41815000 16884000 24931000 59776000 26937000 32840000 8216700 3544500 4672300 1714500 641240 1073300 683280 239230 444050 26525 253 27937 141183;141184;141185;141186;141187;141188;141189;141190;141191;141192;141193;141194;141195 142116;142117;142118;142119;142120;142121;142122;142123;142124;142125;142126;142127;142128;142129;142130 142122 15 NTLLSQISTK KQKNKEFSQTLENEKNTLLSQISTKDGELK LENEKNTLLSQISTKDGELKMLQEEVTKMN K N T T K D 0 0 1 0 0 1 0 0 0 1 2 1 0 0 0 2 2 0 0 0 0 0 10 0 1103.6186 Q14789 Q14789 1871 1880 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.00092421 70.1 By MS/MS 1 1.1972 1.0464 NaN 1 Median NaN NaN NaN 0 0 Median 1.1972 1.0464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5722800 2545500 3177300 0 0 0 5722800 2545500 3177300 0 0 0 0 0 0 0 0 0 0 0 0 26526 2900 27938 141196 142131 142131 1 NTLMDMR PGTGELDMRKIGQARNTLMDMRLSQVSDSV MRKIGQARNTLMDMRLSQVSDSVSGQTVVD R N T M R L 0 1 1 1 0 0 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 0 7 0 879.39426 O94906 O94906 248 254 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.018478 62.717 By matching By matching By MS/MS By matching 1 1 1 1 0.98773 1.0218 10.753 4 Median 1.0481 1.0521 NaN 1 0 Median 1.4558 1.2454 NaN 1 0 Median 0.92654 0.99184 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93084 0.99232 NaN 1 0 Median NaN NaN NaN 0 0 Median 9281800 4395000 4886800 1265100 639340 625770 2332900 1004500 1328400 4086600 1894300 2192300 0 0 0 1597100 856850 740280 0 0 0 26527 1735 27939 141197;141198;141199;141200 142132;142133 142132 2 NTLPTKETIEQEKR SFDKAKLKKTETQEKNTLPTKETIEQEKRS KNTLPTKETIEQEKRSEIS___________ K N T K R S 0 1 1 0 0 1 3 0 0 1 1 2 0 0 1 0 3 0 0 0 0 0 14 2 1685.8948 P63313 P63313 27 40 TMSB10 Thymosin beta-10 yes yes 3 0.00028511 57.434 By matching By MS/MS By matching 1 1 1 1.0266 1.0013 9.9754 3 Median 0.88364 0.95734 NaN 1 0 Median 1.1048 1.0013 NaN 1 0 Median 1.0266 1.1586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466400 2038500 2427800 1912200 876740 1035500 1593600 809040 784530 960550 352770 607790 0 0 0 0 0 0 0 0 0 26528 2626 27940 141201;141202;141203 142134;142135 142134 2 NTLQLHR HHTIGGSRRAAWRRRNTLQLHRYR______ RRAAWRRRNTLQLHRYR_____________ R N T H R Y 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 880.4879 P61313;E7ERA2 P61313 196 202 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 0.0030738 122.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 1 2 1.2137 1.0714 12.087 13 Median 1.1342 1.0702 7.3346 4 0 Median 1.223 1.0337 15.889 5 0 Median 1.1666 1.1159 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2137 1.219 NaN 1 0 Median 1.4636 1.1611 2.3865 2 0 Median 31395000 14092000 17303000 10640000 4878100 5761700 4794800 2106700 2688000 4128000 1818900 2309000 0 0 0 9649400 4322900 5326500 2183300 965510 1217800 26529 2555 27941 141204;141205;141206;141207;141208;141209;141210;141211;141212;141213;141214;141215;141216 142136;142137;142138;142139;142140;142141;142142;142143;142144;142145 142139 10 NTLTNIAMRPGLEGYALPR RAKATRISIQCRSCRNTLTNIAMRPGLEGY NIAMRPGLEGYALPRKCNTDQAGRPKCPLD R N T P R K 2 2 2 0 0 0 1 2 0 1 3 0 1 0 2 0 2 0 1 0 0 0 19 1 2086.0993 P33992;B1AHB1;B1AHA9;B1AHB2 P33992 177 195 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 9.9819E-14 105.77 By matching By MS/MS By matching 1 2 1 0.73664 0.73251 18.055 4 Median NaN NaN NaN 0 0 Median 0.97707 0.96669 NaN 1 0 Median 0.58436 0.66356 4.8242 2 1 Median 0.88196 0.7815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20490000 11977000 8512900 0 0 0 2824000 1174300 1649600 17343000 10627000 6716600 322410 175840 146570 0 0 0 0 0 0 26530 2224 27942 141217;141218;141219;141220 142146;142147;142148 142148 3 NTLTQTTENLR TRENRSLSEEIKRLKNTLTQTTENLRRVEE KRLKNTLTQTTENLRRVEEDIQQQKATGSE K N T L R R 0 1 2 0 0 1 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 11 0 1289.6575 P15924 P15924 1414 1424 DSP Desmoplakin yes yes 2 2.1186E-07 168.8 By matching By MS/MS By MS/MS 1 2 1 1.2404 1.0213 21.989 4 Median NaN NaN NaN 0 0 Median 1.12 0.91806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2704 1.1129 33.906 2 1 Median NaN NaN NaN 0 0 Median 1.3739 1.136 NaN 1 0 Median 22548000 10151000 12397000 0 0 0 8549700 4828100 3721600 0 0 0 4668600 2199700 2468900 0 0 0 9330100 3123400 6206700 26531 2021 27943 141221;141222;141223;141224 142149;142150;142151;142152;142153 142153 5 NTLTTGVEEIR EPLEISISQDVHDSKNTLTTGVEEIRSVDI HDSKNTLTTGVEEIRSVDIINMLLNFEIKE K N T I R S 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 0 3 0 0 1 0 0 11 0 1231.6408 Q709C8;A0A3B3IT88 Q709C8 1408 1418 VPS13C Vacuolar protein sorting-associated protein 13C yes no 2 0.00034358 110.53 By MS/MS 1 1.5693 1.2775 NaN 1 Median NaN NaN NaN 0 0 Median 1.5693 1.2775 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9666800 3534700 6132100 0 0 0 9666800 3534700 6132100 0 0 0 0 0 0 0 0 0 0 0 0 26532 3205 27944 141225 142154 142154 1 NTMSLLAANNLLAGLR CVILPHIGSATHRTRNTMSLLAANNLLAGL TMSLLAANNLLAGLRGEPMPSELKL_____ R N T L R G 3 1 3 0 0 0 0 1 0 0 5 0 1 0 0 1 1 0 0 0 0 0 16 0 1670.9138 Q9UBQ7 Q9UBQ7 303 318 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes yes 2 1.7426E-139 290.07 By MS/MS 3 1.421 1.1833 7.3112 2 Median NaN NaN NaN 0 0 Median 1.421 1.1833 7.3112 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75314000 31013000 44300000 0 0 0 75314000 31013000 44300000 0 0 0 0 0 0 0 0 0 0 0 0 26533 4243 27945;27946 141226;141227;141228 142155;142156;142157 142156 1906 3 NTNAAEESLPEIQK AELKSLEDKAAEVVKNTNAAEESLPEIQKE KNTNAAEESLPEIQKEHRNLLQELKVIQEN K N T Q K E 2 0 2 0 0 1 3 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1542.7526 Q9NTJ3;E9PD53 Q9NTJ3 975 988 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 9.7798E-06 90.653 By MS/MS 1 0.89631 0.80716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89631 0.80716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6101600 3164500 2937100 0 0 0 0 0 0 0 0 0 6101600 3164500 2937100 0 0 0 0 0 0 26534 4108 27947 141229 142158;142159;142160;142161 142161 4 NTNAAEESLPEIQKEHR AELKSLEDKAAEVVKNTNAAEESLPEIQKE NAAEESLPEIQKEHRNLLQELKVIQENEHA K N T H R N 2 1 2 0 0 1 4 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 17 1 1964.9552 Q9NTJ3;E9PD53 Q9NTJ3 975 991 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 0.00017787 40.085 By MS/MS By matching 3 1 0.84298 0.84878 35.486 4 Median 0.95203 0.95729 34.212 3 2 Median NaN NaN NaN 0 0 Median 0.58102 0.6592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27837000 13555000 14283000 24426000 11378000 13048000 0 0 0 3411500 2176900 1234500 0 0 0 0 0 0 0 0 0 26535 4108 27948 141230;141231;141232;141233 142162;142163;142164;142165 142163 4 NTNAGAPPGTAYQSPLPLSR ENPKSVHKSWDIFFRNTNAGAPPGTAYQSP APPGTAYQSPLPLSRGSLAAVAHAQSLVEA R N T S R G 3 1 2 0 0 1 0 2 0 0 2 0 0 0 4 2 2 0 1 0 0 0 20 0 2011.0123 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;C9J4G7 E9PDF2 82 101 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 2.8501E-08 65.805 By MS/MS By matching 1 1 0.57053 0.52779 26.343 2 Median 0.45309 0.43809 NaN 1 0 Median 0.71843 0.63586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6008400 4028400 1980000 5392300 3646300 1746000 616040 382080 233950 0 0 0 0 0 0 0 0 0 0 0 0 26536 912 27949 141234;141235 142166 142166 1 NTNEEDDEVR KIDEEVRRFRETRQKNTNEEDDEVREAMTR ETRQKNTNEEDDEVREAMTRARALRSQSEE K N T V R E 0 1 2 2 0 0 3 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1219.4953 P49959;F8W7U8 P49959 511 520 MRE11A Double-strand break repair protein MRE11A yes no 2 0.0017405 62.823 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 0.90515 0.9465 9.1082 7 Median NaN NaN NaN 0 0 Median 1.1816 1.0295 NaN 1 0 Median 0.8425 0.8896 10.788 3 0 Median 1.1265 0.96158 2.2352 2 0 Median 0.86037 0.89642 NaN 1 0 Median NaN NaN NaN 0 0 Median 7604700 3777400 3827400 0 0 0 858940 397980 460960 4426800 2330300 2096500 2128600 961320 1167300 190360 87736 102630 0 0 0 26537 2407 27950 141236;141237;141238;141239;141240;141241;141242 142167;142168;142169;142170;142171;142172;142173;142174 142173 8 NTNPNFVR QLYKEQLAKLMATLRNTNPNFVRCIIPNHE KLMATLRNTNPNFVRCIIPNHEKKAGKLDP R N T V R C 0 1 3 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 8 0 960.47773 P35579;P35580 P35579 663 670 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.0028461 130.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 2 0.90003 0.80568 20.939 8 Median 1.3099 1.2814 NaN 1 0 Median 0.89127 0.80326 5.7984 3 0 Median 0.5618 0.62406 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77078 0.8081 NaN 1 1 Median 1.0066 0.83169 15.157 2 0 Median 34933000 16872000 18061000 3333000 825090 2507900 20866000 10193000 10673000 2389500 1498800 890740 0 0 0 4229200 2519400 1709800 4115200 1835900 2279300 26538 2244;2245 27951 141243;141244;141245;141246;141247;141248;141249;141250;141251 142175;142176;142177;142178;142179;142180;142181;142182;142183;142184 142180 10 NTNSVPETAPAAIPETK WHLTDKKRERMQIKRNTNSVPETAPAAIPE NSVPETAPAAIPETKRNAEFLTCNIPTSNA R N T T K R 3 0 2 0 0 0 2 0 0 1 0 1 0 0 3 1 3 0 0 1 0 0 17 0 1738.8737 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 368 384 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 2.9201E-05 54.7 By MS/MS 1 0.61364 0.67715 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61364 0.67715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4991800 3295800 1696000 0 0 0 0 0 0 4991800 3295800 1696000 0 0 0 0 0 0 0 0 0 26539 2498 27952 141252 142185;142186 142186 2 NTNSVPETAPAAIPETKR WHLTDKKRERMQIKRNTNSVPETAPAAIPE SVPETAPAAIPETKRNAEFLTCNIPTSNAS R N T K R N 3 1 2 0 0 0 2 0 0 1 0 1 0 0 3 1 3 0 0 1 0 0 18 1 1894.9749 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 368 385 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 6.9066E-07 68.567 By MS/MS 1 0.47337 0.52062 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47337 0.52062 NaN 1 1 Median NaN NaN NaN 0 0 Median 7857100 5270800 2586300 0 0 0 0 0 0 0 0 0 0 0 0 7857100 5270800 2586300 0 0 0 26540 2498 27953 141253 142187 142187 1 NTNVEDVLNAR GATTMNIGSDKLLFRNTNVEDVLNARKLER LLFRNTNVEDVLNARKLERDSLRDESQRKK R N T A R K 1 1 3 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1243.6157 Q96MW1;Q86WV7 Q96MW1 167 177 CCDC43 Coiled-coil domain-containing protein 43 yes no 2 0.0059131 65.347 By MS/MS 1 3.4426 3.2178 NaN 1 Median 3.4426 3.2178 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35478000 4168300 31310000 35478000 4168300 31310000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26541 3296 27954 141254 142188 142188 1 NTPAFFAER GDLEEGMLAVVKCLKNTPAFFAERLNKAMR VVKCLKNTPAFFAERLNKAMRGAGTKDRTL K N T E R L 2 1 1 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 9 0 1051.5087 P50995;H0Y6E1 P50995 431 439 ANXA11 Annexin A11 yes no 2 0.0017261 78.334 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.98589 0.92914 55.353 5 Median 0.73871 0.69808 NaN 1 0 Median 1.0984 0.92914 NaN 1 0 Median 0.98589 1.019 NaN 1 0 Median 0.6719 0.57841 NaN 1 0 Median 2.4272 2.4349 NaN 1 0 Median NaN NaN NaN 0 0 Median 38404000 19510000 18894000 22004000 12315000 9688200 5920100 2871100 3049000 4618900 2225100 2393800 1800900 1123600 677290 4060500 974700 3085800 0 0 0 26542 2425 27955 141255;141256;141257;141258;141259 142189;142190;142191;142192;142193 142190 5 NTPAFLAER GHFEDLLLAIVNCVRNTPAFLAERLHRALK IVNCVRNTPAFLAERLHRALKGIGTDEFTL R N T E R L 2 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 9 0 1017.5243 P12429;D6RA82 P12429 249 257 ANXA3 Annexin A3;Annexin yes no 2 0.057208 46.462 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26543 1981 27956 141260 142194 142194 1 NTPEKGYLAVAVVK PVLAENYKTEGESCKNTPEKGYLAVAVVKT KNTPEKGYLAVAVVKTSDANINWNNLKDKK K N T V K T 2 0 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 3 0 0 14 1 1487.8348 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 443 456 yes no 3 0.0078595 41.092 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3163500 3163500 0 3163500 3163500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 26544 769 27957 141261 142195 142195 1 NTPSPDVTLGTNPGTEDIQFPIQK NRITPKTQGTNQIQKNTPSPDVTLGTNPGT GTNPGTEDIQFPIQKIPLGLDLKNLRLPRR K N T Q K I 0 0 2 2 0 2 1 2 0 2 1 1 0 1 4 1 4 0 0 1 0 0 24 0 2568.2708 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 288 311 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2;3 0.037087 18.596 By MS/MS By MS/MS 2 1 0.44518 0.48012 5.193 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44389 0.47671 1.0095 2 0 Median NaN NaN NaN 0 0 Median 0.49747 0.52113 NaN 1 0 Median NaN NaN NaN 0 0 Median 8726600 5937000 2789600 0 0 0 0 0 0 7579700 5142200 2437600 0 0 0 1146900 794780 352080 0 0 0 26545 1437 27958 141262;141263;141264 142196;142197;142198 142198 3 NTPVYVSSPTWENHNAVFSAAGFK GADFLARWYNGTNNKNTPVYVSSPTWENHN TWENHNAVFSAAGFKDIRSYRYWDAEKRGL K N T F K D 3 0 3 0 0 0 1 1 1 0 0 1 0 2 2 3 2 1 1 3 0 0 24 0 2622.2503 P17174 P17174 131 154 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 3 4.058E-18 75.797 By MS/MS By MS/MS 2 1 0.66916 0.68386 6.5948 3 Median 0.70179 0.64856 7.4957 2 0 Median NaN NaN NaN 0 0 Median 0.66724 0.69417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57876000 31602000 26274000 49741000 27257000 22484000 0 0 0 8134800 4345100 3789700 0 0 0 0 0 0 0 0 0 26546 2038 27959 141265;141266;141267 142199;142200;142201;142202;142203 142199 5 NTQIIIQEESGIPK EALGLPTVKSARIARNTQIIIQEESGIPKV RNTQIIIQEESGIPKVADPWGGSYMMECLT R N T P K V 0 0 1 0 0 2 2 1 0 4 0 1 0 0 1 1 1 0 0 0 0 0 14 0 1568.841 P22033 P22033 407 420 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 2.7183E-06 96.229 By MS/MS By matching 1 1 0.95423 0.85051 20.652 2 Median 0.81112 0.73495 NaN 1 0 Median 1.1226 0.98424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15953000 8384500 7568700 12237000 6662000 5574600 3716600 1722500 1994100 0 0 0 0 0 0 0 0 0 0 0 0 26547 2095 27960 141268;141269 142204;142205 142205 2 NTRLEIYVVTAEGLRPVK GHFTSAEDLNLLIAKNTRLEIYVVTAEGLR LEIYVVTAEGLRPVKEVGMYGKIAVMELFR K N T V K E 1 2 1 0 0 0 2 1 0 1 2 1 0 0 1 0 2 0 1 3 0 0 18 2 2057.1633 Q16531;F5GY55;F5GZY8;F5GYG8;F5H198 Q16531 36 53 DDB1 DNA damage-binding protein 1 yes no 3 1.6507E-06 63.918 By MS/MS 1 0.70082 0.79006 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70082 0.79006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4411700 2623900 1787800 0 0 0 0 0 0 4411700 2623900 1787800 0 0 0 0 0 0 0 0 0 26548 2985 27961 141270 142206;142207 142206 2 NTSAAIQAYR LGAWTLMGHEYMEMKNTSAAIQAYRHAIEV YMEMKNTSAAIQAYRHAIEVNKRDYRAWYG K N T Y R H 3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1093.5516 Q9UJX2 Q9UJX2 380 389 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.00095511 69.825 By MS/MS 1 1.0218 1.0761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0218 1.0761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1802600 979760 822890 0 0 0 0 0 0 1802600 979760 822890 0 0 0 0 0 0 0 0 0 26549 4300 27962 141271 142208 142208 1 NTSEQDQPMGGWEMIR CIEEIDVDGKFIRLKNTSEQDQPMGGWEMI TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY K N T I R K 0 1 1 1 0 2 2 2 0 1 0 0 2 0 1 1 1 1 0 0 0 0 16 0 1877.8036 P20700 P20700 458 473 LMNB1 Lamin-B1 yes yes 2 2.6842E-08 146.36 By MS/MS By MS/MS By MS/MS By matching 1 1 4 5 1.0888 0.91947 18.863 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79741 0.81503 NaN 1 0 Median 1.2976 1.0835 NaN 1 0 Median 0.71061 0.7145 8.7134 4 0 Median 1.192 0.99382 5.5687 5 0 Median 46920000 26887000 20033000 0 0 0 0 0 0 8184100 5097800 3086300 1944200 853230 1091000 34292000 19804000 14488000 2499500 1132000 1367400 26550 2084 27963 141272;141273;141274;141275;141276;141277;141278;141279;141280;141281;141282 142209;142210;142211;142212;142213;142214;142215;142216;142217;142218;142219;142220 142214 12 NTSFAYPAIR LMVRKPALELLHYLKNTSFAYPAIRYLLYG LHYLKNTSFAYPAIRYLLYGEKGTGKTLSL K N T I R Y 2 1 1 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 10 0 1138.5771 P51398;V9GZ03;V9GYL9 P51398 114 123 DAP3 28S ribosomal protein S29, mitochondrial yes no 2 0.0079253 60.59 By MS/MS 1 0.65049 0.64713 NaN 1 Median 0.65049 0.64713 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9044800 5272000 3772700 9044800 5272000 3772700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26551 2431 27964 141283 142221 142221 1 NTSLPPLWSPEAER GFSSRASDKDITVSKNTSLPPLWSPEAERS KNTSLPPLWSPEAERSHSLSQHTATSSKKP K N T E R S 1 1 1 0 0 0 2 0 0 0 2 0 0 0 3 2 1 1 0 0 0 0 14 0 1595.7944 P49790 P49790 201 214 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.00013919 82.171 By MS/MS 1 0.5097 0.55664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5097 0.55664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10448000 6668800 3779500 0 0 0 0 0 0 10448000 6668800 3779500 0 0 0 0 0 0 0 0 0 26552 2400 27965 141284 142222 142222 1 NTSVVDSEPVR EQTRSGAPWFKKPLKNTSVVDSEPVRFTVK KPLKNTSVVDSEPVRFTVKVTGEPKPEITW K N T V R F 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 2 1 0 0 3 0 0 11 0 1201.5939 H7BXY5;Q0ZGT2 H7BXY5 490 500 NEXN Nexilin yes no 2 0.00018232 77.677 By matching By MS/MS By MS/MS 1 1 1 0.8729 0.74801 27.745 3 Median 0.99112 1.0599 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57814 0.61261 NaN 1 0 Median 0.8729 0.74801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10662000 5916500 4745500 6648400 3303100 3345300 0 0 0 3259600 2219000 1040600 754050 394440 359610 0 0 0 0 0 0 26553 1245 27966 141285;141286;141287 142223;142224;142225 142225 3 NTTGVTEEALK GMRMQHNLEQQIQARNTTGVTEEALKEFSM IQARNTTGVTEEALKEFSMMFKHFDKDKSG R N T L K E 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1161.5877 A0A0D9SF54;Q13813 Q13813 2316 2326 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00017393 79.148 By MS/MS By MS/MS By MS/MS 1 1 2 1.1171 1.0373 13.124 4 Median NaN NaN NaN 0 0 Median 1.2827 1.1399 NaN 1 0 Median 0.80043 0.89131 NaN 1 0 Median 1.1171 1.0437 14.212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23981000 10866000 13115000 0 0 0 13685000 5986300 7698900 5530100 2735000 2795000 4766000 2144400 2621600 0 0 0 0 0 0 26554 264;2838 27967 141288;141289;141290;141291 142226;142227;142228;142229;142230 142227 5 NTTYDLIANIVHDGKPSEGSYR DLREYLSEEVQAVHKNTTYDLIANIVHDGK ANIVHDGKPSEGSYRIHVLHHIWKRRDNDE K N T Y R I 1 1 2 2 0 0 1 2 1 2 1 1 0 0 1 2 2 0 2 1 0 0 22 1 2449.1874 B9A018;Q53GS9;A0A087X1B2 B9A018 494 515 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3;4 8.9819E-13 78.987 By matching By MS/MS By MS/MS By matching 2 4 2 1 0.95104 0.87591 21.747 9 Median NaN NaN NaN 0 0 Median 0.98707 0.90813 5.1087 2 0 Median 0.78527 0.85224 12.778 4 0 Median 1.0429 0.95619 23.743 2 0 Median NaN NaN NaN 0 0 Median 1.7084 1.5777 NaN 1 0 Median 49763000 25373000 24390000 0 0 0 3041300 1291800 1749500 43461000 22512000 20949000 3031900 1485300 1546500 0 0 0 228780 83723 145060 26555 654 27968 141292;141293;141294;141295;141296;141297;141298;141299;141300 142231;142232;142233;142234 142232 4 NTVANSPQTLLAGMNK YLADRVIVFDGVPSKNTVANSPQTLLAGMN TVANSPQTLLAGMNKFLSQLEITFRRDPNN K N T N K F 2 0 3 0 0 1 0 1 0 0 2 1 1 0 1 1 2 0 0 1 0 0 16 0 1657.8458 P61221 P61221 542 557 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 2 2.1098E-10 143.79 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.81012 0.79256 33.023 6 Median 1.1155 1.1178 26.192 3 0 Median 0.77759 0.6627 NaN 1 0 Median 0.84401 0.86528 NaN 1 0 Median 0.56935 0.48957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40427000 19320000 21107000 32174000 15238000 16936000 4336200 2315500 2020700 3056800 1257800 1799100 860130 509130 350990 0 0 0 0 0 0 26556 2550 27969 141301;141302;141303;141304;141305;141306 142235;142236;142237;142238 142235 4 NTVEIFKFEEAENSLLHLK DDTVYLFVVNHPEFKNTVEIFKFEEAENSL IFKFEEAENSLLHLKTVKHELLPSVNDITA K N T L K T 1 0 2 0 0 0 4 0 1 1 3 2 0 2 0 1 1 0 0 1 0 0 19 1 2260.1739 A0A0J9YXF2;Q15165;A0A0J9YXU7;G3XAK4 A0A0J9YXF2 159 177 PON2 Serum paraoxonase/arylesterase 2 yes no 3 3.8271E-14 108.49 By MS/MS 1 0.8456 0.76285 NaN 1 Median NaN NaN NaN 0 0 Median 0.8456 0.76285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7799000 3708400 4090600 0 0 0 7799000 3708400 4090600 0 0 0 0 0 0 0 0 0 0 0 0 26557 293 27970 141307 142239;142240 142240 2 NTVEITELPVR QNQYAVSGEIFVVDRNTVEITELPVRTWTQ VVDRNTVEITELPVRTWTQVYKEQVLEPML R N T V R T 0 1 1 0 0 0 2 0 0 1 1 0 0 0 1 0 2 0 0 2 0 0 11 0 1269.6929 Q02880;E9PCY5 Q02880 940 950 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.00011336 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.70014 0.61606 60.247 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22908 0.24973 NaN 1 0 Median 1.031 0.89366 52.606 2 1 Median 0.44304 0.45493 75.831 2 1 Median 0.60878 0.5013 40.404 2 0 Median 111420000 76156000 35259000 0 0 0 0 0 0 68595000 48261000 20334000 5156300 2737800 2418500 34466000 23393000 11073000 3198200 1765600 1432600 26558 2704 27971 141308;141309;141310;141311;141312;141313;141314 142241;142242;142243;142244;142245;142246;142247;142248;142249 142242 9 NTVELLVEDK GVGDIGVEVEDPQGKNTVELLVEDKGNQVY DPQGKNTVELLVEDKGNQVYRCVYKPMQPG K N T D K G 0 0 1 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 2 0 0 10 0 1158.6132 O75369;E7EN95 O75369 400 409 FLNB Filamin-B yes no 2 0.0006811 101.97 By MS/MS By MS/MS By MS/MS 1 2 1 1.2074 1.115 4.9791 4 Median 1.2002 1.1578 NaN 1 1 Median 1.2074 1.0727 0.13505 2 0 Median NaN NaN NaN 0 0 Median 1.268 1.1788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31583000 14063000 17520000 7366500 2959900 4406500 23585000 10831000 12754000 0 0 0 630960 271880 359080 0 0 0 0 0 0 26559 1664 27972 141315;141316;141317;141318 142250;142251;142252;142253;142254;142255 142251 6 NTVELLVEDKGNQVYR GVGDIGVEVEDPQGKNTVELLVEDKGNQVY TVELLVEDKGNQVYRCVYKPMQPGPHVVKI K N T Y R C 0 1 2 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 1 3 0 0 16 1 1875.969 O75369;E7EN95 O75369 400 415 FLNB Filamin-B yes no 2;3 1.5198E-119 283.43 By MS/MS By MS/MS By MS/MS 5 2 2 1.0954 1.1171 9.8464 8 Median 1.1228 1.1636 4.5317 5 2 Median 1.0251 0.94899 4.35 2 0 Median 0.88519 1.0614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178980000 84227000 94748000 139430000 64444000 74987000 33146000 16333000 16813000 6398200 3450600 2947500 0 0 0 0 0 0 0 0 0 26560 1664 27973 141319;141320;141321;141322;141323;141324;141325;141326;141327 142256;142257;142258;142259;142260;142261;142262;142263;142264;142265;142266;142267;142268;142269 142260 14 NTVLATWQPYTTSK SFDLLKAVCLEFSPKNTVLATWQPYTTSKD KNTVLATWQPYTTSKDGTAGIPNLQLYDVK K N T S K D 1 0 1 0 0 1 0 0 0 0 1 1 0 0 1 1 4 1 1 1 0 0 14 0 1608.8148 Q9BY44;F8WAE5;C9IZE1;H7C5Q3 Q9BY44 87 100 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 1.1179E-05 89.548 By MS/MS 1 0.97661 0.93464 NaN 1 Median 0.97661 0.93464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5076900 2089000 2987900 5076900 2089000 2987900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26561 3886 27974 141328 142270 142270 1 NTVLQQHLETLR AVEKLEVDVIQERSRNTVLQQHLETLRQVL RSRNTVLQQHLETLRQVLTSSFASMPLPGS R N T L R Q 0 1 1 0 0 2 1 0 1 0 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1450.7892 Q9NP66;H0YKL0 Q9NP66 278 289 HMG20A High mobility group protein 20A yes no 3 0.00058154 73.848 By MS/MS 1 2.4493 2.4142 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4493 2.4142 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12241000 2874900 9365900 0 0 0 0 0 0 12241000 2874900 9365900 0 0 0 0 0 0 0 0 0 26562 4040 27975 141329 142271 142271 1 NTVSQSISGDPEIDKK SPDLAPTPAPQSTPRNTVSQSISGDPEIDK TVSQSISGDPEIDKKIKNLKKKLKAIEQLK R N T K K I 0 0 1 2 0 1 1 1 0 2 0 2 0 0 1 3 1 0 0 1 0 0 16 1 1716.853 Q9BY44;F8WAE5 Q9BY44 521 536 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 3 0.00050765 43.408 By MS/MS By MS/MS 1 1 1.4571 1.3589 18.383 2 Median 1.6429 1.5475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2923 1.1933 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8781400 3176600 5604800 7072700 2437900 4634800 0 0 0 0 0 0 1708700 738730 969930 0 0 0 0 0 0 26563 3886 27976 141330;141331 142272;142273 142272 2 NTVVATGGYGR ALCIEDGSIHRIRAKNTVVATGGYGRTYFS IRAKNTVVATGGYGRTYFSCTSAHTSTGDG K N T G R T 1 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 2 0 1 2 0 0 11 0 1093.5516 P31040;D6RFM5;A0A494C1T6 P31040 251 261 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 1.7293E-06 163.32 By MS/MS By MS/MS By MS/MS 1 1 1 1.564 1.3867 22.522 3 Median 1.1071 1.0529 NaN 1 0 Median 1.6054 1.3867 NaN 1 0 Median 1.564 1.6452 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39541000 16427000 23114000 11348000 5248000 6100200 26805000 10695000 16110000 1387200 483360 903860 0 0 0 0 0 0 0 0 0 26564 2200 27977 141332;141333;141334 142274;142275;142276;142277;142278 142277 5 NTVVLFVPQQEAWVVER ASGRAPRRASSGLPRNTVVLFVPQQEAWVV VVLFVPQQEAWVVERMGRFHRILEPGLNIL R N T E R M 1 1 1 0 0 2 2 0 0 0 1 0 0 1 1 0 1 1 0 5 0 0 17 0 2013.0684 Q9UJZ1 Q9UJZ1 35 51 STOML2 Stomatin-like protein 2, mitochondrial yes yes 2 3.9886E-05 50.675 By MS/MS 1 1.1752 1.0118 NaN 1 Median NaN NaN NaN 0 0 Median 1.1752 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2498400 1133500 1365000 0 0 0 2498400 1133500 1365000 0 0 0 0 0 0 0 0 0 0 0 0 26565 4304 27978 141335 142279 142279 1 NTWDCGLQILK VIKTRMQGLEAHKYRNTWDCGLQILKKEGL HKYRNTWDCGLQILKKEGLKAFYKGTVPRL R N T L K K 0 0 1 1 1 1 0 1 0 1 2 1 0 0 0 0 1 1 0 0 0 0 11 0 1346.6653 P53007;B4DP62 P53007 258 268 SLC25A1 Tricarboxylate transport protein, mitochondrial yes no 2 0.0004849 68.735 By MS/MS 1 1.4133 1.1966 NaN 1 Median NaN NaN NaN 0 0 Median 1.4133 1.1966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1335500 486690 848850 0 0 0 1335500 486690 848850 0 0 0 0 0 0 0 0 0 0 0 0 26566 2464 27979 141336 142280 142280 1 NTWELKPEYR ILKEIGVQNVKGIHKNTWELKPEYRHYQGE KGIHKNTWELKPEYRHYQGEEKSD______ K N T Y R H 0 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 1 1 1 0 0 0 10 1 1334.6619 P13984 P13984 231 240 GTF2F2 General transcription factor IIF subunit 2 yes yes 2 0.0019538 76.1 By MS/MS By MS/MS 2 1 1.1171 0.98885 29.42 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0377 1.0831 40.936 2 0 Median 1.1171 0.98885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14589000 7197300 7392100 0 0 0 0 0 0 12639000 6291900 6346700 1950800 905360 1045400 0 0 0 0 0 0 26567 1999 27980 141337;141338;141339 142281;142282;142283;142284 142282 4 NTWLYQALR TADSTICHILNLYRRNTWLYQALREGTRVQ LNLYRRNTWLYQALREGTRVQSVEQIREVA R N T L R E 1 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1163.6087 P56545;A0A087WYL1 P56545 149 157 CTBP2 C-terminal-binding protein 2 yes no 2 0.0034481 65.038 By MS/MS By matching By MS/MS By MS/MS By matching 1 3 4 2 1 1.2778 1.1536 32.829 11 Median 1.1715 1.1452 NaN 1 0 Median 1.5362 1.3035 35.561 3 0 Median 0.87713 0.84344 32.282 4 0 Median 1.4434 1.2379 9.97 2 1 Median 1.877 1.9607 NaN 1 0 Median NaN NaN NaN 0 0 Median 62614000 28777000 33837000 5551000 2681500 2869500 5716200 2089500 3626600 44953000 21303000 23650000 5698300 2473100 3225200 695500 229770 465730 0 0 0 26568 2514 27981 141340;141341;141342;141343;141344;141345;141346;141347;141348;141349;141350 142285;142286;142287;142288;142289;142290 142286 6 NTYYASIAK MSYQRAAWEVDSGRRNTYYASIAKAFAGDI VDSGRRNTYYASIAKAFAGDIANQLATDAV R N T A K A 2 0 1 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 2 0 0 0 9 0 1029.5131 B7Z9I1;Q5T4U5;P11310 B7Z9I1 314 322 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.018899 40.352 By MS/MS 1 1.3191 1.1376 NaN 1 Median NaN NaN NaN 0 0 Median 1.3191 1.1376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1958200 858360 1099900 0 0 0 1958200 858360 1099900 0 0 0 0 0 0 0 0 0 0 0 0 26569 639 27982 141351 142291 142291 1 NVADDTRSEDLRR MSRYLRPPNTSLFVRNVADDTRSEDLRREF VRNVADDTRSEDLRREFGRYGPIVDVYVPL R N V R R E 1 3 1 3 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 2 1545.7495 Q5JRI1;O75494;Q6IQ42 Q5JRI1 16 28 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 3 0.0075584 29.303 By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 0.97851 1.1729 11.81 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95564 0.98509 NaN 1 0 Median 1.1141 0.95583 NaN 1 0 Median 0.97047 1.2253 4.3186 3 0 Median 1.1897 1.196 8.6759 2 0 Median 31688000 15351000 16337000 0 0 0 0 0 0 423350 198160 225190 1025000 474000 551030 29019000 14141000 14878000 1220600 537530 683110 26570 1679 27983 141352;141353;141354;141355;141356;141357;141358 142292;142293;142294;142295;142296;142297 142293 6 NVAIFTAGQESPIILR NFPTSSIAFLGQNERNVAIFTAGQESPIIL VAIFTAGQESPIILRDGNGTIYPMAKDCMG R N V L R D 2 1 1 0 0 1 1 1 0 3 1 0 0 1 1 1 1 0 0 1 0 0 16 0 1727.957 O95071;E7EMW7 O95071 798 813 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 5.5694E-10 137.16 By MS/MS By MS/MS By matching 2 2 1 0.85969 0.7965 3.7685 5 Median 0.84906 0.84547 2.9202 2 0 Median 0.90703 0.79365 0.5073 2 0 Median 0.71257 0.79363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11192000 5913700 5278100 9713400 5091500 4621800 980700 537290 443410 497740 284900 212840 0 0 0 0 0 0 0 0 0 26571 1744 27984 141359;141360;141361;141362;141363 142298;142299;142300;142301;142302 142298 5 NVALLSQLYHSPAR EPITVKFAANPNQNKNVALLSQLYHSPARR KNVALLSQLYHSPARRFGGPVHHQAQRFRF K N V A R R 2 1 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 1 1 0 0 14 0 1567.8471 Q15717 Q15717 192 205 ELAVL1 ELAV-like protein 1 yes yes 2;3 9.5308E-15 147.91 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 6 9 2 0.98596 0.91518 23.798 24 Median 0.94329 0.88189 7.3014 2 1 Median 0.95926 0.80756 2.8552 2 0 Median 0.91133 0.88528 56.294 3 0 Median 1.0821 0.92533 6.1307 6 0 Median 0.8817 0.92633 21.502 9 2 Median 1.246 1.0724 14.228 2 0 Median 614940000 313360000 301580000 23914000 11124000 12790000 4057900 2021400 2036500 58732000 30322000 28411000 8462400 4140100 4322300 519390000 265580000 253810000 384670 169700 214970 26572 2964 27985 141364;141365;141366;141367;141368;141369;141370;141371;141372;141373;141374;141375;141376;141377;141378;141379;141380;141381;141382;141383;141384;141385;141386;141387 142303;142304;142305;142306;142307;142308;142309;142310;142311;142312;142313;142314;142315;142316;142317;142318;142319;142320;142321;142322;142323;142324;142325;142326;142327;142328;142329 142324 26 NVALLSQLYHSPARR EPITVKFAANPNQNKNVALLSQLYHSPARR NVALLSQLYHSPARRFGGPVHHQAQRFRFS K N V R R F 2 2 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 1 1 0 0 15 1 1723.9482 Q15717 Q15717 192 206 ELAVL1 ELAV-like protein 1 yes yes 3 7.7959E-05 52.265 By matching By matching By MS/MS By matching 1 2 2 1 0.98555 1.0843 29.292 6 Median 0.60108 0.59619 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0403 1.1333 0.06827 2 0 Median NaN NaN NaN 0 0 Median 1.1102 1.1945 19.865 2 0 Median 0.93113 0.84419 NaN 1 0 Median 49548000 24746000 24803000 1307900 810000 497950 0 0 0 4801000 2492100 2308800 0 0 0 40692000 20116000 20575000 2747500 1327100 1420400 26573 2964 27986 141388;141389;141390;141391;141392;141393 142330;142331;142332 142331 3 NVAQYNANHPDFPMQIEQLER RCLGSLFSMLHQACRNVAQYNANHPDFPMQ ANHPDFPMQIEQLERYIQRYLVYAILWSLS R N V E R Y 2 1 3 1 0 3 2 0 1 1 1 0 1 1 2 0 0 0 1 1 0 0 21 0 2513.1758 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2468 2488 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.0482E-25 145.43 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 1 2 1 1 1 0.71059 0.70049 9.0932 9 Median 0.71059 0.6708 2.7725 3 0 Median 0.85607 0.7233 NaN 1 0 Median 0.70708 0.75822 10.964 2 0 Median 0.66291 0.58045 NaN 1 0 Median 0.68625 0.72029 NaN 1 0 Median 0.80456 0.6799 NaN 1 0 Median 146590000 84061000 62533000 101760000 59305000 42452000 4456600 2313100 2143500 37473000 21178000 16296000 284750 181930 102820 2438700 983660 1455100 182780 99622 83154 26574 2865 27987 141394;141395;141396;141397;141398;141399;141400;141401;141402 142333;142334;142335;142336;142337;142338;142339;142340;142341;142342;142343 142336 11 NVASGGGGVGDGVQEPTTGNWR EADGKLIQDSRRETKNVASGGGGVGDGVQE GVGDGVQEPTTGNWRGMLKTSKAEELLAEE K N V W R G 1 1 2 1 0 1 1 7 0 0 0 0 0 0 1 1 2 1 0 3 0 0 22 0 2113.9777 O00429 O00429 569 590 DNM1L Dynamin-1-like protein yes yes 2 3.1741E-26 123.38 By MS/MS By matching By matching 1 1 1 1.3362 1.1626 13.687 3 Median 0.98568 0.93875 NaN 1 0 Median 1.3362 1.2113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4019 1.1626 NaN 1 0 Median 7332200 3614300 3717900 6111300 3098500 3012800 880100 382750 497350 0 0 0 0 0 0 0 0 0 340800 133090 207710 26575 1463 27988 141403;141404;141405 142344;142345 142344 2 NVAVDELSR VYAHQEPKSFNGSLKNVAVDELSRQGCTVT FNGSLKNVAVDELSRQGCTVTVSDLYAMNL K N V S R Q 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 9 0 1001.5142 Q5TD05;Q5TD07;P16083;A2A2U4 Q5TD05 24 32 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] yes no 2 0.0011692 84.498 By MS/MS 1 1.3353 1.2617 NaN 1 Median 1.3353 1.2617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6115100 2964900 3150200 6115100 2964900 3150200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26576 2023 27989 141406 142346;142347 142346 2 NVDDILKPPGR QPPPAPRVEKKPESKNVDDILKPPGRESRP PESKNVDDILKPPGRESRPERIVVIMRGLP K N V G R E 0 1 1 2 0 0 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 11 1 1222.667 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1818 1828 YLPM1 YLP motif-containing protein 1 yes no 3 0.0092924 31.843 By MS/MS By MS/MS 1 1 0.57576 0.67052 2.8682 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54812 0.65706 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60479 0.68426 NaN 1 0 Median NaN NaN NaN 0 0 Median 9829100 5396900 4432200 0 0 0 0 0 0 4790900 2553000 2237800 0 0 0 5038200 2843800 2194400 0 0 0 26577 2395 27990 141407;141408 142348;142349;142350 142349 3 NVDEAINFINER QEEIFGPILPIVPVKNVDEAINFINEREKP PVKNVDEAINFINEREKPLALYVFSHNHKL K N V E R E 1 1 3 1 0 0 2 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 12 0 1432.6947 P51648;J3QRD1;I3L2W1;J3KTD9 P51648 344 355 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 0.00011203 90.685 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.1654 1.0099 33.864 5 Median 0.69627 0.69461 NaN 1 0 Median 1.1654 1.0099 NaN 1 0 Median 1.1999 1.1975 NaN 1 0 Median 1.2326 1.191 48.825 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12108000 5800600 6307300 3184100 1848700 1335400 1713600 805380 908270 6450300 2731400 3718900 759890 415140 344750 0 0 0 0 0 0 26578 1349 27991 141409;141410;141411;141412;141413 142351;142352;142353 142353 3 NVDENIR RTLQEQLEKAKESLKNVDENIRKLTGRDPN EKAKESLKNVDENIRKLTGRDPNDVRPIQA K N V I R K 0 1 2 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 7 0 858.41954 Q9H307;G3V5F0;G3V579 Q9H307 21 27 PNN Pinin yes no 2 0.047302 41.502 By MS/MS By matching 1 1 0.99582 0.93979 18.491 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0027 1.0711 NaN 1 0 Median 0.98901 0.82461 NaN 1 0 Median 1532600 806310 726260 0 0 0 0 0 0 0 0 0 0 0 0 1239800 654630 585160 292770 151680 141100 26579 3950 27992 141414;141415 142354;142355 142355 2 NVDGVNYASITR EYLSPADLPKSWDWRNVDGVNYASITRNQH DWRNVDGVNYASITRNQHIPQYCGSCWAHA R N V T R N 1 1 2 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 2 0 0 12 0 1307.647 Q9UBR2 Q9UBR2 70 81 CTSZ Cathepsin Z yes yes 2 3.8652E-06 145.99 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.0714 1.0028 82.413 8 Median 1.0714 1.0028 6.2803 2 0 Median 1.5425 1.2649 1.9314 2 0 Median 0.99051 0.96914 27.846 2 1 Median 0.26155 0.2178 88.426 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 170100000 85464000 84640000 117000000 57871000 59129000 35517000 14173000 21344000 4848300 2402800 2445500 12738000 11017000 1721000 0 0 0 0 0 0 26580 4244 27993 141416;141417;141418;141419;141420;141421;141422;141423;141424 142356;142357;142358;142359;142360;142361;142362;142363;142364 142359 9 NVDILKDPETVK LPNQVWDSIIQQATKNVDILKDPETVKQLG ATKNVDILKDPETVKQLGSILKTNVRACKA K N V V K Q 0 0 1 2 0 0 1 0 0 1 1 2 0 0 1 0 1 0 0 2 0 0 12 1 1369.7453 O14980 O14980 675 686 XPO1 Exportin-1 yes yes 2;3 2.1178E-05 131.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 2 1.1134 1.0458 56.072 12 Median 0.88497 0.92208 10.781 2 0 Median 1.0538 0.97475 6.347 2 0 Median 0.78328 0.89559 90.687 3 1 Median 1.247 1.1879 14.402 2 0 Median 2.5024 2.8033 NaN 1 1 Median 1.3451 1.2135 14.213 2 1 Median 150690000 83393000 67294000 62303000 32871000 29433000 33426000 16499000 16928000 38749000 28106000 10643000 5295800 2514400 2781400 6186300 1391500 4794800 4725800 2011500 2714300 26581 1510 27994 141425;141426;141427;141428;141429;141430;141431;141432;141433;141434;141435;141436;141437 142365;142366;142367;142368;142369;142370;142371;142372;142373;142374;142375;142376;142377;142378;142379;142380;142381;142382;142383 142373 19 NVDKDPAKEDVEK EMEEEVRLKKRKRRRNVDKDPAKEDVEKAK RRNVDKDPAKEDVEKAKKRRGRPPAEKLSP R N V E K A 1 0 1 3 0 0 2 0 0 0 0 3 0 0 1 0 0 0 0 2 0 0 13 2 1485.7311 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;B1ALG2;F6T8Q0;B1ALG1;A0A0U1RR09;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6;A0A0U1RRJ4 P51531 1351 1363 SMARCA2 Probable global transcription activator SNF2L2 yes no 3 0.057927 14.687 By MS/MS 1 0.66572 0.77129 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66572 0.77129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2313200 1249200 1064000 0 0 0 0 0 0 2313200 1249200 1064000 0 0 0 0 0 0 0 0 0 26582 2433 27995 141438 142384 142384 1 NVDKVLEVPPVVYSR LTNKATLWYVPLSLKNVDKVLEVPPVVYSR NVDKVLEVPPVVYSRQEQEEEGRKRYEAQK K N V S R Q 0 1 1 1 0 0 1 0 0 0 1 1 0 0 2 1 0 0 1 5 0 0 15 1 1712.9461 O00154;K7EKP8 O00154 169 183 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 2;3 1.4457E-08 99.5 By MS/MS 6 0.86142 0.89299 14.923 6 Median 0.86142 0.89299 14.923 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60101000 32061000 28040000 60101000 32061000 28040000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26583 1443 27996 141439;141440;141441;141442;141443;141444 142385;142386;142387;142388;142389 142387 5 NVDLLSDMVQEHDEPILK EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP LLSDMVQEHDEPILKHLKDIK_________ K N V L K H 0 0 1 3 0 1 2 0 1 1 3 1 1 0 1 1 0 0 0 2 0 0 18 0 2094.0303 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543 F8W020 184 201 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 1.2595E-25 141.38 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 0.96605 0.82588 14.571 9 Median 1.0249 0.94572 19.161 2 1 Median 0.89667 0.76532 11.98 2 0 Median 0.88299 0.85615 23.325 2 1 Median 0.91939 0.8042 11.758 2 0 Median NaN NaN NaN 0 0 Median 0.98661 0.81887 NaN 1 0 Median 185580000 96795000 88781000 90950000 46502000 44448000 38635000 20510000 18125000 48924000 26089000 22835000 6611500 3515200 3096400 0 0 0 455800 178920 276870 26584 1033 27997 141445;141446;141447;141448;141449;141450;141451;141452;141453 142390;142391;142392 142390 3 NVDLSTFYQNR IQCYTEAISLCPTEKNVDLSTFYQNRAAAF PTEKNVDLSTFYQNRAAAFEQLQKWKEVAQ K N V N R A 0 1 2 1 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 11 0 1355.647 O94826 O94826 149 159 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 0.00011372 138.4 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.3176 1.1754 7.8418 4 Median 1.127 1.0656 NaN 1 0 Median 1.3893 1.2024 NaN 1 0 Median 1.2617 1.2842 NaN 1 0 Median 1.376 1.1491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38903000 18526000 20378000 19578000 9978700 9599100 6002700 2510500 3492100 11918000 5448000 6470200 1404800 588530 816310 0 0 0 0 0 0 26585 1728 27998 141454;141455;141456;141457 142393;142394;142395;142396;142397;142398 142394 6 NVDMLSELVQEYDEPILK PDPKGIPEFWFTIFRNVDMLSELVQEYDEP MLSELVQEYDEPILKHLQDIKVKFSDPGQP R N V L K H 0 0 1 2 0 1 3 0 0 1 3 1 1 0 1 1 0 0 1 2 0 0 18 0 2134.0504 Q99733;C9JZI7;A8MXH2;H0YCI4 Q99733 169 186 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 6.7328E-08 92.925 By matching By MS/MS By MS/MS By matching 1 2 3 1 0.88781 0.85578 6.628 7 Median 0.86761 0.85443 NaN 1 0 Median 0.97359 0.83647 9.6072 2 0 Median 0.86724 0.86122 4.8773 3 0 Median 0.88781 0.77955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11068000 5609200 5458800 307220 151780 155440 3316400 1579600 1736800 7325100 3815000 3510000 119320 62778 56539 0 0 0 0 0 0 26586 3766 27999 141458;141459;141460;141461;141462;141463;141464 142399;142400;142401;142402;142403 142402 5 NVDSILEDYANYK LITRQKQLFYLPAKKNVDSILEDYANYKKS KKNVDSILEDYANYKKSRGNTDNKEYAVNE K N V Y K K 1 0 2 2 0 0 1 0 0 1 1 1 0 0 0 1 0 0 2 1 0 0 13 0 1542.7202 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21;H0YMT8;H0YLV1 B3KTM8 214 226 MORF4L1 Mortality factor 4-like protein 1 yes no 2 8.6406E-07 101.38 By MS/MS By matching 2 1 1.5463 1.2982 19.794 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3668 1.369 27.655 2 0 Median 1.5463 1.2982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10142000 4285700 5856000 0 0 0 0 0 0 9388700 3998700 5390000 753080 287050 466030 0 0 0 0 0 0 26587 585 28000 141465;141466;141467 142404;142405 142405 2 NVDSILEDYANYKK LITRQKQLFYLPAKKNVDSILEDYANYKKS KNVDSILEDYANYKKSRGNTDNKEYAVNEV K N V K K S 1 0 2 2 0 0 1 0 0 1 1 2 0 0 0 1 0 0 2 1 0 0 14 1 1670.8152 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21;H0YMT8 B3KTM8 214 227 MORF4L1 Mortality factor 4-like protein 1 yes no 2;3 0.00052005 72.006 By MS/MS By matching 3 1 1.0545 1.0208 13.397 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98567 1.0319 16.407 3 0 Median 1.1341 1.0099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20935000 10670000 10265000 0 0 0 0 0 0 20259000 10364000 9894800 676070 305910 370160 0 0 0 0 0 0 26588 585 28001 141468;141469;141470;141471 142406;142407;142408;142409;142410 142406 5 NVDSNNKELSIAIR NKLQYFMEQFYGIIRNVDSNNKELSIAIRG RNVDSNNKELSIAIRGYGLFAGPCKVINAK R N V I R G 1 1 3 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 0 1 0 0 14 1 1571.8267 P78527 P78527 351 364 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.8252E-42 224.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 2 3 1 0.99901 1.0875 38.115 12 Median 0.95645 1.0021 NaN 1 0 Median 1.2071 1.1287 NaN 1 0 Median 0.97082 1.1232 26.883 4 0 Median 1.2706 1.1835 40.249 2 0 Median 1.0067 1.147 40.528 3 0 Plateau 2.3477 2.0512 NaN 1 0 Median 248600000 119140000 129460000 24494000 11735000 12760000 4201700 1530200 2671500 197730000 95750000 101980000 3878700 1129300 2749400 17084000 8694400 8389400 1214200 300920 913300 26589 2647 28002 141472;141473;141474;141475;141476;141477;141478;141479;141480;141481;141482;141483;141484 142411;142412;142413;142414;142415;142416;142417;142418;142419;142420;142421;142422;142423;142424 142412 14 NVDTVLMELGVR VRKQVEKIKNSMDGKNVDTVLMELGVRFHR DGKNVDTVLMELGVRFHRLIYEHLQQYSYS K N V V R F 0 1 1 1 0 0 1 1 0 0 2 0 1 0 0 0 1 0 0 3 0 0 12 0 1344.7071 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 533 544 EXOC5 Exocyst complex component 5 yes no 2 3.6978E-06 107.24 By MS/MS By matching By matching 2 1 1 0.98506 0.83014 29.929 4 Median NaN NaN NaN 0 0 Median 0.82761 0.71619 25.986 2 0 Median NaN NaN NaN 0 0 Median 0.97433 0.8007 NaN 1 0 Median 1.2699 1.2343 NaN 1 0 Median NaN NaN NaN 0 0 Median 5455100 2543000 2912100 0 0 0 5157000 2413800 2743300 0 0 0 80992 38111 42881 217110 91147 125960 0 0 0 26590 181 28003 141485;141486;141487;141488 142425;142426;142427 142427 3 NVEAMNFADIER VAVATPRGLVVPVIRNVEAMNFADIERTIT VIRNVEAMNFADIERTITELGEKARKNELA R N V E R T 2 1 2 1 0 0 2 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 12 0 1407.6453 P36957 P36957 334 345 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 3.9932E-06 156.48 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.1243 1.11 18.167 6 Median 1.0794 1.0462 NaN 1 0 Median 1.1444 1.0016 30.167 2 0 Median 1.0662 1.0489 NaN 1 0 Median 1.5691 1.3675 NaN 1 0 Median 1.171 1.1748 NaN 1 0 Median NaN NaN NaN 0 0 Median 30052000 15115000 14937000 7126200 3639500 3486700 2364500 928290 1436200 14283000 7565300 6718100 1182900 457720 725160 5094900 2524000 2570900 0 0 0 26591 2265 28004 141489;141490;141491;141492;141493;141494 142428;142429;142430;142431;142432;142433 142432 6 NVEDFTGPR RSVPVRLHVSRIMLKNVEDFTGPRERSDLG SRIMLKNVEDFTGPRERSDLGFITFDITAD K N V P R E 0 1 1 1 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 9 0 1033.4829 P61009 P61009 50 58 SPCS3 Signal peptidase complex subunit 3 yes yes 2 0.00067887 105.14 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0249 0.93902 13.821 5 Median 0.96816 0.91812 NaN 1 0 Median 1.0428 0.87414 10.125 2 0 Median 1.0249 0.98468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4653 1.1896 NaN 1 0 Median 33720000 16127000 17593000 11647000 5800600 5846400 7322400 3435600 3886800 13247000 6371300 6875700 0 0 0 0 0 0 1503500 519010 984450 26592 2536 28005 141495;141496;141497;141498;141499 142434;142435;142436;142437;142438 142435 5 NVEDLSGGELQR AIVCQQLDLTHLKERNVEDLSGGELQRFAC KERNVEDLSGGELQRFACAVVCIQKADIFM R N V Q R F 0 1 1 1 0 1 2 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1315.6368 P61221;D6R9I9 P61221 213 224 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By matching 1 1 1 1.2335 1.1652 81.251 3 Median 1.2335 1.1652 NaN 1 0 Median 1.0051 0.86874 NaN 1 0 Median 3.9699 4.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49509000 21402000 28106000 22130000 8850800 13280000 18899000 9378400 9521100 8478700 3173000 5305700 0 0 0 0 0 0 0 0 0 26593 2550 28006 141500;141501;141502 142439;142440;142441 142439 3 NVEEIVVK ALIQSDSGDSIEVSRNVEEIVVKIISVFVD DSIEVSRNVEEIVVKIISVFVDALPHVPEH R N V V K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 928.52295 Q9H583;Q5T3Q7 Q9H583 1371 1378 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.014185 79.469 By MS/MS By MS/MS 2 1 1.4332 1.4998 13.149 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4332 1.4998 13.149 2 2 Median NaN NaN NaN 0 0 Median 15399000 6073700 9325700 0 0 0 0 0 0 0 0 0 0 0 0 15399000 6073700 9325700 0 0 0 26594 3086 28007 141503;141504;141505 142442;142443;142444 142444 3 NVEELVIVLK RKKTLQLALDLVSSRNVEELVIVLKKEVIK LVSSRNVEELVIVLKKEVIKTNNVSEHEDT R N V L K K 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 3 0 0 10 0 1154.6911 P53618;E9PP73 P53618 352 361 COPB1 Coatomer subunit beta yes no 2 0.011836 42.109 By MS/MS 1 1.1818 1.0414 NaN 1 Median NaN NaN NaN 0 0 Median 1.1818 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2723900 1353500 1370400 0 0 0 2723900 1353500 1370400 0 0 0 0 0 0 0 0 0 0 0 0 26595 2472 28008 141506 142445 142445 1 NVEELVIVLKK RKKTLQLALDLVSSRNVEELVIVLKKEVIK VSSRNVEELVIVLKKEVIKTNNVSEHEDTD R N V K K E 0 0 1 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 3 0 0 11 1 1282.786 P53618;E9PP73 P53618 352 362 COPB1 Coatomer subunit beta yes no 2;3 0.018179 29.087 By MS/MS By matching 3 1 1.0768 1.2818 14.724 4 Linear 1.1744 1.2389 10.89 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0042 0.91381 NaN 1 0 Median 5872200 2685600 3186600 5577300 2538100 3039200 0 0 0 0 0 0 0 0 0 0 0 0 294950 147490 147460 26596 2472 28009 141507;141508;141509;141510 142446;142447 142447 2 NVEGQDMLYQSLK SSKLQNNNVYTIAKRNVEGQDMLYQSLKLT KRNVEGQDMLYQSLKLTNGIWILAELRIQP R N V L K L 0 0 1 1 0 2 1 1 0 0 2 1 1 0 0 1 0 0 1 1 0 0 13 0 1523.729 Q10567;A0A087X253;P63010 A0A087X253 856 868 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 6.3497E-06 91.936 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 2 2 1 1 1 1.1763 1.1105 15.516 9 Median 1.1763 1.1296 16.253 3 0 Median 1.1968 1.0499 4.2797 2 0 Median 1.3937 1.5303 NaN 1 0 Median 1.3193 1.1105 NaN 1 0 Median 1.0835 1.1147 NaN 1 0 Median 1.1395 0.95161 NaN 1 0 Median 66705000 29654000 37051000 45897000 20641000 25256000 5521300 2499300 3022000 6816600 2398800 4417800 1521200 625160 896010 6400400 3233800 3166600 548840 256290 292540 26597 128;2752 28010;28011 141511;141512;141513;141514;141515;141516;141517;141518;141519;141520 142448;142449;142450;142451;142452 142449 68 5 NVEINLESK VENAVLLETNTVEEKNVEINLESKENTPPV NTVEEKNVEINLESKENTPPVVISADQMVN K N V S K E 0 0 2 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1044.5451 Q5UIP0 Q5UIP0 1377 1385 RIF1 Telomere-associated protein RIF1 yes yes 2 0.025415 37.591 By MS/MS 1 0.40861 0.45523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40861 0.45523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4477600 2816200 1661400 0 0 0 0 0 0 4477600 2816200 1661400 0 0 0 0 0 0 0 0 0 26598 3109 28012 141521 142453 142453 1 NVEIPQLNQLMR RLIALLMAFVCSLPRNVEIPQLNQLMRELL LPRNVEIPQLNQLMRELLELSCCHSCPFSS R N V M R E 0 1 2 0 0 2 1 0 0 1 2 0 1 0 1 0 0 0 0 1 0 0 12 0 1453.7711 Q96T76;H0Y746 Q96T76 728 739 MMS19 MMS19 nucleotide excision repair protein homolog yes no 2 0.00055381 75.378 By MS/MS 1 0.58769 0.57796 NaN 1 Median 0.58769 0.57796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2348500 1574900 773590 2348500 1574900 773590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26599 3742 28013 141522 142454;142455 142455 2 NVELTEVGPR YISFRHHVYKKTDHRNVELTEVGPRFELKL KTDHRNVELTEVGPRFELKLYMIRLGTLEQ R N V P R F 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 10 0 1112.5826 E7ENR5;H0Y714;Q96G21;B9A008 E7ENR5 186 195 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.0023475 82.287 By matching By MS/MS By MS/MS 1 2 1 1.4217 1.4506 42.97 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.047 2.1444 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3292 1.4506 48.259 2 0 Median 1.1695 0.96242 NaN 1 0 Median 26909000 11570000 15339000 0 0 0 0 0 0 4100400 1168100 2932300 0 0 0 19835000 9106900 10729000 2973100 1295200 1677800 26600 865 28014 141523;141524;141525;141526 142456;142457 142457 1 NVELVEGEEGR IVGTGSNACYMEEMRNVELVEGEEGRMCVN EEMRNVELVEGEEGRMCVNMEWGAFGDNGC R N V G R M 0 1 1 0 0 0 4 2 0 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1229.5888 E9PB90;P52789 E9PB90 664 674 HK2 Hexokinase;Hexokinase-2 yes no 2 0.0032932 68.657 By MS/MS By MS/MS 1 1 1.3219 1.2411 22.382 2 Median 1.4658 1.4539 NaN 1 1 Median 1.1921 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3015600 1235900 1779700 1858000 758530 1099400 1157600 477360 680280 0 0 0 0 0 0 0 0 0 0 0 0 26601 908 28015 141527;141528 142458;142459 142459 2 NVEMFMNIEK GWRRFDLQNPSRMDRNVEMFMNIEKTLVQN SRMDRNVEMFMNIEKTLVQNNCLTRPNIYL R N V E K T 0 0 2 0 0 0 2 0 0 1 0 1 2 1 0 0 0 0 0 1 0 0 10 0 1253.5784 Q92922 Q92922 148 157 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.0007841 71.349 By MS/MS By matching By matching 2 3 1 1.1268 0.98729 24.803 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91203 0.98156 3.1803 2 0 Median 1.1603 0.97097 13.905 3 0 Median NaN NaN NaN 0 0 Median 2.0893 1.7701 NaN 1 0 Median 19391000 9644300 9746500 0 0 0 0 0 0 17459000 8763000 8696100 1752300 815270 937010 0 0 0 179520 66050 113470 26602 3567 28016;28017 141529;141530;141531;141532;141533;141534 142460;142461;142462 142462 1775 3 NVEMFMTIEK GWRRYDFQNPSRMDRNVEMFMTIEKSLVQN SRMDRNVEMFMTIEKSLVQNNCLSRPNIFL R N V E K S 0 0 1 0 0 0 2 0 0 1 0 1 2 1 0 0 1 0 0 1 0 0 10 0 1240.5832 Q8TAQ2;F8VXC8 Q8TAQ2 120 129 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.0059428 65.305 By MS/MS By matching By matching 3 2 1 1.1273 1.1113 18.357 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9686 1.0323 14.698 3 1 Median 1.3931 1.2386 9.5901 2 0 Median NaN NaN NaN 0 0 Median 1.5927 1.3313 NaN 1 0 Median 42163000 20871000 21292000 0 0 0 0 0 0 40933000 20382000 20551000 848170 365710 482460 0 0 0 381680 123850 257840 26603 3455 28018;28019 141535;141536;141537;141538;141539;141540 142463;142464;142465;142466 142464 1734;1735 4 NVEPLYGFHAQEFIPFR QKLTTSDIDYALKLKNVEPLYGFHAQEFIP EPLYGFHAQEFIPFRFASGGGRELYFYEEK K N V F R F 1 1 1 0 0 1 2 1 1 1 1 0 0 3 2 0 0 0 1 1 0 0 17 0 2063.0265 J3KR72;P49848;C9JFL8;C9JTY6;E5RKA5;F8WEJ7;C9J7C4;C9JIS2;E5RHA1;C9J088 J3KR72 136 152 TAF6 Transcription initiation factor TFIID subunit 6 yes no 3 0.013471 21.233 By MS/MS 1 0.68906 0.73752 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68906 0.73752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2434500 1393400 1041000 0 0 0 0 0 0 2434500 1393400 1041000 0 0 0 0 0 0 0 0 0 26604 1323 28020 141541 142467;142468 142467 2 NVESFASMLR KSFEEKVENLKGSPKNVESFASMLRHSPLT KGSPKNVESFASMLRHSPLTQMGPAKDKLV K N V L R H 1 1 1 0 0 0 1 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 10 0 1152.5597 H0YC42;Q9Y2Q9;H0YAT2;H7C5V3 H0YC42 190 199 MRPS28 28S ribosomal protein S28, mitochondrial no no 2 0.00070879 107.57 By MS/MS By matching 2 1 1.4661 1.217 18.654 3 Median 1.2657 1.2383 26.342 2 1 Median 1.4661 1.217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31985000 14760000 17225000 29824000 13829000 15996000 2160300 931380 1228900 0 0 0 0 0 0 0 0 0 0 0 0 26605 1172;4387 28021;28022 141542;141543;141544 142469;142470;142471 142470 392 3 NVESGEEELASK WDRREPLSLINVRKRNVESGEEELASKLDH RKRNVESGEEELASKLDHYKAKATRHIFLI R N V S K L 1 0 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1290.5939 Q96HS1 Q96HS1 77 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00029009 83 By MS/MS By MS/MS 1 1 1.2734 1.1525 1.683 2 Median 1.1682 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3881 1.1663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8563300 3441500 5121800 2701000 1097800 1603200 0 0 0 0 0 0 5862300 2343700 3518600 0 0 0 0 0 0 26606 3669 28023 141545;141546 142472;142473;142474;142475 142472 4 NVESYTK YPTKTQTMRVKLASRNVESYTKLGNPTRSE MRVKLASRNVESYTKLGNPTRSEDLLDYGP R N V T K L 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 1 1 0 0 7 0 839.4025 P04843;B7Z4L4 P04843 181 187 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.038095 46.016 By MS/MS 1 1.2956 1.119 NaN 1 Median NaN NaN NaN 0 0 Median 1.2956 1.119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098900 840850 1258000 0 0 0 2098900 840850 1258000 0 0 0 0 0 0 0 0 0 0 0 0 26607 1853 28024 141547 142476;142477;142478 142477 3 NVFDEAILAALEPPEPK VKYVECSALTQKGLKNVFDEAILAALEPPE FDEAILAALEPPEPKKSRRCVLL_______ K N V P K K 3 0 1 1 0 0 3 0 0 1 2 1 0 1 3 0 0 0 0 1 0 0 17 0 1851.9618 P60953 P60953 167 183 CDC42 Cell division control protein 42 homolog yes yes 2 0.0058783 28.764 By MS/MS By MS/MS 2 2 0.65297 0.59523 11.494 4 Median 0.54022 0.5305 9.0474 2 0 Median 0.73188 0.63304 1.4746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2860300 1710900 1149400 1391900 899940 491960 1468400 810970 657390 0 0 0 0 0 0 0 0 0 0 0 0 26608 2532 28025 141548;141549;141550;141551 142479;142480;142481;142482 142481 4 NVFIAQNVASLQELGGSEK DEQSSTDQASAIKTKNVFIAQNVASLQELG AQNVASLQELGGSEKLLRVCLNLPYFLRYI K N V E K L 2 0 2 0 0 2 2 2 0 1 2 1 0 1 0 2 0 0 0 2 0 0 19 0 2003.0324 Q5T4S7 Q5T4S7 237 255 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2;3 3.7687E-18 114.82 By MS/MS By matching 3 1 1.0271 1.0221 19.106 4 Median 1.0396 1.037 16.734 3 0 Plateau 1.3634 1.2126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11566000 5851000 5714800 11141000 5614400 5526200 425170 236560 188610 0 0 0 0 0 0 0 0 0 0 0 0 26609 3089 28026 141552;141553;141554;141555 142483;142484;142485 142484 3 NVFIIGATNRPDIIDPAILR INQILTEMDGMSTKKNVFIIGATNRPDIID GATNRPDIIDPAILRPGRLDQLIYIPLPDE K N V L R P 2 2 2 2 0 0 0 1 0 5 1 0 0 1 2 0 1 0 0 1 0 0 20 1 2207.2426 P55072 P55072 616 635 VCP Transitional endoplasmic reticulum ATPase yes yes 3 4.5149E-05 38.417 By MS/MS 1 0.80067 0.79216 NaN 1 Median NaN NaN NaN 0 0 Median 0.80067 0.79216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2632700 1349100 1283600 0 0 0 2632700 1349100 1283600 0 0 0 0 0 0 0 0 0 0 0 0 26610 2494 28027 141556 142486;142487 142486 2 NVFIIGATNRPDIIDPAILRPGR INQILTEMDGMSTKKNVFIIGATNRPDIID NRPDIIDPAILRPGRLDQLIYIPLPDEKSR K N V G R L 2 3 2 2 0 0 0 2 0 5 1 0 0 1 3 0 1 0 0 1 0 0 23 2 2517.418 P55072 P55072 616 638 VCP Transitional endoplasmic reticulum ATPase yes yes 3;4 1.0351E-11 56.055 By MS/MS By MS/MS 3 3 0.7242 0.7311 17.96 6 Median 0.81741 0.90477 24.231 3 0 Median 0.72951 0.73433 4.7322 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97185000 54435000 42749000 12823000 7072400 5750300 84362000 47363000 36999000 0 0 0 0 0 0 0 0 0 0 0 0 26611 2494 28028 141557;141558;141559;141560;141561;141562 142488;142489;142490;142491;142492;142493;142494;142495;142496;142497;142498 142496 11 NVFLHLHNLDLGFHLSR VFGKVAQNSIRRIAKNVFLHLHNLDLGFHL FLHLHNLDLGFHLSRQTGALSKAIDRGTRG K N V S R Q 0 1 2 1 0 0 0 1 3 0 5 0 0 2 0 1 0 0 0 1 0 0 17 0 2031.0803 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;A0A087WW65 O75027 228 244 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 3 0.029735 14.419 By MS/MS 1 1.6087 1.3026 NaN 1 Median NaN NaN NaN 0 0 Median 1.6087 1.3026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11512000 4490700 7021500 0 0 0 11512000 4490700 7021500 0 0 0 0 0 0 0 0 0 0 0 0 26612 1642 28029 141563 142499 142499 1 NVFNALIR TADGRLPADQRRGYKNVFNALIRITREEGV DQRRGYKNVFNALIRITREEGVLTLWRGCI K N V I R I 1 1 2 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 8 0 945.5396 I3L1P8;Q02978 I3L1P8 152 159 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2 0.0034718 94.163 By MS/MS By MS/MS 2 1 1.1152 1.0418 2.5133 3 Median 1.073 1.034 1.0697 2 0 Median NaN NaN NaN 0 0 Median 1.128 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56407000 26666000 29741000 52495000 24710000 27785000 0 0 0 3911900 1956900 1955000 0 0 0 0 0 0 0 0 0 26613 1277 28030 141564;141565;141566 142500;142501;142502;142503;142504;142505 142502 6 NVFNPEAFKPGNTHK GVLAYARLSHLSDSKNVFNPEAFKPGNTHK NVFNPEAFKPGNTHKCRIIDYSQMDELALL K N V H K C 1 0 3 0 0 0 1 1 1 0 0 2 0 2 2 0 1 0 0 1 0 0 15 1 1698.8478 Q14690;A0A3B3IUD7 Q14690 404 418 PDCD11 Protein RRP5 homolog yes no 3;4 0.00010657 53.491 By MS/MS By matching By matching 3 1 1 0.93164 0.96566 26.234 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98416 1.1385 10.588 3 1 Median 0.93164 0.87163 NaN 1 0 Median 0.57405 0.61325 NaN 1 0 Median NaN NaN NaN 0 0 Median 37088000 18976000 18112000 0 0 0 0 0 0 32460000 16595000 15865000 1386000 642050 743900 3241900 1738500 1503300 0 0 0 26614 448 28031 141567;141568;141569;141570;141571 142506;142507 142506 2 NVFSSSGTSFSGR FNQSPAAFTVGSNGKNVFSSSGTSFSGRKI GKNVFSSSGTSFSGRKIKTAVRRRK_____ K N V G R K 0 1 1 0 0 0 0 2 0 0 0 0 0 2 0 5 1 0 0 1 0 0 13 0 1331.6106 P49790 P49790 1453 1465 NUP153 Nuclear pore complex protein Nup153 yes yes 2 3.5027E-19 138.99 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.7159 0.78643 22.358 5 Median NaN NaN NaN 0 0 Median 0.9869 0.82806 NaN 1 0 Median 0.772 0.84472 10.113 2 0 Median 0.68932 0.60486 NaN 1 0 Median 0.50958 0.53447 NaN 1 0 Median NaN NaN NaN 0 0 Median 23966000 15623000 8342700 0 0 0 1094900 534970 559910 18775000 12434000 6340700 1792300 1080900 711400 2303600 1573000 730640 0 0 0 26615 2400 28032 141572;141573;141574;141575;141576 142508;142509;142510;142511 142508 2 NVGFESDTGGAFK EEVLKNRAIKKAKRRNVGFESDTGGAFKGF RRNVGFESDTGGAFKGFKGLVVPSGGGRFS R N V F K G 1 0 1 1 0 0 1 3 0 0 0 1 0 2 0 1 1 0 0 1 0 0 13 0 1327.6044 Q9UKX7;B0QY21 Q9UKX7 47 59 NUP50 Nuclear pore complex protein Nup50 yes no 2 5.1709E-07 107.24 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0317 0.9949 66.54 4 Median 1.0778 1.0357 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98753 0.95568 NaN 1 0 Median 0.31886 0.2733 NaN 1 1 Median 1.154 1.1007 NaN 1 0 Median NaN NaN NaN 0 0 Median 51228000 29704000 21524000 3648300 1746900 1901400 0 0 0 24515000 11819000 12696000 14200000 11877000 2323100 8864400 4261800 4602600 0 0 0 26616 4317 28033 141577;141578;141579;141580 142512;142513;142514;142515;142516 142514 5 NVGFQVR VAQRVSHELGPSLRRNVGFQVRLESKPPSR ELGPSLRRNVGFQVRLESKPPSRGGALLFC R N V V R L 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 0 818.43989 H7BXY3;Q7L2E3 H7BXY3 486 492 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.062353 37.028 By MS/MS By matching 1 1 0.78282 0.72981 86.824 2 Median NaN NaN NaN 0 0 Median 1.5917 1.3485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38499 0.39499 NaN 1 0 Median 4577000 1918300 2658700 0 0 0 4148500 1598800 2549700 0 0 0 0 0 0 0 0 0 428520 319520 109000 26617 1244 28034 141581;141582 142517 142517 1 NVGLDIEAEVPAVK EVISKLYAVHQEGNKNVGLDIEAEVPAVKD KNVGLDIEAEVPAVKDMLEAGILDTYLGKY K N V V K D 2 0 1 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 3 0 0 14 0 1452.7824 P50990;H7C2U0 P50990 477 490 CCT8 T-complex protein 1 subunit theta yes no 2 0.002348 43.512 By matching By MS/MS By MS/MS By matching 2 3 1 1 0.9263 0.80179 29.352 7 Median 0.7935 0.76343 20.666 2 0 Median 0.94773 0.80179 27.831 3 0 Plateau 0.9611 0.92944 NaN 1 0 Median 1.1802 1.0191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64997000 33220000 31778000 7934200 4418200 3516000 28050000 14154000 13896000 27934000 14147000 13787000 1078400 499880 578520 0 0 0 0 0 0 26618 2423 28035 141583;141584;141585;141586;141587;141588;141589 142518;142519;142520 142519 3 NVGQFSGFPFEK KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K N V E K G 0 0 1 0 0 1 1 2 0 0 0 1 0 3 1 1 0 0 0 1 0 0 12 0 1355.651 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 126 137 DEK Protein DEK yes no 2 6.1571E-05 94.297 By MS/MS By MS/MS By MS/MS By matching 5 8 3 3 0.97573 0.9271 21.993 19 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80334 0.76964 11.753 5 0 Median 1.1251 0.96386 8.0619 8 0 Median 0.93382 0.89114 27.808 3 0 Plateau 1.1605 0.96956 41.198 3 0 Median 244990000 131330000 113650000 0 0 0 0 0 0 187090000 102850000 84241000 40469000 19874000 20595000 14476000 7333400 7142300 2946100 1270600 1675600 26619 1166 28036 141590;141591;141592;141593;141594;141595;141596;141597;141598;141599;141600;141601;141602;141603;141604;141605;141606;141607;141608 142521;142522;142523;142524;142525;142526;142527;142528;142529;142530;142531;142532;142533;142534;142535;142536;142537;142538;142539;142540;142541;142542;142543;142544;142545;142546;142547;142548;142549;142550 142526 30 NVGSAGVTVVIVR VDVSKFGVIFAGAQKNVGSAGVTVVIVRDD QKNVGSAGVTVVIVRDDLLGFALRECPSVL K N V V R D 1 1 1 0 0 0 0 2 0 1 0 0 0 0 0 1 1 0 0 5 0 0 13 0 1269.7405 Q9Y617 Q9Y617 201 213 PSAT1 Phosphoserine aminotransferase yes yes 2 0.00040822 74.162 By MS/MS By MS/MS By matching 1 1 1 1.2147 1.2041 25.825 3 Median 1.2147 1.2041 NaN 1 0 Median 1.1016 0.95253 NaN 1 0 Median 1.4701 1.5954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12324000 5552400 6772000 6091100 2945400 3145700 3359900 1567600 1792300 2873400 1039500 1833900 0 0 0 0 0 0 0 0 0 26620 4476 28037 141609;141610;141611 142551;142552;142553;142554 142551 4 NVGVSFYADKPEVTQEQK HFRTFMLAASWNGTKNVGVSFYADKPEVTQ VSFYADKPEVTQEQKKEFLDVIKCIGIQES K N V Q K K 1 0 1 1 0 2 2 1 0 0 0 2 0 1 1 1 1 0 1 3 0 0 18 1 2038.0007 CON__Q3SZR3 CON__Q3SZR3 140 157 yes yes 3 2.9817E-06 61.815 By MS/MS By MS/MS 1 1 0.26529 0.27098 103.49 2 Median 0.13614 0.13035 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.51694 0.56332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9249900 8471100 778810 7895100 7197700 697420 0 0 0 1354800 1273400 81397 0 0 0 0 0 0 0 0 0 + 26621 779 28038 141612;141613 142555;142556 142555 2 NVGVSFYADKPEVTQEQKK HFRTFMLAASWNGTKNVGVSFYADKPEVTQ SFYADKPEVTQEQKKEFLDVIKCIGIQESE K N V K K E 1 0 1 1 0 2 2 1 0 0 0 3 0 1 1 1 1 0 1 3 0 0 19 2 2166.0957 CON__Q3SZR3 CON__Q3SZR3 140 158 yes yes 3 5.5878E-24 120.9 By MS/MS 2 0.14795 0.14776 78.175 2 Median 0.14795 0.14776 78.175 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51853000 47907000 3945400 51853000 47907000 3945400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 26622 779 28039 141614;141615 142557;142558 142558 2 NVHDLLAK NIWAAQAGKHEAIVKNVHDLLAKLAWDFSP KHEAIVKNVHDLLAKLAWDFSPEQLDHLFD K N V A K L 1 0 1 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 908.50797 Q93008;O00507 Q93008 448 455 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.010768 58.23 By MS/MS 1 0.88867 0.77767 NaN 1 Median NaN NaN NaN 0 0 Median 0.88867 0.77767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6219100 3096800 3122300 0 0 0 6219100 3096800 3122300 0 0 0 0 0 0 0 0 0 0 0 0 26623 3573 28040 141616 142559 142559 1 NVHGINFVSPVR IQQKILHLPTSWDWRNVHGINFVSPVRNQA DWRNVHGINFVSPVRNQASCGSCYSFASMG R N V V R N 0 1 2 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 3 0 0 12 0 1337.7204 H0YCY8;P53634 H0YCY8 196 207 CTSC Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain yes no 2;3 2.4033E-09 170.99 By MS/MS By MS/MS By matching 4 3 1 0.9538 0.91035 34.992 8 Median 0.86876 0.83734 13.203 4 0 Median 2.2432 1.8607 18.671 3 1 Plateau 0.94617 0.90659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104510000 54642000 49872000 88560000 47987000 40573000 11016000 3960300 7055700 4938200 2695200 2243000 0 0 0 0 0 0 0 0 0 26624 1173 28041 141617;141618;141619;141620;141621;141622;141623;141624 142560;142561;142562;142563;142564;142565;142566 142563 6 NVHLAPGWLMQLEK AINTAVKSGRWVMLKNVHLAPGWLMQLEKK KNVHLAPGWLMQLEKKLHSLQPHACFRLFL K N V E K K 1 0 1 0 0 1 1 1 1 0 3 1 1 0 1 0 0 1 0 1 0 0 14 0 1634.8603 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4098 4111 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.0854E-05 89.805 By MS/MS By MS/MS 1 1 0.91129 0.85226 6.3695 2 Median 0.88871 0.89152 NaN 1 0 Median 0.93443 0.81473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23607000 12157000 11450000 19523000 10008000 9515400 4083900 2149000 1934900 0 0 0 0 0 0 0 0 0 0 0 0 26625 2865 28042 141625;141626 142567;142568 142568 2 NVHLFITGEK VVGVERAAQMLQSNKNVHLFITGEK_____ LQSNKNVHLFITGEK_______________ K N V E K - 0 0 1 0 0 0 1 1 1 1 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1156.6241 Q68CQ4 Q68CQ4 747 756 DIEXF Digestive organ expansion factor homolog yes yes 2 0.0016291 63.816 By matching By MS/MS 1 1 0.84158 0.82623 20.328 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64415 0.71561 NaN 1 0 Median 1.0995 0.95396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4373000 2494900 1878100 0 0 0 0 0 0 2440600 1664900 775620 1932400 829990 1102400 0 0 0 0 0 0 26626 3123 28043 141627;141628 142569;142570 142569 2 NVHSEDFENR PFSSKFFSAYKSHFRNVHSEDFENRILLNC KSHFRNVHSEDFENRILLNCPYCTFNADKK R N V N R I 0 1 2 1 0 0 2 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 10 0 1245.5374 Q9H2P0;A0A2R8Y469 Q9H2P0 95 104 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.04687 17.221 By matching By matching By MS/MS By matching 1 1 2 1 0.9707 0.93085 11.944 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80167 0.85237 NaN 1 0 Median 1.1462 0.93085 NaN 1 0 Median 0.9977 1.0463 8.4748 2 0 Median 0.9707 0.82383 NaN 1 0 Median 2128000 1157100 970920 0 0 0 0 0 0 282110 154110 128000 129790 62476 67310 1617200 892470 724770 98870 48022 50848 26627 3946 28044 141629;141630;141631;141632;141633 142571;142572 142571 2 NVHTTDFPGNYSGYDDAWDQDRFEK EEMRSRVVLGEFGVRNVHTTDFPGNYSGYD YSGYDDAWDQDRFEKNFRVDVVHMDENSLE R N V E K N 1 1 2 5 0 1 1 2 1 0 0 1 0 2 1 1 2 1 2 1 0 0 25 1 2976.2587 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8Y8D6;H0Y723 O15160 23 47 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 4 2.9172E-08 42.106 By MS/MS 1 0.84326 0.95929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84326 0.95929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8303100 4661800 3641300 0 0 0 0 0 0 8303100 4661800 3641300 0 0 0 0 0 0 0 0 0 26628 1528 28045 141634 142573;142574 142573 2 NVIAALNSR EFSPGSKKLVVATEKNVIAALNSRTGEILW VVATEKNVIAALNSRTGEILWRHVDKGTAE K N V S R T 2 1 2 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 956.54033 Q8N766;Q5TG59 Q8N766 61 69 EMC1 ER membrane protein complex subunit 1 yes no 2 0.0545 43.808 By MS/MS 1 1.5911 1.3395 NaN 1 Median NaN NaN NaN 0 0 Median 1.5911 1.3395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5908100 2477000 3431000 0 0 0 5908100 2477000 3431000 0 0 0 0 0 0 0 0 0 0 0 0 26629 3392 28046 141635 142575 142575 1 NVIAPLMTR LTEPNSLRLLIQQNKNVIAPLMTRHGRLWS LIQQNKNVIAPLMTRHGRLWSNFWGALSAD K N V T R H 1 1 1 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 1 0 0 9 0 1013.5692 Q02809 Q02809 402 410 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.0040235 61.962 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1342 0.99946 53.455 5 Median 1.0501 0.99946 NaN 1 0 Median 1.1342 0.98443 NaN 1 0 Median 1.3013 1.3699 NaN 1 0 Median 1.2261 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41374 0.34329 NaN 1 0 Median 15709000 7232100 8477000 6263100 3270200 2992800 2382500 1058600 1323900 4191400 1663300 2528100 1757300 830330 926930 0 0 0 1114900 409740 705140 26630 2702 28047 141636;141637;141638;141639;141640 142576;142577 142576 2 NVIDKLAQFVAR ______________________________ ELRNVIDKLAQFVARNGPEFEKMTMEKQKD R N V A R N 2 1 1 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 2 0 0 12 1 1372.7827 J3QK89;Q8IWX8 J3QK89 14 25 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 2 0.0054047 56.563 By MS/MS By MS/MS By matching 2 2 2 1.0659 1.0707 23.105 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2789 1.459 6.4135 2 2 Median NaN NaN NaN 0 0 Median 0.9595 1.0292 21.49 2 0 Median 1.0428 0.93939 2.5904 2 0 Median 7937700 3630100 4307600 0 0 0 0 0 0 3415800 1416700 1999000 0 0 0 2336600 1149200 1187300 2185400 1064200 1121200 26631 1338 28048 141641;141642;141643;141644;141645;141646 142578;142579;142580 142580 3 NVIEAVYNR NIPSLPPGGELASKRNVIEAVYNRLNPYKN ELASKRNVIEAVYNRLNPYKNDDTDSTSTD R N V N R L 1 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 9 0 1076.5615 P35813 P35813 356 364 PPM1A Protein phosphatase 1A yes yes 2 0.0096066 65.252 By MS/MS 1 0.94381 0.94164 NaN 1 Median 0.94381 0.94164 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14179000 7934300 6244900 14179000 7934300 6244900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26632 2251 28049 141647 142581 142581 1 NVIFEISPTEEVGDFEVK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF FEISPTEEVGDFEVKAKFMGVQMETFMLHY K N V V K A 0 0 1 1 0 0 4 1 0 2 0 1 0 2 1 1 1 0 0 3 0 0 18 0 2051.0099 P46940;H0YLE8 P46940 1587 1604 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00089797 37.426 By MS/MS By MS/MS 1 1 0.90464 0.82661 0.63323 2 Median 0.87231 0.82291 NaN 1 0 Median 0.93817 0.83032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4262700 1958000 2304700 2011100 1025100 985950 2251600 932880 1318800 0 0 0 0 0 0 0 0 0 0 0 0 26633 2350 28050 141648;141649 142582;142583;142584 142583 3 NVIFQPVAELK FTTDDSICVLGISKRNVIFQPVAELKKQTD ISKRNVIFQPVAELKKQTDFEHRIPKEQWW R N V L K K 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1256.7129 Q01813;B1APP6;H0Y757 Q01813 726 736 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0022363 54.608 By MS/MS By matching 2 1 1.0091 0.92181 23.624 3 Median 1.1519 1.0984 24.79 2 0 Median 0.95573 0.83491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22005000 10451000 11554000 14475000 6722200 7752600 7530500 3728800 3801700 0 0 0 0 0 0 0 0 0 0 0 0 26634 2692 28051 141650;141651;141652 142585;142586 142586 2 NVIFQPVAELKK FTTDDSICVLGISKRNVIFQPVAELKKQTD SKRNVIFQPVAELKKQTDFEHRIPKEQWWL R N V K K Q 1 0 1 0 0 1 1 0 0 1 1 2 0 1 1 0 0 0 0 2 0 0 12 1 1384.8078 Q01813;B1APP6;H0Y757 Q01813 726 737 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 0.00083052 74.162 By MS/MS By MS/MS By matching 5 1 1 0.95483 1.0058 15.065 7 Median 1.0141 1.041 15.999 5 0 Median 0.95483 0.92381 NaN 1 0 Median 0.85124 0.96792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40099000 19271000 20828000 34615000 16061000 18554000 3127800 1690900 1436900 2355800 1519000 836810 0 0 0 0 0 0 0 0 0 26635 2692 28052 141653;141654;141655;141656;141657;141658;141659 142587;142588;142589;142590;142591 142588 5 NVIGLQMGTNR ENPRNFSDNQLQEGKNVIGLQMGTNRGASQ QEGKNVIGLQMGTNRGASQAGMTGYGMPRQ K N V N R G 0 1 2 0 0 1 0 2 0 1 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1201.6237 P37802;X6RJP6 P37802 172 182 TAGLN2 Transgelin-2 yes no 2 0.00011146 147.2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 2 1 1.1731 1.0104 13.537 14 Median 1.1208 1.0638 12.25 4 0 Median 1.2245 1.0139 12.61 5 0 Median 1.2891 1.2374 2.8725 2 0 Median 1.0911 0.9076 9.696 2 0 Median NaN NaN NaN 0 0 Median 1.1689 0.94874 NaN 1 0 Median 921800000 425190000 496610000 626540000 290640000 335900000 134570000 60068000 74500000 135290000 62550000 72744000 23510000 11024000 12486000 0 0 0 1880800 907710 973110 26636 2269 28053;28054 141660;141661;141662;141663;141664;141665;141666;141667;141668;141669;141670;141671;141672;141673 142592;142593;142594;142595;142596;142597;142598;142599;142600;142601;142602;142603;142604;142605;142606;142607;142608;142609;142610;142611;142612;142613;142614;142615;142616;142617 142599 1017 26 NVIHASDSVEGAQR APGTIRGDFSVHISRNVIHASDSVEGAQRE RNVIHASDSVEGAQREIQLWFQSSELVSWA R N V Q R E 2 1 1 1 0 1 1 1 1 1 0 0 0 0 0 2 0 0 0 2 0 0 14 0 1481.7223 Q4TT34;F2Z2X0;O00746;A0A087WVT9 Q4TT34 156 169 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 4.5867E-05 79.466 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.4727 1.1835 31.704 9 Median 0.71262 0.70577 6.2899 2 0 Median 1.5899 1.319 10.175 2 0 Median 0.71102 0.7211 3.5944 2 0 Median 1.4813 1.3607 9.0458 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33590000 16907000 16683000 10068000 5699900 4368000 8224900 3441200 4783700 11830000 6478000 5351600 3467800 1287800 2180000 0 0 0 0 0 0 26637 992 28055 141674;141675;141676;141677;141678;141679;141680;141681;141682 142618;142619;142620;142621;142622;142623;142624;142625;142626;142627;142628;142629;142630;142631;142632 142622 15 NVIHPFLSR AVHPKDTRYQHLKGKNVIHPFLSRSLPIVF QHLKGKNVIHPFLSRSLPIVFDEFVDMDFG K N V S R S 0 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 9 0 1081.6033 P26640;A0A140T936 P26640 563 571 VARS Valine--tRNA ligase yes no 2 0.0021711 87.476 By MS/MS 1 0.97534 0.82716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97534 0.82716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7700300 3720600 3979700 0 0 0 0 0 0 0 0 0 7700300 3720600 3979700 0 0 0 0 0 0 26638 2148 28056 141683 142633 142633 1 NVIISSAAERPLEIR TISSALNLMQICKGKNVIISSAAERPLEIR NVIISSAAERPLEIRGPYDVANLGLLFGLS K N V I R G 2 2 1 0 0 0 2 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 15 1 1666.9366 P78346;Q5VU11 P78346 184 198 RPP30 Ribonuclease P protein subunit p30 yes no 2;3 3.1905E-09 117.52 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.98926 0.95127 14.232 8 Median 0.87043 0.93043 27.245 2 0 Median 1.0551 0.89604 18.255 2 0 Median 0.83365 0.86437 3.7529 2 0 Median 1.146 1.0262 0.596 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56285000 29715000 26570000 24409000 12995000 11414000 2038000 1042000 995950 28415000 14959000 13457000 1422600 719490 703120 0 0 0 0 0 0 26639 2641 28057 141684;141685;141686;141687;141688;141689;141690;141691 142634;142635;142636;142637;142638 142634 5 NVIIWGNHSSTQYPDVNHAK AQIALKLGVTANDVKNVIIWGNHSSTQYPD GNHSSTQYPDVNHAKVKLQGKEVGVYEALK K N V A K V 1 0 3 1 0 1 0 1 2 2 0 1 0 0 1 2 1 1 1 2 0 0 20 0 2279.1083 P40925;B9A041;B8ZZ51;C9JF79 P40925 180 199 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase yes no 2;3;4 1.2585E-223 330.25 By MS/MS By MS/MS By MS/MS By MS/MS 8 5 2 2 1.0217 0.89264 22.019 17 Median 0.91712 0.82637 28.295 8 0 Median 1.0591 0.90565 15.112 5 0 Median 0.90067 0.86805 3.9496 2 0 Median 1.142 0.96699 5.4896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1084700000 539400000 545260000 861010000 431650000 429360000 158850000 75342000 83509000 60550000 30449000 30101000 4254700 1964400 2290300 0 0 0 0 0 0 26640 2291 28058 141692;141693;141694;141695;141696;141697;141698;141699;141700;141701;141702;141703;141704;141705;141706;141707;141708 142639;142640;142641;142642;142643;142644;142645;142646;142647;142648;142649;142650;142651;142652;142653;142654;142655;142656;142657;142658;142659;142660 142649 22 NVINTFTQTAHSGR GLVRFGVAPDHPEVKNVINTFTQTAHSGRC KNVINTFTQTAHSGRCAFWGNVEVGRDVTV K N V G R C 1 1 2 0 0 1 0 1 1 1 0 0 0 1 0 1 3 0 0 1 0 0 14 0 1544.7696 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0C4DGN7;A0A0A0MT64;J3QQX3;J3QKZ8 P22570 91 104 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2;3 2.6065E-16 183.99 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.4745 1.3526 37.499 6 Median 1.0582 1.0361 NaN 1 0 Median 2.3864 2.0812 NaN 1 0 Median 0.94307 0.91911 4.8291 2 0 Median 2.0637 1.7724 0.53231 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172660000 70727000 101930000 5355400 2195800 3159600 952560 307550 645010 73050000 37909000 35141000 93304000 30315000 62989000 0 0 0 0 0 0 26641 2102 28059 141709;141710;141711;141712;141713;141714 142661;142662;142663;142664;142665;142666;142667;142668 142668 8 NVIQEPRPCGGPHTAVGTK LGGLALNEGVNWLIKNVIQEPRPCGGPHTA EPRPCGGPHTAVGTKYGMPSSHSQFMWFFS K N V T K Y 1 1 1 0 1 1 1 3 1 1 0 1 0 0 3 0 2 0 0 2 0 0 19 1 2017.0163 Q86YN1 Q86YN1 78 96 DOLPP1 Dolichyldiphosphatase 1 yes yes 3;4 1.9852E-05 46.494 By MS/MS 2 1.1268 1.057 36.697 2 Median NaN NaN NaN 0 0 Median 1.1268 1.057 36.697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8770400 4377400 4392900 0 0 0 8770400 4377400 4392900 0 0 0 0 0 0 0 0 0 0 0 0 26642 3308 28060 141715;141716 142669;142670 142669 2 NVIQSVLQAIR VTLREPLRQAIKKKKNVIQSVLQAIRKTVC KKKKNVIQSVLQAIRKTVCDWETGHEPFND K N V I R K 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1239.7299 Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JQH3;A0A087WVZ5 Q7L576 505 515 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 2 0.004516 47.823 By matching By MS/MS By matching 1 1 1 1.0878 0.93768 4.4811 3 Plateau NaN NaN NaN 0 0 Median 0.9705 0.86497 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0878 0.93768 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1937 0.93148 NaN 1 0 Median 824060 383380 440680 0 0 0 93284 52395 40889 0 0 0 488140 231850 256280 0 0 0 242640 99132 143510 26643 3224 28061 141717;141718;141719 142671 142671 1 NVISSSSFK GLCALATFDRQELQRNVISSSSFKLFLELE RQELQRNVISSSSFKLFLELEPQVRDIIFK R N V F K L 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 4 0 0 0 1 0 0 9 0 967.49746 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070 C9JFE4 289 297 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.038984 46.457 By MS/MS 1 1.2078 1.0268 NaN 1 Median NaN NaN NaN 0 0 Median 1.2078 1.0268 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6044200 2724300 3319900 0 0 0 6044200 2724300 3319900 0 0 0 0 0 0 0 0 0 0 0 0 26644 695 28062 141720 142672 142672 1 NVIVLQTVLQEVR VLLHQIDVLEDPAIRNVIVLQTVLQEVRNR IRNVIVLQTVLQEVRNRSAPVYKRIRDVTN R N V V R N 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 0 1 0 0 4 0 0 13 0 1509.8879 Q9Y2L1;F2Z2C0 Q9Y2L1 87 99 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.00042159 84.658 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 1 1 1.0215 0.97195 22.402 9 Median 0.99519 0.99753 3.6739 2 2 Median 1.186 1.009 28.586 3 2 Plateau 1.0313 1.077 18.753 2 0 Median 1.2291 1.0761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80984 0.71392 NaN 1 0 Median 14216000 7052800 7163400 2669400 1352700 1316700 8305400 4138000 4167500 2771900 1354600 1417300 267540 101820 165720 0 0 0 201910 105610 96297 26645 4384 28063 141721;141722;141723;141724;141725;141726;141727;141728;141729 142673;142674;142675;142676;142677;142678;142679;142680 142677 8 NVIVNGLVLASDGQK LLVLATALFGQPPFKNVIVNGLVLASDGQK NVIVNGLVLASDGQKMSKRKKNYPDPVSII K N V Q K M 1 0 2 1 0 1 0 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 15 0 1525.8464 P41252;A0A0A0MSX9;J3KR24 P41252 586 600 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 5.196E-10 108.37 By MS/MS By MS/MS 1 1 1.0406 1.0578 14.079 2 Median 0.9894 0.9576 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0945 1.1686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12479000 6028800 6450200 11148000 5350500 5797900 0 0 0 1330600 678270 652280 0 0 0 0 0 0 0 0 0 26646 2302 28064 141730;141731 142681;142682;142683 142681 2 NVKDPVEIQTLVNK TYAVRRIRDAFRENKNVKDPVEIQTLVNKA KNVKDPVEIQTLVNKAKRDLGVIRRQVHIG K N V N K A 0 0 2 1 0 1 1 0 0 1 1 2 0 0 1 0 1 0 0 3 0 0 14 1 1595.8883 Q9HD34;C9JY28;C9JRX8;F5H189;H7C4Q5 Q9HD34 45 58 LYRM4 LYR motif-containing protein 4 yes no 3 1.1497E-05 93.348 By MS/MS 1 0.81107 0.82263 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81107 0.82263 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8109400 4525000 3584400 0 0 0 0 0 0 8109400 4525000 3584400 0 0 0 0 0 0 0 0 0 26647 4036 28065 141732 142684 142684 1 NVKPDQWVK LKILMDKPEMNVVLKNVKPDQWVKLNLGTV MNVVLKNVKPDQWVKLNLGTVGFYRTQYSS K N V V K L 0 0 1 1 0 1 0 0 0 0 0 2 0 0 1 0 0 1 0 2 0 0 9 1 1112.5978 E9PLK3;P55786;H0YCQ5 E9PLK3 568 576 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.023898 58.815 By MS/MS 2 1.0803 1.0275 0.5797 2 Median NaN NaN NaN 0 0 Median 1.0803 1.0275 0.5797 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5929500 2961200 2968400 0 0 0 5929500 2961200 2968400 0 0 0 0 0 0 0 0 0 0 0 0 26648 960 28066 141733;141734 142685 142685 1 NVKVEVAATER DCIFPYAFKEVIEKKNVKVEVAATERTLLG IEKKNVKVEVAATERTLLGFFLAKVHKIDP K N V E R T 2 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 3 0 0 11 1 1214.6619 A0A087WU64;A6NMQ1;P09884 A0A087WU64 605 615 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2;3 0.00038944 60.255 By MS/MS 2 0.96482 0.97978 8.3452 2 Median 0.96482 0.97978 8.3452 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6439700 3149400 3290200 6439700 3149400 3290200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26649 26 28067 141735;141736 142686;142687;142688 142687 3 NVKYELQQLEGSSDR ELKSEILSKKQNELKNVKYELQQLEGSSDR NVKYELQQLEGSSDRILELDQELIKAEREL K N V D R I 0 1 1 1 0 2 2 1 0 0 2 1 0 0 0 2 0 0 1 1 0 0 15 1 1764.8642 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 459 473 RAD50 DNA repair protein RAD50 yes no 2;3 2.3664E-07 151.1 By matching By MS/MS By matching 1 2 1 0.99297 1.1263 17.03 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9266 1.051 9.7918 2 0 Median NaN NaN NaN 0 0 Median 1.2173 1.376 NaN 1 0 Median NaN NaN NaN 0 0 Median 57114000 30432000 26682000 4527300 3442900 1084400 0 0 0 48850000 25506000 23344000 0 0 0 3737300 1483800 2253500 0 0 0 26650 3561 28068 141737;141738;141739;141740 142689;142690;142691;142692 142691 4 NVLDGELLNR RMLHVDRRTLQNAVRNVLDGELLNRYLYLS QNAVRNVLDGELLNRYLYLSTMERSELAKK R N V N R Y 0 1 2 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 Q10570;A0A087X101 Q10570 1397 1406 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 0.00032996 124.98 By MS/MS By MS/MS By MS/MS 3 3 2 1.0971 1.0827 36.937 8 Median NaN NaN NaN 0 0 Median 1.1696 0.9674 58.08 3 0 Median 0.96608 1.0551 5.5058 3 0 Median 1.2889 1.1265 1.4677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103100000 50649000 52447000 0 0 0 9488800 4914400 4574500 91338000 44819000 46519000 2269400 915490 1353900 0 0 0 0 0 0 26651 2753 28069 141741;141742;141743;141744;141745;141746;141747;141748 142693;142694;142695;142696;142697;142698;142699;142700;142701;142702;142703 142694 11 NVLDSEDEIEELSK VPRLLFEDWTYDDFRNVLDSEDEIEELSKT RNVLDSEDEIEELSKTVVQVAKNQHFDGFV R N V S K T 0 0 1 2 0 0 4 0 0 1 2 1 0 0 0 2 0 0 0 1 0 0 14 0 1618.7574 Q9BWS9 Q9BWS9 162 175 CHID1 Chitinase domain-containing protein 1 yes yes 2 6.1762E-08 102.4 By matching By matching By MS/MS By matching 1 1 2 2 1.0415 1.0044 25.835 6 Median 0.9788 0.94341 NaN 1 0 Median 1.2302 1.061 NaN 1 0 Median 1.0922 1.1718 13.672 2 0 Median 0.84323 0.75365 32.881 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53743000 25320000 28422000 1550000 593050 956960 1978600 874040 1104500 49955000 23733000 26222000 258730 119630 139100 0 0 0 0 0 0 26652 3874 28070 141749;141750;141751;141752;141753;141754 142704;142705 142704 2 NVLELSNVVR GAEELTKEDEMPVGRNVLELSNVVRSANYT MPVGRNVLELSNVVRSANYTCVAISSLGMI R N V V R S 0 1 2 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 3 0 0 10 0 1141.6455 P10586 P10586 283 292 PTPRF Receptor-type tyrosine-protein phosphatase F yes yes 2 0.0030923 57.96 By MS/MS By matching By matching 1 1 1 1.175 0.99308 10.941 3 Median 1.2153 1.1892 NaN 1 0 Median 1.175 0.99308 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1254 0.97603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7400100 3038200 4361900 2686300 1095800 1590600 4404600 1797700 2606900 0 0 0 309140 144760 164380 0 0 0 0 0 0 26653 1939 28071 141755;141756;141757 142706 142706 1 NVLFSHLDDNER KDYKTMAALAKAIEKNVLFSHLDDNERSDI IEKNVLFSHLDDNERSDIFDAMFSVSFIAG K N V E R S 0 1 2 2 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 12 0 1457.6899 P10644;K7EPB2;K7EIE5;K7EID3;K7EJ40;K7EK41 P10644 135 146 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 0.002732 47.938 By MS/MS 2 1.092 0.94491 13.969 2 Median NaN NaN NaN 0 0 Median 1.092 0.94491 13.969 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6993500 3177600 3815900 0 0 0 6993500 3177600 3815900 0 0 0 0 0 0 0 0 0 0 0 0 26654 1945 28072 141758;141759 142707 142707 1 NVLGHMQQGGAPSPFDR QLYSEEGKGVFDCRKNVLGHMQQGGAPSPF LGHMQQGGAPSPFDRNFGTKISARAMEWIT K N V D R N 1 1 1 1 0 2 0 3 1 0 1 0 1 1 2 1 0 0 0 1 0 0 17 0 1809.8581 Q01813;B1APP6;H0Y757 Q01813 667 683 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 3.6976E-13 119.69 By MS/MS By MS/MS By matching 7 3 1 0.93449 0.85785 13.383 10 Median 0.8755 0.92694 16.219 7 0 Median 0.9829 0.85439 4.0635 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114580000 58550000 56028000 99941000 51755000 48186000 12704000 5957700 6746500 1932600 837330 1095300 0 0 0 0 0 0 0 0 0 26655 2692 28073;28074 141760;141761;141762;141763;141764;141765;141766;141767;141768;141769;141770 142708;142709;142710;142711;142712;142713;142714 142711 1387 7 NVLGLVPQALPK VLPGGTATSPKMIAKNVLGLVPQALPKADG IAKNVLGLVPQALPKADGRAGLGTGGQKVN K N V P K A 1 0 1 0 0 1 0 1 0 0 3 1 0 0 2 0 0 0 0 2 0 0 12 0 1247.7602 Q8N1G0;F8WCX2;H0Y5I5 Q8N1G0 440 451 ZNF687 Zinc finger protein 687 yes no 2 0.025762 30.254 By MS/MS By matching By matching 1 2 2 0.76457 0.79302 15.649 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73142 0.79302 NaN 1 0 Median 1.1298 1.0033 3.3135 2 0 Median 0.72379 0.7485 6.8739 2 0 Median NaN NaN NaN 0 0 Median 5872100 3345300 2526800 0 0 0 0 0 0 4218700 2446300 1772400 289690 126110 163570 1363700 772860 590850 0 0 0 26656 3357 28075 141771;141772;141773;141774;141775 142715 142715 1 NVLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMR GVCLGMQLAVVEFSRNVLGWQDANSTEFDP DMPEHNPGQMGGTMRLGKRRTLFQTKNSVM R N V M R L 1 1 3 3 0 2 2 4 2 0 1 0 3 1 4 2 4 1 0 4 0 0 38 0 4150.8571 P17812;A0A3B3IRI2;B4E1E0 P17812 412 449 CTPS1 CTP synthase 1;CTP synthase yes no 4 6.7931E-06 46.034 By MS/MS 1 0.55825 0.5315 NaN 1 Median 0.55825 0.5315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10768000 8631500 2136800 10768000 8631500 2136800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26657 2046 28076 141776 142716 142716 1 NVLIEVNPQTR LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT HTQKNVLIEVNPQTRIPRTFDRFCGLMVQL K N V T R I 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1281.7041 Q92979;V9GYP5;A0A087WWQ2;A0A087WVM7 Q92979 115 125 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.00015157 105.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 0.949 0.87998 9.7795 6 Median 0.95545 0.90319 NaN 1 0 Median 0.90124 0.76196 NaN 1 0 Median 0.97599 0.9371 NaN 1 0 Median 1.0288 0.85736 NaN 1 0 Median 0.92749 0.93627 NaN 1 0 Median 0.94259 0.75681 NaN 1 0 Median 102850000 52593000 50259000 6474200 3485400 2988800 4061100 2361300 1699900 38985000 19624000 19362000 18245000 9228700 9016500 24313000 12544000 11769000 10773000 5349700 5423600 26658 3571 28077 141777;141778;141779;141780;141781;141782;141783 142717;142718;142719;142720;142721;142722;142723;142724;142725;142726;142727;142728;142729;142730;142731;142732 142717 16 NVLITDFFGSVR STPGHRTDLFQRDPKNVLITDFFGSVRKVE DPKNVLITDFFGSVRKVEITTETIKLQQDS K N V V R K 0 1 1 1 0 0 0 1 0 1 1 0 0 2 0 1 1 0 0 2 0 0 12 0 1366.7245 Q92643;A6NEM5;B1AK81 Q92643 297 308 PIGK GPI-anchor transamidase yes no 2 0.0038247 45.137 By matching By MS/MS 1 1 1.2916 1.245 10.562 2 Median NaN NaN NaN 0 0 Median 1.5703 1.3415 NaN 1 0 Median 1.0623 1.1554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3872900 1742000 2131000 0 0 0 1792700 719750 1073000 2080200 1022200 1058000 0 0 0 0 0 0 0 0 0 26659 510 28078 141784;141785 142733;142734 142733 2 NVLIVEDIIDTGK IKVIGGDDLSTLTGKNVLIVEDIIDTGKTM GKNVLIVEDIIDTGKTMQTLLSLVRQYNPK K N V G K T 0 0 1 2 0 0 1 1 0 3 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1427.7872 P00492 P00492 129 141 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.00027719 78.653 By MS/MS By matching By matching By matching 2 2 1 1 1.1301 0.97075 39.067 6 Median 0.72706 0.69308 62.332 2 0 Median 1.1032 0.95446 16.121 2 0 Median 1.5162 1.4152 NaN 1 0 Median 1.0952 0.88096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54352000 24660000 29692000 53358000 24265000 29094000 191840 98491 93354 679090 238670 440410 123240 58360 64877 0 0 0 0 0 0 26660 1822 28079 141786;141787;141788;141789;141790;141791 142735;142736 142736 2 NVLLDPQLVPGGGASEMAVAHALTEK SEVERNLQDAMQVCRNVLLDPQLVPGGGAS GGASEMAVAHALTEKSKAMTGVEQWPYRAV R N V E K S 4 0 1 1 0 1 2 3 1 0 4 1 1 0 2 1 1 0 0 3 0 0 26 0 2616.3581 P49368;B4DUR8 P49368 400 425 CCT3 T-complex protein 1 subunit gamma yes no 3 8.3476E-09 46.307 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1 0.91732 0.81956 14.694 7 Median 0.79387 0.7292 NaN 1 0 Median 0.8897 0.75484 6.4402 2 0 Median 0.86981 0.84309 NaN 1 0 Median 0.94347 0.81956 NaN 1 0 Median 1.1582 1.1155 NaN 1 0 Median 1.0337 0.87648 NaN 1 0 Median 189120000 98067000 91053000 149710000 77215000 72500000 18756000 10249000 8507700 18336000 9565000 8771400 155090 73163 81924 1196300 510830 685480 960930 454290 506640 26661 2379 28080 141792;141793;141794;141795;141796;141797;141798 142737;142738;142739;142740;142741;142742;142743;142744;142745;142746;142747 142738 11 NVLLLGEDGAGK SEVSTRSRSKLPAGKNVLLLGEDGAGKTSL AGKNVLLLGEDGAGKTSLIRKIQGIEEYKK K N V G K T 1 0 1 1 0 0 1 3 0 0 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1184.6401 Q9Y6G9 Q9Y6G9 69 80 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes yes 2 0.00062624 65.5 By MS/MS By MS/MS 1 2 0.89175 0.86666 9.3041 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89175 0.86666 NaN 1 0 Median 0.93136 0.79872 11.345 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14315000 7709500 6605300 0 0 0 0 0 0 11283000 6185900 5097300 3031600 1523600 1508000 0 0 0 0 0 0 26662 4491 28081 141799;141800;141801 142748;142749;142750;142751 142748 4 NVLLNNSEK EGKKRQLYMVSKELRNVLLNNSEKMKVINT VSKELRNVLLNNSEKMKVINTGIKVWCRNN R N V E K M 0 0 3 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1029.5455 Q08J23 Q08J23 569 577 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.00065105 107.01 By MS/MS By MS/MS 2 1 1.2052 1.0236 11.612 3 Plateau 1.0242 1.0033 2.8324 2 0 Median 1.3997 1.2231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14479000 6646400 7833000 5391900 2575600 2816300 9087500 4070800 5016700 0 0 0 0 0 0 0 0 0 0 0 0 26663 2745 28082 141802;141803;141804 142752;142753;142754;142755 142755 4 NVLLNSLQK GQKESTLHLINAEEKNVLLNSLQKEDKSPE INAEEKNVLLNSLQKEDKSPETGTAGGSST K N V Q K E 0 0 2 0 0 1 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 1027.6026 Q8NFC6 Q8NFC6 2463 2471 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.0028118 69.423 By matching By MS/MS By MS/MS 2 2 2 0.99514 0.95007 14.454 6 Median 0.85305 0.8516 14.663 2 0 Median NaN NaN NaN 0 0 Median 0.98876 0.99983 19.471 2 0 Median 1.0938 1.0148 8.5116 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18637000 9489800 9146900 8995500 4949100 4046500 0 0 0 7791000 3657900 4133000 1850200 882790 967380 0 0 0 0 0 0 26664 3434 28083 141805;141806;141807;141808;141809;141810 142756;142757 142756 2 NVLLTGATGFLGK ______________________________ GKNVLLTGATGFLGKVLLEKLLRSCPKVNS K N V G K V 1 0 1 0 0 0 0 3 0 0 3 1 0 1 0 0 2 0 0 1 0 0 13 0 1289.7343 E9PNW8;Q8WVX9 E9PNW8 12 24 FAR1 Fatty acyl-CoA reductase 1 yes no 2 0.0015148 69.979 By MS/MS 1 1.7018 1.4473 NaN 1 Median NaN NaN NaN 0 0 Median 1.7018 1.4473 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5730400 2348500 3382000 0 0 0 5730400 2348500 3382000 0 0 0 0 0 0 0 0 0 0 0 0 26665 976 28084 141811 142758 142758 1 NVLQFTEEKEAFISEEEIAK SKENKMDMTSPEQSRNVLQFTEEKEAFISE TEEKEAFISEEEIAKYMKRGKGKYYCKICC R N V A K Y 2 0 1 0 0 1 6 0 0 2 1 2 0 2 0 1 1 0 0 1 0 0 20 1 2353.1689 Q96JM3 Q96JM3 681 700 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.017319 18.058 By matching By MS/MS 1 1 0.75884 0.85793 10.594 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80991 0.92466 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.711 0.796 NaN 1 0 Median NaN NaN NaN 0 0 Median 3230100 1841400 1388700 0 0 0 0 0 0 627300 365960 261340 0 0 0 2602800 1475500 1127300 0 0 0 26666 3687 28085 141812;141813 142759 142759 1 NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR AYVPSKQRDLKISRRNVLSDSRPAMAPGSS TTTAADATPSGSLARAGEAGKLEEVMQELR R N V A R A 8 2 1 2 0 0 0 3 1 0 3 0 1 0 4 7 4 0 0 1 0 0 37 1 3521.7169 Q9BR76 Q9BR76 410 446 CORO1B Coronin-1B yes yes 4 8.6915E-43 88.241 By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 0.50627 0.53035 23.208 6 Median 0.50627 0.53035 3.5898 2 1 Median 0.55633 0.51147 49.523 2 0 Median 0.45635 0.49289 NaN 1 1 Median 0.65114 0.5991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54241000 38662000 15579000 28448000 19919000 8529300 3572800 2085200 1487600 16770000 13670000 3100500 5450200 2988300 2462000 0 0 0 0 0 0 26667 3792 28086 141814;141815;141816;141817;141818;141819 142760;142761;142762;142763;142764 142760 5 NVLSEYQQRPQR TLLNRLEGDQISSPRNVLSEYQQRPQRLVS SPRNVLSEYQQRPQRLVSYFIKKKLSKA__ R N V Q R L 0 2 1 0 0 3 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 12 1 1516.7746 Q16831 Q16831 286 297 UPP1 Uridine phosphorylase 1 yes yes 3 0.0011253 68.069 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26668 2998 28087 141820 142765 142765 1 NVLSLTNK PCTSEQNCTSPFSYKNVLSLTNKGEVFNEL TSPFSYKNVLSLTNKGEVFNELVGKQRISG K N V N K G 0 0 2 0 0 0 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 8 0 887.50763 P05556 P05556 221 228 ITGB1 Integrin beta-1 yes yes 2 0.0028873 90.777 By MS/MS 1 0.73543 0.62189 NaN 1 Median NaN NaN NaN 0 0 Median 0.73543 0.62189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12598000 7675800 4922000 0 0 0 12598000 7675800 4922000 0 0 0 0 0 0 0 0 0 0 0 0 26669 1868 28088 141821 142766 142766 1 NVLSLTNKGEVFNELVGK PCTSEQNCTSPFSYKNVLSLTNKGEVFNEL SLTNKGEVFNELVGKQRISGNLDSPEGGFD K N V G K Q 0 0 3 0 0 0 2 2 0 0 3 2 0 1 0 1 1 0 0 3 0 0 18 1 1960.0629 P05556 P05556 221 238 ITGB1 Integrin beta-1 yes yes 2;3 0.00010449 44.299 By MS/MS By MS/MS 3 3 1.146 1.1255 6.9021 6 Median 1.0866 1.137 8.0905 3 0 Median 1.1968 1.1141 6.645 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32535000 14557000 17978000 24303000 11037000 13265000 8232600 3519700 4713000 0 0 0 0 0 0 0 0 0 0 0 0 26670 1868 28089 141822;141823;141824;141825;141826;141827 142767;142768;142769;142770;142771;142772 142767 6 NVLSVMFR IHRIPTNEHLRPHTKNVLSVMFRFLETENE HLRPHTKNVLSVMFRFLETENEENVLICLR K N V F R F 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 2 0 0 8 0 964.51642 F2Z2U4;Q9Y4A5 F2Z2U4 112 119 TRRAP Transformation/transcription domain-associated protein yes no 2 0.026777 41.652 By MS/MS By matching 2 1 0.8583 0.90317 9.6571 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83298 0.90231 0.13452 2 0 Median 1.2262 1.0666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17152000 8907900 8244500 0 0 0 0 0 0 16374000 8468300 7906200 777980 439660 338320 0 0 0 0 0 0 26671 991 28090 141828;141829;141830 142773;142774 142773 2 NVLTESAR VIDHTKGQPSEGESRNVLTESARIARGKIT PSEGESRNVLTESARIARGKITDLANLSAA R N V A R I 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 0 888.46649 A0A096LPI6;P0DPI2;A0A0B4J2D5;A0A096LNH5;H7C1F6;H7C2G3;A0A096LP73;A0A2R8YDR7;F2Z2Q0;A0A096LP12;A0A096LNJ1;A0A2R8Y6K9 A0A096LPI6 115 122 C21orf33 yes no 2 0.0052175 77.058 By MS/MS By matching 1 1 1.048 0.98965 19.383 2 Median 0.91253 0.86289 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2036 1.135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8856900 4860600 3996300 6749400 3708100 3041300 0 0 0 2107500 1152500 954970 0 0 0 0 0 0 0 0 0 26672 144 28091 141831;141832 142775;142776 142776 2 NVLTNTQSENER VRKVLELQTELKQLRNVLTNTQSENERLAS QLRNVLTNTQSENERLASVAQELKEINQNV R N V E R L 0 1 3 0 0 1 2 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 12 0 1403.6641 Q8TD16 Q8TD16 130 141 BICD2 Protein bicaudal D homolog 2 yes yes 2 0.0040776 66.435 By MS/MS 1 1.499 1.3347 NaN 1 Median NaN NaN NaN 0 0 Median 1.499 1.3347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1133200 460150 673020 0 0 0 1133200 460150 673020 0 0 0 0 0 0 0 0 0 0 0 0 26673 3468 28092 141833 142777 142777 1 NVLVSEDNVAK YLEGNNFVHRDLAARNVLVSEDNVAKVSDF LAARNVLVSEDNVAKVSDFGLTKEASSTQD R N V A K V 1 0 2 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 3 0 0 11 0 1186.6194 P41240 P41240 319 329 CSK Tyrosine-protein kinase CSK yes yes 2 0.00013548 86.882 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3477 1.2234 13.934 4 Linear 0.91745 0.86113 NaN 1 0 Median 1.0955 0.93059 NaN 1 0 Median 1.1027 1.0747 NaN 1 0 Median 1.3054 1.1733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31394000 14595000 16799000 6588500 3353900 3234600 6881700 3124200 3757500 7654200 3829600 3824600 10270000 4287300 5982600 0 0 0 0 0 0 26674 2300 28093 141834;141835;141836;141837 142778;142779;142780;142781;142782;142783;142784;142785 142785 8 NVMEEGKDFQPSR WPAKQYPLVTPNEERNVMEEGKDFQPSRST ERNVMEEGKDFQPSRSTAQQELDGKPASPT R N V S R S 0 1 1 1 0 1 2 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 13 1 1535.7038 P35606;H0YAC7 P35606 834 846 COPB2 Coatomer subunit beta yes no 2;3 3.3803E-06 164.43 By MS/MS By MS/MS By MS/MS 4 4 1 0.93315 0.94578 46.957 9 Median 0.91535 1.0152 5.3776 4 0 Linear 1.1614 1.1161 74.802 4 1 Median NaN NaN NaN 0 0 Median 1.3613 1.2924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98720000 48840000 49880000 51582000 26426000 25156000 45411000 21633000 23778000 0 0 0 1726000 780310 945710 0 0 0 0 0 0 26675 2246 28094 141838;141839;141840;141841;141842;141843;141844;141845;141846 142786;142787;142788;142789;142790;142791;142792;142793;142794;142795 142793 10 NVMEQFNPGLR RGPEEVNRLTESTYRNVMEQFNPGLRNLIN STYRNVMEQFNPGLRNLINLGKNYEKAVNA R N V L R N 0 1 2 0 0 1 1 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 11 0 1303.6343 Q9UHR4 Q9UHR4 18 28 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 0.00011207 123.92 By MS/MS By matching By MS/MS By MS/MS 2 1 1 3 1.066 0.93509 33.16 7 Median 0.84276 0.83221 16.484 2 0 Median 1.0701 0.93789 NaN 1 0 Median 1.033 1.0422 NaN 1 0 Median 1.0681 0.90872 48.479 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15987000 7956300 8030800 4911500 2600900 2310600 700650 340080 360570 9113100 4436000 4677100 1261900 579370 682500 0 0 0 0 0 0 26676 4281 28095 141847;141848;141849;141850;141851;141852;141853 142796;142797;142798;142799 142798 4 NVMILTNPVAAK LIAKLKSDGIPMYKRNVMILTNPVAAKKNV YKRNVMILTNPVAAKKNVSINTVTYEWAPP R N V A K K 2 0 2 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 2 0 0 12 0 1269.7115 Q9UGI8;F8W7T0 Q9UGI8 90 101 TES Testin yes no 2 0.0012368 75.294 By MS/MS 3 1.105 0.99057 2.4418 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.105 0.99057 2.4418 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13084000 5898000 7185800 0 0 0 0 0 0 0 0 0 13084000 5898000 7185800 0 0 0 0 0 0 26677 4263 28096;28097 141854;141855;141856 142800;142801;142802 142800 1913 3 NVMLLPVGSADDGAHSQNEK GSIPVTLTFQEATGKNVMLLPVGSADDGAH PVGSADDGAHSQNEKLNRYNYIEGTKMLAA K N V E K L 2 0 2 2 0 1 1 2 1 0 2 1 1 0 1 2 0 0 0 2 0 0 20 0 2080.9848 Q96KP4 Q96KP4 431 450 CNDP2 Cytosolic non-specific dipeptidase yes yes 3 2.2333E-09 83.213 By MS/MS 1 0.85675 0.79403 NaN 1 Median 0.85675 0.79403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12311000 6928100 5383100 12311000 6928100 5383100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26678 3696 28098 141857 142803;142804 142803 2 NVMNDAWR CKDREVNAVDSEHEKNVMNDAWRLFQLEKA VDSEHEKNVMNDAWRLFQLEKATGNPKHPF K N V W R L 1 1 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 8 0 1004.4498 P14735;A0A3B3ISG5;Q5T5N3 P14735 193 200 IDE Insulin-degrading enzyme yes no 2 0.031031 38.792 By MS/MS 1 1.2367 1.0559 NaN 1 Median NaN NaN NaN 0 0 Median 1.2367 1.0559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3094600 1367600 1727000 0 0 0 3094600 1367600 1727000 0 0 0 0 0 0 0 0 0 0 0 0 26679 423 28099 141858 142805;142806 142805 2 NVMVEPHR RGRGRGGKRGNQSGKNVMVEPHRHEGVFIC RGNQSGKNVMVEPHRHEGVFICRGKEDALV K N V H R H 0 1 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 2 0 0 8 0 980.48618 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R2U2;M0R1H0;M0R2B0;M0QXC9 P22087 85 92 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2 0.020409 66.682 By MS/MS By MS/MS 1 1 0.88625 0.90675 20.8 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0692 1.0504 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.73458 0.78273 NaN 1 0 Median NaN NaN NaN 0 0 Median 4059500 1733800 2325700 0 0 0 0 0 0 2647500 997520 1650000 0 0 0 1412000 736250 675730 0 0 0 26680 2097 28100 141859;141860 142807;142808 142807 2 NVMVEPHRHEGVFICR RGRGRGGKRGNQSGKNVMVEPHRHEGVFIC VMVEPHRHEGVFICRGKEDALVTKNLVPGE K N V C R G 0 2 1 0 1 0 2 1 2 1 0 0 1 1 1 0 0 0 0 3 0 0 16 1 1978.9618 P22087;M0QXL5;M0R0P1;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 85 100 FBL rRNA 2-O-methyltransferase fibrillarin yes no 4 0.00017143 44.925 By MS/MS By matching 1 1 0.91603 0.9703 13.62 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0236 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81975 0.88121 NaN 1 0 Median NaN NaN NaN 0 0 Median 9665000 4718200 4946800 0 0 0 0 0 0 4932500 2089700 2842900 0 0 0 4732500 2628600 2103900 0 0 0 26681 2097 28101 141861;141862 142809 142809 1 NVMYFGGNSDASTIK LDRKNWRIFKGNSTRNVMYFGGNSDASTIK NVMYFGGNSDASTIKENQIDPPVVARYIRI R N V I K E 1 0 2 1 0 0 0 2 0 1 0 1 1 1 0 2 1 0 1 1 0 0 15 0 1602.7348 CON__Q28107 CON__Q28107 2001 2015 yes yes 2 0.00031947 64.55 By MS/MS 1 0.072065 0.071364 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.072065 0.071364 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3328100 3172400 155670 0 0 0 0 0 0 3328100 3172400 155670 0 0 0 0 0 0 0 0 0 + 26682 772 28102 141863 142810 142810 1 NVNANLLAEAGTSQDGGDAGTSHDFK PDLDGALLSGPDGDRNVNANLLAEAGTSQD TSQDGGDAGTSHDFKYGLMPGPSNDFKYGL R N V F K Y 4 0 3 3 0 1 1 4 1 0 2 1 0 1 0 2 2 0 0 1 0 0 26 0 2588.1739 Q96DT7 Q96DT7 635 660 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 3 9.9995E-20 70.533 By MS/MS By matching 2 1 0.97904 1.0752 8.5576 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93406 1.0129 8.4451 2 0 Median 1.3434 1.1263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16036000 8112300 7923300 0 0 0 0 0 0 14889000 7593700 7295800 1146100 518640 627490 0 0 0 0 0 0 26683 3628 28103 141864;141865;141866 142811 142811 1 NVNIQNFHISWK EGLLLWCQRKTAPYKNVNIQNFHISWKDGL PYKNVNIQNFHISWKDGLGFCALIHRHRPE K N V W K D 0 0 3 0 0 1 0 0 1 2 0 1 0 1 0 1 0 1 0 1 0 0 12 0 1498.7681 P12814;H9KV75;G3V2W4;G3V2N5;G3V2X9 P12814 163 174 ACTN1 Alpha-actinin-1 yes no 2;3 0.0068731 30.438 By MS/MS By matching By matching 3 3 1 1.1363 1.0341 44.312 7 Median 1.3885 1.357 44.931 3 0 Plateau 1.0485 0.94633 5.8158 3 0 Median 2.4353 2.5404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10071000 4591500 5479500 8031700 3713400 4318300 1444200 693310 750910 595140 184810 410330 0 0 0 0 0 0 0 0 0 26684 1983 28104 141867;141868;141869;141870;141871;141872;141873 142812;142813;142814 142813 3 NVNQSLLELHK ESGLNAMECALHLEKNVNQSLLELHKLATD HLEKNVNQSLLELHKLATDKNDPHLCDFIE K N V H K L 0 0 2 0 0 1 1 0 1 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1293.7041 P02794;G3V192;G3V1D1;E9PPQ4 P02794 110 120 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 2;3 5.1018E-05 141.88 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 6 2 1 2 1 1.1225 1.0325 39.092 17 Median 1.256 1.1613 13.034 5 0 Median 0.72439 0.60832 23.754 6 1 Median 1.3818 1.3086 12.964 2 0 Median 1.4133 1.1686 NaN 1 0 Median 0.72939 0.7656 15.564 2 0 Median 0.45987 0.41572 NaN 1 0 Median 177420000 86616000 90807000 99817000 43323000 56494000 60838000 35330000 25508000 9322300 3817500 5504800 1391300 631950 759330 5423500 3126600 2296900 631060 387170 243900 26685 1838 28105 141874;141875;141876;141877;141878;141879;141880;141881;141882;141883;141884;141885;141886;141887;141888;141889;141890 142815;142816;142817;142818;142819;142820;142821;142822;142823;142824;142825;142826;142827;142828;142829;142830;142831;142832;142833 142829 19 NVNSNLITWNR HLLDYVMTTLLFSDKNVNSNLITWNRVVLL FSDKNVNSNLITWNRVVLLHGPPGTGKTSL K N V N R V 0 1 4 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 1 0 0 11 0 1329.6789 Q15645;H0YAL2 Q15645 163 173 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 0.040515 27.742 By matching By MS/MS 1 1 1.6216 1.4374 3.3298 2 Median 1.5035 1.404 NaN 1 0 Median 1.7489 1.4717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57711000 17064000 40647000 46979000 10973000 36006000 10732000 6091100 4641300 0 0 0 0 0 0 0 0 0 0 0 0 26686 2960 28106 141891;141892 142834 142834 1 NVNTALNTTQIPSSIEDIFNDDR NGAPEDEENFEEAIKNVNTALNTTQIPSSI TQIPSSIEDIFNDDRCINITKQTPSFWILA K N V D R C 1 1 4 3 0 1 1 0 0 3 1 0 0 1 1 2 3 0 0 1 0 0 23 0 2576.2354 Q13564 Q13564 271 293 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes yes 3 0.0059092 26.417 By MS/MS 1 3.4346 3.315 NaN 1 Median 3.4346 3.315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6237000 1443900 4793200 6237000 1443900 4793200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26687 2825 28107 141893 142835 142835 1 NVNVQNFHISWK EGLLLWCQRKTAPYKNVNVQNFHISWKDGL PYKNVNVQNFHISWKDGLAFNALIHRHRPE K N V W K D 0 0 3 0 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 2 0 0 12 0 1484.7524 O43707 O43707 182 193 ACTN4 Alpha-actinin-4 yes yes 2;3 5.1455E-06 100.48 By MS/MS By matching By MS/MS By matching By matching 3 4 1 2 1 0.62991 0.61342 27.259 11 Median 0.66398 0.63623 39.115 3 0 Median 0.67852 0.57975 33.056 4 0 Median 0.55952 0.61342 NaN 1 0 Median 0.57303 0.48769 1.5136 2 0 Median 0.68369 0.70219 NaN 1 0 Median NaN NaN NaN 0 0 Median 97733000 57912000 39821000 78128000 45945000 32183000 15014000 9078900 5935200 3060500 2062200 998240 829310 492120 337190 700870 333290 367580 0 0 0 26688 1585 28108 141894;141895;141896;141897;141898;141899;141900;141901;141902;141903;141904 142836;142837;142838;142839;142840;142841 142837 6 NVPFSELNLK AKQNPLKGKRKETLKNVPFSELNLKKKKGK KETLKNVPFSELNLKKKKGKTSTPRGVEGE K N V L K K 0 0 2 0 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 10 0 1159.6237 Q14966 Q14966 1571 1580 ZNF638 Zinc finger protein 638 yes yes 2 0.0087066 46.158 By MS/MS By matching 1 1 0.9715 0.96466 13.397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78816 0.87747 NaN 1 0 Median 1.1975 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6294000 3465100 2829000 0 0 0 0 0 0 6016800 3346600 2670100 277250 118410 158840 0 0 0 0 0 0 26689 2903 28109 141905;141906 142842;142843 142842 2 NVPGFLPTNDLSQPTGFLAQPMK GVDPKQLAVYEEFARNVPGFLPTNDLSQPT NDLSQPTGFLAQPMKQAWATDDVAQIYDKC R N V M K Q 1 0 2 1 0 2 0 2 0 0 3 1 1 2 4 1 2 0 0 1 0 0 23 0 2471.2519 A5YKK6 A5YKK6 1578 1600 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.059205 7.2761 By MS/MS By matching 1 1 0.47381 0.48955 3.3519 2 Median 0.49677 0.47809 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45192 0.50129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4420400 3066000 1354400 3288400 2337200 951230 0 0 0 1132000 728790 403180 0 0 0 0 0 0 0 0 0 26690 503 28110 141907;141908 142844;142845;142846 142845 3 NVPNLHVMK KKDVHMPKHPELADKNVPNLHVMKAMQSLK PELADKNVPNLHVMKAMQSLKSRGYVKEQF K N V M K A 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 2 0 0 9 0 1050.5644 P46783;F6U211;A0A2R8Y7H1;A0A2R8YFH6;A0A2R8Y6L3;Q9NQ39;A0A1W2PQS6;S4R435 P46783 39 47 RPS10;RPS10P5;RPS10-NUDT3 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like no no 2 0.0032096 66.682 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.0713 0.903 23.131 6 Median 0.9494 0.89186 NaN 1 0 Median 0.95039 0.81399 12.215 2 1 Median 1.3667 1.2847 NaN 1 0 Median 1.104 0.91427 NaN 1 0 Median 1.1538 1.3383 NaN 1 0 Median NaN NaN NaN 0 0 Median 82472000 40848000 41624000 44918000 23120000 21797000 28300000 14437000 13863000 7551900 2564900 4987000 397950 162850 235100 1304700 562920 741740 0 0 0 26691 2346;345 28111;28112 141909;141910;141911;141912;141913;141914 142847;142848;142849;142850;142851;142852;142853;142854;142855;142856 142853 167 10 NVPNWHR CAIIMFDVTSRVTYKNVPNWHRDLVRVCEN VTSRVTYKNVPNWHRDLVRVCENIPIVLCG K N V H R D 0 1 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 7 0 921.45693 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 117 123 RAN GTP-binding nuclear protein Ran yes no 2 0.0017395 109.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 1.0807 0.93538 12.477 9 Median 0.92089 0.87089 31.778 2 1 Median NaN NaN NaN 0 0 Median 1.0146 0.97415 5.7437 2 0 Median 1.1117 0.90576 0.1634 2 0 Median 0.96316 0.96625 NaN 1 0 Median 1.1524 0.92152 6.9779 2 0 Median 118660000 62137000 56526000 23260000 14220000 9040000 0 0 0 80782000 40614000 40168000 4582600 2166800 2415800 7930000 4099400 3830600 2108900 1037100 1071800 26692 623 28113 141915;141916;141917;141918;141919;141920;141921;141922;141923 142857;142858;142859;142860;142861;142862;142863;142864;142865;142866;142867;142868;142869 142860 13 NVPPGLDEYNPFSDSR LNNPFKDPSVTQVTRNVPPGLDEYNPFSDS VPPGLDEYNPFSDSRTPPPGGVKMPNVPNT R N V S R T 0 1 2 2 0 0 1 1 0 0 1 0 0 1 3 2 0 0 1 1 0 0 16 0 1805.822 O15126;A0A087WZA6 O15126 29 44 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 2 3.0686E-05 82.362 By MS/MS By matching 1 1 0.8725 0.8112 26.912 2 Median 0.6732 0.67064 NaN 1 0 Median 1.1308 0.98124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6692200 4258400 2433900 6256300 4132800 2123400 435940 125530 310410 0 0 0 0 0 0 0 0 0 0 0 0 26693 1522 28114 141924;141925 142870 142870 1 NVPQEESLEDSDVDADFK ELRKNKRDEHLLKKRNVPQEESLEDSDVDA QEESLEDSDVDADFKAQNVTLEAILQNATS R N V F K A 1 0 1 4 0 1 3 0 0 0 1 1 0 1 1 2 0 0 0 2 0 0 18 0 2035.8858 O00505 O00505 50 67 KPNA3 Importin subunit alpha-4 yes yes 2 3.1732E-05 50.145 By MS/MS By matching 1 1 0.89717 0.85358 3.1348 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84924 0.87271 NaN 1 0 Median 0.9478 0.83487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3144500 1718300 1426200 0 0 0 0 0 0 2892100 1595200 1296900 252380 123080 129300 0 0 0 0 0 0 26694 1469 28115 141926;141927 142871 142871 1 NVPQVVNVQELK SQAPAVNTLTESTLKNVPQVVNVQELKNNP TLKNVPQVVNVQELKNNPATPSTAMGSSVP K N V L K N 0 0 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 0 4 0 0 12 0 1365.7616 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1106 1117 NUP214 Nuclear pore complex protein Nup214 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 2 1 2 0.93833 0.88476 17.035 12 Median 0.87016 0.84139 NaN 1 0 Median 0.97535 0.86481 NaN 1 0 Median 0.89349 0.98132 22.906 5 1 Median 0.93459 0.81252 15.511 2 0 Median 0.99505 1.0415 NaN 1 0 Median 0.95117 0.80377 8.3164 2 0 Median 108440000 55974000 52463000 11601000 6292200 5308900 5238000 2577800 2660200 72094000 37372000 34723000 4400400 2029900 2370500 9833100 5125000 4708100 5270700 2578000 2692800 26695 467 28116 141928;141929;141930;141931;141932;141933;141934;141935;141936;141937;141938;141939 142872;142873;142874;142875;142876;142877;142878;142879;142880;142881;142882 142876 10 NVPVGFGESWKK IQRNKAAALLRLAARNVPVGFGESWKKHLS AARNVPVGFGESWKKHLSGEFGKPYFIKLM R N V K K H 0 0 1 0 0 0 1 2 0 0 0 2 0 1 1 1 0 1 0 2 0 0 12 1 1346.6983 P13051;Q68DM5;F5GYA2 P13051 89 100 UNG;DKFZp781L1143 Uracil-DNA glycosylase yes no 2 0.040215 44.309 By MS/MS 1 0.37244 0.32703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37244 0.32703 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229300 2746900 1482400 0 0 0 0 0 0 0 0 0 4229300 2746900 1482400 0 0 0 0 0 0 26696 1987 28117 141940 142883 142883 1 NVPVITGSK WVQKPIIFDCRSRPRNVPVITGSKDLQNVN CRSRPRNVPVITGSKDLQNVNITLRILFRP R N V S K D 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 2 0 0 9 0 913.52328 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2;D6RBK0 P35232 75 83 PHB Prohibitin yes no 2 0.0058461 56.378 By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 0.8845 0.86017 18.442 8 Median 0.76967 0.71185 9.8498 2 0 Median 1.2499 1.0497 9.1194 2 1 Median 0.88344 0.86017 2.0466 2 0 Median 0.99761 0.83583 25.935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56372000 28269000 28103000 39414000 20194000 19220000 8886300 4064500 4821800 6669200 3339700 3329400 1402100 670830 731240 0 0 0 0 0 0 26697 2233 28118 141941;141942;141943;141944;141945;141946;141947;141948 142884;142885;142886;142887;142888;142889 142884 6 NVPYGNIQSR DEYKNFYYAAVPSARNVPYGNIQSRLELRK VPSARNVPYGNIQSRLELRKKLSCKPFKWY R N V S R L 0 1 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 1 1 0 0 10 0 1146.5782 Q10471 Q10471 405 414 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 2 0.00048844 73.985 By MS/MS By MS/MS By matching 1 1 1 1.0219 0.88696 18.854 3 Plateau 1.0152 0.97545 NaN 1 0 Median 1.0249 0.88696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8311 0.67813 NaN 1 0 Median 15386000 8143800 7242500 7098900 3839800 3259000 7373500 3822900 3550700 0 0 0 0 0 0 0 0 0 913890 481030 432860 26698 2751 28119 141949;141950;141951 142890;142891 142891 2 NVPYVFVR PLEIILHLPLLCEDKNVPYVFVRSKQALGR PLLCEDKNVPYVFVRSKQALGRACGVSRPV K N V V R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 3 0 0 8 0 992.54435 P55769 P55769 77 84 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2 0.0040524 83.801 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 2 1.0669 0.9364 10.108 7 Median 1.0152 0.99042 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92476 0.93414 NaN 1 0 Median 1.1219 0.93138 0.75898 2 0 Median 1.1395 1.1623 NaN 1 0 Median 1.1204 0.90064 11.397 2 0 Median 51543000 26287000 25256000 3474500 1241200 2233300 0 0 0 34809000 18676000 16133000 7254900 3721700 3533200 2513800 1053200 1460700 3490900 1594900 1896000 26699 2501 28120 141952;141953;141954;141955;141956;141957;141958 142892;142893;142894;142895;142896;142897;142898;142899;142900 142895 9 NVQAEEMVEFSSGLK VLSIGDGIARVHGLRNVQAEEMVEFSSGLK NVQAEEMVEFSSGLKGMSLNLEPDNVGVVV R N V L K G 1 0 1 0 0 1 3 1 0 0 1 1 1 1 0 2 0 0 0 2 0 0 15 0 1666.7872 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 89 103 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 5.196E-10 108.37 By MS/MS By matching By MS/MS 2 2 1 1.0856 1.1133 19.251 5 Median 1.0894 1.0128 15.436 2 0 Median 1.3321 1.1554 32.62 2 0 Median 1.0856 1.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41911000 19942000 21969000 31190000 14976000 16215000 7685700 3446100 4239600 3035000 1520300 1514800 0 0 0 0 0 0 0 0 0 26700 2135 28121;28122 141959;141960;141961;141962;141963 142901;142902;142903;142904;142905 142903 893 5 NVQALEIELQSQLALK EQISSYKSEITELRRNVQALEIELQSQLAL VQALEIELQSQLALKQSLEASLAETEGRYC R N V L K Q 2 0 1 0 0 3 2 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1796.0044 P13645;CON__P13645 P13645 371 386 KRT10 Keratin, type I cytoskeletal 10 yes no 2 9.2721E-41 167.44 By MS/MS By MS/MS 3 1 0.020031 0.017351 223.01 2 Median NaN NaN NaN 0 0 Median 0.020031 0.017351 223.01 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31908000 31465000 443060 0 0 0 29267000 28824000 443060 0 0 0 2640800 2640800 0 0 0 0 0 0 0 + 26701 756 28123 141964;141965;141966;141967 142906;142907;142908;142909;142910 142907 5 NVQDAIADAEQR QRLQGEIAHVKKQCKNVQDAIADAEQRGEH QCKNVQDAIADAEQRGEHALKDARNKLNDL K N V Q R G 3 1 1 2 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1328.6321 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 436 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.5704E-52 201.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 9 11 6 6 0.10013 0.099188 109.23 38 Median 0.18375 0.17316 104.36 4 4 Median 0.065786 0.054396 63.031 6 6 Median 0.19248 0.20277 84.718 8 8 Median 0.03402 0.026833 83.744 9 7 Median 0.10998 0.11352 125.65 6 6 Median 0.10746 0.089916 96.762 5 4 Median 576330000 505700000 70633000 93800000 81724000 12075000 79253000 76120000 3132000 119120000 96696000 22425000 108880000 102400000 6481400 121870000 98468000 23400000 53407000 50288000 3119100 + 26702 764;765 28124 141968;141969;141970;141971;141972;141973;141974;141975;141976;141977;141978;141979;141980;141981;141982;141983;141984;141985;141986;141987;141988;141989;141990;141991;141992;141993;141994;141995;141996;141997;141998;141999;142000;142001;142002;142003;142004;142005;142006;142007;142008;142009;142010;142011;142012 142911;142912;142913;142914;142915;142916;142917;142918;142919;142920;142921;142922;142923;142924;142925;142926;142927;142928;142929;142930;142931;142932;142933;142934;142935;142936;142937;142938;142939;142940;142941;142942;142943;142944;142945;142946;142947;142948;142949;142950;142951;142952;142953;142954;142955 142918 45 NVQDAIADAEQRGEHALK QRLQGEIAHVKKQCKNVQDAIADAEQRGEH DAIADAEQRGEHALKDARNKLNDLEEALQQ K N V L K D 4 1 1 2 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 18 1 1963.9712 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 442 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3;4 1.4202E-11 94.09 By MS/MS By MS/MS 3 1 0.76307 0.74833 217.26 4 Median 1.1455 1.1886 266.06 3 3 Median 0.50833 0.47115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95602000 32808000 62794000 85091000 26573000 58517000 10511000 6234500 4276300 0 0 0 0 0 0 0 0 0 0 0 0 + 26703 764;765 28125 142013;142014;142015;142016 142956;142957;142958;142959 142957 4 NVQDAIADAEQRGEHALKDAR QRLQGEIAHVKKQCKNVQDAIADAEQRGEH ADAEQRGEHALKDARNKLNDLEEALQQAKE K N V A R N 5 2 1 3 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 21 2 2306.1363 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 445 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 0.0019556 36.523 By MS/MS By MS/MS 3 1 0.16004 0.17702 125.63 4 Median 0.13928 0.14211 150.8 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18389 0.2205 NaN 1 1 Median NaN NaN NaN 0 0 Median 27140000 23562000 3577800 19850000 17721000 2129000 0 0 0 0 0 0 0 0 0 7289400 5840600 1448900 0 0 0 + 26704 764;765 28126 142017;142018;142019;142020 142960;142961;142962;142963;142964;142965 142960 6 NVQLQENEIR IIQRLLEVRGSKPGKNVQLQENEIRGLCLK SKPGKNVQLQENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1241.6364 F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 F8VYE8 27 36 PPP1CC Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes no 2 1.4107E-25 167.33 By MS/MS By MS/MS 2 1 1.7682 1.5875 68.454 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6672 2.5759 NaN 1 1 Median 1.1723 0.97837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 198680000 43370000 155310000 0 0 0 0 0 0 159600000 26146000 133460000 39076000 17224000 21852000 0 0 0 0 0 0 26705 1074 28127 142021;142022;142023 142966;142967;142968;142969;142970 142966 5 NVQLSLLTER RVEDLVKQYFQTAEKNVQLSLLTERGMGEA QTAEKNVQLSLLTERGMGEAVQEFVDKEEK K N V E R G 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 10 0 1171.6561 P49959;F8W7U8 P49959 443 452 MRE11A Double-strand break repair protein MRE11A yes no 2 5.1551E-05 135.79 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 3 1 2 1.038 1.0604 34.15 9 Median 0.88443 0.84695 21.853 2 0 Median 0.50103 0.43459 NaN 1 0 Median 1.0183 1.0604 14.627 3 1 Median 1.2463 1.0741 NaN 1 0 Median 1.1578 1.1808 5.0872 2 0 Median NaN NaN NaN 0 0 Median 82853000 41040000 41813000 8782900 4502300 4280600 2562600 1727600 834990 57224000 28411000 28813000 5271900 2213600 3058300 9012500 4185500 4827000 0 0 0 26706 2407 28128 142024;142025;142026;142027;142028;142029;142030;142031;142032 142971;142972;142973;142974;142975;142976;142977;142978;142979 142979 9 NVQLTENEIR IIGRLLEVQGSRPGKNVQLTENEIRGLCLK SRPGKNVQLTENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1214.6255 P62136;E9PMD7;F5H1L6;F5H037 P62136 27 36 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 4.8324E-47 198.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 2 2 0.97138 0.83795 26.493 12 Median 0.99834 0.99116 NaN 1 0 Median 0.62516 0.52826 36.818 2 1 Median 1.0284 0.99613 23.581 3 1 Median 1.048 0.8756 1.297 2 0 Median 0.90995 0.90879 16.394 2 1 Median 0.93929 0.74902 3.2737 2 1 Median 155270000 73941000 81325000 7206400 3424900 3781500 20195000 10341000 9853500 72066000 34080000 37985000 39486000 17980000 21506000 14243000 6810100 7432400 2070100 1304300 765750 26707 2569 28129 142033;142034;142035;142036;142037;142038;142039;142040;142041;142042;142043;142044 142980;142981;142982;142983;142984;142985;142986;142987;142988;142989;142990;142991;142992;142993;142994;142995;142996 142990 17 NVQRPESVSDHMYR VGQLKRVPRTGWVYRNVQRPESVSDHMYRM RNVQRPESVSDHMYRMAVMAMVIKDDRLNK R N V Y R M 0 2 1 1 0 1 1 0 1 0 0 0 1 0 1 2 0 0 1 2 0 0 14 1 1716.8002 Q7Z4H3;V9GYS5;V9GZ04 Q7Z4H3 39 52 HDDC2 HD domain-containing protein 2 yes no 3;4 0.00076021 42.209 By MS/MS By MS/MS 2 2 1.0845 1.0333 20.294 4 Median 0.80819 0.8639 24.947 2 0 Median 1.2875 1.0934 7.6285 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13753000 7373300 6379500 9950800 5672300 4278600 3802000 1701000 2100900 0 0 0 0 0 0 0 0 0 0 0 0 26708 3245 28130 142045;142046;142047;142048 142997;142998;142999;143000 142999 4 NVQSVITTSAPNK EEEKANGVNPDSLLRNVQSVITTSAPNKGM LRNVQSVITTSAPNKGMEEGEDNLLCNLRE R N V N K G 1 0 2 0 0 1 0 0 0 1 0 1 0 0 1 2 2 0 0 2 0 0 13 0 1357.7201 J3KMZ7;Q9H0H0 J3KMZ7 957 969 INTS2 Integrator complex subunit 2 yes no 2 7.4802E-07 103.34 By MS/MS 1 0.73003 0.78372 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73003 0.78372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6466100 3842300 2623800 0 0 0 0 0 0 6466100 3842300 2623800 0 0 0 0 0 0 0 0 0 26709 1298 28131 142049 143001;143002 143002 2 NVQSVSIIDTELK GDYTWTEFDEPFLTRNVQSVSIIDTELKVK TRNVQSVSIIDTELKVKDSQPIDLSACTVA R N V L K V 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1444.7773 Q15645;H0YAL2 Q15645 69 81 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 2.7171E-05 93.058 By MS/MS By MS/MS By matching By matching 1 1 1 1 2.0549 1.8826 56.493 4 Median 1.1431 1.058 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7043 1.6741 NaN 1 0 Median 4.6027 4.1064 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4776 2.117 NaN 1 0 Median 20838000 8651600 12187000 14056000 6374200 7681600 0 0 0 5790300 2123600 3666700 696260 91246 605010 0 0 0 296070 62528 233540 26710 2960 28132 142050;142051;142052;142053 143003;143004 143003 1 NVQVFLISGGFR LTPGIRELVSRLQERNVQVFLISGGFRSIV QERNVQVFLISGGFRSIVEHVASKLNIPAT R N V F R S 0 1 1 0 0 1 0 2 0 1 1 0 0 2 0 1 0 0 0 2 0 0 12 0 1335.7299 C9JBI3;P78330 C9JBI3 102 113 PSPH Phosphoserine phosphatase yes no 2 0.032829 27.115 By matching By MS/MS 1 1 0.91289 0.81878 10.87 2 Median 0.80352 0.7582 NaN 1 0 Median 1.0372 0.8842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5379200 2629700 2749500 4456500 2183300 2273100 922700 446330 476370 0 0 0 0 0 0 0 0 0 0 0 0 26711 688 28133 142054;142055 143005 143005 1 NVRPDYLK LGIDVWEHAYYLQYKNVRPDYLKAIWNVIN AYYLQYKNVRPDYLKAIWNVINWENVTERY K N V L K A 0 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 8 1 1003.5451 P04179 P04179 195 202 SOD2 Superoxide dismutase [Mn], mitochondrial yes yes 2 0.020823 81.784 By MS/MS By matching By MS/MS 2 2 1 0.87765 0.9122 27.296 4 Median 0.77161 0.76551 25.891 2 0 Median 1.3327 1.2426 NaN 1 0 Median 0.87882 0.90515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10732000 5521700 5210400 5201000 2739500 2461400 2866300 1357700 1508600 2664800 1424500 1240300 0 0 0 0 0 0 0 0 0 26712 1845 28134 142056;142057;142058;142059;142060 143006;143007;143008 143007 3 NVSDYTPLSLAASGGYVNIIK VVELLLARGANKEHRNVSDYTPLSLAASGG PLSLAASGGYVNIIKILLNAGAEINSRTGS R N V I K I 2 0 2 1 0 0 0 2 0 2 2 1 0 0 1 3 1 0 2 2 0 0 21 0 2181.1317 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1064 1084 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 0.0011677 28.976 By MS/MS By matching 1 1 0.92504 0.95555 10.506 2 Median 0.92099 0.88713 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92911 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4224500 2050200 2174300 3662200 1764000 1898300 0 0 0 562290 286230 276050 0 0 0 0 0 0 0 0 0 26713 1197;3329 28135 142061;142062 143009 143009 1 NVSEELDR DLCEQFNSMEPNKQKNVSEELDRTPPEVSK MEPNKQKNVSEELDRTPPEVSKKLEDIRTR K N V D R T 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 960.45124 Q15393 Q15393 1192 1199 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.01337 53.166 By MS/MS By MS/MS By MS/MS 2 1 3 1.1358 0.99646 5.9274 6 Median NaN NaN NaN 0 0 Median 1.0976 0.92799 3.8016 2 0 Median 0.9377 1.0494 NaN 1 0 Median 1.1744 1.0006 3.4129 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8071500 3894700 4176800 0 0 0 3083100 1463900 1619200 1700900 836720 864170 3287500 1594100 1693400 0 0 0 0 0 0 26714 2946 28136 142063;142064;142065;142066;142067;142068 143010;143011;143012;143013;143014 143010 5 NVSEELDRTPPEVSK DLCEQFNSMEPNKQKNVSEELDRTPPEVSK NVSEELDRTPPEVSKKLEDIRTRYAF____ K N V S K K 0 1 1 1 0 0 3 0 0 0 1 1 0 0 2 2 1 0 0 2 0 0 15 1 1698.8424 Q15393 Q15393 1192 1206 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 2.1193E-05 82.663 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 3 2 3 2 0.664 0.73859 27.842 15 Median 0.63535 0.65104 30.459 4 1 Median 0.94782 0.87194 NaN 1 0 Median 0.6366 0.73859 3.593 3 0 Median 0.46403 0.50046 60.513 2 0 Median 0.72485 0.74333 16.89 3 1 Median 0.92078 0.77064 10.61 2 0 Median 201560000 116770000 84787000 48890000 26604000 22286000 29674000 16550000 13124000 100420000 60760000 39664000 5673600 3574800 2098900 15597000 8715500 6881700 1301500 568500 733010 26715 2946 28137 142069;142070;142071;142072;142073;142074;142075;142076;142077;142078;142079;142080;142081;142082;142083 143015;143016;143017;143018;143019;143020;143021;143022;143023;143024;143025;143026;143027;143028 143027 14 NVSEELDRTPPEVSKK DLCEQFNSMEPNKQKNVSEELDRTPPEVSK VSEELDRTPPEVSKKLEDIRTRYAF_____ K N V K K L 0 1 1 1 0 0 3 0 0 0 1 2 0 0 2 2 1 0 0 2 0 0 16 2 1826.9374 Q15393 Q15393 1192 1207 SF3B3 Splicing factor 3B subunit 3 yes yes 3 0.069788 9.9222 By MS/MS 1 0.67224 0.89208 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67224 0.89208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4189300 2443400 1746000 0 0 0 0 0 0 4189300 2443400 1746000 0 0 0 0 0 0 0 0 0 26716 2946 28138 142084 143029 143029 1 NVSGISFTENMGSSQQK GQTIGPRNTFNFGSKNVSGISFTENMGSSQ SGISFTENMGSSQQKNSGFRRSDDMFTFHG K N V Q K N 0 0 2 0 0 2 1 2 0 1 0 1 1 1 0 4 1 0 0 1 0 0 17 0 1812.8312 P49792 P49792 1105 1121 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.248E-31 200.44 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 4 1.066 1.0696 15.899 13 Median 1.4037 1.3646 30.763 2 0 Median 1.1988 1.0437 23.379 2 0 Median 1.0053 1.0696 7.9031 5 0 Median 1.0715 1.0339 8.9076 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121350000 59666000 61685000 9598200 3485100 6113100 2755300 1504200 1251100 100400000 50616000 49780000 8601400 4060400 4541100 0 0 0 0 0 0 26717 2401 28139;28140 142085;142086;142087;142088;142089;142090;142091;142092;142093;142094;142095;142096;142097 143030;143031;143032;143033;143034;143035;143036;143037;143038;143039;143040;143041;143042;143043;143044;143045 143034 1115 16 NVSIGIVGK ALRETLPAEQDLTTKNVSIGIVGKDLEFTI QDLTTKNVSIGIVGKDLEFTIYDDDDVSPF K N V G K D 0 0 1 0 0 0 0 2 0 2 0 1 0 0 0 1 0 0 0 2 0 0 9 0 885.52837 P25786;F5GX11 P25786 209 217 PSMA1 Proteasome subunit alpha type-1 yes no 2 0.006571 54.157 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 3 1 1.1807 1.0208 29.413 11 Median 1.2008 1.0863 15.024 3 0 Plateau 1.5844 1.3216 30.259 2 0 Median 1.0867 1.0676 6.3415 2 0 Median 1.2169 1.0037 19.951 3 0 Median NaN NaN NaN 0 0 Median 0.61932 0.50436 NaN 1 0 Median 122920000 56498000 66419000 93207000 42828000 50379000 19195000 8839800 10355000 6224100 2850200 3373800 4171000 1900700 2270200 0 0 0 120540 79956 40585 26718 2136 28141 142098;142099;142100;142101;142102;142103;142104;142105;142106;142107;142108 143046;143047;143048;143049;143050;143051 143048 6 NVSINTVTYEWAPPVQNQALAR KRNVMILTNPVAAKKNVSINTVTYEWAPPV TYEWAPPVQNQALARQYMQMLPKEKQPVAG K N V A R Q 3 1 3 0 0 2 1 0 0 1 1 0 0 0 2 1 2 1 1 3 0 0 22 0 2470.2605 Q9UGI8;F8W7T0 Q9UGI8 103 124 TES Testin yes no 3 0.013612 17.148 By MS/MS 2 0.73588 0.71955 27.634 2 Median 0.73588 0.71955 27.634 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4985200 2951700 2033500 4985200 2951700 2033500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26719 4263 28142 142109;142110 143052;143053 143052 2 NVSLGNVLAVAYATQR NIPNYDDLRQTEGFKNVSLGNVLAVAYATQ VSLGNVLAVAYATQREKLTFLEEDDKDLYI K N V Q R E 3 1 2 0 0 1 0 1 0 0 2 0 0 0 0 1 1 0 1 3 0 0 16 0 1674.9053 G3V1D3;G3V180;Q9NY33 G3V1D3 425 440 DPP3 Dipeptidyl peptidase 3 yes no 2;3 2.2812E-10 159.52 By MS/MS By MS/MS 2 2 1.2549 1.1625 7.2193 4 Median 1.137 1.1024 5.5305 2 0 Median 1.3823 1.2198 4.8229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20703000 8691000 12012000 8863000 3848900 5014200 11840000 4842100 6997700 0 0 0 0 0 0 0 0 0 0 0 0 26720 1102 28143 142111;142112;142113;142114 143054;143055;143056;143057;143058 143058 5 NVSQESLETKEEKPEETPK NENFKTVGPCLGDSKNVSQESLETKEEKPE ESLETKEEKPEETPKMELSLENVTVEGNAC K N V P K M 0 0 1 0 0 1 6 0 0 0 1 3 0 0 2 2 2 0 0 1 0 0 19 2 2201.0699 Q5UIP0;H7C2B5 Q5UIP0 1871 1889 RIF1 Telomere-associated protein RIF1 yes no 3;4 0.017137 19.292 By MS/MS By MS/MS 3 4 0.61111 0.66911 13.944 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53359 0.6182 17.06 2 0 Median 0.64014 0.70385 12.217 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11562000 6618500 4943300 0 0 0 0 0 0 9051800 5254900 3796900 2510000 1363600 1146300 0 0 0 0 0 0 26721 3109 28144 142115;142116;142117;142118;142119;142120;142121 143059;143060;143061;143062 143059 4 NVSQHLEDLER EEIKNVLEKVSSEWKNVSQHLEDLERKIQL SEWKNVSQHLEDLERKIQLQEDINAYFKQL K N V E R K 0 1 1 1 0 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1338.6528 P46939 P46939 782 792 UTRN Utrophin yes yes 3 0.0019474 42.843 By MS/MS By matching By matching 1 1 1 1.0467 0.92583 14.069 3 Median 0.92891 0.92583 NaN 1 0 Median 1.0967 0.90799 NaN 1 0 Median 1.0467 1.1692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15181000 7166300 8015100 6169700 3232400 2937300 7174400 3135800 4038700 1837300 798070 1039200 0 0 0 0 0 0 0 0 0 26722 2349 28145 142122;142123;142124 143063 143063 1 NVSSFPDDATSPLQENR ELRKAKKDDQMLKRRNVSSFPDDATSPLQE SSFPDDATSPLQENRNNQGTVNWSVDDIVK R N V N R N 1 1 2 2 0 1 1 0 0 0 1 0 0 1 2 3 1 0 0 1 0 0 17 0 1875.8599 P52292;J3QLL0;J3KS65 P52292 52 68 KPNA2 Importin subunit alpha-1 yes no 2 1.6387E-14 162.22 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 0.94793 0.76671 22.526 7 Median 1.1376 1.0904 NaN 1 0 Median 0.90485 0.76002 1.2392 2 0 Median 0.95551 0.94573 NaN 1 0 Median 0.83847 0.71864 NaN 1 0 Median 1.1417 1.1452 NaN 1 0 Median 0.73664 0.6308 NaN 1 0 Median 50859000 23385000 27474000 7886400 3848000 4038400 1363800 713790 650040 30628000 13595000 17034000 4821500 2480100 2341400 5000900 2083600 2917300 1157800 665110 492640 26723 2448 28146 142125;142126;142127;142128;142129;142130;142131 143064;143065;143066;143067;143068;143069;143070;143071;143072;143073;143074;143075;143076;143077;143078;143079 143069 16 NVSTGDVNVEMNAAPGVDLTQLLNNMR AYLKKNHEEEMKDLRNVSTGDVNVEMNAAP AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE R N V M R S 2 1 5 2 0 1 1 2 0 0 3 0 2 0 1 1 2 0 0 4 0 0 27 0 2871.3855 P13645;CON__P13645 P13645 296 322 KRT10 Keratin, type I cytoskeletal 10 yes no 3 2.062E-07 47.807 By MS/MS By MS/MS 2 1 0.075034 0.079291 40.089 3 Median NaN NaN NaN 0 0 Median 0.078455 0.070111 55.798 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.075034 0.079291 NaN 1 1 Median NaN NaN NaN 0 0 Median 4770900 4614600 156320 0 0 0 1400900 1352600 48298 0 0 0 0 0 0 3370000 3262000 108020 0 0 0 + 26724 756 28147;28148 142132;142133;142134 143080;143081;143082 143080 281 3 NVTAIQGPGGK KIFDAAKAPIQWEERNVTAIQGPGGKWMIP WEERNVTAIQGPGGKWMIPSEAKESMDKNK R N V G K W 1 0 1 0 0 1 0 3 0 1 0 1 0 0 1 0 1 0 0 1 0 0 11 0 1040.5615 P50213;H0YL72;H0YLI6;H0YMU3;H0YKD0;H0YM64 P50213 67 77 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.00045118 69.423 By MS/MS 2 1.1587 0.98057 2.4219 2 Median NaN NaN NaN 0 0 Median 1.1587 0.98057 2.4219 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4806000 2147500 2658500 0 0 0 4806000 2147500 2658500 0 0 0 0 0 0 0 0 0 0 0 0 26725 2409 28149 142135;142136 143083;143084;143085;143086 143084 4 NVTDEQEGFAEGFVR HITTTPTPTQFLCPKNVTDEQEGFAEGFVR NVTDEQEGFAEGFVRALAELHSQNTLPSVT K N V V R A 1 1 1 1 0 1 3 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 15 0 1696.7693 P05412 P05412 102 116 JUN Transcription factor AP-1 yes yes 2 4.0278E-09 140.24 By MS/MS By MS/MS By matching 1 2 1 1.0699 1.1233 15.973 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96076 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1686 1.2301 3.0573 2 2 Median 1.0005 0.88199 NaN 1 0 Median 21639000 10664000 10975000 0 0 0 0 0 0 13207000 6549700 6656900 0 0 0 8314800 4051500 4263400 117750 63140 54607 26726 1866 28150 142137;142138;142139;142140 143087;143088;143089;143090 143087 4 NVTDTDILALER GAVNCPYTYMSYFLRNVTDTDILALERRLL FLRNVTDTDILALERRLLQTMDMIISKKKR R N V E R R 1 1 1 2 0 0 1 0 0 1 2 0 0 0 0 0 2 0 0 1 0 0 12 0 1358.7042 A0A087WW82;U3KPV2;E9PKY3;P0CG08;B7ZAQ6;A0A087WW78 A0A087WW82 48 59 GPR89B;GPR89A Golgi pH regulator B;Golgi pH regulator A yes no 2 0.00040467 95.573 By MS/MS By MS/MS 1 2 1.473 1.4423 48.542 3 Plateau 1.473 1.4423 NaN 1 1 Median 1.0042 0.84757 53.184 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18566000 7306900 11259000 11925000 4083100 7842000 6640600 3223700 3416900 0 0 0 0 0 0 0 0 0 0 0 0 26727 56 28151 142141;142142;142143 143091;143092;143093;143094 143091 4 NVTELNEPLSNEER AEQAERYDDMAAAMKNVTELNEPLSNEERN KNVTELNEPLSNEERNLLSVAYKNVVGARR K N V E R N 0 1 3 0 0 0 4 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1642.7798 P61981 P61981 29 42 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 1.6963E-55 237.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.89132 0.78286 6.844 6 Median 0.81784 0.77148 11.092 2 0 Median 0.95854 0.81128 NaN 1 0 Median 0.87366 0.83858 NaN 1 0 Median 0.90735 0.75544 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91599 0.738 NaN 1 0 Median 356160000 183580000 172580000 194790000 100770000 94019000 74600000 37095000 37505000 69148000 37087000 32060000 13523000 6594400 6928400 0 0 0 4103800 2038800 2065000 26728 2566 28152 142144;142145;142146;142147;142148;142149 143095;143096;143097;143098;143099;143100;143101;143102;143103;143104;143105;143106;143107;143108 143100 14 NVTEMAMNPHIK SGSEGRAIIFCETKKNVTEMAMNPHIKQNA TKKNVTEMAMNPHIKQNAQCLHGDIAQSQR K N V I K Q 1 0 2 0 0 0 1 0 1 1 0 1 2 0 1 0 1 0 0 1 0 0 12 0 1383.6639 Q9BQ39;A0A087WVC1 Q9BQ39 401 412 DDX50 ATP-dependent RNA helicase DDX50 yes no 2;3 0.00067049 62.303 By MS/MS 2 0.83152 0.88422 25.053 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83152 0.88422 25.053 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7435500 3902200 3533300 0 0 0 0 0 0 7435500 3902200 3533300 0 0 0 0 0 0 0 0 0 26729 3781 28153 142150;142151 143109;143110;143111 143111 3 NVTGHYISPFHDIPLK ERGQPCSQNYRLFFKNVTGHYISPFHDIPL VTGHYISPFHDIPLKVNSKEENGIPMKKAR K N V L K V 0 0 1 1 0 0 0 1 2 2 1 1 0 1 2 1 1 0 1 1 0 0 16 0 1836.9523 Q9H2U2;D6R967;H0Y9D8;D6RGV9;D6RAD3 Q9H2U2 54 69 PPA2 Inorganic pyrophosphatase 2, mitochondrial no no 3;4 0.0006286 37.177 By MS/MS By matching 2 1 0.93983 0.8785 17.616 3 Median 0.83156 0.76548 19.477 2 0 Median 1.1026 0.92588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56959000 30504000 26456000 50753000 27779000 22974000 6206400 2724700 3481600 0 0 0 0 0 0 0 0 0 0 0 0 26730 3947 28154 142152;142153;142154 143112;143113;143114 143114 3 NVTHIDQALQEAHR DDDKFDIYTIAFGIRNVTHIDQALQEAHRV RNVTHIDQALQEAHRVLKPGGRFLCLEFSQ R N V H R V 2 1 1 1 0 2 1 0 2 1 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1630.8176 F8VVX6;Q5HYK3;B4DP72 F8VVX6 140 153 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial yes no 3;4 7.2054E-06 85.909 By MS/MS By MS/MS 2 2 1.1772 1.0508 19.941 4 Median 0.95467 0.9031 22.354 2 0 Median 1.3574 1.1393 12.378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21290000 10331000 10959000 12062000 5799200 6262500 9228700 4531900 4696800 0 0 0 0 0 0 0 0 0 0 0 0 26731 1068 28155 142155;142156;142157;142158 143115;143116 143115 1 NVTKDHIMEIFSTYGK PSPKPTKVHIGRLTRNVTKDHIMEIFSTYG VTKDHIMEIFSTYGKIKMIDMPVERMHPHL R N V G K I 0 0 1 1 0 0 1 1 1 2 0 2 1 1 0 1 2 0 1 1 0 0 16 1 1881.9295 H3BV80;H3BMM9;H3BTC0;Q15287;H3BMS0 H3BV80 77 92 RNPS1 RNA-binding protein with serine-rich domain 1 yes no 3 0.00023795 42.813 By matching By MS/MS By matching 1 3 1 1.0597 1.1317 19.683 5 Median 0.83579 0.78232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1194 1.1766 5.6473 3 0 Median 1.0403 0.92718 NaN 1 0 Median 39757000 19523000 20234000 1053200 557250 495980 0 0 0 0 0 0 0 0 0 38325000 18782000 19543000 378470 183530 194940 26732 1212 28156 142159;142160;142161;142162;142163 143117;143118;143119;143120 143117 4 NVTLCGHLHHGK MDFLADLMDNSELIRNVTLCGHLHHGKTCF LIRNVTLCGHLHHGKTCFVDCLIEQTHPEI R N V G K T 0 0 1 0 1 0 0 2 3 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1371.683 Q15029;K7EIT3 Q15029 131 142 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 3 0.00028134 57.836 By MS/MS By matching 1 1 1.0307 1.0345 8.6132 2 Median NaN NaN NaN 0 0 Median 1.1369 0.97338 NaN 1 0 Median 0.93443 1.0995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4844600 1916000 2928600 0 0 0 4697900 1846000 2851800 146750 69986 76764 0 0 0 0 0 0 0 0 0 26733 2917 28157 142164;142165 143121;143122 143122 2 NVTLGVPR QMTLNTFHYAGVSAKNVTLGVPRLKELINI YAGVSAKNVTLGVPRLKELINISKKPKTPS K N V P R L 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 854.4974 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1116 1123 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0075003 66.799 By MS/MS By MS/MS By MS/MS 1 1 1 0.83407 0.92313 20.691 3 Median NaN NaN NaN 0 0 Median 1.2053 1.0151 NaN 1 0 Median 0.83407 0.92313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65656 0.68297 NaN 1 0 Median NaN NaN NaN 0 0 Median 12045000 6651800 5393400 0 0 0 2057000 1096800 960270 3765300 2125200 1640100 0 0 0 6222900 3429900 2793100 0 0 0 26734 486 28158 142166;142167;142168 143123;143124;143125 143123 3 NVTLNPDPNEIK IWGEHEIDYILLVRKNVTLNPDPNEIKSYC VRKNVTLNPDPNEIKSYCYVSKEELKELLK K N V I K S 0 0 3 1 0 0 1 0 0 1 1 1 0 0 2 0 1 0 0 1 0 0 12 0 1352.6936 Q13907 Q13907 158 169 IDI1 Isopentenyl-diphosphate Delta-isomerase 1 yes yes 2 9.5692E-05 91.855 By MS/MS By MS/MS 1 1 0.66449 0.58964 1.9655 2 Median 0.62367 0.5815 NaN 1 0 Median 0.70798 0.59789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12810000 8006400 4803700 9807600 5799000 4008600 3002600 2207400 795150 0 0 0 0 0 0 0 0 0 0 0 0 26735 2846 28159 142169;142170 143126;143127 143126 2 NVTLPAVFK PLISVYSEKGESSGKNVTLPAVFKAPIRPD GESSGKNVTLPAVFKAPIRPDIVNFVHTNL K N V F K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 9 0 987.57532 P36578;H3BTP7;H3BU31 P36578 21 29 RPL4 60S ribosomal protein L4 yes no 2 0.0035603 64.265 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 1 5 1 3 1.1329 0.97498 9.7031 15 Median 1.0341 0.93731 3.7743 2 0 Median 1.0211 0.86657 18.654 3 0 Median 0.96553 0.92898 NaN 1 0 Median 1.1623 1.0293 2.9437 5 0 Median 0.99158 0.94784 NaN 1 0 Median 1.2018 0.9886 10.706 3 0 Median 104090000 51116000 52979000 37383000 18687000 18696000 10161000 4846100 5315100 19309000 9670400 9638700 3377600 1526200 1851400 28061000 13761000 14300000 5803000 2625300 3177700 26736 2260 28160 142171;142172;142173;142174;142175;142176;142177;142178;142179;142180;142181;142182;142183;142184;142185 143128;143129;143130;143131;143132;143133;143134;143135;143136 143133 9 NVTSWFTSK VFIGTWNMGSVPPPKNVTSWFTSKGLGKTL SVPPPKNVTSWFTSKGLGKTLDEVTVTIPH K N V S K G 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 2 2 1 0 1 0 0 9 0 1068.524 O15357;A0A0A0MTP6 O15357 441 449 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.023564 38.086 By MS/MS By matching 1 4 1.3717 1.2177 24.157 5 Median 0.90248 0.85279 NaN 1 0 Median 1.4275 1.279 22.094 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6717200 3048700 3668600 2194800 1055600 1139200 4522400 1993000 2529400 0 0 0 0 0 0 0 0 0 0 0 0 26737 1539 28161 142186;142187;142188;142189;142190 143137 143137 1 NVTVQPDDPISFMQLTAK LEEEKLSQKKESEKRNVTVQPDDPISFMQL VQPDDPISFMQLTAKNEMNCKEDQFQLSLL R N V A K N 1 0 1 2 0 2 0 0 0 1 1 1 1 1 2 1 2 0 0 2 0 0 18 0 2003.0034 P53618 P53618 662 679 COPB1 Coatomer subunit beta yes yes 2 7.5307E-05 48.659 By MS/MS By matching By matching By matching 2 2 1 1 0.97639 0.86868 31.59 6 Median 1.1703 1.1568 14.734 2 1 Median 0.91946 0.82257 15.2 2 0 Median 0.47811 0.50991 NaN 1 0 Median 0.93909 0.82389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19837000 8416200 11420000 16295000 6740000 9555200 2148500 882410 1266100 1266200 728200 538010 126760 65600 61164 0 0 0 0 0 0 26738 2472 28162 142191;142192;142193;142194;142195;142196 143138;143139;143140 143138 3 NVVACESIGR STREWAIKKHLYSTRNVVACESIGRVLAQR LYSTRNVVACESIGRVLAQRCLEAGINFMV R N V G R V 1 1 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1103.5393 Q9H0U6 Q9H0U6 121 130 MRPL18 39S ribosomal protein L18, mitochondrial yes yes 2 0.0030923 57.96 By MS/MS 1 1.6401 1.3629 NaN 1 Median NaN NaN NaN 0 0 Median 1.6401 1.3629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473800 609240 864600 0 0 0 1473800 609240 864600 0 0 0 0 0 0 0 0 0 0 0 0 26739 3930 28163 142197 143141;143142 143142 2 NVVAECLGK ALLLKHCECAEEGTRNVVAECLGKLTLIDP AEEGTRNVVAECLGKLTLIDPETLLPRLKG R N V G K L 1 0 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 988.50117 Q86VP6;A0A0C4DGH5 Q86VP6 949 957 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.0054443 71.501 By MS/MS 1 1.2909 1.0939 NaN 1 Median NaN NaN NaN 0 0 Median 1.2909 1.0939 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8776700 3898900 4877700 0 0 0 8776700 3898900 4877700 0 0 0 0 0 0 0 0 0 0 0 0 26740 3288 28164 142198 143143 143143 1 NVVHELR APQVSHKPGGEPKIKNVVHELRITNQVIYL PGGEPKIKNVVHELRITNQVIYLNPPIEEC K N V L R I 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 865.477 Q14204 Q14204 957 963 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.031276 49.358 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.167 1.0149 13.657 7 Median 0.99922 0.97879 27.271 2 0 Median 1.1912 1.0162 3.37 2 0 Median 0.9735 1.0895 NaN 1 0 Median 1.169 1.0149 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99698 0.8452 NaN 1 0 Median 3654300 1693600 1960700 230340 113100 117240 2126400 954500 1171900 723630 354790 368840 431730 201700 230040 0 0 0 142200 69472 72725 26741 2865 28165 142199;142200;142201;142202;142203;142204;142205 143144;143145;143146;143147;143148;143149;143150;143151;143152;143153 143148 10 NVVHQLSVTLEDLYNGATR FFGGGGRMQRERRGKNVVHQLSVTLEDLYN QLSVTLEDLYNGATRKLALQKNVICDKCEG K N V T R K 1 1 2 1 0 1 1 1 1 0 3 0 0 0 0 1 2 0 1 3 0 0 19 0 2128.0913 P31689 P31689 106 124 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2;3 0.00056306 34.685 By MS/MS By MS/MS 2 2 1.1377 1.0652 24.16 4 Median NaN NaN NaN 0 0 Median 0.99166 0.85595 4.4094 2 0 Median 1.2907 1.2974 1.3556 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12588000 5668200 6919900 0 0 0 4221200 2054200 2167000 8366900 3614000 4752800 0 0 0 0 0 0 0 0 0 26742 2204 28166 142206;142207;142208;142209 143154;143155;143156;143157 143155 4 NVVLPTETEVAPAK KDVRWPTETDVSSAKNVVLPTETEVAPAKD KNVVLPTETEVAPAKDVTLLKETERASPIK K N V A K D 2 0 1 0 0 0 2 0 0 0 1 1 0 0 2 0 2 0 0 3 0 0 14 0 1466.7981 E7EVA0;P27816 E7EVA0 350 363 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 1.0504E-08 108.9 By MS/MS By MS/MS By matching By MS/MS 1 1 1 3 0.71374 0.64135 34.165 6 Median 0.66135 0.63719 NaN 1 0 Median 0.65738 0.58156 NaN 1 0 Median 1.3553 1.4464 NaN 1 0 Median 0.7889 0.7033 11.55 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58124000 29725000 28399000 6805500 4677300 2128200 2191200 1223300 967940 15111000 5589400 9521400 34016000 18235000 15781000 0 0 0 0 0 0 26743 895 28167 142210;142211;142212;142213;142214;142215 143158;143159;143160;143161;143162;143163;143164;143165;143166 143164 9 NVVLPTETEVAPAKDVTLLK KDVRWPTETDVSSAKNVVLPTETEVAPAKD TETEVAPAKDVTLLKETERASPIKMDLAPS K N V L K E 2 0 1 1 0 0 2 0 0 0 3 2 0 0 2 0 3 0 0 4 0 0 20 1 2136.2042 E7EVA0;P27816 E7EVA0 350 369 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 2.953E-07 52.509 By MS/MS By MS/MS By matching By MS/MS 6 4 1 2 0.74207 0.69851 39.112 13 Median 0.64636 0.65146 19.062 6 0 Median NaN NaN NaN 0 0 Median 1.2579 1.465 23.866 4 0 Median 0.74207 0.69135 NaN 1 0 Median 0.89878 0.98403 17.097 2 0 Median NaN NaN NaN 0 0 Median 117100000 58682000 58413000 54197000 31341000 22856000 0 0 0 56255000 23604000 32651000 631200 349550 281650 6011500 3387300 2624100 0 0 0 26744 895 28168 142216;142217;142218;142219;142220;142221;142222;142223;142224;142225;142226;142227;142228 143167;143168;143169;143170;143171;143172;143173;143174;143175 143173 8 NVVLQTLEGHLR VACEQFLGKNVQDIKNVVLQTLEGHLRSIL DIKNVVLQTLEGHLRSILGTLTVEQIYQDR K N V L R S 0 1 1 0 0 1 1 1 1 0 3 0 0 0 0 0 1 0 0 2 0 0 12 0 1377.7728 J3QLD9;E7EMK3;Q14254 J3QLD9 101 112 FLOT2 Flotillin-2 yes no 2;3 5.0111E-06 101.11 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.5176 1.3776 33.582 7 Median 0.81431 0.81147 12.553 2 0 Median 1.8512 1.5949 20.715 2 0 Median 1.4062 1.4014 11.039 2 0 Median NaN NaN NaN 0 0 Median 1.6819 1.6899 NaN 1 0 Median NaN NaN NaN 0 0 Median 24834000 10976000 13858000 6026500 3252800 2773700 4497000 1608500 2888400 13508000 5746600 7761600 104830 62072 42759 697600 306270 391330 0 0 0 26745 856 28169 142229;142230;142231;142232;142233;142234;142235;142236 143176;143177;143178;143179;143180;143181;143182;143183 143182 8 NVVMVNQGLTK YTEESLLPVMQHLAKNVVMVNQGLTKHMTV HLAKNVVMVNQGLTKHMTVKNKYATSKHAK K N V T K H 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 3 0 0 11 0 1201.6489 P14635;E9PC90 P14635 386 396 CCNB1 G2/mitotic-specific cyclin-B1 yes no 2 0.00016921 79.974 By MS/MS By MS/MS 2 3 1.2733 1.2265 23.444 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4039 1.3737 16.025 2 1 Median 1.4068 1.2519 21.002 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33335000 13679000 19656000 0 0 0 0 0 0 19178000 7954100 11224000 14158000 5724800 8432800 0 0 0 0 0 0 26746 2007 28170;28171 142237;142238;142239;142240;142241 143184;143185;143186;143187;143188;143189 143188 797 6 NVVTIFSAPNYCYR AHQLVMEGYNWCHDRNVVTIFSAPNYCYRC RNVVTIFSAPNYCYRCGNQAAIMELDDTLK R N V Y R C 1 1 2 0 1 0 0 0 0 1 0 0 0 1 1 1 1 0 2 2 0 0 14 0 1702.8137 P67775;P62714;H0YC23 P67775 255 268 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 0.00014654 81.865 By MS/MS By matching By MS/MS 2 2 1 1.0269 0.90174 6.7999 4 Median 0.92636 0.87299 NaN 1 1 Median 1.0621 0.89126 6.2337 2 0 Median 1.0323 0.99174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11384000 5641900 5742300 5579700 2849900 2729700 4256100 2027800 2228200 1548500 764100 784360 0 0 0 0 0 0 0 0 0 26747 2594 28172 142242;142243;142244;142245;142246 143190;143191;143192 143190 3 NVVTTLLNAGGEK KTTGKGTTIQGLPGKNVVTTLLNAGGEKTI GKNVVTTLLNAGGEKTIQTVPTGAKPAILT K N V E K T 1 0 2 0 0 0 1 2 0 0 2 1 0 0 0 0 2 0 0 2 0 0 13 0 1314.7143 E9PMC9;Q7Z589 E9PMC9 514 526 C11orf30;EMSY Protein EMSY yes no 2 8.3013E-07 101.95 By MS/MS By matching 1 1 0.77924 0.77027 17.796 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80558 0.87357 NaN 1 0 Median 0.75377 0.67919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4535500 2513300 2022200 0 0 0 0 0 0 4370600 2424400 1946200 164920 88881 76040 0 0 0 0 0 0 26748 966 28173 142247;142248 143193;143194 143194 2 NVVTVDELR GQGPVMENAQGLGFRNVVTVDELRMAFPLL QGLGFRNVVTVDELRMAFPLLDMVDLERRL R N V L R M 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 9 0 1043.5611 Q9BXW7 Q9BXW7 153 161 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS 1 1 1 1.1541 1.1736 9.591 3 Median 1.1873 1.1924 NaN 1 0 Median 1.1541 1.0024 NaN 1 0 Median 1.0739 1.1736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206160000 95317000 110840000 58329000 24608000 33720000 128970000 62206000 66764000 18862000 8502900 10359000 0 0 0 0 0 0 0 0 0 26749 3882 28174 142249;142250;142251 143195;143196;143197;143198;143199 143196 5 NVVVFDK CPSDTNKILTGGADKNVVVFDKSSEQILAT ILTGGADKNVVVFDKSSEQILATLKGHTKK K N V D K S 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 3 0 0 7 0 819.44905 Q9UMS4 Q9UMS4 245 251 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 0.021867 58.604 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1.2412 1.0812 11.518 5 Median 1.2202 1.1794 NaN 1 0 Median 1.2744 1.0812 NaN 1 0 Median 1.0352 1.0033 NaN 1 0 Median 1.4086 1.1982 16.816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43936000 19685000 24251000 2127800 677980 1449800 8469900 3564000 4905900 18736000 9023000 9713400 14602000 6419800 8182100 0 0 0 0 0 0 26750 4334 28175 142252;142253;142254;142255;142256 143200;143201;143202;143203 143201 4 NVVVVDGVR VQTKTKKTLAKPNIRNVVVVDGVRTPFLLS AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP R N V V R T 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 0 0 9 0 955.54508 P55084;F5GZQ3;B5MD38;C9JEY0;C9JE81;C9K0M0 P55084 53 61 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.00060479 110.12 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.4047 1.2568 11.73 4 Median 1.2517 1.1922 NaN 1 0 Median 1.5764 1.3248 NaN 1 0 Median 1.1672 1.1439 NaN 1 0 Median 1.7298 1.4867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81146000 35588000 45557000 13273000 6508400 6764600 16210000 6465000 9745100 19779000 10055000 9723900 31883000 12560000 19324000 0 0 0 0 0 0 26751 2496 28176 142257;142258;142259;142260 143204;143205;143206;143207 143207 4 NVYKFELDTSER KTGQEVVFVAEPDNKNVYKFELDTSERKIE DNKNVYKFELDTSERKIEFDSASGTYTLYL K N V E R K 0 1 1 1 0 0 2 0 0 0 1 1 0 1 0 1 1 0 1 1 0 0 12 1 1499.7256 P04844 P04844 457 468 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 3 0.0010197 66.023 By MS/MS 1 1.1834 1.2263 NaN 1 Median 1.1834 1.2263 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9173900 4204800 4969100 9173900 4204800 4969100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26752 1854 28177 142261 143208 143208 1 NVYPEEMIVALR VSKSVERIFKIWEDRNVYPEEMIVALREAL EDRNVYPEEMIVALREALSTTFKTQKQLKE R N V L R E 1 1 1 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 1 2 0 0 12 0 1432.7384 Q5VT52 Q5VT52 131 142 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.0031974 72.643 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26753 3110 28178 142262 143209 143209 1 NWADVQSQLR HSSTQRRIRVTTIARNWADVQSQLRHIEAA TTIARNWADVQSQLRHIEAAFDQEAAAVLM R N W L R H 1 1 1 1 0 2 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1215.5996 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 486 495 SEC23B Protein transport protein Sec23B yes no 2 0.042746 30.254 By matching By matching By MS/MS 1 1 1 0.71527 0.73009 22.613 3 Median 0.66464 0.68212 NaN 1 0 Median 1.187 1.0394 NaN 1 0 Median 0.71527 0.73009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18244000 9876300 8367700 7359700 4082200 3277500 1648800 705510 943290 9235500 5088600 4146900 0 0 0 0 0 0 0 0 0 26754 401 28179 142263;142264;142265 143210 143210 1 NWDEWVPESR DKQVKYFIHYSGWNKNWDEWVPESRVLKYV SGWNKNWDEWVPESRVLKYVDTNLQKQREL K N W S R V 0 1 1 1 0 0 2 0 0 0 0 0 0 0 1 1 0 2 0 1 0 0 10 0 1316.5786 B3KTM8;H0YLJ3;H0YMJ0 B3KTM8 77 86 MORF4L1 yes no 2 0.0005177 115.71 By MS/MS By MS/MS 2 1 0.91456 0.81344 12.613 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8702 0.90083 15.771 2 0 Median 0.91456 0.81344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11706000 5916300 5790000 0 0 0 0 0 0 10366000 5263100 5102600 1340600 653150 687440 0 0 0 0 0 0 26755 585 28180 142266;142267;142268 143211;143212;143213;143214 143211 4 NWFGLPGR GGSYGGAGQPQLISRNWFGLPGRLDAAMAG QPQLISRNWFGLPGRLDAAMAGHIYVSGSA R N W G R L 0 1 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 1 0 0 0 0 8 0 945.48209 CON__Q3ZBS7 CON__Q3ZBS7 342 349 yes yes 2 0.019911 67.035 By MS/MS By MS/MS 1 3 0.047159 0.049893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.047159 0.049893 NaN 1 1 Median NaN NaN NaN 0 0 Median 15604000 15535000 68397 0 0 0 0 0 0 3328900 3328900 0 0 0 0 12275000 12207000 68397 0 0 0 + 26756 783 28181 142269;142270;142271;142272 143215;143216;143217;143218 143217 4 NWIWTSYIINQAK GAAGLDSSFYGHLKRNWIWTSYIINQAKKE KRNWIWTSYIINQAKKENTAAENGLTVRLQ R N W A K K 1 0 2 0 0 1 0 0 0 3 0 1 0 0 0 1 1 2 1 0 0 0 13 0 1635.8409 Q12789;H3BU55 Q12789 1130 1142 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.027199 27.115 By MS/MS By matching 1 1 0.89409 0.89853 16.558 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90627 1.0101 NaN 1 0 Median 0.88208 0.79925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3198500 1611200 1587300 0 0 0 0 0 0 3117900 1564300 1553700 80608 46972 33636 0 0 0 0 0 0 26757 2758 28182 142273;142274 143219;143220 143219 2 NWKPARPVGIEK PASGCEAETQTEELKNWKPARPVGIEKSLQ ELKNWKPARPVGIEKSLQLSTEGFITLTYK K N W E K S 1 1 1 0 0 0 1 1 0 1 0 2 0 0 2 0 0 1 0 1 0 0 12 2 1393.783 P11717 P11717 998 1009 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3 0.00020818 63.611 By MS/MS By MS/MS 2 2 0.93533 1.0306 17.698 4 Median 0.86754 0.93048 28.018 2 0 Median 0.93533 1.0306 7.0946 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35196000 17353000 17843000 6415300 3200100 3215200 28781000 14153000 14628000 0 0 0 0 0 0 0 0 0 0 0 0 26758 1969 28183 142275;142276;142277;142278 143221;143222;143223;143224;143225 143223 5 NWNEVVTQQYLFDR LKECEDTHLGEEVDRNWNEVVTQQYLFDRL RNWNEVVTQQYLFDRLAHEIEALKSFSKSD R N W D R L 0 1 2 1 0 2 1 0 0 0 1 0 0 1 0 0 1 1 1 2 0 0 14 0 1810.8638 O43847;G3V1R5;H0Y5G9 O43847 1039 1052 NRD1 Nardilysin yes no 2 0.00037473 72.006 By MS/MS By matching 1 1 1.2557 1.1524 5.8348 2 Median 1.2292 1.2009 NaN 1 0 Median 1.2827 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4410200 2079200 2331100 2813800 1296400 1517400 1596500 782770 813690 0 0 0 0 0 0 0 0 0 0 0 0 26759 1597 28184 142279;142280 143226;143227 143227 2 NWNSPVANFIMESQR HFNQEILPVFLNANRNWNSPVANFIMESQR NWNSPVANFIMESQRLELIRLMETQEEDVV R N W Q R L 1 1 3 0 0 1 1 0 0 1 0 0 1 1 1 2 0 1 0 1 0 0 15 0 1791.8363 Q6PI48;A0A3B3ISK7;A0A3B3ITS3;A0A3B3ITK9 Q6PI48 409 423 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0014826 39.148 By MS/MS By MS/MS 1 1 0.80031 0.82551 12.757 2 Median 0.74568 0.7543 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85894 0.90343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6335300 3385200 2950100 1972400 1107500 864890 0 0 0 4362900 2277700 2085200 0 0 0 0 0 0 0 0 0 26760 3171 28185 142281;142282 143228;143229;143230;143231;143232;143233 143229 6 NWQYQETIK DKVNEIVETNRPDSKNWQYQETIKKGDLLL NRPDSKNWQYQETIKKGDLLLNRVQKLSRV K N W I K K 0 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 9 0 1208.5826 Q15008 Q15008 363 371 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2 0.00082669 95.741 By MS/MS By matching 2 1 0.96876 0.96414 22.777 3 Median 1.0446 1.0009 5.2964 2 0 Median NaN NaN NaN 0 0 Median 0.65048 0.67827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35239000 17357000 17882000 27621000 12925000 14696000 0 0 0 7618600 4432800 3185800 0 0 0 0 0 0 0 0 0 26761 2911 28186 142283;142284;142285 143234 143234 1 NWQYQETIKK DKVNEIVETNRPDSKNWQYQETIKKGDLLL RPDSKNWQYQETIKKGDLLLNRVQKLSRVI K N W K K G 0 0 1 0 0 2 1 0 0 1 0 2 0 0 0 0 1 1 1 0 0 0 10 1 1336.6776 Q15008 Q15008 363 372 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2;3 0.0073711 50.703 By MS/MS 2 0.89423 0.83664 5.615 2 Median 0.89423 0.83664 5.615 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5798700 3347800 2450900 5798700 3347800 2450900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26762 2911 28187 142286;142287 143235;143236;143237 143235 3 NWRPQLLVLLK RYALLRLEEGPPHTKNWRPQLLVLLKLDED PHTKNWRPQLLVLLKLDEDLHVKYPRLLTF K N W L K L 0 1 1 0 0 1 0 0 0 0 4 1 0 0 1 0 0 1 0 1 0 0 11 1 1378.8449 I3L4N6;Q9UP95;B3KXX3;Q9UHW9;H0YMQ9;H0YKQ8 I3L4N6 641 651 SLC12A4;SLC12A6 Solute carrier family 12 member 4;Solute carrier family 12 member 6 yes no 2 0.017329 49.418 By MS/MS 2 1.2575 1.1965 1.3727 2 Median NaN NaN NaN 0 0 Median 1.2575 1.1965 1.3727 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8806100 3816200 4989900 0 0 0 8806100 3816200 4989900 0 0 0 0 0 0 0 0 0 0 0 0 26763 1293 28188 142288;142289 143238 143238 1 NWTIHTWIR YLYKFRHSPNCWYLRNWTIHTWIRQCLKYD NCWYLRNWTIHTWIRQCLKYDAQDKALYTL R N W I R Q 0 1 1 0 0 0 0 0 1 2 0 0 0 0 0 0 2 2 0 0 0 0 9 0 1225.6356 G5EA06;Q92552;D6RH20;D6RJC7 G5EA06 50 58 MRPS27 28S ribosomal protein S27, mitochondrial yes no 3 0.039571 20.304 By MS/MS By matching 1 1 1.3962 1.3158 14.378 2 Median 1.1709 1.1886 NaN 1 0 Median 1.665 1.4566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2197800 1045400 1152400 1511500 738600 772920 686270 306810 379460 0 0 0 0 0 0 0 0 0 0 0 0 26764 1131 28189 142290;142291 143239;143240 143239 2 NWVVVGGLNTHYR DAGKQGKVVQVIRQRNWVVVGGLNTHYRYI QRNWVVVGGLNTHYRYIGKTMDYRGTMIPS R N W Y R Y 0 1 2 0 0 0 0 2 1 0 1 0 0 0 0 0 1 1 1 3 0 0 13 0 1513.779 Q96A35;X6RJ73;X6RHI2 Q96A35 84 96 MRPL24 39S ribosomal protein L24, mitochondrial yes no 2;3 2.9783E-23 204.5 By MS/MS By matching By matching By matching By matching 3 2 2 1 1 1.137 1.0689 16.757 8 Median 1.0547 1.0008 4.0564 2 0 Median 1.4214 1.2091 12.17 2 0 Median 0.90791 0.85564 6.3653 2 0 Median NaN NaN NaN 0 0 Median 1.1924 1.1646 NaN 1 0 Median 1.5737 1.2754 NaN 1 0 Median 40743000 19454000 21290000 32163000 15386000 16776000 2549400 1154900 1394400 4135900 2204000 1931900 0 0 0 1273700 480010 793710 621300 228210 393090 26765 3593 28190 142292;142293;142294;142295;142296;142297;142298;142299;142300 143241;143242;143243;143244 143242 4 NWYLPAPEVSPR CGFPWYLPVHFLIRKNWYLPAPEVSPRNPP IRKNWYLPAPEVSPRNPPHFRLISKEQTPW K N W P R N 1 1 1 0 0 0 1 0 0 0 1 0 0 0 3 1 0 1 1 1 0 0 12 0 1427.7197 Q7Z2K6;E7ER77 Q7Z2K6 759 770 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2 0.002872 73.067 By MS/MS 1 0.78698 0.78955 NaN 1 Median 0.78698 0.78955 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4650700 2963600 1687100 4650700 2963600 1687100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26766 883 28191 142301 143245 143245 1 NYAAALETFTEGQK STAMLRKGICEYHEKNYAAALETFTEGQKL KNYAAALETFTEGQKLDIETGFHRVGQAGL K N Y Q K L 3 0 1 0 0 1 2 1 0 0 1 1 0 1 0 0 2 0 1 0 0 0 14 0 1541.7362 Q9Y2Z0 Q9Y2Z0 94 107 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 7.3646E-05 89.548 By MS/MS 1 1.1485 1.0723 NaN 1 Median 1.1485 1.0723 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5226700 2641600 2585100 5226700 2641600 2585100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26767 4398 28192 142302 143246 143246 1 NYADHVR SRFWEWGKNIVCVGRNYADHVREMRSAVLS KNIVCVGRNYADHVREMRSAVLSEPVLFLK R N Y V R E 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 7 0 873.40931 Q6P587 Q6P587 26 32 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2 0.066709 36.185 By MS/MS By matching 1 1 1.2619 1.1063 11.783 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0868 1.0179 NaN 1 0 Median 1.4652 1.2025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1818600 888450 930160 0 0 0 0 0 0 1414900 705620 709280 403700 182820 220880 0 0 0 0 0 0 26768 3160 28193 142303;142304 143247 143247 1 NYAFEIPDVPEKSEYLEVK TKYKIMKFKSKPVEKNYAFEIPDVPEKSEY EIPDVPEKSEYLEVKYSAEMPQLPQDLKGE K N Y V K Y 1 0 1 1 0 0 4 0 0 1 1 2 0 1 2 1 0 0 2 2 0 0 19 1 2269.1154 A0A087WU64;A6NMQ1;P09884 A0A087WU64 438 456 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.00069253 31.111 By MS/MS By MS/MS 2 2 0.74657 0.79692 33.336 4 Median 1.0244 1.0322 50.515 2 0 Median NaN NaN NaN 0 0 Median 0.69504 0.79692 10.634 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15579000 8547600 7031400 11446000 6241500 5204600 0 0 0 4132900 2306000 1826900 0 0 0 0 0 0 0 0 0 26769 26 28194 142305;142306;142307;142308 143248;143249 143248 2 NYAHALDGLYR VRMQNDVKLPQGQRRNYAHALDGLYRVARE GQRRNYAHALDGLYRVAREEGLRRLFSGAT R N Y Y R V 2 1 1 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 2 0 0 0 11 0 1291.6309 B4DLN1 B4DLN1 295 305 no no 2;3 0.00011904 81.525 By MS/MS By MS/MS 5 3 1.2007 1.1555 67.152 8 Median 1.1964 1.1443 15.06 5 1 Median 1.6023 1.3586 118.01 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81145000 40846000 40299000 68714000 33214000 35500000 12431000 7632100 4799000 0 0 0 0 0 0 0 0 0 0 0 0 26770 598 28195 142309;142310;142311;142312;142313;142314;142315;142316 143250;143251;143252;143253;143254;143255;143256 143250 7 NYAQVFNK NHCVFSANEDHETIRNYAQVFNKLIRRYKY EDHETIRNYAQVFNKLIRRYKYLEKAFEDE R N Y N K L 1 0 2 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 8 0 982.48723 E7ETZ4;Q9Y6E2;B5MCH7;Q75MG1;E7EMS9;E9PFE3;C9JF98;F8WDX8 E7ETZ4 110 117 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.011113 57.559 By MS/MS 1 1.0244 0.87605 NaN 1 Median NaN NaN NaN 0 0 Median 1.0244 0.87605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5687000 2637100 3049900 0 0 0 5687000 2637100 3049900 0 0 0 0 0 0 0 0 0 0 0 0 26771 892 28196 142317 143257 143257 1 NYDIQYFSMR IGLRDVDPPEHFILKNYDIQYFSMRDIDRL HFILKNYDIQYFSMRDIDRLGIQKVMERTF K N Y M R D 0 1 1 1 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 0 10 0 1335.5918 P78540 P78540 211 220 ARG2 Arginase-2, mitochondrial yes yes 2 0.00038066 80.239 By MS/MS By matching 2 1 1.4254 1.4126 32.309 3 Plateau 1.4254 1.4126 32.745 2 0 Median 1.111 0.95612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3220600 1370800 1849800 2765700 1172500 1593200 454910 198310 256600 0 0 0 0 0 0 0 0 0 0 0 0 26772 2648 28197 142318;142319;142320 143258 143258 1 NYDPALHPFEVPR NYVRETKLDLQRVPRNYDPALHPFEVPREY PRNYDPALHPFEVPREYIRALNATKLERVF R N Y P R E 1 1 1 1 0 0 1 0 1 0 1 0 0 1 3 0 0 0 1 1 0 0 13 0 1553.7627 A0A087WT20;Q9NV06;B3KME9;E5RHM4 A0A087WT20 179 191 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 0.00060285 48.625 By matching By MS/MS By matching 1 3 1 0.77949 0.81009 25.891 5 Median NaN NaN NaN 0 0 Median 1.3026 1.308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77949 0.81009 7.8585 3 0 Median 0.75967 0.66969 NaN 1 0 Median 10918000 5858000 5059600 0 0 0 694160 240670 453490 0 0 0 0 0 0 10034000 5508600 4525300 189580 108730 80847 26773 13 28198 142321;142322;142323;142324;142325 143259 143259 1 NYEDEDSLK EINNIIKIVGLQYKKNYEDEDSLKTLRYGK GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K N Y L K T 0 0 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1111.4669 P11388 P11388 521 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0025948 70.919 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1288 1.172 16.453 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1897 1.3217 NaN 1 0 Median 1.3976 1.2651 NaN 1 0 Median 1.0374 1.0858 NaN 1 0 Median 1.0711 0.91961 NaN 1 0 Median 19418000 9221100 10197000 0 0 0 0 0 0 6961600 3310700 3650900 2081500 838330 1243200 9511100 4689000 4822100 863460 383010 480450 26774 1963 28199 142326;142327;142328;142329 143260;143261;143262;143263;143264 143261 5 NYEDEDSLKTLR EINNIIKIVGLQYKKNYEDEDSLKTLRYGK YKKNYEDEDSLKTLRYGKIMIMTDQDQDGS K N Y L R Y 0 1 1 2 0 0 2 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 12 1 1481.6998 P11388 P11388 521 532 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.00070887 72.958 By MS/MS 1 1.2762 1.4434 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2762 1.4434 NaN 1 1 Median NaN NaN NaN 0 0 Median 4611700 1933200 2678500 0 0 0 0 0 0 0 0 0 0 0 0 4611700 1933200 2678500 0 0 0 26775 1963 28200 142330 143265 143265 1 NYEEIAKVEK DQLVILDMKHGVEAKNYEEIAKVEKLKPLE GVEAKNYEEIAKVEKLKPLEVELRRLEDLS K N Y E K L 1 0 1 0 0 0 3 0 0 1 0 2 0 0 0 0 0 0 1 1 0 0 10 1 1221.6241 P49755 P49755 134 143 TMED10 Transmembrane emp24 domain-containing protein 10 yes yes 2 0.0019836 75.294 By MS/MS By matching By matching By matching 1 1 1 2 1.1521 1.0364 94.9 5 Median 3.2805 3.2604 NaN 1 0 Median 0.75063 0.66425 NaN 1 0 Median 5.1161 5.2039 NaN 1 0 Median 0.95854 0.8326 30.958 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127290000 56113000 71177000 36810000 8584200 28226000 82417000 45346000 37071000 5365900 786570 4579400 2697100 1396500 1300700 0 0 0 0 0 0 26776 2396 28201 142331;142332;142333;142334;142335 143266;143267 143267 2 NYEHLFK QILNVSKLSPEEVQKNYEHLFKVNDKSVGG LSPEEVQKNYEHLFKVNDKSVGGSFYLQSK K N Y F K V 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 949.46577 A0A0A6YYL4;I3L1U7;I3L0X9;I3L3T0;Q9Y3D7 A0A0A6YYL4 999 1005 CORO7-PAM16;PAM16 Coronin;Mitochondrial import inner membrane translocase subunit TIM16 yes no 2 0.016379 68.787 By MS/MS By MS/MS By matching 1 1 1 1.1098 1.0705 8.6399 3 Median 1.0284 0.93878 NaN 1 0 Median 1.3449 1.1049 NaN 1 0 Median 1.1098 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40304000 16798000 23506000 6856500 3396900 3459500 27911000 11096000 16816000 5536400 2305400 3230900 0 0 0 0 0 0 0 0 0 26777 209 28202 142336;142337;142338 143268;143269;143270 143269 3 NYEVRPEMLK SLGVIKVISGFVKGRNYEVRPEMLKTFLCL FVKGRNYEVRPEMLKTFLCLRIKEVEVKKD R N Y L K T 0 1 1 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 10 1 1277.6438 Q8WTT2 Q8WTT2 413 422 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.020622 74.533 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26778 3484 28203 142339 143271 143271 1 NYFHLWTR VVITGVQPEHIQYLKNYFHLWTRQLAHIYH EHIQYLKNYFHLWTRQLAHIYHYYIHGPKG K N Y T R Q 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 1 0 0 0 8 0 1135.5563 A6NHR9 A6NHR9 337 344 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0095557 60.59 By MS/MS By matching 1 1 1.0234 1.0008 15.115 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82295 0.89932 NaN 1 0 Median 1.2726 1.1136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10271000 5139300 5132100 0 0 0 0 0 0 9865500 4947700 4917800 405860 191590 214280 0 0 0 0 0 0 26779 518 28204 142340;142341 143272 143272 1 NYFLEEDNYK ANAVLQALSNVPPLRNYFLEEDNYKNIKRP VPPLRNYFLEEDNYKNIKRPPGDIMFLLVQ R N Y Y K N 0 0 2 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 2 0 0 0 10 0 1333.5826 B9A018;Q53GS9;A0A087X1B2 B9A018 251 260 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 0.00040525 122.52 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1 1.1706 1.051 20.528 8 Median 1.2494 1.1938 NaN 1 0 Median 0.92165 0.78981 33.67 2 0 Median 0.96625 0.96456 0.31164 2 0 Median 1.3032 1.1089 NaN 1 0 Median 1.1855 1.1361 NaN 1 0 Median 1.2934 1.1022 NaN 1 0 Median 34041000 15618000 18423000 5539400 2169200 3370200 1878400 920890 957520 20383000 9832700 10550000 3802200 1602200 2200000 1984400 857870 1126500 453760 235090 218670 26780 654 28205 142342;142343;142344;142345;142346;142347;142348;142349 143273;143274;143275;143276;143277;143278 143276 6 NYGFVHIEDK LFEQYGKVLECDIIKNYGFVHIEDKTAAED CDIIKNYGFVHIEDKTAAEDAIRNLHHYKL K N Y D K T 0 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 10 0 1220.5826 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 36 45 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2;3 0.00034654 101.46 By MS/MS By matching By MS/MS By matching 5 2 2 1 0.86366 0.78673 53.806 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1438 1.1799 29.053 5 0 Median 0.44375 0.40656 88.271 2 0 Median 0.77271 0.76861 8.3876 2 0 Median 0.79725 0.72443 NaN 1 0 Median 73601000 34914000 38687000 0 0 0 0 0 0 59177000 26244000 32933000 2574200 1895700 678480 11478000 6560300 4918000 371450 214310 157140 26781 3870;3780 28206 142350;142351;142352;142353;142354;142355;142356;142357;142358;142359 143279;143280;143281;143282;143283 143279 5 NYGILADATEQVGQHK ______________________________ YGILADATEQVGQHKDAYQVILDGVKGGTK R N Y H K D 2 0 1 1 0 2 1 2 1 1 1 1 0 0 0 0 1 0 1 1 0 0 16 0 1742.8588 G3V1C3;Q9BZZ5;E9PQK6 G3V1C3 10 25 API5 Apoptosis inhibitor 5 yes no 2;3 3.1915E-72 240.85 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 6 3 1 2 1.1227 1.0595 14.715 15 Median 1.0796 1.012 0.71118 2 0 Median 0.98254 0.86296 NaN 1 0 Median 1.1276 1.0788 13.529 6 0 Median 1.2689 1.0885 9.2587 3 0 Median 0.91681 0.87293 NaN 1 0 Median 1.304 1.1331 28.024 2 0 Median 360250000 164290000 195960000 27609000 13093000 14516000 820740 356500 464240 305070000 138630000 166440000 19649000 8389900 11259000 5048500 2773100 2275400 2054700 1050900 1003800 26782 1103 28207 142360;142361;142362;142363;142364;142365;142366;142367;142368;142369;142370;142371;142372;142373;142374 143284;143285;143286;143287;143288;143289;143290;143291;143292;143293;143294;143295;143296;143297;143298 143289 15 NYGSYSTQASAAAATAELLK PSLQPSRKLSPTEPKNYGSYSTQASAAAAT STQASAAAATAELLKKQEELNRKAEELDRR K N Y L K K 6 0 1 0 0 1 1 1 0 0 2 1 0 0 0 3 2 0 2 0 0 0 20 0 2015.98 O14828 O14828 82 101 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 2 7.6739E-19 148.72 By MS/MS By matching 3 2 1.236 1.1883 10.803 5 Median 1.1988 1.1883 11.396 3 0 Median 1.4124 1.234 9.6279 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28076000 12251000 15825000 26683000 11663000 15020000 1393200 587820 805430 0 0 0 0 0 0 0 0 0 0 0 0 26783 1498 28208 142375;142376;142377;142378;142379 143299;143300;143301;143302;143303;143304 143300 6 NYHIFYR LLEKSRICVQGKEERNYHIFYRLCAGASED CVQGKEERNYHIFYRLCAGASEDIREKLHL R N Y Y R L 0 1 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 0 7 0 1011.4926 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 244 250 MYO6 Unconventional myosin-VI yes no 2 0.011345 80.377 By MS/MS 1 0.98572 0.95469 NaN 1 Median 0.98572 0.95469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3692200 1913600 1778600 3692200 1913600 1778600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26784 164 28209 142380 143305 143305 1 NYHPIVVPGLGR RMKKSDNKMGITPLRNYHPIVVPGLGRSLG PLRNYHPIVVPGLGRSLGFLPKMPRLRVVH R N Y G R S 0 1 1 0 0 0 0 2 1 1 1 0 0 0 2 0 0 0 1 2 0 0 12 0 1320.7303 Q12789 Q12789 778 789 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2;3 0.00053008 76.064 By MS/MS 2 0.63802 0.69689 7.2775 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63802 0.69689 7.2775 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20858000 12390000 8467700 0 0 0 0 0 0 20858000 12390000 8467700 0 0 0 0 0 0 0 0 0 26785 2758 28210 142381;142382 143306;143307 143306 2 NYIAQNAIEAAER HVRVMHANNPKYVLRNYIAQNAIEAAERGD LRNYIAQNAIEAAERGDFSEVRRVLKLLET R N Y E R G 4 1 2 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 13 0 1461.7212 A0A087X0Q9;Q9BVL4 A0A087X0Q9 598 610 SELO Selenoprotein O yes no 2 0.00022946 91.855 By MS/MS 1 2.5052 2.372 NaN 1 Median 2.5052 2.372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16199000 3777500 12421000 16199000 3777500 12421000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26786 110 28211 142383 143308 143308 1 NYILDQTNVYGSAQR QCLNRLIQIAARKKRNYILDQTNVYGSAQR NYILDQTNVYGSAQRRKMRPFEGFQRKAIV R N Y Q R R 1 1 2 1 0 2 0 1 0 1 1 0 0 0 0 1 1 0 2 1 0 0 15 0 1740.8431 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1 Q9BUJ2 501 515 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2;3 1.5217E-90 222.74 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 6 2 0.91151 0.88265 32.17 17 Median 0.80975 0.79015 80.095 2 1 Median 1.2463 1.0915 22.138 3 0 Median 1.0816 1.1417 40.468 2 0 Median 1.4297 1.2251 9.3762 2 1 Median 0.72637 0.72573 10.791 6 2 Median 1.3323 1.1125 7.8243 2 0 Median 141840000 82418000 59423000 39273000 26267000 13006000 4607300 2101700 2505600 19705000 10070000 9634700 3200900 1221600 1979200 72024000 41422000 30601000 3031000 1335000 1696000 26787 3840 28212 142384;142385;142386;142387;142388;142389;142390;142391;142392;142393;142394;142395;142396;142397;142398;142399;142400 143309;143310;143311;143312;143313;143314;143315;143316;143317;143318;143319;143320;143321;143322;143323 143309 15 NYIQGINLVQAK EAKPVDKVKLIKEIKNYIQGINLVQAKKLV EIKNYIQGINLVQAKKLVESLPQEIKANVA K N Y A K K 1 0 2 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1359.751 B4DLN1 B4DLN1 151 162 no no 2 3.353E-06 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 2 1 1.1682 1.0965 44.263 11 Median 1.0039 0.929 18.302 2 1 Median 1.5096 1.2926 64.701 3 1 Plateau 1.1682 1.0965 NaN 1 0 Median 1.7318 1.4336 1.6623 2 0 Median 0.96736 1.0341 65.496 2 0 Median 1.8843 1.4947 NaN 1 0 Median 345620000 153110000 192510000 199750000 90930000 108820000 13105000 6242400 6862800 103040000 45278000 57759000 16169000 5840800 10328000 12182000 4385100 7797100 1379800 434100 945670 26788 598 28213 142401;142402;142403;142404;142405;142406;142407;142408;142409;142410;142411;142412 143324;143325;143326;143327;143328;143329;143330;143331;143332;143333;143334;143335;143336;143337 143324 14 NYIQSLTQMPK PGAELLKKISSESARNYIQSLTQMPKMNFA ESARNYIQSLTQMPKMNFANVFIGANPLAV R N Y P K M 0 0 1 0 0 2 0 0 0 1 1 1 1 0 1 1 1 0 1 0 0 0 11 0 1321.67 Q16539;B4E0K5 Q16539 257 267 MAPK14 Mitogen-activated protein kinase 14 yes no 2 0.00065076 65.347 By MS/MS 1 0.87118 0.81449 NaN 1 Median 0.87118 0.81449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3753500 1959500 1794100 3753500 1959500 1794100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26789 2987 28214 142413 143338;143339 143339 2 NYISAWELQR ALLNGEYLLAAQLGKNYISAWELQRKVSTG AQLGKNYISAWELQRKVSTGNLLVILSRHY K N Y Q R K 1 1 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 0 10 0 1278.6357 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0;K7EML4;A0A087X237;K7EKX5 U3KQC1 59 68 WDR18 WD repeat-containing protein 18 yes no 2 0.00038066 105.78 By matching By matching By MS/MS By matching By MS/MS 1 1 2 2 2 1.0416 1.0504 23.871 8 Median 1.0572 1.0708 NaN 1 0 Median 0.71801 0.6173 NaN 1 0 Median 0.96181 0.9944 0.98791 2 0 Median 1.5303 1.3101 2.6752 2 0 Median 1.0568 1.0993 9.1576 2 0 Median NaN NaN NaN 0 0 Median 31032000 14206000 16826000 1653700 840110 813570 1100700 577550 523190 20603000 9349500 11253000 1673400 629530 1043900 6001700 2809500 3192200 0 0 0 26790 147 28215 142414;142415;142416;142417;142418;142419;142420;142421 143340;143341;143342 143341 3 NYITMDELR ADQVMASFKILAGDKNYITMDELRRELPPD ILAGDKNYITMDELRRELPPDQAEYCIARM K N Y L R R 0 1 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 9 0 1153.5438 P12814;H9KV75;H0YJW3 P12814 841 849 ACTN1 Alpha-actinin-1 yes no 2 0.04318 32.841 By MS/MS 1 1.0934 0.94699 NaN 1 Median NaN NaN NaN 0 0 Median 1.0934 0.94699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4538700 2353500 2185200 0 0 0 4538700 2353500 2185200 0 0 0 0 0 0 0 0 0 0 0 0 26791 1983 28216 142422 143343 143343 1 NYIVEDGDIIFFK ENAVKAAGKYRQQGRNYIVEDGDIIFFKFN GRNYIVEDGDIIFFKFNTPQQPKKK_____ R N Y F K F 0 0 1 2 0 0 1 1 0 3 0 1 0 2 0 0 0 0 1 1 0 0 13 0 1571.7872 J3KQ32;Q9NTK5 J3KQ32 394 406 OLA1 Obg-like ATPase 1 yes no 2 5.2437E-07 120.68 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.80869 0.75473 39.212 6 Median 0.51207 0.49881 43.33 2 0 Median 0.87807 0.76898 30.831 2 0 Median 1.1144 1.1056 NaN 1 1 Median 0.94415 0.84059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25636000 11826000 13810000 1939900 1178600 761270 20530000 9210100 11320000 3009500 1346600 1663000 156850 91052 65800 0 0 0 0 0 0 26792 1315 28217 142423;142424;142425;142426;142427;142428 143344;143345;143346;143347 143347 4 NYKSEEEFIHINNK LRGEGVKLQVMANSRNYKSEEEFIHINNKL RNYKSEEEFIHINNKLRRGDIIGVQGNPGK R N Y N K L 0 0 3 0 0 0 3 0 1 2 0 2 0 1 0 1 0 0 1 0 0 0 14 1 1763.8479 Q15046;H3BVA8;J3KRL2 Q15046 162 175 KARS Lysine--tRNA ligase yes no 3;4 0.00027825 57.434 By MS/MS By matching 4 1 1.0242 0.98658 5.8926 5 Median 1.0475 1.0082 6.6009 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90802 0.98658 NaN 1 0 Median NaN NaN NaN 0 0 Median 33890000 15872000 18019000 31029000 14385000 16644000 0 0 0 0 0 0 0 0 0 2861200 1486600 1374600 0 0 0 26793 2919 28218 142429;142430;142431;142432;142433 143348;143349;143350;143351 143349 4 NYLEGIYNVPVAAVR VQFRIPMEMTRVDLRNYLEGIYNVPVAAVR NYLEGIYNVPVAAVRTRVQHGSNKRRDHRN R N Y V R T 2 1 2 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 3 0 0 15 0 1676.8886 H7C2P7;A6NJD9;A8MVT4;A8MYK1;Q16540 H7C2P7 50 64 MRPL23 39S ribosomal protein L23, mitochondrial yes no 2;3 1.5681E-11 110.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1 1.0514 0.98447 18.716 9 Median 0.99377 0.97105 10.42 2 0 Median 1.2925 1.0725 16.552 3 0 Median 0.80847 0.8195 15.353 2 0 Median 1.5426 1.2729 NaN 1 0 Median 0.85877 0.90849 NaN 1 0 Median NaN NaN NaN 0 0 Median 37989000 18975000 19014000 22841000 11768000 11073000 3553400 1487600 2065800 8250700 4083400 4167200 867780 313090 554700 2476500 1322900 1153600 0 0 0 26794 524 28219 142434;142435;142436;142437;142438;142439;142440;142441;142442 143352;143353;143354;143355;143356;143357;143358;143359;143360 143352 9 NYLEPGKECVQPATK LPVILMDETLKFVARNYLEPGKECVQPATK NYLEPGKECVQPATKSCSFSACTDGISWPF R N Y T K S 1 0 1 0 1 1 2 1 0 0 1 2 0 0 2 0 1 0 1 1 0 0 15 1 1732.8454 P16615;H7C5W9 P16615 989 1003 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 3 0.0076197 37.182 By MS/MS 2 1.3285 1.2705 18.427 2 Median NaN NaN NaN 0 0 Median 1.3285 1.2705 18.427 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43524000 14552000 28972000 0 0 0 43524000 14552000 28972000 0 0 0 0 0 0 0 0 0 0 0 0 26795 2031 28220 142443;142444 143361;143362 143361 2 NYLHYSLYDQAEK HDADGQATLLNLLLRNYLHYSLYDQAEKLV LRNYLHYSLYDQAEKLVSKSVFPEQANNNE R N Y E K L 1 0 1 1 0 1 1 0 1 0 2 1 0 0 0 1 0 0 3 0 0 0 13 0 1642.7627 O43242 O43242 257 269 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2;3 2.2974E-06 158.56 By MS/MS By MS/MS By matching By matching 3 2 2 2 1.2993 1.0918 33.795 9 Median 1.139 1.0791 1.692 3 0 Median 1.3902 1.1736 10.453 2 0 Median 1.6447 1.6467 23.716 2 0 Median 1.8344 1.5798 72.823 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117370000 51884000 65484000 89892000 40556000 49336000 13615000 5709400 7906000 12264000 4963800 7300200 1595500 654450 941090 0 0 0 0 0 0 26796 1560 28221 142445;142446;142447;142448;142449;142450;142451;142452;142453 143363;143364;143365;143366;143367;143368;143369 143365 7 NYLLPAGYSLEEQR WVHDSCHANQLQNYRNYLLPAGYSLEEQRI RNYLLPAGYSLEEQRILDWQPRENPFQNLK R N Y Q R I 1 1 1 0 0 1 2 1 0 0 3 0 0 0 1 1 0 0 2 0 0 0 14 0 1651.8206 A6NNK5;Q12888 A6NNK5 1800 1813 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 8.1324E-07 124.1 By MS/MS By MS/MS 3 3 0.69354 0.67405 15.506 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61499 0.67156 9.5092 3 2 Median 0.93039 0.78568 14.874 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51686000 31389000 20297000 0 0 0 0 0 0 49188000 30200000 18988000 2498000 1189100 1308900 0 0 0 0 0 0 26797 530 28222 142454;142455;142456;142457;142458;142459 143370;143371;143372;143373;143374;143375;143376 143370 7 NYLLSLPHK PSQEDLNCIINLKARNYLLSLPHKNKVPWN INLKARNYLLSLPHKNKVPWNRLFPNADSK R N Y H K N 0 0 1 0 0 0 0 0 1 0 3 1 0 0 1 1 0 0 1 0 0 0 9 0 1083.6077 P28482 P28482 262 270 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 0.0012806 83.265 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.0448 0.88164 20.63 5 Median 0.95293 0.88037 NaN 1 1 Median 1.0543 0.90537 NaN 1 0 Median 0.84075 0.837 40.667 2 0 Median 1.0448 0.88164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32058000 15936000 16122000 17277000 8565700 8711300 1602200 755430 846750 11832000 5952800 5879200 1347000 662020 684980 0 0 0 0 0 0 26798 2166 28223 142460;142461;142462;142463;142464;142465 143377;143378;143379;143380;143381;143382 143379 6 NYLLSSSEDGTVR GHSGPVYGASFSPDRNYLLSSSEDGTVRLW DRNYLLSSSEDGTVRLWSLQTFTCLVGYKG R N Y V R L 0 1 1 1 0 0 1 1 0 0 2 0 0 0 0 3 1 0 1 1 0 0 13 0 1439.6892 Q15542 Q15542 556 568 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 2 4.8234E-07 107.83 By MS/MS By MS/MS 1 2 1.0189 0.97448 6.5703 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95843 1.0208 NaN 1 0 Median 1.0832 0.93024 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7424400 3298100 4126300 0 0 0 0 0 0 6500100 2901300 3598900 924270 396860 527410 0 0 0 0 0 0 26799 2957 28224 142466;142467;142468 143383;143384;143385;143386 143384 4 NYLSIFR KLGLVEFNILWNRIRNYLSIFRKFDLDKSG NILWNRIRNYLSIFRKFDLDKSGSMSAYEM R N Y F R K 0 1 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 7 0 911.4865 P07384 P07384 619 625 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.013989 75.311 By MS/MS By matching By matching 2 2 1 1.0633 1.0191 21.903 5 Median 1.0161 0.97768 5.8701 2 0 Median 1.1335 0.99349 36.101 2 0 Median NaN NaN NaN 0 0 Median 1.5458 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9448000 4338300 5109700 5804700 2826900 2977800 3429300 1432100 1997200 0 0 0 213940 79248 134690 0 0 0 0 0 0 26800 1886 28225 142469;142470;142471;142472;142473 143387;143388 143387 2 NYLSLAPLFFK AAVNVICELARRNPKNYLSLAPLFFKLMTS RNPKNYLSLAPLFFKLMTSSTNNWVLIKII K N Y F K L 1 0 1 0 0 0 0 0 0 0 3 1 0 2 1 1 0 0 1 0 0 0 11 0 1311.7227 O14617;A0A2R8Y4J3;A0A087WYN6 O14617 217 227 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.0091599 39.148 By matching By MS/MS By matching By matching 3 2 2 1 1.0923 0.99846 121.09 8 Median 0.93268 0.92628 9.0139 3 0 Median 0.93162 0.8204 14.047 2 0 Median NaN NaN NaN 0 0 Median 1.4728 1.2899 15.05 2 0 Median 29.428 29.457 NaN 1 0 Median NaN NaN NaN 0 0 Median 18495000 6075900 12419000 10237000 4936400 5300200 1666700 834170 832550 0 0 0 151650 68929 82720 6439800 236430 6203300 0 0 0 26801 1485 28226 142474;142475;142476;142477;142478;142479;142480;142481 143389;143390 143390 2 NYLSPTFK VLKNTKTPVKFWFLKNYLSPTFKEFIPYMA VKFWFLKNYLSPTFKEFIPYMANEYNFQYE K N Y F K E 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 1 0 0 0 8 0 968.49673 Q9NYU2;H7BZG0;Q9NYU1 Q9NYU2 1293 1300 UGGT1;UGGT2 UDP-glucose:glycoprotein glucosyltransferase 1;UDP-glucose:glycoprotein glucosyltransferase 2 yes no 2 0.012206 74.127 By MS/MS 1 1.5301 1.4727 NaN 1 Median 1.5301 1.4727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6388100 2774700 3613400 6388100 2774700 3613400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26802 4179 28227 142482 143391 143391 1 NYLWREENAEQQALAAK YYEVKNKKDELQSERNYLWREENAEQQALA LWREENAEQQALAAKREDLEKKQQLLRAAT R N Y A K R 4 1 2 0 0 2 3 0 0 0 2 1 0 0 0 0 0 1 1 0 0 0 17 1 2032.9967 Q9UQE7 Q9UQE7 470 486 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.8176E-07 87.566 By MS/MS By MS/MS 2 1 0.91932 1.0422 9.5477 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98668 1.1183 9.9683 2 0 Median NaN NaN NaN 0 0 Median 0.88409 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 27673000 14315000 13357000 0 0 0 0 0 0 22634000 11784000 10850000 0 0 0 5038300 2531200 2507100 0 0 0 26803 4362 28228 142483;142484;142485 143392;143393;143394;143395;143396 143392 5 NYMAFLDSQTATFSR IIETNVKPSILEAQKNYMAFLDSQTATFSR NYMAFLDSQTATFSRHKKRLLVVRELKEQA K N Y S R H 2 1 1 1 0 1 0 0 0 0 1 0 1 2 0 2 2 0 1 0 0 0 15 0 1750.7985 O95163;F5H2T0;H0YDF3 O95163 1119 1133 IKBKAP Elongator complex protein 1 yes no 2 0.00036566 59.542 By MS/MS 2 0.97459 0.97888 17.084 2 Median 0.97459 0.97888 17.084 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3782900 1924600 1858300 3782900 1924600 1858300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26804 1749 28229 142486;142487 143397;143398 143398 2 NYMSNPSYNYEIVNR SAEEISDAIREKMKKNYMSNPSYNYEIVNR NYMSNPSYNYEIVNRASLACGPMVKWAIAQ K N Y N R A 0 1 4 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 3 1 0 0 15 0 1862.8257 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3370 3384 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 2.2031E-27 204.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 5 1 2 0.9166 0.86265 17.229 18 Median 0.81571 0.79266 12.793 4 0 Median 1.0849 0.87622 5.8523 3 0 Median 0.87358 0.90894 15.594 3 0 Plateau 0.92208 0.80719 17.528 5 0 Median 1.2066 1.2675 NaN 1 0 Median 1.1003 0.91681 16.753 2 0 Median 244430000 125210000 119230000 118130000 61998000 56132000 16202000 7578000 8623800 89814000 45894000 43920000 16130000 7613400 8516200 3104500 1615500 1489000 1053500 507890 545610 26805 2865 28230;28231 142488;142489;142490;142491;142492;142493;142494;142495;142496;142497;142498;142499;142500;142501;142502;142503;142504;142505 143399;143400;143401;143402;143403;143404;143405;143406;143407;143408;143409;143410;143411;143412;143413;143414;143415;143416;143417 143406 1557 19 NYNFGGEFVEAMIR KLTIYTTLVGLLNARNYNFGGEFVEAMIRQ RNYNFGGEFVEAMIRQLKESLKANNYNEAV R N Y I R Q 1 1 2 0 0 0 2 2 0 1 0 0 1 2 0 0 0 0 1 1 0 0 14 0 1645.7559 Q09161 Q09161 97 110 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.000648 64.82 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1 1.312 1.2243 7.5376 7 Median 1.2966 1.2838 NaN 1 0 Median 1.3462 1.1811 NaN 1 1 Median 1.2583 1.3221 8.5624 2 1 Median 1.3435 1.1061 NaN 1 0 Median 1.1152 1.1823 NaN 1 0 Median 1.4417 1.2243 NaN 1 0 Median 7873000 3596600 4276400 1799500 827690 971790 1557700 656290 901440 1763300 832670 930670 100770 39121 61645 2536600 1194500 1342000 115090 46276 68816 26806 2747 28232 142506;142507;142508;142509;142510;142511;142512 143418;143419;143420;143421;143422 143418 5 NYNVPYEPDSVVMAEAPPGVETDLIDVGFTDDVKK PPKILVERYLIEIAKNYNVPYEPDSVVMAE ETDLIDVGFTDDVKKGGPGRGGSGGFTAPV K N Y K K G 2 0 2 5 0 0 3 2 0 1 1 2 1 1 4 1 2 0 2 6 0 0 35 1 3822.8186 P53990;H3BMU1;H3BUI0;J3KR23 P53990 172 206 IST1 IST1 homolog yes no 3 0.003398 25.688 By MS/MS 1 0.4006 0.42206 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4006 0.42206 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2559600 1261600 1298000 0 0 0 0 0 0 2559600 1261600 1298000 0 0 0 0 0 0 0 0 0 26807 2477 28233 142513 143423 143423 1 NYPATFWVNPQFK YEGTWRRGSTAGGCRNYPATFWVNPQFKIR CRNYPATFWVNPQFKIRLDETDDPDDYGDR R N Y F K I 1 0 2 0 0 1 0 0 0 0 0 1 0 2 2 0 1 1 1 1 0 0 13 0 1610.7882 P07384 P07384 386 398 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00038796 74.684 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.82481 0.79946 16.588 5 Median 0.78968 0.73475 11.936 2 0 Median 0.94199 0.83588 NaN 1 0 Median 0.76244 0.79321 NaN 1 0 Median 1.2212 1.0693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30545000 17265000 13280000 22110000 12520000 9589500 1666300 912450 753820 6324900 3627500 2697500 444070 204950 239110 0 0 0 0 0 0 26808 1886 28234 142514;142515;142516;142517;142518 143424;143425;143426;143427;143428 143428 5 NYPATVHGALLSGLR QPIPRLFFAGEHTIRNYPATVHGALLSGLR NYPATVHGALLSGLREAGRIADQFLGAMYT R N Y L R E 2 1 1 0 0 0 0 2 1 0 3 0 0 0 1 1 1 0 1 1 0 0 15 0 1567.8471 O60341;R4GMQ1;R4GMP9 O60341 806 820 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 1.6904E-10 131.37 By MS/MS By MS/MS By matching 2 2 2 1.104 1.1101 16.77 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83988 0.889 7.044 2 0 Median 1.4199 1.2097 15.336 2 2 Median 1.104 1.1588 2.8698 2 0 Median NaN NaN NaN 0 0 Median 54616000 29182000 25434000 0 0 0 0 0 0 46244000 25173000 21071000 3164200 1448700 1715500 5207800 2560300 2647500 0 0 0 26809 1613 28235 142519;142520;142521;142522;142523;142524 143429;143430;143431;143432;143433;143434;143435;143436 143434 8 NYPDPVSIIQK LVLASDGQKMSKRKKNYPDPVSIIQKYGAD KRKKNYPDPVSIIQKYGADALRLYLINSPV K N Y Q K Y 0 0 1 1 0 1 0 0 0 2 0 1 0 0 2 1 0 0 1 1 0 0 11 0 1272.6714 P41252;A0A0A0MSX9;J3KR24 P41252 607 617 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.040515 27.742 By MS/MS By matching 1 1 0.66577 0.61411 9.6827 2 Median 0.58836 0.57347 NaN 1 0 Median 0.75338 0.65763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8105700 4614300 3491400 5366200 3093500 2272800 2739500 1520800 1218700 0 0 0 0 0 0 0 0 0 0 0 0 26810 2302 28236 142525;142526 143437;143438 143437 2 NYPNTFWMNPQYLIK MDGNWRRGSTAGGCRNYPNTFWMNPQYLIK NYPNTFWMNPQYLIKLEEEDEDEEDGESGC R N Y I K L 0 0 3 0 0 1 0 0 0 1 1 1 1 1 2 0 1 1 2 0 0 0 15 0 1927.9291 P17655 P17655 376 390 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.0008622 45.359 By MS/MS 1 0.76095 0.70528 NaN 1 Median 0.76095 0.70528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6355200 3449900 2905300 6355200 3449900 2905300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26811 2045 28237 142527 143439 143439 1 NYPPWQHTTLSVLR QPLQKPSHCTIYVAKNYPPWQHTTLSVLRK KNYPPWQHTTLSVLRKHFEANNGKLPDNKV K N Y L R K 0 1 1 0 0 1 0 0 1 0 2 0 0 0 2 1 2 1 1 1 0 0 14 0 1710.8842 Q9P2J5 Q9P2J5 943 956 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2;3 0.00023811 57.136 By MS/MS By matching By MS/MS By matching 2 1 1 2 0.79678 0.80919 10.641 6 Median 0.79678 0.76801 2.3876 2 0 Median 1.0998 0.93938 NaN 1 0 Median 0.732 0.80225 NaN 1 1 Median 0.88894 0.89554 13.12 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26365000 13810000 12555000 20098000 10716000 9382700 3047800 1500800 1547000 2473700 1290200 1183500 745030 303520 441510 0 0 0 0 0 0 26812 4224 28238 142528;142529;142530;142531;142532;142533 143440;143441;143442;143443;143444 143440 5 NYQQNYQNSESGEKNEGSESAPEGQAQQR RNHYRRYPRRRGPPRNYQQNYQNSESGEKN NEGSESAPEGQAQQRRPYRRRRFPPYYMRR R N Y Q R R 2 1 4 0 0 6 5 3 0 0 0 1 0 0 1 4 0 0 2 0 0 0 29 1 3256.3889 P67809;H0Y449;C9J5V9 P67809 157 185 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3;4 2.6614E-54 131.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 2 0.85509 0.82847 16.743 10 Median 0.85908 0.86211 5.6508 2 0 Median 0.76552 0.69809 22.927 3 0 Median 0.89165 0.90173 NaN 1 0 Median 0.78408 0.75189 NaN 1 0 Median 1.0802 1.1172 NaN 1 0 Median 0.85227 0.7686 10.628 2 0 Median 53599000 25967000 27632000 12486000 6118800 6366900 21258000 9806900 11451000 3169400 1777000 1392400 4723300 2552400 2171000 4665300 1945800 2719500 7297200 3765900 3531200 26813 2627 28239 142534;142535;142536;142537;142538;142539;142540;142541;142542;142543;142544 143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460;143461;143462;143463 143453 19 NYQSQADIPIR INSSNVHVGSRGSKKNYQSQADIPIRSPFG GSKKNYQSQADIPIRSPFGIVKASWLPKFS K N Y I R S 1 1 1 1 0 2 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1303.6521 Q14966 Q14966 372 382 ZNF638 Zinc finger protein 638 yes yes 2 7.616E-08 130.75 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.97875 0.85934 12.974 5 Median NaN NaN NaN 0 0 Median 0.85363 0.84569 NaN 1 0 Median 0.83611 0.91134 NaN 1 1 Median 0.97875 0.85934 NaN 1 0 Median 1.0866 1.13 NaN 1 1 Median 0.9806 0.81599 NaN 1 1 Median 35802000 18091000 17711000 0 0 0 877290 464140 413150 24224000 13008000 11216000 2157000 1032000 1125100 6293800 2612500 3681300 2249600 974180 1275400 26814 2903 28240 142545;142546;142547;142548;142549 143464;143465;143466;143467 143464 4 NYQVLPDR RGGVINLRLSETWLRNYQVLPDRSHPKLLM LSETWLRNYQVLPDRSHPKLLMSGGGGYLL R N Y D R S 0 1 1 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 8 0 1003.5087 Q9UJA5 Q9UJA5 432 439 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.011566 75.109 By MS/MS 1 1.1831 1.1813 NaN 1 Median 1.1831 1.1813 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2708200 1083400 1624800 2708200 1083400 1624800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26815 4294 28241 142550 143468 143468 1 NYQVQFVTLK ITTEGMINGLHPVNKNYQVQFVTLKTFEEA HPVNKNYQVQFVTLKTFEEAAAQLLESSVQ K N Y L K T 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 10 0 1238.6659 Q9UKN8 Q9UKN8 507 516 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.0068418 67.563 By MS/MS 2 0.95566 1.042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95566 1.042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11741000 7164600 4576200 0 0 0 0 0 0 11741000 7164600 4576200 0 0 0 0 0 0 0 0 0 26816 4314 28242 142551;142552 143469;143470 143470 2 NYSPYYNTIDDLKDQIVDLTVGNNK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K N Y N K T 0 0 4 4 0 1 0 1 0 2 2 2 0 0 1 1 2 0 3 2 0 0 25 1 2901.4032 P35527;CON__P35527 P35527 200 224 KRT9 Keratin, type I cytoskeletal 9 yes no 3 5.8455E-15 78.916 By MS/MS By MS/MS By MS/MS 4 2 1 0.030722 0.032277 67.603 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.030722 0.032277 67.603 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42401000 42316000 84485 0 0 0 29711000 29711000 0 6468000 6383500 84485 0 0 0 6221400 6221400 0 0 0 0 + 26817 2242 28243 142553;142554;142555;142556;142557;142558;142559 143471;143472;143473;143474;143475;143476;143477;143478 143478 8 NYTDEAIETDDLTIK AIGRGAKSVREFLEKNYTDEAIETDDLTIK NYTDEAIETDDLTIKLVIKALLEVVQSGGK K N Y I K L 1 0 1 3 0 0 2 0 0 2 1 1 0 0 0 0 3 0 1 0 0 0 15 0 1739.8101 O14818;H0Y586 O14818 175 189 PSMA7 Proteasome subunit alpha type-7 yes no 2 2.3317E-08 154.67 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1542 1.0349 7.1069 4 Median 1.0866 1.0028 NaN 1 0 Median 1.1775 0.98542 NaN 1 0 Median 1.1315 1.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3598 1.1527 NaN 1 0 Median 80320000 36488000 43832000 64501000 29701000 34800000 10389000 4508500 5880600 5258400 2207400 3051000 0 0 0 0 0 0 170930 70657 100270 26818 1497 28244 142560;142561;142562;142563 143479;143480;143481;143482 143480 4 NYTDNELEK VPFGGAKAGVKINPKNYTDNELEKITRRFT VKINPKNYTDNELEKITRRFTMELAKKGFI K N Y E K I 0 0 2 1 0 0 2 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 1124.4986 P00367 P00367 192 200 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2 0.0054075 71.692 By MS/MS By MS/MS 1 2 1.3343 1.1308 19.213 3 Median 0.92726 0.85645 NaN 1 1 Median 1.3963 1.1834 6.4252 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43469000 20991000 22478000 19820000 10951000 8868600 23649000 10040000 13609000 0 0 0 0 0 0 0 0 0 0 0 0 26819 1814 28245 142564;142565;142566 143483;143484;143485 143483 3 NYTLVTVFGNLHQAQLGGVPGTYQLVR EFVRQALAYLEQSYKNYTLVTVFGNLHQAQ QAQLGGVPGTYQLVRSFLNIKLPAPLPGLQ K N Y V R S 1 1 2 0 0 3 0 4 1 0 4 0 0 1 1 0 3 0 2 4 0 0 27 0 2944.5559 Q8N1F7;H3BVG0;H3BPA9 Q8N1F7 268 294 NUP93 Nuclear pore complex protein Nup93 yes no 3 3.9128E-05 29.47 By matching By MS/MS By matching By matching 1 1 1 1 0.93089 0.92404 17.813 4 Median 1.072 1.0714 NaN 1 0 Median 0.87345 0.75891 NaN 1 0 Median 0.75913 0.80931 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99211 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median 4571700 2331600 2240100 566000 262040 303960 2133500 1200800 932760 1010300 453180 557130 0 0 0 861870 415570 446300 0 0 0 26820 3356 28246 142567;142568;142569;142570 143486 143486 1 NYTQEASLGALQNLTAGSGPMPTSVAQTVVQK IVIRMYLSLIAKSVRNYTQEASLGALQNLT SGPMPTSVAQTVVQKESGLQHTRKMLHVGD R N Y Q K E 4 0 2 0 0 4 1 3 0 0 3 1 1 0 2 3 4 0 1 3 0 0 32 0 3260.6347 Q99959 Q99959 696 727 PKP2 Plakophilin-2 yes yes 3 0.013561 14.931 By matching By MS/MS By MS/MS 1 2 2 0.62724 0.64776 16.137 5 Median 0.67988 0.68657 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58953 0.63648 17.807 2 0 Median NaN NaN NaN 0 0 Median 0.54343 0.56116 20.296 2 0 Median NaN NaN NaN 0 0 Median 10383000 5783800 4599300 1152700 683370 469370 0 0 0 3600000 2207100 1392900 0 0 0 5630400 2893300 2737000 0 0 0 26821 3773 28247 142571;142572;142573;142574;142575 143487;143488;143489 143488 3 NYVDGAEKPGVNEQLYK FSATLAYTKLTKVLKNYVDGAEKPGVNEQL VDGAEKPGVNEQLYKAMKALESIFKFIVRS K N Y Y K A 1 0 2 1 0 1 2 2 0 0 1 2 0 0 1 0 0 0 2 2 0 0 17 1 1922.9374 A0A096LNH6;Q14185 A0A096LNH6 742 758 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 0.0012929 32.341 By MS/MS 1 1.026 0.9673 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.026 0.9673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5654700 2591000 3063700 0 0 0 0 0 0 0 0 0 5654700 2591000 3063700 0 0 0 0 0 0 26822 140 28248 142576 143490 143490 1 NYVHFAATQVQNR KGAIENLLAKLLEKKNYVHFAATQVQNRIK KKNYVHFAATQVQNRIKEVNETNKRVEQEI K N Y N R I 2 1 2 0 0 2 0 0 1 0 0 0 0 1 0 0 1 0 1 2 0 0 13 0 1546.7641 H0Y612;Q9UPN9 H0Y612 72 84 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 3 9.0959E-05 80.312 By MS/MS 2 0.64179 0.70479 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64179 0.70479 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3142900 1823600 1319200 0 0 0 0 0 0 3142900 1823600 1319200 0 0 0 0 0 0 0 0 0 26823 1152 28249 142577;142578 143491;143492 143492 2 NYVLNYLATRPK RTNNPLPLEQRIDIRNYVLNYLATRPKLAT DIRNYVLNYLATRPKLATFVTQALIQLYAR R N Y P K L 1 1 2 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 2 1 0 0 12 1 1450.7932 E7ESC6;Q9UIA9;H0YBE1 E7ESC6 89 100 XPO7 Exportin-7 yes no 3 0.00020397 63.091 By MS/MS By MS/MS By matching 2 1 1 1.0038 0.99749 18.384 4 Median 1.0596 1.0711 15.897 2 0 Median 1.0971 1.0395 NaN 1 0 Median 0.72275 0.77208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17697000 8721200 8975500 13426000 6511200 6914500 2117600 947220 1170400 2153500 1262800 890670 0 0 0 0 0 0 0 0 0 26824 885 28250 142579;142580;142581;142582 143493;143494;143495 143494 3 NYVLQTLGTETYR QRWLAIDANARREVKNYVLQTLGTETYRPS VKNYVLQTLGTETYRPSSASQCVAGIACAE K N Y Y R P 0 1 1 0 0 1 1 1 0 0 2 0 0 0 0 0 3 0 2 1 0 0 13 0 1556.7835 Q14974;J3QR48 Q14974 93 105 KPNB1 Importin subunit beta-1 yes no 2 2.1614E-06 109.42 By MS/MS By MS/MS By MS/MS 1 1 1 2.114 2.0662 32.484 3 Plateau 2.1795 2.0662 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.9176 2.0418 NaN 1 1 Median 1.3624 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14905000 5069800 9834700 7223900 2495400 4728500 0 0 0 6741900 2177000 4564900 938720 397450 541270 0 0 0 0 0 0 26825 2904 28251 142583;142584;142585 143496;143497;143498 143497 3 NYVTPVNR WWKGACHGQTGMFPRNYVTPVNRNV_____ QTGMFPRNYVTPVNRNV_____________ R N Y N R N 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 2 0 0 8 0 961.49813 P62993 P62993 208 215 GRB2 Growth factor receptor-bound protein 2 yes yes 2 0.0027345 105.39 By MS/MS By MS/MS 2 1 0.74104 0.69945 16.889 3 Median 0.73356 0.69077 1.7669 2 0 Median 1.0902 0.92475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7672100 3827300 3844800 5349300 2794400 2554900 2322800 1032800 1290000 0 0 0 0 0 0 0 0 0 0 0 0 26826 2613 28252 142586;142587;142588 143499;143500;143501 143499 3 NYYEQWGK FIGGLSFETTEESLRNYYEQWGKLTDCVVM TTEESLRNYYEQWGKLTDCVVMRDPASKRS R N Y G K L 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 8 0 1086.4771 P22626;A0A087WUI2 P22626 39 46 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 0.0044009 81.784 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 5 8 6 1.196 1.0797 11.027 28 Median 1.5677 1.4529 NaN 1 0 Median 1.2179 1.0301 8.8533 4 0 Median 1.0533 1.0029 5.9326 4 0 Median 1.3298 1.1256 10.731 5 0 Median 1.0691 1.1206 10.293 8 0 Median 1.2789 1.0414 7.146 6 0 Median 1725900000 807760000 918110000 12196000 4401000 7794800 55608000 25251000 30358000 295000000 143160000 151830000 131660000 54586000 77077000 983510000 471730000 511780000 247900000 108630000 139270000 26827 2103 28253 142589;142590;142591;142592;142593;142594;142595;142596;142597;142598;142599;142600;142601;142602;142603;142604;142605;142606;142607;142608;142609;142610;142611;142612;142613;142614;142615;142616 143502;143503;143504;143505;143506;143507;143508;143509;143510;143511;143512;143513;143514;143515;143516;143517;143518;143519;143520;143521;143522;143523;143524;143525;143526;143527;143528;143529;143530;143531;143532;143533;143534;143535;143536;143537 143505 36 NYYGYQGYR SYYYHHPQDRDRYYRNYYGYQGYR______ RDRYYRNYYGYQGYR_______________ R N Y Y R - 0 1 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 4 0 0 0 9 0 1182.5094 Q1KMD3 Q1KMD3 739 747 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.00049339 120.65 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 6 5 1.0871 0.96018 16.441 14 Median 0.95501 0.95331 NaN 1 0 Median 1.3388 1.1967 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5244 1.2959 NaN 1 0 Median 0.90659 0.93622 20.086 6 1 Median 1.1693 0.96711 8.0537 5 0 Median 98065000 47152000 50913000 1521900 717740 804140 1084100 490270 593880 0 0 0 3619500 1086100 2533500 78491000 38673000 39818000 13348000 6184800 7162900 26828 3002 28254 142617;142618;142619;142620;142621;142622;142623;142624;142625;142626;142627;142628;142629;142630 143538;143539;143540;143541;143542;143543;143544;143545;143546;143547;143548;143549 143543 11 NYYTPDR NVAKINREVLHSYLRNYYTPDRMVLAGVGV EVLHSYLRNYYTPDRMVLAGVGVEHEHLVD R N Y D R M 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 2 0 0 0 7 0 927.40865 Q10713 Q10713 244 250 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.031276 49.358 By matching By MS/MS By matching 1 1 1 1.2861 1.1048 28.037 3 Plateau 0.9502 0.92888 NaN 1 0 Median 1.2861 1.1048 NaN 1 0 Median 0.66185 0.63837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3538800 1527300 2011500 655490 301490 353990 2477900 1011400 1466400 405460 214370 191100 0 0 0 0 0 0 0 0 0 26829 2754 28255 142631;142632;142633 143550 143550 1 PAAAAAAATPAVR TQRVANTSTQTMGPRPAAAAAAATPAVRTV PRPAAAAAAATPAVRTVPQYKYAAGVRNPQ R P A V R T 8 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 13 0 1136.6302 P11940;E7EQV3;E7ERJ7;H0YB75;H0YAS6;H0YAS7;H0YAW6 P11940 494 506 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2 2.7399E-06 127.76 By MS/MS 1 0.33629 0.29176 NaN 1 Median NaN NaN NaN 0 0 Median 0.33629 0.29176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715100 2882300 832750 0 0 0 3715100 2882300 832750 0 0 0 0 0 0 0 0 0 0 0 0 26830 1973 28256 142634 143551;143552 143551 2 PAANFDAIR SEPATVTQVTQGTIRPAANFDAIRDAEILR TQGTIRPAANFDAIRDAEILRKAMKGFGTD R P A I R D 3 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 9 0 973.49813 P20073 P20073 181 189 ANXA7 Annexin A7 yes yes 2 0.002854 84.568 By MS/MS 2 0.90672 0.89753 35.582 2 Median 0.90672 0.89753 35.582 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8299500 4670800 3628700 8299500 4670800 3628700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26831 2073 28257 142635;142636 143553;143554 143554 2 PAAPPAPGPGQLTLR LTGFGGYDKVKLQSRPAAPPAPGPGQLTLR PAAPPAPGPGQLTLRLRACGLNFADLMARQ R P A L R L 3 1 0 0 0 1 0 2 0 0 2 0 0 0 5 0 1 0 0 0 0 0 15 0 1441.8041 Q99536;K7ERT7 Q99536 68 82 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 3.1957E-09 116.77 By MS/MS By matching By MS/MS 1 1 2 0.59856 0.58936 10.924 4 Median 0.50817 0.50866 NaN 1 0 Median 0.68523 0.59185 NaN 1 0 Median 0.59856 0.62432 8.7449 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39592000 27700000 11891000 28572000 19561000 9010600 286730 160980 125740 10733000 7978100 2755100 0 0 0 0 0 0 0 0 0 26832 3750 28258 142637;142638;142639;142640 143555;143556 143556 2 PAASGPLSHPTPLSAPPSSVPLK SQSAPPMSPFSSASKPAASGPLSHPTPLSA HPTPLSAPPSSVPLKSSVLPSPSGRSAQGS K P A L K S 3 0 0 0 0 0 0 1 1 0 3 1 0 0 7 5 1 0 0 1 0 0 23 0 2207.195 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 606 628 NUP214 Nuclear pore complex protein Nup214 yes no 3 1.2322E-05 53.342 By MS/MS By MS/MS 1 1 0.37066 0.37227 21.88 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39179 0.43457 NaN 1 1 Median 0.35066 0.31891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8627300 6167800 2459500 0 0 0 0 0 0 7788300 5556100 2232200 839000 611720 227280 0 0 0 0 0 0 26833 467 28259 142641;142642 143557;143558 143557 2 PAASITSKPATLTTTSATSK STASTTSTTNSTAAKPAASITSKPATLTTT TSKPATLTTTSATSKLIHPDEDISLEERRA K P A S K L 4 0 0 0 0 0 0 0 0 1 1 2 0 0 2 4 6 0 0 0 0 0 20 1 1933.0368 J3QRS9;X6R4W8;O43670;J3KS31 J3QRS9 359 378 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 2;3 1.2514E-20 163.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 1 2 0.7407 0.72675 15.663 12 Median 0.71212 0.66924 NaN 1 0 Median 0.61743 0.57932 17.883 2 0 Median 0.6328 0.68539 17.979 2 0 Median 0.84464 0.81145 9.5312 4 0 Median 0.78131 0.83357 NaN 1 0 Median 0.81357 0.73075 15.966 2 0 Median 185860000 103390000 82463000 9611000 5919400 3691600 7848600 4278600 3570000 49596000 28795000 20801000 105090000 56452000 48634000 5428200 2867600 2560700 8287400 5082500 3204900 26834 1353 28260 142643;142644;142645;142646;142647;142648;142649;142650;142651;142652;142653;142654;142655 143559;143560;143561;143562;143563;143564;143565;143566;143567;143568;143569;143570;143571;143572;143573;143574;143575;143576;143577 143574 19 PAAVAAENEEIGSHIK NQLTSDYGRLASEAKPAAVAAENEEIGSHI AAVAAENEEIGSHIKHRVQELGHGCAALVT K P A I K H 4 0 1 0 0 0 3 1 1 2 0 1 0 0 1 1 0 0 0 1 0 0 16 0 1634.8264 Q9Y490 Q9Y490 1902 1917 TLN1 Talin-1 yes yes 3 1.9895E-10 134.9 By MS/MS By MS/MS By MS/MS 1 2 1 0.88653 0.79537 15.539 4 Median 0.61713 0.59642 NaN 1 0 Median 0.89814 0.79926 5.5967 2 0 Median NaN NaN NaN 0 0 Median 0.91447 0.82345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68940000 36195000 32746000 8288800 5641000 2647800 54446000 27238000 27208000 0 0 0 6205700 3315600 2890100 0 0 0 0 0 0 26835 4441 28261 142656;142657;142658;142659 143578;143579;143580;143581;143582;143583;143584;143585 143581 8 PAAVATAMAR NKSKSLNYTGEKKEKPAAVATAMARVLRET EKKEKPAAVATAMARVLRETKPIPNLIFAI K P A A R V 5 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 10 0 957.50659 Q9NVI1;H3BP78 Q9NVI1 1233 1242 FANCI Fanconi anemia group I protein yes no 2 0.017388 43.808 By MS/MS By matching 1 1 1.076 0.89179 6.8124 2 Median NaN NaN NaN 0 0 Median 1.0045 0.84985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1526 0.9358 NaN 1 0 Median 7200600 3073100 4127500 0 0 0 5850600 2614300 3236300 0 0 0 0 0 0 0 0 0 1350000 458880 891150 26836 4132 28262 142660;142661 143586;143587 143586 1887 2 PAAVVLQTK TPIWIERVVIIGAGKPAAVVLQTKGSPESR IIGAGKPAAVVLQTKGSPESRLSFQHDPET K P A T K G 2 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 2 0 0 9 0 925.55967 E9PKU7;Q14697;F5H6X6 Q14697 900 908 GANAB Neutral alpha-glucosidase AB no no 2 0.00073393 101.43 By matching By MS/MS 1 2 1.0794 0.90924 5.2905 3 Median 0.90398 0.8555 NaN 1 0 Median 1.0832 0.92968 3.1436 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29365000 14268000 15096000 347540 167700 179850 29017000 14101000 14916000 0 0 0 0 0 0 0 0 0 0 0 0 26837 2896;951 28263 142662;142663;142664 143588;143589;143590;143591 143590 4 PAAVYPLSPACIR SASRVAGIIGAAECRPAAVYPLSPACIRHS CRPAAVYPLSPACIRHSSCAGTDPDTC___ R P A I R H 3 1 0 0 1 0 0 0 0 1 1 0 0 0 3 1 0 0 1 1 0 0 13 0 1413.7439 Q5T6K5 Q5T6K5 289 301 NFYC yes yes 2 0.01907 31.422 By MS/MS 1 1.0371 0.83016 NaN 1 Median NaN NaN NaN 0 0 Median 1.0371 0.83016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19170000 9123300 10047000 0 0 0 19170000 9123300 10047000 0 0 0 0 0 0 0 0 0 0 0 0 26838 3091 28264 142665 143592 143592 1 PADEIAVDR IYSVTRKRYAHLSARPADEIAVDRDVPWGV AHLSARPADEIAVDRDVPWGVDSLITLAFQ R P A D R D 2 1 0 2 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 9 0 984.48762 Q16658 Q16658 159 167 FSCN1 Fascin yes yes 2 0.00041855 130.56 By MS/MS By MS/MS By MS/MS 2 1 1 0.95674 0.83191 4.0355 3 Median NaN NaN NaN 0 0 Median 0.95674 0.80215 NaN 1 0 Median 0.8083 0.83191 NaN 1 0 Median 1.0076 0.86947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41636000 20693000 20943000 0 0 0 35083000 17128000 17954000 5218800 2842600 2376200 1334600 722000 612600 0 0 0 0 0 0 26839 2993 28265 142666;142667;142668;142669 143593;143594;143595;143596;143597;143598;143599 143597 7 PAEAPTAPSPAQTLENSEPAPVSQLQSR ATDAAPKRVEIQMPKPAEAPTAPSPAQTLE LENSEPAPVSQLQSRLEPKPQPPVAEATPR K P A S R L 5 1 1 0 0 3 3 0 0 0 2 0 0 0 6 4 2 0 0 1 0 0 28 0 2872.4203 Q9UHD8;K7EJ51;K7ER14;K7EJL9 Q9UHD8 195 222 SEPT9 Septin-9 yes no 3 9.4954E-28 94.72 By MS/MS By MS/MS 2 1 0.36569 0.37271 32.94 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29344 0.30336 29.118 2 1 Median 0.55081 0.47355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14985000 11774000 3211300 0 0 0 0 0 0 13959000 11155000 2804100 1026300 619100 407190 0 0 0 0 0 0 26840 4276 28266 142670;142671;142672 143600;143601;143602 143601 3 PAEDMEEEQAFKR ETFPNTETNGEFGKRPAEDMEEEQAFKRSR KRPAEDMEEEQAFKRSRNTDEMVELRILLQ R P A K R S 2 1 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 13 1 1578.6984 P61978;S4R457;Q5T6W2 P61978 23 35 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 3 0.000203 63.76 By MS/MS By MS/MS 1 1 0.79491 0.81484 3.8361 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7477 0.83725 NaN 1 0 Median 0.84511 0.79304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10670000 6074600 4595000 0 0 0 0 0 0 7366100 4334500 3031600 3303500 1740100 1563400 0 0 0 0 0 0 26841 2565;3093 28267 142673;142674 143603;143604 143603 2 PAEPPAWAGGAR VAVGKPRAGGDAEPRPAEPPAWAGGARPGP EPRPAEPPAWAGGARPGPGVWDPNWDRREP R P A A R P 4 1 0 0 0 0 1 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 12 0 1178.5833 Q96HS1 Q96HS1 41 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00019561 85.731 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0555 0.90742 27.935 4 Median 1.594 1.4899 NaN 1 1 Median 0.96231 0.80212 NaN 1 0 Median 0.86757 0.85282 NaN 1 1 Median 1.1578 0.96551 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19652000 8357500 11295000 9652900 3390800 6262100 5032500 2453400 2579100 2717400 1458100 1259300 2249300 1055200 1194100 0 0 0 0 0 0 26842 3669 28268 142675;142676;142677;142678 143605;143606;143607;143608 143607 4 PAFFAEK IEKCLTAIVKCATSKPAFFAEKLHQAMKGV IVKCATSKPAFFAEKLHQAMKGVGTRHKAL K P A E K L 2 0 0 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 7 0 808.41194 P04083 P04083 275 281 ANXA1 Annexin A1 yes yes 2 0.009327 84.244 By MS/MS By MS/MS 2 2 1.1188 0.94627 15.428 4 Median 0.94185 0.90277 26.016 2 0 Median 1.1188 0.94627 3.8906 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31232000 14219000 17013000 6324200 3041900 3282300 24908000 11177000 13731000 0 0 0 0 0 0 0 0 0 0 0 0 26843 1844 28269 142679;142680;142681;142682 143609;143610;143611;143612;143613 143610 5 PAGPVQAVPPPPPVPTEPK ______________________________ VQAVPPPPPVPTEPKQPTEEEASSKEDSAP M P A P K Q 2 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1 0 0 3 0 0 19 0 1874.0302 Q15459;F8WB66;F8WC79 Q15459 2 20 SF3A1 Splicing factor 3A subunit 1 yes no 2;3 1.5098E-20 114.24 By MS/MS By MS/MS By MS/MS 2 1 2 0.22439 0.24335 15.213 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19301 0.20872 21.706 2 0 Median 0.29155 0.24715 NaN 1 0 Median 0.21469 0.2208 16.254 2 1 Median NaN NaN NaN 0 0 Median 67475000 55314000 12162000 0 0 0 0 0 0 51575000 42579000 8995500 1951400 1457300 494130 13949000 11277000 2672000 0 0 0 26844 2954 28270 142683;142684;142685;142686;142687 143614;143615;143616;143617;143618 143616 4 PAGVLGAVNKPLSATGR ISEETRVLLLTGKPKPAGVLGAVNKPLSAT GVLGAVNKPLSATGRKPYVRSTGTETGSNI K P A G R K 3 1 1 0 0 0 0 3 0 0 2 1 0 0 2 1 1 0 0 2 0 0 17 1 1606.9155 Q29RF7 Q29RF7 1137 1153 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 6.6993E-91 253.54 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 5 2 2 3 0.85766 0.86503 14.434 15 Median 0.95696 0.97949 7.8651 2 0 Median 0.8917 0.84011 NaN 1 0 Median 0.65875 0.74809 17.748 5 0 Median 0.95303 0.91796 8.3987 2 0 Median 0.79639 0.89086 14.486 2 0 Median 1.0303 0.76844 9.3782 3 0 Plateau 182690000 103910000 78781000 8380500 4287400 4093100 3383300 1731100 1652200 130170000 77924000 52244000 27863000 13184000 14679000 9567400 5176300 4391100 3328800 1607800 1720900 26845 3003 28271 142688;142689;142690;142691;142692;142693;142694;142695;142696;142697;142698;142699;142700;142701;142702 143619;143620;143621;143622;143623;143624;143625;143626;143627 143623 8 PAILTATRPITK AGGEKTIQTVPTGAKPAILTATRPITKMIV GAKPAILTATRPITKMIVTQPKGIGSTVQP K P A T K M 2 1 0 0 0 0 0 0 0 2 1 1 0 0 2 0 3 0 0 0 0 0 12 1 1280.7816 E9PMC9;Q7Z589;H0YCS3 E9PMC9 537 548 C11orf30;EMSY Protein EMSY yes no 3 0.053081 16.35 By MS/MS 1 0.83752 0.95105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83752 0.95105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049800 1304200 1745600 0 0 0 0 0 0 3049800 1304200 1745600 0 0 0 0 0 0 0 0 0 26846 966 28272 142703 143628 143628 1 PAIMTMLADHAAR ______________________________ ______________________________ M P A A R Q 4 1 0 1 0 0 0 0 1 1 1 0 2 0 1 0 1 0 0 0 0 0 13 0 1396.6955 O14980;C9JKM9;C9J673;C9IZS4;C9JQ02;C9JV99;F8WF71;C9JF49;C9IYM2 O14980 2 14 XPO1 Exportin-1 yes no 3 0.00011871 73.466 By MS/MS By matching By matching 1 1 1 1.0249 0.90355 15.344 3 Median 0.87924 0.84785 NaN 1 0 Median 1.0249 0.90355 NaN 1 0 Median 1.0625 1.1351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11824000 6001500 5822700 8843000 4671700 4171300 972880 523010 449870 2008300 806800 1201500 0 0 0 0 0 0 0 0 0 26847 1510 28273 142704;142705;142706 143629;143630 143630 2 PALDIWPYPSPR KGGIREVPYFNYNAKPALDIWPYPSPRPTF NAKPALDIWPYPSPRPTFGITWRYRLQTVK K P A P R P 1 1 0 1 0 0 0 0 0 1 1 0 0 0 4 1 0 1 1 0 0 0 12 0 1410.7296 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1875 1886 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 5.3674E-06 161.76 By MS/MS By MS/MS By matching 2 1 1 0.61678 0.606 33.245 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51598 0.55872 19.183 2 0 Median 0.65975 0.57391 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2573 1.0547 NaN 1 0 Median 11880000 7831400 4048200 0 0 0 0 0 0 11045000 7326900 3718300 798020 486690 311340 0 0 0 36402 17791 18612 26848 2762 28274 142707;142708;142709;142710 143631;143632;143633;143634;143635;143636;143637;143638 143633 8 PALEEDVIYHVK RKAPSRDEPCSSTSRPALEEDVIYHVKYDD TSRPALEEDVIYHVKYDDYPENGVVQMNSR R P A V K Y 1 0 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 1 2 0 0 12 0 1411.7347 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 189 200 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.017065 47.288 By MS/MS By MS/MS 1 1 0.68653 0.66917 9.9199 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56994 0.62384 NaN 1 0 Median 0.82696 0.7178 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10006000 6217400 3789000 0 0 0 0 0 0 8287500 5086800 3200700 1718900 1130600 588300 0 0 0 0 0 0 26849 20 28275 142711;142712 143639;143640 143640 1 PALELLEPIEQK VSTTVETKEPEKEIRPALELLEPIEQKFVS EIRPALELLEPIEQKFVSISDLLVPKDLGT R P A Q K F 1 0 0 0 0 1 3 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 12 0 1378.7708 P50395 P50395 368 379 GDI2 Rab GDP dissociation inhibitor beta yes yes 2 9.5523E-05 91.867 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.76166 0.69037 9.592 4 Median 0.81991 0.80697 NaN 1 0 Median 0.80327 0.68054 NaN 1 0 Median 0.71385 0.70035 NaN 1 0 Median 0.72221 0.64444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20868000 11745000 9123500 929400 500020 429380 13358000 7326000 6031700 6046200 3610500 2435600 534850 308030 226810 0 0 0 0 0 0 26850 2411 28276 142713;142714;142715;142716 143641;143642;143643;143644 143641 4 PALLHSTFFPALQGAQTK FRMTRDVAPRIGYPKPALLHSTFFPALQGA LHSTFFPALQGAQTKMSASDPNSSIFLTDT K P A T K M 3 0 0 0 0 2 0 1 1 0 3 1 0 2 2 1 2 0 0 0 0 0 18 0 1926.0363 P23381;H0YJP3 P23381 332 349 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes no 3 0.017269 18.455 By matching By MS/MS By matching 1 1 1 0.93159 0.88091 2.9701 3 Median 0.93159 0.89203 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86572 0.88091 NaN 1 0 Median 0.96469 0.84298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7124400 3411000 3713400 2997200 1251400 1745800 0 0 0 3640900 1913400 1727500 486260 246180 240070 0 0 0 0 0 0 26851 2111 28277 142717;142718;142719 143645;143646 143645 2 PALPFILR AKNLDADIWKKFLSRPALPFILRLLRGLAI WKKFLSRPALPFILRLLRGLAIQHPGTQVL R P A L R L 1 1 0 0 0 0 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 8 0 925.57492 Q5T4S7;X6R960 Q5T4S7 4717 4724 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0098457 77.748 By MS/MS 2 1.9502 1.9119 NaN 1 Median 1.9502 1.9119 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11079000 3656800 7422500 11079000 3656800 7422500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26852 3089 28278 142720;142721 143647;143648 143647 2 PANFLDLGGGVK LAMATCDIIFLNGGKPANFLDLGGGVKEAQ GGKPANFLDLGGGVKEAQVYQAFKLLTADP K P A V K E 1 0 1 1 0 0 0 3 0 0 2 1 0 1 1 0 0 0 0 1 0 0 12 0 1186.6346 Q96I99;E9PDQ8 Q96I99 327 338 SUCLG2 Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial yes no 2 0.010069 56.729 By MS/MS 1 0.91793 0.85672 NaN 1 Median 0.91793 0.85672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4671700 2373400 2298300 4671700 2373400 2298300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26853 3678 28279 142722 143649 143649 1 PANKQEDEVMR IPGEPGFPLNAIYAKPANKQEDEVMRAYLQ IYAKPANKQEDEVMRAYLQQLRQETGLRLC K P A M R A 1 1 1 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 11 1 1315.619 O15145 O15145 120 130 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 3 6.3289E-05 74.944 By matching By MS/MS By matching By matching 2 1 1 1 0.92153 0.90264 5.5218 5 Median 0.87814 0.90105 3.4147 2 0 Median 1.1105 0.97969 NaN 1 0 Median 0.8259 0.84505 NaN 1 0 Median 1.0197 0.90264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051300 1504700 1546600 565110 303430 261680 1270400 579070 691350 979650 518050 461590 236080 104150 131930 0 0 0 0 0 0 26854 1527 28280 142723;142724;142725;142726;142727 143650;143651 143651 2 PAPAVGEAEDKENQQATSGPNQPSVR TYRPRYRSRGPPRPRPAPAVGEAEDKENQQ ENQQATSGPNQPSVRRGYRRPYNYRRRPRP R P A V R R 4 1 2 1 0 3 3 2 0 0 0 1 0 0 4 2 1 0 0 2 0 0 26 1 2676.2739 P16989 P16989 301 326 YBX3 Y-box-binding protein 3 yes yes 3;4 5.9222E-22 88.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 1 0.52883 0.54235 28.962 12 Median 0.38414 0.3838 3.3285 2 0 Median 0.80451 0.73463 41.609 2 1 Median 0.4586 0.46396 14.66 3 1 Median 0.61031 0.57271 21.165 4 2 Median 0.72447 0.75227 NaN 1 1 Median NaN NaN NaN 0 0 Median 62417000 40408000 22009000 10836000 7510200 3326300 12677000 8014500 4662400 8820600 6362400 2458200 26371000 16153000 10218000 3712500 2367800 1344700 0 0 0 26855 2033 28281 142728;142729;142730;142731;142732;142733;142734;142735;142736;142737;142738;142739 143652;143653;143654;143655;143656;143657;143658;143659;143660;143661;143662;143663;143664;143665;143666 143660 15 PAPNAAPVDPTLR QSVKAREEGRAPEQRPAPNAAPVDPTLRTK QRPAPNAAPVDPTLRTKQPIPAAYNRYDQE R P A L R T 3 1 1 1 0 0 0 0 0 0 1 0 0 0 4 0 1 0 0 1 0 0 13 0 1317.7041 Q6P1J9;A0A3B3IRP5;A0A2R8YHB3 Q6P1J9 269 281 CDC73 Parafibromin yes no 2 0.014439 33.875 By MS/MS 1 0.44489 0.37236 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44489 0.37236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 892530 611890 280640 0 0 0 0 0 0 0 0 0 892530 611890 280640 0 0 0 0 0 0 26856 3150 28282 142740 143667 143667 1 PAPVAQPPAAAPPSAVGSSAAAPR APPASRAPQMRAAPRPAPVAQPPAAAPPSA AAPPSAVGSSAAAPRQPGLMAQMATTAAGV R P A P R Q 9 1 0 0 0 1 0 1 0 0 0 0 0 0 7 3 0 0 0 2 0 0 24 0 2137.128 Q9Y6H1;Q5T1J5 Q9Y6H1 28 51 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 2;3 5.9152E-05 47.532 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3756800 3756800 0 3756800 3756800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26857 4492 28283 142741;142742 143668;143669 143668 2 PAPVAVAAAATAAAYGGYPTAHTATDYGYTQR TAAYAPAAATVAVARPAPVAVAAAATAAAY YPTAHTATDYGYTQRQQEAPPPPPPATTQN R P A Q R Q 11 1 0 1 0 1 0 3 1 0 0 0 0 0 3 0 5 0 4 2 0 0 32 0 3153.5156 Q96KR1 Q96KR1 92 123 ZFR Zinc finger RNA-binding protein yes yes 3;4 8.9181E-52 100.95 By MS/MS By matching 2 1 0.57678 0.6122 5.9575 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57881 0.63652 7.8019 2 0 Median NaN NaN NaN 0 0 Median 0.57678 0.6122 NaN 1 0 Median NaN NaN NaN 0 0 Median 19875000 12301000 7574200 0 0 0 0 0 0 17569000 10875000 6693700 0 0 0 2306600 1426200 880490 0 0 0 26858 3697 28284 142743;142744;142745 143670;143671;143672;143673 143671 4 PAPYWEGTAVIDGEFK VADHSLHLSKAKISKPAPYWEGTAVIDGEF APYWEGTAVIDGEFKELKLTDYRGKYLVFF K P A F K E 2 0 0 1 0 0 2 2 0 1 0 1 0 1 2 0 1 1 1 1 0 0 16 0 1778.8516 Q13162;A6NG45;A6NJJ0 Q13162 84 99 PRDX4 Peroxiredoxin-4 yes no 2 0.0089349 45.077 By MS/MS 1 0.91325 0.84788 NaN 1 Median 0.91325 0.84788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5243000 2836300 2406700 5243000 2836300 2406700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26859 2793 28285 142746 143674 143674 1 PAQPQEHPFASSR MLGLTKPAMPMQQARPAQPQEHPFASSRFL ARPAQPQEHPFASSRFLQPVHKIDMNLTDL R P A S R F 2 1 0 0 0 2 1 0 1 0 0 0 0 1 3 2 0 0 0 0 0 0 13 0 1450.6953 A0A2R8YFH5;Q15437;Q5QPE2 A0A2R8YFH5 200 212 SEC23B Protein transport protein Sec23B yes no 2;3 0.0096284 41.092 By MS/MS 2 0.75726 0.6676 16.883 2 Median NaN NaN NaN 0 0 Median 0.75726 0.6676 16.883 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878300 2148500 1729800 0 0 0 3878300 2148500 1729800 0 0 0 0 0 0 0 0 0 0 0 0 26860 401 28286 142747;142748 143675;143676 143675 2 PARPVTVYSISLQK RLSTLMKRGEVVEAKPARPVTVYSISLQKF KPARPVTVYSISLQKFQPPFFTLDVECGGG K P A Q K F 1 1 0 0 0 1 0 0 0 1 1 1 0 0 2 2 1 0 1 2 0 0 14 1 1557.8879 Q8WWH5 Q8WWH5 224 237 TRUB1 Probable tRNA pseudouridine synthase 1 yes yes 3 0.00025874 59.709 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.97406 0.96833 10.958 4 Median 0.91679 0.98231 NaN 1 0 Median 1.2541 1.1708 NaN 1 0 Median 0.8402 0.95455 NaN 1 0 Median 1.0349 0.91108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14929000 7821800 7107500 9111200 4827400 4283800 405280 188190 217090 4687400 2473600 2213700 725390 332530 392860 0 0 0 0 0 0 26861 3508 28287 142749;142750;142751;142752 143677;143678;143679 143677 3 PASANISLYER WYHVLKGEKTFYLIRPASANISLYERWRSA YLIRPASANISLYERWRSASNHSEMFFADQ R P A E R W 2 1 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 0 11 0 1219.6197 O75151 O75151 273 283 PHF2 Lysine-specific demethylase PHF2 yes yes 2 0.028657 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26862 1649 28288 142753 143680 143680 1 PASGPIRPIVR RRKARQAKARRIAPRPASGPIRPIVRCPTV IAPRPASGPIRPIVRCPTVRYHTKVRAGRG R P A V R C 1 2 0 0 0 0 0 1 0 2 0 0 0 0 3 1 0 0 0 1 0 0 11 1 1161.6982 P26373;J3QSB4 P26373 50 60 RPL13 60S ribosomal protein L13 yes no 2 1.1654E-17 148.52 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 3 3 0.73744 0.74063 26.135 11 Median 0.70943 0.76103 4.9732 2 0 Median 0.61811 0.54757 34.267 2 0 Median 0.67292 0.69771 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67901 0.74063 25.296 3 0 Median 1.0433 0.88317 17.138 3 0 Median 127390000 74351000 53042000 49368000 30906000 18462000 5034800 2731600 2303200 23956000 14117000 9838800 0 0 0 40198000 22189000 18008000 8837400 4407800 4429600 26863 2144 28289 142754;142755;142756;142757;142758;142759;142760;142761;142762;142763;142764 143681;143682;143683;143684;143685 143681 4 PASPATETVPAFSER KLIGKKVNVTVDYIRPASPATETVPAFSER PASPATETVPAFSERTCATVTIGGINIAEA R P A E R T 3 1 0 0 0 0 2 0 0 0 0 0 0 1 3 2 2 0 0 1 0 0 15 0 1558.7627 Q7KZF4 Q7KZF4 424 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 3.6839E-06 89.403 By MS/MS By MS/MS 1 1 0.80339 0.68501 5.8059 2 Median NaN NaN NaN 0 0 Median 0.76913 0.65746 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83917 0.71372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5885300 3252200 2633100 0 0 0 2772600 1530600 1241900 0 0 0 3112700 1721500 1391200 0 0 0 0 0 0 26864 3214 28290 142765;142766 143686;143687 143687 2 PATEKDLAEDAPWKK ______________________________ PATEKDLAEDAPWKKIQQNTFTRWCNEHLK M P A K K I 3 0 0 2 0 0 2 0 0 0 1 3 0 0 2 0 1 1 0 0 0 0 15 2 1697.8625 Q60FE5;A0A087WWY3 Q60FE5 2 16 FLNA yes no 3;4 5.7924E-05 75.02 By MS/MS By MS/MS By matching By matching 4 2 1 1 0.76108 0.87065 11.617 8 Median 0.7889 0.89716 6.068 4 0 Median 0.77391 0.80617 18.495 2 1 Median 0.62362 0.72251 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76882 0.8247 NaN 1 0 Median NaN NaN NaN 0 0 Median 89245000 49041000 40204000 38250000 20145000 18106000 42820000 24098000 18722000 2902100 1704000 1198100 0 0 0 5272300 3094800 2177500 0 0 0 26865 3120 28291 142767;142768;142769;142770;142771;142772;142773;142774 143688;143689;143690;143691;143692;143693;143694 143692 7 PATLTTTSATSK TNSTAAKPAASITSKPATLTTTSATSKLIH TSKPATLTTTSATSKLIHPDEDISLEERRA K P A S K L 2 0 0 0 0 0 0 0 0 0 1 1 0 0 1 2 5 0 0 0 0 0 12 0 1177.619 J3QRS9;X6R4W8;O43670;J3KS31 J3QRS9 367 378 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes no 2 0.0030208 47.198 By matching By MS/MS 1 2 0.9569 0.88785 3.8844 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86854 0.89297 NaN 1 0 Median 0.99473 0.8598 4.5412 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2792700 1390500 1402200 0 0 0 0 0 0 1876800 936130 940710 915860 454330 461530 0 0 0 0 0 0 26866 1353 28292 142775;142776;142777 143695 143695 1 PATSTVTGLGLSTR HPQAVPQPDVALHARPATSTVTGLGLSTRT RPATSTVTGLGLSTRTPSVSTSESSAGAGT R P A T R T 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 2 4 0 0 1 0 0 14 0 1359.7358 F5H055;Q5T0B9 F5H055 97 110 ZNF362 Zinc finger protein 362 yes no 2 4.5699E-06 94.767 By MS/MS By MS/MS 1 1 0.69226 0.64661 66.72 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40203 0.40341 NaN 1 0 Median 1.192 1.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8445600 4167000 4278600 0 0 0 0 0 0 5101400 2758200 2343200 3344200 1408800 1935400 0 0 0 0 0 0 26867 1018 28293 142778;142779 143696;143697 143696 2 PAVEASTGGEATQETGKEEAGKEEPPPLTPPAR QPYGGSKRPLPFAPRPAVEASTGGEATQET EAGKEEPPPLTPPARCAAPGGVRKAPAPFR R P A A R C 5 1 0 0 0 1 7 4 0 0 1 2 0 0 6 1 4 0 0 1 0 0 33 2 3330.6216 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 103 135 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 4 0.00025669 26.826 By MS/MS 1 0.44214 0.5038 NaN 1 Median NaN NaN NaN 0 0 Median 0.44214 0.5038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1832500 1249000 583540 0 0 0 1832500 1249000 583540 0 0 0 0 0 0 0 0 0 0 0 0 26868 3903 28294 142780 143698 143698 1 PAVIGDVLQVYSGSEGR TTVEHLAIQCHWSQRPAVIGDVLQVYSGSE VIGDVLQVYSGSEGRAIIFCETKKNVTEMA R P A G R A 1 1 0 1 0 1 1 3 0 1 1 0 0 0 1 2 0 0 1 3 0 0 17 0 1745.8948 Q9BQ39;A0A087WVC1 Q9BQ39 375 391 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.0023456 47.288 By MS/MS 1 0.87347 0.91966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87347 0.91966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1435100 765830 669310 0 0 0 0 0 0 1435100 765830 669310 0 0 0 0 0 0 0 0 0 26869 3781 28295 142781 143699 143699 1 PAVPTVASSTDMLHSK TKQDDRPPLTSLLSKPAVPTVASSTDMLHS AVPTVASSTDMLHSKLSQLRESREQHQHSD K P A S K L 2 0 0 1 0 0 0 0 1 0 1 1 1 0 2 3 2 0 0 2 0 0 16 0 1639.824 Q14008 Q14008 1966 1981 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 9.6233E-11 112.5 By matching By MS/MS By MS/MS 1 1 3 0.91218 0.91685 89.039 5 Median NaN NaN NaN 0 0 Median 1.1005 0.95018 NaN 1 0 Median 0.91218 1.0058 NaN 1 0 Median 0.76378 0.68861 108.35 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25951000 14824000 11128000 0 0 0 1425900 573170 852720 15052000 7840900 7210800 9473900 6409800 3064100 0 0 0 0 0 0 26870 2850 28296;28297 142782;142783;142784;142785;142786 143700;143701;143702 143700 1535 3 PAVVMQGSAR WMIVTVLPVPPLSVRPAVVMQGSARNQDDL PLSVRPAVVMQGSARNQDDLTHKLADIVKI R P A A R N 2 1 0 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 10 0 1014.528 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 262 271 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0013065 66.692 By MS/MS By matching 1 1 0.80028 0.75118 31.897 2 Median NaN NaN NaN 0 0 Median 1.1119 0.94124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57598 0.5995 NaN 1 0 Median NaN NaN NaN 0 0 Median 3823600 1942000 1881500 0 0 0 2763000 1193100 1569800 0 0 0 0 0 0 1060600 748910 311670 0 0 0 26871 486 28298 142787;142788 143703;143704 143703 2 PAYFQRPENALK ______________________________ ______________________________ M P A L K R 2 1 1 0 0 1 1 0 0 0 1 1 0 1 2 0 0 0 1 0 0 0 12 1 1432.7463 Q14152 Q14152 2 13 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 2.0213E-05 112.83 By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 0.86765 0.82671 22.704 9 Median 0.78323 0.78285 26.064 3 1 Median 1.0057 0.94139 19.505 4 1 Median NaN NaN NaN 0 0 Median 0.85635 0.82671 NaN 1 0 Median 1.2018 1.3641 NaN 1 0 Median NaN NaN NaN 0 0 Median 61646000 33127000 28519000 31841000 17661000 14181000 25423000 13295000 12128000 0 0 0 2677600 1362100 1315600 1703600 808190 895420 0 0 0 26872 2860 28299 142789;142790;142791;142792;142793;142794;142795;142796;142797 143705;143706;143707;143708;143709;143710;143711;143712;143713 143707 9 PAYFQRPENALKR ______________________________ ______________________________ M P A K R A 2 2 1 0 0 1 1 0 0 0 1 1 0 1 2 0 0 0 1 0 0 0 13 2 1588.8474 Q14152 Q14152 2 14 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3;4 2.1307E-05 99.732 By MS/MS 3 0.75529 0.79177 26.769 2 Median 0.75529 0.79177 26.769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49653000 21530000 28123000 49653000 21530000 28123000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26873 2860 28300 142798;142799;142800 143714;143715;143716 143716 3 PAYHSSLMDPDTK ______________________________ ______________________________ M P A T K L 1 0 0 2 0 0 0 0 1 0 1 1 1 0 2 2 1 0 1 0 0 0 13 0 1460.6606 O15145;C9JZD1 O15145 2 14 ARPC3 Actin-related protein 2/3 complex subunit 3 yes no 2;3 4.1216E-05 83.137 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 0.74608 0.69632 15.001 9 Median 0.72683 0.68687 9.6567 4 0 Median 0.84415 0.72291 33.17 2 0 Median 0.81335 0.77028 14.445 2 1 Median 0.84062 0.69632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37343000 20190000 17153000 18750000 10681000 8069200 5357700 2658300 2699500 10118000 5303600 4814900 3116500 1547200 1569400 0 0 0 0 0 0 26874 1527 28301 142801;142802;142803;142804;142805;142806;142807;142808;142809 143717;143718;143719;143720;143721;143722;143723;143724;143725;143726;143727;143728;143729 143717 13 PEADGDSEYGEEPILHADLGSCNGASVSQKGSLSPARSATPK LKYHQAHAHTDDDSKPEADGDSEYGEEPIL SQKGSLSPARSATPKVRLVEPHSPSPSSKF K P E P K V 5 1 1 3 1 1 4 5 1 1 3 2 0 0 4 7 1 0 1 1 0 0 42 2 4283.9877 O15014 O15014 527 568 ZNF609 Zinc finger protein 609 yes yes 5 0.063937 1.0387 By MS/MS 1 1.617 1.9884 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.617 1.9884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2977900 446990 2530900 0 0 0 0 0 0 2977900 446990 2530900 0 0 0 0 0 0 0 0 0 26875 1511 28302 142810 143730 143730 1 PEAQVQLQQLR LQSLSQRLQREFVPKPEAQVQLQQLRQSVG FVPKPEAQVQLQQLRQSVGLLTNELAMEKE K P E L R Q 1 1 0 0 0 4 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1308.715 Q8N283 Q8N283 660 670 ANKRD35 Ankyrin repeat domain-containing protein 35 yes yes 2 0.02602 50.878 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2385700 0 2385700 0 0 0 0 0 0 2385700 0 2385700 0 0 0 0 0 0 0 0 0 26876 3361 28303 142811 143731 143731 1 PEEGRPVVSGTGNDITTPPNK EQERHKQLKSAGIARPEEGRPVVSGTGNDI VVSGTGNDITTPPNKELPPSPEKKTKPLAT R P E N K E 0 1 2 1 0 0 2 3 0 1 0 1 0 0 4 1 3 0 0 2 0 0 21 1 2164.076 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 1816 1836 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 2.68E-09 59.512 By MS/MS 2 0.58688 0.56529 20.279 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58688 0.56529 20.279 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3708800 2150600 1558200 0 0 0 0 0 0 0 0 0 3708800 2150600 1558200 0 0 0 0 0 0 26877 895 28304 142812;142813 143732;143733;143734;143735 143734 4 PEFLEDPSVLTK ______________________________ ______________________________ M P E T K D 0 0 0 1 0 0 2 0 0 0 2 1 0 1 2 1 1 0 0 1 0 0 12 0 1373.7078 P42166;P42167;G5E972 P42166 2 13 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 3.2888E-06 113.63 By MS/MS By MS/MS By MS/MS By matching 6 4 3 3 0.74095 0.66831 21.179 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68273 0.66831 8.9058 6 2 Median 0.98735 0.83801 12.787 4 0 Median 0.66398 0.63477 16.719 3 0 Plateau 0.80697 0.67193 32.493 3 0 Median 190310000 110580000 79731000 0 0 0 0 0 0 140900000 81863000 59033000 7928300 4066900 3861500 40308000 23991000 16317000 1175600 655990 519620 26878 2306;2307 28305;28306 142814;142815;142816;142817;142818;142819;142820;142821;142822;142823;142824;142825;142826;142827;142828;142829 143736;143737;143738;143739;143740;143741;143742;143743;143744;143745;143746;143747;143748;143749;143750;143751;143752;143753 143736 18 PEILSFFSTNLQR LLEVLSDIDEMSRRRPEILSFFSTNLQRLM RRPEILSFFSTNLQRLMSSAEECCRNLAFS R P E Q R L 0 1 1 0 0 1 1 0 0 1 2 0 0 2 1 2 1 0 0 0 0 0 13 0 1550.8093 Q8N201;H7C582 Q8N201 2078 2090 INTS1 Integrator complex subunit 1 yes no 2 0.038315 26.119 By MS/MS By matching 1 1 0.72743 0.71308 16.097 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73492 0.79905 NaN 1 0 Median 0.72002 0.63637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9031700 4709100 4322600 0 0 0 0 0 0 8239800 4286100 3953800 791850 423050 368800 0 0 0 0 0 0 26879 3360 28307 142830;142831 143754 143754 1 PEIPTEQSR GAILSLPKALLDPRRPEIPTEQSREENLIP LLDPRRPEIPTEQSREENLIPYSPDVQIHA R P E S R E 0 1 0 0 0 1 2 0 0 1 0 0 0 0 2 1 1 0 0 0 0 0 9 0 1055.5247 Q8N766;H7C4E3 Q8N766 883 891 EMC1 ER membrane protein complex subunit 1 yes no 2 0.035824 34.808 By MS/MS By matching By matching 2 1 1 1.223 1.1755 5.8523 4 Median 1.223 1.1855 3.0265 2 0 Median NaN NaN NaN 0 0 Median 1.1749 1.1908 NaN 1 0 Median 1.3496 1.0619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49915000 22081000 27835000 37672000 16384000 21287000 0 0 0 9148300 4334000 4814400 3095500 1362400 1733000 0 0 0 0 0 0 26880 3392 28308 142832;142833;142834;142835 143755;143756 143755 2 PFFHSLSEK VDFSATWCGPCKMIKPFFHSLSEKYSNVIF PCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ K P F E K Y 0 0 0 0 0 0 1 0 1 0 1 1 0 2 1 2 0 0 0 0 0 0 9 0 1090.5447 P10599 P10599 40 48 TXN Thioredoxin yes yes 2 0.00042498 129.65 By MS/MS By matching By matching 1 1 1 1.2447 1.022 53.22 3 Plateau NaN NaN NaN 0 0 Median 1.2447 1.022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.07 1.2136 NaN 1 0 Median 0.51685 0.4484 NaN 1 0 Median 40969000 16294000 24675000 0 0 0 36040000 13619000 22421000 0 0 0 0 0 0 2484500 1335200 1149400 2444700 1340300 1104400 26881 1942 28309 142836;142837;142838 143757;143758 143757 2 PFGSEEQLLPVEK RKGYEEVHVPALKPKPFGSEEQLLPVEKLP PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K P F E K L 0 0 0 0 0 1 3 1 0 0 2 1 0 1 2 1 0 0 0 1 0 0 13 0 1471.7559 O75643;A0A494C1A5 O75643 454 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 3.8991E-05 90.685 By MS/MS By matching 1 1 0.81447 0.81366 4.6402 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71308 0.78739 NaN 1 0 Median 0.93028 0.8408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13478000 7621900 5856200 0 0 0 0 0 0 10601000 6260800 4339700 2877500 1361000 1516500 0 0 0 0 0 0 26882 1688 28310 142839;142840 143759;143760 143759 2 PFLELDTNLPANR ______________________________ ______________________________ M P F N R V 1 1 2 1 0 0 1 0 0 0 3 0 0 1 2 0 1 0 0 0 0 0 13 0 1498.778 P30046;B5MC82;A6NHG4 P30046 2 14 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2 8.676E-07 101.32 By MS/MS By MS/MS 3 2 0.83132 0.74757 24.826 4 Median 0.62627 0.61052 37.481 2 1 Median 0.88457 0.74757 5.829 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9038400 5142100 3896300 5477600 3369200 2108400 3560800 1772900 1787800 0 0 0 0 0 0 0 0 0 0 0 0 26883 2182 28311;28312 142841;142842;142843;142844;142845 143761;143762;143763;143764;143765;143766 143765 6 PFLNGLTGKPVMVK ______________________________ KPFLNGLTGKPVMVKLKWGMEYKGYLVSVD K P F V K L 0 0 1 0 0 0 0 2 0 0 2 2 1 1 2 0 1 0 0 2 0 0 14 1 1499.8534 P62306;A0A0B4J254;F8W0W6 P62306 9 22 SNRPF Small nuclear ribonucleoprotein F yes no 3 0.070942 19.323 By MS/MS 1 0.21983 0.20587 NaN 1 Median 0.21983 0.20587 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12235000 10214000 2021300 12235000 10214000 2021300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26884 2582 28313 142846 143767 143767 1 PFLWLAR QYYDISAKSNYNFEKPFLWLARKLIGDPNL KSNYNFEKPFLWLARKLIGDPNLEFVAMPA K P F A R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 7 0 901.51741 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 177 183 RAN GTP-binding nuclear protein Ran yes no 2 0.01617 69.39 By matching By MS/MS By matching 1 1 1 1.0824 1.0336 15.142 3 Median 1.1789 1.1087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0824 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0056 0.82943 NaN 1 0 Median 5251900 2528900 2723000 1216100 579090 636990 0 0 0 3801000 1843000 1958000 0 0 0 0 0 0 234840 106800 128040 26885 623 28314 142847;142848;142849 143768 143768 1 PFSNSHNALK ______________________________ ______________________________ M P F L K L 1 0 2 0 0 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 0 10 0 1113.5567 P12277;G3V4N7;G3V2I1 P12277 2 11 CKB Creatine kinase B-type yes no 2 0.026204 35.295 By matching By MS/MS 1 1 0.84902 0.74363 17.5 2 Median 0.7328 0.65708 NaN 1 0 Median 0.98368 0.84158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5435300 2568800 2866600 52286 30508 21778 5383000 2538300 2844800 0 0 0 0 0 0 0 0 0 0 0 0 26886 1980 28315 142850;142851 143769;143770 143769 2 PGAAMVEMADGYAVDR CLYGNVEKVKFMKSKPGAAMVEMADGYAVD GAAMVEMADGYAVDRAITHLNNNFMFGQKL K P G D R A 4 1 0 2 0 0 1 2 0 0 0 0 2 0 1 0 0 0 1 2 0 0 16 0 1651.7334 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0 P14866 419 434 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 1.4611E-09 133.07 By MS/MS 1 0.80792 0.81131 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80792 0.81131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10355000 5947800 4407700 0 0 0 0 0 0 10355000 5947800 4407700 0 0 0 0 0 0 0 0 0 26887 2011;436;1419 28316 142852 143771;143772 143771 2 PGALAEGAAEPEPQR RLGPASAADTGSEAKPGALAEGAAEPEPQR PGALAEGAAEPEPQRHAGRIAFTDADDVAI K P G Q R H 4 1 0 0 0 1 3 2 0 0 1 0 0 0 3 0 0 0 0 0 0 0 15 0 1491.7318 Q9NYB0;A0A590UJT3 Q9NYB0 115 129 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 2 2.7163E-07 93.058 By MS/MS By MS/MS 1 1 0.47382 0.44977 30.952 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34595 0.36136 NaN 1 1 Median 0.64895 0.55981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2171800 1262600 909290 0 0 0 0 0 0 780880 613990 166880 1391000 648570 742410 0 0 0 0 0 0 26888 4174 28317 142853;142854 143773;143774 143774 2 PGAPLRPK SVMTYLSQFPKAKLKPGAPLRPKLNPKKAR FPKAKLKPGAPLRPKLNPKKARAYGPGIEP K P G P K L 1 1 0 0 0 0 0 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 8 1 834.50757 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 271 278 FLNA Filamin-A no no 2 0.015383 99.919 By matching By MS/MS By matching By matching 1 2 1 1 0.78409 0.79527 57.568 5 Median 0.78409 0.79527 NaN 1 0 Median 0.42112 0.41675 85.113 2 0 Median 0.82582 0.87884 NaN 1 0 Median 0.8869 0.8575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3223600 1975800 1247800 214760 117420 97333 1500900 1064300 436660 1161300 612230 549110 346530 181840 164690 0 0 0 0 0 0 26889 2088;3120 28318 142855;142856;142857;142858;142859 143775;143776 143776 2 PGFSIADK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI FYVVLGRPGFSIADKKRRTGCIGAKHRISK R P G D K K 1 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 833.42832 P62913;Q5VVC8 P62913 137 144 RPL11 60S ribosomal protein L11 yes no 2 0.0039199 84.568 By MS/MS By MS/MS By MS/MS 1 1 2 0.94854 0.8299 6.6809 4 Median 0.87507 0.81601 NaN 1 0 Median 0.89727 0.77216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0704 0.87443 5.0021 2 0 Median 15461000 8019100 7441500 10037000 5181300 4855500 2801700 1512100 1289600 0 0 0 0 0 0 0 0 0 2622100 1325700 1296400 26890 2609 28319 142860;142861;142862;142863 143777;143778;143779 143778 3 PGGDATVTISHR MPIAMLLHTDGAHERPGGDATVTISHRYTP HERPGGDATVTISHRYTPKEQLKKHTILAD R P G H R Y 1 1 0 1 0 0 0 2 1 1 0 0 0 0 1 1 2 0 0 1 0 0 12 0 1209.6102 P13995;B8ZZU9 P13995 222 233 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 3 0.029814 27.681 By MS/MS By MS/MS 1 1 1.2761 1.1514 18.335 2 Median NaN NaN NaN 0 0 Median 1.5406 1.3108 NaN 1 1 Median 1.0571 1.0114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1805200 808190 996990 0 0 0 821690 328700 492990 983490 479490 504000 0 0 0 0 0 0 0 0 0 26891 2000 28320 142864;142865 143780;143781 143780 2 PGGDTIFGK ______________________________ KAQVARPGGDTIFGKIIRKEIPAKIIFEDD R P G G K I 0 0 0 1 0 0 0 3 0 1 0 1 0 1 1 0 1 0 0 0 0 0 9 0 890.44978 P49773;D6RC06;D6REP8;D6RE99;D6RD60 P49773 13 21 HINT1 Histidine triad nucleotide-binding protein 1 yes no 2 0.00053085 117.1 By MS/MS By MS/MS By matching 1 1 1 0.94533 0.84335 15.537 3 Median 0.9308 0.84335 NaN 1 0 Median 0.94533 0.77653 NaN 1 0 Median 1.0528 1.049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53970000 26696000 27274000 22447000 11529000 10918000 29489000 14162000 15327000 2034100 1005400 1028700 0 0 0 0 0 0 0 0 0 26892 2399 28321 142866;142867;142868 143782;143783;143784;143785 143784 4 PGGGPGLSTPGGHPKPPHR GPGGPKGGKMPGGPKPGGGPGLSTPGGHPK PGLSTPGGHPKPPHRGGGEPRGGRQHHPPY K P G H R G 0 1 0 0 0 0 0 6 2 0 1 1 0 0 6 1 1 0 0 0 0 0 19 1 1801.9336 P23246 P23246 218 236 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3;4 2.7294E-08 76.82 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 4 4 1 0.4841 0.46173 64.258 12 Median 0.20386 0.19883 172.51 2 0 Median 0.52462 0.52639 NaN 1 0 Median 0.39305 0.43944 12.178 4 1 Linear 0.54667 0.50621 10.433 4 0 Median 0.59687 0.66543 NaN 1 0 Median NaN NaN NaN 0 0 Median 38505000 26725000 11780000 2270100 2003600 266550 1009100 699800 309290 16783000 12349000 4434200 16199000 10278000 5921000 2243200 1394100 849070 0 0 0 26893 2107 28322 142869;142870;142871;142872;142873;142874;142875;142876;142877;142878;142879;142880 143786;143787;143788;143789;143790;143791;143792;143793;143794;143795;143796;143797;143798;143799;143800 143796 15 PGGLLLGDVAPNFEANTTVGR ______________________________ GDVAPNFEANTTVGRIRFHDFLGDSWGILF M P G G R I 2 1 2 1 0 0 1 4 0 0 3 0 0 1 2 0 2 0 0 2 0 0 21 0 2097.0855 P30041 P30041 2 22 PRDX6 Peroxiredoxin-6 yes yes 2;3 4.329E-25 135.02 By MS/MS By matching 3 1 0.77205 0.73355 21.162 4 Median 0.7908 0.75102 7.4863 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49682 0.50966 NaN 1 0 Median NaN NaN NaN 0 0 Median 55812000 29761000 26051000 54785000 29052000 25733000 0 0 0 0 0 0 0 0 0 1027000 709430 317540 0 0 0 26894 2179 28323;28324 142881;142882;142883;142884 143801;143802;143803;143804;143805;143806 143802 6 PGGYGYGYGR GGDQGYGSGRYYDSRPGGYGYGYGRSRDYN YYDSRPGGYGYGYGRSRDYNGRNQGGYDRY R P G G R S 0 1 0 0 0 0 0 5 0 0 0 0 0 0 1 0 0 0 3 0 0 0 10 0 1045.4617 P98179 P98179 122 131 RBM3 RNA-binding protein 3 yes yes 2 0.00047247 74.127 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1857 1.1396 13.72 3 Median NaN NaN NaN 0 0 Median 1.4754 1.2248 NaN 1 0 Median 1.1237 1.1396 NaN 1 0 Median 1.1857 0.93937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7116500 3127000 3989400 0 0 0 2089600 850110 1239500 4466000 1989000 2477000 560900 287930 272970 0 0 0 0 0 0 26895 2672 28325 142885;142886;142887;142888 143807;143808;143809;143810 143807 4 PGHLQEGFGCVVTNR ______________________________ PGHLQEGFGCVVTNRFDQLFDDESDPFEVL M P G N R F 0 1 1 0 1 1 1 3 1 0 1 0 0 1 1 0 1 0 0 2 0 0 15 0 1669.7995 Q8NC51 Q8NC51 2 16 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.015347 22.475 By MS/MS 1 0.51052 0.43183 NaN 1 Median NaN NaN NaN 0 0 Median 0.51052 0.43183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930400 3033400 2896900 0 0 0 5930400 3033400 2896900 0 0 0 0 0 0 0 0 0 0 0 0 26896 3414 28326 142889 143811 143811 1 PGLEGYALPR QCRSCRNTLTNIAMRPGLEGYALPRKCNTD NIAMRPGLEGYALPRKCNTDQAGRPKCPLD R P G P R K 1 1 0 0 0 0 1 2 0 0 2 0 0 0 2 0 0 0 1 0 0 0 10 0 1071.5713 P33992;B1AHB1;B1AHA9;B1AHB2 P33992 186 195 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.00037046 81.548 By matching By MS/MS By MS/MS By matching By matching By matching 1 3 3 1 1 2 1.0073 0.8903 28.529 11 Median 1.1461 1.064 NaN 1 0 Median 1.0073 0.8903 43.78 3 0 Median 1.2419 1.1992 29.321 3 0 Plateau 0.9877 0.84265 NaN 1 0 Median 1.4193 1.3576 NaN 1 0 Median 1.0503 0.84615 16.936 2 0 Median 140840000 63467000 77369000 11300000 5173900 6126300 16755000 8302200 8453000 55774000 26402000 29372000 572950 313950 259000 42068000 16720000 25348000 14365000 6555200 7809900 26897 2224 28327 142890;142891;142892;142893;142894;142895;142896;142897;142898;142899;142900 143812;143813 143812 2 PGLGGSSGLAGAWLK VKEWLLAHEGHRLGKPGLGGSSGLAGAWLK PGLGGSSGLAGAWLKGAGATSGSPPAGRN_ K P G L K G 2 0 0 0 0 0 0 5 0 0 3 1 0 0 1 2 0 1 0 0 0 0 15 0 1369.7354 B4DEE8;P16455 B4DEE8 210 224 MGMT Methylated-DNA--protein-cysteine methyltransferase yes no 2 0.0011583 42.395 By MS/MS By matching 1 1 1.0875 0.9474 65.742 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63069 0.59518 NaN 1 0 Median 1.8752 1.5081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5481100 3081400 2399700 0 0 0 0 0 0 5359500 3027700 2331800 121650 53725 67930 0 0 0 0 0 0 26898 589 28328 142901;142902 143814;143815 143815 2 PGLVPIEK P G E K 0 0 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 8 0 851.51165 REV__A0A0A0MRA3 yes no 2 0.020098 46.663 By matching By MS/MS 1 3 1.0737 0.92577 58.527 4 Median 0.87963 0.79581 NaN 1 0 Median 1.3105 1.0769 71.366 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77993000 36828000 41166000 28386000 15675000 12711000 49607000 21153000 28454000 0 0 0 0 0 0 0 0 0 0 0 0 + 26899 4507 28329 142903;142904;142905;142906 143816 143816 1 PGPALWPLPLSVK VQVAEAARAPSVSAKPGPALWPLPLSVKMT AKPGPALWPLPLSVKMTPNLLHLAPENFYI K P G V K M 1 0 0 0 0 0 0 1 0 0 3 1 0 0 4 1 0 1 0 1 0 0 13 0 1373.8071 P07686 P07686 52 64 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 2 0.011894 35.224 By matching By MS/MS By matching 1 2 1 0.71121 0.62169 10.595 4 Median 0.62687 0.58899 NaN 1 0 Median 0.72131 0.62169 3.4834 2 0 Median 0.73991 0.74707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3606700 2082900 1523800 1022700 630470 392210 2062000 1205600 856380 522050 246830 275220 0 0 0 0 0 0 0 0 0 26900 1888 28330 142907;142908;142909;142910 143817 143817 1 PGPGLSSQTAGAAGWR AGFLKTVGLFAGRGRPGPGLSSQTAGAAGW GPGLSSQTAGAAGWRRSGSNGGGQAPGASP R P G W R R 3 1 0 0 0 1 0 4 0 0 1 0 0 0 2 2 1 1 0 0 0 0 16 0 1511.7481 P38432 P38432 353 368 COIL Coilin yes yes 2 5.6963E-27 196.88 By MS/MS By matching By MS/MS 2 1 4 0.9013 0.92926 32.088 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6372 0.64512 6.8767 2 0 Median 1.3821 1.2026 NaN 1 0 Median 0.99505 1.0465 28.463 4 0 Median NaN NaN NaN 0 0 Median 41601000 21959000 19642000 0 0 0 0 0 0 21080000 12568000 8512300 645490 321490 324000 19875000 9069900 10805000 0 0 0 26901 2274 28331 142911;142912;142913;142914;142915;142916;142917 143818;143819;143820;143821;143822;143823;143824;143825 143818 8 PGPGVWDPNWDR EPRPAEPPAWAGGARPGPGVWDPNWDRREP GARPGPGVWDPNWDRREPLSLINVRKRNVE R P G D R R 0 1 1 2 0 0 0 2 0 0 0 0 0 0 3 0 0 2 0 1 0 0 12 0 1394.6367 Q96HS1 Q96HS1 53 64 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0011423 56.563 By matching By matching By MS/MS 1 1 1 0.81353 0.74418 20.457 2 Median NaN NaN NaN 0 0 Median 1.0159 0.86 NaN 1 0 Median 0.65149 0.64395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5653700 3463400 2190300 606910 388370 218540 1343500 640950 702540 3703300 2434100 1269200 0 0 0 0 0 0 0 0 0 26902 3669 28332 142918;142919;142920 143826;143827 143827 2 PGPPTTANHLGLSVPGLVSVPPR SAGPMPSAGPVPSARPGPPTTANHLGLSVP HLGLSVPGLVSVPPRLLPGPENHRAGSNED R P G P R L 1 1 1 0 0 0 0 3 1 0 3 0 0 0 6 2 2 0 0 3 0 0 23 0 2262.2485 Q8IZL8;C9JFV4 Q8IZL8 700 722 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 3 4.7424E-08 47.392 By MS/MS By matching By matching 1 1 2 0.44734 0.47244 21.39 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28925 0.3182 NaN 1 0 Median 0.576 0.51001 NaN 1 0 Median 0.44734 0.47244 2.4304 2 0 Median NaN NaN NaN 0 0 Median 6780600 5082100 1698500 0 0 0 0 0 0 4178900 3300600 878290 169410 119950 49458 2432300 1661500 770770 0 0 0 26903 3351 28333 142921;142922;142923;142924 143828 143828 1 PGPTPSGTNVGSSGR ______________________________ PGPTPSGTNVGSSGRSPSKAVAARAAGSTV M P G G R S 0 1 1 0 0 0 0 4 0 0 0 0 0 0 3 3 2 0 0 1 0 0 15 0 1369.6586 P60468 P60468 2 16 SEC61B Protein transport protein Sec61 subunit beta yes yes 2 0.00032045 55.401 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 2 1 0.70853 0.64002 12.095 6 Median 0.6757 0.65822 NaN 1 0 Median 0.76247 0.64655 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80131 0.63356 NaN 1 0 Median 0.58701 0.61153 24.627 2 0 Median 0.73727 0.57251 NaN 1 0 Median 11584000 6296900 5286700 5424700 3179900 2244800 4736800 2375400 2361400 0 0 0 648530 326460 322070 646650 346480 300170 126940 68697 58239 26904 2525 28334 142925;142926;142927;142928;142929;142930 143829;143830;143831;143832;143833 143831 5 PGPYDRPGTAR RSYSDPPLKFMSVQRPGPYDRPGTARRYIG SVQRPGPYDRPGTARRYIGIVKQAGLERMR R P G A R R 1 2 0 1 0 0 0 2 0 0 0 0 0 0 3 0 1 0 1 0 0 0 11 1 1185.5891 P52597 P52597 207 217 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3 0.045314 29.936 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1168600 0 1168600 0 0 0 569010 0 569010 599610 0 599610 0 0 0 0 0 0 0 0 0 26905 2452 28335 142931;142932 143834;143835 143835 2 PGQDIRPIGHDIK DGTEELEVRILVQARPGQDIRPIGHDIKRG ARPGQDIRPIGHDIKRGECVLAKGTHMGPS R P G I K R 0 1 0 2 0 1 0 2 1 3 0 1 0 0 2 0 0 0 0 0 0 0 13 1 1444.7787 F5H039;Q9NQX3 F5H039 499 511 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase yes no 3 0.0083606 27.672 By MS/MS 1 0.5352 0.53549 NaN 1 Median NaN NaN NaN 0 0 Median 0.5352 0.53549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1884700 1204900 679760 0 0 0 1884700 1204900 679760 0 0 0 0 0 0 0 0 0 0 0 0 26906 1017 28336 142933 143836 143836 1 PGQFIHTNWTGHGGTVSSSSYNA QRDYFGAHTYELLAKPGQFIHTNWTGHGGT WTGHGGTVSSSSYNA_______________ K P G N A - 1 0 2 0 0 1 0 4 2 1 0 0 0 1 1 4 3 1 1 1 0 0 23 0 2404.0832 P52209 P52209 461 483 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 3 1.7728E-08 62.19 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19298000 0 0 0 0 0 0 0 0 19298000 0 0 0 0 0 0 0 0 0 0 0 26907 2447 28337 142934 143837 143837 1 PGSGFTNTMR FFKKGDVVIVLTGWRPGSGFTNTMRVVPVP LTGWRPGSGFTNTMRVVPVP__________ R P G M R V 0 1 1 0 0 0 0 2 0 0 0 0 1 1 1 1 2 0 0 0 0 0 10 0 1066.4866 P14618;B4DNK4 P14618 517 526 PKM Pyruvate kinase PKM;Pyruvate kinase no no 2 1.4113E-05 150.36 By matching By MS/MS 2 2 1.0872 0.9942 11.589 4 Median 1.1442 1.0965 0.012138 2 0 Median 1.0491 0.89718 0.68142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43455000 20785000 22670000 4549100 2013100 2536000 38906000 18772000 20134000 0 0 0 0 0 0 0 0 0 0 0 0 26908 2005 28338 142935;142936;142937;142938 143838;143839 143839 2 PGSVAYVSR TGGMLDNILASKLYRPGSVAYVSRSGGMSN ASKLYRPGSVAYVSRSGGMSNELNNIISRT R P G S R S 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 2 0 0 9 0 934.48723 P53396 P53396 654 662 ACLY ATP-citrate synthase yes yes 2 0.0030194 67.993 By MS/MS 1 0.78631 0.67456 NaN 1 Median NaN NaN NaN 0 0 Median 0.78631 0.67456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1952900 847450 1105400 0 0 0 1952900 847450 1105400 0 0 0 0 0 0 0 0 0 0 0 0 26909 2467 28339 142939 143840;143841 143840 2 PGTMIEWGNYWARAIR RSGPNIYELRSYQLRPGTMIEWGNYWARAI GTMIEWGNYWARAIRFRQDGNEAVGGFFSQ R P G I R F 2 2 1 0 0 0 1 2 0 2 0 0 1 0 1 0 1 2 1 0 0 0 16 1 1919.9465 O75323;C9K068 O75323 196 211 GBAS Protein NipSnap homolog 2 yes no 3 0.063363 10.658 By MS/MS 1 0.8434 0.97453 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8434 0.97453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6311300 3138000 3173300 0 0 0 0 0 0 6311300 3138000 3173300 0 0 0 0 0 0 0 0 0 26910 1658 28340 142940 143842 143842 1 PGTNSTGPAPMAPPR WTKSAEAFGKIVAERPGTNSTGPAPMAPPR PGTNSTGPAPMAPPRAPGPLSKQGSGSSQP R P G P R A 2 1 1 0 0 0 0 2 0 0 0 0 1 0 5 1 2 0 0 0 0 0 15 0 1449.7034 Q13263;M0R0K9 Q13263 413 427 TRIM28 Transcription intermediary factor 1-beta yes no 2 0.034249 24.853 By MS/MS 1 0.46539 0.41943 NaN 1 Median NaN NaN NaN 0 0 Median 0.46539 0.41943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 986050 588070 397980 0 0 0 986050 588070 397980 0 0 0 0 0 0 0 0 0 0 0 0 26911 2802 28341 142941 143843 143843 1 PGTYVIYVR ENEDGTYDIFYTAAKPGTYVIYVRFGGVDI FYTAAKPGTYVIYVRFGGVDIPNSPFTVMA K P G V R F 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 2 2 0 0 9 0 1066.5811 O75369;E7EN95 O75369 1681 1689 FLNB Filamin-B yes no 2 0.00047799 122.13 By MS/MS By MS/MS By matching 2 3 2 0.99326 0.84734 22.51 7 Median 0.91352 0.88542 35.975 2 1 Median 1.0598 0.84734 2.5177 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86018 0.77965 39.635 2 0 Median 52499000 26234000 26265000 13332000 6724600 6607600 38827000 19333000 19494000 0 0 0 0 0 0 0 0 0 339940 176980 162960 26912 1664 28342 142942;142943;142944;142945;142946;142947;142948 143844;143845;143846;143847;143848;143849 143846 6 PGVQCIPQR GPGPGPGPGPGPGPRPGVQCIPQRAALLKS PGPGPRPGVQCIPQRAALLKSMLNFLKKAI R P G Q R A 0 1 0 0 1 2 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 9 0 1053.5389 A0A087X1S3 A0A087X1S3 177 185 HUWE1 yes yes 2 0.00045597 125.25 By MS/MS 1 1.1997 1.0171 NaN 1 Median NaN NaN NaN 0 0 Median 1.1997 1.0171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3971400 2444800 1526700 0 0 0 3971400 2444800 1526700 0 0 0 0 0 0 0 0 0 0 0 0 26913 123 28343 142949 143850;143851 143850 2 PGVTVKDVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP M P G V R A 0 1 1 1 0 2 1 1 0 0 0 1 0 1 1 0 1 0 0 4 0 0 15 1 1714.9002 P39019;M0R2L9;M0QYF7;M0R140 P39019 2 16 RPS19 40S ribosomal protein S19 yes no 2;3 2.1335E-27 202.13 By MS/MS By MS/MS By MS/MS 2 1 1 0.96387 0.94271 19.749 4 Median 0.9586 0.94271 5.2635 2 0 Median 0.9306 0.82105 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4693 1.3006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52816000 27393000 25423000 49384000 25670000 23714000 2137800 1142000 995780 0 0 0 1294100 580420 713710 0 0 0 0 0 0 26914 2280 28344 142950;142951;142952;142953 143852;143853;143854;143855;143856;143857;143858 143853 7 PGYAAIQALLSSR LLQDLKAGLLPSGPRPGYAAIQALLSSRGV PRPGYAAIQALLSSRGVRPVSFSDWEKLDA R P G S R G 3 1 0 0 0 1 0 1 0 1 2 0 0 0 1 2 0 0 1 0 0 0 13 0 1345.7354 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 436 448 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 4.8234E-07 107.83 By matching By matching By MS/MS By matching By matching 2 2 2 1 1 1.4253 1.2413 27.925 8 Median 1.3496 1.3584 41.266 2 0 Median 1.4393 1.2413 3.5986 2 0 Median 0.79976 0.84064 19.147 2 0 Median 1.6788 1.4957 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4573 1.2808 NaN 1 0 Median 13327000 6893600 6433500 2541500 1117100 1424400 3634500 1795200 1839200 6634900 3765100 2869900 92316 38308 54008 0 0 0 423850 177850 246000 26915 2102 28345 142954;142955;142956;142957;142958;142959;142960;142961 143859;143860 143859 2 PHEAILR P H L R 1 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 7 0 834.47119 REV__E9PHM6 yes no 2 0.026081 53.522 By MS/MS 1 0.81595 0.86338 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81595 0.86338 NaN 1 0 Median NaN NaN NaN 0 0 Median 4743300 2394400 2349000 0 0 0 0 0 0 0 0 0 0 0 0 4743300 2394400 2349000 0 0 0 + 26916 4518 28346 142962 143861 143861 1 PHSVSLNDTETR AVPLNASKQDGPMPKPHSVSLNDTETRKLM MPKPHSVSLNDTETRKLMEECKRLQGEMMK K P H T R K 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 2 2 0 0 1 0 0 12 0 1354.6477 Q9P0L0 Q9P0L0 162 173 VAPA Vesicle-associated membrane protein-associated protein A yes yes 3 0.001141 59.57 By MS/MS By MS/MS 1 1 1.0869 0.9136 6.7136 2 Median NaN NaN NaN 0 0 Median 1.0338 0.87125 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1427 0.95802 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2794600 1169600 1625000 0 0 0 1894900 761480 1133400 0 0 0 899760 408150 491610 0 0 0 0 0 0 26917 4205 28347 142963;142964 143862;143863 143862 2 PHYGSVLDNER ______________________________ GVARPHYGSVLDNERLTAEEMDERRRQNVA R P H E R L 0 1 1 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1285.6051 P46940;A0A0J9YXZ5;H0YLE8;A0A087X225 P46940 15 25 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 8.237E-05 72.434 By MS/MS By MS/MS By matching 1 3 1 1.0127 0.88129 20.245 5 Median 1.0252 1.0255 NaN 1 1 Median 0.92296 0.7874 11.993 3 0 Median NaN NaN NaN 0 0 Median 1.3166 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13011000 6480500 6530900 841280 405210 436060 11717000 5895400 5822100 0 0 0 452610 179920 272690 0 0 0 0 0 0 26918 2350 28348 142965;142966;142967;142968;142969 143864;143865;143866;143867;143868 143865 5 PIFGGTVYHSPVSR NTTTMSNATANSSIRPIFGGTVYHSPVSRL RPIFGGTVYHSPVSRLPPSGSKPVAASTCS R P I S R L 0 1 0 0 0 0 0 2 1 1 0 0 0 1 2 2 1 0 1 2 0 0 14 0 1515.7834 O43663;G3V3N7;H0YNE4 O43663 504 517 PRC1 Protein regulator of cytokinesis 1 yes no 3 0.0012405 37.954 By MS/MS 2 0.97374 0.90027 11.794 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97374 0.90027 11.794 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2917900 1486300 1431700 0 0 0 0 0 0 0 0 0 2917900 1486300 1431700 0 0 0 0 0 0 26919 1581 28349 142970;142971 143869 143869 1 PIFGLTSNYK SNKDMAGKLINEWSRPIFGLTSNYKGMTRE NEWSRPIFGLTSNYKGMTREEREQRDLEQM R P I Y K G 0 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1138.6023 Q96ST2;A0A1B0GW95 Q96ST2 688 697 IWS1 Protein IWS1 homolog yes no 2 0.0010001 69.423 By MS/MS By matching 1 2 1.1614 0.97714 47.076 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82428 0.91007 NaN 1 0 Median 1.6753 1.4414 54.978 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6425800 3289500 3136300 0 0 0 0 0 0 4832600 2590200 2242400 1593200 699320 893830 0 0 0 0 0 0 26920 3736 28350 142972;142973;142974 143870;143871 143871 2 PIKPSPPYFGLLLASVGR PFFVGVQYHPEFLSRPIKPSPPYFGLLLAS PSPPYFGLLLASVGRLSHYLQKGCRLSPRD R P I G R L 1 1 0 0 0 0 0 2 0 1 3 1 0 1 4 2 0 0 1 1 0 0 18 1 1911.0982 P17812;A0A3B3IRI2;B4E1E0 P17812 533 550 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.026277 15.766 By MS/MS By matching 3 1 0.64319 0.65034 16.689 4 Median 0.66916 0.67392 17.83 3 0 Plateau 0.7372 0.69216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4645200 2734100 1911000 4520900 2660000 1860900 124290 74118 50177 0 0 0 0 0 0 0 0 0 0 0 0 26921 2046 28351 142975;142976;142977;142978 143872;143873 143872 2 PILDPVDFLGLQDK TIKELREMIQLPGARPILDPVDFLGLQDKI RPILDPVDFLGLQDKIKEVPRPRKRLTELL R P I D K I 0 0 0 3 0 1 0 1 0 1 3 1 0 1 2 0 0 0 0 1 0 0 14 0 1568.845 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64 P22570 252 265 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 6.2255E-07 133.07 By MS/MS By MS/MS By matching 1 3 1 0.69878 0.74593 31.626 5 Median NaN NaN NaN 0 0 Median 1.3801 1.1707 NaN 1 0 Median 0.65899 0.6399 10.473 3 0 Median 1.3131 1.1537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20704000 11040000 9664900 0 0 0 8762100 3820400 4941700 11788000 7160500 4627900 154010 58620 95393 0 0 0 0 0 0 26922 2102 28352 142979;142980;142981;142982;142983 143874;143875;143876 143875 3 PILSVQR SDVLIRDNYERAEKRPILSVQRRGSPNPFE NYERAEKRPILSVQRRGSPNPFEITDRVEM R P I Q R R 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 J3QQK2;B4DKL7;Q8NE00 J3QQK2 43 49 TMEM104 Transmembrane protein 104 yes no 2 0.029724 50.12 By MS/MS By matching By matching 1 1 1 1.0783 1.0553 64.222 3 Median 1.0783 1.0553 NaN 1 0 Median 0.54183 0.48518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.696 1.735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795600 1890500 1905100 2718300 1334300 1384000 485340 282370 202970 0 0 0 592040 273910 318130 0 0 0 0 0 0 26923 596 28353 142984;142985;142986 143877 143877 1 PILYSNWLSK LKHFPNIDREKAMSRPILYSNWLSKDYIPV KAMSRPILYSNWLSKDYIPVDQEELRDYVK R P I S K D 0 0 1 0 0 0 0 0 0 1 2 1 0 0 1 2 0 1 1 0 0 0 10 0 1219.6601 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2870 2879 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0034879 56.563 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.90569 0.88859 11.479 4 Median 0.87859 0.87908 NaN 1 0 Median 1.1999 1.0527 NaN 1 0 Median 0.74642 0.79808 NaN 1 0 Median 0.93363 0.89821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29496000 15731000 13765000 8831400 4583200 4248200 7396000 3549300 3846700 11182000 6503200 4678400 2087000 1094900 992040 0 0 0 0 0 0 26924 2865 28354 142987;142988;142989;142990 143878;143879;143880;143881;143882 143878 5 PIPGGQTIGPR TSDKPLQGDGYSGAKPIPGGQTIGPRNTFN SGAKPIPGGQTIGPRNTFNFGSKNVSGISF K P I P R N 0 1 0 0 0 1 0 3 0 2 0 0 0 0 3 0 1 0 0 0 0 0 11 0 1091.6087 P49792 P49792 1086 1096 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.011012 38.303 By matching By MS/MS By matching 1 1 1 0.71373 0.6578 19.651 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60357 0.6578 NaN 1 0 Median 0.71373 0.62135 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0675 0.8953 NaN 1 0 Median 6176900 3705400 2471500 0 0 0 0 0 0 3539800 2262400 1277400 1775700 1042600 733130 0 0 0 861380 400480 460890 26925 2401 28355 142991;142992;142993 143883 143883 1 PIPQTPESAGNK EDSLVSHFYTNPIAKPIPQTPESAGNKHSN IAKPIPQTPESAGNKHSNSNSVDDTIVALN K P I N K H 1 0 1 0 0 1 1 1 0 1 0 1 0 0 3 1 1 0 0 0 0 0 12 0 1237.6303 P52948;A0A3B3ITD8 P52948 666 677 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.046772 25.938 By MS/MS 1 0.95391 0.80299 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95391 0.80299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 662650 404260 258380 0 0 0 0 0 0 0 0 0 662650 404260 258380 0 0 0 0 0 0 26926 2462 28356 142994 143884 143884 1 PIRIVALSSSLSNAK VICSRMRYISSQIERPIRIVALSSSLSNAK PIRIVALSSSLSNAKDVAHWLGCSATSTFN R P I A K D 2 1 1 0 0 0 0 0 0 2 2 1 0 0 1 4 0 0 0 1 0 0 15 1 1554.9093 O75643 O75643 1484 1498 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.062396 27.481 By MS/MS By matching By matching 2 1 2 0.79784 0.74006 19.421 5 Median 0.7958 0.81725 33.54 2 0 Median 0.79784 0.74006 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74943 0.69515 10.925 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16722000 8892700 7829400 15995000 8484400 7510600 549600 310120 239480 0 0 0 177460 98114 79345 0 0 0 0 0 0 26927 1688 28357 142995;142996;142997;142998;142999 143885 143885 1 PIRPGQHPAASPTHPSAIR SKNMARRGHSAQIAKPIRPGQHPAASPTHP GQHPAASPTHPSAIRGGGAFVQNSQPVAVR K P I I R G 3 2 0 0 0 1 0 1 2 2 0 0 0 0 5 2 1 0 0 0 0 0 19 1 1989.0657 P33176 P33176 923 941 KIF5B Kinesin-1 heavy chain yes yes 3;4;5 2.0314E-13 100.45 By MS/MS By MS/MS By MS/MS 2 3 2 0.49882 0.48834 29.694 6 Median 0.30801 0.33694 43.802 2 0 Median 0.55846 0.5384 4.4283 2 0 Median NaN NaN NaN 0 0 Median 0.49882 0.48834 4.9126 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27153000 14875000 12277000 2360200 1866800 493370 23100000 11878000 11222000 0 0 0 1692200 1130600 561560 0 0 0 0 0 0 26928 2221 28358 143000;143001;143002;143003;143004;143005;143006 143886;143887;143888;143889;143890;143891;143892;143893;143894 143890 9 PISIPTNLVSLFSR ATRELLRIPQAALAKPISIPTNLVSLFSRY KPISIPTNLVSLFSRYVDRQKLNLLETKLQ K P I S R Y 0 1 1 0 0 0 0 0 0 2 2 0 0 1 2 3 1 0 0 1 0 0 14 0 1542.877 Q86TB9 Q86TB9 736 749 PATL1 Protein PAT1 homolog 1 yes yes 2 0.0022058 44.309 By MS/MS By MS/MS By matching By matching 5 2 1 2 0.71474 0.70734 36.112 10 Median 0.71989 0.72299 27.591 5 0 Median NaN NaN NaN 0 0 Median 0.51456 0.53186 2.493 2 0 Median 0.69077 0.60508 NaN 1 0 Median 1.2569 1.2653 16.599 2 0 Median NaN NaN NaN 0 0 Median 3294400 1730100 1564300 2031200 959610 1071600 0 0 0 1031100 668270 362780 43740 25070 18670 188450 77179 111270 0 0 0 26929 3266 28359 143007;143008;143009;143010;143011;143012;143013;143014;143015;143016 143895;143896;143897;143898;143899 143895 5 PISTLDNR CMDIQLVEALCGFQKPISTLDNRTIVITSH ALCGFQKPISTLDNRTIVITSHPGQIVKHG K P I N R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 8 0 914.48214 P31689 P31689 276 283 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.016198 49.59 By MS/MS By MS/MS 1 1 1.1994 1.0816 9.9395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1902 1.1604 NaN 1 0 Median 1.2087 1.0082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16848000 7035800 9812000 0 0 0 0 0 0 10230000 4317600 5912500 6617700 2718200 3899600 0 0 0 0 0 0 26930 2204 28360 143017;143018 143900;143901 143900 2 PIVTVWER QTLSLWLIHHRKHSRPIVTVWERELRKAKP HHRKHSRPIVTVWERELRKAKPNRKLTFLY R P I E R E 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 0 2 0 0 8 0 998.55492 Q96P16;A0A0C4DGQ6;K7EQR8 Q96P16 39 46 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 0.031031 38.792 By MS/MS By matching 1 1 0.88606 0.80149 9.0673 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77353 0.75172 NaN 1 0 Median 1.0149 0.85457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2069800 1009300 1060600 0 0 0 0 0 0 1952100 946180 1006000 117710 63101 54612 0 0 0 0 0 0 26931 3709 28361 143019;143020 143902 143902 1 PIVVSKPVTVSR VTKPVPVTKPVTVSRPIVVSKPVTVSRPIA VSRPIVVSKPVTVSRPIAISRHTPPCKMVL R P I S R P 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 2 1 0 0 4 0 0 12 1 1280.7816 Q96KM6 Q96KM6 299 310 ZNF512B Zinc finger protein 512B yes yes 3 0.046672 46.592 By MS/MS By matching 1 1 0.84681 0.88569 12.32 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8489 0.96631 NaN 1 0 Median 0.84474 0.8118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2480700 1315200 1165500 0 0 0 0 0 0 1709400 919930 789420 771310 395220 376090 0 0 0 0 0 0 26932 3694 28362 143021;143022 143903 143903 0 PIYDDDPSLEGGVNGK LIEKNIELFFSGSAKPIYDDDPSLEGGVNG IYDDDPSLEGGVNGKNLGPINEWWITGFDG K P I G K N 0 0 1 3 0 0 1 3 0 1 1 1 0 0 2 1 0 0 1 1 0 0 16 0 1674.7737 P26358 P26358 441 456 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00010663 69.979 By MS/MS 2 1.211 1.0549 42.142 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.211 1.0549 42.142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3580800 1657000 1923800 0 0 0 0 0 0 0 0 0 3580800 1657000 1923800 0 0 0 0 0 0 26933 2142 28363 143023;143024 143904;143905;143906 143904 3 PKLPEDPLLSGLLDSPALK GNLQLELAQVLAQERPKLPEDPLLSGLLDS EDPLLSGLLDSPALKACLDTAVENMPSLKM R P K L K A 1 0 0 2 0 0 1 1 0 0 6 2 0 0 4 2 0 0 0 0 0 0 19 1 2002.135 P49327;A0A0U1RQF0 P49327 1207 1225 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 1.8947E-05 47.047 By MS/MS 1 0.92648 0.90042 NaN 1 Median NaN NaN NaN 0 0 Median 0.92648 0.90042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1584700 843430 741240 0 0 0 1584700 843430 741240 0 0 0 0 0 0 0 0 0 0 0 0 26934 2377 28364 143025 143907;143908 143907 2 PKPAGVLGAVNKPLSATGR SYISEETRVLLLTGKPKPAGVLGAVNKPLS GVLGAVNKPLSATGRKPYVRSTGTETGSNI K P K G R K 3 1 1 0 0 0 0 3 0 0 2 2 0 0 3 1 1 0 0 2 0 0 19 2 1832.0632 Q29RF7 Q29RF7 1135 1153 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 4 9.0474E-05 38.453 By MS/MS By matching 1 1 0.67901 0.77378 21.341 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58395 0.6654 NaN 1 0 Median 0.78954 0.89982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9222700 5311900 3910800 0 0 0 0 0 0 7308100 4254400 3053700 1914600 1057500 857070 0 0 0 0 0 0 26935 3003 28365 143026;143027 143909 143909 1 PKPPSATSIPAILK SEEQLIDIKVAHPIRPKPPSATSIPAILKA RPKPPSATSIPAILKALQDEWDAVMLHSFT R P K L K A 2 0 0 0 0 0 0 0 0 2 1 2 0 0 4 2 1 0 0 0 0 0 14 1 1418.8497 Q9UMS4;F5GY56 Q9UMS4 63 76 PRPF19 Pre-mRNA-processing factor 19 yes no 3 0.033117 19.286 By MS/MS By matching 1 1 0.60664 0.62061 12.428 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54287 0.5684 NaN 1 0 Median 0.67791 0.67762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6207700 3935000 2272600 0 0 0 0 0 0 5152200 3319000 1833300 1055500 616090 439380 0 0 0 0 0 0 26936 4334 28366 143028;143029 143910;143911 143911 2 PKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK VMLESPPKGVTIPYRPKPSSSPVIFAGGQA TIQGQYAIPQPDLTKLHQLAMQQSHFPMTH R P K T K L 3 0 0 1 0 4 0 3 0 3 1 2 0 1 5 3 2 0 2 1 0 0 31 1 3258.6925 F8VRH0 F8VRH0 55 85 PCBP2 yes yes 3 0.017395 14.931 By MS/MS 1 0.51391 0.53939 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51391 0.53939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2186800 1494200 692660 0 0 0 0 0 0 2186800 1494200 692660 0 0 0 0 0 0 0 0 0 26937 1062 28367 143030 143912 143912 1 PKPSSSPVIFAGGQDR TLSQSPPKGVTIPYRPKPSSSPVIFAGGQD KPSSSPVIFAGGQDRYSTGSDSASFPHTTP R P K D R Y 1 1 0 1 0 1 0 2 0 1 0 1 0 1 3 3 0 0 0 1 0 0 16 1 1641.8475 Q15366;H3BSS4 Q15366 184 199 PCBP2 Poly(rC)-binding protein 2 yes no 3 0.00026109 41.871 By MS/MS By MS/MS 1 1 0.59758 0.59639 34.82 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6697 0.76289 NaN 1 0 Median 0.53323 0.46624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17241000 9979200 7261400 0 0 0 0 0 0 14984000 8710600 6272900 2257100 1268600 988430 0 0 0 0 0 0 26938 2942 28368 143031;143032 143913;143914;143915 143913 3 PKVQSGSESVIQEYVDLR TYKAQLEPVASPAKKPKVQSGSESVIQEYV QSGSESVIQEYVDLRTHYSELTTLTSQYIK K P K L R T 0 1 0 1 0 2 2 1 0 1 1 1 0 0 1 3 0 0 1 3 0 0 18 1 2033.0429 Q15149;H0YDN1 Q15149 1440 1457 PLEC Plectin yes no 5 0.044099 15.766 By MS/MS By matching 1 1 1.0077 1.1119 3.0338 2 Median 1.0605 1.136 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95755 1.0883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3560500 1854200 1706300 2753700 1482000 1271700 0 0 0 806850 372280 434580 0 0 0 0 0 0 0 0 0 26939 2933 28369 143033;143034 143916 143916 0 PLAGGEPVSLGSLR AAAAAAQSVYAFSARPLAGGEPVSLGSLRG RPLAGGEPVSLGSLRGKVLLIENVASLGTT R P L L R G 1 1 0 0 0 0 1 3 0 0 3 0 0 0 2 2 0 0 0 1 0 0 14 0 1351.746 A0A087WUQ6;P07203;A0A2R8Y6B6;A0A494C1C9;A0A494C118 A0A087WUQ6 23 36 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 2 7.7532E-11 104.79 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26940 33 28370 143035 143917 143917 1 PLEEDCTLELLK TVIAKVNNVVWDLDRPLEEDCTLELLKFED LDRPLEEDCTLELLKFEDEEAQAVYWHSSA R P L L K F 0 0 0 1 1 0 3 0 0 0 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1458.7276 P26639 P26639 132 143 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 0.058433 13.2 By MS/MS By matching By matching 1 1 1 1.0098 0.89418 8.9886 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83332 0.80739 NaN 1 0 Median 1.0259 0.89418 NaN 1 0 Median 1.0098 0.96584 NaN 1 0 Median NaN NaN NaN 0 0 Median 22795000 11612000 11183000 0 0 0 0 0 0 19764000 10193000 9571600 576820 279570 297250 2454200 1139800 1314500 0 0 0 26941 2147 28371 143036;143037;143038 143918 143918 1 PLELSDFR ISASCRRPIKGAAGRPLELSDFRMEESFSS IKGAAGRPLELSDFRMEESFSSKYVPKYVP R P L F R M 0 1 0 1 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 8 0 975.50255 P42167;G5E972;H0YJH7 P42167 374 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.0007736 98.299 By matching By MS/MS By matching By MS/MS By MS/MS 1 5 2 1 3 1.2269 1.1054 24.932 11 Median NaN NaN NaN 0 0 Median 1.9282 1.7191 NaN 1 0 Median 0.96648 0.99099 17.771 4 2 Median 1.2622 1.0815 3.0814 2 0 Median 0.83358 0.83599 NaN 1 0 Median 1.2819 1.1273 32.029 3 0 Median 60627000 30950000 29677000 0 0 0 116280 43118 73162 43221000 22849000 20372000 1342600 597910 744690 4135900 2055900 2080000 11811000 5403800 6407500 26942 2307 28372 143039;143040;143041;143042;143043;143044;143045;143046;143047;143048;143049;143050 143919;143920;143921;143922;143923;143924;143925;143926 143919 8 PLEMIEPR AHCKRGNGLIKVNGRPLEMIEPRTLQYKLL LIKVNGRPLEMIEPRTLQYKLLEPVLLLGK R P L P R T 0 1 0 0 0 0 2 0 0 1 1 0 1 0 2 0 0 0 0 0 0 0 8 0 983.511 P62249;M0R3H0;M0R1M5;Q6IPX4 P62249 38 45 RPS16 40S ribosomal protein S16 yes no 2 0.014044 51.854 By MS/MS 1 1.0171 0.84391 NaN 1 Median NaN NaN NaN 0 0 Median 1.0171 0.84391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3482800 1745900 1737000 0 0 0 3482800 1745900 1737000 0 0 0 0 0 0 0 0 0 0 0 0 26943 2574 28373 143051 143927;143928 143927 2 PLENLEEEGLPK ______________________________ ______________________________ M P L P K N 0 0 1 0 0 0 4 1 0 0 3 1 0 0 2 0 0 0 0 0 0 0 12 0 1366.698 Q15008;C9J7B7 Q15008 2 13 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.00063169 64.374 By matching By matching By MS/MS 1 1 1 1.123 1.1132 19.216 3 Plateau 0.84829 0.79421 NaN 1 0 Median 1.1093 0.94911 NaN 1 0 Median 1.123 1.166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15433000 7208500 8224500 1470000 811660 658370 5344600 2209500 3135100 8618400 4187400 4431000 0 0 0 0 0 0 0 0 0 26944 2911 28374 143052;143053;143054 143929;143930 143929 2 PLHLHIIPTEPFPTTR NCFELTPAFSQLTARPLHLHIIPTEPFPTT LHLHIIPTEPFPTTRKNGERPSHEVQIIKN R P L T R K 0 1 0 0 0 0 1 0 2 2 2 0 0 1 4 0 3 0 0 0 0 0 16 0 1868.0309 O60306 O60306 1327 1342 AQR Intron-binding protein aquarius yes yes 3 2.7023E-05 64.675 By MS/MS 1 0.37089 0.40796 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37089 0.40796 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5730100 4289000 1441000 0 0 0 0 0 0 5730100 4289000 1441000 0 0 0 0 0 0 0 0 0 26945 1611 28375 143055 143931 143931 1 PLIQQAMAK YNLHSAYGNWFPGSKPLIQQAMAKIMKANP WFPGSKPLIQQAMAKIMKANPALYVLRERI K P L A K I 2 0 0 0 0 2 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 9 0 998.55829 Q6P2Q9 Q6P2Q9 1724 1732 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00089599 91.906 By MS/MS 1 1.5807 1.3946 NaN 1 Median NaN NaN NaN 0 0 Median 1.5807 1.3946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857700 678150 1179600 0 0 0 1857700 678150 1179600 0 0 0 0 0 0 0 0 0 0 0 0 26946 3157 28376 143056 143932 143932 1 PLISVYSEK ______________________________ ______________________________ R P L E K G 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 9 0 1034.5648 P36578;H3BTP7;H3BU31 P36578 6 14 RPL4 60S ribosomal protein L4 yes no 2 7.0703E-05 150.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 4 2 2 1.1956 0.9865 29.694 14 Median 0.95858 0.87829 NaN 1 0 Median 1.2002 1.0098 53.754 4 1 Median 0.99522 0.95328 NaN 1 0 Median 1.3896 1.1818 15.205 4 0 Median 0.9127 0.91744 0.35204 2 0 Median 1.2862 1.0626 10.235 2 0 Median 265440000 133480000 131950000 73472000 38814000 34659000 82045000 39530000 42515000 36557000 18558000 17999000 30805000 15725000 15080000 30372000 15539000 14833000 12186000 5317000 6868800 26947 2260 28377 143057;143058;143059;143060;143061;143062;143063;143064;143065;143066;143067;143068;143069;143070 143933;143934;143935;143936;143937;143938;143939;143940;143941;143942;143943;143944;143945;143946;143947;143948 143945 16 PLISVYSEKGESSGK ______________________________ PLISVYSEKGESSGKNVTLPAVFKAPIRPD R P L G K N 0 0 0 0 0 0 2 2 0 1 1 2 0 0 1 4 0 0 1 1 0 0 15 1 1579.8094 P36578;H3BTP7;H3BU31 P36578 6 20 RPL4 60S ribosomal protein L4 yes no 2;3 1.3717E-61 190.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 1.0923 1.0487 16.181 9 Median 1.0783 1.0274 12.881 2 1 Median 0.91704 0.84925 11.004 2 0 Median NaN NaN NaN 0 0 Median 1.2099 1.1492 NaN 1 0 Median 1.0923 1.1662 16.522 3 2 Median 1.1767 1.0487 NaN 1 0 Median 233790000 116050000 117750000 67378000 35983000 31395000 15849000 7995700 7853700 0 0 0 34891000 15934000 18957000 100250000 50043000 50211000 15421000 6091600 9329700 26948 2260 28378 143071;143072;143073;143074;143075;143076;143077;143078;143079 143949;143950;143951;143952;143953;143954;143955;143956;143957;143958;143959;143960;143961 143954 13 PLLQVSR KLRNWQWWRLFTKVKPLLQVSRQEEEMMAK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K P L S R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 P35579 P35579 836 842 MYH9 Myosin-9 yes yes 2 0.02008 60.76 By matching By MS/MS 1 1 0.74674 0.68905 1.0874 2 Median 0.68301 0.68377 NaN 1 0 Median 0.81642 0.69437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4397200 2515000 1882200 914740 497420 417320 3482500 2017600 1464900 0 0 0 0 0 0 0 0 0 0 0 0 26949 2244 28379 143080;143081 143962;143963 143963 2 PLLTPAPLDSGPGPFK ADVFQRQRIPDSYARPLLTPAPLDSGPGPF LLTPAPLDSGPGPFKTPMQPPPSSQDPYGS R P L F K T 1 0 0 1 0 0 0 2 0 0 3 1 0 1 5 1 1 0 0 0 0 0 16 0 1605.8766 Q8NEZ4 Q8NEZ4 2029 2044 KMT2C Histone-lysine N-methyltransferase 2C yes yes 2 1.8222E-06 79.82 By MS/MS 1 0.31435 0.34503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31435 0.34503 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748800 1292200 456620 0 0 0 0 0 0 1748800 1292200 456620 0 0 0 0 0 0 0 0 0 26950 3431 28380 143082 143964 143964 1 PLMAEPR PPPHELRGGPLPEPRPLMAEPRGPMLDQRG GGPLPEPRPLMAEPRGPMLDQRGPPLDGRG R P L P R G 1 1 0 0 0 0 1 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 7 0 812.42146 P33240;E7EWR4;E9PID8 P33240 382 388 CSTF2 Cleavage stimulation factor subunit 2 yes no 2 0.050156 40.103 By matching By MS/MS 1 1 0.94103 0.8813 11.006 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78122 0.81531 NaN 1 0 Median 1.1335 0.95262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6138400 3328800 2809600 0 0 0 0 0 0 5484400 3054800 2429600 653910 273940 379970 0 0 0 0 0 0 26951 2222 28381 143083;143084 143965 143965 1 PLNEAEILR ADPAECSIKVMCRFRPLNEAEILRGDKFIP VMCRFRPLNEAEILRGDKFIPKFKGDETVV R P L L R G 1 1 1 0 0 0 2 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 9 0 1053.5819 O60282 O60282 17 25 KIF5C Kinesin heavy chain isoform 5C yes yes 2 0.019166 40.103 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0971 1.1166 25.278 6 Median 0.7543 0.71347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1812 1.2376 20.73 2 0 Median NaN NaN NaN 0 0 Median 1.0796 1.0976 8.6049 2 0 Median 1.6205 1.388 NaN 1 0 Median 31321000 14054000 17266000 3339100 1750900 1588200 0 0 0 7453500 3313200 4140300 0 0 0 19475000 8562600 10913000 1052500 427570 624900 26952 1609 28382 143085;143086;143087;143088;143089;143090 143966;143967;143968;143969;143970;143971;143972 143966 7 PLPAEEPER DEKRRRVTSRERVARPLPAEEPERAKSGTR RERVARPLPAEEPERAKSGTRTEKEEERDE R P L E R A 1 1 0 0 0 0 3 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 9 0 1036.5189 P26358;K7ENQ6 P26358 216 224 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0074886 51.346 By MS/MS 1 0.64765 0.56868 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64765 0.56868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2214700 1412800 801960 0 0 0 0 0 0 0 0 0 2214700 1412800 801960 0 0 0 0 0 0 26953 2142 28383 143091 143973;143974 143974 2 PLPPAAIESPAVAAPAYSR WSQWLGGSSWPGYVRPLPPAAIESPAVAAP AAIESPAVAAPAYSRALSRQLSSGVSEIRH R P L S R A 6 1 0 0 0 0 1 0 0 1 1 0 0 0 5 2 0 0 1 1 0 0 19 0 1877.0047 P04792;F8WE04 P04792 57 75 HSPB1 Heat shock protein beta-1 yes no 2 0.004425 44.511 By MS/MS 1 0.48664 0.45824 NaN 1 Median 0.48664 0.45824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1514200 1176900 337380 1514200 1176900 337380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26954 1851 28384 143092 143975 143975 1 PLPVALQTR ______________________________ ______________________________ M P L T R L 1 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 9 0 993.59712 O60828 O60828 2 10 PQBP1 Polyglutamine-binding protein 1 yes yes 2 0.001354 82.452 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 3 2 0.89125 0.78954 14.417 13 Median 0.9927 0.92736 NaN 1 0 Median 0.94215 0.78954 NaN 1 0 Median 0.74622 0.72512 14.905 3 0 Median 1.0467 0.83566 12.385 3 0 Median 0.72482 0.73925 17.904 3 0 Median 0.90209 0.75467 18.419 2 0 Median 64041000 34210000 29832000 8740400 3930200 4810200 2854000 1299300 1554600 27275000 15020000 12255000 11665000 6115900 5549400 12004000 7055900 4948100 1503000 788770 714250 26955 1633 28385 143093;143094;143095;143096;143097;143098;143099;143100;143101;143102;143103;143104;143105 143976;143977;143978;143979;143980;143981;143982 143979 7 PLQVLLTHAGASR P L S R 2 1 0 0 0 1 0 1 1 0 3 0 0 0 1 1 1 0 0 1 0 0 13 0 1361.7779 REV__A0A0C4DFY3 yes no 2 0.040448 25.938 By MS/MS By matching By matching 2 2 1 0.94959 0.91223 17.05 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94959 0.91223 0 2 0 Median 0.92825 0.7553 26.179 2 0 Median NaN NaN NaN 0 0 Median 1.1668 0.93872 NaN 1 0 Median 39775000 20138000 19637000 0 0 0 0 0 0 30475000 15849000 14626000 3117900 1359100 1758800 0 0 0 6182700 2930300 3252400 + 26956 4508 28386 143106;143107;143108;143109;143110 143983;143984 143983 2 PLRLPLQDVYK EALDCILPPTRPTDKPLRLPLQDVYKIGGI PTDKPLRLPLQDVYKIGGIGTVPVGRVETG K P L Y K I 0 1 0 1 0 1 0 0 0 0 3 1 0 0 2 0 0 0 1 1 0 0 11 1 1340.7816 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639 P68104 245 255 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 3 0.00056544 57.203 By MS/MS By matching 3 1 0.76521 0.78662 9.7063 4 Median 0.78222 0.80732 8.2357 3 0 Median NaN NaN NaN 0 0 Median 0.61995 0.71543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9667400 4673900 4993500 8594200 4058300 4535800 0 0 0 1073200 615540 457670 0 0 0 0 0 0 0 0 0 26957 2632;404 28387 143111;143112;143113;143114 143985;143986 143985 2 PLRPLSPPDGQR P L Q R 0 2 0 1 0 1 0 1 0 0 2 0 0 0 4 1 0 0 0 0 0 0 12 1 1331.731 REV__Q86UU5 yes no 2 0.044984 37.476 By MS/MS By matching 1 1 0.60662 0.64485 27.08 2 Median 0.73058 0.78094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5037 0.53247 NaN 1 0 Median NaN NaN NaN 0 0 Median 23894000 11428000 12466000 13701000 5406100 8295200 0 0 0 0 0 0 0 0 0 10193000 6021900 4170800 0 0 0 + 26958 4548 28388 143115;143116 143987 143987 1 PLSHQPGPEAPALPK FRAVLGEVVLYSGARPLSHQPGPEAPALPK PLSHQPGPEAPALPKTAAQLKKEAKKREKL R P L P K T 2 0 0 0 0 1 1 1 1 0 2 1 0 0 5 1 0 0 0 0 0 0 15 0 1537.8253 P26640;A0A140T936;A0A140T954 P26640 215 229 VARS Valine--tRNA ligase yes no 3 0.00010326 62.378 By MS/MS 1 0.7931 0.69625 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7931 0.69625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12452000 7482300 4970000 0 0 0 0 0 0 0 0 0 12452000 7482300 4970000 0 0 0 0 0 0 26959 2148 28389 143117 143988;143989 143989 2 PLSLIQGPPGTGK LNHSQVYAVKTVLQRPLSLIQGPPGTGKTV QRPLSLIQGPPGTGKTVTSATIVYHLARQG R P L G K T 0 0 0 0 0 1 0 3 0 1 2 1 0 0 3 1 1 0 0 0 0 0 13 0 1263.7187 Q92900 Q92900 497 509 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.075132 37.344 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26960 3564 28390 143118 143990 143990 1 PLSPLHSLTPYQVPFNAVALR SILSYLSQLQPPMPKPLSPLHSLTPYQVPF SLTPYQVPFNAVALRITHSDVAPTHILYAV K P L L R I 2 1 1 0 0 1 0 0 1 0 4 0 0 1 4 2 1 0 1 2 0 0 21 0 2319.2739 Q5SY16 Q5SY16 538 558 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 4.3147E-05 37.624 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 4 1 0.59745 0.57891 21.533 10 Median 0.83509 0.83631 34.184 2 0 Median 0.61753 0.54888 7.2549 2 0 Median 0.55159 0.56025 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60936 0.57155 10.834 4 0 Linear 0.73919 0.5996 NaN 1 0 Median 28613000 17830000 10783000 3467200 2078400 1388800 1212300 788440 423830 14463000 9058100 5404800 0 0 0 8426400 5363600 3062800 1044200 541110 503070 26961 3077 28391 143119;143120;143121;143122;143123;143124;143125;143126;143127;143128 143991;143992;143993;143994;143995;143996 143991 6 PLSSGGEEEEKPR TESEAPLKEDGLLPKPLSSGGEEEEKPRGE PKPLSSGGEEEEKPRGEASEDLCEMALDPE K P L P R G 0 1 0 0 0 0 4 2 0 0 1 1 0 0 2 2 0 0 0 0 0 0 13 1 1413.6736 Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163 624 636 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 3 0.00086566 46.88 By MS/MS 1 0.88622 0.84313 NaN 1 Median NaN NaN NaN 0 0 Median 0.88622 0.84313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1514700 709770 804940 0 0 0 1514700 709770 804940 0 0 0 0 0 0 0 0 0 0 0 0 26962 3354 28392 143129 143997 143997 1 PLTQEEIAQR MFAVDAKALPQNKPRPLTQEEIAQRRERAR QNKPRPLTQEEIAQRRERARQRHAEKLAAA R P L Q R R 1 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1183.6197 Q7Z2Z2 Q7Z2Z2 432 441 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 2 6.5039E-06 154.49 By MS/MS 1 0.90171 0.75669 NaN 1 Median NaN NaN NaN 0 0 Median 0.90171 0.75669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7462800 3845100 3617700 0 0 0 7462800 3845100 3617700 0 0 0 0 0 0 0 0 0 0 0 0 26963 3238 28393 143130 143998;143999 143999 2 PLTSPESLSR LSEAVSRAAKAAGARPLTSPESLSRDLEAP AAGARPLTSPESLSRDLEAPEVQESYRQQL R P L S R D 0 1 0 0 0 0 1 0 0 0 2 0 0 0 2 3 1 0 0 0 0 0 10 0 1085.5717 P46379;A0A0G2JK23;A0A024RCR6 P46379 1078 1087 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0051967 66.27 By MS/MS 1 0.85134 0.71457 NaN 1 Median NaN NaN NaN 0 0 Median 0.85134 0.71457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7307000 3854900 3452100 0 0 0 7307000 3854900 3452100 0 0 0 0 0 0 0 0 0 0 0 0 26964 8 28394 143131 144000 144000 1 PLVAAQFLWNALYR ATQLIRKGETIFVERPLVAAQFLWNALYRY RPLVAAQFLWNALYRYRGH___________ R P L Y R Y 3 1 1 0 0 1 0 0 0 0 3 0 0 1 1 0 0 1 1 1 0 0 14 0 1660.9089 E2QRN5;F8WEJ9;C9IYN9;Q6GMV2 E2QRN5 53 66 SMYD5 SET and MYND domain-containing protein 5 yes no 2 6.0094E-08 102.61 By MS/MS 1 0.78811 0.67857 NaN 1 Median NaN NaN NaN 0 0 Median 0.78811 0.67857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1051200 641530 409620 0 0 0 1051200 641530 409620 0 0 0 0 0 0 0 0 0 0 0 0 26965 661 28395 143132 144001 144001 1 PLVALLDGR LGVRPPIMNGPLHPRPLVALLDGRDCTVEM GPLHPRPLVALLDGRDCTVEMPILKDVATV R P L G R D 1 1 0 1 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 9 0 952.57057 P56545;E7EUB3;Q13363;D6RAX2;E7ESU7;E7EPF8;E9PGB1 Q13363 28 36 CTBP2;CTBP1 C-terminal-binding protein 2;C-terminal-binding protein 1 no no 2 0.00088636 92.439 By MS/MS By matching By MS/MS By matching 1 2 3 2 1.0288 0.96149 13.469 8 Median 0.90457 0.90219 NaN 1 0 Median 1.2128 1.0485 5.0945 2 0 Median 0.91835 0.90015 9.4502 3 0 Plateau 1.254 1.0991 11.942 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51447000 26066000 25381000 2194800 1113300 1081500 3063800 1303500 1760300 44023000 22769000 21254000 2165500 880180 1285300 0 0 0 0 0 0 26966 2514;2808 28396 143133;143134;143135;143136;143137;143138;143139;143140 144002;144003;144004;144005;144006;144007;144008;144009 144004 8 PLVETIFER DDSAPNEMVYRFTARPLVETIFERGMATCF YRFTARPLVETIFERGMATCFAYGQTGSGK R P L E R G 0 1 0 0 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 9 0 1102.6023 O00139 O00139 296 304 KIF2A Kinesin-like protein KIF2A yes yes 2 0.0044715 60.59 By matching By matching By MS/MS By MS/MS 1 3 1 1 0.9272 0.88763 28.483 6 Median 0.77384 0.72533 NaN 1 0 Median 1.4882 1.3183 42.142 3 0 Plateau 0.90513 0.97102 NaN 1 0 Median 1.0522 0.90641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6866700 3377200 3489500 640890 425480 215410 2142600 880380 1262200 2765300 1461100 1304200 1318000 610280 707690 0 0 0 0 0 0 26967 1440 28397 143141;143142;143143;143144;143145;143146 144010;144011;144012 144010 3 PLVLPSPLVTPGSNSQER SHDNMEEKVPWVCPRPLVLPSPLVTPGSNS LPSPLVTPGSNSQERYIQAEREKGILQELF R P L E R Y 0 1 1 0 0 1 1 1 0 0 3 0 0 0 4 3 1 0 0 2 0 0 18 0 1890.0211 Q96QC0 Q96QC0 466 483 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 9.0869E-06 56.225 By MS/MS By matching 3 2 0.62695 0.5531 17.936 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50939 0.5531 24.114 3 0 Median 0.65651 0.55888 5.8145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10627000 6923200 3703400 0 0 0 0 0 0 9525400 6238300 3287100 1101200 684840 416320 0 0 0 0 0 0 26968 3718 28398 143147;143148;143149;143150;143151 144013;144014;144015;144016 144014 4 PLYEGLGSGGEK ______________________________ ______________________________ M P L E K T 0 0 0 0 0 0 2 4 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 0 1205.5928 Q9NZ32;G3V2Q5;G3V5Y4;F6S9Y6;G3V524;G3V4K6 Q9NZ32 2 13 ACTR10 Actin-related protein 10 yes no 2 0.029201 28.727 By MS/MS By matching 2 1 0.37286 0.26679 175.37 3 Median NaN NaN NaN 0 0 Median 0.15578 0.15835 244.33 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37286 0.26679 NaN 1 0 Median NaN NaN NaN 0 0 Median 8926700 6289400 2637300 0 0 0 6645200 4748300 1896900 0 0 0 0 0 0 2281500 1541100 740440 0 0 0 26969 4183 28399 143152;143153;143154 144017 144017 1 PLYSVTVK ______________________________ ______________________________ M P L V K W 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 1 2 0 0 8 0 905.52222 A6NJA2;P54578 A6NJA2 2 9 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.0038598 84.916 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.014 0.90494 25.36 6 Median 0.76819 0.70002 24.68 2 0 Median 1.269 1.0782 13.147 2 0 Median 0.77965 0.80309 NaN 1 0 Median 1.2605 1.0975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28104000 13741000 14363000 12621000 6449000 6172400 12724000 5958300 6765900 2137000 1072300 1064700 621070 260830 360240 0 0 0 0 0 0 26970 523 28400 143155;143156;143157;143158;143159;143160 144018;144019;144020 144018 3 PLYVALAQR TKAVTEMNGRIVATKPLYVALAQRKEERQA RIVATKPLYVALAQRKEERQAHLTNQYMQR K P L Q R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1029.5971 B1ANR0;Q13310;H0Y5F5;H0YEU6;P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;Q4VXU2;H0YB86 P11940 362 370 PABPC4;PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 0.0054606 57.559 By matching By MS/MS By MS/MS 1 2 2 1.0356 0.86741 23.683 5 Median 1.297 1.2695 NaN 1 0 Median 0.83863 0.72626 11.119 2 0 Median NaN NaN NaN 0 0 Median 1.0638 0.90162 5.4704 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15905000 8049300 7855800 2712800 1169000 1543800 11545000 6036200 5508900 0 0 0 1647200 844100 803140 0 0 0 0 0 0 26971 1973;576;1151 28401 143161;143162;143163;143164;143165 144021;144022;144023;144024;144025;144026;144027;144028 144024 8 PMEIFVDDETK ______________________________ DIGKPMEIFVDDETKLTLHGLQQYYVKLKD K P M T K L 0 0 0 2 0 0 2 0 0 1 0 1 1 1 1 0 1 0 0 1 0 0 11 0 1322.6064 H0Y400 H0Y400 10 20 DDX39B yes yes 2 4.1337E-06 160.53 By MS/MS By MS/MS 2 2 1.0049 0.93549 10.944 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91584 0.88498 6.2563 2 0 Median 1.1396 1.0209 10.768 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40201000 17933000 22268000 0 0 0 0 0 0 25803000 11433000 14371000 14398000 6500000 7897900 0 0 0 0 0 0 26972 1146 28402;28403 143166;143167;143168;143169 144029;144030;144031;144032;144033 144031 384 4 PMFIVNTNVPR ______________________________ ______________________________ M P M P R A 0 1 2 0 0 0 0 0 0 1 0 0 1 1 2 0 1 0 0 2 0 0 11 0 1286.6805 P14174 P14174 2 12 MIF Macrophage migration inhibitory factor yes yes 2;3 2.6108E-65 241.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 8 7 6 1 0.81912 0.74646 15.62 33 Median 0.73975 0.7143 22.775 11 1 Median 0.97491 0.80935 9.9692 8 0 Median 0.75383 0.75905 15.771 7 0 Median 0.96932 0.7627 4.9171 6 1 Median 0.81912 0.86498 NaN 1 0 Median NaN NaN NaN 0 0 Median 3558700000 1967600000 1591100000 2411100000 1368800000 1042300000 767550000 380690000 386860000 347210000 200260000 146960000 19360000 9950200 9410100 13520000 7900300 5619900 0 0 0 26973 2001 28404;28405;28406;28407 143170;143171;143172;143173;143174;143175;143176;143177;143178;143179;143180;143181;143182;143183;143184;143185;143186;143187;143188;143189;143190;143191;143192;143193;143194;143195;143196;143197;143198;143199;143200;143201;143202;143203 144034;144035;144036;144037;144038;144039;144040;144041;144042;144043;144044;144045;144046;144047;144048;144049;144050;144051;144052;144053;144054;144055;144056;144057;144058;144059;144060;144061;144062;144063;144064;144065;144066;144067;144068;144069;144070;144071;144072;144073;144074;144075;144076;144077;144078;144079;144080;144081;144082;144083;144084;144085;144086;144087;144088;144089;144090;144091;144092;144093;144094;144095;144096;144097;144098;144099;144100;144101;144102;144103;144104;144105;144106;144107;144108;144109;144110;144111;144112;144113;144114;144115;144116;144117;144118;144119;144120;144121;144122;144123;144124;144125;144126;144127;144128;144129 144117 791 96 PMIHELLTEGR CTAFGKDVLKLVEARPMIHELLTEGRRSKT VEARPMIHELLTEGRRSKTNKAKTLATWAT R P M G R R 0 1 0 0 0 0 2 1 1 1 2 0 1 0 1 0 1 0 0 0 0 0 11 0 1294.6704 Q14974;J3KTM9 Q14974 841 851 KPNB1 Importin subunit beta-1 yes no 2;3 3.8863E-05 111.27 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 5 5 5 1 3 1.0878 0.96405 25.944 21 Median 0.86409 0.81738 11.353 3 0 Median 1.1387 0.98466 31.616 5 0 Median 0.87501 0.92244 44.813 5 0 Median 1.1549 1.0037 6.4591 4 0 Median 0.90984 0.96405 NaN 1 0 Median 1.1266 0.95839 7.4555 3 0 Median 226820000 112260000 114560000 40388000 21113000 19275000 49539000 22640000 26899000 114650000 58383000 56266000 17232000 7738300 9493500 2652000 1376000 1276000 2359200 1007300 1351900 26974 2904 28408;28409 143204;143205;143206;143207;143208;143209;143210;143211;143212;143213;143214;143215;143216;143217;143218;143219;143220;143221;143222;143223;143224;143225 144130;144131;144132;144133;144134;144135;144136;144137;144138;144139;144140;144141;144142;144143;144144;144145;144146;144147 144137 1589 18 PMIHELLTEGRR CTAFGKDVLKLVEARPMIHELLTEGRRSKT EARPMIHELLTEGRRSKTNKAKTLATWATK R P M R R S 0 2 0 0 0 0 2 1 1 1 2 0 1 0 1 0 1 0 0 0 0 0 12 1 1450.7715 Q14974;J3KTM9 Q14974 841 852 KPNB1 Importin subunit beta-1 yes no 3 1.5197E-06 118.28 By MS/MS By MS/MS By matching 2 1 2 0.94875 1.019 54.002 5 Median 0.7605 0.81168 25.601 2 0 Median NaN NaN NaN 0 0 Median 0.98203 1.1347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5721 1.7141 73.55 2 0 Median NaN NaN NaN 0 0 Median 20787000 10499000 10289000 7803800 3817200 3986600 0 0 0 8674100 4470600 4203500 0 0 0 4309300 2210700 2098600 0 0 0 26975 2904 28410 143226;143227;143228;143229;143230 144148;144149;144150;144151 144151 4 PMNIQLVTSQIDAQR LKAMKQYNGVPLDGRPMNIQLVTSQIDAQR PMNIQLVTSQIDAQRRPAQSVNRGGMTRNR R P M Q R R 1 1 1 1 0 3 0 0 0 2 1 0 1 0 1 1 1 0 0 1 0 0 15 0 1712.888 Q86V81;E9PB61 Q86V81 175 189 ALYREF THO complex subunit 4 yes no 2;3 9.2812E-14 174.1 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 4 2 2 1.1204 0.95402 16.304 14 Median 0.89628 0.86888 NaN 1 0 Median 1.2306 1.0361 NaN 1 0 Median 0.94327 0.91862 28.617 4 0 Median 1.1743 0.98294 6.5183 4 0 Median 1.0133 1.0084 15.653 2 0 Median 1.2431 1.0089 18.883 2 0 Median 53814000 26421000 27393000 1147700 562950 584740 2014800 821870 1192900 35635000 17985000 17651000 2909000 1321600 1587500 9659600 4616300 5043300 2447800 1113700 1334100 26976 3286 28411;28412 143231;143232;143233;143234;143235;143236;143237;143238;143239;143240;143241;143242;143243;143244 144152;144153;144154;144155;144156;144157;144158;144159;144160;144161;144162;144163 144154 1701 12 PMTLGYWNIR ______________________________ ______________________________ M P M I R G 0 1 1 0 0 0 0 1 0 1 1 0 1 0 1 0 1 1 1 0 0 0 10 0 1249.6278 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7 E9PHN7 2 11 GSTM2 Glutathione S-transferase Mu 2 yes no 2 0.00071486 105.57 By MS/MS 1 0.78663 0.74744 NaN 1 Median 0.78663 0.74744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26207000 14685000 11522000 26207000 14685000 11522000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26977 935 28413 143245 144164 144164 1 PMYSNPPLNGAR DEAKRVESQLKILIRPMYSNPPLNGARIAA LIRPMYSNPPLNGARIAAAILNTPDLRKQW R P M A R I 1 1 2 0 0 0 0 1 0 0 1 0 1 0 3 1 0 0 1 0 0 0 12 0 1315.6343 P00505 P00505 314 325 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.010147 37.191 By MS/MS 1 0.78005 0.66894 NaN 1 Median NaN NaN NaN 0 0 Median 0.78005 0.66894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2101600 1084200 1017400 0 0 0 2101600 1084200 1017400 0 0 0 0 0 0 0 0 0 0 0 0 26978 1823 28414 143246 144165 144165 1 PNFEPPQYPYIPAHITKPK LQDWVIDDCIGNWWRPNFEPPQYPYIPAHI PPQYPYIPAHITKPKEHKKLFLVQLQEKAL R P N P K E 1 0 1 0 0 1 1 0 1 2 0 2 0 1 6 0 1 0 2 0 0 0 19 1 2236.1681 O43809;H3BND3 O43809 151 169 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 3 0.0031497 37.999 By MS/MS 1 0.32124 0.32038 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32124 0.32038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6724800 5005400 1719500 0 0 0 0 0 0 6724800 5005400 1719500 0 0 0 0 0 0 0 0 0 26979 1592 28415 143247 144166 144166 1 PNFSGNWK ______________________________ ______________________________ M P N W K I 0 0 2 0 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 8 0 948.44537 P29373;Q5SYZ4 P29373 2 9 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2 0.0028204 129.4 By MS/MS By MS/MS By matching 3 1 1 0.98567 1.0682 53.621 5 Median 0.69193 0.62668 54.015 3 0 Median 1.859 1.5305 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98567 1.0682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43795000 22271000 21524000 31798000 18307000 13491000 11772000 3855700 7916500 0 0 0 225320 109110 116210 0 0 0 0 0 0 26980 2171 28416;28417 143248;143249;143250;143251;143252 144167;144168;144169;144170 144167 3 PNHTIYINNLNEK ______________________________ TRPNHTIYINNLNEKIKKDELKKSLYAIFS R P N E K I 0 0 4 0 0 0 1 0 1 2 1 1 0 0 1 0 1 0 1 0 0 0 13 0 1568.7947 P09012;M0R268;M0R221;M0R2B8;M0QXK2;M0R0G9 P09012 8 20 SNRPA U1 small nuclear ribonucleoprotein A yes no 2;3 1.1106E-06 97.69 By MS/MS By matching By matching 2 1 1 1.1844 1.1377 48.521 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1844 1.1377 7.9193 2 0 Median 1.5118 1.2687 NaN 1 0 Median 0.45539 0.45146 NaN 1 0 Median NaN NaN NaN 0 0 Median 40314000 19186000 21128000 0 0 0 0 0 0 29431000 14676000 14755000 7695700 2571500 5124200 3186900 1938400 1248500 0 0 0 26981 1910 28418 143253;143254;143255;143256 144171;144172 144171 2 PNIVLFSGSSHQDLSQR ______________________________ IVLFSGSSHQDLSQRVADRLGLELGKVVTK M P N Q R V 0 1 1 1 0 2 0 1 1 1 2 0 0 1 1 4 0 0 0 1 0 0 17 0 1883.949 P11908;A6NMS2;D3YTJ7 P11908 2 18 PRPS2 Ribose-phosphate pyrophosphokinase 2 yes no 3 0.00015258 40.856 By MS/MS By MS/MS By matching 1 1 1 0.93673 0.87708 14.476 3 Median 0.93673 0.87708 NaN 1 0 Median 1.1212 0.94311 NaN 1 0 Median 0.65898 0.71349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18176000 9732900 8443200 13142000 6731400 6410800 2124600 1112000 1012600 2909100 1889400 1019800 0 0 0 0 0 0 0 0 0 26982 1972 28419 143257;143258;143259 144173;144174 144173 2 PNTLTLVHVR RLYFSTCPFRQPLARPNTLTLVHVRLPPGF QPLARPNTLTLVHVRLPPGFSASSTVEKPS R P N V R L 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 2 0 0 2 0 0 10 0 1148.6666 O75694;E9PF10 O75694 382 391 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.030718 47.198 By MS/MS 1 1.8002 1.5344 NaN 1 Median NaN NaN NaN 0 0 Median 1.8002 1.5344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3301000 1473600 1827400 0 0 0 3301000 1473600 1827400 0 0 0 0 0 0 0 0 0 0 0 0 26983 1692 28420 143260 144175 144175 1 PPFGQGYTQPGPGYR MTPPPSGPNPYARNRPPFGQGYTQPGPGYR PPFGQGYTQPGPGYR_______________ R P P Y R - 0 1 0 0 0 2 0 4 0 0 0 0 0 1 4 0 1 0 2 0 0 0 15 0 1620.7685 Q92734 Q92734 386 400 TFG Protein TFG yes yes 3 0.075763 7.4085 By MS/MS 1 0.58578 0.49537 NaN 1 Median NaN NaN NaN 0 0 Median 0.58578 0.49537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7570500 4390500 3180000 0 0 0 7570500 4390500 3180000 0 0 0 0 0 0 0 0 0 0 0 0 26984 3551 28421 143261 144176 144176 1 PPYTVVYFPVR ______________________________ ______________________________ M P P V R G 0 1 0 0 0 0 0 0 0 0 0 0 0 1 3 0 1 0 2 3 0 0 11 0 1336.718 P09211;A8MX94;A0A2R8Y5E5 P09211 2 12 GSTP1 Glutathione S-transferase P yes no 2;3 1.6643E-52 235.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 1 2 0.68085 0.65523 21.506 17 Median 0.67381 0.64273 16.801 6 0 Median 0.86846 0.72777 13.991 4 0 Median 0.66583 0.65207 19.383 4 0 Median 0.86534 0.7197 NaN 1 0 Median 0.49443 0.5328 54.846 2 0 Median NaN NaN NaN 0 0 Median 2262800000 1325700000 937050000 1985000000 1168700000 816310000 74329000 38548000 35781000 164320000 96146000 68171000 9509300 5117200 4392100 29652000 17254000 12398000 0 0 0 26985 1912 28422 143262;143263;143264;143265;143266;143267;143268;143269;143270;143271;143272;143273;143274;143275;143276;143277;143278 144177;144178;144179;144180;144181;144182;144183;144184;144185;144186;144187;144188;144189;144190;144191;144192;144193;144194;144195;144196;144197;144198;144199;144200;144201;144202;144203;144204;144205 144182 29 PPYTVVYFPVRGR ______________________________ ______________________________ M P P G R C 0 2 0 0 0 0 0 1 0 0 0 0 0 1 3 0 1 0 2 3 0 0 13 1 1549.8405 P09211;A8MX94 P09211 2 14 GSTP1 Glutathione S-transferase P yes no 3 0.033786 20.427 By MS/MS By matching 1 1 0.90931 0.86639 12.557 2 Median 0.74165 0.79277 NaN 1 0 Median 1.1149 0.94683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8014200 4080500 3933700 7313600 3749100 3564500 700550 331430 369120 0 0 0 0 0 0 0 0 0 0 0 0 26986 1912 28423 143279;143280 144206 144206 1 PQAPATVGLAFR GKTLGECGFTSQTARPQAPATVGLAFRADD TARPQAPATVGLAFRADDTFEALCIEPFSS R P Q F R A 3 1 0 0 0 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1226.6772 B8ZZU8;I3L0M9;Q15370 B8ZZU8 64 75 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 3.6707E-06 111.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.81461 0.69136 11.639 8 Median 0.79968 0.7722 4.7816 2 0 Median 0.83162 0.69136 1.1027 2 0 Median 0.78425 0.77995 22.132 2 0 Median 0.81176 0.63737 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87067 0.68216 NaN 1 0 Median 131350000 74793000 56557000 33560000 18679000 14881000 56057000 31970000 24087000 33069000 19309000 13760000 7013100 3898800 3114300 0 0 0 1650200 936450 713800 26987 651 28424 143281;143282;143283;143284;143285;143286;143287;143288 144207;144208;144209;144210;144211;144212 144208 6 PQNEYIELHR ______________________________ ______________________________ M P Q H R K 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1297.6415 O95478;A0A0A0MQZ6 O95478 2 11 NSA2 Ribosome biogenesis protein NSA2 homolog yes no 3 0.00032281 67.726 By MS/MS By matching 1 1 0.92623 0.86471 16.538 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72551 0.76928 NaN 1 0 Median 1.1825 0.97199 NaN 1 0 Median 6715600 3364400 3351200 0 0 0 0 0 0 0 0 0 0 0 0 3640900 2126900 1514000 3074600 1237500 1837200 26988 1775 28425 143289;143290 144213 144213 1 PQYQTWEEFSR ______________________________ ______________________________ M P Q S R A 0 1 0 0 0 2 2 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 11 0 1469.6575 P49458;Q6P2S0;Q659G3;E9PE20 P49458 2 12 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein yes no 2 0.00012086 147.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1 0.83954 0.82065 19.914 8 Median 0.82342 0.79772 NaN 1 0 Median 0.8839 0.73383 11.893 2 0 Median 1.0004 1.0124 13.878 3 2 Median 0.76312 0.60221 NaN 1 1 Median 0.84436 0.89433 NaN 1 0 Median NaN NaN NaN 0 0 Median 93865000 48791000 45074000 32933000 17758000 15175000 24728000 12137000 12591000 32425000 16725000 15700000 939840 508480 431360 2839000 1662400 1176700 0 0 0 26989 2384 28426;28427 143291;143292;143293;143294;143295;143296;143297;143298 144214;144215;144216;144217;144218;144219;144220;144221;144222;144223;144224 144217 11 PRDEDDADYKPK GYFVPPKEDIKPLKRPRDEDDADYKPKKIK LKRPRDEDDADYKPKKIKTEDTKKEKKRKL R P R P K K 1 1 0 4 0 0 1 0 0 0 0 2 0 0 2 0 0 0 1 0 0 0 12 2 1447.6579 P11387 P11387 139 150 TOP1 DNA topoisomerase 1 yes yes 3 0.060004 15.031 By MS/MS By MS/MS By matching 2 2 1 0.64628 0.72866 27.75 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49921 0.58506 48.892 2 0 Median 0.68645 0.74041 7.2442 2 0 Median 0.63029 0.72866 NaN 1 0 Median NaN NaN NaN 0 0 Median 2058200 1274300 783960 0 0 0 0 0 0 1283100 827630 455440 582470 328020 254450 192700 118620 74078 0 0 0 26990 1962 28428 143299;143300;143301;143302;143303 144225;144226;144227;144228 144227 4 PRPPGRPVSGHGMDSR VVDGEEGEPHSISPRPRPPGRPVSGHGMDS RPPGRPVSGHGMDSRPAMAIFELLDYIVNE R P R S R P 0 3 0 1 0 0 0 3 1 0 0 0 1 0 4 2 0 0 0 1 0 0 16 2 1701.8482 P36507;G5E9C7 P36507 298 313 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 3 0.032509 16.139 By MS/MS 1 0.61889 0.76333 NaN 1 Median NaN NaN NaN 0 0 Median 0.61889 0.76333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 381260 230790 150470 0 0 0 381260 230790 150470 0 0 0 0 0 0 0 0 0 0 0 0 26991 2256 28429 143304 144229 144229 1 PRPPTLLSQEQIK LQKNNKDRFCQLLWRPRPPTLLSQEQIKQI WRPRPPTLLSQEQIKQIKKDLKKYSKIFEQ R P R I K Q 0 1 0 0 0 2 1 0 0 1 2 1 0 0 3 1 1 0 0 0 0 0 13 1 1505.8566 P55884 P55884 706 718 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2;3 7.3845E-05 80.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 0.71955 0.71528 15.652 9 Median 0.69598 0.72521 23.661 3 0 Median 0.73053 0.67979 3.8164 3 0 Plateau 0.82199 0.9321 NaN 1 0 Median 0.72433 0.6927 4.5355 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93705000 53562000 40143000 21194000 12018000 9176200 54306000 30705000 23601000 9115800 5805900 3309900 9088300 5032000 4056300 0 0 0 0 0 0 26992 2504 28430 143305;143306;143307;143308;143309;143310;143311;143312;143313 144230;144231;144232;144233;144234;144235;144236;144237;144238;144239;144240;144241;144242;144243;144244;144245 144243 16 PRVAEWRYGPAR FSQSTGDIDKVTDTKPRVAEWRYGPARLWY DTKPRVAEWRYGPARLWYDMLGVPEDGSGF K P R A R L 2 3 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 1 1 1 0 0 12 2 1456.7688 P21675;Q8IZX4 P21675 336 347 TAF1;TAF1L Transcription initiation factor TFIID subunit 1;Transcription initiation factor TFIID subunit 1-like yes no 3 0.060903 14.876 By MS/MS By matching By matching By MS/MS By matching By matching 2 2 2 4 6 2 1.0784 1.1055 11.971 18 Median 1.1023 1.1672 23.267 2 0 Median 1.2119 1.1342 14.842 2 0 Median 0.95484 1.0186 8.9407 2 0 Median 1.1983 1.1058 13.346 4 0 Median 0.8901 1.08 8.4636 6 0 Median 1.229 1.2356 0.081541 2 0 Median 126350000 63177000 63174000 3378300 1641300 1737000 2332200 959340 1372800 23945000 13042000 10903000 58812000 26802000 32011000 35166000 19453000 15713000 2717900 1280000 1437900 26993 2091 28431 143314;143315;143316;143317;143318;143319;143320;143321;143322;143323;143324;143325;143326;143327;143328;143329;143330;143331 144246;144247;144248 144248 3 PSAAGINLMIGSTR PVNERMLNMIRQISRPSAAGINLMIGSTRY RPSAAGINLMIGSTRYGDGPRPPKMARYDN R P S T R Y 2 1 1 0 0 0 0 2 0 2 1 0 1 0 1 2 1 0 0 0 0 0 14 0 1386.7289 Q08211 Q08211 1141 1154 DHX9 ATP-dependent RNA helicase A yes yes 2 2.8824E-16 183 By matching By matching By MS/MS By MS/MS By matching 1 1 2 2 1 0.9557 1.0103 58.635 7 Median 0.80505 0.79858 NaN 1 0 Median 1.2064 1.0103 NaN 1 0 Median 0.56533 0.62156 74.265 2 1 Median 1.8061 1.6816 67.224 2 0 Median 0.80172 0.84435 NaN 1 0 Median NaN NaN NaN 0 0 Median 46913000 26118000 20795000 1851100 1121300 729820 9178900 4140400 5038500 29321000 17306000 12014000 2497800 1039000 1458800 4064500 2511300 1553100 0 0 0 26994 2736 28432;28433 143332;143333;143334;143335;143336;143337;143338 144249;144250;144251;144252;144253 144250 1426 5 PSDAASEAARPATSTLNR RLSWGKGSSGGSGAKPSDAASEAARPATST AASEAARPATSTLNRFSALQQAVPTESTDN K P S N R F 5 2 1 1 0 0 1 0 0 0 1 0 0 0 2 3 2 0 0 0 0 0 18 1 1813.8919 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 942 959 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 3 0.00047852 35.757 By matching By MS/MS 2 1 0.66597 0.67252 8.683 3 Median NaN NaN NaN 0 0 Median 0.685 0.67588 0.70595 2 0 Median NaN NaN NaN 0 0 Median 0.64231 0.58165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4943100 2857200 2085900 0 0 0 4005300 2317800 1687500 0 0 0 937810 539400 398400 0 0 0 0 0 0 26995 894 28434 143339;143340;143341 144254;144255 144254 2 PSDLHLQTGYK IRDNGDRIDLRFHPKPSDLHLQTGYKVERH FHPKPSDLHLQTGYKVERHMCDGDIVIFNR K P S Y K V 0 0 0 1 0 1 0 1 1 0 2 1 0 0 1 1 1 0 1 0 0 0 11 0 1257.6354 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 435 445 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.054241 14.446 By MS/MS By matching 1 1 1.2329 1.1019 13.769 2 Median NaN NaN NaN 0 0 Median 1.137 0.99969 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3369 1.2146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2290600 969690 1320900 0 0 0 1573400 714840 858560 0 0 0 717170 254840 462320 0 0 0 0 0 0 26996 486 28435 143342;143343 144256 144256 1 PSENLGQVLFGER EYTAFDFCQASEGKRPSENLGQVLFGERIE KRPSENLGQVLFGERIEPSPYKFTFNKKET R P S E R I 0 1 1 0 0 1 2 2 0 0 2 0 0 1 1 1 0 0 0 1 0 0 13 0 1444.731 Q99805 Q99805 92 104 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 2 2.0268E-06 98.105 By MS/MS 1 1.3328 1.3215 NaN 1 Median 1.3328 1.3215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7155300 2527500 4627800 7155300 2527500 4627800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26997 3770 28436 143344 144257 144257 1 PSEVNETILRPLNVEPPLTDLQK EMKRMHKAVQKDLPRPSEVNETILRPLNVE LRPLNVEPPLTDLQKSEELIKKEMITMLHY R P S Q K S 0 1 2 1 0 1 3 0 0 1 4 1 0 0 4 1 2 0 0 2 0 0 23 1 2601.4014 Q99459 Q99459 548 570 CDC5L Cell division cycle 5-like protein yes yes 3 0.0061751 22.996 By MS/MS By matching 1 1 0.75324 0.79497 39.095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.531 0.60297 NaN 1 0 Median 1.0685 1.0481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4426700 3030600 1396100 0 0 0 0 0 0 4331000 2990300 1340700 95704 40297 55408 0 0 0 0 0 0 26998 3745 28437 143345;143346 144258 144258 1 PSGEAFVELESEDEVK NGAQGIRFIYTREGRPSGEAFVELESEDEV SGEAFVELESEDEVKLALKKDRETMGHRYV R P S V K L 1 0 0 1 0 0 5 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 16 0 1763.8101 P31943;G8JLB6;E9PCY7;D6RBM0;E7EN40;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;D6RDL0 P31943 53 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 7.5634E-10 152.4 By MS/MS By matching 1 1 0.93327 0.85437 7.0337 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84351 0.81292 NaN 1 0 Median 1.0326 0.89794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15963000 8361800 7601600 0 0 0 0 0 0 15289000 8023800 7264800 674830 338000 336830 0 0 0 0 0 0 26999 1136 28438 143347;143348 144259;144260;144261;144262;144263 144261 5 PSGEEVLQDIQVMLK EEAAKEVADEVTRPRPSGEEVLQDIQVMLK PSGEEVLQDIQVMLKSDASPSSIRSLKSDM R P S L K S 0 0 0 1 0 2 2 1 0 1 2 1 1 0 1 1 0 0 0 2 0 0 15 0 1684.8706 P33992;B1AHA9 P33992 115 129 MCM5 DNA replication licensing factor MCM5 yes no 2 3.1957E-09 116.77 By MS/MS By MS/MS By matching By matching 1 2 2 1 0.66505 0.68428 19.422 6 Median 0.62934 0.63496 NaN 1 0 Median 0.77409 0.68429 35.605 2 0 Median 0.649 0.68428 9.2115 2 0 Median 0.9768 0.85885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13675000 6924700 6750700 1198600 676820 521760 10766000 5234100 5531900 1613000 961740 651230 97803 52001 45803 0 0 0 0 0 0 27000 2224 28439 143349;143350;143351;143352;143353;143354 144264;144265;144266 144266 3 PSGLLAQER QVNVRMDSFDEDLARPSGLLAQERKLCRDL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R P S E R K 1 1 0 0 0 1 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 969.52434 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 583 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.004116 76.679 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.114 0.9388 1.2613 3 Median NaN NaN NaN 0 0 Median 1.114 0.9388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1235 0.95948 NaN 1 1 Median 0.88858 0.9387 NaN 1 0 Median NaN NaN NaN 0 0 Median 9877500 4457700 5419700 0 0 0 5541900 2453500 3088400 0 0 0 869530 374770 494760 3466000 1629500 1836600 0 0 0 27001 439 28440 143355;143356;143357;143358 144267;144268;144269 144267 3 PSHLTNKFEDK VNEYDDNGEGIILFRPSHLTNKFEDKTVAY ILFRPSHLTNKFEDKTVAYTEQKMTSGKIK R P S D K T 0 0 1 1 0 0 1 0 1 0 1 2 0 1 1 1 1 0 0 0 0 0 11 1 1314.6568 P30101 P30101 208 218 PDIA3 Protein disulfide-isomerase A3 yes yes 2;3 0.001036 50.207 By matching By MS/MS By matching 2 2 2 0.95262 0.95275 14.83 6 Median 1.051 1.0249 31.384 2 0 Median 1.0438 0.9826 5.7564 2 0 Median 0.88609 0.94147 3.0788 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5501400 2899100 2602300 1069200 626640 442540 4084600 2103500 1981100 347580 169000 178580 0 0 0 0 0 0 0 0 0 27002 2189 28441 143359;143360;143361;143362;143363;143364 144270;144271 144270 2 PSILTYQYAEDLIR KVTGKELRYEGLMGKPSILTYQYAEDLIRR KPSILTYQYAEDLIRRQAERRGWAAPIRKL K P S I R R 1 1 0 1 0 1 1 0 0 2 2 0 0 0 1 1 1 0 2 0 0 0 14 0 1680.8723 Q9BXW7 Q9BXW7 280 293 CECR5 Cat eye syndrome critical region protein 5 yes yes 2 5.1659E-06 94.297 By MS/MS By MS/MS 1 2 1.1343 1.0186 14.909 3 Median NaN NaN NaN 0 0 Median 1.1885 1.0186 NaN 1 0 Median 0.96824 0.98818 20.939 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3400000 1571800 1828200 0 0 0 2047700 931990 1115700 1352300 639860 712440 0 0 0 0 0 0 0 0 0 27003 3882 28442 143365;143366;143367 144272;144273;144274;144275 144274 4 PSKGPLQSVQVFGR ______________________________ MPSKGPLQSVQVFGRKKTATAVAHCKRGNG M P S G R K 0 1 0 0 0 2 0 2 0 0 1 1 0 1 2 2 0 0 0 2 0 0 14 1 1498.8256 P62249;M0R210;M0R3H0;Q6IPX4 P62249 2 15 RPS16 40S ribosomal protein S16 yes no 2;3 1.0424E-44 188.96 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 2 1 1 2 0.94411 0.89737 10.359 11 Median 0.94411 0.924 6.7728 5 5 Median 1.0572 0.93311 5.9826 2 0 Median 0.84198 0.87434 NaN 1 0 Median 1.0971 0.97113 NaN 1 0 Median 0.72169 0.78605 18.621 2 1 Median NaN NaN NaN 0 0 Median 210630000 100070000 110560000 191070000 89566000 101510000 5305300 2738800 2566500 8476500 4608600 3867900 494180 272430 221750 5283400 2881800 2401600 0 0 0 27004 2574 28443 143368;143369;143370;143371;143372;143373;143374;143375;143376;143377;143378 144276;144277;144278;144279;144280;144281;144282;144283;144284;144285;144286;144287;144288 144280 13 PSLQMNTSIWYNR GEACRGHNRSPLVRRPSLQMNTSIWYNRSD RRPSLQMNTSIWYNRSDVFEAWRLLLTSAP R P S N R S 0 1 2 0 0 1 0 0 0 1 1 0 1 0 1 2 1 1 1 0 0 0 13 0 1608.7719 P54802 P54802 521 533 NAGLU Alpha-N-acetylglucosaminidase;Alpha-N-acetylglucosaminidase 82 kDa form;Alpha-N-acetylglucosaminidase 77 kDa form yes yes 3 0.063196 20.381 By MS/MS 1 1.9484 1.7093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9484 1.7093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 566170 165570 400600 0 0 0 0 0 0 0 0 0 566170 165570 400600 0 0 0 0 0 0 27005 2487 28444 143379 144289 144289 1 PSLSLGTITDEEMK VCPPHLKTCYPLESRPSLSLGTITDEEMKT RPSLSLGTITDEEMKTGDPQETLRRASMQP R P S M K T 0 0 0 1 0 0 2 1 0 1 2 1 1 0 1 2 2 0 0 0 0 0 14 0 1519.744 A0A087WY61;Q14980 Q14980 1944 1957 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 2.2819E-07 134.13 By matching By matching By MS/MS By MS/MS 1 2 2 1 0.78812 0.7488 33.905 6 Median 0.44214 0.4203 NaN 1 0 Median 0.84863 0.7488 4.615 2 0 Median 0.8229 0.90918 40.536 2 0 Median NaN NaN NaN 0 0 Median 0.75134 0.78839 NaN 1 1 Median NaN NaN NaN 0 0 Median 37112000 18912000 18199000 2299000 1048600 1250400 3591900 1958400 1633500 26934000 13526000 13408000 0 0 0 4286300 2378800 1907500 0 0 0 27006 2905;77 28445;28446 143380;143381;143382;143383;143384;143385 144290;144291;144292;144293 144293 36 4 PSMGLVANTK AFLLSILAFVDMVARPSMGLVANTKPIRPR DMVARPSMGLVANTKPIRPRIQYFFAASVV R P S T K P 1 0 1 0 0 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 10 0 1016.5325 P53985;Q5T8R5 P53985 314 323 SLC16A1 Monocarboxylate transporter 1 yes no 2 0.021036 52.278 By MS/MS 1 1.0717 0.94894 NaN 1 Median NaN NaN NaN 0 0 Median 1.0717 0.94894 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11532000 4901300 6630900 0 0 0 11532000 4901300 6630900 0 0 0 0 0 0 0 0 0 0 0 0 27007 2476 28447 143386 144294 144294 1 PSMGLVANTKPIRPR AFLLSILAFVDMVARPSMGLVANTKPIRPR PSMGLVANTKPIRPRIQYFFAASVVANGVC R P S P R I 1 2 1 0 0 0 0 1 0 1 1 1 1 0 3 1 1 0 0 1 0 0 15 2 1635.9243 P53985;Q5T8R5 P53985 314 328 SLC16A1 Monocarboxylate transporter 1 yes no 4 0.00010194 53.995 By matching By MS/MS By matching 1 1 1 0.87577 0.84451 16.671 3 Median 0.81054 0.78192 NaN 1 0 Median 0.87577 0.84451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91326 1.0762 NaN 1 0 Median NaN NaN NaN 0 0 Median 13421000 7120300 6300800 1433000 842780 590270 9182300 4753500 4428800 0 0 0 0 0 0 2805700 1524000 1281700 0 0 0 27008 2476 28448 143387;143388;143389 144295 144295 1 PSNIGQAQPIIDQLAEEAR MNSVMLGGRNIKVGRPSNIGQAQPIIDQLA GQAQPIIDQLAEEARAFNRIYVASVHQDLS R P S A R A 3 1 1 1 0 3 2 1 0 3 1 0 0 0 2 1 0 0 0 0 0 0 19 0 2049.0491 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7 A0A0J9YVP6 180 198 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 3.0357E-10 92.474 By MS/MS By MS/MS 2 4 0.72492 0.68067 7.7205 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69355 0.70434 3.7167 2 0 Median 0.76701 0.65802 8.5336 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17259000 9856500 7402300 0 0 0 0 0 0 15537000 8905800 6631400 1721700 950750 770920 0 0 0 0 0 0 27009 284 28449 143390;143391;143392;143393;143394;143395 144296;144297;144298;144299;144300;144301 144299 6 PSPLLLQYSVK HMTMKQIWLSRWFGKPSPLLLQYSVKEKRR WFGKPSPLLLQYSVKEKRR___________ K P S V K E 0 0 0 0 0 1 0 0 0 0 3 1 0 0 2 2 0 0 1 1 0 0 11 0 1243.7176 Q9BSM1 Q9BSM1 245 255 PCGF1 Polycomb group RING finger protein 1 yes yes 2 0.00084869 62.303 By MS/MS By matching By matching 1 1 1 0.92368 0.77048 7.3486 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72481 0.68742 NaN 1 0 Median 0.96361 0.77048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92368 0.78858 NaN 1 0 Median 4266900 2406800 1860100 0 0 0 0 0 0 4092600 2316200 1776400 82393 39008 43384 0 0 0 91962 51625 40337 27010 3819 28450 143396;143397;143398 144302 144302 1 PSQMEHAMETMMFTFHK ______________________________ QMEHAMETMMFTFHKFAGDKGYLTKEDLRV M P S H K F 1 0 0 0 0 1 2 0 2 0 0 1 4 2 1 1 2 0 0 0 0 0 17 0 2081.8831 P60903 P60903 2 18 S100A10 Protein S100-A10 yes yes 3;4 5.6203E-06 78.661 By MS/MS By matching 11 1 1.0358 0.98908 7.6218 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0342 0.98885 4.6164 11 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4738 1.2062 NaN 1 0 Median 162080000 77066000 85011000 0 0 0 0 0 0 161730000 76902000 84825000 0 0 0 0 0 0 349660 164100 185560 27011 2531 28451;28452;28453;28454 143399;143400;143401;143402;143403;143404;143405;143406;143407;143408;143409;143410 144303;144304;144305;144306;144307;144308;144309;144310;144311;144312;144313;144314;144315;144316 144312 1213;1214;1215;1216 14 PSQVVAETR HWQILPGDPFDNSSRPSQVVAETRKRKGLK FDNSSRPSQVVAETRKRKGLKEGIPALDNF R P S T R K 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 0 0 2 0 0 9 0 985.51926 P13639 P13639 831 839 EEF2 Elongation factor 2 yes yes 2 0.0018623 76.827 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.89636 0.7982 17.179 7 Median 0.95729 0.95911 1.9224 2 0 Median 0.86308 0.7639 5.3157 3 0 Median 1.0233 1.0721 NaN 1 0 Median 0.78911 0.67816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17162000 9509800 7652600 932820 436030 496790 14843000 8325600 6517700 396750 188700 208060 989580 559530 430050 0 0 0 0 0 0 27012 1992 28455 143411;143412;143413;143414;143415;143416;143417 144317;144318;144319;144320;144321;144322 144321 6 PSSEVIKDANLYISGLPR GLRLQSKTIKVSYARPSSEVIKDANLYISG EVIKDANLYISGLPRTMTQKDVEDMFSRFG R P S P R T 1 1 1 1 0 0 1 1 0 2 2 1 0 0 2 3 0 0 1 1 0 0 18 1 1958.0473 Q15717;M0QZR9;M0R055 Q15717 98 115 ELAVL1 ELAV-like protein 1 yes no 3 0.00084627 32.55 By matching By MS/MS By matching By MS/MS 1 1 1 3 0.77391 0.82616 17.284 6 Median 0.73652 0.72703 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8507 0.93616 NaN 1 0 Median 0.95158 0.89801 NaN 1 0 Median 0.7298 0.79579 20.293 3 0 Median NaN NaN NaN 0 0 Median 18921000 10420000 8500500 1059500 494500 565000 0 0 0 1508700 769200 739510 280580 138250 142330 16072000 9018100 7053700 0 0 0 27013 2964 28456 143418;143419;143420;143421;143422;143423 144323;144324 144324 2 PSSINYMVAPVTGNDVGIR AVVSGAPLQGQLVARPSSINYMVAPVTGND NYMVAPVTGNDVGIRRAEIKQGIREVILCK R P S I R R 1 1 2 1 0 0 0 2 0 2 0 0 1 0 2 2 1 0 1 3 0 0 19 0 1988.999 G5EA09;O00560 O00560 86 104 SDCBP Syntenin-1 no no 2;3 1.9416E-18 119.39 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.94087 0.89622 19.478 6 Median 0.80763 0.75885 7.42 2 0 Median 1.1913 1.0043 NaN 1 0 Median 0.69181 0.68447 NaN 1 1 Median 1.2667 1.0626 NaN 1 0 Median 1.0438 1.0305 NaN 1 0 Median NaN NaN NaN 0 0 Median 30304000 15955000 14349000 20449000 10965000 9483300 1853800 968750 885050 4334600 2238400 2096200 711010 312730 398270 2956300 1470100 1486100 0 0 0 27014 1132;1470 28457 143424;143425;143426;143427;143428;143429 144325;144326;144327;144328;144329;144330;144331;144332 144326 8 PSSLNLPQAAAEK P S E K 3 0 1 0 0 1 1 0 0 0 2 1 0 0 2 2 0 0 0 0 0 0 13 0 1324.6987 REV__P35712 yes yes 2;3 0.00068298 67.704 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 13 18 9 8 4 13 1.3517 1.1428 77.527 65 Median 1.1597 1.0544 9.2474 13 0 Median 1.1937 0.99365 5.8387 18 1 Median 1.3849 1.3445 12.304 9 0 Median 1.8791 1.5866 16.925 8 0 Median 14.049 13.452 1.6359 4 0 Linear 5.3596 4.3682 16.209 13 0 Median 4961700000 2045800000 2915900000 1182000000 528530000 653470000 2947900000 1329000000 1618900000 216100000 85654000 130450000 159440000 54212000 105220000 250320000 16910000 233410000 205990000 31538000 174450000 + 27015 4537 28458 143430;143431;143432;143433;143434;143435;143436;143437;143438;143439;143440;143441;143442;143443;143444;143445;143446;143447;143448;143449;143450;143451;143452;143453;143454;143455;143456;143457;143458;143459;143460;143461;143462;143463;143464;143465;143466;143467;143468;143469;143470;143471;143472;143473;143474;143475;143476;143477;143478;143479;143480;143481;143482;143483;143484;143485;143486;143487;143488;143489;143490;143491;143492;143493;143494 144333;144334;144335;144336;144337;144338;144339;144340;144341;144342;144343;144344;144345;144346;144347;144348;144349;144350;144351;144352;144353;144354;144355;144356;144357;144358;144359;144360;144361;144362;144363;144364;144365;144366;144367;144368;144369;144370;144371;144372;144373;144374;144375;144376;144377;144378;144379;144380;144381;144382;144383;144384;144385;144386;144387;144388 144362 56 PSSPETATKQPSSPYEDK GDAPFSEPGTTSTQRPSSPETATKQPSSPY PETATKQPSSPYEDKDKDKKEKSATRPSPS R P S D K D 1 0 0 1 0 1 2 0 0 0 0 2 0 0 4 4 2 0 1 0 0 0 18 1 1947.9062 Q9UQ35;I3L4D8;I3L1I8;I3L182;A0A087X1W1 Q9UQ35 321 338 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 0.064252 9.4742 By MS/MS 1 1.1982 1.1414 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1982 1.1414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39325000 16827000 22498000 0 0 0 0 0 0 0 0 0 39325000 16827000 22498000 0 0 0 0 0 0 27016 4359 28459 143495 144389 144389 1 PSSSPVIFAGGQDR SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K P S D R Y 1 1 0 1 0 1 0 2 0 1 0 0 0 1 2 3 0 0 0 1 0 0 14 0 1416.6997 Q15366;H3BSS4 Q15366 186 199 PCBP2 Poly(rC)-binding protein 2 yes no 2 7.1354E-43 221.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 2 2 2 0.88028 0.80112 39.68 14 Median 0.62841 0.59419 16.997 3 2 Median 1.0005 0.86073 14.581 2 0 Median 0.80943 0.83225 20.459 4 1 Median 1.2537 1.0543 51.317 2 0 Median 2.2377 2.2339 NaN 1 1 Median 1.246 1.009 43.874 2 1 Median 206230000 111240000 94988000 38109000 22886000 15222000 21839000 12632000 9206800 114640000 64487000 50151000 10354000 5388400 4965100 5702100 1640600 4061500 15587000 4206500 11381000 27017 2942 28460 143496;143497;143498;143499;143500;143501;143502;143503;143504;143505;143506;143507;143508;143509;143510 144390;144391;144392;144393;144394;144395;144396;144397;144398;144399;144400;144401;144402;144403;144404;144405;144406;144407 144394 18 PSSSPVIFAGGQLTK SQSPPKGVTIPYRPKPSSSPVIFAGGQLTK PSSSPVIFAGGQLTKLHQLAMQQSHFPMTH K P S T K L 1 0 0 0 0 1 0 2 0 1 1 1 0 1 2 3 1 0 0 1 0 0 15 0 1487.7984 H3BRU6;F8VZX2 H3BRU6 167 181 PCBP2 yes no 2 8.8658E-10 117.79 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.91029 0.79713 8.332 4 Median 0.7513 0.70232 NaN 1 0 Median 0.95472 0.80904 NaN 1 0 Median 0.89022 0.8562 NaN 1 0 Median 0.93082 0.7854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19303000 10396000 8907000 7727600 4382700 3344900 1117900 586540 531360 8225100 4236500 3988600 2232500 1190500 1042100 0 0 0 0 0 0 27018 1077 28461 143511;143512;143513;143514 144408;144409;144410 144409 3 PSSVPHGAGYELLIQK SGTVPVLFCFSVFARPSSVPHGAGYELLIQ SSVPHGAGYELLIQKFLSLYGDQIDMHRKF R P S Q K F 1 0 0 0 0 1 1 2 1 1 2 1 0 0 2 2 0 0 1 1 0 0 16 0 1694.8992 Q96CN7;D6RGE2 Q96CN7 38 53 ISOC1 Isochorismatase domain-containing protein 1 yes no 3 0.0074813 35.1 By MS/MS 1 0.74709 0.67773 NaN 1 Median 0.74709 0.67773 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33671000 19276000 14395000 33671000 19276000 14395000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27019 3619 28462 143515 144411 144411 1 PSTAYAPEGSPILMPAYTR EMRSAVLSEPVLFLKPSTAYAPEGSPILMP YAPEGSPILMPAYTRNLHHELELGVVMGKR K P S T R N 3 1 0 0 0 0 1 1 0 1 1 0 1 0 4 2 2 0 2 0 0 0 19 0 2020.9928 Q6P587 Q6P587 48 66 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2 1.1219E-07 64.65 By MS/MS By matching 1 1 0.61311 0.54047 19.22 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4966 0.47179 NaN 1 0 Median 0.75695 0.61915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3286100 1956400 1329700 0 0 0 0 0 0 2974200 1777000 1197200 311910 179430 132480 0 0 0 0 0 0 27020 3160 28463 143516;143517 144412 144412 1 PSVYIPEFIAANQSAR LQEQLWPHMEALRPRPSVYIPEFIAANQSA SVYIPEFIAANQSARADNLIPGSRAQQLEQ R P S A R A 3 1 1 0 0 1 1 0 0 2 0 0 0 1 2 2 0 0 1 1 0 0 16 0 1761.905 Q9NPH2 Q9NPH2 176 191 ISYNA1 Inositol-3-phosphate synthase 1 yes yes 2 0.0009666 39.917 By MS/MS 1 0.40871 0.39275 NaN 1 Median 0.40871 0.39275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7078900 4955500 2123400 7078900 4955500 2123400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27021 4052 28464 143518 144413;144414 144413 2 PSYQEEAVTK VDYISGGGFSNVFPRPSYQEEAVTKFLSSS NVFPRPSYQEEAVTKFLSSSPHLPPSSYFN R P S T K F 1 0 0 0 0 1 2 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 10 0 1150.5506 A0A2R8YGD1;O14773;A0A2R8Y7U1;A0A2R8YD45 A0A2R8YGD1 326 335 TPP1 Tripeptidyl-peptidase 1 yes no 2 0.00036109 82.749 By matching By MS/MS By matching By matching 1 2 1 1 0.79857 0.83205 43.26 5 Median 0.51665 0.50858 NaN 1 0 Median 0.93538 0.80399 34.268 2 0 Median 0.79857 0.83205 NaN 1 0 Median 1.7374 1.5502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4970300 2360400 2609900 909310 627580 281730 2714800 1103600 1611200 757440 416060 341370 588730 213190 375540 0 0 0 0 0 0 27022 402 28465 143519;143520;143521;143522;143523 144415 144415 1 PTDGAASELSSIQNLNR LVESDKEEQPDFLPRPTDGAASELSSIQNL DGAASELSSIQNLNRALRETLLAQPAAGQA R P T N R A 2 1 2 1 0 1 1 1 0 1 2 0 0 0 1 3 1 0 0 0 0 0 17 0 1771.8701 Q9NU22 Q9NU22 4004 4020 MDN1 Midasin yes yes 2;3 2.3103E-64 236.61 By matching By MS/MS By MS/MS 1 2 1 0.98448 0.98478 25.631 4 Median 0.90405 1.0276 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1606 1.23 37.463 2 1 Median 1.0721 0.93285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28885000 13642000 15243000 1806000 724830 1081200 0 0 0 26037000 12415000 13622000 1041800 502130 539640 0 0 0 0 0 0 27023 4112 28466 143524;143525;143526;143527 144416;144417;144418;144419;144420 144417 5 PTEFLWLTR P T T R 0 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 2 1 0 0 0 0 9 0 1161.6182 REV__Q702N8 yes yes 2 0.064534 27.13 By MS/MS 3 0.72914 0.80091 26.901 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72914 0.80091 26.901 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18430000 10054000 8376000 0 0 0 0 0 0 18430000 10054000 8376000 0 0 0 0 0 0 0 0 0 + 27024 4547 28467 143528;143529;143530 144421 144421 1 PTFGITWR NAKPALDIWPYPSPRPTFGITWRYRLQTVK WPYPSPRPTFGITWRYRLQTVKSLAGVSLM R P T W R Y 0 1 0 0 0 0 0 1 0 1 0 0 0 1 1 0 2 1 0 0 0 0 8 0 976.51305 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1887 1894 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0033382 98.997 By MS/MS By matching By matching By matching 3 3 1 1 1.1827 1.0375 14.711 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94007 1.0302 12.787 3 0 Median 1.1865 1.039 7.9668 3 0 Plateau 1.3701 1.4239 NaN 1 0 Median 1.4458 1.191 NaN 1 0 Median 15600000 7487300 8112800 0 0 0 0 0 0 14005000 6684500 7320100 494320 217620 276700 1015500 547190 468340 85759 38053 47706 27025 2762 28468 143531;143532;143533;143534;143535;143536;143537;143538 144422;144423;144424;144425 144423 4 PTGGIIDMASSTFQGIK FFKGVGKGLVGAVARPTGGIIDMASSTFQG GGIIDMASSTFQGIKRATETSEVESLRPPR R P T I K R 1 0 0 1 0 1 0 3 0 3 0 1 1 1 1 2 2 0 0 0 0 0 17 0 1721.8658 Q96RL7 Q96RL7 3009 3025 VPS13A Vacuolar protein sorting-associated protein 13A yes yes 2 0.050521 32.946 By MS/MS 1 0.91731 0.806 NaN 1 Median NaN NaN NaN 0 0 Median 0.91731 0.806 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1229600 550140 679430 0 0 0 1229600 550140 679430 0 0 0 0 0 0 0 0 0 0 0 0 27026 3726 28469 143539 144426 144426 1 PTGGVGAVALLIGPNAPLIFER VVAGDIAVYATGNARPTGGVGAVALLIGPN VALLIGPNAPLIFERGLRGTHMQHAYDFYK R P T E R G 3 1 1 0 0 0 1 4 0 2 3 0 0 1 3 0 1 0 0 2 0 0 22 0 2161.2259 Q01581 Q01581 170 191 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 2 1.2176E-06 46.408 By MS/MS 1 0.71809 0.63033 NaN 1 Median NaN NaN NaN 0 0 Median 0.71809 0.63033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 614480 339760 274720 0 0 0 614480 339760 274720 0 0 0 0 0 0 0 0 0 0 0 0 27027 2687 28470 143540 144427 144427 1 PTPVKPNYALK ARAQPTPSSSATQSKPTPVKPNYALKFTLA TQSKPTPVKPNYALKFTLAGHTKAVSSVKF K P T L K F 1 0 1 0 0 0 0 0 0 0 1 2 0 0 3 0 1 0 1 1 0 0 11 1 1226.7023 P61964;V9GZ59;V9GYQ5 P61964 28 38 WDR5 WD repeat-containing protein 5 yes no 3 0.019736 25.474 By matching By MS/MS By MS/MS 1 1 1 0.65547 0.626 7.3644 3 Median NaN NaN NaN 0 0 Median 0.68802 0.626 NaN 1 0 Median 0.62057 0.67625 NaN 1 0 Median 0.65547 0.58367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4202100 2724200 1477800 0 0 0 626890 347860 279030 2480000 1709300 770740 1095100 667060 428070 0 0 0 0 0 0 27028 2564 28471 143541;143542;143543 144428;144429 144429 2 PTQSVQSQALHYR IRDEAGHGDPRPEPRPTQSVQSQALHYRNR PRPTQSVQSQALHYRNRERFATIKSASLVT R P T Y R N 1 1 0 0 0 3 0 0 1 0 1 0 0 0 1 2 1 0 1 1 0 0 13 0 1513.7637 Q9H2K8 Q9H2K8 418 430 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 3 0.00068617 61.038 By MS/MS By MS/MS 1 1 1.039 0.99131 15.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0367 1.1081 NaN 1 0 Median 1.0413 0.88682 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4143900 2240700 1903300 0 0 0 0 0 0 2226400 1210400 1016000 1917600 1030300 887280 0 0 0 0 0 0 27029 3944 28472 143544;143545 144430;144431;144432 144432 3 PTVEELYR ______________________________ ______________________________ M P T Y R N 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 8 0 1005.5131 G3V1C3;Q9BZZ5;E9PQK6 G3V1C3 2 9 API5 Apoptosis inhibitor 5 yes no 2 6.9134E-05 157.21 By matching By MS/MS By MS/MS By matching By MS/MS 1 3 4 1 1 1.0049 0.86482 20.874 9 Median NaN NaN NaN 0 0 Median 1.0049 0.87136 NaN 1 0 Median 0.8651 0.85729 11.686 3 0 Median 1.0324 0.80808 10.389 4 0 Median 1.4324 1.4376 NaN 1 0 Median NaN NaN NaN 0 0 Median 95692000 46675000 49017000 0 0 0 4051400 1862500 2188900 64122000 32431000 31691000 20052000 9584400 10468000 7466100 2797000 4669100 0 0 0 27030 1103 28473 143546;143547;143548;143549;143550;143551;143552;143553;143554;143555 144433;144434;144435;144436;144437;144438 144435 6 PTVSSPKMLQR PAKPTNGGQPYASPRPTVSSPKMLQRKRKD ASPRPTVSSPKMLQRKRKDRGGSPSMSSAQ R P T Q R K 0 1 0 0 0 1 0 0 0 0 1 1 1 0 2 2 1 0 0 1 0 0 11 1 1242.6754 Q8IYX3 Q8IYX3 368 378 CCDC116 Coiled-coil domain-containing protein 116 yes yes 2 0.056275 41.448 By MS/MS 1 0.88603 0.99482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88603 0.99482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13720000 6852700 6867600 0 0 0 0 0 0 13720000 6852700 6867600 0 0 0 0 0 0 0 0 0 27031 3347 28474 143556 144439 144439 1713 1 PTWGNHTPIFR LQRFFKFSRDVFLPKPTWGNHTPIFRDAGM FLPKPTWGNHTPIFRDAGMQLQGYRYYDPK K P T F R D 0 1 1 0 0 0 0 1 1 1 0 0 0 1 2 0 2 1 0 0 0 0 11 0 1324.6677 P00505 P00505 160 170 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2;3 9.0605E-22 199.46 By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 1 0.86186 0.86996 16.461 7 Median 0.77534 0.86784 13.43 4 0 Linear 1.145 0.99712 NaN 1 0 Median 0.86186 0.94315 NaN 1 0 Median 1.0493 0.93092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 156040000 80426000 75610000 99197000 52751000 46446000 30434000 13676000 16758000 25362000 13572000 11790000 1043600 427710 615940 0 0 0 0 0 0 27032 1823 28475 143557;143558;143559;143560;143561;143562;143563 144440;144441;144442;144443;144444;144445;144446;144447;144448;144449 144442 10 PTYTNLNR EAIYDICRRNLDIERPTYTNLNRLISQIVS RNLDIERPTYTNLNRLISQIVSSITASLRF R P T N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 1 0 0 0 8 0 977.49304 Q9BQE3;F5H5D3;F8VVB9;Q9H853;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 P68363 222 229 TUBA1C;TUBA1B;TUBA4B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1C chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 0.0035231 91.041 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0506 0.95003 8.7797 4 Median 1.0629 1.0532 NaN 1 0 Median 1.0384 0.87437 NaN 1 0 Median 0.90841 0.90058 NaN 1 0 Median 1.1445 1.0022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11635000 5449500 6185600 1371400 651150 720220 8785300 4112000 4673300 1189800 579360 610420 288620 106960 181660 0 0 0 0 0 0 27033 2633;3212;1034 28476 143564;143565;143566;143567 144450;144451;144452 144452 3 PVAFLAYR PPSVGSMTDEHGHQRPVAFLAYRVNGQYIM DEHGHQRPVAFLAYRVNGQYIMEGLASSFL R P V Y R V 2 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 8 0 935.52289 Q9NRP0;A0A087WUD3 Q9NRP0 71 78 OSTC Oligosaccharyltransferase complex subunit OSTC yes no 2 0.024981 43 By MS/MS By matching 1 1 1.0332 0.93759 2.1095 2 Median 0.97364 0.95168 NaN 1 0 Median 1.0964 0.92371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631300 1317600 1313700 2013400 1014400 998970 617910 303220 314680 0 0 0 0 0 0 0 0 0 0 0 0 27034 4086 28477 143568;143569 144453 144453 1 PVAGSELPR ______________________________ ______________________________ M P V P R R 1 1 0 0 0 0 1 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 9 0 924.50288 P04818 P04818 2 10 TYMS Thymidylate synthase yes yes 2 0.0014585 81.296 By MS/MS By MS/MS By MS/MS 1 1 1 0.7603 0.63577 14.746 3 Median 0.85839 0.80116 NaN 1 0 Median 0.73019 0.60905 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7603 0.63577 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13339000 6289700 7049500 7414300 3000000 4414300 4582200 2496600 2085700 0 0 0 1342600 793110 549520 0 0 0 0 0 0 27035 1852 28478 143570;143571;143572 144454;144455;144456;144457 144455 4 PVALALQQALGQELAR FPLSPDPRWQSSSPRPVALALQQALGQELA VALALQQALGQELARVVQGSPEVPGITVRV R P V A R V 4 1 0 0 0 3 1 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 16 0 1676.9574 Q8N201 Q8N201 1375 1390 INTS1 Integrator complex subunit 1 yes yes 2 8.4416E-06 70.977 By MS/MS 1 1.2254 1.3615 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2254 1.3615 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1376600 592640 783950 0 0 0 0 0 0 1376600 592640 783950 0 0 0 0 0 0 0 0 0 27036 3360 28479 143573 144458 144458 1 PVANAGGSKPLTFQIQGNK GEVVSIGQLASLAQRPVANAGGSKPLTFQI AGGSKPLTFQIQGNKLTLTGAQVRQLAVGQ R P V N K L 2 0 2 0 0 2 0 3 0 1 1 2 0 1 2 1 1 0 0 1 0 0 19 1 1926.0323 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 1197 1215 SRCAP Helicase SRCAP yes no 3 0.00069223 31.115 By MS/MS By matching 1 2 0.86944 0.80986 18.707 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59575 0.67657 NaN 1 0 Median 0.91742 0.89245 13.734 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6149200 3561200 2587900 0 0 0 0 0 0 4660200 2792800 1867400 1488900 768420 720520 0 0 0 0 0 0 27037 3199 28480 143574;143575;143576 144459;144460 144460 2 PVAPSGTALSTTSSK ASNTTPGEPAASSSRPVAPSGTALSTTSSK PVAPSGTALSTTSSKLETPPSKLGELLFPS R P V S K L 2 0 0 0 0 0 0 1 0 0 1 1 0 0 2 4 3 0 0 1 0 0 15 0 1402.7304 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;B7ZAV2;E9PKD2 A0A494C1F2 1283 1297 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.026105 39.148 By MS/MS 1 1.3887 1.209 NaN 1 Median NaN NaN NaN 0 0 Median 1.3887 1.209 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1000700 422250 578480 0 0 0 1000700 422250 578480 0 0 0 0 0 0 0 0 0 0 0 0 27038 467 28481 143577 144461 144461 1 PVAVALDTK RTATESFASDPILYRPVAVALDTKGPEIRT DPILYRPVAVALDTKGPEIRTGLIKGSGTA R P V T K G 2 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 2 0 0 9 0 912.52803 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 107 115 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 4.134E-07 164.72 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.97739 0.92948 10.441 8 Median 0.97739 0.96121 6.68 3 0 Median 0.91899 0.81413 3.5719 3 1 Median 0.97738 0.99768 NaN 1 0 Median 1.0968 0.94429 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 142230000 70856000 71377000 18355000 8780300 9574700 119130000 59724000 59407000 3381800 1735900 1646000 1365900 616340 749560 0 0 0 0 0 0 27039 2005;1237 28482 143578;143579;143580;143581;143582;143583;143584;143585 144462;144463;144464;144465;144466;144467;144468;144469 144466 8 PVAVGPYGQSQPSCFDR ______________________________ AVGPYGQSQPSCFDRVKMGFVMGCAVGMAA M P V D R V 1 1 0 1 1 2 0 2 0 0 0 0 0 1 3 2 0 0 1 2 0 0 17 0 1863.8574 P60602 P60602 2 18 ROMO1 Reactive oxygen species modulator 1 yes yes 2;3 2.1605E-05 75.695 By MS/MS 3 0.94205 0.76195 11.564 3 Median NaN NaN NaN 0 0 Median 0.94205 0.76195 11.564 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5287300 2506200 2781100 0 0 0 5287300 2506200 2781100 0 0 0 0 0 0 0 0 0 0 0 0 27040 2527 28483 143586;143587;143588 144470;144471;144472;144473;144474 144472 5 PVGSLAGIGEVLGK SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK KPVGSLAGIGEVLGKKLEERGFDKAYVVLG K P V G K K 1 0 0 0 0 0 1 4 0 1 2 1 0 0 1 1 0 0 0 2 0 0 14 0 1295.7449 O75531 O75531 19 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 0.0010179 51.927 By matching By MS/MS By matching 1 1 1 0.91953 0.89604 2.3842 3 Median 0.91953 0.90725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84775 0.89604 NaN 1 0 Median 1.0532 0.86639 NaN 1 0 Median 9355700 4811100 4544600 430950 231540 199410 0 0 0 0 0 0 0 0 0 5140400 2687100 2453400 3784300 1892500 1891800 27041 1682 28484 143589;143590;143591 144475 144475 1 PVIACSVTIK VRSKQALGRACGVSRPVIACSVTIKEGSQL CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R P V I K E 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 10 0 1086.6107 P55769 P55769 98 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2 0.0014621 65.305 By matching By MS/MS By matching 1 1 1 0.95027 0.81574 35.543 3 Median NaN NaN NaN 0 0 Median 1.7844 1.4737 NaN 1 0 Median 0.84986 0.81574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95027 0.77922 NaN 1 0 Median 15928000 8007700 7919900 0 0 0 5407900 2529100 2878800 8167000 4407400 3759700 0 0 0 0 0 0 2352700 1071300 1281400 27042 2501 28485 143592;143593;143594 144476 144476 1 PVIDNPNYK NPRCESAPGCGVWQRPVIDNPNYKGKWKPP CGVWQRPVIDNPNYKGKWKPPMIDNPSYQG R P V Y K G 0 0 2 1 0 0 0 0 0 1 0 1 0 0 2 0 0 0 1 1 0 0 9 0 1058.5397 P27824 P27824 372 380 CANX Calnexin yes yes 2 8.9949E-07 159.04 By MS/MS By MS/MS 1 4 1.1215 0.99214 11.217 5 Median 1.0434 0.99214 NaN 1 0 Median 1.1471 0.98908 12.82 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36885000 18145000 18740000 4203200 2258100 1945100 32682000 15887000 16795000 0 0 0 0 0 0 0 0 0 0 0 0 27043 2158 28486 143595;143596;143597;143598;143599 144477;144478;144479;144480;144481 144478 5 PVILLPEDTPPFLELK CLANYSRGGDGPMCRPVILLPEDTPPFLEL VILLPEDTPPFLELKGSRHPCITKTFFGDD R P V L K G 0 0 0 1 0 0 2 0 0 1 4 1 0 1 4 0 1 0 0 1 0 0 16 0 1820.0335 P52701;A0A494C0M1;A0A087WYT6 P52701 1077 1092 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00013168 51.927 By MS/MS By MS/MS By matching 1 2 1 0.41332 0.44072 17.412 4 Median 0.37368 0.35246 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.41332 0.44072 2.1162 2 0 Median 0.59958 0.53921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3547800 2414800 1133100 1172900 793510 379400 0 0 0 2159900 1482100 677820 215040 139220 75823 0 0 0 0 0 0 27044 2453 28487 143600;143601;143602;143603 144482;144483;144484;144485;144486;144487 144482 6 PVIVEPLEQLDDEDGLPEK ERCSEGVFLLTTTPRPVIVEPLEQLDDEDG EPLEQLDDEDGLPEKLAQKNPMYQKERETP R P V E K L 0 0 0 3 0 1 4 1 0 1 3 1 0 0 3 0 0 0 0 2 0 0 19 0 2134.0681 P23246 P23246 444 462 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 3.2891E-31 141.32 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 8 4 2 0.69394 0.6438 16.755 17 Median 0.45505 0.48411 NaN 1 0 Median 0.73538 0.6452 0.3069 2 0 Median 0.58871 0.63083 17.031 8 4 Median 0.82297 0.71224 10.602 4 0 Median 0.67069 0.68943 22.825 2 1 Median NaN NaN NaN 0 0 Median 218680000 131800000 86881000 348880 212030 136850 7131900 4003100 3128800 184700000 113410000 71294000 20010000 10524000 9485600 6486200 3650300 2835800 0 0 0 27045 2107 28488 143604;143605;143606;143607;143608;143609;143610;143611;143612;143613;143614;143615;143616;143617;143618;143619;143620 144488;144489;144490;144491;144492;144493;144494;144495;144496;144497;144498;144499;144500;144501;144502;144503;144504;144505;144506;144507;144508 144496 21 PVIVEPMEQFDDEDGLPEK ERCGDGAFLLTTTPRPVIVEPMEQFDDEDG EPMEQFDDEDGLPEKLMQKTQQYHKEREQP R P V E K L 0 0 0 3 0 1 4 1 0 1 1 1 1 1 3 0 0 0 0 2 0 0 19 0 2186.0089 Q8WXF1;X6RDA4 Q8WXF1 229 247 PSPC1 Paraspeckle component 1 yes no 2;3 1.8423E-11 83.617 By MS/MS By matching 4 1 0.51253 0.51467 26.648 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4942 0.48909 30.691 4 2 Median 0.67778 0.58177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23815000 15944000 7870800 0 0 0 0 0 0 23385000 15705000 7679900 429740 238860 190870 0 0 0 0 0 0 27046 3520 28489;28490 143621;143622;143623;143624;143625 144509;144510;144511;144512;144513 144512 1753 5 PVLVLSQNTK ______________________________ MMGHRPVLVLSQNTKRESGRKVQSGNINAA R P V T K R 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 10 0 1097.6445 P49368;E9PRC8;E9PM09;Q5SZX9 P49368 6 15 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00036244 94.302 By MS/MS By matching 1 1 0.82384 0.75999 7.028 2 Median NaN NaN NaN 0 0 Median 0.85761 0.72314 NaN 1 0 Median 0.7914 0.79871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7816200 3887900 3928300 0 0 0 6852400 3500800 3351600 963750 387110 576640 0 0 0 0 0 0 0 0 0 27047 2379 28491 143626;143627 144514;144515 144514 2 PVPSYIQRPDYADHPLGMSESEQALK YTGKLRPHYPLMPTRPVPSYIQRPDYADHP ADHPLGMSESEQALKGTSQIKLLSSEDIEG R P V L K G 2 1 0 2 0 2 2 1 1 1 2 1 1 0 4 3 0 0 2 1 0 0 26 1 2927.4124 P53582 P53582 98 123 METAP1 Methionine aminopeptidase 1 yes yes 4 0.017828 14.653 By MS/MS 1 0.68871 0.78349 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68871 0.78349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8367300 4777700 3589600 0 0 0 0 0 0 8367300 4777700 3589600 0 0 0 0 0 0 0 0 0 27048 2468 28492 143628 144516 144516 1 PVQDLIK KKLTVNPGTKSKLPKPVQDLIKMIFDVESM GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K P V I K M 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 7 0 811.48035 P09874 P09874 668 674 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0021154 113.7 By matching By MS/MS By MS/MS 1 4 4 0.93302 0.83113 34.953 9 Median NaN NaN NaN 0 0 Median 0.85436 0.7403 NaN 1 0 Median 0.74848 0.81964 51.983 4 3 Median 0.99786 0.87282 11.213 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66655000 38415000 28240000 0 0 0 3305700 1690500 1615200 33676000 22330000 11347000 29673000 14395000 15278000 0 0 0 0 0 0 27049 1922 28493 143629;143630;143631;143632;143633;143634;143635;143636;143637 144517;144518;144519;144520;144521;144522;144523;144524 144521 8 PVSELIR RRRRSLSPTYIELMRPVSELIRSRPQPAEE PTYIELMRPVSELIRSRPQPAEEYEDDTER R P V I R S 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 7 0 812.4756 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42 A0A0A0MRA3 25980 25986 TTN Titin yes no 2 0.027151 52.231 By MS/MS By matching 6 2 0.92329 0.95296 15.662 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85404 0.9037 15.794 6 0 Median 1.3282 1.0582 8.5235 2 0 Median 68720000 31633000 37087000 0 0 0 0 0 0 0 0 0 0 0 0 41307000 20963000 20344000 27413000 10670000 16743000 27050 155 28494 143638;143639;143640;143641;143642;143643;143644;143645 144525;144526 144525 2 PVSQLVAQQVTQQFVPPTQSK MMCDVRKGTSTRKPRPVSQLVAQQVTQQFV AQQVTQQFVPPTQSKKEKKDKVEKEKSEKE R P V S K K 1 0 0 0 0 6 0 0 0 0 1 1 0 1 3 2 2 0 0 4 0 0 21 0 2309.2379 Q8IY57 Q8IY57 55 75 YAF2 YY1-associated factor 2 yes yes 3 0.026292 13.588 By MS/MS By matching 1 1 0.59108 0.5874 13.497 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5555 0.53393 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62893 0.64622 NaN 1 0 Median NaN NaN NaN 0 0 Median 3417900 2189100 1228800 0 0 0 0 0 0 2229800 1516300 713460 0 0 0 1188100 672760 515370 0 0 0 27051 3337 28495 143646;143647 144527 144527 1 PVSSAASVYAGAGGSGSR YRSLGSVQAPSYGARPVSSAASVYAGAGGS SAASVYAGAGGSGSRISVSRSTSFRGGMGS R P V S R I 4 1 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 18 0 1579.759 P05783;F8VZY9 P05783 28 45 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 4.3023E-146 294.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 10 23 9 17 15 1.0704 0.94288 22.644 68 Median 0.9257 0.89689 23.095 7 2 Median 1.1141 0.92588 27.239 9 1 Median 1.0877 1.1099 20.204 12 4 Median 1.0876 0.93644 15.194 9 3 Median 1.139 1.2035 11.478 16 4 Median 1.0306 0.83387 9.0193 15 1 Median 2381900000 1187600000 1194300000 180670000 95094000 85577000 146880000 70632000 76244000 589020000 325630000 263390000 738470000 355540000 382930000 369460000 166650000 202810000 357380000 174090000 183300000 27052 1869 28496 143648;143649;143650;143651;143652;143653;143654;143655;143656;143657;143658;143659;143660;143661;143662;143663;143664;143665;143666;143667;143668;143669;143670;143671;143672;143673;143674;143675;143676;143677;143678;143679;143680;143681;143682;143683;143684;143685;143686;143687;143688;143689;143690;143691;143692;143693;143694;143695;143696;143697;143698;143699;143700;143701;143702;143703;143704;143705;143706;143707;143708;143709;143710;143711;143712;143713;143714;143715;143716;143717;143718;143719;143720;143721;143722;143723;143724;143725;143726;143727;143728 144528;144529;144530;144531;144532;144533;144534;144535;144536;144537;144538;144539;144540;144541;144542;144543;144544;144545;144546;144547;144548;144549;144550;144551;144552;144553;144554;144555;144556;144557;144558;144559;144560;144561;144562;144563;144564;144565;144566;144567;144568;144569;144570;144571;144572;144573;144574;144575;144576;144577;144578;144579;144580;144581;144582;144583;144584;144585;144586;144587;144588;144589;144590;144591;144592;144593;144594;144595;144596;144597;144598;144599;144600;144601;144602;144603;144604;144605;144606;144607;144608;144609;144610;144611;144612;144613;144614;144615;144616;144617;144618;144619;144620;144621;144622;144623;144624;144625;144626;144627;144628;144629;144630;144631;144632;144633;144634;144635;144636;144637;144638;144639;144640;144641;144642;144643;144644;144645;144646;144647;144648;144649;144650;144651;144652;144653;144654;144655;144656;144657;144658;144659;144660;144661;144662;144663;144664;144665;144666;144667;144668;144669;144670;144671;144672;144673;144674;144675;144676;144677;144678;144679;144680;144681;144682;144683;144684;144685;144686;144687;144688;144689;144690;144691;144692;144693;144694;144695;144696;144697;144698;144699;144700;144701;144702;144703;144704;144705;144706;144707;144708;144709;144710;144711;144712;144713;144714;144715;144716;144717;144718;144719;144720;144721;144722;144723;144724;144725;144726;144727;144728;144729 144682 202 PVTALEYTFSR YRDQIPSPGLMVFPKPVTALEYTFSRSDPT VFPKPVTALEYTFSRSDPTSYAGYIEDLKK K P V S R S 1 1 0 0 0 0 1 0 0 0 1 0 0 1 1 1 2 0 1 1 0 0 11 0 1282.6558 P54709;C9JA36;C9JXZ1 P54709 87 97 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2 3.8764E-05 154.56 By MS/MS By MS/MS By MS/MS 1 3 1 0.96473 0.96228 49.688 5 Median 0.96473 0.96228 NaN 1 0 Median 0.77739 0.64647 68.591 3 0 Median 1.0163 1.101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34180000 20462000 13717000 13466000 9006500 4459500 17117000 9814900 7301900 3597200 1641000 1956100 0 0 0 0 0 0 0 0 0 27053 2485 28497 143729;143730;143731;143732;143733 144730;144731;144732 144730 3 PVTEKDLAEDAPWKK ______________________________ PVTEKDLAEDAPWKKIQQNTFTRWCNEHLK M P V K K I 2 0 0 2 0 0 2 0 0 0 1 3 0 0 2 0 1 1 0 1 0 0 15 2 1725.8938 O75369 O75369 2 16 FLNB Filamin-B yes yes 4 0.0031794 30.133 By MS/MS By matching By matching 1 1 1 0.79917 0.944 34.013 3 Median 0.79917 0.944 NaN 1 0 Median 0.95644 0.99631 NaN 1 0 Median 0.46527 0.53905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10180000 5454300 4726000 5741600 2997100 2744400 2608200 1370300 1237800 1830600 1086900 743710 0 0 0 0 0 0 0 0 0 27054 1664 28498 143734;143735;143736 144733 144733 1 PVTVEPMDQLDDEEGLPEK DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG EPMDQLDDEEGLPEKLVIKNQQFHKEREQP R P V E K L 0 0 0 3 0 1 4 1 0 0 2 1 1 0 3 0 1 0 0 2 0 0 19 0 2139.9882 Q15233;H7C367 Q15233 221 239 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 2.5166E-38 201.3 By matching By MS/MS By MS/MS By MS/MS 1 8 8 1 0.74344 0.69627 12.916 18 Median NaN NaN NaN 0 0 Median 0.84226 0.76651 NaN 1 0 Median 0.62166 0.62323 14.114 8 0 Median 0.82588 0.71189 7.5784 8 0 Median 0.56813 0.54406 NaN 1 0 Median NaN NaN NaN 0 0 Median 327360000 194670000 132690000 0 0 0 210800 117410 93392 292740000 176620000 116130000 32254000 16763000 15491000 2151600 1173800 977780 0 0 0 27055 2935 28499;28500 143737;143738;143739;143740;143741;143742;143743;143744;143745;143746;143747;143748;143749;143750;143751;143752;143753;143754 144734;144735;144736;144737;144738;144739;144740;144741;144742;144743;144744;144745;144746;144747;144748;144749;144750;144751;144752;144753;144754;144755;144756;144757;144758;144759;144760;144761;144762;144763;144764;144765;144766 144751 1622 33 PVWSDDDWLKK VNLAKPMRIKEGSSRPVWSDDDWLKKFSGK GSSRPVWSDDDWLKKFSGKTLEENKEEEGS R P V K K F 0 0 0 3 0 0 0 0 0 0 1 2 0 0 1 1 0 2 0 1 0 0 11 1 1387.6772 Q9UNP9;E9PKY5;E9PK21;E9PIB0 Q9UNP9 94 104 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 3 0.043738 15.539 By MS/MS 1 0.9322 0.97812 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9322 0.97812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2424500 1328000 1096500 0 0 0 0 0 0 2424500 1328000 1096500 0 0 0 0 0 0 0 0 0 27056 4347 28501 143755 144767 144767 1 PVYHAITK FNISHTQTRLLSMAKPVYHAITKHSPKKPV RLLSMAKPVYHAITKHSPKKPVIVFVPSRK K P V T K H 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 1 0 1 1 0 0 8 0 927.5178 O75643 O75643 1545 1552 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.075154 29.376 By MS/MS By matching By matching By matching 1 1 1 1 1.0884 0.99364 12.037 4 Median NaN NaN NaN 0 0 Median 1.1291 0.98096 NaN 1 0 Median 0.73809 0.81795 NaN 1 0 Median 1.1199 1.0065 NaN 1 0 Median 1.0578 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median 2270900 1132500 1138400 0 0 0 842910 421750 421150 656190 334250 321940 250100 116260 133830 521680 260260 261420 0 0 0 27057 1688 28502 143756;143757;143758;143759 144768 144768 1 PWSQHYHQGYY QGYNQWQQGQFWGQKPWSQHYHQGYY____ WGQKPWSQHYHQGYY_______________ K P W Y Y - 0 0 0 0 0 2 0 1 2 0 0 0 0 0 1 1 0 1 3 0 0 0 11 0 1464.6211 Q00839;A0A1X7SBS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4;A0A087WVI9 Q00839 815 825 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 0.00015139 88.596 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13081000 0 0 0 0 0 0 0 0 4481400 0 0 8599500 0 0 0 0 0 0 0 0 27058 2680 28503 143760;143761;143762 144769;144770;144771 144770 3 PYFPIPEEYTFIQNVPLEDR CHNCAVEFNFGQKEKPYFPIPEEYTFIQNV PEEYTFIQNVPLEDRVRGPKGPEEKKDCEV K P Y D R V 0 1 1 1 0 1 3 0 0 2 1 0 0 2 4 0 1 0 2 1 0 0 20 0 2466.2107 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 465 484 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 3 0.0070215 31.462 By MS/MS 1 0.49467 0.52583 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49467 0.52583 NaN 1 1 Median NaN NaN NaN 0 0 Median 834190 592370 241820 0 0 0 0 0 0 0 0 0 0 0 0 834190 592370 241820 0 0 0 27059 2680 28504 143763 144772 144772 1 PYQYPALTPEQK ______________________________ ______________________________ M P Y Q K K 1 0 0 0 0 2 1 0 0 0 1 1 0 0 3 0 1 0 2 0 0 0 12 0 1433.7191 J3KPS3;P04075;H3BQN4;H3BUH7;H3BR04;H3BMQ8 J3KPS3 2 13 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 3.2601E-06 122.96 By MS/MS By MS/MS By matching 1 2 1 0.88619 0.78316 81.971 4 Median 0.9584 0.87817 NaN 1 0 Median 0.81836 0.69537 0.61998 2 0 Median 3.5714 3.8154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99568000 45441000 54127000 78653000 36916000 41737000 6343700 3280000 3063700 14571000 5244700 9326000 0 0 0 0 0 0 0 0 0 27060 1310 28505 143764;143765;143766;143767 144773;144774;144775;144776;144777;144778;144779;144780;144781 144777 9 PYQYPALTPEQKK ______________________________ ______________________________ M P Y K K E 1 0 0 0 0 2 1 0 0 0 1 2 0 0 3 0 1 0 2 0 0 0 13 1 1561.814 J3KPS3;P04075;H3BQN4;H3BUH7;H3BR04;H3BMQ8 J3KPS3 2 14 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 1.2398E-05 126.34 By MS/MS 3 1.1339 1.0532 24.276 3 Median 1.1339 1.0532 24.276 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51594000 28815000 22779000 51594000 28815000 22779000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27061 1310 28506 143768;143769;143770 144782;144783;144784;144785;144786;144787;144788;144789;144790 144787 9 PYSHALVAGIDR KAVIVKNIDDGTSDRPYSHALVAGIDRYPR SDRPYSHALVAGIDRYPRKVTAAMGKKKIA R P Y D R Y 2 1 0 1 0 0 0 1 1 1 1 0 0 0 1 1 0 0 1 1 0 0 12 0 1297.6779 P61353;K7ELC7 P61353 37 48 RPL27 60S ribosomal protein L27 yes no 3 0.01065 26.541 By matching By MS/MS By matching 1 1 1 1.1015 0.998 7.9208 3 Median 1.071 1.0736 NaN 1 0 Median 1.1015 0.91644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2682 0.998 NaN 1 0 Median 3368300 1384500 1983800 2071100 777480 1293600 1030400 480510 549860 0 0 0 0 0 0 0 0 0 266820 126480 140340 27062 2557 28507 143771;143772;143773 144791 144791 1 QAAAHTDHLRDVLR VRDAMENEMRTQLRRQAAAHTDHLRDVLRV RQAAAHTDHLRDVLRVQEQELKSEFEQNLS R Q A L R V 3 2 0 2 0 1 0 0 2 0 2 0 0 0 0 0 1 0 0 1 0 0 14 1 1601.8386 Q16891;B9A067;C9J406;H7C463 Q16891 486 499 IMMT MICOS complex subunit MIC60 yes no 4 0.010212 25.718 By MS/MS 1 0.99248 1.0176 NaN 1 Median 0.99248 1.0176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2017500 985850 1031600 2017500 985850 1031600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27063 3001 28508 143774 144792;144793 144792 2 QAAASATQTIAAAQHAASTPK AIKKKLVQRLEHAAKQAAASATQTIAAAQH TQTIAAAQHAASTPKASAGPQPLLVQSCKA K Q A P K A 9 0 0 0 0 3 0 0 1 1 0 1 0 0 1 2 3 0 0 0 0 0 21 0 1994.0181 Q9Y490 Q9Y490 923 943 TLN1 Talin-1 yes yes 3 3.1989E-12 74.698 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 0.98458 0.91022 10.225 6 Median 0.7975 0.76264 NaN 1 0 Median 1.0556 0.94451 6.5086 3 0 Plateau 0.84653 0.932 NaN 1 1 Median 1.1219 1.0174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114020000 61991000 52030000 44777000 24963000 19814000 44048000 22042000 22005000 23468000 14058000 9410000 1727500 927480 799990 0 0 0 0 0 0 27064 4441 28509 143775;143776;143777;143778;143779;143780 144794;144795;144796;144797;144798;144799;144800;144801 144794 8 QAAGVISLPVGGNK TQRPLRNLVSYLKQKQAAGVISLPVGGNKD KQAAGVISLPVGGNKDKENTGVLHAFPPSK K Q A N K D 2 0 1 0 0 1 0 3 0 1 1 1 0 0 1 1 0 0 0 2 0 0 14 0 1309.7354 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 855 868 RBM15 Putative RNA-binding protein 15 yes no 2 8.2583E-06 91.855 By MS/MS By matching 1 1 0.87948 0.84219 15.968 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86382 0.94286 NaN 1 0 Median 0.89543 0.75227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11425000 5982700 5442100 0 0 0 0 0 0 10704000 5672900 5031600 720310 309820 410490 0 0 0 0 0 0 27065 60 28510 143781;143782 144802;144803 144803 2 QAAPPIELDAVWEDIRER RKMKRKESAFKSMLKQAAPPIELDAVWEDI PPIELDAVWEDIRERFVKEPAFEDITLESE K Q A E R F 3 2 0 2 0 1 3 0 0 2 1 0 0 0 2 0 0 1 0 1 0 0 18 1 2107.0698 O75400;A0A3F2YNY6 O75400 756 773 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 0.066124 9.1834 By MS/MS 2 0.52754 0.64935 19.042 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52754 0.64935 19.042 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3644200 2040400 1603800 0 0 0 0 0 0 3644200 2040400 1603800 0 0 0 0 0 0 0 0 0 27066 1670 28511 143783;143784 144804;144805 144805 2 QAASGLVGQENAR SHVKGLGLDESGLAKQAASGLVGQENAREA AKQAASGLVGQENAREACGVIVELIKSKKM K Q A A R E 3 1 1 0 0 2 1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1299.6531 Q9Y265 Q9Y265 34 46 RUVBL1 RuvB-like 1 yes yes 2 5.2583E-06 97.456 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1154 1.0692 8.0302 6 Median 1.1371 1.1344 NaN 1 0 Median 1.2969 1.0973 NaN 1 0 Median 1.0708 1.0991 7.5645 2 0 Median 1.1018 0.95894 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1261 0.96877 NaN 1 0 Median 14667000 6313500 8353300 3023000 1367700 1655200 5815200 2418600 3396700 4644100 2020200 2623900 504740 253230 251500 0 0 0 679670 253720 425950 27067 4375 28512 143785;143786;143787;143788;143789;143790 144806;144807;144808;144809;144810;144811;144812;144813;144814 144811 9 QAASSLQQASLK ELLARKDSETGENIRQAASSLQQASLKLFE NIRQAASSLQQASLKLFEMAYKKMASEREG R Q A L K L 3 0 0 0 0 3 0 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1230.6568 P38646 P38646 635 646 HSPA9 Stress-70 protein, mitochondrial yes yes 2 4.0661E-06 105.52 By MS/MS By MS/MS By MS/MS 2 3 1 1.3337 1.2812 35.059 6 Median 1.0905 1.0437 19.922 2 0 Median 1.5462 1.366 44.022 3 1 Median 1.378 1.3929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88399000 35818000 52581000 24301000 11014000 13287000 52069000 21555000 30514000 12029000 3248300 8780300 0 0 0 0 0 0 0 0 0 27068 2277 28513 143791;143792;143793;143794;143795;143796 144815;144816;144817;144818;144819;144820;144821;144822 144817 8 QAAVGQGDFHLLDHR EKERLQQQKRTEALRQAAVGQGDFHLLDHR QAAVGQGDFHLLDHRGRARCKADFRGQWVL R Q A H R G 2 1 0 2 0 2 0 2 2 0 2 0 0 1 0 0 0 0 0 1 0 0 15 0 1662.8227 O43819;A0A1W2PQK0 O43819 96 110 SCO2 Protein SCO2 homolog, mitochondrial yes no 3 0.0066215 37.092 By MS/MS 1 0.93038 0.88159 NaN 1 Median 0.93038 0.88159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9163700 4405900 4757800 9163700 4405900 4757800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27069 1595 28514 143797 144823 144823 1 QACTPMFR GPHNHAIAAVAVALKQACTPMFREYSLQVL AVAVALKQACTPMFREYSLQVLKNARAMAD K Q A F R E 1 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 8 0 1009.4474 P34897;H0YIZ0;G3V2Y4 P34897 341 348 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.049701 34.808 By MS/MS 2 1.0835 0.94025 0.091673 2 Median NaN NaN NaN 0 0 Median 1.0835 0.94025 0.091673 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828300 1353300 1475000 0 0 0 2828300 1353300 1475000 0 0 0 0 0 0 0 0 0 0 0 0 27070 2228 28515 143798;143799 144824 144824 1 QADFEAHNILR VTPTFLTTGVLSTLRQADFEAHNILRESGY STLRQADFEAHNILRESGYAGKISQMPVIL R Q A L R E 2 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 11 0 1312.6524 P49915 P49915 590 600 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 0.00027653 93.111 By MS/MS By MS/MS By MS/MS 3 2 1 1.0143 0.91388 29.672 6 Median 0.95887 0.90732 43.863 3 1 Median 1.0143 0.89511 3.9531 2 0 Median 1.049 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41662000 20125000 21537000 19038000 9736900 9300800 6443600 3197100 3246500 16181000 7190700 8990000 0 0 0 0 0 0 0 0 0 27071 2405 28516 143800;143801;143802;143803;143804;143805 144825;144826;144827;144828;144829;144830;144831;144832 144825 8 QADLYISEGLHPR DGTTSNVLIIGELLKQADLYISEGLHPRII LKQADLYISEGLHPRIITEGFEAAKEKALQ K Q A P R I 1 1 0 1 0 1 1 1 1 1 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1497.7576 P40227;Q92526 P40227 105 117 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 no no 2;3 4.3064E-11 134.84 By MS/MS By MS/MS By MS/MS 3 3 2 1.1743 1.0247 23.604 8 Median 0.98844 0.92847 28.58 3 1 Median 1.1114 0.93597 17.184 3 0 Median 1.3257 1.3336 10.157 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127580000 59871000 67713000 90390000 42586000 47803000 17194000 8117000 9077200 19999000 9167200 10832000 0 0 0 0 0 0 0 0 0 27072 2285;3532 28517 143806;143807;143808;143809;143810;143811;143812;143813 144833;144834;144835;144836;144837;144838;144839;144840;144841;144842;144843;144844;144845;144846 144836 14 QADNPHVALYQAR NPKATLRYFQHLLGKQADNPHVALYQARFP GKQADNPHVALYQARFPEHELTFDPQRQTV K Q A A R F 3 1 1 1 0 2 0 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 13 0 1481.7375 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06 A0A087X054 107 119 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 0.00060715 48.568 By MS/MS 3 0.91185 0.77307 14.728 2 Median NaN NaN NaN 0 0 Median 0.91185 0.77307 14.728 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9202200 4796500 4405800 0 0 0 9202200 4796500 4405800 0 0 0 0 0 0 0 0 0 0 0 0 27073 101 28518 143814;143815;143816 144847;144848;144849;144850 144848 4 QADVNLVNAK LSPAVIVGLLKEASKQADVNLVNAKLLVTT KEASKQADVNLVNAKLLVTTSHSPAAPGEQ K Q A A K L 2 0 2 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1070.572 A0A286YF22;O43175;A0A2C9F2M7 A0A286YF22 385 394 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0018068 80.229 By MS/MS 1 1.651 1.4 NaN 1 Median NaN NaN NaN 0 0 Median 1.651 1.4 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9665200 4024700 5640500 0 0 0 9665200 4024700 5640500 0 0 0 0 0 0 0 0 0 0 0 0 27074 351 28519 143817 144851 144851 1 QADYVPSDQDLLR IDCAQYFLDKIDVIKQADYVPSDQDLLRCR IKQADYVPSDQDLLRCRVLTSGIFETKFQV K Q A L R C 1 1 0 3 0 2 0 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 13 0 1518.7314 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6;A0A590UJQ2;A0A590UJS2;S4R3E3;A0A590UJ22;A0A590UKA4;A0A590UK28 Q5JWF2 830 842 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 7.4492E-07 115.57 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1.0325 1.0127 17.898 6 Median 0.85656 0.85347 NaN 1 0 Median 1.0171 0.90076 NaN 1 0 Median 1.0969 1.1463 0.97301 2 0 Median 0.9066 0.77526 NaN 1 0 Median 1.1754 1.165 NaN 1 0 Median NaN NaN NaN 0 0 Median 17881000 8839300 9042100 3352300 1864400 1487900 492460 223270 269190 10554000 4777100 5777000 429040 207430 221610 3053500 1767000 1286400 0 0 0 27075 2616 28520 143818;143819;143820;143821;143822;143823 144852;144853 144853 2 QAEEQIEHLQR ESKKIADEDALRRIRQAEEQIEHLQRKLGA RRIRQAEEQIEHLQRKLGATKQEEEALLSE R Q A Q R K 1 1 0 0 0 3 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1379.6793 O75150;H3BP71 O75150 732 742 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2;3 0.0054939 45.997 By MS/MS By MS/MS 1 2 0.93607 1.0012 17.738 3 Median NaN NaN NaN 0 0 Median 0.93607 0.80087 NaN 1 0 Median 0.97099 1.0669 8.9871 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9123100 4491700 4631400 0 0 0 2250700 1019400 1231300 6872400 3472300 3400100 0 0 0 0 0 0 0 0 0 27076 1648 28521 143824;143825;143826 144854;144855;144856 144856 3 QAEETYENIPGQSK LLLGNLLSPDNVVRKQAEETYENIPGQSKI KQAEETYENIPGQSKITFLLQAIRNTTAAE K Q A S K I 1 0 1 0 0 2 3 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 14 0 1592.7318 O00410;E7ETV3;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5;C9J875;C9JXE0 O00410 28 41 IPO5 Importin-5 yes no 2 5.7594E-05 84.507 By MS/MS 1 0.90923 0.78328 NaN 1 Median NaN NaN NaN 0 0 Median 0.90923 0.78328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3831700 1874400 1957300 0 0 0 3831700 1874400 1957300 0 0 0 0 0 0 0 0 0 0 0 0 27077 1460 28522 143827 144857;144858 144857 2 QAEGVLSSQEYVLSHTEMPGTLQAADAAIK LAQAHGFQGFLRDARQAEGVLSSQEYVLSH TEMPGTLQAADAAIKKLEDFMSTMDANGER R Q A I K K 5 0 0 1 0 3 3 2 1 1 3 1 1 0 1 3 2 0 1 2 0 0 30 0 3143.5445 O15020 O15020 1183 1212 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.078965 4.1654 By MS/MS 1 0.69359 0.77289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69359 0.77289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2407400 1473600 933730 0 0 0 0 0 0 2407400 1473600 933730 0 0 0 0 0 0 0 0 0 27078 1512 28523 143828 144859 144859 1 QAEILQESR EKMRAEDGENYDIKKQAEILQESRMMIPDC NYDIKKQAEILQESRMMIPDCQRRLEAAYL K Q A S R M 1 1 0 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 E5RIW3;E5RJD8;O75347 E5RIW3 29 37 TBCA Tubulin-specific chaperone A yes no 2 0.00014996 144.12 By MS/MS By MS/MS By MS/MS 1 1 1 1.2275 1.1163 8.0136 3 Plateau 1.0878 1.0562 NaN 1 0 Median 1.385 1.1799 NaN 1 0 Median 0.99707 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39203000 17211000 21992000 15987000 7549300 8437500 21037000 8579600 12458000 2179000 1081900 1097100 0 0 0 0 0 0 0 0 0 27079 852 28524 143829;143830;143831 144860;144861;144862;144863;144864 144864 5 QAELAQWQK PTREKLTPEQLHSMRQAELAQWQKVLPRRR QLHSMRQAELAQWQKVLPRRRTRNIVTGLG R Q A Q K V 2 0 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 9 0 1100.5615 Q9Y2R0;K7EPV0 Q9Y2R0 40 48 COA3 Cytochrome c oxidase assembly factor 3 homolog, mitochondrial yes no 2 0.0004774 98.997 By MS/MS By MS/MS 1 1 1.3854 1.1974 30.479 2 Median 1.6365 1.4853 NaN 1 0 Median 1.1728 0.96522 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30349000 12823000 17526000 16944000 6054000 10890000 13405000 6769200 6635500 0 0 0 0 0 0 0 0 0 0 0 0 27080 4388 28525 143832;143833 144865;144866;144867 144867 3 QAELEEGRPQHQEQLR EQQQQQVAREMALQRQAELEEGRPQHQEQL AELEEGRPQHQEQLRQQAHYDAMDNDIVQG R Q A L R Q 1 2 0 0 0 4 4 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 16 1 1946.9559 O00461;F8W785 O00461 463 478 GOLIM4 Golgi integral membrane protein 4 yes no 3 4.0391E-05 65.716 By MS/MS 1 1.2372 1.1927 NaN 1 Median NaN NaN NaN 0 0 Median 1.2372 1.1927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5131700 2134400 2997300 0 0 0 5131700 2134400 2997300 0 0 0 0 0 0 0 0 0 0 0 0 27081 1466 28526 143834 144868;144869 144869 2 QAEMLDDLMEK CKNGFLLDGFPRTVRQAEMLDDLMEKRKEK RTVRQAEMLDDLMEKRKEKLDSVIEFSIPD R Q A E K R 1 0 0 2 0 1 2 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 11 0 1321.5894 F8W1A4;P54819;F8VZG5;F8VY04 F8W1A4 107 117 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 2 0.0012806 59.908 By MS/MS By matching 1 1 1.4555 1.2948 28.875 2 Median 1.1308 1.0557 NaN 1 0 Median 1.8734 1.5881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14462000 6370700 8090900 12345000 5616100 6728600 2117000 754600 1362400 0 0 0 0 0 0 0 0 0 0 0 0 27082 1081 28527 143835;143836 144870;144871 144871 2 QAENGMYIR ISVEVDSDPRAAYFRQAENGMYIRMALLAT RAAYFRQAENGMYIRMALLATVLGRF____ R Q A I R M 1 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 9 0 1080.5022 F8VPD4;P27708;H7C2E4 F8VPD4 2143 2151 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.050756 44.447 By MS/MS 1 1.3852 1.1737 NaN 1 Median NaN NaN NaN 0 0 Median 1.3852 1.1737 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 927470 334120 593350 0 0 0 927470 334120 593350 0 0 0 0 0 0 0 0 0 0 0 0 27083 1057 28528 143837 144872 144872 1 QAESFEDLRR KGSPVNALQNKRAPKQAESFEDLRRDVFNM KRAPKQAESFEDLRRDVFNMFCYLGPHLSH K Q A R R D 1 2 0 1 0 1 2 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 1 1249.6051 Q8NI27;A0A0C4DG98 Q8NI27 420 429 THOC2 THO complex subunit 2 yes no 3 0.0013167 50.284 By MS/MS 2 1.1314 1.4023 0.56547 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1314 1.4023 0.56547 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11148000 5231700 5916100 0 0 0 0 0 0 11148000 5231700 5916100 0 0 0 0 0 0 0 0 0 27084 3448 28529 143838;143839 144873 144873 1 QAEVELASR ERLRRQVQDESQRKRQAEVELASRVKAEAE ESQRKRQAEVELASRVKAEAEAAREKQRAL R Q A S R V 2 1 0 0 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1001.5142 Q15149 Q15149 1649 1657 PLEC Plectin yes yes 2 0.0034093 65.305 By MS/MS By MS/MS 1 1 0.96672 0.88771 9.7367 2 Median 0.95791 0.95098 NaN 1 0 Median 0.97561 0.82865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4272800 2028900 2243900 697780 374310 323470 3575000 1654600 1920400 0 0 0 0 0 0 0 0 0 0 0 0 27085 2933 28530 143840;143841 144874;144875 144875 2 QAFAPFGPIK YVGSIYYELGEDTIRQAFAPFGPIKSIDMS EDTIRQAFAPFGPIKSIDMSWDSVTMKHKG R Q A I K S 2 0 0 0 0 1 0 1 0 1 0 1 0 2 2 0 0 0 0 0 0 0 10 0 1074.5862 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19;H0YCP8 A0A0J9YVP6 122 131 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.00072484 71.877 By matching By MS/MS By matching 1 1 1 0.75755 0.68638 4.2243 3 Median 0.75755 0.73262 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70843 0.68638 NaN 1 0 Median 0.77457 0.67689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22158000 11973000 10186000 1852100 927710 924370 0 0 0 19821000 10770000 9051300 484610 274730 209870 0 0 0 0 0 0 27086 284 28531 143842;143843;143844 144876;144877 144877 2 QAFHMEQLK REALEYQRQQLLADRQAFHMEQLKYAEMRA QLLADRQAFHMEQLKYAEMRARQQHFQQMH R Q A L K Y 1 0 0 0 0 2 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 9 0 1130.5543 Q8TAQ2;F8VXC8 Q8TAQ2 932 940 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.0071885 91.783 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27087 3455 28532 143845 144878 144878 1 QAFNATAVVR VSAQIRKNFAKSKWRQAFNATAVVRHMRKL KSKWRQAFNATAVVRHMRKLHLGSSLDSSN R Q A V R H 3 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 10 0 1075.5774 Q14012;H7C071;A0A087WUR6;Q8IU85 A0A087WUR6 214 223 CAMK1;CAMK1D Calcium/calmodulin-dependent protein kinase type 1;Calcium/calmodulin-dependent protein kinase type 1D no no 2 0.0070254 62.463 By MS/MS 1 0.8279 0.82073 NaN 1 Median 0.8279 0.82073 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5329100 2528600 2800500 5329100 2528600 2800500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27088 34;2852 28533 143846 144879 144879 1 QAFPNTNR TLLWLYKQVLEPSFRQAFPNTNRWFLTCIN VLEPSFRQAFPNTNRWFLTCINQPQFRAVL R Q A N R W 1 1 2 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 8 0 946.46208 P26641 P26641 182 189 EEF1G Elongation factor 1-gamma yes yes 2 0.00045728 153.73 By MS/MS By MS/MS By MS/MS 1 1 1 1.0135 0.85929 14.275 3 Median NaN NaN NaN 0 0 Median 1.0135 0.85929 NaN 1 0 Median 1.0942 1.0896 NaN 1 0 Median 0.97441 0.84356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17560000 8544200 9016100 0 0 0 5011100 2744000 2267100 6915600 3219100 3696500 5633700 2581200 3052500 0 0 0 0 0 0 27089 2149 28534 143847;143848;143849 144880;144881;144882;144883;144884;144885;144886;144887;144888 144887 9 QAFYFALR PRLFDLVKVKDEKIRQAFYFALRDTLVADN VKDEKIRQAFYFALRDTLVADNLDQATRVA R Q A L R D 2 1 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 8 0 1014.5287 Q9NTJ3;E9PD53 Q9NTJ3 706 713 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.039331 37.021 By MS/MS By MS/MS By matching 1 1 1 1.23 1.2977 11.905 3 Median 1.3263 1.2977 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2085 1.3187 NaN 1 0 Median 1.23 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396500 2379700 3016800 3323100 1414400 1908700 0 0 0 1932700 904470 1028300 140680 60818 79859 0 0 0 0 0 0 27090 4108 28535 143850;143851;143852 144889;144890;144891 144889 3 QAGAEALSQAVAR SLLIDDVIYHEAAVRQAGAEALSQAVARYQ VRQAGAEALSQAVARYQRQAAEVMGRLMEI R Q A A R Y 5 1 0 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1270.663 Q92616 Q92616 1177 1189 GCN1L1 Translational activator GCN1 yes yes 2 4.9399E-05 88.596 By MS/MS 2 1.3784 1.1455 20.018 2 Median NaN NaN NaN 0 0 Median 1.3784 1.1455 20.018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18530000 7894400 10635000 0 0 0 18530000 7894400 10635000 0 0 0 0 0 0 0 0 0 0 0 0 27091 3544 28536 143853;143854 144892;144893 144893 2 QAGEVTFADAHRPK LSSRVSWQDLKDFMRQAGEVTFADAHRPKL RQAGEVTFADAHRPKLNEGVVEFASYGDLK R Q A P K L 3 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 14 1 1525.7637 Q13243 Q13243 130 143 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 3 0.0019 37.013 By MS/MS By matching 2 1 2.7739 2.9819 247.36 3 Plateau NaN NaN NaN 0 0 Median 0.17353 0.15757 254.42 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.7739 2.9819 NaN 1 0 Median NaN NaN NaN 0 0 Median 31470000 25791000 5679500 0 0 0 26719000 24824000 1895700 0 0 0 0 0 0 4750800 966970 3783900 0 0 0 27092 2800 28537 143855;143856;143857 144894;144895;144896 144895 3 QAGEVTYADAHK LSSRCSWQDLKDFMRQAGEVTYADAHKERT FMRQAGEVTYADAHKERTNEGVIEFRSYSD R Q A H K E 3 0 0 1 0 1 1 1 1 0 0 1 0 0 0 0 1 0 1 1 0 0 12 0 1288.6048 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 132 143 SRSF6 Serine/arginine-rich splicing factor 6 no no 3 0.057414 13.413 By MS/MS 2 1.2141 1.0681 6.1903 2 Median NaN NaN NaN 0 0 Median 1.2141 1.0681 6.1903 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1556100 741930 814130 0 0 0 1556100 741930 814130 0 0 0 0 0 0 0 0 0 0 0 0 27093 485 28538 143858;143859 144897 144897 1 QAGGFLGPPPPSGK IQKILGLAPSRAATKQAGGFLGPPPPSGKF KQAGGFLGPPPPSGKFS_____________ K Q A G K F 1 0 0 0 0 1 0 4 0 0 1 1 0 1 4 1 0 0 0 0 0 0 14 0 1308.6826 J3QQY2;Q9UM00 J3QQY2 89 102 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes no 2 0.0014153 48.741 By MS/MS 2 0.80179 0.7739 7.5082 2 Median NaN NaN NaN 0 0 Median 0.80179 0.7739 7.5082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5511700 2865300 2646300 0 0 0 5511700 2865300 2646300 0 0 0 0 0 0 0 0 0 0 0 0 27094 1345 28539 143860;143861 144898;144899 144898 2 QAGLSYIR ______________________________ ______________________________ R Q A I R Y 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 906.49232 Q5VTU8;P56381 Q5VTU8 7 14 ATP5EP2;ATP5E ATP synthase subunit epsilon-like protein, mitochondrial;ATP synthase subunit epsilon, mitochondrial yes no 2 0.0017928 142.64 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0693 1.0689 16.138 5 Median 0.92508 0.88569 16.526 2 0 Median 1.4167 1.1459 NaN 1 0 Median 1.0693 1.0689 NaN 1 0 Median 1.6348 1.1807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71524000 32607000 38916000 44902000 21772000 23130000 23747000 9619400 14127000 2002500 921050 1081500 872480 294800 577680 0 0 0 0 0 0 27095 2511 28540 143862;143863;143864;143865;143866 144900;144901;144902;144903 144900 4 QAGPASVPLR DGPRTADGIVSHLKKQAGPASVPLRTEEEF SHLKKQAGPASVPLRTEEEFKKFISDKDAS K Q A L R T 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 994.55598 P30101 P30101 131 140 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0013065 66.692 By MS/MS By matching 1 1 1.5409 1.4119 53.086 2 Median 2.0616 2.055 NaN 1 0 Median 1.1518 0.96999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10258000 4970900 5286900 2098700 860900 1237800 8159100 4110000 4049100 0 0 0 0 0 0 0 0 0 0 0 0 27096 2189 28541 143867;143868 144904 144904 1 QAGPASVPLRTEEEFKK DGPRTADGIVSHLKKQAGPASVPLRTEEEF GPASVPLRTEEEFKKFISDKDASIVGFFDD K Q A K K F 2 1 0 0 0 1 3 1 0 0 1 2 0 1 2 1 1 0 0 1 0 0 17 2 1885.9898 P30101 P30101 131 147 PDIA3 Protein disulfide-isomerase A3 yes yes 4 0.019432 19.287 By MS/MS By MS/MS 2 1 0.77543 0.83944 12.084 3 Median 0.74644 0.82097 3.1461 2 0 Median NaN NaN NaN 0 0 Median 0.82011 1.0085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26511000 14706000 11805000 21676000 12028000 9647600 0 0 0 4835500 2677700 2157800 0 0 0 0 0 0 0 0 0 27097 2189 28542 143869;143870;143871 144905;144906;144907;144908 144907 4 QAGVFEPTIVK WIGLDLSNGKPRDNKQAGVFEPTIVKVKSL RDNKQAGVFEPTIVKVKSLKFATEAAITIL K Q A V K V 1 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 2 0 0 11 0 1187.655 P17987;E7EQR6;F5H282 P17987 500 510 TCP1 T-complex protein 1 subunit alpha yes no 2 0.039858 46.335 By MS/MS 1 3.1138 2.8609 NaN 1 Median 3.1138 2.8609 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 145540000 25651000 119890000 145540000 25651000 119890000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27098 2051 28543 143872 144909 144909 1 QAHLCVLASNCDEPMYVK LARGIREAAKALDKRQAHLCVLASNCDEPM LCVLASNCDEPMYVKLVEALCAEHQINLIK R Q A V K L 2 0 1 1 2 1 1 0 1 0 2 1 1 0 1 1 0 0 1 2 0 0 18 0 2133.9646 P25398 P25398 46 63 RPS12 40S ribosomal protein S12 yes yes 3 1.4079E-06 75.574 By MS/MS By MS/MS 1 1 0.98495 0.88014 2.0237 2 Median NaN NaN NaN 0 0 Median 1.0766 0.89283 NaN 1 0 Median 0.90113 0.86764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9659800 4627300 5032600 0 0 0 3738500 1755500 1983000 5921300 2871800 3049500 0 0 0 0 0 0 0 0 0 27099 2132 28544 143873;143874 144910;144911;144912;144913 144910 4 QAHLTNQYMQR TKPLYVALAQRKEERQAHLTNQYMQRMASV KEERQAHLTNQYMQRMASVRAVPNPVINPY R Q A Q R M 1 1 1 0 0 3 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1388.6619 P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YB86 P11940 375 385 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2;3 8.7061E-07 157.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 1 2 1.1097 1.0051 41.215 12 Median 1.1599 1.1204 60.832 5 0 Median 0.98615 0.85451 22.41 4 0 Median 1.1866 1.2314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8288 0.69195 9.4292 2 0 Median 60359000 27886000 32473000 22019000 10323000 11696000 30250000 13695000 16555000 5986400 2767100 3219300 0 0 0 0 0 0 2103800 1101100 1002700 27100 1973 28545 143875;143876;143877;143878;143879;143880;143881;143882;143883;143884;143885;143886;143887 144914;144915;144916;144917;144918;144919;144920;144921;144922;144923;144924;144925;144926;144927;144928;144929 144927 16 QAHTMDPQLR DLSRFDASFFGVHPKQAHTMDPQLRLLLEV GVHPKQAHTMDPQLRLLLEVTYEAIVDGGI K Q A L R L 1 1 0 1 0 2 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 10 0 1195.5768 P49327;A0A0U1RQF0;A0A0U1RRG3 P49327 71 80 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.051946 24.838 By MS/MS By MS/MS 1 1 1.8306 1.6905 11.611 2 Median 1.5614 1.5572 NaN 1 1 Median 2.1463 1.8351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1578700 120850 1457900 625630 53614 572020 953080 67241 885840 0 0 0 0 0 0 0 0 0 0 0 0 27101 2377 28546 143888;143889 144930;144931 144931 2 QAHVELAER ITKELTRAASDYAGKQAHVELAERMRKRDP SDYAGKQAHVELAERMRKRDPGSAPSLGDR K Q A E R M 2 1 0 0 0 1 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1051.5411 M0R2B7;P28340;A0A087WYJ2;M0QZR8;M0QXE6;M0QXQ2 M0R2B7 924 932 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.049787 31.074 By matching By MS/MS 1 1 0.81537 0.73853 14.379 2 Median 0.87239 0.81757 NaN 1 0 Median 0.76208 0.66713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1462400 809550 652820 358000 177060 180940 1104400 632490 471880 0 0 0 0 0 0 0 0 0 0 0 0 27102 1436 28547 143890;143891 144932 144932 1 QAIEGVGNLR KGYIYVEAYKQTHVKQAIEGVGNLRLGYWN QTHVKQAIEGVGNLRLGYWNQQMVPIKEMT K Q A L R L 1 1 1 0 0 1 1 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1055.5724 O00267 O00267 237 246 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.0011611 86.136 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27103 1452 28548 143892 144933 144933 1 QAIGIALETR VNKMFQRCLDDHKYKQAIGIALETRRLDVF DHKYKQAIGIALETRRLDVFEKTILESNDV K Q A T R R 2 1 0 0 0 1 1 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1070.6084 A0A087WW66;Q99460;H7BZR6;C9J9M4 A0A087WW66 149 158 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0013144 66.621 By matching By MS/MS 1 2 1.0792 0.90112 37.745 3 Median 1.337 1.3374 NaN 1 0 Median 0.88388 0.75275 25.443 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16671000 8259200 8411700 2125300 1031000 1094400 14546000 7228200 7317300 0 0 0 0 0 0 0 0 0 0 0 0 27104 54 28549 143893;143894;143895 144934 144934 1 QAILAAQR VLRKKGPTAAQAKSKQAILAAQRRGEDVET AAQAKSKQAILAAQRRGEDVETSKKWAAGQ K Q A Q R R 3 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 869.5083 O60869 O60869 26 33 EDF1 Endothelial differentiation-related factor 1 yes yes 2 0.0083716 63.148 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0297 0.92849 10.56 4 Median 1.0255 1.0122 NaN 1 0 Median 1.0437 0.86859 NaN 1 0 Median 1.0338 0.99251 NaN 1 0 Median 0.98389 0.813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11840000 5884100 5955500 889540 448250 441290 1002200 494730 507520 6708200 3258800 3449300 1150700 552080 598650 2088900 1130300 958690 0 0 0 27105 1635 28550 143896;143897;143898;143899;143900 144935;144936;144937;144938;144939 144936 5 QAILETPDR NADVRPPFTYASLIRQAILETPDRQLTLNE YASLIRQAILETPDRQLTLNEIYNWFTRMF R Q A D R Q 1 1 0 1 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 9 0 1041.5455 B7ZBM3;Q8IVH2 B7ZBM3 466 474 FOXP4 Forkhead box protein P4 yes no 2 0.0098224 48.794 By MS/MS 1 0.69489 0.7342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69489 0.7342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3507900 1564800 1943100 0 0 0 0 0 0 3507900 1564800 1943100 0 0 0 0 0 0 0 0 0 27106 640 28551 143901 144940 144940 1 QAILGEHPSSFR KPYLGRRDRGKGRQRQAILGEHPSSFRHDG RQRQAILGEHPSSFRHDGYGSHGPLLPLPS R Q A F R H 1 1 0 0 0 1 1 1 1 1 1 0 0 1 1 2 0 0 0 0 0 0 12 0 1340.6837 B7WPG3;C9IYN3;D6W592;Q8WVV9 B7WPG3 242 253 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 3 0.00032033 56.087 By MS/MS 1 0.86595 0.89294 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86595 0.89294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4938700 2560000 2378700 0 0 0 0 0 0 4938700 2560000 2378700 0 0 0 0 0 0 0 0 0 27107 629 28552 143902 144941;144942 144941 2 QAIPIGLQNR VIDKCGYKEPTPIQRQAIPIGLQNRDIIGV TPIQRQAIPIGLQNRDIIGVAETGSGKTAA R Q A N R D 1 1 1 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 10 0 1108.6353 Q9BUQ8;H0YI52 Q9BUQ8 420 429 DDX23 Probable ATP-dependent RNA helicase DDX23 yes no 2 0.00064965 95.741 By MS/MS By MS/MS By MS/MS 1 1 1 0.84006 0.82261 7.3577 3 Median NaN NaN NaN 0 0 Median 0.84006 0.7618 NaN 1 0 Median 0.77535 0.82261 NaN 1 0 Median 1.0352 0.88253 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15001000 8169800 6831200 0 0 0 868200 431440 436760 12963000 7269300 5693900 1169600 469010 700550 0 0 0 0 0 0 27108 3842 28553 143903;143904;143905 144943;144944;144945 144943 3 QAITQVVVSR DENGNRLGESANAAKQAITQVVVSRILMAA ANAAKQAITQVVVSRILMAAPGMAIPPFIM K Q A S R I 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 1 0 0 3 0 0 10 0 1099.635 Q9H9B4 Q9H9B4 224 233 SFXN1 Sideroflexin-1 yes yes 2 1.7503E-05 148.52 By MS/MS By MS/MS By matching 1 1 1 1.0995 1.0613 10.727 3 Median 1.087 1.015 NaN 1 0 Median 1.4968 1.2448 NaN 1 0 Median 1.0995 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75936000 34635000 41301000 59026000 28307000 30719000 15206000 5569400 9636300 1704600 758560 946000 0 0 0 0 0 0 0 0 0 27109 3998 28554 143906;143907;143908 144946;144947;144948;144949 144947 4 QAIVDKVPSVSSSALVSSLHLLK ITDSTMLQAIERYMKQAIVDKVPSVSSSAL SVSSSALVSSLHLLKCSFDVVKRWVNEAQE K Q A L K C 2 0 0 1 0 1 0 0 1 1 4 2 0 0 1 6 0 0 0 4 0 0 23 1 2377.3581 Q9Y678 Q9Y678 146 168 COPG1 Coatomer subunit gamma-1 yes yes 3;4 4.3663E-12 59.814 By MS/MS 2 1.037 1.0039 19.565 2 Median NaN NaN NaN 0 0 Median 1.037 1.0039 19.565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13171000 6327300 6843800 0 0 0 13171000 6327300 6843800 0 0 0 0 0 0 0 0 0 0 0 0 27110 4481 28555 143909;143910 144950;144951;144952 144951 3 QALASEDVTALLGR QCLTERAISWQGRARQALASEDVTALLGRL RQALASEDVTALLGRLAELRQRLQAEPRPE R Q A G R L 3 1 0 1 0 1 1 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 14 0 1442.7729 P41229 P41229 1294 1307 KDM5C Lysine-specific demethylase 5C yes yes 2 0.0007454 68.355 By MS/MS 1 1.2452 1.0479 NaN 1 Median NaN NaN NaN 0 0 Median 1.2452 1.0479 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1969400 854230 1115100 0 0 0 1969400 854230 1115100 0 0 0 0 0 0 0 0 0 0 0 0 27111 2299 28556 143911 144953 144953 1 QALAYLEQSYK LKNRSSVEVRMEFVRQALAYLEQSYKNYTL EFVRQALAYLEQSYKNYTLVTVFGNLHQAQ R Q A Y K N 2 0 0 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 2 0 0 0 11 0 1312.6663 Q8N1F7;H3BVG0;H3BP95;H3BPA9 Q8N1F7 257 267 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00011205 123.86 By matching By MS/MS 2 1 1.0527 1.1401 26.394 3 Plateau 0.89085 0.86257 29.573 2 0 Median NaN NaN NaN 0 0 Median 1.0527 1.1401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29071000 13760000 15311000 7241200 3552400 3688800 0 0 0 21830000 10207000 11623000 0 0 0 0 0 0 0 0 0 27112 3356 28557 143912;143913;143914 144954;144955 144955 2 QALEDLER YAAQGRYEVAVPLCKQALEDLERTSGRGHP VAVPLCKQALEDLERTSGRGHPDVATMLNI K Q A E R T 1 1 0 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 972.48762 Q9NSK0;C9J8T5;C9JZE5;Q6P597;K7ENJ3;K7EL76 Q9NSK0 236 243 KLC4;KLC3 Kinesin light chain 4;Kinesin light chain 3 no no 2 0.0035841 87.323 By MS/MS 1 1.239 1.0756 NaN 1 Median NaN NaN NaN 0 0 Median 1.239 1.0756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3269000 1391600 1877400 0 0 0 3269000 1391600 1877400 0 0 0 0 0 0 0 0 0 0 0 0 27113 4105;3161 28558 143915 144956 144956 1 QALESILASER IKELILDIKYPATKKQALESILASERLPFS ATKKQALESILASERLPFSCLRNITQTLMD K Q A E R L 2 1 0 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1215.6459 Q9H2M9 Q9H2M9 593 603 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.004196 70.1 By MS/MS 1 0.8642 0.84997 NaN 1 Median 0.8642 0.84997 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3067300 1940300 1127000 3067300 1940300 1127000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27114 3945 28559 143916 144957 144957 1 QALETVNDYNPLMK RFHATVSFDTDTGLKQALETVNDYNPLMKD KQALETVNDYNPLMKDFPLNDLLSATELDK K Q A M K D 1 0 2 1 0 1 1 0 0 0 2 1 1 0 1 0 1 0 1 1 0 0 14 0 1634.7974 Q14204 Q14204 324 337 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 6.6868E-06 93.096 By MS/MS 2 0.84601 0.90668 5.7808 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84601 0.90668 5.7808 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24760000 12284000 12476000 0 0 0 0 0 0 24760000 12284000 12476000 0 0 0 0 0 0 0 0 0 27115 2865 28560;28561 143917;143918 144958;144959;144960;144961 144961 1558 4 QALLQYK VKERGTVYFKEGKYKQALLQYKKIVSWLEY YFKEGKYKQALLQYKKIVSWLEYESSFSNE K Q A Y K K 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 862.49125 Q02790 Q02790 288 294 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.015489 71.359 By MS/MS By matching 1 1 1.0032 0.9745 4.0818 2 Median NaN NaN NaN 0 0 Median 1.1842 1.003 NaN 1 0 Median 0.84992 0.94677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19137000 9225600 9911600 0 0 0 14408000 6620700 7787200 4729300 2605000 2124400 0 0 0 0 0 0 0 0 0 27116 2701 28562 143919;143920 144962;144963 144962 2 QALMEEQVNGR DLQLLLESLQEEKCRQALMEEQVNGRLQGQ EKCRQALMEEQVNGRLQGQLNEIYNLKHNL R Q A G R L 1 1 1 0 0 2 2 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1273.6085 O15482 O15482 248 258 TEX28 Testis-specific protein TEX28 yes yes 2 0.00091005 61.962 By MS/MS 1 1.2248 1.0362 NaN 1 Median NaN NaN NaN 0 0 Median 1.2248 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26830000 12394000 14436000 0 0 0 26830000 12394000 14436000 0 0 0 0 0 0 0 0 0 0 0 0 27117 1549 28563 143921 144964;144965 144964 2 QALMPTLEALYR PSQPRKKIFKPEELRQALMPTLEALYRQDP ELRQALMPTLEALYRQDPESLPFRQPVDPQ R Q A Y R Q 2 1 0 0 0 1 1 0 0 0 3 0 1 0 1 0 1 0 1 0 0 0 12 0 1404.7435 Q92793;I3L466;Q09472 Q92793 1092 1103 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 2 0.00029876 82.749 By matching By MS/MS By matching 1 1 1 1.2284 1.0349 8.4849 3 Median NaN NaN NaN 0 0 Median 1.3437 1.1574 NaN 1 0 Median 0.88441 0.97999 NaN 1 0 Median 1.2284 1.0349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3704000 1821300 1882600 0 0 0 86625 39052 47573 3475900 1716000 1759900 141420 66278 75138 0 0 0 0 0 0 27118 3557;2748 28564 143922;143923;143924 144966;144967 144966 2 QALPQVR NPYCAGIQGIVDAYRQALPQVRLYGPTNFA QGIVDAYRQALPQVRLYGPTNFAPIINHVA R Q A V R L 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 7 0 810.47119 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX45;H0Y524 Q99829 378 384 CPNE1 Copine-1 yes no 2 0.035468 60.358 By MS/MS 1 1.1962 1.0384 NaN 1 Median NaN NaN NaN 0 0 Median 1.1962 1.0384 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3263700 1589500 1674300 0 0 0 3263700 1589500 1674300 0 0 0 0 0 0 0 0 0 0 0 0 27119 559 28565 143925 144968 144968 1 QALQDLLSEYMGNAGR DDRRERIVAECNAVRQALQDLLSEYMGNAG ALQDLLSEYMGNAGRKERSDALNSAIDKMT R Q A G R K 2 1 1 1 0 2 1 2 0 0 3 0 1 0 0 1 0 0 1 0 0 0 16 0 1764.8465 P35221;G3XAM7 P35221 342 357 CTNNA1 Catenin alpha-1 yes no 2 0.0063621 31.639 By matching By MS/MS 1 1 1.0062 0.9714 3.4182 2 Median NaN NaN NaN 0 0 Median 1.1424 0.99517 NaN 1 0 Median 0.88628 0.9482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3731600 1862700 1868800 0 0 0 1916300 913720 1002600 1815200 949000 866230 0 0 0 0 0 0 0 0 0 27120 2232 28566 143926;143927 144969;144970 144970 2 QALQDTLALYK EERYKEVAELTRLRKQALQDTLALYKMFSE RLRKQALQDTLALYKMFSEADACELWIDEK K Q A Y K M 2 0 0 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 11 0 1262.6871 Q01082;A0A087WUZ3 Q01082 843 853 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00014624 112.84 By matching By MS/MS By MS/MS 1 2 2 0.94957 1.0114 39.498 5 Median 0.42539 0.45492 NaN 1 0 Median 1.3208 1.1636 8.5743 2 0 Median 0.91515 0.99083 2.9033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39584000 20408000 19175000 3538900 2568600 970330 9071800 3933200 5138600 26973000 13907000 13067000 0 0 0 0 0 0 0 0 0 27121 2681 28567 143928;143929;143930;143931;143932 144971;144972;144973 144971 2 QALSEVTAALR SSSLDDVDHKILTAKQALSEVTAALRERLH LTAKQALSEVTAALRERLHRWQQIEILCGF K Q A L R E 3 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 11 0 1157.6404 Q13586;E9PNJ4;G0XQ39;H0YDB2 Q13586 414 424 STIM1 Stromal interaction molecule 1 yes no 2 0.0011704 60.518 By MS/MS By matching 1 1 0.99456 0.92183 8.1407 2 Median 0.8939 0.87027 NaN 1 0 Median 1.1066 0.97645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4472900 1942500 2530400 3133400 1455500 1677900 1339500 487050 852480 0 0 0 0 0 0 0 0 0 0 0 0 27122 2827 28568 143933;143934 144974 144974 1 QALSGFGYR YDRDNSGMIDKNELKQALSGFGYRLSDQFH DKNELKQALSGFGYRLSDQFHDILIRKFDR K Q A Y R L 1 1 0 0 0 1 0 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 9 0 997.49813 O75340;A0A024QZ42 O75340 117 125 PDCD6 Programmed cell death protein 6 yes no 2 0.0019606 75.738 By MS/MS By matching 1 1 1.1986 0.98787 4.3876 2 Median NaN NaN NaN 0 0 Median 1.2294 1.019 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1686 0.95769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12254000 5492300 6761300 0 0 0 11891000 5308100 6583200 0 0 0 362240 184160 178080 0 0 0 0 0 0 27123 1659 28569 143935;143936 144975 144975 1 QALSTATATVSVGK GGEPQGPPFIKYSTRQALSTATATVSVGKF RQALSTATATVSVGKFRGRPVSLWELLFSE R Q A G K F 3 0 0 0 0 1 0 1 0 0 1 1 0 0 0 2 3 0 0 2 0 0 14 0 1332.7249 P58107;A0A075B730 P58107 489 502 EPPK1 Epiplakin yes no 2 4.9846E-08 130.56 By MS/MS By MS/MS 2 2 1.5018 1.393 14.122 4 Median 1.304 1.2829 0.78798 2 1 Median 1.8066 1.6077 9.4082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59827000 24992000 34834000 29976000 12796000 17179000 29851000 12196000 17655000 0 0 0 0 0 0 0 0 0 0 0 0 27124 2520 28570 143937;143938;143939;143940 144976;144977;144978;144979;144980;144981;144982 144976 7 QALVAIFTHLR PLNDLLSATELDKIRQALVAIFTHLRKIRN DKIRQALVAIFTHLRKIRNTKYPIQRALRL R Q A L R K 2 1 0 0 0 1 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 11 0 1267.7401 Q14204 Q14204 355 365 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 0.019614 35.224 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0941 1.0117 16.998 5 Median 0.81926 0.83016 NaN 1 0 Median 1.1405 0.96484 6.7076 2 0 Median 0.96196 1.0821 NaN 1 0 Median 1.5 1.3005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8578800 4115700 4463100 2312900 1198000 1114900 4760400 2236800 2523600 1379200 635350 743840 126300 45610 80689 0 0 0 0 0 0 27125 2865 28571 143941;143942;143943;143944;143945 144983;144984 144984 2 QALVEFENIDSAK KFGTICYVMMMPFKRQALVEFENIDSAKEC KRQALVEFENIDSAKECVTFAADEPVYIAG R Q A A K E 2 0 1 1 0 1 2 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1462.7304 B7WPG3;C9IYN3;D6W592;Q8WVV9;H7BXH8;C9JJZ7 B7WPG3 113 125 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 2 8.4275E-07 115.18 By MS/MS 1 1.8055 1.7527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8055 1.7527 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13805000 4669800 9134800 0 0 0 0 0 0 13805000 4669800 9134800 0 0 0 0 0 0 0 0 0 27126 629 28572 143946 144985 144985 1 QAMAILTPAVPAR SLLKAHAMEARAIVRQAMAILTPAVPARME VRQAMAILTPAVPARMEDGHQMLTHWTRKI R Q A A R M 4 1 0 0 0 1 0 0 0 1 1 0 1 0 2 0 1 0 0 1 0 0 13 0 1337.7489 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1903 1915 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00018752 81.865 By MS/MS 2 0.56766 0.61349 19.396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56766 0.61349 19.396 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10583000 6470100 4113100 0 0 0 0 0 0 10583000 6470100 4113100 0 0 0 0 0 0 0 0 0 27127 991 28573;28574 143947;143948 144986;144987 144987 344 2 QAMGVYITNFHVR HNQSPRNTYQSAMGKQAMGVYITNFHVRMD GKQAMGVYITNFHVRMDTLAHVLYYPQKPL K Q A V R M 1 1 1 0 0 1 0 1 1 1 0 0 1 1 0 0 1 0 1 2 0 0 13 0 1534.7715 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 724 736 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 0.058252 12.627 By MS/MS 1 0.79987 0.85419 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79987 0.85419 NaN 1 0 Median NaN NaN NaN 0 0 Median 1212600 730490 482100 0 0 0 0 0 0 0 0 0 0 0 0 1212600 730490 482100 0 0 0 27128 671 28575 143949 144988 144988 1 QAMLENASDIKLEK AENDFSVSQAEMSSRQAMLENASDIKLEKF RQAMLENASDIKLEKFSISAHGKELFVNAD R Q A E K F 2 0 1 1 0 1 2 0 0 1 2 2 1 0 0 1 0 0 0 0 0 0 14 1 1588.8131 Q8NE71;H0YGW7;Q5STZ8 Q8NE71 295 308 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 0.0044073 31.614 By matching By MS/MS 1 2 0.94251 1.0689 24.581 3 Median 1.2282 1.2924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80926 0.92102 21.058 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16182000 8357200 7825200 5078600 2094100 2984500 0 0 0 11104000 6263100 4840700 0 0 0 0 0 0 0 0 0 27129 3427 28576 143950;143951;143952 144989 144989 1 QAMTSIWNALVTDK PRLYRYQFDPNLGIRQAMTSIWNALVTDKS RQAMTSIWNALVTDKSMVDKYLKEILQDLV R Q A D K S 2 0 1 1 0 1 0 0 0 1 1 1 1 0 0 1 2 1 0 1 0 0 14 0 1576.7919 Q5VYK3;J3KN16 Q5VYK3 1140 1153 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.009029 34.887 By MS/MS By MS/MS 1 1 1.1776 1.0876 17.623 2 Median 0.99796 0.96016 NaN 1 0 Median 1.3895 1.2319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9840500 4743100 5097300 4150900 2224900 1926000 5689600 2518200 3171300 0 0 0 0 0 0 0 0 0 0 0 0 27130 3116 28577 143953;143954 144990;144991;144992 144992 3 QANKEYLLGSTAEEK PSLTGLTTIAAHLVKQANKEYLLGSTAEEK QANKEYLLGSTAEEKAIVQQWLEYRVTQVD K Q A E K A 2 0 1 0 0 1 3 1 0 0 2 2 0 0 0 1 1 0 1 0 0 0 15 1 1679.8366 O43324;D6RBD7;C9J1V9;H0YAL7;D6RCQ0 O43324 54 68 EEF1E1;EEF1E1-BLOC1S5 Eukaryotic translation elongation factor 1 epsilon-1 yes no 2;3 0.00010505 52.599 By MS/MS By MS/MS 2 1 1.1432 1.1416 11.523 3 Median 1.0814 1.0818 7.6076 2 0 Median 1.4595 1.2906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19165000 8861500 10304000 14846000 6999600 7846900 4318800 1861900 2456900 0 0 0 0 0 0 0 0 0 0 0 0 27131 1566 28578 143955;143956;143957 144993;144994;144995;144996;144997 144994 5 QANTGLFNLR SAVPRELLEKLIESRQANTGLFNLRQIVLA LIESRQANTGLFNLRQIVLAKVDQALHTQT R Q A L R Q 1 1 2 0 0 1 0 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1132.5989 P52888;K7EP46;K7EIK4;K7EMU4;K7EL32;K7EL02 P52888 544 553 THOP1 Thimet oligopeptidase yes no 2 0.00039409 78.516 By MS/MS 1 0.9239 0.87444 NaN 1 Median 0.9239 0.87444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7661900 3679300 3982600 7661900 3679300 3982600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27132 2460 28579 143958 144998 144998 1 QAPAPTVIRDPPSITPAVK TQDPSSPGTTPPQARQAPAPTVIRDPPSIT PTVIRDPPSITPAVKSPLPGPSEEKTLQPS R Q A V K S 3 1 0 1 0 1 0 0 0 2 0 1 0 0 5 1 2 0 0 2 0 0 19 1 1957.0997 Q13112 Q13112 439 457 CHAF1B Chromatin assembly factor 1 subunit B yes yes 3 0.04117 12.663 By MS/MS By matching 1 1 0.38988 0.38483 11.084 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3917 0.4162 NaN 1 0 Median 0.38807 0.35582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12564000 9584300 2979300 0 0 0 0 0 0 11964000 9155200 2808800 599650 429100 170550 0 0 0 0 0 0 27133 2786 28580 143959;143960 144999 144999 1 QAPLSQSDITILTPK REMEAQQAALDPALKQAPLSQSDITILTPK QAPLSQSDITILTPKLLSTSPMPTVSSYPP K Q A P K L 1 0 0 1 0 2 0 0 0 2 2 1 0 0 2 2 2 0 0 0 0 0 15 0 1610.8879 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 685 699 no no 2 0.065362 32.946 By MS/MS 1 0.66995 0.74672 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66995 0.74672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3500300 2120600 1379700 0 0 0 0 0 0 3500300 2120600 1379700 0 0 0 0 0 0 0 0 0 27134 388 28581 143961 145000 145000 1 QAPQTIHLPSGEILDVFDAAER GTFANIRLLNRFLNKQAPQTIHLPSGEILD LPSGEILDVFDAAERYQQAGLPLIVLAGKE K Q A E R Y 3 1 0 2 0 2 2 1 1 2 2 0 0 1 2 1 1 0 0 1 0 0 22 0 2406.2179 P21399 P21399 737 758 ACO1 Cytoplasmic aconitate hydratase yes yes 3 2.2595E-07 47.808 By MS/MS By matching 1 1 0.60409 0.61903 22.725 2 Median 0.73264 0.72694 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49809 0.52714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2450000 1405000 1045000 1837100 1073600 763550 0 0 0 612910 331440 281470 0 0 0 0 0 0 0 0 0 27135 2090 28582 143962;143963 145001 145001 1 QAQEYEALLNIK HLESELAQTRAEGQRQAQEYEALLNIKVKL GQRQAQEYEALLNIKVKLEAEIATYRRLLE R Q A I K V 2 0 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1418.7405 CON__P05784;P05783;F8VZY9 P05783 359 370 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 4.8419E-06 136.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 4 3 1.2361 1.153 17.342 16 Median 1.3559 1.2482 28.362 2 0 Median 1.4925 1.266 21.063 2 0 Median 1.1921 1.1244 9.0405 3 0 Median 1.3573 1.2183 20.051 2 0 Median 1.2922 1.2992 6.6092 4 0 Median 1.1921 0.97317 7.6092 3 0 Plateau 715840000 305680000 410160000 84602000 36285000 48317000 61191000 24598000 36593000 348280000 148680000 199600000 58037000 26821000 31216000 133940000 55228000 78714000 29788000 14070000 15718000 + 27136 1869;749 28583 143964;143965;143966;143967;143968;143969;143970;143971;143972;143973;143974;143975;143976;143977;143978;143979 145002;145003;145004;145005;145006;145007;145008;145009;145010;145011;145012;145013;145014;145015;145016;145017;145018;145019;145020;145021;145022 145008 21 QAQIEVVPSASALIIK WKGLRITVKLTIQNRQAQIEVVPSASALII AQIEVVPSASALIIKALKEPPRDRKKQKNI R Q A I K A 3 0 0 0 0 2 1 0 0 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1665.9665 P30050 P30050 68 83 RPL12 60S ribosomal protein L12 yes yes 2 6.9447E-09 123.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 2 1 1.0417 0.97102 21.758 10 Median 0.93525 0.87611 41.063 3 0 Median 1.053 0.90181 NaN 1 0 Median 0.95668 0.93127 5.1991 2 0 Median 1.1789 0.97593 NaN 1 0 Median 1.0193 1.0773 1.1058 2 0 Median 1.3243 1.1202 NaN 1 0 Median 166380000 81096000 85289000 100040000 48742000 51302000 9395700 4572500 4823200 11041000 5458400 5582800 1938700 907830 1030800 43759000 21327000 22431000 206380 87643 118740 27137 2185 28584 143980;143981;143982;143983;143984;143985;143986;143987;143988;143989 145023;145024;145025;145026;145027;145028;145029;145030;145031;145032;145033;145034 145024 12 QAQILASEAEK EGTRESAINVAEGKKQAQILASEAEKAEQI EGKKQAQILASEAEKAEQINQAAGEASAVL K Q A E K A 3 0 0 0 0 2 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1186.6194 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 223 233 STOML2 Stomatin-like protein 2, mitochondrial yes no 2 0.0005343 67.726 By MS/MS 1 1.3448 1.1529 NaN 1 Median NaN NaN NaN 0 0 Median 1.3448 1.1529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4258700 1711400 2547400 0 0 0 4258700 1711400 2547400 0 0 0 0 0 0 0 0 0 0 0 0 27138 4304 28585 143990 145035 145035 1 QAQILASEAEKAEQINQAAGEASAVLAK EGTRESAINVAEGKKQAQILASEAEKAEQI QINQAAGEASAVLAKAKAKAEAIRILAAAL K Q A A K A 9 0 1 0 0 4 4 1 0 2 2 2 0 0 0 2 0 0 0 1 0 0 28 1 2838.4723 Q9UJZ1;A0A087WYB4;F2Z2I8 Q9UJZ1 223 250 STOML2 Stomatin-like protein 2, mitochondrial yes no 3 0.064027 8.2867 By MS/MS 1 0.85993 0.80446 NaN 1 Median 0.85993 0.80446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2966700 1562400 1404300 2966700 1562400 1404300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27139 4304 28586 143991 145036 145036 1 QAQLAQTLQQQEQASQGLR QDQELAGLKQQAKEKQAQLAQTLQQQEQAS AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K Q A L R H 3 1 0 0 0 8 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 19 0 2125.0876 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 532 550 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 5.3365E-154 298.82 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 3 1.0006 1.0388 27.201 11 Median 1.1899 1.1642 NaN 1 0 Median 0.92517 0.782 29.479 2 1 Median 0.95431 1.0403 0.38924 3 2 Median 1.2159 1.0692 4.7153 2 0 Median 1.0006 1.0326 43.193 3 1 Median NaN NaN NaN 0 0 Median 240450000 119170000 121290000 3322500 1222200 2100300 7309700 3196900 4112900 197120000 98528000 98595000 2224700 924870 1299800 30472000 15294000 15178000 0 0 0 27140 2905;77 28587 143992;143993;143994;143995;143996;143997;143998;143999;144000;144001;144002 145037;145038;145039;145040;145041;145042;145043;145044;145045 145037 9 QAQQERDELADEIANSSGK IQLQEELAAAERAKRQAQQERDELADEIAN ERDELADEIANSSGKGALALEEKRRLEARI R Q A G K G 3 1 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 19 1 2087.972 P35579 P35579 1698 1716 MYH9 Myosin-9 yes yes 2;3 2.0432E-133 286.74 By MS/MS By MS/MS By MS/MS 2 2 2 1.0069 1.0465 9.5057 6 Median 1.1588 1.1542 2.4756 2 0 Median 1.0069 0.94221 2.1985 2 0 Median 0.87334 1.0465 5.3753 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239180000 110800000 128370000 139060000 61548000 77510000 59386000 27254000 32132000 40733000 22003000 18730000 0 0 0 0 0 0 0 0 0 27141 2244 28588 144003;144004;144005;144006;144007;144008 145046;145047;145048;145049;145050;145051;145052;145053;145054;145055;145056;145057;145058;145059 145051 14 QAQVATGGGPGAPPGSQPDYSAAWAEYYR PQQDYTKAWEEYYKKQAQVATGGGPGAPPG GSQPDYSAAWAEYYRQQAAYYGQTPGPGGP K Q A Y R Q 6 1 0 1 0 3 1 5 0 0 0 0 0 0 4 2 1 1 3 1 0 0 29 0 2951.3474 Q92945;M0R3J3;M0R0C6;M0R251;M0R263 Q92945 655 683 KHSRP Far upstream element-binding protein 2 yes no 3 1.7333E-19 77.522 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.50774 0.53689 19.877 5 Median 0.50159 0.48353 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48109 0.50128 9.7079 2 2 Median 0.64347 0.5523 NaN 1 0 Median 0.72716 0.77199 NaN 1 0 Median NaN NaN NaN 0 0 Median 43764000 32430000 11334000 4051600 2394000 1657600 0 0 0 36571000 28139000 8431600 878590 529020 349570 2263100 1368100 895020 0 0 0 27142 3568 28589 144009;144010;144011;144012;144013 145060;145061;145062;145063;145064;145065 145062 6 QASIQHIQNAIDTEK DKLNEQKLAQLEEAKQASIQHIQNAIDTEK QASIQHIQNAIDTEKSQQALVQKRHYLFDV K Q A E K S 2 0 1 1 0 3 1 0 1 3 0 1 0 0 0 1 1 0 0 0 0 0 15 0 1694.8588 Q5QNZ2;P24539 Q5QNZ2 79 93 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2;3 2.4999E-26 193.73 By MS/MS By MS/MS By matching 2 2 1 1.0474 0.96545 17.307 5 Median 0.98145 0.90576 9.0242 2 0 Median 1.479 1.2379 3.0274 2 0 Median 0.97607 0.93148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161410000 78357000 83048000 136010000 67258000 68751000 22253000 9547400 12705000 3143300 1552000 1591400 0 0 0 0 0 0 0 0 0 27143 2124 28590 144014;144015;144016;144017;144018 145066;145067;145068;145069;145070;145071;145072;145073 145068 8 QASPNIVIALAGNK DTFARAKNWVKELQRQASPNIVIALAGNKA RQASPNIVIALAGNKADLASKRAVEFQEAQ R Q A N K A 3 0 2 0 0 1 0 1 0 2 1 1 0 0 1 1 0 0 0 1 0 0 14 0 1394.7882 P51148;K7ERI8;K7ERQ8;K7ENY4 P51148 122 135 RAB5C Ras-related protein Rab-5C yes no 2 6.6868E-06 93.096 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.1814 1.0228 6.9225 6 Median 0.99515 0.91532 NaN 1 0 Median 1.2011 1.0274 0.60035 2 0 Median 1.0867 1.0225 NaN 1 0 Median 1.1853 0.97715 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3441 1.1296 NaN 1 0 Median 193580000 93368000 100210000 169560000 82554000 87005000 16534000 7371700 9162600 6726800 3091400 3635300 491640 234130 257500 0 0 0 264720 116080 148640 27144 2427 28591 144019;144020;144021;144022;144023;144024 145074;145075;145076;145077;145078;145079;145080;145081 145075 8 QASPNIVIALSGNK ESFARAKNWVKELQRQASPNIVIALSGNKA RQASPNIVIALSGNKADLANKRAVDFQEAQ R Q A N K A 2 0 2 0 0 1 0 1 0 2 1 1 0 0 1 2 0 0 0 1 0 0 14 0 1410.7831 P20339 P20339 121 134 RAB5A Ras-related protein Rab-5A yes yes 2 2.203E-05 86.114 By MS/MS By matching By matching 1 1 1 1.2249 1.2584 30.29 3 Median 0.82271 0.76479 NaN 1 0 Median 1.4781 1.3225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2249 1.2584 NaN 1 0 Median NaN NaN NaN 0 0 Median 19677000 10587000 9089800 18127000 9868400 8259100 400970 153870 247100 0 0 0 0 0 0 1148500 564920 583610 0 0 0 27145 2078 28592 144025;144026;144027 145082;145083 145082 2 QASPQNLGTPGLLHPQTSPLLHSLVGQHILSVQQFTK GTPDGTCYPPPPVPRQASPQNLGTPGLLHP SLVGQHILSVQQFTKDQMSHLFNVAHTLRM R Q A T K D 1 0 1 0 0 6 0 3 3 1 7 1 0 1 4 4 3 0 0 2 0 0 37 0 3971.1381 F8VPD4;P27708;H7BZB3 F8VPD4 1835 1871 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 5 0.077485 0 By MS/MS 1 0.51961 0.45114 NaN 1 Median NaN NaN NaN 0 0 Median 0.51961 0.45114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 795100 523600 271500 0 0 0 795100 523600 271500 0 0 0 0 0 0 0 0 0 0 0 0 27146 1057 28593 144028 145084 145084 1 QASPSIVIALAGNK ETFARAKTWVKELQRQASPSIVIALAGNKA RQASPSIVIALAGNKADLANKRMVEYEEAQ R Q A N K A 3 0 1 0 0 1 0 1 0 2 1 1 0 0 1 2 0 0 0 1 0 0 14 0 1367.7773 P61020 P61020 121 134 RAB5B Ras-related protein Rab-5B yes yes 2 3.6636E-06 95.483 By MS/MS By matching By matching By matching 1 1 1 1 0.93724 0.83557 38.913 4 Median 0.76814 0.7108 NaN 1 0 Median 1.1436 0.96927 NaN 1 0 Median 0.7477 0.72031 NaN 1 0 Median 1.7502 1.6325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38634000 18956000 19678000 29467000 15875000 13591000 2145900 965750 1180200 1818100 952380 865720 5202600 1162100 4040500 0 0 0 0 0 0 27147 2538 28594 144029;144030;144031;144032 145085;145086 145086 2 QASQGMVGQLAAR SHIRGLGLDDALEPRQASQGMVGQLAARRA PRQASQGMVGQLAARRAAGVVLEMIREGKI R Q A A R R 3 1 0 0 0 3 0 2 0 0 1 0 1 0 0 1 0 0 0 1 0 0 13 0 1315.6667 Q9Y230;X6R2L4 Q9Y230 41 53 RUVBL2 RuvB-like 2 yes no 2 5.1938E-07 150.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.86483 0.84435 37.485 5 Median 1.1227 1.0578 NaN 1 0 Median 1.2238 1.0292 NaN 1 0 Median 0.86483 0.84435 NaN 1 0 Median 0.60563 0.52069 25.242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79828000 38389000 41440000 26488000 11662000 14826000 12694000 5555600 7138600 28353000 14633000 13721000 12293000 6538600 5754500 0 0 0 0 0 0 27148 4368 28595 144033;144034;144035;144036;144037 145087;145088;145089;145090;145091;145092;145093;145094;145095;145096;145097 145091 11 QASTLIDRPAPHFER GSKFRYSGRTQAQTRQASTLIDRPAPHFER QASTLIDRPAPHFERTSSKRVSRSLDGAPI R Q A E R T 2 2 0 1 0 1 1 0 1 1 1 0 0 1 2 1 1 0 0 0 0 0 15 1 1736.8958 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3;H0Y5B0 O43491 527 541 EPB41L2 Band 4.1-like protein 2 yes no 3;4 1.4236E-07 87.148 By MS/MS By MS/MS By MS/MS 1 1 3 0.69557 0.84596 53.05 5 Median 0.6718 0.74639 NaN 1 0 Median 1.3887 1.3389 NaN 1 1 Median 0.69557 0.84596 61.018 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45396000 23298000 22098000 3299600 1705500 1594200 9427600 3710200 5717400 32668000 17882000 14786000 0 0 0 0 0 0 0 0 0 27149 1573 28596 144038;144039;144040;144041;144042 145098;145099;145100;145101 145099 4 QASVADYEETVKK TTYCPANNEPIARVRQASVADYEETVKKAR VRQASVADYEETVKKAREAWKIWADIPAPK R Q A K K A 2 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 1 0 1 2 0 0 13 1 1466.7253 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A0J9YWF7;H0YHM6;F8WDY6 P49419 82 94 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 3 0.0054197 29.491 By MS/MS By MS/MS 1 1 1.0101 0.95705 33.773 2 Median 0.78812 0.75374 NaN 1 1 Median 1.2945 1.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14285000 6817400 7467600 9482600 4719600 4763000 4802400 2097700 2704600 0 0 0 0 0 0 0 0 0 0 0 0 27150 318 28597 144043;144044 145102;145103;145104 145103 3 QATDDATLLIVNR CEDELRERIEKLEKRQATDDATLLIVNRYW KRQATDDATLLIVNRYWAQLDETVEALLRC R Q A N R Y 2 1 1 2 0 1 0 0 0 1 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1428.7573 O75150;H3BP71;H3BQ99;H3BUL6;I3L332 O75150 84 96 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 2.6176E-05 93.258 By MS/MS 3 1.1505 1.3373 30.157 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1505 1.3373 30.157 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54912000 24330000 30582000 0 0 0 0 0 0 54912000 24330000 30582000 0 0 0 0 0 0 0 0 0 27151 1648 28598 144045;144046;144047 145105;145106 145106 2 QATINIGTIGHVAHGK DVTKLTPLSHEVISRQATINIGTIGHVAHG ATINIGTIGHVAHGKSTVVKAISGVHTVRF R Q A G K S 2 0 1 0 0 1 0 3 2 3 0 1 0 0 0 0 2 0 0 1 0 0 16 0 1615.8794 P41091;Q2VIR3;H7BZU1 P41091 39 54 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3;4 9.1147E-06 70.942 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 5 1.2779 1.1195 10.317 14 Median 1.151 1.0783 9.7636 3 1 Median 1.2686 1.0562 1.6076 3 0 Median 1.3478 1.3272 9.5441 3 0 Median 1.3079 1.1744 9.6462 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83984000 36394000 47591000 17443000 7985700 9457200 11755000 5036200 6719100 30413000 12372000 18041000 24373000 11000000 13373000 0 0 0 0 0 0 27152 2295 28599 144048;144049;144050;144051;144052;144053;144054;144055;144056;144057;144058;144059;144060;144061 145107;145108;145109;145110;145111;145112;145113;145114;145115;145116;145117;145118 145117 12 QATMLGSHDELR PLQQMTFETSFQFLKQATMLGSHDELRSPS FLKQATMLGSHDELRSPSACLVVGKVVRGG K Q A L R S 1 1 0 1 0 1 1 1 1 0 2 0 1 0 0 1 1 0 0 0 0 0 12 0 1356.6456 O95602;B9ZVN9 O95602 1683 1694 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 0.0016267 39.561 By MS/MS 1 1.3648 1.514 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3648 1.514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3217900 1500200 1717700 0 0 0 0 0 0 3217900 1500200 1717700 0 0 0 0 0 0 0 0 0 27153 1781 28600 144062 145119 145119 1 QATSTASTFVKPIFSR ______________________________ ATSTASTFVKPIFSRDMNEAKRRVRELYRA R Q A S R D 2 1 0 0 0 1 0 0 0 1 0 1 0 2 1 3 3 0 0 1 0 0 16 1 1739.9206 P56556;A0A2Y9D025 P56556 8 23 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes no 3 0.0076409 25.319 By MS/MS By MS/MS By matching 1 1 1 1.0279 1.008 20.375 3 Median 1.0279 1.008 NaN 1 0 Median 1.4503 1.2805 NaN 1 0 Median 0.81489 0.85379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14759000 6943600 7815100 7037000 3647300 3389700 6853600 2822400 4031200 868120 473900 394220 0 0 0 0 0 0 0 0 0 27154 408 28601 144063;144064;144065 145120;145121;145122 145121 3 QATTIIADNIIFLSDQTK KIDYGEYMDKNNVRRQATTIIADNIIFLSD TIIADNIIFLSDQTKEKE____________ R Q A T K E 2 0 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 18 0 1991.0575 Q04837 Q04837 128 145 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2;3 0.022923 21.251 By MS/MS By matching 2 2 1.1872 1.2709 30.192 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.182 1.1763 1.2282 2 0 Median NaN NaN NaN 0 0 Median 1.571 1.7395 34.676 2 0 Median NaN NaN NaN 0 0 Median 7191800 3212800 3979000 0 0 0 0 0 0 4210100 1960800 2249300 0 0 0 2981700 1252000 1729700 0 0 0 27155 2713 28602 144066;144067;144068;144069 145123;145124 145124 2 QATVGDINTERPGMLDFTGK KPSDEEMLFIYGHYKQATVGDINTERPGML DINTERPGMLDFTGKAKWDAWNELKGTSKE K Q A G K A 1 1 1 2 0 1 1 3 0 1 1 1 1 1 1 0 3 0 0 1 0 0 20 1 2149.0474 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 90 109 DBI Acyl-CoA-binding protein yes no 3 0.017752 17.824 By matching By MS/MS 1 1 1.1778 1.1298 1.4053 2 Median NaN NaN NaN 0 0 Median 1.2924 1.1411 NaN 1 0 Median 1.0733 1.1186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6753800 3218700 3535100 0 0 0 3251100 1492400 1758700 3502700 1726300 1776400 0 0 0 0 0 0 0 0 0 27156 193 28603 144070;144071 145125 145125 1 QATYGYYLGNPAEFHDSSDHHTFKK YDRDKDDKISWEEYKQATYGYYLGNPAEFH PAEFHDSSDHHTFKKMLPRDERRFKAADLN K Q A K K M 2 0 1 2 0 1 1 2 3 0 1 2 0 2 1 2 2 0 3 0 0 0 25 1 2912.3154 Q15293 Q15293 142 166 RCN1 Reticulocalbin-1 yes yes 4;5 0.013419 22.32 By MS/MS 2 0.83168 0.773 4.6567 2 Median 0.83168 0.773 4.6567 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23269000 13045000 10223000 23269000 13045000 10223000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27157 2940 28604 144072;144073 145126;145127 145127 2 QAVDVSPLR REDSTRIGRAGTVRRQAVDVSPLRRVNQAI AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R Q A L R R 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 983.53999 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 137 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00012065 145.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 0.9463 0.84365 19.406 7 Median 0.88654 0.84365 NaN 1 0 Median 0.91209 0.76401 6.5423 2 0 Median 0.98113 0.94246 NaN 1 0 Median 1.5807 1.309 NaN 1 1 Median 0.93283 0.9372 NaN 1 0 Median 0.96085 0.77983 NaN 1 0 Median 113020000 57526000 55492000 71701000 37772000 33929000 9362900 4831500 4531400 17328000 8286500 9041800 2262500 767130 1495300 10335000 4752200 5583300 2027600 1116800 910810 27158 1425 28605 144074;144075;144076;144077;144078;144079;144080;144081 145128;145129;145130;145131;145132;145133;145134;145135;145136;145137;145138;145139;145140;145141 145128 14 QAVEMKNDKSEEEQSSSSVK SLLENLEKIEKEQSKQAVEMKNDKSEEEQS KNDKSEEEQSSSSVKKDETNVKMESEGGAD K Q A V K K 1 0 1 1 0 2 4 0 0 0 0 3 1 0 0 5 0 0 0 2 0 0 20 2 2239.0274 B2R5W2;B4DY08;G3V4W0;P07910;G3V2D6;G3V5V7 B2R5W2 211 230 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 9.4441E-09 73.11 By MS/MS 2 0.88494 0.96609 16.607 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88494 0.96609 16.607 2 0 Median NaN NaN NaN 0 0 Median 13385000 6696900 6687700 0 0 0 0 0 0 0 0 0 0 0 0 13385000 6696900 6687700 0 0 0 27159 582 28606 144082;144083 145142 145142 1 QAVEQQIQSHR EKEHLNKVQTANEVKQAVEQQIQSHRETHQ NEVKQAVEQQIQSHRETHQKQISSLRDEVE K Q A H R E 1 1 0 0 0 4 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1322.6691 P33176 P33176 699 709 KIF5B Kinesin-1 heavy chain yes yes 2;3 2.1957E-36 179.8 By MS/MS By MS/MS 1 2 1.1655 1.1124 8.1776 3 Median 1.1209 1.127 NaN 1 0 Median 1.2402 1.04 9.5232 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20237000 8410400 11826000 1194800 470770 724000 19042000 7939700 11102000 0 0 0 0 0 0 0 0 0 0 0 0 27160 2221 28607 144084;144085;144086 145143;145144;145145 145145 3 QAVINGPNVHPGASMVINEDGSR TYPQPVTPWNVQELRQAVINGPNVHPGASM VHPGASMVINEDGSRTALSAVDMTQREAVA R Q A S R T 2 1 3 1 0 1 1 3 1 2 0 0 1 0 2 2 0 0 0 3 0 0 23 0 2361.1495 O95602;B9ZVN9 O95602 482 504 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 2.9077E-24 108.37 By MS/MS 1 0.59493 0.64845 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59493 0.64845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21352000 13141000 8211100 0 0 0 0 0 0 21352000 13141000 8211100 0 0 0 0 0 0 0 0 0 27161 1781 28608 144087 145146;145147 145146 2 QAVMEMMSQK MEKIQPALQEKHAMKQAVMEMMSQKIQQLT KHAMKQAVMEMMSQKIQQLTALGAAQATAK K Q A Q K I 1 0 0 0 0 2 1 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 10 0 1181.5243 Q99471;H3BPF6;H3BMQ1 Q99471 129 138 PFDN5 Prefoldin subunit 5 yes no 2 0.019982 37.191 By matching By MS/MS 1 1 1.2363 1.114 4.3375 2 Median 1.1433 1.0803 NaN 1 0 Median 1.3368 1.1487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12236000 5426400 6809600 8846500 4042300 4804200 3389500 1384000 2005500 0 0 0 0 0 0 0 0 0 0 0 0 27162 3747 28609 144088;144089 145148 145148 1 QAVQILDELAEK SQLSALVDAQLDYHRQAVQILDELAEKLKR YHRQAVQILDELAEKLKRRMREASSRPKRE R Q A E K L 2 0 0 1 0 2 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1355.7296 Q99961 Q99961 228 239 SH3GL1 Endophilin-A2 yes yes 2 0.019076 33.225 By matching By matching By MS/MS By matching 2 2 2 1 1.0745 1.0284 15.585 7 Median 1.1294 1.0903 8.2634 2 0 Median 1.0559 0.90925 2.5009 2 0 Median 1.2037 1.2528 5.5769 2 0 Median 0.99401 0.88655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17360000 8023900 9335700 4268600 2123500 2145200 4752000 2181900 2570100 7255200 3123500 4131700 1083800 595040 488790 0 0 0 0 0 0 27163 3774 28610 144090;144091;144092;144093;144094;144095;144096 145149 145149 1 QAVTNPNNTFYATK FTADGERLVGMPAKRQAVTNPNNTFYATKR RQAVTNPNNTFYATKRLIGRRYDDPEVQKD R Q A T K R 2 0 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 14 0 1567.7631 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 108 121 HSPA9 Stress-70 protein, mitochondrial yes no 2 2.8117E-08 114.86 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.95844 0.92822 8.8024 6 Median 0.97911 0.9035 6.1714 3 0 Plateau 1.2534 1.046 NaN 1 0 Median 0.92776 0.93421 NaN 1 0 Median 1.1112 0.94851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77905000 36235000 41670000 39129000 17836000 21293000 22510000 10015000 12495000 14512000 7677500 6834400 1753400 706330 1047100 0 0 0 0 0 0 27164 2277 28611 144097;144098;144099;144100;144101;144102 145150;145151;145152;145153;145154;145155;145156;145157;145158;145159 145158 10 QAVTNPNNTFYATKR FTADGERLVGMPAKRQAVTNPNNTFYATKR QAVTNPNNTFYATKRLIGRRYDDPEVQKDI R Q A K R L 2 1 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 15 1 1723.8642 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 108 122 HSPA9 Stress-70 protein, mitochondrial yes no 3 0.0048256 40.237 By MS/MS 1 2.7614 2.7685 NaN 1 Median 2.7614 2.7685 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14579000 3622900 10956000 14579000 3622900 10956000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27165 2277 28612 144103 145160 145160 1 QAYTGNNSSQIQAAMK ESALAQAQKCFALYRQAYTGNNSSQIQAAM AYTGNNSSQIQAAMKGFEEVIKKFPRCAEG R Q A M K G 3 0 2 0 0 3 0 1 0 1 0 1 1 0 0 2 1 0 1 0 0 0 16 0 1710.7995 O94826 O94826 448 463 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 5.4948E-10 105.46 By MS/MS By MS/MS By matching 1 1 1 1.2407 1.1819 10.603 3 Median 1.1281 1.0674 NaN 1 0 Median 1.3978 1.1819 NaN 1 0 Median 1.2407 1.3195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18210000 7874100 10336000 8602400 3410800 5191600 6000700 2531800 3468900 3606600 1931500 1675100 0 0 0 0 0 0 0 0 0 27166 1728 28613 144104;144105;144106 145161;145162;145163;145164 145162 4 QAYTQFGGK PIPCEQLVTALCDIKQAYTQFGGKRPFGVS ALCDIKQAYTQFGGKRPFGVSLLYIGWDKH K Q A G K R 1 0 0 0 0 2 0 2 0 0 0 1 0 1 0 0 1 0 1 0 0 0 9 0 998.48214 P25789;H0YMZ1;H0YN18;H0YL69;H0YMI6;H0YMA1;H0YKT8;H0YKS0;H0YLC2;H0YMV3 P25789 119 127 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type yes no 2 0.035324 47.082 By MS/MS 1 1.3039 1.257 NaN 1 Median 1.3039 1.257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4314400 1717200 2597300 4314400 1717200 2597300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27167 2138 28614 144107 145165 145165 1 QAYTSAPMVDNELLR AIRKQLVKNEKGTIKQAYTSAPMVDNELLR QAYTSAPMVDNELLRLSLRLFKRKTTCHAP K Q A L R L 2 1 1 1 0 1 1 0 0 0 2 0 1 0 1 1 1 0 1 1 0 0 15 0 1706.8298 Q5T200 Q5T200 1617 1631 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 2 4.5279E-06 87.363 By MS/MS 1 0.64724 0.71429 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64724 0.71429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4597900 2707500 1890500 0 0 0 0 0 0 4597900 2707500 1890500 0 0 0 0 0 0 0 0 0 27168 3082 28615 144108 145166;145167 145167 2 QDAFANFANFSK GMPNIAMTSGTVQPKQDAFANFANFSK___ QPKQDAFANFANFSK_______________ K Q D S K - 3 0 2 1 0 1 0 0 0 0 0 1 0 3 0 1 0 0 0 0 0 0 12 0 1358.6255 Q14677 Q14677 614 625 CLINT1 Clathrin interactor 1 yes yes 2 0.00063015 64.692 By matching By matching By MS/MS By matching 1 1 1 1 0.84286 0.87807 29.057 4 Linear 0.70047 0.68316 NaN 1 0 Median 0.50902 0.45803 NaN 1 0 Median 0.90048 0.93106 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60794 0.64949 NaN 1 0 Median NaN NaN NaN 0 0 Median 11343000 5767000 5575800 2780600 1414100 1366500 149630 97288 52341 7090600 3566900 3523700 0 0 0 1322000 688720 633310 0 0 0 27169 2888 28616 144109;144110;144111;144112 145168;145169 145169 2 QDAQSLHGDIPQK TKKEAQELSQNSAIKQDAQSLHGDIPQKQR IKQDAQSLHGDIPQKQREITLKGFRNGSFG K Q D Q K Q 1 0 0 2 0 3 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1435.7056 Q9NR30 Q9NR30 462 474 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 6.9595E-07 104.22 By MS/MS By matching By matching By matching By matching 2 1 2 4 1 1.0932 1.0131 19.922 10 Median NaN NaN NaN 0 0 Median 1.0932 0.96022 1.8177 2 0 Median 0.98361 1.0694 NaN 1 0 Median 1.1146 1.0132 5.4425 2 0 Median 0.94882 1.0481 33.282 4 0 Median 1.1458 1.0206 NaN 1 0 Median 43039000 20334000 22704000 0 0 0 6677200 3061200 3616000 6409800 3047500 3362300 5149100 2490800 2658300 19681000 9512200 10169000 5121500 2222700 2898800 27170 4076 28617 144113;144114;144115;144116;144117;144118;144119;144120;144121;144122 145170;145171;145172;145173 145171 4 QDAQVVLYR EQKREKEIKSELKMKQDAQVVLYRSYRHGD SELKMKQDAQVVLYRSYRHGDLPDIQIKHS K Q D Y R S 1 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1090.5771 P78527 P78527 2765 2773 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00063785 107.9 By MS/MS By MS/MS 1 1 1.0854 1.0437 16.89 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87187 0.92621 NaN 1 0 Median 1.3512 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8706800 4354700 4352100 0 0 0 0 0 0 7177100 3730200 3446900 1529700 624460 905220 0 0 0 0 0 0 27171 2647 28618 144123;144124 145174;145175;145176;145177 145175 4 QDFVDLQGQLR QPVVIYSSPGVMLPKQDFVDLQGQLRFAAK MLPKQDFVDLQGQLRFAAKLIEGVLDFKVM K Q D L R F 0 1 0 2 0 3 0 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1317.6677 P43155 P43155 127 137 CRAT Carnitine O-acetyltransferase yes yes 2 0.016638 57.598 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27172 2323 28619 144125 145178 145178 1 QDFVQHFSQIVR RMNGDQNSDVYAQEKQDFVQHFSQIVRVLT QEKQDFVQHFSQIVRVLTEDEMGHPEIGDA K Q D V R V 0 1 0 1 0 3 0 0 1 1 0 0 0 2 0 1 0 0 0 2 0 0 12 0 1502.763 P14324;A0A087X1D8;A0A087WVN4;A0A087WTP2 P14324 81 92 FDPS Farnesyl pyrophosphate synthase yes no 3 0.043724 28.206 By MS/MS 1 1.0752 1.0041 NaN 1 Median 1.0752 1.0041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8345700 3121300 5224400 8345700 3121300 5224400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27173 2002 28620 144126 145179 145179 1 QDGQFSVLFTK TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS HVLKQDGQFSVLFTKCDSSPDSAEDVRKLC K Q D T K C 0 0 0 1 0 2 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1268.6401 CON__P12763 CON__P12763 121 131 yes yes 2 0.0020908 78.556 By MS/MS By MS/MS By MS/MS 2 1 3 0.040891 0.038902 165.77 6 Median 0.0099902 0.009183 157.59 2 2 Median 0.0053748 0.0045465 NaN 1 1 Median 0.13288 0.1291 53.91 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147810000 144450000 3362500 104910000 103980000 932230 23286000 23167000 119140 19612000 17301000 2311100 0 0 0 0 0 0 0 0 0 + 27174 755 28621 144127;144128;144129;144130;144131;144132 145180;145181;145182;145183;145184;145185;145186 145183 7 QDHAQQLATAAEER EQQLKEVAEKQEATRQDHAQQLATAAEERE RQDHAQQLATAAEEREASLRERDAALKQLE R Q D E R E 4 1 0 1 0 3 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1566.7386 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 579 592 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 2.4773E-23 194.96 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 2 1 1.2128 1.1386 20.455 10 Median 1.7034 1.7085 NaN 1 0 Median 1.2128 1.0271 5.1886 2 0 Median 0.9795 1.0678 9.1262 3 1 Median 1.3791 1.2141 NaN 1 0 Median 1.1839 1.2234 37.656 2 0 Median 1.7224 1.4045 NaN 1 0 Median 107750000 51344000 56402000 1989300 952790 1036500 13760000 5793500 7966700 68014000 33204000 34811000 5061700 2236000 2825700 17982000 8705300 9276700 938810 453030 485780 27175 2905;77 28622 144133;144134;144135;144136;144137;144138;144139;144140;144141;144142 145187;145188;145189;145190;145191;145192;145193;145194;145195;145196;145197;145198;145199;145200 145190 14 QDHPSSMGVYGQESGGFSGPGENR YSQQSSSYGQQSSFRQDHPSSMGVYGQESG YGQESGGFSGPGENRSMSGPDNRGRGRGGF R Q D N R S 0 1 1 1 0 2 2 6 1 0 0 0 1 1 2 4 0 0 1 1 0 0 24 0 2479.0459 B0QYK0;Q01844 B0QYK0 269 292 EWSR1 RNA-binding protein EWS yes no 3 9.84E-57 196.75 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 4 4 1 1 0.79294 0.77165 25.862 13 Median 0.59216 0.56743 4.3996 2 0 Median 0.89109 0.78365 NaN 1 0 Median 0.64816 0.67285 38.422 4 0 Median 1.0665 0.90506 16.33 4 0 Median 0.75208 0.77165 NaN 1 0 Median 1.149 0.93608 NaN 1 0 Median 127230000 71886000 55345000 29573000 17489000 12084000 1462900 820650 642270 71384000 41118000 30266000 15252000 7362800 7889600 8584400 4620900 3963600 974390 474240 500150 27176 557 28623;28624 144143;144144;144145;144146;144147;144148;144149;144150;144151;144152;144153;144154;144155 145201;145202;145203;145204;145205;145206;145207;145208;145209;145210 145204 217 10 QDIAFAYQR VTIVNILTNRSNAQRQDIAFAYQRRTKKEL RSNAQRQDIAFAYQRRTKKELASALKSALS R Q D Q R R 2 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1110.5458 P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8 P07355 69 77 ANXA2 Annexin A2;Annexin yes no 2 9.5539E-05 147.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 2 2 1.2304 1.0922 65.304 13 Median 1.2229 1.1843 11.45 2 0 Median 1.3276 1.1297 18.368 2 0 Median 1.4812 1.509 28.4 2 0 Median 1.2304 1.0269 59.23 3 0 Median 1.1499 1.2637 3.4079 2 0 Median 0.46365 0.37816 129.45 2 0 Median 375510000 168620000 206890000 190770000 87255000 103520000 37549000 16496000 21054000 83765000 36789000 46976000 52660000 22969000 29691000 9100700 4176100 4924700 1664800 935890 728900 27177 1885 28625 144156;144157;144158;144159;144160;144161;144162;144163;144164;144165;144166;144167;144168 145211;145212;145213;145214;145215;145216;145217;145218;145219;145220;145221;145222;145223;145224;145225;145226;145227 145215 17 QDIEDTASDAK VSEASGQAPPAKAAKQDIEDTASDAKRKRG KAAKQDIEDTASDAKRKRGRPRKKSGGSGE K Q D A K R 2 0 0 3 0 1 1 0 0 1 0 1 0 0 0 1 1 0 0 0 0 0 11 0 1191.5255 P48382;F8W689 P48382 453 463 RFX5 DNA-binding protein RFX5 yes no 2 0.0531 44.203 By MS/MS 1 0.69491 0.74375 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69491 0.74375 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1036700 598980 437750 0 0 0 0 0 0 1036700 598980 437750 0 0 0 0 0 0 0 0 0 27178 2360 28626 144169 145228 145228 1 QDKIYFMAGSSR DITSLDQYVERMKEKQDKIYFMAGSSRKEA KEKQDKIYFMAGSSRKEAESSPFVERLLKK K Q D S R K 1 1 0 1 0 1 0 1 0 1 0 1 1 1 0 2 0 0 1 0 0 0 12 1 1401.6711 P14625 P14625 535 546 HSP90B1 Endoplasmin yes yes 2 0.0040475 87.298 By MS/MS 1 0.76296 0.79421 NaN 1 Median 0.76296 0.79421 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6083800 3182200 2901600 6083800 3182200 2901600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27179 2006 28627 144170 145229 145229 1 QDLEAEVSQLTGEVAK KDALHSEKQQIATEKQDLEAEVSQLTGEVA DLEAEVSQLTGEVAKLTKELEDAKKEMASL K Q D A K L 2 0 0 1 0 2 3 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 16 0 1715.8578 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 535 550 DIAPH1 Protein diaphanous homolog 1 yes no 2 9.2408E-10 116.24 By MS/MS 1 1.1636 1.0045 NaN 1 Median NaN NaN NaN 0 0 Median 1.1636 1.0045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3626700 1664800 1961800 0 0 0 3626700 1664800 1961800 0 0 0 0 0 0 0 0 0 0 0 0 27180 274 28628 144171 145230 145230 1 QDLMNIAGTTLSSK LSSAVDHGSDEVKFRQDLMNIAGTTLSSKL RQDLMNIAGTTLSSKLLTHHKDHFTKLAVE R Q D S K L 1 0 1 1 0 1 0 1 0 1 2 1 1 0 0 2 2 0 0 0 0 0 14 0 1477.7446 P78371;F5GWF6;F8VQ14 P78371 157 170 CCT2 T-complex protein 1 subunit beta yes no 2 0.00039186 71.555 By MS/MS By matching By matching 2 1 1 1.0734 0.98881 13.732 4 Median 1.1201 1.0803 1.7863 2 0 Median 1.0773 0.91658 NaN 1 0 Median 0.82727 0.81597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28379000 13507000 14871000 15356000 7292500 8063900 5317400 2599400 2718000 7705000 3615600 4089400 0 0 0 0 0 0 0 0 0 27181 2644 28629 144172;144173;144174;144175 145231 145231 1 QDLPALEEKPR MNETTAVALAYGIYKQDLPALEEKPRNVVF GIYKQDLPALEEKPRNVVFVDMGHSAYQVS K Q D P R N 1 1 0 1 0 1 2 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 11 1 1294.6881 P34932;A0A087WYC1;A0A087WTS8 P34932 186 196 HSPA4 Heat shock 70 kDa protein 4 yes no 2;3 0.00014384 81.865 By matching By MS/MS 1 3 0.87635 0.84513 80.577 4 Median 0.26062 0.2732 NaN 1 0 Median 0.92463 0.85778 48.119 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23253000 11074000 12179000 803110 578220 224890 22450000 10496000 11954000 0 0 0 0 0 0 0 0 0 0 0 0 27182 2230 28630 144176;144177;144178;144179 145232;145233;145234;145235 145232 4 QDLPGALSSNAIR EERLAGATLLIFANKQDLPGALSSNAIREV NKQDLPGALSSNAIREVLELDSIRSHHWCI K Q D I R E 2 1 1 1 0 1 0 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 13 0 1340.7048 P36404 P36404 127 139 ARL2 ADP-ribosylation factor-like protein 2 yes yes 2 1.0083E-06 98.943 By MS/MS By MS/MS 1 1 0.9831 0.89493 29.816 2 Median 0.72753 0.72481 NaN 1 0 Median 1.3284 1.105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4989800 2653800 2336000 3923000 2183700 1739300 1066800 470150 596680 0 0 0 0 0 0 0 0 0 0 0 0 27183 2254 28631 144180;144181 145236;145237 145236 2 QDLPNAMAISEMTDK VDELRDAVLLLFANKQDLPNAMAISEMTDK QDLPNAMAISEMTDKLGLQSLRNRTWYVQA K Q D D K L 2 0 1 2 0 1 1 0 0 1 1 1 2 0 1 1 1 0 0 0 0 0 15 0 1662.7593 P18085;C9JAK5;U3KQF2 P18085 128 142 ARF4 ADP-ribosylation factor 4 yes no 2 0.00011527 79.659 By MS/MS By matching 1 1 0.87404 0.79251 3.0079 2 Median 0.82071 0.77583 NaN 1 0 Median 0.93084 0.80955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6017300 3232800 2784500 4933000 2699200 2233900 1084300 533600 550680 0 0 0 0 0 0 0 0 0 0 0 0 27184 2055 28632 144182;144183 145238;145239 145239 2 QDLPNAMNAAEITDK EDELRDAVLLVFANKQDLPNAMNAAEITDK QDLPNAMNAAEITDKLGLHSLRHRNWYIQA K Q D D K L 3 0 2 2 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 15 0 1629.7668 P84077;P61204;H0YGG7 P84077 128 142 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 1.124E-09 106.26 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.95491 0.84058 19.934 6 Median 0.85268 0.80294 8.2595 2 0 Median 0.9918 0.84756 2.9497 2 0 Median 1.2727 1.2839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93553 0.74199 NaN 1 0 Median 128680000 63674000 65007000 68888000 34610000 34278000 57482000 27916000 29566000 1129200 574030 555150 0 0 0 0 0 0 1181100 572670 608400 27185 2549 28633;28634 144184;144185;144186;144187;144188;144189 145240;145241;145242;145243;145244;145245;145246;145247;145248;145249 145245 1227 10 QDLQNALEESER FHELRVTEEEINVLKQDLQNALEESERNKE VLKQDLQNALEESERNKEKVRELEEKLVER K Q D E R N 1 1 1 1 0 2 3 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1430.6638 Q9P0K7 Q9P0K7 537 548 RAI14 Ankycorbin yes yes 2 0.0011553 56.404 By matching By MS/MS 1 1 1.0498 1.0162 9.711 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86426 0.94874 NaN 1 0 Median 1.2753 1.0884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3934900 2148300 1786700 0 0 0 0 0 0 2963700 1743900 1219700 971240 404330 566910 0 0 0 0 0 0 27186 4204 28635 144190;144191 145250 145250 1 QDLTTLDVTK GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS PHLSRQDLTTLDVTKLTPLSHEVISRQATI R Q D T K L 0 0 0 2 0 1 0 0 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 0 1132.5976 P41091;Q2VIR3;H7BZU1 P41091 18 27 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.00038264 79.986 By MS/MS By MS/MS By MS/MS 1 1 1 1.2413 1.1758 6.2342 3 Plateau 1.2664 1.1758 NaN 1 0 Median 1.2413 1.0541 NaN 1 0 Median 1.219 1.1728 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37997000 16959000 21038000 11270000 4882500 6387200 7234400 3351700 3882800 19493000 8724400 10768000 0 0 0 0 0 0 0 0 0 27187 2295 28636 144192;144193;144194 145251;145252;145253;145254 145251 4 QDMPNAMPVSELTDK EDELRDAVLLVFANKQDMPNAMPVSELTDK QDMPNAMPVSELTDKLGLQHLRSRTWYVQA K Q D D K L 1 0 1 2 0 1 1 0 0 0 1 1 2 0 2 1 1 0 0 1 0 0 15 0 1674.7593 P84085;C9J1Z8 P84085 128 142 ARF5 ADP-ribosylation factor 5 yes no 2 0.00021536 73.466 By MS/MS By MS/MS 1 1 0.85755 0.77471 8.5986 2 Median 0.77132 0.72901 NaN 1 0 Median 0.95341 0.82327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8416800 4798400 3618400 6301900 3704000 2597900 2114900 1094400 1020500 0 0 0 0 0 0 0 0 0 0 0 0 27188 2665 28637 144195;144196 145255;145256;145257;145258 145256 4 QDNLTIDTQYYLAQQIHPVVAR LTASQRAYAPEQLQKQDNLTIDTQYYLAQQ TQYYLAQQIHPVVARICEPIDGIDAVLIAT K Q D A R I 2 1 1 2 0 4 0 0 1 2 2 0 0 0 1 0 2 0 2 2 0 0 22 0 2585.3238 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1200 1221 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.059055 7.4461 By matching By MS/MS By matching 1 2 1 1.0028 0.93424 28.943 4 Median 1.0005 0.965 NaN 1 0 Median 1.0026 0.87478 4.7203 2 0 Median 1.4357 1.5964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10265000 5056000 5209300 4155500 2022300 2133200 4972700 2541200 2431500 1137100 492480 644580 0 0 0 0 0 0 0 0 0 27189 26 28638 144197;144198;144199;144200 145259 145259 1 QDPESLPFR ELRQALMPTLEALYRQDPESLPFRQPVDPQ LEALYRQDPESLPFRQPVDPQLLGIPDYFD R Q D F R Q 0 1 0 1 0 1 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 9 0 1087.5298 Q92793;I3L466;Q09472 Q92793 1104 1112 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 2 0.027065 51.346 By MS/MS 1 1.2511 1.3866 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2511 1.3866 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431900 1663600 1768300 0 0 0 0 0 0 3431900 1663600 1768300 0 0 0 0 0 0 0 0 0 27190 3557;2748 28639 144201 145260 145260 1 QDPFSPALLYLR Q D L R 1 1 0 1 0 1 0 0 0 0 3 0 0 1 2 1 0 0 1 0 0 0 12 0 1418.7558 REV__H7BYJ3 yes no 2 0.032829 27.115 By MS/MS 2 1.1176 1.2266 0 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1176 1.2266 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5757700 2674900 3082800 0 0 0 0 0 0 5757700 2674900 3082800 0 0 0 0 0 0 0 0 0 + 27191 4526 28640 144202;144203 145261 145261 1 QDPSVLHTEEMR PRKVNELRAFVKMCKQDPSVLHTEEMRFLR MCKQDPSVLHTEEMRFLREWVESMGGKVPP K Q D M R F 0 1 0 1 0 1 2 0 1 0 1 0 1 0 1 1 1 0 0 1 0 0 12 0 1440.6667 P50502;Q3KNR6;Q8NFI4;F8WAQ7 P50502 18 29 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 3 0.0055871 47.915 By MS/MS By matching By MS/MS 1 2 1 1.0184 0.92339 20.271 4 Median 0.85974 0.83616 NaN 1 1 Median 1.2574 1.0862 8.9342 2 0 Median 0.72997 0.73401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16491000 7975400 8515400 6413800 3419000 2994800 6775900 2852400 3923500 3301000 1704000 1597100 0 0 0 0 0 0 0 0 0 27192 2415 28641 144204;144205;144206;144207 145262;145263 145262 1 QDQDAGTIER PDLLSYAAALQCMGRQDQDAGTIERCLEQM QCMGRQDQDAGTIERCLEQMSQEGLKLQAL R Q D E R C 1 1 0 2 0 2 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1131.5156 O00411;K7EMH3 O00411 309 318 POLRMT DNA-directed RNA polymerase, mitochondrial yes no 2 0.011773 42.19 By MS/MS 1 1.3613 1.1923 NaN 1 Median NaN NaN NaN 0 0 Median 1.3613 1.1923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1094400 428570 665800 0 0 0 1094400 428570 665800 0 0 0 0 0 0 0 0 0 0 0 0 27193 1461 28642 144208 145264;145265 145265 2 QDTQAPVVPYWR FTPSLSETVNRDGPRQDTQAPVVPYWRLPG GPRQDTQAPVVPYWRLPGLGIIIYLLKQSA R Q D W R L 1 1 0 1 0 2 0 0 0 0 0 0 0 0 2 0 1 1 1 2 0 0 12 0 1458.7256 Q92621 Q92621 1797 1808 NUP205 Nuclear pore complex protein Nup205 yes yes 2 2.2721E-09 171.56 By MS/MS 1 0.70438 0.76773 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70438 0.76773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18246000 10285000 7961700 0 0 0 0 0 0 18246000 10285000 7961700 0 0 0 0 0 0 0 0 0 27194 3547 28643 144209 145266;145267 145266 2 QDTVSEPVTPASLAALQSDVQPVGHDYVEEVR KSTPVTSAVQIPEVKQDTVSEPVTPASLAA SDVQPVGHDYVEEVRNDEGKVIRFHCKLCE K Q D V R N 3 1 0 3 0 3 3 1 1 0 2 0 0 0 3 3 2 0 1 6 0 0 32 0 3435.6794 Q96KR1 Q96KR1 542 573 ZFR Zinc finger RNA-binding protein yes yes 3 0.0025132 27.165 By MS/MS 1 0.52439 0.57653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52439 0.57653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3760600 2939600 820950 0 0 0 0 0 0 3760600 2939600 820950 0 0 0 0 0 0 0 0 0 27195 3697 28644 144210 145268 145268 1 QDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGK KSTPVTSAVQIPEVKQDTVSEPVTPASLAA VGHDYVEEVRNDEGKVIRFHCKLCECSFND K Q D G K V 3 1 1 4 0 3 4 2 1 0 2 1 0 0 3 3 2 0 1 6 0 0 37 1 3978.9083 Q96KR1 Q96KR1 542 578 ZFR Zinc finger RNA-binding protein yes yes 4 0.0099217 15.497 By MS/MS 1 0.44427 0.50358 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44427 0.50358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3839300 2131500 1707800 0 0 0 0 0 0 3839300 2131500 1707800 0 0 0 0 0 0 0 0 0 27196 3697 28645 144211 145269 145269 1 QDVDDEYGVSQALAR DVSEVDARHIIENAKQDVDDEYGVSQALAR QDVDDEYGVSQALARGLQSYYAVAHAVTER K Q D A R G 2 1 0 3 0 2 1 1 0 0 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1664.7642 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1 P51532 712 726 SMARCA4 Transcription activator BRG1 yes no 2 3.0285E-08 153.74 By MS/MS By MS/MS 1 1 1.1005 1.0783 7.0512 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94122 1.0258 NaN 1 0 Median 1.2868 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14857000 7506200 7350600 0 0 0 0 0 0 14136000 7208600 6927000 721140 297620 423530 0 0 0 0 0 0 27197 366 28646 144212;144213 145270;145271;145272 145271 3 QDVDNASLAR MLQREEAENTLQSFRQDVDNASLARLDLER LQSFRQDVDNASLARLDLERKVESLQEEIA R Q D A R L 2 1 1 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.5258 P08670;B0YJC4;B0YJC5 P08670 208 217 VIM Vimentin yes no 2 1.0956E-15 188.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 3 1 1.1517 1.09 16.49 10 Median 0.91972 0.87081 NaN 1 0 Median 1.3486 1.1334 NaN 1 0 Median 1.061 1.09 2.7244 2 1 Median 1.2005 1.0466 2.4693 2 0 Median 1.2265 1.307 13.861 3 0 Median 0.98695 0.84733 NaN 1 0 Median 83425000 38396000 45030000 19472000 9761200 9710600 16121000 6587700 9532900 3643600 1841800 1801800 1481500 829580 651880 32737000 14305000 18432000 9971200 5070100 4901100 27198 1907 28647 144214;144215;144216;144217;144218;144219;144220;144221;144222;144223 145273;145274;145275;145276;145277;145278;145279;145280;145281;145282;145283;145284 145279 12 QEAATLAANNTQLQAR KGEVLGDVLQLETLKQEAATLAANNTQLQA EAATLAANNTQLQARVEMLETERGQQEAKL K Q E A R V 5 1 2 0 0 3 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 16 0 1698.8649 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 420 435 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 8.3351E-20 186.58 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.97845 0.92846 7.7827 5 Median NaN NaN NaN 0 0 Median 1.1218 0.95817 NaN 1 0 Median 0.91296 0.9951 9.8034 2 0 Median 1.0247 0.90058 NaN 1 0 Median 0.82993 0.87017 NaN 1 1 Median NaN NaN NaN 0 0 Median 59453000 29380000 30073000 0 0 0 6314300 2817400 3497000 45982000 23369000 22613000 2942300 1509100 1433200 4214000 1684200 2529800 0 0 0 27199 2905;77 28648 144224;144225;144226;144227;144228 145285;145286;145287;145288;145289;145290;145291;145292;145293 145286 9 QEAEEAKEALLQASR RKRAQSEAEKLAKERQEAEEAKEALLQASR QEAEEAKEALLQASRDQKKTQEQLALEMAE R Q E S R D 4 1 0 0 0 2 4 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1671.8428 P26038 P26038 394 408 MSN Moesin yes yes 3 0.00010363 57.328 By MS/MS 1 1.1032 1.1323 NaN 1 Median 1.1032 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7658800 3680500 3978300 7658800 3680500 3978300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27200 2139 28649 144229 145294;145295 145294 2 QEAGISEGQGTAGEEEEK FPNEFAKLTVENSPKQEAGISEGQGTAGEE GISEGQGTAGEEEEKKKQKRGGRGQIKQKK K Q E E K K 2 0 0 0 0 2 6 4 0 1 0 1 0 0 0 1 1 0 0 0 0 0 18 0 1847.8021 O43583;F8VVL1 O43583 76 93 DENR Density-regulated protein yes no 2 5.0814E-06 72.29 By matching By MS/MS 1 1 1.1183 1.0068 1.5768 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.066 1.0181 NaN 1 0 Median 1.1732 0.99564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2658500 1379700 1278900 0 0 0 0 0 0 1331700 699880 631780 1326900 679780 647090 0 0 0 0 0 0 27201 1575 28650 144230;144231 145296;145297 145296 2 QEAGISEGQGTAGEEEEKKK FPNEFAKLTVENSPKQEAGISEGQGTAGEE SEGQGTAGEEEEKKKQKRGGRGQIKQKKKT K Q E K K Q 2 0 0 0 0 2 6 4 0 1 0 3 0 0 0 1 1 0 0 0 0 0 20 2 2103.992 O43583;F8VVL1 O43583 76 95 DENR Density-regulated protein yes no 4 0.028535 14.015 By matching By matching By MS/MS 1 2 2 1.1351 1.0818 12.877 5 Median 0.91532 0.95614 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.122 1.2109 15.941 2 0 Median 1.154 1.0767 4.3996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4152300 1835500 2316800 392870 217060 175810 0 0 0 1132400 524770 607620 2627100 1093700 1533400 0 0 0 0 0 0 27202 1575 28651 144232;144233;144234;144235;144236 145298 145298 1 QEALSGSLADHEYTARPNAFGMAQANR QLVTSSSPLPPPEPKQEALSGSLADHEYTA YTARPNAFGMAQANRSTTPMAPGVFLTQRR K Q E N R S 6 2 2 1 0 2 2 2 1 0 2 0 1 1 1 2 1 0 1 0 0 0 27 1 2904.3573 Q9UPP1;H0Y3N9 Q9UPP1 978 1004 PHF8 Histone lysine demethylase PHF8 yes no 4 0.0029893 29.47 By MS/MS 1 0.59745 0.72663 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59745 0.72663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4285800 2931800 1354000 0 0 0 0 0 0 4285800 2931800 1354000 0 0 0 0 0 0 0 0 0 27203 1143 28652 144237 145299 145299 1 QEATLVVGGDGR NFIQSIISTVEPAQRQEATLVVGGDGRFYM AQRQEATLVVGGDGRFYMKEAIQLIARIAA R Q E G R F 1 1 0 1 0 1 1 3 0 0 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1200.6099 P36871;A0A3B3ITK7 P36871 53 64 PGM1 Phosphoglucomutase-1 yes no 2 0.00079637 89.827 By MS/MS By MS/MS 1 1 1.1052 1.0034 14.246 2 Median 1.1651 1.1098 NaN 1 1 Median 1.0484 0.90726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18767000 8093700 10673000 10546000 4715400 5831100 8220600 3378300 4842300 0 0 0 0 0 0 0 0 0 0 0 0 27204 2262 28653 144238;144239 145300;145301 145300 2 QEAVALLQGQR DSEERSSWYWGRLSRQEAVALLQGQRHGVF RLSRQEAVALLQGQRHGVFLVRDSSTSPGD R Q E Q R H 2 1 0 0 0 3 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1211.6622 P46108;I3L297 P46108 21 31 CRK Adapter molecule crk yes no 2 0.00013494 144.12 By MS/MS By matching By matching 2 2 1 1.0032 0.94554 23.95 5 Median 0.96918 0.91469 4.6904 2 0 Median 1.2181 1.0346 8.2434 2 0 Median 0.62555 0.58618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15415000 8339300 7076100 11787000 6344300 5442900 2156000 1049500 1106500 1472300 945480 526820 0 0 0 0 0 0 0 0 0 27205 2340 28654 144240;144241;144242;144243;144244 145302;145303;145304;145305 145304 4 QEDKDDLDVTELTNEDLLDQLVK AAVGRKATKKTDKPRQEDKDDLDVTELTNE VTELTNEDLLDQLVKYGVNPGPIVGTTRKL R Q E V K Y 0 0 1 6 0 2 3 0 0 0 5 2 0 0 0 0 2 0 0 2 0 0 23 1 2687.3025 P42166;P42167;G5E972;H0YJH7 P42166 104 126 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3 1.034E-07 44.5 By MS/MS 4 0.87842 0.94264 5.5666 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87842 0.94264 5.5666 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28222000 14539000 13682000 0 0 0 0 0 0 28222000 14539000 13682000 0 0 0 0 0 0 0 0 0 27206 2306;2307 28655 144245;144246;144247;144248 145306;145307 145306 1 QEDNPFSWKNFVDTVR LKHNTVLMAWPASWKQEDNPFSWKNFVDTV EDNPFSWKNFVDTVRDTTAAHQALLVAKNV K Q E V R D 0 1 2 2 0 1 1 0 0 0 0 1 0 2 1 1 1 1 0 2 0 0 16 1 1980.933 A0A0G2JQE3;H0YB78;A0A0U1RR18;A0A0G2JNW7;Q9Y666 A0A0G2JQE3 159 174 SLC12A7 Solute carrier family 12 member 7 yes no 4 0.061948 10.057 By matching By matching By MS/MS 1 1 1 0.83053 0.94445 29.795 3 Median 0.64622 0.66171 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83053 0.94445 NaN 1 0 Median 1.2388 1.196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4683100 2639900 2043200 850420 509890 340530 0 0 0 2548400 1578900 969520 1284300 551150 733110 0 0 0 0 0 0 27207 282 28656 144249;144250;144251 145308 145308 1 QEDVIATANLSR TMATAKAVAAGNSCRQEDVIATANLSRRAI SCRQEDVIATANLSRRAIADMLRACKEAAY R Q E S R R 2 1 1 1 0 1 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 12 0 1315.6732 Q9Y490 Q9Y490 2198 2209 TLN1 Talin-1 no no 2 3.8985E-06 163.9 By MS/MS By MS/MS 3 1 1.099 0.91531 23.708 4 Median NaN NaN NaN 0 0 Median 0.99664 0.85722 10.04 3 0 Median 1.2436 1.3669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26030000 11700000 14330000 0 0 0 19926000 8898900 11027000 6103700 2800800 3303000 0 0 0 0 0 0 0 0 0 27208 4441 28657 144252;144253;144254;144255 145309;145310;145311;145312;145313 145310 5 QEEELQAKDEELLK WRVFTKVKPLLQVTRQEEELQAKDEELLKV RQEEELQAKDEELLKVKEKQTKVEGELEEM R Q E L K V 1 0 0 1 0 2 5 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1700.8469 P35580 P35580 850 863 MYH10 Myosin-10 yes yes 2 8.9458E-32 212.09 By MS/MS By MS/MS By matching 1 1 1 1.0375 0.99766 12.449 3 Median 1.0375 0.99766 NaN 1 0 Median 1.2527 1.2102 NaN 1 1 Median 0.75915 0.95899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19284000 9615700 9668100 13068000 6556800 6511100 3517700 1455900 2061800 2698200 1602900 1095200 0 0 0 0 0 0 0 0 0 27209 2245 28658 144256;144257;144258 145314;145315;145316 145314 3 QEEEMMAKEEELVK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV RQEEEMMAKEEELVKVREKQLAAENRLTEM R Q E V K V 1 0 0 0 0 1 6 0 0 0 1 2 2 0 0 0 0 0 0 1 0 0 14 1 1721.7852 P35579 P35579 843 856 MYH9 Myosin-9 yes yes 2;3 3.5598E-07 120.86 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1502 1.0995 6.8851 6 Median 1.1502 1.086 1.2543 2 0 Median 1.1391 1.0983 10.344 2 0 Median 0.95944 1.1033 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1849 1.2378 NaN 1 0 Median NaN NaN NaN 0 0 Median 70432000 30799000 39633000 55616000 24568000 31048000 10872000 4474800 6397200 2903200 1329200 1574000 0 0 0 1040300 426790 613460 0 0 0 27210 2244 28659 144259;144260;144261;144262;144263;144264 145317;145318;145319;145320;145321;145322;145323 145319 7 QEEVEQTPLQEALNQLMR LDLPPEKPLTSSLAKQEEVEQTPLQEALNQ VEQTPLQEALNQLMRQLQRKDPSAFFSFPV K Q E M R Q 1 1 1 0 0 4 4 0 0 0 3 0 1 0 1 0 1 0 0 1 0 0 18 0 2155.0579 Q9NPI1 Q9NPI1 128 145 BRD7 Bromodomain-containing protein 7 yes yes 2 0.042361 21.557 By MS/MS 2 0.70345 0.72775 0.31462 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70345 0.72775 0.31462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1170300 654400 515900 0 0 0 0 0 0 1170300 654400 515900 0 0 0 0 0 0 0 0 0 27211 4053 28660 144265;144266 145324;145325 145324 2 QEFAQHANAFHQWIQETR LQKEQRRQEENDKLRQEFAQHANAFHQWIQ AQHANAFHQWIQETRTYLLDGSCMVEESGT R Q E T R T 3 1 1 0 0 4 2 0 2 1 0 0 0 2 0 0 1 1 0 0 0 0 18 0 2240.0511 A0A0D9SF54;Q13813 Q13813 2208 2225 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 7.6967E-07 80.638 By matching By MS/MS By matching 1 1 1 0.79356 0.69435 29.516 3 Median 0.55755 0.54529 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89998 0.981 NaN 1 0 Median 0.79356 0.69435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33758000 18686000 15072000 3342800 2317300 1025500 0 0 0 29971000 16136000 13835000 444710 232920 211790 0 0 0 0 0 0 27212 264;2838 28661 144267;144268;144269 145326;145327 145326 2 QEFEKQDELKR LRATCTTKVKANSVKQEFEKQDELKRSAMR NSVKQEFEKQDELKRSAMRAVAALLTIPEA K Q E K R S 0 1 0 1 0 2 3 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 11 2 1448.726 Q86VP6;A0A0C4DGH5 Q86VP6 1164 1174 CAND1 Cullin-associated NEDD8-dissociated protein 1 no no 3 5.6886E-05 79.201 By MS/MS By MS/MS By MS/MS 1 1 2 1.3723 1.4035 29.78 4 Linear 0.66756 0.75878 NaN 1 0 Median 1.3088 1.2966 NaN 1 0 Median 0.77534 0.88385 33.047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6949600 3143000 3806600 600440 302870 297560 4400900 1967800 2433100 1948300 872310 1076000 0 0 0 0 0 0 0 0 0 27213 3288 28662 144270;144271;144272;144273 145328;145329;145330;145331;145332 145331 5 QEGGDNDLIER EKIRVLSQQAASVVKQEGGDNDLIERIQVD SVVKQEGGDNDLIERIQVDAYFSPIHSQLD K Q E E R I 0 1 1 2 0 1 2 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1244.5633 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6 A0A1B0GWJ0 416 426 ADSL Adenylosuccinate lyase yes no 2 0.0022363 66.19 By MS/MS By MS/MS 1 2 1.067 0.94428 2.9353 3 Median 0.94659 0.94428 NaN 1 0 Median 1.0978 0.93396 4.0531 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11520000 5544000 5975600 3446600 1545800 1900800 8073000 3998300 4074700 0 0 0 0 0 0 0 0 0 0 0 0 27214 200 28663 144274;144275;144276 145333;145334;145335;145336 145333 4 QEGHNLGLLHGDMDQSER VTKKANAEELANNLKQEGHNLGLLHGDMDQ HNLGLLHGDMDQSERNKVISDFKKKDIPVL K Q E E R N 0 1 1 2 0 2 2 3 2 0 3 0 1 0 0 1 0 0 0 0 0 0 18 0 2034.9178 Q86XP3;A0A0A0MSJ0 Q86XP3 520 537 DDX42 ATP-dependent RNA helicase DDX42 yes no 3;4 8.7851E-05 40.844 By MS/MS By matching 5 1 0.8714 0.94626 32.157 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9045 0.99343 26.508 5 2 Median 0.66099 0.56311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23491000 12573000 10917000 0 0 0 0 0 0 21866000 11611000 10255000 1624800 962480 662290 0 0 0 0 0 0 27215 3302 28664 144277;144278;144279;144280;144281;144282 145337;145338;145339;145340 145338 4 QEIFQEQLAAVPEFR PITAVKQPEKVAATRQEIFQEQLAAVPEFR QEIFQEQLAAVPEFRGLGPLFKSSPEPVAL R Q E F R G 2 1 0 0 0 3 3 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 15 0 1803.9155 Q9Y678 Q9Y678 610 624 COPG1 Coatomer subunit gamma-1 yes yes 2 3.9553E-07 90.685 By MS/MS By MS/MS 3 1 0.87904 0.82239 17.329 4 Median 0.93752 0.93579 18.191 3 2 Median 0.82421 0.72273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6648200 3305300 3342900 5066300 2471800 2594500 1581900 833510 748350 0 0 0 0 0 0 0 0 0 0 0 0 27216 4481 28665 144283;144284;144285;144286 145341;145342;145343;145344;145345 145341 5 QEILAALEK LVGYLDRNLEKNSTKQEILAALEKGCSFLP EKNSTKQEILAALEKGCSFLPDPYQKQCDQ K Q E E K G 2 0 0 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1013.5757 Q5BJH1;C9JIZ6;P07602 Q5BJH1 146 154 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D yes no 2 0.0058853 56.258 By MS/MS By MS/MS By matching 2 2 1 1.2429 1.0871 17.191 5 Median 1.0487 0.94878 25.468 2 0 Median 1.3909 1.161 9.2936 2 0 Median 0.96839 0.97822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9115900 3808400 5307500 5673100 2464500 3208600 2782400 1013400 1769000 660430 330530 329900 0 0 0 0 0 0 0 0 0 27217 701 28666 144287;144288;144289;144290;144291 145346;145347 145347 2 QEIQHLFR EAPSTVLSQNLFTPKQEIQHLFREPEKRPP QNLFTPKQEIQHLFREPEKRPPTVVSNTFT K Q E F R E 0 1 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1069.5669 P04844;H0Y5M1 P04844 524 531 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 0.0045158 81.119 By matching By MS/MS By matching By matching By matching 2 2 2 1 1 1.0189 1.0387 84.453 8 Median 0.88575 0.88298 22.229 2 0 Median 0.88719 0.7391 48.87 2 1 Median NaN NaN NaN 0 0 Median 0.42845 0.49755 193.98 2 0 Median 1.0196 1.1459 NaN 1 0 Median 1.6774 1.4199 NaN 1 0 Median 48045000 24932000 23113000 13254000 7440400 5813800 24378000 12988000 11390000 0 0 0 1988300 1533500 454820 3900000 1751300 2148700 4523900 1218100 3305800 27218 1854 28667 144292;144293;144294;144295;144296;144297;144298;144299 145348;145349 145349 2 QEISAAFK ESILTLLTSRSNAQRQEISAAFKTLFGRDL SRSNAQRQEISAAFKTLFGRDLLDDLKSEL R Q E F K T 2 0 0 0 0 1 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 8 0 892.46543 P08758;E9PHT9 P08758 51 58 ANXA5 Annexin A5;Annexin yes no 2 0.008272 63.565 By MS/MS By MS/MS By matching 1 1 1 0.96471 0.78024 11.751 3 Plateau 1.0081 0.91553 NaN 1 0 Median 0.86737 0.72807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7315 0.78024 NaN 1 0 Median NaN NaN NaN 0 0 Median 43113000 21361000 21752000 22945000 10665000 12279000 16453000 8709700 7743300 0 0 0 0 0 0 3715700 1986000 1729600 0 0 0 27219 1909 28668 144300;144301;144302 145350;145351 145350 2 QEITFTDVSEQLMR PQGLQYALNVPISVKQEITFTDVSEQLMRD KQEITFTDVSEQLMRDKKQIREPVDLQKKK K Q E M R D 0 1 0 1 0 2 2 0 0 1 1 0 1 1 0 1 2 0 0 1 0 0 14 0 1695.8138 Q9UQR1 Q9UQR1 116 129 ZNF148 Zinc finger protein 148 yes yes 2 0.00078971 60.434 By MS/MS 1 0.73823 0.79111 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73823 0.79111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1617400 914850 702500 0 0 0 0 0 0 1617400 914850 702500 0 0 0 0 0 0 0 0 0 27220 4364 28669 144303 145352 145352 1 QEIVSLFNAFGR NMPESGPSYEFHLTRQEIVSLFNAFGRIST LTRQEIVSLFNAFGRISTSVKELENFRNLL R Q E G R I 1 1 1 0 0 1 1 1 0 1 1 0 0 2 0 1 0 0 0 1 0 0 12 0 1379.7197 Q96HE7 Q96HE7 438 449 ERO1L ERO1-like protein alpha yes yes 2 0.012955 35.944 By MS/MS 1 0.69002 0.68584 NaN 1 Median 0.69002 0.68584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3769800 2202100 1567700 3769800 2202100 1567700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27221 3666 28670 144304 145353;145354 145353 2 QEKPAEKPAETPVATSPTATDSTSGDSSR SATASSEPAPASAAKQEKPAEKPAETPVAT TSPTATDSTSGDSSRSNLFEDATSALVTGQ K Q E S R S 4 1 0 2 0 1 3 1 0 0 0 2 0 0 4 5 5 0 0 1 0 0 29 2 2944.3898 P54727;H0Y579 P54727 145 173 RAD23B UV excision repair protein RAD23 homolog B yes no 4 3.6922E-05 29.346 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.4998 0.54106 12.425 5 Median 0.45427 0.49962 11.268 2 0 Median 0.57747 0.59174 NaN 1 0 Median 0.41447 0.50967 NaN 1 0 Median 0.59529 0.6336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13347000 8180300 5166900 4508000 2792600 1715300 7446800 4521400 2925400 927200 641880 285320 465270 224380 240890 0 0 0 0 0 0 27222 2486 28671 144305;144306;144307;144308;144309 145355;145356;145357;145358;145359;145360 145355 6 QELDDILK VVRPGLGSKTGSMSKQELDDILKFGTEELF KTGSMSKQELDDILKFGTEELFKDEATDGG K Q E L K F 0 0 0 2 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 972.51278 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9;Q8TDI0;K7EMY3;Q12873 Q14839 1213 1220 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.012861 54.157 By MS/MS By matching By matching 1 1 1 1.0495 1.1284 10.143 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0495 1.157 NaN 1 0 Median 1.0322 0.95984 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2949 1.1284 NaN 1 0 Median 16019000 7430800 8588100 0 0 0 0 0 0 15766000 7311200 8455100 133850 55161 78690 0 0 0 118770 64499 54268 27223 246;3471;2766 28672 144310;144311;144312 145361;145362 145362 2 QELEEILHDLESR FAEAEEMRARLAAKKQELEEILHDLESRVE KKQELEEILHDLESRVEEEEERNQILQNEK K Q E S R V 0 1 0 1 0 1 4 0 1 1 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1609.7948 P35580 P35580 918 930 MYH10 Myosin-10 yes yes 2 0.04286 42.001 By MS/MS 1 1.1491 0.95608 NaN 1 Median NaN NaN NaN 0 0 Median 1.1491 0.95608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1462400 645550 816880 0 0 0 1462400 645550 816880 0 0 0 0 0 0 0 0 0 0 0 0 27224 2245 28673 144313 145363 145363 1 QELILSNSEDK RGHYNNVSCAVFHPRQELILSNSEDKSIRV FHPRQELILSNSEDKSIRVWDMSKRTGVQT R Q E D K S 0 0 1 1 0 1 2 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1274.6354 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 261 271 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00017615 98.048 By MS/MS 2 1.2347 1.0488 NaN 1 Median NaN NaN NaN 0 0 Median 1.2347 1.0488 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6085100 2923300 3161800 0 0 0 6085100 2923300 3161800 0 0 0 0 0 0 0 0 0 0 0 0 27225 2473 28674 144314;144315 145364;145365 145365 2 QELLEALTK KEACRAYGLKSGLKKQELLEALTKHFQD__ KSGLKKQELLEALTKHFQD___________ K Q E T K H 1 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1043.5863 P12956;B1AHC9 P12956 597 605 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0053299 57.96 By matching By matching By MS/MS By matching 1 1 1 1 1.1175 1.0438 12.126 4 Median 1.2128 1.164 NaN 1 0 Median 1.3022 1.1251 NaN 1 0 Median 0.97331 0.96835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0296 0.90201 NaN 1 0 Median 34455000 16614000 17842000 4329300 1725500 2603800 1947800 820650 1127100 28091000 14017000 14074000 0 0 0 0 0 0 86738 50049 36689 27226 1985 28675 144316;144317;144318;144319 145366;145367 145366 2 QELLEEVKKELQK CTPSSSDYSDLQRVKQELLEEVKKELQKVK VKQELLEEVKKELQKVKEEIIEAFVQELRK K Q E Q K V 0 0 0 0 0 2 4 0 0 0 3 3 0 0 0 0 0 0 0 1 0 0 13 2 1612.9036 P50552 P50552 349 361 VASP Vasodilator-stimulated phosphoprotein yes yes 2 0.016336 80.763 By MS/MS 1 0.96418 0.83748 NaN 1 Median NaN NaN NaN 0 0 Median 0.96418 0.83748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127700000 66968000 60735000 0 0 0 127700000 66968000 60735000 0 0 0 0 0 0 0 0 0 0 0 0 27227 2416 28676 144320 145368 145368 1 QELSFAAR AAVDLIIKSHQGLDRQELSFAARSFYYKLR SHQGLDRQELSFAARSFYYKLRAAEQYTPK R Q E A R S 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 920.47158 P49327;A0A0U1RQF0 P49327 2414 2421 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0023926 109.01 By MS/MS 1 1.7446 1.4873 NaN 1 Median NaN NaN NaN 0 0 Median 1.7446 1.4873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9441200 3370600 6070600 0 0 0 9441200 3370600 6070600 0 0 0 0 0 0 0 0 0 0 0 0 27228 2377 28677 144321 145369;145370 145370 2 QELSHALYQHDAACR MLHSFTLRQQLQTTRQELSHALYQHDAACR QELSHALYQHDAACRVIARLTKEVTAAREA R Q E C R V 3 1 0 1 1 2 1 0 2 0 2 0 0 0 0 1 0 0 1 0 0 0 15 0 1797.8217 Q9UMS4;F5GY56;F5H2I0 Q9UMS4 101 115 PRPF19 Pre-mRNA-processing factor 19 yes no 3 8.8537E-05 66.285 By MS/MS 1 1.0463 0.89561 NaN 1 Median NaN NaN NaN 0 0 Median 1.0463 0.89561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2900400 1533800 1366700 0 0 0 2900400 1533800 1366700 0 0 0 0 0 0 0 0 0 0 0 0 27229 4334 28678 144322 145371;145372 145371 2 QELTSQAERAEELGQELK REEAEKQRVASENLRQELTSQAERAEELGQ TSQAERAEELGQELKAWQEKFFQKEQALST R Q E L K A 2 1 0 0 0 3 5 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 18 1 2058.0229 A0A087WY61;Q14980 Q14980 1313 1330 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 3.3299E-08 89.982 By MS/MS By MS/MS 2 1 0.91622 1.0975 14.508 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98804 1.1534 7.0291 2 0 Median NaN NaN NaN 0 0 Median 0.80284 0.91084 NaN 1 1 Median NaN NaN NaN 0 0 Median 60944000 29998000 30946000 0 0 0 0 0 0 51370000 24651000 26720000 0 0 0 9574100 5347500 4226600 0 0 0 27230 2905;77 28679 144323;144324;144325 145373;145374;145375 145373 3 QEMQEVQSSR TINGHNAEVRKALSRQEMQEVQSSRSGRGG KALSRQEMQEVQSSRSGRGGNFGFGDSRGG R Q E S R S 0 1 0 0 0 3 2 0 0 0 0 0 1 0 0 2 0 0 0 1 0 0 10 0 1220.5455 P22626 P22626 191 200 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 2.6699E-15 182.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 9 2 1.101 1.0438 13.52 16 Median NaN NaN NaN 0 0 Median 1.4064 1.2072 NaN 1 0 Median 1.0366 1.0267 0.58386 3 0 Median 1.1262 0.9916 NaN 1 1 Median 1.0563 1.0932 16.001 9 0 Median 1.2774 1.0432 0.26603 2 0 Median 97278000 46998000 50281000 0 0 0 2189700 1030500 1159200 5190000 2571700 2618300 1733900 767640 966220 84467000 40988000 43479000 3697600 1640200 2057400 27231 2103 28680;28681 144326;144327;144328;144329;144330;144331;144332;144333;144334;144335;144336;144337;144338;144339;144340;144341 145376;145377;145378;145379;145380;145381;145382;145383;145384;145385;145386;145387;145388;145389;145390;145391;145392;145393;145394;145395;145396;145397;145398 145383 863 23 QENGASVILR RFYEQMNGPVAGASRQENGASVILRDIARA AGASRQENGASVILRDIARARENIQKSLAG R Q E L R D 1 1 1 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1085.5829 E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 39 48 EEF1D Elongation factor 1-delta no no 2 0.00040727 76.827 By matching By matching By matching By MS/MS 2 2 2 2 1.0214 0.92704 15.721 8 Median 0.99835 0.98198 8.9606 2 0 Median 1.0439 0.89972 27.606 2 0 Median 1.0285 1.0667 19.03 2 0 Median 1.0272 0.87283 5.7324 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100430000 49505000 50921000 23834000 12533000 11301000 26190000 13839000 12351000 18238000 8232900 10005000 32163000 14899000 17264000 0 0 0 0 0 0 27232 985;2174 28682 144342;144343;144344;144345;144346;144347;144348;144349 145399 145399 1 QEPLLIGSTK PQELNGITRALCATRQEPLLIGSTKSNMGH LCATRQEPLLIGSTKSNMGHPEPASGLAAL R Q E T K S 0 0 0 0 0 1 1 1 0 1 2 1 0 0 1 1 1 0 0 0 0 0 10 0 1084.6128 P49327;A0A0U1RQF0 P49327 317 326 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0020106 61.78 By MS/MS 2 1.446 1.2805 12.846 2 Median NaN NaN NaN 0 0 Median 1.446 1.2805 12.846 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21848000 8689600 13158000 0 0 0 21848000 8689600 13158000 0 0 0 0 0 0 0 0 0 0 0 0 27233 2377 28683 144350;144351 145400;145401;145402 145402 3 QEPYTLPQGFTWDALDLGDR VNTHGPVEPDKDNIRQEPYTLPQGFTWDAL LPQGFTWDALDLGDRGVLKELYTLLNENYV R Q E D R G 1 1 0 3 0 2 1 2 0 0 3 0 0 1 2 0 2 1 1 0 0 0 20 0 2321.0964 P30419 P30419 147 166 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 0.042303 20.106 By MS/MS 1 0.87564 0.91807 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87564 0.91807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 849540 458610 390940 0 0 0 0 0 0 849540 458610 390940 0 0 0 0 0 0 0 0 0 27234 2193 28684 144352 145403 145403 1 QEQATEENAGVPVGPHLSLAYEDK SKSLLNEIESIYDERQEQATEENAGVPVGP GVPVGPHLSLAYEDKQILEDAAALIIHHVK R Q E D K Q 3 0 1 1 0 2 4 2 1 0 2 1 0 0 2 1 1 0 1 2 0 0 24 0 2581.2296 Q96ST3 Q96ST3 761 784 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 1.0077E-05 37.688 By MS/MS By matching 1 1 0.84649 0.83426 40.089 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58238 0.62833 NaN 1 0 Median 1.2304 1.1077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6418800 4013200 2405600 0 0 0 0 0 0 6063500 3859700 2203800 355270 153510 201760 0 0 0 0 0 0 27235 3737 28685 144353;144354 145404 145404 1 QEQHEAQAQVAELELQLR SRKVEELQACVETARQEQHEAQAQVAELEL HEAQAQVAELELQLRSEQQKATEKERVAQE R Q E L R S 3 1 0 0 0 5 4 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 18 0 2119.0658 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 664 681 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 5.1184E-60 181.51 By MS/MS 3 1.2074 1.3161 3.27 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2074 1.3161 3.27 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54207000 25262000 28945000 0 0 0 0 0 0 54207000 25262000 28945000 0 0 0 0 0 0 0 0 0 27236 2905;77 28686 144355;144356;144357 145405;145406;145407 145405 3 QEQIDNQYHSLLELGEK SRENLLEEQGSIALRQEQIDNQYHSLLELG QIDNQYHSLLELGEKRKGMLEKSCKKFMLF R Q E E K R 0 0 1 1 0 3 3 1 1 1 3 1 0 0 0 1 0 0 1 0 0 0 17 0 2042.9909 A0A0D9SF54 A0A0D9SF54 1046 1062 SPTAN1 yes yes 3 3.185E-06 80.738 By MS/MS By matching By matching 1 2 1 1.1045 1.0097 7.8723 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85282 0.94096 NaN 1 0 Median 1.1889 1.0835 5.5322 2 0 Median NaN NaN NaN 0 0 Median 1.0811 0.97841 NaN 1 0 Median 13873000 7276900 6596300 0 0 0 0 0 0 12360000 6594600 5765100 597510 260190 337320 0 0 0 915870 422040 493830 27237 264 28687 144358;144359;144360;144361 145408;145409 145409 2 QEQIQAMPLADSQAVR SADPLGAWLQDARRRQEQIQAMPLADSQAV EQIQAMPLADSQAVREQLRQEQALLEEIER R Q E V R E 3 1 0 1 0 4 1 0 0 1 1 0 1 0 1 1 0 0 0 1 0 0 16 0 1783.8887 Q15149;H0YDN1 Q15149 1367 1382 PLEC Plectin yes no 2 3.5933E-10 107.85 By MS/MS 1 1.0799 1.0801 NaN 1 Median 1.0799 1.0801 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5401000 2324900 3076100 5401000 2324900 3076100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27238 2933 28688 144362 145410 145410 1 QEQQEGPVGPAPSRPALQEK DRKAIARFQQGQQGRQEQQEGPVGPAPSRP GPVGPAPSRPALQEKQPEKEEEEEAGESVE R Q E E K Q 2 1 0 0 0 4 3 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 1 2145.0814 Q8TDD1 Q8TDD1 612 631 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 3.3953E-07 50.938 By MS/MS By matching 1 1 0.63293 0.63141 2.5114 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56608 0.64272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70768 0.62029 NaN 1 0 Median 5463000 3365900 2097100 0 0 0 0 0 0 4647000 2897800 1749200 0 0 0 0 0 0 816030 468130 347910 27239 3470 28689 144363;144364 145411 145411 1 QEQVTAAVAHAVEQQMQK QWNLQQQEQHLLALRQEQVTAAVAHAVEQQ VTAAVAHAVEQQMQKLLEETQLDMNEFDNL R Q E Q K L 4 0 0 0 0 5 2 0 1 0 0 1 1 0 0 0 1 0 0 3 0 0 18 0 1994.9844 J3QK89;Q8IWX8 J3QK89 128 145 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 3 0.0010755 28.869 By matching By matching By MS/MS 1 1 1 0.87752 0.93118 2.925 3 Median NaN NaN NaN 0 0 Median 1.0565 0.96198 NaN 1 0 Median 0.85841 0.93118 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87752 0.90744 NaN 1 0 Median NaN NaN NaN 0 0 Median 9246100 4338700 4907400 0 0 0 331900 178420 153480 4726900 2241100 2485800 0 0 0 4187400 1919200 2268200 0 0 0 27240 1338 28690 144365;144366;144367 145412 145412 1 QESPAPEPPTQHSYTYNVSNLDVR GYTLKSQLDILSLLKQESPAPEPPTQHSYT TQHSYTYNVSNLDVRQLSAPPPEEPSPPPS K Q E V R Q 1 1 2 1 0 2 2 0 1 0 1 0 0 0 4 3 2 0 2 2 0 0 24 0 2728.2729 O14686 O14686 4881 4904 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 1.8114E-08 48.641 By MS/MS 2 0.51681 0.56333 20.57 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51681 0.56333 20.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9043000 6159700 2883300 0 0 0 0 0 0 9043000 6159700 2883300 0 0 0 0 0 0 0 0 0 27241 1490 28691 144368;144369 145413 145413 1 QETSLTSHDLFDIDPVVAR VDLPLGLPFYKWMLRQETSLTSHDLFDIDP LTSHDLFDIDPVVARSVYHLEDIVRQKKRL R Q E A R S 1 1 0 3 0 1 1 0 1 1 2 0 0 1 1 2 2 0 0 2 0 0 19 0 2142.0593 Q14669;H7C2Y1 Q14669 1729 1747 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 3 0.057601 8.4943 By matching By MS/MS 1 1 1.2995 1.2891 9.8604 2 Median NaN NaN NaN 0 0 Median 1.3544 1.2023 NaN 1 0 Median 1.2468 1.3822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676700 1698400 1978200 0 0 0 306990 113450 193540 3369700 1585000 1784700 0 0 0 0 0 0 0 0 0 27242 2886 28692 144370;144371 145414 145414 1 QEVLRRAEATAASTSR PDGPDAPADRQQYLRQEVLRRAEATAASTS EVLRRAEATAASTSRSLALMYESEKVGVAS R Q E S R S 4 3 0 0 0 1 2 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 16 2 1744.918 O95721 O95721 47 62 SNAP29 Synaptosomal-associated protein 29 yes yes 4 0.063797 10.057 By MS/MS 1 0.45798 0.51046 NaN 1 Median 0.45798 0.51046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3108900 1722400 1386600 3108900 1722400 1386600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27243 1788 28693 144372 145415 145415 1 QEVPSWLENMAYEHHYK INITKDLLDLLVEAKQEVPSWLENMAYEHH VPSWLENMAYEHHYKGSSRGRSKSSRFSGG K Q E Y K G 1 0 1 0 0 1 3 0 2 0 1 1 1 0 1 1 0 1 2 1 0 0 17 0 2159.9735 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 564 580 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 4 0.010446 22.63 By MS/MS By matching By matching 2 1 2 1.0292 1.0404 7.8594 5 Median 0.97272 0.95822 3.9066 2 0 Median NaN NaN NaN 0 0 Median 1.0292 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1138 1.1107 3.6405 2 0 Median NaN NaN NaN 0 0 Median 19040000 8705200 10335000 4465100 2107300 2357700 0 0 0 12003000 5472900 6530500 0 0 0 2571700 1125000 1446700 0 0 0 27244 263 28694 144373;144374;144375;144376;144377 145416 145416 1 QEVQDLQASLKEEK ESNLALKRDDVTLLRQEVQDLQASLKEEKW RQEVQDLQASLKEEKWYSEELKKELEKYQG R Q E E K W 1 0 0 1 0 3 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 14 1 1643.8366 Q15075 Q15075 90 103 EEA1 Early endosome antigen 1 yes yes 3 0.0012849 38.337 By MS/MS By matching 1 1 1.0604 1.0339 9.3878 2 Median 0.98798 0.96747 NaN 1 0 Median 1.1381 1.1048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8191700 3842500 4349200 6340600 2993800 3346800 1851200 848760 1002400 0 0 0 0 0 0 0 0 0 0 0 0 27245 2926 28695 144378;144379 145417 145417 1 QEYDESGPSIVHR ILASLSTFQQMWISKQEYDESGPSIVHRKC SKQEYDESGPSIVHRKCF____________ K Q E H R K 0 1 0 1 0 1 2 1 1 1 0 0 0 0 1 2 0 0 1 1 0 0 13 0 1515.6954 P63261;P60709;A0A2R8YFE2;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7 P63261 360 372 ACTG1;ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 2;3 3.7034E-41 218.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 9 5 2 3 3 0.97155 0.87297 32.746 28 Median 0.93219 0.92539 10.358 6 1 Median 1.029 0.87581 9.5395 9 0 Median 0.721 0.79859 11.136 5 1 Median 1.0796 0.90436 5.6725 2 0 Median 0.73597 0.76989 87.565 3 0 Median 1.2044 0.97782 15.938 3 0 Median 1292500000 680670000 611860000 368470000 190170000 178300000 436960000 211540000 225420000 404690000 234850000 169850000 35048000 16564000 18485000 36638000 22305000 14333000 10719000 5250800 5468000 27246 2625;3181 28696 144380;144381;144382;144383;144384;144385;144386;144387;144388;144389;144390;144391;144392;144393;144394;144395;144396;144397;144398;144399;144400;144401;144402;144403;144404;144405;144406;144407 145418;145419;145420;145421;145422;145423;145424;145425;145426;145427;145428;145429;145430;145431;145432;145433;145434;145435;145436;145437;145438;145439;145440;145441;145442;145443;145444;145445;145446;145447;145448;145449;145450;145451;145452;145453;145454;145455;145456;145457;145458;145459;145460;145461;145462;145463;145464;145465;145466;145467;145468 145452 51 QEYDESGPSIVHRK ILASLSTFQQMWISKQEYDESGPSIVHRKC KQEYDESGPSIVHRKCF_____________ K Q E R K C 0 1 0 1 0 1 2 1 1 1 0 1 0 0 1 2 0 0 1 1 0 0 14 1 1643.7903 P63261;P60709;A0A2R8YFE2;Q6S8J3;A5A3E0;P0CG38;P0CG39;Q9BYX7 P63261 360 373 ACTG1;ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 3;4 0.0060859 40.552 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.9498 1.013 11.652 5 Median 0.9498 1.017 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8384 0.95271 NaN 1 0 Median 1.2681 1.1174 13.871 2 0 Median 0.84366 0.90709 NaN 1 0 Median NaN NaN NaN 0 0 Median 5283700 2458300 2825400 2043200 1008400 1034800 0 0 0 885560 438180 447390 1215900 544210 671740 1139100 467510 671550 0 0 0 27247 2625;3181 28697 144408;144409;144410;144411;144412;144413 145469;145470;145471;145472;145473 145470 5 QEYEQLIAK VAPGKDLTKTLNDMRQEYEQLIAKNRKDIE TLNDMRQEYEQLIAKNRKDIENQYETQITQ R Q E A K N 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1120.5764 P35527;CON__P35527;K7EQQ3 P35527 328 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.8786E-05 127.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 4 7 1 1 0.097007 0.083004 124.38 19 Median 0.48935 0.46391 161.36 2 2 Median 0.097007 0.083004 53.063 5 5 Median 0.17374 0.17871 18.188 3 3 Median 0.066514 0.057681 28.014 7 7 Median 5.196 5.7492 NaN 1 1 Median 0.23839 0.19774 NaN 1 1 Median 110110000 84676000 25432000 8157400 5030100 3127300 38412000 33632000 4779600 23261000 20061000 3199800 20558000 19072000 1486000 16917000 4817300 12100000 2802300 2062700 739640 + 27248 2242 28698 144414;144415;144416;144417;144418;144419;144420;144421;144422;144423;144424;144425;144426;144427;144428;144429;144430;144431;144432;144433 145474;145475;145476;145477;145478;145479;145480;145481;145482;145483;145484;145485;145486;145487;145488;145489;145490;145491;145492;145493 145489 20 QEYLDTLYR GRMLFDYLADKHGFRQEYLDTLYRYAKFQY DKHGFRQEYLDTLYRYAKFQYECGNYSGAA R Q E Y R Y 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 9 0 1199.5823 P60228;E5RGA2;H0YBR5 P60228 125 133 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0061166 55.549 By MS/MS By matching By matching 1 1 1 1.4888 1.2985 11.285 3 Median 1.2884 1.2451 NaN 1 0 Median 1.4888 1.2985 NaN 1 0 Median 1.5394 1.5407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14607000 5657800 8949500 7815700 3110000 4705700 916050 385750 530300 5875500 2162000 3713500 0 0 0 0 0 0 0 0 0 27249 2524 28699 144434;144435;144436 145494 145494 1 QEYVDYSESAK DKHGKPTDSTPATWKQEYVDYSESAKKEVV ATWKQEYVDYSESAKKEVVAEVVKAPQVVA K Q E A K K 1 0 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 11 0 1317.5725 O60832 O60832 414 424 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.062325 42.718 By MS/MS 1 1.543 1.5785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.543 1.5785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1567800 588460 979390 0 0 0 0 0 0 1567800 588460 979390 0 0 0 0 0 0 0 0 0 27250 1634 28700 144437 145495 145495 1 QFAEMYVAK VGFGSGLHGWAFTLKQFAEMYVAKFAAKGE WAFTLKQFAEMYVAKFAAKGEGQLGPAERA K Q F A K F 2 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 9 0 1085.5216 P13639 P13639 227 235 EEF2 Elongation factor 2 yes yes 2 0.0061752 55.37 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.13 1.1135 27.911 8 Median 1.3067 1.2617 13.716 3 1 Median 0.71215 0.7114 23.732 2 0 Median 1.1196 1.1584 7.4625 2 0 Median 1.1393 0.99007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166440000 78144000 88294000 46879000 18840000 28039000 97164000 48740000 48424000 21112000 9915500 11196000 1283000 648310 634700 0 0 0 0 0 0 27251 1992 28701 144438;144439;144440;144441;144442;144443;144444;144445 145496;145497;145498;145499;145500;145501;145502 145499 7 QFAPEYEK TVLLEFYAPWCGHCKQFAPEYEKIANILKD PWCGHCKQFAPEYEKIANILKDKDPPIPVA K Q F E K I 1 0 0 0 0 1 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 8 0 1010.4709 P13667;A0A499FI48;C9JMN9 P13667 96 103 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.012155 55.531 By MS/MS By MS/MS 1 1 1.0938 1.0009 39.745 2 Median 0.79264 0.75567 NaN 1 0 Median 1.5094 1.3257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7375100 3426400 3948700 4031300 2106700 1924600 3343800 1319700 2024100 0 0 0 0 0 0 0 0 0 0 0 0 27252 1993 28702 144446;144447 145503;145504 145503 2 QFASQANVVGPWIQTK LEEQSKQQSNEHLRRQFASQANVVGPWIQT FASQANVVGPWIQTKMEEIGRISIEMNGTL R Q F T K M 2 0 1 0 0 3 0 1 0 1 0 1 0 1 1 1 1 1 0 2 0 0 16 0 1772.921 O43707;F5GXS2;H7C144 O43707 653 668 ACTN4 Alpha-actinin-4 yes no 2 0.00050587 45.915 By MS/MS 1 0.8313 0.82294 NaN 1 Median 0.8313 0.82294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2917300 1580900 1336400 2917300 1580900 1336400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27253 1585 28703 144448 145505 145505 1 QFAYQNSWGLTTR MFEIVFEDPKIPGEKQFAYQNSWGLTTRTI EKQFAYQNSWGLTTRTIGVMTMVHGDNMGL K Q F T R T 1 1 1 0 0 2 0 1 0 0 1 0 0 1 0 1 2 1 1 0 0 0 13 0 1570.7528 P07814 P07814 1266 1278 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 3.4687E-05 125.22 By MS/MS By matching By matching 1 2 1 1.192 1.0774 10.839 4 Linear 1.177 1.1046 NaN 1 0 Median 1.0909 0.94851 8.1454 2 0 Median NaN NaN NaN 0 0 Median 1.0091 0.87426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21841000 10250000 11591000 14803000 7067200 7735600 6909600 3132100 3777400 0 0 0 128560 50295 78262 0 0 0 0 0 0 27254 1892 28704 144449;144450;144451;144452 145506;145507 145506 2 QFEDEKANWEAQQR KNLEAQHKELEEKRRQFEDEKANWEAQQRI RQFEDEKANWEAQQRILEQQNSSRTLEKNK R Q F Q R I 2 1 1 1 0 3 3 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 14 1 1777.802 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2;Q5JXL7 E7ES33 383 396 SEPT7;DKFZp586I031 Septin-7 yes no 3 0.00027825 57.434 By MS/MS By MS/MS 1 1 1.0049 0.98865 17.934 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85882 0.8709 NaN 1 0 Median 1.1758 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29936000 13687000 16249000 0 0 0 0 0 0 10593000 5489400 5103700 19343000 8197900 11145000 0 0 0 0 0 0 27255 870 28705 144453;144454 145508;145509;145510;145511 145511 4 QFESLPATHIR QQRHQLKHRELFLSRQFESLPATHIRGKCS FLSRQFESLPATHIRGKCSVTLLNETDILS R Q F I R G 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 11 0 1297.6779 O94776 O94776 93 103 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 0.0016986 57.59 By MS/MS 2 0.97312 0.98704 4.501 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97312 0.98704 4.501 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33497000 15989000 17508000 0 0 0 0 0 0 33497000 15989000 17508000 0 0 0 0 0 0 0 0 0 27256 1723 28706 144455;144456 145512;145513;145514 145514 3 QFFNSSVIDVFNQR IDNYFDLRVLQSYLKQFFNSSVIDVFNQRN KQFFNSSVIDVFNQRNKKSIFPYSVSLPQS K Q F Q R N 0 1 2 1 0 2 0 0 0 1 0 0 0 3 0 2 0 0 0 2 0 0 14 0 1699.8318 Q8NCM8;H0YDE0 Q8NCM8 3946 3959 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.00081363 59.542 By MS/MS 1 0.89828 0.9077 NaN 1 Median 0.89828 0.9077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1929700 1054900 874790 1929700 1054900 874790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27257 3418 28707 144457 145515 145515 1 QFFVAVER RILVKRDELTLEGIKQFFVAVEREEWKFDT LTLEGIKQFFVAVEREEWKFDTLCDLYDTL K Q F E R E 1 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 8 0 994.52362 P38919;I3L3H2 P38919 253 260 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.010907 57.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.3401 1.2828 12.229 5 Median NaN NaN NaN 0 0 Median 1.1673 1.0165 NaN 1 0 Median 1.1994 1.1779 NaN 1 0 Median 1.5764 1.3706 NaN 1 0 Median 1.3401 1.346 NaN 1 0 Median 1.4893 1.2828 NaN 1 0 Median 35212000 14924000 20288000 0 0 0 6025400 2656100 3369300 16410000 6986900 9422700 3419000 1237700 2181300 7089000 3291200 3797800 2269100 751970 1517100 27258 2278 28708 144458;144459;144460;144461;144462 145516;145517;145518;145519 145516 4 QFHATHYHPSNAR GDPLCIPELTWEQLKQFHATHYHPSNARFF LKQFHATHYHPSNARFFTYGNFPLEQHLKQ K Q F A R F 2 1 1 0 0 1 0 0 3 0 0 0 0 1 1 1 1 0 1 0 0 0 13 0 1564.7284 Q5JRX3 Q5JRX3 252 264 PITRM1 Presequence protease, mitochondrial yes yes 3 0.010372 26.124 By MS/MS 1 0.86295 0.76378 NaN 1 Median NaN NaN NaN 0 0 Median 0.86295 0.76378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 570790 275320 295470 0 0 0 570790 275320 295470 0 0 0 0 0 0 0 0 0 0 0 0 27259 3050 28709 144463 145520;145521 145521 2 QFILVMNALDNR HDSIMNPDYNVEFFRQFILVMNALDNRAAR FFRQFILVMNALDNRAARNHVNRMCLAADV R Q F N R A 1 1 2 1 0 1 0 0 0 1 2 0 1 1 0 0 0 0 0 1 0 0 12 0 1432.7497 Q9UBT2;K7EPL2 Q9UBT2 108 119 UBA2 SUMO-activating enzyme subunit 2 yes no 2 5.8471E-06 111.65 By MS/MS By MS/MS 2 1 1.0768 1.0223 4.6013 3 Plateau 1.0699 1.0157 0.90416 2 2 Median 1.0857 0.93866 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20058000 9569800 10488000 13700000 6441000 7259200 6357700 3128900 3228800 0 0 0 0 0 0 0 0 0 0 0 0 27260 4247 28710 144464;144465;144466 145522;145523;145524 145522 3 QFINLMLPMK QFLPVPELMPFRLTRQFINLMLPMKETGLM FRLTRQFINLMLPMKETGLMYSIMVHALRA R Q F M K E 0 0 1 0 0 1 0 0 0 1 2 1 2 1 1 0 0 0 0 0 0 0 10 0 1233.6614 P78527;H0YG84 P78527 3966 3975 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 0.0090761 45.68 By MS/MS By matching By MS/MS By matching By matching 2 2 3 2 1 0.88214 0.87919 9.526 10 Median 0.90544 0.87919 0.98775 2 0 Median 1.0023 0.87266 4.5533 2 0 Median 0.81773 0.90033 4.1601 3 0 Median 0.83328 0.76003 6.9524 2 0 Median 1.0105 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median 31944000 17333000 14611000 13068000 7013400 6054200 4097400 2045200 2052200 13723000 7664400 6058700 403100 196000 207100 652790 413680 239120 0 0 0 27261 2647 28711 144467;144468;144469;144470;144471;144472;144473;144474;144475;144476 145525;145526;145527 145526 3 QFLEVELDQAR AEENRGLGERANLGRQFLEVELDQAREKYV NLGRQFLEVELDQAREKYVQELAAVRADAE R Q F A R E 1 1 0 1 0 2 2 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1346.683 A0A087WY61;K4DIE0;Q14980 Q14980 1463 1473 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 8.6493E-05 150.35 By MS/MS By MS/MS 1 1 0.90222 0.87001 2.6271 2 Median NaN NaN NaN 0 0 Median 1.0389 0.88633 NaN 1 0 Median 0.78351 0.854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30286000 14803000 15484000 0 0 0 8076900 3705000 4371800 22209000 11098000 11112000 0 0 0 0 0 0 0 0 0 27262 2905;77 28712 144477;144478 145528;145529;145530 145528 3 QFLFRPWDVTK IVTDMDTIEKSNLNRQFLFRPWDVTKLKSD NLNRQFLFRPWDVTKLKSDTAAAAVRQMNP R Q F T K L 0 1 0 1 0 1 0 0 0 0 1 1 0 2 1 0 1 1 0 1 0 0 11 1 1435.7612 P22314 P22314 516 526 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.00065313 99.815 By MS/MS By matching By matching 1 2 1 0.9633 0.95292 105.18 4 Median 0.87287 0.9103 NaN 1 0 Median 1.2272 1.1474 19.799 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1217 0.13274 NaN 1 0 Median NaN NaN NaN 0 0 Median 35726000 19410000 16316000 20990000 10940000 10050000 8667500 3553800 5113600 0 0 0 0 0 0 6068600 4916300 1152300 0 0 0 27263 2100 28713 144479;144480;144481;144482 145531;145532 145532 2 QFLLQQASGLSSPGNNDSK ELLHFQQQQALQVARQFLLQQASGLSSPGN QQASGLSSPGNNDSKQSASAVQVPVSVAMM R Q F S K Q 1 0 2 1 0 3 0 2 0 0 3 1 0 1 1 4 0 0 0 0 0 0 19 0 1989.9756 B7ZBM3;Q8IVH2;A2A312 B7ZBM3 75 93 FOXP4 Forkhead box protein P4 yes no 2 2.2381E-08 84.289 By MS/MS 1 0.79452 0.84174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79452 0.84174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4719600 2391600 2327900 0 0 0 0 0 0 4719600 2391600 2327900 0 0 0 0 0 0 0 0 0 27264 640 28714 144483 145533 145533 1 QFLPFLQR IHRVADISGDTQKAKQFLPFLQRAGRSEAV GDTQKAKQFLPFLQRAGRSEAVVEYVFSGS K Q F Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 8 0 1047.5866 Q7KZF4;H7C597 Q7KZF4 516 523 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.0094539 60.788 By MS/MS By matching By MS/MS 1 1 1 1.066 1.0948 10.957 3 Plateau 0.94716 0.91926 NaN 1 1 Median 1.1561 0.98403 NaN 1 0 Median 1.066 1.1391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11546000 5460600 6085000 3460500 1656900 1803700 3471700 1592000 1879800 4613400 2211800 2401600 0 0 0 0 0 0 0 0 0 27265 3214 28715 144484;144485;144486 145534;145535 145535 2 QFLQAAEAIDDIPFGITSNSDVFSK AVIGFFKDVESDSAKQFLQAAEAIDDIPFG DIPFGITSNSDVFSKYQLDKDGVVLFKKFD K Q F S K Y 3 0 1 3 0 2 1 1 0 3 1 1 0 3 1 3 1 0 0 1 0 0 25 0 2712.3283 P07237;H7BZ94;I3L398;I3L312;I3L3U6 P07237 171 195 P4HB Protein disulfide-isomerase yes no 3 0.0042453 23.246 By MS/MS By MS/MS 1 2 1.5285 1.3279 20.582 3 Median 1.0554 1.0212 NaN 1 0 Median 1.6244 1.4265 10.131 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3209800 1337600 1872100 1570300 704140 866170 1639400 633470 1006000 0 0 0 0 0 0 0 0 0 0 0 0 27266 1883 28716 144487;144488;144489 145536;145537 145537 2 QFLSDEQNILALR NKLTVRGKEPFHKMKQFLSDEQNILALRSI MKQFLSDEQNILALRSIQGRQRAEPAQPSS K Q F L R S 1 1 1 1 0 2 1 0 0 1 3 0 0 1 0 1 0 0 0 0 0 0 13 0 1545.8151 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 623 635 no no 2 9.2871E-05 85.256 By MS/MS By matching 2 1 0.94655 1.0063 9.9491 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92736 1.0127 0.90007 2 0 Median 0.98251 0.85271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4692000 2162200 2529800 0 0 0 0 0 0 4522900 2082500 2440400 169130 79681 89445 0 0 0 0 0 0 27267 388 28717 144490;144491;144492 145538;145539 145539 2 QFLSETEK NNQDKLGFEDGSVLKQFLSETEKMSPEDRA EDGSVLKQFLSETEKMSPEDRAKCFEKNEA K Q F E K M 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 8 0 980.48148 P09936;D6RE83;D6R956;D6R974 P09936 116 123 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0034996 92.47 By MS/MS 1 1.3715 1.2649 NaN 1 Median 1.3715 1.2649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78187000 33241000 44945000 78187000 33241000 44945000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27268 1923 28718 144493 145540 145540 1 QFLSQFEMQSR RELHGQNPVVTPCNKQFLSQFEMQSRKTTQ PCNKQFLSQFEMQSRKTTQSGQMSGEGKAG K Q F S R K 0 1 0 0 0 3 1 0 0 0 1 0 1 2 0 2 0 0 0 0 0 0 11 0 1399.6554 F8WJN3;Q16630 F8WJN3 162 172 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2 3.9866E-30 208.03 By MS/MS By MS/MS 3 1 1.08 1.0886 1.3136 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0781 1.0857 0.37158 2 1 Median 1.3202 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79964000 39301000 40664000 0 0 0 0 0 0 79338000 39031000 40308000 626240 270100 356140 0 0 0 0 0 0 27269 1099 28719;28720 144494;144495;144496;144497 145541;145542;145543;145544;145545;145546 145542 372 6 QFLTQLMQK DVVKLTAQFVARNGRQFLTQLMQKEQRNYQ VARNGRQFLTQLMQKEQRNYQFDFLRPQHS R Q F Q K E 0 0 0 0 0 3 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 9 0 1135.606 Q15459 Q15459 180 188 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.025538 37.558 By MS/MS By MS/MS 1 1 1.2013 1.2693 4.7165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2027 1.3123 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1998 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median 20435000 9276900 11158000 0 0 0 0 0 0 11015000 5105900 5909300 0 0 0 9419800 4171000 5248700 0 0 0 27270 2954 28721 144498;144499 145547;145548;145549;145550 145549 4 QFMIFTQSSEK ______________________________ DKVRQFMIFTQSSEKTAVSCLSQNDWKLDV R Q F E K T 0 0 0 0 0 2 1 0 0 1 0 1 1 2 0 2 1 0 0 0 0 0 11 0 1344.6384 Q96GG9;F8WC32 Q96GG9 14 24 DCUN1D1 DCN1-like protein 1 yes no 2 0.00013886 85.29 By MS/MS 1 1.0393 0.97696 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0393 0.97696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7564000 3424400 4139600 0 0 0 0 0 0 7564000 3424400 4139600 0 0 0 0 0 0 0 0 0 27271 3657 28722 144500 145551;145552 145552 2 QFPNASLIGLTATATNHVLTDAQK HDFRPDYKALGILKRQFPNASLIGLTATAT LTATATNHVLTDAQKILCIEKCFTFTASFN R Q F Q K I 4 0 2 1 0 2 0 1 1 1 3 1 0 1 1 1 4 0 0 1 0 0 24 0 2510.3129 P46063 P46063 244 267 RECQL ATP-dependent DNA helicase Q1 yes yes 3 0.043265 9.9828 By MS/MS By matching 1 1 0.82243 0.78969 11.937 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80865 0.85924 NaN 1 0 Median 0.83644 0.72577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2812600 1444200 1368400 0 0 0 0 0 0 2651300 1355300 1296100 161250 88918 72332 0 0 0 0 0 0 27272 2337 28723 144501;144502 145553 145553 1 QFQDAGHFDAENIKK AAHQDRIDGITIQARQFQDAGHFDAENIKK QFQDAGHFDAENIKKKQEALVARYEALKEP R Q F K K K 2 0 1 2 0 2 1 1 1 1 0 2 0 2 0 0 0 0 0 0 0 0 15 1 1746.8325 A0A0D9SF54;Q13813 Q13813 743 757 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 0.002166 31.596 By matching By MS/MS By MS/MS By MS/MS 3 4 4 4 1.1627 1.1882 23.922 15 Median 1.388 1.3865 23.451 3 0 Median 1.3363 1.2907 16.015 4 1 Median 0.92866 1.0774 25.786 4 0 Median 1.0869 1.0607 26.766 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103020000 49088000 53928000 12054000 5033300 7021200 34959000 15406000 19553000 49294000 25292000 24002000 6708600 3356500 3352100 0 0 0 0 0 0 27273 264;2838 28724 144503;144504;144505;144506;144507;144508;144509;144510;144511;144512;144513;144514;144515;144516;144517 145554;145555;145556;145557;145558;145559;145560;145561;145562 145554 8 QFSANDKVYTVEK KDLEALMFDRSFVGKQFSANDKVYTVEKAD GKQFSANDKVYTVEKADNFEYSDPVDGSIS K Q F E K A 1 0 1 1 0 1 1 0 0 0 0 2 0 1 0 1 1 0 1 2 0 0 13 1 1527.7569 P36871;A0A3B3ITK7 P36871 458 470 PGM1 Phosphoglucomutase-1 yes no 3 0.0058206 31.881 By MS/MS 1 1.0243 0.96658 NaN 1 Median 1.0243 0.96658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5510600 2427300 3083400 5510600 2427300 3083400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27274 2262 28725 144518 145563 145563 1 QFSQYIK YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA K Q F I K N 0 0 0 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 7 0 912.47052 A0A2R8Y6J3;P46777 A0A2R8Y6J3 172 178 RPL5 60S ribosomal protein L5 yes no 2 0.0054115 97.071 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.3104 1.1799 11.896 7 Median 1.2563 1.1985 8.3148 2 0 Median 1.3104 1.1015 6.0688 3 1 Median 1.5744 1.5053 NaN 1 0 Median 1.4166 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98031000 42952000 55079000 62162000 26870000 35292000 28029000 12696000 15334000 3044700 1304100 1740600 4794100 2081600 2712600 0 0 0 0 0 0 27275 375 28726 144519;144520;144521;144522;144523;144524;144525 145564;145565;145566;145567;145568;145569;145570 145564 7 QFSSSYLSR ______________________________ ______________________________ R Q F S R S 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 4 0 0 1 0 0 0 9 0 1073.5142 P35527;CON__P35527 P35527 5 13 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0016494 89.698 By MS/MS By MS/MS By MS/MS 1 1 1 0.13675 0.14901 74.095 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.14108 0.14901 NaN 1 1 Median 0.043664 0.034722 NaN 1 1 Median 0.086693 0.091075 NaN 1 1 Median NaN NaN NaN 0 0 Median 13381000 12431000 949440 0 0 0 0 0 0 9665300 8974200 691130 432490 409210 23282 3282700 3047700 235030 0 0 0 + 27276 2242 28727 144526;144527;144528 145571;145572;145573 145571 3 QFSYLIENMAR MAYRKGIILFISRNRQFSYLIENMARDCGE SRNRQFSYLIENMARDCGEYAHTRYFRGGM R Q F A R D 1 1 1 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 11 0 1370.6653 Q9Y399 Q9Y399 150 160 MRPS2 28S ribosomal protein S2, mitochondrial no no 2 0.00088993 85.731 By MS/MS 2 1.4885 1.4207 47.702 2 Median 1.4885 1.4207 47.702 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15486000 5207000 10279000 15486000 5207000 10279000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27277 4409 28728 144529;144530 145574;145575 145575 2 QFTSSSSIK ______________________________ MTTSIRQFTSSSSIKGSSGLGGGSSRTSCR R Q F I K G 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 4 1 0 0 0 0 0 9 0 983.49238 CON__Q04695;Q04695 CON__Q04695 7 15 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.037399 34.387 By matching By MS/MS By matching 1 1 1 0.92216 0.80074 44.136 3 Median NaN NaN NaN 0 0 Median 0.92216 0.80074 NaN 1 0 Median 1.4789 1.5173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76902 0.65059 NaN 1 0 Median 3754500 1986600 1767900 0 0 0 1380200 832440 547800 1260700 522860 737850 0 0 0 0 0 0 1113500 631300 482230 + 27278 768 28729 144531;144532;144533 145576 145576 1 QFVTPADVVSGNPK RAESMLQQADKLGCRQFVTPADVVSGNPKL RQFVTPADVVSGNPKLNLAFVANLFNKYPA R Q F P K L 1 0 1 1 0 1 0 1 0 0 0 1 0 1 2 1 1 0 0 3 0 0 14 0 1457.7514 P13797;A0A0A0MSQ0;H7C4N2;Q14651 P13797 351 364 PLS3;PLS1 Plastin-3;Plastin-1 no no 2 8.4409E-08 99.522 By MS/MS By MS/MS By matching 2 2 1 0.74376 0.68772 53.302 5 Median 0.66528 0.61877 14.942 2 0 Median NaN NaN NaN 0 0 Median 0.41918 0.43563 92.652 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95626 0.77999 NaN 1 0 Median 109330000 58990000 50336000 76304000 41408000 34896000 0 0 0 28497000 15337000 13160000 0 0 0 0 0 0 4525300 2245300 2280000 27279 1995;2884 28730 144534;144535;144536;144537;144538 145577;145578;145579;145580;145581;145582;145583;145584;145585 145585 9 QFVVFEGNHYFYSPYPTK HVLHPYPTQITQSEKQFVVFEGNHYFYSPY VFEGNHYFYSPYPTKTQTMRVKLASRNVES K Q F T K T 0 0 1 0 0 1 1 1 1 0 0 1 0 3 2 1 1 0 3 2 0 0 18 0 2222.0473 P04843 P04843 152 169 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 3 0.00050646 34.721 By matching By MS/MS 1 1 0.82279 0.82422 18.741 2 Median 0.75619 0.72192 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89526 0.94102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11162000 5609600 5552600 5803600 3086000 2717600 0 0 0 5358500 2523600 2835000 0 0 0 0 0 0 0 0 0 27280 1853 28731 144539;144540 145586 145586 1 QFYDQALQQAVVDDDANNAK IWGFVNKDQIAKDVKQFYDQALQQAVVDDD ALQQAVVDDDANNAKAVVKTFHETLDCCGS K Q F A K A 4 0 2 4 0 4 0 0 0 0 1 1 0 1 0 0 0 0 1 2 0 0 20 0 2252.0346 E9PJK1;E9PRJ8;H0YDL9;H0YDJ9;E9PIF1;A6NMH8;P60033;E9PM31;H0YEE2 E9PJK1 54 73 CD81 Tetraspanin;CD81 antigen yes no 2;3 5.5894E-09 78.021 By MS/MS By matching 2 1 0.95485 0.89171 1.8237 3 Median 0.93821 0.88715 2.545 2 0 Median 1.0169 0.89171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9447000 4479200 4967800 9051400 4263300 4788100 395610 215890 179720 0 0 0 0 0 0 0 0 0 0 0 0 27281 527 28732 144541;144542;144543 145587;145588;145589 145587 3 QFYINVER RILVKKEELTLEGIRQFYINVEREEWKLDT LTLEGIRQFYINVEREEWKLDTLCDLYETL R Q F E R E 0 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 8 0 1067.54 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3KTN0;Q14240;E7EQG2 P60842 248 255 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.0023926 109.01 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1.1619 1.1025 20.85 8 Median 1.1376 1.1025 6.4449 2 0 Median 1.0886 0.93145 3.5048 2 0 Median 1.4199 1.461 19.305 2 1 Median 1.6158 1.3934 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.169 1.006 NaN 1 0 Median 150690000 65154000 85539000 50696000 23171000 27524000 42527000 20097000 22429000 47292000 17926000 29366000 8227900 3098500 5129400 0 0 0 1950500 860150 1090400 27282 2529;2867 28733 144544;144545;144546;144547;144548;144549;144550;144551;144552 145590;145591;145592;145593;145594;145595;145596;145597;145598;145599;145600;145601 145594 12 QGAAIGIPYFTAYR ADHTVYKLPEKLDFKQGAAIGIPYFTAYRA KQGAAIGIPYFTAYRALIHSACVKAGESVL K Q G Y R A 3 1 0 0 0 1 0 2 0 2 0 0 0 1 1 0 1 0 2 0 0 0 14 0 1526.7882 Q08257;A6NP24;C9JH92 Q08257 125 138 CRYZ Quinone oxidoreductase yes no 2 0.030381 26.118 By MS/MS 1 1.1192 1.0592 NaN 1 Median 1.1192 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4996100 2271900 2724200 4996100 2271900 2724200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27283 2737 28734 144553 145602 145602 1 QGAFLVNAAR HNHHLINDFTIKQMRQGAFLVNAARGGLVD IKQMRQGAFLVNAARGGLVDEKALAQALKE R Q G A R G 3 1 1 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1045.5669 P56545 P56545 263 272 CTBP2 C-terminal-binding protein 2 yes yes 2 0.00071616 105.14 By matching By matching By MS/MS 1 1 2 0.86811 0.85797 68.212 4 Median 0.80726 0.80429 NaN 1 0 Median 2.7596 2.3781 NaN 1 0 Median 0.6417 0.64912 48.586 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24304000 11783000 12522000 2021000 1073000 947990 2189600 447190 1742400 20094000 10263000 9831300 0 0 0 0 0 0 0 0 0 27284 2514 28735 144554;144555;144556;144557 145603 145603 1 QGAFLVNTAR HNHHLINDFTVKQMRQGAFLVNTARGGLVD VKQMRQGAFLVNTARGGLVDEKALAQALKE R Q G A R G 2 1 1 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1075.5774 Q13363;H0Y8W7;H0Y9M9 Q13363 257 266 CTBP1 C-terminal-binding protein 1 yes no 2 0.011484 61.56 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27285 2808 28736 144558 145604 145604 1 QGAIVAVTGDGVNDSPALK TSPQQKLIIVEGCQRQGAIVAVTGDGVNDS VAVTGDGVNDSPALKKADIGVAMGIAGSDV R Q G L K K 3 0 1 2 0 1 0 3 0 1 1 1 0 0 1 1 1 0 0 3 0 0 19 0 1810.9425 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1 P05023 708 726 ATP1A1;ATP1A3;ATP1A2 Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2 yes no 2 5.2829E-21 126.95 By MS/MS By MS/MS 3 3 0.8833 0.8136 11.949 6 Median 0.8235 0.79966 15.35 3 1 Median 0.96897 0.85224 3.8203 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42953000 22778000 20175000 28014000 14839000 13175000 14939000 7938600 7000600 0 0 0 0 0 0 0 0 0 0 0 0 27286 1857 28737 144559;144560;144561;144562;144563;144564 145605;145606;145607;145608;145609;145610;145611;145612;145613 145607 9 QGALAPWPIVGLGK YHVWWGIIESFLKERQGALAPWPIVGLGKF RQGALAPWPIVGLGKFLLKVDSKLWHWLNK R Q G G K F 2 0 0 0 0 1 0 3 0 1 2 1 0 0 2 0 0 1 0 1 0 0 14 0 1405.8082 Q9H330;F8WBJ7;H7C0G1 Q9H330 419 432 TMEM245 Transmembrane protein 245 yes no 2 0.011444 33.225 By MS/MS By matching 1 1 0.86408 0.81159 5.445 2 Median 0.78863 0.78093 NaN 1 0 Median 0.94675 0.84344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1865600 1021300 844230 1486600 837690 648880 378990 183650 195340 0 0 0 0 0 0 0 0 0 0 0 0 27287 3951 28738 144565;144566 145614 145614 1 QGANINEIR ELTIPNNLIGCIIGRQGANINEIRQMSGAQ GCIIGRQGANINEIRQMSGAQIKIANPVEG R Q G I R Q 1 1 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1013.5254 Q15365 Q15365 298 306 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.0047602 75.043 By MS/MS By matching 3 1 2.3539 2.4114 34.992 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2531 2.3555 39.729 3 1 Plateau 1.7014 1.3579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21999000 7415500 14583000 0 0 0 0 0 0 21753000 7309800 14444000 245250 105640 139610 0 0 0 0 0 0 27288 2941 28739 144567;144568;144569;144570 145615;145616 145615 2 QGAPGQGGGGGLSHEDTLALLEGLVSR NWQKEAMRLERLELRQGAPGQGGGGGLSHE SHEDTLALLEGLVSRREAALKEDFRRETAA R Q G S R R 2 1 0 1 0 2 2 8 1 0 5 0 0 0 1 2 1 0 0 1 0 0 27 0 2575.299 Q9UH99 Q9UH99 312 338 SUN2 SUN domain-containing protein 2 yes yes 3 0.0012938 32.708 By MS/MS By MS/MS 1 2 0.75716 0.77422 81.85 3 Median 0.90489 0.90067 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38107 0.39697 94.468 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14497000 9454400 5042900 899330 520320 379010 0 0 0 13598000 8934100 4663900 0 0 0 0 0 0 0 0 0 27289 4271 28740 144571;144572;144573 145617;145618 145618 2 QGAPTSFLPPEASQLKPDR EQQQAYRPEMKTEMKQGAPTSFLPPEASQL TSFLPPEASQLKPDRQQFQSRKRPYEENRG K Q G D R Q 2 1 0 1 0 2 1 1 0 0 2 1 0 1 4 2 1 0 0 0 0 0 19 1 2038.0484 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0QYZ0;M0QZV6;M0R0K8;M0QYI8;M0R203 Q9BUJ2 147 165 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 1.097E-06 52.814 By matching By MS/MS 1 1 0.2744 0.30641 33.136 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21379 0.24241 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.3522 0.38732 NaN 1 0 Median NaN NaN NaN 0 0 Median 15723000 12091000 3631400 0 0 0 0 0 0 9408000 7909300 1498800 0 0 0 6314500 4181800 2132600 0 0 0 27290 3840 28741 144574;144575 145619;145620 145619 2 QGDFESDHSGYVRPVPVPR QLNNWAVYRLSKFTRQGDFESDHSGYVRPV ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ R Q G P R S 0 2 0 2 0 1 1 2 1 0 0 0 0 1 3 2 0 0 1 3 0 0 19 1 2141.029 A6NHR9 A6NHR9 208 226 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 5.1092E-10 89.982 By matching By MS/MS 1 1 0.70824 0.73309 15.767 2 Median NaN NaN NaN 0 0 Median 0.77316 0.65575 NaN 1 0 Median 0.64877 0.81956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28869000 18322000 10547000 0 0 0 9015000 4943100 4071900 19854000 13379000 6475200 0 0 0 0 0 0 0 0 0 27291 518 28742 144576;144577 145621;145622 145621 2 QGDTILVSGMK YIPPSYISEMEKAAKQGDTILVSGMKTGSS KAAKQGDTILVSGMKTGSSKLKARIQEAVY K Q G M K T 0 0 0 1 0 1 0 2 0 1 1 1 1 0 0 1 1 0 0 1 0 0 11 0 1147.5907 Q8TEM1 Q8TEM1 202 212 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.013692 37.344 By MS/MS 1 1.1927 1.2804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1927 1.2804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6488900 3081900 3407100 0 0 0 0 0 0 6488900 3081900 3407100 0 0 0 0 0 0 0 0 0 27292 3477 28743 144578 145623 145623 1 QGEAEFNR KACLISLGYDVENDRQGEAEFNRIMSLVDP YDVENDRQGEAEFNRIMSLVDPNHSGLVTF R Q G N R I 1 1 1 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 8 0 949.42536 O43707;F5GXS2 O43707 806 813 ACTN4 Alpha-actinin-4 yes no 2 0.023122 44.395 By MS/MS 2 0.94757 0.82006 17.823 2 Median NaN NaN NaN 0 0 Median 0.94757 0.82006 17.823 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5092900 2401200 2691700 0 0 0 5092900 2401200 2691700 0 0 0 0 0 0 0 0 0 0 0 0 27293 1585 28744 144579;144580 145624 145624 1 QGEEEDAEIIVK GKFGAVNRVIIYQEKQGEEEDAEIIVKIFV QEKQGEEEDAEIIVKIFVEFSIASETHKAI K Q G V K I 1 0 0 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1358.6565 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 478 489 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 5.4737E-06 98.943 By matching By MS/MS By MS/MS 1 1 2 1.0224 0.88225 2.0684 3 Median NaN NaN NaN 0 0 Median 1.0224 0.88225 NaN 1 0 Median 0.93771 0.90824 NaN 1 0 Median 1.0242 0.87259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25205000 11977000 13229000 0 0 0 1290900 638050 652860 20988000 9942200 11046000 2926100 1396400 1529700 0 0 0 0 0 0 27294 284 28745 144581;144582;144583;144584 145625;145626;145627 145626 3 QGEVIVSIEEKPK TDVQEECREKGGQEKQGEVIVSIEEKPKEV EKQGEVIVSIEEKPKEVSEEQPVVTLEKQG K Q G P K E 0 0 0 0 0 1 3 1 0 2 0 2 0 0 1 1 0 0 0 2 0 0 13 1 1454.7981 P49321;E9PPR5 P49321 263 275 NASP Nuclear autoantigenic sperm protein yes no 2;3 0.00070396 91.937 By MS/MS By MS/MS 2 2 1.034 1.0209 34.906 4 Median 0.81545 0.85729 7.35 2 0 Median 1.5474 1.435 30.784 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32555000 15303000 17253000 12008000 6628300 5379300 20548000 8674200 11874000 0 0 0 0 0 0 0 0 0 0 0 0 27295 2376 28746 144585;144586;144587;144588 145628;145629;145630;145631;145632 145628 5 QGEYGLASICNGGGGASAMLIQKL MSGARIVGHLTHALKQGEYGLASICNGGGG CNGGGGASAMLIQKL_______________ K Q G K L - 3 0 1 0 1 2 1 6 0 2 3 1 1 0 0 2 0 0 1 0 0 0 24 1 2394.1672 P24752 P24752 404 427 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 3 0.072861 2.4736 By matching By MS/MS 1 2 1.0677 0.91527 15.808 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69061 0.69605 NaN 1 0 Median 1.0677 0.91527 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6946100 3699900 3246200 0 0 0 0 0 0 4569100 2660100 1909000 2377000 1039800 1337200 0 0 0 0 0 0 27296 2126 28747 144589;144590;144591 145633 145633 1 QGFGELLQAVPLADSFR PKGNKKNAGFTPQERQGFGELLQAVPLADS FGELLQAVPLADSFRHLYPNTPYA______ R Q G F R H 2 1 0 1 0 2 1 2 0 0 3 0 0 2 1 1 0 0 0 1 0 0 17 0 1846.9577 G3V3M6;P27695;G3V5Q1 G3V3M6 238 254 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2 0.00052627 41.54 By MS/MS By matching By MS/MS 1 1 2 0.97011 0.97144 9.9494 4 Median 0.90342 0.91266 NaN 1 0 Median 1.2022 1.034 NaN 1 0 Median 0.97011 0.99109 14.664 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6980200 3551000 3429200 1842900 955470 887390 51509 23402 28107 5085900 2572200 2513700 0 0 0 0 0 0 0 0 0 27297 1112 28748 144592;144593;144594;144595 145634;145635;145636;145637;145638 145634 5 QGFVPAAYVK NSTNKDWWKVEVNDRQGFVPAAYVKKLDPA EVNDRQGFVPAAYVKKLDPAQSASRENLLE R Q G V K K 2 0 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 1 2 0 0 10 0 1078.5811 A0A0D9SF54;Q13813 Q13813 1013 1022 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.0064357 57.047 By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1045 1.139 23.056 5 Median 1.3859 1.3352 NaN 1 0 Median 1.093 0.96675 NaN 1 0 Median 0.81837 0.90031 NaN 1 1 Median 1.7391 1.579 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1045 1.139 NaN 1 0 Median 49163000 23614000 25549000 6762800 2652900 4109900 10957000 4669400 6287200 29418000 15387000 14032000 1546400 699440 846910 0 0 0 479520 205860 273660 27298 264;2838 28749 144596;144597;144598;144599;144600;144601 145639;145640;145641;145642 145641 4 QGGDLGWMTR RFNEVAAQYSEDKARQGGDLGWMTRGSMVG EDKARQGGDLGWMTRGSMVGPFQEAAFALP R Q G T R G 0 1 0 1 0 1 0 3 0 0 1 0 1 0 0 0 1 1 0 0 0 0 10 0 1119.5131 Q9Y237 Q9Y237 78 87 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 2 0.0007841 71.349 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.2629 1.0789 6.4266 7 Median 1.0363 1.004 NaN 1 0 Median 1.2805 1.0757 0.42264 2 0 Median 1.1816 1.1964 0.66205 2 0 Median 1.366 1.0742 1.344 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63710000 29092000 34617000 12754000 6116800 6637000 9142200 4065700 5076500 34033000 15605000 18428000 7781000 3305200 4475800 0 0 0 0 0 0 27299 4370 28750;28751 144602;144603;144604;144605;144606;144607;144608 145643;145644;145645;145646;145647;145648 145645 1952 6 QGGDVLQNEEGETTSHLMGMFYR IDASMSIYQFLIAVRQGGDVLQNEEGETTS EEGETTSHLMGMFYRTIRMMENGIKPVYVF R Q G Y R T 0 1 1 1 0 2 3 4 1 0 2 0 2 1 0 1 2 0 1 1 0 0 23 0 2598.1479 P39748;F5H1Y3 P39748 48 70 FEN1 Flap endonuclease 1 yes no 3 5.1924E-13 62.274 By MS/MS By MS/MS By matching 1 2 2 1.1209 1.044 13.316 5 Median NaN NaN NaN 0 0 Median 1.0098 0.87529 NaN 1 0 Median 1.0298 1.0623 20.088 2 0 Median 1.2405 1.0622 2.4322 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58642000 28024000 30618000 0 0 0 3996500 1874600 2121900 52558000 25303000 27255000 2087000 845850 1241200 0 0 0 0 0 0 27300 2283 28752 144609;144610;144611;144612;144613 145649;145650;145651;145652 145652 4 QGGGGGGGSVPGIER EILSNALKRGEIIAKQGGGGGGGSVPGIER QGGGGGGGSVPGIERMGPGIDRLGGAGMER K Q G E R M 0 1 0 0 0 1 1 8 0 1 0 0 0 0 1 1 0 0 0 1 0 0 15 0 1283.6218 A0A087X0X3;P52272;M0R019;M0R2T0 A0A087X0X3 389 403 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 3.3135E-07 91.914 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1 1.0907 1.0188 36.801 7 Median 1.2955 1.2866 NaN 1 0 Median 1.0907 0.94558 6.8011 3 0 Median 1.0056 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99904 1.0188 NaN 1 1 Median 2.98 2.5614 NaN 1 1 Median 34357000 14234000 20123000 1225300 389890 835360 5393800 2637300 2756600 12164000 5417500 6746000 0 0 0 10406000 4629600 5776800 5168300 1160200 4008100 27301 116 28753 144614;144615;144616;144617;144618;144619;144620 145653;145654;145655;145656;145657;145658;145659 145655 7 QGGLGPIRIPLLSDLTHQISK DSQFTHLAWINTPRRQGGLGPIRIPLLSDL IRIPLLSDLTHQISKDYGVYLEDSGHTLRG R Q G S K D 0 1 0 1 0 2 0 3 1 3 4 1 0 0 2 2 1 0 0 0 0 0 21 1 2242.2798 Q13162;H7C3T4;A6NJJ0 Q13162 166 186 PRDX4 Peroxiredoxin-4 yes no 3 0.014617 18.772 By MS/MS By matching 1 1 1.0115 1.0059 4.9294 2 Median 0.93034 0.97141 NaN 1 0 Median 1.0998 1.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14373000 7272100 7101200 13997000 7096600 6900700 375950 175500 200450 0 0 0 0 0 0 0 0 0 0 0 0 27302 2793 28754 144621;144622 145660 145660 1 QGGLGPMNIPLVSDPK DSHFCHLAWVNTPKKQGGLGPMNIPLVSDP GGLGPMNIPLVSDPKRTIAQDYGVLKADEG K Q G P K R 0 0 1 1 0 1 0 3 0 1 2 1 1 0 3 1 0 0 0 1 0 0 16 0 1621.8498 Q06830;A0A0A0MSI0 Q06830 94 109 PRDX1 Peroxiredoxin-1 yes no 2 7.3059E-05 76.326 By MS/MS By matching By MS/MS 1 1 1 0.80669 0.74368 6.7298 3 Plateau 0.80669 0.74368 NaN 1 0 Median 0.78966 0.6703 NaN 1 0 Median 0.79933 0.76035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93125000 49500000 43625000 87676000 46544000 41132000 1881800 1011000 870730 3567300 1944800 1622500 0 0 0 0 0 0 0 0 0 27303 2728 28755 144623;144624;144625 145661;145662;145663;145664;145665 145663 5 QGGLGPMNIPLVSDPKR DSHFCHLAWVNTPKKQGGLGPMNIPLVSDP GLGPMNIPLVSDPKRTIAQDYGVLKADEGI K Q G K R T 0 1 1 1 0 1 0 3 0 1 2 1 1 0 3 1 0 0 0 1 0 0 17 1 1777.9509 Q06830;A0A0A0MSI0 Q06830 94 110 PRDX1 Peroxiredoxin-1 yes no 2;3 2.5657E-14 161.48 By MS/MS By MS/MS By matching By matching 5 4 2 1 0.79905 0.76547 26.289 12 Median 0.80332 0.82555 5.7431 5 1 Median 0.84148 0.76115 12.7 4 0 Median 0.45307 0.48918 49.584 2 0 Median 0.59289 0.52483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 416460000 228260000 188200000 402830000 219820000 183020000 8065400 4588200 3477200 5222500 3629500 1593000 335180 222280 112900 0 0 0 0 0 0 27304 2728 28756;28757 144626;144627;144628;144629;144630;144631;144632;144633;144634;144635;144636;144637 145666;145667;145668;145669;145670;145671;145672;145673;145674;145675 145670 1411 10 QGGPTYYIDTNALR DDGSTLMEIDGDKGKQGGPTYYIDTNALRV KQGGPTYYIDTNALRVPRENMEAISPLKNG K Q G L R V 1 1 1 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 2 0 0 0 14 0 1567.7631 O96019;H7C5S0;C9JQT2 O96019 63 76 ACTL6A Actin-like protein 6A yes no 2 1.4713E-06 97.214 By MS/MS By MS/MS By matching By matching 2 1 2 1 0.85866 0.81856 10.98 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81105 0.83207 5.8731 2 0 Median 1.1356 0.98408 NaN 1 0 Median 0.77277 0.76281 11.421 2 0 Median 0.97297 0.81023 NaN 1 0 Median 69713000 36888000 32825000 0 0 0 0 0 0 59596000 32032000 27564000 5126100 2357300 2768900 4903800 2464000 2439800 86978 34943 52035 27305 1809 28758 144638;144639;144640;144641;144642;144643 145676;145677;145678;145679;145680;145681 145676 6 QGGSQPSSFSPGQSQVTPQDQEK QGGGIQGGGIQGASKQGGSQPSSFSPGQSQ FSPGQSQVTPQDQEKAALIMQVLQLTADQI K Q G E K A 0 0 0 1 0 6 1 3 0 0 0 1 0 1 3 5 1 0 0 1 0 0 23 0 2403.0939 Q9H0L4 Q9H0L4 554 576 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 3 8.0552E-08 45.011 By MS/MS 1 0.40916 0.42974 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40916 0.42974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5427600 2984000 2443500 0 0 0 0 0 0 5427600 2984000 2443500 0 0 0 0 0 0 0 0 0 27306 3927 28759 144644 145682 145682 1 QGGYSQSNYNSPGSGQNYSGPPSSYQSSQGGYGR GYGGGSGGGSSYQGKQGGYSQSNYNSPGSG GPPSSYQSSQGGYGRNADHSMNYQYR____ K Q G G R N 0 1 3 0 0 5 0 8 0 0 0 0 0 0 3 9 0 0 5 0 0 0 34 0 3502.4682 Q12906;K7ELV3 Q12906 850 883 ILF3 Interleukin enhancer-binding factor 3 yes no 3 0.0010064 25.859 By MS/MS By matching 1 1 0.5974 0.63131 26.23 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71011 0.75997 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50258 0.52444 NaN 1 0 Median NaN NaN NaN 0 0 Median 9345500 5524300 3821200 0 0 0 0 0 0 4156000 2482200 1673800 0 0 0 5189500 3042100 2147400 0 0 0 27307 2769 28760 144645;144646 145683 145683 1 QGIETPEDQNDLR ENVKKAVEQIRNILKQGIETPEDQNDLRKM LKQGIETPEDQNDLRKMQLRELARLNGTLR K Q G L R K 0 1 1 2 0 2 2 1 0 1 1 0 0 0 1 0 1 0 0 0 0 0 13 0 1513.7009 Q15637 Q15637 228 240 SF1 Splicing factor 1 yes yes 2 0.00013547 143.96 By MS/MS 1 0.81173 0.82701 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81173 0.82701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10917000 6276600 4640500 0 0 0 0 0 0 10917000 6276600 4640500 0 0 0 0 0 0 0 0 0 27308 2959 28761 144647 145684;145685 145685 2 QGIETPEDQNDLRK ENVKKAVEQIRNILKQGIETPEDQNDLRKM KQGIETPEDQNDLRKMQLRELARLNGTLRE K Q G R K M 0 1 1 2 0 2 2 1 0 1 1 1 0 0 1 0 1 0 0 0 0 0 14 1 1641.7958 Q15637 Q15637 228 241 SF1 Splicing factor 1 yes yes 2;3 0.0023939 47.037 By MS/MS 4 0.78932 0.83902 14.641 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78932 0.83902 14.641 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61327000 34253000 27074000 0 0 0 0 0 0 61327000 34253000 27074000 0 0 0 0 0 0 0 0 0 27309 2959 28762 144648;144649;144650;144651 145686;145687;145688;145689;145690 145690 5 QGILGAQPQLIFQPHR SPAPPLLHVAALGQKQGILGAQPQLIFQPH GILGAQPQLIFQPHRIPPLFPQKPLSLFQT K Q G H R I 1 1 0 0 0 4 0 2 1 2 2 0 0 1 2 0 0 0 0 0 0 0 16 0 1801.9951 Q8N163;E5RFJ3;H0YC69;H0YC58 Q8N163 139 154 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2;3 3.6738E-05 56.648 By MS/MS By matching By MS/MS By matching 1 1 3 1 0.73717 0.79218 7.5257 5 Median 0.73717 0.73278 NaN 1 1 Median 0.9483 0.87034 NaN 1 0 Median 0.69635 0.75691 6.4405 2 0 Median NaN NaN NaN 0 0 Median 0.75062 0.80297 NaN 1 0 Median NaN NaN NaN 0 0 Median 11762000 6727700 5033900 1734500 923520 810990 900530 484470 416060 8646700 5052600 3594100 0 0 0 479850 267120 212730 0 0 0 27310 3354 28763 144652;144653;144654;144655;144656;144657 145691;145692;145693;145694;145695 145694 5 QGIVPPGLTENELWR NEQLESARKIVHDYRQGIVPPGLTENELWR QGIVPPGLTENELWRAKYIYDSAFHPDTGE R Q G W R A 0 1 1 0 0 1 2 2 0 1 2 0 0 0 2 0 1 1 0 1 0 0 15 0 1707.8944 Q9H9B4;D6RFI0;D6RDG7;S4R2X2 Q9H9B4 56 70 SFXN1 Sideroflexin-1 yes no 2 0.00026934 69.979 By MS/MS By matching 1 1 0.94151 0.83 27.929 2 Median 0.72988 0.68126 NaN 1 0 Median 1.2145 1.0112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13347000 7159800 6187300 7502700 4466300 3036400 5844500 2693500 3150900 0 0 0 0 0 0 0 0 0 0 0 0 27311 3998 28764 144658;144659 145696;145697 145696 2 QGIVTPIEAQTR QAMGWKEGSGLGRKKQGIVTPIEAQTRVRG RKKQGIVTPIEAQTRVRGSGLGARGSSYGV K Q G T R V 1 1 0 0 0 2 1 1 0 2 0 0 0 0 1 0 2 0 0 1 0 0 12 0 1311.7147 P98175 P98175 882 893 RBM10 RNA-binding protein 10 yes yes 2 0.0002496 84.17 By MS/MS By matching 1 1 1.0478 1.1301 7.8481 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97201 1.0691 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1295 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median 9017100 3928900 5088200 0 0 0 0 0 0 5893900 2923900 2970000 0 0 0 3123100 1005000 2118200 0 0 0 27312 2671 28765 144660;144661 145698;145699 145698 2 QGLEQFINK GDDGIFDDNFIEERKQGLEQFINKVAGHPL FIEERKQGLEQFINKVAGHPLAQNERCLHM K Q G N K V 0 0 1 0 0 2 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 0 1075.5662 O60493;A0A087X0R6;Q9UMY4 O60493 120 128 SNX3;SNX12 Sorting nexin-3;Sorting nexin-12 no no 2 0.0065554 54.205 By MS/MS 1 1.2652 1.1961 NaN 1 Median 1.2652 1.1961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4511900 2053300 2458600 4511900 2053300 2458600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27313 1616;112 28766 144662 145700 145700 1 QGLLPLTFADPADYNK ITKSFARIHETNLKKQGLLPLTFADPADYN GLLPLTFADPADYNKIHPVDKLTIQGLKDF K Q G N K I 2 0 1 2 0 1 0 1 0 0 3 1 0 1 2 0 1 0 1 0 0 0 16 0 1761.8938 A2A274;Q99798 A2A274 727 742 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.00028884 48.741 By MS/MS By matching 1 1 0.87768 0.81205 25.889 2 Median 0.69277 0.6762 NaN 1 0 Median 1.1119 0.97518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6367600 3268800 3098800 2711200 1587900 1123400 3656300 1680900 1975400 0 0 0 0 0 0 0 0 0 0 0 0 27314 495 28767 144663;144664 145701;145702 145701 2 QGLLPVLESLK KALGEKAKPVLEDLRQGLLPVLESLKVSIL EDLRQGLLPVLESLKVSILAAIDEASKKLN R Q G L K V 0 0 0 0 0 1 1 1 0 0 4 1 0 0 1 1 0 0 0 1 0 0 11 0 1195.7176 CON__P15497 CON__P15497 238 248 yes yes 2 0.029707 49.16 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4295100 4295100 0 4295100 4295100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 27315 758 28768 144665 145703 145703 1 QGNLSSQVPLK QALTEIQEFISFISKQGNLSSQVPLKRLLN FISKQGNLSSQVPLKRLLNTWTNRYPDAKM K Q G L K R 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 11 0 1169.6404 P78527 P78527 3148 3158 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0019074 71.349 By MS/MS By MS/MS By matching 2 1 1 0.89479 0.82076 19.99 4 Median NaN NaN NaN 0 0 Median 0.9368 0.82234 19.188 2 1 Median 0.58427 0.63106 NaN 1 0 Median 0.98173 0.93823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13215000 6817000 6398500 0 0 0 7710300 3800000 3910400 3999400 2204400 1795000 1505700 812660 693080 0 0 0 0 0 0 27316 2647 28769 144666;144667;144668;144669 145704;145705 145704 2 QGNLSSQVPLKR QALTEIQEFISFISKQGNLSSQVPLKRLLN ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD K Q G K R L 0 1 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 12 1 1325.7415 P78527 P78527 3148 3159 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00014139 129.38 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 1 0.79473 0.85893 38.401 9 Median 0.79238 0.81854 6.8112 2 0 Median 1.4076 1.3067 37.23 2 0 Median 1.0309 1.225 37.229 4 0 Linear 1.2972 1.2083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73443000 33429000 40015000 14686000 7694800 6991600 29737000 10136000 19601000 25901000 14204000 11696000 3119500 1393400 1726000 0 0 0 0 0 0 27317 2647 28770 144670;144671;144672;144673;144674;144675;144676;144677;144678 145706;145707;145708;145709;145710;145711;145712;145713;145714;145715;145716;145717;145718;145719 145716 14 QGNMTAALQAALK GQAGPDEGEVDSCLRQGNMTAALQAALKNP LRQGNMTAALQAALKNPPINTKSQAVKDRA R Q G L K N 4 0 1 0 0 2 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1315.6918 O15511;B1ALC0 O15511 48 60 ARPC5 Actin-related protein 2/3 complex subunit 5 yes no 2 0.0022032 48.698 By MS/MS 1 1.1074 1.0463 NaN 1 Median 1.1074 1.0463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9457100 4611400 4845600 9457100 4611400 4845600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27318 1551 28771 144679 145720 145720 1 QGNVLPLWGNEK QCGGGGATKPAVSGKQGNVLPLWGNEKTMN SGKQGNVLPLWGNEKTMNLNPMILTNILSS K Q G E K T 0 0 2 0 0 1 1 2 0 0 2 1 0 0 1 0 0 1 0 1 0 0 12 0 1353.7041 Q5VTL8 Q5VTL8 43 54 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.0036159 68.847 By MS/MS 1 0.92166 0.94097 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92166 0.94097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9534100 4793600 4740500 0 0 0 0 0 0 9534100 4793600 4740500 0 0 0 0 0 0 0 0 0 27319 3111 28772 144680 145721 145721 1 QGPEGLEVSFR DGPAPVGRFFTPAIRQGPEGLEVSFRGRCL PAIRQGPEGLEVSFRGRCLRGEEVAVPPGL R Q G F R G 0 1 0 0 0 1 2 2 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1217.6041 E9PN81;Q8TDP1 E9PN81 54 64 RNASEH2C Ribonuclease H2 subunit C yes no 2 0.018018 54.608 By MS/MS 1 1.4351 1.3563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4351 1.3563 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2329100 1066700 1262400 0 0 0 0 0 0 2329100 1066700 1262400 0 0 0 0 0 0 0 0 0 27320 972 28773 144681 145722 145722 1 QGQETAVAPSLVAPALNKPK DANYDGKDYDPVAARQGQETAVAPSLVAPA AVAPSLVAPALNKPKKPLTSSSAAPQRPIS R Q G P K K 4 0 1 0 0 2 1 1 0 0 2 2 0 0 3 1 1 0 0 2 0 0 20 1 2018.116 Q15691 Q15691 131 150 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2;3 1.7015E-09 84.436 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 0.69822 0.63799 25.45 8 Median 0.74609 0.72165 16.826 2 0 Median 0.62693 0.56911 9.0595 2 0 Median 0.60006 0.61106 31.028 2 0 Median 0.72351 0.6353 NaN 1 0 Median 1.021 1.0904 NaN 1 0 Median NaN NaN NaN 0 0 Median 181010000 104680000 76330000 105390000 62385000 43006000 12022000 6942600 5079200 43805000 25179000 18625000 11883000 6425600 5457800 7905200 3743000 4162200 0 0 0 27321 2963 28774 144682;144683;144684;144685;144686;144687;144688;144689 145723;145724;145725;145726;145727;145728;145729;145730;145731;145732;145733;145734;145735 145723 13 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK PAPMAPPRAPGPLSKQGSGSSQPMEVQEGY DDPYSSAEPHVSGVKRSRSGEGEVSGLMRK K Q G V K R 1 0 0 2 0 3 3 7 1 0 0 1 1 1 3 7 0 0 2 3 0 0 35 0 3556.5325 Q13263 Q13263 435 469 TRIM28 Transcription intermediary factor 1-beta yes yes 3 3.3451E-14 69.783 By MS/MS By matching By MS/MS By matching By matching 1 1 3 1 1 0.58419 0.59899 23.672 6 Median 0.4282 0.41877 NaN 1 0 Median 0.88686 0.80532 NaN 1 0 Median 0.55183 0.59865 18.081 3 1 Median 0.67582 0.59933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37235000 26182000 11053000 4552300 2965600 1586800 362610 186580 176030 30584000 21951000 8632700 249980 147720 102250 1485900 931010 554890 0 0 0 27322 2802 28775;28776 144690;144691;144692;144693;144694;144695;144696 145736;145737;145738;145739 145737 1502 4 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR PAPMAPPRAPGPLSKQGSGSSQPMEVQEGY DPYSSAEPHVSGVKRSRSGEGEVSGLMRKV K Q G K R S 1 1 0 2 0 3 3 7 1 0 0 1 1 1 3 7 0 0 2 3 0 0 36 1 3712.6336 Q13263 Q13263 435 470 TRIM28 Transcription intermediary factor 1-beta yes yes 4 4.6463E-16 53.231 By MS/MS By matching 2 1 0.54174 0.56457 15.286 3 Median 0.49235 0.50883 14.701 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56181 0.61784 NaN 1 0 Median NaN NaN NaN 0 0 Median 22988000 15210000 7777200 16336000 10671000 5665300 0 0 0 0 0 0 0 0 0 6651700 4539700 2111900 0 0 0 27323 2802 28777 144697;144698;144699 145740;145741 145740 2 QGSLINSLKPSGPTPASGQLSSGDK TPHPVLTPVAANQAKQGSLINSLKPSGPTP SGPTPASGQLSSGDKASGTAKIETAVTSTP K Q G D K A 1 0 1 1 0 2 0 4 0 1 3 2 0 0 3 6 1 0 0 0 0 0 25 1 2425.2449 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;A0A494C104 A0A494C1F2 1153 1177 NUP214 Nuclear pore complex protein Nup214 yes no 3 2.773E-20 86.006 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.66121 0.69304 37.828 4 Median 0.34801 0.34829 NaN 1 0 Median 0.64524 0.62831 NaN 1 0 Median 0.67759 0.78574 NaN 1 0 Median 0.81912 0.76445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24309000 14444000 9864500 3200300 2276000 924250 1221800 805190 416640 19007000 10918000 8089200 879430 444980 434450 0 0 0 0 0 0 27324 467 28778 144700;144701;144702;144703 145742;145743;145744;145745 145742 4 QGSPDQVSPVSEMTSTSLYQDKQEGK SGRGAESPFEEKSGKQGSPDQVSPVSEMTS EMTSTSLYQDKQEGKSTDFAPIKEDFGQEK K Q G G K S 0 0 0 2 0 4 2 2 0 0 1 2 1 0 2 5 2 0 1 2 0 0 26 1 2825.3025 P46821 P46821 1436 1461 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.044576 10.903 By matching By MS/MS 1 1 0.73643 0.8169 13.772 2 Median 0.68447 0.74111 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79234 0.90046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6262900 3213400 3049500 2970200 1620600 1349600 0 0 0 3292700 1592800 1699900 0 0 0 0 0 0 0 0 0 27325 2347 28779 144704;144705 145746 145746 1 QGTFHSQQALEYGTK VDKNTKIICQGFTGKQGTFHSQQALEYGTK QGTFHSQQALEYGTKLVGGTTPGKGGQTHL K Q G T K L 1 0 0 0 0 3 1 2 1 0 1 1 0 1 0 1 2 0 1 0 0 0 15 0 1693.806 P53597;A0A494C0D1 P53597 67 81 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes no 3 2.6075E-05 67.095 By MS/MS By MS/MS By matching 1 1 1 1.4903 1.345 28.124 2 Median NaN NaN NaN 0 0 Median 1.3117 1.1025 NaN 1 0 Median 1.6931 1.641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8916100 4759600 4156500 0 0 0 7439700 4100100 3339600 1476400 659510 816910 0 0 0 0 0 0 0 0 0 27326 2469 28780 144706;144707;144708 145747;145748 145747 2 QGTQYTFSSIEREEYGK GTTTTRSFDFEIETKQGTQYTFSSIEREEY TQYTFSSIEREEYGKLFDFVNAKKLNIKNR K Q G G K L 0 1 0 0 0 2 3 2 0 1 0 1 0 1 0 2 2 0 2 0 0 0 17 1 2021.933 Q08945 Q08945 397 413 SSRP1 FACT complex subunit SSRP1 yes yes 3 9.4305E-11 99.344 By MS/MS By matching 2 1 1.1752 1.2928 9.2339 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1404 1.2126 9.0543 2 0 Median 1.4882 1.3607 NaN 1 0 Median 21910000 9717200 12193000 0 0 0 0 0 0 0 0 0 0 0 0 20777000 9255800 11521000 1132900 461380 671520 27327 2743 28781 144709;144710;144711 145749;145750;145751 145749 3 QGTTPPIWHLTDK NAVLIDMERQGDVYRQGTTPPIWHLTDKKR YRQGTTPPIWHLTDKKRERMQIKRNTNSVP R Q G D K K 0 0 0 1 0 1 0 1 1 1 1 1 0 0 2 0 3 1 0 0 0 0 13 0 1492.7674 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 346 358 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 0.016574 24.191 By matching By MS/MS 1 1 0.69002 0.73455 16.635 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59364 0.65304 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80204 0.82625 NaN 1 0 Median NaN NaN NaN 0 0 Median 11947000 6894100 5052500 0 0 0 0 0 0 6061600 3600600 2461000 0 0 0 5885000 3293500 2591500 0 0 0 27328 2498 28782 144712;144713 145752 145752 1 QGTYGGYFR LGSLVENNERVFDHKQGTYGGYFRDQKDGY RVFDHKQGTYGGYFRDQKDGYRKNEGYMRR K Q G F R D 0 1 0 0 0 1 0 3 0 0 0 0 0 1 0 0 1 0 2 0 0 0 9 0 1047.4774 Q99613;B5ME19 Q99613 878 886 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.01317 45.68 By matching By MS/MS 1 1 1.257 1.1337 10.92 2 Median 1.26 1.2247 NaN 1 0 Median 1.2539 1.0495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13035000 6126700 6908400 3298800 1425800 1873000 9736300 4700900 5035400 0 0 0 0 0 0 0 0 0 0 0 0 27329 3757 28783 144714;144715 145753 145753 1 QGVDADINGLR LDDFRIKFEMEQNLRQGVDADINGLRQVLD QNLRQGVDADINGLRQVLDNLTMEKSDLEM R Q G L R Q 1 1 1 2 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1156.5836 P35527;CON__P35527;K7EQQ3 P35527 251 261 KRT9 Keratin, type I cytoskeletal 9 yes no 2 6.1479E-75 214.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 6 9 5 4 0.12288 0.10339 112.83 33 Median 0.089624 0.086916 55.068 7 7 Median 0.17547 0.15186 150.27 5 5 Median 0.053931 0.054685 121.96 6 6 Median 0.099234 0.085214 109.96 8 8 Median 0.26243 0.27055 111.78 4 4 Median 0.17297 0.14048 129.18 3 3 Median 311650000 258150000 53500000 65778000 60429000 5348400 28337000 22298000 6038400 82635000 74768000 7866200 47254000 35537000 11717000 66575000 50414000 16161000 21071000 14703000 6368400 + 27330 2242 28784 144716;144717;144718;144719;144720;144721;144722;144723;144724;144725;144726;144727;144728;144729;144730;144731;144732;144733;144734;144735;144736;144737;144738;144739;144740;144741;144742;144743;144744;144745;144746;144747;144748;144749;144750;144751 145754;145755;145756;145757;145758;145759;145760;145761;145762;145763;145764;145765;145766;145767;145768;145769;145770;145771;145772;145773;145774;145775;145776;145777;145778;145779;145780;145781;145782;145783;145784;145785;145786;145787;145788;145789 145761 36 QGVEDAFYTLVR KSYGIPFIETSAKTRQGVEDAFYTLVREIR KTRQGVEDAFYTLVREIRQYRMKKLNSSDD R Q G V R E 1 1 0 1 0 1 1 1 0 0 1 0 0 1 0 0 1 0 1 2 0 0 12 0 1396.6987 P01111;P01112 P01111 150 161 NRAS;HRAS GTPase NRas;GTPase HRas;GTPase HRas, N-terminally processed no no 2 0.001379 72.006 By MS/MS By MS/MS 2 1 1.323 1.3209 7.0327 3 Median 1.2927 1.2544 7.3015 2 1 Median 1.6357 1.3626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5017900 2216300 2801600 4110100 1838300 2271800 907750 377920 529820 0 0 0 0 0 0 0 0 0 0 0 0 27331 1831;1832 28785 144752;144753;144754 145790;145791;145792;145793 145793 4 QGVPMNSLR MTTHLKKLKESYCQRQGVPMNSLRFLFEGQ ESYCQRQGVPMNSLRFLFEGQRIADNHTPK R Q G L R F 0 1 1 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 9 0 1000.5124 B8ZZN6;P63165;B8ZZ67 B8ZZN6 55 63 SUMO1 Small ubiquitin-related modifier 1 yes no 2 0.0057051 56.81 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1257 1.1406 24.664 5 Median 1.5854 1.5765 NaN 1 0 Median 1.2534 1.0534 27.81 2 0 Median 0.99003 1.0208 15.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15323000 8112900 7209600 1373500 700070 673430 5319900 2646300 2673600 8629100 4766500 3862600 0 0 0 0 0 0 0 0 0 27332 649 28786 144755;144756;144757;144758;144759;144760 145794;145795;145796 145795 3 QGVQVQVSTSNISSLEGAR IRTGYQAKQVRRWRRQGVQVQVSTSNISSL VQVSTSNISSLEGARGLIAEAAQLGPVGGV R Q G A R G 1 1 1 0 0 3 1 2 0 1 1 0 0 0 0 4 1 0 0 3 0 0 19 0 1959.0021 P49327;A0A0U1RQF0 P49327 1935 1953 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.2528E-18 101.39 By MS/MS By MS/MS 2 1 1.4709 1.3802 50.056 3 Median 0.88356 0.89556 61.173 2 1 Median 1.6197 1.3854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48556000 21152000 27404000 43958000 19446000 24512000 4598600 1706100 2892500 0 0 0 0 0 0 0 0 0 0 0 0 27333 2377 28787 144761;144762;144763 145797;145798;145799 145797 3 QGWLAALQDR PLLGGIPESGGPDARQGWLAALQDRSILAP GPDARQGWLAALQDRSILAPLAWDLGLLLL R Q G D R S 2 1 0 1 0 2 0 1 0 0 2 0 0 0 0 0 0 1 0 0 0 0 10 0 1156.5989 Q8IXM6;H0Y6T6 Q8IXM6 48 57 NRM Nurim yes no 2 0.013464 40.002 By MS/MS 1 0.79601 0.75271 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79601 0.75271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2389900 1353400 1036500 0 0 0 0 0 0 2389900 1353400 1036500 0 0 0 0 0 0 0 0 0 27334 3335 28788 144764 145800 145800 1 QGYGEGFR NARPMEVFMCSVLKRQGYGEGFRWLSQYID MCSVLKRQGYGEGFRWLSQYID________ R Q G F R W 0 1 0 0 0 1 1 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 8 0 912.40898 Q9NR31;H0Y5E8;Q9Y6B6;Q9H029 Q9NR31 184 191 SAR1A;SAR1B;DKFZp434B2017 GTP-binding protein SAR1a;GTP-binding protein SAR1b no no 2 0.0046696 80.229 By MS/MS By MS/MS 1 1 1.2428 1.1004 13.641 2 Median 1.0588 0.99923 NaN 1 0 Median 1.4589 1.2118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6608500 3166500 3442000 4894500 2432900 2461700 1714000 733680 980280 0 0 0 0 0 0 0 0 0 0 0 0 27335 4077;4487 28789 144765;144766 145801;145802;145803 145801 3 QGYNMLNLLIHR STKLDWVEVGLQVCRQGYNMLNLLIHRKNL VCRQGYNMLNLLIHRKNLNYLHLDYNFNLK R Q G H R K 0 1 2 0 0 1 0 1 1 1 3 0 1 0 0 0 0 0 1 0 0 0 12 0 1470.7766 Q6P2Q9;I3L0J9 Q6P2Q9 499 510 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.0072582 29.807 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.3243 1.2083 13.085 6 Median 1.1081 1.1078 NaN 1 0 Median 1.4153 1.2422 13.979 2 0 Median 0.89855 0.99846 NaN 1 0 Median 1.4954 1.2975 NaN 1 0 Median 1.3515 1.3693 NaN 1 0 Median NaN NaN NaN 0 0 Median 4841400 2552500 2289000 801490 441330 360160 662500 305210 357290 2867100 1602300 1264900 106270 36333 69938 404060 167340 236720 0 0 0 27336 3157 28790 144767;144768;144769;144770;144771;144772 145804;145805;145806 145805 3 QGYVLSSIEGR SLKYQTRCIRAFPNKQGYVLSSIEGRVAVE FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK K Q G G R V 0 1 0 0 0 1 1 2 0 1 1 0 0 0 0 2 0 0 1 1 0 0 11 0 1207.6197 O43684;J3QT28 O43684 192 202 BUB3 Mitotic checkpoint protein BUB3 yes no 2 1.0339E-05 103.26 By MS/MS By MS/MS By matching 3 1 1 1.1096 0.991 41.114 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0177 0.991 NaN 1 1 Median 1.1096 0.94144 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2941 1.9661 NaN 1 0 Median 21980000 10174000 11805000 0 0 0 0 0 0 13685000 6644300 7040900 7041700 3125800 3915900 0 0 0 1252800 404250 848540 27337 1357 28791 144773;144774;144775;144776;144777 145807;145808;145809;145810;145811 145809 5 QHEADADLINAGK LQSENGVLGLGPYPRQHEADADLINAGKET PRQHEADADLINAGKETVTILPGASFFSSD R Q H G K E 3 0 1 2 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 13 0 1380.6634 P55809;E9PDW2 P55809 356 368 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2;3 0.0038259 34.05 By MS/MS By MS/MS 1 1 1.0596 0.96778 21.578 2 Median 0.86177 0.83083 NaN 1 0 Median 1.3028 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3849200 1881200 1968000 2339000 1298800 1040200 1510200 582340 927870 0 0 0 0 0 0 0 0 0 0 0 0 27338 2503 28792 144778;144779 145812;145813 145813 2 QHFISFDTDR FNEFKELWAVLNGWRQHFISFDTDRSGTVD LNGWRQHFISFDTDRSGTVDPQELQKALTT R Q H D R S 0 1 0 2 0 1 0 0 1 1 0 0 0 2 0 1 1 0 0 0 0 0 10 0 1264.5836 C9J0K6;P30626 C9J0K6 64 73 SRI Sorcin yes no 2;3 0.0015332 50.108 By MS/MS By MS/MS 1 3 1.0688 0.91375 4.2399 3 Median 1.04 0.98314 NaN 1 0 Median 1.0812 0.91353 0.034058 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7719300 3565400 4153900 6528400 3046700 3481600 1190900 518690 672220 0 0 0 0 0 0 0 0 0 0 0 0 27339 669 28793 144780;144781;144782;144783 145814;145815;145816 145814 3 QHIQDGALR GPYGWEFHDGLSFGRQHIQDGALRLTTEFV GLSFGRQHIQDGALRLTTEFVKRPGGQHGG R Q H L R L 1 1 0 1 0 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1036.5414 Q13724;A0A3B3ITC1;C9JDQ1;A0A3B3IRI7;A0A3B3ITU6;B8ZZE2 Q13724 159 167 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.017009 42.109 By matching By MS/MS 1 1 1.2191 1.1613 13.787 2 Median 1.2802 1.2802 NaN 1 0 Median 1.161 1.0534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1033000 469700 563260 184300 76584 107710 848670 393120 455550 0 0 0 0 0 0 0 0 0 0 0 0 27340 2835 28794 144784;144785 145817;145818 145817 2 QHITLALEK DQLNRELAEQKATEKQHITLALEKQKLEEK QKATEKQHITLALEKQKLEEKRAFDSAVAK K Q H E K Q 1 0 0 0 0 1 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1051.6026 Q16891;B9A067;C9J406;H7C463 Q16891 428 436 IMMT MICOS complex subunit MIC60 yes no 2 0.003016 68.016 By MS/MS By MS/MS 2 1 0.80033 0.81777 26.992 3 Median 0.83034 0.90175 13.825 2 0 Median 0.66765 0.58322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16965000 9264900 7699600 9690800 4790600 4900200 7273700 4474300 2799400 0 0 0 0 0 0 0 0 0 0 0 0 27341 3001 28795 144786;144787;144788 145819;145820;145821 145819 3 QHLASIYEKEEDWR QPRVISFEEQVASIRQHLASIYEKEEDWRN RQHLASIYEKEEDWRNAAQVLVGIPLETGQ R Q H W R N 1 1 0 1 0 1 3 0 1 1 1 1 0 0 0 1 0 1 1 0 0 0 14 1 1802.8588 D6RAX7;Q9BT78;D6RFN0 D6RAX7 108 121 COPS4 COP9 signalosome complex subunit 4 yes no 3;4 0.0002265 61.212 By MS/MS 2 1.0512 1.1953 2.9038 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0512 1.1953 2.9038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15397000 7031400 8365100 0 0 0 0 0 0 15397000 7031400 8365100 0 0 0 0 0 0 0 0 0 27342 813 28796 144789;144790 145822;145823;145824;145825 145825 4 QHLEEQRLQQERQR QEALVRERERQLAKRQHLEEQRLQQERQRE RQHLEEQRLQQERQREQEQRRERKRKISCL R Q H Q R E 0 3 0 0 0 5 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 14 2 1876.9616 Q9Y247 Q9Y247 92 105 FAM50B Protein FAM50B yes yes 4 0.065085 11.692 By MS/MS 1 1.2631 1.3748 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2631 1.3748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9655400 3729200 5926200 0 0 0 0 0 0 0 0 0 9655400 3729200 5926200 0 0 0 0 0 0 27343 4373 28797 144791 145826 145826 1 QHLEITGGQVR TPGYVVTPHTMNLLKQHLEITGGQVRTRFP NLLKQHLEITGGQVRTRFPPEPNGILHIGH K Q H V R T 0 1 0 0 0 2 1 2 1 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1236.6575 P47897;A0A1B0GVU9;B4DDN1;C9J165;A0A0U1RR66 P47897 255 265 QARS Glutamine--tRNA ligase yes no 2;3 0.00020344 102.61 By MS/MS By MS/MS 1 2 1.1172 1.1013 14.295 3 Median 1.1172 1.1013 NaN 1 0 Median 1.1432 0.99512 18.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6603800 3535200 3068500 2229700 1223400 1006400 4374000 2311900 2062100 0 0 0 0 0 0 0 0 0 0 0 0 27344 2356 28798 144792;144793;144794 145827;145828;145829;145830;145831 145831 5 QHLSNMEVQVASQSSQR KELLKNAQKEIATLKQHLSNMEVQVASQSS LSNMEVQVASQSSQRTGKGQPSNKEDVDDL K Q H Q R T 1 1 1 0 0 4 1 0 1 0 1 0 1 0 0 4 0 0 0 2 0 0 17 0 1927.917 P12270 P12270 906 922 TPR Nucleoprotein TPR yes yes 2;3 4.0645E-40 156.98 By MS/MS By MS/MS 1 2 0.98609 0.87425 17.378 3 Median NaN NaN NaN 0 0 Median 1.024 0.87425 NaN 1 1 Median 0.83925 0.92361 24.164 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34541000 20686000 13855000 0 0 0 6876500 3105300 3771200 27665000 17581000 10083000 0 0 0 0 0 0 0 0 0 27345 1978 28799 144795;144796;144797 145832;145833;145834 145834 3 QHLSSVVFIK VSRWFCHIQHYPGIRQHLSSVVFIKNRLYT YPGIRQHLSSVVFIKNRLYTNSH_______ R Q H I K N 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 0 2 0 0 10 0 1156.6604 O43324 O43324 157 166 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes yes 2 0.00044384 89.698 By MS/MS By MS/MS 1 1 1.1325 1.0189 2.1951 2 Median 1.0951 1.0349 NaN 1 0 Median 1.1711 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16925000 7735100 9189700 8384400 4001200 4383200 8540400 3733900 4806500 0 0 0 0 0 0 0 0 0 0 0 0 27346 1566 28800 144798;144799 145835;145836;145837;145838 145838 4 QHMDITGEENPLNK AYTCLEAATGRALLRQHMDITGEENPLNKL RQHMDITGEENPLNKLRVKIEPGVDPDDTY R Q H N K L 0 0 2 1 0 1 2 1 1 1 1 1 1 0 1 0 1 0 0 0 0 0 14 0 1624.7515 Q9H4A4;A6NKB8;C9JMZ3 Q9H4A4 381 394 RNPEP Aminopeptidase B yes no 3 0.00028268 51.009 By MS/MS By matching 1 1 0.99136 0.89113 21.347 2 Median 0.81001 0.76628 NaN 1 0 Median 1.2133 1.0363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12723000 7417600 5305700 8688500 4499000 4189500 4034900 2918600 1116300 0 0 0 0 0 0 0 0 0 0 0 0 27347 3964 28801 144800;144801 145839 145839 1 QHPQPYIFPDSPGGTSYER ATQLLKEAEEEFWYRQHPQPYIFPDSPGGT PYIFPDSPGGTSYERYDCYKVPEWCLDDWH R Q H E R Y 0 1 0 1 0 2 1 2 1 1 0 0 0 1 4 2 1 0 2 0 0 0 19 0 2175.0021 A0A3B3IT57;E9PH64;E7EWZ0;E9PF49;Q9Y6M9 A0A3B3IT57 75 93 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes no 3 6.3935E-19 123.4 By MS/MS 1 0.5571 0.52826 NaN 1 Median 0.5571 0.52826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11349000 5841300 5507700 11349000 5841300 5507700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27348 433 28802 144802 145840 145840 1 QHQLYVGVLGSK RSAKGEEVDVARAERQHQLYVGVLGSKLGL AERQHQLYVGVLGSKLGLQVVELPADESLP R Q H S K L 0 0 0 0 0 2 0 2 1 0 2 1 0 0 0 1 0 0 1 2 0 0 12 0 1327.7248 O94760 O94760 46 57 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes yes 2 8.5124E-05 92.611 By MS/MS By matching 1 1 0.99963 1.0055 10.972 2 Median 1.0244 0.93045 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97545 1.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24031000 11544000 12487000 21707000 10396000 11311000 0 0 0 2324400 1147900 1176500 0 0 0 0 0 0 0 0 0 27349 1722 28803 144803;144804 145841;145842 145842 2 QHQPTDMVMENLK LLKSSIFEEISKKYKQHQPTDMVMENLKKL YKQHQPTDMVMENLKKLLTYCEDVYLYYKL K Q H L K K 0 0 1 1 0 2 1 0 1 0 1 1 2 0 1 0 1 0 0 1 0 0 13 0 1569.7279 H0YLK7;Q96JI7 H0YLK7 511 523 SPG11 Spatacsin yes no 2 0.0048603 42.336 By MS/MS By matching By matching By matching By matching By matching 1 3 2 2 1 2 1.1087 1.0036 18.115 11 Median 1.2725 1.2269 NaN 1 0 Median 1.3273 1.1678 19.958 3 0 Median 0.78388 0.85341 22.928 2 0 Median 1.0851 1.0076 6.6701 2 0 Median 1.0538 1.1026 NaN 1 0 Median 1.0857 0.92482 7.3636 2 0 Median 62004000 30080000 31923000 7118000 2670000 4448000 9521600 4173900 5347700 33526000 17629000 15898000 3510400 1589700 1920600 7320000 3526700 3793300 1007300 491270 516050 27350 1196 28804 144805;144806;144807;144808;144809;144810;144811;144812;144813;144814;144815 145843;145844 145843 401;402 2 QHSNSNMVIMLIGNK RDTFNHLTTWLEDARQHSNSNMVIMLIGNK QHSNSNMVIMLIGNKSDLESRREVKKEEGE R Q H N K S 0 0 3 0 0 1 0 1 1 2 1 1 2 0 0 2 0 0 0 1 0 0 15 0 1684.8389 P61019;E9PKL7;H7C125 P61019 106 120 RAB2A Ras-related protein Rab-2A yes no 3 5.2877E-05 74.769 By MS/MS By matching 1 1 1.0845 0.96729 9.9582 2 Median 0.9686 0.90153 NaN 1 0 Median 1.2144 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17512000 8095700 9415900 16416000 7563000 8853400 1095200 532720 562510 0 0 0 0 0 0 0 0 0 0 0 0 27351 2537 28805 144816;144817 145845;145846 145845 2 QHTDTVVNFLIR SLPGADSLLAKPIDKQHTDTVVNFLIRVAC IDKQHTDTVVNFLIRVACQVNDNTNTAGSP K Q H I R V 0 1 1 1 0 1 0 0 1 1 1 0 0 1 0 0 2 0 0 2 0 0 12 0 1441.7678 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2073 2084 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00027474 58.132 By MS/MS 1 0.89675 0.99826 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89675 0.99826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2111900 1197200 914650 0 0 0 0 0 0 2111900 1197200 914650 0 0 0 0 0 0 0 0 0 27352 991 28806 144818 145847;145848 145848 2 QHTFVETESVR EGLLAAFPKLMNTGKQHTFVETESVRYVYQ NTGKQHTFVETESVRYVYQPMEKLYMVLIT K Q H V R Y 0 1 0 0 0 1 2 0 1 0 0 0 0 1 0 1 2 0 0 2 0 0 11 0 1331.647 B0YIW6;P48444;Q6P1Q5 B0YIW6 86 96 ARCN1 Coatomer subunit delta yes no 3 0.0051943 51.567 By MS/MS 1 1.219 1.0513 NaN 1 Median NaN NaN NaN 0 0 Median 1.219 1.0513 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2124900 878570 1246400 0 0 0 2124900 878570 1246400 0 0 0 0 0 0 0 0 0 0 0 0 27353 561 28807 144819 145849 145849 1 QHVTEAFQFHF VMGISSLLPSLEAWKQHVTEAFQFHF____ EAWKQHVTEAFQFHF_______________ K Q H H F - 1 0 0 0 0 2 1 0 2 0 0 0 0 3 0 0 1 0 0 1 0 0 11 0 1389.6466 A0A286YF22;O43175;A0A286YFA2 A0A286YF22 516 526 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.026602 50.607 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3252900 0 0 3252900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27354 351 28808 144820 145850 145850 1 QHWTMTK DAQKVTEGQQERLERQHWTMTKIQKHQEHI GQQERLERQHWTMTKIQKHQEHILRFASWA R Q H T K I 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 2 1 0 0 0 0 7 0 930.43817 Q13263 Q13263 331 337 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.016986 67.032 By MS/MS 1 1.109 0.97503 NaN 1 Median NaN NaN NaN 0 0 Median 1.109 0.97503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3144800 1419400 1725400 0 0 0 3144800 1419400 1725400 0 0 0 0 0 0 0 0 0 0 0 0 27355 2802 28809 144821 145851;145852 145851 2 QHYIDLK LVAMKFLRASEEHLKQHYIDLKDRPFFPGL RASEEHLKQHYIDLKDRPFFPGLVKYMNSG K Q H L K D 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 7 0 915.48142 Q32Q12;J3KPD9;P22392;O60361;F6XY72 Q32Q12 190 196 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.028142 67.032 By MS/MS 1 1.3259 1.133 NaN 1 Median NaN NaN NaN 0 0 Median 1.3259 1.133 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18419000 7816600 10602000 0 0 0 18419000 7816600 10602000 0 0 0 0 0 0 0 0 0 0 0 0 27356 3008 28810 144822 145853 145853 1 QIAAIHKDLEDTEANKEK KELKSLDQAINDKKRQIAAIHKDLEDTEAN AIHKDLEDTEANKEKNLEQYNKLDQDLNEV R Q I E K N 3 0 1 2 0 1 3 0 1 2 1 3 0 0 0 0 1 0 0 0 0 0 18 2 2052.0487 Q9UQE7 Q9UQE7 412 429 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3;4 0.0001203 38.824 By MS/MS By matching 2 1 0.79924 0.9604 13.272 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89007 1.0696 15.224 2 0 Median NaN NaN NaN 0 0 Median 0.79874 0.935 NaN 1 0 Median NaN NaN NaN 0 0 Median 27138000 13753000 13384000 0 0 0 0 0 0 23685000 11862000 11823000 0 0 0 3452600 1891400 1561100 0 0 0 27357 4362 28811 144823;144824;144825 145854;145855;145856 145855 3 QIAASSQDSVGR SLSTSKLNSLAIGLRQIAASSQDSVGRVLR GLRQIAASSQDSVGRVLRRTRIAKNLELEQ R Q I G R V 2 1 0 1 0 2 0 1 0 1 0 0 0 0 0 3 0 0 0 1 0 0 12 0 1217.6 P54886 P54886 442 453 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.00040451 79.693 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1.3974 1.2465 7.3395 8 Median 1.1227 1.114 NaN 1 0 Median 1.4192 1.2321 1.5154 2 0 Median 1.279 1.3357 3.2796 2 0 Median 1.4516 1.2476 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4728 1.2381 11.776 2 0 Median 19844000 8222700 11621000 1388000 623980 763990 7795000 3086400 4708500 8449700 3708100 4741600 999850 359090 640760 0 0 0 1211200 445180 766020 27358 2488 28812 144826;144827;144828;144829;144830;144831;144832;144833 145857;145858;145859;145860;145861;145862;145863;145864;145865;145866 145860 10 QIAEEDFYEK DDESGAGELTREELRQIAEEDFYEKLAASI REELRQIAEEDFYEKLAASIAPEIYGHEDV R Q I E K L 1 0 0 1 0 1 3 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 10 0 1270.5717 P33993 P33993 326 335 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0093173 45.368 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0302 0.97267 17.555 4 Median 0.95042 0.8458 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.827 0.83292 NaN 1 0 Median 1.145 1.1186 NaN 1 0 Median 1.1167 1.1546 NaN 1 0 Median NaN NaN NaN 0 0 Median 42259000 21376000 20883000 24346000 12139000 12207000 0 0 0 14347000 7178200 7168500 673520 327380 346140 2893100 1731100 1162000 0 0 0 27359 2225 28813 144834;144835;144836;144837 145867;145868;145869 145869 3 QIALAVLSTELAVR PDLLQQAKCLGFSDKQIALAVLSTELAVRK KQIALAVLSTELAVRKLRQELGICPAVKQI K Q I V R K 3 1 0 0 0 1 1 0 0 1 3 0 0 0 0 1 1 0 0 2 0 0 14 0 1482.877 F8VPD4;P27708 F8VPD4 812 825 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00010811 84.658 By MS/MS 1 1.1694 0.99303 NaN 1 Median NaN NaN NaN 0 0 Median 1.1694 0.99303 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3227500 1346700 1880800 0 0 0 3227500 1346700 1880800 0 0 0 0 0 0 0 0 0 0 0 0 27360 1057 28814 144838 145870 145870 1 QIALGTSK LMKLEVQATDREENKQIALGTSKLNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK K Q I S K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 816.47052 P11387 P11387 713 720 TOP1 DNA topoisomerase 1 yes yes 2 0.023183 44.349 By MS/MS By MS/MS 1 1 1.381 1.3261 13.379 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1375 1.2064 NaN 1 0 Median 1.6765 1.4577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2764700 1169600 1595100 0 0 0 0 0 0 1925200 824880 1100300 839510 344710 494790 0 0 0 0 0 0 27361 1962 28815 144839;144840 145871;145872 145871 2 QIATLHAQVADMK EQLEEEEEAKHNLEKQIATLHAQVADMKKK EKQIATLHAQVADMKKKMEDSVGCLETAEE K Q I M K K 3 0 0 1 0 2 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 13 0 1424.7446 P35579 P35579 1358 1370 MYH9 Myosin-9 yes yes 2;3 4.1247E-11 179.19 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1883 1.175 21.643 6 Median 1.453 1.3941 16.652 2 0 Median 1.0248 0.90715 13.223 2 1 Median 1.0893 1.2109 NaN 1 0 Median 1.2544 1.1402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133350000 59211000 74142000 60314000 25259000 35055000 65549000 30594000 34955000 6711900 3024000 3687800 779420 334610 444810 0 0 0 0 0 0 27362 2244 28816 144841;144842;144843;144844;144845;144846 145873;145874;145875;145876;145877;145878;145879;145880 145880 8 QIATLHAQVADMKK EQLEEEEEAKHNLEKQIATLHAQVADMKKK KQIATLHAQVADMKKKMEDSVGCLETAEEV K Q I K K K 3 0 0 1 0 2 0 0 1 1 1 2 1 0 0 0 1 0 0 1 0 0 14 1 1552.8395 P35579 P35579 1358 1371 MYH9 Myosin-9 yes yes 3 0.00017403 62.68 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.85472 0.85409 26.473 4 Median 1.1023 1.0532 NaN 1 0 Median 1.1498 1.0972 NaN 1 0 Median 0.58204 0.66895 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66275 0.69263 NaN 1 0 Median NaN NaN NaN 0 0 Median 39012000 18835000 20177000 16866000 7900100 8965900 18243000 8423100 9819700 2700300 1660300 1040000 0 0 0 1202600 851580 351040 0 0 0 27363 2244 28817 144847;144848;144849;144850 145881;145882;145883;145884 145884 4 QIDATFVR PQYRRKVMLALPSVRQIDATFVRF______ LALPSVRQIDATFVRF______________ R Q I V R F 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 948.50288 H7C003;Q15435;H7C3Q5 H7C003 327 334 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.036811 37.558 By MS/MS 1 1.7903 1.5299 NaN 1 Median NaN NaN NaN 0 0 Median 1.7903 1.5299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1808700 675190 1133500 0 0 0 1808700 675190 1133500 0 0 0 0 0 0 0 0 0 0 0 0 27364 1254 28818 144851 145885 145885 1 QIDFPLR SREQGHAPGGTSQARQIDFPLRILVPTQFV PGGTSQARQIDFPLRILVPTQFVGAIIGKE R Q I L R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 7 0 887.4865 F8W930;Q9Y6M1 F8W930 197 203 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.040961 44.611 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.94663 0.84047 14.204 5 Median 0.76005 0.76839 NaN 1 0 Median 1.0246 0.9138 NaN 1 0 Median 0.94663 0.99895 NaN 1 0 Median 0.79998 0.69534 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97092 0.84047 NaN 1 0 Median 4210800 2286100 1924600 2075200 1127500 947620 353050 171530 181520 1088600 628150 460440 149790 88315 61473 0 0 0 544190 270600 273580 27365 1088 28819 144852;144853;144854;144855;144856 145886 145886 1 QIDLSTVDLK LKKKDSQICELKYDKQIDLSTVDLKKLRVK LKYDKQIDLSTVDLKKLRVKELKKILDDWG K Q I L K K 0 0 0 2 0 1 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1130.6183 P55145;A8K878 P55145 124 133 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2 0.017044 38.086 By MS/MS By matching By matching 1 1 1 1.0107 0.9767 20.974 3 Median 0.90273 0.85273 NaN 1 0 Median 1.4675 1.287 NaN 1 0 Median 1.0107 0.9767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7690900 3617000 4073900 2171900 1065800 1106100 351620 143000 208620 5167300 2408200 2759200 0 0 0 0 0 0 0 0 0 27366 538 28820 144857;144858;144859 145887 145887 1 QIDLSTVDLKK LKKKDSQICELKYDKQIDLSTVDLKKLRVK KYDKQIDLSTVDLKKLRVKELKKILDDWGE K Q I K K L 0 0 0 2 0 1 0 0 0 1 2 2 0 0 0 1 1 0 0 1 0 0 11 1 1258.7133 P55145;A8K878 P55145 124 134 MANF Mesencephalic astrocyte-derived neurotrophic factor yes no 2;3 0.00061599 53.756 By MS/MS By matching By MS/MS By MS/MS 3 3 2 2 1.3691 1.2853 24.464 10 Median 1.2208 1.2215 18.369 3 0 Median 1.417 1.2528 21.992 3 0 Median 1.2686 1.2757 4.6668 2 0 Median 2.1212 1.9104 34.243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44693000 18570000 26123000 13471000 6009100 7461900 5680800 2104200 3576600 16242000 7295100 8947200 9299200 3162100 6137100 0 0 0 0 0 0 27367 538 28821 144860;144861;144862;144863;144864;144865;144866;144867;144868;144869 145888;145889;145890;145891;145892;145893;145894;145895 145889 8 QIDNPDYK PVIQNPEYKGEWKPRQIDNPDYKGTWIHPE KGEWKPRQIDNPDYKGTWIHPEIDNPEYSP R Q I Y K G 0 0 1 2 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 8 0 991.46108 P27797;K7EJB9;K7EL50 P27797 279 286 CALR Calreticulin yes no 2 0.0064162 71.342 By matching By MS/MS 1 1 1.0164 0.90239 3.5432 2 Median 0.94454 0.88006 NaN 1 0 Median 1.0937 0.92528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31456000 15464000 15992000 9460400 4778700 4681700 21996000 10685000 11311000 0 0 0 0 0 0 0 0 0 0 0 0 27368 2157 28822 144870;144871 145896 145896 1 QIDQFANEVER YPGIQTRVLDVTKKKQIDQFANEVERLDVL TKKKQIDQFANEVERLDVLFNVAGFVHHGT K Q I E R L 1 1 1 1 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1347.6419 Q9BUT1;D6RFG2;D6R9U8;D6RIR6 Q9BUT1 64 74 BDH2 3-hydroxybutyrate dehydrogenase type 2 yes no 2 6.787E-08 132.01 By MS/MS 1 1.1224 1.0645 NaN 1 Median 1.1224 1.0645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12156000 4882200 7273500 12156000 4882200 7273500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27369 3843 28823 144872 145897 145897 1 QIDQFLVVAR MEMKVWDPDNPLTDRQIDQFLVVARAVGTF PLTDRQIDQFLVVARAVGTFARALDCSSSI R Q I A R A 1 1 0 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1187.6663 O94776;E7ESY4;Q13330;H0Y4T7;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2 O94776 189 198 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 2 0.00037046 82.279 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.1111 1.1112 15.953 6 Median 0.86261 0.83172 NaN 1 0 Median 1.1116 0.96202 NaN 1 0 Median 1.1035 1.1112 0.8372 2 1 Median NaN NaN NaN 0 0 Median 1.2234 1.2428 6.9149 2 0 Median NaN NaN NaN 0 0 Median 65177000 31783000 33393000 4029900 2558200 1471700 5236700 2627000 2609700 43935000 20863000 23072000 0 0 0 11976000 5735200 6240400 0 0 0 27370 1723;888;881 28824 144873;144874;144875;144876;144877;144878 145898;145899;145900;145901;145902 145900 5 QIEELKGQEVSPK LLFPLTAQHENFRKKQIEELKGQEVSPKVY KKQIEELKGQEVSPKVYFMKQTIGNSCGTI K Q I P K V 0 0 0 0 0 2 3 1 0 1 1 2 0 0 1 1 0 0 0 1 0 0 13 1 1483.7882 P09936;D6RE83;D6R956;D6R974 P09936 66 78 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 0.00011058 93.821 By matching By MS/MS By MS/MS 1 2 1 1.0219 0.93319 24.803 4 Median 0.74849 0.76334 NaN 1 0 Median 1.0219 0.93319 0.98576 2 0 Median 1.3833 1.3802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25621000 11853000 13768000 328540 184490 144060 19570000 9668000 9901800 5722400 2000700 3721700 0 0 0 0 0 0 0 0 0 27371 1923 28825 144879;144880;144881;144882 145903;145904;145905;145906;145907;145908 145907 6 QIEEQTIK ERIEREKEELMERLKQIEEQTIKAQKELEE ELMERLKQIEEQTIKAQKELEEQTRKALEL K Q I I K A 0 0 0 0 0 2 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 P35241;A0A2R8Y5S7;A0A2R8Y7M3 P35241 353 360 RDX Radixin yes no 2 0.055161 33.642 By matching By MS/MS 1 1 0.95095 0.98145 5.6825 2 Median 1.0045 1.0217 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90021 0.9428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6470900 3290400 3180400 789580 438220 351360 0 0 0 5681300 2852200 2829000 0 0 0 0 0 0 0 0 0 27372 2235 28826 144883;144884 145909 145909 1 QIEINTISASFGGLASR DYMFQRSADGSPALKQIEINTISASFGGLA EINTISASFGGLASRTPAVHRHVLSVLSKT K Q I S R T 2 1 1 0 0 1 1 2 0 3 1 0 0 1 0 3 1 0 0 0 0 0 17 0 1762.9214 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y7I7 A0A2R8Y430 142 158 GSS Glutathione synthetase yes no 2 0.042311 22.232 By MS/MS 1 1.7066 1.4834 NaN 1 Median NaN NaN NaN 0 0 Median 1.7066 1.4834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1471300 597330 874000 0 0 0 1471300 597330 874000 0 0 0 0 0 0 0 0 0 0 0 0 27373 358 28827 144885 145910 145910 1 QIEIQFAQGDR EDALHNLDRKWICGRQIEIQFAQGDRKTPN ICGRQIEIQFAQGDRKTPNQMKAKEGRNVY R Q I D R K 1 1 0 1 0 3 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1303.6521 Q5JRI1;O75494;Q8WXF0 Q5JRI1 80 90 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 2 0.00011548 133.13 By MS/MS By MS/MS 3 2 1.0846 1.0184 7.8328 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0846 1.0935 8.7822 3 0 Plateau 1.1755 0.96354 7.8254 2 0 Median 53296000 26604000 26693000 0 0 0 0 0 0 0 0 0 0 0 0 40965000 20046000 20920000 12331000 6558400 5772800 27374 1679;3519 28828 144886;144887;144888;144889;144890 145911;145912;145913;145914 145911 4 QIEIQFAQGDRK EDALHNLDRKWICGRQIEIQFAQGDRKTPN CGRQIEIQFAQGDRKTPNQMKAKEGRNVYS R Q I R K T 1 1 0 1 0 3 1 1 0 2 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1431.747 Q5JRI1;O75494;Q8WXF0 Q5JRI1 80 91 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 2;3 9.864E-06 129.85 By MS/MS By MS/MS 4 1 1.038 1.1095 17.235 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97391 1.048 19.756 4 1 Median 1.2571 1.1095 NaN 1 0 Median 60679000 26059000 34620000 0 0 0 0 0 0 0 0 0 0 0 0 54582000 23556000 31026000 6097200 2503000 3594300 27375 1679;3519 28829 144891;144892;144893;144894;144895 145915;145916;145917;145918;145919;145920 145918 6 QIESLETEMEFR EVRGQVSESEDSITKQIESLETEMEFRSAQ ITKQIESLETEMEFRSAQIADLQQKLLDAE K Q I F R S 0 1 0 0 0 1 4 0 0 1 1 0 1 1 0 1 1 0 0 0 0 0 12 0 1510.6974 O95239 O95239 819 830 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 3.6978E-06 107.24 By MS/MS 1 1.0757 1.1831 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0757 1.1831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6226500 2911900 3314700 0 0 0 0 0 0 6226500 2911900 3314700 0 0 0 0 0 0 0 0 0 27376 1757 28830 144896 145921;145922 145921 2 QIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM LVEVDSGRQIEYEYKLAQALHEMREQHDAQ R Q I Y K L 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 7 0 971.46001 P20700;E9PBF6;A0A0D9SFE5 P20700 235 241 LMNB1 Lamin-B1 yes no 2 0.015644 70.912 By MS/MS By MS/MS By MS/MS 1 1 2 1.1642 1.0664 12.621 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0096 1.024 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0321 1.0558 NaN 1 0 Median 1.467 1.2056 15.943 2 0 Median 32896000 13741000 19155000 0 0 0 0 0 0 11138000 4418800 6719300 0 0 0 9700800 4330800 5370000 12057000 4991600 7065400 27377 2084 28831 144897;144898;144899;144900 145923;145924;145925;145926;145927;145928;145929 145929 7 QIFLGGVDKHTQFWR FPTQALNFAFKDKYKQIFLGGVDKHTQFWR QIFLGGVDKHTQFWRYFAGNLASGGAAGAT K Q I W R Y 0 1 0 1 0 2 0 2 1 1 1 1 0 2 0 0 1 1 0 1 0 0 15 1 1830.9529 P12236 P12236 97 111 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 3 1.4072E-09 119.25 By MS/MS 1 1.4155 1.4745 NaN 1 Median 1.4155 1.4745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14629000 5854300 8775000 14629000 5854300 8775000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27378 1977 28832 144901 145930;145931 145930 2 QIFLGGVDKR FPTQALNFAFKDKYKQIFLGGVDKRTQFWL KDKYKQIFLGGVDKRTQFWLYFAGNLASGG K Q I K R T 0 1 0 1 0 1 0 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1131.64 P05141 P05141 97 106 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00011106 133.23 By MS/MS By MS/MS By MS/MS 3 5 1 1.5348 1.4886 20.136 8 Median 1.1483 1.18 1.2582 2 0 Median 1.7169 1.5988 17.864 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4298 1.5115 NaN 1 1 Median NaN NaN NaN 0 0 Median 68669000 26824000 41845000 19284000 8232800 11051000 45268000 16900000 28368000 0 0 0 0 0 0 4117200 1691200 2426000 0 0 0 27379 1861 28833 144902;144903;144904;144905;144906;144907;144908;144909;144910 145932;145933;145934;145935;145936;145937 145933 6 QIFNGTFVK VSPKVRKVLQLLRLRQIFNGTFVKLNKASI QLLRLRQIFNGTFVKLNKASINMLRIVEPY R Q I V K L 0 0 1 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 1 0 0 9 0 1052.5655 P18124;A8MUD9;C9JIJ5;C9JZ88 P18124 116 124 RPL7 60S ribosomal protein L7 yes no 2 0.0038329 62.546 By MS/MS By matching By matching By matching By MS/MS 1 1 1 1 2 1.104 1.0438 12.685 6 Median 1.1065 1.0015 NaN 1 1 Median 0.99388 0.84947 NaN 1 0 Median 0.94843 0.91083 NaN 1 0 Median 1.2792 1.0878 NaN 1 0 Median 1.1059 1.1513 1.9477 2 0 Median NaN NaN NaN 0 0 Median 116840000 54492000 62351000 74971000 33734000 41238000 908630 421360 487270 2151200 1093200 1058100 1118500 469550 648920 37693000 18774000 18919000 0 0 0 27380 2056 28834 144911;144912;144913;144914;144915;144916 145938;145939;145940 145940 3 QIGENLIVPGGVK QSFYADIYMEDGLIKQIGENLIVPGGVKTI IKQIGENLIVPGGVKTIEAHSRMVIPGGID K Q I V K T 0 0 1 0 0 1 1 3 0 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1322.7558 Q16555;A0A1C7CYX9;E5RFU4 Q16555 44 56 DPYSL2 Dihydropyrimidinase-related protein 2 no no 2 0.00048985 72.243 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.86793 0.78542 31.386 6 Median 0.65775 0.63232 0.52879 2 0 Median 1.2449 1.1016 17.712 2 0 Median 0.58922 0.62685 NaN 1 0 Median 1.2709 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18947000 10843000 8103500 12768000 7586600 5181500 2459600 1193700 1265900 3382500 1916700 1465800 336370 146090 190280 0 0 0 0 0 0 27381 328 28835 144917;144918;144919;144920;144921;144922 145941;145942;145943 145941 3 QIGLDQIWDDLR ______________________________ GLKQIGLDQIWDDLRAGIQQVYTRQSMAKS K Q I L R A 0 1 0 3 0 2 0 1 0 2 2 0 0 0 0 0 0 1 0 0 0 0 12 0 1470.7467 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJC4;A0A590UJM8;A0A590UJ59;A0A590UJ97 A0A0C4DGX4 14 25 CUL1 Cullin-1 yes no 2 3.9018E-06 106.29 By MS/MS 1 1.3552 1.1721 NaN 1 Median NaN NaN NaN 0 0 Median 1.3552 1.1721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5910600 2695400 3215100 0 0 0 5910600 2695400 3215100 0 0 0 0 0 0 0 0 0 0 0 0 27382 256 28836 144923 145944;145945 145945 2 QIGNVAALPGIVHR ACRGGGVGGFLPAMKQIGNVAALPGIVHRS KQIGNVAALPGIVHRSIGLPDVHSGYGFAI K Q I H R S 2 1 1 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 2 0 0 14 0 1443.831 Q9Y3I0 Q9Y3I0 68 81 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 0.00011648 70.563 By matching By matching By MS/MS By MS/MS By matching By matching 2 2 3 3 1 1 1.1627 1.0857 26.088 12 Median 0.8839 0.85629 8.9813 2 0 Median 1.1868 1.0288 19.887 2 0 Median 1.1019 1.0941 20.059 3 0 Median 1.2442 1.0774 31.872 3 0 Median 1.2267 1.2381 NaN 1 0 Median 2.1083 1.8166 NaN 1 0 Median 78133000 38986000 39147000 14528000 7760100 6768300 3181000 1507200 1673800 53169000 26529000 26640000 5214800 2346100 2868700 1397000 637980 759050 642420 205300 437120 27383 4430 28837 144924;144925;144926;144927;144928;144929;144930;144931;144932;144933;144934;144935 145946;145947;145948;145949;145950;145951 145946 6 QIGTFASVEQFWR PGRPTSSQSYEQNIKQIGTFASVEQFWRFY IKQIGTFASVEQFWRFYSHMVRPGDLTGHS K Q I W R F 1 1 0 0 0 2 1 1 0 1 0 0 0 2 0 1 1 1 0 1 0 0 13 0 1567.7783 O60573;C9JEL3;B9A044;B8ZZ50 O60573 84 96 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 2 0.01349 34.378 By MS/MS 1 1.1558 1.1196 NaN 1 Median 1.1558 1.1196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2048600 1020400 1028100 2048600 1020400 1028100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27384 1622 28838 144936 145952 145952 1 QIGTLLAELR LLLNGARHLGYTLCKQIGTLLAELREYNLE YTLCKQIGTLLAELREYNLEQQRRAQCETL K Q I L R E 1 1 0 0 0 1 1 1 0 1 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1112.6554 Q7Z6Z7;H0Y659;A0A087X146 Q7Z6Z7 3637 3646 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0014621 65.305 By MS/MS By MS/MS By matching 2 3 1 1.0371 0.94642 26.714 6 Median 0.92054 0.92584 37.03 2 0 Median 1.3576 1.1222 26.389 3 0 Median NaN NaN NaN 0 0 Median 0.88956 0.77365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13176000 5963700 7212400 4745400 2347900 2397500 8351300 3581700 4769700 0 0 0 79339 34065 45274 0 0 0 0 0 0 27385 3253 28839 144937;144938;144939;144940;144941;144942 145953;145954;145955 145954 3 QIGVEHVVVYVNK DGPMPQTREHLLLARQIGVEHVVVYVNKAD ARQIGVEHVVVYVNKADAVQDSEMVELVEL R Q I N K A 0 0 1 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 1 5 0 0 13 0 1482.8195 P49411 P49411 170 182 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 0.003654 42.743 By MS/MS By matching By MS/MS 2 3 2 1.07 0.98762 19.618 7 Median 1.0004 0.92479 9.2964 2 0 Median 1.3861 1.1913 10.367 3 0 Median 0.83794 0.82084 10.588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69630000 32253000 37377000 35511000 17301000 18210000 20307000 8806200 11501000 13812000 6145600 7666400 0 0 0 0 0 0 0 0 0 27386 2382 28840 144943;144944;144945;144946;144947;144948;144949 145956;145957;145958;145959;145960;145961 145957 6 QIHKFEELNR ADTKVARRYGDFFIRQIHKFEELNRTLKKM DFFIRQIHKFEELNRTLKKMGQRP______ R Q I N R T 0 1 1 0 0 1 2 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 10 1 1312.6888 B0QY89;Q9Y262;B0QY90 B0QY89 589 598 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 3 0.00033882 68.893 By MS/MS By matching 2 1 1.0967 1.0529 3.0083 2 Median 1.0264 1.0307 NaN 1 0 Median 1.1719 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8554500 3882900 4671600 6172000 2838800 3333200 2382400 1044100 1338400 0 0 0 0 0 0 0 0 0 0 0 0 27387 554 28841 144950;144951;144952 145962;145963;145964 145964 3 QIHLMNSFGFPQYVK LELLEKRVKSRFSHRQIHLMNSFGFPQYVK QIHLMNSFGFPQYVKIFKEQLSLPAEFPDK R Q I V K I 0 0 1 0 0 2 0 1 1 1 1 1 1 2 1 1 0 0 1 1 0 0 15 0 1807.908 O43929 O43929 214 228 ORC4 Origin recognition complex subunit 4 yes yes 3 0.057567 10.787 By MS/MS 2 0.88695 0.93555 6.3192 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88695 0.93555 6.3192 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3516400 1688700 1827700 0 0 0 0 0 0 3516400 1688700 1827700 0 0 0 0 0 0 0 0 0 27388 1602 28842 144953;144954 145965 145965 1 QIHQQLYDR PVTDHLDEQAVQGLKQIHQQLYDRQLYRGL AVQGLKQIHQQLYDRQLYRGLGGQLMRQAV K Q I D R Q 0 1 0 1 0 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 9 0 1199.6047 Q9BTW9;J3KR97;I3L439;I3L0V3;I3L163;I3L143;I3L131;I3L500;I3L3H4;I3L1S3;I3L4D2 Q9BTW9 657 665 TBCD Tubulin-specific chaperone D yes no 2 0.0045216 60.436 By MS/MS 1 0.9053 0.77438 NaN 1 Median NaN NaN NaN 0 0 Median 0.9053 0.77438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2361100 1282400 1078700 0 0 0 2361100 1282400 1078700 0 0 0 0 0 0 0 0 0 0 0 0 27389 1324 28843 144955 145966 145966 1 QIIAGKAVEQGGAFSNPETLDLYR IPYTLNGKKVEVAVKQIIAGKAVEQGGAFS QGGAFSNPETLDLYRDIPELQGF_______ K Q I Y R D 3 1 1 1 0 2 2 3 0 2 2 1 0 1 1 1 1 0 1 1 0 0 24 1 2576.3235 Q86V21 Q86V21 641 664 AACS Acetoacetyl-CoA synthetase yes yes 3 0.050118 10.119 By MS/MS By matching 2 1 0.76666 0.73583 17.438 3 Median 0.80476 0.82287 22.909 2 0 Median 0.76666 0.73583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20714000 11106000 9608300 18686000 10079000 8606400 2028800 1026900 1001900 0 0 0 0 0 0 0 0 0 0 0 0 27390 3284 28844 144956;144957;144958 145967 145967 1 QIIGPFQR LKLIEIENFKSYKGRQIIGPFQRFTAIIGP FKSYKGRQIIGPFQRFTAIIGPNGSGKSNL R Q I Q R F 0 1 0 0 0 2 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 8 0 957.5396 Q14683;V9GYN9 Q14683 19 26 SMC1A Structural maintenance of chromosomes protein 1A yes no 2 0.00065113 99.919 By MS/MS 1 1.9136 2.1038 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9136 2.1038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16464000 5616400 10847000 0 0 0 0 0 0 16464000 5616400 10847000 0 0 0 0 0 0 0 0 0 27391 2889 28845 144959 145968 145968 1 QIIGRPVVVK ______________________________ SDFLKQIIGRPVVVKLNSGVDYRGVLACLD K Q I V K L 0 1 0 0 0 1 0 1 0 2 0 1 0 0 1 0 0 0 0 3 0 0 10 1 1107.7128 P62312 P62312 14 23 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.0017173 98.299 By matching By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 1 1 0.94937 0.93095 6.6618 7 Median 1.0065 0.96552 5.1571 2 0 Median 1.0453 0.90424 NaN 1 0 Median 0.79837 0.98651 NaN 1 0 Median 0.89731 0.88041 NaN 1 0 Median 0.86516 1.0208 NaN 1 0 Median 1.0928 0.86143 NaN 1 0 Median 42226000 21799000 20426000 10549000 5308900 5240500 14227000 7260600 6966500 11564000 6206300 5357900 2167600 960180 1207400 2595500 1454500 1141000 1122000 608950 513010 27392 2584 28846 144960;144961;144962;144963;144964;144965;144966 145969;145970;145971;145972;145973;145974;145975 145969 7 QIILEKEETEELK LLPSDTKRSQIYGSRQIILEKEETEELKRF SRQIILEKEETEELKRFDDPGLMLMGFKPL R Q I L K R 0 0 0 0 0 1 5 0 0 2 2 2 0 0 0 0 1 0 0 0 0 0 13 1 1600.856 P12956;B1AHC9 P12956 326 338 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 0.001142 80.763 By MS/MS By MS/MS By matching 2 1 1 0.94959 0.97906 22.435 4 Median 0.91044 0.85695 26.289 2 1 Median NaN NaN NaN 0 0 Median 0.82115 0.92881 NaN 1 0 Median 1.315 1.2142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22455000 10607000 11848000 15927000 7494400 8432900 0 0 0 3388400 1719800 1668600 3139100 1392900 1746200 0 0 0 0 0 0 27393 1985 28847 144967;144968;144969;144970 145976;145977;145978 145976 3 QIILEKEETEELKR LLPSDTKRSQIYGSRQIILEKEETEELKRF RQIILEKEETEELKRFDDPGLMLMGFKPLV R Q I K R F 0 1 0 0 0 1 5 0 0 2 2 2 0 0 0 0 1 0 0 0 0 0 14 2 1756.9571 P12956;B1AHC9 P12956 326 339 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3;4 2.4278E-09 147.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 3 3 2 2 0.92027 1.0403 17.487 16 Median 0.89975 0.97403 3.569 4 2 Median 0.91774 0.87302 44.769 2 1 Median 0.88544 1.0098 8.6769 3 0 Median 1.1461 1.1768 3.8966 3 1 Median 0.91141 1.074 3.6825 2 0 Median 0.94935 0.97399 31.102 2 0 Median 321550000 160430000 161120000 119000000 60737000 58258000 41012000 19379000 21633000 125890000 62922000 62964000 24038000 11297000 12741000 9184800 4905300 4279500 2433900 1187400 1246500 27394 1985 28848 144971;144972;144973;144974;144975;144976;144977;144978;144979;144980;144981;144982;144983;144984;144985;144986 145979;145980;145981;145982;145983;145984;145985;145986;145987;145988;145989;145990;145991;145992;145993 145983 15 QIIQQNPSLLPALLQQIGR PLEFLRNQPQFQQMRQIIQQNPSLLPALLQ QNPSLLPALLQQIGRENPQLLQQISQHQEH R Q I G R E 1 1 1 0 0 5 0 1 0 3 4 0 0 0 2 1 0 0 0 0 0 0 19 0 2129.2321 P54727 P54727 290 308 RAD23B UV excision repair protein RAD23 homolog B yes yes 2;3 2.8025E-18 127.76 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.74824 0.74331 8.5873 9 Median 0.71211 0.78359 10.512 4 0 Linear 0.90863 0.76386 2.467 2 0 Median 0.67619 0.71355 5.4534 2 0 Median NaN NaN NaN 0 0 Median 0.77231 0.77744 NaN 1 0 Median NaN NaN NaN 0 0 Median 33681000 17405000 16275000 1679600 879400 800200 29343000 14948000 14396000 2342100 1408800 933320 0 0 0 315850 169500 146350 0 0 0 27395 2486 28849 144987;144988;144989;144990;144991;144992;144993;144994;144995 145994;145995;145996;145997;145998;145999;146000;146001;146002 146000 9 QIIVDPLSFSEER GGGGELAYALNNFDKQIIVDPLSFSEERFR DKQIIVDPLSFSEERFRPSLEERLESIISG K Q I E R F 0 1 0 1 0 1 2 0 0 2 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1531.7882 P35221;G3XAM7;H0YBB8 P35221 288 300 CTNNA1 Catenin alpha-1 yes no 2 5.5866E-05 87.298 By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 0.76022 0.77312 61.251 6 Median 0.79486 0.76341 2.5725 2 0 Median 0.2082 0.20118 NaN 1 0 Median 0.71907 0.76885 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94848 0.98666 27.457 2 1 Median NaN NaN NaN 0 0 Median 32322000 17937000 14385000 17962000 9951100 8011200 966950 848550 118410 4422600 2595400 1827200 0 0 0 8969800 4542000 4427700 0 0 0 27396 2232 28850 144996;144997;144998;144999;145000;145001 146003;146004;146005;146006 146005 4 QIKPLLSASSR KGKSKITPAMAARIKQIKPLLSASSRLGRA ARIKQIKPLLSASSRLGRALAELFGLLVKL K Q I S R L 1 1 0 0 0 1 0 0 0 1 2 1 0 0 1 3 0 0 0 0 0 0 11 1 1198.7034 Q7Z6Z7 Q7Z6Z7 1048 1058 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.0019934 44.614 By MS/MS By MS/MS 3 2 0.86373 0.84105 13.233 4 Median 0.73924 0.75643 11.297 2 1 Median 0.96475 0.91011 7.4605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16098000 7491300 8606500 3249200 1681000 1568300 12849000 5810300 7038200 0 0 0 0 0 0 0 0 0 0 0 0 27397 3253 28851 145002;145003;145004;145005;145006 146007;146008;146009 146009 3 QILDEAGK DPSASPGDAGEQAIRQILDEAGKVGELCAG AGEQAIRQILDEAGKVGELCAGKERREILG R Q I G K V 1 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 872.46035 P18206 P18206 301 308 VCL Vinculin yes yes 2 0.0050995 77.741 By MS/MS 1 1.0759 0.91007 NaN 1 Median NaN NaN NaN 0 0 Median 1.0759 0.91007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12008000 5819100 6189000 0 0 0 12008000 5819100 6189000 0 0 0 0 0 0 0 0 0 0 0 0 27398 2057 28852 145007 146010;146011 146011 2 QILDPAASVTGSR TGDSKSIKAFKESPKQILDPAASVTGSRRQ PKQILDPAASVTGSRRQLRTRKEKARALED K Q I S R R 2 1 0 1 0 1 0 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1313.6939 P46013 P46013 2531 2543 MKI67 Antigen KI-67 yes yes 2 8.938E-07 132.25 By matching By MS/MS By matching By matching 1 2 1 1 0.89228 0.79153 30.673 5 Median 1.382 1.3268 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69327 0.74187 32.899 2 0 Median 0.91021 0.79153 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86388 0.71773 NaN 1 0 Median 37799000 21095000 16704000 2732400 979700 1752700 0 0 0 33898000 19520000 14379000 721820 366040 355790 0 0 0 446330 230010 216320 27399 2335 28853 145008;145009;145010;145011;145012 146012;146013;146014 146012 3 QILDPAASVTGSRR TGDSKSIKAFKESPKQILDPAASVTGSRRQ KQILDPAASVTGSRRQLRTRKEKARALEDL K Q I R R Q 2 2 0 1 0 1 0 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 14 1 1469.795 P46013 P46013 2531 2544 MKI67 Antigen KI-67 yes yes 3 0.0067543 39.424 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27400 2335 28854 145013 146015 146015 1 QILDSAASLTGSK TGDGKSMKAFMESPKQILDSAASLTGSKRQ PKQILDSAASLTGSKRQLRTPKGKSEVPED K Q I S K R 2 0 0 1 0 1 0 1 0 1 2 1 0 0 0 3 1 0 0 0 0 0 13 0 1289.6827 P46013 P46013 1682 1694 MKI67 Antigen KI-67 yes yes 2 9.0305E-07 100.72 By MS/MS By MS/MS 1 2 0.84248 0.78109 24.814 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.022 1.0922 NaN 1 0 Median 0.78884 0.72492 10.553 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14661000 7018100 7643300 0 0 0 0 0 0 12944000 6061500 6882400 1717500 956590 760910 0 0 0 0 0 0 27401 2335 28855 145014;145015;145016 146016;146017;146018;146019 146017 4 QILDSAASLTGSKR TGDGKSMKAFMESPKQILDSAASLTGSKRQ KQILDSAASLTGSKRQLRTPKGKSEVPEDL K Q I K R Q 2 1 0 1 0 1 0 1 0 1 2 1 0 0 0 3 1 0 0 0 0 0 14 1 1445.7838 P46013 P46013 1682 1695 MKI67 Antigen KI-67 yes yes 3 7.7643E-05 72.321 By MS/MS 1 1.1525 1.3368 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1525 1.3368 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13386000 5998500 7387500 0 0 0 0 0 0 13386000 5998500 7387500 0 0 0 0 0 0 0 0 0 27402 2335 28856 145017 146020 146020 1 QILENELQIPVSK VDVVLEDTCTVGEIKQILENELQIPVSKML IKQILENELQIPVSKMLLKGWKTGDVEDST K Q I S K M 0 0 1 0 0 2 2 0 0 2 2 1 0 0 1 1 0 0 0 1 0 0 13 0 1509.8403 Q9UNN5;B1ANM7 Q9UNN5 127 139 FAF1 FAS-associated factor 1 yes no 2 0.0076571 55.806 By MS/MS 2 0.82966 0.77373 3.0659 2 Median 0.82966 0.77373 3.0659 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11503000 6176700 5326700 11503000 6176700 5326700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27403 575 28857 145018;145019 146021;146022 146022 2 QILGVIDK HPATGTGAVQTEAMKQILGVIDKKLRNLEK VQTEAMKQILGVIDKKLRNLEKKKGKLDDY K Q I D K K 0 0 0 1 0 1 0 1 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 884.53312 Q14444;E9PLA9 Q14444 56 63 CAPRIN1 Caprin-1 yes no 2 0.023904 43.808 By matching By MS/MS By matching By matching 1 2 1 1 1.0741 1.0181 18.091 5 Median 1.2997 1.2757 NaN 1 0 Median 0.97451 0.86849 11.043 2 0 Median 0.97978 1.0181 NaN 1 0 Median 1.3286 1.1627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9374300 4883600 4490700 2278900 1295100 983780 5553700 2790500 2763200 1087500 582030 505490 454150 215940 238210 0 0 0 0 0 0 27404 2878 28858 145020;145021;145022;145023;145024 146023;146024 146024 2 QILGVIDKK HPATGTGAVQTEAMKQILGVIDKKLRNLEK QTEAMKQILGVIDKKLRNLEKKKGKLDDYQ K Q I K K L 0 0 0 1 0 1 0 1 0 2 1 2 0 0 0 0 0 0 0 1 0 0 9 1 1012.6281 Q14444;E9PLA9 Q14444 56 64 CAPRIN1 Caprin-1 yes no 2 0.010773 51.066 By MS/MS By MS/MS By matching By matching 1 2 2 1 1.2483 1.2387 26.317 6 Median 1.9309 1.9904 NaN 1 0 Median 1.0864 1.0309 3.5122 2 0 Median 1.342 1.45 15.561 2 0 Median 1.2293 1.1813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20719000 8962700 11756000 4987800 1947600 3040100 11994000 5575400 6419000 2653200 1120300 1532900 1083400 319410 764010 0 0 0 0 0 0 27405 2878 28859 145025;145026;145027;145028;145029;145030 146025;146026;146027 146027 3 QILLYSATFPLSVQK VQIMEDIILTLPKNRQILLYSATFPLSVQK QILLYSATFPLSVQKFMNSHLQKPYEINLM R Q I Q K F 1 0 0 0 0 2 0 0 0 1 3 1 0 1 1 2 1 0 1 1 0 0 15 0 1706.9607 P26196 P26196 272 286 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.00035469 57.492 By MS/MS 1 0.67245 0.68323 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67245 0.68323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3769500 1906100 1863400 0 0 0 0 0 0 3769500 1906100 1863400 0 0 0 0 0 0 0 0 0 27406 2140 28860 145031 146028;146029 146028 2 QILMASGSTTFTK RVDDESMQRFHNRVRQILMASGSTTFTKIV VRQILMASGSTTFTKIVNKWNTALIGLMTY R Q I T K I 1 0 0 0 0 1 0 1 0 1 1 1 1 1 0 2 3 0 0 0 0 0 13 0 1383.7068 Q6P2Q9 Q6P2Q9 1246 1258 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 9.7404E-07 118.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 2 1.2577 1.1307 8.3349 8 Median 1.2816 1.2404 NaN 1 0 Median 1.2076 1.0709 NaN 1 0 Median 1.0127 1.1148 NaN 1 0 Median 1.2678 1.1478 0.12599 2 0 Median 0.93247 0.97622 NaN 1 0 Median 1.3384 1.1372 12.503 2 0 Median 50225000 24487000 25739000 9068000 4275600 4792500 4888800 2373500 2515200 24681000 12242000 12439000 4094400 1781000 2313400 6497100 3390600 3106500 996160 423650 572510 27407 3157 28861;28862 145032;145033;145034;145035;145036;145037;145038;145039 146030;146031;146032;146033;146034;146035;146036;146037 146030 1677 8 QILNFFHHR EGPLKEQEWNTTNAKQILNFFHHRCN____ NTTNAKQILNFFHHRCN_____________ K Q I H R C 0 1 1 0 0 1 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 9 0 1210.636 A6NDU8 A6NDU8 284 292 C5orf51 UPF0600 protein C5orf51 yes yes 3 0.0051242 40.352 By MS/MS By matching By matching 1 1 1 1.4949 1.3088 17.484 3 Median 1.1571 1.1093 NaN 1 0 Median 1.4949 1.3088 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7156 1.5734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5530600 2649900 2880700 3189600 1734800 1454800 1994200 796200 1198000 0 0 0 346770 118860 227900 0 0 0 0 0 0 27408 507 28863 145040;145041;145042 146038 146038 1 QILSADLR LEEARRRFKDHVEGKQILSADLRSPVYLTV KDHVEGKQILSADLRSPVYLTVLKHGDGTT K Q I L R S 1 1 0 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 8 0 914.51853 E9PLK3;P55786 E9PLK3 733 740 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.0052175 77.058 By MS/MS By MS/MS 1 1 1.1735 1.072 7.4498 2 Median 1.0539 1.017 NaN 1 0 Median 1.3067 1.13 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29051000 12230000 16821000 7953700 3542500 4411100 21097000 8687600 12410000 0 0 0 0 0 0 0 0 0 0 0 0 27409 960 28864 145043;145044 146039;146040;146041 146040 3 QILVGDIGDTVEDPYTSFVK CLSDDKRQIIVEEAKQILVGDIGDTVEDPY DIGDTVEDPYTSFVKLLPLNDCRYALYDAT K Q I V K L 0 0 0 3 0 1 1 2 0 2 1 1 0 1 1 1 2 0 1 3 0 0 20 0 2195.0998 Q9Y281 Q9Y281 54 73 CFL2 Cofilin-2 yes yes 2 8.5808E-07 53.252 By matching By MS/MS 1 1 1.0218 0.92457 11.292 2 Median 1.0616 1.0014 NaN 1 0 Median 0.98352 0.85362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1714100 810210 903930 327580 139160 188430 1386600 671050 715500 0 0 0 0 0 0 0 0 0 0 0 0 27410 4378 28865 145045;145046 146042;146043 146043 2 QIMENAEINNIIK PLRGKILNVREASHKQIMENAEINNIIKIV HKQIMENAEINNIIKIVGLQYKKNYEDEDS K Q I I K I 1 0 3 0 0 1 2 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 13 0 1528.7919 P11388;Q02880;E9PCY5 P11388 500 512 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 8.6406E-07 101.38 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 3 2 0.84682 0.8865 29.74 11 Median 0.99189 0.92216 NaN 1 0 Median 1.1544 0.99662 NaN 1 0 Median 0.83564 0.92141 4.27 2 1 Median 1.1344 0.97699 53.68 2 0 Median 0.8402 0.87997 20.089 3 1 Median 0.72638 0.61405 45.195 2 0 Median 72676000 37793000 34883000 10022000 4850700 5171500 244750 91807 152940 31222000 16011000 15211000 389790 173670 216110 29751000 16193000 13558000 1046100 472450 573630 27411 1963;2704 28866;28867 145047;145048;145049;145050;145051;145052;145053;145054;145055;145056;145057 146044;146045;146046;146047;146048;146049;146050 146046 745 7 QIMHHFIPDLLFAQR KRQTGIQKEDKYKIKQIMHHFIPDLLFAQR QIMHHFIPDLLFAQRGDLSDVEEEEEEEMD K Q I Q R G 1 1 0 1 0 2 0 0 2 2 2 0 1 2 1 0 0 0 0 0 0 0 15 0 1864.977 Q96ST3 Q96ST3 814 828 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.0045074 26.729 By MS/MS 1 0.63798 0.69707 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63798 0.69707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2081200 1293900 787270 0 0 0 0 0 0 2081200 1293900 787270 0 0 0 0 0 0 0 0 0 27412 3737 28868 145058 146051 146051 1 QINDIQLSR AKSGEVLVNVKEHSRQINDIQLSRDMTMFV VKEHSRQINDIQLSRDMTMFVTASKDNTAK R Q I S R D 0 1 1 1 0 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1085.5829 Q13347 Q13347 190 198 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2 0.00078529 98.033 By MS/MS By MS/MS By MS/MS 2 1 1 1.2251 1.0203 19.608 4 Linear 1.1458 1.1041 1.8883 2 0 Median 1.1488 0.95553 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86919 0.72887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33218000 15608000 17610000 25214000 11938000 13276000 7166200 3214900 3951300 0 0 0 838040 454930 383120 0 0 0 0 0 0 27413 2806 28869 145059;145060;145061;145062 146052;146053;146054;146055;146056;146057;146058 146055 7 QINIHNLSAFYDSELFR DTIEVPEKDLVDKARQINIHNLSAFYDSEL NIHNLSAFYDSELFRMNKFSHDLKRKMILQ R Q I F R M 1 1 2 1 0 1 1 0 1 2 2 0 0 2 0 2 0 0 1 0 0 0 17 0 2066.0221 P49736;H0Y8E6 P49736 871 887 MCM2 DNA replication licensing factor MCM2 yes no 2;3 3.8928E-13 153.48 By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 1.0159 0.9681 11.485 9 Median 0.96719 0.95113 9.3344 2 0 Median 1.1673 0.97038 8.7886 3 0 Median 0.83271 0.91276 5.0972 3 0 Median NaN NaN NaN 0 0 Median 1.1772 1.2415 NaN 1 0 Median NaN NaN NaN 0 0 Median 36869000 17613000 19256000 5049800 2610500 2439300 25973000 11682000 14291000 5396800 3100700 2296200 0 0 0 449750 219440 230310 0 0 0 27414 2393 28870 145063;145064;145065;145066;145067;145068;145069;145070;145071 146059;146060;146061;146062;146063;146064;146065;146066 146065 8 QININNPFVFK VYQTYVNAMNDKIRKQININNPFVFKHISN KIRKQININNPFVFKHISNLKSMDHFDDIG K Q I F K H 0 0 3 0 0 1 0 0 0 2 0 1 0 2 1 0 0 0 0 1 0 0 11 0 1332.719 Q9UKF6;G5E9W3 Q9UKF6 296 306 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.036759 29.087 By matching By MS/MS By matching 1 1 1 1.038 0.91936 22.631 3 Median 1.314 1.3326 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86084 0.88449 NaN 1 0 Median 1.038 0.91936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8786100 4485100 4301000 424730 172070 252660 0 0 0 8215500 4247400 3968000 145950 65601 80345 0 0 0 0 0 0 27415 4309 28871 145072;145073;145074 146067;146068 146067 2 QINLSNIR IIVRGQPRGGPPPERQINLSNIRAGNLARR GGPPPERQINLSNIRAGNLARRAAATQPDA R Q I I R A 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 956.54033 Q7KZF4 Q7KZF4 48 55 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0084927 62.659 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.099 0.99373 37.374 4 Median 1.0869 1.0506 NaN 1 0 Median 1.2493 1.0442 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1113 0.9457 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57639 0.48242 NaN 1 0 Median 20039000 9119400 10920000 5975000 2902200 3072800 11182000 4789300 6392900 0 0 0 2615500 1276900 1338700 0 0 0 266600 150960 115650 27416 3214 28872 145075;145076;145077;145078 146069;146070 146069 2 QINVSTDDSEVK QAEVLAEFERRKRARQINVSTDDSEVKACL RARQINVSTDDSEVKACLRALGEPITLFGE R Q I V K A 0 0 1 2 0 1 1 0 0 1 0 1 0 0 0 2 1 0 0 2 0 0 12 0 1333.6361 O43172 O43172 98 109 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.0015768 51.276 By MS/MS 1 0.66949 0.68125 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66949 0.68125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3639300 2237400 1401900 0 0 0 0 0 0 3639300 2237400 1401900 0 0 0 0 0 0 0 0 0 27417 1557 28873 145079 146071 146071 1 QINWTVLYR NAKCESAFLSKRNPRQINWTVLYRRKHKKG SKRNPRQINWTVLYRRKHKKGQSEEIQKKR R Q I Y R R 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 9 0 1191.64 C9JXB8;C9JNW5;P83731 C9JXB8 48 56 RPL24 60S ribosomal protein L24 yes no 2 0.0011181 85.064 By MS/MS By matching By MS/MS By matching 3 1 2 1 1.1391 1.1136 10.322 5 Median 1.0271 1.0342 10.463 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0919 1.1641 12.912 2 0 Median 1.4077 1.1366 NaN 1 0 Median 109540000 62287000 47250000 97364000 56599000 40765000 0 0 0 214070 92989 121080 0 0 0 8719900 4209000 4510900 3239100 1386200 1852900 27418 713 28874 145080;145081;145082;145083;145084;145085;145086 146072;146073;146074;146075 146075 4 QIPPTVDGMLGGYGHISSIDINSSR EDEKQFYSKAKTYWKQIPPTVDGMLGGYGH GGYGHISSIDINSSRKFLQRFLREGPNKTG K Q I S R K 0 1 1 2 0 1 0 4 1 4 1 0 1 0 2 4 1 0 1 1 0 0 25 0 2613.2857 Q9BV86;S4R3J7 Q9BV86 22 46 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 3 0.0094016 18.56 By MS/MS 1 0.88393 0.83375 NaN 1 Median 0.88393 0.83375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2054100 1014800 1039300 2054100 1014800 1039300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27419 3848 28875 145087 146076 146076 1 QIPQATASMK SAAELTCGMIMCLARQIPQATASMKDGKWE MCLARQIPQATASMKDGKWERKKFMGTELN R Q I M K D 2 0 0 0 0 2 0 0 0 1 0 1 1 0 1 1 1 0 0 0 0 0 10 0 1073.5539 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YF78;A0A286YFE1 A0A286YF22 120 129 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0039357 54.982 By MS/MS By MS/MS 1 1 1.1116 1.0075 19.651 2 Median 0.91003 0.87676 NaN 1 0 Median 1.3579 1.1576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6282900 2692000 3590800 2398200 1198100 1200200 3884600 1494000 2390700 0 0 0 0 0 0 0 0 0 0 0 0 27420 351 28876 145088;145089 146077;146078;146079 146078 3 QIQAAYSILSEVQQAVSQGSSDSQILDLSNR EIDLQKMPLGKLSKRQIQAAYSILSEVQQA SQGSSDSQILDLSNRFYTLIPHDFGMKKPP R Q I N R F 3 1 1 2 0 6 1 1 0 3 3 0 0 0 0 7 0 0 1 2 0 0 31 0 3334.6641 P09874 P09874 705 735 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.0067652 21.023 By MS/MS 1 0.9477 1.035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9477 1.035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2027800 973510 1054300 0 0 0 0 0 0 2027800 973510 1054300 0 0 0 0 0 0 0 0 0 27421 1922 28877 145090 146080;146081 146080 2 QIQEEITGNTEALSGR QVVVVQKREGILQSRQIQEEITGNTEALSG IQEEITGNTEALSGRHERDAFDTLFDHAPD R Q I G R H 1 1 1 0 0 2 3 2 0 2 1 0 0 0 0 1 2 0 0 0 0 0 16 0 1744.8592 Q9NVD7;E9PS97 Q9NVD7 229 244 PARVA Alpha-parvin yes no 2 1.0783E-46 220.66 By matching By MS/MS By MS/MS 1 2 1 0.93414 0.86943 14.801 4 Median NaN NaN NaN 0 0 Median 0.9434 0.83223 NaN 1 0 Median 0.94601 0.9802 10.775 2 0 Median 0.85646 0.74496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40679000 20318000 20362000 0 0 0 575190 282540 292650 37315000 18551000 18764000 2788800 1483800 1305000 0 0 0 0 0 0 27422 4127 28878 145091;145092;145093;145094 146082;146083;146084;146085;146086 146083 4 QIQQYMK QESEERPKLFEELGKQIQQYMKIISSFKNK KLFEELGKQIQQYMKIISSFKNKEDQYDHL K Q I M K I 0 0 0 0 0 3 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 7 0 937.46914 P34932 P34932 705 711 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.0026877 118.06 By MS/MS 1 0.95356 0.80666 NaN 1 Median NaN NaN NaN 0 0 Median 0.95356 0.80666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11794000 6594900 5198800 0 0 0 11794000 6594900 5198800 0 0 0 0 0 0 0 0 0 0 0 0 27423 2230 28879 145095 146087;146088 146087 2 QISDGEREELNLTANR LLEMIHSIQNSQDMRQISDGEREELNLTAN ISDGEREELNLTANRLMGRTLTVEVSVETI R Q I N R L 1 2 2 1 0 1 3 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 16 1 1843.9024 O95816 O95816 71 86 BAG2 BAG family molecular chaperone regulator 2 yes yes 3 5.379E-08 83.54 By MS/MS By MS/MS 1 1 0.94792 0.90317 52.404 2 Median 1.2239 1.3083 NaN 1 1 Median 0.73417 0.6235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17807000 8639100 9167900 9753100 3899100 5854000 8053800 4739900 3313900 0 0 0 0 0 0 0 0 0 0 0 0 27424 1795 28880 145096;145097 146089;146090 146090 2 QISNLQQSISDAEQR RVIQRLRSEIDNVKKQISNLQQSISDAEQR QISNLQQSISDAEQRGENALKDAKNKLNDL K Q I Q R G 1 1 1 1 0 4 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 15 0 1715.8438 P04264;CON__P04264 P04264 418 432 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 1.0354E-122 242.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 11 15 13 11 2 0.078901 0.076338 118.13 57 Median 0.098161 0.093019 86.957 13 13 Median 0.17583 0.14799 165.19 9 8 Median 0.056426 0.061502 114.44 11 11 Median 0.049987 0.043536 140.55 11 10 Median 0.050239 0.053098 89.957 11 11 Median 0.038849 0.031279 47.185 2 1 Median 955930000 900910000 55028000 353400000 325440000 27956000 102440000 93476000 8965000 268030000 258270000 9762300 54982000 53031000 1951000 158180000 152160000 6020400 18898000 18525000 373140 + 27425 1848 28881 145098;145099;145100;145101;145102;145103;145104;145105;145106;145107;145108;145109;145110;145111;145112;145113;145114;145115;145116;145117;145118;145119;145120;145121;145122;145123;145124;145125;145126;145127;145128;145129;145130;145131;145132;145133;145134;145135;145136;145137;145138;145139;145140;145141;145142;145143;145144;145145;145146;145147;145148;145149;145150;145151;145152;145153;145154;145155;145156;145157;145158;145159;145160;145161;145162;145163;145164 146091;146092;146093;146094;146095;146096;146097;146098;146099;146100;146101;146102;146103;146104;146105;146106;146107;146108;146109;146110;146111;146112;146113;146114;146115;146116;146117;146118;146119;146120;146121;146122;146123;146124;146125;146126;146127;146128;146129;146130;146131;146132;146133;146134;146135;146136;146137;146138;146139;146140;146141;146142;146143;146144;146145;146146;146147;146148;146149;146150;146151;146152;146153;146154;146155;146156;146157;146158;146159;146160;146161;146162;146163 146103 73 QISNLQQSISDAEQRGENALK RVIQRLRSEIDNVKKQISNLQQSISDAEQR QSISDAEQRGENALKDAKNKLNDLEDALQQ K Q I L K D 2 1 2 1 0 4 2 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 21 1 2328.167 P04264;CON__P04264 P04264 418 438 KRT1 Keratin, type II cytoskeletal 1 yes no 3 1.8435E-12 77.391 By MS/MS By MS/MS By MS/MS 4 1 2 0.067303 0.072141 50.281 6 Median 0.061765 0.063269 63.405 4 4 Median NaN NaN NaN 0 0 Median 0.092745 0.10512 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.071063 0.078154 NaN 1 1 Median NaN NaN NaN 0 0 Median 60685000 58171000 2514500 37036000 35006000 2030400 0 0 0 3870400 3548300 322120 0 0 0 19778000 19617000 161970 0 0 0 + 27426 1848 28882 145165;145166;145167;145168;145169;145170;145171 146164;146165;146166;146167;146168;146169;146170 146170 7 QISNLQQSISDAEQRGENALKDAK RVIQRLRSEIDNVKKQISNLQQSISDAEQR SDAEQRGENALKDAKNKLNDLEDALQQAKE K Q I A K N 3 1 2 2 0 4 2 1 0 2 2 2 0 0 0 3 0 0 0 0 0 0 24 2 2642.326 P04264;CON__P04264 P04264 418 441 KRT1 Keratin, type II cytoskeletal 1 yes no 4 9.5715E-15 82.635 By MS/MS 3 0.11339 0.13063 33.746 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.11339 0.13063 33.746 3 3 Median NaN NaN NaN 0 0 Median 20492000 19164000 1328000 0 0 0 0 0 0 0 0 0 0 0 0 20492000 19164000 1328000 0 0 0 + 27427 1848 28883 145172;145173;145174 146171;146172;146173 146173 3 QISQAYEVLSDAK KYHPDKNPNEGEKFKQISQAYEVLSDAKKR FKQISQAYEVLSDAKKRELYDKGGEQAIKE K Q I A K K 2 0 0 1 0 2 1 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 13 0 1450.7304 P31689 P31689 47 59 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 8.3164E-07 131.83 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.1127 0.99995 20.133 6 Median 1.2352 1.1409 NaN 1 0 Median 1.0297 0.87642 NaN 1 0 Median 1.2024 1.1543 NaN 1 0 Median 0.95372 0.85725 NaN 1 0 Median 1.3361 1.2734 NaN 1 0 Median 0.92058 0.77455 NaN 1 0 Median 67139000 30451000 36689000 19677000 8889200 10787000 4966800 2357600 2609200 26534000 11624000 14910000 10348000 5178500 5169100 4173300 1732200 2441200 1441000 668910 772120 27428 2204 28884 145175;145176;145177;145178;145179;145180 146174;146175;146176;146177;146178;146179 146176 6 QISQMADDTVAELDR SKDTVSEDTIRLIEKQISQMADDTVAELDR QISQMADDTVAELDRHLAVKTKELLG____ K Q I D R H 2 1 0 3 0 2 1 0 0 1 1 0 1 0 0 1 1 0 0 1 0 0 15 0 1690.7832 Q96E11 Q96E11 237 251 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 0.00019516 74.76 By MS/MS By matching 1 1 1.4507 1.2908 39.338 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0173 0.97739 NaN 1 0 Median 2.0686 1.7048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12874000 4338600 8535500 0 0 0 0 0 0 12205000 4130000 8075000 669060 208560 460500 0 0 0 0 0 0 27429 3631 28885 145181;145182 146180;146181 146180 2 QISRPSAAGINLMIGSTR SQLDPVNERMLNMIRQISRPSAAGINLMIG RPSAAGINLMIGSTRYGDGPRPPKMARYDN R Q I T R Y 2 2 1 0 0 1 0 2 0 3 1 0 1 0 1 3 1 0 0 0 0 0 18 1 1871.0047 Q08211 Q08211 1137 1154 DHX9 ATP-dependent RNA helicase A yes yes 2;3 2.9503E-18 171.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 5 2 9 1 1.0811 1.2208 37.532 20 Median 1.4357 1.5776 9.9513 2 1 Median 1.3424 1.2942 NaN 1 0 Median 0.97702 1.1883 10.125 5 0 Median 1.3034 1.276 13.936 2 0 Median 1.1077 1.1983 17.824 9 5 Median 0.26394 0.27079 NaN 1 0 Median 364750000 175650000 189100000 13176000 5924600 7251700 4965800 2004700 2961100 267520000 131460000 136060000 2115000 835970 1279000 76568000 35116000 41452000 401620 310330 91285 27430 2736 28886;28887 145183;145184;145185;145186;145187;145188;145189;145190;145191;145192;145193;145194;145195;145196;145197;145198;145199;145200;145201;145202 146182;146183;146184;146185;146186;146187;146188;146189;146190;146191;146192;146193;146194;146195;146196;146197;146198;146199;146200;146201;146202 146185 1426 21 QISSFVSEISDEFK LLKTGSESSVDRLMKQISSFVSEISDEFKV KQISSFVSEISDEFKVVVVQAISALCQKYP K Q I F K V 0 0 0 1 0 1 2 0 0 2 0 1 0 2 0 4 0 0 0 1 0 0 14 0 1614.7777 Q9UBF2 Q9UBF2 363 376 COPG2 Coatomer subunit gamma-2 yes yes 2 0.0097685 34.378 By MS/MS By matching 1 1 1.2339 1.1659 19.901 2 Median NaN NaN NaN 0 0 Median 1.1406 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3348 1.3421 NaN 1 0 Median NaN NaN NaN 0 0 Median 2208700 1023100 1185600 0 0 0 1586200 745640 840610 0 0 0 0 0 0 622450 277460 344990 0 0 0 27431 4238 28888 145203;145204 146203 146203 1 QISSLRDEVEAK AVEQQIQSHRETHQKQISSLRDEVEAKAKL HQKQISSLRDEVEAKAKLITDLQDQNQKMM K Q I A K A 1 1 0 1 0 1 2 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 12 1 1373.7151 P33176 P33176 715 726 KIF5B Kinesin-1 heavy chain yes yes 2;3 1.6222E-05 123.63 By MS/MS By MS/MS 2 3 1.0365 1.0008 6.4366 4 Median 0.91302 0.95007 9.3623 2 0 Median 1.1176 1.0041 2.4593 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22581000 11203000 11379000 9620400 4946600 4673800 12961000 6256200 6704800 0 0 0 0 0 0 0 0 0 0 0 0 27432 2221 28889 145205;145206;145207;145208;145209 146204;146205;146206;146207;146208 146206 5 QISVGFIGYPNVGK IQLLRQFGKLHTDKKQISVGFIGYPNVGKS KQISVGFIGYPNVGKSSVINTLRSKKVCNV K Q I G K S 0 0 1 0 0 1 0 3 0 2 0 1 0 1 1 1 0 0 1 2 0 0 14 0 1477.7929 Q13823;H0YG10 Q13823 310 323 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.0025579 42.336 By MS/MS 2 0.70102 0.73135 32.096 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70102 0.73135 32.096 2 0 Median NaN NaN NaN 0 0 Median 3494500 1524300 1970200 0 0 0 0 0 0 0 0 0 0 0 0 3494500 1524300 1970200 0 0 0 27433 2839 28890 145210;145211 146209;146210 146209 2 QITIEEGEQR IIMLVGNKTDLADKRQITIEEGEQRAKELS LADKRQITIEEGEQRAKELSVMFIETSAKT R Q I Q R A 0 1 0 0 0 2 3 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1201.5939 Q9NRW1;J3KR73 Q9NRW1 135 144 RAB6B Ras-related protein Rab-6B yes no 2 0.0040128 68.735 By MS/MS 1 1.2043 1.1358 NaN 1 Median 1.2043 1.1358 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3197500 1146400 2051000 3197500 1146400 2051000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27434 4089 28891 145212 146211 146211 1 QITIIDSPSFIVSPLNSSSALALR SMGLTRSMQVVPLDKQITIIDSPSFIVSPL FIVSPLNSSSALALRSPASIEVVKPMEAAS K Q I L R S 2 1 1 1 0 1 0 0 0 4 3 0 0 1 2 6 1 0 0 1 0 0 24 0 2528.385 Q9BVP2 Q9BVP2 300 323 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 3 0.063612 6.3637 By MS/MS 1 0.7389 0.74695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7389 0.74695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1237800 630470 607300 0 0 0 0 0 0 0 0 0 0 0 0 1237800 630470 607300 0 0 0 27435 3858 28892 145213 146212 146212 1 QITLNDLPVGR TLRGLFIIDDKGILRQITLNDLPVGRSVDE GILRQITLNDLPVGRSVDETLRLVQAFQYT R Q I G R S 0 1 1 1 0 1 0 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1224.6826 Q13162;H7C3T4 Q13162 213 223 PRDX4 Peroxiredoxin-4 yes no 2 0.00011332 127.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 1 1 1 1 1.0696 1.0104 32.143 11 Median 1.0511 1.018 4.3783 2 0 Median 1.0524 0.91854 38.199 5 0 Median 1.0606 1.0184 NaN 1 0 Median 1.2602 1.0392 NaN 1 0 Median 1.3374 1.3429 NaN 1 0 Median 1.2898 1.0104 NaN 1 0 Median 1115600000 540860000 574780000 987340000 482870000 504470000 83417000 37683000 45734000 32356000 15071000 17285000 763980 337300 426680 9372100 3632200 5739900 2389200 1264100 1125100 27436 2793 28893 145214;145215;145216;145217;145218;145219;145220;145221;145222;145223;145224 146213;146214;146215;146216;146217;146218;146219;146220;146221;146222;146223;146224;146225;146226;146227;146228;146229;146230;146231;146232 146213 20 QITMEELVR PLSDARKLTFRGLRKQITMEELVRSQVMDE FRGLRKQITMEELVRSQVMDEATALQLREG K Q I V R S 0 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1117.5801 Q15149;H0YDN1 Q15149 4028 4036 PLEC Plectin yes no 2 0.023564 38.086 By matching By MS/MS 1 1 1.1817 1.1612 8.092 2 Median NaN NaN NaN 0 0 Median 1.3821 1.2296 NaN 1 0 Median 1.0104 1.0966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4086400 1811200 2275200 0 0 0 199480 67719 131760 3886900 1743400 2143400 0 0 0 0 0 0 0 0 0 27437 2933 28894 145225;145226 146233 146233 1 QITQLLPEDLRK IPKEEKHRREEEAMKQITQLLPEDLRKELY AMKQITQLLPEDLRKELYELWEEYETQSSA K Q I R K E 0 1 0 1 0 2 1 0 0 1 3 1 0 0 1 0 1 0 0 0 0 0 12 1 1452.83 Q7Z4H3 Q7Z4H3 108 119 HDDC2 HD domain-containing protein 2 yes yes 3 1.1557E-06 101.89 By MS/MS By matching 1 1 1.0832 1.0737 21.457 2 Median 0.88364 0.92257 NaN 1 0 Median 1.3278 1.2496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15121000 7937200 7183500 14355000 7589900 6765400 765330 347310 418020 0 0 0 0 0 0 0 0 0 0 0 0 27438 3245 28895 145227;145228 146234;146235 146235 2 QITQSALLAEAR YDVLRGIFTSEIGTKQITQSALLAEARSDY GTKQITQSALLAEARSDYSEAAKQYDEALN K Q I A R S 3 1 0 0 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1299.7147 P78527 P78527 2951 2962 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.2056E-09 171.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 2 1.1236 1.0982 24.296 15 Median 0.97753 0.94076 20.053 3 0 Median 1.3182 1.1374 45.12 2 0 Median 1.0866 1.1843 13.799 3 0 Median 1.4235 1.2409 32.227 3 0 Median 1.0665 1.1101 9.7132 2 0 Median 1.1344 0.93609 29.713 2 1 Median 350070000 174300000 175770000 117880000 59111000 58769000 5432200 2136600 3295600 187550000 95138000 92414000 18906000 8206000 10700000 17454000 8485900 8967700 2849800 1225700 1624100 27439 2647 28896 145229;145230;145231;145232;145233;145234;145235;145236;145237;145238;145239;145240;145241;145242;145243 146236;146237;146238;146239;146240;146241;146242;146243;146244;146245;146246;146247;146248;146249;146250;146251;146252;146253;146254 146236 19 QITVNDLPVGR SFRGLFIIDDKGILRQITVNDLPVGRSVDE GILRQITVNDLPVGRSVDETLRLVQAFQFT R Q I G R S 0 1 1 1 0 1 0 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1210.667 Q06830;A0A0A0MSI0;A0A0A0MRQ5;P32119 Q06830 141 151 PRDX1;PRDX2 Peroxiredoxin-1;Peroxiredoxin-2 no no 2;3 0.00011332 127.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 2 1 3 1.0925 0.92532 33.371 15 Median 1.0649 1.0255 45.19 6 0 Median 1.0925 0.92532 13.7 3 0 Plateau 0.89777 0.87916 28.592 2 0 Median 1.0945 0.91207 NaN 1 0 Median 1.4807 1.4985 26.203 3 0 Plateau NaN NaN NaN 0 0 Median 3524900000 1689200000 1835800000 2722900000 1320400000 1402500000 533030000 244470000 288570000 201630000 94914000 106710000 18096000 8718600 9377800 49224000 20634000 28590000 0 0 0 27440 2728;2215 28897 145244;145245;145246;145247;145248;145249;145250;145251;145252;145253;145254;145255;145256;145257;145258 146255;146256;146257;146258;146259;146260;146261;146262;146263;146264;146265;146266;146267;146268;146269;146270;146271;146272;146273;146274;146275;146276;146277;146278 146269 24 QIVGTPVNSEDSDTR QTEKKDSKIVPGNEKQIVGTPVNSEDSDTR QIVGTPVNSEDSDTRQTSHLQARSLSEINK K Q I T R Q 0 1 1 2 0 1 1 1 0 1 0 0 0 0 1 2 2 0 0 2 0 0 15 0 1616.7642 Q5QJE6;J3KP30 Q5QJE6 228 242 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 6.6985E-10 140.39 By MS/MS 2 0.80074 0.8175 15.499 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80074 0.8175 15.499 2 0 Median NaN NaN NaN 0 0 Median 9281500 4859900 4421600 0 0 0 0 0 0 0 0 0 0 0 0 9281500 4859900 4421600 0 0 0 27441 3067 28898 145259;145260 146279;146280 146280 2 QIVLTGILEQVVNCR VRLSQLEGVNVERYKQIVLTGILEQVVNCR QIVLTGILEQVVNCRDALAQEYLMECIIQV K Q I C R D 0 1 1 0 1 2 1 1 0 2 2 0 0 0 0 0 1 0 0 3 0 0 15 0 1740.9556 Q96QK1 Q96QK1 240 254 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.00012752 78.908 By MS/MS 1 1.2223 1.0772 NaN 1 Median NaN NaN NaN 0 0 Median 1.2223 1.0772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1385900 592790 793080 0 0 0 1385900 592790 793080 0 0 0 0 0 0 0 0 0 0 0 0 27442 3722 28899 145261 146281 146281 1 QIVTAGLGDHLAR PKMQPPTESQVTYLRQIVTAGLGDHLARRV LRQIVTAGLGDHLARRVQSEEMLEDKWRNA R Q I A R R 2 1 0 1 0 1 0 2 1 1 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1349.7415 Q8IY37;F5H3Y4 Q8IY37 927 939 DHX37 Probable ATP-dependent RNA helicase DHX37 yes no 3 0.00022532 64.224 By MS/MS 1 1.2262 1.3486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2262 1.3486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6842900 3913500 2929400 0 0 0 0 0 0 6842900 3913500 2929400 0 0 0 0 0 0 0 0 0 27443 3336 28900 145262 146282 146282 1 QIVWNGPVGVFEWEAFAR PESSKKYAEAVTRAKQIVWNGPVGVFEWEA WNGPVGVFEWEAFARGTKALMDEVVKATSR K Q I A R G 2 1 1 0 0 1 2 2 0 1 0 0 0 2 1 0 0 2 0 3 0 0 18 0 2104.053 P00558 P00558 333 350 PGK1 Phosphoglycerate kinase 1 yes yes 2 6.9128E-07 85.258 By MS/MS 2 1.1951 1.0517 14.885 2 Median NaN NaN NaN 0 0 Median 1.1951 1.0517 14.885 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5934400 2775100 3159300 0 0 0 5934400 2775100 3159300 0 0 0 0 0 0 0 0 0 0 0 0 27444 1824 28901 145263;145264 146283;146284 146284 2 QIWQQYFAAK FNIEMVKEKTAEEIKQIWQQYFAAKDTVYA AEEIKQIWQQYFAAKDTVYAVIPAEKFDLI K Q I A K D 2 0 0 0 0 3 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 10 0 1281.6506 H0YEW4;A8MRA7;I3L448;Q5TC12 H0YEW4 77 86 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 yes no 2 0.022594 36.395 By MS/MS By matching 1 1 0.98953 0.90053 17.09 2 Median 1.0851 1.0162 NaN 1 0 Median 0.90235 0.79803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7837200 3864600 3972700 7299600 3546500 3753100 537630 318070 219560 0 0 0 0 0 0 0 0 0 0 0 0 27445 540 28902 145265;145266 146285 146285 1 QIYIYNEK PGRSSLDNIEMAYARQIYIYNEKIVNGHLQ IEMAYARQIYIYNEKIVNGHLQPNLVDLCA R Q I E K I 0 0 1 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 2 0 0 0 8 0 1069.5444 Q8N1F7;H3BVG0;H3BP95;H3BMX0 Q8N1F7 188 195 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.0057517 74.127 By MS/MS 1 1.0986 1.2014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0986 1.2014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9018500 4382400 4636100 0 0 0 0 0 0 9018500 4382400 4636100 0 0 0 0 0 0 0 0 0 27446 3356 28903 145267 146286;146287 146287 2 QIYLSENPEETAAR KDHEEWICTINNISKQIYLSENPEETAARV KQIYLSENPEETAARVNQSALEAVTPSPSF K Q I A R V 2 1 1 0 0 1 3 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 14 0 1619.7791 Q9UKG1 Q9UKG1 376 389 APPL1 DCC-interacting protein 13-alpha yes yes 2 0.00073675 62.408 By MS/MS 1 0.71925 0.69782 NaN 1 Median 0.71925 0.69782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3427400 1541900 1885500 3427400 1541900 1885500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27447 4310 28904 145268 146288 146288 1 QIYPPINVLPSLSR ITEGQIYVDRQLHNRQIYPPINVLPSLSRL RQIYPPINVLPSLSRLMKSAIGEGMTRKDH R Q I S R L 0 1 1 0 0 1 0 0 0 2 2 0 0 0 3 2 0 0 1 1 0 0 14 0 1595.9035 P21281;C9JL73;P15313 P21281 387 400 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 2 0.0005061 68.551 By MS/MS By matching By matching 2 1 1 0.61208 0.62132 21.24 4 Median 0.52831 0.51125 28.661 2 0 Median 0.75238 0.66425 NaN 1 0 Median 0.59695 0.61657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4438700 2724900 1713800 3345100 2044300 1300800 487270 329710 157560 606320 350870 255460 0 0 0 0 0 0 0 0 0 27448 2086 28905 145269;145270;145271;145272 146289;146290;146291 146289 3 QIYYSDKYDDEEFEYR ______________________________ IYYSDKYDDEEFEYRHVMLPKDIAKLVPKT K Q I Y R H 0 1 0 3 0 1 3 0 0 1 0 1 0 1 0 1 0 0 4 0 0 0 16 1 2161.9116 P61024;Q5T179 P61024 5 20 CKS1B Cyclin-dependent kinases regulatory subunit 1;Cyclin-dependent kinases regulatory subunit yes no 3 4.2585E-05 53.777 By MS/MS 1 1.0477 1.0917 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0477 1.0917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3720000 1801000 1919100 0 0 0 0 0 0 3720000 1801000 1919100 0 0 0 0 0 0 0 0 0 27449 2539 28906 145273 146292 146292 1 QKAQVEQELTTLR AEMEKHKKFAEQTLRQKAQVEQELTTLRLQ LRQKAQVEQELTTLRLQLEETDHQKNLLDE R Q K L R L 1 1 0 0 0 3 2 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 13 1 1542.8366 Q15149 Q15149 2317 2329 PLEC Plectin yes yes 2;3 0.0051476 59.542 By MS/MS By matching By matching 3 1 1 0.86059 0.89454 26.375 5 Median 0.86059 0.89454 27.491 3 0 Median 1.2122 1.1089 NaN 1 0 Median 0.58253 0.67344 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26051000 13143000 12908000 22783000 11667000 11116000 732880 258380 474500 2535100 1218200 1316900 0 0 0 0 0 0 0 0 0 27450 2933 28907 145274;145275;145276;145277;145278 146293;146294 146294 2 QKDFLDGVYAFEYYPSTPGR GVTMKGPKGLEELVKQKDFLDGVYAFEYYP DGVYAFEYYPSTPGRYSIAITWGGHHIPKS K Q K G R Y 1 1 0 2 0 1 1 2 0 0 1 1 0 2 2 1 1 0 3 1 0 0 20 1 2352.1063 O75369;E7EN95 O75369 503 522 FLNB Filamin-B yes no 3 0.010003 22.01 By MS/MS By MS/MS 1 1 0.89608 0.98384 0.26115 2 Median 0.96791 0.98203 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82958 0.98566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4553300 2411100 2142200 3283100 1656800 1626200 0 0 0 1270200 754250 515990 0 0 0 0 0 0 0 0 0 27451 1664 28908 145279;145280 146295;146296;146297 146297 3 QKEFDPTITDASLSLPSR REERRQKRLQEALERQKEFDPTITDASLSL FDPTITDASLSLPSRRMQNDTAENETTEKE R Q K S R R 1 1 0 2 0 1 1 0 0 1 2 1 0 1 2 3 2 0 0 0 0 0 18 1 2004.0164 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 112 129 CALD1 Caldesmon yes no 3 6.4296E-09 76.378 By MS/MS 2 0.69542 0.73906 3.1514 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69542 0.73906 3.1514 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26767000 15695000 11072000 0 0 0 0 0 0 26767000 15695000 11072000 0 0 0 0 0 0 0 0 0 27452 928 28909 145281;145282 146298;146299 146298 2 QKEVITAQDTVIK KNKESVNKAQEEVTKQKEVITAQDTVIKAK TKQKEVITAQDTVIKAKYAEVAKHKEQNND K Q K I K A 1 0 0 1 0 2 1 0 0 2 0 2 0 0 0 0 2 0 0 2 0 0 13 1 1471.8246 O95347 O95347 878 890 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 0.0035421 35.657 By MS/MS 1 0.91055 1.0445 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91055 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4759600 2467800 2291800 0 0 0 0 0 0 4759600 2467800 2291800 0 0 0 0 0 0 0 0 0 27453 1766 28910 145283 146300;146301 146301 2 QKFDEIFSATR QEDSNWPLSEGKALKQKFDEIFSATRYIKA KALKQKFDEIFSATRYIKALETLRQVRQTQ K Q K T R Y 1 1 0 1 0 1 1 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 11 1 1340.6725 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7;C9JNH8 Q92878 174 184 RAD50 DNA repair protein RAD50 yes no 3 0.0037968 37.995 By MS/MS 1 1.0631 1.2048 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0631 1.2048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9821000 4816900 5004100 0 0 0 0 0 0 9821000 4816900 5004100 0 0 0 0 0 0 0 0 0 27454 3561 28911 145284 146302;146303 146303 2 QKGADFLVTEVENGGSLGSK SKIYVDDGLISLQVKQKGADFLVTEVENGG FLVTEVENGGSLGSKKGVNLPGAAVDLPAV K Q K S K K 1 0 1 1 0 1 2 4 0 0 2 2 0 1 0 2 1 0 0 2 0 0 20 1 2035.0222 H3BTN5;H3BQ34;P14618;B4DNK4 P14618 187 206 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3 1.7094E-19 118.96 By MS/MS By matching 3 2 0.95344 0.91453 31.424 5 Median 1.1991 1.1151 14.452 3 0 Plateau 0.74174 0.69741 36.111 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56381000 26935000 29446000 52069000 24438000 27631000 4312000 2497300 1814700 0 0 0 0 0 0 0 0 0 0 0 0 27455 2005;1237 28912 145285;145286;145287;145288;145289 146304;146305;146306;146307 146307 4 QKGTEGMEPEEGVTVESQPQVK PLEDTVLSPTKKRKRQKGTEGMEPEEGVTV EPEEGVTVESQPQVKVEPLEEAIPLPPTKK R Q K V K V 0 0 0 0 0 3 5 3 0 0 0 2 1 0 2 1 2 0 0 3 0 0 22 1 2386.1322 O15446 O15446 293 314 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 3 0.011099 20.256 By MS/MS 1 0.59441 0.66988 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59441 0.66988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4566400 2421800 2144600 0 0 0 0 0 0 4566400 2421800 2144600 0 0 0 0 0 0 0 0 0 27456 1548 28913 145290 146308 146308 1 QKGYEEEIIHFKK NIDNIKRNHNLALGRQKGYEEEIIHFKKEL GRQKGYEEEIIHFKKELREPQFRDAEEKYR R Q K K K E 0 0 0 0 0 1 3 1 1 2 0 3 0 1 0 0 0 0 1 0 0 0 13 2 1647.8621 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1078 1090 RAD50 DNA repair protein RAD50 yes no 4 0.033207 20.106 By MS/MS 1 1.0384 1.2478 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0384 1.2478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10149000 5184300 4964700 0 0 0 0 0 0 10149000 5184300 4964700 0 0 0 0 0 0 0 0 0 27457 3561 28914 145291 146309;146310 146310 2 QKHQEYLNSILQHAK KLEKQQKIEQERKRRQKHQEYLNSILQHAK QKHQEYLNSILQHAKDFKEYHRSVTGKIQK R Q K A K D 1 0 1 0 0 3 1 0 2 1 2 2 0 0 0 1 0 0 1 0 0 0 15 1 1835.9642 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y4C5;A0A2R8YGP5;P51531;F6VDE0;A0A0U1RQZ9 P51532 470 484 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3;4 0.0016631 35.303 By MS/MS By MS/MS 2 1 0.92896 1.0796 28.863 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78878 0.91607 23.227 2 0 Median 1.4754 1.3819 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61969000 31652000 30317000 0 0 0 0 0 0 60285000 30822000 29463000 1684200 829710 854510 0 0 0 0 0 0 27458 366;2433 28915 145292;145293;145294 146311;146312;146313;146314 146313 4 QKHSQAVEELAEQLEQTKR EEEAKTHEAQIQEMRQKHSQAVEELAEQLE QAVEELAEQLEQTKRVKANLEKAKQTLENE R Q K K R V 2 1 0 0 0 4 4 0 1 0 2 2 0 0 0 1 1 0 0 1 0 0 19 2 2251.1557 P35579 P35579 1192 1210 MYH9 Myosin-9 yes yes 4 1.8931E-05 58.024 By MS/MS 1 0.27462 0.29029 NaN 1 Median 0.27462 0.29029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45901000 33965000 11936000 45901000 33965000 11936000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27459 2244 28916 145295 146315 146315 1 QKIHPTSVISGYR IIAAELLKNADELVKQKIHPTSVISGYRLA VKQKIHPTSVISGYRLACKEAVRYINENLI K Q K Y R L 0 1 0 0 0 1 0 1 1 2 0 1 0 0 1 2 1 0 1 1 0 0 13 1 1484.81 P17987;E7ERF2;F5H136;F5H676 P17987 110 122 TCP1 T-complex protein 1 subunit alpha yes no 3 0.00034146 59.871 By MS/MS 1 0.99223 0.99572 NaN 1 Median 0.99223 0.99572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8927200 4505900 4421300 8927200 4505900 4421300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27460 2051 28917 145296 146316 146316 1 QKIVQAEGEAEAAK QRAQFLVEKAKQEQRQKIVQAEGEAEAAKM RQKIVQAEGEAEAAKMLGEALSKNPGYIKL R Q K A K M 4 0 0 0 0 2 3 1 0 1 0 2 0 0 0 0 0 0 0 1 0 0 14 1 1470.7678 J3KPX7;Q99623;F5GY37 J3KPX7 223 236 PHB2 Prohibitin-2 yes no 3 0.064948 12.285 By MS/MS By matching 1 1 1.3162 1.2298 13.961 2 Median 1.1503 1.1142 NaN 1 0 Median 1.5061 1.3574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2397800 1033700 1364100 1426500 659300 767220 971280 374380 596900 0 0 0 0 0 0 0 0 0 0 0 0 27461 1313 28918 145297;145298 146317 146317 1 QKLDILDQER QQLLAHGHYASPEIKQKLDILDQERADLEK SPEIKQKLDILDQERADLEKAWVQRRMMLD K Q K E R A 0 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1256.6725 A0A0D9SF54;Q13813 Q13813 1418 1427 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 0.00011899 101.3 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 1 1.1276 1.1665 18.457 10 Median 1.2003 1.2175 NaN 1 0 Median 1.4558 1.4001 17.772 3 1 Median 0.92274 1.1057 13.719 2 0 Median 0.98559 0.91804 16.331 3 0 Median 1.1281 1.2804 NaN 1 0 Median NaN NaN NaN 0 0 Median 76266000 36091000 40174000 3343300 1786900 1556500 27747000 10788000 16959000 39857000 20853000 19004000 3618900 1782200 1836700 1699600 881630 817960 0 0 0 27462 264;2838 28919 145299;145300;145301;145302;145303;145304;145305;145306;145307;145308 146318;146319;146320;146321;146322;146323;146324;146325;146326;146327 146319 10 QKLDILDQERADLEK QQLLAHGHYASPEIKQKLDILDQERADLEK QKLDILDQERADLEKAWVQRRMMLDQCLEL K Q K E K A 1 1 0 3 0 2 2 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 15 2 1812.9581 A0A0D9SF54;Q13813 Q13813 1418 1432 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.062317 11.901 By MS/MS 1 0.80657 1.0656 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80657 1.0656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10004000 5404200 4600000 0 0 0 0 0 0 10004000 5404200 4600000 0 0 0 0 0 0 0 0 0 27463 264;2838 28920 145309 146328 146328 1 QKLDPAASVTGSK GGEDKSINAFRETAKQKLDPAASVTGSKRH AKQKLDPAASVTGSKRHPKTKEKAQPLEDL K Q K S K R 2 0 0 1 0 1 0 1 0 0 1 2 0 0 1 2 1 0 0 1 0 0 13 1 1300.6987 P46013 P46013 1440 1452 MKI67 Antigen KI-67 yes no 3 0.067481 12.833 By MS/MS 1 1.0135 1.1521 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0135 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1374000 524110 849860 0 0 0 0 0 0 1374000 524110 849860 0 0 0 0 0 0 0 0 0 27464 2335 28921 145310 146329 146329 1 QKLEEDAEMK KVEAKLRAKQEQEAKQKLEEDAEMKSLEEK EQEAKQKLEEDAEMKSLEEKIGCLLKFSGD K Q K M K S 1 0 0 1 0 1 3 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 10 1 1219.5755 P05455 P05455 215 224 SSB Lupus La protein yes yes 2;3 0.016031 56.916 By MS/MS By matching 2 3 1.054 1.0146 9.4981 5 Median 1.054 1.0147 0.01539 2 0 Median 1.0453 0.98306 11.919 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13938000 6790600 7147500 6515900 3124500 3391400 7422200 3666100 3756100 0 0 0 0 0 0 0 0 0 0 0 0 27465 1867 28922 145311;145312;145313;145314;145315 146330;146331 146330 2 QKLNPADAPNPVVFVATK LASGIRSSSQPAAKRQKLNPADAPNPVVFV NPADAPNPVVFVATKDTRALRKALTHLEMR R Q K T K D 3 0 2 1 0 1 0 0 0 0 1 2 0 1 3 0 1 0 0 3 0 0 18 1 1908.0469 O94776 O94776 594 611 MTA2 Metastasis-associated protein MTA2 yes yes 3 0.017162 19.912 By MS/MS By matching 1 1 0.58099 0.64888 5.0633 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6035 0.67253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55932 0.62606 NaN 1 0 Median NaN NaN NaN 0 0 Median 13763000 8661300 5101400 0 0 0 0 0 0 11374000 7209500 4164600 0 0 0 2388600 1451800 936810 0 0 0 27466 1723 28923 145316;145317 146332;146333 146333 2 QKLTAQVEELSK KVKVLEERQRFQEERQKLTAQVEELSKKLA EERQKLTAQVEELSKKLADSDQASKVQQQK R Q K S K K 1 0 0 0 0 2 2 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 12 1 1372.7562 A0A087WY61;K4DIE0 A0A087WY61 1529 1540 NUMA1 no no 2;3 0.00019558 87.298 By MS/MS 2 0.87011 1.0064 3.6894 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87011 1.0064 3.6894 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18435000 8648900 9786300 0 0 0 0 0 0 18435000 8648900 9786300 0 0 0 0 0 0 0 0 0 27467 77 28924 145318;145319 146334;146335 146335 2 QKLTAQVEQLEVFQR KVKVLEERQRFQEERQKLTAQVEQLEVFQR QKLTAQVEQLEVFQREQTKQVEELSKKLAD R Q K Q R E 1 1 0 0 0 4 2 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 15 1 1815.9843 Q14980 Q14980 1531 1545 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 0.00011059 55.841 By MS/MS 1 0.85013 1.0194 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85013 1.0194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6725100 3366400 3358700 0 0 0 0 0 0 6725100 3366400 3358700 0 0 0 0 0 0 0 0 0 27468 2905 28925 145320 146336;146337 146336 2 QKPITPETAEK LRDDPSTIEKLAKNKQKPITPETAEKLARD AKNKQKPITPETAEKLARDLKAVKYVECSA K Q K E K L 1 0 0 0 0 1 2 0 0 1 0 2 0 0 2 0 2 0 0 0 0 0 11 1 1240.6663 P60953;A0A590UJK8 P60953 134 144 CDC42 Cell division control protein 42 homolog yes no 3 0.063342 14.561 By matching By MS/MS By matching 2 1 1 0.82569 0.78325 13.805 4 Median 0.71149 0.72503 7.6195 2 0 Median 0.90688 0.80176 NaN 1 0 Median 0.93578 0.95687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2722500 1492200 1230300 1492500 882300 610200 625570 304850 320710 604440 305090 299350 0 0 0 0 0 0 0 0 0 27469 2532 28926 145321;145322;145323;145324 146338 146338 1 QKPSNTEDFIEDIVK FTASFNRPNLYYEVRQKPSNTEDFIEDIVK QKPSNTEDFIEDIVKLINGRYKGQSGIIYC R Q K V K L 0 0 1 2 0 1 2 0 0 2 0 2 0 1 1 1 1 0 0 1 0 0 15 1 1761.8785 P46063 P46063 292 306 RECQL ATP-dependent DNA helicase Q1 yes yes 3 0.0033509 30.133 By MS/MS By MS/MS 1 1 0.37975 0.39557 117.91 2 Median 0.17683 0.17184 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81555 0.91061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22393000 15726000 6667500 12681000 10818000 1863700 0 0 0 9711700 4907900 4803800 0 0 0 0 0 0 0 0 0 27470 2337 28927 145325;145326 146339;146340 146340 2 QKQNRPIPQWIR SSHKTFKIKQFLAKKQKQNRPIPQWIRMKT AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH K Q K I R M 0 2 1 0 0 3 0 0 0 2 0 1 0 0 2 0 0 1 0 0 0 0 12 2 1562.8794 Q59GN2;P62891 Q59GN2 17 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 3 0.00020111 68.069 By MS/MS By MS/MS 1 1 0.92784 1.001 13.807 2 Median 0.97785 1.1037 NaN 1 0 Median 0.88039 0.90789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17335000 8632100 8702700 7266000 3530800 3735200 10069000 5101200 4967600 0 0 0 0 0 0 0 0 0 0 0 0 27471 2606 28928 145327;145328 146341;146342;146343 146343 3 QKVDLQSLPTR RIVENEKINAEKSSKQKVDLQSLPTRAYLD KSSKQKVDLQSLPTRAYLDQTVVPILLQGL K Q K T R A 0 1 0 1 0 2 0 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 1 1283.7197 Q9C005 Q9C005 44 54 DPY30 Protein dpy-30 homolog yes yes 2;3 0.033952 71.349 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27472 3902 28929 145329;145330 146344;146345 146345 2 QKVDSLLENLEK GDDLQAIKKELTQIKQKVDSLLENLEKIEK QIKQKVDSLLENLEKIEKEQSKQAVEMKND K Q K E K I 0 0 1 1 0 1 2 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 12 1 1414.7668 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1 B2R5W2 192 203 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2;3 0.00034917 69.01 By matching By MS/MS By matching By MS/MS By matching 1 4 2 8 4 0.97263 0.97028 18.459 19 Median 0.82082 0.76839 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94606 1.0043 3.9354 4 0 Median 1.1479 1.0222 15.667 2 0 Median 0.95864 1.0216 25.157 8 0 Median 1.0695 0.94058 9.9905 4 0 Median 219650000 106650000 113000000 2570300 1118900 1451400 0 0 0 43976000 22104000 21872000 3284700 1493400 1791300 146410000 70658000 75752000 23408000 11272000 12137000 27473 582 28930 145331;145332;145333;145334;145335;145336;145337;145338;145339;145340;145341;145342;145343;145344;145345;145346;145347;145348;145349 146346;146347;146348;146349;146350;146351;146352;146353;146354;146355;146356;146357;146358 146352 13 QKVEALSPGDR KYHEKQAQVEATKLKQKVEALSPGDRQQIY TKLKQKVEALSPGDRQQIYEKGLELRSQQS K Q K D R Q 1 1 0 1 0 1 1 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 1 1198.6306 Q5JRX3;A0A0A0MRX9;H0Y4F7 Q5JRX3 524 534 PITRM1 Presequence protease, mitochondrial yes no 2 0.071572 62.823 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27474 3050 28931 145350 146359 146359 1 QKVEGTEPTTAFNLFVGNLNFNK KKEMAKQKAAPEAKKQKVEGTEPTTAFNLF TTAFNLFVGNLNFNKSAPELKTGISDVFAK K Q K N K S 1 0 4 0 0 1 2 2 0 0 2 2 0 3 1 0 3 0 0 2 0 0 23 1 2567.302 P19338 P19338 296 318 NCL Nucleolin yes yes 3 3.1589E-05 36.523 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1.02 1.0628 11.796 9 Median 1.0191 0.97111 8.0175 3 0 Median 1.2887 1.2467 10.364 3 1 Plateau 0.97111 1.1056 5.5833 2 1 Median NaN NaN NaN 0 0 Median 1.1443 1.2821 NaN 1 0 Median NaN NaN NaN 0 0 Median 28122000 13236000 14886000 9490700 4506900 4983800 4066800 1698500 2368400 9491700 4877000 4614700 0 0 0 5072900 2153300 2919600 0 0 0 27475 2063 28932 145351;145352;145353;145354;145355;145356;145357;145358;145359 146360;146361;146362;146363;146364;146365;146366;146367;146368;146369 146361 10 QKVENLFNEK EFSFEAWNAKITDLKQKVENLFNEKCGEAL ITDLKQKVENLFNEKCGEALGLKQAVKVPF K Q K E K C 0 0 2 0 0 1 2 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1247.651 P78347;A0A494C1K3 P78347 735 744 GTF2I General transcription factor II-I yes no 2 0.0058614 83.783 By MS/MS 1 0.74061 0.85086 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74061 0.85086 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5557100 2904400 2652700 0 0 0 0 0 0 5557100 2904400 2652700 0 0 0 0 0 0 0 0 0 27476 2642 28933 145360 146370 146370 1 QLADETLLK DQIAQLEASLAAAKKQLADETLLKVDLENR LAAAKKQLADETLLKVDLENRCQSLTEDLE K Q L L K V 1 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 P20700;E9PBF6;A0A0D9SFE5 P20700 183 191 LMNB1 Lamin-B1 yes no 2 0.0025104 71.501 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 2 1.1753 0.97678 29.617 10 Median NaN NaN NaN 0 0 Median 1.5589 1.3346 NaN 1 0 Median 0.91026 0.90085 NaN 1 0 Median 1.2388 1.0348 26.537 3 0 Median 0.90335 0.91927 48.436 3 0 Median 1.1691 0.97318 23.751 2 0 Median 112460000 55293000 57164000 0 0 0 501920 240760 261160 37534000 18524000 19010000 25684000 11244000 14440000 44292000 23435000 20858000 4445000 1849100 2595800 27477 2084 28934 145361;145362;145363;145364;145365;145366;145367;145368;145369;145370 146371;146372;146373;146374;146375;146376;146377;146378 146372 8 QLADIGYK ______________________________ ______________________________ K Q L Y K T 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 906.48108 Q96I36 Q96I36 6 13 COX14 Cytochrome c oxidase assembly protein COX14 yes yes 2 0.018519 47.849 By MS/MS By matching By matching 2 1 1 1.1819 1.1048 40.008 4 Median 1.1819 1.1048 13.111 2 0 Median NaN NaN NaN 0 0 Median 1.6173 1.8232 NaN 1 0 Median 0.82292 0.69678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11581000 5101300 6479800 4634500 2058900 2575600 0 0 0 3905600 1489500 2416000 3041100 1552900 1488200 0 0 0 0 0 0 27478 3675 28935 145371;145372;145373;145374 146379;146380 146380 2 QLAEDFLK RQTLMWSATWPKEVRQLAEDFLKDYIHINI TWPKEVRQLAEDFLKDYIHINIGALELSAN R Q L L K D 1 0 0 1 0 1 1 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 962.5073 J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 288 295 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.013762 52.403 By MS/MS By matching 2 2 1.2009 1.1329 8.0445 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2004 1.2281 3.947 2 0 Median 1.2233 1.0745 0.017073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38313000 17576000 20737000 0 0 0 0 0 0 21003000 9674700 11328000 17310000 7901300 9408700 0 0 0 0 0 0 27479 1334 28936 145375;145376;145377;145378 146381;146382 146381 2 QLAEDFLR RQTLMWSATWPKEVRQLAEDFLRDYTQINV TWPKEVRQLAEDFLRDYTQINVGNLELSAN R Q L L R D 1 1 0 1 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 990.51345 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 365 372 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0035542 89.142 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 3 3 2 1.1431 1.0313 21.098 15 Median 1.23 1.2053 14.985 2 0 Median 1.6208 1.4006 26.104 3 0 Median 1.0378 1.0557 16.912 2 0 Median 1.1328 0.97584 21.775 3 0 Median 0.888 0.91281 15.66 3 0 Median 1.1692 0.97965 7.2704 2 0 Median 203770000 102120000 101650000 8919600 3865700 5054000 11920000 5008000 6911700 161250000 81957000 79291000 3335600 1440800 1894800 14386000 8034100 6351900 3962500 1818500 2144000 27480 343 28937 145379;145380;145381;145382;145383;145384;145385;145386;145387;145388;145389;145390;145391;145392;145393 146383;146384;146385;146386;146387;146388;146389 146387 7 QLAEEDLAQQR AARLSVAAQEAARLRQLAEEDLAQQRALAE ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R Q L Q R A 2 1 0 1 0 3 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1299.6419 Q15149 Q15149 2432 2442 PLEC Plectin yes yes 2 7.1717E-06 128.6 By MS/MS By MS/MS 1 1 1.3354 1.0682 NaN 1 Median NaN NaN NaN 0 0 Median 1.3354 1.0682 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24955000 9462000 15493000 0 0 0 24955000 9462000 15493000 0 0 0 0 0 0 0 0 0 0 0 0 27481 2933 28938 145394;145395 146390;146391 146390 2 QLAELAISK AYQLAVEAESEQKWKQLAELAISKCQFGLA SEQKWKQLAELAISKCQFGLAQECLHHAQD K Q L S K C 2 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 971.56515 P35606 P35606 672 680 COPB2 Coatomer subunit beta yes yes 2 0.0075799 51.066 By MS/MS 1 1.7487 1.5422 NaN 1 Median NaN NaN NaN 0 0 Median 1.7487 1.5422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2562200 1033200 1529000 0 0 0 2562200 1033200 1529000 0 0 0 0 0 0 0 0 0 0 0 0 27482 2246 28939 145396 146392;146393 146393 2 QLAEQEELER PHKEARQRRKELRKKQLAEQEELERQMKEL ELRKKQLAEQEELERQMKELQAANESKQQE K Q L E R Q 1 1 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1243.6044 Q9UH65;E7EMB1;E9PJM7 Q9UH65 330 339 SWAP70 Switch-associated protein 70 yes no 2 0.00068446 110.87 By MS/MS By MS/MS By matching 1 1 1 0.90275 0.88583 16.484 3 Median 1.1175 1.0832 NaN 1 0 Median 0.90275 0.78124 NaN 1 0 Median 0.81402 0.88583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14250000 7008100 7242000 5519900 2397400 3122500 7073800 3645900 3427900 1656400 964810 691570 0 0 0 0 0 0 0 0 0 27483 4270 28940 145397;145398;145399 146394;146395 146394 2 QLAFQQQLLQMQQLQQQHLLNLQR QQAGKPQPKEALGNKQLAFQQQLLQMQQLQ QMQQLQQQHLLNLQRQGLVSLQPNQASGPL K Q L Q R Q 1 1 1 0 0 11 0 0 1 0 7 0 1 1 0 0 0 0 0 0 0 0 24 0 2974.5923 B7ZBM3;Q8IVH2;A0A590UJX7 B7ZBM3 176 199 FOXP4 Forkhead box protein P4 yes no 3 5.6165E-08 44.105 By MS/MS 1 1.0121 1.0721 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0121 1.0721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3289000 1655600 1633400 0 0 0 0 0 0 3289000 1655600 1633400 0 0 0 0 0 0 0 0 0 27484 640 28941 145400 146396;146397 146397 2 QLAGEDMEISVK LSEEEIDENFKALFRQLAGEDMEISVKELR LFRQLAGEDMEISVKELRTILNRIISKHKD R Q L V K E 1 0 0 1 0 1 2 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1318.6439 P07384 P07384 553 564 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00049285 77.14 By MS/MS 1 0.9521 0.86484 NaN 1 Median 0.9521 0.86484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11133000 5212400 5920800 11133000 5212400 5920800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27485 1886 28942 145401 146398;146399 146399 2 QLAGILQVPLEER ETYGSGTQYHMQLAKQLAGILQVPLEERGG AKQLAGILQVPLEERGGIMSLTEVYCLVNR K Q L E R G 1 1 0 0 0 2 2 1 0 1 3 0 0 0 1 0 0 0 0 1 0 0 13 0 1464.83 Q86VN1;A0A3B3ISW7 Q86VN1 248 260 VPS36 Vacuolar protein-sorting-associated protein 36 yes no 2 0.016991 32.523 By matching By MS/MS 1 1 0.73539 0.77658 10.895 2 Median 0.81871 0.83877 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66055 0.719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2828000 1593400 1234600 685290 366400 318890 0 0 0 2142700 1227000 915660 0 0 0 0 0 0 0 0 0 27486 3287 28943 145402;145403 146400 146400 1 QLAHIYHYYIHGPK EHIQYLKNYFHLWTRQLAHIYHYYIHGPKG RQLAHIYHYYIHGPKGNEIRTSKEVEPFNN R Q L P K G 1 0 0 0 0 1 0 1 3 2 1 1 0 0 1 0 0 0 3 0 0 0 14 0 1738.8944 A6NHR9 A6NHR9 345 358 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 4 0.0034821 32.068 By MS/MS By matching 1 1 0.72061 0.72145 24.68 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77899 0.85901 NaN 1 0 Median 0.66661 0.60592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16036000 9122300 6913400 0 0 0 0 0 0 14642000 8296200 6345900 1393500 826060 567450 0 0 0 0 0 0 27487 518 28944 145404;145405 146401;146402 146402 2 QLALEDAK FLRDHFNKKMYEEFKQLALEDAKEGYRYGL KMYEEFKQLALEDAKEGYRYGLECLFRYYS K Q L A K E 2 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 886.476 Q6PKG0 Q6PKG0 937 944 LARP1 La-related protein 1 yes yes 2 0.04017 36.842 By MS/MS 1 1.1534 0.99787 NaN 1 Median NaN NaN NaN 0 0 Median 1.1534 0.99787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3440000 1576800 1863100 0 0 0 3440000 1576800 1863100 0 0 0 0 0 0 0 0 0 0 0 0 27488 3176 28945 145406 146403;146404 146403 2 QLALETIDINKDPYFMK ASSSESNRDRRERLRQLALETIDINKDPYF ALETIDINKDPYFMKNHLGSYECKLCLTLH R Q L M K N 1 0 1 2 0 1 1 0 0 2 2 2 1 1 1 0 1 0 1 0 0 0 17 1 2038.0445 Q15428;K7EMT0 Q15428 32 48 SF3A2 Splicing factor 3A subunit 2 yes no 3 0.014452 21.841 By MS/MS By matching By MS/MS 1 1 1 0.82164 0.77841 35.654 3 Median 0.82164 0.77841 NaN 1 0 Median 0.68939 0.64522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2057 1.2859 NaN 1 0 Median NaN NaN NaN 0 0 Median 11173000 5807200 5366000 3456900 1814800 1642100 4492600 2395800 2096800 0 0 0 0 0 0 3223600 1596600 1627000 0 0 0 27489 2953 28946 145407;145408;145409 146405;146406 146405 2 QLALWNPK DGNVFTTGFSRMSERQLALWNPKNMQEPIA FSRMSERQLALWNPKNMQEPIALHEMDTSN R Q L P K N 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 8 0 968.54435 Q9ULV4;B4E3S0 Q9ULV4 244 251 CORO1C Coronin-1C;Coronin yes no 2 0.011909 56.011 By matching By matching By MS/MS 1 1 2 0.96986 0.96586 21.48 4 Median NaN NaN NaN 0 0 Median 1.1298 0.99308 NaN 1 0 Median 0.87791 0.97077 NaN 1 0 Median 0.89969 0.78114 29.302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8001200 3351700 4649500 0 0 0 1111700 424510 687180 628610 393200 235410 6260900 2534000 3726900 0 0 0 0 0 0 27490 4329 28947 145410;145411;145412;145413 146407;146408 146407 2 QLANSLSGVQNQLQSFNSYR LLQWIEQTIVTLNDRQLANSLSGVQNQLQS LSGVQNQLQSFNSYRTVEKPPKFTEKGNLE R Q L Y R T 1 1 3 0 0 4 0 1 0 0 3 0 0 1 0 4 0 0 1 1 0 0 20 0 2253.1138 O15020;A4QPE4 O15020 332 351 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 2 0.02418 33.204 By MS/MS 1 1.0375 1.1527 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0375 1.1527 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2487000 1220100 1267000 0 0 0 0 0 0 2487000 1220100 1267000 0 0 0 0 0 0 0 0 0 27491 1512 28948 145414 146409 146409 1 QLAPLLPSLAPSSAR LASRSLSHWRPRPPRQLAPLLPSLAPSSAR QLAPLLPSLAPSSARQGARRAQRHVTAQQP R Q L A R Q 3 1 0 0 0 1 0 0 0 0 4 0 0 0 3 3 0 0 0 0 0 0 15 0 1519.8722 A0A087WUK2;O14979 A0A087WUK2 37 51 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 3.3742E-05 84.658 By MS/MS By matching 2 1 0.61578 0.61778 20.941 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55246 0.54884 16.734 2 0 Median 0.83946 0.74031 NaN 1 0 Median 7597100 4933800 2663200 0 0 0 0 0 0 0 0 0 0 0 0 7355700 4795700 2560000 241380 138180 103200 27492 32 28949 145415;145416;145417 146410;146411 146411 1 QLAQIDGTLSTIEFQR RAALQALKRKKRYEKQLAQIDGTLSTIEFQ LAQIDGTLSTIEFQREALENANTNTEVLKN K Q L Q R E 1 1 0 1 0 3 1 1 0 2 2 0 0 1 0 1 2 0 0 0 0 0 16 0 1818.9476 Q9H444 Q9H444 78 93 CHMP4B Charged multivesicular body protein 4b yes yes 2 6.4162E-05 77.593 By MS/MS 1 1.2011 1.1416 NaN 1 Median 1.2011 1.1416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4464700 1931000 2533700 4464700 1931000 2533700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27493 3961 28950 145418 146412;146413 146412 2 QLASEDISHITPTQGFNIK LLLGLDNAGKTTLLKQLASEDISHITPTQG EDISHITPTQGFNIKSVQSQGFKLNVWDIG K Q L I K S 1 0 1 1 0 2 1 1 1 3 1 1 0 1 1 2 2 0 0 0 0 0 19 0 2098.0695 P36405 P36405 36 54 ARL3 ADP-ribosylation factor-like protein 3 yes yes 3 0.00056306 31.462 By MS/MS By MS/MS By matching 2 1 1 0.57441 0.54227 37.962 4 Median 0.56341 0.53386 43.086 2 0 Median 0.9364 0.81349 NaN 1 0 Median 0.43062 0.40616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38672000 26966000 11706000 35302000 24737000 10565000 1242500 787090 455380 2126800 1441600 685190 0 0 0 0 0 0 0 0 0 27494 2255 28951 145419;145420;145421;145422 146414;146415 146414 2 QLASGLLLVTGPLVLNR ILTGRHRGKRVVFLKQLASGLLLVTGPLVL ASGLLLVTGPLVLNRVPLRRTHQKFVIATS K Q L N R V 1 1 1 0 0 1 0 2 0 0 6 0 0 0 1 1 1 0 0 2 0 0 17 0 1763.0669 Q02878 Q02878 167 183 RPL6 60S ribosomal protein L6 yes yes 2 2.5095E-51 217.09 By MS/MS By MS/MS By MS/MS By matching 3 5 1 1 1.0132 0.97968 18.863 10 Median 1.0942 1.0478 4.8553 3 0 Median 0.82596 0.74065 16.105 5 0 Median 1.0241 0.98212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3694 1.2072 NaN 1 0 Median 26454000 13276000 13179000 8327500 4254200 4073200 16639000 8267500 8371700 1374500 703800 670720 0 0 0 0 0 0 113010 50001 63007 27495 2703 28952 145423;145424;145425;145426;145427;145428;145429;145430;145431;145432 146416;146417;146418;146419;146420;146421;146422;146423 146423 8 QLAVAEGKPPEAPK NEVAAEVAKLLDLKKQLAVAEGKPPEAPKG KQLAVAEGKPPEAPKGKKKK__________ K Q L P K G 3 0 0 0 0 1 2 1 0 0 1 2 0 0 3 0 0 0 0 1 0 0 14 1 1433.7878 P56192;H0YIP0 P56192 882 895 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.005709 28.812 By MS/MS 1 0.80608 0.77943 NaN 1 Median NaN NaN NaN 0 0 Median 0.80608 0.77943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1589300 822650 766620 0 0 0 1589300 822650 766620 0 0 0 0 0 0 0 0 0 0 0 0 27496 2508 28953 145433 146424;146425 146424 2 QLDDEEVSEFALDGLK IGHQALEDILPFLLKQLDDEEVSEFALDGL LDDEEVSEFALDGLKQVMAIKSRVVLPYLV K Q L L K Q 1 0 0 3 0 1 3 1 0 0 3 1 0 1 0 1 0 0 0 1 0 0 16 0 1806.8523 Q92616 Q92616 2051 2066 GCN1L1 Translational activator GCN1 yes yes 2 0.00040045 47.288 By MS/MS 1 0.90498 0.85786 NaN 1 Median 0.90498 0.85786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2427300 1271400 1155900 2427300 1271400 1155900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27497 3544 28954 145434 146426;146427 146427 2 QLDDKDEEINQQSQLVEK AERRKCEEEIAKLYKQLDDKDEEINQQSQL DKDEEINQQSQLVEKLKTQMLDQEELLAST K Q L E K L 0 0 1 3 0 4 3 0 0 1 2 2 0 0 0 1 0 0 0 1 0 0 18 1 2158.039 P33176 P33176 431 448 KIF5B Kinesin-1 heavy chain yes yes 3 1.6092E-06 72.433 By MS/MS By MS/MS By MS/MS 2 2 1 1.2056 1.2625 30.516 5 Median 1.2475 1.3063 4.8244 2 2 Median 1.0691 1.0113 5.8792 2 0 Median 1.8447 2.123 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41808000 18471000 23337000 23796000 10338000 13458000 11375000 5705000 5669800 6637900 2428000 4209900 0 0 0 0 0 0 0 0 0 27498 2221 28955 145435;145436;145437;145438;145439 146428;146429;146430;146431;146432 146431 5 QLDDLKVELSQLR KARDLRGKKKEELLKQLDDLKVELSQLRVA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K Q L L R V 0 1 0 2 0 2 1 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 13 1 1555.857 P42766;F2Z388 P42766 20 32 RPL35 60S ribosomal protein L35 yes no 2;3 0.00012856 93.058 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.1763 1.156 18.052 7 Median 1.1789 1.1601 0.50158 2 0 Median 1.1522 1.0165 8.5751 2 0 Median 1.4173 1.4725 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93475 1.0552 29.157 2 0 Median NaN NaN NaN 0 0 Median 72478000 33282000 39196000 38427000 17759000 20668000 3229800 1400500 1829200 7457400 3061000 4396400 0 0 0 23364000 11062000 12302000 0 0 0 27499 2316 28956 145440;145441;145442;145443;145444;145445;145446 146433;146434;146435;146436;146437;146438;146439;146440;146441;146442;146443;146444 146441 12 QLDETNALLR QNSQISTEKVNQLQRQLDETNALLRTESDT NQLQRQLDETNALLRTESDTAARLRKTQAE R Q L L R T 1 1 1 1 0 1 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1171.6197 O75116;E9PF63 O75116 563 572 ROCK2 Rho-associated protein kinase 2 yes no 2 0.0028032 58.981 By MS/MS 1 1.3476 1.1219 NaN 1 Median NaN NaN NaN 0 0 Median 1.3476 1.1219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1479200 604960 874270 0 0 0 1479200 604960 874270 0 0 0 0 0 0 0 0 0 0 0 0 27500 1644 28957 145447 146445;146446 146445 2 QLDMILDEQRR EGQNRIHLEIKQLNRQLDMILDEQRRYVSS QLNRQLDMILDEQRRYVSSLTEEISKRGAG R Q L R R Y 0 2 0 2 0 2 1 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 11 1 1415.7191 P49257 P49257 351 361 LMAN1 Protein ERGIC-53 yes yes 2;3 0.00030186 74.301 By MS/MS By MS/MS By matching 3 1 1 1.1824 1.194 74.489 5 Median 1.1824 1.4144 20.309 3 0 Plateau 1.6421 1.4808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25802 0.26681 NaN 1 0 Median NaN NaN NaN 0 0 Median 43404000 17610000 25793000 30759000 10958000 19801000 8490700 3392500 5098200 0 0 0 0 0 0 4153700 3260000 893700 0 0 0 27501 2375 28958 145448;145449;145450;145451;145452 146447;146448;146449;146450;146451;146452 146449 6 QLDSIVGER NLEPLFEQYINNLRRQLDSIVGERGRLDSE INNLRRQLDSIVGERGRLDSELRNMQDLVE R Q L E R G 0 1 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1015.5298 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668 CON__P13647 229 237 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 8.0292E-05 118.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 2 0.40839 0.4302 95.112 9 Median 0.43029 0.4302 NaN 1 1 Median 0.13126 0.1078 40.896 3 3 Median 0.8009 0.83503 105.5 2 2 Median 0.61285 0.51109 NaN 1 1 Median 0.50159 0.53252 28.662 2 2 Median NaN NaN NaN 0 0 Median 46651000 32507000 14144000 5515400 4630100 885320 12082000 10045000 2036300 19703000 11679000 8024100 2635400 1821300 814080 6715900 4331300 2384700 0 0 0 + 27502 757;741;748;766 28959 145453;145454;145455;145456;145457;145458;145459;145460;145461;145462 146453;146454;146455;146456;146457;146458;146459;146460;146461;146462 146454 10 QLDTETNLHLNTK TLTRNLDVQLLDTKRQLDTETNLHLNTKEL KRQLDTETNLHLNTKELLKNAQKEIATLKQ R Q L T K E 0 0 2 1 0 1 1 0 1 0 3 1 0 0 0 0 3 0 0 0 0 0 13 0 1525.7736 P12270 P12270 879 891 TPR Nucleoprotein TPR yes yes 2;3 0.00098093 43.594 By matching By matching By MS/MS By matching 1 2 3 2 1.2265 1.1306 23.04 8 Median 1.2663 1.2038 NaN 1 0 Median 1.3423 1.1904 0.11885 2 0 Median 0.99185 1.066 29.113 3 0 Median 0.95991 0.89608 25.7 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62395000 29565000 32830000 2572700 1181000 1391700 15545000 7494000 8051400 39650000 18915000 20735000 4627000 1975300 2651700 0 0 0 0 0 0 27503 1978 28960 145463;145464;145465;145466;145467;145468;145469;145470 146463;146464;146465 146464 3 QLDTYAPFPGKK PMLELALSLLEEGVKQLDTYAPFPGKKHLE GVKQLDTYAPFPGKKHLEKAVQHCLALLNL K Q L K K H 1 0 0 1 0 1 0 1 0 0 1 2 0 1 2 0 1 0 1 0 0 0 12 1 1363.7136 Q92621 Q92621 829 840 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.00024944 84.188 By MS/MS 1 0.66149 0.76588 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66149 0.76588 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12124000 6550000 5574200 0 0 0 0 0 0 12124000 6550000 5574200 0 0 0 0 0 0 0 0 0 27504 3547 28961 145471 146466 146466 1 QLEAELGAER GSVLVLSARNDEALRQLEAELGAERSGLRV DEALRQLEAELGAERSGLRVVRVPADLGAE R Q L E R S 2 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1114.5619 P35270 P35270 49 58 SPR Sepiapterin reductase yes yes 2 0.0009719 101.38 By MS/MS By MS/MS 1 1 0.3491 0.29521 NaN 1 Median NaN NaN NaN 0 0 Median 0.3491 0.29521 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7156800 5025500 2131200 0 0 0 7156800 5025500 2131200 0 0 0 0 0 0 0 0 0 0 0 0 27505 2241 28962 145472;145473 146467;146468 146468 2 QLEAIVR ERDSDRRSSIPITVRQLEAIVRIAEALSKM SSIPITVRQLEAIVRIAEALSKMKLQPFAT R Q L V R I 1 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 827.4865 P33992;B1AHB1 P33992 612 618 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.018479 62.714 By MS/MS By MS/MS By MS/MS 1 1 1 0.9408 1.104 11.522 3 Plateau 0.9408 0.90748 NaN 1 0 Median 1.2807 1.1085 NaN 1 0 Median 0.8629 0.9084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13275000 6749200 6526100 3988700 2147500 1841200 5109100 2173900 2935200 4177600 2427800 1749800 0 0 0 0 0 0 0 0 0 27506 2224 28963 145474;145475;145476 146469;146470;146471;146472;146473 146469 5 QLEALEKEK EEREASLRERDAALKQLEALEKEKAAKLEI RDAALKQLEALEKEKAAKLEILQQQLQVAN K Q L E K A 1 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1086.5921 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 605 613 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.027661 56.378 By matching By MS/MS By MS/MS 1 2 1 0.95402 0.97918 20.166 4 Median NaN NaN NaN 0 0 Median 1.0574 0.96524 NaN 1 0 Median 0.76305 0.8418 23.405 2 0 Median NaN NaN NaN 0 0 Median 1.1016 1.1544 NaN 1 0 Median NaN NaN NaN 0 0 Median 7053000 3500600 3552400 0 0 0 212310 92815 119490 5427600 2739100 2688500 0 0 0 1413100 668650 744450 0 0 0 27507 2905;77 28964 145477;145478;145479;145480 146474;146475 146475 2 QLEDGDQPESK VNNSTPDFGFGGQKRQLEDGDQPESKKLAS GQKRQLEDGDQPESKKLASQGDSISSQLGP R Q L S K K 0 0 0 2 0 2 2 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1244.5521 Q92945;A0A087WTP3;M0R0I5 Q92945 111 121 KHSRP Far upstream element-binding protein 2 yes no 2 0.048984 26.514 By matching By MS/MS 1 1 0.85287 0.80102 6.7639 2 Median 0.75286 0.76361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96616 0.84026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1907300 995060 912240 954280 530610 423670 0 0 0 0 0 0 953020 464450 488570 0 0 0 0 0 0 27508 3568 28965 145481;145482 146476 146476 1 QLEDGRTLSDYNIQK EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK QLEDGRTLSDYNIQKESTLHLVLRLRGGMQ K Q L Q K E 0 1 1 2 0 2 1 1 0 1 2 1 0 0 0 1 1 0 1 0 0 0 15 1 1778.8799 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422 P0CG48 49 63 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2;3 0.0029706 47.706 By matching By matching By MS/MS 1 1 3 0.90358 1.0163 19.147 5 Median NaN NaN NaN 0 0 Median 1.2886 1.1148 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4558 1.4284 NaN 1 0 Median 0.90045 0.95194 8.1723 3 0 Median NaN NaN NaN 0 0 Median 28782000 16947000 11835000 0 0 0 1032400 466020 566390 0 0 0 579050 246240 332810 27170000 16234000 10936000 0 0 0 27509 606 28966 145483;145484;145485;145486;145487 146477;146478 146478 2 QLEEAEEEAQR DQADKASTRLKQLKRQLEEAEEEAQRANAS QLKRQLEEAEEEAQRANASRRKLQRELEDA R Q L Q R A 2 1 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1330.6001 P35579 P35579 1878 1888 MYH9 Myosin-9 yes yes 2 3.4812E-08 137.05 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.0559 0.93414 9.6248 6 Median 1.1514 1.0803 NaN 1 0 Median 1.1031 0.93877 5.7 3 2 Plateau 0.96984 1.062 NaN 1 0 Median 1.014 0.89436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63531000 29321000 34210000 31531000 14503000 17028000 22762000 10542000 12220000 8223900 3849300 4374700 1014500 426550 587920 0 0 0 0 0 0 27510 2244 28967 145488;145489;145490;145491;145492;145493 146479;146480;146481;146482;146483;146484;146485;146486;146487;146488 146486 10 QLEEAEEEASR DQLEKGNLRVKQLKRQLEEAEEEASRAQAG QLKRQLEEAEEEASRAQAGRRRLQRELEDV R Q L S R A 2 1 0 0 0 1 5 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 11 0 1289.5735 Q7Z406;A1L2Z2 Q7Z406 1902 1912 MYH14 Myosin-14 yes no 2 0.00070215 64.297 By MS/MS By MS/MS By matching 1 1 2 0.79384 0.96548 20.226 3 Median 1.027 1.032 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69673 0.82594 22.076 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485500 2500900 1984500 1338900 614270 724590 0 0 0 3146600 1886700 1259900 0 0 0 0 0 0 0 0 0 27511 3242 28968 145494;145495;145496;145497 146489;146490;146491 146490 3 QLEEAEEEATR EQMEKANARMKQLKRQLEEAEEEATRANAS QLKRQLEEAEEEATRANASRRKLQRELDDA R Q L T R A 2 1 0 0 0 1 5 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1303.5892 P35580 P35580 1885 1895 MYH10 Myosin-10 yes yes 2 2.3259E-05 105.86 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.64086 0.67002 26.838 5 Median 1.0061 0.94434 NaN 1 0 Median 0.74727 0.64569 33.004 2 0 Median 0.48008 0.52572 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.64086 0.67002 NaN 1 0 Median NaN NaN NaN 0 0 Median 27148000 14454000 12694000 11290000 5423800 5866400 6065000 3111600 2953400 8205900 5255900 2950000 0 0 0 1586600 662890 923730 0 0 0 27512 2245 28969 145498;145499;145500;145501;145502;145503 146492;146493;146494;146495;146496;146497 146495 6 QLEEEKNSLQEQQEEEEEARK QEETRQKLNLSSRIRQLEEEKNSLQEQQEE NSLQEQQEEEEEARKNLEKQVLALQSQLAD R Q L R K N 1 1 1 0 0 4 9 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 21 2 2602.1994 P35580 P35580 1340 1360 MYH10 Myosin-10 yes yes 4 0.0084319 22.118 By MS/MS 1 1.0844 1.2357 NaN 1 Median NaN NaN NaN 0 0 Median 1.0844 1.2357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1295700 566960 728740 0 0 0 1295700 566960 728740 0 0 0 0 0 0 0 0 0 0 0 0 27513 2245 28970 145504 146498 146498 1 QLEELLSDMK AGNKPANAVLHKVLKQLEELLSDMKADVTR HKVLKQLEELLSDMKADVTRLPATIARIPP K Q L M K A 0 0 0 1 0 1 2 0 0 0 3 1 1 0 0 1 0 0 0 0 0 0 10 0 1204.6009 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1856 1865 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.024704 54.982 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27514 246 28971 145505 146499 146499 1 QLEEQEEALR KMLEELNKQIEEQKRQLEEQEEALRQQRAA EEQKRQLEEQEEALRQQRAAVGVSMAHFSV R Q L L R Q 1 1 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1243.6044 Q9BTC0 Q9BTC0 1492 1501 DIDO1 Death-inducer obliterator 1 yes yes 2 1.2189E-07 138.4 By MS/MS 2 0.86923 0.94736 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86923 0.94736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14050000 7400000 6650100 0 0 0 0 0 0 14050000 7400000 6650100 0 0 0 0 0 0 0 0 0 27515 3824 28972 145506;145507 146500;146501 146500 2 QLELENLTTQETR LTLISEDIKSYYTVRQLELENLTTQETREI VRQLELENLTTQETREILHFHYTTWPDFGV R Q L T R E 0 1 1 0 0 2 3 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 13 0 1573.7948 P18031;B4DSN5 P18031 157 169 PTPN1 Tyrosine-protein phosphatase non-receptor type 1;Tyrosine-protein phosphatase non-receptor type yes no 2 4.2154E-05 94.616 By MS/MS By MS/MS 1 1 1.1831 1.1598 19.631 2 Median 1.3939 1.3325 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0041 1.0094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14304000 6346100 7957400 10952000 4664800 6287100 0 0 0 3351700 1681400 1670400 0 0 0 0 0 0 0 0 0 27516 2052 28973 145508;145509 146502;146503 146503 2 QLELRQEEER RRMEELHNQEVQKRKQLELRQEEERRRREE VQKRKQLELRQEEERRRREEEMRRQQEEMM K Q L E R R 0 2 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1328.6684 Q15233;H7C367 Q15233 339 348 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.00016349 104.52 By MS/MS By MS/MS By MS/MS 1 2 1 1.1747 1.1479 27.358 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0404 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.298 1.3987 42.962 2 1 Median 1.3265 1.1727 NaN 1 0 Median 18424000 7909200 10515000 0 0 0 0 0 0 1551700 783850 767830 0 0 0 13521000 5679900 7841000 3351900 1445400 1906500 27517 2935 28974 145510;145511;145512;145513 146504;146505;146506;146507;146508;146509;146510 146507 7 QLEMNLAEAER VKELSMVTELRAQVKQLEMNLAEAERQRRL AQVKQLEMNLAEAERQRRLDYESQTAHDNL K Q L E R Q 2 1 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 11 0 1302.6238 Q14789;E7EU81;H0Y867 Q14789 768 778 GOLGB1 Golgin subfamily B member 1 yes no 2 7.7313E-15 185.6 By MS/MS 1 0.83862 0.82429 NaN 1 Median 0.83862 0.82429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9507400 5042700 4464700 9507400 5042700 4464700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27518 2900 28975 145514 146511;146512 146512 2 QLEMSAEAER ETQGFQRTLEAERQRQLEMSAEAERLKLRV AERQRQLEMSAEAERLKLRVAEMSRAQARA R Q L E R L 2 1 0 0 0 1 3 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 10 0 1162.5288 Q15149 Q15149 2512 2521 PLEC Plectin yes yes 2 0.00036732 81.95 By MS/MS By matching 1 2 1.2853 1.0848 5.8977 3 Median 0.98453 0.98437 NaN 1 0 Median 1.3169 1.0899 0.66296 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20863000 8794000 12069000 5507600 2785900 2721700 15356000 6008100 9347700 0 0 0 0 0 0 0 0 0 0 0 0 27519 2933 28976 145515;145516;145517 146513;146514 146514 2 QLENSLNEFGEK EKFLGDIEVWDQAEKQLENSLNEFGEKWEL AEKQLENSLNEFGEKWELNSGDGAFYGPKI K Q L E K W 0 0 2 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 12 0 1406.6678 P26639 P26639 518 529 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 1.7424E-05 105.86 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.1202 0.98855 14.399 6 Median 0.99844 0.89913 NaN 1 0 Median 1.2015 1.0498 NaN 1 0 Median 1.2281 1.244 15.911 3 3 Plateau 1.0551 0.91428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52483000 24856000 27628000 15485000 7482900 8001700 6348800 2947600 3401200 26224000 12331000 13894000 4425800 2094500 2331300 0 0 0 0 0 0 27520 2147 28977 145518;145519;145520;145521;145522;145523 146515;146516;146517;146518;146519;146520;146521 146515 7 QLENSLNEFGEKWELNSGDGAFYGPK EKFLGDIEVWDQAEKQLENSLNEFGEKWEL KWELNSGDGAFYGPKIDIQIKDAIGRYHQC K Q L P K I 1 0 3 1 0 1 4 4 0 0 3 2 0 2 1 2 0 1 1 0 0 0 26 1 2928.3566 P26639 P26639 518 543 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 4.6327E-09 48.685 By MS/MS By MS/MS 1 2 1.3128 1.4845 27.933 3 Median 0.99597 1.0247 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.427 1.6216 12.489 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12481000 6558600 5922800 8322200 4203900 4118300 0 0 0 4159200 2354700 1804500 0 0 0 0 0 0 0 0 0 27521 2147 28978 145524;145525;145526 146522;146523;146524 146522 3 QLEPVYNSLAK DVLIEFYAPWCGHCKQLEPVYNSLAKKYKG GHCKQLEPVYNSLAKKYKGQKGLVIAKMDA K Q L A K K 1 0 1 0 0 1 1 0 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1260.6714 P13667;A0A499FI48 P13667 560 570 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00016921 79.974 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.81974 0.78585 19.998 4 Median 0.86456 0.77382 NaN 1 0 Median 1.1479 1.0034 NaN 1 0 Median 0.77723 0.79807 NaN 1 0 Median 0.70746 0.61538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34121000 17975000 16146000 19562000 10231000 9331500 5620200 2489100 3131100 8340000 4929900 3410000 598580 325580 273000 0 0 0 0 0 0 27522 1993 28979 145527;145528;145529;145530 146525;146526 146525 1 QLESLIR RKIGSSRGMVSAYPRQLESLIRLAEAHAKV GMVSAYPRQLESLIRLAEAHAKVRLSNKVE R Q L I R L 0 1 0 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 7 0 857.49707 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A494C100;Q9UJA3 A0A3B3IU45 683 689 MCM4;MCM8 DNA replication licensing factor MCM4;DNA helicase MCM8 yes no 2 0.044246 43 By MS/MS By matching 1 1 1.0484 1.0398 3.0909 2 Median 1.0423 1.0173 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0544 1.0628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4094800 1837800 2257000 2906900 1199100 1707800 0 0 0 1187900 638710 549170 0 0 0 0 0 0 0 0 0 27523 441 28980 145531;145532 146527 146527 1 QLESLPATHIR KLKHQLRHRELFLSRQLESLPATHIRGKCS FLSRQLESLPATHIRGKCSVTLLNETESLK R Q L I R G 1 1 0 0 0 1 1 0 1 1 2 0 0 0 1 1 1 0 0 0 0 0 11 0 1263.6935 E7ESY4;Q13330 E7ESY4 113 123 MTA1 Metastasis-associated protein MTA1 yes no 2;3 0.0010913 69.276 By matching By MS/MS 1 2 0.81043 0.84693 36.16 3 Plateau NaN NaN NaN 0 0 Median 0.41177 0.41424 NaN 1 0 Median 0.70621 0.74201 18.703 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9625400 5080400 4545000 0 0 0 721150 612270 108880 8904300 4468200 4436100 0 0 0 0 0 0 0 0 0 27524 888 28981 145533;145534;145535 146528;146529 146528 2 QLETLGQEK NMDNMFESYINNLRRQLETLGQEKLKLEAE INNLRRQLETLGQEKLKLEAELGNMQGLVE R Q L E K L 0 0 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1044.5451 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552 P05787 150 158 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.00040308 132.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 2 2 1.227 1.0964 21.003 11 Median 1.1258 1.0463 NaN 1 0 Median 1.295 1.0964 NaN 1 0 Median 1.1784 1.1413 5.8426 2 0 Median 1.3087 1.1698 34.526 3 1 Median 1.4269 1.389 20.491 2 0 Median 1.1647 0.9639 6.6341 2 0 Median 139770000 61298000 78471000 10757000 4948800 5808400 17218000 6996100 10222000 29494000 13118000 16376000 5642500 2396700 3245800 44474000 19173000 25301000 32183000 14666000 17517000 + 27525 750;792 28982 145536;145537;145538;145539;145540;145541;145542;145543;145544;145545;145546;145547 146530;146531;146532;146533;146534;146535;146536;146537;146538;146539;146540;146541;146542;146543;146544;146545 146545 16 QLEVEPEEPEAENK LRMIVMGHRRVHISRQLEVEPEEPEAENKH RQLEVEPEEPEAENKHKPRRKSKRGKKEAE R Q L N K H 1 0 1 0 0 1 6 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 14 0 1639.7577 K7EKE6;P36776;K7EJE8 K7EKE6 105 118 LONP1 Lon protease homolog, mitochondrial yes no 2 0.00076503 61.353 By MS/MS 2 0.48583 0.42597 88.554 2 Median NaN NaN NaN 0 0 Median 0.48583 0.42597 88.554 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6124300 4843900 1280400 0 0 0 6124300 4843900 1280400 0 0 0 0 0 0 0 0 0 0 0 0 27526 1370 28983 145548;145549 146546 146546 1 QLEVYTSGGDPESVAGEYGR LNVLHSLVDKSNINRQLEVYTSGGDPESVA TSGGDPESVAGEYGRHSLYKMLGYFSLVGL R Q L G R H 1 1 0 1 0 1 3 4 0 0 1 0 0 0 1 2 1 0 2 2 0 0 20 0 2112.96 B0QY89;Q9Y262;B0QY90 B0QY89 286 305 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 4.9897E-19 119.32 By MS/MS By matching By matching By matching 2 1 1 1 0.95766 0.83129 11.765 5 Median 0.83561 0.81814 1.8217 2 0 Median 1.0161 0.88563 NaN 1 0 Median 1.0362 1.0779 NaN 1 0 Median 0.95766 0.83129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19394000 9251500 10143000 14610000 6689900 7919700 849130 403820 445300 3777500 2062800 1714700 157820 94968 62855 0 0 0 0 0 0 27527 554 28984 145550;145551;145552;145553;145554 146547;146548 146547 2 QLFDQVVK DAELEFAIQPNTTGKQLFDQVVKTIGLREV QPNTTGKQLFDQVVKTIGLREVWFFGLQYQ K Q L V K T 0 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 8 0 975.53893 P26038;V9GZ54;P15311;E7EQR4;E9PQ82;P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3 P26038 28 35 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2 0.0087245 79.469 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.677 1.4654 46.23 5 Median 1.1929 1.0429 NaN 1 0 Median 1.677 1.4654 NaN 1 0 Median 2.1747 2.0947 NaN 1 1 Median 2.0282 1.74 76.062 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 232900000 71116000 161790000 48075000 21548000 26526000 8936400 3313600 5622800 165850000 43834000 122020000 10039000 2419700 7619500 0 0 0 0 0 0 27528 2139;879;2235 28985 145555;145556;145557;145558;145559 146549;146550;146551;146552 146551 4 QLFHHLPHETSR WNSLPALPGIRKWLKQLFHHLPHETSRLET WLKQLFHHLPHETSRLETNAPESICILDLE K Q L S R L 0 1 0 0 0 1 1 0 3 0 2 0 0 1 1 1 1 0 0 0 0 0 12 0 1500.7586 P49792 P49792 459 470 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.010217 43.991 By MS/MS 2 0.65622 0.72884 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65622 0.72884 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2306200 1328700 977530 0 0 0 0 0 0 2306200 1328700 977530 0 0 0 0 0 0 0 0 0 27529 2401 28986 145560;145561 146553;146554 146554 2 QLFHPEQLITGK LEPTVIDEVRTGTYRQLFHPEQLITGKEDA TYRQLFHPEQLITGKEDAANNYARGHYTIG R Q L G K E 0 0 0 0 0 2 1 1 1 1 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1409.7667 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;F8VX09;F8VWV9;C9JJQ8;C9JEV8;C9JQ00;C9JDL2;C9K0S6;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 P68363 85 96 TUBA1C;TUBA1B;TUBA1A;TUBA4A;TUBA8;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 5.4405E-41 225.01 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 6 7 4 3 1 8 1.0258 0.91955 16.71 27 Median 1.0012 0.92385 4.7129 6 0 Median 1.0263 0.8657 14.423 7 0 Median 1.0258 0.9945 7.2893 3 0 Median 1.1281 0.97695 4.9494 3 0 Median 1.7541 1.6757 NaN 1 0 Median 1.1361 0.93965 17.114 7 0 Median 433040000 211530000 221510000 232660000 114590000 118070000 88815000 43512000 45302000 66977000 33426000 33551000 3847100 1775700 2071400 2831100 1080300 1750800 37908000 17142000 20766000 27530 2633;3212;1034 28987 145562;145563;145564;145565;145566;145567;145568;145569;145570;145571;145572;145573;145574;145575;145576;145577;145578;145579;145580;145581;145582;145583;145584;145585;145586;145587;145588;145589;145590 146555;146556;146557;146558;146559;146560;146561;146562;146563;146564;146565;146566;146567;146568;146569;146570;146571;146572 146557 18 QLFHPEQLITGKEDAANNYAR LEPTVIDEVRTGTYRQLFHPEQLITGKEDA QLITGKEDAANNYARGHYTIGKEIIDLVLD R Q L A R G 3 1 2 1 0 2 2 1 1 1 2 1 0 1 1 0 1 0 1 0 0 0 21 1 2414.1979 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;F8VX09;F8VWV9;C9JJQ8;C9JEV8;C9JQ00;C9JDL2;C9K0S6;P68363;P68366;Q71U36;P0DPH8;P0DPH7;F8VQQ4 P68363 85 105 TUBA1C;TUBA1B;TUBA1A;TUBA4A;TUBA8 Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2;3;4 6.6147E-32 174.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 4 3 2 4 3 0.96484 0.92067 33.002 26 Median 0.81181 0.84505 19.307 11 2 Median 0.99784 0.92111 25.935 4 0 Median 0.93328 0.94882 5.2676 2 0 Median 0.97474 0.93173 1.2968 2 0 Median 1.6599 1.7797 10.911 4 0 Median 1.1255 0.97685 36.643 3 0 Median 657420000 334460000 322960000 500470000 260700000 239770000 21699000 10591000 11109000 71393000 35633000 35760000 27074000 13853000 13221000 32682000 11855000 20827000 4098100 1826700 2271400 27531 2633;3212;1034 28988 145591;145592;145593;145594;145595;145596;145597;145598;145599;145600;145601;145602;145603;145604;145605;145606;145607;145608;145609;145610;145611;145612;145613;145614;145615;145616;145617 146573;146574;146575;146576;146577;146578;146579;146580;146581;146582;146583;146584;146585;146586;146587;146588;146589;146590;146591;146592;146593;146594;146595;146596;146597;146598 146577 26 QLFLGGVDR FPTQALNFAFKDKYKQLFLGGVDRHKQFWR FKDKYKQLFLGGVDRHKQFWRYFAGNLASG K Q L D R H 0 1 0 1 0 1 0 2 0 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1003.5451 P12235;V9GYG0 P12235 97 105 SLC25A4 ADP/ATP translocase 1 yes no 2 0.0034093 65.305 By MS/MS 3 1.523 1.2781 12.062 3 Median NaN NaN NaN 0 0 Median 1.523 1.2781 12.062 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8294800 3230300 5064500 0 0 0 8294800 3230300 5064500 0 0 0 0 0 0 0 0 0 0 0 0 27532 1976 28989 145618;145619;145620 146599;146600 146599 2 QLFLQTYAR LLHDQVGVIQFGPYKQLFLQTYARGRTTYQ QFGPYKQLFLQTYARGRTTYQALPCLPSMY K Q L A R G 1 1 0 0 0 2 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1138.6135 P53621;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 957 965 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.01817 41.029 By matching By MS/MS 1 1 0.92086 0.89311 5.1167 2 Median 0.77282 0.86137 NaN 1 0 Median 1.0973 0.92601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11096000 6691300 4404500 6011800 4190800 1821000 5084100 2500600 2583500 0 0 0 0 0 0 0 0 0 0 0 0 27533 2473 28990 145621;145622 146601 146601 1 QLFSSLFSGILK TPLQAVAQRDPIIAKQLFSSLFSGILKEMD IAKQLFSSLFSGILKEMDKFKTLSEKNNIT K Q L L K E 0 0 0 0 0 1 0 1 0 1 3 1 0 2 0 3 0 0 0 0 0 0 12 0 1338.7547 P78527 P78527 2807 2818 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.001379 53.683 By MS/MS By matching By MS/MS By matching 1 2 4 1 1.0318 1.1143 19.879 8 Median 1.0414 1.0437 NaN 1 0 Median 1.3756 1.2072 10.88 2 0 Median 0.97037 1.0517 21.537 4 0 Median 1.5183 1.3698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36232000 16582000 19650000 12621000 6293800 6327000 19075000 8067300 11008000 4386300 2155300 2231000 150010 65398 84612 0 0 0 0 0 0 27534 2647 28991 145623;145624;145625;145626;145627;145628;145629;145630 146602;146603;146604 146604 3 QLGGSVELVDIGK GEIRRMMEVAAADVKQLGGSVELVDIGKQK VKQLGGSVELVDIGKQKLPDGSEIPLPPIL K Q L G K Q 0 0 0 1 0 1 1 3 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1313.7191 Q96KP4;J3QKT2;J3QQN6;J3QR27;J3QLU1;J3QKQ0;J3QRD0;J3QL02;J3KSV5;A0A087WYZ1;J3KRD5;A0A087WVS2;J3QRA8 Q96KP4 54 66 CNDP2 Cytosolic non-specific dipeptidase yes no 2 0.0040594 42.001 By MS/MS 1 1.0222 0.95931 NaN 1 Median 1.0222 0.95931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6633800 3083900 3550000 6633800 3083900 3550000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27535 3696 28992 145631 146605;146606 146605 2 QLGIIVSDFQPSSQAGLNQK DHLEEHLEKFVENIRQLGIIVSDFQPSSQA VSDFQPSSQAGLNQKLNFIVTGLQDIDKCR R Q L Q K L 1 0 1 1 0 4 0 2 0 2 2 1 0 1 1 3 0 0 0 1 0 0 20 0 2129.1117 Q9BTT4 Q9BTT4 21 40 MED10 Mediator of RNA polymerase II transcription subunit 10 yes yes 2 0.03908 20.663 By MS/MS 1 0.78601 0.78252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78601 0.78252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2076500 1126100 950400 0 0 0 0 0 0 2076500 1126100 950400 0 0 0 0 0 0 0 0 0 27536 3828 28993 145632 146607 146607 1 QLGISATMLNASSSK CPLISLMEDQLMVLKQLGISATMLNASSSK QLGISATMLNASSSKEHVKWVHAEMVNKNS K Q L S K E 2 0 1 0 0 1 0 1 0 1 2 1 1 0 0 4 1 0 0 0 0 0 15 0 1506.7712 P46063;F8WA66;F8WD97 P46063 153 167 RECQL ATP-dependent DNA helicase Q1 yes no 2 4.6488E-10 108.56 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0767 0.99587 8.3919 4 Median 0.92566 0.8878 NaN 1 0 Median 1.1412 0.98514 NaN 1 0 Median 1.0158 1.0067 NaN 1 0 Median 1.2782 1.0882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43908000 21874000 22034000 4508100 2574900 1933100 1367700 666220 701440 34697000 17258000 17440000 3334700 1375200 1959600 0 0 0 0 0 0 27537 2337 28994 145633;145634;145635;145636 146608;146609;146610 146608 3 QLGLPTALKR GPLEQFPHSMEPQLRQLGLPTALKRGVVTL EPQLRQLGLPTALKRGVVTLLSDYEVCKEG R Q L K R G 1 1 0 0 0 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 10 1 1095.6764 Q9UKD2 Q9UKD2 155 164 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.00059999 78.77 By matching By matching By MS/MS By MS/MS 1 1 4 4 1.1556 0.99866 19.596 9 Median 1.3783 1.3648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1556 1.1811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75186 0.87193 18.868 4 0 Median 1.2131 0.95626 3.4068 3 0 Median 91746000 47750000 43996000 1761400 538860 1222500 0 0 0 810420 430840 379580 0 0 0 70736000 38472000 32263000 18439000 8308300 10130000 27538 4308 28995 145637;145638;145639;145640;145641;145642;145643;145644;145645;145646 146611;146612;146613;146614;146615;146616;146617 146612 7 QLGQDLLNSYIENEGK KVKSIDLPIQSSLCRQLGQDLLNSYIENEG LGQDLLNSYIENEGKMIMQDKLEKERNDAK R Q L G K M 0 0 2 1 0 2 2 2 0 1 3 1 0 0 0 1 0 0 1 0 0 0 16 0 1819.8952 O95757;E9PDE8 O95757 591 606 HSPA4L Heat shock 70 kDa protein 4L yes no 2 3.1567E-06 77.185 By MS/MS 1 1.6979 1.5046 NaN 1 Median NaN NaN NaN 0 0 Median 1.6979 1.5046 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1826200 621830 1204400 0 0 0 1826200 621830 1204400 0 0 0 0 0 0 0 0 0 0 0 0 27539 1790 28996 145647 146618 146618 1 QLHLNQLIR RISHLPLVEELRSLRQLHLNQLIRTSGVVT ELRSLRQLHLNQLIRTSGVVTSCTGVLPQL R Q L I R T 0 1 1 0 0 2 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1133.6669 P49736;H0Y8E6 P49736 299 307 MCM2 DNA replication licensing factor MCM2 yes no 2 0.0071794 76.774 By MS/MS 2 0.96746 0.93264 NaN 1 Median 0.96746 0.93264 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9273900 4453100 4820800 9273900 4453100 4820800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27540 2393 28997 145648;145649 146619;146620 146620 2 QLIMANPQMQQLIQR NPFVQSMLSNPDLMRQLIMANPQMQQLIQR QLIMANPQMQQLIQRNPEISHMLNNPDIMR R Q L Q R N 1 1 1 0 0 5 0 0 0 2 2 0 2 0 1 0 0 0 0 0 0 0 15 0 1810.9546 Q9UHD9;Q9UMX0 Q9UMX0 207 221 UBQLN2;UBQLN1 Ubiquilin-2;Ubiquilin-1 no no 2 4.8334E-06 86.624 By MS/MS By matching 1 1 1.0037 0.92245 1.2553 2 Median 0.9767 0.93067 NaN 1 0 Median 1.0315 0.9143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10832000 5562600 5269600 10362000 5341600 5020500 470050 221000 249050 0 0 0 0 0 0 0 0 0 0 0 0 27541 4335;4277 28998 145650;145651 146621;146622 146622 2 QLIMQSEMR QKEFMLMNARLQLERQLIMQSEMRERQMAM RLQLERQLIMQSEMRERQMAMQIAWSREFL R Q L M R E 0 1 0 0 0 2 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 9 0 1134.5525 Q9HBL7 Q9HBL7 31 39 PLGRKT Plasminogen receptor (KT) yes yes 2 0.00048735 99.442 By MS/MS By MS/MS 1 1 1.5397 1.4003 59.958 2 Median 0.93946 0.9164 NaN 1 0 Median 2.5234 2.1396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8134700 2785500 5349200 3475700 1582200 1893500 4659100 1203300 3455700 0 0 0 0 0 0 0 0 0 0 0 0 27542 4020 28999 145652;145653 146623;146624;146625 146625 3 QLIPIFTDVALK QNGTVYTCSSDGKVRQLIPIFTDVALKFEH KVRQLIPIFTDVALKFEHQLIKLSDVFGSV R Q L L K F 1 0 0 1 0 1 0 0 0 2 2 1 0 1 1 0 1 0 0 1 0 0 12 0 1356.8017 Q9UKN8 Q9UKN8 449 460 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.0006573 62.463 By matching By MS/MS By matching By matching 1 1 1 1 0.85569 0.82766 23.44 4 Median 1.1766 1.1986 NaN 1 0 Median 0.8478 0.74148 NaN 1 0 Median 0.86365 0.92386 NaN 1 0 Median 0.82306 0.7248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6091900 2965600 3126300 538060 252210 285850 4591200 2208600 2382500 853250 451130 402110 109440 53592 55849 0 0 0 0 0 0 27543 4314 29000 145654;145655;145656;145657 146626;146627 146626 2 QLIVANAGDSR SDSGTTAVVALIRGKQLIVANAGDSRCVVS IRGKQLIVANAGDSRCVVSEAGKALDMSYD K Q L S R C 2 1 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1142.6044 O15355 O15355 340 350 PPM1G Protein phosphatase 1G yes yes 2 0.061826 60.102 By MS/MS By matching 1 1 0.97144 0.88647 2.8246 2 Median 0.93989 0.90435 NaN 1 0 Median 1.004 0.86894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12193000 5206600 6986200 6819200 3376300 3443000 5373500 1830300 3543200 0 0 0 0 0 0 0 0 0 0 0 0 27544 1538 29001 145658;145659 146628 146628 0 QLIVGVNK QTREHALLAYTLGVKQLIVGVNKMDSTEPP AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE K Q L N K M 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 P68104;Q5VTE0;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488 P68104 147 154 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 0.0023766 116.11 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 8 8 6 5 1 4 1.2174 1.1368 24.174 32 Median 1.2036 1.1547 19.191 8 0 Median 1.3037 1.1089 9.8342 8 0 Median 1.2362 1.2306 12.013 6 0 Median 1.1421 1.0372 44.788 5 0 Median 0.86366 0.91285 NaN 1 0 Median 1.4857 1.2433 12.448 4 0 Median 990140000 452650000 537490000 108630000 47791000 60844000 246110000 114150000 131960000 214520000 95347000 119170000 395390000 183800000 211590000 258150 134890 123270 25229000 11429000 13800000 27545 2632;404 29002 145660;145661;145662;145663;145664;145665;145666;145667;145668;145669;145670;145671;145672;145673;145674;145675;145676;145677;145678;145679;145680;145681;145682;145683;145684;145685;145686;145687;145688;145689;145690;145691 146629;146630;146631;146632;146633;146634;146635;146636;146637;146638;146639;146640;146641;146642;146643;146644;146645;146646;146647;146648;146649;146650;146651;146652;146653;146654;146655;146656;146657;146658;146659;146660;146661;146662 146644 34 QLIVPPHLAHGESGAR GLDTGLQGMCVGERRQLIVPPHLAHGESGA LIVPPHLAHGESGARGVPGSAVLLFEVELV R Q L A R G 2 1 0 0 0 1 1 2 2 1 2 0 0 0 2 1 0 0 0 1 0 0 16 0 1680.906 Q96AY3;H0Y827 Q96AY3 453 468 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes no 4 0.031326 25.365 By MS/MS 1 0.63525 0.62982 NaN 1 Median 0.63525 0.62982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1532100 958730 573410 1532100 958730 573410 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27546 3603 29003 145692 146663 146663 1 QLLAGGIAGAVSR DEFTEDEKKSGQWWRQLLAGGIAGAVSRTS WRQLLAGGIAGAVSRTSTAPLDRLKIMMQV R Q L S R T 3 1 0 0 0 1 0 3 0 1 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1211.6986 Q6NUK1;A0A3B3IU96 Q6NUK1 197 209 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes no 2 0.00030544 77.64 By MS/MS By MS/MS By matching 1 1 1 1.0118 0.97487 19.362 3 Median 1.0118 0.95248 NaN 1 0 Median 1.596 1.3467 NaN 1 0 Median 0.97131 0.97487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39335000 19148000 20187000 28129000 14175000 13953000 7068300 2898000 4170300 4138000 2074900 2063100 0 0 0 0 0 0 0 0 0 27547 3143 29004 145693;145694;145695 146664;146665;146666 146665 3 QLLAPVVK VVSFNRGARGQNTLRQLLAPVVKEIIDDKS RGQNTLRQLLAPVVKEIIDDKSLIINTNPV R Q L V K E 1 0 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 8 0 866.55894 E7EWC2;F5H7S7;Q13576 E7EWC2 933 940 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 0.028842 40.103 By MS/MS By MS/MS 1 3 1.0345 0.95145 7.927 4 Median 1.0519 1.0109 NaN 1 0 Median 1.0175 0.8955 8.0548 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13099000 6769500 6329100 4690600 2590100 2100500 8408000 4179500 4228500 0 0 0 0 0 0 0 0 0 0 0 0 27548 901 29005 145696;145697;145698;145699 146667;146668;146669 146668 3 QLLDDHKDVVTLLAEGLR IKDQADEAQYCQLVRQLLDDHKDVVTLLAE DDHKDVVTLLAEGLRESRKHIEDEKLVRYF R Q L L R E 1 1 0 3 0 1 1 1 1 0 5 1 0 0 0 0 1 0 0 2 0 0 18 1 2034.111 O14874;H3BTL2;H3BS02 O14874 157 174 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes no 3 3.9341E-06 51.193 By MS/MS By matching 1 1 1.0354 1.0665 3.4095 2 Median NaN NaN NaN 0 0 Median 1.1152 1.0411 NaN 1 0 Median 0.96126 1.0925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098900 943550 1155300 0 0 0 1284500 583250 701250 814380 360300 454090 0 0 0 0 0 0 0 0 0 27549 1499 29006 145700;145701 146670 146670 1 QLLDEVEVATEPAGSR ELQLPRLPELFETGRQLLDEVEVATEPAGS LLDEVEVATEPAGSRIVQEKVFKGLDLLEK R Q L S R I 2 1 0 1 0 1 3 1 0 0 2 0 0 0 1 1 1 0 0 2 0 0 16 0 1712.8581 P78318 P78318 21 36 IGBP1 Immunoglobulin-binding protein 1 yes yes 2 0.00013297 53.528 By MS/MS By matching 1 1 0.80392 0.763 49.299 2 Median 1.0627 1.0812 NaN 1 0 Median 0.60814 0.53844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1503900 795630 708300 1377400 712600 664790 126540 83028 43514 0 0 0 0 0 0 0 0 0 0 0 0 27550 2638 29007 145702;145703 146671 146671 1 QLLDQVEQIQK IAAKDKLTELQLRARQLLDQVEQIQKEQDY LRARQLLDQVEQIQKEQDYQRYREERFRLT R Q L Q K E 0 0 0 1 0 4 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1340.73 Q7Z7H5 Q7Z7H5 162 172 TMED4 Transmembrane emp24 domain-containing protein 4 yes yes 2 1.8427E-05 156.35 By MS/MS By MS/MS 2 1 1.2694 1.1909 6.688 3 Median 1.2125 1.1406 8.7759 2 0 Median 1.4157 1.1909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34571000 15468000 19103000 30170000 13688000 16482000 4401100 1780600 2620500 0 0 0 0 0 0 0 0 0 0 0 0 27551 3258 29008 145704;145705;145706 146672;146673;146674;146675 146672 4 QLLDQVEQIQKEQDYQR IAAKDKLTELQLRARQLLDQVEQIQKEQDY LDQVEQIQKEQDYQRYREERFRLTSESTNQ R Q L Q R Y 0 1 0 2 0 6 2 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 17 1 2160.0811 Q7Z7H5 Q7Z7H5 162 178 TMED4 Transmembrane emp24 domain-containing protein 4 yes yes 3 6.9941E-06 66.809 By MS/MS By matching 1 1 2.1263 2.1058 13.635 2 Median 1.8277 1.9123 NaN 1 0 Median 2.4738 2.319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8998700 2789000 6209700 7799300 2438400 5360900 1199400 350590 848790 0 0 0 0 0 0 0 0 0 0 0 0 27552 3258 29009 145707;145708 146676 146676 1 QLLDSGLPSLLVR LATLASSSQSPEAIKQLLDSGLPSLLVRSL IKQLLDSGLPSLLVRSLASFCFSHISSSES K Q L V R S 0 1 0 1 0 1 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 13 0 1409.8242 A0A3B3IUB9;Q9NR09 Q9NR09 3625 3637 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.0014995 52.79 By MS/MS By MS/MS 1 1 0.96126 0.89255 11.953 2 Median 0.95738 0.97127 NaN 1 0 Median 0.96516 0.82022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3829300 1739000 2090300 2582100 1127200 1454900 1247200 611820 635340 0 0 0 0 0 0 0 0 0 0 0 0 27553 4073;445 29010 145709;145710 146677;146678;146679 146677 3 QLLEEELAR LIRLRAETEQGEQQRQLLEEELARLQREAA QGEQQRQLLEEELARLQREAAAATQKRQEL R Q L A R L 1 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1099.5873 Q15149 Q15149 1867 1875 PLEC Plectin yes yes 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.1035 1.0568 32.05 6 Median 1.3221 1.2857 NaN 1 0 Median 1.6373 1.3114 41.872 3 0 Plateau 1.0528 1.1111 NaN 1 0 Median 1.1566 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50677000 21374000 29303000 21562000 8815800 12747000 17900000 7269700 10630000 10630000 5012500 5617100 585120 275720 309400 0 0 0 0 0 0 27554 2933 29011 145711;145712;145713;145714;145715;145716 146680;146681;146682;146683;146684;146685;146686;146687 146680 8 QLLEELER EVLRRVEEAKRIMEKQLLEELERQRQAELA AKRIMEKQLLEELERQRQAELAAQKAREEE K Q L E R Q 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1028.5502 Q9NWB6 Q9NWB6 171 178 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.0063783 71.501 By MS/MS 2 0.87042 0.89821 10.509 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87042 0.89821 10.509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12384000 5773800 6610400 0 0 0 0 0 0 12384000 5773800 6610400 0 0 0 0 0 0 0 0 0 27555 4148 29012 145717;145718 146688;146689 146688 2 QLLEVQLQQNK EDLNQVITIKDSQQKQLLEVQLQQNKELEN SQQKQLLEVQLQQNKELENKYAKLEEKLKE K Q L N K E 0 0 1 0 0 4 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1339.746 Q14789 Q14789 2553 2563 GOLGB1 Golgin subfamily B member 1 yes yes 2 0.00014953 88.948 By MS/MS By MS/MS 1 1 1.2913 1.2021 2.5552 2 Median 1.2314 1.224 NaN 1 1 Median 1.354 1.1805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9091700 3005100 6086600 5021900 1327900 3694100 4069800 1677300 2392500 0 0 0 0 0 0 0 0 0 0 0 0 27556 2900 29013 145719;145720 146690;146691 146691 2 QLLHNFPPDQLTSSGAPFWSGPK WACHHWHTQYSNNIRQLLHNFPPDQLTSSG DQLTSSGAPFWSGPKRCPHPLTFDVNNPLH R Q L P K R 1 0 1 1 0 2 0 2 1 0 3 1 0 2 4 3 1 1 0 0 0 0 23 0 2523.2547 P22314;Q5JRR6 P22314 724 746 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 3 4.295E-12 59.356 By MS/MS By MS/MS By matching 2 3 1 0.67447 0.58601 23.09 6 Median 0.51121 0.49518 0.32634 2 0 Median 0.79684 0.69263 11.448 3 0 Plateau 0.82207 0.90132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26321000 15883000 10437000 19774000 12414000 7360300 3472900 1817800 1655100 3073300 1651300 1422000 0 0 0 0 0 0 0 0 0 27557 2100 29014 145721;145722;145723;145724;145725;145726 146692;146693;146694;146695;146696;146697;146698;146699 146692 8 QLLISAVK EFQDCGVGLNAAQFKQLLISAVKDLFGEVD LNAAQFKQLLISAVKDLFGEVDAALPLDIL K Q L V K D 1 0 0 0 0 1 0 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 870.55385 O95059 O95059 42 49 RPP14 Ribonuclease P protein subunit p14 yes yes 2 0.028622 40.268 By MS/MS By matching By matching By matching 2 1 1 1 1.2605 1.3274 18.168 5 Median 1.2814 1.3748 4.964 2 0 Median 0.88005 0.90369 NaN 1 0 Median 1.2605 1.2742 NaN 1 0 Median 1.6128 1.3517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6711300 3244000 3467300 3784300 1746200 2038100 1787500 938600 848900 965830 498020 467800 173690 61234 112460 0 0 0 0 0 0 27558 1742 29015 145727;145728;145729;145730;145731 146700 146700 1 QLLLDTTDKFR AEAWAQLQGSSAARRQLLLDTTDKFRFFKA AARRQLLLDTTDKFRFFKAVRELMLWMDEV R Q L F R F 0 1 0 2 0 1 0 0 0 0 3 1 0 1 0 0 2 0 0 0 0 0 11 1 1348.7351 O15020 O15020 1901 1911 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 0.0024638 81.865 By matching By MS/MS 1 2 0.91516 1.0924 13.273 3 Median 0.89192 0.91308 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9534 1.1369 5.6512 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6641000 3500300 3140700 1137000 499620 637430 0 0 0 5504000 3000700 2503300 0 0 0 0 0 0 0 0 0 27559 1512 29016 145732;145733;145734 146701;146702 146702 1 QLLLESQSQLDAAK SAECQNYAKEVAGLRQLLLESQSQLDAAKS RQLLLESQSQLDAAKSEAQKQSDELALVRQ R Q L A K S 2 0 0 1 0 3 1 0 0 0 4 1 0 0 0 2 0 0 0 0 0 0 14 0 1542.8253 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1228 1241 RRBP1 Ribosome-binding protein 1 yes no 2 0.0026176 42.001 By matching By MS/MS 1 1 1.5431 1.3245 1.0084 2 Median NaN NaN NaN 0 0 Median 1.5175 1.334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.569 1.3151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2659100 997480 1661600 0 0 0 1556900 486450 1070500 0 0 0 1102100 511040 591070 0 0 0 0 0 0 27560 4222 29017 145735;145736 146703 146703 1 QLLLIAGLTR LSINSDFSDLREIKKQLLLIAGLTRERGLL REIKKQLLLIAGLTRERGLLHSSKWSAELA K Q L T R E 1 1 0 0 0 1 0 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 10 0 1096.6968 Q9UJX2;D6RBY8;D6RCF8;H0Y936 Q9UJX2 35 44 CDC23 Cell division cycle protein 23 homolog yes no 2 0.0079033 47.198 By matching By MS/MS 1 1 1.1091 1.0792 1.4268 2 Median NaN NaN NaN 0 0 Median 1.2135 1.0902 NaN 1 0 Median 1.0137 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1145300 568650 576600 0 0 0 189420 89338 100080 955830 479310 476520 0 0 0 0 0 0 0 0 0 27561 4300 29018 145737;145738 146704 146704 1 QLLLTADDR SIGTENTEENRRFYRQLLLTADDRVNPCIG NRRFYRQLLLTADDRVNPCIGGVILFHETL R Q L D R V 1 1 0 2 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1043.5611 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 J3KPS3 61 69 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2 5.7529E-05 151.5 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.114 1.091 15.064 4 Median 1.1873 1.1924 NaN 1 0 Median 1.0242 0.86327 NaN 1 0 Median 1.0739 1.1736 NaN 1 0 Median 1.1555 1.0142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81229000 35069000 46160000 58329000 24608000 33720000 2158100 1136000 1022100 18862000 8502900 10359000 1880400 821470 1059000 0 0 0 0 0 0 27562 1310 29019 145739;145740;145741;145742 146705;146706;146707;146708 146707 4 QLLLTSPVPGR DAEKESVMMFGRNLRQLLLTSPVPGRTLMG RNLRQLLLTSPVPGRTLMGVDPGYKHGCKL R Q L G R T 0 1 0 0 0 1 0 1 0 0 3 0 0 0 2 1 1 0 0 1 0 0 11 0 1179.6976 Q8N5C6 Q8N5C6 527 537 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 0.00071474 64.04 By MS/MS 1 0.65846 0.72248 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65846 0.72248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2750000 1512800 1237300 0 0 0 0 0 0 2750000 1512800 1237300 0 0 0 0 0 0 0 0 0 27563 3377 29020 145743 146709 146709 1 QLLMVGGLDR PGKFYSLPQSPQQFKQLLMVGGLDRYFQVA PQQFKQLLMVGGLDRYFQVARCYRDEGSRP K Q L D R Y 0 1 0 1 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 1 0 0 10 0 1100.6012 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 248 257 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0030923 57.96 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.493 1.4096 22.706 4 Median 0.9844 0.95994 NaN 1 0 Median 1.696 1.4682 NaN 1 0 Median 1.3143 1.3532 NaN 1 0 Median 1.9065 1.6176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16836000 7142500 9693100 4630600 2154400 2476300 5053000 1818000 3235000 6760700 3026500 3734200 391340 143720 247620 0 0 0 0 0 0 27564 3171 29021 145744;145745;145746;145747 146710;146711;146712 146711 3 QLLNAITHPEIR RKVLGDLIFNQPDRRQLLNAITHPEIRKEM DRRQLLNAITHPEIRKEMMKETFKYFLRGY R Q L I R K 1 1 1 0 0 1 1 0 1 2 2 0 0 0 1 0 1 0 0 0 0 0 12 0 1403.7885 K7ESP4;Q8WVC6 K7ESP4 81 92 DCAKD Dephospho-CoA kinase domain-containing protein yes no 3 0.00066449 48.659 By MS/MS 1 0.77652 0.73581 NaN 1 Median 0.77652 0.73581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9214100 5254000 3960100 9214100 5254000 3960100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27565 1402 29022 145748 146713 146713 1 QLLQANPILEAFGNAK ASSHKSKKDQGELERQLLQANPILEAFGNA LLQANPILEAFGNAKTVKNDNSSRFGKFIR R Q L A K T 3 0 2 0 0 2 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 16 0 1725.9414 P35579;Q7Z406 P35579 210 225 MYH9;MYH14 Myosin-9;Myosin-14 no no 2 5.8796E-47 224.42 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 2 3 1 1 0.97333 0.94225 29.886 12 Median 0.98566 0.99917 13.579 5 0 Median 1.2466 1.0983 44.21 2 0 Median 0.86551 0.94585 50.79 3 0 Median 0.97948 0.88009 NaN 1 0 Median 0.89056 0.93866 NaN 1 0 Median NaN NaN NaN 0 0 Median 79942000 40580000 39362000 31840000 15588000 16252000 35230000 18451000 16779000 9703800 4908500 4795300 264920 148830 116080 2904000 1484100 1419900 0 0 0 27566 2244;3242 29023 145749;145750;145751;145752;145753;145754;145755;145756;145757;145758;145759;145760 146714;146715;146716;146717;146718;146719;146720;146721;146722;146723;146724;146725 146725 12 QLLQANPILESFGNAK HKGRKDHNIPGELERQLLQANPILESFGNA LLQANPILESFGNAKTVKNDNSSRFGKFIR R Q L A K T 2 0 2 0 0 2 1 1 0 1 3 1 0 1 1 1 0 0 0 0 0 0 16 0 1741.9363 P35580 P35580 217 232 MYH10 Myosin-10 yes yes 2 0.00023051 49.5 By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 0.92897 0.8975 19.515 5 Median 0.92897 0.8975 NaN 1 0 Median 1.121 0.99354 NaN 1 0 Median 0.55546 0.61858 NaN 1 0 Median 1.0679 0.96656 NaN 1 0 Median 0.73278 0.77504 NaN 1 0 Median NaN NaN NaN 0 0 Median 23883000 12435000 11449000 8109500 4074100 4035400 8010300 3633500 4376800 5359000 3420900 1938100 112490 59581 52908 2292100 1246700 1045400 0 0 0 27567 2245 29024 145761;145762;145763;145764;145765 146726;146727;146728;146729;146730 146726 5 QLLQEQESVK EELRRLSSEVEALRRQLLQEQESVKQAHLR EALRRQLLQEQESVKQAHLRNEHFQKAIED R Q L V K Q 0 0 0 0 0 3 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1200.635 P15924 P15924 1667 1676 DSP Desmoplakin yes yes 2 0.020671 52.482 By MS/MS 2 1.3983 1.1814 43.792 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3983 1.1814 43.792 2 2 Median 1999800 749260 1250600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1999800 749260 1250600 27568 2021 29025 145766;145767 146731;146732 146731 2 QLLQLLTTYIVR PPKDSDQLDVIQENRQLLQLLTTYIVRENS ENRQLLQLLTTYIVRENSQVGEGVCAVLLG R Q L V R E 0 1 0 0 0 2 0 0 0 1 4 0 0 0 0 0 2 0 1 1 0 0 12 0 1459.8763 Q5T4S7;A0A0A0MSW0 Q5T4S7 1490 1501 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00016877 86.624 By MS/MS By MS/MS 2 1 1.1413 1.0529 10.034 2 Median 1.1279 1.1304 NaN 1 1 Median 1.1548 0.98082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4780600 2213400 2567200 1194100 548070 646020 3586500 1665300 1921200 0 0 0 0 0 0 0 0 0 0 0 0 27569 3089 29026 145768;145769;145770 146733;146734;146735 146735 3 QLLQNPPAGVDPIIWEQAK TLSMTRTELSPAQIKQLLQNPPAGVDPIIW NPPAGVDPIIWEQAKVDNPDSEKLIPVPMV K Q L A K V 2 0 1 1 0 3 1 1 0 2 2 1 0 0 3 0 0 1 0 1 0 0 19 0 2116.1317 Q7Z3B4 Q7Z3B4 295 313 NUP54 Nucleoporin p54 yes yes 2 0.00010417 43.991 By MS/MS 1 0.53886 0.55492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53886 0.55492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2234100 1317700 916330 0 0 0 0 0 0 2234100 1317700 916330 0 0 0 0 0 0 0 0 0 27570 3239 29027 145771 146736 146736 1 QLLQQLVTSYPSTK LQHMHHDAILASSARQLLQQLVTSYPSTKM RQLLQQLVTSYPSTKMVIVSLHTFTLLAAS R Q L T K M 0 0 0 0 0 3 0 0 0 0 3 1 0 0 1 2 2 0 1 1 0 0 14 0 1604.8774 Q9NVH2 Q9NVH2 216 229 INTS7 Integrator complex subunit 7 yes yes 2 0.012343 32.606 By MS/MS 1 1.0458 1.0872 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0458 1.0872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1129200 558200 570970 0 0 0 0 0 0 1129200 558200 570970 0 0 0 0 0 0 0 0 0 27571 4131 29028 145772 146737 146737 1 QLLQTVNVPIIDGAK LEHETAVTVSEEVSKQLLQTVNVPIIDGAK QLLQTVNVPIIDGAKEVSSLEGSPPPCLGQ K Q L A K E 1 0 1 1 0 2 0 1 0 2 2 1 0 0 1 0 1 0 0 2 0 0 15 0 1607.9247 Q02952 Q02952 1373 1387 AKAP12 A-kinase anchor protein 12 yes yes 2 9.3738E-05 80.979 By MS/MS By matching By matching 2 2 1 1.1646 1.0608 23.975 5 Median 1.0857 1.0569 25.512 2 0 Median 1.1444 1.0188 5.719 2 0 Median 1.4795 1.6234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16212000 7400300 8811800 14605000 6685600 7919300 1141500 544920 596620 465630 169760 295870 0 0 0 0 0 0 0 0 0 27572 2705 29029 145773;145774;145775;145776;145777 146738;146739;146740 146739 3 QLLSLAANGIQR SKAMLKVQEDIKALKQLLSLAANGIQRNTL ALKQLLSLAANGIQRNTLNIDKLKIETAQE K Q L Q R N 2 1 1 0 0 2 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1282.7357 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 239 250 NUPL1 Nucleoporin p58/p45 yes no 2 6.2109E-06 135.71 By MS/MS By matching 1 1 1.0672 0.98986 8.0452 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92025 0.93512 NaN 1 0 Median 1.2376 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14252000 7505700 6746100 0 0 0 0 0 0 13824000 7329000 6495100 427790 176750 251030 0 0 0 0 0 0 27573 1247 29030 145778;145779 146741;146742 146742 2 QLLTLSSELSQAR EKRITEAEKNERVQRQLLTLSSELSQARDE QRQLLTLSSELSQARDENKRTHNDIIHNEN R Q L A R D 1 1 0 0 0 2 1 0 0 0 4 0 0 0 0 3 1 0 0 0 0 0 13 0 1444.7886 P15311;E7EQR4 P15311 530 542 EZR Ezrin yes no 2;3 4.8234E-07 155.11 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2283 1.1089 33.045 6 Median 1.2106 1.1448 NaN 1 0 Median 0.85283 0.7515 36.574 2 0 Median 1.3782 1.4041 10.808 2 0 Median 1.2462 1.0741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 232260000 102370000 129890000 26285000 11548000 14737000 49191000 22390000 26801000 144760000 63189000 81575000 12020000 5241300 6778700 0 0 0 0 0 0 27574 879 29031 145780;145781;145782;145783;145784;145785 146743;146744;146745;146746;146747;146748;146749;146750;146751;146752 146751 10 QLLTLSSELSQARDENKR EKRITEAEKNERVQRQLLTLSSELSQARDE TLSSELSQARDENKRTHNDIIHNENMRQGR R Q L K R T 1 2 1 1 0 2 2 0 0 0 4 1 0 0 0 3 1 0 0 0 0 0 18 2 2087.0971 P15311;E7EQR4 P15311 530 547 EZR Ezrin yes no 3 2.5723E-06 58.159 By MS/MS 1 1.3433 1.355 NaN 1 Median 1.3433 1.355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7577900 3148800 4429100 7577900 3148800 4429100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27575 879 29032 145786 146753;146754 146753 2 QLLTPATGAPKPQGTK ALSAVDMTQREAVAKQLLTPATGAPKPQGT LLTPATGAPKPQGTKIVCRHVKNGDILLLN K Q L T K I 2 0 0 0 0 2 0 2 0 0 2 2 0 0 3 0 3 0 0 0 0 0 16 1 1606.9043 O95602;B9ZVN9 O95602 521 536 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 0.0026276 29.099 By MS/MS 1 0.67231 0.77623 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67231 0.77623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5367400 3095200 2272200 0 0 0 0 0 0 5367400 3095200 2272200 0 0 0 0 0 0 0 0 0 27576 1781 29033 145787 146755 146755 1 QLMETPANEMTPTR WQKGVLFASGQNLARQLMETPANEMTPTRF RQLMETPANEMTPTRFAEIIEKNLKSASSK R Q L T R F 1 1 1 0 0 1 2 0 0 0 1 0 2 0 2 0 3 0 0 0 0 0 14 0 1617.7491 P28838;H0Y9Q1 P28838 201 214 LAP3 Cytosol aminopeptidase yes no 2 8.4409E-08 99.522 By MS/MS By matching 1 2 1.0206 0.98039 105.86 3 Median 1.0206 0.98039 NaN 1 0 Median 0.7689 0.81625 148.96 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10536000 4937100 5599200 9417900 4217600 5200400 1118300 719520 398810 0 0 0 0 0 0 0 0 0 0 0 0 27577 2167 29034 145788;145789;145790 146756;146757 146757 2 QLMGQVLAK SMREVRSCFEDPEWKQLMGQVLAKVTENLR EDPEWKQLMGQVLAKVTENLRVLGEAQTKA K Q L A K V 1 0 0 0 0 2 0 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 986.55829 Q9BQG0;I3L1L3 Q9BQG0 1054 1062 MYBBP1A Myb-binding protein 1A yes no 2 0.0016236 79.469 By MS/MS By MS/MS By matching 1 1 1 1.1334 1.1873 19.85 3 Plateau NaN NaN NaN 0 0 Median 1.1776 1.0008 NaN 1 0 Median 1.1334 1.2086 NaN 1 0 Median 0.97106 0.81271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25741000 11836000 13905000 0 0 0 5997700 2727500 3270200 18898000 8698600 10199000 845570 410140 435430 0 0 0 0 0 0 27578 3789 29035 145791;145792;145793 146758;146759 146758 2 QLMPPPAFPVTGIK SKPASSSGKERERDRQLMPPPAFPVTGIKT RQLMPPPAFPVTGIKTESDERNGSGTLTGS R Q L I K T 1 0 0 0 0 1 0 1 0 1 1 1 1 1 4 0 1 0 0 1 0 0 14 0 1494.8269 Q7Z7F0 Q7Z7F0 519 532 KIAA0907 UPF0469 protein KIAA0907 yes yes 2 0.012463 32.523 By MS/MS By matching 1 1 0.47842 0.48718 1.337 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45419 0.4826 NaN 1 0 Median 0.50393 0.49181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2796800 1890300 906490 0 0 0 0 0 0 2646200 1798000 848240 150540 92297 58245 0 0 0 0 0 0 27579 3256 29036 145794;145795 146760 146760 1 QLNDLWDQIEQAHLELR ILLGGYQSRAMGLMKQLNDLWDQIEQAHLE NDLWDQIEQAHLELRTFEELKKHEDSAIPR K Q L L R T 1 1 1 2 0 3 2 0 1 1 4 0 0 0 0 0 0 1 0 0 0 0 17 0 2120.0651 Q99459 Q99459 734 750 CDC5L Cell division cycle 5-like protein yes yes 3 0.0007651 34.721 By MS/MS By matching 1 1 0.91383 0.87117 28.392 2 Median NaN NaN NaN 0 0 Median 0.82248 0.71271 NaN 1 0 Median 1.0153 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3878700 2333100 1545600 0 0 0 3469500 2108700 1360900 409140 224430 184710 0 0 0 0 0 0 0 0 0 27580 3745 29037 145796;145797 146761 146761 1 QLNYTIGEVPISFVDR SKGYVFQMEMIVRARQLNYTIGEVPISFVD LNYTIGEVPISFVDRVYGESKLGGNEIVSF R Q L D R V 0 1 1 1 0 1 1 1 0 2 1 0 0 1 1 1 1 0 1 2 0 0 16 0 1849.9574 Q5QPK2;H0Y368;O60762 Q5QPK2 246 261 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2 0.00013515 56.225 By MS/MS 1 0.97042 0.91958 NaN 1 Median 0.97042 0.91958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9320400 4568700 4751700 9320400 4568700 4751700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27581 1142 29038 145798 146762 146762 1 QLPAQPPEHAVDGEGFK DSFCDSKEYVAAQLRQLPAQPPEHAVDGEG PAQPPEHAVDGEGFKNTLETSSLNFKVTPD R Q L F K N 2 0 0 1 0 2 2 2 1 0 1 1 0 1 3 0 0 0 0 1 0 0 17 0 1818.8901 Q14151;K7EQU4;K7ERX3 Q14151 172 188 SAFB2 Scaffold attachment factor B2 yes no 3 5.8553E-06 65.716 By MS/MS By MS/MS By MS/MS 1 1 1 0.59443 0.51065 11.331 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47353 0.50664 NaN 1 0 Median 0.59443 0.51065 NaN 1 0 Median 0.60015 0.61885 NaN 1 0 Median NaN NaN NaN 0 0 Median 17458000 12749000 4709700 0 0 0 0 0 0 8410600 6806200 1604300 3509200 2274100 1235100 5538700 3668400 1870300 0 0 0 27582 2859 29039 145799;145800;145801 146763;146764;146765 146765 3 QLPDKWQHDLFDSGFGGGAGVETGGK GGGGRNRPAPYSRPKQLPDKWQHDLFDSGF DSGFGGGAGVETGGKLLVSNLDFGVSDADI K Q L G K L 1 0 0 3 0 2 1 7 1 0 2 2 0 2 1 1 1 1 0 1 0 0 26 1 2702.2725 Q86V81;E9PB61 Q86V81 82 107 ALYREF THO complex subunit 4 yes no 3;4 1.893E-08 41.423 By MS/MS 2 1.0601 1.1069 11.641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0601 1.1069 11.641 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25321000 12932000 12389000 0 0 0 0 0 0 25321000 12932000 12389000 0 0 0 0 0 0 0 0 0 27583 3286 29040 145802;145803 146766;146767;146768;146769 146766 4 QLPHFTSEHIK QMVTQAMWSKDSYLKQLPHFTSEHIKRCTD SYLKQLPHFTSEHIKRCTDKGVESVFDIME K Q L I K R 0 0 0 0 0 1 1 0 2 1 1 1 0 1 1 1 1 0 0 0 0 0 11 0 1335.6935 O75643 O75643 1962 1972 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.051775 14.985 By matching By MS/MS By matching By matching 1 1 1 1 1.1623 1.1246 16.577 4 Median 0.94279 0.88949 NaN 1 0 Median 1.1717 1.0391 NaN 1 0 Median 1.153 1.2838 NaN 1 0 Median 1.3468 1.2172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15514000 6499300 9014600 2020900 1020600 1000300 4837800 1835200 3002600 5728300 2386600 3341700 2927000 1257000 1669900 0 0 0 0 0 0 27584 1688 29041 145804;145805;145806;145807 146770 146770 1 QLPHFTSEHIKR QMVTQAMWSKDSYLKQLPHFTSEHIKRCTD YLKQLPHFTSEHIKRCTDKGVESVFDIMEM K Q L K R C 0 1 0 0 0 1 1 0 2 1 1 1 0 1 1 1 1 0 0 0 0 0 12 1 1491.7946 O75643 O75643 1962 1973 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.0029083 36.284 By MS/MS 1 0.95977 1.1422 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95977 1.1422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2202600 1094400 1108200 0 0 0 0 0 0 2202600 1094400 1108200 0 0 0 0 0 0 0 0 0 27585 1688 29042 145808 146771;146772 146772 2 QLPLVKPYLR RLDHTRAVNYFSKVKQLPLVKPYLRSVQNH FSKVKQLPLVKPYLRSVQNHNNKSVNESLN K Q L L R S 0 1 0 0 0 1 0 0 0 0 3 1 0 0 2 0 0 0 1 1 0 0 10 1 1225.7547 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1448 1457 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 0.00013701 97.798 By MS/MS By MS/MS By MS/MS By matching 5 6 4 1 0.95562 0.94246 15.175 16 Median 0.95365 0.9566 5.3439 5 0 Median 1.0787 1.0298 11.408 6 0 Median 0.66565 0.79501 12.418 4 0 Median 1.1886 1.1475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98999000 51406000 47593000 65294000 33732000 31562000 18683000 9032600 9650500 14682000 8500400 6182000 339460 140780 198680 0 0 0 0 0 0 27586 44 29043 145809;145810;145811;145812;145813;145814;145815;145816;145817;145818;145819;145820;145821;145822;145823;145824 146773;146774;146775;146776;146777;146778;146779;146780;146781;146782 146774 10 QLPPNGDPNFK KAINQQTGAFVEISRQLPPNGDPNFKLFII EISRQLPPNGDPNFKLFIIRGSPQQIDHAK R Q L F K L 0 0 2 1 0 1 0 1 0 0 1 1 0 1 3 0 0 0 0 0 0 0 11 0 1225.6091 Q92945;A0A087WTP3;M0R3J3 Q92945 463 473 KHSRP Far upstream element-binding protein 2 yes no 2 0.0052833 46.39 By MS/MS 1 0.43529 0.47873 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43529 0.47873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3668500 2392700 1275800 0 0 0 0 0 0 3668500 2392700 1275800 0 0 0 0 0 0 0 0 0 27587 3568 29044 145825 146783;146784;146785 146784 3 QLPTLILFQGGK DVSTRYKVSTSPLTKQLPTLILFQGGKEAM LTKQLPTLILFQGGKEAMRRPQIDKKGRAV K Q L G K E 0 0 0 0 0 2 0 2 0 1 3 1 0 1 1 0 1 0 0 0 0 0 12 0 1313.7707 Q9Y320 Q9Y320 216 227 TMX2 Thioredoxin-related transmembrane protein 2 yes yes 2 0.0034874 46.001 By MS/MS By matching 2 2 1.0449 0.97725 8.7997 4 Median 1.0449 1.018 3.4318 2 0 Median 1.0378 0.90321 8.7963 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7874600 3811100 4063500 5000600 2407300 2593300 2874100 1403900 1470200 0 0 0 0 0 0 0 0 0 0 0 0 27588 4404 29045 145826;145827;145828;145829 146786 146786 1 QLPVLDK PTKIPVIIERYKGEKQLPVLDKTKFLVPDH IERYKGEKQLPVLDKTKFLVPDHVNMSELI K Q L D K T 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 7 0 811.48035 H3BTL1;Q9GZQ8;A6NCE7;Q9H492 H3BTL1 43 49 MAP1LC3B;MAP1LC3B2;MAP1LC3A Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3A yes no 2 0.053242 38.792 By MS/MS 1 0.79403 0.64883 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79403 0.64883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 777360 443480 333880 0 0 0 0 0 0 0 0 0 777360 443480 333880 0 0 0 0 0 0 27589 505 29046 145830 146787 146787 1 QLQAAAAHWQQHQQHR EEPQSEDPEEDARLKQLQAAAAHWQQHQQH LQAAAAHWQQHQQHRVGFQYQGIMQKHTQL K Q L H R V 4 1 0 0 0 6 0 0 3 0 1 0 0 0 0 0 0 1 0 0 0 0 16 0 1936.9517 P49750;F8VU51 P49750 382 397 YLPM1 YLP motif-containing protein 1 yes no 4 0.011088 23.138 By MS/MS By matching 1 1 1.0478 1.0327 17.759 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0548 1.1709 NaN 1 0 Median 1.0408 0.91086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1932900 882030 1050900 0 0 0 0 0 0 1681100 787940 893200 251770 94092 157680 0 0 0 0 0 0 27590 2395 29047 145831;145832 146788 146788 1 QLQALSSELAQAR EERVTETQKNERVKKQLQALSSELAQARDE KKQLQALSSELAQARDETKKTQNDVLHAEN K Q L A R D 3 1 0 0 0 3 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1413.7576 P35241;A0A2R8Y5S7;A0A2R8Y4H6 P35241 527 539 RDX Radixin yes no 2 4.2761E-10 174.98 By MS/MS By matching By MS/MS By matching 1 1 1 2 0.84673 0.72957 17.012 5 Median 0.76117 0.72013 NaN 1 0 Median 1.0045 0.8704 NaN 1 0 Median 0.86857 0.87745 NaN 1 0 Median 0.82418 0.65015 16.299 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44259000 24914000 19345000 13166000 7543200 5623100 3326500 1901400 1425100 25646000 14306000 11340000 2120200 1163000 957250 0 0 0 0 0 0 27591 2235 29048 145833;145834;145835;145836;145837 146789;146790;146791;146792 146792 4 QLQDELEMLVER AGDKDKEQELSEEDKQLQDELEMLVERLGE EDKQLQDELEMLVERLGEKDTSLYRPALEE K Q L E R L 0 1 0 1 0 2 3 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 12 0 1501.7446 Q13200;C9JPC0 Q13200 51 62 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 7.8353E-05 140.49 By MS/MS 1 1.0709 0.92565 NaN 1 Median NaN NaN NaN 0 0 Median 1.0709 0.92565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11031000 5392300 5638400 0 0 0 11031000 5392300 5638400 0 0 0 0 0 0 0 0 0 0 0 0 27592 2796 29049 145838 146793;146794 146794 2 QLQDEMLR GQVAKLEAALGEAKKQLQDEMLRRVDAENR ALGEAKKQLQDEMLRRVDAENRLQTMKEEL K Q L L R R 0 1 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1031.507 P02545;H0YAB0;Q3BDU5 P02545 182 189 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.0046283 86.953 By MS/MS 2 0.2201 0.21836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2201 0.21836 NaN 1 1 Median NaN NaN NaN 0 0 Median 59706000 50296000 9409800 0 0 0 0 0 0 0 0 0 0 0 0 59706000 50296000 9409800 0 0 0 27593 1834;3010 29050 145839;145840 146795;146796 146795 2 QLQEELAEHQVPVEK ASDPGVLQEQLATTKQLQEELAEHQVPVEK QLQEELAEHQVPVEKLQKVARDIMEIEGEP K Q L E K L 1 0 0 0 0 3 4 0 1 0 2 1 0 0 1 0 0 0 0 2 0 0 15 0 1775.9054 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4041 4055 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00038745 39.685 By MS/MS 1 0.76849 0.77012 NaN 1 Median 0.76849 0.77012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12533000 6611500 5921100 12533000 6611500 5921100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27594 1220 29051 145841 146797;146798 146798 2 QLQEERPELSESELTR RPVSAMFIFSEEKRRQLQEERPELSESELT LQEERPELSESELTRLLARMWNDLSEKKKA R Q L T R L 0 2 0 0 0 2 5 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 16 1 1942.9596 P17480;E9PKP7;E9PLT2 P17480 424 439 UBTF Nucleolar transcription factor 1 yes no 3 5.7297E-07 88.427 By MS/MS By MS/MS By MS/MS 1 1 1 0.79225 0.91061 6.0699 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79225 0.91543 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75653 0.82198 NaN 1 0 Median 1.0073 0.91061 NaN 1 0 Median 56021000 28999000 27022000 0 0 0 0 0 0 20866000 10757000 10109000 0 0 0 28949000 15566000 13383000 6206500 2676100 3530400 27595 2040 29052 145842;145843;145844 146799;146800;146801;146802 146800 4 QLQEIFENYKK VIESTEAIEAKAALKQLQEIFENYKKEKAE AALKQLQEIFENYKKEKAENEKIQNEQLEK K Q L K K E 0 0 1 0 0 2 2 0 0 1 1 2 0 1 0 0 0 0 1 0 0 0 11 1 1438.7456 P12270 P12270 674 684 TPR Nucleoprotein TPR yes yes 3 0.00021732 61.958 By MS/MS 2 0.93302 1.0696 13.61 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93302 1.0696 13.61 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21499000 11133000 10366000 0 0 0 0 0 0 21499000 11133000 10366000 0 0 0 0 0 0 0 0 0 27596 1978 29053 145845;145846 146803;146804;146805 146805 3 QLQEMLGLSK SKSYVFRGTKDLSAKQLQEMLGLSKVPLTQ DLSAKQLQEMLGLSKVPLTQATRGPQVQQP K Q L S K V 0 0 0 0 0 2 1 1 0 0 3 1 1 0 0 1 0 0 0 0 0 0 10 0 1145.6114 F5H365;Q15436 F5H365 170 179 SEC23A Protein transport protein Sec23A yes no 2 0.025495 35.511 By MS/MS By matching By MS/MS 1 1 1 1.0802 1.0537 7.4676 3 Median 1.0802 1.0306 NaN 1 0 Median 1.3108 1.1842 NaN 1 0 Median 0.99041 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7727200 3706300 4020900 3984800 1869800 2115000 695740 285930 409810 3046700 1550600 1496100 0 0 0 0 0 0 0 0 0 27597 1029 29054 145847;145848;145849 146806;146807 146807 2 QLQEQHYQQYMQQLYQVQLAQQQAALQK QQYPGNYEQQQILIRQLQEQHYQQYMQQLY LYQVQLAQQQAALQKQQEVVVAGSSLPTSS R Q L Q K Q 3 0 0 0 0 13 1 0 1 0 4 1 1 0 0 0 0 0 3 1 0 0 28 0 3461.715 Q9H3P7 Q9H3P7 279 306 ACBD3 Golgi resident protein GCP60 yes yes 3 0.030749 12.346 By MS/MS 1 1.0411 1.0027 NaN 1 Median 1.0411 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2719700 1451600 1268100 2719700 1451600 1268100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27598 3957 29055 145850 146808;146809 146808 2 QLQGFPFYGKPMR FVIFKELGSSTNALRQLQGFPFYGKPMRIQ LRQLQGFPFYGKPMRIQYAKTDSDIISKMR R Q L M R I 0 1 0 0 0 2 0 2 0 0 1 1 1 2 2 0 0 0 1 0 0 0 13 1 1567.797 P08579 P08579 68 80 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 3 0.00049798 51.841 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 1.0823 1.047 29.911 6 Median 1.1267 1.1792 NaN 1 0 Median 1.0479 0.99265 NaN 1 0 Median 0.81691 0.85288 NaN 1 0 Median 1.1178 0.98953 NaN 1 0 Median 1.0411 1.1042 NaN 1 0 Median 2.1991 2.0103 NaN 1 0 Median 36302000 17342000 18960000 7118600 2654500 4464100 362290 195980 166310 10180000 5757800 4422300 267040 145950 121090 18237000 8526700 9710500 136980 61267 75714 27599 1904 29056 145851;145852;145853;145854;145855;145856;145857 146810;146811;146812;146813;146814;146815 146812 6 QLQGPEKEPPKPEQVESR GQEKLHQMWLSWNQKQLQGPEKEPPKPEQV GPEKEPPKPEQVESRALTMFRDIAQQLQAT K Q L S R A 0 1 0 0 0 3 4 1 0 0 1 2 0 0 4 1 0 0 0 1 0 0 18 2 2075.0647 O60664;K7ERZ3 O60664 308 325 PLIN3 Perilipin-3 yes no 4 0.064939 8.8232 By MS/MS 1 0.7942 0.88745 NaN 1 Median 0.7942 0.88745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1367400 787350 580080 1367400 787350 580080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27600 1624 29057 145858 146816 146816 1 QLQLAQEAAQK EARRLRERAEQESARQLQLAQEAAQKRLQA ESARQLQLAQEAAQKRLQAEEKAHAFAVQQ R Q L Q K R 3 0 0 0 0 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1226.6619 Q15149 Q15149 2172 2182 PLEC Plectin yes yes 2 0.00018079 111.06 By MS/MS By matching 1 1 1.3494 1.2226 4.4821 2 Median NaN NaN NaN 0 0 Median 1.3415 1.1845 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3573 1.262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10735000 4365700 6369400 0 0 0 10101000 4147400 5953400 0 0 0 634400 218360 416040 0 0 0 0 0 0 27601 2933 29058 145859;145860 146817;146818 146818 2 QLQLAQEAAQKR EARRLRERAEQESARQLQLAQEAAQKRLQA SARQLQLAQEAAQKRLQAEEKAHAFAVQQK R Q L K R L 3 1 0 0 0 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1382.763 Q15149 Q15149 2172 2183 PLEC Plectin yes yes 2;3 7.9101E-06 116.3 By MS/MS By MS/MS 2 2 1.1405 1.2452 21.985 4 Median 1.0244 1.0525 11.878 2 0 Median NaN NaN NaN 0 0 Median 1.2801 1.4786 12.392 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11992000 5370500 6621100 8459600 3768800 4690800 0 0 0 3532000 1601700 1930300 0 0 0 0 0 0 0 0 0 27602 2933 29059 145861;145862;145863;145864 146819;146820;146821;146822;146823 146821 5 QLQLEAEEQR VPLGRKEAKAKELVRQLQLEAEEQRKQKKR KELVRQLQLEAEEQRKQKKRQSVSGLHRYL R Q L Q R K 1 1 0 0 0 3 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1242.6204 Q8N1G4 Q8N1G4 415 424 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.00046439 120.15 By MS/MS By MS/MS 1 1 1.1893 1.0944 9.1972 2 Median 1.1956 1.1679 NaN 1 0 Median 1.1831 1.0255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8660000 3833200 4826900 4438200 2130900 2307300 4221900 1702300 2519600 0 0 0 0 0 0 0 0 0 0 0 0 27603 3359 29060 145865;145866 146824;146825 146824 2 QLQLEAEEQRK VPLGRKEAKAKELVRQLQLEAEEQRKQKKR ELVRQLQLEAEEQRKQKKRQSVSGLHRYLH R Q L R K Q 1 1 0 0 0 3 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1370.7154 Q8N1G4 Q8N1G4 415 425 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 0.00032663 59.418 By MS/MS By matching 1 1 0.88001 0.9091 6.691 2 Median 0.94865 0.95315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81633 0.86709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7464400 3058200 4406300 4774500 1824900 2949600 0 0 0 2689900 1233300 1456600 0 0 0 0 0 0 0 0 0 27604 3359 29061 145867;145868 146826 146826 1 QLQNIIQATSR ENLLKASFERMDHLRQLQNIIQATSREIMW DHLRQLQNIIQATSREIMWINDCEEEELLY R Q L S R E 1 1 1 0 0 3 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1270.6993 P15924 P15924 271 281 DSP Desmoplakin yes yes 2 0.00018667 106.2 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1 0.74137 0.68969 90.964 8 Median 0.71409 0.70683 NaN 1 0 Median 1.504 1.224 158.43 3 1 Plateau 0.5318 0.57302 22.739 2 1 Median 0.76969 0.66984 NaN 1 0 Median 0.89251 0.93107 NaN 1 0 Median NaN NaN NaN 0 0 Median 42651000 23909000 18743000 7507600 4396200 3111300 13551000 6686300 6864300 14807000 9082000 5724800 1220900 690200 530690 5565500 3054100 2511500 0 0 0 27605 2021 29062 145869;145870;145871;145872;145873;145874;145875;145876 146827;146828;146829;146830;146831;146832 146829 6 QLQNISLAAASGGAK MTVIQWVSDFSERIKQLQNISLAAASGGAK QLQNISLAAASGGAKELKNIHVCLGGLFVP K Q L A K E 4 0 1 0 0 2 0 2 0 1 2 1 0 0 0 2 0 0 0 0 0 0 15 0 1427.7732 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4488 4502 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 3.0856E-09 116.54 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.96786 0.94252 28.9 4 Median NaN NaN NaN 0 0 Median 0.94114 0.83757 NaN 1 1 Median 0.99534 1.0606 NaN 1 0 Median 1.1567 1.1244 NaN 1 0 Median 0.53136 0.59495 NaN 1 0 Median NaN NaN NaN 0 0 Median 56247000 28603000 27644000 0 0 0 16983000 9363100 7620300 33094000 16142000 16952000 3463800 1558100 1905700 2705600 1540300 1165300 0 0 0 27606 2865 29063 145877;145878;145879;145880 146833;146834;146835 146833 3 QLQQAQAAGAEQEVEK GELAKRSERRAEAEKQLQQAQAAGAEQEVE LQQAQAAGAEQEVEKFTKRLVKVTKQHNDE K Q L E K F 4 0 0 0 0 5 3 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 16 0 1726.8486 P39748;F5H1Y3 P39748 110 125 FEN1 Flap endonuclease 1 yes no 2;3 2.5966E-14 174.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 4 1 0.97884 0.88202 14.471 16 Median 0.91059 0.86348 13.043 4 0 Median 1.0478 0.90874 4.8903 3 0 Median 0.94863 0.94443 10.303 4 0 Median 0.99521 0.8692 22.597 4 0 Median NaN NaN NaN 0 0 Median 0.96322 0.80835 NaN 1 0 Median 148300000 73207000 75097000 14808000 7631600 7176100 8637100 4150400 4486700 83012000 40911000 42101000 40221000 19767000 20454000 0 0 0 1626400 747370 879040 27607 2283 29064 145881;145882;145883;145884;145885;145886;145887;145888;145889;145890;145891;145892;145893;145894;145895;145896 146836;146837;146838;146839;146840;146841;146842;146843;146844;146845;146846;146847;146848;146849;146850;146851;146852;146853;146854;146855;146856;146857;146858;146859;146860;146861 146855 26 QLQQLQEGTLQEYQK MKEQMYQDKLASLKRQLQQLQEGTLQEYQK QLQQLQEGTLQEYQKRMKKLDQQYKERIRN R Q L Q K R 0 0 0 0 0 6 2 1 0 0 3 1 0 0 0 0 1 0 1 0 0 0 15 0 1832.9268 Q9H7L9 Q9H7L9 83 97 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 yes yes 2 0.00034351 55.401 By MS/MS 2 1.0007 1.0421 37.48 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0007 1.0421 37.48 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6027900 2493400 3534500 0 0 0 0 0 0 6027900 2493400 3534500 0 0 0 0 0 0 0 0 0 27608 3982 29065 145897;145898 146862 146862 1 QLQQLQQLR ELELQKQLEKGRRLRQLQQLQQLRDSGEKV KGRRLRQLQQLQQLRDSGEKVVEIVKKLES R Q L L R D 0 1 0 0 0 5 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1153.6568 O43290 O43290 511 519 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.00041712 130.77 By matching By MS/MS 1 2 1.0146 1.0768 41.176 3 Median NaN NaN NaN 0 0 Median 1.4551 1.2506 NaN 1 0 Median 0.74085 0.78721 44.301 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15629000 7042400 8586100 0 0 0 1793900 696260 1097600 13835000 6346100 7488500 0 0 0 0 0 0 0 0 0 27609 1563 29066 145899;145900;145901 146863;146864 146863 2 QLREQVNDLFSR PDDDNERLSKVEKARQLREQVNDLFSRKFG KARQLREQVNDLFSRKFGEAIGMGFPVKVP R Q L S R K 0 2 1 1 0 2 1 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 12 1 1503.7794 P78347;A0A494C1K3;A0A087WW90;A0A0D9SF80;A0A494C0I1;A0A494C1N8;Q86UP8;Q6EKJ0 P78347 867 878 GTF2I;GTF2IRD2B;GTF2IRD2 General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 3 0.00045801 53.034 By MS/MS 1 0.73134 0.88947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73134 0.88947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3749000 2534300 1214700 0 0 0 0 0 0 3749000 2534300 1214700 0 0 0 0 0 0 0 0 0 27610 2642 29067 145902 146865 146865 1 QLREYQELMNVK ELEAALQRAKQDMARQLREYQELMNVKLAL MARQLREYQELMNVKLALDIEIATYRKLLE R Q L V K L 0 1 1 0 0 2 2 0 0 0 2 1 1 0 0 0 0 0 1 1 0 0 12 1 1549.7923 P05787;CON__P05787;CON__H-INV:HIT000292931;Q8IWY7 P05787 370 381 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.00051837 50.786 By MS/MS By matching 2 1 1.0635 1.4999 27.446 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1385 1.2359 28.671 2 0 Median 1.0635 0.89703 NaN 1 0 Median 13834000 6264600 7569200 0 0 0 0 0 0 0 0 0 0 0 0 12241000 5377000 6864100 1592700 887590 705150 + 27611 750 29068 145903;145904;145905 146866;146867 146866 2 QLSAQSYGVTSSTAR NTPYQAPVRRQMKAKQLSAQSYGVTSSTAR QLSAQSYGVTSSTARRILQSLEKMSSPLAD K Q L A R R 2 1 0 0 0 2 0 1 0 0 1 0 0 0 0 4 2 0 1 1 0 0 15 0 1554.7638 P49790 P49790 295 309 NUP153 Nuclear pore complex protein Nup153 yes yes 2 9.5738E-08 128.68 By MS/MS 1 1.03 1.127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.03 1.127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8894400 4430500 4463900 0 0 0 0 0 0 8894400 4430500 4463900 0 0 0 0 0 0 0 0 0 27612 2400 29069 145906 146868;146869 146868 2 QLSDAISIIGR NIVHLMLSSPEQIQKQLSDAISIIGREDFP QIQKQLSDAISIIGREDFPQKWPDLLTEMV K Q L G R E 1 1 0 1 0 1 0 1 0 3 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1171.6561 P55060 P55060 110 120 CSE1L Exportin-2 yes yes 2 0.02102 34.721 By matching By MS/MS 2 1 1.2633 1.1069 0.95824 3 Median NaN NaN NaN 0 0 Median 1.2893 1.1037 1.3344 2 0 Median 1.0303 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71106000 30573000 40533000 0 0 0 67888000 29166000 38722000 3218400 1407500 1810900 0 0 0 0 0 0 0 0 0 27613 2493 29070 145907;145908;145909 146870 146870 1 QLSEVFIQLPSR IVDAVIKYKDSSSGRQLSEVFIQLPSRKEL SGRQLSEVFIQLPSRKELPEYYELIRKPVD R Q L S R K 0 1 0 0 0 2 1 0 0 1 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1415.7773 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A0U1RRF5;P51531;F6VDE0;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;B1ALG2;F6T8Q0;B1ALG1;A0A0U1RR09;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51532 1480 1491 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00036748 80.763 By MS/MS By MS/MS 2 1 0.87427 0.9554 13.37 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81044 0.87521 12.397 2 0 Median 1.1908 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10816000 5532900 5283300 0 0 0 0 0 0 10318000 5324000 4994100 498060 208890 289170 0 0 0 0 0 0 27614 366;2433 29071 145910;145911;145912 146871;146872 146871 2 QLSEVFIQLPSRK IVDAVIKYKDSSSGRQLSEVFIQLPSRKEL GRQLSEVFIQLPSRKELPEYYELIRKPVDF R Q L R K E 0 1 0 0 0 2 1 0 0 1 2 1 0 1 1 2 0 0 0 1 0 0 13 1 1543.8722 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28;A0A0U1RRF5;P51531;F6VDE0;A0A0U1RRG6;A0A1W2PS06;A0A0U1RQX3;B1ALF6;B4DNT1;A0A0U1RQU0;A0A0U1RR26;F6XE55;A0A0U1RQW7;A0A0U1RRN2;A0A0U1RR83;B1ALG2;F6T8Q0;B1ALG1;A0A0U1RR09;F6UH26;A0A0A0MSS5;A0A0U1RRF8;A0A0U1RRD6 P51532 1480 1492 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2;3 0.0018181 56.404 By MS/MS 3 0.84512 0.97488 5.3289 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84512 0.97488 5.3289 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22456000 11753000 10703000 0 0 0 0 0 0 22456000 11753000 10703000 0 0 0 0 0 0 0 0 0 27615 366;2433 29072 145913;145914;145915 146873;146874;146875 146875 3 QLSFISPPTPQPK QMMEAATRQIEERKKQLSFISPPTPQPKTP KKQLSFISPPTPQPKTPSSSQPERLPIGNT K Q L P K T 0 0 0 0 0 2 0 0 0 1 1 1 0 1 4 2 1 0 0 0 0 0 13 0 1438.782 O43395 O43395 159 171 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.00038689 85.958 By MS/MS 1 0.59252 0.59906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59252 0.59906 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11984000 4436100 7548400 0 0 0 0 0 0 11984000 4436100 7548400 0 0 0 0 0 0 0 0 0 27616 1569 29073 145916 146876 146876 1 QLSHPANFGPR GKNEETLREEEEEKKQLSHPANFGPRKYCL EEKKQLSHPANFGPRKYCLRECICEVEGQV K Q L P R K 1 1 1 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1222.6207 P82663 P82663 122 132 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 3 0.0058569 50.108 By MS/MS By MS/MS 1 1 1.2492 1.103 24.233 2 Median 0.98952 0.92929 NaN 1 0 Median 1.5771 1.3091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044200 993770 2050400 926160 466830 459340 2118000 526940 1591100 0 0 0 0 0 0 0 0 0 0 0 0 27617 2651 29074 145917;145918 146877;146878 146878 2 QLSILVHPDKNQDDADR IDPEVTDEEIKKRFRQLSILVHPDKNQDDA SILVHPDKNQDDADRAQKAFEAVDKAYKLL R Q L D R A 1 1 1 4 0 2 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 17 1 1962.9759 O75937 O75937 79 95 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 3;4 1.0883E-14 110.97 By matching By MS/MS By MS/MS 1 2 2 0.96569 0.98338 14.055 5 Median NaN NaN NaN 0 0 Median 1.4532 1.283 NaN 1 0 Median 0.91631 0.9917 1.1917 2 0 Median 0.96609 0.91171 0.059612 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78577000 38308000 40268000 0 0 0 6158200 1967600 4190700 52099000 26278000 25821000 20319000 10063000 10257000 0 0 0 0 0 0 27618 1709 29075 145919;145920;145921;145922;145923 146879;146880;146881;146882;146883 146880 5 QLSLDINKLPGEK EEEDKCKPMSYEEKRQLSLDINKLPGEKLG KRQLSLDINKLPGEKLGRVVHIIQSREPSL R Q L E K L 0 0 1 1 0 1 1 1 0 1 3 2 0 0 1 1 0 0 0 0 0 0 13 1 1453.814 O60885;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;A0A0G2JHN8;A0A140T9I1 O60885 617 629 BRD4;BRD2 Bromodomain-containing protein 4;Bromodomain-containing protein 2 no no 3 0.0013297 41.644 By MS/MS By MS/MS 2 2 1.0025 1.1012 43.384 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81311 0.93477 9.6572 2 0 Median NaN NaN NaN 0 0 Median 1.5533 1.6787 46.102 2 0 Median NaN NaN NaN 0 0 Median 11456000 5571700 5884500 0 0 0 0 0 0 9272800 4718700 4554100 0 0 0 2183300 852970 1330300 0 0 0 27619 1638;279 29076 145924;145925;145926;145927 146884;146885;146886;146887 146884 4 QLSQAGSFSDGTHGGLR EAALRCGCLDEDTQRQLSQAGSFSDGTHGG SQAGSFSDGTHGGLRYEQLLALCVTDPETG R Q L L R Y 1 1 0 1 0 2 0 4 1 0 2 0 0 1 0 3 1 0 0 0 0 0 17 0 1716.818 P58107;A0A075B730 P58107 431 447 EPPK1 Epiplakin yes no 3 9.0016E-14 118.71 By MS/MS By MS/MS By matching 2 2 1 1.2329 1.1905 34.3 5 Median 1.2283 1.2027 1.449 2 1 Median 1.266 1.0428 11.179 2 0 Median 1.9524 2.3462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44484000 19869000 24614000 12108000 4436200 7671600 28488000 13876000 14612000 3887800 1557000 2330900 0 0 0 0 0 0 0 0 0 27620 2520 29077 145928;145929;145930;145931;145932 146888;146889;146890;146891;146892 146891 5 QLSSEELEQFQK KRLKGAFKAVMTSIKQLSSEELEQFQKTGT SIKQLSSEELEQFQKTGTIVVEGHELHDED K Q L Q K T 0 0 0 0 0 3 3 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1464.7096 P41252;A0A0A0MSX9;J3KR24 P41252 918 929 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0019024 79.16 By MS/MS 1 2.0456 1.9715 NaN 1 Median 2.0456 1.9715 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21076000 5252600 15823000 21076000 5252600 15823000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27621 2302 29078 145933 146893 146893 1 QLSSGVSEIR SPAVAAPAYSRALSRQLSSGVSEIRHTADR RALSRQLSSGVSEIRHTADRWRVSLDVNHF R Q L I R H 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 10 0 1074.5669 P04792;F8WE04 P04792 80 89 HSPB1 Heat shock protein beta-1 yes no 2 5.599E-05 134.26 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2493 1.1441 12.503 4 Median 1.1127 1.0579 NaN 1 0 Median 1.2207 1.0323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2785 1.3393 NaN 1 0 Median 1.4416 1.2372 NaN 1 0 Median 54112000 26634000 27478000 38672000 19165000 19508000 9558400 4626100 4932300 0 0 0 0 0 0 4442600 2065600 2377000 1438600 777360 661220 27622 1851 29079 145934;145935;145936;145937 146894;146895;146896 146894 3 QLTAHLQDVNR QETVADYQQTIKKYRQLTAHLQDVNRELTN KKYRQLTAHLQDVNRELTNQQEASVERQQQ R Q L N R E 1 1 1 1 0 2 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1293.6789 E7EX90;Q14203;Q6AWB1 E7EX90 505 515 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 3 5.2704E-05 75.566 By MS/MS By matching 1 1 1.1401 1.0917 3.9033 2 Median NaN NaN NaN 0 0 Median 1.336 1.1222 NaN 1 0 Median 0.97294 1.062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8778800 4026000 4752900 0 0 0 6815100 3115700 3699400 1963700 910220 1053500 0 0 0 0 0 0 0 0 0 27623 906 29080 145938;145939 146897 146897 1 QLTANTGHTIHVHYPGNR TRLTQGIGRSQRTLRQLTANTGHTIHVHYP ANTGHTIHVHYPGNRQPNPPLILQRLLGPS R Q L N R Q 1 1 2 0 0 1 0 2 3 1 1 0 0 0 1 0 3 0 1 1 0 0 18 0 2015.0086 Q7Z6Z7 Q7Z6Z7 2552 2569 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3;4 1.5322E-06 74.257 By MS/MS By MS/MS 2 2 0.93462 0.86687 7.8742 3 Median 0.86415 0.84909 11.007 2 0 Median 1.0832 0.86687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39666000 19390000 20276000 19425000 10111000 9314100 20241000 9279200 10962000 0 0 0 0 0 0 0 0 0 0 0 0 27624 3253 29081 145940;145941;145942;145943 146898;146899;146900;146901;146902;146903 146900 6 QLTEEDGVHSVIEENIK YVWDNNKDLAEWLEKQLTEEDGVHSVIEEN TEEDGVHSVIEENIKCISRDYVLKQIRSLV K Q L I K C 0 0 1 1 0 1 4 1 1 2 1 1 0 0 0 1 1 0 0 2 0 0 17 0 1938.9535 Q13085;Q59FY4 Q13085 2277 2293 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 0.045278 20.65 By MS/MS 1 0.80397 0.80262 NaN 1 Median 0.80397 0.80262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6872800 3648100 3224600 6872800 3648100 3224600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27625 2784 29082 145944 146904 146904 1 QLTFEEIAK LCLMEMTFTRPANHRQLTFEEIAKSAKITV RPANHRQLTFEEIAKSAKITVNEVELLVMK R Q L A K S 1 0 0 0 0 1 2 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1077.5706 Q9UNM6;A0A087WUL9;E9PL38 Q9UNM6 290 298 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.0034179 65.246 By MS/MS By matching 1 1 1.1034 0.97964 10.789 2 Median 0.98199 0.90769 NaN 1 0 Median 1.2398 1.0573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16823000 8163300 8660100 15670000 7826800 7843300 1153200 336460 816760 0 0 0 0 0 0 0 0 0 0 0 0 27626 4345 29083 145945;145946 146905;146906 146906 2 QLTNPYGSWR EDVPKDVLEYVVFEKQLTNPYGSWRMHTKI VVFEKQLTNPYGSWRMHTKIVPPWAPPKQP K Q L W R M 0 1 1 0 0 1 0 1 0 0 1 0 0 0 1 1 1 1 1 0 0 0 10 0 1220.5938 A0A0G2JMS5;A0A087WU62;A0A087X2D5;Q9BRJ2 A0A0G2JMS5 201 210 MRPL45 39S ribosomal protein L45, mitochondrial yes no 2 0.025636 49.715 By MS/MS 1 1.0544 0.98431 NaN 1 Median 1.0544 0.98431 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7718100 4132300 3585800 7718100 4132300 3585800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27627 25 29084 145947 146907 146907 1 QLTPPEGSSK ILHTYYKFDYKAHQRQLTPPEGSSKSEQDQ KAHQRQLTPPEGSSKSEQDQAENEGEDSAV R Q L S K S 0 0 0 0 0 1 1 1 0 0 1 1 0 0 2 2 1 0 0 0 0 0 10 0 1042.5295 Q99613;B5ME19 Q99613 522 531 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0013276 66.504 By MS/MS 1 0.95497 0.83592 NaN 1 Median NaN NaN NaN 0 0 Median 0.95497 0.83592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2482900 1219500 1263400 0 0 0 2482900 1219500 1263400 0 0 0 0 0 0 0 0 0 0 0 0 27628 3757 29085 145948 146908;146909 146908 2 QLTQTTHTDKVPGDEDKGINVFR PLGKRDIVEELSALKQLTQTTHTDKVPGDE DKVPGDEDKGINVFRETAKQKLDPAASVTG K Q L F R E 0 1 1 3 0 2 1 2 1 1 1 2 0 1 1 0 4 0 0 2 0 0 23 2 2598.3038 P46013 P46013 2139 2161 MKI67 Antigen KI-67 yes yes 4 0.003173 24.901 By MS/MS 2 0.7324 0.90062 17.038 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7324 0.90062 17.038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15205000 8756500 6448600 0 0 0 0 0 0 15205000 8756500 6448600 0 0 0 0 0 0 0 0 0 27629 2335 29086 145949;145950 146910;146911 146911 2 QLTSYVGSVRPLVTELDPDAPIR KSVYWENTLHTLKQRQLTSYVGSVRPLVTE VRPLVTELDPDAPIRQKMPLDDLDREDEVR R Q L I R Q 1 2 0 2 0 1 1 1 0 1 3 0 0 0 3 2 2 0 1 3 0 0 23 1 2525.349 P57740 P57740 308 330 NUP107 Nuclear pore complex protein Nup107 yes yes 3 0.011296 19.549 By MS/MS 1 0.65982 0.76241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65982 0.76241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11261000 6354500 4906800 0 0 0 0 0 0 11261000 6354500 4906800 0 0 0 0 0 0 0 0 0 27630 2518 29087 145951 146912;146913 146912 2 QLTVQMMQNPQILAALQER VEEEETGEETKLKARQLTVQMMQNPQILAA QMMQNPQILAALQERLDGLVETPTGYIESL R Q L E R L 2 1 1 0 0 5 1 0 0 1 3 0 2 0 1 0 1 0 0 1 0 0 19 0 2211.1504 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;F8VXI6;F8VUX1;F8VVB5 F8W020 37 55 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 3 0.057023 8.6005 By matching By MS/MS By matching 1 2 2 0.96287 0.82941 80.724 5 Median 0.16897 0.16411 NaN 1 0 Median 1.1029 0.95146 19.415 2 0 Median 0.93111 0.93975 33.929 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4942800 2799100 2143800 891240 730180 161060 2470300 1205600 1264700 1581300 863260 718070 0 0 0 0 0 0 0 0 0 27631 1033 29088 145952;145953;145954;145955;145956 146914 146914 1 QLVAEQVTYQR SFRRDNNELLLFILKQLVAEQVTYQRNRFG FILKQLVAEQVTYQRNRFGAQQDTIEVPEK K Q L Q R N 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 11 0 1333.699 P49736;H0Y8E6 P49736 838 848 MCM2 DNA replication licensing factor MCM2 yes no 2 6.4158E-10 176.38 By MS/MS By MS/MS By MS/MS 2 4 2 1.1627 1.1159 23.623 8 Median 0.99589 0.95839 22.789 2 0 Median 1.3236 1.1317 12.989 4 4 Median 0.8136 0.87977 47.37 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72931000 35393000 37538000 14828000 7647600 7180300 41643000 18904000 22739000 16461000 8841700 7618900 0 0 0 0 0 0 0 0 0 27632 2393 29089 145957;145958;145959;145960;145961;145962;145963;145964 146915;146916;146917;146918;146919;146920;146921;146922 146915 8 QLVARPDVVEMHDVTAQDPK KKLRRMNRFTVAELKQLVARPDVVEMHDVT PDVVEMHDVTAQDPKLLVHLKATRNSVPVP K Q L P K L 2 1 0 3 0 2 1 0 1 0 1 1 1 0 2 0 1 0 0 4 0 0 20 1 2247.1318 Q13435;E9PPJ0 Q13435 467 486 SF3B2 Splicing factor 3B subunit 2 yes no 3;4 1.9184E-19 150.69 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.66857 0.72362 31.856 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6969 0.7909 8.1828 2 0 Median 0.63595 0.61115 19.496 2 0 Median 0.67976 0.74794 NaN 1 0 Median 0.40572 0.35533 NaN 1 0 Median 126040000 71796000 54240000 0 0 0 0 0 0 97842000 55015000 42828000 4872800 2698400 2174500 22420000 13428000 8991600 901870 655370 246510 27633 2817 29090 145965;145966;145967;145968;145969;145970 146923;146924;146925;146926;146927;146928 146925 6 QLVDEFQASGGVGER ALQPIVSEEEWAHTKQLVDEFQASGGVGER QLVDEFQASGGVGERLQKGLERRARKTENW K Q L E R L 1 1 0 1 0 2 2 3 0 0 1 0 0 1 0 1 0 0 0 2 0 0 15 0 1590.7638 P43155;B7ZBP5;A6PVN3 P43155 68 82 CRAT Carnitine O-acetyltransferase yes no 2 8.0728E-06 78.692 By MS/MS 1 0.81227 0.7874 NaN 1 Median 0.81227 0.7874 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5499200 3399800 2099400 5499200 3399800 2099400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27634 2323 29091 145971 146929 146929 1 QLVDTTVELANK HFWQHRMALDRRNYRQLVDTTVELANKVGA NYRQLVDTTVELANKVGAAEIISRIVDDLK R Q L N K V 1 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 2 0 0 12 0 1329.714 O75533 O75533 832 843 SF3B1 Splicing factor 3B subunit 1 yes yes 2 4.1361E-06 116.52 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1.1123 1.143 8.3971 6 Plateau NaN NaN NaN 0 0 Median 1.1935 1.0212 NaN 1 0 Median 1.0557 1.123 NaN 1 0 Median 1.2387 1.0727 NaN 1 0 Median 1.0927 1.1279 4.3757 2 1 Median 1.1143 0.91765 NaN 1 0 Median 98846000 46498000 52349000 0 0 0 4793100 2145000 2648100 37790000 18473000 19318000 5633100 2405500 3227700 47796000 22146000 25650000 2834100 1328800 1505300 27635 1683 29092 145972;145973;145974;145975;145976;145977;145978 146930;146931;146932;146933;146934;146935;146936;146937;146938 146933 9 QLVEQVEQIQK IAAKDKLSELQLRVRQLVEQVEQIQKEQNY LRVRQLVEQVEQIQKEQNYQRWREERFRQT R Q L Q K E 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1340.73 Q9BVK6 Q9BVK6 170 180 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 1.3651E-40 223.84 By MS/MS By MS/MS 1 1 1.1851 1.0384 0.28935 2 Median 1.1299 1.0405 NaN 1 0 Median 1.2431 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140680000 62531000 78147000 120690000 54003000 66692000 19984000 8528000 11456000 0 0 0 0 0 0 0 0 0 0 0 0 27636 3856 29093 145979;145980 146939;146940;146941;146942 146940 4 QLVEQVEQIQKEQNYQR IAAKDKLSELQLRVRQLVEQVEQIQKEQNY VEQVEQIQKEQNYQRWREERFRQTSESTNQ R Q L Q R W 0 1 1 0 0 6 3 0 0 1 1 1 0 0 0 0 0 0 1 2 0 0 17 1 2159.0971 Q9BVK6 Q9BVK6 170 186 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 3 1.7385E-06 83.966 By MS/MS By MS/MS 1 1 1.5601 1.5358 10.23 2 Median 1.5829 1.651 NaN 1 0 Median 1.5377 1.4286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23424000 10862000 12562000 18913000 9143500 9769600 4511200 1718600 2792600 0 0 0 0 0 0 0 0 0 0 0 0 27637 3856 29094 145981;145982 146943;146944;146945 146943 3 QLVHSFTEGR SLAQLNLIWQLTDTKQLVHSFTEGRDQGSA LTDTKQLVHSFTEGRDQGSAYANRTALFPD K Q L G R D 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 10 0 1172.5938 A0A0C4DGH0;Q5ZPR3 A0A0C4DGH0 146 155 CD276 CD276 antigen yes no 2 0.0068526 62.823 By MS/MS 1 1.15 1.0052 NaN 1 Median NaN NaN NaN 0 0 Median 1.15 1.0052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1733700 799340 934320 0 0 0 1733700 799340 934320 0 0 0 0 0 0 0 0 0 0 0 0 27638 247 29095 145983 146946 146946 1 QLVNGEVSDER CKRISTITALGHEGKQLVNGEVSDERVAPN HEGKQLVNGEVSDERVAPNFKTEPIETKFY K Q L E R V 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1244.5997 Q96T23;H0YER1;H0YCN2 Q96T23 440 450 RSF1 Remodeling and spacing factor 1 yes no 2 0.0020633 55.567 By MS/MS 1 1.4204 1.4918 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4204 1.4918 NaN 1 0 Median NaN NaN NaN 0 0 Median 2776900 1189000 1587800 0 0 0 0 0 0 0 0 0 0 0 0 2776900 1189000 1587800 0 0 0 27639 3740 29096 145984 146947 146947 1 QLVQDENVR PTVLLGALPLRSLTRQLVQDENVRGVITMN LRSLTRQLVQDENVRGVITMNEEYETRFLC R Q L V R G 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1099.5622 Q8WUK0 Q8WUK0 58 66 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes yes 2 0.029283 36.557 By matching By MS/MS 1 1 0.65211 0.63283 31.965 2 Median NaN NaN NaN 0 0 Median 0.50211 0.50481 NaN 1 0 Median 0.84691 0.79333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1830300 1090100 740220 0 0 0 403660 263290 140370 1426600 826760 599860 0 0 0 0 0 0 0 0 0 27640 3491 29097 145985;145986 146948 146948 1 QLVTETLQQASR KPVTFQATVVSEQTRQLVTETLQQASRVAE QTRQLVTETLQQASRVAEAGNSSIQEGKEE R Q L S R V 1 1 0 0 0 3 1 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 12 0 1372.731 E9PMC9;Q7Z589;H0YCS3 E9PMC9 602 613 C11orf30;EMSY Protein EMSY yes no 2 0.00040768 145.25 By MS/MS 1 1.0078 1.1085 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0078 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6204100 2790100 3414000 0 0 0 0 0 0 6204100 2790100 3414000 0 0 0 0 0 0 0 0 0 27641 966 29098 145987 146949 146949 1 QLYEEEIR ESRLEGLTDEINFLRQLYEEEIRELQSQIS DEINFLRQLYEEEIRELQSQISDTSVVLSM R Q L I R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1078.5295 P05787;CON__P05787;F8VUG2;F8W1U3;CON__Q9H552 P05787 226 233 KRT8 Keratin, type II cytoskeletal 8 no no 2 5.2569E-19 158.03 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 4 3 2 1.1156 1.0822 41.194 14 Median 1.5884 1.5421 57.799 2 1 Median 1.5987 1.3948 15.158 3 2 Median 1.1333 1.0913 1.729 4 3 Linear 1.2695 1.0926 66.083 3 2 Plateau NaN NaN NaN 0 0 Median 0.99854 0.9076 1.4917 2 0 Median 314140000 138520000 175610000 27118000 11888000 15230000 73008000 29504000 43504000 168830000 77220000 91609000 30837000 15570000 15267000 0 0 0 14345000 4339300 10006000 + 27642 750;792 29099 145988;145989;145990;145991;145992;145993;145994;145995;145996;145997;145998;145999;146000;146001 146950;146951;146952;146953;146954;146955;146956;146957;146958;146959;146960;146961;146962;146963;146964 146953 15 QLYEEEIRELQSQISDTSVVLSMDNSR ESRLEGLTDEINFLRQLYEEEIRELQSQIS QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R Q L S R S 0 2 1 2 0 3 4 0 0 2 3 0 1 0 0 5 1 0 1 2 0 0 27 1 3168.5245 P05787;CON__P05787;F8VUG2 P05787 226 252 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.0025446 30.749 By MS/MS 1 1.1355 1.2294 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1355 1.2294 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7401200 4601900 2799300 0 0 0 0 0 0 7401200 4601900 2799300 0 0 0 0 0 0 0 0 0 + 27643 750 29100 146002 146965 146965 1 QLYELDGDPK QPPDHGDWTYEEQFKQLYELDGDPKRKEFL EEQFKQLYELDGDPKRKEFLDDLFSFMQKR K Q L P K R 0 0 0 2 0 1 1 1 0 0 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1176.5663 Q99856;K7EJ04;H0YFY1 Q99856 231 240 ARID3A AT-rich interactive domain-containing protein 3A yes no 2 0.012906 40.724 By MS/MS 1 0.98871 1.0089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98871 1.0089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9647700 4616500 5031300 0 0 0 0 0 0 9647700 4616500 5031300 0 0 0 0 0 0 0 0 0 27644 3772 29101 146003 146966 146966 1 QLYESLMAAHASR TASFAGKIDASQTCKQLYESLMAAHASRDR CKQLYESLMAAHASRDRVIKNCIAQTSAVV K Q L S R D 3 1 0 0 0 1 1 0 1 0 2 0 1 0 0 2 0 0 1 0 0 0 13 0 1475.7191 C9JQ41;H7C525;Q4VC31 C9JQ41 41 53 CCDC58 Coiled-coil domain-containing protein 58 yes no 3 0.0049632 40.552 By MS/MS By MS/MS By MS/MS 1 1 1 1.1083 1.1146 13.939 3 Median 1.2546 1.2372 NaN 1 1 Median 1.1083 0.93874 NaN 1 0 Median 1.0981 1.1146 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9818100 4322600 5495400 5707800 2450200 3257600 2589100 1177300 1411900 1521200 695210 825960 0 0 0 0 0 0 0 0 0 27645 716 29102 146004;146005;146006 146967;146968;146969 146969 3 QLYETTDTTTR DPGRKSLAQLENLCKQLYETTDTTTRLQAE NLCKQLYETTDTTTRLQAEKALVEFTNSPD K Q L T R L 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 5 0 1 0 0 0 11 0 1327.6256 E7ESC6;Q9UIA9;H0YBE1 E7ESC6 18 28 XPO7 Exportin-7 yes no 2 0.00019716 105.4 By MS/MS By matching 1 1 0.85099 0.81129 35.227 2 Median NaN NaN NaN 0 0 Median 1.2171 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59499 0.63241 NaN 1 0 Median NaN NaN NaN 0 0 Median 5114500 3069000 2045500 0 0 0 2565700 1296000 1269700 0 0 0 0 0 0 2548900 1773000 775810 0 0 0 27646 885 29103 146007;146008 146970;146971 146970 2 QLYHLGVVEAYSGLTK NKKLAAQSCALSLVRQLYHLGVVEAYSGLT LYHLGVVEAYSGLTKKKEGETVEPYKVNLS R Q L T K K 1 0 0 0 0 1 1 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 16 0 1776.941 Q08211 Q08211 249 264 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.2829E-59 235.31 By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 1 3 1 4 2 1.4062 1.3633 14.417 14 Median 1.16 1.1543 23.856 3 0 Median 1.5849 1.3546 NaN 1 0 Median 1.2076 1.2819 8.8713 3 0 Median 1.9406 1.6279 NaN 1 0 Median 1.3721 1.4184 12.732 4 0 Median 1.6149 1.3633 0.75166 2 0 Median 186260000 83290000 102970000 11361000 5154000 6207500 4971100 1951900 3019200 133180000 60189000 72995000 766260 224450 541810 35201000 15503000 19698000 772430 268270 504160 27647 2736 29104 146009;146010;146011;146012;146013;146014;146015;146016;146017;146018;146019;146020;146021;146022 146972;146973;146974;146975;146976;146977;146978;146979;146980;146981 146975 10 QLYQILTDFDIR TPALVFEYINNTDFKQLYQILTDFDIRFYM DFKQLYQILTDFDIRFYMYELLKALDYCHS K Q L I R F 0 1 0 2 0 2 0 0 0 2 2 0 0 1 0 0 1 0 1 0 0 0 12 0 1523.7984 P19784;H3BNI9 P19784 124 135 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.00093641 59.067 By MS/MS 1 1.1653 0.99956 NaN 1 Median NaN NaN NaN 0 0 Median 1.1653 0.99956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1201800 523620 678220 0 0 0 1201800 523620 678220 0 0 0 0 0 0 0 0 0 0 0 0 27648 2069 29105 146023 146982 146982 1 QLYQTLTDYDIR TPALVFEHVNNTDFKQLYQTLTDYDIRFYM DFKQLYQTLTDYDIRFYMYEILKALDYCHS K Q L I R F 0 1 0 2 0 2 0 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 12 0 1527.7569 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YDY7 P68400 123 134 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.00030989 98.249 By MS/MS By MS/MS 2 1 1.1836 1.1751 10.621 3 Median 1.2394 1.2302 6.479 2 2 Median NaN NaN NaN 0 0 Median 0.95164 1.042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38624000 17930000 20695000 9550700 4066300 5484400 0 0 0 29074000 13863000 15210000 0 0 0 0 0 0 0 0 0 27649 394 29106 146024;146025;146026 146983;146984;146985 146985 3 QLYTVTMDVHSR GGLVVILLRTMNSLKQLYTVTMDVHSRYRT SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE K Q L S R Y 0 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 2 0 1 2 0 0 12 0 1448.7082 Q9H0A0;A0A087WV29;E9PMU0 Q9H0A0 159 170 NAT10 N-acetyltransferase 10 yes no 3 0.017699 38.3 By MS/MS 1 2.1356 2.3482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1356 2.3482 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13187000 5374500 7812300 0 0 0 0 0 0 13187000 5374500 7812300 0 0 0 0 0 0 0 0 0 27650 3921 29107 146027 146986 146986 1 QLYVLGHEAMK KNGSEADIDEGLYSRQLYVLGHEAMKRLQT LYSRQLYVLGHEAMKRLQTSSVLVSGLRGL R Q L M K R 1 0 0 0 0 1 1 1 1 0 2 1 1 0 0 0 0 0 1 1 0 0 11 0 1287.6645 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 58 68 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 0.0077686 37.344 By MS/MS By MS/MS By matching By matching 2 5 2 1 1.0766 1.1396 17.164 10 Median 1.0642 1.0261 0.072979 2 0 Median 1.4025 1.1847 23.366 5 0 Median 1.0645 1.1396 0.77675 2 0 Median 1.0745 0.97758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89304000 39146000 50158000 42027000 19955000 22072000 42198000 16953000 25246000 4184900 1897200 2287700 894360 341590 552770 0 0 0 0 0 0 27651 2100 29108 146028;146029;146030;146031;146032;146033;146034;146035;146036;146037 146987;146988;146989;146990;146991;146992 146987 6 QLYVLGHEAMKR KNGSEADIDEGLYSRQLYVLGHEAMKRLQT YSRQLYVLGHEAMKRLQTSSVLVSGLRGLG R Q L K R L 1 1 0 0 0 1 1 1 1 0 2 1 1 0 0 0 0 0 1 1 0 0 12 1 1443.7657 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 58 69 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 0.00013848 74.611 By MS/MS 2 1.3552 1.4108 16.745 2 Median 1.3552 1.4108 16.745 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13969000 5316500 8652900 13969000 5316500 8652900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27652 2100 29109 146038;146039 146993;146994 146994 2 QMAAVLLR LLQAIRNTTAAEEARQMAAVLLRRLLSSAF TAAEEARQMAAVLLRRLLSSAFDEVYPALP R Q M L R R 2 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 900.52151 O00410;H0Y8C6;E7ETV3;C9JQT6;C9JZD8;E7ETV8;E7ESZ1;E7EWK4;E7EX05;E7EV12;E7EQT5 O00410 60 67 IPO5 Importin-5 yes no 2 0.022726 44.692 By MS/MS By matching 1 1 1.1439 0.97634 30.39 2 Median NaN NaN NaN 0 0 Median 0.93197 0.78755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4041 1.2104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5170800 2526800 2644000 0 0 0 4682900 2332600 2350300 0 0 0 487860 194130 293730 0 0 0 0 0 0 27653 1460 29110 146040;146041 146995 146995 1 QMADTGKLNTLLQR TNTIMDKMMVAGFKKQMADTGKLNTLLQRA KQMADTGKLNTLLQRAPQCLGKFIEIAARK K Q M Q R A 1 1 1 1 0 2 0 1 0 0 3 1 1 0 0 0 2 0 0 0 0 0 14 1 1587.8403 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4;A0A1W2PPE9 Q00839 545 558 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 4.4296E-07 115.57 By MS/MS By matching By MS/MS 3 1 2 1.1138 1.1763 15.855 6 Median 1.2605 1.3121 15.518 3 2 Median NaN NaN NaN 0 0 Median 0.90598 1.0294 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1248 1.2375 22.641 2 0 Median NaN NaN NaN 0 0 Median 63100000 29522000 33579000 15383000 6743300 8639600 0 0 0 3145700 1674000 1471800 0 0 0 44571000 21104000 23467000 0 0 0 27654 2680 29111 146042;146043;146044;146045;146046;146047 146996;146997;146998;146999;147000;147001 147001 6 QMASQAPAVNTLTESTLK PISAPQAAAAAALRRQMASQAPAVNTLTES SQAPAVNTLTESTLKNVPQVVNVQELKNNP R Q M L K N 3 0 1 0 0 2 1 0 0 0 2 1 1 0 1 2 3 0 0 1 0 0 18 0 1888.9564 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1088 1105 NUP214 Nuclear pore complex protein Nup214 yes no 2 7.7494E-14 139.3 By matching By MS/MS By matching 1 1 1 0.90013 0.81094 20.599 3 Median 0.7387 0.70512 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95747 1.0577 NaN 1 0 Median 0.90013 0.81094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13449000 5973000 7476200 2790100 1005700 1784400 0 0 0 10278000 4794200 5483700 381210 173100 208110 0 0 0 0 0 0 27655 467 29112 146048;146049;146050 147002;147003 147002 2 QMEDGHTLFDYEVR FHVEPGLQRLFYRGKQMEDGHTLFDYEVRL KQMEDGHTLFDYEVRLNDTIQLLVRQSLVL K Q M V R L 0 1 0 2 0 1 2 1 1 0 1 0 1 1 0 0 1 0 1 1 0 0 14 0 1738.7621 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 64 77 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 0.0013993 37.55 By MS/MS By matching 2 1 0.7544 0.72808 18.309 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63993 0.673 25.084 2 0 Median 0.87387 0.72808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7422600 3912000 3510600 0 0 0 0 0 0 7220000 3805600 3414500 202550 106440 96114 0 0 0 0 0 0 27656 20 29113 146051;146052;146053 147004;147005 147004 2 QMEQISQFLQAAER QAPVKKIQASTMAFKQMEQISQFLQAAERY KQMEQISQFLQAAERYGINTTDIFQTVDLW K Q M E R Y 2 1 0 0 0 4 2 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 14 0 1677.8145 P37802;X6RJP6 P37802 89 102 TAGLN2 Transgelin-2 yes no 2;3 4.508E-69 251.34 By MS/MS By MS/MS By MS/MS By matching 8 6 2 1 1.124 0.99029 13.34 17 Median 1.0091 0.97659 13.29 8 0 Median 1.1849 0.98564 5.7637 6 0 Median 1.2087 1.1484 5.369 2 0 Median 0.90237 0.73108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 169200000 75988000 93207000 150280000 67601000 82678000 9873700 4440500 5433200 8965900 3904500 5061400 75755 41556 34199 0 0 0 0 0 0 27657 2269 29114;29115 146054;146055;146056;146057;146058;146059;146060;146061;146062;146063;146064;146065;146066;146067;146068;146069;146070 147006;147007;147008;147009;147010;147011;147012;147013;147014;147015;147016;147017;147018;147019;147020 147017 1018 15 QMEVAQANR AETKAHAKAIEMELRQMEVAQANRHMSLLT IEMELRQMEVAQANRHMSLLTAFMPDSFLR R Q M N R H 2 1 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1045.4975 E7EX90;Q14203;Q6AWB1 E7EX90 558 566 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.006443 54.549 By MS/MS By matching 1 1 1.2103 1.0464 24.106 2 Median NaN NaN NaN 0 0 Median 1.0273 0.88238 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4259 1.2408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2040500 1286300 754220 0 0 0 1848800 1199000 649730 0 0 0 191760 87276 104480 0 0 0 0 0 0 27658 906 29116 146071;146072 147021 147021 1 QMFEGEVASLEALR AGPVFVKVNRRTQARQMFEGEVASLEALRS RQMFEGEVASLEALRSTGLVRVPRPMKVID R Q M L R S 2 1 0 0 0 1 3 1 0 0 2 0 1 1 0 1 0 0 0 1 0 0 14 0 1578.7712 Q9H479 Q9H479 50 63 FN3K Fructosamine-3-kinase yes yes 2 0.0022275 44.188 By MS/MS By matching 1 1 1.2037 1.0818 31.606 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9021 0.86511 NaN 1 0 Median 1.6062 1.3527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1495300 801870 693450 0 0 0 0 0 0 1371000 748610 622400 124320 53264 71054 0 0 0 0 0 0 27659 3962 29117 146073;146074 147022;147023 147023 2 QMFLTQTDTGDDR KDVDFMYVELIQRCKQMFLTQTDTGDDRVY CKQMFLTQTDTGDDRVYQMPSFLQSVASVL K Q M D R V 0 1 0 3 0 2 0 1 0 0 1 0 1 1 0 0 3 0 0 0 0 0 13 0 1526.6671 P78527 P78527 394 406 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.4963E-22 201.75 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1.1081 1.0204 11.547 10 Median 1.0238 0.99702 15.845 3 0 Median 1.336 1.0987 1.897 2 0 Median 0.87483 0.91586 3.6 3 0 Median 1.2892 1.1223 10.186 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95755000 47427000 48328000 34844000 18337000 16507000 15161000 6479200 8681500 42222000 21135000 21088000 3527800 1476500 2051400 0 0 0 0 0 0 27660 2647 29118;29119 146075;146076;146077;146078;146079;146080;146081;146082;146083;146084 147024;147025;147026;147027;147028;147029;147030;147031;147032;147033;147034;147035;147036;147037 147028 1334 14 QMGVTEWSVNGSPIDTLR ENRKGLSSHARSHLRQMGVTEWSVNGSPID VTEWSVNGSPIDTLREILKKKSKPCLIKKE R Q M L R E 0 1 1 1 0 1 1 2 0 1 1 0 1 0 1 2 2 1 0 2 0 0 18 0 1988.9626 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 433 450 WIZ Protein Wiz yes no 2 0.019918 35.737 By MS/MS 1 1.1263 1.223 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1263 1.223 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1473800 654770 819050 0 0 0 0 0 0 1473800 654770 819050 0 0 0 0 0 0 0 0 0 27661 656 29120 146085 147038 147038 1 QMHWPPG GQSVYHVHLHVLGGRQMHWPPG________ HLHVLGGRQMHWPPG_______________ R Q M P G - 0 0 0 0 0 1 0 1 1 0 0 0 1 0 2 0 0 1 0 0 0 0 7 0 851.37484 P49773 P49773 120 126 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 2 0.055869 50.31 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16065000 0 0 16065000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27662 2399 29121 146086 147039 147039 1 QMLDDFGPHR CALYASEEEIGQLVKQMLDDFGPHRYIANL GQLVKQMLDDFGPHRYIANLGHGLYPDMDP K Q M H R Y 0 1 0 2 0 1 0 1 1 0 1 0 1 1 1 0 0 0 0 0 0 0 10 0 1214.5502 A0A494C0Q8;A0A494C085;P06132;A0A494BZY8;A0A1B0GVZ4 A0A494C0Q8 288 297 UROD Uroporphyrinogen decarboxylase yes no 3 0.025111 33.961 By MS/MS 1 1.1141 1.1098 NaN 1 Median 1.1141 1.1098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3446600 1788700 1657900 3446600 1788700 1657900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27663 458 29122 146087 147040 147040 1 QMLDPANYGTGMER AGDGKSIKAFKESAKQMLDPANYGTGMERW KQMLDPANYGTGMERWPRTPKEEAQSLEDL K Q M E R W 1 1 1 1 0 1 1 2 0 0 1 0 2 0 1 0 1 0 1 0 0 0 14 0 1581.6916 P46013 P46013 2048 2061 MKI67 Antigen KI-67 yes yes 2 0.00014046 80.763 By MS/MS 2 0.90645 0.98428 6.6082 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90645 0.98428 6.6082 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10609000 5369100 5239800 0 0 0 0 0 0 10609000 5369100 5239800 0 0 0 0 0 0 0 0 0 27664 2335 29123 146088;146089 147041;147042 147042 2 QMLLNVEANSAK AVKNEEIQSFIYSLKQMLLNVEANSAKVQE SLKQMLLNVEANSAKVQEDLEAEFQSLFSL K Q M A K V 2 0 2 0 0 1 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 0 1316.6758 M0R366;Q9BTV5;M0R1R0;M0R2F6 M0R366 31 42 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 2 0.0025897 74.841 By MS/MS 1 0.70818 0.71007 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70818 0.71007 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5178000 2669300 2508600 0 0 0 0 0 0 5178000 2669300 2508600 0 0 0 0 0 0 0 0 0 27665 1438 29124 146090 147043 147043 1 QMLPLNTNIR EQFVTLFTLTMMQLKQMLPLNTNIRLAYSN MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQ K Q M I R L 0 1 2 0 0 1 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 10 0 1198.6492 O14980 O14980 296 305 XPO1 Exportin-1 yes yes 2 0.0025181 74.173 By MS/MS By MS/MS By matching 2 1 1 0.80321 0.73087 6.6188 4 Median 0.75791 0.73087 4.1358 2 2 Median 0.82637 0.69197 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91699 0.80286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27171000 14541000 12630000 17624000 9235600 8388800 9279600 5149500 4130100 0 0 0 267090 155770 111330 0 0 0 0 0 0 27666 1510 29125 146091;146092;146093;146094 147044;147045;147046 147045 3 QMNPFIEDILNR RTAYLFSRFVKSLNKQMNPFIEDILNRIQD LNKQMNPFIEDILNRIQDLLELSPPENGHQ K Q M N R I 0 1 2 1 0 1 1 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 12 0 1488.7395 O43592 O43592 558 569 XPOT Exportin-T yes yes 2 0.053644 25.386 By MS/MS 1 0.99403 1.0039 NaN 1 Median 0.99403 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1018200 514200 503970 1018200 514200 503970 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27667 1576 29126 146095 147047 147047 1 QMNPHIR DVTKLKSDTAAAAVRQMNPHIRVTSHQNRV DTAAAAVRQMNPHIRVTSHQNRVGPDTERI R Q M I R V 0 1 1 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 7 0 894.4494 P22314 P22314 538 544 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.025249 54.525 By MS/MS 2 1.1974 1.052 5.7047 2 Median NaN NaN NaN 0 0 Median 1.1974 1.052 5.7047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3311900 1547600 1764300 0 0 0 3311900 1547600 1764300 0 0 0 0 0 0 0 0 0 0 0 0 27668 2100 29127 146096;146097 147048;147049 147048 2 QMQSSFTSSEQELER NKWKVKVDESHKTIKQMQSSFTSSEQELER QMQSSFTSSEQELERLRSENKDIENLRRER K Q M E R L 0 1 0 0 0 3 3 0 0 0 1 0 1 1 0 4 1 0 0 0 0 0 15 0 1785.7839 Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2 1177 1191 KTN1 Kinectin yes no 2 5.4729E-10 161.99 By MS/MS By matching By MS/MS 1 1 1 1.5959 1.565 20.137 3 Plateau 1.6631 1.565 NaN 1 0 Median 1.2516 1.0848 NaN 1 0 Median 1.3688 1.5058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14508000 5515400 8992200 8609600 3007400 5602300 1343700 579870 763780 4554400 1928200 2626200 0 0 0 0 0 0 0 0 0 27669 3280 29128 146098;146099;146100 147050;147051 147050 2 QMSLLLR LIIYDDLSKQAVAYRQMSLLLRRPPGREAY SKQAVAYRQMSLLLRRPPGREAYPGDVFYL R Q M L R R 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 7 0 859.49496 P25705 P25705 323 329 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.013989 75.311 By MS/MS By matching 1 1 0.86756 0.86795 8.9254 2 Median 0.97473 0.9245 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77217 0.81487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18452000 9654000 8798300 17423000 9125300 8297600 0 0 0 1029300 528630 500640 0 0 0 0 0 0 0 0 0 27670 2135 29129 146101;146102 147052;147053 147053 2 QMTDVLLTPATDALK ELDDKSISDMWTMVKQMTDVLLTPATDALK QMTDVLLTPATDALKNRSSVEVRMEFVRQA K Q M L K N 2 0 0 2 0 1 0 0 0 0 3 1 1 0 1 0 3 0 0 1 0 0 15 0 1615.8491 Q8N1F7;H3BVG0;H3BP95;H3BMX0;H3BPA9 Q8N1F7 229 243 NUP93 Nuclear pore complex protein Nup93 yes no 2 1.4452E-09 105.13 By MS/MS 2 1.0053 1.0996 12.86 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0053 1.0996 12.86 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11507000 5985800 5520900 0 0 0 0 0 0 11507000 5985800 5520900 0 0 0 0 0 0 0 0 0 27671 3356 29130 146103;146104 147054;147055;147056 147055 3 QMVEHGGFYR DMDKYGTQRVISFIRQMVEHGGFYRTSDQT ISFIRQMVEHGGFYRTSDQTWVKLERIQFV R Q M Y R T 0 1 0 0 0 1 1 2 1 0 0 0 1 1 0 0 0 0 1 1 0 0 10 0 1222.5553 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2685 2694 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.00039551 78.334 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0118 0.92763 23.362 7 Median 1.0178 1.022 5.5108 2 0 Median 0.96775 0.77465 21.241 3 1 Median 1.0674 1.1422 NaN 1 0 Median 1.0657 0.92763 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41310000 21300000 20011000 9180500 4385100 4795400 24817000 13459000 11358000 5828500 2652500 3176100 1483900 802730 681130 0 0 0 0 0 0 27672 2865 29131 146105;146106;146107;146108;146109;146110;146111 147057;147058;147059;147060;147061;147062;147063;147064;147065 147059 9 QMVEILHK FMKGTPQEPRCGFSKQMVEILHKHNIQFSS PRCGFSKQMVEILHKHNIQFSSFDIFSDEE K Q M H K H 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 996.54264 O76003 O76003 164 171 GLRX3 Glutaredoxin-3 yes yes 2 0.023052 44.447 By matching By MS/MS 1 1 1.2378 1.1099 9.9208 2 Median 1.2745 1.1906 NaN 1 0 Median 1.2023 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9279200 4346800 4932400 6105400 2942600 3162800 3173800 1404200 1769600 0 0 0 0 0 0 0 0 0 0 0 0 27673 1715 29132 146112;146113 147066 147066 1 QMVETELK NKGGEDKLKMIREYRQMVETELKLICCDIL KMIREYRQMVETELKLICCDILDVLDKHLI R Q M L K L 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 8 0 976.48993 P62258;K7EIT4 P62258 87 94 YWHAE 14-3-3 protein epsilon yes no 2 0.012155 58.782 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 1.1095 1.036 30.446 8 Median 1.0429 0.97367 8.9675 2 0 Median 1.3723 1.1519 39.263 3 2 Median 1.0489 0.99707 5.2172 2 0 Median 0.90808 0.76549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68140000 31290000 36850000 41554000 19532000 22022000 14157000 5892000 8264600 9663500 4384900 5278600 2765500 1480600 1284900 0 0 0 0 0 0 27674 2576 29133 146114;146115;146116;146117;146118;146119;146120;146121 147067;147068;147069;147070;147071;147072 147069 6 QMVIDVLHPGK IRTRKFMTNRLLQRKQMVIDVLHPGKATVP LQRKQMVIDVLHPGKATVPKTEIREKLAKM K Q M G K A 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1235.6696 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847 E7ETK0 22 32 RPS24 40S ribosomal protein S24 yes no 2;3 0.00026466 73.233 By MS/MS By MS/MS By matching 2 2 1 0.97212 0.91547 40.035 5 Median 0.96246 0.90651 1.391 2 0 Median 1.2252 1.1139 22.092 2 0 Median 0.45758 0.43866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50127000 26882000 23245000 43986000 23581000 20405000 3507900 1552600 1955300 2633000 1748000 885010 0 0 0 0 0 0 0 0 0 27675 387 29134 146122;146123;146124;146125;146126 147073;147074;147075;147076 147075 4 QNALLEQQVR RKNHTHQQDIDDLKRQNALLEQQVRALEKA DDLKRQNALLEQQVRALEKARSSAQLQTNY R Q N V R A 1 1 1 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1197.6466 G3V5L1;P61244;G3V570 G3V5L1 55 64 MAX Protein max yes no 2 0.004195 54.066 By matching By MS/MS 1 1 1.4781 1.3828 10.034 2 Median NaN NaN NaN 0 0 Median 1.4101 1.288 NaN 1 0 Median 1.5493 1.4844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11640000 4438100 7201800 0 0 0 6755600 2645400 4110300 4884300 1792700 3091500 0 0 0 0 0 0 0 0 0 27676 1119 29135 146127;146128 147077 147077 1 QNCDQFEK DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ EPQNLIKQNCDQFEKLGEYGFQNALIVRYT K Q N E K L 0 0 1 1 1 2 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 8 0 1067.4342 CON__P02769 CON__P02769 413 420 yes yes 2 0.043248 54.611 By MS/MS 1 0.10116 0.087306 NaN 1 Median NaN NaN NaN 0 0 Median 0.10116 0.087306 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1321200 1263000 58175 0 0 0 1321200 1263000 58175 0 0 0 0 0 0 0 0 0 0 0 0 + 27677 746 29136 146129 147078 147078 1 QNDQVSFASLVEELKK ENSSLTKEVQDLKAKQNDQVSFASLVEELK NDQVSFASLVEELKKVIHEKDGKIKSVEEL K Q N K K V 1 0 1 1 0 2 2 0 0 0 2 2 0 1 0 2 0 0 0 2 0 0 16 1 1833.9472 Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 Q86UP2 786 801 KTN1 Kinectin yes no 3 0.025135 15.392 By MS/MS 1 1.16 1.0826 NaN 1 Median NaN NaN NaN 0 0 Median 1.16 1.0826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3150700 1493800 1656900 0 0 0 3150700 1493800 1656900 0 0 0 0 0 0 0 0 0 0 0 0 27678 3280 29137 146130 147079 147079 1 QNEEFRPFIR SLMEDSDDGPSLPTKQNEEFRPFIRRLPEF SLPTKQNEEFRPFIRRLPEFKFWHAATKGI K Q N I R R 0 2 1 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 10 1 1334.6731 O15258;Q5T092;A0A0A0MR06;Q5T091 O15258 105 114 RER1 Protein RER1 yes no 3 0.00012811 77.677 By MS/MS By MS/MS 2 1 0.98363 1.0519 8.181 3 Median 0.94023 1.0136 5.2465 2 0 Median 1.227 1.15 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14313000 6986600 7326600 8933600 4533500 4400200 5379600 2453200 2926400 0 0 0 0 0 0 0 0 0 0 0 0 27679 1533 29138 146131;146132;146133 147080;147081;147082 147080 3 QNEFSVVR VKFTVHTKSSLPNFKQNEFSVVRQHEEFIW SSLPNFKQNEFSVVRQHEEFIWLHDSFVEN K Q N V R Q 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 977.49304 A0A0A0MRI2;Q9UNH7;G3V5U2;H0YJF8;G3V4Z5 A0A0A0MRI2 73 80 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 2 0.075607 46.426 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27680 161 29139 146134 147083 147083 1 QNEKEEQQLQGNINELK NSMQEQLIQAQNTLKQNEKEEQQLQGNINE EKEEQQLQGNINELKQSSEQKKKQIEALQG K Q N L K Q 0 0 3 0 0 4 4 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 17 1 2041.0076 Q15075 Q15075 949 965 EEA1 Early endosome antigen 1 yes yes 3 0.0020877 27.496 By MS/MS By MS/MS 1 1 2.1434 2.0528 133.44 2 Median 5.5473 5.2737 NaN 1 1 Median 0.82818 0.79906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24770000 4758400 20011000 20582000 3177000 17405000 4188000 1581400 2606500 0 0 0 0 0 0 0 0 0 0 0 0 27681 2926 29140 146135;146136 147084;147085 147085 2 QNIGVATFIGLDK DSIDIAQECVNFLKRQNIGVATFIGLDKMA KRQNIGVATFIGLDKMAVWAKKMTEIQTPE R Q N D K M 1 0 1 1 0 1 0 2 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 0 1374.7507 Q9NTJ3;E9PD53 Q9NTJ3 661 673 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0066154 38.021 By MS/MS By MS/MS By matching 1 1 1 1.2419 1.2428 32.251 3 Plateau 1.2914 1.2428 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0669 1.1491 NaN 1 0 Median 0.74004 0.6864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6121400 2714000 3407500 4062200 1798000 2264200 0 0 0 1950000 855810 1094100 109240 60135 49106 0 0 0 0 0 0 27682 4108 29141 146137;146138;146139 147086;147087 147086 2 QNINLSAPIMSR ANPISGHYDRSKSLKQNINLSAPIMSRFDL SLKQNINLSAPIMSRFDLFFILVDECNEVT K Q N S R F 1 1 2 0 0 1 0 0 0 2 1 0 1 0 1 2 0 0 0 0 0 0 12 0 1342.7027 Q14566 Q14566 518 529 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0023826 76.143 By MS/MS 1 0.64926 0.68901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64926 0.68901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12172000 6709400 5462600 0 0 0 0 0 0 12172000 6709400 5462600 0 0 0 0 0 0 0 0 0 27683 2881 29142 146140 147088 147088 1 QNISPDKIPWSALK CDTVDTWLDDTAKGRQNISPDKIPWSALKT RQNISPDKIPWSALKTLMAQSIYGGRVDNE R Q N L K T 1 0 1 1 0 1 0 0 0 2 1 2 0 0 2 2 0 1 0 0 0 0 14 1 1595.8671 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4231 4244 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0056284 28.986 By MS/MS By MS/MS 1 1 0.81987 0.91085 14.72 2 Median 0.7534 0.82081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8922 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26650000 14689000 11961000 10911000 6038500 4872600 0 0 0 15738000 8650100 7088400 0 0 0 0 0 0 0 0 0 27684 2865 29143 146141;146142 147089;147090;147091;147092 147091 4 QNKPTGFALGSIEGR PLKHQHRCVAIFKDKQNKPTGFALGSIEGR QNKPTGFALGSIEGRVAIHYINPPNPAKDN K Q N G R V 1 1 1 0 0 1 1 3 0 1 1 1 0 1 1 1 1 0 0 0 0 0 15 1 1573.8213 P78406;E9PQ57 P78406 225 239 RAE1 mRNA export factor yes no 2;3 5.1979E-05 76.759 By MS/MS By MS/MS By MS/MS 2 2 2 0.98882 1.0706 13.391 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93995 1.0726 3.7008 2 0 Median 0.96254 0.84629 6.9932 2 1 Median 1.0286 1.0991 0.2901 2 0 Median NaN NaN NaN 0 0 Median 70936000 36698000 34238000 0 0 0 0 0 0 63708000 33233000 30476000 1946700 918980 1027700 5281100 2546300 2734800 0 0 0 27685 2645 29144 146143;146144;146145;146146;146147;146148 147093;147094;147095;147096;147097;147098 147094 6 QNLAEMGLAVDPNR CSHIRHAWDHAKSVRQNLAEMGLAVDPNRA RQNLAEMGLAVDPNRAVPLRKRKVKAMEVD R Q N N R A 2 1 2 1 0 1 1 1 0 0 2 0 1 0 1 0 0 0 0 1 0 0 14 0 1526.7511 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1;D6RC60 D6RIC3 51 64 NOP16 Nucleolar protein 16 yes no 2 0.0036107 44.425 By MS/MS 1 0.94438 0.94677 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94438 0.94677 NaN 1 0 Median NaN NaN NaN 0 0 Median 7167500 3657300 3510200 0 0 0 0 0 0 0 0 0 0 0 0 7167500 3657300 3510200 0 0 0 27686 136 29145 146149 147099 147099 71 1 QNLDALLNQLK MKEQPWVSVQPRKLRQNLDALLNQLKSFPA RKLRQNLDALLNQLKSFPARLRQYASYEFV R Q N L K S 1 0 2 1 0 2 0 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 11 0 1268.7089 Q14204 Q14204 1361 1371 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.7398E-10 177.7 By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1.1465 1.0823 5.2785 6 Median 1.134 1.1375 NaN 1 0 Median 1.159 1.0343 NaN 1 0 Median 0.9675 1.0531 8.934 2 0 Median 1.1732 1.0823 1.8588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63872000 29214000 34659000 17727000 7958600 9768900 30109000 13697000 16412000 15074000 7124700 7949400 962150 433260 528890 0 0 0 0 0 0 27687 2865 29146 146150;146151;146152;146153;146154;146155 147100;147101;147102;147103;147104;147105 147105 6 QNLEGDHSDAPMETETSFK IHGIFSVASASVIEKQNLEGDHSDAPMETE GDHSDAPMETETSFKNENKDNMDKMQVDQE K Q N F K N 1 0 1 2 0 1 3 1 1 0 1 1 1 1 1 2 2 0 0 0 0 0 19 0 2134.9113 O95757;E9PDE8;D6RJ96 O95757 501 519 HSPA4L Heat shock 70 kDa protein 4L yes no 3 0.00059792 30.956 By MS/MS 1 1.0899 0.96213 NaN 1 Median NaN NaN NaN 0 0 Median 1.0899 0.96213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2391000 1120400 1270600 0 0 0 2391000 1120400 1270600 0 0 0 0 0 0 0 0 0 0 0 0 27688 1790 29147 146156 147106;147107 147106 2 QNLFLGSLTSR QEEQQRLAELSKSNKQNLFLGSLTSRLWPR KSNKQNLFLGSLTSRLWPRSKQP_______ K Q N S R L 0 1 1 0 0 1 0 1 0 0 3 0 0 1 0 2 1 0 0 0 0 0 11 0 1234.667 Q3ZCQ8;M0R0C3;M0R2F8 Q3ZCQ8 335 345 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.0028345 75.378 By MS/MS 1 1.1938 1.1833 NaN 1 Median 1.1938 1.1833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6034700 2643200 3391500 6034700 2643200 3391500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27689 3016 29148 146157 147108 147108 1 QNLFTTWSHHLQQANIQFR AAFIAYAGYFDQQMRQNLFTTWSHHLQQAN TTWSHHLQQANIQFRTDIARTEYLSNADER R Q N F R T 1 1 2 0 0 4 0 0 2 1 2 0 0 2 0 1 2 1 0 0 0 0 19 0 2368.1825 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3526 3544 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 4 0.055219 8.7088 By MS/MS By matching 1 2 1.0889 1.1031 11.254 3 Median 1.0889 1.1031 NaN 1 0 Median 1.2166 1.0562 15.515 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4402200 1859000 2543200 2799300 1233500 1565800 1602900 625520 977360 0 0 0 0 0 0 0 0 0 0 0 0 27690 2865 29149 146158;146159;146160 147109 147109 1 QNLLSQSHAYQQFLR LDTGWNELHKMWENRQNLLSQSHAYQQFLR QNLLSQSHAYQQFLRDTKQAEAFLNNQEYV R Q N L R D 1 1 1 0 0 4 0 0 1 0 3 0 0 1 0 2 0 0 1 0 0 0 15 0 1831.9329 Q01082;A0A087WUZ3 Q01082 1162 1176 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.9336E-19 183.33 By matching By MS/MS By matching By MS/MS 3 3 1 1 1.0987 1.0157 10.237 8 Median NaN NaN NaN 0 0 Median 1.3679 1.1261 7.817 3 0 Plateau 0.91465 0.99707 11.187 3 0 Median 1.1151 0.98248 NaN 1 0 Median 1.1071 1.1628 NaN 1 0 Median NaN NaN NaN 0 0 Median 94472000 47842000 46630000 0 0 0 9938300 4592500 5345800 79976000 41301000 38675000 733350 342420 390930 3824700 1606100 2218600 0 0 0 27691 2681 29150 146161;146162;146163;146164;146165;146166;146167;146168 147110;147111;147112;147113;147114;147115 147112 6 QNLLSVGDYR LKMKPGRPRIKKDEKQNLLSVGDYRHRRTE KKDEKQNLLSVGDYRHRRTEQEEDEELLTE K Q N Y R H 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1163.5935 O60264 O60264 133 142 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00036818 107.57 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0362 1.0351 12.732 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97924 1.0767 NaN 1 0 Median 1.4247 1.2181 NaN 1 0 Median 0.95832 0.99512 NaN 1 0 Median 1.0966 0.90124 NaN 1 0 Median 20155000 9872700 10282000 0 0 0 0 0 0 12847000 6284500 6562900 724360 269340 455010 5908900 3057100 2851800 673960 261710 412250 27692 1608 29151 146169;146170;146171;146172 147116;147117;147118;147119 147116 4 QNLSQFEAQAR KVLNGEKVDVRPATRQNLSQFEAQARKREC PATRQNLSQFEAQARKRECVRVPRGGIPPR R Q N A R K 2 1 1 0 0 3 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 11 0 1290.6317 Q8N684;F5H669;F5H6M0;F5H047;J3QT54 Q8N684 163 173 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.00011507 132.01 By MS/MS 1 1.1015 1.0892 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1015 1.0892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33501000 16086000 17415000 0 0 0 0 0 0 33501000 16086000 17415000 0 0 0 0 0 0 0 0 0 27693 3385 29152 146173 147120 147120 1 QNMGPSGQTHPPPQTLPR TERQWVAAGGHITFKQNMGPSGQTHPPPQT GPSGQTHPPPQTLPRSKSPSGQKRSRSRSP K Q N P R S 0 1 1 0 0 3 0 2 1 0 1 0 1 0 5 1 2 0 0 0 0 0 18 0 1941.9479 Q9NTZ6 Q9NTZ6 393 410 RBM12 RNA-binding protein 12 yes yes 3 0.046731 19.819 By MS/MS 1 0.54322 0.58083 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54322 0.58083 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1892200 1193600 698520 0 0 0 0 0 0 1892200 1193600 698520 0 0 0 0 0 0 0 0 0 27694 4111 29153 146174 147121 147121 1 QNPFWWTHQR GWRVRTDFKQYQVLKQNPFWWTHQRHDGKL YQVLKQNPFWWTHQRHDGKLWNLNNYRTDM K Q N Q R H 0 1 1 0 0 2 0 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 10 0 1398.6582 Q6P2Q9;I3L3Z8 Q6P2Q9 1450 1459 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00036818 87.476 By matching By matching By MS/MS By matching By matching 2 2 2 2 2 1.0016 1.0441 22.796 10 Median 1.1612 1.1633 7.2973 2 0 Median 0.96595 0.82677 39.804 2 0 Median 0.75654 0.82816 33.918 2 0 Median 1.1074 0.96939 12.421 2 0 Median 0.98731 1.0352 0.062269 2 0 Median NaN NaN NaN 0 0 Median 27075000 13778000 13296000 3173500 1436100 1737400 1624600 823100 801540 16983000 8925800 8057000 509080 238790 270290 4784500 2354400 2430100 0 0 0 27695 3157 29154 146175;146176;146177;146178;146179;146180;146181;146182;146183;146184 147122;147123;147124;147125 147124 4 QNQFYDTQVIKQENESGYER YSGPDGHYAMDNITRQNQFYDTQVIKQENE DTQVIKQENESGYERRPLEMEQQQAYRPEM R Q N E R R 0 1 2 1 0 4 3 1 0 1 0 1 0 1 0 1 1 0 2 1 0 0 20 1 2475.1302 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0QYZ0;M0QZV6;M0R0K8;M0R203 Q9BUJ2 107 126 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 2.2018E-12 98.165 By MS/MS 1 0.69908 0.76895 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69908 0.76895 NaN 1 0 Median NaN NaN NaN 0 0 Median 10379000 6007400 4371600 0 0 0 0 0 0 0 0 0 0 0 0 10379000 6007400 4371600 0 0 0 27696 3840 29155 146185 147126;147127 147126 2 QNQTTAISTPASSEISK EASATKCIACQCPSKQNQTTAISTPASSEI QTTAISTPASSEISKAPKSGFEGMFIRKGQ K Q N S K A 2 0 1 0 0 2 1 0 0 2 0 1 0 0 1 4 3 0 0 0 0 0 17 0 1761.8745 P49792 P49792 1753 1769 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 2.2971E-05 60.628 By MS/MS 1 0.93401 1.0024 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93401 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6693000 3104900 3588000 0 0 0 0 0 0 6693000 3104900 3588000 0 0 0 0 0 0 0 0 0 27697 2401 29156 146186 147128;147129 147128 2 QNRPIPQWIR HKTFKIKQFLAKKQKQNRPIPQWIRMKTGN AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH K Q N I R M 0 2 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 10 1 1306.7258 Q59GN2;P62891 Q59GN2 19 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 2;3 8.5995E-15 186.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 0.90912 0.81943 26.941 9 Median 0.82129 0.81943 45.249 3 0 Median 0.91302 0.77846 0.6057 2 0 Median 0.73477 0.79794 9.7433 2 0 Median NaN NaN NaN 0 0 Median 0.92585 1.0099 NaN 1 0 Median 1.1285 0.96821 NaN 1 0 Median 344420000 179450000 164970000 139650000 74500000 65153000 177680000 90408000 87268000 20948000 11368000 9579900 0 0 0 5281900 2824400 2457400 858320 346890 511430 27698 2606 29157 146187;146188;146189;146190;146191;146192;146193;146194;146195 147130;147131;147132;147133;147134;147135;147136;147137;147138;147139;147140;147141;147142;147143 147143 14 QNTFLVLR LGQEVTLCGWIQYRRQNTFLVLRDFDGLVQ GWIQYRRQNTFLVLRDFDGLVQVIIPQDES R Q N L R D 0 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 8 0 989.56581 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 77 84 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.016506 49.358 By matching By MS/MS By matching 1 1 1 1.1683 1.1835 28.813 3 Median 1.1683 1.1835 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89143 0.94379 NaN 1 0 Median 1.927 1.6724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4397600 2123200 2274500 908700 416570 492130 0 0 0 3330100 1647000 1683000 158870 59543 99329 0 0 0 0 0 0 27699 3171 29158 146196;146197;146198 147144 147144 1 QNYHQDSEAAINR ______________________________ VRQNYHQDSEAAINRQINLELYASYVYLSM R Q N N R Q 2 1 2 1 0 2 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 13 0 1544.6968 P02794;E9PRK8;E9PKY7;E9PQR3;E9PKM5;E9PK45 P02794 11 23 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 3 0.0035011 34.685 By matching By MS/MS 1 1 0.88945 0.8042 51.693 2 Median 1.1778 1.1591 NaN 1 0 Median 0.67171 0.55798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1948500 1095800 852730 273010 131070 141930 1675500 964680 710800 0 0 0 0 0 0 0 0 0 0 0 0 27700 1838 29159 146199;146200 147145;147146 147146 2 QPAEHLQLLEEAAK DLASFDEDLADYLYKQPAEHLQLLEEAAKE KQPAEHLQLLEEAAKEVADEVTRPRPSGEE K Q P A K E 3 0 0 0 0 2 3 0 1 0 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1575.8257 P33992;B1AHA9 P33992 91 104 MCM5 DNA replication licensing factor MCM5 yes no 3 0.00031861 50.088 By MS/MS 1 0.65363 0.65822 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65363 0.65822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14457000 7968800 6487700 0 0 0 0 0 0 14457000 7968800 6487700 0 0 0 0 0 0 0 0 0 27701 2224 29160 146201 147147;147148 147148 2 QPAENVNQYLTDPK HTLQWARDEFEGLFKQPAENVNQYLTDPKF KQPAENVNQYLTDPKFVERTLRLAGTQPLE K Q P P K F 1 0 2 1 0 2 1 0 0 0 1 1 0 0 2 0 1 0 1 1 0 0 14 0 1615.7842 P22314;Q5JRR6 P22314 658 671 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.00045619 69.864 By MS/MS By matching By matching 1 1 1 1.0796 1.0892 18.611 3 Median 0.83068 0.79761 NaN 1 0 Median 1.2419 1.0892 NaN 1 0 Median 1.0796 1.1119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42913000 20249000 22664000 37052000 17634000 19418000 3653300 1496600 2156700 2207300 1118200 1089100 0 0 0 0 0 0 0 0 0 27702 2100 29161 146202;146203;146204 147149;147150 147150 2 QPAIISQLDPVNER GLRAAMEALVVEVTKQPAIISQLDPVNERM KQPAIISQLDPVNERMLNMIRQISRPSAAG K Q P E R M 1 1 1 1 0 2 1 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 14 0 1578.8366 Q08211 Q08211 1117 1130 DHX9 ATP-dependent RNA helicase A yes yes 2;3 9.8643E-09 112.94 By matching By MS/MS By MS/MS 2 3 3 0.81087 0.87417 22.53 8 Median NaN NaN NaN 0 0 Median 0.75614 0.65845 40.096 2 0 Median 0.79543 0.87405 7.6494 3 0 Median NaN NaN NaN 0 0 Median 0.86332 0.89279 15.402 3 0 Median NaN NaN NaN 0 0 Median 89361000 48063000 41298000 0 0 0 6166400 3058900 3107500 64789000 35330000 29459000 0 0 0 18406000 9674400 8731200 0 0 0 27703 2736 29162 146205;146206;146207;146208;146209;146210;146211;146212 147151;147152;147153;147154;147155;147156;147157;147158;147159;147160;147161 147152 11 QPAIMPGQSYGLEDGSCSYKDFSESR NNFMFGQKLNVCVSKQPAIMPGQSYGLEDG LEDGSCSYKDFSESRNNRFSTPEQAAKNRI K Q P S R N 1 1 0 2 1 2 2 3 0 1 1 1 1 1 2 5 0 0 2 0 0 0 26 1 2908.2644 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0 P14866 456 481 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 3 2.3354E-08 40.142 By MS/MS 1 0.74195 0.76854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74195 0.76854 NaN 1 0 Median NaN NaN NaN 0 0 Median 4273400 2244200 2029200 0 0 0 0 0 0 0 0 0 0 0 0 4273400 2244200 2029200 0 0 0 27704 2011;436;1419 29163 146213 147162;147163 147162 2 QPALDVLYDVMK NALKRANEFLEVGKKQPALDVLYDVMKSKK GKKQPALDVLYDVMKSKKHRTWQKIHEPIM K Q P M K S 1 0 0 2 0 1 0 0 0 0 2 1 1 0 1 0 0 0 1 2 0 0 12 0 1390.7166 Q14152 Q14152 25 36 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00058433 74.162 By MS/MS By matching 2 1 1.6802 1.4783 29.199 3 Plateau NaN NaN NaN 0 0 Median 1.3006 1.1623 34.976 2 0 Median 0.82357 0.88827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14944000 5356200 9588100 0 0 0 14628000 5189800 9437800 316750 166440 150310 0 0 0 0 0 0 0 0 0 27705 2860 29164 146214;146215;146216 147164;147165;147166 147166 3 QPDSGISSIR GAVLKGPFSRYDYQRQPDSGISSIRSFKTI YDYQRQPDSGISSIRSFKTILPAAAQDVYY R Q P I R S 0 1 0 1 0 1 0 1 0 2 0 0 0 0 1 3 0 0 0 0 0 0 10 0 1058.5356 P04843;B7Z4L4 P04843 269 278 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00075444 71.614 By MS/MS By MS/MS By matching 1 1 1 1.0995 0.95095 18.632 3 Median 0.87909 0.84754 NaN 1 0 Median 1.0995 0.95095 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4159 1.2203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20647000 9382800 11265000 6438200 3381700 3056500 12641000 5327700 7313000 0 0 0 1568600 673500 895060 0 0 0 0 0 0 27706 1853 29165 146217;146218;146219 147167;147168;147169;147170 147170 4 QPEDDLFDR EKRVFKNLQLFMENKQPEDDLFDRLNTGIL LFMENKQPEDDLFDRLNTGILNKHLQDLME K Q P D R L 0 1 0 3 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1133.4989 P11387 P11387 559 567 TOP1 DNA topoisomerase 1 yes yes 2 0.0037182 80.438 By MS/MS 2 0.83364 0.88534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83364 0.88534 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10131000 5161600 4969000 0 0 0 0 0 0 10131000 5161600 4969000 0 0 0 0 0 0 0 0 0 27707 1962 29166 146220;146221 147171;147172 147171 2 QPEDDLFDRLNTGILNK EKRVFKNLQLFMENKQPEDDLFDRLNTGIL EDDLFDRLNTGILNKHLQDLMEGLTAKVFR K Q P N K H 0 1 2 3 0 1 1 1 0 1 3 1 0 1 1 0 1 0 0 0 0 0 17 1 1987.0011 P11387 P11387 559 575 TOP1 DNA topoisomerase 1 yes yes 3 0.029674 15.392 By MS/MS 1 0.56879 0.64369 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56879 0.64369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26732000 16205000 10528000 0 0 0 0 0 0 26732000 16205000 10528000 0 0 0 0 0 0 0 0 0 27708 1962 29167 146222 147173;147174 147173 2 QPEGTPLNHFR LVNGKIQEEILVHIRQPEGTPLNHFRRIIW VHIRQPEGTPLNHFRRIIWCPFIPEESEDC R Q P F R R 0 1 1 0 0 1 1 1 1 0 1 0 0 1 2 0 1 0 0 0 0 0 11 0 1294.6418 Q6P2E9 Q6P2E9 223 233 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.00073744 51.927 By MS/MS 1 0.4709 0.51407 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4709 0.51407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1982500 1129500 853020 0 0 0 0 0 0 1982500 1129500 853020 0 0 0 0 0 0 0 0 0 27709 3155 29168 146223 147175 147175 1 QPETVLTETPQDTIELNR NSCTTQVPNHSLSHRQPETVLTETPQDTIE TVLTETPQDTIELNRLNLESSNSKYSLNTD R Q P N R L 0 1 1 1 0 2 3 0 0 1 2 0 0 0 2 0 4 0 0 1 0 0 18 0 2083.0433 G5EA36;F6QPS0 G5EA36 197 214 CDC27 no no 2;3 6.0105E-06 61.038 By MS/MS 2 0.6572 0.70378 11.028 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6572 0.70378 11.028 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5783400 3636200 2147200 0 0 0 0 0 0 5783400 3636200 2147200 0 0 0 0 0 0 0 0 0 27710 1135 29169 146224;146225 147176;147177 147176 2 QPEWLEEQQGR ASRELVKEPARAGDRQPEWLEEQQGRQFCS AGDRQPEWLEEQQGRQFCSTQAALQAMERE R Q P G R Q 0 1 0 0 0 3 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1398.6528 A0A087WY61;Q14980 Q14980 948 958 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00012417 138.4 By MS/MS By MS/MS By matching 1 1 1 0.91965 0.9235 6.4092 3 Plateau NaN NaN NaN 0 0 Median 1.023 0.86308 NaN 1 0 Median 0.84522 0.9235 NaN 1 0 Median 0.91965 0.81245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13158000 6834800 6323400 0 0 0 2279200 1223100 1056200 10015000 5137100 4877800 863950 474520 389430 0 0 0 0 0 0 27711 2905;77 29170 146226;146227;146228 147178;147179;147180 147178 3 QPEYLDATGGTLHPYQMEGLNWLR PPETPTVDPTVKYERQPEYLDATGGTLHPY GTLHPYQMEGLNWLRFSWAQGTDTILADEM R Q P L R F 1 1 1 1 0 2 2 3 1 0 4 0 1 0 2 0 2 1 2 0 0 0 24 0 2788.3279 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 715 738 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0089459 19.538 By matching By MS/MS 1 2 0.73485 0.80567 2.4393 3 Plateau NaN NaN NaN 0 0 Median 0.86843 0.77259 NaN 1 0 Median 0.7284 0.79763 2.2627 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6598900 3607000 2991900 0 0 0 232700 79655 153040 6366200 3527300 2838800 0 0 0 0 0 0 0 0 0 27712 246 29171 146229;146230;146231 147181;147182 147181 2 QPGITFIAAK GGVKVERQVFGEATKQPGITFIAAKFDGIL GEATKQPGITFIAAKFDGILGMAYPRISVN K Q P A K F 2 0 0 0 0 1 0 1 0 2 0 1 0 1 1 0 1 0 0 0 0 0 10 0 1044.5968 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;F8WD96;C9JH19;F8W787 A0A1B0GW44 178 187 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.0061836 49.423 By MS/MS By MS/MS By MS/MS 2 2 1 1.4759 1.2477 23.281 5 Median 1.2731 1.1836 44.596 2 0 Median 1.5597 1.3134 7.2537 2 0 Median 1.25 1.1886 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48832000 23195000 25637000 37703000 18956000 18747000 7507700 2676300 4831400 3621600 1563000 2058600 0 0 0 0 0 0 0 0 0 27713 324 29172 146232;146233;146234;146235;146236 147183;147184;147185;147186;147187 147184 5 QPGLPQPLMPTQPPAHALQQR AGSQQQLSLGLAGARQPGLPQPLMPTQPPA PLMPTQPPAHALQQRLAPSMAMVSNQGHML R Q P Q R L 2 1 0 0 0 5 0 1 1 0 3 0 1 0 6 0 1 0 0 0 0 0 21 0 2304.2161 O14686 O14686 3322 3342 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.00029163 29.766 By MS/MS 1 0.22979 0.24579 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22979 0.24579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5889100 4597200 1291900 0 0 0 0 0 0 5889100 4597200 1291900 0 0 0 0 0 0 0 0 0 27714 1490 29173 146237 147188;147189 147188 2 QPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK DNYNSPVPPKHAGKKQPHGGQQKPSYGSGY YNQSPYSNYGPPQGKQKGYNHGQGSYSYSN K Q P G K Q 0 0 2 0 0 10 0 7 2 0 0 2 0 0 5 6 0 0 5 0 0 0 39 1 4278.9128 Q12906 Q12906 735 773 ILF3 Interleukin enhancer-binding factor 3 yes yes 5 1.275E-05 30.047 By MS/MS By MS/MS By matching 1 1 1 0.51785 0.46756 57.896 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0922 1.2482 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.40127 0.44902 NaN 1 0 Median 0.51785 0.46756 NaN 1 0 Median 28084000 18856000 9228400 0 0 0 0 0 0 5781200 4049000 1732200 0 0 0 20460000 13686000 6774000 1843200 1120900 722260 27715 2769 29174 146238;146239;146240 147190;147191 147191 2 QPIELLSMK ETDIMRNEFERLAARQPIELLSMKRYELPA ERLAARQPIELLSMKRYELPAPSSGQKNDI R Q P M K R 0 0 0 0 0 1 1 0 0 1 2 1 1 0 1 1 0 0 0 0 0 0 9 0 1057.5842 O75934 O75934 77 85 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.0084827 50.04 By matching By MS/MS By MS/MS 1 1 1 1.0617 0.95508 7.9069 3 Median NaN NaN NaN 0 0 Median 1.1028 0.93895 NaN 1 0 Median 1.0177 0.95508 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0617 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median 15500000 7052800 8446700 0 0 0 1045300 476770 568540 9127500 4319300 4808200 0 0 0 5326700 2256800 3070000 0 0 0 27716 1707 29175 146241;146242;146243 147192;147193;147194 147192 3 QPLALNVAYR LDLLGHYAVMNNPTRQPLALNVAYRRCLQI NNPTRQPLALNVAYRRCLQILAAGLFLPGS R Q P Y R R 2 1 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 10 0 1143.64 B4DY09;Q12905 B4DY09 222 231 ILF2 Interleukin enhancer-binding factor 2 yes no 2 0.00040371 96.253 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.1071 1.0226 35.241 7 Median 1.0911 1.0894 NaN 1 0 Median 0.78276 0.68126 52.185 2 0 Median 1.1655 1.1887 32.351 2 0 Median 1.1803 1.0226 NaN 1 0 Median 1.1071 1.1155 NaN 1 0 Median NaN NaN NaN 0 0 Median 298410000 155880000 142530000 16681000 7981800 8699000 41060000 20119000 20941000 217840000 117200000 100640000 2618000 1120900 1497100 20204000 9450300 10754000 0 0 0 27717 609 29176 146244;146245;146246;146247;146248;146249;146250 147195;147196;147197;147198;147199;147200;147201;147202;147203 147196 9 QPLALNVAYRR LDLLGHYAVMNNPTRQPLALNVAYRRCLQI NPTRQPLALNVAYRRCLQILAAGLFLPGSV R Q P R R C 2 2 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 11 1 1299.7412 B4DY09;Q12905 B4DY09 222 232 ILF2 Interleukin enhancer-binding factor 2 yes no 3 3.2936E-05 87.258 By matching By MS/MS 1 2 0.99085 1.0576 38.18 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2852 2.0116 NaN 1 0 Median 0.96578 1.0391 2.4974 2 0 Median NaN NaN NaN 0 0 Median 20563000 10968000 9595400 0 0 0 0 0 0 0 0 0 609230 197390 411840 19954000 10770000 9183500 0 0 0 27718 609 29177 146251;146252;146253 147204;147205;147206;147207 147207 4 QPLARPNTLTLVHVR THAGVRLYFSTCPFRQPLARPNTLTLVHVR QPLARPNTLTLVHVRLPPGFSASSTVEKPS R Q P V R L 1 2 1 0 0 1 0 0 1 0 3 0 0 0 2 0 2 0 0 2 0 0 15 1 1714.0002 O75694;E9PF10 O75694 377 391 NUP155 Nuclear pore complex protein Nup155 yes no 3;4 0.00011197 56.648 By MS/MS 2 0.76148 0.92613 5.1897 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76148 0.92613 5.1897 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23254000 12128000 11126000 0 0 0 0 0 0 23254000 12128000 11126000 0 0 0 0 0 0 0 0 0 27719 1692 29178 146254;146255 147208;147209 147208 1 QPLLGPPESMR MISKQFHHQLRVGERQPLLGPPESMREHVV VGERQPLLGPPESMREHVVAASKAMKMGDW R Q P M R E 0 1 0 0 0 1 1 1 0 0 2 0 1 0 3 1 0 0 0 0 0 0 11 0 1223.6332 Q99613;B5ME19 Q99613 724 734 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.062173 43.308 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27720 3757 29179 146256 147210 147210 1 QPLQATFR QVVSAVTTLVEAAERQPLQATFRGLRKQVS LVEAAERQPLQATFRGLRKQVSARDLFRAQ R Q P F R G 1 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 8 0 959.51886 P58107;A0A075B730 P58107 1515 1522 EPPK1 Epiplakin yes no 2 0.007602 81.191 By MS/MS 3 0.68981 0.56943 19.7 3 Median NaN NaN NaN 0 0 Median 0.68981 0.56943 19.7 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17212000 9964400 7247500 0 0 0 17212000 9964400 7247500 0 0 0 0 0 0 0 0 0 0 0 0 27721 2520 29180 146257;146258;146259 147211;147212;147213 147211 3 QPNVQDFQFFPPR RVSEPKAPKAPRPPKQPNVQDFQFFPPRLF PKQPNVQDFQFFPPRLFELLEKEILFYRKT K Q P P R L 0 1 1 1 0 3 0 0 0 0 0 0 0 3 3 0 0 0 0 1 0 0 13 0 1618.7892 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 768 780 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.0011223 58.978 By MS/MS 1 0.61118 0.67045 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61118 0.67045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2653600 1539100 1114500 0 0 0 0 0 0 2653600 1539100 1114500 0 0 0 0 0 0 0 0 0 27722 1608;643;167 29181 146260 147214;147215 147214 2 QPPLLGDHPAEYGEGR SGQGDPGSNPNKRQRQPPLLGDHPAEYGEG PPLLGDHPAEYGEGRGFPSVDSRGSCAPAR R Q P G R G 1 1 0 1 0 1 2 3 1 0 2 0 0 0 3 0 0 0 1 0 0 0 16 0 1734.8325 A0A3B3ITJ4 A0A3B3ITJ4 217 232 yes yes 3 0.00053904 51.147 By MS/MS By MS/MS By matching 1 1 1 0.79395 0.75105 22.105 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53755 0.54647 NaN 1 1 Median 0.89854 0.75105 NaN 1 0 Median 0.79395 0.83587 NaN 1 0 Median NaN NaN NaN 0 0 Median 19977000 11549000 8427500 0 0 0 0 0 0 13301000 8032400 5269000 2572400 1102700 1469700 4102900 2414000 1688900 0 0 0 27723 436 29182 146261;146262;146263 147216;147217 147216 2 QPPSQFEPLDMK LRLAQHITYVHQHSRQPPSQFEPLDMKLMR HSRQPPSQFEPLDMKLMRRYIAMCREKQPM R Q P M K L 0 0 0 1 0 2 1 0 0 0 1 1 1 1 3 1 0 0 0 0 0 0 12 0 1415.6755 P33993 P33993 546 557 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.021881 50.353 By MS/MS 1 0.49229 0.44835 NaN 1 Median 0.49229 0.44835 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10066000 6774700 3291500 10066000 6774700 3291500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27724 2225 29183 146264 147218 147218 1 QPPVSPGTALVGSQKEPSEVPTPK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA K Q P P K R 1 0 0 0 0 2 2 2 0 0 1 2 0 0 6 3 2 0 0 3 0 0 24 1 2429.2802 P17096 P17096 32 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 3 0.019333 14.762 By MS/MS 1 0.33738 0.34316 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33738 0.34316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5368100 3912100 1456000 0 0 0 0 0 0 5368100 3912100 1456000 0 0 0 0 0 0 0 0 0 27725 2036 29184 146265 147219 147219 1 QPQGHLLLIGVSGAGK NEVLDHVLRIDRIFRQPQGHLLLIGVSGAG PQGHLLLIGVSGAGKTTLSRFVAWMNGLSV R Q P G K T 1 0 0 0 0 2 0 4 1 1 3 1 0 0 1 1 0 0 0 1 0 0 16 0 1573.894 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2928 2943 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.0025451 52.071 By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 1.0357 0.97784 4.4837 7 Median 1.0088 1.0117 NaN 1 1 Median 1.091 0.94942 4.7055 4 3 Median 0.95531 1.0194 NaN 1 0 Median 1.0357 0.97784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59229000 28630000 30598000 15112000 7043800 8068200 22089000 10029000 12059000 20991000 11024000 9967400 1036900 533380 503500 0 0 0 0 0 0 27726 2865 29185 146266;146267;146268;146269;146270;146271;146272;146273 147220;147221;147222;147223;147224;147225 147221 6 QPQVAELLAEAR ______________________________ ALRQPQVAELLAEARRAFREEFGAEPELAV R Q P A R R 3 1 0 0 0 2 2 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1323.7147 P51570;K7ERJ9 P51570 6 17 GALK1 Galactokinase yes no 2 5.4737E-06 98.943 By MS/MS 1 0.76896 0.76315 NaN 1 Median 0.76896 0.76315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6927500 3671100 3256400 6927500 3671100 3256400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27727 2434 29186 146274 147226;147227 147227 2 QPSLHMSAAAASR VGTFARALDCSSSIRQPSLHMSAAAASRDI IRQPSLHMSAAAASRDITLFHAMDTLQRNG R Q P S R D 4 1 0 0 0 1 0 0 1 0 1 0 1 0 1 3 0 0 0 0 0 0 13 0 1325.651 O94776;E7ESY4;Q13330;H0Y4T7;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2 O94776 215 227 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 3 0.00081592 45.79 By MS/MS By matching By matching By matching 2 1 1 2 1.0474 0.88596 43.733 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.405 1.4483 76 2 1 Median 0.9055 0.77711 NaN 1 0 Median 1.1096 1.1715 NaN 1 0 Median 1.0474 0.87739 7.867 2 0 Median 26646000 13937000 12708000 0 0 0 0 0 0 20950000 11160000 9789700 868380 496620 371760 1022000 457960 564040 3805300 1822300 1982900 27728 1723;888;881 29187 146275;146276;146277;146278;146279;146280 147228;147229;147230 147228 3 QPSQGPTFGIK ALGAHLYQNVFACVRQPSQGPTFGIKGGAA ACVRQPSQGPTFGIKGGAAGGGYSQVIPME R Q P I K G 0 0 0 0 0 2 0 2 0 1 0 1 0 1 2 1 1 0 0 0 0 0 11 0 1158.6033 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 411 421 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.023381 54.416 By MS/MS 3 0.88379 0.76261 16.299 2 Median NaN NaN NaN 0 0 Median 0.88379 0.76261 16.299 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10024000 4983400 5040800 0 0 0 10024000 4983400 5040800 0 0 0 0 0 0 0 0 0 0 0 0 27729 1968 29188 146281;146282;146283 147231;147232;147233 147232 3 QPTEEEASSKEDSAPSKPVVGIIYPPPEVR VQAVPPPPPVPTEPKQPTEEEASSKEDSAP SKPVVGIIYPPPEVRNIVDKTASFVARNGP K Q P V R N 2 1 0 1 0 1 5 1 0 2 0 2 0 0 6 4 1 0 1 3 0 0 30 2 3235.6249 Q15459;F8WB66 Q15459 21 50 SF3A1 Splicing factor 3A subunit 1 yes no 4 3.6318E-14 53.844 By MS/MS 1 0.26546 0.33071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26546 0.33071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7192400 5800500 1392000 0 0 0 0 0 0 7192400 5800500 1392000 0 0 0 0 0 0 0 0 0 27730 2954 29189 146284 147234 147234 1 QPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR K Q P N K K 0 0 1 0 0 2 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 974.51853 M0QZC5;P62280;M0R1H6 M0QZC5 13 20 RPS11 40S ribosomal protein S11 yes no 2 0.0027937 104.76 By MS/MS By MS/MS By matching 1 1 1 0.92471 0.86224 4.4217 3 Median 0.92471 0.86224 NaN 1 0 Median 1.0675 0.91439 NaN 1 0 Median 0.88387 0.83852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22892000 13122000 9770300 9921400 6727800 3193600 8941100 4336100 4605000 4029700 2058000 1971700 0 0 0 0 0 0 0 0 0 27731 1422 29190 146285;146286;146287 147235;147236 147235 2 QPTLQAAELIDSEFR EDLDYTPTSASFVNKQPTLQAAELIDSEFR QPTLQAAELIDSEFRAGMSNRQKNKAKRMA K Q P F R A 2 1 0 1 0 2 2 0 0 1 2 0 0 1 1 1 1 0 0 0 0 0 15 0 1716.8683 A0A0A0MTH9;O14981 A0A0A0MTH9 187 201 BTAF1 TATA-binding protein-associated factor 172 yes no 2 0.0027736 37.681 By MS/MS 1 1.0449 1.1604 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0449 1.1604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1539200 601470 937710 0 0 0 0 0 0 1539200 601470 937710 0 0 0 0 0 0 0 0 0 27732 191 29191 146288 147237;147238 147237 2 QPVLSQTEAR GAYLAQPLLREVLEKQPVLSQTEARDLVER EVLEKQPVLSQTEARDLVERCMRVLYYRDA K Q P A R D 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1127.5935 P28070 P28070 202 211 PSMB4 Proteasome subunit beta type-4 yes yes 2 0.00040727 76.827 By MS/MS By MS/MS 1 1 1.0078 0.95272 NaN 1 Median 1.0078 0.95272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6541300 3062400 3478900 6541300 3062400 3478900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27733 2160 29192 146289;146290 147239;147240;147241 147239 3 QPVPFGLVR HLLKHPQAHVDIYEKQPVPFGLVRFGVAPD VDIYEKQPVPFGLVRFGVAPDHPEVKNVIN K Q P V R F 0 1 0 0 0 1 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 1011.5866 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3;J3QKZ8;J3QQW7 P22570 71 79 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2 0.035824 34.808 By matching By matching By MS/MS By matching 1 2 1 1 1.1887 0.96146 32.602 5 Median 1.4414 1.4387 NaN 1 0 Median 1.0578 0.89801 9.6555 2 0 Median 0.63189 0.63728 NaN 1 0 Median 1.4523 1.2726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3915400 2238800 1676600 677420 298820 378610 373480 131210 242260 2595100 1702000 893090 269450 106760 162680 0 0 0 0 0 0 27734 2102 29193 146291;146292;146293;146294;146295 147242;147243 147242 2 QPVYVVDVSK FGPIPLGSLGWKTVKQPVYVVDVSKGIVNA WKTVKQPVYVVDVSKGIVNAVKDPDANGKS K Q P S K G 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 4 0 0 10 0 1132.6128 A0A3B3ISG8;Q16795 A0A3B3ISG8 238 247 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.050101 28.013 By MS/MS 1 0.94534 0.90076 NaN 1 Median 0.94534 0.90076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5257600 2858300 2399400 5257600 2858300 2399400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27735 424 29194 146296 147244 147244 1 QPYAVSELAGHQTSAESWGTGR DIVNFVHTNLRKNNRQPYAVSELAGHQTSA LAGHQTSAESWGTGRAVARIPRVRGGGTHR R Q P G R A 3 1 0 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 22 0 2331.088 P36578;H3BTP7;H3BU31 P36578 50 71 RPL4 60S ribosomal protein L4 yes no 2;3 1.8418E-13 84.762 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 2 1 1.0415 0.91955 23.475 8 Median 0.84484 0.79826 18.588 2 0 Median 1.1043 0.92881 NaN 1 0 Median 1.1387 1.1077 NaN 1 0 Median 1.6227 1.3995 NaN 1 0 Median 1.0051 0.99136 26.068 2 0 Median 0.89612 0.76827 NaN 1 0 Median 177690000 86739000 90949000 84285000 41831000 42454000 12589000 5740200 6849100 39792000 18635000 21157000 8170500 3067800 5102700 31553000 16739000 14815000 1297400 726590 570850 27736 2260 29195 146297;146298;146299;146300;146301;146302;146303;146304 147245;147246;147247;147248;147249;147250;147251;147252;147253;147254 147249 10 QQAADLISR GTVLWRLNNKSAKVRQQAADLISRTAVVMK KSAKVRQQAADLISRTAVVMKTCQEEKLMG R Q Q S R T 2 1 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1000.5302 O75533 O75533 949 957 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.016564 57.59 By MS/MS 1 0.66543 0.69161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66543 0.69161 NaN 1 1 Median NaN NaN NaN 0 0 Median 6426200 3357100 3069000 0 0 0 0 0 0 0 0 0 0 0 0 6426200 3357100 3069000 0 0 0 27737 1683 29196 146305 147255 147255 1 QQAAQAFIHNSLYGPGTNR YLAVRLKDQDLRDSRQQAAQAFIHNSLYGP QAFIHNSLYGPGTNRTTVNKFLSLANKRLP R Q Q N R T 3 1 2 0 0 3 0 2 1 1 1 0 0 1 1 1 1 0 1 0 0 0 19 0 2072.0188 Q9UMY1 Q9UMY1 187 205 NOL7 Nucleolar protein 7 yes yes 3 0.00015712 47.726 By MS/MS 3 0.9403 0.95159 83.965 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9403 0.95159 83.965 3 1 Median NaN NaN NaN 0 0 Median 23120000 13251000 9869000 0 0 0 0 0 0 0 0 0 0 0 0 23120000 13251000 9869000 0 0 0 27738 4338 29197 146306;146307;146308 147256;147257 147256 1 QQAAYYAQTSPQGMPQHPPAPQGQ GGQPDYSAAWAEYYRQQAAYYAQTSPQGMP SPQGMPQHPPAPQGQ_______________ R Q Q G Q - 4 0 0 0 0 7 0 2 1 0 0 0 1 0 5 1 1 0 2 0 0 0 24 0 2580.1816 Q96AE4 Q96AE4 621 644 FUBP1 Far upstream element-binding protein 1 yes yes 2;3 9.2704E-49 146.47 By MS/MS By MS/MS By MS/MS 1 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104850000 0 0 4483200 0 0 0 0 0 98277000 0 0 2091300 0 0 0 0 0 0 0 0 27739 3599 29198;29199 146309;146310;146311;146312;146313 147258;147259;147260;147261;147262;147263 147261 1790 6 QQAAYYGQTPGPGGPQPPPTQQGQQQAQ GSQPDYSAAWAEYYRQQAAYYGQTPGPGGP GPQPPPTQQGQQQAQ_______________ R Q Q A Q - 3 0 0 0 0 10 0 5 0 0 0 0 0 0 6 0 2 0 2 0 0 0 28 0 2907.3536 Q92945;M0R3J3 Q92945 684 711 KHSRP Far upstream element-binding protein 2 yes no 3 0.0090666 22.979 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5701300 0 0 0 0 0 0 0 0 5701300 0 0 0 0 0 0 0 0 0 0 0 27740 3568 29200 146314 147264 147264 1 QQDVFMFLTNR HSKLDPDMAFCANIRQQDVFMFLTNRHTLG ANIRQQDVFMFLTNRHTLGHLLSLDSYRTT R Q Q N R H 0 1 1 1 0 2 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 11 0 1397.6762 Q02809 Q02809 489 499 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.018812 35.511 By MS/MS By matching 1 1 1.087 1.1072 0.51197 2 Median 1.1248 1.1032 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0505 1.1112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4263300 2146800 2116500 2561800 1248700 1313100 0 0 0 1701500 898130 803380 0 0 0 0 0 0 0 0 0 27741 2702 29201 146315;146316 147265;147266 147265 2 QQDVLGFLEANK VYIASSSGSTAIKKKQQDVLGFLEANKIGF KKKQQDVLGFLEANKIGFEEKDIAANEENR K Q Q N K I 1 0 1 1 0 2 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 0 1360.6987 O75368 O75368 20 31 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 2 0.013861 35.541 By MS/MS By matching 1 1 1.181 1.0414 5.5307 2 Median 1.0901 1.0015 NaN 1 0 Median 1.2794 1.0829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4512500 2158300 2354200 3727500 1841500 1886000 784970 316770 468200 0 0 0 0 0 0 0 0 0 0 0 0 27742 1663 29202 146317;146318 147267 147267 1 QQDVNWLGQGLIQSAAK FKVFQKEEIEPLQGKQQDVNWLGQGLIQSA DVNWLGQGLIQSAAKSTSTQGLEHDLDDVN K Q Q A K S 2 0 1 1 0 4 0 2 0 1 2 1 0 0 0 1 0 1 0 1 0 0 17 0 1854.9588 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3253 3269 DST Dystonin yes no 2 0.047289 21.557 By MS/MS By matching 1 1 1.0462 1.0931 18.098 2 Median 0.97271 0.96177 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1252 1.2423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3116400 1463500 1652900 2264200 1100400 1163800 0 0 0 852210 363120 489090 0 0 0 0 0 0 0 0 0 27743 934 29203 146319;146320 147268 147268 1 QQEELLAEENQR RRKQEELQQLEQQRRQQEELLAEENQRLRE QRRQQEELLAEENQRLREQLQLLEEQHRAA R Q Q Q R L 1 1 1 0 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1485.7059 Q15149;H0YDN1 Q15149 2719 2730 PLEC Plectin yes no 2 0.0038305 67.726 By MS/MS 1 0.97575 0.98101 NaN 1 Median 0.97575 0.98101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4192200 1915300 2276900 4192200 1915300 2276900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27744 2933 29204 146321 147269 147269 1 QQEGFKGTFPDAR REEEMRRQQEEMMRRQQEGFKGTFPDAREQ RRQQEGFKGTFPDAREQEIRMGQMAMGGAM R Q Q A R E 1 1 0 1 0 2 1 2 0 0 0 1 0 2 1 0 1 0 0 0 0 0 13 1 1479.7106 Q15233 Q15233 366 378 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 0.002014 67.776 By MS/MS By matching 2 1 0.89595 0.92062 17.992 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83549 0.85718 10.097 2 0 Median 1.2621 1.141 NaN 1 0 Median 20975000 9770800 11204000 0 0 0 0 0 0 0 0 0 0 0 0 17043000 7963100 9080400 3931100 1807800 2123300 27745 2935 29205 146322;146323;146324 147270;147271;147272;147273 147270 4 QQEGFKPNYMENR EEEMIRHREQEELRRQQEGFKPNYMENREQ RRQQEGFKPNYMENREQEMRMGDMGPRGAI R Q Q N R E 0 1 2 0 0 2 2 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 13 1 1639.7413 Q8WXF1 Q8WXF1 375 387 PSPC1 Paraspeckle component 1 yes yes 3 0.00033021 60.448 By MS/MS 3 1.1827 1.3268 36.771 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1827 1.3268 36.771 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33646000 17101000 16546000 0 0 0 0 0 0 33646000 17101000 16546000 0 0 0 0 0 0 0 0 0 27746 3520 29206 146325;146326;146327 147274;147275;147276 147276 3 QQEQADSLER ALRAEVSKLEQQCQKQQEQADSLERSLEAE QQCQKQQEQADSLERSLEAERASRAERDSA K Q Q E R S 1 1 0 1 0 3 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1202.5527 A0A087WY61;Q14980 Q14980 1139 1148 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0013354 66.435 By matching By MS/MS By MS/MS 1 2 1 0.85155 0.88376 9.5164 4 Median NaN NaN NaN 0 0 Median 1.0274 0.91102 NaN 1 0 Median 0.80071 0.87285 15.864 2 0 Median NaN NaN NaN 0 0 Median 0.82433 0.85731 NaN 1 0 Median NaN NaN NaN 0 0 Median 3539600 1843300 1696400 0 0 0 347480 182080 165400 2156300 1111900 1044400 0 0 0 1035900 549320 486560 0 0 0 27747 2905;77 29207 146328;146329;146330;146331 147277;147278;147279;147280 147278 4 QQEQQVPILEK GVHISGLHTESAPRRQQEQQVPILEKFCFT APRRQQEQQVPILEKFCFTPHTEEGCLSER R Q Q E K F 0 0 0 0 0 4 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 11 0 1338.7143 P49327;A0A0U1RQF0 P49327 1106 1116 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0021689 54.982 By matching By MS/MS 1 1 0.97291 0.8987 11.532 2 Median 0.86172 0.82832 NaN 1 0 Median 1.0984 0.97505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8338500 3584600 4753900 4581600 2058700 2522900 3757000 1525900 2231000 0 0 0 0 0 0 0 0 0 0 0 0 27748 2377 29208 146332;146333 147281 147281 1 QQEVETELK EERMERKRREKIERRQQEVETELKMWDPHN EKIERRQQEVETELKMWDPHNDPNAQGDAF R Q Q L K M 0 0 0 0 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1102.5506 P08621;M0QYR1;M0QX04 P08621 79 87 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.019204 40.067 By MS/MS By matching By matching 1 1 1 1.2531 1.3078 15.891 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.122 1.1547 NaN 1 0 Median 1.2531 1.1021 NaN 1 0 Median 1.5521 1.4811 NaN 1 0 Median NaN NaN NaN 0 0 Median 5914000 2764000 3150000 0 0 0 0 0 0 2514600 1095500 1419100 188720 94401 94321 3210700 1574000 1636600 0 0 0 27749 1905 29209 146334;146335;146336 147282 147282 1 QQEVVVAGSSLPTSSK LYQVQLAQQQAALQKQQEVVVAGSSLPTSS QEVVVAGSSLPTSSKVNATVPSNMMSVNGQ K Q Q S K V 1 0 0 0 0 2 1 1 0 0 1 1 0 0 1 4 1 0 0 3 0 0 16 0 1615.8417 Q9H3P7 Q9H3P7 307 322 ACBD3 Golgi resident protein GCP60 yes yes 2 2.1637E-08 101.72 By MS/MS 1 1.2382 1.1765 NaN 1 Median 1.2382 1.1765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7322500 2711700 4610800 7322500 2711700 4610800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27750 3957 29210 146337 147283 147283 1 QQFTEEEIYKDR ISNEKPEVKIGVSVKQQFTEEEIYKDRDSQ SVKQQFTEEEIYKDRDSQITAIEKTFEDAQ K Q Q D R D 0 1 0 1 0 2 3 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 12 1 1584.742 Q8N7H5;B4DGJ5 Q8N7H5 161 172 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 0.00020015 65.563 By MS/MS 1 1.443 1.532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.443 1.532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7468200 2933900 4534300 0 0 0 0 0 0 7468200 2933900 4534300 0 0 0 0 0 0 0 0 0 27751 3393 29211 146338 147284 147284 1 QQGDHSLKEHELLEQQK QQQAALLMQQEERAKQQGDHSLKEHELLEQ GDHSLKEHELLEQQKRAAVLLEQERQQEIA K Q Q Q K R 0 0 0 1 0 4 3 1 2 0 3 2 0 0 0 1 0 0 0 0 0 0 17 1 2046.013 Q13435;H0YCG1 Q13435 166 182 SF3B2 Splicing factor 3B subunit 2 yes no 3 0.017262 20.65 By MS/MS 1 1.1081 1.0342 NaN 1 Median NaN NaN NaN 0 0 Median 1.1081 1.0342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135300 1532900 1602400 0 0 0 3135300 1532900 1602400 0 0 0 0 0 0 0 0 0 0 0 0 27752 2817 29212 146339 147285;147286 147285 2 QQGDHSLKEHELLEQQKR QQQAALLMQQEERAKQQGDHSLKEHELLEQ DHSLKEHELLEQQKRAAVLLEQERQQEIAK K Q Q K R A 0 1 0 1 0 4 3 1 2 0 3 2 0 0 0 1 0 0 0 0 0 0 18 2 2202.1141 Q13435;H0YCG1 Q13435 166 183 SF3B2 Splicing factor 3B subunit 2 yes no 3;4;5 0.0042686 25.824 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 0.84588 0.96386 18.647 7 Median NaN NaN NaN 0 0 Median 1.4053 1.3922 11.753 2 0 Median 0.84204 0.95949 2.0916 3 0 Median 0.94031 1.0717 NaN 1 0 Median 0.80839 0.95263 NaN 1 0 Median NaN NaN NaN 0 0 Median 13052000 6624700 6427600 0 0 0 3778400 1489900 2288500 5995100 3152600 2842500 312480 176630 135850 2966300 1805600 1160800 0 0 0 27753 2817 29213 146340;146341;146342;146343;146344;146345;146346 147287;147288;147289;147290;147291 147291 5 QQGLASYDYVR IIIIIEIIEKTEIIRQQGLASYDYVRRRLT EIIRQQGLASYDYVRRRLTAEDLFEARIIS R Q Q V R R 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 11 0 1298.6255 Q15149;H0YDN1 Q15149 3771 3781 PLEC Plectin yes no 2 0.00016284 90.906 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3216 1.2484 52.646 4 Median 1.1343 1.1102 NaN 1 1 Median 1.3797 1.1605 NaN 1 0 Median 1.2659 1.3429 NaN 1 0 Median 3.1786 3.3974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21728000 10236000 11492000 12227000 6053000 6173800 1046600 541310 505270 7478300 3497100 3981300 976320 144710 831610 0 0 0 0 0 0 27754 2933 29214 146347;146348;146349;146350 147292;147293 147293 2 QQGNEPSQILSLTGDR LTVNSIGQLKIWDFRQQGNEPSQILSLTGD QGNEPSQILSLTGDRVPLHCVDRHPNQQHV R Q Q D R V 0 1 1 1 0 3 1 2 0 1 2 0 0 0 1 2 1 0 0 0 0 0 16 0 1741.8595 Q8NFH3 Q8NFH3 202 217 NUP43 Nucleoporin Nup43 yes yes 2 5.2981E-10 118.48 By MS/MS 1 0.78224 0.85489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78224 0.85489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19007000 11242000 7764900 0 0 0 0 0 0 19007000 11242000 7764900 0 0 0 0 0 0 0 0 0 27755 3435 29215 146351 147294;147295;147296;147297 147295 4 QQHVIETLIGK ALGIDCLHKGTNDMKQQHVIETLIGKKQQI NDMKQQHVIETLIGKKQQISLATQMVRMIL K Q Q G K K 0 0 0 0 0 2 1 1 1 2 1 1 0 0 0 0 1 0 0 1 0 0 11 0 1264.7139 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 503 513 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 0.00018344 64.82 By MS/MS By MS/MS By matching 1 3 2 1.3136 1.1866 27.287 6 Median 1.4087 1.3171 NaN 1 0 Median 1.1283 0.94214 9.2875 3 0 Median 1.5065 1.6497 4.6101 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60710000 27295000 33415000 18520000 7833700 10686000 35652000 16524000 19128000 6538700 2937800 3600900 0 0 0 0 0 0 0 0 0 27756 2364 29216 146352;146353;146354;146355;146356;146357 147298;147299;147300;147301 147299 4 QQHVIETLIGKK ALGIDCLHKGTNDMKQQHVIETLIGKKQQI DMKQQHVIETLIGKKQQISLATQMVRMILK K Q Q K K Q 0 0 0 0 0 2 1 1 1 2 1 2 0 0 0 0 1 0 0 1 0 0 12 1 1392.8089 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 503 514 CCT5 T-complex protein 1 subunit epsilon yes no 2;3 1.7862E-06 121.02 By MS/MS By matching 2 1 1.261 1.1889 41.166 3 Median 1.253 1.176 1.5412 2 0 Median NaN NaN NaN 0 0 Median 2.2735 2.3986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28029000 12121000 15908000 27231000 11984000 15247000 0 0 0 797400 136660 660750 0 0 0 0 0 0 0 0 0 27757 2364 29217 146358;146359;146360 147302;147303;147304 147302 3 QQIEELKNENALLR FKEAERLQMDNELLRQQIEELKNENALLRA RQQIEELKNENALLRAQLQQHNLEMVGEGT R Q Q L R A 1 1 2 0 0 2 3 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1696.9108 M0QXT0;Q15853;M0QYU7 M0QXT0 223 236 USF2 Upstream stimulatory factor 2 yes no 3 0.0043085 31.827 By MS/MS By matching 1 1 1.0469 1.0492 2.103 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90824 1.0337 NaN 1 0 Median 1.2068 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10506000 5703200 4802700 0 0 0 0 0 0 10031000 5496200 4534900 474740 206980 267760 0 0 0 0 0 0 27758 1411 29218 146361;146362 147305 147305 1 QQIESYPTDSILEDQSDQR LNPLTFVPAIASAIRQQIESYPTDSILEDQ SYPTDSILEDQSDQRVIIKLNIHVGNISLV R Q Q Q R V 0 1 0 3 0 4 2 0 0 2 1 0 0 0 1 3 1 0 1 0 0 0 19 0 2251.024 G5E975;Q12824;A0A0G2JRV3 Q12824 243 261 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2;3 6.7823E-14 109.22 By MS/MS By matching 4 2 0.79727 0.7838 6.8008 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76036 0.77091 7.5701 4 0 Median 0.93308 0.80446 7.0084 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37406000 20696000 16709000 0 0 0 0 0 0 37022000 20499000 16523000 383110 197400 185710 0 0 0 0 0 0 27759 1128;2761 29219 146363;146364;146365;146366;146367;146368 147306;147307;147308;147309;147310;147311;147312;147313 147309 8 QQILLSFK QAIIDCLGSRSNKQRQQILLSFKTAYGKDL SRSNKQRQQILLSFKTAYGKDLIKDLKSEL R Q Q F K T 0 0 0 0 0 2 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 975.57532 P50995 P50995 236 243 ANXA11 Annexin A11 yes yes 2 0.026169 42.109 By MS/MS By matching 1 1 1.2458 1.1296 3.6323 2 Median 1.1583 1.101 NaN 1 0 Median 1.34 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5356200 2354700 3001500 3829600 1655500 2174200 1526600 699210 827370 0 0 0 0 0 0 0 0 0 0 0 0 27760 2425 29220 146369;146370 147314;147315 147314 2 QQINEMHLLIQQAR QGIIACCNPVPPLVRQQINEMHLLIQQARE RQQINEMHLLIQQAREMPLLKSEVAAGVKK R Q Q A R E 1 1 1 0 0 4 1 0 1 2 2 0 1 0 0 0 0 0 0 0 0 0 14 0 1720.9043 Q01780 Q01780 564 577 EXOSC10 Exosome component 10 yes yes 3 0.063554 25.322 By MS/MS 1 0.77579 0.82396 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77579 0.82396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9942800 5638400 4304400 0 0 0 0 0 0 9942800 5638400 4304400 0 0 0 0 0 0 0 0 0 27761 2691 29221 146371 147316 147316 0 QQIQSIQQSIER VIACSVTIKEGSQLKQQIQSIQQSIERLLV QLKQQIQSIQQSIERLLV____________ K Q Q E R L 0 1 0 0 0 5 1 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 12 0 1456.7634 P55769 P55769 114 125 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed no no 2 8.4125E-10 177.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 1 1.0851 1.0527 11.763 9 Median 1.0851 1.0527 NaN 1 0 Median 1.4795 1.2653 NaN 1 0 Median 1.0394 1.0462 NaN 1 0 Median 1.3062 0.98251 13.176 2 0 Median 1.0181 1.0722 13.424 3 1 Plateau 1.4452 1.0787 NaN 1 0 Median 339350000 159000000 180350000 20721000 9975200 10746000 72752000 29889000 42864000 150910000 73833000 77077000 17458000 7176600 10281000 67708000 33969000 33740000 9801500 4156400 5645100 27762 2501 29222 146372;146373;146374;146375;146376;146377;146378;146379;146380 147317;147318;147319;147320;147321;147322;147323;147324;147325;147326;147327;147328;147329;147330;147331;147332 147327 16 QQISLATQMVR DMKQQHVIETLIGKKQQISLATQMVRMILK IGKKQQISLATQMVRMILKIDDIRKPGESE K Q Q V R M 1 1 0 0 0 3 0 0 0 1 1 0 1 0 0 1 1 0 0 1 0 0 11 0 1273.6813 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 515 525 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.00076197 63.076 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.2364 1.084 15.348 7 Median 1.1653 1.0943 3.4889 2 0 Median 1.2364 1.0689 16.773 3 0 Median 1.4398 1.4564 NaN 1 0 Median 1.2815 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80842000 35745000 45096000 53012000 23810000 29202000 18905000 8257200 10648000 8481500 3492100 4989400 443390 185690 257700 0 0 0 0 0 0 27763 2364 29223 146381;146382;146383;146384;146385;146386;146387 147333;147334;147335;147336;147337;147338;147339 147333 7 QQLAPYSDDLR QELRDRARAHVETLRQQLAPYSDDLRQRLT ETLRQQLAPYSDDLRQRLTARLEALKEGGG R Q Q L R Q 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1304.6361 CON__P15497 CON__P15497 184 194 yes yes 2 0.00038961 109.29 By MS/MS By MS/MS By MS/MS 1 1 1 0.080382 0.076386 53.25 3 Plateau 0.080382 0.076386 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.027443 0.026342 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.043628 0.043802 NaN 1 1 Median NaN NaN NaN 0 0 Median 43805000 40724000 3080600 28142000 25838000 2304300 0 0 0 6555900 6355000 200830 0 0 0 9106900 8531500 575460 0 0 0 + 27764 758 29224 146388;146389;146390 147340;147341;147342 147340 3 QQLAPYSDDLRQR QELRDRARAHVETLRQQLAPYSDDLRQRLT LRQQLAPYSDDLRQRLTARLEALKEGGGSL R Q Q Q R L 1 2 0 2 0 3 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 13 1 1588.7958 CON__P15497 CON__P15497 184 196 yes yes 3 0.014927 38.178 By MS/MS 1 0.23236 0.252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23236 0.252 NaN 1 1 Median NaN NaN NaN 0 0 Median 6900400 5830000 1070400 0 0 0 0 0 0 0 0 0 0 0 0 6900400 5830000 1070400 0 0 0 + 27765 758 29225 146391 147343 147343 1 QQLAQYQQQQSQASAPSTSR QSTILVLQQQLKETRQQLAQYQQQQSQASA YQQQQSQASAPSTSRTTASEPVEQSEATSK R Q Q S R T 3 1 0 0 0 8 0 0 0 0 1 0 0 0 1 4 1 0 1 0 0 0 20 0 2234.0676 Q15007 Q15007 234 253 WTAP Pre-mRNA-splicing regulator WTAP yes yes 3 3.4842E-06 48.112 By MS/MS 1 1.0593 1.0673 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0593 1.0673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2112000 1059300 1052800 0 0 0 0 0 0 2112000 1059300 1052800 0 0 0 0 0 0 0 0 0 27766 2910 29226 146392 147344;147345 147345 2 QQLEAVNEAIK TLELEELKREHTSYKQQLEAVNEAIKSYES TSYKQQLEAVNEAIKSYESQIEVMAAEVAK K Q Q I K S 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1241.6616 O95347 O95347 838 848 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0025757 60.518 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0628 1.0343 11.624 5 Median 1.0628 1.0555 NaN 1 0 Median 0.94554 0.80678 NaN 1 0 Median 0.99378 1.0621 NaN 1 1 Median 1.2098 1.0343 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1295 0.94366 NaN 1 0 Median 20832000 9741700 11090000 2315800 1009400 1306500 5254500 2498200 2756300 10101000 4839500 5261600 2658900 1182900 1476000 0 0 0 501420 211760 289660 27767 1766 29227 146393;146394;146395;146396;146397 147346;147347;147348 147348 3 QQLEELAR ______________________________ GSLLQDKQQLEELARQAVDRALAEGVLLRT K Q Q A R Q 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 985.51926 A0A2R8Y430;P48637;A0A2R8YF34;A0A2R8Y2X9;A0A2R8Y6Y6;A0A2R8Y4V9;A0A2R8Y790;A0A2R8Y446;A0A0S2Z4J7;A0A2R8Y2F2 A0A2R8Y430 13 20 GSS Glutathione synthetase yes no 2 0.01337 53.166 By MS/MS 1 1.2164 1.0347 NaN 1 Median NaN NaN NaN 0 0 Median 1.2164 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4071200 1731000 2340200 0 0 0 4071200 1731000 2340200 0 0 0 0 0 0 0 0 0 0 0 0 27768 358 29228 146398 147349 147349 1 QQLEEQTVELSTEVQSLYR LKSEKLQISTNLQRRQQLEEQTVELSTEVQ EQTVELSTEVQSLYREIKDAKEQVSPLETT R Q Q Y R E 0 1 0 0 0 4 4 0 0 0 3 0 0 0 0 2 2 0 1 2 0 0 19 0 2279.1281 Q92878;A0A1W2PQ90 Q92878 885 903 RAD50 DNA repair protein RAD50 yes no 2 0.045409 20.381 By MS/MS 1 0.96788 1.0409 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96788 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 858210 414510 443710 0 0 0 0 0 0 858210 414510 443710 0 0 0 0 0 0 0 0 0 27769 3561 29229 146399 147350 147350 1 QQLEETSEIR LSVQSAISTQPEAVKQQLEETSEIRSDLEQ PEAVKQQLEETSEIRSDLEQLDHEVKEAQT K Q Q I R S 0 1 0 0 0 2 3 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1231.6044 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4721 4730 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.011023 57.859 By MS/MS 1 1.2458 1.052 NaN 1 Median NaN NaN NaN 0 0 Median 1.2458 1.052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4530800 1647000 2883800 0 0 0 4530800 1647000 2883800 0 0 0 0 0 0 0 0 0 0 0 0 27770 1220 29230 146400 147351 147351 1 QQLNIHGLLPPSFNSQEIQVLR NPHLNKDLAFTLEERQQLNIHGLLPPSFNS LLPPSFNSQEIQVLRVVKNFEHLNSDFDRY R Q Q L R V 0 1 2 0 0 4 1 1 1 2 4 0 0 1 2 2 0 0 0 1 0 0 22 0 2530.3656 P48163 P48163 36 57 ME1 NADP-dependent malic enzyme yes yes 3 1.1264E-23 116.65 By MS/MS By MS/MS 1 1 0.82458 0.75191 16.084 2 Median 0.87883 0.84248 NaN 1 0 Median 0.77368 0.67108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11685000 6398900 5286500 7837100 4019000 3818100 3848300 2379900 1468400 0 0 0 0 0 0 0 0 0 0 0 0 27771 2359 29231 146401;146402 147352;147353;147354;147355 147352 4 QQLPDMEFGR FDESLSMFTELQQMRQQLPDMEFGRRMAVE LQQMRQQLPDMEFGRRMAVERELEKVDAVR R Q Q G R R 0 1 0 1 0 2 1 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 10 0 1219.5656 Q96BP3;F5H7P7;H0Y8N5 Q96BP3 333 342 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0081402 46.891 By MS/MS 1 0.80148 0.84226 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80148 0.84226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4550600 2525100 2025500 0 0 0 0 0 0 4550600 2525100 2025500 0 0 0 0 0 0 0 0 0 27772 3609 29232 146403 147356 147356 1 QQLQQVPGLLHR FLIDHAWTCRVEHARQQLQQVPGLLHRMAN HARQQLQQVPGLLHRMANLMGIEFHGELPS R Q Q H R M 0 1 0 0 0 4 0 1 1 0 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1415.7997 Q14166 Q14166 133 144 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 3 4.2186E-05 87.568 By MS/MS 1 1.0975 1.0386 NaN 1 Median 1.0975 1.0386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8864900 4002600 4862300 8864900 4002600 4862300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27773 2861 29233 146404 147357;147358 147357 2 QQLSAEELDAQLDAYNAR GGARGRGRGAGRNSKQQLSAEELDAQLDAY SAEELDAQLDAYNARMDTS___________ K Q Q A R M 4 1 1 2 0 3 2 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 18 0 2033.9654 Q86V81;E9PB61 Q86V81 236 253 ALYREF THO complex subunit 4 yes no 2;3 5.3569E-14 130.07 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 4 1 1.0509 1.0212 6.8106 11 Median 1.0364 0.96714 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0297 0.98423 5.22 2 0 Median 1.3546 1.1314 6.5315 3 0 Plateau 1.0004 1.0412 8.5173 4 0 Median 1.2628 1.0369 NaN 1 0 Median 89955000 41663000 48292000 7232300 3308800 3923500 0 0 0 27197000 12525000 14672000 2061800 866280 1195500 53156000 24814000 28342000 307160 148440 158720 27774 3286 29234 146405;146406;146407;146408;146409;146410;146411;146412;146413;146414;146415 147359;147360;147361;147362;147363;147364;147365;147366;147367;147368;147369;147370 147360 12 QQLVASHLEK KLTPVLLAKQLAALKQQLVASHLEKLLGPD LAALKQQLVASHLEKLLGPDAAINLTDPDG K Q Q E K L 1 0 0 0 0 2 1 0 1 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1151.6299 Q13561;H0YI98;F8W1I6;F8VW18;F8VX93 Q13561 147 156 DCTN2 Dynactin subunit 2 yes no 2 0.041571 30.612 By MS/MS 1 1.0362 0.90411 NaN 1 Median NaN NaN NaN 0 0 Median 1.0362 0.90411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186300 521950 664340 0 0 0 1186300 521950 664340 0 0 0 0 0 0 0 0 0 0 0 0 27775 2824 29235 146416 147371 147371 1 QQMLENQMEVR DYGKDLTSVNILLKKQQMLENQMEVRKKEI LLKKQQMLENQMEVRKKEIEELQSQAQALS K Q Q V R K 0 1 1 0 0 3 2 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 11 0 1404.649 Q01082 Q01082 1422 1432 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 8.9653E-07 166.33 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2148 1.0044 15.149 5 Median 1.2961 1.2762 NaN 1 0 Median 1.2224 1.0159 1.6189 2 0 Median 0.83788 0.91322 NaN 1 0 Median 0.97759 0.85781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31140000 15757000 15383000 3017100 1522300 1494900 8959400 3872700 5086700 17367000 9447500 7919700 1796500 914430 882050 0 0 0 0 0 0 27776 2681 29236 146417;146418;146419;146420;146421 147372;147373;147374;147375;147376;147377;147378 147372 7 QQMQDFFLAHKDEEWFR EAVKRYNDYKLDFRRQQMQDFFLAHKDEEW MQDFFLAHKDEEWFRSKYHPDEVGKRRQEA R Q Q F R S 1 1 0 2 0 3 2 0 1 0 1 1 1 3 0 0 0 1 0 0 0 0 17 1 2254.0266 Q9BXP5 Q9BXP5 182 198 SRRT Serrate RNA effector molecule homolog yes yes 4 0.062202 9.4055 By matching By MS/MS 1 2 1.2012 1.3164 11.79 3 Median 1.2752 1.3164 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.077 1.2286 15.691 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3075200 1409300 1665900 323190 154210 168980 0 0 0 2752000 1255100 1497000 0 0 0 0 0 0 0 0 0 27777 3879 29237 146422;146423;146424 147379 147379 1 QQNELAELHANLAR KVAGIESHSELQISRQQNELAELHANLARA RQQNELAELHANLARALQQVQEKEVRAQKL R Q Q A R A 3 1 2 0 0 2 2 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 14 0 1605.8223 A0A087WY61;Q14980 Q14980 870 883 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.3918E-08 127.42 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 0.91075 0.99294 19.935 7 Median NaN NaN NaN 0 0 Median 1.4315 1.2212 NaN 1 0 Median 0.87967 0.9589 4.9338 2 0 Median 0.89425 0.78526 NaN 1 0 Median 0.98806 1.0152 15.663 2 0 Median 1.7042 1.4097 NaN 1 0 Median 159240000 81239000 78006000 0 0 0 8186200 3318100 4868100 121140000 64645000 56496000 2257200 868470 1388700 27287000 12240000 15047000 373100 167510 205590 27778 2905;77 29238 146425;146426;146427;146428;146429;146430;146431 147380;147381;147382;147383;147384;147385;147386;147387 147383 8 QQNQELQEQLR KLQMEKAKTHYDAKKQQNQELQEQLRSLEQ DAKKQQNQELQEQLRSLEQLQKENKELRAE K Q Q L R S 0 1 1 0 0 5 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1412.7008 A0A087WY61;K4DIE0;Q14980 Q14980 1626 1636 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.2111E-05 127.3 By MS/MS By MS/MS 1 1 0.71729 0.76853 16.974 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79304 0.86654 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.64878 0.68161 NaN 1 1 Median NaN NaN NaN 0 0 Median 13385000 7947900 5436800 0 0 0 0 0 0 9969500 5772500 4197000 0 0 0 3415200 2175400 1239800 0 0 0 27779 2905;77 29239 146432;146433 147388;147389 147389 2 QQPPAVQFVPPLPEWK KCDAVLCTLPLGVLKQQPPAVQFVPPLPEW QPPAVQFVPPLPEWKTSAVQRMGFGNLNKV K Q Q W K T 1 0 0 0 0 3 1 0 0 0 1 1 0 1 5 0 0 1 0 2 0 0 16 0 1859.9934 O60341;R4GMQ1;R4GMP9 O60341 632 647 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.0050699 33.409 By MS/MS 1 0.42498 0.46725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42498 0.46725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3603200 2475100 1128100 0 0 0 0 0 0 3603200 2475100 1128100 0 0 0 0 0 0 0 0 0 27780 1613 29240 146434 147390;147391 147390 2 QQPTQFINPETPGYVGFANLPNQVHR ______________________________ PGYVGFANLPNQVHRKSVKKGFEFTLMVVG K Q Q H R K 1 1 3 0 0 4 1 2 1 1 1 0 0 2 4 0 2 0 1 2 0 0 26 0 2951.4678 Q15019;C9JB25;C9J938;C9IZU3;C9JZI2;F8WB65;C9JFT1;A0A1B0GXJ2;C9JT15;C9JSE7 Q15019 4 29 SEPT2 Septin-2 yes no 3;4 1.3208E-46 145.04 By MS/MS By MS/MS By matching 1 3 1 0.60396 0.58893 28.025 5 Median 0.3866 0.38425 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.60396 0.65546 18.613 3 2 Median 0.69 0.58893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153930000 98229000 55700000 8190400 6637400 1553000 0 0 0 140500000 88470000 52035000 5233800 3122400 2111400 0 0 0 0 0 0 27781 2914 29241 146435;146436;146437;146438;146439 147392;147393;147394;147395;147396;147397;147398 147395 7 QQQFENLDQQLR MTIKMNESDAWFEEKQQQFENLDQQLRKLH EEKQQQFENLDQQLRKLHVSVEALVCHRKE K Q Q L R K 0 1 1 1 0 5 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1545.7536 O60749 O60749 310 321 SNX2 Sorting nexin-2 yes yes 2 9.4184E-06 107.21 By MS/MS 1 1.4164 1.4523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4164 1.4523 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7206500 3059000 4147500 0 0 0 0 0 0 7206500 3059000 4147500 0 0 0 0 0 0 0 0 0 27782 1629 29242 146440 147399 147399 1 QQQFNVQALVAVGDHASK HTSRAKGKQCFLVLRQQQFNVQALVAVGDH FNVQALVAVGDHASKQMVKFAANINKESIV R Q Q S K Q 3 0 1 1 0 4 0 1 1 0 1 1 0 1 0 1 0 0 0 3 0 0 18 0 1938.9912 P14868;C9J7S3;H7C278;C9JLC1;C9JQM9 P14868 82 99 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 0.058058 8.8192 By MS/MS By matching 1 1 1.2343 1.1172 1.7989 2 Median 1.1587 1.1031 NaN 1 0 Median 1.3149 1.1315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5499800 2679800 2820100 3638500 1854900 1783600 1861300 824880 1036400 0 0 0 0 0 0 0 0 0 0 0 0 27783 2012 29243 146441;146442 147400 147400 1 QQQLLNEENLR YQDKLARQRYEDQLKQQQLLNEENLRKQEE DQLKQQQLLNEENLRKQEESVQKQEAMRRA K Q Q L R K 0 1 2 0 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1383.7106 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 133 143 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 2.8876E-27 175.51 By MS/MS By MS/MS By MS/MS 1 1 1 1.2518 1.0832 13.26 3 Median 1.0436 0.98624 NaN 1 1 Median 1.2518 1.0832 NaN 1 0 Median 1.2649 1.2813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49413000 21813000 27599000 21042000 9576600 11465000 9153200 3937400 5215800 19217000 8299100 10918000 0 0 0 0 0 0 0 0 0 27784 1140;4133;3098 29244 146443;146444;146445 147401;147402;147403;147404 147401 4 QQQLTAMK ACCRGYLARKAFAKRQQQLTAMKVLQRNCA RKAFAKRQQQLTAMKVLQRNCAAYLKLRNW R Q Q M K V 1 0 0 0 0 3 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 8 0 946.4906 P35579 P35579 803 810 MYH9 Myosin-9 no no 2 0.01208 55.676 By MS/MS 1 1.1041 0.98052 NaN 1 Median NaN NaN NaN 0 0 Median 1.1041 0.98052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3333000 1529600 1803400 0 0 0 3333000 1529600 1803400 0 0 0 0 0 0 0 0 0 0 0 0 27785 2244 29245 146446 147405;147406 147405 2 QQQVDIPLR QPRQGSPVAAGAPAKQQQVDIPLRLLVPTQ AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE K Q Q L R L 0 1 0 1 0 3 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1095.6037 Q9NZI8 Q9NZI8 191 199 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0012859 83.206 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0608 0.88762 15.442 5 Median 0.81636 0.76821 NaN 1 0 Median 1.1659 1.0209 19.785 2 0 Median NaN NaN NaN 0 0 Median 1.0608 0.88578 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0989 0.94418 NaN 1 0 Median 54930000 28467000 26463000 37297000 20585000 16711000 9669300 4226100 5443200 0 0 0 1418400 624390 793970 0 0 0 6545300 3030700 3514600 27786 4188 29246 146447;146448;146449;146450;146451 147407;147408;147409;147410;147411;147412 147408 6 QQQVEAVELEAK EKMLQDKVNKTSKERQQQVEAVELEAKEVL KERQQQVEAVELEAKEVLKKLFPKVSVPSN R Q Q A K E 2 0 0 0 0 3 3 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1370.7042 Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2 1062 1073 KTN1 Kinectin yes no 2 0.0057371 59.067 By MS/MS 1 1.1329 0.96178 NaN 1 Median NaN NaN NaN 0 0 Median 1.1329 0.96178 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6484100 3006800 3477200 0 0 0 6484100 3006800 3477200 0 0 0 0 0 0 0 0 0 0 0 0 27787 3280 29247 146452 147413 147413 1 QQREDITQSAQHALR PCEKEATDAIGHLDRQQREDITQSAQHALR QQREDITQSAQHALRLAAFGQLHKVLGMDP R Q Q L R L 2 2 0 1 0 4 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 15 1 1779.8976 Q12906 Q12906 309 323 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 4.7762E-10 113.25 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 3 1.1015 1.0756 21.769 9 Median 1.1061 1.1341 23.992 2 1 Median NaN NaN NaN 0 0 Median 0.90528 1.046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0279 1.1168 32.174 3 0 Median 1.1898 1.0756 20.264 3 0 Median 34620000 16315000 18305000 3411100 1632200 1778900 0 0 0 3614300 2185000 1429300 0 0 0 21337000 9613800 11723000 6257800 2884000 3373800 27788 2769 29248 146453;146454;146455;146456;146457;146458;146459;146460;146461 147414;147415;147416;147417;147418;147419;147420;147421;147422;147423;147424;147425 147422 12 QQSEEDLLLQDFSR ______________________________ KQQSEEDLLLQDFSRNLSAKSSALFFGNAF K Q Q S R N 0 1 0 2 0 3 2 0 0 0 3 0 0 1 0 2 0 0 0 0 0 0 14 0 1706.8111 C9JA28;Q9UNL2 C9JA28 9 22 SSR3 Translocon-associated protein subunit gamma yes no 2 6.9085E-08 101.47 By MS/MS By MS/MS 1 1 1.3719 1.2469 27.325 2 Median 1.0507 1.0278 NaN 1 0 Median 1.7913 1.5127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14161000 6275300 7885500 12634000 5859300 6774400 1527100 416040 1111100 0 0 0 0 0 0 0 0 0 0 0 0 27789 684 29249 146462;146463 147426;147427 147426 2 QQSHFAMMHGGTGFAGIDSSSPEVK TISPLDLAKLNQVARQQSHFAMMHGGTGFA GTGFAGIDSSSPEVKGYWASLDASTQTTHE R Q Q V K G 2 0 0 1 0 2 1 4 2 1 0 1 2 2 1 4 1 0 0 1 0 0 25 0 2605.169 Q15365 Q15365 244 268 PCBP1 Poly(rC)-binding protein 1 yes yes 3;4 6.8034E-25 103.02 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 5 1 2 0.89071 0.91506 14.55 11 Median 0.7975 0.73496 0.71721 2 1 Median 1.0633 0.94672 NaN 1 0 Median 0.89071 0.91752 18.77 5 0 Median 0.97671 0.8249 NaN 1 0 Median 0.88952 0.88979 5.3527 2 0 Median NaN NaN NaN 0 0 Median 315750000 162590000 153170000 55560000 30470000 25090000 494610 228520 266090 240530000 123260000 117280000 1747900 853910 893940 17416000 7779200 9637100 0 0 0 27790 2941 29250;29251 146464;146465;146466;146467;146468;146469;146470;146471;146472;146473;146474 147428;147429;147430;147431;147432;147433;147434;147435;147436;147437;147438;147439;147440;147441 147433 1625;1626 14 QQSIAGSADSKPIDVSR AKEKIEKKGEKKEKKQQSIAGSADSKPIDV SIAGSADSKPIDVSRLDLRIGCIITARKHP K Q Q S R L 2 1 0 2 0 2 0 1 0 2 0 1 0 0 1 4 0 0 0 1 0 0 17 1 1757.8908 Q12904 Q12904 138 154 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 3 0.0086771 24.287 By MS/MS By matching 1 1 1.237 1.2383 14.935 2 Median 1.0399 1.1142 NaN 1 0 Median 1.4714 1.3762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8911400 4205500 4705900 7010800 3401800 3609100 1900600 803720 1096800 0 0 0 0 0 0 0 0 0 0 0 0 27791 2768 29252 146475;146476 147442;147443 147442 2 QQTDIAVNWAGGLHHAK LSTGGSVASAVKLNKQQTDIAVNWAGGLHH TDIAVNWAGGLHHAKKSEASGFCYVNDIVL K Q Q A K K 3 0 1 1 0 2 0 2 2 1 1 1 0 0 0 0 1 1 0 1 0 0 17 0 1844.9282 Q13547;Q5TEE2 Q13547 127 143 HDAC1 Histone deacetylase 1 yes no 3;4 0.00012127 43.024 By MS/MS 2 1.1115 1.0779 27.202 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1115 1.0779 27.202 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34038000 16006000 18032000 0 0 0 0 0 0 34038000 16006000 18032000 0 0 0 0 0 0 0 0 0 27792 2823 29253 146477;146478 147444;147445 147445 2 QQTDMAVNWAGGLHHAK LSTGGSVAGAVKLNRQQTDMAVNWAGGLHH TDMAVNWAGGLHHAKKSEASGFCYVNDIVL R Q Q A K K 3 0 1 1 0 2 0 2 2 0 1 1 1 0 0 0 1 1 0 1 0 0 17 0 1862.8846 Q92769;H3BM24 Q92769 128 144 HDAC2 Histone deacetylase 2 yes no 3;4 0.00077904 34.498 By matching By MS/MS By matching 1 2 2 0.92653 0.90485 15.185 5 Linear 0.81513 0.78391 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89951 0.88515 13.222 2 0 Median NaN NaN NaN 0 0 Median 0.67993 0.67363 0.11343 2 0 Median NaN NaN NaN 0 0 Median 23714000 12265000 11450000 3277800 1582100 1695600 0 0 0 16320000 8424500 7896000 0 0 0 4116100 2258100 1858000 0 0 0 27793 3555 29254 146479;146480;146481;146482;146483 147446;147447 147446 2 QQTQHAVEGDCDIHVLK CHVLDPTPLANCSVRQQTQHAVEGDCDIHV TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS R Q Q L K Q 1 0 0 2 1 3 1 1 2 1 1 1 0 0 0 0 1 0 0 2 0 0 17 0 1976.9374 CON__P12763 CON__P12763 104 120 yes yes 3 2.9206E-05 58.83 By MS/MS 1 0.12861 0.10975 NaN 1 Median NaN NaN NaN 0 0 Median 0.12861 0.10975 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3360400 3199300 161080 0 0 0 3360400 3199300 161080 0 0 0 0 0 0 0 0 0 0 0 0 + 27794 755 29255 146484 147448 147448 1 QQTSLFIAR EDVLAVMDNKNPTIKQQTSLFIARSFRHCT KNPTIKQQTSLFIARSFRHCTASTLPKSLL K Q Q A R S 1 1 0 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1062.5822 Q14008 Q14008 414 422 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0073226 51.854 By MS/MS By MS/MS 1 1 1.1339 1.1113 25.987 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2206 1.3355 NaN 1 0 Median 1.0535 0.92475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10896000 5123900 5772100 0 0 0 0 0 0 8864400 4101000 4763300 2031600 1022900 1008700 0 0 0 0 0 0 27795 2850 29256 146485;146486 147449;147450;147451 147450 3 QQVAFYGQTLGQAQAHSQEQ SSPPDYTMAWAEYYRQQVAFYGQTLGQAQA YGQTLGQAQAHSQEQ_______________ R Q Q E Q - 3 0 0 0 0 7 1 2 1 0 1 0 0 1 0 1 1 0 1 1 0 0 20 0 2218.0403 Q96I24 Q96I24 553 572 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 4.8153E-25 120.14 By MS/MS By MS/MS 3 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41172000 0 0 0 0 0 0 0 0 39399000 0 0 0 0 0 1772600 0 0 0 0 0 27796 3673 29257 146487;146488;146489;146490 147452;147453;147454;147455 147453 4 QQVAPTDDETGKELVLALYDYQEK GSSIQALREQAQSCRQQVAPTDDETGKELV TGKELVLALYDYQEKSPREVTMKKGDILTL R Q Q E K S 2 0 0 3 0 3 3 1 0 0 3 2 0 0 1 0 2 0 2 2 0 0 24 1 2752.3443 A0A0D9SF54;Q13813 Q13813 958 981 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 2.0052E-16 69.548 By MS/MS By MS/MS 2 2 0.8953 0.95703 34.999 4 Median 1.136 1.1735 13.328 2 0 Median NaN NaN NaN 0 0 Median 0.60809 0.69989 28.74 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20740000 10849000 9891100 6417600 2785700 3632000 0 0 0 14322000 8063200 6259100 0 0 0 0 0 0 0 0 0 27797 264;2838 29258 146491;146492;146493;146494 147456;147457;147458;147459;147460 147459 5 QQVFIMAATNRPDIIDPAILR VVNQLLTEMDGLEARQQVFIMAATNRPDII AATNRPDIIDPAILRPGRLDKTLFVGLPPP R Q Q L R P 3 2 1 2 0 2 0 0 0 4 1 0 1 1 2 0 1 0 0 1 0 0 21 1 2381.2889 O15381 O15381 716 736 NVL Nuclear valosin-containing protein-like yes yes 6 0.06404 14.161 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 944820 0 944820 944820 0 944820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27798 1542 29259 146495 147461 147461 1 QQVFLLER VIPSVTRVLQQTMTKQQVFLLERWKQRMIL LQQTMTKQQVFLLERWKQRMILELGEDGFK K Q Q E R W 0 1 0 0 0 2 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1031.5764 Q9BQP7;Q5QPE7 Q9BQP7 144 151 MGME1 Mitochondrial genome maintenance exonuclease 1 yes no 2 0.024653 43.246 By MS/MS 1 1.0736 1.0352 NaN 1 Median 1.0736 1.0352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2504500 1166300 1338300 2504500 1166300 1338300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27799 3790 29260 146496 147462;147463 147462 2 QQVLPLDSIYKK TTDAARRIYDETQGRQQVLPLDSIYKKTLP QGRQQVLPLDSIYKKTLPDWKRSLPHFRNG R Q Q K K T 0 0 0 1 0 2 0 0 0 1 2 2 0 0 1 1 0 0 1 1 0 0 12 1 1430.8133 A6NHR9;J3KTL8;A0A2R8YCU7 A6NHR9 1771 1782 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.00051365 49.423 By MS/MS 2 0.76831 0.88243 0.65973 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76831 0.88243 0.65973 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8317000 4815400 3501600 0 0 0 0 0 0 8317000 4815400 3501600 0 0 0 0 0 0 0 0 0 27800 518 29261 146497;146498 147464 147464 1 QQVPSGESAILDR VCSTNDLKELLIFNKQQVPSGESAILDRVA NKQQVPSGESAILDRVADGMVFGALLPCEE K Q Q D R V 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 2 0 0 0 1 0 0 13 0 1398.7103 P09874 P09874 270 282 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 2.4951E-09 138.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 1 0.85066 0.8599 26.683 7 Median 0.7196 0.69316 NaN 1 0 Median 1.064 0.89641 NaN 1 0 Median 0.85066 0.9341 40.367 3 0 Plateau 1.0424 0.8959 6.1579 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 486980000 249930000 237050000 12891000 7388600 5502500 5656700 2540800 3115900 383970000 199320000 184660000 84457000 40682000 43775000 0 0 0 0 0 0 27801 1922 29262 146499;146500;146501;146502;146503;146504;146505;146506;146507 147465;147466;147467;147468;147469;147470;147471;147472;147473;147474;147475;147476;147477;147478;147479;147480;147481;147482;147483;147484 147475 20 QQYESVAAK DVSKPDLTAALRDVRQQYESVAAKNLQEAE ALRDVRQQYESVAAKNLQEAEEWYKSKFAD R Q Q A K N 2 0 0 0 0 2 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 9 0 1022.5033 P08670;B0YJC4;B0YJC5 P08670 274 282 VIM Vimentin yes no 2 0.0070414 52.716 By matching By MS/MS By matching By MS/MS 1 1 2 1 1.0298 1.0711 15.006 5 Median 1.0988 1.0711 NaN 1 0 Median 1.3138 1.1181 NaN 1 0 Median 1.0126 1.0349 5.4576 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92093 0.77105 NaN 1 1 Median 9526000 4386700 5139200 1612500 795680 816790 5098700 2232000 2866700 998770 441120 557650 0 0 0 0 0 0 1816100 917960 898110 27802 1907 29263 146508;146509;146510;146511;146512 147485;147486;147487 147486 3 QQYIEQSQAEIYHNR IGWVYGGIPAFIHAKQQYIEQSQAEIYHNR QQYIEQSQAEIYHNRFDAVQSAHRAATRGF K Q Q N R F 1 1 1 0 0 4 2 0 1 2 0 0 0 0 0 1 0 0 2 0 0 0 15 0 1905.8969 G3XA94;Q9NPL8 G3XA94 102 116 TIMMDC1 Complex I assembly factor TIMMDC1, mitochondrial yes no 3 0.00012213 49.482 By matching By MS/MS 1 1 1.4124 1.2775 48.958 2 Median 1.8716 1.8059 NaN 1 0 Median 1.0658 0.90366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4921900 2193200 2728800 2432700 880020 1552700 2489300 1313100 1176100 0 0 0 0 0 0 0 0 0 0 0 0 27803 1123 29264 146513;146514 147488 147488 1 QQYLQSIEER IEPYLKKKDESQEGKQQYLQSIEEREKLDG SQEGKQQYLQSIEEREKLDGLYECILCACC K Q Q E R E 0 1 0 0 0 3 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1292.6361 P21912;A0A087WWT1;A0A087WXX8 P21912 168 177 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 2 0.00040727 76.827 By matching By MS/MS 1 1 1.0579 0.94873 38.415 2 Median 0.76026 0.72306 NaN 1 0 Median 1.4722 1.2448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54560000 30311000 24249000 48607000 27822000 20784000 5953000 2488200 3464800 0 0 0 0 0 0 0 0 0 0 0 0 27804 2093 29265 146515;146516 147489 147489 1 QREEEIEAQEK KRKEREAKEMHERKRQREEEIEAQEKAKRE ERKRQREEEIEAQEKAKREREWQKNFEESR R Q R E K A 1 1 0 0 0 2 5 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 11 1 1387.6579 O75937;S4R3J5 O75937 191 201 DNAJC8 DnaJ homolog subfamily C member 8 yes no 2;3 6.784E-05 98.156 By MS/MS By matching By matching By MS/MS 3 3 2 2 1.1131 1.0892 8.7375 10 Median 1.1359 1.1204 10.362 3 0 Plateau 1.136 1.0567 4.1374 3 0 Median 1.082 1.1975 11.732 2 0 Median 1.1509 1.0862 7.8773 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10209000 4613100 5595500 2256600 1057900 1198700 1070500 498940 571600 1348700 624630 724060 5532800 2431600 3101200 0 0 0 0 0 0 27805 1709 29266 146517;146518;146519;146520;146521;146522;146523;146524;146525;146526 147490;147491;147492;147493;147494 147493 5 QREELGQGLQGVEQK EEVQQVRRSHQDFSRQREELGQGLQGVEQK QREELGQGLQGVEQKVQSLQATFGTFESIL R Q R Q K V 0 1 0 0 0 4 3 3 0 0 2 1 0 0 0 0 0 0 0 1 0 0 15 1 1697.8697 Q07065 Q07065 147 161 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 3.8933E-10 149.23 By MS/MS By MS/MS 2 1 1.1277 1.1303 33.11 3 Median 0.97605 0.97883 20.342 2 0 Median 1.8008 1.6407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38571000 16961000 21610000 26592000 12920000 13672000 11979000 4041400 7938000 0 0 0 0 0 0 0 0 0 0 0 0 27806 2730 29267 146527;146528;146529 147495;147496;147497;147498;147499 147495 5 QRELEIEER QERVKKLEEVERKKRQRELEIEERERRREE VERKKRQRELEIEERERRREEERRLGDSSL R Q R E R E 0 2 0 0 0 1 4 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 9 1 1200.6099 Q14152 Q14152 860 868 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.00030313 89.029 By MS/MS By MS/MS 1 2 1.0267 1.0979 19.669 3 Plateau 1.0267 1.0979 NaN 1 0 Median 0.77335 0.78095 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6173900 2972900 3200900 2153500 902850 1250600 4020400 2070100 1950300 0 0 0 0 0 0 0 0 0 0 0 0 27807 2860 29268 146530;146531;146532 147500;147501 147500 2 QRELEIEERER QERVKKLEEVERKKRQRELEIEERERRREE RKKRQRELEIEERERRREEERRLGDSSLSR R Q R E R R 0 3 0 0 0 1 5 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 2 1485.7536 Q14152 Q14152 860 870 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.00074833 54.343 By MS/MS 1 1.0958 1.2214 NaN 1 Median 1.0958 1.2214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2493600 1112000 1381600 2493600 1112000 1381600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27808 2860 29269 146533 147502 147502 1 QREMEEQMR QEEERRRREEEMMIRQREMEEQMRRQREES EEMMIRQREMEEQMRRQREESYSRMGYMDP R Q R M R R 0 2 0 0 0 2 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 9 1 1235.5387 P23246;H0Y9K7 P23246 582 590 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.00033984 85.676 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.2899 1.2507 9.0612 5 Median NaN NaN NaN 0 0 Median 1.2899 1.2762 NaN 1 0 Median 1.1738 1.3329 16.874 2 0 Median 1.4066 1.2464 NaN 1 0 Median 1.1511 1.2507 NaN 1 0 Median NaN NaN NaN 0 0 Median 2473800 1124900 1348900 0 0 0 539230 232320 306910 1346800 624820 721960 111530 41326 70209 476280 226440 249840 0 0 0 27809 2107 29270 146534;146535;146536;146537;146538 147503;147504;147505;147506 147504 4 QRHDGAFLIR FGKIPRAKAEEMLSKQRHDGAFLIRESESA EMLSKQRHDGAFLIRESESAPGDFSLSVKF K Q R I R E 1 2 0 1 0 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1211.6523 P62993;J3KT38;J3QRL5 P62993 77 86 GRB2 Growth factor receptor-bound protein 2 yes no 3 0.00013518 74.841 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0667 1.0402 18.446 5 Median 1.0667 1.1402 NaN 1 0 Median 1.2249 1.0402 NaN 1 0 Median 0.82754 0.85802 NaN 1 0 Median 1.0646 0.9533 NaN 1 0 Median 1.2842 1.3927 NaN 1 0 Median NaN NaN NaN 0 0 Median 19262000 9394800 9867000 9109800 4286500 4823300 1872600 811790 1060800 5755000 3163500 2591500 835810 380270 455540 1688500 752710 935820 0 0 0 27810 2613 29271 146539;146540;146541;146542;146543 147507;147508;147509;147510 147509 3 QRHELLLGAGSGPGAGQQQATPGALLQAGPPR QKRKGPELPLVPVKRQRHELLLGAGSGPGA QQATPGALLQAGPPRCSSLQAPIMLLSGHE R Q R P R C 5 2 0 0 0 5 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 32 1 3132.6541 Q96DI7 Q96DI7 20 51 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 4 2.6513E-65 124.03 By MS/MS By MS/MS 1 1 0.43751 0.4576 7.0847 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42466 0.43524 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45075 0.48111 NaN 1 0 Median NaN NaN NaN 0 0 Median 20805000 13461000 7343900 0 0 0 0 0 0 14038000 9156500 4881300 0 0 0 6766800 4304200 2462600 0 0 0 27811 3627 29272 146544;146545 147511;147512;147513 147512 3 QRIDEFEAL DKYKTLRQIRQGNTKQRIDEFEAL______ RQGNTKQRIDEFEAL_______________ K Q R A L - 1 1 0 1 0 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 1 1119.556 P15311;E7EQR4 P15311 578 586 EZR Ezrin yes no 2 0.0019736 130.77 By MS/MS By matching By MS/MS By matching 1 2 2 1 1.221 1.0697 9.9017 6 Median 1.1169 1.0567 NaN 1 0 Median 1.2358 1.0619 2.7532 2 0 Median 1.2726 1.2624 7.8429 2 0 Median 1.2161 1.0479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49765000 22955000 26810000 13090000 6212100 6878300 2948100 1382400 1565700 31526000 14422000 17104000 2200200 938330 1261900 0 0 0 0 0 0 27812 879 29273 146546;146547;146548;146549;146550;146551 147514;147515;147516 147516 3 QRIDEFEAM DKYKTLRQIRQGNTKQRIDEFEAM______ RQGNTKQRIDEFEAM_______________ K Q R A M - 1 1 0 1 0 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 9 1 1137.5125 P35241 P35241 575 583 RDX Radixin yes yes 2 0.0040038 94.662 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0831 1.0119 9.432 4 Median 1.1021 1.0473 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0314 1.0621 NaN 1 0 Median 1.1459 0.97767 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0645 0.86396 NaN 1 0 Median 15624000 7745600 7878300 6617400 3191100 3426300 0 0 0 6741000 3473500 3267500 313010 137560 175460 0 0 0 1952500 943470 1009000 27813 2235 29274 146552;146553;146554;146555 147517;147518;147519;147520 147520 4 QRIDEFESM DKYKTLRQIRQGNTKQRIDEFESM______ RQGNTKQRIDEFESM_______________ K Q R S M - 0 1 0 1 0 1 2 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 9 1 1153.5074 P26038 P26038 569 577 MSN Moesin yes yes 2 0.0026365 114.6 By MS/MS By matching By MS/MS By matching 3 2 2 2 1.1369 1.0982 10.513 9 Median 0.97963 0.94705 3.9659 3 0 Median 1.294 1.1179 2.5169 2 0 Median 1.1481 1.1679 1.9251 2 0 Median 1.2141 1.0155 16.158 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60101000 27550000 32550000 23761000 11334000 12426000 6846500 3106100 3740400 27458000 12229000 15230000 2035300 881160 1154100 0 0 0 0 0 0 27814 2139 29275;29276 146556;146557;146558;146559;146560;146561;146562;146563;146564 147521;147522;147523;147524;147525;147526 147524 902 6 QRLEMNLGLQK IRLWEYLLELLRARRQRLEMNLGLQKIFQE RARRQRLEMNLGLQKIFQEMLYIMDWMDEM R Q R Q K I 0 1 1 0 0 2 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 11 1 1328.7235 Q01082;A0A087WUZ3;F8W6C1 Q01082 522 532 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.00025234 62.633 By MS/MS 1 0.96336 1.1552 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96336 1.1552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5930800 3155600 2775200 0 0 0 0 0 0 5930800 3155600 2775200 0 0 0 0 0 0 0 0 0 27815 2681 29277 146565 147527 147527 1 QRMESALDQLK ______________________________ PVKRQRMESALDQLKQFTTVVADTGDFHAI R Q R L K Q 1 1 0 1 0 2 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 11 1 1317.6711 P37837;F2Z393;E9PM01;E9PKI8 P37837 9 19 TALDO1 Transaldolase yes no 2 0.0014192 94.692 By MS/MS 1 0.72548 0.77736 NaN 1 Median 0.72548 0.77736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11173000 6141900 5031100 11173000 6141900 5031100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27816 2270 29278 146566 147528 147528 1 QRPAEIKDYSPYFK ANADLEVKIRDWYQRQRPAEIKDYSPYFKT RQRPAEIKDYSPYFKTIEDLRNKILTATVD R Q R F K T 1 1 0 1 0 1 1 0 0 1 0 2 0 1 2 1 0 0 2 0 0 0 14 2 1740.8835 P02533;CON__P02533 P02533 154 167 KRT14 Keratin, type I cytoskeletal 14 yes no 4 0.00034019 62.891 By MS/MS 1 0.15791 0.20955 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15791 0.20955 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3506500 3265300 241190 0 0 0 0 0 0 3506500 3265300 241190 0 0 0 0 0 0 0 0 0 + 27817 739 29279 146567 147529 147529 1 QRPSEIKDYSPYFK ANADLEVKIRDWYQRQRPSEIKDYSPYFKT RQRPSEIKDYSPYFKTIEDLRNKIIAATIE R Q R F K T 0 1 0 1 0 1 1 0 0 1 0 2 0 1 2 2 0 0 2 0 0 0 14 2 1756.8784 CON__P08779;P08779 CON__P08779 156 169 KRT16 Keratin, type I cytoskeletal 16 yes no 3;4 8.9393E-06 94.688 By MS/MS 3 0.29192 0.32728 223.88 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29192 0.32728 223.88 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34581000 19510000 15071000 0 0 0 0 0 0 34581000 19510000 15071000 0 0 0 0 0 0 0 0 0 + 27818 754 29280 146568;146569;146570 147530;147531;147532 147530 3 QRQPPLLGDHPAEYGEGR NLSGQGDPGSNPNKRQRQPPLLGDHPAEYG PPLLGDHPAEYGEGRGFPSVDSRGSCAPAR R Q R G R G 1 2 0 1 0 2 2 3 1 0 2 0 0 0 3 0 0 0 1 0 0 0 18 1 2018.9922 A0A3B3ITJ4 A0A3B3ITJ4 215 232 yes yes 3;4 1.6509E-06 75.548 By MS/MS By MS/MS 2 4 0.5662 0.61322 8.5747 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60057 0.67018 1.8232 2 0 Median NaN NaN NaN 0 0 Median 0.53975 0.58206 5.9834 4 0 Median NaN NaN NaN 0 0 Median 46571000 28517000 18054000 0 0 0 0 0 0 17660000 10517000 7143200 0 0 0 28911000 18001000 10911000 0 0 0 27819 436 29281 146571;146572;146573;146574;146575;146576 147533;147534;147535 147533 2 QRVEDAFYTLVREIR RSYGIPFIETSAKTRQRVEDAFYTLVREIR QRVEDAFYTLVREIRQYRLKKISKEEKTPG R Q R I R Q 1 3 0 1 0 1 2 0 0 1 1 0 0 1 0 0 1 0 1 2 0 0 15 2 1894.0061 P01116 P01116 150 164 KRAS GTPase KRas;GTPase KRas, N-terminally processed yes yes 4 0.044459 23.138 By MS/MS 1 0.046434 0.045653 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.046434 0.045653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1649000 1597900 51176 0 0 0 0 0 0 0 0 0 1649000 1597900 51176 0 0 0 0 0 0 27820 1833 29282 146577 147536 147536 1 QRVESHFDLELR FEGRHSKGVAKTVTKQRVESHFDLELRAAV VTKQRVESHFDLELRAAVMHDILDMMPEGI K Q R L R A 0 2 0 1 0 1 2 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 12 1 1527.7794 Q6P2Q9;I3L0J9 Q6P2Q9 675 686 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 9.1761E-06 89.189 By matching By MS/MS 1 2 1.1561 1.3437 16.375 2 Median 1.4108 1.5087 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94741 1.1968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10500000 5694700 4805700 2540200 903600 1636600 0 0 0 7960300 4791200 3169100 0 0 0 0 0 0 0 0 0 27821 3157 29283 146578;146579;146580 147537;147538 147538 2 QRWDEAFRK YVPNAGRGLVRLEYRQRWDEAFRKFLKGLA VRLEYRQRWDEAFRKFLKGLASRKPLVLCG R Q R R K F 1 2 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 9 2 1234.6207 G3V3M6;P27695;G3V5Q1;H7C4A8 G3V3M6 186 194 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 3 0.00085069 70.908 By matching By matching By MS/MS 1 1 1 1.4062 1.2894 24.578 3 Plateau 1.143 1.2886 NaN 1 0 Median 0.71778 0.8421 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4261 1.2894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3442400 1519000 1923400 1188500 529650 658890 341630 158560 183070 0 0 0 1912200 830840 1081400 0 0 0 0 0 0 27822 1112 29284 146581;146582;146583 147539;147540 147540 2 QRYEDQLKQQQLLNEENLR RQHQARAQYQDKLARQRYEDQLKQQQLLNE DQLKQQQLLNEENLRKQEESVQKQEAMRRA R Q R L R K 0 2 2 1 0 5 3 0 0 0 4 1 0 0 0 0 0 0 1 0 0 0 19 2 2444.2408 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 125 143 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 4 0.012182 30.428 By MS/MS 1 1.6736 1.6895 NaN 1 Median 1.6736 1.6895 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7088000 2117900 4970100 7088000 2117900 4970100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27823 1140;4133;3098 29285 146584 147541 147541 1 QRYEILTPNAIPK CRQGFPNRIVFQEFRQRYEILTPNAIPKGF FRQRYEILTPNAIPKGFMDGKQACERMIRA R Q R P K G 1 1 1 0 0 1 1 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 13 1 1541.8566 Q7Z406;P35580 P35580 726 738 MYH14;MYH10 Myosin-14;Myosin-10 no no 3 0.0014297 40.516 By MS/MS By MS/MS By MS/MS 1 1 1 0.84896 0.85523 24.294 3 Median 0.84896 0.85523 NaN 1 0 Median 1.0135 0.96554 NaN 1 0 Median 0.50425 0.6046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14214000 8240400 5973400 7106400 3762900 3343500 2201500 1007300 1194200 4905800 3470100 1435700 0 0 0 0 0 0 0 0 0 27824 2245;3242 29286 146585;146586;146587 147542;147543;147544 147542 3 QRYEILTPNSIPK CRQGFPNRVVFQEFRQRYEILTPNSIPKGF FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Q R P K G 0 1 1 0 0 1 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 13 1 1557.8515 P35579 P35579 719 731 MYH9 Myosin-9 yes yes 2;3 3.5247E-06 112.13 By MS/MS By MS/MS By MS/MS 2 3 1 0.76769 0.77278 64.912 6 Median 0.86574 0.86659 10.202 2 0 Median 0.75427 0.70989 84.406 3 0 Median 0.73116 0.87616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60049000 32170000 27879000 42397000 22153000 20245000 13042000 7631800 5409800 4610100 2385900 2224200 0 0 0 0 0 0 0 0 0 27825 2244 29287 146588;146589;146590;146591;146592;146593 147545;147546;147547;147548;147549;147550;147551;147552 147548 8 QSAEQLEDK HGTALFSTAVEMKIKQSAEQLEDKKRKAAK VEMKIKQSAEQLEDKKRKAAKMLENIIDLF K Q S D K K 1 0 0 1 0 2 2 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1046.488 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27 H0Y987 389 397 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.04318 32.841 By matching By MS/MS 1 1 1.0672 0.97661 5.9914 2 Median 0.966 0.9361 NaN 1 0 Median 1.179 1.0189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2845900 1191700 1654200 1012200 362380 649790 1833700 829290 1004400 0 0 0 0 0 0 0 0 0 0 0 0 27826 1165 29288 146594;146595 147553 147553 1 QSALMVNGVLK SYYAVAHAVTERVDKQSALMVNGVLKQYQI RVDKQSALMVNGVLKQYQIKGLEWLVSLYN K Q S L K Q 1 0 1 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 0 2 0 0 11 0 1158.6431 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3 P51532 745 755 SMARCA4 Transcription activator BRG1 yes no 2 0.033681 30.189 By MS/MS 1 1.0392 1.158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0392 1.158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4066400 1873900 2192500 0 0 0 0 0 0 4066400 1873900 2192500 0 0 0 0 0 0 0 0 0 27827 366 29289 146596 147554 147554 1 QSANDFFSYYDSHR YWRLPGLGIIIYLLKQSANDFFSYYDSHRQ KQSANDFFSYYDSHRQSVSKLQNVEQLPPD K Q S H R Q 1 1 1 2 0 1 0 0 1 0 0 0 0 2 0 3 0 0 2 0 0 0 14 0 1735.7227 Q92621 Q92621 1821 1834 NUP205 Nuclear pore complex protein Nup205 yes yes 3 6.3138E-05 76.588 By MS/MS 1 1.158 1.2622 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.158 1.2622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19962000 9284000 10678000 0 0 0 0 0 0 19962000 9284000 10678000 0 0 0 0 0 0 0 0 0 27828 3547 29290 146597 147555;147556 147556 2 QSAQLTALAAQQQAAGKEEK EVFWRNYFYRVSLIKQSAQLTALAAQQQAA TALAAQQQAAGKEEKSNGREQDLPLAEAVR K Q S E K S 6 0 0 0 0 5 2 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 20 1 2070.0705 Q96A49 Q96A49 211 230 SYAP1 Synapse-associated protein 1 yes yes 3 0.069294 7.8971 By MS/MS 1 1.8249 1.8735 NaN 1 Median 1.8249 1.8735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14534000 5292400 9242000 14534000 5292400 9242000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27829 3594 29291 146598 147557 147557 1 QSDDEVYAPGLDIESSLK DPRWLEQRDRSIREKQSDDEVYAPGLDIES DEVYAPGLDIESSLKQLAERRTDIFGVEET K Q S L K Q 1 0 0 3 0 1 2 1 0 1 2 1 0 0 1 3 0 0 1 1 0 0 18 0 1964.9215 Q15459 Q15459 450 467 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.0020625 34.179 By MS/MS By matching 1 1 0.81646 0.79805 28.868 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89556 0.97877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74435 0.65069 NaN 1 0 Median 3022100 1575200 1446900 0 0 0 0 0 0 2916900 1525600 1391200 0 0 0 0 0 0 105250 49536 55710 27830 2954 29292 146599;146600 147558;147559 147559 2 QSDVMIVAGTLTNK YDMDRFGVVFRASPRQSDVMIVAGTLTNKM RQSDVMIVAGTLTNKMAPALRKSSLRPDAG R Q S N K M 1 0 1 1 0 1 0 1 0 1 1 1 1 0 0 1 2 0 0 2 0 0 14 0 1475.7654 A0A087WXF6;A0A087WTI3;O75251;F5H5N1;F5GXJ1 A0A087WXF6 116 129 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 2 0.017106 45.433 By MS/MS 1 1.0495 0.99198 NaN 1 Median 1.0495 0.99198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5711000 3060100 2650900 5711000 3060100 2650900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27831 18 29293 146601 147560 147560 1 QSEAEVVTEIQLEK EASSAARRGATVEAKQSEAEVVTEIQLEKD KQSEAEVVTEIQLEKDQPLVKERDNDTKVK K Q S E K D 1 0 0 0 0 2 4 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 14 0 1601.8148 Q14676 Q14676 247 260 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0025686 58.274 By MS/MS 1 0.85363 0.95145 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85363 0.95145 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184400 1635000 1549400 0 0 0 0 0 0 3184400 1635000 1549400 0 0 0 0 0 0 0 0 0 27832 2887 29294 146602 147561 147561 1 QSEPAAPPLEVSEEQVAR PPLRQRQNVNYQGGRQSEPAAPPLEVSEEQ PAAPPLEVSEEQVARLMEMGFSRGDALEAL R Q S A R L 3 1 0 0 0 2 4 0 0 0 1 0 0 0 3 2 0 0 0 2 0 0 18 0 1935.9538 Q8NBM4;X6R5E5 Q8NBM4 295 312 UBAC2 Ubiquitin-associated domain-containing protein 2 yes no 2 4.0369E-15 113.76 By MS/MS 1 0.65514 0.64386 NaN 1 Median 0.65514 0.64386 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9590700 5815500 3775300 9590700 5815500 3775300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27833 3406 29295 146603 147562 147562 1 QSFTMVADTPENLR KGYEKKPYCNAHYPKQSFTMVADTPENLRL KQSFTMVADTPENLRLKQQSELQSQVRYKE K Q S L R L 1 1 1 1 0 1 1 0 0 0 1 0 1 1 1 1 2 0 0 1 0 0 14 0 1607.7614 Q14847;C9J9W2;F6S2S5 Q14847 60 73 LASP1 LIM and SH3 domain protein 1 yes no 2 8.1324E-07 128.01 By MS/MS By matching By MS/MS 3 1 1 0.97615 0.88962 39.157 5 Median 0.95093 0.88962 36.773 3 0 Median 0.97615 0.81637 NaN 1 0 Median 1.6022 1.5846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41501000 19667000 21834000 36799000 17986000 18813000 607180 268810 338380 4094600 1411700 2683000 0 0 0 0 0 0 0 0 0 27834 2901 29296 146604;146605;146606;146607;146608 147563;147564;147565;147566 147564 4 QSFVLKEGVEYR PLELDLTGDLESFKKQSFVLKEGVEYRIKI FKKQSFVLKEGVEYRIKISFRVNREIVSGM K Q S Y R I 0 1 0 0 0 1 2 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 12 1 1453.7565 J3KTF8;J3QQX2;P52565;J3KRY1 J3KTF8 100 111 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 3 0.0065688 47.712 By MS/MS 1 1.2931 1.3526 NaN 1 Median 1.2931 1.3526 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8359500 3504400 4855100 8359500 3504400 4855100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27835 1336 29297 146609 147567 147567 1 QSGEAFVELGSEDDVK DGAAGVHFIYTREGRQSGEAFVELGSEDDV SGEAFVELGSEDDVKMALKKDRESMGHRYI R Q S V K M 1 0 0 2 0 1 3 2 0 0 1 1 0 1 0 2 0 0 0 2 0 0 16 0 1708.7792 P52597;A0A1B0GW42 P52597 53 68 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 1.2992E-09 130.1 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 1.126 1.0276 9.9826 8 Median 0.92151 0.85613 NaN 1 0 Median 1.2112 1.0474 10.455 2 0 Median 1.0216 1.0234 15.743 2 0 Median 1.1772 1.0276 1.5051 2 0 Median 1.1164 1.0666 NaN 1 1 Median NaN NaN NaN 0 0 Median 98518000 48309000 50209000 10912000 5710900 5201300 2095300 1089700 1005600 60598000 29310000 31288000 5267900 2437300 2830600 19644000 9761400 9883100 0 0 0 27836 2452 29298 146610;146611;146612;146613;146614;146615;146616;146617 147568;147569;147570;147571;147572;147573;147574;147575;147576;147577;147578 147573 11 QSGESIDIITR FILTAKYNACILEYKQSGESIDIITRAHGN LEYKQSGESIDIITRAHGNVQDRIGRPSET K Q S T R A 0 1 0 1 0 1 1 1 0 3 0 0 0 0 0 2 1 0 0 0 0 0 11 0 1217.6252 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 93 103 DDB1 DNA damage-binding protein 1 yes no 2 0.00013748 85.533 By MS/MS By MS/MS By matching 1 2 1 1.0274 1.1296 9.1471 3 Median NaN NaN NaN 0 0 Median 1.3767 1.159 NaN 1 0 Median 0.96833 1.0511 10.184 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24983000 11011000 13972000 0 0 0 5920200 2334800 3585500 18779000 8485800 10293000 0 0 0 0 0 0 284110 189990 94119 27837 2985 29299 146618;146619;146620;146621 147579;147580;147581;147582 147580 4 QSGFVPESMFDR NPEFAVAPDWTDIVKQSGFVPESMFDRLLT IVKQSGFVPESMFDRLLTGPVVRGEGASRR K Q S D R L 0 1 0 1 0 1 1 1 0 0 0 0 1 2 1 2 0 0 0 1 0 0 12 0 1398.6238 Q9P2D1 Q9P2D1 2691 2702 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.0011435 56.548 By MS/MS 2 0.88631 0.9654 17.705 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88631 0.9654 17.705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6275700 3468300 2807400 0 0 0 0 0 0 6275700 3468300 2807400 0 0 0 0 0 0 0 0 0 27838 4220 29300 146622;146623 147583;147584 147583 2 QSGQTDPLQKEELQSGVDAANSAAQQYQR DWYLKQLLSDKQQKRQSGQTDPLQKEELQS SGVDAANSAAQQYQRRLAAVALINAAIQKG R Q S Q R R 4 1 1 2 0 7 2 2 0 0 2 1 0 0 1 3 1 0 1 1 0 0 29 1 3146.4865 P46940;A0A0J9YXZ5 P46940 359 387 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.062366 15.888 By MS/MS 1 0.8796 0.84501 NaN 1 Median NaN NaN NaN 0 0 Median 0.8796 0.84501 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 957510 338820 618690 0 0 0 957510 338820 618690 0 0 0 0 0 0 0 0 0 0 0 0 27839 2350 29301 146624 147585 147585 1 QSGSLPLSSLTHVLR PYTEETSYENSLLVKQSGSLPLSSLTHVLR QSGSLPLSSLTHVLRSLTPNARGIFRLLIK K Q S L R S 0 1 0 0 0 1 0 1 1 0 4 0 0 0 1 4 1 0 0 1 0 0 15 0 1593.8839 Q13416 Q13416 468 482 ORC2 Origin recognition complex subunit 2 yes yes 3 0.00022012 45.864 By MS/MS 1 0.89265 0.91512 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89265 0.91512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7227700 3589600 3638100 0 0 0 0 0 0 7227700 3589600 3638100 0 0 0 0 0 0 0 0 0 27840 2813 29302 146625 147586;147587 147587 2 QSGYGGQTKPIFR KDSLYAQGKRRYDRKQSGYGGQTKPIFRKK RKQSGYGGQTKPIFRKKAKTTKKIVLRLEC K Q S F R K 0 1 0 0 0 2 0 3 0 1 0 1 0 1 1 1 1 0 1 0 0 0 13 1 1437.7365 J3KQN4;Q969Q0;P83881;H7BY91;H0Y3V9;H0Y5B4;H7BZ11 J3KQN4 81 93 RPL36A;RPL36AL;RPL36A-HNRNPH2 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 3 0.00063801 49.448 By MS/MS By MS/MS 1 1 1.0561 0.98763 16.971 2 Median 1.1234 1.1136 NaN 1 0 Median 0.99278 0.87595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4899400 2283200 2616100 2255100 1070600 1184500 2644300 1212600 1431700 0 0 0 0 0 0 0 0 0 0 0 0 27841 1321 29303 146626;146627 147588;147589;147590 147590 3 QSHAASAAPQASSPPDYTMAWAEYYR SQPNYSKAWEDYYKKQSHAASAAPQASSPP SSPPDYTMAWAEYYRQQVAFYGQTLGQAQA K Q S Y R Q 7 1 0 1 0 2 1 0 1 0 0 0 1 0 3 4 1 1 3 0 0 0 26 0 2855.2609 Q96I24 Q96I24 527 552 FUBP3 Far upstream element-binding protein 3 yes yes 3 2.7748E-25 75.226 By MS/MS By matching 1 1 0.43088 0.44888 46.62 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61391 0.62417 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.30242 0.32283 NaN 1 0 Median NaN NaN NaN 0 0 Median 14479000 8854100 5624900 0 0 0 0 0 0 13170000 7913300 5256900 0 0 0 1308700 940750 367950 0 0 0 27842 3673 29304 146628;146629 147591;147592 147591 2 QSIINPDWNFEK SSLNLIGKAKTKENRQSIINPDWNFEKMGI ENRQSIINPDWNFEKMGIGGLDKEFSDIFR R Q S E K M 0 0 2 1 0 1 1 0 0 2 0 1 0 1 1 1 0 1 0 0 0 0 12 0 1489.7201 I3L0N3;P46459 I3L0N3 201 212 NSF Vesicle-fusing ATPase yes no 2 8.7651E-05 104.52 By MS/MS 1 0.8289 0.75968 NaN 1 Median 0.8289 0.75968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7915300 4503700 3411600 7915300 4503700 3411600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27843 1272 29305 146630 147593 147593 1 QSILNSLSR VLAVIQVCLEGEISRQSILNSLSRGKKASG EGEISRQSILNSLSRGKKASGDLIPWTVSE R Q S S R G 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 3 0 0 0 0 0 0 9 0 1016.5615 Q9H0A0;A0A087WV29 Q9H0A0 588 596 NAT10 N-acetyltransferase 10 yes no 2 0.00047794 122.13 By matching By MS/MS 1 1 1.2108 1.177 1.7631 2 Median NaN NaN NaN 0 0 Median 1.3532 1.1624 NaN 1 0 Median 1.0834 1.1918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6296300 3092000 3204300 0 0 0 1836900 776160 1060700 4459500 2315800 2143600 0 0 0 0 0 0 0 0 0 27844 3921 29306 146631;146632 147594;147595 147594 2 QSIPSVLQGEVAR PVVCTRKRRLEDDERQSIPSVLQGEVARLD ERQSIPSVLQGEVARLDPKFLVNLDPSHCS R Q S A R L 1 1 0 0 0 2 1 1 0 1 1 0 0 0 1 2 0 0 0 2 0 0 13 0 1382.7518 Q96RN5;G3V1P5 Q96RN5 672 684 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 2 2.0999E-05 94.297 By MS/MS 1 0.84479 0.90246 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84479 0.90246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2015700 1098800 916930 0 0 0 0 0 0 2015700 1098800 916930 0 0 0 0 0 0 0 0 0 27845 3727 29307 146633 147596 147596 1 QSIWTSTISSHLATK AKSKSLFKNCDLMWKQSIWTSTISSHLATK QSIWTSTISSHLATKHLKEGGLLTLAGAKA K Q S T K H 1 0 0 0 0 1 0 0 1 2 1 1 0 0 0 4 3 1 0 0 0 0 15 0 1658.8628 P09417;B7Z415;D6RGG7;H0Y8F7 P09417 110 124 QDPR Dihydropteridine reductase yes no 3 0.00077907 37.583 By MS/MS By matching 1 1 1.1271 1.0054 1.0764 2 Median 1.0719 0.99782 NaN 1 0 Median 1.1852 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16822000 7858500 8963800 16196000 7600700 8595400 626220 257800 368430 0 0 0 0 0 0 0 0 0 0 0 0 27846 1914 29308 146634;146635 147597;147598 147597 2 QSKPVTTPEEIAQVATISANGDKEIGNIISDAMK GVMLAVDAVIAELKKQSKPVTTPEEIAQVA NGDKEIGNIISDAMKKVGRKGVITVKDGKT K Q S M K K 4 0 2 2 0 2 3 2 0 5 0 3 1 0 2 3 3 0 0 2 0 0 34 2 3554.8138 P10809;E7ESH4;E7EXB4 P10809 158 191 HSPD1 60 kDa heat shock protein, mitochondrial yes no 4 0.0057552 20.869 By MS/MS 1 0.71463 0.72925 NaN 1 Median 0.71463 0.72925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3761100 2043200 1717900 3761100 2043200 1717900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27847 1947 29309 146636 147599 147599 1 QSLEASLAETEGR VQALEIELQSQLALKQSLEASLAETEGRYC LKQSLEASLAETEGRYCVQLSQIQAQISAL K Q S G R Y 2 1 0 0 0 1 3 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1389.6736 P13645;CON__P13645;CON__P02535-1 P13645 387 399 KRT10 Keratin, type I cytoskeletal 10 no no 2 1.6495E-65 209.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 4 4 4 0.087232 0.082392 109.63 22 Median 0.18327 0.17413 72.542 8 8 Median 0.044723 0.037714 55.216 4 4 Median 0.097539 0.096173 90.079 4 4 Median 0.050454 0.040263 154.17 4 4 Median 0.046991 0.049688 17.697 2 2 Median NaN NaN NaN 0 0 Median 394760000 340970000 53787000 135710000 112450000 23258000 107290000 98413000 8874600 67285000 54926000 12359000 49070000 41364000 7706100 35405000 33815000 1589300 0 0 0 + 27848 756;740 29310 146637;146638;146639;146640;146641;146642;146643;146644;146645;146646;146647;146648;146649;146650;146651;146652;146653;146654;146655;146656;146657;146658;146659;146660;146661 147600;147601;147602;147603;147604;147605;147606;147607;147608;147609;147610;147611;147612;147613;147614;147615;147616;147617;147618;147619;147620;147621;147622;147623;147624;147625;147626;147627;147628 147604 29 QSLEYLEQVR RAALGRMCTVIKRQKQSLEYLEQVRQHLSR IKRQKQSLEYLEQVRQHLSRLPTIDPNTRT K Q S V R Q 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1263.6459 Q9BZE4;Q5T3R7 Q9BZE4 146 155 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 2.4144E-07 129.1 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27849 3898 29311 146662 147629 147629 1 QSLGELIGTLNAAK RKFFVGGNWKMNGRKQSLGELIGTLNAAKV KQSLGELIGTLNAAKVPADTEVVCAPPTAY K Q S A K V 2 0 1 0 0 1 1 2 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1413.7827 P60174 P60174 57 70 TPI1 Triosephosphate isomerase yes yes 2;3 3.0933E-07 157.97 By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 5 1 1 1 1.0907 0.98297 29.707 12 Median 0.99771 0.95329 4.4584 4 0 Median 1.1918 1.0678 42.906 5 0 Median 1.0917 0.98692 NaN 1 0 Median 1.185 0.97717 NaN 1 0 Median 1.0103 1.0365 NaN 1 1 Median NaN NaN NaN 0 0 Median 398270000 189860000 208410000 295400000 143860000 151540000 97872000 43572000 54300000 158840 82056 76782 571250 257930 313320 4274500 2085900 2188600 0 0 0 27850 2523 29312 146663;146664;146665;146666;146667;146668;146669;146670;146671;146672;146673;146674 147630;147631;147632;147633;147634;147635;147636;147637;147638;147639;147640 147632 11 QSLHTYLR IESFSSRVVSLSEYRQSLHTYLRSKMSQVA VSLSEYRQSLHTYLRSKMSQVAPSLSALIG R Q S L R S 0 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 8 0 1016.5403 O00567;A0A494C128;H0YDU4;H0Y653 O00567 279 286 NOP56 Nucleolar protein 56 yes no 2 0.023904 43.808 By MS/MS By matching 1 1 1.5471 1.6355 9.7162 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4464 1.5269 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6549 1.7518 NaN 1 0 Median NaN NaN NaN 0 0 Median 6531400 3147100 3384400 0 0 0 0 0 0 3647300 1520500 2126800 0 0 0 2884200 1626600 1257600 0 0 0 27851 1472 29313 146675;146676 147641 147641 1 QSLIDWNNPAIINK RHSVATAADLELKSKQSLIDWNNPAIINKM KQSLIDWNNPAIINKMYKVYLGDIPLKTKE K Q S N K M 1 0 3 1 0 1 0 0 0 3 1 1 0 0 1 1 0 1 0 0 0 0 14 0 1624.8573 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 288 301 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0025887 58.246 By MS/MS 2 0.96644 0.93186 4.2863 2 Median 0.96644 0.93186 4.2863 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14301000 7381100 6919600 14301000 7381100 6919600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27852 3116 29314 146677;146678 147642;147643 147642 2 QSLLDMAQTWGEFR VTPPLNGVILPGVVRQSLLDMAQTWGEFRV RQSLLDMAQTWGEFRVVERTITMKQLLRAL R Q S F R V 1 1 0 1 0 2 1 1 0 0 2 0 1 1 0 1 1 1 0 0 0 0 14 0 1680.793 O15382;B3KSI3;M0QZ10;M0QXF9;M0QZP4 O15382 299 312 BCAT2 Branched-chain-amino-acid aminotransferase, mitochondrial;Branched-chain-amino-acid aminotransferase yes no 2 0.00020957 77.64 By matching By MS/MS 1 1 1.1586 1.0879 14.009 2 Median 0.96108 0.98533 NaN 1 0 Median 1.3967 1.2012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1624100 688330 935800 536920 288840 248080 1087200 399490 687710 0 0 0 0 0 0 0 0 0 0 0 0 27853 1543 29315 146679;146680 147644 147644 1 QSLPATSIPTPASFK EGSSTKCAACQNPRKQSLPATSIPTPASFK QSLPATSIPTPASFKFGTSETSKTLKSGFE K Q S F K F 2 0 0 0 0 1 0 0 0 1 1 1 0 1 3 3 2 0 0 0 0 0 15 0 1543.8246 P49792 P49792 1508 1522 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 3.049E-09 99.522 By MS/MS 1 0.6259 0.67157 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6259 0.67157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6839400 4114700 2724800 0 0 0 0 0 0 6839400 4114700 2724800 0 0 0 0 0 0 0 0 0 27854 2401 29316 146681 147645;147646 147646 2 QSLPPGLAVK YTLVITDKEKAEKLKQSLPPGLAVKELK__ AEKLKQSLPPGLAVKELK____________ K Q S V K E 1 0 0 0 0 1 0 1 0 0 2 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 P63173 P63173 58 67 RPL38 60S ribosomal protein L38 yes yes 2 0.00034745 96.027 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 2 2 0.83943 0.74249 8.5368 10 Median 0.78565 0.70698 NaN 1 0 Median 0.84653 0.69232 1.4798 2 0 Median 0.77503 0.7623 6.6773 2 0 Median 0.87313 0.70101 NaN 1 0 Median 0.77212 0.82308 11.159 2 0 Median 0.97174 0.79241 6.2479 2 0 Median 231780000 125990000 105790000 66599000 36296000 30303000 97518000 52300000 45218000 37370000 21350000 16021000 10531000 5522000 5008700 14477000 7761500 6715600 5281800 2757200 2524600 27855 2622 29317 146682;146683;146684;146685;146686;146687;146688;146689;146690;146691 147647;147648;147649;147650;147651;147652;147653;147654;147655;147656;147657;147658;147659;147660;147661;147662;147663;147664;147665;147666;147667;147668;147669;147670;147671;147672;147673;147674;147675;147676;147677;147678;147679 147673 33 QSLQVIESAMER KLKKQLYNIYAKHTKQSLQVIESAMERDRY HTKQSLQVIESAMERDRYMSPMEAQEFGIL K Q S E R D 1 1 0 0 0 2 2 0 0 1 1 0 1 0 0 2 0 0 0 1 0 0 12 0 1389.6922 Q16740;M0R208 Q16740 215 226 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial;ATP-dependent Clp protease proteolytic subunit yes no 2 8.9137E-53 232.88 By MS/MS By MS/MS By matching 2 1 1 0.87398 0.82944 17.095 4 Median 0.87398 0.82944 18.042 2 0 Median 1.1497 0.97518 NaN 1 0 Median 0.74311 0.69971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45533000 23803000 21729000 41242000 21612000 19630000 2322700 1039000 1283700 1968300 1152600 815740 0 0 0 0 0 0 0 0 0 27856 2995 29318;29319 146692;146693;146694;146695 147680;147681;147682;147683 147682 1642 4 QSLTMDPVVK EAMEWMNNKLNLQNKQSLTMDPVVKSKEIE NLQNKQSLTMDPVVKSKEIEAKIKELTSTC K Q S V K S 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 10 0 1116.5849 P34932 P34932 755 764 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.014003 39.305 By MS/MS By MS/MS 1 2 0.96365 0.84227 128.7 3 Median 1.2497 1.2217 NaN 1 0 Median 0.3297 0.3068 142.82 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15631000 10398000 5233200 4610000 2338700 2271300 11021000 8059200 2961900 0 0 0 0 0 0 0 0 0 0 0 0 27857 2230 29320 146696;146697;146698 147684;147685;147686;147687 147684 4 QSMAFSILNTPK QKKAAPASTKQADRRQSMAFSILNTPKKLG DRRQSMAFSILNTPKKLGNSLLRRGASKKA R Q S P K K 1 0 1 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 0 0 0 0 12 0 1335.6857 A0A087WY61;Q14980 Q14980 2046 2057 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.2131E-14 184.71 By matching By MS/MS By MS/MS 1 1 2 0.81632 0.85755 29.771 4 Median NaN NaN NaN 0 0 Median 0.98949 0.86594 NaN 1 0 Median 0.82104 0.90529 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63105 0.64017 39.967 2 0 Median NaN NaN NaN 0 0 Median 26135000 14329000 11806000 0 0 0 1267000 638390 628580 15068000 8323200 6745300 0 0 0 9799400 5367100 4432400 0 0 0 27858 2905;77 29321 146699;146700;146701;146702 147688;147689;147690;147691 147689 4 QSNASSDVEVEEK NNPKVKFSSQQAATKQSNASSDVEVEEKET TKQSNASSDVEVEEKETSVSKEDTDHEEKA K Q S E K E 1 0 1 1 0 1 3 0 0 0 0 1 0 0 0 3 0 0 0 2 0 0 13 0 1420.6318 O75475 O75475 101 113 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.001582 51.436 By MS/MS 2 0.85232 0.85232 15.526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85232 0.85232 15.526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16712000 9432400 7279500 0 0 0 0 0 0 16712000 9432400 7279500 0 0 0 0 0 0 0 0 0 27859 1674 29322 146703;146704 147692;147693 147693 2 QSPHSNLFGVQVQYK CLSQVQRILRERFCRQSPHSNLFGVQVQYK QSPHSNLFGVQVQYKHLSELLKRTALHGES R Q S Y K H 0 0 1 0 0 3 0 1 1 0 1 1 0 1 1 2 0 0 1 2 0 0 15 0 1730.874 O43929;C9JGH7;C9J2X8;Q53SE3 O43929 31 45 ORC4;ORC4L Origin recognition complex subunit 4 yes no 3 0.023807 28.986 By MS/MS 1 1.6016 1.5425 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6016 1.5425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16737000 5854300 10883000 0 0 0 0 0 0 16737000 5854300 10883000 0 0 0 0 0 0 0 0 0 27860 1602 29323 146705 147694 147694 1 QSQHMTEVVR TPPPGTRVRAMAIYKQSQHMTEVVRRCPHH MAIYKQSQHMTEVVRRCPHHERCSDSDGLA K Q S V R R 0 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 1 0 0 2 0 0 10 0 1213.5874 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22;E7EQX7;E9PFT5 A0A0U1RQC9 126 135 TP53 Cellular tumor antigen p53 yes no 3 0.013439 28.177 By matching By MS/MS 1 1 1.2494 1.2338 6.9432 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3373 1.2959 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1673 1.1747 NaN 1 0 Median NaN NaN NaN 0 0 Median 1059500 448660 610860 0 0 0 0 0 0 510360 219010 291350 0 0 0 549150 229640 319510 0 0 0 27861 299 29324 146706;146707 147695 147695 1 QSQIPPVNDFK LKETGSISAPSECFRQSQIPPVNDFKVGMK ECFRQSQIPPVNDFKVGMKLEARDPRNATS R Q S F K V 0 0 1 1 0 2 0 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 11 0 1271.651 Q9UQR0 Q9UQR0 54 64 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.00038183 98.582 By MS/MS 1 0.95261 0.9608 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95261 0.9608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13272000 6657800 6614500 0 0 0 0 0 0 13272000 6657800 6614500 0 0 0 0 0 0 0 0 0 27862 4363 29325 146708 147696 147696 1 QSSATSSFGGLGGGSVR ______________________________ SATSSFGGLGGGSVRFGPGVAFRAPSIHGG R Q S V R F 1 1 0 0 0 1 0 5 0 0 1 0 0 1 0 5 1 0 0 1 0 0 17 0 1553.7434 CON__P08727;P08727;C9JM50 CON__P08727 8 24 KRT19 Keratin, type I cytoskeletal 19 yes no 2 2.9636E-24 178.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 4 3 1.3565 1.2599 15.211 15 Median 1.3988 1.3998 NaN 1 1 Median 1.7923 1.4497 NaN 1 0 Median 1.1548 1.1741 25.757 4 1 Median 1.5162 1.1885 25.94 2 1 Median 1.2627 1.2727 4.445 4 0 Median 1.4366 1.2198 7.2736 3 0 Median 197300000 78520000 118780000 27250000 13201000 14049000 1450800 486100 964700 112550000 39463000 73084000 6599000 3237900 3361100 41252000 18663000 22590000 8198400 3469400 4729100 + 27863 752 29326 146709;146710;146711;146712;146713;146714;146715;146716;146717;146718;146719;146720;146721;146722;146723 147697;147698;147699;147700;147701;147702;147703;147704;147705;147706;147707;147708;147709;147710;147711 147697 15 QSSFALLGDLTK TLMYQCMQDKMPEVRQSSFALLGDLTKACF EVRQSSFALLGDLTKACFQHVKPCIADFMP R Q S T K A 1 0 0 1 0 1 0 1 0 0 3 1 0 1 0 2 1 0 0 0 0 0 12 0 1278.682 Q92973 Q92973 693 704 TNPO1 Transportin-1 no no 2 0.00014122 88.596 By matching By MS/MS 1 1 1.1852 1.0777 9.2007 2 Median 1.2177 1.1501 NaN 1 0 Median 1.1536 1.0098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33738000 15354000 18384000 4682500 2138900 2543600 29055000 13215000 15840000 0 0 0 0 0 0 0 0 0 0 0 0 27864 3570 29327 146724;146725 147712;147713 147713 2 QSSGPGASSGTSGDHGELVVR RFYEQMNGPVAGASRQSSGPGASSGTSGDH ASSGTSGDHGELVVRIASLEVENQSLRGVV R Q S V R I 1 1 0 1 0 1 1 5 1 0 1 0 0 0 1 5 1 0 0 2 0 0 21 0 1983.9246 E9PL71;E9PN91 E9PL71 39 59 EEF1D yes no 3 5.776E-18 105.06 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.74959 0.67282 34.285 4 Median 0.70828 0.68389 NaN 1 0 Median 0.59385 0.50376 NaN 1 0 Median 1.1594 1.1454 NaN 1 0 Median 0.79332 0.66193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23290000 12693000 10597000 2360000 1477300 882630 947840 519910 427930 3405500 1606100 1799400 16577000 9089700 7486800 0 0 0 0 0 0 27865 957 29328 146726;146727;146728;146729 147714;147715;147716;147717;147718;147719 147719 6 QSSSEISLAVER PAPEDEDEAWRQRRKQSSSEISLAVERARR RRKQSSSEISLAVERARRRREEEERRMQEE K Q S E R A 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 4 0 0 0 1 0 0 12 0 1304.6572 P48634 P48634 455 466 PRRC2A Protein PRRC2A yes yes 2 0.044545 26.118 By MS/MS By matching 2 1 0.97566 0.91567 20.323 3 Median 0.97566 0.91567 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4557 1.302 NaN 1 0 Median NaN NaN NaN 0 0 Median 33372000 15728000 17644000 32974000 15524000 17449000 0 0 0 0 0 0 0 0 0 398580 203680 194900 0 0 0 27866 2363 29329 146730;146731;146732 147720 147720 1 QSSSSRDDNMFQIGK KQKTGETSRALSSSKQSSSSRDDNMFQIGK QSSSSRDDNMFQIGKMRYVSVRDFKGKVLI K Q S G K M 0 1 1 2 0 2 0 1 0 1 0 1 1 1 0 4 0 0 0 0 0 0 15 1 1698.7631 P53999 P53999 54 68 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 1.1138E-08 101.95 By MS/MS 1 0.88651 0.87651 NaN 1 Median 0.88651 0.87651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8242600 4032600 4210000 8242600 4032600 4210000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27867 2478 29330 146733 147721 147721 1 QSSYSQQPYNNQGQQQNMESSGSQGGR QSGYSQSYGGYENQKQSSYSQQPYNNQGQQ GQQQNMESSGSQGGRAPSYDQPDYGQQDSY K Q S G R A 0 1 3 0 0 8 1 4 0 0 0 0 1 0 1 6 0 0 2 0 0 0 27 0 2974.2496 Q92804;A0A075B7F2 Q92804 75 101 TAF15 TATA-binding protein-associated factor 2N yes no 3 2.2474E-13 53.475 By MS/MS 1 1.0602 1.1071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0602 1.1071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5432800 3002500 2430400 0 0 0 0 0 0 5432800 3002500 2430400 0 0 0 0 0 0 0 0 0 27868 3559 29331 146734 147722;147723 147722 2 QSTGSAPQGPAYHGVNR MWQGRNDMTYNYANRQSTGSAPQGPAYHGV TGSAPQGPAYHGVNRTDEMLHTDQRANHEG R Q S N R T 2 1 1 0 0 2 0 3 1 0 0 0 0 0 2 2 1 0 1 1 0 0 17 0 1725.8183 O14497;H0Y488;A0A1B0GTU5 O14497 1512 1528 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.065163 16.88 By MS/MS 1 0.70694 0.78476 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70694 0.78476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1677200 902040 775170 0 0 0 0 0 0 1677200 902040 775170 0 0 0 0 0 0 0 0 0 27869 1480 29332 146735 147724 147724 1 QSTSFLVLQEILESEEKGDPNKPSGFR YKMLQEKQELNEPPKQSTSFLVLQEILESE ESEEKGDPNKPSGFRSVKAPVTKVAASIGN K Q S F R S 0 1 1 1 0 2 4 2 0 1 3 2 0 2 2 4 1 0 0 1 0 0 27 2 3034.5247 O00151 O00151 212 238 PDLIM1 PDZ and LIM domain protein 1 yes yes 4 2.7092E-05 33.075 By matching By MS/MS 1 1 0.67837 0.76314 23.914 2 Median 0.60865 0.64441 NaN 1 0 Median 0.75606 0.90373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5074200 2763600 2310600 479120 321650 157470 4595100 2441900 2153100 0 0 0 0 0 0 0 0 0 0 0 0 27870 1442 29333 146736;146737 147725;147726 147726 2 QSTVLAPVIDLK VKKAALTQAKSQRTKQSTVLAPVIDLKRGG RTKQSTVLAPVIDLKRGGSSDDRQIVDTPP K Q S L K R 1 0 0 1 0 1 0 0 0 1 2 1 0 0 1 1 1 0 0 2 0 0 12 0 1282.7497 Q96I25;Q5W010;Q5W011;Q5W012 Q96I25 47 58 RBM17 Splicing factor 45 yes no 2 0.022187 31.843 By MS/MS By matching By matching 1 1 1 0.89392 0.86064 8.767 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87233 0.86064 NaN 1 0 Median 1.1252 1.0014 NaN 1 0 Median 0.89392 0.86005 NaN 1 0 Median NaN NaN NaN 0 0 Median 6061200 3136800 2924400 0 0 0 0 0 0 4625100 2404000 2221100 105600 49288 56314 1330600 683520 647040 0 0 0 27871 3674 29334 146738;146739;146740 147727 147727 1 QSVEADINGLR ADDFRLKYENEVALRQSVEADINGLRRVLD VALRQSVEADINGLRRVLDELTLTKADLEM R Q S L R R 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1200.6099 P13645;CON__P13645;K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9;CON__P02535-1;CON__P08730-1 P13645 246 256 KRT10;KRT13 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13 no no 2 8.9752E-19 158.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 8 3 9 2 1 0.24407 0.25931 84.027 26 Median 0.94839 0.89476 52.846 3 2 Median 0.21522 0.1802 97.017 8 6 Median 0.2615 0.26694 88.192 3 3 Median 0.18866 0.19305 71.671 9 7 Median 0.34063 0.35514 3.7393 2 2 Median 0.15994 0.12467 NaN 1 1 Median 154130000 115680000 38445000 17832000 11054000 6777700 45493000 36038000 9455800 25672000 17890000 7781900 36487000 29728000 6758800 15725000 10006000 5719900 12917000 10966000 1951200 + 27872 756;740;736;753 29335 146741;146742;146743;146744;146745;146746;146747;146748;146749;146750;146751;146752;146753;146754;146755;146756;146757;146758;146759;146760;146761;146762;146763;146764;146765;146766;146767 147728;147729;147730;147731;147732;147733;147734;147735;147736;147737;147738;147739;147740;147741;147742;147743;147744;147745;147746;147747;147748;147749;147750 147737 23 QSVEADINGLRR ADDFRLKYENEVALRQSVEADINGLRRVLD ALRQSVEADINGLRRVLDELTLTKADLEMQ R Q S R R V 1 2 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1356.711 P13645;CON__P13645;K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9;CON__P02535-1;CON__P08730-1 P13645 246 257 KRT10;KRT13 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13 no no 2;3 2.3697E-195 285.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 9 10 14 11 3 0.07934 0.083466 105 61 Median 0.077526 0.086133 98.857 15 14 Median 0.09527 0.092476 113.72 9 8 Median 0.12102 0.12548 146.97 9 9 Median 0.072138 0.064958 106.77 14 14 Median 0.057274 0.06215 58.119 11 11 Median 0.10181 0.092034 57.967 3 3 Median 930660000 846970000 83682000 381800000 346120000 35677000 136140000 124950000 11194000 158280000 137860000 20420000 71448000 65924000 5524700 175530000 165250000 10286000 7461700 6880300 581390 + 27873 756;740;736;753 29336 146768;146769;146770;146771;146772;146773;146774;146775;146776;146777;146778;146779;146780;146781;146782;146783;146784;146785;146786;146787;146788;146789;146790;146791;146792;146793;146794;146795;146796;146797;146798;146799;146800;146801;146802;146803;146804;146805;146806;146807;146808;146809;146810;146811;146812;146813;146814;146815;146816;146817;146818;146819;146820;146821;146822;146823;146824;146825;146826;146827;146828;146829 147751;147752;147753;147754;147755;147756;147757;147758;147759;147760;147761;147762;147763;147764;147765;147766;147767;147768;147769;147770;147771;147772;147773;147774;147775;147776;147777;147778;147779;147780;147781;147782;147783;147784;147785;147786;147787;147788;147789;147790;147791;147792;147793;147794;147795;147796;147797;147798;147799;147800;147801;147802;147803;147804;147805;147806;147807;147808;147809;147810;147811;147812;147813 147771 63 QSVENDIHGLR ADDFRVKYETELAMRQSVENDIHGLRKVID LAMRQSVENDIHGLRKVIDDTNITRLQLET R Q S L R K 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1266.6317 P05783;F8VZY9 P05783 176 186 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 9.5071E-06 129.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 3 3 4 1.191 1.1202 40.166 20 Median 2.1021 2.0185 82.327 2 0 Median 1.6186 1.3714 15.379 4 0 Median 1.1522 1.1202 31.3 4 0 Median 1.1455 0.98415 9.5626 3 0 Median 1.4218 1.416 67.057 3 0 Plateau 1.1776 1.0211 5.7325 4 1 Median 253840000 111530000 142310000 20261000 7220800 13040000 23769000 8975800 14793000 114580000 52602000 61974000 47163000 21628000 25535000 25523000 10208000 15315000 22543000 10892000 11651000 27874 1869 29337 146830;146831;146832;146833;146834;146835;146836;146837;146838;146839;146840;146841;146842;146843;146844;146845;146846;146847;146848;146849;146850 147814;147815;147816;147817;147818;147819;147820;147821;147822;147823;147824;147825;147826;147827;147828;147829;147830;147831;147832;147833;147834;147835;147836;147837;147838;147839;147840;147841;147842;147843 147817 29 QSVENDIHGLRK ADDFRVKYETELAMRQSVENDIHGLRKVID AMRQSVENDIHGLRKVIDDTNITRLQLETE R Q S R K V 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1394.7266 P05783;F8VZY9 P05783 176 187 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 7.4872E-06 137.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 4 4 1.2025 1.2149 14.456 20 Median 1.1027 1.0995 9.2538 2 0 Median 1.3465 1.2278 16.658 3 0 Median 1.205 1.2271 6.4653 3 0 Median 1.1745 1.1318 4.4006 4 0 Median 1.3445 1.391 8.5578 4 0 Median 1.1511 1.0329 16.577 4 0 Median 306360000 132400000 173950000 30185000 13648000 16537000 34058000 13340000 20719000 81817000 35127000 46690000 42312000 19498000 22814000 84188000 33858000 50330000 33795000 16933000 16862000 27875 1869 29338 146851;146852;146853;146854;146855;146856;146857;146858;146859;146860;146861;146862;146863;146864;146865;146866;146867;146868;146869;146870 147844;147845;147846;147847;147848;147849;147850;147851;147852;147853;147854;147855;147856;147857;147858;147859;147860;147861;147862;147863;147864;147865;147866;147867;147868;147869;147870 147856 27 QSVFPFESGKPFK VCNTKLDNNWGREERQSVFPFESGKPFKIQ ERQSVFPFESGKPFKIQVLVEPDHFKVAVN R Q S F K I 0 0 0 0 0 1 1 1 0 0 0 2 0 3 2 2 0 0 0 1 0 0 13 1 1496.7664 P17931;G3V3R6 P17931 187 199 LGALS3 Galectin-3;Galectin yes no 3 0.0057081 32.068 By MS/MS By matching 2 1 1.6854 1.5784 48.845 3 Median 1.3391 1.2806 29.563 2 0 Median NaN NaN NaN 0 0 Median 2.7326 2.751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7620600 2679200 4941400 5179100 2342100 2837000 0 0 0 2441400 337030 2104400 0 0 0 0 0 0 0 0 0 27876 2049 29339 146871;146872;146873 147871;147872 147872 2 QTAAQLILK IAFPSIGSGRNGFPKQTAAQLILKAISSYF RNGFPKQTAAQLILKAISSYFVSTMSSSIK K Q T L K A 2 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 984.59678 O75367;B4DJC3 O75367 324 332 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.0016236 79.469 By MS/MS By matching 7 4 1.2044 1.1608 15.027 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0747 1.0803 19.025 7 0 Median 1.4784 1.2084 3.3051 4 0 Median 131290000 60767000 70524000 0 0 0 0 0 0 0 0 0 0 0 0 107480000 51337000 56138000 23816000 9429500 14387000 27877 1662 29340 146874;146875;146876;146877;146878;146879;146880;146881;146882;146883;146884 147873;147874;147875;147876;147877;147878 147876 6 QTAAQVTLK VAFPPFPSGRNCFPKQTAAQVTLKAISAHF RNCFPKQTAAQVTLKAISAHFDDSSASSLK K Q T L K A 2 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 9 0 958.54475 Q9P0M6 Q9P0M6 324 332 H2AFY2 Core histone macro-H2A.2 yes yes 2 0.012656 46.158 By matching By MS/MS By matching 1 2 1 1.054 1.0781 18.511 4 Median 0.83974 0.8531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.054 1.0781 2.1831 2 0 Median 1.5895 1.3409 NaN 1 0 Median 4928900 2167200 2761800 1102500 485710 616840 0 0 0 0 0 0 0 0 0 2555200 1223200 1332000 1271200 458300 812890 27878 4206 29341 146885;146886;146887;146888 147879 147879 1 QTADFLQEYVTNK FHKEHFKYVGTKLPKQTADFLQEYVTNKTK PKQTADFLQEYVTNKTKKTEELRKTVEDLD K Q T N K T 1 0 1 1 0 2 1 0 0 0 1 1 0 1 0 0 2 0 1 1 0 0 13 0 1555.7518 Q9ULX6 Q9ULX6 427 439 AKAP8L A-kinase anchor protein 8-like yes yes 2 0.0042583 41.283 By MS/MS By matching 1 1 0.92305 0.92398 8.9976 2 Median 1.0379 0.98467 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82092 0.86702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6144500 3512000 2632500 4359400 2290400 2069000 0 0 0 1785100 1221600 563440 0 0 0 0 0 0 0 0 0 27879 4331 29342 146889;146890 147880;147881 147881 2 QTAEESGITNSASSTLLSEYNVTNNSVALR LQEVVKVGQASEIARQTAEESGITNSASST LLSEYNVTNNSVALRTPRTPASQDRILQEA R Q T L R T 3 1 4 0 0 1 3 1 0 1 3 0 0 0 0 6 4 0 1 2 0 0 30 0 3155.5218 Q99459 Q99459 322 351 CDC5L Cell division cycle 5-like protein yes yes 3 7.5957E-06 36.483 By MS/MS By matching 2 1 0.8631 0.92093 22.509 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81516 0.85668 10.227 2 0 Median NaN NaN NaN 0 0 Median 1.1608 1.2392 NaN 1 0 Median NaN NaN NaN 0 0 Median 7569400 3735500 3833900 0 0 0 0 0 0 6158300 3155000 3003300 0 0 0 1411200 580480 830690 0 0 0 27880 3745 29343 146891;146892;146893 147882;147883 147882 2 QTAEETGLTPLETSR IISPPWDFREFEVEKQTAEETGLTPLETSR QTAEETGLTPLETSRKTPDSRPSLEETFEI K Q T S R K 1 1 0 0 0 1 3 1 0 0 2 0 0 0 1 1 4 0 0 0 0 0 15 0 1631.8002 Q13042;Q5T8C6 Q13042 573 587 CDC16 Cell division cycle protein 16 homolog yes no 2 3.7332E-08 149.23 By MS/MS By MS/MS 1 1 0.75796 0.69817 6.1911 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65919 0.66826 NaN 1 0 Median 0.87152 0.72941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18616000 10554000 8061300 0 0 0 0 0 0 17716000 10135000 7581100 899510 419240 480270 0 0 0 0 0 0 27881 2779 29344 146894;146895 147884;147885;147886 147885 3 QTALVELLK ADICTLPDTEKQIKKQTALVELLKHKPKAT EKQIKKQTALVELLKHKPKATEEQLKTVME K Q T L K H 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1013.6121 CON__P02769 CON__P02769 549 557 yes yes 2 0.012642 60.91 By MS/MS By MS/MS 4 2 0.030345 0.029971 157.06 4 Median 0.068205 0.063439 183.25 3 3 Median NaN NaN NaN 0 0 Median 0.0135 0.01416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89204000 88056000 1148000 76954000 75879000 1075100 0 0 0 12250000 12177000 72877 0 0 0 0 0 0 0 0 0 + 27882 746 29345 146896;146897;146898;146899;146900;146901 147887;147888;147889;147890;147891;147892 147887 6 QTASVTLQAIAAQNAAVQAVNAHSNILK VKIESLAKSLEDALRQTASVTLQAIAAQNA NAAVQAVNAHSNILKAAMDNSEIAGEKKSA R Q T L K A 8 0 3 0 0 4 0 0 1 2 2 1 0 0 0 2 2 0 0 3 0 0 28 0 2831.5254 Q16891;B9A067;C9J406;H7C463 Q16891 230 257 IMMT MICOS complex subunit MIC60 yes no 3 0.013033 16.27 By MS/MS By MS/MS 1 1 1.1617 1.0419 21.544 2 Median 0.97757 0.89469 NaN 1 0 Median 1.3805 1.2134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11546000 5310800 6235200 8345500 4016100 4329400 3200500 1294700 1905800 0 0 0 0 0 0 0 0 0 0 0 0 27883 3001 29346 146902;146903 147893;147894;147895 147893 3 QTATQLLK KVPPAINQFTQALDRQTATQLLKLAHKYRP FTQALDRQTATQLLKLAHKYRPETKQEKKQ R Q T L K L 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 8 0 901.52328 P62424;Q5T8U3 P62424 90 97 RPL7A 60S ribosomal protein L7a yes no 2 0.0022926 110.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 1.1978 1.1197 18.818 9 Median 1.1223 1.027 NaN 1 0 Median 1.1697 0.98423 1.7729 2 0 Median NaN NaN NaN 0 0 Median 1.2667 1.0628 7.3782 2 0 Median 1.1996 1.2052 5.7298 2 0 Median 1.842 1.5454 15.053 2 0 Median 43126000 19576000 23551000 15430000 7226100 8204400 8076900 3817600 4259300 0 0 0 4011400 1753800 2257600 13508000 6099900 7407800 2099900 678250 1421700 27884 2589 29347 146904;146905;146906;146907;146908;146909;146910;146911;146912 147896;147897;147898;147899;147900;147901;147902;147903 147899 8 QTDVGITHFR MGHVLIPQSDLRWSKQTDVGITHFRSGMSH LRWSKQTDVGITHFRSGMSHEEDQLIPNLY K Q T F R S 0 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1172.5938 Q6P2Q9 Q6P2Q9 1345 1354 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0095158 58.699 By MS/MS 1 1.3478 1.1205 NaN 1 Median NaN NaN NaN 0 0 Median 1.3478 1.1205 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1433500 557360 876160 0 0 0 1433500 557360 876160 0 0 0 0 0 0 0 0 0 0 0 0 27885 3157 29348 146913 147904 147904 1 QTDVLQQLSIQMANAK SFEWLSQMRFYFDPKQTDVLQQLSIQMANA TDVLQQLSIQMANAKFNYGFEYLGVQDKLV K Q T A K F 2 0 1 1 0 4 0 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 16 0 1786.9247 Q14204 Q14204 1850 1865 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 1.0222E-09 101.39 By MS/MS By matching By MS/MS By matching 2 3 2 1 1.0242 1.0018 18.739 8 Median 1.005 1.0018 1.7009 2 0 Median 1.2341 1.077 13.93 3 0 Plateau 1.0575 1.1543 5.3157 2 0 Median NaN NaN NaN 0 0 Median 0.64703 0.66886 NaN 1 0 Median NaN NaN NaN 0 0 Median 25458000 12249000 13209000 12945000 6232600 6712700 7088300 3476400 3611900 4926400 2277000 2649400 0 0 0 497910 263060 234840 0 0 0 27886 2865 29349 146914;146915;146916;146917;146918;146919;146920;146921 147905;147906;147907;147908;147909 147905 5 QTEDSLASER EELHKVIAEKDKQIKQTEDSLASERDRLTS DKQIKQTEDSLASERDRLTSKEEELKDIQN K Q T E R D 1 1 0 1 0 1 2 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 10 0 1134.5153 Q86UP2 Q86UP2 618 627 KTN1 Kinectin yes yes 2 0.0020473 61.65 By MS/MS 1 0.95752 0.82245 NaN 1 Median NaN NaN NaN 0 0 Median 0.95752 0.82245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1845300 954380 890970 0 0 0 1845300 954380 890970 0 0 0 0 0 0 0 0 0 0 0 0 27887 3280 29350 146922 147910 147910 1 QTEEQVNDLKER PSNKEDVDDLVSQLRQTEEQVNDLKERLKT QLRQTEEQVNDLKERLKTSTSNVEQYQAMV R Q T E R L 0 1 1 1 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1487.7216 P12270 P12270 943 954 TPR Nucleoprotein TPR yes yes 3 0.0042916 35.737 By MS/MS By matching 1 1 0.85536 0.90274 20.785 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87443 1.0457 NaN 1 0 Median 0.83669 0.77935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4024800 2012600 2012300 0 0 0 0 0 0 3689400 1813900 1875400 335470 198620 136840 0 0 0 0 0 0 27888 1978 29351 146923;146924 147911;147912 147912 2 QTELFAHFIQPAAQK KMQTDRANRFEYLLKQTELFAHFIQPAAQK QTELFAHFIQPAAQKTPTSPLKMKPGRPRI K Q T Q K T 3 0 0 0 0 3 1 0 1 1 1 1 0 2 1 0 1 0 0 0 0 0 15 0 1727.8995 O60264 O60264 98 112 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00037926 50.194 By MS/MS By matching 1 1 0.68823 0.72591 17.452 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75835 0.82125 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62458 0.64164 NaN 1 0 Median NaN NaN NaN 0 0 Median 6619300 3720400 2899000 0 0 0 0 0 0 5237900 2848100 2389800 0 0 0 1381400 872230 509200 0 0 0 27889 1608 29352 146925;146926 147913;147914 147914 2 QTESLESLLSK HVEDGVLSMQVASARQTESLESLLSKSQEH ASARQTESLESLLSKSQEHEQRLAALQGRL R Q T S K S 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 3 1 0 0 0 0 0 11 0 1233.6452 Q07065 Q07065 430 440 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00060949 66.19 By MS/MS By matching By matching By matching 1 1 1 1 1.3321 1.1933 21.935 4 Median 1.0912 1.0273 NaN 1 0 Median 1.6261 1.3863 NaN 1 0 Median 0.82299 0.9286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.674 1.4477 NaN 1 0 Median 16161000 7118200 9042900 10509000 4796200 5713000 4293900 1664400 2629500 1215500 623020 592490 0 0 0 0 0 0 142560 34527 108030 27890 2730 29353 146927;146928;146929;146930 147915;147916 147916 2 QTESTSFLEK AGYYCGFKATAAGVKQTESTSFLEKKVKKK AAGVKQTESTSFLEKKVKKKFDWTFEQTVE K Q T E K K 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 2 2 0 0 0 0 0 10 0 1168.5612 G3V5Z7;P60900;G3V295 G3V5Z7 178 187 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 0.012084 57.267 By MS/MS 2 0.90108 0.84053 1.5222 2 Median 0.90108 0.84053 1.5222 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21302000 10105000 11196000 21302000 10105000 11196000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27891 1122 29354 146931;146932 147917;147918 147918 2 QTETEMLYGSAPR EKERAKQERQLKNKKQTETEMLYGSAPRTP KKQTETEMLYGSAPRTPSKRRGLAPNTPGK K Q T P R T 1 1 0 0 0 1 2 1 0 0 1 0 1 0 1 1 2 0 1 0 0 0 13 0 1481.682 O43663;H0YL53;G3V3N7 O43663 457 469 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.00027007 78.908 By MS/MS 2 0.91364 0.97794 3.6328 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91364 0.97794 3.6328 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9415800 4712200 4703600 0 0 0 0 0 0 9415800 4712200 4703600 0 0 0 0 0 0 0 0 0 27892 1581 29355 146933;146934 147919;147920 147919 2 QTEVLLQPNPNAR SKAECTKIWTEKIMKQTEVLLQPNPNARIE MKQTEVLLQPNPNARIEEFVYEKLDRKAPS K Q T A R I 1 1 2 0 0 2 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 13 0 1478.7841 A0A087WW40;Q9Y371 A0A087WW40 62 74 SH3GLB1 Endophilin-B1 yes no 2 9.2157E-05 129.85 By MS/MS 1 0.51428 0.51259 NaN 1 Median 0.51428 0.51259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3256500 1998400 1258100 3256500 1998400 1258100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27893 52 29356 146935 147921 147921 1 QTFEAAILTQLHPR PHGDRKSCEMGLQLRQTFEAAILTQLHPRS RQTFEAAILTQLHPRSQIDIYVQVLQADGG R Q T P R S 2 1 0 0 0 2 1 0 1 1 2 0 0 1 1 0 2 0 0 0 0 0 14 0 1623.8733 Q9NPD3;E9PI41 Q9NPD3 105 118 EXOSC4 Exosome complex component RRP41 yes no 3 0.0032963 32.734 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.99573 0.95078 18.405 4 Median 0.81811 0.77199 NaN 1 0 Median 1.3734 1.174 NaN 1 0 Median 0.93613 0.87513 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0591 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median 7356100 3708400 3647700 4500000 2383400 2116700 525890 199950 325940 1189800 566140 623690 0 0 0 1140300 558900 581410 0 0 0 27894 4046 29357 146936;146937;146938;146939 147922;147923 147922 2 QTFLLQTTK YTTSANRAKLLAKNRQTFLLQTTKLTRLAR LLAKNRQTFLLQTTKLTRLARRMCRDLLQP R Q T T K L 0 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 3 0 0 0 0 0 9 0 1078.6023 O94776 O94776 452 460 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0032081 66.692 By MS/MS 1 1.1248 1.1289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1248 1.1289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17458000 7934200 9523600 0 0 0 0 0 0 17458000 7934200 9523600 0 0 0 0 0 0 0 0 0 27895 1723 29358 146940 147924;147925 147924 2 QTFSPFGQIMEIR YCGGIASGLTDQLMRQTFSPFGQIMEIRVF MRQTFSPFGQIMEIRVFPEKGYSFVRFSTH R Q T I R V 0 1 0 0 0 2 1 1 0 2 0 0 1 2 1 1 1 0 0 0 0 0 13 0 1552.7708 Q01085;C9JTN7;F8W8I6;P31483;F8WE16 Q01085 223 235 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 2 0.00045482 73.067 By MS/MS By MS/MS By matching By MS/MS 2 4 3 1 0.94672 0.94945 35.245 10 Median 0.51322 0.52614 65.118 2 0 Median NaN NaN NaN 0 0 Median 0.92068 1.1184 17.6 4 1 Linear 1.0753 0.9739 11.252 3 0 Median 0.97186 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median 48612000 25235000 23377000 6721400 4143700 2577700 0 0 0 36218000 18454000 17763000 1505200 619490 885740 4167900 2017600 2150300 0 0 0 27896 2682;724;1086 29359;29360 146941;146942;146943;146944;146945;146946;146947;146948;146949;146950 147926;147927;147928;147929;147930;147931;147932;147933 147932 255 8 QTGEGVGPQEYTLLK IYSPKDGQPCMDHDRQTGEGVGPQEYTLLK QTGEGVGPQEYTLLKLKVLEPYPSKLSGLK R Q T L K L 0 0 0 0 0 2 2 3 0 0 2 1 0 0 1 0 2 0 1 1 0 0 15 0 1618.8203 Q9P2J5 Q9P2J5 254 268 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0049041 35.594 By MS/MS By matching By matching By matching 1 1 1 1 0.90679 0.83844 26.575 4 Median 0.78047 0.76262 NaN 1 0 Median 1.0524 0.9218 NaN 1 0 Median 1.1455 1.2189 NaN 1 0 Median 0.78132 0.65855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9413000 4914600 4498500 4674400 2693000 1981400 2427700 1147400 1280300 1683000 665570 1017500 627830 408590 219240 0 0 0 0 0 0 27897 4224 29361 146951;146952;146953;146954 147934;147935 147934 2 QTGIVLNRPVLR GNREELVERLQSYTRQTGIVLNRPVLRGED YTRQTGIVLNRPVLRGEDGDKAAPPPMSAQ R Q T L R G 0 2 1 0 0 1 0 1 0 1 2 0 0 0 1 0 1 0 0 2 0 0 12 1 1364.8252 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3 Q13435 60 71 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 9.6289E-09 172.59 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 5 1 0.76443 0.82477 14.089 11 Median 0.74017 0.82235 NaN 1 0 Median 1.1356 1.0948 NaN 1 0 Median 0.69788 0.84877 10.955 2 1 Median 0.84247 0.82477 NaN 1 0 Median 0.79742 0.86641 4.8282 5 1 Median 0.67346 0.60881 NaN 1 0 Median 151280000 82543000 68734000 5355000 3027000 2328100 7628100 3700800 3927200 84812000 47009000 37803000 2077700 1056100 1021600 49555000 26688000 22868000 1848700 1062100 786560 27898 2817 29362 146955;146956;146957;146958;146959;146960;146961;146962;146963;146964;146965 147936;147937;147938;147939;147940;147941;147942;147943;147944;147945 147942 10 QTIAHQQQQLTNLQMAAQR KKYAMEQSIKSVLVKQTIAHQQQQLTNLQM HQQQQLTNLQMAAQRQRALAIMCRVYVGSI K Q T Q R Q 3 1 1 0 0 7 0 0 1 1 2 0 1 0 0 0 2 0 0 0 0 0 19 0 2207.1229 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YVR6;E9PQ56;E9PN18;E9PMU7 A0A0J9YVP6 78 96 PUF60 yes no 3 1.4252E-71 229.16 By MS/MS By MS/MS 2 3 0.98048 0.96033 34.606 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93749 0.92673 5.0367 2 0 Median 1.258 1.0545 48.43 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111390000 56775000 54618000 0 0 0 0 0 0 97911000 49646000 48265000 13482000 7128600 6353100 0 0 0 0 0 0 27899 284 29363;29364 146966;146967;146968;146969;146970 147946;147947;147948;147949;147950;147951 147949 139 6 QTIDNSQGAYQEAFDISK YFRYLAEVACGDDRKQTIDNSQGAYQEAFD DNSQGAYQEAFDISKKEMQPTHPIRLGLAL K Q T S K K 2 0 1 2 0 3 1 1 0 2 0 1 0 1 0 2 1 0 1 0 0 0 18 0 2013.928 P27348 P27348 140 157 YWHAQ 14-3-3 protein theta yes yes 2 4.049E-11 103.85 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2159 1.0453 4.5518 4 Median 1.1315 1.0458 NaN 1 0 Median 1.2367 1.0448 NaN 1 0 Median 1.1954 1.1231 NaN 1 0 Median 1.2399 1.0074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52048000 22143000 29905000 40892000 17360000 23533000 2911500 1258100 1653400 8038500 3431400 4607100 206350 94253 112100 0 0 0 0 0 0 27900 2152 29365 146971;146972;146973;146974 147952;147953;147954;147955;147956 147953 5 QTIDNSQGAYQEAFDISKK YFRYLAEVACGDDRKQTIDNSQGAYQEAFD NSQGAYQEAFDISKKEMQPTHPIRLGLALN K Q T K K E 2 0 1 2 0 3 1 1 0 2 0 2 0 1 0 2 1 0 1 0 0 0 19 1 2142.0229 P27348 P27348 140 158 YWHAQ 14-3-3 protein theta yes yes 2;3 1.4267E-72 240.59 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1 1.2359 1.1528 18.246 9 Median 1.164 1.1803 6.1553 3 0 Median 1.1251 1.0296 12.903 2 0 Median 1.1127 1.1097 34.369 2 0 Median 1.2361 1.1119 NaN 1 0 Median 1.4625 1.553 NaN 1 0 Median NaN NaN NaN 0 0 Median 387720000 183560000 204160000 346030000 164740000 181290000 11204000 4967900 6236100 26463000 11947000 14516000 1073400 456580 616800 2943800 1440800 1503100 0 0 0 27901 2152 29366 146975;146976;146977;146978;146979;146980;146981;146982;146983 147957;147958;147959;147960;147961;147962;147963;147964;147965;147966 147960 10 QTIGNSCGTIGLIHAVANNQDK ELKGQEVSPKVYFMKQTIGNSCGTIGLIHA GTIGLIHAVANNQDKLGFEDGSVLKQFLSE K Q T D K L 2 0 3 1 1 2 0 3 1 3 1 1 0 0 0 1 2 0 0 1 0 0 22 0 2310.1386 P09936;D6RE83;D6R956;D6R974 P09936 84 105 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1;Ubiquitin carboxyl-terminal hydrolase yes no 3 2.5805E-09 53.033 By MS/MS By matching 1 1 1.2004 1.0622 8.1315 2 Median 1.2079 1.1251 NaN 1 0 Median 1.193 1.0029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20427000 9171700 11255000 15466000 6938200 8527700 4960900 2233500 2727400 0 0 0 0 0 0 0 0 0 0 0 0 27902 1923 29367 146984;146985 147967 147967 1 QTIQYIHPADAVK FNKAVIRVNVFREHRQTIQYIHPADAVKLG HRQTIQYIHPADAVKLGQAELVVIDEAAAI R Q T V K L 2 0 0 1 0 2 0 0 1 2 0 1 0 0 1 0 1 0 1 1 0 0 13 0 1482.7831 Q9H0A0;A0A087WV29 Q9H0A0 366 378 NAT10 N-acetyltransferase 10 yes no 3 0.0010118 43.184 By matching By MS/MS By matching 1 2 1 0.95901 0.91505 13.683 4 Median NaN NaN NaN 0 0 Median 1.315 1.1515 NaN 1 0 Median 0.79716 0.86249 2.0812 2 0 Median 1.1224 0.95664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24189000 13177000 11012000 0 0 0 2449900 1307700 1142200 19375000 11008000 8367100 2364000 861620 1502400 0 0 0 0 0 0 27903 3921 29368 146986;146987;146988;146989 147968;147969;147970;147971 147968 4 QTKPEFDQVLQGTAASTK FSTVLTVFPILRHLKQTKPEFDQVLQGTAA PEFDQVLQGTAASTKNKLPGLITSMETIGA K Q T T K N 2 0 0 1 0 3 1 1 0 0 1 2 0 1 1 1 3 0 0 1 0 0 18 1 1947.9902 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07 A0A0A0MSB8 413 430 EXOC7 Exocyst complex component 7 yes no 3 4.7785E-05 46.131 By matching By MS/MS 1 1 1.1179 1.2027 12.855 2 Median 1.2755 1.3172 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9797 1.0982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10163000 4529500 5633800 3121500 1237100 1884300 0 0 0 7041800 3292300 3749500 0 0 0 0 0 0 0 0 0 27904 179 29369 146990;146991 147972 147972 1 QTKVEGELEEMER ELQAKDEELLKVKEKQTKVEGELEEMERKH EKQTKVEGELEEMERKHQQLLEEKNILAEQ K Q T E R K 0 1 0 0 0 1 5 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 13 1 1576.7403 P35580 P35580 868 880 MYH10 Myosin-10 yes yes 3 0.036011 19.839 By MS/MS 1 1.3517 1.3639 NaN 1 Median 1.3517 1.3639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5348200 2573700 2774600 5348200 2573700 2774600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27905 2245 29370 146992 147973 147973 1 QTLELAR NPEISHMLNNPDIMRQTLELARNPAMMQEM LNNPDIMRQTLELARNPAMMQEMMRNQDRA R Q T A R N 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 829.46577 Q9UMX0 Q9UMX0 237 243 UBQLN1 Ubiquilin-1 yes yes 2 0.031276 49.358 By matching By MS/MS 1 1 1.3812 1.2945 2.8932 2 Median 1.3022 1.3213 NaN 1 0 Median 1.4649 1.2683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3610800 1396200 2214600 1437300 557790 879530 2173500 838460 1335000 0 0 0 0 0 0 0 0 0 0 0 0 27906 4335 29371 146993;146994 147974;147975 147974 2 QTLENERGELANEVK LEQTKRVKANLEKAKQTLENERGELANEVK QTLENERGELANEVKVLLQGKGDSEHKRKK K Q T V K V 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 15 1 1728.8642 P35579 P35579 1220 1234 MYH9 Myosin-9 yes yes 2;3 1.4796E-71 249.04 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.0619 1.1856 32.845 8 Median 1.3078 1.3051 1.0184 2 0 Median 1.0607 0.98313 1.9707 2 0 Median 1.055 1.2645 0 2 0 Median 1.1515 1.1117 NaN 1 0 Median 0.45345 0.49054 NaN 1 0 Median NaN NaN NaN 0 0 Median 211820000 94360000 117460000 76264000 32021000 44243000 102400000 47501000 54898000 27724000 11897000 15826000 1620300 799790 820550 3812000 2140900 1671100 0 0 0 27907 2244 29372 146995;146996;146997;146998;146999;147000;147001;147002 147976;147977;147978;147979;147980;147981;147982;147983;147984 147979 9 QTLMWSATWPK EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ RPDRQTLMWSATWPKEVRQLAEDFLKDYIH R Q T P K E 1 0 0 0 0 1 0 0 0 0 1 1 1 0 1 1 2 2 0 0 0 0 11 0 1347.6645 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 274 284 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00019093 101.65 By MS/MS By matching By MS/MS By MS/MS 1 1 3 1 0.90108 0.90783 21.359 6 Median 1.1744 1.1523 NaN 1 0 Median 1.3112 1.1387 NaN 1 0 Median 0.89555 0.87841 17.955 3 0 Plateau NaN NaN NaN 0 0 Median 0.90665 0.93756 NaN 1 0 Median NaN NaN NaN 0 0 Median 99830000 51519000 48311000 2306300 1233300 1073000 1089600 463960 625670 92589000 47779000 44810000 0 0 0 3844900 2042900 1802000 0 0 0 27908 1334;343 29373;29374 147003;147004;147005;147006;147007;147008 147985;147986;147987;147988;147989;147990;147991;147992;147993 147989 166 9 QTLQEDLLR RLNLVEAFVEDAELRQTLQEDLLRRFPDLN EDAELRQTLQEDLLRRFPDLNRLAKKFQRQ R Q T L R R 0 1 0 1 0 2 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1114.5982 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 374 382 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.00031109 112.84 By MS/MS 2 0.8843 0.9385 0.6898 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8843 0.9385 0.6898 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23947000 12239000 11708000 0 0 0 0 0 0 23947000 12239000 11708000 0 0 0 0 0 0 0 0 0 27909 2324 29375 147009;147010 147994;147995 147995 2 QTMLFSATQTR EEELKQIIKLLPTRRQTMLFSATQTRKVED PTRRQTMLFSATQTRKVEDLARISLKKEPL R Q T T R K 1 1 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 11 0 1282.634 Q9NVP1;H7C452 Q9NVP1 359 369 DDX18 ATP-dependent RNA helicase DDX18 yes no 2 0.00013831 98.254 By MS/MS By MS/MS By matching 1 2 1 1.3196 1.3432 88.756 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4439 1.4616 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.335 1.3527 12.932 2 0 Median 0.28369 0.23706 NaN 1 0 Median 35294000 15789000 19505000 0 0 0 0 0 0 20692000 8482300 12210000 0 0 0 14152000 6946700 7205500 449570 359940 89635 27910 4137 29376 147011;147012;147013;147014 147996;147997;147998;147999;148000 147996 5 QTNLENLDQAFSVAER HRHKPLLIDMNKVYRQTNLENLDQAFSVAE TNLENLDQAFSVAERDLGVTRLLDPEDVDV R Q T E R D 2 1 2 1 0 2 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1833.8857 Q15149;H0YDN1;E9PMV1 Q15149 350 365 PLEC Plectin yes no 2 1.6987E-36 214.81 By MS/MS By MS/MS By MS/MS 1 1 1 1.3249 1.3818 7.8738 3 Median 1.264 1.2324 NaN 1 0 Median 1.6215 1.3818 NaN 1 0 Median 1.3249 1.4332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20731000 8518200 12213000 15361000 6210300 9150300 1103200 457780 645430 4267100 1850100 2417000 0 0 0 0 0 0 0 0 0 27911 2933 29377 147015;147016;147017 148001;148002;148003;148004 148002 4 QTNNQNWGSQPIAQQPLQGGDHSGNYGYK KRKADGYNQPDSKRRQTNNQNWGSQPIAQQ QPLQGGDHSGNYGYKSENQEFYQDTFGQQW R Q T Y K S 1 0 4 1 0 6 0 5 1 1 1 1 0 0 2 2 1 1 2 0 0 0 29 0 3186.4504 O60506 O60506 579 607 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 3 4.0905E-21 70.983 By MS/MS By matching By matching 1 1 2 0.7642 0.73467 14.626 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69977 0.69881 NaN 1 0 Median 0.89834 0.77237 NaN 1 0 Median 0.69066 0.69834 23.79 2 0 Median NaN NaN NaN 0 0 Median 31199000 17296000 13903000 0 0 0 0 0 0 22900000 12757000 10143000 804400 399190 405210 7495300 4140100 3355100 0 0 0 27912 1619 29378 147018;147019;147020;147021 148005;148006 148006 2 QTNQLQYLLR NPPPPETSNPNKPKRQTNQLQYLLRVVLKT NKPKRQTNQLQYLLRVVLKTLWKHQFAWPF R Q T L R V 0 1 1 0 0 3 0 0 0 0 3 0 0 0 0 0 1 0 1 0 0 0 10 0 1275.6935 O60885;M0QZD9;M0R0H4;M0QYW0 O60885 59 68 BRD4 Bromodomain-containing protein 4 yes no 2 0.00049449 73.931 By MS/MS 2 0.85854 0.93447 26.96 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85854 0.93447 26.96 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5834400 2771700 3062700 0 0 0 0 0 0 5834400 2771700 3062700 0 0 0 0 0 0 0 0 0 27913 1638 29379 147022;147023 148007;148008 148007 2 QTPHSEIIFYK FEEKDFVDKAEKSLKQTPHSEIIFYKNGVN KSLKQTPHSEIIFYKNGVNQGVAYKDIFEG K Q T Y K N 0 0 0 0 0 1 1 0 1 2 0 1 0 1 1 1 1 0 1 0 0 0 11 0 1361.698 F5H8F7;Q9UBL3;H0YBF6 F5H8F7 396 406 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 3 0.050823 15.202 By MS/MS 1 0.75393 0.77594 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75393 0.77594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7900300 3871100 4029200 0 0 0 0 0 0 7900300 3871100 4029200 0 0 0 0 0 0 0 0 0 27914 1048 29380 147024 148009 148009 1 QTPSDFLK ______________________________ ______________________________ K Q T L K Q 0 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 8 0 934.476 P62312 P62312 6 13 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.010485 58.782 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 0.88842 0.85694 16.388 6 Median 0.94505 0.84677 1.2283 2 0 Median 1.145 0.93357 NaN 1 0 Median 0.84588 0.85974 NaN 1 0 Median 0.79553 0.59395 NaN 1 0 Median 0.85314 0.90174 NaN 1 0 Median NaN NaN NaN 0 0 Median 65726000 33208000 32519000 24490000 12266000 12224000 13716000 6208500 7507400 17651000 9531800 8118700 3925000 2011600 1913400 5945200 3189700 2755500 0 0 0 27915 2584 29381 147025;147026;147027;147028;147029;147030 148010 148010 1 QTPVLPPTITDQIR IIHFLRTRAHPVMLKQTPVLPPTITDQIRL KQTPVLPPTITDQIRLWELERDRLRFTEGV K Q T I R L 0 1 0 1 0 2 0 0 0 2 1 0 0 0 3 0 3 0 0 1 0 0 14 0 1577.8777 Q92759 Q92759 379 392 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.00035014 72.652 By MS/MS 1 0.72351 0.72621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72351 0.72621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3874300 2182000 1692200 0 0 0 0 0 0 3874300 2182000 1692200 0 0 0 0 0 0 0 0 0 27916 3553 29382 147031 148011 148011 1 QTQIFTTYSDNQPGVLIQVYEGER VMTALIKRNSTIPTKQTQIFTTYSDNQPGV DNQPGVLIQVYEGERAMTKDNNLLGRFELS K Q T E R A 0 1 1 1 0 4 2 2 0 2 1 0 0 1 1 1 3 0 2 2 0 0 24 0 2785.3559 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;Q53FA3;P34931 A0A0G2JIW1 425 448 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2;3 4.0858E-12 61.097 By MS/MS By MS/MS By matching 2 2 2 1.1598 1.137 16.447 6 Median 1.1535 1.137 2.32 2 0 Median 1.1207 0.98182 17.195 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2553 1.3005 16.153 2 0 Median NaN NaN NaN 0 0 Median 12559000 5641700 6917300 8882200 4178800 4703400 2061100 882610 1178500 0 0 0 0 0 0 1615700 580340 1035300 0 0 0 27917 278;2229 29383 147032;147033;147034;147035;147036;147037 148012;148013;148014;148015;148016;148017;148018 148015 7 QTQTFTTYSDNQPGVLIQVYEGER VMTVLIKRNTTIPTKQTQTFTTYSDNQPGV DNQPGVLIQVYEGERAMTKDNNLLGKFELT K Q T E R A 0 1 1 1 0 4 2 2 0 1 1 0 0 1 1 1 4 0 2 2 0 0 24 0 2773.3195 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65 P11142 424 447 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 1.9417E-18 85.16 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 0.93649 0.91606 8.9861 7 Median 0.94107 0.89782 3.5225 3 0 Median 0.84559 0.7403 NaN 1 0 Median 0.86156 0.91606 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92032 0.94801 4.1819 2 0 Median NaN NaN NaN 0 0 Median 36697000 18417000 18280000 29430000 14555000 14875000 727830 385940 341900 1997600 1153500 844150 0 0 0 4541900 2322200 2219700 0 0 0 27918 1950 29384 147038;147039;147040;147041;147042;147043;147044 148019;148020;148021;148022;148023;148024;148025;148026;148027;148028;148029;148030;148031;148032;148033;148034 148028 16 QTSDGNWLMVHR KDLFGKSDPYLEFHKQTSDGNWLMVHRTEV FHKQTSDGNWLMVHRTEVVKNNLNPVWRPF K Q T H R T 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 1 1 0 1 0 0 12 0 1442.6725 O75131;A0A087WYQ3 O75131 168 179 CPNE3 Copine-3 yes no 3 0.0072582 29.807 By MS/MS By matching By matching 3 1 1 1.1906 1.1437 25.276 5 Median 1.2525 1.2357 33.071 3 0 Plateau 1.3311 1.1283 NaN 1 0 Median 1.1906 1.2563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16511000 7591700 8919000 10060000 4910000 5150100 5109300 2021800 3087600 1341300 659960 681310 0 0 0 0 0 0 0 0 0 27919 1645 29385 147045;147046;147047;147048;147049 148035 148035 1 QTSEGANSTTDSIQEPVVLFHSR KEEDSDFISGRIYGKQTSEGANSTTDSIQE TTDSIQEPVVLFHSRFMELTRMQQKEKEKD K Q T S R F 1 1 1 1 0 2 2 1 1 1 1 0 0 1 1 4 3 0 0 2 0 0 23 0 2502.1987 Q96T58 Q96T58 1564 1586 SPEN Msx2-interacting protein yes yes 3 0.006609 25.213 By MS/MS 1 0.93414 0.99219 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93414 0.99219 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7213900 3383200 3830700 0 0 0 0 0 0 7213900 3383200 3830700 0 0 0 0 0 0 0 0 0 27920 3741 29386 147050 148036 148036 1 QTTITSHFAK PEPSPSPRITRKSTRQTTITSHFAKGPAKR RKSTRQTTITSHFAKGPAKRKPQEESERAK R Q T A K G 1 0 0 0 0 1 0 0 1 1 0 1 0 1 0 1 3 0 0 0 0 0 10 0 1132.5877 P26358;K7EJL0;K7ENQ6;K7ERQ1;K7ELB1 P26358 164 173 DNMT1 DNA (cytosine-5)-methyltransferase 1 no no 2 0.010217 44.203 By MS/MS By matching 1 1 1.1015 1.1226 1.6641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99533 1.1094 NaN 1 0 Median 1.219 1.1359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3242700 1292400 1950400 0 0 0 0 0 0 2586500 1010000 1576500 656200 282370 373840 0 0 0 0 0 0 27921 2142;1375 29387 147051;147052 148037 148037 1 QTTLAFKPIKK LEKKQKREPGTKTKKQTTLAFKPIKKGKKR KTKKQTTLAFKPIKKGKKRNPWSDSESDRS K Q T K K G 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1277 1287 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.043542 19.659 By MS/MS By matching By matching By matching 1 1 1 1 0.93044 1.0306 12.92 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87746 1.0166 NaN 1 0 Median 1.3004 1.318 NaN 1 0 Median 0.89255 1.0448 NaN 1 0 Median 0.96994 1.0003 NaN 1 0 Median 4546200 2252100 2294100 0 0 0 0 0 0 1783300 970290 813060 465260 232690 232570 1950500 886820 1063700 347020 162250 184770 27922 1963 29388 147053;147054;147055;147056 148038;148039 148039 2 QTTSNLGHLNKPSIQALIHGLNR RLINANMMVLGHEPRQTTSNLGHLNKPSIQ LNKPSIQALIHGLNRHYYSITINYRKNELE R Q T N R H 1 1 3 0 0 2 0 2 2 2 4 1 0 0 1 2 2 0 0 0 0 0 23 1 2511.367 O00487 O00487 176 198 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 3 0.017302 15.506 By MS/MS 1 0.8293 0.83047 NaN 1 Median 0.8293 0.83047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8071700 4544300 3527400 8071700 4544300 3527400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27923 1468 29389 147057 148040 148040 1 QTTVSNSQQAYQEAFEISK DYFRYLSEVASGDNKQTTVSNSQQAYQEAF SNSQQAYQEAFEISKKEMQPTHPIRLGLAL K Q T S K K 2 0 1 0 0 4 2 0 0 1 0 1 0 1 0 3 2 0 1 1 0 0 19 0 2158.0178 P31946 P31946 141 159 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2;3 4.8497E-14 107.65 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 1 1 1.0754 0.98742 13.366 10 Median 1.0748 0.99121 9.4823 3 0 Median 1.1266 0.95433 5.7784 2 0 Median 1.0591 0.99289 12.682 3 2 Plateau 1.1282 0.93165 NaN 1 0 Median 1.2629 1.2906 NaN 1 0 Median NaN NaN NaN 0 0 Median 158440000 73849000 84596000 122040000 56566000 65476000 5160600 2285700 2874900 27687000 13309000 14378000 1037900 488020 549890 2517000 1199800 1317200 0 0 0 27924 2210 29390 147058;147059;147060;147061;147062;147063;147064;147065;147066;147067 148041;148042;148043;148044;148045;148046;148047;148048;148049;148050 148045 10 QTTVSNSQQAYQEAFEISKK DYFRYLSEVASGDNKQTTVSNSQQAYQEAF NSQQAYQEAFEISKKEMQPTHPIRLGLALN K Q T K K E 2 0 1 0 0 4 2 0 0 1 0 2 0 1 0 3 2 0 1 1 0 0 20 1 2286.1128 P31946 P31946 141 160 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2;3 8.4378E-19 123.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1 1.1419 1.2421 42.284 9 Median 1.1419 1.1543 30.755 3 1 Plateau 0.88243 0.80664 78.27 2 1 Median 1.2455 1.3131 7.8543 2 0 Median 1.4433 1.2992 NaN 1 0 Median 1.6632 1.7798 NaN 1 0 Median NaN NaN NaN 0 0 Median 502390000 232930000 269460000 415790000 191980000 223820000 29212000 18144000 11068000 44033000 17344000 26690000 2227000 658510 1568400 11126000 4805300 6321100 0 0 0 27925 2210 29391 147068;147069;147070;147071;147072;147073;147074;147075;147076 148051;148052;148053;148054;148055;148056;148057;148058;148059;148060;148061 148056 11 QTVAVGVIK SDYPPLGRFAVRDMRQTVAVGVIKAVDKKA AVRDMRQTVAVGVIKAVDKKAAGAGKVTKS R Q T I K A 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 3 0 0 9 0 913.55967 P68104;Q5VTE0;A0A087WVQ9;A0A2U3TZH3;Q05639 P68104 431 439 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2 no no 1;2 2.3736E-37 195.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 9 7 9 2 6 1.144 1.0177 21.655 45 Median 1.2172 1.1362 10.625 12 0 Median 1.1022 0.93853 8.1835 9 0 Median 1.245 1.2368 4.9827 7 0 Median 1.0341 0.90788 11.451 9 0 Median 1.8637 1.87 27.886 2 0 Median 1.0555 0.89467 10.752 6 0 Median 1412100000 660660000 751400000 174290000 78348000 95942000 387590000 188580000 199010000 301190000 134180000 167010000 488430000 232700000 255730000 14379000 5241900 9136700 46181000 21612000 24570000 27926 2632;404 29392 147077;147078;147079;147080;147081;147082;147083;147084;147085;147086;147087;147088;147089;147090;147091;147092;147093;147094;147095;147096;147097;147098;147099;147100;147101;147102;147103;147104;147105;147106;147107;147108;147109;147110;147111;147112;147113;147114;147115;147116;147117;147118;147119;147120;147121 148062;148063;148064;148065;148066;148067;148068;148069;148070;148071;148072;148073;148074;148075;148076;148077;148078;148079;148080;148081;148082;148083;148084;148085;148086;148087;148088;148089;148090;148091;148092;148093;148094;148095;148096;148097;148098;148099;148100;148101;148102;148103;148104;148105;148106;148107 148064 44 QTVAVGVIKAVDKK SDYPPLGRFAVRDMRQTVAVGVIKAVDKKA RQTVAVGVIKAVDKKAAGAGKVTKSAQKAQ R Q T K K A 2 0 0 1 0 1 0 1 0 1 0 3 0 0 0 0 1 0 0 4 0 0 14 2 1454.8821 P68104;Q5VTE0;A0A087WVQ9 P68104 431 444 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 3 0.0021449 36.597 By matching By MS/MS 1 1 1.0188 1.0818 14.269 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0202 1.1966 NaN 1 0 Median 1.0174 0.97795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9281800 4257900 5023900 0 0 0 0 0 0 3267000 1591600 1675400 6014800 2666300 3348500 0 0 0 0 0 0 27927 2632 29393 147122;147123 148108;148109 148109 2 QTVAVGVIKNVEKK SQYPPLGRFAVRDMRQTVAVGVIKNVEKKS RQTVAVGVIKNVEKKSGGAGKALGQRLDAR R Q T K K S 1 0 1 0 0 1 1 1 0 1 0 3 0 0 0 0 1 0 0 4 0 0 14 2 1511.9035 A0A2U3TZH3;Q05639 A0A2U3TZH3 431 444 EEF1A2 Elongation factor 1-alpha 2 yes no 3 0.0065525 27.335 By matching By MS/MS By matching 1 1 1 1.078 1.0362 20.825 3 Median NaN NaN NaN 0 0 Median 1.0395 0.98401 NaN 1 0 Median 1.2314 1.4443 NaN 1 0 Median 1.078 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12027000 5570800 6456200 0 0 0 2888400 1403100 1485300 4244200 2033200 2210900 4894400 2134400 2760000 0 0 0 0 0 0 27928 404 29394 147124;147125;147126 148110;148111 148111 2 QTVEADVNGLRR ADDFRTKYEHELALRQTVEADVNGLRRVLD ALRQTVEADVNGLRRVLDELTLARTDLEMQ R Q T R R V 1 2 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 2 0 0 12 1 1356.711 CON__P08779;P08779 CON__P08779 214 225 KRT16 Keratin, type I cytoskeletal 16 yes no 2 3.2073E-08 128.86 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6791200 6791200 0 0 0 0 0 0 0 6791200 6791200 0 0 0 0 0 0 0 0 0 0 + 27929 754 29395 147127 148112 148112 1 QTVLESIR DIIREQIRLKAAEHRQTVLESIRTAGTLFG LKAAEHRQTVLESIRTAGTLFGEGFRAFVT R Q T I R T 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 8 0 944.5291 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 206 213 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.0034375 96.253 By MS/MS By MS/MS 1 1 1.4345 1.303 12.503 2 Median 1.2512 1.1927 NaN 1 0 Median 1.6448 1.4234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16543000 6813600 9728900 10168000 4444000 5724000 6374600 2369700 4004900 0 0 0 0 0 0 0 0 0 0 0 0 27930 1140;4133;3098 29396 147128;147129 148113;148114;148115;148116 148113 4 QTVMFSATFPR EPQVMRIVDNVRPDRQTVMFSATFPRAMEA RPDRQTVMFSATFPRAMEALARRILSKPIE R Q T P R A 1 1 0 0 0 1 0 0 0 0 0 0 1 2 1 1 2 0 0 1 0 0 11 0 1283.6332 Q7L014;A0A0C4DG89 Q7L014 555 565 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00013831 87.298 By matching By MS/MS 1 2 1.0035 1.1033 29.726 3 Plateau 0.62709 0.62387 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93593 1.0292 9.8367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23982000 12130000 11852000 1690300 956620 733660 0 0 0 22292000 11174000 11118000 0 0 0 0 0 0 0 0 0 27931 3216 29397;29398 147130;147131;147132 148117;148118;148119;148120 148119 1687 4 QTVMFTATMPPAVER EKMLANFESGKHKYRQTVMFTATMPPAVER QTVMFTATMPPAVERLARSYLRRPAVVYIG R Q T E R L 2 1 0 0 0 1 1 0 0 0 0 0 2 1 2 0 3 0 0 2 0 0 15 0 1677.8218 Q9BUQ8 Q9BUQ8 601 615 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 1.0862E-07 99.522 By MS/MS 1 0.68891 0.74027 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68891 0.74027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3046100 1666300 1379800 0 0 0 0 0 0 3046100 1666300 1379800 0 0 0 0 0 0 0 0 0 27932 3842 29399 147133 148121 148121 1 QTVSWAVTPK PEKEQETYCICGNGRQTVSWAVTPKSLGNV CGNGRQTVSWAVTPKSLGNVNFTVSAEAVE R Q T P K S 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 2 1 0 2 0 0 10 0 1115.5975 CON__ENSEMBL:ENSBTAP00000024146;P01023 CON__ENSEMBL:ENSBTAP00000024146 858 867 A2M Alpha-2-macroglobulin yes no 2 0.020497 52.579 By MS/MS 1 0.21136 0.18126 NaN 1 Median NaN NaN NaN 0 0 Median 0.21136 0.18126 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6119500 5194600 924850 0 0 0 6119500 5194600 924850 0 0 0 0 0 0 0 0 0 0 0 0 + 27933 734 29400 147134 148122 148122 1 QTYFLPVIGLVDAEK SQRKGKCAVIKTSTRQTYFLPVIGLVDAEK QTYFLPVIGLVDAEKLKPGDLVGVNKDSYL R Q T E K L 1 0 0 1 0 1 1 1 0 1 2 1 0 1 1 0 1 0 1 2 0 0 15 0 1691.9134 R4GNH3;P17980;E9PM69;E9PKD5;E9PMD8;E9PLG2 R4GNH3 114 128 PSMC3 26S protease regulatory subunit 6A yes no 2 2.2557E-06 92.856 By MS/MS 2 1.1 0.94205 14.959 2 Median NaN NaN NaN 0 0 Median 1.1 0.94205 14.959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10576000 5064900 5510900 0 0 0 10576000 5064900 5510900 0 0 0 0 0 0 0 0 0 0 0 0 27934 2050 29401 147135;147136 148123;148124 148124 2 QTYSTEPNNLK MVVRNCSSFLIKRNKQTYSTEPNNLKARNS KRNKQTYSTEPNNLKARNSFRYNGLIHRKT K Q T L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 1 2 0 1 0 0 0 11 0 1293.6201 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 23 33 RPL28 60S ribosomal protein L28 yes no 2 0.0044917 47.869 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 3 1 2 1.0191 0.97668 10.413 10 Median 0.96442 0.89052 10.326 2 0 Median 1.1209 0.94835 14.13 2 0 Median 0.986 0.92402 6.2045 3 0 Median 1.2312 1.0233 NaN 1 0 Median 1.0462 1.094 8.516 2 0 Median NaN NaN NaN 0 0 Median 724130000 321730000 402400000 326720000 145870000 180850000 197880000 83880000 114000000 96459000 45313000 51145000 71137000 30981000 40156000 31928000 15681000 16247000 0 0 0 27935 1191 29402 147137;147138;147139;147140;147141;147142;147143;147144;147145;147146 148125;148126;148127;148128 148125 4 QVAEAYEVLSDAK DKNPENKEEAERKFKQVAEAYEVLSDAKKR FKQVAEAYEVLSDAKKRDIYDKYGKEGLNG K Q V A K K 3 0 0 1 0 1 2 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 13 0 1421.7038 C9J2C4;A0A0J9YX62;O75190;C9JB42;C9JDR7;C9JDX6;F8WCZ4;C9J2P2;E9PH18;Q8WWF6 C9J2C4 48 60 DNAJB6;DNAJB3 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3 yes no 3 0.07616 9.0501 By MS/MS By matching 2 2 1.1031 0.99993 13.326 4 Median 0.99122 0.95168 0 2 0 Median 1.3596 1.1517 12.993 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14292000 6831400 7460800 9275200 4639100 4636100 5017000 2192400 2824600 0 0 0 0 0 0 0 0 0 0 0 0 27936 291 29403 147147;147148;147149;147150 148129 148129 1 QVAEQFLNMR RMALIGLGVSHPVLKQVAEQFLNMRGGLGL HPVLKQVAEQFLNMRGGLGLSGAKANYRGG K Q V M R G 1 1 1 0 0 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 10 0 1234.6128 P22695;H3BRG4;H3BSJ9 P22695 232 241 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.00075826 84.476 By MS/MS By MS/MS 1 1 1.1071 1.1032 NaN 1 Median 1.1071 1.1032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10829000 4790300 6038900 10829000 4790300 6038900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27937 2105 29404 147151;147152 148130;148131 148131 2 QVATALQNLQTK RQGKGDSPEARALAKQVATALQNLQTKTNR LAKQVATALQNLQTKTNRAVANSRPAKAAV K Q V T K T 2 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1313.7303 P18206 P18206 465 476 VCL Vinculin yes yes 2 8.1559E-05 92.866 By MS/MS By MS/MS 1 1 0.86291 0.77881 4.9286 2 Median 0.77644 0.75213 NaN 1 0 Median 0.95901 0.80643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42201000 21171000 21030000 9773800 5051800 4722000 32428000 16119000 16308000 0 0 0 0 0 0 0 0 0 0 0 0 27938 2057 29405 147153;147154 148132;148133;148134;148135 148133 4 QVAYIYK QENVSNLVIEDTELKQVAYIYKCVNTTLQI VIEDTELKQVAYIYKCVNTTLQIKGKINSI K Q V Y K C 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 2 1 0 0 7 0 883.48035 Q01518 Q01518 349 355 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.044246 43 By matching By MS/MS 1 1 1.2093 1.0953 12.478 2 Median 1.2403 1.1963 NaN 1 0 Median 1.1791 1.0028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8003700 3491100 4512500 2298300 883460 1414900 5705300 2607700 3097700 0 0 0 0 0 0 0 0 0 0 0 0 27939 2686 29406 147155;147156 148136;148137 148137 2 QVDDLEVWSHTNDTIGSVR GKHLSFVVRFPNQGRQVDDLEVWSHTNDTI LEVWSHTNDTIGSVRRCILNRIKANVAHTK R Q V V R R 0 1 1 3 0 1 1 1 1 1 1 0 0 0 0 2 2 1 0 3 0 0 19 0 2170.0291 Q93008 Q93008 898 916 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 2.9153E-08 75.239 By MS/MS By matching 2 2 1.152 1.0606 21.673 4 Median 1.0166 0.99082 11.016 2 0 Median 1.5011 1.2648 26.302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15919000 7051600 8867000 11565000 5490000 6075400 4353100 1561600 2791600 0 0 0 0 0 0 0 0 0 0 0 0 27940 3573 29407 147157;147158;147159;147160 148138;148139 148138 2 QVDFLNWEVTDHNLHELR ______________________________ FLNWEVTDHNLHELRVLRRYRLQRREDYTR K Q V L R V 0 1 2 2 0 1 2 0 2 0 3 0 0 1 0 0 1 1 0 2 0 0 18 0 2264.0974 Q9NV31 Q9NV31 15 32 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 4 0.00049556 34.721 By MS/MS 1 1.1836 1.2525 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1836 1.2525 NaN 1 0 Median NaN NaN NaN 0 0 Median 7322000 3326200 3995800 0 0 0 0 0 0 0 0 0 0 0 0 7322000 3326200 3995800 0 0 0 27941 4122 29408 147161 148140;148141 148141 2 QVDLIDLVR AAAQLLESSVQNLFKQVDLIDLVRWKILKD VQNLFKQVDLIDLVRWKILKDKHIPQFLQE K Q V V R W 0 1 0 2 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1069.6132 Q9UKN8 Q9UKN8 536 544 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.019275 40.002 By matching By MS/MS By MS/MS 1 2 1 0.89899 0.92863 28.718 4 Median 0.93512 0.933 NaN 1 0 Median 0.91373 0.79275 47.153 2 0 Median 0.86425 0.92428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5823500 2682400 3141200 687010 326950 360060 2834000 1200900 1633100 2302500 1154500 1148000 0 0 0 0 0 0 0 0 0 27942 4314 29409 147162;147163;147164;147165 148142;148143;148144 148142 3 QVDQLTNDK RLGDLYEEEMRELRRQVDQLTNDKARVEVE MRELRRQVDQLTNDKARVEVERDNLAEDIM R Q V D K A 0 0 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1059.5197 P08670;B0YJC4 P08670 160 168 VIM Vimentin yes no 2 0.010888 63.419 By MS/MS 1 0.78323 0.74866 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78323 0.74866 NaN 1 1 Median NaN NaN NaN 0 0 Median 2646100 1425800 1220400 0 0 0 0 0 0 0 0 0 0 0 0 2646100 1425800 1220400 0 0 0 27943 1907 29410 147166 148145 148145 1 QVDQLTNDKAR RLGDLYEEEMRELRRQVDQLTNDKARVEVE ELRRQVDQLTNDKARVEVERDNLAEDIMRL R Q V A R V 1 1 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1286.6579 P08670;B0YJC4 P08670 160 170 VIM Vimentin yes no 3 0.00073517 54.259 By matching By MS/MS By MS/MS 1 1 1 1.0331 0.98068 12.524 3 Plateau 0.96301 0.98068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0954 1.1379 NaN 1 0 Median 0.97444 0.88719 NaN 1 0 Median 4786400 2451700 2334600 755500 396640 358870 0 0 0 0 0 0 0 0 0 2321600 1112700 1208900 1709300 942390 766860 27944 1907 29411 147167;147168;147169 148146;148147;148148;148149;148150;148151 148148 6 QVDTQALVAQR Q V Q R 2 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1227.6571 REV__Q15149 yes no 2 0.0091599 39.148 By matching By MS/MS 1 2 1.1891 0.98916 1.8583 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91408 0.95783 NaN 1 0 Median 1.1891 0.98916 0 2 0 Median 9199900 4463600 4736300 0 0 0 0 0 0 0 0 0 0 0 0 4361700 2106500 2255200 4838200 2357100 2481100 + 27945 4540 29412 147170;147171;147172 148152 148152 1 QVEDDIQQLLK LLKTYGQSTYSRQIKQVEDDIQQLLKKINE RQIKQVEDDIQQLLKKINELTGIKESDTGL K Q V L K K 0 0 0 2 0 3 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1327.6983 P35998;C9JLS9 P35998 47 57 PSMC2 26S protease regulatory subunit 7 yes no 2 0.001056 83.005 By MS/MS 1 1.0853 0.91916 NaN 1 Median NaN NaN NaN 0 0 Median 1.0853 0.91916 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15327000 8099200 7227400 0 0 0 15327000 8099200 7227400 0 0 0 0 0 0 0 0 0 0 0 0 27946 2253 29413 147173 148153 148153 1 QVEDEKNSFR QEENRQKLSLSTKLKQVEDEKNSFREQLEE STKLKQVEDEKNSFREQLEEEEEAKHNLEK K Q V F R E 0 1 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 10 1 1250.5891 P35579 P35579 1333 1342 MYH9 Myosin-9 yes yes 3 0.0039887 41.283 By matching By MS/MS 1 1 1.2518 1.2393 10.91 2 Median 1.3054 1.3387 NaN 1 0 Median 1.2004 1.1473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1697500 814820 882720 138700 63282 75418 1558800 751530 807300 0 0 0 0 0 0 0 0 0 0 0 0 27947 2244 29414 147174;147175 148154;148155 148155 2 QVEEALHQLHAR HNIICLQNDHKAVMKQVEEALHQLHARDKE VMKQVEEALHQLHARDKEKQARDMAEAHKE K Q V A R D 2 1 0 0 0 2 2 0 2 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1429.7426 F5H5V4;F5GX23;J3KN29;O00233;F5H169 F5H5V4 92 103 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 3 0.00033562 55.401 By MS/MS By MS/MS By matching 2 1 1 1.2161 1.0902 26.061 4 Median 1.0645 1.0209 5.63 2 0 Median 1.3192 1.1187 NaN 1 0 Median 1.8536 1.7526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15574000 7241000 8333500 10788000 5381000 5407000 2405200 1030700 1374500 2381400 829320 1552100 0 0 0 0 0 0 0 0 0 27948 1003 29415 147176;147177;147178;147179 148156;148157;148158 148158 3 QVEEEILALK ERQKGLVEDTLRQRRQVEEEILALKASFEK LRQRRQVEEEILALKASFEKAAAGKAELEL R Q V L K A 1 0 0 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1170.6496 Q15149 Q15149 2059 2068 PLEC Plectin yes yes 2 0.00038325 79.906 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0872 1.1282 19.908 6 Median 1.2044 1.208 2.5074 2 2 Median 1.1206 0.97446 38.22 2 0 Median 0.999 1.0724 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95004 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 48468000 23855000 24613000 34161000 17233000 16928000 6375200 2595900 3779400 6492500 3289500 3203000 0 0 0 1438900 736240 702670 0 0 0 27949 2933 29416 147180;147181;147182;147183;147184;147185 148159;148160;148161;148162;148163 148161 5 QVEEIFNLK PVKEDWNVRITKLRKQVEEIFNLKFAQALG ITKLRKQVEEIFNLKFAQALGLTEAVKVPY K Q V L K F 0 0 1 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1118.5972 P78347;A0A494C1K3;A0A494C0Q7 P78347 574 582 GTF2I General transcription factor II-I yes no 2 0.0050508 58.815 By MS/MS By matching 1 2 0.89341 0.76993 17.086 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67112 0.72004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0128 0.87537 18.151 2 0 Median 7945000 3453300 4491800 0 0 0 0 0 0 7547700 3256900 4290800 0 0 0 0 0 0 397370 196390 200970 27950 2642 29417 147186;147187;147188 148164 148164 1 QVEELFER FNFEKWNARITDLRKQVEELFERKYAQAIK RITDLRKQVEELFERKYAQAIKAKGPVTIP K Q V E R K 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 1048.5189 P78347;A0A494C1K3 P78347 364 371 GTF2I General transcription factor II-I yes no 2 0.0024695 121.99 By matching By matching By MS/MS By matching By matching By matching 1 2 3 2 1 2 0.86124 0.86653 33.114 11 Median 0.82 0.8041 NaN 1 0 Median 0.82741 0.77842 15.165 2 0 Median 0.72429 0.791 38.71 3 0 Median 1.233 1.0498 7.1712 2 0 Median 1.0442 1.0936 NaN 1 0 Median 0.7307 0.60657 56.738 2 0 Median 43481000 23956000 19525000 2538500 1359800 1178700 2316600 1247300 1069300 25725000 14830000 10895000 2882600 1290400 1592200 6045300 3063400 2981900 3972800 2165200 1807600 27951 2642 29418 147189;147190;147191;147192;147193;147194;147195;147196;147197;147198;147199 148165;148166 148165 2 QVEHPLLSGLLYPGLQALDEEYLK VTQHDSKKAGAEVVKQVEHPLLSGLLYPGL LLYPGLQALDEEYLKVDAQFGGIDQRKIFT K Q V L K V 1 0 0 1 0 2 3 2 1 0 7 1 0 0 2 1 0 0 2 1 0 0 24 0 2724.4374 P54577;A0A0C4DGZ5 P54577 155 178 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 1.4212E-08 49.106 By matching By MS/MS 1 2 0.82357 0.69677 9.6821 3 Plateau 0.73675 0.7455 NaN 1 0 Median 0.76457 0.65509 8.7225 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9131700 5091200 4040500 1910700 1243800 666970 7221000 3847400 3373600 0 0 0 0 0 0 0 0 0 0 0 0 27952 2482 29419 147200;147201;147202 148167;148168 148167 2 QVELALWDTAGQEDYDR TVFENYVADIEVDGKQVELALWDTAGQEDY ELALWDTAGQEDYDRLRPLSYPDTDVILMC K Q V D R L 2 1 0 3 0 2 2 1 0 0 2 0 0 0 0 0 1 1 1 1 0 0 17 0 2007.9174 P61586;Q5JR08;P08134;Q5JR07;C9JNR4;E9PQH6;C9JX21;Q5JR05;Q5JR06;E9PN11;U3KQA9;U3KQV3;P62745 P61586 52 68 RHOA;RHOC;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB yes no 2 2.301E-07 93.959 By MS/MS By matching By matching 1 1 1 1.2986 1.091 29.433 3 Median 1.045 0.98624 NaN 1 0 Median 1.2986 1.091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7045 1.714 NaN 1 0 Median NaN NaN NaN 0 0 Median 5988600 2551600 3436900 5003400 2185500 2817900 369500 145460 224040 0 0 0 0 0 0 615660 220670 394990 0 0 0 27953 2559 29420 147203;147204;147205 148169;148170 148169 2 QVENAGAIGPSR PVSRRTELSIDISSKQVENAGAIGPSRFGL SSKQVENAGAIGPSRFGLKRAEVLGHKTPE K Q V S R F 2 1 1 0 0 1 1 2 0 1 0 0 0 0 1 1 0 0 0 1 0 0 12 0 1197.6102 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 118 129 SEPT9 Septin-9 yes no 2 0.00018773 85.958 By MS/MS 1 0.83225 0.84891 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83225 0.84891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9826100 5099000 4727200 0 0 0 0 0 0 9826100 5099000 4727200 0 0 0 0 0 0 0 0 0 27954 4276 29421 147206 148171;148172 148171 2 QVEPLDPPAGSAPGEHVFVK SQGMLLCASIEGINRQVEPLDPPAGSAPGE DPPAGSAPGEHVFVKGYEKGQPDEELKPKK R Q V V K G 2 0 0 1 0 1 2 2 1 0 1 1 0 1 4 1 0 0 0 3 0 0 20 0 2073.0531 P54577 P54577 451 470 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 3 1.86E-07 55.206 By MS/MS By matching By MS/MS 1 1 1 0.49326 0.46002 27.513 3 Median 0.49326 0.46002 NaN 1 0 Median 0.48806 0.41909 NaN 1 0 Median 0.70195 0.70228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33808000 21816000 11991000 24951000 16798000 8153200 3396800 2205800 1190900 5459900 2812900 2647000 0 0 0 0 0 0 0 0 0 27955 2482 29422 147207;147208;147209 148173;148174;148175 148174 3 QVETEEAGVVTTATASVNLK TPKAARRGRKRKAEKQVETEEAGVVTTATA EAGVVTTATASVNLKVSPKRGRPAATEVKI K Q V L K V 3 0 1 0 0 1 3 1 0 0 1 1 0 0 0 1 4 0 0 4 0 0 20 0 2046.0481 O75475 O75475 156 175 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 5.2359E-15 89.013 By MS/MS 3 0.73962 0.78646 22.036 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73962 0.78646 22.036 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12057000 7004600 5052000 0 0 0 0 0 0 12057000 7004600 5052000 0 0 0 0 0 0 0 0 0 27956 1674 29423 147210;147211;147212 148176;148177;148178;148179 148176 4 QVEYLVNEK TDQIGMFSFTGLNPKQVEYLVNEKHIYLLP TGLNPKQVEYLVNEKHIYLLPSGRINVSGL K Q V E K H 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1120.5764 P17174 P17174 370 378 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.013733 59.35 By MS/MS 1 1.2888 1.1113 NaN 1 Median NaN NaN NaN 0 0 Median 1.2888 1.1113 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2629300 1229700 1399500 0 0 0 2629300 1229700 1399500 0 0 0 0 0 0 0 0 0 0 0 0 27957 2038 29424 147213 148180 148180 1 QVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR PFEQAKKVITMFVQRQVFAENKDEIALVLF PLSGGDQYQNITVHRHLMLPDFDLLEDIES R Q V H R H 2 1 3 4 0 3 2 4 1 2 3 1 0 2 1 1 3 0 1 3 0 0 37 1 4060.9767 P13010;C9JZ81 P13010 45 81 XRCC5 X-ray repair cross-complementing protein 5 yes no 4 0.026783 12.68 By MS/MS 1 0.93437 0.93415 NaN 1 Median NaN NaN NaN 0 0 Median 0.93437 0.93415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2207500 1110700 1096700 0 0 0 2207500 1110700 1096700 0 0 0 0 0 0 0 0 0 0 0 0 27958 1986 29425 147214 148181;148182 148182 2 QVFEGQNR PAEEIFESVGDRELRQVFEGQNRIHLEIKQ VGDRELRQVFEGQNRIHLEIKQLNRQLDMI R Q V N R I 0 1 1 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 976.47264 P49257 P49257 333 340 LMAN1 Protein ERGIC-53 yes yes 2 0.021359 45.718 By matching By MS/MS 1 1 1.1091 1.0121 0.1091 2 Median 1.0358 1.0114 NaN 1 0 Median 1.1876 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4095100 1753200 2341900 575480 249370 326100 3519600 1503800 2015800 0 0 0 0 0 0 0 0 0 0 0 0 27959 2375 29426 147215;147216 148183 148183 1 QVFGEATK SASSASALGGVKVERQVFGEATKQPGITFI GGVKVERQVFGEATKQPGITFIAAKFDGIL R Q V T K Q 1 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 8 0 878.44978 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;F8WD96;C9JH19;F8W787 A0A1B0GW44 170 177 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.023394 64.567 By MS/MS 1 1.3458 1.2758 NaN 1 Median 1.3458 1.2758 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2450600 1028300 1422300 2450600 1028300 1422300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27960 324 29427 147217 148184 148184 1 QVFGEATKQPGITFIAAK SASSASALGGVKVERQVFGEATKQPGITFI GEATKQPGITFIAAKFDGILGMAYPRISVN R Q V A K F 3 0 0 0 0 2 1 2 0 2 0 2 0 2 1 0 2 0 0 1 0 0 18 1 1905.036 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;A0A1B0GU92;A0A1B0GU03;F8WD96;C9JH19;F8W787 A0A1B0GW44 170 187 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 3 0.019641 18.784 By MS/MS By matching By matching 1 1 1 2.0264 1.8489 39.496 3 Median 1.2895 1.308 NaN 1 0 Median 2.0264 1.8489 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.1991 2.8763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56038000 21709000 34330000 43141000 18173000 24968000 12261000 3373800 8887300 0 0 0 635540 161630 473910 0 0 0 0 0 0 27961 324 29428 147218;147219;147220 148185 148185 1 QVFQSLPK RYVLQAMKHMEPQVKQVFQSLPKSAFSGGY HMEPQVKQVFQSLPKSAFSGGYYRGGFEPK K Q V P K S 0 0 0 0 0 2 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 945.52837 Q96DA6;A0A2R8Y817;F2Z3A7;G5E9V2 Q96DA6 35 42 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes no 2 0.014714 50.703 By MS/MS By MS/MS By matching 1 1 1 1.2011 0.9889 14.31 3 Median 0.89666 0.8137 NaN 1 0 Median 1.2011 0.9889 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3179 1.0755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29997000 15034000 14963000 17451000 9498800 7952600 11637000 5131500 6505800 0 0 0 908350 404070 504280 0 0 0 0 0 0 27962 3625 29429 147221;147222;147223 148186;148187 148186 2 QVGLMVQER RVNLLSFTGSTQVGKQVGLMVQERFGRSLL STQVGKQVGLMVQERFGRSLLELGGNNAII K Q V E R F 0 1 0 0 0 2 1 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 9 0 1058.5543 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0 P49419 281 289 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.00048425 99.136 By MS/MS By MS/MS 1 1 0.51755 0.45846 30.429 2 Median 0.39515 0.36971 NaN 1 1 Median 0.67786 0.56852 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72957000 52117000 20840000 41562000 32834000 8728000 31395000 19283000 12112000 0 0 0 0 0 0 0 0 0 0 0 0 27963 318 29430 147224;147225 148188;148189 148188 2 QVGNAVPPPLAK PDTYRLFGNILDKHRQVGNAVPPPLAKAIG KHRQVGNAVPPPLAKAIGLEIKLCMLAKAR R Q V A K A 2 0 1 0 0 1 0 1 0 0 1 1 0 0 3 0 0 0 0 2 0 0 12 0 1189.6819 P26358 P26358 1575 1586 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.021517 32.14 By MS/MS 1 0.45854 0.51108 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45854 0.51108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3394200 2300400 1093800 0 0 0 0 0 0 3394200 2300400 1093800 0 0 0 0 0 0 0 0 0 27964 2142 29431 147226 148190 148190 1 QVGVGYVDSIQR IGVVGVKMSAVDGQRQVGVGYVDSIQRKLG GQRQVGVGYVDSIQRKLGLCEFPDNDQFSN R Q V Q R K 0 1 0 1 0 2 0 2 0 1 0 0 0 0 0 1 0 0 1 3 0 0 12 0 1319.6834 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8;C9J809 P43246 160 171 MSH2 DNA mismatch repair protein Msh2 yes no 2 5.774E-06 161.17 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0072 0.95774 7.3701 4 Median 0.97459 0.93938 NaN 1 0 Median 1.245 1.0533 NaN 1 0 Median 0.92327 0.97647 NaN 1 0 Median 1.041 0.88329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48601000 23891000 24710000 9485300 4695100 4790200 4359600 2034400 2325200 28206000 13954000 14252000 6550400 3207500 3342800 0 0 0 0 0 0 27965 2324 29432 147227;147228;147229;147230 148191;148192;148193;148194;148195 148193 5 QVHPDTGISSK SRKESYSVYVYKVLKQVHPDTGISSKAMGI KVLKQVHPDTGISSKAMGIMNSFVNDIFER K Q V S K A 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 2 1 0 0 1 0 0 11 0 1167.5884 Q16778;P33778;P23527;P06899;Q8N257;Q96A08;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 48 58 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2 0.00011427 129.85 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 8 5 0.93423 0.90274 15.913 17 Median NaN NaN NaN 0 0 Median 1.4339 1.2475 NaN 1 0 Median 0.93423 0.94439 NaN 1 0 Median 1.3977 1.1565 9.9913 2 0 Median 0.79522 0.83187 9.0296 8 0 Median 1.179 0.93963 6.9292 5 0 Median 74018000 38811000 35207000 0 0 0 1034600 387880 646690 1007600 474750 532900 529360 205730 323630 58588000 31857000 26731000 12858000 5885800 6972500 27966 2117;2521 29433 147231;147232;147233;147234;147235;147236;147237;147238;147239;147240;147241;147242;147243;147244;147245;147246;147247 148196;148197;148198;148199;148200;148201;148202;148203;148204;148205;148206 148205 11 QVHSCLEGLREQLDGLEK DVLSAALKEQLSHSRQVHSCLEGLREQLDG SCLEGLREQLDGLEKTCSQMAGVVQLVKSA R Q V E K T 0 1 0 1 1 2 3 2 1 0 4 1 0 0 0 1 0 0 0 1 0 0 18 1 2110.0477 Q96ER9 Q96ER9 312 329 CCDC51 Coiled-coil domain-containing protein 51 yes yes 3 0.06548 9.2834 By MS/MS 1 0.87316 0.87039 NaN 1 Median 0.87316 0.87039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11144000 6547300 4596700 11144000 6547300 4596700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27967 3640 29434 147248 148207 148207 1 QVIEYAR QKPEDTTIPSTELAKQVIEYARQLEMIV__ IPSTELAKQVIEYARQLEMIV_________ K Q V A R Q 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 877.46577 R4GMR5;P48556 R4GMR5 275 281 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2 0.032878 62.717 By MS/MS 1 1.1206 1.0664 NaN 1 Median 1.1206 1.0664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4281200 2236000 2045100 4281200 2236000 2045100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27968 2362 29435 147249 148208 148208 1 QVIFSAEQTYELMR WMTLLTDALPLLEQKQVIFSAEQTYELMRC KQVIFSAEQTYELMRCLEDLTSRRPVHGES K Q V M R C 1 1 0 0 0 2 2 0 0 1 1 0 1 1 0 1 1 0 1 1 0 0 14 0 1713.8396 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7;J3QL91 Q9BW27 589 602 NUP85 Nuclear pore complex protein Nup85 yes no 2 1.656E-10 101.95 By MS/MS 2 1.113 1.168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.113 1.168 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4864300 2437400 2426800 0 0 0 0 0 0 4864300 2437400 2426800 0 0 0 0 0 0 0 0 0 27969 3861 29436 147250;147251 148209;148210 148210 2 QVIGTGSFFPK GTVWHKDCFTCSNCKQVIGTGSFFPKGEDF SNCKQVIGTGSFFPKGEDFYCVTCHETKFA K Q V P K G 0 0 0 0 0 1 0 2 0 1 0 1 0 2 1 1 1 0 0 1 0 0 11 0 1179.6288 Q5JXI8 Q5JXI8 134 144 FHL1 no no 2 0.00035193 71.451 By MS/MS By MS/MS By MS/MS 2 2 2 1.1504 1.0554 14.338 6 Median 1.2195 1.155 17.378 2 0 Median NaN NaN NaN 0 0 Median 1.2427 1.1801 11.161 2 0 Median 1.1335 0.94628 2.9357 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 169360000 77488000 91869000 141810000 67355000 74451000 0 0 0 22373000 7943700 14430000 5178400 2189900 2988400 0 0 0 0 0 0 27970 3060 29437 147252;147253;147254;147255;147256;147257 148211;148212;148213;148214;148215;148216;148217;148218;148219;148220;148221 148212 11 QVIINLINQK GFQRHFDSQVIIYGKQVIINLINQKGSEKP IIYGKQVIINLINQKGSEKPLEQTFATMVS K Q V Q K G 0 0 2 0 0 2 0 0 0 3 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1181.7132 Q9NTJ5;E9PGZ4;F8WDN7 Q9NTJ5 302 311 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.037233 31.934 By MS/MS By matching 3 2 1.2252 1.182 19.717 5 Median 1.2252 1.182 11.431 3 0 Median 1.4984 1.3296 30.741 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8481100 3651200 4829900 6929600 3138000 3791600 1551500 513210 1038300 0 0 0 0 0 0 0 0 0 0 0 0 27971 4109 29438 147258;147259;147260;147261;147262 148222 148222 1 QVIIQGFR ______________________________ ______________________________ K Q V F R S 0 1 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 0 0 1 0 0 8 0 959.55525 Q9UQE7 Q9UQE7 5 12 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0028333 129.67 By matching By MS/MS By matching By matching 1 2 1 2 1.1058 1.1414 14.669 6 Median NaN NaN NaN 0 0 Median 1.4087 1.2207 NaN 1 0 Median 0.94257 0.98812 14.947 2 0 Median 1.0491 0.8941 NaN 1 0 Median 1.1664 1.1909 0.56031 2 0 Median NaN NaN NaN 0 0 Median 35699000 16496000 19203000 0 0 0 1354100 604010 750090 18940000 8886500 10053000 1294700 585360 709320 14111000 6420000 7691000 0 0 0 27972 4362 29439 147263;147264;147265;147266;147267;147268 148223 148223 1 QVKPLPAPLDGQR IERKFDKWQEPPPVKQVKPLPAPLDGQRKK VKQVKPLPAPLDGQRKKRGGRRYRKMKERL K Q V Q R K 1 1 0 1 0 2 0 1 0 0 2 1 0 0 3 0 0 0 0 1 0 0 13 1 1417.8041 Q8WWY3;E7EVX8 Q8WWY3 339 351 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 0.005306 32.734 By MS/MS 1 0.52323 0.58218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52323 0.58218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1898300 1044100 854190 0 0 0 0 0 0 1898300 1044100 854190 0 0 0 0 0 0 0 0 0 27973 3513 29440 147269 148224 148224 1 QVKPYVEEGLHPQIIIR DGTTSVTLLAAEFLKQVKPYVEEGLHPQII KPYVEEGLHPQIIIRAFRTATQLAVNKIKE K Q V I R A 0 1 0 0 0 2 2 1 1 3 1 1 0 0 2 0 0 0 1 2 0 0 17 1 2018.1313 Q99832;F8WAM2 Q99832 107 123 CCT7 T-complex protein 1 subunit eta yes no 3;4 6.7355E-06 63.631 By MS/MS By matching By MS/MS 2 3 2 0.89036 0.84769 18.111 7 Median 0.82744 0.82824 3.2817 2 0 Median 0.89036 0.81367 23.71 3 0 Median 0.96284 1.0783 3.2831 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106180000 57097000 49087000 72013000 39879000 32133000 19008000 9893700 9114200 15163000 7323900 7839600 0 0 0 0 0 0 0 0 0 27974 3771 29441 147270;147271;147272;147273;147274;147275;147276 148225;148226;148227;148228;148229 148228 5 QVLALQSQLADTK EQQEEEEEARKNLEKQVLALQSQLADTKKK EKQVLALQSQLADTKKKVDDDLGTIESLEE K Q V T K K 2 0 0 1 0 3 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 0 1413.7827 P35580 P35580 1365 1377 MYH10 Myosin-10 yes yes 2 3.7772E-07 152.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.84095 0.86608 29.401 4 Median 1.0713 1.03 NaN 1 0 Median 1.3503 1.1963 NaN 1 0 Median 0.66015 0.72827 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60775 0.6364 NaN 1 0 Median NaN NaN NaN 0 0 Median 53744000 26987000 26757000 23246000 11226000 12019000 11338000 4737600 6600800 12911000 7284300 5626500 0 0 0 6248700 3738200 2510500 0 0 0 27975 2245 29442 147277;147278;147279;147280 148230;148231;148232;148233;148234;148235;148236;148237 148234 8 QVLALQSQLADTKK EQQEEEEEARKNLEKQVLALQSQLADTKKK KQVLALQSQLADTKKKVDDDLGTIESLEEA K Q V K K K 2 0 0 1 0 3 0 0 0 0 3 2 0 0 0 1 1 0 0 1 0 0 14 1 1541.8777 P35580 P35580 1365 1378 MYH10 Myosin-10 yes yes 3 0.00099172 55.213 By MS/MS By MS/MS By matching 1 1 1 0.72889 0.70179 21.64 3 Median 0.95999 0.93902 NaN 1 1 Median 0.72889 0.70179 NaN 1 0 Median 0.53308 0.61521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16886000 9092000 7794100 6625100 3308400 3316800 5530900 2653400 2877500 4730100 3130200 1599800 0 0 0 0 0 0 0 0 0 27976 2245 29443 147281;147282;147283 148238;148239 148238 2 QVLDAVYYLHR EKGFYTEKDASTLIRQVLDAVYYLHRMGIV TLIRQVLDAVYYLHRMGIVHRDLKPENLLY R Q V H R M 1 1 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 0 2 2 0 0 11 0 1375.7248 A0A087WUR6;Q8IU85 A0A087WUR6 33 43 CAMK1D Calcium/calmodulin-dependent protein kinase type 1D yes no 2 0.030487 48.796 By MS/MS 1 0.19709 0.20975 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19709 0.20975 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7131800 5679600 1452200 0 0 0 0 0 0 7131800 5679600 1452200 0 0 0 0 0 0 0 0 0 27977 34 29444 147284 148240 148240 1 QVLDNLTMEK QNLRQGVDADINGLRQVLDNLTMEKSDLEM INGLRQVLDNLTMEKSDLEMQYETLQEELM R Q V E K S 0 0 1 1 0 1 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1189.6013 P35527;CON__P35527;K7EQQ3 P35527 262 271 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.0997E-07 135.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 1 6 5 3 0.10783 0.098432 143.89 26 Median 0.14699 0.1446 94.519 6 6 Median 0.10775 0.092309 59.624 5 5 Median 0.1079 0.10122 NaN 1 1 Median 0.077424 0.064983 103.27 6 6 Median 0.082933 0.082697 239.48 5 5 Median 0.60759 0.52069 228.9 3 3 Median 652360000 252620000 399740000 112720000 87399000 25326000 68221000 62966000 5255900 9638800 8320600 1318200 21066000 19099000 1967500 429620000 66242000 363380000 11091000 8592900 2498600 + 27978 2242 29445;29446 147285;147286;147287;147288;147289;147290;147291;147292;147293;147294;147295;147296;147297;147298;147299;147300;147301;147302;147303;147304;147305;147306;147307;147308;147309;147310;147311 148241;148242;148243;148244;148245;148246;148247;148248;148249;148250;148251;148252;148253;148254;148255;148256;148257;148258;148259;148260;148261;148262;148263;148264;148265;148266;148267 148259 978 27 QVLEDFPTISLEFR YQPDWRFMESKEKDRQVLEDFPTISLEFRN RQVLEDFPTISLEFRNLAEKYQTVIADICR R Q V F R N 0 1 0 1 0 1 2 0 0 1 2 0 0 2 1 1 1 0 0 1 0 0 14 0 1692.8723 E9PJG4;E9PNM1;A0A1W2PQ47;P37268;E9PS69 E9PJG4 120 133 FDFT1 Squalene synthase yes no 2 0.00066409 69.01 By MS/MS 1 0.56641 0.48831 NaN 1 Median NaN NaN NaN 0 0 Median 0.56641 0.48831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2744300 1570600 1173800 0 0 0 2744300 1570600 1173800 0 0 0 0 0 0 0 0 0 0 0 0 27979 342 29447 147312 148268 148268 1 QVLEGEEIAYK NSDKDQSLGNWRIKRQVLEGEEIAYKFTPK RIKRQVLEGEEIAYKFTPKYILRAGQMVTV R Q V Y K F 1 0 0 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1277.6503 Q03252 Q03252 506 516 LMNB2 Lamin-B2 yes yes 2 0.00017515 78.934 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.249 1.106 17.295 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1159 1.106 NaN 1 0 Median 1.5267 1.2819 13.185 2 0 Median 0.91913 0.87838 NaN 1 0 Median 1.249 1.0263 NaN 1 0 Median 68660000 33744000 34916000 0 0 0 0 0 0 34629000 17731000 16898000 3312400 1274700 2037600 24274000 11608000 12666000 6444800 3130500 3314400 27980 2709 29448 147313;147314;147315;147316;147317 148269;148270;148271;148272;148273 148269 5 QVLEPLMNLEVTVAR CVSRCVQKALKKADKQVLEPLMNLEVTVAR QVLEPLMNLEVTVARDYLSPVLADLAQRRG K Q V A R D 1 1 1 0 0 1 2 0 0 0 3 0 1 0 1 0 1 0 0 3 0 0 15 0 1710.9338 Q969S9 Q969S9 684 698 GFM2 Ribosome-releasing factor 2, mitochondrial yes yes 2 0.00044858 49.5 By MS/MS 1 1.2934 1.1275 NaN 1 Median NaN NaN NaN 0 0 Median 1.2934 1.1275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1877600 800670 1076900 0 0 0 1877600 800670 1076900 0 0 0 0 0 0 0 0 0 0 0 0 27981 3587 29449 147318 148274 148274 1 QVLEPSFR LADITVVCTLLWLYKQVLEPSFRQAFPNTN TLLWLYKQVLEPSFRQAFPNTNRWFLTCIN K Q V F R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 8 0 974.51853 P26641 P26641 174 181 EEF1G Elongation factor 1-gamma yes yes 2 0.0023353 113.5 By matching By MS/MS By MS/MS 1 1 1 1.0363 0.97247 14.858 3 Median 1.0363 0.97247 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0524 1.0063 NaN 1 0 Median 0.89693 0.76606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 750330000 372390000 377930000 9724700 4461500 5263200 0 0 0 199170000 92176000 107000000 541430000 275760000 265670000 0 0 0 0 0 0 27982 2149 29450 147319;147320;147321 148275;148276;148277;148278 148278 4 QVLFTPATQAAR TSPLDLKLGHNNWLRQVLFTPATQAARQAA WLRQVLFTPATQAARQAACTIVEALATIPS R Q V A R Q 3 1 0 0 0 2 0 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 12 0 1301.7092 Q5T4S7 Q5T4S7 4131 4142 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.05884 54.608 By MS/MS 1 1.3804 1.1519 NaN 1 Median NaN NaN NaN 0 0 Median 1.3804 1.1519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6248600 2878700 3369900 0 0 0 6248600 2878700 3369900 0 0 0 0 0 0 0 0 0 0 0 0 27983 3089 29451 147322 148279 148279 0 QVLGQMVIDEELLGDGHSYSPR MLGASGDYADFQYLKQVLGQMVIDEELLGD IDEELLGDGHSYSPRAIHSWLTRAMYSRRS K Q V P R A 0 1 0 2 0 2 2 3 1 1 3 0 1 0 1 2 0 0 1 2 0 0 22 0 2442.1849 P28070 P28070 110 131 PSMB4 Proteasome subunit beta type-4 yes yes 3 0.00021917 27.72 By MS/MS By matching 1 1 0.70639 0.67137 33.945 2 Median NaN NaN NaN 0 0 Median 1.0095 0.8535 NaN 1 0 Median 0.49429 0.5281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6209300 3344600 2864700 0 0 0 4211900 2045300 2166600 1997400 1299300 698110 0 0 0 0 0 0 0 0 0 27984 2160 29452 147323;147324 148280;148281 148281 2 QVLIRPCSK DALKSINNAEKRGKRQVLIRPCSKVIVRFL EKRGKRQVLIRPCSKVIVRFLTVMMKHGYI R Q V S K V 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 1 1099.6172 H3BN98;I3L3P7;P62244;I3L246;H3BV27;H3BT37;I3L303 I3L3P7 24 32 RPS15A 40S ribosomal protein S15a no no 2 0.013038 69.812 By matching By MS/MS 1 2 1.0329 0.92645 10.881 3 Median 1.0329 1.0307 NaN 1 0 Median 0.99319 0.87643 7.8493 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11123000 5926400 5196600 471490 226560 244930 10652000 5699900 4951700 0 0 0 0 0 0 0 0 0 0 0 0 27985 1289;1213 29453 147325;147326;147327 148282 148282 1 QVLIYLAR VKLVGNMHGDETVSRQVLIYLARELAAGYR GDETVSRQVLIYLARELAAGYRRGDPRLVR R Q V A R E 1 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 8 0 974.5913 O75976 O75976 147 154 CPD Carboxypeptidase D yes yes 2 0.025095 42.914 By MS/MS 1 0.94829 0.9313 NaN 1 Median 0.94829 0.9313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3137500 1567600 1569900 3137500 1567600 1569900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27986 1714 29454 147328 148283 148283 1 QVLLGDQIPK GVIRLAAIAESGVERQVLLGDQIPKFAVAT SGVERQVLLGDQIPKFAVATLPPA______ R Q V P K F 0 0 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1109.6445 P28072 P28072 221 230 PSMB6 Proteasome subunit beta type-6 yes yes 2 0.0011347 68.224 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0508 0.91205 8.3989 7 Median 1.0769 0.99184 11.859 2 0 Median 1.0539 0.90273 6.4195 3 0 Median 1.003 0.94323 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81817 0.83548 NaN 1 0 Median NaN NaN NaN 0 0 Median 140340000 68237000 72103000 112820000 55066000 57752000 18473000 8979900 9492900 7209800 3339900 3869900 0 0 0 1838200 850480 987680 0 0 0 27987 2161 29455 147329;147330;147331;147332;147333;147334;147335 148284;148285;148286;148287;148288 148285 5 QVLLSAAEAAEVILR DMAILGITESFQVKRQVLLSAAEAAEVILR QVLLSAAEAAEVILRVDNIIKAAPRKRVPD R Q V L R V 4 1 0 0 0 1 2 0 0 1 3 0 0 0 0 1 0 0 0 2 0 0 15 0 1581.909 P78371 P78371 502 516 CCT2 T-complex protein 1 subunit beta yes yes 2 1.3262E-07 97.911 By MS/MS 1 0.34624 0.29145 NaN 1 Median NaN NaN NaN 0 0 Median 0.34624 0.29145 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9581500 7243600 2337900 0 0 0 9581500 7243600 2337900 0 0 0 0 0 0 0 0 0 0 0 0 27988 2644 29456 147336 148289 148289 1 QVLLSEPEEAAALYR ______________________________ QVLLSEPEEAAALYRGLSRQPALSAACLGP R Q V Y R G 3 1 0 0 0 1 3 0 0 0 3 0 0 0 1 1 0 0 1 1 0 0 15 0 1687.8781 C9JIF9;P13798;H7C393;F8WEH5 C9JIF9 4 18 APEH Acylamino-acid-releasing enzyme yes no 2 1.3911E-09 105.32 By MS/MS By matching 1 1 0.94691 0.87801 13.243 2 Median 0.84444 0.79952 NaN 1 0 Median 1.0618 0.9642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8388000 4478600 3909400 7564500 4094800 3469700 823470 383790 439690 0 0 0 0 0 0 0 0 0 0 0 0 27989 699 29457 147337;147338 148290;148291 148291 2 QVLNQDLTFQHIK HGSGDSGQGLRMWIKQVLNQDLTFQHIKII IKQVLNQDLTFQHIKIIYPTAPPRSYTPMK K Q V I K I 0 0 1 1 0 3 0 0 1 1 2 1 0 1 0 0 1 0 0 1 0 0 13 0 1582.8467 Q5VWZ2 Q5VWZ2 43 55 LYPLAL1 Lysophospholipase-like protein 1 yes yes 3 0.031053 19.678 By MS/MS 1 1.5261 1.422 NaN 1 Median 1.5261 1.422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15047000 6405500 8641800 15047000 6405500 8641800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27990 3115 29458 147339 148292 148292 1 QVLQLQASHR QQRKALEAKAAAFEKQVLQLQASHRESEEA AAFEKQVLQLQASHRESEEALQKRLDEVSR K Q V H R E 1 1 0 0 0 3 0 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1178.652 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 865 874 RRBP1 Ribosome-binding protein 1 yes no 2 0.00033784 85.731 By MS/MS 1 1.334 1.1409 NaN 1 Median NaN NaN NaN 0 0 Median 1.334 1.1409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2485400 1070100 1415200 0 0 0 2485400 1070100 1415200 0 0 0 0 0 0 0 0 0 0 0 0 27991 4222 29459 147340 148293;148294 148294 2 QVMGLITHTDSPYIR FCLLYKLFTLKLTRKQVMGLITHTDSPYIR QVMGLITHTDSPYIRALGFMYIRYTQPPTD K Q V I R A 0 1 0 1 0 1 0 1 1 2 1 0 1 0 1 1 2 0 1 1 0 0 15 0 1729.8821 Q5VTL8;A0A0A0MRN0 Q5VTL8 144 158 PRPF38B Pre-mRNA-splicing factor 38B yes no 3 0.00020537 46.408 By MS/MS 1 0.78133 0.79617 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78133 0.79617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10756000 6622000 4134000 0 0 0 0 0 0 10756000 6622000 4134000 0 0 0 0 0 0 0 0 0 27992 3111 29460 147341 148295;148296 148295 2 QVMMFSATLSK RRDVQEIFRMTPHEKQVMMFSATLSKEIRP PHEKQVMMFSATLSKEIRPVCRKFMQDPME K Q V S K E 1 0 0 0 0 1 0 0 0 0 1 1 2 1 0 2 1 0 0 1 0 0 11 0 1241.6148 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;H0YCC6 Q13838 223 233 DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.00014526 86.882 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 3 3 2 1.1019 1.0199 25.272 12 Median 1.2761 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1831 1.1276 7.0258 3 1 Plateau 1.2701 1.1437 10.219 3 1 Plateau 0.7982 0.81571 15.941 3 0 Median 1.0121 0.85497 67.098 2 0 Median 212640000 100400000 112240000 4367300 1990300 2377000 0 0 0 141990000 66791000 75197000 45401000 20563000 24838000 17842000 8850500 8991000 3045200 2206400 838860 27993 2842 29461;29462 147342;147343;147344;147345;147346;147347;147348;147349;147350;147351;147352;147353;147354 148297;148298;148299;148300;148301;148302;148303;148304;148305;148306;148307;148308;148309;148310 148298 1525;1526 14 QVNELVR LPRGQHPNPLREKNRQVNELVRAALAGHPR NPLREKNRQVNELVRAALAGHPRAHFLDAD R Q V V R A 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 856.47667 Q15102;M0R389;M0R1K3 Q15102 154 160 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 0.017757 64.803 By MS/MS 1 0.77465 0.7306 NaN 1 Median 0.77465 0.7306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3269700 1511900 1757900 3269700 1511900 1757900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27994 2928 29463 147355 148311 148311 1 QVNITVQK LDLVKPEPVYKLTQRQVNITVQKKVSQWWE VYKLTQRQVNITVQKKVSQWWERLTKQEKR R Q V Q K K 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 8 0 928.53418 Q9P035;H3BS72;H3BPZ1 Q9P035 77 84 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.0034237 97.093 By matching By MS/MS By MS/MS 2 2 1 1.1983 1.2717 29.563 5 Median 0.7989 0.78515 21.954 2 0 Median 1.4485 1.2864 1.6206 2 0 Median 1.1983 1.3136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27280000 12009000 15271000 3809400 2185700 1623700 21596000 9020200 12576000 1874800 803210 1071600 0 0 0 0 0 0 0 0 0 27995 4200 29464 147356;147357;147358;147359;147360 148312;148313;148314;148315;148316;148317 148315 6 QVPNESFFNFFNPLK KQKHKGRGTVRTITKQVPNESFFNFFNPLK QVPNESFFNFFNPLKASGDGESLDEDSEFT K Q V L K A 0 0 3 0 0 1 1 0 0 0 1 1 0 4 2 1 0 0 0 1 0 0 15 0 1826.8992 Q99733;H0YCI4 Q99733 283 297 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 2.2517E-06 92.866 By MS/MS By matching By matching By matching 1 1 1 1 0.81017 0.76271 5.5704 4 Median 0.77524 0.7243 NaN 1 0 Median 0.84668 0.73899 NaN 1 0 Median 0.76917 0.7872 NaN 1 0 Median 0.92935 0.81691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11083000 6015200 5067600 8255600 4478000 3777600 1169800 611180 558590 1340500 760350 580150 316970 165680 151290 0 0 0 0 0 0 27996 3766 29465 147361;147362;147363;147364 148318 148318 1 QVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEK PSPINMGAVVPQGSRQVPVMQGTGMQGASI FSPGQNQVTPQDHEKAALIMQVLQLTADQI R Q V E K A 1 0 1 1 0 8 1 8 1 1 0 1 2 1 4 3 2 0 0 3 0 0 38 0 3863.7955 P33240;E7EWR4 P33240 500 537 CSTF2 Cleavage stimulation factor subunit 2 yes no 3;4 1.3714E-08 51.868 By MS/MS 2 0.52805 0.54058 4.1733 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52805 0.54058 4.1733 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18235000 13204000 5030300 0 0 0 0 0 0 18235000 13204000 5030300 0 0 0 0 0 0 0 0 0 27997 2222 29466 147365;147366 148319;148320 148320 2 QVQEEISR CQDVENLQKFVKEQKQVQEEISRMSSKAML KFVKEQKQVQEEISRMSSKAMLKVQEDIKA K Q V S R M 0 1 0 0 0 2 2 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 8 0 987.49852 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 214 221 NUPL1 Nucleoporin p58/p45 yes no 2 0.014021 71.342 By MS/MS 1 0.23047 0.23439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23047 0.23439 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12789000 10919000 1870400 0 0 0 0 0 0 12789000 10919000 1870400 0 0 0 0 0 0 0 0 0 27998 1247 29467 147367 148321 148321 1 QVQEFLK IEQSGPPSKEILTLKQVQEFLKDGDDVIII SKEILTLKQVQEFLKDGDDVIIIGVFKGES K Q V L K D 0 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 890.48617 P13667;A0A499FI48 P13667 295 301 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.050767 52.683 By MS/MS 1 1.0507 0.91872 NaN 1 Median NaN NaN NaN 0 0 Median 1.0507 0.91872 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4898600 2516800 2381800 0 0 0 4898600 2516800 2381800 0 0 0 0 0 0 0 0 0 0 0 0 27999 1993 29468 147368 148322 148322 1 QVQEFLKDGDDVIIIGVFK IEQSGPPSKEILTLKQVQEFLKDGDDVIII FLKDGDDVIIIGVFKGESDPAYQQYQDAAN K Q V F K G 0 0 0 3 0 2 1 2 0 3 1 2 0 2 0 0 0 0 0 3 0 0 19 1 2162.1623 P13667;A0A499FI48 P13667 295 313 PDIA4 Protein disulfide-isomerase A4 yes no 3 0.00068261 31.233 By MS/MS 1 1.3856 1.3394 NaN 1 Median NaN NaN NaN 0 0 Median 1.3856 1.3394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1150000 491380 658640 0 0 0 1150000 491380 658640 0 0 0 0 0 0 0 0 0 0 0 0 28000 1993 29469 147369 148323 148323 1 QVQHEESTEGEADHSGYAGELGFR NVDFDAPLGYKEPERQVQHEESTEGEADHS GEADHSGYAGELGFRAFSGSGNRLDGKKKG R Q V F R A 2 1 0 1 0 2 5 4 2 0 1 0 0 1 0 2 1 0 1 1 0 0 24 0 2632.1426 Q92890;C9JNP9 Q92890 203 226 UFD1L Ubiquitin fusion degradation protein 1 homolog yes no 4 7.8736E-08 41.208 By matching By MS/MS By MS/MS 1 2 1 1.1833 1.1684 22.802 4 Median 1.1548 1.1475 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1327 1.1684 2.3291 2 0 Median 2.0596 1.8304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20571000 9253300 11318000 8000700 3672100 4328600 0 0 0 11202000 5192400 6009400 1368800 388800 979960 0 0 0 0 0 0 28001 3562 29470 147370;147371;147372;147373 148324;148325;148326 148325 3 QVQHILASASPSGR KTQPPEDISCIAWNRQVQHILASASPSGRA RQVQHILASASPSGRATVWDLRKNEPIIKV R Q V G R A 2 1 0 0 0 2 0 1 1 1 1 0 0 0 1 3 0 0 0 1 0 0 14 0 1449.7688 D6REX3;O94979;D6RHZ5;H0Y9T9 D6REX3 179 192 SEC31A Protein transport protein Sec31A yes no 2 8.3241E-05 88.187 By MS/MS 2 1.0895 0.92691 6.0513 2 Median NaN NaN NaN 0 0 Median 1.0895 0.92691 6.0513 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7078400 3301500 3776900 0 0 0 7078400 3301500 3776900 0 0 0 0 0 0 0 0 0 0 0 0 28002 823 29471 147374;147375 148327;148328 148328 2 QVQIDGLVVLK GKGKGKGGSGDSAVKQVQIDGLVVLKIIKH SAVKQVQIDGLVVLKIIKHYQEEGQGTEVV K Q V L K I 0 0 0 1 0 2 0 1 0 1 2 1 0 0 0 0 0 0 0 3 0 0 11 0 1210.7285 B3KS98;O15372;E5RFW7;E5RFH0 B3KS98 52 62 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.0071706 42.864 By MS/MS By matching 1 2 1.2761 1.0874 38.492 3 Median NaN NaN NaN 0 0 Median 1.2761 1.0874 NaN 1 0 Median 1.0815 1.1035 54.423 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16080000 7109800 8970600 0 0 0 14401000 6409400 7991300 1679700 700410 979290 0 0 0 0 0 0 0 0 0 28003 584 29472 147376;147377;147378 148329 148329 1 QVQPEGPYR DSIHSLAAYYIDCIRQVQPEGPYRVAGYSY YIDCIRQVQPEGPYRVAGYSYGACVAFEMC R Q V Y R V 0 1 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 9 0 1072.5302 P49327;A0A0U1RQF0 P49327 2295 2303 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00050647 119.41 By MS/MS By MS/MS 1 3 1.1211 0.9577 13.28 3 Plateau 0.7454 0.74062 NaN 1 0 Median 1.0842 0.92446 4.9949 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12105000 5794400 6310900 2490800 1436300 1054500 9614500 4358100 5256400 0 0 0 0 0 0 0 0 0 0 0 0 28004 2377 29473 147379;147380;147381;147382 148330;148331;148332;148333;148334;148335;148336 148333 7 QVQQPSVAQLR EQEMQECTTQIQYLKQVQQPSVAQLRSTMV QYLKQVQQPSVAQLRSTMVDPAINLFFLKM K Q V L R S 1 1 0 0 0 4 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 0 1252.6888 Q15007;A0A087X1R4 Q15007 99 109 WTAP Pre-mRNA-splicing regulator WTAP yes no 2 4.279E-08 135.83 By MS/MS By matching 2 1 0.80181 0.82284 11.51 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73831 0.75843 14.855 2 1 Median 0.95152 0.82284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6849000 3742600 3106500 0 0 0 0 0 0 5928400 3344200 2584200 920660 398370 522290 0 0 0 0 0 0 28005 2910 29474 147383;147384;147385 148337;148338 148338 2 QVQSLLELR EGEDEAKRYQEFQNRQVQSLLELREAQVDA QEFQNRQVQSLLELREAQVDAEAQRRLEHL R Q V L R E 0 1 0 0 0 2 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1084.6241 Q01970 Q01970 1038 1046 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.0014358 81.548 By MS/MS By matching 2 2 1.1535 1.1019 47.135 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94049 0.99622 30.099 2 0 Median 1.8109 1.5324 62.487 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4875700 1989800 2885900 0 0 0 0 0 0 4233000 1812800 2420100 642800 177020 465770 0 0 0 0 0 0 28006 2695 29475 147386;147387;147388;147389 148339;148340 148340 2 QVQSLMVHQR VRSVVTTARMQVLKRQVQSLMVHQRKLEAE QVLKRQVQSLMVHQRKLEAELLQIEERHQE R Q V Q R K 0 1 0 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 0 2 0 0 10 0 1224.6397 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;J3QR61 Q969G3 230 239 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 0.0013387 51.445 By matching By MS/MS By matching 1 2 1 0.97159 1.0153 24.737 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88705 0.90991 15.5 2 0 Median 1.5326 1.336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5214900 2284200 2930700 998150 166490 831660 0 0 0 3777100 1931600 1845500 439580 186080 253500 0 0 0 0 0 0 28007 389 29476 147390;147391;147392;147393 148341;148342;148343 148343 3 QVQSLTCEVDALK DALRQAKQESTEYRRQVQSLTCEVDALKGT RRQVQSLTCEVDALKGTNESLERQMREMEE R Q V L K G 1 0 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1489.7446 P08670;B0YJC4;B0YJC5 P08670 322 334 VIM Vimentin yes no 2 0.0003807 74.944 By matching By MS/MS By matching 2 1 1 1.0098 0.91119 15.132 4 Median NaN NaN NaN 0 0 Median 1.0972 0.93785 13.947 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0244 0.97704 NaN 1 0 Median 0.86599 0.73798 NaN 1 0 Median 12105000 6274200 5830600 0 0 0 2846100 1207800 1638300 0 0 0 0 0 0 8666100 4766300 3899800 592590 300070 292510 28008 1907 29477 147394;147395;147396;147397 148344;148345 148344 2 QVQSLTCEVDALKGTNESLER DALRQAKQESTEYRRQVQSLTCEVDALKGT CEVDALKGTNESLERQMREMEENFAVEAAN R Q V E R Q 1 1 1 1 1 2 3 1 0 0 3 1 0 0 0 2 2 0 0 2 0 0 21 1 2376.1591 P08670;B0YJC4;B0YJC5 P08670 322 342 VIM Vimentin yes no 3 2.043E-12 80.156 By matching By MS/MS 1 1 0.99832 1.0096 16.612 2 Median 0.89418 0.89768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1146 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median 26801000 12522000 14279000 2811900 1348900 1463000 0 0 0 0 0 0 0 0 0 23989000 11173000 12816000 0 0 0 28009 1907 29478 147398;147399 148346;148347 148347 2 QVQSQAHGLQMR LKEQMKAKRKEAELRQVQSQAHGLQMRLKY ELRQVQSQAHGLQMRLKYSQSDLEQTKTRH R Q V M R L 1 1 0 0 0 4 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1381.6885 Q14683;G8JLG1 Q14683 700 711 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 0.00021882 75.378 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1.0158 1.0586 17.117 6 Median 1.0911 1.0876 NaN 1 0 Median 1.4964 1.2749 NaN 1 0 Median 0.86575 0.94738 11.872 2 0 Median NaN NaN NaN 0 0 Median 0.95428 0.99676 26.078 2 0 Median NaN NaN NaN 0 0 Median 14399000 6688400 7710900 588180 238430 349750 3354400 1304700 2049700 5324700 2660300 2664400 0 0 0 5132000 2484900 2647100 0 0 0 28010 2889 29479 147400;147401;147402;147403;147404;147405;147406 148348;148349;148350;148351;148352;148353;148354;148355 148353 8 QVQTLQDELQK EQYSTSLAQSEAELKQVQTLQDELQKFLQD AELKQVQTLQDELQKFLQDHKEFESWLERS K Q V Q K F 0 0 0 1 0 4 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1328.6936 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3871 3881 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0002087 74.376 By MS/MS 1 1.1192 1.1113 NaN 1 Median 1.1192 1.1113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4142700 2237500 1905300 4142700 2237500 1905300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28011 1220 29480 147407 148356;148357 148356 2 QVQVALETAQR EAERRLRQAEVERARQVQVALETAQRSAEA ERARQVQVALETAQRSAEAELQSKRASFAE R Q V Q R S 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1241.6728 Q15149 Q15149 1699 1709 PLEC Plectin yes yes 2 4.3047E-08 169.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1 1 1.5487 1.2828 30.943 9 Median 1.3137 1.2828 NaN 1 0 Median 1.6282 1.4798 32.359 3 0 Median 0.74785 0.84774 19.693 2 1 Median 1.7278 1.504 NaN 1 0 Median 1.702 1.7831 NaN 1 1 Median 1.5487 1.2826 NaN 1 0 Median 67845000 27024000 40821000 14033000 5125700 8907500 34238000 14157000 20081000 6883800 3602600 3281200 1634300 549830 1084500 4419000 1127100 3291900 6637300 2462500 4174800 28012 2933 29481 147408;147409;147410;147411;147412;147413;147414;147415;147416 148358;148359;148360;148361;148362;148363;148364;148365;148366;148367;148368 148359 11 QVSASELHTSGILGPETLR TEERLSKVSFRGLRRQVSASELHTSGILGP SELHTSGILGPETLRDLAQGTKTLQEVTEM R Q V L R D 1 1 0 0 0 1 2 2 1 1 3 0 0 0 1 3 2 0 0 1 0 0 19 0 1994.0433 P58107;A0A075B730 P58107 2716 2734 EPPK1 Epiplakin yes no 2;3 1.6202E-08 80.316 By MS/MS By MS/MS 2 1 1.0722 0.91433 9.1653 3 Median 1.0057 0.98103 9.9586 2 0 Median 1.0974 0.88625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57210000 31116000 26094000 44707000 26538000 18169000 12502000 4577600 7924500 0 0 0 0 0 0 0 0 0 0 0 0 28013 2520 29482 147417;147418;147419 148369;148370;148371 148369 3 QVSDDLTER FDAGELITQRELVSRQVSDDLTERAATFGL RELVSRQVSDDLTERAATFGLILDDVSLTH R Q V E R A 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1061.4989 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2 P35232 149 157 PHB Prohibitin yes no 2 0.00091763 90.709 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.1963 1.0641 24.18 6 Median 0.93709 0.88022 1.3752 2 0 Median 1.5396 1.2974 2.5838 2 0 Median 0.81419 0.80464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6871 1.3672 NaN 1 0 Median 41876000 19119000 22757000 25768000 12411000 13357000 11487000 4795700 6690800 3972500 1710500 2261900 0 0 0 0 0 0 649140 201910 447230 28014 2233 29483 147420;147421;147422;147423;147424;147425 148372;148373;148374;148375;148376;148377;148378;148379 148373 8 QVSDLISVLR KTGTAYTFFTPNNIKQVSDLISVLREANQA PNNIKQVSDLISVLREANQAINPKLLQLVE K Q V L R E 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1128.6503 J3KTA4;P17844 J3KTA4 452 461 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.00035174 83.948 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 3 3 2 5 3 1.3638 1.2271 20.102 17 Median 1.4797 1.3996 NaN 1 0 Median 1.3638 1.1802 37.682 3 0 Median 1.2597 1.2538 20.04 3 0 Median 1.3915 1.1892 2.9479 2 0 Median 1.2984 1.3137 8.1299 5 0 Median 1.4333 1.1638 12.552 3 0 Median 225970000 97791000 128180000 18526000 7741400 10785000 14633000 6175700 8457200 136790000 59186000 77609000 2467800 978170 1489600 51060000 22671000 28390000 2490600 1038300 1452300 28015 1334 29484 147426;147427;147428;147429;147430;147431;147432;147433;147434;147435;147436;147437;147438;147439;147440;147441;147442 148380;148381;148382;148383;148384;148385;148386;148387;148388;148389;148390;148391;148392;148393;148394;148395 148390 16 QVSIEEGER IIMLVGNKTDLADKRQVSIEEGERKAKELN DLADKRQVSIEEGERKAKELNVMFIETSAK R Q V E R K 0 1 0 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 9 0 1045.504 P20340 P20340 135 143 RAB6A Ras-related protein Rab-6A no no 2 0.0038329 62.546 By MS/MS By MS/MS 1 1 1.1937 1.0689 2.8004 2 Median 1.1552 1.0903 NaN 1 0 Median 1.2334 1.0479 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6580100 2856900 3723200 4910200 2199300 2710900 1669900 657580 1012300 0 0 0 0 0 0 0 0 0 0 0 0 28016 2079 29485 147443;147444 148396;148397;148398 148397 3 QVSITASTR HGDLMYLFVITAEDRQVSITASTRGFYLNQ ITAEDRQVSITASTRGFYLNQSTAYHFNPK R Q V T R G 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 2 2 0 0 1 0 0 9 0 961.51926 O75153;K7EIG1;I3L2B0;A0A494C0R8;I3L4B5 O75153 248 256 CLUH Clustered mitochondria protein homolog yes no 2 0.018498 40.724 By MS/MS 1 1.2564 1.0747 NaN 1 Median NaN NaN NaN 0 0 Median 1.2564 1.0747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2383600 1126100 1257500 0 0 0 2383600 1126100 1257500 0 0 0 0 0 0 0 0 0 0 0 0 28017 1651 29486 147445 148399 148399 1 QVSPIESLR NIRESTSYIEEHIDRQVSPIESLRLMCLLS EEHIDRQVSPIESLRLMCLLSITENGLIPK R Q V L R L 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 2 0 0 0 1 0 0 9 0 1027.5662 F5H008;A0A2R8YDQ0;Q9H267 F5H008 363 371 VPS33B Vacuolar protein sorting-associated protein 33B yes no 2 0.028744 36.701 By MS/MS 1 1.6444 1.6286 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6444 1.6286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5134000 1725200 3408800 0 0 0 0 0 0 5134000 1725200 3408800 0 0 0 0 0 0 0 0 0 28018 397 29487 147446 148400 148400 1 QVSSHIQVLAR ARYIKLRTGKTRTRKQVSSHIQVLARRKSR RTRKQVSSHIQVLARRKSRDFHSKLKDQTA K Q V A R R 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1236.6939 H0YE88;P28347;H0YEJ9;H0YGS2;A0A0A0MRF3;Q53GI4;A0A1X7SBS4;Q15561;Q99594;Q15562;H0YG62 H0YE88 89 99 TEAD1;TEAD4;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-3;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 yes no 3 0.000101 71.03 By MS/MS By matching By MS/MS 1 1 1 1.2437 1.1226 21.614 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2437 1.2265 NaN 1 0 Median 1.2875 1.1226 NaN 1 0 Median 0.80724 0.81342 NaN 1 1 Median NaN NaN NaN 0 0 Median 14642000 6870000 7771800 0 0 0 0 0 0 11741000 5384400 6356500 432650 190880 241770 2468200 1294700 1173500 0 0 0 28019 1178 29488 147447;147448;147449 148401;148402;148403 148402 3 QVSSLSSGVIQEALATNMK LLQSIGEVEQNLEGKQVSSLSSGVIQEALA LSSGVIQEALATNMKLKQDIARQKSSLEAT K Q V M K L 2 0 1 0 0 2 1 1 0 1 2 1 1 0 0 4 1 0 0 2 0 0 19 0 1962.0092 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4134 4152 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 7.5844E-06 50.563 By MS/MS 1 0.89509 0.88881 NaN 1 Median 0.89509 0.88881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4153200 2184100 1969100 4153200 2184100 1969100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28020 1220 29489 147450 148404;148405 148405 2 QVSVFQAMK AEGAIAGFRDPFSGKQVSVFQAMKKGLIPW DPFSGKQVSVFQAMKKGLIPWEQAARLLEA K Q V M K K 1 0 0 0 0 2 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 9 0 1036.5376 P58107;A0A075B730 P58107 1019 1027 EPPK1 Epiplakin yes no 2 0.039605 33.797 By matching By MS/MS 1 2 1.5987 1.3941 25.148 3 Median 1.2755 1.2702 NaN 1 0 Median 1.9111 1.6871 26.976 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9353800 4004400 5349400 5729000 2759200 2969800 3624800 1245100 2379700 0 0 0 0 0 0 0 0 0 0 0 0 28021 2520 29490 147451;147452;147453 148406 148406 1 QVTALQEEGTLGLYHAQLK KEIESLKVSISQLTRQVTALQEEGTLGLYH LQEEGTLGLYHAQLKVKEEEVHRLSALFSS R Q V L K V 2 0 0 0 0 3 2 2 1 0 4 1 0 0 0 0 2 0 1 1 0 0 19 0 2098.1059 Q14789 Q14789 2617 2635 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.059466 8.1518 By MS/MS By matching 1 1 1.0341 0.96713 7.0156 2 Median 1.122 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95312 0.92032 NaN 1 0 Median NaN NaN NaN 0 0 Median 12737000 6210100 6526900 12382000 6036400 6345700 0 0 0 0 0 0 0 0 0 354910 173700 181220 0 0 0 28022 2900 29491 147454;147455 148407 148407 1 QVTGQPQNASFVK LKSELGNQSPSTSSRQVTGQPQNASFVKRN SRQVTGQPQNASFVKRNRWWLLPLIAALAS R Q V V K R 1 0 1 0 0 3 0 1 0 0 0 1 0 1 1 1 1 0 0 2 0 0 13 0 1402.7205 A0A0A0MSK5;Q5JTV8;J3KN66 J3KN66 338 350 TOR1AIP1 Torsin-1A-interacting protein 1 no no 2 0.0041416 41.704 By matching By MS/MS 1 1 0.98495 0.93784 9.8654 2 Median NaN NaN NaN 0 0 Median 1.1402 1.0056 NaN 1 0 Median 0.85086 0.87464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3602600 1797900 1804700 0 0 0 731140 344400 386740 2871500 1453500 1418000 0 0 0 0 0 0 0 0 0 28023 182;1302 29492 147456;147457 148408;148409 148409 2 QVTQEEGQQLAR PMILIGNKADLDHQRQVTQEEGQQLARQLK HQRQVTQEEGQQLARQLKVTYMEASAKIRM R Q V A R Q 1 1 0 0 0 4 2 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1385.6899 P62070;E9PK85 P62070 136 147 RRAS2 Ras-related protein R-Ras2 yes no 2 0.00082706 60.398 By MS/MS By matching 1 1 1.3325 1.1957 22.955 2 Median 1.0793 1.0165 NaN 1 0 Median 1.6451 1.4064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2059600 956730 1102900 1570500 745660 824810 489170 211060 278100 0 0 0 0 0 0 0 0 0 0 0 0 28024 2567 29493 147458;147459 148410;148411 148410 2 QVTQLAIDTEER ILNKLTPQMFQQLMKQVTQLAIDTEERLKG LMKQVTQLAIDTEERLKGVIDLIFEKAISE K Q V E R L 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1401.71 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 619 630 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 9.8667E-22 199.08 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.1592 0.9721 23.947 5 Median 1.4085 1.3218 NaN 1 0 Median 1.041 0.87933 14.184 2 1 Median 1.1835 1.2898 NaN 1 0 Median 0.94274 0.82901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61837000 29159000 32678000 22571000 9955700 12616000 22559000 11009000 11550000 13204000 6480700 6722900 3503100 1713900 1789100 0 0 0 0 0 0 28025 894 29494 147460;147461;147462;147463;147464;147465;147466 148412;148413;148414;148415;148416;148417;148418;148419;148420 148413 9 QVTSNSLSGTQEDGLDDPR VILAKYGLDGKKDARQVTSNSLSGTQEDGL NSLSGTQEDGLDDPRLEKLWHKAKTSGKFS R Q V P R L 0 1 1 3 0 2 1 2 0 0 2 0 0 0 1 3 2 0 0 1 0 0 19 0 2017.9189 P30533;A0A3B3IRQ7 P30533 132 150 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 3.556E-05 48.659 By MS/MS 1 1.0045 1.0894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0045 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3082400 1466700 1615700 0 0 0 0 0 0 3082400 1466700 1615700 0 0 0 0 0 0 0 0 0 28026 2196 29495 147467 148421 148421 1 QVTSNSLSGTQEDGLDDPRLEK VILAKYGLDGKKDARQVTSNSLSGTQEDGL SGTQEDGLDDPRLEKLWHKAKTSGKFSGEE R Q V E K L 0 1 1 3 0 2 2 2 0 0 3 1 0 0 1 3 2 0 0 1 0 0 22 1 2388.1405 P30533;A0A3B3IRQ7 P30533 132 153 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 3 0.00026872 41.257 By MS/MS By matching 2 1 1.0288 0.93256 14.893 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92301 1.0506 16.853 2 1 Median 1.0288 0.90001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23513000 11319000 12194000 0 0 0 0 0 0 21430000 10193000 11237000 2083100 1126300 956820 0 0 0 0 0 0 28027 2196 29496 147468;147469;147470 148422;148423 148422 2 QVTTAENLKDQTVYIVLDK EITCETFNDFVRLFKQVTTAENLKDQTVYI AENLKDQTVYIVLDKAEYLRDMEANLLPGF K Q V D K A 1 0 1 2 0 2 1 0 0 1 2 2 0 0 0 0 3 0 1 3 0 0 19 1 2177.158 O43913 O43913 108 126 ORC5 Origin recognition complex subunit 5 yes yes 3 3.1472E-05 44.382 By MS/MS 1 1.023 1.0727 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.023 1.0727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5988700 2962500 3026200 0 0 0 0 0 0 5988700 2962500 3026200 0 0 0 0 0 0 0 0 0 28028 1599 29497 147471 148424;148425 148424 2 QVTVLELFR IQEMKDESARMSQEKQVTVLELFRVSSYRQ RMSQEKQVTVLELFRVSSYRQPIIISIVLQ K Q V F R V 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 9 0 1103.6339 P11169;Q8TDB8 P11169 254 262 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 2 0.016483 42.599 By MS/MS By matching By matching 2 2 1 1.8406 1.8486 47.252 5 Median 2.019 2.0128 12.039 2 0 Median 1.1964 0.99225 39.717 2 0 Median 2.1334 2.3892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29320000 13396000 15923000 9116700 2874200 6242500 19448000 10272000 9175400 755480 249960 505520 0 0 0 0 0 0 0 0 0 28029 1952 29498 147472;147473;147474;147475;147476 148426;148427 148426 2 QVVAVTGDGTNDGPALK TLVKGIIDSTVGEHRQVVAVTGDGTNDGPA VAVTGDGTNDGPALKKADVGFAMGIAGTDV R Q V L K K 2 0 1 2 0 1 0 3 0 0 1 1 0 0 1 0 2 0 0 3 0 0 17 0 1640.837 P20020;E7ERY9;A0A2R8Y4R4;A0A2U3U055;A0A2U3TZI3;Q01814;P23634 P23634 778 794 ATP2B1;ATP2B2;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 4 no no 2 1.5172E-14 115.14 By MS/MS By MS/MS 1 3 0.94158 0.82986 18.225 4 Median 0.78385 0.78076 NaN 1 1 Median 1.3093 1.1442 19.626 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14871000 7544400 7326300 5842300 3679000 2163300 9028400 3865400 5163000 0 0 0 0 0 0 0 0 0 0 0 0 28030 2119;2071 29499 147477;147478;147479;147480 148428;148429;148430;148431 148428 4 QVVEEPSPQLPADR RFPYESWGTPFQQLKQVVEEPSPQLPADRF KQVVEEPSPQLPADRFSPEFVDFTAQCLRK K Q V D R F 1 1 0 1 0 2 2 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 14 0 1563.7893 P46734;J3KRV4 P46734 280 293 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 2 0.0004518 69.979 By MS/MS 1 0.7091 0.76989 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7091 0.76989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2758900 1540000 1218900 0 0 0 0 0 0 2758900 1540000 1218900 0 0 0 0 0 0 0 0 0 28031 2343 29500 147481 148432 148432 1 QVVESAYEVIK LGTDKDKEQWKEVHKQVVESAYEVIKLKGY EVHKQVVESAYEVIKLKGYTSWAIGLSVAD K Q V I K L 1 0 0 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 1 3 0 0 11 0 1263.6711 P00338 P00338 233 243 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00016036 81.525 By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 1 1.1458 1.0264 19.323 12 Median 1.1665 1.1133 10.963 5 0 Median 1.078 0.8994 28.214 5 0 Median 1.2137 1.1693 NaN 1 0 Median 1.1211 0.94512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 885440000 400730000 484710000 727960000 327470000 400490000 132430000 62965000 69465000 22303000 9372200 12931000 2742700 919570 1823100 0 0 0 0 0 0 28032 1813 29501 147482;147483;147484;147485;147486;147487;147488;147489;147490;147491;147492;147493 148433;148434;148435;148436;148437;148438;148439;148440;148441;148442;148443;148444;148445;148446;148447;148448;148449 148434 17 QVVILSQDSFYR IVQLLGQNEVDYRQKQVVILSQDSFYRVLT RQKQVVILSQDSFYRVLTSEQKAKALKGQF K Q V Y R V 0 1 0 1 0 2 0 0 0 1 1 0 0 1 0 2 0 0 1 2 0 0 12 0 1453.7565 A0A2R8Y653;Q9BZX2 A0A2R8Y653 34 45 UCK2 Uridine-cytidine kinase 2 yes no 2 0.0010299 86.624 By MS/MS 2 1.2148 1.1597 3.3601 2 Median 1.2148 1.1597 3.3601 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7554900 3501300 4053600 7554900 3501300 4053600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28033 374 29502 147494;147495 148450;148451 148450 2 QVVIQQQIAIHHQQQFQHR HSLIQQQQQIHLQQKQVVIQQQIAIHHQQQ QQQIAIHHQQQFQHRQSQLLHTATHLQLAQ K Q V H R Q 1 1 0 0 0 8 0 0 3 3 0 0 0 1 0 0 0 0 0 2 0 0 19 0 2365.2516 P78364;J3KQH6;H0YGK7 P78364 392 410 PHC1 Polyhomeotic-like protein 1 yes no 4 0.0076739 22.985 By MS/MS 1 1.0285 1.1314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0285 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4916600 2376800 2539800 0 0 0 0 0 0 4916600 2376800 2539800 0 0 0 0 0 0 0 0 0 28034 1318 29503 147496 148452 148452 1 QVVNFGPGPAK ______________________________ DAPRQVVNFGPGPAKLPHSVLLEIQKELLD R Q V A K L 1 0 1 0 0 1 0 2 0 0 0 1 0 1 2 0 0 0 0 2 0 0 11 0 1112.5978 Q9Y617 Q9Y617 6 16 PSAT1 Phosphoserine aminotransferase yes yes 2 0.00045118 71.379 By MS/MS By MS/MS 1 1 0.8205 0.73414 12.652 2 Median 0.72104 0.67132 NaN 1 0 Median 0.93368 0.80285 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12566000 7043000 5522900 9166100 5332100 3834000 3399700 1710800 1688900 0 0 0 0 0 0 0 0 0 0 0 0 28035 4476 29504 147497;147498 148453;148454 148453 2 QVVNIPSFIVR HARVLIRQRHIRVRKQVVNIPSFIVRLDSQ RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY K Q V V R L 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 3 0 0 11 0 1270.7398 P46781 P46781 140 150 RPS9 40S ribosomal protein S9 yes yes 2 0.00013837 87.308 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 2 1 1.0935 0.96454 11.724 8 Median 0.97224 0.93157 1.3854 2 0 Median 1.0496 0.88777 NaN 1 0 Median 1.031 0.98894 NaN 1 0 Median 1.2791 1.0537 NaN 1 0 Median 1.1562 1.1959 1.1159 2 0 Median 1.156 0.92967 NaN 1 0 Median 209250000 96744000 112500000 146150000 71935000 74215000 12245000 5963900 6281300 5845200 2812800 3032400 618390 245050 373350 37546000 12605000 24941000 6841200 3181600 3659700 28036 2345 29505 147499;147500;147501;147502;147503;147504;147505;147506 148455;148456;148457;148458;148459;148460;148461 148456 7 QVVQGLLSETYLEAHR SVTGIFLPILRTGFRQVVQGLLSETYLEAH VVQGLLSETYLEAHRIVKMNKSEDDESGAG R Q V H R I 1 1 0 0 0 2 2 1 1 0 3 0 0 0 0 1 1 0 1 2 0 0 16 0 1841.9636 P33993 P33993 287 302 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 3.5915E-05 66.262 By MS/MS By matching By MS/MS 2 2 1 0.94532 0.89402 11.897 5 Median 0.92549 0.8755 2.9608 2 1 Median 1.2267 1.0628 7.6959 2 0 Median 0.84574 0.85235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101870000 49248000 52619000 33638000 15356000 18282000 35178000 16221000 18957000 33051000 17671000 15380000 0 0 0 0 0 0 0 0 0 28037 2225 29506 147507;147508;147509;147510;147511 148462;148463;148464;148465 148462 4 QVVQTPNTVLSTPFR TPLHESDFSGVTPQRQVVQTPNTVLSTPFR QVVQTPNTVLSTPFRTPSNGAEGLTPRSGT R Q V F R T 0 1 1 0 0 2 0 0 0 0 1 0 0 1 2 1 3 0 0 3 0 0 15 0 1685.9101 Q99459 Q99459 400 414 CDC5L Cell division cycle 5-like protein yes yes 2 4.6877E-07 89.403 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.82461 0.7956 6.6218 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72016 0.76687 5.2025 2 0 Median 0.96243 0.85037 NaN 1 0 Median 0.82461 0.87195 NaN 1 1 Median 0.88564 0.78318 NaN 1 0 Median 23440000 12969000 10470000 0 0 0 0 0 0 19910000 11012000 8898000 185430 125040 60387 3185300 1725200 1460000 158710 106700 52009 28038 3745 29507 147512;147513;147514;147515;147516 148466;148467;148468;148469;148470 148470 5 QVVTVVFER TKDNITNNTAAATVRQVVTVVFERMVAEDE AAATVRQVVTVVFERMVAEDERHRDIIEQP R Q V E R M 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 4 0 0 9 0 1075.6026 A0A286YFF8;Q7Z3U7;F8VZV1 A0A286YFF8 171 179 MON2 Protein MON2 homolog yes no 2 0.019275 40.002 By matching By MS/MS 1 1 1.001 0.90417 18.724 2 Median 1.0651 1.0322 NaN 1 0 Median 0.94083 0.79204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5854300 2911600 2942600 3843700 1834300 2009400 2010600 1077400 933200 0 0 0 0 0 0 0 0 0 0 0 0 28039 353 29508 147517;147518 148471 148471 1 QVYIPNYNKPNPNQISVNNVK QQKRLKAAEAESKLKQVYIPNYNKPNPNQI YNKPNPNQISVNNVKAGVVNGTGAPGQSPG K Q V V K A 0 0 6 0 0 2 0 0 0 2 0 2 0 0 3 1 0 0 2 3 0 0 21 1 2442.2656 E7ESY4;Q13330;H0Y4T7 E7ESY4 353 373 MTA1 Metastasis-associated protein MTA1 yes no 3 9.508E-12 64.723 By MS/MS By matching 1 1 0.64841 0.73389 48.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46948 0.52021 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89554 1.0353 NaN 1 0 Median NaN NaN NaN 0 0 Median 23718000 15080000 8638400 0 0 0 0 0 0 18072000 12000000 6071900 0 0 0 5646000 3079500 2566500 0 0 0 28040 888 29509 147519;147520 148472;148473 148472 2 QVYIPTYTKPNPNQIISVGSK QQKRLKAAEADSKLKQVYIPTYTKPNPNQI YTKPNPNQIISVGSKPGMNGAGFQKGLTCE K Q V S K P 0 0 2 0 0 2 0 1 0 3 0 2 0 0 3 2 2 0 2 2 0 0 21 1 2346.2583 O94776 O94776 333 353 MTA2 Metastasis-associated protein MTA2 yes yes 3 0.00016035 34.689 By MS/MS 1 0.53552 0.59988 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53552 0.59988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7466000 4870800 2595200 0 0 0 0 0 0 7466000 4870800 2595200 0 0 0 0 0 0 0 0 0 28041 1723 29510 147521 148474 148474 1 QVYMSLPQGEK TMTTSASSHLNKGIKQVYMSLPQGEKVQAM KGIKQVYMSLPQGEKVQAMYIWIDGTGEGL K Q V E K V 0 0 0 0 0 2 1 1 0 0 1 1 1 0 1 1 0 0 1 1 0 0 11 0 1278.6278 A0A2R8YDT1;P15104 A0A2R8YDT1 149 159 GLUL Glutamine synthetase yes no 2 0.00019593 75.294 By MS/MS 1 0.66442 0.61814 NaN 1 Median 0.66442 0.61814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9601900 6155100 3446800 9601900 6155100 3446800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28042 398 29511 147522 148475 148475 1 QVYVDKLAELK DTENWLYEDGEDQPKQVYVDKLAELKNLGQ DQPKQVYVDKLAELKNLGQPIKIRFQESEE K Q V L K N 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 0 0 0 1 2 0 0 11 1 1304.734 P34932;A0A087WYC1 P34932 669 679 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.0037615 85.377 By MS/MS 1 0.38782 0.40548 NaN 1 Median 0.38782 0.40548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15627000 10851000 4775400 15627000 10851000 4775400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28043 2230 29512 147523 148476 148476 1 QWDSVVLER TIELEPNRQFTLAKKQWDSVVLERIEQACD FTLAKKQWDSVVLERIEQACDPAWSADVAA K Q W E R I 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 0 2 0 0 9 0 1130.572 Q9BRX2 Q9BRX2 116 124 PELO Protein pelota homolog yes yes 2 0.024906 37.727 By MS/MS 1 4.4313 3.7951 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.4313 3.7951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7589700 2562900 5026800 0 0 0 0 0 0 0 0 0 7589700 2562900 5026800 0 0 0 0 0 0 28044 3805 29513 147524 148477 148477 1 QWDYYAR PGSAPSWPSLVDTSKQWDYYARREKDRDRE PSLVDTSKQWDYYARREKDRDRERDRDRER K Q W A R R 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 7 0 1000.4403 Q6UN15;H0Y8P7 Q6UN15 450 456 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2 0.036491 46.802 By MS/MS 1 1.0638 1.0894 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0638 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7352100 3336400 4015700 0 0 0 0 0 0 7352100 3336400 4015700 0 0 0 0 0 0 0 0 0 28045 3185 29514 147525 148478;148479 148478 2 QWELLLEK FASETIRTRLMELHRQWELLLEKMREKGIK RLMELHRQWELLLEKMREKGIKLLQAQKLV R Q W E K M 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 8 0 1057.5808 A0A0D9SF54;A0A0D9SFF6;Q13813 Q13813 130 137 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.042262 36.395 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.1131 1.0831 23.323 5 Median 1.7538 1.6592 NaN 1 0 Median 1.2131 1.0615 NaN 1 0 Median 0.97211 1.0831 NaN 1 0 Median 0.96943 0.87688 NaN 1 0 Median 1.1131 1.1544 NaN 1 0 Median NaN NaN NaN 0 0 Median 8276500 3896200 4380300 975120 375150 599980 2108300 880760 1227500 4375300 2236300 2138900 123400 59403 64001 694410 344570 349840 0 0 0 28046 264;2838 29515 147526;147527;147528;147529;147530 148480;148481 148481 2 QWGWTQGR FRRYNGGVGRCAQAKQWGWTQGRWPKKSAE GRCAQAKQWGWTQGRWPKKSAEFLLHMLKN K Q W G R W 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 8 0 1017.4781 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 75 82 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.0032257 100.19 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.219 1.1 1.5666 4 Median 1.1709 1.1137 NaN 1 0 Median 1.269 1.0733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0894 1.0968 NaN 1 0 Median 1.3634 1.1032 NaN 1 0 Median 73261000 35079000 38181000 51799000 25295000 26504000 3703000 1553900 2149100 0 0 0 0 0 0 15042000 7057300 7984900 2716900 1173800 1543100 28047 67 29516 147531;147532;147533;147534 148482;148483;148484;148485;148486 148484 5 QWLIDTLYAFNSGNVER LLMHPVLESLRNTDRQWLIDTLYAFNSGNV LIDTLYAFNSGNVERFQTLKTAWGQQPDLA R Q W E R F 1 1 2 1 0 1 1 1 0 1 2 0 0 1 0 1 1 1 1 1 0 0 17 0 2024.9956 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 231 247 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 4.6064E-12 127.37 By matching By MS/MS By matching 1 1 1 1.3972 1.4038 18.478 3 Median 1.3972 1.4038 NaN 1 0 Median 1.2223 1.0596 NaN 1 0 Median 1.4787 1.501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4558700 2055300 2503400 137060 47878 89181 4024900 1830200 2194700 396710 177220 219490 0 0 0 0 0 0 0 0 0 28048 4345 29517 147535;147536;147537 148487;148488 148487 2 QWLQEIDR VVYDVTDQESYANVKQWLQEIDRYASENVN ESYANVKQWLQEIDRYASENVNKLLVGNKS K Q W D R Y 0 1 0 1 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 8 0 1086.5458 Q9H0U4;E9PLD0;Q92928;E7END7;P62820 Q9H0U4 101 108 RAB1B;RAB1C;RAB1A Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-1A no no 2 0.0024453 120.46 By MS/MS By MS/MS 2 2 1.1838 1.0208 8.393 4 Median 1.0558 1.0311 13.905 2 0 Median 1.2171 1.0208 4.1189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86904000 42355000 44549000 74026000 36250000 37776000 12878000 6104300 6773300 0 0 0 0 0 0 0 0 0 0 0 0 28049 3929;863 29518 147538;147539;147540;147541 148489;148490;148491;148492;148493;148494 148489 6 QWLQEIDRYASENVNK VVYDVTDQESYANVKQWLQEIDRYASENVN WLQEIDRYASENVNKLLVGNKSDLTTKKVV K Q W N K L 1 1 2 1 0 2 2 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 16 1 1991.9701 Q9H0U4;E9PLD0;E7END7;P62820 Q9H0U4 101 116 RAB1B;RAB1A Ras-related protein Rab-1B;Ras-related protein Rab-1A no no 2;3 5.8781E-09 99.5 By MS/MS 2 0.9215 0.96145 22.053 2 Median 0.9215 0.96145 22.053 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37178000 17345000 19833000 37178000 17345000 19833000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28050 3929;863 29519 147542;147543 148495;148496 148495 2 QWQSLIEESAR TGFDQHEQKFTGLPRQWQSLIEESARRPKP GLPRQWQSLIEESARRPKPLVDPACITSIQ R Q W A R R 1 1 0 0 0 2 2 0 0 1 1 0 0 0 0 2 0 1 0 0 0 0 11 0 1345.6626 O96013;M0R3G6;M0R2X4;M0R0L9 O96013 38 48 PAK4 Serine/threonine-protein kinase PAK 4 yes no 2 0.000181 86.624 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28051 1807 29520 147544 148497 148497 1 QWYESHYALPLGR LVKNCIVLIDSTPYRQWYESHYALPLGRKK YRQWYESHYALPLGRKKGAKLTPEEEEILN R Q W G R K 1 1 0 0 0 1 1 1 1 0 2 0 0 0 1 1 0 1 2 0 0 0 13 0 1618.7892 Q5JR95;P62241 Q5JR95 91 103 RPS8 40S ribosomal protein S8 yes no 2;3 5.9223E-05 86.624 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1.2409 1.1003 16.252 7 Median 1.1303 1.1073 30.45 2 0 Median 1.0605 0.89688 NaN 1 0 Median 1.2453 1.1818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1627 1.1744 9.2084 2 0 Median 1.2962 1.0523 NaN 1 0 Median 243980000 123910000 120080000 175370000 91718000 83656000 10146000 4785700 5360500 2829400 1394900 1434400 0 0 0 54152000 25348000 28804000 1483500 660890 822570 28052 2573 29521 147545;147546;147547;147548;147549;147550;147551 148498;148499;148500;148501;148502;148503;148504;148505;148506 148502 9 QYAGLDHELAFSR QSFVFQREEIAQLARQYAGLDHELAFSRLI ARQYAGLDHELAFSRLIVELRRLHPGHVLP R Q Y S R L 2 1 0 1 0 1 1 1 1 0 2 0 0 1 0 1 0 0 1 0 0 0 13 0 1505.7263 Q99720 Q99720 48 60 SIGMAR1 Sigma non-opioid intracellular receptor 1 yes yes 2;3 0.00038646 64.878 By MS/MS By MS/MS 3 2 1.0041 0.85369 30.408 5 Median 1.0692 0.99821 27.877 3 0 Plateau 1.2725 1.0789 33.115 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35466000 17449000 18017000 29821000 15396000 14425000 5644900 2053000 3591800 0 0 0 0 0 0 0 0 0 0 0 0 28053 3765 29522 147552;147553;147554;147555;147556 148507;148508;148509 148507 3 QYASLTGTQALPPLFSLGYHQSR DVFLLLGPSISDVFRQYASLTGTQALPPLF QALPPLFSLGYHQSRWNYRDEADVLEVDQG R Q Y S R W 2 1 0 0 0 3 0 2 1 0 4 0 0 1 2 3 2 0 2 0 0 0 23 0 2534.2918 E9PKU7;Q14697;F5H6X6 Q14697 378 400 GANAB Neutral alpha-glucosidase AB no no 3 0.060572 7.0315 By MS/MS 2 1.0379 0.88355 20.022 2 Median NaN NaN NaN 0 0 Median 1.0379 0.88355 20.022 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14556000 7507800 7048600 0 0 0 14556000 7507800 7048600 0 0 0 0 0 0 0 0 0 0 0 0 28054 2896;951 29523 147557;147558 148510 148510 1 QYASYEFVQR DALLNQLKSFPARLRQYASYEFVQRLLKGY PARLRQYASYEFVQRLLKGYMKINMLVIEL R Q Y Q R L 1 1 0 0 0 2 1 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 10 0 1289.6041 Q14204 Q14204 1379 1388 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 2.4396E-05 145.16 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1.1117 1.0415 14.467 6 Median 1.0148 0.95975 NaN 1 0 Median 1.3128 1.0818 30.577 2 1 Median 1.0004 1.0523 NaN 1 0 Median 1.2134 1.0568 3.5322 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36218000 16326000 19893000 2496900 1133500 1363400 11072000 4546200 6526200 16504000 8047000 8457100 6145000 2599100 3546000 0 0 0 0 0 0 28055 2865 29524 147559;147560;147561;147562;147563;147564 148511;148512;148513;148514;148515;148516 148512 6 QYDAYGSAGFDPGASGSQHSYWK LAEAYEVLSDEVKRKQYDAYGSAGFDPGAS GFDPGASGSQHSYWKGGPTVDPEELFRKIF K Q Y W K G 3 0 0 2 0 2 0 4 1 0 0 1 0 1 1 4 0 1 3 0 0 0 23 0 2478.0513 Q96EY1 Q96EY1 153 175 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 3 6.0875E-05 33.45 By MS/MS By matching 1 1 0.9113 0.87556 19.182 2 Median 1.0734 1.0027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77365 0.7645 NaN 1 0 Median NaN NaN NaN 0 0 Median 7674600 3471800 4202800 6036500 2638900 3397600 0 0 0 0 0 0 0 0 0 1638100 832860 805220 0 0 0 28056 3643 29525 147565;147566 148517 148517 1 QYDGIFYEFR TLAPQMCSSFATGPRQYDGIFYEFRSYYLK ATGPRQYDGIFYEFRSYYLKPSKMNEFLEN R Q Y F R S 0 1 0 1 0 1 1 1 0 1 0 0 0 2 0 0 0 0 2 0 0 0 10 0 1336.6088 Q9UFN0 Q9UFN0 31 40 NIPSNAP3A Protein NipSnap homolog 3A yes yes 2 0.00036818 90.629 By MS/MS By MS/MS 1 1 1.3087 1.176 11.086 2 Median 1.1467 1.0873 NaN 1 0 Median 1.4935 1.2719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12443000 5814500 6628100 11386000 5397700 5988500 1056400 416780 639640 0 0 0 0 0 0 0 0 0 0 0 0 28057 4259 29526 147567;147568 148518;148519;148520 148519 3 QYDQEIENLEK QIFRRFEQEMMSKKRQYDQEIENLEKQQKQ SKKRQYDQEIENLEKQQKQTIERLEQEHTN R Q Y E K Q 0 0 1 1 0 2 3 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1407.6518 Q9H2G2 Q9H2G2 873 883 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.00021918 74.162 By MS/MS 1 1.8857 1.8189 NaN 1 Median 1.8857 1.8189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7313700 3025200 4288500 7313700 3025200 4288500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28058 3942 29527 147569 148521;148522 148522 2 QYDSFTFTASK LEDPDGKVLYKEMKKQYDSFTFTASKNGTY EMKKQYDSFTFTASKNGTYKFCFSNEFSTF K Q Y S K N 1 0 0 1 0 1 0 0 0 0 0 1 0 2 0 2 2 0 1 0 0 0 11 0 1293.5877 A0A0A6YYA0;Q9Y3B3 A0A0A6YYA0 92 102 TMED7-TICAM2;TMED7 Transmembrane emp24 domain-containing protein 7 yes no 2 0.018812 35.511 By MS/MS 2 1.042 0.97447 9.6509 2 Median 1.042 0.97447 9.6509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15814000 7496100 8318200 15814000 7496100 8318200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28059 201 29528 147570;147571 148523 148523 1 QYFEEIQR ERLKREERRREELYRQYFEEIQRRFDAERP RREELYRQYFEEIQRRFDAERPVDCSVIVV R Q Y Q R R 0 1 0 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 8 0 1111.5298 Q9HCD5;Q5JY17 Q9HCD5 183 190 NCOA5 Nuclear receptor coactivator 5 yes no 2 0.0082924 64.757 By MS/MS By MS/MS 1 2 1.1756 1.2175 29.741 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1756 1.2175 29.741 2 0 Median NaN NaN NaN 0 0 Median 5458000 2379800 3078200 0 0 0 0 0 0 0 0 0 0 0 0 5458000 2379800 3078200 0 0 0 28060 4028 29529 147572;147573;147574 148524;148525 148525 2 QYFHQLEK SMSDSEVQAKEEHLRQYFHQLEKMNVKIPE AKEEHLRQYFHQLEKMNVKIPENIYRGIRN R Q Y E K M 0 0 0 0 0 2 1 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 1091.54 P42704 P42704 606 613 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0035109 91.783 By MS/MS 2 1.6149 1.3714 10.329 2 Median NaN NaN NaN 0 0 Median 1.6149 1.3714 10.329 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19108000 7239400 11869000 0 0 0 19108000 7239400 11869000 0 0 0 0 0 0 0 0 0 0 0 0 28061 2315 29530 147575;147576 148526;148527 148526 2 QYFQTAEK KPSEGTTLRVEDLVKQYFQTAEKNVQLSLL RVEDLVKQYFQTAEKNVQLSLLTERGMGEA K Q Y E K N 1 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 8 0 1013.4818 P49959;F8W7U8 P49959 435 442 MRE11A Double-strand break repair protein MRE11A yes no 2 0.019541 47.082 By MS/MS 1 1.0605 1.126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0605 1.126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2426900 1305300 1121600 0 0 0 0 0 0 2426900 1305300 1121600 0 0 0 0 0 0 0 0 0 28062 2407 29531 147577 148528 148528 1 QYGNEVFLAK IDEVSSLLRTSIMSKQYGNEVFLAKLIAQA SIMSKQYGNEVFLAKLIAQACVSIFPDSGH K Q Y A K L 1 0 1 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 10 0 1167.5924 P50990;H7C4C8 P50990 172 181 CCT8 T-complex protein 1 subunit theta yes no 2 0.0049654 51.346 By MS/MS By MS/MS By matching 2 1 1 1.3487 1.2629 10.209 4 Median 1.3597 1.2629 8.9354 2 0 Median 1.3235 1.1192 NaN 1 0 Median 1.3744 1.3876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70432000 29526000 40906000 40466000 16710000 23756000 25583000 11093000 14490000 4382500 1723000 2659500 0 0 0 0 0 0 0 0 0 28063 2423 29532 147578;147579;147580;147581 148529;148530;148531;148532 148531 4 QYIATIHSR ERDDMIHQLPLLTEKQYIATIHSRLQDSQL PLLTEKQYIATIHSRLQDSQLWKLPGLQAT K Q Y S R L 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 9 0 1087.5774 Q92621 Q92621 305 313 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.020328 39.022 By MS/MS 1 1.0374 1.1484 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0374 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718100 1833300 1884800 0 0 0 0 0 0 3718100 1833300 1884800 0 0 0 0 0 0 0 0 0 28064 3547 29533 147582 148533 148533 1 QYIEFVADR ALPVKLIGMNCTLMKQYIEFVADRLMLELG NCTLMKQYIEFVADRLMLELGFSKVFRVEN K Q Y D R L 1 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 9 0 1139.5611 P31350;A0A286YFD6;C9JXC1;Q7LG56;H0YAV1;A0A0C4DGZ6 P31350 322 330 RRM2;RRM2B Ribonucleoside-diphosphate reductase subunit M2;Ribonucleoside-diphosphate reductase subunit M2 B no no 2 0.0057315 56.729 By MS/MS By matching 1 1 1.7482 1.6101 25.655 2 Median 1.3541 1.343 NaN 1 0 Median 2.2571 1.9304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8329400 3189800 5139500 6454000 2617700 3836300 1875400 572160 1303200 0 0 0 0 0 0 0 0 0 0 0 0 28065 2203;1168 29534 147583;147584 148534;148535 148534 2 QYIGPPSAAAIFK TEKIDVAFVDRADIKQYIGPPSAAAIFKIY IKQYIGPPSAAAIFKIYLSCLEELMKCQII K Q Y F K I 3 0 0 0 0 1 0 1 0 2 0 1 0 1 2 1 0 0 1 0 0 0 13 0 1361.7343 Q15645 Q15645 317 329 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.060641 24.232 By MS/MS By matching By matching By matching 1 1 2 1 0.89376 0.79757 63.55 5 Median 0.71929 0.6897 NaN 1 0 Median 1.0878 0.94613 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63346 0.54724 117.79 2 0 Median NaN NaN NaN 0 0 Median 0.89376 0.79757 NaN 1 0 Median 4567100 2478800 2088400 2862300 1659600 1202700 1323400 596790 726560 0 0 0 267660 169510 98145 0 0 0 113850 52869 60979 28066 2960 29535 147585;147586;147587;147588;147589 148536 148536 1 QYINAIKDYELQLVTYK ERHGEKVEECQRFAKQYINAIKDYELQLVT INAIKDYELQLVTYKAQLEPVASPAKKPKV K Q Y Y K A 1 0 1 1 0 2 1 0 0 2 2 2 0 0 0 0 1 0 3 1 0 0 17 1 2101.1096 Q15149;H0YDN1 Q15149 1411 1427 PLEC Plectin yes no 3 0.001589 30.536 By MS/MS By matching 1 1 1.4108 1.4326 3.0833 2 Median 1.2899 1.4017 NaN 1 0 Median 1.543 1.4642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5231700 2145700 3085900 4641100 1885700 2755400 590570 260030 330550 0 0 0 0 0 0 0 0 0 0 0 0 28067 2933 29536 147590;147591 148537;148538 148538 2 QYLDQQQYQSALFWADK ______________________________ LDQQQYQSALFWADKVASLSREEPQDIYWL R Q Y D K V 2 0 0 2 0 5 0 0 0 0 2 1 0 1 0 1 0 1 2 0 0 0 17 0 2131.0011 Q13042;A0A3B3ISD2 Q13042 12 28 CDC16 Cell division cycle protein 16 homolog yes no 2 0.0044031 31.639 By MS/MS 1 0.80654 0.85603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80654 0.85603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2271300 1184000 1087200 0 0 0 0 0 0 2271300 1184000 1087200 0 0 0 0 0 0 0 0 0 28068 2779 29537 147592 148539 148539 1 QYLPHVAR GTAEDFADQFLRVTKQYLPHVARLCLISTF QFLRVTKQYLPHVARLCLISTFLEDGIRMW K Q Y A R L 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 8 0 982.53485 Q5T8U5;O15260 Q5T8U5 23 30 SURF4 Surfeit locus protein 4 yes no 2 0.0037831 85.359 By MS/MS By MS/MS 2 2 1.1505 1.0282 12.101 4 Median 1.0105 1.0117 13.662 2 0 Median 1.2536 1.0569 15.283 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23523000 10725000 12798000 8384100 4000200 4383900 15139000 6724600 8414500 0 0 0 0 0 0 0 0 0 0 0 0 28069 1534 29538 147593;147594;147595;147596 148540;148541 148541 2 QYLVFHDGDSVVFAGPAGNSVETR TQRDLERMENIRFCRQYLVFHDGDSVVFAG SVVFAGPAGNSVETRGELLSRESPSGTMKA R Q Y T R G 2 1 1 2 0 1 1 3 1 0 1 0 0 2 1 2 1 0 1 4 0 0 24 0 2564.2296 C9JIF9;P13798;H7C393 C9JIF9 66 89 APEH Acylamino-acid-releasing enzyme yes no 3 4.1806E-12 56.72 By MS/MS 1 0.76881 0.73997 NaN 1 Median 0.76881 0.73997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4221100 2305100 1915900 4221100 2305100 1915900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28070 699 29539 147597 148542 148542 1 QYMFSSLK ECLVYVQLPFMEDLRQYMFSSLKNSKKYAP PFMEDLRQYMFSSLKNSKKYAPTEAQLNAV R Q Y L K N 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 8 0 1002.4845 P13010 P13010 432 439 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.019658 46.994 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.2301 1.1452 82.958 5 Median 1.2679 1.1452 NaN 1 0 Median 1.4808 1.2946 NaN 1 0 Median 1.1516 1.2007 17.068 2 0 Median 0.20055 0.19154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76729000 34050000 42679000 13830000 5982000 7847600 12782000 5086000 7695700 49093000 22198000 26895000 1024400 783840 240530 0 0 0 0 0 0 28071 1986 29540 147598;147599;147600;147601;147602 148543;148544;148545;148546 148543 4 QYNGVPLDGRPMNIQLVTSQIDAQR DVHFERKADALKAMKQYNGVPLDGRPMNIQ PMNIQLVTSQIDAQRRPAQSVNRGGMTRNR K Q Y Q R R 1 2 2 2 0 4 0 2 0 2 2 0 1 0 2 1 1 0 1 2 0 0 25 1 2812.429 Q86V81;E9PB61 Q86V81 165 189 ALYREF THO complex subunit 4 yes no 3 4.2322E-09 49.638 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 2 0.75562 0.80098 20.871 6 Median 0.78683 0.84707 NaN 1 0 Median 0.56412 0.51924 NaN 1 0 Median 0.72566 0.75741 NaN 1 0 Median 0.99457 0.92812 NaN 1 0 Median 0.74671 0.80339 12.248 2 0 Median NaN NaN NaN 0 0 Median 34408000 19182000 15227000 2993300 1768000 1225300 341840 190100 151740 21219000 11953000 9265900 653580 302450 351130 9200700 4968100 4232600 0 0 0 28072 3286 29541 147603;147604;147605;147606;147607;147608 148547;148548;148549;148550;148551;148552;148553 148550 7 QYPISLVLAPTR ALRAMKENGRYGRRKQYPISLVLAPTRELA RRKQYPISLVLAPTRELAVQIYEEARKFSY K Q Y T R E 1 1 0 0 0 1 0 0 0 1 2 0 0 0 2 1 1 0 1 1 0 0 12 0 1356.7765 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 264 275 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00020862 85.355 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.76744 0.71041 17.208 6 Median 0.68908 0.67915 5.495 3 2 Median 0.79481 0.68761 NaN 1 0 Median 0.96802 0.98043 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88003 0.92867 NaN 1 0 Median NaN NaN NaN 0 0 Median 45713000 24216000 21497000 11762000 6710500 5052000 10582000 5700000 4881700 19553000 9977000 9576100 0 0 0 3815900 1828200 1987600 0 0 0 28073 263 29542 147609;147610;147611;147612;147613;147614 148554;148555;148556;148557;148558;148559;148560;148561;148562;148563 148561 10 QYQIDAAIVR VEEQASTTERVFQDRQYQIDAAIVRIMKMR VFQDRQYQIDAAIVRIMKMRKTLSHNLLVS R Q Y V R I 2 1 0 1 0 2 0 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 10 0 1175.6299 Q13620;K4DI93;Q13619;A0A0A0MR50 Q13620 847 856 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 2 0.0011713 67.897 By MS/MS By matching By matching By matching 1 1 1 1 1.2302 1.2 11.839 4 Median 1.1707 1.109 NaN 1 0 Median 1.5619 1.3534 NaN 1 0 Median 1.2192 1.2986 NaN 1 0 Median 1.2412 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18488000 8183000 10305000 7423500 3472900 3950600 3918800 1511000 2407800 6495600 2925900 3569700 649910 273110 376800 0 0 0 0 0 0 28074 1358;2832 29543 147615;147616;147617;147618 148564;148565 148565 2 QYQLLFTQGSGENK SPFMNKFFPASFPNRQYQLLFTQGSGENKE RQYQLLFTQGSGENKEEIINYEFDTKDLVC R Q Y N K E 0 0 1 0 0 3 1 2 0 0 2 1 0 1 0 1 1 0 1 0 0 0 14 0 1611.7893 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72 A0A3B3IUB5 180 193 HM13 Minor histocompatibility antigen H13 yes no 2 0.010484 33.886 By MS/MS 1 1.213 1.0574 NaN 1 Median NaN NaN NaN 0 0 Median 1.213 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3828200 1759000 2069200 0 0 0 3828200 1759000 2069200 0 0 0 0 0 0 0 0 0 0 0 0 28075 444 29544 147619 148566;148567 148566 2 QYSLQNWEAR QEIAVVYFRDGYMPRQYSLQNWEARLLLER GYMPRQYSLQNWEARLLLERSHAAKCPDIA R Q Y A R L 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 10 0 1293.6102 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y6Q7 A0A2R8Y430 274 283 GSS Glutathione synthetase yes no 2 0.00094065 69.954 By MS/MS By matching 1 1 1.2485 1.1392 19.074 2 Median 1.0302 0.99549 NaN 1 0 Median 1.5132 1.3037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10036000 4551800 5484500 7829800 3688900 4140900 2206600 862980 1343600 0 0 0 0 0 0 0 0 0 0 0 0 28076 358 29545 147620;147621 148568 148568 1 QYTSPEEIDAQLQAEK MPKGGRKGGHKGRARQYTSPEEIDAQLQAE YTSPEEIDAQLQAEKQKAREEEEQKEGGDG R Q Y E K Q 2 0 0 1 0 3 3 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 16 0 1848.8741 Q13442;F8WBW6 Q13442 16 31 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes no 2 9.0528E-05 73.466 By MS/MS By matching By matching 1 1 1 1.0942 0.8987 10.863 3 Median 0.96423 0.8987 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1408 1.0845 NaN 1 0 Median 1.0942 0.89825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18726000 8931400 9794700 14702000 7341300 7361200 0 0 0 3657800 1426100 2231700 365800 164000 201800 0 0 0 0 0 0 28077 2818 29546 147622;147623;147624 148569;148570 148569 2 QYYIGDIHPSDLKPESGSK FEDVGHSSDAREMLKQYYIGDIHPSDLKPE GDIHPSDLKPESGSKDPSKNDTCKRRCSLR K Q Y S K D 0 0 0 2 0 1 1 2 1 2 1 2 0 0 2 3 0 0 2 0 0 0 19 1 2133.0378 H3BUX2;A0A499FJ32;O43169 H3BUX2 89 107 CYB5B Cytochrome b5 type B yes no 3;4 3.1472E-05 44.382 By MS/MS By MS/MS 4 1 0.78085 0.79444 9.0698 5 Median 0.77824 0.78384 8.6589 4 0 Median 1.0023 0.88633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39315000 20083000 19233000 35781000 18276000 17506000 3534300 1807300 1727000 0 0 0 0 0 0 0 0 0 0 0 0 28078 476 29547 147625;147626;147627;147628;147629 148571;148572;148573;148574 148571 4 QYYTLLNQAPDMLHR MEKPSPLLVGREFVRQYYTLLNQAPDMLHR QYYTLLNQAPDMLHRFYGKNSSYVHGGLDS R Q Y H R F 1 1 1 1 0 2 0 0 1 0 3 0 1 0 1 0 1 0 2 0 0 0 15 0 1861.9145 Q13283;E5RIF8;E5RH42;E5RJU8;E5RI46;E5RH00 Q13283 18 32 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 3 0.00022887 45.54 By MS/MS By matching By MS/MS 1 3 1 0.92338 0.83825 12.041 5 Median 0.88863 0.83825 NaN 1 0 Median 0.92338 0.79816 11.779 3 0 Median 1.0296 1.0263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63828000 32567000 31262000 26880000 13535000 13345000 21406000 11992000 9413900 15543000 7039800 8502700 0 0 0 0 0 0 0 0 0 28079 2803 29548 147630;147631;147632;147633;147634 148575;148576;148577;148578 148576 4 RAAAASAAEAGIATTGTEDSDDALLK VSMEEQRQRQEEEARRAAAASAAEAGIATT IATTGTEDSDDALLKMTISQQEFGRTGLPD R R A L K M 9 1 0 3 0 0 2 2 0 1 2 1 0 0 0 2 3 0 0 0 0 0 26 1 2475.2089 P55036;H0Y3Y9 P55036 237 262 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes no 3 1.7843E-05 34.418 By MS/MS By matching 1 1 1.101 1.0782 0.45559 2 Median 1.0766 1.0747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1261 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8634100 3900300 4733900 5793200 2620700 3172500 0 0 0 0 0 0 2841000 1279600 1561300 0 0 0 0 0 0 28080 2491 29549 147635;147636 148579 148579 1 RAADALEEQQR ESLKVTKGSLEEEKRRAADALEEQQRCISE EEKRRAADALEEQQRCISELKAETRSLVEQ R R A Q R C 3 2 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 1 1285.6375 A0A087WY61;F5H4J1;Q14980 Q14980 724 734 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.020406 36.847 By MS/MS By MS/MS 1 2 1.0404 1.2162 21.395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.12 1.4148 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.96641 1.0454 NaN 1 1 Median NaN NaN NaN 0 0 Median 1475500 758680 716790 0 0 0 0 0 0 618210 334720 283490 0 0 0 857270 423970 433300 0 0 0 28081 2905;77 29550 147637;147638;147639 148580;148581;148582 148581 3 RAAEDDEDDDVDTKK EDGDEDEEAESATGKRAAEDDEDDDVDTKK RAAEDDEDDDVDTKKQKTDEDD________ K R A K K Q 2 1 0 6 0 0 2 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 15 2 1720.7388 B8ZZQ6;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 86 100 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 3 0.0097874 25.319 By matching By MS/MS 1 1 1.0201 1.0579 0.19226 2 Median 1.0078 1.0594 NaN 1 0 Median 1.0325 1.0565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 953470 405180 548290 470720 202050 268670 482750 203130 279620 0 0 0 0 0 0 0 0 0 0 0 0 28082 650 29551 147640;147641 148583 148583 1 RAAEIYGVTHTR VEPAQQYDMFNIYIKRAAEIYGVTHTRGIY YIKRAAEIYGVTHTRGIYQKAIEVLSDEHA K R A T R G 2 2 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 0 1 1 0 0 12 1 1372.7211 Q9HCS7 Q9HCS7 638 649 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 3 0.04741 26.627 By MS/MS 1 1.3112 1.5151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3112 1.5151 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 415730 187420 228310 0 0 0 0 0 0 415730 187420 228310 0 0 0 0 0 0 0 0 0 28083 4032 29552 147642 148584 148584 1 RAAGVVLEMIR PRQASQGMVGQLAARRAAGVVLEMIREGKI LAARRAAGVVLEMIREGKIAGRAVLIAGQP R R A I R E 2 2 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 2 0 0 11 1 1213.6965 Q9Y230;M0R0Y3;X6R2L4;M0QXI6 Q9Y230 54 64 RUVBL2 RuvB-like 2 yes no 2;3 0.00019271 86.898 By MS/MS By MS/MS By MS/MS 2 2 3 1.2284 1.1691 14.558 7 Median 1.3893 1.4029 13.089 2 1 Median NaN NaN NaN 0 0 Median 1.1441 1.2388 10.052 2 0 Median 1.2373 1.156 8.6719 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57812000 24876000 32936000 24667000 9332700 15334000 0 0 0 22907000 11096000 11811000 10238000 4447900 5790100 0 0 0 0 0 0 28084 4368 29553 147643;147644;147645;147646;147647;147648;147649 148585;148586;148587;148588;148589;148590;148591 148588 7 RAASAATAAPTATPAAQESGTIPK GRPREALSTNECKARRAASAATAAPTATPA PTATPAAQESGTIPKKRQEVMKWNGWGYND R R A P K K 9 1 0 0 0 1 1 1 0 1 0 1 0 0 3 2 4 0 0 0 0 0 24 1 2238.1604 O00116;B8ZZ81 O00116 62 85 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 3 5.9108E-24 102.16 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.64105 0.61258 17.502 4 Median 0.67198 0.67416 NaN 1 0 Median 0.73129 0.66922 NaN 1 0 Median 0.43885 0.46583 NaN 1 1 Median 0.61155 0.56073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24983000 15640000 9343500 10242000 6107900 4133600 4480900 2643200 1837600 6375100 4533500 1841500 3885600 2354800 1530800 0 0 0 0 0 0 28085 1439 29554 147650;147651;147652;147653 148592;148593;148594;148595;148596;148597;148598 148595 7 RAATLAQELEK NQVKKYHRLKEEASKRAATLAQELEKFNRD EASKRAATLAQELEKFNRDQKADQDRLDLE K R A E K F 3 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 1 1228.6776 Q14683;G8JLG1 Q14683 385 395 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00026806 94.692 By matching By MS/MS By MS/MS 1 1 1 0.98612 1.1179 27.817 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3632 1.3161 NaN 1 0 Median 0.98612 1.1179 NaN 1 0 Median 0.86146 0.76524 NaN 1 0 Median 10966000 5624000 5342100 0 0 0 0 0 0 0 0 0 562850 256380 306470 7899300 4005500 3893800 2504000 1362200 1141800 28086 2889 29555 147654;147655;147656 148599;148600;148601 148599 3 RACYGVLR AESLRYKLLGGLAVRRACYGVLRFIMESGA LGGLAVRRACYGVLRFIMESGAKGCEVVVS R R A L R F 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 1 993.51782 P23396;E9PL09 P23396 117 124 RPS3 40S ribosomal protein S3 yes no 2 0.063498 35.88 By MS/MS 2 1.0272 0.90821 17.949 2 Median NaN NaN NaN 0 0 Median 1.0272 0.90821 17.949 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229500 2153900 2075600 0 0 0 4229500 2153900 2075600 0 0 0 0 0 0 0 0 0 0 0 0 28087 2112 29556 147657;147658 148602 148602 1 RADLNQGIGEPQSPSR ALGSADCELSAKLLRRADLNQGIGEPQSPS ADLNQGIGEPQSPSRRVFNPYTEFKEFSRK R R A S R R 1 2 1 1 0 2 1 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 16 1 1723.8602 Q96C19 Q96C19 62 77 EFHD2 EF-hand domain-containing protein D2 yes yes 3 3.153E-05 64.454 By MS/MS By MS/MS By MS/MS 1 2 1 0.97492 0.8824 8.7735 4 Median 0.79873 0.85989 NaN 1 0 Median 0.97492 0.86197 6.9677 2 0 Median NaN NaN NaN 0 0 Median 1.0787 1.0066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15692000 8804800 6887500 5825200 3823000 2002200 7388500 3804400 3584100 0 0 0 2478500 1177300 1301200 0 0 0 0 0 0 28088 3613 29557 147659;147660;147661;147662 148603;148604;148605;148606;148607;148608 148605 5 RADPAELR ______________________________ AKVALTKRADPAELRTIFLKYASIEKNGEF K R A L R T 2 2 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 8 1 926.49338 Q9UJS0;R4GN64 Q9UJS0 11 18 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 2 0.012153 62.546 By matching By MS/MS 1 1 0.84115 0.79567 18.485 2 Median 0.70865 0.69818 NaN 1 0 Median 0.99843 0.90678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371700 1781600 1590100 785560 473930 311640 2586200 1307700 1278500 0 0 0 0 0 0 0 0 0 0 0 0 28089 4297 29558 147663;147664 148609;148610 148609 2 RADVLAFPSSGFTDLAEIVSR KMLTDRRSTDLNESRRADVLAFPSSGFTDL FPSSGFTDLAEIVSRIEPPTSYVSDGCADG R R A S R I 3 2 0 2 0 0 1 1 0 1 2 0 0 2 1 3 1 0 0 2 0 0 21 1 2250.1644 A0A384DVU0;Q8IY17 A0A384DVU0 1270 1290 PNPLA6 Neuropathy target esterase yes no 3 0.051446 7.712 By MS/MS 2 1.0975 1.1963 8.9849 2 Median 1.0975 1.1963 8.9849 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 914050 424280 489770 914050 424280 489770 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28090 410 29559 147665;147666 148611;148612 148612 2 RAEDGSVIDYELIDQDAR SGDFRKLMVALAKGRRAEDGSVIDYELIDQ DGSVIDYELIDQDARDLYDAGVKRKGTDVP R R A A R D 2 2 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 18 1 2063.976 P07355;H0YN42;H0YMU9;H0YMD0;H0YM50;H0YNP5;H0YN28;H0YL33;H0YNA0 P07355 179 196 ANXA2 Annexin A2;Annexin yes no 2;3 4.6968E-65 238.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 2 7 2 2 1.1294 1.0875 11.082 23 Median 1.0558 1.1116 12.917 5 1 Median 1.1316 1.0279 7.5775 5 0 Median 1.0997 1.1478 2.7137 2 0 Median 1.2014 1.0636 6.4243 7 0 Median 0.88307 0.93951 27.116 2 0 Median 1.1929 1.0492 14.53 2 0 Median 440110000 194300000 245810000 116090000 52990000 63098000 37863000 17453000 20409000 232130000 100190000 131940000 47818000 20842000 26976000 4442600 2154600 2287900 1765500 668840 1096700 28091 1885 29560 147667;147668;147669;147670;147671;147672;147673;147674;147675;147676;147677;147678;147679;147680;147681;147682;147683;147684;147685;147686;147687;147688;147689;147690 148613;148614;148615;148616;148617;148618;148619;148620;148621;148622;148623;148624;148625;148626;148627;148628;148629;148630;148631;148632;148633;148634;148635;148636;148637;148638;148639;148640;148641;148642;148643;148644;148645 148617 33 RAEEADHEVLDQK AQEEIAFLKLQLQGKRAEEADHEVLDQKEM GKRAEEADHEVLDQKEMKQMEGEGIAPIKM K R A Q K E 2 1 0 2 0 1 3 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 13 1 1538.7325 Q14789;E7EU81;H0Y867 Q14789 584 596 GOLGB1 Golgin subfamily B member 1 yes no 3 0.0033088 34.179 By MS/MS By MS/MS 1 1 1.1618 1.1497 12.197 2 Median 1.0443 1.0547 NaN 1 0 Median 1.2924 1.2533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2154800 986990 1167800 762010 362610 399400 1392800 624380 768390 0 0 0 0 0 0 0 0 0 0 0 0 28092 2900 29561 147691;147692 148646;148647 148647 2 RAEEADHEVLDQKEMK AQEEIAFLKLQLQGKRAEEADHEVLDQKEM AEEADHEVLDQKEMKQMEGEGIAPIKMKVF K R A M K Q 2 1 0 2 0 1 4 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 16 2 1926.9105 Q14789;E7EU81;H0Y867 Q14789 584 599 GOLGB1 Golgin subfamily B member 1 yes no 4 0.027258 17.281 By MS/MS 1 1.171 1.2743 NaN 1 Median 1.171 1.2743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1024000 426620 597350 1024000 426620 597350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28093 2900 29562 147693 148648;148649 148648 2 RAEEELLLHDTR KAEIARRGVDVEAAKRAEEELLLHDTRCWL AAKRAEEELLLHDTRCWLNGGAMPEARHPR K R A T R C 1 2 0 1 0 0 3 0 1 0 3 0 0 0 0 0 1 0 0 0 0 0 12 1 1480.7634 Q9BZL4;K7EL81 Q9BZL4 199 210 PPP1R12C Protein phosphatase 1 regulatory subunit 12C yes no 3 0.010609 26.124 By MS/MS 1 1.0127 1.1702 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0127 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2533200 1404300 1128900 0 0 0 0 0 0 2533200 1404300 1128900 0 0 0 0 0 0 0 0 0 28094 1374 29563 147694 148650 148650 1 RAEEFLTASQEAL LPQDVYTIKALEAHKRAEEFLTASQEAL__ HKRAEEFLTASQEAL_______________ K R A A L - 3 1 0 0 0 1 3 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 13 1 1463.7256 E9PFR3;Q14738;H0Y8C4 E9PFR3 582 594 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.0007728 70.977 By MS/MS By matching 1 1 1.003 0.91455 7.4103 2 Median 0.90451 0.86786 NaN 1 0 Median 1.1122 0.96375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9915400 5794700 4120700 7522700 4537700 2985000 2392700 1257000 1135700 0 0 0 0 0 0 0 0 0 0 0 0 28095 920 29564 147695;147696 148651 148651 1 RAEEIWQQSVIGDYLAR GGEREERGKLPESPKRAEEIWQQSVIGDYL EEIWQQSVIGDYLARFKNDRVKALKAMEMT K R A A R F 2 2 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 17 1 2033.033 P17480;E9PKP7;E9PLT2 P17480 487 503 UBTF Nucleolar transcription factor 1 yes no 2;3 5.5157E-06 71.697 By matching By MS/MS By MS/MS 1 2 3 1.0376 1.0521 33.944 6 Plateau 0.49368 0.50617 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80204 0.91074 37.452 2 0 Median NaN NaN NaN 0 0 Median 0.99375 1.0603 4.6404 3 0 Median NaN NaN NaN 0 0 Median 25841000 12260000 13580000 874510 518270 356240 0 0 0 7129500 3413100 3716300 0 0 0 17837000 8329000 9507800 0 0 0 28096 2040 29565 147697;147698;147699;147700;147701;147702 148652;148653;148654;148655;148656 148655 5 RAEEQMLK RRITYYREKEEEEQRRAEEQMLKEREERER KEEEEQRRAEEQMLKEREERERAERAKREE R R A L K E 1 1 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 1 1003.5121 Q14152 Q14152 817 824 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.037194 42.109 By MS/MS 1 1.136 1.0879 NaN 1 Median NaN NaN NaN 0 0 Median 1.136 1.0879 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1265300 582680 682590 0 0 0 1265300 582680 682590 0 0 0 0 0 0 0 0 0 0 0 0 28097 2860 29566 147703 148657;148658 148657 2 RAEFTVETR AYGPGIEPTGNMVKKRAEFTVETRSAGQGE GNMVKKRAEFTVETRSAGQGEVLVYVEDPA K R A T R S 1 2 0 0 0 0 2 0 0 0 0 0 0 1 0 0 2 0 0 1 0 0 9 1 1107.5673 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 301 309 FLNA Filamin-A no no 2 0.0012426 93.111 By MS/MS By MS/MS By matching 2 3 2 1.0797 1.2012 10.379 6 Median 1.1409 1.2299 6.7902 2 0 Median 1.1666 1.1349 18.361 2 0 Median 0.97934 1.1539 9.129 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53543000 24799000 28743000 11074000 4590100 6484200 39477000 18608000 20869000 2991300 1600900 1390500 0 0 0 0 0 0 0 0 0 28098 2088;3120 29567 147704;147705;147706;147707;147708;147709;147710 148659;148660;148661;148662;148663;148664;148665;148666 148665 8 RAEILDEMR IFLNCFTDYKDQGPRRAEILDEMRAQLESW KDQGPRRAEILDEMRAQLESWWQDQVPSLS R R A M R A 1 2 0 1 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 1 1131.5706 Q9Y6K5 Q9Y6K5 493 501 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 0.00046074 103.7 By MS/MS 1 1.0172 0.98069 NaN 1 Median NaN NaN NaN 0 0 Median 1.0172 0.98069 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4393800 1984200 2409600 0 0 0 4393800 1984200 2409600 0 0 0 0 0 0 0 0 0 0 0 0 28099 4495 29568 147711 148667 148667 1 RAEILSEMR IFLDCFKSYVDQRARRAEILSEMRASLESW VDQRARRAEILSEMRASLESWWQNPVPGLR R R A M R A 1 2 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 9 1 1103.5757 Q9Y6K5;F8VWK9;F8VS35 Q9Y6K5 94 102 OAS3 2-5-oligoadenylate synthase 3 yes no 2 0.0012019 94.692 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3863 1.3922 32.114 3 Plateau 0.96349 1.0705 NaN 1 0 Median 1.5007 1.4468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67757 0.76147 NaN 1 0 Median NaN NaN NaN 0 0 Median 11071000 4747900 6323100 3424800 1634400 1790400 6799700 2649700 4150000 0 0 0 0 0 0 846510 463830 382680 0 0 0 28100 4495 29569 147712;147713;147714;147715 148668;148669;148670;148671 148669 4 RAEQEAQAPHWWR LERLEKYRSFDRYRRRAEQEAQAPHWWRTY RRRAEQEAQAPHWWRTYREYFGEKTDPKEK R R A W R T 3 2 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 13 1 1663.7968 Q96DV4 Q96DV4 60 72 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 3 0.011035 25.448 By matching By MS/MS 1 1 1.3299 1.3182 26.004 2 Median 1.0424 1.0968 NaN 1 0 Median 1.6965 1.5844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4085700 1753400 2332300 2139800 977120 1162600 1945900 776260 1169700 0 0 0 0 0 0 0 0 0 0 0 0 28101 3629 29570 147716;147717 148672 148672 1 RAESMLQQADK IDINMSGFNETDDLKRAESMLQQADKLGCR DDLKRAESMLQQADKLGCRQFVTPADVVSG K R A D K L 2 1 0 1 0 2 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 11 1 1275.6241 P13797;A0A0A0MSQ0;H7C4N2 P13797 336 346 PLS3 Plastin-3 yes no 2 0.00028161 111.06 By MS/MS By MS/MS 1 2 0.98564 0.92029 7.3049 3 Median 0.98564 0.99945 NaN 1 0 Median 0.97605 0.89169 4.4657 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15126000 7715600 7409900 2014100 991560 1022500 13111000 6724100 6387400 0 0 0 0 0 0 0 0 0 0 0 0 28102 1995 29571 147718;147719;147720 148673;148674;148675;148676 148676 4 RAEVSPMYGVQK LFSMFLLYDTQKVIKRAEVSPMYGVQKYDP VIKRAEVSPMYGVQKYDPINSMLSIYMDTL K R A Q K Y 1 1 0 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 1 2 0 0 12 1 1363.6918 Q9H3K2 Q9H3K2 301 312 GHITM Growth hormone-inducible transmembrane protein yes yes 2 1.0085E-05 120.06 By MS/MS By MS/MS 1 1 0.80053 0.77887 11.993 2 Median 0.7029 0.71554 NaN 1 0 Median 0.91171 0.8478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8245900 4242500 4003400 1559400 897870 661490 6686500 3344600 3341900 0 0 0 0 0 0 0 0 0 0 0 0 28103 3954 29572 147721;147722 148677;148678;148679 148678 3 RAFLIEEQK YGGSMCAKCVRDRIKRAFLIEEQKIVVKVL VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA K R A Q K I 1 1 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1132.6241 P49207 P49207 93 101 RPL34 60S ribosomal protein L34 yes yes 2 0.0010916 99.136 By MS/MS By MS/MS By matching 1 1 1 1.0304 0.82435 42.276 3 Median 0.45566 0.45079 NaN 1 0 Median 1.1535 1.018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0304 0.82435 NaN 1 0 Median 13750000 8341200 5408800 7430800 5537400 1893400 5954200 2613000 3341300 0 0 0 0 0 0 0 0 0 365020 190860 174160 28104 2373 29573 147723;147724;147725 148680;148681;148682 148682 3 RAFVPQLR PSVVKVSYKGSPAARRAFVPQLRSGKFNVL KGSPAARRAFVPQLRSGKFNVLLTTYEYII R R A L R S 1 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 1 985.58213 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 842 849 SMARCA4 Transcription activator BRG1 yes no 2 0.0034553 119.56 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 0.9323 0.94176 9.0622 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74551 0.94176 NaN 1 0 Median 1.1371 1.0297 NaN 1 0 Median 0.82016 0.88723 NaN 1 0 Median 1.0488 0.93426 14.571 2 0 Median 38774000 20376000 18398000 0 0 0 0 0 0 23625000 13056000 10569000 3979400 1943400 2036000 3693800 2085600 1608200 7475200 3291200 4184000 28105 366 29574 147726;147727;147728;147729;147730 148683;148684;148685;148686;148687;148688 148683 6 RAGDLLEDSPK DEPAKEKNEKGALKRRAGDLLEDSPKRPKE ALKRRAGDLLEDSPKRPKEAENPEGEEKEA R R A P K R 1 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 1 1199.6146 P51858 P51858 157 167 HDGF Hepatoma-derived growth factor yes yes 2 0.00020994 88.681 By matching By MS/MS By MS/MS By MS/MS 1 1 1 3 0.83133 0.77662 18.427 5 Median 0.5061 0.51851 NaN 1 0 Median 0.85924 0.80193 NaN 1 0 Median 0.71546 0.77662 NaN 1 0 Median 0.85451 0.77356 1.9918 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20969000 10806000 10164000 681310 367170 314140 504450 280380 224060 10340000 5406800 4932800 9443800 4751200 4692600 0 0 0 0 0 0 28106 2444 29575 147731;147732;147733;147734;147735;147736 148689;148690;148691;148692;148693;148694;148695;148696 148694 8 RAGELTEDEVER YAHVVLRKADIDLTKRAGELTEDEVERVIT LTKRAGELTEDEVERVITIMQNPRQYKIPD K R A E R V 1 2 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 1 1402.6688 P62269 P62269 55 66 RPS18 40S ribosomal protein S18 yes yes 2;3 0.00014182 72.089 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 1 2 1.1544 1.0771 15.762 9 Median 1.1228 1.1769 5.6212 2 0 Median 1.1156 1.0206 4.8308 2 0 Median 0.97423 1.058 24.615 2 1 Median NaN NaN NaN 0 0 Median 1.2909 1.4508 NaN 1 0 Median 1.1459 0.99504 11.21 2 0 Median 60707000 28223000 32483000 36814000 17133000 19681000 16952000 7826500 9126000 4993100 2397000 2596100 0 0 0 758610 345140 413470 1188900 521660 667250 28107 2578 29576 147737;147738;147739;147740;147741;147742;147743;147744;147745 148697;148698;148699;148700;148701;148702;148703;148704;148705;148706;148707;148708 148704 12 RAHLTVGQAAAGGSGNLLTER LREAGPSVAVDSSGRRAHLTVGQAAAGGSG GQAAAGGSGNLLTERSTFTDSQLGNADMEM R R A E R S 4 2 1 0 0 1 1 4 1 0 3 0 0 0 0 1 2 0 0 1 0 0 21 1 2078.0981 Q99959 Q99959 316 336 PKP2 Plakophilin-2 yes yes 3 3.3774E-14 88.755 By MS/MS 1 0.71527 0.77716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71527 0.77716 NaN 1 0 Median NaN NaN NaN 0 0 Median 10391000 6010700 4380400 0 0 0 0 0 0 0 0 0 0 0 0 10391000 6010700 4380400 0 0 0 28108 3773 29577 147746 148709 148709 1 RAIADMLR SCRQEDVIATANLSRRAIADMLRACKEAAY ATANLSRRAIADMLRACKEAAYHPEVAPDV R R A L R A 2 2 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 8 1 944.52257 Q9Y490 Q9Y490 2210 2217 TLN1 Talin-1 yes yes 2 0.0096342 69.825 By MS/MS By MS/MS By matching 2 1 1 1.135 1.0989 15.335 4 Median 0.99256 0.99953 19.103 2 0 Median 1.2395 1.2517 NaN 1 0 Median 1.0678 1.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18091000 8752100 9338600 11770000 6043800 5725800 2503000 1277000 1226000 3818000 1431300 2386700 0 0 0 0 0 0 0 0 0 28109 4441 29578 147747;147748;147749;147750 148710;148711;148712 148711 3 RAIKNDSVVAGGGAIEMELSK EETERSLHDAIMIVRRAIKNDSVVAGGGAI SVVAGGGAIEMELSKYLRDYSRTIPGKQQL R R A S K Y 3 1 1 1 0 0 2 3 0 2 1 2 1 0 0 2 0 0 0 2 0 0 21 2 2144.126 Q99832 Q99832 398 418 CCT7 T-complex protein 1 subunit eta yes yes 3 4.9869E-14 88.036 By MS/MS 1 1.2311 1.3327 NaN 1 Median 1.2311 1.3327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21435000 9456200 11979000 21435000 9456200 11979000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28110 3771 29579 147751 148713;148714 148714 2 RAIPLPIQMYYQQQPVSTSVVR SSNGQAHIHVVGVKRRAIPLPIQMYYQQQP QMYYQQQPVSTSVVRVDSVPDVSPAPSPAG R R A V R V 1 2 0 0 0 4 0 0 0 2 1 0 1 0 3 2 1 0 2 3 0 0 22 1 2573.3788 Q68CP9;F8WCU9;F8W108 Q68CP9 602 623 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 9.3515E-10 58.712 By MS/MS 1 0.47231 0.59664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47231 0.59664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4941000 3325600 1615500 0 0 0 0 0 0 4941000 3325600 1615500 0 0 0 0 0 0 0 0 0 28111 3122 29580 147752 148715 148715 1 RAIVHDNKDGTYAVTYIPDK GLLAVQITDQEGKPKRAIVHDNKDGTYAVT DNKDGTYAVTYIPDKTGRYMIGVTYGGDDI K R A D K T 2 1 1 3 0 0 0 1 1 2 0 2 0 0 1 0 2 0 2 2 0 0 20 2 2275.1597 O75369;E7EN95 O75369 1565 1584 FLNB Filamin-B yes no 4 1.6165E-10 87.352 By MS/MS By MS/MS By matching 2 1 1 1.0428 1.0169 2.4413 4 Linear 0.9266 0.99383 2.3897 2 0 Median 0.9603 1.0231 NaN 1 0 Median 0.78233 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65238000 31507000 33731000 20691000 8856900 11834000 37055000 18421000 18634000 7491100 4228900 3262200 0 0 0 0 0 0 0 0 0 28112 1664 29581 147753;147754;147755;147756 148716;148717;148718 148717 3 RAIYQATYR YSYDLEVEQAYDLARRAIYQATYRDAYSGG AYDLARRAIYQATYRDAYSGGAVNLYHVRE R R A Y R D 2 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 9 1 1140.604 P28074 P28074 217 225 PSMB5 Proteasome subunit beta type-5 yes yes 2 0.00334 72.607 By MS/MS By MS/MS By MS/MS 2 2 1 1.1747 1.0745 11.382 5 Median 1.0726 1.1354 14.237 2 0 Median 1.2017 1.0592 2.0235 2 0 Median 1.268 1.3147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29797000 13249000 16547000 14307000 6966400 7340400 6602200 2999700 3602500 8887700 3283300 5604400 0 0 0 0 0 0 0 0 0 28113 2162 29582 147757;147758;147759;147760;147761 148719;148720;148721;148722;148723;148724 148719 6 RALDIPLVK LWAPRPFNLRSGRTRRALDIPLVKNWYREH RSGRTRRALDIPLVKNWYREHCPAGQPVKV R R A V K N 1 1 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1023.6441 Q6P2Q9;I3L0J9 Q6P2Q9 420 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0039965 69.423 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 1.0912 1.0338 12.923 8 Median 1.1333 1.153 NaN 1 0 Median 0.96311 0.92493 20.809 2 0 Median 0.85485 1.0248 NaN 1 0 Median 1.2647 1.221 NaN 1 0 Median 0.9203 1.0429 NaN 1 0 Median 1.0912 0.96661 2.963 2 0 Median 25304000 12604000 12700000 2751900 1183000 1568800 3275900 1566100 1709700 9685200 4814900 4870200 1455300 701060 754290 7280800 3938300 3342500 854840 400320 454520 28114 3157 29583 147762;147763;147764;147765;147766;147767;147768;147769 148725;148726 148725 2 RALDLNLK RLPENLYNDRMFRIKRALDLNLKHQILPKE DRMFRIKRALDLNLKHQILPKEQWTKYEEE K R A L K H 1 1 1 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 941.56581 P14927;B7Z2R2;E5RHG9 P14927 65 72 UQCRB Cytochrome b-c1 complex subunit 7 yes no 2 0.018474 66.073 By MS/MS 1 0.90989 0.89223 NaN 1 Median 0.90989 0.89223 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9326600 6030600 3295900 9326600 6030600 3295900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28115 630 29584 147770 148727 148727 1 RALDLVAAK KISDDLMQKISTQNRRALDLVAAKCYYYHA ISTQNRRALDLVAAKCYYYHARVYEFLDKL R R A A K C 3 1 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 955.58147 O43242;H0YGV8 O43242 201 209 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 2 0.0069306 59.35 By MS/MS By MS/MS 1 1 1.2155 1.1679 4.9835 2 Median 1.198 1.2098 NaN 1 0 Median 1.2331 1.1275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8440700 3482000 4958800 2970100 1194300 1775800 5470700 2287600 3183000 0 0 0 0 0 0 0 0 0 0 0 0 28116 1560 29585 147771;147772 148728;148729;148730;148731 148730 4 RALELDGQSVK YLKMQQHEQALADCRRALELDGQSVKAHFF ADCRRALELDGQSVKAHFFLGQCQLEMESY R R A V K A 1 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1214.6619 Q9UNE7;H3BS86 Q9UNE7 85 95 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.060076 27.115 By matching By MS/MS 1 1 1.6491 1.5689 41.131 2 Median 2.1244 2.0985 NaN 1 0 Median 1.2802 1.173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2166300 841620 1324700 1188000 282020 906000 978280 559590 418690 0 0 0 0 0 0 0 0 0 0 0 0 28117 4342 29586 147773;147774 148732 148732 1 RALELEQER EQTKKAQQELEEQTRRALELEQERKRAQSE LEEQTRRALELEQERKRAQSEAEKLAKERQ R R A E R K 1 2 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1142.6044 P26038 P26038 371 379 MSN Moesin yes yes 2 0.0027238 76.228 By matching By MS/MS By MS/MS 1 2 1 1.2234 1.1024 12.665 4 Linear 1.0938 1.1215 NaN 1 0 Median 1.0646 1.0092 10.075 2 0 Median 1.1462 1.2791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14043000 6563700 7479600 2117200 973230 1144000 8127400 3782300 4345100 3798700 1808100 1990500 0 0 0 0 0 0 0 0 0 28118 2139 29587 147775;147776;147777;147778 148733;148734;148735 148734 3 RALELEQERK EQTKKAQQELEEQTRRALELEQERKRAQSE EEQTRRALELEQERKRAQSEAEKLAKERQE R R A R K R 1 2 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 2 1270.6993 P26038 P26038 371 380 MSN Moesin yes yes 3 0.060494 16.254 By matching By MS/MS 1 1 0.95054 1.0112 29.616 2 Median 0.81303 0.82011 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1113 1.2467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 756630 353500 403130 290900 106210 184690 0 0 0 465720 247280 218440 0 0 0 0 0 0 0 0 0 28119 2139 29588 147779;147780 148736 148736 1 RALEQQVEEMK KDDVGKSVHELEKSKRALEQQVEEMKTQLE EKSKRALEQQVEEMKTQLEELEDELQATED K R A M K T 1 1 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1359.6816 P35579 P35579 1528 1538 MYH9 Myosin-9 yes yes 2 0.00019658 117.67 By MS/MS 1 0.98519 0.93194 NaN 1 Median NaN NaN NaN 0 0 Median 0.98519 0.93194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4696700 2331700 2365000 0 0 0 4696700 2331700 2365000 0 0 0 0 0 0 0 0 0 0 0 0 28120 2244 29589 147781 148737;148738 148738 2 RALEYTIYNQELNETR EKEELAQYQKWDKMRRALEYTIYNQELNET ALEYTIYNQELNETRAKLDELSAKRETSGE R R A T R A 1 2 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 16 1 2011.9963 Q9UQE7 Q9UQE7 221 236 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 2.5256E-14 135.47 By MS/MS By MS/MS 3 2 0.83563 1.0163 12.463 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83563 1.0163 3.9373 3 2 Median NaN NaN NaN 0 0 Median 0.93637 1.0152 24.17 2 0 Median NaN NaN NaN 0 0 Median 66838000 32776000 34062000 0 0 0 0 0 0 50569000 24908000 25661000 0 0 0 16268000 7867400 8400900 0 0 0 28121 4362 29590 147782;147783;147784;147785;147786 148739;148740;148741;148742;148743;148744;148745;148746 148742 8 RALHFVFK ______________________________ ______________________________ R R A F K V 1 1 0 0 0 0 0 0 1 0 1 1 0 2 0 0 0 0 0 1 0 0 8 1 1016.592 Q9HC38;I3L3Q4;I3NI27;I3NI24;I3L2C2;I3L1F4;I3L277 Q9HC38 5 12 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.020031 64.803 By MS/MS 1 1.4064 1.4143 NaN 1 Median 1.4064 1.4143 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13602000 5870900 7730800 13602000 5870900 7730800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28122 4025 29591 147787 148747 148747 1 RALIVLAHSER ______________________________ MVGRRALIVLAHSERTSFNYAMKEAAAAAL R R A E R T 2 2 0 0 0 0 1 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 11 1 1263.7412 B4DLR8;H3BRK3;P15559 B4DLR8 5 15 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 3 0.020678 30.205 By MS/MS By matching 1 1 1.0047 0.99862 41.402 2 Median 1.2431 1.3383 NaN 1 0 Median 0.81205 0.74518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4864500 1924900 2939600 4102500 1498600 2603900 762010 426350 335660 0 0 0 0 0 0 0 0 0 0 0 0 28123 599 29592 147788;147789 148748 148748 0 RALLSLR WARRASRTRLAAWARRALLSLRSPKARRGK TRLAAWARRALLSLRSPKARRGKARRRAAK R R A L R S 1 2 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 1 827.53412 Q9UNF1;Q5H909 Q9UNF1 240 246 MAGED2 Melanoma-associated antigen D2 yes no 2 0.025846 63.565 By MS/MS By matching 2 2 1.3 1.2516 31.191 4 Median 0.94824 0.95304 17.452 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7564 1.5702 10.99 2 0 Median 9516200 3990700 5525500 6134800 2797100 3337700 0 0 0 0 0 0 0 0 0 0 0 0 3381500 1193600 2187800 28124 4343 29593 147790;147791;147792;147793 148749;148750 148749 2 RALPEFFNGK YAAWFDYNSVHAIERRALPEFFNGKNKSKT HAIERRALPEFFNGKNKSKTPEIYLAYRNF R R A G K N 1 1 1 0 0 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1177.6244 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 444 453 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.00057885 76.827 By MS/MS By matching By matching 1 1 1 0.98182 1.0111 23.628 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98182 1.113 NaN 1 0 Median 1.0521 1.0111 NaN 1 0 Median 0.62594 0.71058 NaN 1 0 Median NaN NaN NaN 0 0 Median 17163000 9100400 8062300 0 0 0 0 0 0 13733000 7182600 6550300 1202500 543590 658880 2227200 1374200 853060 0 0 0 28125 3455;3567 29594 147794;147795;147796 148751 148751 1 RALPNNTSSSPQPK KKGEPHHELPPGSTKRALPNNTSSSPQPKK KRALPNNTSSSPQPKKKPLDGEYFTLQIRG K R A P K K 1 1 2 0 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 0 0 0 14 1 1495.7743 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22 A0A0U1RQC9 267 280 TP53 Cellular tumor antigen p53 yes no 3 0.053874 11.105 By MS/MS 1 1.1799 1.2109 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1799 1.2109 NaN 1 0 Median NaN NaN NaN 0 0 Median 7733000 4079900 3653100 0 0 0 0 0 0 0 0 0 0 0 0 7733000 4079900 3653100 0 0 0 28126 299 29595 147797 148752 148752 1 RALQAAIQQLAEAQPEATAK LFCLTLHRYRDAASRRALQAAIQQLAEAQP AIQQLAEAQPEATAKNLLHSLQSSGIGSKA R R A A K N 7 1 0 0 0 4 2 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 20 1 2107.1386 Q92616 Q92616 68 87 GCN1L1 Translational activator GCN1 yes yes 3 1.0239E-07 58.123 By MS/MS 1 0.94534 0.95219 NaN 1 Median 0.94534 0.95219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7271400 4031800 3239600 7271400 4031800 3239600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28127 3544 29596 147798 148753 148753 1 RALVILAK ______________________________ ______________________________ K R A A K G 2 1 0 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 1 882.60147 Q99497;K7ELW0 Q99497 5 12 PARK7 Protein deglycase DJ-1 yes no 2 0.0051048 86.866 By MS/MS By MS/MS 1 2 1.2819 1.3096 7.9164 3 Plateau 1.2716 1.3278 NaN 1 0 Median 1.2861 1.1644 3.2181 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19270000 8371300 10899000 13806000 5904000 7901500 5464700 2467200 2997400 0 0 0 0 0 0 0 0 0 0 0 0 28128 3749 29597 147799;147800;147801 148754;148755;148756;148757;148758 148755 5 RAMELLK RDMIREVCGFAPYERRAMELLKVSKDKRAL CGFAPYERRAMELLKVSKDKRALKFIKKRV R R A L K V 1 1 0 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 1 859.49496 Q9Y3U8;J3QSB5 Q9Y3U8 56 62 RPL36 60S ribosomal protein L36 yes no 2 0.021189 73.039 By matching By MS/MS By MS/MS By matching 3 2 1 2 1.2174 1.1048 9.1622 8 Median 1.17 1.1873 6.6362 3 0 Median 1.1974 1.057 1.7589 2 0 Median 1.2669 1.3164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2694 1.0661 1.594 2 0 Median 87560000 39993000 47567000 31401000 14274000 17127000 46046000 21654000 24392000 7340100 3132600 4207500 0 0 0 0 0 0 2773100 932540 1840500 28129 4434 29598 147802;147803;147804;147805;147806;147807;147808;147809 148759;148760;148761 148759 3 RANEFLEVGK ______________________________ ENALKRANEFLEVGKKQPALDVLYDVMKSK K R A G K K 1 1 1 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1161.6142 Q14152 Q14152 14 23 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.019554 39.622 By MS/MS By MS/MS 1 1 1.1386 1.1165 14.643 2 Median 0.99684 1.0067 NaN 1 0 Median 1.3005 1.2383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6956800 3089100 3867700 4628700 2220200 2408500 2328100 868930 1459200 0 0 0 0 0 0 0 0 0 0 0 0 28130 2860 29599 147810;147811 148762;148763;148764 148763 3 RANEFLEVGKK ______________________________ NALKRANEFLEVGKKQPALDVLYDVMKSKK K R A K K Q 1 1 1 0 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 11 2 1289.7092 Q14152 Q14152 14 24 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.00084587 52.693 By MS/MS By MS/MS 1 1 0.8314 0.91246 8.2027 2 Median 0.81455 0.86104 NaN 1 0 Median 0.8486 0.96695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3335800 1440900 1895000 1582700 751730 831020 1753100 689150 1063900 0 0 0 0 0 0 0 0 0 0 0 0 28131 2860 29600 147812;147813 148765;148766;148767 148767 3 RANENSNIQVLSER VIGQTITISRVEGRRRANENSNIQVLSERS RRANENSNIQVLSERSATEVDNNFSKPPPF R R A E R S 1 2 3 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 14 1 1628.823 Q6UN15 Q6UN15 331 344 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 3 1.9735E-06 91.845 By MS/MS 1 0.87711 0.97878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87711 0.97878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14669000 7882400 6786500 0 0 0 0 0 0 14669000 7882400 6786500 0 0 0 0 0 0 0 0 0 28132 3185 29601 147814 148768;148769 148769 2 RAPDQAAEIGSR LGSRGLCTRLATPPRRAPDQAAEIGSRGST PPRRAPDQAAEIGSRGSTKAQGPQQQPGSE R R A S R G 3 2 0 1 0 1 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 12 1 1269.6426 Q3ZCQ8;M0QXC3;M0R2Z3;M0R303;M0R2D2;M0R1Y4;M0R003 Q3ZCQ8 32 43 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 3 0.0048743 32.624 By MS/MS 2 0.84462 0.78308 11.622 2 Median NaN NaN NaN 0 0 Median 0.84462 0.78308 11.622 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1550600 865120 685470 0 0 0 1550600 865120 685470 0 0 0 0 0 0 0 0 0 0 0 0 28133 3016 29602 147815;147816 148770 148770 1 RAPFDLFENK VEGQLEFRALLFIPRRAPFDLFENKKKKNN LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R R A N K K 1 1 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 10 1 1235.6299 P08238;Q58FF7 P08238 338 347 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2;3 3.2335E-05 145.72 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.96511 0.95229 21.154 5 Median 1.0336 1.0617 6.7127 2 1 Median 0.96511 0.95229 NaN 1 0 Median 0.60166 0.68298 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66259 0.73257 NaN 1 0 Median NaN NaN NaN 0 0 Median 122490000 61539000 60953000 82376000 40953000 41423000 32296000 16184000 16112000 5146300 3073200 2073200 0 0 0 2673300 1328700 1344600 0 0 0 28134 1899 29603 147817;147818;147819;147820;147821 148771;148772;148773;148774;148775;148776;148777;148778;148779;148780;148781;148782;148783;148784;148785;148786;148787 148776 17 RAPFDLFENKK VEGQLEFRALLFIPRRAPFDLFENKKKKNN FIPRRAPFDLFENKKKKNNIKLYVRRVFIM R R A K K K 1 1 1 1 0 0 1 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 11 2 1363.7248 P08238;Q58FF7 P08238 338 348 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2;3 6.6093E-09 123.86 By MS/MS By MS/MS By MS/MS 2 2 1 0.9594 1.1035 14.405 4 Median 0.94258 1.0382 NaN 1 0 Median 1.2426 1.2049 21.697 2 0 Median 0.94157 1.173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38463000 18930000 19533000 23948000 10877000 13071000 12477000 6984800 5492000 2038600 1068700 969980 0 0 0 0 0 0 0 0 0 28135 1899 29604 147822;147823;147824;147825;147826 148788;148789;148790;148791;148792;148793;148794;148795;148796;148797;148798 148795 11 RAPFDLFENR VEGQLEFRALLFVPRRAPFDLFENRKKKNN LFVPRRAPFDLFENRKKKNNIKLYVRRVFI R R A N R K 1 2 1 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 10 1 1263.636 P07900 P07900 346 355 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2;3 6.1835E-22 195.36 By MS/MS By MS/MS By MS/MS 2 2 1 0.98806 1.0552 8.5379 5 Median 1.0724 1.0995 5.8144 2 0 Median 0.96906 0.95877 2.7449 2 0 Median 0.97079 1.1217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147840000 70974000 76869000 123020000 58266000 64753000 22996000 11817000 11179000 1827400 890670 936680 0 0 0 0 0 0 0 0 0 28136 1894 29605 147827;147828;147829;147830;147831 148799;148800;148801;148802;148803;148804;148805;148806;148807;148808;148809;148810;148811;148812;148813;148814;148815;148816;148817;148818;148819;148820;148821;148822;148823;148824;148825;148826;148827 148801 29 RAPFDLFENRK VEGQLEFRALLFVPRRAPFDLFENRKKKNN FVPRRAPFDLFENRKKKNNIKLYVRRVFIM R R A R K K 1 2 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 11 2 1391.731 P07900 P07900 346 356 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 5.7839E-05 78.692 By MS/MS By MS/MS By matching 1 1 1 1.2032 1.2136 14.132 3 Median 1.2032 1.2136 NaN 1 0 Median 0.9713 1.1825 NaN 1 0 Median 1.2991 1.5286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18905000 7832600 11072000 14006000 5974800 8031600 3318600 1122500 2196200 1579700 735340 844320 0 0 0 0 0 0 0 0 0 28137 1894 29606 147832;147833;147834 148828;148829;148830;148831;148832;148833;148834;148835;148836 148831 9 RAPSSAQYLEEK DMSPVSQAPREAPARRAPSSAQYLEEKSDQ PARRAPSSAQYLEEKSDQQKKEELLNAMVA R R A E K S 2 1 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 1 0 0 0 12 1 1377.6888 A0A0A6YYL4;P57737;I3L442 A0A0A6YYL4 876 887 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 8.7512E-05 94.297 By matching By MS/MS 1 2 1.1861 1.1051 5.2321 3 Plateau 1.1548 1.1993 NaN 1 0 Median 1.1346 1.0965 1.0986 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12470000 6759700 5710800 2691700 1542700 1149000 9778700 5217000 4561700 0 0 0 0 0 0 0 0 0 0 0 0 28138 209 29607 147835;147836;147837 148837;148838;148839 148838 3 RAPSVANVGSHCDLSLK VTGEGRVKESITRRRRAPSVANVGSHCDLS PSVANVGSHCDLSLKIPEISIQDMTAQVTS R R A L K I 2 1 1 1 1 0 0 1 1 0 2 1 0 0 1 3 0 0 0 2 0 0 17 1 1809.9156 P21333;Q60FE5 P21333 2149 2165 FLNA Filamin-A no no 3 8.6271E-14 137.05 By MS/MS 1 0.80396 0.7338 NaN 1 Median NaN NaN NaN 0 0 Median 0.80396 0.7338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88208000 49686000 38522000 0 0 0 88208000 49686000 38522000 0 0 0 0 0 0 0 0 0 0 0 0 28139 2088;3120 29608 147838 148840;148841 148841 2 RAQEEAERLEADR SEQIQRALQLEEERKRAQEEAERLEADRMA RKRAQEEAERLEADRMAALRAKEELERQAV K R A D R M 3 3 0 1 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 13 2 1571.7652 P15311;E7EQR4 P15311 381 393 EZR Ezrin yes no 3 0.0048487 33.685 By MS/MS By MS/MS 1 1 1.2366 1.3019 36.567 2 Median 1 1.0053 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5293 1.6861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968700 1521900 2446900 1243800 490290 753500 0 0 0 2724900 1031600 1693400 0 0 0 0 0 0 0 0 0 28140 879 29609 147839;147840 148842;148843 148843 2 RAQEILSQLPIK GKVVVFIKPTCPYCRRAQEILSQLPIKQGL YCRRAQEILSQLPIKQGLLEFVDITATNHT R R A I K Q 1 1 0 0 0 2 1 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 12 1 1394.8245 P35754 P35754 28 39 GLRX Glutaredoxin-1 yes yes 2;3 0.00035616 129.85 By MS/MS By matching 3 1 0.92886 0.91083 8.6667 3 Median 0.90065 0.88317 4.3604 2 1 Median 1.151 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36109000 18188000 17921000 33903000 17056000 16846000 2206700 1132300 1074400 0 0 0 0 0 0 0 0 0 0 0 0 28141 2250 29610 147841;147842;147843;147844 148844;148845;148846;148847;148848 148846 5 RAQLADSFHLQQFFR LLSRRNALHERAMRRRAQLADSFHLQQFFR RAQLADSFHLQQFFRDSDELKSWVNEKMKT R R A F R D 2 2 0 1 0 3 0 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 15 1 1862.954 A0A0D9SF54;Q13813 Q13813 566 580 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 8.3341E-05 56.482 By MS/MS By MS/MS 2 2 1.0812 1.2567 7.0874 4 Median 1.2523 1.3392 10.247 2 0 Median NaN NaN NaN 0 0 Median 0.99266 1.254 1.559 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27814000 13790000 14025000 7591900 3317800 4274100 0 0 0 20223000 10472000 9750800 0 0 0 0 0 0 0 0 0 28142 264;2838 29611 147845;147846;147847;147848 148849;148850;148851;148852 148851 4 RARPAEVGGMQLR AGGAAPETPAISPSKRARPAEVGGMQLRFA SKRARPAEVGGMQLRFARLSEHATAPTRGS K R A L R F 2 3 0 0 0 1 1 2 0 0 1 0 1 0 1 0 0 0 0 1 0 0 13 2 1439.7779 H0YNW5;H0YKC5;P33316;H0YMM5;H0YNJ9;H0YKI0 H0YNW5 18 30 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial yes no 3 0.035901 20.096 By MS/MS By matching 1 1 1.0787 1.0168 0.013985 2 Median 0.96625 1.0167 NaN 1 0 Median 1.2043 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1273300 574340 698980 986220 428990 557220 287100 145350 141750 0 0 0 0 0 0 0 0 0 0 0 0 28143 1190 29612 147849;147850 148853 148853 1 RASAYEALEK SALALVPFSIKPLLRRASAYEALEKYPMAY KPLLRRASAYEALEKYPMAYVDYKTVLQID R R A E K Y 3 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 10 1 1136.5826 Q15785 Q15785 91 100 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.0098867 48.423 By MS/MS 1 1.5841 1.495 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5841 1.495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2173300 760010 1413300 0 0 0 0 0 0 0 0 0 2173300 760010 1413300 0 0 0 0 0 0 28144 2971 29613 147851 148854 148854 1 RASGQAFELILSPR ______________________________ KRASGQAFELILSPRSKESVPEFPLSPPKK K R A P R S 2 2 0 0 0 1 1 1 0 1 2 0 0 1 1 2 0 0 0 0 0 0 14 1 1543.8471 A2A2D0;P16949 A2A2D0 14 27 STMN1 Stathmin yes no 3 2.219E-05 82.908 By MS/MS By MS/MS 1 1 0.83333 0.88909 9.0291 2 Median 0.79576 0.8341 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87267 0.9477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15669000 8318600 7350900 13177000 7107100 6070400 0 0 0 2492000 1211500 1280500 0 0 0 0 0 0 0 0 0 28145 496 29614 147852;147853 148855;148856;148857 148856 3 RASHTAPQVLFSHR VVIGKVFMQEFKEGRRASHTAPQVLFSHRE RRASHTAPQVLFSHREPPLELKDTDAAVGD R R A H R E 2 2 0 0 0 1 0 0 2 0 1 0 0 1 1 2 1 0 0 1 0 0 14 1 1605.8488 O15144;H7C3F9 O15144 190 203 ARPC2 Actin-related protein 2/3 complex subunit 2 yes no 3;4 1.6818E-08 101.38 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1429 1.1005 22.27 5 Median 1.077 1.1594 NaN 1 0 Median 1.1956 1.1005 NaN 1 0 Median 0.88886 0.92775 NaN 1 0 Median 1.4359 1.3399 32.27 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28513000 14483000 14030000 13403000 7564100 5838800 4068500 1805800 2262700 4832200 2501700 2330400 6209400 2610900 3598500 0 0 0 0 0 0 28146 1526 29615 147854;147855;147856;147857;147858 148858;148859;148860;148861;148862;148863;148864;148865;148866 148865 9 RASMQPIQIAEGTGITTR TDEEMKTGDPQETLRRASMQPIQIAEGTGI MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R R A T R Q 2 2 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 18 1 1929.0102 A0A087WY61;Q14980 Q14980 1967 1984 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 4.7592E-13 136.26 By MS/MS By MS/MS 1 1 0.76145 0.89013 42.729 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9532 1.2041 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60828 0.65802 NaN 1 0 Median NaN NaN NaN 0 0 Median 44714000 19335000 25380000 0 0 0 0 0 0 34812000 13267000 21545000 0 0 0 9902500 6067600 3834900 0 0 0 28147 2905;77 29616 147859;147860 148867;148868;148869;148870 148867 4 RATDVMIAGK DNLYGCRESLIDGIKRATDVMIAGKVAVVA IDGIKRATDVMIAGKVAVVAGYGDVGKGCA K R A G K V 2 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 10 1 1060.5699 P23526 P23526 205 214 AHCY Adenosylhomocysteinase yes yes 2 0.0013595 82.287 By MS/MS By MS/MS 1 2 1.3281 1.2998 26.893 3 Median 1.2833 1.2998 NaN 1 0 Median 1.7156 1.5892 34.308 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7460600 3057100 4403500 1620700 758040 862620 5839900 2299000 3540900 0 0 0 0 0 0 0 0 0 0 0 0 28148 2116 29617 147861;147862;147863 148871;148872;148873;148874 148874 4 RATSLAWHPTHPSTVAVGSK LDSYRILQKAAPFDRRATSLAWHPTHPSTV AWHPTHPSTVAVGSKGGDIMLWNFGIKDKP R R A S K G 3 1 0 0 0 0 0 1 2 0 1 1 0 0 2 3 3 1 0 2 0 0 20 1 2102.1021 Q92466;A0A087X0X5;A0A087WW71;A0A087WYT8 Q92466 113 132 DDB2 DNA damage-binding protein 2 yes no 4 7.7632E-08 59.339 By MS/MS By MS/MS 3 1 0.59296 0.63717 50.007 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60046 0.60928 46.767 3 0 Plateau 1.0633 0.92893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29662000 18573000 11089000 0 0 0 0 0 0 27085000 17351000 9734100 2576900 1222400 1354500 0 0 0 0 0 0 28149 3527 29618 147864;147865;147866;147867 148875;148876;148877;148878;148879 148876 5 RATSPSSSVSGDFDDGHHSVSTPGPSR ______________________________ FDDGHHSVSTPGPSRKRRRLSNLPTVDPIA R R A S R K 1 2 0 3 0 0 0 3 2 0 0 0 0 1 3 8 2 0 0 2 0 0 27 1 2726.2281 Q86U86;E7EVG2;C9JPI5;C9JQF1;C9J053;C9J409;C9JCJ2 Q86U86 7 33 PBRM1 Protein polybromo-1 yes no 4 6.5437E-14 59.661 By MS/MS By MS/MS 1 1 0.54811 0.58623 3.2703 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47493 0.59995 NaN 1 0 Median 0.63257 0.57283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17391000 11181000 6209800 0 0 0 0 0 0 16207000 10512000 5695600 1183600 669400 514160 0 0 0 0 0 0 28150 3273 29619 147868;147869 148880;148881;148882;148883;148884;148885 148882 6 RATTGTQTLLSSGTR RGLLRAQGLRGWKARRATTGTQTLLSSGTR RATTGTQTLLSSGTRLKHHGRQAPGLSQAK R R A T R L 1 2 0 0 0 1 0 2 0 0 2 0 0 0 0 2 5 0 0 0 0 0 15 1 1548.822 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 709 723 SUGP2 SURP and G-patch domain-containing protein 2 yes no 3 0.00023212 44.252 By MS/MS By MS/MS 1 1 0.84381 0.96999 19.539 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69463 0.84482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.025 1.1137 NaN 1 0 Median NaN NaN NaN 0 0 Median 4975100 2301800 2673300 0 0 0 0 0 0 1891300 928350 962980 0 0 0 3083800 1373400 1710300 0 0 0 28151 1437 29620 147870;147871 148886;148887 148886 1 RATTPLYHGFK PPFGWASGSQDSNSRRATTPLYHGFKEVEE SNSRRATTPLYHGFKEVEENWSKHFSSDAV R R A F K E 1 1 0 0 0 0 0 1 1 0 1 1 0 1 1 0 2 0 1 0 0 0 11 1 1289.6881 Q5T4S7 Q5T4S7 902 912 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 0.056133 23.711 By MS/MS 1 0.93879 0.87482 NaN 1 Median NaN NaN NaN 0 0 Median 0.93879 0.87482 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4995700 2484200 2511500 0 0 0 4995700 2484200 2511500 0 0 0 0 0 0 0 0 0 0 0 0 28152 3089 29621 147872 148888 148888 1 RATVNTFGYIAK FELLELLKAHKKAIRRATVNTFGYIAKAIG AIRRATVNTFGYIAKAIGPHDVLATLLNNL R R A A K A 2 1 1 0 0 0 0 1 0 1 0 1 0 1 0 0 2 0 1 1 0 0 12 1 1339.7248 O75533;H7C341 O75533 1075 1086 SF3B1 Splicing factor 3B subunit 1 yes no 2;3 7.0385E-06 101.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 5 2 1.0913 1.2005 20.521 11 Median NaN NaN NaN 0 0 Median 2.1239 2.0028 NaN 1 0 Median 1.0519 1.1923 11.519 2 0 Median 1.5549 1.4943 NaN 1 0 Median 1.0561 1.1555 7.1964 5 1 Median 1.2644 1.1077 26.71 2 0 Median 79876000 36785000 43091000 0 0 0 3146200 1186200 1960000 29131000 12813000 16317000 1785700 733270 1052500 43947000 21209000 22738000 1866400 843970 1022400 28153 1683 29622 147873;147874;147875;147876;147877;147878;147879;147880;147881;147882;147883 148889;148890;148891;148892;148893;148894;148895;148896;148897;148898;148899;148900;148901;148902;148903 148896 15 RATWLHQALR ETADSTLCHILNLYRRATWLHQALREGTRV LNLYRRATWLHQALREGTRVQSVEQIREVA R R A L R E 2 2 0 0 0 1 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 10 1 1250.6996 Q13363;D6RAX2;E7ESU7;E7EPF8;E9PGB1 Q13363 142 151 CTBP1 C-terminal-binding protein 1 yes no 3 8.938E-05 81.017 By MS/MS By MS/MS 2 1 1.3339 1.2442 14.576 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.203 1.2673 20.559 2 0 Median 1.3339 1.2442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18466000 7500800 10965000 0 0 0 0 0 0 7025100 3011900 4013200 11441000 4488900 6952100 0 0 0 0 0 0 28154 2808 29623 147884;147885;147886 148904;148905;148906;148907;148908 148907 5 RAVDLIQK LGSDYCESIRGIGPKRAVDLIQKHKSIEEI IRGIGPKRAVDLIQKHKSIEEIVRRLDPNK K R A Q K H 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 941.56581 P39748;I3L3E9 P39748 245 252 FEN1 Flap endonuclease 1 yes no 2 0.0044319 101.33 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 4 1 3 1.1873 1.1242 12.448 15 Median 0.93686 0.96888 17.22 2 0 Median 1.1028 1.0223 13.874 2 0 Median 1.0694 1.1471 7.5312 3 0 Median 1.1825 1.1093 4.3538 4 0 Median 1.3795 1.448 NaN 1 0 Median 1.3688 1.2374 7.1261 3 0 Median 70933000 32942000 37990000 6012100 3117600 2894500 7793300 3652700 4140600 24689000 11495000 13195000 25957000 11984000 13973000 736960 256980 479980 5744300 2436300 3308000 28155 2283 29624 147887;147888;147889;147890;147891;147892;147893;147894;147895;147896;147897;147898;147899;147900;147901 148909;148910;148911;148912;148913;148914;148915;148916;148917;148918;148919;148920;148921;148922 148916 14 RAVGIWHCGSCMK AKYTCSFCGKTKMKRRAVGIWHCGSCMKTV KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV R R A M K T 1 1 0 0 2 0 0 2 1 1 0 1 1 0 0 1 0 1 0 1 0 0 13 1 1560.7112 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6 C9J4Z3 26 38 RPL37A 60S ribosomal protein L37a yes no 2;3 0.00032279 55.196 By matching By MS/MS 1 2 1.2494 1.1952 6.1644 3 Median 1.2188 1.1952 NaN 1 0 Median 1.3274 1.172 8.5699 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18057000 8369000 9687900 1074400 588410 485980 16983000 7780600 9201900 0 0 0 0 0 0 0 0 0 0 0 0 28156 676 29625 147902;147903;147904 148923;148924;148925 148924 3 RAVGPSSTQLYMVR GEKDPKSGFDIKVPRRAVGPSSTQLYMVRT RRAVGPSSTQLYMVRTMLESLIADKSGSKK R R A V R T 1 2 0 0 0 1 0 1 0 0 1 0 1 0 1 2 1 0 1 2 0 0 14 1 1563.8191 E7EVJ5;H7C229;E7EW33;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 550 563 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 1 no no 2;3 2.276E-05 84.365 By MS/MS By MS/MS 2 1 1.0868 1.2708 14 3 Median 1.0244 1.1381 15.586 2 1 Median NaN NaN NaN 0 0 Median 1.0868 1.3217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22573000 11250000 11323000 9578200 4260300 5318000 0 0 0 12995000 6989700 6005100 0 0 0 0 0 0 0 0 0 28157 3224;897 29626 147905;147906;147907 148926;148927;148928 148928 3 RAVIILR DEITHCIRPQDIKERRAVIILRKTRLDAPR RPQDIKERRAVIILRKTRLDAPRLETKSLS R R A L R K 1 2 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 7 1 839.57051 Q6P6C2 Q6P6C2 277 283 ALKBH5 RNA demethylase ALKBH5 yes yes 2 0.022962 69.432 By matching By MS/MS By matching 1 1 2 0.96385 0.92561 12.568 4 Median NaN NaN NaN 0 0 Median 0.87658 0.81862 NaN 1 0 Median 0.99877 1.0814 NaN 1 0 Median 1.0215 0.92561 9.1499 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9881800 4637600 5244200 0 0 0 260900 116190 144710 2766900 1353000 1413800 6854000 3168400 3685600 0 0 0 0 0 0 28158 3163 29627 147908;147909;147910;147911 148929 148929 1 RAVLETIR LYGQPVAAGDTPAPRRAVLETIRTYLTITD GDTPAPRRAVLETIRTYLTITDTQLVNSLL R R A I R T 1 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 1 956.57671 Q5JTH9 Q5JTH9 711 718 RRP12 RRP12-like protein yes yes 2 0.0035776 107.69 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 1.0988 1.1331 13.963 8 Median 1.081 1.156 NaN 1 0 Median 1.1575 1.1159 NaN 1 0 Median 0.87551 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1169 1.2083 11.767 3 0 Median 1.0788 0.96097 12.923 2 0 Median 40544000 19007000 21537000 746850 314520 432330 7592100 3371500 4220600 3374400 1649800 1724600 0 0 0 23656000 11178000 12478000 5175100 2493900 2681200 28159 3052 29628 147912;147913;147914;147915;147916;147917;147918;147919 148930;148931;148932;148933;148934;148935;148936;148937;148938;148939 148933 10 RAVSQIVTVYDK EEMESQLQERVESSRRAVSQIVTVYDKLQE SSRRAVSQIVTVYDKLQEKVELLSRKLNSG R R A D K L 1 1 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 0 1 3 0 0 12 1 1377.7616 Q5VTR2 Q5VTR2 183 194 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.00086291 69.451 By MS/MS 1 1.0611 1.0197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0611 1.0197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1388000 551850 836170 0 0 0 0 0 0 0 0 0 1388000 551850 836170 0 0 0 0 0 0 28160 3112 29629 147920 148940 148940 1 RAVSQIVTVYDKLQEK EEMESQLQERVESSRRAVSQIVTVYDKLQE AVSQIVTVYDKLQEKVELLSRKLNSGDNLI R R A E K V 1 1 0 1 0 2 1 0 0 1 1 2 0 0 0 1 1 0 1 3 0 0 16 2 1876.0418 Q5VTR2 Q5VTR2 183 198 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 3 3.2483E-05 71.601 By MS/MS 1 1.0963 1.2492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0963 1.2492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9327200 4629700 4697500 0 0 0 0 0 0 9327200 4629700 4697500 0 0 0 0 0 0 0 0 0 28161 3112 29630 147921 148941;148942 148942 2 RAYDIAGSTK KMQSLDKDIVALMVRRAYDIAGSTKDVKVF ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R R A T K D 2 1 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 10 1 1080.5564 P11388 P11388 242 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00065069 93.649 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1559 1.2133 26.274 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1723 1.3913 NaN 1 0 Median 1.8443 1.7805 NaN 1 0 Median 0.93543 1.0581 NaN 1 0 Median 1.1397 1.0124 NaN 1 0 Median 8333500 3567200 4766300 0 0 0 0 0 0 865680 385170 480510 208510 69557 138950 4814700 2006100 2808600 2444600 1106400 1338200 28162 1963 29631 147922;147923;147924;147925 148943;148944;148945 148943 3 RAYFDLQTHVIQVPQGK AEFNSNLNRERMEERRAYFDLQTHVIQVPQ YFDLQTHVIQVPQGKYKVLPTERTKVSSYP R R A G K Y 1 1 0 1 0 3 0 1 1 1 1 1 0 1 1 0 1 0 1 2 0 0 17 1 1999.0639 S5FZ81;Q8WUB8 S5FZ81 223 239 PHF10 PHD finger protein 10 yes no 3 6.1002E-06 58.159 By MS/MS By matching 2 1 0.71963 0.80419 41.442 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56418 0.59983 41.462 2 0 Median 1.0616 0.99621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8612500 5130800 3481700 0 0 0 0 0 0 8128700 4880600 3248100 483780 250140 233640 0 0 0 0 0 0 28163 3488 29632 147926;147927;147928 148946;148947;148948 148948 3 RAYGTNYIETLR DGWNQIQFNLLDFTRRAYGTNYIETLRVQI FTRRAYGTNYIETLRVQIHANCRIRRVYFS R R A L R V 1 2 1 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 2 0 0 0 12 1 1455.747 Q9Y6A4 Q9Y6A4 142 153 CFAP20 Cilia- and flagella-associated protein 20 yes yes 3 0.00015143 63.76 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 2 1.2696 1.2738 17.759 6 Median 0.99837 1.0672 NaN 1 0 Median 1.4419 1.2245 NaN 1 0 Median 1.2781 1.3251 NaN 1 0 Median 1.1148 0.99817 NaN 1 0 Median 1.3521 1.4927 12.364 2 0 Median NaN NaN NaN 0 0 Median 29282000 12662000 16620000 10039000 4520800 5518600 1430600 608730 821860 9801900 3986300 5815600 3043300 1307400 1735800 4967100 2239200 2727900 0 0 0 28164 4486 29633 147929;147930;147931;147932;147933;147934 148949;148950;148951;148952 148949 4 RCLYASVLTAQPR DAIHRGGGQIIPTARRCLYASVLTAQPRLM ARRCLYASVLTAQPRLMEPIYLVEIQCPEQ R R C P R L 2 2 0 0 1 1 0 0 0 0 2 0 0 0 1 1 1 0 1 1 0 0 13 1 1533.8086 P13639 P13639 727 739 EEF2 Elongation factor 2 yes yes 3 8.9786E-05 75.102 By MS/MS By MS/MS By MS/MS 2 1 1 0.87323 0.96709 36.22 4 Median 1.1659 1.2443 51.67 2 0 Median 0.81349 0.80485 NaN 1 1 Median 0.93735 1.0831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14611000 7108300 7502700 7553600 3427000 4126600 5572700 3067500 2505100 1484700 613740 870980 0 0 0 0 0 0 0 0 0 28165 1992 29634 147935;147936;147937;147938 148953;148954;148955 148953 3 RDDDEPGPWTK EKGKSGFLVWRYLLRRDDDEPGPWTKEGKD YLLRRDDDEPGPWTKEGKDRIKKLGLTMQY R R D T K E 0 1 0 3 0 0 1 1 0 0 0 1 0 0 2 0 1 1 0 0 0 0 11 1 1314.584 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 595 605 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 0.0014987 61.161 By MS/MS By MS/MS 2 1 0.557 0.57765 6.0425 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.532 0.60511 6.5675 2 2 Median 0.59729 0.56592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6231700 3679200 2552500 0 0 0 0 0 0 4160800 2432600 1728300 2070900 1246700 824230 0 0 0 0 0 0 28166 20 29635 147939;147940;147941 148956;148957;148958 148958 3 RDDGTGQLLLPLSDAR TDERLSYTQLLRRCRRDDGTGQLLLPLSDA DDGTGQLLLPLSDARKLTFRGLRKQITMEE R R D A R K 1 2 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 16 1 1725.901 Q15149;H0YDN1 Q15149 4003 4018 PLEC Plectin yes no 3 0.021027 24.041 By MS/MS By matching 1 1 0.73584 0.74262 23.58 2 Median 0.57842 0.62857 NaN 1 0 Median 0.9361 0.87736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10065000 5849900 4214700 7644500 5032500 2612000 2420200 817410 1602700 0 0 0 0 0 0 0 0 0 0 0 0 28167 2933 29636 147942;147943 148959 148959 0 RDDIEDGDSMISSATSDTGSAK KLQQVMQAKKKELARRDDIEDGDSMISSAT DSMISSATSDTGSAKRKSKKNIRKQRMKIL R R D A K R 2 1 0 5 0 0 1 2 0 2 0 1 1 0 0 5 2 0 0 0 0 0 22 1 2256.9652 Q86U86;E7EVG2;H0Y5B5 Q86U86 490 511 PBRM1 Protein polybromo-1 yes no 3 3.5651E-26 136.02 By MS/MS By MS/MS 2 2 0.8975 0.96567 9.8208 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76058 0.91182 3.3639 2 0 Median 1.0939 1.056 7.8997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27369000 14370000 13000000 0 0 0 0 0 0 21071000 11810000 9261100 6297900 2559400 3738500 0 0 0 0 0 0 28168 3273 29637;29638 147944;147945;147946;147947 148960;148961;148962;148963;148964 148961 1698 5 RDEFEFLEK EIQTLKEEIEQSLTKRDEFEFLEKASKLRG EQSLTKRDEFEFLEKASKLRGISTKPVYIP K R D E K A 0 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 9 1 1211.5823 Q14258;A0A3B3IUA7 Q14258 302 310 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.0082234 56.563 By MS/MS By matching By matching 1 1 1 0.68804 0.4618 45.237 3 Plateau NaN NaN NaN 0 0 Median 1.0331 0.96016 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45822 0.42014 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44779 0.4618 NaN 1 0 Median 9454300 4694300 4760000 0 0 0 7231600 3444200 3787400 0 0 0 2007600 1124400 883290 0 0 0 215050 125780 89271 28169 2870 29639 147948;147949;147950 148965;148966 148965 2 RDELLAQHAAGALGLPDLVAVLTR SVWDVLFSSYLSEARRDELLAQHAAGALGL AGALGLPDLVAVLTRVIEETEERLSKVSFR R R D T R V 5 2 0 2 0 1 1 2 1 0 6 0 0 0 1 0 1 0 0 2 0 0 24 1 2498.3969 P58107;A0A075B730 P58107 2673 2696 EPPK1 Epiplakin yes no 3;4 3.1051E-35 130.43 By MS/MS By MS/MS By matching 3 20 2 1.1597 1.1111 39.696 23 Median 1.0142 1.1021 16.544 3 0 Median 1.1842 1.1778 43.357 19 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0151 0.89749 NaN 1 0 Median 247200000 110150000 137060000 5463100 2530000 2933100 241210000 107190000 134020000 0 0 0 0 0 0 0 0 0 525850 424020 101830 28170 2520 29640 147951;147952;147953;147954;147955;147956;147957;147958;147959;147960;147961;147962;147963;147964;147965;147966;147967;147968;147969;147970;147971;147972;147973;147974;147975 148967;148968;148969;148970;148971;148972;148973;148974;148975;148976;148977;148978;148979;148980;148981;148982;148983 148973 17 RDELTLEGIK MTNKFMTDPIRILVKRDELTLEGIKQFFVA RILVKRDELTLEGIKQFFVAVEREEWKFDT K R D I K Q 0 1 0 1 0 0 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1172.6401 P38919;I3L3H2 P38919 243 252 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 4.1491E-05 143.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 2 1.0763 1.0838 39.797 10 Median 1.1042 1.1015 NaN 1 0 Median 1.1345 1.0672 NaN 1 1 Median 1.0252 1.1029 0.26914 2 1 Median 0.70432 0.59298 91.297 2 0 Median 1.06 1.1134 6.0183 2 1 Median 1.006 0.89474 9.9362 2 0 Median 224240000 101000000 123240000 8174800 3368400 4806400 5979100 2802900 3176300 52435000 24940000 27495000 102630000 44712000 57919000 37469000 17066000 20402000 17550000 8114300 9435900 28171 2278 29641 147976;147977;147978;147979;147980;147981;147982;147983;147984;147985;147986 148984;148985;148986;148987;148988;148989;148990;148991;148992;148993;148994;148995;148996;148997;148998 148994 15 RDEMLGLVPMR KLKSTESELKKKEKRRDEMLGLVPMRQSII KEKRRDEMLGLVPMRQSIIDLKEKEIPELR R R D M R Q 0 2 0 1 0 0 1 1 0 0 2 0 2 0 1 0 0 0 0 1 0 0 11 1 1315.6741 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 726 736 RAD50 DNA repair protein RAD50 yes no 2;3 0.00013417 82.749 By matching By MS/MS 1 2 0.96454 1.1731 26.238 3 Median NaN NaN NaN 0 0 Median 1.6788 1.6185 NaN 1 0 Median 0.87363 1.0625 14 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9499100 5336700 4162500 0 0 0 301480 104250 197230 9197600 5232400 3965200 0 0 0 0 0 0 0 0 0 28172 3561 29642 147987;147988;147989 148999;149000;149001;149002 149002 4 RDFMLITNK GSFLLNFTGCAVCSKRDFMLITNKSLKEED CAVCSKRDFMLITNKSLKEEDGEEIVTYDH K R D N K S 0 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 9 1 1136.6012 B4DL54;H0YJ25;H0YHB4;H0YIM9;H0YID9;H0YIM3;A0A0C4DGJ7;H0YHA3;Q8WUH1 B4DL54 36 44 CHURC1-FNTB;CHURC1 Protein Churchill yes no 2 0.0069306 59.35 By matching By MS/MS 1 1 1.1083 1.0312 24.73 2 Median 1.2525 1.2282 NaN 1 0 Median 0.98059 0.86576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6118400 2881100 3237300 2325700 935740 1390000 3792800 1945400 1847400 0 0 0 0 0 0 0 0 0 0 0 0 28173 597 29643 147990;147991 149003;149004 149004 2 RDFNHINVELSLLGK KGRTVIVKGPRGTLRRDFNHINVELSLLGK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R R D G K K 0 1 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 15 1 1753.9475 D6RAN4;P32969;A0A2R8Y5Y7;E7ESE0 D6RAN4 36 50 RPL9 60S ribosomal protein L9 yes no 3 0.023726 17.917 By MS/MS By matching By matching 1 1 1 1.0985 1.1058 7.7742 3 Median 1.0534 1.1058 NaN 1 0 Median 1.0985 1.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3271 1.208 NaN 1 0 Median 5280400 2377300 2903100 4375600 1960600 2414900 707850 332810 375040 0 0 0 0 0 0 0 0 0 196970 83827 113140 28174 812 29644 147992;147993;147994 149005;149006 149005 2 RDFNHINVELSLLGKK KGRTVIVKGPRGTLRRDFNHINVELSLLGK DFNHINVELSLLGKKKKRLRVDKWWGNRKE R R D K K K 0 1 2 1 0 0 1 1 1 1 3 2 0 1 0 1 0 0 0 1 0 0 16 2 1882.0425 D6RAN4;P32969;A0A2R8Y5Y7;E7ESE0 D6RAN4 36 51 RPL9 60S ribosomal protein L9 yes no 4 0.037996 20.737 By MS/MS 1 1.2596 1.3413 NaN 1 Median 1.2596 1.3413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9020000 5068800 3951200 9020000 5068800 3951200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28175 812 29645 147995 149007 149007 0 RDFTPAELR DSDDDEPPPLPRLKRRDFTPAELRRFDGVQ LPRLKRRDFTPAELRRFDGVQDPRILMAIN R R D L R R 1 2 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 9 1 1103.5724 O00264 O00264 71 79 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.00045701 107.57 By MS/MS By MS/MS By MS/MS 1 1 1 5.6661 6.0567 130.23 3 Median 5.6661 6.0567 NaN 1 1 Median 9.0058 7.6483 NaN 1 1 Median 0.69423 0.71981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64575000 8418600 56156000 43123000 4250600 38873000 19025000 2856400 16169000 2426300 1311700 1114600 0 0 0 0 0 0 0 0 0 28176 1451 29646 147996;147997;147998 149008;149009;149010 149008 3 RDGEAQEAASETQPLSSPPTAASSK EPTCSQEGKLRPEPRRDGEAQEAASETQPL ETQPLSSPPTAASSKAPSSGSAQPPEGHPG R R D S K A 5 1 0 1 0 2 3 1 0 0 1 1 0 0 3 5 2 0 0 0 0 0 25 1 2514.1834 A0A087WWW8;Q9Y6J0;B5MEB3 A0A087WWW8 2028 2052 CABIN1 Calcineurin-binding protein cabin-1 yes no 3 5.5029E-13 62.582 By MS/MS By MS/MS 1 1 0.50558 0.54392 8.2874 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42786 0.51296 NaN 1 1 Median 0.59742 0.57674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6661300 4484700 2176600 0 0 0 0 0 0 4846100 3348400 1497700 1815200 1136300 678870 0 0 0 0 0 0 28177 64 29647 147999;148000 149011;149012 149012 2 RDHALLEEQSK IINSKWEKVQQLVPKRDHALLEEQSKQQSN LVPKRDHALLEEQSKQQSNEHLRRQFASQA K R D S K Q 1 1 0 1 0 1 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1324.6735 O43707;F5GXS2;H7C144 O43707 633 643 ACTN4 Alpha-actinin-4 yes no 2;3 3.4661E-05 114.02 By MS/MS By MS/MS 4 5 0.97121 0.97683 14.911 9 Median 1.1712 1.212 10.588 4 1 Linear 0.89911 0.88595 9.595 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30140000 14592000 15548000 3038000 1357200 1680800 27102000 13235000 13867000 0 0 0 0 0 0 0 0 0 0 0 0 28178 1585 29648 148001;148002;148003;148004;148005;148006;148007;148008;148009 149013;149014;149015;149016;149017;149018;149019;149020;149021;149022 149020 10 RDHFEEAMR SAMEVEEDDPVPEIRRDHFEEAMRFARRSV PVPEIRRDHFEEAMRFARRSVSDNDIRKYE R R D M R F 1 2 0 1 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 9 1 1189.5298 P55072 P55072 733 741 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 0.00073221 81.338 By MS/MS By MS/MS 1 2 1.2844 1.2708 NaN 1 Median NaN NaN NaN 0 0 Median 1.2844 1.2708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8280300 1491500 6788800 994040 0 994040 7286300 1491500 5794700 0 0 0 0 0 0 0 0 0 0 0 0 28179 2494 29649 148010;148011;148012 149023;149024;149025;149026 149026 4 RDHPLPEVAHVK VVKSEDFSLPAYMDRRDHPLPEVAHVKHLS MDRRDHPLPEVAHVKHLSASQKALKEKEKA R R D V K H 1 1 0 1 0 0 1 0 2 0 1 1 0 0 2 0 0 0 0 2 0 0 12 1 1396.7575 P13073;H3BPG0;H3BN72;H3BNV9;Q86WV2 P13073 42 53 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 3 0.0093989 26.532 By MS/MS By matching 2 1 1.0464 0.92385 24.158 3 Plateau NaN NaN NaN 0 0 Median 0.95822 0.84558 12.52 2 0 Median 0.54588 0.57289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2148100 1063400 1084700 0 0 0 1596600 720480 876160 551480 342890 208590 0 0 0 0 0 0 0 0 0 28180 1988 29650 148013;148014;148015 149027;149028;149029 149029 3 RDHVFEDSYR LDEGLRKEDMAVHVRRDHVFEDSYRELHRK AVHVRRDHVFEDSYRELHRKSPEEMKNRLY R R D Y R E 0 2 0 2 0 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 10 1 1322.6004 Q7Z6Z7;H0Y659 Q7Z6Z7 4023 4032 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 3 0.0081446 48.741 By MS/MS By MS/MS 2 2 1.0147 1.0159 17.46 4 Median 0.8677 0.9354 14.642 2 1 Median 1.1639 1.1323 18.308 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7175700 3309500 3866200 2137900 1121900 1016100 5037800 2187600 2850200 0 0 0 0 0 0 0 0 0 0 0 0 28181 3253 29651 148016;148017;148018;148019 149030;149031;149032;149033 149032 2 RDIQENDEEAVQVK TDREASIDILHSIVKRDIQENDEEAVQVKE KRDIQENDEEAVQVKEQSILELGSLLAKTG K R D V K E 1 1 1 2 0 2 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 14 1 1671.8064 O00231;J3QRY4 O00231 33 46 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 3 0.0032282 45.863 By MS/MS 1 2.012 1.8763 NaN 1 Median NaN NaN NaN 0 0 Median 2.012 1.8763 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 944390 289620 654780 0 0 0 944390 289620 654780 0 0 0 0 0 0 0 0 0 0 0 0 28182 1448 29652 148020 149034 149034 1 RDLALVNDQLLGFVR AIRHDVIVTIITAAKRDLALVNDQLLGFVR RDLALVNDQLLGFVRERTLDKRWRVRKEAM K R D V R E 1 2 1 2 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 2 0 0 15 1 1727.9683 Q29RF7 Q29RF7 390 404 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.065979 16.744 By MS/MS 1 0.92772 1.1283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92772 1.1283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1046200 584190 461980 0 0 0 0 0 0 1046200 584190 461980 0 0 0 0 0 0 0 0 0 28183 3003 29653 148021 149035 149035 1 RDLEGSDIDTR ADEEAFEDNSEEYIRRDLEGSDIDTRRRAA EYIRRDLEGSDIDTRRRAACDLVRGLCKFF R R D T R R 0 2 0 3 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1275.6055 P55060 P55060 372 382 CSE1L Exportin-2 yes yes 2;3 0.018225 34.264 By MS/MS By matching By matching By matching 2 1 1 1 1.1696 1.2402 5.1289 4 Median 1.0453 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2141 1.2588 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1267 1.2219 NaN 1 0 Median 1.4915 1.3118 NaN 1 0 Median 5866400 2768400 3098000 1584300 856700 727570 0 0 0 1825400 860940 964470 0 0 0 1075400 504560 570800 1381300 546190 835150 28184 2493 29654 148022;148023;148024;148025;148026 149036;149037;149038 149038 3 RDNELIGQTVR SPGGGSGGMSRGRGRRDNELIGQTVRISQG GRGRRDNELIGQTVRISQGPYKGYIGVVKD R R D V R I 0 2 1 1 0 1 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 1 1299.6895 O00267 O00267 701 711 SUPT5H Transcription elongation factor SPT5 yes yes 2;3 0.00037495 102.52 By MS/MS By MS/MS 2 1 0.90862 1.1051 17.596 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90862 1.1051 17.596 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5260700 2852500 2408200 0 0 0 0 0 0 5260700 2852500 2408200 0 0 0 0 0 0 0 0 0 28185 1452 29655 148027;148028;148029 149039;149040;149041 149040 3 RDNNELLLFILK MRSMRKTFARYLSFRRDNNELLLFILKQLV SFRRDNNELLLFILKQLVAEQVTYQRNRFG R R D L K Q 0 1 2 1 0 0 1 0 0 1 4 1 0 1 0 0 0 0 0 0 0 0 12 1 1486.8508 P49736;H0Y8E6 P49736 826 837 MCM2 DNA replication licensing factor MCM2 yes no 2 0.00196 53.683 By MS/MS By matching 1 1 0.84868 0.88311 22.221 2 Median NaN NaN NaN 0 0 Median 1.0973 1.0334 NaN 1 0 Median 0.6564 0.7547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3716100 1596700 2119400 0 0 0 3501300 1493700 2007700 214780 103010 111770 0 0 0 0 0 0 0 0 0 28186 2393 29656 148030;148031 149042;149043 149042 2 RDPALNSGVSQKPDPAK STTGAKKRAAPKGTKRDPALNSGVSQKPDP PALNSGVSQKPDPAKTKNRRKRKPSTSDDS K R D A K T 2 1 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 17 2 1778.9275 P11388 P11388 1443 1459 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.00014848 42.913 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.66599 0.72867 5.5756 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52444 0.69288 NaN 1 0 Median 0.70664 0.79093 NaN 1 0 Median 0.62769 0.73792 NaN 1 0 Median 0.74965 0.71955 NaN 1 0 Median 6760800 3922000 2838800 0 0 0 0 0 0 3145400 1970200 1175100 656220 344330 311890 1946100 1069200 876890 1013100 538180 474940 28187 1963 29657 148032;148033;148034;148035 149044;149045;149046;149047;149048;149049;149050 149046 7 RDPEEDGMMK AVAAGEFLYKKLFSRRDPEEDGMMKRRGRQ KLFSRRDPEEDGMMKRRGRQGPNANLVKTL R R D M K R 0 1 0 2 0 0 2 1 0 0 0 1 2 0 1 0 0 0 0 0 0 0 10 1 1206.5009 Q8N3U4;B1AMT4 Q8N3U4 440 449 STAG2 Cohesin subunit SA-2 yes no 2 0.0022797 64.04 By MS/MS By matching By matching 1 1 1 0.9887 0.95016 8.3146 3 Median NaN NaN NaN 0 0 Median 1.0851 1.0277 NaN 1 0 Median 0.76081 0.87034 NaN 1 0 Median 0.9887 0.95016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3347800 1673800 1674000 0 0 0 2187500 987820 1199600 863370 528610 334760 296970 157370 139600 0 0 0 0 0 0 28188 3369 29658 148036;148037;148038 149051 149051 1 RDPHLACVAYER NPYYDSRVVGKYCEKRDPHLACVAYERGQC CEKRDPHLACVAYERGQCDLELINVCNENS K R D E R G 2 2 0 1 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 12 1 1485.7147 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 916 927 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 3 0.00022961 58.752 By MS/MS 1 0.97239 0.98195 NaN 1 Median NaN NaN NaN 0 0 Median 0.97239 0.98195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4648400 2520700 2127700 0 0 0 4648400 2520700 2127700 0 0 0 0 0 0 0 0 0 0 0 0 28189 44 29659 148039 149052;149053 149052 2 RDPTEEIEILLR ATNMEFAVKIIDKSKRDPTEEIEILLRYGQ KSKRDPTEEIEILLRYGQHPNIITLKDVYD K R D L R Y 0 2 0 1 0 0 3 0 0 2 2 0 0 0 1 0 1 0 0 0 0 0 12 1 1482.8042 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 429 440 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0030905 49.368 By MS/MS 2 1.027 0.98718 0.60195 2 Median NaN NaN NaN 0 0 Median 1.027 0.98718 0.60195 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3797900 2051800 1746100 0 0 0 3797900 2051800 1746100 0 0 0 0 0 0 0 0 0 0 0 0 28190 581 29660 148040;148041 149054;149055 149055 2 RDPTLLVSVVR KQLWMVLQRSLVTVRRDPTLLVSVVRIIER VTVRRDPTLLVSVVRIIEREEKIDRRILDR R R D V R I 0 2 0 1 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 3 0 0 11 1 1253.7456 O60645;D6RB59;H0Y995 O60645 204 214 EXOC3 Exocyst complex component 3 yes no 2 0.060076 27.115 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 1.1446 1.13 18.25 6 Median 0.88876 0.91124 NaN 1 0 Median 1.4069 1.392 NaN 1 0 Median 0.75443 0.84188 NaN 1 0 Median 1.3066 1.1577 NaN 1 0 Median 1.0738 1.1667 NaN 1 0 Median 1.2201 1.103 NaN 1 0 Median 9774600 4774300 5000300 3478800 2064000 1414900 612990 220140 392840 3115800 1657900 1458000 705150 190340 514810 1214400 414170 800230 647400 227790 419610 28191 1623 29661 148042;148043;148044;148045;148046;148047 149056 149056 1 RDPVALEDVYPIHMILENK RYEEIDLETGILESRRDPVALEDVYPIHMI ALEDVYPIHMILENKDGIQGSCRYFKERKN R R D N K D 1 1 1 2 0 0 2 0 1 2 2 1 1 0 2 0 0 0 1 2 0 0 19 1 2251.1671 Q12789 Q12789 89 107 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.00063725 29.126 By MS/MS 1 0.3618 0.43289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3618 0.43289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3910400 2975800 934560 0 0 0 0 0 0 3910400 2975800 934560 0 0 0 0 0 0 0 0 0 28192 2758 29662 148048 149057 149057 1 RDQALTEEHAR EINGKWDHVRQLVPRRDQALTEEHARQQHN LVPRRDQALTEEHARQQHNERLRKQFGAQA R R D A R Q 2 2 0 1 0 1 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 11 1 1324.6484 P12814;H9KV75;H0YJ11 P12814 614 624 ACTN1 Alpha-actinin-1 yes no 3 0.00049725 55.452 By MS/MS By MS/MS By matching 2 2 1 1.1446 1.2486 13.904 5 Median 1.2775 1.3634 9.8555 2 0 Median 1.1344 1.1079 15.599 2 0 Median 1.0806 1.2486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3690800 1743800 1947000 620870 278800 342070 3002800 1435100 1567700 67175 29948 37227 0 0 0 0 0 0 0 0 0 28193 1983 29663 148049;148050;148051;148052;148053 149058;149059;149060;149061;149062;149063 149063 6 RDQDNMQAELNR KTQMLDQEELLASTRRDQDNMQAELNRLQA STRRDQDNMQAELNRLQAENDASKEEVKEV R R D N R L 1 2 2 2 0 2 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 12 1 1488.6739 P33176 P33176 465 476 KIF5B Kinesin-1 heavy chain yes yes 2;3 1.3008E-06 121.83 By MS/MS By MS/MS 2 2 1.0224 1.0581 9.7607 4 Median 0.92 1.0221 13.527 2 2 Median 1.103 1.0634 9.3379 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16696000 7827900 8868400 4752900 2181200 2571700 11943000 5646700 6296600 0 0 0 0 0 0 0 0 0 0 0 0 28194 2221 29664 148054;148055;148056;148057 149064;149065;149066;149067;149068;149069 149067 6 RDTALETALNAK NFQRQLRQEVVVCMRRDTALETALNAKAYK CMRRDTALETALNAKAYKRSKRQSLREARI R R D A K A 3 1 1 1 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 12 1 1301.6939 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8Y4C5;A0A2R8YGP5 P51532 426 437 SMARCA4 Transcription activator BRG1 yes no 2 9.4106E-11 138.22 By MS/MS 1 0.65509 0.78534 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65509 0.78534 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9451800 5582200 3869600 0 0 0 0 0 0 9451800 5582200 3869600 0 0 0 0 0 0 0 0 0 28195 366 29665 148058 149070 149070 1 RDTVEVALEDKGDSTFR GTGDVAVVIVDPQGRRDTVEVALEDKGDST TVEVALEDKGDSTFRCTYRPAMEGPHTVHV R R D F R C 1 2 0 3 0 0 2 1 0 0 1 1 0 1 0 1 2 0 0 2 0 0 17 2 1936.949 Q14315 Q14315 421 437 FLNC Filamin-C yes yes 3 5.4332E-13 123.59 By MS/MS By MS/MS By matching 2 1 1 1.1142 1.1423 13.629 4 Median 1.2775 1.2674 12.124 2 0 Median 1.0295 0.99274 NaN 1 0 Median 0.93555 1.1216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62155000 28387000 33768000 42060000 18547000 23513000 15245000 7421400 7823300 4850300 2419400 2430900 0 0 0 0 0 0 0 0 0 28196 2871 29666 148059;148060;148061;148062 149071;149072;149073;149074 149072 3 RDVDFELIKVEGK EIAVNAVLTVADMERRDVDFELIKVEGKVG ERRDVDFELIKVEGKVGGRLEDTKLIKGVI R R D G K V 0 1 0 2 0 0 2 1 0 1 1 2 0 1 0 0 0 0 0 2 0 0 13 2 1546.8355 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 202 214 CCT5 T-complex protein 1 subunit epsilon yes no 3 7.2179E-06 94.09 By MS/MS By matching 1 1 0.70427 0.71469 52.014 2 Median 0.95367 1.0324 NaN 1 0 Median 0.52009 0.49475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13764000 6055000 7709000 12989000 5540300 7449100 774600 514680 259920 0 0 0 0 0 0 0 0 0 0 0 0 28197 2364 29667 148063;148064 149075;149076 149076 2 RDVQEIFR ILDECDKMLEQLDMRRDVQEIFRMTPHEKQ LEQLDMRRDVQEIFRMTPHEKQVMMFSATL R R D F R M 0 2 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 8 1 1061.5618 O00148;K7EQN7;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4 Q13838 209 216 DDX39A;DDX39B ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2 5.2216E-05 113.62 By MS/MS By MS/MS 1 1 1.0271 0.94206 23.567 2 Median NaN NaN NaN 0 0 Median 1.2341 1.1129 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85493 0.79745 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118720000 63852000 54863000 0 0 0 5083200 2274500 2808800 0 0 0 113630000 61578000 52055000 0 0 0 0 0 0 28198 2842;1441 29668 148065;148066 149077;149078 149078 2 RDYDDMSPR RMPPGRGGRPMPPSRRDYDDMSPRRGPPPP PMPPSRRDYDDMSPRRGPPPPPPGRGGRGG R R D P R R 0 2 0 3 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 9 1 1153.4822 P61978;Q5T6W2 P61978 278 286 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 0.0006458 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 0.99884 0.99847 8.4995 9 Median 0.89025 0.8771 NaN 1 0 Median 1.1801 1.0642 NaN 1 0 Median 0.83362 0.90036 NaN 1 0 Median 1.1254 1.0128 2.0185 2 0 Median 0.85919 0.93125 13.12 2 0 Median 1.0724 0.94565 9.6812 2 0 Median 32234000 17426000 14808000 2677000 1483200 1193800 2034500 787440 1247000 11568000 6346300 5221800 3170600 1468400 1702200 10635000 6337900 4297400 2148200 1002400 1145900 28199 2565;3093 29669 148067;148068;148069;148070;148071;148072;148073;148074;148075 149079;149080;149081;149082;149083;149084;149085;149086;149087 149081 8 RDYLHYIR GVVTKMKMQRTIVIRRDYLHYIRKYNRFEK QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R R D I R K 0 2 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 8 1 1134.5934 M0QZC5;P62280;M0R1H5 M0QZC5 90 97 RPS11 40S ribosomal protein S11 yes no 2 0.0050906 87.476 By MS/MS By matching 1 1 0.95164 0.92518 18.631 2 Median 0.98739 1.0555 NaN 1 0 Median 0.91719 0.81099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19402000 9637100 9764900 16488000 8028500 8459900 2913700 1608700 1305000 0 0 0 0 0 0 0 0 0 0 0 0 28200 1422 29670 148076;148077 149088;149089 149089 2 REAPVDVLTQIGR LAQSRRDFAPPGQQKREAPVDVLTQIGRSV QKREAPVDVLTQIGRSVRGTLDAWIGPETM K R E G R S 1 2 0 1 0 1 1 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 13 1 1452.8049 Q9BVC6 Q9BVC6 47 59 TMEM109 Transmembrane protein 109 yes yes 2;3 3.4617E-05 93.623 By MS/MS By matching By MS/MS 3 1 2 1.0059 1.0674 4.9089 6 Median 1.0323 1.082 5.5974 3 2 Plateau 1.2216 1.1176 NaN 1 0 Median 1.0059 1.0674 1.9023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27239000 13809000 13430000 16444000 8411200 8033100 836210 394600 441610 9959000 5003400 4955600 0 0 0 0 0 0 0 0 0 28201 3851 29671 148078;148079;148080;148081;148082;148083 149090;149091;149092;149093;149094;149095 149090 6 REDESYGYVLPNHMMLK TAFQLLFAWRDKTARREDESYGYVLPNHMM DESYGYVLPNHMMLKIAEELPKEPQGIIAC R R E L K I 0 1 1 1 0 0 2 1 1 0 2 1 2 0 1 1 0 0 2 1 0 0 17 1 2080.971 Q01780 Q01780 523 539 EXOSC10 Exosome component 10 yes yes 3 5.076E-06 73.498 By MS/MS 1 0.86261 0.97753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86261 0.97753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12868000 6814700 6053400 0 0 0 0 0 0 12868000 6814700 6053400 0 0 0 0 0 0 0 0 0 28202 2691 29672 148084 149096;149097 149097 2 REDKELYTVVQHVK PTQPYQDIVTALKCRREDKELYTVVQHVKH RREDKELYTVVQHVKHFNDVVEFGENQEFT R R E V K H 0 1 0 1 0 1 2 0 1 0 1 2 0 0 0 0 1 0 1 3 0 0 14 2 1742.9315 Q7Z5K2 Q7Z5K2 627 640 WAPAL Wings apart-like protein homolog yes yes 4 0.0002316 61.415 By MS/MS By matching 1 1 0.96139 1.0956 8.2121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90723 1.0338 NaN 1 0 Median 1.0188 1.1611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11594000 5639500 5954100 0 0 0 0 0 0 9094200 4204200 4890000 2499400 1435300 1064100 0 0 0 0 0 0 28203 3249 29673 148085;148086 149098 149098 1 REDLVEEIK IKLRSVTSREEVDVRREDLVEEIKRRTGQP EEVDVRREDLVEEIKRRTGQPLCIC_____ R R E I K R 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1129.5979 P12081;B3KWE1;B4DDD8;B4E1C5 P12081 491 499 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.0022419 85.731 By MS/MS By MS/MS By MS/MS 1 1 1 0.96734 1.0336 16.057 3 Median NaN NaN NaN 0 0 Median 0.87985 0.80297 NaN 1 1 Median 0.96734 1.0819 NaN 1 1 Median 1.1014 1.0336 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29268000 13683000 15585000 0 0 0 7636300 3950600 3685700 5588400 2560200 3028200 16043000 7172100 8871200 0 0 0 0 0 0 28204 1975 29674 148087;148088;148089 149099;149100;149101 149100 3 REDLVEEIKR IKLRSVTSREEVDVRREDLVEEIKRRTGQP EVDVRREDLVEEIKRRTGQPLCIC______ R R E K R R 0 2 0 1 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 2 1285.699 P12081;B3KWE1;B4DDD8;B4E1C5 P12081 491 500 HARS Histidine--tRNA ligase, cytoplasmic yes no 2;3 0.00012579 79.82 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.0625 1.1825 8.3925 5 Median 1.0625 1.1825 NaN 1 0 Median 1.0468 1.2554 NaN 1 0 Median 1.0884 1.214 15.733 2 1 Median 1.1211 1.1627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21381000 9491600 11890000 2337200 971150 1366000 3396800 1488000 1908800 5048200 2050000 2998200 10599000 4982500 5616500 0 0 0 0 0 0 28205 1975 29675 148090;148091;148092;148093;148094;148095 149102;149103;149104;149105;149106;149107 149106 6 REDLVVAPAGITLK KEEEHDCFLEEIMTKREDLVVAPAGITLKE KREDLVVAPAGITLKEANEILQRSKKGKLP K R E L K E 2 1 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 14 1 1480.8613 P12268;H0Y4R1;E7ETK5 P12268 182 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2;3 1.8904E-05 126.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 3 2 2 1 1 1.0931 1.005 48.547 13 Median 0.93035 0.92648 78.825 4 0 Median 1.0831 0.98817 8.8097 3 0 Median 0.97119 1.0833 16.694 2 0 Median 1.5386 1.4438 16.376 2 0 Median 1.1624 1.2047 NaN 1 0 Median 1.191 1.1042 NaN 1 0 Median 60347000 31940000 28407000 37519000 20960000 16559000 14203000 6841800 7361400 6101400 3165000 2936300 1309600 543830 765790 1096900 378840 718070 117450 50422 67029 28206 1148 29676 148096;148097;148098;148099;148100;148101;148102;148103;148104;148105;148106;148107;148108 149108;149109;149110;149111;149112;149113;149114;149115 149110 8 REDYLYAVR LYITAFFFAGYYLVKREDYLYAVRDREMFG GYYLVKREDYLYAVRDREMFGYMKLHPEDF K R E V R D 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 9 1 1183.5986 O95298;E9PM14;A0A087WUM3;E9PQ53 O95298 77 85 NDUFC2;KCTD14;NDUFC2-KCTD14 NADH dehydrogenase [ubiquinone] 1 subunit C2;NADH dehydrogenase [ubiquinone] 1 subunit C2, isoform 2 yes no 2;3 0.0009952 103.7 By MS/MS By MS/MS 2 1 1.007 0.92876 46.768 2 Median 0.66876 0.66724 NaN 1 1 Median 1.5163 1.2928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14066000 5765700 8299900 5785900 2629200 3156600 8279700 3136400 5143300 0 0 0 0 0 0 0 0 0 0 0 0 28207 1762 29677 148109;148110;148111 149116;149117;149118 149118 3 REEEEDFIR PNWMNMAQPKQLRPKREEEEDFIRAAFGKE KQLRPKREEEEDFIRAAFGKESEVLIGNLG K R E I R A 0 2 0 1 0 0 4 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 9 1 1221.5626 Q96A65 Q96A65 668 676 EXOC4 Exocyst complex component 4 yes yes 2 0.011191 72.547 By MS/MS By MS/MS By MS/MS 1 1 1 1.2536 1.2974 39.722 2 Median 0.88181 0.97971 NaN 1 0 Median 1.7822 1.7182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5696500 2333100 3363400 2212100 983570 1228500 3484400 1349500 2134900 0 0 0 0 0 0 0 0 0 0 0 0 28208 3595 29678 148112;148113;148114 149119;149120;149121;149122 149120 4 REEEEFNTGPLSVLTQSVK LNKPKSEMTPEELQKREEEEFNTGPLSVLT EFNTGPLSVLTQSVKNNTQVLINCRNNKKL K R E V K N 0 1 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 19 1 2162.0855 P62316;K7ERG4 P62316 19 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2;3 1.2852E-60 228.9 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 4 0.91327 0.85236 11 11 Median 0.77336 0.76731 NaN 1 0 Median 1.0637 0.93795 NaN 1 0 Median 0.83404 0.85478 2.8297 3 0 Plateau NaN NaN NaN 0 0 Median 0.8805 0.99234 4.7704 2 0 Median 0.9781 0.78117 11.579 4 0 Median 328060000 173390000 154670000 3880900 2154500 1726400 534440 254150 280290 292010000 154530000 137480000 0 0 0 17537000 9503300 8033900 14091000 6940400 7150700 28209 2586 29679 148115;148116;148117;148118;148119;148120;148121;148122;148123;148124;148125 149123;149124;149125;149126;149127;149128;149129;149130;149131;149132;149133;149134;149135;149136;149137;149138;149139;149140;149141;149142;149143;149144;149145;149146;149147;149148;149149 149140 27 REEEEQQEGGFASPR LEALANREREKENSKREEEEQQEGGFASPR REEEEQQEGGFASPRTGKGKWKRKSAGGGP K R E P R T 1 2 0 0 0 2 5 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 15 1 1747.7762 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 640 654 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3 8.689E-05 59.261 By MS/MS By MS/MS 1 1 0.68316 0.69127 0.5357 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59599 0.68866 NaN 1 0 Median 0.78309 0.69389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6938100 4105500 2832500 0 0 0 0 0 0 4134900 2612800 1522100 2803200 1492800 1310400 0 0 0 0 0 0 28210 20 29680 148126;148127 149150;149151;149152;149153 149152 4 REEEFDLFMR DEVPDDETLNQMIARREEEFDLFMRMDMDR QMIARREEEFDLFMRMDMDRRREDARNPKR R R E M R M 0 2 0 1 0 0 3 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 10 1 1370.6289 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6 P51531 1246 1255 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.0099804 57.598 By MS/MS 2 0.87234 1.102 10.378 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87234 1.102 10.378 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12211000 6197400 6013500 0 0 0 0 0 0 12211000 6197400 6013500 0 0 0 0 0 0 0 0 0 28211 2433 29681 148128;148129 149154;149155 149155 2 REEELREYQER MLKEREERERAERAKREEELREYQERVKKL ERAKREEELREYQERVKKLEEVERKKRQRE K R E E R V 0 3 0 0 0 1 5 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 11 2 1535.7328 Q14152 Q14152 837 847 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.033358 22.198 By MS/MS 1 0.89428 0.99675 NaN 1 Median 0.89428 0.99675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1364500 664270 700240 1364500 664270 700240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28212 2860 29682 148130 149156;149157 149156 2 REEEMMIR KRKEMQLRQEEERRRREEEMMIRQREMEEQ QEEERRRREEEMMIRQREMEEQMRRQREES R R E I R Q 0 2 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 8 1 1092.5056 P23246;H0Y9K7 P23246 574 581 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.0071022 78.334 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.2739 1.1689 15.898 4 Median NaN NaN NaN 0 0 Median 1.578 1.5612 NaN 1 0 Median 0.99654 1.1515 NaN 1 0 Median 1.2362 1.0954 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3127 1.1866 NaN 1 0 Median 12481000 5592000 6888900 0 0 0 2593100 1061400 1531700 4670200 2245600 2424700 4017300 1757600 2259700 0 0 0 1200200 527390 672780 28213 2107 29683 148131;148132;148133;148134 149158;149159;149160;149161;149162;149163 149161 6 REEFVSIK FRQHVTTLRETKASRREEFVSIKRQIILCM RETKASRREEFVSIKRQIILCMEALDHTPD R R E I K R 0 1 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 1 1006.5447 O43663;H0YM42 O43663 171 178 PRC1 Protein regulator of cytokinesis 1 yes no 2 0.009263 70.919 By matching By matching By MS/MS 1 1 2 1.2649 1.1769 27.268 4 Median NaN NaN NaN 0 0 Median 1.444 1.3634 NaN 1 0 Median 0.73326 0.77825 NaN 1 0 Median 1.2758 1.1834 21.591 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10216000 5084900 5130700 0 0 0 3203500 1508200 1695300 3852100 2100900 1751200 3160000 1475800 1684300 0 0 0 0 0 0 28214 1581 29684 148135;148136;148137;148138 149164;149165;149166 149164 3 REELAPYPK DKADREEGKERRHHRREELAPYPKSKKAVS ERRHHRREELAPYPKSKKAVSRKDEELDPM R R E P K S 1 1 0 0 0 0 2 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 9 1 1101.5819 O60828 O60828 181 189 PQBP1 Polyglutamine-binding protein 1 yes yes 2 0.026861 40.352 By MS/MS 1 0.94497 0.89178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94497 0.89178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2375300 1288500 1086900 0 0 0 0 0 0 0 0 0 2375300 1288500 1086900 0 0 0 0 0 0 28215 1633 29685 148139 149167 149167 1 REELFIEQK TVRRDKTLLKEKRKRREELFIEQKKRKLLP KEKRKRREELFIEQKKRKLLPDTILEKLTT R R E Q K K 0 1 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1190.6295 Q9UMY1;H7C2B1 Q9UMY1 101 109 NOL7 Nucleolar protein 7 yes no 2 0.0099875 62.546 By MS/MS 1 0.80781 0.87673 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80781 0.87673 NaN 1 1 Median NaN NaN NaN 0 0 Median 5842900 3435100 2407700 0 0 0 0 0 0 0 0 0 0 0 0 5842900 3435100 2407700 0 0 0 28216 4338 29686 148140 149168 149168 1 REELFIVSK VGVAIQEKLREQVVKREELFIVSKLWCTYH REQVVKREELFIVSKLWCTYHEKGLVKGAC K R E S K L 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 9 1 1119.6288 P15121;E9PCX2;E9PEF9 P15121 70 78 AKR1B1 Aldose reductase yes no 2 0.0022182 80.165 By MS/MS By MS/MS By MS/MS 1 1 1 1.0606 1.0784 4.7523 3 Plateau 1.0606 1.0784 NaN 1 0 Median 1.2139 1.0699 NaN 1 0 Median 0.90914 0.98955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84498000 38779000 45719000 54124000 25214000 28910000 25780000 11271000 14509000 4593200 2293200 2300000 0 0 0 0 0 0 0 0 0 28217 2015 29687 148141;148142;148143 149169;149170;149171;149172;149173 149170 5 REELITNWEQIR LQQSHPLSATQIQVKREELITNWEQIRTLA QVKREELITNWEQIRTLAAERHARLNDSYR K R E I R T 0 2 1 0 0 1 3 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 12 1 1585.8213 A0A0D9SF54;Q13813 Q13813 336 347 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 5.571E-30 206.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 5 4 4 2 0.97709 1.0714 47.262 21 Median 1.3774 1.473 2.3372 3 0 Median 1.3142 1.2318 14.225 3 0 Median 0.94097 1.0803 22.978 5 0 Median 1.0114 0.92907 27.379 4 0 Median 0.94388 1.0102 8.6052 4 0 Median 0.4806 0.41484 128.07 2 0 Median 195890000 90910000 104980000 42405000 17747000 24658000 42610000 17322000 25289000 88807000 44592000 44214000 3237300 1709000 1528300 18216000 9100900 9115500 615830 439780 176050 28218 264;2838 29688 148144;148145;148146;148147;148148;148149;148150;148151;148152;148153;148154;148155;148156;148157;148158;148159;148160;148161;148162;148163;148164 149174;149175;149176;149177;149178;149179;149180;149181;149182;149183;149184;149185;149186;149187;149188;149189;149190;149191 149178 18 REELSNVLAAMR FIKKRVGTHIRAKRKREELSNVLAAMRKAA KRKREELSNVLAAMRKAAAKKD________ K R E M R K 2 2 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 1 1387.7242 Q9Y3U8 Q9Y3U8 87 98 RPL36 60S ribosomal protein L36 yes yes 2;3 5.5964E-05 149.96 By MS/MS By matching By matching By matching 2 1 1 4 1.2709 1.1962 45.333 8 Median 0.93918 0.98443 19.334 2 0 Median 1.3679 1.2514 NaN 1 0 Median 1.0529 1.1434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5651 1.3338 58.986 4 0 Median 30276000 14324000 15952000 19463000 9910500 9552400 227460 94362 133100 2661500 1213200 1448400 0 0 0 0 0 0 7924300 3105800 4818500 28219 4434 29689 148165;148166;148167;148168;148169;148170;148171;148172 149192;149193;149194 149192 3 REESLEKEPEYVPWTATSGPGGIR QAASHYRQNRNSLYRREESLEKEPEYVPWT EYVPWTATSGPGGIRTVIIRQHEIVLKVAY R R E I R T 1 2 0 0 0 0 5 3 0 1 1 1 0 0 3 2 2 1 1 1 0 0 24 2 2687.3191 Q8WUM0 Q8WUM0 752 775 NUP133 Nuclear pore complex protein Nup133 yes yes 3;4 7.0293E-19 85.013 By MS/MS 2 0.57664 0.65007 4.8399 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57664 0.65007 4.8399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24049000 15097000 8951800 0 0 0 0 0 0 24049000 15097000 8951800 0 0 0 0 0 0 0 0 0 28220 3492 29690 148173;148174 149195;149196;149197;149198 149197 4 REESPMDVDQPSPSAQDTQSIASDGTPQGEK QAATSESSQSEASVRREESPMDVDQPSPSA DTQSIASDGTPQGEKEKEERPPELPLLSEQ R R E E K E 2 1 0 4 0 4 3 2 0 1 0 1 1 0 4 5 2 0 0 1 0 0 31 1 3286.4532 Q7Z6Z7;H0Y659 Q7Z6Z7 3805 3835 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 3 6.3054E-22 72.292 By MS/MS By MS/MS 1 2 0.43922 0.4188 14.004 3 Median 0.3877 0.40111 NaN 1 0 Median 0.4958 0.46705 15.42 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15954000 10649000 5304500 7958800 5678100 2280800 7995000 4971300 3023700 0 0 0 0 0 0 0 0 0 0 0 0 28221 3253 29691 148175;148176;148177 149199;149200 149199 2 REFEVYGPIK FVARVNYDTTESKLRREFEVYGPIKRIHMV ESKLRREFEVYGPIKRIHMVYSKRSGKPRG R R E I K R 0 1 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 10 1 1236.6503 P08621;M0QYR1 P08621 121 130 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.0324 36.334 By MS/MS 1 0.86821 0.98303 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86821 0.98303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94790000 49892000 44897000 0 0 0 0 0 0 94790000 49892000 44897000 0 0 0 0 0 0 0 0 0 28222 1905 29692 148178 149201 149201 1 REFEVYGPIKR FVARVNYDTTESKLRREFEVYGPIKRIHMV SKLRREFEVYGPIKRIHMVYSKRSGKPRGY R R E K R I 0 2 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 11 2 1392.7514 P08621;M0QYR1 P08621 121 131 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 3 0.02715 58.172 By MS/MS 1 0.53483 0.56859 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53483 0.56859 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10463000 6709900 3753200 0 0 0 0 0 0 10463000 6709900 3753200 0 0 0 0 0 0 0 0 0 28223 1905 29693 148179 149202 149202 1 REGGDGEEQDVGDAGR EKEESRRKRRERKQRREGGDGEEQDVGDAG EGGDGEEQDVGDAGRLLLRVLHVSENPVPL R R E G R L 1 2 0 3 0 1 3 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 16 1 1645.6928 Q8N1G4 Q8N1G4 291 306 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 0.032379 27.85 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0934 1.1208 13.328 4 Median 1.1811 1.1637 NaN 1 0 Median 0.95976 0.87166 NaN 1 0 Median 1.0122 1.1295 NaN 1 0 Median 1.1935 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3410900 1694000 1717000 1019000 559380 459600 1486800 698150 788680 743470 370900 372570 161620 65514 96102 0 0 0 0 0 0 28224 3359 29694 148180;148181;148182;148183;148184 149203;149204 149203 1 REHALTSGTIK YVKLISSDGHEFIVKREHALTSGTIKAMLS FIVKREHALTSGTIKAMLSGPGQFAENETN K R E I K A 1 1 0 0 0 0 1 1 1 1 1 1 0 0 0 1 2 0 0 0 0 0 11 1 1211.6622 Q15369;E5RHG8;R4GMY8 Q15369 33 43 TCEB1 Transcription elongation factor B polypeptide 1 yes no 3 0.024737 22.046 By matching By MS/MS By matching 1 1 1 1.1944 1.1712 2.0187 3 Median 1.1944 1.1712 NaN 1 0 Median 1.3172 1.1629 NaN 1 0 Median 1.1489 1.2079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1421900 643010 778860 633140 288750 344390 455110 206260 248850 333620 148000 185620 0 0 0 0 0 0 0 0 0 28225 846 29695 148185;148186;148187 149205 149205 1 RELNEDKLEK DNATYCRLAQFIGNRRELNEDKLEKLEELT FIGNRRELNEDKLEKLEELTMDGAKAKAIL R R E E K L 0 1 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 2 1272.6674 O00567;A0A494C128;Q5JXT2 O00567 221 230 NOP56 Nucleolar protein 56 yes no 3 0.063342 15.539 By MS/MS 1 1.1788 1.3443 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1788 1.3443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 761520 382610 378910 0 0 0 0 0 0 761520 382610 378910 0 0 0 0 0 0 0 0 0 28226 1472 29696 148188 149206 149206 1 REMEAQQAALDPALK GNSDDAIRSILQQARREMEAQQAALDPALK REMEAQQAALDPALKQAPLSQSDITILTPK R R E L K Q 4 1 0 1 0 2 2 0 0 0 2 1 1 0 1 0 0 0 0 0 0 0 15 1 1669.8458 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 670 684 no no 3 0.023907 24.287 By MS/MS 1 0.86163 1.0332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86163 1.0332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6565800 3832400 2733400 0 0 0 0 0 0 6565800 3832400 2733400 0 0 0 0 0 0 0 0 0 28227 388 29697 148189 149207 149207 0 RENILVMR ESEEKLKQQQQESARRENILVMRLATKEQE QQQESARRENILVMRLATKEQEMQECTTQI R R E M R L 0 2 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 8 1 1029.5753 Q15007;A0A087X1R4 Q15007 72 79 WTAP Pre-mRNA-splicing regulator WTAP yes no 2 0.0090656 71.501 By MS/MS By MS/MS 1 1 1.1435 1.1413 15.177 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94686 1.0252 NaN 1 0 Median 1.381 1.2706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6416300 2863400 3552900 0 0 0 0 0 0 4490100 2003900 2486200 1926200 859510 1066700 0 0 0 0 0 0 28228 2910 29698 148190;148191 149208;149209;149210 149208 3 RENLSDEDKLNNAK IDAIAPNAVRQEMIRRENLSDEDKLNNAKY RRENLSDEDKLNNAKYAISVARKIGARIYA R R E A K Y 1 1 3 2 0 0 2 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 14 2 1644.8067 Q14651 Q14651 572 585 PLS1 Plastin-1 yes yes 3 0.034674 19.075 By MS/MS By matching 1 1 0.97732 0.99178 12.786 2 Median 1.0028 1.0856 NaN 1 0 Median 0.95246 0.90605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2442700 1215600 1227000 1170600 620020 550620 1272000 595580 676430 0 0 0 0 0 0 0 0 0 0 0 0 28229 2884 29699 148192;148193 149211;149212 149212 2 REPAEQPGDGER HAQSSKADSLLAVVKREPAEQPGDGERTDC VVKREPAEQPGDGERTDCEPVGLEPAVEQS K R E E R T 1 2 0 1 0 1 3 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 12 1 1339.6117 Q15424;Q14151 Q15424 295 306 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3 0.010609 26.124 By matching By matching By MS/MS 1 1 2 0.6369 0.69049 11.37 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5304 0.64508 NaN 1 0 Median 0.83597 0.81841 NaN 1 0 Median 0.6369 0.69049 8.8682 2 0 Median NaN NaN NaN 0 0 Median 818010 454630 363380 0 0 0 0 0 0 82110 50444 31666 172100 86858 85239 563800 317330 246480 0 0 0 28230 2951;2859 29700 148194;148195;148196;148197 149213 149213 1 REPFLLSGGDDGALK ATAHDGDVNVISWSRREPFLLSGGDDGALK REPFLLSGGDDGALKIWDLRQFKSGSPVAT R R E L K I 1 1 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 15 1 1573.81 Q9BQ67 Q9BQ67 319 333 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2;3 7.8095E-05 59.513 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.0033 0.97083 14.346 7 Median NaN NaN NaN 0 0 Median 0.99123 0.90585 NaN 1 0 Median 1.0255 1.0921 3.8096 2 1 Median 0.97196 0.92277 7.1794 2 0 Median 1.103 1.1363 NaN 1 1 Median 0.84117 0.76874 NaN 1 0 Median 30032000 14099000 15932000 0 0 0 1914100 962360 951760 16347000 7768200 8578900 4737600 2483900 2253700 5842900 2382500 3460500 1189900 502330 687620 28231 3784 29701 148198;148199;148200;148201;148202;148203;148204;148205 149214;149215;149216;149217;149218;149219;149220 149216 7 REPLPSR APVSRGRDSYGGPPRREPLPSRRDVYLSPR DSYGGPPRREPLPSRRDVYLSPRDDGYSTK R R E S R R 0 2 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 7 1 853.477 P38159;H3BT71;H0Y6E7;H3BUY5;Q8IZ40;Q96E39 P38159 196 202 RBMX;RCOR2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;REST corepressor 2;RNA binding motif protein, X-linked-like-1 no no 2 0.025973 63.306 By matching By matching By MS/MS By matching 2 1 2 3 0.89005 0.79541 11.026 8 Median NaN NaN NaN 0 0 Median 0.96375 0.88444 10.7 2 0 Median 0.73948 0.80065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62871 0.67864 2.2449 2 0 Median 0.89845 0.7902 2.3335 3 0 Median 7655900 4486800 3169200 0 0 0 657700 329350 328350 994960 589410 405550 0 0 0 4693300 2859900 1833300 1310000 708090 601940 28232 2273;3632 29702 148206;148207;148208;148209;148210;148211;148212;148213 149221;149222 149222 2 REPLSLINVR GARPGPGVWDPNWDRREPLSLINVRKRNVE PNWDRREPLSLINVRKRNVESGEEELASKL R R E V R K 0 2 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 10 1 1195.7037 Q96HS1 Q96HS1 65 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00088328 102.06 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 1 1.0174 0.96337 12.444 5 Median 0.79289 0.8536 NaN 1 1 Median 1.2827 1.1806 NaN 1 0 Median 0.94862 0.99012 NaN 1 0 Median 1.0323 0.96337 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0174 0.89482 NaN 1 0 Median 36134000 18289000 17845000 19016000 10452000 8564600 6641800 2756800 3885000 4789600 2310000 2479600 3764600 1805800 1958700 0 0 0 1921700 964500 957190 28233 3669 29703 148214;148215;148216;148217;148218 149223;149224 149223 2 REPTVSSFYVK WNNAFTLLSAVSLPRREPTVSSFYVKRAEL SLPRREPTVSSFYVKRAELWDTWKVAHLKE R R E V K R 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 2 1 0 1 2 0 0 11 1 1311.6823 Q9BVI4;F5H303 Q9BVI4 222 232 NOC4L Nucleolar complex protein 4 homolog yes no 2 0.0031785 54.608 By matching By matching By MS/MS 1 1 1 1.154 1.2874 32.23 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.154 1.2874 NaN 1 0 Median 1.4971 1.4049 NaN 1 0 Median 0.75872 0.77352 NaN 1 0 Median NaN NaN NaN 0 0 Median 25740000 13368000 12372000 0 0 0 0 0 0 3169200 1663000 1506200 1368800 562490 806290 21202000 11143000 10059000 0 0 0 28234 3854 29704 148219;148220;148221 149225 149225 1 REPWLLPSQHNDIIR YQPFFRAHAHLDTGRREPWLLPSQHNDIIR REPWLLPSQHNDIIRDALGQRYSLLPFWYT R R E I R D 0 2 1 1 0 1 1 0 1 2 2 0 0 0 2 1 0 1 0 0 0 0 15 1 1872.9959 E9PKU7;Q14697;F5H6X6 Q14697 684 698 GANAB Neutral alpha-glucosidase AB no no 2;3;4 5.1686E-10 146.36 By MS/MS By MS/MS 4 3 0.99915 0.98853 17.021 7 Median 0.76958 0.83896 17.61 4 0 Median 1.1174 1.0773 8.7974 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 148300000 77992000 70307000 105110000 57268000 47840000 43191000 20724000 22466000 0 0 0 0 0 0 0 0 0 0 0 0 28235 2896;951 29705 148222;148223;148224;148225;148226;148227;148228 149226;149227;149228;149229;149230;149231;149232 149228 7 REQEVNILK DTLDSTAAQQELRSKREQEVNILKKTLEEE QELRSKREQEVNILKKTLEEEAKTHEAQIQ K R E L K K 0 1 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1127.6299 P35579 P35579 1165 1173 MYH9 Myosin-9 yes yes 2 0.003568 71.501 By MS/MS 1 0.90656 0.8597 NaN 1 Median NaN NaN NaN 0 0 Median 0.90656 0.8597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3594800 1839300 1755500 0 0 0 3594800 1839300 1755500 0 0 0 0 0 0 0 0 0 0 0 0 28236 2244 29706 148229 149233 149233 1 REWGPIFNILK IRLTADLSAETLQARREWGPIFNILKEKNF LQARREWGPIFNILKEKNFQPRISYPAKLS R R E L K E 0 1 1 0 0 0 1 1 0 2 1 1 0 1 1 0 0 1 0 0 0 0 11 1 1371.7663 Q9UN81 Q9UN81 262 272 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 0.0095027 43.77 By MS/MS By matching 1 1 1.7144 1.5837 39.461 2 Median NaN NaN NaN 0 0 Median 1.2802 1.1981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2959 2.0934 NaN 1 0 Median 2837500 1131500 1706100 0 0 0 2146500 924600 1221900 0 0 0 0 0 0 0 0 0 691060 206870 484190 28237 4340 29707 148230;148231 149234 149234 1 RFAIGSQVSEHSIIK EDQEMLSRIEKQLKRRFAIGSQVSEHSIIK RFAIGSQVSEHSIIKDFTKQKYPEHAIHKV R R F I K D 1 1 0 0 0 1 1 1 1 3 0 1 0 1 0 3 0 0 0 1 0 0 15 1 1670.9104 P33992;B1AHB1 P33992 682 696 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.064276 7.9138 By matching By MS/MS 1 1 1.2575 1.27 26.073 2 Median 1.0312 1.0561 NaN 1 0 Median 1.5333 1.5271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7465000 2946100 4519000 2618600 1031500 1587000 4846500 1914600 2931900 0 0 0 0 0 0 0 0 0 0 0 0 28238 2224 29708 148232;148233 149235 149235 1 RFALTFGLDQLK DRSSSTFSGIKELARRFALTFGLDQLKTRE LARRFALTFGLDQLKTREAIAMLHKDGIEF R R F L K T 1 1 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 1 1407.7874 Q8N3U4 Q8N3U4 954 965 STAG2 Cohesin subunit SA-2 yes yes 2;3 0.0063871 44.309 By MS/MS 2 0.78668 0.89552 20.883 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78668 0.89552 20.883 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4777500 2673400 2104100 0 0 0 0 0 0 4777500 2673400 2104100 0 0 0 0 0 0 0 0 0 28239 3369 29709 148234;148235 149236;149237 149236 2 RFDAMPFTLR LKMKTSRAFFSEVERRFDAMPFTLRAFEDE SEVERRFDAMPFTLRAFEDEKKARMGVVEC R R F L R A 1 2 0 1 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 10 1 1252.6387 Q9UQ80 Q9UQ80 272 281 PA2G4 Proliferation-associated protein 2G4 yes yes 2;3 0.00017323 112.75 By MS/MS By matching By MS/MS By MS/MS By matching 5 4 3 6 1 1.0453 1.0041 35.269 19 Median 1.0453 1.0556 18.538 5 0 Median 0.73823 0.6595 53.921 4 0 Median 1.0275 1.1125 8.9463 3 0 Median 1.062 0.95975 13.577 6 0 Median 1.3522 1.4247 NaN 1 0 Median NaN NaN NaN 0 0 Median 122390000 59221000 63167000 49773000 24572000 25202000 8552400 4535000 4017400 22701000 11237000 11464000 40855000 18649000 22206000 507640 229390 278250 0 0 0 28240 4360 29710;29711 148236;148237;148238;148239;148240;148241;148242;148243;148244;148245;148246;148247;148248;148249;148250;148251;148252;148253;148254 149238;149239;149240;149241;149242;149243;149244;149245;149246;149247;149248;149249 149249 1933 12 RFDAQTGADR PAIIFIDEIDAIATKRFDAQTGADREVQRI AIATKRFDAQTGADREVQRILLELLNQMDG K R F D R E 2 2 0 2 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 10 1 1135.537 P43686 P43686 274 283 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.064399 29.473 By matching By MS/MS 2 1 1.1345 1.0231 16.647 3 Plateau 0.87318 0.86044 18.826 2 0 Median 1.1345 1.0231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1328300 643900 684350 294290 149950 144340 1034000 493950 540010 0 0 0 0 0 0 0 0 0 0 0 0 28241 2327 29712 148255;148256;148257 149250 149250 1 RFDDAVVQSDMK NPTNTVFDAKRLIGRRFDDAVVQSDMKHWP IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R R F M K H 1 1 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 12 1 1409.6609 P11142;E9PKE3;E9PNE6;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 77 88 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 3.7998E-09 169.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 5 6 5 5 1.1064 1.1034 11.899 33 Median 1.1446 1.1564 5.3775 7 0 Median 1.1045 0.99389 13.122 6 1 Median 1.0393 1.1034 16.015 5 0 Median 1.1916 1.0925 10.331 5 0 Median 1.0461 1.1072 14.935 5 0 Median 1.2241 1.0588 9.2834 5 1 Median 1138900000 530950000 607960000 336660000 155230000 181430000 488920000 226890000 262030000 156600000 76674000 79921000 72177000 32957000 39220000 69034000 31913000 37121000 15525000 7282100 8242700 28242 1950 29713;29714 148258;148259;148260;148261;148262;148263;148264;148265;148266;148267;148268;148269;148270;148271;148272;148273;148274;148275;148276;148277;148278;148279;148280;148281;148282;148283;148284;148285;148286;148287;148288;148289;148290;148291;148292 149251;149252;149253;149254;149255;149256;149257;149258;149259;149260;149261;149262;149263;149264;149265;149266;149267;149268;149269;149270;149271;149272;149273;149274;149275;149276;149277;149278;149279;149280;149281;149282;149283;149284;149285;149286;149287;149288;149289;149290;149291;149292;149293;149294;149295;149296;149297;149298;149299;149300;149301;149302;149303 149271 726 53 RFDEATQLR CVQMTKEVQKAMDDKRFDEATQLRGGSFEN KAMDDKRFDEATQLRGGSFENNWNIYKLLA K R F L R G 1 2 0 1 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 9 1 1134.5782 P17858 P17858 366 374 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.0033325 72.643 By matching By MS/MS 1 1 1.1977 1.2063 24.256 2 Median 0.9911 1.0162 NaN 1 0 Median 1.4474 1.432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5270200 2424400 2845800 1457300 821960 635360 3812900 1602400 2210400 0 0 0 0 0 0 0 0 0 0 0 0 28243 2047 29715 148293;148294 149304;149305 149304 2 RFDEDDDKSFR LEREFNNLLVMGTDRRFDEDDDKSFRRAPS GTDRRFDEDDDKSFRRAPSWRKKFRPKDIR R R F F R R 0 2 0 4 0 0 1 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 11 2 1428.627 A0A2R8Y7R9;Q13136 A0A2R8Y7R9 1147 1157 PPFIA1 Liprin-alpha-1 yes no 3 0.00014739 69.451 By matching By MS/MS By MS/MS 1 1 1 1.0389 1.1712 17.713 3 Median 0.86665 0.88425 NaN 1 0 Median 1.131 1.2267 NaN 1 0 Median 1.0389 1.1712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3331600 1468300 1863300 843930 319780 524150 1150900 589410 561490 1336800 559150 777650 0 0 0 0 0 0 0 0 0 28244 382 29716 148295;148296;148297 149306;149307 149306 1 RFDEILEASDGIMVAR NIKIISKIENHEGVRRFDEILEASDGIMVA FDEILEASDGIMVARGDLGIEIPAEKVFLA R R F A R G 2 2 0 2 0 0 2 1 0 2 1 0 1 1 0 1 0 0 0 1 0 0 16 1 1820.9091 H3BTN5;P14618;B4DNK4 P14618 279 294 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3 5.1319E-11 167.44 By MS/MS By MS/MS By MS/MS By matching 12 10 3 2 1.1474 1.0756 43.74 26 Median 1.1633 1.1973 38.652 12 2 Median 1.1289 1.0253 59.86 9 0 Median 1.1727 1.2665 9.9481 3 1 Median 0.99031 0.91115 0.90944 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 419790000 194500000 225290000 245900000 114950000 130960000 145460000 65977000 79487000 28056000 13423000 14633000 365110 152170 212940 0 0 0 0 0 0 28245 2005;1237 29717;29718 148298;148299;148300;148301;148302;148303;148304;148305;148306;148307;148308;148309;148310;148311;148312;148313;148314;148315;148316;148317;148318;148319;148320;148321;148322;148323;148324 149308;149309;149310;149311;149312;149313;149314;149315;149316;149317;149318;149319;149320;149321;149322;149323;149324;149325;149326;149327;149328;149329;149330;149331;149332;149333;149334 149312 416 26 RFDFDYTTMHR LRFLHFPYLLTLQLKRFDFDYTTMHRIKLN LQLKRFDFDYTTMHRIKLNDRMTFPEELDM K R F H R I 0 2 0 2 0 0 0 0 1 0 0 0 1 2 0 0 2 0 1 0 0 0 11 1 1487.6616 Q96K76 Q96K76 392 402 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 3 4.6033E-05 75.819 By MS/MS By matching 1 2 1.197 1.28 30.844 3 Plateau 1.197 1.28 NaN 1 0 Median 0.98291 0.96983 37.272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7515600 2991300 4524300 6459800 2434500 4025200 1055900 556800 499070 0 0 0 0 0 0 0 0 0 0 0 0 28246 3690 29719 148325;148326;148327 149335 149335 1 RFDGVQDPR LPRLKRRDFTPAELRRFDGVQDPRILMAIN TPAELRRFDGVQDPRILMAINGKVFDVTKG R R F P R I 0 2 0 2 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 9 1 1088.5363 O00264 O00264 80 88 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 2 0.056291 33.797 By MS/MS By matching 1 1 0.87277 0.91882 20.812 2 Median 0.99584 1.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7649 0.79308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4753200 2313500 2439700 3258700 1532100 1726700 0 0 0 1494500 781400 713090 0 0 0 0 0 0 0 0 0 28247 1451 29720 148328;148329 149336 149336 1 RFDLQQLQR ______________________________ MFQYWKRFDLQQLQRELDATATVLANRQDE K R F Q R E 0 2 0 1 0 3 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 9 1 1202.652 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 14 22 CUX1 Protein CASP no no 2 0.00074261 117.89 By MS/MS By MS/MS 1 1 1.1625 1.2434 16.703 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1077 1.3993 NaN 1 0 Median 1.2201 1.1049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12375000 5888200 6487100 0 0 0 0 0 0 10264000 4911600 5352100 2111400 976520 1134900 0 0 0 0 0 0 28248 388;2847 29721 148330;148331 149337;149338 149337 2 RFDSELSQAHEEAQR EGQQVRNHELEKKQRRFDSELSQAHEEAQR RFDSELSQAHEEAQREKLQREKLQREKDML R R F Q R E 2 2 0 1 0 2 3 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 15 1 1801.8343 Q92614;A0A0D9SFK2 Q92614 1462 1476 MYO18A Unconventional myosin-XVIIIa yes no 3 5.3277E-10 102.38 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2369 1.1828 28.886 4 Median 1.6177 1.73 NaN 1 0 Median 1.2656 1.2781 NaN 1 0 Median 0.68791 0.869 NaN 1 0 Median 1.2088 1.0947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18704000 8945300 9758500 3689400 1462600 2226800 4483700 1897700 2586000 7194900 4004900 3190000 3335800 1580000 1755700 0 0 0 0 0 0 28249 267 29722 148332;148333;148334;148335 149339;149340;149341;149342;149343;149344;149345 149343 7 RFDSELSQAHEEAQREK EGQQVRNHELEKKQRRFDSELSQAHEEAQR DSELSQAHEEAQREKLQREKLQREKDMLLA R R F E K L 2 2 0 1 0 2 4 0 1 0 1 1 0 1 0 2 0 0 0 0 0 0 17 2 2058.9719 Q92614;A0A0D9SFK2 Q92614 1462 1478 MYO18A Unconventional myosin-XVIIIa yes no 4 0.060481 15.942 By matching By MS/MS 1 1 0.83137 0.92057 14.056 2 Median 0.99653 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69358 0.83348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5663500 3015600 2647900 3133500 1645600 1487900 0 0 0 2530000 1370000 1160000 0 0 0 0 0 0 0 0 0 28250 267 29723 148336;148337 149346 149346 0 RFDVSGYPTLK PLAKVDATAETDLAKRFDVSGYPTLKIFRK DLAKRFDVSGYPTLKIFRKGRPYDYNGPRE K R F L K I 0 1 0 1 0 0 0 1 0 0 1 1 0 1 1 1 1 0 1 1 0 0 11 1 1281.6717 P13667;A0A499FI48 P13667 246 256 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00017961 119.68 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.1822 1.1751 75.958 5 Median 0.86908 0.8936 NaN 1 0 Median 1.3243 1.2635 10.255 2 0 Median 1.8673 1.9846 NaN 1 0 Median 0.32644 0.26941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36494000 17638000 18857000 21687000 11234000 10453000 11086000 4721800 6364600 1927300 634530 1292800 1793400 1047400 746060 0 0 0 0 0 0 28251 1993 29724 148338;148339;148340;148341;148342;148343 149347;149348;149349;149350 149348 4 RFEDLGSR SYLESPRGPRFDGPRRFEDLGSRCEGPRPK PRFDGPRRFEDLGSRCEGPRPKGPRFEGNR R R F S R C 0 2 0 1 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 1 978.48829 P49750;H0YIQ2 P49750 767 774 YLPM1 YLP motif-containing protein 1 yes no 2 0.00052913 154.49 By MS/MS By MS/MS 2 2 1.1593 1.1696 11.939 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1592 1.241 7.7614 2 0 Median 1.2004 1.0693 12.061 2 0 Median 10807000 4833500 5973100 0 0 0 0 0 0 0 0 0 0 0 0 7471200 3439700 4031500 3335400 1393800 1941600 28252 2395 29725 148344;148345;148346;148347 149351;149352;149353 149352 3 RFEEALQTIFNR YGKHVKWPSPPKVLRRFEEALQTIFNRWRA VLRRFEEALQTIFNRWRASQLIKSIPASDL R R F N R W 1 2 1 0 0 1 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 12 1 1522.7892 K7EIG7;O94832;J3QRN6 K7EIG7 683 694 MYO1D Unconventional myosin-Id yes no 3 0.00024099 58.172 By matching By MS/MS By matching By MS/MS 1 1 1 2 0.87346 1.0265 14.225 5 Median 0.86061 0.95616 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90514 1.0459 NaN 1 0 Median 0.86739 0.84916 NaN 1 0 Median 1.0039 1.1344 14.132 2 0 Median NaN NaN NaN 0 0 Median 6855800 3177200 3678600 1184700 644410 540260 0 0 0 2478000 1214200 1263800 270480 112140 158340 2922600 1206400 1716200 0 0 0 28253 1359 29726 148348;148349;148350;148351;148352 149354;149355;149356;149357 149355 4 RFEELGVK GHIGIAVPDVYSACKRFEELGVKFVKKPDD DVYSACKRFEELGVKFVKKPDDGKMKGLAF K R F V K F 0 1 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 1 976.53418 Q04760 Q04760 141 148 GLO1 Lactoylglutathione lyase yes yes 2 1.6925E-05 161.02 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 1.0501 1.0949 48.379 8 Median 0.73852 0.74643 54.349 2 0 Median 1.1656 1.0769 61.847 4 1 Median 1.0412 1.0935 NaN 1 0 Median 1.361 1.2047 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 253480000 124040000 129440000 175320000 86773000 88550000 55776000 26273000 29502000 18296000 8937200 9358500 4087500 2055500 2032000 0 0 0 0 0 0 28254 2712 29727 148353;148354;148355;148356;148357;148358;148359;148360;148361 149358;149359;149360;149361;149362;149363;149364;149365;149366;149367;149368;149369 149359 12 RFEELTNLIR DEEDTKRVVRSAKDKRFEELTNLIRTIRNA SAKDKRFEELTNLIRTIRNAMKIRDVTKCL K R F I R T 0 2 1 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 10 1 1289.7092 Q99613;B5ME19;H3BPE4 Q99613 56 65 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.020075 39.148 By MS/MS By matching By matching 1 1 1 1.4042 1.3947 19.499 3 Median 1.4042 1.5601 NaN 1 0 Median 1.1072 1.0674 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4246 1.3947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7750000 3721000 4029000 6071500 2952300 3119200 1298600 602970 695600 0 0 0 379910 165690 214220 0 0 0 0 0 0 28255 3757 29728 148362;148363;148364 149370 149370 1 RFEFLLK MDPEYEEKMKADRAKRFEFLLKQTELFAHF KMKADRAKRFEFLLKQTELFAHFIQPSAQK K R F L K Q 0 1 0 0 0 0 1 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 1 951.55419 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 94 100 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.024141 67.035 By MS/MS By matching 1 2 1.0799 1.1169 16.676 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2337 1.398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99187 1.0617 7.1664 2 0 Median NaN NaN NaN 0 0 Median 6708900 3094700 3614200 0 0 0 0 0 0 3997700 1726400 2271300 0 0 0 2711200 1368300 1342900 0 0 0 28256 167;643 29729 148365;148366;148367 149371 149371 1 RFEFQADAFAK PYNEVLSFCLTVLSRRFEFQADAFAKKLGK VLSRRFEFQADAFAKKLGKAKDLYSALIKL R R F A K K 3 1 0 1 0 1 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 11 1 1328.6513 O75844 O75844 413 423 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2 0.00041285 105.98 By MS/MS By MS/MS 2 2 1.3651 1.3488 8.7875 4 Median 1.3165 1.3488 0.10132 2 1 Median 1.5176 1.4264 14.154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31363000 14121000 17242000 17707000 8379900 9327400 13656000 5740700 7914800 0 0 0 0 0 0 0 0 0 0 0 0 28257 1700 29730 148368;148369;148370;148371 149372;149373;149374 149372 3 RFEIEYQGDPELQPIR ILTPLGRYQIINGLRRFEIEYQGDPELQPI FEIEYQGDPELQPIRSYEIASLVRTLFRLS R R F I R S 0 2 0 1 0 2 3 1 0 2 1 0 0 1 2 0 0 0 1 0 0 0 16 1 1988.9956 Q9NXE4;H7C1Q6 Q9NXE4 721 736 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 3 2.0479E-08 97.836 By MS/MS 2 0.75152 0.85338 47.854 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75152 0.85338 47.854 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9141400 4903900 4237500 0 0 0 0 0 0 9141400 4903900 4237500 0 0 0 0 0 0 0 0 0 28258 4162 29731 148372;148373 149375;149376;149377 149376 3 RFEKPLEEK KIIDRRPERRPPRERRFEKPLEEKGEGGEF RPPRERRFEKPLEEKGEGGEFSVDRPIIDR R R F E K G 0 1 0 0 0 0 3 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 9 2 1174.6346 Q8NC51 Q8NC51 137 145 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.0033715 91.867 By MS/MS By MS/MS 3 2 1.0064 1.051 2.6912 2 Median NaN NaN NaN 0 0 Median 1.0064 1.0312 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0065 1.0712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13231000 2409900 10821000 0 0 0 12517000 2308600 10208000 0 0 0 714450 101240 613210 0 0 0 0 0 0 28259 3414 29732 148374;148375;148376;148377;148378 149378;149379;149380;149381 149378 4 RFELYFQGPSSNKPR MVRSPQNQYPAELMRRFELYFQGPSSNKPR RFELYFQGPSSNKPRVIREVRADSVGKLVT R R F P R V 0 2 1 0 0 1 1 1 0 0 1 1 0 2 2 2 0 0 1 0 0 0 15 2 1824.9271 P33993;C9J8M6 P33993 133 147 MCM7 DNA replication licensing factor MCM7 yes no 3;4 2.7956E-07 96.247 By MS/MS By MS/MS By MS/MS 2 2 3 0.74143 0.74788 21.029 7 Median 0.63225 0.63775 22.529 2 0 Median 0.72041 0.87704 26.225 2 0 Median 0.78807 0.8841 11.054 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128150000 73307000 54843000 44439000 27653000 16787000 30036000 16251000 13785000 53675000 29404000 24271000 0 0 0 0 0 0 0 0 0 28260 2225 29733 148379;148380;148381;148382;148383;148384;148385 149382;149383;149384;149385;149386;149387;149388;149389 149385 8 RFEQAQHMFR NDCIVRINDGDLRNRRFEQAQHMFRQAMRT DLRNRRFEQAQHMFRQAMRTPIIWFHVVPA R R F F R Q 1 2 0 0 0 2 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 10 1 1348.6459 F5GZI3;Q5VWU8;Q5VWV2;Q8TEW0 F5GZI3 66 75 PARD3 Partitioning defective 3 homolog yes no 3 0.0032283 39.917 By matching By MS/MS By matching 1 1 1 0.97274 0.9266 22.608 3 Median NaN NaN NaN 0 0 Median 0.90496 0.84834 NaN 1 0 Median 1.0703 1.3017 NaN 1 0 Median 0.97274 0.9266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3400400 1827700 1572600 0 0 0 1388700 796880 591800 1486000 776180 709810 525680 254680 271000 0 0 0 0 0 0 28261 1015 29734 148386;148387;148388 149390 149390 1 RFEQEMMSK QLNSKLQQQREQIFRRFEQEMMSKKRQYDQ REQIFRRFEQEMMSKKRQYDQEIENLEKQQ R R F S K K 0 1 0 0 0 1 2 0 0 0 0 1 2 1 0 1 0 0 0 0 0 0 9 1 1184.5318 Q9H2G2 Q9H2G2 862 870 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.0024533 78.334 By MS/MS By MS/MS 1 1 1.0293 1.0082 4.4644 2 Median 1.0247 1.0405 NaN 1 0 Median 1.034 0.97688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8469200 3984500 4484700 3100900 1452100 1648800 5368300 2532400 2835900 0 0 0 0 0 0 0 0 0 0 0 0 28262 3942 29735 148389;148390 149391;149392;149393 149393 3 RFFMGNQVLK CFSVLGFCKSSQVQRRFFMGNQVLKVFAAR SQVQRRFFMGNQVLKVFAARDDEAAAVALS R R F L K V 0 1 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 10 1 1238.6594 P13010 P13010 354 363 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.0005738 97.798 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 4 5 1 1.144 1.1829 29.181 14 Median 1.1602 1.1945 11.311 3 0 Median 1.3232 1.3118 NaN 1 0 Median 1.0754 1.1429 7.7365 4 0 Median 1.3275 1.2309 41.972 5 0 Median NaN NaN NaN 0 0 Median 0.68125 0.62528 NaN 1 0 Median 147920000 68034000 79885000 50469000 22334000 28135000 12392000 5276500 7115200 58637000 29093000 29544000 25656000 10896000 14760000 0 0 0 765530 435090 330430 28263 1986 29736;29737 148391;148392;148393;148394;148395;148396;148397;148398;148399;148400;148401;148402;148403;148404 149394;149395;149396;149397;149398;149399;149400;149401;149402;149403;149404;149405;149406;149407;149408 149394 768 15 RFGGPVHHQAQR KNVALLSQLYHSPARRFGGPVHHQAQRFRF PARRFGGPVHHQAQRFRFSPMGVDHMSGLS R R F Q R F 1 2 0 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 12 1 1388.7174 Q15717 Q15717 206 217 ELAVL1 ELAV-like protein 1 yes yes 3 0.0016463 38.634 By MS/MS 1 0.88355 0.94307 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88355 0.94307 NaN 1 0 Median NaN NaN NaN 0 0 Median 702690 358240 344450 0 0 0 0 0 0 0 0 0 0 0 0 702690 358240 344450 0 0 0 28264 2964 29738 148405 149409;149410;149411;149412 149409 4 RFGIQAQMVTTDFQK MAMKGKNCVAIAADRRFGIQAQMVTTDFQK RFGIQAQMVTTDFQKIFPMGDRLYIGLAGL R R F Q K I 1 1 0 1 0 3 0 1 0 1 0 1 1 2 0 0 2 0 0 1 0 0 15 1 1768.893 P49720;A0A087WXQ8;A0A087WY10;A0A087WUL2 P49720 27 41 PSMB3 Proteasome subunit beta type-3 yes no 3 7.8055E-05 66.246 By MS/MS By matching By matching 1 2 1 1.262 1.1131 7.6892 4 Median 1.0325 1.0792 NaN 1 0 Median 1.2795 1.1664 11.677 2 0 Median NaN NaN NaN 0 0 Median 1.3063 1.1481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11480000 4947400 6532500 10378000 4489900 5888600 723910 315850 408060 0 0 0 377490 141680 235810 0 0 0 0 0 0 28265 2391 29739 148406;148407;148408;148409 149413 149413 1 RFGSEFSPELQASFQK NFRLLGNVLVVVLARRFGSEFSPELQASFQ FGSEFSPELQASFQKVVTGVANALAHRYH_ R R F Q K V 1 1 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 16 1 1856.9057 CON__Q3SX09 CON__Q3SX09 172 187 yes yes 2;3 1.3384E-10 113.99 By MS/MS By MS/MS 2 1 0.18447 0.19225 140.95 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.067195 0.069818 143.24 2 2 Median NaN NaN NaN 0 0 Median 0.33833 0.38132 NaN 1 1 Median NaN NaN NaN 0 0 Median 23490000 21799000 1691700 0 0 0 0 0 0 18731000 17947000 783650 0 0 0 4759800 3851700 908030 0 0 0 + 28266 777 29740 148410;148411;148412 149414;149415;149416 149415 3 RFGTVLTEHVAAAELGAR REDRTLYERIVSRLRRFGTVLTEHVAAAEL TVLTEHVAAAELGARGEALGPRDAGTRART R R F A R G 4 2 0 0 0 0 2 2 1 0 2 0 0 1 0 0 2 0 0 2 0 0 18 1 1897.017 H0Y8X4;O43598 H0Y8X4 47 64 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 3 0.0041359 25.198 By MS/MS 1 1.4278 1.3061 NaN 1 Median NaN NaN NaN 0 0 Median 1.4278 1.3061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1815900 692170 1123700 0 0 0 1815900 692170 1123700 0 0 0 0 0 0 0 0 0 0 0 0 28267 1164 29741 148413 149417;149418 149417 2 RFGVPVIADGGIQNVGHIAK RPQATAVYKVSEYARRFGVPVIADGGIQNV VIADGGIQNVGHIAKALALGASTVMMGSLL R R F A K A 2 1 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 20 1 2047.1327 P12268;H0Y4R1 P12268 356 375 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3 0.065906 14.614 By matching By matching By MS/MS 2 1 1 1.1225 1.1514 16.73 4 Median 1.1256 1.1625 19.86 2 0 Median 1.0686 0.97607 NaN 1 0 Median 1.179 1.3123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21368000 10201000 11168000 18393000 8975300 9417600 961620 477450 484170 2013900 747750 1266200 0 0 0 0 0 0 0 0 0 28268 1148 29742 148414;148415;148416;148417 149419 149419 0 RFIPLAELK PKWSMVDVQFVRMMKRFIPLAELKSYHQAH FVRMMKRFIPLAELKSYHQAHKATGGPLKN K R F L K S 1 1 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 9 1 1085.6597 Q9P016 Q9P016 171 179 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.022438 43.246 By MS/MS 1 0.65846 0.68008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65846 0.68008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3511000 1980000 1531100 0 0 0 0 0 0 3511000 1980000 1531100 0 0 0 0 0 0 0 0 0 28269 4198 29743 148418 149420 149420 1 RFLDELDAVQMD VLVSEAIKVLMGKCRRFLDELDAVQMD___ KCRRFLDELDAVQMD_______________ R R F M D - 1 1 0 3 0 1 1 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 12 1 1450.6762 O15160;E7EQB9;A0A2R8YEY5 O15160 335 346 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 0.0075725 41.283 By MS/MS 1 1.1057 1.198 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1057 1.198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4113200 1655000 2458200 0 0 0 0 0 0 4113200 1655000 2458200 0 0 0 0 0 0 0 0 0 28270 1528 29744 148419 149421 149421 1 RFMQTFVLAPEGSVANK VQVMGLLSNNNQALRRFMQTFVLAPEGSVA MQTFVLAPEGSVANKFYVHNDIFRYQDEVF R R F N K F 2 1 1 0 0 1 1 1 0 0 1 1 1 2 1 1 1 0 0 2 0 0 17 1 1893.9771 Q13283;E5RIZ6 Q13283 107 123 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 3 0.042709 20.939 By MS/MS By MS/MS 2 1 0.81332 0.81673 12.848 3 Median 0.80502 0.80838 1.4532 2 2 Median NaN NaN NaN 0 0 Median 0.90361 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16574000 8990600 7583900 12578000 6681900 5895900 0 0 0 3996600 2308700 1687900 0 0 0 0 0 0 0 0 0 28271 2803 29745 148420;148421;148422 149422;149423;149424 149423 3 RFNTANDDNVTQVR PSALEHSIQYSGEVRRFNTANDDNVTQVRA RRFNTANDDNVTQVRAFYVNVLNEEQRKRL R R F V R A 1 2 3 2 0 1 0 0 0 0 0 0 0 1 0 0 2 0 0 2 0 0 14 1 1648.7917 P04040 P04040 431 444 CAT Catalase yes yes 3 1.3758E-06 93.823 By MS/MS 1 1.1331 1.1163 NaN 1 Median 1.1331 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5040900 2685700 2355200 5040900 2685700 2355200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28272 1841 29746 148423 149425 149425 1 RFNVAVTR QLDLDFNLGFLKNPKRFNVAVTRAKALLII GFLKNPKRFNVAVTRAKALLIIVGNPLLLG K R F T R A 1 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 8 1 961.54575 Q9HCE1;Q5JR04 Q9HCE1 904 911 MOV10 Putative helicase MOV-10 yes no 2 0.026682 74.127 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28273 4029 29747 148424 149426 149426 1 RFPDLNR EDAELRQTLQEDLLRRFPDLNRLAKKFQRQ TLQEDLLRRFPDLNRLAKKFQRQAANLQDC R R F N R L 0 2 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 7 1 916.4879 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;A0A2R8Y7S8 P43246 383 389 MSH2 DNA mismatch repair protein Msh2 yes no 2 0.046931 48.504 By matching By matching By MS/MS 1 1 1 0.97095 0.95056 4.2256 3 Median NaN NaN NaN 0 0 Median 1.033 0.99593 NaN 1 0 Median 0.7922 0.91537 NaN 1 0 Median 0.97095 0.95056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5730800 2871900 2858900 0 0 0 2219100 1128600 1090500 2073300 1158400 914900 1438400 584910 853480 0 0 0 0 0 0 28274 2324 29748 148425;148426;148427 149427;149428 149428 2 RFPELESLVPNALDYIR ELNIIHKFIRDKYSKRFPELESLVPNALDY PELESLVPNALDYIRTVKELGNSLDKCKNN K R F I R T 1 2 1 1 0 0 2 0 0 1 3 0 0 1 2 1 0 0 1 1 0 0 17 1 2031.0789 Q8WWY3;E7EVX8;E7EU94;E7ESX0;E7EN72 Q8WWY3 121 137 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 3 0.00070063 34.498 By MS/MS By matching By MS/MS By matching 1 3 1 1 0.76681 0.73911 17.953 6 Median 0.49876 0.49139 NaN 1 0 Median 0.82382 0.76935 4.8102 3 0 Median 0.60042 0.64849 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74678 0.78397 NaN 1 0 Median NaN NaN NaN 0 0 Median 5005300 2699400 2305900 761490 364330 397160 2364500 1265500 1099000 1537300 852510 684750 0 0 0 342040 217020 125030 0 0 0 28275 3513 29749 148428;148429;148430;148431;148432;148433 149429;149430;149431;149432 149430 4 RFPGYDSESK KGAVDGGLSIPHSTKRFPGYDSESKEFNAE PHSTKRFPGYDSESKEFNAEVHRKHIMGQN K R F S K E 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 10 1 1184.5462 A0A2R8Y6J3;P46777 A0A2R8Y6J3 129 138 RPL5 60S ribosomal protein L5 yes no 2 3.7706E-10 172.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1 0.871 0.88539 22.246 9 Median 0.82899 0.8432 9.0098 2 0 Median 0.95158 0.84237 40.666 3 1 Median 0.871 0.95107 NaN 1 0 Median 0.9617 0.90757 NaN 1 0 Median 0.76697 0.83137 NaN 1 0 Median 0.98237 0.88539 NaN 1 0 Median 66507000 34677000 31830000 15363000 8041000 7322200 29090000 14528000 14562000 2694800 1396600 1298100 12740000 7275900 5464500 4664700 2449900 2214800 1954800 985880 968900 28276 375 29750 148434;148435;148436;148437;148438;148439;148440;148441;148442 149433;149434;149435;149436;149437;149438;149439;149440;149441;149442;149443;149444;149445;149446;149447;149448;149449;149450;149451;149452;149453;149454;149455;149456;149457;149458;149459;149460;149461;149462 149450 30 RFPGYDSESKEFNAEVHR KGAVDGGLSIPHSTKRFPGYDSESKEFNAE GYDSESKEFNAEVHRKHIMGQNVADYMRYL K R F H R K 1 2 1 1 0 0 3 1 1 0 0 1 0 2 1 2 0 0 1 1 0 0 18 2 2167.0083 A0A2R8Y6J3;P46777 A0A2R8Y6J3 129 146 RPL5 60S ribosomal protein L5 yes no 4;5 4.5126E-13 140.81 By MS/MS By matching By matching 4 1 1 0.87464 0.87662 9.3726 6 Median 0.87464 0.87516 6.5596 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0399 1.0638 NaN 1 0 Median 0.74834 0.85365 NaN 1 0 Median NaN NaN NaN 0 0 Median 45887000 23331000 22557000 42118000 21611000 20507000 0 0 0 0 0 0 1201600 424120 777480 2568100 1295900 1272200 0 0 0 28277 375 29751 148443;148444;148445;148446;148447;148448 149463;149464;149465;149466 149464 3 RFPPYHVGQTFDR NQLRRPQYRPQYRQRRFPPYHVGQTFDRRS QRRFPPYHVGQTFDRRSRVLPHPNRIQAGE R R F D R R 0 2 0 1 0 1 0 1 1 0 0 0 0 2 2 0 1 0 1 1 0 0 13 1 1618.8005 P16989 P16989 236 248 YBX3 Y-box-binding protein 3 yes yes 3 0.00087722 43.382 By MS/MS By matching By matching By MS/MS 3 2 1 2 0.76487 0.81357 43.573 8 Median 0.60386 0.60981 45.868 3 0 Median 0.88177 0.84764 78.494 2 0 Median 0.74229 0.91279 NaN 1 0 Median 1.0379 0.96499 40.411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29874000 17822000 12051000 21365000 13163000 8202200 2887700 1635600 1252100 2554600 1537700 1016900 3066300 1486000 1580300 0 0 0 0 0 0 28278 2033 29752 148449;148450;148451;148452;148453;148454;148455;148456 149467;149468;149469;149470 149468 4 RFPPYYMR APEGQAQQRRPYRRRRFPPYYMRRPYGRRP RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ R R F M R R 0 2 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 0 8 1 1128.5539 P67809;H0Y449;C9J5V9 P67809 192 199 YBX1 Nuclease-sensitive element-binding protein 1 yes no 2 3.1441E-06 121.29 By MS/MS By MS/MS By MS/MS 1 1 2 1.2869 1.274 21.59 4 Linear 1.1836 1.1953 NaN 1 0 Median 0.81614 0.736 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.064 0.99246 13.819 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24813000 12044000 12768000 5538100 2639700 2898400 3335700 1754000 1581700 0 0 0 15939000 7650700 8288300 0 0 0 0 0 0 28279 2627 29753 148457;148458;148459;148460 149471;149472;149473;149474;149475 149474 5 RFPVAPLIPYPLITK HPRKKKKEKKEDIFRRFPVAPLIPYPLITK RFPVAPLIPYPLITKEDINAIEMEEDKRDL R R F T K E 1 1 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 15 1 1724.0389 P49756;H0YE46 P49756 247 261 RBM25 RNA-binding protein 25 yes no 2;3 0.00048116 54.471 By matching By MS/MS By matching By matching By matching 1 5 1 1 1 0.53149 0.58137 21.533 8 Median NaN NaN NaN 0 0 Median 1.1104 1.0692 NaN 1 0 Median 0.50943 0.57704 4.4322 5 0 Median 0.63204 0.6074 NaN 1 0 Median 0.52341 0.58273 NaN 1 0 Median NaN NaN NaN 0 0 Median 26115000 17144000 8971600 0 0 0 489920 300640 189280 24777000 16315000 8462500 173490 100770 72729 570070 373020 197050 104370 54296 50075 28280 2397 29754 148461;148462;148463;148464;148465;148466;148467;148468;148469 149476;149477;149478;149479;149480;149481 149476 6 RFQDAAELAQHVR RARAGPPHTCPLCPRRFQDAAELAQHVRLH PRRFQDAAELAQHVRLH_____________ R R F V R L 3 2 0 1 0 2 1 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 13 1 1539.7906 Q9UK33 Q9UK33 158 170 ZNF580 Zinc finger protein 580 yes yes 3 0.0026431 35.657 By MS/MS 1 0.57279 0.59389 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57279 0.59389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5138000 3222600 1915400 0 0 0 0 0 0 5138000 3222600 1915400 0 0 0 0 0 0 0 0 0 28281 4305 29755 148470 149482 149482 1 RFQDAVR CVQMTQDVQKAMDERRFQDAVRLRGRSFAG VQKAMDERRFQDAVRLRGRSFAGNLNTYKR R R F V R L 1 2 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 1 890.47225 Q01813;B1APP6 Q01813 375 381 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.01842 77.282 By matching By MS/MS 1 2 1.123 1.1111 13.047 3 Median 1.2357 1.2669 NaN 1 0 Median 1.1088 1.0413 9.1709 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4900400 2185400 2715100 833590 339240 494350 4066800 1846100 2220700 0 0 0 0 0 0 0 0 0 0 0 0 28282 2692 29756 148471;148472;148473 149483 149483 1 RFQELQR LGLALDSWDLDFYTKRFQELQRNPSTVEAF WDLDFYTKRFQELQRNPSTVEAFDLAQSNS K R F Q R N 0 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 1 975.52501 O15067 O15067 206 212 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.003379 115.69 By matching By MS/MS By matching By matching 4 2 1 2 1.1705 1.1394 16.019 9 Median 1.1644 1.2565 14.327 4 0 Median 1.1104 1.0428 3.9706 2 0 Median 1.2251 1.2702 NaN 1 0 Median 1.1418 0.97959 4.8892 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23038000 10378000 12660000 2371000 1056000 1315000 14590000 6800200 7789600 5295500 2157500 3138000 782090 364510 417580 0 0 0 0 0 0 28283 1518 29757 148474;148475;148476;148477;148478;148479;148480;148481;148482 149484;149485 149485 2 RFQFLQK GYRSRSAFKLIQLNRRFQFLQKARALLDLC FKLIQLNRRFQFLQKARALLDLCAAPGGWL R R F Q K A 0 1 0 0 0 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 1 965.54469 Q8IY81;J3KS74;J3QSE2;J3KS36 Q8IY81 38 44 FTSJ3 pre-rRNA processing protein FTSJ3 yes no 2 0.053116 46.37 By matching By MS/MS 2 1 1.1587 1.0032 114.6 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51846 0.58745 156.07 2 0 Median 1.1587 1.0032 NaN 1 0 Median 19219000 11265000 7954200 0 0 0 0 0 0 0 0 0 0 0 0 15501000 9624500 5876400 3718200 1640400 2077800 28284 3338 29758 148483;148484;148485 149486 149486 1 RFQGVSLPVHLR SAVHNLQPTQPSLIRRFQGVSLPVHLR___ LIRRFQGVSLPVHLR_______________ R R F L R - 0 2 0 0 0 1 0 1 1 0 2 0 0 1 1 1 0 0 0 2 0 0 12 1 1407.8099 C9JG87;Q9NYK5 C9JG87 286 297 MRPL39 39S ribosomal protein L39, mitochondrial yes no 3 0.00037604 51.286 By MS/MS By matching By matching By matching 2 1 2 1 1.0949 1.086 29.634 6 Median 0.92834 0.98803 6.5892 2 0 Median NaN NaN NaN 0 0 Median 1.105 1.1534 NaN 1 0 Median 1.6089 1.4291 54.471 2 0 Median 1.192 1.1394 NaN 1 0 Median NaN NaN NaN 0 0 Median 18482000 8732300 9749600 7701300 4066300 3635100 0 0 0 2370000 1097500 1272600 5769200 2496300 3272900 2641300 1072200 1569100 0 0 0 28285 697 29759 148486;148487;148488;148489;148490;148491 149487 149487 1 RFQILGK HPDRVGEGDKEDATRRFQILGKVYSVLSDR GDKEDATRRFQILGKVYSVLSDREQRAVYD R R F G K V 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 1 860.52322 Q8WXX5 Q8WXX5 58 64 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.0037278 117.56 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0662 1.0366 18.39 4 Median 1.0389 1.0406 NaN 1 0 Median 0.9197 0.83316 NaN 1 0 Median 1.2038 1.307 NaN 1 0 Median 1.0942 1.0326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38114000 17721000 20394000 8391000 4321000 4069900 2312900 1115500 1197500 9566700 4548200 5018600 17844000 7736100 10108000 0 0 0 0 0 0 28286 3522 29760 148492;148493;148494;148495 149488;149489;149490;149491;149492 149489 5 RFSAYNYR AQVLSLYRAMLRESKRFSAYNYRTYAVRRI AMLRESKRFSAYNYRTYAVRRIRDAFRENK K R F Y R T 1 2 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 8 1 1075.5199 Q9HD34;C9JY28;C9JRX8;F5H189;C9J799 Q9HD34 22 29 LYRM4 LYR motif-containing protein 4 yes no 2 0.03924 41.029 By MS/MS By matching 1 2 1.3958 1.19 77.189 3 Plateau 1.1734 1.1708 NaN 1 0 Median 0.64917 0.60742 95.109 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8558700 3990200 4568500 2133200 1026300 1107000 6425500 2964000 3461500 0 0 0 0 0 0 0 0 0 0 0 0 28287 4036 29761 148496;148497;148498 149493 149493 1 RFSDIQIR KALFNRLVPSVNGVRRFSDIQIRRLKRLGI PSVNGVRRFSDIQIRRLKRLGIEKTDPTTL R R F I R R 0 2 0 1 0 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 8 1 1033.5669 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 488 495 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0042684 133.23 By MS/MS By MS/MS By matching 1 2 1 1.2597 1.2303 21.024 4 Median 1.3418 1.4907 NaN 1 0 Median 1.2597 1.2303 0.61533 2 0 Median 0.7767 0.89746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49397000 21209000 28189000 16153000 7086600 9066500 29743000 12353000 17389000 3501900 1769100 1732800 0 0 0 0 0 0 0 0 0 28288 1968 29762 148499;148500;148501;148502 149494;149495;149496;149497 149495 4 RFSFSGNTLVSSSADPEGHFETPIWIER GHTFNYQTRQEFLLRRFSFSGNTLVSSSAD ADPEGHFETPIWIERVVIIGAGKPAAVVLQ R R F E R V 1 2 1 1 0 0 3 2 1 2 1 0 0 3 2 5 2 1 0 1 0 0 28 1 3165.5156 E9PKU7;Q14697;F5H6X6 Q14697 864 891 GANAB Neutral alpha-glucosidase AB no no 3 9.4512E-06 36.092 By MS/MS 1 0.57661 0.64062 NaN 1 Median 0.57661 0.64062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2802700 1759400 1043300 2802700 1759400 1043300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28289 2896;951 29763 148503 149498 149498 1 RFSMVVQDGIVK LDDSLVSIFGNRRLKRFSMVVQDGIVKALN RLKRFSMVVQDGIVKALNVEPDGTGLTCSL K R F V K A 0 1 0 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 0 3 0 0 12 1 1377.7439 P30044 P30044 180 191 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 6.8316E-06 102.06 By MS/MS By MS/MS 1 2 1.8407 1.6239 42.679 3 Median 0.93562 0.92343 NaN 1 0 Median 2.1083 1.8607 19.251 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17773000 7406600 10367000 11199000 5422600 5776700 6573900 1984000 4589900 0 0 0 0 0 0 0 0 0 0 0 0 28290 2181 29764 148504;148505;148506 149499;149500;149501;149502;149503 149500 5 RFSPIPFPPLSYK AVAVYTTTVHWLESRRFSPIPFPPLSYKHD SRRFSPIPFPPLSYKHDTKLLILALERLKE R R F Y K H 0 1 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 13 1 1547.85 Q6P2Q9;I3L0J9 Q6P2Q9 821 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.0016605 58.223 By matching By MS/MS 1 1 1.1516 1.2741 11.233 2 Median 1.1525 1.1768 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1507 1.3794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11895000 6466300 5428500 2174100 1287000 887100 0 0 0 9720800 5179400 4541400 0 0 0 0 0 0 0 0 0 28291 3157 29765 148507;148508 149504;149505 149505 2 RFSVSPSSPSSQQTPPPVTPR QRPKSQVMNVIGSERRFSVSPSSPSSQQTP SSPSSQQTPPPVTPRAKLSFSMQSSLELNG R R F P R A 0 2 0 0 0 2 0 0 0 0 0 0 0 1 6 6 2 0 0 2 0 0 21 1 2238.1393 A0A096LNH6;Q14185 A0A096LNH6 1775 1795 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 1.1358E-07 59.469 By MS/MS 1 0.37287 0.47102 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37287 0.47102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7149500 5366400 1783100 0 0 0 0 0 0 7149500 5366400 1783100 0 0 0 0 0 0 0 0 0 28292 140 29766 148509 149506 149506 1 RFTAFKEEYEGK SNIGDLASILKVEKRRFTAFKEEYEGKETA EKRRFTAFKEEYEGKETALLVDRYKFMDLY R R F G K E 1 1 0 0 0 0 3 1 0 0 0 2 0 2 0 0 1 0 1 0 0 0 12 2 1503.7358 Q12996;E9PLP8 Q12996 508 519 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.0016273 42.209 By matching By matching By MS/MS 1 1 1 0.91029 0.97297 34.328 3 Median 0.5899 0.58119 NaN 1 0 Median 1.2352 1.1139 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91029 0.97297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7658200 3106800 4551500 3218400 1342100 1876400 1923300 745340 1177900 0 0 0 2516600 1019400 1497200 0 0 0 0 0 0 28293 2777 29767 148510;148511;148512 149507 149507 1 RFTLWWSPTINR LTNAQRSGLNQIPNRRFTLWWSPTINRANV PNRRFTLWWSPTINRANVYVGFQVQLDLTG R R F N R A 0 2 1 0 0 0 0 0 0 1 1 0 0 1 1 1 2 2 0 0 0 0 12 1 1575.831 Q6P2Q9;I3L3Z8 Q6P2Q9 1533 1544 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.075285 7.5443 By MS/MS 1 0.96433 1.2182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96433 1.2182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 667420 329670 337750 0 0 0 0 0 0 667420 329670 337750 0 0 0 0 0 0 0 0 0 28294 3157 29768 148513 149508 149508 1 RFTMELAK NPKNYTDNELEKITRRFTMELAKKGFIGPG ELEKITRRFTMELAKKGFIGPGIDVPAPDM R R F A K K 1 1 0 0 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 8 1 994.52699 P00367;P49448 P00367 204 211 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.012153 62.546 By MS/MS By MS/MS By matching 1 2 1 1.2 1.1437 28.321 4 Median 0.99608 0.99203 NaN 1 0 Median 1.6463 1.5189 20.014 2 0 Median 0.85643 0.95151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33603000 14772000 18830000 16713000 7783700 8929000 15418000 6247700 9170600 1471900 741040 730810 0 0 0 0 0 0 0 0 0 28295 1814 29769 148514;148515;148516;148517 149509;149510 149509 2 RFVEVGR ______________________________ ______________________________ R R F G R V 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 1 861.48209 E7EPB3;P50914 E7EPB3 5 11 RPL14 60S ribosomal protein L14 yes no 2 0.0001617 152.47 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1 3 1.3137 1.2753 14.715 8 Median 1.1618 1.2419 NaN 1 0 Median 1.0435 0.88617 NaN 1 0 Median 1.2632 1.3097 NaN 1 0 Median 1.4808 1.3259 NaN 1 0 Median 1.3067 1.4171 NaN 1 0 Median 1.3287 1.1765 8.5125 3 0 Median 29106000 13048000 16059000 9644200 4496300 5147900 4682100 2284700 2397500 4635800 2006000 2629800 862040 378940 483090 5906300 2506900 3399500 3375900 1374800 2001000 28296 868 29770 148518;148519;148520;148521;148522;148523;148524;148525 149511;149512;149513;149514;149515;149516;149517;149518 149512 8 RFVNVVPTFGK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP QYNRRFVNVVPTFGKKKGPNANS_______ R R F G K K 0 1 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 11 1 1262.7135 E9PR30;P62861 E9PR30 80 90 FAU 40S ribosomal protein S30 yes no 2;3 0.00029089 102.07 By MS/MS By MS/MS By MS/MS 3 1 2 1.0422 0.9861 74.022 6 Median 0.98806 0.97377 1.6176 3 0 Median 1.0667 0.94179 NaN 1 0 Median 2.6888 2.7952 111.62 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80960000 30959000 50001000 50454000 25550000 24904000 5346700 2553200 2793400 25159000 2855200 22303000 0 0 0 0 0 0 0 0 0 28297 983 29771 148526;148527;148528;148529;148530;148531 149519;149520;149521;149522;149523;149524;149525;149526;149527;149528 149523 10 RFVNVVPTFGKK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP YNRRFVNVVPTFGKKKGPNANS________ R R F K K K 0 1 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 12 2 1390.8085 E9PR30;P62861 E9PR30 80 91 FAU 40S ribosomal protein S30 yes no 3 0.0017205 41.48 By MS/MS By matching 1 1 1.0144 1.0052 7.106 2 Median 0.97566 1.057 NaN 1 0 Median 1.0547 0.95597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12104000 6435600 5668600 7656600 4313000 3343600 4447600 2122600 2325000 0 0 0 0 0 0 0 0 0 0 0 0 28298 983 29772 148532;148533 149529;149530 149529 2 RFWQGSTDHR PYQDKLVGYITNYSRRFWQGSTDHRGVPGK TNYSRRFWQGSTDHRGVPGKPGRVVTLVED R R F H R G 0 2 0 1 0 1 0 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 10 1 1288.6061 Q8WUX2 Q8WUX2 31 40 CHAC2 Putative glutathione-specific gamma-glutamylcyclotransferase 2 yes yes 3 0.048983 25.437 By MS/MS 1 1.3231 1.2104 NaN 1 Median NaN NaN NaN 0 0 Median 1.3231 1.2104 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 619400 283010 336390 0 0 0 619400 283010 336390 0 0 0 0 0 0 0 0 0 0 0 0 28299 3498 29773 148534 149531 149531 1 RFWSLEDGLNR RFDGLLGFPGGFVDRRFWSLEDGLNRVLGL FVDRRFWSLEDGLNRVLGLGLGCLRLTEAD R R F N R V 0 2 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 11 1 1391.6946 Q9BRJ7;K7EIN2;K7ENA3;W4VSQ8 Q9BRJ7 70 80 NUDT16L1 Protein syndesmos yes no 2 0.057585 27.742 By MS/MS 2 0.63371 0.6858 18.252 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63371 0.6858 18.252 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7826600 3441000 4385600 0 0 0 0 0 0 7826600 3441000 4385600 0 0 0 0 0 0 0 0 0 28300 3796 29774 148535;148536 149532 149532 1 RFYEQMNGPVAGASR EKIWFDKFKYDDAERRFYEQMNGPVAGASR RFYEQMNGPVAGASRQENGASVILRDIARA R R F S R Q 2 2 1 0 0 1 1 2 0 0 0 0 1 1 1 1 0 0 1 1 0 0 15 1 1681.7995 E9PL71;E9PN91;E9PKK3;E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PQZ1;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7;E9PK06;E9PK72 P29692 24 38 EEF1D Elongation factor 1-delta no no 2;3 1.8841E-59 240.11 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 4 1.0487 0.98653 14.492 11 Median 0.96193 1.0356 16.986 4 0 Median 1.0107 0.93028 5.2269 2 0 Median 1.0943 1.1421 NaN 1 0 Median 1.0636 0.99252 16.859 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196200000 91731000 104470000 55235000 26781000 28454000 4310700 1745900 2564700 27079000 11586000 15493000 109580000 51618000 57959000 0 0 0 0 0 0 28301 985;2174;957 29775;29776 148537;148538;148539;148540;148541;148542;148543;148544;148545;148546;148547 149533;149534;149535;149536;149537;149538;149539;149540;149541;149542;149543;149544 149541 338 12 RFYPHTHNMDGFFIAK RFRERRFHPSLRSTRRFYPHTHNMDGFFIA FYPHTHNMDGFFIAKFKKFSNSIPQSQTGN R R F A K F 1 1 1 1 0 0 0 1 2 1 0 1 1 3 1 0 1 0 1 0 0 0 16 1 1979.9465 P46087 P46087 568 583 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 4 0.00024037 55.885 By MS/MS 2 0.86977 0.95651 12.771 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86977 0.95651 12.771 2 2 Median NaN NaN NaN 0 0 Median 12900000 6193300 6706300 0 0 0 0 0 0 0 0 0 0 0 0 12900000 6193300 6706300 0 0 0 28302 2338 29777 148548;148549 149545;149546 149545 2 RGADDDRPSWR DRGPRRGPEEDRFSRRGADDDRPSWRNTDD RFSRRGADDDRPSWRNTDDDRPPRRIADED R R G W R N 1 3 0 3 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 11 2 1329.6174 Q14152 Q14152 980 990 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.00062923 56.359 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.002 1.0611 11.208 6 Median 0.85667 0.95483 NaN 1 0 Median 1.0043 1.176 13.814 3 0 Plateau 0.99967 1.0797 NaN 1 0 Median 1.3468 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25402000 12478000 12924000 4377600 2314200 2063400 7600200 3449100 4151100 12975000 6449200 6525600 449850 265450 184390 0 0 0 0 0 0 28303 2860 29778 148550;148551;148552;148553;148554;148555 149547;149548;149549;149550 149548 4 RGAEDDRGPWR DRGPWRNADDDRIPRRGAEDDRGPWRNMDD RIPRRGAEDDRGPWRNMDDDRLSRRADDDR R R G W R N 1 3 0 2 0 0 1 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 11 2 1313.6225 Q14152 Q14152 1131 1141 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0001921 66.663 By MS/MS By MS/MS 1 2 0.91577 1.0207 23.057 3 Median 0.91577 1.0207 NaN 1 0 Median 0.81555 0.87572 30.112 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7232200 3707900 3524300 3446700 1701100 1745600 3785500 2006800 1778700 0 0 0 0 0 0 0 0 0 0 0 0 28304 2860 29779 148556;148557;148558 149551;149552;149553;149554;149555;149556;149557 149557 7 RGAGMPGQHGQITQQELDTVVK EQRRYVSSLTEEISKRGAGMPGQHGQITQQ QHGQITQQELDTVVKTQHEILRQVNEMKNS K R G V K T 1 1 0 1 0 4 1 4 1 1 1 1 1 0 1 0 2 0 0 2 0 0 22 1 2349.1859 P49257 P49257 373 394 LMAN1 Protein ERGIC-53 yes yes 4 1.9767E-06 41.257 By MS/MS By matching 1 1 0.9748 0.93052 2.1749 2 Median 0.94757 0.94494 NaN 1 0 Median 1.0028 0.91632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11491000 5251500 6239600 9326800 4271500 5055300 2164300 980050 1184300 0 0 0 0 0 0 0 0 0 0 0 0 28305 2375 29780 148559;148560 149558 149558 1084 1 RGALIVLEGVDR ______________________________ AARRGALIVLEGVDRAGKSTQSRKLVEALC R R G D R A 1 2 0 1 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 1 1296.7514 P23919;G5E9E9 P23919 5 16 DTYMK Thymidylate kinase yes no 2;3 0.00083314 73.781 By MS/MS By MS/MS 1 2 1.3465 1.1435 32.757 3 Median 1.6736 1.789 NaN 1 0 Median 1.2241 1.0396 13.479 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15818000 5394800 10423000 7809700 2025800 5783900 8008500 3368900 4639500 0 0 0 0 0 0 0 0 0 0 0 0 28306 2120 29781 148561;148562;148563 149559;149560;149561;149562 149559 4 RGALQGSAWQVSSEDVR QESPTAENARLLAQKRGALQGSAWQVSSED ALQGSAWQVSSEDVRWDTFPLGRMPGQTED K R G V R W 2 2 0 1 0 2 1 2 0 0 1 0 0 0 0 3 0 1 0 2 0 0 17 1 1844.9129 Q9Y4W2 Q9Y4W2 630 646 LAS1L Ribosomal biogenesis protein LAS1L yes yes 3 0.0013897 28.869 By MS/MS 1 1.01 1.167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.01 1.167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4738400 1957300 2781100 0 0 0 0 0 0 4738400 1957300 2781100 0 0 0 0 0 0 0 0 0 28307 4448 29782 148564 149563;149564 149564 2 RGAPAAATAPAPTAHK SFKLNRKKLEGGGERRGAPAAATAPAPTAH GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R R G H K A 7 1 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 16 1 1486.8005 Q92522 Q92522 128 143 H1FX Histone H1x yes yes 3 0.024896 15.514 By matching By matching By MS/MS By matching 1 1 1 2 0.67593 0.61965 28.457 5 Median 0.36526 0.3593 NaN 1 0 Median 0.67755 0.64196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45406 0.47951 NaN 1 0 Median 0.73377 0.67582 12.271 2 0 Median 3661000 2455900 1205100 601200 455530 145670 185990 92518 93476 0 0 0 0 0 0 2621600 1771100 850520 252220 136750 115470 28308 3531 29783 148565;148566;148567;148568;148569 149565 149565 1 RGAPPSSNIEDFHGLLPK RGPGPLQERSLFEKKRGAPPSSNIEDFHGL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS K R G P K G 1 1 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 18 1 1934.001 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4 P43243 270 287 MATR3 Matrin-3 yes no 3 0.045611 19.819 By MS/MS 1 4.2349 4.6585 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.2349 4.6585 NaN 1 1 Median NaN NaN NaN 0 0 Median 12507000 2741700 9765800 0 0 0 0 0 0 0 0 0 0 0 0 12507000 2741700 9765800 0 0 0 28309 297 29784 148570 149566 149566 1 RGAYGGGYGGYDDYNGYNDGYGFGSDR GYNSIGRGAGFERMRRGAYGGGYGGYDDYN DYNGYNDGYGFGSDRFGRDLNYCFSGMSDH R R G D R F 1 2 2 4 0 0 0 10 0 0 0 0 0 1 0 1 0 0 6 0 0 0 27 1 2872.1386 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 233 259 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 3 2.6273E-37 113.13 By MS/MS By matching By MS/MS 1 1 1 0.98484 1.0593 9.8085 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85652 0.92737 NaN 1 0 Median 1.2039 1.123 NaN 1 0 Median 0.98484 1.0593 NaN 1 0 Median NaN NaN NaN 0 0 Median 18908000 9152900 9755200 0 0 0 0 0 0 13322000 6458900 6862900 534130 227710 306420 5052200 2466300 2585900 0 0 0 28310 1136 29785 148571;148572;148573 149567;149568;149569 149568 3 RGAYLNALK LTRNNFLPNADMETRRGAYLNALKIAKLLL ADMETRRGAYLNALKIAKLLLTAIGYGHVR R R G L K I 2 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 9 1 1004.5767 Q93008;O00507 Q93008 1145 1153 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0049009 65.038 By matching By MS/MS 1 2 1.3237 1.2625 12.343 3 Median 0.99761 1.021 NaN 1 0 Median 1.3422 1.2643 0.20443 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12422000 5446400 6975500 1640700 869100 771640 10781000 4577300 6203800 0 0 0 0 0 0 0 0 0 0 0 0 28311 3573 29786 148574;148575;148576 149570;149571 149570 2 RGCLEGSQGTQALHK VSQLQIQFQGGFSSRRGCLEGSQGTQALHK RGCLEGSQGTQALHKIVDFYPEDNNSLQTF R R G H K I 1 1 0 0 1 2 1 3 1 0 2 1 0 0 0 1 1 0 0 0 0 0 15 1 1640.8053 Q86WQ0;U3KQ53 Q86WQ0 74 88 NR2C2AP Nuclear receptor 2C2-associated protein yes no 3 0.02323 18.138 By MS/MS 1 1.1398 1.0063 NaN 1 Median NaN NaN NaN 0 0 Median 1.1398 1.0063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 392230 231630 160610 0 0 0 392230 231630 160610 0 0 0 0 0 0 0 0 0 0 0 0 28312 3294 29787 148577 149572 149572 1 RGDALIEMESEQDVQK GENGIHFLLNRDGKRRGDALIEMESEQDVQ GDALIEMESEQDVQKALEKHRMYMGQRYVE R R G Q K A 1 1 0 2 0 2 3 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 16 1 1846.8731 H0Y8R1;F5H5I6;H0YAK1;Q12849;H0YAM1 H0Y8R1 130 145 GRSF1 G-rich sequence factor 1 yes no 3 3.9708E-12 113.29 By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 1.2458 1.1774 19.571 6 Median NaN NaN NaN 0 0 Median 1.2972 1.1854 NaN 1 0 Median 1.009 1.0247 NaN 1 0 Median 1.2692 1.2113 24.715 3 1 Plateau 1.3169 1.3655 NaN 1 0 Median NaN NaN NaN 0 0 Median 59007000 25916000 33091000 0 0 0 2046800 864700 1182100 20483000 10293000 10190000 32460000 12765000 19696000 4016900 1994000 2022900 0 0 0 28313 1035 29788;29789 148578;148579;148580;148581;148582;148583 149573;149574;149575;149576;149577;149578 149576 356 6 RGDDSFGDKYR RARPATDSFDDYPPRRGDDSFGDKYRDRYD YPPRRGDDSFGDKYRDRYDSDRYRDGYRDG R R G Y R D 0 2 0 3 0 0 0 2 0 0 0 1 0 1 0 1 0 0 1 0 0 0 11 2 1314.5953 E7EX17;P23588 E7EX17 215 225 EIF4B Eukaryotic translation initiation factor 4B yes no 3 0.030603 22.885 By MS/MS 1 1.1038 1.1292 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1038 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 991420 499070 492350 0 0 0 0 0 0 0 0 0 991420 499070 492350 0 0 0 0 0 0 28314 904 29790 148584 149579 149579 1 RGDFIHVMDNSDPNWWK LFDFDPQEDGELGFRRGDFIHVMDNSDPNW DFIHVMDNSDPNWWKGACHGQTGMFPRNYV R R G W K G 0 1 2 3 0 0 0 1 1 1 0 1 1 1 1 1 0 2 0 1 0 0 17 1 2115.9585 P62993 P62993 179 195 GRB2 Growth factor receptor-bound protein 2 yes yes 3 0.078119 3.6613 By matching By MS/MS 1 1 1.046 1.0418 7.4035 2 Median 0.93898 0.98869 NaN 1 0 Median 1.1653 1.0978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2946200 1377300 1568900 2265400 1082300 1183100 680810 294980 385830 0 0 0 0 0 0 0 0 0 0 0 0 28315 2613 29791 148585;148586 149580 149580 1 RGDFIPGLR GTSVERAAASTDYYKRGDFIPGLRVDGMDI STDYYKRGDFIPGLRVDGMDILCVREATRF K R G L R V 0 2 0 1 0 0 0 2 0 1 1 0 0 1 1 0 0 0 0 0 0 0 9 1 1029.572 P08559 P08559 245 253 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes yes 2 0.0012119 94.302 By MS/MS 1 0.96244 0.8988 NaN 1 Median NaN NaN NaN 0 0 Median 0.96244 0.8988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17588000 7987900 9600400 0 0 0 17588000 7987900 9600400 0 0 0 0 0 0 0 0 0 0 0 0 28316 1902 29792 148587 149581 149581 1 RGDIIGVQGNPGK YKSEEEFIHINNKLRRGDIIGVQGNPGKTK LRRGDIIGVQGNPGKTKKGELSIIPYEITL R R G G K T 0 1 1 1 0 1 0 4 0 2 0 1 0 0 1 0 0 0 0 1 0 0 13 1 1309.7102 Q15046;H3BVA8;J3KRL2;H3BPV7 Q15046 178 190 KARS Lysine--tRNA ligase yes no 2;3 9.4093E-07 134.3 By MS/MS By MS/MS 3 3 1.0923 1.0042 17.026 6 Median 1.2274 1.2374 17.583 3 1 Plateau 1.0771 0.98028 16.577 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28290000 11985000 16306000 3831500 1718100 2113400 24459000 10267000 14192000 0 0 0 0 0 0 0 0 0 0 0 0 28317 2919 29793 148588;148589;148590;148591;148592;148593 149582;149583;149584;149585 149583 4 RGDINLLMLGDPGTAK LFGGSRKRLPDGLTRRGDINLLMLGDPGTA GDINLLMLGDPGTAKSQLLKFVEKCSPIGV R R G A K S 1 1 1 2 0 0 0 3 0 1 3 1 1 0 1 0 1 0 0 0 0 0 16 1 1669.8821 P33992;B1AHB1 P33992 372 387 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 1.3655E-06 93.011 By MS/MS By MS/MS By matching By matching 3 3 2 1 0.84099 0.86446 28.941 9 Median 0.84099 0.86446 33.75 3 0 Median 0.89995 0.89069 43.64 3 0 Median 0.68082 0.74804 5.9141 2 0 Median 0.98496 0.94844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69375000 36573000 32802000 37161000 19176000 17985000 21412000 11243000 10170000 10303000 5899800 4403400 498070 253980 244090 0 0 0 0 0 0 28318 2224 29794 148594;148595;148596;148597;148598;148599;148600;148601;148602 149586;149587;149588;149589;149590;149591 149588 6 RGDIVFVDR YGFATIASAIPAYSKRGDIVFVDRAACFAI IPAYSKRGDIVFVDRAACFAIQKGLQASRS K R G D R A 0 2 0 2 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 9 1 1075.5774 O15269 O15269 181 189 SPTLC1 Serine palmitoyltransferase 1 yes yes 2 0.00040726 108.98 By MS/MS 1 1.155 1.0416 NaN 1 Median NaN NaN NaN 0 0 Median 1.155 1.0416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7513000 3711000 3802000 0 0 0 7513000 3711000 3802000 0 0 0 0 0 0 0 0 0 0 0 0 28319 1536 29795 148603 149592 149592 1 RGDKEAPPPVLLTPK EWETASESSDFTSERRGDKEAPPPVLLTPK RGDKEAPPPVLLTPKAVGTPGGGGGGAVPG R R G P K A 1 1 0 1 0 0 1 1 0 0 2 2 0 0 4 0 1 0 0 1 0 0 15 2 1616.925 P48634 P48634 1335 1349 PRRC2A Protein PRRC2A yes yes 3 0.00041279 41.378 By MS/MS 1 0.43978 0.46488 NaN 1 Median 0.43978 0.46488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1687400 1063400 624010 1687400 1063400 624010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28320 2363 29796 148604 149593 149593 1 RGDLPFVVPR DAMNREVSSLKNKLRRGDLPFVVPRRMARK KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R R G P R R 0 2 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 10 1 1154.656 P35579 P35579 1923 1932 MYH9 Myosin-9 yes yes 2 0.00048018 120.12 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 0.77276 0.7677 18.177 6 Median 0.91795 0.98166 NaN 1 0 Median 0.73819 0.73786 14.517 2 0 Median 0.74891 0.94605 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58524 0.63588 NaN 1 0 Median 0.79737 0.72082 NaN 1 0 Median 183030000 94746000 88288000 128040000 65100000 62938000 38176000 20440000 17736000 13355000 7502700 5852300 0 0 0 2750400 1288500 1461900 714490 414910 299580 28321 2244 29797 148605;148606;148607;148608;148609;148610 149594;149595;149596;149597;149598;149599;149600;149601 149598 8 RGDQLLSVNGVSVEGEHHEK RIIPGGIADRHGGLKRGDQLLSVNGVSVEG LSVNGVSVEGEHHEKAVELLKAAQGKVKLV K R G E K A 0 1 1 1 0 1 3 3 2 0 2 1 0 0 0 2 0 0 0 3 0 0 20 1 2189.0825 Q9NUP9;G3V1D4;O14910 Q9NUP9 136 155 LIN7C;LIN7A Protein lin-7 homolog C;Protein lin-7 homolog A yes no 4 6.9118E-09 69.763 By MS/MS 1 0.96364 0.89596 NaN 1 Median NaN NaN NaN 0 0 Median 0.96364 0.89596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4009800 1938900 2070900 0 0 0 4009800 1938900 2070900 0 0 0 0 0 0 0 0 0 0 0 0 28322 4117 29798 148611 149602;149603 149602 2 RGDTVATLSER VDAGQIILQEAVPVKRGDTVATLSERVKLA VPVKRGDTVATLSERVKLAEHKIFPAALQL K R G E R V 1 2 0 1 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 11 1 1203.6208 P22102 P22102 965 975 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2;3 0.010543 57.348 By MS/MS 2 0.60732 0.58551 36.194 2 Median NaN NaN NaN 0 0 Median 0.60732 0.58551 36.194 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8846100 5591900 3254200 0 0 0 8846100 5591900 3254200 0 0 0 0 0 0 0 0 0 0 0 0 28323 2098 29799 148612;148613 149604;149605 149604 2 RGDTYELQVR SAPTFINFPAKGKPKRGDTYELQVRGFSAE KGKPKRGDTYELQVRGFSAEQIARWIADRT K R G V R G 0 2 0 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 1 1235.6258 A0A087WU53;Q9H0U3 A0A087WU53 182 191 MAGT1 Magnesium transporter protein 1 yes no 2;3 0.00063094 120.45 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 1 1.5275 1.4893 49.439 9 Median 2.9077 3.1599 NaN 1 1 Median 1.6613 1.6915 19.364 2 0 Median 1.4364 1.4893 10.885 3 0 Median 1.6187 1.4797 33.935 2 0 Median NaN NaN NaN 0 0 Median 0.57234 0.50234 NaN 1 0 Median 41381000 16053000 25328000 6863000 2139800 4723200 18497000 6735000 11762000 12032000 5292300 6739800 1710200 740310 969850 0 0 0 2278000 1145400 1132600 28324 24 29800 148614;148615;148616;148617;148618;148619;148620;148621;148622;148623;148624 149606;149607;149608;149609;149610;149611;149612;149613;149614 149614 7 RGEAHLAVNDFELAR KALELDSNNEKGLFRRGEAHLAVNDFELAR RGEAHLAVNDFELARADFQKVLQLYPNNKA R R G A R A 3 2 1 1 0 0 2 1 1 0 2 0 0 1 0 0 0 0 0 1 0 0 15 1 1696.8645 Q02790 Q02790 359 373 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3;4 1.1141E-07 87.932 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.2035 1.1073 14.999 7 Median 1.0706 1.0812 19.948 2 0 Median 1.1035 0.99516 NaN 1 0 Median 1.1032 1.1916 22.6 2 0 Median 1.3002 1.1963 10.926 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103120000 49150000 53970000 43743000 25393000 18350000 3173500 1513500 1660000 46489000 17865000 28624000 9713800 4378200 5335600 0 0 0 0 0 0 28325 2701 29801 148625;148626;148627;148628;148629;148630;148631 149615;149616;149617;149618;149619;149620;149621;149622;149623 149623 9 RGEDMMHPLK FGFMGNQSRSRNGRRRGEDMMHPLKVSLED RNGRRRGEDMMHPLKVSLEDLYNGKTTKLQ R R G L K V 0 1 0 1 0 0 1 1 1 0 1 1 2 0 1 0 0 0 0 0 0 0 10 1 1212.5743 O60884;A0A087WT48 O60884 112 121 DNAJA2 DnaJ homolog subfamily A member 2 yes no 3 0.010139 30.331 By matching By MS/MS 3 1 0.97549 1.0187 31.843 4 Median 0.83688 0.84741 23.084 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6341 1.5706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5160900 2441300 2719600 2727500 1541400 1186100 0 0 0 0 0 0 2433400 899890 1533500 0 0 0 0 0 0 28326 1637 29802 148632;148633;148634;148635 149624 149624 1 RGEEGHDPKEPEQLR PPGRPQPDSGRRRRRRGEEGHDPKEPEQLR RGEEGHDPKEPEQLRKLFIGGLSFETTDDS R R G L R K 0 2 0 1 0 1 4 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 15 2 1775.8551 P51991 P51991 21 35 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 2.3795E-07 96.414 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 6 4 0.83778 0.9176 16.715 18 Median NaN NaN NaN 0 0 Median 0.83196 0.92175 NaN 1 0 Median 0.82451 0.99073 8.9086 3 0 Median 1.0298 0.97173 7.4493 4 0 Median 0.72507 0.83355 9.6692 6 2 Median 1.1926 1.1474 24.372 4 0 Median 52930000 29629000 23301000 0 0 0 351170 161120 190050 5117200 2875800 2241400 3766300 1971500 1794800 41568000 23644000 17923000 2128100 976570 1151600 28327 2446 29803 148636;148637;148638;148639;148640;148641;148642;148643;148644;148645;148646;148647;148648;148649;148650;148651;148652;148653 149625;149626;149627;149628;149629;149630;149631;149632;149633;149634;149635;149636;149637 149632 13 RGEFCIAK DIASHPPVEGSYAPRRGEFCIAKFVDGEWY EGSYAPRRGEFCIAKFVDGEWYRARVEKVE R R G A K F 1 1 0 0 1 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 8 1 979.49094 Q7KZF4;H7C597 Q7KZF4 732 739 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 0.030429 45.68 By MS/MS 1 1.2964 1.2104 NaN 1 Median NaN NaN NaN 0 0 Median 1.2964 1.2104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7147200 3015200 4132000 0 0 0 7147200 3015200 4132000 0 0 0 0 0 0 0 0 0 0 0 0 28328 3214 29804 148654 149638 149638 1 RGEGAEPQYVDK KLREKLKEEENTVGRRGEGAEPQYVDKFGF VGRRGEGAEPQYVDKFGFHTVTCCGFIPQV R R G D K F 1 1 0 1 0 1 2 2 0 0 0 1 0 0 1 0 0 0 1 1 0 0 12 1 1347.6419 Q9H479 Q9H479 131 142 FN3K Fructosamine-3-kinase yes yes 3 0.047695 14.084 By matching By MS/MS 1 1 0.71547 0.73185 36.29 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51069 0.56621 NaN 1 0 Median 1.0024 0.94594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1172000 638520 533510 0 0 0 0 0 0 401140 274570 126570 770890 363950 406940 0 0 0 0 0 0 28329 3962 29805 148655;148656 149639 149639 1 RGEHVALANWQNHASLR FVSNELDDPDDLQCKRGEHVALANWQNHAS EHVALANWQNHASLRLLNLVYDVTPPELVD K R G L R L 3 2 2 0 0 1 1 1 2 0 2 0 0 0 0 1 0 1 0 1 0 0 17 1 1957.9983 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 464 480 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 4 5.0591E-06 63.337 By MS/MS By matching By matching By matching 1 1 1 2 1.3915 1.2965 37.573 5 Median 1.1591 1.142 NaN 1 0 Median 1.4607 1.3266 NaN 1 0 Median 2.511 2.7121 NaN 1 0 Median 1.2659 1.1721 14.272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17392000 7619400 9772500 7609300 3727900 3881400 2583500 1021400 1562100 2223200 704120 1519100 4975900 2165900 2809900 0 0 0 0 0 0 28330 16 29806 148657;148658;148659;148660;148661 149640;149641 149641 2 RGEIIDNDTEEEFYLR VADKKIEGEKHDMVRRGEIIDNDTEEEFYL GEIIDNDTEEEFYLRRLDAGLFVLQHICYI R R G L R R 0 2 1 2 0 0 4 1 0 2 1 0 0 1 0 0 1 0 1 0 0 0 16 1 1997.933 Q8WYA6;A0A087WUB9 Q8WYA6 469 484 CTNNBL1 Beta-catenin-like protein 1 yes no 3 9.2847E-08 96.163 By matching By matching By MS/MS 1 1 2 0.87934 0.88525 20.01 4 Median 1.0842 1.0878 NaN 1 0 Median 0.88626 0.8049 NaN 1 0 Median 0.74821 0.82142 24.038 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18938000 9192100 9746000 8302200 4190700 4111500 2007200 718270 1288900 8628700 4283100 4345600 0 0 0 0 0 0 0 0 0 28331 28 29807 148662;148663;148664;148665 149642 149642 1 RGEVPAELR SYQDPSNAQFLESIRRGEVPAELRRLAHGG FLESIRRGEVPAELRRLAHGGQVNLDMEDH R R G L R R 1 2 0 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1025.5618 Q9UNZ2;F2Z2K0 Q9UNZ2 215 223 NSFL1C NSFL1 cofactor p47 yes no 2 0.0083613 65.224 By MS/MS 1 0.94351 0.88112 NaN 1 Median NaN NaN NaN 0 0 Median 0.94351 0.88112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2687300 1318300 1369000 0 0 0 2687300 1318300 1369000 0 0 0 0 0 0 0 0 0 0 0 0 28332 4353 29808 148666 149643 149643 1 RGFAFVTFDDHDSVDK IEVIEIMTDRGSGKKRGFAFVTFDDHDSVD GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE K R G D K I 1 1 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 16 1 1854.8537 H0YH80;P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2 P09651 146 161 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2;3;4 3.2948E-05 59.862 By matching By MS/MS By MS/MS By MS/MS By matching 2 4 4 2 3 1.115 1.1259 18.967 15 Median NaN NaN NaN 0 0 Median 1.408 1.3249 32.591 2 0 Median 1.0641 1.1834 12.751 4 1 Median 1.269 1.1139 26.403 4 0 Median 1.0565 1.1701 5.4475 2 0 Median 1.1925 1.0674 9.281 3 0 Plateau 232620000 109210000 123410000 0 0 0 3786300 1500600 2285800 204430000 96471000 107960000 4269900 1936200 2333700 15307000 7208300 8098900 4828100 2094300 2733800 28333 1919;365;1183 29809 148667;148668;148669;148670;148671;148672;148673;148674;148675;148676;148677;148678;148679;148680;148681 149644;149645;149646;149647;149648;149649;149650;149651;149652;149653;149654;149655 149644 12 RGFAFVTFDDHDSVDKIVIQK IEVIEIMTDRGSGKKRGFAFVTFDDHDSVD TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL K R G Q K Y 1 1 0 4 0 1 0 1 1 2 0 2 0 3 0 1 1 0 0 3 0 0 21 2 2436.2438 H0YH80;P09651;F8W6I7;F8VZ49;Q32P51;F8VTQ5;A0A2R8Y4L2 P09651 146 166 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 4 0.028357 21.398 By MS/MS 1 0.96354 1.1231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96354 1.1231 NaN 1 1 Median NaN NaN NaN 0 0 Median 5676700 2451000 3225700 0 0 0 0 0 0 0 0 0 0 0 0 5676700 2451000 3225700 0 0 0 28334 1919;365;1183 29810 148682 149656 149656 1 RGFAFVTFDDHDTVDK IETIEVMEDRQSGKKRGFAFVTFDDHDTVD GFAFVTFDDHDTVDKIVVQKYHTINGHNCE K R G D K I 1 1 0 4 0 0 0 1 1 0 0 1 0 3 0 0 2 0 0 2 0 0 16 1 1868.8693 P51991 P51991 167 182 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3 2.0857E-05 74.141 By MS/MS By matching By matching 2 1 1 1.3078 1.2519 15.895 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2927 1.4402 23.343 2 0 Median 1.4572 1.2834 NaN 1 0 Median 1.1737 1.2184 NaN 1 0 Median NaN NaN NaN 0 0 Median 59399000 27618000 31781000 0 0 0 0 0 0 54952000 25971000 28981000 667440 230000 437440 3779900 1417100 2362800 0 0 0 28335 2446 29811 148683;148684;148685;148686 149657;149658;149659;149660 149658 4 RGFAFVTFDDHDTVDKIVVQK IETIEVMEDRQSGKKRGFAFVTFDDHDTVD TFDDHDTVDKIVVQKYHTINGHNCEVKKAL K R G Q K Y 1 1 0 4 0 1 0 1 1 1 0 2 0 3 0 0 2 0 0 4 0 0 21 2 2436.2438 P51991 P51991 167 187 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 4 0.024999 14.31 By MS/MS By matching By MS/MS 2 1 1 1.0936 1.2157 4.7759 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0417 1.1738 1.7191 2 0 Median 1.2435 1.2439 NaN 1 0 Median 1.1285 1.2909 NaN 1 0 Median NaN NaN NaN 0 0 Median 14838000 7362000 7476400 0 0 0 0 0 0 11615000 5769300 5846200 142490 55545 86949 3080400 1537200 1543200 0 0 0 28336 2446 29812 148687;148688;148689;148690 149661;149662 149661 2 RGFCFITYTDEEPVKK IENIELPMDTKTNERRGFCFITYTDEEPVK GFCFITYTDEEPVKKLLESRYHQIGSGKCE R R G K K L 0 1 0 1 1 0 2 1 0 1 0 2 0 2 1 0 2 0 1 1 0 0 16 2 1988.9666 A0A087WUK2;O14979 A0A087WUK2 274 289 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 3 0.0027264 28.956 By MS/MS By matching 1 2 0.86334 0.98759 25.077 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57332 0.64928 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86754 1.0018 2.0135 2 0 Median NaN NaN NaN 0 0 Median 15966000 8981100 6985100 0 0 0 0 0 0 4559900 2928900 1631000 0 0 0 11406000 6052200 5354100 0 0 0 28337 32 29813 148691;148692;148693 149663 149663 1 RGFGFVTFDDHDPVDK IDTIEIITDRQSGKKRGFGFVTFDDHDPVD GFGFVTFDDHDPVDKIVLQKYHTINGHNAE K R G D K I 0 1 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 16 1 1850.8588 P22626;A0A087WUI2 P22626 153 168 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 3;4 0.00031685 52.823 By MS/MS By matching By MS/MS 3 1 3 0.99311 1.056 11.263 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0239 1.1405 13.882 2 0 Median 1.247 1.1768 NaN 1 0 Median 0.94141 1.0254 8.5575 3 0 Median NaN NaN NaN 0 0 Median 38580000 18044000 20536000 0 0 0 0 0 0 23755000 11143000 12611000 273180 101300 171880 14552000 6799500 7752900 0 0 0 28338 2103 29814 148694;148695;148696;148697;148698;148699;148700 149664;149665;149666;149667;149668 149666 5 RGFGFVTFDDHDPVDKIVLQK IDTIEIITDRQSGKKRGFGFVTFDDHDPVD TFDDHDPVDKIVLQKYHTINGHNAEVRKAL K R G Q K Y 0 1 0 4 0 1 0 2 1 1 1 2 0 3 1 0 1 0 0 3 0 0 21 2 2432.2488 P22626;A0A087WUI2 P22626 153 173 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 4 0.0023068 25.888 By MS/MS By matching 2 1 0.90987 1.059 5.9468 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90176 1.0413 2.5925 2 0 Median 1.0135 0.94407 NaN 1 0 Median 13073000 6656800 6415800 0 0 0 0 0 0 0 0 0 0 0 0 12911000 6573000 6337600 162090 83871 78220 28339 2103 29815 148701;148702;148703 149669;149670;149671 149671 3 RGFGFVYFQNHDAADK VEKAEIIADKQSGKKRGFGFVYFQNHDAAD GFGFVYFQNHDAADKAAVVKFHPIQGHRVE K R G D K A 2 1 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 16 1 1870.8751 Q13151 Q13151 139 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3;4 0.0096807 23.336 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.2131 1.1835 13.962 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90821 0.9876 NaN 1 0 Median 1.5126 1.4274 NaN 1 0 Median 1.1486 1.2443 7.0829 2 0 Median 1.2728 1.1442 NaN 1 0 Median 20863000 10688000 10175000 0 0 0 0 0 0 6102400 3623300 2479100 989070 408320 580750 11363000 5771900 5591000 2409100 884960 1524100 28340 2790 29816 148704;148705;148706;148707;148708 149672;149673;149674;149675 149672 4 RGFGFVYFQNHDAADKAAVVK VEKAEIIADKQSGKKRGFGFVYFQNHDAAD YFQNHDAADKAAVVKFHPIQGHRVEVKKAV K R G V K F 4 1 1 2 0 1 0 2 1 0 0 2 0 3 0 0 0 0 1 3 0 0 21 2 2339.1811 Q13151 Q13151 139 159 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 4 0.04608 10.868 By MS/MS 1 0.94794 1.1049 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94794 1.1049 NaN 1 0 Median NaN NaN NaN 0 0 Median 5409400 2889000 2520400 0 0 0 0 0 0 0 0 0 0 0 0 5409400 2889000 2520400 0 0 0 28341 2790 29817 148709 149676 149676 1 RGFTLVGMK VQRRLVGDVIQRFERRGFTLVGMKMLQAPE IQRFERRGFTLVGMKMLQAPESVLAEHYQD R R G M K M 0 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 1 0 0 9 1 1007.5586 Q4TT34;F2Z2X0;O00746;H0Y6J0;A0A087WVT9 Q4TT34 72 80 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2 0.001339 89.355 By MS/MS By MS/MS 1 1 0.77383 0.78309 3.1462 2 Median 0.7772 0.76586 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77047 0.80071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21781000 12083000 9697700 14749000 8289100 6460200 0 0 0 7031600 3794000 3237600 0 0 0 0 0 0 0 0 0 28342 992 29818 148710;148711 149677;149678;149679;149680 149677 4 RGFVFITFK IEAIELPMDPKLNKRRGFVFITFKEEEPVK PKLNKRRGFVFITFKEEEPVKKVLEKKFHT R R G F K E 0 1 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 1 0 0 9 1 1113.6335 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 195 203 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 2 0.0086448 64.757 By matching By matching By MS/MS By matching By matching 1 1 2 1 2 1.1374 1.0364 17.373 7 Median 0.78264 0.83722 NaN 1 0 Median 1.3909 1.2975 NaN 1 0 Median 0.90621 1.0073 26.799 2 1 Median 1.2544 1.1121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1633 0.99343 5.9925 2 0 Median 10055000 5459800 4594700 1327300 619020 708320 758230 314660 443570 7460700 4286800 3173900 207050 89055 118000 0 0 0 301150 150260 150900 28343 805 29819 148712;148713;148714;148715;148716;148717;148718 149681;149682 149682 2 RGGADVNIR GWRPRRLGGGLGGTRRGGADVNIRHSGRDD GLGGTRRGGADVNIRHSGRDDTSRYDERPG R R G I R H 1 2 1 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 9 1 956.51518 P08621 P08621 201 209 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0036881 70.919 By matching By MS/MS By matching By MS/MS By matching 1 2 2 2 1 1.0518 1.0834 10.691 8 Median 1.0998 1.0836 NaN 1 0 Median 1.0584 0.9579 11.435 2 0 Median 1.0163 1.0991 1.16 2 0 Median NaN NaN NaN 0 0 Median 1.0865 1.1692 10.799 2 0 Median 1.0783 0.94842 NaN 1 0 Median 6128200 2853800 3274400 551310 247860 303450 1689200 769960 919200 1484000 689040 794930 0 0 0 2277600 1095300 1182200 126180 51598 74578 28344 1905 29820 148719;148720;148721;148722;148723;148724;148725;148726 149683;149684;149685 149684 3 RGGFEEPVLLK DYKTWGPEQVCSFLRRGGFEEPVLLKNIRE SFLRRGGFEEPVLLKNIRENEITGALLPCL R R G L K N 0 1 0 0 0 0 2 2 0 0 2 1 0 1 1 0 0 0 0 1 0 0 11 1 1243.6925 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90;A0A2R8YF51;A0A2R8Y5D2;A0A2R8Y586;A0A2R8YG48;A0A2R8Y7R5;A0A2R8Y755 Q9Y3Z3 56 66 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.027878 35.224 By MS/MS By matching 1 1 1.3467 1.2931 8.0597 2 Median 1.3638 1.3689 NaN 1 0 Median 1.3298 1.2215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9838300 3823600 6014800 7879300 3042400 4836900 1959000 781130 1177900 0 0 0 0 0 0 0 0 0 0 0 0 28345 4436 29821 148727;148728 149686 149686 1 RGGMIVDPLR PFVVGGEDLDPFGPRRGGMIVDPLRSGFPR PFGPRRGGMIVDPLRSGFPRALIDPSSGLP R R G L R S 0 2 0 1 0 0 0 2 0 1 1 0 1 0 1 0 0 0 0 1 0 0 10 1 1112.6124 Q5QPM7;Q92530;H0Y555;F5H4Z3 Q5QPM7 205 214 PSMF1 Proteasome inhibitor PI31 subunit yes no 2 0.0012695 83.265 By MS/MS 1 1.0547 1.1354 NaN 1 Median 1.0547 1.1354 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18717000 8906600 9810400 18717000 8906600 9810400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28346 3069 29822 148729 149687 149687 1 RGGNRFEPYANPTK ERPAQNEKRKEKNIKRGGNRFEPYANPTKR KRGGNRFEPYANPTKRYRAFITNIPFDVKW K R G T K R 1 2 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 14 2 1605.8012 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 56 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 0.040043 17.546 By MS/MS By matching 1 1 0.71212 0.81782 72.745 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43584 0.48895 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1636 1.3679 NaN 1 0 Median NaN NaN NaN 0 0 Median 12804000 7516900 5287600 0 0 0 0 0 0 2497000 1699900 797130 0 0 0 10307000 5817000 4490400 0 0 0 28347 116 29823 148730;148731 149688 149688 1 RGGPNYQEGLR YQGPLKEHEVTIFVRRGGPNYQEGLRVMGE IFVRRGGPNYQEGLRVMGEVGKTTGIPIHV R R G L R V 0 2 1 0 0 1 1 3 0 0 1 0 0 0 1 0 0 0 1 0 0 0 11 1 1245.6214 P53396;K7EIE7 P53396 379 389 ACLY ATP-citrate synthase yes no 2;3 0.00010938 112.3 By MS/MS By MS/MS 1 3 1.0879 1.0383 11.564 4 Linear 0.73424 0.81576 NaN 1 1 Median 1.0881 1.0491 4.4938 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43831000 20707000 23124000 2024500 989580 1034900 41806000 19717000 22089000 0 0 0 0 0 0 0 0 0 0 0 0 28348 2467 29824 148732;148733;148734;148735 149689;149690;149691;149692 149690 4 RGGPPFAFVEFEDPR FYKYGAIRDIDLKNRRGGPPFAFVEFEDPR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD R R G P R D 1 2 0 1 0 0 2 2 0 0 0 0 0 3 3 0 0 0 0 1 0 0 15 1 1719.8369 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 51 65 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3 0.003182 27.335 By MS/MS 1 0.709 0.74002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.709 0.74002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2804000 1741900 1062100 0 0 0 0 0 0 2804000 1741900 1062100 0 0 0 0 0 0 0 0 0 28349 1337 29825 148736 149693;149694 149693 2 RGGVSGFGVPPASMR FLSTPQFLYRWLPSRRGGVSGFGVPPASMR RGGVSGFGVPPASMRRAADQNGGGGRHNWG R R G M R R 1 2 0 0 0 0 0 4 0 0 0 0 1 1 2 2 0 0 0 2 0 0 15 1 1473.7511 B4E1G1;E5RGY0;Q9BUN8 B4E1G1 114 128 DERL1 Derlin-1 yes no 3 0.0024521 30.332 By MS/MS By matching 1 1 0.92128 0.98454 3.3458 2 Median 0.92768 1.0081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91493 0.96152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4541800 2012800 2529000 2956100 1433000 1523100 0 0 0 1585700 579860 1005900 0 0 0 0 0 0 0 0 0 28350 613 29826 148737;148738 149695 149695 1 RGHVFEESQVAGTPMFVVK PEQVVGGIYGVLNRKRGHVFEESQVAGTPM FEESQVAGTPMFVVKAYLPVNESFGFTADL K R G V K A 1 1 0 0 0 1 2 2 1 0 0 1 1 2 1 1 1 0 0 4 0 0 19 1 2117.0728 P13639 P13639 767 785 EEF2 Elongation factor 2 yes yes 3 2.6777E-08 64.83 By MS/MS 2 1.0498 1.0862 4.5717 2 Median 1.0498 1.0862 4.5717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33106000 15592000 17514000 33106000 15592000 17514000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28351 1992 29827 148739;148740 149696;149697 149697 2 RGHVTQDAPIPGSPLYTIK PADCVSAVYTVLARRRGHVTQDAPIPGSPL TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R R G I K A 1 1 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 19 1 2049.1007 Q15029 Q15029 854 872 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3 3.2201E-07 58.997 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.68944 0.71749 25.253 5 Median 0.68944 0.71749 NaN 1 0 Median 0.85874 0.8245 NaN 1 0 Median 0.41706 0.47328 NaN 1 0 Median 0.89239 0.8576 NaN 1 0 Median 0.51917 0.57089 NaN 1 0 Median NaN NaN NaN 0 0 Median 19260000 11946000 7313900 5110600 2846100 2264600 643130 316160 326960 6109000 4410600 1698400 2179100 1116200 1062800 5218200 3257000 1961200 0 0 0 28352 2917 29828 148741;148742;148743;148744;148745 149698;149699;149700 149700 3 RGIIGYDV TEVLMWFYVGEIIGKRGIIGYDV_______ VGEIIGKRGIIGYDV_______________ K R G D V - 0 1 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 1 0 0 8 1 891.48142 O75964 O75964 96 103 ATP5L ATP synthase subunit g, mitochondrial yes yes 2 0.02061 50.966 By MS/MS By MS/MS 1 1 1.2237 1.0864 2.4431 2 Median 1.1342 1.1054 NaN 1 0 Median 1.3202 1.0678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6161200 2747200 3414000 4695900 2199500 2496400 1465300 547730 917600 0 0 0 0 0 0 0 0 0 0 0 0 28353 1713 29829 148746;148747 149701;149702;149703 149701 3 RGILTLK MGQKDSYVGDEAQSKRGILTLKYPIEHGIV VGDEAQSKRGILTLKYPIEHGIVTNWDDME K R G L K Y 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 1 799.52797 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1;C9JTX5;P68032;P68133;A6NL76;Q6S8J3;A5A3E0;P0CG38;P0CG39 P63261 62 68 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEI;POTEJ Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J no no 2 0.0038923 106.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 9 5 5 6 6 1.2354 1.1641 17.13 38 Median 1.2736 1.3551 21.745 7 0 Median 1.2356 1.1061 16.028 9 0 Median 0.94077 1.0284 7.0873 5 0 Median 1.337 1.2411 10.369 5 0 Median 1.1353 1.2397 23.527 6 0 Median 1.4083 1.1715 12.926 6 0 Median 1411100000 611710000 799400000 310520000 139660000 170870000 726520000 296260000 430260000 168120000 82788000 85337000 78072000 32963000 45109000 78174000 38770000 39403000 49698000 21280000 28418000 28354 2625;2630;2595;3181 29830 148748;148749;148750;148751;148752;148753;148754;148755;148756;148757;148758;148759;148760;148761;148762;148763;148764;148765;148766;148767;148768;148769;148770;148771;148772;148773;148774;148775;148776;148777;148778;148779;148780;148781;148782;148783;148784;148785 149704;149705;149706;149707;149708;149709;149710;149711;149712;149713;149714;149715;149716;149717;149718;149719;149720;149721;149722;149723;149724;149725;149726;149727;149728;149729;149730;149731;149732;149733;149734;149735;149736;149737;149738 149729 35 RGLDDDRGPWR DRGPRRGMDDDRGPRRGLDDDRGPWRNADD RGPRRGLDDDRGPWRNADDDRIPRRGAEDD R R G W R N 0 3 0 3 0 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 2 1341.6538 Q14152 Q14152 1111 1121 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 3.6549E-05 122.51 By MS/MS By MS/MS 1 1 0.89768 1.0043 3.0568 2 Median 0.88174 0.98278 NaN 1 0 Median 0.91391 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12876000 6973300 5902900 9100000 5030100 4069900 3776200 1943200 1833000 0 0 0 0 0 0 0 0 0 0 0 0 28355 2860 29831 148786;148787 149739;149740;149741;149742;149743;149744 149742 6 RGLDEDRGSWR DRGNWRHADDDRPPRRGLDEDRGSWRTADE RPPRRGLDEDRGSWRTADEDRGPRRGMDDD R R G W R T 0 3 0 2 0 0 1 2 0 0 1 0 0 0 0 1 0 1 0 0 0 0 11 2 1345.6487 Q14152 Q14152 1020 1030 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 6.415E-05 106 By MS/MS By matching 2 1 1.3086 1.0921 12.21 3 Median 1.174 1.207 15.214 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3086 1.0921 NaN 1 0 Median 7110300 3249100 3861200 6773700 3117300 3656400 0 0 0 0 0 0 0 0 0 0 0 0 336620 131800 204820 28356 2860 29832 148788;148789;148790 149745;149746 149746 2 RGLGAGAGAGEESPATSLPR LVLLGAYRLWVRWGRRGLGAGAGAGEESPA GAGAGEESPATSLPRMKKRDFSLEQLRQYD R R G P R M 4 2 0 0 0 0 2 5 0 0 2 0 0 0 2 2 1 0 0 0 0 0 20 1 1852.9391 O15173 O15173 78 97 PGRMC2 Membrane-associated progesterone receptor component 2 yes yes 3 1.0212E-10 89.507 By MS/MS By MS/MS By matching 1 2 1 0.90504 0.88214 7.2126 4 Median 0.80021 0.85537 NaN 1 0 Median 1.0461 0.92206 10.839 2 0 Median 0.87741 0.90973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26198000 12211000 13986000 15460000 7392800 8067100 6884200 3155300 3728900 3853500 1663100 2190400 0 0 0 0 0 0 0 0 0 28357 1529 29833 148791;148792;148793;148794 149747;149748;149749;149750;149751 149749 5 RGLQQITGHGGLR ______________________________ LKRGLQQITGHGGLRGYLRVFFRTNDAKVG K R G L R G 0 2 0 0 0 2 0 4 1 1 2 0 0 0 0 0 1 0 0 0 0 0 13 1 1391.7746 Q9UI09;F8VRD8;F8VXI1;H0YID5 Q9UI09 9 21 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 3 0.0034873 35.204 By MS/MS By matching By MS/MS 1 1 2 0.9892 1.0369 29.584 3 Median 0.9892 1.0369 NaN 1 0 Median 1.3141 1.2021 NaN 1 0 Median 0.62595 0.67977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2831000 1377600 1453400 1577200 749810 827350 379770 144310 235460 874030 483440 390590 0 0 0 0 0 0 0 0 0 28358 4286 29834 148795;148796;148797;148798 149752;149753;149754 149752 3 RGPAEESSSWR REDRFRRPRDEGGWRRGPAEESSSWRDSSR GGWRRGPAEESSSWRDSSRRDDRDRDDRRR R R G W R D 1 2 0 0 0 0 2 1 0 0 0 0 0 0 1 3 0 1 0 0 0 0 11 1 1260.5847 Q14152 Q14152 1250 1260 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.0018091 42.095 By MS/MS By MS/MS 1 1 1.2979 1.3488 8.1392 2 Median 1.336 1.4287 NaN 1 0 Median 1.261 1.2734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2782600 1155500 1627100 1079400 447060 632310 1703200 708420 994760 0 0 0 0 0 0 0 0 0 0 0 0 28359 2860 29835 148799;148800 149755;149756 149756 2 RGPAPQDQAGPGGAPR LFRIFIIWAISSWFRRGPAPQDQAGPGGAP GPAPQDQAGPGGAPRVASRNLFPKDTLMNL R R G P R V 3 2 0 1 0 2 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 16 1 1530.7651 O96005;K7EQQ1 O96005 75 90 CLPTM1 Cleft lip and palate transmembrane protein 1 yes no 3 0.0044511 39.685 By MS/MS 1 0.54911 0.51466 NaN 1 Median NaN NaN NaN 0 0 Median 0.54911 0.51466 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1454200 943790 510420 0 0 0 1454200 943790 510420 0 0 0 0 0 0 0 0 0 0 0 0 28360 1805 29836 148801 149757 149757 1 RGPAVLATK AELISDEAQADLALRRGPAVLATKAAAGTK ADLALRRGPAVLATKAAAGTKKYDLSKWKY R R G T K A 2 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 1 911.55525 A0A0A0MRM8 A0A0A0MRM8 1036 1044 MYO6 yes yes 2 0.0087024 55.531 By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 1 1 1.058 0.99844 27.232 9 Median 0.90423 0.91149 3.3925 2 0 Median 1.1351 1.0647 6.3035 2 0 Median 0.76931 0.86733 51.083 2 0 Median 1.058 0.99844 NaN 1 0 Median 0.49108 0.55278 NaN 1 0 Median 1.1143 1.0349 NaN 1 0 Median 7929600 3842100 4087500 960980 487920 473060 2915100 1350500 1564600 1191400 543990 647400 2343100 1148200 1194900 421840 272840 149000 97176 38608 58568 28361 164 29837 148802;148803;148804;148805;148806;148807;148808;148809;148810 149758 149758 1 RGPCIIYNEDNGIIK RAGKGKMRNRRRIQRRGPCIIYNEDNGIIK RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R R G I K A 0 1 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 15 1 1760.888 P36578;H3BM89 P36578 205 219 RPL4 60S ribosomal protein L4 yes no 2 3.0876E-06 93.058 By matching By MS/MS 1 1 0.94457 0.91262 24.355 2 Median NaN NaN NaN 0 0 Median 0.84055 0.76824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0615 1.0841 NaN 1 0 Median NaN NaN NaN 0 0 Median 17202000 8636500 8565300 0 0 0 1114300 572340 541950 0 0 0 0 0 0 16088000 8064100 8023400 0 0 0 28362 2260 29838 148811;148812 149759 149759 1 RGPEEDRFSR DRVPRRGMDDDRGPRRGPEEDRFSRRGADD DRGPRRGPEEDRFSRRGADDDRPSWRNTDD R R G S R R 0 3 0 1 0 0 2 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 10 2 1247.6007 Q14152 Q14152 970 979 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.023729 25.474 By MS/MS By matching 1 1 1.0442 1.0257 11.043 2 Median 0.85111 0.94864 NaN 1 0 Median 1.2812 1.109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2423500 1202800 1220800 1815300 954200 861130 608200 248560 359630 0 0 0 0 0 0 0 0 0 0 0 0 28363 2860 29839 148813;148814 149760;149761;149762 149762 3 RGPGLYYVDSEGNR GMGLSMGTMICGWDKRGPGLYYVDSEGNRI KRGPGLYYVDSEGNRISGATFSVGSGSVYA K R G N R I 0 2 1 1 0 0 1 3 0 0 1 0 0 0 1 1 0 0 2 1 0 0 14 1 1581.7536 P28074 P28074 166 179 PSMB5 Proteasome subunit beta type-5 yes yes 3 1.4108E-08 117.93 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0071 0.95953 58.232 6 Median 0.84126 0.89048 17.774 2 0 Median 0.96544 0.85098 9.7682 2 0 Median 1.8228 1.8949 NaN 1 0 Median 3.7541 3.3232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56785000 27271000 29514000 35897000 19082000 16815000 11326000 5447500 5878300 6638600 2066300 4572400 2923900 674760 2249200 0 0 0 0 0 0 28364 2162 29840 148815;148816;148817;148818;148819;148820 149763;149764;149765;149766;149767;149768 149764 5 RGPLAGLGPGSTPR FPAAPSPRTPGTGSRRGPLAGLGPGSTPRT RRGPLAGLGPGSTPRTASRKGLPLGSAVSS R R G P R T 1 2 0 0 0 0 0 4 0 0 2 0 0 0 3 1 1 0 0 0 0 0 14 1 1334.7419 Q8WUM0 Q8WUM0 17 30 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 1.59E-05 125.97 By MS/MS By MS/MS 2 1 0.75729 0.82633 8.8929 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63802 0.77597 NaN 1 0 Median 0.89885 0.87997 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34925000 20627000 14298000 0 0 0 0 0 0 28347000 17349000 10998000 6578300 3277500 3300700 0 0 0 0 0 0 28365 3492 29841 148821;148822;148823 149769;149770;149771;149772 149769 4 RGPLGPNWK KADEDPALFQSVKTKRGPLGPNWKKELANS QSVKTKRGPLGPNWKKELANSPDCPQMCAY K R G W K K 0 1 1 0 0 0 0 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 9 1 1023.5614 P48739;A0A0A0MSW4;B3KYB6 P48739 170 178 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 2 0.0018964 82.671 By MS/MS By MS/MS 1 1 0.76961 0.73258 3.9507 2 Median 0.75027 0.75333 NaN 1 0 Median 0.78945 0.7124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14522000 8273900 6247900 11265000 6411700 4853600 3256500 1862200 1394300 0 0 0 0 0 0 0 0 0 0 0 0 28366 2368 29842 148824;148825 149773;149774;149775 149774 3 RGPLQVAFTIK VLRQSRVKTVWLVGRRGPLQVAFTIKELRE LVGRRGPLQVAFTIKELREMIQLPGARPIL R R G I K E 1 1 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 0 1 0 0 11 1 1228.7292 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 229 239 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2;3 0.00019379 85.731 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.251 1.1987 47.27 6 Median 0.76345 0.76281 NaN 1 0 Median 1.6621 1.5082 NaN 1 0 Median 0.83142 0.84174 17.515 2 0 Median 2.1383 2.0557 3.7075 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21501000 10325000 11176000 3895600 2333300 1562300 209900 70938 138960 10681000 5776000 4905300 6714100 2144300 4569800 0 0 0 0 0 0 28367 2102 29843 148826;148827;148828;148829;148830;148831 149776;149777;149778;149779;149780 149779 5 RGPNYTSGYGTNSELSNPSETESER RQIGSRSYSGRGRGRRGPNYTSGYGTNSEL TNSELSNPSETESERKDELSDWSLAGEDDR R R G E R K 0 2 3 0 0 0 4 3 0 0 1 0 0 0 2 5 3 0 2 0 0 0 25 1 2731.1958 B4DXZ6;P51114;E7EU85;E9PFF5 B4DXZ6 378 402 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 1.4382E-36 124 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 0.77175 0.74115 17.385 9 Median 0.6321 0.6353 5.4368 2 0 Median 0.77248 0.73225 1.7092 2 0 Median 0.7854 0.86225 16.513 2 0 Median 0.97114 0.90488 19.578 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62832000 33189000 29643000 15939000 8500000 7438700 11086000 5991400 5094100 22894000 12508000 10386000 12914000 6190100 6723700 0 0 0 0 0 0 28368 608 29844 148832;148833;148834;148835;148836;148837;148838;148839;148840 149781;149782;149783;149784;149785;149786;149787;149788;149789;149790;149791 149784 11 RGPPPPPR IKVEQATKPSFESGRRGPPPPPRSRGPPRG PSFESGRRGPPPPPRSRGPPRGLRGGRGGS R R G P R S 0 2 0 0 0 0 0 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 8 1 872.49807 P38159;H3BT71;H0Y6E7 P38159 94 101 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 0.0099427 68.915 By matching By MS/MS 1 4 0.41539 0.44338 3.349 5 Median NaN NaN NaN 0 0 Median 0.49267 0.4601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43071 0.45751 3.125 4 0 Linear NaN NaN NaN 0 0 Median 2623600 1796400 827240 0 0 0 89569 58078 31492 0 0 0 0 0 0 2534100 1738300 795750 0 0 0 28369 2273 29845 148841;148842;148843;148844;148845 149792;149793;149794 149792 3 RGPPPPPTASEPTR ERRKLIVAYVDDLDRRGPPPPPTASEPTRR RRGPPPPPTASEPTRRSTK___________ R R G T R R 1 2 0 0 0 0 1 1 0 0 0 0 0 0 6 1 2 0 0 0 0 0 14 1 1458.7579 O14776 O14776 1081 1094 TCERG1 Transcription elongation regulator 1 yes yes 3 0.028495 28.812 By MS/MS By MS/MS 1 1 0.33401 0.32699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33401 0.32699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 570780 434700 136090 0 0 0 0 0 0 0 0 0 570780 434700 136090 0 0 0 0 0 0 28370 1494 29846 148846;148847 149795;149796 149796 2 RGQHWLLDGFPR DHVITRLMMSELENRRGQHWLLDGFPRTLG ENRRGQHWLLDGFPRTLGQAEALDKICEVD R R G P R T 0 2 0 1 0 1 0 2 1 0 2 0 0 1 1 0 0 1 0 0 0 0 12 1 1480.7688 P27144;D3DQ64 P27144 81 92 AK4 Adenylate kinase 4, mitochondrial yes no 3 0.0032023 35.737 By MS/MS By matching 1 1 1.0158 0.96781 1.7362 2 Median 0.91658 0.97976 NaN 1 0 Median 1.1257 0.956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7566900 3833700 3733200 6401600 3272400 3129200 1165200 561270 603970 0 0 0 0 0 0 0 0 0 0 0 0 28371 2151 29847 148848;148849 149797 149797 1 RGQTCVVHYTGMLEDGKK QVETISPGDGRTFPKRGQTCVVHYTGMLED TCVVHYTGMLEDGKKFDSSRDRNKPFKFML K R G K K F 0 1 0 1 1 1 1 3 1 0 1 2 1 0 0 0 2 0 1 2 0 0 18 2 2078.0037 P62942;Q5W0X3;A0A087WZM5 P62942 19 36 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A;Peptidyl-prolyl cis-trans isomerase yes no 4 1.3099E-08 94.856 By MS/MS By MS/MS By MS/MS 1 1 1 1.1061 1.1984 14.22 3 Median 1.1061 1.1984 NaN 1 0 Median 1.3956 1.2649 NaN 1 0 Median 0.85661 0.96674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28613000 11622000 16992000 2128300 921870 1206400 22404000 9139400 13265000 4080900 1560500 2520400 0 0 0 0 0 0 0 0 0 28372 2612 29848 148850;148851;148852 149798;149799;149800;149801;149802 149802 5 RGSIGENQIKDEK KEDKEKEEEEEEKPKRGSIGENQIKDEKIK PKRGSIGENQIKDEKIKKDKEPKEEVKSFM K R G E K I 0 1 1 1 0 1 2 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 13 2 1472.7583 E9PGZ1;C9J813 E9PGZ1 194 206 CALD1 yes no 3 0.0024195 37.613 By matching By matching By MS/MS By matching 2 2 1 1 0.87206 0.95808 27.074 6 Median 0.79494 0.86803 42.385 2 0 Median 0.73452 0.73701 29.113 2 0 Median 0.8889 1.0137 NaN 1 0 Median 0.9497 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6555400 3483600 3071800 775970 378270 397700 1464000 828480 635540 3979500 2113600 1866000 335890 163310 172580 0 0 0 0 0 0 28373 928 29849 148853;148854;148855;148856;148857;148858 149803;149804 149804 2 RGSPLLIGVR VFKSVHFPGQAVGTRRGSPLLIGVRSEHKL AVGTRRGSPLLIGVRSEHKLSTDHIPILYR R R G V R S 0 2 0 0 0 0 0 2 0 1 2 0 0 0 1 1 0 0 0 1 0 0 10 1 1066.6611 Q06210;O94808;E5RJP4 Q06210 203 212 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 2 0.00048018 85.731 By MS/MS By matching 1 1 1.1839 1.1924 23.014 2 Median 1.3685 1.4031 NaN 1 0 Median 1.0242 1.0133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10325000 4658400 5666800 8882300 3980400 4901900 1442900 678000 764890 0 0 0 0 0 0 0 0 0 0 0 0 28374 2723 29850 148859;148860 149805;149806 149805 2 RGTEHSGSTVPSILNR WCPVTDLDSIQFALRRGTEHSGSTVPSILN GTEHSGSTVPSILNRMQTNQTPPTYNKTNK R R G N R M 0 2 1 0 0 0 1 2 1 1 1 0 0 0 1 3 2 0 0 1 0 0 16 1 1709.8809 Q93050;B7Z641;B7Z2A9 Q93050 339 354 ATP6V0A1 V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase subunit a yes no 3;4 2.201E-05 73.296 By MS/MS By MS/MS By matching 1 2 1 1.0978 0.94381 8.3567 4 Linear 0.85941 0.93393 NaN 1 0 Median 1.095 1.0263 11.228 2 0 Median 0.85503 0.93968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17130000 8201600 8928800 2643000 1226600 1416500 13616000 6576400 7039300 871720 398650 473060 0 0 0 0 0 0 0 0 0 28375 3576 29851 148861;148862;148863;148864 149807;149808;149809;149810;149811 149809 5 RGTGGVDTAATGGVFDISNLDR DSRFPKILENLRLQKRGTGGVDTAATGGVF TAATGGVFDISNLDRLGKSEVELVQLVIDG K R G D R L 2 2 1 3 0 0 0 5 0 1 1 0 0 1 0 1 3 0 0 2 0 0 22 1 2178.0665 P12532 P12532 353 374 CKMT1A Creatine kinase U-type, mitochondrial yes yes 3 2.7096E-12 64.295 By MS/MS 1 0.70241 0.71993 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70241 0.71993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6458400 3710100 2748200 0 0 0 0 0 0 6458400 3710100 2748200 0 0 0 0 0 0 0 0 0 28376 1982 29852 148865 149812;149813 149812 2 RGTGGVDTAAVGGVFDVSNADR HEKFSEVLKRLRLQKRGTGGVDTAAVGGVF TAAVGGVFDVSNADRLGFSEVELVQMVVDG K R G D R L 3 2 1 3 0 0 0 5 0 0 0 0 0 1 0 1 2 0 0 4 0 0 22 1 2120.0247 P12277;H0YJG0 P12277 320 341 CKB Creatine kinase B-type yes no 2;3 1.9131E-26 126.97 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 0.87837 0.9242 10.531 9 Median 0.85208 0.89654 12.384 3 0 Median 1.0172 0.9499 11.035 3 0 Median 0.85382 0.87511 8.2995 2 0 Median 1.1574 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96955000 50046000 46910000 69716000 36492000 33223000 6860300 3009800 3850600 19872000 10316000 9556800 506800 227920 278880 0 0 0 0 0 0 28377 1980 29853 148866;148867;148868;148869;148870;148871;148872;148873;148874 149814;149815;149816;149817;149818;149819;149820 149815 7 RGTSLMEDDEEPIVEDVMMSSEGR PMQTEHHQTPLDYNRRGTSLMEDDEEPIVE EEPIVEDVMMSSEGRIEDLNEGMDFDTMDI R R G G R I 0 2 0 3 0 0 5 2 0 1 1 0 3 0 1 3 1 0 0 2 0 0 24 1 2711.1724 Q8N3U4 Q8N3U4 1158 1181 STAG2 Cohesin subunit SA-2 yes yes 3 1.4267E-08 48.867 By MS/MS 1 0.71601 0.87082 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71601 0.87082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1405300 821920 583340 0 0 0 0 0 0 1405300 821920 583340 0 0 0 0 0 0 0 0 0 28378 3369 29854 148875 149821 149821 1 RGVFNVQMEPK LSQAMAVIKEKIEEKRGVFNVQMEPKVVTD IEEKRGVFNVQMEPKVVTDTDETELARQME K R G P K V 0 1 1 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 2 0 0 11 1 1303.6707 P05198 P05198 266 276 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2;3 0.0012202 76.064 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 5 0.9651 0.87875 29.585 11 Median 0.87706 0.87875 51.715 3 3 Median 0.80331 0.71836 7.3482 2 2 Median 1.0525 1.1428 4.3915 2 2 Median 0.99083 0.86354 11.998 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121540000 70644000 50894000 60085000 37808000 22276000 18688000 11905000 6783100 20611000 10102000 10510000 22154000 10829000 11325000 0 0 0 0 0 0 28379 1862 29855;29856 148876;148877;148878;148879;148880;148881;148882;148883;148884;148885;148886;148887;148888 149822;149823;149824;149825;149826;149827;149828;149829;149830;149831;149832;149833;149834;149835;149836;149837 149834 618 16 RGVMLAVDAVIAELKK GFEKISKGANPVEIRRGVMLAVDAVIAELK GVMLAVDAVIAELKKQSKPVTTPEEIAQVA R R G K K Q 3 1 0 1 0 0 1 1 0 1 2 2 1 0 0 0 0 0 0 3 0 0 16 2 1712.0019 P10809;E7ESH4;E7EXB4 P10809 142 157 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2;3 0.0012017 35.329 By MS/MS By MS/MS By matching 1 6 1 1.3423 1.3089 14.351 8 Median 1.2154 1.3157 NaN 1 0 Median 1.3475 1.3409 14.307 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2255 1.1416 NaN 1 0 Median 104290000 43061000 61233000 23033000 10344000 12689000 76108000 30455000 45653000 0 0 0 0 0 0 0 0 0 5153100 2262400 2890700 28380 1947 29857 148889;148890;148891;148892;148893;148894;148895;148896 149838;149839;149840;149841 149839 4 RGVVGPELYGR DPHSPESLSVDEAVRRGVVGPELYGRLKRA EAVRRGVVGPELYGRLKRAEGAIAGFRDPF R R G G R L 0 2 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 0 1 2 0 0 11 1 1201.6568 P58107;A0A075B730 P58107 990 1000 EPPK1 Epiplakin yes no 2 0.00019107 118.4 By MS/MS 1 0.8353 0.90772 NaN 1 Median 0.8353 0.90772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7371200 3898900 3472200 7371200 3898900 3472200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28381 2520 29858 148897 149842 149842 1 RGWDENVYYTVPLVR DLQSREETRNAAWRKRGWDENVYYTVPLVR RGWDENVYYTVPLVRHMESRIMIPLKISPL K R G V R H 0 2 1 1 0 0 1 1 0 0 1 0 0 0 1 0 1 1 2 3 0 0 15 1 1865.9424 Q9BPW8 Q9BPW8 254 268 NIPSNAP1 Protein NipSnap homolog 1 yes yes 2;3 1.6646E-07 141.58 By MS/MS By matching 2 2 1.102 1.05 36.659 4 Median 0.77226 0.82549 8.0983 2 0 Median 1.7471 1.4837 22.982 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15287000 7548400 7738800 14586000 7325700 7260200 701350 222720 478630 0 0 0 0 0 0 0 0 0 0 0 0 28382 3777 29859 148898;148899;148900;148901 149843;149844;149845 149845 3 RGYFDEEMNR DPVHSHRVPVDVAYRRGYFDEEMNRVLADP DVAYRRGYFDEEMNRVLADPSDDTKGFFDP R R G N R V 0 2 1 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 10 1 1315.5615 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2969 2978 EPPK1;PLEC Epiplakin;Plectin no no 2;3 9.1906E-05 128.81 By MS/MS By MS/MS 2 1 1.3309 1.4463 23.619 3 Median 1.3996 1.5209 7.1159 2 0 Median 1.0881 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24035000 9915700 14119000 12326000 4528400 7797600 11709000 5387300 6321800 0 0 0 0 0 0 0 0 0 0 0 0 28383 2933;2520 29860 148902;148903;148904 149846;149847;149848;149849 149849 4 RHAEQERDELADEITNSASGK ILQLQEELASSERARRHAEQERDELADEIT RDELADEITNSASGKSALLDEKRRLEARIA R R H G K S 3 2 1 2 0 1 4 1 1 1 1 1 0 0 0 2 1 0 0 0 0 0 21 2 2355.1051 P35580 P35580 1704 1724 MYH10 Myosin-10 yes yes 3;4 4.4556E-14 88.396 By MS/MS By MS/MS By matching 2 2 1 1.1365 1.2094 17.662 5 Median 1.0625 1.0841 15.469 2 0 Median 1.183 1.3422 5.6738 2 0 Median 0.77786 0.93475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38961000 20016000 18945000 17179000 8678500 8500700 10115000 4693300 5421500 11667000 6644100 5022800 0 0 0 0 0 0 0 0 0 28384 2245 29861 148905;148906;148907;148908;148909 149850;149851;149852;149853 149852 4 RHEAAVPPLAIPSARPEK NVPSNKSNFSRGDERRHEAAVPPLAIPSAR AAVPPLAIPSARPEKRDSRVSTSSQESKTT R R H E K R 4 2 0 0 0 0 2 0 1 1 1 1 0 0 4 1 0 0 0 1 0 0 18 2 1938.0799 Q6PJT7;H0YJA2;G3V256;G3V3Y4;A0A3B3IT62;G3V240;G3V572;G3V3R9 Q6PJT7 109 126 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 4 0.00041544 36.111 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.37705 0.41266 28.687 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35878 0.41221 8.3123 2 0 Median 0.38264 0.38954 NaN 1 0 Median 0.60726 0.71038 NaN 1 1 Median NaN NaN NaN 0 0 Median 18378000 10071000 8307300 0 0 0 0 0 0 6498500 4475500 2023000 1422800 1068700 354150 9804600 4072900 5731700 652360 453920 198440 28385 3175 29862 148910;148911;148912;148913;148914 149854;149855 149854 2 RHEILQWVLQTDSQQ TSVNTIYDNAVQGLRRHEILQWVLQTDSQQ RHEILQWVLQTDSQQ_______________ R R H Q Q - 0 1 0 1 0 4 1 0 1 1 2 0 0 0 0 1 1 1 0 1 0 0 15 1 1879.9541 Q96AG4 Q96AG4 293 307 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 0.00069243 45.879 By MS/MS By MS/MS By matching By matching By matching 2 2 3 1 2 1.4154 1.1778 40.104 10 Median NaN NaN NaN 0 0 Median 1.2124 1.014 3.9281 2 0 Median 1.5378 1.5029 1.8676 2 0 Median 1.3938 1.1696 62.36 3 0 Median 2.0733 2.227 NaN 1 0 Median 1.3308 1.07 14.558 2 0 Median 40488000 17205000 23282000 0 0 0 17470000 7920900 9548700 14930000 5998000 8932300 1917500 711690 1205900 1825100 760000 1065100 4345400 1815000 2530400 28386 3600 29863 148915;148916;148917;148918;148919;148920;148921;148922;148923;148924 149856;149857;149858;149859 149857 4 RHEMPPHIYAISESAYR PIYSENIIEMYRGKKRHEMPPHIYAISESA EMPPHIYAISESAYRCMLQDREDQSILCTG K R H Y R C 2 2 0 0 0 0 2 0 2 2 0 0 1 0 2 2 0 0 2 0 0 0 17 1 2055.9949 P35580;E7ERA5 P35580 147 163 MYH10 Myosin-10 yes no 4 9.5489E-06 62.765 By MS/MS 1 2.9805 3.0098 NaN 1 Median NaN NaN NaN 0 0 Median 2.9805 3.0098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5978400 1241600 4736700 0 0 0 5978400 1241600 4736700 0 0 0 0 0 0 0 0 0 0 0 0 28387 2245 29864 148925 149860 149860 1 RHEMPPHIYAITDTAYR PIYSEEIVEMYKGKKRHEMPPHIYAITDTA EMPPHIYAITDTAYRSMMQDREDQSILCTG K R H Y R S 2 2 0 1 0 0 1 0 2 2 0 0 1 0 2 0 2 0 2 0 0 0 17 1 2070.0105 P35579;Q5BKV1 P35579 143 159 MYH9 Myosin-9 yes no 3;4 7.6576E-11 98.507 By MS/MS By MS/MS By matching 3 2 2 0.8432 0.92032 16.897 7 Median 1.0593 1.1328 27.863 3 0 Plateau 0.85149 0.85987 1.385 2 0 Median 0.76099 0.96131 5.7642 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64976000 34707000 30268000 40283000 21020000 19264000 15962000 8786900 7175200 8730200 4900600 3829600 0 0 0 0 0 0 0 0 0 28388 2244 29865;29866 148926;148927;148928;148929;148930;148931;148932 149861;149862;149863;149864;149865;149866;149867 149861 987 7 RHEQFIPIAADK RQSEVPKPEDGEPPRRHEQFIPIAADKRPP PPRRHEQFIPIAADKRPPKFERKFDPARER R R H D K R 2 1 0 1 0 1 1 0 1 2 0 1 0 1 1 0 0 0 0 0 0 0 12 1 1423.7572 E7EPN9;Q9Y520 E7EPN9 1395 1406 PRRC2C Protein PRRC2C yes no 3 0.00052421 49.31 By MS/MS By MS/MS 2 3 0.78115 0.74232 51.521 5 Median 0.51394 0.53826 71.361 2 1 Median 0.78115 0.74232 47.821 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13604000 8268300 5335300 3109700 1994500 1115200 10494000 6273800 4220100 0 0 0 0 0 0 0 0 0 0 0 0 28389 872 29867 148933;148934;148935;148936;148937 149868;149869;149870 149870 3 RHIEIFTDLSSR MDVIQHETIGKKFEKRHIEIFTDLSSRFSK FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK K R H S R F 0 2 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 12 1 1472.7736 P13010;C9JZ81 P13010 130 141 XRCC5 X-ray repair cross-complementing protein 5 yes no 3 3.5347E-05 88.101 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0339 1.1323 18.683 5 Median 1.1044 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91491 1.0389 19.754 2 0 Median 1.4226 1.2605 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91973 0.81972 NaN 1 0 Median 38233000 18580000 19653000 10117000 4913300 5204100 0 0 0 19069000 9544500 9525000 5736000 2404900 3331100 0 0 0 3310300 1717400 1592800 28390 1986 29868 148938;148939;148940;148941;148942 149871;149872;149873;149874 149872 4 RHIPEAHQATLLDGK GFTVDTPAKASITSKRHIPEAHQATLLDGK RHIPEAHQATLLDGKQGKVIMPLGSKLTGV K R H G K Q 2 1 0 1 0 1 1 1 2 1 2 1 0 0 1 0 1 0 0 0 0 0 15 1 1684.9009 Q8NFC6 Q8NFC6 1364 1378 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 4 0.011365 23.481 By MS/MS 1 0.54272 0.62674 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54272 0.62674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1513500 824260 689210 0 0 0 0 0 0 1513500 824260 689210 0 0 0 0 0 0 0 0 0 28391 3434 29869 148943 149875;149876 149876 2 RHLIEMGYLQGGK WDGELYENGSFYFAKRHLIEMGYLQGGKMA AKRHLIEMGYLQGGKMAYYEMRAEHSVDID K R H G K M 0 1 0 0 0 1 1 3 1 1 2 1 1 0 0 0 0 0 1 0 0 0 13 1 1500.7871 Q8NFW8;F5GYM0 Q8NFW8 222 234 CMAS N-acylneuraminate cytidylyltransferase yes no 3 7.7484E-07 97.86 By MS/MS By MS/MS 1 1 1.1468 1.1287 21.975 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95343 0.96626 NaN 1 0 Median 1.3795 1.3185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21134000 9835800 11299000 0 0 0 0 0 0 8122900 4246300 3876600 13011000 5589500 7421900 0 0 0 0 0 0 28392 3441 29870 148944;148945 149877;149878;149879 149878 3 RHLTGEFEKK VLVGDGGTGKTTFVKRHLTGEFEKKYVATL TTFVKRHLTGEFEKKYVATLGVEVHPLVFH K R H K K Y 0 1 0 0 0 0 2 1 1 0 1 2 0 1 0 0 1 0 0 0 0 0 10 2 1243.6673 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 29 38 RAN GTP-binding nuclear protein Ran yes no 3 0.060494 16.254 By matching By MS/MS By matching By matching 1 1 1 1 1.075 1.0004 18.519 4 Median NaN NaN NaN 0 0 Median 1.0343 0.8968 NaN 1 0 Median 0.96996 1.086 NaN 1 0 Median 1.1173 0.92161 NaN 1 0 Median 1.136 1.3411 NaN 1 0 Median NaN NaN NaN 0 0 Median 1548800 743130 805670 0 0 0 275660 134460 141200 855710 425600 430110 256270 109230 147050 161160 73834 87323 0 0 0 28393 623 29871 148946;148947;148948;148949 149880 149880 1 RHPEHYVDYTYMATK YSHTEPNGLLLHYQRRHPEHYVDYTYMATK RHPEHYVDYTYMATKLWAGPDPSPPSLTMP R R H T K L 1 1 0 1 0 0 1 0 2 0 0 1 1 0 1 0 2 0 3 1 0 0 15 1 1909.8781 Q96JM2;H3BLX4 Q96JM2 1334 1348 ZNF462 Zinc finger protein 462 yes no 4 0.068995 9.8113 By MS/MS 1 1.7172 2.0463 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7172 2.0463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2548200 854620 1693600 0 0 0 0 0 0 2548200 854620 1693600 0 0 0 0 0 0 0 0 0 28394 3686 29872 148950 149881 149881 0 RHPEYAVSVLLR AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK YSRRHPEYAVSVLLRLAKEYEATLEECCAK R R H L R L 1 2 0 0 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 12 1 1438.8045 CON__P02769 CON__P02769 360 371 yes yes 2;3 2.2296E-10 132.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 4 4 4 4 1 0.043912 0.047712 133.65 19 Median 0.043944 0.046168 208.45 6 6 Median 0.026818 0.026533 148.15 3 3 Median 0.034763 0.035629 26.879 3 3 Median 0.088278 0.078223 129.84 3 3 Median 0.043912 0.047712 37.063 3 3 Median 0.10834 0.095783 NaN 1 1 Median 2031100000 2015400000 15664000 1619800000 1608500000 11270000 283890000 282080000 1815400 71066000 70508000 558080 11140000 10887000 253320 35998000 34737000 1260600 9182000 8675200 506860 + 28395 746 29873 148951;148952;148953;148954;148955;148956;148957;148958;148959;148960;148961;148962;148963;148964;148965;148966;148967;148968;148969;148970;148971;148972;148973;148974;148975;148976;148977 149882;149883;149884;149885;149886;149887;149888;149889;149890;149891;149892;149893;149894;149895;149896;149897;149898;149899;149900;149901;149902;149903;149904;149905;149906;149907;149908;149909;149910;149911;149912;149913;149914;149915;149916;149917 149886 36 RHPSTLPVISDAR PPSPPSQVIPASEPKRHPSTLPVISDARSV PKRHPSTLPVISDARSVLLEAIRKGIQLRK K R H A R S 1 2 0 1 0 0 0 0 1 1 1 0 0 0 2 2 1 0 0 1 0 0 13 1 1447.7896 Q92558 Q92558 486 498 WASF1 Wiskott-Aldrich syndrome protein family member 1 yes yes 3 0.0023568 38.799 By MS/MS By MS/MS 1 1 0.77811 0.79343 4.028 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73156 0.81636 NaN 1 1 Median 0.82763 0.77115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3825600 2059100 1766500 0 0 0 0 0 0 2611000 1419400 1191500 1214600 639680 574950 0 0 0 0 0 0 28396 3536 29874 148978;148979 149918;149919 149919 2 RHPYFYAPELLYYANK DEKKFWGKYLYEIARRHPYFYAPELLYYAN HPYFYAPELLYYANKYNGVFQECCQAEDKG R R H N K Y 2 1 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 0 4 0 0 0 16 1 2044.0207 CON__P02769 CON__P02769 168 183 yes yes 2;3;4 1.1463E-08 94.532 By MS/MS By MS/MS By MS/MS 8 1 3 0.066386 0.070289 148.12 9 Median 0.12322 0.132 164.77 7 7 Median 0.027645 0.025123 NaN 1 1 Median 0.066214 0.070289 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 271510000 262400000 9113100 237380000 228870000 8505200 21188000 20890000 297740 12947000 12637000 310160 0 0 0 0 0 0 0 0 0 + 28397 746 29875 148980;148981;148982;148983;148984;148985;148986;148987;148988;148989;148990;148991 149920;149921;149922;149923;149924;149925;149926;149927;149928;149929;149930;149931;149932;149933;149934 149922 15 RHVFGESDELIGQK KDCGATWVVLGHSERRHVFGESDELIGQKV RRHVFGESDELIGQKVAHALAEGLGVIACI R R H Q K V 0 1 0 1 0 1 2 2 1 1 1 1 0 1 0 1 0 0 0 1 0 0 14 1 1613.8162 P60174;U3KPZ0;U3KQF3;U3KPS5 P60174 137 150 TPI1 Triosephosphate isomerase yes no 2;3;4 2.3715E-16 182.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 1 2 1 1.0321 1.0247 15.491 10 Median 1.0282 1.0682 9.848 4 1 Linear 1.1034 0.99861 9.4745 3 0 Median 1.0069 1.0516 NaN 1 0 Median 1.2298 1.0887 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.5693 1.5106 NaN 1 0 Median 610730000 297910000 312820000 332090000 170190000 161900000 263010000 120440000 142570000 10506000 4617400 5888400 4226500 2262600 1963900 0 0 0 897570 397750 499820 28398 2523 29876 148992;148993;148994;148995;148996;148997;148998;148999;149000;149001;149002;149003 149935;149936;149937;149938;149939;149940;149941;149942;149943;149944;149945;149946;149947;149948;149949;149950;149951 149951 17 RHWGGNVLGPK EAIRTNYNDRYDEIRRHWGGNVLGPKSVAR DEIRRHWGGNVLGPKSVARIAKLEKAKAKE R R H P K S 0 1 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 1 0 1 0 0 11 1 1219.6574 P62424;Q5T8U2 P62424 235 245 RPL7A 60S ribosomal protein L7a yes no 3 3.9548E-05 113.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1 1.0409 1.0104 6.4827 8 Median 0.96591 0.97601 2.6831 2 1 Median 1.1063 0.98354 NaN 1 0 Median 0.93359 1.0222 NaN 1 0 Median 1.1063 1.044 NaN 1 0 Median 1.0202 1.0931 11.604 2 0 Median 1.1302 1.0138 NaN 1 0 Median 52807000 25658000 27149000 14973000 7255900 7716800 12093000 5789300 6304100 2205400 1167300 1038100 4398800 2030400 2368400 16277000 8130200 8146300 2859800 1284600 1575200 28399 2589 29877 149004;149005;149006;149007;149008;149009;149010;149011 149952;149953;149954;149955;149956;149957;149958;149959;149960;149961;149962;149963;149964 149961 13 RHYLFDVQR NAIDTEKSQQALVQKRHYLFDVQRNNIAMA QALVQKRHYLFDVQRNNIAMALEVTYRERL K R H Q R N 0 2 0 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 9 1 1232.6414 Q5QNZ2;P24539 Q5QNZ2 102 110 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3 0.00067588 82.749 By MS/MS 1 0.44714 0.37974 NaN 1 Median NaN NaN NaN 0 0 Median 0.44714 0.37974 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8909300 7117300 1792000 0 0 0 8909300 7117300 1792000 0 0 0 0 0 0 0 0 0 0 0 0 28400 2124 29878 149012 149965 149965 1 RIAAYLFK SLAQRLEKHELIEFRRIAAYLFKGNNRWKQ HELIEFRRIAAYLFKGNNRWKQSVELCKKD R R I F K G 2 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 1 980.58074 A0A087WVQ6;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 1513 1520 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.027802 47.067 By MS/MS By MS/MS By matching 1 1 1 1.2091 1.214 20.32 3 Plateau 1.2091 1.214 NaN 1 0 Median 1.2475 1.183 NaN 1 0 Median 0.70576 0.84346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19570000 9197900 10372000 12485000 5710500 6774800 3618800 1602000 2016800 3465500 1885400 1580100 0 0 0 0 0 0 0 0 0 28401 44 29879 149013;149014;149015 149966;149967 149967 2 RIADEDRGNWR DRPSWRNTDDDRPPRRIADEDRGNWRHADD RPPRRIADEDRGNWRHADDDRPPRRGLDED R R I W R H 1 3 1 2 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 11 2 1386.6753 Q14152 Q14152 1000 1010 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3 0.047688 18.625 By MS/MS 1 0.97615 1.088 NaN 1 Median 0.97615 1.088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1444000 677140 766820 1444000 677140 766820 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28402 2860 29880 149016 149968 149968 1 RIAFSSTSLLK EEEELFRQGELNKGRRIAFSSTSLLKMAPS NKGRRIAFSSTSLLKMAPSAEERTTIHEMF R R I L K M 1 1 0 0 0 0 0 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 11 1 1221.7081 Q9Y305;H7C5Q2 Q9Y305 240 250 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 2.1781E-05 123.88 By MS/MS By MS/MS 1 1 0.37865 0.36889 102.32 2 Median 0.76352 0.7605 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18778 0.17893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49175000 36327000 12847000 15838000 8878100 6959700 0 0 0 0 0 0 33337000 27449000 5887700 0 0 0 0 0 0 28403 4400 29881 149017;149018 149969;149970 149969 2 RIALTDNALIAR NELIYKRGYGKINKKRIALTDNALIARSLG NKKRIALTDNALIARSLGKYGIICMEDLIH K R I A R S 3 2 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1325.7779 P18124;A8MUD9 P18124 166 177 RPL7 60S ribosomal protein L7 yes no 2;3 1.6087E-06 151.98 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.0571 1.0925 15.112 7 Median 1.0546 1.1354 5.4393 2 1 Median 1.1397 1.049 10.636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1272 1.2225 21.545 2 1 Median 1.0052 0.88408 NaN 1 0 Median 91205000 41628000 49577000 54211000 24584000 29627000 16846000 7526600 9319600 0 0 0 0 0 0 19315000 9226500 10088000 833070 291620 541450 28404 2056 29882 149019;149020;149021;149022;149023;149024;149025;149026 149971;149972;149973;149974;149975;149976;149977;149978;149979 149973 9 RIDEINKELNQVMEQLGDAR KLEGELTEEVEMAKRRIDEINKELNQVMEQ NKELNQVMEQLGDARIDRQESSRQQRKAEI R R I A R I 1 2 2 2 0 2 3 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 20 2 2370.1962 Q14683;G8JLG1 Q14683 469 488 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 9.4539E-09 73.783 By MS/MS By matching 1 1 0.79071 0.90804 3.1427 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78777 0.88808 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79366 0.92844 NaN 1 0 Median NaN NaN NaN 0 0 Median 7118000 3463200 3654800 0 0 0 0 0 0 6517900 3204300 3313500 0 0 0 600130 258890 341240 0 0 0 28405 2889 29883 149027;149028 149980;149981 149981 2 RIDITLSSVK CVPMVRDLLRYFYSRRIDITLSSVKCFHKL YFYSRRIDITLSSVKCFHKLASAYGARQLQ R R I V K C 0 1 0 1 0 0 0 0 0 2 1 1 0 0 0 2 1 0 0 1 0 0 10 1 1130.6659 Q08380;K7EP36 Q08380 216 225 LGALS3BP Galectin-3-binding protein yes no 2 0.00051322 82.749 By MS/MS By MS/MS 3 2 1.2521 1.2564 48.001 5 Median 1.0928 1.1189 12.465 3 0 Median 2.3485 2.2418 54.905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25833000 9208200 16625000 14817000 6365200 8451700 11016000 2843000 8172800 0 0 0 0 0 0 0 0 0 0 0 0 28406 2739 29884 149029;149030;149031;149032;149033 149982;149983 149983 2 RIDSVYLDPLVFR FCLLRGKQGGFENKKRIDSVYLDPLVFREF KKRIDSVYLDPLVFREFAFIDMPDAAHGIS K R I F R E 0 2 0 2 0 0 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 13 1 1591.8722 H7C147;C9JSR4;O60443;H7BZJ0 H7C147 74 86 DFNA5 Non-syndromic hearing impairment protein 5 yes no 3 0.066717 19.058 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3205900 0 3205900 3205900 0 3205900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28407 722 29885 149034 149984 149984 1 RIDTNLNK CAMNINGGNTLACTRRIDTNLNKVSKIYPL NTLACTRRIDTNLNKVSKIYPLPHMYVIKD R R I N K V 0 1 2 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 1 972.53524 P21912;A0A087WWT1;A0A087WXX8 P21912 116 123 SDHB Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial yes no 2 0.036266 42.599 By MS/MS By matching 1 1 1.0954 1.0926 2.959 2 Median 1.06 1.1157 NaN 1 0 Median 1.132 1.07 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1886500 891810 994660 1418300 663680 754650 468150 228130 240020 0 0 0 0 0 0 0 0 0 0 0 0 28408 2093 29886 149035;149036 149985 149985 1 RIDTPSLEEPSDLEELEQFAK ATPIQTLPQSQSTPKRIDTPSLEEPSDLEE LEEPSDLEELEQFAKTFKQRRIKLGFTQGD K R I A K T 1 1 0 2 0 1 5 0 0 1 3 1 0 1 2 2 1 0 0 0 0 0 21 1 2445.1911 P14859;A0A0C4DG88 P14859 273 293 POU2F1 POU domain, class 2, transcription factor 1;POU domain protein yes no 3 6.2651E-12 66.644 By MS/MS By matching 1 1 0.74657 0.78427 2.8395 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70532 0.80017 NaN 1 0 Median 0.79024 0.76868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7304100 4233800 3070300 0 0 0 0 0 0 7101900 4129300 2972600 202140 104480 97661 0 0 0 0 0 0 28409 2010 29887 149037;149038 149986;149987 149986 2 RIEDNLPAGEE LKGDGVTEIRMRFIRRIEDNLPAGEE____ RFIRRIEDNLPAGEE_______________ R R I E E - 1 1 1 1 0 0 3 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 11 1 1241.5888 O43617;A0A087WWM0;A0A087WYS5 O43617 170 180 TRAPPC3 Trafficking protein particle complex subunit 3 yes no 2 0.00019255 95.642 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.84969 0.96275 20.056 4 Linear 0.93391 0.90183 NaN 1 0 Median 0.9503 0.78806 NaN 1 0 Median 0.77306 0.78251 NaN 1 0 Median 0.68033 0.56279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25797000 13697000 12100000 15509000 8477100 7031700 6317900 3073200 3244700 2353700 1143300 1210400 1616600 1003700 612840 0 0 0 0 0 0 28410 1578 29888 149039;149040;149041;149042 149988;149989;149990 149989 3 RIEELEAELR SEINREKEKNTQLKRRIEELEAELREKETE TQLKRRIEELEAELREKETELKDLRKQSEI R R I L R E 1 2 0 0 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1256.6725 Q9NSB8;H0YNR9 Q9NSB8 252 261 HOMER2 Homer protein homolog 2 yes no 2;3 0.0010218 104.22 By MS/MS 2 1.2311 1.2618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2311 1.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18399000 8125500 10273000 0 0 0 0 0 0 18399000 8125500 10273000 0 0 0 0 0 0 0 0 0 28411 4100 29889 149043;149044 149991;149992 149991 2 RIEELNK YVYFENSSSNPYLVRRIEELNKTANGNVEA SSNPYLVRRIEELNKTANGNVEAKVVCLFR R R I N K T 0 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 1 900.50288 O94776;E7ESY4;Q13330;H7C3F3;H0YIT0;E7EQY4;E7EV10;Q9BTC8;E9PCS8;E9PF88 O94776 26 32 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 2 0.015442 81.297 By matching By matching By MS/MS By matching By matching 2 1 2 1 1 0.97641 1.0264 15.464 7 Median 0.92454 0.89116 4.7172 2 0 Median 1.2155 1.1397 NaN 1 0 Median 1.077 1.1902 19.456 2 0 Median 0.97257 0.93466 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1533 1.0264 NaN 1 0 Median 3742700 1863700 1879000 951340 499810 451530 311690 134060 177630 2078800 1057500 1021300 280830 123320 157510 0 0 0 120030 48956 71076 28412 1723;888;881 29890 149045;149046;149047;149048;149049;149050;149051 149993 149993 1 RIEEMEDELQKTER EKAVSAAEEVKTYKRRIEEMEDELQKTERS RRIEEMEDELQKTERSFKNQIATHEKKAHE R R I E R S 0 2 0 1 0 1 5 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 14 2 1804.8625 Q5JRA6 Q5JRA6 1572 1585 MIA3 Melanoma inhibitory activity protein 3 yes yes 3 5.293E-05 79.81 By MS/MS 1 0.95382 0.97319 NaN 1 Median 0.95382 0.97319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8042200 4124200 3918000 8042200 4124200 3918000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28413 3049 29891 149052 149994;149995 149995 2 RIEFAEQINK IEESQRKMNALFEGRRIEFAEQINKMEARP LFEGRRIEFAEQINKMEARPRRQSMKEKEH R R I N K M 1 1 1 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 10 1 1246.667 Q9H307 Q9H307 271 280 PNN Pinin yes yes 2;3 9.1202E-05 116.05 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 4 5 1.0455 1.0565 24.968 12 Median NaN NaN NaN 0 0 Median 1.2015 1.1315 NaN 1 0 Median 1.1699 1.3296 NaN 1 0 Median 0.8269 0.79181 NaN 1 0 Median 1.2661 1.4536 31.756 4 0 Linear 1.2021 1.0259 22.89 5 1 Median 187710000 91478000 96233000 0 0 0 3523000 2130300 1392700 2802700 1471500 1331200 816980 302030 514950 133800000 65889000 67909000 46771000 21685000 25086000 28414 3950 29892 149053;149054;149055;149056;149057;149058;149059;149060;149061;149062;149063;149064;149065 149996;149997;149998;149999;150000;150001;150002;150003;150004;150005;150006;150007;150008 149999 13 RIEGLIER QLKARFLPSPVVIKKRIEGLIEREYLARTP SPVVIKKRIEGLIEREYLARTPEDRKVYTY K R I E R E 0 2 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 1 984.57163 Q13618;A0A087WTG3;H7C399 Q13618 744 751 CUL3 Cullin-3 yes no 2 0.0097702 69.423 By MS/MS By MS/MS By MS/MS 1 1 1 1.0863 1.2552 18.909 3 Median NaN NaN NaN 0 0 Median 0.93462 0.92469 NaN 1 1 Median 1.0863 1.2552 NaN 1 0 Median 1.4746 1.3066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9147500 4466800 4680700 0 0 0 4372100 2203900 2168200 2994900 1468800 1526100 1780600 794180 986380 0 0 0 0 0 0 28415 2831 29893 149066;149067;149068 150009;150010;150011 150011 3 RIEGSGDQVDTLELSGGAR ALLQMVQQFGVDFEKRIEGSGDQVDTLELS SGDQVDTLELSGGARINRIFHERFPFELVK K R I A R I 1 2 0 2 0 1 2 4 0 1 2 0 0 0 0 2 1 0 0 1 0 0 19 1 1958.9657 P50570 P50570 343 361 DNM2 Dynamin-2 no no 2;3 4.3981E-25 140.35 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 2 0.99429 1.1051 31.671 9 Median 0.90599 1.0066 13.152 2 2 Median 0.52633 0.52073 NaN 1 0 Median 1.0232 1.1823 4.5309 2 0 Median 1.1486 1.1245 NaN 1 0 Median 1.5247 1.6566 NaN 1 1 Median 1.0674 0.96495 19.183 2 0 Median 67119000 30823000 36295000 14234000 6524300 7709600 1694900 1138500 556320 36523000 17726000 18797000 6515900 2602000 3913900 4403600 1125600 3278000 3747300 1706600 2040700 28416 2417 29894 149069;149070;149071;149072;149073;149074;149075;149076;149077 150012;150013;150014;150015;150016;150017;150018;150019;150020 150012 9 RIEHPTAGNTEAWEDTHAK TGRAALQKRVMALLRRIEHPTAGNTEAWED PTAGNTEAWEDTHAKWEQATKLILNYPKAK R R I A K W 3 1 1 1 0 0 3 1 2 1 0 1 0 0 1 0 3 1 0 0 0 0 19 1 2162.0141 P21359;H0Y465;J3KSB5 P21359 765 783 NF1 Neurofibromin;Neurofibromin truncated yes no 4 0.076472 3.2385 By MS/MS By matching By matching 1 2 1 0.84823 0.90565 26.407 4 Median 0.70585 0.72245 NaN 1 0 Median 1.1577 1.1123 28.612 2 0 Median 0.75934 0.90272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5968200 2967100 3001000 1454700 804730 649990 2973900 1348700 1625200 1539500 813660 725880 0 0 0 0 0 0 0 0 0 28417 1147 29895 149078;149079;149080;149081 150021;150022 150021 2 RIEKLEEYITTSK AKIKQKLREIEENQKRIEKLEEYITTSKQS QKRIEKLEEYITTSKQSLEEQKKLEGELTE K R I S K Q 0 1 0 0 0 0 3 0 0 2 1 2 0 0 0 1 2 0 1 0 0 0 13 2 1608.8723 Q14683;G8JLG1 Q14683 434 446 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 2.3695E-07 103.76 By MS/MS By matching 2 1 1.174 1.2066 12.089 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.042 1.2264 17.044 2 0 Median 1.1761 1.2066 NaN 1 0 Median 21849000 10925000 10924000 0 0 0 0 0 0 0 0 0 0 0 0 20797000 10471000 10326000 1052200 454500 597740 28418 2889 29896 149082;149083;149084 150023;150024 150023 2 RIELLEEVKR KDFSRYGRVNYVLARRIELLEEVKRLQKSL YVLARRIELLEEVKRLQKSLGVPGDASYTC R R I K R L 0 2 0 0 0 0 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 2 1283.7561 O60306 O60306 905 914 AQR Intron-binding protein aquarius yes yes 3 0.00012283 115.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 3 2 1.0106 1.0528 12.631 10 Median 0.95054 0.96984 NaN 1 0 Median 1.0176 1.1545 NaN 1 0 Median 0.81861 0.92284 NaN 1 0 Median 1.0983 1.1007 12.687 2 0 Median 0.94161 1.1015 15.752 3 2 Median 1.2278 1.0647 20.19 2 0 Median 41171000 20430000 20740000 8343500 3973000 4370500 2853400 1272500 1580800 14694000 7690300 7003400 2214300 1000800 1213500 11333000 5683100 5650300 1732500 810560 921910 28419 1611 29897 149085;149086;149087;149088;149089;149090;149091;149092;149093;149094 150025;150026;150027;150028;150029;150030;150031;150032;150033;150034;150035 150033 11 RIEPADAHVLQK KFGFEIIETKKNYYKRIEPADAHVLQKNLK YYKRIEPADAHVLQKNLKVPSGQNADVQKT K R I Q K N 2 1 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 12 1 1375.7572 C9J5D1;E7EQ69;Q9GZZ1;A0A087WWJ2;B0AZT5 C9J5D1 101 112 NAA50 N-alpha-acetyltransferase 50 yes no 3 3.9776E-05 86.772 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0548 0.93076 9.2487 5 Median 1.0235 1.0116 NaN 1 0 Median 1.0548 0.93076 NaN 1 0 Median 1.0639 1.1099 NaN 1 0 Median 1.008 0.89228 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1236 0.8993 NaN 1 0 Median 26950000 13205000 13745000 8681600 4114600 4566900 4239000 2214900 2024100 9468800 4469500 4999300 4464900 2363700 2101200 0 0 0 95432 42365 53067 28420 677 29898 149095;149096;149097;149098;149099 150036;150037;150038;150039;150040;150041;150042 150037 7 RIEPAEELNSNDMK EPVVIMKRSLRTSAKRIEPAEELNSNDMKT KRIEPAEELNSNDMKTNKEEHKLQDSVPEN K R I M K T 1 1 2 1 0 0 3 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 14 1 1644.7777 P46013 P46013 3058 3071 MKI67 Antigen KI-67 yes yes 2;3 2.449E-08 117.79 By MS/MS By MS/MS 5 2 0.77885 0.83363 18.778 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77885 0.90345 18.148 5 2 Median 0.75597 0.71686 21.341 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40951000 21481000 19470000 0 0 0 0 0 0 37591000 19785000 17806000 3360300 1696400 1663900 0 0 0 0 0 0 28421 2335 29899 149100;149101;149102;149103;149104;149105;149106 150043;150044;150045;150046;150047;150048;150049;150050 150045 8 RIEQHYFEDR SEKVKNYSNLLAFCRRIEQHYFEDRGKGRL LAFCRRIEQHYFEDRGKGRLS_________ R R I D R G 0 2 0 1 0 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 10 1 1391.6582 C9JNK6;O75431 C9JNK6 192 201 MTX2 Metaxin-2 yes no 3 8.7535E-05 82.008 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 0.99527 1.0497 6.8474 5 Median 0.98863 1.0406 1.2303 2 0 Median 1.3746 1.1674 NaN 1 0 Median 0.93529 0.96974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2216 1.0882 NaN 1 0 Median 14701000 7590800 7109900 7477500 4191000 3286400 3434200 1751000 1683200 550800 341500 209300 0 0 0 0 0 0 3238300 1307300 1931000 28422 712 29900 149107;149108;149109;149110;149111 150051;150052;150053;150054;150055;150056 150052 6 RIESLIDR YNQLKFPVKPADLKKRIESLIDRDYMERDK KPADLKKRIESLIDRDYMERDKENPNQYNY K R I D R D 0 2 0 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 1 1000.5665 Q13620;K4DI93;Q13619;A0A0A0MR50 Q13620 889 896 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 2 0.0071022 78.334 By MS/MS By MS/MS 2 1 1.4209 1.3962 8.8364 3 Plateau NaN NaN NaN 0 0 Median 1.3182 1.2874 12.448 2 1 Median NaN NaN NaN 0 0 Median 1.4727 1.3049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7737000 3269500 4467500 0 0 0 5423200 2249600 3173600 0 0 0 2313800 1019900 1293800 0 0 0 0 0 0 28423 1358;2832 29901 149112;149113;149114 150057;150058;150059 150058 3 RIESLIDRDYMER YNQLKFPVKPADLKKRIESLIDRDYMERDK KKRIESLIDRDYMERDKENPNQYNYIA___ K R I E R D 0 3 0 2 0 0 2 0 0 2 1 0 1 0 0 1 0 0 1 0 0 0 13 2 1694.841 Q13620;K4DI93;Q13619;A0A0A0MR50 Q13620 889 901 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 3 0.00058954 50.155 By matching By MS/MS 1 1 0.99479 1.083 14.53 2 Median 1.0002 0.97729 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9894 1.2002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19888000 10040000 9848100 11378000 6289800 5088000 0 0 0 8510400 3750200 4760100 0 0 0 0 0 0 0 0 0 28424 1358;2832 29902 149115;149116 150060;150061 150061 2 RIESPMHPYSR PCVIFIDELDSVGGKRIESPMHPYSRQTIN VGGKRIESPMHPYSRQTINQLLAEMDGFKP K R I S R Q 0 2 0 0 0 0 1 0 1 1 0 0 1 0 2 2 0 0 1 0 0 0 11 1 1371.6718 Q96I63;Q96TA2 Q96I63 447 457 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 3 0.052994 13.137 By matching By MS/MS By matching 1 1 1 0.66809 0.60676 44.296 3 Median 0.29028 0.31424 NaN 1 0 Median 0.66809 0.60676 NaN 1 0 Median 0.71214 0.7299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051000 1962500 1088500 1343000 935760 407200 1506000 922690 583300 202020 104010 98012 0 0 0 0 0 0 0 0 0 28425 3677 29903 149117;149118;149119 150062 150062 1 RIEVNVELR RFKNKGKDSTEMRRRRIEVNVELRKAKKDD TEMRRRRIEVNVELRKAKKDDQMLKRRNVS R R I L R K 0 2 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 1 1126.6459 P52292;J3QLL0;J3KS65 P52292 31 39 KPNA2 Importin subunit alpha-1 yes no 2 0.00099845 103.55 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 3 1.4249 1.2612 39.193 10 Median 1.4877 1.4658 NaN 1 0 Median 1.2226 1.1064 6.0796 2 0 Median 1.4461 1.5619 NaN 1 0 Median 1.0394 0.95635 28.027 2 0 Median 3.2203 3.4445 NaN 1 0 Median 1.4266 1.2708 19.556 3 0 Median 35579000 14550000 21029000 3976200 1563700 2412500 5794900 2485300 3309500 10398000 4403600 5994000 9441800 4292300 5149500 2649000 613250 2035700 3319500 1191900 2127600 28426 2448 29904 149120;149121;149122;149123;149124;149125;149126;149127;149128;149129 150063;150064;150065;150066;150067 150065 5 RIEVNVELRK RFKNKGKDSTEMRRRRIEVNVELRKAKKDD EMRRRRIEVNVELRKAKKDDQMLKRRNVSS R R I R K A 0 2 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 10 2 1254.7408 P52292;J3QLL0;J3KS65 P52292 31 40 KPNA2 Importin subunit alpha-1 yes no 3 0.00023597 97.813 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1 4 1.2932 1.3749 16.199 11 Median 1.4148 1.4996 11.535 2 1 Median 1.0978 1.2645 1.3658 2 0 Median 1.2932 1.3749 NaN 1 0 Median 1.3324 1.3818 NaN 1 0 Median 1.3005 1.488 NaN 1 0 Median 1.136 1.0804 17.079 4 0 Median 56103000 23325000 32778000 9737300 3895700 5841500 6506800 2946700 3560100 12412000 5128200 7283900 6336000 1965900 4370100 10125000 4514100 5611400 10985000 4874400 6110600 28427 2448 29905 149130;149131;149132;149133;149134;149135;149136;149137;149138;149139;149140;149141;149142 150068;150069;150070;150071;150072;150073;150074;150075;150076;150077;150078;150079;150080;150081;150082;150083;150084 150072 17 RIEYIEAR SRLATLNEKLTALERRIEYIEARVTKGETL KLTALERRIEYIEARVTKGETLT_______ R R I A R V 1 2 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 8 1 1048.5665 Q8WUW1 Q8WUW1 60 67 BRK1 Protein BRICK1 yes yes 2 0.0074725 76.827 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1 1.0834 1.0651 8.2135 8 Median 1.0788 1.0764 NaN 1 0 Median 1.0927 0.97848 NaN 1 0 Median 1.0117 1.0799 9.5986 2 0 Median 1.0981 0.9709 11.617 2 0 Median 0.95006 1.1161 NaN 1 0 Median 1.1591 1.0929 NaN 1 0 Median 16785000 7899000 8885800 4446400 2159400 2287000 1798700 857750 940950 5593900 2705800 2888100 3677400 1577400 2100000 458630 212500 246130 809780 386160 423620 28428 3497 29906 149143;149144;149145;149146;149147;149148;149149;149150 150085;150086;150087;150088 150085 4 RIFHTVTTTDDPVIRK DRITTRSEKPLRSIKRIFHTVTTTDDPVIR IFHTVTTTDDPVIRKLAKTQGNVFATDAIL K R I R K L 0 2 0 2 0 0 0 0 1 2 0 1 0 1 1 0 4 0 0 2 0 0 16 2 1898.0374 O15371;B0QYA5;B0QYA4 O15371 222 237 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 4 0.0018779 31.876 By MS/MS 1 0.85388 0.86201 NaN 1 Median 0.85388 0.86201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3871300 2001400 1869800 3871300 2001400 1869800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28429 1540 29907 149151 150089 150089 1 RIFILGPSHHVPLSR CAAHAYKQVDPSITRRIFILGPSHHVPLSR RIFILGPSHHVPLSRCALSSVDIYRTPLYD R R I S R C 0 2 0 0 0 0 0 1 2 2 2 0 0 1 2 2 0 0 0 1 0 0 15 1 1727.9947 Q9Y316 Q9Y316 73 87 MEMO1 Protein MEMO1 yes yes 4 0.045383 17.281 By MS/MS 1 1.4477 1.5585 NaN 1 Median 1.4477 1.5585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2601200 1444000 1157300 2601200 1444000 1157300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28430 4403 29908 149152 150090 150090 0 RIFQEPTEPK PALSGTRVLASKTARRIFQEPTEPKTKAAA SKTARRIFQEPTEPKTKAAAPGVEDEPLLR R R I P K T 0 1 0 0 0 1 2 0 0 1 0 1 0 1 2 0 1 0 0 0 0 0 10 1 1243.6561 P31350;A0A286YFD6 P31350 50 59 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2;3 0.0081108 50.04 By MS/MS By MS/MS 2 1 0.88464 0.82951 48.495 3 Median 0.94155 1.0075 66.721 2 2 Median 0.88464 0.82951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7285000 3305900 3979200 4117600 1832600 2285000 3167500 1473300 1694200 0 0 0 0 0 0 0 0 0 0 0 0 28431 2203 29909 149153;149154;149155 150091;150092;150093;150094 150093 4 RIGFDVVTLSGTR PVDGFYTEEVRQGGRRIGFDVVTLSGTRGP GRRIGFDVVTLSGTRGPLSRVGLEPPPGKR R R I T R G 0 2 0 1 0 0 0 2 0 1 1 0 0 1 0 1 2 0 0 2 0 0 13 1 1419.7834 Q5TDF0;Q9BSD7 Q5TDF0 47 59 NTPCR Cancer-related nucleoside-triphosphatase yes no 2;3 1.2465E-06 97.463 By MS/MS By matching By MS/MS By matching 2 2 3 1 1.1366 1.1913 21.214 8 Median 1.1366 1.215 0.35835 2 0 Median 1.3718 1.2091 13.872 2 0 Median 1.1066 1.1473 25.783 3 0 Plateau 1.4898 1.334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35789000 16840000 18949000 18933000 8287000 10646000 653250 289160 364090 15612000 8041600 7570400 590910 221980 368920 0 0 0 0 0 0 28432 3102 29910 149156;149157;149158;149159;149160;149161;149162;149163 150095;150096;150097;150098;150099;150100 150096 6 RIGIFGQDEDVTSK MITGDNKGTAVAICRRIGIFGQDEDVTSKA RRIGIFGQDEDVTSKAFTGREFDELNPSAQ R R I S K A 0 1 0 2 0 1 1 2 0 2 0 1 0 1 0 1 1 0 0 1 0 0 14 1 1563.7893 P16615;H7C5W9 P16615 637 650 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 3 7.2821E-05 73.834 By matching By MS/MS By matching 1 1 1 1.2896 1.1909 36.723 3 Median 1.547 1.5953 NaN 1 0 Median 1.2896 1.1909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89646 0.76906 NaN 1 0 Median 23553000 9468600 14084000 5894400 2149200 3745200 17478000 7232900 10245000 0 0 0 0 0 0 0 0 0 180300 86507 93789 28433 2031 29911 149164;149165;149166 150101 150101 1 RIHLELR ______________________________ ______________________________ R R I L R N 0 2 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 1 935.56648 P39687;H0YN26;H7BZ09;Q92688 P39687 6 12 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B no no 2 0.013983 83.265 By MS/MS By matching 1 1 1.2077 1.1547 1.2074 2 Median 1.0635 1.1449 NaN 1 0 Median 1.3714 1.1646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11924000 5276900 6647300 7129000 3270000 3859000 4795300 2006900 2788400 0 0 0 0 0 0 0 0 0 0 0 0 28434 2282;3549 29912 149167;149168 150102;150103 150103 2 RIHQESELHSYLSR LRIAKKKRWNSIEERRIHQESELHSYLSRL RRIHQESELHSYLSRLIAAERERELEECQR R R I S R L 0 2 0 0 0 1 2 0 2 1 2 0 0 0 0 3 0 0 1 0 0 0 14 1 1753.886 Q9UNE7;H3BTA3;H3BS86;H3BUD0 Q9UNE7 154 167 STUB1 E3 ubiquitin-protein ligase CHIP yes no 3;4 1.6962E-08 126.56 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2722 1.0861 27.998 6 Linear 1.1249 1.211 NaN 1 0 Median 1.0194 0.93829 14.644 2 0 Median 1.0927 1.1405 NaN 1 0 Median 0.86702 0.80909 47.682 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52197000 25850000 26347000 9821400 4591300 5230100 15571000 7928900 7641800 9593700 4711200 4882400 17212000 8618700 8592800 0 0 0 0 0 0 28435 4342 29913 149169;149170;149171;149172;149173;149174 150104;150105;150106;150107;150108;150109;150110;150111 150107 8 RIILEAEK ESSAKENQTAVDVFRRIILEAEKMDGAASQ TAVDVFRRIILEAEKMDGAASQGKSSCSVM R R I E K M 1 1 0 0 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 1 970.58113 Q15382;C9J931 Q15382 162 169 RHEB GTP-binding protein Rheb yes no 2 0.0084691 73.26 By matching By MS/MS By matching By matching 2 2 1 1 1.0466 0.93643 29.084 6 Median 1.2451 1.1963 0.46243 2 0 Median 1.0466 0.93643 8.8681 2 0 Median NaN NaN NaN 0 0 Median 0.98704 0.87891 NaN 1 0 Median 0.51491 0.54487 NaN 1 0 Median NaN NaN NaN 0 0 Median 13902000 6564200 7337500 8528500 3689600 4838900 3252400 1599500 1652900 0 0 0 395610 204840 190770 1725200 1070200 654980 0 0 0 28436 2943 29914 149175;149176;149177;149178;149179;149180 150112;150113 150113 2 RIILLAEGR NIKPQVDRYRLKNGRRIILLAEGRLVNLGC RLKNGRRIILLAEGRLVNLGCAMGHPSFVM R R I G R L 1 2 0 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1039.6502 P23526 P23526 335 343 AHCY Adenosylhomocysteinase yes yes 2 0.00061774 128.28 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 1 1.2337 1.2716 14.949 12 Median 1.0411 1.1208 10.192 5 0 Median 1.4826 1.3508 6.5704 4 0 Median 1.1062 1.1654 27.223 2 0 Median 1.0951 1.0214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88635000 39674000 48961000 46522000 21531000 24991000 26236000 11023000 15212000 8174200 3598000 4576200 7703500 3521900 4181700 0 0 0 0 0 0 28437 2116 29915 149181;149182;149183;149184;149185;149186;149187;149188;149189;149190;149191;149192 150114;150115;150116;150117;150118;150119;150120;150121;150122 150115 9 RIILLVK AQSLKEMVSKLKKPRRIILLVKAGQAVDDF VSKLKKPRRIILLVKAGQAVDDFIEKLVPL R R I V K A 0 1 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 7 1 853.61131 P52209;K7EMN2;K7EM49;K7EPF6 P52209 70 76 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.062888 43 By MS/MS By matching By matching By matching 2 1 1 1 1.2889 1.2353 6.6726 5 Median 1.2207 1.2059 8.7403 2 0 Median 1.3555 1.2353 NaN 1 0 Median 1.1701 1.1853 NaN 1 0 Median 1.408 1.3456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78990000 33970000 45019000 24541000 10988000 13553000 34353000 14106000 20247000 6637300 3110800 3526500 13458000 5765100 7692900 0 0 0 0 0 0 28438 2447 29916 149193;149194;149195;149196;149197 150123 150123 1 RIIPEITAMK KKLQLEETMPSPYGRRIIPEITAMKADASK SPYGRRIIPEITAMKADASKKLLKKKKGDL R R I M K A 1 1 0 0 0 0 1 0 0 3 0 1 1 0 1 0 1 0 0 0 0 0 10 1 1170.6795 Q02880 Q02880 1241 1250 TOP2B DNA topoisomerase 2-beta yes yes 2 0.00049994 91.867 By MS/MS 1 0.66942 0.80248 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66942 0.80248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10275000 5904000 4370700 0 0 0 0 0 0 10275000 5904000 4370700 0 0 0 0 0 0 0 0 0 28439 2704 29917 149198 150124;150125 150125 2 RIKPAATSHVEGSGGVSAK FPASFRKSTYWMKMRRIKPAATSHVEGSGG AATSHVEGSGGVSAKGKRKPRQEEDEDYRE R R I A K G 3 1 0 0 0 0 1 3 1 1 0 2 0 0 1 3 1 0 0 2 0 0 19 2 1850.9963 G3XAG1;Q96ME7 G3XAG1 81 99 ZNF512 Zinc finger protein 512 yes no 4 0.010243 22.221 By MS/MS By MS/MS 5 1 0.77088 0.90734 18.161 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73792 0.86751 18.548 5 0 Median 1.1068 1.031 NaN 1 0 Median 4454400 2460300 1994000 0 0 0 0 0 0 0 0 0 0 0 0 4045400 2251900 1793600 408960 208490 200470 28440 1124 29918 149199;149200;149201;149202;149203;149204 150126;150127 150127 2 RILDEIEEHNIK KADTLTLKERERLKKRILDEIEEHNIKIYH LKKRILDEIEEHNIKIYHLPDAESDEDEDF K R I I K I 0 1 1 1 0 0 3 0 1 3 1 1 0 0 0 0 0 0 0 0 0 0 12 1 1507.7995 Q15019;B5MCX3;H7C2Y0;C9J2Q4 Q15019 198 209 SEPT2 Septin-2 yes no 3 2.1715E-05 92.19 By MS/MS By MS/MS 1 1 1.1166 1.1104 2.2599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95626 1.0928 NaN 1 0 Median 1.3039 1.1283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72202000 33815000 38388000 0 0 0 0 0 0 59918000 28317000 31601000 12284000 5497100 6786900 0 0 0 0 0 0 28441 2914 29919 149205;149206 150128;150129;150130 150129 3 RILDSAEFIK VSFKAPSYLEISSMRRILDSAEFIKFTVIR ISSMRRILDSAEFIKFTVIRPFPGLVINNQ R R I I K F 1 1 0 1 0 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1190.6659 P78347;A0A494C1K3 P78347 928 937 GTF2I General transcription factor II-I yes no 2 0.00080966 115.71 By matching By MS/MS By matching By matching 1 1 2 1 0.98489 0.86723 15.818 5 Median 0.792 0.82255 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68142 0.77277 NaN 1 0 Median 1.177 1.0807 4.3474 2 0 Median NaN NaN NaN 0 0 Median 0.98489 0.86723 NaN 1 0 Median 26845000 14820000 12025000 2692400 1597400 1095100 0 0 0 21126000 11762000 9364300 2565000 1207500 1357600 0 0 0 460730 252520 208210 28442 2642 29920 149207;149208;149209;149210;149211 150131;150132 150132 2 RILELDQFK KNIYVLQELDNPGAKRILELDQFKGQQGQK DNPGAKRILELDQFKGQQGQKRFQDMMGHG K R I F K G 0 1 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 1 1160.6554 P12956;B1AHC9 P12956 115 123 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 9.6007E-05 150.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 1 1.239 1.2777 37.397 9 Median 1.2897 1.2857 23.209 2 0 Median 1.3993 1.2777 NaN 1 0 Median 1.3856 1.4757 66.248 3 0 Plateau 1.2313 1.0928 23.807 2 0 Median NaN NaN NaN 0 0 Median 1.239 1.0186 NaN 1 0 Median 99868000 41340000 58529000 27028000 11765000 15264000 7310900 2734400 4576600 54959000 22404000 32555000 10051000 4111100 5940100 0 0 0 518750 325270 193480 28443 1985 29921 149212;149213;149214;149215;149216;149217;149218;149219;149220 150133;150134;150135;150136;150137 150135 5 RILELDQFKGQQGQK KNIYVLQELDNPGAKRILELDQFKGQQGQK RILELDQFKGQQGQKRFQDMMGHGSDYSLS K R I Q K R 0 1 0 1 0 4 1 2 0 1 2 2 0 1 0 0 0 0 0 0 0 0 15 2 1786.969 P12956;B1AHC9 P12956 115 129 XRCC6 X-ray repair cross-complementing protein 6 yes no 3 0.00012527 62.68 By MS/MS By matching 1 1 0.98671 1.0399 17.746 2 Median 1.089 1.1789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89403 0.91724 NaN 1 0 Median 15330000 6619400 8710900 14910000 6429000 8480800 0 0 0 0 0 0 0 0 0 0 0 0 420510 190370 230140 28444 1985 29922 149221;149222 150138 150138 1 RILELSGSSSEDSEK SEPACLAEIEEDKARRILELSGSSSEDSEK RILELSGSSSEDSEKVIAGLYQRAFQHLSE R R I E K V 0 1 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 15 1 1635.7952 P78527 P78527 3358 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.9732E-09 157.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 5 3 2 1.0926 1.1524 35.124 14 Median 0.7211 0.73993 4.0922 2 0 Median 1.3247 1.2714 23.136 3 0 Median 0.92229 1.0618 19.237 4 0 Median 1.4704 1.3744 7.2747 3 0 Plateau NaN NaN NaN 0 0 Median 0.77676 0.75563 84.644 2 0 Median 90392000 44045000 46347000 8835700 5214500 3621200 31172000 13582000 17590000 42061000 21776000 20285000 4861500 1861300 3000200 0 0 0 3461300 1611700 1849700 28445 2647 29923 149223;149224;149225;149226;149227;149228;149229;149230;149231;149232;149233;149234;149235;149236;149237 150139;150140;150141;150142;150143;150144;150145;150146;150147;150148;150149;150150 150143 12 RILELSGSSSEDSEKVIAGLYQR SEPACLAEIEEDKARRILELSGSSSEDSEK SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE R R I Q R A 1 2 0 1 0 1 3 2 0 2 3 1 0 0 0 5 0 0 1 1 0 0 23 2 2536.3133 P78527 P78527 3358 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.048812 23.296 By MS/MS 1 0.8978 0.8661 NaN 1 Median 0.8978 0.8661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5170200 2127300 3042900 5170200 2127300 3042900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28446 2647 29924 149238 150151 150151 0 RILGLLDAYLK HHNKQATENAKEEVRRILGLLDAYLKTRTF EEVRRILGLLDAYLKTRTFLVGERVTLADI R R I L K T 1 1 0 1 0 0 0 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 11 1 1273.7758 P26641 P26641 137 147 EEF1G Elongation factor 1-gamma yes yes 2;3 0.00016118 121.73 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 3 6 3 8 1.1341 1.0462 20.737 26 Median 1.2599 1.2703 1.1362 2 0 Median 1.0884 1.0058 5.8551 4 0 Median 1.3312 1.3943 5.9278 3 0 Median 1.1881 1.082 6.6523 6 0 Median 1.3804 1.4325 39.513 3 0 Median 1.0156 0.90867 8.7123 8 0 Median 1768200000 831990000 936190000 8316100 3509600 4806500 62026000 30575000 31451000 182730000 81705000 101020000 1489500000 704590000 784880000 2102500 639670 1462900 23546000 10977000 12569000 28447 2149 29925 149239;149240;149241;149242;149243;149244;149245;149246;149247;149248;149249;149250;149251;149252;149253;149254;149255;149256;149257;149258;149259;149260;149261;149262;149263;149264 150152;150153;150154;150155;150156;150157;150158;150159;150160;150161;150162;150163;150164;150165 150154 14 RILNFLMHPK VLDLERSGVNSELVKRILNFLMHPKPSGKP SELVKRILNFLMHPKPSGKPLPKSKKTCSK K R I P K P 0 1 1 0 0 0 0 0 1 1 2 1 1 1 1 0 0 0 0 0 0 0 10 1 1267.7223 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 178 187 DEK Protein DEK yes no 3 0.00017309 102.07 By MS/MS By MS/MS 1 3 1.0509 0.99531 23.577 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74617 0.75722 NaN 1 0 Median 1.2311 1.1552 19.572 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28389000 15185000 13204000 0 0 0 0 0 0 14575000 8947800 5627400 13813000 6237100 7576300 0 0 0 0 0 0 28448 1166 29926 149265;149266;149267;149268 150166;150167;150168;150169;150170 150166 5 RILPKPTR EKKFSGKHVVFIAQRRILPKPTRKSRTKNK VVFIAQRRILPKPTRKSRTKNKQKRPRSRT R R I T R K 0 2 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 8 2 979.62908 P62081;A0A2R8Y623;B5MCP9 P62081 99 106 RPS7 40S ribosomal protein S7 yes no 2 0.048355 54.157 By matching By matching By MS/MS By matching By matching By matching 1 1 1 1 2 1 0.86904 0.83804 16.243 7 Median 0.71067 0.71304 NaN 1 0 Median 0.73472 0.68044 NaN 1 0 Median 0.87647 1.0058 NaN 1 0 Median 0.90826 0.78749 NaN 1 0 Median 0.82459 0.93451 15.409 2 0 Median 0.92976 0.89502 NaN 1 0 Median 4477200 2345800 2131400 523690 264610 259080 400030 213020 187010 2608500 1381000 1227500 260000 129800 130200 611510 326120 285390 73434 31206 42228 28449 2568 29927 149269;149270;149271;149272;149273;149274;149275 150171 150171 1 RILQSLEK QLSAQSYGVTSSTARRILQSLEKMSSPLAD VTSSTARRILQSLEKMSSPLADAKRIPSIV R R I E K M 0 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 1 985.59203 P49790 P49790 310 317 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.0066369 80.229 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 1.0977 1.164 15.068 8 Median 1.0697 1.0949 NaN 1 0 Median 1.1256 1.0793 NaN 1 0 Median 1.185 1.3865 13.539 2 0 Median 1.2819 1.2375 NaN 1 0 Median 0.92658 1.0488 NaN 1 0 Median 1.2684 1.1197 23.105 2 0 Median 15312000 7459300 7852300 1285100 602340 682790 1112400 504270 608090 6645000 3222600 3422400 932210 391090 541130 3178700 1747400 1431300 2158100 991560 1166500 28450 2400 29928 149276;149277;149278;149279;149280;149281;149282;149283 150172;150173;150174;150175;150176;150177;150178;150179;150180 150173 9 RILSKPIEVQVGGR MFSATFPRAMEALARRILSKPIEVQVGGRS RRILSKPIEVQVGGRSVVCSDVEQQVIVIE R R I G R S 0 2 0 0 0 1 1 2 0 2 1 1 0 0 1 1 0 0 0 2 0 0 14 2 1550.9257 Q7L014;A0A0C4DG89 Q7L014 573 586 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 1.6714E-08 103.76 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 2 1.0668 1.0554 13.18 7 Median 0.97301 1.048 NaN 1 0 Median 1.2914 1.4007 NaN 1 0 Median 0.98734 1.1371 13.968 2 0 Median 1.0525 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2641 1.0962 16.25 2 0 Median 51600000 25757000 25843000 8457200 4225300 4231900 3135400 1663600 1471800 34147000 17090000 17058000 2585800 1545600 1040200 0 0 0 3273700 1232400 2041400 28451 3216 29929 149284;149285;149286;149287;149288;149289;149290 150181;150182;150183;150184;150185;150186;150187 150183 6 RILVATNLFGR EERLSRYQQFKDFQRRILVATNLFGRGMDI DFQRRILVATNLFGRGMDIERVNIAFNYDM R R I G R G 1 2 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 11 1 1258.751 H0Y400;O00148;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3 Q13838 339 349 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 4.3269E-07 168.46 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 5 4 2 1.2392 1.253 13.158 16 Median 1.1558 1.1672 NaN 1 0 Median 1.274 1.1489 NaN 1 0 Median 1.1963 1.2952 4.5932 3 0 Median 1.3049 1.2172 18.014 5 0 Median 1.1933 1.2923 13.642 4 1 Median 1.4569 1.2847 21.891 2 0 Median 168800000 74781000 94023000 5892300 2836100 3056300 416870 141230 275630 89754000 39965000 49789000 35720000 15037000 20683000 33987000 15537000 18450000 3035200 1265300 1769900 28452 2842;1441;1146 29930 149291;149292;149293;149294;149295;149296;149297;149298;149299;149300;149301;149302;149303;149304;149305;149306 150188;150189;150190;150191;150192;150193;150194;150195;150196;150197;150198;150199;150200;150201 150190 14 RIMLFTNEDNPHGNDSAK CANLFSDVQFKMSHKRIMLFTNEDNPHGND LFTNEDNPHGNDSAKASRARTKAGDLRDTG K R I A K A 1 1 3 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 18 1 2057.9589 P12956;B1AHC9 P12956 165 182 XRCC6 X-ray repair cross-complementing protein 6 yes no 3;4 1.0289E-06 77.468 By MS/MS By MS/MS By MS/MS 1 3 1 0.75932 0.69622 21.636 5 Median 0.92917 0.9328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6568 0.69687 20.49 3 1 Plateau 0.75932 0.69622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23683000 13056000 10627000 7254500 3341100 3913400 0 0 0 13521000 8175900 5345100 2907400 1539300 1368100 0 0 0 0 0 0 28453 1985 29931;29932 149307;149308;149309;149310;149311 150202;150203;150204;150205;150206;150207 150203 767 6 RINLLVK RKRLLIDGDGAGDDRRINLLVKSFIKWCNS GDGAGDDRRINLLVKSFIKWCNSGSQEEGY R R I V K S 0 1 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 1 854.57017 Q6I9Y2;H7C5E3 Q6I9Y2 26 32 THOC7 THO complex subunit 7 homolog yes no 2 0.047889 48.174 By MS/MS By matching 1 1 0.86581 0.83262 29.471 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98164 1.0255 NaN 1 0 Median 0.76365 0.67599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12363000 6554800 5808500 0 0 0 0 0 0 10859000 5716800 5142000 1504500 837960 666530 0 0 0 0 0 0 28454 3136 29933 149312;149313 150208;150209 150208 2 RINLTPLK VTLNTLQAWSKTTPRRINLTPLKTDTPPSS WSKTTPRRINLTPLKTDTPPSSVPTSVIST R R I L K T 0 1 1 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 8 1 953.6022 Q13112 Q13112 499 506 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.0051056 86.833 By matching By MS/MS By MS/MS 1 1 1 0.99852 1.0233 15.135 3 Median NaN NaN NaN 0 0 Median 1.0961 1.0233 NaN 1 0 Median 0.99852 1.0606 NaN 1 0 Median 0.87581 0.80303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12331000 5916800 6413700 0 0 0 392070 177900 214170 9415100 4393000 5022200 2523300 1346000 1177300 0 0 0 0 0 0 28455 2786 29934 149314;149315;149316 150210;150211;150212;150213 150211 4 RINMVEELEK PEGQAYDVDFTPPFRRINMVEELEKALGMK TPPFRRINMVEELEKALGMKLPETNLFETE R R I E K A 0 1 1 0 0 0 3 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 10 1 1259.6544 Q15046 Q15046 393 402 KARS Lysine--tRNA ligase yes yes 2 0.00048079 85.676 By MS/MS By matching 1 1 0.87992 0.84151 22.941 2 Median 0.98771 0.98972 NaN 1 0 Median 0.7839 0.7155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27613000 13612000 14001000 19602000 9218300 10383000 8011600 4393700 3617900 0 0 0 0 0 0 0 0 0 0 0 0 28456 2919 29935 149317;149318 150214 150214 1 RINVELSTK KAAIAQLNGKEVKGKRINVELSTKGQKKGP KEVKGKRINVELSTKGQKKGPGLAVQSGDK K R I T K G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 1 1058.6084 Q96PK6 Q96PK6 141 149 RBM14 RNA-binding protein 14 yes yes 2 0.00061934 128.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 3 1.2666 1.1351 14.731 8 Median NaN NaN NaN 0 0 Median 1.4602 1.334 29.383 2 1 Median 1.0831 1.1504 NaN 1 0 Median 1.2418 1.0993 NaN 1 0 Median 0.95937 1.0556 NaN 1 0 Median 1.4067 1.2772 8.638 3 1 Median 48413000 22989000 25424000 0 0 0 4347700 1540900 2806800 9691300 4936600 4754700 3953300 1789700 2163600 23234000 11704000 11529000 7187100 3017500 4169600 28457 3712 29936 149319;149320;149321;149322;149323;149324;149325;149326 150215;150216;150217;150218;150219;150220;150221;150222;150223;150224;150225 150218 11 RIPADTFAALK ALHAAVIAINEAIDRRIPADTFAALKNPNA AIDRRIPADTFAALKNPNAMLVNLEEPLAS R R I L K N 3 1 0 1 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 11 1 1201.6819 P46940;A0A0J9YXZ5 P46940 231 241 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00022944 94.692 By matching By MS/MS By matching 1 1 1 0.98081 0.95117 40.575 3 Median 0.5117 0.53485 NaN 1 0 Median 1.0145 0.95117 NaN 1 0 Median 0.98081 1.1704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25448000 13188000 12260000 10347000 6033800 4313500 12139000 5878500 6260200 2961700 1275500 1686200 0 0 0 0 0 0 0 0 0 28458 2350 29937 149327;149328;149329 150226;150227;150228;150229 150229 4 RIPGSTEAFPHQHR RLDDQESPVYAAQQRRIPGSTEAFPHQHRV RRIPGSTEAFPHQHRVLAPAPPVYEAVSET R R I H R V 1 2 0 0 0 1 1 1 2 1 0 0 0 1 2 1 1 0 0 0 0 0 14 1 1631.8281 Q96ST3;H3BP90;H3BNZ3;H3BT34;H3BQ76;H3BQ88;H3BNA0;H3BQL7 Q96ST3 19 32 SIN3A Paired amphipathic helix protein Sin3a yes no 3;4 0.00034465 48.659 By MS/MS By MS/MS 2 3 0.81678 0.87218 9.8873 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76073 0.92521 6.085 2 0 Median 0.89231 0.80804 8.5386 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5478000 3118400 2359600 0 0 0 0 0 0 3886800 2268400 1618400 1591200 849980 741250 0 0 0 0 0 0 28459 3737 29938 149330;149331;149332;149333;149334 150230;150231;150232;150233;150234;150235;150236 150231 7 RIPIPELEAR PICEDIGRQMLCYNRRIPIPELEARIDAVN LCYNRRIPIPELEARIDAVNAETIREVCTK R R I A R I 1 2 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 10 1 1192.6928 O75439;G3V0E4 O75439 432 441 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.00048018 85.731 By MS/MS By matching By matching 2 1 1 0.86475 0.86625 15.558 4 Median 0.75248 0.75561 17.494 2 0 Median NaN NaN NaN 0 0 Median 0.8732 0.96051 NaN 1 0 Median 1.0243 0.87754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16133000 9871100 6261400 10345000 6937700 3407000 0 0 0 5131200 2637800 2493500 656590 295680 360910 0 0 0 0 0 0 28460 1673 29939 149335;149336;149337;149338 150237 150237 1 RIPLAEWESR PVCEDIGRSLLTYGRRIPLAEWESRIAEVD LTYGRRIPLAEWESRIAEVDASVVREICSK R R I S R I 1 2 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 10 1 1255.6673 P31930 P31930 423 432 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2;3 0.0010098 72.006 By MS/MS By matching By matching By MS/MS By matching 2 3 1 1 1 1.0549 1.1023 50.265 8 Median 1.0549 1.0653 6.9642 2 0 Median 1.7525 1.5805 87.964 3 0 Plateau 1.0029 1.0858 NaN 1 0 Median 1.3285 1.2392 NaN 1 0 Median 0.64576 0.69664 NaN 1 0 Median NaN NaN NaN 0 0 Median 70251000 31528000 38723000 27163000 12443000 14720000 19491000 7412900 12078000 7697600 3031700 4665800 8661000 4836300 3824700 7238400 3804900 3433500 0 0 0 28461 2205 29940 149339;149340;149341;149342;149343;149344;149345;149346 150238;150239;150240;150241 150238 4 RIPSIVSSPLNSPLDR LQSLEKMSSPLADAKRIPSIVSSPLNSPLD IPSIVSSPLNSPLDRSGIDITDFQAKREKV K R I D R S 0 2 1 1 0 0 0 0 0 2 2 0 0 0 3 4 0 0 0 1 0 0 16 1 1749.9737 P49790 P49790 327 342 NUP153 Nuclear pore complex protein Nup153 yes yes 3 2.8013E-05 67.646 By MS/MS 2 0.55275 0.68513 13.488 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55275 0.68513 13.488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8143000 5128700 3014300 0 0 0 0 0 0 8143000 5128700 3014300 0 0 0 0 0 0 0 0 0 28462 2400 29941 149347;149348 150242 150242 1 RIPWTAASSQLK AALRRSINQPVAFVRRIPWTAASSQLKEHF FVRRIPWTAASSQLKEHFAQFGHVRRCILP R R I L K E 2 1 0 0 0 1 0 0 0 1 1 1 0 0 1 2 1 1 0 0 0 0 12 1 1356.7514 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJW7;H0YJ07;H0YJU7 Q9GZT3 25 36 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2;3 1.8986E-51 196.24 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.3316 1.2194 65.858 7 Median 0.94438 0.92605 4.941 2 0 Median 1.4149 1.2492 105.22 3 1 Median 1.3316 1.3823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4067 1.2194 NaN 1 0 Median 216030000 87794000 128240000 46365000 22990000 23375000 159930000 60367000 99558000 9315100 4246800 5068300 0 0 0 0 0 0 424640 190300 234340 28463 3914 29942 149349;149350;149351;149352;149353;149354;149355 150243;150244;150245;150246;150247;150248;150249 150249 6 RIPYAPSGEIPK IGFQIETIGKKVSSKRIPYAPSGEIPKFSL SSKRIPYAPSGEIPKFSLQDPPNKKPKV__ K R I P K F 1 1 0 0 0 0 1 1 0 2 0 1 0 0 3 1 0 0 1 0 0 0 12 1 1326.7296 O60701 O60701 470 481 UGDH UDP-glucose 6-dehydrogenase yes yes 2 0.0054227 45.161 By MS/MS 1 0.72546 0.72458 NaN 1 Median 0.72546 0.72458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4620600 2530700 2089800 4620600 2530700 2089800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28464 1627 29943 149356 150250 150250 1 RIQEIIEQLDVTTSEYEK AMLLKGKGDKAQIEKRIQEIIEQLDVTTSE EIIEQLDVTTSEYEKEKLNERLAKLSDGVA K R I E K E 0 1 0 1 0 2 4 0 0 3 1 1 0 0 0 1 2 0 1 1 0 0 18 1 2193.1165 P10809 P10809 370 387 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3 8.0235E-07 79.511 By matching By MS/MS 1 2 1.3835 1.2639 15.861 3 Median 1.5971 1.6149 NaN 1 0 Median 1.3478 1.2315 3.6688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10909000 4880300 6028400 2631500 1130700 1500800 8277200 3749600 4527600 0 0 0 0 0 0 0 0 0 0 0 0 28465 1947 29944 149357;149358;149359 150251;150252 150252 2 RIQEIIEQLDVTTSEYEKEK AMLLKGKGDKAQIEKRIQEIIEQLDVTTSE IEQLDVTTSEYEKEKLNERLAKLSDGVAVL K R I E K L 0 1 0 1 0 2 5 0 0 3 1 2 0 0 0 1 2 0 1 1 0 0 20 2 2450.254 P10809 P10809 370 389 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3;4 3.2465E-19 114.46 By MS/MS By MS/MS 2 1 1.1281 1.1115 10.793 3 Median 1.1161 1.2082 11.802 2 0 Median 1.1281 1.0732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103340000 50615000 52728000 90737000 44571000 46166000 12606000 6043800 6562400 0 0 0 0 0 0 0 0 0 0 0 0 28466 1947 29945 149360;149361;149362 150253;150254;150255;150256 150254 4 RIQLPSEK PSDITVAQFMWIIRKRIQLPSEKAIFLFVD FMWIIRKRIQLPSEKAIFLFVDKTVPQSSL K R I E K A 0 1 0 0 0 1 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 0 8 1 969.56073 P60520;H3BSM5;H3BQ50 P60520 67 74 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2 0.038481 41.429 By matching By MS/MS By matching 1 2 1 1.0046 0.90252 18.086 4 Median 1.2056 1.1822 NaN 1 0 Median 1.0046 0.90252 1.2776 2 0 Median NaN NaN NaN 0 0 Median 0.93951 0.76403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4600800 2116900 2483900 1314800 449460 865300 3068700 1538600 1530100 0 0 0 217380 128880 88492 0 0 0 0 0 0 28467 2526 29946 149363;149364;149365;149366 150257 150257 1 RIQLVEEELDR RAREQAEAEVASLNRRIQLVEEELDRAQER SLNRRIQLVEEELDRAQERLATALQKLEEA R R I D R A 0 2 0 1 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1398.7467 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 55 65 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 2;3 4.5409E-05 118.9 By MS/MS By MS/MS By MS/MS 1 3 3 1.5816 1.6906 63.227 7 Median 1.5704 1.6906 NaN 1 1 Median 6.4119 5.9743 104.6 3 0 Plateau 1.6828 1.7448 25.491 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60774000 23831000 36942000 9155300 4065000 5090300 19625000 6401000 13224000 31993000 13365000 18628000 0 0 0 0 0 0 0 0 0 + 28468 63;1303;2629;1193;1249 29947 149367;149368;149369;149370;149371;149372;149373 150258;150259;150260;150261;150262;150263 150258 6 RIQLVEEELDRAQER RAREQAEAEVASLNRRIQLVEEELDRAQER RIQLVEEELDRAQERLATALQKLEEAEKAA R R I E R L 1 3 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 15 2 1882.9861 A0A087WWU8;D6R904;A0A494C0G0;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;H0YKX5;H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;A0A2R8YEU4 A0A087WWU8 55 69 TPM3;TPM1;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain no no 3 1.8039E-05 83.351 By MS/MS By MS/MS 1 1 1.1071 1.0919 3.5536 2 Median 1.1012 1.0648 NaN 1 0 Median 1.113 1.1197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30193000 14364000 15829000 23389000 11214000 12176000 6803900 3150300 3653600 0 0 0 0 0 0 0 0 0 0 0 0 + 28469 63;1303;2629;1193;1249 29948 149374;149375 150264;150265;150266 150264 3 RIQQLPDHFGPGPVNVVLR YVNKHGNFGPHLDPKRIQQLPDHFGPGPVN LPDHFGPGPVNVVLRRIVQACVDCALETKT K R I L R R 0 2 1 1 0 2 0 2 1 1 2 0 0 1 3 0 0 0 0 3 0 0 19 1 2141.1858 Q9UQR0;B4DRC2 Q9UQR0 375 393 SCML2 Sex comb on midleg-like protein 2 yes no 3 1.2312E-05 47.568 By MS/MS 1 0.39114 0.43649 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39114 0.43649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229100 2883700 1345300 0 0 0 0 0 0 4229100 2883700 1345300 0 0 0 0 0 0 0 0 0 28470 4363 29949 149376 150267 150267 1 RIQQLTEEIGR EEYRKLLSEKEVHTKRIQQLTEEIGRLKAE VHTKRIQQLTEEIGRLKAEIARSNASLTNN K R I G R L 0 2 0 0 0 2 2 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 11 1 1341.7365 P12270 P12270 1367 1377 TPR Nucleoprotein TPR yes yes 2;3 4.8549E-22 203.02 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 0.89134 1.0166 44.607 8 Median 1.2717 1.3709 54.147 2 0 Median 0.71871 0.67361 NaN 1 1 Median 0.92356 1.0236 7.9772 3 2 Median 0.80193 0.73669 73.331 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82767000 40288000 42478000 16753000 5777900 10975000 13359000 7216300 6142200 45913000 23704000 22209000 6741800 3590400 3151400 0 0 0 0 0 0 28471 1978 29950 149377;149378;149379;149380;149381;149382;149383;149384 150268;150269;150270;150271;150272;150273;150274;150275;150276;150277;150278 150273 11 RIQVEQTRDEDLDTDSLD EEQMETEHINPVTEKRIQVEQTRDEDLDTD VEQTRDEDLDTDSLD_______________ K R I L D - 0 2 0 5 0 2 2 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 18 2 2146.9978 V9GYT7 V9GYT7 48 65 PSIP1 yes yes 3 0.00088623 32.387 By MS/MS 2 0.85326 0.90893 14.134 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85326 0.90893 14.134 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7967300 4546800 3420500 0 0 0 0 0 0 7967300 4546800 3420500 0 0 0 0 0 0 0 0 0 28472 4563 29951 149385;149386 150279;150280 150280 2 RISAISVAER GPPEKVANIICTQPRRISAISVAERVAKER CTQPRRISAISVAERVAKERAERVGLTVGY R R I E R V 2 2 0 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 10 1 1100.6302 Q6P158;Q9H2U1;E7EWK3 Q6P158 603 612 DHX57;DHX36 Putative ATP-dependent RNA helicase DHX57;ATP-dependent RNA helicase DHX36 no no 2 0.0032599 69.276 By MS/MS 2 0.77404 0.74624 9.6076 2 Median NaN NaN NaN 0 0 Median 0.77404 0.74624 9.6076 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8681000 4970300 3710600 0 0 0 8681000 4970300 3710600 0 0 0 0 0 0 0 0 0 0 0 0 28473 3148;902 29952 149387;149388 150281;150282 150282 2 RISAVSVAER NDRAAECNIVVTQPRRISAVSVAERVAFER VTQPRRISAVSVAERVAFERGEEPGKSCGY R R I E R V 2 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1086.6146 Q08211 Q08211 447 456 DHX9 ATP-dependent RNA helicase A yes yes 2 4.8591E-10 169.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 5 5 1.4401 1.3378 10.222 19 Median 1.4029 1.5587 11.117 3 0 Plateau 1.4401 1.3722 13.883 3 0 Median 1.1836 1.4395 NaN 1 0 Median 1.5006 1.4129 2.3668 2 0 Median 1.1475 1.2468 12.813 5 1 Median 1.4799 1.3352 8.5562 5 0 Median 317210000 137940000 179260000 10094000 4064900 6029000 72847000 29063000 43783000 56908000 26167000 30741000 8056600 3443900 4612800 122950000 56891000 66057000 46353000 18314000 28039000 28474 2736 29953 149389;149390;149391;149392;149393;149394;149395;149396;149397;149398;149399;149400;149401;149402;149403;149404;149405;149406;149407 150283;150284;150285;150286;150287;150288;150289;150290;150291;150292;150293;150294;150295;150296;150297;150298;150299;150300;150301;150302 150286 20 RISAVSVAQR EGRGARCNVIITQPRRISAVSVAQRVSHEL ITQPRRISAVSVAQRVSHELGPSLRRNVGF R R I Q R V 2 2 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1085.6305 H7BXY3;Q7L2E3 H7BXY3 465 474 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.044278 43.651 By MS/MS 1 1.1348 1.094 NaN 1 Median NaN NaN NaN 0 0 Median 1.1348 1.094 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4427600 1963800 2463800 0 0 0 4427600 1963800 2463800 0 0 0 0 0 0 0 0 0 0 0 0 28475 1244 29954 149408 150303 150303 1 RISEQFTAMFR ATFIGNSTAIQELFKRISEQFTAMFRRKAF ELFKRISEQFTAMFRRKAFLHWYTGEGMDE K R I F R R 1 2 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 11 1 1384.6922 A0A0B4J269;Q13509;P04350;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 380 390 TUBB3;TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-3 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 8.2752E-05 144.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 7 2 2 3 2 7 1.2396 1.1842 19.744 23 Median 1.2251 1.2518 8.7639 7 1 Median 1.2459 1.1235 7.4342 2 0 Median 1.0561 1.1435 5.7848 2 1 Median 1.5283 1.4192 13.544 3 0 Median 1.6391 1.7539 13.405 2 0 Median 1.2622 1.1159 21.869 7 0 Median 205660000 91074000 114590000 168200000 75531000 92670000 5573400 2596100 2977300 9495900 4305300 5190600 4717600 1660900 3056700 6119300 2474700 3644600 11557000 4505300 7051600 28476 2634;1887;3849;2844;1849;216 29955;29956 149409;149410;149411;149412;149413;149414;149415;149416;149417;149418;149419;149420;149421;149422;149423;149424;149425;149426;149427;149428;149429;149430;149431 150304;150305;150306;150307;150308;150309;150310;150311;150312;150313;150314;150315;150316 150308 89 13 RISEYAADIFYSR CSHDKLHPDKISIMKRISEYAADIFYSRYG MKRISEYAADIFYSRYGGGPRLTVKALCKE K R I S R Y 2 2 0 1 0 0 1 0 0 2 0 0 0 1 0 2 0 0 2 0 0 0 13 1 1589.7838 Q86UV5;A0A0A0MRS6;E9PJH5 Q86UV5 529 541 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2;3 0.0036816 58.676 By MS/MS 2 1.0853 1.32 5.6831 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0853 1.32 5.6831 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4410500 1922500 2488000 0 0 0 0 0 0 4410500 1922500 2488000 0 0 0 0 0 0 0 0 0 28477 3281 29957 149432;149433 150317;150318 150318 2 RISGLIYEETR TKPAIRRLARRGGVKRISGLIYEETRGVLK GGVKRISGLIYEETRGVLKVFLENVIRDAV K R I T R G 0 2 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 1 1335.7147 P62805 P62805 46 56 HIST1H4A Histone H4 yes yes 2;3 3.0905E-40 220.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 22 15 0.98294 1.059 24.218 45 Median 1.1303 1.1215 15.293 3 2 Median 1.4989 1.278 NaN 1 0 Median 0.9272 1.0069 25.615 5 0 Plateau NaN NaN NaN 0 0 Median 0.9337 1.0126 17.68 21 0 Median 1.3907 1.204 28.435 15 0 Median 11963000000 5145200000 6818200000 11679000 4995800 6683400 19697000 6290100 13407000 37626000 19660000 17966000 0 0 0 2137200000 1100600000 1036600000 9757100000 4013600000 5743500000 28478 2597 29958 149434;149435;149436;149437;149438;149439;149440;149441;149442;149443;149444;149445;149446;149447;149448;149449;149450;149451;149452;149453;149454;149455;149456;149457;149458;149459;149460;149461;149462;149463;149464;149465;149466;149467;149468;149469;149470;149471;149472;149473;149474;149475;149476;149477;149478;149479;149480 150319;150320;150321;150322;150323;150324;150325;150326;150327;150328;150329;150330;150331;150332;150333;150334;150335;150336;150337;150338;150339;150340;150341;150342;150343;150344;150345;150346;150347;150348;150349;150350;150351;150352;150353;150354;150355;150356;150357;150358;150359;150360;150361;150362;150363;150364;150365;150366;150367;150368;150369;150370;150371;150372;150373;150374;150375;150376;150377;150378;150379 150364 60 RISGLIYEETRGVLK TKPAIRRLARRGGVKRISGLIYEETRGVLK RISGLIYEETRGVLKVFLENVIRDAVTYTE K R I L K V 0 2 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 15 2 1732.9836 P62805 P62805 46 60 HIST1H4A Histone H4 yes yes 3 0.0012074 61.444 By MS/MS 1 0.77693 0.93164 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77693 0.93164 NaN 1 1 Median NaN NaN NaN 0 0 Median 9347200 5266800 4080400 0 0 0 0 0 0 0 0 0 0 0 0 9347200 5266800 4080400 0 0 0 28479 2597 29959 149481 150380 150380 1 RISHLFFHK LKIINYRDDEKSFSRRISHLFFHKENDWGF EKSFSRRISHLFFHKENDWGFSNFMAWSEV R R I H K E 0 1 0 0 0 0 0 0 2 1 1 1 0 2 0 1 0 0 0 0 0 0 9 1 1183.6614 Q93009;H3BND8;F5H2X1;H3BUV0;H3BTM1;H3BRA2;H3BQD1 Q93009 153 161 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.0060212 50.108 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3612700 0 3612700 0 0 0 0 0 0 1880100 0 1880100 1732500 0 1732500 0 0 0 0 0 0 28480 3574 29960 149482;149483 150381;150382 150382 2 RISIEIFLENINIAK R I A K 1 1 2 0 0 0 2 0 0 5 1 1 0 1 0 1 0 0 0 0 0 0 15 1 1772.0196 REV__Q9UL26 yes yes 2 0.00038016 70.1 By matching By MS/MS 2 2 1.0759 0.8821 11.2 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68829 0.74454 11.119 2 0 Median 1.0919 0.87283 0 2 0 Median 24920000 12974000 11946000 0 0 0 0 0 0 0 0 0 0 0 0 1420000 837340 582630 23500000 12137000 11363000 + 28481 4558 29961 149484;149485;149486;149487 150383;150384 150383 2 RISQIQQLNQMPLYPTEK DKEFLLELLVSRHERRISQIQQLNQMPLYP QIQQLNQMPLYPTEKIIWDENIVPTEYYSG R R I E K I 0 1 1 0 0 4 1 0 0 2 2 1 1 0 2 1 1 0 1 0 0 0 18 1 2186.1518 O60306;H0YH15 O60306 414 431 AQR Intron-binding protein aquarius yes no 3 8.9658E-07 78.661 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.76165 0.85829 11.501 4 Median 0.71631 0.72798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70846 0.80259 NaN 1 0 Median 0.95808 0.92491 NaN 1 0 Median 0.80985 0.91784 NaN 1 0 Median NaN NaN NaN 0 0 Median 12383000 6678700 5704600 2944800 1725400 1219400 0 0 0 6580900 3578700 3002200 137790 79028 58763 2719800 1295600 1424200 0 0 0 28482 1611 29962 149488;149489;149490;149491 150385;150386 150385 2 RITSDFR ENVKSLGTDLMNEMRRITSDFRIGFGSFVE TDLMNEMRRITSDFRIGFGSFVEKTVMPYI R R I F R I 0 2 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 7 1 893.47191 P05556 P05556 175 181 ITGB1 Integrin beta-1 yes yes 2 0.047303 50.966 By MS/MS 1 1.1079 1.0681 NaN 1 Median NaN NaN NaN 0 0 Median 1.1079 1.0681 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6461300 3167200 3294100 0 0 0 6461300 3167200 3294100 0 0 0 0 0 0 0 0 0 0 0 0 28483 1868 29963 149492 150387 150387 1 RITSPLMEPSSIEK IGIQTSEGVCLAVEKRITSPLMEPSSIEKI KRITSPLMEPSSIEKIVEIDAHIGCAMSGL K R I E K I 0 1 0 0 0 0 2 0 0 2 1 1 1 0 2 3 1 0 0 0 0 0 14 1 1586.8338 P28066 P28066 53 66 PSMA5 Proteasome subunit alpha type-5 yes yes 2;3 9.0548E-06 93.345 By MS/MS 2 0.71393 0.74427 7.6475 2 Median 0.71393 0.74427 7.6475 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44553000 24510000 20043000 44553000 24510000 20043000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28484 2159 29964 149493;149494 150388;150389;150390 150389 3 RIVAVTGAEAQK AFVIVTEEAIAKGIRRIVAVTGAEAQKALR GIRRIVAVTGAEAQKALRKAESLKKCLSVM R R I Q K A 3 1 0 0 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 12 1 1241.7092 P49588;H3BPK7 P49588 751 762 AARS Alanine--tRNA ligase, cytoplasmic yes no 2;3 0.00012243 92.538 By MS/MS By MS/MS By matching 3 3 1 1.0681 1.0833 11.777 7 Median 1.0619 1.0833 3.7241 3 0 Median 1.1252 1.0473 12.01 3 0 Median 1.1292 1.3005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19416000 8614200 10802000 3222000 1541600 1680400 16062000 7024500 9037800 131970 48196 83776 0 0 0 0 0 0 0 0 0 28485 2385 29965 149495;149496;149497;149498;149499;149500;149501 150391;150392;150393;150394;150395;150396 150395 6 RIVDGKVVSETNDTK DSSNSMQTIQKTTTRRIVDGKVVSETNDTK RIVDGKVVSETNDTKVLRH___________ R R I T K V 0 1 1 2 0 0 1 1 0 1 0 2 0 0 0 1 2 0 0 3 0 0 15 2 1659.8792 P05783 P05783 412 426 KRT18 Keratin, type I cytoskeletal 18 yes yes 3;4 0.00010502 66.673 By matching By MS/MS By MS/MS 1 1 2 1.3693 1.329 31.412 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4499 1.6586 NaN 1 0 Median 1.0531 0.981 11.612 2 0 Median 13375000 5638500 7736200 373560 149060 224500 0 0 0 0 0 0 0 0 0 8427700 3477000 4950700 4573500 2012400 2561100 28486 1869 29966 149502;149503;149504;149505 150397;150398;150399;150400;150401 150400 5 RIVDLHSR LVDECNEVTDYAIARRIVDLHSRIEESIDR TDYAIARRIVDLHSRIEESIDRVYSLDDIR R R I S R I 0 2 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 1 994.56721 Q14566 Q14566 551 558 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.03924 41.029 By MS/MS By matching 1 1 0.81563 0.87208 10.597 2 Median NaN NaN NaN 0 0 Median 0.95003 0.93994 NaN 1 0 Median 0.70025 0.80912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2111900 1027000 1084900 0 0 0 1786700 868880 917820 325200 158080 167120 0 0 0 0 0 0 0 0 0 28487 2881 29967 149506;149507 150402 150402 1 RIVEGILK IFTDAKESSTVFELKRIVEGILKRPPDEQR STVFELKRIVEGILKRPPDEQRLYKDDQLL K R I L K R 0 1 0 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 1 926.5913 B8ZZU8;I3L0M9;Q15370;A0A0B4J296 B8ZZU8 24 31 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 0.011786 63.48 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.1389 1.0689 7.8251 7 Median 1.1742 1.1718 7.3933 3 0 Plateau 1.2286 1.0844 6.7276 2 0 Median 1.042 1.0824 NaN 1 0 Median 1.1389 0.92616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33956000 16038000 17917000 9065100 4092400 4972800 16538000 7854800 8683000 7866500 3874900 3991600 486220 216410 269810 0 0 0 0 0 0 28488 651 29968 149508;149509;149510;149511;149512;149513;149514 150403;150404;150405;150406;150407 150404 5 RIVEQDTMPPK EADRMLDMGFEPQIRRIVEQDTMPPKGVRH PQIRRIVEQDTMPPKGVRHTMMFSATFPKE R R I P K G 0 1 0 1 0 1 1 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 11 1 1312.6809 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 362 372 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.031623 46.891 By MS/MS 1 0.88239 0.94043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88239 0.94043 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 609510 371400 238120 0 0 0 0 0 0 609510 371400 238120 0 0 0 0 0 0 0 0 0 28489 263 29969 149515 150408 150408 1 RIVPGQFLAVDPK FEKIHQETFGKSGCRRIVPGQFLAVDPKGR CRRIVPGQFLAVDPKGRAVMISAIEKQKLV R R I P K G 1 1 0 1 0 1 0 1 0 1 1 1 0 1 2 0 0 0 0 2 0 0 13 1 1438.8296 Q15393 Q15393 114 126 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 0.0021496 52.579 By MS/MS 2 0.6917 0.79949 17.018 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6917 0.79949 17.018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4635700 2677400 1958300 0 0 0 0 0 0 4635700 2677400 1958300 0 0 0 0 0 0 0 0 0 28490 2946 29970 149516;149517 150409;150410 150409 1 RIVSQLLTLMDGLK AIAPKREKTHGEVERRIVSQLLTLMDGLKQ RRIVSQLLTLMDGLKQRAHVIVMAATNRPN R R I L K Q 0 1 0 1 0 1 0 1 0 1 4 1 1 0 0 1 1 0 0 1 0 0 14 1 1585.9225 P55072 P55072 323 336 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 2.6395E-07 162.6 By MS/MS By MS/MS 3 6 1.2107 1.2156 16.827 9 Median 1.279 1.3293 4.4832 3 0 Plateau 1.1916 1.1495 19.533 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 153620000 67242000 86377000 5299300 2402800 2896600 148320000 64839000 83481000 0 0 0 0 0 0 0 0 0 0 0 0 28491 2494 29971 149518;149519;149520;149521;149522;149523;149524;149525;149526 150411;150412;150413;150414;150415;150416;150417 150416 7 RIWNNVTR ALLLPFRYVLDPPARRIWNNVTRWFVTCVR VLDPPARRIWNNVTRWFVTCVRQPEFRAVL R R I T R W 0 2 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 8 1 1057.5781 P26640;A0A140T936;A0A140T954 P26640 182 189 VARS Valine--tRNA ligase yes no 2 0.013582 60.59 By MS/MS By MS/MS By MS/MS 1 1 1 1.2302 1.1358 4.1555 3 Plateau NaN NaN NaN 0 0 Median 1.2302 1.186 NaN 1 0 Median 0.93389 1.1358 NaN 1 0 Median 1.1149 1.0914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8393100 3737100 4655900 0 0 0 4186800 1916500 2270400 2013700 894310 1119400 2192500 926360 1266100 0 0 0 0 0 0 28492 2148 29972 149527;149528;149529 150418;150419;150420;150421 150421 4 RIYNMEMAR KPCCRRQRESYERCRRIYNMEMARKINFLM SYERCRRIYNMEMARKINFLMRKNRADPWQ R R I A R K 1 2 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 9 1 1182.5638 P82921 P82921 62 70 MRPS21 28S ribosomal protein S21, mitochondrial yes yes 2 0.0045854 66.568 By MS/MS By MS/MS 1 1 1.1549 1.0652 12.766 2 Median 0.97545 0.97323 NaN 1 0 Median 1.3673 1.1658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6907200 2980300 3926900 2075400 998850 1076600 4831800 1981400 2850300 0 0 0 0 0 0 0 0 0 0 0 0 28493 2657 29973 149530;149531 150422;150423 150423 2 RKASGPPVSELITK PVKKKAKKAGATAGKRKASGPPVSELITKA KRKASGPPVSELITKAVAASKERSGVSLAA K R K T K A 1 1 0 0 0 0 1 1 0 1 1 2 0 0 2 2 1 0 0 1 0 0 14 2 1481.8566 P10412;P16402 P16402 34 47 HIST1H1E;HIST1H1D Histone H1.4;Histone H1.3 no no 3 0.0001231 71.98 By MS/MS By MS/MS By MS/MS 2 3 2 0.84158 0.80434 26.119 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.324 1.1848 40.503 2 0 Median 0.67443 0.7861 2.9859 3 0 Median 0.86181 0.79141 5.3762 2 0 Median 137580000 80759000 56823000 0 0 0 0 0 0 0 0 0 2716500 932480 1784000 127840000 76244000 51596000 7026900 3583300 3443700 28494 2028;1937 29974 149532;149533;149534;149535;149536;149537;149538 150424;150425;150426;150427;150428;150429;150430;150431;150432;150433;150434;150435 150432 12 RKAVDEAADALLK KSAQWRTVEGALKERRKAVDEAADALLKAK ERRKAVDEAADALLKAKEELEKMKSVIENA R R K L K A 4 1 0 2 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 13 2 1398.7831 Q16891;B9A067;C9J406;H7C463 Q16891 285 297 IMMT MICOS complex subunit MIC60 yes no 3 0.067414 13.119 By MS/MS 1 0.96635 1.0644 NaN 1 Median 0.96635 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2413900 1335700 1078200 2413900 1335700 1078200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28495 3001 29975 149539 150436 150436 1 RKDDSYFDR EGSYDRYLRMDDYCRRKDDSYFDRYRDSFD MDDYCRRKDDSYFDRYRDSFDGRGPPGPES R R K D R Y 0 2 0 3 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 9 2 1200.5523 Q9HCD5;Q5JY17 Q9HCD5 139 147 NCOA5 Nuclear receptor coactivator 5 yes no 3 0.0021048 54.608 By MS/MS By MS/MS 1 1 0.85438 0.96799 0.22879 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86424 0.96956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84462 0.96642 NaN 1 0 Median NaN NaN NaN 0 0 Median 3362200 1875600 1486600 0 0 0 0 0 0 1961800 1206700 755060 0 0 0 1400500 668900 731570 0 0 0 28496 4028 29976 149540;149541 150437;150438;150439;150440 150438 4 RKDFQYEAMQER PGARENIAYLTHTERRKDFQYEAMQERREA TERRKDFQYEAMQERREAENMAQRGIGVAA R R K E R R 1 2 0 1 0 2 2 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 12 2 1599.7464 Q9UBB9 Q9UBB9 740 751 TFIP11 Tuftelin-interacting protein 11 yes yes 3 0.044315 18.823 By MS/MS 1 0.7237 0.8466 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7237 0.8466 NaN 1 0 Median NaN NaN NaN 0 0 Median 1909200 1054700 854520 0 0 0 0 0 0 0 0 0 0 0 0 1909200 1054700 854520 0 0 0 28497 4235 29977 149542 150441 150441 1 RKDPELWGSVLLESNPYR NENSLFKSLSRYLVRRKDPELWGSVLLESN PELWGSVLLESNPYRRPLIDQVVQTALSET R R K Y R R 0 2 1 1 0 0 2 1 0 0 3 1 0 0 2 2 0 1 1 1 0 0 18 2 2158.1171 A0A087WVQ6;Q00610 A0A087WVQ6 954 971 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3;4 1.8194E-11 101.5 By MS/MS By matching By MS/MS 5 2 3 0.86063 0.94661 58.673 10 Median 1.0071 0.97154 54.745 5 2 Median 0.42637 0.47053 94.813 2 0 Median 0.87328 1.0469 12.648 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88682000 43678000 45004000 70710000 33107000 37603000 3926100 3098400 827690 14046000 7472900 6572800 0 0 0 0 0 0 0 0 0 28498 44 29978 149543;149544;149545;149546;149547;149548;149549;149550;149551;149552 150442;150443;150444;150445;150446;150447;150448;150449;150450;150451 150445 10 RKDSAIQQQVANLQMK DNIEGEWGAFNDIMRRKDSAIQQQVANLQM KDSAIQQQVANLQMKIVQEDRAVESRTTDL R R K M K I 2 1 1 1 0 4 0 0 0 1 1 2 1 0 0 1 0 0 0 1 0 0 16 2 1856.9891 Q14204 Q14204 1227 1242 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 1.7046E-10 113.59 By MS/MS By MS/MS By MS/MS 2 1 1 1.0452 1.2541 65.417 4 Median 0.59711 0.64043 86.043 2 0 Median NaN NaN NaN 0 0 Median 1.0103 1.3406 NaN 1 0 Median 1.2556 1.3365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64588000 34055000 30533000 17383000 11028000 6355100 0 0 0 44707000 21788000 22919000 2498800 1239800 1259000 0 0 0 0 0 0 28499 2865 29979 149553;149554;149555;149556 150452;150453;150454;150455;150456 150454 5 RKEDEVEEWQHR AEYTAKIALLEEARRRKEDEVEEWQHRAKE ARRRKEDEVEEWQHRAKEAQDDLVKTKEEL R R K H R A 0 2 0 1 0 1 4 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 12 2 1639.7703 P15311;E7EQR4 P15311 437 448 EZR Ezrin yes no 2;3;4 1.422E-06 116.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 7 1 1 1.1143 1.1515 16.557 18 Median 1.1024 1.1119 18.307 3 0 Plateau 1.1246 1.3051 11.581 4 0 Median 1.2784 1.4342 14.688 2 0 Median 1.0989 1.0922 10.394 7 0 Median 1.1171 1.3068 NaN 1 0 Median 1.2368 1.0721 NaN 1 0 Median 165990000 76007000 89987000 17981000 8312300 9669000 38547000 18595000 19952000 56179000 24582000 31598000 50206000 23109000 27097000 2670100 1215700 1454400 409160 192800 216370 28500 879 29980 149557;149558;149559;149560;149561;149562;149563;149564;149565;149566;149567;149568;149569;149570;149571;149572;149573;149574 150457;150458;150459;150460;150461;150462;150463;150464;150465;150466;150467;150468;150469;150470;150471;150472;150473;150474;150475;150476;150477;150478;150479;150480;150481;150482;150483;150484;150485;150486 150474 30 RKEEIEAQIK QAGVVTVSDVQELMRRKEEIEAQIKANYDV QELMRRKEEIEAQIKANYDVLESQKGIGMN R R K I K A 1 1 0 0 0 1 3 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 10 2 1242.6932 F5H5V4;F5GX23;J3KN29;O00233;F5H7X1 F5H5V4 29 38 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 3 0.0042862 40.496 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1314 1.133 8.6621 6 Median 1.1147 1.1707 1.4944 2 0 Median 1.1146 1.0601 6.2818 2 0 Median 1.1207 1.2547 NaN 1 0 Median 1.2256 1.011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9242300 4295600 4946700 3395500 1647400 1748100 4842700 2195700 2647000 807720 370250 437470 196340 82219 114120 0 0 0 0 0 0 28501 1003 29981 149575;149576;149577;149578;149579;149580 150487;150488 150488 2 RKEEPSSIFQR FKDHEEQDKVRPKAKRKEEPSSIFQRQRVD PKAKRKEEPSSIFQRQRVDALLLDLRQKFP K R K Q R Q 0 2 0 0 0 1 2 0 0 1 0 1 0 1 1 2 0 0 0 0 0 0 11 2 1375.7208 A0A087WYL7;G3V4A5;O75586 A0A087WYL7 164 174 MED6 Mediator of RNA polymerase II transcription subunit 6 yes no 3 0.010705 64.64 By MS/MS By MS/MS 1 1 0.76058 0.83363 5.9997 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74063 0.86976 NaN 1 0 Median 0.78107 0.79901 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3769800 1974200 1795600 0 0 0 0 0 0 1886400 1010600 875870 1883400 963630 919750 0 0 0 0 0 0 28502 82 29982 149581;149582 150489;150490 150489 2 RKEEQLSSYEDK ASSEQNKNHINNELKRKEEQLSSYEDKLFD ELKRKEEQLSSYEDKLFDVCGSQDFESDLD K R K D K L 0 1 0 1 0 1 3 0 0 0 1 2 0 0 0 2 0 0 1 0 0 0 12 2 1510.7264 Q92878;A0A1W2PQ90;A0A494C1B7;E7EN38 Q92878 617 628 RAD50 DNA repair protein RAD50 yes no 3 0.0020367 39.006 By MS/MS By matching 1 1 1.098 1.1666 3.8075 2 Median NaN NaN NaN 0 0 Median 1.1463 1.1356 NaN 1 0 Median 1.0518 1.1985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2265200 1111400 1153800 0 0 0 1794600 863260 931300 470620 248150 222470 0 0 0 0 0 0 0 0 0 28503 3561 29983 149583;149584 150491 150491 1 RKEFLSELQR GDSQPFSLQETYEAKRKEFLSELQRKEEEM TYEAKRKEFLSELQRKEEEMRQMFVNKVKE K R K Q R K 0 2 0 0 0 1 2 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 2 1304.7201 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 327 336 SEPT8 Septin-8 yes no 3 0.00024083 98.898 By MS/MS By MS/MS 1 2 1.0956 1.1672 19.536 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86637 1.014 NaN 1 0 Median 1.2553 1.3195 17.342 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23091000 9967600 13123000 0 0 0 0 0 0 7462100 3369800 4092300 15629000 6597900 9031200 0 0 0 0 0 0 28504 118 29984 149585;149586;149587 150492;150493;150494;150495 150495 4 RKEIDLLLGQTDDTR VLAVLKNEKLRDKERRKEIDLLLGQTDDTR RKEIDLLLGQTDDTRYHVLVNLGKKITDYG R R K T R Y 0 2 0 3 0 1 1 1 0 1 3 1 0 0 0 0 2 0 0 0 0 0 15 2 1771.9428 O75643;A0A494C1A5 O75643 154 168 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 8.2665E-05 71.08 By MS/MS 1 0.99687 1.1979 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99687 1.1979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13129000 6906100 6223300 0 0 0 0 0 0 13129000 6906100 6223300 0 0 0 0 0 0 0 0 0 28505 1688 29985 149588 150496 150496 1 RKELEQVCNPIISGLYQGAGGPGPGGFGAQGPK LDANTLAEKDEFEHKRKELEQVCNPIISGL AGGPGPGGFGAQGPKGGSGSGPTIEEVD__ K R K P K G 2 1 1 0 1 3 2 9 0 2 2 2 0 1 4 1 0 0 1 1 0 0 33 2 3338.683 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 597 629 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 4 9.2361E-06 43.992 By MS/MS 1 0.63578 0.68826 NaN 1 Median 0.63578 0.68826 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7525900 5044500 2481400 7525900 5044500 2481400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28506 278 29986 149589 150497 150497 1 RKELGPLPDDDDMASPK VYNDAHILEKLLKEKRKELGPLPDDDDMAS ELGPLPDDDDMASPKLKLSRKSGISPKKSK K R K P K L 1 1 0 4 0 0 1 1 0 0 2 2 1 0 3 1 0 0 0 0 0 0 17 2 1882.9095 Q86U86;E7EVG2;H0Y5B5 Q86U86 622 638 PBRM1 Protein polybromo-1 yes no 3 7.5609E-06 60.528 By MS/MS 1 0.48222 0.6371 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48222 0.6371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11059000 7928300 3130800 0 0 0 0 0 0 11059000 7928300 3130800 0 0 0 0 0 0 0 0 0 28507 3273 29987 149590 150498 150498 1 RKEQEHMINWVEK KNRLDYHISVQNMMRRKEQEHMINWVEKHV MRRKEQEHMINWVEKHVVQSISTQQEKETI R R K E K H 0 1 1 0 0 1 3 0 1 1 0 2 1 0 0 0 0 1 0 1 0 0 13 2 1725.8621 Q5QNZ2;P24539 Q5QNZ2 148 160 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3;4 0.0001271 73.91 By MS/MS By MS/MS 2 2 1.3856 1.3339 14.723 4 Median 1.1765 1.2552 20.578 2 0 Median 1.5531 1.3466 13.319 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27281000 12820000 14461000 13026000 6968300 6058200 14255000 5851300 8403300 0 0 0 0 0 0 0 0 0 0 0 0 28508 2124 29988 149591;149592;149593;149594 150499;150500;150501;150502;150503;150504 150504 6 RKEVTDEIVK LIEVLQPLIAEHQARRKEVTDEIVKEFMTP EHQARRKEVTDEIVKEFMTPRKLSFDFQ__ R R K V K E 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 0 1 0 0 2 0 0 10 2 1215.6823 P23381 P23381 449 458 WARS Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS yes yes 3 0.015401 28.956 By MS/MS By MS/MS 1 1 1.2347 1.3212 9.9093 2 Median 1.1024 1.2318 NaN 1 0 Median 1.383 1.4171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1121300 465210 656050 522340 237100 285240 598920 228110 370810 0 0 0 0 0 0 0 0 0 0 0 0 28509 2111 29989 149595;149596 150505;150506 150506 2 RKGDEVDGVDEVAK EALKKQLPGVKSEGKRKGDEVDGVDEVAKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K R K A K K 1 1 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 14 2 1515.7529 P09874 P09874 208 221 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.2646E-07 99.215 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 10 17 2 4 1.1097 1.1866 17.756 35 Median 0.95152 1.0815 11.237 2 0 Median NaN NaN NaN 0 0 Median 0.96324 1.1204 21.655 10 0 Median 1.1563 1.2679 17.236 17 0 Median 1.0433 1.2295 12.068 2 0 Median 1.1945 1.1577 16.662 4 0 Median 220280000 103070000 117210000 5471300 2490000 2981300 0 0 0 123460000 59825000 63636000 80388000 35839000 44550000 8674700 3993600 4681100 2282800 923260 1359500 28510 1922 29990 149597;149598;149599;149600;149601;149602;149603;149604;149605;149606;149607;149608;149609;149610;149611;149612;149613;149614;149615;149616;149617;149618;149619;149620;149621;149622;149623;149624;149625;149626;149627;149628;149629;149630;149631 150507;150508;150509;150510;150511;150512;150513;150514;150515;150516;150517;150518;150519;150520;150521;150522;150523;150524;150525;150526;150527;150528;150529;150530;150531;150532;150533;150534;150535;150536;150537;150538;150539;150540;150541;150542;150543 150512 37 RKGGPGSTLSFVGK RPDQSAAAAGPGDPKRKGGPGSTLSFVGKR KRKGGPGSTLSFVGKRRGGNKLALKTGIVA K R K G K R 0 1 0 0 0 0 0 4 0 0 1 2 0 1 1 2 1 0 0 1 0 0 14 2 1389.7728 Q9BQ61 Q9BQ61 105 118 C19orf43 Uncharacterized protein C19orf43 yes yes 3 0.016718 24.191 By matching By MS/MS 1 1 0.8273 0.79504 21.927 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82918 0.92837 NaN 1 0 Median 0.82543 0.68085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4331600 2531000 1800600 0 0 0 0 0 0 2752200 1582000 1170200 1579400 949010 630400 0 0 0 0 0 0 28511 3783 29991 149632;149633 150544 150544 1 RKGTDVNVFNTILTTR LADSDARALYEAGERRKGTDVNVFNTILTT KGTDVNVFNTILTTRSYPQLRRVFQKYTKY R R K T R S 0 2 2 1 0 0 0 1 0 1 1 1 0 1 0 0 4 0 0 2 0 0 16 2 1834.0061 P04083 P04083 213 228 ANXA1 Annexin A1 yes yes 3;4 2.3788E-05 76.391 By MS/MS By matching By matching By matching 3 2 1 1 1.3952 1.5916 18.041 7 Median 1.5093 1.7015 24.348 3 0 Median 1.3414 1.5293 14.24 2 0 Median NaN NaN NaN 0 0 Median 1.3209 1.1943 NaN 1 0 Median 1.3952 1.5916 NaN 1 0 Median NaN NaN NaN 0 0 Median 99451000 34884000 64568000 94590000 33043000 61548000 2612800 1133600 1479300 0 0 0 485220 194530 290690 1762600 512820 1249800 0 0 0 28512 1844 29992 149634;149635;149636;149637;149638;149639;149640 150545;150546;150547;150548 150545 4 RKLDAEDVIGSR VGEGKGTKAFKQPAKRKLDAEDVIGSRRQP PAKRKLDAEDVIGSRRQPRAPKEKAQPLED K R K S R R 1 2 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 2 1357.7314 P46013 P46013 2891 2902 MKI67 Antigen KI-67 yes yes 3 0.0004079 55.314 By MS/MS 2 1.6027 1.8168 63.677 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6027 1.8168 63.677 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7817300 2790800 5026500 0 0 0 0 0 0 7817300 2790800 5026500 0 0 0 0 0 0 0 0 0 28513 2335 29993 149641;149642 150549;150550 150549 2 RKLDGETTDLQDQIAELQAQIDELK LKKEEKTRQELEKAKRKLDGETTDLQDQIA QDQIAELQAQIDELKLQLAKKEEELQGALA K R K L K L 2 1 0 4 0 4 3 1 0 2 4 2 0 0 0 0 2 0 0 0 0 0 25 2 2869.4669 P35580 P35580 1058 1082 MYH10 Myosin-10 yes yes 4 2.2247E-17 69.435 By MS/MS 1 1.2542 1.4291 NaN 1 Median NaN NaN NaN 0 0 Median 1.2542 1.4291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2874200 1158900 1715400 0 0 0 2874200 1158900 1715400 0 0 0 0 0 0 0 0 0 0 0 0 28514 2245 29994 149643 150551;150552 150552 2 RKLDLFANVVHVK MEYKGELASYDMRLRRKLDLFANVVHVKSL LRRKLDLFANVVHVKSLPGYMTRHNNLDLV R R K V K S 1 1 1 1 0 0 0 0 1 0 2 2 0 1 0 0 0 0 0 3 0 0 13 2 1537.9093 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 134 146 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 3 0.036898 19.839 By MS/MS 1 1.0639 1.1264 NaN 1 Median 1.0639 1.1264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6937900 3037600 3900300 6937900 3037600 3900300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28515 96 29995 149644 150553 150553 1 RKLEGDSTDLSDQIAELQAQIAELK LRREEKQRQELEKTRRKLEGDSTDLSDQIA SDQIAELQAQIAELKMQLAKKEEELQAALA R R K L K M 3 1 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 25 2 2770.4349 P35579 P35579 1051 1075 MYH9 Myosin-9 yes yes 3;4 4.5808E-11 80.293 By MS/MS 2 1.0171 1.159 NaN 1 Median NaN NaN NaN 0 0 Median 1.0171 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47566000 21980000 25586000 0 0 0 47566000 21980000 25586000 0 0 0 0 0 0 0 0 0 0 0 0 28516 2244 29996 149645;149646 150554;150555 150555 2 RKLEHLITELVHQR VLADSVLMEQPPLRRRKLEHLITELVHQRD RRKLEHLITELVHQRDVTRSLIKSKIDNAK R R K Q R D 0 2 0 0 0 1 2 0 2 1 3 1 0 0 0 0 1 0 0 1 0 0 14 2 1771.0217 Q14204 Q14204 1806 1819 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 4 0.0003565 50.088 By MS/MS 1 0.96078 0.92649 NaN 1 Median NaN NaN NaN 0 0 Median 0.96078 0.92649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4805700 2012400 2793300 0 0 0 4805700 2012400 2793300 0 0 0 0 0 0 0 0 0 0 0 0 28517 2865 29997 149647 150556 150556 1 RKNQDEESQEAPELLK KQTKEALTRKQQKCRRKNQDEESQEAPELL KNQDEESQEAPELLKRPKEYTVRFTFPDPP R R K L K R 1 1 1 1 0 2 4 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 16 2 1912.949 Q8NE71;H0YGW7 Q8NE71 588 603 ABCF1 ATP-binding cassette sub-family F member 1 yes no 3 0.036516 14.959 By MS/MS By matching 1 1 0.96649 1.1501 4.8006 2 Median 0.97806 1.1117 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95507 1.1898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5473000 2555300 2917800 3520800 1743100 1777700 0 0 0 1952200 812130 1140100 0 0 0 0 0 0 0 0 0 28518 3427 29998 149648;149649 150557 150557 1 RKPDTIEVQQMK ILALCMGNHELYMRRRKPDTIEVQQMKAQA MRRRKPDTIEVQQMKAQAREEKHQKQMERA R R K M K A 0 1 0 1 0 2 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 0 12 2 1471.7817 P26038;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 295 306 MSN;EZR;RDX Moesin;Ezrin;Radixin no no 2;3 1.0293E-06 120.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 5 1 1 0.96904 1.0166 8.9454 18 Median 0.89392 0.98458 4.1597 3 0 Plateau 1.0189 1.0012 9.3954 5 0 Median 0.95495 1.0891 7.463 3 0 Median 0.98333 1.0467 11.2 5 0 Median 0.87584 1.0321 NaN 1 0 Median 1.0467 1.0738 NaN 1 0 Median 253130000 124970000 128160000 37271000 19205000 18066000 120050000 59173000 60875000 57046000 27466000 29580000 33936000 16592000 17345000 3191400 1753400 1438000 1632600 779900 852660 28519 2139;879;2235 29999 149650;149651;149652;149653;149654;149655;149656;149657;149658;149659;149660;149661;149662;149663;149664;149665;149666;149667 150558;150559;150560;150561;150562;150563;150564;150565;150566;150567;150568;150569;150570;150571;150572;150573;150574;150575;150576;150577;150578;150579;150580;150581;150582;150583;150584;150585;150586;150587 150576 30 RKPEDVLDDDDAGSAPLK EVLVLVTIIFIYEKRRKPEDVLDDDDAGSA EDVLDDDDAGSAPLKSSGQHQNDKGKNVRQ R R K L K S 2 1 0 5 0 0 1 1 0 0 2 2 0 0 2 1 0 0 0 1 0 0 18 2 1939.9487 P35613;A0A087WUV8 P35613 349 366 BSG Basigin yes no 3 1.753E-06 69.188 By MS/MS By MS/MS 1 2 0.92496 0.98829 32.423 3 Plateau 0.84218 0.94106 NaN 1 0 Median 0.68687 0.76018 42.412 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17177000 8820000 8356600 7357200 3835700 3521400 9819500 4984300 4835200 0 0 0 0 0 0 0 0 0 0 0 0 28520 2249 30000 149668;149669;149670 150588;150589;150590 150590 3 RKPFYPALIR QAPESVLAEHYQDLRRKPFYPALIRYMSSG YQDLRRKPFYPALIRYMSSGPVVAMVWEGY R R K I R Y 1 2 0 0 0 0 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 0 10 2 1259.7503 Q4TT34;F2Z2X0;O00746;H0Y6J0;A2IDC9 Q4TT34 98 107 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 0.0014037 74.127 By MS/MS By MS/MS By MS/MS 2 1 1 0.52083 0.60621 34.554 4 Median 0.50826 0.58941 3.4696 2 0 Median NaN NaN NaN 0 0 Median 0.52079 0.60838 NaN 1 0 Median 1.3687 1.1867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21908000 13930000 7978100 13148000 8582900 4564900 0 0 0 7316600 4831800 2484800 1444100 515690 928370 0 0 0 0 0 0 28521 992 30001 149671;149672;149673;149674 150591;150592;150593;150594;150595;150596 150593 6 RKPLFCGNSEADQLGK VDMWSVGCIFAEMFRRKPLFCGNSEADQLG KPLFCGNSEADQLGKIFDLIGLPPEDDWPR R R K G K I 1 1 1 1 1 1 1 2 0 0 2 2 0 1 1 1 0 0 0 0 0 0 16 2 1818.9047 P11802;F8VZZ0;F8VZ51 P11802 210 225 CDK4 Cyclin-dependent kinase 4 yes no 3 0.0030758 27.496 By MS/MS 1 1.1743 1.2251 NaN 1 Median NaN NaN NaN 0 0 Median 1.1743 1.2251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3767900 1496600 2271300 0 0 0 3767900 1496600 2271300 0 0 0 0 0 0 0 0 0 0 0 0 28522 1971 30002 149675 150597 150597 1 RKQEELQQLEQQR EEARRRQHEAEEGVRRKQEELQQLEQQRRQ VRRKQEELQQLEQQRRQQEELLAEENQRLR R R K Q R R 0 2 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1711.8965 Q15149;H0YDN1 Q15149 2705 2717 PLEC Plectin yes no 3;4 2.2141E-07 141.37 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1 2 1.2295 1.2678 11.176 9 Median 1.2252 1.182 NaN 1 0 Median 1.2496 1.307 20.435 2 0 Median 1.0726 1.2202 NaN 1 0 Median 1.376 1.3984 0.59456 2 1 Median 1.182 1.2972 NaN 1 0 Median 1.2922 1.1624 12.279 2 0 Median 60090000 26631000 33459000 9128500 4083400 5045100 30515000 13649000 16866000 7185900 3422900 3763000 6420800 2630000 3790800 3524900 1423800 2101000 3314700 1421700 1892900 28523 2933 30003 149676;149677;149678;149679;149680;149681;149682;149683;149684 150598;150599;150600;150601;150602;150603;150604;150605;150606;150607 150598 10 RKQYPISLVLAPTR GEALRAMKENGRYGRRKQYPISLVLAPTRE RRKQYPISLVLAPTRELAVQIYEEARKFSY R R K T R E 1 2 0 0 0 1 0 0 0 1 2 1 0 0 2 1 1 0 1 1 0 0 14 2 1640.9726 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 262 275 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 3 0.0098479 26.148 By matching By MS/MS By matching 1 2 2 0.89403 0.90253 36.228 5 Median 0.89403 0.90253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92791 1.0735 0.57853 2 0 Median 0.61554 0.53379 10.966 2 0 Median 15138000 8053300 7084300 1709500 811330 898150 0 0 0 0 0 0 0 0 0 11025000 5880000 5144900 2403200 1362100 1041200 28524 263 30004 149685;149686;149687;149688;149689 150608 150608 1 RKSDGIYIINLK GGTNLDFQMEQYIYKRKSDGIYIINLKRTW IYKRKSDGIYIINLKRTWEKLLLAARAIVA K R K L K R 0 1 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 12 2 1418.8245 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 41 52 RPSA 40S ribosomal protein SA yes no 3 0.00016166 77.124 By MS/MS By matching 2 1 1.0928 1.157 14.746 3 Median 0.96316 1.0315 16.235 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2105 1.2109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20840000 10283000 10557000 20020000 9942500 10077000 0 0 0 0 0 0 819840 340560 479280 0 0 0 0 0 0 28525 232 30005 149690;149691;149692 150609;150610 150609 2 RKTDFFIGGEEGMAEK GGVQELVNTFFSFLRRKTDFFIGGEEGMAE KTDFFIGGEEGMAEKLITQTFSHHNQLAQK R R K E K L 1 1 0 1 0 0 3 3 0 1 0 2 1 2 0 0 1 0 0 0 0 0 16 2 1813.8669 Q9Y266;A0A0A0MSU9 Q9Y266 38 53 NUDC Nuclear migration protein nudC yes no 3 0.00027196 41.695 By MS/MS By matching 1 1 1.0889 1.1206 16.542 2 Median 1.1898 1.2597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99661 0.99692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9623700 4759900 4863800 8448300 4078900 4369400 0 0 0 0 0 0 1175400 681070 494340 0 0 0 0 0 0 28526 4376 30006 149693;149694 150611 150611 1 RKTVTAMDVVYALK ENVIRDAVTYTEHAKRKTVTAMDVVYALKR KRKTVTAMDVVYALKRQGRTLYGFGG____ K R K L K R 2 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 14 2 1593.8912 P62805 P62805 79 92 HIST1H4A Histone H4 yes yes 3 0.00010098 74.769 By MS/MS By matching 3 2 1.0392 0.98477 32.4 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9825 1.0413 44.056 3 1 Median 1.2858 0.97714 1.1005 2 0 Median 48240000 24962000 23278000 0 0 0 0 0 0 0 0 0 0 0 0 34740000 19445000 15295000 13500000 5516900 7983500 28527 2597 30007;30008 149695;149696;149697;149698;149699 150612;150613;150614;150615 150613 1264 4 RKVDWLTEK ETLTITQAVIFINTRRKVDWLTEKMHARDF IFINTRRKVDWLTEKMHARDFTVSAMHGDM R R K E K M 0 1 0 1 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 9 2 1173.6506 P38919;I3L3H2;P60842;J3KT12;J3QS69;J3KSZ0;J3QL43;J3KTN0;J3QL52;Q14240;E7EQG2 P60842 283 291 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2;3 0.0022357 111.06 By MS/MS By MS/MS By MS/MS 2 1 2 1.123 1.2548 NaN 1 Median 1.123 1.2548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33577000 4717500 28860000 27950000 4717500 23233000 0 0 0 0 0 0 0 0 0 0 0 0 5626800 0 5626800 28528 2278;2529;2867 30009 149700;149701;149702;149703;149704 150616;150617;150618;150619;150620 150616 5 RKVPGEGLPLPK TIPVVFKDVIRPGMRRKVPGEGLPLPKTPE GMRRKVPGEGLPLPKTPEKRGDLIIEFEVI R R K P K T 0 1 0 0 0 0 1 2 0 0 2 2 0 0 3 0 0 0 0 1 0 0 12 2 1289.782 P25685 P25685 295 306 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 3 0.00020377 66.393 By MS/MS By MS/MS By MS/MS 1 1 2 0.67504 0.6987 3.0525 4 Median 0.63613 0.6735 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63615 0.7132 NaN 1 0 Median 0.77098 0.70032 3.2351 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8263200 4977000 3286200 1725700 1051400 674280 0 0 0 2841100 1723600 1117500 3696500 2202000 1494400 0 0 0 0 0 0 28529 2134 30010 149705;149706;149707;149708 150621;150622;150623;150624;150625;150626;150627;150628;150629 150628 9 RKYESVLQLGR DLELELQIELLRETKRKYESVLQLGRALTA RETKRKYESVLQLGRALTAHLYSLLQTQHA K R K G R A 0 2 0 0 0 1 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 11 2 1347.7623 A0A087X1E4;P53365;E9PRV8 A0A087X1E4 171 181 ARFIP2 Arfaptin-2 yes no 3 0.00016956 68.069 By MS/MS 1 1.1089 1.2501 NaN 1 Median 1.1089 1.2501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2488400 1264600 1223800 2488400 1264600 1223800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28530 119 30011 149709 150630;150631 150630 2 RLAAAEETAVSPR ALTLGLAKRVWSLERRLAAAEETAVSPRKS ERRLAAAEETAVSPRKSPRPAGPQLFLPDP R R L P R K 4 2 0 0 0 0 2 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 13 1 1369.7314 Q9BUH6 Q9BUH6 138 150 C9orf142 Protein PAXX yes yes 2 0.001772 56.936 By matching By MS/MS 1 1 0.87454 0.82065 28.701 2 Median NaN NaN NaN 0 0 Median 1.1837 1.0053 NaN 1 0 Median 0.64611 0.66991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3992600 2010700 1982000 0 0 0 618910 284910 334010 3373700 1725800 1648000 0 0 0 0 0 0 0 0 0 28531 3839 30012 149710;149711 150632 150632 1 RLAAEATEWQR KPENILLSVNEQYIRRLAAEATEWQRSGAP QYIRRLAAEATEWQRSGAPPPSGSAVSTAP R R L Q R S 3 2 0 0 0 1 2 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 11 1 1329.6789 H3BLV9;Q96SB4 H3BLV9 246 256 SRPK1 SRSF protein kinase 1 yes no 3 0.0033762 37.18 By MS/MS 1 1.1236 1.152 NaN 1 Median 1.1236 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1184900 480700 704220 1184900 480700 704220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28532 1207 30013 149712 150633 150633 1 RLAAQFIPK YQVILDGVKGGTKEKRLAAQFIPKFFKHFP GGTKEKRLAAQFIPKFFKHFPELADSAINA K R L P K F 2 1 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 9 1 1042.6287 G3V1C3;Q9BZZ5;E9PQK6 G3V1C3 43 51 API5 Apoptosis inhibitor 5 yes no 2 0.0020729 81.297 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 3 2 1.0697 0.98259 10.946 9 Median 0.97336 0.97711 NaN 1 0 Median 1.0077 0.92141 27.645 2 0 Median 0.9291 1.0458 NaN 1 0 Median 1.0697 1.0037 2.6542 3 0 Plateau NaN NaN NaN 0 0 Median 1.1396 1.0207 5.3782 2 0 Median 70644000 34017000 36626000 7443500 3683600 3759800 6564400 2946000 3618400 24237000 12376000 11861000 25250000 11915000 13335000 0 0 0 7148900 3095900 4052900 28533 1103 30014 149713;149714;149715;149716;149717;149718;149719;149720;149721 150634;150635;150636;150637;150638;150639;150640 150637 7 RLAAVALINAAIQK SGVDAANSAAQQYQRRLAAVALINAAIQKG RRLAAVALINAAIQKGVAEKTVLELMNPEA R R L Q K G 5 1 1 0 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 14 1 1450.8984 P46940;A0A0J9YXZ5 P46940 388 401 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 0.00053891 71.889 By MS/MS By matching 2 2 1.1778 1.1642 11.449 4 Median 1.1069 1.118 19.375 2 0 Median 1.1778 1.1642 1.1614 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11203000 4780200 6423100 10089000 4364200 5725200 1114000 416020 697940 0 0 0 0 0 0 0 0 0 0 0 0 28534 2350 30015 149722;149723;149724;149725 150641;150642;150643;150644 150643 4 RLAEDDKDGVMAHK NASKKQREKLLELIRRLAEDDKDGVMAHKV RRLAEDDKDGVMAHKVLNLLWNLAHSDDVP R R L H K V 2 1 0 3 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 1 0 0 14 2 1583.7726 Q93008;O00507 Q93008 493 506 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 4 0.027759 30.483 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 643190 0 643190 0 0 0 643190 0 643190 0 0 0 0 0 0 0 0 0 0 0 0 28535 3573 30016 149726 150645 150645 1 RLAEDEAFQR EIALKEKEAENERLRRLAEDEAFQRRRLEE NERLRRLAEDEAFQRRRLEEQAAQHKADIE R R L Q R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2005 2014 PLEC Plectin yes yes 2;3 0.00082389 68.893 By MS/MS By MS/MS 1 1 1.4216 1.3324 NaN 1 Median NaN NaN NaN 0 0 Median 1.4216 1.3324 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6661700 2960000 3701700 0 0 0 6661700 2960000 3701700 0 0 0 0 0 0 0 0 0 0 0 0 28536 2933 30017 149727;149728 150646;150647 150646 2 RLAELSDYR YKKAVAMSKRYGSDRRLAELSDYRRLSESQ RYGSDRRLAELSDYRRLSESQLSFRRSPTK R R L Y R R 1 2 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 9 1 1121.5829 Q96PK6 Q96PK6 607 615 RBM14 RNA-binding protein 14 yes yes 2 0.019634 45.081 By MS/MS 1 1.1968 1.3356 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1968 1.3356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3406900 1713600 1693400 0 0 0 0 0 0 3406900 1713600 1693400 0 0 0 0 0 0 0 0 0 28537 3712 30018 149729 150648 150648 1 RLAELSDYRR YKKAVAMSKRYGSDRRLAELSDYRRLSESQ YGSDRRLAELSDYRRLSESQLSFRRSPTKS R R L R R L 1 3 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 10 2 1277.684 Q96PK6 Q96PK6 607 616 RBM14 RNA-binding protein 14 yes yes 3 0.0011938 56.013 By matching By matching By MS/MS 1 1 1 1.2186 1.4088 9.0742 3 Median NaN NaN NaN 0 0 Median 1.4449 1.5337 NaN 1 0 Median 1.0765 1.2793 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2186 1.4088 NaN 1 0 Median NaN NaN NaN 0 0 Median 14766000 7291600 7474600 0 0 0 548690 173310 375380 1033100 555230 477890 0 0 0 13184000 6563000 6621300 0 0 0 28538 3712 30019 149730;149731;149732 150649;150650 150649 2 RLAGGDWFTSR HSPSDLEAHFVPLVKRLAGGDWFTSRTSAC PLVKRLAGGDWFTSRTSACGLFSVCYPRVS K R L S R T 1 2 0 1 0 0 0 2 0 0 1 0 0 1 0 1 1 1 0 0 0 0 11 1 1264.6313 P30153;C9J9C1 P30153 134 144 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 3 0.00011802 68.536 By MS/MS 1 1.1091 1.0927 NaN 1 Median 1.1091 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6101600 2641500 3460100 6101600 2641500 3460100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28539 2190 30020 149733 150651;150652 150652 2 RLAISEDHVASVK DEITVLKAALADVLRRLAISEDHVASVKKS LRRLAISEDHVASVKKSVSSKGQPSPRAVI R R L V K K 2 1 0 1 0 0 1 0 1 1 1 1 0 0 0 2 0 0 0 2 0 0 13 1 1423.7783 Q9HC35;B5MBZ0 Q9HC35 51 63 EML4 Echinoderm microtubule-associated protein-like 4 yes no 3 0.00048368 49.333 By MS/MS By matching 1 1 1.7499 1.7996 78.645 2 Median 1.0062 1.0319 NaN 1 0 Median 3.0431 3.1382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4337500 1618600 2718800 3085200 1333800 1751400 1252300 284860 967420 0 0 0 0 0 0 0 0 0 0 0 0 28540 4024 30021 149734;149735 150653;150654 150654 2 RLAPEYEAAATR LMLVEFFAPWCGHCKRLAPEYEAAATRLKG HCKRLAPEYEAAATRLKGIVPLAKVDCTAN K R L T R L 4 2 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 12 1 1346.6943 P30101;H7BZJ3 P30101 62 73 PDIA3 Protein disulfide-isomerase A3 no no 2;3 0.0001428 71.555 By MS/MS By MS/MS By MS/MS 3 2 2 1.0528 1.0099 6.068 7 Median 1.0347 1.0099 8.5987 3 0 Median 1.1406 1.0286 5.3369 2 0 Median NaN NaN NaN 0 0 Median 1.0814 0.995 3.7979 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22131000 10512000 11619000 14988000 7236200 7751900 5796100 2695000 3101200 0 0 0 1346300 580360 765960 0 0 0 0 0 0 28541 2189;1251 30022 149736;149737;149738;149739;149740;149741;149742 150655;150656;150657;150658;150659 150655 4 RLAPITSDPTEATAVGAVEASFK AEAAIYHLQLFEELRRLAPITSDPTEATAV PTEATAVGAVEASFKCCSGAIIVLTKSGRS R R L F K C 5 1 0 1 0 0 2 1 0 1 1 1 0 1 2 2 3 0 0 2 0 0 23 1 2330.2118 P14618;B4DNK4 P14618 400 422 PKM Pyruvate kinase PKM;Pyruvate kinase yes no 3 0.054448 6.7984 By MS/MS By matching 1 1 0.93182 0.90224 11.325 2 Median 0.97228 0.97746 NaN 1 0 Median 0.89305 0.8328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4804700 2834800 1969900 4518900 2665800 1853100 285810 169030 116780 0 0 0 0 0 0 0 0 0 0 0 0 28542 2005 30023 149743;149744 150660 150660 1 RLAQDGAHVVVSSR LVTASTDGIGFAIARRLAQDGAHVVVSSRK RRLAQDGAHVVVSSRKQQNVDQAVATLQGE R R L S R K 2 2 0 1 0 1 0 1 1 0 1 0 0 0 0 2 0 0 0 3 0 0 14 1 1493.8063 Q9BTZ2;F5GWZ1 Q9BTZ2 51 64 DHRS4 Dehydrogenase/reductase SDR family member 4 yes no 3 0.00073064 39.509 By MS/MS By MS/MS 2 2 0.99985 0.92577 27.831 3 Median 0.76621 0.82195 38.142 2 0 Median 1.0901 0.92577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9672800 4618700 5054100 7508200 3943600 3564600 2164700 675130 1489500 0 0 0 0 0 0 0 0 0 0 0 0 28543 3832 30024 149745;149746;149747;149748 150661;150662;150663;150664;150665;150666 150662 6 RLAQQMENRPSVQAALK ASMQQQQQLASARNRRLAQQMENRPSVQAA AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R R L L K L 3 2 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 17 2 1939.0422 X6R700;Q9Y3Y2;A0A087X1B7;Q5T7Y7 X6R700 29 45 CHTOP Chromatin target of PRMT1 protein yes no 3;4 0.00047384 37.177 By matching By MS/MS By MS/MS 3 4 3 0.84349 0.88039 22.021 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76377 0.87645 36.324 3 0 Median NaN NaN NaN 0 0 Median 0.79648 0.88039 3.2161 4 0 Median 1.0784 1.1506 20.711 3 0 Median 53323000 27146000 26177000 0 0 0 0 0 0 8994500 4875100 4119400 0 0 0 39889000 20282000 19607000 4439000 1988900 2450100 28544 4435 30025 149749;149750;149751;149752;149753;149754;149755;149756;149757;149758 150667;150668;150669;150670;150671;150672;150673;150674 150670 8 RLASSVLR ______________________________ ______________________________ K R L L R C 1 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 8 1 900.5505 J3QR09;J3KTE4;P84098 J3QR09 6 13 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2 0.0049516 93.429 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 3 2 3 3 2 1.2092 1.1962 15.088 16 Median 1.1177 1.0222 14.066 3 0 Median 1.107 0.94012 14.501 3 0 Median 1.1863 1.2373 4.6072 2 0 Median 1.3423 1.2019 10.314 3 0 Median 1.1869 1.2872 7.0636 3 0 Median 1.357 1.2436 7.6331 2 0 Median 49960000 22289000 27671000 18418000 8258700 10159000 10309000 4817200 5491500 5965900 2516200 3449700 1408700 553640 855090 12218000 5471100 6747200 1640700 672370 968300 28545 1335 30026 149759;149760;149761;149762;149763;149764;149765;149766;149767;149768;149769;149770;149771;149772;149773;149774 150675;150676;150677;150678;150679;150680;150681 150676 7 RLASTSDIEEKENR SKGTRLAYVAPTIPRRLASTSDIEEKENRD RRLASTSDIEEKENRDSSSLRTSSSYTRRK R R L N R D 1 2 1 1 0 0 3 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 14 2 1646.8224 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 504 517 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 0.0064363 27.58 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.92726 0.99872 10.752 5 Median 0.92726 0.99872 NaN 1 0 Median 1.1548 1.2525 NaN 1 0 Median 0.84321 0.97113 2.3839 2 0 Median 1.0286 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6827700 3505700 3322000 1443100 677140 765990 2707400 1342200 1365300 2211100 1244000 967120 466030 242460 223570 0 0 0 0 0 0 28546 1508 30027 149775;149776;149777;149778;149779 150682;150683;150684;150685 150685 4 RLATLLGLQAPPTR ARLLDMDGIIVEKQRRLATLLGLQAPPTRI RRLATLLGLQAPPTRIGLINDMVRFNVLQY R R L T R I 2 2 0 0 0 1 0 1 0 0 4 0 0 0 2 0 2 0 0 0 0 0 14 1 1505.9042 Q14152 Q14152 354 367 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 8.7493E-09 133.32 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 2 1 1 0.99201 0.95403 29.368 10 Median 0.79009 0.84492 25.666 3 0 Median 0.93072 0.93987 21.173 3 0 Median 1.3016 1.6133 22.043 2 0 Median 1.0573 0.95748 NaN 1 0 Median 0.87874 0.95059 NaN 1 0 Median NaN NaN NaN 0 0 Median 49775000 27111000 22664000 42174000 23404000 18770000 4057400 2195400 1862000 2449400 1001800 1447600 106790 52189 54600 987800 457680 530120 0 0 0 28547 2860 30028 149780;149781;149782;149783;149784;149785;149786;149787;149788;149789 150686;150687;150688;150689;150690;150691 150689 6 RLAVYQAGASEGAER KLPKRLLRDADDLKKRLAVYQAGASEGAER RLAVYQAGASEGAERSLSAIRERFGPLVEQ K R L E R S 4 2 0 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 15 1 1576.7958 CON__Q03247 CON__Q03247 175 189 yes yes 3 9.6668E-08 76.156 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 28548 767 30029 149790 150692 150692 1 RLCAAAASILGK DTNLPANRVPAGLEKRLCAAAASILGKPAD LEKRLCAAAASILGKPADRVNVTVRPGLAM K R L G K P 4 1 0 0 1 0 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1229.6914 P30046;J3KQ18;B5MC82;A6NHG4 P30046 22 33 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2;3 4.3766E-06 110.14 By MS/MS 2 1.4963 1.3211 11.323 2 Median NaN NaN NaN 0 0 Median 1.4963 1.3211 11.323 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39655000 16295000 23361000 0 0 0 39655000 16295000 23361000 0 0 0 0 0 0 0 0 0 0 0 0 28549 2182 30030 149791;149792 150693;150694;150695;150696 150693 4 RLCAAAASILGKPADR DTNLPANRVPAGLEKRLCAAAASILGKPAD LCAAAASILGKPADRVNVTVRPGLAMALSG K R L D R V 5 2 0 1 1 0 0 1 0 1 2 1 0 0 1 1 0 0 0 0 0 0 16 2 1668.9094 P30046;J3KQ18;B5MC82;A6NHG4 P30046 22 37 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 3 6.464E-07 87.429 By MS/MS By MS/MS By matching 1 1 1 1.043 1.0755 14.742 3 Median 1.044 1.1783 NaN 1 0 Median 1.043 1.0755 NaN 1 0 Median 0.75593 0.88306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41112000 19842000 21269000 3644400 1726400 1918000 36051000 17446000 18605000 1416300 669480 746850 0 0 0 0 0 0 0 0 0 28550 2182 30031 149793;149794;149795 150697;150698;150699 150699 3 RLDAAYR SIKYNIWCSTEHGNKRLDAAYRSMNGKGPV CSTEHGNKRLDAAYRSMNGKGPVYLLFSVN K R L Y R S 2 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 1 863.46135 Q9Y5A9;A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 Q9Y5A9 441 447 YTHDF2;YTHDF3 YTH domain-containing family protein 2;YTH domain-containing family protein 3 no no 2 0.056854 45.081 By matching By MS/MS 1 1 1.5797 1.4943 20.511 2 Median 1.3119 1.2926 NaN 1 0 Median 1.9021 1.7275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2509100 919570 1589500 847150 293150 553990 1662000 626420 1035500 0 0 0 0 0 0 0 0 0 0 0 0 28551 4454;6 30032 149796;149797 150700 150700 1 RLDDQESPVYAAQQR ______________________________ RLDDQESPVYAAQQRRIPGSTEAFPHQHRV R R L Q R R 2 2 0 2 0 3 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 15 1 1774.8598 Q96ST3;H3BP90;H3BNZ3;H3BT34;H3BQ76;H3BQ88;H3BNA0;H3BQL7;H3BMA2 Q96ST3 4 18 SIN3A Paired amphipathic helix protein Sin3a yes no 3 2.6915E-05 79.81 By MS/MS By MS/MS By MS/MS 1 1 1 0.76137 0.81421 1.3211 3 Median 0.76137 0.81421 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65504 0.79666 NaN 1 0 Median 0.90097 0.81588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10383000 5450800 4931700 1420100 843150 576930 0 0 0 6760900 3610200 3150700 2201600 997480 1204100 0 0 0 0 0 0 28552 3737 30033 149798;149799;149800 150701;150702;150703;150704 150703 3 RLDECEEAFQGTK TNSHDGLDGPTYKKRRLDECEEAFQGTKVF KRRLDECEEAFQGTKVFVMPNGMLKSNQQL R R L T K V 1 1 0 1 1 1 3 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 13 1 1581.7093 K9J957;P61289;K7ESG5;K7ENH2;B3KQ25;K7EMD0;K7EPX6;K7EKR3 K9J957 88 100 PSME3 Proteasome activator complex subunit 3 yes no 2 0.0013822 61.435 By MS/MS 1 1.0112 0.91747 NaN 1 Median NaN NaN NaN 0 0 Median 1.0112 0.91747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2013900 983640 1030200 0 0 0 2013900 983640 1030200 0 0 0 0 0 0 0 0 0 0 0 0 28553 1403 30034 149801 150705 150705 1 RLDEEEEDNEGGEWER KREDKAKKKHDRKSKRLDEEEEDNEGGEWE LDEEEEDNEGGEWERVRGGVPLVKEKPKMF K R L E R V 0 2 1 2 0 0 7 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 16 1 1990.8141 Q99613 Q99613 288 303 EIF3C Eukaryotic translation initiation factor 3 subunit C yes yes 3 1.3308E-10 105.39 By MS/MS By MS/MS 1 2 1.1409 1.0999 13.936 3 Median 0.81216 0.90233 NaN 1 0 Median 1.1668 1.1396 5.0136 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10130000 4961000 5169400 4722500 2628100 2094400 5407900 2332900 3075000 0 0 0 0 0 0 0 0 0 0 0 0 28554 3757 30035 149802;149803;149804 150706;150707;150708 150707 3 RLDEELEDAEK DLLNKMKKANEDELKRLDEELEDAEKNLGE DELKRLDEELEDAEKNLGESEIRDAMMAKA K R L E K N 1 1 0 2 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1345.6361 Q15008;C9J0E9;C9J7B7 Q15008 83 93 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 1.564E-05 125.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1273 1.1664 25.821 4 Linear 0.9221 0.98789 NaN 1 0 Median 1.1601 1.0949 NaN 1 0 Median 0.75683 0.86167 NaN 1 1 Median 0.69308 0.60585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31777000 15965000 15812000 5821900 3652900 2169100 11779000 5041000 6738200 11823000 6065200 5757300 2353100 1206200 1146900 0 0 0 0 0 0 28555 2911 30036 149805;149806;149807;149808 150709;150710;150711;150712;150713;150714 150710 6 RLDELEEATK ASSRHLRFKLQSLSRRLDELEEATKNLQKA QSLSRRLDELEEATKNLQKAEDELLDLQDK R R L T K N 1 1 0 1 0 0 3 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1202.6143 Q86V48;E5RFK8;E5RHU7 Q86V48 26 35 LUZP1 Leucine zipper protein 1 yes no 2 0.00048206 86.624 By MS/MS By MS/MS 1 5 0.88279 0.86659 13.236 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85182 0.86272 NaN 1 1 Median 0.91489 0.87049 14.756 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12304000 6163200 6140800 0 0 0 0 0 0 1201200 620860 580320 11103000 5542300 5560500 0 0 0 0 0 0 28556 3285 30037 149809;149810;149811;149812;149813;149814 150715;150716;150717;150718;150719;150720;150721;150722 150720 8 RLDGESSELQEQMVEQQQR RKEEKGRQELEKLKRRLDGESSELQEQMVE ESSELQEQMVEQQQRAEELRAQLGRKEEEL R R L Q R A 0 2 0 1 0 5 4 1 0 0 2 0 1 0 0 2 0 0 0 1 0 0 19 1 2289.0655 Q7Z406;A0A0C4DFM8 Q7Z406 1076 1094 MYH14 Myosin-14 yes no 3 1.2897E-19 156.13 By MS/MS By MS/MS 1 1 1.0843 1.1267 2.236 2 Median 1.0371 1.1091 NaN 1 0 Median 1.1336 1.1447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17514000 7634300 9879300 11055000 4697600 6357000 6459100 2936800 3522400 0 0 0 0 0 0 0 0 0 0 0 0 28557 3242 30038 149815;149816 150723;150724;150725;150726 150724 4 RLDIAGR ICPVYEGFSLPHLTRRLDIAGRDITRYLIK FSLPHLTRRLDIAGRDITRYLIKLLLLRGY R R L G R D 1 2 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 7 1 799.46644 P61160;F5H6T1 P61160 181 187 ACTR2 Actin-related protein 2 yes no 2 0.038018 52.716 By MS/MS By matching By matching 1 1 1 1.3335 1.2453 0.88134 3 Median NaN NaN NaN 0 0 Median 1.3335 1.2453 NaN 1 0 Median 1.2108 1.241 NaN 1 0 Median 1.4335 1.2619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7763300 3191900 4571400 0 0 0 5882200 2340800 3541400 1497100 697750 799330 383940 153270 230670 0 0 0 0 0 0 28558 2546 30039 149817;149818;149819 150727 150727 1 RLDIQEALK LLAFERKLDQTIMRKRLDIQEALKRPIKQK QTIMRKRLDIQEALKRPIKQKRKLRIFISN K R L L K R 1 1 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1084.6241 Q96GM5;F8VZ70;F8VUB0;F8VW95 Q96GM5 165 173 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.0066201 60.019 By MS/MS By matching 1 1 1.2334 1.2631 17.904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99582 1.1129 NaN 1 0 Median 1.5277 1.4335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6823100 2960800 3862300 0 0 0 0 0 0 4674300 2190700 2483600 2148800 770090 1378700 0 0 0 0 0 0 28559 3659 30040 149820;149821 150728 150728 1 RLDLDAAK DYKTIAKERKLLQNKRLDLDAAKTRLKKAK RKLLQNKRLDLDAAKTRLKKAKAAETRNSQ K R L A K T 2 1 0 2 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 900.50288 A0A087WW40;Q9Y371 A0A087WW40 169 176 SH3GLB1 Endophilin-B1 yes no 2 0.018279 54.157 By MS/MS 1 0.88756 0.83213 NaN 1 Median NaN NaN NaN 0 0 Median 0.88756 0.83213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3075900 1442700 1633200 0 0 0 3075900 1442700 1633200 0 0 0 0 0 0 0 0 0 0 0 0 28560 52 30041 149822 150729;150730 150729 2 RLDLPIER PLLLEEQGVVDYFLRRLDLPIERQPRKMLM VVDYFLRRLDLPIERQPRKMLMKWKEMADR R R L E R Q 0 2 0 1 0 0 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 8 1 1010.5873 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 P17812 269 276 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.0046366 99.802 By MS/MS By MS/MS By MS/MS 1 1 1 1.0127 0.94058 12.544 3 Median 0.95468 0.94058 NaN 1 0 Median 1.0127 0.91972 NaN 1 0 Median 1.0348 1.1548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65030000 32475000 32555000 39517000 20182000 19335000 16991000 8205300 8785700 8522700 4088300 4434400 0 0 0 0 0 0 0 0 0 28561 2046 30042 149823;149824;149825 150731;150732;150733;150734;150735;150736;150737 150732 7 RLDLVHTAALMLDK ISHDDLKGDPLLDQRRLDLVHTAALMLDKN RRLDLVHTAALMLDKNNLVKYDKKTGNFQV R R L D K N 2 1 0 2 0 0 0 0 1 0 4 1 1 0 0 0 1 0 0 1 0 0 14 1 1594.8865 O75643;A0A494C1A5 O75643 953 966 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.029995 17.219 By matching By matching By MS/MS 1 2 1 1.2064 1.2475 10.009 4 Median 1.1377 1.151 NaN 1 0 Median 1.3832 1.3314 12.604 2 0 Median 1.0742 1.2779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6343200 3005700 3337500 888790 525440 363350 3476600 1458800 2017800 1977800 1021400 956350 0 0 0 0 0 0 0 0 0 28562 1688 30043 149826;149827;149828;149829 150738;150739 150738 2 RLDLVHTAALMLDKNNLVK ISHDDLKGDPLLDQRRLDLVHTAALMLDKN VHTAALMLDKNNLVKYDKKTGNFQVTELGR R R L V K Y 2 1 2 2 0 0 0 0 1 0 5 2 1 0 0 0 1 0 0 2 0 0 19 2 2163.2198 O75643;A0A494C1A5 O75643 953 971 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.069605 8.4943 By matching By MS/MS 1 1 1.0223 1.2082 24.464 2 Median 0.96138 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0872 1.4364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5086200 2406900 2679300 2223300 1186400 1036900 0 0 0 2862800 1220500 1642300 0 0 0 0 0 0 0 0 0 28563 1688 30044 149830;149831 150740 150740 1 RLDPNKYPVPENWLHK VDLIQKHKSIEEIVRRLDPNKYPVPENWLH LDPNKYPVPENWLHKEAHQLFLEPEVLDPE R R L H K E 0 1 2 1 0 0 1 0 1 0 2 2 0 0 3 0 0 1 1 1 0 0 16 2 2005.0534 P39748;I3L3E9 P39748 262 277 FEN1 Flap endonuclease 1 yes no 3;4 5.7221E-06 84.046 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 4 2 2 0.61938 0.69289 13.992 14 Median 0.53637 0.58341 1.7515 2 0 Median NaN NaN NaN 0 0 Median 0.61938 0.70468 2.0374 4 0 Median 0.70088 0.70109 16.996 4 0 Median 0.59911 0.69179 16.948 2 0 Median 0.63968 0.59791 25.309 2 0 Median 230180000 136340000 93845000 18750000 11397000 7352900 0 0 0 122260000 73201000 49060000 79524000 46488000 33036000 6661400 3427100 3234300 2988000 1825600 1162400 28564 2283 30045 149832;149833;149834;149835;149836;149837;149838;149839;149840;149841;149842;149843;149844;149845 150741;150742;150743;150744;150745;150746;150747;150748;150749;150750;150751;150752;150753;150754;150755;150756;150757;150758;150759;150760;150761 150754 21 RLDQELDFILSQQK TSLHREVEKVKLDQKRLDQELDFILSQQKE KRLDQELDFILSQQKELEDLLSPLEELVKE K R L Q K E 0 1 0 2 0 3 1 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 14 1 1731.9155 P37198;M0QXN5 P37198 388 401 NUP62 Nuclear pore glycoprotein p62 yes no 2;3 1.1203E-08 109.24 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 4 4 1 3 1.2135 1.1653 20.204 15 Median 0.8816 0.89374 43.816 2 0 Median 1.2761 1.1682 6.0826 2 0 Median 0.99499 1.0868 4.5105 4 0 Median 1.429 1.3256 16.011 4 0 Median 1.1246 1.1653 NaN 1 0 Median 1.3637 1.2319 15.676 2 0 Median 53525000 26183000 27342000 3777200 1734700 2042500 8579200 3825000 4754200 33570000 17515000 16054000 3901300 1541500 2359700 1008400 524830 483540 2689200 1041200 1648000 28565 2267 30046 149846;149847;149848;149849;149850;149851;149852;149853;149854;149855;149856;149857;149858;149859;149860;149861 150762;150763;150764;150765;150766;150767;150768;150769;150770;150771;150772;150773;150774 150770 13 RLDQLER HVMRKEQRKEEKEKRRLDQLERKKETQRLL RKEEKEKRRLDQLERKKETQRLLEEEDSKL R R L E R K 0 2 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 928.50903 Q96CT7;M0R2F5 Q96CT7 60 66 CCDC124 Coiled-coil domain-containing protein 124 yes no 2 0.0040777 104.75 By matching By matching By MS/MS By MS/MS By matching By matching 1 1 4 2 1 1 0.98069 1.0279 21.735 10 Median 1.0424 1.1223 NaN 1 0 Median 1.0093 0.92897 NaN 1 0 Median 0.91424 0.97917 31.67 4 0 Median 1.1475 1.005 24.641 2 1 Median 0.89769 1.0088 NaN 1 0 Median 1.3344 1.1296 NaN 1 0 Median 19725000 9998200 9727300 1059100 523740 535320 599680 302830 296850 11263000 5505100 5757500 6043100 3312200 2731000 302020 164070 137950 459000 190290 268710 28566 3621 30047 149862;149863;149864;149865;149866;149867;149868;149869;149870;149871 150775;150776 150776 2 RLDSARPHFMSQF HTLLVTDTGCEILTRRLDSARPHFMSQF__ TRRLDSARPHFMSQF_______________ R R L Q F - 1 2 0 1 0 1 0 0 1 0 1 0 1 2 1 2 0 0 0 0 0 0 13 2 1590.7725 P53582;H0Y955;H0Y903 P53582 374 386 METAP1 Methionine aminopeptidase 1 yes no 3 0.00049558 54.343 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 2 1.1385 1.0331 11.426 10 Median NaN NaN NaN 0 0 Median 1.0337 0.96533 NaN 1 0 Median 1.0689 1.0955 11.074 2 0 Median 1.1213 1.0536 3.414 3 0 Plateau 0.97824 1.049 24.073 2 0 Median 1.3491 1.1897 3.8635 2 0 Median 99361000 45539000 53822000 0 0 0 283430 145370 138060 54779000 25848000 28931000 21196000 8914200 12282000 21267000 9805700 11461000 1835700 826060 1009600 28567 2468 30048;30049 149872;149873;149874;149875;149876;149877;149878;149879;149880;149881 150777;150778;150779;150780;150781;150782;150783 150779 1160 7 RLDTDLAR QLAMQTYEMVDKHIRRLDTDLARFEADLKE MVDKHIRRLDTDLARFEADLKEKQIESSDY R R L A R F 1 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 1 958.51959 Q9UNL4 Q9UNL4 99 106 ING4 Inhibitor of growth protein 4 yes yes 2 0.0022938 91.318 By MS/MS 1 1.0443 1.1326 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0443 1.1326 NaN 1 1 Median NaN NaN NaN 0 0 Median 3817900 1895600 1922300 0 0 0 0 0 0 0 0 0 0 0 0 3817900 1895600 1922300 0 0 0 28568 4344 30050 149882 150784 150784 1 RLDVFEK DHKYKQAIGIALETRRLDVFEKTILESNDV IGIALETRRLDVFEKTILESNDVPGMLAYS R R L E K T 0 1 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 1 905.49707 A0A087WW66;Q99460;H7BZR6;C9J9M4 A0A087WW66 159 165 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.0079062 96.492 By MS/MS By MS/MS 2 1 1.1899 1.088 17.349 3 Median 1.0386 1.0724 24.507 2 0 Median 1.1899 1.088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48574000 22335000 26239000 8576300 4238500 4337800 39997000 18096000 21901000 0 0 0 0 0 0 0 0 0 0 0 0 28569 54 30051 149883;149884;149885 150785;150786;150787;150788 150788 4 RLDVTVQSFGWSDR ALSCEYECRRRMLMKRLDVTVQSFGWSDRA KRLDVTVQSFGWSDRAKVKTDDIARIYQPK K R L D R A 0 2 0 2 0 1 0 1 0 0 1 0 0 1 0 2 1 1 0 2 0 0 14 1 1664.8271 Q8NCA5;E9PH82;Q52LJ0 Q52LJ0 228 241 FAM98A;FAM98B Protein FAM98A;Protein FAM98B no no 2;3 0.00033421 69.979 By MS/MS By matching By matching By matching 3 1 1 1 1.0838 1.1551 9.5136 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0487 1.1327 2.8434 3 1 Median 1.3461 1.2556 NaN 1 0 Median 1.1326 1.2021 NaN 1 0 Median 1.0795 0.9544 NaN 1 0 Median 17600000 8367200 9233000 0 0 0 0 0 0 15735000 7539900 8195100 596350 256700 339650 1143100 515690 627380 125870 54950 70917 28570 3025;3417 30052 149886;149887;149888;149889;149890;149891 150789;150790;150791;150792 150791 4 RLDYESQTAHDNLLTEQIHSLSIEAK VKQLEMNLAEAERQRRLDYESQTAHDNLLT NLLTEQIHSLSIEAKSKDVKIEVLQNELDD R R L A K S 2 1 1 2 0 2 3 0 2 2 4 1 0 0 0 3 2 0 1 0 0 0 26 1 3010.4996 Q14789;E7EU81;H0Y867 Q14789 781 806 GOLGB1 Golgin subfamily B member 1 yes no 4 2.0184E-19 65.428 By MS/MS 1 1.1401 1.0611 NaN 1 Median NaN NaN NaN 0 0 Median 1.1401 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5918800 2496400 3422400 0 0 0 5918800 2496400 3422400 0 0 0 0 0 0 0 0 0 0 0 0 28571 2900 30053 149892 150793 150793 1 RLDYITAEIK LVKQELGEARATVGKRLDYITAEIKRYESQ ATVGKRLDYITAEIKRYESQLRDLERQSEQ K R L I K R 1 1 0 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1220.6765 O15212 O15212 79 88 PFDN6 Prefoldin subunit 6 yes yes 2 0.00056943 77.677 By MS/MS By MS/MS By matching 1 1 1 0.93308 0.91497 6.1525 3 Median 0.93308 0.91497 NaN 1 0 Median 1.1202 0.98904 NaN 1 0 Median 0.83815 0.87593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16688000 8383700 8304500 8681600 4866000 3815600 6257200 2484300 3772900 1749300 1033400 715870 0 0 0 0 0 0 0 0 0 28572 1530 30054 149893;149894;149895 150794;150795 150795 2 RLDYITAEIKR LVKQELGEARATVGKRLDYITAEIKRYESQ TVGKRLDYITAEIKRYESQLRDLERQSEQQ K R L K R Y 1 2 0 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 1 0 0 0 11 2 1376.7776 O15212 O15212 79 89 PFDN6 Prefoldin subunit 6 yes yes 3 4.9524E-05 93.959 By MS/MS By MS/MS By MS/MS 1 1 1 1.1112 1.2637 7.1328 3 Median 1.1196 1.2637 NaN 1 0 Median 1.1001 1.1344 NaN 1 0 Median 1.1112 1.2981 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39584000 17455000 22130000 18736000 8463700 10272000 15971000 7143700 8827400 4877700 1847200 3030500 0 0 0 0 0 0 0 0 0 28573 1530 30055 149896;149897;149898 150796;150797;150798;150799 150797 4 RLEAAYLDLQR EILQESRMMIPDCQRRLEAAYLDLQRILEN DCQRRLEAAYLDLQRILENEKDLEEAEEYK R R L Q R I 2 2 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 11 1 1346.7306 E5RIW3;E5RJD8;O75347;E5RHG6 E5RIW3 46 56 TBCA Tubulin-specific chaperone A yes no 2;3 4.4914E-40 217.14 By MS/MS By MS/MS By MS/MS 4 3 2 1.2409 1.1928 7.2254 9 Median 1.2134 1.2409 6.9888 4 0 Median 1.3746 1.1928 7.8838 3 0 Median 1.1584 1.258 8.2377 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 637570000 278840000 358730000 354780000 157700000 197080000 240600000 101930000 138670000 42194000 19207000 22987000 0 0 0 0 0 0 0 0 0 28574 852 30056 149899;149900;149901;149902;149903;149904;149905;149906;149907 150800;150801;150802;150803;150804;150805;150806;150807;150808;150809;150810;150811;150812;150813;150814;150815;150816;150817;150818 150801 19 RLEAELAAHEPAIQGVLDTGK GRDLTGVQNLRKKHKRLEAELAAHEPAIQG AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ K R L G K K 4 1 0 1 0 1 3 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 21 1 2217.1753 A0A0D9SF54;Q13813 Q13813 1808 1828 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 7.684E-12 63.359 By MS/MS By matching 1 1 0.75703 0.8143 2.8165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6931 0.83068 NaN 1 0 Median 0.82686 0.79824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15333000 8885200 6447400 0 0 0 0 0 0 14911000 8666700 6244600 421280 218530 202740 0 0 0 0 0 0 28575 264;2838 30057 149908;149909 150819;150820 150820 2 RLEAELAAHEPAIQGVLDTGKK GRDLTGVQNLRKKHKRLEAELAAHEPAIQG AHEPAIQGVLDTGKKLSDDNTIGKEEIQQR K R L K K L 4 1 0 1 0 1 3 2 1 1 3 2 0 0 1 0 1 0 0 1 0 0 22 2 2345.2703 A0A0D9SF54;Q13813 Q13813 1808 1829 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 1.6416E-26 125.04 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 3 1 1 1.0245 1.0915 29.896 11 Median 1.1388 1.2214 12.693 4 1 Median 1.1848 1.2173 15.421 2 0 Median 0.75469 0.99862 31.352 3 0 Plateau 0.86275 0.96567 NaN 1 0 Median 1.0062 1.1828 NaN 1 0 Median NaN NaN NaN 0 0 Median 159180000 80695000 78489000 37408000 17521000 19886000 30460000 13736000 16724000 88254000 48085000 40169000 1561600 778590 783030 1501000 573920 927110 0 0 0 28576 264;2838 30058 149910;149911;149912;149913;149914;149915;149916;149917;149918;149919;149920 150821;150822;150823;150824;150825;150826;150827;150828;150829;150830;150831;150832;150833 150826 13 RLEAFEHPNVVR GGLPISTVREVALLRRLEAFEHPNVVRLMD LLRRLEAFEHPNVVRLMDVCATSRTDREIK R R L V R L 1 2 1 0 0 0 2 0 1 0 1 0 0 1 1 0 0 0 0 2 0 0 12 1 1465.779 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8;F8VYY1 P11802 62 73 CDK4 Cyclin-dependent kinase 4 yes no 3 1.3334E-06 98.407 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.99433 1 38.047 5 Median 0.92888 1 NaN 1 0 Median 0.99433 0.91523 NaN 1 0 Median 0.96319 1.0053 NaN 1 0 Median 1.0444 0.97465 NaN 1 0 Median 2.126 2.2692 NaN 1 0 Median NaN NaN NaN 0 0 Median 80738000 39448000 41290000 27190000 13926000 13265000 28642000 13822000 14820000 15989000 7724600 8264800 6633600 3357100 3276500 2282300 618520 1663800 0 0 0 28577 1971 30059 149921;149922;149923;149924;149925 150834;150835;150836;150837;150838;150839;150840 150837 7 RLEAFLTQK QKKLEELELDEQQRKRLEAFLTQKQKVGEL DEQQRKRLEAFLTQKQKVGELKDDDFEKIS K R L Q K Q 1 1 0 0 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 9 1 1104.6291 P36507;A0A1B0GUL7;Q02750 Q02750 49 57 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 2 0.0013831 87.639 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 2 4 1.1128 1.1305 49.011 19 Median 1.0159 1.0666 54.842 4 0 Median 1.1562 1.093 28.781 3 0 Median 1.0682 1.2164 1.8858 3 0 Plateau 1.3865 1.2753 37.595 3 0 Plateau 3.2354 3.4373 7.2494 2 0 Median 1.1535 0.96985 15.71 4 0 Median 106210000 48629000 57582000 34785000 18227000 16558000 17762000 8007700 9754100 19149000 8759400 10390000 4184200 1793700 2390500 9949100 2530800 7418300 20381000 9310100 11071000 28578 2256;2700 30060 149926;149927;149928;149929;149930;149931;149932;149933;149934;149935;149936;149937;149938;149939;149940;149941;149942;149943;149944 150841;150842;150843;150844;150845;150846;150847;150848;150849;150850 150843 10 RLEAGAMVLADR GLTAAVTTDQETGERRLEAGAMVLADRGVV GERRLEAGAMVLADRGVVCIDEFDKMSDMD R R L D R G 3 2 0 1 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 12 1 1300.6922 P25205;J3KQ69;A0A499FHX9 P25205 392 403 MCM3 DNA replication licensing factor MCM3 yes no 2;3 2.0538E-21 196.24 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.9022 1.0024 14.905 6 Median 0.9022 1.0024 3.2415 2 0 Median 1.3218 1.3077 NaN 1 1 Median 0.82321 0.9512 18.421 2 1 Median NaN NaN NaN 0 0 Median 0.88114 0.95738 NaN 1 0 Median NaN NaN NaN 0 0 Median 98261000 49504000 48756000 57044000 29438000 27606000 9037100 3411300 5625800 30180000 15754000 14426000 0 0 0 1999600 900410 1099200 0 0 0 28579 2129 30061 149945;149946;149947;149948;149949;149950;149951 150851;150852;150853;150854;150855;150856;150857;150858;150859 150854 9 RLEALAAEFSSNWQK QAEQRVMSRVHSLERRLEALAAEFSSNWQK RLEALAAEFSSNWQKEAMRLERLELRQGAP R R L Q K E 3 1 1 0 0 1 2 0 0 0 2 1 0 1 0 2 0 1 0 0 0 0 15 1 1748.8846 Q9UH99 Q9UH99 286 300 SUN2 SUN domain-containing protein 2 yes yes 3 0.025151 17.281 By MS/MS By matching 1 1 0.60686 0.65802 42.214 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83591 0.8869 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44057 0.48821 NaN 1 0 Median NaN NaN NaN 0 0 Median 6940300 4049400 2891000 0 0 0 0 0 0 4864000 2569900 2294100 0 0 0 2076300 1479400 596890 0 0 0 28580 4271 30062 149952;149953 150860 150860 1 RLEAVLASR EREPGAAGVRRALGRRLEAVLASRSEANAV RRALGRRLEAVLASRSEANAVFDILAVLQS R R L S R S 2 2 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 1 1013.5982 Q9BVI4 Q9BVI4 17 25 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0016412 84.658 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 2 1.2495 1.244 30.387 8 Median NaN NaN NaN 0 0 Median 1.4022 1.2645 NaN 1 0 Median 1.1581 1.2509 NaN 1 0 Median 1.3447 1.2372 NaN 1 0 Median 1.161 1.2597 49.197 3 0 Median 1.2535 1.1053 11.745 2 0 Median 41006000 19412000 21595000 0 0 0 2248000 975110 1272900 2893200 1388900 1504300 2371700 1038300 1333500 21296000 10572000 10724000 12197000 5437700 6759700 28581 3854 30063 149954;149955;149956;149957;149958;149959;149960;149961 150861;150862;150863;150864;150865;150866;150867;150868;150869 150863 9 RLEDQLAGLQQELAALALK MTQESFQESSVKELRRLEDQLAGLQQELAA QLAGLQQELAALALKQSSVAEEVGLLPQQI R R L L K Q 4 1 0 1 0 3 2 1 0 0 6 1 0 0 0 0 0 0 0 0 0 0 19 1 2079.1688 Q9UH99 Q9UH99 413 431 SUN2 SUN domain-containing protein 2 yes yes 3 0.019098 15.09 By MS/MS 1 0.75365 0.83901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75365 0.83901 NaN 1 0 Median NaN NaN NaN 0 0 Median 581370 324510 256860 0 0 0 0 0 0 0 0 0 0 0 0 581370 324510 256860 0 0 0 28582 4271 30064 149962 150870;150871 150871 2 RLEEAALR EKERIMNEEDPEKQRRLEEAALRREQKKLE EDPEKQRRLEEAALRREQKKLEKKQMKMKQ R R L L R R 2 2 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 956.54033 Q96A33;A0A087WYW6 Q96A33 455 462 CCDC47 Coiled-coil domain-containing protein 47 yes no 2 0.0046077 100.02 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.168 1.1456 6.1434 7 Median 1.1265 1.1236 6.8692 2 0 Median 1.2265 1.11 7.0736 2 0 Median 1.0607 1.1456 NaN 1 0 Median 1.3705 1.261 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2515 1.1064 NaN 1 0 Median 16518000 6900600 9617300 3270200 1458400 1811900 11680000 4751700 6928200 583080 274390 308690 464740 182400 282340 0 0 0 519930 233700 286230 28583 3592 30065 149963;149964;149965;149966;149967;149968;149969 150872;150873;150874;150875;150876;150877 150877 6 RLEEEEAAAEKEDR MKKLERQRAQEEQAKRLEEEEAAAEKEDRG KRLEEEEAAAEKEDRGRPYTLSVALPGSIL K R L D R G 3 2 0 1 0 0 6 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 14 2 1673.7857 Q5T280 Q5T280 56 69 C9orf114 Putative methyltransferase C9orf114 yes yes 3 0.00023339 63.128 By MS/MS By matching 2 1 1.3519 1.5822 67.2 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.393 1.7069 10.722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50325 0.53695 NaN 1 0 Median 4216800 2027700 2189100 0 0 0 0 0 0 3850200 1771700 2078500 0 0 0 0 0 0 366580 255960 110620 28584 3083 30066 149970;149971;149972 150878 150878 1 RLEEELR LRSEESVSRLPEEIRRLEEELRQLKSDSHG SRLPEEIRRLEEELRQLKSDSHGPKEDGGF R R L L R Q 0 2 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 943.50869 Q07065 Q07065 372 378 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0055026 102.51 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1 1.5202 1.4327 18.025 7 Median 1.0845 1.0685 NaN 1 0 Median 1.5202 1.401 1.8637 3 0 Median 1.3995 1.5617 NaN 1 1 Median 1.9075 1.7773 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0633 1.8241 NaN 1 0 Median 54863000 24028000 30835000 12938000 6376500 6561200 34283000 14742000 19540000 5775600 2362600 3413000 565920 158980 406950 0 0 0 1300800 387670 913150 28585 2730 30067 149973;149974;149975;149976;149977;149978;149979 150879;150880;150881;150882;150883;150884 150880 6 RLEEESAQLK LMTKQKLIDAEEEKRRLEEESAQLKEMCRR EEEKRRLEEESAQLKEMCRRELDKAESEIK R R L L K E 1 1 0 0 0 1 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1201.6303 Q9Y3P9 Q9Y3P9 904 913 RABGAP1 Rab GTPase-activating protein 1 yes yes 2 0.0054008 55.461 By MS/MS 1 1.1915 1.1324 NaN 1 Median NaN NaN NaN 0 0 Median 1.1915 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1643100 728230 914830 0 0 0 1643100 728230 914830 0 0 0 0 0 0 0 0 0 0 0 0 28586 4432 30068 149980 150885 150885 1 RLEEETEYLNSQLEDAIR RQNQVEFEGLKHEIKRLEEETEYLNSQLED EETEYLNSQLEDAIRLKEISERQLEEALET K R L I R L 1 2 1 1 0 1 5 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 18 1 2207.0706 Q8TD16 Q8TD16 214 231 BICD2 Protein bicaudal D homolog 2 yes yes 3 8.6336E-06 49.993 By MS/MS 1 0.84643 0.83744 NaN 1 Median NaN NaN NaN 0 0 Median 0.84643 0.83744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1295800 745800 550000 0 0 0 1295800 745800 550000 0 0 0 0 0 0 0 0 0 0 0 0 28587 3468 30069 149981 150886 150886 1 RLEEFEGERER QIQEAKTMVEEDLQRRLEEFEGERERLQRM DLQRRLEEFEGERERLQRMADSAASLEQQL R R L E R L 0 3 0 0 0 0 5 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 11 2 1448.7008 Q08378 Q08378 673 683 GOLGA3 Golgin subfamily A member 3 yes yes 3 0.045784 19.099 By MS/MS 1 1.138 1.2684 NaN 1 Median 1.138 1.2684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1935600 819900 1115700 1935600 819900 1115700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28588 2738 30070 149982 150887 150887 1 RLEEIPLIK LKNQEKKIDYFERAKRLEEIPLIKSAYEEQ YFERAKRLEEIPLIKSAYEEQRIKDMDLWE K R L I K S 0 1 0 0 0 0 2 0 0 2 2 1 0 0 1 0 0 0 0 0 0 0 9 1 1109.6808 Q14152 Q14152 703 711 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0009981 103.56 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 1 2 0.90775 0.87633 14.635 7 Median 0.94368 0.96084 18.46 2 0 Median 0.94801 0.88452 NaN 1 0 Median 0.98831 1.1194 NaN 1 0 Median 0.90775 0.87633 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88639 0.78529 1.5267 2 0 Median 76445000 40173000 36272000 48943000 26347000 22596000 20425000 10396000 10029000 5486900 2542200 2944700 1076500 582820 493660 0 0 0 514480 305550 208930 28589 2860 30071 149983;149984;149985;149986;149987;149988;149989 150888;150889;150890;150891;150892;150893;150894 150890 7 RLEELEAK EEEERQKREEEERIKRLEELEAKRKEEERL EEEERIKRLEELEAKRKEEERLEQEKRERK K R L A K R 1 1 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 986.53966 A0A087WUT6;O60841 A0A087WUT6 368 375 EIF5B Eukaryotic translation initiation factor 5B yes no 2 0.0092652 70.912 By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1.2754 1.1882 36.656 7 Median NaN NaN NaN 0 0 Median 1.2754 1.1882 NaN 1 0 Median 1.3549 1.5439 NaN 1 0 Median 0.7672 0.72764 51.45 2 0 Median NaN NaN NaN 0 0 Median 1.4685 1.2945 20.125 3 0 Median 15933000 7129200 8804200 0 0 0 8572700 3907700 4665000 1963000 883680 1079300 2826400 1298100 1528300 0 0 0 2571300 1039700 1531600 28590 35 30072 149990;149991;149992;149993;149994;149995;149996 150895;150896;150897 150895 3 RLEELLR KMTDVFEGSIIRCMRRLEELLRQMCQAAKA GSIIRCMRRLEELLRQMCQAAKAIGNTELE R R L L R Q 0 2 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 1 927.55016 P42285;H0YAC4 P42285 999 1005 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes no 2 0.014585 82.452 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.2795 1.2558 24.903 6 Median NaN NaN NaN 0 0 Median 1.0818 1.0087 37.114 2 0 Median 1.2795 1.5168 6.3119 2 0 Median 1.2284 1.2026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3266 1.1817 NaN 1 0 Median 38588000 16673000 21916000 0 0 0 19573000 8101400 11472000 10782000 4972500 5809200 6539900 2895400 3644400 0 0 0 1693500 703290 990190 28591 2309 30073 149997;149998;149999;150000;150001;150002 150898;150899 150899 2 RLEEPEEPK EKERQQKKRQEEIKKRLEEPEEPKVLTPEE QEEIKKRLEEPEEPKVLTPEEQLADKLRLK K R L P K V 0 1 0 0 0 0 4 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 9 1 1125.5666 O75822 O75822 98 106 EIF3J Eukaryotic translation initiation factor 3 subunit J yes yes 2 0.066188 31.934 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.72888 0.68061 10.769 4 Median 0.68329 0.67317 NaN 1 0 Median 0.74724 0.68814 NaN 1 0 Median 0.75819 0.83919 NaN 1 0 Median 0.71098 0.67096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3032900 1671000 1361900 770920 421450 349470 760940 415700 345240 641110 348700 292420 859930 485140 374790 0 0 0 0 0 0 28592 1698 30074 150003;150004;150005;150006 150900;150901;150902 150900 3 RLEEQAAQHKADIEER ERLRRLAEDEAFQRRRLEEQAAQHKADIEE LEEQAAQHKADIEERLAQLRKASDSELERQ R R L E R L 3 2 0 1 0 2 4 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 16 2 1921.9606 Q15149 Q15149 2016 2031 PLEC Plectin yes yes 4 0.00022577 42.813 By MS/MS By matching 1 1 0.97646 1.023 6.4268 2 Median 1.0133 0.9775 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94098 1.0705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2369500 1176900 1192600 2069400 1090900 978490 0 0 0 300090 85951 214140 0 0 0 0 0 0 0 0 0 28593 2933 30075 150007;150008 150903;150904 150904 2 RLEESDVLQEAR KEMKESIKKFRDEARRLEESDVLQEARRKY EARRLEESDVLQEARRKYKTIESETVRTSE R R L A R R 1 2 0 1 0 1 3 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1443.7318 O43615;M0QXU7;M0R301;M0R124 O43615 90 101 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2;3 1.3081E-06 98.902 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 0.97421 0.95298 95.024 6 Median 0.79811 0.83975 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1766 1.206 NaN 1 0 Median 0.44721 0.39367 182.53 2 1 Median 0.83559 0.89759 NaN 1 0 Median 1.1358 1.0118 NaN 1 1 Median 23680000 12921000 10759000 4058200 2389300 1668900 0 0 0 10199000 4663800 5535200 4407700 3222900 1184800 4337700 2357100 1980500 677010 287640 389370 28594 1577 30076 150009;150010;150011;150012;150013;150014 150905;150906;150907;150908;150909;150910 150907 4 RLEEVLAIR KNEKYFPETLDKLGKRLEEVLAIRTIHEKF LDKLGKRLEEVLAIRTIHEKFLYFLPASEE K R L I R T 1 2 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 1 1097.6557 Q8NCM8;A0A3B3ISP9;A0A3B3IT36 Q8NCM8 330 338 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 0.002151 80.688 By matching By MS/MS 1 2 1.3424 1.3556 24.884 3 Median 0.82657 0.89824 NaN 1 0 Median 1.4191 1.3806 2.5841 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12522000 6065800 6456200 7525000 4073800 3451200 4997100 1992000 3005100 0 0 0 0 0 0 0 0 0 0 0 0 28595 3418 30077 150015;150016;150017 150911 150911 1 RLEEWLGR QSSQHLFLDLPKLEKRLEEWLGRTLPGSDW DLPKLEKRLEEWLGRTLPGSDWTPNAQFIT K R L G R T 0 2 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 1 1057.5669 P56192 P56192 460 467 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 0.0038207 126.62 By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 0.78449 1.1787 25.304 6 Linear 1.0216 1.1351 NaN 1 0 Median 0.84146 0.72323 27.434 3 1 Median NaN NaN NaN 0 0 Median 0.65008 0.63642 NaN 1 1 Median 0.73138 0.82194 NaN 1 0 Median NaN NaN NaN 0 0 Median 48911000 25739000 23172000 19128000 9945800 9182600 21419000 10997000 10423000 0 0 0 1972600 1076000 896560 6390600 3720800 2669800 0 0 0 28596 2508 30078 150018;150019;150020;150021;150022;150023 150912;150913;150914;150915 150912 4 RLEFENQK FEEEKVKRQNEIAKKRLEFENQKTRLGIQL QNEIAKKRLEFENQKTRLGIQLDFEKNQLK K R L Q K T 0 1 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1062.5458 Q14683;G8JLG1 Q14683 807 814 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0032585 110.81 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 2 1.2016 1.1266 14.029 8 Median 1.1754 1.204 NaN 1 0 Median 1.3043 1.2239 NaN 1 1 Median 0.855 0.96851 NaN 1 0 Median 1.2282 1.1857 NaN 1 0 Median 0.7957 0.8931 11.533 2 0 Median 1.2787 1.1266 3.724 2 0 Median 29499000 14662000 14837000 612080 317940 294150 4720700 1838000 2882800 4173700 2070500 2103200 971240 413940 557310 14697000 8120700 6576100 4324500 1901400 2423100 28597 2889 30079 150024;150025;150026;150027;150028;150029;150030;150031 150916;150917;150918;150919;150920;150921 150918 6 RLEFLYDKLR ATDPQTKRKLDDASKRLEFLYDKLREQTLS DDASKRLEFLYDKLREQTLSPTITSGLHNI K R L L R E 0 2 0 1 0 0 1 0 0 0 3 1 0 1 0 0 0 0 1 0 0 0 10 2 1351.7612 D6REX3;O94979;H7BXG7;H0Y8W8 D6REX3 1180 1189 SEC31A Protein transport protein Sec31A yes no 3 0.002714 46.706 By MS/MS 1 1.1749 1.2654 NaN 1 Median 1.1749 1.2654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3783300 1774700 2008600 3783300 1774700 2008600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28598 823 30080 150032 150922 150922 1 RLEFPSGETIVMHNPK EAEYKKAVTTNQWHRRLEFPSGETIVMHNP LEFPSGETIVMHNPKVIVQFQPSSVPDEWG R R L P K V 0 1 1 0 0 0 2 1 1 1 1 1 1 1 2 1 1 0 0 1 0 0 16 1 1853.9458 Q9Y6Y8;A0A0C4DH82 Q9Y6Y8 382 397 SEC23IP SEC23-interacting protein yes no 3 3.2014E-05 55.011 By MS/MS 1 0.61021 0.63569 NaN 1 Median 0.61021 0.63569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10236000 7437100 2799100 10236000 7437100 2799100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28599 4502 30081 150033 150923 150923 1 RLEGTNVTVNVLHPGIVR RSKLANILFTRELARRLEGTNVTVNVLHPG GTNVTVNVLHPGIVRTNLGRHIHIPLLVKP R R L V R T 0 2 2 0 0 0 1 2 1 1 2 0 0 0 1 0 2 0 0 4 0 0 18 1 1973.117 Q9HBH5 Q9HBH5 234 251 RDH14 Retinol dehydrogenase 14 yes yes 3 1.0336E-08 94.845 By MS/MS By matching 1 1 1.0817 1.0768 0.18024 2 Median 1.0015 1.0782 NaN 1 0 Median 1.1684 1.0754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26881000 13045000 13836000 24768000 12052000 12716000 2112900 992510 1120400 0 0 0 0 0 0 0 0 0 0 0 0 28600 4018 30082 150034;150035 150924;150925 150925 2 RLEHSEWDSSR VAAENALSVAEEQIRRLEHSEWDSSRTPII EQIRRLEHSEWDSSRTPIIGSCGTQEQALL R R L S R T 0 2 0 1 0 0 2 0 1 0 1 0 0 0 0 3 0 1 0 0 0 0 11 1 1400.6433 Q14789 Q14789 3180 3190 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.00039616 57.802 By MS/MS By MS/MS By matching 1 1 1 1.2202 1.2498 22.748 3 Median 1.1501 1.2498 NaN 1 0 Median 1.2202 1.1436 NaN 1 0 Median 1.5907 1.7595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3934300 1781400 2152900 1189900 598800 591070 1970900 934830 1036000 773590 247780 525810 0 0 0 0 0 0 0 0 0 28601 2900 30083 150036;150037;150038 150926;150927;150928;150929 150929 4 RLEIEHSVPK KAIETFSGKVELQGKRLEIEHSVPKKQRSR ELQGKRLEIEHSVPKKQRSRKIQIRNIPPQ K R L P K K 0 1 0 0 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 10 1 1206.6721 Q9NZI8 Q9NZI8 67 76 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 8.0177E-05 85.963 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 5 5 1.0629 1.0197 24.965 21 Median 0.93507 0.94051 18.724 2 0 Median 1.2128 1.116 10.382 2 0 Median 0.73573 0.8037 28.067 4 0 Median 1.1642 1.0674 5.5402 3 0 Median 1.2523 1.3451 22.772 5 1 Median 1.0212 0.8804 12.122 5 0 Median 125290000 59334000 65953000 28078000 14705000 13373000 26510000 12279000 14232000 15167000 7332800 7834400 9894700 4185300 5709400 21563000 9408200 12155000 24073000 11425000 12649000 28602 4188 30084 150039;150040;150041;150042;150043;150044;150045;150046;150047;150048;150049;150050;150051;150052;150053;150054;150055;150056;150057;150058;150059 150930;150931;150932;150933;150934;150935;150936;150937;150938;150939;150940;150941;150942;150943;150944;150945;150946;150947;150948;150949;150950;150951;150952;150953;150954;150955;150956 150930 26 RLELQLQEVQGR SSLQTARQEGEQRRRRLELQLQEVQGRAGD RRRRLELQLQEVQGRAGDGERARAEAAEKL R R L G R A 0 2 0 0 0 3 2 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 12 1 1467.8158 Q7Z406;A0A0C4DFM8 Q7Z406 1273 1284 MYH14 Myosin-14 yes no 3 8.8632E-07 107.17 By MS/MS By MS/MS 1 2 1.2916 1.3043 15.193 3 Median 0.96274 1.0296 NaN 1 0 Median 1.3223 1.3353 3.3149 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17656000 7978000 9677900 9910700 4992200 4918500 7745100 2985700 4759400 0 0 0 0 0 0 0 0 0 0 0 0 28603 3242 30085 150060;150061;150062 150957;150958;150959;150960 150957 4 RLELYFRPK GGEEGVSRIYADPTKRLELYFRPKDPYCHP YADPTKRLELYFRPKDPYCHPVCANRFSTS K R L P K D 0 2 0 0 0 0 1 0 0 0 2 1 0 1 1 0 0 0 1 0 0 0 9 2 1220.703 Q9Y5Q8;Q5T7U1;Q5T7U4 Q9Y5Q8 59 67 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 0.00037963 84.615 By matching By MS/MS By matching 1 1 1 0.67386 0.7164 84.017 3 Median 0.17191 0.17354 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67386 0.7164 NaN 1 0 Median 0.84419 0.76997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17567000 11611000 5955500 6898000 5482800 1415200 0 0 0 10263000 5910800 4352100 405910 217650 188260 0 0 0 0 0 0 28604 4466 30086 150063;150064;150065 150961;150962 150962 2 RLEMYSR SREELEALFLPYDLKRLEMYSRNMVDYHLI LFLPYDLKRLEMYSRNMVDYHLIMDMIPAI K R L S R N 0 2 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 7 1 953.47529 Q9H0A0;A0A087WV29 Q9H0A0 824 830 NAT10 N-acetyltransferase 10 yes no 2 0.046594 51.346 By MS/MS 1 1.0393 1.264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0393 1.264 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1483000 706850 776110 0 0 0 0 0 0 1483000 706850 776110 0 0 0 0 0 0 0 0 0 28605 3921 30087 150066 150963 150963 1 RLEPLGIIVK PMKALAAEMTDYFSRRLEPLGIIVKELTGD DYFSRRLEPLGIIVKELTGDMQLSKSEILR R R L V K E 0 1 0 0 0 0 1 1 0 2 2 1 0 0 1 0 0 0 0 1 0 0 10 1 1136.7281 Q8N3C0 Q8N3C0 553 562 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0053653 55.549 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1.0401 1.0927 21.36 8 Median 0.85163 0.86989 1.3983 2 0 Median 1.2339 1.1628 16.815 2 0 Median 0.9275 1.088 8.6289 2 0 Median 1.2473 1.2042 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8527 1.6415 NaN 1 0 Median 29017000 14631000 14386000 12565000 6901200 5664000 10393000 4719500 5673600 5457100 2750900 2706200 390420 179030 211390 0 0 0 211260 80054 131200 28606 3366 30088 150067;150068;150069;150070;150071;150072;150073;150074 150964;150965;150966;150967;150968 150968 5 RLEQEKELLHSQNTWLNTELK DELQASDVSVKYREKRLEQEKELLHSQNTW ELLHSQNTWLNTELKTKTDELLALGREKGN K R L L K T 0 1 2 0 0 2 4 0 1 0 5 2 0 0 0 1 2 1 0 0 0 0 21 2 2608.3609 P12270 P12270 182 202 TPR Nucleoprotein TPR yes yes 4 0.00018243 33.833 By MS/MS 1 0.73541 0.97161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73541 0.97161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13457000 7009200 6447300 0 0 0 0 0 0 13457000 7009200 6447300 0 0 0 0 0 0 0 0 0 28607 1978 30089 150075 150969 150969 1 RLEQLHGELR RHLGHVQQLLRSSNRRLEQLHGELRELHAR RSSNRRLEQLHGELRELHARILLPGPGPGP R R L L R E 0 2 0 0 0 1 2 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1249.6891 Q6P5Z2 Q6P5Z2 63 72 PKN3 Serine/threonine-protein kinase N3 yes yes 3 0.0029763 41.283 By MS/MS By matching 1 1 0.95018 1.0106 44.496 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.198 1.3843 NaN 1 0 Median 0.75362 0.73779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1404400 679740 724690 0 0 0 0 0 0 929490 394980 534510 474940 284760 190180 0 0 0 0 0 0 28608 3162 30090 150076;150077 150970 150970 1 RLESIATTLVSHK ADHNGDLALDLALSRRLESIATTLVSHKAD SRRLESIATTLVSHKADVDMVDKSGWSLLH R R L H K A 1 1 0 0 0 0 1 0 1 1 2 1 0 0 0 2 2 0 0 1 0 0 13 1 1453.8253 Q9P2R3 Q9P2R3 267 279 ANKFY1 Rabankyrin-5 yes yes 3 0.00020941 63.128 By MS/MS By MS/MS By matching 1 1 1 1.1841 1.2333 11.049 3 Median 1.1841 1.2333 NaN 1 0 Median 1.3799 1.2931 NaN 1 1 Median 0.92497 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18575000 8637000 9938400 8707600 3757800 4949800 5273100 2274600 2998500 4594800 2604600 1990100 0 0 0 0 0 0 0 0 0 28609 4229 30091 150078;150079;150080 150971;150972;150973 150971 3 RLESLGALTHGDRR SELAGEQRFASIVAKRLESLGALTHGDRRA KRLESLGALTHGDRRATESRDLSRFNFDNK K R L R R A 1 3 0 1 0 0 1 2 1 0 3 0 0 0 0 1 1 0 0 0 0 0 14 2 1579.8543 A3KN83;K7ES28;Q9Y2G9 A3KN83 1012 1025 SBNO1;SBNO2 Protein strawberry notch homolog 1;Protein strawberry notch homolog 2 yes no 4 0.033486 28.64 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2129100 0 2129100 0 0 0 2129100 0 2129100 0 0 0 0 0 0 0 0 0 0 0 0 28610 501 30092 150081 150974 150974 1 RLESMLQPLAQELEATR LGAAEKEEDYHTALRRLESMLQPLAQELEA ESMLQPLAQELEATRDSLDKKNQHLASFPG R R L T R D 2 2 0 0 0 2 3 0 0 0 4 0 1 0 1 1 1 0 0 0 0 0 17 1 1984.0412 Q9BQS8 Q9BQS8 339 355 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes yes 3 0.029207 23.562 By MS/MS By MS/MS 1 1 0.76142 0.79126 20.829 2 Median 0.63858 0.6829 NaN 1 0 Median 0.9079 0.91683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2597400 1546000 1051300 1433600 937800 495770 1163800 608240 555560 0 0 0 0 0 0 0 0 0 0 0 0 28611 3791 30093 150082;150083 150975;150976 150976 2 RLETLLR IVIGCALEDQKKIKRRLETLLRNIENSDKA EDQKKIKRRLETLLRNIENSDKAIKLLEHS R R L L R N 0 2 0 0 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 1 899.55525 O95816 O95816 173 179 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 5.0763E-06 159.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1.0658 1.0248 16.522 7 Median 1.334 1.426 NaN 1 0 Median 1.0658 0.90511 NaN 1 1 Median 1.1399 1.1819 NaN 1 0 Median 1.1445 1.0248 NaN 1 0 Median 0.94951 1.0718 8.4749 2 0 Median 0.99795 0.88898 NaN 1 0 Median 81664000 39757000 41907000 11368000 4756100 6612200 6977300 3404700 3572600 13554000 6439600 7114200 4618900 1975700 2643200 37046000 19102000 17944000 8099100 4078600 4020500 28612 1795 30094 150084;150085;150086;150087;150088;150089;150090 150977;150978;150979;150980;150981;150982;150983;150984;150985;150986;150987 150982 11 RLETVALPLQGLEDLAADR SVLIGEQYLKDELKKRLETVALPLQGLEDL VALPLQGLEDLAADRINRLQAALASTQQFQ K R L D R I 3 2 0 2 0 1 2 1 0 0 5 0 0 0 1 0 1 0 0 1 0 0 19 1 2079.1324 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4766 4784 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00055824 30.428 By MS/MS By matching 1 1 0.68327 0.68957 8.6463 2 Median 0.67456 0.73304 NaN 1 0 Median 0.6921 0.64867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088400 2221800 1866500 1658800 971380 687380 2429600 1250400 1179200 0 0 0 0 0 0 0 0 0 0 0 0 28613 1220 30095 150091;150092 150988 150988 1 RLETYYK ETSGRVDDNEETIKKRLETYYKATEPVIAF DNEETIKKRLETYYKATEPVIAFYEKRGIV K R L Y K A 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 2 0 0 0 7 1 971.50763 Q5T9B7;P00568 Q5T9B7 165 171 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.04577 51.787 By MS/MS 1 1.8885 1.9702 NaN 1 Median 1.8885 1.9702 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17876000 3057300 14819000 17876000 3057300 14819000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28614 1825 30096 150093 150989 150989 1 RLEVLDSTK YSHTDIKVPDFSEYRRLEVLDSTKSSRESS DFSEYRRLEVLDSTKSSRESSEARKGFSYL R R L T K S 0 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 1 1059.5924 P47985;P0C7P4 P47985 93 101 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 2 0.0007438 117.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.99003 1.0318 25.989 3 Median 0.99003 1.0318 NaN 1 0 Median 1.7053 1.5819 NaN 1 0 Median 0.95034 0.98874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36532000 16993000 19539000 23647000 11624000 12022000 5662700 2112700 3550100 7222300 3256100 3966200 0 0 0 0 0 0 0 0 0 28615 2357 30097 150094;150095;150096;150097 150990;150991;150992;150993;150994;150995;150996 150991 7 RLFDANK LQQWYREHRSELNLRRLFDANKDRFNHFSL HRSELNLRRLFDANKDRFNHFSLTLNTNHG R R L N K D 1 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 862.4661 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41;K7ENA0;K7ELR7;A0A2R8YF08;A0A0J9YXM3;K7ERK8;K7EIL4;A0A0J9YXH9;A0A0J9YYI8 P06744 28 34 GPI Glucose-6-phosphate isomerase yes no 2 0.028559 62.717 By MS/MS 1 1.2269 1.1212 NaN 1 Median NaN NaN NaN 0 0 Median 1.2269 1.1212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1893300 880730 1012500 0 0 0 1893300 880730 1012500 0 0 0 0 0 0 0 0 0 0 0 0 28616 1875 30098 150098 150997 150997 1 RLFEGNALLR KAARELLTLDEKDPRRLFEGNALLRRLVRI EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R R L L R R 1 2 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 1 1187.6775 P46781;B5MCT8;C9JM19 P46781 70 79 RPS9 40S ribosomal protein S9 yes no 2;3 5.4517E-08 168.83 By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1.1949 1.1385 68.414 6 Median 1.4441 1.5286 29.39 2 0 Median 1.2291 1.0438 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53797 0.45604 68.76 2 0 Median 1.3845 1.556 NaN 1 1 Median NaN NaN NaN 0 0 Median 245260000 104880000 140380000 195070000 82101000 112970000 39966000 17509000 22457000 0 0 0 3454400 2522400 931970 6771600 2752700 4018900 0 0 0 28617 2345 30099 150099;150100;150101;150102;150103;150104;150105;150106 150998;150999;151000;151001;151002;151003;151004 150998 7 RLFEGNALLRR KAARELLTLDEKDPRRLFEGNALLRRLVRI KDPRRLFEGNALLRRLVRIGVLDEGKMKLD R R L R R L 1 3 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 11 2 1343.7786 P46781;B5MCT8;C9JM19 P46781 70 80 RPS9 40S ribosomal protein S9 yes no 3 5.0636E-05 82.543 By matching By MS/MS 1 1 1.1005 1.1887 8.2216 2 Median 1.0864 1.2598 NaN 1 0 Median 1.1148 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13473000 6963200 6510200 7277600 3974900 3302700 6195800 2988400 3207500 0 0 0 0 0 0 0 0 0 0 0 0 28618 2345 30100 150107;150108 151005 151005 1 RLFEQNVQR DPLNKEAAEVLQNNRRLFEQNVQRSMRGGY VLQNNRRLFEQNVQRSMRGGYIGSTYFERC R R L Q R S 0 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 1 1188.6364 P61081;M0QX69 P61081 158 166 UBE2M NEDD8-conjugating enzyme Ubc12 yes no 2;3 0.00094261 76.064 By MS/MS By MS/MS By MS/MS 1 1 2 1.1614 1.2227 2.3754 2 Median 1.1248 1.2023 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1992 1.2434 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8064100 2734100 5330000 2086500 859540 1227000 622000 0 622000 5355600 1874600 3481100 0 0 0 0 0 0 0 0 0 28619 2542 30101 150109;150110;150111;150112 151006;151007;151008;151009 151008 4 RLFIHESIHDEVVNR FAAVGTAGQRCTTARRLFIHESIHDEVVNR RLFIHESIHDEVVNRLKKAYAQIRVGNPWD R R L N R L 0 2 1 1 0 0 2 0 2 2 1 0 0 1 0 1 0 0 0 2 0 0 15 1 1862.9751 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTJ4;A0A1B0GV49;A0A1B0GUY0 P49419 335 349 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 3;4 8.9436E-05 60.55 By MS/MS By matching By matching 2 2 1 0.97767 1.0219 30.478 5 Median 0.92623 0.93535 12.52 2 0 Median NaN NaN NaN 0 0 Median 0.75931 0.82112 35.571 2 0 Median 1.5946 1.4671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19745000 9690200 10055000 11858000 5469000 6389000 0 0 0 7271600 3939800 3331800 615850 281500 334350 0 0 0 0 0 0 28620 318 30102 150113;150114;150115;150116;150117 151010;151011 151011 2 RLFNVDR EKLVLSKLYEEGSNKRLFNVDRHVGMAVAG LYEEGSNKRLFNVDRHVGMAVAGLLADARS K R L D R H 0 2 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 1 918.50355 P25788 P25788 66 72 PSMA3 Proteasome subunit alpha type-3 yes yes 2 0.050305 49.358 By MS/MS 1 1.41 1.5072 NaN 1 Median 1.41 1.5072 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2302800 727860 1574900 2302800 727860 1574900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28621 2137 30103 150118 151012 151012 1 RLFPYSQYYR FDPTELPELLKLYYRRLFPYSQYYRWLNYG KLYYRRLFPYSQYYRWLNYGGVIKNYFQHR R R L Y R W 0 2 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 3 0 0 0 10 1 1391.6986 P49642;F8VSB2;F8VNY2 P49642 19 28 PRIM1 DNA primase small subunit;DNA primase yes no 2 0.0038577 96.342 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28622 2388 30104 150119 151013 151013 1 RLFTNFHR GLQNKVENFIHKQERRLFTNFHRQLFCWLD FIHKQERRLFTNFHRQLFCWLDKWVDLTMD R R L H R Q 0 2 1 0 0 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 8 1 1089.5832 F5GWE5;Q00169;I3L4H1 F5GWE5 219 226 PITPNA Phosphatidylinositol transfer protein alpha isoform yes no 2 0.0063131 81.548 By MS/MS 1 0.85359 0.91894 NaN 1 Median 0.85359 0.91894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8449600 4033800 4415800 8449600 4033800 4415800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28623 997 30105 150120 151014 151014 1 RLFYNFDK NAEERRDVSLKDCMRRLFYNFDKNYKDWQS SLKDCMRRLFYNFDKNYKDWQSAVECIAVL R R L D K N 0 1 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 8 1 1101.5607 P52701;A0A494C0M1;A0A087WWJ1;A0A087WYT6 P52701 1035 1042 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0078746 75.189 By matching By MS/MS 1 1 0.71723 0.74566 28.387 2 Median NaN NaN NaN 0 0 Median 0.95538 0.91142 NaN 1 0 Median 0.53844 0.61005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5250800 2944900 2305900 0 0 0 1187900 338440 849460 4062900 2606400 1456500 0 0 0 0 0 0 0 0 0 28624 2453 30106 150121;150122 151015 151015 1 RLGAPQQPGPGPPPSR LQREAEYFELPELVRRLGAPQQPGPGPPPS LGAPQQPGPGPPPSRRGVHKEGSLGDELLP R R L S R R 1 2 0 0 0 2 0 3 0 0 1 0 0 0 6 1 0 0 0 0 0 0 16 1 1610.8641 Q96CX2 Q96CX2 128 143 KCTD12 BTB/POZ domain-containing protein KCTD12 yes yes 3 0.0067488 24.784 By matching By matching By MS/MS 1 2 1 0.87935 0.82677 61.397 4 Median 0.82464 0.77224 NaN 1 0 Median 0.98142 0.906 3.2909 2 0 Median 0.24344 0.2541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9643000 4786900 4856100 1988300 815140 1173100 6726100 3228000 3498200 928590 743810 184780 0 0 0 0 0 0 0 0 0 28625 3623 30107 150123;150124;150125;150126 151016 151016 1 RLGASLAFNNIYR FKRLYSLALHPNAFKRLGASLAFNNIYREF FKRLGASLAFNNIYREFREEESLVEQFVFE K R L Y R E 2 2 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 13 1 1493.8103 P78527 P78527 1075 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 8.1498E-05 85.672 By MS/MS 1 0.79153 0.8699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79153 0.8699 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10164000 3651900 6511800 0 0 0 0 0 0 10164000 3651900 6511800 0 0 0 0 0 0 0 0 0 28626 2647 30108 150127 151017 151017 1 RLGATIDVEHSHVR MRSIIFANYIARDTRRLGATIDVEHSHVRF RRLGATIDVEHSHVRFLGNLVLNLWDCGGQ R R L V R F 1 2 0 1 0 0 1 1 2 1 1 0 0 0 0 1 1 0 0 2 0 0 14 1 1588.8434 Q7L523;Q5VZM0 Q7L523 38 51 RRAGA;RRAGB Ras-related GTP-binding protein A yes no 4 0.0019594 48.527 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666300 0 1666300 547280 0 547280 1119000 0 1119000 0 0 0 0 0 0 0 0 0 0 0 0 28627 3223 30109 150128;150129 151018;151019 151019 2 RLGDSSLSR ELEIEERERRREEERRLGDSSLSRKDSRWG RREEERRLGDSSLSRKDSRWGDRDSEGTWR R R L S R K 0 2 0 1 0 0 0 1 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 1 989.52541 Q14152 Q14152 877 885 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0045598 66.692 By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1.1203 1.1872 20.565 7 Median 1.0651 1.161 9.849 2 0 Median 1.2866 1.2695 9.4801 2 0 Median 1.064 1.2941 NaN 1 0 Median 1.1395 1.0319 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84119 0.73831 NaN 1 0 Median 8322000 3827100 4494900 1071700 480120 591590 6555200 3004900 3550300 239230 107210 132030 128080 62665 65413 0 0 0 327830 172200 155630 28628 2860 30110 150130;150131;150132;150133;150134;150135;150136 151020;151021;151022;151023 151021 4 RLGFATSSDVIEMK VLQMDELKCRKRVLRRLGFATSSDVIEMKG RRLGFATSSDVIEMKGRVACEISSADELLL R R L M K G 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 14 1 1552.7919 P42285 P42285 860 873 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 0.0010874 61.353 By matching By MS/MS 1 2 1.0712 1.2426 32.525 3 Plateau NaN NaN NaN 0 0 Median 0.70075 0.67196 NaN 1 0 Median 0.98442 1.116 20.006 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11494000 6118100 5375600 0 0 0 727000 386870 340120 10767000 5731200 5035400 0 0 0 0 0 0 0 0 0 28629 2309 30111 150137;150138;150139 151024;151025 151024 1 RLGGGLGGTR VDVERGRTVKGWRPRRLGGGLGGTRRGGAD GWRPRRLGGGLGGTRRGGADVNIRHSGRDD R R L T R R 0 2 0 0 0 0 0 5 0 0 2 0 0 0 0 0 1 0 0 0 0 0 10 1 942.53591 P08621 P08621 191 200 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0087943 49.418 By MS/MS By MS/MS By matching By matching By MS/MS By matching 1 1 2 1 3 1 1.0937 1.148 31.695 9 Median 0.96712 0.95284 NaN 1 0 Median 0.62705 0.56949 NaN 1 0 Median 1.4037 1.4769 34.912 2 0 Median 1.1239 1.0341 NaN 1 0 Median 1.0937 1.1803 16.892 3 0 Median 1.3053 1.148 NaN 1 0 Median 20717000 10148000 10570000 2215700 1022500 1193200 2591900 1575500 1016400 3767700 1796100 1971600 220340 95922 124420 11286000 5403100 5882900 635800 254640 381160 28630 1905 30112 150140;150141;150142;150143;150144;150145;150146;150147;150148 151026;151027;151028;151029 151027 4 RLGLPGDEVDNKVK QRAPLKSVGPDFGKKRLGLPGDEVDNKVKG KRLGLPGDEVDNKVKGAAGRTDLLRLRRRF K R L V K G 0 1 1 2 0 0 1 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 14 2 1538.8417 P78527 P78527 2704 2717 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 3.2778E-06 90.476 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.91565 1.0522 25.142 6 Median 1.0647 1.1419 38.615 2 0 Median 1.0499 1.1185 NaN 1 0 Median 0.74587 0.98978 NaN 1 0 Median 1.1193 1.1914 NaN 1 0 Median 0.62272 0.73208 NaN 1 0 Median NaN NaN NaN 0 0 Median 86929000 45352000 41576000 19827000 10113000 9714000 21597000 10288000 11309000 38887000 21078000 17808000 2093700 976020 1117700 4524300 2897700 1626600 0 0 0 28631 2647 30113 150149;150150;150151;150152;150153;150154 151030;151031;151032;151033;151034;151035;151036;151037 151035 8 RLGLSTLGELK QVLAAKERHCGELKRRLGLSTLGELKQNLS ELKRRLGLSTLGELKQNLSRSWHDVQVSSA R R L L K Q 0 1 0 0 0 0 1 2 0 0 4 1 0 0 0 1 1 0 0 0 0 0 11 1 1185.7081 O43399;A0A087WYR3;A0A087WZ51 O43399 80 90 TPD52L2 Tumor protein D54 yes no 2;3 0.0045709 52.693 By MS/MS By matching 2 1 1.0842 1.0702 16.079 2 Median 1.149 1.1991 NaN 1 0 Median 1.023 0.95518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25382000 8548100 16834000 23251000 7560400 15690000 2131200 987740 1143500 0 0 0 0 0 0 0 0 0 0 0 0 28632 1571 30114 150155;150156;150157 151038;151039 151039 2 RLGSLVDEFK QAVDLTLPKVEAMNKRLGSLVDEFKELVYP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT K R L F K E 0 1 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1162.6346 P12956;B1AHC9 P12956 517 526 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.0016128 68.224 By matching By MS/MS By matching By MS/MS 1 1 1 2 0.94287 0.97079 16.711 5 Median 0.80336 0.80938 NaN 1 0 Median 1.1883 1.0886 NaN 1 0 Median 0.91292 0.97079 NaN 1 0 Median 1.1204 1.0273 24.401 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31310000 14585000 16725000 3694300 1867900 1826400 3564200 1393600 2170700 19343000 9210800 10132000 4708800 2112700 2596000 0 0 0 0 0 0 28633 1985 30115 150158;150159;150160;150161;150162 151040;151041;151042 151042 3 RLGVLYWK HRPDPGRPVGLEQLRRLGVLYWKLDADKYE VGLEQLRRLGVLYWKLDADKYENDPELEKI R R L W K L 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 0 1 1 1 0 0 8 1 1033.6073 Q9BV57 Q9BV57 33 40 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes yes 2 0.017342 55.441 By MS/MS 1 0.94408 0.83315 NaN 1 Median NaN NaN NaN 0 0 Median 0.94408 0.83315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6859600 3761100 3098500 0 0 0 6859600 3761100 3098500 0 0 0 0 0 0 0 0 0 0 0 0 28634 3846 30116 150163 151043 151043 1 RLHGLDEEAEQK KTHIDVIHYRKTDAKRLHGLDEEAEQKLFS DAKRLHGLDEEAEQKLFSEKRVELLKELSR K R L Q K L 1 1 0 1 0 1 3 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1423.7056 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 378 389 MCM4 DNA replication licensing factor MCM4 yes no 2;3 8.3753E-05 83.862 By MS/MS By MS/MS By matching By matching By matching 3 4 2 2 2 0.95052 0.98905 24.026 13 Median 0.95052 0.98905 12.606 3 0 Plateau 1.2674 1.2195 11.443 4 0 Median 0.83785 0.95378 2.2475 2 0 Median 1.6222 1.4587 35.919 2 0 Median 0.76553 0.85195 3.8288 2 0 Median NaN NaN NaN 0 0 Median 32075000 15129000 16946000 6814000 3487700 3326300 17987000 7903300 10084000 4985500 2613000 2372600 798840 320810 478030 1488900 803890 685040 0 0 0 28635 441 30117 150164;150165;150166;150167;150168;150169;150170;150171;150172;150173;150174;150175;150176 151044;151045;151046;151047;151048;151049;151050;151051;151052 151046 9 RLHGLPEQFLYGTATK RKEWLTNFMEDRRQRRLHGLPEQFLYGTAT LHGLPEQFLYGTATKHLTYNDFINKELILF R R L T K H 1 1 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 16 1 1829.9788 Q02880;E9PCY5 Q02880 697 712 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 3 3.227E-05 56.339 By MS/MS By matching By MS/MS 2 1 2 0.72295 0.86634 34.072 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79799 0.93045 10.096 2 0 Median 1.6742 1.6163 NaN 1 0 Median 0.63821 0.71353 9.1628 2 0 Median NaN NaN NaN 0 0 Median 30826000 17165000 13661000 0 0 0 0 0 0 21878000 12136000 9742300 425440 159220 266220 8522100 4869500 3652600 0 0 0 28636 2704 30118 150177;150178;150179;150180;150181 151053;151054;151055 151054 3 RLHNTIVEINNHK DAVAEKAGKVEAEVKRLHNTIVEINNHKLK VKRLHNTIVEINNHKLKAQQDKLDKINKQL K R L H K L 0 1 3 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 1 0 0 13 1 1586.8641 Q9NTJ3;E9PD53 Q9NTJ3 886 898 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3;4 0.00035106 53.252 By MS/MS By MS/MS 3 2 1.217 1.1705 10.227 3 Median NaN NaN NaN 0 0 Median 1.2791 1.2243 6.3602 2 0 Median NaN NaN NaN 0 0 Median 1.0817 1.0442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5316500 1680200 3636300 0 0 0 3219600 1079600 2140000 0 0 0 2096900 600590 1496300 0 0 0 0 0 0 28637 4108 30119 150182;150183;150184;150185;150186 151056;151057;151058;151059;151060 151058 5 RLHVSNIPFR QTQPSENTENKSQPKRLHVSNIPFRFRDPD KSQPKRLHVSNIPFRFRDPDLRQMFGQFGK K R L F R F 0 2 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 0 0 10 1 1237.7044 Q9NWB1;A0A087X2B1;A0A0G2JRA5;B0QYV1;F8VZY7;F8VR27;S4R469;J3KNW3;B7Z1U7;I3L1D4;A0A286YEU2;F8VZG9;O43251;B0QYY4;B0QYY7;F8VRS4;A0A0G2JSB3;B0QYY6;J3QRF4;J3QQZ2;A6NFN3;A0A3B3ITL7 Q9NWB1 118 127 RBFOX1;RBFOX2;RBFOX3 RNA binding protein fox-1 homolog 1;RNA binding protein fox-1 homolog;RNA binding protein fox-1 homolog 2;RNA binding protein fox-1 homolog 3 yes no 3 7.6242E-06 142.55 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 2 0.98438 1.0035 19.31 11 Median 0.75176 0.75916 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82171 0.8875 13.035 3 0 Median 1.0883 1.0035 9.0067 3 0 Median 0.87292 0.94101 10.292 2 0 Median 1.4293 1.2604 27.993 2 1 Median 68385000 34650000 33735000 1146200 666350 479830 0 0 0 19775000 10232000 9543200 15626000 6899800 8726400 26847000 14647000 12200000 4990300 2204700 2785600 28638 133 30120 150187;150188;150189;150190;150191;150192;150193;150194;150195;150196;150197 151061;151062;151063;151064;151065;151066;151067;151068 151063 8 RLIDLHSPSEIVK EGSKTWDRFQMRIHKRLIDLHSPSEIVKQI HKRLIDLHSPSEIVKQITSISIEPGVEVEV K R L V K Q 0 1 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 13 1 1505.8566 P60866;G3XAN0 P60866 87 99 RPS20 40S ribosomal protein S20 yes no 3 0.00011219 72.705 By MS/MS By MS/MS By MS/MS 1 2 1 0.9619 0.88668 8.8786 4 Median 0.89994 0.88441 NaN 1 0 Median 0.97266 0.85843 4.9428 2 0 Median 0.98547 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54151000 27933000 26218000 23571000 12837000 10734000 22087000 11077000 11010000 8493200 4018900 4474400 0 0 0 0 0 0 0 0 0 28639 2530 30121 150198;150199;150200;150201 151069;151070;151071;151072;151073;151074;151075 151069 7 RLIELYK ARLSFDKDAMVARARRLIELYKEAGISKDR DAMVARARRLIELYKEAGISKDRILIKLSS R R L Y K E 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 7 1 933.56475 P37837;F2Z393 P37837 124 130 TALDO1 Transaldolase yes no 2 0.0047071 104.45 By MS/MS By MS/MS By MS/MS 2 2 1 1.055 1.1199 11.737 5 Median 1.0499 1.0949 3.2013 2 0 Median 1.1242 1.0202 15.559 2 0 Median NaN NaN NaN 0 0 Median 1.4477 1.2608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 214240000 100260000 113980000 108920000 53085000 55838000 100990000 45231000 55756000 0 0 0 4331000 1945800 2385300 0 0 0 0 0 0 28640 2270 30122 150202;150203;150204;150205;150206 151076;151077;151078;151079;151080;151081;151082 151077 7 RLIFSTITSK LDRKIEFPLPDRRQKRLIFSTITSKMNLSE DRRQKRLIFSTITSKMNLSEEVDLEDYVAR K R L S K M 0 1 0 0 0 0 0 0 0 2 1 1 0 1 0 2 2 0 0 0 0 0 10 1 1164.6867 P43686 P43686 342 351 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.01834 40.728 By MS/MS 2 1.0253 1.0136 17.132 2 Median 1.0253 1.0136 17.132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12847000 5860000 6987000 12847000 5860000 6987000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28641 2327 30123 150207;150208 151083;151084 151084 2 RLIIEEDTENENEKK IGYDRSRRKYWFLNRRLIIEEDTENENEKK RLIIEEDTENENEKKIWYYSTKVQLAELID R R L K K I 0 1 2 1 0 0 5 0 0 2 1 2 0 0 0 0 1 0 0 0 0 0 15 2 1858.9272 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 476 490 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.0043695 27.335 By MS/MS 1 0.5738 0.76145 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5738 0.76145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1747200 1104700 642430 0 0 0 0 0 0 1747200 1104700 642430 0 0 0 0 0 0 0 0 0 28642 2762 30124 150209 151085;151086 151085 2 RLIISDR EKNVQKGKGLEGWEKRLIISDRAHIVFDFH KGLEGWEKRLIISDRAHIVFDFHQAADGIQ K R L D R A 0 2 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 7 1 871.52395 P30520;G3V2N1;Q8N142 P30520 126 132 ADSS;ADSSL1 Adenylosuccinate synthetase isozyme 2;Adenylosuccinate synthetase isozyme 1 yes no 2 0.025502 64.265 By matching By MS/MS 1 1 1.3221 1.2617 40.142 2 Median 1.6595 1.6758 NaN 1 0 Median 1.0533 0.94993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5742800 2512100 3230700 1445100 537350 907750 4297700 1974800 2322900 0 0 0 0 0 0 0 0 0 0 0 0 28643 2195 30125 150210;150211 151087 151087 1 RLIPNATGTGTFSPGASPGSEAR ______________________________ TGTFSPGASPGSEARTTGDISVEKLNLGTD R R L A R T 3 2 1 0 0 0 1 4 0 1 1 0 0 1 3 3 3 0 0 0 0 0 23 1 2243.1295 K7EN76;Q16512 K7EN76 7 29 PKN1 Serine/threonine-protein kinase N1 yes no 3 0.056924 6.295 By MS/MS 1 0.38317 0.42571 NaN 1 Median 0.38317 0.42571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4892900 3352100 1540800 4892900 3352100 1540800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28644 1384 30126 150212 151088 151088 1 RLITGLGVGR LRGRPKGSEMKYALKRLITGLGVGRETARP KYALKRLITGLGVGRETARPCYSLALAQLL K R L G R E 0 2 0 0 0 0 0 3 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 1 1040.6455 Q9BQG0 Q9BQG0 76 85 MYBBP1A Myb-binding protein 1A yes yes 2 0.0033653 60.518 By MS/MS By matching By MS/MS 1 1 1 1.0599 1.289 29.865 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0599 1.289 NaN 1 0 Median 0.86067 0.84258 NaN 1 0 Median 1.3854 1.4987 NaN 1 0 Median NaN NaN NaN 0 0 Median 11187000 5181200 6005500 0 0 0 0 0 0 6027700 2940100 3087600 975960 507970 467990 4183100 1733200 2449900 0 0 0 28645 3789 30127 150213;150214;150215 151089;151090;151091 151089 3 RLIVDVIR ENAEMDARTILLNTKRLIVDVIRFQPGETL TILLNTKRLIVDVIRFQPGETLTEILETPA K R L I R F 0 2 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 8 1 982.62875 P46940;H0YLE8 P46940 1390 1397 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0042362 132.76 By MS/MS By MS/MS By matching By matching By matching 3 3 1 1 3 1.2647 1.2728 20.081 11 Median 1.2167 1.3011 23.252 3 0 Median 1.2647 1.2772 15.763 3 0 Median 1.476 1.8646 NaN 1 0 Median 1.2974 1.1749 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2225 1.073 10.349 3 0 Median 44295000 18959000 25337000 32215000 13694000 18521000 8792400 3959500 4832900 1629200 582070 1047100 462350 197350 265000 0 0 0 1196700 525550 671170 28646 2350 30128 150216;150217;150218;150219;150220;150221;150222;150223;150224;150225;150226 151092;151093;151094;151095 151093 4 RLLAIQAK VDTEAEDMISAVKSRRLLAIQAKKEREIQE ISAVKSRRLLAIQAKKEREIQEREMKVKLE R R L A K K 2 1 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 1 911.59164 Q9UIG0 Q9UIG0 846 853 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0047255 99.139 By MS/MS By MS/MS 2 3 1.2147 1.079 12.797 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93216 1.0444 2.6226 2 0 Median 1.342 1.163 13.914 3 0 Median 43044000 20952000 22092000 0 0 0 0 0 0 0 0 0 0 0 0 24330000 12425000 11904000 18714000 8526700 10187000 28647 4290 30129 150227;150228;150229;150230;150231 151096;151097;151098;151099;151100 151097 5 RLLDQIVEK SCMLTGTPESVQSAKRLLDQIVEKGRPAPG SVQSAKRLLDQIVEKGRPAPGFHHGDGPGN K R L E K G 0 1 0 1 0 1 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1112.6554 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 162 170 FUBP1 Far upstream element-binding protein 1 no no 2 0.00083182 111.95 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 2 3 1 1 1.2743 1.2841 19.001 9 Median 1.3051 1.3377 NaN 1 0 Median 1.1774 1.1816 NaN 1 0 Median 1.5007 1.6338 34.056 2 0 Median 1.3678 1.264 5.6218 3 0 Median 1.245 1.3753 NaN 1 0 Median 1.2066 1.0533 NaN 1 0 Median 111010000 49535000 61474000 3547600 1722200 1825400 941600 383750 557850 75906000 34395000 41510000 26291000 11070000 15221000 2961700 1444200 1517500 1360200 519080 841120 28648 3599;723 30130 150232;150233;150234;150235;150236;150237;150238;150239;150240 151101;151102;151103;151104;151105;151106;151107;151108;151109 151106 9 RLLEDGEDFNLGDALDSSNSMQTIQK LNIKVKLEAEIATYRRLLEDGEDFNLGDAL GDALDSSNSMQTIQKTTTRRIVDGKVVSET R R L Q K T 1 1 2 4 0 2 2 2 0 1 4 1 1 1 0 3 1 0 0 0 0 0 26 1 2895.3556 P05783 P05783 382 407 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 1.5841E-60 186.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 1 4 2 1.0721 1.111 35.206 15 Median 0.98704 0.98458 5.0308 2 0 Median 1.0698 0.98792 11.194 2 0 Median 1.1029 1.171 55.651 4 0 Median 1.0721 1.0221 NaN 1 0 Median 1.1728 1.2167 5.3661 4 0 Median 0.85668 0.78626 24.579 2 0 Median 277440000 120680000 156760000 18601000 8723600 9876900 3899100 1765200 2134000 187800000 80074000 107730000 28614000 13277000 15337000 37007000 16148000 20859000 1520300 697450 822810 28649 1869 30131;30132 150241;150242;150243;150244;150245;150246;150247;150248;150249;150250;150251;150252;150253;150254;150255 151110;151111;151112;151113;151114;151115;151116;151117;151118;151119;151120;151121;151122;151123;151124;151125;151126;151127;151128 151128 623 19 RLLEEER MVGEGFIEVLTKKQRRLLEEERRKKEQAVQ EVLTKKQRRLLEEERRKKEQAVQVPVKGRG R R L E R R 0 2 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 943.50869 Q5JSZ5;H0Y412;A0A494C065;A0A494C0D3 Q5JSZ5 1572 1578 PRRC2B Protein PRRC2B yes no 2 0.062174 43.246 By matching By matching By MS/MS 1 1 2 0.95911 1.058 6.6652 4 Median 0.9094 1.0104 NaN 1 0 Median 1.0084 0.97214 NaN 1 0 Median 1.0402 1.1087 0.10383 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416800 1146100 1270700 134790 56045 78743 925670 468320 457340 1356300 621720 734610 0 0 0 0 0 0 0 0 0 28650 3051 30133 150256;150257;150258;150259 151129 151129 1 RLLEGEDAHLSSQQASGQSYSSR LDVKTRLEQEIATYRRLLEGEDAHLSSQQA HLSSQQASGQSYSSREVFTSSSSSSSRQTR R R L S R E 2 2 0 1 0 3 2 2 1 0 3 0 0 0 0 6 0 0 1 0 0 0 23 1 2505.1844 CON__P08779;P08779 CON__P08779 419 441 KRT16 Keratin, type I cytoskeletal 16 yes no 4 2.025E-08 60.464 By MS/MS 1 0.12544 0.13786 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12544 0.13786 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2324400 2131100 193310 0 0 0 0 0 0 2324400 2131100 193310 0 0 0 0 0 0 0 0 0 + 28651 754 30134 150260 151130 151130 1 RLLEGEDAHLTQYK LDVKTRLEQEIATYRRLLEGEDAHLTQYKK RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R R L Y K K 1 1 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 14 1 1671.858 CON__Q04695;Q04695;F5GWP8;A0A3B3IS58 CON__Q04695 386 399 KRT17 Keratin, type I cytoskeletal 17 no no 3 1.6311E-07 120.7 By matching By MS/MS By MS/MS 1 1 1 0.62382 0.59408 63.938 3 Median NaN NaN NaN 0 0 Median 0.40818 0.37285 NaN 1 0 Median 1.2989 1.3201 NaN 1 0 Median 0.62382 0.59408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70742000 37208000 33534000 0 0 0 3032700 1871900 1160800 28279000 10490000 17788000 39431000 24846000 14585000 0 0 0 0 0 0 + 28652 768 30135 150261;150262;150263 151131;151132;151133 151133 3 RLLEGEDAHLTQYKK LDVKTRLEQEIATYRRLLEGEDAHLTQYKK RLLEGEDAHLTQYKKEPVTTRQVRTIVEEV R R L K K E 1 1 0 1 0 1 2 1 1 0 3 2 0 0 0 0 1 0 1 0 0 0 15 2 1799.953 CON__Q04695;Q04695;F5GWP8;A0A3B3IS58 CON__Q04695 386 400 KRT17 Keratin, type I cytoskeletal 17 yes no 4 8.9682E-05 68.283 By MS/MS By MS/MS By MS/MS 1 2 1 0.73117 0.76409 44.203 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1619 1.3481 NaN 1 0 Median 0.73117 0.76409 23.3 2 0 Median NaN NaN NaN 0 0 Median 0.51738 0.48194 NaN 1 0 Median 21145000 11751000 9393400 0 0 0 0 0 0 3094800 1348900 1745900 13827000 7752500 6074400 0 0 0 4222900 2649800 1573100 + 28653 768 30136 150264;150265;150266;150267 151134;151135;151136;151137;151138 151137 5 RLLELGPKPEVAQQTR FFKLKNFKTAATFARRLLELGPKPEVAQQT LLELGPKPEVAQQTRKILSACEKNPTDAYQ R R L T R K 1 2 0 0 0 2 2 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 16 2 1834.0425 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1127 1142 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3;4 3.1535E-10 117 By MS/MS By MS/MS By MS/MS By MS/MS 7 3 1 1 0.88119 0.9114 14.42 12 Median 0.80924 0.86528 9.8158 7 2 Median 0.93704 1.0163 18.807 3 0 Median 1.0415 1.1741 NaN 1 0 Median 1.0428 1.0456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115690000 61382000 54311000 76598000 41366000 35231000 30118000 15588000 14531000 5787000 2923700 2863400 3189700 1504200 1685500 0 0 0 0 0 0 28654 2473 30137 150268;150269;150270;150271;150272;150273;150274;150275;150276;150277;150278;150279 151139;151140;151141;151142;151143;151144;151145;151146;151147;151148;151149;151150;151151;151152 151141 14 RLLETLFVHR VVHLACICHSFHYIKRLLETLFVHRFSHGT FHYIKRLLETLFVHRFSHGTMPLRNIFKNC K R L H R F 0 2 0 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 1 0 0 10 1 1282.751 Q9NZ01;M0R2N5 Q9NZ01 141 150 TECR Very-long-chain enoyl-CoA reductase yes no 3 0.001498 49.3 By MS/MS 1 1.4275 1.3379 NaN 1 Median NaN NaN NaN 0 0 Median 1.4275 1.3379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6237800 2772700 3465200 0 0 0 6237800 2772700 3465200 0 0 0 0 0 0 0 0 0 0 0 0 28655 4181 30138 150280 151153 151153 1 RLLGQIVDR PCVLTGTPESIEQAKRLLGQIVDRCRNGPG SIEQAKRLLGQIVDRCRNGPGFHNDIDSNS K R L D R C 0 2 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 1 1068.6404 Q96I24 Q96I24 139 147 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0022182 80.165 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.201 1.1945 11.594 6 Median 1.0364 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0954 1.2026 17.835 2 0 Median 1.3684 1.275 NaN 1 0 Median 1.1798 1.2697 NaN 1 0 Median 1.271 1.1237 NaN 1 0 Median 31864000 14055000 17809000 3685900 1724200 1961700 0 0 0 11780000 5112200 6667600 4057800 1736600 2321200 5466800 2433700 3033100 6874200 3048700 3825500 28656 3673 30139 150281;150282;150283;150284;150285;150286 151154;151155;151156;151157;151158;151159 151154 6 RLLGYVATLK VATCVRLLGRNSNSKRLLGYVATLKDNFGF NSNSKRLLGYVATLKDNFGFIETANHDKEI K R L L K D 1 1 0 0 0 0 0 1 0 0 3 1 0 0 0 0 1 0 1 1 0 0 10 1 1132.6968 O75534;E9PLT0 O75534 518 527 CSDE1 Cold shock domain-containing protein E1 yes no 2 0.0033366 60.59 By matching By matching By MS/MS 1 1 1 1.3192 1.3517 14.032 3 Median 1.3192 1.3517 NaN 1 0 Median 1.4153 1.4171 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1447 1.0892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5820400 2343500 3476900 2751600 1058700 1692900 1637700 672740 964930 0 0 0 1431100 612040 819080 0 0 0 0 0 0 28657 1684 30140 150287;150288;150289 151160;151161 151160 2 RLLHVAVSDVNDDVRR VAMAYCGSGNNKAIRRLLHVAVSDVNDDVR LLHVAVSDVNDDVRRAAVESLGFILFRTPE R R L R R A 1 3 1 3 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 4 0 0 16 2 1863.0075 A0A087WW66;Q99460;H7C378 A0A087WW66 601 616 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3;4 4.5302E-05 63.128 By MS/MS 2 1.0768 1.3378 6.4768 2 Median 1.0768 1.3378 6.4768 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10961000 5248500 5712500 10961000 5248500 5712500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28658 54 30141 150290;150291 151162;151163 151162 1 RLLLPLFR SCALDCGAGIGRITKRLLLPLFREVDMVDI GIGRITKRLLLPLFREVDMVDITEDFLVQA K R L F R E 0 2 0 0 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 1 1026.6702 Q9BV86 Q9BV86 78 85 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 2 0.02508 48.504 By MS/MS By matching By matching 1 1 1 1.1044 1.1629 14.038 3 Plateau 1.1044 1.1805 NaN 1 0 Median 1.099 0.93336 NaN 1 0 Median 0.88612 0.91876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10675000 5050200 5625200 6944000 3215500 3728600 2366200 1094300 1272000 1365100 740490 624640 0 0 0 0 0 0 0 0 0 28659 3848 30142 150292;150293;150294 151164 151164 1 RLLLQLEATK DAAINLTDPDGALAKRLLLQLEATKNSKGG GALAKRLLLQLEATKNSKGGSGGKTTGTPP K R L T K N 1 1 0 0 0 1 1 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 10 1 1183.7289 Q13561;H0YI98;F8W1I6;F8VW18 Q13561 176 185 DCTN2 Dynactin subunit 2 yes no 2 7.3999E-07 159.58 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.096 1.0915 8.1621 5 Median 1.096 1.0915 NaN 1 0 Median 1.1992 1.0946 NaN 1 0 Median 0.99627 1.01 NaN 1 0 Median 1.2564 1.1991 NaN 1 0 Median 0.9354 0.971 NaN 1 0 Median NaN NaN NaN 0 0 Median 54924000 24633000 30291000 16756000 7890100 8865900 6640800 2870400 3770400 9494100 4556800 4937300 20214000 8493500 11721000 1818800 822490 996300 0 0 0 28660 2824 30143 150295;150296;150297;150298;150299 151165;151166;151167;151168;151169;151170;151171;151172 151172 8 RLLLTGTPLQNK CKLTQVLNTHYVAPRRLLLTGTPLQNKLPE APRRLLLTGTPLQNKLPELWALLNFLLPTI R R L N K L 0 1 1 0 0 1 0 1 0 0 4 1 0 0 1 0 2 0 0 0 0 0 12 1 1352.814 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6 P51532 906 917 SMARCA4 Transcription activator BRG1 yes no 2 4.6896E-05 96.342 By MS/MS By matching 1 1 0.96461 1.0378 0.25958 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86398 1.0359 NaN 1 0 Median 1.077 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9034600 4808800 4225700 0 0 0 0 0 0 8014500 4368600 3645900 1020100 440270 579820 0 0 0 0 0 0 28661 366 30144 150300;150301 151173 151173 1 RLLPEEYHR LFTKFIRKFGFELVKRLLPEEYHRVLVNIR GFELVKRLLPEEYHRVLVNIRKAEARAKRH K R L H R V 0 2 0 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 9 1 1211.6411 Q5JTH9 Q5JTH9 1022 1030 RRP12 RRP12-like protein yes yes 3 0.043085 21.746 By MS/MS By matching 1 1 1.0158 0.99576 9.1252 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98184 1.0621 NaN 1 0 Median 1.0509 0.93354 NaN 1 0 Median 1992700 868200 1124500 0 0 0 0 0 0 0 0 0 0 0 0 1607200 671480 935750 385440 196720 188720 28662 3052 30145 150302;150303 151174 151174 0 RLLPSLIGR LLSSFDFFLTDARIRRLLPSLIGRHFYQRK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R R L G R H 0 2 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 9 1 1023.6553 O76021;J3QSV6;I3L3C4;I3L3U9 O76021 163 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.00054987 134.26 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 5 4 1.0667 1.0139 21.293 13 Median 2.1036 2.0726 NaN 1 0 Median 1.1808 1.0724 NaN 1 0 Median 0.91431 0.98751 NaN 1 0 Median 1.0882 1.0139 NaN 1 0 Median 0.95495 1.033 9.9975 5 0 Median 1.0986 0.98589 8.2096 4 0 Median 186450000 91360000 95093000 5753900 1933800 3820200 2860000 1278700 1581400 5831600 3097800 2733800 657140 278620 378520 114610000 57202000 57407000 56742000 27569000 29172000 28663 1716 30146 150304;150305;150306;150307;150308;150309;150310;150311;150312;150313;150314;150315;150316 151175;151176;151177;151178;151179;151180;151181;151182;151183;151184;151185 151181 11 RLLQDLQLGDEEDAR HRKKNSGPKAAKKKKRLLQDLQLGDEEDAR RLLQDLQLGDEEDARKRNPKAFAVQSAVRM K R L A R K 1 2 0 3 0 2 2 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 15 1 1769.8908 Q14692 Q14692 24 38 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.050115 18.364 By MS/MS 1 0.6319 0.65955 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6319 0.65955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17393000 10369000 7023500 0 0 0 0 0 0 17393000 10369000 7023500 0 0 0 0 0 0 0 0 0 28664 2893 30147 150317 151186 151186 0 RLLQEQHQLSSR HSADETIGVVHLVLRRLLQEQHQLSSRRLL VLRRLLQEQHQLSSRRLLNFDTELSTKEMR R R L S R R 0 2 0 0 0 3 1 0 1 0 3 0 0 0 0 2 0 0 0 0 0 0 12 1 1493.8063 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4697 4708 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.001356 40.373 By MS/MS By MS/MS 1 1 1.0695 1.0794 5.456 2 Median 0.95566 1.0385 NaN 1 0 Median 1.1969 1.1218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2110500 934110 1176300 820180 366250 453930 1290300 567870 722420 0 0 0 0 0 0 0 0 0 0 0 0 28665 189 30148 150318;150319 151187;151188;151189;151190 151190 4 RLLSVNIR EDKEALIAKCNDYRRRLLSVNIRVRADLRD KCNDYRRRLLSVNIRVRADLRDNYSPGWKF R R L I R V 0 2 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 8 1 969.60835 P07814 P07814 1333 1340 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.0052993 85.676 By MS/MS By MS/MS 1 2 1.1848 1.2427 6.6877 3 Median 1.1621 1.2427 NaN 1 0 Median 1.2367 1.2202 9.3391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22529000 9610000 12919000 14801000 6634900 8166000 7728200 2975100 4753100 0 0 0 0 0 0 0 0 0 0 0 0 28666 1892 30149 150320;150321;150322 151191;151192 151191 2 RLLTSITTK DKKKKTSKSKAITPKRLLTSITTKSNIHSS KAITPKRLLTSITTKSNIHSSVMASPGGLS K R L T K S 0 1 0 0 0 0 0 0 0 1 2 1 0 0 0 1 3 0 0 0 0 0 9 1 1031.6339 Q9NQW6;H7C3S1;H7C1K5;H7C1C2 Q9NQW6 909 917 ANLN Actin-binding protein anillin yes no 2 0.00083182 111.95 By MS/MS By MS/MS By matching 1 3 1 0.993 0.91975 20.696 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.193 1.3519 NaN 1 0 Median 0.993 0.91975 10.891 3 0 Median NaN NaN NaN 0 0 Median 0.90196 0.79143 NaN 1 0 Median 14145000 6563400 7581400 0 0 0 0 0 0 8716700 4107700 4609000 4713200 2195700 2517400 0 0 0 714980 259940 455040 28667 4069 30150 150323;150324;150325;150326;150327 151193;151194;151195;151196;151197 151194 5 RLLWHGSR GECQRYKPFKQLHNRRLLWHGSRTTNFAGI FKQLHNRRLLWHGSRTTNFAGILSQGLRIA R R L S R T 0 2 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 8 1 1023.5726 P09874 P09874 858 865 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.013348 60.91 By matching By MS/MS By matching 2 1 1 1.2598 1.2693 71.209 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61005 0.68505 100.68 2 0 Median 1.1788 1.154 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.744 1.5765 NaN 1 0 Median 9293200 4622200 4671000 0 0 0 0 0 0 6830300 3478100 3352200 2119500 1012300 1107100 0 0 0 343430 131830 211600 28668 1922 30151 150328;150329;150330;150331 151198 151198 1 RLLYMAIDGVAPR IFEYIDRLFSIVRPRRLLYMAIDGVAPRAK PRRLLYMAIDGVAPRAKMNQQRSRRFRASK R R L P R A 2 2 0 1 0 0 0 1 0 1 2 0 1 0 1 0 0 0 1 1 0 0 13 1 1473.8126 Q9H0D6 Q9H0D6 96 108 XRN2 5-3 exoribonuclease 2 yes yes 3 0.00035106 53.252 By matching By MS/MS By MS/MS 1 1 1 0.87865 1.0153 22.166 3 Median NaN NaN NaN 0 0 Median 1.4502 1.4348 NaN 1 0 Median 0.87865 1.0153 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87364 0.94923 NaN 1 0 Median NaN NaN NaN 0 0 Median 6008200 3047000 2961200 0 0 0 114670 44933 69737 4038600 2178800 1859800 0 0 0 1854900 823240 1031700 0 0 0 28669 3924 30152 150332;150333;150334 151199;151200;151201 151199 3 RLMAEDEEGYRK EQKKENERIEKERMRRLMAEDEEGYRKLID RMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ R R L R K L 1 2 0 1 0 0 3 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 12 2 1495.7089 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8YDA1;P51531;F6VDE0;A0A0U1RQZ9 P51532 529 540 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3 0.0003409 57.802 By MS/MS By MS/MS 1 1 1.0279 1.1277 2.0049 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92522 1.1118 NaN 1 0 Median 1.1419 1.1438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6759200 3434500 3324700 0 0 0 0 0 0 5523700 2894100 2629600 1235500 540370 695150 0 0 0 0 0 0 28670 366;2433 30153 150335;150336 151202;151203;151204;151205 151204 4 RLMTEILGR GGELNPGEDEVEGLKRLMTEILGRQDGVLQ EVEGLKRLMTEILGRQDGVLQDWVIDDCIG K R L G R Q 0 2 0 0 0 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 9 1 1087.6172 O43809;H3BND3;H3BV41 O43809 123 131 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2 0.0052766 63.216 By MS/MS By matching 1 1 1.1316 1.0904 7.156 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99973 1.0366 NaN 1 0 Median 1.2809 1.147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12437000 5085400 7351800 0 0 0 0 0 0 9574400 3816800 5757500 2862900 1268600 1594300 0 0 0 0 0 0 28671 1592 30154 150337;150338 151206 151206 1 RLNAQILSQR TEVVLKAPDSSPESRRLNAQILSQRIEKAK SPESRRLNAQILSQRIEKAKCLCDEIIKKL R R L Q R I 1 2 1 0 0 2 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 1 1197.6942 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3081 3090 SYNE2 Nesprin-2 yes no 2;3 0.00057273 107.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 0.874 0.96052 22.41 5 Median 0.60931 0.66214 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92286 1.0142 7.6932 2 1 Median NaN NaN NaN 0 0 Median 0.81219 0.87861 NaN 1 0 Median 1.3576 1.1916 NaN 1 0 Median 17374000 9357400 8016900 3435800 2116200 1319600 0 0 0 6591800 3581400 3010400 0 0 0 4633500 2457200 2176300 2713200 1202600 1510700 28672 3521 30155 150339;150340;150341;150342;150343;150344 151207;151208;151209;151210;151211;151212;151213;151214 151209 8 RLNDFASTVR VPEPKIIDAALRACRRLNDFASTVRILEVV LRACRRLNDFASTVRILEVVKDKAGPHKEI R R L V R I 1 2 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 1 1177.6204 P20674;H3BRM5;H3BV69;H3BNX8 P20674 98 107 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes no 2;3 2.0736E-05 150.1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.1503 1.043 8.4692 4 Median 1.0001 0.99783 NaN 1 0 Median 1.3994 1.1932 NaN 1 0 Median 0.92107 1.0003 NaN 1 0 Median 1.3231 1.0876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 264430000 100110000 164320000 86109000 37235000 48874000 172950000 60586000 112370000 4528700 1923700 2605100 842260 366500 475770 0 0 0 0 0 0 28673 2083 30156 150345;150346;150347;150348;150349;150350;150351 151215;151216;151217;151218;151219;151220;151221;151222;151223;151224;151225;151226 151223 12 RLNHYVLYK RFVLRALRMLPSTSRRLNHYVLYKAVQGFF LPSTSRRLNHYVLYKAVQGFFTSNNATRDF R R L Y K A 0 1 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 2 1 0 0 9 1 1204.6717 O43242 O43242 107 115 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2;3 0.00072375 107.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 1 1 1.1229 1.1426 13.43 13 Median 1.0313 1.0547 9.389 5 0 Median 1.2958 1.1426 8.3771 5 1 Linear 1.4428 1.6041 NaN 1 0 Median 1.2868 1.1799 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1771 1.072 NaN 1 0 Median 88496000 39347000 49149000 37350000 17177000 20173000 47193000 20337000 26856000 1651500 756420 895070 641960 255550 386410 0 0 0 1659600 821020 838530 28674 1560 30157 150352;150353;150354;150355;150356;150357;150358;150359;150360;150361;150362;150363;150364 151227;151228;151229;151230;151231;151232;151233;151234;151235;151236;151237;151238;151239;151240;151241;151242;151243;151244;151245 151237 19 RLNIFDMMAVTK KTDDLKKRKNIFTGKRLNIFDMMAVTKEAP TGKRLNIFDMMAVTKEAPETDTSPSLWDVE K R L T K E 1 1 1 1 0 0 0 0 0 1 1 1 2 1 0 0 1 0 0 1 0 0 12 1 1437.7472 Q92665 Q92665 255 266 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 2 0.019701 35.541 By MS/MS By matching By matching 1 1 1 1.1054 1.1813 5.6079 3 Plateau 1.1045 1.1832 NaN 1 0 Median 1.2335 1.1518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1054 1.0623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4835000 2035100 2799900 3444600 1503200 1941400 1345700 509360 836330 0 0 0 44656 22512 22145 0 0 0 0 0 0 28675 3548 30158 150365;150366;150367 151246 151246 1 RLNMATLR RMGGEEAEIRFCEHKRLNMATLRMTWEAKV IRFCEHKRLNMATLRMTWEAKVQLKEILIN K R L L R M 1 2 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 8 1 973.54912 Q08211 Q08211 944 951 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00045905 127.02 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.2179 1.2897 14.807 7 Median NaN NaN NaN 0 0 Median 1.4524 1.4002 NaN 1 0 Median 1.2179 1.4812 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1717 1.273 9.6289 3 0 Median 1.2436 1.1117 20.994 2 0 Median 51907000 22996000 28911000 0 0 0 13090000 5452800 7636700 11643000 5157400 6485400 0 0 0 21176000 9783500 11392000 5999400 2602200 3397200 28676 2736 30159 150368;150369;150370;150371;150372;150373;150374 151247;151248;151249;151250;151251;151252;151253;151254;151255;151256;151257 151247 11 RLNQQPSQGLGPR QTDTSDGESVTHHIRRLNQQPSQGLGPRGY IRRLNQQPSQGLGPRGYDPNRYRLHFERDS R R L P R G 0 2 1 0 0 3 0 2 0 0 2 0 0 0 2 1 0 0 0 0 0 0 13 1 1449.7801 P36915;A2AB27 P36915 62 74 GNL1 Guanine nucleotide-binding protein-like 1 yes no 3 0.018919 34.179 By MS/MS 1 1.3362 1.2135 NaN 1 Median NaN NaN NaN 0 0 Median 1.3362 1.2135 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1933100 788080 1145000 0 0 0 1933100 788080 1145000 0 0 0 0 0 0 0 0 0 0 0 0 28677 2263 30160 150375 151258 151258 1 RLNRPLTLSEK IHYDLLEKNINIVRKRLNRPLTLSEKIVYG IVRKRLNRPLTLSEKIVYGHLDDPASQEIE K R L E K I 0 2 1 0 0 0 1 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 11 2 1325.7779 A2A274;Q99798 A2A274 58 68 ACO2 Aconitate hydratase, mitochondrial yes no 3 0.035718 21.61 By matching By MS/MS By matching By matching 1 1 1 1 1.0675 1.091 38.86 4 Median 0.86718 0.87473 NaN 1 0 Median 1.3141 1.5998 NaN 1 0 Median 0.61475 0.68966 NaN 1 0 Median 1.3366 1.3606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11037000 5128800 5908400 3309100 1794000 1515200 6749000 2954300 3794700 552260 248570 303690 426780 131920 294860 0 0 0 0 0 0 28678 495 30161 150376;150377;150378;150379 151259 151259 1 RLNVALTR RANEHQGIGFLNDPRRLNVALTRARYGVII GFLNDPRRLNVALTRARYGVIIVGNPKALS R R L T R A 1 2 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 1 941.57705 Q92900 Q92900 869 876 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.029793 46.016 By MS/MS By MS/MS By MS/MS 1 1 1 1.0112 0.97485 21.172 3 Median 1.227 1.3632 NaN 1 0 Median 1.0112 0.97485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94125 0.92147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13904000 6585900 7317900 1722800 684650 1038200 10714000 5176100 5538000 0 0 0 1466800 725150 741680 0 0 0 0 0 0 28679 3564 30162 150380;150381;150382 151260;151261;151262;151263 151262 4 RLNVTPLAR DGAAALVLMTADAAKRLNVTPLARIVAFAD TADAAKRLNVTPLARIVAFADAAVEPIDFP K R L A R I 1 2 1 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 9 1 1038.6298 P24752 P24752 303 311 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.00083494 111.74 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.98891 0.96749 20.543 4 Median 0.73358 0.77185 NaN 1 0 Median 1.1523 1.0761 NaN 1 0 Median 0.84869 0.86985 NaN 1 0 Median 1.3834 1.2178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32365000 15582000 16783000 4447000 2253900 2193100 7906500 3612200 4294300 15068000 7534700 7533500 4943500 2181500 2762000 0 0 0 0 0 0 28680 2126 30163 150383;150384;150385;150386 151264;151265;151266;151267;151268;151269 151266 6 RLNVWDLSK SPHNETILASSGTDRRLNVWDLSKIGEEQS SSGTDRRLNVWDLSKIGEEQSAEDAEDGPP R R L S K I 0 1 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 1 1129.6244 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;Q16576;E9PC52;Q5JP02 Q16576 340 348 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.00041576 119.41 By MS/MS By MS/MS By MS/MS By matching 4 4 5 2 1.1142 1.1477 39.488 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1361 1.1783 28.736 4 1 Median 1.28 1.1693 26.28 4 0 Median 1.0499 1.1143 12.484 5 1 Median 0.64895 0.59955 92.591 2 0 Median 582460000 280750000 301710000 0 0 0 0 0 0 247230000 126430000 120810000 190100000 86344000 103750000 142060000 66389000 75674000 3066600 1586500 1480100 28681 2746;2990 30164 150387;150388;150389;150390;150391;150392;150393;150394;150395;150396;150397;150398;150399;150400;150401 151270;151271;151272;151273;151274;151275;151276;151277;151278;151279;151280;151281;151282;151283;151284 151270 15 RLPAFTLSHLESHR AEDVLAWEHERFAIRRLPAFTLSHLESHRD RRLPAFTLSHLESHRDGQRSSIMDVRSRVD R R L H R D 1 2 0 0 0 0 1 0 2 0 3 0 0 1 1 2 1 0 0 0 0 0 14 1 1662.8954 Q969V3;K7EMW4;K7ELZ9;K7ENM2;A0A0C4DGP7;K7EQ66 Q969V3 379 392 NCLN Nicalin yes no 4 0.0032477 31.827 By MS/MS 1 1.0888 1.0995 NaN 1 Median 1.0888 1.0995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4409900 1678100 2731800 4409900 1678100 2731800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28682 3589 30165 150402 151285 151285 1 RLPCNHIFHTSCLR NVCIICREEMVTGAKRLPCNHIFHTSCLRS KRLPCNHIFHTSCLRSWFQRQQTCPTCRMD K R L L R S 0 2 1 0 2 0 0 0 2 1 2 0 0 1 1 1 1 0 0 0 0 0 14 1 1809.8879 Q86TM6 Q86TM6 304 317 SYVN1 E3 ubiquitin-protein ligase synoviolin yes yes 4 5.1119E-05 77.527 By MS/MS 1 1.052 0.98602 NaN 1 Median NaN NaN NaN 0 0 Median 1.052 0.98602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8201700 3965500 4236200 0 0 0 8201700 3965500 4236200 0 0 0 0 0 0 0 0 0 0 0 0 28683 3268 30166 150403 151286 151286 1 RLPDAHSDYAR LSFRRSPTKSSLDYRRLPDAHSDYARYSGS LDYRRLPDAHSDYARYSGSYNDYLRAAQMH R R L A R Y 2 2 0 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 11 1 1299.632 Q96PK6 Q96PK6 637 647 RBM14 RNA-binding protein 14 yes yes 2;3 4.5207E-05 94.82 By matching By MS/MS By matching By MS/MS 2 6 1 7 0.78989 0.82809 30.039 16 Median NaN NaN NaN 0 0 Median 0.69233 0.59307 4.8491 2 0 Median 0.79601 0.82809 27.398 6 0 Median 1.1266 1.0497 NaN 1 0 Median 0.81422 0.88466 31.82 7 1 Median NaN NaN NaN 0 0 Median 43785000 23592000 20193000 0 0 0 1206000 678750 527250 16000000 8811400 7188900 177220 67359 109860 26402000 14034000 12367000 0 0 0 28684 3712 30167 150404;150405;150406;150407;150408;150409;150410;150411;150412;150413;150414;150415;150416;150417;150418;150419 151287;151288;151289;151290;151291;151292;151293;151294;151295;151296;151297 151293 11 RLPDGLTR MKKAIACLLFGGSRKRLPDGLTRRGDINLL LFGGSRKRLPDGLTRRGDINLLMLGDPGTA K R L T R R 0 2 0 1 0 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 1 926.52976 P33992;B1AHB1 P33992 364 371 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.013348 60.91 By MS/MS By MS/MS 1 1 0.82582 0.88334 2.6487 2 Median 0.84556 0.86695 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80654 0.90004 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4365100 2538000 1827100 2157000 1226500 930510 0 0 0 2208100 1311500 896580 0 0 0 0 0 0 0 0 0 28685 2224 30168 150420;150421 151298;151299;151300 151298 3 RLPEAIEEVK TTAELAVSLLLTTCRRLPEAIEEVKNGGWT LTTCRRLPEAIEEVKNGGWTSWKPLWLCGY R R L V K N 1 1 0 0 0 0 3 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 10 1 1182.6608 Q9UBQ7;U3KQ56 Q9UBQ7 125 134 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 2 0.00054445 87.913 By MS/MS 1 1.0373 0.92504 NaN 1 Median NaN NaN NaN 0 0 Median 1.0373 0.92504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9213700 4700200 4513500 0 0 0 9213700 4700200 4513500 0 0 0 0 0 0 0 0 0 0 0 0 28686 4243 30169 150422 151301;151302 151301 2 RLPENLYNDR DDTIYEDEDVKEAIRRLPENLYNDRMFRIK KEAIRRLPENLYNDRMFRIKRALDLNLKHQ R R L D R M 0 2 2 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 10 1 1288.6524 P14927;B7Z2R2;E5RHG9 P14927 50 59 UQCRB Cytochrome b-c1 complex subunit 7 yes no 2 2.0736E-05 150.1 By MS/MS By MS/MS By matching 1 1 1 0.9086 1.1583 13.998 3 Plateau 0.9086 0.90654 NaN 1 0 Median 1.3689 1.1671 NaN 1 0 Median 0.85329 0.92666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13514000 6131600 7382500 1492200 665030 827150 9571700 4096300 5475400 2450300 1370300 1080000 0 0 0 0 0 0 0 0 0 28687 630 30170 150423;150424;150425 151303;151304;151305 151305 3 RLPGAIDVIGQTITISR KWQDRYGRAESPDLRRLPGAIDVIGQTITI PGAIDVIGQTITISRVEGRRRANENSNIQV R R L S R V 1 2 0 1 0 1 0 2 0 4 1 0 0 0 1 1 2 0 0 1 0 0 17 1 1809.0472 Q6UN15;A0A0B4J203 Q6UN15 309 325 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2;3 0.00067116 42.556 By MS/MS By MS/MS By matching 2 2 1 1.0327 0.99027 19.759 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84303 0.94075 NaN 1 0 Median 1.0327 0.95617 12.21 2 0 Median NaN NaN NaN 0 0 Median 1.5555 1.3752 NaN 1 0 Median 5989800 3053300 2936500 0 0 0 0 0 0 4192400 2249300 1943100 1529600 704110 825440 0 0 0 267790 99913 167880 28688 3185 30171 150426;150427;150428;150429;150430 151306;151307 151307 2 RLPGANTPLPGLSHR GPHLYSSPTDSTDPRRLPGANTPLPGLSHR RLPGANTPLPGLSHRQGWPRPLTPPAAGGL R R L H R Q 1 2 1 0 0 0 0 2 1 0 3 0 0 0 3 1 1 0 0 0 0 0 15 1 1584.8849 Q96QT6;K7EPF7;C9J9G2 Q96QT6 564 578 PHF12 PHD finger protein 12 yes no 3 0.0062989 35.35 By MS/MS 1 0.8166 0.79945 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8166 0.79945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 811410 397870 413530 0 0 0 0 0 0 0 0 0 811410 397870 413530 0 0 0 0 0 0 28689 3723 30172 150431 151308 151308 0 RLPLNFLSGEK YEEAWTKYPRGLVPRRLPLNFLSGEKFKEC LVPRRLPLNFLSGEKFKECLDKFLRMNFSK R R L E K F 0 1 1 0 0 0 1 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 11 1 1272.719 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 295 305 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.00021461 115.78 By MS/MS By matching By MS/MS By matching 1 2 1 3 1.0688 1.0283 30.331 7 Median 1.0688 1.1137 NaN 1 0 Median 0.71244 0.70877 52.626 2 0 Median 1.0631 1.2055 NaN 1 0 Median 1.1012 1.0195 2.8691 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27706000 13460000 14246000 12730000 6100600 6629100 3052300 1593900 1458400 8904800 4375700 4529100 3019000 1389500 1629500 0 0 0 0 0 0 28690 213 30173 150432;150433;150434;150435;150436;150437;150438 151309;151310;151311;151312 151310 4 RLPNGTELR AVPLARAFLGQVLVRRLPNGTELRGRIVET GQVLVRRLPNGTELRGRIVETEAYLGPEDE R R L L R G 0 2 1 0 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1054.5883 P29372;A2IDA3 P29372 110 118 MPG DNA-3-methyladenine glycosylase yes no 2 0.0018862 82.75 By MS/MS By MS/MS 1 1 0.77507 0.76494 7.572 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69466 0.72506 NaN 1 0 Median 0.86479 0.80701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14357000 7825500 6531900 0 0 0 0 0 0 4492700 2708000 1784700 9864700 5117500 4747300 0 0 0 0 0 0 28691 2170 30174 150439;150440 151313;151314 151313 2 RLPNLPSQSR MPLILRDIRMRKMGRRLPNLPSQSRNKETL RKMGRRLPNLPSQSRNKETLGSEAVSSNVI R R L S R N 0 2 1 0 0 1 0 0 0 0 2 0 0 0 2 2 0 0 0 0 0 0 10 1 1166.652 Q14966;C9JWN0 Q14966 185 194 ZNF638 Zinc finger protein 638 yes no 2 0.02273 49.418 By MS/MS 1 0.61784 0.78048 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61784 0.78048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2445400 1304100 1141300 0 0 0 0 0 0 2445400 1304100 1141300 0 0 0 0 0 0 0 0 0 28692 2903 30175 150441 151315 151315 1 RLPNNHIGISFIPR SIKAPSGRDEPCLLKRLPNNHIGISFIPRE KRLPNNHIGISFIPREVGEHLVSIKKNGNH K R L P R E 0 2 2 0 0 0 0 1 1 3 1 0 0 1 2 1 0 0 0 0 0 0 14 1 1632.9212 O75369;E7EN95 O75369 1956 1969 FLNB Filamin-B yes no 2;3;4 1.2813E-19 147.62 By MS/MS By MS/MS By MS/MS By matching 5 2 1 1 0.82958 0.88713 9.0132 9 Median 0.78648 0.85467 9.0189 5 1 Median 0.93947 0.91398 5.9081 2 0 Median 0.79036 0.99842 NaN 1 0 Median 0.95195 0.88713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68874000 37754000 31120000 48906000 26982000 21925000 14685000 7582800 7102500 5082900 3083700 1999200 199490 105690 93805 0 0 0 0 0 0 28693 1664 30176 150442;150443;150444;150445;150446;150447;150448;150449;150450 151316;151317;151318;151319;151320;151321;151322 151317 5 RLPPIVR ERMKELSQDSTGRVKRLPPIVRGGAIDRYW QDSTGRVKRLPPIVRGGAIDRYWPTADGRL K R L V R G 0 2 0 0 0 0 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 7 1 849.55486 P52788;H7C2R7 P52788 110 116 SMS Spermine synthase yes no 2 0.010349 89.903 By MS/MS By MS/MS By matching By matching 2 3 2 1 0.902 0.84653 10.877 8 Median 0.84923 0.87011 8.2677 2 0 Median 0.92635 0.82021 16.034 3 0 Median 0.90827 0.93943 10.764 2 0 Median 0.93509 0.82314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32434000 16278000 16155000 7861200 3740100 4121100 19579000 10005000 9574600 4241300 2170100 2071200 751860 363420 388440 0 0 0 0 0 0 28694 2459 30177 150451;150452;150453;150454;150455;150456;150457;150458 151323;151324;151325;151326 151325 4 RLPPQQIEK ______________________________ ______________________________ R R L E K N 0 1 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 9 1 1107.64 B1AK87;B1AK88;P47756;B1AK85 B1AK87 3 11 CAPZB F-actin-capping protein subunit beta yes no 2 0.0012598 92.439 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 0.93183 0.88643 9.0348 6 Median 0.76142 0.7565 NaN 1 0 Median 0.99199 0.92053 6.6348 2 0 Median 0.7668 0.84343 NaN 1 0 Median 0.94794 0.89458 NaN 1 0 Median 0.91599 0.95914 NaN 1 0 Median NaN NaN NaN 0 0 Median 9942100 5183200 4758800 3009400 1673400 1336000 2498300 1220200 1278100 1562800 844220 718580 2377000 1231500 1145400 494630 213830 280800 0 0 0 28695 566 30178 150459;150460;150461;150462;150463;150464 151327;151328;151329;151330;151331;151332;151333;151334;151335 151330 9 RLPTPSMMNDYYAASPR SWLPKFSHADAQKMKRLPTPSMMNDYYAAS PTPSMMNDYYAASPRIFPHLCSLCNVECSH K R L P R I 2 2 1 1 0 0 0 0 0 0 1 0 2 0 3 2 1 0 2 0 0 0 17 1 1968.9186 Q14966 Q14966 406 422 ZNF638 Zinc finger protein 638 yes yes 3 3.4295E-06 66.809 By MS/MS 1 0.56567 0.71458 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56567 0.71458 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3236400 2331500 904830 0 0 0 0 0 0 3236400 2331500 904830 0 0 0 0 0 0 0 0 0 28696 2903 30179 150465 151336 151336 1585;1586 1 RLPTVLLK LELCDFVTASSFCRRRLPTVLLKLRMAQHL ASSFCRRRLPTVLLKLRMAQHLQAAVAFVE R R L L K L 0 1 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 8 1 938.62769 Q9NV31 Q9NV31 110 117 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.0098467 69.198 By matching By MS/MS By matching 1 2 2 1.2118 1.0968 12.879 5 Median NaN NaN NaN 0 0 Median 1.4457 1.2747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90615 0.98862 15.161 2 0 Median 1.2893 1.0864 1.3461 2 0 Median 14150000 6641100 7508600 0 0 0 508150 178820 329330 0 0 0 0 0 0 8607400 4205800 4401600 5034100 2256400 2777700 28697 4122 30180 150466;150467;150468;150469;150470 151337 151337 1 RLPTVMVR KATDAAYQAVKTPPRRLPTVMVRSPIDSAS AVKTPPRRLPTVMVRSPIDSASPGGDYPLG R R L V R S 0 2 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 2 0 0 8 1 970.57461 H7C128;H7C179;B5MCW3;H7C127;Q9H0E9;H7C2P4 H7C128 170 177 BRD8 Bromodomain-containing protein 8 yes no 2 0.020537 51.066 By MS/MS By MS/MS 2 1 0.78804 0.94471 9.8075 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77169 0.86945 13.777 2 0 Median 0.90571 0.88668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6081200 3203000 2878200 0 0 0 0 0 0 3927800 2175400 1752400 2153400 1027600 1125800 0 0 0 0 0 0 28698 620 30181 150471;150472;150473 151338;151339 151338 2 RLQAIIK DVDEYVKLGHEEQQKRLQAIIKKIDLDSDG LGHEEQQKRLQAIIKKIDLDSDGFLTESEL K R L I K K 1 1 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 7 1 840.55452 Q14257;H0YL43 Q14257 65 71 RCN2 Reticulocalbin-2 yes no 2 0.053116 46.37 By matching By MS/MS 1 2 1.4793 1.3853 19.22 3 Median 1.1853 1.2664 NaN 1 0 Median 1.7514 1.5925 19.717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4155200 1611400 2543800 745080 330840 414240 3410100 1280500 2129600 0 0 0 0 0 0 0 0 0 0 0 0 28699 2869 30182 150474;150475;150476 151340 151340 1 RLQDLATQLQEK EAAQAHTRELGRENRRLQDLATQLQEKHHR ENRRLQDLATQLQEKHHRISLEYSELQDKV R R L E K H 1 1 0 1 0 3 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 12 1 1441.7889 O75150;H3BP71;H3BS50 O75150 239 250 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2;3 0.0002816 128.17 By MS/MS By matching 2 1 0.80885 0.91689 10.486 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76089 0.86212 8.7105 2 0 Median 1.0391 0.99864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18724000 10478000 8245500 0 0 0 0 0 0 17860000 10025000 7835000 864050 453530 410520 0 0 0 0 0 0 28700 1648 30183 150477;150478;150479 151341;151342;151343 151342 3 RLQDSFASETNLDFR SQDSLFASRTLFKSRRLQDSFASETNLDFR RLQDSFASETNLDFRSGLAIVSQHDLDQLQ R R L F R S 1 2 1 2 0 1 1 0 0 0 2 0 0 2 0 2 1 0 0 0 0 0 15 1 1797.8646 Q92621 Q92621 1935 1949 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 6.1316E-08 92.575 By MS/MS 2 0.88192 1.1141 7.376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88192 1.1141 7.376 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31009000 15340000 15669000 0 0 0 0 0 0 31009000 15340000 15669000 0 0 0 0 0 0 0 0 0 28701 3547 30184 150480;150481 151344;151345 151344 2 RLQEALER AFLERLARREERRQKRLQEALERQKEFDPT REERRQKRLQEALERQKEFDPTITDASLSL K R L E R Q 1 2 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 1013.5618 E9PGZ1;E7EX44;Q05682;C9J813;C9JEK3 E9PGZ1 104 111 CALD1 Caldesmon yes no 2 0.010697 66.692 By MS/MS 1 0.94455 1.054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94455 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4794000 2466900 2327100 0 0 0 0 0 0 4794000 2466900 2327100 0 0 0 0 0 0 0 0 0 28702 928 30185 150482 151346 151346 1 RLQEDKEQMAQQLAEETQGFQR ELLQQQKELAQEQARRLQEDKEQMAQQLAE QMAQQLAEETQGFQRTLEAERQRQLEMSAE R R L Q R T 2 2 0 1 0 6 4 1 0 0 2 1 1 1 0 0 1 0 0 0 0 0 22 2 2662.2769 Q15149 Q15149 2482 2503 PLEC Plectin yes yes 3;4 7.1035E-28 156.92 By MS/MS By matching By MS/MS 2 1 2 1.1448 1.1258 4.7223 5 Median 1.1558 1.115 1.3551 2 0 Median 1.209 1.1659 NaN 1 0 Median 0.96877 1.1021 8.105 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87759000 38880000 48879000 79556000 34772000 44783000 1507600 732960 774610 6695600 3374600 3321000 0 0 0 0 0 0 0 0 0 28703 2933 30186 150483;150484;150485;150486;150487 151347;151348;151349;151350 151349 4 RLQEEINEVK IMEQLKSFQIIAHLKRLQEEINEVKTWSNR IAHLKRLQEEINEVKTWSNRITEKQDILNN K R L V K T 0 1 1 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1256.6725 Q70UQ0 Q70UQ0 121 130 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 0.010546 47.823 By matching By MS/MS 1 1 1.267 1.2037 0.11247 2 Median 1.1746 1.2028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3666 1.2047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1441200 640830 800330 872110 377780 494330 0 0 0 0 0 0 569050 263050 306000 0 0 0 0 0 0 28704 3208 30187 150488;150489 151351 151351 1 RLQELEGQIADLKK KKDANQAKLSERRRKRLQELEGQIADLKKK KRLQELEGQIADLKKKLNEQSKLLKLKEST K R L K K K 1 1 0 1 0 2 2 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 14 2 1639.9257 O95239 O95239 601 614 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.00089407 41.378 By MS/MS 1 0.94101 1.0723 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94101 1.0723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6260800 3056500 3204300 0 0 0 0 0 0 6260800 3056500 3204300 0 0 0 0 0 0 0 0 0 28705 1757 30188 150490 151352 151352 1 RLQEWYK IFHCHPPDQKIPKPKRLQEWYKKMLDKAFA DQKIPKPKRLQEWYKKMLDKAFAERIIHDY K R L Y K K 0 1 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 7 1 1021.5345 Q92793;I3L466;Q09472 Q92793 1498 1504 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 no no 2 0.057982 44.692 By matching By matching By MS/MS 1 1 1 1.0826 1.0426 16.625 3 Median 1.0826 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1446 1.365 NaN 1 0 Median 1.08 1.0426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11995000 5709800 6285000 7278900 3347800 3931100 0 0 0 2752300 1310600 1441600 1963700 1051400 912330 0 0 0 0 0 0 28706 3557;2748 30189 150491;150492;150493 151353 151353 1 RLQGQLEQGDDTAAER LRADTKRLKLLEEERRLQGQLEQGDDTAAE LQGQLEQGDDTAAERLEKVYEELRATGAAA R R L E R L 2 2 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 16 1 1785.8606 Q8NE71;H0YGW7 Q8NE71 396 411 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2;3 5.1319E-11 108.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 5 1 1 1.0633 1.1526 17.402 13 Median 1.0503 1.1669 1.7371 2 0 Median 1.0779 1.0392 15.032 2 0 Median 1.1965 1.3587 17.997 2 0 Median 1.036 0.91798 13.768 5 0 Median 1.0064 1.0935 NaN 1 0 Median 1.4659 1.3252 NaN 1 0 Median 37394000 16498000 20896000 4751500 2050000 2701500 8046100 4000500 4045500 11653000 4480700 7172300 11361000 5331600 6029600 894130 347740 546390 687560 287230 400330 28707 3427 30190 150494;150495;150496;150497;150498;150499;150500;150501;150502;150503;150504;150505;150506 151354;151355;151356;151357;151358;151359;151360;151361;151362;151363;151364;151365;151366;151367;151368;151369;151370 151363 17 RLQGSGVTVNALHPGVAR QSKLAIVLFTKELSRRLQGSGVTVNALHPG GSGVTVNALHPGVARTELGRHTGIHGSTFS R R L A R T 2 2 1 0 0 1 0 3 1 0 2 0 0 0 1 1 1 0 0 3 0 0 18 1 1831.0177 Q8NBN7 Q8NBN7 217 234 RDH13 Retinol dehydrogenase 13 yes yes 3 4.1482E-12 86.488 By MS/MS 1 0.84138 0.9058 NaN 1 Median 0.84138 0.9058 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18890000 10128000 8762000 18890000 10128000 8762000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28708 3409 30191 150507 151371 151371 1 RLQIEESSKPVR AECRPAASENYMRLKRLQIEESSKPVRLSQ RLKRLQIEESSKPVRLSQQLDKVVTTNYKP K R L V R L 0 2 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 12 2 1440.8049 P13984 P13984 129 140 GTF2F2 General transcription factor IIF subunit 2 yes yes 3 0.0003409 57.802 By matching By MS/MS By MS/MS 1 2 2 1.0396 1.1366 23.226 5 Median 1.1863 1.3758 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96893 1.1218 11.211 2 0 Median 0.97627 0.91943 29.987 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3797000 1710800 2086200 118950 50430 68522 0 0 0 2049600 957860 1091800 1628400 702500 925900 0 0 0 0 0 0 28709 1999 30192 150508;150509;150510;150511;150512 151372;151373;151374 151372 3 RLQIWYR LYGILQLQRKIKRERRLQIWYRR_______ QRKIKRERRLQIWYRR______________ R R L Y R R 0 2 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 7 1 1033.5821 A0A087WXF6;A0A087WTI3;O75251 A0A087WXF6 207 213 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes no 2 2.3439E-06 164.78 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0802 0.98749 27.905 5 Median 0.9421 0.98749 NaN 1 0 Median 1.4616 1.3074 45.936 2 0 Median 1.0673 1.1066 NaN 1 0 Median 1.0987 0.92485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24146000 11142000 13004000 13431000 6795500 6635900 6906500 2588400 4318100 2286300 935750 1350600 1521400 822230 699200 0 0 0 0 0 0 28710 18 30193 150513;150514;150515;150516;150517 151375;151376;151377 151376 3 RLQLLEEENKER VDAASLRRQIIKLNRRLQLLEEENKERAKR LNRRLQLLEEENKERAKREMVMYSITVAFW R R L E R A 0 2 1 0 0 1 4 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 2 1555.8318 H7C433;A0A0A0MS29;Q9GZY8;E9PPW6 H7C433 118 129 MFF Mitochondrial fission factor yes no 3 0.00019608 71.241 By MS/MS By MS/MS 1 1 1.0102 0.97374 11.019 2 Median 1.0491 1.0526 NaN 1 0 Median 0.97261 0.90075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3372000 1747800 1624300 1651100 869310 781820 1720900 878450 842450 0 0 0 0 0 0 0 0 0 0 0 0 28711 173 30194 150518;150519 151378;151379;151380 151380 3 RLQNLWR NIDNVVLDEDRSGARRLQNLWRDQREEELG DEDRSGARRLQNLWRDQREEELGEYYMKKY R R L W R D 0 2 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 7 1 984.56173 O00267;M0QYL9 O00267 124 130 SUPT5H Transcription elongation factor SPT5 yes no 2 0.03285 57.102 By MS/MS 1 0.57468 0.69893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57468 0.69893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4879100 2865900 2013200 0 0 0 0 0 0 4879100 2865900 2013200 0 0 0 0 0 0 0 0 0 28712 1452 30195 150520 151381 151381 1 RLQQFLEFKE GEHLNAVQASAEHQKRLQQFLEFKE_____ AEHQKRLQQFLEFKE_______________ K R L K E - 0 1 0 0 0 2 2 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 10 2 1336.7139 Q9BTX1 Q9BTX1 665 674 NDC1 Nucleoporin NDC1 yes yes 2;3 0.0010294 81.594 By MS/MS 2 1.2379 1.4331 21.318 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2379 1.4331 21.318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10668000 4830200 5837600 0 0 0 0 0 0 10668000 4830200 5837600 0 0 0 0 0 0 0 0 0 28713 3831 30196 150521;150522 151382;151383;151384;151385 151385 4 RLQQQQQQQQLAQMK KELMRQRQQQQEALRRLQQQQQQQQLAQMK RLQQQQQQQQLAQMKLPSSSTWGQQSNTTA R R L M K L 1 1 0 0 0 9 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 15 1 1882.9796 Q6Y7W6;I1E4Y6 Q6Y7W6 908 922 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 0.022204 18.596 By MS/MS By matching 1 1 1.1825 1.1675 14.115 2 Median 1.2604 1.2901 NaN 1 0 Median 1.1094 1.0566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2835700 1193200 1642400 1447300 612870 834450 1388300 580350 808000 0 0 0 0 0 0 0 0 0 0 0 0 28714 3192 30197 150523;150524 151386;151387 151387 2 RLQQTQNQVDEVVDIMR ______________________________ QQTQNQVDEVVDIMRVNVDKVLERDQKLSE R R L M R V 0 2 1 2 0 4 1 0 0 1 1 0 1 0 0 0 1 0 0 3 0 0 17 1 2071.048 Q15836 Q15836 14 30 VAMP3 Vesicle-associated membrane protein 3 yes yes 3 9.4785E-06 56.215 By MS/MS 1 1.4712 1.5977 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4712 1.5977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3471400 1328100 2143200 0 0 0 0 0 0 3471400 1328100 2143200 0 0 0 0 0 0 0 0 0 28715 2974 30198 150525 151388 151388 1634 1 RLQSIGTENTEENRR KGILAADESTGSIAKRLQSIGTENTEENRR RLQSIGTENTEENRRFYRQLLLTADDRVNP K R L R R F 0 3 2 0 0 1 3 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 15 2 1801.9031 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8 J3KPS3 43 57 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 3;4 3.4328E-10 106.52 By MS/MS By MS/MS By matching By matching 4 3 1 1 1.1289 1.3588 49.698 9 Median 1.1652 1.3592 75.344 4 0 Median 1.1289 1.4742 13.252 3 0 Plateau 1.2571 1.4821 NaN 1 0 Median 0.98895 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62273000 27911000 34362000 16599000 7501300 9097400 43629000 19428000 24201000 1437400 623130 814300 608630 358720 249910 0 0 0 0 0 0 28716 1310 30199 150526;150527;150528;150529;150530;150531;150532;150533;150534 151389;151390;151391;151392;151393 151391 5 RLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI IEDFLERRLQTQVFKLGLAKSIHHARVLIR R R L F K L 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 1018.5924 P46781;B5MCT8;C9JM19 P46781 109 116 RPS9 40S ribosomal protein S9 yes no 2 0.0050009 91.318 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 4 5 1.2638 1.1792 20.402 17 Median 1.1743 1.1742 23.969 3 0 Median 1.1087 1.0171 30.177 3 1 Median 1.17 1.2331 NaN 1 0 Median 1.4669 1.2985 NaN 1 0 Median 1.2247 1.3411 14.551 4 0 Median 1.3895 1.147 4.9567 5 0 Median 189670000 85922000 103750000 79429000 35559000 43870000 34171000 16342000 17830000 25731000 11735000 13997000 3371700 1428300 1943400 37172000 16685000 20487000 9796700 4173200 5623400 28717 2345 30200 150535;150536;150537;150538;150539;150540;150541;150542;150543;150544;150545;150546;150547;150548;150549;150550;150551 151394;151395;151396;151397;151398;151399;151400;151401;151402;151403;151404;151405 151395 12 RLQTSSVLVSGLR LYSRQLYVLGHEAMKRLQTSSVLVSGLRGL MKRLQTSSVLVSGLRGLGVEIAKNIILGGV K R L L R G 0 2 0 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 2 0 0 13 1 1414.8256 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 69 81 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2;3 2.3476E-06 116.54 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 1.0858 1.088 16.299 9 Median 1.0858 1.088 6.3185 3 0 Median 1.3541 1.3055 6.5142 2 0 Median 0.72486 0.88158 11.046 3 0 Median 1.154 1.1297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158900000 75573000 83325000 127620000 62042000 65575000 17760000 7378700 10382000 12529000 5717600 6811600 991640 434480 557160 0 0 0 0 0 0 28718 2100 30201 150552;150553;150554;150555;150556;150557;150558;150559;150560 151406;151407;151408;151409;151410;151411;151412;151413;151414 151406 7 RLQYTEHQQLEGWK GKLVKSIIRVVFHDRRLQYTEHQQLEGWKW RRLQYTEHQQLEGWKWNRPGDRLLDLDIPM R R L W K W 0 1 0 0 0 3 2 1 1 0 2 1 0 0 0 0 1 1 1 0 0 0 14 1 1814.9064 Q9NZI7;C9JWL3 Q9NZI7 125 138 UBP1 Upstream-binding protein 1 yes no 3 0.0004633 45.79 By MS/MS By MS/MS 1 1 1.1501 1.1642 34.867 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3331 1.4897 NaN 1 0 Median 0.99228 0.90982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6399200 2853400 3545800 0 0 0 0 0 0 4587400 2015500 2571900 1811800 837930 973870 0 0 0 0 0 0 28719 4187 30202 150561;150562 151415;151416 151416 2 RLQYTEHQQLEGWR GKLVKSIFRVVFHDRRLQYTEHQQLEGWRW RRLQYTEHQQLEGWRWNRPGDRILDIDIPM R R L W R W 0 2 0 0 0 3 2 1 1 0 2 0 0 0 0 0 1 1 1 0 0 0 14 1 1842.9125 Q12800;F8VX55;F8VWL0;Q9NZI6 Q12800 128 141 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 3;4 6.7709E-07 96.135 By MS/MS By MS/MS By matching 2 2 1 1.0801 1.0861 31.029 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0913 1.1786 11.567 2 0 Median 1.1887 1.1006 12.655 2 0 Median NaN NaN NaN 0 0 Median 0.6769 0.58726 NaN 1 0 Median 27759000 14480000 13279000 0 0 0 0 0 0 19141000 10379000 8762800 7516500 3471300 4045100 0 0 0 1101400 630460 470970 28720 2760 30203 150563;150564;150565;150566;150567 151417;151418;151419;151420;151421;151422;151423 151418 7 RLRPEDSFMSVYPMQTEHHQTPLDYNR MQTPQLTSTIMREPKRLRPEDSFMSVYPMQ PMQTEHHQTPLDYNRRGTSLMEDDEEPIVE K R L N R R 0 3 1 2 0 2 2 0 2 0 2 0 2 1 3 2 2 0 2 1 0 0 27 2 3346.5612 Q8N3U4 Q8N3U4 1131 1157 STAG2 Cohesin subunit SA-2 yes yes 5 1.3164E-08 41.908 By MS/MS 1 0.54326 0.6199 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54326 0.6199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10660000 6669000 3991400 0 0 0 0 0 0 10660000 6669000 3991400 0 0 0 0 0 0 0 0 0 28721 3369 30204 150568 151424 151424 1 RLSAIFLR EVYEAVKNYTDKRGRRLSAIFLRLPSRSEL YTDKRGRRLSAIFLRLPSRSELPDYYLTIK R R L L R L 1 2 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 8 1 974.60253 Q86U86;E7EVG2;H0Y5B5 Q86U86 679 686 PBRM1 Protein polybromo-1 yes no 2 0.0062898 81.642 By MS/MS By matching By matching 1 1 1 0.84124 0.98335 18.495 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84124 1.0627 NaN 1 0 Median 1.0859 0.98335 NaN 1 0 Median 0.69086 0.74736 NaN 1 0 Median NaN NaN NaN 0 0 Median 26414000 14129000 12285000 0 0 0 0 0 0 20429000 11018000 9410400 2816800 1399700 1417100 3168200 1710900 1457300 0 0 0 28722 3273 30205 150569;150570;150571 151425;151426 151426 2 RLSAQGQAISVVGSLSSMSPLEEEAPQAK KEEKVVKTESVLIKRRLSAQGQAISVVGSL LSSMSPLEEEAPQAKRRPEPIIPVTQPRLA R R L A K R 4 1 0 0 0 3 3 2 0 1 3 1 1 0 2 6 0 0 0 2 0 0 29 1 2969.5128 Q92797;A0A087WUE9;M0R3C7 Q92797 492 520 SYMPK Symplekin yes no 3 6.5429E-06 36.767 By MS/MS 1 0.66418 0.75236 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66418 0.75236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6015300 3489000 2526200 0 0 0 0 0 0 6015300 3489000 2526200 0 0 0 0 0 0 0 0 0 28723 3558 30206 150572 151427 151427 1 RLSEDYGVLK GLGPLNIPLLADVTRRLSEDYGVLKTDEGI ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG R R L L K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 1 1178.6295 P32119;A6NIW5 P32119 110 119 PRDX2 Peroxiredoxin-2 yes no 2 0.00058556 93.178 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.98906 0.95923 21.114 5 Median 0.98906 1.0229 NaN 1 0 Median 1.1444 1.0292 9.9638 2 0 Median 0.82392 0.87143 NaN 1 0 Median 0.72421 0.64108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 301070000 147000000 154070000 212890000 103690000 109200000 43147000 20177000 22970000 36684000 18612000 18072000 8345200 4521300 3823900 0 0 0 0 0 0 28724 2215 30207 150573;150574;150575;150576;150577 151428;151429;151430;151431;151432;151433;151434;151435;151436;151437 151428 10 RLSEDYGVLKTDEGIAYR GLGPLNIPLLADVTRRLSEDYGVLKTDEGI EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT R R L Y R G 1 2 0 2 0 0 2 2 0 1 2 1 0 0 0 1 1 0 2 1 0 0 18 2 2084.0538 P32119 P32119 110 127 PRDX2 Peroxiredoxin-2 yes yes 3 2.174E-11 99.813 By MS/MS 1 0.95937 0.96257 NaN 1 Median 0.95937 0.96257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32296000 15511000 16785000 32296000 15511000 16785000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28725 2215 30208 150578 151438;151439 151438 2 RLSELLR KNLKLGIHEDSTNRRRLSELLRYHTSQSGD HEDSTNRRRLSELLRYHTSQSGDEMTSLSE R R L L R Y 0 2 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 1 885.5396 P08238 P08238 450 456 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.0054204 102.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 4 2 1 1 2 1.1565 1.1482 26.12 14 Median 1.1969 1.2634 9.6281 4 0 Median 1.1311 1.0236 8.959 4 0 Median 0.91404 1.0379 15.362 2 0 Median 1.0211 0.90478 NaN 1 0 Median 2.3595 2.5637 NaN 1 0 Median 1.1934 1.0668 9.8178 2 0 Median 150800000 65758000 85046000 56276000 24662000 31614000 76053000 33896000 42157000 6757600 2849200 3908400 3393400 1456800 1936500 3376000 839990 2536000 4948000 2054200 2893800 28726 1899 30209 150579;150580;150581;150582;150583;150584;150585;150586;150587;150588;150589;150590;150591;150592 151440;151441;151442;151443;151444;151445;151446;151447;151448;151449 151440 10 RLSESLHVVDENKNESK LKHVHAKSEPSKPARRLSESLHVVDENKNE SESLHVVDENKNESKLEREHKRRTSTPVIM R R L S K L 0 1 2 1 0 0 3 0 1 0 2 2 0 0 0 3 0 0 0 2 0 0 17 2 1983.0021 Q8NFC6 Q8NFC6 633 649 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 4 0.026923 15.942 By MS/MS 1 0.90002 1.1943 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90002 1.1943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1432700 673610 759050 0 0 0 0 0 0 1432700 673610 759050 0 0 0 0 0 0 0 0 0 28727 3434 30210 150593 151450;151451 151450 2 RLSFAVPFR SDEMMKSYVAWDREKRLSFAVPFREMKPVI AWDREKRLSFAVPFREMKPVIFLDVFLPRV K R L F R E 1 2 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 9 1 1091.624 P78527 P78527 891 899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0010526 100.98 By MS/MS 1 1.0304 1.1198 NaN 1 Median 1.0304 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26130000 13329000 12802000 26130000 13329000 12802000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28728 2647 30211 150594 151452;151453 151452 2 RLSFLVSYIASK GILLYGLASRLRDTRRLSFLVSYIASKKIH DTRRLSFLVSYIASKKIHTEPQLSAALEYV R R L S K K 1 1 0 0 0 0 0 0 0 1 2 1 0 1 0 3 0 0 1 1 0 0 12 1 1382.7922 P47897;A0A1B0GVU9;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2 P47897 68 79 QARS Glutamine--tRNA ligase yes no 2 0.00037726 86.898 By MS/MS By matching 1 2 0.98858 0.99186 12.288 3 Median 0.81389 0.83498 NaN 1 0 Median 1.1167 1.025 4.651 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8691700 3539800 5152000 5844900 2259500 3585400 2846800 1280200 1566600 0 0 0 0 0 0 0 0 0 0 0 0 28729 2356 30212 150595;150596;150597 151454 151454 0 RLSGFLR RQLLLQVESTTVATRRLSGFLRTLADRLEG ESTTVATRRLSGFLRTLADRLEGTKELLSS R R L L R T 0 2 0 0 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 7 1 847.50282 Q8IUF8 Q8IUF8 307 313 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.052956 46.426 By MS/MS By matching 1 1 1.1071 1.0921 3.7893 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2192 1.1218 NaN 1 0 Median 1.0052 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median 4517400 2380700 2136800 0 0 0 0 0 0 0 0 0 2767600 1543100 1224500 1749900 837580 912270 0 0 0 28730 3313 30213 150598;150599 151455 151455 1 RLSIEGNIAVGK GVSSSRGLHAGRGPRRLSIEGNIAVGKSTF GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH R R L G K S 1 1 1 0 0 0 1 2 0 2 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1255.7248 Q16854 Q16854 40 51 DGUOK Deoxyguanosine kinase, mitochondrial yes yes 2;3 0.00085242 70.977 By MS/MS By MS/MS 2 2 1.8901 1.8288 32.869 4 Median 1.354 1.4208 50.377 2 0 Median 1.9475 1.8288 8.1236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13024000 4414300 8609200 11019000 3821100 7198100 2004400 593270 1411100 0 0 0 0 0 0 0 0 0 0 0 0 28731 2999 30214 150600;150601;150602;150603 151456;151457 151456 2 RLSPIMLGK PVKLYVYDLSKGLARRLSPIMLGKQLEGIW SKGLARRLSPIMLGKQLEGIWHTSIVVHKD R R L G K Q 0 1 0 0 0 0 0 1 0 1 2 1 1 0 1 1 0 0 0 0 0 0 9 1 1013.6056 Q6ICB0 Q6ICB0 23 31 DESI1 Desumoylating isopeptidase 1 yes yes 2 0.017988 46.158 By MS/MS By matching 1 1 0.91756 0.85797 5.0242 2 Median 0.89713 0.889 NaN 1 0 Median 0.93845 0.82803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8412600 4384600 4028000 5576600 2901400 2675300 2836000 1483200 1352700 0 0 0 0 0 0 0 0 0 0 0 0 28732 3139 30215 150604;150605 151458 151458 1 RLSQEQVDNFTLDINTAYAR QNLSEKLSEQELQFRRLSQEQVDNFTLDIN QVDNFTLDINTAYARLRGIEQAVQSHAVAE R R L A R L 2 2 2 2 0 2 1 0 0 1 2 0 0 1 0 1 2 0 1 1 0 0 20 1 2353.1662 Q16891;B9A067;C9J406;H7C463 Q16891 526 545 IMMT MICOS complex subunit MIC60 yes no 3 4.4215E-14 99.86 By MS/MS 1 1.0786 1.1058 NaN 1 Median 1.0786 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8919900 4252100 4667900 8919900 4252100 4667900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28733 3001 30216 150606 151459 151459 1 RLSSEVEALRR DGHLREKQRTQEELRRLSSEVEALRRQLLQ EELRRLSSEVEALRRQLLQEQESVKQAHLR R R L R R Q 1 3 0 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 11 2 1314.7368 P15924 P15924 1656 1666 DSP Desmoplakin yes yes 3 6.1142E-05 110.08 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.96501 1.0138 21.608 4 Median NaN NaN NaN 0 0 Median 1.0106 0.9999 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92145 1.0278 NaN 1 0 Median 0.7178 0.84355 NaN 1 0 Median 1.3035 1.4158 NaN 1 0 Median 11755000 5946700 5808000 0 0 0 1009700 498460 511200 0 0 0 647070 230000 417070 7100600 4053400 3047200 2997400 1164800 1832600 28734 2021 30217 150607;150608;150609;150610 151460;151461;151462 151460 2 RLSSFVTK FELVINLSMRGAGGRRLSSFVTKGYRTRRL MRGAGGRRLSSFVTKGYRTRRLAADFSVPL R R L T K G 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 8 1 936.53927 F8VPD4;P27708;H7C3Z5 F8VPD4 1341 1348 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.018279 54.157 By matching By MS/MS 1 1 1.4151 1.3877 52.973 2 Median 1.9935 2.0183 NaN 1 0 Median 1.0045 0.95418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3966700 1803800 2162900 965100 351740 613360 3001600 1452100 1549600 0 0 0 0 0 0 0 0 0 0 0 0 28735 1057 30218 150611;150612 151463 151463 1 RLSTPAGVQVILR QPSNIKRKNKHGWVRRLSTPAGVQVILRRM VRRLSTPAGVQVILRRMLKGRKSLSH____ R R L L R R 1 2 0 0 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 13 1 1408.8514 M0R226;Q9BQ48 M0R226 161 173 MRPL34 Ribosomal protein L34;39S ribosomal protein L34, mitochondrial yes no 3 0.00020399 63.662 By MS/MS 1 0.87643 0.87444 NaN 1 Median 0.87643 0.87444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5865900 2907000 2959000 5865900 2907000 2959000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28736 1434 30219 150613 151464;151465 151464 2 RLTAEDLFEAR IIRQQGLASYDYVRRRLTAEDLFEARIISL YVRRRLTAEDLFEARIISLETYNLLREGTR R R L A R I 2 2 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 1 1319.6834 Q15149;H0YDN1 Q15149 3783 3793 PLEC Plectin yes no 3 0.059168 17.587 By matching By MS/MS 1 1 1.215 1.2331 14.515 2 Median NaN NaN NaN 0 0 Median 1.1873 1.1128 NaN 1 0 Median 1.2433 1.3664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2462900 1089700 1373200 0 0 0 889130 345280 543850 1573700 744370 829360 0 0 0 0 0 0 0 0 0 28737 2933 30220 150614;150615 151466 151466 0 RLTAIIEEAEEAPGARPQLQDAWR AEFGSGTLDLPALTRRLTAIIEEAEEAPGA EEAPGARPQLQDAWRGPREPGPAGRGDGDS R R L W R G 5 3 0 1 0 2 4 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 24 2 2719.4042 P58107;A0A075B730 P58107 2570 2593 EPPK1 Epiplakin yes no 3;4 5.4091E-05 32.952 By MS/MS By matching 3 2 0.8296 0.92467 12.588 5 Median 0.8296 0.92467 8.3873 3 0 Median 0.9059 0.85368 21.931 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27679000 13986000 13693000 19722000 10118000 9604200 7956500 3867600 4088900 0 0 0 0 0 0 0 0 0 0 0 0 28738 2520 30221 150616;150617;150618;150619;150620 151467;151468;151469 151469 3 RLTDADAMK VAIGQKRSTVAQLVKRLTDADAMKYTIVVS VAQLVKRLTDADAMKYTIVVSATASDAAPL K R L M K Y 2 1 0 2 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 9 1 1019.507 P25705;K7ENJ4 P25705 262 270 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.0046467 66.27 By MS/MS By MS/MS By matching 1 1 1 1.1561 1.1036 15.986 3 Plateau 0.9732 0.9717 NaN 1 0 Median 1.3733 1.2534 NaN 1 0 Median 0.85118 0.93339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12481000 5431800 7049700 5368800 2440600 2928200 6956800 2921600 4035200 155950 69591 86364 0 0 0 0 0 0 0 0 0 28739 2135 30222 150621;150622;150623 151470;151471;151472;151473 151473 4 RLTELETAVR QDKFSQAAKVAELEKRLTELETAVRCDQDA AELEKRLTELETAVRCDQDAQNPLSAGLQG K R L V R C 1 2 0 0 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 10 1 1186.667 Q13561;H0YI98;F8W1I6;F8VW18;F8VRV7 Q13561 230 239 DCTN2 Dynactin subunit 2 yes no 2 0.0015313 68.735 By MS/MS By matching 1 1 1.2228 1.2083 13.576 2 Median NaN NaN NaN 0 0 Median 1.4748 1.33 NaN 1 0 Median 1.0138 1.0977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5251600 2370700 2880900 0 0 0 2496900 917180 1579700 2754700 1453500 1301200 0 0 0 0 0 0 0 0 0 28740 2824 30223 150624;150625 151474 151474 1 RLTGFHETSNINDFSAGVANR HIRAYDPKGGLDNARRLTGFHETSNINDFS ETSNINDFSAGVANRSASIRIPRTVGQEKK R R L N R S 2 2 3 1 0 0 1 2 1 1 1 0 0 2 0 2 2 0 0 1 0 0 21 1 2305.12 A0A2R8YDT1;P15104 A0A2R8YDT1 433 453 GLUL Glutamine synthetase yes no 3;4 1.5245E-12 80.156 By MS/MS By matching 2 1 1.0406 1.0949 9.1779 3 Median 0.9881 1.0397 7.3151 2 0 Median NaN NaN NaN 0 0 Median 1.1567 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40349000 19819000 20529000 37174000 18284000 18890000 0 0 0 3174600 1535200 1639400 0 0 0 0 0 0 0 0 0 28741 398 30224 150626;150627;150628 151475;151476;151477 151476 3 RLTPLQLEIQR RQKSQLQRLLQELRRRLTPLQLEIQRVVEK ELRRRLTPLQLEIQRVVEKADSWVEKEEPA R R L Q R V 0 2 0 0 0 2 1 0 0 1 3 0 0 0 1 0 1 0 0 0 0 0 11 1 1365.8092 Q8N163;H0YB24;G3V119 Q8N163 895 905 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2;3 3.9005E-05 134.3 By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 0.84727 0.96011 13.551 10 Median 0.81521 0.90572 10.471 2 0 Median 1.0736 1.035 3.4042 2 0 Median 0.71506 0.84767 15.646 4 0 Median 1.0098 0.9886 6.3584 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60310000 33524000 26786000 20685000 11554000 9131000 2740300 1341900 1398400 35849000 20094000 15755000 1036600 534790 501850 0 0 0 0 0 0 28742 3354 30225 150629;150630;150631;150632;150633;150634;150635;150636;150637;150638 151478;151479;151480;151481;151482;151483;151484;151485;151486;151487;151488;151489 151487 12 RLTPTEVKDYLAAIA EDNIEVGICNEAGFRRLTPTEVKDYLAAIA RLTPTEVKDYLAAIA_______________ R R L I A - 3 1 0 1 0 0 1 0 0 1 2 1 0 0 1 0 2 0 1 1 0 0 15 2 1659.9196 A0A024RA52;P25787;C9JCK5 A0A024RA52 220 234 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 0.0052855 39.917 By MS/MS By matching 1 1 0.86968 0.86033 4.4604 2 Median 0.84889 0.8879 NaN 1 0 Median 0.89097 0.83362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10135000 5204800 4930200 8568300 4420600 4147700 1566700 784220 782470 0 0 0 0 0 0 0 0 0 0 0 0 28743 7 30226 150639;150640 151490 151490 1 RLTVMSLQESGLK SPYLVPVIAPSDDARRLTVMSLQESGLKVN ARRLTVMSLQESGLKVNQPASFAIRLNGAK R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 1 0 0 2 1 0 0 1 0 0 13 1 1460.8021 O75369;E7EN95 O75369 2289 2301 FLNB Filamin-B yes no 2;3 1.7255E-07 159.44 By MS/MS By MS/MS By matching By matching 4 4 1 1 1.2636 1.271 26.71 10 Median 1.2636 1.2932 11.675 4 0 Median 1.1651 1.102 11.099 4 0 Median 2.1186 2.5286 NaN 1 0 Median 1.6239 1.5126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86687000 38897000 47790000 63771000 29198000 34573000 19738000 8621000 11117000 3015000 995160 2019800 162370 82657 79717 0 0 0 0 0 0 28744 1664 30227 150641;150642;150643;150644;150645;150646;150647;150648;150649;150650 151491;151492;151493;151494;151495;151496;151497;151498;151499;151500;151501 151499 11 RLTVNEAVK AQAASGFLLDPVRNRRLTVNEAVKEGVVGP DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R R L V K E 1 1 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1028.5978 Q15149;H0YDN1 Q15149 2884 2892 PLEC Plectin yes no 2 0.0075754 57.96 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 1 1 1.2988 1.2098 21.605 5 Median NaN NaN NaN 0 0 Median 1.4086 1.3579 NaN 1 0 Median 0.99268 1.1436 NaN 1 0 Median 1.2988 1.2098 NaN 1 0 Median 1.6729 1.8991 NaN 1 0 Median 1.267 1.1255 NaN 1 0 Median 8262500 3700300 4562200 0 0 0 1793900 747860 1046000 469310 239370 229940 318940 126290 192660 1765700 798810 966930 3914600 1788000 2126600 28745 2933 30228 150651;150652;150653;150654;150655 151502;151503;151504 151504 3 RLTVSSLQESGLK SPFVVPVASPSGDARRLTVSSLQESGLKVN ARRLTVSSLQESGLKVNQPASFAVSLNGAK R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 13 1 1416.7936 P21333;Q60FE5;A0A087WWY3 P21333 2334 2346 FLNA Filamin-A no no 2;3 4.5251E-53 229.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 6 4 5 2 1 1.0408 1.0791 23.773 23 Median 1.1728 1.2028 9.9958 5 0 Median 0.96389 0.89202 18.401 6 0 Median 1.0749 1.2816 8.9506 4 0 Median 1.0952 1.0573 11.01 5 2 Median 1.4907 1.686 2.9906 2 0 Median 0.99969 0.88802 NaN 1 0 Median 551180000 265230000 285960000 215200000 98369000 116840000 283700000 142810000 140890000 32060000 15282000 16778000 10073000 4874200 5198300 9425300 3532200 5893100 718840 361170 357670 28746 2088;3120 30229 150656;150657;150658;150659;150660;150661;150662;150663;150664;150665;150666;150667;150668;150669;150670;150671;150672;150673;150674;150675;150676;150677;150678 151505;151506;151507;151508;151509;151510;151511;151512;151513;151514;151515;151516;151517;151518;151519;151520;151521;151522;151523;151524;151525;151526;151527;151528 151518 24 RLTVTSLQETGLK SPFVVPVASLSDDARRLTVTSLQETGLKVN ARRLTVTSLQETGLKVNQPASFAVQLNGAR R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 1 3 0 0 1 0 0 13 1 1444.8249 Q14315 Q14315 2410 2422 FLNC Filamin-C yes yes 2;3 1.1771E-07 124.38 By MS/MS By MS/MS By matching By matching By matching 5 5 1 1 2 1.2311 1.1918 31.409 14 Median 1.4129 1.4193 6.9156 5 0 Median 1.1295 1.0403 21.298 5 0 Median 1.6171 1.9282 NaN 1 0 Median 1.0024 0.93369 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89134 0.79189 44.475 2 0 Median 111040000 47086000 63950000 53941000 21675000 32266000 53055000 23908000 29146000 2720000 865900 1854100 993810 488890 504910 0 0 0 326090 147440 178650 28747 2871 30230 150679;150680;150681;150682;150683;150684;150685;150686;150687;150688;150689;150690;150691;150692 151529;151530;151531;151532;151533;151534;151535;151536;151537 151531 8 RLVEEVTDDKTLPK TTLDEVELHFGAQVRRLVEEVTDDKTLPKL RRLVEEVTDDKTLPKLERKRLQVEQAPHSS R R L P K L 0 1 0 2 0 0 2 0 0 0 2 2 0 0 1 0 2 0 0 2 0 0 14 2 1641.8938 H0YNP9;Q8N4P3;H0YKT9 H0YNP9 84 97 HDDC3 Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase MESH1 yes no 3 0.00023137 63.29 By MS/MS 1 0.94431 0.81875 NaN 1 Median NaN NaN NaN 0 0 Median 0.94431 0.81875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3576600 1788600 1788000 0 0 0 3576600 1788600 1788000 0 0 0 0 0 0 0 0 0 0 0 0 28748 1204 30231 150693 151538 151538 1 RLVELLMHNDYK PNDKIQAVIDAGVCRRLVELLMHNDYKVVS VCRRLVELLMHNDYKVVSPALRAVGNIVTG R R L Y K V 0 1 1 1 0 0 1 0 1 0 3 1 1 0 0 0 0 0 1 1 0 0 12 1 1529.8024 P52294;C9JYI4;O60684;Q5TFJ7;O15131 P52294 300 311 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 3 0.00013975 73.881 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.1716 1.1763 21.8 5 Median 1.1716 1.1763 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0287 1.1551 NaN 1 0 Median 1.7285 1.6033 18.658 2 0 Median 1.0212 1.0556 NaN 1 0 Median NaN NaN NaN 0 0 Median 26938000 13274000 13664000 6827100 3374200 3452900 0 0 0 13861000 6968300 6892600 1431300 562750 868580 4819000 2369100 2449900 0 0 0 28749 2449;1626;1524 30232 150694;150695;150696;150697;150698 151539;151540;151541;151542;151543 151542 5 RLVEVDSSR VFEEEVRETRRRHERRLVEVDSSRQQEYDF RRRHERRLVEVDSSRQQEYDFKMAQALEEL R R L S R Q 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 9 1 1059.5673 Q03252 Q03252 240 248 LMNB2 Lamin-B2 yes yes 2 0.001339 89.355 By MS/MS By matching By MS/MS By MS/MS 1 1 4 4 1.1391 1.1361 19.913 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98574 1.1 NaN 1 0 Median 1.3928 1.2977 NaN 1 0 Median 0.98591 0.94365 13.613 4 1 Linear 1.3722 1.2217 10.193 4 0 Median 39565000 19714000 19850000 0 0 0 0 0 0 10283000 4953100 5329800 590170 220750 369420 21984000 11791000 10193000 6707800 2749600 3958100 28750 2709 30233 150699;150700;150701;150702;150703;150704;150705;150706;150707;150708 151544;151545;151546;151547;151548;151549;151550 151547 7 RLVGDVIQR RERTLVAVKPDGVQRRLVGDVIQRFERRGF PDGVQRRLVGDVIQRFERRGFTLVGMKMLQ R R L Q R F 0 2 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 1 1054.6247 Q4TT34;F2Z2X0;O00746;H0Y6J0;A0A087WVT9 Q4TT34 60 68 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2 0.0015106 85.676 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.051 1.0364 36.387 4 Median 0.66553 0.69759 NaN 1 0 Median 1.5837 1.4488 NaN 1 0 Median 0.74016 0.80379 NaN 1 0 Median 1.4924 1.3364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21415000 11458000 9956200 8245000 4960800 3284300 1844700 830370 1014300 6826900 4082400 2744600 4498000 1584900 2913100 0 0 0 0 0 0 28751 992 30234 150709;150710;150711;150712 151551;151552;151553;151554;151555;151556 151552 6 RLVGEIVR HERTFLAVKPDGVQRRLVGEIVRRFERKGF KPDGVQRRLVGEIVRRFERKGFKLVALKLV R R L V R R 0 2 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 8 1 940.5818 Q13232;H3BPD9;H3BMQ7;H3BRA8 Q13232 36 43 NME3 Nucleoside diphosphate kinase 3 yes no 2 0.0036311 107.29 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.3189 1.1245 20.848 5 Median 0.87796 0.92026 NaN 1 0 Median 1.3616 1.2025 9.4907 2 0 Median 0.97611 1.06 NaN 1 0 Median 1.7815 1.5952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22626000 10766000 11860000 12811000 6726200 6085200 7117800 2862300 4255500 1617300 715540 901770 1079700 461670 618020 0 0 0 0 0 0 28752 2798 30235 150713;150714;150715;150716;150717 151557;151558;151559;151560;151561 151558 5 RLVHQNSASDDAEASMISK DKDVFQKFYAKMLAKRLVHQNSASDDAEAS QNSASDDAEASMISKLKQACGFEYTSKLQR K R L S K L 3 1 1 2 0 1 1 0 1 1 1 1 1 0 0 4 0 0 0 1 0 0 19 1 2057.98 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 449 467 CUL1 Cullin-1 yes no 4 0.050397 8.6613 By MS/MS 1 1.3549 1.5398 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3549 1.5398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2846300 1354500 1491700 0 0 0 0 0 0 2846300 1354500 1491700 0 0 0 0 0 0 0 0 0 28753 256 30236 150718 151562;151563 151562 2 RLVMAESEK NRQVLEKEGESKELKRLVMAESEKSQKLEE ESKELKRLVMAESEKSQKLEERLRLLQAET K R L E K S 1 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 9 1 1061.5539 A0A087WY61;Q14980 Q14980 1253 1261 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.0016618 84.498 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.1297 1.1824 14.82 4 Median NaN NaN NaN 0 0 Median 1.5005 1.4452 NaN 1 0 Median 0.90264 1.0738 NaN 1 0 Median 1.3486 1.3019 NaN 1 0 Median 0.94628 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median 5930400 3014500 2916000 0 0 0 780460 341090 439370 1966000 1022700 943310 178200 97471 80725 3005700 1553200 1452600 0 0 0 28754 2905;77 30237 150719;150720;150721;150722 151564;151565 151565 2 RLVMSIR TVMDVKPVDYREYGRRLVMSIRRSALM___ VDYREYGRRLVMSIRRSALM__________ R R L I R R 0 2 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 7 1 873.52184 P27694;I3L4R8 P27694 605 611 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.0054531 98.997 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 1 1 2 1 2 1.2994 1.4102 37.062 9 Median 1.0529 1.0439 13.959 2 1 Median 0.76827 0.65503 NaN 1 0 Median 1.2994 1.4501 NaN 1 0 Median 1.947 1.8151 18.073 2 0 Median 0.99667 1.0871 NaN 1 0 Median 1.93 1.7001 26.438 2 0 Median 23807000 9789900 14017000 9625700 3779100 5846500 2578400 1594000 984380 4776900 1991300 2785600 2695400 980480 1714900 809880 330120 479750 3321200 1114900 2206300 28755 2156 30238 150723;150724;150725;150726;150727;150728;150729;150730;150731 151566;151567;151568 151566 3 RLVPDSDVR KTHPQYSRRFHKTLRRLVPDSDVRFLLSES FHKTLRRLVPDSDVRFLLSESGSGKGAAMV R R L V R F 0 2 0 2 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 1 1055.5724 P19367 P19367 433 441 HK1 Hexokinase-1 yes yes 2 0.001295 91.069 By MS/MS By MS/MS 1 2 1.0257 1.0754 7.8029 2 Median 0.91595 1.0176 NaN 1 0 Median 1.1486 1.1364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6278400 2995700 3282700 2783800 1464600 1319200 3494600 1531100 1963500 0 0 0 0 0 0 0 0 0 0 0 0 28756 2064 30239 150732;150733;150734 151569;151570;151571;151572 151569 4 RLVSDGNINSDR DANEEKINAVVETGRRLVSDGNINSDRIQE TGRRLVSDGNINSDRIQEKVDSIDDRHRKN R R L D R I 0 2 2 2 0 0 0 1 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 1 1344.6746 Q01082;A0A087WUZ3 Q01082 1234 1245 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 0.00033749 53.252 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.95304 0.99968 25.946 7 Median NaN NaN NaN 0 0 Median 1.4209 1.3823 37.231 2 0 Median 0.78304 0.98917 3.2983 2 0 Median 1.0257 0.92885 10.393 2 0 Median NaN NaN NaN 0 0 Median 0.92577 0.81255 NaN 1 1 Median 7557900 3991200 3566700 0 0 0 2268800 1092300 1176400 2984600 1829200 1155400 1131400 561370 570000 0 0 0 1173100 508280 664860 28757 2681 30240 150735;150736;150737;150738;150739;150740;150741;150742 151573;151574;151575;151576;151577;151578;151579 151576 7 RLVSDGNINSDRIQEK DANEEKINAVVETGRRLVSDGNINSDRIQE LVSDGNINSDRIQEKVDSIDDRHRKNRETA R R L E K V 0 2 2 2 0 1 1 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 16 2 1842.9548 Q01082;A0A087WUZ3 Q01082 1234 1249 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 3.7307E-05 68.413 By MS/MS By matching 1 1 0.83854 0.963 8.6759 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85206 1.0239 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82523 0.90569 NaN 1 0 Median NaN NaN NaN 0 0 Median 13185000 7102400 6082700 0 0 0 0 0 0 9511200 5121500 4389700 0 0 0 3673900 1980800 1693100 0 0 0 28758 2681 30241 150743;150744 151580;151581 151581 2 RLVTTGVLK KVGENADSQIKLSIKRLVTTGVLKQTKGVG IKLSIKRLVTTGVLKQTKGVGASGSFRLAK K R L L K Q 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 9 1 985.62842 P07305 P07305 74 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0087024 55.531 By matching By MS/MS By MS/MS 1 7 2 0.7899 0.85347 32.554 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78881 0.86625 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72621 0.79197 8.7657 7 0 Median 1.9509 1.7334 6.5585 2 0 Median 99732000 53016000 46716000 0 0 0 0 0 0 1762000 971880 790080 0 0 0 89619000 49174000 40445000 8350300 2869800 5480600 28759 1884 30242 150745;150746;150747;150748;150749;150750;150751;150752;150753;150754 151582;151583;151584;151585;151586;151587;151588 151586 7 RLVVFDAR CRECGYRIMYKKRTKRLVVFDAR_______ MYKKRTKRLVVFDAR_______________ K R L A R - 1 2 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 8 1 974.56615 P53803 P53803 51 58 POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4 yes yes 2 0.0034467 119.17 By MS/MS By matching 1 1 1.2702 1.226 16.008 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0081 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6003 1.373 NaN 1 0 Median 8735300 4280600 4454700 0 0 0 0 0 0 8090200 4004100 4086100 0 0 0 0 0 0 645050 276470 368580 28760 2475 30243 150755;150756 151589 151589 1 RLVVLATPQVSDSMR ALVLGSSLKQHRTTRRLVVLATPQVSDSMR RLVVLATPQVSDSMRKVLETVFDEVIMVDV R R L M R K 1 2 0 1 0 1 0 0 0 0 2 0 1 0 1 2 1 0 0 3 0 0 15 1 1670.9138 P46976;C9JQ42;G5E9W8 P46976 34 48 GYG1 Glycogenin-1 yes no 3 7.8671E-05 52.823 By MS/MS By MS/MS 1 1 1.176 1.1868 18.527 2 Median 1.245 1.3529 NaN 1 0 Median 1.1108 1.0411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12030000 4640100 7389700 7549300 2528100 5021200 4480500 2112000 2368500 0 0 0 0 0 0 0 0 0 0 0 0 28761 2351 30244 150757;150758 151590;151591 151591 1 RLWGDIYFNPK YADTFGDINYQEFAKRLWGDIYFNPKTRKF EFAKRLWGDIYFNPKTRKFTKKAPTSSSQR K R L P K T 0 1 1 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 0 0 0 11 1 1407.7299 Q15029 Q15029 342 352 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 0.00084926 66.435 By matching By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1 0.94449 0.97553 34.663 8 Median 1.936 1.8842 NaN 1 0 Median 1.0607 1.0181 38.475 2 0 Median 0.6513 0.74161 5.6595 2 0 Median 1.0331 0.99287 29.582 2 0 Median 1.0643 1.1815 NaN 1 0 Median NaN NaN NaN 0 0 Median 14269000 6305500 7963200 6115700 1973400 4142300 1715200 866980 848190 3976200 2242700 1733500 993050 509170 483880 1468600 713270 755330 0 0 0 28762 2917 30245 150759;150760;150761;150762;150763;150764;150765;150766 151592;151593;151594 151592 3 RLYPGSVYGR SSRQQRKAEIMESIKRLYPGSVYGRLIDLC MESIKRLYPGSVYGRLIDLCQPTQKKYQIA K R L G R L 0 2 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 2 1 0 0 10 1 1166.6196 Q14683;G8JLG1 Q14683 509 518 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.0058214 54.416 By MS/MS 1 1.0016 0.87914 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0016 0.87914 NaN 1 0 Median 7203200 3489800 3713300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7203200 3489800 3713300 28763 2889 30246 150767 151595 151595 1 RLYSLALHPNAFK QQQEKSPVNTKSLFKRLYSLALHPNAFKRL FKRLYSLALHPNAFKRLGASLAFNNIYREF K R L F K R 2 1 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 13 1 1528.8514 P78527 P78527 1062 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 3.9151E-05 82.705 By MS/MS By MS/MS By MS/MS 1 1 1 0.88851 0.93295 4.4591 3 Median 0.88851 0.93295 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78884 0.91755 NaN 1 0 Median 1.0716 0.99815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85437000 44973000 40464000 29842000 14670000 15171000 0 0 0 54511000 29782000 24729000 1083800 519790 564010 0 0 0 0 0 0 28764 2647 30247 150768;150769;150770 151596;151597;151598;151599;151600 151599 5 RLYWDDLKR SPVREEPGEDFPAARRLYWDDLKRKLSEKL DFPAARRLYWDDLKRKLSEKLDSTDFTGTI R R L K R K 0 2 0 2 0 0 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 0 9 2 1263.6724 P02786;G3V0E5 P02786 121 129 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 3 0.0002938 91.867 By MS/MS By MS/MS 1 1 1.2784 1.4167 1.8821 2 Median 1.3859 1.398 NaN 1 0 Median 1.1793 1.4357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9849300 4343200 5506100 7321000 3180700 4140300 2528300 1162500 1365800 0 0 0 0 0 0 0 0 0 0 0 0 28765 1836 30248 150771;150772 151601;151602 151601 2 RMAEAELVQEGK KRKGHILELLTEVTRRMAEAELVQEGKARK VTRRMAEAELVQEGKARKTNPEIQSTLRKR R R M G K A 2 1 0 0 0 1 3 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 12 1 1359.6816 P31944 P31944 212 223 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 0.013648 53.683 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 680790 680790 0 0 0 0 0 0 0 0 0 0 680790 680790 0 0 0 0 0 0 0 28766 2209 30249 150773;150774 151603;151604 151604 2 RMCEYECSLADNR R M N R 1 2 1 1 2 0 2 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 13 1 1702.6862 REV__Q52LJ0 yes yes 2 0.0024507 63.216 By MS/MS 1 0.46518 0.45831 NaN 1 Median 0.46518 0.45831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34862000 21667000 13195000 34862000 21667000 13195000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 28767 4543 30250 150775 151605 151605 1 RMDAPASAAAVR PPRVASVLGTMEMGRRMDAPASAAAVRAFL MGRRMDAPASAAAVRAFLERGHTELDTAFM R R M V R A 5 2 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 12 1 1214.619 H3BLU7;O43488 H3BLU7 40 51 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 3 0.00013916 74.392 By MS/MS By MS/MS 1 1 0.87124 0.86727 34.523 2 Median 0.6311 0.67942 NaN 1 0 Median 1.2027 1.1071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5061700 2850000 2211600 2946300 1872600 1073700 2115300 977420 1137900 0 0 0 0 0 0 0 0 0 0 0 0 28768 1206 30251 150776;150777 151606;151607;151608 151606 3 RMDEISDHAK DDDWGEDTTEEAQRRRMDEISDHAKVLTLS EAQRRRMDEISDHAKVLTLSDDLERTIEER R R M A K V 1 1 0 2 0 0 1 0 1 1 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1200.5557 P55010 P55010 215 224 EIF5 Eukaryotic translation initiation factor 5 yes yes 3 0.047109 15.202 By matching By MS/MS By matching By matching 1 1 1 1 1.2376 1.1689 10.48 4 Median 1.3746 1.4074 NaN 1 0 Median 1.2186 1.1093 NaN 1 0 Median 1.1395 1.1583 NaN 1 0 Median 1.257 1.1795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1130000 498130 631850 321300 136540 184750 438030 198020 240010 143810 61515 82292 226850 102050 124800 0 0 0 0 0 0 28769 2489 30252 150778;150779;150780;150781 151609;151610 151610 2 RMEEEQHHWDDR WRMEMRRYEEDMYWRRMEEEQHHWDDRRRM YWRRMEEEQHHWDDRRRMPDGGYPHGPPGP R R M D R R 0 2 0 2 0 1 3 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 12 1 1666.6907 Q96KR1 Q96KR1 670 681 ZFR Zinc finger RNA-binding protein yes yes 4 0.0077531 27.409 By matching By MS/MS 1 1 1.1483 1.2435 11.341 2 Median NaN NaN NaN 0 0 Median 1.1904 1.1476 NaN 1 0 Median 1.1078 1.3473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1137400 561290 576060 0 0 0 610750 309800 300960 526600 251490 275100 0 0 0 0 0 0 0 0 0 28770 3697 30253 150782;150783 151611 151611 1 RMEELHNQEMQK NLLRQDLMRRQEELRRMEELHNQEMQKRKE ELRRMEELHNQEMQKRKEMQLRQEEERRRR R R M Q K R 0 1 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 12 1 1571.7184 P23246;H0Y9K7 P23246 548 559 SFPQ Splicing factor, proline- and glutamine-rich yes no 2;3 0.00014237 83.31 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 7 7 4 3 1.2331 1.2146 22.257 26 Median 1.3937 1.4271 20.154 2 0 Median 1.1973 1.1865 58.335 3 0 Median 1.0357 1.148 7.732 7 0 Median 1.4184 1.3385 9.3805 7 0 Median 1.0715 1.1817 8.4472 4 0 Median 1.3574 1.1827 4.4425 3 0 Median 126380000 57711000 68667000 991040 359260 631780 16219000 7406800 8811900 54927000 26343000 28584000 25833000 10573000 15261000 24624000 11542000 13081000 3783200 1486300 2296900 28771 2107 30254 150784;150785;150786;150787;150788;150789;150790;150791;150792;150793;150794;150795;150796;150797;150798;150799;150800;150801;150802;150803;150804;150805;150806;150807;150808;150809 151612;151613;151614;151615;151616;151617;151618;151619;151620;151621;151622;151623;151624;151625;151626;151627;151628;151629;151630;151631;151632;151633;151634 151621 23 RMEELHNQEMQKR NLLRQDLMRRQEELRRMEELHNQEMQKRKE LRRMEELHNQEMQKRKEMQLRQEEERRRRE R R M K R K 0 2 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 13 2 1727.8196 P23246;H0Y9K7 P23246 548 560 SFPQ Splicing factor, proline- and glutamine-rich yes no 4 0.0067782 34.179 By MS/MS By MS/MS By matching 1 1 1 0.98621 1.1537 2.5714 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97629 1.1487 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.98621 1.1537 NaN 1 0 Median 1.2704 1.1012 NaN 1 0 Median 2645200 1243200 1402100 0 0 0 0 0 0 1310900 638800 672120 0 0 0 1068700 506190 562480 265650 98164 167480 28772 2107 30255 150810;150811;150812 151635;151636;151637 151636 3 RMEELHNQEVQK MLMRQDLMRRQEELRRMEELHNQEVQKRKQ ELRRMEELHNQEVQKRKQLELRQEEERRRR R R M Q K R 0 1 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 12 1 1539.7464 Q15233;H7C367;C9JYS8 Q15233 325 336 NONO Non-POU domain-containing octamer-binding protein yes no 3 6.5302E-06 96.745 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 3 1.3593 1.2701 42.814 15 Median NaN NaN NaN 0 0 Median 1.2464 1.1368 1.041 2 0 Median 1.3147 1.4106 25.988 4 0 Median 1.4164 1.3436 7.2001 4 0 Median 0.54557 0.56587 99.339 2 0 Median 1.4388 1.2747 3.5787 3 0 Median 85149000 38670000 46479000 0 0 0 17561000 7646000 9914700 33652000 15852000 17801000 12768000 5233900 7534300 16346000 7961000 8384600 4822100 1977000 2845100 28773 2935 30256 150813;150814;150815;150816;150817;150818;150819;150820;150821;150822;150823;150824;150825;150826;150827 151638;151639;151640;151641;151642;151643;151644;151645;151646;151647;151648;151649;151650;151651 151638 14 RMEELHNQEVQKR MLMRQDLMRRQEELRRMEELHNQEVQKRKQ LRRMEELHNQEVQKRKQLELRQEEERRRRE R R M K R K 0 2 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 13 2 1695.8475 Q15233;H7C367;C9JYS8 Q15233 325 337 NONO Non-POU domain-containing octamer-binding protein yes no 3;4 1.6646E-05 87.498 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 2 7 2 1.0336 1.1471 13.108 18 Median 1.0362 1.046 NaN 1 0 Median 0.90655 1.0873 13.506 2 1 Median 1.0091 1.1255 16.378 4 0 Median 1.361 1.4306 12.306 2 0 Median 1.0109 1.1376 8.2929 7 0 Median 1.2454 1.0805 10.948 2 0 Median 17107000 8325700 8781300 271230 138210 133020 990310 580640 409670 3823400 1794400 2029000 1362700 518610 844120 8534600 4314500 4220100 2124700 979400 1145300 28774 2935 30257 150828;150829;150830;150831;150832;150833;150834;150835;150836;150837;150838;150839;150840;150841;150842;150843;150844;150845 151652;151653;151654;151655;151656;151657;151658;151659;151660;151661;151662;151663;151664;151665;151666;151667;151668 151657 17 RMEIQEAIK LLAFERKLDQTIARKRMEIQEAIKKPLTQK QTIARKRMEIQEAIKKPLTQKRKLRIYISN K R M I K K 1 1 0 0 0 1 2 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 9 1 1116.5961 J3KMX2;B9EGA3;Q92925 J3KMX2 102 110 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2 0.028892 39.022 By MS/MS 1 0.67453 0.74941 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67453 0.74941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1469000 866390 602620 0 0 0 0 0 0 1469000 866390 602620 0 0 0 0 0 0 0 0 0 28775 655 30258 150846 151669 151669 1 RMENLVAYAK QAIFPTPDPAALKDRRMENLVAYAKKVEGD ALKDRRMENLVAYAKKVEGDMYESANSRDE R R M A K K 2 1 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 10 1 1193.6227 Q92793;I3L466;I3L0Q1 Q92793 625 634 CREBBP CREB-binding protein yes no 2 0.0017495 103.55 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28776 3557 30259 150847 151670 151670 1 RMESSINHISQTVDIHK NNVLQLLDIQASQLRRMESSINHISQTVDI ESSINHISQTVDIHKEKVARREIGILTTNK R R M H K E 0 1 1 1 0 1 1 0 2 3 0 1 1 0 0 3 1 0 0 1 0 0 17 1 1994.0004 B6VEX4;A0A0A0MRT6;Q8IZP0;E9PEZ7;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9 B6VEX4 85 101 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 4 5.1309E-06 64.507 By MS/MS By MS/MS 1 1 1.0456 1.0701 19.534 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83508 0.93203 NaN 1 0 Median 1.3093 1.2286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5829900 2639600 3190300 0 0 0 0 0 0 3467800 1712900 1754900 2362100 926640 1435500 0 0 0 0 0 0 28777 171 30260 150848;150849 151671;151672;151673 151673 3 RMFGGPGTASRPSSSR ______________________________ MFGGPGTASRPSSSRSYVTTSTRTYSLGSA R R M S R S 1 3 0 0 0 0 0 3 0 0 0 0 1 1 2 4 1 0 0 0 0 0 16 2 1649.8056 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 13 28 VIM Vimentin yes no 3;4 0.013155 33.265 By MS/MS By MS/MS 2 2 0.73474 0.86754 18.869 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79977 1.0116 3.7576 2 0 Median 0.69432 0.73467 5.5335 2 1 Median 11690000 6684300 5005300 0 0 0 0 0 0 0 0 0 0 0 0 7666200 4445400 3220900 4023400 2238900 1784400 28778 1907 30261 150850;150851;150852;150853 151674;151675;151676 151676 3 RMGESDDSILR FNGQFKTYAICGAIRRMGESDDSILRLAKA GAIRRMGESDDSILRLAKADGIVSK_____ R R M L R L 0 2 0 2 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 11 1 1277.6034 Q8WVC2;P63220 Q8WVC2 61 71 RPS21 40S ribosomal protein S21 yes no 2;3 4.4895E-05 76.655 By MS/MS By MS/MS By MS/MS 2 2 2 1.1074 1.06 11.572 5 Median 1.0847 1.0822 2.9319 2 0 Median 1.324 1.1289 14.523 2 0 Median 0.83904 0.91118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6085900 2858200 3227600 3339400 1547000 1792400 2384500 1144000 1240400 361950 167210 194740 0 0 0 0 0 0 0 0 0 28779 2623 30262 150854;150855;150856;150857;150858;150859 151677;151678;151679;151680;151681 151677 5 RMGHAGAIIAGGK PVVSFIAGLTAPPGRRMGHAGAIIAGGKGG GRRMGHAGAIIAGGKGGAKEKISALQSAGV R R M G K G 3 1 0 0 0 0 0 4 1 2 0 1 1 0 0 0 0 0 0 0 0 0 13 1 1237.6714 P53597 P53597 296 308 SUCLG1 Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial yes yes 3 0.0059287 28.361 By MS/MS By MS/MS 1 1 1.2142 1.162 24.991 2 Median 0.98737 0.9738 NaN 1 0 Median 1.4931 1.3866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1421200 693080 728120 918950 487570 431380 502260 205510 296750 0 0 0 0 0 0 0 0 0 0 0 0 28780 2469 30263 150860;150861 151682;151683;151684 151683 3 RMHVQLSTSR VEAIRGLDNTEFQGKRMHVQLSTSRLRTAP EFQGKRMHVQLSTSRLRTAPGMGDQSGCYR K R M S R L 0 2 0 0 0 1 0 0 1 0 1 0 1 0 0 2 1 0 0 1 0 0 10 1 1213.635 Q9BQ04;Q9BWF3;E9PB51 Q9BWF3 140 149 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 3 0.00031432 66.595 By MS/MS By MS/MS By MS/MS 1 3 1 1.1842 1.246 19.936 5 Median 1.1842 1.246 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1768 1.2061 26.182 3 1 Median NaN NaN NaN 0 0 Median 1.1936 1.274 NaN 1 0 Median NaN NaN NaN 0 0 Median 5758200 2539300 3218900 497770 211740 286020 0 0 0 2422100 1190700 1231400 0 0 0 2838400 1136900 1701500 0 0 0 28781 3870;3780 30264 150862;150863;150864;150865;150866 151685;151686;151687;151688;151689;151690;151691 151691 7 RMQEMIAR MNKDQILLEKEAELRRMQEMIARMQAQMQM EKEAELRRMQEMIARMQAQMQMQMQGGDGD R R M A R M 1 2 0 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 8 1 1033.5161 Q15019;B5MCX3;H7C2Y0 Q15019 331 338 SEPT2 Septin-2 yes no 2 0.0037333 136.8 By MS/MS By MS/MS By matching 1 1 1 1.2298 1.0825 27.898 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0549 1.0812 NaN 1 0 Median 1.2298 1.0825 NaN 1 0 Median 1.6433 1.754 NaN 1 0 Median NaN NaN NaN 0 0 Median 17365000 8257000 9108400 0 0 0 0 0 0 11132000 5447900 5684300 5132200 2288700 2843500 1101000 520380 580660 0 0 0 28782 2914 30265 150867;150868;150869 151692;151693 151692 2 RMQNDTAENETTEKEEK FDPTITDASLSLPSRRMQNDTAENETTEKE QNDTAENETTEKEEKSESRQERYEIEETET R R M E K S 1 1 2 1 0 1 5 0 0 0 0 2 1 0 0 0 3 0 0 0 0 0 17 2 2051.9066 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 130 146 CALD1 Caldesmon yes no 3 0.069114 9.4152 By matching By MS/MS 1 1 0.88918 0.99656 16.105 2 Median 0.8074 0.88929 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97924 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1116000 597390 518630 90707 47708 42999 0 0 0 1025300 549680 475630 0 0 0 0 0 0 0 0 0 28783 928 30266 150870;150871 151694 151694 1 RMSLIEEEGSKR DRIVALFPKDVDRLRRMSLIEEEGSKRINM RLRRMSLIEEEGSKRINMAHLCIVGSHAVN R R M K R I 0 2 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 0 0 0 0 12 2 1433.7297 P06737;E9PK47 P06737 428 439 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 3 0.0004079 73.466 By MS/MS By MS/MS 1 1 0.99715 1.1418 6.2682 2 Median 1.0142 1.0923 NaN 1 0 Median 0.98041 1.1936 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4217100 2107300 2109800 2268200 1152400 1115800 1948900 954880 994030 0 0 0 0 0 0 0 0 0 0 0 0 28784 1874 30267 150872;150873 151695;151696;151697 151695 3 RMTAAQPSETTVGNMVR SNAGELMELIRREGRRMTAAQPSETTVGNM TAAQPSETTVGNMVRRVLKIIREEYGRLHG R R M V R R 2 2 1 0 0 1 1 1 0 0 0 0 2 0 1 1 3 0 0 2 0 0 17 1 1847.8982 P49770;H0YJJ8;G3V5E5 P49770 67 83 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 3 4.283E-05 48.053 By MS/MS By matching 1 1 1.0539 1.0143 23.645 2 Median 1.1394 1.1989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97483 0.85812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4448900 2205900 2243000 3364200 1732200 1632000 0 0 0 0 0 0 1084700 473670 611020 0 0 0 0 0 0 28785 2398 30268 150874;150875 151698;151699 151699 2 RMTQNPNYYNLQGISHR KQDAVDYLTWTFLYRRMTQNPNYYNLQGIS TQNPNYYNLQGISHRHLSDHLSELVEQTLS R R M H R H 0 2 3 0 0 2 0 1 1 1 1 0 1 0 1 1 1 0 2 0 0 0 17 1 2091.0068 O75643 O75643 1763 1779 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 5.4529E-11 101.78 By matching By MS/MS 1 1 0.92937 1.0802 29.837 2 Median 0.81796 0.87473 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0559 1.3339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18958000 8324500 10634000 2368500 1180000 1188500 0 0 0 16590000 7144500 9445300 0 0 0 0 0 0 0 0 0 28786 1688 30269 150876;150877 151700 151700 1 RMVVPAALK LKVFDGIPPPYDKKKRMVVPAALKVVRLKP PYDKKKRMVVPAALKVVRLKPTRKFAYLGR K R M L K V 2 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 9 1 983.59501 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 117 125 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.0026536 76.774 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.1456 1.1616 11.148 4 Median 1.0269 1.0726 NaN 1 0 Median 1.1042 1.0232 NaN 1 0 Median 1.2368 1.2755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1885 1.258 NaN 1 0 Median NaN NaN NaN 0 0 Median 29674000 14331000 15342000 12839000 6525600 6313400 6580200 3025900 3554300 3048200 1277600 1770500 0 0 0 7206200 3502100 3704200 0 0 0 28787 2288 30270 150878;150879;150880;150881 151701;151702;151703;151704 151702 4 RNAEFLTCNIPTSNASNNMVTTEK NSVPETAPAAIPETKRNAEFLTCNIPTSNA IPTSNASNNMVTTEKVENGQEPVIKLENRQ K R N E K V 2 1 5 0 1 0 2 0 0 1 1 1 1 1 1 2 4 0 0 1 0 0 24 1 2711.2643 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 385 408 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 0.07293 2.4404 By MS/MS 1 0.33326 0.39561 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33326 0.39561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 932470 724250 208220 0 0 0 0 0 0 932470 724250 208220 0 0 0 0 0 0 0 0 0 28788 2498 30271 150882 151705 151705 1 RNDHDDDEDEEVISK TDVMVRCLKLLKEFKRNDHDDDEDEEVISK RNDHDDDEDEEVISKTVPPVDIVFERDMLT K R N S K T 0 1 1 5 0 0 3 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 15 1 1814.7555 Q12789 Q12789 341 355 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.001597 33.842 By MS/MS 2 0.65808 0.76949 28.173 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65808 0.76949 28.173 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2924500 1531400 1393200 0 0 0 0 0 0 2924500 1531400 1393200 0 0 0 0 0 0 0 0 0 28789 2758 30272 150883;150884 151706;151707 151707 2 RNEELKEVEEER KIQERWLQDNLTLRKRNEELKEVEEERKQH LRKRNEELKEVEEERKQHLKEMGQMQVLQM K R N E R K 0 2 1 0 0 0 6 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 12 2 1558.7587 Q92878;A0A1W2PQ90 Q92878 1027 1038 RAD50 DNA repair protein RAD50 yes no 3 0.00022671 62.042 By MS/MS By MS/MS 1 1 1.0292 1.0937 13.499 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88186 0.99415 NaN 1 0 Median 1.2012 1.2033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2236500 1011200 1225400 0 0 0 0 0 0 1579000 746430 832580 657540 264740 392790 0 0 0 0 0 0 28790 3561 30273 150885;150886 151708;151709;151710 151708 3 RNEFLGELQK PDSKPFSLQETYEAKRNEFLGELQKKEEEM TYEAKRNEFLGELQKKEEEMRQMFVMRVKE K R N Q K K 0 1 1 0 0 1 2 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 10 1 1232.6513 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141 D6RGI3 327 336 SEPT11;SEPT6 Septin-11;Septin-6 no no 2;3 6.5327E-07 160.75 By matching By matching By MS/MS By MS/MS By matching 1 1 5 4 1 1.1219 1.1076 16.782 11 Median 0.9174 0.91 NaN 1 0 Median 1.1711 1.0702 NaN 1 0 Median 0.98511 1.0502 7.8664 4 0 Median 1.4316 1.3434 5.9977 4 0 Median 0.80774 0.83939 NaN 1 0 Median NaN NaN NaN 0 0 Median 231560000 106480000 125080000 3952600 2010200 1942400 1916700 786270 1130400 114490000 54316000 60178000 108580000 48087000 60493000 2613200 1281000 1332200 0 0 0 28791 822;573 30274 150887;150888;150889;150890;150891;150892;150893;150894;150895;150896;150897;150898 151711;151712;151713;151714;151715;151716;151717;151718;151719;151720;151721;151722;151723;151724;151725 151723 15 RNEFLGELQKK PDSKPFSLQETYEAKRNEFLGELQKKEEEM YEAKRNEFLGELQKKEEEMRQMFVMRVKEK K R N K K E 0 1 1 0 0 1 2 1 0 0 2 2 0 1 0 0 0 0 0 0 0 0 11 2 1360.7463 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141 D6RGI3 327 337 SEPT11;SEPT6 Septin-11;Septin-6 no no 3 0.0006941 55.261 By MS/MS 1 1.2685 1.3848 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2685 1.3848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16025000 6879400 9146000 0 0 0 0 0 0 0 0 0 16025000 6879400 9146000 0 0 0 0 0 0 28792 822;573 30275 150899 151726 151726 1 RNELVIR QFHDVAGDIFHQQCKRNELVIRVQPNEAVY DIFHQQCKRNELVIRVQPNEAVYTKMMTKK K R N I R V 0 2 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 1 898.53485 P11413 P11413 387 393 G6PD Glucose-6-phosphate 1-dehydrogenase yes yes 2 0.025017 65.252 By MS/MS 2 0.82949 0.75069 3.9865 2 Median NaN NaN NaN 0 0 Median 0.82949 0.75069 3.9865 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431600 1775700 1655900 0 0 0 3431600 1775700 1655900 0 0 0 0 0 0 0 0 0 0 0 0 28793 1964 30276 150900;150901 151727 151727 1 RNENSEVDTSAGSGSAPSVLHQR RSPGKVKDISIDVERRNENSEVDTSAGSGS TSAGSGSAPSVLHQRNGQTEDVATGPRRAE R R N Q R N 2 2 2 1 0 1 2 2 1 0 1 0 0 0 1 5 1 0 0 2 0 0 23 1 2397.1269 Q8NFC6 Q8NFC6 1476 1498 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3;4 5.5782E-12 57.826 By MS/MS By MS/MS 1 1 0.7007 0.70911 13.955 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58461 0.64248 NaN 1 0 Median 0.83984 0.78265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6907400 4134500 2772900 0 0 0 0 0 0 5646800 3402600 2244200 1260600 731870 528690 0 0 0 0 0 0 28794 3434 30277 150902;150903 151728;151729;151730 151730 3 RNFAELK KKEVPAVPETLKKKRRNFAELKIKRLRKKF PETLKKKRRNFAELKIKRLRKKFAQKMLRK R R N L K I 1 1 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 876.48175 P18124 P18124 23 29 RPL7 60S ribosomal protein L7 yes yes 2 0.035578 54.787 By MS/MS By MS/MS By matching By matching By matching By MS/MS 1 1 2 2 1 2 1.25 1.1618 25.822 9 Median 1.5822 1.5792 NaN 1 0 Median 1.5537 1.3951 NaN 1 0 Median 1.1934 1.2681 12.378 2 0 Median 1.1907 1.0883 42.181 2 0 Median 0.7468 0.80142 NaN 1 0 Median 1.1465 1.0356 15.736 2 0 Median 16445000 7140500 9305000 5376000 2077300 3298700 5028400 2494300 2534100 1118300 453020 665260 2455400 928280 1527100 823480 465220 358260 1643900 722370 921500 28795 2056 30278 150904;150905;150906;150907;150908;150909;150910;150911;150912 151731;151732;151733 151731 3 RNFILDQTNVSAAAQR PQCLGKFIEIAARKKRNFILDQTNVSAAAQ NFILDQTNVSAAAQRRKMCLFAGFQRKAVV K R N Q R R 3 2 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 1 1802.9387 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 575 590 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 1.4965E-46 220.85 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 7 4 0.96954 1.0487 22.129 17 Median 0.91405 1.0155 13.763 2 0 Median 1.2021 1.1589 NaN 1 0 Median 1.0079 1.1647 5.4922 2 0 Median 1.2182 1.1926 NaN 1 0 Median 0.86598 0.9368 17.517 7 0 Median 0.91889 0.81028 27.91 4 0 Median 167530000 82871000 84655000 16255000 9062900 7192000 2081700 907670 1174000 39981000 20024000 19957000 5576100 2525900 3050200 98478000 47889000 50589000 5154900 2461500 2693400 28796 2680 30279 150913;150914;150915;150916;150917;150918;150919;150920;150921;150922;150923;150924;150925;150926;150927;150928;150929 151734;151735;151736;151737;151738;151739;151740;151741;151742;151743;151744;151745;151746;151747 151739 13 RNIDAGEMVIEYAGNVIR GVYRSPIHGRGLFCKRNIDAGEMVIEYAGN DAGEMVIEYAGNVIRSIQTDKREKYYDSKG K R N I R S 2 2 2 1 0 0 2 2 0 3 0 0 1 0 0 0 0 0 1 2 0 0 18 1 2019.0208 Q03164 Q03164 3847 3864 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 0.063314 6.2738 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.35436 0.3937 14.227 5 Median 0.35436 0.3937 NaN 1 0 Median 0.40588 0.40157 NaN 1 0 Median 0.35823 0.41393 NaN 1 0 Median 0.32833 0.29093 NaN 1 0 Median 0.33842 0.3677 NaN 1 0 Median NaN NaN NaN 0 0 Median 49313000 34393000 14920000 11586000 8209000 3376500 3921100 2565300 1355700 23824000 17095000 6728600 3224800 2078100 1146600 6757600 4444700 2312900 0 0 0 28797 2708 30280 150930;150931;150932;150933;150934 151748;151749 151749 2 RNIPMLFVR EIDEETYEEIYKSTKRNIPMLFVRGDGVVL IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ K R N V R G 0 2 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 9 1 1144.6539 P62310 P62310 80 88 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 0.0052222 63.48 By MS/MS By MS/MS 1 1 1.0286 1.0707 14.454 2 Median 0.96886 0.96667 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.092 1.1859 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12188000 6178500 6009100 9525800 4993300 4532500 0 0 0 2661700 1185200 1476600 0 0 0 0 0 0 0 0 0 28798 2583 30281 150935;150936 151750;151751 151750 2 RNKLDHYAIIK RLRRQPKYPRKSAPRRNKLDHYAIIKFPLT SAPRRNKLDHYAIIKFPLTTESAMKKIEDN R R N I K F 1 1 1 1 0 0 0 0 1 2 1 2 0 0 0 0 0 0 1 0 0 0 11 2 1369.783 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 70 80 RPL23A 60S ribosomal protein L23a yes no 2;3 0.00066368 73.233 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 3 1.0685 1.0836 17.015 9 Median 1.083 1.1532 1.9059 2 0 Median 1.0119 0.87734 0.31995 2 0 Median 1.2314 1.3787 NaN 1 0 Median 1.1868 0.97896 NaN 1 0 Median 0.91779 1.0836 16.144 3 0 Median NaN NaN NaN 0 0 Median 46741000 21317000 25424000 17839000 7807400 10031000 8351100 3736900 4614200 6366300 2726700 3639500 4013100 1751500 2261600 10172000 5294500 4877400 0 0 0 28799 544 30282 150937;150938;150939;150940;150941;150942;150943;150944;150945 151752;151753;151754;151755;151756;151757 151756 6 RNLADCLR NGYELSPTAAANFTRRNLADCLRSRTPYHV AAANFTRRNLADCLRSRTPYHVNLLLAGYD R R N L R S 1 2 1 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 1016.5185 P49721 P49721 86 93 PSMB2 Proteasome subunit beta type-2 yes yes 2 0.009263 70.919 By MS/MS 1 1.2566 1.1496 NaN 1 Median NaN NaN NaN 0 0 Median 1.2566 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1210400 561390 649040 0 0 0 1210400 561390 649040 0 0 0 0 0 0 0 0 0 0 0 0 28800 2392 30283 150946 151758 151758 1 RNLDFQDVLDK TCHGAGRALSRAKSRRNLDFQDVLDKLADM AKSRRNLDFQDVLDKLADMGIAIRVASPKL R R N D K L 0 1 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 1 1361.6939 Q9Y3I0 Q9Y3I0 441 451 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 0.00032385 73.985 By matching By MS/MS By MS/MS 1 1 2 1.1183 1.1345 17.857 4 Median NaN NaN NaN 0 0 Median 1.0688 0.96825 NaN 1 0 Median 1.0507 1.1722 NaN 1 0 Median 1.3594 1.2756 21.202 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5893200 2652900 3240300 0 0 0 146630 83036 63589 3166900 1511900 1655100 2579600 1058000 1521600 0 0 0 0 0 0 28801 4430 30284 150947;150948;150949;150950 151759;151760;151761 151761 3 RNLDIERPTYTNLNR CAFMVDNEAIYDICRRNLDIERPTYTNLNR RNLDIERPTYTNLNRLISQIVSSITASLRF R R N N R L 0 3 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 15 2 1873.9759 Q9BQE3;F5H5D3;F8VVB9;P68363;P68366;C9JDS9;Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 P68363 215 229 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 3;4 5.0332E-27 198.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 2 3 0.94109 0.97803 40.461 17 Median 0.81622 1.0295 8.1402 2 0 Median 0.94109 0.9758 17.375 3 1 Median 0.94356 1.1325 35.879 3 0 Plateau 0.94745 1.7552 68.188 4 0 Linear 1.226 1.586 36.768 2 0 Median 0.97074 1.0272 7.6887 3 0 Median 396450000 198390000 198070000 211860000 109770000 102090000 42825000 22461000 20363000 44329000 22562000 21767000 66196000 30503000 35693000 14777000 5604600 9172700 16465000 7483600 8981900 28802 2633;3212;1034 30285 150951;150952;150953;150954;150955;150956;150957;150958;150959;150960;150961;150962;150963;150964;150965;150966;150967 151762;151763;151764;151765;151766;151767;151768;151769;151770;151771;151772;151773;151774;151775;151776;151777;151778;151779;151780;151781;151782 151779 21 RNLGSINTELQDVQR FIQKTKKLYIDSCARRNLGSINTELQDVQR RNLGSINTELQDVQRIMVANIEEVLQRGEA R R N Q R I 0 2 2 1 0 2 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 15 1 1741.9071 O75396;A0A087X1A9 O75396 133 147 SEC22B Vesicle-trafficking protein SEC22b yes no 2;3 3.2258E-10 114.31 By MS/MS By MS/MS By matching 2 1 1 1.2844 1.2611 7.6123 4 Median 1.1601 1.24 6.7467 2 0 Median 1.4399 1.2228 NaN 1 0 Median 1.3559 1.4058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43501000 18733000 24768000 34443000 15596000 18847000 5668700 2024500 3644200 3390100 1113000 2277100 0 0 0 0 0 0 0 0 0 28803 1669 30286 150968;150969;150970;150971 151783;151784;151785;151786 151784 3 RNLLSLGHNNIVR RTISLCCWDSRTAERRNLLSLGHNNIVRCI ERRNLLSLGHNNIVRCIVHSPTNPGFMTCS R R N V R C 0 2 3 0 0 0 0 1 1 1 3 0 0 0 0 1 0 0 0 1 0 0 13 1 1504.8586 Q05048 Q05048 389 401 CSTF1 Cleavage stimulation factor subunit 1 yes yes 3 2.4871E-07 139.89 By MS/MS By MS/MS 1 1 1.1322 1.1378 10.852 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97328 1.0538 NaN 1 0 Median 1.3171 1.2286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32192000 14676000 17516000 0 0 0 0 0 0 13712000 6858500 6853700 18480000 7817800 10662000 0 0 0 0 0 0 28804 2716 30287 150972;150973 151787;151788;151789;151790 151787 4 RNLMALAR KVVTYGMANLLTGPKRNLMALARTWWNQFS NLLTGPKRNLMALARTWWNQFSVTALQLLQ K R N A R T 2 2 1 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 1 943.53855 Q99536;K7ESA3 Q99536 296 303 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.01066 66.799 By MS/MS By MS/MS 2 1 1.8864 1.905 28.254 3 Median 1.4625 1.5075 33.096 2 0 Median 2.1235 1.9831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10534000 3967900 6566500 6572500 2535600 4037000 3961900 1432300 2529600 0 0 0 0 0 0 0 0 0 0 0 0 28805 3750 30288 150974;150975;150976 151791;151792;151793 151793 3 RNNVVITVTQR KVTRADGNQLTLEERRNNVVITVTQRNYTE LEERRNNVVITVTQRNYTEYWSGSNSGNQK R R N Q R N 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 2 0 0 3 0 0 11 1 1298.7419 Q6YHK3 Q6YHK3 386 396 CD109 CD109 antigen yes yes 3 0.013751 36.32 By MS/MS By MS/MS 1 1 1.3737 1.486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3737 1.486 NaN 1 0 Median NaN NaN NaN 0 0 Median 1603700 730290 873400 0 0 0 0 0 0 0 0 0 0 0 0 1603700 730290 873400 0 0 0 28806 3193 30289 150977;150978 151794;151795 151795 1 RNPDTQWITKPVHK FFEVILIDPFHKAIRRNPDTQWITKPVHKH RRNPDTQWITKPVHKHREMRGLTSAGRKSR R R N H K H 0 1 1 1 0 1 0 0 1 1 0 2 0 0 2 0 2 1 0 1 0 0 14 2 1718.9216 P61313;A0A2R8YEM3;E7EQV9;E7ENU7 P61313 144 157 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 3;4 2.3935E-08 100.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 3 3 0.88703 0.88702 30.542 15 Median 0.81298 0.86315 32.952 2 2 Median 0.80306 0.75641 9.6177 4 0 Median 0.79225 0.88702 NaN 1 0 Median 1.0122 0.94841 21.681 2 0 Median 1.2174 1.2903 34.554 3 0 Median 1.0139 0.95101 30.168 3 0 Median 69151000 34463000 34688000 6252000 3332900 2919100 13231000 7189500 6041100 4240500 2094600 2145900 6409000 2959200 3449800 29592000 14448000 15145000 9426500 4438800 4987700 28807 2555 30290 150979;150980;150981;150982;150983;150984;150985;150986;150987;150988;150989;150990;150991;150992;150993 151796;151797;151798;151799;151800;151801;151802;151803;151804;151805;151806;151807;151808;151809;151810;151811;151812 151805 17 RNQDLAPNSAEQASILSLVTK KPAPDETSFSEALLKRNQDLAPNSAEQASI PNSAEQASILSLVTKINNVIDNLIVAPGTF K R N T K I 3 1 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 21 1 2254.1917 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 22 42 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 5.9601E-18 104.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 3 2 0.95317 0.93918 14.358 11 Median 1.1521 1.2342 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88523 1.0078 18.941 4 2 Median 1.0638 0.93073 NaN 1 0 Median 0.81197 0.89138 8.4843 3 0 Median 1.05 0.94616 6.4112 2 0 Median 122580000 62481000 60104000 5030700 2630200 2400600 0 0 0 57983000 29669000 28313000 2045300 975280 1070000 54823000 27975000 26848000 2702600 1230900 1471700 28808 609 30291 150994;150995;150996;150997;150998;150999;151000;151001;151002;151003;151004 151813;151814;151815;151816;151817;151818;151819;151820;151821;151822;151823;151824 151816 12 RNTIQFTHTQIEAIR HVIPNRGPYPYNQPKRNTIQFTHTQIEAIR RNTIQFTHTQIEAIRAGMQPGLTMVVGPPG K R N I R A 1 2 1 0 0 2 1 0 1 3 0 0 0 1 0 0 3 0 0 0 0 0 15 1 1826.9751 O60306 O60306 797 811 AQR Intron-binding protein aquarius yes yes 3 9.455E-07 88.73 By MS/MS By matching By MS/MS 1 1 1 0.97382 1.0321 6.4469 3 Median 1.0448 1.1173 NaN 1 0 Median 0.97382 0.9834 NaN 1 0 Median 0.84864 1.0321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38541000 19352000 19189000 12035000 5151400 6883800 4336000 2074300 2261700 22170000 12127000 10043000 0 0 0 0 0 0 0 0 0 28809 1611 30292 151005;151006;151007 151825;151826;151827 151825 3 RNYAHALDGLYR NVRMQNDVKLPQGQRRNYAHALDGLYRVAR GQRRNYAHALDGLYRVAREEGLRRLFSGAT R R N Y R V 2 2 1 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 2 0 0 0 12 1 1447.732 B4DLN1 B4DLN1 294 305 no no 3 0.00089194 65.179 By MS/MS 1 1.0459 1.1365 NaN 1 Median 1.0459 1.1365 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4206200 1702300 2503900 4206200 1702300 2503900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28810 598 30293 151008 151828 151828 1 RPAEDMEEEQAFK EETFPNTETNGEFGKRPAEDMEEEQAFKRS GKRPAEDMEEEQAFKRSRNTDEMVELRILL K R P F K R 2 1 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 13 1 1578.6984 P61978;S4R457;Q5T6W2 P61978 22 34 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 1.2955E-66 249.29 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 6 4 1 3 0.76889 1.7652 43.414 17 Linear NaN NaN NaN 0 0 Median 0.83199 0.75956 27.163 3 0 Median 0.71864 0.78079 11.33 6 0 Median 0.99919 0.93762 92.321 4 1 Median 0.81871 0.84906 NaN 1 0 Median 0.76407 0.68692 10.378 3 1 Median 310500000 164980000 145520000 0 0 0 8061600 4063100 3998500 160150000 89887000 70262000 134410000 66415000 67999000 3991500 2445300 1546100 3882500 2169700 1712700 28811 2565;3093 30294;30295 151009;151010;151011;151012;151013;151014;151015;151016;151017;151018;151019;151020;151021;151022;151023;151024;151025 151829;151830;151831;151832;151833;151834;151835;151836;151837;151838;151839;151840;151841;151842;151843;151844;151845;151846;151847;151848;151849;151850;151851 151837 1241 23 RPAEDMEEEQAFKR EETFPNTETNGEFGKRPAEDMEEEQAFKRS KRPAEDMEEEQAFKRSRNTDEMVELRILLQ K R P K R S 2 2 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 14 2 1734.7995 P61978;S4R457;Q5T6W2 P61978 22 35 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3;4 1.0471E-16 181.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 14 18 14 14 0.94417 0.97305 16.327 69 Median 0.8773 0.88565 27.694 4 2 Median 1.0702 1.2287 24.936 6 1 Median 0.83297 0.96944 11.634 14 1 Median 1.0397 1.0448 16.715 18 1 Median 0.78649 0.90633 12.067 13 1 Median 1.0406 0.95852 16.498 14 0 Median 1974800000 1010400000 964390000 111510000 54116000 57394000 90624000 41521000 49103000 990670000 525300000 465380000 412190000 193340000 218850000 287000000 157970000 129030000 82809000 38175000 44634000 28812 2565;3093 30296;30297 151026;151027;151028;151029;151030;151031;151032;151033;151034;151035;151036;151037;151038;151039;151040;151041;151042;151043;151044;151045;151046;151047;151048;151049;151050;151051;151052;151053;151054;151055;151056;151057;151058;151059;151060;151061;151062;151063;151064;151065;151066;151067;151068;151069;151070;151071;151072;151073;151074;151075;151076;151077;151078;151079;151080;151081;151082;151083;151084;151085;151086;151087;151088;151089;151090;151091;151092;151093;151094;151095 151852;151853;151854;151855;151856;151857;151858;151859;151860;151861;151862;151863;151864;151865;151866;151867;151868;151869;151870;151871;151872;151873;151874;151875;151876;151877;151878;151879;151880;151881;151882;151883;151884;151885;151886;151887;151888;151889;151890;151891;151892;151893;151894;151895;151896;151897;151898;151899;151900;151901;151902;151903;151904;151905;151906;151907;151908;151909;151910;151911;151912;151913;151914;151915;151916;151917;151918;151919;151920;151921;151922;151923;151924;151925;151926;151927;151928;151929;151930;151931;151932;151933;151934;151935;151936;151937;151938;151939;151940;151941;151942;151943;151944;151945;151946;151947;151948;151949;151950;151951 151914 1241 99 RPAEDTDRETVAGIPNK DVRSTNGTAECKTVKRPAEDTDRETVAGIP AEDTDRETVAGIPNKVGVRIVTISDPNNAG K R P N K V 2 2 1 2 0 0 2 1 0 1 0 1 0 0 2 0 2 0 0 1 0 0 17 2 1867.9388 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1517 1533 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 8.9071E-05 46.319 By MS/MS By MS/MS 2 1 0.66952 0.75477 18.212 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58539 0.68135 14.473 2 0 Median 0.88299 0.88448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23496000 14405000 9091000 0 0 0 0 0 0 20614000 12826000 7787400 2882800 1579200 1303600 0 0 0 0 0 0 28813 3122 30298 151096;151097;151098 151952;151953;151954;151955;151956;151957;151958 151952 7 RPAGGPQNQFPFQFGR YGNAYPATATAATERRPAGGPQNQFPFQFG PAGGPQNQFPFQFGRDRVSAPPGTNAQQNM R R P G R D 1 2 1 0 0 3 0 3 0 0 0 0 0 3 3 0 0 0 0 0 0 0 16 1 1802.8965 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1446 1461 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3 2.1982E-07 93.228 By MS/MS By MS/MS By MS/MS 3 2 1 0.63483 0.71985 11.338 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57899 0.7314 8.5388 3 1 Median 0.82657 0.75932 20.609 2 0 Median 0.65493 0.70848 NaN 1 0 Median NaN NaN NaN 0 0 Median 70856000 43933000 26923000 0 0 0 0 0 0 65814000 41051000 24763000 1299600 730820 568810 3742700 2151300 1591400 0 0 0 28814 1480 30299 151099;151100;151101;151102;151103;151104 151959;151960;151961;151962;151963;151964;151965;151966;151967 151961 9 RPAGPELQTPPGK NSAERRKPHSWWGARRPAGPELQTPPGKDG ARRPAGPELQTPPGKDGAVEDEEGEGEDGE R R P G K D 1 1 0 0 0 1 1 2 0 0 1 1 0 0 4 0 1 0 0 0 0 0 13 1 1346.7306 Q9Y2U8 Q9Y2U8 201 213 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 0.027533 19.604 By MS/MS 1 0.49623 0.56569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49623 0.56569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1238800 749050 489700 0 0 0 0 0 0 1238800 749050 489700 0 0 0 0 0 0 0 0 0 28815 4392 30300 151105 151968;151969 151968 2 RPAILTYHDVGLNYK YGSVTFTVYGTPKPKRPAILTYHDVGLNYK RPAILTYHDVGLNYKSCFQPLFQFE_____ K R P Y K S 1 1 1 1 0 0 0 1 1 1 2 1 0 0 1 0 1 0 2 1 0 0 15 1 1758.9417 G3V5B5;G3V239;H7C0X0;G3V285;G3V3L1;G3V4S2;G3V271;G3V358;G3V5B7;G3V383;A0A0A0MS87;G3V5S0;G3V392;G3V5G0;G3V2I9;G3V5H8;G3V4S9;G3V3X2;G3V3D5;G3V5V9;G3V5G7;G3V552;G3V5P9;G3V5D7;G3V2S0;G3V3C3;G3V2Y3;G3V3X3;G3V280;G3V3P1;G3V3P6;H0YJ56;G3V4T9;G3V2T2;G3V5A6;Q9UN36 G3V5B5 62 76 NDRG2 Protein NDRG2 yes no 3 2.1077E-05 81.311 By MS/MS By matching By matching 1 1 1 0.85728 0.91864 26.958 3 Median 0.85728 0.91864 NaN 1 0 Median 1.1745 1.0962 NaN 1 0 Median 0.56874 0.64556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17996000 9629300 8366800 14331000 7774700 6556200 491910 245680 246220 3173300 1608900 1564400 0 0 0 0 0 0 0 0 0 28816 177 30301 151106;151107;151108 151970 151970 1 RPALPEIK KKEVAFFNNFLTDAKRPALPEIKPAQPPGP NFLTDAKRPALPEIKPAQPPGPAQILPPGL K R P I K P 1 1 0 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 1 922.56 Q9BXP5;H7C3A1;A0A0A0MSP6 Q9BXP5 759 766 SRRT Serrate RNA effector molecule homolog yes no 2 0.023461 49.358 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.81017 0.77859 18.87 5 Median 0.9865 1.0198 NaN 1 0 Median 0.88588 0.83421 NaN 1 0 Median 0.66964 0.76106 NaN 1 0 Median 0.81017 0.77859 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68866 0.6033 NaN 1 0 Median 10327000 5493400 4833800 813890 358770 455120 3524300 1817500 1706800 2720300 1577300 1143000 2396200 1261500 1134600 0 0 0 872590 478410 394190 28817 3879 30302 151109;151110;151111;151112;151113 151971 151971 1 RPAMLDNEADGNK QIRLWPMQARSNGTKRPAMLDNEADGNKTM TKRPAMLDNEADGNKTMIELSDNENPWTIF K R P N K T 2 1 2 2 0 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 0 0 13 1 1429.662 Q93009;H3BND8 Q93009 634 646 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2;3 4.625E-07 147.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.81547 0.7815 9.4275 7 Median 0.83234 0.86114 NaN 1 0 Median 0.91207 0.84944 15.365 2 0 Median 0.66401 0.7585 2.8799 2 0 Median 0.87473 0.84063 10.315 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24038000 12283000 11755000 1367900 741720 626170 18190000 9038400 9151300 2595700 1541100 1054600 1885000 962220 922760 0 0 0 0 0 0 28818 3574 30303 151114;151115;151116;151117;151118;151119;151120 151972;151973;151974;151975;151976;151977;151978;151979;151980;151981 151978 10 RPANQFVPR FPHMLFMVHPEYRPKRPANQFVPRLYGFKI PEYRPKRPANQFVPRLYGFKIHPMAYQLQL K R P P R L 1 2 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 9 1 1083.5938 Q5SRQ6;P67870 Q5SRQ6 197 205 CSNK2B Casein kinase II subunit beta yes no 2 0.0038779 69.998 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 0.84777 0.81886 8.7486 6 Median 0.83875 0.89656 NaN 1 0 Median 0.85689 0.72773 NaN 1 0 Median 0.75593 0.78378 NaN 1 0 Median 0.89189 0.79861 NaN 1 0 Median 0.77418 0.83961 NaN 1 0 Median 1.0315 0.91889 NaN 1 0 Median 49400000 26078000 23322000 11822000 6006500 5815700 4337100 2287900 2049200 23791000 13628000 10163000 2752700 1336700 1415900 4908500 1874900 3033600 1788200 943620 844550 28819 2628 30304 151121;151122;151123;151124;151125;151126 151982;151983;151984;151985 151983 4 RPAPQQIQQVQQQAVQNR VRPGLAQSGMDQSRKRPAPQQIQQVQQQAV PQQIQQVQQQAVQNRNHNAKKKKMADKILP K R P N R N 2 2 1 0 0 8 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 18 1 2116.125 Q96GM5;F8VZ70;F8VUB0;F8VW95 Q96GM5 102 119 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 3 1.0702E-05 58.83 By MS/MS 1 0.9463 1.0221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9463 1.0221 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2481300 1226000 1255300 0 0 0 0 0 0 2481300 1226000 1255300 0 0 0 0 0 0 0 0 0 28820 3659 30305 151127 151986 151986 1 RPASVSSSAAVEHEQR ASLGSAQPTDLGAHKRPASVSSSAAVEHEQ PASVSSSAAVEHEQREAAAKEKQPPPPAHR K R P Q R E 3 2 0 0 0 1 2 0 1 0 0 0 0 0 1 4 0 0 0 2 0 0 16 1 1709.8445 Q7Z5L9 Q7Z5L9 237 252 IRF2BP2 Interferon regulatory factor 2-binding protein 2 yes yes 3 6.1783E-05 58.98 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.87069 0.79077 11.728 5 Median 0.65567 0.64599 NaN 1 0 Median 0.89146 0.82099 5.304 2 1 Median 0.65434 0.73019 NaN 1 0 Median 0.91477 0.85235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3599500 1915900 1683600 829470 444400 385080 1549400 800370 749050 1072100 602950 469160 148460 68150 80310 0 0 0 0 0 0 28821 3250 30306 151128;151129;151130;151131;151132 151987;151988;151989 151989 3 RPAVASARPSILPSK PMSLASGLVPAAPPKRPAVASARPSILPSK RPAVASARPSILPSKDVKPKPIADAKAPEK K R P S K D 3 2 0 0 0 0 0 0 0 1 1 1 0 0 3 3 0 0 0 1 0 0 15 2 1548.91 E7EVA0;P27816;H7C4C5;B5MEG9 E7EVA0 1900 1914 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 3 0.00011025 54.09 By MS/MS By matching 1 1 1.094 1.1748 6.6188 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.092 1.2311 NaN 1 0 Median 1.0959 1.1211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4814800 2215500 2599300 0 0 0 0 0 0 4241500 1997100 2244400 573280 218360 354920 0 0 0 0 0 0 28822 895 30307 151133;151134 151990;151991 151991 2 RPAVVYIGSAGKPHER TMPPAVERLARSYLRRPAVVYIGSAGKPHE PAVVYIGSAGKPHERVEQKVFLMSESEKRK R R P E R V 2 2 0 0 0 0 1 2 1 1 0 1 0 0 2 1 0 0 1 2 0 0 16 2 1735.9482 Q9BUQ8 Q9BUQ8 623 638 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3;4 2.9078E-05 72.315 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 4 1 2 0.85513 0.91673 23.107 15 Median 0.7323 0.78873 NaN 1 0 Median 0.86583 1.0541 7.7831 4 0 Median 0.69774 0.82097 12.975 3 1 Median 0.95131 0.96113 6.0722 4 0 Median 0.50094 0.58601 NaN 1 1 Median 0.68864 0.59718 28.277 2 1 Median 79452000 44195000 35258000 3095100 1691600 1403500 14907000 8140300 6766400 32438000 18935000 13503000 22438000 11474000 10964000 3669300 2385200 1284200 2904700 1568800 1335900 28823 3842 30308 151135;151136;151137;151138;151139;151140;151141;151142;151143;151144;151145;151146;151147;151148;151149 151992;151993;151994;151995;151996;151997;151998;151999;152000;152001;152002;152003;152004;152005;152006;152007;152008;152009;152010;152011;152012;152013;152014;152015;152016 152008 25 RPAVWLNAGIHSR RPMYVLKFSTGKGVRRPAVWLNAGIHSREW VRRPAVWLNAGIHSREWISQATAIWTARKI R R P S R E 2 2 1 0 0 0 0 1 1 1 1 0 0 0 1 1 0 1 0 1 0 0 13 1 1475.811 Q9UI42;B7Z5J4;C9J6N7 Q9UI42 171 183 CPA4 Carboxypeptidase A4 yes no 3 0.010334 40.477 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1157200 1157200 0 0 0 0 0 0 0 0 0 0 1157200 1157200 0 0 0 0 0 0 0 28824 633 30309 151150 152017 152017 1 RPCFSALTPDETYVPK SEKVTKCCTESLVNRRPCFSALTPDETYVP PCFSALTPDETYVPKAFDEKLFTFHADICT R R P P K A 1 1 0 1 1 0 1 0 0 0 1 1 0 1 3 1 2 0 1 1 0 0 16 1 1879.9138 CON__P02769 CON__P02769 508 523 yes yes 2;3 2.0963E-06 78.653 By MS/MS By MS/MS 2 1 0.18592 0.17732 89.259 2 Median 0.094252 0.094332 NaN 1 1 Median 0.36676 0.33333 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62471000 47242000 15229000 41709000 35985000 5724400 20762000 11258000 9504400 0 0 0 0 0 0 0 0 0 0 0 0 + 28825 746 30310 151151;151152;151153 152018;152019;152020;152021 152020 4 RPDDTAFQIVELR YDQDGESLQMFQALKRPDDTAFQIVELRIF LKRPDDTAFQIVELRIFSNWGHPEYTCLYR K R P L R I 1 2 0 2 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 13 1 1558.8104 H0Y6N5;H0Y742;E9PHI4;O94901 H0Y6N5 598 610 SUN1 SUN domain-containing protein 1 yes no 3 0.002453 52.265 By MS/MS 1 0.88809 0.96493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88809 0.96493 NaN 1 1 Median NaN NaN NaN 0 0 Median 3208800 1827700 1381100 0 0 0 0 0 0 0 0 0 0 0 0 3208800 1827700 1381100 0 0 0 28826 932 30311 151154 152022 152022 1 RPDDVPLSLSPSKR AGAAHKPRARLAALKRPDDVPLSLSPSKRA KRPDDVPLSLSPSKRACASPSAQVEGSPVA K R P K R A 0 2 0 2 0 0 0 0 0 0 2 1 0 0 3 3 0 0 0 1 0 0 14 2 1565.8526 Q9UFC0;F8WDB4 Q9UFC0 234 247 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 3 7.2628E-08 113.59 By MS/MS By matching 2 1 0.59621 0.63996 10.934 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54931 0.64227 15.46 2 0 Median 0.63888 0.63996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17643000 11334000 6308600 0 0 0 0 0 0 16901000 10919000 5982200 741190 414730 326460 0 0 0 0 0 0 28827 4258 30312 151155;151156;151157 152023;152024 152024 2 RPDFAQQQAMQQLTFDGK MPRFQHQAPRQLFYKRPDFAQQQAMQQLTF FAQQQAMQQLTFDGKRMRKAVNRKTIDYNP K R P G K R 2 1 0 2 0 5 0 1 0 0 1 1 1 2 1 0 1 0 0 0 0 0 18 1 2108.0109 Q9C0J8;B9A053 Q9C0J8 29 46 WDR33 pre-mRNA 3 end processing protein WDR33 yes no 3 1.514E-11 100.27 By MS/MS 1 0.79638 0.90272 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79638 0.90272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12563000 6514900 6048100 0 0 0 0 0 0 12563000 6514900 6048100 0 0 0 0 0 0 0 0 0 28828 3907 30313 151158 152025 152025 1 RPDFAQQQAMQQLTFDGKR MPRFQHQAPRQLFYKRPDFAQQQAMQQLTF AQQQAMQQLTFDGKRMRKAVNRKTIDYNPS K R P K R M 2 2 0 2 0 5 0 1 0 0 1 1 1 2 1 0 1 0 0 0 0 0 19 2 2264.112 Q9C0J8;B9A053 Q9C0J8 29 47 WDR33 pre-mRNA 3 end processing protein WDR33 yes no 3;4 7.4904E-19 127.17 By MS/MS By matching By matching 4 1 1 0.78394 0.8365 21.639 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78394 0.88376 9.3774 4 0 Median 0.7958 0.79714 NaN 1 0 Median 0.48624 0.53365 NaN 1 0 Median NaN NaN NaN 0 0 Median 98093000 52746000 45347000 0 0 0 0 0 0 94590000 50888000 43701000 1630900 880420 750450 1872500 977160 895340 0 0 0 28829 3907 30314;30315 151159;151160;151161;151162;151163;151164 152026;152027;152028;152029;152030;152031 152029 1847 6 RPDLYALAMGYSGQLK LERRVHKICQEEKEKRPDLYALAMGYSGQL PDLYALAMGYSGQLKSRKSYMIPENEFHHK K R P L K S 2 1 0 1 0 1 0 2 0 0 3 1 1 0 1 1 0 0 2 0 0 0 16 1 1781.9134 Q8NI27;A0A0C4DG98 Q8NI27 1159 1174 THOC2 THO complex subunit 2 yes no 3 0.0020112 44.567 By MS/MS By matching 3 1 0.81266 0.90193 19.194 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76511 0.91171 20.222 3 1 Median 0.86317 0.83329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6161600 3189200 2972400 0 0 0 0 0 0 6089900 3156400 2933500 71702 32850 38852 0 0 0 0 0 0 28830 3448 30316;30317 151165;151166;151167;151168 152032;152033;152034 152034 1729 3 RPDLYGNLGHPLS YLRQLRRHLPVFQHRRPDLYGNLGHPLS__ HRRPDLYGNLGHPLS_______________ R R P L S - 0 1 1 1 0 0 0 2 1 0 3 0 0 0 2 1 0 0 1 0 0 0 13 1 1437.7365 Q86X76 Q86X76 315 327 NIT1 Nitrilase homolog 1 yes yes 2 1.3465E-06 99.973 By MS/MS 1 0.76271 0.71265 NaN 1 Median 0.76271 0.71265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9041900 5131200 3910700 9041900 5131200 3910700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28831 3300 30318 151169 152035;152036 152035 2 RPDQQLQGEGK PPVALKKEGIRRVGRRPDQQLQGEGKIIDR RVGRRPDQQLQGEGKIIDRRPERRPPRERR R R P G K I 0 1 0 1 0 3 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 11 1 1254.6317 Q8NC51 Q8NC51 112 122 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.00099798 64.297 By MS/MS By MS/MS By matching By matching 2 2 3 1 0.94689 0.88807 12.256 8 Median 0.94689 0.96377 2.5221 2 0 Median 0.97162 0.88807 0.13904 2 0 Median 0.86823 0.87998 15.229 3 0 Median 0.77977 0.73172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6725100 3403700 3321400 1695800 856520 839270 3384600 1649300 1735300 1418700 744100 674580 226070 153760 72315 0 0 0 0 0 0 28832 3414 30319 151170;151171;151172;151173;151174;151175;151176;151177 152037;152038;152039;152040;152041;152042;152043 152042 7 RPDSSDDRYVMTK RPGMPPQPQGPAPLRRPDSSDDRYVMTKHA LRRPDSSDDRYVMTKHATIYPTEEELQAVQ R R P T K H 0 2 0 3 0 0 0 0 0 0 0 1 1 0 1 2 1 0 1 1 0 0 13 2 1568.7253 Q96KR1;H0Y8W1 Q96KR1 718 730 ZFR Zinc finger RNA-binding protein yes no 3 0.070391 12.627 By MS/MS 1 0.84138 0.94852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84138 0.94852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3034100 1571700 1462500 0 0 0 0 0 0 3034100 1571700 1462500 0 0 0 0 0 0 0 0 0 28833 3697 30320 151178 152044 152044 1 RPDSTWHSAEVIQSR EPEVTVEIGETYLCRRPDSTWHSAEVIQSR RPDSTWHSAEVIQSRVNDQEGREEFYVHYV R R P S R V 1 2 0 1 0 1 1 0 1 1 0 0 0 0 1 3 1 1 0 1 0 0 15 1 1767.8652 Q9H7Z6 Q9H7Z6 65 79 KAT8 Histone acetyltransferase KAT8 yes yes 3 4.8972E-05 74.12 By MS/MS By MS/MS 1 1 0.9085 0.90565 1.3669 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83045 0.89694 NaN 1 0 Median 0.99389 0.91445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12075000 6111900 5963100 0 0 0 0 0 0 4832000 2374200 2457800 7243100 3737800 3505300 0 0 0 0 0 0 28834 3984 30321 151179;151180 152045;152046;152047 152047 3 RPDVSVQGDEVTLYTPEER DAASIAAIVALCHFRRPDVSVQGDEVTLYT SVQGDEVTLYTPEERDPVPLSIHHMPICVS R R P E R D 0 2 0 2 0 1 3 1 0 0 1 0 0 0 2 1 2 0 1 3 0 0 19 1 2189.06 D6RIY6;Q06265;D6RA17 D6RIY6 146 164 EXOSC9 Exosome complex component RRP45 yes no 3 8.9841E-07 51.819 By MS/MS 2 0.93721 0.86776 3.2148 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93721 0.86776 3.2148 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3285100 1530800 1754300 0 0 0 0 0 0 0 0 0 3285100 1530800 1754300 0 0 0 0 0 0 28835 828 30322 151181;151182 152048;152049;152050;152051 152048 4 RPDVVENQPDAASQLNVDASGNLAK HDFQPHVIVHCAAERRPDVVENQPDAASQL AASQLNVDASGNLAKEAAAVGAFLIYISSD R R P A K E 4 1 3 3 0 2 1 1 0 0 2 1 0 0 2 2 0 0 0 3 0 0 25 1 2607.2889 Q9NZL9;H7C0X7 Q9NZL9 98 122 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 3 4.0853E-19 75.71 By MS/MS By matching 1 1 0.70908 0.70965 19.553 2 Median 0.5768 0.61801 NaN 1 0 Median 0.87169 0.81487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10504000 6211900 4292000 8793400 5357300 3436100 1710500 854540 855950 0 0 0 0 0 0 0 0 0 0 0 0 28836 4191 30323 151183;151184 152052;152053 152052 2 RPEDYEAVFVGNIDDHFR GEYGSDPEERPPNLKRPEDYEAVFVGNIDD DYEAVFVGNIDDHFRIGVAILQRSIRLYAP K R P F R I 1 2 1 3 0 0 2 1 1 1 0 0 0 2 1 0 0 0 1 2 0 0 18 1 2178.013 Q68CQ4;H7C2R4 Q68CQ4 409 426 DIEXF Digestive organ expansion factor homolog yes no 3 0.060297 15.592 By MS/MS 1 0.77881 0.8999 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77881 0.8999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1879400 1255700 623720 0 0 0 0 0 0 1879400 1255700 623720 0 0 0 0 0 0 0 0 0 28837 3123 30324 151185 152054 152054 0 RPEEVALGLHHR TRTLCSPGPSQPGEKRPEEVALGLHHRLPA GEKRPEEVALGLHHRLPALGRALGHSIQQR K R P H R L 1 2 0 0 0 0 2 1 2 0 2 0 0 0 1 0 0 0 0 1 0 0 12 1 1412.7637 Q96ER9;C9JPZ8;C9JSW8 Q96ER9 48 59 CCDC51 Coiled-coil domain-containing protein 51 yes no 3 0.00024826 57.802 By matching By MS/MS 1 1 1.3253 1.3137 3.4366 2 Median 1.2186 1.2822 NaN 1 0 Median 1.4413 1.346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2112500 823760 1288700 1182400 484550 697890 930030 339210 590820 0 0 0 0 0 0 0 0 0 0 0 0 28838 3640 30325 151186;151187 152055 152055 1 RPEIGTFLR SSPSPTSPSPTLGRRRPEIGTFLRKKKTSD PTLGRRRPEIGTFLRKKKTSDIYFVSLVWA R R P L R K 0 2 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 9 1 1087.6138 Q9H330;F8WBJ7 Q9H330 339 347 TMEM245 Transmembrane protein 245 yes no 2 0.0023488 79.148 By MS/MS 1 1.1414 1.0698 NaN 1 Median NaN NaN NaN 0 0 Median 1.1414 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7905700 3489700 4416000 0 0 0 7905700 3489700 4416000 0 0 0 0 0 0 0 0 0 0 0 0 28839 3951 30326 151188 152056;152057 152056 2 RPEILKQEIK VQYVALRNINLIVQKRPEILKQEIKVFFVK LIVQKRPEILKQEIKVFFVKYNDPIYVKLE K R P I K V 0 1 0 0 0 1 2 0 0 2 1 2 0 0 1 0 0 0 0 0 0 0 10 2 1252.7503 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 275 284 AP2B1 AP-2 complex subunit beta yes no 3 0.056053 17.367 By matching By matching By MS/MS 1 1 1 1.0109 1.2164 8.371 3 Plateau 1.0701 1.2164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99637 1.1741 NaN 1 0 Median 1.0109 1.0372 NaN 1 0 Median 3309900 1517400 1792500 1730900 714890 1016000 0 0 0 0 0 0 0 0 0 1105300 529430 575860 473730 273100 200630 28840 128 30327 151189;151190;151191 152058 152058 1 RPEILVQPLK HSLVKHFQERRLALRRPEILVQPLKVSNRK RLALRRPEILVQPLKVSNRKSSGFRKSFRL R R P L K V 0 1 0 0 0 1 1 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 10 1 1191.7339 U5GXS2;S4R337;Q5T2T1 U5GXS2 63 72 MPP7 MAGUK p55 subfamily member 7 yes no 2 0.0053653 55.549 By matching By MS/MS By MS/MS 1 1 1 0.72713 0.76175 20.106 3 Median 0.53717 0.54146 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72713 0.77202 NaN 1 0 Median 0.83079 0.76175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12627000 7779700 4847500 3528200 2358700 1169500 0 0 0 7446900 4459100 2987800 1652100 961940 690180 0 0 0 0 0 0 28841 3084 30328 151192;151193;151194 152059;152060 152059 2 RPEIPTEQSR SGAILSLPKALLDPRRPEIPTEQSREENLI LLDPRRPEIPTEQSREENLIPYSPDVQIHA R R P S R E 0 2 0 0 0 1 2 0 0 1 0 0 0 0 2 1 1 0 0 0 0 0 10 1 1211.6258 Q8N766;H7C4E3 Q8N766 882 891 EMC1 ER membrane protein complex subunit 1 yes no 2 0.00094654 111.65 By MS/MS 1 0.94746 0.91343 NaN 1 Median NaN NaN NaN 0 0 Median 0.94746 0.91343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4078100 1874800 2203300 0 0 0 4078100 1874800 2203300 0 0 0 0 0 0 0 0 0 0 0 0 28842 3392 30329 151195 152061;152062 152061 2 RPEIPTEQSREENLIPYSPDVQIHAER SGAILSLPKALLDPRRPEIPTEQSREENLI NLIPYSPDVQIHAERFINYNQTVSRMRGIY R R P E R F 1 3 1 1 0 2 5 0 1 3 1 0 0 0 4 2 1 0 1 1 0 0 27 2 3202.6007 Q8N766 Q8N766 882 908 EMC1 ER membrane protein complex subunit 1 yes yes 4 7.8502E-06 44.05 By MS/MS 1 0.62246 0.68846 NaN 1 Median 0.62246 0.68846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4577000 3053300 1523600 4577000 3053300 1523600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28843 3392 30330 151196 152063 152063 1 RPEIVVATPGR VGGMSTQKQQRMLNRRPEIVVATPGRLWEL MLNRRPEIVVATPGRLWELIKEKHYHLRNL R R P G R L 1 2 0 0 0 0 1 1 0 1 0 0 0 0 2 0 1 0 0 2 0 0 11 1 1193.6881 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 394 404 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00027159 76.143 By MS/MS By MS/MS By matching 1 1 1 1.0954 0.9326 21.048 3 Plateau NaN NaN NaN 0 0 Median 0.83472 0.80474 NaN 1 0 Median 0.80711 0.9326 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1218 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median 9809400 4889000 4920400 0 0 0 3187300 1626400 1560800 2879900 1585200 1294600 0 0 0 3742300 1677300 2065000 0 0 0 28844 1118 30331 151197;151198;151199 152064;152065;152066;152067 152065 4 RPEKPVPPPPPIAK KASNLLRSSGTVYPKRPEKPVPPPPPIAKI KRPEKPVPPPPPIAKINGEVSSISSKFETE K R P A K I 1 1 0 0 0 0 1 0 0 1 0 2 0 0 7 0 0 0 0 1 0 0 14 2 1521.9031 Q9Y5K6 Q9Y5K6 412 425 CD2AP CD2-associated protein yes yes 3 0.00027912 58.116 By MS/MS By MS/MS By MS/MS 1 1 3 0.3284 0.33807 11.295 5 Median 0.3284 0.36171 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.33475 0.38176 NaN 1 0 Median 0.31629 0.33807 9.4122 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11186000 7968600 3217400 1367400 1022500 344830 0 0 0 5031500 3658900 1372600 4787100 3287100 1499900 0 0 0 0 0 0 28845 4460 30332 151200;151201;151202;151203;151204 152068;152069;152070;152071;152072;152073 152072 6 RPELEDSTLR PATQVAQVTLQSVQRRPELEDSTLRYLQDL QSVQRRPELEDSTLRYLQDLLAWVEENQHR R R P L R Y 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 10 1 1214.6255 Q15149;H0YDN1;E9PMV1 Q15149 651 660 PLEC Plectin yes no 2;3 2.7052E-07 132.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 3 4 1.0177 0.99667 24.763 17 Median 1.002 1.0888 8.9114 2 0 Median 1.0634 0.99667 13.218 3 1 Median 1.0291 1.1309 46.052 3 0 Median 1.2916 1.2036 12.126 2 0 Median 0.86431 0.93499 19.726 3 1 Median 1.0314 0.89415 1.0901 4 2 Linear 84912000 39724000 45188000 10332000 5310200 5022200 37842000 17148000 20694000 13077000 6191100 6885400 3857300 1840100 2017200 10530000 4757500 5772900 9273000 4476800 4796200 28846 2933 30333 151205;151206;151207;151208;151209;151210;151211;151212;151213;151214;151215;151216;151217;151218;151219;151220;151221 152074;152075;152076;152077;152078;152079;152080;152081;152082;152083;152084;152085;152086;152087;152088;152089;152090;152091;152092;152093;152094;152095 152081 21 RPELGVTLTK DVLDSGDSAHLTLMKRPELGVTLTKLHCWS LTLMKRPELGVTLTKLHCWSLTQYSKCVFM K R P T K L 0 1 0 0 0 0 1 1 0 0 2 1 0 0 1 0 2 0 0 1 0 0 10 1 1112.6554 P46976;C9JQ42;G5E9W8;C9J8R8;C9J7C7 P46976 77 86 GYG1 Glycogenin-1 yes no 2 0.0012639 70.412 By MS/MS By MS/MS 3 3 0.96898 0.90703 36.79 6 Median 1.1211 1.147 53.393 3 0 Plateau 1.0046 0.92246 3.2028 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55213000 27055000 28158000 12783000 6810300 5973100 42430000 20244000 22185000 0 0 0 0 0 0 0 0 0 0 0 0 28847 2351 30334 151222;151223;151224;151225;151226;151227 152096;152097;152098;152099 152098 4 RPELLTHSTTEVTQPR EKIIQVGNRIKFVIKRPELLTHSTTEVTQP PELLTHSTTEVTQPRTNTPVKEDWNVRITK K R P P R T 0 2 0 0 0 1 2 0 1 0 2 0 0 0 2 1 4 0 0 1 0 0 16 1 1863.9803 P78347;A0A494C1K3;A0A494C0Q7 P78347 540 555 GTF2I General transcription factor II-I yes no 2;3;4 7.901E-11 118.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 10 10 2 4 0.69736 0.66248 64.777 31 Median 0.68871 0.73506 20.175 2 0 Median 0.67544 0.61344 35.584 3 0 Median 0.52753 0.61456 36.793 10 1 Median 0.79852 0.72158 106.65 10 2 Median 0.5637 0.61113 26.12 2 0 Median 0.73663 0.64956 12.06 4 0 Median 329090000 206360000 122740000 16604000 9500900 7102700 6782300 4135900 2646300 219370000 141630000 77748000 54871000 32828000 22042000 14852000 8880100 5972000 16612000 9387300 7225000 28848 2642 30335 151228;151229;151230;151231;151232;151233;151234;151235;151236;151237;151238;151239;151240;151241;151242;151243;151244;151245;151246;151247;151248;151249;151250;151251;151252;151253;151254;151255;151256;151257;151258 152100;152101;152102;152103;152104;152105;152106;152107;152108;152109;152110;152111;152112;152113;152114;152115;152116;152117;152118;152119;152120;152121;152122;152123;152124;152125;152126;152127;152128;152129;152130;152131;152132;152133;152134;152135;152136;152137;152138;152139 152107 39 RPENSLLEETLHFDHAVR EKKPWQLQGEVTAQKRPENSLLEETLHFDH NSLLEETLHFDHAVRMAPVITEETTLQLED K R P V R M 1 2 1 1 0 0 3 0 2 0 3 0 0 1 1 1 1 0 0 1 0 0 18 1 2162.0869 O00566;U3KQ48 O00566 395 412 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes no 4 2.7469E-06 52.612 By MS/MS 2 1.0939 1.1813 18.598 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0939 1.1813 18.598 2 1 Median NaN NaN NaN 0 0 Median 21496000 10902000 10594000 0 0 0 0 0 0 0 0 0 0 0 0 21496000 10902000 10594000 0 0 0 28849 1471 30336 151259;151260 152140;152141;152142 152141 3 RPEPIIPVTQPR SSMSPLEEEAPQAKRRPEPIIPVTQPRLAG AKRRPEPIIPVTQPRLAGAGGRKKIFRLSD R R P P R L 0 2 0 0 0 1 1 0 0 2 0 0 0 0 4 0 1 0 0 1 0 0 12 1 1401.8092 Q92797;A0A087WUE9;M0R3C7 Q92797 522 533 SYMPK Symplekin yes no 3 0.00014576 68.676 By MS/MS By MS/MS 1 1 0.53386 0.58253 17.165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42423 0.51595 NaN 1 0 Median 0.67182 0.65771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4566500 3036900 1529600 0 0 0 0 0 0 3289400 2237300 1052200 1277100 799650 477460 0 0 0 0 0 0 28850 3558 30337 151261;151262 152143;152144 152143 2 RPEPVQTLDEAR GSIDSSIRCWDCRSRRPEPVQTLDEARDGV RSRRPEPVQTLDEARDGVSSVKVSDHEILA R R P A R D 1 2 0 1 0 1 2 0 0 0 1 0 0 0 2 0 1 0 0 1 0 0 12 1 1409.7263 Q9BRX9;H0YIE8 Q9BRX9 142 153 WDR83 WD repeat domain-containing protein 83 yes no 3 0.00031253 54.524 By MS/MS 1 0.74541 0.6956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74541 0.6956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2776700 1245000 1531600 0 0 0 0 0 0 0 0 0 2776700 1245000 1531600 0 0 0 0 0 0 28851 3808 30338 151263 152145;152146 152146 2 RPEQAVEAVLGK AYALEVPAAAVGGEKRPEQAVEAVLGKEVQ GEKRPEQAVEAVLGKEVQLMHRAPVVAIAV K R P G K E 2 1 0 0 0 1 2 1 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 1 1295.7197 A0A087WW77;Q15334 A0A087WW77 764 775 LLGL1 Lethal(2) giant larvae protein homolog 1 yes no 2 0.0012024 82.417 By MS/MS 1 0.80369 0.82895 NaN 1 Median 0.80369 0.82895 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5993700 3334600 2659100 5993700 3334600 2659100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28852 55 30339 151264 152147 152147 1 RPETVATQFK IMSQCFDRSELSDKKRPETVATQFKMSLLQ LSDKKRPETVATQFKMSLLQLVEILQSKEP K R P F K M 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 2 0 0 1 0 0 10 1 1175.6299 F5H6E2;O00159 F5H6E2 572 581 MYO1C Unconventional myosin-Ic yes no 2 0.0098867 48.423 By MS/MS 1 0.81405 0.76964 NaN 1 Median NaN NaN NaN 0 0 Median 0.81405 0.76964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2536600 1523300 1013300 0 0 0 2536600 1523300 1013300 0 0 0 0 0 0 0 0 0 0 0 0 28853 1042 30340 151265 152148;152149 152149 2 RPFAVTTQSFGSNAEGQHSGFGPQPNPEK KPAPGTGGLKFNIQKRPFAVTTQSFGSNAE EGQHSGFGPQPNPEKVQNHSGSSARGNLSG K R P E K V 2 1 2 0 0 3 2 4 1 0 0 1 0 3 4 3 2 0 0 1 0 0 29 1 3071.4486 C9JMY0;A0A087WUE4;Q96PV6;E7EWC7;A0A0G2JNN3 C9JMY0 204 232 LENG8 Leukocyte receptor cluster member 8 yes no 4 4.8597E-21 69.782 By MS/MS 1 0.40155 0.45491 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40155 0.45491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15066000 9991600 5074700 0 0 0 0 0 0 15066000 9991600 5074700 0 0 0 0 0 0 0 0 0 28854 30 30341 151266 152150 152150 1 RPFDPNDR TGMPRRSRFDRPPARRPFDPNDRCYECGEK FDRPPARRPFDPNDRCYECGEKGHYAYDCH R R P D R C 0 2 1 2 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 8 1 1015.4835 A0A0B4J1Z1;C9JAB2;Q16629;F8WEA1 A0A0B4J1Z1 98 105 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 0.016745 56.258 By matching By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 3 3 0.81018 0.77878 6.616 10 Median 0.8093 0.87126 NaN 1 0 Median 0.88576 0.81529 NaN 1 0 Median 0.6659 0.69503 NaN 1 0 Median 0.81107 0.75688 NaN 1 0 Median 0.71549 0.77595 2.206 3 0 Median 0.93597 0.8232 5.7843 3 0 Median 21878000 12105000 9772700 668400 363510 304890 802630 448750 353880 2198500 1325700 872760 1735700 981060 754590 14996000 8254100 6741700 1476600 731650 744900 28855 214 30342 151267;151268;151269;151270;151271;151272;151273;151274;151275;151276 152151;152152;152153;152154 152152 4 RPFLEPK KWILENKAGISFIIKRPFLEPKKHVGGRVM AGISFIIKRPFLEPKKHVGGRVMVTDADRS K R P P K K 0 1 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 7 1 885.50724 P78347;A0A494C1K3 P78347 186 192 GTF2I General transcription factor II-I yes no 2 0.06781 41.302 By matching By MS/MS 1 4 0.59097 0.63009 19.449 5 Median NaN NaN NaN 0 0 Median 0.82923 0.83217 NaN 1 0 Median 0.54941 0.60394 18.594 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23833000 15292000 8540600 0 0 0 929290 504970 424320 22904000 14787000 8116300 0 0 0 0 0 0 0 0 0 28856 2642 30343 151277;151278;151279;151280;151281 152155 152155 1 RPFVAINYAAIR RQVCKNTLRLRQAARRPFVAINYAAIRAEC AARRPFVAINYAAIRAECKMLLNS______ R R P I R A 3 2 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 1 0 0 12 1 1389.7881 E7EQY4;E7EV10;Q9BTC8;D6W5A2 E7EQY4 494 505 MTA3 Metastasis-associated protein MTA3 yes no 2;3 1.4224E-79 224.86 By MS/MS By matching 3 1 0.95401 1.0269 4.3039 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94354 1.0191 5.2224 3 2 Median NaN NaN NaN 0 0 Median 0.9646 1.0348 NaN 1 0 Median NaN NaN NaN 0 0 Median 32083000 16977000 15106000 0 0 0 0 0 0 28392000 15058000 13335000 0 0 0 3691000 1919400 1771600 0 0 0 28857 881 30344 151282;151283;151284;151285 152156;152157;152158;152159 152159 4 RPGEEGTVMSLAGK ITPCLALGGELVYHRRPGEEGTVMSLAGKY RRPGEEGTVMSLAGKYTLNNWLATVTLGQA R R P G K Y 1 1 0 0 0 0 2 3 0 0 1 1 1 0 1 1 1 0 0 1 0 0 14 1 1430.7188 O96008;K7EKG4 O96008 240 253 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 2;3 2.1908E-08 142.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 8 1.0872 1.0203 17.498 18 Median 0.90836 0.97362 5.4289 2 0 Median 1.1993 1.131 2.335 2 0 Median 1.1153 1.2659 9.9877 3 0 Median 1.1745 1.0222 9.7868 3 0 Plateau NaN NaN NaN 0 0 Median 1.0907 0.92819 19.402 8 1 Median 175090000 86403000 88687000 93253000 47007000 46246000 20111000 9518100 10593000 14689000 7289200 7399900 9963800 4558500 5405300 0 0 0 37072000 18030000 19043000 28858 1806 30345;30346 151286;151287;151288;151289;151290;151291;151292;151293;151294;151295;151296;151297;151298;151299;151300;151301;151302;151303 152160;152161;152162;152163;152164;152165;152166;152167;152168;152169;152170;152171;152172;152173;152174;152175;152176;152177;152178;152179;152180 152172 577 21 RPGGQHGGDWSWR HIQDGALRLTTEFVKRPGGQHGGDWSWRVT VKRPGGQHGGDWSWRVTVEPQDSGTSALPL K R P W R V 0 2 0 1 0 1 0 4 1 0 0 0 0 0 1 1 0 2 0 0 0 0 13 1 1494.6865 Q13724;A0A3B3ITC1;C9JDQ1;A0A3B3IRI7;A0A3B3ITU6;B8ZZE2 Q13724 175 187 MOGS Mannosyl-oligosaccharide glucosidase yes no 3 0.00018742 65.295 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2818 1.2002 20.867 4 Median 0.91249 0.93558 NaN 1 0 Median 1.2321 1.219 NaN 1 0 Median 1.3485 1.5582 NaN 1 0 Median 1.3336 1.1817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11923000 5202800 6720300 2729700 1166200 1563500 4494600 1987200 2507300 2158700 950780 1208000 2540100 1098600 1441500 0 0 0 0 0 0 28859 2835 30347 151304;151305;151306;151307 152181;152182;152183;152184;152185 152185 5 RPGGWVEK LIFVYDEVRKLIIRRRPGGWVEKETYY___ RKLIIRRRPGGWVEKETYY___________ R R P E K E 0 1 0 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 8 1 927.49265 P05023 P05023 1012 1019 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.0074157 77.058 By matching By MS/MS 1 4 1.0043 0.97298 4.8842 5 Median 1.0432 1.0302 NaN 1 0 Median 1 0.96422 4.2465 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8404000 4196400 4207500 100570 43250 57321 8303400 4153200 4150200 0 0 0 0 0 0 0 0 0 0 0 0 28860 1857 30348 151308;151309;151310;151311;151312 152186;152187 152187 2 RPGNFSHSLDMK ______________________________ RQRRPGNFSHSLDMKSGPLPPGGWDDSHLD R R P M K S 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 2 0 0 0 0 0 0 12 1 1387.6667 O00400;A0A2R8YEX5;A0A2R8Y359;H7C532;A0A2R8Y5I5;A0A2R8Y6H1;A0A2R8YF57 O00400 15 26 SLC33A1 Acetyl-coenzyme A transporter 1 yes no 3 0.045844 27.149 By MS/MS 2 1.3697 1.3061 22.962 2 Median NaN NaN NaN 0 0 Median 1.3697 1.3061 22.962 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4301800 1702600 2599300 0 0 0 4301800 1702600 2599300 0 0 0 0 0 0 0 0 0 0 0 0 28861 1459 30349 151313;151314 152188;152189 152189 1 RPGSLPAPPPSQLPR SGSARRKGKDQPESRRPGSLPAPPPSQLPR RPGSLPAPPPSQLPRNPGEQASNTNGTHQF R R P P R N 1 2 0 0 0 1 0 1 0 0 2 0 0 0 6 2 0 0 0 0 0 0 15 1 1568.8787 A0A2R8Y852 A0A2R8Y852 433 447 no no 3 0.0010642 36.029 By MS/MS By MS/MS 1 2 0.48151 0.51499 14.33 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36839 0.46537 NaN 1 0 Median 0.62935 0.56991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16118000 10374000 5743700 0 0 0 0 0 0 13336000 8564600 4771300 2781600 1809200 972450 0 0 0 0 0 0 28862 388 30350 151315;151316;151317 152190;152191;152192 152190 3 RPGVTGENSNEVAK PSPPAVSIASFVTVKRPGVTGENSNEVAKL KRPGVTGENSNEVAKLVNTLNTIPSLGQSP K R P A K L 1 1 2 0 0 0 2 2 0 0 0 1 0 0 1 1 1 0 0 2 0 0 14 1 1456.727 Q7Z3K3;M0R2X2 Q7Z3K3 306 319 POGZ Pogo transposable element with ZNF domain yes no 3 0.02683 18.457 By MS/MS By matching 1 1 0.83482 0.83674 1.0496 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7344 0.83056 NaN 1 0 Median 0.94898 0.84298 NaN 1 0 Median 1071700 628060 443680 0 0 0 0 0 0 0 0 0 0 0 0 927560 564110 363450 144180 63953 80229 28863 3241 30351 151318;151319 152193;152194 152193 2 RPGYGAYDAFK SLFQRTAWVFDDKYKRPGYGAYDAFKHAVS DKYKRPGYGAYDAFKHAVSDPSILDSLDLN K R P F K H 2 1 0 1 0 0 0 2 0 0 0 1 0 1 1 0 0 0 2 0 0 0 11 1 1243.5986 P05198;G3V4T5;H0YJS4 P05198 144 154 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2;3 6.9936E-05 143.7 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 3 3 0.99558 0.94442 14.375 14 Median 0.95751 0.96467 17.847 5 0 Median 0.87112 0.8082 7.7264 3 0 Median 1.0757 1.1636 7.43 3 3 Plateau 1.0106 0.93522 4.2156 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 219100000 110060000 109040000 62454000 32108000 30346000 19729000 10279000 9449600 80480000 38173000 42307000 56440000 29504000 26936000 0 0 0 0 0 0 28864 1862 30352 151320;151321;151322;151323;151324;151325;151326;151327;151328;151329;151330;151331;151332;151333 152195;152196;152197;152198;152199;152200;152201;152202;152203;152204;152205;152206;152207;152208;152209;152210 152207 15 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK AFDGIIFQGQSLKIRRPHDYQPLPGMSENP VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV R R P H K L 1 1 1 2 0 1 1 2 2 0 1 1 1 0 6 4 1 0 2 6 0 0 33 1 3558.7566 P26368;K7ENG2 P26368 228 260 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3;4;5 9.8947E-14 65.134 By MS/MS By matching By MS/MS 4 1 1 0.37446 0.41982 38.098 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37012 0.41546 44.309 4 3 Median 0.44592 0.41845 NaN 1 0 Median 0.47647 0.49173 NaN 1 0 Median NaN NaN NaN 0 0 Median 93970000 78499000 15472000 0 0 0 0 0 0 88125000 74066000 14060000 563370 391510 171860 5281400 4041300 1240000 0 0 0 28865 2143 30353;30354 151334;151335;151336;151337;151338;151339 152211;152212;152213;152214;152215;152216 152213 906 6 RPHIAQVPEPPPK QKRPLVTPQAAPEPKRPHIAQVPEPPPKVA PKRPHIAQVPEPPPKVANPPLTPASDRKKT K R P P K V 1 1 0 0 0 1 1 0 1 1 0 1 0 0 5 0 0 0 0 1 0 0 13 1 1464.8201 Q9Y6X8 Q9Y6X8 420 432 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 3 0.00057748 47.915 By MS/MS 1 0.55975 0.53793 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55975 0.53793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 682780 410270 272510 0 0 0 0 0 0 0 0 0 682780 410270 272510 0 0 0 0 0 0 28866 4500 30355 151340 152217 152217 1 RPHNAIFVNFEDEEVPK PPISGENLIGLSRARRPHNAIFVNFEDEEV HNAIFVNFEDEEVPKQPLEAAAQTWRRVCT R R P P K Q 1 1 2 1 0 0 3 0 1 1 0 1 0 2 2 0 0 0 0 2 0 0 17 1 2040.0065 Q9Y5Q8;Q5T7U1;H7BY84;Q5T7U4;Q5T7U0 Q9Y5Q8 212 228 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 0.025922 25.167 By MS/MS 2 0.5654 0.63197 13.123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5654 0.63197 13.123 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9722000 5725300 3996700 0 0 0 0 0 0 9722000 5725300 3996700 0 0 0 0 0 0 0 0 0 28867 4466 30356 151341;151342 152218;152219 152219 2 RPHTPTPGIYMGR ELDGRRIRVDFSITKRPHTPTPGIYMGRPT TKRPHTPTPGIYMGRPTYGSSRRRDYYDRG K R P G R P 0 2 0 0 0 0 0 2 1 1 0 0 1 0 3 0 2 0 1 0 0 0 13 1 1481.7562 P62995;H7BXF3;H7C2L4 P62995 198 210 TRA2B Transformer-2 protein homolog beta yes no 3 6.8328E-05 78.324 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 3 0.74974 0.70476 27.352 11 Median 0.36668 0.41338 NaN 1 0 Median 0.95783 0.8945 NaN 1 0 Median 0.62245 0.6438 7.4575 2 1 Median 0.75051 0.66066 NaN 1 0 Median 0.74974 0.81105 3.0899 3 0 Median 0.8013 0.70476 37.604 3 0 Median 48203000 26784000 21419000 1988900 1173900 815000 1644400 636830 1007500 14941000 8676900 6264000 2222700 1236900 985800 10476000 5933900 4541600 16931000 9125000 7805600 28868 2614 30357 151343;151344;151345;151346;151347;151348;151349;151350;151351;151352;151353 152220;152221;152222;152223;152224;152225;152226;152227;152228 152222 9 RPHTPTPGIYMGRPTYGSSR ELDGRRIRVDFSITKRPHTPTPGIYMGRPT TPGIYMGRPTYGSSRRRDYYDRGYDRGYDD K R P S R R 0 3 0 0 0 0 0 3 1 1 0 0 1 0 4 2 3 0 2 0 0 0 20 2 2230.1066 P62995;H7BXF3;H7C2L4 P62995 198 217 TRA2B Transformer-2 protein homolog beta yes no 3;4;5 4.2778E-11 79.511 By MS/MS By MS/MS 9 1 0.57694 0.71184 21.015 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56886 0.70133 10.745 9 1 Median 1.2452 1.2845 NaN 1 1 Median 336050000 212950000 123100000 0 0 0 0 0 0 0 0 0 0 0 0 332550000 211570000 120980000 3497400 1379300 2118100 28869 2614 30358;30359 151354;151355;151356;151357;151358;151359;151360;151361;151362;151363 152229;152230;152231;152232;152233;152234;152235;152236;152237;152238 152233 1278 10 RPHVFESNPSIR GMAAAAAVATGKKRKRPHVFESNPSIRKRQ KRKRPHVFESNPSIRKRQQTRLLRKLRATL K R P I R K 0 2 1 0 0 0 1 0 1 1 0 0 0 1 2 2 0 0 0 1 0 0 12 1 1437.7477 Q16656;C9JP85 Q16656 93 104 NRF1 Nuclear respiratory factor 1 yes no 3 0.0012773 42.095 By MS/MS By MS/MS 1 2 1.3872 1.2764 30.403 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74754 0.80739 NaN 1 0 Median 1.4619 1.3536 8.3038 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5974700 2322700 3652000 0 0 0 0 0 0 3824900 1411500 2413300 2149800 911210 1238600 0 0 0 0 0 0 28870 2992 30360 151364;151365;151366 152239;152240;152241 152239 3 RPILQLSPPGPR ______________________________ PGRRPILQLSPPGPRGSTPGRDPEPEPDTE R R P P R G 0 2 0 0 0 1 0 1 0 1 2 0 0 0 4 1 0 0 0 0 0 0 12 1 1329.7881 Q8N3X1;F5GXL1 Q8N3X1 12 23 FNBP4 Formin-binding protein 4 yes no 2 0.0027497 71.221 By MS/MS 1 0.34323 0.41744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34323 0.41744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6259300 4231400 2027900 0 0 0 0 0 0 6259300 4231400 2027900 0 0 0 0 0 0 0 0 0 28871 3370 30361 151367 152242 152242 1 RPILQSLLLPVMDQDYAK PIFGKWSQVAPPVLKRPILQSLLLPVMDQD LQSLLLPVMDQDYAKVLLLIDDEYKVTAFP K R P A K V 1 1 0 2 0 2 0 0 0 1 4 1 1 0 2 1 0 0 1 1 0 0 18 1 2099.1449 Q8N766 Q8N766 621 638 EMC1 ER membrane protein complex subunit 1 yes yes 3 0.014243 19.036 By MS/MS By matching 3 1 0.77839 0.79552 85.305 4 Median 0.82145 0.83783 7.3164 3 0 Median 0.1603 0.14944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7966400 4511700 3454600 3239000 1835500 1403400 4727400 2676200 2051200 0 0 0 0 0 0 0 0 0 0 0 0 28872 3392 30362 151368;151369;151370;151371 152243;152244;152245;152246 152244 4 RPILSVQR DSDVLIRDNYERAEKRPILSVQRRGSPNPF NYERAEKRPILSVQRRGSPNPFEITDRVEM K R P Q R R 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 8 1 967.5927 J3QQK2;B4DKL7;Q8NE00 J3QQK2 42 49 TMEM104 Transmembrane protein 104 yes no 2 0.039306 40.994 By MS/MS 2 1.5761 1.5334 12.892 2 Median NaN NaN NaN 0 0 Median 1.5761 1.5334 12.892 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2598900 1133800 1465100 0 0 0 2598900 1133800 1465100 0 0 0 0 0 0 0 0 0 0 0 0 28873 596 30363 151372;151373 152247 152247 1 RPILTIITLEDSSGNLLGR YNYMCNSSCMGGMNRRPILTIITLEDSSGN TIITLEDSSGNLLGRNSFEVRVCACPGRDR R R P G R N 0 2 1 1 0 0 1 2 0 3 4 0 0 0 1 2 2 0 0 0 0 0 19 1 2067.1688 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22 A0A0U1RQC9 210 228 TP53 Cellular tumor antigen p53 yes no 2;3 3.7665E-25 144.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 7 10 0.94133 0.83855 17.987 24 Median NaN NaN NaN 0 0 Median 1.0606 0.97334 6.7375 2 0 Median 1.0237 1.1343 7.1262 3 0 Plateau 0.95375 0.88355 2.0712 2 1 Median 0.70024 0.76642 6.5028 7 0 Median 0.95421 0.83855 20.73 10 0 Median 239060000 125370000 113700000 0 0 0 3147500 1291600 1855900 60636000 29166000 31469000 10280000 5184200 5095900 103560000 58790000 44774000 61437000 30933000 30504000 28874 299 30364 151374;151375;151376;151377;151378;151379;151380;151381;151382;151383;151384;151385;151386;151387;151388;151389;151390;151391;151392;151393;151394;151395;151396;151397;151398;151399 152248;152249;152250;152251;152252;152253;152254;152255;152256;152257;152258;152259;152260;152261;152262;152263;152264;152265;152266;152267;152268;152269;152270;152271;152272 152261 24 RPIQVMMMGSAR LEAGALPNAPNSYGRRPIQVMMMGSARVAE YGRRPIQVMMMGSARVAELLLLHGAEPNCA R R P A R V 1 2 0 0 0 1 0 1 0 1 0 0 3 0 1 1 0 0 0 1 0 0 12 1 1375.6887 J3QRG6;P42771 J3QRG6 47 58 CDKN2A Cyclin-dependent kinase inhibitor 2A yes no 2;3 0.00014469 83.397 By MS/MS By MS/MS By matching 3 1 2 1.0229 1.0642 19.897 6 Median 0.97296 1.0198 21.196 3 1 Median NaN NaN NaN 0 0 Median 1.0226 1.1105 NaN 1 0 Median 1.3041 1.1809 30.31 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88612000 45404000 43207000 79864000 42028000 37836000 0 0 0 3343700 1916400 1427300 5403500 1459700 3943800 0 0 0 0 0 0 28875 1350 30365 151400;151401;151402;151403;151404;151405 152273;152274;152275;152276;152277 152274 5 RPISADSAIMNPASK QVVIIDMNDPSNPIRRPISADSAIMNPASK RPISADSAIMNPASKVIALKGIKESGKTLQ R R P S K V 3 1 1 1 0 0 0 0 0 2 0 1 1 0 2 3 0 0 0 0 0 0 15 1 1556.7981 A0A087WVQ6;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 64 78 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 4.8616E-11 150.49 By MS/MS By MS/MS By MS/MS By MS/MS 8 6 7 3 0.86221 0.87053 29.537 22 Median 0.81092 0.8241 25.239 6 1 Median 1.0132 0.94927 19.21 6 0 Median 0.52677 0.63155 41.6 7 2 Median 1.0364 1.0005 5.9219 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 324670000 173740000 150930000 123150000 65717000 57432000 117600000 57060000 60540000 63686000 40929000 22757000 20232000 10030000 10202000 0 0 0 0 0 0 28876 44 30366;30367 151406;151407;151408;151409;151410;151411;151412;151413;151414;151415;151416;151417;151418;151419;151420;151421;151422;151423;151424;151425;151426;151427;151428;151429 152278;152279;152280;152281;152282;152283;152284;152285;152286;152287;152288;152289;152290;152291;152292;152293;152294;152295;152296;152297;152298;152299;152300;152301;152302;152303;152304;152305;152306;152307;152308;152309;152310;152311;152312;152313;152314;152315;152316;152317;152318;152319;152320;152321;152322;152323;152324 152302 20 47 RPITGTHLYQYR RWEMVMDKKHFKLWRRPITGTHLYQYRVFG LWRRPITGTHLYQYRVFGTYTDVTPRQFFN R R P Y R V 0 2 0 0 0 1 0 1 1 1 1 0 0 0 1 0 2 0 2 0 0 0 12 1 1503.7946 Q9NQZ5;C9JTD3 Q9NQZ5 155 166 STARD7 StAR-related lipid transfer protein 7, mitochondrial yes no 3 0.00030241 55.04 By MS/MS By MS/MS 1 1 1.3226 1.3166 17.435 2 Median 1.0811 1.1639 NaN 1 0 Median 1.618 1.4893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16412000 7095400 9316500 11877000 5716000 6161300 4534600 1379400 3155200 0 0 0 0 0 0 0 0 0 0 0 0 28877 4072 30368 151430;151431 152325;152326;152327 152325 3 RPIVEFSLEDR LRLINNNPEIFGPLKRPIVEFSLEDRRKLK GPLKRPIVEFSLEDRRKLKMKELRIQRSLQ K R P D R R 0 2 0 1 0 0 2 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 11 1 1359.7147 Q9NW13 Q9NW13 572 582 RBM28 RNA-binding protein 28 yes yes 2;3 0.00028051 60.49 By MS/MS By matching 2 1 1.0611 0.95919 40.593 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92008 0.99968 57.308 2 1 Median 1.0611 0.95919 NaN 1 0 Median 9196600 5448900 3747700 0 0 0 0 0 0 0 0 0 0 0 0 8889200 5307900 3581300 307460 141010 166450 28878 4145 30369 151432;151433;151434 152328;152329;152330 152329 3 RPKEEEWDPEYTPK GTNTGPNNSNTTFQKRPKEEEWDPEYTPKS KRPKEEEWDPEYTPKSKKYFLHDDRDDGVD K R P P K S 0 1 0 1 0 0 4 0 0 0 0 2 0 0 3 0 1 1 1 0 0 0 14 2 1802.8475 Q9NYF8;H0YF14 Q9NYF8 829 842 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00023179 63.257 By matching By MS/MS By MS/MS 1 1 1 0.57822 0.68139 13.887 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54041 0.61579 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57822 0.68139 NaN 1 0 Median 0.78988 0.81038 NaN 1 1 Median 22753000 13348000 9405200 0 0 0 0 0 0 4908100 2970100 1938000 0 0 0 16412000 9711000 6701100 1432600 666440 766120 28879 4175 30370 151435;151436;151437 152331;152332;152333 152332 3 RPLDDGVGNQLGALVHQR TPLVDPSVYGYGVQKRPLDDGVGNQLGALV DDGVGNQLGALVHQRTVITEEFKVPDKMVG K R P Q R T 1 2 1 2 0 2 0 3 1 0 3 0 0 0 1 0 0 0 0 2 0 0 18 1 1944.029 Q96I24 Q96I24 58 75 FUBP3 Far upstream element-binding protein 3 yes yes 3;4 1.2472E-12 109.36 By MS/MS By MS/MS By MS/MS By MS/MS 1 5 4 2 0.95904 1.0035 36.437 12 Median 0.9718 0.95744 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90406 0.98508 29.266 5 1 Median 1.1798 1.0924 37.593 4 1 Median 0.66968 0.72365 64.938 2 0 Median NaN NaN NaN 0 0 Median 207690000 105370000 102320000 15575000 7606200 7968800 0 0 0 155650000 78946000 76700000 10850000 5020200 5829500 25618000 13795000 11823000 0 0 0 28880 3673 30371 151438;151439;151440;151441;151442;151443;151444;151445;151446;151447;151448;151449 152334;152335;152336;152337;152338;152339;152340;152341;152342;152343;152344;152345;152346;152347;152348;152349;152350;152351 152340 17 RPLEATFDLGIPQAVLPPLPK ATAAAMTQSAVKSLKRPLEATFDLGIPQAV FDLGIPQAVLPPLPKRPALEKTNGATAVFN K R P P K R 2 1 0 1 0 1 1 1 0 1 4 1 0 1 5 0 1 0 0 1 0 0 21 1 2271.2991 C9JP00;A0A0A0MQX8;Q9NR56;Q86VM6 C9JP00 279 299 MBNL1 Muscleblind-like protein 1 yes no 2;3 8.3328E-07 49.929 By matching By MS/MS 1 2 0.42803 0.46238 10.594 3 Median NaN NaN NaN 0 0 Median 0.49556 0.46238 NaN 1 0 Median 0.40978 0.43982 14.415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6254900 4365500 1889400 0 0 0 622170 408490 213680 5632700 3957000 1675800 0 0 0 0 0 0 0 0 0 28881 150 30372 151450;151451;151452 152352;152353;152354 152352 3 RPLEDGDQPDAK GTSLNSNDYGYGGQKRPLEDGDQPDAKKVA GQKRPLEDGDQPDAKKVAPQNDSFGTQLPP K R P A K K 1 1 0 3 0 1 1 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 1 1339.6368 Q96AE4;E9PEB5 Q96AE4 65 76 FUBP1 Far upstream element-binding protein 1 yes no 2;3 9.2573E-53 235.01 By MS/MS By MS/MS By MS/MS By matching 1 4 3 2 0.83612 0.85636 9.4 10 Median 0.83429 0.84753 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79667 0.85945 13.927 4 0 Median 0.91444 0.86528 3.4945 3 0 Median 0.73179 0.81596 11.01 2 0 Median NaN NaN NaN 0 0 Median 36337000 18883000 17454000 663540 315320 348220 0 0 0 30831000 16048000 14783000 4151500 2125400 2026100 690960 394090 296870 0 0 0 28882 3599 30373 151453;151454;151455;151456;151457;151458;151459;151460;151461;151462 152355;152356;152357;152358;152359;152360;152361;152362;152363;152364;152365;152366;152367;152368;152369;152370;152371;152372;152373;152374 152358 20 RPLEDGDQPDAKK GTSLNSNDYGYGGQKRPLEDGDQPDAKKVA QKRPLEDGDQPDAKKVAPQNDSFGTQLPPM K R P K K V 1 1 0 3 0 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 13 2 1467.7318 Q96AE4;E9PEB5 Q96AE4 65 77 FUBP1 Far upstream element-binding protein 1 yes no 2;3 2.7702E-05 85.554 By matching By MS/MS By MS/MS 2 2 1 0.79441 0.93193 3.6252 4 Linear 0.79298 0.8734 2.3502 2 0 Median NaN NaN NaN 0 0 Median 0.80234 0.91502 3.4981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15460000 8181300 7279000 339290 173170 166120 0 0 0 15121000 8008100 7112800 0 0 0 0 0 0 0 0 0 28883 3599 30374 151463;151464;151465;151466;151467 152375;152376;152377;152378;152379;152380 152377 6 RPLEMEQQQAYRPEMK DTQVIKQENESGYERRPLEMEQQQAYRPEM PLEMEQQQAYRPEMKTEMKQGAPTSFLPPE R R P M K T 1 2 0 0 0 3 3 0 0 0 1 1 2 0 2 0 0 0 1 0 0 0 16 2 2032.9823 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0QYZ0;M0QZV6;M0R0K8;M0R203 Q9BUJ2 127 142 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3;4 2.5054E-10 115.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 4 6 0.85773 0.96082 29.084 19 Median 0.79142 0.82491 31.453 2 0 Median 0.93719 1.141 2.5026 2 0 Median 0.83191 0.97884 19.098 3 0 Median 1.1081 1.1195 15.187 2 0 Median 0.52519 0.61438 30.905 4 0 Median 0.90352 0.78319 26.662 6 0 Median 125980000 74233000 51746000 6353200 3272300 3080900 3221500 1621300 1600200 20862000 12412000 8450400 4487400 2067100 2420300 83361000 51066000 32294000 7694200 3794100 3900100 28884 3840 30375;30376 151468;151469;151470;151471;151472;151473;151474;151475;151476;151477;151478;151479;151480;151481;151482;151483;151484;151485;151486 152381;152382;152383;152384;152385;152386;152387;152388;152389;152390;152391;152392;152393 152383 1836 13 RPLFLAPDFDR KKVSQWWERLTKQEKRPLFLAPDFDRWLDE KQEKRPLFLAPDFDRWLDESDAEMELRAKE K R P D R W 1 2 0 2 0 0 0 0 0 0 2 0 0 2 2 0 0 0 0 0 0 0 11 1 1345.7143 Q9P035;H3BS72;H3BPZ1 Q9P035 99 109 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2;3 4.8001E-05 112.13 By MS/MS By MS/MS By MS/MS 5 3 1 0.84009 0.91228 23.771 9 Median 0.76258 0.8287 27.959 5 0 Median 1.0647 0.99793 21.826 3 0 Median 0.84009 0.92326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200410000 104660000 95752000 112220000 61063000 51153000 78504000 38452000 40052000 9695000 5148200 4546800 0 0 0 0 0 0 0 0 0 28885 4200 30377 151487;151488;151489;151490;151491;151492;151493;151494;151495 152394;152395;152396;152397;152398;152399;152400;152401;152402;152403;152404;152405;152406;152407 152396 14 RPLHSAQAVDVASASNFR ______________________________ HSAQAVDVASASNFRAFELLHLHLDLRAEF R R P F R A 4 2 1 1 0 1 0 0 1 0 1 0 0 1 1 3 0 0 0 2 0 0 18 1 1924.9868 Q9H4A4;A6NKB8 Q9H4A4 15 32 RNPEP Aminopeptidase B yes no 3;4 9.1834E-14 123.59 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.85878 0.85912 16.899 7 Median 0.8028 0.79094 2.2647 2 0 Median 0.99973 0.90796 7.8193 2 0 Median 0.7095 0.79175 27.004 2 0 Median 1.1749 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117740000 63604000 54136000 57793000 32414000 25379000 50876000 25254000 25623000 8331900 5522000 2809900 738140 414130 324010 0 0 0 0 0 0 28886 3964 30378 151496;151497;151498;151499;151500;151501;151502 152408;152409;152410;152411;152412;152413;152414 152409 6 RPLIDQVVQTALSETQDPEEVSVTVK PELWGSVLLESNPYRRPLIDQVVQTALSET LSETQDPEEVSVTVKAFMTADLPNELIELL R R P V K A 1 1 0 2 0 3 3 0 0 1 2 1 0 0 2 2 3 0 0 5 0 0 26 1 2880.508 A0A087WVQ6;Q00610 A0A087WVQ6 972 997 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 3.4059E-13 53.865 By MS/MS 2 0.55998 0.53549 72.661 2 Median NaN NaN NaN 0 0 Median 0.55998 0.53549 72.661 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7935600 4428600 3507100 0 0 0 7935600 4428600 3507100 0 0 0 0 0 0 0 0 0 0 0 0 28887 44 30379 151503;151504 152415;152416 152416 2 RPLIFDTNEFHIPLVT FKLLHKADRDPNPPKRPLIFDTNEFHIPLV PLIFDTNEFHIPLVT_______________ K R P V T - 0 1 1 1 0 0 1 0 1 2 2 0 0 2 2 0 2 0 0 1 0 0 16 1 1911.0254 O14802 O14802 1375 1390 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 3 0.079777 3.9037 By MS/MS 1 0.715 0.71411 NaN 1 Median 0.715 0.71411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 720970 364810 356150 720970 364810 356150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28888 1496 30380 151505 152417 152417 1 RPLILQLIFSK VGRDFLPRGSGIVTRRPLILQLIFSKTEHA IVTRRPLILQLIFSKTEHAEFLHCKSKKFT R R P S K T 0 1 0 0 0 1 0 0 0 2 3 1 0 1 1 1 0 0 0 0 0 0 11 1 1326.8387 P50570 P50570 67 77 DNM2 Dynamin-2 yes yes 2;3 0.002412 57.598 By matching By MS/MS By MS/MS By matching By matching By matching 2 2 3 1 1 1 0.91685 0.94951 18.368 10 Median 0.76797 0.79457 30.688 2 0 Median 0.90535 0.9039 1.4672 2 0 Median 0.92059 1.0455 16.638 3 0 Median 0.91313 0.87753 NaN 1 0 Median 1.1075 1.235 NaN 1 0 Median 1.3131 1.0613 NaN 1 0 Median 17296000 8949200 8347000 2437300 1428800 1008400 9236700 4717600 4519100 5143300 2570400 2572900 68453 33459 34994 331360 168620 162740 79147 30301 48846 28889 2417 30381 151506;151507;151508;151509;151510;151511;151512;151513;151514;151515 152418;152419;152420;152421 152419 4 RPLILQLVHVSQEDK VGRDLLPRGTGIVTRRPLILQLVHVSQEDK RPLILQLVHVSQEDKRKTTGEENGVEAEEW R R P D K R 0 1 0 1 0 2 1 0 1 1 3 1 0 0 1 1 0 0 0 2 0 0 15 1 1774.0101 O00429;F8VZ52;F8W1W3;B4DDQ3;B4DPZ9;H0YHY4;F8VR28;F8VYL3 O00429 61 75 DNM1L Dynamin-1-like protein yes no 3 7.1412E-05 68.044 By MS/MS By matching By matching 1 1 1 0.84715 0.74927 16.697 3 Median 0.62317 0.64047 NaN 1 0 Median 0.89349 0.89421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84715 0.74927 NaN 1 0 Median 18719000 11201000 7518000 16673000 10136000 6536300 1783400 925160 858230 0 0 0 0 0 0 0 0 0 262620 139130 123490 28890 1463 30382 151516;151517;151518 152422 152422 1 RPLILQLVHVSQEDKR VGRDLLPRGTGIVTRRPLILQLVHVSQEDK PLILQLVHVSQEDKRKTTGEENGVEAEEWG R R P K R K 0 2 0 1 0 2 1 0 1 1 3 1 0 0 1 1 0 0 0 2 0 0 16 2 1930.1112 O00429;F8VZ52;F8W1W3;B4DDQ3;B4DPZ9;H0YHY4;F8VR28;F8VYL3 O00429 61 76 DNM1L Dynamin-1-like protein yes no 4 4.0405E-05 56.514 By MS/MS By matching 1 1 1.2749 1.3849 79.732 2 Median 0.78125 0.78805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0804 2.4337 NaN 1 0 Median NaN NaN NaN 0 0 Median 10239000 5437500 4801400 7863900 4611600 3252300 0 0 0 0 0 0 0 0 0 2375000 825930 1549100 0 0 0 28891 1463 30383 151519;151520 152423;152424 152424 2 RPLKNDEL PGAEPEQKEQSTGQKRPLKNDEL_______ EQSTGQKRPLKNDEL_______________ K R P E L - 0 1 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 8 2 983.53999 A0A087X054;A0A494C039;Q9Y4L1 A0A087X054 930 937 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.013338 89.55 By matching By MS/MS By matching 1 1 1 1.0683 1.1058 16.618 3 Median 1.0683 1.1058 NaN 1 0 Median 1.0317 0.96267 NaN 1 0 Median 1.165 1.3402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9236500 4637800 4598800 1537300 724400 812940 7517100 3834500 3682600 182100 78851 103250 0 0 0 0 0 0 0 0 0 28892 101 30384 151521;151522;151523 152425;152426;152427;152428 152426 4 RPLLGLVLTPTR QELDDKSATCKAYPKRPLLGLVLTPTRELA YPKRPLLGLVLTPTRELAVQVKQHIDAVAR K R P T R E 0 2 0 0 0 0 0 1 0 0 4 0 0 0 2 0 2 0 0 1 0 0 12 1 1334.8398 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 343 354 DDX24 ATP-dependent RNA helicase DDX24 yes no 2;3 0.00084011 45.915 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 0.9043 0.91166 9.9569 6 Median NaN NaN NaN 0 0 Median 0.86811 0.83693 NaN 1 0 Median 0.86603 1.0007 11.893 2 0 Median 1.0502 1.0282 NaN 1 0 Median 0.83149 0.90343 NaN 1 0 Median 0.97232 0.87897 NaN 1 0 Median 6597600 3486800 3110800 0 0 0 252020 129470 122550 4520800 2347400 2173400 139680 71753 67926 1245100 727500 517580 439980 210640 229350 28893 1118 30385 151524;151525;151526;151527;151528;151529 152429;152430 152430 2 RPLLLNSVLLR DLELRLARFEQLISRRPLLLNSVLLRQNPH LISRRPLLLNSVLLRQNPHHVHEWHKRVAL R R P L R Q 0 2 1 0 0 0 0 0 0 0 5 0 0 0 1 1 0 0 0 1 0 0 11 1 1292.8292 Q9HCS7 Q9HCS7 341 351 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 3 0.020853 23.376 By MS/MS By matching 1 1 0.92434 1.0357 12.304 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82164 0.94939 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0399 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median 2595700 1363400 1232300 0 0 0 0 0 0 1017700 645460 372250 0 0 0 1578000 717930 860070 0 0 0 28894 4032 30386 151530;151531 152431 152431 1 RPLMVLGSQALLTPTSADK PQQVQRCVEILSRAKRPLMVLGSQALLTPT VLGSQALLTPTSADKLRAAVETLGVPCFLG K R P D K L 2 1 0 1 0 1 0 1 0 0 4 1 1 0 2 2 2 0 0 1 0 0 19 1 1997.0979 M0R026;A1L0T0;M0QZX5 M0R026 178 196 ILVBL Acetolactate synthase-like protein yes no 3 0.0028554 37.237 By MS/MS 1 0.59791 0.60421 NaN 1 Median 0.59791 0.60421 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2777300 1745600 1031800 2777300 1745600 1031800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28895 492 30387 151532 152432 152432 1 RPLRPQVVTDDDGQAPEAK ______________________________ PQVVTDDDGQAPEAKDGSSFSGRVFRVTFL R R P A K D 2 2 0 3 0 2 1 1 0 0 1 1 0 0 3 0 1 0 0 2 0 0 19 2 2091.0709 Q9HDC9 Q9HDC9 11 29 APMAP Adipocyte plasma membrane-associated protein yes yes 3;4 8.3478E-07 55.437 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 0.8349 0.98463 24.622 7 Median 0.5823 0.64807 NaN 1 0 Median 0.88871 1.0013 14.136 3 1 Median 0.73298 0.85784 25.288 2 0 Median 0.67207 0.71599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25956000 13462000 12494000 5001500 2961200 2040200 13540000 6587200 6952700 4804300 2372200 2432100 2610700 1541500 1069200 0 0 0 0 0 0 28896 4039 30388 151533;151534;151535;151536;151537;151538;151539 152433;152434;152435;152436;152437;152438;152439;152440;152441;152442 152440 10 RPLTAATLFK NMWPEGKLSITEVTKRPLTAATLFKNSMIA TEVTKRPLTAATLFKNSMIALVDNLASKEP K R P F K N 2 1 0 0 0 0 0 0 0 0 2 1 0 1 1 0 2 0 0 0 0 0 10 1 1116.6655 K7EIG7;O94832;J3QRN6 K7EIG7 472 481 MYO1D Unconventional myosin-Id yes no 2 0.010788 47.603 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.87649 0.95439 5.3086 4 Median 0.84325 0.8776 NaN 1 0 Median 1.0005 0.94295 NaN 1 0 Median 0.87484 0.99342 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87813 0.96598 NaN 1 0 Median NaN NaN NaN 0 0 Median 25510000 13423000 12086000 5243900 2835200 2408600 3295100 1521400 1773700 4315500 2231900 2083700 0 0 0 12655000 6834800 5820300 0 0 0 28897 1359 30389 151540;151541;151542;151543 152443;152444;152445 152443 3 RPLVTPQAAPEPK PITLAVAGVTNHGQKRPLVTPQAAPEPKRP QKRPLVTPQAAPEPKRPHIAQVPEPPPKVA K R P P K R 2 1 0 0 0 1 1 0 0 0 1 1 0 0 4 0 1 0 0 1 0 0 13 1 1402.7932 Q9Y6X8 Q9Y6X8 407 419 ZHX2 Zinc fingers and homeoboxes protein 2 yes yes 3 0.041427 25.718 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28898 4500 30390 151544 152446 152446 1 RPMDGTYGPPAK SQQTTMYQQQQQNYKRPMDGTYGPPAKRHE NYKRPMDGTYGPPAKRHEGEMYSVPYSTGQ K R P A K R 1 1 0 1 0 0 0 2 0 0 0 1 1 0 3 0 1 0 1 0 0 0 12 1 1288.6234 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1371 1382 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.038681 16.662 By MS/MS By matching 1 1 1.0024 1.1558 55.708 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6562 0.77949 NaN 1 0 Median 1.5312 1.7138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1639900 801900 837980 0 0 0 0 0 0 1174600 640850 533730 465290 161040 304250 0 0 0 0 0 0 28899 1480 30391 151545;151546 152447 152447 1 RPMEEDGEEKSPSK VQIPPSTTYAITPMKRPMEEDGEEKSPSKK KRPMEEDGEEKSPSKKKKKIQKKEEKAEPP K R P S K K 0 1 0 1 0 0 4 1 0 0 0 2 1 0 2 2 0 0 0 0 0 0 14 2 1617.7305 Q12906 Q12906 372 385 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 0.00031004 54.598 By matching By matching By matching By MS/MS 1 2 1 3 0.62298 0.74495 17.628 7 Median 0.80327 0.88474 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60829 0.72505 3.8296 2 0 Median 0.93558 1 NaN 1 0 Median 0.62298 0.73238 14.989 3 0 Median NaN NaN NaN 0 0 Median 8431700 4889800 3541900 670450 345940 324510 0 0 0 2640000 1619700 1020300 140340 65122 75220 4980900 2859000 2121900 0 0 0 28900 2769 30392 151547;151548;151549;151550;151551;151552;151553 152448 152448 1 RPMSAYMLWLNASR KPVEVKKGKDPNAPKRPMSAYMLWLNASRE KRPMSAYMLWLNASREKIKSDHPGISITDL K R P S R E 2 2 1 0 0 0 0 0 0 0 2 0 2 0 1 2 0 1 1 0 0 0 14 1 1694.8385 Q08945;A0A0U1RRK2 Q08945 549 562 SSRP1 FACT complex subunit SSRP1 yes no 3 0.00062603 41.967 By MS/MS By matching By MS/MS 1 1 1 1.204 1.3082 27.195 3 Median 0.85472 0.87634 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3194 1.4724 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.204 1.3082 NaN 1 0 Median NaN NaN NaN 0 0 Median 7154600 2854200 4300400 1302900 647760 655110 0 0 0 819810 300640 519170 0 0 0 5032000 1905800 3126100 0 0 0 28901 2743 30393 151554;151555;151556 152449;152450;152451 152451 3 RPMSDPSWNR RLVRSRSSDIVSSVRRPMSDPSWNRRPGNE VSSVRRPMSDPSWNRRPGNEERELPPAAAI R R P N R R 0 2 1 1 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 0 0 10 1 1244.572 Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86 911 920 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 0.048983 25.437 By MS/MS 1 0.63767 0.64395 NaN 1 Median NaN NaN NaN 0 0 Median 0.63767 0.64395 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 726810 233710 493100 0 0 0 726810 233710 493100 0 0 0 0 0 0 0 0 0 0 0 0 28902 2907 30394 151557 152452 152452 1 RPMSGEYGPASVPEYEAR REALKILALSQNEPKRPMSGEYGPASVPEY SGEYGPASVPEYEARTEDNQSSEMQLTIDS K R P A R T 2 2 0 0 0 0 3 2 0 0 0 0 1 0 3 2 0 0 2 1 0 0 18 1 1994.9156 D6RB01;Q9Y6X4 D6RB01 215 232 FAM169A Soluble lamin-associated protein of 75 kDa yes no 3 1.4071E-11 100.97 By matching By MS/MS By MS/MS By matching By matching 1 3 1 1 1 0.73959 0.80191 37.992 7 Median 0.73959 0.8217 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.58967 0.68136 32.429 3 0 Median 1.803 1.5976 NaN 1 0 Median 0.47961 0.52111 NaN 1 0 Median 0.88708 0.80191 NaN 1 0 Median 50498000 28514000 21984000 3353200 1791500 1561800 0 0 0 39017000 22805000 16212000 1133200 447940 685270 5530600 2840500 2690100 1463500 628390 835130 28903 814 30395;30396 151558;151559;151560;151561;151562;151563;151564 152453;152454;152455;152456;152457 152456 302 5 RPNDIYVNMK VEYTLRKRLPSRLPRRPNDIYVNMKTDFKA SRLPRRPNDIYVNMKTDFKAQLARCQKLLD R R P M K T 0 1 2 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 1 0 0 10 1 1248.6285 C9JYM0;O75817 C9JYM0 33 42 POP7 Ribonuclease P protein subunit p20 yes no 2;3 0.0049574 58.676 By matching By MS/MS By MS/MS By matching 1 3 1 1 1.2398 1.0323 30.626 5 Median 1.5449 1.5326 NaN 1 0 Median 1.448 1.2772 40.769 2 1 Median 0.81162 0.84612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2398 1.0323 NaN 1 0 Median 9702300 4474600 5227700 3510400 1256500 2253900 2420400 1103000 1317400 3297900 1910100 1387800 0 0 0 0 0 0 473580 204950 268630 28904 729 30397 151565;151566;151567;151568;151569;151570 152458;152459;152460;152461 152458 3 RPNFKPDIQEIPK TKWGETTFMAKLGQKRPNFKPDIQEIPKKP QKRPNFKPDIQEIPKKPKVEEESTGDPFGF K R P P K K 0 1 1 1 0 1 1 0 0 2 0 2 0 1 3 0 0 0 0 0 0 0 13 2 1580.8675 Q7Z5K2 Q7Z5K2 48 60 WAPAL Wings apart-like protein homolog yes yes 3 0.00026634 64.65 By MS/MS By MS/MS 1 1 0.54866 0.62524 6.195 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52519 0.59844 NaN 1 0 Median 0.57318 0.65324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25502000 16322000 9180500 0 0 0 0 0 0 23794000 15188000 8605600 1708800 1134000 574870 0 0 0 0 0 0 28905 3249 30398 151571;151572 152462;152463;152464 152462 3 RPNKPAELIAK FINAMKEAFETFINKRPNKPAELIAKYVDS FINKRPNKPAELIAKYVDSKLRAGNKEATD K R P A K Y 2 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 0 0 0 0 0 11 2 1235.735 Q13620;K4DI93;Q13619;A0A0A0MR50 Q13620 555 565 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 2;3 0.00058104 57.598 By matching By MS/MS By matching By MS/MS By matching By matching 2 4 2 3 1 1 0.94398 1 20.307 13 Median 0.74209 0.83032 6.9469 2 0 Median 1.0347 1.0951 15.933 4 0 Median 0.62052 0.73963 13.764 2 0 Median 0.94398 1.009 12.375 3 0 Median 1.007 1.1867 NaN 1 0 Median 0.89264 0.91581 NaN 1 0 Median 14011000 7006000 7004600 1082000 586610 495410 8320600 3944200 4376400 2250300 1377800 872480 1304400 616100 688330 757430 330960 426470 295740 150300 145440 28906 1358;2832 30399 151573;151574;151575;151576;151577;151578;151579;151580;151581;151582;151583;151584;151585 152465;152466;152467;152468;152469;152470;152471;152472 152468 8 RPNKPLFTALVTQCQK HLKLFGYEPTIYYPKRPNKPLFTALVTQCQ PNKPLFTALVTQCQKMDIPFLGEMPAEPMT K R P Q K M 1 1 1 0 1 2 0 0 0 0 2 2 0 1 2 0 2 0 0 1 0 0 16 2 1900.0353 Q8NCW5;Q5T3I4;Q5T3I3 Q8NCW5 145 160 APOA1BP NAD(P)H-hydrate epimerase yes no 3 0.034744 28.956 By matching By MS/MS 1 1 0.87558 0.84129 4.17 2 Median 0.76714 0.81684 NaN 1 0 Median 0.99935 0.86646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13427000 7108100 6318900 5944500 3494400 2450000 7482600 3613700 3868900 0 0 0 0 0 0 0 0 0 0 0 0 28907 3420 30400 151586;151587 152473 152473 0 RPNNLVIGR KSDCSLFMFGSHNKKRPNNLVIGRMYDYHV GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K R P G R M 0 2 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1037.6094 Q9H7B2;Q5VXN0 Q9H7B2 99 107 RPF2 Ribosome production factor 2 homolog yes no 2 0.0011046 98.523 By MS/MS By MS/MS 1 2 1.2283 1.0942 6.2391 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92476 0.98706 NaN 1 0 Median 1.242 1.0994 0.66958 2 0 Median 12431000 5998200 6433300 0 0 0 0 0 0 0 0 0 0 0 0 9222100 4626200 4595800 3209400 1372000 1837400 28908 3980 30401 151588;151589;151590 152474;152475;152476 152474 3 RPNPDILDHER KGEEELRRLEAALVKRPNPDILDHERKRRV ALVKRPNPDILDHERKRRVELRCLELEEMM K R P E R K 0 2 1 2 0 0 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 0 11 1 1360.6848 Q9UQ35;I3L4D8;I3L0N7 Q9UQ35 52 62 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 3 4.6202E-05 75.695 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.76345 0.82302 19.502 6 Median 0.76345 0.82302 4.6522 2 1 Median 1.0566 1.0044 4.5585 2 1 Median NaN NaN NaN 0 0 Median 0.69378 0.64654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72958 0.65954 NaN 1 0 Median 15905000 9075400 6829900 7000000 3904500 3095400 8404000 4917700 3486300 0 0 0 177080 94531 82550 0 0 0 324320 158640 165680 28909 4359 30402 151591;151592;151593;151594;151595;151596 152477;152478;152479 152477 3 RPNVVLLLTDDQDEVLGGMTPLK LGGCLGVFGVAAGTRRPNVVLLLTDDQDEV TDDQDEVLGGMTPLKKTKALIGEMGMTFSS R R P L K K 0 1 1 3 0 1 1 2 0 0 5 1 1 0 2 0 2 0 0 3 0 0 23 1 2522.3414 P15586 P15586 46 68 GNS N-acetylglucosamine-6-sulfatase yes yes 3 0.021657 21.129 By MS/MS 1 1.7142 1.7196 NaN 1 Median NaN NaN NaN 0 0 Median 1.7142 1.7196 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1104700 616190 488460 0 0 0 1104700 616190 488460 0 0 0 0 0 0 0 0 0 0 0 0 28910 2019 30403 151597 152480 152480 1 RPNVVLLLTDDQDEVLGGMTPLKK LGGCLGVFGVAAGTRRPNVVLLLTDDQDEV DDQDEVLGGMTPLKKTKALIGEMGMTFSSA R R P K K T 0 1 1 3 0 1 1 2 0 0 5 2 1 0 2 0 2 0 0 3 0 0 24 2 2650.4364 P15586 P15586 46 69 GNS N-acetylglucosamine-6-sulfatase yes yes 3 0.0017006 25.935 By MS/MS 1 0.59356 0.6282 NaN 1 Median NaN NaN NaN 0 0 Median 0.59356 0.6282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4223400 2538900 1684600 0 0 0 4223400 2538900 1684600 0 0 0 0 0 0 0 0 0 0 0 0 28911 2019 30404 151598 152481;152482 152481 2 RPNYGEIPVQEHLLR GPISTSKPLTALSDKRPNYGEIPVQEHLLR RPNYGEIPVQEHLLRTSSASRPASLPRVPA K R P L R T 0 2 1 0 0 1 2 1 1 1 2 0 0 0 2 0 0 0 1 1 0 0 15 1 1819.9693 A0A494C1J1;Q69YQ0 A0A494C1J1 924 938 SPECC1L Cytospin-A yes no 3 1.7999E-05 82.102 By matching By MS/MS 1 1 0.80118 0.77835 4.9831 2 Median NaN NaN NaN 0 0 Median 0.8363 0.80627 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76753 0.7514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3759600 2200000 1559600 0 0 0 689110 375750 313360 0 0 0 3070500 1824200 1246300 0 0 0 0 0 0 28912 469 30405 151599;151600 152483 152483 1 RPPAAPENTPLVPSGVK QPLPASQTPASNQPKRPPAAPENTPLVPSG PAAPENTPLVPSGVKSWAQASVTHGAHGDG K R P V K S 2 1 1 0 0 0 1 1 0 0 1 1 0 0 5 1 1 0 0 2 0 0 17 1 1728.9523 P48634 P48634 124 140 PRRC2A Protein PRRC2A yes yes 3 7.1418E-06 57.499 By MS/MS By MS/MS 1 1 0.27291 0.29361 13.111 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22322 0.26761 NaN 1 0 Median 0.33368 0.32213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10143000 7794200 2349200 0 0 0 0 0 0 8695400 6771300 1924200 1448000 1023000 424990 0 0 0 0 0 0 28913 2363 30406 151601;151602 152484;152485 152484 2 RPPEDFETPSGERPR KLSKDLDRPESQSPKRPPEDFETPSGERPR RPPEDFETPSGERPRRRAAQVALLYLQELA K R P P R R 0 3 0 1 0 0 3 1 0 0 0 0 0 1 4 1 1 0 0 0 0 0 15 2 1768.8493 Q8WUA4;A0A087WZD8 Q8WUA4 170 184 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 0.0054466 26.729 By MS/MS 1 0.37741 0.45783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37741 0.45783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1990300 1514600 475680 0 0 0 0 0 0 1990300 1514600 475680 0 0 0 0 0 0 0 0 0 28914 3487 30407 151603 152486 152486 1 RPPEIQHFR TMSKPGNGQPPVPEKRPPEIQHFRMSDDVH PPVPEKRPPEIQHFRMSDDVHSLGKVTSDL K R P F R M 0 2 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 0 0 0 0 0 9 1 1178.6309 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7 A0A0G2JIS2 201 209 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 3 0.0071566 47.198 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1294800 0 1294800 0 0 0 0 0 0 1294800 0 1294800 0 0 0 0 0 0 0 0 0 28915 277 30408 151604 152487 152487 1 RPPEVFEQEIR MALIRVVQSMTQLVRRPPEVFEQEIRQHFS QLVRRPPEVFEQEIRQHFSTGGWRLVNRIE R R P I R Q 0 2 0 0 0 1 3 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 11 1 1398.7256 Q9C0C9;K7ES11 Q9C0C9 1118 1128 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2;3 3.227E-05 122.7 By MS/MS By MS/MS 2 2 0.82762 0.86664 5.0161 4 Median 0.82762 0.88506 2.343 2 0 Median 0.82228 0.83037 5.4132 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40381000 21739000 18642000 25697000 14174000 11524000 14683000 7565200 7118200 0 0 0 0 0 0 0 0 0 0 0 0 28916 3904 30409 151605;151606;151607;151608 152488;152489;152490;152491;152492;152493;152494 152489 7 RPPGDIMFLLVQR LRNYFLEEDNYKNIKRPPGDIMFLLVQRFG IKRPPGDIMFLLVQRFGELMRKLWNPRNFK K R P Q R F 0 2 0 1 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 1 0 0 13 1 1540.8548 B9A018;Q53GS9;A0A087X1B2 B9A018 264 276 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 3 0.0030809 34.685 By matching By MS/MS By matching 1 1 1 0.92577 1.0023 11.117 3 Median NaN NaN NaN 0 0 Median 0.92577 0.84079 NaN 1 0 Median 0.92566 1.033 NaN 1 0 Median 1.0757 1.0023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1646800 913700 733100 0 0 0 269020 176560 92465 1279400 701420 577960 98396 35725 62671 0 0 0 0 0 0 28917 654 30410 151609;151610;151611 152495;152496 152495 2 RPPGPTTSPASTSLSSPGQR PSSNPTPSPLDASPRRPPGPTTSPASTSLS TTSPASTSLSSPGQRDDLIASILSEVAPTP R R P Q R D 1 2 0 0 0 1 0 2 0 0 1 0 0 0 5 5 3 0 0 0 0 0 20 1 1980.0025 Q01970 Q01970 919 938 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3 6.8837E-09 73.688 By MS/MS By MS/MS By MS/MS 1 2 3 0.64077 0.58699 7.8579 6 Median NaN NaN NaN 0 0 Median 0.66254 0.63875 NaN 1 0 Median 0.49771 0.55568 2.4003 2 1 Median 0.67321 0.60963 8.3834 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19084000 11458000 7626800 0 0 0 2698100 1378900 1319200 5082400 3372300 1710100 11304000 6706400 4597600 0 0 0 0 0 0 28918 2695 30411 151612;151613;151614;151615;151616;151617 152497;152498;152499;152500;152501;152502 152501 6 RPPINVAIDR LVCITVTEKLPFYFKRPPINVAIDRGLAFE PFYFKRPPINVAIDRGLAFELVYSPAIKDS K R P D R G 1 2 1 1 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 1 0 0 10 1 1149.6618 P78346;Q5VU10;Q5VU11 P78346 139 148 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.00052184 81.972 By matching By matching By MS/MS By matching 1 1 2 1 0.71184 0.64601 12.929 5 Median 0.74977 0.80145 NaN 1 0 Median 0.71184 0.60454 NaN 1 0 Median 0.58865 0.61237 7.5627 2 0 Median 0.78898 0.70647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35666000 20934000 14732000 5605300 3170400 2434900 2856700 1632100 1224500 22757000 13536000 9220300 4447200 2594600 1852600 0 0 0 0 0 0 28919 2641 30412 151618;151619;151620;151621;151622 152503;152504 152503 2 RPPPHILDQVK LLSQLTSLDPQGPPRRPPPHILDQVKSLNQ GPPRRPPPHILDQVKSLNQSLRLGHLLCRS R R P V K S 0 1 0 1 0 1 0 0 1 1 1 1 0 0 3 0 0 0 0 1 0 0 11 1 1298.7459 Q8N201 Q8N201 844 854 INTS1 Integrator complex subunit 1 yes yes 3 0.00062899 52.391 By MS/MS 1 0.46817 0.56013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46817 0.56013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3891900 2653000 1238900 0 0 0 0 0 0 3891900 2653000 1238900 0 0 0 0 0 0 0 0 0 28920 3360 30413 151623 152505 152505 1 RPPSAFFLFCSEHRPK KGDKKGKKKDPNAPKRPPSAFFLFCSEHRP PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK K R P P K I 1 2 0 0 1 0 1 0 1 0 1 1 0 3 3 2 0 0 0 0 0 0 16 2 1974.9887 P26583;D6R9A6 P26583 97 112 HMGB2 High mobility group protein B2 yes no 4 0.027763 17.078 By MS/MS By matching 1 1 0.94628 0.84795 27.565 2 Median NaN NaN NaN 0 0 Median 1.1126 1.0304 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80479 0.69778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2508800 1218900 1289800 0 0 0 1909000 903890 1005100 0 0 0 599730 315030 284700 0 0 0 0 0 0 28921 2146 30414 151624;151625 152506 152506 1 RPPSAFFLFCSEYRPK KGETKKKFKDPNAPKRPPSAFFLFCSEYRP PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK K R P P K I 1 2 0 0 1 0 1 0 0 0 1 1 0 3 3 2 0 0 1 0 0 0 16 2 2000.9931 P09429;Q5T7C4 P09429 97 112 HMGB1 High mobility group protein B1 yes no 3 0.069788 9.9222 By matching By MS/MS 1 2 0.61871 0.64032 12.774 3 Median 0.53643 0.56222 NaN 1 0 Median 0.65405 0.68175 8.8669 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088200 2706600 1381600 3174900 2181400 993440 913360 525200 388160 0 0 0 0 0 0 0 0 0 0 0 0 28922 1915 30415 151626;151627;151628 152507 152507 1 RPQDTQYYSPFSSFPR SSIMDELFQDRFFLRRPQDTQYYSPFSSFP PQDTQYYSPFSSFPRGSLFFNPKSRFARNV R R P P R G 0 2 0 1 0 2 0 0 0 0 0 0 0 2 3 3 1 0 2 0 0 0 16 1 1974.9224 CON__P17697 CON__P17697 193 208 yes yes 3 0.00011049 58.159 By MS/MS 1 0.059822 0.063852 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.059822 0.063852 NaN 1 1 Median NaN NaN NaN 0 0 Median 3748600 3499400 249140 0 0 0 0 0 0 0 0 0 0 0 0 3748600 3499400 249140 0 0 0 + 28923 759 30416 151629 152508 152508 1 RPQGESYDQAIR IGKLIICNVTGIAHRRPQGESYDQAIRNDE AHRRPQGESYDQAIRNDETGLWQCPFCQQD R R P I R N 1 2 0 1 0 2 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 0 12 1 1418.6902 Q7KZ85 Q7KZ85 1178 1189 SUPT6H Transcription elongation factor SPT6 yes yes 3 4.8129E-05 85.554 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.98804 0.99157 20.235 5 Median NaN NaN NaN 0 0 Median 0.82479 0.83291 NaN 1 0 Median 1.0504 1.3269 NaN 1 0 Median 1.095 0.99157 NaN 1 1 Median 0.98804 1.0688 NaN 1 0 Median 0.91832 0.806 NaN 1 0 Median 8276800 4250000 4026800 0 0 0 1872500 883650 988830 2599400 1496300 1103100 681270 274120 407150 1865900 1040500 825360 1257700 555370 702360 28924 3213 30417 151630;151631;151632;151633;151634 152509;152510;152511;152512;152513;152514 152511 6 RPQHLPGHPGWYR ACLQKLKGTTELLPKRPQHLPGHPGWYRKL PKRPQHLPGHPGWYRKLCPRLDDPAWTPGP K R P Y R K 0 2 0 0 0 1 0 2 2 0 1 0 0 0 3 0 0 1 1 0 0 0 13 1 1599.8171 P54098;H0YD36;A0A1B0GTU7;A0A1B0GW33;A0A590UK63;H0YCV2 P54098 562 574 POLG DNA polymerase subunit gamma-1 yes no 4 0.00064034 47.062 By MS/MS By MS/MS 1 1 0.91146 0.99456 6.3754 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7817 0.95072 NaN 1 0 Median 1.0627 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2324400 1176500 1147900 0 0 0 0 0 0 940330 523190 417130 1384100 653320 730750 0 0 0 0 0 0 28925 2479 30418 151635;151636 152515;152516 152516 1 RPQPYPYPSK CMIFVADCLCPSKRRRPQPYPYPSKKLLSE PSKRRRPQPYPYPSKKLLSESAQPLKKVEE R R P S K K 0 1 0 0 0 1 0 0 0 0 0 1 0 0 4 1 0 0 2 0 0 0 10 1 1231.635 Q9H3N1 Q9H3N1 213 222 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 2;3 0.046725 33.263 By MS/MS 2 0.83018 0.81959 6.3367 2 Median 0.83018 0.81959 6.3367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2180200 1282400 897780 2180200 1282400 897780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28926 3956 30419 151637;151638 152517;152518 152518 2 RPQQPNPPSAPLVPGLLDQSNPLSTPMPK KPGRKRGGRTRKGPKRPQQPNPPSAPLVPG GLLDQSNPLSTPMPKKRGRKSKAELLLLKL K R P P K K 1 1 2 1 0 3 0 1 0 0 4 1 1 0 9 3 1 0 0 1 0 0 29 1 3075.6175 Q8WUA4;A0A087WZD8 Q8WUA4 113 141 GTF3C2 General transcription factor 3C polypeptide 2 yes no 3 8.7829E-06 36.533 By MS/MS 1 0.21634 0.24539 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21634 0.24539 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7833000 6910700 922300 0 0 0 0 0 0 7833000 6910700 922300 0 0 0 0 0 0 0 0 0 28927 3487 30420 151639 152519;152520 152520 2 RPQTDQAVEFFIR KARLLYEANLPENFRRPQTDQAVEFFIRDK FRRPQTDQAVEFFIRDKYEKKKYYDKNAIA R R P I R D 1 2 0 1 0 2 1 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 13 1 1605.8263 Q8IYB5;A0A087X1X9 Q8IYB5 108 120 SMAP1 Stromal membrane-associated protein 1 yes no 3 0.00038075 53.869 By MS/MS By matching 2 1 1.4739 1.3561 47.626 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0725 1.1284 65.66 2 1 Median 1.4739 1.3561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12780000 5176200 7603600 0 0 0 0 0 0 11993000 4936900 7055700 787280 239310 547970 0 0 0 0 0 0 28928 3341 30421 151640;151641;151642 152521;152522;152523 152523 3 RPQVTLLDPNEK LLGLAVGSYLVRRSRRPQVTLLDPNEKYLL RSRRPQVTLLDPNEKYLLRLLDKTTVSHNT R R P E K Y 0 1 1 1 0 1 1 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 1 1408.7674 Q9UHQ9 Q9UHQ9 35 46 CYB5R1 NADH-cytochrome b5 reductase 1 yes yes 2;3 0.00035075 63.076 By MS/MS By MS/MS By MS/MS 2 2 2 0.76817 0.69656 16.442 5 Median 0.6008 0.59689 12.111 2 0 Median 0.78893 0.71347 3.3927 2 0 Median NaN NaN NaN 0 0 Median 0.91035 0.85911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13126000 7298300 5827900 5957500 3380800 2576700 5537600 3007900 2529800 0 0 0 1631000 909600 721390 0 0 0 0 0 0 28929 4280 30422 151643;151644;151645;151646;151647;151648 152524;152525;152526;152527;152528;152529 152525 6 RPQYRPQYR PATDRQFSGARNQLRRPQYRPQYRQRRFPP ARNQLRRPQYRPQYRQRRFPPYHVGQTFDR R R P Y R Q 0 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 9 2 1262.6632 P16989 P16989 225 233 YBX3 Y-box-binding protein 3 yes yes 3 0.015886 31.422 By matching By MS/MS By MS/MS 1 1 2 0.85678 0.89845 16.244 4 Median 0.62376 0.78674 NaN 1 0 Median 0.82244 0.85473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99621 1.0408 13.744 2 0 Median 3265100 1793400 1471700 766780 443160 323620 1259900 755620 504310 0 0 0 0 0 0 0 0 0 1238400 594620 643760 28930 2033 30423 151649;151650;151651;151652 152530;152531;152532 152532 3 RPQYSNPPVQGEVMEGADNQGAGEQGR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME VMEGADNQGAGEQGRPVRQNMYRGYRPRFR R R P G R P 2 2 2 1 0 4 3 5 0 0 0 0 1 0 3 1 0 0 1 2 0 0 27 1 2870.3002 P67809;H0Y449;C9J5V9 P67809 205 231 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 8.4536E-50 157.73 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.60188 0.55699 14.668 4 Median 0.45443 0.45891 NaN 1 0 Median 0.60001 0.5411 NaN 1 0 Median 0.60376 0.65371 NaN 1 0 Median 0.61466 0.57334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45541000 27825000 17716000 7533600 4770200 2763300 6653700 3782100 2871600 13996000 8554100 5441900 17357000 10718000 6639100 0 0 0 0 0 0 28931 2627 30424 151653;151654;151655;151656 152533;152534;152535;152536;152537;152538;152539 152539 7 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME GADNQGAGEQGRPVRQNMYRGYRPRFRRGP R R P V R Q 2 3 2 1 0 4 3 5 0 0 0 0 1 0 4 1 0 0 1 3 0 0 30 2 3222.5225 P67809;H0Y449;C9J5V9 P67809 205 234 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3;4 1.4115E-147 213.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 5 5 3 0.53206 0.64058 58.872 25 Median 0.53102 0.65857 7.69 4 1 Median 0.5172 0.5626 5.4575 4 0 Median 0.54288 0.65162 140.46 4 0 Median 0.51393 0.62982 33.393 5 2 Median 0.64879 0.80505 5.9106 5 1 Median 0.4792 0.5044 5.4417 3 1 Median 594980000 423680000 171300000 100400000 71771000 28633000 48505000 29820000 18686000 85408000 69370000 16039000 217050000 161630000 55419000 130820000 82448000 48369000 12791000 8635700 4155100 28932 2627 30425;30426 151657;151658;151659;151660;151661;151662;151663;151664;151665;151666;151667;151668;151669;151670;151671;151672;151673;151674;151675;151676;151677;151678;151679;151680;151681 152540;152541;152542;152543;152544;152545;152546;152547;152548;152549;152550;152551;152552;152553;152554;152555;152556;152557;152558;152559;152560;152561;152562;152563;152564;152565;152566 152563 1293 27 RPSANCDPFSVTEALIR PRTVGQEKKGYFEDRRPSANCDPFSVTEAL SANCDPFSVTEALIRTCLLNETGDEPFQYK R R P I R T 2 2 1 1 1 0 1 0 0 1 1 0 0 1 2 2 1 0 0 1 0 0 17 1 1931.9523 A0A2R8YDT1;P15104 A0A2R8YDT1 475 491 GLUL Glutamine synthetase yes no 3 0.066234 6.1222 By MS/MS 1 0.67141 0.72281 NaN 1 Median 0.67141 0.72281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8430200 4334900 4095300 8430200 4334900 4095300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28933 398 30427 151682 152567 152567 1 RPSAPVDFSK EKDDDIEEGDLPEHKRPSAPVDFSKIDPSK LPEHKRPSAPVDFSKIDPSKPESILKMTKK K R P S K I 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 2 0 0 0 1 0 0 10 1 1102.5771 Q14696 Q14696 86 95 MESDC2 LDLR chaperone MESD yes yes 2 0.00052253 123.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.85358 0.84301 7.7055 6 Median 0.74502 0.77949 NaN 1 0 Median 0.90729 0.84808 NaN 1 0 Median 0.78545 0.81978 3.103 2 2 Median 1.0925 0.96711 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99376 0.88851 NaN 1 0 Median 39191000 21330000 17861000 7856100 4328100 3528000 1807900 911240 896630 19752000 11458000 8294300 8881400 4188700 4692600 0 0 0 893290 443710 449580 28934 2895 30428 151683;151684;151685;151686;151687;151688 152568;152569;152570;152571;152572;152573;152574 152573 7 RPSENLGQVLFGER YEYTAFDFCQASEGKRPSENLGQVLFGERI KRPSENLGQVLFGERIEPSPYKFTFNKKET K R P E R I 0 2 1 0 0 1 2 2 0 0 2 0 0 1 1 1 0 0 0 1 0 0 14 1 1600.8322 Q99805 Q99805 91 104 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 3 7.069E-05 73.722 By MS/MS By MS/MS 3 3 0.74335 0.75849 16.318 6 Median 0.70046 0.75377 8.1803 3 3 Median 0.9225 0.86462 17.052 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99009000 54851000 44158000 55763000 31450000 24312000 43246000 23401000 19846000 0 0 0 0 0 0 0 0 0 0 0 0 28935 3770 30429 151689;151690;151691;151692;151693;151694 152575;152576;152577;152578;152579 152576 5 RPSPDEPMTNLELK QEHIIQAPKPVEAIKRPSPDEPMTNLELKI KRPSPDEPMTNLELKISASLKQALDKLKLS K R P L K I 0 1 1 1 0 0 2 0 0 0 2 1 1 0 3 1 1 0 0 0 0 0 14 1 1625.8083 Q9UHD1;E9PPQ5 Q9UHD1 108 121 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2;3 4.7808E-13 140.31 By MS/MS By MS/MS By matching 4 5 1 0.58886 0.55726 24.177 10 Median 0.67446 0.6925 29.696 4 0 Median 0.57477 0.54871 4.5471 5 2 Median NaN NaN NaN 0 0 Median 0.5537 0.48511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85268000 50890000 34378000 49443000 28361000 21083000 34205000 21588000 12616000 0 0 0 1620100 941310 678830 0 0 0 0 0 0 28936 4275 30430 151695;151696;151697;151698;151699;151700;151701;151702;151703;151704 152580;152581;152582;152583;152584;152585;152586;152587;152588;152589;152590 152586 11 RPSRPINITSLVR LPGYLPPTKNGVEPKRPSRPINITSLVRLS PKRPSRPINITSLVRLSTTVPNTIVVSWTA K R P V R L 0 3 1 0 0 0 0 0 0 2 1 0 0 0 2 2 1 0 0 1 0 0 13 2 1507.8947 O75925 O75925 245 257 PIAS1 E3 SUMO-protein ligase PIAS1 yes yes 3 0.00045666 54.524 By MS/MS 1 0.55321 0.60995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55321 0.60995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7293700 4275700 3018000 0 0 0 0 0 0 7293700 4275700 3018000 0 0 0 0 0 0 0 0 0 28937 1706 30431 151705 152591 152591 1 RPSSLQSLFGLPEAAGAR SAPPPSNSSSSSAPRRPSSLQSLFGLPEAA SLQSLFGLPEAAGARDSRDNPLRKKKAANL R R P A R D 3 2 0 0 0 1 1 2 0 0 3 0 0 1 2 3 0 0 0 0 0 0 18 1 1855.9904 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 1407 1424 no no 2;3 2.43E-05 47.754 By MS/MS By matching 2 1 0.77071 0.92915 31.598 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57983 0.73246 40.246 2 0 Median 0.94909 0.92915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13057000 8243300 4813300 0 0 0 0 0 0 12956000 8187500 4768700 100340 55829 44513 0 0 0 0 0 0 28938 388 30432 151706;151707;151708 152592;152593;152594 152593 3 RPSTFGIPR EDFYVEGLPEGVPFRRPSTFGIPRLEKILR EGVPFRRPSTFGIPRLEKILRNKAKIKFII R R P P R L 0 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 1 0 0 0 0 0 9 1 1029.572 P78347;A0A494C1K3 P78347 782 790 GTF2I General transcription factor II-I yes no 2 0.00069455 121.09 By MS/MS By MS/MS 1 1 0.62126 0.65142 0.71007 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53831 0.65469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71699 0.64815 NaN 1 1 Median 25265000 16305000 8960100 0 0 0 0 0 0 23213000 15260000 7952400 0 0 0 0 0 0 2052000 1044400 1007700 28939 2642 30433 151709;151710 152595;152596;152597;152598 152596 4 RPSTSQTVSTPAPVPVIESTEAIEAK HASSLDDVSLASTPKRPSTSQTVSTPAPVP APVPVIESTEAIEAKAALKQLQEIFENYKK K R P A K A 3 1 0 0 0 1 3 0 0 2 0 1 0 0 4 4 4 0 0 3 0 0 26 1 2694.4076 P12270 P12270 644 669 TPR Nucleoprotein TPR yes yes 3 1.9076E-31 102.21 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 1 1 0.48552 0.54643 16.025 8 Median 0.52039 0.53396 6.9472 2 0 Median 0.68253 0.65246 NaN 1 0 Median 0.46981 0.53237 5.4825 3 0 Median 0.7874 0.76014 NaN 1 0 Median 0.39735 0.45094 NaN 1 0 Median NaN NaN NaN 0 0 Median 148770000 96014000 52761000 47683000 30690000 16993000 2269300 1099600 1169600 94185000 61414000 32770000 2325800 1217400 1108400 2312200 1592400 719820 0 0 0 28940 1978 30434 151711;151712;151713;151714;151715;151716;151717;151718 152599;152600;152601;152602;152603;152604;152605;152606;152607;152608;152609;152610;152611;152612;152613 152609 15 RPSTYGIPR EDLYVEGLPEGIPFRRPSTYGIPRLERILL EGIPFRRPSTYGIPRLERILLAKERIRFVI R R P P R L 0 2 0 0 0 0 0 1 0 1 0 0 0 0 2 1 1 0 1 0 0 0 9 1 1045.5669 P78347;A0A494C1K3;A0A494C0Q7 P78347 410 418 GTF2I General transcription factor II-I yes no 2 0.0025306 77.732 By matching By matching By MS/MS By matching By matching By matching 2 3 2 1 4 5 0.9241 0.94863 23.203 17 Median 1.0352 1.0696 13.639 2 0 Median 0.95881 0.94863 18.533 3 0 Median 0.5728 0.6673 18.977 2 0 Median 0.82368 0.80638 NaN 1 0 Median 0.83248 0.90577 5.8338 4 0 Median 1.4129 1.2216 25.22 5 0 Median 104200000 51324000 52878000 2766400 1085200 1681200 4908800 2774000 2134800 11595000 7816400 3779100 772600 418590 354010 58409000 28146000 30263000 25750000 11084000 14666000 28941 2642 30435 151719;151720;151721;151722;151723;151724;151725;151726;151727;151728;151729;151730;151731;151732;151733;151734;151735 152614 152614 1 RPSVYLPTR FSRFHADSVCKASNRRPSVYLPTREYPSEQ CKASNRRPSVYLPTREYPSEQIIVTEKTNI R R P T R E 0 2 0 0 0 0 0 0 0 0 1 0 0 0 2 1 1 0 1 1 0 0 9 1 1087.6138 Q9BW61 Q9BW61 31 39 DDA1 DET1- and DDB1-associated protein 1 yes yes 2 0.0010682 100.25 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.7605 0.7441 9.0989 4 Median 0.76658 0.76484 NaN 1 0 Median 0.75447 0.64327 NaN 1 0 Median 0.66661 0.72393 NaN 1 0 Median 0.96321 0.79182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29552000 16286000 13266000 11714000 6479000 5234900 11354000 5991400 5363100 6070800 3590700 2480000 412760 225190 187560 0 0 0 0 0 0 28942 3864 30436 151736;151737;151738;151739 152615;152616;152617;152618;152619;152620 152615 6 RPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYR ______________________________ VGYNPYSHLAYNNYRLGGNPGTNSRVTASS K R P Y R L 4 2 3 0 0 1 0 2 1 0 1 0 1 1 9 3 3 0 5 1 0 0 37 1 4078.9425 Q969G3;A0A2R8Y855;J3QKX6;J3QL66;A0A2R8YDQ4 Q969G3 4 40 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 4 4.3163E-16 51.878 By MS/MS By matching By MS/MS 2 1 1 0.22369 0.24108 13.775 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19599 0.21195 11.286 2 0 Median 0.29133 0.26804 NaN 1 0 Median 0.23601 0.25318 NaN 1 1 Median NaN NaN NaN 0 0 Median 39219000 33011000 6208000 0 0 0 0 0 0 34370000 28889000 5481600 1152700 941340 211390 3695900 3181000 514930 0 0 0 28943 389 30437 151740;151741;151742;151743 152621;152622;152623 152622 3 RPSYSSSLFGYSPAAATAAAAAGAPALLSPPK AELQAAIDGNRREGRRPSYSSSLFGYSPAA AAAAAGAPALLSPPKIRFPILGLGSSSGTN R R P P K I 10 1 0 0 0 0 0 2 0 0 3 1 0 1 5 6 1 0 2 0 0 0 32 1 3047.5716 Q8IVW6;H3BQ92 Q8IVW6 328 359 ARID3B AT-rich interactive domain-containing protein 3B yes no 3 0.037806 9.9351 By MS/MS By matching 1 1 0.57626 0.56874 2.9935 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54681 0.58091 NaN 1 0 Median 0.60729 0.55683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2665300 1864600 800760 0 0 0 0 0 0 2495300 1781500 713810 170030 83081 86949 0 0 0 0 0 0 28944 3320 30438 151744;151745 152624;152625 152624 2 RPTAAELLR FRKMISLCLQKDPEKRPTAAELLRHKFFQK QKDPEKRPTAAELLRHKFFQKAKNKEFLQE K R P L R H 2 2 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1025.5982 O95747;C9JIG9 O95747 279 287 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 0.027983 48.283 By MS/MS 1 1.145 1.0399 NaN 1 Median NaN NaN NaN 0 0 Median 1.145 1.0399 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4580600 1742000 2838600 0 0 0 4580600 1742000 2838600 0 0 0 0 0 0 0 0 0 0 0 0 28945 1789 30439 151746 152626 152626 1 RPTDYFAEMAK LAVLPRLHQLKVPTKRPTDYFAEMAKSDLQ VPTKRPTDYFAEMAKSDLQMQKIRQKLQTK K R P A K S 2 1 0 1 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 11 1 1327.6231 H7C2Q8;Q99848 H7C2Q8 187 197 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2;3 7.326E-06 128.27 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 8 1 0.98854 1.0642 27.141 12 Median 2.2298 2.3887 NaN 1 1 Median 1.2958 1.2124 NaN 1 0 Median 1.0639 1.2104 20.564 2 1 Median NaN NaN NaN 0 0 Median 0.95706 1.0086 13.708 7 3 Median 0.99078 0.89652 NaN 1 0 Median 145250000 75408000 69837000 4073600 1331500 2742200 69329 29111 40218 27980000 14549000 13431000 0 0 0 111710000 58841000 52868000 1413800 658030 755800 28946 1262 30440;30441 151747;151748;151749;151750;151751;151752;151753;151754;151755;151756;151757;151758;151759 152627;152628;152629;152630;152631;152632;152633;152634;152635;152636;152637;152638;152639 152633 421 13 RPTELLSNPQFIVDGATR DLGPNSSKTYGIKWKRPTELLSNPQFIVDG ELLSNPQFIVDGATRTDICQGALGDCWLLA K R P T R T 1 2 1 1 0 1 1 1 0 1 2 0 0 1 2 1 2 0 0 1 0 0 18 1 2013.0643 P07384;E9PRM1;E9PLX0;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3 P07384 87 104 CAPN1 Calpain-1 catalytic subunit yes no 2;3 5.2634E-09 96.544 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 0.71552 0.73363 15.113 5 Median 0.70648 0.72435 1.7997 2 0 Median 0.98751 0.97702 NaN 1 0 Median 0.60748 0.6779 NaN 1 0 Median 0.9726 0.86182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54958000 30617000 24341000 31250000 17872000 13378000 3371400 1568100 1803300 19221000 10659000 8561400 1116100 517760 598390 0 0 0 0 0 0 28947 1886 30442 151760;151761;151762;151763;151764 152640;152641;152642;152643;152644 152640 5 RPTGDFGFSLR VPLPPPTLRELELQRRPTGDFGFSLRRTTM ELQRRPTGDFGFSLRRTTMLDRGPEGQACR R R P L R R 0 2 0 1 0 0 0 2 0 0 1 0 0 2 1 1 1 0 0 0 0 0 11 1 1251.636 Q92614;A0A0D9SFK2 Q92614 226 236 MYO18A Unconventional myosin-XVIIIa yes no 3 0.0438 21.301 By MS/MS 1 1.1252 1.4214 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1252 1.4214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2223500 1098800 1124700 0 0 0 0 0 0 2223500 1098800 1124700 0 0 0 0 0 0 0 0 0 28948 267 30443 151765 152645 152645 0 RPTLGVQLDDKR ESDSDAEEEQTTKRRRPTLGVQLDDKRKEM KRRRPTLGVQLDDKRKEMLKRHPLSVMLDL R R P K R K 0 2 0 2 0 1 0 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 12 2 1396.7787 Q13769;H7C072 Q13769 326 337 THOC5 THO complex subunit 5 homolog yes no 3 0.00044991 53.754 By MS/MS 1 0.77659 0.87122 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77659 0.87122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40906000 21966000 18940000 0 0 0 0 0 0 40906000 21966000 18940000 0 0 0 0 0 0 0 0 0 28949 2837 30444 151766 152646;152647 152646 2 RPTPQDSPIFLPVDDTSFR GLKKSFYGSTLFLCRRPTPQDSPIFLPVDD QDSPIFLPVDDTSFRWVESLKGILADEDSS R R P F R W 0 2 0 3 0 1 0 0 0 1 1 0 0 2 4 2 2 0 0 1 0 0 19 1 2187.096 P49327;A0A0U1RQF0 P49327 1405 1423 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 2.626E-84 242.26 By MS/MS By MS/MS By MS/MS 3 4 1 0.72902 0.7417 21.042 8 Median 0.5631 0.5999 10.58 3 0 Plateau 0.76019 0.75008 1.2277 4 0 Median 0.73026 0.9225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 252310000 154560000 97750000 191620000 121470000 70156000 48461000 26158000 22303000 12226000 6934600 5291400 0 0 0 0 0 0 0 0 0 28950 2377 30445 151767;151768;151769;151770;151771;151772;151773;151774 152648;152649;152650;152651;152652;152653;152654;152655;152656;152657;152658;152659;152660;152661;152662;152663 152653 16 RPTVSSDLENIDTGVNSK ______________________________ VSSDLENIDTGVNSKVKSHVTIRRTVLEEI R R P S K V 0 1 2 2 0 0 1 1 0 1 1 1 0 0 1 3 2 0 0 2 0 0 18 1 1930.9596 O95067;H1UBN3 O95067 6 23 CCNB2;CCNB2V G2/mitotic-specific cyclin-B2 yes no 3 1.5064E-06 60.564 By MS/MS By MS/MS 1 1 0.98639 0.97183 7.8293 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90676 0.91949 NaN 1 0 Median 1.073 1.0272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18619000 9859100 8760300 0 0 0 0 0 0 10487000 5773900 4713200 8132300 4085200 4047100 0 0 0 0 0 0 28951 1743 30446 151775;151776 152664;152665 152664 1 RPVGASFSFGGK HSIVLPLKKPPKWIRRPVGASFSFGGKLVT WIRRPVGASFSFGGKLVTFENVRMPSHQGA R R P G K L 1 1 0 0 0 0 0 3 0 0 0 1 0 2 1 2 0 0 0 1 0 0 12 1 1208.6302 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3 D6REX3 392 403 SEC31A Protein transport protein Sec31A yes no 2;3 1.7673E-05 128.81 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.98296 1.023 8.3859 6 Median 0.93769 0.97665 5.9331 2 0 Median 1.0596 1.0024 13.752 2 0 Median 0.98706 1.1178 NaN 1 0 Median 1.0693 1.0276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33172000 15888000 17284000 22355000 10886000 11469000 5762600 2867900 2894700 4438800 1822600 2616200 615840 311910 303930 0 0 0 0 0 0 28952 823 30447 151777;151778;151779;151780;151781;151782 152666;152667;152668;152669;152670;152671 152670 6 RPVHGESDTEQLQDDDIETTK QTYELMRCLEDLTSRRPVHGESDTEQLQDD SDTEQLQDDDIETTKVEMLRLSLARNLARA R R P T K V 0 1 0 4 0 2 3 1 1 1 1 1 0 0 1 1 3 0 0 1 0 0 21 1 2412.1041 Q9BW27;J3KT10;J3QL54;F5H0W7;J3KS87 Q9BW27 611 631 NUP85 Nuclear pore complex protein Nup85 yes no 3;4 3.2947E-18 106.86 By matching By MS/MS By MS/MS 1 2 2 1.0156 0.93124 8.1214 5 Median NaN NaN NaN 0 0 Median 1.1242 1.0277 NaN 1 0 Median 0.84022 0.89297 4.0787 2 0 Median 1.0805 0.99067 8.7498 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50782000 24699000 26083000 0 0 0 5649700 2643300 3006400 28785000 14611000 14174000 16347000 7444700 8902300 0 0 0 0 0 0 28953 3861 30448 151783;151784;151785;151786;151787 152672;152673;152674;152675;152676;152677;152678;152679 152675 8 RPVHLDQAAFR NGRQWKPQLGFNRDRRPVHLDQAAFRTLGH NRDRRPVHLDQAAFRTLGHVMPRGSGTGIY R R P F R T 2 2 0 1 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 11 1 1308.7051 Q9H0D6 Q9H0D6 806 816 XRN2 5-3 exoribonuclease 2 yes yes 3 3.4856E-05 88.441 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 0.98453 1.0534 32.865 9 Median 1.3842 1.5378 NaN 1 0 Median 0.9958 0.97254 11.295 2 0 Median 0.96029 1.1096 NaN 1 0 Median 1.1712 1.1466 41.904 3 0 Median 0.6931 0.7464 10.821 2 1 Median NaN NaN NaN 0 0 Median 29953000 15548000 14405000 2064700 899870 1164900 5849900 2926000 2923900 7585900 3837400 3748500 6687800 3341900 3345900 7765200 4542900 3222300 0 0 0 28954 3924 30449 151788;151789;151790;151791;151792;151793;151794;151795;151796 152680;152681;152682;152683;152684;152685;152686;152687 152686 7 RPVINAGDGVGEHPTQALLDIFTIR HPQPGAVELAAKHCRRPVINAGDGVGEHPT GEHPTQALLDIFTIREELGTVNGMTITMVG R R P I R E 2 2 1 2 0 1 1 3 1 3 2 0 0 1 2 0 2 0 0 2 0 0 25 1 2688.4347 F8VPD4;P27708;H7C2E4 F8VPD4 1977 2001 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3;4 9.9373E-13 54.259 By MS/MS 3 0.76368 0.77119 13.332 3 Median NaN NaN NaN 0 0 Median 0.76368 0.77119 13.332 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11192000 6005900 5186000 0 0 0 11192000 6005900 5186000 0 0 0 0 0 0 0 0 0 0 0 0 28955 1057 30450 151797;151798;151799 152688;152689;152690;152691;152692 152690 5 RPVLLLHPLGGWTK LMQDTHKQLLERGYRRPVLLLHPLGGWTKD RRPVLLLHPLGGWTKDDDVPLMWRMKQHAA R R P T K D 0 1 0 0 0 0 0 2 1 0 4 1 0 0 2 0 1 1 0 1 0 0 14 1 1585.9457 O43252 O43252 446 459 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 3 0.00061112 42.317 By MS/MS By matching By matching 1 1 1 1.1204 1.0354 25.003 3 Median 0.77066 0.77389 NaN 1 0 Median 1.1204 1.0354 NaN 1 0 Median 1.1966 1.2729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8490800 4427100 4063700 6253000 3433100 2819900 862700 366830 495870 1375100 627130 747960 0 0 0 0 0 0 0 0 0 28956 1561 30451 151800;151801;151802 152693;152694 152694 2 RPVMLTLLR QFTTMVQVNEETGNRRPVMLTLLRVPRLNK EETGNRRPVMLTLLRVPRLNKNSKNSNGQE R R P L R V 0 2 0 0 0 0 0 0 0 0 3 0 1 0 1 0 1 0 0 1 0 0 9 1 1097.6743 Q7Z6Z7 Q7Z6Z7 1676 1684 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00088869 108.74 By MS/MS By MS/MS By matching 2 2 1 0.96203 1.054 11.399 5 Median 0.86425 0.93168 4.8978 2 0 Median 1.165 1.1334 10.261 2 0 Median 0.96203 1.0573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150140000 76307000 73832000 114330000 59993000 54335000 33500000 15128000 18372000 2310800 1186100 1124700 0 0 0 0 0 0 0 0 0 28957 3253 30452 151803;151804;151805;151806;151807 152695;152696;152697;152698;152699;152700 152696 6 RPVPPEVAQQYQDIMQR QERLERKILALRQARRPVPPEVAQQYQDIM VPPEVAQQYQDIMQRSQWQRAQLEQGGVGI R R P Q R S 1 2 0 1 0 4 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 17 1 2054.0367 Q6P1N0;K7EMP1 Q6P1N0 870 886 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 3 5.8942E-06 58.98 By MS/MS 1 0.73625 0.81799 NaN 1 Median 0.73625 0.81799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4614100 2609300 2004900 4614100 2609300 2004900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28958 3153 30453 151808 152701 152701 1 RPVQAWVESLR EPVLRKVELPVPTHRRPVQAWVESLRGFEQ PTHRRPVQAWVESLRGFEQERVGLADLHPD R R P L R G 1 2 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 1 0 2 0 0 11 1 1339.7361 K7ES61;Q9BYD3;K7ELQ0;X6RAY8;K7EKI4;K7ELF1 K7ES61 60 70 MRPL4 39S ribosomal protein L4, mitochondrial yes no 2;3 3.2147E-05 123.79 By MS/MS By matching By MS/MS 2 2 2 0.91614 0.96946 12.725 6 Median 0.85948 0.92529 4.3006 2 0 Median 1.2896 1.187 6.38 2 0 Median 0.91614 0.95622 4.2398 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40754000 21390000 19364000 26065000 13731000 12334000 2901400 1328700 1572700 11788000 6330200 5457400 0 0 0 0 0 0 0 0 0 28959 1401 30454 151809;151810;151811;151812;151813;151814 152702;152703;152704;152705;152706;152707;152708;152709 152704 8 RPVSAMFIFSEEK KPAQEGGKGGSEKPKRPVSAMFIFSEEKRR PKRPVSAMFIFSEEKRRQLQEERPELSESE K R P E K R 1 1 0 0 0 0 2 0 0 1 0 1 1 2 1 2 0 0 0 1 0 0 13 1 1539.7755 P17480;E9PKP7 P17480 409 421 UBTF Nucleolar transcription factor 1 yes no 2;3 9.4093E-07 104.79 By MS/MS By MS/MS By matching 3 4 1 0.72338 0.80342 26.096 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69156 0.78643 5.7925 3 0 Median NaN NaN NaN 0 0 Median 0.83795 0.92158 28.928 4 0 Median 0.66459 0.61322 NaN 1 0 Median 37647000 20597000 17050000 0 0 0 0 0 0 7718800 4382400 3336400 0 0 0 29655000 16060000 13595000 272620 154090 118530 28960 2040 30455;30456 151815;151816;151817;151818;151819;151820;151821;151822 152710;152711;152712;152713;152714;152715;152716 152713 811 7 RPVSSIHPPGRPPAVR TWLQSASSHSPTPQRRPVSSIHPPGRPPAV PVSSIHPPGRPPAVRGPTPGPPLIPVPVGA R R P V R G 1 3 0 0 0 0 0 1 1 1 0 0 0 0 5 2 0 0 0 2 0 0 16 2 1721.9802 P50570;K7ENE7 P50570 770 785 DNM2 Dynamin-2 yes no 4 0.006596 37.092 By matching By MS/MS By MS/MS By matching 2 1 1 1 0.40694 0.43323 27.495 5 Median NaN NaN NaN 0 0 Median 0.3851 0.39209 14.112 2 0 Median 0.40694 0.49366 NaN 1 0 Median 0.38424 0.37778 NaN 1 1 Median 0.61367 0.70945 NaN 1 0 Median NaN NaN NaN 0 0 Median 8972200 6084700 2887400 0 0 0 2002600 1315800 686810 4608800 3185800 1423000 1590200 1140700 449480 770620 442440 328180 0 0 0 28961 2417 30457 151823;151824;151825;151826;151827 152717;152718;152719 152719 3 RPVVQVVDER VRVRPPTPRELDSQRRPVVQVVDERVLVFN LDSQRRPVVQVVDERVLVFNPEEPDGGFPG R R P E R V 0 2 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 4 0 0 10 1 1195.6673 A0A494BYR6;Q86Y91 A0A494BYR6 36 45 KIF18B Kinesin-like protein KIF18B yes no 2;3 0.015091 39.785 By MS/MS By matching 2 1 0.9184 0.9293 22.349 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68669 0.79346 NaN 1 0 Median 1.2283 1.0884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2582500 933080 1649400 0 0 0 0 0 0 2132200 783890 1348300 450270 149190 301090 0 0 0 0 0 0 28962 450 30458 151828;151829;151830 152720;152721 152721 2 RPWILTSLHNGVIQLWDYR ETKSARVKGLSFHPKRPWILTSLHNGVIQL LTSLHNGVIQLWDYRMCTLIDKFDEHDGPV K R P Y R M 0 2 1 1 0 1 0 1 1 2 3 0 0 0 1 1 1 2 1 1 0 0 19 1 2366.2648 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1;A0A3B3IS23;A0A3B3ITX2;A0A3B3IU84 P53621 21 39 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 0.079313 1.427 By MS/MS 1 1.2514 1.3383 NaN 1 Median 1.2514 1.3383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3752400 1552800 2199600 3752400 1552800 2199600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28963 2473 30459 151831 152722 152722 1 RPWLSATPSSGASAAR AIKKPPSGFKGTIPKRPWLSATPSSGASAA PWLSATPSSGASAARQAGPAPAAATAASKK K R P A R Q 4 2 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 1 0 0 0 0 16 1 1613.8274 Q9BTC0 Q9BTC0 597 612 DIDO1 Death-inducer obliterator 1 yes yes 2;3 1.4557E-10 104.94 By MS/MS By matching 4 1 0.58415 0.71045 23.629 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57483 0.67977 8.8025 4 0 Median 1.15 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43709000 27523000 16186000 0 0 0 0 0 0 42476000 26937000 15539000 1232500 585630 646900 0 0 0 0 0 0 28964 3824 30460 151832;151833;151834;151835;151836 152723;152724;152725;152726;152727 152724 5 RPYAPINANAIK RRMCRDLLQPRRAARRPYAPINANAIKAEC AARRPYAPINANAIKAECSIRLPKAAKTPL R R P I K A 3 1 2 0 0 0 0 0 0 2 0 1 0 0 2 0 0 0 1 0 0 0 12 1 1326.7408 O94776 O94776 481 492 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 2.0053E-07 120.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 5 4 0.77193 0.79807 19.407 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72573 0.77215 12.057 3 2 Median 0.77193 0.70778 18.832 5 3 Median 0.84793 0.93258 13.092 5 3 Median 0.80195 0.71448 21.472 4 3 Median 204710000 124290000 80423000 0 0 0 0 0 0 110430000 72892000 37540000 22957000 13050000 9907000 60527000 32284000 28243000 10793000 6059400 4733400 28965 1723 30461 151837;151838;151839;151840;151841;151842;151843;151844;151845;151846;151847;151848;151849;151850;151851;151852;151853 152728;152729;152730;152731;152732;152733;152734;152735;152736;152737;152738;152739;152740;152741;152742;152743;152744;152745;152746;152747 152731 20 RPYDLDR QQELRYEQERRPAVRRPYDLDRRDDAYWPE QERRPAVRRPYDLDRRDDAYWPEAKRAALD R R P D R R 0 2 0 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 1 933.46683 Q15424;K7EII0;Q14151 Q15424 712 718 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 2 0.0079947 96.253 By MS/MS By MS/MS By MS/MS By matching 2 1 3 3 0.94202 0.95858 15.72 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0426 1.1896 27.407 2 0 Median 0.98121 0.9606 NaN 1 0 Median 0.82178 0.88898 5.1658 3 1 Median 1.0532 0.92627 6.1691 3 0 Median 20252000 10549000 9702400 0 0 0 0 0 0 2404400 1231900 1172600 2233900 1077500 1156400 13255000 7138400 6117000 2357800 1101400 1256400 28966 2951;2859 30462 151854;151855;151856;151857;151858;151859;151860;151861;151862 152748;152749;152750;152751;152752;152753;152754 152749 7 RPYEPINSIK VSAGSDRKIKFWDLRRPYEPINSIKRFLST FWDLRRPYEPINSIKRFLSTELAWLLPYNG R R P I K R 0 1 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 0 10 1 1215.6612 Q8WUA4;H0Y4Q6;H7C3X9 Q8WUA4 645 654 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.002078 65.305 By matching By MS/MS By MS/MS 1 1 1 0.66184 0.70259 35.418 3 Median NaN NaN NaN 0 0 Median 0.66184 0.62853 NaN 1 0 Median 0.61891 0.70259 NaN 1 0 Median 1.2725 1.2179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7646100 4654000 2992100 0 0 0 1755700 1049700 705950 5036900 3204800 1832000 853530 399450 454090 0 0 0 0 0 0 28967 3487 30463 151863;151864;151865 152755;152756;152757 152755 3 RPYKPIALR IRKLLSSSETKRAARRPYKPIALRQSQALP TKRAARRPYKPIALRQSQALPPRPPPPAPV R R P L R Q 1 2 0 0 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 9 2 1112.6818 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 671 679 MTA1 Metastasis-associated protein MTA1 yes no 2 0.024225 54.549 By matching By MS/MS 1 2 0.66826 0.78174 31.674 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1568 1.1776 NaN 1 0 Median 0.6082 0.70258 15.1 2 0 Median NaN NaN NaN 0 0 Median 6399900 3645100 2754900 0 0 0 0 0 0 0 0 0 463970 174080 289890 5936000 3471000 2465000 0 0 0 28968 888 30464 151866;151867;151868 152758 152758 1 RPYTGNPQYTYNNWSPPVQSNETSNGYFLER KWTWAVEWLGDELERRPYTGNPQYTYNNWS PVQSNETSNGYFLERSHSARMTLAKACELC R R P E R S 0 2 5 0 0 2 2 2 0 0 1 0 0 1 4 3 3 1 4 1 0 0 31 1 3678.6764 Q93008 Q93008 2429 2459 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 0.035524 10.66 By MS/MS 1 0.53608 0.57329 NaN 1 Median 0.53608 0.57329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2871200 1794700 1076600 2871200 1794700 1076600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28969 3573 30465 151869 152759 152759 1 RPYTVILIER IATIVADKCVNPETKRPYTVILIERAMKDI NPETKRPYTVILIERAMKDIHYSVKTNKST K R P E R A 0 2 0 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 1 1 0 0 10 1 1258.7398 Q9Y3A5;A0A087X020 Q9Y3A5 126 135 SBDS Ribosome maturation protein SBDS yes no 2;3 0.00023068 114.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 0.9211 0.84271 16.746 9 Median 0.74106 0.7978 6.9453 2 1 Median 0.7788 0.66141 8.4198 2 1 Median 0.95603 0.99125 5.2638 2 0 Median 0.94113 0.87513 9.5015 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107140000 57249000 49895000 35901000 20452000 15449000 4591600 2444100 2147400 45375000 23348000 22027000 21277000 11005000 10272000 0 0 0 0 0 0 28970 100 30466 151870;151871;151872;151873;151874;151875;151876;151877;151878 152760;152761;152762;152763;152764;152765;152766;152767;152768;152769;152770;152771;152772 152765 13 RQAQQERDELADEIANSSGK MIQLQEELAAAERAKRQAQQERDELADEIA ERDELADEIANSSGKGALALEEKRRLEARI K R Q G K G 3 2 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 20 2 2244.0731 P35579 P35579 1697 1716 MYH9 Myosin-9 yes yes 3;4 1.3706E-19 138.04 By MS/MS By MS/MS 2 2 1.1769 1.2008 8.0126 4 Median 1.1769 1.2008 1.1496 2 0 Median 1.0871 1.2333 13.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69256000 31932000 37324000 55860000 25911000 29949000 13396000 6021200 7374800 0 0 0 0 0 0 0 0 0 0 0 0 28971 2244 30467 151879;151880;151881;151882 152773;152774;152775;152776;152777;152778;152779;152780 152778 8 RQATTIIADNIIFLSDQTK GKIDYGEYMDKNNVRRQATTIIADNIIFLS TIIADNIIFLSDQTKEKE____________ R R Q T K E 2 1 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 19 1 2147.1586 Q04837 Q04837 127 145 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 3 2.6833E-08 66.325 By MS/MS By MS/MS 1 1 1.3139 1.4226 35.064 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0666 1.1102 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6185 1.8229 NaN 1 0 Median NaN NaN NaN 0 0 Median 8345200 3481100 4864100 0 0 0 0 0 0 4812200 2407100 2405100 0 0 0 3533000 1074100 2459000 0 0 0 28972 2713 30468 151883;151884 152781;152782;152783 152782 3 RQAVDVSPLR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R R Q L R R 1 2 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 1 1139.6411 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 136 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00091085 112.71 By MS/MS By MS/MS By matching By matching By MS/MS 2 2 2 1 4 0.9152 0.81785 7.6728 11 Median 0.78605 0.81177 7.8472 2 0 Median 0.89943 0.79279 7.7164 2 0 Median NaN NaN NaN 0 0 Median 1.0098 0.92241 7.551 2 0 Median 0.7599 0.81109 NaN 1 0 Median 0.92644 0.81353 5.1951 4 0 Median 134990000 74042000 60952000 98406000 55186000 43220000 9798300 5038600 4759700 0 0 0 3741000 1746200 1994700 2342900 1304400 1038500 20706000 10767000 9939100 28973 1425 30469 151885;151886;151887;151888;151889;151890;151891;151892;151893;151894;151895 152784;152785;152786 152784 3 RQAVDVSPLRR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA GTVRRQAVDVSPLRRVNQAIWLLCTGAREA R R Q R R V 1 3 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 2 1295.7422 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 136 146 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 3 5.9272E-05 93.561 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 2 0.98207 1.0235 111.17 10 Median 0.16535 0.17536 243.3 2 0 Median 0.98207 1.0872 11.82 2 0 Median 1.115 1.1019 NaN 1 0 Median 1.1932 1.0237 NaN 1 0 Median 0.94981 1.1095 11.426 2 0 Median 0.99959 0.94944 13.987 2 0 Median 44789000 26914000 17875000 10318000 9807200 510580 15963000 8155600 7807700 7558800 3489100 4069700 1423600 677840 745750 8963500 4560100 4403400 562220 224500 337730 28974 1425 30470 151896;151897;151898;151899;151900;151901;151902;151903;151904;151905 152787;152788;152789;152790;152791;152792;152793;152794 152789 8 RQAVTNPNNTFYATK AFTADGERLVGMPAKRQAVTNPNNTFYATK RQAVTNPNNTFYATKRLIGRRYDDPEVQKD K R Q T K R 2 1 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 15 1 1723.8642 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 107 121 HSPA9 Stress-70 protein, mitochondrial yes no 3 0.001326 34.954 By MS/MS By MS/MS 1 2 1.2766 1.1325 8.6012 3 Median 0.98553 0.99472 NaN 1 0 Median 1.2928 1.1513 2.3332 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6447900 2948000 3499900 3111400 1409700 1701700 3336500 1538200 1798200 0 0 0 0 0 0 0 0 0 0 0 0 28975 2277 30471 151906;151907;151908 152795;152796 152795 1 RQDDIKDESSEFSSHSNK IHQLYKQRASRLVQRRQDDIKDESSEFSSH DIKDESSEFSSHSNKALMAPNLDSFGRDRA R R Q N K A 0 1 1 3 0 1 2 0 1 1 0 2 0 1 0 5 0 0 0 0 0 0 18 2 2107.9407 Q9Y5B6 Q9Y5B6 487 504 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 4 0.064276 8.9317 By MS/MS 2 0.93508 1.1141 32.57 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93508 1.1141 32.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2498300 1165700 1332600 0 0 0 0 0 0 2498300 1165700 1332600 0 0 0 0 0 0 0 0 0 28976 4455 30472 151909;151910 152797;152798;152799;152800 152797 4 RQDLLNVLAR RVCCEGMLIQLRFLKRQDLLNVLARMMRPV LRFLKRQDLLNVLARMMRPVSDQVQIKVTM K R Q A R M 1 2 1 1 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 1 1196.699 Q96A33 Q96A33 227 236 CCDC47 Coiled-coil domain-containing protein 47 yes yes 2 0.00058549 76.228 By MS/MS 1 1.1893 1.1718 NaN 1 Median 1.1893 1.1718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120700 2633300 3487400 6120700 2633300 3487400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28977 3592 30473 151911 152801;152802 152801 2 RQDLLSR SVWELLFYREVSEDRRQDLLSRYRAGTLTV YREVSEDRRQDLLSRYRAGTLTVEELGATL R R Q S R Y 0 2 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 1 886.49846 P58107;A0A075B730 P58107 2468 2474 EPPK1 Epiplakin yes no 2 0.039633 53.968 By matching By MS/MS By MS/MS 2 3 2 1.246 1.1645 20.044 7 Median 1.1636 1.1607 0.36613 2 0 Median 1.5501 1.5653 23.685 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2695 1.1308 4.7236 2 0 Median 13956000 6063400 7893000 5702700 2479300 3223400 5704700 2417100 3287600 0 0 0 0 0 0 0 0 0 2549100 1167000 1382100 28978 2520 30474 151912;151913;151914;151915;151916;151917;151918 152803;152804;152805;152806 152804 4 RQEALPLHQETK DDQDKKVETLMVPSKRQEALPLHQETKQES PSKRQEALPLHQETKQESGSGKKKASSKKQ K R Q T K Q 1 1 0 0 0 2 2 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 12 1 1448.7736 Q86UP2 Q86UP2 190 201 KTN1 Kinectin yes yes 3 0.0011311 42.789 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 0.99228 0.95158 25.878 6 Median 1.0521 1.0776 NaN 1 0 Median 0.88024 0.84801 26.849 2 0 Median 0.5492 0.6082 NaN 1 0 Median 1.0667 1.0181 20.112 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3836100 1883700 1952400 676450 288160 388290 1571200 780640 790600 551270 348530 202740 1037100 466340 570760 0 0 0 0 0 0 28979 3280 30475 151919;151920;151921;151922;151923;151924 152807;152808;152809;152810;152811 152811 5 RQEEEAGALEAGEEAR RELQTAQAQLSEWRRRQEEEAGALEAGEEA QEEEAGALEAGEEARRRAAREAEALTQRLA R R Q A R R 4 2 0 0 0 1 6 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 16 1 1743.8024 Q7Z406;A0A0C4DFM8;A1L2Z2 Q7Z406 1396 1411 MYH14 Myosin-14 yes no 3 0.00017756 42.813 By MS/MS By matching 1 1 0.9979 1.037 6.1231 2 Median 0.92862 0.99307 NaN 1 0 Median 1.0724 1.0829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3243500 1482800 1760700 1320400 737390 582960 1923200 745410 1177800 0 0 0 0 0 0 0 0 0 0 0 0 28980 3242 30476 151925;151926 152812 152812 1 RQEFEMK GCFSQQVNTKIFQLKRQEFEMKIEVEAKIQ NTKIFQLKRQEFEMKIEVEAKIQEEGTEVE K R Q M K I 0 1 0 0 0 1 2 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 7 1 966.4593 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 313 319 yes yes 2 0.053124 47.849 By MS/MS 1 0.10111 0.092868 NaN 1 Median NaN NaN NaN 0 0 Median 0.10111 0.092868 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1985900 1674200 311720 0 0 0 1985900 1674200 311720 0 0 0 0 0 0 0 0 0 0 0 0 + 28981 734 30477 151927 152813 152813 1 RQEHDISLDR IVTLSPRMADSEIPRRQEHDISLDRIPRDH SEIPRRQEHDISLDRIPRDHPYIQYNVLWE R R Q D R I 0 2 0 2 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 10 1 1267.6269 Q92797;A0A087WUE9;M0R3C7 Q92797 206 215 SYMPK Symplekin yes no 3 0.0022767 45.077 By MS/MS By MS/MS By MS/MS 2 1 2 0.90515 1.1009 59.091 5 Median 0.40346 0.41367 0 2 0 Median NaN NaN NaN 0 0 Median 0.90515 1.1009 NaN 1 0 Median 1.3392 1.2609 11.149 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7279100 4232500 3046700 3746200 2588900 1157300 0 0 0 2255000 1110000 1145100 1277900 533590 744270 0 0 0 0 0 0 28982 3558 30478 151928;151929;151930;151931;151932 152814;152815;152816;152817;152818 152816 5 RQEHDISLDRIPR IVTLSPRMADSEIPRRQEHDISLDRIPRDH PRRQEHDISLDRIPRDHPYIQYNVLWEEGK R R Q P R D 0 3 0 2 0 1 1 0 1 2 1 0 0 0 1 1 0 0 0 0 0 0 13 2 1633.8649 Q92797;A0A087WUE9;M0R3C7 Q92797 206 218 SYMPK Symplekin yes no 4 0.00030106 61.11 By matching By MS/MS 1 1 0.81939 0.9 9.4983 2 Median 0.91038 0.96252 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7375 0.84153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6282100 3460900 2821200 2206800 1216100 990670 0 0 0 4075400 2244800 1830500 0 0 0 0 0 0 0 0 0 28983 3558 30479 151933;151934 152819;152820;152821 152820 3 RQEIEQKLEVQAEEER KFKQESTVATERQKRRQEIEQKLEVQAEEE QEIEQKLEVQAEEERKQVENERRELFEERR R R Q E R K 1 2 0 0 0 3 6 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 16 2 2013.0127 Q9H307 Q9H307 170 185 PNN Pinin yes yes 3 3.4707E-07 89.358 By MS/MS By MS/MS 1 1 1.1012 1.1088 1.8175 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96014 1.1232 NaN 1 1 Median 1.2629 1.0947 NaN 1 0 Median 11667000 5369400 6297400 0 0 0 0 0 0 0 0 0 0 0 0 8972700 4110000 4862700 2694100 1259400 1434700 28984 3950 30480 151935;151936 152822;152823 152822 2 RQELEAELAK ELARLQREAAAATQKRQELEAELAKVRAEM AATQKRQELEAELAKVRAEMEVLLASKARA K R Q A K V 2 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1185.6354 Q15149 Q15149 1887 1896 PLEC Plectin yes yes 2 0.00066599 101.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1 0.98358 0.90538 39.953 7 Median 0.72003 0.74967 NaN 1 0 Median 1.29 1.2116 41.205 2 0 Median 0.55835 0.64638 NaN 1 1 Median 0.58107 0.54124 NaN 1 0 Median 1.2345 1.4002 NaN 1 0 Median 1.1555 1.0264 NaN 1 0 Median 73937000 38518000 35419000 14016000 8496200 5519700 28504000 14340000 14163000 5052900 3359900 1693000 3774200 2203900 1570300 9060700 3942100 5118600 13530000 6175800 7354000 28985 2933 30481 151937;151938;151939;151940;151941;151942;151943 152824;152825;152826;152827;152828;152829;152830;152831;152832 152832 9 RQELEQALGIR QEAVCRYFYSKVQQRRQELEQALGIRNT__ VQQRRQELEQALGIRNT_____________ R R Q I R N 1 2 0 0 0 2 2 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1311.7259 Q96GM5;F8VRQ4;H0YHV1 Q96GM5 503 513 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2;3 4.0803E-05 79.659 By MS/MS By MS/MS 2 3 0.92326 0.99718 32.379 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7868 0.84979 22.619 2 0 Median 1.446 1.3304 37.368 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32163000 15209000 16954000 0 0 0 0 0 0 26954000 13278000 13676000 5209000 1930900 3278100 0 0 0 0 0 0 28986 3659 30482 151944;151945;151946;151947;151948 152833;152834;152835;152836 152834 4 RQELEQSLVVR QEAVSRYFYCKIQQRRQELEQSLVVRNT__ IQQRRQELEQSLVVRNT_____________ R R Q V R N 0 2 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 11 1 1355.7521 Q6STE5 Q6STE5 471 481 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 2;3 3.4443E-05 88.187 By MS/MS By MS/MS 2 2 0.94585 0.94289 14.564 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79977 0.8638 3.9531 2 0 Median 1.1747 1.0808 10.874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9516100 5035400 4480700 0 0 0 0 0 0 5340800 3007500 2333300 4175300 2027900 2147400 0 0 0 0 0 0 28987 3183 30483 151949;151950;151951;151952 152837;152838;152839;152840;152841 152840 5 RQELEQVLGIR QEAVGRHIFAKVQQRRQELEQVLGIRLT__ VQQRRQELEQVLGIRLT_____________ R R Q I R L 0 2 0 0 0 2 2 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1339.7572 J3KMX2;B9EGA3;Q92925;J3QWB6 J3KMX2 444 454 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes no 2;3 4.5475E-05 141.88 By MS/MS By MS/MS By matching By matching 5 2 2 2 0.98693 1.0178 16.952 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8676 0.93706 18.272 5 1 Median 1.265 1.1787 5.2463 2 0 Median 0.91509 0.98333 18.325 2 0 Median 1.1925 1.0386 5.522 2 0 Median 64562000 31870000 32692000 0 0 0 0 0 0 47405000 23413000 23992000 4387900 1919800 2468000 9708900 5173000 4535900 3060500 1363900 1696600 28988 655 30484 151953;151954;151955;151956;151957;151958;151959;151960;151961;151962;151963 152842;152843;152844;152845;152846;152847 152843 6 RQEQIQAMPLADSQAVR ESADPLGAWLQDARRRQEQIQAMPLADSQA EQIQAMPLADSQAVREQLRQEQALLEEIER R R Q V R E 3 2 0 1 0 4 1 0 0 1 1 0 1 0 1 1 0 0 0 1 0 0 17 1 1939.9898 Q15149;H0YDN1 Q15149 1366 1382 PLEC Plectin yes no 3 1.2592E-12 99.044 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1 2 0.96677 1.0116 22.541 10 Median 0.94147 1.0231 NaN 1 1 Median 1.0976 1.0288 NaN 1 0 Median 0.61781 0.67897 7.0636 3 1 Median 1.1296 1.0527 7.2244 2 0 Median 0.99275 1.0739 NaN 1 0 Median 1.0456 0.91771 25.903 2 0 Median 88164000 48492000 39672000 29547000 17016000 12532000 21566000 11331000 10235000 21779000 12890000 8888700 4864100 2320800 2543300 6750900 3002500 3748500 3657000 1931600 1725400 28989 2933 30485;30486 151964;151965;151966;151967;151968;151969;151970;151971;151972;151973 152848;152849;152850;152851;152852;152853;152854;152855;152856 152848 1607 8 RQEQTLRDATMEVQR ETQEAAAAAAAAAARRQEQTLRDATMEVQR RQEQTLRDATMEVQRGQFQGRPVSVWDVLF R R Q Q R G 1 3 0 1 0 3 2 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 15 2 1859.9272 P58107;A0A075B730 P58107 2635 2649 EPPK1 Epiplakin yes no 3 0.0031565 30.961 By MS/MS 1 1.1019 1.2188 NaN 1 Median 1.1019 1.2188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4361100 1947900 2413100 4361100 1947900 2413100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28990 2520 30487 151974 152857;152858 152857 2 RQGGLGPIR VDSQFTHLAWINTPRRQGGLGPIRIPLLSD WINTPRRQGGLGPIRIPLLSDLTHQISKDY R R Q I R I 0 2 0 0 0 1 0 3 0 1 1 0 0 0 1 0 0 0 0 0 0 0 9 1 952.55665 Q13162;H7C3T4;A6NJJ0 Q13162 165 173 PRDX4 Peroxiredoxin-4 yes no 2 0.0062765 60.76 By MS/MS By matching 1 1 0.92977 0.88587 5.9696 2 Median 0.79449 0.84926 NaN 1 0 Median 1.0881 0.92407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8476000 4534700 3941300 7046900 3910000 3136900 1429000 624660 804360 0 0 0 0 0 0 0 0 0 0 0 0 28991 2793 30488 151975;151976 152859 152859 1 RQGHIVAISSIQGK PVALTKALLPSMIKRRQGHIVAISSIQGKM RRQGHIVAISSIQGKMSIPFRSAYAASKHA R R Q G K M 1 1 0 0 0 2 0 2 1 3 0 1 0 0 0 2 0 0 0 1 0 0 14 1 1492.8474 A0A0C4DGQ8;Q6IAN0;J3KRS1;J3QLJ8 A0A0C4DGQ8 170 183 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 3 0.00068624 40.552 By MS/MS By MS/MS By matching 1 2 1 1.1971 1.1399 13.574 4 Median 1.1205 1.1128 NaN 1 0 Median 1.4034 1.3041 15.629 2 0 Median 0.97477 1.0786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5135000 2275300 2859800 2853000 1271000 1582000 1595600 714280 881320 686470 290010 396460 0 0 0 0 0 0 0 0 0 28992 252 30489 151977;151978;151979;151980 152860;152861 152860 2 RQGLEQFINK RGDEGIFEESFIEERRQGLEQFINKIAGHP FIEERRQGLEQFINKIAGHPLAQNERCLHM R R Q N K I 0 1 1 0 0 2 1 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 10 1 1231.6673 A0A087X0R6;Q9UMY4 A0A087X0R6 120 129 SNX12 Sorting nexin-12 yes no 2;3 0.00049994 106.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 1.3079 1.1743 13.151 9 Median 1.0361 1.0202 3.4203 2 0 Median 1.4206 1.2536 1.2918 2 0 Median 1.1737 1.2198 14.455 2 1 Median 1.4234 1.26 9.9673 2 0 Median NaN NaN NaN 0 0 Median 1.1799 0.94357 NaN 1 0 Median 70660000 32588000 38072000 38127000 18774000 19353000 11029000 4392800 6636100 15329000 6923600 8405800 4622400 1926800 2695600 0 0 0 1552400 571080 981340 28993 112 30490 151981;151982;151983;151984;151985;151986;151987;151988;151989 152862;152863;152864;152865;152866;152867;152868;152869;152870;152871;152872;152873;152874;152875 152862 14 RQGVQVQVSTSNISSLEGAR GIRTGYQAKQVRRWRRQGVQVQVSTSNISS VQVSTSNISSLEGARGLIAEAAQLGPVGGV R R Q A R G 1 2 1 0 0 3 1 2 0 1 1 0 0 0 0 4 1 0 0 3 0 0 20 1 2115.1032 P49327;A0A0U1RQF0 P49327 1934 1953 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 2.8318E-28 181.4 By MS/MS By MS/MS By matching 2 4 1 1.2296 1.2128 18.347 7 Median 1.0889 1.1645 5.7446 2 0 Median 1.6228 1.5812 17.327 4 0 Median 0.95111 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86027000 37622000 48405000 60978000 28617000 32361000 22080000 7928200 14152000 2968800 1076200 1892600 0 0 0 0 0 0 0 0 0 28994 2377 30491 151990;151991;151992;151993;151994;151995;151996 152876;152877;152878;152879 152876 4 RQINHIFYR HRIYGKFLGLRAYIRRQINHIFYRFIYETE LRAYIRRQINHIFYRFIYETEHHNGIAELL R R Q Y R F 0 2 1 0 0 1 0 0 1 2 0 0 0 1 0 0 0 0 1 0 0 0 9 1 1245.6731 E9PFR3;Q14738;H0Y8C4 E9PFR3 270 278 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 3 0.00065256 69.954 By MS/MS 1 1.1953 1.1777 NaN 1 Median 1.1953 1.1777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2754100 1194200 1559900 2754100 1194200 1559900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28995 920 30492 151997 152880;152881 152881 2 RQLDSIVGER QNLEPLFEQYINNLRRQLDSIVGERGRLDS INNLRRQLDSIVGERGRLDSELRNMQDLVE R R Q E R G 0 2 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1171.6309 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668 CON__P13647 228 237 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 0.036786 45.161 By MS/MS 1 0.029073 0.027093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.029073 0.027093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1393100 1347900 45130 0 0 0 0 0 0 0 0 0 1393100 1347900 45130 0 0 0 0 0 0 + 28996 757;741;748;766 30493 151998 152882 152882 1 RQLEEAEEEAQR KDQADKASTRLKQLKRQLEEAEEEAQRANA QLKRQLEEAEEEAQRANASRRKLQRELEDA K R Q Q R A 2 2 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 12 1 1486.7012 P35579 P35579 1877 1888 MYH9 Myosin-9 yes yes 2;3 5.5549E-06 131.37 By MS/MS By MS/MS By MS/MS 2 2 1 1.0897 1.1004 13.823 5 Median 1.1122 1.1894 1.8167 2 0 Median 1.0314 1.0416 7.7745 2 0 Median 0.68207 0.86162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19196000 9366700 9829200 11365000 5206700 6158200 5854000 2829800 3024200 1976900 1330200 646760 0 0 0 0 0 0 0 0 0 28997 2244 30494 151999;152000;152001;152002;152003 152883;152884;152885;152886;152887;152888 152884 6 RQLEEAEEEATR KEQMEKANARMKQLKRQLEEAEEEATRANA QLKRQLEEAEEEATRANASRRKLQRELDDA K R Q T R A 2 2 0 0 0 1 5 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 12 1 1459.6903 P35580 P35580 1884 1895 MYH10 Myosin-10 yes yes 3 0.0001456 68.809 By MS/MS By MS/MS By MS/MS 1 1 1 1.2241 1.2601 21.067 3 Median 1.2241 1.3091 NaN 1 0 Median 1.2478 1.2601 NaN 1 0 Median 0.70692 0.893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4701900 2537300 2164600 1819100 1050000 769040 1286600 515360 771210 1596300 971960 624340 0 0 0 0 0 0 0 0 0 28998 2245 30495 152004;152005;152006 152889;152890;152891 152891 3 RQLETLGQEK SNMDNMFESYINNLRRQLETLGQEKLKLEA INNLRRQLETLGQEKLKLEAELGNMQGLVE R R Q E K L 0 1 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1200.6463 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552 P05787 149 158 KRT8 Keratin, type II cytoskeletal 8 no no 2;3 0.00051834 82.287 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 2 4 1.1829 1.1444 13.621 15 Median 1.0318 1.0288 3.2734 2 0 Median 1.2625 1.1527 20.12 3 0 Median 1.1804 1.1718 8.0123 3 0 Plateau 1.0871 1.0358 14.102 2 0 Median 1.2831 1.3155 NaN 1 0 Median 1.1426 1.0369 9.6949 4 0 Median 35222000 16198000 19024000 1759300 770850 988410 6497800 2771400 3726400 5394500 2470000 2924500 1312700 652470 660270 8990200 4160300 4829900 11267000 5372900 5894200 + 28999 750;792 30496 152007;152008;152009;152010;152011;152012;152013;152014;152015;152016;152017;152018;152019;152020;152021;152022 152892;152893;152894;152895;152896;152897;152898;152899;152900;152901;152902;152903;152904;152905;152906 152899 15 RQLFLDVLDGTK TTHADIMHLTDSVVRRQLFLDVLDGTKALL VVRRQLFLDVLDGTKALLLVPASVNCLRLG R R Q T K A 0 1 0 2 0 1 0 1 0 0 3 1 0 1 0 0 1 0 0 1 0 0 12 1 1403.7773 Q5SRE5 Q5SRE5 1130 1141 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.00095298 62.303 By MS/MS By matching 2 1 0.94788 1.0341 5.6269 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87715 1.0249 7.9244 2 0 Median 1.0712 1.0341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4122200 1888400 2233800 0 0 0 0 0 0 4046900 1849600 2197300 75321 38879 36442 0 0 0 0 0 0 29000 3074 30497 152023;152024;152025 152907;152908 152908 2 RQLFLPSMR CGSRVLQPGTALFSRRQLFLPSMRKKPALS TALFSRRQLFLPSMRKKPALSDGSNPDGDL R R Q M R K 0 2 0 0 0 1 0 0 0 0 2 0 1 1 1 1 0 0 0 0 0 0 9 1 1146.6332 P47224 P47224 41 49 RABIF Guanine nucleotide exchange factor MSS4 yes yes 2 0.0042915 67.993 By matching By MS/MS 1 1 1.1607 1.0706 33.386 2 Median 0.84737 0.84545 NaN 1 0 Median 1.59 1.3556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13264000 5664300 7599400 3780300 1889200 1891100 9483500 3775200 5708300 0 0 0 0 0 0 0 0 0 0 0 0 29001 2353 30498 152026;152027 152909;152910 152910 2 RQLGLVPR PSPAPEVPLKTVGTRRQLGLVPREKSVTYG LKTVGTRRQLGLVPREKSVTYGKGKLLMDM R R Q P R E 0 2 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 1 937.58213 P52948;A0A3B3ITD8 P52948 1113 1120 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.046024 50.966 By MS/MS By MS/MS 1 1 1.1213 1.1926 28.524 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2628 1.4592 NaN 1 0 Median 0.99571 0.97479 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1936500 853560 1083000 0 0 0 0 0 0 1085600 459660 625980 850900 393900 457000 0 0 0 0 0 0 29002 2462 30499 152028;152029 152911;152912 152912 2 RQLLLDTTDKFR VAEAWAQLQGSSAARRQLLLDTTDKFRFFK AARRQLLLDTTDKFRFFKAVRELMLWMDEV R R Q F R F 0 2 0 2 0 1 0 0 0 0 3 1 0 1 0 0 2 0 0 0 0 0 12 2 1504.8362 O15020 O15020 1900 1911 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 9.6058E-16 153.54 By MS/MS 2 0.80029 0.96171 27.211 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80029 0.96171 27.211 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19026000 10530000 8495900 0 0 0 0 0 0 19026000 10530000 8495900 0 0 0 0 0 0 0 0 0 29003 1512 30500 152030;152031 152913;152914 152913 2 RQLYLPMLFK SPLLSGSQHFDVPPRRQLYLPMLFKVRLLM DVPPRRQLYLPMLFKVRLLMVSRMAKPEEV R R Q F K V 0 1 0 0 0 1 0 0 0 0 3 1 1 1 1 0 0 0 1 0 0 0 10 1 1307.7424 O14980 O14980 406 415 XPO1 Exportin-1 yes yes 2 0.01909 40.045 By MS/MS By matching By matching 1 1 1 0.97632 1.0126 54.878 3 Median 0.97632 1.0126 NaN 1 0 Median 1.3384 1.2846 NaN 1 0 Median 0.42135 0.45094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3837900 2168800 1669100 2157000 1039700 1117300 665950 316790 349160 1015000 812320 202660 0 0 0 0 0 0 0 0 0 29004 1510 30501 152032;152033;152034 152915 152915 1 RQMIYSAAR VSRTDWHMAFTGMSRRQMIYSAARAIAGMY FTGMSRRQMIYSAARAIAGMYKQRLPPRTV R R Q A R A 2 2 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 9 1 1094.5655 Q96M27 Q96M27 422 430 PRRC1 Protein PRRC1 yes yes 2 0.027396 40.002 By MS/MS 1 1.67 1.506 NaN 1 Median NaN NaN NaN 0 0 Median 1.67 1.506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 944550 376180 568370 0 0 0 944550 376180 568370 0 0 0 0 0 0 0 0 0 0 0 0 29005 3703 30502 152035 152916 152916 1 RQNTFLVLR HLGQEVTLCGWIQYRRQNTFLVLRDFDGLV GWIQYRRQNTFLVLRDFDGLVQVIIPQDES R R Q L R D 0 2 1 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 9 1 1145.6669 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 76 84 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0164 47.198 By matching By matching By matching By MS/MS 1 1 1 1 1.3607 1.3576 33.786 4 Median 0.98259 0.96808 NaN 1 0 Median 2.0379 1.8508 NaN 1 0 Median 0.94073 1.0498 NaN 1 0 Median 1.8843 1.7557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17643000 8119900 9523400 5351700 2772900 2578900 2334900 720300 1614600 8110300 3956700 4153700 1846300 670040 1176200 0 0 0 0 0 0 29006 3171 30503 152036;152037;152038;152039 152917 152917 1 RQPEAVHLLDK PYKDIWHKVGNALWRRQPEAVHLLDKILKK ALWRRQPEAVHLLDKILKKHKPDFISLFKN R R Q D K I 1 1 0 1 0 1 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1304.7201 Q92621 Q92621 31 41 NUP205 Nuclear pore complex protein Nup205 yes yes 3 3.4688E-05 114.72 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0282 1.0119 13.369 4 Median NaN NaN NaN 0 0 Median 1.1922 1.141 NaN 1 0 Median 0.79522 0.95301 NaN 1 0 Median 1.1129 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94999 0.84387 NaN 1 0 Median 25172000 12718000 12454000 0 0 0 1356500 566120 790380 16363000 8674200 7689100 6110600 2786800 3323800 0 0 0 1341400 690820 650620 29007 3547 30504 152040;152041;152042;152043 152918;152919;152920;152921 152919 4 RQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPR DISSPGLGSTPLTSRRQPNISVMQSPLVGV TGQSMFSPASIGQPRKTTLSPAQLDPFYTQ R R Q P R K 1 2 1 0 0 4 0 4 0 2 1 0 2 1 5 6 3 0 0 3 0 0 35 1 3611.8188 Q8NFH5 Q8NFH5 112 146 NUP35 Nucleoporin NUP53 yes yes 3 8.8747E-09 55.033 By MS/MS By matching By MS/MS 1 1 1 0.42844 0.44776 5.1374 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42844 0.44718 NaN 1 1 Median 0.55563 0.48911 NaN 1 0 Median 0.4195 0.44776 NaN 1 0 Median NaN NaN NaN 0 0 Median 6545700 4953000 1592700 0 0 0 0 0 0 3829200 3087900 741290 681140 439160 241990 2035300 1425900 609450 0 0 0 29008 3437 30505 152044;152045;152046 152922;152923 152922 2 RQQEGFKGTFPDAR RREEEMRRQQEEMMRRQQEGFKGTFPDARE RRQQEGFKGTFPDAREQEIRMGQMAMGGAM R R Q A R E 1 2 0 1 0 2 1 2 0 0 0 1 0 2 1 0 1 0 0 0 0 0 14 2 1635.8118 Q15233 Q15233 365 378 NONO Non-POU domain-containing octamer-binding protein yes yes 3;4 0.00019346 65.374 By MS/MS By MS/MS 5 2 0.97263 0.95885 17.816 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87367 0.95885 21.483 5 1 Median 1.1409 0.98976 7.2648 2 1 Median 77302000 34279000 43023000 0 0 0 0 0 0 0 0 0 0 0 0 62297000 27819000 34478000 15005000 6460100 8545100 29009 2935 30506 152047;152048;152049;152050;152051;152052;152053 152924;152925;152926;152927;152928;152929 152925 5 RQQEGFKPNYMENR REEEMIRHREQEELRRQQEGFKPNYMENRE RRQQEGFKPNYMENREQEMRMGDMGPRGAI R R Q N R E 0 2 2 0 0 2 2 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 14 2 1795.8424 Q8WXF1 Q8WXF1 374 387 PSPC1 Paraspeckle component 1 yes yes 3;4 0.0019097 36.77 By MS/MS By MS/MS 3 3 0.71754 0.77145 23.671 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74571 0.79278 28.775 3 0 Plateau 0.86347 0.78756 19.367 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10819000 6029000 4790400 0 0 0 0 0 0 8264100 4811000 3453100 2555300 1218100 1337300 0 0 0 0 0 0 29010 3520 30507 152054;152055;152056;152057;152058;152059 152930;152931;152932;152933;152934 152932 5 RQQEQQVPILEK GGVHISGLHTESAPRRQQEQQVPILEKFCF APRRQQEQQVPILEKFCFTPHTEEGCLSER R R Q E K F 0 1 0 0 0 4 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 1 1494.8154 P49327;A0A0U1RQF0 P49327 1105 1116 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 3.7108E-05 96.015 By MS/MS By MS/MS 4 5 1.2013 1.1375 24.793 9 Median 0.76578 0.77428 6.9641 4 0 Median 1.2772 1.1812 9.5195 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70554000 34681000 35873000 29087000 15292000 13796000 41466000 19389000 22077000 0 0 0 0 0 0 0 0 0 0 0 0 29011 2377 30508 152060;152061;152062;152063;152064;152065;152066;152067;152068 152935;152936;152937;152938;152939;152940;152941;152942;152943;152944;152945;152946;152947;152948 152946 14 RQQEVETELK REERMERKRREKIERRQQEVETELKMWDPH EKIERRQQEVETELKMWDPHNDPNAQGDAF R R Q L K M 0 1 0 0 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1258.6517 P08621;M0QYR1;M0QX04 P08621 78 87 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2;3 0.017281 40.352 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 5 2 1 3 1.0571 1.0785 14.119 14 Median 0.83502 0.84893 NaN 1 0 Median 1.0367 0.95134 6.1218 2 0 Median 1.0824 1.1519 7.6809 5 0 Median 1.0553 0.99027 12.203 2 0 Median 0.90651 0.93782 NaN 1 0 Median 1.1832 1.0776 16.644 3 0 Median 15772000 7565000 8206800 603880 327040 276840 1829800 789460 1040300 5381900 2556300 2825600 672550 328330 344230 4592900 2327200 2265600 2690800 1236600 1454200 29012 1905 30509 152069;152070;152071;152072;152073;152074;152075;152076;152077;152078;152079;152080;152081;152082 152949;152950;152951;152952;152953;152954;152955;152956;152957 152957 9 RQQLEEQTVELSTEVQSLYR ELKSEKLQISTNLQRRQQLEEQTVELSTEV EQTVELSTEVQSLYREIKDAKEQVSPLETT R R Q Y R E 0 2 0 0 0 4 4 0 0 0 3 0 0 0 0 2 2 0 1 2 0 0 20 1 2435.2292 Q92878;A0A1W2PQ90 Q92878 884 903 RAD50 DNA repair protein RAD50 yes no 2;3 8.5622E-15 108.18 By MS/MS 2 1.008 1.2259 1.4577 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.008 1.2259 1.4577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11683000 5557500 6125500 0 0 0 0 0 0 11683000 5557500 6125500 0 0 0 0 0 0 0 0 0 29013 3561 30510 152083;152084 152958;152959;152960 152959 3 RQQQLTAMK QACCRGYLARKAFAKRQQQLTAMKVLQRNC RKAFAKRQQQLTAMKVLQRNCAAYLKLRNW K R Q M K V 1 1 0 0 0 3 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 9 1 1102.5917 P35579 P35579 802 810 MYH9 Myosin-9 no no 2 0.0033652 72.485 By matching By MS/MS By matching 1 1 1 1.1989 1.3552 13.805 3 Median 1.3251 1.3588 NaN 1 0 Median 1.1176 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1989 1.3552 NaN 1 0 Median NaN NaN NaN 0 0 Median 2546000 1191400 1354700 164510 70076 94430 1526500 708590 817870 0 0 0 0 0 0 855070 412700 442370 0 0 0 29014 2244 30511 152085;152086;152087 152961;152962 152961 2 RQQVLLLYR SRLPPATLTLKQFVRRQQVLLLYRRILQTI LKQFVRRQQVLLLYRRILQTIRQVPNDSDR R R Q Y R R 0 2 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 9 1 1187.7139 Q9NU23;E5RJK7;E5RG38;G3V136 Q9NU23 19 27 LYRM2 LYR motif-containing protein 2 yes no 2;3 0.00029302 141.78 By MS/MS By MS/MS 2 1 1.1965 1.1036 13.162 2 Median 1.0078 1.0055 NaN 1 0 Median 1.4206 1.2112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18491000 7509200 10982000 10021000 4036800 5983900 8470400 3472400 4998000 0 0 0 0 0 0 0 0 0 0 0 0 29015 4113 30512 152088;152089;152090 152963;152964;152965;152966 152966 4 RQTMLFSATQTR FEEELKQIIKLLPTRRQTMLFSATQTRKVE PTRRQTMLFSATQTRKVEDLARISLKKEPL R R Q T R K 1 2 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 12 1 1438.7351 Q9NVP1;H7C452 Q9NVP1 358 369 DDX18 ATP-dependent RNA helicase DDX18 yes no 3 0.02692 30.998 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29016 4137 30513 152091 152967 152967 1 RQTNQLQYLLR TNPPPPETSNPNKPKRQTNQLQYLLRVVLK NKPKRQTNQLQYLLRVVLKTLWKHQFAWPF K R Q L R V 0 2 1 0 0 3 0 0 0 0 3 0 0 0 0 0 1 0 1 0 0 0 11 1 1431.7946 O60885;M0QZD9;M0R0H4;M0QYW0 O60885 58 68 BRD4 Bromodomain-containing protein 4 yes no 2;3 3.9203E-05 125.74 By MS/MS By matching 2 1 0.97148 1.207 16.001 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96343 1.217 1.1764 2 0 Median 1.019 0.9228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17317000 9060200 8256800 0 0 0 0 0 0 16908000 8859000 8049100 408830 201150 207690 0 0 0 0 0 0 29017 1638 30514 152092;152093;152094 152968;152969;152970;152971 152968 4 RQVDQLTNDK SRLGDLYEEEMRELRRQVDQLTNDKARVEV MRELRRQVDQLTNDKARVEVERDNLAEDIM R R Q D K A 0 1 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1215.6208 P08670;B0YJC4 P08670 159 168 VIM Vimentin yes no 2 0.00052886 81.338 By matching By MS/MS By matching By matching 2 1 1 1 0.93371 0.99212 11.438 5 Median 0.9064 0.94243 7.266 2 0 Median 1.2217 1.1166 NaN 1 0 Median 0.94053 1.0319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90951 0.83702 NaN 1 0 Median 3252900 1464900 1788100 925710 481590 444130 1702100 667740 1034400 170560 79734 90830 0 0 0 0 0 0 454520 235790 218730 29018 1907 30515 152095;152096;152097;152098;152099 152972;152973 152973 2 RQVDQLTNDKAR SRLGDLYEEEMRELRRQVDQLTNDKARVEV ELRRQVDQLTNDKARVEVERDNLAEDIMRL R R Q A R V 1 2 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 2 1442.759 P08670;B0YJC4 P08670 159 170 VIM Vimentin yes no 3 7.5574E-05 84.718 By matching By MS/MS By MS/MS 1 1 1 0.80812 0.7795 15.436 3 Plateau 0.70039 0.7795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81339 0.93069 NaN 1 0 Median 0.78877 0.68431 NaN 1 0 Median 2398700 1226900 1171900 332250 174000 158250 0 0 0 0 0 0 0 0 0 1105700 563170 542480 960810 489680 471130 29019 1907 30516 152100;152101;152102 152974;152975;152976;152977 152976 4 RQVEEEILALK LERQKGLVEDTLRQRRQVEEEILALKASFE LRQRRQVEEEILALKASFEKAAAGKAELEL R R Q L K A 1 1 0 0 0 1 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 1 1326.7507 Q15149 Q15149 2058 2068 PLEC Plectin yes yes 2 0.00026504 110.14 By MS/MS By MS/MS By matching 1 1 1 1.1426 1.1346 14.381 3 Median 1.0889 1.1346 NaN 1 0 Median 1.1426 1.0645 NaN 1 1 Median 1.2107 1.4011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24569000 11860000 12709000 15052000 7047000 8004900 5150800 2677500 2473400 4365900 2135100 2230800 0 0 0 0 0 0 0 0 0 29020 2933 30517 152103;152104;152105 152978;152979 152978 2 RQVHIGQLYSTDK QTLVNKAKRDLGVIRRQVHIGQLYSTDKLI IRRQVHIGQLYSTDKLIIENRDMPRT____ R R Q D K L 0 1 0 1 0 2 0 1 1 1 1 1 0 0 0 1 1 0 1 1 0 0 13 1 1543.8107 Q9HD34 Q9HD34 68 80 LYRM4 LYR motif-containing protein 4 yes yes 3 0.00033617 54.276 By MS/MS 1 1.3724 1.2117 NaN 1 Median NaN NaN NaN 0 0 Median 1.3724 1.2117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3575200 1572200 2003000 0 0 0 3575200 1572200 2003000 0 0 0 0 0 0 0 0 0 0 0 0 29021 4036 30518 152106 152980 152980 1 RQVLIRPCSK ADALKSINNAEKRGKRQVLIRPCSKVIVRF EKRGKRQVLIRPCSKVIVRFLTVMMKHGYI K R Q S K V 0 2 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 2 1255.7183 H3BN98;I3L3P7;P62244;I3L246;H3BV27;H3BT37;I3L303 I3L3P7 23 32 RPS15A 40S ribosomal protein S15a no no 3 0.010958 33.088 By matching By MS/MS By matching 1 2 1 0.99909 1.1629 14.492 4 Median 0.98356 1.1406 NaN 1 0 Median 1.0931 1.1678 24.948 2 0 Median 1.0149 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1496700 720760 775970 115170 50545 64622 1309600 637400 672170 71992 32818 39174 0 0 0 0 0 0 0 0 0 29022 1289;1213 30519 152107;152108;152109;152110 152981 152981 1 RQVQSLMVHQR DVRSVVTTARMQVLKRQVQSLMVHQRKLEA QVLKRQVQSLMVHQRKLEAELLQIEERHQE K R Q Q R K 0 2 0 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 0 2 0 0 11 1 1380.7408 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;J3QR61 Q969G3 229 239 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 0.024737 22.046 By MS/MS 1 0.72873 0.78901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72873 0.78901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 908930 588420 320510 0 0 0 0 0 0 908930 588420 320510 0 0 0 0 0 0 0 0 0 29023 389 30520 152111 152982 152982 1 RQVSASELHTSGILGPETLR ETEERLSKVSFRGLRRQVSASELHTSGILG SELHTSGILGPETLRDLAQGTKTLQEVTEM R R Q L R D 1 2 0 0 0 1 2 2 1 1 3 0 0 0 1 3 2 0 0 1 0 0 20 1 2150.1444 P58107;A0A075B730 P58107 2715 2734 EPPK1 Epiplakin yes no 3;4 4.9303E-09 78.088 By MS/MS By matching 2 1 1.0734 1.1664 19.698 3 Median 1.0896 1.1841 2.1226 2 0 Median 0.89906 0.84265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24097000 12087000 12010000 20916000 10335000 10581000 3181000 1751600 1429400 0 0 0 0 0 0 0 0 0 0 0 0 29024 2520 30521 152112;152113;152114 152983;152984;152985 152984 3 RQYLLLHSLK EYLPFVLQEITSQPKRQYLLLHSLKEIISS TSQPKRQYLLLHSLKEIISSASVVGLKPYV K R Q L K E 0 1 0 0 0 1 0 0 1 0 4 1 0 0 0 1 0 0 1 0 0 0 10 1 1269.7557 Q86VP6;A0A0C4DGH5 Q86VP6 905 914 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 3 0.00091077 55.401 By MS/MS By MS/MS 1 1 1.2124 1.3163 5.2783 2 Median 1.2187 1.2681 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2061 1.3664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11400000 4846100 6554000 4656700 2010300 2646400 0 0 0 6743400 2835700 3907600 0 0 0 0 0 0 0 0 0 29025 3288 30522 152115;152116 152986;152987;152988 152987 2 RRDEDMLYSPELAQR MYGRKVGFALDLPPRRRDEDMLYSPELAQR RRDEDMLYSPELAQRGHDDDVSSTSEDDGY R R R Q R G 1 3 0 2 0 1 2 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 15 2 1877.9054 Q9Y2W2 Q9Y2W2 229 243 WBP11 WW domain-binding protein 11 yes yes 3 7.6369E-05 72.321 By MS/MS By MS/MS By matching 1 1 1 0.74004 0.89774 12.415 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74004 0.89774 NaN 1 0 Median 1.1881 0.98055 NaN 1 0 Median 0.66378 0.76739 NaN 1 0 Median NaN NaN NaN 0 0 Median 21805000 10918000 10887000 0 0 0 0 0 0 11130000 5391300 5738900 2520800 969170 1551700 8154000 4557400 3596600 0 0 0 29026 4394 30523 152117;152118;152119 152989;152990;152991 152989 3 RRDEMLGLVPMR DKLKSTESELKKKEKRRDEMLGLVPMRQSI KEKRRDEMLGLVPMRQSIIDLKEKEIPELR K R R M R Q 0 3 0 1 0 0 1 1 0 0 2 0 2 0 1 0 0 0 0 1 0 0 12 2 1471.7752 Q92878;A0A1W2PQ90;A0A494C1B7 Q92878 725 736 RAD50 DNA repair protein RAD50 yes no 3 7.6919E-05 129.34 By MS/MS 1 0.88479 1.0096 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88479 1.0096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21541000 12055000 9486100 0 0 0 0 0 0 21541000 12055000 9486100 0 0 0 0 0 0 0 0 0 29027 3561 30524 152120 152992;152993 152993 2 RRDFTPAELR GDSDDDEPPPLPRLKRRDFTPAELRRFDGV LPRLKRRDFTPAELRRFDGVQDPRILMAIN K R R L R R 1 3 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 10 2 1259.6735 O00264 O00264 70 79 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 3 0.013753 46.706 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29028 1451 30525 152121;152122 152994;152995 152994 2 RREDNLNDSSQQLQDSLR QVEKKKSAQMLEEARRREDNLNDSSQQLQD DNLNDSSQQLQDSLRKKDDRIEELEEALRE R R R L R K 0 3 2 3 0 3 1 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 18 2 2173.0472 X6RLX0;Q8IUD2;G8JLD3;K7EPD6;A0A0U1RQN0 X6RLX0 820 837 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3;4 1.4762E-11 102.58 By MS/MS 2 1.0884 1.0701 9.6231 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0884 1.0701 9.6231 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12297000 5585900 6710800 0 0 0 0 0 0 0 0 0 12297000 5585900 6710800 0 0 0 0 0 0 29029 3311 30526 152123;152124 152996;152997 152997 2 RREEEGLQLR KSYKNKSLNPDEMRRRREEEGLQLRKQKRE DEMRRRREEEGLQLRKQKREEQLFKRRNVA R R R L R K 0 3 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 2 1284.6898 P52294;C9JYI4;C9J352;C9JWD9;F2Z3G4;C9J4U1 P52294 27 36 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 3 0.00012029 81.972 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 4 1 1 1.0379 1.1635 31.94 13 Median 1.1322 1.2257 7.3691 2 0 Median 1.159 1.3189 15.738 3 1 Median 0.97408 1.1682 3.3246 2 0 Median 1.0096 0.92529 22.356 4 0 Median 0.58464 0.59077 NaN 1 0 Median 0.70412 0.62251 NaN 1 0 Median 21543000 10288000 11255000 4837600 2319200 2518400 9323200 4213500 5109600 3703500 1893500 1810000 1394100 658400 735670 1145600 715150 430440 1138800 488070 650730 29030 2449 30527 152125;152126;152127;152128;152129;152130;152131;152132;152133;152134;152135;152136;152137 152998;152999;153000;153001;153002;153003;153004;153005;153006;153007;153008;153009;153010;153011 153006 14 RREEEMMIR QKRKEMQLRQEEERRRREEEMMIRQREMEE QEEERRRREEEMMIRQREMEEQMRRQREES R R R I R Q 0 3 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 9 2 1248.6067 P23246;H0Y9K7 P23246 573 581 SFPQ Splicing factor, proline- and glutamine-rich yes no 3 0.0002572 98.048 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 8 2 3 1.1083 1.2463 30.862 19 Median 1.2402 1.5408 NaN 1 0 Median 1.2005 1.2119 NaN 1 0 Median 0.95131 1.1317 21.838 4 0 Median 1.1261 1.0836 43.92 8 0 Median 1.0951 1.2764 2.8572 2 0 Median 1.272 1.3688 4.7028 3 0 Plateau 111850000 51628000 60222000 502140 212290 289860 13704000 6105900 7597900 33565000 16650000 16915000 24190000 10277000 13913000 34059000 16067000 17992000 5830200 2316200 3514000 29031 2107 30528 152138;152139;152140;152141;152142;152143;152144;152145;152146;152147;152148;152149;152150;152151;152152;152153;152154;152155;152156 153012;153013;153014;153015;153016;153017;153018;153019;153020;153021;153022;153023;153024;153025;153026;153027;153028;153029;153030;153031;153032;153033 153021 22 RREEGPPPPSPDGASSDAEPEPPSGR ______________________________ DGASSDAEPEPPSGRTESPATAAETASEEL R R R G R T 2 3 0 2 0 0 4 3 0 0 0 0 0 0 8 4 0 0 0 0 0 0 26 2 2670.227 Q9NTJ3;E9PD53;C9JR83;C9JWF0;C9IYK2;C9JJ64;F8WCB7 Q9NTJ3 13 38 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 4 0.030413 20.24 By MS/MS By MS/MS 1 1 0.28753 0.32439 39.846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37681 0.42996 NaN 1 1 Median 0.21941 0.24474 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2450400 2041900 408440 0 0 0 0 0 0 1585900 1323600 262340 864430 718320 146110 0 0 0 0 0 0 29032 4108 30529 152157;152158 153034;153035 153035 2 RREELFIEQK ETVRRDKTLLKEKRKRREELFIEQKKRKLL KEKRKRREELFIEQKKRKLLPDTILEKLTT K R R Q K K 0 2 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 10 2 1346.7306 Q9UMY1;H7C2B1 Q9UMY1 100 109 NOL7 Nucleolar protein 7 yes no 3 0.00051608 64.297 By matching By MS/MS 1 1 0.84987 0.93761 20.632 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71037 0.81033 NaN 1 0 Median 1.0168 1.0849 NaN 1 0 Median 5866800 2798800 3068000 0 0 0 0 0 0 0 0 0 0 0 0 3733200 1944700 1788500 2133600 854030 1279500 29033 4338 30530 152159;152160 153036;153037 153037 2 RRELEEETNAFNR LKRVHQEEKRKVEEKRRELEEETNAFNRRK EKRRELEEETNAFNRRKAAVEALQSQALHA K R R N R R 1 3 2 0 0 0 4 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 13 2 1662.8074 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 385 397 SEPT8 Septin-8 yes no 3 0.019008 56.139 By MS/MS 1 0.71415 0.87519 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71415 0.87519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5423800 2675200 2748700 0 0 0 0 0 0 0 0 0 5423800 2675200 2748700 0 0 0 0 0 0 29034 118 30531 152161 153038 153038 1 RRFHWTAPAALQVTVR GLVRRPLREVSGLLKRRFHWTAPAALQVTV RFHWTAPAALQVTVRDAINQGMDEELERDE K R R V R D 3 3 0 0 0 1 0 0 1 0 1 0 0 1 1 0 2 1 0 2 0 0 16 2 1908.0595 P11177;F8WF02 P11177 21 36 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.01567 46.706 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29035 1954 30532 152162 153039 153039 1 RRFPPYYMR SAPEGQAQQRRPYRRRRFPPYYMRRPYGRR RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ R R R M R R 0 3 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 0 9 2 1284.655 P67809;H0Y449;C9J5V9 P67809 191 199 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 0.049052 19.99 By MS/MS 2 2.0242 2.6185 2.5074 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0242 2.6185 2.5074 2 0 Median NaN NaN NaN 0 0 Median 5752800 1707100 4045700 0 0 0 0 0 0 0 0 0 0 0 0 5752800 1707100 4045700 0 0 0 29036 2627 30533 152163;152164 153040 153040 1 RRGETESEEFEK APQVEAGKRLEELRRRRGETESEEFEKLKQ LRRRRGETESEEFEKLKQKQQEAALELEEL R R R E K L 0 2 0 0 0 0 5 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 12 2 1495.6903 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 281 292 CALD1 Caldesmon yes no 3 0.029198 22.533 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.85647 0.96084 24.125 5 Median 1.0888 1.0982 NaN 1 0 Median 1.139 1.2599 NaN 1 0 Median 0.85647 0.96084 NaN 1 0 Median 0.76678 0.73887 8.0133 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5499100 2911400 2587700 389020 184330 204690 614910 280750 334160 3957900 2165500 1792300 537260 280780 256480 0 0 0 0 0 0 29037 928 30534 152165;152166;152167;152168;152169 153041;153042 153042 2 RRIEVNVELR HRFKNKGKDSTEMRRRRIEVNVELRKAKKD TEMRRRRIEVNVELRKAKKDDQMLKRRNVS R R R L R K 0 3 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 2 1282.747 P52292;J3QLL0;J3KS65 P52292 30 39 KPNA2 Importin subunit alpha-1 yes no 3 0.0018081 50.284 By MS/MS 1 1.6329 1.7678 NaN 1 Median 1.6329 1.7678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2236600 830140 1406500 2236600 830140 1406500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29038 2448 30535 152170 153043;153044 153043 2 RRNPAGSVVMER SPQGSNYLIVLGSQRRRNPAGSVVMERIRM SQRRRNPAGSVVMERIRMDIRKVDAVFVGT R R R E R I 1 3 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 12 2 1370.7201 O00764;F2Z2Y4 O00764 207 218 PDXK Pyridoxal kinase yes no 3 0.067836 13.679 By MS/MS By MS/MS 1 2 0.955 0.85748 1.7825 3 Plateau 0.88673 0.85748 NaN 1 0 Median 0.955 0.83141 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579000 729510 849520 733260 284520 448740 845770 444990 400780 0 0 0 0 0 0 0 0 0 0 0 0 29039 1478 30536 152171;152172;152173 153045;153046 153045 2 RRPEIGTFLR PSSPSPTSPSPTLGRRRPEIGTFLRKKKTS PTLGRRRPEIGTFLRKKKTSDIYFVSLVWA R R R L R K 0 3 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 10 2 1243.7149 Q9H330;F8WBJ7 Q9H330 338 347 TMEM245 Transmembrane protein 245 yes no 3 0.00020902 112.83 By MS/MS By MS/MS By matching 2 2 2 0.87813 0.95107 29.388 6 Median 0.80907 0.8983 2.1216 2 0 Median 0.79821 0.7852 33.056 2 0 Median 1.1307 1.2684 27.809 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56923000 28624000 28298000 20706000 10807000 9898300 32630000 15816000 16814000 3587200 2001100 1586100 0 0 0 0 0 0 0 0 0 29040 3951 30537 152174;152175;152176;152177;152178;152179 153047;153048 153047 2 RRPEPIIPVTQPR LSSMSPLEEEAPQAKRRPEPIIPVTQPRLA AKRRPEPIIPVTQPRLAGAGGRKKIFRLSD K R R P R L 0 3 0 0 0 1 1 0 0 2 0 0 0 0 4 0 1 0 0 1 0 0 13 2 1557.9103 Q92797;A0A087WUE9;M0R3C7 Q92797 521 533 SYMPK Symplekin yes no 2;3 3.4212E-07 98.337 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.51802 0.5346 35.086 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41898 0.50827 46.605 3 0 Median 0.64997 0.64087 10.281 3 0 Median 0.30763 0.36152 NaN 1 0 Median 0.59993 0.6163 NaN 1 0 Median 91853000 61619000 30233000 0 0 0 0 0 0 71251000 49085000 22166000 15462000 8955000 6507200 3022600 2164200 858360 2117600 1415300 702320 29041 3558 30538 152180;152181;152182;152183;152184;152185;152186;152187 153049;153050;153051;153052;153053;153054;153055;153056;153057;153058;153059;153060 153051 11 RRPLNNNSEIALSLSR GNGTFVNTELVGKGKRRPLNNNSEIALSLS RPLNNNSEIALSLSRNKVFVFFDLTVDDQS K R R S R N 1 3 3 0 0 0 1 0 0 1 3 0 0 0 1 3 0 0 0 0 0 0 16 2 1839.0075 O96017;H7C0V7;C9JFD7;B7ZBF7 O96017 180 195 CHEK2 Serine/threonine-protein kinase Chk2 yes no 3 0.021999 20.048 By MS/MS By matching By matching 1 1 1 0.71902 0.84864 6.1914 3 Median 0.71048 0.76915 NaN 1 0 Median 0.74573 0.84864 NaN 1 0 Median 0.71902 0.86232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8713200 5040000 3673200 5874800 3528800 2346000 1212300 603300 609020 1626100 907920 718140 0 0 0 0 0 0 0 0 0 29042 1808 30539 152188;152189;152190 153061 153061 1 RRPQPYPYPSK LCMIFVADCLCPSKRRRPQPYPYPSKKLLS PSKRRRPQPYPYPSKKLLSESAQPLKKVEE R R R S K K 0 2 0 0 0 1 0 0 0 0 0 1 0 0 4 1 0 0 2 0 0 0 11 2 1387.7361 Q9H3N1 Q9H3N1 212 222 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 3 0.0098984 31.431 By MS/MS By matching 1 1 0.57976 0.64288 13.402 2 Median 0.55793 0.58475 NaN 1 0 Median 0.60244 0.70678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2129100 1291000 838110 1466200 948060 518110 662970 342980 320000 0 0 0 0 0 0 0 0 0 0 0 0 29043 3956 30540 152191;152192 153062 153062 1 RRPSALEADSPMAPK CTPAQGSRWPMEKKRRRPSALEADSPMAPK RRPSALEADSPMAPKRGTKRQRQSFLPCLR R R R P K R 3 2 0 1 0 0 1 0 0 0 1 1 1 0 3 2 0 0 0 0 0 0 15 2 1624.8355 A0A494BYR6;Q86Y91 A0A494BYR6 651 665 KIF18B Kinesin-like protein KIF18B yes no 3 0.01213 24.558 By MS/MS By matching 1 1 0.5302 0.58028 23.619 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41732 0.49103 NaN 1 0 Median 0.67362 0.68576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1884700 1219000 665720 0 0 0 0 0 0 1494100 968600 525540 390580 250400 140180 0 0 0 0 0 0 29044 450 30541 152193;152194 153063 153063 1 RRPTLGVQLDDK DESDSDAEEEQTTKRRRPTLGVQLDDKRKE TKRRRPTLGVQLDDKRKEMLKRHPLSVMLD R R R D K R 0 2 0 2 0 1 0 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 12 2 1396.7787 Q13769;H7C072 Q13769 325 336 THOC5 THO complex subunit 5 homolog yes no 3 5.462E-05 86.772 By matching By MS/MS By MS/MS 1 3 1 0.77659 0.96002 20.623 5 Median NaN NaN NaN 0 0 Median 1.1383 1.3858 NaN 1 0 Median 0.74833 0.87122 8.4706 3 0 Median 0.96404 0.98141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58299000 30573000 27725000 0 0 0 1159400 504980 654460 43503000 23557000 19946000 13636000 6511200 7124900 0 0 0 0 0 0 29045 2837 30542 152195;152196;152197;152198;152199 153064;153065;153066;153067;153068 153065 5 RRQEEEAGALEAGEEAR GRELQTAQAQLSEWRRRQEEEAGALEAGEE QEEEAGALEAGEEARRRAAREAEALTQRLA R R R A R R 4 3 0 0 0 1 6 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 17 2 1899.9035 Q7Z406;A0A0C4DFM8;A1L2Z2 Q7Z406 1395 1411 MYH14 Myosin-14 yes no 3 0.01699 20.939 By MS/MS 1 1.0121 1.1281 NaN 1 Median 1.0121 1.1281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1502300 803080 699220 1502300 803080 699220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29046 3242 30543 152200 153069 153069 1 RRQEQIQAMPLADSQAVR RESADPLGAWLQDARRRQEQIQAMPLADSQ EQIQAMPLADSQAVREQLRQEQALLEEIER R R R V R E 3 3 0 1 0 4 1 0 0 1 1 0 1 0 1 1 0 0 0 1 0 0 18 2 2096.0909 Q15149;H0YDN1 Q15149 1365 1382 PLEC Plectin yes no 3;4 5.9968E-15 115.26 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.96272 0.98285 11.28 6 Median 0.88529 0.97915 3.9372 2 0 Median 1.136 1.0706 15.493 2 0 Median 0.94162 1.049 17.12 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93896000 46332000 47564000 52113000 25503000 26610000 27057000 12374000 14684000 14725000 8455000 6270300 0 0 0 0 0 0 0 0 0 29047 2933 30544 152201;152202;152203;152204;152205;152206;152207 153070;153071;153072;153073;153074;153075;153076;153077;153078;153079;153080 153073 11 RRTEEGPTLSYGR ITPENLPQILLQLKRRRTEEGPTLSYGRDG KRRRTEEGPTLSYGRDGRSATREPPYRVPR R R R G R D 0 3 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 13 2 1520.7696 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 148 160 MATR3 Matrin-3 yes no 3 0.00050958 51.875 By MS/MS By MS/MS By MS/MS 1 3 2 0.84825 0.99956 12.941 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85827 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77486 0.97864 7.6655 3 0 Median 0.99824 1.0408 24.828 2 0 Median 23804000 12800000 11004000 0 0 0 0 0 0 2131900 1165600 966290 0 0 0 18499000 9984300 8514700 3173000 1649600 1523400 29048 297 30545 152208;152209;152210;152211;152212;152213 153081;153082;153083;153084 153084 4 RRVENSIPAAGETQNVEVAAGPAGK EKEWGDDEEEQPSKRRRVENSIPAAGETQN GETQNVEVAAGPAGKCAAVDVEPPSKQKEK R R R G K C 5 2 2 0 0 1 3 3 0 1 0 1 0 0 2 1 1 0 0 3 0 0 25 2 2520.3045 A0A499FI31;Q15020 A0A499FI31 663 687 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 4 0.074605 5.7053 By MS/MS 1 0.70101 0.75503 NaN 1 Median 0.70101 0.75503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2251900 1068900 1183000 2251900 1068900 1183000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29049 473 30546 152214 153085 153085 1 RSDDMFTFHGPGK TENMGSSQQKNSGFRRSDDMFTFHGPGKSV FRRSDDMFTFHGPGKSVFGTPTLETANKNH R R S G K S 0 1 0 2 0 0 0 2 1 0 0 1 1 2 1 1 1 0 0 0 0 0 13 1 1493.6721 P49792 P49792 1127 1139 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 5.7998E-05 79.875 By MS/MS By MS/MS 2 1 0.87627 0.86915 20.422 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72309 0.82985 28.633 2 0 Median 0.9331 0.86915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15270000 7771100 7498900 0 0 0 0 0 0 14395000 7290000 7104800 875160 481070 394090 0 0 0 0 0 0 29050 2401 30547 152215;152216;152217 153086;153087;153088 153086 3 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR PDSTRRTDVGAGALRRSDSPEIPFQAAAGP GLDASSPGNSFVGLRVVAKWSSNGYFYSGK R R S L R V 4 2 1 3 0 1 1 4 0 1 2 0 0 2 4 6 0 0 0 1 0 0 32 1 3201.5327 A6NNK5;Q12888 A6NNK5 1414 1445 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 0.00052309 26.493 By MS/MS 1 0.41798 0.52801 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41798 0.52801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1277600 930400 347220 0 0 0 0 0 0 1277600 930400 347220 0 0 0 0 0 0 0 0 0 29051 530 30548 152218 153089 153089 1 RSDSSSSISSQSPIARGR KNDPCRVHHPGSKIKRSDSSSSISSQSPIA SSSSISSQSPIARGRTNIELREKFILPEGA K R S G R T 1 3 0 1 0 1 0 1 0 2 0 0 0 0 1 8 0 0 0 0 0 0 18 2 1876.9351 H3BPE1;H3BQK9;H0Y7I1 H3BPE1 7306 7323 MACF1 yes no 3 0.067095 9.2834 By MS/MS 2 0.92312 1.0284 0 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92312 1.0284 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2735900 1285600 1450300 0 0 0 0 0 0 2735900 1285600 1450300 0 0 0 0 0 0 0 0 0 29052 1220 30549 152219;152220 153090 153090 1 RSEDEPPAASASAAPPPQRDEEEPDGVPEK AVGSAMLTRAAPGPRRSEDEPPAASASAAP PPQRDEEEPDGVPEKGKSSGPSARKGKGQI R R S E K G 5 2 0 3 0 1 6 1 0 0 0 1 0 0 7 3 0 0 0 1 0 0 30 2 3157.4436 Q96IZ0;H0YI16 Q96IZ0 107 136 PAWR PRKC apoptosis WT1 regulator protein yes no 4 9.4774E-06 36.202 By MS/MS 2 0.28083 0.34411 23.934 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28083 0.34411 23.934 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9585700 7155800 2429900 0 0 0 0 0 0 9585700 7155800 2429900 0 0 0 0 0 0 0 0 0 29053 3681 30550 152221;152222 153091;153092;153093 153093 3 RSELEEQQMHLNVGLR YLDFINHYANLFHEKRSELEEQQMHLNVGL SELEEQQMHLNVGLRKIKETVDQVEELRRD K R S L R K 0 2 1 0 0 2 3 1 1 0 3 0 1 0 0 1 0 0 0 1 0 0 16 1 1937.9741 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3191 3206 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 7.3531E-09 128.85 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1.0355 1.1116 6.9453 10 Median 1.0049 1.092 6.5167 3 0 Median 1.2194 1.1429 11.007 2 0 Median 0.99741 1.136 5.4624 3 0 Median 1.2395 1.1386 8.4332 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123780000 56591000 67189000 60107000 29435000 30672000 39579000 16292000 23287000 20893000 9553700 11339000 3201000 1310100 1890900 0 0 0 0 0 0 29054 2865 30551;30552 152223;152224;152225;152226;152227;152228;152229;152230;152231;152232 153094;153095;153096;153097;153098;153099;153100;153101;153102;153103;153104 153101 1559 11 RSELEEQQMHLNVGLRK YLDFINHYANLFHEKRSELEEQQMHLNVGL ELEEQQMHLNVGLRKIKETVDQVEELRRDL K R S R K I 0 2 1 0 0 2 3 1 1 0 3 1 1 0 0 1 0 0 0 1 0 0 17 2 2066.0691 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3191 3207 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 4 9.9639E-06 51.235 By MS/MS By MS/MS By MS/MS 2 1 1 0.96017 1.0059 23.841 4 Median 0.81628 0.80984 7.6915 2 0 Median 1.2899 1.2439 NaN 1 0 Median 1.0401 1.1832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49702000 22725000 26977000 19510000 9639000 9871100 16067000 7237500 8829900 14125000 5849000 8275800 0 0 0 0 0 0 0 0 0 29055 2865 30553 152233;152234;152235;152236 153105;153106;153107;153108;153109 153107 4 RSENEEFVEVGR EFFIILEGSAAVLQRRSENEEFVEVGRLGP LQRRSENEEFVEVGRLGPSDYFGEIALLMN R R S G R L 0 2 1 0 0 0 4 1 0 0 0 0 0 1 0 1 0 0 0 2 0 0 12 1 1449.6848 P10644;K7EM13 P10644 306 317 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2;3 0.001016 70.942 By MS/MS By MS/MS 1 1 1.0451 0.99731 9.946 2 Median 0.92052 0.92958 NaN 1 1 Median 1.1865 1.07 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6767200 3568000 3199200 4175800 2371100 1804700 2591400 1196800 1394500 0 0 0 0 0 0 0 0 0 0 0 0 29056 1945 30554 152237;152238 153110;153111 153111 2 RSEVAKDFEPER EAAIQQEHREKELQKRSEVAKDFEPERVVA LQKRSEVAKDFEPERVVAAPQRPGTEPQPE K R S E R V 1 2 0 1 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 12 2 1461.7212 O95202 O95202 488 499 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 0.04248 33.195 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29057 1754 30555 152239 153112 153112 1 RSFITTDVNPYYDSFVR AIQDLKRMGLKVDWRRSFITTDVNPYYDSF FITTDVNPYYDSFVRWQFLTLRERNKIKFG R R S V R W 0 2 1 2 0 0 0 0 0 1 0 0 0 2 1 2 2 0 2 2 0 0 17 1 2079.0062 Q9P2J5 Q9P2J5 203 219 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 4.283E-05 48.053 By MS/MS 1 0.77306 0.85889 NaN 1 Median 0.77306 0.85889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2394900 1345600 1049400 2394900 1345600 1049400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29058 4224 30556 152240 153113 153113 1 RSINQPVAFVR ______________________________ AALRRSINQPVAFVRRIPWTAASSQLKEHF R R S V R R 1 2 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 2 0 0 11 1 1285.7255 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJI1 Q9GZT3 14 24 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2;3 1.5455E-14 182.46 By MS/MS By MS/MS 3 4 1.2633 1.0771 63.767 7 Median 0.87901 0.95312 8.596 3 0 Median 1.5782 1.4242 72.745 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95686000 34396000 61290000 26925000 12662000 14263000 68761000 21734000 47028000 0 0 0 0 0 0 0 0 0 0 0 0 29059 3914 30557 152241;152242;152243;152244;152245;152246;152247 153114;153115;153116;153117;153118;153119;153120 153119 7 RSLFDYHDTR DAQFENYLQEELKIRRSLFDYHDTRIHVCL ELKIRRSLFDYHDTRIHVCLYFITPTGHSL R R S T R I 0 2 0 2 0 0 0 0 1 0 1 0 0 1 0 1 1 0 1 0 0 0 10 1 1308.6211 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599;C9JV02;C9J4G8 A0A087X142 137 146 SEPT8 Septin-8 yes no 3 0.012631 27.149 By MS/MS By matching 1 1 0.83009 0.8285 32.845 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60661 0.65679 NaN 1 0 Median 1.1359 1.0451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4285500 2172300 2113200 0 0 0 0 0 0 2615700 1479100 1136700 1669700 693180 976550 0 0 0 0 0 0 29060 118 30558 152248;152249 153121 153121 1 RSLGYAYVNFQQPADAER GPILSIRVCRDMITRRSLGYAYVNFQQPAD GYAYVNFQQPADAERALDTMNFDVIKGKPV R R S E R A 3 2 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 18 1 2084.0076 B1ANR0;Q13310;B1ANR1;P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YBN4;E5RGH3;E5RJB9;E5RH24;E5RHG7 P11940 50 67 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 3 1.0448E-14 145.43 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.0835 1.1006 9.2169 5 Median 1.0089 1.014 7.264 2 0 Median 1.2506 1.1358 NaN 1 0 Median 0.98627 1.1006 NaN 1 0 Median 1.4 1.2405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54542000 26351000 28191000 39680000 19210000 20470000 2778800 1341200 1437600 11809000 5690300 6118600 274170 109230 164940 0 0 0 0 0 0 29061 1973;576 30559 152250;152251;152252;152253;152254 153122;153123;153124;153125 153123 3 RSNVLTGLQDSSTDNR PKPKPLVVQVPTFARRSNVLTGLQDSSTDN SNVLTGLQDSSTDNRAKLDLGAQGKGQGHQ R R S N R A 0 2 2 2 0 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 16 1 1761.8606 O00257 O00257 89 104 CBX4 E3 SUMO-protein ligase CBX4 yes yes 3 0.0010025 46.892 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29062 1450 30560 152255 153126 153126 1 RSPHFFQPTNQQFK NNSNYGWRALRLLARRSPHFFQPTNQQFKS RRSPHFFQPTNQQFKSLPEYLENMVIKLAK R R S F K S 0 1 1 0 0 3 0 0 1 0 0 1 0 3 2 1 1 0 0 0 0 0 14 1 1760.8747 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 503 516 THOC1 THO complex subunit 1 yes no 3;4 0.00021343 56.527 By MS/MS By MS/MS 2 3 0.68283 0.70062 38.839 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66272 0.70478 4.0887 2 0 Median 0.74021 0.70062 51.937 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66744000 36970000 29774000 0 0 0 0 0 0 47500000 27068000 20432000 19244000 9901900 9342200 0 0 0 0 0 0 29063 62 30561 152256;152257;152258;152259;152260 153127;153128;153129;153130;153131 153130 4 RSPPADAIPK ______________________________ RIAKRRSPPADAIPKSKKVKVSHRSHSTEP R R S P K S 2 1 0 1 0 0 0 0 0 1 0 1 0 0 3 1 0 0 0 0 0 0 10 1 1050.5822 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;M0R1Q8 P18754 10 19 RCC1 Regulator of chromosome condensation yes no 2 0.020213 39.022 By MS/MS By MS/MS By matching 2 1 1 0.63355 0.64782 8.8577 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58908 0.63245 10.272 2 0 Median 0.74014 0.71403 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67242 0.61707 NaN 1 0 Median 4409700 2403200 2006600 0 0 0 0 0 0 2396300 1505000 891300 1223800 669700 554140 0 0 0 789580 228440 561130 29064 2061 30562 152261;152262;152263;152264 153132;153133;153134;153135 153135 4 RSPPIPLAK KLAPEYEKAAKELSKRSPPIPLAKVDATAE AKELSKRSPPIPLAKVDATAETDLAKRFDV K R S A K V 1 1 0 0 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 9 1 977.6022 P13667;A0A499FI48 P13667 226 234 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.0033325 72.643 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.71547 0.71149 17.684 6 Median 0.59224 0.60415 9.8295 2 0 Median 0.89852 0.85543 10.985 2 0 Median 0.61654 0.65528 NaN 1 0 Median 0.81029 0.77251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25376000 12808000 12568000 5211900 2812500 2399400 16949000 8323300 8625300 2013800 1112800 901030 1201200 559310 641900 0 0 0 0 0 0 29065 1993 30563 152265;152266;152267;152268;152269;152270 153136;153137;153138;153139 153137 4 RSPVPAQIAITVPK GQTEEILDSQNLNSRRSPVPAQIAITVPKT RRSPVPAQIAITVPKTWKKPKDRTRTTEEM R R S P K T 2 1 0 0 0 1 0 0 0 2 0 1 0 0 3 1 1 0 0 2 0 0 14 1 1475.8824 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 683 696 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.00095878 64.121 By MS/MS 1 0.51506 0.51918 NaN 1 Median 0.51506 0.51918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6387400 4414400 1973000 6387400 4414400 1973000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29066 300 30564 152271 153140 153140 1 RSQAGVSSGAPPGR LSLPGYRPTTRSSARRSQAGVSSGAPPGRN RRSQAGVSSGAPPGRNSFYMGTCQDEPEQL R R S G R N 2 2 0 0 0 1 0 3 0 0 0 0 0 0 2 3 0 0 0 1 0 0 14 1 1325.68 A0A087WY61;Q14980 Q14980 1886 1899 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.0016144 36.445 By matching By MS/MS 1 1 0.6018 0.7035 1.7118 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5502 0.69504 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65824 0.71207 NaN 1 0 Median NaN NaN NaN 0 0 Median 826400 485700 340700 0 0 0 0 0 0 290700 196760 93940 0 0 0 535700 288950 246750 0 0 0 29067 2905;77 30565 152272;152273 153141 153141 1 RSQVEQQQLITVEK NEGKEMCVLRMTRARRSQVEQQQLITVEKA RRSQVEQQQLITVEKALAILSQPTPSLVVD R R S E K A 0 1 0 0 0 4 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 14 1 1684.9108 Q6PL18;A0A0B4J211 Q6PL18 1301 1314 ATAD2 ATPase family AAA domain-containing protein 2 yes no 3 0.00016997 63.128 By MS/MS 1 0.73691 0.83348 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73691 0.83348 NaN 1 0 Median NaN NaN NaN 0 0 Median 4696600 2527500 2169100 0 0 0 0 0 0 0 0 0 0 0 0 4696600 2527500 2169100 0 0 0 29068 3177 30566 152274 153142;153143 153142 2 RSSFLQVFNNSPDESSYYR SETFSLYPQFMFHLRRSSFLQVFNNSPDES LQVFNNSPDESSYYRHHFMRQDLTQSLIMI R R S Y R H 0 2 2 1 0 1 1 0 0 0 1 0 0 2 1 5 0 0 2 1 0 0 19 1 2295.0556 F5H365;Q15436 F5H365 557 575 SEC23A Protein transport protein Sec23A yes no 3 0.002652 37.999 By MS/MS 2 0.81927 0.84 9.7616 2 Median 0.81927 0.84 9.7616 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3945000 2058200 1886800 3945000 2058200 1886800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29069 1029 30567 152275;152276 153144;153145 153144 2 RSTQESLTAGGTDLKR AKQMPRAAPATRVTRRSTQESLTAGGTDLK STQESLTAGGTDLKRELHPPATSHEAPGTK R R S K R E 1 2 0 1 0 1 1 2 0 0 2 1 0 0 0 2 3 0 0 0 0 0 16 2 1718.8911 A0A0B4J2G4;Q15345;A0A087X0S7;A0A087WTU1;A0A0C4DH00 A0A0B4J2G4 303 318 LRRC41 Leucine-rich repeat-containing protein 41 yes no 3 0.0014006 34.498 By MS/MS 1 1.0677 1.2563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0677 1.2563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2045300 1018300 1027100 0 0 0 0 0 0 2045300 1018300 1027100 0 0 0 0 0 0 0 0 0 29070 226 30568 152277 153146;153147 153146 2 RSTQGVTLTDLQEAEK ESQRKARSRQARQSRRSTQGVTLTDLQEAE STQGVTLTDLQEAEKTIGRSRSTRTREQEN R R S E K T 1 1 0 1 0 2 2 1 0 0 2 1 0 0 0 1 3 0 0 1 0 0 16 1 1774.9061 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 694 709 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 0.0095361 34.094 By MS/MS 1 1.1801 1.1341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1801 1.1341 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2555700 1039300 1516400 0 0 0 0 0 0 0 0 0 2555700 1039300 1516400 0 0 0 0 0 0 29071 1508 30569 152278 153148 153148 1 RSTSSFSCLSR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R R S S R H 0 2 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 11 1 1286.6037 CON__P35908;CON__P35908v2;P35908 CON__P35908 35 45 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 0.0075356 46.88 By MS/MS 3 0.2177 0.19227 50.131 2 Median NaN NaN NaN 0 0 Median 0.2177 0.19227 50.131 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2969300 2752300 217050 0 0 0 2969300 2752300 217050 0 0 0 0 0 0 0 0 0 0 0 0 + 29072 764;765 30570 152279;152280;152281 153149;153150;153151 153151 3 RSTVAQLVK EKKKLYCIYVAIGQKRSTVAQLVKRLTDAD VAIGQKRSTVAQLVKRLTDADAMKYTIVVS K R S V K R 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 9 1 1000.6029 P25705;K7ENJ4 P25705 253 261 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.0086936 55.549 By MS/MS By MS/MS By matching 1 1 1 1.382 1.2848 22.189 3 Plateau 1.1508 1.1555 NaN 1 0 Median 1.408 1.2848 NaN 1 0 Median 0.76622 0.83894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11586000 5369200 6216500 2783600 1447000 1336600 8682200 3857900 4824300 119950 64327 55624 0 0 0 0 0 0 0 0 0 29073 2135 30571 152282;152283;152284 153152;153153;153154 153154 3 RSTYNHLSSWLTDAR YRGAAGALMVYDITRRSTYNHLSSWLTDAR RSTYNHLSSWLTDARNLTNPNTVIILIGNK R R S A R N 1 2 1 1 0 0 0 0 1 0 2 0 0 0 0 3 2 1 1 0 0 0 15 1 1805.8809 P61106;X6RFL8 P61106 96 110 RAB14 Ras-related protein Rab-14 yes no 3 0.0023392 45.014 By MS/MS By MS/MS 1 1 1.2019 1.1452 9.8022 2 Median 1.1482 1.2274 NaN 1 1 Median 1.2581 1.0685 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36358000 16837000 19520000 30391000 14034000 16357000 5966800 2803800 3163000 0 0 0 0 0 0 0 0 0 0 0 0 29074 2545 30572 152285;152286 153155;153156 153156 2 RSVASQFFTQEEGPGIDGMTTSER ______________________________ QEEGPGIDGMTTSERVVDLLNQAALITNDS R R S E R V 1 2 0 1 0 2 3 3 0 1 0 0 1 2 1 3 3 0 0 1 0 0 24 1 2629.2078 Q92797;A0A087WUE9;M0R3C7;M0QXP5;M0R1C2;M0R180;M0R039 Q92797 12 35 SYMPK Symplekin yes no 3 5.7454E-28 98.7 By MS/MS 1 0.75661 0.9202 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75661 0.9202 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10395000 5618100 4776800 0 0 0 0 0 0 10395000 5618100 4776800 0 0 0 0 0 0 0 0 0 29075 3558 30573 152287 153157 153157 1 RSVPTWLK HAPGKGLSQSALPYRRSVPTWLKLTSDDVK QSALPYRRSVPTWLKLTSDDVKEQIYKLAK R R S L K L 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 8 1 985.5709 P62277;J3KMX5;E9PS50 P62277 20 27 RPS13 40S ribosomal protein S13 yes no 2 0.0096342 69.825 By MS/MS By MS/MS By matching 1 1 1 1.0735 0.87081 15.823 3 Median 0.70848 0.69743 NaN 1 0 Median 1.0735 0.94739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0885 0.87081 NaN 1 0 Median 25034000 12903000 12131000 17611000 9385800 8225100 7039500 3374700 3664800 0 0 0 0 0 0 0 0 0 383260 142260 241000 29076 2580 30574 152288;152289;152290 153158;153159;153160;153161 153159 4 RSVSDNDIR EIRRDHFEEAMRFARRSVSDNDIRKYEMFA AMRFARRSVSDNDIRKYEMFAQTLQQSRGF R R S I R K 0 2 1 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 1 0 0 9 1 1060.5261 P55072 P55072 745 753 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.056291 33.797 By MS/MS By MS/MS 2 2 1.1015 1.1506 11.343 4 Median 1.078 1.1506 10.146 2 0 Median 1.1741 1.1129 16.491 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2981300 1399400 1581900 1552500 741720 810760 1428800 657710 771130 0 0 0 0 0 0 0 0 0 0 0 0 29077 2494 30575 152291;152292;152293;152294 153162;153163 153162 2 RSYDVPPPPMEPDHPFYSNISK ETAAKHGEAQVKIWRRSYDVPPPPMEPDHP PPMEPDHPFYSNISKDRRYADLTEDQLPSC R R S S K D 0 1 1 2 0 0 1 0 1 1 0 1 1 1 6 3 0 0 2 1 0 0 22 1 2572.2057 P18669;Q8N0Y7 P18669 117 138 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 3;4 0.00015817 46.178 By MS/MS By MS/MS 3 2 0.48915 0.45431 81.04 5 Median 0.42591 0.44305 108.33 3 2 Median 0.55649 0.51618 18.055 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162400000 81722000 80682000 150730000 74623000 76110000 11671000 7099400 4571600 0 0 0 0 0 0 0 0 0 0 0 0 29078 2060 30576 152295;152296;152297;152298;152299 153164;153165;153166;153167 153165 4 RSYVTMTATK EFDQNVKLWGVIDVKRSYVTMTATKIEITM VIDVKRSYVTMTATKIEITMRKAEPMQWAS K R S T K I 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 3 0 1 1 0 0 10 1 1156.591 Q9UHD1;E9PHZ2 Q9UHD1 290 299 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.020213 39.022 By matching By MS/MS 1 1 0.97374 0.97168 21.407 2 Median 1.059 1.1305 NaN 1 0 Median 0.89539 0.83519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1297100 672380 624690 506920 268120 238800 790140 404260 385890 0 0 0 0 0 0 0 0 0 0 0 0 29079 4275 30577 152300;152301 153168 153168 1 RTAATLATHELR FLTSQTKLHEDLCEKRTAATLATHELRAVK CEKRTAATLATHELRAVKGPLLYCARPPQD K R T L R A 3 2 0 0 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 0 0 12 1 1338.7368 Q8N1G4 Q8N1G4 370 381 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 0.00078749 46.481 By MS/MS By MS/MS 1 1 1.2691 1.2159 11.439 2 Median 1.3381 1.3184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2036 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2957100 1336100 1621100 2375900 1039200 1336800 0 0 0 0 0 0 581200 296890 284310 0 0 0 0 0 0 29080 3359 30578 152302;152303 153169;153170 153170 1 RTAQEVETYR KFEKNFYQEHPDLARRTAQEVETYRRSKEI PDLARRTAQEVETYRRSKEITVRGHNCPKP R R T Y R R 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4 J3KTA4 68 77 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 0.0007462 81.972 By MS/MS By MS/MS By matching 2 3 2 1.2784 1.2272 14.413 7 Median NaN NaN NaN 0 0 Median 1.4805 1.3446 13.904 2 0 Median 1.2326 1.3755 8.8004 3 2 Median 1.1587 1.0796 13.902 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21357000 9181400 12175000 0 0 0 4402900 1833000 2570000 16417000 7099100 9317600 536970 249420 287560 0 0 0 0 0 0 29081 1334 30579 152304;152305;152306;152307;152308;152309;152310 153171;153172;153173;153174;153175 153172 5 RTAQEVETYRR KFEKNFYQEHPDLARRTAQEVETYRRSKEI DLARRTAQEVETYRRSKEITVRGHNCPKPV R R T R R S 1 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 11 2 1407.7219 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4 J3KTA4 68 78 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.0015736 47.288 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 3 2 1.0555 1.1778 29.165 10 Median 1.1863 1.2843 NaN 1 0 Median 1.1174 1.2152 71.338 2 0 Median 1.2373 1.3642 NaN 1 0 Median 1.0461 0.95753 NaN 1 0 Median 1.0649 1.4031 23.391 3 0 Plateau 1.0874 1.1361 24.584 2 0 Median 14889000 6499700 8389200 1543300 683490 859840 2299700 753330 1546400 5261100 2153000 3108100 121920 64204 57713 3432000 1772600 1659400 2230800 1073100 1157700 29082 1334 30580 152311;152312;152313;152314;152315;152316;152317;152318;152319;152320 153176;153177;153178;153179;153180;153181;153182 153179 7 RTDDIPVWDQEFLK KDDPPPPEDDENKEKRTDDIPVWDQEFLKY KRTDDIPVWDQEFLKYTLRKTTVSLQAANY K R T L K Y 0 1 0 3 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 1 0 0 14 1 1760.8733 E5RJR5;P63208;E7ERH2;F8W8N3;E5RGM3 E5RJR5 81 94 SKP1 S-phase kinase-associated protein 1 yes no 2;3 0.00074541 68.069 By MS/MS By matching 2 2 0.95563 0.97185 16.959 4 Linear 0.93437 0.92709 10.85 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6969 0.74193 15.77 2 0 Median NaN NaN NaN 0 0 Median 13671000 6564200 7106500 8943600 4464300 4479300 0 0 0 0 0 0 0 0 0 4727200 2099900 2627200 0 0 0 29083 853 30581 152321;152322;152323;152324 153183;153184 153183 2 RTDEEGKDVPDHAVLEMK VICPTDEDLKDRTIKRTDEEGKDVPDHAVL EEGKDVPDHAVLEMKANFTLPDVGDFLDEV K R T M K A 1 1 0 3 0 0 3 1 1 0 1 2 1 0 1 0 1 0 0 2 0 0 18 2 2067.9895 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1 Q9BUJ2 545 562 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3;4 3.7492E-09 97.32 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1 0.92993 1.0231 27.278 9 Median 0.84347 0.94375 11.575 2 0 Median 1.0544 1.0797 7.6205 2 0 Median 0.82552 1.0284 NaN 1 0 Median 1.5698 1.7891 NaN 1 0 Median 0.61109 0.72012 4.4978 2 0 Median 0.94458 0.9691 NaN 1 0 Median 45034000 24077000 20958000 6653700 3373300 3280500 2499800 899920 1599900 5935100 2804000 3131200 1150600 521520 629040 26915000 15608000 11307000 1879800 869870 1009900 29084 3840 30582 152325;152326;152327;152328;152329;152330;152331;152332;152333 153185;153186;153187;153188;153189;153190;153191;153192;153193 153189 9 RTDIFGVEETAIGK PGLDIESSLKQLAERRTDIFGVEETAIGKK RRTDIFGVEETAIGKKIGEEEIQKPEEKVT R R T G K K 1 1 0 1 0 0 2 2 0 2 0 1 0 1 0 0 2 0 0 1 0 0 14 1 1534.7991 Q15459 Q15459 473 486 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 1.1988E-07 115.33 By matching By matching By MS/MS By MS/MS By MS/MS By matching 3 1 3 3 4 2 1.0977 1.1659 40.07 16 Median 1.3293 1.2828 94.28 3 0 Median 1.0098 0.96183 NaN 1 0 Median 1.0638 1.2033 17.862 3 0 Median 1.2037 1.1568 9.4318 3 0 Median 1.1797 1.3017 13.197 4 0 Median 1.1035 0.96841 12.688 2 0 Median 94529000 44233000 50296000 7613000 4444000 3169000 1377400 651980 725440 48487000 22644000 25843000 10710000 4923300 5786700 24602000 10746000 13856000 1739700 824030 915650 29085 2954 30583 152334;152335;152336;152337;152338;152339;152340;152341;152342;152343;152344;152345;152346;152347;152348;152349 153194;153195;153196;153197;153198;153199;153200;153201;153202 153194 9 RTDIFGVEETAIGKK PGLDIESSLKQLAERRTDIFGVEETAIGKK RTDIFGVEETAIGKKIGEEEIQKPEEKVTW R R T K K I 1 1 0 1 0 0 2 2 0 2 0 2 0 1 0 0 2 0 0 1 0 0 15 2 1662.8941 Q15459 Q15459 473 487 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 1.5254E-08 113.65 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 4 1 1.0477 1.1563 17.025 9 Median 1.13 1.2844 NaN 1 0 Median 0.94345 0.85841 NaN 1 0 Median 1.0544 1.3135 NaN 1 0 Median 1.1788 1.3434 NaN 1 0 Median 0.93177 1.0967 15.456 4 2 Median 1.127 1.1563 NaN 1 0 Median 223980000 108170000 115810000 19554000 9005500 10548000 625980 288700 337280 49065000 22904000 26161000 7008200 2757200 4251000 143080000 71036000 72044000 4645900 2175000 2471000 29086 2954 30584 152350;152351;152352;152353;152354;152355;152356;152357;152358 153203;153204;153205;153206;153207;153208;153209;153210;153211;153212;153213;153214 153210 12 RTDSQLQGQVLFR MLWTNMAISSVAEFRRTDSQLQGQVLFRHL FRRTDSQLQGQVLFRHLAGLAELLPESRRQ R R T F R H 0 2 0 1 0 3 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 13 1 1546.8216 Q9NU22 Q9NU22 3129 3141 MDN1 Midasin yes yes 3 4.4969E-05 92.295 By MS/MS 2 1.1076 1.2173 6.5812 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1076 1.2173 6.5812 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22370000 10036000 12333000 0 0 0 0 0 0 22370000 10036000 12333000 0 0 0 0 0 0 0 0 0 29087 4112 30585 152359;152360 153215;153216 153215 2 RTEEGPTLSYGR TPENLPQILLQLKRRRTEEGPTLSYGRDGR KRRRTEEGPTLSYGRDGRSATREPPYRVPR R R T G R D 0 2 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 12 1 1364.6684 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 149 160 MATR3 Matrin-3 yes no 2;3 4.0326E-06 91.123 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 4 0.88986 0.85156 18.756 9 Median NaN NaN NaN 0 0 Median 1.3385 1.2904 NaN 1 0 Median 0.73608 0.80104 27.191 2 0 Median 0.99473 0.97383 NaN 1 0 Median 0.82664 0.8962 10.113 2 1 Median 0.92645 0.82529 5.2032 3 0 Median 33842000 18007000 15834000 0 0 0 3237400 1365900 1871500 8176000 4193800 3982200 3695100 1846100 1849100 14171000 8297600 5873900 4561800 2304100 2257600 29088 297 30586 152361;152362;152363;152364;152365;152366;152367;152368;152369;152370;152371 153217;153218;153219;153220;153221;153222;153223;153224;153225;153226;153227;153228 153222 11 RTEEGPTLSYGRDGR TPENLPQILLQLKRRRTEEGPTLSYGRDGR RTEEGPTLSYGRDGRSATREPPYRVPRDDW R R T G R S 0 3 0 1 0 0 2 3 0 0 1 0 0 0 1 1 2 0 1 0 0 0 15 2 1692.818 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 149 163 MATR3 Matrin-3 yes no 3 0.01737 22.857 By MS/MS By MS/MS 1 3 0.88247 0.90846 24.131 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64918 0.75051 NaN 1 0 Median 0.98899 1.016 22.852 3 0 Median 6154600 3658500 2496100 0 0 0 0 0 0 0 0 0 0 0 0 3597500 2368900 1228600 2557100 1289600 1267500 29089 297 30587 152372;152373;152374;152375 153229;153230 153230 2 RTEITIVKPQESAHR RAEVLGHKTPEPAPRRTEITIVKPQESAHR RTEITIVKPQESAHRRMEPPASKVPEVPTA R R T H R R 1 2 0 0 0 1 2 0 1 2 0 1 0 0 1 1 2 0 0 1 0 0 15 2 1763.9642 Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8 149 163 SEPT9 Septin-9 yes no 3;4 1.8569E-10 121.92 By matching By MS/MS By MS/MS By matching By MS/MS 1 5 7 2 2 1.0357 1.0318 15.423 17 Median 0.98374 0.99231 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88881 0.99137 13.926 5 0 Median 1.1993 1.2112 13.315 7 0 Median 0.72069 0.8338 5.7228 2 0 Median 1.1522 0.99916 6.6195 2 0 Median 172960000 84422000 88535000 375020 201840 173180 0 0 0 84935000 43677000 41258000 81516000 37662000 43854000 3059800 1607900 1451800 3071200 1272600 1798600 29090 4276 30588 152376;152377;152378;152379;152380;152381;152382;152383;152384;152385;152386;152387;152388;152389;152390;152391;152392 153231;153232;153233;153234;153235;153236;153237;153238;153239;153240;153241;153242;153243;153244;153245;153246;153247;153248;153249;153250;153251;153252;153253;153254;153255;153256;153257 153239 27 RTELFLKEHDHLR GSVRKDIDGSGVNNRRTELFLKEHDHLRNI NRRTELFLKEHDHLRNIAMATKENMTSQRG R R T L R N 0 2 0 1 0 0 2 0 2 0 3 1 0 1 0 0 1 0 0 0 0 0 13 2 1692.906 K7EJC8;E9PCW1;O95249;B4DQA8;G5E9T8 K7EJC8 155 167 GOSR1 Golgi SNAP receptor complex member 1 yes no 4 0.026698 32.734 By MS/MS 1 1.3153 1.3197 NaN 1 Median 1.3153 1.3197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2993800 1533700 1460100 2993800 1533700 1460100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29091 913 30589 152393 153258 153258 1 RTELSIDISSK RVELSGPKAAEPVSRRTELSIDISSKQVEN PVSRRTELSIDISSKQVENAGAIGPSRFGL R R T S K Q 0 1 0 1 0 0 1 0 0 2 1 1 0 0 0 3 1 0 0 0 0 0 11 1 1247.6721 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 107 117 SEPT9 Septin-9 yes no 2;3 1.1417E-14 185.29 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 1 1 1.2235 1.2305 8.5927 10 Median 1.1805 1.2096 NaN 1 0 Median 1.3834 1.2664 NaN 1 0 Median 1.0817 1.1772 4.1859 3 1 Median 1.3653 1.2518 12.801 3 0 Median 1.268 1.3945 NaN 1 0 Median 1.4923 1.2969 NaN 1 1 Median 180210000 79779000 100430000 2859100 1177100 1682000 4158800 1519200 2639500 103660000 48185000 55476000 62363000 25744000 36618000 4818700 2185700 2633000 2353700 967540 1386100 29092 4276 30590 152394;152395;152396;152397;152398;152399;152400;152401;152402;152403 153259;153260;153261;153262;153263;153264;153265;153266;153267;153268;153269;153270;153271;153272;153273;153274;153275;153276;153277;153278 153261 20 RTEMENEFVLIK LVEDFKNKYEDEINKRTEMENEFVLIKKDV INKRTEMENEFVLIKKDVDEAYMNKVELES K R T I K K 0 1 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 1 1507.7705 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 P05787 186 197 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.00014935 65.563 By MS/MS By matching 2 1 1.0831 1.108 18.436 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95461 1.0162 25.099 2 0 Median 1.1807 1.108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12213000 5829700 6383200 0 0 0 0 0 0 11725000 5601000 6124500 487380 228690 258690 0 0 0 0 0 0 + 29093 750 30591 152404;152405;152406 153279;153280;153281 153279 3 RTEMENEFVLIKK LVEDFKNKYEDEINKRTEMENEFVLIKKDV NKRTEMENEFVLIKKDVDEAYMNKVELESR K R T K K D 0 1 1 0 0 0 3 0 0 1 1 2 1 1 0 0 1 0 0 1 0 0 13 2 1635.8654 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 P05787 186 198 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.00012 75.462 By MS/MS By MS/MS By MS/MS 1 1 1 1.0504 1.1737 29.207 3 Median 1.0504 1.1737 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0406 1.1361 NaN 1 0 Median 1.6728 1.9136 NaN 1 1 Median NaN NaN NaN 0 0 Median 54950000 23129000 31821000 7307400 3764400 3543000 0 0 0 0 0 0 16471000 7743700 8727200 31172000 11621000 19551000 0 0 0 + 29094 750 30592 152407;152408;152409 153282;153283;153284 153284 3 RTEQEEDEELLTESSK DEKQNLLSVGDYRHRRTEQEEDEELLTESS TEQEEDEELLTESSKATNVCTRFEDSPSYV R R T S K A 0 1 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 16 1 1921.8753 O60264 O60264 145 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 2.9457E-05 66.335 By MS/MS 1 0.82502 0.90765 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82502 0.90765 NaN 1 0 Median NaN NaN NaN 0 0 Median 4627200 2316000 2311200 0 0 0 0 0 0 0 0 0 0 0 0 4627200 2316000 2311200 0 0 0 29095 1608 30593 152410 153285 153285 1 RTFPVLLR PEGGQGAPPMYQLYKRTFPVLLRLACDVDQ PMYQLYKRTFPVLLRLACDVDQVTRQLYEP K R T L R L 0 2 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 8 1 1000.6182 P78527 P78527 964 971 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0019989 145.34 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1.1829 1.1086 21.909 9 Median 0.87162 0.93963 6.1758 2 0 Median 1.209 1.1762 8.3636 2 0 Median 0.7208 0.8493 5.8323 2 0 Median 1.3662 1.2551 5.6388 2 0 Median NaN NaN NaN 0 0 Median 1.7685 1.5987 NaN 1 0 Median 129080000 67909000 61168000 33534000 17548000 15986000 12990000 5895600 7094500 77437000 42338000 35099000 4677200 1956000 2721200 0 0 0 439660 171960 267700 29096 2647 30594 152411;152412;152413;152414;152415;152416;152417;152418;152419 153286;153287;153288;153289;153290 153288 5 RTGAIVDVPVGEELLGR VFGNDKLIKEGDIVKRTGAIVDVPVGEELL GAIVDVPVGEELLGRVVDALGNAIDGKGPI K R T G R V 1 2 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 17 1 1779.9843 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 133 149 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.060137 22.232 By MS/MS 1 0.90995 0.91891 NaN 1 Median 0.90995 0.91891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2973700 1341700 1632100 2973700 1341700 1632100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29097 2135 30595 152420 153291 153291 1 RTGIPTLGK SMLPATPWGVWEIIKRTGIPTLGKNVVVAG VWEIIKRTGIPTLGKNVVVAGRSKNVGMPI K R T G K N 0 1 0 0 0 0 0 2 0 1 1 1 0 0 1 0 2 0 0 0 0 0 9 1 941.56581 P13995;B8ZZU9 P13995 186 194 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes no 2 0.026325 49.418 By MS/MS 1 0.20945 0.19766 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20945 0.19766 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3402500 2632300 770210 0 0 0 0 0 0 0 0 0 3402500 2632300 770210 0 0 0 0 0 0 29098 2000 30596 152421 153292 153292 1 RTGLGLASLPGPVK TPTPSAGKRSLLISRRTGLGLASLPGPVKS RRTGLGLASLPGPVKSYSHAKQLPVAHRPS R R T V K S 1 1 0 0 0 0 0 3 0 0 3 1 0 0 2 1 1 0 0 1 0 0 14 1 1364.814 Q8IWZ8;V9GZ08;B4DVK3 Q8IWZ8 131 144 SUGP1 SURP and G-patch domain-containing protein 1 yes no 3 0.038942 21.831 By MS/MS By matching 1 1 0.71145 0.77259 15.753 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65106 0.69115 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77744 0.86362 NaN 1 0 Median NaN NaN NaN 0 0 Median 4698400 2610500 2087900 0 0 0 0 0 0 3520100 1986600 1533400 0 0 0 1178300 623840 554450 0 0 0 29099 3330 30597 152422;152423 153293 153293 0 RTHLASDDLYK IELEEMGPSLDLVLRRTHLASDDLYKLSMK LVLRRTHLASDDLYKLSMKMPKALKPKKKK R R T Y K L 1 1 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 11 1 1317.6677 Q9H7B2;Q5VXN0 Q9H7B2 227 237 RPF2 Ribosome production factor 2 homolog yes no 2;3 6.0425E-05 73.466 By MS/MS 2 1.0027 1.0878 9.5993 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0027 1.0878 9.5993 2 0 Median NaN NaN NaN 0 0 Median 11552000 5236900 6315000 0 0 0 0 0 0 0 0 0 0 0 0 11552000 5236900 6315000 0 0 0 29100 3980 30598 152424;152425 153294;153295;153296 153294 3 RTIAQDYGVLK GGLGPMNIPLVSDPKRTIAQDYGVLKADEG SDPKRTIAQDYGVLKADEGISFRGLFIIDD K R T L K A 1 1 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1262.6983 Q06830;A0A0A0MSI0 Q06830 110 120 PRDX1 Peroxiredoxin-1 yes no 2;3 4.6202E-05 91.658 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.2193 1.1964 29.83 6 Median 1.3791 1.4347 1.7963 2 0 Median 1.0793 0.9991 1.5982 2 0 Median 1.8265 1.8901 NaN 1 0 Median 0.97412 0.8623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123040000 49334000 73702000 101270000 39634000 61637000 16759000 7921800 8837000 4228500 1380600 2847900 777420 396930 380490 0 0 0 0 0 0 29101 2728 30599 152426;152427;152428;152429;152430;152431;152432 153297;153298;153299;153300;153301;153302;153303;153304 153299 7 RTLALQQQLQAVR SARERLEQELALEERRTLALQQQLQAVRQA ERRTLALQQQLQAVRQALTASFASLPVPGT R R T V R Q 2 2 0 0 0 4 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 13 1 1523.8896 Q9P0W2;B5MDG7;K7EJR8 Q9P0W2 244 256 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 3 0.00025063 60.157 By MS/MS By matching 1 1 1.2557 1.2036 31.619 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92211 0.96245 NaN 1 0 Median 1.7098 1.5051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5373400 2547600 2825700 0 0 0 0 0 0 3965000 2008000 1957100 1408400 539670 868680 0 0 0 0 0 0 29102 4210 30600 152433;152434 153305;153306 153306 2 RTLEGELHDLR LNSKEAALSTALSEKRTLEGELHDLRGQVA LSEKRTLEGELHDLRGQVAKLEAALGEAKK K R T L R G 0 2 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 11 1 1337.7052 P02545;H0YAB0;Q3BDU5 P02545 156 166 LMNA Prelamin-A/C;Lamin-A/C no no 3 7.4161E-05 83.137 By MS/MS By MS/MS By MS/MS 2 2 1 1.17 1.2505 25.887 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1127 1.2152 4.0474 2 0 Median 1.9535 1.8212 3.5319 2 0 Median 0.96447 1.0419 NaN 1 1 Median NaN NaN NaN 0 0 Median 30159000 13218000 16940000 0 0 0 0 0 0 10402000 5486600 4915900 11255000 3987200 7267300 8501500 3744500 4757000 0 0 0 29103 1834;3010 30601 152435;152436;152437;152438;152439 153307;153308;153309;153310;153311;153312 153307 6 RTLTGTAALTVQSQEDNLR RTKHLHLRCSVDFTRRTLTGTAALTVQSQE GTAALTVQSQEDNLRSLVLDTKDLTIEKVV R R T L R S 2 2 1 1 0 2 1 1 0 0 3 0 0 0 0 1 4 0 0 1 0 0 19 1 2073.0814 P09960;B4DEH5 P09960 33 51 LTA4H Leukotriene A-4 hydrolase yes no 3 6.2722E-12 98.169 By MS/MS By matching By matching 1 1 1 0.75219 0.7353 39.873 3 Plateau 0.80255 0.79069 NaN 1 0 Median 0.46125 0.41891 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42784 0.37911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13513000 6859900 6653100 11445000 5637300 5807800 1720300 990310 730010 0 0 0 347510 232290 115220 0 0 0 0 0 0 29104 1924 30602 152440;152441;152442 153313 153313 1 RTMLLLSR MGFTEVTPVTGASLRRTMLLLSRSPEAQPK VTGASLRRTMLLLSRSPEAQPKTLPLTGST R R T S R S 0 2 0 0 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 0 0 0 8 1 988.58517 P55265 P55265 817 824 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.031412 45.161 By MS/MS 2 1.0297 1.1163 5.145 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0297 1.1163 5.145 2 0 Median NaN NaN NaN 0 0 Median 5236300 2555800 2680500 0 0 0 0 0 0 0 0 0 0 0 0 5236300 2555800 2680500 0 0 0 29105 2498 30603 152443;152444 153314 153314 1 RTMMEDFRK RLSQSKASKELVERRRTMMEDFRKYRKMAQ ELVERRRTMMEDFRKYRKMAQELYMEQKNE R R T R K Y 0 2 0 1 0 0 1 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 9 2 1212.5743 P55884 P55884 751 759 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 3 0.044426 57.348 By MS/MS 1 1.527 1.6562 NaN 1 Median NaN NaN NaN 0 0 Median 1.527 1.6562 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2342000 1041900 1300100 0 0 0 2342000 1041900 1300100 0 0 0 0 0 0 0 0 0 0 0 0 29106 2504 30604 152445 153315 153315 1 RTMTNALR TGRIKAIQLEYSEARRTMTNALRKAPQHTA LEYSEARRTMTNALRKAPQHTAVGFKQTVH R R T L R K 1 2 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 8 1 961.51273 O43242 O43242 307 314 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.035039 43.246 By MS/MS 1 0.96634 0.87764 NaN 1 Median NaN NaN NaN 0 0 Median 0.96634 0.87764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1357200 735450 621760 0 0 0 1357200 735450 621760 0 0 0 0 0 0 0 0 0 0 0 0 29107 1560 30605 152446 153316;153317 153316 2 RTNAENEFVTIK MVEDYRNKYEDEINKRTNAENEFVTIKKDV INKRTNAENEFVTIKKDVDGAYMTKVDLQA K R T I K K 1 1 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 1 1420.731 P04264;CON__P04264 P04264 277 288 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.0085297 45.115 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1348800 1348800 0 0 0 0 0 0 0 0 0 0 1348800 1348800 0 0 0 0 0 0 0 + 29108 1848 30606 152447 153318 153318 1 RTNAENEFVTIKK MVEDYRNKYEDEINKRTNAENEFVTIKKDV NKRTNAENEFVTIKKDVDGAYMTKVDLQAK K R T K K D 1 1 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 13 2 1548.826 P04264;CON__P04264 P04264 277 289 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.0027813 74.475 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.035063 0.037246 59.599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.048288 0.056768 NaN 1 1 Median 0.02546 0.024437 NaN 1 1 Median 12035000 11862000 172930 0 0 0 1429700 1429700 0 0 0 0 2716900 2716900 0 4937800 4825800 111990 2950700 2889800 60939 + 29109 1848 30607 152448;152449;152450;152451;152452 153319;153320;153321;153322;153323 153319 5 RTNIIPVLEDAR FSHRAGRDLVNVAKKRTNIIPVLEDARHPL AKKRTNIIPVLEDARHPLKYRMLIGMVDVI K R T A R H 1 2 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 1 1395.7834 A6NHQ2 A6NHQ2 219 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 3 0.062443 20.096 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29110 517 30608 152453 153324 153324 1 RTNSTFNQVVLK IYLRLLVKLYRFLARRTNSTFNQVVLKRLF LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R R T L K R 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0 J3QQ67 40 51 RPL18 60S ribosomal protein L18 yes no 2;3 5.5125E-06 118.4 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 1 1.1631 1.2313 20.663 9 Median 1.1821 1.2342 0.27279 2 0 Median 0.90427 0.84135 20.846 2 0 Median 1.0934 1.1322 12.004 2 0 Median NaN NaN NaN 0 0 Median 1.0804 1.145 10.274 2 0 Median 1.6982 1.5104 NaN 1 0 Median 83029000 37792000 45237000 34701000 15755000 18946000 7282300 3546000 3736300 10620000 4787300 5832600 0 0 0 28507000 13145000 15362000 1919500 558680 1360800 29111 1342 30609 152454;152455;152456;152457;152458;152459;152460;152461;152462 153325;153326;153327;153328;153329;153330 153325 6 RTNSTFNQVVLKR IYLRLLVKLYRFLARRTNSTFNQVVLKRLF ARRTNSTFNQVVLKRLFMSRTNRPPLSLSR R R T K R L 0 2 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 13 2 1561.8689 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0 J3QQ67 40 52 RPL18 60S ribosomal protein L18 yes no 3 0.00028528 63.292 By MS/MS 1 1.2446 1.3331 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2446 1.3331 NaN 1 0 Median NaN NaN NaN 0 0 Median 21395000 11047000 10348000 0 0 0 0 0 0 0 0 0 0 0 0 21395000 11047000 10348000 0 0 0 29112 1342 30610 152463 153331 153331 1 RTPDGTENGDFLALDLGGTNFR THNNAVVKMLPSFVRRTPDGTENGDFLALD NGDFLALDLGGTNFRVLLVKIRSGKKRTVE R R T F R V 1 2 2 3 0 0 1 4 0 0 3 0 0 2 1 0 3 0 0 0 0 0 22 1 2365.1299 P19367 P19367 518 539 HK1 Hexokinase-1 yes yes 3 0.0063271 27.739 By MS/MS 1 1.0176 1.1306 NaN 1 Median 1.0176 1.1306 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2101800 925470 1176300 2101800 925470 1176300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29113 2064 30611 152464 153332 153332 1 RTPFGAYGGLLK ______________________________ AAKRTPFGAYGGLLKDFTATDLSEFAAKAA K R T L K D 1 1 0 0 0 0 0 3 0 0 2 1 0 1 1 0 1 0 1 0 0 0 12 1 1278.7085 A0A0B4J2A4;P42765 A0A0B4J2A4 11 22 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.020716 35.224 By MS/MS By matching 1 1 1.0112 1.0114 13.611 2 Median 0.85734 0.91863 NaN 1 0 Median 1.1926 1.1136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10920000 7231200 3688500 10590000 7063800 3526200 329780 167420 162360 0 0 0 0 0 0 0 0 0 0 0 0 29114 220 30612 152465;152466 153333 153333 1 RTPGRPTSSQSYEQNIK AEHPLQYNYTFWYSRRTPGRPTSSQSYEQN PGRPTSSQSYEQNIKQIGTFASVEQFWRFY R R T I K Q 0 2 1 0 0 2 1 1 0 1 0 1 0 0 2 3 2 0 1 0 0 0 17 2 1947.9763 O60573;C9JEL3;B9A044;B8ZZ50 O60573 67 83 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 3 0.064576 10.099 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.93001 1 22.577 5 Median 0.67205 0.70436 NaN 1 0 Median 0.93001 1.0911 NaN 1 0 Median 0.662 0.77742 NaN 1 0 Median 0.97755 1 NaN 1 0 Median 1.1181 1.1975 NaN 1 0 Median NaN NaN NaN 0 0 Median 8479000 4332500 4146500 4092400 2309800 1782600 1714000 704550 1009500 708850 414510 294330 1259800 619750 640030 703940 283930 420020 0 0 0 29115 1622 30613 152467;152468;152469;152470;152471 153334 153334 1 RTPITVVK SAKRYIETDPANRDRRTPITVVKQGFEPPS DPANRDRRTPITVVKQGFEPPSFVGWFLGW R R T V K Q 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 2 0 0 2 0 0 8 1 912.57565 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14 A0A0A0MS51 707 714 GSN Gelsolin yes no 2 0.040994 45.081 By MS/MS By MS/MS By matching 1 1 1 0.882 0.8886 24.817 3 Plateau 0.71611 0.72801 NaN 1 0 Median 1.0863 1.0846 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.7024 0.68787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4142300 1953000 2189300 1125800 631970 493810 2905800 1255800 1650000 0 0 0 110740 65236 45499 0 0 0 0 0 0 + 29116 176 30614 152472;152473;152474 153335;153336 153335 2 RTPVIDADKPVSSQLR DIHYGVKSNSLAFIKRTPVIDADKPVSSQL TPVIDADKPVSSQLRVLTLSEDSPYETLHS K R T L R V 1 2 0 2 0 1 0 0 0 1 1 1 0 0 2 2 1 0 0 2 0 0 16 2 1780.9795 Q14204 Q14204 121 136 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 4.5171E-07 90.706 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 0.68042 0.67856 14.575 6 Median 0.63395 0.62895 7.0562 2 0 Median 0.87691 0.84562 NaN 1 0 Median 0.67556 0.76855 NaN 1 0 Median 0.62891 0.63454 13.168 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75365000 43574000 31791000 28818000 17333000 11485000 20987000 11517000 9469400 20907000 11885000 9022300 4653300 2839100 1814100 0 0 0 0 0 0 29117 2865 30615 152475;152476;152477;152478;152479;152480 153337;153338;153339;153340;153341;153342;153343;153344 153341 8 RTPVQPNPIVYMMK MPDSWDKDVYPEPPRRTPVQPNPIVYMMKA RRTPVQPNPIVYMMKAFDLIVDRPVTLVRE R R T M K A 0 1 1 0 0 1 0 0 0 1 0 1 2 0 3 0 1 0 1 2 0 0 14 1 1672.8793 O96000;H3BPJ9;H3BV16 O96000 16 29 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 2 0.020095 43.68 By MS/MS 1 0.89405 0.93296 NaN 1 Median 0.89405 0.93296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16620000 9743100 6877100 16620000 9743100 6877100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29118 1223 30616 152481 153345 153345 1 RTQEVLQAVAEK QEVEGGVPDIEEQERRTQEVLQAVAEKVKE QERRTQEVLQAVAEKVKEESQLPGTGGPED R R T E K V 2 1 0 0 0 2 2 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 12 1 1370.7518 Q02952 Q02952 1038 1049 AKAP12 A-kinase anchor protein 12 yes yes 2;3 6.5209E-06 103.08 By MS/MS By MS/MS 3 4 1.2929 1.2314 26.101 7 Median 1.5894 1.6426 34.215 3 0 Plateau 1.1348 1.0657 19.981 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45209000 20435000 24774000 13874000 5652700 8221600 31335000 14783000 16552000 0 0 0 0 0 0 0 0 0 0 0 0 29119 2705 30617 152482;152483;152484;152485;152486;152487;152488 153346;153347;153348;153349;153350;153351;153352;153353;153354;153355;153356;153357 153352 12 RTSSAQVEGGVHSLHSYEK QVRAMMYSGELKFEKRTSSAQVEGGVHSLH AQVEGGVHSLHSYEKRLF____________ K R T E K R 1 1 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 19 1 2071.0083 P12268;H0Y4R1 P12268 493 511 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 4 0.00049053 31.625 By MS/MS By MS/MS 1 1 1.349 1.2885 16.332 2 Median 1.1499 1.148 NaN 1 0 Median 1.5826 1.4462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7538000 3442600 4095500 5624800 2586900 3037900 1913200 855660 1057600 0 0 0 0 0 0 0 0 0 0 0 0 29120 1148 30618 152489;152490 153358;153359;153360 153359 3 RTTQIINITMTK DVFLDSGRKTRSARRRTTQIINITMTKKLD ARRRTTQIINITMTKKLDVEEPDSANSSFY R R T T K K 0 1 1 0 0 1 0 0 0 3 0 1 1 0 0 0 4 0 0 0 0 0 12 1 1418.7915 A0A087WY61;Q14980 Q14980 1810 1821 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.0092089 40.552 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29121 2905;77 30619 152491 153361 153361 1 RTTTGDVQVLGLVHTQK YKGPLGCSERASICRRTTTGDVQVLGLVHT TTGDVQVLGLVHTQKLGVIGDKVVVTYSKG R R T Q K L 0 1 0 1 0 2 0 2 1 0 2 1 0 0 0 0 4 0 0 3 0 0 17 1 1852.0167 P11717;S4R328 P11717 2048 2064 IGF2R Cation-independent mannose-6-phosphate receptor yes no 3 4.7572E-05 47.68 By matching By MS/MS 1 1 1.0856 1.06 22.556 2 Median 0.87846 0.90374 NaN 1 0 Median 1.3417 1.2433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15242000 7416900 7825400 4440500 2618500 1822000 10802000 4798500 6003300 0 0 0 0 0 0 0 0 0 0 0 0 29122 1969 30620 152492;152493 153362 153362 1 RTTVVAQLK KNLYSDDIPHALREKRTTVVAQLKQLQAET HALREKRTTVVAQLKQLQAETEPIVKMFED K R T L K Q 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 9 1 1014.6186 P60228;H0YBR5;E5RIT4 P60228 74 82 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.014742 48.283 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.1756 1.0882 16.733 6 Median 1.038 1.0367 NaN 1 0 Median 1.1756 1.0882 4.8135 2 0 Median 1.233 1.2483 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3067 1.3495 NaN 1 0 Median 0.90806 0.83454 NaN 1 0 Median 14170000 6373300 7796300 4583200 2200100 2383100 7154800 3141000 4013800 1469500 631300 838220 0 0 0 368830 149870 218960 593250 251020 342220 29123 2524 30621 152494;152495;152496;152497;152498;152499 153363;153364;153365;153366;153367 153365 5 RTTYLVLDEADR GRLIDFLECGKTNLRRTTYLVLDEADRMLD NLRRTTYLVLDEADRMLDMGFEPQIRKIVD R R T D R M 1 2 0 2 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 12 1 1450.7416 J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 241 252 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.00031253 54.524 By MS/MS By matching 1 1 1.2919 1.3174 14.844 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0629 1.1861 NaN 1 0 Median 1.5703 1.4632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10536000 5150300 5385500 0 0 0 0 0 0 9896300 4930200 4966100 639490 220130 419360 0 0 0 0 0 0 29124 1334 30622 152500;152501 153368;153369 153369 2 RTVEGVLIVHEHR RFQRMREEFDKIGMRRTVEGVLIVHEHRLP MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK R R T H R L 0 2 0 0 0 0 2 1 2 1 1 0 0 0 0 0 1 0 0 3 0 0 13 1 1543.8583 O43809;H3BND3;H3BV41 O43809 78 90 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 3 0.00025863 59.607 By MS/MS By MS/MS 1 1 1.0238 0.98649 32.626 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75542 0.78325 NaN 1 0 Median 1.3876 1.2425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6192000 3383000 2809100 0 0 0 0 0 0 4704400 2761200 1943200 1487600 621720 865880 0 0 0 0 0 0 29125 1592 30623 152502;152503 153370;153371 153371 2 RTVENIKDPLFR SNWLHLIPQTLSHLKRTVENIKDPLFRFFE HLKRTVENIKDPLFRFFEREVKMGAKLLQD K R T F R F 0 2 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 12 2 1486.8256 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4400 4411 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.001873 40.287 By matching By matching By MS/MS 1 1 1 0.83869 0.95413 94.163 3 Median 1.4038 1.3542 NaN 1 0 Median 0.22199 0.22892 NaN 1 0 Median 0.83869 0.95413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9829400 5267400 4562000 3987200 1670600 2316600 1291900 975370 316480 4550300 2621400 1929000 0 0 0 0 0 0 0 0 0 29126 2865 30624 152504;152505;152506 153372 153372 1 RTVFKTENSILR HNPGNLGGTMRLGIRRTVFKTENSILRKLY GIRRTVFKTENSILRKLYGDVPFIEERHRH R R T L R K 0 2 1 0 0 0 1 0 0 1 1 1 0 1 0 1 2 0 0 1 0 0 12 2 1462.8256 Q9NRF8 Q9NRF8 454 465 CTPS2 CTP synthase 2 yes yes 3 0.030564 22.198 By matching By MS/MS By matching 1 5 3 0.97466 1.1608 18.359 9 Median NaN NaN NaN 0 0 Median 1.3667 1.5128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91674 1.0457 9.9387 5 0 Median 1.5242 1.4357 12.028 3 0 Median 38598000 18556000 20042000 0 0 0 379580 170690 208890 0 0 0 0 0 0 27100000 13851000 13249000 11118000 4534400 6583400 29127 4080 30625 152507;152508;152509;152510;152511;152512;152513;152514;152515 153373 153373 1 RTVIIHDRPDITHPR RESDRREVRGERDERRTVIIHDRPDITHPR RTVIIHDRPDITHPRHPREAGPNPSRPTSW R R T P R H 0 3 0 2 0 0 0 0 2 3 0 0 0 0 2 0 2 0 0 1 0 0 15 2 1825.0071 Q9NWH9;H7C3F4 Q9NWH9 854 868 SLTM SAFB-like transcription modulator yes no 4 0.0067007 26.148 By MS/MS 1 0.87282 0.85815 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87282 0.85815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 679240 338880 340360 0 0 0 0 0 0 0 0 0 679240 338880 340360 0 0 0 0 0 0 29128 4149 30626 152516 153374 153374 1 RTVQSLEIDLDSMR SAEVGAAETTLTELRRTVQSLEIDLDSMRN RRTVQSLEIDLDSMRNLKASLENSLREVEA R R T M R N 0 2 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 14 1 1661.8407 P05783;F8VZY9 P05783 301 314 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.00016997 63.128 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.1625 1.1487 22.118 6 Median 1.2638 1.2762 NaN 1 0 Median 1.1891 1.0724 NaN 1 0 Median 1.1365 1.2306 NaN 1 0 Median 0.9735 0.90805 NaN 1 0 Median 1.5126 1.6185 NaN 1 0 Median 1.036 0.91594 NaN 1 0 Median 15325000 7164800 8160000 1397000 636210 760840 476330 216290 260040 7398300 3727600 3670700 3064300 1259000 1805300 2750600 1212200 1538400 238220 113420 124790 29129 1869 30627 152517;152518;152519;152520;152521;152522 153375;153376 153375 2 RTYEEGLKHEANNPQLK KAAALEFLNRFEEAKRTYEEGLKHEANNPQ YEEGLKHEANNPQLKEGLQNMEARLAERKF K R T L K E 1 1 2 0 0 1 3 1 1 0 2 2 0 0 1 0 1 0 1 0 0 0 17 2 2026.0232 P31948;F5H783;F5GXD8 P31948 93 109 STIP1 Stress-induced-phosphoprotein 1 yes no 4 6.6481E-06 66.965 By MS/MS By MS/MS By matching 1 1 1 0.92638 0.94008 18.416 3 Plateau 1.0124 1.096 NaN 1 0 Median 0.84764 0.80634 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76757 0.78811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30753000 15466000 15287000 17668000 8480000 9188100 12357000 6580900 5775700 0 0 0 728220 405200 323020 0 0 0 0 0 0 29130 2212 30628 152523;152524;152525 153377;153378;153379;153380 153377 4 RVAAALPGMESTQDR ETSAKAGYNVKQLFRRVAAALPGMESTQDR RVAAALPGMESTQDRSREDMIDIKLEKPQE R R V D R S 3 2 0 1 0 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 15 1 1600.7991 P20340;F5H3K7 P20340 169 183 RAB6A Ras-related protein Rab-6A yes no 2;3 0.00012138 48.899 By MS/MS By matching 2 1 1.1359 0.96464 17.813 3 Median 1.0259 1.0966 22.913 2 0 Median 1.1359 0.96464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14518000 6794000 7724100 12555000 6117400 6437400 1963300 676590 1286700 0 0 0 0 0 0 0 0 0 0 0 0 29131 2079 30629 152526;152527;152528 153381;153382;153383 153381 3 RVAAMSVAQR SLPGPKRGVACTQPRRVAAMSVAQRVADEM CTQPRRVAAMSVAQRVADEMDVMLGQEVGY R R V Q R V 3 2 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 10 1 1087.592 O43143 O43143 195 204 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0054443 64.04 By matching By MS/MS By matching By MS/MS By matching 1 1 1 3 3 1.1255 1.154 12.246 9 Median 1.1255 1.154 NaN 1 0 Median 1.1998 1.1871 NaN 1 1 Median 0.91179 1.0536 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0815 1.2119 5.8047 3 0 Median 1.1272 0.99658 12.432 3 0 Median 24628000 11413000 13215000 2749300 1297800 1451500 7982200 3664400 4317800 1565200 802320 762850 0 0 0 9929000 4512600 5416400 2402400 1136400 1266100 29132 1553 30630 152529;152530;152531;152532;152533;152534;152535;152536;152537 153384;153385;153386 153386 3 RVAEELALEQAK SGAYGASVSDEELKRRVAEELALEQAKKES LKRRVAEELALEQAKKESEDQKRLKQAKEL R R V A K K 3 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1355.7409 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 65 76 CHCHD3 MICOS complex subunit MIC19 yes no 2;3 2.8171E-06 114.89 By MS/MS By MS/MS 2 2 0.8264 0.86846 19.975 3 Median 0.9158 0.96314 14.633 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81119 0.71642 NaN 1 0 Median 12081000 6038700 6042800 6574700 3639200 2935600 0 0 0 0 0 0 0 0 0 0 0 0 5506700 2399500 3107200 29133 720 30631 152538;152539;152540;152541 153387;153388;153389;153390;153391 153387 5 RVAEELALEQAKK SGAYGASVSDEELKRRVAEELALEQAKKES KRRVAEELALEQAKKESEDQKRLKQAKELD R R V K K E 3 1 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 13 2 1483.8358 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 65 77 CHCHD3 MICOS complex subunit MIC19 yes no 3 0.00030412 62.162 By MS/MS By MS/MS 1 1 3.1657 3.0418 30.461 2 Median 2.3031 2.4523 NaN 1 0 Median 4.3514 3.7728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13177000 3361100 9815700 9108600 2624200 6484400 4068300 736990 3331300 0 0 0 0 0 0 0 0 0 0 0 0 29134 720 30632 152542;152543 153392;153393 153392 2 RVAIFIEK ARAQRIEYDCELVPRRVAIFIEKTKDGQIL DCELVPRRVAIFIEKTKDGQILPVPNVVVR R R V E K T 1 1 0 0 0 0 1 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 8 1 974.5913 Q9P258 Q9P258 311 318 RCC2 Protein RCC2 yes yes 2 0.0042604 133.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 5 1 3 1.047 1.0296 10.804 18 Median 1.1009 1.1037 13.027 2 0 Median 1.1709 1.0697 2.3093 2 0 Median 0.92576 0.98235 11.253 5 0 Median 1.1175 0.98923 6.2045 5 0 Median 1.043 1.0738 NaN 1 0 Median 1.1416 1.017 20.75 3 0 Median 215830000 102030000 113800000 14374000 6756100 7618100 13100000 6022500 7077900 62858000 30237000 32621000 96597000 46254000 50342000 6094800 2943000 3151800 22807000 9819100 12988000 29135 4214 30633 152544;152545;152546;152547;152548;152549;152550;152551;152552;152553;152554;152555;152556;152557;152558;152559;152560;152561 153394;153395;153396;153397;153398;153399;153400;153401;153402;153403;153404;153405;153406;153407;153408;153409;153410;153411;153412;153413;153414;153415 153407 22 RVALVTFNSAAHNKPSLIR GDFLKTLEDPDLNVRRVALVTFNSAAHNKP VTFNSAAHNKPSLIRDLLDTVLPHLYNETK R R V I R D 3 2 2 0 0 0 0 0 1 1 2 1 0 1 1 2 1 0 0 2 0 0 19 2 2093.1858 Q86VP6;A0A0C4DGH5 Q86VP6 1024 1042 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 4 0.00012879 50.883 By MS/MS 1 0.60026 0.67669 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60026 0.67669 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10695000 6608200 4086900 0 0 0 0 0 0 10695000 6608200 4086900 0 0 0 0 0 0 0 0 0 29136 3288 30634 152562 153416 153416 1 RVAMIDETR ETLRARFYAVQKLARRVAMIDETRNSLYQY VQKLARRVAMIDETRNSLYQYFLSYLQSLL R R V T R N 1 2 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 9 1 1089.5601 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 644 652 IMMT MICOS complex subunit MIC60 yes no 2 0.071689 39.022 By MS/MS 1 1.5338 1.3866 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5338 1.3866 NaN 1 1 Median 1112100 431510 680610 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1112100 431510 680610 29137 3001 30635 152563 153417 153417 1 RVAQDWLK ELAAKFVNQLKGESRRVAQDWLKEARMTLE QLKGESRRVAQDWLKEARMTLETKQIVEIL R R V L K E 1 1 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 1 1014.5611 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 719 726 IMMT MICOS complex subunit MIC60 yes no 2 0.0077113 75.854 By MS/MS By MS/MS By MS/MS 1 1 1 1.1217 1.1512 27.868 3 Median 1.1217 1.1512 NaN 1 0 Median 1.5592 1.5526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0274 0.88964 NaN 1 0 Median 16120000 6997600 9122900 7400200 3277500 4122700 5043800 1888800 3154900 0 0 0 0 0 0 0 0 0 3676400 1831300 1845200 29138 3001 30636 152564;152565;152566 153418;153419;153420;153421 153420 4 RVATWFNQPAR NGMVLKPHFHKDWQRRVATWFNQPARKIRR DWQRRVATWFNQPARKIRRRKARQAKARRI R R V A R K 2 2 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 11 1 1344.7051 P26373;J3QSB4;H3BTH3 P26373 21 31 RPL13 60S ribosomal protein L13 yes no 2;3 1.379E-52 237.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 1 0.92404 0.97687 53.851 12 Median 0.92404 0.99126 30.153 4 2 Median 0.57054 0.52194 94.228 3 1 Median 1.0246 1.0623 19.603 2 0 Median NaN NaN NaN 0 0 Median 0.89347 0.96898 10.571 2 0 Median 1.092 0.9728 NaN 1 0 Median 363470000 219510000 143960000 190560000 107320000 83243000 61388000 55960000 5427400 27629000 12287000 15342000 0 0 0 72475000 38446000 34028000 11417000 5499000 5918200 29139 2144 30637 152567;152568;152569;152570;152571;152572;152573;152574;152575;152576;152577;152578;152579 153422;153423;153424;153425;153426;153427;153428;153429;153430;153431;153432;153433;153434;153435;153436;153437;153438;153439;153440 153424 19 RVATWFNQPARK NGMVLKPHFHKDWQRRVATWFNQPARKIRR WQRRVATWFNQPARKIRRRKARQAKARRIA R R V R K I 2 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 12 2 1472.8001 P26373;J3QSB4;H3BTH3 P26373 21 32 RPL13 60S ribosomal protein L13 yes no 3 0.010338 27.681 By matching By MS/MS 1 1 0.9873 0.98331 18.856 2 Median NaN NaN NaN 0 0 Median 0.92922 0.86057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.049 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median 6098500 3137700 2960700 0 0 0 1654400 815510 838850 0 0 0 0 0 0 4444100 2322200 2121900 0 0 0 29140 2144 30638 152580;152581 153441 153441 1 RVCEEIAIIPSKK EKYYTRLGNDFHTNKRVCEEIAIIPSKKLR NKRVCEEIAIIPSKKLRNKIAGYVTHLMKR K R V K K L 1 1 0 0 1 0 2 0 0 3 0 2 0 0 1 1 0 0 0 1 0 0 13 2 1541.8599 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73 H3BNC9 482 494 RPS17 40S ribosomal protein S17 yes no 3 0.0008058 47.774 By MS/MS 1 0.94846 0.97048 NaN 1 Median NaN NaN NaN 0 0 Median 0.94846 0.97048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2222600 1053200 1169400 0 0 0 2222600 1053200 1169400 0 0 0 0 0 0 0 0 0 0 0 0 29141 1214 30639 152582 153442 153442 1 RVDALNDEIR LGTDLLSQLSLEDQKRVDALNDEIRQLQQE LEDQKRVDALNDEIRQLQQENRQLLNERIK K R V I R Q 1 2 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1199.6258 Q9UQE7 Q9UQE7 796 805 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.00031432 98.249 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 4 0.90416 0.96303 44.734 12 Median NaN NaN NaN 0 0 Median 1.0759 1.0373 33.072 2 1 Median 0.79489 0.96675 NaN 1 1 Median 0.9259 0.90645 NaN 1 1 Median 1.0126 1.0957 14.951 4 0 Linear 1.2728 1.1338 80.386 4 1 Median 52608000 26466000 26142000 0 0 0 4379900 2055000 2324900 11892000 6463900 5427900 898960 442770 456190 28121000 14304000 13817000 7316700 3201100 4115600 29142 4362 30640 152583;152584;152585;152586;152587;152588;152589;152590;152591;152592;152593;152594 153443;153444;153445;153446;153447;153448;153449;153450 153444 8 RVDATAGWSAAGK VREAADKEEPPSKKKRVDATAGWSAAGKSV KKRVDATAGWSAAGKSVPQDEVDEIEVYGS K R V G K S 4 1 0 1 0 0 0 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 13 1 1288.6524 Q10570 Q10570 423 435 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2;3 0.0005816 59.185 By MS/MS By MS/MS 3 1 0.7798 0.90139 30.273 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73637 0.85071 8.1833 2 1 Median 1.4744 1.4233 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4663600 2341900 2321700 0 0 0 0 0 0 3793900 2045700 1748200 869700 296200 573500 0 0 0 0 0 0 29143 2753 30641 152595;152596;152597;152598 153451;153452;153453;153454;153455 153454 5 RVDAVIPPYPR FFSEDKYYRVNLRTRRVDAVIPPYPRSIAQ LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA R R V P R S 1 2 0 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 1 2 0 0 11 1 1281.7194 CON__Q3ZBS7 CON__Q3ZBS7 459 469 yes yes 2;3 7.2151E-13 150.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 8 1 0.08262 0.070443 102.28 13 Median 0.061935 0.061794 145.92 2 2 Median 0.043781 0.037328 89.812 2 2 Median 0.09859 0.10707 76.66 3 3 Median NaN NaN NaN 0 0 Median 0.11498 0.12493 105.31 5 5 Median 0.01016 0.0095803 NaN 1 1 Median 156310000 148200000 8114300 21686000 20232000 1453600 44136000 41842000 2294100 19221000 18366000 855060 0 0 0 69523000 66018000 3504600 1747700 1740900 6845 + 29144 783 30642 152599;152600;152601;152602;152603;152604;152605;152606;152607;152608;152609;152610;152611;152612;152613;152614;152615 153456;153457;153458;153459;153460;153461;153462;153463;153464;153465;153466;153467;153468;153469;153470;153471;153472;153473;153474 153472 19 RVDGHTLASSNTDFAFSLYK VHCLPENVVVKDQHRRVDGHTLASSNTDFA TLASSNTDFAFSLYKQLPLKNPNKNVILSP R R V Y K Q 2 1 1 2 0 0 0 1 1 0 2 1 0 2 0 3 2 0 1 1 0 0 20 1 2228.0862 CON__Q9TTE1;CON__A2I7N0 CON__Q9TTE1 37 56 yes no 3 0.0025375 35.678 By MS/MS 1 0.25331 0.25524 NaN 1 Median 0.25331 0.25524 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3653300 3262000 391320 3653300 3262000 391320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 29145 794 30643 152616 153475 153475 1 RVDGLAFVNEDIVASK EVEFVFSEGSEASGRRVDGLAFVNEDIVAS VDGLAFVNEDIVASKGSGLGTICLWSWRQT R R V S K G 2 1 1 2 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 3 0 0 16 1 1731.9155 Q9UFC0;H7C5N7 Q9UFC0 499 514 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 3 3.1209E-05 53.773 By MS/MS 1 1.0137 1.1742 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0137 1.1742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6934700 3262800 3671900 0 0 0 0 0 0 6934700 3262800 3671900 0 0 0 0 0 0 0 0 0 29146 4258 30644 152617 153476;153477 153477 2 RVDIIPGFEFDR FLDFYLEYFPELKKKRVDIIPGFEFDRWLN KKKRVDIIPGFEFDRWLNTPGWPPYLPDLS K R V D R W 0 2 0 2 0 0 1 1 0 2 0 0 0 2 1 0 0 0 0 1 0 0 12 1 1462.7569 Q9H4A4;A6NKB8 Q9H4A4 470 481 RNPEP Aminopeptidase B yes no 2;3 0.007432 42.001 By MS/MS By matching 2 1 1.0638 1.0481 15.833 3 Median 0.95091 0.93687 15.869 2 1 Median 1.2517 1.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4656900 2229200 2427600 4185400 2017600 2167800 471430 211560 259870 0 0 0 0 0 0 0 0 0 0 0 0 29147 3964 30645 152618;152619;152620 153478;153479 153478 2 RVDPVYIHLAER VEIKFRRKDLVKTMRRVDPVYIHLAERLGT TMRRVDPVYIHLAERLGTPELSTAERKELE R R V E R L 1 2 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 2 0 0 12 1 1466.7994 Q13085;Q59FY4 Q13085 2139 2150 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 0.0001651 87.719 By MS/MS By MS/MS 1 1 1.918 2.0092 94.627 2 Median 3.61 3.923 NaN 1 1 Median 1.019 1.0291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58042000 11372000 46670000 54693000 9812500 44881000 3348200 1559600 1788600 0 0 0 0 0 0 0 0 0 0 0 0 29148 2784 30646 152621;152622 153480;153481 153481 2 RVEAAQETVADYQQTIKK EQLDMAGARVREAQKRVEAAQETVADYQQT AAQETVADYQQTIKKYRQLTAHLQDVNREL K R V K K Y 3 1 0 1 0 3 2 0 0 1 0 2 0 0 0 0 2 0 1 2 0 0 18 2 2077.0804 E7EX90;Q14203;Q6AWB1 E7EX90 485 502 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 3 3.0716E-12 108.71 By MS/MS By MS/MS 2 1 0.92764 1.0004 10.615 3 Median 0.93694 1.027 3.7208 2 0 Median NaN NaN NaN 0 0 Median 0.75426 0.85946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41184000 21202000 19982000 33124000 16827000 16297000 0 0 0 8060400 4375300 3685100 0 0 0 0 0 0 0 0 0 29149 906 30647 152623;152624;152625 153482;153483;153484;153485;153486;153487 153483 6 RVEDSSSNGQAHIHVVGVK FYKCLRTVFPNHTVKRVEDSSSNGQAHIHV SSSNGQAHIHVVGVKRRAIPLPIQMYYQQQ K R V V K R 1 1 1 1 0 1 1 2 2 1 0 1 0 0 0 3 0 0 0 4 0 0 19 1 2018.0293 Q68CP9;F8WCU9;F8W108 Q68CP9 582 600 ARID2 AT-rich interactive domain-containing protein 2 yes no 4 0.00047867 31.818 By MS/MS 1 0.81043 0.9644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81043 0.9644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2159200 1204400 954800 0 0 0 0 0 0 2159200 1204400 954800 0 0 0 0 0 0 0 0 0 29150 3122 30648 152626 153488 153488 1 RVEDVLGK IWAKQIDRQLTAYMKRVEDVLGKGWENHVE QLTAYMKRVEDVLGKGWENHVEGQKLKQDG K R V G K G 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 1 914.51853 Q14204 Q14204 664 671 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.010786 66.429 By MS/MS 1 1.1191 1.04 NaN 1 Median NaN NaN NaN 0 0 Median 1.1191 1.04 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7278800 3460300 3818600 0 0 0 7278800 3460300 3818600 0 0 0 0 0 0 0 0 0 0 0 0 29151 2865 30649 152627 153489;153490 153490 2 RVEDVLGKGWENHVEGQK IWAKQIDRQLTAYMKRVEDVLGKGWENHVE DVLGKGWENHVEGQKLKQDGDSFRMKLNTQ K R V Q K L 0 1 1 1 0 1 3 3 1 0 1 2 0 0 0 0 0 1 0 3 0 0 18 2 2079.0498 Q14204 Q14204 664 681 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 2.8611E-06 55.688 By MS/MS By MS/MS 1 2 0.92207 1.0034 24.589 3 Plateau 0.92207 1.0034 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70802 0.93956 34.356 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39452000 19562000 19890000 19574000 9828100 9745500 0 0 0 19879000 9734200 10144000 0 0 0 0 0 0 0 0 0 29152 2865 30650 152628;152629;152630 153491;153492;153493;153494 153493 3 RVEEDIQQQK KRLKNTLTQTTENLRRVEEDIQQQKATGSE TENLRRVEEDIQQQKATGSEVSQRKQQLEV R R V Q K A 0 1 0 1 0 3 2 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 10 1 1271.647 P15924 P15924 1425 1434 DSP Desmoplakin yes yes 2 0.041482 34.387 By matching By MS/MS 1 1 0.91025 0.91151 32.867 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64001 0.72249 NaN 1 0 Median 1.2946 1.15 NaN 1 0 Median 1285000 666710 618290 0 0 0 0 0 0 0 0 0 0 0 0 683570 415910 267660 601430 250800 350630 29153 2021 30651 152631;152632 153495 153495 1 RVEELVAK QQEIEEKLIEEETARRVEELVAKRVEEELE IEEETARRVEELVAKRVEEELEKRKDEIER R R V A K R 1 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 1 942.54983 Q9NWB6 Q9NWB6 133 140 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.0090656 71.501 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1 1.0741 1.0953 6.4959 10 Median 1.0462 1.1133 NaN 1 0 Median 1.0831 1.0109 NaN 1 0 Median 1.0069 1.0855 3.8968 3 0 Median 1.2442 1.0953 0 2 0 Median 1.0955 1.1669 10.774 2 0 Median 1.3551 1.2194 NaN 1 0 Median 23951000 11506000 12445000 115170 52987 62185 474550 214310 260230 10922000 5374600 5547900 1446400 612650 833750 8777100 4309400 4467700 2215600 942240 1273400 29154 4148 30652 152633;152634;152635;152636;152637;152638;152639;152640;152641;152642 153496;153497;153498;153499;153500 153497 5 RVEGIQYEDISK FSATIVIETGPLKGRRVEGIQYEDISKLA_ KGRRVEGIQYEDISKLA_____________ R R V S K L 0 1 0 1 0 1 2 1 0 2 0 1 0 0 0 1 0 0 1 1 0 0 12 1 1435.7307 O60870 O60870 380 391 KIN DNA/RNA-binding protein KIN17 yes yes 2 0.0027926 70.942 By MS/MS 1 1.1132 1.1267 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1132 1.1267 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4549700 2021100 2528600 0 0 0 0 0 0 4549700 2021100 2528600 0 0 0 0 0 0 0 0 0 29155 1636 30653 152643 153501 153501 1 RVEGPGSLGLEESGSR FRNMVQTAVVPVKKKRVEGPGSLGLEESGS VEGPGSLGLEESGSRRMQNFAFSGGLYGGL K R V S R R 0 2 0 0 0 0 3 4 0 0 2 0 0 0 1 3 0 0 0 1 0 0 16 1 1628.8118 Q12972;A0A0A0MT09 Q12972 237 252 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2 8.4664E-07 81.494 By MS/MS 2 0.6846 0.70167 14.03 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6846 0.70167 14.03 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27448000 14569000 12879000 0 0 0 0 0 0 27448000 14569000 12879000 0 0 0 0 0 0 0 0 0 29156 2775 30654 152644;152645 153502;153503 153502 2 RVEGPGSLGLEESGSRR FRNMVQTAVVPVKKKRVEGPGSLGLEESGS EGPGSLGLEESGSRRMQNFAFSGGLYGGLP K R V R R M 0 3 0 0 0 0 3 4 0 0 2 0 0 0 1 3 0 0 0 1 0 0 17 2 1784.9129 Q12972;A0A0A0MT09 Q12972 237 253 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 3 0.0020796 27.85 By matching By MS/MS By MS/MS 1 2 1 0.95391 1.0336 15.302 4 Median 0.95543 0.947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86887 1.0336 11.713 2 0 Median 1.1984 1.3044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11051000 5413800 5636900 1472800 798220 674600 0 0 0 6919500 3430600 3488900 2658400 1184900 1473400 0 0 0 0 0 0 29157 2775 30655 152646;152647;152648;152649 153504;153505;153506 153506 3 RVEHNQSYSQAGITETEWTSGSSK PLKGRAKTPVTLKQRRVEHNQSYSQAGITE QAGITETEWTSGSSKGGPLQALTRESTRGS R R V S K G 1 1 1 0 0 2 3 2 1 1 0 1 0 0 0 5 3 1 1 1 0 0 24 1 2681.2318 P42167 P42167 216 239 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 3;4 4.0058E-36 150.36 By MS/MS By MS/MS By MS/MS By MS/MS 8 8 6 5 1.1407 1.1582 21.434 27 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92873 1.0247 5.992 8 0 Median 1.4937 1.3398 15.669 8 0 Median 0.90135 0.91036 15.109 6 0 Median 1.3504 1.2093 16.238 5 0 Median 536720000 263620000 273110000 0 0 0 0 0 0 193760000 97431000 96331000 97608000 39485000 58122000 201000000 108070000 92926000 44357000 18628000 25729000 29158 2307 30656 152650;152651;152652;152653;152654;152655;152656;152657;152658;152659;152660;152661;152662;152663;152664;152665;152666;152667;152668;152669;152670;152671;152672;152673;152674;152675;152676 153507;153508;153509;153510;153511;153512;153513;153514;153515;153516;153517;153518;153519;153520;153521;153522;153523;153524;153525;153526;153527;153528;153529;153530;153531;153532;153533;153534;153535;153536;153537;153538;153539;153540;153541;153542;153543;153544;153545 153507 39 RVEILNEHRGEK IGCGRLNEPIKVLCRRVEILNEHRGEKLNR LCRRVEILNEHRGEKLNRVKMVEKEKDALE R R V E K L 0 2 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 12 2 1478.7954 Q9NTJ3;E9PD53;C9JR83 Q9NTJ3 273 284 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.074317 12.561 By MS/MS 1 0.98312 1.0031 NaN 1 Median 0.98312 1.0031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 972130 514390 457750 972130 514390 457750 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29159 4108 30657 152677 153546 153546 1 RVEILSEGNEVQFIQLAK TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ ILSEGNEVQFIQLAKDFEDFRKKWQRTDHE R R V A K D 1 1 1 0 0 2 3 1 0 2 2 1 0 1 0 1 0 0 0 2 0 0 18 1 2072.1266 Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8VVE5;F8W0L1;F8VZ66;F8VV47;F8VUW9;F8VV39;F8VS54 Q9H0H5 18 35 RACGAP1 Rac GTPase-activating protein 1 yes no 3 2.5412E-06 53.779 By MS/MS By matching 1 1 0.96778 0.89337 15.899 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75197 0.79837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2455 0.99967 NaN 1 0 Median 3929200 2016300 1912900 0 0 0 0 0 0 3329400 1762300 1567100 0 0 0 0 0 0 599820 254040 345790 29160 3926 30658 152678;152679 153547;153548 153548 2 RVEIMEEESEQ GGDWHIAYVLLYGPRRVEIMEEESEQ____ YGPRRVEIMEEESEQ_______________ R R V E Q - 0 1 0 0 0 1 5 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 11 1 1377.6082 A6NJA2;P54578 A6NJA2 438 448 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.00019007 112.71 By MS/MS By MS/MS By MS/MS By matching 4 3 1 1 1.0823 0.97927 51.36 9 Median 1.0123 0.96626 78.633 4 0 Median 1.1632 0.97927 3.8901 3 0 Median 0.98957 1.0278 NaN 1 0 Median 1.0439 0.90649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56652000 27408000 29244000 36548000 18090000 18457000 15513000 7349100 8163500 3984300 1680700 2303500 607800 287710 320090 0 0 0 0 0 0 29161 523 30659;30660 152680;152681;152682;152683;152684;152685;152686;152687;152688 153549;153550;153551;153552;153553;153554;153555;153556;153557;153558;153559;153560 153553 208 12 RVEIQMPK VPEVPTAPATDAAPKRVEIQMPKPAEAPTA ATDAAPKRVEIQMPKPAEAPTAPSPAQTLE K R V P K P 0 1 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 0 1 0 0 8 1 999.55354 Q9UHD8;K7EJ51;K7ERG1 Q9UHD8 187 194 SEPT9 Septin-9 yes no 2 0.027774 51.854 By MS/MS By MS/MS 1 2 1.1104 1.0181 14.673 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81176 0.86205 NaN 1 1 Median 1.1651 1.0844 8.9199 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17126000 9310800 7815400 0 0 0 0 0 0 8404600 5010600 3394000 8721600 4300200 4421400 0 0 0 0 0 0 29162 4276 30661 152689;152690;152691 153561;153562;153563 153562 3 RVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSR VPEVPTAPATDAAPKRVEIQMPKPAEAPTA LENSEPAPVSQLQSRLEPKPQPPVAEATPR K R V S R L 5 2 1 0 0 4 4 0 0 1 2 1 1 0 7 4 2 0 0 2 0 0 36 2 3853.9633 Q9UHD8;K7EJ51 Q9UHD8 187 222 SEPT9 Septin-9 yes no 4 7.4704E-64 121.93 By MS/MS By MS/MS 3 1 0.29793 0.33423 15.915 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.28337 0.3179 9.7331 3 3 Median 0.4601 0.41965 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48506000 41334000 7172000 0 0 0 0 0 0 45789000 39207000 6582000 2717000 2126900 590060 0 0 0 0 0 0 29163 4276 30662;30663 152692;152693;152694;152695 153564;153565;153566;153567;153568 153566 1915 5 RVELSGPK HVDSLSQRSPKASLRRVELSGPKAAEPVSR SPKASLRRVELSGPKAAEPVSRRTELSIDI R R V P K A 0 1 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 8 1 884.50797 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 92 99 SEPT9 Septin-9 yes no 2 0.0050387 89.698 By matching By matching By MS/MS By matching By matching 1 1 2 2 1 1.0235 1.0494 6.7573 7 Median 0.98703 1.0004 NaN 1 0 Median 1.1571 1.0701 NaN 1 0 Median 0.89767 0.96749 1.2447 2 0 Median 1.1553 1.0849 4.7079 2 0 Median 1.0235 1.142 NaN 1 0 Median NaN NaN NaN 0 0 Median 8222100 4059400 4162700 133780 68059 65723 786260 365950 420310 5968200 3040000 2928200 1056100 463910 592230 277760 121510 156250 0 0 0 29164 4276 30664 152696;152697;152698;152699;152700;152701;152702 153569 153569 1 RVENSIPAAGETQNVEVAAGPAGK KEWGDDEEEQPSKRRRVENSIPAAGETQNV GETQNVEVAAGPAGKCAAVDVEPPSKQKEK R R V G K C 5 1 2 0 0 1 3 3 0 1 0 1 0 0 2 1 1 0 0 3 0 0 24 1 2364.2034 A0A499FI31;Q15020 A0A499FI31 664 687 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 4.6722E-24 103.84 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.85331 0.833 9.7876 5 Median 0.68256 0.71165 NaN 1 0 Median 0.91492 0.8591 9.934 2 2 Median 0.73474 0.833 NaN 1 0 Median 0.9087 0.87327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48056000 26838000 21219000 17807000 10936000 6870800 8935300 4582200 4353200 15292000 8456600 6835600 6022000 2862800 3159300 0 0 0 0 0 0 29165 473 30665 152703;152704;152705;152706;152707 153570;153571;153572;153573;153574;153575;153576;153577 153577 8 RVEPGSPAEAAALR FHLHGEKGRRGQFIRRVEPGSPAEAAALRA RRVEPGSPAEAAALRAGDRLVEVNGVNVEG R R V L R A 4 2 0 0 0 0 2 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 14 1 1422.7579 Q15599 Q15599 38 51 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 yes yes 3 0.0029117 32.702 By matching By MS/MS By matching 1 1 1 0.59012 0.51947 41.152 3 Median 0.96995 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47266 0.48444 NaN 1 0 Median 0.59012 0.51947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9905900 6752200 3153700 1256700 698510 558170 0 0 0 6201400 4439400 1761900 2447800 1614200 833610 0 0 0 0 0 0 29166 2958 30666 152708;152709;152710 153578 153578 1 RVEPLRNELQK VKWAIAQLNYADMLKRVEPLRNELQKLEDD DMLKRVEPLRNELQKLEDDAKDNQQKANEV K R V Q K L 0 2 1 0 0 1 2 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 11 2 1380.7837 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3408 3418 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.00016186 68.548 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 2 0.9735 1.0117 16.497 10 Median 0.78396 0.75628 NaN 1 0 Median 1.0044 1.0506 19.874 2 0 Median 0.8427 0.98531 17.11 2 0 Median 1.0027 1.0117 3.7108 2 0 Median 1.2045 1.3219 NaN 1 0 Median 1.0786 0.97029 10.755 2 0 Median 31546000 15820000 15725000 4791400 2267300 2524000 10504000 5330600 5173800 7825600 4314500 3511100 5319200 2464900 2854300 1048100 369620 678490 2057100 1073400 983700 29167 2865 30667 152711;152712;152713;152714;152715;152716;152717;152718;152719;152720 153579;153580;153581;153582;153583;153584;153585;153586;153587;153588 153584 10 RVEQPLYGLDGSAAK ARSSPQHSLSNPLPRRVEQPLYGLDGSAAK RVEQPLYGLDGSAAKEATEEQSALPTLMSV R R V A K E 2 1 0 1 0 1 1 2 0 0 2 1 0 0 1 1 0 0 1 1 0 0 15 1 1602.8366 Q86UE8;J3KRK0;J3QS44 Q86UE8 123 137 TLK2 Serine/threonine-protein kinase tousled-like 2 yes no 2 0.045496 38.634 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29168 3277 30668 152721 153589 153589 1 RVFITDDFHDMMPK EYGSKKSDYIKLYVRRVFITDDFHDMMPKY RRVFITDDFHDMMPKYLNFVKGVVDSDDLP R R V P K Y 0 1 0 3 0 0 0 0 1 1 0 1 2 2 1 0 1 0 0 1 0 0 14 1 1750.8171 P14625 P14625 415 428 HSP90B1 Endoplasmin yes yes 2;3 0.00016649 69.108 By MS/MS By MS/MS By matching 7 3 1 0.96531 0.96834 19.718 11 Median 0.85476 0.89023 16.368 7 0 Median 1.246 1.2337 17.495 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8601 0.77753 NaN 1 0 Median 85109000 41049000 44060000 65618000 33064000 32554000 19221000 7857200 11364000 0 0 0 0 0 0 0 0 0 269620 127690 141930 29169 2006 30669;30670;30671 152722;152723;152724;152725;152726;152727;152728;152729;152730;152731;152732 153590;153591;153592;153593;153594;153595;153596;153597;153598 153591 795;796 9 RVFLQHMTR TFFPYSSNPANPKPKRVFLQHMTRTFHDLE ANPKPKRVFLQHMTRTFHDLEGNAVKRDSG K R V T R T 0 2 0 0 0 1 0 0 1 0 1 0 1 1 0 0 1 0 0 1 0 0 9 1 1186.6393 Q7Z2K6;E7ER77 Q7Z2K6 685 693 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 3 0.0012948 70.028 By MS/MS By MS/MS 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14264000 0 14264000 2650200 0 2650200 11613000 0 11613000 0 0 0 0 0 0 0 0 0 0 0 0 29170 883 30672 152733;152734;152735;152736 153599;153600;153601;153602 153601 4 RVFNPYTEFK ADLNQGIGEPQSPSRRVFNPYTEFKEFSRK QSPSRRVFNPYTEFKEFSRKQIKDMEKMFK R R V F K E 0 1 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 1 1 0 0 10 1 1299.6612 Q96C19 Q96C19 78 87 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.049497 42.599 By MS/MS 1 0.071168 0.07275 NaN 1 Median 0.071168 0.07275 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105510000 100880000 4629500 105510000 100880000 4629500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29171 3613 30673 152737 153603 153603 1 RVFQEFLK R V L K 0 1 0 0 0 1 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 1 1065.5971 REV__A0A0C4DG94 yes no 2 0.0050422 89.55 By MS/MS By MS/MS 4 2 1.0601 1.0602 8.7055 6 Median 1.0601 1.0602 3.2032 4 0 Linear 1.3317 1.212 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161530000 72223000 89303000 130960000 59542000 71414000 30570000 12681000 17889000 0 0 0 0 0 0 0 0 0 0 0 0 + 29172 4509 30674 152738;152739;152740;152741;152742;152743 153604;153605;153606;153607;153608 153607 5 RVFSSTLQNWQTTR RLAQVSPELLLASVRRVFSSTLQNWQTTRF RRVFSSTLQNWQTTRFMEVEVAIRLLYMLA R R V T R F 0 2 1 0 0 2 0 0 0 0 1 0 0 1 0 2 3 1 0 1 0 0 14 1 1722.8802 O43592 O43592 429 442 XPOT Exportin-T yes yes 3 0.0041905 29.013 By MS/MS 1 1.1706 1.3006 NaN 1 Median 1.1706 1.3006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5248400 1874700 3373700 5248400 1874700 3373700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29173 1576 30675 152744 153609 153609 1 RVGFQYEGTYK IYGSRGPTEADELMKRVGFQYEGTYKWVNP ELMKRVGFQYEGTYKWVNPHKL________ K R V Y K W 0 1 0 0 0 1 1 2 0 0 0 1 0 1 0 0 1 0 2 1 0 0 11 1 1346.6619 P11413 P11413 498 508 G6PD Glucose-6-phosphate 1-dehydrogenase yes yes 2 0.0011006 62.823 By matching By MS/MS 1 1 1.0315 0.98597 14.884 2 Median 1.0953 1.0954 NaN 1 0 Median 0.97136 0.88748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6007700 3010100 2997600 3570300 1773700 1796700 2437300 1236400 1200900 0 0 0 0 0 0 0 0 0 0 0 0 29174 1964 30676 152745;152746 153610;153611 153610 2 RVGFVGAGR GVRGNKMAAAEPSPRRVGFVGAGRMAGAIA AEPSPRRVGFVGAGRMAGAIAQGLIRAGKV R R V G R M 1 2 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 1 917.51953 A0A0A0MQS1;Q53H96;F8WEI0 A0A0A0MQS1 22 30 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 2 0.0091576 54.549 By MS/MS By matching 1 1 1.1521 1.1242 25.045 2 Median 0.88103 0.94176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5065 1.342 NaN 1 0 Median 2822200 1464300 1357800 2582300 1375400 1206900 0 0 0 0 0 0 0 0 0 0 0 0 239930 88958 150970 29175 146 30677 152747;152748 153612 153612 1 RVGGVQSLGGTGALR SRLALGDDSPALKEKRVGGVQSLGGTGALR RVGGVQSLGGTGALRIGADFLARWYNGTNN K R V L R I 1 2 0 0 0 1 0 5 0 0 2 0 0 0 0 1 1 0 0 2 0 0 15 1 1426.8005 P17174 P17174 100 114 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2;3 8.9572E-05 63.128 By MS/MS By matching By matching By matching 2 1 1 1 1.2398 1.3044 34.145 5 Median 1.2311 1.2953 0.99612 2 0 Median 1.5487 1.4463 NaN 1 0 Median 1.7125 1.7552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65244 0.70545 NaN 1 0 Median NaN NaN NaN 0 0 Median 25348000 12777000 12572000 10622000 4788600 5833600 1247400 477710 769720 1338000 605180 732860 0 0 0 12141000 6905200 5235600 0 0 0 29176 2038 30678 152749;152750;152751;152752;152753 153613;153614;153615;153616 153613 4 RVGIIAWHPTAR SPLTEPVVVLEGHTKRVGIIAWHPTARNVL HTKRVGIIAWHPTARNVLLSAGCDNVVLIW K R V A R N 2 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 1 1 0 1 0 0 12 1 1375.7837 Q9BR76;A0A087WW53;F5H390 Q9BR76 134 145 CORO1B Coronin-1B;Coronin yes no 3 0.0012751 41.242 By matching By MS/MS By matching 1 1 1 0.90259 0.97486 29.536 3 Median 0.815 0.82302 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90259 0.97486 NaN 1 0 Median 1.5893 1.4623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4933200 2431000 2502200 2323600 1269100 1054500 0 0 0 1732000 896210 835770 877610 265680 611930 0 0 0 0 0 0 29177 3792 30679 152754;152755;152756 153617 153617 1 RVGIVAWHPTAR LSLTEPVVILEGHSKRVGIVAWHPTARNVL HSKRVGIVAWHPTARNVLLSAGCDNAIIIW K R V A R N 2 2 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 2 0 0 12 1 1361.768 Q9ULV4;B4E3S0;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;F8VV53 Q9ULV4 132 143 CORO1C Coronin-1C;Coronin yes no 3 3.8931E-05 87.026 By MS/MS By MS/MS 2 1 1.0472 0.97678 33.39 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6838 0.72451 40.432 2 0 Median 1.0472 0.97678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79314000 36958000 42356000 0 0 0 0 0 0 22902000 10796000 12106000 56412000 26162000 30250000 0 0 0 0 0 0 29178 4329 30680 152757;152758;152759 153618;153619;153620;153621 153619 4 RVGMADANSPPKPLSK NGRLENGNQARSEARRVGMADANSPPKPLS VGMADANSPPKPLSKPRTPRRSKSDGEAKP R R V S K P 2 1 1 1 0 0 0 1 0 0 1 2 1 0 3 2 0 0 0 1 0 0 16 2 1666.8825 P26358;K7EJL0 P26358 119 134 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 0.019437 45.723 By MS/MS 1 0.5642 0.6315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5642 0.6315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 747350 429920 317420 0 0 0 0 0 0 0 0 0 747350 429920 317420 0 0 0 0 0 0 29179 2142 30681 152760 153622 153622 1 RVHLMNPMVPGLTGSK FTFAEKYLPALGYSKRVHLMNPMVPGLTGS VHLMNPMVPGLTGSKMSSSEEESKIDLLDR K R V S K M 0 1 1 0 0 0 0 2 1 0 2 1 2 0 2 1 1 0 0 2 0 0 16 1 1735.9226 P54577;A0A0C4DGZ5 P54577 207 222 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 3.2881E-05 59.513 By MS/MS By matching By matching 1 1 1 0.81953 0.82173 4.2972 3 Median 0.81953 0.82173 NaN 1 0 Median 0.85968 0.79379 NaN 1 0 Median 0.77651 0.86458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16985000 9368200 7616500 13889000 7703000 6185600 961110 473530 487570 2135000 1191700 943320 0 0 0 0 0 0 0 0 0 29180 2482 30682 152761;152762;152763 153623;153624 153624 2 RVHNATLILSEGLK FAIYHGSHGLEHIARRVHNATLILSEGLKR RRVHNATLILSEGLKRAGHQLQHDLFFDTL R R V L K R 1 1 1 0 0 0 1 1 1 1 3 1 0 0 0 1 1 0 0 1 0 0 14 1 1549.894 P23378 P23378 410 423 GLDC Glycine dehydrogenase (decarboxylating), mitochondrial yes yes 3 7.6883E-05 73.386 By matching By MS/MS 1 1 1.3984 1.3953 32.184 2 Median 1.0727 1.1113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8229 1.7519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3295800 1520500 1775300 1773000 843690 929350 0 0 0 0 0 0 1522800 676810 845990 0 0 0 0 0 0 29181 2110 30683 152764;152765 153625 153625 1 RVHPALDTYIK TFPYTTILSIWLATRRVHPALDTYIKERKL LATRRVHPALDTYIKERKLCAYPRLEIYQE R R V I K E 1 1 0 1 0 0 0 0 1 1 1 1 0 0 1 0 1 0 1 1 0 0 11 1 1311.7299 C9JXQ7;C9JHH5;Q9Y6I9 C9JXQ7 150 160 TEX264 Testis-expressed sequence 264 protein yes no 3 0.049834 25.892 By MS/MS 1 1.2068 1.2927 NaN 1 Median 1.2068 1.2927 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2686000 1133800 1552300 2686000 1133800 1552300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29182 698 30684 152766 153626 153626 1 RVHPVSTMIK LSVADLAESIMKNLRRVHPVSTMIKGLYGI MKNLRRVHPVSTMIKGLYGIKDDVFLSVPC R R V I K G 0 1 0 0 0 0 0 0 1 1 0 1 1 0 1 1 1 0 0 2 0 0 10 1 1166.6594 P00338 P00338 269 278 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00051514 87.308 By MS/MS By MS/MS By matching 3 1 1 0.94292 0.94294 22.976 5 Median 1.155 1.16 16.148 3 0 Median 0.93271 0.828 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78988 0.74542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33583000 16128000 17455000 18886000 8772000 10114000 13759000 6800900 6958200 0 0 0 938320 555630 382700 0 0 0 0 0 0 29183 1813 30685 152767;152768;152769;152770;152771 153627;153628;153629;153630;153631;153632;153633;153634 153633 8 RVIDYAVK ______________________________ RVLVAVKRVIDYAVKIRVKPDRTGVVTDGV K R V V K I 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 1 962.55492 P38117;M0QY67 P38117 12 19 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.0050481 89.296 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.1802 1.2149 20.885 7 Median 1.0222 1.0239 2.5908 3 0 Median 1.5181 1.3642 10.525 2 0 Median 1.1802 1.2149 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4953 1.7642 NaN 1 0 Median NaN NaN NaN 0 0 Median 11766000 5316400 6449700 6653300 3240100 3413200 2486400 1067000 1419400 2517700 974700 1543000 0 0 0 108700 34582 74118 0 0 0 29184 2272 30686 152772;152773;152774;152775;152776;152777;152778 153635;153636;153637;153638;153639 153636 5 RVIISAPSADAPMFVMGVNHEK TTMEKAGAHLQGGAKRVIISAPSADAPMFV SADAPMFVMGVNHEKYDNSLKIISNASCTT K R V E K Y 3 1 1 1 0 0 1 1 1 2 0 1 2 1 2 2 0 0 0 3 0 0 22 1 2368.2032 P04406;E7EUT5 P04406 118 139 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3;4 1.1973E-25 97.776 By MS/MS By MS/MS By MS/MS By matching 4 1 2 1 0.75356 0.71537 36.644 8 Median 0.69026 0.71708 50.771 4 2 Median 0.79027 0.70259 NaN 1 0 Median 0.56069 0.60966 35.175 2 1 Median 0.82319 0.72839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187970000 129150000 58827000 162940000 114540000 48398000 12069000 6345700 5723000 12671000 8116900 4553700 291520 139330 152200 0 0 0 0 0 0 29185 1850 30687;30688 152779;152780;152781;152782;152783;152784;152785;152786 153640;153641;153642;153643;153644;153645;153646;153647;153648;153649 153646 610;611 10 RVIISAPSADAPMFVMGVNHEKYDNSLK TTMEKAGAHLQGGAKRVIISAPSADAPMFV FVMGVNHEKYDNSLKIISNASCTTNCLAPL K R V L K I 3 1 2 2 0 0 1 1 1 2 1 2 2 1 2 3 0 0 1 3 0 0 28 2 3088.5474 P04406;E7EUT5 P04406 118 145 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 4 2.0725E-05 34.04 By MS/MS 1 0.67414 0.71375 NaN 1 Median 0.67414 0.71375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11439000 6181300 5257500 11439000 6181300 5257500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29186 1850 30689 152787 153650 153650 1 RVLDELTLAR QALRLSVEADINGLRRVLDELTLARADLEM INGLRRVLDELTLARADLEMQIENLKEELA R R V A R A 1 2 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 10 1 1184.6877 CON__P08779;P08779;A8MT21;C9JTG5;P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;CON__Q6IFX2;CON__P08727;P08727;K7EMS3;C9JM50;CON__P19001 CON__Q04695 192 201 KRT16;KRT15;KRT14;KRT17;KRT19 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 0.00078305 111.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 1.0866 1.0321 94.138 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2536 1.3205 37.714 2 0 Median 0.56971 0.53141 96.134 3 1 Median 1.9183 2.0826 NaN 1 1 Median NaN NaN NaN 0 0 Median 71865000 35558000 36307000 4441900 4441900 0 0 0 0 41541000 20996000 20546000 10326000 5744000 4582000 15555000 4376000 11179000 0 0 0 + 29187 768;739;752;754;787;760 30690 152788;152789;152790;152791;152792;152793;152794 153651;153652;153653;153654;153655 153653 5 RVLDELTLTK VALRQSVEADINGLRRVLDELTLTKADLEM INGLRRVLDELTLTKADLEMQIESLTEELA R R V T K A 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 10 1 1186.6921 P13645;CON__P13645 P13645 257 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 4.7855E-18 160.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 7 9 5 2 0.023539 0.027325 135.18 15 Median 0.019465 0.019924 137.94 2 2 Median 0.027729 0.025432 118.15 4 4 Median 0.021764 0.024954 134.82 4 4 Median 0.020998 0.019912 204.43 4 4 Median 0.064733 0.073011 NaN 1 1 Median NaN NaN NaN 0 0 Median 357010000 349630000 7385500 106290000 105920000 369910 47222000 46777000 444530 51257000 49704000 1553500 85484000 80529000 4955200 54454000 54392000 62424 12304000 12304000 0 + 29188 756 30691 152795;152796;152797;152798;152799;152800;152801;152802;152803;152804;152805;152806;152807;152808;152809;152810;152811;152812;152813;152814;152815;152816;152817;152818;152819;152820;152821;152822;152823;152824;152825;152826;152827;152828;152829;152830;152831;152832 153656;153657;153658;153659;153660;153661;153662;153663;153664;153665;153666;153667;153668;153669;153670;153671;153672;153673;153674;153675;153676;153677;153678;153679;153680;153681;153682;153683;153684;153685;153686;153687;153688;153689;153690;153691;153692;153693;153694 153656 39 RVLDETAR SGIKALYESELADARRVLDETARERARLQI SELADARRVLDETARERARLQIEIGKLRAE R R V A R E 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 1 958.51959 Q03252 Q03252 105 112 LMNB2 Lamin-B2 yes yes 2 0.033976 43.808 By matching By MS/MS By matching 1 3 1 1.1052 1.2333 17.176 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1052 1.2333 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1665 1.2404 15.269 3 0 Plateau 1.5834 1.4314 NaN 1 0 Median 3500400 1596400 1904000 0 0 0 0 0 0 892990 402360 490630 0 0 0 2343400 1092100 1251400 263940 101980 161960 29189 2709 30692 152833;152834;152835;152836;152837 153695 153695 1 RVLEEGSVEAR AKSHLEVPLEENVNRRVLEEGSVEARTIED NVNRRVLEEGSVEARTIEDAIAVLSVAEEA R R V A R T 1 2 0 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 11 1 1243.6521 Q96CT7 Q96CT7 135 145 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2;3 4.1031E-05 79.492 By MS/MS By MS/MS 2 3 1.0814 1.0328 9.6235 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1327 1.1823 6.5611 2 0 Median 1.0811 1.0088 2.7565 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7873400 3553900 4319400 0 0 0 0 0 0 2648000 1274000 1374000 5225400 2279900 2945400 0 0 0 0 0 0 29190 3621 30693 152838;152839;152840;152841;152842 153696;153697;153698;153699;153700;153701 153699 6 RVLGLVLLR KIKPKNSKQAEREEKRVLGLVLLRGENLVS AEREEKRVLGLVLLRGENLVSMTVEGPPPK K R V L R G 0 2 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 9 1 1037.7073 P14678;J3QLE5;P63162 P14678 65 73 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 1.2705E-53 231.87 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 2 2 1.2929 1.2431 8.7493 11 Median 1.1929 1.2797 4.4607 2 1 Median 1.4246 1.2099 NaN 1 0 Median 1.147 1.2431 2.8454 3 0 Median 1.325 1.1864 NaN 1 0 Median 1.3538 1.4565 7.635 2 0 Median 1.4414 1.2792 14.044 2 0 Median 183050000 80472000 102580000 49891000 21608000 28283000 5153600 2165700 2988000 71360000 32743000 38617000 6364500 2583500 3781000 20010000 8437000 11573000 30274000 12935000 17339000 29191 2009 30694 152843;152844;152845;152846;152847;152848;152849;152850;152851;152852;152853 153702;153703;153704;153705;153706;153707;153708;153709 153706 8 RVLIAAHGNSLR PFWNEEIVPQIKEGKRVLIAAHGNSLRGIV EGKRVLIAAHGNSLRGIVKHLEGLSEEAIM K R V L R G 2 2 1 0 0 0 0 1 1 1 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1305.763 P18669;P15259 P18669 180 191 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 3 1.0495E-15 144.7 By MS/MS By MS/MS By MS/MS By matching By matching 4 1 1 1 1 1.1934 1.2346 13.101 8 Median 1.1751 1.2561 9.8255 4 2 Median 1.1835 1.0051 NaN 1 0 Median 1.2034 1.2478 NaN 1 0 Median 1.1714 1.0489 NaN 1 0 Median 1.3392 1.4524 NaN 1 0 Median NaN NaN NaN 0 0 Median 88115000 40413000 47702000 52449000 24138000 28312000 26149000 11985000 14164000 7346200 3308100 4038100 1221400 566950 654470 949840 415270 534570 0 0 0 29192 2060 30695 152854;152855;152856;152857;152858;152859;152860;152861 153710;153711;153712;153713;153714;153715 153711 6 RVLLGETGK ERAYQKQPTIFQNKKRVLLGETGKEKLPRY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK K R V G K E 0 1 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 1 971.57638 M0QZC5;P62280;M0R1H6 M0QZC5 22 30 RPS11 40S ribosomal protein S11 yes no 2 0.020849 53.166 By MS/MS 1 1.0872 0.95911 NaN 1 Median NaN NaN NaN 0 0 Median 1.0872 0.95911 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1287600 545320 742320 0 0 0 1287600 545320 742320 0 0 0 0 0 0 0 0 0 0 0 0 29193 1422 30696 152862 153716 153716 1 RVLLGETGKEK ERAYQKQPTIFQNKKRVLLGETGKEKLPRY QNKKRVLLGETGKEKLPRYYKNIGLGFKTP K R V E K L 0 1 0 0 0 0 2 2 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 2 1228.7139 M0QZC5;P62280;M0R1H6 M0QZC5 22 32 RPS11 40S ribosomal protein S11 yes no 3 0.0015736 47.288 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.0573 1.1343 11.274 7 Median 1.0371 1.0972 3.6381 2 0 Median 1.0907 1.0273 14.007 2 0 Median 1.1766 1.3174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0479 1.2221 1.2548 2 0 Median NaN NaN NaN 0 0 Median 2250500 1085900 1164600 859090 403840 455250 684520 333710 350810 387100 170230 216880 0 0 0 319830 178170 141660 0 0 0 29194 1422 30697 152863;152864;152865;152866;152867;152868;152869 153717;153718;153719 153718 3 RVLLLAGR KYLKALDTRMAAESRRVLLLAGRLAAQSLD RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ R R V G R L 1 2 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 1 896.59197 P07199 P07199 291 298 CENPB Major centromere autoantigen B yes yes 2 0.018279 54.157 By matching By MS/MS By MS/MS 1 1 3 1.4266 1.4925 15.203 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3374 1.4925 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1927 1.2959 NaN 1 0 Median 1.7984 1.59 18.782 3 0 Median 12438000 4853500 7584200 0 0 0 0 0 0 1532000 613890 918080 0 0 0 6669300 2716300 3953000 4236400 1523300 2713100 29195 1882 30698 152870;152871;152872;152873;152874 153720;153721;153722 153720 3 RVLPPNWK IESRIHRLARYYKTKRVLPPNWKYESSTAS ARYYKTKRVLPPNWKYESSTASALVA____ K R V W K Y 0 1 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 1 0 1 0 0 8 1 1008.5869 P62277 P62277 133 140 RPS13 40S ribosomal protein S13 yes yes 2 4.2732E-09 173.85 By MS/MS By MS/MS By matching 1 1 1 0.83715 0.74255 8.7546 3 Median 0.75254 0.74255 NaN 1 0 Median 0.83715 0.73871 NaN 1 0 Median 0.83972 0.86184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17665000 9855600 7808900 11709000 6791300 4917600 4260700 2226800 2033900 1694900 837450 857430 0 0 0 0 0 0 0 0 0 29196 2580 30699 152875;152876;152877 153723;153724;153725;153726;153727;153728 153724 6 RVLQALEGLK VMPSHFSRGSKSVARRVLQALEGLKMVEKD KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R R V L K M 1 1 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 1 1125.687 P39019;A0A075B6E2 P39019 102 111 RPS19 40S ribosomal protein S19 yes no 2 1.1845E-15 190.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 1.2103 1.157 13.606 10 Median 1.1876 1.1461 11.131 3 0 Median 1.1608 1.025 2.9198 2 0 Median 1.1737 1.2053 9.9131 2 0 Median 1.3194 1.168 NaN 1 0 Median 1.2334 1.3956 NaN 1 0 Median 1.6746 1.5142 NaN 1 0 Median 1032000000 458460000 573520000 563190000 251820000 311370000 270020000 121510000 148510000 135910000 59073000 76841000 35590000 14319000 21271000 26910000 11618000 15293000 344070 111740 232340 29197 2280 30700 152878;152879;152880;152881;152882;152883;152884;152885;152886;152887 153729;153730;153731;153732;153733;153734;153735;153736;153737;153738;153739;153740;153741;153742;153743;153744;153745;153746 153744 18 RVLQQFADNDVSR KPILHGLCTFGFSARRVLQQFADNDVSRFK ARRVLQQFADNDVSRFKAIKARFAKPVYPG R R V S R F 1 2 1 2 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 13 1 1546.7852 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 543 555 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2;3 6.7708E-22 194.24 By MS/MS By MS/MS By MS/MS 3 4 4 1.1095 1.1289 23.408 10 Median 1.0893 1.1169 3.2322 3 0 Median NaN NaN NaN 0 0 Median 0.89206 0.99547 20.794 3 1 Median 1.6129 1.5045 30.96 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75659000 32540000 43119000 14286000 6676100 7610300 0 0 0 19459000 10078000 9380800 41913000 15786000 26128000 0 0 0 0 0 0 29198 393 30701 152888;152889;152890;152891;152892;152893;152894;152895;152896;152897;152898 153747;153748;153749;153750;153751;153752;153753;153754;153755;153756;153757;153758 153757 12 RVLSGEFQIVNPHLLK NNESIEPYTSNIYTRRVLSGEFQIVNPHLL VLSGEFQIVNPHLLKDLTERGLWHEEMKNQ R R V L K D 0 1 1 0 0 1 1 1 1 1 3 1 0 1 1 1 0 0 0 2 0 0 16 1 1849.0574 P23921;E9PL69 P23921 628 643 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 3 0.0057016 25.319 By MS/MS By matching 1 1 1.0887 1.1006 5.0033 2 Median 1.109 1.1403 NaN 1 0 Median 1.0686 1.0624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27904000 13016000 14888000 20883000 9623000 11260000 7021100 3393100 3628000 0 0 0 0 0 0 0 0 0 0 0 0 29199 2121 30702 152899;152900 153759 153759 1 RVLVDVER HSAYKHADGKKIDGRRVLVDVERGRTVKGW GKKIDGRRVLVDVERGRTVKGWRPRRLGGG R R V E R G 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 8 1 984.57163 P08621 P08621 173 180 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0039137 128 By MS/MS By matching By matching By MS/MS By MS/MS 2 2 1 2 1 0.90757 0.95832 13.439 8 Median NaN NaN NaN 0 0 Median 0.94747 0.88658 18.946 2 0 Median 0.78317 0.83153 23.736 2 0 Median 0.89798 0.83798 NaN 1 0 Median 0.90757 0.976 1.4431 2 0 Median 1.0752 0.95061 NaN 1 0 Median 35148000 17698000 17449000 0 0 0 5736500 3089600 2646900 8578900 4506600 4072300 745400 332520 412880 15020000 7431000 7588700 5067200 2338600 2728600 29200 1905 30703 152901;152902;152903;152904;152905;152906;152907;152908 153760;153761;153762;153763;153764 153761 5 RVLVWDLR LSVSGDRLIVGTAGRRVLVWDLRNMGYVQQ IVGTAGRRVLVWDLRNMGYVQQRRESSLKY R R V L R N 0 2 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 8 1 1055.624 O43684;J3QT28 O43684 158 165 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.0050073 104.45 By matching By matching By MS/MS By matching By matching 1 1 2 2 1 1.1534 1.0482 11.914 6 Linear 1.0614 1.1167 NaN 1 0 Median 1.0411 0.95825 NaN 1 0 Median 1.1242 1.1734 NaN 1 0 Median 1.0143 0.9193 9.6058 2 0 Median 1.0502 1.1209 NaN 1 0 Median NaN NaN NaN 0 0 Median 21284000 10132000 11152000 2724400 1256600 1467800 247100 119620 127480 11678000 5565000 6112900 3931800 1812400 2119400 2702300 1378300 1324000 0 0 0 29201 1357 30704 152909;152910;152911;152912;152913;152914;152915 153765;153766;153767 153765 3 RVLVYGGR ______________________________ AAAGEARRVLVYGGRGALGSRCVQAFRARN R R V G R G 0 2 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 1 2 0 0 8 1 918.53993 P09417;B7Z415;D6RGG7;D6RHJ7 P09417 12 19 QDPR Dihydropteridine reductase yes no 2 0.023461 49.358 By MS/MS 1 0.96489 1.0314 NaN 1 Median 0.96489 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1679400 787470 891940 1679400 787470 891940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29202 1914 30705 152916 153768;153769 153769 2 RVNAIEHVIIPR TSFVTLDEAIKITNRRVNAIEHVIIPRIER TNRRVNAIEHVIIPRIERTLAYIITELDER R R V P R I 1 2 1 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 2 0 0 12 1 1415.8361 G3V2S6;Q9Y5K8;G3V2V6;H0YJH8 G3V2S6 113 124 ATP6V1D V-type proton ATPase subunit D yes no 3 0.0001524 62.924 By MS/MS By MS/MS 1 2 0.83216 0.89587 18.448 3 Median 0.83216 0.89587 NaN 1 0 Median 0.88367 0.78129 23.576 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18177000 10058000 8119400 13801000 7456900 6344000 4376100 2600800 1775300 0 0 0 0 0 0 0 0 0 0 0 0 29203 1108 30706 152917;152918;152919 153770;153771;153772 153770 3 RVNILSDMHLR TTQLMILSASEATVKRVNILSDMHLRSIRT ATVKRVNILSDMHLRSIRTKLMLMSRNEEA K R V L R S 0 2 1 1 0 0 0 0 1 1 2 0 1 0 0 1 0 0 0 1 0 0 11 1 1352.7347 B4DXZ6;P51114;E7EU85;E9PFF5;C9JZE0;C9JY20 B4DXZ6 167 177 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 4.7202E-05 74.962 By MS/MS 1 1.348 1.3281 NaN 1 Median 1.348 1.3281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8142600 2952600 5190000 8142600 2952600 5190000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29204 608 30707 152920 153773 153773 1 RVNKEESLQMQVQDILEQNEALK QLEQRLMQLMESEQKRVNKEESLQMQVQDI QMQVQDILEQNEALKAQIQQFHSQIAAQTS K R V L K A 1 1 2 1 0 4 4 0 0 1 3 2 1 0 0 1 0 0 0 2 0 0 23 2 2741.4018 Q86UP2 Q86UP2 560 582 KTN1 Kinectin yes yes 3;4 1.9358E-07 39.288 By MS/MS By MS/MS By matching 3 3 1 1.1773 1.1947 30.849 7 Median 1.1302 1.1947 44.557 3 0 Median 1.5729 1.5382 19.009 3 0 Plateau 1.3044 1.4863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9991300 4257700 5733600 5912400 2535900 3376500 2392600 1068300 1324300 1686400 653460 1032900 0 0 0 0 0 0 0 0 0 29205 3280 30708 152921;152922;152923;152924;152925;152926;152927 153774;153775;153776 153774 3 RVNLAIWDTAGQER LQASFLTKKLNIGGKRVNLAIWDTAGQERF KRVNLAIWDTAGQERFHALGPIYYRDSNGA K R V E R F 2 2 1 1 0 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 14 1 1627.8431 Q9UL25 Q9UL25 67 80 RAB21 Ras-related protein Rab-21 yes yes 3 0.055123 18.096 By MS/MS 1 0.85086 0.90952 NaN 1 Median 0.85086 0.90952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10080000 6148700 3931200 10080000 6148700 3931200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29206 4320 30709 152928 153777 153777 0 RVNSASSSNPPAEVDPDTILK LSDSPSMKKESELPRRVNSASSSNPPAEVD SSNPPAEVDPDTILKALFKSSGASVTTQPT R R V L K A 2 1 2 2 0 0 1 0 0 1 1 1 0 0 3 4 1 0 0 2 0 0 21 1 2196.1022 F6VRR5;Q9BY77 F6VRR5 397 417 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 2.378E-11 68.88 By MS/MS By MS/MS 1 2 0.71113 0.66731 12.127 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54025 0.54979 NaN 1 0 Median 0.71591 0.67724 2.0871 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78741000 45359000 33383000 0 0 0 0 0 0 50643000 30863000 19780000 28098000 14496000 13603000 0 0 0 0 0 0 29207 1051 30710 152929;152930;152931 153778;153779;153780;153781 153779 4 RVPATTLYAHFEQANIK VVIYVVERSPNGTSRRVPATTLYAHFEQAN PATTLYAHFEQANIKTQLQQLGVTLSMTRT R R V I K T 3 1 1 0 0 1 1 0 1 1 1 1 0 1 1 0 2 0 1 1 0 0 17 1 1958.0374 Q7Z3B4 Q7Z3B4 255 271 NUP54 Nucleoporin p54 yes yes 3 9.6142E-13 126.63 By MS/MS By MS/MS By MS/MS 1 1 1 1.2557 1.1784 14.931 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85825 0.96804 NaN 1 0 Median 1.2557 1.1784 NaN 1 0 Median 1.2608 1.2976 NaN 1 0 Median NaN NaN NaN 0 0 Median 48895000 24465000 24430000 0 0 0 0 0 0 39307000 20108000 19198000 3398700 1461200 1937500 6189300 2895200 3294100 0 0 0 29208 3239 30711 152932;152933;152934 153782;153783;153784;153785;153786;153787;153788 153784 7 RVPFSLLR ______________________________ ______________________________ R R V L R G 0 2 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 P04792;F8WE04 P04792 5 12 HSPB1 Heat shock protein beta-1 yes no 2 1.097E-40 219.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 0.89057 0.93347 27.65 7 Median 0.91515 0.97824 11.291 3 0 Plateau 1.2124 1.0297 NaN 1 0 Median 0.53783 0.55764 NaN 1 0 Median 1.4097 1.2622 NaN 1 0 Median 0.61983 0.67221 NaN 1 0 Median NaN NaN NaN 0 0 Median 220570000 120800000 99769000 142070000 76176000 65889000 24013000 10818000 13194000 23193000 15401000 7791900 3083500 1222000 1861600 28214000 17182000 11031000 0 0 0 29209 1851 30712 152935;152936;152937;152938;152939;152940;152941 153789;153790;153791;153792;153793;153794;153795;153796;153797;153798;153799;153800;153801;153802;153803;153804;153805;153806;153807;153808 153792 20 RVPIPVDR RLAILMKTAEENLDRRVPIPVDRSCGGL__ AEENLDRRVPIPVDRSCGGL__________ R R V D R S 0 2 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 8 1 950.56615 P43304 P43304 715 722 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.019281 52.786 By MS/MS By MS/MS 2 2 0.88428 0.88876 6.746 4 Median 0.88428 0.88876 5.8516 2 0 Median 0.91548 0.8678 9.8279 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10171000 5007400 5163800 3413000 1687300 1725700 6758200 3320200 3438100 0 0 0 0 0 0 0 0 0 0 0 0 29210 2325 30713 152942;152943;152944;152945 153809;153810;153811;153812 153812 4 RVPLTALLNQSR KKWQELEKLPLRENKRVPLTALLNQSRGER ENKRVPLTALLNQSRGERRGPPSDGHEALE K R V S R G 1 2 1 0 0 1 0 0 0 0 3 0 0 0 1 1 1 0 0 1 0 0 12 1 1366.8045 Q9H2D6;H0Y5J9 Q9H2D6 2043 2054 TRIOBP TRIO and F-actin-binding protein yes no 2;3 0.014402 63.473 By MS/MS By matching 2 2 0.97127 0.9904 24.437 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73994 0.82572 1.4493 2 0 Median 1.3409 1.2494 8.5889 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8954400 4795800 4158600 0 0 0 0 0 0 7550800 4239800 3310900 1403600 555910 847690 0 0 0 0 0 0 29211 3941 30714 152946;152947;152948;152949 153813;153814 153814 0 RVPPPALSR DDRKDDRVEERDPPRRVPPPALSRDRERDR ERDPPRRVPPPALSRDRERDRDREREGEKE R R V S R D 1 2 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 9 1 991.5927 Q14152 Q14152 1329 1337 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0099757 52.786 By MS/MS By MS/MS 1 1 0.71475 0.74277 6.9198 2 Median 0.66139 0.7073 NaN 1 0 Median 0.77242 0.78002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7690400 4579700 3110700 2973000 1830900 1142100 4717400 2748800 1968600 0 0 0 0 0 0 0 0 0 0 0 0 29212 2860 30715 152950;152951 153815;153816;153817;153818 153817 4 RVPQAKPVAVEEK RLRNYVPEDEDLKKRRVPQAKPVAVEEKVK KRRVPQAKPVAVEEKVKEQ___________ R R V E K V 2 1 0 0 0 1 2 0 0 0 0 2 0 0 2 0 0 0 0 3 0 0 13 2 1449.8304 C9JUN5;J3KR35;Q8WUD4 C9JUN5 73 85 CCDC12 Coiled-coil domain-containing protein 12 yes no 3 0.035792 20.124 By MS/MS By matching By matching By matching 1 1 1 1 0.81799 0.77878 14.716 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73051 0.81789 NaN 1 0 Median 0.87585 0.72244 NaN 1 0 Median 0.84632 0.99918 NaN 1 0 Median 0.79062 0.74154 NaN 1 0 Median 2381100 1337500 1043600 0 0 0 0 0 0 1183600 671340 512240 249740 156500 93236 868530 467860 400670 79233 41786 37447 29213 725 30716 152952;152953;152954;152955 153819 153819 1 RVPSNASWEQAMK KEEAKQAFKELLKEKRVPSNASWEQAMKMI EKRVPSNASWEQAMKMIINDPRYSALAKLS K R V M K M 2 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 13 1 1502.73 O75400;A0A3F2YNY6;F5H578 O75400 408 420 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2;3 9.095E-06 99.844 By MS/MS By MS/MS By MS/MS 4 2 1 0.73913 0.77483 30.407 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80061 0.90837 27.051 4 1 Median 0.92172 0.88579 31.222 2 2 Median NaN NaN NaN 0 0 Median 0.60394 0.52878 NaN 1 0 Median 46896000 21516000 25381000 0 0 0 0 0 0 39892000 17726000 22165000 6067000 3136300 2930700 0 0 0 937910 652810 285100 29214 1670 30717 152956;152957;152958;152959;152960;152961;152962 153820;153821;153822;153823;153824;153825;153826;153827 153821 7 RVPSPVLIK ESLAAVAYLLNLVLKRVPSPVLIKKFSDTS LNLVLKRVPSPVLIKKFSDTSKAFMDIMSA K R V I K K 0 1 0 0 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 2 0 0 9 1 1007.6492 Q5JTH9 Q5JTH9 177 185 RRP12 RRP12-like protein yes yes 2 0.0069792 59.245 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 2 1.0274 0.96915 4.1077 6 Median NaN NaN NaN 0 0 Median 1.0304 0.9672 NaN 1 0 Median 0.85121 0.97111 NaN 1 0 Median 1.0243 0.9844 NaN 1 0 Median 0.79224 0.89715 NaN 1 0 Median 1.0973 0.97024 5.3005 2 0 Median 14684000 7487300 7196700 0 0 0 4595600 2315700 2279900 1692100 940840 751250 395700 199990 195710 6224300 3357300 2867000 1776300 673480 1102800 29215 3052 30718 152963;152964;152965;152966;152967;152968 153828;153829 153829 2 RVPTGLPFIK SLIHFFGEEYLEYKKRVPTGLPFIKGVKVD LEYKKRVPTGLPFIKGVKVDL_________ K R V I K G 0 1 0 0 0 0 0 1 0 1 1 1 0 1 2 0 1 0 0 1 0 0 10 1 1126.6863 O60725 O60725 269 278 ICMT Protein-S-isoprenylcysteine O-methyltransferase yes yes 2 0.017548 41.448 By matching By MS/MS 1 1 0.88279 0.8689 9.2468 2 Median 0.78391 0.81391 NaN 1 0 Median 0.99414 0.92762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15383000 8823200 6559500 10929000 6625700 4303800 4453200 2197400 2255800 0 0 0 0 0 0 0 0 0 0 0 0 29216 1628 30719 152969;152970 153830 153830 1 RVPVLGSLLNLPGIR LLFRGFFPVVVGFIRRVPVLGSLLNLPGIR RVPVLGSLLNLPGIRSFVDKVGESNNMV__ R R V I R S 0 2 1 0 0 0 0 2 0 1 4 0 0 0 2 1 0 0 0 2 0 0 15 1 1602.9933 Q9Y3E0;G3V1U5;F5H6U7 Q9Y3E0 111 125 GOLT1B Vesicle transport protein GOT1B yes no 2;3 0.0061705 37.013 By MS/MS By matching 4 4 0.86222 0.90892 13.635 7 Median 0.82386 0.89529 20.112 3 1 Median 0.92406 0.91724 7.7022 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9174200 4648700 4525500 6257900 3213400 3044500 2916300 1435300 1481000 0 0 0 0 0 0 0 0 0 0 0 0 29217 4425 30720 152971;152972;152973;152974;152975;152976;152977;152978 153831;153832;153833 153833 3 RVQDPLAELVK PGLDPNLRSAVSIARRVQDPLAELVKIEPK SIARRVQDPLAELVKIEPKHIGVGMYQHDV R R V V K I 1 1 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 1 1266.7296 Q8N5C6 Q8N5C6 661 671 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 0.0029326 55.567 By matching By MS/MS By matching 1 2 1 1.2005 1.0904 20.032 4 Median NaN NaN NaN 0 0 Median 1.1926 1.0238 NaN 1 0 Median 0.9233 0.98571 31.977 2 0 Median 1.2084 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7255200 3637400 3617900 0 0 0 875740 420230 455510 5856100 2978600 2877500 523390 238500 284890 0 0 0 0 0 0 29218 3377 30721 152979;152980;152981;152982 153834 153834 1 RVQELQQGAFGR LQRGGLKQLSARNRRRVQELQQGAFGRGAR NRRRVQELQQGAFGRGARSKKGKMRKRM__ R R V G R G 1 2 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 12 1 1387.732 Q8TDD1 Q8TDD1 857 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.00051634 71.085 By MS/MS By MS/MS 1 1 1.4085 1.6274 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4085 1.6274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2134000 838790 1295200 0 0 0 0 0 0 2134000 838790 1295200 0 0 0 0 0 0 0 0 0 29219 3470 30722 152983;152984 153835;153836 153836 1 RVQFGVLSPDELKR GPPSGDSACPLRTIKRVQFGVLSPDELKRM KRVQFGVLSPDELKRMSVTEGGIKYPETTE K R V K R M 0 2 0 1 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 14 2 1642.9155 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 20 33 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.025161 35.657 By matching By MS/MS 1 1 0.80839 0.89513 8.0239 2 Median 0.82892 0.84575 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78837 0.94738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5590900 3048500 2542400 2019000 1151400 867660 0 0 0 3571800 1897100 1674800 0 0 0 0 0 0 0 0 0 29220 486 30723 152985;152986 153837 153837 0 RVQLAEDLKK FAEDGEKKIKLLTGKRVQLAEDLKKVREIQ LLTGKRVQLAEDLKKVREIQEKLDAFIEAL K R V K K V 1 1 0 1 0 1 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 2 1198.7034 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YDM2;A0A2R8YFD1;H7C141 A0A2R8Y3X5 826 835 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.00013519 76.143 By MS/MS 1 1.5939 1.6869 NaN 1 Median NaN NaN NaN 0 0 Median 1.5939 1.6869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1818800 719510 1099300 0 0 0 1818800 719510 1099300 0 0 0 0 0 0 0 0 0 0 0 0 29221 357 30724 152987 153838;153839 153838 2 RVQTPLLR FEVEEVETPNSTPPRRVQTPLLRATVASST PNSTPPRRVQTPLLRATVASSTQKFQDLGV R R V L R A 0 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 1 981.60835 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 46 53 SEPT9 Septin-9 yes no 2 0.0083318 73.665 By matching By matching By MS/MS By MS/MS 1 1 2 3 1.1916 1.116 14.395 7 Median 1.1301 1.1275 NaN 1 0 Median 1.7168 1.5592 NaN 1 0 Median 0.97244 1.0522 8.33 2 0 Median 1.2166 1.078 2.9108 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22855000 11199000 11656000 552690 212390 340290 1219800 603850 615960 15610000 7921800 7687800 5472600 2460800 3011800 0 0 0 0 0 0 29222 4276 30725 152988;152989;152990;152991;152992;152993;152994 153840;153841;153842 153840 3 RVQVYLHESTQDELAR EYMKKAEARLLEEQRRVQVYLHESTQDELA VQVYLHESTQDELARKCEQVLIEKHLEIFH R R V A R K 1 2 0 1 0 2 2 0 1 0 2 0 0 0 0 1 1 0 1 2 0 0 16 1 1942.9861 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 250 265 CUL1 Cullin-1 yes no 3 0.0044536 25.957 By MS/MS 1 1.1479 1.3264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1479 1.3264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3962400 2158400 1804000 0 0 0 0 0 0 3962400 2158400 1804000 0 0 0 0 0 0 0 0 0 29223 256 30726 152995 153843 153843 1 RVREEEIEVDSR PKRKKGEKRASSPFRRVREEEIEVDSRVAD PFRRVREEEIEVDSRVADNSFDAKRGAAGD R R V S R V 0 3 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 12 2 1515.7641 A0A0A0MRM9;Q14978 A0A0A0MRM9 636 647 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 3 0.030564 29.807 By MS/MS By MS/MS 1 1 1.2493 1.3615 30.986 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4662 1.695 NaN 1 0 Median 1.0646 1.0936 NaN 1 0 Median 2094000 704210 1389800 0 0 0 0 0 0 0 0 0 0 0 0 1497900 471850 1026000 596170 232360 363810 29224 165 30727 152996;152997 153844;153845 153845 1 RVSDSAIIHTSMGDIHTK SKEEVMAATQAEGPKRVSDSAIIHTSMGDI DSAIIHTSMGDIHTKLFPVECPKTVENFCV K R V T K L 1 1 0 2 0 0 0 1 2 3 0 1 1 0 0 3 2 0 0 1 0 0 18 1 1966.9895 Q96BP3;F5H7P7 Q96BP3 489 506 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 4 2.0987E-06 56.819 By MS/MS By matching 1 1 0.93365 0.92168 43.531 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1798 1.2539 NaN 1 0 Median 0.73889 0.67748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14799000 5526000 9273000 0 0 0 0 0 0 14051000 5172500 8878700 747780 353450 394330 0 0 0 0 0 0 29225 3609 30728 152998;152999 153846;153847 153846 2 RVSHQGYSTEAEFEEPR KEKLRSINQGLDRLRRVSHQGYSTEAEFEE SHQGYSTEAEFEEPRVIDLWDLAQSANLTD R R V P R V 1 2 0 0 0 1 4 1 1 0 0 0 0 1 1 2 1 0 1 1 0 0 17 1 2020.9239 P30533 P30533 240 256 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes yes 3;4 4.0435E-06 78.078 By MS/MS By MS/MS By MS/MS 1 2 2 1.0228 0.97854 9.5176 5 Median NaN NaN NaN 0 0 Median 1.1278 1.0532 NaN 1 0 Median 1.0063 1.0314 7.4444 2 0 Median 1.0075 0.88688 2.1354 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23193000 11337000 11855000 0 0 0 2110300 1047600 1062700 13876000 6991900 6883900 7206500 3297900 3908600 0 0 0 0 0 0 29226 2196 30729 153000;153001;153002;153003;153004 153848;153849;153850;153851;153852;153853;153854;153855 153855 8 RVSISEGDDKIEYR VTKNLVPGESVYGEKRVSISEGDDKIEYRA KRVSISEGDDKIEYRAWNPFRSKLAAAILG K R V Y R A 0 2 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 14 2 1665.8322 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 122 135 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3;4 6.8571E-08 152 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1.0507 1.2007 18.377 10 Median NaN NaN NaN 0 0 Median 1.1286 1.2504 NaN 1 0 Median 1.0446 1.2267 1.8099 2 0 Median 1.387 1.2541 7.3664 2 0 Median 0.79559 0.90893 26.098 2 0 Median 1.3074 1.3647 20.935 3 0 Plateau 85809000 39645000 46163000 0 0 0 749790 367420 382370 41326000 19720000 21606000 10185000 4023700 6161300 21001000 10534000 10467000 12547000 5000100 7546600 29227 2097 30730 153005;153006;153007;153008;153009;153010;153011;153012;153013;153014 153856;153857;153858;153859;153860;153861;153862;153863;153864;153865 153861 10 RVSLEPHQGPGTPESK QIAEGTGITTRQQRKRVSLEPHQGPGTPES VSLEPHQGPGTPESKKATSCFPRPMTPRDR K R V S K K 0 1 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 16 1 1717.8747 A0A087WY61;Q14980 Q14980 1989 2004 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.013701 21.233 By MS/MS By MS/MS By MS/MS 1 2 1 0.63924 0.64468 4.4048 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54439 0.65063 NaN 1 0 Median 0.66169 0.63879 0 2 0 Median 0.61755 0.70069 NaN 1 0 Median NaN NaN NaN 0 0 Median 5925100 3588600 2336400 0 0 0 0 0 0 3477800 2245500 1232400 836350 444050 392300 1610900 899120 711770 0 0 0 29228 2905;77 30731 153015;153016;153017;153018 153866;153867;153868;153869;153870 153868 5 RVTAYTVDVTGR GDLGETQSRTITVTRRVTAYTVDVTGREGA VTRRVTAYTVDVTGREGAKDIDISSPEFKI R R V G R E 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 1 3 0 0 12 1 1336.7099 Q09666 Q09666 156 167 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00018137 98.156 By MS/MS By MS/MS 1 2 1.1454 1.2588 19.555 3 Median NaN NaN NaN 0 0 Median 1.0756 1.0081 NaN 1 1 Median 1.2456 1.3689 11.866 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61148000 27794000 33354000 0 0 0 9717900 3861500 5856400 51430000 23933000 27498000 0 0 0 0 0 0 0 0 0 29229 2749 30732 153019;153020;153021 153871;153872;153873 153871 3 RVTIMPK VGLFEDTNLCAIHAKRVTIMPKDIQLARRI NLCAIHAKRVTIMPKDIQLARRIR______ K R V P K D 0 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 7 1 843.50004 K7EK07;Q71DI3;P84243;P68431;Q16695;Q6NXT2;Q5TEC6;A0A590UJL8 K7EK07 117 123 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2 0.0024854 127.95 By matching By matching By matching By matching By MS/MS By MS/MS 4 3 5 6 10 8 1.1407 1.0357 17.464 35 Median 0.90689 0.90961 27.634 4 0 Median 1.3523 1.1935 12.418 3 0 Median 0.86739 0.9613 17.955 5 0 Median 1.1962 1.166 13.23 6 0 Median 0.8412 0.93664 12.659 9 0 Median 1.2256 1.0587 7.4884 8 0 Median 1036700000 523330000 513410000 3969300 2058600 1910600 12335000 5289700 7045800 8800800 5085800 3715000 3533900 1572800 1961100 648980000 352540000 296440000 359120000 156780000 202340000 29230 1366;3104 30733 153022;153023;153024;153025;153026;153027;153028;153029;153030;153031;153032;153033;153034;153035;153036;153037;153038;153039;153040;153041;153042;153043;153044;153045;153046;153047;153048;153049;153050;153051;153052;153053;153054;153055;153056;153057 153874;153875;153876;153877;153878;153879;153880;153881;153882 153881 9 RVTIMPKDIQLAR VGLFEDTNLCAIHAKRVTIMPKDIQLARRI AKRVTIMPKDIQLARRIR____________ K R V A R R 1 2 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 13 2 1539.8919 K7EK07;Q71DI3;P84243;P68431;Q16695;Q6NXT2 K7EK07 117 129 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C yes no 2;3 0.0001547 72.659 By MS/MS By MS/MS 5 6 1.0664 1.0945 53.541 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79658 0.9552 19.316 5 0 Median 1.5296 1.3661 61.47 6 0 Median 116170000 60301000 55873000 0 0 0 0 0 0 0 0 0 0 0 0 89379000 47550000 41828000 26795000 12751000 14044000 29231 1366 30734;30735 153058;153059;153060;153061;153062;153063;153064;153065;153066;153067;153068 153883;153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896;153897 153890 447 15 RVTYVVLDEADR IDMLAANSGRVTNLRRVTYVVLDEADRMFD NLRRVTYVVLDEADRMFDMGFEPQVMRIVD R R V D R M 1 2 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 3 0 0 12 1 1434.7467 Q7L014;A0A0C4DG89 Q7L014 522 533 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 6.872E-06 101.93 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.366 1.4287 16.738 4 Median 1.662 1.8466 NaN 1 1 Median 1.4793 1.4262 NaN 1 0 Median 1.1768 1.4312 NaN 1 0 Median 1.2613 1.2348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16681000 6438300 10243000 4071300 1337500 2733800 1346800 552910 793880 9674100 3819800 5854300 1589400 728160 861210 0 0 0 0 0 0 29232 3216 30736 153069;153070;153071;153072 153898;153899 153899 2 RVVGVLLGSWQK VVDHFNRIGKVGNQKRVVGVLLGSWQKKVL NQKRVVGVLLGSWQKKVLDVSNSFAVPFDE K R V Q K K 0 1 0 0 0 1 0 2 0 0 2 1 0 0 0 1 0 1 0 3 0 0 12 1 1340.7929 P51665;H3BNT7;H3BTM8 P51665 34 45 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2 0.0017399 55.567 By MS/MS 2 0.98803 1.0518 22.225 2 Median 0.98803 1.0518 22.225 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8509100 3651600 4857600 8509100 3651600 4857600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29233 2440 30737 153073;153074 153900 153900 1 RVVHASGDASYSAGDSGDAAAQPAFTGIK STEKVVQETVLVEERRVVHASGDASYSAGD DSGDAAAQPAFTGIKGKEGSALTEGAKEEG R R V I K G 7 1 0 3 0 1 0 4 1 1 0 1 0 1 1 4 1 0 1 2 0 0 29 1 2805.3318 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 693 721 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 4 0.0011476 32.266 By MS/MS 1 0.87593 0.91115 NaN 1 Median 0.87593 0.91115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3725700 1515500 2210200 3725700 1515500 2210200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29234 156 30738 153075 153901 153901 1 RVVHLGVGTPGR AKHIKVQAQVKLLEKRVVHLGVGTPGRIKE LEKRVVHLGVGTPGRIKELVKQGGLNLSPL K R V G R I 0 2 0 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 3 0 0 12 1 1246.7258 C9J384;Q9BQ75 C9J384 160 171 CMSS1 Protein CMSS1 yes no 3 0.00082582 46.069 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1.0508 1.0968 21.313 7 Median 0.91358 0.98353 NaN 1 0 Median 1.1964 1.1013 NaN 1 1 Median 1.0508 1.0968 NaN 1 0 Median 0.99835 0.93165 NaN 1 0 Median 1.3651 1.4687 9.3638 2 0 Median 0.98493 0.86626 NaN 1 0 Median 8537800 3991300 4546500 1865700 894960 970720 1594000 624800 969220 1516800 802900 713890 1953600 983460 970160 1198500 503570 694930 409150 181610 227530 29235 673 30739 153076;153077;153078;153079;153080;153081;153082 153902;153903;153904;153905;153906;153907;153908;153909;153910 153908 7 RVVLVNNILQNAQER LDLDPYVKKLLNARRRVVLVNNILQNAQER RVVLVNNILQNAQERLRRLNHSVAKETARR R R V E R L 1 2 3 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 3 0 0 15 1 1764.9959 O95295 O95295 91 105 SNAPIN SNARE-associated protein Snapin yes yes 3 0.0037559 38.511 By MS/MS 1 1.119 1.2152 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.119 1.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1194600 480240 714360 0 0 0 0 0 0 1194600 480240 714360 0 0 0 0 0 0 0 0 0 29236 1761 30740 153083 153911 153911 0 RVVLVTSGGTK EVMARFAARLGAQGRRVVLVTSGGTKVPLE AQGRRVVLVTSGGTKVPLEARPVRFLDNFS R R V T K V 0 1 0 0 0 0 0 2 0 0 1 1 0 0 0 1 2 0 0 3 0 0 11 1 1115.6663 Q9HAB8;Q5VVM3 Q9HAB8 36 46 PPCS Phosphopantothenate--cysteine ligase yes no 2 0.00028215 104.79 By matching By MS/MS By matching 1 1 1 1.2177 1.2214 9.7802 3 Median 1.125 1.113 NaN 1 0 Median 1.3476 1.2214 NaN 1 0 Median 1.2177 1.3534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3944400 1801400 2143100 1533300 756550 776760 2208300 945430 1262900 202800 99393 103410 0 0 0 0 0 0 0 0 0 29237 4007 30741 153084;153085;153086 153912 153912 1 RVVNGKVEYFLK EAEPEEFVVEKVLDRRVVNGKVEYFLKWKG LDRRVVNGKVEYFLKWKGFTDADNTWEPEE R R V L K W 0 1 1 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 1 3 0 0 12 2 1450.8296 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 39 50 CBX3 Chromobox protein homolog 3 yes no 3 0.00020655 64.64 By MS/MS 2 0.98654 1.1647 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98654 1.1647 NaN 1 0 Median NaN NaN NaN 0 0 Median 7963300 4085400 3877900 0 0 0 0 0 0 0 0 0 0 0 0 7963300 4085400 3877900 0 0 0 29238 2795 30742 153087;153088 153913;153914;153915 153914 3 RVVPLVQMGETDANVAK SALHFCRAVCRRAERRVVPLVQMGETDANV VPLVQMGETDANVAKFLNRLSDYLFTLARY R R V A K F 2 1 1 1 0 1 1 1 0 0 1 1 1 0 1 0 1 0 0 4 0 0 17 1 1825.972 Q96EY8;S4R3P5 Q96EY8 195 211 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 3 0.015662 19.071 By MS/MS By matching 1 1 0.97405 1.011 4.1612 2 Median 0.9956 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95297 0.98172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11563000 4657300 6905600 8843100 3669800 5173300 0 0 0 2719800 987510 1732300 0 0 0 0 0 0 0 0 0 29239 3645 30743 153089;153090 153916 153916 1 RVVSEIPVLK ______________________________ DEATRRVVSEIPVLKTNAGPRDRELWVQRL R R V L K T 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 3 0 0 10 1 1138.7074 Q9Y3C8 Q9Y3C8 8 17 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 2 0.019903 39.305 By MS/MS By matching 1 1 1.0287 0.96211 6.0708 2 Median 1.0164 1.0043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0412 0.92169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9784900 5290200 4494700 9119000 4965300 4153800 0 0 0 0 0 0 665840 324930 340910 0 0 0 0 0 0 29240 4420 30744 153091;153092 153917 153917 1 RVVVEYLR IKKPYKKRMTAEAHRRVVVEYLRAVMQKRI MTAEAHRRVVVEYLRAVMQKRISFRSPEER R R V L R A 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 3 0 0 8 1 1032.608 O60645 O60645 601 608 EXOC3 Exocyst complex component 3 yes yes 2 0.033976 43.808 By matching By MS/MS 1 1 0.79136 0.83152 3.2132 2 Median NaN NaN NaN 0 0 Median 0.85976 0.85062 NaN 1 0 Median 0.7284 0.81284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2501700 1436400 1065300 0 0 0 608860 313740 295110 1892800 1122600 770200 0 0 0 0 0 0 0 0 0 29241 1623 30745 153093;153094 153918 153918 1 RVVVPELSAGVASR RSEIATERDLVAWSRRVVVPELSAGVASRQ RRVVVPELSAGVASRQEEWRTAKGEEEIKT R R V S R Q 2 2 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 14 1 1438.8256 Q8WWQ0 Q8WWQ0 722 735 PHIP PH-interacting protein yes yes 2 4.5803E-07 115.14 By MS/MS By matching 1 1 0.43243 0.42776 75.404 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67394 0.72905 NaN 1 0 Median 0.27747 0.25098 NaN 1 0 Median 5307900 3467400 1840500 0 0 0 0 0 0 0 0 0 0 0 0 4222700 2678500 1544200 1085300 788950 296310 29242 3512 30746 153095;153096 153919;153920 153919 2 RVVYPLEK AQWLYDNHKDESYLRRVVYPLEKLLTSHKR KDESYLRRVVYPLEKLLTSHKRLVMKDSAV R R V E K L 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 1 1002.5862 O60832;C9IYT0;H7C2Q2 O60832 284 291 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.01717 55.676 By matching By matching By matching By matching By MS/MS 1 1 1 2 1 0.84368 0.80277 12.654 6 Median NaN NaN NaN 0 0 Median 0.82409 0.75527 NaN 1 0 Median 0.92102 1.0316 NaN 1 0 Median 0.87741 0.82335 NaN 1 0 Median 0.73152 0.76908 10.151 2 0 Median 0.86374 0.78271 NaN 1 0 Median 23366000 11895000 11471000 0 0 0 3213300 1083200 2130100 7767800 4177000 3590700 1191800 671700 520100 8265000 4478600 3786400 2928400 1484800 1443700 29243 1634 30747 153097;153098;153099;153100;153101;153102 153921 153921 1 RVVYSAFLMATPR EPLHRGGGQIIPTARRVVYSAFLMATPRLM ARRVVYSAFLMATPRLMEPYYFVEVQAPAD R R V P R L 2 2 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 0 13 1 1509.8126 Q15029 Q15029 814 826 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3 0.00067231 46.481 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.2147 1.0661 20.104 5 Median 1.3395 1.4882 NaN 1 0 Median 1.2147 1.0661 NaN 1 0 Median 0.7758 0.89642 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85251 0.92627 NaN 1 0 Median 1.2202 1.1031 NaN 1 0 Median 9029300 4482900 4546400 2530600 973540 1557100 404030 120730 283300 2589600 1506200 1083400 0 0 0 3394800 1839500 1555300 110220 42919 67297 29244 2917 30748 153103;153104;153105;153106;153107 153922;153923;153924;153925 153923 4 RVWSLER EAAPRLRALTLGLAKRVWSLERRLAAAEET ALTLGLAKRVWSLERRLAAAEETAVSPRKS K R V E R R 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 7 1 944.5192 Q9BUH6 Q9BUH6 131 137 C9orf142 Protein PAXX yes yes 2 0.010574 89.296 By MS/MS By MS/MS 1 1 1.0707 1.0316 8.2416 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0547 1.0935 NaN 1 0 Median 1.0869 0.97321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21446000 10928000 10518000 0 0 0 0 0 0 18540000 9467900 9072000 2906000 1460000 1445900 0 0 0 0 0 0 29245 3839 30749 153108;153109 153926;153927 153926 2 RVYATILNAGTNTDGFK EGVVAVLLTKKSLARRVYATILNAGTNTDG YATILNAGTNTDGFKEQGVTFPSGDIQEQL R R V F K E 2 1 2 1 0 0 0 2 0 1 1 1 0 1 0 0 3 0 1 1 0 0 17 1 1839.9479 P49327;A0A0U1RQF0 P49327 241 257 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 3.2401E-40 205.3 By MS/MS By MS/MS 4 5 1.3573 1.2927 17.977 9 Median 0.98745 1.0038 7.1371 4 0 Median 1.4786 1.3801 6.6713 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96716000 43848000 52868000 64398000 31849000 32549000 32318000 11999000 20319000 0 0 0 0 0 0 0 0 0 0 0 0 29246 2377 30750 153110;153111;153112;153113;153114;153115;153116;153117;153118 153928;153929;153930;153931;153932;153933;153934;153935;153936 153933 9 RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIR EGVVAVLLTKKSLARRVYATILNAGTNTDG GVTFPSGDIQEQLIRSLYQSAGVAPESFEY R R V I R S 2 2 2 2 0 3 2 4 0 3 2 1 0 2 1 1 4 0 1 2 0 0 34 2 3737.9013 P49327;A0A0U1RQF0 P49327 241 274 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 4 0.050194 8.9861 By MS/MS By matching 1 1 0.96197 1.035 10.473 2 Median 0.94198 0.96111 NaN 1 0 Median 0.98238 1.1145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4847000 2400000 2447000 4541800 2250600 2291100 305270 149410 155860 0 0 0 0 0 0 0 0 0 0 0 0 29247 2377 30751 153119;153120 153937 153937 1 RVYEILR IEAQQKFKINKQHARRVYEILRLLVTDMSD KINKQHARRVYEILRLLVTDMSDAEQYRSY R R V L R L 0 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 1 947.55525 O14929 O14929 330 336 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 2 0.022231 70.919 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2892 1.2267 24.008 5 Median 1.2147 1.2267 NaN 1 0 Median 1.2478 1.1451 2.145 2 0 Median 1.2944 1.4014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9046 2.0274 NaN 1 1 Median NaN NaN NaN 0 0 Median 34861000 15569000 19292000 13355000 6249300 7106100 15883000 6965200 8917400 4052100 1698900 2353200 0 0 0 1571200 656060 915170 0 0 0 29248 1504 30752 153121;153122;153123;153124;153125 153938;153939;153940;153941;153942;153943 153942 6 RVYFSDR IETLRVQIHANCRIRRVYFSDRLYSEDELP IHANCRIRRVYFSDRLYSEDELPAEFKLYL R R V D R L 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 7 1 941.47191 Q9Y6A4 Q9Y6A4 164 170 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.030832 58.815 By matching By MS/MS 1 1 0.94301 0.99277 16.22 2 Median 0.82811 0.88519 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0739 1.1134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2731900 1283700 1448300 711960 356170 355790 0 0 0 2020000 927520 1092500 0 0 0 0 0 0 0 0 0 29249 4486 30753 153126;153127 153944;153945 153945 2 RVYGDIIHTPAK LYSAFFLEWFSEEARRVYGDIIHTPAKDRR EARRVYGDIIHTPAKDRRALVLKQPIGVAA R R V A K D 1 1 0 1 0 0 0 1 1 2 0 1 0 0 1 0 1 0 1 1 0 0 12 1 1368.7514 P51649;C9J8Q5 P51649 173 184 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 3 0.00030241 55.04 By MS/MS By MS/MS By matching 1 1 1 1.4352 1.433 37.849 3 Median 1.4352 1.433 NaN 1 0 Median 1.9205 1.7545 NaN 1 0 Median 0.83258 0.84308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9231300 3569700 5661600 5253900 1899000 3354900 2649900 979050 1670900 1327500 691670 635810 0 0 0 0 0 0 0 0 0 29250 2439 30754 153128;153129;153130 153946;153947;153948;153949 153947 4 RVYLTTQLK SGVSKKVEPSDPVARRVYLTTQLKQKKSTL SDPVARRVYLTTQLKQKKSTLASVNIQALP R R V L K Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 1 0 0 9 1 1120.6604 Q9UNY4 Q9UNY4 414 422 TTF2 Transcription termination factor 2 yes yes 2 0.048326 35.295 By matching By matching By matching By MS/MS 1 1 1 1 1.2066 1.1159 24.33 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5683 1.7901 NaN 1 0 Median 1.1777 1.1318 NaN 1 0 Median 0.99167 1.1002 NaN 1 0 Median 1.2363 1.0758 NaN 1 0 Median 7073700 3087600 3986000 0 0 0 0 0 0 1576300 557200 1019100 1689100 757980 931130 1810100 806630 1003500 1998100 965820 1032300 29251 4352 30755 153131;153132;153133;153134 153950 153950 1 RVYVSGLMK EDFVLVAETTMARIRRVYVSGLMKGGADLF TMARIRRVYVSGLMKGGADLFVENMPGFPD R R V M K G 0 1 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 1 2 0 0 9 1 1051.5848 Q9HDC9;H0Y512 Q9HDC9 283 291 APMAP Adipocyte plasma membrane-associated protein yes no 2 0.011176 60.59 By MS/MS 1 1.0534 0.96198 NaN 1 Median NaN NaN NaN 0 0 Median 1.0534 0.96198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3852900 2075200 1777700 0 0 0 3852900 2075200 1777700 0 0 0 0 0 0 0 0 0 0 0 0 29252 4039 30756 153135 153951 153951 1 RWDELETTTQAK ELKALVSEKLRDLHRRWDELETTTQAKARS LHRRWDELETTTQAKARSLFDANRAELFAQ R R W A K A 1 1 0 1 0 1 2 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 12 1 1476.7209 O15020 O15020 1364 1375 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00029356 97.456 By MS/MS 1 1.2025 1.4412 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2025 1.4412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4700000 2171400 2528600 0 0 0 0 0 0 4700000 2171400 2528600 0 0 0 0 0 0 0 0 0 29253 1512 30757 153136 153952 153952 1 RWDQTADQTPGATPK VNGAAASQPPSKRKRRWDQTADQTPGATPK RWDQTADQTPGATPKKLSSWDQAETPGHTP R R W P K K 2 1 0 2 0 2 0 1 0 0 0 1 0 0 2 0 3 1 0 0 0 0 15 1 1670.8012 O75533 O75533 199 213 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 8.2414E-05 80.979 By MS/MS By MS/MS By matching 2 3 1 0.91065 0.85953 33.232 6 Median NaN NaN NaN 0 0 Median 0.91065 0.85953 9.2403 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59877 0.66454 34.11 3 0 Median 1.6975 1.4879 NaN 1 0 Median 16829000 9811900 7017200 0 0 0 6011000 3200200 2810800 0 0 0 0 0 0 10000000 6231600 3768800 817660 380080 437580 29254 1683 30758 153137;153138;153139;153140;153141;153142 153953;153954;153955;153956;153957 153956 5 RWEEVQSYIR QAATQLKVQLQEAERRWEEVQSYIRKRTAE QEAERRWEEVQSYIRKRTAEHEAAQQDLQS R R W I R K 0 2 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 10 1 1364.6837 Q86UP2 Q86UP2 496 505 KTN1 Kinectin yes yes 2 4.4416E-12 150.1 By MS/MS 1 1.2449 1.3314 NaN 1 Median 1.2449 1.3314 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12341000 5553700 6786800 12341000 5553700 6786800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29255 3280 30759 153143 153958 153958 1 RWEVADLQPQLK LMEFLLNVTTAPEFRRWEVADLQPQLKIDK EFRRWEVADLQPQLKIDKAVAFQNPQTHVI R R W L K I 1 1 0 1 0 2 1 0 0 0 2 1 0 0 1 0 0 1 0 1 0 0 12 1 1481.7991 P22695;H3BRG4;H3BSJ9;H3BP04 P22695 148 159 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 0.0029325 70.1 By MS/MS 1 0.83824 0.83648 NaN 1 Median 0.83824 0.83648 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6876300 3404600 3471700 6876300 3404600 3471700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29256 2105 30760 153144 153959 153959 1 RWFGFLEAQQAFQSVGTK WQEQLKQKKAPVHVKRWFGFLEAQQAFQSV GFLEAQQAFQSVGTKWDVSTTKARVAPEKK K R W T K W 2 1 0 0 0 3 1 2 0 0 1 1 0 3 0 1 1 1 0 1 0 0 18 1 2099.0589 P07814;V9GYZ6;V9GZ76 P07814 149 166 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 2.221E-05 48.053 By MS/MS 1 1.0662 1.091 NaN 1 Median 1.0662 1.091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1893500 908210 985270 1893500 908210 985270 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29257 1892 30761 153145 153960;153961 153961 2 RWLPAGDALLQMITIHLPSPVTAQK DKDKEGKPLLKAVMRRWLPAGDALLQMITI QMITIHLPSPVTAQKYRCELLYEGPPDDEA R R W Q K Y 3 1 0 1 0 2 0 1 1 2 4 1 1 0 3 1 2 1 0 1 0 0 25 1 2755.5207 P13639 P13639 342 366 EEF2 Elongation factor 2 yes yes 3 4.063E-36 135.72 By MS/MS 1 0.5655 0.56148 NaN 1 Median NaN NaN NaN 0 0 Median 0.5655 0.56148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9038700 5746200 3292500 0 0 0 9038700 5746200 3292500 0 0 0 0 0 0 0 0 0 0 0 0 29258 1992 30762 153146 153962;153963 153963 2 RWQLSVATEQPELEGPR TASVTEIQEKWHDSRRWQLSVATEQPELEG QLSVATEQPELEGPREGYGGFRGQREGSRG R R W P R E 1 2 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 17 1 1995.0174 Q9NR30 Q9NR30 702 718 DDX21 Nucleolar RNA helicase 2 yes yes 3 2.3224E-19 127.83 By MS/MS By MS/MS 1 1 1.3697 1.5347 76.914 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.288 2.6438 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.81996 0.8909 NaN 1 0 Median NaN NaN NaN 0 0 Median 19007000 7834200 11173000 0 0 0 0 0 0 16184000 6112600 10071000 0 0 0 2823000 1721500 1101500 0 0 0 29259 4076 30763 153147;153148 153964;153965 153964 2 RWSQLLANSAAR VQSKAIEARHASLMKRWSQLLANSAARKKK LMKRWSQLLANSAARKKKLLEAQSHFRKVE K R W A R K 3 2 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 1 0 0 0 0 12 1 1371.7371 A0A0D9SF54;Q13813 Q13813 2064 2075 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00056868 79.82 By MS/MS By MS/MS By matching 1 1 1 1.0194 1.0955 19.383 3 Median NaN NaN NaN 0 0 Median 1.45 1.3591 NaN 1 0 Median 0.86719 1.0955 NaN 1 0 Median 1.0194 0.9231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12036000 5503000 6533300 0 0 0 4065700 1546700 2519000 7113300 3557100 3556300 857280 399220 458050 0 0 0 0 0 0 29260 264;2838 30764 153149;153150;153151 153966;153967 153966 2 RWTDENIDTVALK ALRLFQDRLVEDEERRWTDENIDTVALKHF ERRWTDENIDTVALKHFPNIDREKAMSRPI R R W L K H 1 1 1 2 0 0 1 0 0 1 1 1 0 0 0 0 2 1 0 1 0 0 13 1 1559.7944 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2844 2856 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.0397E-06 113.63 By MS/MS By MS/MS 1 2 1.1433 1.3242 28.434 3 Median NaN NaN NaN 0 0 Median 1.5994 1.4835 NaN 1 0 Median 0.92405 1.0703 30.106 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22462000 11057000 11406000 0 0 0 9559200 4579800 4979400 12903000 6477100 6426200 0 0 0 0 0 0 0 0 0 29261 2865 30765 153152;153153;153154 153968;153969;153970;153971 153969 4 RYAVPSAGLR FNFVLKAIRPQIDLKRYAVPSAGLRLFALH QIDLKRYAVPSAGLRLFALHASQFSTCLLD K R Y L R L 2 2 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 10 1 1088.6091 P78527 P78527 264 273 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00067818 119.62 By MS/MS By MS/MS By matching 1 1 1 0.96735 1.0512 16.688 3 Median 0.96735 1.0512 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73725 0.81024 NaN 1 0 Median 1.1866 1.1058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14347000 8015800 6331100 4356900 2336700 2020200 0 0 0 8997500 5272500 3725000 992530 406610 585920 0 0 0 0 0 0 29262 2647 30766 153155;153156;153157 153972;153973;153974;153975 153973 4 RYDDPEVQK NPNNTFYATKRLIGRRYDDPEVQKDIKNVP KRLIGRRYDDPEVQKDIKNVPFKIVRASNG R R Y Q K D 0 1 0 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 1 1148.5462 P38646;A0A3B3ITI4;D6RJI2 P38646 127 135 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.00067877 122.19 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1409 1.1237 9.7134 4 Median 0.99463 0.99907 NaN 1 0 Median 1.3365 1.2163 NaN 1 0 Median 0.99193 1.0525 NaN 1 0 Median 1.3086 1.1998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25685000 12030000 13656000 5373300 2784100 2589300 15615000 7049600 8565500 4428600 2080600 2348000 268410 115480 152930 0 0 0 0 0 0 29263 2277 30767 153158;153159;153160;153161 153976;153977;153978;153979;153980;153981;153982;153983 153983 8 RYDDPEVQKDIK NPNNTFYATKRLIGRRYDDPEVQKDIKNVP IGRRYDDPEVQKDIKNVPFKIVRASNGDAW R R Y I K N 0 1 0 3 0 1 1 0 0 1 0 2 0 0 1 0 0 0 1 1 0 0 12 2 1504.7522 P38646;A0A3B3ITI4;D6RJI2 P38646 127 138 HSPA9 Stress-70 protein, mitochondrial yes no 3 0.00019558 71.558 By MS/MS By matching By matching By matching 2 1 1 1 1.1088 1.0589 34.697 5 Median 0.93859 1.0249 4.6123 2 0 Median 1.1088 1.0548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.324 1.5603 NaN 1 0 Median 2.1704 2.2267 NaN 1 0 Median 24428000 12503000 11925000 20399000 10828000 9570300 1771200 797310 973860 0 0 0 0 0 0 1793400 692880 1100500 465280 184520 280770 29264 2277 30768 153162;153163;153164;153165;153166 153984;153985;153986;153987 153987 4 RYDGLKYDVK SGFRLLNLKNDSLRKRYDGLKYDVKKVEEV DSLRKRYDGLKYDVKKVEEVVYDLSIRGFN K R Y V K K 0 1 0 2 0 0 0 1 0 0 1 2 0 0 0 0 0 0 2 1 0 0 10 2 1255.6561 E9PGT1;Q15631 E9PGT1 189 198 TSN Translin yes no 3 0.0049956 38.634 By MS/MS 1 1.4344 1.5273 NaN 1 Median 1.4344 1.5273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2858800 1117800 1740900 2858800 1117800 1740900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29265 925 30769 153167 153988;153989 153989 2 RYDGSQQALDLK LKPEQVEQLKLIMSKRYDGSQQALDLKGLR MSKRYDGSQQALDLKGLRSDPDLVAQNIDV K R Y L K G 1 1 0 2 0 2 0 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 1 1392.6997 Q9UBU9;E9PIN3;B4E227 Q9UBU9 219 230 NXF1 Nuclear RNA export factor 1 yes no 2;3 8.106E-05 88.681 By matching By MS/MS By MS/MS 1 2 2 0.93638 0.9457 19.738 5 Median NaN NaN NaN 0 0 Median 0.88411 0.814 NaN 1 0 Median 1.0556 1.1207 16.998 2 0 Median 0.92553 0.84862 15.318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15885000 7319000 8565900 0 0 0 1367400 660320 707050 12680000 5686100 6994200 1837300 972620 864650 0 0 0 0 0 0 29266 4249 30770 153168;153169;153170;153171;153172 153990;153991;153992;153993 153991 4 RYDLEQGLGDLLTER RYWSQFDENIRIILKRYDLEQGLGDLLTER RYDLEQGLGDLLTERKALVVPEPEPDSDSN K R Y E R K 0 2 0 2 0 1 2 2 0 0 4 0 0 0 0 0 1 0 1 0 0 0 15 1 1776.9006 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 110 124 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 3 0.00020642 45.33 By matching By MS/MS 1 1 0.84983 0.98786 43.667 2 Median 0.65294 0.72544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1061 1.3452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1802700 862820 939890 375780 234000 141780 0 0 0 1426900 628820 798100 0 0 0 0 0 0 0 0 0 29267 3112 30771 153173;153174 153994 153994 1 RYDLSALVR KEKEDLLCGATDGKKRYDLSALVRHAEPEQ ATDGKKRYDLSALVRHAEPEQNWEAVDGSQ K R Y V R H 1 2 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 1 1091.6087 P11717 P11717 483 491 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.059009 48.423 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29268 1969 30772 153175 153995 153995 1 RYEDQELTGK ERREKEMLERLEKQKRYEDQELTGKNLPAF LEKQKRYEDQELTGKNLPAFRLVDTPEGLP K R Y G K N 0 1 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1237.5939 Q9UIG0 Q9UIG0 579 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0053582 55.567 By MS/MS 1 0.96434 1.0902 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96434 1.0902 NaN 1 0 Median NaN NaN NaN 0 0 Median 3673700 1801000 1872700 0 0 0 0 0 0 0 0 0 0 0 0 3673700 1801000 1872700 0 0 0 29269 4290 30773 153176 153996 153996 1 RYEEELEINDFPQTAR QEEERQDGGQNESFKRYEEELEINDFPQTA YEEELEINDFPQTARWKVTSKEALQRISEY K R Y A R W 1 2 1 1 0 1 4 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 16 1 2008.949 Q7L014;A0A0C4DG89 Q7L014 931 946 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 1.42E-09 136.81 By MS/MS 2 0.99627 1.1974 7.7989 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99627 1.1974 7.7989 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12920000 6703600 6216100 0 0 0 0 0 0 12920000 6703600 6216100 0 0 0 0 0 0 0 0 0 29270 3216 30774 153177;153178 153997;153998 153998 2 RYEEILDAREEEMTAK KKIAEKDDDLKRTAKRYEEILDAREEEMTA YEEILDAREEEMTAKVRDLQTQLEELQKKY K R Y A K V 2 2 0 1 0 0 5 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 16 2 1981.9415 Q13439;H0Y6I0 Q13439 2058 2073 GOLGA4 Golgin subfamily A member 4 yes no 3 0.071535 9.6577 By MS/MS 1 1.5679 1.5998 NaN 1 Median 1.5679 1.5998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4382800 1682700 2700100 4382800 1682700 2700100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29271 1156 30775 153179 153999 153999 1 RYEEIYLK LVTSNGLPEVENLSKRYEEIYLKNKDLDAR EVENLSKRYEEIYLKNKDLDARLFLDHDKT K R Y L K N 0 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 8 1 1112.5866 A0A3B3IS71;P06400 A0A3B3IS71 320 327 RB1 Retinoblastoma-associated protein yes no 2 0.013582 60.59 By MS/MS By MS/MS 2 1 1.1333 1.2139 17.054 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97192 1.1146 23.089 2 0 Median 1.2632 1.2139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11989000 5717600 6271700 0 0 0 0 0 0 9550800 4755800 4795000 2438500 961840 1476700 0 0 0 0 0 0 29272 421 30776 153180;153181;153182 154000;154001;154002 154001 3 RYEEQELKEK WKEEDRKPERKESSRRYEEQELKEKVSSVD KESSRRYEEQELKEKVSSVDKQREQTEILE R R Y E K V 0 1 0 0 0 1 4 0 0 0 1 2 0 0 0 0 0 0 1 0 0 0 10 2 1350.6779 Q5T200 Q5T200 904 913 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 3 0.054293 17.809 By MS/MS By matching 2 1 0.83109 1.098 15.494 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76709 0.94119 21.795 2 0 Median NaN NaN NaN 0 0 Median 0.82305 0.96758 NaN 1 0 Median NaN NaN NaN 0 0 Median 2358900 1225600 1133300 0 0 0 0 0 0 1960000 1019800 940190 0 0 0 398820 205720 193100 0 0 0 29273 3082 30777 153183;153184;153185 154003 154003 1 RYELPAPSSGQK ERLAARQPIELLSMKRYELPAPSSGQKNDI SMKRYELPAPSSGQKNDITAWQECVNNSMA K R Y Q K N 1 1 0 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 1 0 0 0 12 1 1331.6834 O75934 O75934 86 97 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3 0.00033749 65.241 By MS/MS By MS/MS 2 1 0.7069 0.71608 2.1194 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69441 0.71927 2.9753 2 0 Median 0.80894 0.71608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11031000 6015100 5015700 0 0 0 0 0 0 9784500 5338300 4446100 1246300 676720 569570 0 0 0 0 0 0 29274 1707 30778 153186;153187;153188 154004;154005;154006;154007;154008 154007 5 RYEMLQDNVEGYR SQNTKISTQLDFASKRYEMLQDNVEGYRRE SKRYEMLQDNVEGYRREITSLHERNQKLTA K R Y Y R R 0 2 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 2 1 0 0 13 1 1671.7675 P12270 P12270 724 736 TPR Nucleoprotein TPR yes yes 3 0.0028719 50.563 By matching By MS/MS By MS/MS 1 2 2 1.0104 0.95545 16.586 5 Median NaN NaN NaN 0 0 Median 1.1606 1.172 NaN 1 0 Median 0.75806 0.8932 24.418 2 0 Median 1.0325 0.9485 1.0323 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12410000 5854700 6555500 0 0 0 2555700 1054300 1501400 7509800 3740400 3769400 2344700 1060000 1284700 0 0 0 0 0 0 29275 1978 30779 153189;153190;153191;153192;153193 154009;154010 154010 1 RYEMLQDNVEGYRR SQNTKISTQLDFASKRYEMLQDNVEGYRRE KRYEMLQDNVEGYRREITSLHERNQKLTAT K R Y R R E 0 3 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 2 1 0 0 14 2 1827.8686 P12270 P12270 724 737 TPR Nucleoprotein TPR yes yes 3;4 5.3343E-09 108.17 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 3 1.0654 1.1904 21.682 13 Median 1.0729 1.1913 10.817 4 0 Median 1.1364 1.169 24.633 2 0 Median 0.91325 1.0245 9.6924 4 0 Median 1.4505 1.6179 23.235 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150250000 74359000 75889000 44208000 21453000 22755000 21307000 10867000 10440000 78551000 39473000 39077000 6182300 2566400 3615900 0 0 0 0 0 0 29276 1978 30780 153194;153195;153196;153197;153198;153199;153200;153201;153202;153203;153204;153205;153206 154011;154012;154013;154014;154015;154016;154017;154018;154019;154020;154021 154013 10 RYETLVGTIGK DETVELDVSDEEMARRYETLVGTIGKKFAR EMARRYETLVGTIGKKFARKRDHANYEEDE R R Y G K K 0 1 0 0 0 0 1 2 0 1 1 1 0 0 0 0 2 0 1 1 0 0 11 1 1235.6874 H3BSB3;H3BNT4;Q99547 H3BSB3 88 98 MPHOSPH6 M-phase phosphoprotein 6 yes no 2 0.00021469 105.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1207 1.0315 6.6561 3 Median NaN NaN NaN 0 0 Median 1.1207 0.98887 NaN 1 0 Median 1.0782 1.1267 NaN 1 0 Median 1.1653 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16119000 7519300 8600100 0 0 0 3147800 1498900 1648900 11144000 5247900 5896200 1827500 772470 1055100 0 0 0 0 0 0 29277 1215 30781 153207;153208;153209;153210 154022;154023;154024;154025;154026;154027 154023 6 RYETLVGTIGKK DETVELDVSDEEMARRYETLVGTIGKKFAR MARRYETLVGTIGKKFARKRDHANYEEDEN R R Y K K F 0 1 0 0 0 0 1 2 0 1 1 2 0 0 0 0 2 0 1 1 0 0 12 2 1363.7823 H3BSB3;H3BNT4;Q99547 H3BSB3 88 99 MPHOSPH6 M-phase phosphoprotein 6 yes no 3 0.00019256 73.466 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1821 1.2272 11.953 5 Median 1.0273 1.0798 NaN 1 0 Median 1.3578 1.3893 NaN 1 0 Median 1.0961 1.2272 NaN 1 0 Median 1.3183 1.0874 NaN 1 0 Median 1.1821 1.3618 NaN 1 0 Median NaN NaN NaN 0 0 Median 25549000 12009000 13540000 3451100 1600200 1850900 2313900 1010000 1303800 12989000 6100400 6888400 4265300 2103900 2161400 2529700 1194400 1335400 0 0 0 29278 1215 30782 153211;153212;153213;153214;153215 154028;154029;154030;154031;154032;154033;154034 154030 7 RYFDGSGGNNHAVEHYR NLWLNLTDGSILCGRRYFDGSGGNNHAVEH FDGSGGNNHAVEHYRETGYPLAVKLGTITP R R Y Y R E 1 2 2 1 0 0 1 3 2 0 0 0 0 1 0 1 0 0 2 1 0 0 17 1 1977.883 P45974 P45974 222 238 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 4 0.011859 25.054 By MS/MS By matching 1 1 1.0606 1.112 8.8225 2 Median 0.94035 1.0448 NaN 1 0 Median 1.1963 1.1836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1842100 669080 1173000 1353500 517140 836330 488600 151940 336660 0 0 0 0 0 0 0 0 0 0 0 0 29279 2332 30783 153216;153217 154035 154035 0 RYFGGTEDR AHDDGRWSLQSEAHRRYFGGTEDRLSCFAQ QSEAHRRYFGGTEDRLSCFAQTVSPAEKWS R R Y D R L 0 2 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 1 0 0 0 9 1 1099.5047 Q16658 Q16658 110 118 FSCN1 Fascin yes yes 2 0.0030558 73.985 By matching By MS/MS 1 1 1.1006 1.0503 5.2511 2 Median 1.0021 1.012 NaN 1 0 Median 1.2087 1.09 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3562000 1480200 2081800 671960 308780 363180 2890100 1171500 1718600 0 0 0 0 0 0 0 0 0 0 0 0 29280 2993 30784 153218;153219 154036 154036 1 RYGDFFIR IDKDMIHIADTKVARRYGDFFIRQIHKFEE ADTKVARRYGDFFIRQIHKFEELNRTLKKM R R Y I R Q 0 2 0 1 0 0 0 1 0 1 0 0 0 2 0 0 0 0 1 0 0 0 8 1 1072.5454 B0QY89;Q9Y262;B0QY90;H0Y7E6 B0QY89 581 588 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00067196 98.299 By MS/MS 1 1.121 1.1044 NaN 1 Median 1.121 1.1044 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23563000 11508000 12055000 23563000 11508000 12055000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29281 554 30785 153220 154037 154037 1 RYHGYQLVDGGR CPECFSAGAEIGHHRRYHGYQLVDGGRFTL HHRRYHGYQLVDGGRFTLWGPEAEGGWTSR R R Y G R F 0 2 0 1 0 1 0 3 1 0 1 0 0 0 0 0 0 0 2 1 0 0 12 1 1419.7007 Q86TJ2 Q86TJ2 47 58 TADA2B Transcriptional adapter 2-beta yes yes 3 0.0011292 42.809 By MS/MS 1 0.7881 0.8533 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7881 0.8533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1084400 573840 510600 0 0 0 0 0 0 1084400 573840 510600 0 0 0 0 0 0 0 0 0 29282 3267 30786 153221 154038 154038 1 RYIGIVK SVQRPGPYDRPGTARRYIGIVKQAGLERMR YDRPGTARRYIGIVKQAGLERMRPGAYSTG R R Y V K Q 0 1 0 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 1 1 0 0 7 1 847.52797 P52597 P52597 218 224 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 0.0080708 96.048 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 4 4 4 7 7 1.2071 1.0873 13.344 29 Median 1.0487 1.0469 14.123 3 0 Median 1.2325 1.1414 20.408 4 0 Median 1.0453 1.1064 16.803 4 0 Median 1.2118 1.1105 6.5375 4 0 Median 1.0008 1.0623 17.906 7 0 Median 1.253 1.0873 8.035 7 0 Median 198530000 95827000 102700000 7288400 3673900 3614500 12140000 5293800 6846700 30744000 15088000 15656000 26877000 12017000 14859000 93744000 47290000 46454000 27736000 12464000 15272000 29283 2452 30787 153222;153223;153224;153225;153226;153227;153228;153229;153230;153231;153232;153233;153234;153235;153236;153237;153238;153239;153240;153241;153242;153243;153244;153245;153246;153247;153248;153249;153250 154039;154040;154041;154042;154043;154044;154045;154046;154047;154048 154045 10 RYILPDEPAIIVHPNWAAK ERKRQEEIERQRRERRYILPDEPAIIVHPN PDEPAIIVHPNWAAKSGKFDCSIMSLSVLL R R Y A K S 3 1 1 1 0 0 1 0 1 3 1 1 0 0 3 0 0 1 1 1 0 0 19 1 2202.195 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;H0YFJ7 Q8IX12 720 738 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 3 1.7254E-05 46.159 By MS/MS 1 0.39659 0.44942 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39659 0.44942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9076100 6297800 2778300 0 0 0 0 0 0 9076100 6297800 2778300 0 0 0 0 0 0 0 0 0 29284 3331 30788 153251 154049;154050 154049 2 RYNFPVEVEVPMER EKNLLIFENLIDLKRRYNFPVEVEVPMERK RRYNFPVEVEVPMERKKKYIEIRKEAREAA R R Y E R K 0 2 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 3 0 0 14 1 1763.8665 P78527 P78527 1987 2000 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.277E-23 198.57 By MS/MS By MS/MS By MS/MS 4 1 4 0.65284 0.67392 33.459 9 Median 0.66589 0.72363 6.4538 4 0 Median 0.66932 0.62732 NaN 1 0 Median 0.55818 0.61344 52.989 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102380000 60174000 42202000 45330000 26391000 18939000 4334500 2169600 2164800 52712000 31613000 21098000 0 0 0 0 0 0 0 0 0 29285 2647 30789;30790 153252;153253;153254;153255;153256;153257;153258;153259;153260 154051;154052;154053;154054;154055;154056;154057;154058;154059 154053 1335 9 RYNIPHGPVVGSTR NYADLSDTELTTLLRRYNIPHGPVVGSTRR RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R R Y T R R 0 2 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 14 1 1551.827 P50402 P50402 18 31 EMD Emerin yes yes 3 1.9833E-06 91.812 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 3 0.96092 0.87439 11.345 9 Median 0.72578 0.78135 NaN 1 0 Median 0.81098 0.74646 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0151 0.94726 NaN 1 0 Median 0.84501 0.91642 13.249 3 0 Median 0.98156 0.87439 2.033 3 1 Median 64093000 35336000 28757000 14609000 8189400 6419900 4087500 2116500 1971000 0 0 0 2184700 1206200 978500 35761000 19793000 15968000 7450400 4030900 3419500 29286 2412 30791 153261;153262;153263;153264;153265;153266;153267;153268;153269 154060;154061;154062;154063;154064;154065;154066;154067;154068;154069;154070 154061 11 RYNVPNSAIYK DHLECDLNLMFENAKRYNVPNSAIYKRVLK ENAKRYNVPNSAIYKRVLKLQQVMQAKKKE K R Y Y K R 1 1 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 11 1 1323.6935 Q86U86;E7EVG2;H0Y5B5 Q86U86 461 471 PBRM1 Protein polybromo-1 yes no 2 0.00027588 95.502 By MS/MS By MS/MS 1 1 0.62662 0.67422 5.7575 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58558 0.70223 NaN 1 0 Median 0.67053 0.64732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6911900 4059600 2852200 0 0 0 0 0 0 5584000 3315600 2268400 1327900 744000 583880 0 0 0 0 0 0 29287 3273 30792 153270;153271 154071;154072;154073 154072 3 RYQEALHLGSQLLR QALEARLVSLYFDTKRYQEALHLGSQLLRE KRYQEALHLGSQLLRELKKMDDKALLVEVQ K R Y L R E 1 2 0 0 0 2 1 1 1 0 4 0 0 0 0 1 0 0 1 0 0 0 14 1 1682.9216 O00231 O00231 142 155 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 3 0.00015848 64.394 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 1.2842 1.3248 23.43 6 Median 1.3871 1.4298 14.738 2 0 Median 1.2928 1.2073 NaN 1 0 Median 1.2582 1.3622 NaN 1 0 Median 0.86974 0.81127 NaN 1 0 Median 1.3553 1.4466 NaN 1 0 Median NaN NaN NaN 0 0 Median 36423000 16019000 20404000 24567000 10586000 13981000 784100 336560 447540 5388600 2483400 2905200 4736800 2262600 2474200 946850 349980 596870 0 0 0 29288 1448 30793 153272;153273;153274;153275;153276;153277 154074;154075 154074 1 RYQKSTELLIR PHRYRPGTVALREIRRYQKSTELLIRKLPF REIRRYQKSTELLIRKLPFQRLVREIAQDF R R Y I R K 0 2 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 11 2 1405.8041 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 54 64 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2;3 4.6679E-05 86.014 By MS/MS By MS/MS 7 6 0.98124 1.1275 13.883 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92116 1.1046 8.5112 7 1 Median 1.3184 1.148 16.902 6 0 Median 56469000 26118000 30350000 0 0 0 0 0 0 0 0 0 0 0 0 33868000 17263000 16605000 22601000 8855600 13746000 29289 1366;3104 30794 153278;153279;153280;153281;153282;153283;153284;153285;153286;153287;153288;153289;153290 154076;154077;154078;154079;154080;154081;154082;154083;154084;154085;154086;154087;154088;154089;154090;154091;154092;154093;154094 154084 19 RYSDFEWLR TNLPIFKLKESTVRRRYSDFEWLRSELERE ESTVRRRYSDFEWLRSELERESKVVVPPLP R R Y L R S 0 2 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 9 1 1270.6095 O60493 O60493 70 78 SNX3 Sorting nexin-3 yes yes 2 0.025748 49.813 By MS/MS 1 0.87633 0.91855 NaN 1 Median 0.87633 0.91855 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625900 1216400 1409500 2625900 1216400 1409500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29290 1616 30795 153291 154095 154095 1 RYTLNVLEDLGDGQK GNQTLTLALVWQLMRRYTLNVLEDLGDGQK RYTLNVLEDLGDGQKANDDIIVNWVNRTLS R R Y Q K A 0 1 1 2 0 1 1 2 0 0 3 1 0 0 0 0 1 0 1 1 0 0 15 1 1719.8792 P13797;A0A0A0MSQ0 P13797 504 518 PLS3 Plastin-3 yes no 2;3 5.5891E-14 178.32 By MS/MS By MS/MS By matching By matching 2 3 2 1 1.0445 1.0312 28.934 8 Median 1.0445 1.0459 2.4883 2 0 Median 1.2331 1.109 7.7064 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.289 1.2782 66.41 2 0 Median 0.98294 0.82609 NaN 1 0 Median 99770000 47297000 52472000 58875000 28302000 30573000 33713000 15507000 18206000 0 0 0 0 0 0 6164400 2993400 3171000 1017100 495010 522100 29291 1995 30796 153292;153293;153294;153295;153296;153297;153298;153299 154096;154097;154098;154099;154100;154101;154102 154099 7 RYTSLNHLAQAAR RVKVAAAGAFAQTLRRYTSLNHLAQAARAV LRRYTSLNHLAQAARAVLQNTAQINQMLSD R R Y A R A 3 2 1 0 0 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 13 1 1499.7957 P22670;P48378 P22670 750 762 RFX1;RFX2 MHC class II regulatory factor RFX1;DNA-binding protein RFX2 no no 3 0.0042593 32.068 By MS/MS By MS/MS 2 1 0.90358 1.0799 22.657 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0336 1.2253 17.864 2 0 Median 0.90358 0.8846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5535900 2735400 2800600 0 0 0 0 0 0 4516100 2349700 2166300 1019900 385620 634260 0 0 0 0 0 0 29292 2104 30797 153300;153301;153302 154103;154104;154105 154104 3 RYWEEETVPTTAGASPGPPR PPKKDKLQTKRKKPRRYWEEETVPTTAGAS ETVPTTAGASPGPPRNKKNRELRPQRPKNA R R Y P R N 2 2 0 0 0 0 3 2 0 0 0 0 0 0 4 1 3 1 1 1 0 0 20 1 2200.0549 O15213 O15213 27 46 WDR46 WD repeat-containing protein 46 yes yes 3 9.8035E-11 89.859 By MS/MS By MS/MS 1 1 0.53516 0.53038 25.07 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58283 0.63325 NaN 1 0 Median 0.4914 0.44422 NaN 1 0 Median 9983300 4917200 5066100 0 0 0 0 0 0 0 0 0 0 0 0 9229200 4458600 4770600 754110 458580 295530 29293 1531 30798 153303;153304 154106;154107;154108 154106 3 SAAAIALPPIAK PQKYGPDAFFNFPGKSAAAIALPPIAKWPY PGKSAAAIALPPIAKWPYQNGFTFHTWLRM K S A A K W 5 0 0 0 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 0 0 12 0 1121.6808 E9PEM5;A0A494C1L5;P50851;A0A494C0R9 E9PEM5 213 224 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.0025771 74.92 By MS/MS By MS/MS 2 1 0.81912 0.82011 18.109 3 Median 0.80223 0.80294 2.9921 2 2 Median 1.2575 1.0964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23115000 13032000 10083000 19008000 11162000 7846100 4107400 1870400 2237000 0 0 0 0 0 0 0 0 0 0 0 0 29294 470 30799 153305;153306;153307 154109;154110;154111 154110 3 SAADEVDGLGVARPHYGSVLDNER ______________________________ GVARPHYGSVLDNERLTAEEMDERRRQNVA M S A E R L 3 2 1 3 0 0 2 3 1 0 2 0 0 0 1 2 0 0 1 3 0 0 24 1 2526.2099 P46940;A0A0J9YXZ5;H0YLE8 P46940 2 25 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 2.0301E-56 198.64 By MS/MS By matching By MS/MS By matching 5 3 1 1 0.84885 0.89524 24.24 10 Median 0.8649 0.92493 9.0004 5 1 Median 0.83309 0.84129 32.985 3 0 Median 0.95508 1.2065 NaN 1 0 Median 0.78477 0.71066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 185510000 94372000 91134000 162600000 82553000 80050000 7528200 3822500 3705700 14772000 7683400 7088700 602400 312960 289440 0 0 0 0 0 0 29295 2350 30800 153308;153309;153310;153311;153312;153313;153314;153315;153316;153317 154112;154113;154114;154115;154116;154117;154118;154119;154120 154116 9 SAADLISQAR SQTNCPLYVTKVMSKSAADLISQARKKGNV KVMSKSAADLISQARKKGNVVFGEPITASL K S A A R K 3 1 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1030.5407 Q14195 Q14195 259 268 DPYSL3 Dihydropyrimidinase-related protein 3 yes yes 2 0.00051808 117.89 By MS/MS By matching 1 1 0.31159 0.29641 162.4 2 Median 0.97615 0.93459 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.099458 0.09401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9958800 7134800 2824000 5046900 2590400 2456500 0 0 0 4911900 4544400 367540 0 0 0 0 0 0 0 0 0 29296 2864 30801 153318;153319 154121;154122 154122 2 SAADSISESVPVGPK DDLDAEAAMDISEGRSAADSISESVPVGPK SAADSISESVPVGPKVRDGPGKYQLFAFIS R S A P K V 2 0 0 1 0 0 1 1 0 1 0 1 0 0 2 4 0 0 0 2 0 0 15 0 1442.7253 P45974 P45974 779 793 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 1.1383E-07 142.08 By MS/MS By MS/MS 2 2 0.74649 0.68409 5.3002 4 Median 0.70668 0.67353 1.1861 2 0 Median 0.82576 0.71992 6.2043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48761000 28646000 20114000 38187000 22972000 15215000 10574000 5674300 4899300 0 0 0 0 0 0 0 0 0 0 0 0 29297 2332 30802 153320;153321;153322;153323 154123;154124;154125;154126;154127 154124 5 SAAEAGGVFHR ______________________________ ______________________________ M S A H R A 3 1 0 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 11 0 1100.5363 Q9BRF8 Q9BRF8 2 12 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes yes 2 6.4746E-15 187 By MS/MS By MS/MS By MS/MS 2 2 1 1.0698 1.0367 14.617 4 Median 1.116 1.0453 8.2332 2 0 Median NaN NaN NaN 0 0 Median 1.0902 1.0899 NaN 1 0 Median 0.96519 0.8062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62181000 28869000 33312000 60480000 28033000 32446000 0 0 0 110980 61439 49537 1590800 774750 816030 0 0 0 0 0 0 29298 3794 30803 153324;153325;153326;153327;153328 154128;154129;154130;154131;154132 154129 5 SAAEMYGSSFDLDYDFQR AAEPKVNRGKAGVKRSAAEMYGSSFDLDYD EMYGSSFDLDYDFQRDYYDRMYSYPARVPP R S A Q R D 2 1 0 3 0 1 1 1 0 0 1 0 1 2 0 3 0 0 2 0 0 0 18 0 2100.8735 B2R5W2;G3V4C1;B4DY08;G3V4W0;G3V2D6;G3V251;G3V3K6;G3V5X6 B2R5W2 100 117 HNRNPC yes no 2 1.595E-06 83.314 By MS/MS By matching By MS/MS By matching 2 1 4 3 1.0158 1.0458 10.715 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94932 0.96741 12.574 2 0 Median 1.4153 1.1998 NaN 1 0 Median 0.94313 1.0524 7.6195 4 0 Linear 1.3538 1.1142 7.1498 3 0 Median 16430000 8248700 8181000 0 0 0 0 0 0 3619800 1821900 1797900 158490 76826 81667 11195000 5645200 5549700 1456500 704780 751750 29299 582 30804;30805 153329;153330;153331;153332;153333;153334;153335;153336;153337;153338 154133;154134;154135;154136;154137;154138;154139;154140;154141 154135 227 9 SAAEMYGSSFDLDYDFQRDYYDR AAEPKVNRGKAGVKRSAAEMYGSSFDLDYD SFDLDYDFQRDYYDRMYSYPARVPPPPPIA R S A D R M 2 2 0 5 0 1 1 1 0 0 1 0 1 2 0 3 0 0 4 0 0 0 23 1 2813.1551 B2R5W2;G3V4C1;B4DY08;G3V4W0;G3V2D6;G3V251 B2R5W2 100 122 HNRNPC yes no 3 0.0082257 21.616 By MS/MS 1 1.1099 1.1846 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1099 1.1846 NaN 1 0 Median NaN NaN NaN 0 0 Median 4680900 2171400 2509600 0 0 0 0 0 0 0 0 0 0 0 0 4680900 2171400 2509600 0 0 0 29300 582 30806 153339 154142 154142 1 SAALPIFSSFVSNWDEATKR EKWESVKLLFVKTEKSAALPIFSSFVSNWD IFSSFVSNWDEATKRSLLNKKKKEARRKRR K S A K R S 3 1 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 20 1 2225.1117 O76021;J3QSV6;I3L3U9 O76021 258 277 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 5.8454E-11 93.269 By matching By MS/MS By MS/MS By matching 1 1 3 2 1.0294 1.049 22.915 7 Median 1.8283 1.8577 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94174 1.049 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0005 1.0944 3.6012 3 0 Median 1.0684 0.96641 6.7562 2 0 Median 23398000 11133000 12265000 823080 249530 573550 0 0 0 2278100 1082300 1195900 0 0 0 19856000 9596900 10259000 441070 204350 236720 29301 1716 30807 153340;153341;153342;153343;153344;153345;153346 154143;154144;154145;154146;154147;154148;154149 154147 7 SAAMLGNSEDHTALSR CHRKELSANTAAFAKSAAMLGNSEDHTALS AAMLGNSEDHTALSRALSQLAEVEEKIDQL K S A S R A 3 1 1 1 0 0 1 1 1 0 2 0 1 0 0 3 1 0 0 0 0 0 16 0 1658.7682 O60749 O60749 347 362 SNX2 Sorting nexin-2 yes yes 2;3 7.7816E-37 216.03 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.0646 1.0123 43.789 8 Median 1.0557 1.0182 7.1537 3 0 Median 1.2384 1.0729 43.709 3 0 Median 0.64163 0.64691 NaN 1 0 Median 0.56167 0.4888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65122000 30878000 34243000 39484000 19534000 19950000 20999000 8389200 12610000 2445400 1678100 767290 2193400 1277200 916180 0 0 0 0 0 0 29302 1629 30808;30809 153347;153348;153349;153350;153351;153352;153353;153354 154150;154151;154152;154153;154154;154155;154156;154157 154153 523 8 SAAMTLNER HIVSLVHHVKEQYFKSAAMTLNERFTSYQK KEQYFKSAAMTLNERFTSYQKATEEHSTRQ K S A E R F 2 1 1 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 9 0 991.47568 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91 Q9NYF8 623 631 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.0004831 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 2 1.0128 0.95574 13.699 8 Median 0.80378 0.80439 NaN 1 0 Median 0.97378 0.84595 6.9234 2 0 Median 0.92772 1.0087 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0187 1.0586 4.0947 2 0 Median 1.2286 1.0265 17.726 2 0 Median 23121000 11146000 11975000 1405700 740710 664960 4591700 2291200 2300500 1582900 812980 769890 0 0 0 11933000 5702600 6230200 3607700 1598200 2009500 29303 4175 30810 153355;153356;153357;153358;153359;153360;153361;153362 154158;154159;154160;154161;154162;154163;154164;154165;154166;154167;154168 154161 11 SAAPGSLGYQWLSDGSGVFEIAEASGVR YSAFMVADRVEVYSRSAAPGSLGYQWLSDG DGSGVFEIAEASGVRTGTKIIIHLKSDCKE R S A V R T 4 1 0 1 0 1 2 5 0 1 2 0 0 1 1 5 0 1 1 2 0 0 28 0 2810.3511 I3L0K7;I3L239;I3L2D5;Q12931 Q12931 221 248 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 0.01132 24.538 By MS/MS By matching 2 1 0.92108 0.93329 7.5738 3 Median 0.91808 0.93041 0.43788 2 0 Median 1.2081 1.0607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3310600 1731300 1579300 2650300 1425800 1224600 660290 305530 354760 0 0 0 0 0 0 0 0 0 0 0 0 29304 2771;1269 30811 153363;153364;153365 154169;154170 154170 2 SAAPSTLDSSSTAPAQLGK QQQLEKELNTLRVTRSAAPSTLDSSSTAPA STLDSSSTAPAQLGKKGKEFEFSQLPLKVE R S A G K K 4 0 0 1 0 1 0 1 0 0 2 1 0 0 2 5 2 0 0 0 0 0 19 0 1787.8901 Q9Y5M8;H7C4H2 Q9Y5M8 209 227 SRPRB Signal recognition particle receptor subunit beta yes no 2 1.989E-13 107.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 1 1 0.89649 0.81353 13.27 9 Median 0.88638 0.81456 0.18036 2 0 Median 0.8511 0.71381 NaN 1 0 Median 0.87264 0.81844 NaN 1 0 Median 0.91576 0.75902 11.329 3 0 Median 1.0876 1.1177 NaN 1 0 Median 0.95615 0.80401 NaN 1 0 Median 66145000 33451000 32694000 37137000 18824000 18313000 7288100 3976100 3312000 9834900 4838600 4996300 6404700 3092300 3312400 3298900 1684300 1614600 2181600 1035900 1145700 29305 4463 30812 153366;153367;153368;153369;153370;153371;153372;153373;153374 154171;154172;154173;154174;154175;154176;154177;154178;154179;154180;154181;154182;154183;154184 154173 14 SAAPSTLDSSSTAPAQLGKK QQQLEKELNTLRVTRSAAPSTLDSSSTAPA TLDSSSTAPAQLGKKGKEFEFSQLPLKVEF R S A K K G 4 0 0 1 0 1 0 1 0 0 2 2 0 0 2 5 2 0 0 0 0 0 20 1 1915.9851 Q9Y5M8;H7C4H2 Q9Y5M8 209 228 SRPRB Signal recognition particle receptor subunit beta yes no 3 8.2903E-06 43.116 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3309 1.353 22.719 4 Median 1.4234 1.3884 NaN 1 0 Median 1.7192 1.5722 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0276 0.9256 NaN 1 0 Median 1.2443 1.3184 NaN 1 0 Median NaN NaN NaN 0 0 Median 17001000 6873200 10128000 5744200 2138200 3606000 3793200 1336900 2456300 0 0 0 5457700 2586200 2871500 2005800 811970 1193800 0 0 0 29306 4463 30813 153375;153376;153377;153378 154185;154186;154187;154188 154188 3 SAAQAAAQTNSNAAGK KKEAGGGGVGGPGAKSAAQAAAQTNSNAAG AAQAAAQTNSNAAGKQLRKESQKDRKNPLP K S A G K Q 7 0 2 0 0 2 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 16 0 1459.7015 Q8NC51 Q8NC51 53 68 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0021366 37.426 By matching By MS/MS By matching By matching 1 1 2 1 1.0546 1.026 3.7888 5 Median 1.0439 1.026 NaN 1 0 Median 1.1406 0.9898 NaN 1 0 Median 1.0539 1.0649 2.0403 2 0 Median 1.129 0.99003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4340400 2020700 2319700 1122800 552080 570740 1402900 618950 783920 1434900 681950 752980 379780 167700 212080 0 0 0 0 0 0 29307 3414 30814 153379;153380;153381;153382;153383 154189;154190 154190 2 SAAQLSLSSR TARWHLRAQDLHAERSAAQLSLSSRLQLTL LHAERSAAQLSLSSRLQLTLYQYKTCPFCS R S A S R L 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 4 0 0 0 0 0 0 10 0 1018.5407 Q9H7Z7 Q9H7Z7 90 99 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes yes 2 4.6836E-07 160.59 By MS/MS By MS/MS 1 1 1.3217 1.1647 11.489 2 Median 1.15 1.0739 NaN 1 0 Median 1.519 1.2633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18572000 7854200 10718000 8085000 3898700 4186300 10487000 3955500 6531300 0 0 0 0 0 0 0 0 0 0 0 0 29308 3985 30815 153384;153385 154191;154192;154193;154194 154193 4 SAAQMEVASFLLSK TTPSKPGGDRYIPHRSAAQMEVASFLLSKE RSAAQMEVASFLLSKENQPENSQTPTKKEH R S A S K E 3 0 0 0 0 1 1 0 0 0 2 1 1 1 0 3 0 0 0 1 0 0 14 0 1480.7596 Q12834 Q12834 84 97 CDC20 Cell division cycle protein 20 homolog yes yes 2 0.00025386 70.977 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29309 2763 30816 153386 154195 154195 1 SAAQPSTSPAEVQSLKK NELEKFRKSEEGKQRSAAQPSTSPAEVQSL AQPSTSPAEVQSLKKAMSSLQNDRDRLLKE R S A K K A 3 0 0 0 0 2 1 0 0 0 1 2 0 0 2 4 1 0 0 1 0 0 17 1 1727.9054 Q14789 Q14789 2865 2881 GOLGB1 Golgin subfamily B member 1 yes yes 3 5.0863E-06 62.203 By MS/MS By MS/MS 1 1 0.8504 0.86353 16.304 2 Median 0.71117 0.7695 NaN 1 0 Median 1.0169 0.96904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8086300 4098500 3987800 2450500 1424500 1026100 5635700 2674000 2961700 0 0 0 0 0 0 0 0 0 0 0 0 29310 2900 30817 153387;153388 154196;154197;154198;154199 154199 4 SAASFGSFHLIR WSFYSSMVIRDLTLRSAASFGSFHLIRLLY TLRSAASFGSFHLIRLLYDEYMYYLIEHRV R S A I R L 2 1 0 0 0 0 0 1 1 1 1 0 0 2 0 3 0 0 0 0 0 0 12 0 1291.6673 P22670;P48378;H0Y7W5 P22670 868 879 RFX1;RFX2;RFX3 MHC class II regulatory factor RFX1;DNA-binding protein RFX2 no no 3 0.0074189 29.544 By MS/MS 2 1.0744 1.1649 17.311 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0744 1.1649 17.311 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5138800 2381500 2757300 0 0 0 0 0 0 5138800 2381500 2757300 0 0 0 0 0 0 0 0 0 29311 2104 30818 153389;153390 154200 154200 1 SAATLITHPFHVITLR FDHVIKETTREMIARSAATLITHPFHVITL AATLITHPFHVITLRSMVQFIGRESKYCGL R S A L R S 2 1 0 0 0 0 0 0 2 2 2 0 0 1 1 1 3 0 0 1 0 0 16 0 1776.0046 Q9Y6C9;E9PIE4 Q9Y6C9 132 147 MTCH2 Mitochondrial carrier homolog 2 yes no 2;3;4 4.7555E-08 132.76 By MS/MS By matching By matching By matching By matching 5 3 2 1 5 1.0218 0.91596 26.362 16 Median 0.984 0.91853 23.417 5 0 Median 0.89331 0.76362 26.475 3 0 Median 0.76712 0.74092 29.596 2 0 Median 1.121 0.94324 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1839 0.99588 29.32 5 0 Median 148080000 71073000 77010000 136660000 65801000 70861000 3785000 1789700 1995300 2681100 1349300 1331800 297560 128760 168800 0 0 0 4657800 2004900 2653000 29312 4488 30819 153391;153392;153393;153394;153395;153396;153397;153398;153399;153400;153401;153402;153403;153404;153405;153406 154201;154202;154203;154204;154205 154201 5 SAATSGAGSTTSGVVSGSLGSR EDPCTLRHTMEKVVRSAATSGAGSTTSGVV GSTTSGVVSGSLGSREINYILRVLGPAACR R S A S R E 3 1 0 0 0 0 0 5 0 0 1 0 0 0 0 7 3 0 0 2 0 0 22 0 1895.9185 Q7Z6Z7 Q7Z6Z7 1844 1865 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 1.0842E-142 279.24 By MS/MS By MS/MS By matching By matching 4 4 1 1 1.102 0.97931 16.749 10 Median 1.0047 0.96 13.256 4 0 Median 1.2725 1.0168 17.28 4 1 Median 1.1875 1.3011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2104 1.0093 NaN 1 0 Median 201350000 95456000 105890000 105220000 53163000 52058000 91501000 40190000 51310000 3133300 1368000 1765200 0 0 0 0 0 0 1496100 734850 761230 29313 3253 30820 153407;153408;153409;153410;153411;153412;153413;153414;153415;153416 154206;154207;154208;154209;154210;154211;154212;154213;154214;154215;154216;154217;154218 154215 13 SAATWDER DEVEKLIKRHEAFEKSAATWDERFSALERL RHEAFEKSAATWDERFSALERLTTLELLEV K S A E R F 2 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 8 0 934.41446 Q01082;A0A087WUZ3 Q01082 2065 2072 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.0082924 63.48 By matching By MS/MS By MS/MS 1 1 1 1.28 1.1302 13.826 3 Median NaN NaN NaN 0 0 Median 1.4046 1.2136 NaN 1 0 Median 0.83998 0.92922 NaN 1 0 Median 1.28 1.1302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5513400 2888000 2625400 0 0 0 691240 350690 340560 3894900 2079000 1816000 927230 458320 468910 0 0 0 0 0 0 29314 2681 30821 153417;153418;153419 154219;154220;154221 154221 3 SACDTVDTWLDDTAK LGWSKKYEFGESDLRSACDTVDTWLDDTAK SACDTVDTWLDDTAKGRQNISPDKIPWSAL R S A A K G 2 0 0 4 1 0 0 0 0 0 1 1 0 0 0 1 3 1 0 1 0 0 15 0 1696.725 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4214 4228 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00034781 56.205 By matching By MS/MS 1 1 1.1206 1.089 0.99811 2 Median NaN NaN NaN 0 0 Median 1.2303 1.0814 NaN 1 0 Median 1.0206 1.0968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6971400 3387800 3583600 0 0 0 1132200 456710 675540 5839200 2931100 2908100 0 0 0 0 0 0 0 0 0 29315 2865 30822 153420;153421 154222;154223 154223 2 SADAAAGAPLPR ______________________________ ______________________________ M S A P R L 5 1 0 1 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 12 0 1095.5673 O14745;J3QRP6 O14745 2 13 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes no 2 0.010947 55.064 By MS/MS 1 0.70379 0.69153 NaN 1 Median 0.70379 0.69153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4930900 2899400 2031600 4930900 2899400 2031600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29316 1493 30823 153422 154224 154224 1 SADESGQALLAAGHYASDEVR QEHKGEIDAHEDSFKSADESGQALLAAGHY QALLAAGHYASDEVREKLTVLSEERAALLE K S A V R E 5 1 0 2 0 1 2 2 1 0 2 0 0 0 0 3 0 0 1 1 0 0 21 0 2145.9927 A0A0D9SF54;Q13813 Q13813 419 439 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.7031E-28 163.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 5 3 1 1 1.0469 0.95973 18.629 17 Median 1.2626 1.198 9.0147 4 2 Linear 1.2857 1.0287 27.155 3 0 Median 0.84113 0.91688 20.456 5 0 Median 1.0469 0.95973 3.8111 3 0 Plateau 1.0024 1.03 NaN 1 0 Median 1.087 0.89354 NaN 1 0 Median 280270000 136040000 144240000 48839000 21042000 27797000 24678000 10475000 14203000 189220000 96351000 92866000 5907900 2728700 3179200 11015000 5142300 5872500 618160 295910 322250 29317 264;2838 30824 153423;153424;153425;153426;153427;153428;153429;153430;153431;153432;153433;153434;153435;153436;153437;153438;153439 154225;154226;154227;154228;154229;154230;154231;154232;154233;154234;154235;154236;154237;154238;154239;154240;154241;154242;154243 154230 19 SADESGQALLAAGHYASDEVREK QEHKGEIDAHEDSFKSADESGQALLAAGHY LLAAGHYASDEVREKLTVLSEERAALLELW K S A E K L 5 1 0 2 0 1 3 2 1 0 2 1 0 0 0 3 0 0 1 1 0 0 23 1 2403.1302 A0A0D9SF54;Q13813 Q13813 419 441 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3;4 1.9483E-23 99.93 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.0265 1.1618 30.524 6 Median 1.3379 1.3474 12.269 2 0 Median 0.66911 0.61588 NaN 1 0 Median 0.89109 1.0676 3.2616 2 0 Median NaN NaN NaN 0 0 Median 1.1557 1.3075 NaN 1 0 Median NaN NaN NaN 0 0 Median 76692000 37022000 39670000 16246000 6509200 9737300 437300 225900 211400 56642000 28698000 27943000 0 0 0 3366700 1588300 1778400 0 0 0 29318 264;2838 30825 153440;153441;153442;153443;153444;153445 154244;154245;154246;154247;154248;154249;154250 154247 7 SADEVLFTGVK NTKEMFGGFFKSVVKSADEVLFTGVKEVDD SVVKSADEVLFTGVKEVDDFFEQEKNFLIN K S A V K E 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 1 0 0 2 0 0 11 0 1164.6027 Q9Y5X3;Q5QPE5;A0A087WUY5;Q5QPE4 Q9Y5X3 193 203 SNX5 Sorting nexin-5 yes no 2 0.0017591 79.974 By MS/MS By MS/MS 1 1 0.95904 0.89651 66.052 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57712 0.56197 NaN 1 1 Median 1.5937 1.4302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14752000 7313800 7438100 0 0 0 0 0 0 7905000 4787800 3117200 6846800 2525900 4320900 0 0 0 0 0 0 29319 4471 30826 153446;153447 154251;154252 154251 2 SADFNPDFVFTEK PIVLGRRQKALGKNRSADFNPDFVFTEKEG NRSADFNPDFVFTEKEGTYDGSWALADVMS R S A E K E 1 0 1 2 0 0 1 0 0 0 0 1 0 3 1 1 1 0 0 1 0 0 13 0 1515.6882 B7Z6D5;Q96GQ7;A0A087WYH5 B7Z6D5 48 60 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0013404 55.401 By MS/MS By matching 2 1 1.1911 1.2628 8.4291 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1397 1.1903 8.3696 2 0 Median 1.6084 1.3207 NaN 1 0 Median 8463400 4189800 4273600 0 0 0 0 0 0 0 0 0 0 0 0 8368300 4160900 4207400 95141 28960 66181 29320 635 30827 153448;153449;153450 154253;154254;154255 154255 3 SADFSDTYVVPFVK TATESTKEEPQLESKSADFSDTYVVPFVKY KSADFSDTYVVPFVKYEFICRKCQMMFTDE K S A V K Y 1 0 0 2 0 0 0 0 0 0 0 1 0 2 1 2 1 0 1 3 0 0 14 0 1573.7664 E7EVZ1;Q86UP3 E7EVZ1 3361 3374 ZFHX4 Zinc finger homeobox protein 4 yes no 2 0.0051528 37.556 By MS/MS 1 0.84772 0.92932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84772 0.92932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1870000 974990 895060 0 0 0 0 0 0 1870000 974990 895060 0 0 0 0 0 0 0 0 0 29321 898 30828 153451 154256;154257 154256 2 SADFSQSTSIGIK NRMIKSELEDFELDKSADFSQSTSIGIKNN DKSADFSQSTSIGIKNNICAFLVMGVCEVL K S A I K N 1 0 0 1 0 1 0 1 0 2 0 1 0 1 0 4 1 0 0 0 0 0 13 0 1339.662 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 726 738 FANCI Fanconi anemia group I protein yes no 2 0.00076922 78.655 By MS/MS 2 0.42215 0.36433 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42215 0.36433 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4600700 3714300 886370 0 0 0 0 0 0 0 0 0 4600700 3714300 886370 0 0 0 0 0 0 29322 4132 30829 153452;153453 154258;154259 154258 2 SADFTNFDPR QKVVDVLDSIKTKGKSADFTNFDPRGLLPE KTKGKSADFTNFDPRGLLPESLDYWTYPGS K S A P R G 1 1 1 2 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 10 0 1168.5149 P00918 P00918 172 181 CA2 Carbonic anhydrase 2 yes yes 2 0.0070645 48.283 By MS/MS 1 1.3222 1.1181 NaN 1 Median NaN NaN NaN 0 0 Median 1.3222 1.1181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6580600 2604600 3976000 0 0 0 6580600 2604600 3976000 0 0 0 0 0 0 0 0 0 0 0 0 29323 1827 30830 153454 154260;154261 154260 2 SADGSAPAGEGEGVTLQR AEEKEEAREKMLAAKSADGSAPAGEGEGVT GSAPAGEGEGVTLQRNITLLNGVAIIVGTI K S A Q R N 3 1 0 1 0 1 2 4 0 0 1 0 0 0 1 2 1 0 0 1 0 0 18 0 1700.7966 Q01650 Q01650 31 48 SLC7A5 Large neutral amino acids transporter small subunit 1 yes yes 2 8.0792E-06 57.802 By MS/MS 2 2.0043 1.7931 152.41 2 Median NaN NaN NaN 0 0 Median 2.0043 1.7931 152.41 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6962600 1817500 5145100 0 0 0 6962600 1817500 5145100 0 0 0 0 0 0 0 0 0 0 0 0 29324 2688 30831 153455;153456 154262;154263 154262 2 SADGVIVSGVK NKKEKLEDFFKNMVKSADGVIVSGVKDVDD NMVKSADGVIVSGVKDVDDFFEHERTFLLE K S A V K D 1 0 0 1 0 0 0 2 0 1 0 1 0 0 0 2 0 0 0 3 0 0 11 0 1030.5659 A0A0A0MRI2;Q9UNH7;G3V5X9 A0A0A0MRI2 206 216 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 2 0.00016143 81.338 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0921 0.99763 14.195 4 Median 0.79728 0.77346 NaN 1 0 Median 1.1779 1.0026 NaN 1 0 Median 1.0713 1.0664 NaN 1 0 Median 1.1134 0.99264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11062000 5296100 5765600 1864100 1050200 813900 4912800 2320200 2592600 2522200 1226400 1295800 1762500 699270 1063300 0 0 0 0 0 0 29325 161 30832 153457;153458;153459;153460 154264;154265;154266 154266 3 SADTLWDIQK INQKLKDDEVAQLKKSADTLWDIQKDLKDL AQLKKSADTLWDIQKDLKDL__________ K S A Q K D 1 0 0 2 0 1 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 10 0 1175.5823 P07195 P07195 320 329 LDHB L-lactate dehydrogenase B chain yes yes 2 0.00033784 107.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 1 1 1 1.2358 1.0528 13.637 13 Median 1.1574 1.061 18.744 5 0 Median 1.2729 1.0528 12.923 5 0 Median 1.1971 1.1541 NaN 1 0 Median 1.2394 1.04 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1963 0.9994 NaN 1 0 Median 942360000 416180000 526180000 522180000 237030000 285150000 378030000 160450000 217580000 33689000 14942000 18747000 7874000 3464400 4409500 0 0 0 583040 294470 288570 29326 1880 30833 153461;153462;153463;153464;153465;153466;153467;153468;153469;153470;153471;153472;153473 154267;154268;154269;154270;154271;154272;154273;154274;154275;154276;154277;154278;154279;154280;154281;154282;154283;154284 154267 18 SADTLWGIQK VKVTLTSEEEARLKKSADTLWGIQKELQF_ ARLKKSADTLWGIQKELQF___________ K S A Q K E 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 10 0 1117.5768 P00338 P00338 319 328 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00037911 114.5 By MS/MS By MS/MS By MS/MS By MS/MS 7 3 1 2 1.1544 1.0174 26.039 13 Median 1.1964 1.1532 28.041 7 1 Median 1.1208 0.93522 3.466 3 0 Median 1.292 1.2444 NaN 1 0 Median 0.88618 0.75202 29.554 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 722270000 309640000 412640000 577010000 242400000 334610000 122160000 56796000 65368000 18452000 8260200 10192000 4652200 2181900 2470300 0 0 0 0 0 0 29327 1813 30834 153474;153475;153476;153477;153478;153479;153480;153481;153482;153483;153484;153485;153486 154285;154286;154287;154288;154289;154290;154291;154292;154293;154294;154295;154296;154297;154298;154299;154300;154301;154302;154303 154297 19 SAEAELQSK ERARQVQVALETAQRSAEAELQSKRASFAE LETAQRSAEAELQSKRASFAEKTAQLERSL R S A S K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 9 0 961.47164 Q15149 Q15149 1710 1718 PLEC Plectin yes yes 2 0.0091518 49.418 By MS/MS 1 1.3865 1.1956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3865 1.1956 NaN 1 0 Median 414140 177080 237060 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 414140 177080 237060 29328 2933 30835 153487 154304 154304 1 SAEASARPLR ______________________________ ______________________________ M S A L R V 3 2 0 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 10 1 1056.5676 E7EX90;Q6AWB1;C9J1B7;C9JZA4;C9JTE5;C9JJN7;C9JJD0;C9JUI8 E7EX90 2 11 DCTN1;DKFZp686E0752 yes no 2 0.0055311 42.109 By MS/MS By matching By matching 1 1 1 1.0345 1.0535 4.1539 3 Median 0.96638 1.0335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0345 1.1191 NaN 1 0 Median 1.2003 1.0535 NaN 1 0 Median 3183100 1563800 1619200 1407000 785610 621390 0 0 0 0 0 0 0 0 0 988560 440120 548430 787520 338110 449410 29329 906 30836 153488;153489;153490 154305 154305 1 SAEAYENFLR GTESLFFDKVRKALRSAEAYENFLRCLVIF RKALRSAEAYENFLRCLVIFNQEVISRAEL R S A L R C 2 1 1 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1198.5619 Q96ST3 Q96ST3 476 485 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 9.9982E-06 152.59 By MS/MS By matching By MS/MS 2 1 2 0.95257 0.89977 32.228 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74222 0.76293 25.757 2 0 Median 1.0266 0.89977 NaN 1 0 Median 0.85365 0.87045 56.91 2 1 Median NaN NaN NaN 0 0 Median 28399000 14651000 13747000 0 0 0 0 0 0 20692000 10535000 10157000 534110 269240 264870 7172100 3847100 3325100 0 0 0 29330 3737 30837 153491;153492;153493;153494;153495 154306;154307 154306 2 SAEDELAMR LLSSMNLPGGELRRRSAEDELAMRGFLQEG GELRRRSAEDELAMRGFLQEGDLISAEVQA R S A M R G 2 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 9 0 1020.4546 Q13868;A3KFL5;A3KFL2;A3KFL1 Q13868 124 132 EXOSC2 Exosome complex component RRP4 yes no 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS 1 1 2 1.0635 0.96612 13.154 4 Median NaN NaN NaN 0 0 Median 1.1678 0.97682 NaN 1 0 Median 0.96856 0.95553 NaN 1 0 Median 1.1305 0.94408 22.613 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16587000 7761600 8825000 0 0 0 3308600 1452600 1856000 6534100 3647500 2886600 6743900 2661500 4082400 0 0 0 0 0 0 29331 2843 30838;30839 153496;153497;153498;153499 154308;154309;154310;154311;154312;154313 154312 1527 6 SAEDYNSSNALNVK KKTSNSQKYMSFTDKSAEDYNSSNALNVKA KSAEDYNSSNALNVKAVSETPAVPPVSEDE K S A V K A 2 0 3 1 0 0 1 0 0 0 1 1 0 0 0 3 0 0 1 1 0 0 14 0 1510.69 Q13153;E9PM17;B3KNX7;H0YCM0 Q13153 149 162 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase yes no 2 3.8845E-05 85.355 By MS/MS By MS/MS 1 1 1.0474 0.9478 20.608 2 Median 0.85559 0.81928 NaN 1 1 Median 1.2821 1.0965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8797900 4030300 4767500 4922500 2497800 2424700 3875300 1532500 2342800 0 0 0 0 0 0 0 0 0 0 0 0 29332 2791 30840 153500;153501 154314;154315;154316 154315 3 SAEEEAADLPTKPTK SSNGGESSSRSAEKRSAEEEAADLPTKPTK SAEEEAADLPTKPTKISKFGFAIGSQTTKK R S A T K I 3 0 0 1 0 0 3 0 0 0 1 2 0 0 2 1 2 0 0 0 0 0 15 1 1585.7835 Q8WW12 Q8WW12 53 67 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2;3 1.0506E-06 91.937 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 0.8287 0.78839 8.7956 11 Median 0.81244 0.82593 4.5598 3 0 Median 0.97315 0.88979 6.4021 3 1 Median 0.75439 0.75194 5.209 2 0 Median 0.83089 0.74802 3.0995 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57837000 30181000 27657000 21504000 11064000 10440000 7246400 2896400 4350000 16801000 9616900 7183900 12286000 6603300 5682500 0 0 0 0 0 0 29333 3505 30841 153502;153503;153504;153505;153506;153507;153508;153509;153510;153511;153512;153513 154317;154318;154319;154320;154321;154322;154323;154324;154325;154326;154327;154328;154329;154330;154331;154332;154333;154334 154318 18 SAEELKEMQDK YIAYQFLLAEDTKVRSAEELKEMQDKVIKL TKVRSAEELKEMQDKVIKLQEELSENDKKI R S A D K V 1 0 0 1 0 1 3 0 0 0 1 2 1 0 0 1 0 0 0 0 0 0 11 1 1306.6075 O95347;Q5T821 O95347 249 259 SMC2 Structural maintenance of chromosomes protein 2 yes no 2;3 2.3449E-21 202.05 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1 1.0789 1.1307 39.259 10 Median 1.1237 1.183 73.665 3 3 Median 1.04 0.96674 8.601 2 0 Median 1.0395 1.1927 2.5878 2 0 Median 1.2069 1.1496 7.3056 2 0 Median NaN NaN NaN 0 0 Median 0.96148 0.87413 NaN 1 0 Median 55650000 28194000 27457000 25031000 13629000 11402000 14766000 7345800 7419900 9944200 4658700 5285500 5568000 2377700 3190200 0 0 0 341640 182490 159160 29334 1766 30842 153514;153515;153516;153517;153518;153519;153520;153521;153522;153523 154335;154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347;154348 154343 14 SAEEVEEIKAEK GRIGADEEIDDFKGRSAEEVEEIKAEKEAK KGRSAEEVEEIKAEKEAKTQAILLEMVGDL R S A E K E 2 0 0 0 0 0 5 0 0 1 0 2 0 0 0 1 0 0 0 1 0 0 12 1 1360.6722 Q8WUA2 Q8WUA2 204 215 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 yes yes 2;3 0.0065322 70.977 By MS/MS By MS/MS By MS/MS 1 2 1 2.0772 2.0565 86.569 4 Median 0.91034 0.86389 NaN 1 1 Median 4.6432 4.3368 47.541 2 2 Median 1.301 1.3648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24243000 6913800 17329000 2890400 1893000 997400 18350000 3804900 14545000 3002500 1215900 1786700 0 0 0 0 0 0 0 0 0 29335 3486 30843 153524;153525;153526;153527 154349;154350;154351;154352;154353 154351 5 SAEFLLHMLK QAKQWGWTQGRWPKKSAEFLLHMLKNAESN RWPKKSAEFLLHMLKNAESNAELKGLDVDS K S A L K N 1 0 0 0 0 0 1 0 1 0 3 1 1 1 0 1 0 0 0 0 0 0 10 0 1187.6373 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81 A0A087WXM6 87 96 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.00039662 78.192 By MS/MS By MS/MS By MS/MS 1 2 1 1.1084 0.97552 6.4835 4 Median 1.0389 0.95924 NaN 1 0 Median 1.2259 1.0412 6.8319 2 0 Median 0.99707 0.94656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66329000 32285000 34044000 55439000 27140000 28299000 7008600 3201400 3807300 3881500 1943500 1938000 0 0 0 0 0 0 0 0 0 29336 67 30844 153528;153529;153530;153531 154354;154355;154356;154357 154354 4 SAEHYTETALDEIR WDIQGKKFVAMKVVKSAEHYTETALDEIRL KSAEHYTETALDEIRLLKSVRNSDPNDPNR K S A I R L 2 1 0 1 0 0 3 0 1 1 1 0 0 0 0 1 2 0 1 0 0 0 14 0 1633.7584 H3BLV9;Q96SB4;D6RBM8 H3BLV9 129 142 SRPK1 SRSF protein kinase 1 yes no 2;3 0.00091917 55.841 By MS/MS By MS/MS 2 1 0.98648 0.9415 9.5576 3 Median 1.0086 0.96227 3.0855 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95063 0.81903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13178000 6014300 7163300 11484000 5207800 6276100 0 0 0 0 0 0 1693700 806510 887160 0 0 0 0 0 0 29337 1207 30845 153532;153533;153534 154358;154359;154360 154359 2 SAEIDSDDTGGSAAQK LRKLFVQDLATRVKKSAEIDSDDTGGSAAQ AEIDSDDTGGSAAQKQKISFLENNLEQLTK K S A Q K Q 3 0 0 3 0 1 1 2 0 1 0 1 0 0 0 3 1 0 0 0 0 0 16 0 1550.6696 P33176 P33176 814 829 KIF5B Kinesin-1 heavy chain yes yes 2 3.6023E-10 107.09 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 1.072 0.96469 28.201 8 Median 1.0301 0.9953 3.6826 3 0 Plateau 1.0167 0.87608 9.6226 2 0 Median 1.5873 1.6917 2.7202 2 0 Median 1.1426 0.97352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57211000 26218000 30993000 15221000 7337100 7883400 35827000 16337000 19490000 3829700 1467000 2362600 2334300 1076600 1257700 0 0 0 0 0 0 29338 2221 30846 153535;153536;153537;153538;153539;153540;153541;153542 154361;154362;154363;154364;154365;154366;154367 154365 7 SAELPDAVGPIVQLQEK KDMYNDTLNGSTEKRSAELPDAVGPIVQLQ ELPDAVGPIVQLQEKLYVPVKEYPDFNFVG R S A E K L 2 0 0 1 0 2 2 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 17 0 1792.9571 Q96PU8;F5GXS8;F5GYM3;H0YG47;F5H5U6;F5H8C8;F5GYT7 Q96PU8 69 85 QKI Protein quaking yes no 2;3 3.6976E-13 119.69 By MS/MS 3 0.53356 0.55061 10.148 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53356 0.55061 10.148 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36862000 22341000 14520000 0 0 0 0 0 0 36862000 22341000 14520000 0 0 0 0 0 0 0 0 0 29339 3715 30847 153543;153544;153545 154368;154369;154370;154371;154372 154369 5 SAEQISDSVR LNPDGLFTDYYGRSRSAEQISDSVRRHMAA YGRSRSAEQISDSVRRHMAAFRSVLS____ R S A V R R 1 1 0 1 0 1 1 0 0 1 0 0 0 0 0 3 0 0 0 1 0 0 10 0 1090.5255 O43819 O43819 246 255 SCO2 Protein SCO2 homolog, mitochondrial yes yes 2 0.0031972 57.59 By MS/MS 1 0.98617 0.93008 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98617 0.93008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2119800 1020200 1099700 0 0 0 0 0 0 2119800 1020200 1099700 0 0 0 0 0 0 0 0 0 29340 1595 30848 153546 154373 154373 1 SAESPTSPVTSETGSTFK CKEEGEEKQEKEPSKSAESPTSPVTSETGS SPTSPVTSETGSTFKKFFTQGWAGWRKKTS K S A F K K 1 0 0 0 0 0 2 1 0 0 0 1 0 1 2 5 4 0 0 1 0 0 18 0 1811.8425 Q02952 Q02952 280 297 AKAP12 A-kinase anchor protein 12 yes yes 2 1.9012E-14 157.52 By MS/MS By MS/MS 1 2 0.95141 0.93778 8.2304 3 Median 0.95141 0.94678 NaN 1 0 Median 1.0057 0.87546 9.7258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14638000 7287600 7350000 5462600 2805600 2656900 9175100 4482000 4693100 0 0 0 0 0 0 0 0 0 0 0 0 29341 2705 30849 153547;153548;153549 154374;154375;154376;154377 154377 4 SAESPTSPVTSETGSTFKK CKEEGEEKQEKEPSKSAESPTSPVTSETGS PTSPVTSETGSTFKKFFTQGWAGWRKKTSF K S A K K F 1 0 0 0 0 0 2 1 0 0 0 2 0 1 2 5 4 0 0 1 0 0 19 1 1939.9375 Q02952 Q02952 280 298 AKAP12 A-kinase anchor protein 12 yes yes 3 2.9901E-06 50.226 By MS/MS By MS/MS 1 1 0.8034 0.81844 17.44 2 Median 0.85125 0.92585 NaN 1 0 Median 0.75823 0.72348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14176000 7303000 6872800 5157600 2520000 2637500 9018200 4783000 4235200 0 0 0 0 0 0 0 0 0 0 0 0 29342 2705 30850 153550;153551 154378;154379;154380 154380 3 SAEVETSEGVDESEKK ______________________________ AEVETSEGVDESEKKNSGALEKENQMRMAD M S A K K N 1 0 0 1 0 0 5 1 0 0 0 2 0 0 0 3 1 0 0 2 0 0 16 1 1722.7796 P30519;I3L159;I3L1F5;I3L276;I3L4P8;A0A1B0GXH0;I3L463 P30519 2 17 HMOX2 Heme oxygenase 2 yes no 2 1.3781E-10 131.37 By MS/MS By MS/MS 1 1 1.0031 0.94021 12.679 2 Median 0.88167 0.85958 NaN 1 0 Median 1.1412 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8225500 4002700 4222800 6356600 3163700 3192900 1868900 839010 1029900 0 0 0 0 0 0 0 0 0 0 0 0 29343 2194 30851 153552;153553 154381;154382;154383;154384 154382 4 SAFAPFGK FVGDLSPEITTEDIKSAFAPFGKISDARVV ITTEDIKSAFAPFGKISDARVVKDMATGKS K S A G K I 2 0 0 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 0 0 0 8 0 823.42284 Q01085;E7ETJ9;E7ETC0;A6NKZ9 Q01085 115 122 TIAL1 Nucleolysin TIAR yes no 2 0.010382 58.981 By matching By MS/MS By MS/MS By matching By matching 1 2 2 1 1 1.0469 0.97322 25.985 7 Median NaN NaN NaN 0 0 Median 0.66855 0.56866 NaN 1 0 Median 1.0758 1.0979 17.043 2 0 Median 1.2564 1.0881 14.966 2 0 Median 0.87258 0.86163 NaN 1 0 Median 1.0469 0.89213 NaN 1 0 Median 15298000 6556500 8741400 0 0 0 95834 54345 41489 9285100 4083300 5201800 3929600 1449700 2479900 1396200 656890 739300 591160 312260 278890 29344 2682 30852 153554;153555;153556;153557;153558;153559;153560 154385;154386;154387;154388 154387 4 SAFLCGVMK LQQFKESDLSHVQNKSAFLCGVMKTYRQRE SHVQNKSAFLCGVMKTYRQREKQGSKVQES K S A M K T 1 0 0 0 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 9 0 1011.4882 O43390;O60506;F6UXX1 O43390 95 103 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0044414 60.682 By matching By MS/MS By MS/MS 1 1 1 1.0021 1.0947 11.169 3 Plateau NaN NaN NaN 0 0 Median 1.0021 0.88762 NaN 1 0 Median 0.99172 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0667 1.0947 NaN 1 0 Median NaN NaN NaN 0 0 Median 12443000 6236100 6206500 0 0 0 642320 328950 313370 4304700 2198200 2106400 0 0 0 7495600 3708900 3786700 0 0 0 29345 1568;1619 30853 153561;153562;153563 154389;154390;154391;154392 154392 4 SAFLEPEGLSK CHGLTVSDGCVELNRSAFLEPEGLSKTRKS ELNRSAFLEPEGLSKTRKSVFITRKLTVSV R S A S K T 1 0 0 0 0 0 2 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1176.6027 O60318 O60318 937 947 MCM3AP Germinal-center associated nuclear protein yes yes 2 0.062313 43.282 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29346 1612 30854 153564 154393 154393 1 SAFLLQNLLVGHPEHK LMRAMQQQVQKLKVKSAFLLQNLLVGHPEH AFLLQNLLVGHPEHKGTLCSMGMVQQLVAL K S A H K G 1 0 1 0 0 1 1 1 2 0 4 1 0 1 1 1 0 0 0 1 0 0 16 0 1801.9839 Q9NZL4 Q9NZL4 250 265 HSPBP1 Hsp70-binding protein 1 yes yes 3 0.0020232 30.133 By MS/MS By matching By matching 1 2 2 1.0097 0.86848 35.216 5 Median 0.87523 0.81485 NaN 1 0 Median 0.83069 0.70838 28.817 2 0 Median 1.2197 1.2666 23.917 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17181000 8884400 8296500 9179300 4970900 4208400 4778500 2507000 2271500 3223200 1406500 1816600 0 0 0 0 0 0 0 0 0 29347 4190 30855 153565;153566;153567;153568;153569 154394;154395 154395 2 SAFLQAFLGR SVLLCKVVGARGVGKSAFLQAFLGRGLGHQ RGVGKSAFLQAFLGRGLGHQDTREQPPGYA K S A G R G 2 1 0 0 0 1 0 1 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1108.6029 Q8IXI1 Q8IXI1 430 439 RHOT2 Mitochondrial Rho GTPase 2 yes yes 2 0.0045773 52.716 By MS/MS By matching 1 1 1.2472 1.154 16.609 2 Median 1.0322 1.0261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.507 1.2978 NaN 1 0 Median 1731400 630850 1100500 1075800 483280 592490 0 0 0 0 0 0 0 0 0 0 0 0 655590 147570 508020 29348 3333 30856 153570;153571 154396;154397 154397 2 SAFLSQR KTPPVRSTAPASLSRSAFLSQRYYEDLDEV TAPASLSRSAFLSQRYYEDLDEVSSTSSVS R S A Q R Y 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 7 0 807.4239 A0A494C1F2;P35658;A0A0A0MSW3 A0A494C1F2 958 964 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.06116 47.849 By MS/MS 1 1.057 1.174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.057 1.174 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2335700 974250 1361400 0 0 0 0 0 0 2335700 974250 1361400 0 0 0 0 0 0 0 0 0 29349 467 30857 153572 154398 154398 1 SAFPHLQDAQVK NNQIFLQEYVANLLKSAFPHLQDAQVKLFV LLKSAFPHLQDAQVKLFVTGLFSLNQDIPA K S A V K L 2 0 0 1 0 2 0 0 1 0 1 1 0 1 1 1 0 0 0 1 0 0 12 0 1339.6884 O14980 O14980 984 995 XPO1 Exportin-1 yes yes 3 0.00067414 48.568 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1.081 0.91395 21.967 5 Median 0.91171 0.88149 NaN 1 0 Median 0.94823 0.80228 NaN 1 0 Median 1.3119 1.4141 NaN 1 0 Median 1.081 0.92536 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0974 0.91395 NaN 1 0 Median 30256000 15097000 15159000 13042000 6626300 6416000 11463000 5696700 5766700 2041600 1022900 1018700 2850000 1414300 1435800 0 0 0 858460 336740 521720 29350 1510 30858 153573;153574;153575;153576;153577;153578 154399;154400;154401;154402;154403;154404 154399 6 SAFSEEVNIK DTKIADSKRAFELQKSAFSEEVNIKTAEAQ FELQKSAFSEEVNIKTAEAQLAYELQGARE K S A I K T 1 0 1 0 0 0 2 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 10 0 1122.5557 J3QLD9;E7EMK3;Q14254;K7EKW9 J3QLD9 224 233 FLOT2 Flotillin-2 yes no 2 0.0039357 54.982 By matching By MS/MS 1 1 1.0192 0.99136 22.726 2 Median 0.86647 0.8442 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1989 1.1642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14053000 6318900 7734600 4750900 2262200 2488700 0 0 0 9302600 4056700 5245900 0 0 0 0 0 0 0 0 0 29351 856 30859 153579;153580 154405 154405 1 SAFSGGYYR HMEPQVKQVFQSLPKSAFSGGYYRGGFEPK FQSLPKSAFSGGYYRGGFEPKMTKREAALI K S A Y R G 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 2 0 0 2 0 0 0 9 0 1006.4508 Q96DA6;A0A2R8Y817;F2Z3A7 Q96DA6 43 51 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes no 2 9.3866E-05 147.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.2345 1.2524 13.675 5 Median 1.1194 1.0858 NaN 1 0 Median 1.5327 1.3045 NaN 1 0 Median 1.2345 1.2524 NaN 1 0 Median 1.5984 1.2583 NaN 1 0 Median 0.88656 0.94015 NaN 1 0 Median NaN NaN NaN 0 0 Median 48719000 21721000 26997000 22231000 10548000 11683000 15559000 6263700 9295700 6077800 2777600 3300200 2480000 1027100 1452900 2370800 1105500 1265400 0 0 0 29352 3625 30860 153581;153582;153583;153584;153585 154406;154407;154408;154409;154410;154411;154412 154410 7 SAFSNLFGGEPLSYTR ______________________________ AFSNLFGGEPLSYTRFSLARQVDGDNSHVE R S A T R F 1 1 1 0 0 0 1 2 0 0 2 0 0 2 1 3 1 0 1 0 0 0 16 0 1744.842 P02786;F8WBE5 P02786 7 22 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 1.0226E-09 101.39 By MS/MS By MS/MS By matching 3 4 1 1.1338 1.1099 35.003 8 Median 1.2425 1.1895 7.6719 3 0 Plateau 1.2351 1.0568 49.683 4 0 Median NaN NaN NaN 0 0 Median 0.99838 0.82388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32887000 14984000 17904000 17522000 7540200 9981700 15234000 7379800 7854000 0 0 0 131710 63924 67789 0 0 0 0 0 0 29353 1836 30861 153586;153587;153588;153589;153590;153591;153592;153593 154413;154414;154415;154416;154417;154418;154419;154420;154421 154420 9 SAGAMLKPHAPK EVRALSINTLVKISKSAGAMLKPHAPKLIP ISKSAGAMLKPHAPKLIPALLESLSVLEPQ K S A P K L 3 0 0 0 0 0 0 1 1 0 1 2 1 0 2 1 0 0 0 0 0 0 12 1 1206.6543 Q5VYK3;J3KN16 Q5VYK3 1284 1295 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 0.00047869 52.247 By matching By MS/MS 1 1 0.86675 0.86809 2.5196 2 Median 0.82477 0.85276 NaN 1 0 Median 0.91087 0.8837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3048300 1636000 1412300 1044200 553540 490680 2004100 1082500 921570 0 0 0 0 0 0 0 0 0 0 0 0 29354 3116 30862 153594;153595 154422;154423 154422 2 SAGGDFGNPLRK ______________________________ ______________________________ M S A R K F 1 1 1 1 0 0 0 3 0 0 1 1 0 1 1 1 0 0 0 0 0 0 12 1 1217.6153 Q9NRW1;C9J0I2;Q9H0N0 Q9NRW1 2 13 RAB6B;RAB6C Ras-related protein Rab-6B;Ras-related protein Rab-6C no no 2 8.2324E-11 133.13 By MS/MS 2 0.77744 0.81305 8.8358 2 Median 0.77744 0.81305 8.8358 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17808000 10116000 7691700 17808000 10116000 7691700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29355 4089 30863 153596;153597 154424;154425 154424 2 SAGGLMFNTGIGQHILK IGRRRGRQEQRRELKSAGGLMFNTGIGQHI GGLMFNTGIGQHILKNPLIINSIIDKAALR K S A L K N 1 0 1 0 0 1 0 4 1 2 2 1 1 1 0 1 1 0 0 0 0 0 17 0 1742.9138 Q9UNQ2;A0A0C4DGB1;A0A494C0G7;D6RCL3 Q9UNQ2 24 40 DIMT1 Probable dimethyladenosine transferase yes no 3 0.065163 16.88 By MS/MS 1 1.3174 1.2618 NaN 1 Median 1.3174 1.2618 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4824300 1868300 2955900 4824300 1868300 2955900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29356 4348 30864 153598 154426 154426 1 SAGHHLIPVKENLVDK IIPTDYWKKMAKVLRSAGHHLIPVKENLVD AGHHLIPVKENLVDKIWTDRPERPCKPLLT R S A D K I 1 0 1 1 0 0 1 1 2 1 2 2 0 0 1 1 0 0 0 2 0 0 16 1 1755.9632 Q9NQW7;Q5T6H7;Q5T6H2;Q5T6H3 Q9NQW7 138 153 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 4 0.0092257 34.612 By MS/MS 2 0.86336 0.85278 8.7136 2 Median 0.86336 0.85278 8.7136 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7811600 3844400 3967200 7811600 3844400 3967200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29357 4070 30865 153599;153600 154427;154428 154428 2 SAGLAFSLYQAMAK TAEKLSPKAATLAERSAGLAFSLYQAMAKD RSAGLAFSLYQAMAKDQAVENILVSPVVVA R S A A K D 4 0 0 0 0 1 0 1 0 0 2 1 1 1 0 2 0 0 1 0 0 0 14 0 1456.7384 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PJH8;E9PIG2;E9PRS3;E9PLA6 P50454 47 60 SERPINH1 Serpin H1 yes no 2 1.2278E-05 88.681 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 1.2716 1.0792 15.504 11 Median 1.0954 1.0208 6.5352 2 0 Median 1.1691 0.99904 11.36 2 0 Median 1.0375 0.99961 3.4404 2 0 Median 1.3799 1.2051 14.378 2 0 Median 1.5231 1.451 NaN 1 0 Median 1.488 1.2338 18.93 2 0 Median 102920000 45340000 57578000 28928000 13446000 15482000 8908600 3710400 5198200 38257000 17376000 20881000 15356000 6117000 9239000 6622100 2695900 3926200 4846300 1994900 2851400 29358 2414 30866;30867 153601;153602;153603;153604;153605;153606;153607;153608;153609;153610;153611 154429;154430;154431;154432;154433;154434;154435;154436;154437;154438 154436 1124 10 SAGLPSHSSVISQHSK DRRDNPKPNVSEALRSAGLPSHSSVISQHS AGLPSHSSVISQHSKGSKSPDLLMYQGPPD R S A S K G 1 0 0 0 0 1 0 1 2 1 1 1 0 0 1 6 0 0 0 1 0 0 16 0 1620.822 P82909 P82909 42 57 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 2;3;4 1.1386E-11 167.71 By MS/MS By MS/MS By matching By matching 3 3 2 1 1.0542 1.0006 12.579 9 Median 0.90427 0.83355 15.114 3 0 Median 1.2076 0.99274 6.4671 3 0 Median 1.0221 1.093 12.489 2 0 Median NaN NaN NaN 0 0 Median 1.0138 1.0816 NaN 1 0 Median NaN NaN NaN 0 0 Median 47131000 21393000 25738000 14157000 7217900 6938900 31004000 13231000 17773000 1665400 758700 906730 0 0 0 303800 184760 119030 0 0 0 29359 2654 30868 153612;153613;153614;153615;153616;153617;153618;153619;153620 154439;154440;154441;154442;154443;154444;154445;154446;154447 154443 9 SAGNAVWLNR TVPLITSTTGAKLGKSAGNAVWLNRDKTSP AKLGKSAGNAVWLNRDKTSPFELYQFFVRQ K S A N R D 2 1 2 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1086.557 Q9Y2Z4;H0YHS6 Q9Y2Z4 285 294 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2 1.2108E-07 167.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.6839 1.5516 3.9833 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6169 1.5959 NaN 1 1 Median 1.7537 1.5085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33484000 11576000 21908000 0 0 0 0 0 0 10977000 4104400 6872500 22508000 7471800 15036000 0 0 0 0 0 0 29360 4399 30869 153621;153622;153623;153624 154448;154449;154450;154451;154452 154452 5 SAGQGEVLVYVEDPAGHQEEAK GNMVKKRAEFTVETRSAGQGEVLVYVEDPA LVYVEDPAGHQEEAKVTANNDKNRTFSVWY R S A A K V 3 0 0 1 0 2 4 3 1 0 1 1 0 0 1 1 0 0 1 3 0 0 22 0 2312.0921 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 310 331 FLNA Filamin-A no no 2;3 5.7454E-15 94.463 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 2 2 0.84327 0.78246 32.852 11 Median 0.92959 0.89727 20.215 5 0 Median 0.83649 0.74582 2.5883 2 0 Median 0.48303 0.53196 78.501 2 0 Median 0.82294 0.75713 4.653 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 409350000 206590000 202760000 254310000 125300000 129010000 108100000 56012000 52092000 44691000 24115000 20575000 2241500 1160700 1080800 0 0 0 0 0 0 29361 2088;3120 30870 153625;153626;153627;153628;153629;153630;153631;153632;153633;153634;153635 154453;154454;154455;154456;154457;154458;154459;154460;154461;154462;154463;154464;154465;154466;154467;154468;154469;154470;154471;154472 154455 20 SAGSLFPHHGTFEVIK LRKVGDKILGDLSYRSAGSLFPHHGTFEVI AGSLFPHHGTFEVIKNTDLDLDKKIPEDYC R S A I K N 1 0 0 0 0 0 1 2 2 1 1 1 0 2 1 2 1 0 0 1 0 0 16 0 1725.8839 A0A1W2PRB8;A0A1W2PNF3;A0A1W2PPP8 A0A1W2PRB8 398 413 no no 3 0.059896 9.5303 By MS/MS 1 1.4 1.4675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4 1.4675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5603200 3155500 2447700 0 0 0 0 0 0 5603200 3155500 2447700 0 0 0 0 0 0 0 0 0 29362 346 30871 153636 154473 154473 1 SAGVEQLMYIK QKALEILRKDFSELRSAGVEQLMYIKEDLI SELRSAGVEQLMYIKEDLIIPHHHSFYDFI R S A I K E 1 0 0 0 0 1 1 1 0 1 1 1 1 0 0 1 0 0 1 1 0 0 11 0 1237.6377 Q14320;B0S8I6 Q14320 243 253 FAM50A Protein FAM50A yes no 2 0.016381 36.381 By MS/MS 1 1.3015 1.3449 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3015 1.3449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12484000 5230100 7253600 0 0 0 0 0 0 12484000 5230100 7253600 0 0 0 0 0 0 0 0 0 29363 2873 30872 153637 154474 154474 1 SAGWNIPMGK NELRGKKSCHTGLGRSAGWNIPMGKLYKEL TGLGRSAGWNIPMGKLYKELPDPQESIQRA R S A G K L 1 0 1 0 0 0 0 2 0 1 0 1 1 0 1 1 0 1 0 0 0 0 10 0 1059.5172 CON__Q0IIK2 CON__Q0IIK2 143 152 yes yes 2 0.020251 52.716 By MS/MS 2 0.18575 0.17348 158.14 2 Median 0.18575 0.17348 158.14 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15132000 14040000 1092000 15132000 14040000 1092000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 29364 769 30873 153638;153639 154475;154476 154475 2 SAGYLDDVTLASAR NNLTSIKIRGTYSERSAGYLDDVTLASARP RSAGYLDDVTLASARPGPGVPATWVESCTC R S A A R P 3 1 0 2 0 0 0 1 0 0 2 0 0 0 0 2 1 0 1 1 0 0 14 0 1437.71 P11047 P11047 664 677 LAMC1 Laminin subunit gamma-1 yes yes 2 0.0004719 69.451 By MS/MS By matching 1 1 1.4602 1.292 10.732 2 Median 1.2683 1.1976 NaN 1 0 Median 1.681 1.3939 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7952200 3635900 4316300 6597900 3152300 3445600 1354300 483580 870690 0 0 0 0 0 0 0 0 0 0 0 0 29365 1949 30874 153640;153641 154477;154478 154477 2 SAHAGTYEVR QDVGRYQVSWSLDHKSAHAGTYEVRFFDEE SLDHKSAHAGTYEVRFFDEESYSLLRKAQR K S A V R F 2 1 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 10 0 1089.5203 P51571;A6NLM8 P51571 96 105 SSR4 Translocon-associated protein subunit delta yes no 2 0.013194 40.352 By MS/MS By matching 1 1 1.2771 1.1761 2.8074 2 Median NaN NaN NaN 0 0 Median 1.379 1.153 NaN 1 0 Median 1.1828 1.1997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 979700 425780 553910 0 0 0 619630 250280 369350 360070 175500 184570 0 0 0 0 0 0 0 0 0 29366 2435 30875 153642;153643 154479;154480 154480 2 SAHATAPVNIAGSR RTPQAPASANLVGPRSAHATAPVNIAGSRT RSAHATAPVNIAGSRTAAALAPASLTSARM R S A S R T 4 1 1 0 0 0 0 1 1 1 0 0 0 0 1 2 1 0 0 1 0 0 14 0 1350.7004 Q9UQ35 Q9UQ35 2343 2356 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 3.9252E-06 86.944 By MS/MS By matching By matching By MS/MS By MS/MS 3 3 1 4 3 1.0205 0.90947 37.265 14 Median 0.82813 0.82941 16.029 3 0 Median 0.72291 0.61445 24.874 3 0 Median 0.26152 0.28741 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0362 1.0871 10.668 4 1 Median 1.0611 0.88314 9.1131 3 0 Median 27497000 13273000 14224000 4955000 2653700 2301300 4900900 2536900 2363900 561150 473160 87982 0 0 0 12880000 5563300 7316500 4200500 2045800 2154700 29367 4359 30876 153644;153645;153646;153647;153648;153649;153650;153651;153652;153653;153654;153655;153656;153657 154481;154482;154483;154484;154485;154486;154487;154488;154489;154490;154491 154486 10 SAHLQWMVVR ______________________________ ______________________________ M S A V R N 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 2 0 0 10 0 1225.639 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 2 11 RPL28 60S ribosomal protein L28 yes no 2 0.00015096 107.57 By MS/MS By MS/MS By matching By MS/MS By MS/MS 6 3 2 3 4 1.3687 1.1898 14.014 17 Median 1.0976 1.0257 17.296 5 0 Median 1.4217 1.1979 10.256 3 0 Median NaN NaN NaN 0 0 Median 1.3364 1.1071 10.184 2 0 Median 1.1996 1.2695 7.5991 3 0 Median 1.5819 1.2606 7.9599 4 0 Median 218350000 91841000 126510000 115010000 47509000 67502000 10993000 4875900 6116600 0 0 0 6491100 2649100 3842100 46212000 20883000 25329000 39645000 15925000 23721000 29368 1191 30877;30878 153658;153659;153660;153661;153662;153663;153664;153665;153666;153667;153668;153669;153670;153671;153672;153673;153674;153675 154492;154493;154494;154495;154496;154497;154498;154499;154500;154501;154502;154503;154504;154505;154506;154507;154508 154497 399 17 SAHLTNPWNEHKPVK FKIDWICRRELPFTKSAHLTNPWNEHKPVK SAHLTNPWNEHKPVKIGRDGQEIELECGTQ K S A V K I 1 0 2 0 0 0 1 0 2 0 1 2 0 0 2 1 1 1 0 1 0 0 15 1 1756.9009 Q96MU7;J3QR07 Q96MU7 458 472 YTHDC1 YTH domain-containing protein 1 yes no 4 0.0071561 37.013 By MS/MS 1 0.81471 0.91211 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81471 0.91211 NaN 1 1 Median NaN NaN NaN 0 0 Median 11840000 6403900 5436000 0 0 0 0 0 0 0 0 0 0 0 0 11840000 6403900 5436000 0 0 0 29369 1347 30879 153676 154509 154509 1 SAHTLVGPTPSR SSGSEEDGEGPQGAKSAHTLVGPTPSRTET GAKSAHTLVGPTPSRTETLVEETAAESSED K S A S R T 1 1 0 0 0 0 0 1 1 0 1 0 0 0 2 2 2 0 0 1 0 0 12 0 1221.6466 E7ETY2;A0A3B3IS06 E7ETY2 1167 1178 TCOF1 yes no 3 0.047724 15.545 By MS/MS By MS/MS 2 1 0.83186 0.88756 6.2488 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82529 0.89839 1.714 2 0 Median 0.91887 0.80789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4047000 2194200 1852700 0 0 0 0 0 0 3399500 1866300 1533200 647480 327940 319540 0 0 0 0 0 0 29370 891 30880 153677;153678;153679 154510;154511;154512;154513 154513 4 SAIGEGMTR YPPINVLPSLSRLMKSAIGEGMTRKDHADV LSRLMKSAIGEGMTRKDHADVSNQLYACYA K S A T R K 1 1 0 0 0 0 1 2 0 1 0 0 1 0 0 1 1 0 0 0 0 0 9 0 920.43857 P21281;C9JL73;P15313;C9JZ02 P21281 404 412 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 2 0.0040235 61.962 By MS/MS 1 1.9295 1.6389 NaN 1 Median NaN NaN NaN 0 0 Median 1.9295 1.6389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4409100 1528700 2880400 0 0 0 4409100 1528700 2880400 0 0 0 0 0 0 0 0 0 0 0 0 29371 2086 30881 153680 154514 154514 1 SAIIQNVEK FDYKAQREDELTFIKSAIIQNVEKQEGGWW ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ K S A E K Q 1 0 1 0 0 1 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 9 0 1000.5553 P19174 P19174 815 823 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.0024046 72.23 By matching By MS/MS 1 1 1.3325 1.2349 20.239 2 Median 1.4088 1.4249 NaN 1 0 Median 1.2603 1.0703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7208400 2901200 4307100 1041700 410830 630910 6166600 2490400 3676200 0 0 0 0 0 0 0 0 0 0 0 0 29372 2062 30882 153681;153682 154515 154515 1 SAILGLPQPLLELNDSPVFK AEPFTKALDMLDAEKSAILGLPQPLLELND LPQPLLELNDSPVFKTVLERMQRFFSTLYE K S A F K T 1 0 1 1 0 1 1 1 0 1 5 1 0 1 3 2 0 0 0 1 0 0 20 0 2150.1987 Q9HAV4 Q9HAV4 811 830 XPO5 Exportin-5 yes yes 3 0.058242 7.9922 By MS/MS By matching By matching 2 1 1 0.76987 0.73047 43.365 4 Median 0.73424 0.72946 9.8855 2 0 Median 0.74649 0.68209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6089 1.6813 NaN 1 0 Median NaN NaN NaN 0 0 Median 2288400 1366100 922360 1875200 1159700 715600 236400 133010 103380 0 0 0 0 0 0 176790 73414 103370 0 0 0 29373 4012 30883 153683;153684;153685;153686 154516 154516 1 SAILSNTPSLLALR EERLVISHEGDPAWRSAILSNTPSLLALRH RSAILSNTPSLLALRHVLDDASDEYKIIML R S A L R H 2 1 1 0 0 0 0 0 0 1 4 0 0 0 1 3 1 0 0 0 0 0 14 0 1454.8457 Q9H6A9 Q9H6A9 1689 1702 PCNXL3 Pecanex-like protein 3 yes yes 2 0.0027456 41.283 By matching By MS/MS 1 1 0.57987 0.61608 43.511 2 Median 0.45223 0.45292 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74354 0.83803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2304100 1281100 1023000 1153300 637610 515740 0 0 0 1150800 643460 507300 0 0 0 0 0 0 0 0 0 29374 3972 30884 153687;153688 154517 154517 1 SAINEVVTR ______________________________ EKKKGRSAINEVVTREYTINIHKRIHGVGF R S A T R E 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 987.53491 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;B8ZZK4 P62899 15 23 RPL31 60S ribosomal protein L31 yes no 2 9.6915E-05 147.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 4 4 4 1.2734 1.0423 15.244 23 Median 0.94582 0.94923 6.3655 3 0 Median 1.1791 1.0076 6.2521 5 0 Median 1.3335 1.3331 10.552 3 0 Median 1.3492 1.0375 7.5919 4 0 Median 1.352 1.3984 14.716 4 0 Median 1.3106 1.0325 2.3612 4 0 Median 666300000 301500000 364800000 200250000 93538000 106710000 295090000 131750000 163340000 58960000 27503000 31457000 47633000 20397000 27236000 27504000 12709000 14795000 36863000 15604000 21259000 29375 2607 30885 153689;153690;153691;153692;153693;153694;153695;153696;153697;153698;153699;153700;153701;153702;153703;153704;153705;153706;153707;153708;153709;153710;153711 154518;154519;154520;154521;154522;154523;154524;154525;154526;154527;154528;154529;154530;154531;154532;154533;154534;154535;154536;154537;154538;154539;154540;154541;154542;154543;154544;154545;154546;154547;154548;154549;154550;154551;154552;154553;154554 154535 37 SAIPAEESDQLLIR ______________________________ MSAIPAEESDQLLIRPLGAGQEVGRSCIIL M S A I R P 2 1 0 1 0 1 2 0 0 2 2 0 0 0 1 2 0 0 0 0 0 0 14 0 1540.8097 Q9UKF6 Q9UKF6 2 15 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 2 0.028097 40.589 By MS/MS 1 0.86288 0.90628 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86288 0.90628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1310300 748650 561680 0 0 0 0 0 0 1310300 748650 561680 0 0 0 0 0 0 0 0 0 29376 4309 30886 153712 154555 154555 1 SAIPAEESDQLLIRPLGAGQEVGR ______________________________ QLLIRPLGAGQEVGRSCIILEFKGRKIMLD M S A G R S 3 2 0 1 0 2 3 3 0 2 3 0 0 0 2 2 0 0 0 1 0 0 24 1 2505.3187 Q9UKF6 Q9UKF6 2 25 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 3 2.16E-07 41.115 By matching By MS/MS By matching 1 1 1 0.81787 0.72471 21.403 3 Median 0.98351 1.0084 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60515 0.6753 NaN 1 0 Median 0.81787 0.72471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23937000 16226000 7711300 838530 448310 390220 0 0 0 22805000 15624000 7181400 293370 153700 139670 0 0 0 0 0 0 29377 4309 30887 153713;153714;153715 154556 154556 1 SAIQNLHSFDPFADASK ______________________________ IQNLHSFDPFADASKGDDLLPAGTEDYIHI M S A S K G 3 0 1 2 0 1 0 0 1 1 1 1 0 2 1 3 0 0 0 0 0 0 17 0 1846.885 K7EM18;P41567 K7EM18 2 18 EIF1 Eukaryotic translation initiation factor 1 yes no 2 5.1083E-15 167.32 By matching By MS/MS By MS/MS By matching 2 1 1 1 0.95342 0.88311 20.828 5 Median 1.063 0.99224 16.477 2 0 Median 0.86392 0.72185 NaN 1 0 Median 0.95342 0.9051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79947 0.65439 NaN 1 0 Median 39800000 19393000 20407000 3569100 1696200 1872900 2076200 1033700 1042600 33289000 16221000 17069000 0 0 0 0 0 0 865330 442460 422870 29378 1380 30888 153716;153717;153718;153719;153720 154557;154558;154559;154560 154558 4 SAISDHLK LFCTSCNVVLNHVRKSAISDHLKSKTHTKR VLNHVRKSAISDHLKSKTHTKRKAEFEEQN K S A L K S 1 0 0 1 0 0 0 0 1 1 1 1 0 0 0 2 0 0 0 0 0 0 8 0 869.46068 Q9UFW8;C9JUJ0 Q9UFW8 56 63 CGGBP1 CGG triplet repeat-binding protein 1 yes no 2 0.025155 42.869 By MS/MS By matching 1 1 0.80802 0.71382 34.343 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96185 0.91002 NaN 1 0 Median 0.6788 0.55991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5350100 2838200 2511900 0 0 0 0 0 0 4665700 2469100 2196600 684410 369050 315360 0 0 0 0 0 0 29379 4260 30889 153721;153722 154561 154561 1 SAITPGGLR LVSITANKNTCPGDRSAITPGGLRLGAPAL TCPGDRSAITPGGLRLGAPALTSRQFREDD R S A L R L 1 1 0 0 0 0 0 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 9 0 870.49232 P34897;H0YIZ0 P34897 417 425 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.00056885 113.5 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.2178 1.0235 18.784 7 Median 0.88825 0.85576 NaN 1 0 Median 1.2775 1.0776 7.2933 2 0 Median 0.79363 0.81277 6.0617 2 0 Median 1.3154 1.1259 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5072 1.2967 NaN 1 0 Median 50926000 23841000 27085000 8594800 4416500 4178300 18259000 8084400 10175000 8731600 4792900 3938700 10930000 4750500 6179800 0 0 0 4409400 1796500 2612900 29380 2228 30890 153723;153724;153725;153726;153727;153728;153729 154562;154563;154564;154565;154566;154567;154568;154569;154570 154565 9 SAIVHLINYQDDAELATR ATNLQRLAEPSQLLKSAIVHLINYQDDAEL VHLINYQDDAELATRALPELTKLLNDEDPV K S A T R A 3 1 1 2 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 1 0 0 18 0 2028.0276 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 125 142 JUP Junction plakoglobin yes no 3 1.412E-06 66.779 By matching By MS/MS 2 3 0.71361 0.73557 89.151 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8322 2.0288 6.5956 2 0 Median NaN NaN NaN 0 0 Median 0.37857 0.40045 45.717 3 1 Median NaN NaN NaN 0 0 Median 19705000 10593000 9112600 0 0 0 0 0 0 7989700 2969100 5020700 0 0 0 11715000 7623400 4092000 0 0 0 29381 2013 30891 153730;153731;153732;153733;153734 154571;154572;154573 154571 3 SAKPTKPAASDLPVPAEGVR DSRLEQYTSAIEGTKSAKPTKPAASDLPVP KPAASDLPVPAEGVRNIKSMWEKGNVFSSP K S A V R N 4 1 0 1 0 0 1 1 0 0 1 2 0 0 4 2 1 0 0 2 0 0 20 2 1990.0847 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 430 449 CALD1 Caldesmon yes no 3;4 9.4072E-09 70.567 By matching By MS/MS By MS/MS 1 1 3 0.50806 0.54897 58.323 5 Median 0.89541 0.98623 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48137 0.54897 NaN 1 0 Median 0.50806 0.50822 62.318 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31420000 21580000 9839200 2491200 1517700 973550 0 0 0 14112000 9564600 4547500 14816000 10498000 4318200 0 0 0 0 0 0 29382 928 30892 153735;153736;153737;153738;153739 154574;154575;154576;154577 154576 4 SALAAAQTQVAEYK LSEHEQLVVTLEDHKSALAAAQTQVAEYKQ KSALAAAQTQVAEYKQLKDTLNRIPSLRKP K S A Y K Q 5 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 14 0 1449.7464 O00461 O00461 222 235 GOLIM4 Golgi integral membrane protein 4 yes yes 2 5.4999E-11 172.8 By MS/MS By matching 2 1 0.86305 0.77459 30.185 3 Median 0.80131 0.77924 42.686 2 0 Median 0.86305 0.77459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17015000 8006900 9008300 16028000 7429200 8598600 987350 577650 409700 0 0 0 0 0 0 0 0 0 0 0 0 29383 1466 30893 153740;153741;153742 154578;154579 154578 2 SALAFLNR MCDTSGSIQLSEEQKSALAFLNRGQPSSSN QLSEEQKSALAFLNRGQPSSSNAGNKRLST K S A N R G 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 890.4974 Q9H0H5;F8VRD2;F8VWY4;F8VWX0;F8VVE5;F8W0L1;F8VZ66;F8VV47;F8VYH6;F8VQZ5;F8VV37;F8W1E5;F8VQF5;F8W1T4 Q9H0H5 123 130 RACGAP1 Rac GTPase-activating protein 1 yes no 2 0.0023 111.28 By matching By MS/MS By matching By matching 1 1 2 1 1.3608 1.1833 38.323 5 Median NaN NaN NaN 0 0 Median 2.2662 1.9111 NaN 1 0 Median 1.1046 1.1357 NaN 1 0 Median 1.0149 0.89556 39.408 2 0 Median 1.3783 1.471 NaN 1 0 Median NaN NaN NaN 0 0 Median 8877300 4297400 4579900 0 0 0 150410 53656 96755 6908800 3400100 3508600 371260 191200 180060 1446900 652400 794490 0 0 0 29384 3926 30894 153743;153744;153745;153746;153747 154580;154581 154581 2 SALALAIK SMLKQDYKEGEMTLKSALALAIKVLNKTMD EGEMTLKSALALAIKVLNKTMDVSKLSAEK K S A I K V 3 0 0 0 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 785.50109 P25789;H0YMZ1;H0YN18;H0YL69;H0YMI6;H0YMA1;H0YKT8;H0YKS0 P25789 188 195 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type;Proteasome subunit beta type yes no 1 0.049326 66.799 By MS/MS By matching By matching 1 2 1 1.1959 1.0228 5.0104 4 Median 1.2075 1.0942 NaN 1 0 Median 1.2127 1.0228 3.239 2 0 Median NaN NaN NaN 0 0 Median 1.1806 0.97754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57052000 25444000 31609000 49072000 21904000 27169000 5698600 2498200 3200300 0 0 0 2281600 1041800 1239800 0 0 0 0 0 0 29385 2138 30895 153748;153749;153750;153751 154582 154582 0 SALALVTGAGSGIGR ______________________________ SALALVTGAGSGIGRAVSVRLAGEGATVAA R S A G R A 3 1 0 0 0 0 0 4 0 1 2 0 0 0 0 2 1 0 0 1 0 0 15 0 1328.7412 Q92506 Q92506 11 25 HSD17B8 Estradiol 17-beta-dehydrogenase 8 yes yes 2 0.00010572 80.245 By MS/MS By MS/MS 2 1 0.73814 0.69364 14.816 3 Median 0.68837 0.65463 20.414 2 1 Median NaN NaN NaN 0 0 Median 0.73814 0.69364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12136000 6786600 5349600 10339000 5844600 4494900 0 0 0 1796700 942010 854710 0 0 0 0 0 0 0 0 0 29386 3528 30896 153752;153753;153754 154583;154584 154584 2 SALAPNLLTSGK RFCAFGGNPPVTGPRSALAPNLLTSGKKKK GPRSALAPNLLTSGKKKKEMQVTEAPVTQE R S A G K K 2 0 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 0 0 0 12 0 1170.6608 O15446 O15446 163 174 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 2 0.0040468 66.595 By MS/MS 1 3.3054 3.2731 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.3054 3.2731 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36320000 8662800 27657000 0 0 0 0 0 0 36320000 8662800 27657000 0 0 0 0 0 0 0 0 0 29387 1548 30897 153755 154585 154585 1 SALASVIMGLSPILGK PCIKELVSDANQHVKSALASVIMGLSPILG ALASVIMGLSPILGKDNTIEHLLPLFLAQL K S A G K D 2 0 0 0 0 0 0 2 0 2 3 1 1 0 1 3 0 0 0 1 0 0 16 0 1555.9008 P30153;B3KQV6 P30153 343 358 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 5.0347E-08 134.99 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 3 1 2 0.99922 0.90022 11.682 14 Median 0.93721 0.90459 3.5617 4 0 Median 0.95829 0.80728 12.117 4 0 Median 1.0177 0.98135 4.5416 3 0 Median 1.0466 0.89938 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1196 0.94278 11.08 2 0 Median 82937000 40317000 42620000 22499000 11114000 11385000 53306000 25762000 27544000 6260900 3017200 3243700 596910 284940 311970 0 0 0 274730 139850 134880 29388 2190 30898;30899 153756;153757;153758;153759;153760;153761;153762;153763;153764;153765;153766;153767;153768;153769 154586;154587;154588;154589;154590;154591;154592;154593;154594;154595 154594 932 10 SALDQYR QYDIDDAIAKNLIDRSALDQYRAGTLSITE IAKNLIDRSALDQYRAGTLSITEFADMLSG R S A Y R A 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 7 0 851.41373 Q15149;H0YDN1 Q15149 4354 4360 PLEC Plectin yes no 2 0.050156 40.103 By matching By matching By MS/MS 2 1 1 1.2573 1.1524 14.423 4 Median NaN NaN NaN 0 0 Median 1.2573 1.0778 8.8101 2 0 Median 1.0348 1.1577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.67 1.4335 NaN 1 0 Median 7143800 3133300 4010500 0 0 0 4969700 2237500 2732200 707800 401490 306310 0 0 0 0 0 0 1466300 494290 972020 29389 2933 30900 153770;153771;153772;153773 154596 154596 1 SALEEFSK LASVVDPRVASAAAKSALEEFSKMKEEVPT VASAAAKSALEEFSKMKEEVPTALVEAHVR K S A S K M 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 909.44436 Q8TAQ2;F8VXC8 Q8TAQ2 695 702 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.0028905 103.74 By MS/MS By MS/MS By matching 1 3 2 0.96156 1.0243 29.374 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96156 1.0243 NaN 1 0 Median 1.2951 1.1389 13.544 2 1 Median NaN NaN NaN 0 0 Median 0.69235 0.66858 15.018 2 0 Median 35699000 17763000 17936000 0 0 0 0 0 0 25367000 13148000 12219000 6992700 2905500 4087200 0 0 0 3338600 1709100 1629500 29390 3455 30901 153774;153775;153776;153777;153778;153779 154597;154598;154599;154600;154601;154602 154597 6 SALEQMR GGEAPAALEAALEEKSALEQMRKFLSDPQV LEAALEEKSALEQMRKFLSDPQVHTVLVER K S A M R K 1 1 0 0 0 1 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 7 0 833.40654 Q14204 Q14204 60 66 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.048894 53.554 By MS/MS 1 1.0401 0.88434 NaN 1 Median NaN NaN NaN 0 0 Median 1.0401 0.88434 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3168100 1439500 1728600 0 0 0 3168100 1439500 1728600 0 0 0 0 0 0 0 0 0 0 0 0 29391 2865 30902 153780 154603 154603 1 SALFAQLNQGEAITK LFENEGKKEESSPSRSALFAQLNQGEAITK SALFAQLNQGEAITKGLRHVTDDQKTYKNP R S A T K G 3 0 1 0 0 2 1 1 0 1 2 1 0 1 0 1 1 0 0 0 0 0 15 0 1589.8413 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123 B7Z385 149 163 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 yes no 2 0.00037797 50.207 By MS/MS 1 0.76098 0.72128 NaN 1 Median 0.76098 0.72128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4212000 2317900 1894000 4212000 2317900 1894000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29392 91 30903 153781 154604;154605 154604 2 SALGDDINFEK EIHAMKELKPDIVTKSALGDDINFEKIFKK IVTKSALGDDINFEKIFKKPDSTATERAIA K S A E K I 1 0 1 2 0 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1207.5721 Q8NEF9 Q8NEF9 76 86 SRFBP1 Serum response factor-binding protein 1 yes yes 2 0.017703 35.908 By MS/MS By matching 1 1 0.73623 0.67864 90.814 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3198 1.2898 NaN 1 0 Median 0.41071 0.35707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10186000 4012100 6174000 0 0 0 0 0 0 9634700 3555000 6079700 551440 457160 94282 0 0 0 0 0 0 29393 3429 30904 153782;153783 154606 154606 1 SALGPGVPHIINTK DTLIKFRAHRVVKRKSALGPGVPHIINTKL KSALGPGVPHIINTKLLKHFTCLTYNNGRL K S A T K L 1 0 1 0 0 0 0 2 1 2 1 1 0 0 2 1 1 0 0 1 0 0 14 0 1402.7932 Q9GZS1 Q9GZS1 296 309 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2;3 0.00027877 58.132 By matching By MS/MS By matching 1 2 2 0.84171 0.75497 13.201 5 Median NaN NaN NaN 0 0 Median 1.0509 0.94128 NaN 1 0 Median 0.71078 0.69088 4.3411 2 0 Median 0.87884 0.78602 5.7001 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31535000 17700000 13835000 0 0 0 390090 211020 179080 22666000 12881000 9785000 8478900 4607700 3871100 0 0 0 0 0 0 29394 3913 30905 153784;153785;153786;153787;153788 154607;154608;154609;154610;154611 154608 5 SALIPPVEETVFYPSPYPIR PRRSDPGTSGEAYKRSALIPPVEETVFYPS PVEETVFYPSPYPIRSLIKPLFFTVGINKW R S A I R S 1 1 0 0 0 0 2 0 0 2 1 0 0 1 5 2 1 0 2 2 0 0 20 0 2274.1936 H7C0U0;F8WCQ4;A0A1W2PS40;C9JNP8;A0A1W2PP11;Q9H300 H7C0U0 38 57 PARL Presenilins-associated rhomboid-like protein, mitochondrial;P-beta yes no 2;3 1.2725E-05 48.14 By MS/MS 3 0.49115 0.48261 25.788 3 Plateau 0.49115 0.48261 25.788 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4666600 3236600 1430000 4666600 3236600 1430000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29395 336 30906 153789;153790;153791 154612;154613;154614 154613 3 SALKDTYMLSSTVSSK GWWLFTSWKEKNQDRSALKDTYMLSSTVSS ALKDTYMLSSTVSSKILRAIALKEGFHFEE R S A S K I 1 0 0 1 0 0 0 0 0 0 2 2 1 0 0 5 2 0 1 1 0 0 16 1 1716.8604 Q96G03 Q96G03 367 382 PGM2 Phosphoglucomutase-2 yes yes 2;3 8.7596E-10 108.59 By MS/MS 2 0.72795 0.67929 5.2516 2 Median 0.72795 0.67929 5.2516 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50652000 31699000 18953000 50652000 31699000 18953000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29396 3652 30907 153792;153793 154615;154616;154617 154615 3 SALLALGLK SSWEELASLGLDRLKSALLALGLKCGGTLE GLDRLKSALLALGLKCGGTLEERAQRLFST K S A L K C 2 0 0 0 0 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 884.5695 Q12874 Q12874 265 273 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.0044414 60.682 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 5 1 1.132 1.0998 10.621 12 Median 1.215 1.1559 NaN 1 0 Median 1.2397 1.0891 2.6197 2 0 Median 0.98892 1.0271 11.35 2 0 Median 1.2041 1.0343 NaN 1 0 Median 1.1149 1.1461 10.573 5 0 Median 1.0489 0.89575 NaN 1 0 Median 46374000 20659000 25716000 6979500 2937600 4041900 2293600 997480 1296100 18004000 7618300 10385000 2289500 1030800 1258700 16719000 8036800 8681700 89500 37612 51888 29397 2767 30908 153794;153795;153796;153797;153798;153799;153800;153801;153802;153803;153804;153805 154618;154619;154620;154621;154622;154623;154624;154625;154626;154627 154618 10 SALLDEKR RDELADEITNSASGKSALLDEKRRLEARIA TNSASGKSALLDEKRRLEARIAQLEEELEE K S A K R R 1 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 930.51345 P35580 P35580 1725 1732 MYH10 Myosin-10 yes yes 2 0.010046 75.109 By MS/MS 2 1.3652 1.3075 6.3053 2 Median NaN NaN NaN 0 0 Median 1.3652 1.3075 6.3053 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2503400 943920 1559500 0 0 0 2503400 943920 1559500 0 0 0 0 0 0 0 0 0 0 0 0 29398 2245 30909 153806;153807 154628;154629 154629 2 SALLDFYMK FCTSHKEMDVVSQHKSALLDFYMKNILMSK VVSQHKSALLDFYMKNILMSKVKPPKYLLD K S A M K N 1 0 0 1 0 0 0 0 0 0 2 1 1 1 0 1 0 0 1 0 0 0 9 0 1086.542 Q92616 Q92616 221 229 GCN1L1 Translational activator GCN1 yes yes 2 0.015183 43.808 By MS/MS By matching By matching 1 3 1 1.2551 1.1807 24.259 5 Median 1.2262 1.1807 NaN 1 0 Median 1.4363 1.2602 20.224 3 0 Median 0.75861 0.84091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8513100 3702200 4810900 3807000 1525400 2281700 3980200 1777500 2202700 725840 399270 326570 0 0 0 0 0 0 0 0 0 29399 3544 30910 153808;153809;153810;153811;153812 154630 154630 1 SALLPGPLELQPPR KTLSEVDYAPAGPARSALLPGPLELQPPRG RSALLPGPLELQPPRGLPSDYGRPLSFPPP R S A P R G 1 1 0 0 0 1 1 1 0 0 4 0 0 0 4 1 0 0 0 0 0 0 14 0 1486.8508 O15357;H7BXR2;H0YFZ4 O15357 1143 1156 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.00013419 82.379 By MS/MS 1 0.46263 0.46041 NaN 1 Median 0.46263 0.46041 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2396400 1660900 735550 2396400 1660900 735550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29400 1539 30911 153813 154631 154631 1 SALLPVLHHK KNTGSKIEEDFPHIRSALLPVLHHKSKKGP FPHIRSALLPVLHHKSKKGPPRQAKYAIHC R S A H K S 1 0 0 0 0 0 0 0 2 0 3 1 0 0 1 1 0 0 0 1 0 0 10 0 1113.6659 Q9NTI5 Q9NTI5 708 717 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.0023475 60.59 By MS/MS By matching 1 1 0.61928 0.68101 24.042 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74455 0.80721 NaN 1 0 Median 0.51508 0.57455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5063700 2685400 2378300 0 0 0 0 0 0 4159500 2040900 2118600 904270 644490 259780 0 0 0 0 0 0 29401 4107 30912 153814;153815 154632;154633 154632 2 SALLVQLATAR QEEAGPSNGVAPLPRSALLVQLATARPRPV PLPRSALLVQLATARPRPVKARPLDWRVQS R S A A R P 3 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 11 0 1141.6819 A0A590UJ73;A0A590UJW4;E7EQB3;Q9BSV6;B0V3J0;A9C4B9;A0A0G2JNL0;A0A0G2JNK5 A0A590UJ73 174 184 TSEN34 tRNA-splicing endonuclease subunit Sen34 yes no 2 0.014119 37.191 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.2091 1.0393 22.369 6 Median 1.0771 1.0131 NaN 1 0 Median 0.94992 0.80679 34.356 2 0 Median 1.2157 1.1794 NaN 1 0 Median 1.2475 1.0501 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2637 1.114 NaN 1 0 Median 8840300 4003100 4837100 5863800 2707800 3155900 901970 443420 458550 1888200 775120 1113100 109030 44270 64758 0 0 0 77286 32501 44784 29402 482 30913 153816;153817;153818;153819;153820;153821 154634;154635 154634 2 SALNEVHLVVMR ELGMDKKDVSKKNERSALNEVHLVVMRLLS NERSALNEVHLVVMRLLSVFMSRTKSGSKS R S A M R L 1 1 1 0 0 0 1 0 1 0 2 0 1 0 0 1 0 0 0 3 0 0 12 0 1366.7391 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 3046 3057 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00058963 73.067 By MS/MS By MS/MS By matching 1 1 2 0.88292 0.96176 18.123 4 Linear 0.96907 0.94768 NaN 1 0 Median 1.0688 0.89612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76909 0.68076 7.254 2 0 Median 20842000 10794000 10047000 12856000 6600300 6255900 5752000 2910000 2842000 0 0 0 0 0 0 0 0 0 2233400 1284100 949290 29403 3089 30914 153822;153823;153824;153825 154636;154637 154636 2 SALPYSSFSSDQGLGESSAAPSQPITAVK AGPSEQVNSKAPLSKSALPYSSFSSDQGLG GESSAAPSQPITAVKDMPVRSGGLLPDPPR K S A V K D 4 0 0 1 0 2 1 2 0 1 2 1 0 1 3 8 1 0 1 1 0 0 29 0 2881.3981 P49750;F8VU51;H0YIQ2 P49750 707 735 YLPM1 YLP motif-containing protein 1 yes no 2;3 2.153E-05 32.675 By MS/MS By MS/MS By MS/MS By matching 3 1 3 1 0.56697 0.60745 46.549 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66735 0.73376 26.714 2 0 Median 0.73601 0.66387 NaN 1 0 Median 0.53164 0.55701 60.547 3 0 Median 0.74987 0.64868 NaN 1 0 Median 60168000 40514000 19654000 0 0 0 0 0 0 30785000 22019000 8766400 428450 266410 162040 28813000 18163000 10650000 141610 65905 75704 29404 2395 30915 153826;153827;153828;153829;153830;153831;153832;153833 154638;154639;154640;154641;154642 154640 5 SALQALEMDR GDFRGYCYVEFKEEKSALQALEMDRKSVEG FKEEKSALQALEMDRKSVEGRPMFVSPCVD K S A D R K 2 1 0 1 0 1 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 10 0 1132.5547 A0A499FI31;Q15020 A0A499FI31 776 785 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.011457 42.599 By MS/MS 1 1.5217 1.2771 NaN 1 Median NaN NaN NaN 0 0 Median 1.5217 1.2771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7386900 3081800 4305100 0 0 0 7386900 3081800 4305100 0 0 0 0 0 0 0 0 0 0 0 0 29405 473 30916 153834 154643 154643 1 SALQALEMDRK GDFRGYCYVEFKEEKSALQALEMDRKSVEG KEEKSALQALEMDRKSVEGRPMFVSPCVDK K S A R K S 2 1 0 1 0 1 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 11 1 1260.6496 A0A499FI31;Q15020 A0A499FI31 776 786 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0071829 46.819 By MS/MS 1 0.50961 0.53063 NaN 1 Median 0.50961 0.53063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7328200 5433900 1894400 7328200 5433900 1894400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29406 473 30917 153835 154644 154644 1 SALQELEELK KFHRASVLFANEKYKSALQELEELKQIVPK NEKYKSALQELEELKQIVPKESLVYFLIGK K S A L K Q 1 0 0 0 0 1 3 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1158.6132 G5EA36;I3L394 G5EA36 720 729 CDC27 no no 2 0.0014621 65.305 By matching By MS/MS By matching By matching 1 1 1 2 1.175 1.122 36.019 5 Median 0.97188 0.92865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91492 1.0008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.175 1.1595 NaN 1 0 Median 1.9618 1.6024 50.408 2 0 Median 12545000 6534800 6010600 1885400 1300000 585420 0 0 0 8764200 4482100 4282100 0 0 0 1220700 480370 740340 675080 272330 402750 29407 1135 30918 153836;153837;153838;153839;153840 154645;154646 154646 2 SALQILFSEDSTK NISLKRVSKMPAFLRSALQILFSEDSTKLF LRSALQILFSEDSTKLFVASNQGALHIVQL R S A T K L 1 0 0 1 0 1 1 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 13 0 1437.7351 H3BSH7;Q969X6;A0A0J9YWM9;A0A0J9YWK2;H3BRM8 H3BSH7 453 465 CIRH1A Cirhin yes no 2 0.013272 51.092 By MS/MS By MS/MS 1 1 1.2811 1.344 4.0746 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2269 1.3058 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3376 1.3832 NaN 1 1 Median NaN NaN NaN 0 0 Median 5833100 2466000 3367100 0 0 0 0 0 0 1642600 856770 785780 0 0 0 4190600 1609200 2581300 0 0 0 29408 1234 30919 153841;153842 154647;154648 154647 2 SALQSINEWAAQTTDGK HYNCEHSKINFRDKRSALQSINEWAAQTTD LQSINEWAAQTTDGKLPEVTKDVERTDGAL R S A G K L 3 0 1 1 0 2 1 1 0 1 1 1 0 0 0 2 2 1 0 0 0 0 17 0 1818.8748 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1;E9PQ34 P50454 168 184 SERPINH1 Serpin H1 yes no 2 6.5652E-14 111.79 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.3183 1.1565 11.362 5 Median 1.0471 0.99187 NaN 1 0 Median 1.3572 1.1565 NaN 1 0 Median 1.1103 1.0741 NaN 1 0 Median 1.5448 1.3012 NaN 1 0 Median 1.3183 1.2699 NaN 1 0 Median NaN NaN NaN 0 0 Median 21611000 9975900 11635000 4305200 2041800 2263400 4210600 1862100 2348600 11743000 5475800 6267400 172560 76823 95737 1179200 519410 659770 0 0 0 29409 2414 30920 153843;153844;153845;153846;153847 154649;154650 154649 2 SALQSINEWAAQTTDGKLPEVTK HYNCEHSKINFRDKRSALQSINEWAAQTTD WAAQTTDGKLPEVTKDVERTDGALLVNAMF R S A T K D 3 0 1 1 0 2 2 1 0 1 2 2 0 0 1 2 3 1 0 1 0 0 23 1 2486.2653 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5;E9PNX1 P50454 168 190 SERPINH1 Serpin H1 yes no 3 8.343E-20 89.365 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 0.87166 0.82777 27.181 6 Median NaN NaN NaN 0 0 Median 0.87166 0.80139 2.7517 2 1 Median 0.81089 0.83854 NaN 1 0 Median 1.0624 1.0091 NaN 1 0 Median 0.40874 0.4571 NaN 1 0 Median 0.99543 0.86392 NaN 1 0 Median 129730000 66394000 63336000 0 0 0 38483000 20258000 18225000 72997000 37562000 35436000 13516000 6096600 7419900 355990 237840 118150 4377400 2240000 2137400 29410 2414 30921 153848;153849;153850;153851;153852;153853 154651;154652;154653;154654;154655;154656;154657 154654 7 SALSGHLETVILGLLK AYQRRTKKELASALKSALSGHLETVILGLL ALSGHLETVILGLLKTPAQYDASELKASMK K S A L K T 1 0 0 0 0 0 1 2 1 1 5 1 0 0 0 2 1 0 0 1 0 0 16 0 1649.9716 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9 P07355 89 104 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 2.5341E-10 158.41 By MS/MS By matching By matching 4 1 1 1.229 1.0424 8.9228 6 Median NaN NaN NaN 0 0 Median 1.2147 1.0269 8.5394 4 0 Median 1.2105 1.1676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2689 1.0384 NaN 1 0 Median 24755000 11030000 13726000 0 0 0 22651000 10073000 12579000 1755200 797850 957320 0 0 0 0 0 0 348780 159050 189730 29411 1885 30922 153854;153855;153856;153857;153858;153859 154658;154659;154660 154659 3 SALSSELSLVGDTTGDTLEK PEQSAMLPQLNTPSRSALSSELSLVGDTTG ELSLVGDTTGDTLEKFVEGL__________ R S A E K F 1 0 0 2 0 0 2 2 0 0 4 1 0 0 0 4 3 0 0 1 0 0 20 0 2022.0005 Q92793 Q92793 2418 2437 CREBBP CREB-binding protein yes yes 2 2.3407E-10 93.494 By matching By MS/MS By matching 1 2 1 1.3521 1.205 11.134 4 Median NaN NaN NaN 0 0 Median 1.3633 1.2009 NaN 1 0 Median 1.187 1.2913 17.993 2 0 Median 1.341 1.2091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8953100 4459500 4493500 0 0 0 861950 400690 461260 7933200 3992200 3941000 157890 66625 91263 0 0 0 0 0 0 29412 3557 30923 153860;153861;153862;153863 154661;154662 154662 2 SALTVQFVQGIFVEK REYKLVVLGSGGVGKSALTVQFVQGIFVEK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV K S A E K Y 1 0 0 0 0 2 1 1 0 1 1 1 0 2 0 1 1 0 0 3 0 0 15 0 1664.9138 P61224;P62834;A6NIZ1;F5H7Y6;E7ESV4;F5GX62;F5H004;F5H6R7;F5GYB5;A0A075B6Q0;F5H4H0;F5H500;F5H0B7;F5H491;F5GWU8;F5H077;F5GYH7;F8WBC0 P61224 17 31 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 5.2603E-07 88.187 By MS/MS 1 1.2758 1.0905 NaN 1 Median NaN NaN NaN 0 0 Median 1.2758 1.0905 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 614740 255240 359500 0 0 0 614740 255240 359500 0 0 0 0 0 0 0 0 0 0 0 0 29413 2551 30924 153864 154663 154663 1 SALVKPVTINVGR LFSATMPKKIQNFAKSALVKPVTINVGRAG AKSALVKPVTINVGRAGAASLDVIQEVEYV K S A G R A 1 1 1 0 0 0 0 1 0 1 1 1 0 0 1 1 1 0 0 3 0 0 13 1 1352.814 Q9UJV9 Q9UJV9 388 400 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2;3 0.00016597 81.017 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 1.0688 1.1039 21.201 8 Median 0.99128 0.99526 9.3525 2 0 Median NaN NaN NaN 0 0 Median 1.0014 1.0632 10.594 2 0 Median 1.4295 1.3107 29.927 3 0 Median NaN NaN NaN 0 0 Median 1.6227 1.4734 NaN 1 0 Median 29490000 13265000 16226000 14401000 6522000 7878800 0 0 0 10407000 5108800 5298300 2403900 924480 1479500 0 0 0 2278600 709470 1569100 29414 4299 30925 153865;153866;153867;153868;153869;153870;153871;153872 154664;154665;154666;154667 154665 4 SALYYVDLIGGK HEPFRLGIRFCTNRRSALYYVDLIGGKCEL NRRSALYYVDLIGGKCELLSDDSLAVSSPR R S A G K C 1 0 0 1 0 0 0 2 0 1 2 1 0 0 0 1 0 0 2 1 0 0 12 0 1297.6918 C9JIF9;P13798;H7C393;H7C1U0;C9JLK2 C9JIF9 280 291 APEH Acylamino-acid-releasing enzyme yes no 2 0.00062172 66.435 By matching By MS/MS 1 1 1.1749 1.0665 15.304 2 Median 1.0145 0.95714 NaN 1 0 Median 1.3605 1.1884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11892000 5308500 6583300 4773200 2433100 2340100 7118600 2875500 4243100 0 0 0 0 0 0 0 0 0 0 0 0 29415 699 30926 153873;153874 154668 154668 1 SAMGMFVDAFSK GTDSGCYSAFVVWARSAMGMFVDAFSKQVF WARSAMGMFVDAFSKQVFDSKESLSTAAEC R S A S K Q 2 0 0 1 0 0 0 1 0 0 0 1 2 2 0 2 0 0 0 1 0 0 12 0 1289.5784 Q8IYI6 Q8IYI6 495 506 EXOC8 Exocyst complex component 8 yes yes 2 0.028681 28.958 By MS/MS By matching By matching 1 1 1 1.0616 1.1285 13.9 3 Plateau 1.006 1.0177 NaN 1 0 Median 1.0041 0.907 NaN 1 0 Median 1.1202 1.1961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2732900 1392000 1340900 1070700 546820 523870 349080 164870 184210 1313200 680330 632840 0 0 0 0 0 0 0 0 0 29416 3343 30927 153875;153876;153877 154669 154669 1 SAMMYIQELR LYTSKAGMSQKESSKSAMMYIQELRSGLRD KESSKSAMMYIQELRSGLRDMPLLSCLESL K S A L R S 1 1 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 0 10 0 1240.5944 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28;B4E2I7;A0A2R8YEF8 A0A0G2JH68 144 153 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.00033784 124.23 By MS/MS 1 0.99662 0.93533 NaN 1 Median 0.99662 0.93533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17035000 9357200 7677500 17035000 9357200 7677500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29417 274 30928 153878 154670;154671 154670 2 SAMPEGYVQER FSRYPDHMKQHDFFKSAMPEGYVQERTIFY DFFKSAMPEGYVQERTIFYKDDGNYKTRAE K S A E R T 1 1 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 1 1 0 0 11 0 1265.571 CON__Q9U6Y5;P37840 P37840 226 236 SNCA Alpha-synuclein no no 2 0.0001134 148.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 11 7 7 6 7 1.223 1.2065 74.618 45 Median 0.99895 0.94823 10.191 11 3 Median 1.0227 0.87443 9.8534 9 0 Median 1.1684 1.2065 9.3351 5 0 Median 1.575 1.3155 14.103 7 0 Median 10.653 10.641 81.748 6 2 Plateau 4.0733 3.2382 13.938 7 1 Median 1656400000 722970000 933390000 705600000 341980000 363620000 507790000 248000000 259790000 130930000 58216000 72710000 138140000 52379000 85757000 95539000 9117500 86422000 78371000 13278000 65093000 + 29418 2271;795 30929;30930 153879;153880;153881;153882;153883;153884;153885;153886;153887;153888;153889;153890;153891;153892;153893;153894;153895;153896;153897;153898;153899;153900;153901;153902;153903;153904;153905;153906;153907;153908;153909;153910;153911;153912;153913;153914;153915;153916;153917;153918;153919;153920;153921;153922;153923;153924;153925;153926;153927 154672;154673;154674;154675;154676;154677;154678;154679;154680;154681;154682;154683;154684;154685;154686;154687;154688;154689;154690;154691;154692;154693;154694;154695;154696;154697;154698;154699;154700;154701;154702;154703;154704;154705;154706;154707;154708;154709;154710;154711;154712;154713;154714;154715;154716;154717;154718;154719;154720;154721;154722;154723;154724;154725;154726;154727;154728;154729;154730;154731;154732;154733;154734;154735;154736;154737;154738;154739;154740;154741;154742;154743;154744;154745;154746;154747;154748;154749;154750;154751;154752;154753;154754;154755;154756;154757;154758;154759;154760;154761;154762;154763;154764;154765;154766;154767;154768;154769;154770;154771;154772;154773;154774;154775;154776;154777;154778;154779;154780;154781;154782;154783;154784;154785;154786;154787;154788;154789;154790;154791;154792;154793;154794;154795;154796;154797;154798;154799 154719 298 128 SAMPFTASPASSTTAR SEPQEVLHIGSAHNRSAMPFTASPASSTTA AMPFTASPASSTTARVITNQYNNPAGLYSS R S A A R V 4 1 0 0 0 0 0 0 0 0 0 0 1 1 2 4 3 0 0 0 0 0 16 0 1581.7457 O00151 O00151 123 138 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 1.106E-10 109.24 By MS/MS By MS/MS By MS/MS By matching 4 5 1 2 0.80119 0.79746 33.606 12 Median 0.71486 0.69353 14.95 4 0 Median 0.96991 0.84327 45.62 5 1 Median NaN NaN NaN 0 0 Median 0.99554 0.88497 NaN 1 0 Median 0.70536 0.75229 45.926 2 0 Median NaN NaN NaN 0 0 Median 149260000 85451000 63810000 124140000 71849000 52290000 20828000 11226000 9602700 0 0 0 1360300 657730 702560 2934000 1719400 1214600 0 0 0 29419 1442 30931;30932 153928;153929;153930;153931;153932;153933;153934;153935;153936;153937;153938;153939 154800;154801;154802;154803;154804;154805;154806;154807;154808;154809;154810;154811;154812;154813;154814 154806 464 15 SAMPIEVMMNETAQQNMENHPVIR DASIKILDTERMLAKSAMPIEVMMNETAQQ NETAQQNMENHPVIRTLYDHVDEVTCLAFH K S A I R T 2 1 3 0 0 2 3 0 1 2 0 0 4 0 2 1 1 0 0 2 0 0 24 0 2769.2707 Q05048;A0A0A0MSZ9 Q05048 144 167 CSTF1 Cleavage stimulation factor subunit 1 yes no 3 3.0364E-18 79.783 By MS/MS By MS/MS 3 2 0.70152 0.6933 15.17 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64055 0.62951 6.1207 3 1 Median 0.96633 0.83854 5.7631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58081000 33745000 24336000 0 0 0 0 0 0 47269000 29349000 17919000 10813000 4395600 6417000 0 0 0 0 0 0 29420 2716 30933;30934;30935;30936 153940;153941;153942;153943;153944 154815;154816;154817;154818;154819 154815 1404;1405;1406 5 SAMQSVVDDWIESYKHDR GVENMMLFEVVKMGKSAMQSVVDDWIESYK QSVVDDWIESYKHDRDIALLDLINFFIQCS K S A D R D 1 1 0 3 0 1 1 0 1 1 0 1 1 0 0 3 0 1 1 2 0 0 18 1 2164.9848 Q8N3U4;B1AMT4;B1AMT2;B1AMT3;B1AMT1;B1AMT0 Q8N3U4 93 110 STAG2 Cohesin subunit SA-2 yes no 3;4 0.055881 19.553 By MS/MS 2 0.92201 1.0505 6.5631 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92201 1.0505 6.5631 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4053800 2134400 1919400 0 0 0 0 0 0 4053800 2134400 1919400 0 0 0 0 0 0 0 0 0 29421 3369 30937 153945;153946 154820;154821 154821 2 SAMSVQSSLVMHPIYAYGSEEQR GLLARELERVDSGYRSAMSVQSSLVMHPIY LVMHPIYAYGSEEQRQKYLPQLAKGELLGC R S A Q R Q 2 1 0 0 0 2 2 1 1 1 1 0 2 0 1 5 0 0 2 2 0 0 23 0 2569.1941 Q92947;K7EKH1;K7EKT3 Q92947 139 161 GCDH Glutaryl-CoA dehydrogenase, mitochondrial yes no 3 2.0782E-05 37.065 By MS/MS By matching 1 1 0.76747 0.72207 9.8282 2 Median 0.67956 0.6736 NaN 1 0 Median 0.86674 0.77404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6331300 3939900 2391400 6032200 3787000 2245200 299040 152830 146210 0 0 0 0 0 0 0 0 0 0 0 0 29422 3569 30938 153947;153948 154822;154823 154823 2 SANAFLTPSYTWTPLK LDGLKTYQVTPMTPRSANAFLTPSYTWTPL ANAFLTPSYTWTPLKTEVDESQATKEILAQ R S A L K T 2 0 1 0 0 0 0 0 0 0 2 1 0 1 2 2 3 1 1 0 0 0 16 0 1795.9145 Q15398 Q15398 332 347 DLGAP5 Disks large-associated protein 5 yes yes 2 0.0080407 29.341 By MS/MS 1 0.90175 0.9921 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90175 0.9921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3744400 1886500 1857900 0 0 0 0 0 0 3744400 1886500 1857900 0 0 0 0 0 0 0 0 0 29423 2948 30939 153949 154824 154824 1 SANAFLTPSYTWTPLKTEVDESQATK LDGLKTYQVTPMTPRSANAFLTPSYTWTPL WTPLKTEVDESQATKEILAQKCKTYSTKTI R S A T K E 3 0 1 1 0 1 2 0 0 0 2 2 0 1 2 3 5 1 1 1 0 0 26 1 2884.4131 Q15398 Q15398 332 357 DLGAP5 Disks large-associated protein 5 yes yes 3 0.041123 11.417 By MS/MS 1 1.0716 1.2264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0716 1.2264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2391900 1222800 1169100 0 0 0 0 0 0 2391900 1222800 1169100 0 0 0 0 0 0 0 0 0 29424 2948 30940 153950 154825;154826 154825 2 SANLVAATLGAILNR DCVSVQHVCTIVSFRSANLVAATLGAILNR SANLVAATLGAILNRLRDNKGTPRLRTTVG R S A N R L 4 1 2 0 0 0 0 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 15 0 1482.8518 P19367 P19367 382 396 HK1 Hexokinase-1 yes yes 3 0.057567 10.787 By MS/MS By matching 1 2 1.1259 1.109 8.5464 3 Median 1.1259 1.109 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0484 1.0967 12.052 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2825600 1351200 1474300 2249000 1091100 1157900 0 0 0 576520 260130 316390 0 0 0 0 0 0 0 0 0 29425 2064 30941 153951;153952;153953 154827 154827 1 SANMDHWQQR SAVTVMFDKVQFSNKSANMDHWQQRFPTHV QFSNKSANMDHWQQRFPTHVKDVATVCRQL K S A Q R F 1 1 1 1 0 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 10 0 1271.5466 Q9NZL9;H7C0X7 Q9NZL9 210 219 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 3 0.019759 25.437 By MS/MS By MS/MS 1 1 0.99176 0.92968 7.9106 2 Median 0.95932 0.98317 NaN 1 0 Median 1.0253 0.87911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1828100 848810 979320 608050 243230 364810 1220100 605580 614500 0 0 0 0 0 0 0 0 0 0 0 0 29426 4191 30942 153954;153955 154828;154829 154829 2 SANPAMQLDR SPQFTQLLVSRYCPRSANPAMQLDRFIQVC RYCPRSANPAMQLDRFIQVCTQLQVLTEAF R S A D R F 2 1 1 1 0 1 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 10 0 1101.5237 Q9UBV8 Q9UBV8 233 242 PEF1 Peflin yes yes 2 0.0007841 71.349 By MS/MS By MS/MS 1 1 1.0837 0.95775 0.93009 2 Median 1.0299 0.96407 NaN 1 0 Median 1.1403 0.95148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16939000 8259300 8679400 12565000 6224700 6340500 4373400 2034500 2338900 0 0 0 0 0 0 0 0 0 0 0 0 29427 4251 30943 153956;153957 154830;154831;154832;154833 154832 4 SANPPHTIQASEEQSSTPAPVK EDAIASSDVLETASKSANPPHTIQASEEQS IQASEEQSSTPAPVKKSGKLRQQIDVKAEL K S A V K K 3 0 1 0 0 2 2 0 1 1 0 1 0 0 4 4 2 0 0 1 0 0 22 0 2275.1081 B7Z524;H0YDX7;J3QT46;Q9Y450;E9PHZ9;E9PS53 B7Z524 51 72 HBS1L HBS1-like protein yes no 3 2.2311E-05 54.223 By MS/MS By MS/MS 1 2 0.52998 0.45967 38.055 3 Median NaN NaN NaN 0 0 Median 0.96954 0.84592 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.50616 0.43959 6.3177 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4604800 3066600 1538200 0 0 0 2891700 1913800 977950 0 0 0 1713000 1152800 560250 0 0 0 0 0 0 29428 632 30944 153958;153959;153960 154834;154835;154836 154834 3 SANPPHTIQASEEQSSTPAPVKK EDAIASSDVLETASKSANPPHTIQASEEQS QASEEQSSTPAPVKKSGKLRQQIDVKAELE K S A K K S 3 0 1 0 0 2 2 0 1 1 0 2 0 0 4 4 2 0 0 1 0 0 23 1 2403.203 B7Z524;H0YDX7;J3QT46;Q9Y450;E9PHZ9;E9PS53 B7Z524 51 73 HBS1L HBS1-like protein yes no 4 0.00058841 26.627 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.51323 0.521 9.4085 4 Median 0.48726 0.52726 NaN 1 0 Median 0.54058 0.51481 NaN 1 0 Median 0.45064 0.5123 NaN 1 0 Median 0.62456 0.62429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9862200 6248100 3614000 2522900 1548400 974480 4453200 2808800 1644400 2194500 1515100 679410 691530 375820 315710 0 0 0 0 0 0 29429 632 30945 153961;153962;153963;153964 154837;154838;154839;154840;154841;154842;154843 154842 7 SANSELGGIWSVGQR NNARYLWKRIPPAIKSANSELGGIWSVGQR SANSELGGIWSVGQRIWQRDFPGIYTTINA K S A Q R I 1 1 1 0 0 1 1 3 0 1 1 0 0 0 0 3 0 1 0 1 0 0 15 0 1559.7692 Q99627;E9PGT6 Q99627 66 80 COPS8 COP9 signalosome complex subunit 8 yes no 2 4.9486E-26 142.07 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 1 1 1.2016 1.0712 25.479 6 Median 1.1088 1.0771 NaN 1 0 Median 1.1707 0.98615 12.928 2 0 Median 1.1091 1.0654 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7734 1.8761 NaN 1 1 Median 1.311 1.0319 NaN 1 0 Median 32146000 15046000 17101000 10877000 5297800 5579400 2888300 1293100 1595200 15447000 7367800 8079100 0 0 0 2694500 974360 1720200 239350 112460 126890 29430 927 30946 153965;153966;153967;153968;153969;153970;153971;153972 154844;154845;154846;154847;154848;154849 154844 6 SANVNEFPVLK NLTEFFVNHILPDLKSANVNEFPVLKADGI PDLKSANVNEFPVLKADGIKYIMIFRNQVP K S A L K A 1 0 2 0 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 11 0 1216.6452 P55060 P55060 471 481 CSE1L Exportin-2 yes yes 2 0.00047715 68.893 By MS/MS By MS/MS 1 2 1.2187 1.0324 5.581 3 Median 1.0268 0.98499 NaN 1 0 Median 1.2389 1.066 4.5395 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63311000 30316000 32995000 42638000 21182000 21456000 20673000 9134400 11539000 0 0 0 0 0 0 0 0 0 0 0 0 29431 2493 30947 153973;153974;153975 154850;154851;154852;154853;154854 154851 5 SAPASPNHAGVLSAHSSGAQTPESLSR GVPCFRTPLGPLSSRSAPASPNHAGVLSAH SAHSSGAQTPESLSREGSPAPLEPEPGAAQ R S A S R E 5 1 1 0 0 1 1 2 2 0 2 0 0 0 3 7 1 0 0 1 0 0 27 0 2615.2688 Q01167 Q01167 369 395 FOXK2 Forkhead box protein K2 yes yes 4 2.1206E-05 37.673 By MS/MS 1 0.69976 0.60301 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69976 0.60301 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3040200 1630700 1409500 0 0 0 0 0 0 0 0 0 3040200 1630700 1409500 0 0 0 0 0 0 29432 2684 30948 153976 154855 154855 1 SAPASQASLR VEEPDSANSSFYSTRSAPASQASLRATSST FYSTRSAPASQASLRATSSTQSLARLGSPD R S A L R A 3 1 0 0 0 1 0 0 0 0 1 0 0 0 1 3 0 0 0 0 0 0 10 0 986.51451 A0A087WY61;Q14980 Q14980 1840 1849 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00060699 72.928 By matching By MS/MS By matching By MS/MS By matching 2 2 2 1 1 1.0581 0.99161 29.339 8 Median NaN NaN NaN 0 0 Median 1.2266 1.1123 4.2527 2 0 Median 0.84153 0.97792 13.574 2 0 Median 1.4517 1.3364 57.78 2 0 Median 0.73339 0.77031 NaN 1 0 Median 1.0912 0.91347 NaN 1 0 Median 8089400 4160800 3928700 0 0 0 1727300 742520 984820 2481200 1340500 1140700 287980 115860 172110 2906400 1671500 1234900 686560 290410 396150 29433 2905;77 30949 153977;153978;153979;153980;153981;153982;153983;153984 154856;154857;154858 154857 3 SAPDTELVNVTHLNTEVK GLESKKLPRSVKLEKSAPDTELVNVTHLNT DTELVNVTHLNTEVKNSSDTGKVKLDENSE K S A V K N 1 0 2 1 0 0 2 0 1 0 2 1 0 0 1 1 3 0 0 3 0 0 18 0 1966.0007 Q9NYV4;J3QSD7 Q9NYV4 456 473 CDK12 Cyclin-dependent kinase 12 yes no 3 8.2472E-05 40.179 By MS/MS By MS/MS By matching 1 1 1 0.85156 0.78078 15.172 3 Median 0.71975 0.69519 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85156 0.9392 NaN 1 0 Median 0.8593 0.78078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22595000 12052000 10543000 7981800 4323800 3658000 0 0 0 13884000 7353700 6530300 729230 374180 355050 0 0 0 0 0 0 29434 4180 30950 153985;153986;153987 154859;154860;154861 154861 3 SAPFFIPTIPGLVPR IKKKNKPKEPPKVPKSAPFFIPTIPGLVPR SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV K S A P R Y 1 1 0 0 0 0 0 1 0 2 1 0 0 2 4 1 1 0 0 1 0 0 15 0 1610.9184 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 730 744 WDR36 WD repeat-containing protein 36 yes no 2 0.045984 23.605 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 4 1 1 1 0.65472 0.72193 13.684 10 Median 0.81119 0.80977 7.3022 2 0 Median 0.92698 0.78531 NaN 1 0 Median 0.64668 0.71112 4.1005 4 0 Median 0.87073 0.75433 NaN 1 0 Median 0.59226 0.62799 NaN 1 0 Median 0.59053 0.5222 NaN 1 0 Median 13617000 7929900 5687000 1955900 961160 994730 1382900 736580 646370 9377400 5682900 3694500 129460 72507 56956 670950 416650 254310 100330 60192 40136 29435 188 30951 153988;153989;153990;153991;153992;153993;153994;153995;153996;153997 154862;154863;154864 154862 3 SAPLEIGLQR GYLNGEASTSASIDRSAPLEIGLQRSTQVK ASIDRSAPLEIGLQRSTQVKRAADEVLAEA R S A Q R S 1 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1082.6084 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3;A0A2R8Y640 Q6P1J9 111 120 CDC73 Parafibromin yes no 2 0.00060363 114.28 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.95452 0.87661 26.657 5 Median 0.84176 0.80942 NaN 1 1 Median 1.304 1.1289 43.759 2 0 Median 0.87852 0.87661 NaN 1 0 Median 1.0879 0.90976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27801000 13694000 14107000 6944700 3787600 3157100 3815400 1236700 2578700 14090000 7277400 6812600 2950600 1392400 1558100 0 0 0 0 0 0 29436 3150 30952 153998;153999;154000;154001;154002 154865;154866;154867;154868;154869;154870 154867 6 SAPLLLPGR SGSLIAYGKLQGLLKSAPLLLPGRHLLNAG LQGLLKSAPLLLPGRHLLNAGLLAASVGGI K S A G R H 1 1 0 0 0 0 0 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 9 0 922.56 Q13423;E9PCX7;A0A590UK15 Q13423 769 777 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0037963 62.659 By matching By MS/MS 1 3 0.89737 0.73775 31.121 4 Median 0.54577 0.53383 NaN 1 0 Median 1.0774 0.86223 26.506 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34348000 18510000 15838000 12702000 8329500 4372200 21646000 10181000 11465000 0 0 0 0 0 0 0 0 0 0 0 0 29437 2814 30953 154003;154004;154005;154006 154871;154872;154873 154872 3 SAPPQLPSFYK HSAFGATSSSSGFGKSAPPQLPSFYKIGSK GFGKSAPPQLPSFYKIGSKRANFDEENAYF K S A Y K I 1 0 0 0 0 1 0 0 0 0 1 1 0 1 3 2 0 0 1 0 0 0 11 0 1233.6394 Q86XP3;J3QRI2;J3KTK9 Q86XP3 51 61 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.04167 27.329 By MS/MS By matching 1 1 0.96717 1.0466 75.396 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55858 0.6141 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6746 1.7837 NaN 1 0 Median NaN NaN NaN 0 0 Median 7960100 3911900 4048200 0 0 0 0 0 0 6289200 3576300 2712800 0 0 0 1670900 335590 1335300 0 0 0 29438 3302 30954 154007;154008 154874;154875 154874 2 SAPSRPQQAGYEAPVLFR KKLLHTMNVPSLFSKSAPSRPQQAGYEAPV SRPQQAGYEAPVLFRTEDYFPCCSERPQL_ K S A F R T 3 2 0 0 0 2 1 1 0 0 1 0 0 1 3 2 0 0 1 1 0 0 18 1 1973.0119 Q9NUP1 Q9NUP1 186 203 BLOC1S4 Biogenesis of lysosome-related organelles complex 1 subunit 4 yes yes 3 1.7188E-06 69.605 By MS/MS By matching By matching 1 1 1 0.75211 0.71376 6.2765 3 Median 0.64617 0.69071 NaN 1 0 Median 0.84044 0.71376 NaN 1 0 Median 0.75211 0.77982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20664000 11859000 8804500 15561000 9015200 6545800 1515400 847670 667770 3587200 1996300 1590900 0 0 0 0 0 0 0 0 0 29439 4116 30955 154009;154010;154011 154876;154877 154877 2 SAPVMLTLSDSK YHPRDQNKVLVCPMKSAPVMLTLSDSKHVV PMKSAPVMLTLSDSKHVVLPVDDDSDLNVV K S A S K H 1 0 0 1 0 0 0 0 0 0 2 1 1 0 1 3 1 0 0 1 0 0 12 0 1247.6431 Q15291 Q15291 130 141 RBBP5 Retinoblastoma-binding protein 5 yes yes 2 0.050856 43.512 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29440 2939 30956 154012 154878 154878 1 SAQAFTHLK WSQKCLQDNNWDYTRSAQAFTHLKAKGEIP NWDYTRSAQAFTHLKAKGEIPEVAFMK___ R S A L K A 2 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1001.5294 Q9UBU9;H0YDU0 Q9UBU9 599 607 NXF1 Nuclear RNA export factor 1 yes no 2 0.0057315 56.729 By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 2 1.2466 1.1057 24.705 8 Median NaN NaN NaN 0 0 Median 1.3045 1.1222 NaN 1 0 Median 0.89977 0.92614 48.202 2 0 Median 1.0771 0.93556 21.526 2 0 Median 1.3079 1.3438 NaN 1 0 Median 1.2346 1.035 17.198 2 0 Median 9069700 4111300 4958400 0 0 0 3052000 1256800 1795300 2874000 1281500 1592500 646190 270810 375380 1403800 700270 703560 1093700 602020 491680 29441 4249 30957 154013;154014;154015;154016;154017;154018;154019;154020 154879;154880 154880 2 SAQFFNYK TVATKETEGFRRFKRSAQFFNYKIQALGLG GFRRFKRSAQFFNYKIQALGLGEDWNVEKG R S A Y K I 1 0 1 0 0 1 0 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 8 0 1003.4763 Q02809;Q5JXB8;Q5JXB7 Q02809 47 54 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes no 2 0.064877 47.067 By MS/MS 1 1.935 2.0538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.935 2.0538 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2253300 903890 1349400 0 0 0 0 0 0 2253300 903890 1349400 0 0 0 0 0 0 0 0 0 29442 2702 30958 154021 154881 154881 1 SAQGSSSPVPSMVQK SVPLKSSVLPSPSGRSAQGSSSPVPSMVQK SAQGSSSPVPSMVQKSPRITPPAAKPGSPQ R S A Q K S 1 0 0 0 0 2 0 1 0 0 0 1 1 0 2 5 0 0 0 2 0 0 15 0 1488.7242 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 639 653 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.00035327 57.225 By MS/MS By matching 1 1 0.96591 0.9707 35.31 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68043 0.75622 NaN 1 0 Median 1.3712 1.246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8225400 4896500 3328800 0 0 0 0 0 0 6798300 4330900 2467400 1427100 565610 861450 0 0 0 0 0 0 29443 467 30959 154022;154023 154882;154883 154883 2 SAQIADLQQK ITKQIESLETEMEFRSAQIADLQQKLLDAE EMEFRSAQIADLQQKLLDAESEDRPKQRWE R S A Q K L 2 0 0 1 0 3 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1100.5826 O95239;Q2VIQ3 O95239 831 840 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0029582 58.433 By MS/MS By matching 1 1 1.0675 1.0227 15.762 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85394 0.91485 NaN 1 0 Median 1.3346 1.1433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10972000 4730200 6241400 0 0 0 0 0 0 7987400 3366100 4621200 2984200 1364100 1620100 0 0 0 0 0 0 29444 1757 30960 154024;154025 154884 154884 1 SAQPLPLKIEELALAK ADYSAQKDLEPESDRSAQPLPLKIEELALA AQPLPLKIEELALAKGITEECLKQPSLEQK R S A A K G 3 0 0 0 0 1 2 0 0 1 4 2 0 0 2 1 0 0 0 0 0 0 16 1 1720.0135 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 467 482 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.01011 37.426 By MS/MS 1 0.69347 0.7446 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69347 0.7446 NaN 1 0 Median NaN NaN NaN 0 0 Median 5926300 3428300 2497900 0 0 0 0 0 0 0 0 0 0 0 0 5926300 3428300 2497900 0 0 0 29445 4560 30961 154026 154885 154885 1 SAQTFLSEIR ALYVYEYLLHVGAQKSAQTFLSEIRWEKNI VGAQKSAQTFLSEIRWEKNITLGEPPGFLH K S A I R W 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1150.5982 A0A087WVT6;Q9BWW4;D6RAC5;U3KQ46;Q9BWG4 A0A087WVT6 28 37 SSBP3;SSBP2;SSBP4 Single-stranded DNA-binding protein 3;Single-stranded DNA-binding protein 4 no no 2 0.00063896 72.643 By matching By MS/MS By matching By matching 1 2 2 1 1.2365 1.1773 15.876 6 Median 1.0305 1.029 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.061 1.1063 3.2249 2 0 Median 1.4409 1.2546 3.4181 2 0 Median NaN NaN NaN 0 0 Median 1.5144 1.6024 NaN 1 0 Median 23477000 11200000 12277000 3012700 1585800 1426900 0 0 0 18985000 9054300 9930300 1397600 536750 860900 0 0 0 82254 23555 58699 29446 45;3871 30962 154027;154028;154029;154030;154031;154032 154886;154887;154888;154889 154887 4 SAQVAQSLLK LLTRLLQALHIDGPRSAQVAQSLLKEEASW IDGPRSAQVAQSLLKEEASWQQSHHQFRKR R S A L K E 2 0 0 0 0 2 0 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1043.5975 Q9NU22 Q9NU22 3361 3370 MDN1 Midasin yes yes 2 0.050975 43.651 By MS/MS 1 0.79596 0.85283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79596 0.85283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7930700 3169400 4761300 0 0 0 0 0 0 7930700 3169400 4761300 0 0 0 0 0 0 0 0 0 29447 4112 30963 154033 154890 154890 1 SASAPAAEGEGTPTQPASEK ______________________________ AAEGEGTPTQPASEKEPEMPGPREESEEEE M S A E K E 5 0 0 0 0 1 3 2 0 0 0 1 0 0 3 3 2 0 0 0 0 0 20 0 1884.8701 H0Y993;P35659;B4DFG0;H0Y8X0;A0A494C198;D6R9L5 H0Y993 2 21 DEK Protein DEK yes no 2 2.6721E-19 105.19 By MS/MS By MS/MS 1 1 0.60343 0.55274 5.7527 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54409 0.53071 NaN 1 1 Median 0.66924 0.57569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9100500 5865500 3235100 0 0 0 0 0 0 7437500 4756400 2681100 1663100 1109100 554010 0 0 0 0 0 0 29448 1166 30964 154034;154035 154891;154892 154891 2 SASAPAAEGEGTPTQPASEKEPEMPGPR ______________________________ TQPASEKEPEMPGPREESEEEEDEDDEEEE M S A P R E 5 1 0 0 0 1 5 3 0 0 0 1 1 0 6 3 2 0 0 0 0 0 28 1 2778.2767 H0Y993;P35659;B4DFG0;H0Y8X0;A0A494C198;D6R9L5 H0Y993 2 29 DEK Protein DEK yes no 2;3 8.3115E-131 191.18 By MS/MS By MS/MS 4 5 0.57405 0.54523 42.956 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35288 0.38035 27.033 4 1 Median 0.63189 0.59295 30.473 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 324820000 256720000 68102000 0 0 0 0 0 0 258670000 212950000 45720000 66150000 43769000 22382000 0 0 0 0 0 0 29449 1166 30965;30966 154036;154037;154038;154039;154040;154041;154042;154043;154044 154893;154894;154895;154896;154897;154898;154899;154900;154901;154902;154903;154904 154902 389 12 SASKPIGFEGDLR QSKQEQSAKATADRKSASKPIGFEGDLRGQ RKSASKPIGFEGDLRGQSSDLPERLHSQEV K S A L R G 1 1 0 1 0 0 1 2 0 1 1 1 0 1 1 2 0 0 0 0 0 0 13 1 1375.7096 Q9H981;H0Y849 Q9H981 444 456 ACTR8 Actin-related protein 8 yes no 3 0.0063537 30.998 By MS/MS By matching 1 1 0.84621 0.83463 15.129 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87549 0.92887 NaN 1 0 Median 0.81792 0.74995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5396500 2834900 2561600 0 0 0 0 0 0 4773100 2472100 2300900 623410 362740 260670 0 0 0 0 0 0 29450 3994 30967 154045;154046 154905 154905 1 SASLDLLLR RISSCLDFEQHSRERSASLDLLLRFQRLLI QHSRERSASLDLLLRFQRLLISKLYPGESI R S A L R F 1 1 0 1 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0 9 0 986.57605 O95714 O95714 1048 1056 HERC2 E3 ubiquitin-protein ligase HERC2 yes yes 2 0.029888 36.395 By MS/MS By matching 1 1 1.6672 1.623 14.502 2 Median 1.777 1.7983 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5642 1.4648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2871300 996730 1874600 2119200 656330 1462900 0 0 0 752060 340400 411660 0 0 0 0 0 0 0 0 0 29451 1786 30968 154047;154048 154906 154906 1 SASLSSAATTGLTTQQR TSGSHNLGAQQTSARSASLSSAATTGLTTQ SLSSAATTGLTTQQRTAIENATVAFFLQCI R S A Q R T 3 1 0 0 0 2 0 1 0 0 2 0 0 0 0 4 4 0 0 0 0 0 17 0 1678.8486 A0A3B3IUB9;Q9NR09 Q9NR09 3740 3756 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 3.5255E-12 147.24 By MS/MS By MS/MS 1 1 1.1018 1.0065 0.22198 2 Median 1.02 1.008 NaN 1 0 Median 1.1901 1.0049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12407000 5999000 6408200 7854200 4011100 3843100 4553000 1987900 2565100 0 0 0 0 0 0 0 0 0 0 0 0 29452 4073;445 30969 154049;154050 154907;154908;154909 154907 3 SASPFNLAEKPK IPTLFHMKYPVESSKSASPFNLAEKPKTVQ SSKSASPFNLAEKPKTVQLLLDFMLDVLLM K S A P K T 2 0 1 0 0 0 1 0 0 0 1 2 0 1 2 2 0 0 0 0 0 0 12 1 1287.6823 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 157 168 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2;3 0.00078364 62.303 By MS/MS By matching By matching 2 1 1 0.59722 0.58519 12.722 4 Median 0.59722 0.58371 11.66 2 1 Median 0.72002 0.69701 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52811 0.54024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16873000 10313000 6559800 13686000 8651400 5034500 2686800 1431200 1255600 0 0 0 500010 230250 269760 0 0 0 0 0 0 29453 3116 30970 154051;154052;154053;154054 154910;154911 154910 2 SASSASSLFSPSSTLFSSSR GRYISAAPGAEAKYRSASSASSLFSPSSTL SSLFSPSSTLFSSSRLRYGMSDVMPSGRSR R S A S R L 2 1 0 0 0 0 0 0 0 0 2 0 0 2 1 11 1 0 0 0 0 0 20 0 1991.9436 Q5T1Z4;Q5T1Z8;H0YDK8;E9PR38;H0YEH2;Q14671 Q5T1Z4 798 817 PUM1 Pumilio homolog 1 yes no 2 0.0019599 27.969 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0478 1.0033 10.98 5 Median 1.0478 1.0287 NaN 1 0 Median 0.90445 0.79834 NaN 1 0 Median 0.94213 1.0267 NaN 1 1 Median 1.1508 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0678 0.902 NaN 1 0 Median 4967600 2516000 2451700 2459700 1167000 1292700 215180 126210 88967 1793200 949190 844040 312100 178380 133710 0 0 0 187420 95183 92240 29454 3081 30971 154055;154056;154057;154058;154059 154912;154913 154912 2 SASSEEASESPTAR TPVKPTEPCTPSKSRSASSEEASESPTARQ RSASSEEASESPTARQIPPEARRLIVNKNA R S A A R Q 3 1 0 0 0 0 3 0 0 0 0 0 0 0 1 5 1 0 0 0 0 0 14 0 1407.6114 A0A075B6Q3 A0A075B6Q3 1067 1080 BCORL1 yes yes 2 0.037279 25.474 By MS/MS 1 0.84212 0.93922 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84212 0.93922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 704620 360470 344150 0 0 0 0 0 0 704620 360470 344150 0 0 0 0 0 0 0 0 0 29455 9 30972 154060 154914 154914 1 SASSGAEGDVSSEREP SESSKERNTPRKEDRSASSGAEGDVSSERE ASSGAEGDVSSEREP_______________ R S A E P - 2 1 0 1 0 0 3 2 0 0 0 0 0 0 1 5 0 0 0 1 0 0 16 1 1563.6649 Q8TEA8 Q8TEA8 194 209 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 2 4.1509E-10 165.7 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.87087 0.78036 13.361 4 Median 0.76797 0.72783 NaN 1 0 Median 0.98755 0.83668 NaN 1 0 Median 0.75629 0.72653 NaN 1 0 Median 1.1565 0.96114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35362000 18111000 17251000 9678800 5139400 4539400 2825600 1321700 1504000 15471000 8490300 6980500 7387100 3159600 4227500 0 0 0 0 0 0 29456 3476 30973 154061;154062;154063;154064 154915;154916;154917;154918;154919;154920;154921;154922;154923 154923 9 SASSLLEQRPK ______________________________ ______________________________ M S A P K G 1 1 0 0 0 1 1 0 0 0 2 1 0 0 1 3 0 0 0 0 0 0 11 1 1214.6619 Q9Y5A9;S4R3V3;S4R3J8 Q9Y5A9 2 12 YTHDF2 YTH domain-containing family protein 2 yes no 2 3.3232E-07 105.4 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.254 1.2179 25.205 4 Median 1.7883 1.7927 NaN 1 0 Median 1.0825 0.99031 NaN 1 0 Median 1.0839 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4509 1.2889 NaN 1 0 Median 28845000 13033000 15812000 15663000 7054600 8608500 4856100 2325900 2530200 7500700 3437500 4063200 0 0 0 0 0 0 825270 215370 609900 29457 4454 30974 154065;154066;154067;154068 154924;154925 154924 1 SASVVSVISR ______________________________ ______________________________ M S A S R F 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 3 0 0 10 0 1003.5662 F5GXX5;P61803;F5H895;A0A0B4J239 F5GXX5 2 11 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes no 2 4.0862E-07 161.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 4 3 3 2 1.2044 1.1118 10.258 23 Median 1.1446 1.0767 7.2346 5 0 Median 1.2982 1.0679 9.8554 6 0 Median 1.127 1.1311 5.9756 4 0 Median 1.4941 1.1475 6.6933 3 1 Plateau 1.4401 1.4799 12.33 3 0 Plateau 1.5094 1.176 8.9502 2 0 Median 555240000 244690000 310540000 175490000 81174000 94315000 188350000 77540000 110810000 159040000 72862000 86177000 17463000 7012000 10451000 12867000 5285600 7581200 2023300 821180 1202100 29458 1010 30975;30976 154069;154070;154071;154072;154073;154074;154075;154076;154077;154078;154079;154080;154081;154082;154083;154084;154085;154086;154087;154088;154089;154090;154091 154926;154927;154928;154929;154930;154931;154932;154933;154934;154935;154936;154937;154938;154939;154940;154941;154942;154943;154944;154945;154946;154947;154948;154949;154950;154951;154952;154953;154954;154955;154956 154937 31 SATAATAPPAAPAGEGGPPAPPPNLTSNR ______________________________ EGGPPAPPPNLTSNRRLQQTQAQVDEVVDI M S A N R R 8 1 2 0 0 0 1 3 0 0 1 0 0 0 8 2 3 0 0 0 0 0 29 0 2637.3147 J3QRU4;F8WCA0;L7N2F9;P63027 J3QRU4 2 30 VAMP2 Vesicle-associated membrane protein 2 yes no 3 1.5437E-09 52.329 By MS/MS 1 0.25751 0.25846 NaN 1 Median 0.25751 0.25846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2207800 1905300 302450 2207800 1905300 302450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29459 1095 30977 154092 154957 154957 1 SATEQSGTGIR TVGVFAKATAQDNPKSATEQSGTGIRSESE DNPKSATEQSGTGIRSESETESEASEITIP K S A I R S 1 1 0 0 0 1 1 2 0 1 0 0 0 0 0 2 2 0 0 0 0 0 11 0 1105.5364 O95831;E9PMA0 O95831 519 529 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.00065281 65.305 By MS/MS By MS/MS By matching 1 1 1 1.0352 1.0424 18.424 3 Median 0.98809 1.0015 NaN 1 0 Median 1.6186 1.4032 NaN 1 0 Median 1.0352 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3675300 1481300 2194000 999420 483920 515500 2595300 964120 1631200 80492 33239 47253 0 0 0 0 0 0 0 0 0 29460 1797 30978 154093;154094;154095 154958;154959;154960 154959 3 SATIVADLSETTIQTPDGEER PERCGEGKGCVGGAKSATIVADLSETTIQT DLSETTIQTPDGEERLGGEAHSMVWDPSGE K S A E R L 2 1 0 2 0 1 3 1 0 2 1 0 0 0 1 2 4 0 0 1 0 0 21 0 2232.0758 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 374 394 AAAS Aladin yes no 2 1.5464E-22 114.56 By MS/MS By matching 1 1 0.91747 0.87945 21.478 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72437 0.75554 NaN 1 0 Median 1.162 1.0237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3627300 1809500 1817700 0 0 0 0 0 0 3451000 1723000 1728000 176230 86542 89691 0 0 0 0 0 0 29461 4082 30979 154096;154097 154961;154962 154962 2 SATLASIDAELQK KTKEYELLSDELNQKSATLASIDAELQKLK QKSATLASIDAELQKLKEMTNHQKKRAAEM K S A Q K L 3 0 0 1 0 1 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 13 0 1345.7089 P33176 P33176 527 539 KIF5B Kinesin-1 heavy chain yes yes 2 2.2666E-06 119.53 By MS/MS By matching By matching By matching 1 1 1 1 1.1514 1.0033 25.739 4 Median 1.0333 0.99448 NaN 1 0 Median 1.0931 0.92612 NaN 1 0 Median 1.2865 1.6252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2128 1.0123 NaN 1 0 Median 43191000 20334000 22858000 26247000 12273000 13974000 9051500 4164200 4887300 7289700 3609500 3680300 0 0 0 0 0 0 602920 287410 315510 29462 2221 30980 154098;154099;154100;154101 154963;154964 154964 2 SATLLQLITK YQSLLNSYGEPVDDKSATLLQLITKFATEY PVDDKSATLLQLITKFATEYCNTIEGTAKY K S A T K F 1 0 0 0 0 1 0 0 0 1 3 1 0 0 0 1 2 0 0 0 0 0 10 0 1086.6649 O00429 O00429 330 339 DNM1L Dynamin-1-like protein yes yes 2 0.041327 30.687 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1599 1.1469 69.757 4 Median 0.94203 0.92649 NaN 1 0 Median 1.0131 0.88535 NaN 1 0 Median 1.3279 1.4197 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.8631 3.9728 NaN 1 0 Median NaN NaN NaN 0 0 Median 13247000 6742300 6504500 2142700 1130300 1012400 9458600 5004300 4454300 1197800 509520 688300 0 0 0 447620 98140 349480 0 0 0 29463 1463 30981 154102;154103;154104;154105 154965;154966;154967 154965 3 SATREPPYRVPR RTEEGPTLSYGRDGRSATREPPYRVPRDDW DGRSATREPPYRVPRDDWEEKRHFRRDSFD R S A P R D 1 3 0 0 0 0 1 0 0 0 0 0 0 0 3 1 1 0 1 1 0 0 12 2 1427.7633 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 164 175 MATR3 Matrin-3 yes no 3 0.00058639 50.354 By matching By MS/MS By matching 2 3 1 0.64843 0.7633 33.748 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78318 0.89599 69.003 2 0 Median NaN NaN NaN 0 0 Median 0.64313 0.75581 11.959 3 0 Median 0.79567 0.81739 NaN 1 0 Median 18901000 11080000 7821100 0 0 0 0 0 0 1457400 743860 713520 0 0 0 16131000 9637400 6493800 1312000 698240 613730 29464 297 30982 154106;154107;154108;154109;154110;154111 154968;154969 154968 2 SATYVNTEGR PIADVILPGAAYTEKSATYVNTEGRAQQTK AYTEKSATYVNTEGRAQQTKVAVTPPGLAR K S A G R A 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 0 10 0 1096.5149 P28331;B4DJ81 P28331 593 602 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.071385 25.559 By MS/MS By matching 1 2 3.2447 3.1176 58.402 3 Plateau 1.1529 1.1487 NaN 1 0 Median 1.9367 1.8876 71.953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3406200 1156400 2249700 801530 354770 446770 2604600 801670 1803000 0 0 0 0 0 0 0 0 0 0 0 0 29465 2165 30983 154112;154113;154114 154970 154970 1 SAVADKHELLSLASSNHLGK NSHLINVLMWELEKKSAVADKHELLSLASS KHELLSLASSNHLGKNLQLLMDRVDEMSQD K S A G K N 3 0 1 1 0 0 1 1 2 0 4 2 0 0 0 4 0 0 0 1 0 0 20 1 2076.0964 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 236 255 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 3;4 3.112E-09 82.586 By MS/MS By MS/MS 2 1 0.85691 0.93379 10.713 3 Median 0.86234 0.86529 13.815 2 0 Median NaN NaN NaN 0 0 Median 0.85691 0.93379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61906000 29797000 32109000 50594000 23758000 26835000 0 0 0 11312000 6038800 5273100 0 0 0 0 0 0 0 0 0 29466 584 30984 154115;154116;154117 154971;154972;154973;154974;154975;154976;154977 154974 7 SAVEAQNEVTENPK SEIKEEEQVKSTDRKSAVEAQNEVTENPKQ KSAVEAQNEVTENPKQKIAAESSENVDCPE K S A P K Q 2 0 2 0 0 1 3 0 0 0 0 1 0 0 1 1 1 0 0 2 0 0 14 0 1514.7213 Q32MZ4 Q32MZ4 618 631 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 yes yes 2 2.5101E-05 143.79 By MS/MS By MS/MS 1 1 0.75721 0.69846 2.1801 2 Median 0.70785 0.70931 NaN 1 0 Median 0.81 0.68777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8061900 4313300 3748600 1780300 1039600 740760 6281600 3273800 3007800 0 0 0 0 0 0 0 0 0 0 0 0 29467 3006 30985 154118;154119 154978;154979;154980;154981 154981 4 SAVEDEGLK VSAKNALESYAFNMKSAVEDEGLKGKISEA YAFNMKSAVEDEGLKGKISEADKKKVLDKC K S A L K G 1 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 946.46074 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 552 560 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.00072961 101.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 3 1.3005 1.1561 13.351 10 Median 1.4438 1.3478 NaN 1 0 Median 1.264 1.0838 8.723 2 0 Median 1.3058 1.2661 NaN 1 0 Median 1.2405 1.0526 NaN 1 0 Median 1.3021 1.2939 15.98 2 1 Median 1.3923 1.1566 14.179 3 0 Median 302570000 129360000 173210000 22329000 8622200 13707000 149100000 64738000 84362000 115220000 49005000 66216000 7628700 3283600 4345000 5114900 2308300 2806700 3174900 1403600 1771200 29468 278 30986 154120;154121;154122;154123;154124;154125;154126;154127;154128;154129 154982;154983;154984;154985;154986;154987;154988;154989;154990;154991;154992;154993;154994;154995;154996;154997 154991 16 SAVEDEGLKGK VSAKNALESYAFNMKSAVEDEGLKGKISEA FNMKSAVEDEGLKGKISEADKKKVLDKCQE K S A G K I 1 0 0 1 0 0 2 2 0 0 1 2 0 0 0 1 0 0 0 1 0 0 11 1 1131.5772 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 552 562 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.00092477 75.378 By matching By MS/MS By matching 1 1 1 1.4842 1.4464 28.268 3 Median 1.5063 1.4464 NaN 1 0 Median 1.0559 0.99098 NaN 1 0 Median 1.4842 1.7229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3082900 1557500 1525400 611590 206440 405150 1707600 1010800 696800 763690 340270 423420 0 0 0 0 0 0 0 0 0 29469 278 30987 154130;154131;154132 154998 154998 1 SAVENCQDSWR RNPELQNLLLDDFFKSAVENCQDSWRRAVS DFFKSAVENCQDSWRRAVSTGVQAGIPMPC K S A W R R 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 11 0 1350.5623 P52209 P52209 397 407 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 2 0.00014769 116.3 By MS/MS 1 1.3863 1.1724 NaN 1 Median NaN NaN NaN 0 0 Median 1.3863 1.1724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6018200 2720700 3297500 0 0 0 6018200 2720700 3297500 0 0 0 0 0 0 0 0 0 0 0 0 29470 2447 30988 154133 154999 154999 1 SAVGAATPYLHHPGDSHSGR ______________________________ ATPYLHHPGDSHSGRVSFLGAQLPPEVAAM M S A G R V 3 1 0 1 0 0 0 3 3 0 1 0 0 0 2 3 1 0 1 1 0 0 20 0 2015.9562 Q9GZQ3;E9PJE4 Q9GZQ3 2 21 COMMD5 COMM domain-containing protein 5 yes no 4 2.1325E-07 55.007 By MS/MS By matching 1 1 0.85219 0.8104 2.9841 2 Median 0.83608 0.79348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86861 0.82769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18145000 9776200 8369100 14711000 8046200 6664600 0 0 0 3434500 1730000 1704500 0 0 0 0 0 0 0 0 0 29471 3911 30989 154134;154135 155000;155001 155001 2 SAVGFDYQGK GFGGKYGVQADRVDKSAVGFDYQGKTEKHE DRVDKSAVGFDYQGKTEKHESQRDYSKGFG K S A G K T 1 0 0 1 0 1 0 2 0 0 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1070.5033 Q14247 Q14247 172 181 CTTN Src substrate cortactin yes yes 2 0.0043572 60.59 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1162 1.1055 90.457 6 Median 0.77893 0.72051 63.497 2 1 Median 1.3435 1.1468 39.668 2 1 Median NaN NaN NaN 0 0 Median 8.1571 6.8659 NaN 1 0 Median 1.0318 1.0826 NaN 1 0 Median NaN NaN NaN 0 0 Median 20256000 8685400 11571000 8543700 4892200 3651500 5420500 2336900 3083600 0 0 0 3916100 440830 3475200 2375600 1015400 1360200 0 0 0 29472 2868 30990 154136;154137;154138;154139;154140;154141 155002;155003;155004;155005 155002 4 SAVGFEYQGK GFGGKFGVQMDRVDQSAVGFEYQGKTEKHA DRVDQSAVGFEYQGKTEKHASQKDYSSGFG Q S A G K T 1 0 0 0 0 1 1 2 0 0 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1084.5189 Q14247 Q14247 135 144 CTTN Src substrate cortactin yes yes 2 0.0011397 87.308 By MS/MS By MS/MS 6 5 1.1419 0.97469 13.645 10 Median 1.1666 1.1184 17.119 5 2 Linear 1.1458 0.98573 9.3002 5 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41885000 18925000 22960000 17035000 7542000 9492700 24850000 11383000 13467000 0 0 0 0 0 0 0 0 0 0 0 0 29473 2868 30991 154142;154143;154144;154145;154146;154147;154148;154149;154150;154151;154152 155006;155007;155008;155009;155010;155011;155012;155013;155014;155015 155014 10 SAVGHVFSLEK TLHNLYLITFNPVGRSAVGHVFSLEKNLQS PVGRSAVGHVFSLEKNLQSLITLMEYYSKE R S A E K N 1 0 0 0 0 0 1 1 1 0 1 1 0 1 0 2 0 0 0 2 0 0 11 0 1172.619 Q69YN4;H0YBN5 Q69YN4 810 820 KIAA1429 Protein virilizer homolog yes no 2 3.2734E-06 157.75 By MS/MS By matching 1 1 1.018 1.0162 6.2709 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88345 0.97215 NaN 1 0 Median 1.173 1.0623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29280000 14653000 14627000 0 0 0 0 0 0 27347000 13749000 13598000 1932600 903840 1028800 0 0 0 0 0 0 29474 3130 30992 154153;154154 155016;155017 155017 2 SAVLQEAR EESGGGSNPFQHLEKSAVLQEARVFNETPI PFQHLEKSAVLQEARVFNETPINPRKCAHI K S A A R V 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 872.47158 Q9Y678;Q9UBF2 Q9Y678 25 32 COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma-2 no no 2 0.0035841 87.323 By MS/MS By MS/MS 3 1 0.99206 0.98707 12.006 4 Median 0.94958 0.94314 13.032 3 1 Median 1.1948 1.033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9098100 4458300 4639800 2822600 1559700 1262900 6275500 2898600 3376900 0 0 0 0 0 0 0 0 0 0 0 0 29475 4481;4238 30993 154155;154156;154157;154158 155018;155019;155020 155020 3 SAVPFLPVNPEYSATR VWLATQNHSTLVTERSAVPFLPVNPEYSAT AVPFLPVNPEYSATRNQGRQKLARFNAREF R S A T R N 2 1 1 0 0 0 1 0 0 0 1 0 0 1 3 2 1 0 1 2 0 0 16 0 1746.8941 J3QLH1;J3QRU8;A0A0C4DGN6;Q9Y2X7 J3QLH1 71 86 GIT1 ARF GTPase-activating protein GIT1 yes no 2 0.00087939 41.052 By MS/MS 1 0.51042 0.5017 NaN 1 Median 0.51042 0.5017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2413100 1441800 971320 2413100 1441800 971320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29476 250 30994 154159 155021;155022 155021 2 SAVPPGADKKAEAGAGSATEFQFR ARLTRGEADRDTYRRSAVPPGADKKAEAGA KAEAGAGSATEFQFRGGFGRGRGQPPQ___ R S A F R G 6 1 0 1 0 1 2 3 0 0 0 2 0 2 2 2 1 0 0 1 0 0 24 2 2391.1819 P46783 P46783 130 153 RPS10 40S ribosomal protein S10 yes yes 3;4 1.4291E-12 60.991 By MS/MS By matching By matching 2 1 1 1.0902 1.1074 48.81 4 Median 1.2385 1.3018 65.928 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91192 0.75219 NaN 1 0 Median 1.3034 1.5015 NaN 1 0 Median NaN NaN NaN 0 0 Median 59545000 25685000 33859000 52202000 20787000 31415000 0 0 0 0 0 0 942120 448020 494100 6400700 4450200 1950600 0 0 0 29477 2346 30995 154160;154161;154162;154163 155023;155024;155025 155025 3 SAVQKPPSTGSAPAIESVD RALGAHLEAEPKSQRSAVQKPPSTGSAPAI KPPSTGSAPAIESVD_______________ R S A V D - 3 0 0 1 0 1 1 1 0 1 0 1 0 0 3 4 1 0 0 2 0 0 19 1 1839.9214 Q9NUQ3 Q9NUQ3 510 528 TXLNG Gamma-taxilin yes yes 2 0.025207 26.711 By MS/MS 1 0.6032 0.51314 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6032 0.51314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4065800 2427700 1638100 0 0 0 0 0 0 0 0 0 4065800 2427700 1638100 0 0 0 0 0 0 29478 4118 30996 154164 155026 155026 1 SAVRPASLNLNR PGGLGGSVHYATMARSAVRPASLNLNRSRS MARSAVRPASLNLNRSRSLSNSNPDISGTP R S A N R S 2 2 2 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 1 0 0 12 1 1296.7262 Q96N67;A0A0U1RRC1;A0A0U1RQJ5 Q96N67 882 893 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.065585 35.541 By MS/MS By matching 1 1 1.076 1.1182 36.539 2 Median 0.80752 0.86356 NaN 1 0 Median 1.4337 1.4478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4657600 2209800 2447800 3290000 1706700 1583300 1367600 503100 864540 0 0 0 0 0 0 0 0 0 0 0 0 29479 3707 30997 154165;154166 155027 155027 1 SAVTTVVNPK KMNAKWDTGENPIYKSAVTTVVNPKYEGK_ NPIYKSAVTTVVNPKYEGK___________ K S A P K Y 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 2 0 0 3 0 0 10 0 1014.571 P05556 P05556 785 794 ITGB1 Integrin beta-1 yes yes 2 0.0029636 70.919 By MS/MS By MS/MS 2 1 1.1457 1.0182 22.692 3 Median 0.95439 0.91955 30.994 2 1 Median 1.2218 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6371800 3042100 3329700 3859900 1981800 1878100 2511900 1060300 1451600 0 0 0 0 0 0 0 0 0 0 0 0 29480 1868 30998 154167;154168;154169 155028;155029;155030 155028 3 SAVVAAGGGSSGQVTSNGSIGR ______________________________ GGSSGQVTSNGSIGRDPPAETQPQNPPAQP R S A G R D 3 1 1 0 0 1 0 6 0 1 0 0 0 0 0 5 1 0 0 3 0 0 22 0 1917.9504 O96005;K7EQQ1 O96005 12 33 CLPTM1 Cleft lip and palate transmembrane protein 1 yes no 2;3 1.3884E-80 238.17 By MS/MS By MS/MS 2 3 1.4242 1.3531 21.587 5 Median 1.4282 1.4294 0.28732 2 0 Median 1.2414 1.0349 21.191 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30458000 12819000 17638000 7498000 3221500 4276600 22959000 9598000 13361000 0 0 0 0 0 0 0 0 0 0 0 0 29481 1805 30999 154170;154171;154172;154173;154174 155031;155032;155033;155034;155035;155036;155037 155036 7 SAVVEMLIMR DHGFSPLHWACREGRSAVVEMLIMRGARIN CREGRSAVVEMLIMRGARINVMNRGDDTPL R S A M R G 1 1 0 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 0 2 0 0 10 0 1147.6093 Q13418;A0A0A0MTH3;A0A087WWY6 Q13418 47 56 ILK Integrin-linked protein kinase yes no 2 0.00039551 90.657 By matching By MS/MS By matching By MS/MS 1 1 1 1 1.0996 1.0231 29.316 4 Median 0.80165 0.78162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.03 1.0172 NaN 1 0 Median 1.1739 1.0291 NaN 1 0 Median 1.5792 1.5865 NaN 1 0 Median NaN NaN NaN 0 0 Median 12038000 5776500 6261300 488630 296620 192010 0 0 0 10580000 5082000 5498500 260490 117080 143410 708290 280860 427430 0 0 0 29482 190 31000 154175;154176;154177;154178 155038;155039;155040 155039 3 SAWQTLNEFAR RMGSDLKQGFISSLKSAWQTLNEFARAHTS SSLKSAWQTLNEFARAHTSSTQLQEELEKV K S A A R A 2 1 1 0 0 1 1 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 11 0 1321.6415 Q9Y6Y8 Q9Y6Y8 880 890 SEC23IP SEC23-interacting protein yes yes 2 0.00015337 92.838 By MS/MS By matching 3 1 1.1058 1.0432 30.708 4 Median 1.1894 1.1499 36.643 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0282 0.94635 NaN 1 0 Median 7151500 2905800 4245700 7074500 2873400 4201100 0 0 0 0 0 0 0 0 0 0 0 0 77004 32328 44676 29483 4502 31001 154179;154180;154181;154182 155041;155042 155042 2 SAWYMGPVSR ______________________________ DSSDRSAWYMGPVSRQEAQTRLQGQRHGMF R S A S R Q 1 1 0 0 0 0 0 1 0 0 0 0 1 0 1 2 0 1 1 1 0 0 10 0 1152.5386 P46109 P46109 12 21 CRKL Crk-like protein yes yes 2 0.00036244 112.84 By MS/MS By MS/MS 3 1 0.93499 0.90104 38.601 4 Median 0.86423 0.80907 41.41 3 0 Median 1.2321 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24977000 12877000 12100000 23054000 12007000 11047000 1923500 870020 1053400 0 0 0 0 0 0 0 0 0 0 0 0 29484 2341 31002 154183;154184;154185;154186 155043;155044;155045 155043 3 SAYDSTMETMNYAQIR KHPEVDVLINFASLRSAYDSTMETMNYAQI AYDSTMETMNYAQIRTIAIIAEGIPEALTR R S A I R T 2 1 1 1 0 1 1 0 0 1 0 0 2 0 0 2 2 0 2 0 0 0 16 0 1879.808 P53396 P53396 577 592 ACLY ATP-citrate synthase yes yes 2 3.763E-09 143.97 By MS/MS By MS/MS By matching 4 2 1 1.2133 1.0464 15.652 7 Median 1.2377 1.1933 21.169 4 0 Median 1.1825 1.0225 3.2742 2 0 Median 0.97956 1.044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51821000 23121000 28700000 45363000 20110000 25254000 5463300 2413200 3050100 994270 598260 396010 0 0 0 0 0 0 0 0 0 29485 2467 31003;31004 154187;154188;154189;154190;154191;154192;154193 155046;155047;155048;155049 155048 1157 4 SAYEFSETESMLK GPRTLVWSEKEQVEKSAYEFSETESMLKIA EKSAYEFSETESMLKIAEDLGGPYVWGQYD K S A L K I 1 0 0 0 0 0 3 0 0 0 1 1 1 1 0 3 1 0 1 0 0 0 13 0 1520.6705 P09960 P09960 231 243 LTA4H Leukotriene A-4 hydrolase yes yes 2 4.4454E-07 120.06 By MS/MS By matching By matching 2 1 1 1.1441 1.0107 6.5406 4 Median 1.0492 1.0059 2.3238 2 0 Median 1.1935 0.99905 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3227 1.1405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39637000 18068000 21568000 26555000 12236000 14319000 12873000 5746300 7126300 0 0 0 208950 85499 123450 0 0 0 0 0 0 29486 1924 31005 154194;154195;154196;154197 155050;155051 155051 2 SAYESQPIR PELQVAFADCAADIKSAYESQPIRQTAQDW CAADIKSAYESQPIRQTAQDWPATSLNCIA K S A I R Q 1 1 0 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 1 0 0 0 9 0 1049.5142 Q96EY7 Q96EY7 557 565 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.0022552 73.26 By matching By MS/MS By matching By matching 1 1 1 2 1.112 1.085 41.036 5 Median 0.65905 0.65867 NaN 1 0 Median 1.2508 1.085 NaN 1 0 Median 1.112 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0161 0.84835 67.714 2 0 Median 5261300 2581700 2679500 560860 301760 259090 2894100 1290800 1603300 719670 340460 379200 0 0 0 0 0 0 1086600 648690 437910 29487 3644 31006 154198;154199;154200;154201;154202 155052 155052 1 SAYGGLQTSSYLMSTR SITSGYSQSSQVFGRSAYGGLQTSSYLMST AYGGLQTSSYLMSTRSFPSYYTSHVQEEQI R S A T R S 1 1 0 0 0 1 0 2 0 0 2 0 1 0 0 4 2 0 2 0 0 0 16 0 1720.809 P07196 P07196 422 437 NEFL Neurofilament light polypeptide yes yes 2 0.00013202 52.344 By matching By MS/MS By matching 1 1 1 1.101 1.0549 6.5146 3 Plateau 1.1361 1.1044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0017 1.0077 NaN 1 0 Median 1.101 0.97359 NaN 1 0 Median 7260900 3425600 3835400 5072400 2368000 2704400 0 0 0 0 0 0 0 0 0 2034400 986910 1047500 154160 70675 83481 29488 1881 31007 154203;154204;154205 155053 155053 1 SAYNVYVAER KKKELTLLGKPKRPRSAYNVYVAERFQEAK PKRPRSAYNVYVAERFQEAKGDSPQEKLKT R S A E R F 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 0 0 10 0 1170.5669 Q00059;H7BYN3 Q00059 160 169 TFAM Transcription factor A, mitochondrial yes no 2 1.9943E-05 147.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 4 1.026 0.99593 19.762 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66626 0.63913 NaN 1 0 Median 1.2926 1.0489 7.3267 2 0 Median 0.82101 0.84049 25.507 2 1 Median 1.1436 1.1163 15.61 4 0 Linear 612700000 299060000 313630000 0 0 0 0 0 0 209120000 108270000 100850000 47035000 20330000 26705000 268260000 133090000 135170000 88281000 37375000 50906000 29489 2673 31008 154206;154207;154208;154209;154210;154211;154212;154213;154214;154215;154216 155054;155055;155056;155057;155058;155059;155060;155061;155062;155063;155064;155065;155066;155067;155068;155069;155070;155071;155072;155073;155074 155070 21 SAYPPPAPAYALSSPR HGFPNHQYNSYYPNRSAYPPPAPAYALSSP AYPPPAPAYALSSPRGGTPGSGAAAAAGSK R S A P R G 4 1 0 0 0 0 0 0 0 0 1 0 0 0 5 3 0 0 2 0 0 0 16 0 1643.8308 O14497 O14497 220 235 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 0.00013164 51.875 By MS/MS 2 0.48427 0.53266 29.563 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48427 0.53266 29.563 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11768000 7578900 4189600 0 0 0 0 0 0 11768000 7578900 4189600 0 0 0 0 0 0 0 0 0 29490 1480 31009 154217;154218 155075;155076 155076 2 SAYQEAMDISKK VATGDDKKRIIDSARSAYQEAMDISKKEMP SARSAYQEAMDISKKEMPPTNPIRLGLALN R S A K K E 2 0 0 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 1 0 0 0 12 1 1369.6548 P31947 P31947 149 160 SFN 14-3-3 protein sigma yes yes 2;3 0.00046657 80.102 By MS/MS By MS/MS 4 1 0.93967 0.95433 33.055 5 Median 0.8756 0.88936 28.444 4 0 Median 1.4533 1.3273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54820000 26596000 28224000 47186000 23576000 23610000 7634000 3019600 4614400 0 0 0 0 0 0 0 0 0 0 0 0 29491 2211 31010 154219;154220;154221;154222;154223 155077;155078;155079;155080 155078 4 SAYQTIDSAEAPADPFAVPEGR ELLVHTGFLGSSQDRSAYQTIDSAEAPADP SAEAPADPFAVPEGRSQDARGY________ R S A G R S 5 1 0 2 0 1 2 1 0 1 0 0 0 1 3 2 1 0 1 1 0 0 22 0 2291.0706 Q6RW13 Q6RW13 131 152 AGTRAP Type-1 angiotensin II receptor-associated protein yes yes 2;3 1.9016E-12 81.448 By MS/MS By matching 3 1 0.77191 0.74268 3.6612 4 Median 0.76889 0.7364 3.0579 3 1 Median 0.90587 0.77037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42123000 24861000 17262000 40914000 24187000 16727000 1209100 673500 535640 0 0 0 0 0 0 0 0 0 0 0 0 29492 3180 31011 154224;154225;154226;154227 155081;155082;155083;155084 155082 4 SAYSSYSAPVSSSLSVR RVHISSVRSGYSTARSAYSSYSAPVSSSLS YSSYSAPVSSSLSVRRSYSSSSGSLMPSLE R S A V R R 2 1 0 0 0 0 0 0 0 0 1 0 0 0 1 8 0 0 2 2 0 0 17 0 1746.8424 P07196;A0A0S2Z436;A0A087X0W2 P07196 38 54 NEFL Neurofilament light polypeptide yes no 2 2.0884E-05 62.924 By matching By MS/MS 1 1 0.95245 0.93828 18.786 2 Median 0.84965 0.82156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0677 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median 9856400 4957900 4898500 5913400 2835900 3077500 0 0 0 0 0 0 0 0 0 3943000 2122000 1821000 0 0 0 29493 1881 31012 154228;154229 155085;155086 155086 2 SCAEWVSLSK KYTAQVDAEEKEDVKSCAEWVSLSKARIVE KEDVKSCAEWVSLSKARIVEYEKEMEKMKN K S C S K A 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 3 0 1 0 1 0 0 10 0 1165.5438 O75947 O75947 100 109 ATP5H ATP synthase subunit d, mitochondrial yes yes 2 0.0042842 53.751 By MS/MS 1 1.4726 1.2633 NaN 1 Median NaN NaN NaN 0 0 Median 1.4726 1.2633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5552800 2597200 2955600 0 0 0 5552800 2597200 2955600 0 0 0 0 0 0 0 0 0 0 0 0 29494 1711 31013 154230 155087;155088 155088 2 SCAHDWVYE EISLWFKPEELVDYKSCAHDWVYE______ ELVDYKSCAHDWVYE_______________ K S C Y E - 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 9 0 1165.4499 Q32Q12;P22392;O60361 Q32Q12 284 292 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.0054031 71.715 By MS/MS By MS/MS By MS/MS 1 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44546000 0 0 11391000 0 0 30403000 0 0 2751700 0 0 0 0 0 0 0 0 0 0 0 29495 3008 31014 154231;154232;154233;154234 155089;155090;155091;155092;155093 155093 5 SCGLHVTSIK IGKGIIASSVGTILKSCGLHVTSIKIDPYI GTILKSCGLHVTSIKIDPYINIDAGTFSPY K S C I K I 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 2 1 0 0 1 0 0 10 0 1100.5648 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ITH9 P17812 29 38 CTPS1 CTP synthase 1 yes no 2 0.002519 74.165 By MS/MS 1 1.4754 1.2653 NaN 1 Median NaN NaN NaN 0 0 Median 1.4754 1.2653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3537700 1543000 1994800 0 0 0 3537700 1543000 1994800 0 0 0 0 0 0 0 0 0 0 0 0 29496 2046 31015 154235 155094 155094 1 SCGSSSHENRPLDLLHK PKLTTSEEKGKKSSKSCGSSSHENRPLDLL GSSSHENRPLDLLHKMESKSSNQLSWLSVS K S C H K M 0 1 1 1 1 0 1 1 2 0 3 1 0 0 1 4 0 0 0 0 0 0 17 1 1935.9221 Q7Z6Z7;H0Y659 Q7Z6Z7 3258 3274 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 4 0.023514 17.151 By MS/MS 1 1.0269 0.95414 NaN 1 Median NaN NaN NaN 0 0 Median 1.0269 0.95414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7437400 3423900 4013500 0 0 0 7437400 3423900 4013500 0 0 0 0 0 0 0 0 0 0 0 0 29497 3253 31016 154236 155095 155095 1 SCLLHQFTEK YIFKYIIIGDMGVGKSCLLHQFTEKKFMAD MGVGKSCLLHQFTEKKFMADCPHTIGVEFG K S C E K K 0 0 0 0 1 1 1 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1261.6125 P61106;X6RFL8 P61106 25 34 RAB14 Ras-related protein Rab-14 yes no 2;3 0.017861 35.541 By matching By MS/MS 1 3 1.3958 1.2906 28.667 4 Median 1.1172 1.0599 NaN 1 0 Median 1.6701 1.5716 30.632 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8039200 3080500 4958700 2407000 697300 1709700 5632200 2383200 3249000 0 0 0 0 0 0 0 0 0 0 0 0 29498 2545 31017 154237;154238;154239;154240 155096;155097 155096 2 SCMLTGTPESVQSAK CKIQIAPDSGGLPERSCMLTGTPESVQSAK SCMLTGTPESVQSAKRLLDQIVEKGRPAPG R S C A K R 1 0 0 0 1 1 1 1 0 0 1 1 1 0 1 3 2 0 0 1 0 0 15 0 1594.7331 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 147 161 FUBP1 Far upstream element-binding protein 1 no no 2 3.6472E-09 88.187 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29499 3599;723 31018 154241 155098 155098 1 SCNCLLLK TVTNPKRIAKAVNEKSCNCLLLKVNQIGSV AKAVNEKSCNCLLLKVNQIGSVTESLQACK K S C L K V 0 0 1 0 2 0 0 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 1006.494 P06733;A0A2R8Y6G6 P06733 336 343 ENO1 Alpha-enolase yes no 2 0.0079765 64.803 By MS/MS 2 1.2984 1.0885 4.6505 2 Median NaN NaN NaN 0 0 Median 1.2984 1.0885 4.6505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22794000 9503600 13290000 0 0 0 22794000 9503600 13290000 0 0 0 0 0 0 0 0 0 0 0 0 29500 1873 31019 154242;154243 155099 155099 1 SCSGVEFSTSGHAYTDTGK KGYGFGMVKIDLKTKSCSGVEFSTSGHAYT VEFSTSGHAYTDTGKASGNLETKYKVCNYG K S C G K A 1 0 0 1 1 0 1 3 1 0 0 1 0 1 0 4 3 0 1 1 0 0 19 0 1989.8374 Q9Y277;E5RJN6;E5RHZ6;E5RHE1 Q9Y277 35 53 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 3 0.00072415 29.126 By MS/MS 1 1.6073 1.3472 NaN 1 Median NaN NaN NaN 0 0 Median 1.6073 1.3472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4300200 1821000 2479200 0 0 0 4300200 1821000 2479200 0 0 0 0 0 0 0 0 0 0 0 0 29501 4377 31020 154244 155100 155100 1 SCSGVEFSTSGSSNTDTGK KGFGFGLVKLDVKTKSCSGVEFSTSGSSNT VEFSTSGSSNTDTGKVTGTLETKYKWCEYG K S C G K V 0 0 1 1 1 0 1 3 0 0 0 1 0 1 0 6 3 0 0 1 0 0 19 0 1906.7851 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 46 64 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 9.5946E-48 214.23 By MS/MS By MS/MS By MS/MS 1 1 1 1.2977 1.0898 10.83 3 Median 1.1171 1.0707 NaN 1 0 Median 1.5494 1.3023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2977 1.0898 NaN 1 0 Median 16331000 6952800 9378000 4775900 2231700 2544200 10647000 4338600 6308600 0 0 0 0 0 0 0 0 0 907640 382480 525160 29502 151 31021 154245;154246;154247 155101;155102;155103;155104;155105 155102 5 SCTAQQPATTLPEDR RAVCCDVVYKLPFGRSCTAQQPATTLPEDR SCTAQQPATTLPEDRFGYRDDHYQYDRSGP R S C D R F 2 1 0 1 1 2 1 0 0 0 1 0 0 0 2 1 3 0 0 0 0 0 15 0 1673.7679 Q9Y6V0 Q9Y6V0 2952 2966 PCLO Protein piccolo yes yes 3 0.059982 10.339 By matching By matching By MS/MS By matching 1 1 1 1 0.97967 0.88122 6.9505 4 Median 0.9106 0.85916 NaN 1 0 Median 0.97366 0.82431 NaN 1 0 Median 0.98573 0.96863 NaN 1 0 Median 1.0556 0.90385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49721000 25031000 24690000 24329000 12327000 12002000 1324100 669230 654900 15576000 7679700 7896600 8491500 4354800 4136700 0 0 0 0 0 0 29503 4496 31022 154248;154249;154250;154251 155106 155106 1 SDAAVDTSSEITTK ______________________________ MSDAAVDTSSEITTKDLKEKKEVVEEAENG M S D T K D 2 0 0 2 0 0 1 0 0 1 0 1 0 0 0 3 3 0 0 1 0 0 14 0 1423.6678 B8ZZQ6;P06454 B8ZZQ6 2 15 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 2 1.0156E-23 201.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1.0782 1.0035 10.697 10 Median 1.0898 1.0126 10.096 3 0 Plateau 1.2274 1.0064 16.04 3 0 Median 1.0457 1.025 3.4048 2 0 Median 1.1653 0.94277 NaN 1 0 Median 0.96579 1.0392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1057100000 493390000 563690000 901780000 424710000 477070000 91649000 38813000 52836000 56313000 26490000 29823000 3325000 1498300 1826700 4005400 1872000 2133400 0 0 0 29504 650 31023 154252;154253;154254;154255;154256;154257;154258;154259;154260;154261 155107;155108;155109;155110;155111;155112;155113;155114;155115;155116;155117;155118;155119;155120;155121;155122;155123;155124;155125;155126 155122 20 SDAAVDTSSEITTKDLK ______________________________ AAVDTSSEITTKDLKEKKEVVEEAENGRDA M S D L K E 2 0 0 3 0 0 1 0 0 1 1 2 0 0 0 3 3 0 0 1 0 0 17 1 1779.8738 B8ZZQ6;P06454 B8ZZQ6 2 18 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 2 3.8658E-08 96.745 By MS/MS By matching 1 1 1.265 1.193 30.052 2 Median 0.9626 0.96462 NaN 1 0 Median 1.6625 1.4755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4545000 2255300 2289800 4275100 2163700 2111400 269900 91567 178330 0 0 0 0 0 0 0 0 0 0 0 0 29505 650 31024 154262;154263 155127 155127 1 SDAAVDTSSEITTKDLKEK ______________________________ VDTSSEITTKDLKEKKEVVEEAENGRDAPA M S D E K K 2 0 0 3 0 0 2 0 0 1 1 3 0 0 0 3 3 0 0 1 0 0 19 2 2037.0114 B8ZZQ6;P06454 B8ZZQ6 2 20 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes no 3 8.6858E-11 77.514 By MS/MS 1 0.91819 0.99435 NaN 1 Median 0.91819 0.99435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6236500 3005700 3230800 6236500 3005700 3230800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29506 650 31025 154264 155128 155128 1 SDADENVSASDK RSTYRGQDIEYIEIRSDADENVSASDKRRN EIRSDADENVSASDKRRNYNYRVVMLKGDT R S D D K R 2 0 1 3 0 0 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 12 0 1236.5106 Q92878;A0A1W2PQ90;A0A494BZX8;H7C0V2 Q92878 1167 1178 RAD50 DNA repair protein RAD50 yes no 2 0.0038247 45.137 By MS/MS By matching By matching 1 2 1 1.0709 1.0521 3.2743 4 Median NaN NaN NaN 0 0 Median 1.2704 1.0888 NaN 1 0 Median 0.95948 1.0234 1.1987 2 0 Median 1.1916 1.0725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2257100 983680 1273400 0 0 0 972990 401690 571300 938440 436760 501670 345680 145220 200460 0 0 0 0 0 0 29507 3561 31026 154265;154266;154267;154268 155129;155130;155131 155130 3 SDAEDGEGTVASWELR RKLRIFISNTFNPAKSDAEDGEGTVASWEL DAEDGEGTVASWELRVEGRLLEDSALSKYD K S D L R V 2 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 1 0 1 0 0 16 0 1720.754 Q96GM5 Q96GM5 195 210 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes yes 2 2.2524E-20 140.31 By MS/MS 1 0.85178 0.86079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85178 0.86079 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8708600 4306200 4402400 0 0 0 0 0 0 8708600 4306200 4402400 0 0 0 0 0 0 0 0 0 29508 3659 31027 154269 155132 155132 1 SDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK R S D M K K 2 0 0 2 0 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 12 0 1223.534 Q9NR30 Q9NR30 7 18 DDX21 Nucleolar RNA helicase 2 yes yes 2 5.1455E-06 100.48 By MS/MS By MS/MS By MS/MS 2 2 1 1.0075 0.88881 25.024 5 Median NaN NaN NaN 0 0 Median 1.0725 0.94587 8.7995 2 2 Median 1.0315 1.1429 41.261 2 0 Median 0.96654 0.83928 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11841000 5885400 5955800 0 0 0 5111000 2636100 2474800 5164700 2434000 2730700 1565600 815300 750300 0 0 0 0 0 0 29509 4076 31028 154270;154271;154272;154273;154274 155133;155134;155135;155136;155137 155134 5 SDAGNLNFEFQVAK IVKEPTSHDNKDICKSDAGNLNFEFQVAKK KSDAGNLNFEFQVAKKEGSWWHCNSCSLKN K S D A K K 2 0 2 1 0 1 1 1 0 0 1 1 0 2 0 1 0 0 0 1 0 0 14 0 1538.7365 P49792 P49792 1337 1350 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0003072 73.781 By matching By MS/MS By matching 1 1 1 1.1328 1.0204 15.093 3 Median NaN NaN NaN 0 0 Median 1.5197 1.3159 NaN 1 0 Median 0.90749 1.0066 NaN 1 0 Median 1.1328 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8767700 4034400 4733400 0 0 0 627030 260180 366850 7766000 3591300 4174700 374750 182910 191830 0 0 0 0 0 0 29510 2401 31029 154275;154276;154277 155138;155139 155139 2 SDALETLGFLNHYQMK KSERSSSGLLEWESKSDALETLGFLNHYQM DALETLGFLNHYQMKNPNGPYPYTLKLCFS K S D M K N 1 0 1 1 0 1 1 1 1 0 3 1 1 1 0 1 1 0 1 0 0 0 16 0 1865.8982 A0A3B3ITJ4;M0QXS5;M0R076;P14866;M0QYT0 P14866 553 568 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2;3 1.5575E-25 192.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 8 8 12 5 1.133 1.0522 15.63 36 Median 2.2046 2.1208 NaN 1 0 Median 1.2542 1.0643 3.3076 2 0 Median 1.0683 1.0715 7.4912 8 1 Median 1.35 1.1563 12.688 8 0 Median 1.0071 1.0161 12.247 12 0 Median 1.2262 1.0151 6.2633 5 0 Median 632570000 303220000 329340000 3146200 988400 2157800 14298000 6239400 8058600 364800000 174360000 190440000 15126000 6459100 8666700 206910000 102230000 104670000 28290000 12945000 15345000 29511 2011;436;1419 31030;31031 154278;154279;154280;154281;154282;154283;154284;154285;154286;154287;154288;154289;154290;154291;154292;154293;154294;154295;154296;154297;154298;154299;154300;154301;154302;154303;154304;154305;154306;154307;154308;154309;154310;154311;154312;154313 155140;155141;155142;155143;155144;155145;155146;155147;155148;155149;155150;155151;155152;155153;155154;155155;155156;155157;155158;155159;155160;155161;155162;155163;155164;155165;155166;155167;155168;155169;155170;155171;155172 155148 192 33 SDASPSSIR PSGEEVLQDIQVMLKSDASPSSIRSLKSDM IQVMLKSDASPSSIRSLKSDMMSHLVKIPG K S D I R S 1 1 0 1 0 0 0 0 0 1 0 0 0 0 1 4 0 0 0 0 0 0 9 0 918.44067 P33992;B1AHA9 P33992 130 138 MCM5 DNA replication licensing factor MCM5 yes no 2 0.014601 44.349 By MS/MS 1 0.80839 0.70735 NaN 1 Median NaN NaN NaN 0 0 Median 0.80839 0.70735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1682600 920320 762260 0 0 0 1682600 920320 762260 0 0 0 0 0 0 0 0 0 0 0 0 29512 2224 31032 154314 155173;155174 155174 2 SDATADDLIDVVEGNR ILAEYKIHNADVTLRSDATADDLIDVVEGN DATADDLIDVVEGNRVYIPCIYVLNKIDQI R S D N R V 2 1 1 4 0 0 1 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 16 0 1688.7853 Q9Y295 Q9Y295 223 238 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 5.8317E-10 105.17 By MS/MS By MS/MS By matching By matching 1 1 1 2 1.1141 1.0556 13.6 5 Median 1.051 1.0556 NaN 1 0 Median 1.0551 0.91517 NaN 1 0 Median 1.155 1.2547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2094 1.0841 15.4 2 0 Median 14690000 6816000 7873500 2348100 1095800 1252300 4181900 2038500 2143400 7452700 3376000 4076800 0 0 0 0 0 0 706750 305800 400950 29513 4382 31033 154315;154316;154317;154318;154319 155175;155176;155177;155178 155177 4 SDATSGILNSTNIQS SSTVGLQRELSKASKSDATSGILNSTNIQS SDATSGILNSTNIQS_______________ K S D Q S - 1 0 2 1 0 1 0 1 0 2 1 0 0 0 0 4 2 0 0 0 0 0 15 0 1506.7162 O43663 O43663 606 620 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.024117 39.937 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936300 0 0 0 0 0 0 0 0 4936300 0 0 0 0 0 0 0 0 0 0 0 29514 1581 31034 154320 155179 155179 1 SDAYYCTGDVTAWTK ALLPCEECSGQLVFKSDAYYCTGDVTAWTK SDAYYCTGDVTAWTKCMVKTQTPNRKEWVT K S D T K C 2 0 0 2 1 0 0 1 0 0 0 1 0 0 0 1 3 1 2 1 0 0 15 0 1736.7352 P09874 P09874 306 320 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00022323 72.958 By MS/MS By matching 2 1 1.0141 1.0758 5.8174 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95655 1.0329 7.5266 2 0 Median NaN NaN NaN 0 0 Median 1.0458 1.0758 NaN 1 0 Median NaN NaN NaN 0 0 Median 11466000 5409900 6055900 0 0 0 0 0 0 9852100 4653200 5198800 0 0 0 1613700 756640 857070 0 0 0 29515 1922 31035 154321;154322;154323 155180 155180 1 SDDDGFEIVPIEDPAK SWEPLRGKKRSRGPKSDDDGFEIVPIEDPA DDDGFEIVPIEDPAKHRILDPEGLALGAVI K S D A K H 1 0 0 4 0 0 2 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 16 0 1745.7996 Q8IY81 Q8IY81 644 659 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.00013249 52.928 By MS/MS By matching 1 1 0.8696 0.82021 20.226 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68747 0.71091 NaN 1 0 Median 1.1 0.94632 NaN 1 0 Median 4309100 2312800 1996300 0 0 0 0 0 0 0 0 0 0 0 0 4147700 2225500 1922200 161430 87324 74103 29516 3338 31036 154324;154325 155181;155182 155181 2 SDDMFTFHGPGK ENMGSSQQKNSGFRRSDDMFTFHGPGKSVF FRRSDDMFTFHGPGKSVFGTPTLETANKNH R S D G K S 0 0 0 2 0 0 0 2 1 0 0 1 1 2 1 1 1 0 0 0 0 0 12 0 1337.571 P49792 P49792 1128 1139 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 0.00034761 81.338 By MS/MS By matching 3 2 0.81533 0.87608 15.58 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84599 0.90521 5.3019 3 0 Plateau 0.99425 0.91601 29.771 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15910000 8823700 7086000 0 0 0 0 0 0 15154000 8454600 6699200 755830 369110 386720 0 0 0 0 0 0 29517 2401 31037 154326;154327;154328;154329;154330 155183;155184;155185;155186 155185 4 SDDNRESLEKR ICIERCLERGKSSGRSDDNRESLEKRIQTY SSGRSDDNRESLEKRIQTYLQSTKPIIDLY R S D K R I 0 2 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 11 2 1347.6379 P30085;A0A494BXC7 P30085 141 151 CMPK1 UMP-CMP kinase yes no 3 0.0026267 41.283 By matching By MS/MS 1 1 1.0069 0.97056 9.743 2 Median 1.0363 1.0398 NaN 1 0 Median 0.97822 0.90595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 870350 422490 447860 359190 165660 193530 511160 256830 254330 0 0 0 0 0 0 0 0 0 0 0 0 29518 2187 31038 154331;154332 155187;155188 155187 2 SDDSVIQLLNPNR VIEGEVATISCQVNKSDDSVIQLLNPNRQT NKSDDSVIQLLNPNRQTIYFRDFRPLKDSR K S D N R Q 0 1 2 2 0 1 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 13 0 1469.7474 A0A087X1W8;A0A0A0MTJ8;X5DQS5;Q9BY67;A0A087X0T8;F5H125;H0YG94 A0A087X1W8 28 40 CADM1 Cell adhesion molecule 1 yes no 2 3.9271E-05 90.629 By MS/MS By matching 1 1 0.95919 0.98004 49.749 2 Median 0.70455 0.6894 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3059 1.3932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4121900 2125000 1996800 2733300 1614700 1118500 0 0 0 1388600 510290 878300 0 0 0 0 0 0 0 0 0 29519 124 31039 154333;154334 155189;155190 155189 2 SDDYLPSIEQQPQQK PDMTQVSGPNAQLVKSDDYLPSIEQQPQQK SDDYLPSIEQQPQQKKKKKKNNHIVAEDPS K S D Q K K 0 0 0 2 0 4 1 0 0 1 1 1 0 0 2 2 0 0 1 0 0 0 15 0 1774.8374 Q9P2D1 Q9P2D1 583 597 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.00026934 69.979 By MS/MS 1 0.49694 0.53518 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49694 0.53518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4641400 3120400 1521000 0 0 0 0 0 0 4641400 3120400 1521000 0 0 0 0 0 0 0 0 0 29520 4220 31040 154335 155191 155191 1 SDEAVKPFGLK LSLMRLDRFRDSILRSDEAVKPFGLKVSQL SILRSDEAVKPFGLKVSQLLLSTDESTFDD R S D L K V 1 0 0 1 0 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1189.6343 P49327;A0A0U1RQF0 P49327 523 533 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 0.00078134 104.01 By MS/MS By MS/MS By matching By matching 5 4 1 2 0.97424 1.0407 13.975 8 Median 0.93608 0.94021 9.4866 3 0 Median 1.1706 1.0998 10.547 2 0 Median 0.97431 1.1084 NaN 1 0 Median 0.96473 0.96684 26.848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137910000 51993000 85921000 59751000 26093000 33659000 56155000 15437000 40719000 17885000 8408700 9476500 4121900 2055200 2066700 0 0 0 0 0 0 29521 2377 31041 154336;154337;154338;154339;154340;154341;154342;154343;154344;154345;154346;154347 155192;155193;155194;155195;155196;155197;155198;155199;155200;155201;155202;155203;155204 155194 13 SDEDDWSKPLPPSER FGKFERGGNSRWCDKSDEDDWSKPLPPSER SDEDDWSKPLPPSERLEQELFSGGNTGINF K S D E R L 0 1 0 3 0 0 2 0 0 0 1 1 0 0 3 3 0 1 0 0 0 0 15 1 1756.7904 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0 A0A2U3TZJ9 130 144 DDX3X ATP-dependent RNA helicase DDX3X yes no 3 0.071105 10.281 By matching By MS/MS 1 1 1.0201 1.007 15.484 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8492 0.90258 NaN 1 0 Median 1.2254 1.1235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3453500 1486400 1967000 0 0 0 0 0 0 2002300 999480 1002800 1451200 486970 964230 0 0 0 0 0 0 29522 263 31042 154348;154349 155205 155205 1 SDEDKDKEGEALEVK FTDDIISQPMLKGEKSDEDKDKEGEALEVK SDEDKDKEGEALEVKENSGYLKAKQYMEEE K S D V K E 1 0 0 3 0 0 4 1 0 0 1 3 0 0 0 1 0 0 0 1 0 0 15 2 1690.7897 O94826 O94826 279 293 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2;3;4 1.4534E-12 97.911 By matching By MS/MS By MS/MS 1 3 2 1.1256 1.0688 16.858 5 Median 1.1837 1.2079 NaN 1 0 Median 1.1036 1.0596 2.7944 2 0 Median NaN NaN NaN 0 0 Median 1.0336 0.90703 23.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14142000 6491600 7650600 798450 424670 373780 11674000 5203400 6470900 0 0 0 1669500 863600 805910 0 0 0 0 0 0 29523 1728 31043 154350;154351;154352;154353;154354;154355 155206;155207;155208;155209;155210 155209 5 SDEDYLYREELAQFHR GKEVGETLLYYGCRRSDEDYLYREELAQFH DEDYLYREELAQFHRDGALTQLNVAFSREQ R S D H R D 1 2 0 2 0 1 3 0 1 0 2 0 0 1 0 1 0 0 2 0 0 0 16 1 2069.9443 P16435;H0Y4R2;E7EMD0 P16435 569 584 POR NADPH--cytochrome P450 reductase yes no 3 0.0015201 33.842 By MS/MS By matching 1 1 1.0256 0.98967 27.413 2 Median 1.1717 1.2014 NaN 1 0 Median 0.89769 0.81528 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3893800 1442100 2451700 3657800 1323300 2334500 236040 118780 117250 0 0 0 0 0 0 0 0 0 0 0 0 29524 2030 31044 154356;154357 155211 155211 1 SDEGQLSPATR HQSIEEFRAKIERARSDEGQLSPATRGAYR ERARSDEGQLSPATRGAYRDCLGRLDLQYA R S D T R G 1 1 0 1 0 1 1 1 0 0 1 0 0 0 1 2 1 0 0 0 0 0 11 0 1159.5469 Q15149;H0YDN1;E9PMV1 Q15149 714 724 PLEC Plectin yes no 2 0.016514 36.334 By MS/MS 1 1.2906 1.0877 NaN 1 Median NaN NaN NaN 0 0 Median 1.2906 1.0877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1625800 625560 1000300 0 0 0 1625800 625560 1000300 0 0 0 0 0 0 0 0 0 0 0 0 29525 2933 31045 154358 155212 155212 1 SDFDEFER ______________________________ ______________________________ M S D E R Q 0 1 0 2 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 1043.4196 P26368 P26368 2 9 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 0.0034857 98.299 By MS/MS By matching By matching By matching 1 1 1 1 1.0794 1.0119 7.7039 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0326 1.0303 NaN 1 0 Median 1.2151 1.0495 NaN 1 0 Median 0.87739 0.884 NaN 1 0 Median 1.1283 0.99378 NaN 1 0 Median 17229000 7826800 9402400 0 0 0 0 0 0 14230000 6464200 7765900 1138100 521380 616740 1579800 736580 843190 281190 104630 176550 29526 2143 31046 154359;154360;154361;154362 155213;155214 155214 2 SDFEFTLK IPRVIQLLFKEIDKKSDFEFTLKVSYLEIY FKEIDKKSDFEFTLKVSYLEIYNEEILDLL K S D L K V 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 8 0 985.47566 O95239;Q2VIQ3 O95239 130 137 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.036433 65.252 By MS/MS 2 1.1419 1.237 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1419 1.237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3451700 1615100 1836600 0 0 0 0 0 0 3451700 1615100 1836600 0 0 0 0 0 0 0 0 0 29527 1757 31047 154363;154364 155215;155216 155216 2 SDFFELLSNHHLDSQSR KKEKEDSKTRGEKIKSDFFELLSNHHLDSQ FFELLSNHHLDSQSRWSKVKDKVESDPRYK K S D S R W 0 1 1 2 0 1 1 0 2 0 3 0 0 2 0 4 0 0 0 0 0 0 17 0 2030.9446 O14776;G3V220 O14776 797 813 TCERG1 Transcription elongation regulator 1 yes no 3 3.2533E-06 80.609 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.0514 0.97182 26.938 5 Median 0.54021 0.54582 NaN 1 0 Median 1.1078 0.97182 NaN 1 0 Median 0.98509 1.0832 NaN 1 0 Median 1.0963 0.92255 7.6221 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14232000 6978100 7253500 691820 435830 255980 387100 201210 185890 11159000 5442600 5716500 1993600 898430 1095200 0 0 0 0 0 0 29528 1494 31048 154365;154366;154367;154368;154369 155217;155218;155219 155218 3 SDFFLEGPFMPPR DLGVFIPAPMAQGMRSDFFLEGPFMPPRMK MRSDFFLEGPFMPPRMKMDRDPLGGLADMF R S D P R M 0 1 0 1 0 0 1 1 0 0 1 0 1 3 3 1 0 0 0 0 0 0 13 0 1538.7228 P78344;D3DQV9;H0Y3P2;H0YCH5 P78344 348 360 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00037094 75.294 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.722 0.75381 30.439 5 Median 0.65427 0.64148 NaN 1 0 Median 0.75057 0.75381 NaN 1 0 Median 0.722 0.77192 NaN 1 0 Median 0.68694 0.61216 NaN 1 0 Median 1.2608 1.3149 NaN 1 0 Median NaN NaN NaN 0 0 Median 4692400 2654900 2037600 2549800 1465600 1084200 651440 392380 259060 1171200 636540 534630 85428 43787 41640 234630 116600 118030 0 0 0 29529 2639 31049 154370;154371;154372;154373;154374 155220;155221;155222 155221 3 SDFQVNLNNASR YKELRKPLEKEGWKKSDFQVNLNNASRSQS WKKSDFQVNLNNASRSQSSHSYDDSTLPLI K S D S R S 1 1 3 1 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 1 0 0 12 0 1363.648 C9JZR2;O60716;H0YC95 C9JZR2 847 858 CTNND1 Catenin delta-1 yes no 2 3.1534E-06 116.77 By MS/MS By MS/MS 2 2 0.80752 0.84444 27.036 4 Median 0.85414 0.82839 46.763 2 2 Median NaN NaN NaN 0 0 Median 0.80752 0.84444 1.5335 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21542000 11230000 10312000 8126700 3883400 4243200 0 0 0 13416000 7346800 6069000 0 0 0 0 0 0 0 0 0 29530 732 31050 154375;154376;154377;154378 155223;155224;155225;155226;155227 155225 5 SDFYDIVLVATPLNR TKMYEVVYQIGTETRSDFYDIVLVATPLNR SDFYDIVLVATPLNRKMSNITFLNFDPPIE R S D N R K 1 1 1 2 0 0 0 0 0 1 2 0 0 1 1 1 1 0 1 2 0 0 15 0 1721.8988 Q9UHG3 Q9UHG3 305 319 PCYOX1 Prenylcysteine oxidase 1 yes yes 2 0.0014708 39.266 By MS/MS 1 1.298 1.1323 NaN 1 Median NaN NaN NaN 0 0 Median 1.298 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 831110 337880 493230 0 0 0 831110 337880 493230 0 0 0 0 0 0 0 0 0 0 0 0 29531 4279 31051 154379 155228;155229 155229 2 SDGAEGQGQGQLLIK IGVDTIDMVMAAQPRSDGAEGQGQGQLLIK SDGAEGQGQGQLLIKTVKLAFSVTNNVIRL R S D I K T 1 0 0 1 0 3 1 4 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1499.758 Q5SRE5 Q5SRE5 798 812 NUP188 Nucleoporin NUP188 homolog yes yes 2 1.66E-06 94.297 By MS/MS 1 1.1534 1.0428 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1534 1.0428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2721400 1167800 1553600 0 0 0 0 0 0 0 0 0 2721400 1167800 1553600 0 0 0 0 0 0 29532 3074 31052 154380 155230;155231 155230 2 SDGALLLGASSLSGR APACMERQLEAARYRSDGALLLGASSLSGR SDGALLLGASSLSGRCWAGSLWLFKDPCAA R S D G R C 2 1 0 1 0 0 0 3 0 0 4 0 0 0 0 4 0 0 0 0 0 0 15 0 1402.7416 Q9BQA1 Q9BQA1 38 52 WDR77 Methylosome protein 50 yes yes 2 1.9313E-09 146.16 By MS/MS By matching By MS/MS 1 2 1 1.1262 0.97704 16.306 4 Median 1.1268 1.1249 NaN 1 0 Median 1.1395 0.97704 1.3607 2 0 Median 0.69957 0.7606 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20351000 9732300 10619000 16208000 7587400 8620600 1741400 859060 882360 2401500 1285800 1115700 0 0 0 0 0 0 0 0 0 29533 3787 31053 154381;154382;154383;154384 155232;155233;155234 155233 3 SDGIYIINLK TNLDFQMEQYIYKRKSDGIYIINLKRTWEK IYKRKSDGIYIINLKRTWEKLLLAARAIVA K S D L K R 0 0 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1134.6285 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 43 52 RPSA 40S ribosomal protein SA yes no 2 0.026204 43.808 By MS/MS By MS/MS By MS/MS 3 2 1 1.4273 1.3612 30.347 6 Median NaN NaN NaN 0 0 Median 1.7087 1.4548 31.542 3 2 Median 1.1164 1.182 34.615 2 0 Median 1.452 1.229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97227000 33504000 63723000 0 0 0 90275000 30579000 59696000 4126900 1798300 2328500 2825400 1127300 1698100 0 0 0 0 0 0 29534 232 31054 154385;154386;154387;154388;154389;154390 155235;155236;155237;155238 155238 4 SDGIYIINLKR TNLDFQMEQYIYKRKSDGIYIINLKRTWEK YKRKSDGIYIINLKRTWEKLLLAARAIVAI K S D K R T 0 1 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1290.7296 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 43 53 RPSA 40S ribosomal protein SA yes no 2;3 0.00011385 88.948 By MS/MS 2 1.15 1.2322 15.262 2 Median 1.15 1.2322 15.262 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17283000 8771000 8511700 17283000 8771000 8511700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29535 232 31055 154391;154392 155239;155240;155241 155239 3 SDGSLEDGDDVHR LTSDESTLIEDGGARSDGSLEDGDDVHRAV ARSDGSLEDGDDVHRAVDNERDGVTYSYSF R S D H R A 0 1 0 4 0 0 1 2 1 0 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1400.5804 Q9NRX5 Q9NRX5 361 373 SERINC1 Serine incorporator 1 yes yes 2;3 4.1866E-05 90.108 By MS/MS By MS/MS 4 2 0.90722 0.85495 9.6911 6 Median 0.89235 0.87983 10.791 4 0 Median 0.95618 0.80766 5.9083 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11125000 5295600 5829000 2080400 1002600 1077900 9044100 4293000 4751100 0 0 0 0 0 0 0 0 0 0 0 0 29536 4093 31056 154393;154394;154395;154396;154397;154398 155242;155243;155244;155245 155244 4 SDHLIQTDTVNLHR AFEEAVRRVLATEDRSDHLIQTDTVNLHRK RSDHLIQTDTVNLHRKPKPSSSCC______ R S D H R K 0 1 1 2 0 1 0 0 2 1 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1647.8329 P51151 P51151 179 192 RAB9A Ras-related protein Rab-9A yes yes 3;4 3.5068E-09 108.59 By MS/MS By MS/MS By matching 2 1 1 1.1089 0.97226 12.185 4 Median 1.015 0.96167 11.281 2 0 Median 1.3608 1.1505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1179 0.9076 NaN 1 0 Median 25348000 12275000 13073000 19156000 9623600 9532200 4835800 1931300 2904600 0 0 0 0 0 0 0 0 0 1356700 720120 636590 29537 2429 31057 154399;154400;154401;154402 155246;155247;155248 155246 3 SDHPGISITDLSK SAYMLWLNASREKIKSDHPGISITDLSKKA IKSDHPGISITDLSKKAGEIWKGMSKEKKE K S D S K K 0 0 0 2 0 0 0 1 1 2 1 1 0 0 1 3 1 0 0 0 0 0 13 0 1368.6885 Q08945;A0A0U1RRK2 Q08945 567 579 SSRP1 FACT complex subunit SSRP1 yes no 2;3 0.00042416 64.439 By matching By MS/MS By MS/MS By matching 1 2 5 2 1.077 0.98902 52.824 10 Median NaN NaN NaN 0 0 Median 0.14854 0.199 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2125 1.0531 6.3938 2 0 Median 0.96173 0.93189 14.353 5 3 Median 1.2641 1.0508 11.067 2 0 Median 41339000 21221000 20117000 0 0 0 3204800 2892900 311950 0 0 0 2809100 1270500 1538600 33441000 16191000 17250000 1883700 867150 1016600 29538 2743 31058 154403;154404;154405;154406;154407;154408;154409;154410;154411;154412 155249;155250;155251;155252;155253;155254 155249 6 SDIASHFSNKR RREIEKLAASLWLWKSDIASHFSNKRKKCV WLWKSDIASHFSNKRKKCVRDCEKYKPGVL K S D K R K 1 1 1 1 0 0 0 0 1 1 0 1 0 1 0 3 0 0 0 0 0 0 11 1 1260.6211 Q9H2P0;A0A2R8Y6X0 Q9H2P0 798 808 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.0079414 30.331 By MS/MS By MS/MS By matching 1 1 2 0.90053 0.98183 8.8079 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85674 0.98084 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.868 0.98281 NaN 1 0 Median 1.0294 0.91215 13.362 2 0 Median 2435500 1244100 1191400 0 0 0 0 0 0 695940 369260 326680 0 0 0 1133300 607590 525730 606270 267260 339010 29539 3946 31059 154413;154414;154415;154416 155255;155256;155257;155258 155258 4 SDIDEIVLVGGSTR MKPVQKVLEDSDLKKSDIDEIVLVGGSTRI KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K S D T R I 0 1 0 2 0 0 1 2 0 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1459.7518 P11021 P11021 354 367 HSPA5 78 kDa glucose-regulated protein yes yes 2 6.1735E-08 112.13 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1 1.3441 1.2276 10.799 8 Median 1.287 1.2224 16.585 2 1 Median 1.3441 1.17 4.057 2 0 Median 1.0942 1.1471 NaN 1 0 Median 1.76 1.5096 NaN 1 0 Median 1.1783 1.2516 NaN 1 1 Median 1.5415 1.2674 NaN 1 0 Median 63359000 27613000 35747000 30842000 13696000 17145000 23912000 10242000 13670000 5114300 2314200 2800000 823800 273920 549880 2161000 919040 1242000 506160 166900 339260 29540 1948 31060 154417;154418;154419;154420;154421;154422;154423;154424 155259;155260;155261;155262;155263;155264;155265;155266 155259 8 SDIGEVILVGGMTR IAPCQKAMQDAEVSKSDIGEVILVGGMTRM KSDIGEVILVGGMTRMPKVQQTVQDLFGRA K S D T R M 0 1 0 1 0 0 1 3 0 2 1 0 1 0 0 1 1 0 0 2 0 0 14 0 1445.7548 P38646;H0YBG6 P38646 378 391 HSPA9 Stress-70 protein, mitochondrial yes no 2 5.8839E-07 97.911 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 2 1.5085 1.3751 23.921 13 Median 1.6832 1.6052 29.227 2 0 Median 1.4819 1.2801 18.162 3 0 Median 1.1275 1.1698 34.126 2 2 Median 1.7141 1.4353 6.0574 2 0 Median 1.6278 1.6846 14.632 2 0 Median 1.4592 1.251 34.448 2 0 Median 68041000 29066000 38975000 23675000 10524000 13151000 28378000 11620000 16758000 12080000 5330900 6749300 1035100 413510 621580 2278900 911730 1367100 594720 266220 328500 29541 2277 31061;31062 154425;154426;154427;154428;154429;154430;154431;154432;154433;154434;154435;154436;154437 155267;155268;155269;155270;155271;155272;155273;155274;155275;155276;155277;155278;155279;155280;155281 155267 1030 15 SDILKDPPSEANSIQSANATTK PSVTKKNTNKKTKPKSDILKDPPSEANSIQ PSEANSIQSANATTKTSETNHTSRPRLKNV K S D T K T 3 0 2 2 0 1 1 0 0 2 1 2 0 0 2 4 2 0 0 0 0 0 22 1 2286.1339 Q8N488 Q8N488 115 136 RYBP RING1 and YY1-binding protein yes yes 3 4.0871E-13 80.412 By MS/MS By MS/MS By MS/MS 1 1 1 0.54033 0.5696 23.287 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48694 0.50757 NaN 1 1 Median 0.90514 0.79478 NaN 1 0 Median 0.54033 0.5696 NaN 1 0 Median NaN NaN NaN 0 0 Median 31420000 22177000 9243600 0 0 0 0 0 0 21092000 16398000 4693700 4954000 2478300 2475700 5374300 3300000 2074200 0 0 0 29542 3372 31063 154438;154439;154440 155282;155283;155284 155282 3 SDIPEPER EKTPVSGSLKSPVPRSDIPEPEREQKRRKI LKSPVPRSDIPEPEREQKRRKIDTHPSPSH R S D E R E 0 1 0 1 0 0 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 8 0 941.44543 Q8NI27;A0A0C4DG98;H0Y7U4;H7C477 Q8NI27 1398 1405 THOC2 THO complex subunit 2 yes no 2 0.036811 37.558 By MS/MS 1 0.77588 0.6838 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77588 0.6838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1075100 582010 493140 0 0 0 0 0 0 0 0 0 1075100 582010 493140 0 0 0 0 0 0 29543 3448 31064 154441 155285 155285 1 SDIVQLR KFPEVIINFPDPAQKSDIVQLRGPKNEVEK NFPDPAQKSDIVQLRGPKNEVEKCTKYMQK K S D L R G 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 7 0 829.46577 Q00341;A0A024R4E5;H0Y394;H7BZC3 Q00341 551 557 HDLBP Vigilin yes no 2 0.021008 59.641 By MS/MS By matching By matching 1 1 1 1.1827 1.0172 14.248 3 Plateau 0.96154 0.95311 NaN 1 0 Median 1.2213 1.0172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89331 0.77434 NaN 1 0 Median 18926000 8904400 10022000 2635300 1302100 1333200 15940000 7417400 8522800 0 0 0 0 0 0 0 0 0 350950 184960 165990 29544 4 31065 154442;154443;154444 155286 155286 1 SDKLPYK ______________________________ ______________________________ M S D Y K V 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 1 0 0 1 0 0 0 7 1 849.45962 P23526 P23526 2 8 AHCY Adenosylhomocysteinase yes yes 2 0.0034456 89.55 By MS/MS By MS/MS By matching 1 1 1 1.1826 1.1115 13.971 3 Median 1.0181 0.97483 NaN 1 0 Median 1.1826 1.1115 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3569 1.2889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13196000 6135500 7060300 7819600 3898200 3921500 3135300 1366800 1768400 0 0 0 2240900 870540 1370400 0 0 0 0 0 0 29545 2116 31066 154445;154446;154447 155287;155288;155289;155290;155291 155291 5 SDKMNIFGGFR PLDRLKIMMQVHGSKSDKMNIFGGFRQMVK HGSKSDKMNIFGGFRQMVKEGGIRSLWRGN K S D F R Q 0 1 1 1 0 0 0 2 0 1 0 1 1 2 0 1 0 0 0 0 0 0 11 1 1270.6128 Q6NUK1 Q6NUK1 229 239 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.015753 50.04 By MS/MS 1 0.9297 0.92791 NaN 1 Median 0.9297 0.92791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363400 3605000 2758400 6363400 3605000 2758400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29546 3143 31067 154448 155292 155292 1 SDKNNEFIVIHNGIITNYK ATHGEPSPVNSHPQRSDKNNEFIVIHNGII NEFIVIHNGIITNYKDLKKFLESKGYDFES R S D Y K D 0 0 4 1 0 0 1 1 1 4 0 2 0 1 0 1 1 0 1 1 0 0 19 1 2218.1382 Q06210 Q06210 112 130 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.044605 12.128 By MS/MS By matching 1 1 1.149 1.1346 3.4393 2 Median 1.1275 1.1625 NaN 1 0 Median 1.1708 1.1074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5206900 1871900 3335100 4702400 1645400 3057000 504530 226490 278040 0 0 0 0 0 0 0 0 0 0 0 0 29547 2723 31068 154449;154450 155293 155293 1 SDKPNASDPSVPLKIPLQR RRVPQNWFPIFNPERSDKPNASDPSVPLKI NASDPSVPLKIPLQRNVIPSVTRVLQQTMT R S D Q R N 1 1 1 2 0 1 0 0 0 1 2 2 0 0 4 3 0 0 0 1 0 0 19 2 2061.1219 Q9BQP7;Q5QPE7 Q9BQP7 109 127 MGME1 Mitochondrial genome maintenance exonuclease 1 yes no 3 0.063781 34.274 By MS/MS 1 2.5503 2.6418 NaN 1 Median 2.5503 2.6418 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8741600 3019500 5722200 8741600 3019500 5722200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29548 3790 31069 154451 155294 155294 1 SDKSELKAELER ______________________________ ______________________________ M S D E R K 1 1 0 1 0 0 3 0 0 0 2 2 0 0 0 2 0 0 0 0 0 0 12 2 1403.7256 Q13409 Q13409 2 13 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2;3 5.1606E-05 88.021 By MS/MS By MS/MS 2 1 1.0242 1.1281 19.711 3 Plateau 0.86906 0.9572 23.235 2 0 Median NaN NaN NaN 0 0 Median 1.0136 1.1559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19012000 8992800 10020000 13101000 6401500 6699600 0 0 0 5911400 2591300 3320100 0 0 0 0 0 0 0 0 0 29549 2811 31070 154452;154453;154454 155295;155296;155297;155298;155299;155300 155296 6 SDKTEEIAEEEETVFPK LRKQTEEKEKKEKPKSDKTEEIAEEEETVF KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K S D P K A 1 0 0 1 0 0 6 0 0 1 0 2 0 1 1 1 2 0 0 1 0 0 17 1 1979.9211 Q9NR30 Q9NR30 38 54 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 7.3304E-06 70.942 By matching By MS/MS 1 2 1.0707 1.2219 16.222 3 Plateau NaN NaN NaN 0 0 Median 0.94727 0.91469 NaN 1 0 Median 1.0606 1.2109 1.2767 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22479000 11225000 11254000 0 0 0 774260 367450 406810 21705000 10857000 10848000 0 0 0 0 0 0 0 0 0 29550 4076 31071 154455;154456;154457 155301;155302;155303;155304;155305;155306 155303 6 SDKWIDIHNPATNEVIGR PTVKLFIGGKFVESKSDKWIDIHNPATNEV WIDIHNPATNEVIGRVPQATKAEMDAAIAS K S D G R V 1 1 2 2 0 0 1 1 1 3 0 1 0 0 1 1 1 1 0 1 0 0 18 1 2064.0389 Q02252 Q02252 53 70 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes yes 3 0.015048 30.684 By MS/MS 1 0.70294 0.70236 NaN 1 Median 0.70294 0.70236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3874800 1966800 1908100 3874800 1966800 1908100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29551 2697 31072 154458 155307 155307 1 SDLAVPSELALLK WPSVPTDLLQLLLPRSDLAVPSELALLKAV PRSDLAVPSELALLKAVDTWSWGERASHEE R S D L K A 2 0 0 1 0 0 1 0 0 0 4 1 0 0 1 2 0 0 0 1 0 0 13 0 1354.7708 Q08380 Q08380 311 323 LGALS3BP Galectin-3-binding protein yes yes 2 0.0011393 58.699 By MS/MS By MS/MS By matching 5 3 1 1.2134 1.1968 41.752 9 Median 0.92686 0.89049 36.23 5 0 Median 1.518 1.2889 56.458 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5648 1.3422 NaN 1 0 Median 32147000 13362000 18785000 8176300 3998900 4177400 23776000 9298700 14478000 0 0 0 0 0 0 0 0 0 194120 64541 129580 29552 2739 31073 154459;154460;154461;154462;154463;154464;154465;154466;154467 155308;155309;155310;155311;155312;155313 155313 6 SDLEEDNER KLSEASGGRAENGERSDLEEDNEREGTENG AENGERSDLEEDNEREGTENGAIDAVPVDE R S D E R E 0 1 1 2 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1105.4524 Q8WU90 Q8WU90 381 389 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 2 0.0049104 59.245 By MS/MS By matching By MS/MS 1 1 1 1.0641 0.92809 12.222 3 Median NaN NaN NaN 0 0 Median 1.0641 0.92809 NaN 1 0 Median 1.0755 1.1047 NaN 1 0 Median 1.0015 0.87285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1849300 909650 939700 0 0 0 907830 451920 455920 490300 231200 259100 451210 226530 224680 0 0 0 0 0 0 29553 3485 31074 154468;154469;154470 155314;155315;155316 155315 3 SDLEMQYETLQEELMALKK INGLRQVLDNLTMEKSDLEMQYETLQEELM MQYETLQEELMALKKNHKEEMSQLTGQNSG K S D K K N 1 0 0 1 0 2 4 0 0 0 4 2 2 0 0 1 1 0 1 0 0 0 19 1 2298.1123 P35527;CON__P35527;K7EQQ3 P35527 272 290 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 5.0972E-25 119.4 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 3 0.14491 0.15491 120.38 12 Median 0.14491 0.15491 78.456 4 4 Median 0.11884 0.11389 71.432 4 4 Median NaN NaN NaN 0 0 Median 4.7588 4.2374 NaN 1 1 Median 0.16231 0.17326 73.597 3 3 Median NaN NaN NaN 0 0 Median 100690000 83979000 16713000 22311000 20189000 2122100 49165000 42599000 6565800 0 0 0 6262900 1192300 5070600 22954000 19999000 2954600 0 0 0 + 29554 2242 31075;31076;31077 154471;154472;154473;154474;154475;154476;154477;154478;154479;154480;154481;154482 155317;155318;155319;155320;155321;155322;155323;155324;155325;155326;155327;155328 155324 979;980 12 SDLGPSYGGWQVLDATPQER SVWNFHVWNEGWFVRSDLGPSYGGWQVLDA SYGGWQVLDATPQERSQGVFQCGPASVIGV R S D E R S 1 1 0 2 0 2 1 3 0 0 2 0 0 0 2 2 1 1 1 1 0 0 20 0 2175.0233 A0A494C0J7;Q08188 A0A494C0J7 360 379 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 2 0.00052006 49.627 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 917240 917240 0 917240 917240 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29555 459 31078 154483 155329 155329 1 SDLIDQMNASGPIK EKVISDKDLELLLDRSDLIDQMNASGPIKE RSDLIDQMNASGPIKEKMGIFKILENSEDS R S D I K E 1 0 1 2 0 1 0 1 0 2 1 1 1 0 1 2 0 0 0 0 0 0 14 0 1487.729 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7;Q9NW36 F6XU50 680 693 HELLS Lymphoid-specific helicase yes no 2 3.0262E-07 114.83 By MS/MS By matching 1 1 0.8383 0.81859 7.8662 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78862 0.86542 NaN 1 0 Median 0.8911 0.7743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8378500 4499300 3879200 0 0 0 0 0 0 7051400 3788100 3263300 1327100 711140 615920 0 0 0 0 0 0 29556 211 31079 154484;154485 155330;155331 155331 2 SDLIEVATR LKSCDGNQELLNFLRSDLIEVATRLQKGGL LLNFLRSDLIEVATRLQKGGLGYVEETSEF R S D T R L 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1002.5346 Q9UIG0 Q9UIG0 1057 1065 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0033343 99.802 By MS/MS By MS/MS 4 3 1.192 1.1065 14.767 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1522 1.1567 16.357 3 2 Median 1.2404 1.0586 16.656 3 0 Median 52664000 25816000 26848000 0 0 0 0 0 0 0 0 0 0 0 0 47327000 23341000 23985000 5337800 2474900 2862900 29557 4290 31080 154486;154487;154488;154489;154490;154491;154492 155332;155333;155334;155335;155336 155332 5 SDLKAEALASAIASTK FTFQMAVQRCVVRIRSDLKAEALASAIAST DLKAEALASAIASTKVMKAQQVVKSESGEE R S D T K V 5 0 0 1 0 0 1 0 0 1 2 2 0 0 0 3 1 0 0 0 0 0 16 1 1574.8516 Q9NVT9 Q9NVT9 189 204 ARMC1 Armadillo repeat-containing protein 1 yes yes 3 0.014182 22.826 By MS/MS 1 0.81351 0.79462 NaN 1 Median 0.81351 0.79462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4241500 2532900 1708600 4241500 2532900 1708600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29558 4140 31081 154493 155337 155337 1 SDLLLEGFNNYR HIFYQLLSGAGEHLKSDLLLEGFNNYRFLS HLKSDLLLEGFNNYRFLSNGYIPIPGQQDK K S D Y R F 0 1 2 1 0 0 1 1 0 0 3 0 0 1 0 1 0 0 1 0 0 0 12 0 1439.7045 P35580 P35580 297 308 MYH10 Myosin-10 yes yes 2 4.5882E-06 155.07 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1353 0.98211 18.7 5 Median 1.1353 1.0652 NaN 1 0 Median 1.3039 1.112 NaN 1 0 Median 0.63403 0.69251 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85934 0.91514 NaN 1 0 Median 1.1938 0.98211 NaN 1 0 Median 53198000 24456000 28742000 32140000 14161000 17979000 8685200 3717200 4968100 10334000 5596500 4737500 0 0 0 1751300 868610 882650 287540 112630 174910 29559 2245 31082 154494;154495;154496;154497;154498 155338;155339;155340;155341;155342;155343 155341 6 SDLSVIQR NPIKAEDVGYRSSSRSDLSVIQRNPKRITT GYRSSSRSDLSVIQRNPKRITTRHKKQLKK R S D Q R N 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 8 0 916.49779 Q9BVJ6 Q9BVJ6 745 752 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.047098 58.917 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29560 3855 31083 154499 155344 155344 1 SDLVNWFK DRLAHEIEALKSFSKSDLVNWFKAHRGPGS ALKSFSKSDLVNWFKAHRGPGSKMLSVHVV K S D F K A 0 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 8 0 1007.5076 O43847;G3V1R5;H0Y5G9 O43847 1066 1073 NRD1 Nardilysin yes no 2 0.022726 44.692 By MS/MS 1 1.3695 1.3501 NaN 1 Median 1.3695 1.3501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3556400 1531000 2025400 3556400 1531000 2025400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29561 1597 31084 154500 155345;155346 155345 2 SDLYAVEMK LAEIRQQIPVFRQKRSDLYAVEMKKP____ VFRQKRSDLYAVEMKKP_____________ R S D M K K 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 9 0 1054.5005 Q9NQR4 Q9NQR4 266 274 NIT2 Omega-amidase NIT2 yes yes 2 0.0025104 71.501 By MS/MS By MS/MS 1 1 1.3038 1.1484 32.079 2 Median 0.99326 0.91532 NaN 1 0 Median 1.7114 1.4408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15088000 7469700 7617800 12220000 6407000 5813000 2867500 1062800 1804800 0 0 0 0 0 0 0 0 0 0 0 0 29562 4064 31085 154501;154502 155347;155348 155347 2 SDLYSSGR RDGYGGSRDSYSSSRSDLYSSGRDRVGRQE DSYSSSRSDLYSSGRDRVGRQERGLPPSME R S D G R D 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 3 0 0 1 0 0 0 8 0 883.40356 P38159;H3BUY5 P38159 332 339 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2 2.0685E-05 117.16 By MS/MS By MS/MS By MS/MS 1 3 4 1.1891 1.1017 15.622 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0768 1.0816 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1465 1.1862 10.453 2 2 Median 1.422 1.1628 20.802 4 0 Median 20203000 9400900 10802000 0 0 0 0 0 0 1687000 738480 948510 0 0 0 15784000 7467000 8316800 2732300 1195400 1537000 29563 2273 31086 154503;154504;154505;154506;154507;154508;154509;154510 155349;155350;155351;155352;155353;155354;155355;155356 155350 8 SDMMSHLVK MLKSDASPSSIRSLKSDMMSHLVKIPGIII SIRSLKSDMMSHLVKIPGIIIAASAVRAKA K S D V K I 0 0 0 1 0 0 0 0 1 0 1 1 2 0 0 2 0 0 0 1 0 0 9 0 1046.4889 P33992;B1AHA9 P33992 142 150 MCM5 DNA replication licensing factor MCM5 yes no 2 0.033269 47.657 By MS/MS 1 0.99287 0.93842 NaN 1 Median 0.99287 0.93842 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4632900 2225300 2407600 4632900 2225300 2407600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29564 2224 31087 154511 155357 155357 1 SDMYILNESLTDPAIVK STRTEDFIIDTLELRSDMYILNESLTDPAI MYILNESLTDPAIVKVFHGADSDIEWLQKD R S D V K V 1 0 1 2 0 0 1 0 0 2 2 1 1 0 1 2 1 0 1 1 0 0 17 0 1907.955 Q01780 Q01780 347 363 EXOSC10 Exosome component 10 yes yes 2 0.0055826 29.341 By matching By MS/MS By matching 2 1 1 0.90635 0.86282 40.695 4 Median NaN NaN NaN 0 0 Median 0.69253 0.62429 59.318 2 0 Median 0.90188 0.98848 NaN 1 0 Median 0.91084 0.78396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9207600 4778900 4428700 0 0 0 1340900 675270 665600 7615700 3973600 3642000 251080 129980 121100 0 0 0 0 0 0 29565 2691 31088 154512;154513;154514;154515 155358;155359 155358 2 SDNGELEDKPPAPPVR ______________________________ DNGELEDKPPAPPVRMSSTIFSTGGKDPLS M S D V R M 1 1 1 2 0 0 2 1 0 0 1 1 0 0 4 1 0 0 0 1 0 0 16 1 1719.8428 Q13177 Q13177 2 17 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 2 1.6834E-10 107.09 By MS/MS By MS/MS By matching 1 1 1 0.71658 0.71769 8.0667 3 Plateau 0.71658 0.71769 NaN 1 0 Median 0.73083 0.67048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66653 0.61114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28963000 17220000 11743000 25362000 14858000 10504000 2566400 1693400 873050 0 0 0 1034800 669180 365620 0 0 0 0 0 0 29566 2794 31089 154516;154517;154518 155360;155361;155362 155361 3 SDNILLGMDGSVK LEFLHSNQVIHRDIKSDNILLGMDGSVKLT IKSDNILLGMDGSVKLTDFGFCAQITPEQS K S D V K L 0 0 1 2 0 0 0 2 0 1 2 1 1 0 0 2 0 0 0 1 0 0 13 0 1347.6704 Q13153;E9PM17;B3KNX7;H0YCG5 Q13153 392 404 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase no no 2 0.00034938 87.363 By MS/MS 1 1.4343 1.3454 NaN 1 Median 1.4343 1.3454 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12557000 4168700 8388100 12557000 4168700 8388100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29567 2791 31090 154519 155363 155363 1 SDNVLLGMEGSVK LEFLHANQVIHRDIKSDNVLLGMEGSVKLT IKSDNVLLGMEGSVKLTDFGFCAQITPEQS K S D V K L 0 0 1 1 0 0 1 2 0 0 2 1 1 0 0 2 0 0 0 2 0 0 13 0 1347.6704 Q13177;H7C1X3 Q13177 371 383 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes no 2 8.9067E-07 100.93 By MS/MS By matching By matching 1 1 1 0.89914 0.77196 33.756 3 Median 1.0694 1.0036 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47538 0.51359 NaN 1 0 Median 0.89914 0.77196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14940000 7659400 7280900 11984000 5739900 6244200 0 0 0 2505500 1666700 838880 450630 252810 197820 0 0 0 0 0 0 29568 2794 31091 154520;154521;154522 155364;155365 155365 2 SDPAAFESR ______________________________ ______________________________ R S D S R L 2 1 0 1 0 0 1 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 9 0 978.44067 H0YEW4;A8MRA7;I3L448;Q5TC12;H0YDD6 H0YEW4 4 12 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 no no 2 0.045126 32.32 By MS/MS 1 1.0921 0.93906 NaN 1 Median NaN NaN NaN 0 0 Median 1.0921 0.93906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 475570 232440 243130 0 0 0 475570 232440 243130 0 0 0 0 0 0 0 0 0 0 0 0 29569 540 31092 154523 155366 155366 1 SDPEGENIHAGLLKK VVRYEHANDDKSSLKSDPEGENIHAGLLKK SDPEGENIHAGLLKKLNELESDLTFKIGPE K S D K K L 1 0 1 1 0 0 2 2 1 1 2 2 0 0 1 1 0 0 0 0 0 0 15 1 1606.8315 Q6P996;H3BND4 Q6P996 537 551 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 3 0.051384 10.634 By MS/MS 1 0.85397 0.88653 NaN 1 Median 0.85397 0.88653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 845940 431940 414000 845940 431940 414000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29570 3164 31093 154524 155367 155367 1 SDPFLEFFR EVEARNLDKKDFLGKSDPFLEFFRQGDGKW KDFLGKSDPFLEFFRQGDGKWHLVYRSEVI K S D F R Q 0 1 0 1 0 0 1 0 0 0 1 0 0 3 1 1 0 0 0 0 0 0 9 0 1156.5553 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX45;Q5JX56;Q5JX61;Q5JX52 Q99829 158 166 CPNE1 Copine-1 yes no 2 0.0011629 84.568 By MS/MS By matching By matching By matching By matching 4 2 1 1 1 1.0807 1.0542 20.917 9 Median 1.0299 1.0059 15.758 4 0 Median 1.2516 1.0889 3.1127 2 0 Median 0.9777 1.0303 NaN 1 0 Median 1.2195 1.0629 NaN 1 0 Median 1.6851 1.6942 NaN 1 0 Median NaN NaN NaN 0 0 Median 15226000 7186600 8039200 8787000 4256800 4530200 4442600 1989800 2452800 1667500 813220 854290 99344 47998 51346 229230 78683 150550 0 0 0 29571 559 31094 154525;154526;154527;154528;154529;154530;154531;154532;154533 155368;155369 155369 2 SDPGLLTNTMDVFVK GLMYSIMVHALRAFRSDPGLLTNTMDVFVK SDPGLLTNTMDVFVKEPSFDWKNFEQKMLK R S D V K E 0 0 1 2 0 0 0 1 0 0 2 1 1 1 1 1 2 0 0 2 0 0 15 0 1635.8178 P78527;H0YG84 P78527 3993 4007 PRKDC DNA-dependent protein kinase catalytic subunit yes no 2 8.6992E-10 120.96 By MS/MS By matching By MS/MS By matching By matching By matching 4 2 3 1 1 1 0.88112 0.88514 24.739 12 Median 0.89399 0.87933 27.022 4 0 Median 1.3693 1.2003 23.208 2 0 Median 0.78667 0.83827 9.4487 3 0 Median 0.92197 0.88952 NaN 1 0 Median 0.8878 0.91405 NaN 1 0 Median 0.67185 0.58408 NaN 1 0 Median 143080000 75939000 67138000 48232000 25099000 23134000 4420400 1896600 2523800 86121000 46858000 39263000 2399800 1069400 1330300 1813000 968930 844090 90997 47764 43233 29572 2647 31095;31096 154534;154535;154536;154537;154538;154539;154540;154541;154542;154543;154544;154545 155370;155371;155372;155373;155374;155375;155376;155377;155378;155379;155380;155381 155371 1336 12 SDPNRETDDTLVLSFVGQTR ASIDLPGIKGLWPLRSDPNRETDDTLVLSF ETDDTLVLSFVGQTRVLMLNGEEVEETELM R S D T R V 0 2 1 3 0 1 1 1 0 0 2 0 0 1 1 2 3 0 0 2 0 0 20 1 2249.0924 Q16531;F5GY55 Q16531 415 434 DDB1 DNA damage-binding protein 1 yes no 3 9.2103E-09 73.783 By matching By matching By MS/MS By matching By matching 2 1 3 1 1 0.70912 0.80872 49.059 8 Median 0.84735 0.91346 13.088 2 0 Median 0.35577 0.3706 NaN 1 0 Median 0.64481 0.6966 10.246 3 0 Plateau 1.057 1.0348 NaN 1 0 Median 1.9204 2.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median 23627000 13231000 10396000 9199300 4558200 4641100 752060 543500 208560 12748000 7664000 5084400 220620 123540 97080 706380 341210 365170 0 0 0 29573 2985 31097 154546;154547;154548;154549;154550;154551;154552;154553 155382;155383;155384 155382 3 SDPTSYAGYIEDLKK VFPKPVTALEYTFSRSDPTSYAGYIEDLKK SDPTSYAGYIEDLKKFLKPYTLEEQKNLTV R S D K K F 1 0 0 2 0 0 1 1 0 1 1 2 0 0 1 2 1 0 2 0 0 0 15 1 1685.8148 P54709;C9JA36;C9JXZ1 P54709 98 112 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2;3 6.2856E-06 87.618 By MS/MS By matching By matching 4 2 2 0.91033 0.84454 25.582 8 Median 0.91033 0.84356 11.611 4 0 Median 0.88946 0.80317 20.581 2 0 Median 1.0429 1.1365 48.703 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67236000 32067000 35169000 56789000 26521000 30269000 5949800 3139500 2810300 4496400 2406700 2089700 0 0 0 0 0 0 0 0 0 29574 2485 31098 154554;154555;154556;154557;154558;154559;154560;154561 155385;155386;155387;155388;155389 155388 5 SDPVDPDKEPEKEDVSASGPSPEATQLAK SESPQKEDGLSSQLKSDPVDPDKEPEKEDV VSASGPSPEATQLAKQMELEQAVEHIAKLA K S D A K Q 3 0 0 4 0 1 4 1 0 0 1 3 0 0 5 4 1 0 0 2 0 0 29 2 3022.4255 Q96T58 Q96T58 2139 2167 SPEN Msx2-interacting protein yes yes 4 0.0017832 25.726 By MS/MS 1 0.32245 0.40035 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32245 0.40035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4610500 3360100 1250400 0 0 0 0 0 0 4610500 3360100 1250400 0 0 0 0 0 0 0 0 0 29575 3741 31099 154562 155390 155390 1 SDPVVSYR LKDLEEDHACIPIKKSDPVVSYRETVSEES ACIPIKKSDPVVSYRETVSEESNVLCLSKS K S D Y R E 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 2 0 0 1 2 0 0 8 0 921.4556 P13639 P13639 573 580 EEF2 Elongation factor 2 yes yes 2 0.00032689 104.21 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.94849 0.92747 22.178 6 Median 0.97116 0.92747 2.7855 2 0 Median 1.145 0.99024 41.107 2 1 Median 0.9526 1.0148 NaN 1 0 Median 0.84316 0.72661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122490000 58189000 64302000 23045000 11682000 11362000 89237000 40997000 48240000 6338200 3421800 2916400 3870800 2088200 1782600 0 0 0 0 0 0 29576 1992 31100 154563;154564;154565;154566;154567;154568 155391;155392;155393;155394;155395;155396;155397;155398;155399 155397 9 SDPYALVR LSSKDKYVKGLIEGKSDPYALVRLGTQTFC KGLIEGKSDPYALVRLGTQTFCSRVIDEEL K S D V R L 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 919.47633 Q9BSJ8 Q9BSJ8 356 363 ESYT1 Extended synaptotagmin-1 yes yes 2 0.026977 41.502 By MS/MS 1 1.0009 0.83934 NaN 1 Median NaN NaN NaN 0 0 Median 1.0009 0.83934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7992900 4048400 3944500 0 0 0 7992900 4048400 3944500 0 0 0 0 0 0 0 0 0 0 0 0 29577 3816 31101 154569 155400;155401 155400 2 SDPYLEFHK EMEARKLDNKDLFGKSDPYLEFHKQTSDGN KDLFGKSDPYLEFHKQTSDGNWLMVHRTEV K S D H K Q 0 0 0 1 0 0 1 0 1 0 1 1 0 1 1 1 0 0 1 0 0 0 9 0 1134.5346 O75131;A0A087WYQ3 O75131 159 167 CPNE3 Copine-3 yes no 2 0.0032576 66.351 By MS/MS By MS/MS By MS/MS 1 2 1 1.0069 0.87688 13.209 4 Median 0.88071 0.83912 NaN 1 0 Median 1.0116 0.86156 8.7147 2 0 Median 1.0701 1.0889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22653000 11910000 10744000 6472200 4024100 2448000 12545000 6237900 6306700 3636500 1647700 1988800 0 0 0 0 0 0 0 0 0 29578 1645 31102 154570;154571;154572;154573 155402;155403;155404;155405;155406 155402 5 SDQDHSMDEMTAVVK ______________________________ SDQDHSMDEMTAVVKIEKGVGGNNGGNGNG M S D V K I 1 0 0 3 0 1 1 0 1 0 0 1 2 0 0 2 1 0 0 2 0 0 15 0 1691.7131 P08047;H3BUU5 P08047 2 16 SP1 Transcription factor Sp1 yes no 2 1.1042E-08 122.42 By MS/MS By matching 1 1 1.3212 1.2821 37.165 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5388 1.6674 NaN 1 0 Median 1.1343 0.98579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22094000 8972300 13122000 0 0 0 0 0 0 20814000 8376700 12438000 1280100 595560 684570 0 0 0 0 0 0 29579 1897 31103 154574;154575 155407 155407 1 SDQDYILK SISVNNCVCHFSPLKSDQDYILKEGDLVKI CHFSPLKSDQDYILKEGDLVKIDLGVHVDG K S D L K E 0 0 0 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 8 0 980.48148 Q9UQ80;F8VR77;H0YIN7;F8W0A3;F8VZ69 Q9UQ80 94 101 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.0034518 107.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 1.2211 1.0453 43.957 6 Median 1.0499 0.9636 NaN 1 0 Median 1.1625 0.98731 7.4631 2 0 Median 3.1049 2.9562 NaN 1 1 Median 1.2305 1.0779 3.7212 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 370130000 142700000 227430000 55389000 27573000 27815000 32804000 15538000 17266000 86312000 15902000 70410000 195630000 83683000 111940000 0 0 0 0 0 0 29580 4360 31104 154576;154577;154578;154579;154580;154581;154582 155408;155409;155410;155411;155412;155413;155414;155415;155416 155415 9 SDQDYILKEGDLVK SISVNNCVCHFSPLKSDQDYILKEGDLVKI KSDQDYILKEGDLVKIDLGVHVDGFIANVA K S D V K I 0 0 0 3 0 1 1 1 0 1 2 2 0 0 0 1 0 0 1 1 0 0 14 1 1621.8199 Q9UQ80;F8VR77;H0YIN7;F8W0A3;F8VZ69 Q9UQ80 94 107 PA2G4 Proliferation-associated protein 2G4 yes no 2;3 2.3693E-07 116.54 By matching By MS/MS 1 2 1.1843 1.1357 10.149 3 Median 1.1843 1.1357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1502 1.0925 13.999 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48230000 22582000 25647000 6103000 2748200 3354900 0 0 0 0 0 0 42127000 19834000 22293000 0 0 0 0 0 0 29581 4360 31105 154583;154584;154585 155417;155418;155419 155418 3 SDQEAKPSTEDLGDKK ______________________________ DQEAKPSTEDLGDKKEGEYIKLKVIGQDSS M S D K K E 1 0 0 3 0 1 2 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1746.8272 B8ZZN6;P63165;B8ZZJ0;B9A032 B8ZZN6 2 17 SUMO1 Small ubiquitin-related modifier 1 yes no 3 4.7839E-05 60.209 By matching By MS/MS 1 2 0.76993 0.89013 8.9092 3 Plateau 0.68936 0.74654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76171 0.86235 4.4832 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26923000 14642000 12281000 2185200 1143700 1041400 0 0 0 24738000 13498000 11240000 0 0 0 0 0 0 0 0 0 29582 649 31106 154586;154587;154588 155420;155421 155420 2 SDQNLQTALELTR RACWVLHYFCEVKFKSDQNLQTALELTRRC FKSDQNLQTALELTRRCLIDDREMPVKVEA K S D T R R 1 1 1 1 0 2 1 0 0 0 3 0 0 0 0 1 2 0 0 0 0 0 13 0 1487.758 O95373 O95373 490 502 IPO7 Importin-7 yes yes 2 1.0113E-15 145.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.0034 0.91867 59.957 6 Median 0.92555 0.88698 20.42 2 1 Median 1.0516 0.87857 NaN 1 0 Median 0.89521 0.96059 NaN 1 0 Median 0.95736 0.81596 NaN 1 0 Median 2.9574 3.7561 NaN 1 0 Median NaN NaN NaN 0 0 Median 43705000 21016000 22689000 26935000 12937000 13997000 11619000 5644400 5974400 2801800 1534000 1267800 1257900 582090 675780 1092000 318030 773970 0 0 0 29583 1768 31107 154589;154590;154591;154592;154593;154594 155422;155423;155424;155425;155426 155422 5 SDQNLQTALELTRR RACWVLHYFCEVKFKSDQNLQTALELTRRC KSDQNLQTALELTRRCLIDDREMPVKVEAA K S D R R C 1 2 1 1 0 2 1 0 0 0 3 0 0 0 0 1 2 0 0 0 0 0 14 1 1643.8591 O95373 O95373 490 503 IPO7 Importin-7 yes yes 3 0.00066328 41.092 By MS/MS 1 1.0241 1.1378 NaN 1 Median 1.0241 1.1378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8464100 4387000 4077100 8464100 4387000 4077100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29584 1768 31108 154595 155427 155427 1 SDQSRLDSELK ESFINNLRRRVDQLKSDQSRLDSELKNMQD DQLKSDQSRLDSELKNMQDMVEDYRNKYED K S D L K N 0 1 0 2 0 1 1 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 11 1 1276.6259 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 247 257 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 0.026685 63.816 By MS/MS 2 0.1427 0.16194 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1427 0.16194 NaN 1 1 Median NaN NaN NaN 0 0 Median 4872700 4595800 276850 0 0 0 0 0 0 0 0 0 0 0 0 4872700 4595800 276850 0 0 0 + 29585 1848;735 31109 154596;154597 155428;155429 155429 2 SDQWKPLNLEEK NAENIQPGEQKYEYKSDQWKPLNLEEKKRY EYKSDQWKPLNLEEKKRYDREFLLGFQFIF K S D E K K 0 0 1 1 0 1 2 0 0 0 2 2 0 0 1 1 0 1 0 0 0 0 12 1 1485.7464 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 434 445 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 2.0556E-05 123.51 By MS/MS By MS/MS By MS/MS 3 4 1 0.8679 0.83014 14.297 8 Median 0.93748 0.89113 9.3093 3 2 Median 0.84309 0.79986 16.203 4 0 Median NaN NaN NaN 0 0 Median 0.7598 0.71127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89045000 44939000 44106000 69401000 34430000 34971000 18101000 9648600 8452600 0 0 0 1543000 861080 681910 0 0 0 0 0 0 29586 894 31110 154598;154599;154600;154601;154602;154603;154604;154605 155430;155431;155432;155433;155434;155435;155436;155437;155438 155435 9 SDRPELTGAK SPVEISEWLDQKLTKSDRPELTGAKVVVSG QKLTKSDRPELTGAKVVVSGGRGLKSGENF K S D A K V 1 1 0 1 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 10 1 1072.5513 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6;H0YKF0 P13804 207 216 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.056854 41.876 By matching By MS/MS By matching 1 1 1 0.84117 0.86724 24.167 3 Median 0.84117 0.83333 NaN 1 0 Median 1.4111 1.2902 NaN 1 0 Median 0.78202 0.86724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3367900 1648700 1719200 1906900 1041400 865500 1086900 422450 664420 374130 184900 189240 0 0 0 0 0 0 0 0 0 29587 1996 31111 154606;154607;154608 155439 155439 1 SDRREDYYDIQLSIK GKMVSYIQCKEVDYRSDRREDYYDIQLSIK SDRREDYYDIQLSIKGKKNIFESFVDYVAV R S D I K G 0 2 0 3 0 1 1 0 0 2 1 1 0 0 0 2 0 0 2 0 0 0 15 2 1899.9327 Q93009;H3BND8;F5H2X1 Q93009 341 355 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 3 0.0040764 28.212 By MS/MS 1 0.95434 1.0759 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95434 1.0759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20788000 10976000 9812300 0 0 0 0 0 0 20788000 10976000 9812300 0 0 0 0 0 0 0 0 0 29588 3574 31112 154609 155440 155440 1 SDSAFFWEER VYAMKLLSKFEMIKRSDSAFFWEERDIMAF EMIKRSDSAFFWEERDIMAFANSPWVVQLF R S D E R D 1 1 0 1 0 0 2 0 0 0 0 0 0 2 0 2 0 1 0 0 0 0 10 0 1272.5411 O75116;D6REE7;C9JFJ0;A0A0U1RQV4;Q13464 O75116 132 141 ROCK2;ROCK1 Rho-associated protein kinase 2;Rho-associated protein kinase 1 no no 2 0.00036715 81.972 By MS/MS By matching By matching By matching 1 1 1 1 1.1729 1.0877 9.8093 4 Median 1.139 1.1005 NaN 1 0 Median 1.2406 1.075 NaN 1 0 Median 1.1738 1.2831 NaN 1 0 Median 1.1719 1.0217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7039700 3217300 3822300 4026000 1825800 2200200 664390 296330 368050 2139700 1011500 1128200 209500 83672 125830 0 0 0 0 0 0 29589 1644;305 31113 154610;154611;154612;154613 155441;155442 155442 2 SDSEDICLFTK SKELRVRLTLPHSIRSDSEDICLFTKDEPN HSIRSDSEDICLFTKDEPNSTPEKTEQFYR R S D T K D 0 0 0 2 1 0 1 0 0 1 1 1 0 1 0 2 1 0 0 0 0 0 11 0 1313.5809 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 90 100 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.00084869 62.303 By MS/MS 1 1.6486 1.5712 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6486 1.5712 NaN 1 0 Median NaN NaN NaN 0 0 Median 7332400 2684800 4647600 0 0 0 0 0 0 0 0 0 0 0 0 7332400 2684800 4647600 0 0 0 29590 1716 31114 154614 155443;155444 155444 2 SDSEDICLFTKDEPNSTPEK SKELRVRLTLPHSIRSDSEDICLFTKDEPN ICLFTKDEPNSTPEKTEQFYRKLLNKHGIK R S D E K T 0 0 1 3 1 0 3 0 0 1 1 2 0 1 2 3 2 0 0 0 0 0 20 1 2311.0162 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 90 109 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 9.1342E-09 67.274 By MS/MS 2 0.81275 0.88883 3.7907 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81275 0.88883 3.7907 2 0 Median NaN NaN NaN 0 0 Median 13235000 6748200 6486400 0 0 0 0 0 0 0 0 0 0 0 0 13235000 6748200 6486400 0 0 0 29591 1716 31115 154615;154616 155445;155446 155445 2 SDSEDICLFTKDEPNSTPEKTEQFYR SKELRVRLTLPHSIRSDSEDICLFTKDEPN DEPNSTPEKTEQFYRKLLNKHGIKTVSQII R S D Y R K 0 1 1 3 1 1 4 0 0 1 1 2 0 2 2 3 3 0 1 0 0 0 26 2 3135.3979 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 90 115 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 4 0.012994 16.801 By MS/MS 1 0.63921 0.73121 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63921 0.73121 NaN 1 0 Median NaN NaN NaN 0 0 Median 7219300 4043100 3176200 0 0 0 0 0 0 0 0 0 0 0 0 7219300 4043100 3176200 0 0 0 29592 1716 31116 154617 155447;155448 155448 2 SDSEKLNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL M S D G R L 0 1 1 2 0 0 1 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 14 1 1545.7999 P62136;E9PMD7 P62136 2 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase yes no 2 2.0034E-08 151.15 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 0.95103 0.99709 13.156 5 Median 0.95103 0.94612 NaN 1 0 Median 1.2536 1.1231 NaN 1 0 Median 0.91812 0.99709 NaN 1 0 Median 1.1959 1.0586 NaN 1 0 Median 0.70799 0.7961 NaN 1 0 Median NaN NaN NaN 0 0 Median 20473000 10278000 10195000 3544700 1781400 1763300 6136500 2565200 3571300 8940100 4779800 4160300 117080 61422 55659 1734400 1090200 644130 0 0 0 29593 2569 31117 154618;154619;154620;154621;154622 155449;155450;155451;155452;155453 155450 5 SDSEVAGYIR QEYKKAEKKVWKIFKSDSEVAGYIRQAGDF WKIFKSDSEVAGYIRQAGDFHQVIIRGGGH K S D I R Q 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 2 0 0 1 1 0 0 10 0 1095.5197 Q9H3G5;H7C0X5;H7C218 Q9H3G5 424 433 CPVL Probable serine carboxypeptidase CPVL yes no 2 5.5273E-05 126.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 1 2.2829 1.9534 43.929 6 Median 2.4696 2.3459 NaN 1 1 Median 2.4936 2.0973 NaN 1 1 Median 1.112 1.0922 NaN 1 0 Median 2.297 1.98 11.971 2 1 Median 0.78542 0.79212 NaN 1 0 Median NaN NaN NaN 0 0 Median 58069000 20014000 38056000 15792000 4687700 11104000 12600000 3413200 9186400 16222000 7423900 8797700 10719000 3023300 7695800 2737000 1465400 1271700 0 0 0 29594 3952 31118 154623;154624;154625;154626;154627;154628;154629 155454;155455;155456;155457;155458;155459;155460 155454 7 SDSFENPVLQQHFR GKMKAIVEKLRFTYRSDSFENPVLQQHFRN RSDSFENPVLQQHFRNLEALALDLMEPEQA R S D F R N 0 1 1 1 0 2 1 0 1 0 1 0 0 2 1 2 0 0 0 1 0 0 14 0 1702.8063 P12956;B1AHC9 P12956 475 488 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 2.0128E-23 196.88 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 6 3 5 7 2 3 0.91337 0.80496 16.103 26 Median 0.91762 0.88237 13.767 6 0 Median 1.0424 0.89963 23.369 3 0 Median 0.79164 0.78929 11.944 5 0 Median 1.1136 1.017 12.005 7 0 Median 0.7455 0.75473 3.0563 2 0 Median 0.85313 0.69149 7.4365 3 0 Median 798070000 421100000 376960000 192540000 98425000 94114000 63830000 30660000 33170000 461080000 252780000 208300000 70264000 33545000 36719000 6564100 3701200 2862900 3784700 1987700 1797000 29595 1985 31119 154630;154631;154632;154633;154634;154635;154636;154637;154638;154639;154640;154641;154642;154643;154644;154645;154646;154647;154648;154649;154650;154651;154652;154653;154654;154655 155461;155462;155463;155464;155465;155466;155467;155468;155469;155470;155471;155472;155473;155474;155475;155476;155477;155478;155479;155480;155481;155482;155483;155484;155485;155486;155487;155488 155476 28 SDSGEQNYGER ______________________________ ______________________________ M S D E R E 0 1 1 1 0 1 2 2 0 0 0 0 0 0 0 2 0 0 1 0 0 0 11 0 1240.4956 P62995 P62995 2 12 TRA2B Transformer-2 protein homolog beta yes yes 2 0.017489 43.512 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29596 2614 31120 154656 155489 155489 1 SDSGQQQPSSVGNQSHSASDPGPIR TLYLTLKIEQRERYKSDSGQQQPSSVGNQS VGNQSHSASDPGPIRATAPMWRCSRIMHMQ K S D I R A 1 1 1 2 0 4 0 3 1 1 0 0 0 0 3 7 0 0 0 1 0 0 25 0 2522.1382 F2Z2U4;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3257 3281 TRRAP yes no 3 0.062156 6.5042 By MS/MS By MS/MS 1 1 0.67587 0.66822 0.25057 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59407 0.66704 NaN 1 0 Median 0.76892 0.66941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3320600 1760400 1560200 0 0 0 0 0 0 1486200 801230 684930 1834400 959150 875250 0 0 0 0 0 0 29597 991 31121 154657;154658 155490;155491 155491 2 SDSHGPKEDGGFR PEEIRRLEEELRQLKSDSHGPKEDGGFRHS LKSDSHGPKEDGGFRHSEAFEALQQKSQGL K S D F R H 0 1 0 2 0 0 1 3 1 0 0 1 0 1 1 2 0 0 0 0 0 0 13 1 1387.6117 Q07065 Q07065 382 394 CKAP4 Cytoskeleton-associated protein 4 yes yes 3 0.067214 12.878 By MS/MS 1 0.87236 0.88711 NaN 1 Median 0.87236 0.88711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 527030 285730 241300 527030 285730 241300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29598 2730 31122 154659 155492 155492 1 SDSILLTHDGR LSVLHAQGVIHRDIKSDSILLTHDGRVKLS RDIKSDSILLTHDGRVKLSDFGFCAQVSKE K S D G R V 0 1 0 2 0 0 0 1 1 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1212.6099 O96013 O96013 443 453 PAK4 Serine/threonine-protein kinase PAK 4 yes yes 2;3 0.004089 53.751 By MS/MS By MS/MS 2 1 1.3804 1.4629 86.344 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3804 1.4629 86.344 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7124700 2764800 4359900 0 0 0 0 0 0 7124700 2764800 4359900 0 0 0 0 0 0 0 0 0 29599 1807 31123 154660;154661;154662 155493;155494;155495;155496 155493 4 SDSIRPALNSPVERPSSDQEEGETSAQTER NILEGRIQVPFPTQRSDSIRPALNSPVERP SSDQEEGETSAQTERVPLDLSPRLEETLDF R S D E R V 2 3 1 2 0 2 5 1 0 1 1 0 0 0 3 6 2 0 0 1 0 0 30 2 3271.5189 Q9UKV5;R4GNG2;H3BRK9 Q9UKV5 507 536 AMFR E3 ubiquitin-protein ligase AMFR yes no 4 4.962E-21 68.434 By MS/MS 1 0.60157 0.5669 NaN 1 Median NaN NaN NaN 0 0 Median 0.60157 0.5669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26413000 17322000 9091500 0 0 0 26413000 17322000 9091500 0 0 0 0 0 0 0 0 0 0 0 0 29600 4316 31124 154663 155497 155497 1 SDSYVELSQYR ______________________________ KALRSDSYVELSQYRDQHFRGDNEEQEKLL R S D Y R D 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 2 1 0 0 11 0 1345.615 P52298;F8WE41 P52298 11 21 NCBP2 Nuclear cap-binding protein subunit 2 yes no 2 1.1952E-05 156.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.217 0.9987 2.1379 5 Median 1.0684 1.0269 NaN 1 0 Median 1.217 1.0091 NaN 1 0 Median 0.98932 0.9987 NaN 1 0 Median 1.242 0.97696 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.248 0.97735 NaN 1 0 Median 81614000 37826000 43788000 20431000 9794400 10636000 7244000 3182200 4061800 45506000 21122000 24384000 3410300 1550400 1859900 0 0 0 5022400 2176300 2846100 29601 2450 31125 154664;154665;154666;154667;154668;154669 155498;155499;155500;155501;155502;155503;155504;155505;155506 155500 9 SDSYVLLEHSVK LQHCLSWLYVLGQKRSDSYVLLEHSVKKAV QKRSDSYVLLEHSVKKAVHFGLPRAFAGKT R S D V K K 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 3 0 0 1 2 0 0 12 0 1375.6983 F5H0F9;Q9UJX4;H0YFB5;F5H0N1 F5H0F9 355 366 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.0054188 59.426 By MS/MS 1 0.44622 0.47417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44622 0.47417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4176400 2792000 1384400 0 0 0 0 0 0 4176400 2792000 1384400 0 0 0 0 0 0 0 0 0 29602 1019 31126 154670 155507 155507 1 SDTDGNVSQSSAIDLR SKSVPVSGINCLLDRSDTDGNVSQSSAIDL DTDGNVSQSSAIDLRKRCSQLEGHSGTRVG R S D L R K 1 1 1 3 0 1 0 1 0 1 1 0 0 0 0 4 1 0 0 1 0 0 16 0 1663.7649 V9GYM8;V9GY94 V9GYM8 18 33 ARHGEF2 yes no 3 0.056784 10.099 By MS/MS 1 1.3508 1.2648 NaN 1 Median 1.3508 1.2648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39611000 17419000 22192000 39611000 17419000 22192000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29603 4562 31127 154671 155508 155508 1 SDTFINLR HLSKNFFLTNRARERSDTFINLREVLNRFK TNRARERSDTFINLREVLNRFKLPPGEYIL R S D L R E 0 1 1 1 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 8 0 964.49779 P17655 P17655 462 469 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.0024657 108.24 By MS/MS By MS/MS 1 1 1.181 1.0687 12.352 2 Median 1.0349 0.97932 NaN 1 0 Median 1.3478 1.1662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18389000 8102300 10287000 8956700 4237800 4718900 9432700 3864600 5568100 0 0 0 0 0 0 0 0 0 0 0 0 29604 2045 31128 154672;154673 155509;155510 155509 2 SDTIDTVSVPYVFR SAMRNRKYNCTLCSRSDTIDTVSVPYVFRY RSDTIDTVSVPYVFRYFVAELAAMNIKVKL R S D F R Y 0 1 0 2 0 0 0 0 0 1 0 0 0 1 1 2 2 0 1 3 0 0 14 0 1597.7988 Q9H9Y6 Q9H9Y6 1104 1117 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.00018711 78.655 By matching By MS/MS By matching 1 1 1 0.95236 0.97144 9.4223 3 Median NaN NaN NaN 0 0 Median 0.95236 0.83914 NaN 1 0 Median 0.88321 0.97144 NaN 1 0 Median 1.1483 1.0006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6740000 3140400 3599600 0 0 0 467850 256700 211140 5954200 2769600 3184600 317950 114130 203820 0 0 0 0 0 0 29605 4004 31129 154674;154675;154676 155511;155512 155512 2 SDTLTADVIGR ______________________________ ______________________________ M S D G R R 1 1 0 2 0 0 0 1 0 1 1 0 0 0 0 1 2 0 0 1 0 0 11 0 1146.5881 Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8YER9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8YFL4;A0A2R8Y809;A0A2R8Y4V6;A0A2R8YFM3;A0A2R8Y784;A0A2R8Y4P2;A0A2R8Y787;A0A2R8Y6L2;A0A2R8Y5H6;A0A2R8Y897;A0A2R8Y597;A0A2R8YF12;A0A2R8YH53 Q15813 2 12 TBCE Tubulin-specific chaperone E yes no 2 0.011738 56.432 By MS/MS 1 1.0981 1.1023 NaN 1 Median 1.0981 1.1023 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416600 1058900 1357800 2416600 1058900 1357800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29606 373 31130 154677 155513 155513 1 SDTPLIYK LVATTFTHSYPFCWRSDTPLIYKAVPSWFV SYPFCWRSDTPLIYKAVPSWFVRVENMVDQ R S D Y K A 0 0 0 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 8 0 935.4964 P41252;A0A0A0MSX9;J3KR24 P41252 403 410 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.011909 56.011 By MS/MS By MS/MS 1 1 0.92799 0.84987 17.465 2 Median 0.75987 0.75114 NaN 1 0 Median 1.1333 0.96159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10326000 5261100 5065200 3236500 1874500 1362000 7089800 3386600 3703200 0 0 0 0 0 0 0 0 0 0 0 0 29607 2302 31131 154678;154679 155514;155515;155516 155515 3 SDTQLVVR VERRNRVLAGLYMGRSDTQLVVRQASLHVW AGLYMGRSDTQLVVRQASLHVWKIVVSNTP R S D V R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 2 0 0 8 0 916.49779 Q92616 Q92616 1894 1901 GCN1L1 Translational activator GCN1 yes yes 2 0.0065188 70.912 By MS/MS 2 1.2754 1.0808 5.0378 2 Median NaN NaN NaN 0 0 Median 1.2754 1.0808 5.0378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4878400 2118800 2759600 0 0 0 4878400 2118800 2759600 0 0 0 0 0 0 0 0 0 0 0 0 29608 3544 31132 154680;154681 155517;155518 155517 2 SDTSFMFQR TYQQQYGRSLEDDIRSDTSFMFQRVLVSLS LEDDIRSDTSFMFQRVLVSLSAGGRDEGNY R S D Q R V 0 1 0 1 0 1 0 0 0 0 0 0 1 2 0 2 1 0 0 0 0 0 9 0 1117.4862 P09525;Q6P452;B4E1S2 P09525 142 150 ANXA4 Annexin A4;Annexin yes no 2 0.00045597 125.25 By MS/MS By MS/MS 1 1 1.1496 1.0148 8.1174 2 Median 1.0243 0.95819 NaN 1 0 Median 1.2902 1.0748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28765000 14628000 14137000 23264000 12295000 10969000 5500600 2332400 3168200 0 0 0 0 0 0 0 0 0 0 0 0 29609 1917 31133 154682;154683 155519;155520;155521;155522 155520 4 SDTSGDYEITLLK EFKKHYGYSLYSAIKSDTSGDYEITLLKIC IKSDTSGDYEITLLKICGGDD_________ K S D L K I 0 0 0 2 0 0 1 1 0 1 2 1 0 0 0 2 2 0 1 0 0 0 13 0 1440.6984 P12429;D6RA82 P12429 305 317 ANXA3 Annexin A3;Annexin yes no 2 0.0044507 40.589 By MS/MS By matching 1 1 1.0616 0.95777 12.948 2 Median 1.0868 1.0496 NaN 1 0 Median 1.0371 0.87398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6271100 2826100 3445000 3934100 1656000 2278100 2337000 1170100 1166900 0 0 0 0 0 0 0 0 0 0 0 0 29610 1981 31134 154684;154685 155523;155524 155523 2 SDVDLYQVR IGMNEPLVDCEGYPRSDVDLYQVRTARHNI CEGYPRSDVDLYQVRTARHNIICLQNDHKA R S D V R T 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1093.5404 F5H5V4;F5GX23;J3KN29;O00233;F5H7X1;F5H169 F5H5V4 65 73 PSMD9 26S proteasome non-ATPase regulatory subunit 9 yes no 2 0.00060479 110.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1974 1.0608 5.5376 4 Median 1.1415 1.0842 NaN 1 0 Median 1.3288 1.1237 NaN 1 0 Median 1.0287 0.98852 NaN 1 1 Median 1.2561 1.038 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36425000 17484000 18941000 19325000 9113000 10212000 6862400 2989300 3873100 9071900 4847300 4224600 1166300 534040 632220 0 0 0 0 0 0 29611 1003 31135 154686;154687;154688;154689 155525;155526;155527;155528;155529;155530 155525 6 SDVEAIFSK SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K S D S K Y 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 994.49713 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1;G3V4M8;G3V2H6 B2R5W2 31 39 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 0.0017097 78.516 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 7 6 1.131 1.0585 13.97 21 Median 0.89275 0.83919 NaN 1 0 Median 1.4314 1.2408 21.595 2 0 Median 0.99356 0.99083 6.5209 2 0 Median 1.3819 1.16 4.7236 3 0 Plateau 1.1135 1.1515 11.323 7 0 Median 1.1995 0.96883 11.367 6 0 Median 519840000 243110000 276720000 2782000 1490900 1291100 2403500 926920 1476600 30646000 14954000 15692000 16412000 6608200 9803300 378490000 179120000 199370000 89103000 40014000 49089000 29612 582 31136 154690;154691;154692;154693;154694;154695;154696;154697;154698;154699;154700;154701;154702;154703;154704;154705;154706;154707;154708;154709;154710 155531;155532;155533;155534;155535;155536;155537;155538;155539;155540;155541;155542;155543;155544;155545;155546;155547;155548;155549;155550;155551;155552;155553;155554 155531 24 SDVEAIFSKYGK SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG VKKSDVEAIFSKYGKIVGCSVHKGFAFVQY K S D G K I 1 0 0 1 0 0 1 1 0 1 0 2 0 1 0 2 0 0 1 1 0 0 12 1 1342.6769 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1;G3V4M8;G3V2H6 B2R5W2 31 42 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 0.014886 68.893 By MS/MS 1 0.93329 0.98455 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93329 0.98455 NaN 1 1 Median NaN NaN NaN 0 0 Median 6310200 3968000 2342200 0 0 0 0 0 0 0 0 0 0 0 0 6310200 3968000 2342200 0 0 0 29613 582 31137 154711 155555 155555 1 SDVETIFSK SRVFIGNLNTALVKKSDVETIFSKYGRVAG TALVKKSDVETIFSKYGRVAGCSVHKGYAF K S D S K Y 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 9 0 1024.5077 Q9UKM9;Q5QPL9;Q5QPM1;Q5QPM2 Q9UKM9 36 44 RALY RNA-binding protein Raly yes no 2 0.0032081 66.692 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.2384 1.0169 17.507 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90893 0.86901 NaN 1 0 Median 1.2669 1.0706 0.019403 2 0 Median 1.1193 1.1494 25.375 2 0 Median 1.1004 0.89977 17.309 2 0 Median 42244000 20697000 21547000 0 0 0 0 0 0 2691200 1200100 1491100 1083500 479850 603690 35665000 17747000 17918000 2803900 1269900 1534000 29614 4313 31138 154712;154713;154714;154715;154716;154717;154718 155556;155557;155558 155556 3 SDVKFEDRFDK PNTKIQMSYSVKWKKSDVKFEDRFDKYLDP KWKKSDVKFEDRFDKYLDPSFFQHRIHWFS K S D D K Y 0 1 0 3 0 0 1 0 0 0 0 2 0 2 0 1 0 0 0 1 0 0 11 2 1384.6623 Q9HD45;Q5TB53 Q9HD45 200 210 TM9SF3 Transmembrane 9 superfamily member 3 yes no 3 0.01185 29.299 By MS/MS By matching 1 1 1.1337 1.2207 11.837 2 Median 1.0317 1.1227 NaN 1 0 Median 1.2458 1.3273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7806700 3873300 3933500 2037800 1183600 854150 5768900 2689600 3079300 0 0 0 0 0 0 0 0 0 0 0 0 29615 4037 31139 154719;154720 155559 155559 1 SDVLELTDDNFESR ______________________________ ______________________________ - S D S R I 0 1 1 3 0 0 2 0 0 0 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1638.7373 H7BZJ3 H7BZJ3 1 14 PDIA3 yes yes 2 2.4114E-08 112.15 By MS/MS By MS/MS By matching By MS/MS 2 1 3 1 1.3129 1.2409 40.576 7 Median 1.1955 1.138 12.236 2 0 Median 1.262 1.0589 NaN 1 0 Median 2.282 2.1913 49.765 3 0 Median 1.9553 1.6753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91446000 41509000 49938000 30694000 14113000 16581000 27521000 11376000 16145000 27381000 13457000 13924000 5850200 2562700 3287500 0 0 0 0 0 0 29616 1251 31140 154721;154722;154723;154724;154725;154726;154727 155560;155561;155562;155563;155564;155565;155566 155562 7 SDVLQPGAEVTTDDR ECMKLLPVYLNCVLKSDVLQPGAEVTTDDR SDVLQPGAEVTTDDRAYVRQLVTSMDVTET K S D D R A 1 1 0 3 0 1 1 1 0 0 1 0 0 0 1 1 2 0 0 2 0 0 15 0 1601.7533 P53992;G5EA31 P53992 914 928 SEC24C Protein transport protein Sec24C yes no 2 1.2032E-06 95.401 By MS/MS By MS/MS By matching 2 2 1 0.84258 0.84737 12.283 5 Median 0.79018 0.77234 15.67 2 0 Median 0.90774 0.78579 10.67 2 0 Median 0.84258 0.92671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25421000 13513000 11908000 12075000 6536900 5538200 6807700 3352600 3455100 6538600 3623800 2914800 0 0 0 0 0 0 0 0 0 29617 1134 31141 154728;154729;154730;154731;154732 155567;155568;155569;155570 155567 4 SDVLVEYQGEGR SLLPILRGASNLTWRSDVLVEYQGEGRNVT TWRSDVLVEYQGEGRNVTDPTCPSLSPGVS R S D G R N 0 1 0 1 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 2 0 0 12 0 1350.6416 P15586;H7C3P4;F6S8M0;H0YFA9 P15586 410 421 GNS N-acetylglucosamine-6-sulfatase yes no 2 3.5815E-06 107.79 By MS/MS By MS/MS By matching 2 4 1 0.6257 0.6004 83.923 7 Median 0.88324 0.84162 47.763 2 0 Median 0.63538 0.54969 91.856 4 1 Median NaN NaN NaN 0 0 Median 0.20721 0.19543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41064000 23766000 17298000 19459000 10573000 8885800 20530000 12398000 8131500 0 0 0 1075100 794350 280780 0 0 0 0 0 0 29618 2019 31142 154733;154734;154735;154736;154737;154738;154739 155571;155572;155573;155574;155575;155576;155577 155572 7 SDVNKEYYTQNMER QVRDAGLSFKDDMPKSDVNKEYYTQNMERE KSDVNKEYYTQNMEREISNSDGTRPVGMLG K S D E R E 0 1 2 1 0 1 2 0 0 0 0 1 1 0 0 1 1 0 2 1 0 0 14 1 1775.7785 Q9NW64;E5RJW4;E5RHA8 Q9NW64 110 123 RBM22 Pre-mRNA-splicing factor RBM22 yes no 3 2.9559E-06 91.076 By matching By matching By MS/MS 1 1 1 1.1308 1.0063 21.195 3 Median NaN NaN NaN 0 0 Median 1.1308 0.9968 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6331 1.4456 NaN 1 0 Median 0.98297 1.0063 NaN 1 0 Median NaN NaN NaN 0 0 Median 12467000 5634000 6833500 0 0 0 373130 196300 176830 0 0 0 721480 307350 414120 11373000 5130300 6242600 0 0 0 29619 4146 31143 154740;154741;154742 155578;155579 155579 2 SDVVPMTAENFR KIGNKPAGRIQMLLRSDVVPMTAENFRCLC LLRSDVVPMTAENFRCLCTHEKGFGFKGSS R S D F R C 1 1 1 1 0 0 1 0 0 0 0 0 1 1 1 1 1 0 0 2 0 0 12 0 1364.6395 Q9UNP9;E9PKY5;E9PEQ6 Q9UNP9 162 173 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 2 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.87198 0.84639 21.119 5 Median 1.1405 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87198 0.84972 NaN 1 0 Median 0.84722 0.70655 24.965 2 0 Median 0.83258 0.84639 NaN 1 1 Median NaN NaN NaN 0 0 Median 42162000 21015000 21147000 15905000 6740600 9164400 0 0 0 10976000 5451100 5524500 5603900 3088200 2515700 9677300 5734600 3942700 0 0 0 29620 4347 31144;31145 154743;154744;154745;154746;154747 155580;155581;155582;155583;155584;155585 155581 1927 6 SDWQLIVELKK SIDALKDWFRDEMQKSDWQLIVELKKVFEI EMQKSDWQLIVELKKVFEII__________ K S D K K V 0 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 1 0 1 0 0 11 1 1357.7606 A0A087WUT6;O60841 A0A087WUT6 1205 1215 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.025576 21.759 By MS/MS By matching 1 1 1.2826 1.3877 1.8733 2 Median 1.3383 1.3694 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2293 1.4062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3225100 1453200 1772000 1822800 853650 969180 0 0 0 1402300 599500 802800 0 0 0 0 0 0 0 0 0 29621 35 31146 154748;154749 155586 155586 1 SDYAQLLEDMQNAFR MKFKDPLKDGEAKIKSDYAQLLEDMQNAFR SDYAQLLEDMQNAFRSLED___________ K S D F R S 2 1 1 2 0 2 1 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 15 0 1799.8148 P38606 P38606 599 613 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.00011394 79.741 By MS/MS By matching 1 1 0.97198 0.97114 26.677 2 Median 1.1809 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80002 0.80419 NaN 1 0 Median NaN NaN NaN 0 0 Median 3174400 1453000 1721400 3039300 1377800 1661500 0 0 0 0 0 0 0 0 0 135100 75184 59912 0 0 0 29622 2276 31147 154750;154751 155587;155588 155587 2 SDYDGIGSR DRGSGSRGRFDDRGRSDYDGIGSRGDRSGF FDDRGRSDYDGIGSRGDRSGFGKFERGGNS R S D S R G 0 1 0 2 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 0 0 0 9 0 968.41994 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89 A0A2U3TZJ9 101 109 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.00073077 101.64 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 1 1.1963 1.0589 33.021 9 Median 1.0399 1.0224 4.9567 2 0 Median 0.78183 0.68883 48.334 2 0 Median 1.3394 1.361 NaN 1 0 Median 1.1963 0.99835 NaN 1 0 Median 1.3483 1.3876 1.4804 2 0 Median 1.547 1.3278 NaN 1 0 Median 39198000 16958000 22239000 6099700 3071000 3028700 10905000 4933700 5971500 13933000 5621100 8312300 1609800 738290 871540 5839600 2316300 3523300 809920 278120 531810 29623 263 31148 154752;154753;154754;154755;154756;154757;154758;154759;154760 155589;155590;155591;155592;155593;155594 155590 6 SDYDMVDYLNELR VLNTLQQASQAQVDKSDYDMVDYLNELRES DKSDYDMVDYLNELRESCLEAYTGIVQGLK K S D L R E 0 1 1 3 0 0 1 0 0 0 2 0 1 0 0 1 0 0 2 1 0 0 13 0 1631.7137 Q14974;J3KTM9 Q14974 750 762 KPNB1 Importin subunit beta-1 yes no 2 5.5866E-05 87.298 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 2 2 1 1 1.0518 1.047 12.777 10 Median 1.017 0.98045 4.752 2 0 Median 1.1318 0.99739 12.653 2 1 Median 1.0659 1.1339 0.21544 2 0 Median 1.0847 0.92359 28.088 2 0 Median 0.92903 0.99216 NaN 1 0 Median 1.282 1.0812 NaN 1 0 Median 52634000 23333000 29301000 8879500 4180800 4698700 18458000 7394100 11064000 22652000 10554000 12098000 1221100 523960 697180 1216900 592170 624760 206190 88014 118170 29624 2904 31149;31150 154761;154762;154763;154764;154765;154766;154767;154768;154769;154770 155595;155596;155597;155598;155599;155600;155601;155602;155603;155604 155599 1591 9 SDYLNTFEFMDK KDLAACIKGLPNVQRSDYLNTFEFMDKLGE VQRSDYLNTFEFMDKLGENLKIKLAQAKL_ R S D D K L 0 0 1 2 0 0 1 0 0 0 1 1 1 2 0 1 1 0 1 0 0 0 12 0 1508.6493 O75874 O75874 389 400 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 2 0.032347 27.329 By MS/MS By MS/MS By matching 1 2 1 1.1907 1.0789 32.808 4 Median 0.9277 0.89409 NaN 1 0 Median 1.5879 1.3931 9.5581 2 0 Median 0.6756 0.73356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4049000 1982800 2066200 2368000 1280100 1087900 1392300 525490 866850 288690 177220 111470 0 0 0 0 0 0 0 0 0 29625 1701 31151 154771;154772;154773;154774 155605;155606 155605 2 SDYMFQR LKEGIAQTVFLGLNRSDYMFQRSADGSPAL TVFLGLNRSDYMFQRSADGSPALKQIEINT R S D Q R S 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 7 0 945.40145 A0A2R8Y430;P48637;A0A2R8YF34 A0A2R8Y430 126 132 GSS Glutathione synthetase yes no 2 0.0083653 86.086 By MS/MS By MS/MS 1 1 1.501 1.3573 5.4128 2 Median 1.3454 1.3063 NaN 1 0 Median 1.6746 1.4102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15063000 6004000 9059400 6762600 3034700 3727900 8300800 2969300 5331600 0 0 0 0 0 0 0 0 0 0 0 0 29626 358 31152 154775;154776 155607;155608;155609 155609 3 SEAANGNLDFVLSFLK GCLSDSDMFSQAGLRSEAANGNLDFVLSFL EAANGNLDFVLSFLKSNTLPISLQSIRSSL R S E L K S 2 0 2 1 0 0 1 1 0 0 3 1 0 2 0 2 0 0 0 1 0 0 16 0 1723.8781 P42704 P42704 514 529 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0001111 69.01 By MS/MS By matching 1 1 1.151 1.0605 10.43 2 Median 0.99527 0.98509 NaN 1 0 Median 1.3312 1.1417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881900 1800500 2081500 2953900 1419300 1534500 928080 381160 546920 0 0 0 0 0 0 0 0 0 0 0 0 29627 2315 31153 154777;154778 155610;155611 155611 2 SEADSDKNATILELR LRNLRLEYDDLRRGRSEADSDKNATILELR SEADSDKNATILELRSQLQISNNRTLELQG R S E L R S 2 1 1 2 0 0 2 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 15 1 1660.8268 P15924 P15924 1739 1753 DSP Desmoplakin yes yes 3 0.00011328 57.414 By MS/MS By MS/MS 1 1 0.84577 0.78633 26.256 2 Median NaN NaN NaN 0 0 Median 1.0202 0.94676 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70115 0.65309 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9528700 4957200 4571500 0 0 0 8884800 4606800 4278000 0 0 0 643890 350410 293480 0 0 0 0 0 0 29628 2021 31154 154779;154780 155612;155613 155612 2 SEAEEAITSFNGHKPPGSSEPITVK TGLSRGVAFIRFDKRSEAEEAITSFNGHKP NGHKPPGSSEPITVKFAANPNQNKNVALLS R S E V K F 2 0 1 0 0 0 4 2 1 2 0 2 0 1 3 4 2 0 0 1 0 0 25 1 2611.2766 Q15717 Q15717 158 182 ELAVL1 ELAV-like protein 1 yes yes 3;4 3.0652E-08 42.384 By MS/MS By matching 3 1 0.59433 0.64007 48.866 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5571 0.59097 23.246 3 0 Plateau 0.21922 0.20526 NaN 1 0 Median 38991000 25704000 13287000 0 0 0 0 0 0 0 0 0 0 0 0 38335000 25242000 13094000 655060 462260 192800 29629 2964 31155 154781;154782;154783;154784 155614;155615;155616;155617;155618 155615 5 SEAEQKLPLGTR NFKRREKCFKCGVPKSEAEQKLPLGTRLDQ VPKSEAEQKLPLGTRLDQQTLPLGGRELSQ K S E T R L 1 1 0 0 0 1 2 1 0 0 2 1 0 0 1 1 1 0 0 0 0 0 12 1 1327.7096 P98175 P98175 241 252 RBM10 RNA-binding protein 10 yes yes 3 0.0018044 40.475 By MS/MS By matching By matching 4 1 1 1.1574 1.1999 10.12 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1409 1.2818 8.2742 4 0 Median 1.1232 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.308 1.1535 NaN 1 0 Median 5940400 2486600 3453800 0 0 0 0 0 0 5120500 2157100 2963400 440310 164460 275850 0 0 0 379590 165030 214560 29630 2671 31156 154785;154786;154787;154788;154789;154790 155619;155620 155619 2 SEAGGLKQEIMTLKEEQNK QALRSEMTDNQNNSKSEAGGLKQEIMTLKE GLKQEIMTLKEEQNKMQKEVNDLLQENEQL K S E N K M 1 0 1 0 0 2 4 2 0 1 2 3 1 0 0 1 1 0 0 0 0 0 19 2 2132.0783 P49454 P49454 1123 1141 CENPF Centromere protein F yes yes 3 2.8598E-08 77.39 By MS/MS 2 0.87292 1.0469 3.4801 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87292 1.0469 3.4801 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11183000 6186100 4997100 0 0 0 0 0 0 11183000 6186100 4997100 0 0 0 0 0 0 0 0 0 29631 2383 31157 154791;154792 155621;155622 155622 2 SEAGHLLLQK GAPGTSNHLLLAGPRSEAGHLLLQKLLRAK LAGPRSEAGHLLLQKLLRAKNVQLSTGRGS R S E Q K L 1 0 0 0 0 1 1 1 1 0 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1094.6084 O14686 O14686 4456 4465 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.0015788 64.265 By MS/MS 1 0.92229 1.0066 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92229 1.0066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2380500 1349600 1030900 0 0 0 0 0 0 2380500 1349600 1030900 0 0 0 0 0 0 0 0 0 29632 1490 31158 154793 155623 155623 1 SEAGLAGAPAR NEIVTQIDAQNKLEKSEAGLAGAPARAVSA KLEKSEAGLAGAPARAVSAVKNMNLPEIPR K S E A R A 4 1 0 0 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 11 0 998.51451 Q92572 Q92572 150 160 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.011587 60.436 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29633 3537 31159 154794 155624 155624 1 SEAHTADGISIR KKAAVWEITGAEFSKSEAHTADGISIRFPR FSKSEAHTADGISIRFPRCTRIRDDKDWKS K S E I R F 2 1 0 1 0 0 1 1 1 2 0 0 0 0 0 2 1 0 0 0 0 0 12 0 1255.6157 P49916 P49916 792 803 LIG3 DNA ligase 3 yes yes 2;3 0.00016089 72.29 By matching By MS/MS By MS/MS 1 1 3 1.3821 1.1677 18.573 5 Median NaN NaN NaN 0 0 Median 1.3854 1.1677 NaN 1 0 Median 0.89265 0.95802 NaN 1 0 Median 1.3821 1.1825 23.55 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8437100 3785100 4652000 0 0 0 427880 187920 239950 3441300 1689500 1751800 4567900 1907800 2660200 0 0 0 0 0 0 29634 2406 31160 154795;154796;154797;154798;154799 155625;155626;155627;155628;155629;155630;155631;155632 155627 8 SEALPTDLPAPSAPDLTEPK SFYDRVWAAIRDKYRSEALPTDLPAPSAPD TDLPAPSAPDLTEPKEEQPPVPSSPTEEEE R S E P K E 3 0 0 2 0 0 2 0 0 0 3 1 0 0 5 2 2 0 0 0 0 0 20 0 2048.0314 K7ELL7;P14314 K7ELL7 282 301 PRKCSH Glucosidase 2 subunit beta yes no 2 0.010013 37.954 By MS/MS 1 0.42265 0.40403 NaN 1 Median 0.42265 0.40403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5403300 3876600 1526700 5403300 3876600 1526700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29635 1378 31161 154800 155633 155633 1 SEAPNWATQDSGFY MLAMNIEKKLNQNSRSEAPNWATQDSGFY_ RSEAPNWATQDSGFY_______________ R S E F Y - 2 0 1 1 0 1 1 1 0 0 0 0 0 1 1 2 1 1 1 0 0 0 14 0 1571.6529 P60228;E5RGA2;H0YAW4 P60228 432 445 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.040715 38.567 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 767310 0 0 0 0 0 767310 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29636 2524 31162 154801 155634 155634 1 SEAQEEIGDLKR QADLQTAVVIANDIKSEAQEEIGDLKRRLH DIKSEAQEEIGDLKRRLHEAQEKNEKLTKE K S E K R R 1 1 0 1 0 1 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1373.6787 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1 A0A494C1J1 784 795 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 3 0.007164 28.361 By MS/MS 1 1.0735 1.0317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0735 1.0317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1999400 977420 1022000 0 0 0 0 0 0 0 0 0 1999400 977420 1022000 0 0 0 0 0 0 29637 469 31163 154802 155635 155635 1 SEAQLQEIR SGYLHLLYKRPLDPKSEAQLQEIRRLHQYV RPLDPKSEAQLQEIRRLHQYVKFAVQDVND K S E I R R 1 1 0 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 795 803 NUP214 Nuclear pore complex protein Nup214 yes no 2 1.161E-05 128.69 By MS/MS By MS/MS 1 2 0.73536 0.6452 32.245 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.017 1.1173 NaN 1 1 Median 0.72877 0.63934 1.29 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9415900 4751500 4664400 0 0 0 0 0 0 6264800 3055300 3209500 3151000 1696200 1454900 0 0 0 0 0 0 29638 467 31164 154803;154804;154805 155636;155637;155638 155636 3 SEASAFGASHHVAYFEASAK VGNKADLESQRQVPRSEASAFGASHHVAYF FGASHHVAYFEASAKLRLNVDEAFEQLVRA R S E A K L 6 0 0 0 0 0 2 1 2 0 0 1 0 2 0 4 0 0 1 1 0 0 20 0 2065.9494 P10301 P10301 155 174 RRAS Ras-related protein R-Ras yes yes 3;4 1.1342E-19 120.11 By MS/MS By MS/MS By matching 2 2 1 0.88557 0.8365 16.116 5 Median 0.82586 0.76615 1.4862 2 0 Median 1.1445 0.97173 21.192 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88557 0.90986 NaN 1 0 Median NaN NaN NaN 0 0 Median 73673000 40482000 33191000 65991000 36914000 29077000 4418100 1993000 2425100 0 0 0 0 0 0 3264800 1575300 1689500 0 0 0 29639 1936 31165 154806;154807;154808;154809;154810 155639;155640;155641;155642;155643;155644 155640 6 SEASLHPVLMSEAPWNTR SFQAILDHTYKMHVKSEASLHPVLMSEAPW SLHPVLMSEAPWNTRAKREKLTELMFEHYN K S E T R A 2 1 1 0 0 0 2 0 1 0 2 0 1 0 2 3 1 1 0 1 0 0 18 0 2023.9786 O96019;H7C5S0 O96019 113 130 ACTL6A Actin-like protein 6A yes no 2;3 4.3326E-16 166.48 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 5 4 2 2 0.79499 0.74796 9.8545 16 Median 0.76903 0.75767 NaN 1 0 Median 0.84778 0.74642 5.5775 2 0 Median 0.67609 0.67836 8.8515 5 0 Median 0.9287 0.80341 3.0756 4 2 Median 0.71305 0.71411 1.0151 2 0 Median 0.99206 0.84857 0.3157 2 0 Median 275620000 154660000 120970000 4630900 2496800 2134000 1177600 606280 571360 180830000 105920000 74911000 71193000 35849000 35344000 17540000 9658800 7880900 250950 123590 127360 29640 1809 31166;31167 154811;154812;154813;154814;154815;154816;154817;154818;154819;154820;154821;154822;154823;154824;154825;154826 155645;155646;155647;155648;155649;155650;155651;155652;155653;155654;155655;155656;155657;155658;155659;155660;155661;155662;155663;155664;155665 155647 580 21 SEATFQFTVER HNTAEEDMEDDTSWRSEATFQFTVERFSRL TSWRSEATFQFTVERFSRLSESVLSPPCFV R S E E R F 1 1 0 0 0 1 2 0 0 0 0 0 0 2 0 1 2 0 0 1 0 0 11 0 1313.6252 Q93009;F5H2X1;H3BUV0;H3BTM1;H3BRA2;H3BQD1;H3BMF6 Q93009 67 77 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 6.4632E-05 152.28 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0403 1.0059 44.146 5 Median 1.0403 1.0059 NaN 1 0 Median 0.41931 0.39824 NaN 1 0 Median 1.1003 1.2096 NaN 1 0 Median 1.2281 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89349 0.75731 NaN 1 0 Median 26822000 12985000 13837000 4557800 2269200 2288600 1796000 881230 914810 17827000 8712500 9114200 2496200 1061800 1434400 0 0 0 145700 60561 85144 29641 3574 31168 154827;154828;154829;154830;154831 155666;155667;155668;155669;155670;155671;155672;155673 155668 8 SEAVVEYVFSGSR QKAKQFLPFLQRAGRSEAVVEYVFSGSRLK GRSEAVVEYVFSGSRLKLYLPKETCLITFL R S E S R L 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1428.6885 Q7KZF4;H7C597 Q7KZF4 527 539 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2 7.5519E-07 140.3 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0631 1.0638 5.4856 3 Median 1.0501 1.011 NaN 1 0 Median 1.2471 1.0638 NaN 1 0 Median 1.0631 1.1282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31740000 14431000 17308000 16265000 7405300 8860200 3204800 1390100 1814600 12270000 5636100 6633700 0 0 0 0 0 0 0 0 0 29642 3214 31169 154832;154833;154834;154835 155674;155675;155676;155677;155678;155679;155680 155675 7 SEAYQQQIEMER LETVKQQIEELKQFKSEAYQQQIEMERLNH QFKSEAYQQQIEMERLNHQAELLLKKVTEE K S E E R L 1 1 0 0 0 3 3 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 12 0 1510.6722 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4229 4240 DST Dystonin yes no 2 4.3296E-15 146.11 By MS/MS By MS/MS By MS/MS 1 1 1 0.39094 0.33194 21.112 3 Median 0.41538 0.41542 NaN 1 0 Median 0.39094 0.33194 NaN 1 1 Median 0.24861 0.27242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12291000 8709200 3582200 5437300 3752100 1685200 3722300 2704000 1018300 3131700 2253100 878680 0 0 0 0 0 0 0 0 0 29643 934 31170 154836;154837;154838 155681;155682;155683 155683 3 SEDDESGAGELTR SETYLEAHRIVKMNKSEDDESGAGELTREE NKSEDDESGAGELTREELRQIAEEDFYEKL K S E T R E 1 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 13 0 1364.5692 P33993 P33993 309 321 MCM7 DNA replication licensing factor MCM7 yes yes 2 7.4802E-07 153.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1.0923 0.9646 12.161 7 Median 0.94536 0.897 NaN 1 0 Median 1.199 1.0354 4.1436 3 1 Plateau 0.82662 0.85973 13.884 2 0 Median 1.3301 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26938000 14031000 12907000 6996400 3691500 3304900 9117100 4177600 4939600 9572600 5564200 4008400 1252000 597500 654510 0 0 0 0 0 0 29644 2225 31171 154839;154840;154841;154842;154843;154844;154845 155684;155685;155686;155687;155688;155689;155690;155691;155692;155693 155690 10 SEDDESGAGELTREELR SETYLEAHRIVKMNKSEDDESGAGELTREE DDESGAGELTREELRQIAEEDFYEKLAASI K S E L R Q 1 2 0 2 0 0 5 2 0 0 2 0 0 0 0 2 1 0 0 0 0 0 17 1 1891.8395 P33993 P33993 309 325 MCM7 DNA replication licensing factor MCM7 yes yes 3 1.0347E-05 51.695 By MS/MS 1 0.86238 0.8842 NaN 1 Median 0.86238 0.8842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5250600 2678800 2571800 5250600 2678800 2571800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29645 2225 31172 154846 155694 155694 1 SEDDSAKFDSNEEDSASVFSPSFGLK QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS EEDSASVFSPSFGLKQTDKVPSKTVAAKKG K S E L K Q 2 0 1 4 0 0 3 1 0 0 1 2 0 3 1 7 0 0 0 1 0 0 26 1 2794.2093 Q02880 Q02880 1457 1482 TOP2B DNA topoisomerase 2-beta yes yes 3 0.012763 17.502 By MS/MS 1 0.52805 0.60915 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52805 0.60915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4345900 2583100 1762700 0 0 0 0 0 0 4345900 2583100 1762700 0 0 0 0 0 0 0 0 0 29646 2704 31173 154847 155695 155695 1 SEDFGVNEDLADSDAR GDFRNALLSLAKGDRSEDFGVNEDLADSDA EDFGVNEDLADSDARALYEAGERRKGTDVN R S E A R A 2 1 1 4 0 0 2 1 0 0 1 0 0 1 0 2 0 0 0 1 0 0 16 0 1738.7282 P04083 P04083 189 204 ANXA1 Annexin A1 yes yes 2 7.9239E-36 206.58 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0778 0.89989 24.279 5 Median 1.0884 1.0669 27.682 2 0 Median 1.0778 0.89667 NaN 1 0 Median 1.5076 1.464 NaN 1 0 Median 1.0119 0.89989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95745000 40487000 55258000 56651000 23317000 33334000 6509800 2869400 3640400 31239000 13640000 17599000 1344600 659880 684740 0 0 0 0 0 0 29647 1844 31174 154848;154849;154850;154851;154852 155696;155697;155698;155699;155700;155701 155697 6 SEDFSLPAYMDR ISTSVCVRAHESVVKSEDFSLPAYMDRRDH VVKSEDFSLPAYMDRRDHPLPEVAHVKHLS K S E D R R 1 1 0 2 0 0 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 0 12 0 1429.6184 P13073;H3BN72;H3BNV9;Q86WV2;H3BNI5 P13073 30 41 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2 4.5586E-06 130.94 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.72773 0.69456 28.535 7 Median 0.7357 0.70303 3.0612 2 0 Median 1.1694 0.98106 8.7362 2 0 Median 0.63182 0.64052 11.454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55613 0.43636 NaN 1 0 Median 91215000 51657000 39558000 70078000 39841000 30236000 2511800 1129400 1382500 17978000 10289000 7689500 0 0 0 0 0 0 647490 397430 250060 29648 1988 31175;31176 154853;154854;154855;154856;154857;154858;154859 155702;155703;155704;155705;155706;155707;155708;155709 155705 771 8 SEDFSLPAYMDRR ISTSVCVRAHESVVKSEDFSLPAYMDRRDH VKSEDFSLPAYMDRRDHPLPEVAHVKHLSA K S E R R D 1 2 0 2 0 0 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 0 13 1 1585.7195 P13073;H3BN72;H3BNV9;Q86WV2;H3BNI5 P13073 30 42 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes no 2;3 0.00023204 66.435 By MS/MS By matching By MS/MS By matching 2 3 2 1 0.81657 0.85591 19.924 7 Median 0.79378 0.83202 4.0025 2 0 Median 1.3199 1.1254 12.076 3 0 Median 0.75003 0.81452 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64006 0.71932 NaN 1 0 Median NaN NaN NaN 0 0 Median 88021000 48338000 39682000 78671000 43459000 35212000 3811500 1604900 2206600 4930600 2965800 1964800 0 0 0 607620 308990 298620 0 0 0 29649 1988 31177 154860;154861;154862;154863;154864;154865;154866;154867 155710;155711;155712;155713;155714;155715;155716;155717;155718;155719;155720 155712 11 SEDGEIVSTPR ASEVGKEEFLDRLIRSEDGEIVSTPRLQYY RLIRSEDGEIVSTPRLQYYDKVLRLLDVIG R S E P R L 0 1 0 1 0 0 2 1 0 1 0 0 0 0 1 2 1 0 0 1 0 0 11 0 1188.5622 Q12769;G3V198;E9PR16 Q12769 949 959 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.001709 57.532 By MS/MS By MS/MS By MS/MS 1 2 1 0.97417 0.8297 35.894 4 Median NaN NaN NaN 0 0 Median 0.95937 0.817 NaN 1 0 Median 1.1194 1.1699 51.767 2 1 Median 0.9892 0.84261 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13973000 7003500 6969100 0 0 0 3411000 1661400 1749600 8806600 4494600 4311900 1755100 847490 907600 0 0 0 0 0 0 29650 2756 31178 154868;154869;154870;154871 155721;155722;155723;155724 155722 4 SEDLDNSIDKTEAGIK ELEAINKRVKDTMARSEDLDNSIDKTEAGI EDLDNSIDKTEAGIKELQKSMERWKNMEKE R S E I K E 1 0 1 3 0 0 2 1 0 2 1 2 0 0 0 2 1 0 0 0 0 0 16 1 1733.8319 Q9UQE7 Q9UQE7 880 895 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 3.6181E-40 193.23 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 0.86818 0.92172 18.987 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74786 0.87281 29.236 2 1 Median 0.80075 0.76277 2.5163 2 2 Median 0.89464 0.97063 18.48 4 0 Median 1.1702 1.0503 13.284 2 1 Median 136140000 72642000 63500000 0 0 0 0 0 0 55735000 31176000 24559000 16475000 8167600 8307800 60923000 32027000 28896000 3007900 1270900 1736900 29651 4362 31179 154872;154873;154874;154875;154876;154877;154878;154879;154880;154881;154882 155725;155726;155727;155728;155729;155730;155731;155732;155733;155734;155735;155736 155727 12 SEDLDNSIDKTEAGIKELQK ELEAINKRVKDTMARSEDLDNSIDKTEAGI NSIDKTEAGIKELQKSMERWKNMEKEHMDA R S E Q K S 1 0 1 3 0 1 3 1 0 2 2 3 0 0 0 2 1 0 0 0 0 0 20 2 2232.1121 Q9UQE7 Q9UQE7 880 899 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 5.747E-09 79.311 By MS/MS By MS/MS 1 1 0.78454 0.93048 1.103 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7804 0.93776 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7887 0.92325 NaN 1 0 Median NaN NaN NaN 0 0 Median 19343000 10849000 8494200 0 0 0 0 0 0 12825000 7175800 5649100 0 0 0 6518100 3673000 2845000 0 0 0 29652 4362 31180 154883;154884 155737;155738;155739;155740 155738 4 SEDLLDYGPFR SRNVESYTKLGNPTRSEDLLDYGPFRDVPA NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE R S E F R D 0 1 0 2 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1310.6143 P04843;B7Z4L4 P04843 194 204 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00011219 124.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 0.92053 0.90373 30.092 7 Median 0.92053 0.87257 NaN 1 0 Median 1.0884 0.93478 0.813 2 1 Median 0.64657 0.70627 34.865 2 1 Median 1.1706 0.98657 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.43898 0.46449 NaN 1 0 Median 25968000 13514000 12454000 13943000 7434100 6508500 6398500 2926600 3471900 4582700 2610700 1972000 534930 249030 285910 0 0 0 509220 293500 215730 29653 1853 31181 154885;154886;154887;154888;154889;154890;154891 155741;155742;155743;155744;155745;155746;155747;155748;155749;155750;155751;155752;155753 155744 13 SEDPDQQYLILNTAR ADEQSLVGRFIHLLRSEDPDQQYLILNTAR SEDPDQQYLILNTARKHFGAGGNQRIRFTL R S E A R K 1 1 1 2 0 2 1 0 0 1 2 0 0 0 1 1 1 0 1 0 0 0 15 0 1761.8533 Q96QK1 Q96QK1 500 514 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 5.8983E-08 138.75 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 1.1127 0.95353 45.206 7 Median 0.89966 0.85077 NaN 1 0 Median 1.0458 0.90385 NaN 1 0 Median 0.86462 0.90984 NaN 1 1 Median 1.2559 1.1516 26.69 2 0 Median 2.1597 2.3406 3.2656 2 0 Median NaN NaN NaN 0 0 Median 57463000 25817000 31645000 27117000 13116000 14001000 9733700 4606200 5127400 4263200 2048100 2215100 10704000 4599500 6104300 5645000 1447700 4197300 0 0 0 29654 3722 31182 154892;154893;154894;154895;154896;154897;154898 155754;155755;155756 155755 3 SEDSIAGSGVEHSTPDTEPGKEESWVSIKK LVTPRKKSKSKLEEKSEDSIAGSGVEHSTP DTEPGKEESWVSIKKFIPGRRKKRPDGKQE K S E K K F 1 0 0 2 0 0 5 3 1 2 0 3 0 0 2 6 2 1 0 2 0 0 30 2 3185.5 Q02952 Q02952 780 809 AKAP12 A-kinase anchor protein 12 yes yes 4 6.5115E-06 37.054 By MS/MS By matching 2 1 0.78777 0.91737 22.643 3 Plateau 0.74239 0.84426 18.229 2 0 Median 0.58709 0.61156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23130000 12834000 10295000 19975000 11102000 8872900 3154400 1732100 1422300 0 0 0 0 0 0 0 0 0 0 0 0 29655 2705 31183 154899;154900;154901 155757;155758;155759 155759 3 SEDSSGAAGLSGLHR EDKLKREEEKREAEKSEDSSGAAGLSGLHR SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV K S E H R T 2 1 0 1 0 0 1 3 1 0 2 0 0 0 0 4 0 0 0 0 0 0 15 0 1442.675 Q86U86;E7EVG2;H0Y5B5 Q86U86 931 945 PBRM1 Protein polybromo-1 yes no 2;3 9.5811E-10 112.15 By MS/MS By MS/MS By matching 2 2 1 1.0023 0.92021 19.534 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84597 0.9336 2.5297 2 0 Median 1.0255 0.90066 3.0372 2 1 Median NaN NaN NaN 0 0 Median 1.3777 1.4134 NaN 1 0 Median 12329000 6567400 5761100 0 0 0 0 0 0 9216400 5020200 4196300 2236300 1018300 1218000 0 0 0 875790 528910 346880 29656 3273 31184 154902;154903;154904;154905;154906 155760;155761;155762;155763;155764 155760 5 SEDVWLEAAR VARNLIMKGTEMCPKSEDVWLEAARLQPGD EMCPKSEDVWLEAARLQPGDTAKAVVAQAV K S E A R L 2 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1174.5619 O94906 O94906 342 351 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00041689 122.13 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 1 1.2063 1.0264 72.722 7 Median 1.2418 1.0946 NaN 1 0 Median 3.6921 4.0045 NaN 1 0 Median 0.96281 1.0199 90.668 3 0 Median 1.2063 1.0264 NaN 1 0 Median 0.84212 0.86899 NaN 1 1 Median NaN NaN NaN 0 0 Median 36696000 16329000 20367000 1610200 789900 820320 437240 93547 343700 24751000 10877000 13873000 2718900 1172200 1546700 7179500 3396200 3783300 0 0 0 29657 1735 31185 154907;154908;154909;154910;154911;154912;154913 155765;155766;155767;155768;155769 155766 5 SEDYVELVQR SNFWGALSPDEYYARSEDYVELVQRKRVGV EYYARSEDYVELVQRKRVGVWNVPYISQAY R S E Q R K 0 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 10 0 1236.5986 O60568;H7C2V1;H7C2S8;H7C0B8 O60568 441 450 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes no 2 0.0012522 107.47 By MS/MS 1 1.2411 1.1865 NaN 1 Median 1.2411 1.1865 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5325700 2649400 2676300 5325700 2649400 2676300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29658 1621 31186 154914 155770 155770 1 SEEAHAEDSVMDHHFR ADGQWKKGFVLHKSKSEEAHAEDSVMDHHF EEAHAEDSVMDHHFRKPANDITSQLEINFG K S E F R K 2 1 0 2 0 0 3 0 3 0 0 0 1 1 0 2 0 0 0 1 0 0 16 0 1895.7857 Q8NC51 Q8NC51 330 345 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3;4 1.5409E-10 141 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 4 1.1981 1.0349 11.335 11 Median 1.2055 1.179 NaN 1 0 Median 1.1224 0.94595 15.066 3 0 Median 1.0057 1.0145 15.6 3 0 Median 1.2078 1.0515 3.6958 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76158000 34537000 41621000 5496300 2586000 2910300 9808500 4370000 5438600 17331000 8710600 8620700 43522000 18871000 24652000 0 0 0 0 0 0 29659 3414 31187 154915;154916;154917;154918;154919;154920;154921;154922;154923;154924;154925 155771;155772;155773;155774;155775;155776;155777;155778;155779;155780;155781 155780 11 SEEEEAPPDGAVAEYR KQKKVENAAKQAEKRSEEEEAPPDGAVAEY EEEEAPPDGAVAEYRREKQKYEALRKQQSK R S E Y R R 3 1 0 1 0 0 5 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 16 0 1747.7537 Q6UX04 Q6UX04 346 361 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes yes 2 0.0001323 61.435 By MS/MS By MS/MS 1 1 0.81489 0.76099 0.59796 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73188 0.76421 NaN 1 0 Median 0.90731 0.75778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5394600 3170100 2224500 0 0 0 0 0 0 3323300 1963700 1359600 2071300 1206400 864900 0 0 0 0 0 0 29660 3189 31188 154926;154927 155782;155783 155783 2 SEEEFIHINNK EGVKLQVMANSRNYKSEEEFIHINNKLRRG RNYKSEEEFIHINNKLRRGDIIGVQGNPGK K S E N K L 0 0 2 0 0 0 3 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1358.6466 Q15046;H3BVA8;J3KRL2 Q15046 165 175 KARS Lysine--tRNA ligase yes no 2 0.00011486 131.44 By MS/MS By MS/MS 1 1 1.8007 1.5209 62.955 2 Median NaN NaN NaN 0 0 Median 1.1654 0.9745 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.7823 2.3738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17596000 7845000 9750600 0 0 0 15608000 7327300 8280600 0 0 0 1987700 517720 1470000 0 0 0 0 0 0 29661 2919 31189 154928;154929 155784;155785;155786 155784 3 SEEEIDFLR QFQSFSQYRCKTAKKSEEEIDFLRSNPKIW CKTAKKSEEEIDFLRSNPKIWNVHSVLNVL K S E L R S 0 1 0 1 0 0 3 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1136.535 B0QY89;Q9Y262;B0QY90 B0QY89 251 259 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.0004831 121.62 By MS/MS By MS/MS By matching 2 1 1 1.3497 1.1818 15.059 4 Median 1.2927 1.2705 23.592 2 0 Median 1.2841 1.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4187 1.2545 NaN 1 0 Median 17475000 7980900 9494600 13274000 6230600 7043100 4119000 1708800 2410200 0 0 0 0 0 0 0 0 0 82815 41501 41314 29662 554 31190 154930;154931;154932;154933 155787;155788;155789;155790 155787 4 SEEELLVIFNK KVLAQYYTVTDEHHRSEEELLVIFNKKISK EHHRSEEELLVIFNKKISKNPTFKLLKDKV R S E N K K 0 0 1 0 0 0 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1319.6973 Q9NX58 Q9NX58 350 360 LYAR Cell growth-regulating nucleolar protein yes yes 2 0.00020129 103.56 By MS/MS 1 0.95962 0.93703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95962 0.93703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7157300 2513000 4644300 0 0 0 0 0 0 7157300 2513000 4644300 0 0 0 0 0 0 0 0 0 29663 4160 31191 154934 155791 155791 1 SEEELLVIFNKK KVLAQYYTVTDEHHRSEEELLVIFNKKISK HHRSEEELLVIFNKKISKNPTFKLLKDKVK R S E K K I 0 0 1 0 0 0 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 12 1 1447.7922 Q9NX58 Q9NX58 350 361 LYAR Cell growth-regulating nucleolar protein yes yes 2;3 5.2832E-06 130.96 By MS/MS By matching 2 1 1.1616 1.2171 17.723 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1616 1.2171 19.297 2 0 Median NaN NaN NaN 0 0 Median 0.93674 1.0006 NaN 1 0 Median NaN NaN NaN 0 0 Median 14869000 6696800 8172700 0 0 0 0 0 0 13946000 6258000 7687600 0 0 0 923970 438800 485170 0 0 0 29664 4160 31192 154935;154936;154937 155792;155793;155794;155795 155794 4 SEEEQSSSSVKKDETNVK EKEQSKQAVEMKNDKSEEEQSSSSVKKDET EQSSSSVKKDETNVKMESEGGADDSAEEGD K S E V K M 0 0 1 1 0 1 4 0 0 0 0 3 0 0 0 5 1 0 0 2 0 0 18 2 2009.9389 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V2D6;G3V5V7 B2R5W2 220 237 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 3 0.027316 15.592 By MS/MS 1 1.0438 1.142 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0438 1.142 NaN 1 0 Median NaN NaN NaN 0 0 Median 1780800 777600 1003200 0 0 0 0 0 0 0 0 0 0 0 0 1780800 777600 1003200 0 0 0 29665 582 31193 154938 155796 155796 1 SEEGPGWTILR ASSRKKPKAKQTEVKSEEGPGWTILRDDFM TEVKSEEGPGWTILRDDFMMGASMKDWDKE K S E L R D 0 1 0 0 0 0 2 2 0 1 1 0 0 0 1 1 1 1 0 0 0 0 11 0 1243.6197 Q9Y3B9 Q9Y3B9 240 250 RRP15 RRP15-like protein yes yes 2 0.00015337 82.749 By matching By matching By MS/MS By matching 1 1 1 2 1.1203 0.94213 23.288 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3422 1.4546 NaN 1 0 Median 1.1203 0.94213 NaN 1 0 Median 0.98308 1.0169 NaN 1 0 Median 1.0087 0.84842 13.658 2 0 Median 10785000 5057800 5727100 0 0 0 0 0 0 3319700 1595300 1724400 307050 130370 176680 5945200 2759900 3185300 1213000 572280 640710 29666 4417 31194 154939;154940;154941;154942;154943 155797 155797 1 SEEIKDTILQTVDLVSQETGEK KDQEKQQMFENKLIKSEEIKDTILQTVDLV ILQTVDLVSQETGEKEANIQAVDSEVGLTK K S E E K E 0 0 0 2 0 2 4 1 0 2 2 2 0 0 0 2 3 0 0 2 0 0 22 1 2461.2435 Q9H2G2 Q9H2G2 488 509 SLK STE20-like serine/threonine-protein kinase yes yes 3 6.7757E-15 94.463 By MS/MS 1 0.99059 0.95293 NaN 1 Median NaN NaN NaN 0 0 Median 0.99059 0.95293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6213000 2987200 3225700 0 0 0 6213000 2987200 3225700 0 0 0 0 0 0 0 0 0 0 0 0 29667 3942 31195 154944 155798;155799 155799 2 SEEKISDSEGFK QQHHQGPPPGGPGGRSEEKISDSEGFKANL GGRSEEKISDSEGFKANLSLLRRPGEKTYT R S E F K A 0 0 0 1 0 0 3 1 0 1 0 2 0 1 0 3 0 0 0 0 0 0 12 1 1354.6252 P23246 P23246 268 279 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 0.00090622 68.44 By MS/MS By MS/MS By MS/MS 1 2 1 0.96793 1.0842 29.684 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2486 1.4289 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96793 1.0842 12.5 2 1 Median 0.78748 0.71119 NaN 1 1 Median 17909000 8262100 9646500 0 0 0 0 0 0 2000700 805210 1195500 0 0 0 14203000 6616500 7586600 1704800 840370 864440 29668 2107 31196 154945;154946;154947;154948 155800;155801;155802;155803 155803 4 SEENEEPMETDQNAK GIFSVSSASLVEVHKSEENEEPMETDQNAK SEENEEPMETDQNAKEEEKMQVDQEEPHVE K S E A K E 1 0 2 1 0 1 5 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 15 0 1749.6999 P34932;A0A087WYC1 P34932 503 517 HSPA4 Heat shock 70 kDa protein 4 yes no 2 1.6761E-09 146.16 By MS/MS By matching 1 1 0.99747 0.85324 1.6077 2 Median NaN NaN NaN 0 0 Median 0.98105 0.84359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0142 0.86299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4482500 2291400 2191000 0 0 0 4071800 2044200 2027700 0 0 0 410640 247260 163380 0 0 0 0 0 0 29669 2230 31197 154949;154950 155804;155805 155804 2 SEENEEPMETDQNAKEEEK GIFSVSSASLVEVHKSEENEEPMETDQNAK EEPMETDQNAKEEEKMQVDQEEPHVEEQQQ K S E E K M 1 0 2 1 0 1 8 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 19 1 2264.9227 P34932;A0A087WYC1 P34932 503 521 HSPA4 Heat shock 70 kDa protein 4 yes no 3 1.5295E-10 95.814 By matching By MS/MS 1 1 0.93683 0.92846 4.0911 2 Median 0.90247 0.95571 NaN 1 0 Median 0.97249 0.90199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11284000 5297200 5986400 1422700 852420 570230 9860900 4444800 5416100 0 0 0 0 0 0 0 0 0 0 0 0 29670 2230 31198 154951;154952 155806;155807 155807 2 SEEPAGQILSHLSSELK PTSSQDEELMEVVEKSEEPAGQILSHLSSE EPAGQILSHLSSELKEMSTSNFESSPEVEE K S E L K E 1 0 0 0 0 1 3 1 1 1 3 1 0 0 1 4 0 0 0 0 0 0 17 0 1823.9265 Q9UQ35 Q9UQ35 1245 1261 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 1.9304E-06 83.106 By MS/MS By MS/MS By matching 3 5 1 0.93572 0.83139 30.875 9 Median 1.0595 1.0012 30.139 3 0 Median 0.87773 0.78278 10.188 5 0 Median 0.48084 0.53561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47857000 24799000 23058000 10236000 4711500 5524800 37111000 19730000 17381000 509240 356670 152570 0 0 0 0 0 0 0 0 0 29671 4359 31199 154953;154954;154955;154956;154957;154958;154959;154960;154961 155808;155809;155810;155811;155812 155810 5 SEEPDSITK VYTGGTEVMVPSFCKSEEPDSITKSISSPS VPSFCKSEEPDSITKSISSPSVSSETMDKP K S E T K S 0 0 0 1 0 0 2 0 0 1 0 1 0 0 1 2 1 0 0 0 0 0 9 0 1004.4662 P49792 P49792 2793 2801 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0074886 51.346 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.85132 0.83368 7.5344 6 Median NaN NaN NaN 0 0 Median 0.8673 0.74187 NaN 1 0 Median 0.7996 0.87774 5.5654 2 0 Median 0.87254 0.81217 1.9805 2 0 Median NaN NaN NaN 0 0 Median 1.0296 0.89226 NaN 1 0 Median 9408300 5127600 4280700 0 0 0 1180500 666150 514320 5779400 3156800 2622600 2236000 1202300 1033700 0 0 0 212540 102400 110130 29672 2401 31200 154962;154963;154964;154965;154966;154967 155813;155814;155815;155816;155817;155818 155817 6 SEEPEVPDQEGLQR VPGTPGLPGSTGNPKSEEPEVPDQEGLQRI KSEEPEVPDQEGLQRITGLSPGRSALIVAV K S E Q R I 0 1 0 1 0 2 4 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 14 0 1611.7376 H3BT44;H3BPQ9;H3BR82;H3BMF4;Q9H2V7 H3BT44 36 49 SPNS1 Protein spinster homolog 1 yes no 2 1.2385E-05 88.596 By MS/MS 1 1.0735 0.90855 NaN 1 Median NaN NaN NaN 0 0 Median 1.0735 0.90855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4210700 2126500 2084200 0 0 0 4210700 2126500 2084200 0 0 0 0 0 0 0 0 0 0 0 0 29673 1211 31201 154968 155819 155819 1 SEEQLKEEGIEYK PSVIYTHPEVAWVGKSEEQLKEEGIEYKVG GKSEEQLKEEGIEYKVGKFPFAANSRAKTN K S E Y K V 0 0 0 0 0 1 5 1 0 1 1 2 0 0 0 1 0 0 1 0 0 0 13 1 1580.757 E9PEX6;P09622 E9PEX6 382 394 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2;3 4.2291E-06 115.18 By MS/MS By MS/MS By MS/MS 1 2 3 1.2023 1.2294 38.796 6 Median 0.66577 0.63325 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.99764 1.044 10.087 2 2 Median 1.6042 1.6035 16.448 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58220000 28353000 29867000 22979000 13156000 9822800 0 0 0 12117000 6285800 5831100 23124000 8910500 14213000 0 0 0 0 0 0 29674 915 31202 154969;154970;154971;154972;154973;154974 155820;155821;155822;155823;155824;155825;155826 155824 7 SEESVSRLPEEIR TERLALQALTEKLLRSEESVSRLPEEIRRL LRSEESVSRLPEEIRRLEEELRQLKSDSHG R S E I R R 0 2 0 0 0 0 4 0 0 1 1 0 0 0 1 3 0 0 0 1 0 0 13 1 1529.7686 Q07065 Q07065 359 371 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00012385 125.74 By MS/MS 1 0.78176 0.77022 NaN 1 Median 0.78176 0.77022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12958000 7186900 5771000 12958000 7186900 5771000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29675 2730 31203 154975 155827;155828 155827 2 SEETADLLAEK QMKEEATMANEALMRSEETADLLAEKAQIT ALMRSEETADLLAEKAQITEEEAKLLAQKA R S E E K A 2 0 0 1 0 0 3 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1204.5823 P35240 P35240 377 387 NF2 Merlin yes yes 2 0.00083547 86.624 By MS/MS By MS/MS 1 1 1.4303 1.3367 37.932 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7069 1.7479 NaN 1 1 Median 1.1985 1.0222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11022000 5310600 5711700 0 0 0 0 0 0 8887000 4334500 4552500 2135300 976140 1159200 0 0 0 0 0 0 29676 2234 31204 154976;154977 155829;155830 155830 2 SEETLDEGPPK VKNVKLNEDKPKETKSEETLDEGPPKYTKS KETKSEETLDEGPPKYTKSVLKKGDKTNFP K S E P K Y 0 0 0 1 0 0 3 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 11 0 1200.551 Q00688 Q00688 100 110 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.00018924 101.11 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 3 0.85434 0.70729 13.398 7 Median 0.62963 0.61776 11.444 2 0 Median 0.9456 0.80488 NaN 1 0 Median 0.67842 0.63823 NaN 1 0 Median 0.93839 0.77681 7.4898 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17063000 9292600 7770300 3430800 1683100 1747700 1528100 751670 776430 6859900 4154000 2705900 5244200 2703800 2540400 0 0 0 0 0 0 29677 2677 31205 154978;154979;154980;154981;154982;154983;154984 155831;155832;155833;155834;155835;155836;155837 155833 7 SEETLDEGPPKYTK VKNVKLNEDKPKETKSEETLDEGPPKYTKS KSEETLDEGPPKYTKSVLKKGDKTNFPKKG K S E T K S 0 0 0 1 0 0 3 1 0 0 1 2 0 0 2 1 2 0 1 0 0 0 14 1 1592.757 Q00688 Q00688 100 113 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2;3 0.018957 54.898 By MS/MS By matching By MS/MS 2 1 2 0.8054 0.73708 21.868 5 Median NaN NaN NaN 0 0 Median 0.79663 0.73016 1.3348 2 0 Median 0.51621 0.5255 NaN 1 0 Median 0.99522 0.89544 3.0061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8174600 4111100 4063500 0 0 0 3283100 1568200 1714800 1057600 666480 391170 3833900 1876400 1957500 0 0 0 0 0 0 29678 2677 31206 154985;154986;154987;154988;154989 155838;155839;155840 155838 2 SEETNTEIVECILK STEFRNIQKLPVESKSEETNTEIVECILKR KSEETNTEIVECILKRGQKATLLQQRREGE K S E L K R 0 0 1 0 1 0 4 0 0 2 1 1 0 0 0 1 2 0 0 1 0 0 14 0 1663.7975 P46013 P46013 893 906 MKI67 Antigen KI-67 yes yes 2 0.00076503 61.353 By MS/MS 1 1.1101 1.2085 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1101 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2719600 1146300 1573300 0 0 0 0 0 0 2719600 1146300 1573300 0 0 0 0 0 0 0 0 0 29679 2335 31207 154990 155841;155842 155842 2 SEEVRPNIAEIEDIR GSIHVSSAITEDQKKSEEVRPNIAEIEDIR SEEVRPNIAEIEDIRVLQENNEGLRAFLLT K S E I R V 1 2 1 1 0 0 4 0 0 3 0 0 0 0 1 1 0 0 0 1 0 0 15 1 1768.8955 Q96Q89 Q96Q89 864 878 KIF20B Kinesin-like protein KIF20B yes yes 3 0.00027663 45.33 By MS/MS 1 0.72585 0.91692 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72585 0.91692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2984100 1857100 1127000 0 0 0 0 0 0 2984100 1857100 1127000 0 0 0 0 0 0 0 0 0 29680 3717 31208 154991 155843 155843 1 SEEWADNHLPLTDAELAR LGQMVLSGVDTVLGKSEEWADNHLPLTDAE WADNHLPLTDAELARIATSLDGFDVASVQQ K S E A R I 3 1 1 2 0 0 3 0 1 0 3 0 0 0 1 1 1 1 0 0 0 0 18 0 2065.9705 O60664;K7ERZ3 O60664 196 213 PLIN3 Perilipin-3 yes no 3 0.00041715 35.64 By MS/MS By matching By MS/MS By matching 2 3 1 2 0.87726 0.75083 24.34 8 Median 0.78842 0.78159 61.305 2 0 Median 0.87372 0.74867 0.33302 3 0 Median 0.65901 0.71485 NaN 1 0 Median 0.99455 0.85772 9.2957 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15547000 8281200 7265300 8451000 4498600 3952300 3617000 1728600 1888400 3024400 1858300 1166100 454240 195730 258510 0 0 0 0 0 0 29681 1624 31209 154992;154993;154994;154995;154996;154997;154998;154999 155844;155845;155846;155847;155848 155848 5 SEFDGDLQSQLLSK TNQTRGQIPQILYYRSEFDGDLQSQLLSKA RSEFDGDLQSQLLSKANEEDKNCSRALSVV R S E S K A 0 0 0 2 0 2 1 1 0 0 3 1 0 1 0 3 0 0 0 0 0 0 14 0 1565.7573 O75592;A0A499FJI4 O75592 1885 1898 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 yes no 2 0.0062416 53.237 By MS/MS 1 1.494 1.4835 NaN 1 Median 1.494 1.4835 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4088700 1435300 2653400 4088700 1435300 2653400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29682 477 31210 155000 155849 155849 1 SEFEQNLSEK DHLRDVLRVQEQELKSEFEQNLSEKLSEQE EQELKSEFEQNLSEKLSEQELQFRRLSQEQ K S E E K L 0 0 1 0 0 1 3 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 10 0 1209.5513 Q16891;B9A067;C9J406;H7C463 Q16891 507 516 IMMT MICOS complex subunit MIC60 yes no 2 0.00038066 93.551 By MS/MS By MS/MS By MS/MS 1 1 1 1.2531 1.0356 23.033 3 Median 0.85638 0.80759 NaN 1 0 Median 1.4644 1.2795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2531 1.0356 NaN 1 0 Median 14926000 6568400 8357600 4804400 2486500 2317900 8609200 3489400 5119800 0 0 0 0 0 0 0 0 0 1512400 592510 919920 29683 3001 31211 155001;155002;155003 155850;155851;155852;155853;155854;155855 155851 6 SEFQAIIPAVNSHIQSDLLR TQEFFLIVKTLYHLKSEFQAIIPAVNSHIQ IIPAVNSHIQSDLLRTVILEIPELLSPVEH K S E L R T 2 1 1 1 0 2 1 0 1 3 2 0 0 1 1 3 0 0 0 1 0 0 20 0 2237.1804 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 650 669 MSH3 DNA mismatch repair protein Msh3 yes no 3 7.9134E-05 37.552 By matching By MS/MS 1 1 1.0773 1.0618 0.008082 2 Median NaN NaN NaN 0 0 Median 1.2008 1.0617 NaN 1 0 Median 0.96645 1.0618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3930500 1775400 2155100 0 0 0 532530 246980 285550 3397900 1528400 1869500 0 0 0 0 0 0 0 0 0 29684 2080 31212 155004;155005 155856;155857 155856 2 SEFVILR NGVLSFIKHVLFPLKSEFVILRDEKWGGNK KHVLFPLKSEFVILRDEKWGGNKTYTAYVD K S E L R D 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 7 0 862.49125 P54577;A0A0C4DGZ5 P54577 273 279 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.025249 54.525 By matching By matching By MS/MS By matching 1 2 2 2 1.3879 1.3442 10.665 7 Median 1.3707 1.3442 NaN 1 0 Median 1.5077 1.3124 5.3305 2 0 Median 1.4165 1.4528 0.29787 2 0 Median 1.3183 1.1447 8.4272 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14313000 5698400 8614500 4058700 1828100 2230600 6219500 2375100 3844400 3483200 1264700 2218500 551590 230500 321090 0 0 0 0 0 0 29685 2482 31213 155006;155007;155008;155009;155010;155011;155012 155858 155858 1 SEFVILRDEK NGVLSFIKHVLFPLKSEFVILRDEKWGGNK LFPLKSEFVILRDEKWGGNKTYTAYVDLEK K S E E K W 0 1 0 1 0 0 2 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1234.6558 P54577;A0A0C4DGZ5 P54577 273 282 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2;3 0.00063967 80.231 By MS/MS 3 0.96137 0.96297 13.839 3 Median 0.96137 0.96297 13.839 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55258000 28603000 26655000 55258000 28603000 26655000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29686 2482 31214 155013;155014;155015 155859;155860;155861 155859 3 SEGALELADVSNELPGLK NPIEDEAVIASLLEKSEGALELADVSNELP ALELADVSNELPGLKWMPGITQWKVMTKDG K S E L K W 2 0 1 1 0 0 3 2 0 0 4 1 0 0 1 2 0 0 0 1 0 0 18 0 1840.9418 Q08J23 Q08J23 339 356 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 5.0267E-06 73.848 By MS/MS By MS/MS 2 2 0.99775 0.9274 8.2953 4 Median 0.93949 0.90067 9.0842 2 0 Median 1.1013 0.95673 9.3513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20886000 10074000 10811000 9275700 4846000 4429700 11610000 5228200 6381700 0 0 0 0 0 0 0 0 0 0 0 0 29687 2745 31215 155016;155017;155018;155019 155862;155863;155864;155865;155866;155867;155868 155867 7 SEGDSVGESVHGKPSVVYR ______________________________ SVGESVHGKPSVVYRFFTRLGQIYQSWLDK M S E Y R F 0 1 0 1 0 0 2 3 1 0 0 1 0 0 1 4 0 0 1 4 0 0 19 1 1987.9599 O15258;Q5T092;A0A0A0MR06;Q5T091;Q5T093 O15258 2 20 RER1 Protein RER1 yes no 3;4 9.1747E-18 132.79 By MS/MS By MS/MS By MS/MS 4 4 2 1.0772 1.0702 15.645 10 Median 0.95898 0.98181 6.5869 4 0 Median 1.171 1.0737 9.907 4 1 Median 1.1954 1.4103 11.22 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 314000000 148450000 165550000 99418000 50153000 49264000 189350000 86908000 102440000 25234000 11388000 13845000 0 0 0 0 0 0 0 0 0 29688 1533 31216;31217 155020;155021;155022;155023;155024;155025;155026;155027;155028;155029 155869;155870;155871;155872;155873;155874;155875;155876;155877;155878;155879;155880;155881;155882;155883;155884;155885;155886 155881 18 SEGETIMSSSMGK GAKGKEVDNFVDKLKSEGETIMSSSMGKRT LKSEGETIMSSSMGKRTSEATKMHAPPINM K S E G K R 0 0 0 0 0 0 2 2 0 1 0 1 2 0 0 4 1 0 0 0 0 0 13 0 1342.5745 B0YIW6;P48444 B0YIW6 285 297 ARCN1 Coatomer subunit delta yes no 2 0.00024815 79.693 By MS/MS By MS/MS 1 2 1.0421 0.99632 9.2665 3 Median 1.0421 0.99632 NaN 1 0 Median 1.0815 0.92972 11.825 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10595000 5370500 5224400 5370300 2888800 2481500 5224600 2481700 2742900 0 0 0 0 0 0 0 0 0 0 0 0 29689 561 31218 155030;155031;155032 155887;155888;155889;155890;155891 155888 5 SEGFDTYR SMDSSHVSLVQLTLRSEGFDTYRCDRNLAM LVQLTLRSEGFDTYRCDRNLAMGVNLTSMS R S E Y R C 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 8 0 973.41412 P12004 P12004 54 61 PCNA Proliferating cell nuclear antigen yes yes 2 1.1211E-09 178.6 By matching By MS/MS By matching By MS/MS By matching By matching 1 4 1 2 1 1 1.1774 1.0512 16.33 10 Median 1.0542 0.98537 NaN 1 0 Median 1.3975 1.2055 17.878 4 0 Median 1.0767 1.0485 NaN 1 0 Median 1.1354 0.88143 20.167 2 0 Median 1.0629 1.0539 NaN 1 0 Median 1.2566 1.0669 NaN 1 0 Median 116620000 52058000 64564000 34288000 16584000 17703000 34237000 14281000 19957000 13259000 6201300 7057900 29587000 12676000 16911000 3952700 1741300 2211400 1299000 574750 724280 29690 1974 31219 155033;155034;155035;155036;155037;155038;155039;155040;155041;155042 155892;155893;155894;155895 155893 4 SEGGEDYTGATVIEPLK LRQAMHEGLLMPVVKSEGGEDYTGATVIEP GGEDYTGATVIEPLKGVRPQDRAGAAWELL K S E L K G 1 0 0 1 0 0 3 3 0 1 1 1 0 0 1 1 2 0 1 1 0 0 17 0 1764.8418 M0R2B7;P28340;A0A087WYJ2;M0QZR8;A0A2R8Y705;A0A2R8Y7K6 M0R2B7 575 591 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 1.3631E-10 105.17 By MS/MS By matching 1 1 0.71373 0.77425 25.239 2 Median 0.95654 0.92552 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53255 0.6477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16161000 7919400 8241400 11655000 5115900 6539100 0 0 0 4505700 2803400 1702200 0 0 0 0 0 0 0 0 0 29691 1436 31220 155043;155044 155896;155897 155896 2 SEGGLGGNWYAMDNSGEHVTWR DPSTLEQYDLSSLAKSEGGLGGNWYAMDNS NWYAMDNSGEHVTWRKYYINVCRPLNPVPG K S E W R K 1 1 2 1 0 0 2 5 1 0 1 0 1 0 0 2 1 2 1 1 0 0 22 0 2422.0397 P11717 P11717 786 807 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 3 6.3004E-13 80.303 By MS/MS By matching 2 2 1.2403 1.1155 10.088 4 Median 1.245 1.2219 11.733 2 0 Median 1.2403 1.0789 3.5707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11764000 5661100 6102600 10382000 5073200 5309000 1381500 587920 793620 0 0 0 0 0 0 0 0 0 0 0 0 29692 1969 31221 155045;155046;155047;155048 155898;155899;155900 155898 3 SEGQGIWALLGR CESLEELQNLNGKLRSEGQGIWALLGRITG KLRSEGQGIWALLGRITGQKLNIPAILRAP R S E G R I 1 1 0 0 0 1 1 3 0 1 2 0 0 0 0 1 0 1 0 0 0 0 12 0 1285.6779 B4DG57;A0A0U1RRH6;O94880 B4DG57 392 403 PHF14 PHD finger protein 14 yes no 2 0.0027767 47.823 By matching By MS/MS By matching 1 1 3 1.2643 1.083 6.7849 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2643 1.1278 NaN 1 0 Median 0.99659 1.0534 NaN 1 0 Median 1.275 1.083 8.7088 3 0 Median 4409000 2126100 2282900 0 0 0 0 0 0 0 0 0 55967 28510 27457 3289300 1624100 1665200 1063700 473490 590210 29693 309 31222 155049;155050;155051;155052;155053 155901;155902 155902 2 SEGVVAVLLTK GTCKAFDTAGNGYCRSEGVVAVLLTKKSLA GYCRSEGVVAVLLTKKSLARRVYATILNAG R S E T K K 1 0 0 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 11 0 1114.6598 P49327;A0A0U1RQF0 P49327 225 235 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0031943 50.292 By MS/MS By MS/MS By matching By matching 1 3 1 2 1.3229 1.1706 12.229 7 Median 0.92432 0.88836 NaN 1 0 Median 1.3475 1.193 1.8108 3 0 Median 0.87019 0.96535 NaN 1 0 Median 1.2838 1.1315 7.4694 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52801000 24462000 28339000 24297000 12642000 11655000 26856000 10978000 15879000 1250800 679970 570870 397310 162400 234910 0 0 0 0 0 0 29694 2377 31223 155054;155055;155056;155057;155058;155059;155060 155903;155904;155905 155904 3 SEGVVAVLLTKK GTCKAFDTAGNGYCRSEGVVAVLLTKKSLA YCRSEGVVAVLLTKKSLARRVYATILNAGT R S E K K S 1 0 0 0 0 0 1 1 0 0 2 2 0 0 0 1 1 0 0 3 0 0 12 1 1242.7547 P49327;A0A0U1RQF0 P49327 225 236 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00085928 69.979 By MS/MS By matching 1 1 1.2998 1.2625 0.20413 2 Median 1.3092 1.2643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2905 1.2607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11145000 4611000 6533700 11020000 4557000 6462600 0 0 0 0 0 0 125050 54025 71028 0 0 0 0 0 0 29695 2377 31224 155061;155062 155906 155906 1 SEGYFGMYR RVYTSMSDCLIKTVRSEGYFGMYRGAAVNL LIKTVRSEGYFGMYRGAAVNLTLVTPEKAI R S E Y R G 0 1 0 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 2 0 0 0 9 0 1108.4648 Q9H936;E9PJH7;A0A0D9SFE1;A0A0D9SEI9;K4DIA8;K4DIB8;K4DIB3;K4DIB6;E9PQ36;E9PI74;A0A0D9SG84;K4DIA2;K4DIB0;A0A0D9SFA8;A0A0A6YYN8;E9PJY0 Q9H936 59 67 SLC25A22 Mitochondrial glutamate carrier 1 yes no 2 0.0016555 79.116 By MS/MS By matching By matching By matching 1 1 1 1 1.1775 1.0457 26.239 4 Median 1.0193 0.95415 NaN 1 0 Median 1.3602 1.146 NaN 1 0 Median 1.4338 1.3748 NaN 1 0 Median 0.79711 0.74385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15501000 7189900 8310900 12558000 6035400 6522300 1930200 680760 1249500 900080 426170 473910 112740 47515 65226 0 0 0 0 0 0 29696 943 31225 155063;155064;155065;155066 155907 155907 1 SEHKVWSPLVTEEGKR RIKGCTDNLTLTVARSEHKVWSPLVTEEGK EHKVWSPLVTEEGKRHPYKMNLASEPQEVL R S E K R H 0 1 0 0 0 0 3 1 1 0 1 2 0 0 1 2 1 1 0 2 0 0 16 2 1880.9745 O00151 O00151 84 99 PDLIM1 PDZ and LIM domain protein 1 yes yes 4 0.00019126 44.294 By MS/MS 1 1.0944 1.1588 NaN 1 Median 1.0944 1.1588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044900 1223100 1821800 3044900 1223100 1821800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29697 1442 31226 155067 155908 155908 1 SEHPGLSIGDTAK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ K S E A K K 1 0 0 1 0 0 1 2 1 1 1 1 0 0 1 2 1 0 0 0 0 0 13 0 1310.6466 P26583;D6R9A6 P26583 115 127 HMGB2 High mobility group protein B2 yes no 2;3 3.992E-07 154.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 5 2 4 0.96114 0.87338 21.322 20 Median 0.89055 0.86429 38.967 4 0 Median 1.0021 0.85206 5.9691 2 0 Median 0.8568 0.8046 2.9348 3 0 Plateau 1.0699 0.89038 4.7931 5 0 Median 0.90202 0.9183 9.7389 2 0 Median 0.8884 0.73367 25.535 4 0 Median 514080000 260730000 253350000 38598000 21351000 17247000 3595900 1771600 1824300 345730000 176960000 168770000 93991000 43748000 50243000 16414000 9040700 7373000 15753000 7856400 7896800 29698 2146 31227 155068;155069;155070;155071;155072;155073;155074;155075;155076;155077;155078;155079;155080;155081;155082;155083;155084;155085;155086;155087 155909;155910;155911;155912;155913;155914;155915;155916;155917;155918;155919;155920;155921;155922;155923;155924;155925;155926;155927;155928;155929;155930;155931;155932;155933;155934;155935;155936;155937;155938;155939;155940;155941;155942;155943;155944 155934 35 SEHPGLSIGDTAKK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP K S E K K L 1 0 0 1 0 0 1 2 1 1 1 2 0 0 1 2 1 0 0 0 0 0 14 1 1438.7416 P26583;D6R9A6 P26583 115 128 HMGB2 High mobility group protein B2 yes no 2;3 7.2132E-05 73.91 By matching By MS/MS By MS/MS By MS/MS 1 2 3 1 0.94613 0.93426 11.327 7 Median 0.74687 0.72448 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90015 0.89579 2.6439 2 0 Median 1.0583 0.95259 4.672 3 0 Median 0.94613 0.99399 NaN 1 0 Median NaN NaN NaN 0 0 Median 48573000 24093000 24480000 458610 214720 243890 0 0 0 33467000 17072000 16395000 13617000 6359300 7257900 1029800 447070 582740 0 0 0 29699 2146 31228 155088;155089;155090;155091;155092;155093;155094 155945;155946;155947;155948;155949;155950;155951;155952;155953;155954 155946 10 SEHQKLEENIDNIKR QHLKEMGQMQVLQMKSEHQKLEENIDNIKR SEHQKLEENIDNIKRNHNLALGRQKGYEEE K S E K R N 0 1 2 1 0 1 3 0 1 2 1 2 0 0 0 1 0 0 0 0 0 0 15 2 1851.9439 Q92878;A0A1W2PQ90 Q92878 1055 1069 RAD50 DNA repair protein RAD50 yes no 3;4 3.4328E-10 106.52 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 0.98415 1.1544 15.262 6 Median 0.76698 0.81075 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0124 1.1536 7.3033 2 0 Median 1.0726 1.2006 NaN 1 0 Median 0.98197 1.1544 3.617 2 1 Median NaN NaN NaN 0 0 Median 49223000 24507000 24716000 6927900 3662900 3265000 0 0 0 34982000 17607000 17376000 779910 375030 404880 6533000 2862000 3671000 0 0 0 29700 3561 31229 155095;155096;155097;155098;155099;155100 155955;155956;155957;155958;155959;155960;155961 155960 7 SEHTAPPPEEPTDKSPEAEDPLGVER GKTYRSKAGHDYHVRSEHTAPPPEEPTDKS TDKSPEAEDPLGVERTPSGRVRRTSAQVAV R S E E R T 2 1 0 2 0 0 6 1 1 0 1 1 0 0 6 2 2 0 0 1 0 0 26 1 2813.2992 Q96KM6 Q96KM6 651 676 ZNF512B Zinc finger protein 512B yes yes 4 6.0642E-09 47.796 By MS/MS 1 0.25314 0.28728 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25314 0.28728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5967600 4454000 1513600 0 0 0 0 0 0 5967600 4454000 1513600 0 0 0 0 0 0 0 0 0 29701 3694 31230 155101 155962 155962 1 SEHTQTVSQLTSQNEVLR REKLCSIQSENMMMKSEHTQTVSQLTSQNE TQTVSQLTSQNEVLRNSFRDQVRHLQEEHR K S E L R N 0 1 1 0 0 3 2 0 1 0 2 0 0 0 0 3 3 0 0 2 0 0 18 0 2056.0185 Q8IWJ2 Q8IWJ2 1423 1440 GCC2 GRIP and coiled-coil domain-containing protein 2 yes yes 3 1.0178E-13 152.94 By MS/MS By MS/MS 1 1 1.0277 0.92034 11.154 2 Median 0.90618 0.85054 NaN 1 0 Median 1.1655 0.99586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18802000 8938300 9863300 12996000 6310000 6686300 5805200 2628300 3176900 0 0 0 0 0 0 0 0 0 0 0 0 29702 3326 31231 155102;155103 155963;155964 155963 2 SEIDLFNIR AGTDDHTLIRVMVSRSEIDLFNIRKEFRKN RVMVSRSEIDLFNIRKEFRKNFATSLYSMI R S E I R K 0 1 1 1 0 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1105.5768 P08758;D6RBL5;D6RBE9 P08758 277 285 ANXA5 Annexin A5;Annexin yes no 2 0.00060862 109.86 By MS/MS By matching By MS/MS By MS/MS 3 1 1 1 1.0812 1.0396 18.749 6 Median 1.1009 1.0281 26.513 3 0 Plateau 1.028 0.91143 NaN 1 0 Median 1.0904 1.0696 NaN 1 0 Median 1.253 1.0512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67980000 31000000 36980000 58696000 26646000 32050000 462430 237490 224940 8127800 3811500 4316300 693210 305060 388150 0 0 0 0 0 0 29703 1909 31232 155104;155105;155106;155107;155108;155109 155965;155966;155967;155968;155969;155970;155971 155966 7 SEIDLFNIRK AGTDDHTLIRVMVSRSEIDLFNIRKEFRKN VMVSRSEIDLFNIRKEFRKNFATSLYSMIK R S E R K E 0 1 1 1 0 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1233.6717 P08758;D6RBL5;D6RBE9 P08758 277 286 ANXA5 Annexin A5;Annexin yes no 2;3 0.00011101 131.06 By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 1.1933 1.1205 19.853 10 Median 1.0969 1.1075 11.099 4 0 Median 1.2726 1.1266 11.785 3 0 Median 1.8262 2.0053 NaN 1 0 Median 1.1709 1.105 1.9679 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 347700000 153300000 194400000 298080000 132530000 165550000 46891000 19708000 27183000 1771600 604730 1166900 962740 461850 500900 0 0 0 0 0 0 29704 1909 31233 155110;155111;155112;155113;155114;155115;155116;155117;155118;155119 155972;155973;155974;155975;155976;155977;155978;155979;155980;155981;155982;155983 155974 12 SEIDLLNIR AGTDEKTLTRIMVSRSEIDLLNIRREFIEK RIMVSRSEIDLLNIRREFIEKYDKSLHQAI R S E I R R 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1071.5924 E5RK69;E5RFF0;H0YC77;P08133;E7EMC6 P08133 630 638 ANXA6 Annexin;Annexin A6 no no 2 0.0096066 65.252 By MS/MS By MS/MS 1 2 1.3593 1.1792 1.0054 3 Plateau NaN NaN NaN 0 0 Median 1.3595 1.1792 NaN 1 0 Median 1.1025 1.1668 1.1306 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9287700 4289700 4998000 0 0 0 2558300 1057000 1501300 6729400 3232700 3496700 0 0 0 0 0 0 0 0 0 29705 1898;854 31234 155120;155121;155122 155984;155985;155986 155985 3 SEIDLLNIRR AGTDEKTLTRIMVSRSEIDLLNIRREFIEK IMVSRSEIDLLNIRREFIEKYDKSLHQAIE R S E R R E 0 2 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 1 1227.6935 E5RK69;E5RFF0;H0YC77;P08133;E7EMC6 P08133 630 639 ANXA6 Annexin;Annexin A6 no no 2;3 0.00031863 66.435 By MS/MS By matching By matching 4 1 1 0.97234 0.97726 74.861 6 Median 1.4515 0.97726 82.909 4 0 Linear 0.44069 0.38867 NaN 1 0 Median 1.1736 1.3096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34297000 16592000 17705000 31723000 15389000 16333000 775400 485000 290400 1798400 717520 1080900 0 0 0 0 0 0 0 0 0 29706 1898;854 31235 155123;155124;155125;155126;155127;155128 155987;155988;155989;155990;155991 155987 5 SEIDLVQIK AGTDDSTLVRIVVTRSEIDLVQIKQMFAQM RIVVTRSEIDLVQIKQMFAQMYQKTLGTMI R S E I K Q 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1043.5863 P20073 P20073 447 455 ANXA7 Annexin A7 yes yes 2 0.028308 50.607 By MS/MS 1 1.0951 0.98345 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0951 0.98345 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7751500 3610900 4140500 0 0 0 0 0 0 0 0 0 7751500 3610900 4140500 0 0 0 0 0 0 29707 2073 31236 155129 155992 155992 1 SEIDMNDIK VGTRHKALIRIMVSRSEIDMNDIKAFYQKM RIMVSRSEIDMNDIKAFYQKMYGISLCQAI R S E I K A 0 0 1 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 0 0 0 9 0 1063.4856 P04083 P04083 304 312 ANXA1 Annexin A1 yes yes 2 0.0024827 71.692 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.127 0.95492 14.57 5 Median 1.3349 1.2287 NaN 1 0 Median 1.1242 0.95067 0.63009 2 0 Median 1.2901 1.2416 NaN 1 0 Median 1.1082 0.93954 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101440000 46340000 55100000 34291000 14791000 19500000 51135000 24123000 27012000 12077000 5237600 6839700 3936000 2187600 1748400 0 0 0 0 0 0 29708 1844 31237 155130;155131;155132;155133;155134 155993;155994;155995;155996;155997;155998;155999;156000 155994 8 SEIEYYAMLAK AKLVILANNCPALRKSEIEYYAMLAKTGVH ALRKSEIEYYAMLAKTGVHHYSGNNIELGT K S E A K T 2 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 2 0 0 0 11 0 1316.6322 E5RI99;P62888 E5RI99 58 68 RPL30 60S ribosomal protein L30 yes no 2 0.0004849 78.934 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 2 2 2 1.2254 1.1331 75.415 10 Median 1.0216 0.9656 131.96 3 1 Median 1.3206 1.1526 NaN 1 0 Median 1.4555 1.3918 20.11 2 0 Median 1.3436 1.1139 NaN 1 0 Median 1.1544 1.2436 NaN 1 0 Median 1.1803 0.95462 3.7154 2 0 Median 130170000 81152000 49020000 84323000 64454000 19868000 700040 258230 441810 27458000 8975000 18483000 462840 211700 251130 5270600 1930100 3340500 11959000 5322800 6636000 29709 849 31238;31239 155135;155136;155137;155138;155139;155140;155141;155142;155143;155144;155145;155146;155147 156001;156002;156003;156004;156005;156006;156007;156008 156003 307 8 SEIGEKQDTELQEK EKSLESHRAKVVTQRSEIGEKQDTELQEKE RSEIGEKQDTELQEKETPTQVYQKDKQDAD R S E E K E 0 0 0 1 0 2 4 1 0 1 1 2 0 0 0 1 1 0 0 0 0 0 14 1 1632.7843 Q5SW79;H0Y2V6 Q5SW79 667 680 CEP170 Centrosomal protein of 170 kDa yes no 3 0.069935 11.474 By MS/MS By matching By matching 1 1 1 1.0369 1.1715 22.611 3 Median 1.0369 1.0625 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0277 1.1715 NaN 1 0 Median 1.7575 1.6354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2964200 1223300 1740900 1700600 663730 1036900 0 0 0 872930 382740 490190 390670 176840 213830 0 0 0 0 0 0 29710 3076 31240 155148;155149;155150 156009 156009 1 SEIIPMFSNLASDEQDSVR KLGEFAKVLELDNVKSEIIPMFSNLASDEQ PMFSNLASDEQDSVRLLAVEACVNIAQLLP K S E V R L 1 1 1 2 0 1 2 0 0 2 1 0 1 1 1 4 0 0 0 1 0 0 19 0 2136.9997 P30153;B3KQV6;C9J9C1 P30153 203 221 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2;3 8.2561E-13 98.531 By MS/MS By matching By MS/MS By matching By matching 2 3 2 1 1 0.93424 0.94485 10.753 9 Median 0.92414 0.90444 14.397 2 0 Median 0.95671 0.84127 13.651 3 0 Median 0.91063 0.94491 0.0093824 2 0 Median 0.93424 0.82554 NaN 1 0 Median 1.0477 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median 30435000 16213000 14223000 23552000 12659000 10894000 1312500 661990 650510 4852200 2573200 2279000 95002 54970 40032 623340 263890 359450 0 0 0 29711 2190 31241 155151;155152;155153;155154;155155;155156;155157;155158;155159 156010;156011;156012;156013;156014;156015;156016 156012 7 SEIKGFYDPPRR ERIGHRYIEIFRSSRSEIKGFYDPPRRLLG SSRSEIKGFYDPPRRLLGQRPGPYDRPIGG R S E R R L 0 2 0 1 0 0 1 1 0 1 0 1 0 1 2 1 0 0 1 0 0 0 12 2 1463.7521 P31942 P31942 94 105 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3 0.032353 21.759 By MS/MS 1 0.66802 0.76203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66802 0.76203 NaN 1 0 Median NaN NaN NaN 0 0 Median 20008000 11178000 8829900 0 0 0 0 0 0 0 0 0 0 0 0 20008000 11178000 8829900 0 0 0 29712 2208 31242 155160 156017;156018 156017 2 SEIQAEQDR RAFDSAVAKALEHHRSEIQAEQDRKIEEVR ALEHHRSEIQAEQDRKIEEVRDAMENEMRT R S E D R K 1 1 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1074.4942 Q16891;B9A067;C9J406;H7C463 Q16891 458 466 IMMT MICOS complex subunit MIC60 yes no 2 0.06063 28.174 By MS/MS 1 1.2032 1.0621 NaN 1 Median NaN NaN NaN 0 0 Median 1.2032 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1327800 557650 770180 0 0 0 1327800 557650 770180 0 0 0 0 0 0 0 0 0 0 0 0 29713 3001 31243 155161 156019 156019 1 SEISELR NREVATNSELVQSGKSEISELRRTMQALEI SELVQSGKSEISELRRTMQALEIELQSQLS K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 7 0 832.42905 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8 CON__Q04695 298 304 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 0.014432 74.415 By matching By MS/MS By MS/MS By matching By matching 1 1 4 1 1 0.60727 0.54025 57.979 6 Median NaN NaN NaN 0 0 Median 1.2403 1.0831 NaN 1 0 Median 1.3081 1.3188 NaN 1 0 Median 0.42395 0.36346 43.551 2 0 Median 0.51836 0.52286 NaN 1 0 Median 0.64869 0.55823 NaN 1 0 Median 12541000 7756700 4784200 0 0 0 1154900 453970 700960 2418000 1061600 1356300 4226700 3134800 1091900 2780200 1937000 843150 1961100 1169300 791840 + 29714 768;739 31244 155162;155163;155164;155165;155166;155167;155168;155169 156020;156021;156022 156020 3 SEISELRR NREVATNSELVQSGKSEISELRRTMQALEI ELVQSGKSEISELRRTMQALEIELQSQLSM K S E R R T 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 8 1 988.53016 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8 CON__Q04695 298 305 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 2.1926E-06 148.38 By matching By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 3 3 4 5 0.47532 0.41934 70.296 18 Median 0.60877 0.61476 NaN 1 0 Median 0.66038 0.60603 11.338 2 0 Median 1.0833 1.1701 128.08 3 0 Plateau 0.61801 0.57646 54.983 3 1 Plateau 0.27129 0.29188 101.34 4 1 Median 0.63021 0.54039 25.411 5 0 Plateau 118930000 76258000 42670000 5831500 3594500 2237000 5124100 3174500 1949600 12194000 6847300 5346500 16485000 10911000 5573900 61490000 40562000 20928000 17804000 11169000 6635000 + 29715 768;739 31245 155170;155171;155172;155173;155174;155175;155176;155177;155178;155179;155180;155181;155182;155183;155184;155185;155186;155187 156023;156024;156025;156026;156027;156028;156029;156030 156023 8 SEISENTDASGK KMENCLGESRHEVEKSEISENTDASGKIEK VEKSEISENTDASGKIEKYNVPLNRLKMMF K S E G K I 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 3 1 0 0 0 0 0 12 0 1236.547 Q9UHB6;F8VQE1;F8VRN8 Q9UHB6 175 186 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0031404 46.891 By MS/MS By matching By matching 1 1 1 1.0147 0.93028 9.154 3 Median NaN NaN NaN 0 0 Median 1.0147 0.90652 NaN 1 0 Median 0.87603 0.93028 NaN 1 0 Median 1.2189 1.0744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3371800 1785900 1585900 0 0 0 557980 286700 271280 2477800 1333200 1144600 336000 166030 169960 0 0 0 0 0 0 29716 4273 31246 155188;155189;155190 156031;156032 156032 2 SEISGDLAR TFKSHFGRDLMTDLKSEISGDLARLILGLM LMTDLKSEISGDLARLILGLMMPPAHYDAK K S E A R L 1 1 0 1 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 0 0 0 9 0 946.47197 E5RK69;P08133;E7EMC6 P08133 419 427 ANXA6 Annexin;Annexin A6 no no 2 0.00098836 86.794 By MS/MS By MS/MS 2 2 1.1656 1.0669 16.123 4 Median 0.98746 0.96858 4.8346 2 0 Median 1.4092 1.2388 12.29 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32315000 14177000 18138000 6847900 3282000 3565800 25467000 10895000 14572000 0 0 0 0 0 0 0 0 0 0 0 0 29717 1898;854 31247 155191;155192;155193;155194 156033;156034;156035;156036;156037;156038 156038 6 SEISLLPSDIDR YEMGYKSRSEQLTDRSEISLLPSDIDRYKK TDRSEISLLPSDIDRYKKRFHKFDADQKGF R S E D R Y 0 1 0 2 0 0 1 0 0 2 2 0 0 0 1 3 0 0 0 0 0 0 12 0 1343.6933 P43304 P43304 616 627 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.00020872 101.11 By MS/MS 1 0.83928 0.83066 NaN 1 Median 0.83928 0.83066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1892000 963910 928080 1892000 963910 928080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29718 2325 31248 155195 156039 156039 1 SEITELR TTEIDNNIEQISSYKSEITELRRNVQALEI IEQISSYKSEITELRRNVQALEIELQSQLA K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 846.4447 P13645;CON__P13645;CON__P02535-1 P13645 363 369 KRT10 Keratin, type I cytoskeletal 10 no no 2 7.2678E-51 191.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 5 11 1 2 0.10184 0.092533 153.53 26 Median 0.59975 0.59458 29.972 3 2 Plateau 0.19877 0.17222 155.94 5 3 Median 0.19543 0.20657 148.5 4 3 Median 0.061059 0.052531 132.06 11 11 Median 0.19575 0.2004 NaN 1 1 Median 0.07164 0.057538 217.51 2 2 Median 194260000 150470000 43781000 9850500 5943300 3907200 56138000 37675000 18464000 30270000 20980000 9289300 59100000 54283000 4816200 15777000 11343000 4434300 23121000 20251000 2870800 + 29719 756;740 31249 155196;155197;155198;155199;155200;155201;155202;155203;155204;155205;155206;155207;155208;155209;155210;155211;155212;155213;155214;155215;155216;155217;155218;155219;155220;155221;155222;155223 156040;156041;156042;156043;156044;156045;156046;156047;156048;156049;156050;156051;156052;156053;156054;156055;156056;156057;156058;156059;156060;156061;156062;156063;156064 156064 25 SEITELRR TTEIDNNIEQISSYKSEITELRRNVQALEI EQISSYKSEITELRRNVQALEIELQSQLAL K S E R R N 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 1 1002.5458 P13645;CON__P13645;CON__P02535-1 P13645 363 370 KRT10 Keratin, type I cytoskeletal 10 no no 2 1.7229E-13 150.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 7 8 5 3 0.01224 0.013415 88.444 28 Median 0.02483 0.024956 86.834 4 4 Median 0.024597 0.0231 109.02 6 6 Median 0.010598 0.012252 48.31 4 4 Median 0.0091142 0.0089227 38.496 7 7 Median 0.008325 0.0090024 47.887 4 4 Median 0.017332 0.015323 78.805 3 3 Median 824100000 815480000 8616900 31201000 30437000 763960 79976000 76537000 3438500 117380000 116740000 640520 206100000 204730000 1368600 267860000 266400000 1463700 121570000 120630000 941580 + 29720 756;740 31250 155224;155225;155226;155227;155228;155229;155230;155231;155232;155233;155234;155235;155236;155237;155238;155239;155240;155241;155242;155243;155244;155245;155246;155247;155248;155249;155250;155251;155252;155253;155254;155255;155256;155257 156065;156066;156067;156068;156069;156070;156071;156072;156073;156074;156075;156076;156077;156078;156079;156080;156081;156082;156083;156084;156085;156086;156087;156088;156089;156090;156091;156092;156093;156094;156095;156096;156097;156098;156099;156100 156094 36 SEIVGSIK ESVNLLVSANGNVLRSEIVGSIKMRVFLSG ANGNVLRSEIVGSIKMRVFLSGMPELRLGL R S E I K M 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 2 0 0 0 1 0 0 8 0 831.47018 E7ENJ6;Q9BXS5;K7EJL1 E7ENJ6 192 199 AP1M1 AP-1 complex subunit mu-1 yes no 2 0.020415 46.426 By matching By MS/MS By MS/MS 1 1 1 1.2824 1.173 16.105 3 Plateau 0.97462 0.95957 NaN 1 0 Median 1.2098 1.0489 NaN 1 0 Median 1.2908 1.3117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3919200 1906700 2012400 887200 437840 449360 1434700 664860 769810 1597300 804020 793260 0 0 0 0 0 0 0 0 0 29721 864 31251 155258;155259;155260 156101;156102 156102 2 SEKEMDPEYEEK NVSSFQLKLAAKAPKSEKEMDPEYEEKMKA APKSEKEMDPEYEEKMKADRAKRFEFLLKQ K S E E K M 0 0 0 1 0 0 5 0 0 0 0 2 1 0 1 1 0 0 1 0 0 0 12 1 1512.629 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 75 86 SMARCA1 Probable global transcription activator SNF2L1 no no 3 0.04996 17.135 By MS/MS By matching 1 1 0.7064 0.79893 1.1274 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69292 0.79258 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72013 0.80532 NaN 1 0 Median NaN NaN NaN 0 0 Median 2278200 1266900 1011300 0 0 0 0 0 0 1369700 727390 642340 0 0 0 908500 539550 368950 0 0 0 29722 167;643 31252 155261;155262 156103;156104 156103 2 SEKENLTNELQK TQSLRGLELDVVTIRSEKENLTNELQKEQE TIRSEKENLTNELQKEQERISELEIINSSF R S E Q K E 0 0 2 0 0 1 3 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 12 1 1431.7205 P49454 P49454 2392 2403 CENPF Centromere protein F yes yes 3 0.063015 14.243 By matching By MS/MS 1 1 0.85204 0.91566 26.269 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66894 0.76044 NaN 1 0 Median 1.0853 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2948600 1629500 1319100 0 0 0 0 0 0 1863600 1078900 784730 1085000 550650 534360 0 0 0 0 0 0 29723 2383 31253 155263;155264 156105 156105 1 SEKGVIQVYDLGQDGQGMSR LQIAIDNSRNILYTRSEKGVIQVYDLGQDG IQVYDLGQDGQGMSRVASVSQNAIVSAAGN R S E S R V 0 1 0 2 0 3 1 4 0 1 1 1 1 0 0 2 0 0 1 2 0 0 20 1 2166.0375 O75694;E9PF10 O75694 295 314 NUP155 Nuclear pore complex protein Nup155 yes no 3 3.697E-20 106.03 By MS/MS 1 0.89251 1.0115 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89251 1.0115 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10763000 5496300 5266900 0 0 0 0 0 0 10763000 5496300 5266900 0 0 0 0 0 0 0 0 0 29724 1692 31254 155265 156106 156106 1 SEKPLENGTGFQAQDISGQK GFKFGISEPGNQEKKSEKPLENGTGFQAQD ENGTGFQAQDISGQKNGRGVIFGQTSSTFT K S E Q K N 1 0 1 1 0 3 2 3 0 1 1 2 0 1 1 2 1 0 0 0 0 0 20 1 2133.0338 P49792 P49792 1912 1931 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.011086 29.136 By MS/MS By MS/MS 1 3 0.89511 0.89487 12.867 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79392 0.90157 NaN 1 1 Median 0.91643 0.88822 15.751 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8683500 4366400 4317000 0 0 0 0 0 0 4791800 2449900 2342000 3891600 1916600 1975100 0 0 0 0 0 0 29725 2401 31255 155266;155267;155268;155269 156107;156108 156107 2 SEKPNWDYHAEIQAFGHR ERQRLLRCPPPPVRRSEKPNWDYHAEIQAF PNWDYHAEIQAFGHRLQENFSLDLLKTAFV R S E H R L 2 1 1 1 0 1 2 1 2 1 0 1 0 1 1 1 0 1 1 0 0 0 18 1 2184.0137 Q9H9J2 Q9H9J2 61 78 MRPL44 39S ribosomal protein L44, mitochondrial yes yes 4 0.014317 20.65 By MS/MS 1 1.0294 1.1245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0294 1.1245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2597200 831170 1766000 0 0 0 0 0 0 2597200 831170 1766000 0 0 0 0 0 0 0 0 0 29726 4000 31256 155270 156109 156109 1 SELDMLDIR LGTRDNTLIRIMVSRSELDMLDIREIFRTK RIMVSRSELDMLDIREIFRTKYEKSLYSMI R S E I R E 0 1 0 2 0 0 1 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 9 0 1090.5329 P08133 P08133 282 290 ANXA6 Annexin A6 yes yes 2 0.0028118 69.423 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1774 1.1222 13.899 4 Median 0.9969 0.94497 NaN 1 0 Median 1.2926 1.1173 NaN 1 0 Median 1.0725 1.1271 NaN 1 0 Median 1.5348 1.3281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32955000 15299000 17656000 13923000 6905700 7017000 17517000 7756800 9760400 1336400 570270 766120 178390 66328 112070 0 0 0 0 0 0 29727 1898 31257 155271;155272;155273;155274 156110;156111;156112;156113 156110 4 SELDQLRQEAEQLK ______________________________ MSELDQLRQEAEQLKNQIRDARKACADATL M S E L K N 1 1 0 1 0 3 3 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 14 1 1685.8584 P62873;F6UT28;B1AKQ8;F6X3N5 P62873 2 15 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes no 2 0.00047569 51.927 By MS/MS By matching By matching 1 1 1 1.2851 1.5231 11.724 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4049 1.5271 NaN 1 0 Median 1.2851 1.2127 NaN 1 0 Median 1.2211 1.3112 NaN 1 0 Median NaN NaN NaN 0 0 Median 8020200 3081100 4939100 0 0 0 0 0 0 6843300 2536900 4306400 260110 123690 136420 916820 420470 496350 0 0 0 29728 2603 31258 155275;155276;155277 156114 156114 1 SELDVPVEILNITEK RVVSNDDGSISYESRSELDVPVEILNITEK SELDVPVEILNITEKQRFMDGDKNIAIISE R S E E K Q 0 0 1 1 0 0 3 0 0 2 2 1 0 0 1 1 1 0 0 2 0 0 15 0 1697.9087 A3KN83 A3KN83 911 925 SBNO1 Protein strawberry notch homolog 1 yes yes 2 0.048326 34.378 By MS/MS 1 0.88945 0.88048 NaN 1 Median 0.88945 0.88048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1523100 677000 846060 1523100 677000 846060 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29729 501 31259 155278 156115 156115 1 SELEDFELDK DLDDILESITNRMIKSELEDFELDKSADFS NRMIKSELEDFELDKSADFSQSTSIGIKNN K S E D K S 0 0 0 2 0 0 3 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1223.5558 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 716 725 FANCI Fanconi anemia group I protein yes no 2 0.021615 36.693 By MS/MS By matching 1 1 1.0769 1.0369 12.378 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87953 0.95001 NaN 1 0 Median 1.3185 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2738100 1357600 1380500 0 0 0 0 0 0 2457300 1226400 1230900 280780 131220 149560 0 0 0 0 0 0 29730 4132 31260 155279;155280 156116 156116 1 SELEEQQMHLNVGLR LDFINHYANLFHEKRSELEEQQMHLNVGLR SELEEQQMHLNVGLRKIKETVDQVEELRRD R S E L R K 0 1 1 0 0 2 3 1 1 0 3 0 1 0 0 1 0 0 0 1 0 0 15 0 1781.873 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3192 3206 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 2.7723E-10 116.23 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1.1601 1.0237 11.876 5 Median 1.0918 1.0719 6.5134 2 2 Median 1.17 0.94073 NaN 1 1 Median 1.1655 1.2807 NaN 1 0 Median 1.1601 1.0104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60592000 27036000 33556000 39890000 17727000 22163000 14418000 6159200 8258600 2937700 1588900 1348800 3346800 1560500 1786400 0 0 0 0 0 0 29731 2865 31261;31262 155281;155282;155283;155284;155285;155286 156117;156118;156119;156120;156121;156122 156118 1559 6 SELEEQQMHLNVGLRK LDFINHYANLFHEKRSELEEQQMHLNVGLR ELEEQQMHLNVGLRKIKETVDQVEELRRDL R S E R K I 0 1 1 0 0 2 3 1 1 0 3 1 1 0 0 1 0 0 0 1 0 0 16 1 1909.968 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3192 3207 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3;4 2.4744E-05 65.092 By MS/MS By MS/MS 3 2 1.1634 1.3472 12.37 5 Median 1.4988 1.6577 16.722 3 1 Plateau NaN NaN NaN 0 0 Median 1.1334 1.3135 3.5901 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80628000 35691000 44937000 62360000 28359000 34001000 0 0 0 18268000 7331900 10936000 0 0 0 0 0 0 0 0 0 29732 2865 31263 155287;155288;155289;155290;155291 156123;156124;156125;156126 156123 3 SELELTLGK VLALPEPSPAAPTLRSELELTLGKLEQVRS AAPTLRSELELTLGKLEQVRSLSAIYLEKL R S E G K L 0 0 0 0 0 0 2 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 9 0 988.54408 Q15149;H0YDN1 Q15149 1202 1210 PLEC Plectin yes no 2 0.0035525 81.296 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.217 1.1376 26.556 6 Median 1.1066 1.1098 NaN 1 1 Median 1.019 0.89779 49.69 2 1 Median 1.0066 1.0779 NaN 1 1 Median 1.3384 1.2919 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3606 1.166 NaN 1 0 Median 52590000 22843000 29747000 14744000 7103800 7640400 25228000 10146000 15082000 8355500 3926400 4429100 2458400 973900 1484500 0 0 0 1804400 693190 1111200 29733 2933 31264 155292;155293;155294;155295;155296;155297 156127;156128;156129;156130;156131;156132 156127 6 SELELTLGKLEQVR VLALPEPSPAAPTLRSELELTLGKLEQVRS RSELELTLGKLEQVRSLSAIYLEKLKTISL R S E V R S 0 1 0 0 0 1 3 1 0 0 4 1 0 0 0 1 1 0 0 1 0 0 14 1 1613.8988 Q15149;H0YDN1 Q15149 1202 1215 PLEC Plectin yes no 2;3 5.2896E-05 149.96 By MS/MS By matching By matching 2 2 2 1.0582 1.033 35.239 6 Median 1.3327 1.3866 1.2772 2 0 Median 0.83614 0.74566 5.7456 2 0 Median 0.95196 1.0424 48.142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30889000 13358000 17532000 26274000 11111000 15163000 2162200 1136800 1025300 2453100 1109700 1343400 0 0 0 0 0 0 0 0 0 29734 2933 31265 155298;155299;155300;155301;155302;155303 156133;156134;156135;156136 156136 4 SELFGETAR EGQELFYTPEMADPKSELFGETARSIESTL EMADPKSELFGETARSIESTLDDLFRNSDV K S E A R S 1 1 0 0 0 0 2 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1008.4876 A0A087X208;A0A494C0G5;A0A494C1I6;O00468 A0A087X208 1021 1029 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment yes no 2 0.030308 49.418 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 497430 0 497430 0 0 0 0 0 0 0 0 0 497430 0 497430 0 0 0 0 0 0 29735 126 31266 155304 156137 156137 1 SELHIENLNMEADPGQYR NGSESRFFVSSSQGRSELHIENLNMEADPG HIENLNMEADPGQYRCNGTSSKGSDQAIIT R S E Y R C 1 1 2 1 0 1 3 1 1 1 2 0 1 0 1 1 0 0 1 0 0 0 18 0 2114.9691 P35613;A0A087WUV8;A0A087X2B5 P35613 283 300 BSG Basigin yes no 3 5.0903E-07 82.707 By MS/MS By matching 3 1 1.2318 1.1442 23.767 4 Median 1.3196 1.3286 26.899 3 0 Median 1.1499 0.98537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24862000 10751000 14110000 22136000 9549800 12586000 2725400 1201500 1523900 0 0 0 0 0 0 0 0 0 0 0 0 29736 2249 31267 155305;155306;155307;155308 156138;156139;156140 156140 3 SELHLMDR GDIDHVKQTLEKVEKSELHLMDRDLLQIIF TLEKVEKSELHLMDRDLLQIIFSFSKAGYP K S E D R D 0 1 0 1 0 0 1 0 1 0 2 0 1 0 0 1 0 0 0 0 0 0 8 0 999.48076 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 296 303 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0044417 81.548 By matching By MS/MS 1 1 1.2547 1.1115 10.456 2 Median 1.0946 1.0323 NaN 1 0 Median 1.4383 1.1968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20867000 8829900 12038000 3376500 1482200 1894300 17491000 7347700 10143000 0 0 0 0 0 0 0 0 0 0 0 0 29737 2315 31268 155309;155310 156141 156141 1 SELIPYLVR IVDFLMENGSITSIRSELIPYLVRKQFSSA SITSIRSELIPYLVRKQFSSASSQQGQEEK R S E V R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 1 1 0 0 9 0 1088.623 H0Y580;Q9NR50 H0Y580 47 55 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 2 0.0059661 56.011 By MS/MS By MS/MS By matching 1 1 1 1.2006 1.0648 13.339 3 Median 1.0729 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.256 1.3239 NaN 1 0 Median 1.2006 1.039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6339600 2900900 3438700 3906800 1930100 1976700 0 0 0 1623000 605690 1017300 809790 365140 444650 0 0 0 0 0 0 29738 1150 31269 155311;155312;155313 156142;156143;156144 156143 3 SELIQLVAVTQK FLHNNYNYILKSLEKSELIQLVAVTQKTAE LEKSELIQLVAVTQKTAERSYREHIEQQIQ K S E Q K T 1 0 0 0 0 2 1 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1327.7711 A0A0A0MSB8;Q9UPT5;A0A0A0MRE1;B4DJ07 A0A0A0MSB8 563 574 EXOC7 Exocyst complex component 7 yes no 2 0.00063696 63.283 By MS/MS By matching By matching By matching 1 1 1 2 1.1634 1.1439 18.229 5 Median 1.1634 1.1439 NaN 1 0 Median 1.4197 1.2785 NaN 1 0 Median 0.90279 0.96009 NaN 1 0 Median 1.1237 0.99083 27.065 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6362100 3078400 3283700 2165400 1008000 1157500 884710 360670 524040 2925400 1541200 1384200 386530 168520 218010 0 0 0 0 0 0 29739 179 31270 155314;155315;155316;155317;155318 156145 156145 1 SELKDFFQSYGNVVELR SHQLFIGNLPHEVDKSELKDFFQSYGNVVE LKDFFQSYGNVVELRINSGGKLPNFGFVVF K S E L R I 0 1 1 1 0 1 2 1 0 0 2 1 0 2 0 2 0 0 1 2 0 0 17 1 2030.0109 Q13283 Q13283 354 370 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3 0.0010823 33.624 By MS/MS By MS/MS By matching 1 1 1 1.2417 1.3699 15.53 3 Plateau 1.1982 1.2101 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3828 1.5508 NaN 1 0 Median 1.2417 1.1652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13484000 5911000 7572800 2945200 1323300 1621900 0 0 0 10444000 4543100 5900500 95001 44570 50431 0 0 0 0 0 0 29740 2803 31271 155319;155320;155321 156146;156147;156148 156146 3 SELLLAEEPGFLEGEDGEDTAK VAEAEEEETSIKAARSELLLAEEPGFLEGE EPGFLEGEDGEDTAKICQADIVEAVDIASA R S E A K I 2 0 0 2 0 0 6 3 0 0 4 1 0 1 1 1 1 0 0 0 0 0 22 0 2348.0907 O15213;H0Y6G3 O15213 149 170 WDR46 WD repeat-containing protein 46 no no 2 0.03809 19.578 By MS/MS 1 0.98687 1.0122 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98687 1.0122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1091800 529730 562050 0 0 0 0 0 0 0 0 0 0 0 0 1091800 529730 562050 0 0 0 29741 1531 31272 155322 156149 156149 1 SELLNELMDSAK WKMLGLFRKHNKIPRSELLNELMDSAKVSN IPRSELLNELMDSAKVSNSPSQAIEVVELA R S E A K V 1 0 1 1 0 0 2 0 0 0 3 1 1 0 0 2 0 0 0 0 0 0 12 0 1348.6544 Q96EY7 Q96EY7 608 619 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.00029009 93.058 By MS/MS By MS/MS 1 2 1.3154 1.1074 17.484 3 Median 1.0911 1.0639 NaN 1 0 Median 1.4791 1.2743 19.857 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12826000 5001400 7824800 2801600 1222600 1579100 10025000 3778800 6245800 0 0 0 0 0 0 0 0 0 0 0 0 29742 3644 31273 155323;155324;155325 156150;156151;156152 156151 3 SELLPAGWNNNKDLYVLR FGLGVGDQPGPNDKKSELLPAGWNNNKDLY LPAGWNNNKDLYVLRYEYKDGSRKLLVKAI K S E L R Y 1 1 3 1 0 0 1 1 0 0 4 1 0 0 1 1 0 1 1 1 0 0 18 1 2101.0956 Q5QPM7;Q92530;Q5QPM9 Q5QPM7 51 68 PSMF1 Proteasome inhibitor PI31 subunit yes no 2;3 1.69E-12 109.35 By MS/MS By matching 2 2 1.0384 1.0266 11.867 4 Median 1.0274 1.0266 4.814 2 0 Median 1.2043 1.097 18.848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14904000 6878600 8025400 14521000 6690400 7830700 382780 188180 194600 0 0 0 0 0 0 0 0 0 0 0 0 29743 3069 31274 155326;155327;155328;155329 156153;156154;156155;156156 156153 4 SELLPTVR PKKNILLTIGSYKNKSELLPTVRLLESLGY IGSYKNKSELLPTVRLLESLGYSLYASLGT K S E V R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 8 0 913.52328 F8VPD4;P27708 F8VPD4 1263 1270 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0055542 75.109 By MS/MS By MS/MS By matching 2 2 1 0.96077 0.89766 24.272 5 Median 1.1219 1.0696 24.782 2 0 Median 0.9478 0.80585 22.511 2 0 Median 0.74487 0.73548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12006000 5555100 6451100 5096600 2278000 2818600 4369900 2243400 2126400 2539800 1033700 1506000 0 0 0 0 0 0 0 0 0 29744 1057 31275 155330;155331;155332;155333;155334 156157;156158;156159;156160;156161;156162 156158 6 SELLVEQGR LEKLNKESRLLNQEKSELLVEQGRLQLQAD LLNQEKSELLVEQGRLQLQADRHQEHIRAR K S E G R L 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1029.5455 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 344 352 RAD50 DNA repair protein RAD50 yes no 2 0.00089695 93.143 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1344 1.0358 28.84 4 Median NaN NaN NaN 0 0 Median 0.78496 0.65363 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.07 0.94186 NaN 1 0 Median 1.2026 1.2565 NaN 1 1 Median 1.3721 1.1392 NaN 1 0 Median 29941000 16969000 12972000 0 0 0 16282000 10942000 5339600 0 0 0 4738600 2265300 2473200 5151400 1942900 3208500 3768900 1818000 1950900 29745 3561 31276 155335;155336;155337;155338;155339 156163;156164;156165;156166;156167;156168 156166 6 SELPDYYLTIK RGRRLSAIFLRLPSRSELPDYYLTIKKPMD LPSRSELPDYYLTIKKPMDMEKIRSHMMAN R S E I K K 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 1 1 0 2 0 0 0 11 0 1340.6864 Q86U86;E7EVG2;H0Y5B5 Q86U86 691 701 PBRM1 Protein polybromo-1 yes no 2 0.00077434 62.823 By MS/MS By MS/MS 2 1 0.79295 0.86386 11.791 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78904 0.8612 0.43564 2 0 Median 1.1667 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33535000 17850000 15684000 0 0 0 0 0 0 31505000 16956000 14549000 2030200 894610 1135600 0 0 0 0 0 0 29746 3273 31277 155340;155341;155342 156169;156170;156171;156172;156173;156174 156172 6 SELPLDPLPVPTEEGNPLLK RTESRSTEPELIQVKSELPLDPLPVPTEEG DPLPVPTEEGNPLLKHYRGPAGDATVASEK K S E L K H 0 0 1 1 0 0 3 1 0 0 5 1 0 0 5 1 1 0 0 1 0 0 20 0 2157.1569 Q15758;M0QXM4 Q15758 503 522 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 3 0.014686 18.058 By MS/MS 2 0.33383 0.32557 78.536 2 Median 0.33383 0.32557 78.536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2372300 1846800 525500 2372300 1846800 525500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29747 2968 31278 155343;155344 156175 156175 1 SELSGNFEK SFKTAYGKDLIKDLKSELSGNFEKTILALM LIKDLKSELSGNFEKTILALMKTPVLFDIY K S E E K T 0 0 1 0 0 0 2 1 0 0 1 1 0 1 0 2 0 0 0 0 0 0 9 0 1009.4716 P50995;E5RIN3;P27216 P50995 256 264 ANXA11;ANXA13 Annexin A11;Annexin A13 yes no 2 0.0058853 56.258 By MS/MS By MS/MS By matching 1 1 1 1.3978 1.1898 16.711 3 Median 0.97945 0.93316 NaN 1 1 Median 1.3978 1.1898 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4887 1.2854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9581400 4253900 5327500 3544900 1841700 1703200 4953600 1979900 2973700 0 0 0 1082900 432260 650630 0 0 0 0 0 0 29748 2425 31279 155345;155346;155347 156176;156177;156178 156177 3 SELSQNISAR VESSVISLLQEAESKSELSQNISAREHFVF EAESKSELSQNISAREHFVFTDIDGQVYHL K S E A R E 1 1 1 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 10 0 1103.5571 Q9BZH6 Q9BZH6 667 676 WDR11 WD repeat-containing protein 11 yes yes 2 0.00041856 75.378 By MS/MS 1 0.93932 0.80504 NaN 1 Median NaN NaN NaN 0 0 Median 0.93932 0.80504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2043100 1003700 1039500 0 0 0 2043100 1003700 1039500 0 0 0 0 0 0 0 0 0 0 0 0 29749 3900 31280 155348 156179;156180 156179 2 SELVANNVTLPAGEQR EFLEDPSVLTKDKLKSELVANNVTLPAGEQ ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K S E Q R K 2 1 2 0 0 1 2 1 0 0 2 0 0 0 1 1 1 0 0 2 0 0 16 0 1696.8744 P42166;P42167;G5E972 P42166 18 33 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 1.6526E-102 270.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 7 8 4 3 0.90003 0.82445 15.983 23 Median 0.73871 0.73441 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8936 0.86466 15.114 7 0 Median 1.0575 0.88865 18.648 8 0 Median 0.73781 0.74183 9.9052 4 2 Median 1.005 0.86357 19.852 3 0 Median 651120000 348260000 302860000 3749800 1905200 1844700 0 0 0 493880000 266350000 227540000 66320000 30540000 35779000 75811000 44322000 31489000 11358000 5143100 6214700 29750 2306;2307 31281 155349;155350;155351;155352;155353;155354;155355;155356;155357;155358;155359;155360;155361;155362;155363;155364;155365;155366;155367;155368;155369;155370;155371 156181;156182;156183;156184;156185;156186;156187;156188;156189;156190;156191;156192;156193;156194;156195;156196;156197;156198;156199;156200;156201;156202;156203;156204;156205;156206;156207;156208;156209;156210;156211;156212;156213;156214;156215;156216;156217;156218;156219;156220;156221;156222;156223 156187 43 SELVANNVTLPAGEQRK EFLEDPSVLTKDKLKSELVANNVTLPAGEQ LVANNVTLPAGEQRKDVYVQLYLQHLTARN K S E R K D 2 1 2 0 0 1 2 1 0 0 2 1 0 0 1 1 1 0 0 2 0 0 17 1 1824.9694 P42166;P42167;G5E972 P42166 18 34 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 4.5634E-12 148.18 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 4 2 1.0586 1.0208 18.333 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94772 1.0337 5.0503 2 0 Median 1.22 1.1068 14.125 4 0 Median 0.82759 0.852 28.646 4 0 Median 1.2166 1.077 12 2 0 Median 146170000 73888000 72280000 0 0 0 0 0 0 22365000 11123000 11242000 17539000 7775700 9763500 96509000 50844000 45664000 9754100 4144700 5609300 29751 2306;2307 31282 155372;155373;155374;155375;155376;155377;155378;155379;155380;155381;155382;155383 156224;156225;156226;156227;156228;156229;156230;156231;156232;156233;156234;156235;156236;156237;156238;156239;156240;156241 156230 18 SELVNWYLK LRKVEEEEDESALKRSELVNWYLKEIESEI ESALKRSELVNWYLKEIESEIDSEEELINK R S E L K E 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 1 1 1 0 0 9 0 1150.6023 Q14566 Q14566 746 754 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0027284 69.998 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.0685 0.98421 12.389 6 Median 0.99722 0.96852 NaN 1 0 Median 1.1484 1.0174 2.4166 2 0 Median 0.84015 0.91714 NaN 1 0 Median 1.3445 1.1747 NaN 1 0 Median 0.79003 0.81061 NaN 1 0 Median NaN NaN NaN 0 0 Median 27335000 13446000 13889000 7287700 3634600 3653100 8010900 3502500 4508400 10586000 5542500 5043800 490390 196840 293560 960200 569690 390510 0 0 0 29752 2881 31283 155384;155385;155386;155387;155388;155389 156242;156243;156244 156244 3 SEMEVQDAELK PMRITSGPFEPDLYKSEMEVQDAELKALLQ DLYKSEMEVQDAELKALLQSSASRKTQKKK K S E L K A 1 0 0 1 0 1 3 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1277.5809 Q9UQ80 Q9UQ80 345 355 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.00011336 128.86 By matching By MS/MS By MS/MS By MS/MS 1 4 3 3 1.0831 0.9541 13.93 11 Median 1.5465 1.4333 NaN 1 0 Median 1.1015 0.95187 10.995 4 1 Median 1.0232 0.97524 7.3519 3 1 Median 1.079 0.97747 2.7635 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 316850000 150940000 165910000 12304000 4648400 7655800 51927000 24505000 27421000 90688000 44975000 45713000 161930000 76809000 85121000 0 0 0 0 0 0 29753 4360 31284;31285 155390;155391;155392;155393;155394;155395;155396;155397;155398;155399;155400 156245;156246;156247;156248;156249;156250;156251;156252;156253;156254;156255;156256;156257;156258;156259 156258 1938 15 SEMIEAIR KVFLDFFTYAPPKLRSEMIEAIREAVVYLA YAPPKLRSEMIEAIREAVVYLAHTHDGARV R S E I R E 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 8 0 947.47462 Q15397 Q15397 345 352 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0079205 65.038 By MS/MS 1 1.4953 1.5299 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4953 1.5299 NaN 1 0 Median NaN NaN NaN 0 0 Median 9371400 4150500 5220900 0 0 0 0 0 0 0 0 0 0 0 0 9371400 4150500 5220900 0 0 0 29754 2947 31286 155401 156260 156260 1 SEMTPEELQK ______________________________ LNKPKSEMTPEELQKREEEEFNTGPLSVLT K S E Q K R 0 0 0 0 0 1 3 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 10 0 1190.5489 P62316;K7ERG4 P62316 9 18 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.00035174 109.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 4 4 0.94167 0.84333 15.879 16 Median 0.76722 0.72391 5.9824 2 0 Median 1.2413 1.0473 28.149 2 0 Median 0.82835 0.78522 0.43183 2 0 Median 1.0327 0.84333 0.03152 2 0 Median 0.89985 0.99575 8.9176 4 0 Median 1.0723 0.8766 6.4054 4 0 Linear 196850000 104210000 92634000 10984000 6089000 4894800 8375900 4059800 4316200 141710000 75661000 66049000 6477800 3212400 3265400 22035000 11714000 10321000 7265300 3477700 3787700 29755 2586 31287;31288 155402;155403;155404;155405;155406;155407;155408;155409;155410;155411;155412;155413;155414;155415;155416;155417 156261;156262;156263;156264;156265;156266;156267;156268;156269;156270;156271;156272;156273;156274 156272 1254 14 SEMTPEELQKR ______________________________ NKPKSEMTPEELQKREEEEFNTGPLSVLTQ K S E K R E 0 1 0 0 0 1 3 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 11 1 1346.65 P62316;K7ERG4 P62316 9 19 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2;3 0.00010116 69.979 By MS/MS By matching 2 1 0.95571 0.9829 4.9646 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94868 0.99067 1.1142 2 0 Median 1.1191 0.91004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4592900 2412600 2180300 0 0 0 0 0 0 4370500 2309900 2060600 222340 102700 119640 0 0 0 0 0 0 29756 2586 31289 155418;155419;155420 156275;156276 156276 2 SENAVVDGPFLVEK MDLETKMVSVLPIFRSENAVVDGPFLVEKQ RSENAVVDGPFLVEKQKTLPKLPKSAPSIR R S E E K Q 1 0 1 1 0 0 2 1 0 0 1 1 0 1 1 1 0 0 0 3 0 0 14 0 1502.7617 Q8NBF2 Q8NBF2 574 587 NHLRC2 NHL repeat-containing protein 2 yes yes 2 0.00080201 59.975 By MS/MS By matching 2 1 0.92576 0.81186 30.954 3 Median 0.95802 0.89292 43.081 2 0 Median 0.92576 0.81186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19123000 11111000 8012200 15458000 9498200 5959400 3665700 1612900 2052800 0 0 0 0 0 0 0 0 0 0 0 0 29757 3402 31290 155421;155422;155423 156277;156278 156277 2 SENEEFVEVGR FFIILEGSAAVLQRRSENEEFVEVGRLGPS LQRRSENEEFVEVGRLGPSDYFGEIALLMN R S E G R L 0 1 1 0 0 0 4 1 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1293.5837 P10644;K7EM13 P10644 307 317 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2 0.0047649 68.525 By MS/MS 1 1.7176 1.4926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7176 1.4926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3873200 1497900 2375200 0 0 0 0 0 0 0 0 0 3873200 1497900 2375200 0 0 0 0 0 0 29758 1945 31291 155424 156279 156279 1 SENFEELLK ______________________________ NWKIIRSENFEELLKVLGVNVMLRKIAVAA R S E L K V 0 0 1 0 0 0 3 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1107.5448 P29373;Q5SYZ4 P29373 13 21 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2 0.0038329 62.546 By MS/MS By matching By MS/MS 1 1 1 0.94646 0.89469 47.137 3 Median 0.94646 0.89469 NaN 1 0 Median 2.1581 1.7899 NaN 1 0 Median 0.76033 0.72786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20217000 10105000 10112000 5034400 2663400 2371000 3708500 1301800 2406700 11474000 6140200 5334000 0 0 0 0 0 0 0 0 0 29759 2171 31292 155425;155426;155427 156280;156281 156281 2 SENGLEFTSSGSANTETTK KGYGFGLIKLDLKTKSENGLEFTSSGSANT LEFTSSGSANTETTKVTGSLETKYRWTEYG K S E T K V 1 0 2 0 0 0 3 2 0 0 1 1 0 1 0 4 4 0 0 0 0 0 19 0 1958.8705 P21796;C9JI87 P21796 35 53 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 1.1934E-20 162.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1.3317 1.1155 14.559 7 Median 0.97759 0.89813 11.928 2 0 Median 1.3868 1.1628 NaN 1 0 Median 1.3317 1.2763 NaN 1 0 Median 1.3157 1.1044 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4048 1.1543 4.8412 2 0 Median 80041000 36070000 43971000 36069000 18038000 18031000 23383000 9629500 13754000 5042000 2113600 2928400 7286900 3140000 4146800 0 0 0 8260200 3148300 5111900 29760 2092 31293 155428;155429;155430;155431;155432;155433;155434 156282;156283;156284;156285;156286;156287;156288;156289;156290;156291;156292;156293;156294;156295;156296;156297;156298 156289 17 SENLGQGDKPDYFSSVATVVYLR VGGSNTNWKTLYEVKSENLGQGDKPDYFSS KPDYFSSVATVVYLRKENCMYQACPTQDCN K S E L R K 1 1 1 2 0 1 1 2 0 0 2 1 0 1 1 3 1 0 2 3 0 0 23 1 2544.2496 P27694 P27694 450 472 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 3 1.8893E-07 39.288 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.8913 0.86007 34.139 4 Median 0.82854 0.83528 NaN 1 0 Median 0.76789 0.70519 NaN 1 0 Median 1.4576 1.5495 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95882 0.88559 NaN 1 0 Median 7600800 3493000 4107900 3476700 1792700 1684000 2048000 902890 1145100 1851400 693220 1158200 0 0 0 0 0 0 224690 104130 120560 29761 2156 31294 155435;155436;155437;155438 156299;156300 156299 2 SENQEFYQDTFGQQWK QPLQGGDHSGNYGYKSENQEFYQDTFGQQW ENQEFYQDTFGQQWK_______________ K S E W K - 0 0 1 1 0 4 2 1 0 0 0 1 0 2 0 1 1 1 1 0 0 0 16 0 2033.8755 O60506 O60506 608 623 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2;3 0.00013374 54.471 By MS/MS By matching By MS/MS 2 2 3 1.1545 1.1765 8.8413 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1644 1.2173 12.456 2 0 Median 1.4088 1.2221 5.3768 2 0 Median 1.1087 1.0947 6.9986 3 0 Median NaN NaN NaN 0 0 Median 25599000 11846000 13754000 0 0 0 0 0 0 10173000 4763800 5409000 709370 288220 421160 14717000 6793800 7923400 0 0 0 29762 1619 31295 155439;155440;155441;155442;155443;155444;155445 156301;156302;156303;156304;156305 156301 5 SEPFSPSLRPEPPKHPESIK LVVVKEEKIHSPIIRSEPFSPSLRPEPPKH PSLRPEPPKHPESIKAPVHLPQRPEMKPVD R S E I K A 0 1 0 0 0 0 3 0 1 1 1 2 0 1 6 4 0 0 0 0 0 0 20 2 2258.1695 O60885 O60885 1122 1141 BRD4 Bromodomain-containing protein 4 yes yes 4;5 0.00046762 45.916 By MS/MS 2 0.2959 0.39093 5.0137 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2959 0.39093 5.0137 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35696000 27608000 8087500 0 0 0 0 0 0 35696000 27608000 8087500 0 0 0 0 0 0 0 0 0 29763 1638 31296 155446;155447 156306;156307 156306 2 SEPHSLSSEALMR IGFGVTLCAVPIAQKSEPHSLSSEALMRRA QKSEPHSLSSEALMRRAVSLVTDSTSTFLS K S E M R R 1 1 0 0 0 0 2 0 1 0 2 0 1 0 1 4 0 0 0 0 0 0 13 0 1442.6824 Q9NR28;H7BZK7;A0A2U3TZH2 Q9NR28 63 75 DIABLO Diablo homolog, mitochondrial yes no 2;3 1.8945E-07 104.17 By MS/MS By MS/MS 3 1 1.3279 1.1014 32.531 3 Median 1.2727 1.224 45.191 2 0 Median 1.3279 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16326000 7583100 8743000 11064000 5308500 5755500 5262000 2274500 2987400 0 0 0 0 0 0 0 0 0 0 0 0 29764 4075 31297 155448;155449;155450;155451 156308;156309;156310;156311;156312 156311 5 SEPIPESNDGPVK FLQDYFDGNLKRYLKSEPIPESNDGPVKVV LKSEPIPESNDGPVKVVVAENFDEIVNNEN K S E V K V 0 0 1 1 0 0 2 1 0 1 0 1 0 0 3 2 0 0 0 1 0 0 13 0 1367.6569 P30101 P30101 367 379 PDIA3 Protein disulfide-isomerase A3 yes yes 2 4.8234E-07 107.83 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.61937 0.55056 13.374 7 Median 0.56392 0.52601 6.4521 2 0 Median 0.78145 0.66084 11.295 3 0 Plateau 0.48382 0.47725 NaN 1 1 Median 0.75208 0.64491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75975000 44481000 31494000 28839000 17363000 11476000 31274000 17387000 13888000 7692400 5230700 2461800 8169100 4500400 3668700 0 0 0 0 0 0 29765 2189 31298 155452;155453;155454;155455;155456;155457;155458 156313;156314;156315;156316;156317;156318;156319;156320;156321;156322;156323;156324;156325;156326;156327;156328 156314 16 SEPKPGLPEDLQK TRKRRKKKITDVLAKSEPKPGLPEDLQKLM AKSEPKPGLPEDLQKLMKDYYSSRRLVIEL K S E Q K L 0 0 0 1 0 1 2 1 0 0 2 2 0 0 3 1 0 0 0 0 0 0 13 1 1436.7511 C9J384;Q9BQ75 C9J384 41 53 CMSS1 Protein CMSS1 yes no 3 0.0096063 42.789 By MS/MS By MS/MS 1 1 0.67113 0.64322 11.397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56726 0.59342 NaN 1 1 Median 0.79401 0.6972 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10417000 5443500 4973600 0 0 0 0 0 0 6468900 3170900 3298000 3948100 2272600 1675600 0 0 0 0 0 0 29766 673 31299 155459;155460 156329;156330 156330 2 SEPVKEESSELEQPFAQDTSSVGPDR PENEKILDILGETCKSEPVKEESSELEQPF EQPFAQDTSSVGPDRKLAEEEDLFDSAHPE K S E D R K 1 1 0 2 0 2 5 1 0 0 1 1 0 1 3 5 1 0 0 2 0 0 26 1 2847.3046 Q15424;Q14151 Q15424 227 252 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3 5.9684E-79 164.05 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.58572 0.60333 10.793 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50169 0.56934 8.2023 2 1 Median 0.66017 0.63053 5.132 2 0 Median 0.57505 0.61118 15.937 2 1 Median 0.58572 0.50988 NaN 1 0 Median 97456000 68099000 29357000 0 0 0 0 0 0 34255000 24685000 9569900 15158000 8708700 6448800 46129000 33498000 12631000 1914600 1207200 707330 29767 2951;2859 31300 155461;155462;155463;155464;155465;155466;155467 156331;156332;156333;156334;156335;156336;156337;156338 156333 8 SEPVKEESSELEQPFAQDTSSVGPDRK PENEKILDILGETCKSEPVKEESSELEQPF QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE K S E R K L 1 1 0 2 0 2 5 1 0 0 1 2 0 1 3 5 1 0 0 2 0 0 27 2 2975.3996 Q15424;Q14151 Q15424 227 253 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 no no 3;4 1.9845E-46 141.21 By MS/MS By MS/MS By MS/MS By matching 2 3 5 1 0.55933 0.65529 22.941 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56596 0.6449 25.039 2 0 Median 0.82479 0.936 23.866 3 0 Median 0.54404 0.64111 20.229 5 0 Median 0.63871 0.65529 NaN 1 0 Median 160070000 92622000 67445000 0 0 0 0 0 0 57655000 30042000 27613000 6928300 3705900 3222400 94092000 58104000 35988000 1392300 770920 621350 29768 2951;2859 31301 155468;155469;155470;155471;155472;155473;155474;155475;155476;155477;155478 156339;156340;156341;156342;156343;156344;156345;156346;156347;156348;156349 156339 10 SEQDQAENEGEDSAVLMER KAHQRQLTPPEGSSKSEQDQAENEGEDSAV QAENEGEDSAVLMERLCKYIYAKDRTDRIR K S E E R L 2 1 1 2 0 2 5 1 0 0 1 0 1 0 0 2 0 0 0 1 0 0 19 0 2135.8913 Q99613;B5ME19 Q99613 532 550 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2;3 5.8534E-39 204.28 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0015 0.87666 12.772 7 Median 0.96972 0.93535 9.1644 2 0 Median 1.0015 0.86101 4.9659 3 0 Median 1.1053 1.188 NaN 1 0 Median 0.9643 0.82144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27081000 13536000 13545000 19444000 9866800 9577000 2807500 1348200 1459300 3120100 1464100 1656000 1709300 856730 852560 0 0 0 0 0 0 29769 3757 31302 155479;155480;155481;155482;155483;155484;155485 156350;156351;156352;156353;156354 156351 5 SEQEFQEQLESAR KAVRGGGGKGMRIVRSEQEFQEQLESARRE VRSEQEFQEQLESARREAKKSFNDDAMLIE R S E A R R 1 1 0 0 0 3 4 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 13 0 1579.7114 G5E9X5;F5GYT8;E9PG35;E9PHF7;Q96RQ3 G5E9X5 182 194 MCCC1 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial yes no 2 1.7225E-05 92.866 By MS/MS 2 0.81883 0.80641 NaN 1 Median 0.81883 0.80641 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287900 1157700 1130200 2287900 1157700 1130200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29770 921 31303 155486;155487 156355;156356 156356 2 SEQFEELQSILK TTSFQNMAFQDHPEKSEQFEELQSILKKGK PEKSEQFEELQSILKKGKLTFENIMEKLRI K S E L K K 0 0 0 0 0 2 3 0 0 1 2 1 0 1 0 2 0 0 0 0 0 0 12 0 1449.7351 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3618 3629 SYNE2 Nesprin-2 yes no 2 0.0041443 44.318 By MS/MS 1 0.81936 0.89178 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81936 0.89178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2751300 1510900 1240400 0 0 0 0 0 0 2751300 1510900 1240400 0 0 0 0 0 0 0 0 0 29771 3521 31304 155488 156357 156357 1 SEQFEELQSILKK TTSFQNMAFQDHPEKSEQFEELQSILKKGK EKSEQFEELQSILKKGKLTFENIMEKLRIK K S E K K G 0 0 0 0 0 2 3 0 0 1 2 2 0 1 0 2 0 0 0 0 0 0 13 1 1577.8301 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3618 3630 SYNE2 Nesprin-2 yes no 3 0.064738 19.578 By MS/MS 1 0.84706 0.96155 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84706 0.96155 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5819800 3945800 1874000 0 0 0 0 0 0 5819800 3945800 1874000 0 0 0 0 0 0 0 0 0 29772 3521 31305 155489 156358 156358 1 SEQFINLR HLKRDFFLANASRARSEQFINLREVSTRFR ANASRARSEQFINLREVSTRFRLPPGEYVV R S E L R E 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 8 0 1005.5243 P07384 P07384 474 481 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0023669 138.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.4245 1.2312 23.131 4 Median NaN NaN NaN 0 0 Median 1.5505 1.3424 5.5228 2 0 Median 0.81038 0.82643 NaN 1 0 Median 1.363 1.1741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18892000 9133200 9759200 0 0 0 7595700 2949800 4645900 10019000 5676000 4342900 1277800 507460 770350 0 0 0 0 0 0 29773 1886 31306 155490;155491;155492;155493;155494 156359;156360;156361;156362;156363 156360 5 SEQLEELFSQVGPVK AGLTLFVGRLPPSARSEQLEELFSQVGPVK SEQLEELFSQVGPVKQCFVVTEKGSKACRG R S E V K Q 0 0 0 0 0 2 3 1 0 0 2 1 0 1 1 2 0 0 0 2 0 0 15 0 1688.8621 Q9NW13;C9JAA9;C9JE21 Q9NW13 17 31 RBM28 RNA-binding protein 28 yes no 2 8.0711E-10 93.821 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29774 4145 31307 155495 156364 156364 1 SEREDEVLLVSSSR DPEGFKKRAACLCFRSEREDEVLLVSSSRY RSEREDEVLLVSSSRYPDRWIVPGGGMEPE R S E S R Y 0 2 0 1 0 0 3 0 0 0 2 0 0 0 0 4 0 0 0 2 0 0 14 1 1604.8006 Q96G61;Q8NFP7 Q96G61 27 40 NUDT11;NUDT10 Diphosphoinositol polyphosphate phosphohydrolase 3-beta;Diphosphoinositol polyphosphate phosphohydrolase 3-alpha yes no 2;3 0.00017561 93.959 By MS/MS 3 1.0486 1.0991 19.143 2 Median 1.0486 1.0991 19.143 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10181000 4927100 5253700 10181000 4927100 5253700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29775 3653 31308 155496;155497;155498 156365;156366;156367 156366 3 SEREEVSSWR RDLRDDRDRRGPPLRSEREEVSSWRRADDR GPPLRSEREEVSSWRRADDRKDDRVEERDP R S E W R R 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 10 1 1263.5844 Q14152 Q14152 1302 1311 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 0.00026535 73.985 By MS/MS By MS/MS 2 3 1.1308 1.142 39.661 5 Median 1.5899 1.7002 43.006 2 0 Median 0.95626 1.1416 16.666 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9446800 3993200 5453600 3632400 1243400 2388900 5814500 2749800 3064700 0 0 0 0 0 0 0 0 0 0 0 0 29776 2860 31309 155499;155500;155501;155502;155503 156368;156369;156370;156371;156372 156371 5 SERNEFLLLHAFYENNYIVPDK NIAGNIMSRTLMGGRSERNEFLLLHAFYEN LLHAFYENNYIVPDKQIFRKPQQKLGDEDE R S E D K Q 1 1 3 1 0 0 3 0 1 1 3 1 0 2 1 1 0 0 2 1 0 0 22 1 2710.3391 A0A087WU64;A6NMQ1;P09884 A0A087WU64 784 805 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 6.2557E-05 36.246 By MS/MS 1 0.74488 0.75935 NaN 1 Median 0.74488 0.75935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2415400 1369500 1045900 2415400 1369500 1045900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29777 26 31310 155504 156373 156373 1 SERPPIFEIR ERGVGGAPPTVTLLRSERPPIFEIRMYDAQ VTLLRSERPPIFEIRMYDAQQQQVGTNKCR R S E I R M 0 2 0 0 0 0 2 0 0 2 0 0 0 1 2 1 0 0 0 0 0 0 10 1 1242.6721 Q07954 Q07954 784 793 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 0.00042586 80.834 By MS/MS 1 0.70569 0.76688 NaN 1 Median 0.70569 0.76688 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8697200 4550000 4147100 8697200 4550000 4147100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29778 2733 31311 155505 156374 156374 1 SESELIDELSEDFDR GKPLLPEPEEKPKPRSESELIDELSEDFDR SESELIDELSEDFDRSECKEKPSKPTEKTE R S E D R S 0 1 0 3 0 0 4 0 0 1 2 0 0 1 0 3 0 0 0 0 0 0 15 0 1782.7796 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;H0YD33;E7EQA0;A0A0A0MR45;E7EQ12;D6RC54 P20810 364 378 CAST Calpastatin yes no 2 0.00011471 79.693 By MS/MS 2 0.94553 0.85198 11.888 2 Median NaN NaN NaN 0 0 Median 0.94553 0.85198 11.888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1170500 582400 588100 0 0 0 1170500 582400 588100 0 0 0 0 0 0 0 0 0 0 0 0 29779 239 31312 155506;155507 156375;156376 156376 2 SESEVEEAAAIIAQRPDNPR FGDHRDEEEETHMKKSESEVEEAAAIIAQR EEAAAIIAQRPDNPREFFKQQERVASASAG K S E P R E 4 2 1 1 0 1 4 0 0 2 0 0 0 0 2 2 0 0 0 1 0 0 20 1 2181.0662 Q16643;D6R9W4;D6R9Q9 Q16643 272 291 DBN1 Drebrin yes no 3 1.5668E-05 39.863 By matching By MS/MS By MS/MS 1 1 1 0.70943 0.70189 31.163 3 Plateau 0.37145 0.38477 NaN 1 0 Median 0.70943 0.70189 NaN 1 0 Median 0.51862 0.59925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12671000 7538100 5133100 1660200 1204900 455240 7794300 4502400 3291900 3216700 1830800 1385900 0 0 0 0 0 0 0 0 0 29780 2991 31313 155508;155509;155510 156377;156378 156377 2 SESFANYIDER INASLNQEKMNLIQKSESFANYIDEREKSI LIQKSESFANYIDEREKSISELSDQYKQEK K S E E R E 1 1 1 1 0 0 2 0 0 1 0 0 0 1 0 2 0 0 1 0 0 0 11 0 1329.5837 P49454 P49454 997 1007 CENPF Centromere protein F yes yes 2 0.00015911 114.5 By MS/MS By MS/MS 1 1 1.0479 1.012 1.0491 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94974 1.0196 NaN 1 0 Median 1.1561 1.0045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5871500 2574900 3296600 0 0 0 0 0 0 5312700 2353900 2958800 558810 221040 337760 0 0 0 0 0 0 29781 2383 31314 155511;155512 156379;156380;156381 156379 3 SESFANYIDEREK INASLNQEKMNLIQKSESFANYIDEREKSI QKSESFANYIDEREKSISELSDQYKQEKLI K S E E K S 1 1 1 1 0 0 3 0 0 1 0 1 0 1 0 2 0 0 1 0 0 0 13 1 1586.7213 P49454 P49454 997 1009 CENPF Centromere protein F yes yes 3 0.003777 49.31 By MS/MS 1 0.63578 0.73674 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63578 0.73674 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8300600 5416300 2884300 0 0 0 0 0 0 8300600 5416300 2884300 0 0 0 0 0 0 0 0 0 29782 2383 31315 155513 156382 156382 1 SESHTDLTFSR IAKRDIEQIIRNYARSESHTDLTFSRELTN NYARSESHTDLTFSRELTNDERKQIHQIAQ R S E S R E 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 3 2 0 0 0 0 0 11 0 1278.584 O15226 O15226 616 626 NKRF NF-kappa-B-repressing factor yes yes 3 0.0018259 43.68 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1094 1.081 26.903 4 Median NaN NaN NaN 0 0 Median 1.4286 1.3012 NaN 1 0 Median 0.86153 0.92191 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70231 0.74247 NaN 1 0 Median 1.5419 1.2676 NaN 1 0 Median 6321200 3151100 3170100 0 0 0 731290 303930 427360 1789100 891580 897550 0 0 0 3246100 1731300 1514800 554650 224250 330400 29783 1532 31316 155514;155515;155516;155517 156383;156384;156385 156384 3 SESPDHMVSQYQQALEEIER TETDAVFLLESINGKSESPDHMVSQYQQAL HMVSQYQQALEEIERLKKQCSALQHVKAEC K S E E R L 1 1 0 1 0 3 4 0 1 1 1 0 1 0 1 3 0 0 1 1 0 0 20 0 2375.07 Q14149;H0YHQ4;H0YIR5 Q14149 763 782 MORC3 MORC family CW-type zinc finger protein 3 yes no 3 0.059266 7.8038 By MS/MS 1 1.1345 1.2213 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1345 1.2213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 916980 454730 462260 0 0 0 0 0 0 916980 454730 462260 0 0 0 0 0 0 0 0 0 29784 2858 31317 155518 156386 156386 1 SESPKEPEQLR ______________________________ ______________________________ K S E L R K 0 1 0 0 0 1 3 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 11 1 1298.6466 P09651;F8W6I7;F8VTQ5;F8W646 P09651 4 14 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 2;3 3.9927E-05 138.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 6 10 8 0.77867 0.76465 13.39 32 Median 0.77753 0.76878 NaN 1 0 Median 0.85072 0.78016 15.997 4 0 Median 0.70514 0.75148 4.4939 4 0 Linear 0.90516 0.85421 10.158 6 0 Median 0.72616 0.7828 13.122 9 0 Median 0.82053 0.73424 13.833 8 0 Median 262840000 148250000 114590000 1389800 705010 684830 7207800 3743500 3464200 67030000 37695000 29335000 29274000 15184000 14089000 140300000 81666000 58633000 17644000 9261300 8382400 29785 1919 31318 155519;155520;155521;155522;155523;155524;155525;155526;155527;155528;155529;155530;155531;155532;155533;155534;155535;155536;155537;155538;155539;155540;155541;155542;155543;155544;155545;155546;155547;155548;155549;155550;155551 156387;156388;156389;156390;156391;156392;156393;156394;156395;156396;156397;156398;156399;156400;156401;156402;156403;156404;156405;156406;156407;156408;156409;156410;156411;156412;156413;156414;156415;156416;156417;156418;156419;156420;156421;156422;156423;156424;156425;156426;156427;156428 156414 42 SESPKEPEQLRK ______________________________ MSKSESPKEPEQLRKLFIGGLSFETTDESL K S E R K L 0 1 0 0 0 1 3 0 0 0 1 2 0 0 2 2 0 0 0 0 0 0 12 2 1426.7416 P09651;F8W6I7;F8VTQ5;F8W646 P09651 4 15 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes no 2;3 1.1693E-06 120.68 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 5 6 4 0.83963 0.84198 7.7939 24 Median 0.83977 0.88911 9.7104 3 0 Median 0.93623 0.9482 10.743 3 0 Median 0.74899 0.8408 3.094 3 0 Median 0.86577 0.84299 2.8479 5 0 Median 0.71509 0.83406 3.8172 6 0 Median 0.89913 0.82568 5.7241 4 0 Median 130860000 74339000 56518000 1052900 541920 511000 1624800 786060 838720 13828000 7847300 5980400 13656000 7242300 6414100 96051000 55540000 40510000 4644800 2381400 2263400 29786 1919 31319 155552;155553;155554;155555;155556;155557;155558;155559;155560;155561;155562;155563;155564;155565;155566;155567;155568;155569;155570;155571;155572;155573;155574;155575 156429;156430;156431;156432;156433;156434;156435;156436;156437;156438;156439;156440;156441;156442;156443;156444;156445;156446;156447;156448;156449;156450;156451;156452;156453;156454;156455;156456;156457;156458;156459;156460 156458 32 SESSTSAFSTPTR SSPERKKRILKPQLKSESSTSAFSTPTRSI LKSESSTSAFSTPTRSIPPRHNAAQINGKT K S E T R S 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 5 3 0 0 0 0 0 13 0 1356.6157 Q8WWQ0 Q8WWQ0 1471 1483 PHIP PH-interacting protein yes yes 2 3.8991E-05 90.685 By MS/MS By matching 1 1 1.2163 1.1386 46.646 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78075 0.81873 NaN 1 0 Median 1.8948 1.5836 NaN 1 0 Median 3474100 1973100 1500900 0 0 0 0 0 0 0 0 0 0 0 0 2269800 1367700 902100 1204200 605410 598820 29787 3512 31320 155576;155577 156461;156462 156462 2 SESVPPVTDWAWYK SEHINEGETAMLVCKSESVPPVTDWAWYKI KSESVPPVTDWAWYKITDSEDKALMNGSES K S E Y K I 1 0 0 1 0 0 1 0 0 0 0 1 0 0 2 2 1 2 1 2 0 0 14 0 1663.7882 P35613;A0A087WUV8;A0A087X2B5;I3L192;R4GMX5;R4GN83 P35613 244 257 BSG Basigin yes no 2 0.02097 44.309 By MS/MS 1 0.71264 0.6678 NaN 1 Median 0.71264 0.6678 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307300 2102500 1204800 3307300 2102500 1204800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29788 2249 31321 155578 156463 156463 1 SETAPAAPAAAPPAEK ______________________________ ETAPAAPAAAPPAEKAPVKKKAAKKAGGTP M S E E K A 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P16403 P16403 2 17 HIST1H1C Histone H1.2 yes yes 2 4.3989E-10 106.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 9 5 14 9 0.55935 0.49019 27.791 38 Median 0.59705 0.55008 4.9994 2 1 Median 0.91472 0.76876 13.841 2 0 Median 0.46428 0.44742 34.118 8 3 Median 0.79194 0.65808 14.815 4 1 Median 0.4116 0.41215 16.002 13 2 Median 0.6789 0.556 10.816 9 1 Median 4146100000 2823600000 1322500000 24689000 15103000 9586200 22119000 10777000 11342000 367200000 252600000 114610000 96289000 51679000 44610000 2988200000 2129200000 859050000 647520000 364220000 283290000 29789 2029 31322;31323 155579;155580;155581;155582;155583;155584;155585;155586;155587;155588;155589;155590;155591;155592;155593;155594;155595;155596;155597;155598;155599;155600;155601;155602;155603;155604;155605;155606;155607;155608;155609;155610;155611;155612;155613;155614;155615;155616;155617;155618;155619 156464;156465;156466;156467;156468;156469;156470;156471;156472;156473;156474;156475;156476;156477;156478;156479;156480;156481;156482;156483;156484;156485;156486;156487;156488;156489;156490;156491;156492;156493;156494;156495;156496;156497;156498;156499;156500;156501;156502;156503;156504;156505;156506;156507;156508;156509;156510;156511;156512;156513;156514;156515;156516;156517;156518;156519;156520;156521;156522;156523;156524;156525;156526;156527;156528;156529 156518 66 SETAPAAPAAAPPAEKAPVK ______________________________ AAPAAAPPAEKAPVKKKAAKKAGGTPRKAS M S E V K K 8 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 1 0 0 1 0 0 20 1 1872.9945 P16403 P16403 2 21 HIST1H1C Histone H1.2 yes yes 2;3 1.9887E-19 138.55 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 10 3 0.34781 0.38143 28.834 17 Median 0.34042 0.33044 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.28596 0.29871 NaN 1 0 Median 0.88044 0.51023 30.519 4 0 Linear 0.33736 0.3685 21.926 8 1 Median 0.59902 0.50372 7.624 3 1 Plateau 2669600000 1917300000 752280000 16161000 11008000 5153500 0 0 0 10502000 7470100 3031900 63924000 33051000 30873000 2436200000 1781300000 654950000 142790000 84520000 58267000 29790 2029 31324;31325 155620;155621;155622;155623;155624;155625;155626;155627;155628;155629;155630;155631;155632;155633;155634;155635;155636;155637;155638 156530;156531;156532;156533;156534;156535;156536;156537;156538;156539;156540;156541;156542;156543;156544;156545;156546;156547;156548;156549;156550;156551;156552;156553;156554;156555;156556;156557;156558;156559 156552 30 SETAPAAPAAAPPAEKAPVKK ______________________________ APAAAPPAEKAPVKKKAAKKAGGTPRKASG M S E K K K 8 0 0 0 0 0 2 0 0 0 0 3 0 0 5 1 1 0 0 1 0 0 21 2 2001.0895 P16403 P16403 2 22 HIST1H1C Histone H1.2 yes yes 2;3 3.9557E-23 117.2 By MS/MS By MS/MS By MS/MS 2 7 3 0.34443 0.37685 34.549 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79383 0.74062 27.045 2 0 Median 0.31422 0.35031 6.2755 7 1 Median 0.63125 0.59254 12.204 3 0 Median 3029500000 2204300000 825210000 0 0 0 0 0 0 0 0 0 40312000 21208000 19105000 2926400000 2146500000 779930000 62809000 36626000 26182000 29791 2029 31326 155639;155640;155641;155642;155643;155644;155645;155646;155647;155648;155649;155650 156560;156561;156562;156563;156564;156565;156566;156567;156568;156569;156570;156571;156572;156573;156574;156575;156576;156577;156578;156579;156580;156581 156569 22 SETAPAAPAAPAPAEK ______________________________ ETAPAAPAAPAPAEKTPVKKKARKSAGAAK M S E E K T 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P10412 P10412 2 17 HIST1H1E Histone H1.4 yes yes 2 8.7955E-10 102.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.45989 0.3885 20.241 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39559 0.3788 NaN 1 0 Median 0.61522 0.52275 NaN 1 0 Median 0.31032 0.31094 NaN 1 0 Median 0.51635 0.42786 13.647 2 1 Median 32285000 23548000 8737700 0 0 0 0 0 0 2489000 1788200 700850 1199100 726780 472310 20947000 16121000 4826200 7649900 4911600 2738300 29792 1937 31327 155651;155652;155653;155654;155655;155656 156582;156583;156584;156585;156586;156587;156588;156589 156584 8 SETAPAAPAAPAPAEKTPVK ______________________________ AAPAAPAPAEKTPVKKKARKSAGAAKRKAS M S E V K K 7 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 2 0 0 1 0 0 20 1 1903.0051 P10412 P10412 2 21 HIST1H1E Histone H1.4 yes yes 2;3 4.545E-19 139.77 By MS/MS By MS/MS By MS/MS 1 7 2 0.40221 0.43233 38.628 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95218 0.8576 NaN 1 0 Median 0.38153 0.40994 40.319 7 2 Median 0.64739 0.56356 18.645 2 0 Median 569860000 392770000 177090000 0 0 0 0 0 0 0 0 0 4694200 2097500 2596700 551350000 382560000 168790000 13809000 8113600 5695800 29793 1937 31328;31329 155657;155658;155659;155660;155661;155662;155663;155664;155665;155666 156590;156591;156592;156593;156594;156595;156596;156597;156598;156599;156600;156601;156602;156603;156604;156605;156606 156590 17 SETAPAAPAAPAPAEKTPVKK ______________________________ APAAPAPAEKTPVKKKARKSAGAAKRKASG M S E K K K 7 0 0 0 0 0 2 0 0 0 0 3 0 0 5 1 2 0 0 1 0 0 21 2 2031.1001 P10412 P10412 2 22 HIST1H1E Histone H1.4 yes yes 3 6.6949E-12 70.452 By matching By MS/MS By MS/MS 1 4 1 0.43493 0.47587 28.993 6 Median 0.31197 0.32588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43493 0.47587 14.344 4 1 Median 0.7745 0.75861 NaN 1 1 Median 366570000 253720000 112860000 1211900 1005800 206070 0 0 0 0 0 0 0 0 0 357070000 248740000 108330000 8289200 3974100 4315100 29794 1937 31330 155667;155668;155669;155670;155671;155672 156607;156608;156609;156610;156611;156612;156613 156609 6 SETAPLAPTIPAPAEK ______________________________ ETAPLAPTIPAPAEKTPVKKKAKKAGATAG M S E E K T 4 0 0 0 0 0 2 0 0 1 1 1 0 0 4 1 2 0 0 0 0 0 16 0 1591.8457 P16402 P16402 2 17 HIST1H1D Histone H1.3 yes yes 2 7.6248E-06 85.672 By MS/MS By matching By MS/MS By matching 2 1 4 3 0.48474 0.49734 27.628 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32438 0.31078 21.972 2 0 Median 0.67091 0.57407 NaN 1 0 Median 0.44327 0.44891 12.903 4 0 Median 0.69791 0.5828 6.9897 3 0 Median 142120000 95875000 46245000 0 0 0 0 0 0 12009000 8471700 3537000 463880 256080 207800 127550000 85918000 41628000 2101200 1229100 872130 29795 2028 31331 155673;155674;155675;155676;155677;155678;155679;155680;155681;155682 156614;156615;156616;156617;156618;156619;156620;156621;156622;156623;156624;156625 156620 12 SETAPLAPTIPAPAEKTPVK ______________________________ LAPTIPAPAEKTPVKKKAKKAGATAGKRKA M S E V K K 4 0 0 0 0 0 2 0 0 1 1 2 0 0 5 1 3 0 0 1 0 0 20 1 2017.1096 P16402 P16402 2 21 HIST1H1D Histone H1.3 yes yes 2 1.6831E-06 50.222 By MS/MS 1 0.35405 0.37468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35405 0.37468 NaN 1 0 Median NaN NaN NaN 0 0 Median 13019000 9044200 3974700 0 0 0 0 0 0 0 0 0 0 0 0 13019000 9044200 3974700 0 0 0 29796 2028 31332 155683 156626;156627 156626 2 SETAPLAPTIPAPAEKTPVKK ______________________________ APTIPAPAEKTPVKKKAKKAGATAGKRKAS M S E K K K 4 0 0 0 0 0 2 0 0 1 1 3 0 0 5 1 3 0 0 1 0 0 21 2 2145.2045 P16402 P16402 2 22 HIST1H1D Histone H1.3 yes yes 3 7.3853E-07 47.499 By MS/MS 1 0.38141 0.41731 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38141 0.41731 NaN 1 0 Median NaN NaN NaN 0 0 Median 24129000 17485000 6643500 0 0 0 0 0 0 0 0 0 0 0 0 24129000 17485000 6643500 0 0 0 29797 2028 31333 155684 156628;156629 156629 2 SETDLLDIR AGTKDRTLIRIMVSRSETDLLDIRSEYKRM RIMVSRSETDLLDIRSEYKRMYGKSLYHDI R S E I R S 0 1 0 2 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1060.5401 P50995;H0Y6E1 P50995 462 470 ANXA11 Annexin A11 yes no 2 0.0049967 69.423 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 1 2 1.2126 1.1728 48.912 7 Median 0.88938 0.93235 4.9532 2 0 Median 1.3573 1.1728 NaN 1 0 Median 1.2126 1.2214 NaN 1 1 Median NaN NaN NaN 0 0 Median 3.5413 3.57 NaN 1 1 Median 1.2455 1.0408 29.681 2 0 Median 28259000 13745000 14514000 10698000 5820900 4877100 1975200 828990 1146200 9515500 5199100 4316400 0 0 0 2949600 588900 2360700 3121200 1307300 1813900 29798 2425 31334 155685;155686;155687;155688;155689;155690;155691;155692 156630;156631;156632;156633;156634 156630 5 SETDTSLIR PIDLFMIEIMEMKHKSETDTSLIRGLVLDH MEMKHKSETDTSLIRGLVLDHGARHPDMKK K S E I R G 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 2 2 0 0 0 0 0 9 0 1020.5088 P40227 P40227 200 208 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.00064128 107.66 By MS/MS 2 1.8428 1.5728 52.479 2 Median NaN NaN NaN 0 0 Median 1.8428 1.5728 52.479 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15480000 5594300 9885700 0 0 0 15480000 5594300 9885700 0 0 0 0 0 0 0 0 0 0 0 0 29799 2285 31335 155693;155694 156635;156636;156637 156636 3 SETEDSILHQLFIVR GRRTNPFGESGGSTKSETEDSILHQLFIVR SETEDSILHQLFIVRFLGSMEVKSDDHPDV K S E V R F 0 1 0 1 0 1 2 0 1 2 2 0 0 1 0 2 1 0 0 1 0 0 15 0 1785.9261 Q9UKG1 Q9UKG1 491 505 APPL1 DCC-interacting protein 13-alpha yes yes 2 0.018916 42.001 By MS/MS 1 0.5149 0.44499 NaN 1 Median NaN NaN NaN 0 0 Median 0.5149 0.44499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8994400 5613500 3380900 0 0 0 8994400 5613500 3380900 0 0 0 0 0 0 0 0 0 0 0 0 29800 4310 31336 155695 156638 156638 1 SETELKDTYAR NGDVTSTILQTIMEKSETELKDTYARWLPL IMEKSETELKDTYARWLPLGLGLNHLGKGE K S E A R W 1 1 0 1 0 0 2 0 0 0 1 1 0 0 0 1 2 0 1 0 0 0 11 1 1311.6307 Q13200;H7C1H2 Q13200 546 556 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 0.00053315 125.56 By MS/MS By MS/MS 3 1 1.2419 1.2904 9.6565 3 Median 1.1909 1.2381 5.8498 2 1 Median 1.4459 1.4401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11455000 5138300 6316800 6689600 3050200 3639400 4765400 2088000 2677400 0 0 0 0 0 0 0 0 0 0 0 0 29801 2796 31337 155696;155697;155698;155699 156639;156640;156641;156642;156643;156644 156644 6 SETILSPPPEKR IHPELLAKKRGTKGKSETILSPPPEKRGRK KGKSETILSPPPEKRGRKATSGKKGGKKSK K S E K R G 0 1 0 0 0 0 2 0 0 1 1 1 0 0 3 2 1 0 0 0 0 0 12 1 1352.73 Q9P0M6 Q9P0M6 124 135 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 0.0036063 81.338 By MS/MS 2 0.39251 0.42472 4.9599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39251 0.42472 4.9599 2 0 Median NaN NaN NaN 0 0 Median 6894900 4822000 2072900 0 0 0 0 0 0 0 0 0 0 0 0 6894900 4822000 2072900 0 0 0 29802 4206 31338 155700;155701 156645;156646 156645 0 SETISVPQEIK EVLYFAKSAEITGVRSETISVPQEIKALQL TGVRSETISVPQEIKALQLWKEIETRHPGL R S E I K A 0 0 0 0 0 1 2 0 0 2 0 1 0 0 1 2 1 0 0 1 0 0 11 0 1229.6503 E9PKT9;O96033 E9PKT9 18 28 MOCS2 Molybdopterin synthase sulfur carrier subunit yes no 2 0.001697 57.598 By MS/MS By MS/MS By matching 1 1 1 0.97034 0.83531 4.2406 3 Plateau 0.88195 0.80487 NaN 1 1 Median 1.0676 0.87592 NaN 1 0 Median 0.82185 0.83531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13406000 7173400 6233100 7142700 4103800 3039000 5680000 2712000 2968000 583740 357630 226110 0 0 0 0 0 0 0 0 0 29803 950 31339 155702;155703;155704 156647;156648;156649 156648 3 SETSGPQIK REKAERAARLAKEAKSETSGPQIKELTDEE LAKEAKSETSGPQIKELTDEEAERLQLEID K S E I K E 0 0 0 0 0 1 1 1 0 1 0 1 0 0 1 2 1 0 0 0 0 0 9 0 945.47673 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 97 105 NUDC Nuclear migration protein nudC yes no 2 0.0036742 63.48 By matching By MS/MS 1 1 0.96435 0.88271 14.744 2 Median 1.0084 0.97971 NaN 1 0 Median 0.92226 0.79532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2476200 1240300 1235900 247240 120300 126940 2229000 1120000 1109000 0 0 0 0 0 0 0 0 0 0 0 0 29804 4376 31340 155705;155706 156650;156651 156651 2 SETSTSDNTETYQENTSSSGHPTFK ______________________________ TYQENTSSSGHPTFKCPLCQESNFTRQRLL - S E F K C 0 0 2 1 0 1 3 1 1 0 0 1 0 1 1 6 6 0 1 0 0 0 25 0 2734.1478 J3QLQ3;Q8WVD3 J3QLQ3 1 25 RNF138 E3 ubiquitin-protein ligase RNF138 yes no 3 6.8393E-13 57.578 By MS/MS 1 0.94148 0.79387 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94148 0.79387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2596700 1265700 1331000 0 0 0 0 0 0 0 0 0 2596700 1265700 1331000 0 0 0 0 0 0 29805 1340 31341 155707 156652;156653 156652 2 SEVAKDFEPER AAIQQEHREKELQKRSEVAKDFEPERVVAA LQKRSEVAKDFEPERVVAAPQRPGTEPQPE R S E E R V 1 1 0 1 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 11 1 1305.6201 O95202 O95202 489 499 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2;3 0.0028272 66.435 By MS/MS 2 0.93663 0.95973 1.187 2 Median 0.93663 0.95973 1.187 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6046200 3135400 2910700 6046200 3135400 2910700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29806 1754 31342 155708;155709 156654;156655;156656;156657 156655 4 SEVATLTAAGK GLCGAIHSSIAKQMKSEVATLTAAGKEVML KQMKSEVATLTAAGKEVMLVGIGDKIRGIL K S E G K E 3 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1046.5608 P36542 P36542 116 126 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 0.00015337 107.15 By MS/MS By MS/MS By matching 2 2 2 1.0624 0.98939 19.948 6 Median 1.0624 0.98939 0.1039 2 0 Median 1.4512 1.229 9.7358 2 0 Median 0.78575 0.80279 8.9935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60469000 27423000 33046000 38855000 18014000 20841000 18863000 8042100 10821000 2751300 1367000 1384300 0 0 0 0 0 0 0 0 0 29807 2257 31343 155710;155711;155712;155713;155714;155715 156658;156659;156660;156661;156662 156658 4 SEVDMLK KGTRDKVLIRIMVSRSEVDMLKIRSEFKRK LIRIMVSRSEVDMLKIRSEFKRKYGKSLYY R S E L K I 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 7 0 820.40005 P07355;A6NMY6 P07355 296 302 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.0054115 97.071 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 1 1 1.1565 0.98315 11.967 9 Median 1.04 0.98742 11.914 2 0 Median 1.1013 0.93056 19.44 2 0 Median NaN NaN NaN 0 0 Median 1.2394 1.0518 16.792 3 0 Plateau 0.98779 0.97802 NaN 1 0 Median 1.2111 0.9874 NaN 1 0 Median 100630000 45718000 54916000 12088000 5553800 6534500 41552000 19431000 22120000 0 0 0 40317000 17537000 22781000 2452300 1414700 1037600 4225000 1782000 2443000 29808 1885 31344 155716;155717;155718;155719;155720;155721;155722;155723;155724 156663;156664;156665;156666;156667;156668;156669;156670;156671;156672;156673;156674 156672 12 SEVELAAALSDKR VAQGRVKDLESLFHRSEVELAAALSDKRGL HRSEVELAAALSDKRGLESDVAELRAQLAK R S E K R G 3 1 0 1 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 1 1387.7307 Q03252 Q03252 159 171 LMNB2 Lamin-B2 yes yes 2;3 3.2662E-15 187.42 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 9 6 0.99494 1.0904 25.31 21 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94332 1.0036 3.4627 2 0 Median 1.8978 1.7784 25.642 4 1 Median 0.88818 0.96232 8.8839 9 0 Median 1.3873 1.226 13.408 6 0 Median 284420000 136720000 147700000 0 0 0 0 0 0 50889000 25855000 25034000 24291000 7633900 16657000 181860000 92431000 89434000 27376000 10805000 16571000 29809 2709 31345 155725;155726;155727;155728;155729;155730;155731;155732;155733;155734;155735;155736;155737;155738;155739;155740;155741;155742;155743;155744;155745 156675;156676;156677;156678;156679;156680;156681;156682;156683;156684;156685;156686;156687;156688;156689;156690;156691;156692;156693;156694;156695;156696;156697;156698;156699;156700;156701;156702;156703;156704;156705 156682 30 SEVNDKNHEMEEIR MAQLQDLKNQHLAKKSEVNDKNHEMEEIRK KSEVNDKNHEMEEIRKKLGGANKEMTHLQK K S E I R K 0 1 2 1 0 0 4 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 14 1 1728.7737 Q14683;G8JLG1 Q14683 882 895 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 3 0.036274 27.649 By MS/MS By MS/MS 1 1 1.1743 1.2276 17.967 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1199 1.0811 NaN 1 0 Median 1.2313 1.3939 NaN 1 1 Median NaN NaN NaN 0 0 Median 1756800 825100 931750 0 0 0 0 0 0 0 0 0 665290 312750 352540 1091600 512340 579210 0 0 0 29810 2889 31346 155746;155747 156706;156707 156707 2 SEVQAMLGQSTEELR GSDMEDLRNRLAQYRSEVQAMLGQSTEELR SEVQAMLGQSTEELRARMASHLRKLPKRLL R S E L R A 1 1 0 0 0 2 3 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 15 0 1676.8039 CON__Q03247 CON__Q03247 137 151 yes yes 2 1.3145E-62 197.3 By MS/MS By MS/MS By MS/MS 2 4 6 0.15793 0.15622 124.95 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12359 0.12231 34.606 2 2 Median 0.067822 0.055887 154.08 3 3 Median 0.29711 0.29605 145.79 4 4 Median NaN NaN NaN 0 0 Median 50217000 43669000 6548200 0 0 0 0 0 0 10854000 9859600 994390 10202000 9402900 798640 29161000 24406000 4755100 0 0 0 + 29811 767 31347;31348 155748;155749;155750;155751;155752;155753;155754;155755;155756;155757;155758;155759 156708;156709;156710;156711;156712;156713;156714;156715;156716;156717;156718;156719 156715 289 12 SEVQQPVHPKPLSPDSR RSTPAEDDSRDSQVKSEVQQPVHPKPLSPD VQQPVHPKPLSPDSRASSLSESSPPKAMKK K S E S R A 0 1 0 1 0 2 1 0 1 0 1 1 0 0 4 3 0 0 0 2 0 0 17 1 1899.9803 Q9UHB6;F8VQE1;F8VS07;F8VRN8 Q9UHB6 350 366 LIMA1 LIM domain and actin-binding protein 1 yes no 3;4 4.514E-05 48.547 By MS/MS By matching 2 1 0.36885 0.39157 6.4441 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34926 0.37079 7.708 2 0 Median 0.44846 0.39354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10971000 7509100 3462300 0 0 0 0 0 0 10091000 7067900 3023300 880270 441290 438980 0 0 0 0 0 0 29812 4273 31349 155760;155761;155762 156720;156721;156722;156723 156722 4 SEVSEEVTENGTEEAAK CIRGKLNITSLQFKRSEVSEEVTENGTEEA VSEEVTENGTEEAAKKPKKKKKKKDPETYE R S E A K K 2 0 1 0 0 0 6 1 0 0 0 1 0 0 0 2 2 0 0 2 0 0 17 0 1807.7959 Q3B726 Q3B726 208 224 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 9.1984E-13 155.02 By MS/MS 1 0.88694 0.91945 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88694 0.91945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9019500 4872800 4146700 0 0 0 0 0 0 9019500 4872800 4146700 0 0 0 0 0 0 0 0 0 29813 3009 31350 155763 156724;156725 156725 2 SEVSSDEDIQFR SDMDSILASLKLPPKSEVSSDEDIQFRLVT PPKSEVSSDEDIQFRLVTRFVNEAVMCLQE K S E F R L 0 1 0 2 0 1 2 0 0 1 0 0 0 1 0 3 0 0 0 1 0 0 12 0 1410.6263 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 665 676 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 3.0793E-06 136.63 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1458 1.06 14.187 6 Median 1.0374 0.99208 7.0197 2 0 Median 1.3188 1.1534 9.6007 2 1 Median 0.91121 0.92895 NaN 1 0 Median 1.5335 1.3216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53998000 24934000 29064000 26813000 12946000 13867000 9163500 3904100 5259300 10311000 5150100 5161200 7710700 2934500 4776100 0 0 0 0 0 0 29814 1180 31351 155764;155765;155766;155767;155768;155769;155770 156726;156727;156728;156729;156730;156731;156732;156733;156734;156735;156736 156728 11 SEVTDLRR NREVAGHTEQLQMSRSEVTDLRRTLQGLEI EQLQMSRSEVTDLRRTLQGLEIELQSQLSM R S E R R T 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 1 974.51451 CON__P08727;P08727;K7EMS3;CON__Q99456;Q99456 CON__P08727 294 301 KRT19;KRT12 Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 yes no 2 0.0034627 119.89 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 1.0936 1.1673 19.74 9 Median 0.96893 1.0195 NaN 1 0 Median 1.7832 1.6653 NaN 1 0 Median 0.87114 0.90102 18.165 2 0 Median 1.3793 1.2142 NaN 1 0 Median 1.0784 1.1528 1.7612 2 0 Median 1.3738 1.2114 0.3158 2 0 Median 32739000 14494000 18245000 1284400 615680 668720 5997400 2050700 3946700 8642800 4184300 4458400 1143400 483500 659880 9318800 4693900 4624900 6352100 2465500 3886600 + 29815 752 31352 155771;155772;155773;155774;155775;155776;155777;155778;155779 156737;156738;156739;156740;156741;156742 156737 6 SEVTFLAPVTRPDK VARRALAAQLPVLPRSEVTFLAPVTRPDKV RSEVTFLAPVTRPDKVVCVGMNYVDHCKEQ R S E D K V 1 1 0 1 0 0 1 0 0 0 1 1 0 1 2 1 2 0 0 2 0 0 14 1 1558.8355 Q96GK7;C9JGM0 Q96GK7 94 107 FAHD2A Fumarylacetoacetate hydrolase domain-containing protein 2A yes no 2;3 0.00077665 79.693 By MS/MS By matching By matching By matching 2 1 1 1 0.87766 0.86387 25.395 5 Median 0.61156 0.61443 0.71238 2 0 Median 0.95196 0.86387 NaN 1 0 Median 0.87766 0.96738 NaN 1 0 Median 1.1182 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27893000 16436000 11457000 24359000 14606000 9752900 1989300 1010600 978710 1338400 731580 606770 206330 87946 118390 0 0 0 0 0 0 29816 3658 31353 155780;155781;155782;155783;155784 156743;156744;156745 156743 3 SEWETLSR VVLFFPDVWHCLPTRSEWETLSRGYKQQLV WHCLPTRSEWETLSRGYKQQLVEKLQGERK R S E S R G 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 2 1 1 0 0 0 0 8 0 1006.472 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6 Q8IX12 584 591 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0023173 112.37 By MS/MS By MS/MS 1 1 0.90493 0.87478 12.57 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86967 0.95609 NaN 1 0 Median 0.94163 0.80038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21073000 10676000 10397000 0 0 0 0 0 0 17303000 8846800 8456200 3769600 1828800 1940800 0 0 0 0 0 0 29817 3331 31354 155785;155786 156746;156747;156748;156749 156747 4 SEWGSLLEELVAEGK VIGGDGSLTGANIFRSEWGSLLEELVAEGK SEWGSLLEELVAEGKISETTARTYSHLNIA R S E G K I 1 0 0 0 0 0 4 2 0 0 3 1 0 0 0 2 0 1 0 1 0 0 15 0 1645.8199 P17858 P17858 130 144 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2 0.00038099 62.408 By MS/MS 1 1.3308 1.1636 NaN 1 Median NaN NaN NaN 0 0 Median 1.3308 1.1636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5022000 2046700 2975300 0 0 0 5022000 2046700 2975300 0 0 0 0 0 0 0 0 0 0 0 0 29818 2047 31355 155787 156750 156750 1 SEWNTVER EYKVFVRKLRKAYGKSEWNTVERLKDNKPN LRKAYGKSEWNTVERLKDNKPNYKLDHIIK K S E E R L 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 8 0 1019.4672 B5MCF9;O00541 B5MCF9 99 106 PES1 Pescadillo homolog yes no 2 0.0069279 69.198 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.0693 1.0512 11.088 6 Median NaN NaN NaN 0 0 Median 1.0389 0.9007 NaN 1 0 Median 0.98824 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0156 1.0455 14.95 2 0 Median 1.3503 1.1315 6.2236 2 0 Median 20762000 10388000 10373000 0 0 0 2645100 1050900 1594200 6448200 3021100 3427100 0 0 0 7525900 4363700 3162200 4142400 1952500 2189800 29819 618 31356 155788;155789;155790;155791;155792;155793 156751;156752;156753 156752 3 SEWQSMTQESFQESSVK VRASQESEARIQQLKSEWQSMTQESFQESS WQSMTQESFQESSVKELRRLEDQLAGLQQE K S E V K E 0 0 0 0 0 3 3 0 0 0 0 1 1 1 0 5 1 1 0 1 0 0 17 0 2016.8735 Q9UH99 Q9UH99 393 409 SUN2 SUN domain-containing protein 2 yes yes 2 0.0005337 41.401 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.127 0.99525 27.719 5 Median 0.70535 0.70678 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.127 1.1852 NaN 1 0 Median 1.6846 1.481 NaN 1 0 Median 0.89249 0.91974 NaN 1 0 Median 1.1708 0.99525 NaN 1 0 Median 9056400 4634800 4421600 1421500 781040 640430 0 0 0 5313900 2690600 2623300 96913 40001 56912 2017400 1021700 995680 206780 101470 105310 29820 4271 31357 155794;155795;155796;155797;155798 156754;156755;156756 156755 3 SEWSDLLSDLQK VIGGDGSLTGADTFRSEWSDLLSDLQKAGK TFRSEWSDLLSDLQKAGKITDEEATKSSYL R S E Q K A 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 3 0 1 0 0 0 0 12 0 1419.6882 A0A2R8Y891;P08237;F8VZI0;F8VX13;F8VZQ1 A0A2R8Y891 233 244 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.013861 35.541 By matching By MS/MS 2 2 1.374 1.2773 22.029 4 Median 1.2204 1.2095 2.7267 2 0 Median 1.8046 1.5932 26.257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7443100 2935300 4507800 2715900 1174200 1541600 4727200 1761100 2966100 0 0 0 0 0 0 0 0 0 0 0 0 29821 390 31358 155799;155800;155801;155802 156757 156757 1 SEYIETASGNK ______________________________ LYNKSEYIETASGNKVSRQSVLCGSQNIVL K S E N K V 1 0 1 0 0 0 2 1 0 1 0 1 0 0 0 2 1 0 1 0 0 0 11 0 1197.5513 H3BUD2;H3BS05;H3BR94;Q9BTE1 H3BUD2 11 21 DCTN5 Dynactin subunit 5 yes no 2 0.00077434 62.823 By matching By MS/MS By MS/MS 1 1 1 1.1857 1.124 16.948 3 Plateau 1.1727 1.1066 NaN 1 0 Median 0.9486 0.83179 NaN 1 0 Median 1.1857 1.124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6530600 2921200 3609500 1923700 971060 952650 406630 212170 194460 4200300 1737900 2462400 0 0 0 0 0 0 0 0 0 29822 1227 31359 155803;155804;155805 156758;156759 156758 2 SEYLEVK VEKNYAFEIPDVPEKSEYLEVKYSAEMPQL EIPDVPEKSEYLEVKYSAEMPQLPQDLKGE K S E V K Y 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 7 0 866.43855 A0A087WU64;A6NMQ1;P09884 A0A087WU64 450 456 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.057914 49.358 By MS/MS 1 1.3389 1.1703 NaN 1 Median NaN NaN NaN 0 0 Median 1.3389 1.1703 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199700 530710 668970 0 0 0 1199700 530710 668970 0 0 0 0 0 0 0 0 0 0 0 0 29823 26 31360 155806 156760 156760 1 SEYNDQLTR VLNFNPFMAFNPDPKSEYNDQLTRATNMTV FNPDPKSEYNDQLTRATNMTVSAIRFLKTL K S E T R A 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 9 0 1124.5098 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 143 151 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.0010057 92.439 By MS/MS 1 1.7126 1.4852 NaN 1 Median NaN NaN NaN 0 0 Median 1.7126 1.4852 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2781600 976600 1805000 0 0 0 2781600 976600 1805000 0 0 0 0 0 0 0 0 0 0 0 0 29824 317 31361 155807 156761 156761 1 SFAAVIQALDGEMR SSLKTCYKYLNQTSRSFAAVIQALDGEMRN RSFAAVIQALDGEMRNAVCIFYLVLRALDT R S F M R N 3 1 0 1 0 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 14 0 1506.7501 E9PJG4;E9PNM1;A0A1W2PQ47;P37268 E9PJG4 53 66 FDFT1 Squalene synthase yes no 2 0.049388 24.343 By MS/MS 1 1.2049 1.0416 NaN 1 Median NaN NaN NaN 0 0 Median 1.2049 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3321100 1489900 1831200 0 0 0 3321100 1489900 1831200 0 0 0 0 0 0 0 0 0 0 0 0 29825 342 31362 155808 156762 156762 1 SFADINLYR TGEGFLCVFAINNSKSFADINLYREQIKRV AINNSKSFADINLYREQIKRVKDSDDVPMV K S F Y R E 1 1 1 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 9 0 1097.5506 P01111 P01111 89 97 NRAS GTPase NRas yes yes 2 0.0036742 74.127 By MS/MS By MS/MS 2 1 1.3009 1.1767 0.092702 2 Median 1.1968 1.1775 NaN 1 0 Median 1.4142 1.1759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7394700 3107200 4287400 6198100 2581000 3617100 1196500 526220 670300 0 0 0 0 0 0 0 0 0 0 0 0 29826 1831 31363 155809;155810;155811 156763;156764;156765 156764 3 SFAESGWR ______________________________ ______________________________ M S F W R S 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 2 0 1 0 0 0 0 8 0 938.42463 Q8N6S5 Q8N6S5 2 9 ARL6IP6 ADP-ribosylation factor-like protein 6-interacting protein 6 yes yes 2 0.0077093 66.682 By MS/MS By matching 2 1 0.93318 0.91565 6.5328 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91405 0.94874 8.7722 2 0 Median NaN NaN NaN 0 0 Median 0.94617 0.91565 NaN 1 0 Median NaN NaN NaN 0 0 Median 5682200 3065000 2617200 0 0 0 0 0 0 5102100 2771200 2330900 0 0 0 580080 293790 286280 0 0 0 29827 3389 31364 155812;155813;155814 156766;156767 156766 2 SFAFVGPSR KGIVNAVKDPDANGKSFAFVGPSRYLLFHL PDANGKSFAFVGPSRYLLFHLVKYIFAVAH K S F S R Y 1 1 0 0 0 0 0 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 9 0 966.49232 A0A3B3ISG8;Q16795;H3BRM9 A0A3B3ISG8 262 270 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.0008527 94.302 By MS/MS By matching 1 1 0.97214 0.86491 16.18 2 Median 0.82584 0.77141 NaN 1 0 Median 1.1444 0.96975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9631000 4597100 5033800 8564800 4155000 4409900 1066100 442180 623960 0 0 0 0 0 0 0 0 0 0 0 0 29828 424 31365 155815;155816 156768;156769 156768 2 SFAGAVSPQEEEEFR IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR SFAGAVSPQEEEEFRRLAALPNVYEVISKS R S F F R R 2 1 0 0 0 1 4 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 15 0 1681.7584 P33992;B1AHB1 P33992 309 323 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 2.3828E-10 114.72 By MS/MS By matching By matching By matching 2 1 1 1 0.76368 0.81649 19.177 5 Median 0.6157 0.60725 10.387 2 1 Median 0.99239 0.90044 NaN 1 0 Median 0.76368 0.81649 NaN 1 0 Median 0.96357 0.81763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10518000 6040100 4478000 7334900 4372900 2962000 849380 393280 456100 1902600 1052000 850640 431130 221900 209230 0 0 0 0 0 0 29829 2224 31366 155817;155818;155819;155820;155821 156770;156771 156771 2 SFAGAVSPQEEEEFRR IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR FAGAVSPQEEEEFRRLAALPNVYEVISKSI R S F R R L 2 2 0 0 0 1 4 1 0 0 0 0 0 2 1 2 0 0 0 1 0 0 16 1 1837.8595 P33992;B1AHB1 P33992 309 324 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 4.9473E-09 126.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 2 1 2 0.94497 0.87127 18.119 18 Median 0.72184 0.75535 7.0511 5 3 Median 1.0254 0.96101 10.748 5 1 Median 0.73309 0.84707 24.007 3 0 Median 1.1327 1.0036 16.688 2 0 Median 0.65663 0.71344 NaN 1 0 Median 1.2604 1.1268 11.325 2 0 Median 217230000 120280000 96957000 124950000 70712000 54235000 29913000 14239000 15674000 50947000 29164000 21783000 4625100 2155600 2469500 5889700 3637800 2252000 911210 367560 543650 29830 2224 31367 155822;155823;155824;155825;155826;155827;155828;155829;155830;155831;155832;155833;155834;155835;155836;155837;155838;155839 156772;156773;156774;156775;156776;156777;156778;156779;156780;156781;156782;156783;156784;156785 156776 14 SFAGNLNTYK MDERRFQDAVRLRGRSFAGNLNTYKRLAIK RLRGRSFAGNLNTYKRLAIKLPDDQIPKTN R S F Y K R 1 0 2 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1113.5455 Q01813;B1APP6 Q01813 386 395 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.00040525 122.52 By MS/MS By MS/MS 1 1 1.0765 0.96182 15.304 2 Median 1.1757 1.0717 NaN 1 0 Median 0.98557 0.86317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51631000 25843000 25789000 9723900 4742900 4981000 41908000 21100000 20808000 0 0 0 0 0 0 0 0 0 0 0 0 29831 2692 31368 155840;155841 156786;156787;156788;156789 156789 4 SFAGNLNTYKR MDERRFQDAVRLRGRSFAGNLNTYKRLAIK LRGRSFAGNLNTYKRLAIKLPDDQIPKTNC R S F K R L 1 1 2 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 1 1269.6466 Q01813;B1APP6 Q01813 386 396 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2;3 4.6792E-05 105.86 By MS/MS 4 1.1853 1.2157 10.34 4 Median 1.1853 1.2157 10.34 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20940000 9022700 11918000 20940000 9022700 11918000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29832 2692 31369 155842;155843;155844;155845 156790;156791;156792;156793;156794 156792 5 SFAPGMSTFR QHQPSASSILESLFRSFAPGMSTFRVLYNL ESLFRSFAPGMSTFRVLYNLEVLSSKLMPT R S F F R V 1 1 0 0 0 0 0 1 0 0 0 0 1 2 1 2 1 0 0 0 0 0 10 0 1099.5121 Q9UPU5 Q9UPU5 1164 1173 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 0.0037749 55.549 By MS/MS 1 0.95204 0.9149 NaN 1 Median 0.95204 0.9149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4463100 2534900 1928200 4463100 2534900 1928200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29833 4357 31370 155846 156795 156795 1 SFAVGMFK SDALTRKKPAKAESKSFAVGMFKGQLTTDQ PAKAESKSFAVGMFKGQLTTDQVFPYPSVL K S F F K G 1 0 0 0 0 0 0 1 0 0 0 1 1 2 0 1 0 0 0 1 0 0 8 0 885.44186 P49748;K7EQP4;K7EJW8 P49748 72 79 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.005683 74.415 By MS/MS By matching 1 1 1.2109 1.1084 18.205 2 Median 1.0201 0.97449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4374 1.2606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5728100 3129400 2598800 5618900 3083800 2535100 0 0 0 0 0 0 109200 45522 63677 0 0 0 0 0 0 29834 2394 31371 155847;155848 156796;156797 156796 2 SFDALNFVTMLK NDVVFVIDSGKVKEKSFDALNFVTMLKMVW KEKSFDALNFVTMLKMVWISKASAIQRKGR K S F L K M 1 0 1 1 0 0 0 0 0 0 2 1 1 2 0 1 1 0 0 1 0 0 12 0 1384.7061 Q9H6S0;D6RA70 Q9H6S0 713 724 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes no 2 0.0081325 38.086 By MS/MS 1 1.1061 1.0498 NaN 1 Median 1.1061 1.0498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2489200 1200000 1289100 2489200 1200000 1289100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29835 3977 31372 155849 156798;156799 156798 2 SFDAVLEALSR QGDTTAAARHFRVAKSFDAVLEALSRGEPV RVAKSFDAVLEALSRGEPVDLSCLPPPPDQ K S F S R G 2 1 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 11 0 1206.6245 Q6P1N0;K7EJY5 Q6P1N0 292 302 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 2 0.0054074 46.158 By MS/MS By MS/MS By matching 1 1 1 1.2335 1.1378 11.16 3 Median 1.0739 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2335 1.3277 NaN 1 0 Median 1.3001 1.1378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2850700 1348200 1502500 1668700 803180 865550 0 0 0 911190 422320 488860 270800 122700 148100 0 0 0 0 0 0 29836 3153 31373 155850;155851;155852 156800;156801 156800 2 SFDDPIVQTER NVRNTIHGFKKLHGRSFDDPIVQTERIRLP LHGRSFDDPIVQTERIRLPYELQKMPNGSA R S F E R I 0 1 0 2 0 1 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 11 0 1305.6201 O95757;E9PDE8;D6RJ96 O95757 74 84 HSPA4L Heat shock 70 kDa protein 4L yes no 2 3.2956E-05 94.692 By MS/MS By MS/MS By MS/MS 2 1 1 0.97148 0.96854 5.9311 3 Median 0.96273 0.92765 NaN 1 0 Median 1.116 0.96854 NaN 1 0 Median 0.97148 1.0431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19012000 8764700 10248000 13702000 6547300 7155200 2404900 1116500 1288500 2905100 1100900 1804200 0 0 0 0 0 0 0 0 0 29837 1790 31374 155853;155854;155855;155856 156802;156803;156804 156802 2 SFDFEIETK EISFVNFARGTTTTRSFDFEIETKQGTQYT GTTTTRSFDFEIETKQGTQYTFSSIEREEY R S F T K Q 0 0 0 1 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1114.5183 Q08945 Q08945 388 396 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.0017097 78.516 By matching By matching By matching By matching By MS/MS By matching 1 1 1 2 3 5 1.3105 1.2067 20.6 13 Median 1.0395 1.0061 NaN 1 0 Median 1.2305 1.1087 NaN 1 0 Median 1.5654 1.6719 NaN 1 0 Median 1.2502 1.1073 3.3548 2 0 Median 1.401 1.3391 22.627 3 0 Median 1.4501 1.2067 16.063 5 0 Median 27221000 11842000 15380000 3163500 1643500 1520000 594980 275580 319400 671660 241400 430260 433360 187240 246120 19110000 8148100 10962000 3247800 1346000 1901800 29838 2743 31375 155857;155858;155859;155860;155861;155862;155863;155864;155865;155866;155867;155868;155869 156805;156806;156807 156805 3 SFDLIHSPHGELK EIQRVTNIKTSAKIKSFDLIHSPHGELKAV IKSFDLIHSPHGELKAVFLLQNNLVELYSL K S F L K A 0 0 0 1 0 0 1 1 2 1 2 1 0 1 1 2 0 0 0 0 0 0 13 0 1478.7518 Q9UNX4 Q9UNX4 367 379 WDR3 WD repeat-containing protein 3 yes yes 3 0.00014438 71.241 By MS/MS By MS/MS 2 1 0.9362 1.0219 27.596 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80334 0.86827 23.046 2 0 Median 1.4859 1.277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23191000 12177000 11015000 0 0 0 0 0 0 19595000 10528000 9066200 3596700 1648100 1948600 0 0 0 0 0 0 29839 4351 31376 155870;155871;155872 156808;156809;156810 156809 3 SFDLLVK HQVPTENVQVHFTERSFDLLVKNLNGKSYS VQVHFTERSFDLLVKNLNGKSYSMIVNNLL R S F V K N 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 7 0 820.46945 Q9HB71 Q9HB71 112 118 CACYBP Calcyclin-binding protein yes yes 2 0.028199 50.966 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.3255 1.153 31.499 5 Median 1.254 1.1582 6.7949 2 0 Median NaN NaN NaN 0 0 Median 1.2299 1.153 NaN 1 0 Median 1.3834 1.1436 NaN 1 0 Median 2.1975 2.3226 NaN 1 0 Median NaN NaN NaN 0 0 Median 51405000 22804000 28601000 31441000 13881000 17561000 0 0 0 18274000 8268900 10005000 1330800 552340 778440 359300 101880 257420 0 0 0 29840 4016 31377 155873;155874;155875;155876;155877 156811;156812;156813;156814;156815;156816 156812 6 SFDPSAREPPGSTAGLPQEPK SPLEHILQTLFGKKKSFDPSAREPPGSTAG REPPGSTAGLPQEPKTTAEDGVPAPPLLDP K S F P K T 2 1 0 1 0 1 2 2 0 0 1 1 0 1 5 3 1 0 0 0 0 0 21 1 2167.0546 Q9BTC0 Q9BTC0 1327 1347 DIDO1 Death-inducer obliterator 1 yes yes 3 9.1928E-05 36.523 By MS/MS 2 0.3951 0.4654 13.461 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3951 0.4654 13.461 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24279000 15780000 8498900 0 0 0 0 0 0 24279000 15780000 8498900 0 0 0 0 0 0 0 0 0 29841 3824 31378 155878;155879 156817;156818 156817 2 SFDSASQVPNPAAAAIPR STSSEPTPTVKTLIKSFDSASQVPNPAAAA SASQVPNPAAAAIPRTPLSPSPMKTPPAAA K S F P R T 5 1 1 1 0 1 0 0 0 1 0 0 0 1 3 3 0 0 0 1 0 0 18 0 1797.901 A0A494C1J1;Q69YQ0;F8WAN1 A0A494C1J1 866 883 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 2 5.7566E-06 61.435 By MS/MS 1 0.33029 0.36325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33029 0.36325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6937300 5786000 1151300 0 0 0 0 0 0 6937300 5786000 1151300 0 0 0 0 0 0 0 0 0 29842 469 31379 155880 156819 156819 1 SFDSNAFTLLLR SESVQKGFQMLADPRSFDSNAFTLLLRAAF DPRSFDSNAFTLLLRAAFQSLLDAQADEAV R S F L R A 1 1 1 1 0 0 0 0 0 0 3 0 0 2 0 2 1 0 0 0 0 0 12 0 1382.7194 H0Y4W0;Q9UBI1;R4GN54;R4GMW6;H0Y6Z9;R4GN06;Q5T8Z1;R4GMX3 R4GMX3 19 30 COMMD3;COMMD3-BMI1 COMM domain-containing protein 3 no no 2 7.8145E-05 93.111 By MS/MS By matching 1 2 1.3715 1.164 7.7449 3 Median 1.0979 1.0357 NaN 1 0 Median 1.3949 1.1814 2.1061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4256700 2066000 2190700 3890800 1913200 1977600 365950 152820 213130 0 0 0 0 0 0 0 0 0 0 0 0 29843 4503;1149 31380 155881;155882;155883 156820;156821 156821 2 SFDWGYEER GEEAEGPGAGDGPPRSFDWGYEERSGAHSS GDGPPRSFDWGYEERSGAHSSASPPRSRSR R S F E R S 0 1 0 1 0 0 2 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 9 0 1187.4884 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 165 173 NELFE Negative elongation factor E yes no 2 0.0098224 48.794 By matching By MS/MS By matching 1 1 2 1.0323 0.89459 9.0999 4 Median NaN NaN NaN 0 0 Median 1.024 0.91349 NaN 1 0 Median 0.8567 0.86276 NaN 1 0 Median 1.1202 0.96066 13.032 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3871100 1850200 2020800 0 0 0 236500 107740 128760 2952900 1441200 1511700 681680 301320 380360 0 0 0 0 0 0 29844 2059 31381 155884;155885;155886;155887 156822 156822 1 SFEAPATINSASLHPEK RSIAFHSAVSLDPIKSFEAPATINSASLHP EAPATINSASLHPEKEFLVAGGEDFKLYKY K S F E K E 3 0 1 0 0 0 2 0 1 1 1 1 0 1 2 3 1 0 0 0 0 0 17 0 1797.8897 Q9Y3F4 Q9Y3F4 219 235 STRAP Serine-threonine kinase receptor-associated protein yes yes 2;3 5.0054E-14 111.39 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 0.90177 0.83379 11.689 9 Median 1.0092 0.9373 1.4125 2 0 Median 0.90528 0.78101 9.2488 2 0 Median 0.90177 0.93118 9.1555 3 0 Plateau 0.88727 0.75005 14.282 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72788000 37807000 34981000 26046000 12544000 13502000 4081400 2105400 1976000 37995000 20704000 17291000 4665100 2454000 2211100 0 0 0 0 0 0 29845 4429 31382 155888;155889;155890;155891;155892;155893;155894;155895;155896 156823;156824;156825;156826;156827;156828;156829;156830;156831;156832;156833 156824 11 SFEAPATINSASLHPEKEFLVAGGEDFK RSIAFHSAVSLDPIKSFEAPATINSASLHP HPEKEFLVAGGEDFKLYKYDYNSGEELESY K S F F K L 4 0 1 1 0 0 4 2 1 1 2 2 0 3 2 3 1 0 0 1 0 0 28 1 2990.4662 Q9Y3F4 Q9Y3F4 219 246 STRAP Serine-threonine kinase receptor-associated protein yes yes 4 0.013929 16.447 By MS/MS By matching By MS/MS 1 1 1 0.85459 0.79675 21.048 3 Plateau 0.85459 0.79675 NaN 1 0 Median 0.65682 0.5964 NaN 1 0 Median 0.82417 0.89811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11075000 5632800 5442600 6077400 3106600 2970800 1182400 724710 457720 3815600 1801500 2014100 0 0 0 0 0 0 0 0 0 29846 4429 31383 155897;155898;155899 156834;156835 156834 2 SFEAPIK VFWVFGTNVMVTVAKSFEAPIKLVFPQDLL NVMVTVAKSFEAPIKLVFPQDLLEKGLEAN K S F I K L 1 0 0 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 7 0 790.4225 A0A3B3IUB5;Q8TCT9;A0A075B6F6;A0A0S2Z6F0;A0A3B3IT72 A0A3B3IUB5 278 284 HM13 Minor histocompatibility antigen H13 yes no 2 0.030618 64.776 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13850000 0 13850000 0 0 0 13850000 0 13850000 0 0 0 0 0 0 0 0 0 0 0 0 29847 444 31384 155900;155901 156836;156837 156837 2 SFEDIHHYR TGEGFLCVFAINNTKSFEDIHHYREQIKRV AINNTKSFEDIHHYREQIKRVKDSEDVPMV K S F Y R E 0 1 0 1 0 0 1 0 2 1 0 0 0 1 0 1 0 0 1 0 0 0 9 0 1202.5469 P01116 P01116 89 97 KRAS GTPase KRas;GTPase KRas, N-terminally processed yes yes 3 0.00080961 68.224 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1 1.2332 1.106 21.066 6 Median 0.85665 0.808 NaN 1 0 Median 1.3911 1.1889 NaN 1 0 Median 0.86642 0.83108 NaN 1 0 Median 1.3154 1.0874 NaN 1 0 Median 1.1562 1.1249 NaN 1 0 Median 1.7037 1.3863 NaN 1 0 Median 11774000 5532800 6240700 2549400 1158100 1391300 611840 250640 361190 5870400 3031300 2839100 1314100 560750 753300 951140 366540 584600 476640 165390 311250 29848 1833 31385 155902;155903;155904;155905;155906;155907 156838;156839;156840;156841;156842;156843 156840 4 SFEDIHQYR TGEGFLCVFAINNTKSFEDIHQYREQIKRV AINNTKSFEDIHQYREQIKRVKDSDDVPMV K S F Y R E 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 0 9 0 1193.5465 P01112 P01112 89 97 HRAS GTPase HRas;GTPase HRas, N-terminally processed yes yes 2 0.0023677 72.485 By matching By MS/MS 1 1 0.97271 0.8808 10.721 2 Median 0.82786 0.8165 NaN 1 0 Median 1.1429 0.95017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2122700 1093800 1028900 851510 455250 396260 1271200 638550 632610 0 0 0 0 0 0 0 0 0 0 0 0 29849 1832 31386 155908;155909 156844 156844 1 SFEEAFQK GSCMKSVGEVMGIGRSFEEAFQKALRMVDE EVMGIGRSFEEAFQKALRMVDENCVGFDHT R S F Q K A 1 0 0 0 0 1 2 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 8 0 984.45526 F8VPD4;P27708 F8VPD4 708 715 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0035231 91.041 By MS/MS By MS/MS 1 2 1.0551 0.9348 30.065 3 Median 1.3516 1.2978 NaN 1 0 Median 0.87076 0.8158 19.257 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17899000 8186800 9712500 5151800 2022900 3128900 12747000 6163900 6583500 0 0 0 0 0 0 0 0 0 0 0 0 29850 1057 31387 155910;155911;155912 156845;156846;156847 156847 3 SFEEEFGTASDKER CEEKEERLMLLESWRSFEEEFGTASDKERV RSFEEEFGTASDKERVDKLMPEKVKKRRKV R S F E R V 1 1 0 1 0 0 4 1 0 0 0 1 0 2 0 2 1 0 0 0 0 0 14 1 1630.7111 Q5JY65;Q9BZJ0 Q5JY65 748 761 CRNKL1 Crooked neck-like protein 1 yes no 3 0.00066643 58.071 By MS/MS 1 0.8626 0.91581 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8626 0.91581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7238400 3927500 3310900 0 0 0 0 0 0 7238400 3927500 3310900 0 0 0 0 0 0 0 0 0 29851 3061 31388 155913 156848 156848 1 SFEEKVENLK ITKKLEDVKNSPTFKSFEEKVENLKGSPKN SPTFKSFEEKVENLKGSPKNVESFASMLRH K S F L K G 0 0 1 0 0 0 3 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 10 1 1221.6241 H0YC42;P55327;E5RK35 H0YC42 176 185 TPD52 Tumor protein D52 no no 2 0.0031689 96.331 By MS/MS 1 0.95132 0.87042 NaN 1 Median NaN NaN NaN 0 0 Median 0.95132 0.87042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943100 1445900 1497200 0 0 0 2943100 1445900 1497200 0 0 0 0 0 0 0 0 0 0 0 0 29852 1172;2499 31389 155914 156849 156849 1 SFENDAQSSDNINFLK FFIEFYSTCLEEYKKSFENDAQSSDNINFL FENDAQSSDNINFLKVQWSSRQLPTLKPIL K S F L K V 1 0 3 2 0 1 1 0 0 1 1 1 0 2 0 3 0 0 0 0 0 0 16 0 1827.8275 O15357;A0A0A0MTP6 O15357 780 795 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 8.0983E-10 103.22 By MS/MS By matching By matching 2 1 1 1.0646 1.01 24.301 4 Median 0.9649 0.94381 14.795 2 0 Median 1.6693 1.5016 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0775 0.97342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8281300 4294500 3986800 7649100 4022500 3626600 497090 199210 297870 0 0 0 135100 72829 62272 0 0 0 0 0 0 29853 1539 31390 155915;155916;155917;155918 156850;156851 156850 2 SFENIQNWMK GAMGIILVYDITDEKSFENIQNWMKSIKEN ITDEKSFENIQNWMKSIKENASAGVERLLL K S F M K S 0 0 2 0 0 1 1 0 0 1 0 1 1 1 0 1 0 1 0 0 0 0 10 0 1295.5969 P51153;A0A087WWB9 P51153 95 104 RAB13 Ras-related protein Rab-13 yes no 2 0.03138 47.082 By MS/MS 1 1.2353 1.1504 NaN 1 Median 1.2353 1.1504 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7878600 3134600 4744000 7878600 3134600 4744000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29854 2430 31391 155919 156852 156852 1 SFENISK GAMGIMLVYDITNGKSFENISKWLRNIDEH VYDITNGKSFENISKWLRNIDEHANEDVER K S F S K W 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 7 0 823.40758 P61026 P61026 96 102 RAB10 Ras-related protein Rab-10 yes yes 2 0.059615 37.558 By MS/MS By matching 1 1 1.0413 0.94244 2.2314 2 Median 0.97084 0.92768 NaN 1 0 Median 1.1168 0.95743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470400 1160000 1310400 2049500 956590 1092900 420960 203380 217580 0 0 0 0 0 0 0 0 0 0 0 0 29855 2540 31392 155920;155921 156853 156853 1 SFENKPPAHIAASHLSEPAKPAHSQNQSNFSSYSSK DEEYYRKQLSYFDRRSFENKPPAHIAASHL AHSQNQSNFSSYSSKGKPPEADGVDRSFGE R S F S K G 5 0 3 0 0 2 2 0 3 1 1 3 0 2 4 9 0 0 1 0 0 0 36 2 3879.8565 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 1274 1309 TJP1 Tight junction protein ZO-1 yes no 5 1.4832E-05 30.459 By MS/MS 1 0.36576 0.42376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36576 0.42376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6205100 3924100 2280900 0 0 0 0 0 0 6205100 3924100 2280900 0 0 0 0 0 0 0 0 0 29856 104 31393 155922 156854 156854 1 SFENSLGINVPR LNVIQLETAVGAAIKSFENSLGINVPRSRF AIKSFENSLGINVPRSRFLPVKTTSDLLLV K S F P R S 0 1 2 0 0 0 1 1 0 1 1 0 0 1 1 2 0 0 0 1 0 0 12 0 1331.6834 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 378 389 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 0.00040747 145.17 By MS/MS By matching 1 1 1.0573 0.9567 6.9562 2 Median 1.0539 1.0049 NaN 1 0 Median 1.0608 0.91078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14913000 7129000 7783700 12384000 5873700 6510700 2528300 1255300 1273000 0 0 0 0 0 0 0 0 0 0 0 0 29857 86 31394 155923;155924 156855 156855 1 SFEQLVNLQK EGKDYSKEPSKEDRKSFEQLVNLQKTLLEK KEDRKSFEQLVNLQKTLLEKASQEGRSLRN K S F Q K T 0 0 1 0 0 2 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1204.6452 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C179 Q86WJ1 591 600 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.0013439 84.743 By MS/MS 1 1.2434 1.3619 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2434 1.3619 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7933300 3667900 4265300 0 0 0 0 0 0 7933300 3667900 4265300 0 0 0 0 0 0 0 0 0 29858 3293 31395 155925 156856 156856 1 SFESTVGQGSDTYIYIFR KELALVKRLKPLFNKSFESTVGQGSDTYIY STVGQGSDTYIYIFRVCREAGNHTSGAGLV K S F F R V 0 1 0 1 0 1 1 2 0 2 0 0 0 2 0 3 2 0 2 1 0 0 18 0 2068.9742 P20645;F5GX30;F5GXE0;H0YGE9;F5GXU0;F5H883 P20645 59 76 M6PR Cation-dependent mannose-6-phosphate receptor yes no 2 0.00028408 41.54 By MS/MS By matching By matching 2 1 1 1.0492 1.0721 17.8 4 Median 0.9441 0.95099 21.392 2 0 Median 1.3947 1.2482 NaN 1 0 Median 1.0188 1.039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2775800 1377800 1398000 2202300 1124400 1077900 262670 111510 151160 310860 141880 168980 0 0 0 0 0 0 0 0 0 29859 2082 31396 155926;155927;155928;155929 156857 156857 1 SFEVEEVETPNSTPPR RLRRLGDSSGPALKRSFEVEEVETPNSTPP FEVEEVETPNSTPPRRVQTPLLRATVASST R S F P R R 0 1 1 0 0 0 4 0 0 0 0 0 0 1 3 2 2 0 0 2 0 0 16 0 1816.8479 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 30 45 SEPT9 Septin-9 yes no 2 2.1098E-10 108.37 By MS/MS 2 0.849 0.72146 1.7763 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.849 0.72146 1.7763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8188500 4278900 3909600 0 0 0 0 0 0 0 0 0 8188500 4278900 3909600 0 0 0 0 0 0 29860 4276 31397 155930;155931 156858;156859;156860;156861;156862;156863;156864 156863 7 SFEVNLR LLQPFLEVTKEAFDRSFEVNLRAVIQVSQI VTKEAFDRSFEVNLRAVIQVSQIVARGLIA R S F L R A 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 7 0 863.45012 J3KS22;Q7Z4W1;J3QS36;J3KRZ4;J3QS45;J3KSZ5;J3QL34 J3KS22 101 107 DCXR L-xylulose reductase yes no 2 0.005702 95.957 By MS/MS By MS/MS 2 2 1.2373 1.1261 38.405 4 Median 0.99916 0.96878 48.723 2 0 Median 1.4205 1.2213 38.916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22225000 8676500 13548000 18622000 7425000 11197000 3602800 1251500 2351300 0 0 0 0 0 0 0 0 0 0 0 0 29861 1330 31398 155932;155933;155934;155935 156865;156866;156867;156868 156865 4 SFEWLSQMR DVTRSLIKSKIDNAKSFEWLSQMRFYFDPK KIDNAKSFEWLSQMRFYFDPKQTDVLQQLS K S F M R F 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 2 0 1 0 0 0 0 9 0 1182.5492 Q14204 Q14204 1835 1843 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 4 2 1.1793 1.0944 23.098 14 Median 1.0877 1.0724 8.3454 2 0 Median 1.2052 1.0052 2.2682 3 0 Median 1.0945 1.1457 7.6619 3 0 Median 1.3233 1.1491 17.761 4 0 Median 0.88807 0.90105 65.203 2 0 Median NaN NaN NaN 0 0 Median 99569000 46493000 53076000 41651000 19852000 21799000 9816900 4389400 5427500 43135000 19901000 23234000 3084000 1342900 1741100 1882000 1007600 874320 0 0 0 29862 2865 31399;31400 155936;155937;155938;155939;155940;155941;155942;155943;155944;155945;155946;155947;155948;155949 156869;156870;156871;156872;156873;156874;156875;156876;156877;156878;156879;156880;156881 156870 1560 13 SFFHQHYLGGQEPTPSNIR HGHFQPLQRLQPQLRSFFHQHYLGGQEPTP QHYLGGQEPTPSNIRMATHTLITGLEEYVR R S F I R M 0 1 1 0 0 2 1 2 2 1 1 0 0 2 2 2 1 0 1 0 0 0 19 0 2214.0606 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47 P46379 787 805 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3;4 2.1307E-13 99.092 By MS/MS 2 0.81502 0.78493 2.7657 2 Median 0.81502 0.78493 2.7657 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38534000 20552000 17982000 38534000 20552000 17982000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29863 8 31401 155950;155951 156882;156883;156884 156883 3 SFFNAQFGSLFR QEWKKERKEMREMTKSFFNAQFGSLFRTDQ MTKSFFNAQFGSLFRTDQNPTYFLRRLSRF K S F F R T 1 1 1 0 0 1 0 1 0 0 1 0 0 4 0 2 0 0 0 0 0 0 12 0 1419.6935 Q86UY8;H7C3S8 Q86UY8 470 481 NT5DC3 5-nucleotidase domain-containing protein 3 yes no 2 0.010147 37.191 By MS/MS By matching 1 1 0.94075 0.94631 17.639 2 Median 1.0856 1.072 NaN 1 0 Median 0.8152 0.83534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2009500 968490 1041000 1177800 581240 596520 831710 387240 444460 0 0 0 0 0 0 0 0 0 0 0 0 29864 3282 31402 155952;155953 156885 156885 1 SFFSVESGTK VFRQMDFPGESSNNRSFFSVESGTKMSGLH SSNNRSFFSVESGTKMSGLHISGGQSVLEP R S F T K M 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 3 1 0 0 1 0 0 10 0 1087.5186 Q14966 Q14966 283 292 ZNF638 Zinc finger protein 638 yes yes 2 0.00033784 85.731 By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 1.0485 1.0267 12.399 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94453 1.0436 NaN 1 0 Median 1.0451 0.94111 NaN 1 0 Median 1.052 1.106 NaN 1 0 Median 1.172 1.01 17.805 3 0 Median 15416000 7413900 8002400 0 0 0 0 0 0 10195000 5008200 5186900 365300 171200 194100 3636600 1668100 1968500 1219300 566400 652880 29865 2903 31403 155954;155955;155956;155957;155958;155959 156886;156887;156888;156889 156887 4 SFFTAYHR EFELAIALMFGGFPRSFFTAYHRKIPKAPG MFGGFPRSFFTAYHRKIPKAPGFDQRLLLY R S F H R K 1 1 0 0 0 0 0 0 1 0 0 0 0 2 0 1 1 0 1 0 0 0 8 0 1027.4876 Q9H479 Q9H479 258 265 FN3K Fructosamine-3-kinase yes yes 2 2.2066E-06 124.89 By MS/MS By MS/MS By MS/MS 1 1 1 1.2658 1.2497 20.894 3 Median 0.98135 0.91772 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2658 1.2497 NaN 1 1 Median 1.6383 1.3667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24448000 11333000 13115000 10527000 5579400 4947300 0 0 0 6350600 2796600 3554000 7571000 2956900 4614100 0 0 0 0 0 0 29866 3962 31404 155960;155961;155962 156890;156891;156892 156891 3 SFFTPGKPK KNFSNTKNYLPPEMKSFFTPGKPKTTNVLG LPPEMKSFFTPGKPKTTNVLGAVNKPLSSA K S F P K T 0 0 0 0 0 0 0 1 0 0 0 2 0 2 2 1 1 0 0 0 0 0 9 1 1007.544 Q9NTI5;A9IYQ1 Q9NTI5 1118 1126 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.01951 75.213 By MS/MS 1 0.57608 0.66118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57608 0.66118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5022900 3130100 1892800 0 0 0 0 0 0 5022900 3130100 1892800 0 0 0 0 0 0 0 0 0 29867 4107 31405 155963 156893 156893 1 SFGGGMNLSSK ICLMVANTLIGNWDRSFGGGMNLSSKLAQL NWDRSFGGGMNLSSKLAQLTCHGNLCHSFQ R S F S K L 0 0 1 0 0 0 0 3 0 0 1 1 1 1 0 3 0 0 0 0 0 0 11 0 1083.5019 O75439;G3V0E4 O75439 326 336 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.0020677 78.655 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1591 1.0779 6.115 4 Median 1.0383 0.96189 NaN 1 0 Median 1.2695 1.078 NaN 1 0 Median 1.1198 1.1003 NaN 1 1 Median 1.1998 1.0779 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34393000 16306000 18087000 12584000 6977900 5606000 7398200 3231500 4166700 5712800 2440800 3272000 8698000 3655900 5042200 0 0 0 0 0 0 29868 1673 31406 155964;155965;155966;155967 156894;156895;156896 156896 3 SFGIEDKDK ______________________________ SILGVRSFGIEDKDKQIITFFSPLTILVGP R S F D K Q 0 0 0 2 0 0 1 1 0 1 0 2 0 1 0 1 0 0 0 0 0 0 9 1 1037.5029 Q92878;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;E9PM98;A0A494BZW0 Q92878 14 22 RAD50 DNA repair protein RAD50 yes no 2 0.0044576 89.355 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2259 1.1007 5.9243 4 Linear NaN NaN NaN 0 0 Median 1.2044 1.123 NaN 1 0 Median 1.0695 1.2222 NaN 1 0 Median 1.1503 1.0769 NaN 1 0 Median 1.0333 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median 7434900 3293600 4141300 0 0 0 3763300 1753800 2009400 1222200 439420 782820 1549800 705090 844680 899600 395220 504380 0 0 0 29869 3561 31407 155968;155969;155970;155971 156897;156898;156899;156900 156897 4 SFGQTPSQLLIEPHPPR ITDPVLREAVEAQIRSFGQTPSQLLIEPHP GQTPSQLLIEPHPPRGSAMQVSPLMFTDKA R S F P R G 0 1 0 0 0 2 1 1 1 1 2 0 0 1 4 2 1 0 0 0 0 0 17 0 1902.9952 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A3B3IS13;A0A3B3ISK3 E9PEM5 2462 2478 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 0.0024816 42.647 By MS/MS 1 0.4852 0.52448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4852 0.52448 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4355000 2846800 1508200 0 0 0 0 0 0 4355000 2846800 1508200 0 0 0 0 0 0 0 0 0 29870 470 31408 155972 156901 156901 1 SFGSAQEFAWAHDSSEYAIR DGEYIIYTAMALRNKSFGSAQEFAWAHDSS QEFAWAHDSSEYAIRESNSIVKIFKNFKEK K S F I R E 4 1 0 1 0 1 2 1 1 1 0 0 0 2 0 4 0 1 1 0 0 0 20 0 2258.0029 P35606;H0Y938 P35606 387 406 COPB2 Coatomer subunit beta yes no 2;3 1.4264E-10 87.49 By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 1.0765 1.0172 16.355 10 Median 1.0587 1.0293 1.8316 4 1 Median 1.0119 0.91764 8.6849 3 0 Median 1.4382 1.5365 NaN 1 0 Median 1.1912 1.02 4.7707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61250000 28213000 33037000 53143000 24632000 28511000 2693600 1252700 1440900 4664900 2018500 2646400 748430 309860 438570 0 0 0 0 0 0 29871 2246 31409 155973;155974;155975;155976;155977;155978;155979;155980;155981;155982 156902;156903;156904;156905;156906;156907;156908;156909;156910;156911;156912 156902 11 SFGSTCQLSEK TFDSQTKENMTLQPKSFGSTCQLSEKFIKA LQPKSFGSTCQLSEKFIKAAIGCGIVESIL K S F E K F 0 0 0 0 1 1 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 11 0 1242.5551 P11388 P11388 387 397 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.029298 49.35 By MS/MS 1 1.672 1.4327 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.672 1.4327 NaN 1 1 Median 2295900 789770 1506100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2295900 789770 1506100 29872 1963 31410 155983 156913 156913 1 SFGTRPLSSGFSPEEAQQQDEEFEK YSSGGSSRTLDAQDRSFGTRPLSSGFSPEE FSPEEAQQQDEEFEKKIPSVEDSLGEGSRD R S F E K K 1 1 0 1 0 3 5 2 0 0 1 1 0 3 2 4 1 0 0 0 0 0 25 1 2829.2729 Q9C0C2 Q9C0C2 976 1000 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 3 2.356E-19 81.888 By MS/MS By matching By MS/MS 1 1 1 0.62177 0.6256 7.2137 3 Median 0.62177 0.62554 NaN 1 0 Median 0.7366 0.70882 NaN 1 0 Median 0.52218 0.6256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14222000 8385300 5837100 8889900 5313700 3576300 837150 397420 439730 4495300 2674200 1821100 0 0 0 0 0 0 0 0 0 29873 3903 31411 155984;155985;155986 156914;156915 156914 2 SFHHVTHDLVR KDEERAEEIVAAQEKSFHHVTHDLVREVTS AQEKSFHHVTHDLVREVTSPNSTVRKQAMH K S F V R E 0 1 0 1 0 0 0 0 3 0 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1346.6844 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1236 1246 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00052727 56.225 By MS/MS By MS/MS By MS/MS 3 1 1 1.0462 1.1371 23.126 5 Linear NaN NaN NaN 0 0 Median 1.1817 0.9945 22.431 3 0 Plateau 1.0462 1.1349 NaN 1 0 Median 1.1528 1.0036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7896200 3699200 4197000 0 0 0 2170000 1067300 1102700 3942800 1836800 2106000 1783400 795100 988330 0 0 0 0 0 0 29874 991 31412 155987;155988;155989;155990;155991 156916;156917;156918;156919;156920;156921 156921 6 SFHILAIATK TDPVHDIAFAPNLGRSFHILAIATKDVRIF PNLGRSFHILAIATKDVRIFTLKPVRKELT R S F T K D 2 0 0 0 0 0 0 0 1 2 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1099.639 Q96EE3;K7ELV2 Q96EE3 234 243 SEH1L Nucleoporin SEH1 yes no 2 0.0038258 55.37 By MS/MS 1 1.3427 1.1374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3427 1.1374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3285300 1298400 1986900 0 0 0 0 0 0 0 0 0 3285300 1298400 1986900 0 0 0 0 0 0 29875 3634 31413 155992 156922 156922 1 SFHNELLTQLEQK EVHRQIQNQLEEMLKSFHNELLTQLEQKVE LKSFHNELLTQLEQKVELDSRYLSAALKKY K S F Q K V 0 0 1 0 0 2 2 0 1 0 3 1 0 1 0 1 1 0 0 0 0 0 13 0 1585.81 Q9UQB8;I3L4C2;I3L0M4;I3L3J7;I3L327;I3L2J6;I3L113;I3L526;I3L125;I3L1C8;I3L2M4 Q9UQB8 96 108 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 3 0.0030282 50.222 By MS/MS 1 2.3978 2.3284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3978 2.3284 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13103000 4402400 8700100 0 0 0 0 0 0 13103000 4402400 8700100 0 0 0 0 0 0 0 0 0 29876 4361 31414 155993 156923 156923 1 SFHSFYQLLQGGSEQMLR LLEKSRVIVQQPGERSFHSFYQLLQGGSEQ SFYQLLQGGSEQMLRSLHLQKSLSSYNYIH R S F L R S 0 1 0 0 0 3 1 2 1 0 3 0 1 2 0 3 0 0 1 0 0 0 18 0 2127.0208 K7EIG7;O94832;J3QRN6;J3KRL0 K7EIG7 112 129 MYO1D Unconventional myosin-Id yes no 3 0.0002045 49.049 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.92899 0.97359 17.684 5 Median 0.79954 0.80238 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91978 0.98333 1.4079 2 2 Median 1.024 0.9127 NaN 1 0 Median 1.225 1.3001 NaN 1 0 Median NaN NaN NaN 0 0 Median 7842200 3792600 4049600 1278400 629250 649140 0 0 0 4166900 2160000 2006900 77802 38381 39421 2319100 964970 1354100 0 0 0 29877 1359 31415 155994;155995;155996;155997;155998 156924;156925;156926;156927;156928 156926 5 SFIAEMTIYIK QGEYKYTQVGPDHNRSFIAEMTIYIKQLGR DHNRSFIAEMTIYIKQLGRRIFAREHGSNK R S F I K Q 1 0 0 0 0 0 1 0 0 3 0 1 1 1 0 1 1 0 1 0 0 0 11 0 1314.6894 Q08211 Q08211 210 220 DHX9 ATP-dependent RNA helicase A yes yes 2 0.002804 57.598 By matching By MS/MS By matching By matching 1 1 1 1 1.4412 1.3795 94.347 4 Median 7.5527 7.6279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0663 1.1418 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93186 0.96205 NaN 1 0 Median 1.9477 1.6667 NaN 1 0 Median 12724000 5579700 7144600 1863400 263710 1599700 0 0 0 8154900 3632100 4522800 0 0 0 2457300 1608400 848900 248730 75470 173260 29878 2736 31416 155999;156000;156001;156002 156929 156929 1427 1 SFIPSLVEK DVMIHPVTNRPADKRSFIPSLVEKEKVSRM RPADKRSFIPSLVEKEKVSRMVHAIKMGWI R S F E K E 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 9 0 1018.5699 Q14137;A0A075B729 Q14137 245 253 BOP1 Ribosome biogenesis protein BOP1 yes no 2 0.0070414 52.716 By MS/MS By matching 1 4 1.1518 1.0633 7.8789 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0477 1.0834 NaN 1 0 Median 1.2105 1.0056 8.2706 4 0 Median 5678600 2649300 3029300 0 0 0 0 0 0 0 0 0 0 0 0 4323100 2024200 2298900 1355500 625100 730400 29879 2856 31417 156003;156004;156005;156006;156007 156930;156931 156931 2 SFIPSLVEKEK DVMIHPVTNRPADKRSFIPSLVEKEKVSRM ADKRSFIPSLVEKEKVSRMVHAIKMGWIQP R S F E K V 0 0 0 0 0 0 2 0 0 1 1 2 0 1 1 2 0 0 0 1 0 0 11 1 1275.7075 Q14137;A0A075B729 Q14137 245 255 BOP1 Ribosome biogenesis protein BOP1 yes no 2;3 0.0016887 71.349 By matching By matching By matching By MS/MS By matching 1 1 1 4 2 0.93738 1.05 61.078 9 Median 1.1511 1.078 NaN 1 0 Median 0.16795 0.17827 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5114 1.2291 NaN 1 0 Median 1.0167 1.0996 10.222 4 0 Median 0.81898 0.73838 1.8852 2 0 Median 20614000 10798000 9815800 2016400 756260 1260100 2829100 2353100 476030 0 0 0 296410 139720 156690 14850000 7248200 7601500 622190 300720 321470 29880 2856 31418 156008;156009;156010;156011;156012;156013;156014;156015;156016 156932;156933;156934 156932 3 SFITTDVNPYYDSFVR IQDLKRMGLKVDWRRSFITTDVNPYYDSFV FITTDVNPYYDSFVRWQFLTLRERNKIKFG R S F V R W 0 1 1 2 0 0 0 0 0 1 0 0 0 2 1 2 2 0 2 2 0 0 16 0 1922.905 Q9P2J5 Q9P2J5 204 219 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 1.1192E-09 100.56 By MS/MS By MS/MS By MS/MS 1 2 1 0.91232 0.9382 13.906 4 Median 0.9399 0.90406 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96272 1.06 12.015 2 0 Median NaN NaN NaN 0 0 Median 0.77943 0.83237 NaN 1 0 Median NaN NaN NaN 0 0 Median 33301000 16342000 16959000 27712000 13588000 14124000 0 0 0 4374400 2020700 2353700 0 0 0 1215200 733360 481820 0 0 0 29881 4224 31419 156017;156018;156019;156020 156935;156936;156937;156938;156939 156936 5 SFLDSGYR AKAVAGNISDPGLQKSFLDSGYRILGAVAK SDPGLQKSFLDSGYRILGAVAKVREAFQPQ K S F Y R I 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 2 0 0 1 0 0 0 8 0 943.43995 P18206 P18206 816 823 VCL Vinculin yes yes 2 0.0024363 119.89 By MS/MS By MS/MS By matching 2 1 1 1.095 1.0033 9.58 4 Median 1.095 1.0666 1.206 2 0 Median 1.14 0.9519 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0172 0.87669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32019000 15323000 16696000 19201000 9256400 9944800 12325000 5805600 6519400 0 0 0 492750 260990 231770 0 0 0 0 0 0 29882 2057 31420 156021;156022;156023;156024 156940;156941;156942;156943 156941 4 SFLEDIR KLKGPQKFQFDGDKKSFLEDIRKALYASKI FQFDGDKKSFLEDIRKALYASKIISYAQGF K S F I R K 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 878.44978 P52209;K7ELN9 P52209 318 324 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.043995 43.124 By MS/MS By matching By matching 1 1 1 1.0135 1.0093 7.4749 3 Median 1.0115 1.0093 NaN 1 0 Median 1.3261 1.1452 NaN 1 0 Median 1.0135 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5507800 2673100 2834800 2352800 1188000 1164800 2018300 844450 1173800 1136800 640640 496150 0 0 0 0 0 0 0 0 0 29883 2447 31421 156025;156026;156027 156944 156944 1 SFLEDIRK KLKGPQKFQFDGDKKSFLEDIRKALYASKI QFDGDKKSFLEDIRKALYASKIISYAQGFM K S F R K A 0 1 0 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 1 1006.5447 P52209;K7ELN9 P52209 318 325 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.007248 77.741 By MS/MS 1 0.6692 0.66578 NaN 1 Median 0.6692 0.66578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26799000 13564000 13235000 26799000 13564000 13235000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29884 2447 31422 156028 156945 156945 1 SFLEDTTPAR VQSVEDFVPDDRLDRSFLEDTTPARDEKKV DRLDRSFLEDTTPARDEKKVGAKAAQQDSD R S F A R D 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 1 2 0 0 0 0 0 10 0 1135.551 Q3YEC7;F2Z2T0;G3V154 Q3YEC7 402 411 RABL6 Rab-like protein 6 yes no 2 0.0011606 67.993 By MS/MS 2 1.0261 0.88737 16.438 2 Median NaN NaN NaN 0 0 Median 1.0261 0.88737 16.438 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3956500 1820600 2135900 0 0 0 3956500 1820600 2135900 0 0 0 0 0 0 0 0 0 0 0 0 29885 3014 31423 156029;156030 156946;156947 156946 2 SFLEDTTPARDEKK VQSVEDFVPDDRLDRSFLEDTTPARDEKKV RSFLEDTTPARDEKKVGAKAAQQDSDSDGE R S F K K V 1 1 0 2 0 0 2 0 0 0 1 2 0 1 1 1 2 0 0 0 0 0 14 2 1635.8104 Q3YEC7;F2Z2T0;G3V154 Q3YEC7 402 415 RABL6 Rab-like protein 6 yes no 3 0.068878 11.915 By MS/MS 1 0.86668 0.98511 NaN 1 Median 0.86668 0.98511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2513200 1437900 1075300 2513200 1437900 1075300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29886 3014 31424 156031 156948 156948 1 SFLEEVLASGLHSR GVRIVLGGTTVHNTKSFLEEVLASGLHSRS KSFLEEVLASGLHSRSKESSQVTSRSASRR K S F S R S 1 1 0 0 0 0 2 1 1 0 3 0 0 1 0 3 0 0 0 1 0 0 14 0 1543.7995 A0A087WU65;A0A2R8YE10;Q9NRW7 A0A087WU65 419 432 VPS45 Vacuolar protein sorting-associated protein 45 yes no 2;3 0.0003072 73.781 By MS/MS By matching By matching 2 1 1 1.3681 1.2445 17.07 4 Median 1.2489 1.1886 11.615 2 0 Median 1.3868 1.2002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8581 1.6321 NaN 1 0 Median 29599000 13093000 16505000 23798000 10655000 13143000 5484600 2336700 3148000 0 0 0 0 0 0 0 0 0 316280 101650 214630 29887 27 31425 156032;156033;156034;156035 156949;156950;156951 156949 3 SFLESIDDALAEK DVRRVLLQAFDVVERSFLESIDDALAEKAS ERSFLESIDDALAEKASLQSQLPEGVPQHQ R S F E K A 2 0 0 2 0 0 2 0 0 1 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1436.7035 Q15750 Q15750 116 128 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes yes 2 0.0036405 43.512 By MS/MS 2 1.2122 1.041 4.2804 2 Median NaN NaN NaN 0 0 Median 1.2122 1.041 4.2804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4563600 1884000 2679600 0 0 0 4563600 1884000 2679600 0 0 0 0 0 0 0 0 0 0 0 0 29888 2967 31426 156036;156037 156952 156952 1 SFLIWVNEEDHTR RDWPDARGIWHNNEKSFLIWVNEEDHTRVI EKSFLIWVNEEDHTRVISMEKGGNMKRVFE K S F T R V 0 1 1 1 0 0 2 0 1 1 1 0 0 1 0 1 1 1 0 1 0 0 13 0 1644.7896 P12532;F8WCN3 P12532 257 269 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial yes no 3 0.00030089 59.185 By matching By MS/MS 1 1 1.3013 1.2627 4.9949 2 Median NaN NaN NaN 0 0 Median 1.5065 1.3081 NaN 1 0 Median 1.124 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3913800 1884500 2029300 0 0 0 810740 340270 470470 3103000 1544200 1558800 0 0 0 0 0 0 0 0 0 29889 1982 31427 156038;156039 156953 156953 1 SFLKPGEK EDHPDEEMGFTIDIKSFLKPGEKTYTQRCR GFTIDIKSFLKPGEKTYTQRCRLFVGNLPT K S F E K T 0 0 0 0 0 0 1 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 8 1 904.50182 Q8WXF1;X6RDA4 Q8WXF1 69 76 PSPC1 Paraspeckle component 1 yes no 2 0.039139 63.565 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.73597 0.78584 10.584 5 Median NaN NaN NaN 0 0 Median 0.94153 0.88182 NaN 1 0 Median 0.64957 0.70644 8.3374 2 0 Median 0.89351 0.82502 NaN 1 0 Median 0.73597 0.78584 NaN 1 0 Median NaN NaN NaN 0 0 Median 12739000 7015900 5722900 0 0 0 3512800 1657200 1855500 7548100 4441400 3106600 542610 290600 252010 1135400 626700 508740 0 0 0 29890 3520 31428 156040;156041;156042;156043;156044 156954;156955;156956 156955 3 SFLLDLLNATGK NITQKVVWVEESDKRSFLLDLLNATGKDSL DKRSFLLDLLNATGKDSLTLVFVETKKGAD R S F G K D 1 0 1 1 0 0 0 1 0 0 4 1 0 1 0 1 1 0 0 0 0 0 12 0 1290.7184 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;A0A0J9YVQ7 A0A2U3TZJ9 428 439 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.00052736 76.143 By matching By matching By matching By MS/MS By MS/MS By matching 3 2 5 4 2 2 1.1341 1.0895 15.209 18 Median 1.1279 1.0783 1.8512 3 0 Median 1.0185 0.89608 7.9057 2 0 Median 1.1658 1.1848 7.7252 5 0 Median 1.118 0.96865 10.735 4 0 Median 1.3878 1.3685 9.6952 2 0 Median 1.1415 0.93491 3.4742 2 0 Median 91521000 40062000 51459000 14683000 6551600 8131700 2276200 984470 1291700 50459000 22051000 28408000 6156600 2801800 3354800 17478000 7474800 10003000 469300 198650 270650 29891 263 31429 156045;156046;156047;156048;156049;156050;156051;156052;156053;156054;156055;156056;156057;156058;156059;156060;156061;156062 156957;156958;156959;156960 156959 4 SFLSQGQVLK PLEEATLSELKTVLKSFLSQGQVLKLEAKT KTVLKSFLSQGQVLKLEAKTDPSILGGMIV K S F L K L 0 0 0 0 0 2 0 1 0 0 2 1 0 1 0 2 0 0 0 1 0 0 10 0 1105.6132 P48047;H7C068 P48047 163 172 ATP5O ATP synthase subunit O, mitochondrial yes no 2 0.0030923 57.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 2 1.267 1.1226 40.098 8 Median 1.2331 1.1501 22.882 2 0 Median 0.91917 0.76963 57.933 2 0 Median 1.1601 1.0871 NaN 1 0 Median 1.8179 1.5035 NaN 1 0 Median 1.221 1.2838 57.7 2 0 Median NaN NaN NaN 0 0 Median 131100000 63308000 67793000 104880000 51777000 53100000 9084600 3829400 5255300 10975000 5272000 5703200 1472600 494670 977950 4692300 1935600 2756600 0 0 0 29892 2358 31430 156063;156064;156065;156066;156067;156068;156069;156070;156071 156961;156962;156963;156964;156965;156966 156961 6 SFLSTLPGQSLIDK PTTDEEKDSLIAIDRSFLSTLPGQSLIDKL RSFLSTLPGQSLIDKLYNIWIRLQSHVNIV R S F D K L 0 0 0 1 0 1 0 1 0 1 3 1 0 1 1 3 1 0 0 0 0 0 14 0 1504.8137 O95602;B9ZVN9 O95602 373 386 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.0017783 46.706 By matching By MS/MS 1 1 0.90164 0.90668 0.30846 2 Median NaN NaN NaN 0 0 Median 1.0009 0.90866 NaN 1 0 Median 0.81226 0.9047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5086100 2759700 2326300 0 0 0 82752 39679 43074 5003300 2720100 2283200 0 0 0 0 0 0 0 0 0 29893 1781 31431 156072;156073 156967;156968 156968 2 SFLTVPQGLVK RIEDNSLLYQYLEIKSFLTVPQGLVKVMTL LEIKSFLTVPQGLVKVMTLCPIETLRKKSL K S F V K V 0 0 0 0 0 1 0 1 0 0 2 1 0 1 1 1 1 0 0 2 0 0 11 0 1187.6914 Q92990;M0QX84 Q92990 360 370 GLMN Glomulin yes no 2 0.050579 26.384 By MS/MS By matching 1 1 0.85265 0.78912 3.2095 2 Median 0.83423 0.80723 NaN 1 0 Median 0.87149 0.77141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2235800 1234000 1001800 1572400 880820 691540 663450 353200 310260 0 0 0 0 0 0 0 0 0 0 0 0 29894 3572 31432 156074;156075 156969 156969 1 SFLVASVLPGPDGNINSPTR EVLGVIGDCPELVQRSFLVASVLPGPDGNI SVLPGPDGNINSPTRNADMQEELIASLEEQ R S F T R N 1 1 2 1 0 0 0 2 0 1 2 0 0 1 3 3 1 0 0 2 0 0 20 0 2040.064 Q7Z3K3 Q7Z3K3 1322 1341 POGZ Pogo transposable element with ZNF domain yes yes 2;3 6.7958E-09 76.155 By matching By MS/MS By matching By MS/MS 1 3 2 4 0.52835 0.55845 66.638 10 Median 0.078206 0.078547 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53355 0.58243 37.276 3 2 Median 0.33332 0.30928 24.623 2 0 Median 0.58346 0.5908 10.386 4 1 Median NaN NaN NaN 0 0 Median 18705000 12519000 6186100 3051700 2760900 290840 0 0 0 4837400 3261100 1576300 253870 176240 77635 10562000 6320900 4241300 0 0 0 29895 3241 31433 156076;156077;156078;156079;156080;156081;156082;156083;156084;156085 156970;156971;156972;156973;156974;156975;156976;156977 156975 8 SFLVGEAAR PLSNKLTYGTMVFVRSFLVGEAARALSKAC TMVFVRSFLVGEAARALSKACTIAIRYSAV R S F A R A 2 1 0 0 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 948.50288 Q15067 Q15067 283 291 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 yes yes 2 0.0049104 59.245 By matching By MS/MS By MS/MS 1 1 1 1.8089 1.5724 13.439 3 Median NaN NaN NaN 0 0 Median 1.9242 1.6701 NaN 1 0 Median 1.2816 1.2916 NaN 1 1 Median 1.8089 1.5724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7560500 2744400 4816200 0 0 0 1588200 475090 1113100 2225600 1106100 1119600 3746700 1163200 2583500 0 0 0 0 0 0 29896 2925 31434 156086;156087;156088 156978;156979 156979 2 SFLYEIVSNKR VEDSLWPYKGRPENKSFLYEIVSNKRNGID PENKSFLYEIVSNKRNGIDVDKWDYFARDC K S F K R N 0 1 1 0 0 0 1 0 0 1 1 1 0 1 0 2 0 0 1 1 0 0 11 1 1354.7245 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90 Q9Y3Z3 295 305 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2;3 0.00017567 120.12 By MS/MS 2 1.1635 1.1683 NaN 1 Median 1.1635 1.1683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6491000 3007600 3483400 6491000 3007600 3483400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29897 4436 31435 156089;156090 156980;156981 156980 2 SFMALSQDIQK QEVTNNLEFAKELQRSFMALSQDIQKTIKK ELQRSFMALSQDIQKTIKKTARREQLMREE R S F Q K T 1 0 0 1 0 2 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 0 11 0 1266.6278 Q14444;E9PLA9;G3V153 Q14444 115 125 CAPRIN1 Caprin-1 yes no 2 0.00011205 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 4 1 1 1.0577 0.92623 39.425 14 Median 1.1266 1.0898 18.26 4 3 Median 0.93995 0.81401 46.714 4 0 Median 1.0356 1.0945 53.546 4 0 Median 0.95293 0.82504 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92025 0.76901 NaN 1 0 Median 132650000 62890000 69759000 73079000 34829000 38250000 18980000 8849200 10131000 32669000 15311000 17359000 7472900 3691700 3781200 0 0 0 447040 209250 237790 29898 2878 31436 156091;156092;156093;156094;156095;156096;156097;156098;156099;156100;156101;156102;156103;156104 156982;156983;156984;156985;156986;156987;156988;156989;156990;156991;156992 156987 11 SFMDFGSWER GNFKPSQKGFAGGTKSFMDFGSWERHTKGI AGGTKSFMDFGSWERHTKGIGQKLLQKMGY K S F E R H 0 1 0 1 0 0 1 1 0 0 0 0 1 2 0 2 0 1 0 0 0 0 10 0 1260.5234 Q9UBB9 Q9UBB9 138 147 TFIP11 Tuftelin-interacting protein 11 yes yes 2 0.044206 29.81 By MS/MS 1 0.62146 0.6662 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62146 0.6662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1579100 1048100 530990 0 0 0 0 0 0 1579100 1048100 530990 0 0 0 0 0 0 0 0 0 29899 4235 31437 156105 156993 156993 1 SFMESGGTVLSTNWSDVGKR IYSDGSDEVKRAMNKSFMESGGTVLSTNWS GGTVLSTNWSDVGKRKVEINPPDDMEWKKY K S F K R K 0 1 1 1 0 0 1 3 0 0 1 1 1 1 0 4 2 1 0 2 0 0 20 1 2157.0161 Q9Y2Z0 Q9Y2Z0 331 350 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 3 2.4475E-07 51.348 By MS/MS 1 1.2639 1.3542 NaN 1 Median 1.2639 1.3542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8182500 3305400 4877100 8182500 3305400 4877100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29900 4398 31438 156106 156994;156995 156994 2 SFMHVNTNANFYK QKLGITHVLNAAEGRSFMHVNTNANFYKDS GRSFMHVNTNANFYKDSGITYLGIKANDTQ R S F Y K D 1 0 3 0 0 0 0 0 1 0 0 1 1 2 0 1 1 0 1 1 0 0 13 0 1571.7191 P51452;K7ES89 P51452 67 79 DUSP3 Dual specificity protein phosphatase 3 yes no 2;3 9.0513E-07 116.55 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.2894 1.2148 18.939 7 Median 1.3597 1.2827 15.256 3 0 Median 1.23 1.0636 3.5411 2 0 Median 1.3207 1.252 NaN 1 0 Median 1.0759 0.88766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51054000 21674000 29381000 41461000 17555000 23906000 4602300 2025100 2577200 4203100 1694600 2508500 787930 398950 388980 0 0 0 0 0 0 29901 2432 31439 156107;156108;156109;156110;156111;156112;156113 156996;156997;156998;156999;157000;157001;157002 157000 7 SFMVNWTHAPGNVEK TGPPTELITSEVTARSFMVNWTHAPGNVEK SFMVNWTHAPGNVEKYRVVYYPTRGGKPDE R S F E K Y 1 0 2 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 2 0 0 15 0 1715.809 H0YBB2;Q4G0W3;J3QT83;Q05707 H0YBB2 125 139 COL14A1 Collagen alpha-1(XIV) chain yes no 2 0.0010616 47.559 By matching By MS/MS By MS/MS 1 1 2 0.90258 0.97018 11.407 4 Linear NaN NaN NaN 0 0 Median 0.86814 0.77176 NaN 1 0 Median 0.83226 0.8602 NaN 1 1 Median 1.0181 0.88756 16.072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31199000 15197000 16002000 0 0 0 536600 305380 231220 11366000 5839800 5526200 19297000 9052200 10244000 0 0 0 0 0 0 29902 1169 31440 156114;156115;156116;156117 157003;157004 157004 391 2 SFNIPLLVLGGGGYTVR NLSIRGHGECVEYVKSFNIPLLVLGGGGYT NIPLLVLGGGGYTVRNVARCWTYETSLLVE K S F V R N 0 1 1 0 0 0 0 4 0 1 3 0 0 1 1 1 1 0 1 2 0 0 17 0 1761.9778 O15379 O15379 285 301 HDAC3 Histone deacetylase 3 yes yes 2 2.9201E-05 54.7 By matching By MS/MS 1 1 0.87621 0.8296 5.7771 2 Median NaN NaN NaN 0 0 Median 0.96882 0.86419 NaN 1 0 Median 0.79245 0.79639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1920800 1087900 832920 0 0 0 213670 77268 136410 1707200 1010700 696520 0 0 0 0 0 0 0 0 0 29903 1541 31441 156118;156119 157005;157006 157006 2 SFNLIIAK HNMLHGDGTNRWFDKSFNLIIAKDGSTAVH TNRWFDKSFNLIIAKDGSTAVHFEHSWGDG K S F A K D 1 0 1 0 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 904.5382 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 355 362 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.066188 31.289 By MS/MS By matching 1 1 1.4253 1.2994 39.915 2 Median 1.0186 0.97987 NaN 1 0 Median 1.9942 1.7232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4398200 1766600 2631600 3167800 1361000 1806800 1230300 405540 824780 0 0 0 0 0 0 0 0 0 0 0 0 29904 317 31442 156120;156121 157007 157007 1 SFNLPMLMLGGGGYTIR NLTIKGHAKCVEFVKSFNLPMLMLGGGGYT NLPMLMLGGGGYTIRNVARCWTYETAVALD K S F I R N 0 1 1 0 0 0 0 4 0 1 3 0 2 1 1 1 1 0 1 0 0 0 17 0 1825.9219 Q13547 Q13547 290 306 HDAC1 Histone deacetylase 1 yes yes 2 2.1209E-05 65.574 By MS/MS By matching By MS/MS By matching By matching 1 3 4 5 1 1.1021 0.99113 26.666 14 Median 0.99645 0.97355 NaN 1 0 Median 1.2163 1.0896 16.677 3 0 Plateau 0.85693 0.86556 29.981 4 0 Median 1.1885 1.0366 23.769 5 0 Median NaN NaN NaN 0 0 Median 1.094 0.96743 NaN 1 0 Median 29858000 16276000 13581000 4425900 2671900 1754000 693090 328060 365040 23711000 12874000 10836000 872340 330820 541520 0 0 0 155330 71095 84232 29905 2823 31443;31444 156122;156123;156124;156125;156126;156127;156128;156129;156130;156131;156132;156133;156134;156135 157008;157009;157010;157011;157012;157013;157014 157008 1519 7 SFNLSALEK EKQFLEVWEKNRKLKSFNLSALEKHGPVYE KNRKLKSFNLSALEKHGPVYEDDCFGCLSW K S F E K H 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 2 0 0 0 0 0 0 9 0 1007.5288 C9JIF9;P13798;H7C393;H7C1U0;C9JLK2 C9JIF9 132 140 APEH Acylamino-acid-releasing enzyme yes no 2 0.0029859 68.224 By MS/MS By matching 1 1 1.1689 1.0647 14.083 2 Median 1.0372 0.96378 NaN 1 0 Median 1.3174 1.1762 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7290500 3358600 3931900 6099200 2842500 3256700 1191300 516110 675190 0 0 0 0 0 0 0 0 0 0 0 0 29906 699 31445 156136;156137 157015 157015 1 SFPDFPTPGVVFR ______________________________ IRSFPDFPTPGVVFRDISPVLKDPASFRAA R S F F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 3 3 1 1 0 0 2 0 0 13 0 1464.7402 P07741;H3BQZ9;H3BQB1;H3BQF1;H3BSW3 P07741 15 27 APRT Adenine phosphoribosyltransferase yes no 2 4.3287E-07 133.23 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 3 3 2 0.9305 0.83756 29.646 15 Median 0.72221 0.69704 10.696 3 1 Median 0.98152 0.82053 46.974 4 0 Median 1.1146 1.0549 18.356 3 0 Plateau 1.746 1.4236 26.86 3 0 Plateau 0.78431 0.82066 2.883 2 0 Median NaN NaN NaN 0 0 Median 77435000 43147000 34288000 57363000 32964000 24399000 11371000 5834600 5536600 6659700 3372200 3287500 662190 287300 374890 1378800 689710 689080 0 0 0 29907 1891 31446 156138;156139;156140;156141;156142;156143;156144;156145;156146;156147;156148;156149;156150;156151;156152 157016;157017;157018;157019;157020;157021;157022;157023;157024;157025;157026;157027;157028;157029;157030;157031;157032;157033;157034;157035;157036;157037;157038;157039;157040;157041;157042 157024 27 SFPIEQSSHPVR LYRVVDNEGTLQLKRSFPIEQSSHPVRSIF LKRSFPIEQSSHPVRSIFCPLMSFRQGACV R S F V R S 0 1 0 0 0 1 1 0 1 1 0 0 0 1 2 3 0 0 0 1 0 0 12 0 1382.6943 Q9H1Z4;A0A087X091 Q9H1Z4 398 409 WDR13 WD repeat-containing protein 13 yes no 3 0.021069 35.737 By MS/MS 1 0.73914 0.80076 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73914 0.80076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3641400 2033600 1607800 0 0 0 0 0 0 3641400 2033600 1607800 0 0 0 0 0 0 0 0 0 29908 3937 31447 156153 157043 157043 1 SFPKDDPSKPVHLTAFLGYK FLPRKRSSRHRGKVKSFPKDDPSKPVHLTA DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K S F Y K A 1 0 0 2 0 0 0 1 1 0 2 3 0 2 3 2 1 0 1 1 0 0 20 2 2246.1736 P39023;H7C422;H7C3M2;F8WCR1 P39023 31 50 RPL3 60S ribosomal protein L3 yes no 4 7.1109E-06 45.696 By MS/MS By matching 2 1 0.80185 0.94605 22.648 3 Median 0.80138 0.91134 5.2859 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.37 1.3419 NaN 1 0 Median 22490000 10165000 12325000 21828000 9957600 11870000 0 0 0 0 0 0 0 0 0 0 0 0 662120 207100 455020 29909 2281 31448 156154;156155;156156 157044;157045 157044 2 SFPLSSPISK HPALEQLLVVMDRIRSFPLSSPISKFLNGL MDRIRSFPLSSPISKFLNGLEILLAKAQDW R S F S K F 0 0 0 0 0 0 0 0 0 1 1 1 0 1 2 4 0 0 0 0 0 0 10 0 1061.5757 Q9NU22 Q9NU22 3763 3772 MDN1 Midasin yes yes 2 0.03078 47.187 By MS/MS 1 0.90773 0.97026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90773 0.97026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12322000 3831900 8490200 0 0 0 0 0 0 12322000 3831900 8490200 0 0 0 0 0 0 0 0 0 29910 4112 31449 156157 157046;157047 157047 2 SFPPLADR TMEDKFIVCLNKVTKSFPPLADRFMNAVFF CLNKVTKSFPPLADRFMNAVFFLLPKFHGV K S F D R F 1 1 0 1 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 8 0 901.46577 P78527 P78527 2370 2377 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.01208 55.676 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 1.1173 0.95084 62.643 8 Median 1.7934 1.8758 136.59 2 0 Median 1.2366 1.0371 13.846 2 0 Median 0.66578 0.70474 NaN 1 0 Median 1.0822 0.94216 2.8664 2 0 Median NaN NaN NaN 0 0 Median 1.7028 1.4144 NaN 1 0 Median 30206000 13515000 16691000 7099700 2694000 4405700 10958000 4383300 6574300 7956200 4486100 3470100 3751200 1793300 1957900 0 0 0 441060 158020 283040 29911 2647 31450 156158;156159;156160;156161;156162;156163;156164;156165 157048;157049;157050;157051;157052;157053 157049 6 SFPPPGPAEGLLR ______________________________ LKSFPPPGPAEGLLRQQPDTEAVLNGKGLG K S F L R Q 1 1 0 0 0 0 1 2 0 0 2 0 0 1 4 1 0 0 0 0 0 0 13 0 1336.7139 E9PMI6;J3KN38;P54105;E9PJF4;E9PQ83 E9PMI6 6 18 CLNS1A Methylosome subunit pICln yes no 2 0.00016426 94.297 By MS/MS 1 0.77912 0.72833 NaN 1 Median 0.77912 0.72833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9857800 5277900 4579900 9857800 5277900 4579900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29912 967 31451 156166 157054 157054 1 SFQEILQIVSPVR AALSKNNEVSLAALKSFQEILQIVSPVRDS LKSFQEILQIVSPVRDSDKPETPPVVNVPV K S F V R D 0 1 0 0 0 2 1 0 0 2 1 0 0 1 1 2 0 0 0 2 0 0 13 0 1514.8457 A0A286YFF8;Q7Z3U7 A0A286YFF8 1169 1181 MON2 Protein MON2 homolog yes no 2 0.00077673 65.5 By MS/MS By MS/MS 1 1 0.82864 0.76317 40.083 2 Median 1.0092 1.0132 NaN 1 0 Median 0.68041 0.57482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2655000 1399000 1256000 1682600 839830 842810 972370 559140 413230 0 0 0 0 0 0 0 0 0 0 0 0 29913 353 31452 156167;156168 157055;157056;157057 157056 2 SFQGEIDALSKR NTPEDLRKQVAPLLKSFQGEIDALSKRSKE LLKSFQGEIDALSKRSKEAEAAFLNVYKRL K S F K R S 1 1 0 1 0 1 1 1 0 1 1 1 0 1 0 2 0 0 0 0 0 0 12 1 1349.6939 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 70 81 CUX1 Protein CASP no no 3 0.00032347 53.967 By MS/MS 1 1.1397 1.3666 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1397 1.3666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6039300 2789200 3250100 0 0 0 0 0 0 6039300 2789200 3250100 0 0 0 0 0 0 0 0 0 29914 388;2847 31453 156169 157058 157058 1 SFQIIAHLK SEKWQKSEAIMEQLKSFQIIAHLKRLQEEI IMEQLKSFQIIAHLKRLQEEINEVKTWSNR K S F L K R 1 0 0 0 0 1 0 0 1 2 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1055.6128 Q70UQ0 Q70UQ0 112 120 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 2 0.0073226 51.854 By MS/MS By MS/MS By matching 1 1 1 1.0478 1.0517 14.222 3 Median 0.89097 0.84404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0478 1.1014 NaN 1 0 Median 1.2559 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8817700 4012700 4805000 2293000 1147800 1145200 0 0 0 6036800 2675200 3361600 487940 189650 298290 0 0 0 0 0 0 29915 3208 31454 156170;156171;156172 157059;157060 157060 2 SFQIIAHLKR SEKWQKSEAIMEQLKSFQIIAHLKRLQEEI MEQLKSFQIIAHLKRLQEEINEVKTWSNRI K S F K R L 1 1 0 0 0 1 0 0 1 2 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1211.7139 Q70UQ0 Q70UQ0 112 121 IKBIP Inhibitor of nuclear factor kappa-B kinase-interacting protein yes yes 3 0.0098786 44.203 By MS/MS 1 1.081 0.95161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.081 0.95161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 732010 319660 412350 0 0 0 0 0 0 0 0 0 732010 319660 412350 0 0 0 0 0 0 29916 3208 31455 156173 157061 157061 1 SFQMFENEIITK PIFFDMMQCEFHSTRSFQMFENEIITKLDH STRSFQMFENEIITKLDHEVEGGRGDEQYK R S F T K L 0 0 1 0 0 1 2 0 0 2 0 1 1 2 0 1 1 0 0 0 0 0 12 0 1485.7174 A0A096LNH6;Q14185 A0A096LNH6 1141 1152 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.021881 50.353 By MS/MS 1 0.91243 1.0167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91243 1.0167 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2392600 1328200 1064400 0 0 0 0 0 0 2392600 1328200 1064400 0 0 0 0 0 0 0 0 0 29917 140 31456 156174 157062 157062 1 SFQMQYNLR KTEALRLQYRYLDLRSFQMQYNLRLRSQMV RYLDLRSFQMQYNLRLRSQMVMKMREYLCN R S F L R L 0 1 1 0 0 2 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 9 0 1185.5601 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3ITS3;A0A3B3IS01;A0A3B3IS54 Q6PI48 180 188 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.0005572 114.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.669 1.4463 24.714 3 Median NaN NaN NaN 0 0 Median 1.669 1.4463 NaN 1 1 Median 0.95308 0.96757 NaN 1 0 Median 1.8148 1.5176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20576000 9590400 10986000 0 0 0 2441400 947370 1494000 15241000 7741100 7499500 2894100 901880 1992200 0 0 0 0 0 0 29918 3171 31457 156175;156176;156177;156178 157063;157064;157065;157066;157067;157068 157065 6 SFQNQIAAIQR IAWDKGEKRNLEVLRSFQNQIAAIQRDAVW EVLRSFQNQIAAIQRDAVWWLHTVVPSISK R S F Q R D 2 1 1 0 0 3 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 0 11 0 1274.6731 Q8N201 Q8N201 577 587 INTS1 Integrator complex subunit 1 yes yes 2 0.031454 50.607 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29919 3360 31458 156179 157069 157069 1 SFQPDTGRIEVFR GCAIQCRVTTEDPARSFQPDTGRIEVFRSG ARSFQPDTGRIEVFRSGEGMGIRLDNASAF R S F F R S 0 2 0 1 0 1 1 1 0 1 0 0 0 2 1 1 1 0 0 1 0 0 13 1 1550.7841 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 386 398 PC Pyruvate carboxylase, mitochondrial yes no 3 0.052256 15.545 By MS/MS 1 0.72949 0.81048 NaN 1 Median 0.72949 0.81048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6111100 3442300 2668900 6111100 3442300 2668900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29920 1967 31459 156180 157070 157070 1 SFQQELDAR GKDVNSSSPVMLAFKSFQQELDARHDKYER VMLAFKSFQQELDARHDKYERLVKLSRDIT K S F A R H 1 1 0 1 0 2 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1092.52 Q99598;C4P0D6;C4P0D8;Q5VVQ1;C4P0D4 Q99598 41 49 TSNAX;DISC1 Translin-associated protein X yes no 2 0.0005315 117.04 By matching By MS/MS By matching 1 2 2 1.128 0.93804 37.733 5 Median 1.5467 1.5071 NaN 1 0 Median 1.3323 1.2186 37.006 2 0 Median NaN NaN NaN 0 0 Median 0.94647 0.73581 7.2645 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31310000 14280000 17030000 9083600 4137400 4946200 18425000 8130600 10294000 0 0 0 3802200 2012400 1789800 0 0 0 0 0 0 29921 3756 31460 156181;156182;156183;156184;156185 157071;157072 157071 2 SFQQSSLSR ______________________________ ______________________________ K S F S R D 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 9 0 1038.5094 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;D6R8Z5;Q68E03;D6REK4;D6RCM3;A0A1B0GX04;D6RBS2;D6R9F3;D6RB45 P43243 4 12 MATR3;DKFZp686L22104 Matrin-3 yes no 2 6.1731E-05 151.04 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 5 6 1.2104 1.1053 43.849 21 Median 1.6339 1.5593 14.312 2 0 Median 0.94083 0.94383 12.823 2 0 Median 1.0286 1.0259 38.069 4 0 Median 1.3126 1.1114 0.1757 2 0 Median 1.1176 1.1244 72.128 5 1 Median 1.2148 0.99296 24.439 6 0 Median 111360000 46725000 64639000 1217900 472640 745230 10004000 4314100 5690300 15520000 7806600 7713600 5177000 2386500 2790500 60474000 23855000 36619000 18970000 7889800 11080000 29922 297 31461 156186;156187;156188;156189;156190;156191;156192;156193;156194;156195;156196;156197;156198;156199;156200;156201;156202;156203;156204;156205;156206 157073;157074;157075;157076;157077;157078;157079;157080;157081;157082;157083;157084;157085;157086;157087 157077 15 SFQSTVTGELNAPYSK FVLRPHTLNSTSTSKSFQSTVTGELNAPYS FQSTVTGELNAPYSKQFVHSKSSQYRKMKT K S F S K Q 1 0 1 0 0 1 1 1 0 0 1 1 0 1 1 3 2 0 1 1 0 0 16 0 1727.8366 Q8NEZ4;H7BY37;H0Y765 Q8NEZ4 4737 4752 KMT2C Histone-lysine N-methyltransferase 2C yes no 2 0.0013115 55.452 By MS/MS 2 0.76672 0.826 8.5298 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76672 0.826 8.5298 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9132000 4744000 4388000 0 0 0 0 0 0 9132000 4744000 4388000 0 0 0 0 0 0 0 0 0 29923 3431 31462 156207;156208 157088;157089 157089 2 SFRPGDIVLAK EDVRATEKDKVEIYKSFRPGDIVLAKVISL EIYKSFRPGDIVLAKVISLGDAQSNYLLTT K S F A K V 1 1 0 1 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 11 1 1201.6819 Q9Y3B2;B1AMU3;B1AMU7 Q9Y3B2 121 131 EXOSC1 Exosome complex component CSL4 yes no 2;3 0.00057602 75.294 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 2 3 1.0669 1.0238 18.985 9 Median 0.61461 0.64423 NaN 1 0 Median 1.0679 1.0039 NaN 1 0 Median 0.97147 1.0237 0.66826 2 0 Median 1.1106 0.98314 5.733 2 0 Median 1.0804 1.2128 4.4501 3 0 Median NaN NaN NaN 0 0 Median 77539000 39033000 38506000 5545300 2784900 2760400 877310 382350 494960 56472000 28718000 27754000 10283000 4931400 5351300 4361800 2216700 2145100 0 0 0 29924 4414 31463 156209;156210;156211;156212;156213;156214;156215;156216;156217 157090;157091;157092;157093;157094;157095;157096;157097 157094 8 SFSDEQWYSFNDQHVSR HSGSAAGGHYYACIKSFSDEQWYSFNDQHV SDEQWYSFNDQHVSRITQEDIKKTHGGSSG K S F S R I 0 1 1 2 0 2 1 0 1 0 0 0 0 2 0 4 0 1 1 1 0 0 17 0 2130.9031 Q96K76 Q96K76 510 526 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 3 1.3822E-06 84.14 By MS/MS By matching 1 2 1.3969 1.3185 10.349 3 Plateau 1.3969 1.3185 NaN 1 0 Median 1.269 1.1203 6.1066 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7477100 3539600 3937500 6845900 3273200 3572700 631210 266440 364770 0 0 0 0 0 0 0 0 0 0 0 0 29925 3690 31464 156218;156219;156220 157098 157098 1 SFSEFGK VRNLATTVTEEILEKSFSEFGKLERVKKLK VTEEILEKSFSEFGKLERVKKLKDYAFVHF K S F G K L 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 2 0 0 0 0 0 0 7 0 800.37047 O43390;B4DT28 O43390 360 366 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2 0.018479 62.714 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 1.4 1.1751 11.071 13 Median NaN NaN NaN 0 0 Median 1.5404 1.3533 10.76 2 0 Median 1.1111 1.1293 2.9716 2 0 Median 1.685 1.4556 2.8499 2 0 Median 1.1379 1.0858 6.112 3 0 Median 1.4196 1.1685 4.1106 4 0 Median 56438000 24773000 31665000 0 0 0 3799400 1410200 2389100 20134000 9067500 11067000 2235300 956000 1279300 19857000 8804500 11052000 10413000 4534400 5878100 29926 1568 31465 156221;156222;156223;156224;156225;156226;156227;156228;156229;156230;156231;156232;156233 157099;157100;157101;157102;157103;157104;157105;157106;157107;157108;157109 157099 11 SFSEFGKLER VRNLATTVTEEILEKSFSEFGKLERVKKLK EILEKSFSEFGKLERVKKLKDYAFVHFEDR K S F E R V 0 1 0 0 0 0 2 1 0 0 1 1 0 2 0 2 0 0 0 0 0 0 10 1 1198.5982 O43390;B4DT28 O43390 360 369 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 0.00010746 130.75 By matching By MS/MS By MS/MS 1 6 3 1.1029 1.1464 11.953 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0517 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1283 1.1952 7.8998 6 1 Median 1.1013 0.97338 20.256 3 0 Median 111410000 53104000 58307000 0 0 0 0 0 0 2237900 855160 1382800 0 0 0 91615000 44788000 46826000 17558000 7460600 10098000 29927 1568 31466 156234;156235;156236;156237;156238;156239;156240;156241;156242;156243 157110;157111;157112;157113;157114;157115;157116;157117;157118;157119;157120 157111 11 SFSKEELMSSDLEETAGSTSIPK MEDPSISFSKPKKKKSFSKEELMSSDLEET SSDLEETAGSTSIPKRKKSTPKEETVNDPE K S F P K R 1 0 0 1 0 0 4 1 0 1 2 2 1 1 1 6 2 0 0 0 0 0 23 1 2472.1578 O00567 O00567 511 533 NOP56 Nucleolar protein 56 yes yes 3 1.0122E-07 44.632 By matching By MS/MS 1 1 0.71205 0.77669 11.766 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75709 0.84407 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66969 0.71469 NaN 1 0 Median NaN NaN NaN 0 0 Median 19226000 11028000 8198000 0 0 0 0 0 0 10967000 6138200 4828500 0 0 0 8259300 4889800 3369500 0 0 0 29928 1472 31467 156244;156245 157121;157122 157121 2 SFSLASSSNSPISQR HTEAIGKNNPPLKSRSFSLASSSNSPISQR SFSLASSSNSPISQRRPSQNAISFFNVGHS R S F Q R R 1 1 1 0 0 1 0 0 0 1 1 0 0 1 1 7 0 0 0 0 0 0 15 0 1566.7638 Q9BXB4 Q9BXB4 172 186 OSBPL11 Oxysterol-binding protein-related protein 11 yes yes 2 0.036698 39.917 By MS/MS 1 0.91226 0.87832 NaN 1 Median 0.91226 0.87832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4184800 2150600 2034200 4184800 2150600 2034200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29929 3878 31468 156246 157123 157123 0 SFSLDEPPLFIPDNIATIR KPEKNLQPRQRRSSKSFSLDEPPLFIPDNI DEPPLFIPDNIATIRREGSDHSSSFESKYM K S F I R R 1 1 1 2 0 0 1 0 0 3 2 0 0 2 3 2 1 0 0 0 0 0 19 0 2144.1154 Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576 680 698 PHF3 PHD finger protein 3 yes no 2 0.0026194 29.328 By matching By MS/MS 1 1 0.80596 0.94689 67.269 2 Median 1.2263 1.5236 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52968 0.58847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1656000 991280 664730 265980 108820 157160 0 0 0 1390000 882460 507570 0 0 0 0 0 0 0 0 0 29930 3539 31469 156247;156248 157124 157124 1 SFSLGDIYFK VQMVNGTITNPINGKSFSLGDIYFKLFRAS PINGKSFSLGDIYFKLFRASGDMRTNGDNY K S F F K L 0 0 0 1 0 0 0 1 0 1 1 1 0 2 0 2 0 0 1 0 0 0 10 0 1175.5863 P11717;S4R328 P11717 2147 2156 IGF2R Cation-independent mannose-6-phosphate receptor yes no 2 0.0061875 49.418 By MS/MS By MS/MS 2 1 1.3012 1.2274 1.3414 3 Median 1.2629 1.2252 0.25546 2 0 Median 1.4365 1.2537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13750000 6099300 7651100 8571900 3897400 4674500 5178500 2201900 2976600 0 0 0 0 0 0 0 0 0 0 0 0 29931 1969 31470 156249;156250;156251 157125;157126;157127;157128;157129 157125 5 SFSNSSSFGVHHR THLEPAPYICCECGKSFSNSSSFGVHHRTH GKSFSNSSSFGVHHRTHTGERPYECTECGR K S F H R T 0 1 1 0 0 0 0 1 2 0 0 0 0 2 0 5 0 0 0 1 0 0 13 0 1447.6593 A0A0A0MRR1;Q5VV50;Q5VV52 A0A0A0MRR1 235 247 ZNF691 Zinc finger protein 691 yes no 3 0.00073404 46.88 By MS/MS By MS/MS 2 1 1.0937 1.1227 26.794 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0833 1.0849 4.8377 2 0 Median 1.9395 1.7191 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3224300 1333800 1890500 0 0 0 0 0 0 2274000 1040500 1233400 950280 293250 657030 0 0 0 0 0 0 29932 168 31471 156252;156253;156254 157130;157131;157132;157133 157132 4 SFSQSATLAVHHR DHLGKRPYRCDICGKSFSQSATLAVHHRTH GKSFSQSATLAVHHRTHLEPAPYICCECGK K S F H R T 2 1 0 0 0 1 0 0 2 0 1 0 0 1 0 3 1 0 0 1 0 0 13 0 1439.727 A0A0A0MRR1;Q5VV50;Q5VV52 A0A0A0MRR1 207 219 ZNF691 Zinc finger protein 691 yes no 3 1.2228E-05 85.845 By MS/MS By MS/MS 2 2 1.0556 1.0425 8.1424 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9987 1.0331 1.2709 2 0 Median 1.3829 1.1886 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14583000 6797100 7786400 0 0 0 0 0 0 10884000 5263500 5620800 3699200 1533600 2165600 0 0 0 0 0 0 29933 168 31472 156255;156256;156257;156258 157134;157135;157136;157137;157138 157138 5 SFSRPDHLNSHVR DGAVHKPYNCSHCGKSFSRPDHLNSHVRQV GKSFSRPDHLNSHVRQVHSTERPFKCEKCE K S F V R Q 0 2 1 1 0 0 0 0 2 0 1 0 0 1 1 3 0 0 0 1 0 0 13 1 1550.7702 I3L2Z5;A0A087WWR2;P56270;H3BQI4 I3L2Z5 95 107 MAZ Myc-associated zinc finger protein yes no 3 1.8652E-05 86.803 By MS/MS By MS/MS 2 1 0.91909 0.85768 47.402 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.18 1.2204 60.534 2 0 Median 0.91909 0.85768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13643000 7116200 6526800 0 0 0 0 0 0 5568700 2962300 2606400 8074200 4153900 3920400 0 0 0 0 0 0 29934 61 31473 156259;156260;156261 157139;157140;157141 157141 3 SFSSIVEVAR ACALTCDWAERILKRSFSSIVEVARFLLQQ RILKRSFSSIVEVARFLLQQHLISARSAHA R S F A R F 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 3 0 0 0 2 0 0 10 0 1093.5768 P48382;F8W689;A0A0A0MSQ2;H0Y4B4 P48382 219 228 RFX5 DNA-binding protein RFX5 yes no 2 0.00036244 87.308 By MS/MS By matching 1 1 1.2562 1.1677 35.757 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8874 0.90686 NaN 1 0 Median 1.7784 1.5037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8507300 4058300 4449000 0 0 0 0 0 0 8307300 3975500 4331700 200030 82745 117280 0 0 0 0 0 0 29935 2360 31474 156262;156263 157142;157143 157143 2 SFSSPENFQR RTMDNMTSSAQIIQRSFSSPENFQRQAVIT QIIQRSFSSPENFQRQAVITLV________ R S F Q R Q 0 1 1 0 0 1 1 0 0 0 0 0 0 2 1 3 0 0 0 0 0 0 10 0 1197.5415 I3L521;F5GXV8;F5GY08;J3KPD3;Q9Y580;G3V1T9 I3L521 132 141 RBM7 RNA-binding protein 7 yes no 2 0.0045773 52.716 By matching By MS/MS By matching 1 1 1 1.314 1.114 9.4628 3 Plateau NaN NaN NaN 0 0 Median 1.314 1.114 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3216 1.1067 NaN 1 0 Median 0.96791 0.9426 NaN 1 0 Median NaN NaN NaN 0 0 Median 4454000 2144500 2309400 0 0 0 2345200 1083700 1261500 0 0 0 1089400 604350 485010 1019400 456480 562910 0 0 0 29936 1007 31475 156264;156265;156266 157144 157144 1 SFSTASAITPSVSR MSRQSSVSFRSGGSRSFSTASAITPSVSRT RSFSTASAITPSVSRTSFTSVSRSGGGGGG R S F S R T 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 5 2 0 0 1 0 0 14 0 1409.7151 CON__P13647;P13647;F8VV57 CON__P13647 16 29 KRT5 Keratin, type II cytoskeletal 5 no no 2 3.4358E-34 166.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 7 4 2 0.067959 0.068213 123.77 15 Median 0.16724 0.16156 213.28 3 3 Median 0.04394 0.036272 201.2 2 2 Median 0.043716 0.046023 NaN 1 1 Median 0.057404 0.049138 99.444 4 4 Median 0.099799 0.1056 73.755 4 4 Median 0.020951 0.016329 NaN 1 1 Median 72894000 66781000 6113400 17300000 14338000 2962000 7630200 7338700 291510 18316000 17486000 829380 10160000 9323900 835760 11533000 10533000 1000200 7955700 7761100 194620 + 29937 757 31476 156267;156268;156269;156270;156271;156272;156273;156274;156275;156276;156277;156278;156279;156280;156281;156282;156283;156284;156285;156286;156287 157145;157146;157147;157148;157149;157150;157151;157152;157153;157154;157155;157156;157157;157158;157159;157160;157161;157162;157163;157164;157165;157166;157167;157168;157169;157170 157149 26 SFTDLYIQIIR KVALLDFGATREYDRSFTDLYIQIIRAAAD EYDRSFTDLYIQIIRAAADRDRETVRAKSI R S F I R A 0 1 0 1 0 1 0 0 0 3 1 0 0 1 0 1 1 0 1 0 0 0 11 0 1367.7449 Q8NI60 Q8NI60 517 527 ADCK3 Atypical kinase ADCK3, mitochondrial yes yes 2 0.008153 41.029 By MS/MS 2 1.7946 1.8059 52.245 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7946 1.8059 52.245 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4227600 1486200 2741400 0 0 0 0 0 0 4227600 1486200 2741400 0 0 0 0 0 0 0 0 0 29938 3449 31477 156288;156289 157171;157172 157172 2 SFTETMSSLSPGKPWQTK GEYDPRRHRYDHHQRSFTETMSSLSPGKPW ETMSSLSPGKPWQTKLSSAGLIYLHFGHKL R S F T K L 0 0 0 0 0 1 1 1 0 0 1 2 1 1 2 4 3 1 0 0 0 0 18 1 2010.9721 Q9HB07;F8VQQ3 Q9HB07 111 128 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 3 8.9283E-07 80.738 By MS/MS 1 0.73101 0.67838 NaN 1 Median 0.73101 0.67838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16111000 8362200 7748700 16111000 8362200 7748700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29939 4014 31478 156290 157173 157173 1 SFTPDHVVYAR ERREKLKTSRDKLRKSFTPDHVVYARSKTA KLRKSFTPDHVVYARSKTAVYKVPPFTFHV K S F A R S 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 2 0 0 11 0 1290.6357 Q6NZI2 Q6NZI2 300 310 PTRF Polymerase I and transcript release factor yes yes 3 0.0024666 39.266 By MS/MS By matching By matching 1 1 1 0.85112 0.95901 30.517 3 Plateau 0.74028 0.73858 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2358 1.2452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85112 0.7296 NaN 1 0 Median 6601800 3374300 3227400 2820200 1645800 1174400 0 0 0 2835400 1279400 1556000 0 0 0 0 0 0 946210 449180 497030 29940 3147 31479 156291;156292;156293 157174 157174 1 SFTPHQQAHIPNSIMTILEASGK DKCPELREPLLAHVRSFTPHQQAHIPNSIM HIPNSIMTILEASGKQEPEAKEAPAGPLEE R S F G K Q 2 0 1 0 0 2 1 1 2 3 1 1 1 1 2 3 2 0 0 0 0 0 23 0 2506.2638 Q92797 Q92797 1081 1103 SYMPK Symplekin yes yes 3;4 4.295E-12 59.356 By MS/MS 2 0.66046 0.71043 14.183 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66046 0.71043 14.183 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11275000 6787400 4488100 0 0 0 0 0 0 11275000 6787400 4488100 0 0 0 0 0 0 0 0 0 29941 3558 31480 156294;156295 157175;157176;157177 157175 3 SFTSEDDLVK RVPKIAPDVLRKMAKSFTSEDDLVKLQILN RKMAKSFTSEDDLVKLQILNLGAKLYLTNS K S F V K L 0 0 0 2 0 0 1 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 10 0 1139.5346 O00203 O00203 524 533 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.026204 35.295 By matching By MS/MS 1 1 1.1128 1.0209 7.1168 2 Median 0.98526 0.97083 NaN 1 0 Median 1.2568 1.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8663500 4024400 4639000 3612100 1550200 2061800 5051400 2474200 2577200 0 0 0 0 0 0 0 0 0 0 0 0 29942 1447 31481 156296;156297 157178 157178 1 SFTTTIHK SGPQFITNSEEVRLRSFTTTIHKVNSMVAY SEEVRLRSFTTTIHKVNSMVAYKIPVND__ R S F H K V 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 3 0 0 0 0 0 8 0 933.49198 Q13257 Q13257 185 192 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 2 0.03399 38.16 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.2191 1.1707 13.405 5 Median 1.2589 1.1717 NaN 1 0 Median 1.0284 0.87584 NaN 1 0 Median 1.0271 1.0739 12.43 2 0 Median 1.4327 1.1707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8976600 4072700 4903900 4678200 2152400 2525800 1469600 610110 859530 2555700 1192400 1363300 273020 117760 155260 0 0 0 0 0 0 29943 2801 31482 156298;156299;156300;156301;156302 157179;157180 157179 2 SFTVDIR AKKQLLHLAEEKQTKSFTVDIRAKPEYHKF LAEEKQTKSFTVDIRAKPEYHKFLIGKGGG K S F I R A 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 7 0 836.43922 Q00341;A0A024R4E5;H0Y394;H7C2D1;H7BZC3 Q00341 727 733 HDLBP Vigilin yes no 2 0.0083653 86.086 By MS/MS By MS/MS By matching 1 1 1 1.1524 1.0169 12.522 3 Median 1.2933 1.2158 NaN 1 0 Median 1.1333 0.9551 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1524 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15812000 7824300 7988100 9305200 4431600 4873600 5532000 2878300 2653700 0 0 0 975220 514420 460810 0 0 0 0 0 0 29944 4 31483 156303;156304;156305 157181;157182;157183 157181 3 SFTVMELVK REQQILTLFRENFEKSFTVMELVKIIYKNT RENFEKSFTVMELVKIIYKNTPENLHEMAK K S F V K I 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 1 0 0 2 0 0 9 0 1052.5576 Q53H82 Q53H82 235 243 LACTB2 Beta-lactamase-like protein 2 yes yes 2 0.0078737 50.607 By MS/MS 2 0.95191 0.89361 6.2585 2 Median 0.95191 0.89361 6.2585 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8472700 4441500 4031200 8472700 4441500 4031200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29945 3032 31484 156306;156307 157184 157184 1 SFVDAEVDVTR IKTDLDDDITALKQRSFVDAEVDVTRDIVS LKQRSFVDAEVDVTRDIVSRERVWRTRTTI R S F T R D 1 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 3 0 0 11 0 1236.5986 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3 Q6P1J9 212 222 CDC73 Parafibromin yes no 2 0.01596 55.567 By MS/MS 1 1.209 1.0116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.209 1.0116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3411300 1354400 2057000 0 0 0 0 0 0 0 0 0 3411300 1354400 2057000 0 0 0 0 0 0 29946 3150 31485 156308 157185 157185 1 SFVDKVGESNNMV RVPVLGSLLNLPGIRSFVDKVGESNNMV__ IRSFVDKVGESNNMV_______________ R S F M V - 0 0 2 1 0 0 1 1 0 0 0 1 1 1 0 2 0 0 0 3 0 0 13 1 1424.6606 Q9Y3E0;G3V1U5 Q9Y3E0 126 138 GOLT1B Vesicle transport protein GOT1B yes no 2 3.1324E-06 104.79 By MS/MS By matching 2 1 1.3036 1.2945 12.985 3 Median 1.1885 1.1867 12.289 2 0 Median 1.6082 1.4026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50328000 24386000 25942000 45680000 22258000 23422000 4647700 2127700 2520000 0 0 0 0 0 0 0 0 0 0 0 0 29947 4425 31486;31487 156309;156310;156311 157186;157187;157188 157187 1975 3 SFVEFILEPLYK TRKFTKKAPTSSSQRSFVEFILEPLYKILA SQRSFVEFILEPLYKILAQVVGDVDTSLPR R S F Y K I 0 0 0 0 0 0 2 0 0 1 2 1 0 2 1 1 0 0 1 1 0 0 12 0 1483.7963 Q15029 Q15029 368 379 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0059418 39.709 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1.0751 0.92773 22.594 7 Median 1.6062 1.619 NaN 1 0 Median 1.0624 0.94039 3.857 2 0 Median 0.76362 0.79689 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89309 0.92353 NaN 1 0 Median 1.0877 0.94017 1.8828 2 0 Median 8240800 4251300 3989500 1369900 672670 697240 1101300 516740 584600 1436700 834330 602330 0 0 0 4116200 2123700 1992500 216700 103860 112840 29948 2917 31488 156312;156313;156314;156315;156316;156317;156318 157189;157190;157191;157192;157193 157191 5 SFVELSGAER RGDGGKMAAAGALERSFVELSGAERERPRH GALERSFVELSGAERERPRHFREFTVCSIG R S F E R E 1 1 0 0 0 0 2 1 0 0 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1093.5404 Q12769;G3V198;E9PR16;E9PSI3 Q12769 44 53 NUP160 Nuclear pore complex protein Nup160 yes no 2 2.2942E-08 169.12 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.0424 1.0949 55.031 6 Plateau NaN NaN NaN 0 0 Median 1.1829 1.0092 NaN 1 0 Median 1.0424 1.1267 2.5182 2 0 Median 1.1578 1.0004 16.223 2 0 Median NaN NaN NaN 0 0 Median 0.35726 0.27833 NaN 1 0 Median 57023000 27659000 29364000 0 0 0 3180300 1397000 1783200 43225000 21561000 21665000 9793300 4139300 5654000 0 0 0 824160 561950 262200 29949 2756 31489 156319;156320;156321;156322;156323;156324 157194;157195;157196;157197;157198;157199;157200 157196 7 SFVLNLGK GECLRVRGEVAPDAKSFVLNLGKDSNNLCL EVAPDAKSFVLNLGKDSNNLCLHFNPRFNA K S F G K D 0 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 8 0 876.5069 P09382 P09382 30 37 LGALS1 Galectin-1 yes yes 2 0.0094539 60.788 By MS/MS By matching By matching 1 1 1 1.2199 1.0004 9.6178 3 Median 0.97723 0.88049 NaN 1 0 Median 1.2917 1.0631 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2199 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68551000 33458000 35093000 54502000 27440000 27061000 13399000 5730200 7669200 0 0 0 650460 288080 362390 0 0 0 0 0 0 29950 1913 31490 156325;156326;156327 157201;157202;157203 157202 3 SFVQGLGVASDVVR RELRLRATRAFVAARSFVQGLGVASDVVRK RSFVQGLGVASDVVRKVAQVPLGPECSRAV R S F V R K 1 1 0 1 0 1 0 2 0 0 1 0 0 1 0 2 0 0 0 4 0 0 14 0 1432.7674 H7C024;H7C410;P35052 H7C024 150 163 GPC1 Glypican-1;Secreted glypican-1 yes no 2 3.7924E-05 94.616 By MS/MS 1 1.101 1.1567 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.101 1.1567 NaN 1 1 Median NaN NaN NaN 0 0 Median 3401300 1565900 1835400 0 0 0 0 0 0 0 0 0 0 0 0 3401300 1565900 1835400 0 0 0 29951 1255 31491 156328 157204 157204 1 SFYGSTLFLCR SLFSRVSLRLVGLKKSFYGSTLFLCRRPTP GLKKSFYGSTLFLCRRPTPQDSPIFLPVDD K S F C R R 0 1 0 0 1 0 0 1 0 0 2 0 0 2 0 2 1 0 1 0 0 0 11 0 1349.6438 P49327;A0A0U1RQF0 P49327 1394 1404 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00016096 90.629 By matching By MS/MS 1 3 1.5033 1.2675 6.4493 4 Median 1.1835 1.1885 NaN 1 0 Median 1.5039 1.2703 5.3371 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6120800 2482200 3638500 1590900 743020 847860 4529900 1739200 2790700 0 0 0 0 0 0 0 0 0 0 0 0 29952 2377 31492 156329;156330;156331;156332 157205;157206;157207 157205 3 SFYPEEVSSMVLTK AGRPKVQVEYKGETKSFYPEEVSSMVLTKM KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN K S F T K M 0 0 0 0 0 0 2 0 0 0 1 1 1 1 1 3 1 0 1 2 0 0 14 0 1615.7804 P11142;E9PKE3;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 113 126 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 1.5379E-15 119.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 3 3 2 3 1.0173 0.92653 9.2441 26 Median 1.045 0.98645 5.7052 9 1 Median 1.0054 0.85233 4.887 7 1 Median 0.92013 0.92511 4.2207 3 0 Median 1.0608 0.89893 3.4501 3 0 Median 1.1788 1.1995 NaN 1 0 Median 1.1044 0.90999 14.414 3 0 Median 470370000 226030000 244340000 289990000 140800000 149190000 34728000 16714000 18014000 109760000 54741000 55015000 13250000 6240500 7009200 19537000 6103400 13433000 3109700 1429000 1680700 29953 1950 31493;31494 156333;156334;156335;156336;156337;156338;156339;156340;156341;156342;156343;156344;156345;156346;156347;156348;156349;156350;156351;156352;156353;156354;156355;156356;156357;156358;156359 157208;157209;157210;157211;157212;157213;157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224;157225;157226;157227;157228;157229;157230;157231;157232;157233;157234;157235;157236;157237;157238;157239;157240;157241;157242;157243;157244;157245 157237 732 38 SFYPMLR SEEDYSCTQANNFARSFYPMLRYTNGPPPT TQANNFARSFYPMLRYTNGPPPT_______ R S F L R Y 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 7 0 912.45276 Q8WXH0;A0A0C4DGK3 Q8WXH0 6871 6877 SYNE2 Nesprin-2 yes no 2 0.021008 59.641 By MS/MS 1 0.52559 0.58007 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52559 0.58007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2659000 1731700 927220 0 0 0 0 0 0 2659000 1731700 927220 0 0 0 0 0 0 0 0 0 29954 3521 31495 156360 157246 157246 1 SFYQFQHYR LLRVEEINPEYMLEKSFYQFQHYRAIPGVV EYMLEKSFYQFQHYRAIPGVVEKVKNSEEQ K S F Y R A 0 1 0 0 0 2 0 0 1 0 0 0 0 2 0 1 0 0 2 0 0 0 9 0 1274.5833 P42285 P42285 588 596 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 0.00021124 107.32 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 4 2 2 2 1.2172 1.177 15.517 13 Median 1.3979 1.3513 19.532 2 0 Median 1.2998 1.1113 2.7065 2 1 Median 1.1948 1.3134 7.5804 3 0 Median 1.2253 1.0404 9.5403 2 0 Median 1.0991 1.1512 7.8356 2 0 Median 1.3979 1.1473 35.252 2 0 Median 76725000 33134000 43591000 11025000 4562900 6461600 5232200 2364900 2867300 42957000 18385000 24572000 10452000 4847200 5605200 5723500 2546500 3177000 1335500 427380 908090 29955 2309 31496 156361;156362;156363;156364;156365;156366;156367;156368;156369;156370;156371;156372;156373;156374 157247;157248;157249;157250;157251;157252;157253;157254;157255;157256;157257;157258;157259 157249 13 SFYSSHYAR RQPEYRDMRDGFRRKSFYSSHYARERSPYK DGFRRKSFYSSHYARERSPYKRDNTFFRES K S F A R E 1 1 0 0 0 0 0 0 1 0 0 0 0 1 0 3 0 0 2 0 0 0 9 0 1116.4989 F8W0Q9;Q8NEY8;F8WF16;B7Z8L1;F8W6A0;F8VPY7;F8VWU8 F8W0Q9 128 136 PPHLN1 Periphilin-1 yes no 2 0.0021293 74.127 By MS/MS By matching 1 1 1.0258 0.9557 27.129 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1517 1.1578 NaN 1 0 Median 0.91371 0.78888 NaN 1 0 Median 2648300 1148300 1500000 0 0 0 0 0 0 0 0 0 0 0 0 1874400 786240 1088100 773950 362100 411850 29956 1080 31497 156375;156376 157260;157261 157261 2 SGAAAAAVTTETAQHAQGAKPQVQPQK LASSSWRVCQPWRWKSGAAAAAVTTETAQH AQHAQGAKPQVQPQKRKPKTGILMLNMGGP K S G Q K R 8 0 0 0 0 5 1 2 1 0 0 2 0 0 2 1 3 0 0 2 0 0 27 1 2645.3521 P22830;K7ELX4;K7EJM8 P22830 38 64 FECH Ferrochelatase, mitochondrial yes no 4 0.055388 8.7335 By MS/MS 1 0.58662 0.63925 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58662 0.63925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2944100 1622600 1321500 0 0 0 0 0 0 2944100 1622600 1321500 0 0 0 0 0 0 0 0 0 29957 2106 31498 156377 157262;157263 157263 2 SGAAQGLAEVMAGLGVEK WLMETLTYEQSSVDRSGAAQGLAEVMAGLG AQGLAEVMAGLGVEKLEKLMPEIVATASKV R S G E K L 4 0 0 0 0 1 2 4 0 0 2 1 1 0 0 1 0 0 0 2 0 0 18 0 1686.8611 Q92616 Q92616 1714 1731 GCN1L1 Translational activator GCN1 yes yes 2 2.0513E-11 86.291 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.1209 1.0402 31.119 6 Median 0.82346 0.79308 NaN 1 1 Median 1.1209 0.98719 0.47786 2 1 Median 1.0206 1.1333 NaN 1 0 Median 1.207 1.0924 NaN 1 0 Median 1.9381 1.9938 NaN 1 0 Median NaN NaN NaN 0 0 Median 25968000 12917000 13050000 3715100 1661500 2053700 18383000 9420300 8962200 3002900 1529900 1473000 112720 44279 68442 754450 261260 493190 0 0 0 29958 3544 31499 156378;156379;156380;156381;156382;156383 157264;157265;157266 157266 3 SGAEVEAGDAAER AADVSVTHRPPLSPKSGAEVEAGDAAERRA PKSGAEVEAGDAAERRAPEEELPPLDPEEI K S G E R R 4 1 0 1 0 0 3 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 13 0 1260.5582 A0A087WZ13;E9PAU2;Q8IY67;K7EKR9 A0A087WZ13 17 29 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 2 5.9879E-07 105.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 0.89853 0.90431 32.908 7 Median 0.62757 0.62051 57.873 2 0 Median 1.0034 0.8783 18.809 2 0 Median 0.56747 0.5779 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89853 0.95068 NaN 1 1 Median 1.0539 0.90431 NaN 1 0 Median 16684000 9863100 6820500 1198000 717430 480540 2440600 1194700 1245900 11341000 7217000 4123600 0 0 0 866680 266800 599880 837790 467160 370640 29959 90 31500 156384;156385;156386;156387;156388;156389;156390;156391 157267;157268;157269;157270;157271;157272;157273;157274 157269 8 SGAGVPAVILR SVRNQVEDLLATLEKSGAGVPAVILRRPNQ TLEKSGAGVPAVILRRPNQSQPLPPSSLQR K S G L R R 2 1 0 0 0 0 0 2 0 1 1 0 0 0 1 1 0 0 0 2 0 0 11 0 1038.6186 Q92542;Q5T205;H0Y6T7;H0Y3Z4 Q92542 404 414 NCSTN Nicastrin yes no 2 0.015891 36.557 By MS/MS 2 0.80976 0.70162 60.406 2 Median NaN NaN NaN 0 0 Median 0.80976 0.70162 60.406 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363000 2795100 3567900 0 0 0 6363000 2795100 3567900 0 0 0 0 0 0 0 0 0 0 0 0 29960 3535 31501 156392;156393 157275 157275 1 SGAHVDFYDK SAQKLLSLLEKDEFKSGAHVDFYDK_____ KDEFKSGAHVDFYDK_______________ K S G D K - 1 0 0 2 0 0 0 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1137.5091 P35270 P35270 252 261 SPR Sepiapterin reductase yes yes 2 0.0047013 52.278 By MS/MS 1 1.1261 1.0677 NaN 1 Median 1.1261 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2442200 1148100 1294100 2442200 1148100 1294100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29961 2241 31502 156394 157276;157277 157277 2 SGAILPKPVK SGRSLVPSRSVIVTRSGAILPKPVKMSFGL VIVTRSGAILPKPVKMSFGLLRVFSIVIPF R S G V K M 1 0 0 0 0 0 0 1 0 1 1 2 0 0 2 1 0 0 0 1 0 0 10 1 1008.6332 Q9H4I9 Q9H4I9 53 62 SMDT1 Essential MCU regulator, mitochondrial yes yes 2 0.0031073 72.485 By MS/MS 1 0.89766 0.63748 NaN 1 Median NaN NaN NaN 0 0 Median 0.89766 0.63748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2909500 1457800 1451700 0 0 0 2909500 1457800 1451700 0 0 0 0 0 0 0 0 0 0 0 0 29962 3965 31503 156395 157278;157279 157278 2 SGALDVLQMK ______________________________ ______________________________ M S G M K E 1 0 0 1 0 1 0 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 10 0 1060.5587 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 2 11 RPSA 40S ribosomal protein SA yes no 2 0.00046389 74.301 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.1756 1.0806 12.292 5 Median 1.1624 1.0806 NaN 1 0 Median 1.1756 1.0011 NaN 1 0 Median 1.2003 1.243 15.169 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2699 1.0723 NaN 1 0 Median 51462000 23332000 28130000 10056000 4691000 5364700 32847000 14839000 18009000 8333300 3739400 4593900 0 0 0 0 0 0 225290 63249 162040 29963 232 31504 156396;156397;156398;156399;156400 157280;157281 157280 2 SGALDVLQMKEEDVLK ______________________________ GALDVLQMKEEDVLKFLAAGTHLGGTNLDF M S G L K F 1 0 0 2 0 1 2 1 0 0 3 2 1 0 0 1 0 0 0 2 0 0 16 1 1773.9183 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 2 17 RPSA 40S ribosomal protein SA yes no 2 4.8909E-47 220.9 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 2 1.1113 0.9916 26.237 11 Median 1.1663 1.081 14.918 3 1 Median 0.9434 0.80409 12.845 3 0 Median 1.0803 1.13 20.13 2 1 Median 1.2392 1.1034 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98508 0.83659 64.466 2 0 Median 258950000 119200000 139750000 35391000 15680000 19712000 198050000 92236000 105810000 15917000 7117800 8798700 8927100 3854100 5072900 0 0 0 667010 315270 351740 29964 232 31505;31506 156401;156402;156403;156404;156405;156406;156407;156408;156409;156410;156411 157282;157283;157284;157285;157286;157287;157288;157289;157290;157291;157292;157293 157293 96 12 SGALPVAWLER RARAFARDFAAHRKKSGALPVAWLERTMRS HRKKSGALPVAWLERTMRSVGLEVYTQSFS K S G E R T 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 11 0 1197.6506 E9PLV6;E9PPZ9;O43292;E9PLG8;E9PM11 E9PLV6 84 94 GPAA1 Glycosylphosphatidylinositol anchor attachment 1 protein yes no 2 0.018812 35.511 By MS/MS By matching 2 1 0.94764 0.94984 97.213 3 Median 0.78004 0.78141 27.606 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.4604 4.0666 NaN 1 0 Median NaN NaN NaN 0 0 Median 6322700 3408000 2914700 5793100 3306800 2486200 0 0 0 0 0 0 0 0 0 529650 101150 428500 0 0 0 29965 964 31507 156412;156413;156414 157294 157294 1 SGAPAAESKEIVR GVFKYVLIRVHSAPRSGAPAAESKEIVRGY PRSGAPAAESKEIVRGYKWAEYHADIYDKV R S G V R G 3 1 0 0 0 0 2 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 13 1 1313.6939 Q9NRX4 Q9NRX4 33 45 PHPT1 14 kDa phosphohistidine phosphatase yes yes 3 0.0005954 49.929 By MS/MS By MS/MS 1 1 1.1695 1.0882 34.165 2 Median 0.87153 0.85462 NaN 1 0 Median 1.5693 1.3855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2818200 1400700 1417500 1634900 863740 771190 1183200 536920 646300 0 0 0 0 0 0 0 0 0 0 0 0 29966 4092 31508 156415;156416 157295;157296 157295 2 SGAQASSTPLSPTR ______________________________ RSGAQASSTPLSPTRITRLQEKEDLQELND R S G T R I 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 4 2 0 0 0 0 0 14 0 1358.679 P02545;Q3BDU5 P02545 12 25 LMNA Prelamin-A/C;Lamin-A/C no no 2 5.6355E-08 156.51 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 5 0.87778 0.82053 24.46 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79481 0.82053 1.5027 2 0 Median 1.4344 1.2245 35.659 2 0 Median 0.65569 0.68889 9.8354 5 0 Median 1.0948 0.88722 7.69 5 0 Median 84798000 48781000 36017000 0 0 0 0 0 0 17579000 9640300 7938400 6048300 2684400 3363900 34005000 24064000 9940400 27166000 12392000 14774000 29967 1834;3010 31509 156417;156418;156419;156420;156421;156422;156423;156424;156425;156426;156427;156428;156429;156430 157297;157298;157299;157300;157301;157302;157303;157304;157305;157306;157307;157308;157309;157310;157311;157312;157313;157314;157315;157316;157317;157318;157319;157320;157321;157322;157323;157324;157325;157326 157303 30 SGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASAAPAASAAAAL PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 11 1 0 0 0 0 0 1 0 0 1 0 0 0 2 4 1 0 0 0 0 0 21 0 1768.9068 A0A0M3HER2 A0A0M3HER2 18 38 yes yes 2 3.9684E-25 136.17 By matching By MS/MS By matching 1 2 1 0.62319 0.581 10.979 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7175 0.69857 NaN 1 0 Median 0.55147 0.55443 2.3578 2 0 Median 0.69195 0.59879 NaN 1 0 Median 44610000 27491000 17118000 0 0 0 0 0 0 0 0 0 777740 231750 545990 43110000 26890000 16220000 721680 369650 352030 29968 296 31510 156431;156432;156433;156434 157327;157328;157329;157330;157331;157332;157333 157329 7 SGASEANLIVAK RSQHDILQMICSKRRSGASEANLIVAKSWA KRRSGASEANLIVAKSWADVVKLGAKQTQT R S G A K S 3 0 1 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1158.6245 P46013 P46013 648 659 MKI67 Antigen KI-67 yes yes 2 0.0036159 68.847 By MS/MS 1 0.53776 0.60887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53776 0.60887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21041000 15373000 5668600 0 0 0 0 0 0 21041000 15373000 5668600 0 0 0 0 0 0 0 0 0 29969 2335 31511 156435 157334 157334 1 SGASGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASGASAAPAASAA PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 12 1 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 24 0 1983.9974 Q7Z7K6 Q7Z7K6 18 41 CENPV Centromere protein V yes yes 2;3 8.6411E-16 67.605 By MS/MS 2 0.63709 0.67048 4.4339 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63709 0.67048 4.4339 2 0 Median NaN NaN NaN 0 0 Median 8618900 5259600 3359300 0 0 0 0 0 0 0 0 0 0 0 0 8618900 5259600 3359300 0 0 0 29970 3261 31512 156436;156437 157335;157336 157335 2 SGASGPENFQVGSMPPAQQQITSGQMHR GKVEHGSVALPAIMRSGASGPENFQVGSMP MPPAQQQITSGQMHRGHMPPLTSAQQALTG R S G H R G 2 1 1 0 0 5 1 4 1 1 0 0 2 1 3 4 1 0 0 1 0 0 28 0 2926.345 Q9Y490 Q9Y490 455 482 TLN1 Talin-1 yes yes 3 6.7886E-37 94.73 By MS/MS By MS/MS By matching 2 2 1 0.83936 0.72196 16.485 5 Median 0.68227 0.6454 15.854 2 0 Median 0.86099 0.72589 1.7114 2 0 Median 0.83936 0.91899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50814000 30946000 19868000 35575000 22256000 13319000 6891200 3957700 2933500 8347600 4731600 3616000 0 0 0 0 0 0 0 0 0 29971 4441 31513 156438;156439;156440;156441;156442 157337;157338;157339;157340;157341;157342;157343 157338 7 SGASVVAIR MDAILTEAIKACFQKSGASVVAIRKYIIHK KACFQKSGASVVAIRKYIIHKYPSLELERR K S G I R K 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 858.49232 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 176 184 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0029859 68.224 By matching By matching By MS/MS By MS/MS 1 2 1 3 1.2775 1.0713 21.908 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74361 0.78044 NaN 1 0 Median 1.0015 0.84754 33.135 2 0 Median 0.86294 0.88542 NaN 1 0 Median 1.3648 1.155 1.8181 3 0 Median 20481000 10070000 10411000 0 0 0 0 0 0 4844400 2595700 2248800 1431900 705310 726590 8578400 4541500 4037000 5626300 2227800 3398500 29972 3075 31514 156443;156444;156445;156446;156447;156448;156449 157344;157345;157346 157344 3 SGASVVAIRK MDAILTEAIKACFQKSGASVVAIRKYIIHK ACFQKSGASVVAIRKYIIHKYPSLELERRG K S G R K Y 2 1 0 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 0 2 0 0 10 1 986.58728 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 176 185 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0074885 50.607 By MS/MS By MS/MS 1 2 1.1277 0.99357 19.199 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7996 0.88449 NaN 1 0 Median 1.2565 1.1308 18.298 2 0 Median 3511900 1697500 1814400 0 0 0 0 0 0 0 0 0 0 0 0 2530800 1249300 1281500 981090 448220 532870 29973 3075 31515 156450;156451;156452 157347;157348 157347 2 SGAVEETFR PEFKEEKLQLQPKPRSGAVEETFRIVKDSL LQPKPRSGAVEETFRIVKDSLSDDVVKATQ R S G F R I 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 9 0 994.47197 Q6YN16 Q6YN16 307 315 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 2 0.00073077 101.64 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.3216 1.2229 21.558 6 Median 1.3485 1.3635 20.206 2 0 Median 1.5084 1.3043 4.2897 2 0 Median 0.99437 0.99594 NaN 1 0 Median 0.98959 0.86129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16131000 7213600 8917500 3686200 1613200 2072900 8789300 3796200 4993100 1560700 763680 797020 2094900 1040500 1054500 0 0 0 0 0 0 29974 3195 31516 156453;156454;156455;156456;156457;156458 157349;157350;157351;157352;157353 157353 5 SGAVQGAGSLGPGSPVR LVKKLEKQNEQLRSRSGAVQGAGSLGPGSP AVQGAGSLGPGSPVRAGASIPSSGAASPRG R S G V R A 2 1 0 0 0 1 0 5 0 0 1 0 0 0 2 3 0 0 0 2 0 0 17 0 1495.7743 Q9P270 Q9P270 35 51 SLAIN2 SLAIN motif-containing protein 2 yes yes 2 3.2797E-12 102.62 By MS/MS 2 0.71406 0.62044 9.7468 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71406 0.62044 9.7468 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7856900 4373600 3483300 0 0 0 0 0 0 0 0 0 7856900 4373600 3483300 0 0 0 0 0 0 29975 4216 31517 156459;156460 157354;157355 157354 2 SGAWDESGVFIYTTSNHIK KLDALCNIHENIRVKSGAWDESGVFIYTTS DESGVFIYTTSNHIKYAVTTGDHGIIRTLD K S G I K Y 1 0 1 1 0 0 1 2 1 2 0 1 0 1 0 3 2 1 1 1 0 0 19 0 2110.996 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3 P53621 532 550 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 0.00048698 32.565 By MS/MS 3 0.88178 0.8294 19.246 3 Median 0.88178 0.8294 19.246 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9697300 4856500 4840800 9697300 4856500 4840800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29976 2473 31518 156461;156462;156463 157356;157357 157356 2 SGAYLIPLLER SGRDILARAKNGTGKSGAYLIPLLERLDLK GTGKSGAYLIPLLERLDLKKDNIQAMVIVP K S G E R L 1 1 0 0 0 0 1 1 0 1 3 0 0 0 1 1 0 0 1 0 0 0 11 0 1230.6972 P26196;Q8IV96 P26196 147 157 DDX6 Probable ATP-dependent RNA helicase DDX6 yes no 2 0.013692 37.344 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 3 1 1 1 1.1054 1.0653 18.757 8 Median 1.0647 1.0385 NaN 1 0 Median 1.2843 1.0928 NaN 1 0 Median 0.84801 0.87406 19.319 3 0 Median 1.1158 0.97115 NaN 1 0 Median 1.2829 1.2898 NaN 1 0 Median 1.5766 1.3511 NaN 1 0 Median 19483000 9535500 9947700 5866800 2786900 3079900 4008900 1910100 2098800 6257100 3473400 2783700 506070 244680 261390 1855800 727950 1127800 988580 392400 596180 29977 2140 31519 156464;156465;156466;156467;156468;156469;156470;156471 157358;157359 157359 2 SGDAAIVDMVPGK RRSGKKLEDGPKFLKSGDAAIVDMVPGKPM LKSGDAAIVDMVPGKPMCVESFSDYPPLGR K S G G K P 2 0 0 2 0 0 0 2 0 1 0 1 1 0 1 1 0 0 0 2 0 0 13 0 1258.6227 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 396 408 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2 1.0083E-06 98.943 By MS/MS By matching By MS/MS By MS/MS By matching 4 2 1 5 1 1.2185 1.0991 90.27 13 Median 0.98531 0.96242 27.649 4 2 Median 1.5012 1.2611 19.447 2 0 Median 2.0747 1.992 NaN 1 0 Median 1.0341 0.86467 25.725 5 0 Median NaN NaN NaN 0 0 Median 25.836 23.583 NaN 1 0 Median 102060000 42379000 59684000 32295000 15104000 17191000 9482300 3357700 6124600 26044000 8301900 17742000 30897000 15538000 15359000 0 0 0 3344600 77412 3267200 29978 2632 31520;31521 156472;156473;156474;156475;156476;156477;156478;156479;156480;156481;156482;156483;156484 157360;157361;157362;157363;157364;157365;157366;157367;157368;157369 157365 1296 10 SGDEMIFDPTMSK ______________________________ ______________________________ M S G S K K 0 0 0 2 0 0 1 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 13 0 1456.6214 P20042 P20042 2 14 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0015356 52.79 By MS/MS 1 1.1178 1.1248 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1178 1.1248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1995500 847060 1148400 0 0 0 0 0 0 1995500 847060 1148400 0 0 0 0 0 0 0 0 0 29979 2072 31522 156485 157370;157371 157371 2 SGDETPGSEVPGDK EQGLGKREEDEPEERSGDETPGSEVPGDKA RSGDETPGSEVPGDKAAEEQGDDQDSEKSK R S G D K A 0 0 0 2 0 0 2 3 0 0 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1373.5947 Q1KMD3;H3BQZ7 Q1KMD3 161 174 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.00098277 53.237 By MS/MS By matching By MS/MS 1 1 2 0.55391 0.5711 24.797 4 Median NaN NaN NaN 0 0 Median 0.97742 0.8587 NaN 1 0 Median 0.58821 0.60967 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5148 0.51063 6.587 2 0 Median NaN NaN NaN 0 0 Median 12041000 7082600 4958300 0 0 0 1549000 825970 723030 892670 512140 380540 0 0 0 9599300 5744500 3854700 0 0 0 29980 3002 31523 156486;156487;156488;156489 157372;157373;157374 157373 3 SGDETPGSEVPGDKAAEEQGDDQDSEK EQGLGKREEDEPEERSGDETPGSEVPGDKA DKAAEEQGDDQDSEKSKPAGSDGERRGVKR R S G E K S 2 0 0 5 0 2 5 4 0 0 0 2 0 0 2 3 1 0 0 1 0 0 27 1 2776.1431 Q1KMD3;H3BQZ7 Q1KMD3 161 187 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 1.1886E-08 42.708 By MS/MS By matching 1 1 0.72752 0.7321 36.23 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50591 0.56664 NaN 1 0 Median 1.0462 0.94587 NaN 1 0 Median 8689900 5443100 3246800 0 0 0 0 0 0 0 0 0 0 0 0 7450000 4916700 2533300 1239900 526360 713520 29981 3002 31524 156490;156491 157375;157376 157375 2 SGDGATEQAAEYVPEK ______________________________ GDGATEQAAEYVPEKVKKAEKKLEENPYDL M S G E K V 3 0 0 1 0 1 3 2 0 0 0 1 0 0 1 1 1 0 1 1 0 0 16 0 1650.7373 Q12996;E9PJ06 Q12996 2 17 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 2.7547E-10 148.78 By MS/MS By matching 1 1 0.85331 0.78888 0.77048 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79172 0.79319 NaN 1 0 Median 0.91969 0.7846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21187000 11674000 9512200 0 0 0 0 0 0 19169000 10447000 8721600 2018000 1227300 790610 0 0 0 0 0 0 29982 2777 31525 156492;156493 157377;157378 157377 2 SGDHLHNDSQIEADFR ______________________________ GDHLHNDSQIEADFRLNDSHKHKDKHKDRE M S G F R L 1 1 1 3 0 1 1 1 2 1 1 0 0 1 0 2 0 0 0 0 0 0 16 0 1839.8136 P11387 P11387 2 17 TOP1 DNA topoisomerase 1 yes yes 2;3 3.5316E-87 262.43 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 5 6 2 2 1.3179 1.1264 21.19 17 Median 1.6147 1.5614 NaN 1 0 Median 2.621 2.284 NaN 1 0 Median 1.0693 1.1301 16.425 5 1 Median 1.324 1.1222 8.8354 6 0 Median 1.1601 1.1941 15.543 2 0 Median 1.3438 1.0669 6.7819 2 0 Median 563570000 263470000 300100000 4074500 1035900 3038600 1896600 717090 1179500 420840000 203250000 217590000 116580000 48749000 67833000 17359000 8469000 8890500 2814700 1246000 1568700 29983 1962 31526 156494;156495;156496;156497;156498;156499;156500;156501;156502;156503;156504;156505;156506;156507;156508;156509;156510 157379;157380;157381;157382;157383;157384;157385;157386;157387;157388;157389;157390;157391;157392;157393;157394;157395;157396;157397 157386 19 SGDITYGQFAQLYR NMRFLRERLTDLEQRSGDITYGQFAQLYRS RSGDITYGQFAQLYRSLMYSAQKTMDLPFL R S G Y R S 1 1 0 1 0 2 0 2 0 1 1 0 0 1 0 1 1 0 2 0 0 0 14 0 1617.7787 P19174 P19174 205 218 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 7.689E-08 100.48 By MS/MS 3 1.1154 1.0626 2.4879 2 Median 1.1154 1.0626 2.4879 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17647000 8487400 9159500 17647000 8487400 9159500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29984 2062 31527 156511;156512;156513 157398;157399;157400;157401 157399 4 SGDSEVYQLGDVSQK NPVTIFSLATNEMWRSGDSEVYQLGDVSQK SGDSEVYQLGDVSQKTTWHRISVFRPGLRD R S G Q K T 0 0 0 2 0 2 1 2 0 0 1 1 0 0 0 3 0 0 1 2 0 0 15 0 1610.7424 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 67 81 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2;3 1.7203E-10 167.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 3 1 1.2305 1.163 11.415 15 Median 1.0421 0.97622 1.912 3 0 Median 1.4036 1.1712 4.6523 4 0 Median 1.0625 1.0037 1.2721 2 0 Median 1.4204 1.1421 3.4424 2 0 Median 1.2207 1.3172 2.7234 3 0 Median 1.463 1.163 NaN 1 0 Median 478110000 214080000 264030000 109260000 52322000 56934000 49981000 19491000 30489000 192380000 89059000 103320000 31002000 12339000 18663000 91981000 39525000 52455000 3510100 1340800 2169300 29985 2713 31528 156514;156515;156516;156517;156518;156519;156520;156521;156522;156523;156524;156525;156526;156527;156528 157402;157403;157404;157405;157406;157407;157408;157409;157410;157411;157412;157413;157414;157415;157416;157417;157418;157419;157420;157421;157422;157423;157424;157425;157426;157427;157428 157408 27 SGDWMIDYVSNR RPKNDLGHPFCNNLRSGDWMIDYVSNRLIS NLRSGDWMIDYVSNRLISRSGTIAEVGKWL R S G N R L 0 1 1 2 0 0 0 1 0 1 0 0 1 0 0 2 0 1 1 1 0 0 12 0 1441.6296 P35573 P35573 962 973 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 3.2995E-05 96.342 By MS/MS By matching 1 1 1.1977 1.0986 16.764 2 Median 1.0218 0.97577 NaN 1 0 Median 1.4039 1.2368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5545200 2225700 3319500 5045500 2006800 3038700 499660 218900 280770 0 0 0 0 0 0 0 0 0 0 0 0 29986 2243 31529 156529;156530 157429;157430 157430 2 SGEDEQQEQTIAEDLVVTK ______________________________ EQQEQTIAEDLVVTKYKMGGDIANRVLRSL M S G T K Y 1 0 0 2 0 3 4 1 0 1 1 1 0 0 0 1 2 0 0 2 0 0 19 0 2117.9964 Q9UQ80;F8VR77 Q9UQ80 2 20 PA2G4 Proliferation-associated protein 2G4 yes no 2;3 8.39E-18 140.82 By matching By matching By MS/MS By MS/MS 2 1 3 3 1.0294 0.96683 4.0751 9 Median 1.0458 0.99995 4.288 2 0 Median 1.0326 0.90579 NaN 1 0 Median 1.0063 0.96683 2.0921 3 0 Plateau 1.0898 0.9284 3.0128 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58081000 26562000 31519000 6593400 3108500 3484900 321360 126610 194750 44449000 20289000 24160000 6717600 3037900 3679700 0 0 0 0 0 0 29987 4360 31530 156531;156532;156533;156534;156535;156536;156537;156538;156539 157431;157432;157433;157434;157435;157436;157437 157435 7 SGEDESQEDVLMDEAPSNLSQASTLQANR ERDGGSGNSTIIVSRSGEDESQEDVLMDEA APSNLSQASTLQANREDSMNILDPEDEEEH R S G N R E 3 1 2 3 0 3 4 1 0 0 3 0 1 0 1 5 1 0 0 1 0 0 29 0 3120.3789 Q7Z6Z7 Q7Z6Z7 2372 2400 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 3.4885E-14 56.021 By MS/MS 1 0.73455 0.72221 NaN 1 Median 0.73455 0.72221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9347200 5252400 4094800 9347200 5252400 4094800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29988 3253 31531 156540 157438 157438 1 SGEEAVTVLEDLEK LPEELQSWVRGHHPKSGEEAVTVLEDLEKG KSGEEAVTVLEDLEKGLEPEPQVPGPAHGP K S G E K G 1 0 0 1 0 0 4 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 14 0 1517.7461 I3L4J6;Q9UNY5 I3L4J6 146 159 ZNF232 Zinc finger protein 232 yes no 2;3 0.019787 27.481 By matching By matching By MS/MS By matching 1 2 4 1 0.90039 0.88129 22.676 8 Median 0.68037 0.68973 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.744 0.81052 9.4519 2 0 Median 1.0471 0.92037 7.3651 4 0 Median NaN NaN NaN 0 0 Median 0.6139 0.50969 NaN 1 0 Median 73667000 36372000 37294000 876950 506110 370840 0 0 0 10538000 6343200 4194700 61185000 28867000 32318000 0 0 0 1067300 656060 411200 29989 1292 31532 156541;156542;156543;156544;156545;156546;156547;156548 157439;157440;157441;157442 157442 4 SGEEDEEILFK IHFEPIVSLPEVEVKSGEEDEEILFKERAK VEVKSGEEDEEILFKERAKLYRWDRDVSQW K S G F K E 0 0 0 1 0 0 4 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1294.5929 P49792 P49792 2925 2935 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00018232 77.677 By MS/MS 1 0.9154 0.98004 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9154 0.98004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8593000 4567700 4025200 0 0 0 0 0 0 8593000 4567700 4025200 0 0 0 0 0 0 0 0 0 29990 2401 31533 156549 157443;157444 157444 2 SGEGEVSGLMR YSSAEPHVSGVKRSRSGEGEVSGLMRKVPR KRSRSGEGEVSGLMRKVPRVSLERLDLDLT R S G M R K 0 1 0 0 0 0 2 3 0 0 1 0 1 0 0 2 0 0 0 1 0 0 11 0 1120.5183 Q13263;M0R0K9 Q13263 473 483 TRIM28 Transcription intermediary factor 1-beta yes no 2 1.4963E-65 245.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 3 1 1.0646 0.98159 17.954 16 Median 1.0608 1.0198 12.621 3 0 Median 1.0438 0.90154 11.789 5 0 Median 1.0558 1.096 7.5907 2 0 Median 1.0871 0.93064 4.4845 2 0 Median 1.1163 1.1279 40.109 3 1 Median 1.2122 0.98489 NaN 1 0 Median 185650000 90891000 94756000 47751000 23629000 24121000 46106000 22372000 23733000 50486000 24242000 26244000 7562200 4001900 3560300 31171000 15568000 15603000 2571900 1077200 1494700 29991 2802 31534;31535 156550;156551;156552;156553;156554;156555;156556;156557;156558;156559;156560;156561;156562;156563;156564;156565 157445;157446;157447;157448;157449;157450;157451;157452;157453;157454;157455;157456;157457;157458;157459;157460;157461;157462;157463;157464 157446 1503 20 SGEGMGIR ARSFQPDTGRIEVFRSGEGMGIRLDNASAF GRIEVFRSGEGMGIRLDNASAFQGAVISPH R S G I R L 0 1 0 0 0 0 1 3 0 1 0 0 1 0 0 1 0 0 0 0 0 0 8 0 805.37524 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 399 406 PC Pyruvate carboxylase, mitochondrial yes no 2 0.023837 43.858 By MS/MS 1 0.90972 0.78173 NaN 1 Median NaN NaN NaN 0 0 Median 0.90972 0.78173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1809700 768090 1041600 0 0 0 1809700 768090 1041600 0 0 0 0 0 0 0 0 0 0 0 0 29992 1967 31536 156566 157465;157466 157465 2 SGEGSQHPFGAMNIVR TNGKPSAIFKISGLKSGEGSQHPFGAMNIV GEGSQHPFGAMNIVRTPSVAQIGISVELLD K S G V R T 1 1 1 0 0 1 1 3 1 1 0 0 1 1 1 2 0 0 0 1 0 0 16 0 1685.7944 Q53FT3;A0A087WYW7;E9PPG8 Q53FT3 89 104 C11orf73 Protein Hikeshi yes no 2;3 2.9324E-08 145.23 By MS/MS By MS/MS 3 1 0.86624 0.82713 7.5689 4 Median 0.87584 0.84116 8.2359 3 0 Plateau 1.0207 0.84632 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56240000 29798000 26442000 48423000 26119000 22304000 7816500 3678500 4138000 0 0 0 0 0 0 0 0 0 0 0 0 29993 3028 31537 156567;156568;156569;156570 157467;157468;157469;157470;157471 157470 5 SGEHDFGAAFDGDGDR DPNLTYAADLVETMKSGEHDFGAAFDGDGD GEHDFGAAFDGDGDRNMILGKHGFFVNPSD K S G D R N 2 1 0 4 0 0 1 4 1 0 0 0 0 2 0 1 0 0 0 0 0 0 16 0 1651.6499 P36871;A0A3B3ITK7 P36871 278 293 PGM1 Phosphoglucomutase-1 yes no 3 3.5747E-05 64.52 By MS/MS By matching 1 1 1.1055 1.0082 9.8828 2 Median 1.1272 1.0812 NaN 1 0 Median 1.0842 0.94018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11616000 4668400 6947900 7635200 2804200 4831000 3981100 1864200 2116800 0 0 0 0 0 0 0 0 0 0 0 0 29994 2262 31538 156571;156572 157472;157473 157473 2 SGEHDFGAAFDGDGDRNMILGK DPNLTYAADLVETMKSGEHDFGAAFDGDGD AAFDGDGDRNMILGKHGFFVNPSDSVAVIA K S G G K H 2 1 1 4 0 0 1 5 1 1 1 1 1 2 0 1 0 0 0 0 0 0 22 1 2308.0179 P36871;A0A3B3ITK7 P36871 278 299 PGM1 Phosphoglucomutase-1 yes no 3;4 6.5656E-05 36.111 By MS/MS 2 0.96181 0.96552 5.1356 2 Median 0.96181 0.96552 5.1356 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14857000 7384000 7472800 14857000 7384000 7472800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29995 2262 31539 156573;156574 157474;157475;157476 157475 3 SGEIWAR LFERVLTSGSLPPEKSGEIWARFLAFESNI SGSLPPEKSGEIWARFLAFESNIGDLASIL K S G A R F 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 7 0 817.40825 Q12996;E9PLP8 Q12996 481 487 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.016795 83.614 By MS/MS By MS/MS 1 1 1.2961 1.2139 13.28 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0856 1.1051 NaN 1 1 Median 1.5475 1.3334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13681000 5681900 7998800 0 0 0 0 0 0 11765000 5063900 6700700 1916200 618020 1298200 0 0 0 0 0 0 29996 2777 31540 156575;156576 157477;157478 157477 2 SGELAQEYDKR KNPKERTALFEEISRSGELAQEYDKRKKEM EISRSGELAQEYDKRKKEMVKAEEDTQFNY R S G K R K 1 1 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1294.6153 Q14683;G8JLG1;H0Y7K8 Q14683 161 171 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 3.3439E-05 90.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 3 5 1.088 1.0443 13.292 15 Median 1.0895 1.1155 NaN 1 0 Median 1.4198 1.3365 NaN 1 1 Median 1.027 1.1631 10.74 3 2 Median 1.1609 1.1207 9.1679 2 0 Median 0.89487 1.016 7.5804 3 0 Plateau 1.1039 0.96676 5.2781 5 0 Median 52338000 24946000 27392000 1027400 402880 624500 3646500 1520500 2126000 14492000 6504900 7986900 2754500 1116700 1637800 24568000 12834000 11734000 5849200 2566400 3282800 29997 2889 31541 156577;156578;156579;156580;156581;156582;156583;156584;156585;156586;156587;156588;156589;156590;156591 157479;157480;157481;157482;157483;157484;157485;157486;157487;157488;157489;157490;157491;157492;157493;157494;157495;157496;157497;157498 157486 20 SGELPPNINIKEPR ______________________________ MSGELPPNINIKEPRWDQSTFIGRANHFFT M S G P R W 0 1 2 0 0 0 2 1 0 2 1 1 0 0 3 1 0 0 0 0 0 0 14 1 1562.8417 Q9H9B4;D6RFI0;D6RDG7;S4R2X2;D6RAE9 Q9H9B4 2 15 SFXN1 Sideroflexin-1 yes no 2 0.0034539 77.379 By MS/MS 1 0.51095 0.51517 NaN 1 Median 0.51095 0.51517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18900000 12243000 6656800 18900000 12243000 6656800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29998 3998 31542 156592 157499 157499 1 SGELQGGPDDNLIEGGGTK MSAYLREQRRELYSRSGELQGGPDDNLIEG QGGPDDNLIEGGGTKFVCKPGARNITVIFH R S G T K F 0 0 1 2 0 1 2 6 0 1 2 1 0 0 1 1 1 0 0 0 0 0 19 0 1842.8595 Q96A65 Q96A65 468 486 EXOC4 Exocyst complex component 4 yes yes 2 2.5018E-14 89.013 By MS/MS By MS/MS 1 1 1.1456 1.1022 9.3849 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0791 1.1778 NaN 1 1 Median 1.2162 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12727000 4827800 7899300 0 0 0 0 0 0 10742000 4007500 6734600 1985000 820340 1164700 0 0 0 0 0 0 29999 3595 31543 156593;156594 157500;157501;157502 157500 3 SGERPVTAGEEDEQVPDSIDAR GGGLLENANPLIYQRSGERPVTAGEEDEQV AGEEDEQVPDSIDAREIFDLIRSINDPEHP R S G A R E 2 2 0 3 0 1 4 2 0 1 0 0 0 0 2 2 1 0 0 2 0 0 22 1 2356.0779 Q9Y3D0;H3BNV7 Q9Y3D0 23 44 FAM96B Mitotic spindle-associated MMXD complex subunit MIP18 yes no 3 8.5576E-13 79.347 By MS/MS By MS/MS 1 1 0.73608 0.72079 0.82315 2 Median 0.69168 0.725 NaN 1 0 Median 0.78333 0.71661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12887000 6989300 5897800 10237000 5641700 4595300 2650100 1347600 1302500 0 0 0 0 0 0 0 0 0 0 0 0 30000 4421 31544 156595;156596 157503;157504;157505;157506 157506 4 SGEVAVLKR KKFGGVQELLNQQKKSGEVAVLKRDGRYIY LNQQKKSGEVAVLKRDGRYIYYLITKKRAS K S G K R D 1 1 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 9 1 957.56073 C9JNE2;Q9Y530;C9J5P1;C9JXC3;H7C5Q1 C9JNE2 65 73 OARD1 O-acetyl-ADP-ribose deacetylase 1 yes no 2 0.017579 46.426 By MS/MS By matching 1 1 1.213 1.1196 15.172 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96002 1.0057 NaN 1 0 Median 1.5327 1.2464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1151700 527680 623990 0 0 0 0 0 0 900250 421230 479030 251410 106450 144960 0 0 0 0 0 0 30001 711 31545 156597;156598 157507 157507 1 SGEVLVNVK IAGHESGELNQYSAKSGEVLVNVKEHSRQI NQYSAKSGEVLVNVKEHSRQINDIQLSRDM K S G V K E 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 3 0 0 9 0 943.53385 Q13347 Q13347 177 185 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 1;2 0.00027872 96.253 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 1.0991 1.0227 14.551 9 Median 1.0998 1.0801 6.1711 3 1 Median 1.0991 0.91998 5.9502 3 1 Plateau 1.1715 1.1239 NaN 1 0 Median 1.1045 0.932 22.21 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80421000 37067000 43354000 22909000 10050000 12859000 46739000 22091000 24648000 5757900 2683600 3074300 5015300 2242300 2773000 0 0 0 0 0 0 30002 2806 31546 156599;156600;156601;156602;156603;156604;156605;156606;156607;156608 157508;157509;157510;157511;157512;157513;157514;157515;157516;157517;157518 157515 11 SGEVLVNVKEHSR IAGHESGELNQYSAKSGEVLVNVKEHSRQI AKSGEVLVNVKEHSRQINDIQLSRDMTMFV K S G S R Q 0 1 1 0 0 0 2 1 1 0 1 1 0 0 0 2 0 0 0 3 0 0 13 1 1452.7685 Q13347 Q13347 177 189 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 3 0.0035961 49.929 By MS/MS 1 1.4914 1.4748 NaN 1 Median 1.4914 1.4748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1417100 583260 833870 1417100 583260 833870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30003 2806 31547 156609 157519 157519 1 SGEWQETSGEIQWVSTEK TDELIKDAPTTQHDKSGEWQETSGEIQWVS WQETSGEIQWVSTEKTDGTEEKHKKEEEDE K S G E K T 0 0 0 0 0 2 4 2 0 1 0 1 0 0 0 3 2 2 0 1 0 0 18 0 2079.9385 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 1069 1086 WAPAL Wings apart-like protein homolog yes no 2 9.6695E-06 55.314 By MS/MS 1 0.80193 0.86823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80193 0.86823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3076900 1654600 1422300 0 0 0 0 0 0 3076900 1654600 1422300 0 0 0 0 0 0 0 0 0 30004 3249 31548 156610 157520;157521 157520 2 SGFEDMFAK ASFKFGTSETSKTLKSGFEDMFAKKEGQWD TSKTLKSGFEDMFAKKEGQWDCSSCLVRNE K S G A K K 1 0 0 1 0 0 1 1 0 0 0 1 1 2 0 1 0 0 0 0 0 0 9 0 1030.443 P49792 P49792 1534 1542 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.001584 79.906 By matching By MS/MS By MS/MS By matching 2 2 2 1 1.1287 1.036 9.563 7 Median NaN NaN NaN 0 0 Median 1.2988 1.1447 14.114 2 0 Median 1.0075 1.0991 9.6972 2 0 Median 1.0881 1.0019 3.184 2 0 Median 1.1287 1.1736 NaN 1 0 Median NaN NaN NaN 0 0 Median 24341000 12070000 12270000 0 0 0 810870 298970 511900 21477000 10802000 10675000 1276900 612550 664320 775410 356770 418640 0 0 0 30005 2401 31549 156611;156612;156613;156614;156615;156616;156617 157522;157523;157524;157525;157526 157523 5 SGFEGMFIR AISTPASSEISKAPKSGFEGMFIRKGQWDC ISKAPKSGFEGMFIRKGQWDCSVCCVQNES K S G I R K 0 1 0 0 0 0 1 2 0 1 0 0 1 2 0 1 0 0 0 0 0 0 9 0 1042.4906 P49792 P49792 1773 1781 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0008527 94.302 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 3 2 1 1 1.1317 1.1517 28.705 11 Median 1.1625 1.1735 0.74046 2 0 Median 1.3376 1.1587 26.839 2 0 Median 1.0471 1.1517 49.221 3 1 Median 1.2104 1.0564 12.27 2 0 Median 1.0188 1.065 NaN 1 0 Median 1.1297 0.92682 NaN 1 0 Median 69916000 30064000 39852000 4064000 2104100 1959900 1772300 790750 981590 60523000 25481000 35042000 1989800 940450 1049400 1430900 685550 745330 135360 61911 73444 30006 2401 31550;31551 156618;156619;156620;156621;156622;156623;156624;156625;156626;156627;156628 157527;157528;157529;157530;157531;157532 157531 1116 6 SGFEGMFTK ASFKFGTSETSKAPKSGFEGMFTKKEGQWD TSKAPKSGFEGMFTKKEGQWDCSVCLVRNE K S G T K K 0 0 0 0 0 0 1 2 0 0 0 1 1 2 0 1 1 0 0 0 0 0 9 0 1002.4481 P49792 P49792 1597 1605 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.00079248 97.635 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 1.2222 1.189 14.963 11 Median 1.3712 1.3278 3.9924 2 0 Median 1.3313 1.1719 12.765 2 0 Median 1.0455 1.1324 6.8932 2 0 Median 1.1257 1.0638 0.29108 2 0 Median 1.4224 1.5029 NaN 1 0 Median 1.316 1.1257 29.333 2 0 Median 95032000 44454000 50578000 5861300 2356900 3504500 8890600 3847200 5043400 71081000 33749000 37332000 6312200 3077900 3234200 2457000 1231800 1225200 429810 191080 238730 30007 2401 31552 156629;156630;156631;156632;156633;156634;156635;156636;156637;156638;156639 157533;157534;157535;157536;157537;157538 157534 6 SGFEGMFTKK ASFKFGTSETSKAPKSGFEGMFTKKEGQWD SKAPKSGFEGMFTKKEGQWDCSVCLVRNEA K S G K K E 0 0 0 0 0 0 1 2 0 0 0 2 1 2 0 1 1 0 0 0 0 0 10 1 1130.543 P49792 P49792 1597 1606 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 0.00051322 82.749 By MS/MS 2 0.99807 1.1414 1.5942 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99807 1.1414 1.5942 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26732000 12985000 13746000 0 0 0 0 0 0 26732000 12985000 13746000 0 0 0 0 0 0 0 0 0 30008 2401 31553 156640;156641 157539;157540;157541 157540 3 SGFEPASLK ADWAAKKLVWVPSDKSGFEPASLKEEVGEE WVPSDKSGFEPASLKEEVGEEAIVELVENG K S G L K E 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 0 0 9 0 934.476 P35579;Q5BKV1;B1AH99 P35579 39 47 MYH9 Myosin-9 yes no 2 0.016564 57.59 By MS/MS 1 2.7293 2.4172 NaN 1 Median NaN NaN NaN 0 0 Median 2.7293 2.4172 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17219000 4303000 12916000 0 0 0 17219000 4303000 12916000 0 0 0 0 0 0 0 0 0 0 0 0 30009 2244 31554 156642 157542 157542 1 SGFEPASLKEEVGEEAIVELVENGKK ADWAAKKLVWVPSDKSGFEPASLKEEVGEE VGEEAIVELVENGKKVKVNKDDIQKMNPPK K S G K K V 2 0 1 0 0 0 7 3 0 1 2 3 0 1 1 2 0 0 0 3 0 0 26 2 2787.4178 P35579;Q5BKV1;B1AH99 P35579 39 64 MYH9 Myosin-9 yes no 3;4 9.1252E-37 111.4 By MS/MS By MS/MS 2 2 0.93041 1.044 16.079 4 Median 1.1223 1.2288 19.068 2 0 Median 0.87273 1.0037 1.6016 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51998000 24577000 27421000 9468600 4506400 4962200 42529000 20070000 22459000 0 0 0 0 0 0 0 0 0 0 0 0 30010 2244 31555 156643;156644;156645;156646 157543;157544;157545;157546;157547;157548 157547 6 SGFGEISSPVIR ______________________________ MDRSGFGEISSPVIREAEVTRTARKQSAQK R S G I R E 0 1 0 0 0 0 1 2 0 2 0 0 0 1 1 3 0 0 0 1 0 0 12 0 1247.651 P57740;G3V1T4 P57740 4 15 NUP107 Nuclear pore complex protein Nup107 yes no 2 3.9214E-06 106.2 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 3 2 2 1.1767 1.0512 36.202 10 Median 1.198 1.1602 3.2529 2 0 Median 1.6219 1.3866 NaN 1 0 Median 0.93417 0.98552 58.895 3 0 Median 1.1308 0.92808 3.596 2 0 Median NaN NaN NaN 0 0 Median 1.205 1.1285 21.303 2 0 Median 74411000 36379000 38032000 4993700 2309100 2684600 2698700 1127400 1571200 57448000 28921000 28527000 8038900 3473600 4565200 0 0 0 1232200 548440 683740 30011 2518 31556 156647;156648;156649;156650;156651;156652;156653;156654;156655;156656 157549;157550;157551;157552;157553;157554 157550 6 SGFLVWR DGIYKVVKYWPEKGKSGFLVWRYLLRRDDD KYWPEKGKSGFLVWRYLLRRDDDEPGPWTK K S G W R Y 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 7 0 863.46537 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 584 590 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.017766 64.776 By MS/MS By matching By MS/MS By matching 1 2 4 2 0.95432 0.95177 10.835 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89194 0.95177 NaN 1 0 Median 1.0228 0.88656 0.44895 2 0 Median 0.94032 0.97803 15.155 4 0 Median 1.0442 0.90803 14.677 2 0 Median 15001000 7368600 7632000 0 0 0 0 0 0 5243800 2529800 2714000 768540 399090 369440 7800600 3848600 3952000 1187700 591160 596580 30012 20 31557 156657;156658;156659;156660;156661;156662;156663;156664;156665 157555;157556;157557;157558;157559 157555 5 SGFNFGGTGAPTGGFTFGTAK ______________________________ GTGAPTGGFTFGTAKTATTTPATGFSFSTS M S G A K T 2 0 1 0 0 0 0 7 0 0 0 1 0 4 1 1 4 0 0 0 0 0 21 0 1977.9221 P37198;M0QXN5;M0QX10;M0QYY0;M0QX13;M0QZL5;M0R1S1;M0QX64;M0R302 P37198 2 22 NUP62 Nuclear pore glycoprotein p62 yes no 2 3.1598E-11 64.104 By MS/MS By matching 1 2 0.85265 0.83027 6.6634 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85265 0.83027 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8554 0.84782 9.2676 2 0 Median NaN NaN NaN 0 0 Median 13679000 7237500 6441500 0 0 0 0 0 0 10516000 5613700 4902000 0 0 0 3163300 1623800 1539500 0 0 0 30013 2267 31558 156666;156667;156668 157560 157560 1 SGFNLEELEK TPPPYFNESIVVDMKSGFNLEELEKNNAQS VVDMKSGFNLEELEKNNAQSIRAIKGPHLA K S G E K N 0 0 1 0 0 0 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5663 Q9BVP2 Q9BVP2 425 434 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.013895 56.258 By MS/MS 1 0.6143 0.58574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6143 0.58574 NaN 1 1 Median NaN NaN NaN 0 0 Median 3782700 2012400 1770200 0 0 0 0 0 0 0 0 0 0 0 0 3782700 2012400 1770200 0 0 0 30014 3858 31559 156669 157561 157561 1 SGFNLEELEKNNAQSIR TPPPYFNESIVVDMKSGFNLEELEKNNAQS FNLEELEKNNAQSIRAIKGPHLANSILFQS K S G I R A 1 1 3 0 0 1 3 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 17 1 1947.965 Q9BVP2 Q9BVP2 425 441 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 3 0.00016195 41.912 By MS/MS 1 0.86723 0.88855 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86723 0.88855 NaN 1 0 Median NaN NaN NaN 0 0 Median 9985400 5517400 4468000 0 0 0 0 0 0 0 0 0 0 0 0 9985400 5517400 4468000 0 0 0 30015 3858 31560 156670 157562 157562 1 SGFSLDNGELR QHSSQDVHVVLKLWKSGFSLDNGELRSYQD KLWKSGFSLDNGELRSYQDPSNAQFLESIR K S G L R S 0 1 1 1 0 0 1 2 0 0 2 0 0 1 0 2 0 0 0 0 0 0 11 0 1193.5677 Q9UNZ2;F2Z2K0 Q9UNZ2 189 199 NSFL1C NSFL1 cofactor p47 yes no 2 0.0022363 54.608 By MS/MS By MS/MS 2 1 1.1887 1.0831 13.801 3 Median 1.0259 1.0004 18.409 2 0 Median 1.245 1.0831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22121000 10507000 11614000 16639000 8370800 8268200 5482000 2136000 3346000 0 0 0 0 0 0 0 0 0 0 0 0 30016 4353 31561 156671;156672;156673 157563;157564;157565;157566 157566 4 SGFSSISVSR RGFSANSARLPGVSRSGFSSISVSRSRGSG PGVSRSGFSSISVSRSRGSGGLGGACGGAG R S G S R S 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 5 0 0 0 1 0 0 10 0 1025.5142 CON__P04259;CON__P48668;P48668 CON__P48668 31 40 KRT6C Keratin, type II cytoskeletal 6C no no 2 4.7654E-05 137.14 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 1 0.2423 0.25733 110.78 5 Median 0.3475 0.33843 208.06 2 0 Median 0.16213 0.134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2423 0.25733 NaN 1 1 Median 0.35372 0.27562 NaN 1 1 Median 30213000 26886000 3326700 24210000 22085000 2125700 2056900 1786700 270240 0 0 0 0 0 0 1885800 1488600 397140 2059800 1526200 533590 + 30017 748;766 31562 156674;156675;156676;156677;156678;156679 157567;157568;157569;157570 157567 4 SGFSSVSVSR RGFSANSARLPGVSRSGFSSVSVSRSRGSG PGVSRSGFSSVSVSRSRGSGGLGGACGGAG R S G S R S 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 5 0 0 0 2 0 0 10 0 1011.4985 CON__P02538;P02538 CON__P02538 31 40 KRT6A Keratin, type II cytoskeletal 6A yes no 2 1.0549E-11 145.72 By MS/MS By MS/MS 1 2 0.20369 0.22135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.20369 0.22135 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12167000 11790000 376740 5859300 5859300 0 0 0 0 6307400 5930600 376740 0 0 0 0 0 0 0 0 0 + 30018 741 31563 156680;156681;156682 157571;157572;157573 157571 3 SGGASHSELIHNLR VVLYLLRVCLAMAWKSGGASHSELIHNLRK KSGGASHSELIHNLRKNGIIKTDKVFEVML K S G L R K 1 1 1 0 0 0 1 2 2 1 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1476.7433 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8;F8WDT3;F8WAV5;F8WAX2;H7C4X2 A0A0A0MRJ6 63 76 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2;3 1.5312E-11 172.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 5 1 1 1 1 1.1056 0.92591 18.185 10 Median 0.97131 0.92236 NaN 1 0 Median 0.9794 0.83163 14.686 5 2 Median 1.1125 1.0689 NaN 1 0 Median 1.1135 0.92179 NaN 1 0 Median 1.3194 1.3008 NaN 1 0 Median 1.2758 1.0355 NaN 1 0 Median 57863000 27819000 30045000 17658000 8664600 8993500 22622000 10835000 11787000 10980000 5464000 5516300 2056900 879840 1177100 2650100 1145700 1504400 1896000 829670 1066300 30019 163 31564 156683;156684;156685;156686;156687;156688;156689;156690;156691;156692 157574;157575;157576;157577;157578;157579;157580;157581;157582;157583;157584 157578 11 SGGASHSELIHNLRK VVLYLLRVCLAMAWKSGGASHSELIHNLRK SGGASHSELIHNLRKNGIIKTDKVFEVMLA K S G R K N 1 1 1 0 0 0 1 2 2 1 2 1 0 0 0 3 0 0 0 0 0 0 15 1 1604.8383 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;F8WDT3;F8WAV5;F8WAX2 A0A0A0MRJ6 63 77 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 3;4 3.4832E-05 77.776 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 2 2 1.2432 1.1749 12.836 12 Median 1.0449 1.0939 10.338 2 0 Median 1.2469 1.1354 2.6119 4 0 Median 1.173 1.2145 1.7034 2 0 Median 1.2854 1.1379 4.2885 2 0 Median 1.4732 1.5516 1.7481 2 0 Median NaN NaN NaN 0 0 Median 48750000 22035000 26715000 15097000 7352800 7744200 17734000 7877400 9857100 9010500 4013400 4997100 3817100 1545600 2271500 3091200 1246100 1845100 0 0 0 30020 163 31565 156693;156694;156695;156696;156697;156698;156699;156700;156701;156702;156703;156704 157585;157586;157587;157588;157589;157590;157591;157592;157593;157594;157595;157596;157597;157598;157599;157600 157596 16 SGGELDIVVTSNK SMITTLDPGMAPYIKSGGELDIVVTSNKEV IKSGGELDIVVTSNKEVKVAAVRDAFQEVF K S G N K E 0 0 1 1 0 0 1 2 0 1 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1317.6776 Q96M27 Q96M27 254 266 PRRC1 Protein PRRC1 yes yes 2 0.0081403 55.401 By MS/MS 1 1.1018 1.0278 NaN 1 Median 1.1018 1.0278 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8920200 3853700 5066500 8920200 3853700 5066500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30021 3703 31566 156705 157601 157601 1 SGGFQSMGLSYPVFK DTREMVRAQNKKKKKSGGFQSMGLSYPVFK SGGFQSMGLSYPVFKGIMKKGYKVPTPIQR K S G F K G 0 0 0 0 0 1 0 3 0 0 1 1 1 2 1 3 0 0 1 1 0 0 15 0 1603.7705 Q8TDD1;F8VRX4 Q8TDD1 95 109 DDX54 ATP-dependent RNA helicase DDX54 yes no 2 0.056055 22.533 By MS/MS By matching By matching 1 1 1 1.3048 1.3436 39.869 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81377 0.88115 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3048 1.3436 NaN 1 0 Median 2.262 1.955 NaN 1 0 Median 4585100 2442000 2143100 0 0 0 0 0 0 2581800 1455800 1126000 0 0 0 1858600 937710 920930 144660 48447 96216 30022 3470 31567 156706;156707;156708 157602 157602 1 SGGGFGPDPGSGTTVPAR RERLRWPPPPKPRLKSGGGFGPDPGSGTTV GFGPDPGSGTTVPARRLPVPRPSFDASASE K S G A R R 1 1 0 1 0 0 0 6 0 0 0 0 0 1 3 2 2 0 0 1 0 0 18 0 1615.759 Q9H4L4 Q9H4L4 44 61 SENP3 Sentrin-specific protease 3 yes yes 2 9.9592E-09 80.469 By MS/MS 1 1.7232 1.7492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7232 1.7492 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15381000 5581600 9799800 0 0 0 0 0 0 15381000 5581600 9799800 0 0 0 0 0 0 0 0 0 30023 3966 31568 156709 157603 157603 1 SGGGFSSGSAGIINYQR ______________________________ GGFSSGSAGIINYQRRTTSSSTRRSGGGGG R S G Q R R 1 1 1 0 0 1 0 5 0 2 0 0 0 1 0 4 0 0 1 0 0 0 17 0 1656.7856 P04264;CON__P04264 P04264 13 29 KRT1 Keratin, type II cytoskeletal 1 yes no 2 4.4066E-98 215.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 4 3 8 7 2 0.076043 0.069518 90.551 24 Median 0.068249 0.06507 67.065 6 6 Median 0.088457 0.075189 175.31 3 3 Median 0.085158 0.092812 19.303 3 3 Median 0.085182 0.073983 95.773 7 7 Median 0.062092 0.062385 77.89 4 4 Median 0.025215 0.020939 NaN 1 1 Median 507760000 479760000 27994000 151110000 144140000 6970200 38259000 34812000 3446300 112830000 104670000 8152800 40394000 37822000 2571800 120580000 113810000 6761400 44597000 44505000 91449 + 30024 1848 31569 156710;156711;156712;156713;156714;156715;156716;156717;156718;156719;156720;156721;156722;156723;156724;156725;156726;156727;156728;156729;156730;156731;156732;156733;156734;156735;156736;156737;156738;156739;156740;156741 157604;157605;157606;157607;157608;157609;157610;157611;157612;157613;157614;157615;157616;157617;157618;157619;157620;157621;157622;157623;157624;157625;157626;157627;157628;157629;157630;157631;157632;157633;157634;157635;157636;157637;157638 157628 35 SGGGGDIHQGFQSLLTEVNK GNTAAQMAQILSFNKSGGGGDIHQGFQSLL DIHQGFQSLLTEVNKTGTQYLLRMANRLFG K S G N K T 0 0 1 1 0 2 1 5 1 1 2 1 0 1 0 2 1 0 0 1 0 0 20 0 2043.0021 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 66 85 SERPINB6 Serpin B6 yes no 2;3 3.4842E-06 48.112 By MS/MS By matching By MS/MS 2 5 1 1.1053 0.956 11.804 8 Median 0.97323 0.90347 7.337 2 0 Median 1.155 0.99417 13.265 5 0 Median 0.9215 0.96044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68124000 33752000 34372000 44235000 22016000 22218000 16169000 7429900 8739600 7719700 4305300 3414500 0 0 0 0 0 0 0 0 0 30025 1 31570 156742;156743;156744;156745;156746;156747;156748;156749 157639;157640;157641;157642;157643;157644 157639 6 SGGGGGGGGCGGGGGVSSLR MSVRYSSSKHYSSSRSGGGGGGGGCGGGGG GGGGCGGGGGVSSLRISSSKGSLGGGFSSG R S G L R I 0 1 0 0 1 0 0 13 0 0 1 0 0 0 0 3 0 0 0 1 0 0 20 0 1548.6699 P13645;CON__P13645 P13645 16 35 KRT10 Keratin, type I cytoskeletal 10 yes no 2 1.3666E-10 76.262 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 920050 920050 0 0 0 0 541570 541570 0 0 0 0 0 0 0 0 0 0 378480 378480 0 + 30026 756 31571 156750;156751 157645;157646;157647 157647 3 SGGGGGGGLGSGGSIR ______________________________ GGGGGGGLGSGGSIRSSYSRFSSSGGGGGG R S G I R S 0 1 0 0 0 0 0 10 0 1 1 0 0 0 0 3 0 0 0 0 0 0 16 0 1231.5905 P35527;CON__P35527 P35527 14 29 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.2429E-19 131.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 12 6 10 4 3 0.13896 0.12719 73.544 43 Median 0.11513 0.10956 89.161 9 9 Median 0.10485 0.088684 73.799 11 10 Median 0.18677 0.19957 63.934 6 6 Median 0.19116 0.15725 63.714 10 10 Median 0.14162 0.14325 45.39 4 4 Median 0.11036 0.091491 72.702 3 3 Median 221120000 197710000 23408000 44970000 39283000 5687000 89255000 78001000 11254000 17826000 15672000 2154000 26324000 24277000 2046600 25369000 23491000 1877900 17380000 16991000 388690 + 30027 2242 31572 156752;156753;156754;156755;156756;156757;156758;156759;156760;156761;156762;156763;156764;156765;156766;156767;156768;156769;156770;156771;156772;156773;156774;156775;156776;156777;156778;156779;156780;156781;156782;156783;156784;156785;156786;156787;156788;156789;156790;156791;156792;156793;156794;156795;156796 157648;157649;157650;157651;157652;157653;157654;157655;157656;157657;157658;157659;157660;157661;157662;157663;157664;157665;157666;157667;157668;157669;157670;157671;157672;157673;157674;157675;157676;157677;157678;157679;157680;157681;157682;157683;157684;157685;157686;157687;157688;157689;157690;157691;157692;157693;157694 157688 47 SGGGGGRFSSCGGGGGSFGAGGGFGSR IINYQRRTTSSSTRRSGGGGGRFSSCGGGG GGGGSFGAGGGFGSRSLVNLGGSKSISISV R S G S R S 1 2 0 0 1 0 0 15 0 0 0 0 0 3 0 5 0 0 0 0 0 0 27 1 2292.9679 P04264;CON__P04264 P04264 39 65 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.0013521 32.985 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1533700 1533700 0 0 0 0 1533700 1533700 0 0 0 0 0 0 0 0 0 0 0 0 0 + 30028 1848 31573 156797 157695 157695 1 SGGGGLMEEMNAMLAR EASGGPTAPKAESGRSGGGGLMEEMNAMLA GGGGLMEEMNAMLARRRKATQVGEKTPKDE R S G A R R 2 1 1 0 0 0 2 4 0 0 2 0 3 0 0 1 0 0 0 0 0 0 16 0 1622.7215 P50552;K7EM16 P50552 258 273 VASP Vasodilator-stimulated phosphoprotein yes no 2 0.00068154 43.628 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.167 1.0005 12.083 5 Median 1.2754 1.2627 NaN 1 0 Median 1.167 1.0005 NaN 1 0 Median 1.2187 1.2279 NaN 1 0 Median 1.1369 0.99922 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1291 0.99847 NaN 1 0 Median 6217300 2755500 3461800 1320600 591560 729030 2677800 1154600 1523100 2093800 947340 1146400 70518 31881 38637 0 0 0 54620 30094 24526 30029 2416 31574 156798;156799;156800;156801;156802 157696 157696 1 SGGGIVEPIPLNIK LLQKMGYKSGQALGKSGGGIVEPIPLNIKT KSGGGIVEPIPLNIKTGKSGIGHEASLKRK K S G I K T 0 0 1 0 0 0 1 3 0 3 1 1 0 0 2 1 0 0 0 1 0 0 14 0 1392.7977 Q8N954 Q8N954 117 130 GPATCH11 G patch domain-containing protein 11 yes yes 2 0.015302 30.569 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.70381 0.64184 8.5894 4 Median 0.63357 0.61675 NaN 1 0 Median 0.80879 0.68663 NaN 1 0 Median 0.59326 0.56743 NaN 1 0 Median 0.78183 0.66795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7198900 4160300 3038600 2816500 1688900 1127600 560310 348520 211790 3423100 1906700 1516400 398990 216190 182800 0 0 0 0 0 0 30030 3396 31575 156803;156804;156805;156806 157697;157698;157699 157699 3 SGGGYIVVDPILR QSGSFQYYFLQGNEKSGGGYIVVDPILRVG EKSGGGYIVVDPILRVGADNHVLPLDCVTL K S G L R V 0 1 0 1 0 0 0 3 0 2 1 0 0 0 1 1 0 0 1 2 0 0 13 0 1344.7402 P35573 P35573 102 114 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 9.0117E-05 85.355 By MS/MS 2 0.5664 0.55069 56.478 2 Median 0.5664 0.55069 56.478 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7260100 4234700 3025400 7260100 4234700 3025400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30031 2243 31576 156807;156808 157700;157701 157700 2 SGGIETIANEYSDR GIDLGFLNCYIAVARSGGIETIANEYSDRC RSGGIETIANEYSDRCTPACISLGSRTRAI R S G D R C 1 1 1 1 0 0 2 2 0 2 0 0 0 0 0 2 1 0 1 0 0 0 14 0 1510.69 O95757;D6RJ96 O95757 20 33 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.040486 38.634 By MS/MS 1 0.93972 1.0075 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93972 1.0075 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3687200 2000400 1686800 0 0 0 0 0 0 3687200 2000400 1686800 0 0 0 0 0 0 0 0 0 30032 1790 31577 156809 157702 157702 1 SGGIVISPFR SGGGGGGGGGGGGGKSGGIVISPFRLEELT GGGGKSGGIVISPFRLEELTNRLASLQQEN K S G F R L 0 1 0 0 0 0 0 2 0 2 0 0 0 1 1 2 0 0 0 1 0 0 10 0 1031.5764 Q16204 Q16204 46 55 CCDC6 Coiled-coil domain-containing protein 6 yes yes 2 0.0010001 69.423 By MS/MS 1 0.9273 0.9286 NaN 1 Median 0.9273 0.9286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2543200 1266800 1276400 2543200 1266800 1276400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30033 2980 31578 156810 157703 157703 1 SGGLGGSHALLLLR IPKKLLQKVFNDTCRSGGLGGSHALLLLRS RSGGLGGSHALLLLRSCGSLLPELKLEERT R S G L R S 1 1 0 0 0 0 0 4 1 0 5 0 0 0 0 2 0 0 0 0 0 0 14 0 1349.7779 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 115 128 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2;3 1.2687E-07 114.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 2 1 2 1.4942 1.2515 29.142 13 Median 1.1106 1.0678 33.441 3 0 Median 1.6273 1.4168 16.804 4 0 Median 1.2619 1.3882 NaN 1 0 Median 1.6098 1.3718 17.532 2 0 Median 1.7796 1.8605 NaN 1 0 Median 1.6876 1.4108 29.42 2 0 Median 99454000 43413000 56041000 58965000 27038000 31926000 31036000 12123000 18913000 4510800 2361000 2149800 2840200 1167300 1672900 1539100 539390 999740 563000 184610 378380 30034 2315 31579 156811;156812;156813;156814;156815;156816;156817;156818;156819;156820;156821;156822;156823 157704;157705;157706;157707;157708;157709;157710;157711;157712;157713;157714 157706 11 SGGLPLVLSMLTR PLADDSSDFQFHFLKSGGLPLVLSMLTRNN LKSGGLPLVLSMLTRNNFLPNADMETRRGA K S G T R N 0 1 0 0 0 0 0 2 0 0 4 0 1 0 1 2 1 0 0 1 0 0 13 0 1342.7643 Q93008 Q93008 1120 1132 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.00034197 76.332 By MS/MS By matching By MS/MS 2 1 1 0.95584 0.89513 16.117 4 Median 0.92191 0.89513 2.5786 2 0 Median 0.97799 0.82056 NaN 1 0 Median 1.068 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21501000 10885000 10616000 13670000 7027200 6642400 5642900 2802000 2841000 2188500 1056400 1132100 0 0 0 0 0 0 0 0 0 30035 3573 31580 156824;156825;156826;156827 157715;157716;157717;157718;157719;157720;157721 157719 7 SGGMERPFVLAR GLYVHMATADGLRQRSGGMERPFVLARAFF RQRSGGMERPFVLARAFFAGSQRFGAVWTG R S G A R A 1 2 0 0 0 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 12 1 1318.6816 E9PKU7;Q14697;F5H6X6 Q14697 591 602 GANAB Neutral alpha-glucosidase AB no no 2;3 1.7906E-06 146.16 By MS/MS By MS/MS By MS/MS By MS/MS 8 6 1 2 0.89005 0.97871 39.414 17 Median 0.86585 0.90684 23.876 8 0 Median 1.1467 1.1157 7.7574 6 0 Median 0.76549 0.88451 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39565 0.42894 83.414 2 1 Median NaN NaN NaN 0 0 Median 275830000 142730000 133100000 199590000 104820000 94776000 61784000 28646000 33138000 4525200 2260800 2264400 0 0 0 9925600 7001300 2924300 0 0 0 30036 2896;951 31581;31582 156828;156829;156830;156831;156832;156833;156834;156835;156836;156837;156838;156839;156840;156841;156842;156843;156844 157722;157723;157724;157725;157726;157727;157728;157729;157730;157731;157732;157733;157734;157735;157736;157737;157738;157739 157730 335 18 SGGMSNELNNIISR ASKLYRPGSVAYVSRSGGMSNELNNIISRT RSGGMSNELNNIISRTTDGVYEGVAIGGDR R S G S R T 0 1 3 0 0 0 1 2 0 2 1 0 1 0 0 3 0 0 0 0 0 0 14 0 1490.7147 P53396 P53396 663 676 ACLY ATP-citrate synthase yes yes 2 5.4999E-11 172.8 By MS/MS By MS/MS 2 1 1.2563 1.0828 15.779 3 Median 1.278 1.2297 17.992 2 1 Median 1.2563 1.0461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73341000 32137000 41204000 57115000 25068000 32047000 16226000 7069400 9157000 0 0 0 0 0 0 0 0 0 0 0 0 30037 2467 31583;31584 156845;156846;156847 157740;157741;157742;157743 157741 1158 4 SGGNEVSIEER KPAPPQTEQVESKRKSGGNEVSIEERLGAM SKRKSGGNEVSIEERLGAMDIDTHKKGKED K S G E R L 0 1 1 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0 11 0 1175.5418 Q15061 Q15061 431 441 WDR43 WD repeat-containing protein 43 yes yes 2 0.00012378 120.09 By matching By MS/MS By MS/MS 1 2 2 1.0071 1.0132 10.138 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82176 0.86681 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99128 1.0216 1.1607 2 0 Median 1.1788 0.98671 15.001 2 0 Median 10463000 5705100 4757900 0 0 0 0 0 0 1535000 876940 658050 0 0 0 5763700 3289000 2474600 3164400 1539200 1625200 30038 2924 31585 156848;156849;156850;156851;156852 157744;157745;157746;157747 157744 4 SGGNLEVMGLMLGK KISALALLKMVMHARSGGNLEVMGLMLGKV RSGGNLEVMGLMLGKVDGETMIIMDSFALP R S G G K V 0 0 1 0 0 0 1 4 0 0 3 1 2 0 0 1 0 0 0 1 0 0 14 0 1404.7105 Q92905;E5RHF2;E5RHH5 Q92905 71 84 COPS5 COP9 signalosome complex subunit 5 yes no 2 0.00011607 81.865 By MS/MS By MS/MS 1 1 1.1882 1.1318 6.4039 2 Median 1.1519 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2255 1.1842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8345600 3956200 4389400 6701400 3250700 3450700 0 0 0 1644300 705530 938740 0 0 0 0 0 0 0 0 0 30039 3565 31586 156853;156854 157748;157749 157748 2 SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK YNYESKFNYSGSGGRSGGNSYGSGGASYNP GYGGGSGGGSSYQGKQGGYSQSNYNSPGSG R S G G K Q 1 0 2 0 0 1 0 15 1 0 0 1 0 0 1 8 0 0 4 0 0 0 34 0 3011.2302 Q12906;K7ELV3 Q12906 816 849 ILF3 Interleukin enhancer-binding factor 3 yes no 3 1.4988E-22 71.098 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 5 4 0.9521 0.8928 24.296 15 Median 1.602 1.6097 NaN 1 0 Median 0.83308 0.71758 NaN 1 1 Median 1.106 1.1879 21.127 2 0 Median 1.0729 0.93235 16.634 2 0 Median 0.8289 0.83931 20.162 5 0 Median 1.0346 0.84856 8.9203 4 0 Median 114720000 57284000 57440000 1641100 660020 981110 3849100 1738500 2110600 17994000 8657200 9336500 9938200 4772300 5165900 59828000 30926000 28903000 21473000 10530000 10943000 30040 2769 31587 156855;156856;156857;156858;156859;156860;156861;156862;156863;156864;156865;156866;156867;156868;156869 157750;157751;157752;157753;157754;157755;157756;157757;157758;157759;157760;157761;157762;157763;157764;157765;157766 157765 17 SGGPVVVLVQLER NIELSYEVVDKDSIRSGGPVVVLVQLEREE IRSGGPVVVLVQLEREEEVTGPVIAPLFPQ R S G E R E 0 1 0 0 0 1 1 2 0 0 2 0 0 0 1 1 0 0 0 4 0 0 13 0 1351.7823 O75643 O75643 2031 2043 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.015667 33.225 By matching By MS/MS By MS/MS By matching 2 1 1 1 1.0777 1.0047 15.675 5 Median 1.1548 1.1869 15.44 2 0 Median 1.0777 0.92044 NaN 1 0 Median 0.80258 0.89114 NaN 1 0 Median 1.1477 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10586000 4801300 5785100 1871900 684950 1187000 6299100 2868100 3431000 2160400 1126700 1033700 254940 121570 133370 0 0 0 0 0 0 30041 1688 31588 156870;156871;156872;156873;156874 157767;157768 157768 2 SGGSGHAVAEPASPEQELDQNK QGETQLLVSRKSRPKSGGSGHAVAEPASPE VAEPASPEQELDQNKGKGRDVESVQTPSKA K S G N K G 3 0 1 1 0 2 3 3 1 0 1 1 0 0 2 3 0 0 0 1 0 0 22 0 2207.0091 P46013 P46013 296 317 MKI67 Antigen KI-67 yes yes 3 0.027267 13.188 By MS/MS 1 0.75142 0.64483 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75142 0.64483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3335500 1712200 1623400 0 0 0 0 0 0 0 0 0 3335500 1712200 1623400 0 0 0 0 0 0 30042 2335 31589 156875 157769 157769 1 SGGTALHVAAAK QWLNSGHINDVRHAKSGGTALHVAAAKGYT HAKSGGTALHVAAAKGYTEVLKLLIQAGYD K S G A K G 4 0 0 0 0 0 0 2 1 0 1 1 0 0 0 1 1 0 0 1 0 0 12 0 1081.588 O14974;F8VZN8;F8VW28;H0YHL8 O14974 198 209 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 0.0011531 56.432 By matching By MS/MS By matching By matching 1 1 1 1 1.1049 0.99769 9.5538 4 Median 1.1379 1.1575 NaN 1 0 Median 1.1333 0.97364 NaN 1 0 Median 0.95146 1.0223 NaN 1 0 Median 1.0772 0.92638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1639100 793420 845720 115290 58728 56559 838050 389060 448990 425730 221880 203860 260060 123750 136310 0 0 0 0 0 0 30043 1508 31590 156876;156877;156878;156879 157770;157771 157771 2 SGGTEGLLAEK GDQSAINELMQMRLRSGGTEGLLAEKLEAL MRLRSGGTEGLLAEKLEALITQTRAKQAAT R S G E K L 1 0 0 0 0 0 2 3 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1060.5401 Q9UHB9 Q9UHB9 267 277 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.00015099 115.78 By MS/MS By MS/MS 1 1 1.3099 1.2424 42.605 2 Median NaN NaN NaN 0 0 Median 1.086 0.91925 NaN 1 0 Median 1.5799 1.6792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7609900 3422600 4187300 0 0 0 5684500 2793800 2890700 1925300 628790 1296500 0 0 0 0 0 0 0 0 0 30044 4274 31591 156880;156881 157772;157773 157773 2 SGGTEGLLAEKLEALITQTR GDQSAINELMQMRLRSGGTEGLLAEKLEAL GLLAEKLEALITQTRAKQAATMSEVEWRGR R S G T R A 2 1 0 0 0 1 3 3 0 1 4 1 0 0 0 1 3 0 0 0 0 0 20 1 2086.127 Q9UHB9 Q9UHB9 267 286 SRP68 Signal recognition particle subunit SRP68 yes yes 3 0.00053393 29.636 By MS/MS By MS/MS 2 2 1.1629 1.1123 5.8849 4 Median 1.1544 1.1679 2.5222 2 0 Median 1.1657 1.061 2.3059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7430400 3407800 4022600 4212100 1978200 2233900 3218300 1429600 1788700 0 0 0 0 0 0 0 0 0 0 0 0 30045 4274 31592 156882;156883;156884;156885 157774;157775;157776;157777;157778 157775 5 SGGTTGIEAFAFGSGLR KLKEPGLLSLVDWAKSGGTTGIEAFAFGSG GTTGIEAFAFGSGLRGALRLPSFKVKRKEP K S G L R G 2 1 0 0 0 0 1 5 0 1 1 0 0 2 0 2 2 0 0 0 0 0 17 0 1626.8002 O15047 O15047 869 885 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 2 2.279E-05 70.412 By matching By MS/MS 1 1 0.87758 0.86906 0.8338 2 Median NaN NaN NaN 0 0 Median 0.9736 0.86395 NaN 1 0 Median 0.79103 0.8742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4488700 2444700 2044100 0 0 0 319270 156860 162410 4169500 2287800 1881700 0 0 0 0 0 0 0 0 0 30046 1516 31593 156886;156887 157779;157780 157780 2 SGGVGGSNTNWK AEGQALDGVSISDLKSGGVGGSNTNWKTLY DLKSGGVGGSNTNWKTLYEVKSENLGQGDK K S G W K T 0 0 2 0 0 0 0 4 0 0 0 1 0 0 0 2 1 1 0 1 0 0 12 0 1162.5367 P27694;I3L4R8 P27694 432 443 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2 0.00063919 62.823 By MS/MS By MS/MS 1 1 1.0328 0.93914 6.279 2 Median 0.92739 0.89835 NaN 1 0 Median 1.1501 0.98177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5260700 2443500 2817200 1147400 563630 583780 4113300 1879800 2233500 0 0 0 0 0 0 0 0 0 0 0 0 30047 2156 31594 156888;156889 157781;157782;157783 157783 3 SGGVNQYVVQEVLSIK MYEFHLPLSPEELLKSGGVNQYVVQEVLSI GGVNQYVVQEVLSIKHLPPQLRAFQAAFRA K S G I K H 0 0 1 0 0 2 1 2 0 1 1 1 0 0 0 2 0 0 1 4 0 0 16 0 1718.9203 Q15021;E7EN77;F5GZK7;F5H431 Q15021 20 35 NCAPD2 Condensin complex subunit 1 yes no 2 0.00013111 51.218 By MS/MS 1 1.0932 1.0524 NaN 1 Median 1.0932 1.0524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6475500 3148000 3327600 6475500 3148000 3327600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30048 2915 31595 156890 157784;157785 157785 2 SGHELGMTPLQELSLR FERLVNDLSKIAQGRSGHELGMTPLQELSL GHELGMTPLQELSLRKKGLECLVSILKCMV R S G L R K 0 1 0 0 0 1 2 2 1 0 4 0 1 0 1 2 1 0 0 0 0 0 16 0 1766.8985 Q9Y6D5 Q9Y6D5 545 560 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 yes yes 3 0.00082341 36.193 By MS/MS 1 0.71463 0.71431 NaN 1 Median 0.71463 0.71431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2160100 1359700 800350 2160100 1359700 800350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30049 4489 31596 156891 157786 157786 1 SGHFEQAIK LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI DEMSGRSGHFEQAIKEGEDMIAEEHFGSEK R S G I K E 1 0 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 9 0 1015.5087 Q01082;A0A087WUZ3 Q01082 691 699 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.017009 42.109 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.2113 1.0692 26.972 6 Median 1.6513 1.6121 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93366 1.0386 NaN 1 0 Median 1.1944 1.0851 NaN 1 0 Median 1.5099 1.5797 NaN 1 0 Median 1.069 0.92054 19.09 2 0 Median 5148900 2330100 2818900 174000 63972 110030 0 0 0 2018900 969470 1049500 708180 308530 399660 1074600 418870 655730 1173200 569250 603960 30050 2681 31597 156892;156893;156894;156895;156896;156897 157787;157788 157787 2 SGHFEQAIKEGEDMIAEEHFGSEK LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI EGEDMIAEEHFGSEKIRERIIYIREQWANL R S G E K I 2 0 0 1 0 1 6 3 2 2 0 2 1 2 0 2 0 0 0 0 0 0 24 1 2704.2075 Q01082;A0A087WUZ3 Q01082 691 714 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 4 0.0024429 25.221 By MS/MS By MS/MS 1 1 0.94243 1.0168 19.283 2 Median 1.1508 1.1654 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77177 0.88723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5162700 2437400 2725300 2375100 979210 1395900 0 0 0 2787600 1458200 1329400 0 0 0 0 0 0 0 0 0 30051 2681 31598 156898;156899 157789;157790 157790 2 SGHIQTLLR DILESINSIKSRLSKSGHIQTLLRAFEARD KSRLSKSGHIQTLLRAFEARDRNIQESNFD K S G L R A 0 1 0 0 0 1 0 1 1 1 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1023.5825 Q9Y3A6 Q9Y3A6 170 178 TMED5 Transmembrane emp24 domain-containing protein 5 yes yes 2 0.041502 51.854 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30052 4413 31599 156900 157791 157791 1 SGHSSVEDAQATMELYK HLTKKLLNRDIQVGKSGHSSVEDAQATMEL HSSVEDAQATMELYKLVEVEWEEHLARNPP K S G Y K L 2 0 0 1 0 1 2 1 1 0 1 1 1 0 0 3 1 0 1 1 0 0 17 0 1851.8309 Q9H9L3 Q9H9L3 320 336 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 3 8.2304E-05 45.723 By MS/MS 1 1.0107 1.0737 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0107 1.0737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4606000 2137800 2468300 0 0 0 0 0 0 4606000 2137800 2468300 0 0 0 0 0 0 0 0 0 30053 4001 31600 156901 157792;157793 157793 2 SGIDITDFQAK IPSIVSSPLNSPLDRSGIDITDFQAKREKV PLDRSGIDITDFQAKREKVDSQYPPVQRLM R S G A K R 1 0 0 2 0 1 0 1 0 2 0 1 0 1 0 1 1 0 0 0 0 0 11 0 1193.5928 P49790 P49790 343 353 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.015002 56.013 By MS/MS 1 0.8194 0.90379 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8194 0.90379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13646000 7804100 5842200 0 0 0 0 0 0 13646000 7804100 5842200 0 0 0 0 0 0 0 0 0 30054 2400 31601 156902 157794 157794 1 SGILPILVK LLSSDRNPPIDDLIKSGILPILVKCLERDD IDDLIKSGILPILVKCLERDDNPSLQFEAA K S G V K C 0 0 0 0 0 0 0 1 0 2 2 1 0 0 1 1 0 0 0 1 0 0 9 0 938.61645 O00505 O00505 113 121 KPNA3 Importin subunit alpha-4 yes yes 2 0.00839 50.127 By matching By MS/MS By matching By matching By matching 1 2 1 2 2 1.1554 1.0927 16.981 7 Median 1.1296 1.0937 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0927 1.0403 0.84247 2 0 Median 1.1554 1.006 NaN 1 0 Median 1.4818 1.4725 8.9887 2 0 Median 1.3056 1.0927 NaN 1 0 Median 18213000 8368400 9844300 1320400 691300 629110 0 0 0 12694000 6030400 6663900 621760 274250 347510 2803200 988580 1814600 773000 383870 389120 30055 1469 31602 156903;156904;156905;156906;156907;156908;156909;156910 157795;157796 157796 2 SGKAPILIATDVASR DKSQPERDWVLNEFRSGKAPILIATDVASR SGKAPILIATDVASRGLDVEDVKFVINYDY R S G S R G 3 1 0 1 0 0 0 1 0 2 1 1 0 0 1 2 1 0 0 1 0 0 15 1 1497.8515 A0A1X7SBZ2;A0A1W2PQ51;Q92841;A0A0U1RQJ0 A0A1X7SBZ2 466 480 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 1.4415E-08 99.531 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 0.95421 0.98855 10.07 7 Median 0.9646 0.98855 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7809 0.82885 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87112 0.95836 10.625 3 0 Median 1.1779 1.0482 0.67767 2 0 Median 49583000 25467000 24116000 3156300 1278600 1877700 0 0 0 6155600 3215900 2939700 0 0 0 36389000 19195000 17194000 3882900 1777900 2105000 30056 343 31603 156911;156912;156913;156914;156915;156916;156917;156918 157797;157798;157799;157800;157801;157802;157803;157804;157805 157802 8 SGKDGVMEMNSIEPAKETTTNV DITRAFEGQAHGADRSGKDGVMEMNSIEPA EMNSIEPAKETTTNV_______________ R S G N V - 1 0 2 1 0 0 3 2 0 1 0 2 2 0 1 2 3 0 0 2 0 0 22 2 2337.0828 P11169 P11169 475 496 SLC2A3 Solute carrier family 2, facilitated glucose transporter member 3 yes yes 3 5.8636E-09 50.776 By MS/MS By MS/MS 1 1 1.1099 1.1306 59.499 2 Median 1.5818 1.722 NaN 1 0 Median 0.77881 0.74231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32420000 13419000 19001000 26364000 9928800 16435000 6056600 3490500 2566100 0 0 0 0 0 0 0 0 0 0 0 0 30057 1952 31604 156919;156920 157806;157807 157806 2 SGKGPILMELQTYR LCVREATRFAAAYCRSGKGPILMELQTYRY RSGKGPILMELQTYRYHGHSMSDPGVSYRT R S G Y R Y 0 1 0 0 0 1 1 2 0 1 2 1 1 0 1 1 1 0 1 0 0 0 14 1 1591.8392 P08559;P29803 P08559 275 288 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial yes no 3 0.00054038 47.201 By MS/MS 1 0.98641 1.0568 NaN 1 Median 0.98641 1.0568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7028900 3510800 3518100 7028900 3510800 3518100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30058 1902 31605 156921 157808;157809 157809 2 SGKPAELLK PGITVTHLAVNRVPRSGKPAELLKMFGIDR VNRVPRSGKPAELLKMFGIDRDAIAQAVRG R S G L K M 1 0 0 0 0 0 1 1 0 0 2 2 0 0 1 1 0 0 0 0 0 0 9 1 941.55458 P29401;A0A0B4J1R6 P29401 595 603 TKT Transketolase yes no 2 0.010689 73.233 By matching By MS/MS By matching 1 2 1 0.94839 0.84388 13.664 4 Linear 0.85209 0.80072 NaN 1 0 Median 0.83392 0.78131 18.321 2 0 Median 0.82483 0.93503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48796000 24568000 24228000 9722700 4805800 4916900 36242000 18296000 17947000 2830800 1466700 1364100 0 0 0 0 0 0 0 0 0 30059 2173 31606 156922;156923;156924;156925 157810;157811 157810 2 SGKTELAEPIAIRPTSETVMYPAYAK THVADFAPEVAWVTRSGKTELAEPIAIRPT IRPTSETVMYPAYAKWVQSHRDLPIKLNQW R S G A K W 4 1 0 0 0 0 3 1 0 2 1 2 1 0 3 2 3 0 2 1 0 0 26 2 2822.4524 P07814 P07814 1107 1132 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3;4 8.6528E-26 83.602 By MS/MS 2 0.72855 0.77013 17.556 2 Median 0.72855 0.77013 17.556 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45835000 25904000 19931000 45835000 25904000 19931000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30060 1892 31607 156926;156927 157812;157813;157814;157815 157815 4 SGKWEGLVYAPPGK MSKVIGANKNQEEEKSGKWEGLVYAPPGKE KSGKWEGLVYAPPGKEKQRKTEELEEESFP K S G G K E 1 0 0 0 0 0 1 3 0 0 1 2 0 0 2 1 0 1 1 1 0 0 14 1 1487.7773 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 468 481 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 0.0041004 32.275 By matching By matching By matching By MS/MS By matching 1 1 1 2 1 0.78601 0.88989 35.751 6 Median 0.60674 0.64068 NaN 1 0 Median 1.8889 1.7816 NaN 1 0 Median 0.76532 0.87591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76648 0.83976 10.439 2 0 Median 1.2906 1.1681 NaN 1 0 Median 20692000 10857000 9834900 2753600 1726300 1027300 722870 232250 490610 3433200 1593400 1839800 0 0 0 12890000 6953000 5937300 891880 351990 539900 30061 439 31608 156928;156929;156930;156931;156932;156933 157816;157817;157818 157816 3 SGKWEGLVYAPPGKEK MSKVIGANKNQEEEKSGKWEGLVYAPPGKE GKWEGLVYAPPGKEKQRKTEELEEESFPER K S G E K Q 1 0 0 0 0 0 2 3 0 0 1 3 0 0 2 1 0 1 1 1 0 0 16 2 1744.9148 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 468 483 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 0.063376 23.799 By MS/MS By matching 1 1 0.68862 0.79704 6.5229 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63339 0.76111 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74867 0.83466 NaN 1 0 Median NaN NaN NaN 0 0 Median 11490000 5996800 5493500 0 0 0 0 0 0 3132400 1838100 1294300 0 0 0 8357900 4158700 4199200 0 0 0 30062 439 31609 156934;156935 157819 157819 0 SGKYDLDFK KVVIGMDVAASEFFRSGKYDLDFKSPDDPS ASEFFRSGKYDLDFKSPDDPSRYISPDQLA R S G F K S 0 0 0 2 0 0 0 1 0 0 1 2 0 1 0 1 0 0 1 0 0 0 9 1 1071.5237 P06733;A0A2R8Y6G6 P06733 254 262 ENO1 Alpha-enolase yes no 2 0.0023501 120.33 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 0.79979 0.76423 21.433 6 Median 1.1218 1.055 NaN 1 0 Median 0.93223 0.86753 20.576 3 0 Median 0.64836 0.67323 NaN 1 0 Median 0.68617 0.65173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 344710000 171230000 173480000 144950000 67067000 77883000 117980000 56803000 61172000 34915000 20863000 14052000 46874000 26501000 20373000 0 0 0 0 0 0 30063 1873 31610 156936;156937;156938;156939;156940;156941 157820;157821;157822;157823;157824;157825;157826;157827 157820 8 SGKYDLDFKSPDDPSR KVVIGMDVAASEFFRSGKYDLDFKSPDDPS GKYDLDFKSPDDPSRYISPDQLADLYKSFI R S G S R Y 0 1 0 4 0 0 0 1 0 0 1 2 0 1 2 3 0 0 1 0 0 0 16 2 1825.8483 P06733;A0A2R8Y6G6 P06733 254 269 ENO1 Alpha-enolase yes no 2;3;4 1.1999E-10 117.07 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.86476 0.9663 9.9067 9 Median 0.86553 0.96716 7.2127 4 0 Median 0.88326 0.90508 9.4077 2 0 Median NaN NaN NaN 0 0 Median 0.83682 0.91359 3.824 2 1 Median 1.0256 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median 253420000 131740000 121680000 185470000 96091000 89376000 6935900 3827500 3108400 0 0 0 54696000 29006000 25689000 6325800 2819400 3506400 0 0 0 30064 1873 31611 156942;156943;156944;156945;156946;156947;156948;156949;156950 157828;157829;157830;157831;157832;157833;157834;157835;157836;157837;157838;157839;157840 157836 13 SGLGELILPENEPGSSIMPGK MKIANDIRFLGSGPRSGLGELILPENEPGS ILPENEPGSSIMPGKVNPTQCEAMTMVAAQ R S G G K V 0 0 1 0 0 0 3 4 0 2 3 1 1 0 3 3 0 0 0 0 0 0 21 0 2124.0773 P07954 P07954 351 371 FH Fumarate hydratase, mitochondrial yes yes 2 1.3961E-06 48.659 By MS/MS By matching 1 1 0.69006 0.64083 6.7036 2 Median 0.63325 0.61116 NaN 1 0 Median 0.75196 0.67194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2671300 1535600 1135700 2248500 1331300 917230 422810 204360 218450 0 0 0 0 0 0 0 0 0 0 0 0 30065 1896 31612 156951;156952 157841 157841 1 SGLGPADLALLGLSAER DSRKPLQKKRKRSPKSGLGPADLALLGLSA LGPADLALLGLSAERVWLDKSLFDQAESSY K S G E R V 3 1 0 1 0 0 1 3 0 0 5 0 0 0 1 2 0 0 0 0 0 0 17 0 1638.8941 E9PRY8;A0A087X1X7;E9PKH7;E9PNC8;E9PPY1;E9PJV8;E9PN56;E9PN71;E9PRL0;E9PQR8 E9PRY8 144 160 EEF1D yes no 2 0.049184 21.301 By MS/MS By matching 1 1 0.67183 0.63064 29.5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73873 0.77692 NaN 1 0 Median 0.61099 0.5119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1629200 932950 696280 0 0 0 0 0 0 1376700 796740 579920 252570 136200 116360 0 0 0 0 0 0 30066 985 31613 156953;156954 157842 157842 1 SGLIFYR DIVTTTTHKTLRGARSGLIFYRKGVKAVDP HKTLRGARSGLIFYRKGVKAVDPKTGREIP R S G Y R K 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 7 0 854.46504 P34897;H0YIZ0;G3V2Y4 P34897 287 293 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.007586 89.903 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 2 2 3 1 2 1.3848 1.2614 16.381 13 Median 1.2153 1.1781 9.6222 3 0 Median 1.3959 1.2126 5.5785 2 0 Median 1.0173 1.022 4.4926 2 1 Median 1.6507 1.4145 26.279 3 0 Median 1.3856 1.3942 NaN 1 0 Median 1.7076 1.4658 2.1385 2 0 Median 64696000 29201000 35495000 23341000 10791000 12550000 9814800 4211300 5603500 21378000 10360000 11018000 5769400 2190600 3578900 2079400 858320 1221100 2313700 789170 1524600 30067 2228 31614 156955;156956;156957;156958;156959;156960;156961;156962;156963;156964;156965;156966;156967 157843;157844;157845;157846;157847;157848 157844 6 SGLLVLTTPLASLAPR ______________________________ GLLVLTTPLASLAPRLASILTSAARLVNHT R S G P R L 2 1 0 0 0 0 0 1 0 0 5 0 0 0 2 2 2 0 0 1 0 0 16 0 1607.961 Q13057;K7EN91;K7ESK6;K7ES73;K7EP09;K7EPT0 Q13057 6 21 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase yes no 2 0.00011968 67.153 By MS/MS By MS/MS 1 1 0.77967 0.71561 1.6962 2 Median 0.72659 0.70708 NaN 1 0 Median 0.83662 0.72425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10004000 5228800 4774900 4915800 2672500 2243300 5088000 2556400 2531600 0 0 0 0 0 0 0 0 0 0 0 0 30068 2783 31615 156968;156969 157849;157850;157851;157852;157853 157852 5 SGLNQIPNR FEESMKWKKLTNAQRSGLNQIPNRRFTLWW LTNAQRSGLNQIPNRRFTLWWSPTINRANV R S G N R R 0 1 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 9 0 997.53049 Q6P2Q9;I3L3Z8 Q6P2Q9 1524 1532 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.060947 45.718 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30069 3157 31616 156970 157854 157854 1 SGLNQIPNRR FEESMKWKKLTNAQRSGLNQIPNRRFTLWW TNAQRSGLNQIPNRRFTLWWSPTINRANVY R S G R R F 0 2 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 10 1 1153.6316 Q6P2Q9;I3L3Z8 Q6P2Q9 1524 1533 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.048693 32.841 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1.1831 1.0384 17.624 5 Median NaN NaN NaN 0 0 Median 1.2502 1.2625 NaN 1 0 Median 0.78488 0.9915 NaN 1 0 Median 1.1881 1.0759 NaN 1 0 Median 0.71725 0.7759 NaN 1 0 Median 1.1831 1.0384 NaN 1 0 Median 10261000 5362600 4898800 0 0 0 855920 415690 440230 2145800 1263700 882170 818790 387750 431030 3522400 1835500 1686900 2918400 1460000 1458500 30070 3157 31617 156971;156972;156973;156974;156975 157855 157855 1 SGLQGYDMSTFIR ASRNTLFNLSNFLDKSGLQGYDMSTFIRRY DKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ K S G I R R 0 1 0 1 0 1 0 2 0 1 1 0 1 1 0 2 1 0 1 0 0 0 13 0 1473.6922 Q13492;E9PI56;E9PKP6;E9PLJ8 Q13492 113 125 PICALM Phosphatidylinositol-binding clathrin assembly protein yes no 2 0.0019808 49.5 By MS/MS By matching By MS/MS By matching 2 1 2 2 1.0944 0.96492 23.984 7 Median 1.1793 1.1382 23.412 2 0 Median 1.0647 0.92351 NaN 1 0 Median 1.1074 1.1748 1.5984 2 0 Median 0.91233 0.78675 28.869 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18249000 8046500 10202000 5913300 2205500 3707800 2868100 1288500 1579600 8078100 3786600 4291500 1389100 765880 623190 0 0 0 0 0 0 30071 2820 31618 156976;156977;156978;156979;156980;156981;156982 157856;157857;157858 157857 3 SGLRQDPQSTAAATVLKR ______________________________ RQDPQSTAAATVLKRAVELDSESRYPQALV K S G K R A 3 2 0 1 0 2 0 1 0 0 2 1 0 0 1 2 2 0 0 1 0 0 18 2 1898.0334 B8ZZL5;Q8WV92;F8WED5;A0A1W2PP14 B8ZZL5 4 21 MITD1 MIT domain-containing protein 1 yes no 3;4 0.00010452 40.349 By MS/MS 2 1.098 0.95201 6.8849 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.098 0.95201 6.8849 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4423900 1991600 2432200 0 0 0 0 0 0 0 0 0 4423900 1991600 2432200 0 0 0 0 0 0 30072 648 31619 156983;156984 157859;157860;157861 157861 3 SGLSSPIYIDLR LYDVQAFKFGDFVLKSGLSSPIYIDLRGIV VLKSGLSSPIYIDLRGIVSRPRLLSQVADI K S G L R G 0 1 0 1 0 0 0 1 0 2 2 0 0 0 1 3 0 0 1 0 0 0 12 0 1319.7085 P11172;E9PFD2;F2Z3P2;F2Z303;F8WDG4 P11172 30 41 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.00057239 74.841 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.97301 0.85051 33.779 5 Median 0.97301 0.94291 NaN 1 0 Median 1.0142 0.85051 NaN 1 0 Median 0.98162 0.98968 NaN 1 0 Median 0.46114 0.438 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75042 0.6452 NaN 1 0 Median 44576000 21090000 23486000 7172700 3454000 3718700 32671000 15567000 17104000 2718900 1093700 1625200 295810 217310 78494 0 0 0 1717300 757750 959600 30073 1953 31620 156985;156986;156987;156988;156989 157862;157863;157864;157865 157862 4 SGLTPLHLAAQEDR SLLLGRNANVNLSNKSGLTPLHLAAQEDRV KSGLTPLHLAAQEDRVNVAEVLVNQGAHVD K S G D R V 2 1 0 1 0 1 1 1 1 0 3 0 0 0 1 1 1 0 0 0 0 0 14 0 1506.7791 Q12955 Q12955 696 709 ANK3 Ankyrin-3 yes yes 3 0.042906 23.831 By MS/MS 1 1.07 0.93959 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.07 0.93959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1440800 643520 797260 0 0 0 0 0 0 0 0 0 1440800 643520 797260 0 0 0 0 0 0 30074 2773 31621 156990 157866 157866 1 SGLTPLHVAAHYDNQK NLLLQKSASPDAAGKSGLTPLHVAAHYDNQ GLTPLHVAAHYDNQKVALLLLDQGASPHAA K S G Q K V 2 0 1 1 0 1 0 1 2 0 2 1 0 0 1 1 1 0 1 1 0 0 16 0 1749.8798 Q12955 Q12955 597 612 ANK3 Ankyrin-3 yes yes 3;4 3.7216E-05 58.83 By matching By MS/MS 1 3 0.86403 0.96207 31.705 4 Median NaN NaN NaN 0 0 Median 1.8636 1.6205 NaN 1 0 Median 0.86403 0.96207 13.088 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22174000 11547000 10628000 0 0 0 907050 449370 457690 21267000 11098000 10170000 0 0 0 0 0 0 0 0 0 30075 2773 31622 156991;156992;156993;156994 157867;157868 157868 2 SGLVPQQIK SSVAVLTQESFAEHRSGLVPQQIKVATLNS SFAEHRSGLVPQQIKVATLNSEEESDPPTY R S G I K V 0 0 0 0 0 2 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 968.56548 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JQ82;C9JMQ6 Q00341 17 25 HDLBP Vigilin yes no 2 0.028744 36.701 By matching By MS/MS By matching By matching By matching 1 1 1 2 1 0.98777 0.91191 9.0972 6 Median 1.0044 0.96624 NaN 1 0 Median 0.97137 0.82145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1442 1.0423 NaN 1 0 Median 0.76657 0.85998 3.5197 2 0 Median 1.0618 0.94321 NaN 1 0 Median 27325000 12878000 14447000 6156800 2821200 3335600 12467000 5789700 6677400 0 0 0 1082300 590420 491850 4219200 2135000 2084200 3399600 1541500 1858100 30076 4 31623 156995;156996;156997;156998;156999;157000 157869 157869 1 SGMFWLR GYGPIEQLPDYNRIRSGMFWLRF_______ LPDYNRIRSGMFWLRF______________ R S G L R F 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 0 0 0 7 0 895.43744 P31930 P31930 473 479 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.051961 39.218 By matching By matching By MS/MS By matching 1 2 1 1 1.5322 1.3436 8.2465 5 Median 1.1899 1.1727 NaN 1 0 Median 1.611 1.4 2.8704 2 0 Median 1.2128 1.2229 NaN 1 0 Median 1.537 1.3436 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15102000 6273700 8828200 4603700 1936300 2667400 7544000 2854000 4690000 2479200 1291400 1187800 474960 191960 282990 0 0 0 0 0 0 30077 2205 31624 157001;157002;157003;157004;157005 157870 157870 1 SGMSHEEDQLIPNLYR LRWSKQTDVGITHFRSGMSHEEDQLIPNLY GMSHEEDQLIPNLYRYIQPWESEFIDSQRV R S G Y R Y 0 1 1 1 0 1 2 1 1 1 2 0 1 0 1 2 0 0 1 0 0 0 16 0 1887.8785 Q6P2Q9 Q6P2Q9 1355 1370 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.2405E-32 154.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 2 0.90097 0.87957 20.618 11 Median 0.90097 0.84711 NaN 1 0 Median 1.0799 0.91259 17.715 3 0 Median 0.69497 0.764 23.179 4 1 Median 1.1592 1.0238 NaN 1 0 Median 0.96688 1.0007 1.4118 2 0 Median NaN NaN NaN 0 0 Median 70448000 38346000 32103000 9204600 4848000 4356600 9594400 4560500 5033900 35495000 20533000 14962000 909390 408240 501150 15245000 7996100 7248900 0 0 0 30078 3157 31625;31626 157006;157007;157008;157009;157010;157011;157012;157013;157014;157015;157016 157871;157872;157873;157874;157875;157876;157877;157878;157879;157880;157881 157875 1678 11 SGMVQTEAQYR DIDVPKTIQMVRSQRSGMVQTEAQYRFIYM RSQRSGMVQTEAQYRFIYMAVQHYIETLQR R S G Y R F 1 1 0 0 0 2 1 1 0 0 0 0 1 0 0 1 1 0 1 1 0 0 11 0 1268.5819 Q06124;A0A0U1RRI0 Q06124 506 516 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.00011928 135.79 By MS/MS By MS/MS 1 3 1.1582 1.0551 54.916 4 Median 1.1174 1.072 NaN 1 0 Median 1.2004 1.0385 65.346 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23544000 11284000 12260000 7585600 3547700 4037900 15959000 7736200 8222400 0 0 0 0 0 0 0 0 0 0 0 0 30079 2721 31627 157017;157018;157019;157020 157882;157883;157884;157885 157882 4 SGNALFHASTLHR LMANYYNKVSTVFWKSGNALFHASTLHRLY WKSGNALFHASTLHRLYHLSREMRKNLTQD K S G H R L 2 1 1 0 0 0 0 1 2 0 2 0 0 1 0 2 1 0 0 0 0 0 13 0 1409.7164 Q14152 Q14152 286 298 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 8.1825E-31 208.56 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1.1959 1.0806 13.645 9 Median 1.0801 1.0444 17.411 3 0 Median 1.2725 1.0924 7.1009 4 0 Median 1.1885 1.3071 NaN 1 1 Median 1.2289 1.0806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162210000 74015000 88194000 90100000 42402000 47698000 61901000 26920000 34980000 6792500 3200600 3592000 3415300 1491800 1923500 0 0 0 0 0 0 30080 2860 31628 157021;157022;157023;157024;157025;157026;157027;157028;157029 157886;157887;157888;157889;157890;157891;157892;157893;157894;157895;157896;157897;157898 157889 13 SGNELPLAVASTADLIR LQRYALNRITVWRSRSGNELPLAVASTADL NELPLAVASTADLIRCKLLDVTGGLGTDEL R S G I R C 3 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 1 0 0 1 0 0 17 0 1725.9261 Q9Y4W2 Q9Y4W2 80 96 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 2.1097E-05 63.76 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.98922 1.056 22.228 5 Median NaN NaN NaN 0 0 Median 1.2805 1.1664 NaN 1 0 Median 0.79467 0.84061 32.266 2 0 Median 1.3106 1.106 NaN 1 0 Median 0.96215 1.0207 NaN 1 0 Median NaN NaN NaN 0 0 Median 9679900 4991900 4688100 0 0 0 726620 405930 320690 6203200 3176400 3026800 340360 145760 194600 2409700 1263700 1146000 0 0 0 30081 4448 31629 157030;157031;157032;157033;157034 157899;157900;157901;157902;157903 157900 5 SGNIVAGIANESK DSVDKVADGFKVVARSGNIVAGIANESKKL ARSGNIVAGIANESKKLYGAQFHPEVGLTE R S G S K K 2 0 2 0 0 0 1 2 0 2 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1258.6517 P49915 P49915 170 182 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 6.3474E-06 91.937 By MS/MS By MS/MS By MS/MS 1 1 1 2.45 2.1302 46.558 2 Median 1.7237 1.5327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.4823 2.9607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29808000 6996500 22811000 25139000 6396700 18742000 0 0 0 0 0 0 4669100 599840 4069200 0 0 0 0 0 0 30082 2405 31630 157035;157036;157037 157904;157905;157906 157905 3 SGNIVAGIANESKK DSVDKVADGFKVVARSGNIVAGIANESKKL RSGNIVAGIANESKKLYGAQFHPEVGLTEN R S G K K L 2 0 2 0 0 0 1 2 0 2 0 2 0 0 0 2 0 0 0 1 0 0 14 1 1386.7467 P49915 P49915 170 183 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 0.0014816 51.013 By MS/MS By MS/MS By MS/MS 2 1 1 0.96109 1.0441 21.751 4 Median 0.81197 0.83813 27.92 2 1 Median 1.1642 1.0902 NaN 1 1 Median 0.93474 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12814000 6629500 6184400 7246100 4024900 3221200 3727600 1694300 2033300 1840200 910270 929880 0 0 0 0 0 0 0 0 0 30083 2405 31631 157038;157039;157040;157041 157907;157908;157909;157910 157907 4 SGNVAELALK PEIREKIEDAKESQRSGNVAELALKATLVE KESQRSGNVAELALKATLVESSTSGFTPGG R S G L K A 2 0 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1000.5553 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 662 671 NASP Nuclear autoantigenic sperm protein yes no 2 0.00063896 96.331 By MS/MS By MS/MS By matching 2 2 1 1.0481 0.97224 30.502 5 Median 1.0606 1.0017 4.2157 2 0 Median 1.0259 0.85836 58.645 2 1 Median NaN NaN NaN 0 0 Median 1.0279 0.87582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146320000 71892000 74425000 77044000 38041000 39004000 67733000 33132000 34601000 0 0 0 1539300 719440 819910 0 0 0 0 0 0 30084 2376 31632 157042;157043;157044;157045;157046 157911;157912;157913;157914;157915;157916;157917 157916 7 SGNYPSSLSNETDR MVKPSIDYVRHKKFRSGNYPSSLSNETDRL RSGNYPSSLSNETDRLVHWCHGAPGVIHML R S G D R L 0 1 2 1 0 0 1 1 0 0 1 0 0 0 1 4 1 0 1 0 0 0 14 0 1525.6645 Q9NS86 Q9NS86 303 316 LANCL2 LanC-like protein 2 yes yes 2 0.0089669 49.5 By MS/MS 1 0.80425 0.68795 NaN 1 Median NaN NaN NaN 0 0 Median 0.80425 0.68795 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1342300 781700 560580 0 0 0 1342300 781700 560580 0 0 0 0 0 0 0 0 0 0 0 0 30085 4098 31633 157047 157918 157918 1 SGPASTFNDR VEWVKEMVANWDSLRSGPASTFNDRVFASE WDSLRSGPASTFNDRVFASELNAGIIKTDQ R S G D R V 1 1 1 1 0 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 0 0 10 0 1050.473 Q9P2J5 Q9P2J5 786 795 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.018384 53.756 By MS/MS By MS/MS By matching 1 1 1 1.0369 1.0472 16.364 3 Median 1.0369 1.0472 NaN 1 0 Median 1.0121 0.85155 NaN 1 1 Median 1.1213 1.1763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9765300 5186400 4578900 1018800 615860 402940 6132200 3345700 2786600 2614200 1224900 1389300 0 0 0 0 0 0 0 0 0 30086 4224 31634 157048;157049;157050 157919;157920 157920 2 SGPEPLQEGPGPK ATVCKDGRVRVYRPRSGPEPLQEGPGPKGG PRSGPEPLQEGPGPKGGRGARIVWVCDGRC R S G P K G 0 0 0 0 0 1 2 3 0 0 1 1 0 0 4 1 0 0 0 0 0 0 13 0 1291.6408 A0A0A6YYL4;P57737 A0A0A6YYL4 668 680 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 0.00014061 95.573 By MS/MS By MS/MS 1 3 0.84889 0.75832 8.2614 4 Median 0.72579 0.72164 NaN 1 1 Median 0.90293 0.79685 9.673 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16203000 9149900 7053600 2241500 1385100 856350 13962000 7764800 6197200 0 0 0 0 0 0 0 0 0 0 0 0 30087 209 31635 157051;157052;157053;157054 157921;157922;157923;157924;157925 157922 5 SGPFAPVLSATSR ______________________________ SRSGPFAPVLSATSRGVAGALRPLVQATVP R S G S R G 2 1 0 0 0 0 0 1 0 0 1 0 0 1 2 3 1 0 0 1 0 0 13 0 1288.6776 P47985;P0C7P4 P47985 8 20 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 2 2.6983E-05 93.096 By MS/MS By matching 1 1 0.92455 0.83136 25.354 2 Median NaN NaN NaN 0 0 Median 1.2297 0.9946 NaN 1 0 Median 0.69513 0.69491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10761000 5232600 5528500 0 0 0 8127700 3681200 4446500 2633400 1551400 1082000 0 0 0 0 0 0 0 0 0 30088 2357 31636 157055;157056 157926;157927;157928;157929;157930 157929 5 SGPFGQIFRPDNFVFGQSGAGNNWAK AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF NFVFGQSGAGNNWAKGHYTEGAELVDSVLD R S G A K G 2 1 3 1 0 2 0 5 0 1 0 1 0 4 2 2 0 1 0 1 0 0 26 1 2797.3361 P04350;M0QY85;M0R278;M0QZL7;M0R1I1;Q5JP53;P07437;Q5ST81;P68371;Q13885;Q9BVA1 P68371 78 103 TUBB4A;TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 1.1497E-223 267.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 3 6 1 6 6 0.87919 0.88529 20.407 30 Median 0.8137 0.83131 5.2937 8 1 Median 0.84806 0.77222 3.527 3 0 Median 0.83486 0.91539 8.5219 6 0 Median 0.972 0.93096 NaN 1 0 Median 1.2796 1.32 6.8379 6 0 Median 1.0056 0.86991 5.6718 6 0 Median 374850000 191710000 183140000 66978000 37856000 29122000 81374000 42632000 38742000 136710000 72066000 64641000 6870700 3431900 3438800 69577000 29305000 40272000 13338000 6414200 6924200 30089 2634;1887;3849;2844;1849 31637 157057;157058;157059;157060;157061;157062;157063;157064;157065;157066;157067;157068;157069;157070;157071;157072;157073;157074;157075;157076;157077;157078;157079;157080;157081;157082;157083;157084;157085;157086 157931;157932;157933;157934;157935;157936;157937;157938;157939;157940;157941;157942;157943;157944;157945;157946;157947;157948;157949;157950;157951;157952;157953;157954;157955;157956;157957;157958;157959;157960;157961;157962;157963;157964;157965;157966;157967;157968 157934 38 SGPGLIGLGIK EGQQYCCRLVEMDSKSGPGLIGLGIKALQD MDSKSGPGLIGLGIKALQDKKYEDAVRNLT K S G I K A 0 0 0 0 0 0 0 4 0 2 2 1 0 0 1 1 0 0 0 0 0 0 11 0 1010.6124 Q6PGP7;D6RCE2 Q6PGP7 271 281 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.0090761 39.305 By MS/MS By MS/MS 1 1 0.90067 0.9115 11.604 2 Median 0.8731 0.8397 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92911 0.98945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7236400 3712500 3524000 6064500 3043600 3020900 0 0 0 1172000 668870 503090 0 0 0 0 0 0 0 0 0 30090 3169 31638 157087;157088 157969;157970 157969 2 SGPKPFSAPKPQTSPSPK THKNPALKAQSGPVRSGPKPFSAPKPQTSP KPFSAPKPQTSPSPKRATKKEPAVLELEGK R S G P K R 1 0 0 0 0 1 0 1 0 0 0 3 0 1 6 4 1 0 0 0 0 0 18 2 1836.9734 Q01518 Q01518 295 312 CAP1 Adenylyl cyclase-associated protein 1 yes yes 3;4 0.022313 17.021 By MS/MS By matching 2 2 0.47518 0.45598 12.113 4 Median 0.41972 0.40826 14.309 2 0 Median 0.50013 0.47345 3.9945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8033000 5270100 2762900 5522900 3728600 1794300 2510100 1541500 968600 0 0 0 0 0 0 0 0 0 0 0 0 30091 2686 31639 157089;157090;157091;157092 157971;157972 157972 2 SGPLFNFDVHDDVR HHSFYDFIVTKARGKSGPLFNFDVHDDVRL KSGPLFNFDVHDDVRLLSDATVEKDESHAG K S G V R L 0 1 1 3 0 0 0 1 1 0 1 0 0 2 1 1 0 0 0 2 0 0 14 0 1616.7583 Q14320;B0S8I6 Q14320 276 289 FAM50A Protein FAM50A yes no 3 0.0012112 38.028 By matching By matching By MS/MS By matching 1 1 2 1 1.0949 0.9615 15.688 5 Median 1.2072 1.236 NaN 1 0 Median 1.0153 0.87635 NaN 1 0 Median 1.0432 1.0737 15.612 2 0 Median 1.0949 0.92627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12172000 5990900 6181300 859230 390330 468900 973690 459580 514100 10148000 5062400 5085100 191820 78667 113150 0 0 0 0 0 0 30092 2873 31640 157093;157094;157095;157096;157097 157973;157974 157974 2 SGPNIYELR QLLLEFSFWNEPVPRSGPNIYELRSYQLRP NEPVPRSGPNIYELRSYQLRPGTMIEWGNY R S G L R S 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 9 0 1047.5349 O75323;C9K068;H7C333;C9J7B1 O75323 182 190 GBAS Protein NipSnap homolog 2 yes no 2 0.00092799 90.135 By MS/MS By MS/MS 2 1 0.82623 0.80668 18.943 3 Median 0.97531 0.9397 21.585 2 0 Median NaN NaN NaN 0 0 Median 0.8054 0.77372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58003000 28547000 29456000 43163000 20490000 22673000 0 0 0 14840000 8057200 6782700 0 0 0 0 0 0 0 0 0 30093 1658 31641 157098;157099;157100 157975;157976;157977;157978 157975 4 SGPPAPEEEEEEER EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ KSGPPAPEEEEEEERQSGNTEQKSKSKQHR K S G E R Q 1 1 0 0 0 0 7 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 14 0 1583.6587 Q9NTI5;A9IYQ1 Q9NTI5 1319 1332 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2 0.00055927 67.153 By MS/MS By MS/MS 1 1 0.5239 0.51596 15.351 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52282 0.57511 NaN 1 0 Median 0.52499 0.46288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5529400 3608500 1920900 0 0 0 0 0 0 4762600 3116700 1646000 766800 491870 274930 0 0 0 0 0 0 30094 4107 31642 157101;157102 157979;157980;157981 157979 3 SGPPAPEEEEEEERQSGNTEQK EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ EEEEEERQSGNTEQKSKSKQHRVSRRAQQR K S G Q K S 1 1 1 0 0 2 8 2 0 0 0 1 0 0 3 2 1 0 0 0 0 0 22 1 2456.0575 Q9NTI5;A9IYQ1 Q9NTI5 1319 1340 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 3 0.048507 10.684 By MS/MS 1 0.47415 0.53753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47415 0.53753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14381000 9057200 5324200 0 0 0 0 0 0 14381000 9057200 5324200 0 0 0 0 0 0 0 0 0 30095 4107 31643 157103 157982 157982 1 SGPPGPPGGPGMPPGGR EHAARIINDLLQSLRSGPPGPPGGPGMPPG PPGPPGGPGMPPGGRGRGRGQGNWGPPGGE R S G G R G 0 1 0 0 0 0 0 7 0 0 0 0 1 0 7 1 0 0 0 0 0 0 17 0 1470.7038 Q92945;A0A087WTP3 Q92945 395 411 KHSRP Far upstream element-binding protein 2 yes no 2 2.7616E-11 93.258 By MS/MS By MS/MS 1 1 0.39948 0.38413 23.086 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42147 0.45225 NaN 1 1 Median 0.37864 0.32627 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5230000 3733200 1496800 0 0 0 0 0 0 2801800 2121700 680100 2428200 1611500 816700 0 0 0 0 0 0 30096 3568 31644 157104;157105 157983;157984;157985;157986 157983 4 SGPRPVVLSGPSGAGK ______________________________ GPRPVVLSGPSGAGKSTLLKRLLQEHSGIF M S G G K S 1 1 0 0 0 0 0 4 0 0 1 1 0 0 3 3 0 0 0 2 0 0 16 1 1464.8049 B1ANH6;Q16774;B1ANH5 B1ANH6 2 17 GUK1 Guanylate kinase yes no 2 5.2513E-08 97.69 By MS/MS 1 0.61376 0.64149 NaN 1 Median 0.61376 0.64149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10559000 7102400 3456200 10559000 7102400 3456200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30097 574 31645 157106 157987 157987 1 SGPSAHAHLYSQHPSFQTQQAK CEVFHKCPICPMAFKSGPSAHAHLYSQHPS HLYSQHPSFQTQQAKLIYKCAMCDTVFTHK K S G A K L 3 0 0 0 0 4 0 1 3 0 1 1 0 1 2 4 1 0 1 0 0 0 22 0 2406.1465 Q8N1G0;H0Y5I5 Q8N1G0 803 824 ZNF687 Zinc finger protein 687 yes no 4 0.060861 6.8781 By matching By MS/MS 1 1 0.89515 0.88742 23.485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69308 0.75164 NaN 1 0 Median 1.1561 1.0477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6777400 3704900 3072500 0 0 0 0 0 0 4953200 2939500 2013700 1824200 765390 1058800 0 0 0 0 0 0 30098 3357 31646 157107;157108 157988 157988 1 SGPSLNELIPDGYNR TCTGFQKETLTFLKKSGPSLNELIPDGYNR SGPSLNELIPDGYNRCLVAGLLSPRFVDVQ K S G N R C 0 1 2 1 0 0 1 2 0 1 2 0 0 0 2 2 0 0 1 0 0 0 15 0 1630.7951 Q8WYP5 Q8WYP5 506 520 AHCTF1 Protein ELYS yes yes 2 0.00035654 57.836 By MS/MS 1 0.6908 0.76951 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6908 0.76951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2055000 1153600 901340 0 0 0 0 0 0 2055000 1153600 901340 0 0 0 0 0 0 0 0 0 30099 3524 31647 157109 157989;157990 157989 2 SGPSVPVSVQTK SEDDSAVPLAKAAPKSGPSVPVSVQTKDDV APKSGPSVPVSVQTKDDVYEAFMKEMEGLL K S G T K D 0 0 0 0 0 1 0 1 0 0 0 1 0 0 2 3 1 0 0 3 0 0 12 0 1184.6401 Q9Y2W2 Q9Y2W2 615 626 WBP11 WW domain-binding protein 11 yes yes 2 0.0042846 43.958 By matching By MS/MS 1 1 0.6426 0.62857 3.7009 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55443 0.61233 NaN 1 0 Median 0.74481 0.64524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9791200 5984200 3807100 0 0 0 0 0 0 4733300 2685900 2047400 5057900 3298300 1759600 0 0 0 0 0 0 30100 4394 31648 157110;157111 157991 157991 1 SGPSVPVSVQTKDDVYEAFMK SEDDSAVPLAKAAPKSGPSVPVSVQTKDDV VSVQTKDDVYEAFMKEMEGLL_________ K S G M K E 1 0 0 2 0 1 1 1 0 0 0 2 1 1 2 3 1 0 1 4 0 0 21 1 2283.1093 Q9Y2W2 Q9Y2W2 615 635 WBP11 WW domain-binding protein 11 yes yes 3 9.7729E-12 64.265 By matching By MS/MS By matching By matching 1 1 1 1 0.80628 0.86149 3.5929 4 Median 0.84441 0.87279 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76987 0.8789 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75912 0.85033 NaN 1 0 Median 0.88747 0.81187 NaN 1 0 Median 16669000 8860800 7808100 2439900 1201200 1238700 0 0 0 10906000 5853700 5051800 0 0 0 3195400 1744500 1450900 128040 61335 66704 30101 4394 31649 157112;157113;157114;157115 157992;157993 157992 2 SGQGAFGNMCR AVARIPRVRGGGTHRSGQGAFGNMCRGGRM GTHRSGQGAFGNMCRGGRMFAPTKTWRRWH R S G C R G 1 1 1 0 1 1 0 3 0 0 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1183.4863 P36578;H3BTP7;H3BU31 P36578 87 97 RPL4 60S ribosomal protein L4 yes no 2 0.00013666 85.676 By MS/MS By MS/MS By matching 1 1 1 1.1624 1.0625 6.7271 3 Plateau 1.0717 1.0625 NaN 1 0 Median 1.1624 0.97872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1099 1.1183 NaN 1 0 Median NaN NaN NaN 0 0 Median 12635000 5792500 6842700 1408500 717640 690910 8771600 3971400 4800200 0 0 0 0 0 0 2455100 1103500 1351600 0 0 0 30102 2260 31650 157116;157117;157118 157994;157995;157996 157996 3 SGQQIVGPPR EEEEGQRFYAGGSERSGQQIVGPPRKKSPN GGSERSGQQIVGPPRKKSPNELVDDLFKGA R S G P R K 0 1 0 0 0 2 0 2 0 1 0 0 0 0 2 1 0 0 0 1 0 0 10 0 1037.5618 Q9UNZ2;F2Z2K0 Q9UNZ2 102 111 NSFL1C NSFL1 cofactor p47 yes no 2 0.00095511 69.825 By matching By MS/MS 1 2 0.77087 0.75852 9.0596 3 Median 0.77087 0.75852 NaN 1 0 Median 0.81613 0.71206 11.727 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3394500 1885500 1509100 191280 113050 78222 3203300 1772400 1430900 0 0 0 0 0 0 0 0 0 0 0 0 30103 4353 31651 157119;157120;157121 157997 157997 1 SGQSALYDALFSSQSPK KQDFLKEIVETFANKSGQSALYDALFSSQS QSALYDALFSSQSPKDTSFLGSDDIGNIDV K S G P K D 2 0 0 1 0 2 0 1 0 0 2 1 0 1 1 5 0 0 1 0 0 0 17 0 1784.8581 P49792;J3KNE0;A6NKT7;Q7Z3J3 P49792 380 396 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 no no 2;3 2.0198E-12 151.74 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 9 4 2 1 0.91568 0.95964 26.411 19 Median 1.7113 1.6981 NaN 1 0 Median 0.99347 0.88429 61.484 2 0 Median 0.84997 0.94205 19.073 9 0 Median 1.0393 0.96495 25.968 4 0 Median 0.89341 0.94064 4.1109 2 1 Median 1.3397 1.1461 NaN 1 0 Median 100350000 52373000 47977000 2960500 1054000 1906600 1070900 616440 454410 90030000 47474000 42556000 2613700 1263600 1350100 3493100 1891800 1601300 181360 72790 108570 30104 2401;525 31652 157122;157123;157124;157125;157126;157127;157128;157129;157130;157131;157132;157133;157134;157135;157136;157137;157138;157139;157140 157998;157999;158000;158001;158002;158003;158004;158005;158006;158007;158008;158009;158010;158011;158012;158013;158014;158015 157999 18 SGQVLEVSGSK YAEIVHLTLPDGTKRSGQVLEVSGSKAVVQ GTKRSGQVLEVSGSKAVVQVFEGTSGIDAK R S G S K A 0 0 0 0 0 1 1 2 0 0 1 1 0 0 0 3 0 0 0 2 0 0 11 0 1089.5666 P21281;H0YC04 P21281 83 93 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 2 0.00058963 66.595 By MS/MS By MS/MS 1 1 1.278 1.1607 5.9716 2 Median 1.2493 1.2108 NaN 1 0 Median 1.3073 1.1127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6906300 2823600 4082700 1922900 766260 1156600 4983500 2057300 2926100 0 0 0 0 0 0 0 0 0 0 0 0 30105 2086 31653 157141;157142 158016;158017;158018;158019 158019 4 SGQVYSFGCNDEGALGR VQAEAGGMHTVCLSKSGQVYSFGCNDEGAL QVYSFGCNDEGALGRDTSVEGSEMVPGKVE K S G G R D 1 1 1 1 1 1 1 4 0 0 1 0 0 1 0 2 0 0 1 1 0 0 17 0 1815.7846 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 85 101 RCC1 Regulator of chromosome condensation yes no 2 3.7744E-12 146.5 By MS/MS By MS/MS 1 1 1.2131 1.2121 11.486 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3117 1.3146 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1219 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median 21869000 10514000 11355000 0 0 0 0 0 0 5621000 2498700 3122300 0 0 0 16248000 8015300 8232800 0 0 0 30106 2061 31654 157143;157144 158020;158021;158022;158023 158022 4 SGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASK KLREAQSDLNKTRLRSGSALLQSQSSTEDP KPDSEDLSSQSSASKASQEDANEIKSKRDE R S G S K A 3 0 0 4 0 3 4 1 0 0 4 3 0 0 3 11 1 0 0 0 0 0 37 2 3834.7767 Q5VTR2 Q5VTR2 515 551 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 4 2.4473E-16 57.811 By matching By MS/MS By MS/MS 1 1 1 0.49676 0.52073 16.574 3 Median 0.49676 0.52073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.42543 0.51122 NaN 1 0 Median 0.67106 0.68721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22744000 13734000 9010500 3041400 1613900 1427500 0 0 0 17302000 10750000 6551600 2401000 1369600 1031300 0 0 0 0 0 0 30107 3112 31655 157145;157146;157147 158024;158025 158024 2 SGSGTMNLGGSLTR YKLTSTVMLWLQTNKSGSGTMNLGGSLTRQ KSGSGTMNLGGSLTRQMEKDETVSDCSPHI K S G T R Q 0 1 1 0 0 0 0 4 0 0 2 0 1 0 0 3 2 0 0 0 0 0 14 0 1336.6405 B1AK87;B1AK88;P47756;B1AK85 B1AK87 170 183 CAPZB F-actin-capping protein subunit beta yes no 2 1.2556E-09 110.08 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.3166 1.1071 65.203 6 Median 0.7999 0.82858 NaN 1 0 Median 1.719 1.4554 34.43 2 1 Median NaN NaN NaN 0 0 Median 1.2876 1.0743 NaN 1 0 Median 1.4151 1.4205 NaN 1 0 Median 0.31218 0.28521 NaN 1 0 Median 178350000 90712000 87642000 138170000 76525000 61650000 17592000 3999400 13592000 0 0 0 13220000 5862400 7357800 8805300 3984600 4820800 562110 340990 221120 30108 566 31656 157148;157149;157150;157151;157152;157153 158026;158027;158028;158029;158030;158031;158032 158027 7 SGSHTVAVMNVGAPAAGMNAAVR EVYKLLAHVRPPVSKSGSHTVAVMNVGAPA MNVGAPAAGMNAAVRSTVRIGLIQGNRVLV K S G V R S 6 1 2 0 0 0 0 3 1 0 0 0 2 0 1 2 1 0 0 4 0 0 23 0 2167.0626 A0A2R8Y891;P08237;F8VZI0 A0A2R8Y891 501 523 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 3 6.8982E-36 151.87 By MS/MS By MS/MS By matching 1 1 1 0.79976 0.75664 33.748 3 Median 0.79976 0.75664 NaN 1 0 Median 1.2691 1.1048 NaN 1 0 Median 0.53396 0.56351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18700000 9716600 8983400 13041000 6795900 6244600 1955800 880500 1075300 3703700 2040200 1663500 0 0 0 0 0 0 0 0 0 30109 390 31657 157154;157155;157156 158033;158034;158035 158034 3 SGSIGAADSPENWEK RQPYFIYFPQIKTEKSGSIGAADSPENWEK SGSIGAADSPENWEKVWDNWRLLTMAGIFD K S G E K V 2 0 1 1 0 0 2 2 0 1 0 1 0 0 1 3 0 1 0 0 0 0 15 0 1546.69 D6R9T3;E7EMP6;Q96FZ2;D6RGK7;D6RAI0;D6RAZ3 D6R9T3 104 118 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes no 2 0.026105 39.148 By MS/MS 1 0.69643 0.75417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69643 0.75417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3052300 1539000 1513300 0 0 0 0 0 0 3052300 1539000 1513300 0 0 0 0 0 0 0 0 0 30110 807 31658 157157 158036 158036 1 SGSLAVDNADPILK GILRNHLTQFSPHFKSGSLAVDNADPILKI KSGSLAVDNADPILKIPFASLASRLTLAEL K S G L K I 2 0 1 2 0 0 0 1 0 1 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1398.7355 P35573 P35573 876 889 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 0.00039186 71.555 By MS/MS By MS/MS By matching 1 1 1 0.63318 0.61266 26.658 3 Median 0.63318 0.61266 NaN 1 0 Median 0.9728 0.86371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56847 0.51099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12715000 7516900 5198200 8937700 5696200 3241600 3536500 1673000 1863500 0 0 0 240890 147780 93114 0 0 0 0 0 0 30111 2243 31659 157158;157159;157160 158037;158038;158039 158037 3 SGSLENVPNVGVNK GPGLKRNRYLSFHFKSGSLENVPNVGVNKN KSGSLENVPNVGVNKNIFLKDQNIFVQKLL K S G N K N 0 0 3 0 0 0 1 2 0 0 1 1 0 0 1 2 0 0 0 3 0 0 14 0 1412.726 P53004 P53004 235 248 BLVRA Biliverdin reductase A yes yes 2 4.3392E-08 167.93 By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 1.0267 0.92116 16.028 6 Median 0.87228 0.7962 4.636 2 0 Median 1.1176 0.93615 NaN 1 0 Median 0.94323 0.90641 NaN 1 0 Median 1.3331 1.1274 6.1176 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 167270000 85329000 81939000 124270000 64702000 59565000 33052000 16236000 16816000 7106500 3196600 3909900 2842600 1194700 1647900 0 0 0 0 0 0 30112 2463 31660 157161;157162;157163;157164;157165;157166 158040;158041;158042;158043;158044;158045;158046 158042 6 SGSMDPSGAHPSVR RRDDPAARMSRSSGRSGSMDPSGAHPSVRQ RSGSMDPSGAHPSVRQTPSRQPPLPHRSRG R S G V R Q 1 1 0 1 0 0 0 2 1 0 0 0 1 0 2 4 0 0 0 1 0 0 14 0 1383.6201 Q07666 Q07666 18 31 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 2.414E-05 83.087 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 4 4 1 1 0.94581 0.81548 22.934 13 Median 0.96143 0.97414 NaN 1 0 Median 0.99149 0.84777 6.4727 2 1 Median 0.85397 0.84539 33.712 4 0 Median 0.93154 0.77706 3.7023 4 0 Median 1.2389 1.1961 NaN 1 0 Median 1.4346 1.2396 NaN 1 0 Median 34104000 18217000 15886000 937750 493450 444300 2688500 1191100 1497400 11785000 7048400 4737100 17596000 8966700 8629300 341710 179320 162390 754060 338440 415620 30113 2731 31661 157167;157168;157169;157170;157171;157172;157173;157174;157175;157176;157177;157178;157179 158047;158048;158049;158050;158051;158052;158053;158054;158055;158056;158057;158058;158059;158060;158061 158059 15 SGSMSAYEMR IRNYLSIFRKFDLDKSGSMSAYEMRMAIES FDLDKSGSMSAYEMRMAIESAGFKLNKKLY K S G M R M 1 1 0 0 0 0 1 1 0 0 0 0 2 0 0 3 0 0 1 0 0 0 10 0 1117.4532 P07384 P07384 632 641 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00033784 85.731 By MS/MS By MS/MS 1 1 1.3431 1.2293 9.8142 2 Median 1.1863 1.1469 NaN 1 0 Median 1.5206 1.3176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7256300 3133400 4123000 3757700 1688000 2069800 3498600 1445400 2053200 0 0 0 0 0 0 0 0 0 0 0 0 30114 1886 31662 157180;157181 158062;158063 158063 2 SGSPAVLAFAK RVFGAPEVLENLEVKSGSPAVLAFAKEKSF LEVKSGSPAVLAFAKEKSFGWPSFITYTVG K S G A K E 3 0 0 0 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1046.576 Q8TEM1 Q8TEM1 1725 1735 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0026606 52.255 By MS/MS By matching 2 1 0.72229 0.79546 29.334 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70573 0.76449 5.6146 2 0 Median 1.3243 1.2647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56515000 32508000 24007000 0 0 0 0 0 0 55049000 31917000 23132000 1466300 590920 875360 0 0 0 0 0 0 30115 3477 31663 157182;157183;157184 158064 158064 1 SGSSFVHQASFK VSRCIACQNTKSANKSGSSFVHQASFKFGQ ANKSGSSFVHQASFKFGQGDLPKPINSDFR K S G F K F 1 0 0 0 0 1 0 1 1 0 0 1 0 2 0 4 0 0 0 1 0 0 12 0 1280.6149 P49792 P49792 1447 1458 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2;3 0.00034365 94.309 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 4 3 1 2 1.1633 1.1373 18.133 16 Median 1.3063 1.2947 27.93 2 0 Median 1.3317 1.1625 29.326 4 1 Median 1.1141 1.1955 12.221 4 1 Linear 1.1843 1.1448 13.959 3 0 Median 1.1751 1.2454 NaN 1 0 Median 1.302 1.1156 6.0903 2 0 Median 90735000 42588000 48147000 2869200 1363800 1505400 12261000 5363200 6897500 61246000 29555000 31691000 7046900 3298700 3748200 1893000 785530 1107500 5418900 2221900 3197000 30116 2401 31664 157185;157186;157187;157188;157189;157190;157191;157192;157193;157194;157195;157196;157197;157198;157199;157200 158065;158066;158067;158068;158069;158070;158071;158072;158073;158074;158075;158076;158077;158078;158079 158070 15 SGSSQELDVKPSASPQER DQKTVARTPLGQRSRSGSSQELDVKPSASP SQELDVKPSASPQERSESDSSPDSKAKTRT R S G E R S 1 1 0 1 0 2 2 1 0 0 1 1 0 0 2 5 0 0 0 1 0 0 18 1 1900.9126 Q9UQ35 Q9UQ35 1539 1556 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.017162 19.912 By MS/MS By MS/MS 2 3 0.72653 0.74098 9.7556 5 Median 0.70857 0.72412 3.2545 2 0 Median 0.79862 0.77115 13.503 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7133900 3972000 3161900 2666200 1627600 1038600 4467700 2344400 2123300 0 0 0 0 0 0 0 0 0 0 0 0 30117 4359 31665 157201;157202;157203;157204;157205 158080;158081 158081 2 SGSWAAIYQDIR ______________________________ IDKSGSWAAIYQDIRHEASDFPCRVAKLPK K S G I R H 2 1 0 1 0 1 0 1 0 2 0 0 0 0 0 2 0 1 1 0 0 0 12 0 1365.6677 P18031 P18031 13 24 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 2 0.0041475 44.309 By MS/MS By matching 1 1 0.51432 0.55843 112.55 2 Median 1.2405 1.2377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.21324 0.25196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4133300 2395100 1738200 2809700 1394200 1415500 0 0 0 1323700 1000900 322780 0 0 0 0 0 0 0 0 0 30118 2052 31666 157206;157207 158082;158083 158083 2 SGSYSYLEER SSTSAGDRYDSLLGRSGSYSYLEERKPYSS SLLGRSGSYSYLEERKPYSSRLEKDDSTDF R S G E R K 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 3 0 0 2 0 0 0 10 0 1189.5251 O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974 908 917 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 0.01948 37.344 By MS/MS 2 1.2214 1.0332 6.5526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2214 1.0332 6.5526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2068700 986020 1082700 0 0 0 0 0 0 0 0 0 2068700 986020 1082700 0 0 0 0 0 0 30119 1508 31667 157208;157209 158084 158084 1 SGTALPSYR DKVKLMKFSRPKKTRSGTALPSYRKFVTKS RPKKTRSGTALPSYRKFVTKSSKKSIFVLP R S G Y R K 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 2 1 0 1 0 0 0 9 0 950.48214 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1827 1835 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.040164 52.482 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30120 2762 31668 157210 158085 158085 1 SGTDVDAANLR INNKNFHKSTGMTSRSGTDVDAANLRETFR MTSRSGTDVDAANLRETFRNLKYEVRNKND R S G L R E 2 1 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 11 0 1117.5364 C9JXR7;A8MVM1;P42574 C9JXR7 65 75 CASP3 Caspase-3;Caspase-3 subunit p17;Caspase-3 subunit p12 yes no 2 0.00017064 92.051 By MS/MS By MS/MS 1 1 1.1316 1.0023 8.1356 2 Median 1.1278 1.0616 NaN 1 0 Median 1.1354 0.94625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10908000 4947400 5960100 5749000 2511600 3237400 5158500 2435800 2722700 0 0 0 0 0 0 0 0 0 0 0 0 30121 545 31669 157211;157212 158086;158087;158088 158088 3 SGTGFGESYSLANPSIR DAKESRAAALRAANKSGTGFGESYSLANPS TGFGESYSLANPSIRAGEDIPQPTIFNGKL K S G I R A 1 1 1 0 0 0 1 3 0 1 1 0 0 1 1 4 1 0 1 0 0 0 17 0 1741.8271 H0YMN5;Q9ULG1 H0YMN5 487 503 INO80 DNA helicase INO80 yes no 2 4.3033E-11 91.914 By MS/MS 1 0.93432 1.0262 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93432 1.0262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6412800 3379000 3033800 0 0 0 0 0 0 6412800 3379000 3033800 0 0 0 0 0 0 0 0 0 30122 1199 31670 157213 158089 158089 1 SGTGIAAMSVMRPEQIMK AMVFSALGAAYGTAKSGTGIAAMSVMRPEQ GIAAMSVMRPEQIMKSIIPVVMAGIIAIYG K S G M K S 2 1 0 0 0 1 1 2 0 2 0 1 3 0 1 2 1 0 0 1 0 0 18 1 1905.9475 P27449 P27449 37 54 ATP6V0C V-type proton ATPase 16 kDa proteolipid subunit yes yes 2;3 3.5753E-11 109 By MS/MS By MS/MS By MS/MS By matching 7 4 2 1 1.2377 1.1692 17.566 14 Median 1.1592 1.1734 12.929 7 0 Median 1.2313 1.1112 6.2873 4 0 Median 1.6234 1.685 19.444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6255 1.2983 NaN 1 0 Median 167590000 75503000 92088000 121870000 56736000 65130000 19768000 9195400 10572000 20803000 7418600 13384000 0 0 0 0 0 0 5154000 2153300 3000600 30123 2154 31671 157214;157215;157216;157217;157218;157219;157220;157221;157222;157223;157224;157225;157226;157227 158090;158091;158092;158093;158094;158095;158096;158097;158098;158099;158100;158101;158102 158092 13 SGTHTLPVEQGDMQGHFSMSVPVESDIAPVAR LVFYYLIMAKGGIVRSGTHTLPVEQGDMQG SMSVPVESDIAPVARLLIYAILPDGEVVGD R S G A R L 2 1 0 2 0 2 2 3 2 1 1 0 2 1 3 4 2 0 0 4 0 0 32 0 3378.5973 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 508 539 yes yes 3;4 1.9169E-09 56.854 By MS/MS 3 3.2959 3.1711 119.33 2 Median 3.2959 3.1711 119.33 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23611000 13229000 10381000 23611000 13229000 10381000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 30124 734 31672 157228;157229;157230 158103;158104;158105 158104 3 SGTLGHPGSLDETTYER ______________________________ TLGHPGSLDETTYERLAEETLDSLAEFFED K S G E R L 0 1 0 1 0 0 2 3 1 0 2 0 0 0 1 2 3 0 1 0 0 0 17 0 1818.8384 C9JAX1;Q16595;A0A2R8Y5A1;A0A2R8Y4G3;A0A2R8Y577 C9JAX1 6 22 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes no 3 5.8763E-06 66.022 By MS/MS 1 1.3606 1.153 NaN 1 Median NaN NaN NaN 0 0 Median 1.3606 1.153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3389100 1246300 2142800 0 0 0 3389100 1246300 2142800 0 0 0 0 0 0 0 0 0 0 0 0 30125 685 31673 157231 158106 158106 1 SGTMNSYEMR IQKYQKIYREIDVDRSGTMNSYEMRKALEE IDVDRSGTMNSYEMRKALEEAGFKMPCQLH R S G M R K 0 1 1 0 0 0 1 1 0 0 0 0 2 0 0 2 1 0 1 0 0 0 10 0 1174.4747 P17655 P17655 619 628 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.00040727 76.827 By MS/MS By MS/MS 1 2 1.2035 1.0428 9.478 3 Plateau 1.0855 1.0743 NaN 1 0 Median 1.1199 0.96881 10.411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7539200 3626100 3913000 1896000 898370 997670 5643100 2727800 2915300 0 0 0 0 0 0 0 0 0 0 0 0 30126 2045 31674 157232;157233;157234 158107;158108;158109;158110;158111 158110 5 SGTNLDGNDEFDEQLR ______________________________ GTNLDGNDEFDEQLRMQELYGDGKDGDTQT M S G L R M 0 1 2 3 0 1 2 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 16 0 1808.7813 O43719;Q5H918;Q5H919 O43719 2 17 HTATSF1 HIV Tat-specific factor 1 yes no 2 5.7033E-10 122.42 By MS/MS By matching By MS/MS 1 1 1 1.07 1.0397 12.908 3 Median 1.07 1.0397 NaN 1 0 Median 1.434 1.2738 NaN 1 0 Median 0.93832 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8175500 4301100 3874400 3343800 1635900 1707900 148950 74003 74946 4682700 2591200 2091600 0 0 0 0 0 0 0 0 0 30127 1586 31675 157235;157236;157237 158112;158113;158114;158115 158113 4 SGTSEFLNK MTREELVKNLGTIAKSGTSEFLNKMTEAQE LGTIAKSGTSEFLNKMTEAQEDGQSTSELI K S G N K M 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 2 1 0 0 0 0 0 9 0 981.47673 P14625;Q96GW1;A0A1W2PRR1 P14625 169 177 HSP90B1 Endoplasmin yes no 2 0.0049266 79.809 By MS/MS By MS/MS 2 2 1.3377 1.1722 10.776 3 Median 1.0237 0.98828 NaN 1 1 Median 1.3663 1.1891 2.0292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76661000 33033000 43628000 16464000 8242600 8221000 60198000 24790000 35407000 0 0 0 0 0 0 0 0 0 0 0 0 30128 2006 31676 157238;157239;157240;157241 158116;158117;158118 158117 3 SGTSIPLHDHPGMHGMLK IYETDGFSLGVFLLKSGTSIPLHDHPGMHG SIPLHDHPGMHGMLKVLYGTVRISCMDKLD K S G L K V 0 0 0 1 0 0 0 3 3 1 2 1 2 0 2 2 1 0 0 0 0 0 18 0 1913.924 Q96SZ5 Q96SZ5 105 122 ADO 2-aminoethanethiol dioxygenase yes yes 4 0.031084 13.636 By MS/MS 1 0.58323 0.56486 NaN 1 Median 0.58323 0.56486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431900 2046400 1385500 3431900 2046400 1385500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30129 3739 31677 157242 158119 158119 1 SGTTPKPVINSTPGR PFRTPSNGAEGLTPRSGTTPKPVINSTPGR SGTTPKPVINSTPGRTPLRDKLNINPEDGM R S G G R T 0 1 1 0 0 0 0 2 0 1 0 1 0 0 3 2 3 0 0 1 0 0 15 1 1510.8104 Q99459 Q99459 427 441 CDC5L Cell division cycle 5-like protein yes yes 3 0.020033 21.831 By matching By MS/MS By matching By MS/MS 1 2 1 1 0.76787 0.76225 11.203 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55859 0.63441 NaN 1 0 Median 0.83092 0.78907 9.4759 2 0 Median 0.73848 0.82072 NaN 1 0 Median 0.86694 0.76225 NaN 1 0 Median 6623400 3983600 2639800 0 0 0 0 0 0 3940600 2491900 1448700 1115100 564430 550650 1012700 591900 420770 554970 335330 219630 30130 3745 31678 157243;157244;157245;157246;157247 158120;158121 158120 2 SGTTQNANESHIVVQALR TVLRGSGNLLRQLNKSGTTQNANESHIVVQ TQNANESHIVVQALRLNTMSKFTFTDCTRF K S G L R L 2 1 2 0 0 2 1 1 1 1 1 0 0 0 0 2 2 0 0 2 0 0 18 0 1923.9763 Q8NCM8 Q8NCM8 1886 1903 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 2.5339E-13 126.63 By MS/MS By MS/MS By matching 1 1 1 0.74485 0.72527 23.415 3 Median 0.74485 0.72527 NaN 1 0 Median 1.2993 1.0468 NaN 1 0 Median 0.62456 0.67729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35556000 18713000 16844000 18095000 9988400 8106300 13491000 5808500 7682500 3970600 2915700 1055000 0 0 0 0 0 0 0 0 0 30131 3418 31679 157248;157249;157250 158122;158123;158124 158124 3 SGTTSESGALSLEPSHIGDLQK LEKRTSPQVLGSILKSGTTSESGALSLEPS GALSLEPSHIGDLQKADTSSQGALVFLSKD K S G Q K A 1 0 0 1 0 1 2 3 1 1 3 1 0 0 1 5 2 0 0 0 0 0 22 0 2213.0812 Q7Z417 Q7Z417 582 603 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 yes yes 3 0.00074731 39.935 By MS/MS 1 1.0765 1.0037 NaN 1 Median 1.0765 1.0037 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9700800 4452000 5248700 9700800 4452000 5248700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30132 3243 31680 157251 158125 158125 1 SGTYLQGTFR FSEHLPLSKLQQGIKSGTYLQGTFRASREN QQGIKSGTYLQGTFRASRENYLEATVWIHG K S G F R A 0 1 0 0 0 1 0 2 0 0 1 0 0 1 0 1 2 0 1 0 0 0 10 0 1128.5564 Q9Y2L1;G3V1J5;F2Z2C0 Q9Y2L1 243 252 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.047759 28.727 By MS/MS 1 1.3473 1.1536 NaN 1 Median NaN NaN NaN 0 0 Median 1.3473 1.1536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2132600 1042900 1089700 0 0 0 2132600 1042900 1089700 0 0 0 0 0 0 0 0 0 0 0 0 30133 4384 31681 157252 158126 158126 1 SGVAITFLTK EDYIHRIGRTGRAGKSGVAITFLTKEDSAV GRAGKSGVAITFLTKEDSAVFYELKQAILE K S G T K E 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1035.5964 Q9BUQ8 Q9BUQ8 761 770 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0042842 53.751 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.2905 1.1635 7.6581 5 Median 1.2827 1.2916 NaN 1 0 Median 1.4071 1.2117 NaN 1 0 Median 0.9739 1.0635 NaN 1 0 Median 1.3896 1.1635 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2905 1.1033 NaN 1 0 Median 13461000 6342600 7118400 1477100 640920 836180 728110 326750 401360 10242000 4938900 5302800 830260 353200 477050 0 0 0 183760 82777 100980 30134 3842 31682 157253;157254;157255;157256;157257 158127;158128 158127 2 SGVAYIAAPSGSAADK DAFFPFRDNVDRAKRSGVAYIAAPSGSAAD GVAYIAAPSGSAADKVVIEACDELGIILAH R S G D K V 5 0 0 1 0 0 0 2 0 1 0 1 0 0 1 3 0 0 1 1 0 0 16 0 1463.7256 P31939 P31939 554 569 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 2 8.3891E-10 102.97 By MS/MS By MS/MS By matching 1 1 1 1.0219 0.85303 38.695 3 Plateau 0.97767 0.92434 NaN 1 0 Median 1.0219 0.85303 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53062 0.45592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31191000 15268000 15923000 8893200 4302600 4590600 21750000 10598000 11151000 0 0 0 548360 367610 180750 0 0 0 0 0 0 30135 2207 31683 157258;157259;157260 158129;158130;158131;158132;158133 158133 5 SGVDADSSYFK WITNKMGKKRIENFKSGVDADSSYFKIFKT ENFKSGVDADSSYFKIFKTKHD________ K S G F K I 1 0 0 2 0 0 0 1 0 0 0 1 0 1 0 3 0 0 1 1 0 0 11 0 1174.5142 Q9Y394 Q9Y394 322 332 DHRS7 Dehydrogenase/reductase SDR family member 7 yes yes 2 0.0054913 46.001 By matching By MS/MS 1 1 1.3293 1.1769 12.848 2 Median 1.1525 1.0747 NaN 1 0 Median 1.5331 1.2888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11604000 5019800 6584200 8365700 3809400 4556400 3238200 1210400 2027800 0 0 0 0 0 0 0 0 0 0 0 0 30136 4408 31684 157261;157262 158134;158135 158135 2 SGVGNIFIK PVRIMWSQRDPSLRKSGVGNIFIKNLDKSI DPSLRKSGVGNIFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 2 0 1 0 1 0 1 0 0 0 1 0 0 9 0 933.52837 P11940;E7EQV3;A0A087WTT1;Q4VXU2;E5RGH3;E5RJB9;E5RH24;Q96DU9 P11940 96 104 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 2 0.015224 43.769 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1853 1.1294 19.088 4 Median 1.161 1.0328 NaN 1 0 Median 1.1183 0.93167 NaN 1 0 Median 1.2101 1.2351 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.399 1.4333 NaN 1 0 Median NaN NaN NaN 0 0 Median 73893000 32652000 41241000 24743000 11195000 13547000 31187000 14424000 16763000 9605900 3909200 5696700 0 0 0 8358200 3123700 5234500 0 0 0 30137 1973 31685 157263;157264;157265;157266 158136;158137;158138;158139 158136 4 SGVGNVFIK PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI DPSLRKSGVGNVFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 9 0 919.51272 B1ANR0;Q13310;B1ANR1;H0YEQ8 B1ANR0 96 104 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.032793 35.618 By MS/MS By matching By matching By matching 1 1 1 1 1.2127 1.0712 29.897 4 Median NaN NaN NaN 0 0 Median 1.092 0.91866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4365 1.249 NaN 1 0 Median 1.3467 1.3908 NaN 1 0 Median 0.83329 0.72042 NaN 1 0 Median 11325000 4939000 6386000 0 0 0 7655000 3413000 4242100 0 0 0 833410 358320 475090 2559300 1026000 1533300 277290 141680 135620 30138 576 31686 157267;157268;157269;157270 158140 158140 1 SGVIQDALKK SEDEALCVVDLLKEKSGVIQDALKKSSKGE LLKEKSGVIQDALKKSSKGELTTLIHQLQE K S G K K S 1 0 0 1 0 1 0 1 0 1 1 2 0 0 0 1 0 0 0 1 0 0 10 1 1057.6132 Q86UP2 Q86UP2 312 321 KTN1 Kinectin yes yes 2 0.012069 56.258 By MS/MS 2 1.1275 1.0484 NaN 1 Median NaN NaN NaN 0 0 Median 1.1275 1.0484 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6208600 3200700 3008000 0 0 0 6208600 3200700 3008000 0 0 0 0 0 0 0 0 0 0 0 0 30139 3280 31687 157271;157272 158141;158142 158141 2 SGVISGGASDLK QRHKTVALDGTLFQKSGVISGGASDLKAKA FQKSGVISGGASDLKAKARRWDEKAVDKLK K S G L K A 1 0 0 1 0 0 0 3 0 1 1 1 0 0 0 3 0 0 0 1 0 0 12 0 1089.5666 Q14683;G8JLG1 Q14683 649 660 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00048458 77.379 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.9668 0.82779 27.759 6 Median 1.2451 1.179 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57368 0.61231 NaN 1 0 Median 1.3015 1.174 NaN 1 0 Median 0.69921 0.73293 NaN 1 0 Median 0.9668 0.8104 20.215 2 0 Median 75639000 43497000 32142000 2376400 1076300 1300100 0 0 0 14682000 9448800 5233600 4269300 1939100 2330200 36973000 21872000 15101000 17338000 9161000 8176900 30140 2889 31688 157273;157274;157275;157276;157277;157278 158143;158144;158145;158146;158147;158148;158149;158150;158151;158152 158146 10 SGVLDESTIATILR VLDIIKHIVAKGEHKSGVLDESTIATILRE KSGVLDESTIATILREVLEGLEYLHKNGQI K S G L R E 1 1 0 1 0 0 1 1 0 2 2 0 0 0 0 2 2 0 0 1 0 0 14 0 1473.8039 O95747;C9JIG9 O95747 115 128 OXSR1 Serine/threonine-protein kinase OSR1 yes no 2 3.8708E-08 112.15 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 1 2 1 1.2009 0.97227 12.158 9 Linear 1.1581 1.124 NaN 1 0 Median 1.1764 0.9739 9.2779 4 0 Linear 1.1505 1.1597 NaN 1 0 Median 1.0266 0.90374 10.336 2 0 Median NaN NaN NaN 0 0 Median 1.0633 0.86315 NaN 1 0 Median 24048000 11755000 12293000 5317400 2709800 2607600 8079300 4193100 3886200 9337600 4251400 5086200 96151 53001 43150 0 0 0 1217700 548140 669580 30141 1789 31689 157279;157280;157281;157282;157283;157284;157285;157286;157287 158153;158154;158155;158156;158157;158158 158156 6 SGVLDTLTK AADSKREQFRRYLEKSGVLDTLTKVLVALY RRYLEKSGVLDTLTKVLVALYEEPEKPNSA K S G T K V 0 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 2 0 0 1 0 0 9 0 932.51786 Q99417;A0A087WV05;A0A0D9SEI7 Q99417 21 29 MYCBP C-Myc-binding protein yes no 2 0.0053629 69.825 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.562 1.4051 62.306 4 Median 4.7993 4.3362 NaN 1 1 Median 1.7936 1.4874 NaN 1 0 Median 1.3603 1.3273 NaN 1 0 Median 1.3314 1.0738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47746000 12396000 35351000 35077000 7135800 27941000 3771500 1345100 2426400 3612900 1651400 1961500 5285200 2263600 3021700 0 0 0 0 0 0 30142 38 31690 157288;157289;157290;157291 158159;158160;158161 158161 3 SGVNSELVK NAMLKSICEVLDLERSGVNSELVKRILNFL VLDLERSGVNSELVKRILNFLMHPKPSGKP R S G V K R 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 9 0 931.49746 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 169 177 DEK Protein DEK yes no 2 0.0008049 96.948 By matching By MS/MS By MS/MS 1 3 4 1.0686 1.0242 10.019 8 Median 1.0496 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92625 0.93325 9.9285 3 0 Median 1.2206 1.0543 10.752 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51199000 25303000 25896000 481700 230540 251160 0 0 0 36580000 18565000 18015000 14137000 6507500 7629300 0 0 0 0 0 0 30143 1166 31691 157292;157293;157294;157295;157296;157297;157298;157299 158162;158163;158164;158165;158166;158167 158163 6 SGVNSELVKR NAMLKSICEVLDLERSGVNSELVKRILNFL LDLERSGVNSELVKRILNFLMHPKPSGKPL R S G K R I 0 1 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 10 1 1087.5986 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 169 178 DEK Protein DEK yes no 2 0.00057885 92.439 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.036 0.9932 29.54 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95237 0.96444 NaN 1 0 Median 1.135 1.0919 33.776 3 0 Median 0.56936 0.59107 NaN 1 0 Median 1.127 1.0228 NaN 1 0 Median 13601000 6651300 6950100 0 0 0 0 0 0 5752900 2853500 2899400 3575700 1638400 1937300 1867000 1056800 810200 2405800 1102500 1303300 30144 1166 31692 157300;157301;157302;157303;157304;157305 158168;158169;158170;158171;158172;158173;158174;158175;158176 158176 9 SGVPLTTGYRYK CQVGGNPKPHVYWKKSGVPLTTGYRYKVSY WKKSGVPLTTGYRYKVSYNKQTGECKLVIS K S G Y K V 0 1 0 0 0 0 0 2 0 0 1 1 0 0 1 1 2 0 2 1 0 0 12 1 1340.7089 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42 A0A0A0MRA3 1072 1083 TTN Titin yes no 2 0.011743 73.233 By matching By MS/MS 1 2 3.0361 3.1692 157.99 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0057 1.037 NaN 1 0 Median NaN NaN NaN 0 0 Median 9.1655 9.686 NaN 1 0 Median NaN NaN NaN 0 0 Median 25650000 1867500 23783000 0 0 0 0 0 0 2974300 1545900 1428500 0 0 0 22676000 321650 22354000 0 0 0 30145 155 31693 157306;157307;157308 158177;158178 158177 2 SGVPVLAVSLALEGK EVAEMLRDLNLGEMKSGVPVLAVSLALEGK SGVPVLAVSLALEGKASHREMTSKLLSDLC K S G G K A 2 0 0 0 0 0 1 2 0 0 3 1 0 0 1 2 0 0 0 3 0 0 15 0 1438.8395 Q53EL6;Q5VZS7 Q53EL6 198 212 PDCD4 Programmed cell death protein 4 yes no 2 0.00073906 46.592 By MS/MS By matching 1 1 1.8251 1.6936 45.288 2 Median NaN NaN NaN 0 0 Median 1.4328 1.2295 NaN 1 0 Median 2.3248 2.3328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2946500 1109800 1836700 0 0 0 2244900 934530 1310400 701560 175290 526270 0 0 0 0 0 0 0 0 0 30146 3026 31694 157309;157310 158179 158179 1 SGVSITIDDPVR TLGDTLTRRSISQQKSGVSITIDDPVRTAQ QQKSGVSITIDDPVRTAQVPSPPRGKISNI K S G V R T 0 1 0 2 0 0 0 1 0 2 0 0 0 0 1 2 1 0 0 2 0 0 12 0 1257.6565 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 929 940 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 3.7061E-06 107.21 By MS/MS By MS/MS 2 1 0.85501 0.86553 9.3984 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84673 0.86264 0.47354 2 0 Median 0.90273 0.73312 NaN 1 1 Median 33170000 17138000 16032000 0 0 0 0 0 0 0 0 0 0 0 0 30413000 15812000 14602000 2757000 1326300 1430700 30147 4560 31695 157311;157312;157313 158180;158181;158182 158180 3 SGVSLAALK VSELITKAVAASKERSGVSLAALKKALAAA AASKERSGVSLAALKKALAAAGYDVEKNNS R S G L K K 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 844.50182 P10412;P16402;P16403 P16402 56 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 1;2 0.00096009 88.358 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 8 10 11 1.2396 1.0597 22.989 35 Median 1.2875 1.2484 NaN 1 0 Median 1.3863 1.1641 9.1216 2 0 Median 0.88023 0.84904 33.508 3 0 Median 1.5191 1.2643 28.459 8 1 Median 0.89834 0.88943 4.3574 10 0 Median 1.2852 1.0665 10.044 11 0 Median 2172200000 1045000000 1127300000 3246100 1425800 1820400 17557000 7303600 10253000 140460000 74013000 66445000 37486000 14680000 22806000 1252900000 636400000 616550000 720550000 311130000 409420000 30148 2028;1937;2029 31696 157314;157315;157316;157317;157318;157319;157320;157321;157322;157323;157324;157325;157326;157327;157328;157329;157330;157331;157332;157333;157334;157335;157336;157337;157338;157339;157340;157341;157342;157343;157344;157345;157346;157347;157348 158183;158184;158185;158186;158187;158188;158189;158190;158191;158192;158193;158194;158195;158196;158197;158198;158199;158200;158201;158202;158203;158204;158205;158206;158207;158208;158209;158210;158211;158212;158213;158214;158215;158216;158217;158218 158191 35 SGVSLAALKK VSELITKAVAASKERSGVSLAALKKALAAA ASKERSGVSLAALKKALAAAGYDVEKNNSR R S G K K A 2 0 0 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 10 1 972.59678 P10412;P16402;P16403 P16402 56 65 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.00048079 117.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 10 7 8 7 1.1319 1.096 32.828 40 Median 1.0541 1.1734 22.636 3 0 Plateau 2.4018 1.9988 23.721 5 0 Median 0.86841 0.84097 15.885 10 0 Median 1.5341 1.3818 19.919 7 0 Median 0.89948 0.9844 17.394 8 0 Median 1.3717 1.2085 10.425 7 0 Median 4253000000 1920100000 2333000000 51250000 22810000 28439000 42905000 17385000 25520000 140110000 73853000 66256000 235910000 91845000 144070000 2325100000 1123100000 1202100000 1457700000 591100000 866630000 30149 2028;1937;2029 31697 157349;157350;157351;157352;157353;157354;157355;157356;157357;157358;157359;157360;157361;157362;157363;157364;157365;157366;157367;157368;157369;157370;157371;157372;157373;157374;157375;157376;157377;157378;157379;157380;157381;157382;157383;157384;157385;157386;157387;157388 158219;158220;158221;158222;158223;158224;158225;158226;158227;158228;158229;158230;158231;158232;158233;158234;158235;158236;158237;158238;158239;158240;158241;158242;158243;158244;158245;158246;158247;158248;158249;158250;158251;158252;158253;158254;158255;158256;158257;158258;158259;158260;158261;158262;158263;158264;158265;158266;158267;158268;158269;158270;158271;158272;158273;158274;158275;158276;158277;158278;158279;158280 158260 62 SGVSLAALKKALAAAGYDVEK VSELITKAVAASKERSGVSLAALKKALAAA ALKKALAAAGYDVEKNNSRIKLGLKSLVSK R S G E K N 6 0 0 1 0 0 1 2 0 0 3 3 0 0 0 2 0 0 1 2 0 0 21 2 2061.147 P10412;P16402;P16403 P16402 56 76 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 0.046907 11.3 By matching By MS/MS 1 1 1.0484 1.0159 7.4793 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97897 1.0711 NaN 1 0 Median 1.1228 0.96361 NaN 1 0 Median 11322000 5125700 6196200 0 0 0 0 0 0 0 0 0 0 0 0 2096900 1011600 1085300 9225000 4114100 5110900 30150 2028;1937;2029 31698 157389;157390 158281 158281 1 SGVYQHVTGEMMGGHAIR ______________________________ YQHVTGEMMGGHAIRILGWGVENGTPYWLV - S G I R I 1 1 0 0 0 1 1 4 2 1 0 0 2 0 0 1 1 0 1 2 0 0 18 0 1928.8985 R4GMQ5;P07858 R4GMQ5 1 18 CTSB Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain yes no 3;4 1.2729E-14 115.34 By MS/MS By MS/MS By matching By matching By matching 6 2 2 1 1 1.1271 1.0877 30.105 12 Median 1.0362 0.98216 39.455 6 0 Median 1.7468 1.4773 13.554 2 0 Median 1.0311 0.97163 13.852 2 0 Median 1.3591 1.1829 NaN 1 0 Median 1.055 1.1041 NaN 1 0 Median NaN NaN NaN 0 0 Median 155390000 74238000 81148000 136880000 66789000 70093000 10943000 3772800 7170300 4152900 1909400 2243500 1481500 813390 668140 1926500 953760 972740 0 0 0 30151 1893 31699;31700 157391;157392;157393;157394;157395;157396;157397;157398;157399;157400;157401;157402 158282;158283;158284;158285;158286;158287;158288;158289;158290;158291 158286 662;663 10 SGWADERGGEGDGR ______________________________ MSGWADERGGEGDGRIYVGNLPTDVREKDL M S G G R I 1 2 0 2 0 0 2 5 0 0 0 0 0 0 0 1 0 1 0 0 0 0 14 1 1447.6076 Q13242;S4R3G0 Q13242 2 15 SRSF9 Serine/arginine-rich splicing factor 9 yes no 2 0.00059808 49.5 By MS/MS 1 0.86809 0.94145 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86809 0.94145 NaN 1 0 Median NaN NaN NaN 0 0 Median 4656100 2318000 2338100 0 0 0 0 0 0 0 0 0 0 0 0 4656100 2318000 2338100 0 0 0 30152 2799 31701 157403 158292;158293 158293 2 SGWTSASSWAVR RKSEQEFSFDTPADRSGWTSASSWAVRKTL ADRSGWTSASSWAVRKTLPADVQNYYSRRG R S G V R K 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 4 1 2 0 1 0 0 12 0 1293.6102 F8VXG7;Q99590 F8VXG7 948 959 SCAF11 Protein SCAF11 yes no 2 0.0049172 42.336 By MS/MS By matching 1 1 0.93147 0.89702 5.4369 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82151 0.86319 NaN 1 0 Median 1.0561 0.93218 NaN 1 0 Median 3927500 2018300 1909300 0 0 0 0 0 0 0 0 0 0 0 0 3708800 1915200 1793600 218740 103040 115700 30153 1072 31702 157404;157405 158294;158295 158295 2 SGYAFVDYPDQNWAIR FGDRKLPLAGQVLLKSGYAFVDYPDQNWAI GYAFVDYPDQNWAIRAIETLSGKVELHGKI K S G I R A 2 1 1 2 0 1 0 1 0 1 0 0 0 1 1 1 0 1 2 1 0 0 16 0 1900.8744 F8W930;Q9Y6M1 F8W930 38 53 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.00013645 57.836 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 0.91253 0.85357 10.018 5 Median 0.8083 0.78359 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80196 0.85357 NaN 1 0 Median 1.0254 0.87598 NaN 1 0 Median 0.94885 1.0139 NaN 1 1 Median 0.91253 0.80695 NaN 1 0 Median 10142000 5412900 4729000 5490300 2945800 2544600 0 0 0 2911200 1583200 1327900 296420 147810 148610 1295400 658050 637360 148560 78054 70508 30154 1088 31703 157406;157407;157408;157409;157410 158296;158297;158298;158299;158300 158296 5 SGYAIQADEEQLR HRTLQVLIKQEIQRKSGYAIQADEEQLRVQ RKSGYAIQADEEQLRVQLDTIQGELNAPTQ K S G L R V 2 1 0 1 0 2 2 1 0 1 1 0 0 0 0 1 0 0 1 0 0 0 13 0 1478.7001 Q7Z3B4 Q7Z3B4 399 411 NUP54 Nucleoporin p54 yes yes 2 0.00012318 84.17 By MS/MS By matching 1 1 1.1969 1.0256 2.4824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1759 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2184 1.0438 NaN 1 0 Median 5971700 2395400 3576300 0 0 0 0 0 0 0 0 0 4951700 1946500 3005200 0 0 0 1020100 448930 571130 30155 3239 31704 157411;157412 158301 158301 1 SGYFALGNEK NKNISHVHTMDFSPRSGYFALGNEKGKALM DFSPRSGYFALGNEKGKALMYRLHHYSDF_ R S G E K G 1 0 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 0 1084.5189 Q9Y5J1 Q9Y5J1 533 542 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 0.016038 55.064 By MS/MS 1 1.2069 1.1502 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2069 1.1502 NaN 1 1 Median NaN NaN NaN 0 0 Median 7336500 3248500 4087900 0 0 0 0 0 0 0 0 0 0 0 0 7336500 3248500 4087900 0 0 0 30156 4458 31705 157413 158302 158302 1 SGYGFNEPEQSR SYDSRSSLGGRDLYRSGYGFNEPEQSRFGG LYRSGYGFNEPEQSRFGGSYGGRFESSYRN R S G S R F 0 1 1 0 0 1 2 2 0 0 0 0 0 1 1 2 0 0 1 0 0 0 12 0 1369.5899 Q5BKZ1 Q5BKZ1 91 102 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 4.3444E-06 104.22 By MS/MS By matching 1 2 1.1319 0.99569 15.071 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97607 0.99569 NaN 1 0 Median 1.2735 1.0658 20.576 2 0 Median 13640000 7032900 6607100 0 0 0 0 0 0 0 0 0 0 0 0 10290000 5371200 4918600 3350200 1661700 1688500 30157 3042 31706 157414;157415;157416 158303 158303 1 SGYHQSASEHGLVVIAPDTSPR WLSGLTCTEQNFISKSGYHQSASEHGLVVI SEHGLVVIAPDTSPRGCNIKGEDESWDFGT K S G P R G 2 1 0 1 0 1 1 2 2 1 1 0 0 0 2 4 1 0 1 2 0 0 22 0 2307.1244 P10768;X6RA14;H7BZT7 P10768 65 86 ESD S-formylglutathione hydrolase yes no 3;4 4.2706E-26 135.33 By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 0.82723 0.75467 13.305 9 Median 0.79673 0.75467 2.9791 3 0 Median 0.86223 0.7233 11.25 4 0 Median 0.84458 0.83102 NaN 1 0 Median 1.2389 1.0393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206400000 108160000 98240000 163860000 86364000 77500000 34600000 17190000 17410000 7222000 4232200 2989800 717010 377880 339130 0 0 0 0 0 0 30158 1946 31707 157417;157418;157419;157420;157421;157422;157423;157424;157425 158304;158305;158306;158307;158308;158309;158310;158311;158312;158313;158314;158315;158316 158307 11 SGYIESVQHILK SPQETLKERDENLLKSGYIESVQHILKDVS LLKSGYIESVQHILKDVSGVRALESAVQHE K S G L K D 0 0 0 0 0 1 1 1 1 2 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1372.7351 Q9BQP7;Q5QPE8 Q9BQP7 203 214 MGME1 Mitochondrial genome maintenance exonuclease 1 yes no 3 0.038328 18.332 By MS/MS By matching By matching By matching 1 1 2 1 0.87956 0.90644 37.85 5 Median 0.87956 0.83505 NaN 1 0 Median 2.1877 1.8489 NaN 1 0 Median 0.74679 0.78263 20.77 2 0 Median 1.2015 1.0064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9817200 4837100 4980100 5580200 2679500 2900700 235960 72227 163730 3866900 2012400 1854500 134120 72923 61199 0 0 0 0 0 0 30159 3790 31708 157426;157427;157428;157429;157430 158317 158317 1 SGYLAGDKLLPQR AVQSKYGDFNKEVHKSGYLAGDKLLPQRVL HKSGYLAGDKLLPQRVLEQHKLNKDQWEER K S G Q R V 1 1 0 1 0 1 0 2 0 0 3 1 0 0 1 1 0 0 1 0 0 0 13 1 1416.7725 P26038 P26038 144 156 MSN Moesin yes yes 3 0.04705 27.005 By MS/MS 1 0.9048 0.92771 NaN 1 Median 0.9048 0.92771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4181200 2131500 2049700 4181200 2131500 2049700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30160 2139 31709 157431 158318 158318 1 SGYLLPDTK VLDLAVVLFETATLRSGYLLPDTKAYGDRI ETATLRSGYLLPDTKAYGDRIERMLRLSLN R S G T K A 0 0 0 1 0 0 0 1 0 0 2 1 0 0 1 1 1 0 1 0 0 0 9 0 992.51786 P14625;H0YIV0 P14625 725 733 HSP90B1 Endoplasmin yes no 2 0.0017223 78.377 By MS/MS By MS/MS 2 1 1.1538 1.0544 45.252 3 Plateau 0.70271 0.6516 50.15 2 1 Median 1.2095 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 150430000 74532000 75894000 71091000 40057000 31034000 79335000 34475000 44861000 0 0 0 0 0 0 0 0 0 0 0 0 30161 2006 31710 157432;157433;157434 158319;158320;158321;158322;158323 158320 5 SGYLSSER AVQAKFGDYNKEVHKSGYLSSERLIPQRVM YNKEVHKSGYLSSERLIPQRVMDQHKLTRD K S G E R L 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 3 0 0 1 0 0 0 8 0 897.41921 P15311;E7EQR4 P15311 144 151 EZR Ezrin yes no 2 0.0042854 82.452 By MS/MS By MS/MS By matching 2 1 1 1.2615 1.2179 15.12 4 Linear NaN NaN NaN 0 0 Median 1.2669 1.096 6.394 2 0 Median 1.3148 1.3525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1438 0.94718 NaN 1 0 Median 19067000 8417100 10649000 0 0 0 11857000 5275800 6581100 6851400 2981000 3870300 0 0 0 0 0 0 358340 160310 198030 30162 879 31711 157435;157436;157437;157438 158324;158325;158326;158327 158325 4 SGYPDIGFPLFPLSK PKKRRKSYRSFLPEKSGYPDIGFPLFPLSK SGYPDIGFPLFPLSKGFIKSIRGVLTQFRA K S G S K G 0 0 0 1 0 0 0 2 0 1 2 1 0 2 3 2 0 0 1 0 0 0 15 0 1636.8501 Q9C0C9;K7ES11 Q9C0C9 1249 1263 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.0011936 42.041 By MS/MS By matching 2 1 0.87944 0.85018 17.613 3 Median 0.92941 0.92051 11.239 2 0 Median 0.79577 0.70112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11003000 5932200 5070900 9264200 4956800 4307400 1739000 975450 763530 0 0 0 0 0 0 0 0 0 0 0 0 30163 3904 31712 157439;157440;157441 158328 158328 1 SGYQDMPEYENFR QILIYHGETIAQWRKSGYQDMPEYENFRHL RKSGYQDMPEYENFRHLLQAPVDDAQEILH K S G F R H 0 1 1 1 0 1 2 1 0 0 0 0 1 1 1 1 0 0 2 0 0 0 13 0 1634.6671 F5H365;Q15436 F5H365 641 653 SEC23A Protein transport protein Sec23A yes no 2 5.735E-07 106.29 By MS/MS By matching By matching 1 1 1 1.0317 0.93755 9.4903 3 Median 0.83488 0.79719 NaN 1 0 Median 1.0317 0.93755 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1154 0.94159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6708600 3539000 3169700 5564100 2954300 2609800 800400 388580 411830 0 0 0 344140 196060 148080 0 0 0 0 0 0 30164 1029 31713 157442;157443;157444 158329 158329 1 SGYSEVNLSK DYRKLKNTAEQFLSRSGYSEVNLSKLFAGC QFLSRSGYSEVNLSKLFAGCAVKS______ R S G S K L 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 3 0 0 1 1 0 0 10 0 1082.5244 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1443 1452 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.0036436 56.013 By MS/MS 1 1.2085 1.0735 NaN 1 Median NaN NaN NaN 0 0 Median 1.2085 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3111400 1417700 1693700 0 0 0 3111400 1417700 1693700 0 0 0 0 0 0 0 0 0 0 0 0 30165 26 31714 157445 158330;158331 158331 2 SGYWASHLAGR FCDSRREMDGYRFWKSGYWASHLAGRKYHI RFWKSGYWASHLAGRKYHISALYVVDLKKF K S G G R K 2 1 0 0 0 0 0 2 1 0 1 0 0 0 0 2 0 1 1 0 0 0 11 0 1203.5785 Q9NYU2 Q9NYU2 1400 1410 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2;3 2.0098E-05 111.61 By MS/MS By MS/MS 2 3 1.244 1.1201 36.657 4 Median 1.1637 1.1036 NaN 1 0 Median 1.3299 1.1368 44.256 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16328000 7301200 9027200 5772000 2529000 3243100 10556000 4772200 5784100 0 0 0 0 0 0 0 0 0 0 0 0 30166 4179 31715 157446;157447;157448;157449;157450 158332;158333;158334 158333 3 SHAEIAEQAKHEAEIETR SQAADLANKGPKWEKSHAEIAEQAKHEAEI EIAEQAKHEAEIETRIAELRKEGFWSLKRL K S H T R I 4 1 0 0 0 1 5 0 2 2 0 1 0 0 0 1 1 0 0 0 0 0 18 1 2047.9923 Q6ZRS2;A0A0C4DFX4 Q6ZRS2 92 109 SRCAP Helicase SRCAP yes no 4 2.0045E-05 48.907 By MS/MS 1 1.0382 1.201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0382 1.201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3529700 1693000 1836700 0 0 0 0 0 0 3529700 1693000 1836700 0 0 0 0 0 0 0 0 0 30167 3199 31716 157451 158335 158335 1 SHAGYQTI LVLIVLIAYLVGRKRSHAGYQTI_______ YLVGRKRSHAGYQTI_______________ R S H T I - 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 8 0 875.41373 P11279 P11279 410 417 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 2 0.0022434 92.191 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11841000 0 0 0 0 0 11841000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30168 1961 31717 157452;157453 158336;158337 158336 2 SHASGTYLIR FAGNMERQQTDNLLKSHASGTYLIRERPAE DNLLKSHASGTYLIRERPAEAERFAISIKF K S H I R E 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 2 1 0 1 0 0 0 10 0 1103.5724 P52735 P52735 689 698 VAV2 Guanine nucleotide exchange factor VAV2 yes yes 2 0.0061836 49.423 By MS/MS 1 1.6536 1.4397 NaN 1 Median NaN NaN NaN 0 0 Median 1.6536 1.4397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1947200 766270 1181000 0 0 0 1947200 766270 1181000 0 0 0 0 0 0 0 0 0 0 0 0 30169 2455 31718 157454 158338 158338 1 SHAVACVNQFIISR PKFLQFFKHSSPKIRSHAVACVNQFIISRT RSHAVACVNQFIISRTQALMLHIDSFIENL R S H S R T 2 1 1 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 2 0 0 14 0 1600.8144 Q92973 Q92973 200 213 TNPO1 Transportin-1 yes yes 3 0.061221 11.105 By MS/MS 2 1.2712 1.1016 NaN 1 Median NaN NaN NaN 0 0 Median 1.2712 1.1016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3276300 1517500 1758800 0 0 0 3276300 1517500 1758800 0 0 0 0 0 0 0 0 0 0 0 0 30170 3570 31719 157455;157456 158339 158339 1 SHAVFQIILR CRTSGQTSANAHSSRSHAVFQIILRRKGKL AHSSRSHAVFQIILRRKGKLHGKFSLIDLA R S H L R R 1 1 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 0 1 0 0 10 0 1182.6873 O00139 O00139 435 444 KIF2A Kinesin-like protein KIF2A yes yes 2 0.034259 32.841 By matching By MS/MS 1 1 1.3403 1.2859 19.473 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3789 1.4757 NaN 1 0 Median 1.3028 1.1205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2829500 1103800 1725600 0 0 0 0 0 0 1769500 680900 1088600 1060000 422910 637060 0 0 0 0 0 0 30171 1440 31720 157457;157458 158340 158340 1 SHCFVTYSTVEEAVATR TGTLVEEAFWIDKIKSHCFVTYSTVEEAVA CFVTYSTVEEAVATRTALHGVKWPQSNPKF K S H T R T 2 1 0 0 1 0 2 0 1 0 0 0 0 1 0 2 3 0 1 3 0 0 17 0 1955.9047 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 992 1008 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 0.00010711 44.005 By MS/MS 1 0.64557 0.68211 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64557 0.68211 NaN 1 0 Median NaN NaN NaN 0 0 Median 3410100 2226100 1183900 0 0 0 0 0 0 0 0 0 0 0 0 3410100 2226100 1183900 0 0 0 30172 4560 31721 157459 158341 158341 1 SHDPEEAIRHDVIVSIVTAAK HPDLAKDLTEYLKVRSHDPEEAIRHDVIVS AIRHDVIVSIVTAAKKDILLVNDHLLNFVR R S H A K K 3 1 0 2 0 0 2 0 2 3 0 1 0 0 1 2 1 0 0 3 0 0 21 1 2286.1968 Q9NTI5 Q9NTI5 359 379 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.068081 15.725 By MS/MS 1 0.859 0.9728 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.859 0.9728 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4509700 2319900 2189800 0 0 0 0 0 0 4509700 2319900 2189800 0 0 0 0 0 0 0 0 0 30173 4107 31722 157460 158342 158342 1 SHEAEVLK EEIQKKLEAAEERRKSHEAEVLKQLAEKRE AAEERRKSHEAEVLKQLAEKREHEKEVLQK K S H L K Q 1 0 0 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 8 0 911.47125 A2A2D0;P16949 A2A2D0 63 70 STMN1 Stathmin yes no 2 0.0038087 85.212 By MS/MS By MS/MS 1 1 1.1286 1.0194 6.2251 2 Median 1.0355 0.97553 NaN 1 0 Median 1.2299 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2518100 1169200 1348900 876400 415440 460950 1641700 753780 887910 0 0 0 0 0 0 0 0 0 0 0 0 30174 496 31723 157461;157462 158343;158344;158345;158346;158347;158348;158349;158350 158349 8 SHEGETAYIR DMTYAVRKLDNTKFRSHEGETAYIRVKVDG NTKFRSHEGETAYIRVKVDGPRSPSYGRSR R S H I R V 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1161.5415 J3KTL2;Q07955;J3KSR8 J3KTL2 182 191 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.0007807 71.379 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 5 1.1467 1.0364 14.592 12 Median 1.1078 1.0662 NaN 1 0 Median 1.2367 1.0435 4.9732 2 0 Median 1.1155 1.0861 NaN 1 0 Median 1.2044 1.0047 NaN 1 0 Median 1.0474 1.0558 7.083 2 0 Median 1.2157 0.98164 22.948 5 0 Median 68281000 31126000 37155000 2724600 1262800 1461800 5998500 2578900 3419700 13958000 6878800 7079100 8468800 3326900 5142000 24665000 11724000 12941000 12467000 5355000 7111600 30175 1337 31724 157463;157464;157465;157466;157467;157468;157469;157470;157471;157472;157473;157474 158351;158352;158353;158354;158355;158356;158357;158358;158359;158360;158361;158362;158363;158364;158365;158366;158367 158355 17 SHEGETSYIR DMEYALRKLDDTKFRSHEGETSYIRVYPER DTKFRSHEGETSYIRVYPERSTSYGYSRSR R S H I R V 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1177.5364 Q13242 Q13242 172 181 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.0019589 61.962 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.4067 1.2875 11.462 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1897 1.1338 NaN 1 0 Median 1.7099 1.4044 NaN 1 0 Median 1.2681 1.3467 13.666 3 0 Median 1.4399 1.2107 8.6982 2 0 Median 19916000 8763300 11152000 0 0 0 0 0 0 3447100 1604300 1842800 431000 176050 254950 12858000 5732500 7125400 3179800 1250400 1929400 30176 2799 31725 157475;157476;157477;157478;157479;157480;157481 158368;158369;158370;158371;158372;158373 158369 6 SHEGTSGEWIWESLFHPPR VDDNEVRDLISDRNKSHEGTSGEWIWESLF TSGEWIWESLFHPPRKLGINDIEGQRVLQI K S H P R K 0 1 0 0 0 0 3 2 2 1 1 0 0 1 2 3 1 2 0 0 0 0 19 0 2251.0447 Q68CP9;F8WCU9 Q68CP9 256 274 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 0.076117 5.0925 By MS/MS 1 0.54599 0.60887 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54599 0.60887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 718600 488710 229890 0 0 0 0 0 0 718600 488710 229890 0 0 0 0 0 0 0 0 0 30177 3122 31726 157482 158374 158374 1 SHFEQWGTLTDCVVMR FIGGLSFETTDESLRSHFEQWGTLTDCVVM HFEQWGTLTDCVVMRDPNTKRSRGFGFVTY R S H M R D 0 1 0 1 1 1 1 1 1 0 1 0 1 1 0 1 2 1 0 2 0 0 16 0 1964.8873 P09651;F8W6I7;F8VZ49;Q32P51;F8W646 P09651 32 47 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 1.1187E-07 79.741 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 3 2 1.1407 1.044 8.6434 11 Median NaN NaN NaN 0 0 Median 1.2156 1.0226 2.9219 2 0 Median 1.0569 1.0285 10.966 2 0 Median 1.2381 1.0481 12.603 2 0 Median 1.0899 1.1697 8.0298 3 0 Median 1.1603 1.0054 3.976 2 0 Median 52168000 25004000 27164000 0 0 0 8427900 3920800 4507100 35107000 16926000 18181000 352140 175040 177100 6775000 3361600 3413400 1506400 620130 886230 30178 1919 31727;31728 157483;157484;157485;157486;157487;157488;157489;157490;157491;157492;157493;157494 158375;158376;158377;158378;158379;158380;158381;158382;158383;158384 158380 695 10 SHFEQWGTLTDCVVMRDPNTK FIGGLSFETTDESLRSHFEQWGTLTDCVVM GTLTDCVVMRDPNTKRSRGFGFVTYATVEE R S H T K R 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 3 1 0 2 0 0 21 1 2520.1526 P09651;F8W6I7;F8VZ49;Q32P51;F8W646 P09651 32 52 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 3 9.1928E-05 36.523 By MS/MS 1 1.1162 1.2167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1162 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3066800 1272800 1794000 0 0 0 0 0 0 3066800 1272800 1794000 0 0 0 0 0 0 0 0 0 30179 1919 31729 157495 158385 158385 1 SHFEQWGTLTDCVVMRDPNTKR FIGGLSFETTDESLRSHFEQWGTLTDCVVM TLTDCVVMRDPNTKRSRGFGFVTYATVEEV R S H K R S 0 2 1 2 1 1 1 1 1 0 1 1 1 1 1 1 3 1 0 2 0 0 22 2 2676.2537 P09651;F8W6I7;F8VZ49;Q32P51;F8W646 P09651 32 53 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 4 4.8104E-07 45.069 By matching By MS/MS 1 2 1.019 1.1863 6.4744 3 Median NaN NaN NaN 0 0 Median 1.019 1.1955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98376 1.1239 7.6426 2 0 Median NaN NaN NaN 0 0 Median 17344000 9094600 8249000 0 0 0 540000 286770 253220 0 0 0 0 0 0 16804000 8807800 7995800 0 0 0 30180 1919 31730 157496;157497;157498 158386;158387;158388 158386 3 SHFQQSLDVR TSNETMQAVEDGDSKSHFQQSLDVRHVTSD DGDSKSHFQQSLDVRHVTSDFNSMTATVGK K S H V R H 0 1 0 1 0 2 0 0 1 0 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1215.5996 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 1017 1026 QSER1 Glutamine and serine-rich protein 1 yes no 2;3 0.00038663 79.474 By MS/MS By matching 2 1 0.99777 1.0612 16.943 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0889 1.2096 18.512 2 0 Median NaN NaN NaN 0 0 Median 0.99777 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median 6475500 2994800 3480700 0 0 0 0 0 0 4732500 2155200 2577300 0 0 0 1743000 839600 903390 0 0 0 30181 418 31731 157499;157500;157501 158389;158390;158391 158389 2 SHFTRPAGVSSAVIPVLR DFLPLIHVYLQCRTRSHFTRPAGVSSAVIP TRPAGVSSAVIPVLRKTLWRQLQSRLLSTD R S H L R K 2 2 0 0 0 0 0 1 1 1 1 0 0 1 2 3 1 0 0 3 0 0 18 1 1893.0585 O60287 O60287 1282 1299 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 0.00010613 39.91 By MS/MS 1 0.74485 0.94092 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74485 0.94092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5588900 2766400 2822500 0 0 0 0 0 0 5588900 2766400 2822500 0 0 0 0 0 0 0 0 0 30182 1610 31732 157502 158392;158393 158393 2 SHFVAASLSNQK DRLTAMKAAFQSQYKSHFVAASLSNQKAGS QYKSHFVAASLSNQKAGSSAAGASGWTSAG K S H Q K A 2 0 1 0 0 1 0 0 1 0 1 1 0 1 0 3 0 0 0 1 0 0 12 0 1287.6571 Q86XP3;A0A0A0MSJ0 Q86XP3 709 720 DDX42 ATP-dependent RNA helicase DDX42 yes no 2;3 0.00012042 86.624 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 4 2 1 2 0.90294 0.97839 16.88 10 Median 0.60946 0.61836 NaN 1 0 Median 0.86048 0.76463 NaN 1 1 Median 0.87681 0.93762 6.164 4 0 Median 1.2066 1.0342 0.24311 2 1 Median 1.0005 1.0346 NaN 1 0 Median 1.2405 1.0254 NaN 1 0 Median 25498000 13000000 12498000 549640 296910 252730 1519300 896770 622540 12018000 6156700 5860800 6215800 3032800 3183100 3723200 1909200 1814000 1472300 707380 764960 30183 3302 31733 157503;157504;157505;157506;157507;157508;157509;157510;157511;157512;157513 158394;158395;158396;158397;158398;158399;158400;158401;158402;158403;158404 158400 11 SHGFAAEFK YLNTNPVGGLLEYARSHGFAAEFKLVDQSG LLEYARSHGFAAEFKLVDQSGPPHEPKFVY R S H F K L 2 0 0 0 0 0 1 1 1 0 0 1 0 2 0 1 0 0 0 0 0 0 9 0 992.47158 P55265;A0A3B3IRQ9;A0A3B3ISX1 P55265 737 745 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.00083362 95.358 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 1.3743 1.1697 11.258 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1097 1.2237 NaN 1 0 Median 1.3947 1.1697 NaN 1 0 Median 0.99783 1.0324 6.9223 2 0 Median 1.3982 1.1982 11.809 3 0 Median 38221000 17699000 20522000 0 0 0 0 0 0 4272700 1906100 2366600 1179000 546140 632870 17272000 8785900 8485900 15498000 6461400 9036200 30184 2498 31734 157514;157515;157516;157517;157518;157519;157520 158405;158406;158407;158408;158409;158410 158407 6 SHGVLGLYR PRYRGIGDCVRQTVRSHGVLGLYRGLSSLL VRQTVRSHGVLGLYRGLSSLLYGSIPKAAV R S H Y R G 0 1 0 0 0 0 0 2 1 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1000.5454 P53007 P53007 77 85 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.0005553 114.78 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.6324 1.3584 24.853 5 Median 0.9466 0.88467 NaN 1 0 Median 1.7299 1.4519 9.4102 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96929 0.96371 NaN 1 0 Median 1.7292 1.4038 NaN 1 0 Median 53276000 24235000 29041000 37627000 17840000 19787000 9579900 3600800 5979100 0 0 0 0 0 0 4573800 2254200 2319600 1494800 539840 954990 30185 2464 31735 157521;157522;157523;157524;157525 158411;158412;158413;158414;158415;158416;158417 158412 7 SHHAPMSPGSSGGGGQPLAR AAAAAAAASGGAQQRSHHAPMSPGSSGGGG MSPGSSGGGGQPLARTPQPSSPMDQMGKMR R S H A R T 2 1 0 0 0 1 0 5 2 0 1 0 1 0 3 4 0 0 0 0 0 0 20 0 1886.8806 O14497 O14497 357 376 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 0.00038312 31.111 By matching By MS/MS 1 1 0.58071 0.57263 16.882 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4573 0.50819 NaN 1 0 Median 0.73742 0.64523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1748500 1134900 613650 0 0 0 0 0 0 1304000 897650 406350 444500 237200 207300 0 0 0 0 0 0 30186 1480 31736 157526;157527 158418 158418 1 SHIEIIR YVSRLNAIYQNNLTKSHIEIIRGHAAFTSD IYQNNLTKSHIEIIRGHAAFTSDPKPTIEV K S H I R G 0 1 0 0 0 0 1 0 1 3 0 0 0 0 0 1 0 0 0 0 0 0 7 0 866.4974 P00390 P00390 165 171 GSR Glutathione reductase, mitochondrial yes yes 2 0.0002301 146.94 By MS/MS By MS/MS 1 1 1.1175 1.0194 1.0576 2 Median 1.024 1.0118 NaN 1 0 Median 1.2196 1.0271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12704000 5831800 6872500 4322400 2084100 2238200 8381900 3747700 4634200 0 0 0 0 0 0 0 0 0 0 0 0 30187 1817 31737 157528;157529 158419;158420;158421;158422 158422 4 SHILEQHPHTLDLSPSEK VCGAEIRAPSADTARSHILEQHPHTLDLSP LEQHPHTLDLSPSEKSNILEAWSEGVALLQ R S H E K S 0 0 0 1 0 1 2 0 3 1 3 1 0 0 2 3 1 0 0 0 0 0 18 0 2067.0385 Q9BUA3 Q9BUA3 108 125 C11orf84 Uncharacterized protein C11orf84 yes yes 3;4 0.00020837 49.425 By MS/MS By MS/MS 2 1 0.7285 0.71718 24.037 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62499 0.6101 22.868 2 1 Median 0.9675 0.8302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20350000 13599000 6751700 0 0 0 0 0 0 16674000 11829000 4845900 3675800 1770100 1905700 0 0 0 0 0 0 30188 3836 31738 157530;157531;157532 158423;158424 158423 2 SHIPLAFDPTSIPR YEHLLRGVSGVDLYRSHIPLAFDPTSIPRG RSHIPLAFDPTSIPRGIPLDAAAAYYLPRH R S H P R G 1 1 0 1 0 0 0 0 1 2 1 0 0 1 3 2 1 0 0 0 0 0 14 0 1549.8253 C9J7T7;A0A384DVL6;C9JE98;C9J0Q5;Q9Y618 C9J7T7 1174 1187 NCOR2 Nuclear receptor corepressor 2 yes no 3 0.025976 29.981 By MS/MS 1 1.6407 1.7835 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6407 1.7835 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3755800 1325800 2430000 0 0 0 0 0 0 3755800 1325800 2430000 0 0 0 0 0 0 0 0 0 30189 409 31739 157533 158425 158425 1 SHISDQSPLSSK CGREKSGIQPLCPERSHISDQSPLSSKRKA PERSHISDQSPLSSKRKALEESESSQLISP R S H S K R 0 0 0 1 0 1 0 0 1 1 1 1 0 0 1 5 0 0 0 0 0 0 12 0 1284.631 P42166 P42166 345 356 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 0.0012241 55.567 By MS/MS By MS/MS By matching 3 2 1 0.96153 0.81194 2.3004 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77603 0.80135 0.94525 2 1 Median 0.96497 0.83732 0.60585 2 1 Median NaN NaN NaN 0 0 Median 0.97164 0.81194 NaN 1 0 Median 19908000 10929000 8978800 0 0 0 0 0 0 15077000 8511400 6565800 4381400 2199100 2182400 0 0 0 448920 218250 230670 30190 2306 31740 157534;157535;157536;157537;157538;157539 158426;158427;158428;158429;158430;158431 158426 6 SHLEVPLEENVNR DHQLREAPDTAEKAKSHLEVPLEENVNRRV AKSHLEVPLEENVNRRVLEEGSVEARTIED K S H N R R 0 1 2 0 0 0 3 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 13 0 1534.774 Q96CT7;M0R2F5 Q96CT7 122 134 CCDC124 Coiled-coil domain-containing protein 124 yes no 2;3 4.2022E-06 95.401 By MS/MS By MS/MS By matching 3 1 1 0.90514 0.8216 21.942 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94601 0.90258 12.369 3 1 Median 0.90514 0.75494 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71809 0.58269 NaN 1 0 Median 31169000 16490000 14679000 0 0 0 0 0 0 25951000 13576000 12375000 4092200 2283000 1809200 0 0 0 1126400 631370 495010 30191 3621 31741 157540;157541;157542;157543;157544 158432;158433;158434;158435 158432 4 SHLEVPLEENVNRR DHQLREAPDTAEKAKSHLEVPLEENVNRRV KSHLEVPLEENVNRRVLEEGSVEARTIEDA K S H R R V 0 2 2 0 0 0 3 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 14 1 1690.8751 Q96CT7;M0R2F5 Q96CT7 122 135 CCDC124 Coiled-coil domain-containing protein 124 yes no 3 5.8209E-09 107.14 By MS/MS By MS/MS By MS/MS 1 2 2 0.91095 0.85008 16.052 5 Median NaN NaN NaN 0 0 Median 0.75636 0.64235 NaN 1 0 Median 0.8906 0.92648 11.218 2 0 Median 0.92201 0.84281 1.2152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119390000 61963000 57427000 0 0 0 2574600 1493500 1081100 47602000 26108000 21494000 69213000 34362000 34852000 0 0 0 0 0 0 30192 3621 31742 157545;157546;157547;157548;157549 158436;158437;158438;158439;158440;158441;158442;158443;158444 158442 9 SHLFDGLDDDEPSLANGAFMPK TRVRPKALQTTGTAKSHLFDGLDDDEPSLA DDDEPSLANGAFMPKKSIKKLVLKNLNNSN K S H P K K 2 0 1 4 0 0 1 2 1 0 3 1 1 2 2 2 0 0 0 0 0 0 22 0 2375.074 P52948;A0A3B3ITD8;H0YEN4;H0YCR0 P52948 573 594 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 3 0.00017785 29.84 By MS/MS 1 0.71003 0.77994 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71003 0.77994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3422400 1852200 1570200 0 0 0 0 0 0 3422400 1852200 1570200 0 0 0 0 0 0 0 0 0 30193 2462 31743 157550 158445;158446;158447 158447 3 SHLFFTAGK FAHDDSVMYLQFVPKSHLFFTAGKDHKIKQ LQFVPKSHLFFTAGKDHKIKQWDADKFEHI K S H G K D 1 0 0 0 0 0 0 1 1 0 1 1 0 2 0 1 1 0 0 0 0 0 9 0 1006.5236 Q9UNX4 Q9UNX4 645 653 WDR3 WD repeat-containing protein 3 yes yes 2 0.0098224 48.794 By MS/MS 1 1.6915 1.8674 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6915 1.8674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4569800 1608000 2961900 0 0 0 0 0 0 4569800 1608000 2961900 0 0 0 0 0 0 0 0 0 30194 4351 31744 157551 158448 158448 1 SHLIQVER QSMQLEERAEQIRSKSHLIQVEREKMQMEL AEQIRSKSHLIQVEREKMQMELSHKRARVE K S H E R E 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 980.54033 Q9Y6D9;C9JJ38 Q9Y6D9 62 69 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.055228 50.127 By MS/MS 1 1.1335 0.99846 NaN 1 Median NaN NaN NaN 0 0 Median 1.1335 0.99846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1401900 637910 764030 0 0 0 1401900 637910 764030 0 0 0 0 0 0 0 0 0 0 0 0 30195 4490 31745 157552 158449 158449 1 SHLLDYVMTTLLFSDK FHGLWDSLVYDVEVKSHLLDYVMTTLLFSD HLLDYVMTTLLFSDKNVNSNLITWNRVVLL K S H D K N 0 0 0 2 0 0 0 0 1 0 4 1 1 1 0 2 2 0 1 1 0 0 16 0 1881.9546 Q15645;H0YAL2 Q15645 147 162 TRIP13 Pachytene checkpoint protein 2 homolog yes no 2 1.2508E-19 131.06 By MS/MS 2 1.0294 0.88327 13.464 2 Median NaN NaN NaN 0 0 Median 1.0294 0.88327 13.464 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2933100 1460900 1472300 0 0 0 2933100 1460900 1472300 0 0 0 0 0 0 0 0 0 0 0 0 30196 2960 31746 157553;157554 158450;158451 158451 2 SHLLSSSDAEGNYR VIMEDFNERNSSETKSHLLSSSDAEGNYRD KSHLLSSSDAEGNYRDSLETLPSTKESDST K S H Y R D 1 1 1 1 0 0 1 1 1 0 2 0 0 0 0 4 0 0 1 0 0 0 14 0 1534.7012 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1611 1624 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 6.0197E-05 77.078 By MS/MS By MS/MS 1 3 1.0939 0.9518 6.4214 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81442 0.90252 NaN 1 0 Median 1.1518 1.0031 6.4099 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7449800 3599200 3850600 0 0 0 0 0 0 2423100 1315300 1107700 5026700 2283900 2742800 0 0 0 0 0 0 30197 2762 31747 157555;157556;157557;157558 158452;158453;158454;158455;158456;158457;158458 158458 7 SHLLSSSDAEGNYRDSLETLPSTK VIMEDFNERNSSETKSHLLSSSDAEGNYRD EGNYRDSLETLPSTKESDSTQTTTPSASCP K S H T K E 1 1 1 2 0 0 2 1 1 0 4 1 0 0 1 6 2 0 1 0 0 0 24 1 2606.246 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1611 1634 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3;4 4.6594E-13 62.064 By MS/MS 4 0.75657 0.89307 7.7478 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75657 0.89307 7.7478 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92675000 50781000 41894000 0 0 0 0 0 0 92675000 50781000 41894000 0 0 0 0 0 0 0 0 0 30198 2762 31748 157559;157560;157561;157562 158459;158460;158461;158462;158463;158464;158465 158462 7 SHLSLVGTASGLGSNKK LGTNSSESRKTKKKKSHLSLVGTASGLGSN LSLVGTASGLGSNKKKKPKPPAPPTPSIYD K S H K K K 1 0 1 0 0 0 0 3 1 0 3 2 0 0 0 4 1 0 0 1 0 0 17 1 1654.9002 K7ENU1;Q14CW9 K7ENU1 152 168 ATXN7L3 Ataxin-7-like protein 3 yes no 3 8.9358E-05 44.391 By MS/MS 1 1.2568 1.3696 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2568 1.3696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5985800 2842200 3143600 0 0 0 0 0 0 5985800 2842200 3143600 0 0 0 0 0 0 0 0 0 30199 1389 31749 157563 158466;158467 158466 2 SHLVGVKPFEADR GIFQTSANSSFEPVKSHLVGVKPFEADRAN VKSHLVGVKPFEADRANVVGEVRETCVRQK K S H D R A 1 1 0 1 0 0 1 1 1 0 1 1 0 1 1 1 0 0 0 2 0 0 13 1 1453.7678 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 616 628 SEC16A Protein transport protein Sec16A yes no 3 9.0122E-05 78.486 By MS/MS By MS/MS 1 3 1.1333 1.103 22.846 4 Median 1.0486 1.0595 NaN 1 0 Median 1.2085 1.1482 26.432 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19932000 9507900 10424000 4301400 2015400 2286000 15631000 7492500 8138300 0 0 0 0 0 0 0 0 0 0 0 0 30200 1513 31750 157564;157565;157566;157567 158468;158469;158470 158469 3 SHLVHGSSPGVMGTSVATSASK SIQPSLLPHAAPFAKSHLVHGSSPGVMGTS SPGVMGTSVATSASKIIPQGADSTMLATKT K S H S K I 2 0 0 0 0 0 0 3 2 0 1 1 1 0 1 6 2 0 0 3 0 0 22 0 2096.0321 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1026 1047 NUP214 Nuclear pore complex protein Nup214 yes no 3;4 2.1514E-26 126.91 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 5 2 1 2 1.0663 0.95847 29.103 16 Median 0.64054 0.61636 21.516 3 1 Median 1.0699 0.94896 28.293 3 0 Median 0.8416 0.93764 16.138 5 0 Median 1.0931 0.98725 2.7759 2 0 Median 1.4573 1.544 NaN 1 0 Median 1.5266 1.2884 19.637 2 1 Median 74691000 38360000 36331000 9628900 5812200 3816700 9889600 5319200 4570400 42837000 22313000 20523000 6704700 2909300 3795400 1871200 664980 1206200 3760100 1340800 2419300 30201 467 31751;31752 157568;157569;157570;157571;157572;157573;157574;157575;157576;157577;157578;157579;157580;157581;157582;157583 158471;158472;158473;158474;158475;158476;158477;158478;158479;158480;158481;158482;158483;158484;158485;158486;158487;158488;158489;158490;158491 158481 200 21 SHMAEESKNEYAAQLQR TKADVEKAKQQAHLRSHMAEESKNEYAAQL MAEESKNEYAAQLQRFNRDQAHFYFSQMPQ R S H Q R F 3 1 1 0 0 2 3 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 17 1 1990.9167 M0R0F9;Q15642;M0R2H7;W4VSQ9 M0R0F9 72 88 TRIP10 Cdc42-interacting protein 4 yes no 3 0.00073239 35.757 By matching By MS/MS 1 1 0.77584 0.71217 17.253 2 Median NaN NaN NaN 0 0 Median 0.68596 0.63038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8775 0.80458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2555800 1583200 972550 0 0 0 1759400 1137300 622090 0 0 0 796320 445860 350460 0 0 0 0 0 0 30202 1426 31753 157584;157585 158492 158492 1 SHMMDVQGSTQDSAIK VVMQPEKFQSKYEPRSHMMDVQGSTQDSAI HMMDVQGSTQDSAIKDFVLKYALPLVGHRK R S H I K D 1 0 0 2 0 2 0 1 1 1 0 1 2 0 0 3 1 0 0 1 0 0 16 0 1733.7713 P13667 P13667 371 386 PDIA4 Protein disulfide-isomerase A4 yes yes 3 3.7922E-05 62.055 By matching By matching By matching By MS/MS 1 2 1 1 1.1952 1.0241 13.652 5 Median 0.93187 0.93951 NaN 1 0 Median 1.2631 1.095 9.4639 2 0 Median 0.89067 0.94737 NaN 1 0 Median 1.4791 1.2828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13880000 5989500 7890400 1236600 670110 566520 7246900 2751600 4495300 2985700 1692600 1293100 2410700 875170 1535500 0 0 0 0 0 0 30203 1993 31754 157586;157587;157588;157589;157590 158493 158493 1 SHMMDVQGSTQDSAIKDFVLK VVMQPEKFQSKYEPRSHMMDVQGSTQDSAI QGSTQDSAIKDFVLKYALPLVGHRKVSNDA R S H L K Y 1 0 0 3 0 2 0 1 1 1 1 2 2 1 0 3 1 0 0 2 0 0 21 1 2336.1141 P13667 P13667 371 391 PDIA4 Protein disulfide-isomerase A4 yes yes 3;4 6.4554E-13 81.016 By MS/MS By matching By MS/MS By matching 6 3 2 1 1.1201 1.1936 31.824 12 Median 0.96745 0.95179 28.6 6 2 Median 1.6339 1.5386 11.323 3 0 Median 1.1292 1.2674 13.567 2 0 Median 1.4093 1.3768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85220000 41724000 43496000 68638000 34160000 34479000 1988200 792820 1195300 13762000 6438200 7323600 831670 332950 498710 0 0 0 0 0 0 30204 1993 31755;31756 157591;157592;157593;157594;157595;157596;157597;157598;157599;157600;157601;157602 158494;158495;158496;158497;158498;158499;158500;158501;158502;158503 158498 782 10 SHNVAAGSYEAPLPPGSFHGDFAYGTYR RSSLSSHSHQSQIYRSHNVAAGSYEAPLPP PPGSFHGDFAYGTYRSNFSSGPGFPEYGYP R S H Y R S 4 1 1 1 0 0 1 4 2 0 1 0 0 2 3 3 1 0 3 1 0 0 28 0 2967.3576 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5 O15027 1382 1409 SEC16A Protein transport protein Sec16A yes no 4 4.1047E-15 70.647 By MS/MS 1 0.59368 0.57159 NaN 1 Median 0.59368 0.57159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4302100 3096200 1205900 4302100 3096200 1205900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30205 1513 31757 157603 158504 158504 1 SHPAMSPGTPGPTMGR QYAAASPAWAAAQQRSHPAMSPGTPGPTMG HPAMSPGTPGPTMGRSQGSPMDPMVMKRPQ R S H G R S 1 1 0 0 0 0 0 3 1 0 0 0 2 0 4 2 2 0 0 0 0 0 16 0 1579.7235 A0A3F2YNW7;Q8NFD5;A0A1B0GU09;A0A1B0GUC6;A0A1B0GUG2 A0A3F2YNW7 580 595 ARID1B AT-rich interactive domain-containing protein 1B yes no 3 0.0026261 43.592 By MS/MS 1 0.5414 0.60177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5414 0.60177 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2748200 1709900 1038300 0 0 0 0 0 0 2748200 1709900 1038300 0 0 0 0 0 0 0 0 0 30206 449 31758 157604 158505 158505 1 SHPLDPIDTVDFER IHTEPQLSAALEYVRSHPLDPIDTVDFERE RSHPLDPIDTVDFERECGVGVIVTPEQIEE R S H E R E 0 1 0 3 0 0 1 0 1 1 1 0 0 1 2 1 1 0 0 1 0 0 14 0 1639.7842 P47897;A0A1B0GVU9;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQL2 P47897 96 109 QARS Glutamine--tRNA ligase yes no 2;3 6.0197E-05 77.078 By MS/MS By matching By matching 2 2 1 0.7068 0.66555 4.6446 5 Median 0.68622 0.65478 3.5142 2 0 Median 0.76916 0.67449 1.8868 2 0 Median NaN NaN NaN 0 0 Median 0.62313 0.60874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17099000 9533100 7565900 11581000 6620300 4960800 5256200 2760900 2495300 0 0 0 261740 151870 109860 0 0 0 0 0 0 30207 2356 31759 157605;157606;157607;157608;157609 158506;158507 158506 2 SHPLPETAVR TQHSRIWPLYLRFLRSHPLPETAVRGYRRF LRFLRSHPLPETAVRGYRRFLKLSPESAEE R S H V R G 1 1 0 0 0 0 1 0 1 0 1 0 0 0 2 1 1 0 0 1 0 0 10 0 1105.588 Q9HCS7 Q9HCS7 158 167 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.029477 47.574 By MS/MS By MS/MS 1 1 0.70114 0.60867 NaN 1 Median NaN NaN NaN 0 0 Median 0.70114 0.60867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2342400 1325300 1017100 0 0 0 2342400 1325300 1017100 0 0 0 0 0 0 0 0 0 0 0 0 30208 4032 31760 157610;157611 158508;158509 158509 2 SHPQHYTQAMFK LNKMMVQDLHSALDRSHPQHYTQAMFKLTA LDRSHPQHYTQAMFKLTAMLISSKDCDPQL R S H F K L 1 0 0 0 0 2 0 0 2 0 0 1 1 1 1 1 1 0 1 0 0 0 12 0 1473.6823 P42356 P42356 1184 1195 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 3 0.032671 20.009 By MS/MS 1 0.84131 0.73844 NaN 1 Median NaN NaN NaN 0 0 Median 0.84131 0.73844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1453000 717070 735930 0 0 0 1453000 717070 735930 0 0 0 0 0 0 0 0 0 0 0 0 30209 2311 31761 157612 158510 158510 1 SHQGLDRQELSFAAR GLEERVAAAVDLIIKSHQGLDRQELSFAAR SHQGLDRQELSFAARSFYYKLRAAEQYTPK K S H A R S 2 2 0 1 0 2 1 1 1 0 2 0 0 1 0 2 0 0 0 0 0 0 15 1 1713.8547 P49327;A0A0U1RQF0 P49327 2407 2421 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3;4 1.0739E-09 98.439 By MS/MS 3 1.0492 1.122 30.737 3 Median 1.0492 1.122 30.737 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108320000 57500000 50821000 108320000 57500000 50821000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30210 2377 31762 157613;157614;157615 158511;158512;158513;158514 158512 4 SHQTGIQASEDVK ______________________________ ______________________________ M S H V K E 1 0 0 1 0 2 1 1 1 1 0 1 0 0 0 2 1 0 0 1 0 0 13 0 1398.6739 Q12792;F8VRG3 Q12792 2 14 TWF1 Twinfilin-1 yes no 2 7.7329E-10 170.04 By MS/MS 2 1.1575 0.98189 13.17 2 Median NaN NaN NaN 0 0 Median 1.1575 0.98189 13.17 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8133600 3777100 4356500 0 0 0 8133600 3777100 4356500 0 0 0 0 0 0 0 0 0 0 0 0 30211 2759 31763 157616;157617 158515;158516;158517;158518 158516 4 SHQTGIQASEDVKEIFAR ______________________________ TGIQASEDVKEIFARARNGKYRLLKISIEN M S H A R A 2 1 0 1 0 2 2 1 1 2 0 1 0 1 0 2 1 0 0 1 0 0 18 1 2015.0072 Q12792;F8VRG3 Q12792 2 19 TWF1 Twinfilin-1 yes no 3 4.0541E-06 73.809 By MS/MS By matching By matching 3 2 1 1.1377 1.0638 26.304 6 Median 1.1548 1.2373 41.204 3 0 Median 1.1451 1.0638 1.7941 2 0 Median NaN NaN NaN 0 0 Median 1.0944 0.96786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20511000 9689300 10821000 16628000 7782300 8845800 3563300 1775200 1788100 0 0 0 319330 131850 187480 0 0 0 0 0 0 30212 2759 31764 157618;157619;157620;157621;157622;157623 158519 158519 1 SHRDPYATSVGHLIEK ______________________________ HRDPYATSVGHLIEKATFAGVQTEDWGQFM K S H E K A 1 1 0 1 0 0 1 1 2 1 1 1 0 0 1 2 1 0 1 1 0 0 16 1 1808.9169 I3L0N2;I3L3M3;I3L4G0;I3L1G1;J3KQU4;I3L4I4;O75674 I3L0N2 6 21 TOM1L1 TOM1-like protein 1 yes no 4 0.0025391 28.549 By MS/MS 1 1.1742 1.0293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1742 1.0293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1493900 688570 805290 0 0 0 0 0 0 0 0 0 1493900 688570 805290 0 0 0 0 0 0 30213 1271 31765 157624 158520 158520 1 SHRPFVNFGRPEGGK RPPGEDFRSPPDDFRSHRPFVNFGRPEGGK SHRPFVNFGRPEGGKFDFGKHNMGSFPEGR R S H G K F 0 2 1 0 0 0 1 3 1 0 0 1 0 2 2 1 0 0 0 1 0 0 15 2 1683.8594 B9ZVT1;Q8IXT5 B9ZVT1 761 775 RBM12B RNA-binding protein 12B yes no 4 0.030312 17.867 By MS/MS By MS/MS By matching 1 1 1 0.9516 0.82486 27.256 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1579 1.161 NaN 1 0 Median 0.57915 0.67751 NaN 1 0 Median 0.9516 0.82486 NaN 1 0 Median 7088600 4252200 2836400 0 0 0 0 0 0 0 0 0 1305000 528120 776850 5127500 3333400 1794000 656190 390630 265560 30214 658 31766 157625;157626;157627 158521;158522 158522 2 SHRTEMDWVLK KDRESMGHRYIEVFKSHRTEMDWVLKHSGP EVFKSHRTEMDWVLKHSGPNSADSANDGFV K S H L K H 0 1 0 1 0 0 1 0 1 0 1 1 1 0 0 1 1 1 0 1 0 0 11 1 1400.6871 P52597;A0A1B0GW42 P52597 88 98 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 3 0.0022738 42.976 By matching By MS/MS By matching 1 3 1 1.0167 1.0373 14.677 5 Median 0.80829 0.81048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0167 1.0705 7.066 3 0 Median 1.019 0.92202 NaN 1 0 Median 30445000 15345000 15100000 3030100 1373200 1656900 0 0 0 0 0 0 0 0 0 23872000 12499000 11373000 3542700 1472800 2069900 30215 2452 31767 157628;157629;157630;157631;157632 158523 158523 1 SHRVPLDVACAR LDAQLSTGGIVDPSKSHRVPLDVACARGCL PSKSHRVPLDVACARGCLDEETSRALSAPR K S H A R G 2 2 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 12 1 1379.7092 Q15149;H0YDN1 Q15149 3286 3297 PLEC Plectin yes no 3 0.0015133 42.809 By MS/MS 1 0.96076 1.0559 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96076 1.0559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1615700 851100 764610 0 0 0 0 0 0 1615700 851100 764610 0 0 0 0 0 0 0 0 0 30216 2933 31768 157633 158524 158524 1 SHSAHFFEFLTK SISSIGVVGTAEDNRSHSAHFFEFLTKELA DNRSHSAHFFEFLTKELALGQDRILIRFFP R S H T K E 1 0 0 0 0 0 1 0 2 0 1 1 0 3 0 2 1 0 0 0 0 0 12 0 1449.7041 P30046;J3KQ18;B5MC82;A6NHG4 P30046 76 87 DDT;DDTL D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein yes no 2;3 1.0267E-06 132.56 By MS/MS By MS/MS By MS/MS 2 1 2 1.1103 1.0595 4.2251 5 Median 1.1009 0.99635 2.3842 2 0 Median 1.3263 1.0897 NaN 1 0 Median 1.1075 1.0599 0.052056 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111840000 51154000 60682000 60273000 28128000 32145000 26937000 11608000 15329000 24626000 11418000 13208000 0 0 0 0 0 0 0 0 0 30217 2182 31769 157634;157635;157636;157637;157638 158525;158526;158527;158528;158529;158530;158531;158532;158533;158534;158535;158536;158537 158534 13 SHSIFLINVK NRHVAVTNMNEHSSRSHSIFLINVKQENTQ EHSSRSHSIFLINVKQENTQTEQKLSGKLY R S H V K Q 0 0 1 0 0 0 0 0 1 2 1 1 0 1 0 2 0 0 0 1 0 0 10 0 1156.6604 P33176 P33176 204 213 KIF5B Kinesin-1 heavy chain yes yes 2 3.97E-05 139.88 By MS/MS 1 1.1829 1.1441 NaN 1 Median 1.1829 1.1441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12348000 5538600 6809800 12348000 5538600 6809800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30218 2221 31770 157639 158538;158539 158538 2 SHSPSSPDPDTPSPVGDSR PSAPPGGSPHLDSSRSHSPSSPDPDTPSPV SSPDPDTPSPVGDSRALQASRNTRIPHLAG R S H S R A 0 1 0 3 0 0 0 1 1 0 0 0 0 0 5 6 1 0 0 1 0 0 19 0 1920.845 Q13586;E9PNJ4;G0XQ39;H0YDB2 Q13586 616 634 STIM1 Stromal interaction molecule 1 yes no 3 4.2759E-05 40.349 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.6314 0.56052 25.314 4 Median 0.43367 0.42932 NaN 1 0 Median 0.70797 0.64071 NaN 1 0 Median 0.70042 0.75095 NaN 1 0 Median 0.56918 0.49036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5677800 3575900 2101900 1834400 1195200 639220 940350 482640 457720 1353400 880960 472470 1549600 1017100 532490 0 0 0 0 0 0 30219 2827 31771 157640;157641;157642;157643 158540;158541;158542;158543;158544 158543 5 SHSSFQASLTGR LLLVFAVGFLCHDLRSHSSFQASLTGRLLR DLRSHSSFQASLTGRLLRSSGFLPASQQAC R S H G R L 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 4 1 0 0 0 0 0 12 0 1276.616 Q6NUQ4;H7C008 Q6NUQ4 503 514 TMEM214 Transmembrane protein 214 yes no 2;3 0.00023098 100.48 By MS/MS By MS/MS 2 1 1.0625 1.1209 32.002 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0199 1.0767 5.6818 2 1 Median 0.72418 0.62127 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8124500 4177100 3947400 0 0 0 0 0 0 7286400 3665700 3620700 838080 511420 326670 0 0 0 0 0 0 30220 3145 31772 157644;157645;157646 158545;158546;158547 158546 3 SHSTEPGLVLTLGQGDVGQLGLGENVMER ADAIPKSKKVKVSHRSHSTEPGLVLTLGQG GDVGQLGLGENVMERKKPALVSIPEDVVQA R S H E R K 0 1 1 1 0 2 3 6 1 0 5 0 1 0 1 2 2 0 0 3 0 0 29 0 2992.4924 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 29 57 RCC1 Regulator of chromosome condensation yes no 2;3;4 3.5982E-81 195.27 By MS/MS By matching By matching By matching 5 3 1 4 0.88363 0.81074 48.133 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84787 0.81545 8.2672 5 1 Median 0.97918 0.82922 100.85 3 0 Median 0.93691 0.9909 NaN 1 0 Median 1.0308 0.79883 12.764 4 0 Linear 310360000 173690000 136670000 0 0 0 0 0 0 291840000 161000000 130850000 14535000 10693000 3842100 1447100 717230 729880 2537600 1286800 1250800 30221 2061 31773;31774 157647;157648;157649;157650;157651;157652;157653;157654;157655;157656;157657;157658;157659 158548;158549;158550;158551;158552;158553;158554;158555;158556;158557 158552 829 10 SHSVFQLQISGEHSSR NRAVARTAQNERSSRSHSVFQLQISGEHSS HSVFQLQISGEHSSRGLQCGAPLSLVDLAG R S H S R G 0 1 0 0 0 2 1 1 2 1 1 0 0 1 0 5 0 0 0 1 0 0 16 0 1797.8758 Q9BW19;A0A087X1W5 Q9BW19 538 553 KIFC1 Kinesin-like protein KIFC1;Kinesin-like protein yes no 3 4.2265E-14 101.01 By MS/MS 2 1.2066 1.2341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2066 1.2341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7690800 3580200 4110600 0 0 0 0 0 0 7690800 3580200 4110600 0 0 0 0 0 0 0 0 0 30222 3860 31775 157660;157661 158558;158559 158559 2 SHTFPELAYR QFTVEAAEVVFPNGKSHTFPELAYRKEMVR FPNGKSHTFPELAYRKEMVRADLINKKVGI K S H Y R K 1 1 0 0 0 0 1 0 1 0 1 0 0 1 1 1 1 0 1 0 0 0 10 0 1219.5986 Q9NSD9 Q9NSD9 296 305 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0017935 62.546 By matching By MS/MS 1 1 0.98365 0.87496 20.175 2 Median 0.8003 0.75864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.209 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15599000 8751100 6848200 13856000 7904200 5951300 0 0 0 0 0 0 1743800 846860 896910 0 0 0 0 0 0 30223 4102 31776 157662;157663 158560 158560 1 SHTILLVQPTK ______________________________ ______________________________ M S H T K R 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1235.7238 P84090;G3V279 P84090 2 12 ERH Enhancer of rudimentary homolog yes no 2 1.2964E-53 240.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 4 1 0.92917 0.87893 9.3694 12 Median 0.87719 0.77719 3.3639 2 0 Median 1.0853 0.89346 0.8743 2 0 Median 0.92917 0.90306 5.2764 2 0 Median 1.1431 0.87666 5.6665 2 0 Median 0.91633 1.0083 16.801 3 0 Plateau 1.0063 0.82126 NaN 1 0 Median 2085600000 1063100000 1022500000 290890000 155210000 135690000 231950000 111420000 120530000 502020000 253850000 248170000 185750000 86310000 99436000 832610000 436360000 396250000 42381000 19901000 22480000 30224 2666 31777 157664;157665;157666;157667;157668;157669;157670;157671;157672;157673;157674;157675;157676 158561;158562;158563;158564;158565;158566;158567;158568;158569;158570;158571;158572;158573;158574;158575;158576;158577;158578;158579;158580;158581;158582;158583;158584;158585;158586;158587;158588;158589;158590;158591;158592;158593;158594;158595 158589 35 SHTILLVQPTKRPEGR ______________________________ HTILLVQPTKRPEGRTYADYESVNECMEGV M S H G R T 0 2 0 0 0 1 1 1 1 1 2 1 0 0 2 1 2 0 0 1 0 0 16 2 1831.0428 P84090;G3V279 P84090 2 17 ERH Enhancer of rudimentary homolog yes no 2;3;4 4.4666E-47 220.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 5 1 0.80206 0.87514 17.2 12 Median 0.71042 0.80182 1.8544 2 0 Median 0.85521 0.88192 11.702 2 0 Median 0.81453 0.95152 4.6928 2 0 Median NaN NaN NaN 0 0 Median 0.81643 1.0097 26.233 5 0 Median 0.90834 0.83206 NaN 1 0 Median 518660000 281710000 236950000 61427000 36038000 25389000 52984000 25533000 27450000 78380000 44321000 34058000 0 0 0 323120000 174310000 148810000 2746600 1502900 1243700 30225 2666 31778 157677;157678;157679;157680;157681;157682;157683;157684;157685;157686;157687;157688 158596;158597;158598;158599;158600;158601;158602;158603;158604;158605;158606;158607;158608;158609;158610;158611;158612;158613;158614;158615;158616;158617 158612 22 SHTSEGAHLDITPNSGAAGNSAGPK GTRSRSHTSEGTRSRSHTSEGAHLDITPNS ITPNSGAAGNSAGPKSMEVSC_________ R S H P K S 4 0 2 1 0 0 1 4 2 1 1 1 0 0 2 4 2 0 0 0 0 0 25 0 2375.1102 Q92597;E5RJY1;E7ESM1 Q92597 364 388 NDRG1 Protein NDRG1 yes no 3;4 6.2884E-10 60.991 By MS/MS By MS/MS 4 1 0.89231 0.76974 11.396 5 Median 0.82281 0.79953 13.053 4 1 Median 0.89256 0.76974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21534000 11200000 10334000 19558000 10136000 9421600 1975800 1063400 912380 0 0 0 0 0 0 0 0 0 0 0 0 30226 3540 31779 157689;157690;157691;157692;157693 158618;158619;158620;158621;158622 158620 5 SHTSLKDELSDVSQGGSK PGSEQWKFQELSQPRSHTSLKDELSDVSQG SLKDELSDVSQGGSKATTPASTANSDVATI R S H S K A 0 0 0 2 0 1 1 2 1 0 2 2 0 0 0 5 1 0 0 1 0 0 18 1 1873.9017 A0A087X2D8 A0A087X2D8 242 259 SPAG9 yes yes 3 1.2211E-09 87.654 By MS/MS By MS/MS 2 3 1.4451 1.3782 9.9278 5 Median 1.2553 1.2198 9.2561 2 2 Median 1.5495 1.4028 3.8416 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53256000 22952000 30304000 17211000 7492700 9718000 36045000 15459000 20586000 0 0 0 0 0 0 0 0 0 0 0 0 30227 134 31780 157694;157695;157696;157697;157698 158623;158624;158625 158623 3 SHTVAAQGGINAALGNMEEDNWR AGFNTACVTKLFPTRSHTVAAQGGINAALG GINAALGNMEEDNWRWHFYDTVKGSDWLGD R S H W R W 4 1 3 1 0 1 2 3 1 1 1 0 1 0 0 1 1 1 0 1 0 0 23 0 2440.119 P31040;D6RFM5;A0A087X1I3;A0A494C1T6 P31040 98 120 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 7.6027E-24 105.46 By MS/MS By matching 1 1 1.2687 1.1779 20.122 2 Median 1.054 1.0216 NaN 1 0 Median 1.527 1.358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5921600 2598100 3323500 5516700 2454900 3061900 404940 143280 261660 0 0 0 0 0 0 0 0 0 0 0 0 30228 2200 31781 157699;157700 158626 158626 1 SHVAGQMLHGGGSR CLDATMPRVSEDVYRSHVAGQMLHGGGSRL RSHVAGQMLHGGGSRLNSGNRWFDKTLQFI R S H S R L 1 1 0 0 0 1 0 4 2 0 1 0 1 0 0 2 0 0 0 1 0 0 14 0 1392.6681 P43155 P43155 302 315 CRAT Carnitine O-acetyltransferase yes yes 3 0.01458 23.934 By matching By MS/MS By matching 1 1 1 1.5818 1.371 24.494 3 Median 1.0033 0.97136 NaN 1 0 Median 1.5818 1.371 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7891 1.5602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1448300 523230 925030 317180 176920 140260 1040300 304720 735620 0 0 0 90749 41597 49152 0 0 0 0 0 0 30229 2323 31782 157701;157702;157703 158627 158627 1 SHVEDGDIAGAPASSPEAPPAEQDPVQLK SDELALVRQQLSEMKSHVEDGDIAGAPASS SPEAPPAEQDPVQLKTQLEWTEAILEDEQT K S H L K T 5 0 0 3 0 2 3 2 1 1 1 1 0 0 5 3 0 0 0 2 0 0 29 0 2911.3836 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1263 1291 RRBP1 Ribosome-binding protein 1 yes no 3 5.4728E-29 76.439 By MS/MS By matching By MS/MS 1 1 1 0.76706 0.65936 50.358 3 Median 0.34956 0.33788 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83577 0.90623 NaN 1 0 Median 0.76706 0.65936 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20776000 13999000 6777200 12148000 8478900 3669100 0 0 0 4987300 2958200 2029100 3640700 2561700 1079000 0 0 0 0 0 0 30230 4222 31783 157704;157705;157706 158628;158629 158628 2 SHYAAEEISEK RFSSCIDMGKELLARSHYAAEEISEKLSQL LLARSHYAAEEISEKLSQLQARRQETAEKW R S H E K L 2 0 0 0 0 0 3 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 11 0 1262.5779 O15020 O15020 1977 1987 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 0.00018979 108.67 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.2729 1.1266 20.106 8 Median NaN NaN NaN 0 0 Median 1.5936 1.4002 22.756 3 2 Median 0.83895 0.93057 0.70936 2 0 Median 1.4562 1.3227 10.746 2 0 Median NaN NaN NaN 0 0 Median 1.1996 1.0353 NaN 1 0 Median 20655000 9912100 10743000 0 0 0 3847300 1468000 2379300 14094000 7272100 6822000 2359000 967840 1391100 0 0 0 355010 204070 150930 30231 1512 31784 157707;157708;157709;157710;157711;157712;157713;157714 158630;158631;158632;158633;158634;158635;158636;158637;158638;158639 158631 9 SHYADVDPENQNFLLESNLGK SDFNYSYPTKQAALKSHYADVDPENQNFLL DPENQNFLLESNLGKKKYETEFHPGTTSFG K S H G K K 1 0 3 2 0 1 2 1 1 0 3 1 0 1 1 2 0 0 1 1 0 0 21 0 2389.1186 Q96QD8;F8VUY8 Q96QD8 39 59 SLC38A2 Sodium-coupled neutral amino acid transporter 2 yes no 2;3 1.4295E-25 103.17 By MS/MS By MS/MS 4 4 0.91587 0.85438 25.894 8 Median 0.97601 0.95828 3.5322 4 2 Median 0.70848 0.62815 19.192 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93335000 46917000 46418000 82017000 40327000 41690000 11318000 6589700 4727900 0 0 0 0 0 0 0 0 0 0 0 0 30232 3719 31785 157715;157716;157717;157718;157719;157720;157721;157722 158640;158641;158642;158643;158644;158645;158646;158647 158644 8 SHYADVDPENQNFLLESNLGKK SDFNYSYPTKQAALKSHYADVDPENQNFLL PENQNFLLESNLGKKKYETEFHPGTTSFGM K S H K K K 1 0 3 2 0 1 2 1 1 0 3 2 0 1 1 2 0 0 1 1 0 0 22 1 2517.2136 Q96QD8;F8VUY8 Q96QD8 39 60 SLC38A2 Sodium-coupled neutral amino acid transporter 2 yes no 3 3.7852E-13 80.156 By MS/MS 1 0.69032 0.75184 NaN 1 Median 0.69032 0.75184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15486000 6820800 8665500 15486000 6820800 8665500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30233 3719 31786 157723 158648 158648 1 SHYFEGVLK YNNLDVSVTKALQHRSHYFEGVLKCYLHET KALQHRSHYFEGVLKCYLHETLETIINRLV R S H L K C 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 9 0 1078.5447 F8VYY9;P54619;H0YHF8;H0YIC9;F8VZX1 F8VYY9 219 227 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 yes no 2 0.00098137 87.181 By MS/MS 2 1.6164 1.3795 28.151 2 Median NaN NaN NaN 0 0 Median 1.6164 1.3795 28.151 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14026000 5459800 8565900 0 0 0 14026000 5459800 8565900 0 0 0 0 0 0 0 0 0 0 0 0 30234 1076 31787 157724;157725 158649;158650 158650 2 SHYVLYGLVAAMQPR VLVSFLDVRNIILGKSHYVLYGLVAAMQPR SHYVLYGLVAAMQPRMLVTFDEELRPLPVS K S H P R M 2 1 0 0 0 1 0 1 1 0 2 0 1 0 1 1 0 0 2 2 0 0 15 0 1703.8817 Q13200 Q13200 814 828 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 1.3312E-09 107.24 By MS/MS 1 0.57908 0.50179 NaN 1 Median NaN NaN NaN 0 0 Median 0.57908 0.50179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3580600 2225600 1355000 0 0 0 3580600 2225600 1355000 0 0 0 0 0 0 0 0 0 0 0 0 30235 2796 31788 157726 158651 158651 1 SIAAATSALVK DESLNFEEQILEAAKSIAAATSALVKAASA EAAKSIAAATSALVKAASAAQRELVAQGKV K S I V K A 4 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1030.6023 Q9Y490 Q9Y490 2351 2361 TLN1 Talin-1 no no 2 0.00013804 108.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 1.2416 1.1263 47.235 8 Median 0.90578 0.88343 2.2686 2 0 Median 1.2831 1.1464 3.3044 3 0 Plateau 1.1841 1.3058 NaN 1 0 Median 1.2609 1.1381 NaN 1 0 Median 3.6733 3.8507 NaN 1 1 Median NaN NaN NaN 0 0 Median 110120000 49633000 60485000 37088000 18797000 18291000 49636000 20914000 28722000 14542000 7166900 7375400 3776300 1578700 2197700 5076000 1176700 3899300 0 0 0 30236 4441 31789 157727;157728;157729;157730;157731;157732;157733;157734 158652;158653;158654;158655;158656;158657;158658;158659;158660;158661 158654 10 SIAADHKDLIHDVSFDFHGR ______________________________ HKDLIHDVSFDFHGRRMATCSSDQSVKVWD R S I G R R 2 1 0 4 0 0 0 1 3 2 1 1 0 2 0 2 0 0 0 1 0 0 20 1 2279.1083 Q96EE3;K7ELV2;K7EP88;K7ENI5 Q96EE3 6 25 SEH1L Nucleoporin SEH1 yes no 5 8.9957E-06 44.382 By MS/MS 2 1.1716 1.3023 19.157 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1716 1.3023 19.157 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14348000 5812000 8535600 0 0 0 0 0 0 14348000 5812000 8535600 0 0 0 0 0 0 0 0 0 30237 3634 31790 157735;157736 158662;158663;158664 158663 3 SIADSEESEAYK SSGKAGKPPCGATKRSIADSEESEAYKSLF TKRSIADSEESEAYKSLFTTHSSAKRSKEE R S I Y K S 2 0 0 1 0 0 3 0 0 1 0 1 0 0 0 3 0 0 1 0 0 0 12 0 1327.578 Q9BY42;A0A0A0MQR2 Q9BY42 268 279 RTFDC1 Protein RTF2 homolog yes no 2 3.6978E-06 107.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0415 0.94436 6.3942 5 Median 1.0699 1.0051 NaN 1 0 Median 1.0165 0.85715 NaN 1 0 Median 0.98799 0.94436 NaN 1 0 Median 1.0869 0.91976 5.6626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13999000 6987500 7011600 2862200 1334300 1528000 1714900 902350 812600 2775800 1289700 1486100 6646100 3461100 3184900 0 0 0 0 0 0 30238 145 31791 157737;157738;157739;157740;157741 158665;158666;158667;158668;158669;158670;158671;158672 158670 8 SIAEEQYSDLEKEK LEITLTKADSEQLARSIAEEQYSDLEKEKI RSIAEEQYSDLEKEKIMKELEIKEMMARHK R S I E K I 1 0 0 1 0 1 4 0 0 1 1 2 0 0 0 2 0 0 1 0 0 0 14 1 1667.789 O75116;E9PF63;Q14DU5 O75116 930 943 ROCK2 Rho-associated protein kinase 2 yes no 2;3 0.00012469 142.08 By MS/MS By MS/MS 2 1 0.83927 0.88747 17.6 2 Median 0.80883 0.78362 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87087 1.0051 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18553000 9814800 8738200 9696600 5088400 4608200 0 0 0 8856400 4726400 4130000 0 0 0 0 0 0 0 0 0 30239 1644 31792 157742;157743;157744 158673;158674;158675 158673 3 SIAFHSAVSLDPIK EYIPEGEILVITYGRSIAFHSAVSLDPIKS RSIAFHSAVSLDPIKSFEAPATINSASLHP R S I I K S 2 0 0 1 0 0 0 0 1 2 1 1 0 1 1 3 0 0 0 1 0 0 14 0 1483.8035 Q9Y3F4 Q9Y3F4 205 218 STRAP Serine-threonine kinase receptor-associated protein yes yes 2;3 5.4319E-08 156.58 By MS/MS By matching By MS/MS By matching 3 5 3 2 1.0077 0.90855 20.458 13 Median 1.0143 0.93723 10.444 3 0 Median 1.0077 0.90855 24.251 5 0 Median 1.0996 1.1368 24.671 3 0 Median 0.98665 0.82799 1.5241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59394000 29188000 30206000 40667000 19897000 20769000 3616100 2023100 1593000 13651000 6553900 7096600 1460800 714330 746480 0 0 0 0 0 0 30240 4429 31793 157745;157746;157747;157748;157749;157750;157751;157752;157753;157754;157755;157756;157757 158676;158677;158678;158679;158680;158681 158676 6 SIAFPSIGSGR TVKNCLALADDKKLKSIAFPSIGSGRNGFP KKLKSIAFPSIGSGRNGFPKQTAAQLILKA K S I G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 1 3 0 0 0 0 0 0 11 0 1090.5771 O75367;B4DJC3 O75367 308 318 H2AFY Core histone macro-H2A.1;Histone H2A yes no 2 0.0001134 147.2 By MS/MS By MS/MS 11 4 0.90137 0.89613 10.097 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87389 0.88141 8.2858 7 3 Median 1.2033 0.94868 13.036 4 1 Median 400210000 204510000 195700000 0 0 0 0 0 0 0 0 0 0 0 0 302820000 160640000 142180000 97386000 43869000 53517000 30241 1662 31794 157758;157759;157760;157761;157762;157763;157764;157765;157766;157767;157768;157769;157770;157771;157772 158682;158683;158684;158685;158686;158687;158688;158689;158690;158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706;158707;158708;158709;158710;158711;158712;158713;158714;158715;158716;158717 158685 36 SIAIGSQPVLTVGTTHISK DLQSTKEERFPAIHKSIAIGSQPVLTVGTT GSQPVLTVGTTHISKLTDDQLIKEFLSGSY K S I S K L 1 0 0 0 0 1 0 2 1 3 1 1 0 0 1 3 3 0 0 2 0 0 19 0 1908.068 Q96DZ1 Q96DZ1 310 328 ERLEC1 Endoplasmic reticulum lectin 1 yes yes 3 0.0045658 24.893 By MS/MS 1 0.74986 0.71231 NaN 1 Median 0.74986 0.71231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3913600 2076100 1837500 3913600 2076100 1837500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30242 3630 31795 157773 158718;158719 158718 2 SIAIMRPNNLVHFTESK DLDPEVFQRLVITARSIAIMRPNNLVHFTE AIMRPNNLVHFTESKLPQMETEGMDEGKEP R S I S K L 1 1 2 0 0 0 1 0 1 2 1 1 1 1 1 2 1 0 0 1 0 0 17 1 1956.0251 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2579 2595 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2;3 1.1098E-23 138.42 By MS/MS By MS/MS 2 1 0.97828 0.96027 23.384 2 Median 0.78565 0.81393 NaN 1 1 Median 1.2181 1.1329 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15530000 7441100 8088700 8989500 4494500 4495000 6540400 2946600 3593800 0 0 0 0 0 0 0 0 0 0 0 0 30243 3089 31796 157774;157775;157776 158720;158721;158722 158720 3 SIALTQAR DVRLLQEIVDQCMNRSIALTQARYLEKEEK VDQCMNRSIALTQARYLEKEEKCLPPPSIR R S I A R Y 2 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 0 858.49232 O15269 O15269 423 430 SPTLC1 Serine palmitoyltransferase 1 yes yes 2 0.06525 48.561 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30244 1536 31797 157777 158723 158723 1 SIAPSIFGGTDMK RRLAALPNVYEVISKSIAPSIFGGTDMKKA SKSIAPSIFGGTDMKKAIACLLFGGSRKRL K S I M K K 1 0 0 1 0 0 0 2 0 2 0 1 1 1 1 2 1 0 0 0 0 0 13 0 1322.654 P33992;B1AHB1 P33992 338 350 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 6.603E-07 118.28 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0548 0.92156 20.62 5 Median 0.96539 0.95981 32.902 2 0 Median 1.0548 0.92156 NaN 1 0 Median 0.78063 0.78778 NaN 1 0 Median 1.2834 1.1158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39248000 20372000 18876000 17857000 9164500 8692400 7903700 3868500 4035200 12876000 7044200 5831900 611360 294890 316470 0 0 0 0 0 0 30245 2224 31798 157778;157779;157780;157781;157782 158724;158725;158726;158727 158725 4 SIAPSIFGGTDMKK RRLAALPNVYEVISKSIAPSIFGGTDMKKA KSIAPSIFGGTDMKKAIACLLFGGSRKRLP K S I K K A 1 0 0 1 0 0 0 2 0 2 0 2 1 1 1 2 1 0 0 0 0 0 14 1 1450.749 P33992;B1AHB1 P33992 338 351 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 0.00021783 78.096 By MS/MS By MS/MS 3 1 0.78881 0.85959 7.7849 3 Median 0.78881 0.85959 7.7849 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31329000 15664000 15665000 31329000 15664000 15665000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30246 2224 31799 157783;157784;157785;157786 158728;158729;158730;158731 158729 4 SICEVLDLER KKEEMLKKFRNAMLKSICEVLDLERSGVNS NAMLKSICEVLDLERSGVNSELVKRILNFL K S I E R S 0 1 0 1 1 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1232.6071 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;D6RDA2 H0Y993 159 168 DEK Protein DEK yes no 2 0.0013354 73.985 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.88744 0.88971 7.6618 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82105 0.82393 NaN 1 0 Median 1.1263 0.98618 NaN 1 0 Median 0.88172 0.88401 0.90852 2 2 Median 1.1193 0.97931 NaN 1 0 Median 13927000 7331900 6594900 0 0 0 0 0 0 4797500 2599700 2197800 327140 155390 171760 8434800 4392800 4041900 367450 183980 183470 30247 1166 31800 157787;157788;157789;157790;157791 158732;158733;158734 158732 3 SIDDEITEAK QLYQVDSRTYLLDFRSIDDEITEAKSGTAT LLDFRSIDDEITEAKSGTATPQRSGSVSNY R S I A K S 1 0 0 2 0 0 2 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 10 0 1119.5295 Q13131 Q13131 476 485 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 yes yes 2 0.0014456 87.308 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30248 2788 31801 157792 158735 158735 1 SIDDLEEK TRAEFAERSVTKLEKSIDDLEEKVAHAKEE SVTKLEKSIDDLEEKVAHAKEENLSMHQML K S I E K V 0 0 0 2 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 947.44476 H7BYY1 H7BYY1 216 223 TPM1 no no 2 0.01208 55.676 By matching By MS/MS 1 1 0.80729 0.73595 3.1581 2 Median 0.73218 0.7197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89012 0.75257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3836800 1980700 1856100 2035400 1045400 989980 0 0 0 0 0 0 1801400 935310 866090 0 0 0 0 0 0 30249 1249 31802 157793;157794 158736 158736 1 SIDELNSAWDSLNK LIAACGEPDKPIVKKSIDELNSAWDSLNKA KSIDELNSAWDSLNKAWKDRIDKLEEAMQA K S I N K A 1 0 2 2 0 0 1 0 0 1 2 1 0 0 0 3 0 1 0 0 0 0 14 0 1590.7526 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073 E9PHM6 4154 4167 DST Dystonin yes no 2 0.0003072 73.781 By MS/MS By MS/MS By matching 1 1 1 1.0079 1.0009 30.119 3 Plateau 1.0079 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95145 1.0395 NaN 1 0 Median 0.64697 0.60603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6549000 3080500 3468400 4227400 1978700 2248700 0 0 0 2247300 1070600 1176700 74323 31277 43046 0 0 0 0 0 0 30250 934 31803 157795;157796;157797 158737;158738;158739 158737 3 SIDFPLTK LPEGKLKEEIEVMAKSIDFPLTKVYVVEGS EIEVMAKSIDFPLTKVYVVEGSKRSSHSNA K S I T K V 0 0 0 1 0 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 8 0 919.50148 O75844 O75844 244 251 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 2 0.055773 53.968 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30251 1700 31804 157798 158740 158740 1 SIDGTADDEDEGVPTDQAIR IDTESISALIKQVNKSIDGTADDEDEGVPT ADDEDEGVPTDQAIRAGLELLKVLSFTHPI K S I I R A 2 1 0 5 0 1 2 2 0 2 0 0 0 0 1 1 2 0 0 1 0 0 20 0 2102.924 Q9NTI5 Q9NTI5 628 647 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 8.5046E-19 144.27 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 1 0.89774 0.76469 22.662 9 Median NaN NaN NaN 0 0 Median 1.1764 1.0038 NaN 1 0 Median 0.83782 0.89631 32.017 3 0 Median 0.94788 0.82006 9.8857 2 0 Median 0.6571 0.68989 0.79423 2 0 Median 0.91016 0.74886 NaN 1 0 Median 58925000 32761000 26164000 0 0 0 831910 327360 504550 44046000 24147000 19899000 4556400 2266800 2289600 9039000 5814300 3224600 451810 205340 246470 30252 4107 31805 157799;157800;157801;157802;157803;157804;157805;157806;157807 158741;158742;158743;158744;158745;158746;158747 158744 7 SIDISATIPK FSTDSPRLLASPSSRSIDISATIPKFTNTQ SPSSRSIDISATIPKFTNTQITEHYSTCIK R S I P K F 1 0 0 1 0 0 0 0 0 3 0 1 0 0 1 2 1 0 0 0 0 0 10 0 1043.5863 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 81 90 NCAPH Condensin complex subunit 2 yes no 2 0.0061875 49.418 By MS/MS By matching By matching 1 1 1 0.84373 0.83713 5.8838 3 Median 0.82258 0.78328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84373 0.88079 NaN 1 0 Median 0.9606 0.83713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6104400 2599100 3505300 4108500 1602500 2506000 0 0 0 1445600 719480 726140 550200 277070 273130 0 0 0 0 0 0 30253 929 31806 157808;157809;157810 158748 158748 1 SIDLKDKYK WGSPKVTKDGVTVAKSIDLKDKYKNIGAKL GVTVAKSIDLKDKYKNIGAKLVQDVANNTN K S I Y K N 0 0 0 2 0 0 0 0 0 1 1 3 0 0 0 1 0 0 1 0 0 0 9 2 1108.6128 P10809;E7ESH4;E7EXB4;C9JL25;C9JCQ4 P10809 83 91 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 0.0034537 90.657 By MS/MS 1 1.1107 1.1334 NaN 1 Median 1.1107 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12969000 5867600 7101900 12969000 5867600 7101900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30254 1947 31807 157811 158749;158750 158749 2 SIDMSWDSVTMK EDTIRQAFAPFGPIKSIDMSWDSVTMKHKG PIKSIDMSWDSVTMKHKGFAFVEYEVPEAA K S I M K H 0 0 0 2 0 0 0 0 0 1 0 1 2 0 0 3 1 1 0 1 0 0 12 0 1398.6159 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19;H0YCP8 A0A0J9YVP6 132 143 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.00011005 90.827 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 4 1 2 1 1.0947 1.0638 7.1824 10 Median 1.1028 1.0596 NaN 1 0 Median 1.3041 1.1456 NaN 1 0 Median 1.0537 1.0243 11.704 4 1 Median 1.253 1.068 NaN 1 0 Median 1.0614 1.0595 2.4679 2 0 Median 1.2808 1.0761 NaN 1 0 Median 70369000 32256000 38113000 3715800 1745400 1970400 816130 335830 480290 60595000 27948000 32646000 2512200 1082400 1429800 2462500 1047000 1415400 267300 96847 170460 30255 284 31808;31809 157812;157813;157814;157815;157816;157817;157818;157819;157820;157821 158751;158752;158753;158754;158755;158756;158757;158758;158759;158760;158761 158755 140;141 11 SIDPDSIQSALLASGLGSK IRKDHKKNKEKKKKKSIDPDSIQSALLASG DSIQSALLASGLGSKRPSFSSTPVISPAPN K S I S K R 2 0 0 2 0 1 0 2 0 2 3 1 0 0 1 5 0 0 0 0 0 0 19 0 1857.9684 A3KN83 A3KN83 794 812 SBNO1 Protein strawberry notch homolog 1 yes yes 2 0.047148 20.106 By MS/MS By matching 1 1 0.71277 0.66576 42.915 2 Median 0.91357 0.90179 NaN 1 0 Median 0.5561 0.4915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2691800 1453100 1238700 2000800 1047900 952850 691010 405170 285840 0 0 0 0 0 0 0 0 0 0 0 0 30256 501 31810 157822;157823 158762 158762 1 SIDSNPYDTDK CIGTMTIEIDFLQKKSIDSNPYDTDKMAAE LQKKSIDSNPYDTDKMAAEFIQQFNNQAFS K S I D K M 0 0 1 3 0 0 0 0 0 1 0 1 0 0 1 2 1 0 1 0 0 0 11 0 1253.5412 I3L0N3;P46459;I3L0L3 I3L0N3 101 111 NSF Vesicle-fusing ATPase yes no 2 0.00016921 79.974 By MS/MS By MS/MS By MS/MS 1 1 1 1.2312 1.0924 25.235 3 Median 0.82975 0.83316 NaN 1 0 Median 1.2312 1.0924 NaN 1 0 Median 1.2926 1.3795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4409600 2075300 2334400 1365800 695090 670740 1683100 686990 996130 1360700 693180 667520 0 0 0 0 0 0 0 0 0 30257 1272 31811 157824;157825;157826 158763;158764;158765 158765 3 SIDTFFGVK AAQKALAKVDKSGMKSIDTFFGVKNKKKIG DKSGMKSIDTFFGVKNKKKIGKV_______ K S I V K N 0 0 0 1 0 0 0 1 0 1 0 1 0 2 0 1 1 0 0 1 0 0 9 0 1012.5229 Q5TBB1;A0A2R8YGP2;A0A2R8Y6Q6;A0A087WXR7;A0A2R8YCX2;A0A2R8Y459;A0A2R8YEB4 Q5TBB1 296 304 RNASEH2B Ribonuclease H2 subunit B yes no 2 0.0040114 61.999 By MS/MS By matching By MS/MS By matching 1 2 1 2 1.1092 0.98939 7.0769 6 Median 1.0515 0.98358 NaN 1 0 Median 1.1596 0.98887 8.1771 2 0 Median 0.91374 0.87496 NaN 1 0 Median 1.1561 1.0235 3.9542 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7879600 3799300 4080300 3653500 1806500 1847000 780520 314240 466280 2490700 1211600 1279000 954900 466900 488000 0 0 0 0 0 0 30258 69 31812 157827;157828;157829;157830;157831;157832 158766;158767;158768;158769 158769 4 SIDTGMGLER YNREADGILKPLPKKSIDTGMGLERLVSVL PLPKKSIDTGMGLERLVSVLQNKMSNYDTD K S I E R L 0 1 0 1 0 0 1 2 0 1 1 0 1 0 0 1 1 0 0 0 0 0 10 0 1077.5125 P49588 P49588 237 246 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.0043693 67.993 By MS/MS By MS/MS 1 1 1.2059 1.045 NaN 1 Median NaN NaN NaN 0 0 Median 1.2059 1.045 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2914700 1324700 1590000 0 0 0 2914700 1324700 1590000 0 0 0 0 0 0 0 0 0 0 0 0 30259 2385 31813 157833;157834 158770;158771 158771 2 SIEALLEAGQAR QEARAENSQLTERIRSIEALLEAGQARDAQ RIRSIEALLEAGQARDAQDVQASQAEADQQ R S I A R D 3 1 0 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1256.6725 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 959 970 RRBP1 Ribosome-binding protein 1 yes no 2 0.00020783 96.89 By MS/MS By MS/MS By matching By MS/MS 2 5 2 1 1.106 1.0559 21.64 10 Median 1.1867 1.1447 5.0313 2 1 Median 1.0661 0.94302 24.073 5 0 Median 0.91655 1.007 3.173 2 0 Median 1.528 1.306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21127000 9750600 11376000 10605000 4988200 5617300 7828500 3575000 4253500 1935200 906760 1028400 757450 280660 476790 0 0 0 0 0 0 30260 4222 31814 157835;157836;157837;157838;157839;157840;157841;157842;157843;157844 158772;158773;158774;158775;158776 158773 5 SIEAVHEDIR MKDTTLNWKMVDASKSIEAVHEDIRVLSED VDASKSIEAVHEDIRVLSEDAIRTATEKPL K S I I R V 1 1 0 1 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1167.5884 P23919;H7BZ20;H7C312 P23919 183 192 DTYMK Thymidylate kinase yes no 2 0.00041856 108.98 By MS/MS By MS/MS 1 1 1.1278 1.0111 2.7058 2 Median 1.0864 1.0307 NaN 1 0 Median 1.1708 0.99198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15879000 7421200 8457700 13078000 6141600 6936000 2801300 1279700 1521700 0 0 0 0 0 0 0 0 0 0 0 0 30261 2120 31815 157845;157846 158777;158778;158779 158777 3 SIEDFAHSSFQMALSK EEGGGVAMGMYNQDKSIEDFAHSSFQMALS IEDFAHSSFQMALSKGWPLYLSTKNTILKK K S I S K G 2 0 0 1 0 1 1 0 1 1 1 1 1 2 0 4 0 0 0 0 0 0 16 0 1796.8403 O75874 O75874 188 203 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 3 0.025254 16.88 By MS/MS By matching By matching 2 1 1 1.0157 1.0128 20.143 4 Median 0.884 0.84691 1.3907 2 0 Median 1.3998 1.1992 NaN 1 0 Median 1.1611 1.2011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8829700 4354700 4475000 6373300 3334000 3039400 1467600 545560 922090 988670 475140 513530 0 0 0 0 0 0 0 0 0 30262 1701 31816 157847;157848;157849;157850 158780 158780 1 SIEDMTEEAFQK YLESRVEAFLITMEKSIEDMTEEAFQKHIQ MEKSIEDMTEEAFQKHIQALAIRRLDKPKK K S I Q K H 1 0 0 1 0 1 3 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 12 0 1426.6286 P14735;A0A3B3ISG5 P14735 873 884 IDE Insulin-degrading enzyme yes no 2 0.00051621 76.465 By MS/MS 1 1.0251 0.99637 NaN 1 Median 1.0251 0.99637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6832800 3564400 3268400 6832800 3564400 3268400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30263 423 31817 157851 158781;158782 158781 2 SIEDQLQPNSASGSGALEHDPSSIYLR DSVLLGSWLQETDHKSIEDQLQPNSASGSG GSGALEHDPSSIYLRIPAGEAVPGPLPLGV K S I L R I 2 1 1 2 0 2 2 2 1 2 3 0 0 0 2 6 0 0 1 0 0 0 27 0 2870.3682 Q9P2D3 Q9P2D3 737 763 HEATR5B HEAT repeat-containing protein 5B yes yes 3 3.297E-05 30.958 By MS/MS By matching 1 1 0.84129 0.76842 3.1216 2 Median 0.79617 0.75165 NaN 1 0 Median 0.88897 0.78557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7132500 3818100 3314500 6699500 3579800 3119700 433030 238230 194800 0 0 0 0 0 0 0 0 0 0 0 0 30264 4221 31818 157852;157853 158783;158784 158783 2 SIEEAMNEIR KTYGCVPVANKRDTRSIEEAMNEIRAKKRL KRDTRSIEEAMNEIRAKKRLRQSGEELPPT R S I I R A 1 1 1 0 0 0 3 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 10 0 1190.5601 I3L0X5;O75391 I3L0X5 151 160 SPAG7 Sperm-associated antigen 7 yes no 2 0.0010774 68.735 By MS/MS By MS/MS 1 1 1.0649 0.96028 18.51 2 Median NaN NaN NaN 0 0 Median 0.99189 0.84247 NaN 1 0 Median 1.1434 1.0946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6096600 2993600 3103000 0 0 0 1805600 845260 960360 4291000 2148300 2142700 0 0 0 0 0 0 0 0 0 30265 1276 31819 157854;157855 158785;158786 158785 2 SIEEIVR GIGPKRAVDLIQKHKSIEEIVRRLDPNKYP VDLIQKHKSIEEIVRRLDPNKYPVPENWLH K S I V R R 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 7 0 844.46543 P39748;I3L3E9 P39748 255 261 FEN1 Flap endonuclease 1 yes no 2 0.0018683 113.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 1 3 1.083 0.99006 23.697 13 Median 0.97738 0.97099 NaN 1 0 Median 1.1939 1.0399 47.709 3 1 Median 1.0139 1.0435 6.2954 2 0 Median 1.1559 0.99006 17.113 3 0 Median 1.2445 1.2485 NaN 1 1 Median 1.083 0.87917 10.836 3 0 Median 301520000 143950000 157570000 7759700 3951400 3808300 31205000 14649000 16556000 78373000 40724000 37649000 166460000 76851000 89608000 5081200 2397200 2684000 12643000 5375600 7267200 30266 2283 31820 157856;157857;157858;157859;157860;157861;157862;157863;157864;157865;157866;157867;157868 158787;158788;158789;158790;158791;158792;158793;158794;158795;158796;158797;158798;158799;158800;158801;158802;158803 158793 17 SIEEIVRR GIGPKRAVDLIQKHKSIEEIVRRLDPNKYP DLIQKHKSIEEIVRRLDPNKYPVPENWLHK K S I R R L 0 2 0 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 8 1 1000.5665 P39748;I3L3E9 P39748 255 262 FEN1 Flap endonuclease 1 yes no 2 0.0048801 96.492 By MS/MS 3 1.0536 0.9784 3.3017 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0536 0.9784 3.3017 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6824700 2949700 3875000 0 0 0 0 0 0 0 0 0 6824700 2949700 3875000 0 0 0 0 0 0 30267 2283 31821 157869;157870;157871 158804;158805 158805 2 SIEEQLGTEIKPIPSNIDK LAINLITYDDRFNLKSIEEQLGTEIKPIPS QLGTEIKPIPSNIDKSLYVAEYHSEPVEDE K S I D K S 0 0 1 1 0 1 3 1 0 4 1 2 0 0 2 2 1 0 0 0 0 0 19 1 2110.1158 P26196 P26196 448 466 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 2.5878E-09 85.808 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.73157 0.78018 18.16 5 Median NaN NaN NaN 0 0 Median 0.83412 0.78433 NaN 1 0 Median 0.59516 0.62162 1.5779 2 0 Median 0.95487 0.95446 NaN 1 0 Median 0.73157 0.78018 NaN 1 0 Median NaN NaN NaN 0 0 Median 40417000 23388000 17029000 0 0 0 2659400 1434600 1224800 33564000 20038000 13526000 1896000 941160 954800 2297700 973660 1324100 0 0 0 30268 2140 31822 157872;157873;157874;157875;157876 158806;158807;158808;158809;158810 158806 5 SIEGTADDEEEGVSPDTAIR IDSEAISALVKLMNKSIEGTADDEEEGVSP ADDEEEGVSPDTAIRSGLELLKVLSFTHPT K S I I R S 2 1 0 3 0 0 4 2 0 2 0 0 0 0 1 2 2 0 0 1 0 0 20 0 2089.9288 Q29RF7 Q29RF7 638 657 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 7.8952E-60 227.63 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 0.82631 0.79695 4.2979 6 Median NaN NaN NaN 0 0 Median 0.91249 0.80047 NaN 1 0 Median 0.72246 0.78433 6.6648 2 0 Median 0.94834 0.81805 4.3191 2 0 Median 0.73442 0.77162 NaN 1 0 Median NaN NaN NaN 0 0 Median 78857000 41795000 37063000 0 0 0 377660 200190 177470 64580000 35099000 29480000 10383000 4835600 5547400 3516700 1659300 1857400 0 0 0 30269 3003 31823 157877;157878;157879;157880;157881;157882 158811;158812;158813;158814;158815;158816;158817;158818 158811 8 SIEIESSDVIR ______________________________ ______________________________ M S I I R L 0 1 0 1 0 0 2 0 0 3 0 0 0 0 0 3 0 0 0 1 0 0 11 0 1246.6405 Q2TAY7 Q2TAY7 2 12 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.00016484 90.629 By MS/MS 2 1.107 1.1262 4.5097 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.107 1.1262 4.5097 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10354000 4935300 5418200 0 0 0 0 0 0 10354000 4935300 5418200 0 0 0 0 0 0 0 0 0 30270 3005 31824 157883;157884 158819;158820;158821;158822 158820 4 SIEIKDELKK QDPLNETHLQTTSGRSIEIKDELKKKKNLN TTSGRSIEIKDELKKKKNLNRSGKRGRPSG R S I K K K 0 0 0 1 0 0 2 0 0 2 1 3 0 0 0 1 0 0 0 0 0 0 10 2 1201.6918 Q7Z6I8;H0YAE0 Q7Z6I8 71 80 C5orf24 UPF0461 protein C5orf24 yes no 3 0.052463 18.268 By matching By MS/MS By MS/MS 1 2 1 1.0657 1.1126 17.323 4 Median 1.0347 0.99226 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93009 1.0533 23.937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3485 1.2627 NaN 1 0 Median 4919800 2091000 2828800 747450 319510 427950 0 0 0 2431800 1073900 1357900 0 0 0 0 0 0 1740500 697590 1042900 30271 3252 31825 157885;157886;157887;157888 158823;158824 158824 2 SIEIPRPVDGVEVPGCGK VEDVRDECSKYGLVKSIEIPRPVDGVEVPG IPRPVDGVEVPGCGKIFVEFTSVFDCQKAM K S I G K I 0 1 0 1 1 0 2 3 0 2 0 1 0 0 3 1 0 0 0 3 0 0 18 1 1907.9775 P26368;K7ENG2 P26368 414 431 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3 0.0014009 27.714 By MS/MS 1 0.3777 0.38934 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3777 0.38934 NaN 1 0 Median NaN NaN NaN 0 0 Median 5650100 4448000 1202100 0 0 0 0 0 0 0 0 0 0 0 0 5650100 4448000 1202100 0 0 0 30272 2143 31826 157889 158825 158825 1 SIELFYK LLAHCGRPQTECRHKSIELFYKFVPLLPGN PQTECRHKSIELFYKFVPLLPGNRSPNLWL K S I Y K F 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 7 0 898.48002 P78527 P78527 1187 1193 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 1;2 0.013989 75.311 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 2 2 1 1.196 1.1731 52.529 11 Median 0.98624 0.98975 NaN 1 0 Median 1.3664 1.2066 2.324 2 0 Median 0.94475 1.004 87.491 3 0 Plateau 1.3434 1.3081 15.401 2 0 Median 1.1022 1.1436 10.367 2 0 Median 1.5329 1.2809 NaN 1 0 Median 164490000 81994000 82495000 27711000 14119000 13593000 22203000 9080100 13123000 96136000 50650000 45485000 8850900 3667100 5183800 9117500 4296000 4821500 470120 181580 288540 30273 2647 31827 157890;157891;157892;157893;157894;157895;157896;157897;157898;157899;157900;157901 158826;158827;158828;158829;158830;158831;158832;158833;158834;158835;158836 158833 11 SIETAYPGR S I G R 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 1 1 0 1 0 0 0 9 0 992.49271 REV__A0A0U1RR07 yes yes 2 0.018988 40.268 By MS/MS 1 1.0665 0.88285 NaN 1 Median NaN NaN NaN 0 0 Median 1.0665 0.88285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47525000 23178000 24348000 0 0 0 47525000 23178000 24348000 0 0 0 0 0 0 0 0 0 0 0 0 + 30274 4510 31828 157902 158837 158837 1 SIEVIENR GYNSQYDEAVAQFSKSIEVIENRMAVLNEQ AVAQFSKSIEVIENRMAVLNEQVKEAEGSS K S I N R M 0 1 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 8 0 958.50836 P49321;Q5T624;H0YDS9;E9PRH9;H0YF33 P49321 610 617 NASP Nuclear autoantigenic sperm protein yes no 2 0.0020287 140.98 By MS/MS By MS/MS By MS/MS 2 3 1 0.97181 0.87695 25.401 6 Median 1.0967 1.0445 4.6173 2 0 Median 1.1549 0.97333 30.678 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66547 0.67043 NaN 1 1 Median NaN NaN NaN 0 0 Median 137870000 60964000 76905000 51559000 24064000 27495000 83899000 35897000 48001000 0 0 0 0 0 0 2411200 1002200 1409000 0 0 0 30275 2376 31829 157903;157904;157905;157906;157907;157908 158838;158839;158840;158841;158842;158843;158844;158845;158846 158844 9 SIEVYSAYNNVK VLLAQCVVYFARAPKSIEVYSAYNNVKACL APKSIEVYSAYNNVKACLRNHQGPLPPVPL K S I V K A 1 0 2 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 2 2 0 0 12 0 1385.6827 Q96S55 Q96S55 590 601 WRNIP1 ATPase WRNIP1 yes yes 2 9.5523E-05 91.867 By MS/MS 1 1.1535 1.0932 NaN 1 Median 1.1535 1.0932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4431700 2129200 2302500 4431700 2129200 2302500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30276 3730 31830 157909 158847 158847 1 SIFASPESVTGK NNRAYSKNKKGQVKRSIFASPESVTGKVGV VKRSIFASPESVTGKVGVGTCGIADKPMTQ R S I G K V 1 0 0 0 0 0 1 1 0 1 0 1 0 1 1 3 1 0 0 1 0 0 12 0 1221.6241 O75940 O75940 197 208 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 2 0.00027495 83.438 By matching By MS/MS By MS/MS By MS/MS 1 3 2 2 1.0071 0.93211 51.824 8 Median 1.1631 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94886 0.89108 23.065 3 0 Median 0.613 0.52446 76.313 2 0 Median 1.4109 1.3485 47.208 2 0 Median NaN NaN NaN 0 0 Median 62476000 31059000 31418000 12685000 6048100 6637300 0 0 0 21669000 10863000 10806000 5117100 2635900 2481200 23005000 11512000 11493000 0 0 0 30277 1710 31831 157910;157911;157912;157913;157914;157915;157916;157917 158848;158849;158850;158851;158852;158853;158854 158851 7 SIFDFSALK VEIVDSVEAYATMLRSIFDFSALKELLSGP YATMLRSIFDFSALKELLSGPNRLKIRIDA R S I L K E 1 0 0 1 0 0 0 0 0 1 1 1 0 2 0 2 0 0 0 0 0 0 9 0 1026.5386 P36871;A0A3B3ITK7 P36871 201 209 PGM1 Phosphoglucomutase-1 yes no 2 0.029888 36.395 By MS/MS By matching By matching By matching 2 2 1 1 1.1767 1.0879 5.4832 6 Median 1.1008 1.0701 4.8059 2 0 Median 1.2716 1.1093 6.0353 2 0 Median 1.0606 1.0691 NaN 1 0 Median 1.346 1.1934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9954500 4425100 5529400 4955400 2290700 2664700 4013100 1656900 2356200 918920 448040 470880 67055 29419 37637 0 0 0 0 0 0 30278 2262 31832 157918;157919;157920;157921;157922;157923 158855 158855 1 SIFDHIK ASTLVHSVKKEQEFRSIFDHIKLPQASKST VKKEQEFRSIFDHIKLPQASKSTSESFIQH R S I I K L 0 0 0 1 0 0 0 0 1 2 0 1 0 1 0 1 0 0 0 0 0 0 7 0 858.45995 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 587 593 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.030804 49.59 By MS/MS 2 1.0101 1.0454 1.3766 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0101 1.0454 1.3766 2 0 Median NaN NaN NaN 0 0 Median 18403000 8841300 9562000 0 0 0 0 0 0 0 0 0 0 0 0 18403000 8841300 9562000 0 0 0 30279 4175 31833 157924;157925 158856;158857 158857 2 SIFEMYEPSELESSHLTDQDNEIR RVRPKKTTKKRVSRRSIFEMYEPSELESSH ELESSHLTDQDNEIRATDLPERFQLRSIPV R S I I R A 0 1 1 2 0 1 5 0 1 2 2 0 1 1 1 4 1 0 1 0 0 0 24 0 2868.276 Q7KZ85 Q7KZ85 267 290 SUPT6H Transcription elongation factor SPT6 yes yes 3 4.8561E-08 45.011 By MS/MS By matching By MS/MS 1 1 1 0.82655 0.89342 16.88 3 Plateau 1.0174 1.008 NaN 1 0 Median 0.82655 0.72818 NaN 1 0 Median 0.71279 0.7919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5635700 2925200 2710400 2667900 1232800 1435100 499740 271070 228670 2468000 1421400 1046700 0 0 0 0 0 0 0 0 0 30280 3213 31834 157926;157927;157928 158858;158859;158860;158861 158859 4 SIFGEDALANVSIEKPIHQGPDAAVTGHIR LSGYCGFMAANLYARSIFGEDALANVSIEK PIHQGPDAAVTGHIRIRAKSQGMALSLGDK R S I I R I 4 1 1 2 0 1 2 3 2 4 1 1 0 1 2 2 1 0 0 2 0 0 30 1 3141.6207 P53618 P53618 899 928 COPB1 Coatomer subunit beta yes yes 4 0.0064162 21.925 By MS/MS 1 0.67955 0.7073 NaN 1 Median 0.67955 0.7073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5667200 2955800 2711500 5667200 2955800 2711500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30281 2472 31835 157929 158862;158863 158862 2 SIFLFLDR DRCWQNHCRQMIMIRSIFLFLDRTYVLQNS RQMIMIRSIFLFLDRTYVLQNSMLPSIWDM R S I D R T 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q13620;K4DI93;A6NE76;Q13619;A0A0A0MR50;A0A087WWN2 Q13620 305 312 CUL4B;CUL4A Cullin-4B;Cullin-4A no no 2 0.036811 37.558 By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1.0816 1.0862 30.127 6 Median 1.0495 1.0431 2.5802 2 0 Median 0.99424 0.89326 NaN 1 0 Median 1.0762 1.1107 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6309 1.7396 NaN 1 0 Median 2.0969 1.8485 NaN 1 0 Median 5976500 2740200 3236400 3812900 1850300 1962700 187030 95768 91261 366500 176450 190050 0 0 0 1518600 587170 931380 91499 30519 60980 30282 1358;2832 31836 157930;157931;157932;157933;157934;157935 158864;158865 158864 2 SIFLVAHR VMMGILTIYTSYKEKSIFLVAHRKDPTGMD YTSYKEKSIFLVAHRKDPTGMDPDDIWQLS K S I H R K 1 1 0 0 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 0 8 0 941.54469 A0A087WUC6;E9PI68;Q15005;E9PL01;H0YE04 A0A087WUC6 139 146 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.00041411 154.11 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2769 1.1439 4.7665 6 Median 1.1506 1.1236 3.0028 2 0 Median 1.3996 1.1727 3.9833 2 0 Median 1.2572 1.2056 NaN 1 0 Median 1.2969 1.0718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41124000 17108000 24015000 28514000 12080000 16434000 5827400 2103400 3724000 5583000 2389400 3193600 1198800 535150 663620 0 0 0 0 0 0 30283 29 31837 157936;157937;157938;157939;157940;157941 158866;158867;158868;158869;158870;158871 158866 6 SIFQHIQSAQSQR CRDLVHSNKKEQEFRSIFQHIQSAQSQRSP FRSIFQHIQSAQSQRSPSELFAQHIVTIVH R S I Q R S 1 1 0 0 0 4 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 13 0 1528.7746 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 609 621 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2;3 8.4448E-07 134.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 10 5 8 1.4202 1.2598 24.127 33 Median 1.3804 1.3474 9.6338 2 0 Median 1.28 1.071 8.231 3 0 Median 1.2134 1.3086 42.758 5 1 Median 1.4465 1.2389 13.535 10 2 Median 1.3943 1.4063 23.589 5 2 Median 1.5478 1.2481 21.99 8 1 Median 485800000 209500000 276300000 37856000 16184000 21671000 14360000 6203200 8157200 80145000 38253000 41892000 48660000 19150000 29510000 255790000 110360000 145440000 48981000 19354000 29627000 30284 439 31838 157942;157943;157944;157945;157946;157947;157948;157949;157950;157951;157952;157953;157954;157955;157956;157957;157958;157959;157960;157961;157962;157963;157964;157965;157966;157967;157968;157969;157970;157971;157972;157973;157974 158872;158873;158874;158875;158876;158877;158878;158879;158880;158881;158882;158883;158884;158885;158886;158887;158888;158889;158890;158891;158892;158893;158894;158895;158896;158897;158898;158899;158900;158901;158902;158903;158904;158905;158906;158907;158908;158909;158910;158911;158912;158913 158895 42 SIFSGIGSTAEPVSQSTTSDYQWDVSR ANTNGKDWGRSWSDRSIFSGIGSTAEPVSQ VSQSTTSDYQWDVSRNQPYIDDEWSGLNGL R S I S R N 1 1 0 2 0 2 1 2 0 2 0 0 0 1 1 7 3 1 1 2 0 0 27 0 2904.3414 Q86UE4;H0YBJ8 Q86UE4 344 370 MTDH Protein LYRIC yes no 3 1.8628E-13 55.049 By MS/MS 2 0.68321 0.67364 17.552 2 Median 0.68321 0.67364 17.552 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6190600 3175200 3015400 6190600 3175200 3015400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30285 3276 31839 157975;157976 158914;158915 158914 2 SIFSLDTPEQYQEAFQK GTEGPFVERVTAVWKSIFSLDTPEQYQEAF FSLDTPEQYQEAFQKLQNIKYPSATNNTPA K S I Q K L 1 0 0 1 0 3 2 0 0 1 1 1 0 2 1 2 1 0 1 0 0 0 17 0 2029.9633 Q8TEQ6 Q8TEQ6 1166 1182 GEMIN5 Gem-associated protein 5 yes yes 2 0.00033794 45.077 By MS/MS By matching 1 1 0.76999 0.80705 14.206 2 Median 0.92574 0.89233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64044 0.72992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7855800 3868100 3987700 7004800 3454100 3550700 0 0 0 851010 413990 437020 0 0 0 0 0 0 0 0 0 30286 3478 31840 157977;157978 158916 158916 1 SIFTPTNQIR ______________________________ ______________________________ M S I I R L 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 1 2 0 0 0 0 0 10 0 1175.6299 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 2 11 SBDS Ribosome maturation protein SBDS yes no 2 0.00073131 97.635 By MS/MS By MS/MS By matching By matching 3 1 1 1 0.99527 0.94519 80.683 4 Median 0.90993 0.85483 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0886 1.0451 NaN 1 0 Median 1.5254 1.2105 NaN 1 0 Median 0.1977 0.20968 NaN 1 0 Median NaN NaN NaN 0 0 Median 52962000 27013000 25949000 348920 139030 209890 0 0 0 49744000 24622000 25122000 500430 181500 318920 2368400 2070700 297710 0 0 0 30287 100 31841 157979;157980;157981;157982;157983;157984 158917;158918;158919;158920;158921 158920 5 SIFVLPNDDLKK ALPSYRKFVTKSSKKSIFVLPNDDLKKLAR SKKSIFVLPNDDLKKLARKGGIREVPYFNY K S I K K L 0 0 1 2 0 0 0 0 0 1 2 2 0 1 1 1 0 0 0 1 0 0 12 1 1387.7711 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1845 1856 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 0.00075038 74.841 By MS/MS By matching By matching 4 3 1 0.84159 0.96209 10.066 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81911 0.94471 3.4393 4 0 Median 1.1183 1.0705 3.9016 3 0 Median 0.79882 0.83619 NaN 1 0 Median NaN NaN NaN 0 0 Median 49070000 27781000 21289000 0 0 0 0 0 0 47105000 26781000 20324000 610200 283620 326580 1354400 716030 638370 0 0 0 30288 2762 31842 157985;157986;157987;157988;157989;157990;157991;157992 158922;158923;158924;158925;158926 158923 4 SIFYVPDMKPSMFDVSR RYTLHYKTDAPLNIRSIFYVPDMKPSMFDV FYVPDMKPSMFDVSRELGSSVALYSRKVLI R S I S R E 0 1 0 2 0 0 0 0 0 1 0 1 2 2 2 3 0 0 1 2 0 0 17 1 2017.9642 I3L0K7;I3L239;Q12931 Q12931 341 357 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 6.696E-06 63.145 By MS/MS By MS/MS By MS/MS 5 2 2 0.8504 0.85702 12.641 9 Median 0.8488 0.85702 13.27 5 0 Median 0.98523 0.90416 10.824 2 0 Median 0.75475 0.80127 17.633 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51014000 26983000 24031000 33198000 18140000 15058000 9578700 4274700 5304000 8237400 4567900 3669400 0 0 0 0 0 0 0 0 0 30289 2771;1269 31843 157993;157994;157995;157996;157997;157998;157999;158000;158001 158927;158928;158929;158930;158931;158932;158933;158934;158935;158936;158937;158938;158939;158940;158941 158932 15 SIGASPNPFSVHTATAVPSGK PQITPPPVMILKKKRSIGASPNPFSVHTAT NPFSVHTATAVPSGKIASPVSRKEPPLTPV R S I G K I 3 0 1 0 0 0 0 2 1 1 0 1 0 1 3 4 2 0 0 2 0 0 21 0 2024.0327 A0A087WU64;A6NMQ1;P09884 A0A087WU64 186 206 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2;3 8.5693E-12 63.69 By MS/MS By MS/MS By MS/MS 3 2 1 0.67562 0.64397 9.387 5 Median 0.6328 0.61992 5.3828 2 1 Median 0.82519 0.72656 0.88169 2 0 Median NaN NaN NaN 0 0 Median 0.67562 0.61089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55980000 32989000 22992000 45349000 26808000 18540000 7992900 4584800 3408100 0 0 0 2638800 1595600 1043200 0 0 0 0 0 0 30290 26 31844 158002;158003;158004;158005;158006;158007 158942;158943;158944;158945;158946;158947;158948;158949 158943 8 SIGESVPEPR NDELYLNGASVLPHKSIGESVPEPRIIM__ VLPHKSIGESVPEPRIIM____________ K S I P R I 0 1 0 0 0 0 2 1 0 1 0 0 0 0 2 2 0 0 0 1 0 0 10 0 1069.5404 Q9Y5P6 Q9Y5P6 348 357 GMPPB Mannose-1-phosphate guanyltransferase beta yes yes 2 0.014222 39.022 By MS/MS By matching 1 1 1.0761 1.0827 3.3112 2 Median 1.0481 1.0576 NaN 1 0 Median 1.1048 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3031900 1604300 1427600 1933400 933530 999900 1098500 670820 427690 0 0 0 0 0 0 0 0 0 0 0 0 30291 4465 31845 158008;158009 158950 158950 1 SIGEYDVLR PPDVLRWVELAKLYRSIGEYDVLRGIFTSE LAKLYRSIGEYDVLRGIFTSEIGTKQITQS R S I L R G 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1050.5346 P78527 P78527 2932 2940 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00040442 132.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 5 1.4218 1.19 19.351 18 Median 0.98074 0.93223 5.0885 2 0 Median 1.4074 1.1567 1.9281 2 0 Median 0.95783 0.98668 9.3805 3 0 Median 1.5192 1.2963 3.2564 3 0 Median 1.0924 1.1242 35.638 3 0 Median 1.602 1.3654 9.8974 5 0 Median 564460000 268730000 295720000 103250000 50759000 52487000 80329000 31881000 48449000 278660000 139410000 139240000 28237000 11302000 16935000 59785000 29807000 29979000 14202000 5569700 8631900 30292 2647 31846 158010;158011;158012;158013;158014;158015;158016;158017;158018;158019;158020;158021;158022;158023;158024;158025;158026;158027 158951;158952;158953;158954;158955;158956;158957;158958;158959;158960;158961;158962;158963;158964;158965;158966;158967;158968;158969;158970;158971;158972;158973;158974;158975;158976;158977 158955 27 SIGSAVDQGNESIVAK RQFVDGPPGPVKKTRSIGSAVDQGNESIVA IGSAVDQGNESIVAKTTVTVPNDGGPIEAV R S I A K T 2 0 1 1 0 1 1 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 16 0 1573.7948 Q9H0H5;F8VRD2;F8W1E5 Q9H0H5 203 218 RACGAP1 Rac GTPase-activating protein 1 yes no 2 4.5304E-14 170.04 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0316 0.89358 19.64 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90499 0.89358 NaN 1 0 Median 1.0419 0.89013 12.167 2 0 Median 1.3956 1.3365 NaN 1 0 Median 1.0316 0.85488 NaN 1 0 Median 48355000 24592000 23763000 0 0 0 0 0 0 42552000 21790000 20761000 2450700 1119800 1330800 2141200 1087100 1054100 1211900 595270 616620 30293 3926 31847 158028;158029;158030;158031;158032 158978;158979;158980;158981 158979 4 SIGTANRPMGAGEALR WGPLRGWPLELLCEKSIGTANRPMGAGEAL IGTANRPMGAGEALRRVLECLASGIVMPDG K S I L R R 3 2 1 0 0 0 1 3 0 1 1 0 1 0 1 1 1 0 0 0 0 0 16 1 1599.8151 Q12906;K7EQR9 Q12906 258 273 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 1.4665E-11 147.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 8 9 10 13 0.98172 0.95799 37.087 47 Median 0.98172 1.0066 16.864 3 1 Median 0.99776 0.96193 24.215 5 0 Median 0.80925 0.89858 21.078 8 1 Median 1.1643 1.0564 13.709 9 1 Median 0.83747 0.92826 67.973 10 0 Median 1.1615 1.0048 26.898 12 2 Median 737510000 383350000 354160000 38216000 19417000 18799000 46502000 23489000 23013000 215790000 113340000 102450000 93571000 43805000 49767000 276580000 151840000 124740000 66855000 31460000 35396000 30294 2769 31848;31849 158033;158034;158035;158036;158037;158038;158039;158040;158041;158042;158043;158044;158045;158046;158047;158048;158049;158050;158051;158052;158053;158054;158055;158056;158057;158058;158059;158060;158061;158062;158063;158064;158065;158066;158067;158068;158069;158070;158071;158072;158073;158074;158075;158076;158077;158078;158079;158080 158982;158983;158984;158985;158986;158987;158988;158989;158990;158991;158992;158993;158994;158995;158996;158997;158998;158999;159000;159001;159002;159003;159004;159005;159006;159007;159008;159009;159010;159011;159012;159013;159014;159015;159016;159017;159018;159019;159020;159021;159022;159023;159024;159025;159026;159027;159028;159029;159030;159031;159032;159033 158990 1490 52 SIGTANRPMGAGEALRR WGPLRGWPLELLCEKSIGTANRPMGAGEAL GTANRPMGAGEALRRVLECLASGIVMPDGS K S I R R V 3 3 1 0 0 0 1 3 0 1 1 0 1 0 1 1 1 0 0 0 0 0 17 2 1755.9162 Q12906;K7EQR9 Q12906 258 274 ILF3 Interleukin enhancer-binding factor 3 yes no 3;4 3.9169E-06 80.632 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 1 3 11 6 0.94284 1.0774 26.336 24 Median 1.0572 1.0628 12.026 3 0 Median 1.6253 1.6408 NaN 1 0 Median 0.90034 1.0083 6.5208 3 0 Median NaN NaN NaN 0 0 Median 0.8933 1.1239 20.834 11 0 Median 1.013 1.0406 41.854 6 0 Median 331470000 164100000 167370000 19228000 9017200 10211000 3782200 1407300 2374900 43619000 21666000 21952000 0 0 0 224790000 113810000 110990000 40044000 18203000 21841000 30295 2769 31850 158081;158082;158083;158084;158085;158086;158087;158088;158089;158090;158091;158092;158093;158094;158095;158096;158097;158098;158099;158100;158101;158102;158103;158104 159034;159035;159036;159037;159038;159039;159040;159041;159042;159043;159044;159045;159046;159047;159048;159049;159050;159051;159052;159053;159054;159055;159056;159057 159055 24 SIGTGGIQDLK MILQRYYDSKNHQKRSIGTGGIQDLKERIR HQKRSIGTGGIQDLKERIRQRTNLPLGPSI R S I L K E 0 0 0 1 0 1 0 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 0 1087.5873 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 313 323 EXOC5 Exocyst complex component 5 yes no 2 0.02672 68.371 By MS/MS By matching 1 1 1.5333 1.6282 110.17 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72266 0.74714 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.2531 3.5483 NaN 1 0 Median NaN NaN NaN 0 0 Median 9723800 5610400 4113400 0 0 0 0 0 0 7104800 5051400 2053400 0 0 0 2619000 558930 2060000 0 0 0 30296 181 31851 158105;158106 159058 159058 0 SIGTGGIQDLKER MILQRYYDSKNHQKRSIGTGGIQDLKERIR KRSIGTGGIQDLKERIRQRTNLPLGPSIDT R S I E R I 0 1 0 1 0 1 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 13 1 1372.731 F8W9B8;A0A0A0MSI8;O00471 F8W9B8 313 325 EXOC5 Exocyst complex component 5 yes no 3 0.038404 31.526 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30297 181 31852 158107 159059 159059 1 SIGVYDVVELK FSWWTTDQQLIQVIRSIGVYDVVELKFAEN QVIRSIGVYDVVELKFAENRANGQSKGYAE R S I L K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 1 3 0 0 11 0 1220.6653 Q8N684;F5H669;F5H6M0;F5H047;J3QT54;C9J286;C9J323;C9JM38 Q8N684 104 114 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.00016921 79.974 By MS/MS By matching By matching 2 1 2 1.128 1.0762 13.201 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0793 1.1192 20.6 2 0 Median NaN NaN NaN 0 0 Median 1.128 1.0762 NaN 1 0 Median 1.2379 1.0396 14.77 2 0 Median 67109000 31643000 35465000 0 0 0 0 0 0 62004000 29664000 32339000 0 0 0 3354300 1223700 2130500 1750800 755150 995630 30298 3385 31853 158108;158109;158110;158111;158112 159060;159061 159061 2 SIHEIPREELR PAHEGLVATVKEAGRSIHEIPREELRHTPE EAGRSIHEIPREELRHTPELPLAPRPLKEG R S I L R H 0 2 0 0 0 0 3 0 1 2 1 0 0 0 1 1 0 0 0 0 0 0 11 1 1377.7365 C9J7T7;A0A384DVL6;C9JE98;C9J0Q5;Q9Y618;C9JQE8 C9J7T7 972 982 NCOR2 Nuclear receptor corepressor 2 yes no 3 0.0074004 33.961 By matching By MS/MS 1 2 0.97012 0.89536 19.365 3 Median NaN NaN NaN 0 0 Median 1.0474 0.89536 NaN 1 0 Median 0.87161 1.027 24.992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4608400 2531500 2076900 0 0 0 516240 252200 264040 4092100 2279300 1812900 0 0 0 0 0 0 0 0 0 30299 409 31854 158113;158114;158115 159062;159063 159063 2 SIHELSVEQQLYYK APPLLEGAPLRLKPRSIHELSVEQQLYYKE RSIHELSVEQQLYYKEITEACVGSCEAKRA R S I Y K E 0 0 0 0 0 2 2 0 1 1 2 1 0 0 0 2 0 0 2 1 0 0 14 0 1735.8781 J3KR72;P49848;C9JFL8;C9JTY6 J3KR72 269 282 TAF6 Transcription initiation factor TFIID subunit 6 yes no 3 0.0091806 37.793 By MS/MS 1 0.82474 0.83877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82474 0.83877 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10436000 6112000 4324200 0 0 0 0 0 0 10436000 6112000 4324200 0 0 0 0 0 0 0 0 0 30300 1323 31855 158116 159064 159064 1 SIIEGPIIK PRGEHTLQVKAIYNKSIIEGPIIKLMILPD KAIYNKSIIEGPIIKLMILPDPEKPVRLNV K S I I K L 0 0 0 0 0 0 1 1 0 4 0 1 0 0 1 1 0 0 0 0 0 0 9 0 968.59063 A6NHR9;J3KTL8 A6NHR9 1350 1358 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.003417 65.252 By matching By matching By MS/MS By MS/MS By matching By matching 2 2 1 1 3 1 0.8081 0.85165 27.235 10 Median 0.87066 0.83931 17.666 2 0 Median 0.61915 0.57946 53.916 2 0 Median 0.77607 0.85492 NaN 1 0 Median 1.2297 1.1142 NaN 1 0 Median 0.77598 0.83528 4.4955 3 0 Median 1.0293 0.86631 NaN 1 0 Median 54037000 29636000 24401000 4193500 2290600 1903000 3875800 2041900 1833900 19775000 10677000 9098700 1851200 823140 1028100 22631000 12846000 9784500 1709900 957300 752650 30301 518 31856 158117;158118;158119;158120;158121;158122;158123;158124;158125;158126 159065;159066;159067;159068 159065 4 SIIFANYIAR VLLMGKSGSGKTSMRSIIFANYIARDTRRL KTSMRSIIFANYIARDTRRLGATIDVEHSH R S I A R D 2 1 1 0 0 0 0 0 0 3 0 0 0 1 0 1 0 0 1 0 0 0 10 0 1166.6448 Q7L523;Q5VZM0;Q5VZM2 Q7L523 25 34 RRAGA;RRAGB Ras-related GTP-binding protein A;Ras-related GTP-binding protein B yes no 2 0.011836 42.109 By MS/MS By matching By MS/MS 3 1 1 1.1364 1.0891 47.455 5 Median 1.1441 1.1049 59.201 3 0 Median 0.67239 0.59356 NaN 1 0 Median 1.1364 1.0891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13815000 6569400 7245900 11604000 5454700 6149800 898450 506160 392290 1312400 608620 703760 0 0 0 0 0 0 0 0 0 30302 3223 31857 158127;158128;158129;158130;158131 159069;159070;159071 159069 3 SIIGMGTGAGAYILTR LAEMLPGVLQQFGLKSIIGMGTGAGAYILT IIGMGTGAGAYILTRFALNNPEMVEGLVLI K S I T R F 2 1 0 0 0 0 0 4 0 3 1 0 1 0 0 1 2 0 1 0 0 0 16 0 1579.8392 Q92597;E5RIR1;E5RGM5;E5RIV1;E5RIM2;E5RG99 Q92597 133 148 NDRG1 Protein NDRG1 yes no 2 9.6987E-10 116.54 By MS/MS By MS/MS 3 2 1.4189 1.3672 108.35 5 Median 1.3336 1.2947 114.98 3 0 Median 2.4722 2.2668 71.505 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27898000 9734200 18163000 20236000 8387200 11849000 7661800 1347000 6314900 0 0 0 0 0 0 0 0 0 0 0 0 30303 3540 31858 158132;158133;158134;158135;158136 159072;159073;159074 159072 3 SIIGVIPYFPYSK ELLIMVYACKTSCAKSIIGVIPYFPYSKQC AKSIIGVIPYFPYSKQCKMRKRGSIVSKLL K S I S K Q 0 0 0 0 0 0 0 1 0 3 0 1 0 1 2 2 0 0 2 1 0 0 13 0 1482.8123 O60256;E7EPA1;C9JJS3;C9K0K7;C9JDU5;C9JDH0;E7EW35 O60256 103 115 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 0.00054372 70.977 By MS/MS By MS/MS By matching 1 1 1 0.81631 0.77405 11.905 3 Median 0.75914 0.70801 NaN 1 0 Median 0.89758 0.77405 NaN 1 0 Median 0.81631 0.89627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10918000 6309700 4608300 8240300 4745100 3495200 2167000 1287500 879550 510660 277100 233560 0 0 0 0 0 0 0 0 0 30304 1607 31859 158137;158138;158139 159075;159076;159077;159078;159079;159080 159079 6 SIIKEPESAAEAVK CHHFFVVLSEADSKKSIIKEPESAAEAVKL KSIIKEPESAAEAVKLAFQQKPPPPPKKIY K S I V K L 3 0 0 0 0 0 3 0 0 2 0 2 0 0 1 2 0 0 0 1 0 0 14 1 1470.793 O76031;H0YK07;H0YM48 O76031 145 158 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes no 2;3 5.1359E-05 89.805 By MS/MS By MS/MS By matching 2 2 2 1.0025 0.93635 9.417 6 Median 0.96162 0.90909 7.6597 2 0 Median 1.0314 0.96629 15.749 2 0 Median NaN NaN NaN 0 0 Median 1.0542 0.97339 8.9657 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19520000 9767800 9752400 8777800 4505300 4272500 6549400 3326000 3223400 0 0 0 4193000 1936500 2256500 0 0 0 0 0 0 30305 1718 31860 158140;158141;158142;158143;158144;158145 159081;159082 159081 2 SIILEGFK ______________________________ ______________________________ K S I F K S 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 905.52222 O95347 O95347 5 12 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0074447 67.032 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.1936 1.1497 27.332 7 Median 1.1788 1.1497 NaN 1 0 Median 1.1099 0.94398 NaN 1 0 Median 1.2402 1.3305 NaN 1 0 Median 1.1227 0.9442 NaN 1 0 Median 1.672 1.7636 10.438 2 0 Median 1.1936 1.0431 NaN 1 0 Median 16010000 7286200 8723700 5067500 2507500 2560000 91773 37837 53936 7559800 3357400 4202400 1476100 706860 769250 1706900 621710 1085200 107900 54940 52955 30306 1766 31861 158146;158147;158148;158149;158150;158151;158152 159083;159084;159085;159086;159087;159088 159084 6 SIILNHVIR KRQDMANAFAQKHLRSIILNHVIRGNRPIK AQKHLRSIILNHVIRGNRPIKTEMAHQLYV R S I I R G 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1063.6502 Q5JVZ5;Q96JJ3;Q5JVZ8;Q5JVZ4 Q5JVZ5 263 271 ELMO2 Engulfment and cell motility protein 2 yes no 2 0.0018414 77.058 By matching By MS/MS By MS/MS 1 1 1 1.0527 1.0407 6.5767 3 Plateau NaN NaN NaN 0 0 Median 1.0527 0.95856 NaN 1 0 Median 1.0372 1.0892 NaN 1 0 Median 1.154 0.99442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7841600 3762900 4078700 0 0 0 480270 232810 247460 4726200 2240300 2486000 2635100 1289800 1345300 0 0 0 0 0 0 30307 3058 31862 158153;158154;158155 159089;159090 159089 2 SIIQEVAR VIDEKNTSVEHTRLKSIIQEVARDYRDLFH VEHTRLKSIIQEVARDYRDLFHRDFQFGHM K S I A R D 1 1 0 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 8 0 914.51853 Q96JJ7 Q96JJ7 268 275 TMX3 Protein disulfide-isomerase TMX3 yes yes 2 0.019915 67.032 By MS/MS 1 0.68007 0.652 NaN 1 Median 0.68007 0.652 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10004000 6704500 3300000 10004000 6704500 3300000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30308 3685 31863 158156 159091 159091 1 SIIQSAQQDSIK EFAIMQTPAGELYDKSIIQSAQQDSIKKAN YDKSIIQSAQQDSIKKANMKRENKAYSFKE K S I I K K 1 0 0 1 0 3 0 0 0 3 0 1 0 0 0 3 0 0 0 0 0 0 12 0 1316.6936 Q92616 Q92616 777 788 GCN1L1 Translational activator GCN1 yes yes 2 6.42E-06 140.16 By MS/MS By MS/MS 1 2 0.9967 0.96208 10.25 3 Median 0.9967 0.96208 NaN 1 0 Median 1.0206 0.90472 13.599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24629000 12618000 12011000 7658800 3980000 3678800 16970000 8638000 8332300 0 0 0 0 0 0 0 0 0 0 0 0 30309 3544 31864 158157;158158;158159 159092;159093;159094;159095;159096 159095 5 SIIQSAQQDSIKK EFAIMQTPAGELYDKSIIQSAQQDSIKKAN DKSIIQSAQQDSIKKANMKRENKAYSFKEQ K S I K K A 1 0 0 1 0 3 0 0 0 3 0 2 0 0 0 3 0 0 0 0 0 0 13 1 1444.7886 Q92616 Q92616 777 789 GCN1L1 Translational activator GCN1 yes yes 2;3 8.0597E-07 106.4 By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 1.0953 1.0105 19.541 8 Median 0.9237 0.90527 12.966 3 2 Median 1.2304 1.1803 21.535 2 0 Median NaN NaN NaN 0 0 Median 1.2855 1.199 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2224 1.0908 11.24 2 0 Median 32864000 16063000 16801000 16129000 8915900 7213400 12184000 5179900 7004000 0 0 0 787430 324110 463320 0 0 0 3763400 1643500 2119900 30310 3544 31865 158160;158161;158162;158163;158164;158165;158166;158167 159097;159098;159099;159100;159101;159102;159103 159101 6 SIISMFDR LSNGTWTPFNPVTVRSIISMFDRENKAGVN FNPVTVRSIISMFDRENKAGVNFSEFTGVW R S I D R E 0 1 0 1 0 0 0 0 0 2 0 0 1 1 0 2 0 0 0 0 0 0 8 0 967.4797 O75340 O75340 67 74 PDCD6 Programmed cell death protein 6 yes yes 2 0.005111 77.674 By MS/MS By MS/MS By matching 1 1 1 1.0933 1.0258 6.3287 3 Median 0.99037 0.96046 NaN 1 0 Median 1.3116 1.09 NaN 1 0 Median 1.0933 1.0258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15110000 7052200 8058000 12021000 5750000 6271100 1435100 587490 847570 1654100 714760 939350 0 0 0 0 0 0 0 0 0 30311 1659 31866 158168;158169;158170 159104;159105;159106 159105 3 SIISMFDRENK LSNGTWTPFNPVTVRSIISMFDRENKAGVN VTVRSIISMFDRENKAGVNFSEFTGVWKYI R S I N K A 0 1 1 1 0 0 1 0 0 2 0 1 1 1 0 2 0 0 0 0 0 0 11 1 1338.6602 O75340 O75340 67 77 PDCD6 Programmed cell death protein 6 yes yes 2;3 6.0829E-05 129.38 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.158 1.1064 7.8227 7 Median 1.0179 0.99706 0.61519 2 0 Median 1.3126 1.158 6.4541 2 0 Median 1.1002 1.1342 7.7577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3887 1.111 NaN 1 0 Median 98111000 50721000 47390000 87802000 45773000 42029000 3755200 1665800 2089400 6140900 3107600 3033300 0 0 0 0 0 0 413000 174330 238670 30312 1659 31867 158171;158172;158173;158174;158175;158176;158177 159107;159108;159109;159110;159111;159112;159113 159110 7 SIKDTICNQDER VQNEAKLDEILKEIKSIKDTICNQDERISK EIKSIKDTICNQDERISKLEQQMAKIAA__ K S I E R I 0 1 1 2 1 1 1 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 12 1 1477.6831 Q9ULV4;B4E3S0;H0YHL7 Q9ULV4 450 461 CORO1C Coronin-1C;Coronin yes no 2 0.065907 35.511 By MS/MS 1 1.2608 1.1509 NaN 1 Median NaN NaN NaN 0 0 Median 1.2608 1.1509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 841950 501960 339990 0 0 0 841950 501960 339990 0 0 0 0 0 0 0 0 0 0 0 0 30313 4329 31868 158178 159114 159114 1 SIKENASAGVER ITDEKSFENIQNWMKSIKENASAGVERLLL WMKSIKENASAGVERLLLGNKCDMEAKRKV K S I E R L 2 1 1 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 0 1 0 0 12 1 1259.647 P51153;A0A087WWB9 P51153 105 116 RAB13 Ras-related protein Rab-13 yes no 2;3 0.01009 44.318 By MS/MS By MS/MS By matching By matching 4 3 1 1 1.024 1.0211 23.384 9 Median 0.92858 0.97659 26.392 4 0 Median 1.3385 1.2619 11.177 3 0 Median 0.98298 1.0022 NaN 1 0 Median 1.1012 0.97478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3505400 1601300 1904100 1336900 646800 690080 1536800 641060 895770 515330 265730 249590 116350 47696 68658 0 0 0 0 0 0 30314 2430 31869 158179;158180;158181;158182;158183;158184;158185;158186;158187 159115;159116;159117;159118;159119 159118 5 SILAETEGMLR EETQSTLQAECDQYRSILAETEGMLRDLQK DQYRSILAETEGMLRDLQKSVEEEEQVWRA R S I L R D 1 1 0 0 0 0 2 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 11 0 1218.6278 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1133 1143 RRBP1 Ribosome-binding protein 1 yes no 2 0.0022965 77.677 By MS/MS 3 1.1962 1.1566 12.345 3 Plateau 1.1962 1.1566 12.345 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15947000 7366700 8580700 15947000 7366700 8580700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30315 4222 31870 158188;158189;158190 159120;159121;159122 159120 3 SILAEYK TATCPQSELDAETVKSILAEYKIHNADVTL ELDAETVKSILAEYKIHNADVTLRSDATAD K S I Y K I 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 7 0 822.44872 Q9Y295 Q9Y295 207 213 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.020057 60.788 By matching By MS/MS By MS/MS 1 1 1 1.1269 1.0175 12.528 3 Median 1.0811 1.0175 NaN 1 0 Median 1.1269 0.96578 NaN 1 0 Median 1.1457 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10985000 4876700 6108500 2658700 1286800 1371900 4373100 1648400 2724700 3953400 1941500 2011900 0 0 0 0 0 0 0 0 0 30316 4382 31871 158191;158192;158193 159123;159124;159125;159126 159123 4 SILAKPSSSPDPR QDVPKPVLTSVMVPKSILAKPSSSPDPRYL PKSILAKPSSSPDPRYLSVPPSPNISTSES K S I P R Y 1 1 0 1 0 0 0 0 0 1 1 1 0 0 3 4 0 0 0 0 0 0 13 1 1353.7252 Q9BTC0 Q9BTC0 1011 1023 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0014112 40.725 By MS/MS By matching 1 1 0.5952 0.64035 26.717 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44214 0.53011 NaN 1 0 Median 0.80123 0.7735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8724900 6547200 2177700 0 0 0 0 0 0 7906700 6115900 1790800 818220 431260 386960 0 0 0 0 0 0 30317 3824 31872 158194;158195 159127 159127 1 SILALVDGQPWDMYKPLTK PYSCAMHLSEWYCRKSILALVDGQPWDMYK LVDGQPWDMYKPLTKSCEIKFLTFKDCDPG K S I T K S 1 0 0 2 0 1 0 1 0 1 3 2 1 0 2 1 1 1 1 1 0 0 19 1 2174.1446 C9JG87;Q9NYK5 C9JG87 103 121 MRPL39 39S ribosomal protein L39, mitochondrial yes no 3 0.067248 8.6005 By MS/MS 1 1.3223 1.1911 NaN 1 Median NaN NaN NaN 0 0 Median 1.3223 1.1911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 525320 228090 297230 0 0 0 525320 228090 297230 0 0 0 0 0 0 0 0 0 0 0 0 30318 697 31873 158196 159128 159128 1 SILAMHAQDPQMLDQLSK TWHFSIRQHRELIPRSILAMHAQDPQMLDQ AMHAQDPQMLDQLSKNITRCGLSNSTLNYL R S I S K N 2 0 0 2 0 3 0 0 1 1 3 1 2 0 1 2 0 0 0 0 0 0 18 0 2025.0023 Q86U70 Q86U70 211 228 LDB1 LIM domain-binding protein 1 yes yes 3 0.019428 17.296 By matching By MS/MS 1 1 0.79378 0.84621 48.659 2 Median 0.56657 0.59986 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1121 1.1937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4870900 2531200 2339700 1202100 863940 338120 0 0 0 3668800 1667300 2001500 0 0 0 0 0 0 0 0 0 30319 3272 31874 158197;158198 159129 159129 1 SILCCLR HCIDPNDSKHKRTDRSILCCLRKGESGQSW SKHKRTDRSILCCLRKGESGQSWPRLTKER R S I L R K 0 1 0 0 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 7 0 920.45719 Q15185;A0A087WYT3 Q15185 72 78 PTGES3 Prostaglandin E synthase 3 yes no 2 0.016999 66.994 By MS/MS 2 1.0702 0.89657 11.249 2 Median NaN NaN NaN 0 0 Median 1.0702 0.89657 11.249 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14087000 6800900 7286400 0 0 0 14087000 6800900 7286400 0 0 0 0 0 0 0 0 0 0 0 0 30320 87 31875 158199;158200 159130;159131 159130 2 SILDADPEAQALLEISGHSR AVGDPSEEQLAKGNKSILDADPEAQALLEI DPEAQALLEISGHSRHSEGLREVPDDE___ K S I S R H 3 1 0 2 0 1 2 1 1 2 3 0 0 0 1 3 0 0 0 0 0 0 20 0 2121.0702 Q6P9B6 Q6P9B6 425 444 TLDC1 TLD domain-containing protein 1 yes yes 3 0.027383 21.599 By MS/MS 1 1.2873 1.1187 NaN 1 Median NaN NaN NaN 0 0 Median 1.2873 1.1187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1487800 627760 860020 0 0 0 1487800 627760 860020 0 0 0 0 0 0 0 0 0 0 0 0 30321 3165 31876 158201 159132 159132 1 SILDQLDWIVNK NSITEEVLDHMGTFRSILDQLDWIVNKFKE TFRSILDQLDWIVNKFKEDSSLELFLLIHN R S I N K F 0 0 1 2 0 1 0 0 0 2 2 1 0 0 0 1 0 1 0 1 0 0 12 0 1442.7769 Q13416 Q13416 368 379 ORC2 Origin recognition complex subunit 2 yes yes 2 0.0076677 38.293 By matching By matching By MS/MS By matching By matching 1 2 1 2 1 0.87499 0.77596 32.751 7 Median 0.64109 0.61525 NaN 1 0 Median 0.65935 0.58515 39.914 2 0 Median 1.1019 1.1766 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86119 0.86584 18.63 2 0 Median 1.093 0.94614 NaN 1 0 Median 2712000 1430900 1281100 138410 89987 48420 741890 382960 358930 1313100 654800 658340 0 0 0 472010 283750 188260 46524 19372 27153 30322 2813 31877 158202;158203;158204;158205;158206;158207;158208 159133 159133 1 SILDWTSFNQER WRNFADIDDSWKSIKSILDWTSFNQERIVD SIKSILDWTSFNQERIVDVAGPGGWNDPDM K S I E R I 0 1 1 1 0 1 1 0 0 1 1 0 0 1 0 2 1 1 0 0 0 0 12 0 1494.7103 A0A3B3IUC4;P06280 A0A3B3IUC4 282 293 GLA Alpha-galactosidase A yes no 2 0.00058963 73.067 By MS/MS 2 1.1139 1.1149 4.9016 2 Median 1.1139 1.1149 4.9016 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5061200 2354000 2707200 5061200 2354000 2707200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30323 446 31878 158209;158210 159134;159135;159136 159135 3 SILEIMHK ITILSTPEGTSAACKSILEIMHKEAQDIKF GTSAACKSILEIMHKEAQDIKFTEEIPLKI K S I H K E 0 0 0 0 0 0 1 0 1 2 1 1 1 0 0 1 0 0 0 0 0 0 8 0 969.53174 O00425 O00425 259 266 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.012659 54.549 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 2 3 1.3896 1.305 19.525 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0846 1.1528 NaN 1 0 Median 1.5615 1.3424 NaN 1 0 Median 1.3242 1.3146 1.0414 2 0 Median 1.5327 1.2586 32.509 3 0 Median 24811000 10111000 14701000 0 0 0 0 0 0 3989700 1846600 2143100 743560 292930 450630 8613600 3357400 5256200 11464000 4613700 6850600 30324 1462 31879 158211;158212;158213;158214;158215;158216;158217;158218 159137;159138;159139 159138 3 SILEKDPSIHQAR YEKTDKLDEALEDYKSILEKDPSIHQAREA YKSILEKDPSIHQAREACMRLPKQIEERNE K S I A R E 1 1 0 1 0 1 1 0 1 2 1 1 0 0 1 2 0 0 0 0 0 0 13 1 1492.7998 Q99614;H0YB37 Q99614 214 226 TTC1 Tetratricopeptide repeat protein 1 yes no 3 0.00090099 46.481 By MS/MS By MS/MS By MS/MS 1 1 1 1.1171 1.0741 1.1946 3 Plateau 1.0027 1.0741 NaN 1 0 Median 1.1206 1.0534 NaN 1 0 Median 0.94863 1.0766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9964600 4696500 5268100 2810400 1376100 1434300 5327500 2467200 2860300 1826700 853210 973490 0 0 0 0 0 0 0 0 0 30325 3758 31880 158219;158220;158221 159140;159141;159142;159143 159143 4 SILEQLAEK WHFEEAVDGECPPQRSILEQLAEKNFELVI ECPPQRSILEQLAEKNFELVINLSMRGAGG R S I E K N 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1029.5706 F8VPD4;P27708;H7C3Z5 F8VPD4 1316 1324 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00097604 87.476 By MS/MS By matching By matching 1 1 1 1.3037 1.2579 74.363 3 Median 1.3037 1.2579 NaN 1 0 Median 1.0152 0.89989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.4213 3.7318 NaN 1 0 Median NaN NaN NaN 0 0 Median 15545000 6394500 9150400 7466100 2903000 4563100 6978700 3353200 3625500 0 0 0 0 0 0 1100200 138370 961810 0 0 0 30326 1057 31881 158222;158223;158224 159144;159145 159145 2 SILEYLR RDKRLEKMVSGCQTRSILEYLRVGGRGGGK MVSGCQTRSILEYLRVGGRGGGKGKGRAEG R S I L R V 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 7 0 892.50182 Q8N1G4 Q8N1G4 253 259 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.0083653 86.086 By MS/MS By matching By MS/MS By matching 1 2 1 2 1.2302 1.1064 33.283 6 Median 1.1627 1.0991 NaN 1 0 Median 1.8644 1.6262 60.431 2 0 Median 1.1898 1.2152 NaN 1 0 Median 1.2816 1.0965 2.198 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65931000 29549000 36382000 20207000 9355800 10851000 35385000 15708000 19677000 8740200 3804600 4935600 1598700 680220 918500 0 0 0 0 0 0 30327 3359 31882 158225;158226;158227;158228;158229;158230 159146;159147;159148;159149 159148 4 SILFSNR SRALEMCPSCFQKERSILFSNRAAARMKQD PSCFQKERSILFSNRAAARMKQDKKEMAIN R S I N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 7 0 835.4552 Q99614 Q99614 155 161 TTC1 Tetratricopeptide repeat protein 1 yes yes 2 0.018479 62.714 By MS/MS By matching By matching 2 1 1 1.3058 1.2377 30.337 4 Median 1.2617 1.2377 11.717 2 0 Median 2.4145 2.0835 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2572 1.0588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10063000 3869400 6193800 6882100 2860300 4021800 2929800 936820 1993000 0 0 0 251220 72256 178960 0 0 0 0 0 0 30328 3758 31883 158231;158232;158233;158234 159150;159151 159151 2 SILFVPTSAPR MAYIHFTAEGEVTFKSILFVPTSAPRGLFD VTFKSILFVPTSAPRGLFDEYGSKKSDYIK K S I P R G 1 1 0 0 0 0 0 0 0 1 1 0 0 1 2 2 1 0 0 1 0 0 11 0 1186.671 P14625 P14625 385 395 HSP90B1 Endoplasmin yes yes 2 0.00014501 99.815 By MS/MS By MS/MS By matching By matching By matching 3 3 1 1 1 0.83806 0.87041 39.207 9 Median 0.82971 0.80297 3.6808 3 0 Median 1.0814 0.92509 54.136 3 1 Median 0.78895 0.87041 NaN 1 0 Median 1.21 1.0593 NaN 1 0 Median 0.45497 0.53258 NaN 1 0 Median NaN NaN NaN 0 0 Median 347880000 180520000 167360000 259300000 137630000 121670000 82423000 39578000 42845000 4695400 2522200 2173200 256540 118600 137940 1207900 669800 538120 0 0 0 30329 2006 31884 158235;158236;158237;158238;158239;158240;158241;158242;158243 159152;159153;159154;159155;159156;159157;159158;159159;159160 159155 9 SILGTLTVEQIYQDR DIKNVVLQTLEGHLRSILGTLTVEQIYQDR SILGTLTVEQIYQDRDQFAKLVREVAAPDV R S I D R D 0 1 0 1 0 2 1 1 0 2 2 0 0 0 0 1 2 0 1 1 0 0 15 0 1734.9152 J3QLD9;E7EMK3;Q14254 J3QLD9 113 127 FLOT2 Flotillin-2 yes no 2 0.00012752 78.908 By matching By MS/MS By MS/MS 1 2 1 1.4652 1.3669 16.528 4 Median 1.548 1.5144 NaN 1 0 Median 1.3722 1.2033 3.543 2 0 Median 1.6507 1.6617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6083400 2223900 3859500 713940 281910 432030 2326900 967910 1358900 3042600 974060 2068500 0 0 0 0 0 0 0 0 0 30330 856 31885 158244;158245;158246;158247 159161;159162;159163 159162 3 SILISSVASVHHANGLAK SPTAATSQQQQLKNKSILISSVASVHHANG ISSVASVHHANGLAKSSTTVSSFANSKPGS K S I A K S 3 0 1 0 0 0 0 1 2 2 2 1 0 0 0 4 0 0 0 2 0 0 18 0 1803.0003 Q13620;K4DI93 Q13620 161 178 CUL4B Cullin-4B yes no 3 0.054137 23.329 By matching By MS/MS By matching 1 1 1 0.98702 1.0851 39.328 3 Median 0.7187 0.71374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98702 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.874 1.5664 NaN 1 0 Median 6306700 3078300 3228400 2323900 1262400 1061500 0 0 0 3583000 1668700 1914300 0 0 0 0 0 0 399850 147240 252620 30331 1358 31886 158248;158249;158250 159164 159164 0 SILKIDDVVNTR LVSVSALTLATETVRSILKIDDVVNTR___ TVRSILKIDDVVNTR_______________ R S I T R - 0 1 1 2 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 2 0 0 12 1 1371.7722 P50991 P50991 528 539 CCT4 T-complex protein 1 subunit delta yes yes 2 1.9976E-05 104.79 By MS/MS 1 1.0513 1.0554 NaN 1 Median 1.0513 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7096500 3689100 3407400 7096500 3689100 3407400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30332 2424 31887 158251 159165 159165 1 SILLATDVASR SKRLGSLNKFKAKARSILLATDVASRGLDI AKARSILLATDVASRGLDIPHVDVVVNFDI R S I S R G 2 1 0 1 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 11 0 1144.6452 Q9H0S4 Q9H0S4 315 325 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.00012637 119.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1681 1.1851 6.4413 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.177 1.1432 NaN 1 0 Median 1.2633 1.0885 NaN 1 0 Median 1.1452 1.14 NaN 1 0 Median 1.1592 0.99583 NaN 1 0 Median 83929000 38337000 45593000 0 0 0 0 0 0 46124000 21059000 25065000 10547000 4412800 6134600 20101000 9579400 10521000 7156800 3285000 3871800 30333 3928 31888 158252;158253;158254;158255 159166;159167;159168;159169;159170 159168 5 SILLDMATRPAGQNLQGIEDK DGTARIWQFKRREWKSILLDMATRPAGQNL ATRPAGQNLQGIEDKITKMKVTMVAWDRHD K S I D K I 2 1 1 2 0 2 1 2 0 2 3 1 1 0 1 1 1 0 0 0 0 0 21 1 2269.1736 Q8WWQ0 Q8WWQ0 401 421 PHIP PH-interacting protein yes yes 3 7.9533E-05 36.856 By MS/MS 1 0.85823 0.97042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85823 0.97042 NaN 1 0 Median NaN NaN NaN 0 0 Median 3603900 1920300 1683600 0 0 0 0 0 0 0 0 0 0 0 0 3603900 1920300 1683600 0 0 0 30334 3512 31889 158256 159171;159172 159172 2 SILLNCATPDAVVR ALTEELHQKVSEEAKSILLNCATPDAVVRL KSILLNCATPDAVVRLSAYSLGGFAAEWLS K S I V R L 2 1 1 1 1 0 0 0 0 1 2 0 0 0 1 1 1 0 0 2 0 0 14 0 1527.8079 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 3305 3318 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.049388 24.343 By MS/MS 1 1.214 1.0242 NaN 1 Median NaN NaN NaN 0 0 Median 1.214 1.0242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2085100 909670 1175400 0 0 0 2085100 909670 1175400 0 0 0 0 0 0 0 0 0 0 0 0 30335 189 31890 158257 159173 159173 1 SILLSVPLLVVDNK LTTVGKFEEAVEKFRSILLSVPLLVVDNKQ RSILLSVPLLVVDNKQEIAEAQQLITICRE R S I N K Q 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 2 0 0 0 3 0 0 14 0 1508.9178 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1031 1044 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0015664 47.894 By MS/MS By matching By matching By matching 4 2 2 1 0.9642 0.93334 12.585 9 Median 0.93117 0.92749 3.5658 4 0 Median 1.0702 0.95921 11.548 2 0 Median 1.019 1.072 23.26 2 0 Median 1.2604 1.1356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10759000 5326200 5432700 8022500 3995200 4027300 891610 442010 449600 1802200 871810 930390 42655 17171 25484 0 0 0 0 0 0 30336 2473 31891 158258;158259;158260;158261;158262;158263;158264;158265;158266 159174;159175;159176;159177;159178 159175 5 SILNSLSGEELETLK EALEMLSQESEIKVKSILNSLSGEELETLK SILNSLSGEELETLKVELEQLKETFSLAEF K S I L K V 0 0 1 0 0 0 3 1 0 1 4 1 0 0 0 3 1 0 0 0 0 0 15 0 1631.8618 Q9NRY5;E7ESJ7 Q9NRY5 266 280 FAM114A2 Protein FAM114A2 yes no 2 0.00033853 54.471 By MS/MS 1 1.355 1.1747 NaN 1 Median NaN NaN NaN 0 0 Median 1.355 1.1747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1138200 489420 648820 0 0 0 1138200 489420 648820 0 0 0 0 0 0 0 0 0 0 0 0 30337 4095 31892 158267 159179 159179 1 SILPTAPR HSNDDDVYRAPPIDRSILPTAPRAAREPNI RAPPIDRSILPTAPRAAREPNIDRSRLPKS R S I P R A 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 8 0 853.50215 E7EX17;P23588;F8W0K0;F8VSC7;F8VP89;F8VX11;F8VRU1;F8VYE9 E7EX17 71 78 EIF4B Eukaryotic translation initiation factor 4B yes no 2 0.0024585 121.29 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.73727 0.73418 28.101 6 Median 0.80007 0.76198 NaN 1 0 Median 1.2989 1.2567 NaN 1 0 Median 0.72808 0.76335 10.767 2 0 Median 0.67741 0.58968 3.8772 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17789000 9636700 8152500 6111400 3353600 2757800 3188900 1546100 1642800 6695200 3694100 3001100 1793800 1043000 750860 0 0 0 0 0 0 30338 904 31893 158268;158269;158270;158271;158272;158273 159180;159181;159182;159183;159184 159181 5 SILQNLDLR EVASKRIEEKIQEEKSILQNLDLRGQSIFS KIQEEKSILQNLDLRGQSIFSTIHTYGLYV K S I L R G 0 1 1 1 0 1 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1070.6084 Q9H7D0 Q9H7D0 203 211 DOCK5 Dedicator of cytokinesis protein 5 yes yes 2 0.015787 43.246 By MS/MS 1 0.94127 1.0461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94127 1.0461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1293200 627690 665540 0 0 0 0 0 0 1293200 627690 665540 0 0 0 0 0 0 0 0 0 30339 3981 31894 158274 159185 159185 1 SILQQAR PSSASGSGNSDDAIRSILQQARREMEAQQA GNSDDAIRSILQQARREMEAQQAALDPALK R S I A R R 1 1 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 814.4661 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 663 669 no no 2 0.023603 56.51 By MS/MS By MS/MS 1 2 1.2002 1.1105 14.605 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2002 1.3318 NaN 1 0 Median 1.207 1.0525 7.5806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2743800 1099600 1644200 0 0 0 0 0 0 1842600 759690 1082900 901190 339940 561250 0 0 0 0 0 0 30340 388 31895 158275;158276;158277 159186;159187;159188 159188 3 SILSISDEAAR ______________________________ PDYRSILSISDEAARAQALNEHLSTRSYVQ R S I A R A 2 1 0 1 0 0 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 11 0 1160.6037 E9PLP0 E9PLP0 14 24 CARS yes yes 2 0.0024672 53.327 By MS/MS 1 1.1328 0.97611 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1328 0.97611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2246300 1149400 1096900 0 0 0 0 0 0 0 0 0 2246300 1149400 1096900 0 0 0 0 0 0 30341 962 31896 158278 159189 159189 1 SILTISR YHQLLEKVRIRDALRSILTISRHGNQYIQV VRIRDALRSILTISRHGNQYIQVNEPWKRI R S I S R H 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 0 7 0 788.4756 P56192;H0YIP0 P56192 707 713 MARS Methionine--tRNA ligase, cytoplasmic yes no 2 0.023882 70.912 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6283600 0 6283600 2566100 0 2566100 3717500 0 3717500 0 0 0 0 0 0 0 0 0 0 0 0 30342 2508 31897 158279;158280 159190;159191 159191 2 SILTLSHEPK FPTSAACQAVAGVCKSILTLSHEPKVLQEG AGVCKSILTLSHEPKVLQEGLLQLDSILSS K S I P K V 0 0 0 0 0 0 1 0 1 1 2 1 0 0 1 2 1 0 0 0 0 0 10 0 1123.6237 Q7Z6Z7 Q7Z6Z7 830 839 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.018942 37.508 By MS/MS By matching 1 1 0.58703 0.59666 40.445 2 Median 0.44748 0.44825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7701 0.7942 NaN 1 0 Median 13160000 7938900 5221000 11447000 7176500 4270200 0 0 0 0 0 0 0 0 0 0 0 0 1713200 762440 950790 30343 3253 31898 158281;158282 159192 159192 1 SILTQIDHILMDKER LASGKLGKGFGAFERSILTQIDHILMDKER SILTQIDHILMDKERLLRRTQTKRSVYRVL R S I E R L 0 1 0 2 0 1 1 0 1 3 2 1 1 0 0 1 1 0 0 0 0 0 15 1 1810.9611 Q9NY61;A0A087WWS8 Q9NY61 391 405 AATF Protein AATF yes no 3 0.019303 31.827 By matching By MS/MS By MS/MS 2 2 3 1.1884 1.1511 18.594 7 Median NaN NaN NaN 0 0 Median 0.98292 0.94264 37.203 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0851 1.1592 0.99141 2 0 Median 1.1926 1.0838 8.7483 3 1 Median 23615000 9723500 13892000 0 0 0 6101200 3143900 2957300 0 0 0 0 0 0 8057900 3558300 4499500 9456100 3021200 6434800 30344 4172 31899 158283;158284;158285;158286;158287;158288;158289 159193;159194;159195 159195 3 SILTTLIQK CGRVLELLKQYQNFKSILTTLIQKEESVIS QYQNFKSILTTLIQKEESVISLQASYMGKE K S I Q K E 0 0 0 0 0 1 0 0 0 2 2 1 0 0 0 1 2 0 0 0 0 0 9 0 1015.6277 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1545 1553 SYNE2 Nesprin-2 yes no 2 0.0021293 74.127 By matching By matching By MS/MS By matching 1 1 1 1 0.90885 0.95937 26.13 4 Median 0.73987 0.7362 NaN 1 0 Median 1.5558 1.3753 NaN 1 0 Median 0.93504 1.019 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8834 0.90318 NaN 1 0 Median NaN NaN NaN 0 0 Median 4667900 2305300 2362600 1011200 545280 465900 638380 219970 418400 2570000 1330700 1239300 0 0 0 448330 209360 238970 0 0 0 30345 3521 31900 158290;158291;158292;158293 159196;159197 159197 2 SILTVPWVELGGK HGEEYTFSLPCAYARSILTVPWVELGGKVS ARSILTVPWVELGGKVSVNCAKTGYSASIT R S I G K V 0 0 0 0 0 0 1 2 0 1 2 1 0 0 1 1 1 1 0 2 0 0 13 0 1397.7919 Q9BXB4 Q9BXB4 574 586 OSBPL11 Oxysterol-binding protein-related protein 11 yes yes 2 0.011894 35.224 By MS/MS By MS/MS 2 1 0.90497 0.82756 5.6378 3 Plateau 0.87441 0.86035 5.4945 2 0 Median 0.91099 0.80157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4145700 2133100 2012600 1143200 584260 558980 3002500 1548900 1453600 0 0 0 0 0 0 0 0 0 0 0 0 30346 3878 31901 158294;158295;158296 159198;159199 159198 2 SILVSPTGPSR GLNRNMTAEFKKTDKSILVSPTGPSRVAFD KTDKSILVSPTGPSRVAFDPEQKPLHGVLK K S I S R V 0 1 0 0 0 0 0 1 0 1 1 0 0 0 2 3 1 0 0 1 0 0 11 0 1112.619 Q14684 Q14684 702 712 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 2.1531E-06 161.79 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 3 0.91762 0.87793 39.204 12 Median NaN NaN NaN 0 0 Median 0.90885 0.81785 NaN 1 0 Median 0.78719 0.83303 26.248 3 0 Median 1.2866 1.0123 27.701 3 0 Plateau 0.95742 0.95253 50.595 2 1 Median 1.9931 1.6903 66.798 3 2 Plateau 53908000 27368000 26540000 0 0 0 1003400 518350 485000 41645000 21755000 19890000 6121100 2932200 3188900 1446700 786610 660060 3692000 1376000 2316000 30347 2890 31902 158297;158298;158299;158300;158301;158302;158303;158304;158305;158306;158307;158308;158309 159200;159201;159202;159203;159204;159205;159206;159207;159208;159209 159201 10 SILYDER KAANGVVLATEKKQKSILYDERSVHKVEPI LATEKKQKSILYDERSVHKVEPITKHIGLV K S I E R S 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 7 0 894.4447 A0A024RA52;P25787 A0A024RA52 54 60 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 0.015644 70.912 By MS/MS By MS/MS By MS/MS 1 1 1 1.2554 1.1091 6.1811 3 Median 1.167 1.1091 NaN 1 0 Median 1.2601 1.0659 NaN 1 0 Median 1.2554 1.2033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48794000 23106000 25689000 30365000 14791000 15574000 13246000 5998900 7247300 5183100 2315800 2867300 0 0 0 0 0 0 0 0 0 30348 7 31903 158310;158311;158312 159210;159211;159212 159210 3 SIMELMNVLELR EKLIKRQEELDRGYKSIMELMNVLELRKYE GYKSIMELMNVLELRKYEAIQLTFKQVSKN K S I L R K 0 1 1 0 0 0 2 0 0 1 3 0 2 0 0 1 0 0 0 1 0 0 12 0 1446.7575 Q9UQE7 Q9UQE7 1013 1024 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.001303 54.608 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1 1.0745 1.0385 12.964 8 Median 1.0018 1.0117 NaN 1 0 Median 1.1336 1.0133 NaN 1 0 Median 0.90598 0.98185 3.6408 2 0 Median 1.5543 1.3853 NaN 1 0 Median 1.0745 1.1043 5.2306 2 0 Median 1.4371 1.2708 NaN 1 0 Median 4972200 2401700 2570500 526900 217730 309170 61590 27835 33755 2736900 1393000 1343900 79630 28533 51098 1534100 722880 811240 33052 11745 21307 30349 4362 31904;31905 158313;158314;158315;158316;158317;158318;158319;158320 159213;159214;159215;159216;159217 159216 1942 5 SIMGLEGEDEGAISMLSDNTAK LESYRAQEDEVKRLKSIMGLEGEDEGAISM EDEGAISMLSDNTAKLTSAVSSLPELLEKK K S I A K L 2 0 1 2 0 0 3 3 0 2 2 1 2 0 0 3 1 0 0 0 0 0 22 0 2267.0297 Q8WVM8 Q8WVM8 360 381 SCFD1 Sec1 family domain-containing protein 1 yes yes 2 0.040597 19.075 By MS/MS 1 0.75506 0.73154 NaN 1 Median 0.75506 0.73154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1080800 499300 581460 1080800 499300 581460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30350 3503 31906 158321 159218 159218 1 SIMSYNGGAVMAMK ______________________________ MSIMSYNGGAVMAMKGKNCVAIAADRRFGI M S I M K G 2 0 1 0 0 0 0 2 0 1 0 1 3 0 0 2 0 0 1 1 0 0 14 0 1458.6669 P49720;A0A087WXQ8;A0A087WY10 P49720 2 15 PSMB3 Proteasome subunit beta type-3 yes no 2 6.5954E-08 102.06 By MS/MS By matching 2 1 1.1744 1.0945 9.1898 3 Median 1.1272 1.0209 9.8511 2 0 Median NaN NaN NaN 0 0 Median 1.2263 1.1325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11676000 5399500 6276400 11190000 5139800 6050400 0 0 0 485810 259780 226030 0 0 0 0 0 0 0 0 0 30351 2391 31907 158322;158323;158324 159219;159220 159220 2 SIMTIVGHTDVVK GSYDKTSRIWSLEGKSIMTIVGHTDVVKDV GKSIMTIVGHTDVVKDVAWVKKDSLSCLLL K S I V K D 0 0 0 1 0 0 0 1 1 2 0 1 1 0 0 1 2 0 0 3 0 0 13 0 1398.7541 Q9GZL7 Q9GZL7 132 144 WDR12 Ribosome biogenesis protein WDR12 yes yes 2 3.7856E-05 90.913 By matching By MS/MS 1 1 1.1242 1.0268 9.6555 2 Median NaN NaN NaN 0 0 Median 1.2551 1.0994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 0.95904 NaN 1 0 Median NaN NaN NaN 0 0 Median 10162000 4948500 5213700 0 0 0 3937200 1745800 2191400 0 0 0 0 0 0 6225000 3202700 3022300 0 0 0 30352 3908 31908 158325;158326 159221;159222 159221 2 SINDMMSSMSDQTVR KGEADFVESLLQLFRSINDMMSSMSDQTVR SINDMMSSMSDQTVRVKGAALKYLPTIVND R S I V R V 0 1 1 2 0 1 0 0 0 1 0 0 3 0 0 4 1 0 0 1 0 0 15 0 1700.7168 A0A096LNH6;Q14185 A0A096LNH6 799 813 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.0017959 56.225 By MS/MS 1 0.68549 0.76154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68549 0.76154 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2447000 1462700 984250 0 0 0 0 0 0 2447000 1462700 984250 0 0 0 0 0 0 0 0 0 30353 140 31909 158327 159223 159223 1 SINDNIAIFTEVQK SLENTVEERLTELTKSINDNIAIFTEVQKR KSINDNIAIFTEVQKRSQKEINDMKAKVAS K S I Q K R 1 0 2 1 0 1 1 0 0 3 0 1 0 1 0 1 1 0 0 1 0 0 14 0 1590.8253 Q07065 Q07065 247 260 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00030074 73.951 By MS/MS By MS/MS By MS/MS 1 1 1 1.0559 0.88272 5.5301 3 Plateau 1.0292 0.96472 NaN 1 0 Median 1.0559 0.88272 NaN 1 0 Median 0.82037 0.87162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34455000 16487000 17967000 13818000 7114500 6704000 16342000 6805200 9536600 4294300 2567500 1726900 0 0 0 0 0 0 0 0 0 30354 2730 31910 158328;158329;158330 159224;159225;159226;159227 159225 4 SINDNIAIFTEVQKR SLENTVEERLTELTKSINDNIAIFTEVQKR SINDNIAIFTEVQKRSQKEINDMKAKVASL K S I K R S 1 1 2 1 0 1 1 0 0 3 0 1 0 1 0 1 1 0 0 1 0 0 15 1 1746.9264 Q07065 Q07065 247 261 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 0.0004646 66.262 By MS/MS 2 1.0823 1.0852 9.7843 2 Median 1.0823 1.0852 9.7843 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33985000 15357000 18627000 33985000 15357000 18627000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30355 2730 31911 158331;158332 159228;159229;159230 159229 3 SINDVTSANPLR S I L R 1 1 2 1 0 0 0 0 0 1 1 0 0 0 1 2 1 0 0 1 0 0 12 0 1285.6626 REV__H0Y818 yes no 3 0.0017801 38.783 By matching By MS/MS By matching 1 1 1 1.1453 1.1504 117.68 3 Median 1.1453 1.2178 NaN 1 0 Median 0.17776 0.15425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2357 1.1504 NaN 1 0 Median 3218500 2353000 865530 78155 44929 33226 3065100 2271800 793300 0 0 0 0 0 0 0 0 0 75294 36295 38999 + 30356 4521 31912 158333;158334;158335 159231 159231 1 SINGILFPGGSVDLR VRLDLTEKDYEILFKSINGILFPGGSVDLR SINGILFPGGSVDLRRSDYAKVAKIFYNLS K S I L R R 0 1 1 1 0 0 0 3 0 2 2 0 0 1 1 2 0 0 0 1 0 0 15 0 1543.8358 Q92820 Q92820 89 103 GGH Gamma-glutamyl hydrolase yes yes 2 0.00037043 60.434 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.93137 0.94238 39.024 5 Median 0.76574 0.75233 31.852 2 0 Median 1.1547 0.987 NaN 1 0 Median 0.80976 0.77691 NaN 1 0 Median 2 1.7269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11797000 6094500 5702500 5602500 3267500 2334900 1832300 862510 969810 1414200 932430 481820 2948000 1032100 1916000 0 0 0 0 0 0 30357 3560 31913 158336;158337;158338;158339;158340 159232;159233;159234;159235;159236 159234 5 SINNPDMR KKEGKLIMGIGHRVKSINNPDMRVQILKDY GIGHRVKSINNPDMRVQILKDYVRQHFPAT K S I M R V 0 1 2 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 8 0 945.43381 P53396 P53396 979 986 ACLY ATP-citrate synthase yes yes 2 0.0033382 98.997 By MS/MS By MS/MS 1 2 1.0865 0.94994 2.2714 3 Median 0.96804 0.95033 NaN 1 0 Median 1.0942 0.93153 2.767 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28912000 13808000 15104000 2463300 1272800 1190500 26449000 12536000 13913000 0 0 0 0 0 0 0 0 0 0 0 0 30358 2467 31914 158341;158342;158343 159237;159238;159239 159239 3 SINPDEAVAYGAAVQAAILMGDK QKLLQDFFNGRDLNKSINPDEAVAYGAAVQ AYGAAVQAAILMGDKSENVQDLLLLDVAPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 1 0 1 1 0 0 1 2 0 0 23 0 2303.1467 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;Q53FA3;P34931 A0A0G2JIW1 363 385 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2;3 2.4076E-17 77.562 By MS/MS By MS/MS By MS/MS 5 2 1 1.1041 1.0906 10.228 8 Median 1.1231 1.1058 3.3945 5 0 Median 1.0471 0.88081 2.5163 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0852 1.1131 NaN 1 0 Median NaN NaN NaN 0 0 Median 43810000 20074000 23736000 27242000 12257000 14984000 15504000 7341200 8163100 0 0 0 0 0 0 1064200 475530 588710 0 0 0 30359 278;2229 31915 158344;158345;158346;158347;158348;158349;158350;158351 159240;159241;159242;159243;159244 159240 5 SINPDEAVAYGAAVQAAILSGDK QKLLQDFFNGKELNKSINPDEAVAYGAAVQ AYGAAVQAAILSGDKSENVQDLLLLDVTPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 23 0 2259.1383 P11142;E9PKE3;E9PNE6;A8K7Q2 P11142 362 384 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 3.5612E-11 55.213 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 3 4 1 0.88301 0.83762 16.708 16 Median 0.87208 0.83529 2.1669 4 0 Median 0.90165 0.76726 5.2689 4 0 Median 0.84777 0.90055 38.538 3 0 Plateau 0.98639 0.84529 6.1963 4 0 Median 0.81041 0.83746 NaN 1 0 Median NaN NaN NaN 0 0 Median 49143000 24960000 24183000 28536000 14444000 14091000 10552000 5481000 5070600 2983300 1609600 1373800 2245100 1033500 1211600 4827400 2392200 2435100 0 0 0 30360 1950 31916 158352;158353;158354;158355;158356;158357;158358;158359;158360;158361;158362;158363;158364;158365;158366;158367 159245;159246;159247;159248;159249;159250;159251;159252;159253;159254;159255;159256;159257;159258 159251 14 SINPLGGFVHYGEVTNDFVMLK LIKNNASTDYDLSDKSINPLGGFVHYGEVT FVHYGEVTNDFVMLKGCVVGTKKRVLTLRK K S I L K G 0 0 2 1 0 0 1 3 1 1 2 1 1 2 1 1 1 0 1 3 0 0 22 0 2436.2148 P39023;G5E9G0 P39023 313 334 RPL3 60S ribosomal protein L3 yes no 3 4.9013E-05 48.229 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 1 5 1 1 2 1 1.0108 0.91443 16.65 11 Median 1.1462 1.0776 NaN 1 0 Median 1.0712 0.93347 21.834 5 0 Median 0.94991 0.91443 NaN 1 0 Median 1.0911 0.97225 NaN 1 0 Median 0.79603 0.80173 5.0375 2 0 Median 0.99598 0.79054 NaN 1 1 Median 40461000 19620000 20841000 1434400 595870 838550 18041000 8453600 9587600 17943000 9264500 8678500 276590 140120 136470 827610 438190 389420 1937900 727490 1210400 30361 2281 31917 158368;158369;158370;158371;158372;158373;158374;158375;158376;158377;158378 159259;159260;159261;159262;159263;159264 159264 6 SINQGLDR SVLHSRHTELKEKLRSINQGLDRLRRVSHQ ELKEKLRSINQGLDRLRRVSHQGYSTEAEF R S I D R L 0 1 1 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 901.46174 P30533;A0A3B3IRQ7 P30533 230 237 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2 0.0072009 89.142 By matching By MS/MS By MS/MS 1 2 1 1.6543 1.1985 14.895 3 Plateau 1.1693 1.1985 NaN 1 0 Median 1.659 1.436 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2225 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4856000 1565000 3291000 579540 228960 350580 3626500 1040500 2586000 0 0 0 649950 295520 354430 0 0 0 0 0 0 30362 2196 31918 158379;158380;158381;158382 159265;159266;159267 159266 3 SINQPVAFVR ______________________________ AALRRSINQPVAFVRRIPWTAASSQLKEHF R S I V R R 1 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 2 0 0 10 0 1129.6244 Q9GZT3;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;H0YJI1 Q9GZT3 15 24 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes no 2 0.00026776 127.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1.2164 0.98384 13.506 7 Median 0.93768 0.90299 NaN 1 0 Median 1.2312 1.0262 5.9568 2 0 Median 1.1033 1.1148 NaN 1 0 Median 1.2138 0.91234 3.0935 2 0 Median 1.2249 1.2957 NaN 1 1 Median NaN NaN NaN 0 0 Median 596430000 278670000 317760000 233270000 120290000 112970000 296140000 128070000 168070000 31758000 14834000 16924000 30336000 13617000 16718000 4933200 1850400 3082800 0 0 0 30363 3914 31919 158383;158384;158385;158386;158387;158388;158389 159268;159269;159270;159271;159272;159273;159274;159275;159276;159277;159278;159279;159280;159281 159270 14 SINQQSGAHVELQR DKCGLVIGKGGENIKSINQQSGAHVELQRN KSINQQSGAHVELQRNPPPNSDPNLRRFTI K S I Q R N 1 1 1 0 0 3 1 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 14 0 1565.791 Q96I24 Q96I24 379 392 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 6.1197E-09 151.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 8 10 6 7 1.234 1.0917 13.219 35 Median 1.0134 0.95917 9.4664 3 0 Median 1.2616 1.0917 NaN 1 0 Median 1.1456 1.134 6.9431 8 0 Median 1.3131 1.1371 16.017 10 1 Median 1.0509 1.044 15.326 6 1 Median 1.2774 1.0904 12.208 7 1 Median 506020000 229070000 276950000 32184000 16490000 15694000 2040200 1024000 1016200 165570000 77278000 88294000 67074000 27168000 39907000 133530000 61464000 72062000 105620000 45646000 59976000 30364 3673 31920 158390;158391;158392;158393;158394;158395;158396;158397;158398;158399;158400;158401;158402;158403;158404;158405;158406;158407;158408;158409;158410;158411;158412;158413;158414;158415;158416;158417;158418;158419;158420;158421;158422;158423;158424 159282;159283;159284;159285;159286;159287;159288;159289;159290;159291;159292;159293;159294;159295;159296;159297;159298;159299;159300;159301;159302;159303;159304;159305;159306;159307;159308;159309;159310;159311;159312;159313;159314;159315;159316;159317;159318;159319;159320;159321;159322;159323;159324;159325;159326;159327;159328;159329;159330;159331;159332;159333;159334;159335;159336;159337;159338;159339;159340 159309 59 SINSILDYISTSK LTYIRSAVTRNYSEKSINSILDYISTSKQM EKSINSILDYISTSKQMDLLQEFYETTLEA K S I S K Q 0 0 1 1 0 0 0 0 0 3 1 1 0 0 0 4 1 0 1 0 0 0 13 0 1439.7508 P61201;B4DIH5;H0YKU5;H0YM03 P61201 111 123 COPS2 COP9 signalosome complex subunit 2 yes no 2 7.4862E-07 112.15 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1.2553 1.0825 26.774 9 Median 1.078 1.0168 28.9 3 0 Plateau 1.2746 1.0825 6.1215 3 0 Median 1.401 1.4386 19.257 2 0 Median 1.2307 1.0968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28328000 12939000 15389000 6525500 3345300 3180100 13908000 6156300 7751900 7596000 3308000 4287900 298480 129270 169210 0 0 0 0 0 0 30365 2548 31921 158425;158426;158427;158428;158429;158430;158431;158432;158433 159341;159342;159343;159344;159345;159346 159346 6 SIPAYLAETLYYAMK GNLEQLLLAVVKSIRSIPAYLAETLYYAMK SIPAYLAETLYYAMKGAGTDDHTLIRVMVS R S I M K G 3 0 0 0 0 0 1 0 0 1 2 1 1 0 1 1 1 0 3 0 0 0 15 0 1732.8746 P08758;D6RBL5;D6RBE9 P08758 246 260 ANXA5 Annexin A5;Annexin yes no 2 0.016086 26.786 By MS/MS By MS/MS By matching 1 1 1 1.0377 0.94759 7.3649 3 Median 0.97794 0.94759 NaN 1 0 Median 1.044 0.87874 NaN 1 0 Median 1.0377 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7117000 3403200 3713800 3351100 1649400 1701700 2920100 1359900 1560300 845750 393960 451790 0 0 0 0 0 0 0 0 0 30366 1909 31922 158434;158435;158436 159347;159348 159348 2 SIPDGSEKGDFIALDLGGSSFR FNPTATVKMLPTFVRSIPDGSEKGDFIALD KGDFIALDLGGSSFRILRVQVNHEKNQNVH R S I F R I 1 1 0 3 0 0 1 4 0 2 2 1 0 2 1 4 0 0 0 0 0 0 22 1 2267.107 P19367;B1AR62 P19367 70 91 HK1 Hexokinase-1 yes no 3 0.00026764 27.32 By MS/MS 1 0.81678 0.84765 NaN 1 Median 0.81678 0.84765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2381900 1014800 1367100 2381900 1014800 1367100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30367 2064 31923 158437 159349 159349 1 SIPICTLK FLTESYSSSQDPPEKSIPICTLKNFPNAIE SQDPPEKSIPICTLKNFPNAIEHTLQWARD K S I L K N 0 0 0 0 1 0 0 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 8 0 930.52084 P22314 P22314 628 635 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.027614 41.025 By MS/MS 1 1.2591 1.057 NaN 1 Median NaN NaN NaN 0 0 Median 1.2591 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43064000 18957000 24107000 0 0 0 43064000 18957000 24107000 0 0 0 0 0 0 0 0 0 0 0 0 30368 2100 31924 158438 159350;159351 159351 2 SIPLAMAPVFEQK HQYTLEPSEKPFDMKSIPLAMAPVFEQKAE MKSIPLAMAPVFEQKAEITLVATKPEKLAP K S I Q K A 2 0 0 0 0 1 1 0 0 1 1 1 1 1 2 1 0 0 0 1 0 0 13 0 1429.7639 Q9UBF2 Q9UBF2 578 590 COPG2 Coatomer subunit gamma-2 yes yes 2 0.0023956 48.004 By MS/MS By matching By matching 2 1 2 0.72855 0.64396 26.388 5 Median 0.61991 0.58354 26.159 2 0 Median 0.72855 0.64396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63379 0.53944 43.445 2 0 Median 12894000 7765800 5128600 9660300 5676900 3983500 2169800 1305500 864260 0 0 0 0 0 0 0 0 0 1064400 783480 280870 30369 4238 31925 158439;158440;158441;158442;158443 159352;159353 159353 2 SIPLDEGEDEAQR LSTDMIFNNFLARLRSIPLDEGEDEAQRRR LRSIPLDEGEDEAQRRRKGKEDEGEEAASP R S I Q R R 1 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 13 0 1457.6634 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2384 2396 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.0658E-11 130.94 By MS/MS By MS/MS By MS/MS 1 3 2 0.79906 0.78296 21.438 4 Median 0.74457 0.72298 NaN 1 1 Median 1.0107 0.84793 NaN 1 0 Median 0.68507 0.73536 34.82 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54604000 35815000 18789000 26713000 16434000 10279000 1097300 563380 533910 26794000 18818000 7976000 0 0 0 0 0 0 0 0 0 30370 2865 31926 158444;158445;158446;158447;158448;158449 159354;159355;159356;159357;159358;159359 159358 6 SIPLDEGEDEAQRR LSTDMIFNNFLARLRSIPLDEGEDEAQRRR RSIPLDEGEDEAQRRRKGKEDEGEEAASPM R S I R R R 1 2 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 14 1 1613.7645 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2384 2397 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 2.3294E-09 143.5 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 0.83722 0.86356 11.04 9 Median 0.79769 0.88146 3.6878 3 0 Plateau 0.98505 0.92324 8.6109 3 0 Median 0.71952 0.79075 7.4339 2 0 Median 1.1612 1.0821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158740000 83356000 75381000 44059000 23315000 20744000 72195000 36543000 35652000 36962000 21246000 15715000 5521500 2251800 3269800 0 0 0 0 0 0 30371 2865 31927 158450;158451;158452;158453;158454;158455;158456;158457;158458 159360;159361;159362;159363;159364;159365;159366;159367;159368;159369;159370;159371;159372;159373 159370 14 SIPMTVDFIR DLLDYIKALNRNSDRSIPMTVDFIRLKSYC RNSDRSIPMTVDFIRLKSYCNDQSTGDIKV R S I I R L 0 1 0 1 0 0 0 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 10 0 1177.6165 P00492 P00492 92 101 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.00039551 78.334 By MS/MS By MS/MS By MS/MS By matching 5 5 1 1 1.044 0.98106 29.112 12 Median 1.0112 1.0084 10.097 5 0 Median 1.114 0.94536 41.939 5 0 Median 0.74975 0.72012 NaN 1 0 Median 1.5156 1.2362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152680000 85293000 67386000 133940000 75528000 58415000 11256000 5863700 5392600 7228700 3850300 3378400 250520 50295 200220 0 0 0 0 0 0 30372 1822 31928;31929 158459;158460;158461;158462;158463;158464;158465;158466;158467;158468;158469;158470 159374;159375;159376;159377;159378;159379;159380;159381;159382 159378 589 9 SIPPGLVNGLALQLR NIARHLAQVGDSMDRSIPPGLVNGLALQLR SIPPGLVNGLALQLRNTSRSEEDRNRDLAT R S I L R N 1 1 1 0 0 1 0 2 0 1 4 0 0 0 2 1 0 0 0 1 0 0 15 0 1546.9195 P55957 P55957 100 114 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 yes yes 2 0.039043 24.343 By MS/MS By matching 2 2 0.74564 0.67882 24.996 4 Median 0.59526 0.5743 21.991 2 0 Median 0.93735 0.78882 19.582 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3538800 1936100 1602800 3070700 1689700 1381000 468070 246310 221760 0 0 0 0 0 0 0 0 0 0 0 0 30373 2505 31930 158471;158472;158473;158474 159383 159383 1 SIPSLVDGFKPGQR INKELILFSNSDNERSIPSLVDGFKPGQRK RSIPSLVDGFKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 0 1 2 2 0 0 0 1 0 0 14 1 1499.8096 Q02880;E9PCY5 Q02880 735 748 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2;3 0.00013526 96.015 By MS/MS By MS/MS 2 2 0.70022 0.81537 15.743 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6434 0.7713 3.1982 2 2 Median NaN NaN NaN 0 0 Median 0.84088 0.95124 17.137 2 2 Median NaN NaN NaN 0 0 Median 29490000 16668000 12822000 0 0 0 0 0 0 19715000 11746000 7968200 0 0 0 9775600 4921900 4853700 0 0 0 30374 2704 31931 158475;158476;158477;158478 159384;159385;159386;159387 159385 4 SIPSMVDGLKPGQR INKELILFSNSDNERSIPSMVDGLKPGQRK RSIPSMVDGLKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 1 0 2 2 0 0 0 1 0 0 14 1 1483.7817 P11388 P11388 714 727 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 4.2099E-07 98.943 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 2 5 3 0.85271 0.96381 22.714 16 Median 0.68345 0.64003 NaN 1 0 Median 1.026 0.98788 NaN 1 0 Median 0.7592 0.91009 20.82 4 0 Median 1.1634 1.1231 9.4187 2 1 Median 0.8265 0.94032 27.753 5 0 Median 0.9364 0.83181 20.723 3 0 Median 118370000 61687000 56685000 632420 361290 271130 797720 413140 384580 34610000 20655000 13955000 6265800 2759200 3506700 73851000 36273000 37578000 2216000 1225600 990420 30375 1963 31932;31933 158479;158480;158481;158482;158483;158484;158485;158486;158487;158488;158489;158490;158491;158492;158493;158494;158495 159388;159389;159390;159391;159392;159393;159394;159395;159396;159397;159398;159399;159400;159401;159402 159395 746 15 SIPTLISR AEYGRLGLGEGAEEKSIPTLISRLPAVSSV GEGAEEKSIPTLISRLPAVSSVACGASVGY K S I S R L 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 8 0 885.52837 P18754;C9JW69 P18754 336 343 RCC1 Regulator of chromosome condensation yes no 2 0.0032066 100.39 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.121 1.0227 11.252 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.017 1.0391 9.5167 2 0 Median 1.1778 1.0236 9.2477 2 0 Median 1.1337 1.1521 16.843 2 0 Median 1.1359 0.94429 NaN 1 0 Median 459600000 218280000 241320000 0 0 0 0 0 0 148330000 72545000 75788000 286240000 133840000 152390000 22825000 10831000 11995000 2203500 1062200 1141400 30376 2061 31934 158496;158497;158498;158499;158500;158501;158502 159403;159404;159405;159406;159407;159408;159409;159410;159411;159412;159413;159414;159415;159416;159417;159418 159404 16 SIQADGLVWGSSK WDDETDMAKLEECVRSIQADGLVWGSSKLV VRSIQADGLVWGSSKLVPVGYGIKKLQIQC R S I S K L 1 0 0 1 0 1 0 2 0 1 1 1 0 0 0 3 0 1 0 1 0 0 13 0 1346.683 P24534 P24534 164 176 EEF1B2 Elongation factor 1-beta yes yes 2 6.603E-07 142.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 7 5 2 1 1.3101 1.1879 108.32 20 Median 1.2522 1.1311 108.06 3 1 Median 1.4977 1.2544 20.173 2 0 Median 1.3934 1.3089 44.491 7 1 Median 1.252 1.0368 7.878 5 2 Median 2.6546 2.7628 93.11 2 0 Median 81.823 63.779 NaN 1 0 Median 802220000 344520000 457710000 250240000 124640000 125590000 13650000 5516400 8133100 375140000 153570000 221570000 94956000 40341000 54615000 54379000 20243000 34136000 13861000 202120 13659000 30377 2123 31935 158503;158504;158505;158506;158507;158508;158509;158510;158511;158512;158513;158514;158515;158516;158517;158518;158519;158520;158521;158522;158523 159419;159420;159421;159422;159423;159424;159425;159426;159427;159428;159429;159430;159431;159432;159433;159434;159435;159436;159437;159438;159439;159440;159441;159442;159443;159444;159445;159446;159447;159448;159449;159450;159451;159452 159423 34 SIQDAELLVK TVYLNKLKTVDVIVRSIQDAELLVKGYEIK DVIVRSIQDAELLVKGYEIKLSQEEVVLAD R S I V K G 1 0 0 1 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1114.6234 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1160 1169 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00047649 90.657 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.746 1.6223 60.824 4 Median 0.85544 0.85685 NaN 1 1 Median 1.1708 1.03 NaN 1 0 Median 2.6036 2.7851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.9589 2.5551 NaN 1 0 Median 29807000 13610000 16197000 11276000 5545900 5730100 8530600 3988500 4542200 9679600 3973800 5705800 0 0 0 0 0 0 320920 101600 219320 30378 1220 31936 158524;158525;158526;158527 159453;159454;159455 159455 3 SIQEAPAVSEDLVIR SQTDLSQTISKKTVRSIQEAPAVSEDLVIR SIQEAPAVSEDLVIRLRRPPLRYPRYEATS R S I I R L 2 1 0 1 0 1 2 0 0 2 1 0 0 0 1 2 0 0 0 2 0 0 15 0 1625.8625 J3KN66 J3KN66 179 193 TOR1AIP1 yes yes 2 3.4219E-09 137.16 By matching By matching By MS/MS By matching By matching 1 1 3 1 2 1.0022 0.98532 75.14 8 Median 1.1091 1.1216 NaN 1 0 Median 1.215 1.0835 NaN 1 0 Median 0.90567 0.89657 60.422 3 0 Plateau 0.15999 0.15992 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3116 1.0858 0.38522 2 0 Median 37209000 19457000 17752000 2031500 868750 1162700 170080 78539 91539 33583000 17626000 15957000 636410 527960 108450 0 0 0 788310 356170 432140 30379 1302 31937 158528;158529;158530;158531;158532;158533;158534;158535 159456;159457;159458 159456 3 SIQEAPVSEDLVIR SQTDLSQTISKKTVRSIQEAPVSEDLVIRL RSIQEAPVSEDLVIRLRRPPLRYPRYEATS R S I I R L 1 1 0 1 0 1 2 0 0 2 1 0 0 0 1 2 0 0 0 2 0 0 14 0 1554.8253 A0A0A0MSK5;Q5JTV8;H0YDU3;H0YD16 A0A0A0MSK5 58 71 TOR1AIP1 Torsin-1A-interacting protein 1 yes no 2 0.00052445 68.069 By MS/MS 1 0.90414 0.938 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90414 0.938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4136400 2153600 1982800 0 0 0 0 0 0 4136400 2153600 1982800 0 0 0 0 0 0 0 0 0 30380 182 31938 158536 159459;159460 159459 2 SIQEELQQLR VRREEAAVDAQQQKRSIQEELQQLRQSSEA QQQKRSIQEELQQLRQSSEAEIQAKARQAE R S I L R Q 0 1 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1242.6568 Q15149 Q15149 1554 1563 PLEC Plectin yes yes 2 1.2108E-07 167.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 1.2809 1.173 14.202 6 Median 1.1158 1.0706 9.6529 2 0 Median NaN NaN NaN 0 0 Median 1.069 1.1193 NaN 1 0 Median 1.3789 1.2004 NaN 1 0 Median 1.497 1.5354 NaN 1 0 Median 1.4642 1.2144 NaN 1 0 Median 135330000 61734000 73597000 85623000 38967000 46657000 0 0 0 29939000 14571000 15368000 1770200 722220 1048000 13223000 5437600 7785400 4775100 2036700 2738400 30381 2933 31939 158537;158538;158539;158540;158541;158542;158543 159461;159462;159463;159464;159465;159466;159467;159468;159469;159470 159462 10 SIQEIQELDK EEDEHSVNYKPPAQKSIQEIQELDKDDESL PPAQKSIQEIQELDKDDESLRKYKEALLGR K S I D K D 0 0 0 1 0 2 2 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1201.619 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;J3KS60 J3KTF8 34 43 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2 0.00036109 99.815 By MS/MS 1 0.99211 0.83536 NaN 1 Median NaN NaN NaN 0 0 Median 0.99211 0.83536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3948700 1867700 2081000 0 0 0 3948700 1867700 2081000 0 0 0 0 0 0 0 0 0 0 0 0 30382 1336 31940 158544 159471;159472 159471 2 SIQEIQELDKDDESLR EEDEHSVNYKPPAQKSIQEIQELDKDDESL IQEIQELDKDDESLRKYKEALLGRVAVSAD K S I L R K 0 1 0 3 0 2 3 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 16 1 1916.9327 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;J3KS60 J3KTF8 34 49 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2;3 2.3346E-19 189.33 By MS/MS By MS/MS 2 2 1.1027 1.08 3.3073 4 Median 1.0074 1.0442 3.9134 2 0 Median 1.1779 1.0887 0.27281 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 253860000 125000000 128860000 226850000 113090000 113760000 27011000 11908000 15103000 0 0 0 0 0 0 0 0 0 0 0 0 30383 1336 31941 158545;158546;158547;158548 159473;159474;159475;159476;159477;159478;159479 159476 7 SIQEIQELDKDDESLRK EEDEHSVNYKPPAQKSIQEIQELDKDDESL QEIQELDKDDESLRKYKEALLGRVAVSADP K S I R K Y 0 1 0 3 0 2 3 0 0 2 2 2 0 0 0 2 0 0 0 0 0 0 17 2 2045.0277 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;J3KS60 J3KTF8 34 50 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 3;4 7.63E-19 172.57 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 2 1.0324 1.0818 10.987 12 Median 0.96456 1.0271 14.422 5 0 Median 1.2332 1.0693 2.5596 2 0 Median 0.97682 1.0937 6.4109 3 0 Median 1.3451 1.1095 2.3909 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 575470000 271790000 303680000 444190000 210180000 234010000 91599000 41498000 50100000 34971000 18342000 16629000 4717400 1770800 2946500 0 0 0 0 0 0 30384 1336 31942 158549;158550;158551;158552;158553;158554;158555;158556;158557;158558;158559;158560 159480;159481;159482;159483;159484;159485;159486;159487;159488;159489;159490;159491;159492;159493;159494;159495 159482 15 SIQFALR MVVKMLIEKDPSLEKSIQFALRQNLHEIGE EKDPSLEKSIQFALRQNLHEIGERCVEELK K S I L R Q 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 833.47594 F8W0Q9;Q8NEY8;F8WF16;B7Z8L1;F8W6A0 F8W0Q9 347 353 PPHLN1 Periphilin-1 yes no 2 0.0087724 85.306 By matching By MS/MS By matching 1 3 3 1.3222 1.1087 6.7895 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5276 1.2893 NaN 1 0 Median 1.1029 1.1087 4.1153 3 0 Median 1.3507 1.1541 4.6666 3 0 Plateau 14260000 6758400 7501300 0 0 0 0 0 0 0 0 0 227800 104570 123230 12247000 5854700 6392700 1784400 799080 985360 30385 1080 31943 158561;158562;158563;158564;158565;158566;158567 159496;159497;159498 159497 3 SIQFVDWCPTGFK PKDVNAAIATIKTKRSIQFVDWCPTGFKVG KRSIQFVDWCPTGFKVGINYQPPTVVPGGD R S I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 1 1 1 0 1 0 0 13 0 1583.7442 P68363;P68366 P68363 340 352 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain yes no 2 0.00051913 71.555 By matching By MS/MS By matching By matching 1 5 1 1 0.96107 0.87704 13.805 8 Median 0.88748 0.83653 NaN 1 0 Median 1.0407 0.87112 16.27 5 0 Median 0.79098 0.90131 NaN 1 0 Median 1.0443 0.91724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24626000 11989000 12637000 1697100 749660 947480 22233000 10942000 11291000 558660 244910 313750 137400 52100 85305 0 0 0 0 0 0 30386 2633 31944 158568;158569;158570;158571;158572;158573;158574;158575 159499;159500;159501;159502;159503;159504;159505 159500 7 SIQGSSTSSSASSTLSHGEVK ALQQSLQNAESWINRSIQGSSTSSSASSTL TSSSASSTLSHGEVKGTSGSLADVFANTRI R S I V K G 1 0 0 0 0 1 1 2 1 1 1 1 0 0 0 9 2 0 0 1 0 0 21 0 2035.9658 Q9P265 Q9P265 178 198 DIP2B Disco-interacting protein 2 homolog B yes yes 3 0.0075355 22.118 By MS/MS By MS/MS 1 1 0.99383 0.99007 16.32 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0178 1.1112 NaN 1 0 Median 0.97042 0.88216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3122400 1541000 1581400 0 0 0 0 0 0 2339200 1269800 1069500 783150 271190 511950 0 0 0 0 0 0 30387 4215 31945 158576;158577 159506;159507;159508 159507 3 SIQIHGTMR IDLEIKRYFCRAGVKSIQIHGTMRVILEPL CRAGVKSIQIHGTMRVILEPLIGDMPLVGA K S I M R V 0 1 0 0 0 1 0 1 1 2 0 0 1 0 0 1 1 0 0 0 0 0 9 0 1041.5389 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8 A0A499FIX8 217 225 ESYT2 Extended synaptotagmin-2 yes no 2 0.0030194 67.993 By MS/MS 1 1.1621 1.0162 NaN 1 Median NaN NaN NaN 0 0 Median 1.1621 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1714600 787530 927080 0 0 0 1714600 787530 927080 0 0 0 0 0 0 0 0 0 0 0 0 30388 72 31946 158578 159509;159510 159509 2 SIQLDGLVWGASK WDDETDMAQLEACVRSIQLDGLVWGASKLV VRSIQLDGLVWGASKLVPVGYGIRKLQIQC R S I S K L 1 0 0 1 0 1 0 2 0 1 2 1 0 0 0 2 0 1 0 1 0 0 13 0 1372.7351 E9PRY8;A0A087X1X7;H0YE72;H0YE58;E9PQC9;P29692;E9PK01;E9PQZ1 P29692 220 232 EEF1D Elongation factor 1-delta no no 2 7.4802E-07 116.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 4 2 7 1.1816 1.0068 22.703 22 Median 1.2429 1.1251 NaN 1 0 Median 1.2313 1.0348 18.8 3 0 Median 1.207 1.3098 16.948 5 0 Median 1.1707 0.99984 8.7927 4 0 Median 0.80302 0.7962 60.207 2 1 Median 1.0135 0.8434 11.464 7 0 Median 265730000 117340000 148400000 70417000 31360000 39058000 13356000 5977600 7378700 81657000 34222000 47435000 68120000 29999000 38121000 6413300 3394900 3018400 25769000 12385000 13384000 30389 985;2174 31947 158579;158580;158581;158582;158583;158584;158585;158586;158587;158588;158589;158590;158591;158592;158593;158594;158595;158596;158597;158598;158599;158600 159511;159512;159513;159514;159515;159516;159517;159518;159519;159520;159521;159522;159523;159524;159525;159526;159527;159528;159529;159530;159531;159532;159533;159534 159518 24 SIQMLTLLR DIKESIETMRTRLERSIQMLTLLRAFEARD RTRLERSIQMLTLLRAFEARDRNLQEGNLE R S I L R A 0 1 0 0 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 9 0 1073.6267 K7EIN4;K7EQ63;Q13445 K7EIN4 23 31 TMED1 Transmembrane emp24 domain-containing protein 1 yes no 2 0.0014358 81.548 By MS/MS By MS/MS By matching 2 3 1 1.1778 1.0504 20.439 6 Median 1.078 1.0287 8.3233 2 0 Median 1.5025 1.259 24.612 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1723 0.99463 NaN 1 0 Median 16057000 7174900 8882600 12220000 5638000 6582100 3708600 1476800 2231800 0 0 0 0 0 0 0 0 0 128710 60096 68615 30390 1361 31948 158601;158602;158603;158604;158605;158606 159535;159536;159537;159538;159539 159537 5 SIQSGPLK MVLGPAAYNVPLPKKSIQSGPLKISSVSEV NVPLPKKSIQSGPLKISSVSEVMKESKQPA K S I L K I 0 0 0 0 0 1 0 1 0 1 1 1 0 0 1 2 0 0 0 0 0 0 8 0 828.47052 Q16891;B9A067;C9J406;A0A087WYS0;D6RAW4 Q16891 103 110 IMMT MICOS complex subunit MIC60 yes no 2 0.0084743 62.717 By matching By MS/MS By matching 1 1 1 1.3182 1.1531 14.261 3 Median 1.3541 1.3731 NaN 1 0 Median 1.3182 1.1531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2394 1.035 NaN 1 0 Median 5313500 2377100 2936500 513000 184810 328190 4255200 1951900 2303300 0 0 0 0 0 0 0 0 0 545270 240320 304950 30391 3001 31949 158607;158608;158609 159540 159540 1 SIRPDNMSEYSK EMTKYHSDDYIKFLRSIRPDNMSEYSKQMQ FLRSIRPDNMSEYSKQMQRFNVGEDCPVFD R S I S K Q 0 1 1 1 0 0 1 0 0 1 0 1 1 0 1 3 0 0 1 0 0 0 12 1 1425.6558 Q13547;Q5TEE2;Q92769;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9 Q13547 78 89 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2;3 2.1447E-05 103.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 5 5 5 0.97463 0.93154 14 25 Median 1.0057 1.0099 4.1318 2 0 Median 1.0291 0.93921 10.256 4 0 Median 0.77901 0.84536 18.326 4 1 Median 1.0657 1 8.4153 5 1 Median 0.82362 0.92393 13.232 5 0 Median 0.97463 0.88526 19.711 5 0 Median 103420000 53455000 49961000 12944000 6510100 6434400 18785000 9271800 9512800 32848000 18429000 14419000 14822000 6739200 8083100 17196000 9127900 8068600 6821200 3377500 3443700 30392 2823;3555 31950 158610;158611;158612;158613;158614;158615;158616;158617;158618;158619;158620;158621;158622;158623;158624;158625;158626;158627;158628;158629;158630;158631;158632;158633;158634;158635 159541;159542;159543;159544;159545;159546;159547;159548;159549;159550;159551;159552;159553;159554;159555;159556;159557;159558;159559;159560;159561;159562;159563;159564;159565 159556 25 SIRPGLSPYR NFKTCEESSFCKRQRSIRPGLSPYRALLDS CKRQRSIRPGLSPYRALLDSLQLGPDSLTV R S I Y R A 0 2 0 0 0 0 0 1 0 1 1 0 0 0 2 2 0 0 1 0 0 0 10 1 1144.6353 Q14697 Q14697 52 61 GANAB Neutral alpha-glucosidase AB yes yes 2 0.002173 90.15 By MS/MS By MS/MS 6 2 0.78285 0.79822 14.423 8 Median 0.72822 0.74961 13.522 6 0 Median 0.98783 0.8956 6.9417 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257420000 130670000 126750000 89157000 50922000 38235000 168260000 79750000 88513000 0 0 0 0 0 0 0 0 0 0 0 0 30393 2896 31951 158636;158637;158638;158639;158640;158641;158642;158643 159566;159567;159568;159569;159570;159571;159572;159573;159574;159575 159572 10 SIRPLLEGR IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA TEIQHKSIRPLLEGRDLLAAAKTGSGKTLA K S I G R D 0 2 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 1 1039.6138 Q9NVP1 Q9NVP1 209 217 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00047981 146.69 By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 1.0358 1.0463 7.4343 7 Median NaN NaN NaN 0 0 Median 1.062 1.0507 NaN 1 0 Median 1.0358 1.1559 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92411 0.99968 8.2471 3 0 Median 1.1199 1.0012 6.237 2 0 Median 60900000 30135000 30765000 0 0 0 857530 392120 465410 13138000 6499900 6638100 0 0 0 35366000 17317000 18049000 11538000 5925700 5612600 30394 4137 31952 158644;158645;158646;158647;158648;158649;158650 159576;159577;159578;159579;159580 159577 4 SISADDDLQESSR DPEKGPVPTFQPFQRSISADDDLQESSRRP QRSISADDDLQESSRRPQRKSLYESFVSSS R S I S R R 1 1 0 3 0 1 1 0 0 1 1 0 0 0 0 4 0 0 0 0 0 0 13 0 1421.627 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 113 125 NELFE Negative elongation factor E yes no 2 2.6176E-05 93.258 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.99476 0.94296 6.8299 5 Median 0.97155 0.9694 NaN 1 0 Median 0.99478 0.86061 NaN 1 0 Median 0.99098 0.99877 NaN 1 0 Median 1.0349 0.90151 6.3579 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12484000 6175400 6308500 2479600 1181000 1298700 1873100 897070 976020 2258700 1193000 1065700 5872500 2904400 2968100 0 0 0 0 0 0 30395 2059 31953 158651;158652;158653;158654;158655 159581;159582;159583;159584;159585 159581 5 SISDMWTMVK NLVDLCASVAELDDKSISDMWTMVKQMTDV ELDDKSISDMWTMVKQMTDVLLTPATDALK K S I V K Q 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 2 1 1 0 1 0 0 10 0 1196.557 Q8N1F7;H3BVG0;H3BP95;H3BMX0;H3BPA9 Q8N1F7 219 228 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.037233 31.934 By matching By matching By MS/MS By matching 1 1 1 1 1.3407 1.254 9.182 4 Median 1.315 1.3263 NaN 1 0 Median 1.576 1.4226 NaN 1 0 Median 1.0836 1.1765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3668 1.1857 NaN 1 0 Median 19510000 9282400 10227000 1217500 549600 667940 755140 301160 453980 17405000 8371300 9033400 0 0 0 0 0 0 132280 60344 71933 30396 3356 31954 158656;158657;158658;158659 159586 159586 1 SISFHPSGDFILVGTQHPTLR AKRAFKYIQEAEMLRSISFHPSGDFILVGT SGDFILVGTQHPTLRLYDINTFQCFVSCNP R S I L R L 0 1 0 1 0 1 0 2 2 2 2 0 0 2 2 3 2 0 0 1 0 0 21 0 2308.1964 Q05048;A0A0A0MSZ9 Q05048 222 242 CSTF1 Cleavage stimulation factor subunit 1 yes no 3;4 2.5036E-26 145.88 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0049 0.93667 13.963 6 Median NaN NaN NaN 0 0 Median 1.0216 0.91012 NaN 1 0 Median 0.77878 0.75787 14.163 2 0 Median 1.1068 0.96415 0.0219 2 0 Median 0.98847 0.99564 NaN 1 0 Median NaN NaN NaN 0 0 Median 81979000 42917000 39062000 0 0 0 292670 126450 166220 77228000 40564000 36664000 2845800 1394500 1451300 1612500 831570 780950 0 0 0 30397 2716 31955 158660;158661;158662;158663;158664;158665 159587;159588;159589;159590 159589 4 SISFIPPDGEFELMR TFHQCVRLSKFDSERSISFIPPDGEFELMR SISFIPPDGEFELMRYRTTKDIILPFRVIP R S I M R Y 0 1 0 1 0 0 2 1 0 2 1 0 1 2 2 2 0 0 0 0 0 0 15 0 1736.8444 A0A087WY71;E9PFW3;Q96CW1;C9JJ47 A0A087WY71 261 275 AP2M1 AP-2 complex subunit mu yes no 2 3.3742E-05 84.658 By MS/MS By MS/MS 2 1 0.74934 0.7548 56.117 3 Median 0.46015 0.47007 69.305 2 0 Median NaN NaN NaN 0 0 Median 0.74934 0.7548 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11375000 6407200 4967700 9381400 5232800 4148600 0 0 0 1993400 1174300 819090 0 0 0 0 0 0 0 0 0 30398 78 31956;31957 158666;158667;158668 159591;159592;159593 159592 40 3 SISGPSVGVMEMR FLMGDLPAPVTPQPRSISGPSVGVMEMRSP PRSISGPSVGVMEMRSPLLAGGSPPQPVVP R S I M R S 0 1 0 0 0 0 1 2 0 1 0 0 2 0 1 3 0 0 0 2 0 0 13 0 1348.6479 Q8NFH5;F8WCF5;F8WEL4;C9IYQ7;C9JIY9;C9JWU7 Q8NFH5 53 65 NUP35 Nucleoporin NUP53 yes no 2 2.6176E-05 133.81 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.97988 0.87902 12.707 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79106 0.77597 9.8986 2 0 Median 1.1453 0.975 0.94968 2 0 Median 0.74687 0.76953 NaN 1 0 Median 1.1217 0.92845 NaN 1 0 Median 39461000 20033000 19429000 0 0 0 0 0 0 26720000 13727000 12993000 3597300 1603800 1993500 6644500 3489900 3154600 2500000 1212100 1287900 30399 3437 31958;31959 158669;158670;158671;158672;158673;158674 159594;159595;159596;159597;159598;159599 159595 1727 6 SISISVAGGGGGFGAAGGFGGR GGFGSRSLVGLGGTKSISISVAGGGGGFGA GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG K S I G R G 3 1 0 0 0 0 0 10 0 2 0 0 0 2 0 3 0 0 0 1 0 0 22 0 1837.9071 CON__P35908;CON__P35908v2;P35908 CON__P35908 71 92 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.2561E-56 162.32 By MS/MS By MS/MS By MS/MS By MS/MS 5 1 1 3 0.26499 0.26295 91.465 8 Median 0.24836 0.24001 68.618 5 5 Median NaN NaN NaN 0 0 Median 1.3281 1.4588 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.21012 0.21784 46.026 2 2 Median NaN NaN NaN 0 0 Median 56985000 50596000 6389400 21387000 17359000 4028200 0 0 0 3276800 1241500 2035400 2251800 2251800 0 30069000 29744000 325770 0 0 0 + 30400 764;765 31960 158675;158676;158677;158678;158679;158680;158681;158682;158683;158684 159600;159601;159602;159603;159604;159605;159606;159607;159608;159609;159610;159611;159612 159609 13 SISISVAR GGFGSRSLVNLGGSKSISISVARGGGRGSG VNLGGSKSISISVARGGGRGSGFGGGYGGG K S I A R G 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 P04264;CON__P04264 P04264 75 82 KRT1 Keratin, type II cytoskeletal 1 yes no 1;2 6.6502E-13 143.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 11 9 6 7 4 16.759 14.044 127.35 46 Median 10.854 11.021 111.54 9 9 Median 7.1637 5.9691 67.732 11 11 Median 62.156 60.431 105.04 9 9 Median 14.983 12.828 114.82 6 6 Median 42.872 44.935 77.45 7 7 Median 9.9795 8.1692 97.213 4 4 Median 58482000000 2126500000 56356000000 12467000000 482580000 11984000000 8048900000 764490000 7284400000 15600000000 160140000 15440000000 6641500000 279420000 6362000000 13100000000 297000000 12803000000 2625300000 142850000 2482500000 + 30401 1848 31961 158685;158686;158687;158688;158689;158690;158691;158692;158693;158694;158695;158696;158697;158698;158699;158700;158701;158702;158703;158704;158705;158706;158707;158708;158709;158710;158711;158712;158713;158714;158715;158716;158717;158718;158719;158720;158721;158722;158723;158724;158725;158726;158727;158728;158729;158730;158731 159613;159614;159615;159616;159617;159618;159619;159620;159621;159622;159623;159624;159625;159626;159627;159628;159629;159630;159631;159632;159633;159634;159635;159636;159637;159638;159639;159640;159641;159642;159643;159644;159645;159646;159647;159648;159649;159650;159651;159652;159653;159654;159655;159656;159657;159658;159659;159660;159661;159662;159663;159664 159651 52 SISLYYTGEK EKTFEEKQGTEIDGRSISLYYTGEKGQNQD EIDGRSISLYYTGEKGQNQDYRGGKNSTWS R S I E K G 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 P19338;H7BY16 P19338 458 467 NCL Nucleolin yes no 2 0.00034968 116.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 4 5 7 1.2264 1.1065 12.84 29 Median 1.2403 1.0947 17.82 5 1 Median 1.2555 1.0826 6.4401 6 2 Median 1.2428 1.2753 3.8484 2 0 Median 1.3222 1.1389 4.4131 4 0 Median 1.1732 1.1739 2.855 5 0 Median 1.2117 0.98676 13.191 7 2 Median 752030000 345550000 406480000 232770000 105920000 126840000 95083000 41767000 53316000 144510000 65973000 78540000 43411000 19054000 24356000 141830000 67505000 74320000 94429000 45323000 49106000 30402 2063 31962 158732;158733;158734;158735;158736;158737;158738;158739;158740;158741;158742;158743;158744;158745;158746;158747;158748;158749;158750;158751;158752;158753;158754;158755;158756;158757;158758;158759;158760 159665;159666;159667;159668;159669;159670;159671;159672;159673;159674;159675;159676;159677;159678;159679;159680;159681;159682;159683;159684;159685;159686;159687;159688;159689;159690;159691;159692;159693;159694;159695;159696;159697;159698;159699;159700;159701;159702 159671 37 SISLYYTGEKGQNQDYR EKTFEEKQGTEIDGRSISLYYTGEKGQNQD SLYYTGEKGQNQDYRGGKNSTWSGESKTLV R S I Y R G 0 1 1 1 0 2 1 2 0 1 1 1 0 0 0 2 1 0 3 0 0 0 17 1 2020.949 P19338;H7BY16 P19338 458 474 NCL Nucleolin yes no 2;3 2.8724E-12 135.45 By MS/MS By MS/MS 3 1 0.82846 0.86991 12.379 4 Median 0.84684 0.86903 14.59 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79162 0.87078 NaN 1 1 Median NaN NaN NaN 0 0 Median 54098000 29400000 24698000 42088000 22254000 19835000 0 0 0 0 0 0 0 0 0 12010000 7146200 4863600 0 0 0 30403 2063 31963 158761;158762;158763;158764 159703;159704;159705;159706;159707 159703 5 SISNPPGSNLR GTASLQNFNISNLQKSISNPPGSNLRTT__ NLQKSISNPPGSNLRTT_____________ K S I L R T 0 1 2 0 0 0 0 1 0 1 1 0 0 0 2 3 0 0 0 0 0 0 11 0 1140.5887 F5GWT4;Q9H4A3 F5GWT4 2122 2132 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 0.026889 50.473 By MS/MS 1 0.3972 0.33749 NaN 1 Median NaN NaN NaN 0 0 Median 0.3972 0.33749 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3422900 2313400 1109500 0 0 0 3422900 2313400 1109500 0 0 0 0 0 0 0 0 0 0 0 0 30404 1001 31964 158765 159708 159708 1 SISQHYSKPR SQITAIEKTFEDAQKSISQHYSKPRVTPVE EDAQKSISQHYSKPRVTPVEVMPVFPDFKM K S I P R V 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 3 0 0 1 0 0 0 10 1 1201.6204 Q8N7H5;B4DGJ5 Q8N7H5 189 198 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 0.025572 24.853 By matching By MS/MS By MS/MS 1 1 1 0.9518 0.96786 2.0748 3 Median 0.9518 0.97046 NaN 1 0 Median 1.0046 0.93502 NaN 1 0 Median 0.90696 0.96786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 837300 435770 401530 127120 60712 66406 361000 177680 183320 349190 197380 151800 0 0 0 0 0 0 0 0 0 30405 3393 31965 158766;158767;158768 159709;159710 159709 2 SISQSISGQK ADRQREYLLDMIPPRSISQSISGQK_____ MIPPRSISQSISGQK_______________ R S I Q K - 0 0 0 0 0 2 0 1 0 2 0 1 0 0 0 4 0 0 0 0 0 0 10 0 1033.5404 A0A0U1RRM1;Q8WXI9 A0A0U1RRM1 568 577 GATAD2B Transcriptional repressor p66-beta yes no 2 0.014222 39.022 By MS/MS By MS/MS 1 1 1.1735 1.1151 14.529 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94727 1.0062 NaN 1 0 Median 1.4537 1.2357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3224100 1386000 1838000 0 0 0 0 0 0 2065600 954410 1111200 1158500 431630 726870 0 0 0 0 0 0 30406 311 31966 158769;158770 159711;159712 159711 2 SISSPSVSSETMDKPVDLSTR VPSFCKSEEPDSITKSISSPSVSSETMDKP VSSETMDKPVDLSTRKEIDTDSTSQGESKI K S I T R K 0 1 0 2 0 0 1 0 0 1 1 1 1 0 2 7 2 0 0 2 0 0 21 1 2222.0736 P49792 P49792 2802 2822 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 7.0022E-23 111.45 By matching By MS/MS By MS/MS By MS/MS 1 2 4 4 0.7159 0.73091 13.479 11 Median 0.58768 0.59354 NaN 1 0 Median 0.76356 0.71821 11.425 2 0 Median 0.65342 0.7603 14.407 4 0 Median 0.74566 0.70709 9.3181 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115150000 65383000 49772000 4565100 2551300 2013800 8121100 4697900 3423200 86361000 49230000 37131000 16107000 8903200 7204100 0 0 0 0 0 0 30407 2401 31967;31968 158771;158772;158773;158774;158775;158776;158777;158778;158779;158780;158781 159713;159714;159715;159716;159717;159718;159719;159720;159721;159722;159723;159724;159725 159717 1117 13 SISSPSVSSETMDKPVDLSTRK VPSFCKSEEPDSITKSISSPSVSSETMDKP SSETMDKPVDLSTRKEIDTDSTSQGESKIV K S I R K E 0 1 0 2 0 0 1 0 0 1 1 2 1 0 2 7 2 0 0 2 0 0 22 2 2350.1686 P49792 P49792 2802 2823 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3;4 3.0458E-18 104.18 By matching By MS/MS By matching By matching 3 4 1 1 0.75125 0.91842 21.367 9 Median 0.84394 0.91842 25.909 3 0 Median NaN NaN NaN 0 0 Median 0.7276 0.96531 7.4638 4 0 Linear 0.90928 0.96782 NaN 1 0 Median 1.2227 1.4375 NaN 1 0 Median NaN NaN NaN 0 0 Median 173570000 96690000 76884000 13522000 6992500 6529200 0 0 0 155270000 87626000 67647000 827450 369550 457900 3951200 1701600 2249600 0 0 0 30408 2401 31969 158782;158783;158784;158785;158786;158787;158788;158789;158790 159726;159727;159728;159729;159730;159731;159732 159729 7 SISTSLPVLDLIDAIAPNAVR KSANKKTSISSFKDKSISTSLPVLDLIDAI PVLDLIDAIAPNAVRQEMIRRENLSDEDKL K S I V R Q 3 1 1 2 0 0 0 0 0 3 3 0 0 0 2 3 1 0 0 2 0 0 21 0 2164.2103 Q14651 Q14651 546 566 PLS1 Plastin-1 yes yes 2;3 2.3457E-05 38.787 By MS/MS By matching 2 2 0.81193 0.82488 6.0208 4 Median 0.79309 0.79715 3.0896 2 0 Median NaN NaN NaN 0 0 Median 0.8376 0.86716 5.3241 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2526300 1344900 1181400 2312000 1236900 1075200 0 0 0 214230 108000 106230 0 0 0 0 0 0 0 0 0 30409 2884 31970 158791;158792;158793;158794 159733;159734 159733 2 SISVIDSPGILSGEK LNRFMCSQLPNQVLKSISVIDSPGILSGEK SISVIDSPGILSGEKQRISRGYDFCQVLQW K S I E K Q 0 0 0 1 0 0 1 2 0 3 1 1 0 0 1 4 0 0 0 1 0 0 15 0 1500.8035 Q9H223 Q9H223 151 165 EHD4 EH domain-containing protein 4 yes yes 2 1.2138E-07 130.56 By MS/MS By MS/MS 1 1 0.89574 0.85604 13.461 2 Median 0.82667 0.77832 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97058 0.94153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26293000 13975000 12318000 10471000 5827700 4643500 0 0 0 15822000 8147300 7674800 0 0 0 0 0 0 0 0 0 30410 3939 31971 158795;158796 159735;159736;159737 159737 3 SISVNQWGSQLGLSVLSK MMFVHTCRVGQSEIRSISVNQWGSQLGLSV VNQWGSQLGLSVLSKLSQLYCSLVWESTVL R S I S K L 0 0 1 0 0 2 0 2 0 1 3 1 0 0 0 5 0 1 0 2 0 0 18 0 1902.0211 Q7Z6Z7 Q7Z6Z7 919 936 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 4.9791E-06 63.76 By MS/MS By MS/MS 1 1 1.1676 1.0842 9.6611 2 Median 1.0239 1.0126 NaN 1 0 Median 1.3316 1.1608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6097300 2840000 3257300 2298100 1166300 1131800 3799200 1673700 2125500 0 0 0 0 0 0 0 0 0 0 0 0 30411 3253 31972 158797;158798 159738;159739;159740 159738 3 SITADPLDYR YSDRHYDLNQLLEPRSITADPLDYRLSWHL LLEPRSITADPLDYRLSWHLWEVLRALNYT R S I Y R L 1 1 0 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 10 0 1149.5666 P52948;H7C3P6;H0YDF4 P52948 1514 1523 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00037374 107.57 By matching By MS/MS By MS/MS By matching 1 2 3 1 1.0513 0.9895 36.229 7 Median NaN NaN NaN 0 0 Median 1.1535 0.99719 NaN 1 0 Median 0.92339 0.99595 4.5588 2 0 Median 1.1633 0.9895 51.109 3 0 Plateau NaN NaN NaN 0 0 Median 1.3866 1.1289 NaN 1 0 Median 39878000 20611000 19268000 0 0 0 1460100 845940 614180 33368000 17466000 15902000 3603900 1749300 1854600 0 0 0 1446300 549690 896630 30412 2462 31973 158799;158800;158801;158802;158803;158804;158805 159741;159742;159743;159744;159745;159746 159741 6 SITHDIEEK QPTSEERIPKTIEIKSITHDIEEKGVRMKL KTIEIKSITHDIEEKGVRMKLTVIDTPGFG K S I E K G 0 0 0 1 0 0 2 0 1 2 0 1 0 0 0 1 1 0 0 0 0 0 9 0 1070.5244 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9;K7EJZ2;K7ENQ5;K7EN52;K7EKN4;K7EIR4 Q9UHD8 344 352 SEPT9 Septin-9 yes no 2 0.00014996 144.12 By matching By MS/MS By MS/MS By matching By MS/MS 1 4 4 1 2 1.3594 1.1553 12.184 12 Median NaN NaN NaN 0 0 Median 1.7125 1.4755 NaN 1 0 Median 1.1075 1.0822 3.2912 4 0 Linear 1.3926 1.1989 5.0776 4 0 Median 1.3578 1.4447 NaN 1 0 Median 1.2909 1.0849 15.094 2 0 Median 58919000 26182000 32737000 0 0 0 2730900 1043800 1687100 44093000 20119000 23974000 8895500 3664400 5231100 1489800 672150 817600 1709300 682130 1027100 30413 4276 31974 158806;158807;158808;158809;158810;158811;158812;158813;158814;158815;158816;158817 159747;159748;159749;159750;159751;159752;159753;159754;159755;159756 159748 10 SITNTTVCTK DDNRILRPWQSSETRSITNTTVCTKCGGAG SSETRSITNTTVCTKCGGAGHIASDCKFQR R S I T K C 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 1 4 0 0 1 0 0 10 0 1123.5543 Q15637 Q15637 272 281 SF1 Splicing factor 1 yes yes 2 0.0017405 62.823 By MS/MS By matching 1 1 1.1712 1.1444 17.885 2 Median NaN NaN NaN 0 0 Median 1.1297 1.0085 NaN 1 0 Median 1.2142 1.2987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2011300 914310 1097000 0 0 0 1199100 536340 662800 812180 377970 434220 0 0 0 0 0 0 0 0 0 30414 2959 31975 158818;158819 159757;159758 159757 2 SITTDDWK FLGFLKAYVEKFSYKSITTDDWKDFLYSYF VEKFSYKSITTDDWKDFLYSYFKDKVDVLN K S I W K D 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 0 0 0 8 0 964.45018 P09960 P09960 419 426 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.01108 75.854 By MS/MS 1 1.3711 1.1705 NaN 1 Median NaN NaN NaN 0 0 Median 1.3711 1.1705 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4104500 1710100 2394400 0 0 0 4104500 1710100 2394400 0 0 0 0 0 0 0 0 0 0 0 0 30415 1924 31976 158820 159759 159759 1 SITVFFK IGAFISIGFSYAFPKSITVFFKEIEGIFHA GFSYAFPKSITVFFKEIEGIFHATTSEVSW K S I F K E 0 0 0 0 0 0 0 0 0 1 0 1 0 2 0 1 1 0 0 1 0 0 7 0 840.47454 P53985;Q5T8R5;Q5T8R3;Q5T8R4 P53985 39 45 SLC16A1 Monocarboxylate transporter 1 yes no 2 0.044246 43 By matching By MS/MS 2 3 1.3856 1.2109 10.209 5 Median 1.0563 1.0595 8.7985 2 0 Median 1.3881 1.244 3.1169 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8166400 3937800 4228500 4360000 2131200 2228800 3806300 1806600 1999700 0 0 0 0 0 0 0 0 0 0 0 0 30416 2476 31977 158821;158822;158823;158824;158825 159760 159760 1 SITVLVEGENTR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ IPRSITVLVEGENTRIAQPGDHVSVTGIFL R S I T R I 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1316.6936 P33993;C9J8M6 P33993 252 263 MCM7 DNA replication licensing factor MCM7 yes no 2 1.5428E-09 174.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 0.96748 0.91024 8.6398 6 Median 0.93738 0.88606 NaN 1 0 Median 1.2122 1.0484 NaN 1 0 Median 0.8657 0.86899 NaN 1 0 Median 1.0851 0.93508 NaN 1 0 Median 0.90586 0.93831 NaN 1 0 Median 0.99853 0.81265 NaN 1 0 Median 138170000 71397000 66773000 53784000 27652000 26133000 23759000 10914000 12845000 50435000 28013000 22422000 2738900 1253600 1485300 6377700 3047900 3329800 1073800 515810 557960 30417 2225 31978 158826;158827;158828;158829;158830;158831 159761;159762;159763;159764;159765;159766;159767;159768;159769;159770;159771 159761 11 SITYSLENK ADPEALAEILLETCKSITYSLENKTYSSVR LLETCKSITYSLENKTYSSVRTEALSVIEL K S I N K T 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 2 1 0 1 0 0 0 9 0 1053.5342 Q5VYK3;J3KN16 Q5VYK3 1770 1778 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.014917 68.224 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30418 3116 31979 158832 159772 159772 1 SIVAVEPR HRDGFPQPRRRGRKKSIVAVEPRSLIQGAF RRRGRKKSIVAVEPRSLIQGAFQGCSVSGM K S I P R S 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 2 0 0 8 0 869.49707 Q5VZL5;H7C1I7 Q5VZL5 1181 1188 ZMYM4 Zinc finger MYM-type protein 4 yes no 2 0.02114 55.441 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 6 2 1 0.017781 0.015723 84.323 18 Median 0.024412 0.023247 NaN 1 0 Median 0.029284 0.024053 70.4 4 3 Median 0.0066438 0.0065481 54.997 4 4 Median 0.018892 0.015821 100.21 6 6 Median 0.014932 0.014865 117.67 2 2 Median 0.025847 0.020777 NaN 1 1 Median 991360000 981500000 9853200 13488000 13184000 303630 90407000 87819000 2588700 638980000 636240000 2744900 123870000 122160000 1709200 116840000 114530000 2311400 7768600 7573100 195440 30419 3117 31980 158833;158834;158835;158836;158837;158838;158839;158840;158841;158842;158843;158844;158845;158846;158847;158848;158849;158850;158851;158852 159773;159774;159775;159776;159777;159778;159779;159780;159781;159782;159783;159784;159785;159786;159787;159788;159789;159790;159791;159792;159793;159794;159795;159796 159773 24 SIVDKEGVPR LEEFELLGKAYGKAKSIVDKEGVPRFYIRI YGKAKSIVDKEGVPRFYIRILADLEDYLNE K S I P R F 0 1 0 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 0 2 0 0 10 1 1098.6033 Q99613;B5ME19;H3BPE4;H3BPE3;H3BTY8 Q99613 95 104 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.0019552 108.15 By MS/MS By MS/MS By matching 1 1 1 1.0356 1.0184 2.8263 3 Median 1.0119 1.0528 NaN 1 0 Median 1.0968 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0356 0.99525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16090000 7780400 8309300 4375100 1957000 2418100 11300000 5634400 5665500 0 0 0 414780 189050 225730 0 0 0 0 0 0 30420 3757 31981 158853;158854;158855 159797;159798;159799 159798 3 SIVDNWPENHVK PKGLFISISDRGHVRSIVDNWPENHVKAVV HVRSIVDNWPENHVKAVVVTDGERILGLGD R S I V K A 0 0 2 1 0 0 1 0 1 1 0 1 0 0 1 1 0 1 0 2 0 0 12 0 1436.7048 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37 A0A1W2PPH1 145 156 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2;3 0.00041157 79.489 By MS/MS By MS/MS 2 1 1.2539 1.1734 17.174 3 Median 1.1446 1.0731 12.644 2 0 Median 1.6326 1.3833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33604000 15254000 18350000 28208000 13316000 14893000 5395500 1938500 3457100 0 0 0 0 0 0 0 0 0 0 0 0 30421 337 31982 158856;158857;158858 159800;159801;159802;159803 159802 4 SIVDYKPNLDLLEQQHQLIQEALIFDNK GTLEDQLSHLKQYERSIVDYKPNLDLLEQQ QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ R S I N K H 1 0 2 3 0 4 2 0 1 3 5 2 0 1 1 1 0 0 1 1 0 0 28 1 3323.7402 O43707;F5GXS2;H7C144 O43707 696 723 ACTN4 Alpha-actinin-4 yes no 3;4 3.748E-05 30.542 By MS/MS 4 0.76972 0.7396 10.407 4 Median NaN NaN NaN 0 0 Median 0.76972 0.7396 10.407 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16754000 8478900 8275500 0 0 0 16754000 8478900 8275500 0 0 0 0 0 0 0 0 0 0 0 0 30422 1585 31983 158859;158860;158861;158862 159804;159805;159806;159807 159805 4 SIVEEIEDLVAR ALQTASHLSQQADLRSIVEEIEDLVARLDE DLRSIVEEIEDLVARLDELGGVYLQFEEGL R S I A R L 1 1 0 1 0 0 3 0 0 2 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1371.7246 P04844;Q5JYR4;Q5JYR7;F2Z3K5 P04844 179 190 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2 5.1455E-06 100.48 By MS/MS By MS/MS By MS/MS 2 4 1 1.1875 1.0847 8.4248 7 Median 1.0128 1.0224 5.4874 2 0 Median 1.3054 1.116 7.2899 4 0 Median 1.1875 1.234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9699500 4186400 5513100 2236100 1006100 1230100 3547800 1486600 2061200 3915600 1693700 2221900 0 0 0 0 0 0 0 0 0 30423 1854 31984 158863;158864;158865;158866;158867;158868;158869 159808;159809;159810;159811;159812;159813 159811 6 SIVEHVASK QERNVQVFLISGGFRSIVEHVASKLNIPAT ISGGFRSIVEHVASKLNIPATNVFANRLKF R S I S K L 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 2 0 0 0 2 0 0 9 0 968.5291 C9JBI3;P78330 C9JBI3 114 122 PSPH Phosphoserine phosphatase yes no 2 0.049787 31.074 By MS/MS By MS/MS 1 1 0.94513 0.85239 13.291 2 Median 0.98401 0.93639 NaN 1 0 Median 0.90779 0.77593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2994300 1534000 1460300 2246200 1121100 1125100 748140 412880 335260 0 0 0 0 0 0 0 0 0 0 0 0 30424 688 31985 158870;158871 159814;159815 159814 2 SIVFGIHPR HIVLDSVRRFSGLERSIVFGIHPRTADPAI FSGLERSIVFGIHPRTADPAILPNVLICLA R S I P R T 0 1 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1024.5818 Q7Z7L1;Q68D06 Q7Z7L1 863 871 SLFN11;SLFN13 Schlafen family member 11;Schlafen family member 13 yes no 2 0.050756 44.447 By MS/MS 1 1.3849 1.1871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3849 1.1871 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 775750 324540 451210 0 0 0 0 0 0 0 0 0 775750 324540 451210 0 0 0 0 0 0 30425 3262 31986 158872 159816 159816 1 SIVGEIVR LVAAVSLWATDYGMKSIVGEIVREIGQKCP ATDYGMKSIVGEIVREIGQKCPQELSRDPS K S I V R E 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 871.51272 Q15021;E7EN77 Q15021 273 280 NCAPD2 Condensin complex subunit 1 yes no 2 0.0042476 82.671 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 4 1.1084 0.95835 25.264 11 Median 1.2288 1.1544 NaN 1 0 Median 1.5853 1.3874 51.069 2 0 Median 1.1084 1.2178 NaN 1 0 Median 0.99741 0.8635 10.753 2 0 Median 1.0967 1.1469 NaN 1 0 Median 1.1027 0.9078 5.0185 4 0 Median 23205000 10669000 12536000 9784000 4280000 5504000 3149800 1421000 1728800 3405500 1660800 1744700 2910300 1495600 1414800 1820200 851210 968970 2135400 960160 1175200 30426 2915 31987 158873;158874;158875;158876;158877;158878;158879;158880;158881;158882;158883 159817;159818;159819;159820;159821 159817 5 SIVGMTMYNQATQEIAKPSELLTSVR PREYLTSHLEIRFTKSIVGMTMYNQATQEI TQEIAKPSELLTSVRAYMTVLQSIENYVQI K S I V R A 2 1 1 0 0 2 2 1 0 2 2 1 2 0 1 3 3 0 1 2 0 0 26 1 2866.4569 Q9Y2A7 Q9Y2A7 719 744 NCKAP1 Nck-associated protein 1 yes yes 3 0.0039904 24.096 By MS/MS 1 0.85753 0.88993 NaN 1 Median 0.85753 0.88993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2375400 1227700 1147700 2375400 1227700 1147700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30427 4383 31988 158884 159822;159823 159823 2 SIVIRPLEPQPAPHLAR VFHHWQIVPGDPLDKSIVIRPLEPQPAPHL VIRPLEPQPAPHLAREFMIKTRRRKGLSED K S I A R E 2 2 0 0 0 1 1 0 1 2 2 0 0 0 4 1 0 0 0 1 0 0 17 1 1893.0949 Q15029;K7EP67 Q15029 915 931 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2;3;4 3.9625E-31 150.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 5 2 8 1 0.5193 0.56011 18.72 20 Median 0.60725 0.67467 12.153 3 1 Median 0.81105 0.78192 NaN 1 0 Median 0.45033 0.54769 5.9606 5 1 Median 0.67592 0.66172 5.9587 2 1 Median 0.51482 0.55274 7.5552 8 1 Median 1.1631 1.0514 NaN 1 0 Median 194390000 126800000 67588000 33397000 20909000 12488000 2472700 1321000 1151700 71343000 47688000 23655000 10938000 6249800 4688000 75871000 50514000 25358000 365140 117020 248120 30428 2917 31989 158885;158886;158887;158888;158889;158890;158891;158892;158893;158894;158895;158896;158897;158898;158899;158900;158901;158902;158903;158904 159824;159825;159826;159827;159828;159829;159830;159831;159832;159833;159834;159835;159836;159837;159838;159839;159840;159841;159842;159843;159844;159845;159846;159847;159848 159828 25 SIVNYKPK GTLEDQLSHLRQYEKSIVNYKPKIDQLEGD HLRQYEKSIVNYKPKIDQLEGDHQLIQEAL K S I P K I 0 0 1 0 0 0 0 0 0 1 0 2 0 0 1 1 0 0 1 1 0 0 8 1 947.54402 P12814;H9KV75;H7C5W8;H0YJW3;H0YJ11 P12814 677 684 ACTN1 Alpha-actinin-1 yes no 2 0.028443 73.039 By matching By MS/MS 1 2 1.0426 0.9819 9.1777 3 Median 1.0813 1.1436 NaN 1 0 Median 1.0284 0.97591 0.86637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13756000 6396200 7359600 2078100 950860 1127200 11678000 5445300 6232300 0 0 0 0 0 0 0 0 0 0 0 0 30429 1983 31990 158905;158906;158907 159849;159850 159849 2 SIVSESDVSSFEIQHSGFVK NLQVDGGAECLVEIRSIVSESDVSSFEIQH SDVSSFEIQHSGFVKQLLLYLTSKSEKDAV R S I V K Q 0 0 0 1 0 1 2 1 1 2 0 1 0 2 0 6 0 0 0 3 0 0 20 0 2181.059 Q14669 Q14669 1146 1165 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 6.3993E-09 76.768 By matching By matching By MS/MS By matching 1 1 1 1 0.87123 0.89649 46.503 4 Median 0.76658 0.7323 NaN 1 0 Median 0.66167 0.57278 NaN 1 0 Median 0.99018 1.0975 NaN 1 0 Median 1.7331 1.6509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11794000 5632100 6162300 2834100 1496900 1337200 539830 263520 276310 8188200 3791000 4397100 232380 80682 151700 0 0 0 0 0 0 30430 2886 31991 158908;158909;158910;158911 159851;159852 159852 2 SIVSVGDPK KKPKMSDEEILEKLRSIVSVGDPKKKYTRF ILEKLRSIVSVGDPKKKYTRFEKIGQGASG R S I P K K 0 0 0 1 0 0 0 1 0 1 0 1 0 0 1 2 0 0 0 2 0 0 9 0 900.49165 Q13153;E9PM17;B3KNX7 Q13153 259 267 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase no no 2 0.01772 41.448 By MS/MS By matching 1 1 0.7636 0.69042 44.943 2 Median 0.52337 0.50246 NaN 1 0 Median 1.1141 0.94871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8609300 4995000 3614300 4158300 2713200 1445100 4451000 2281800 2169200 0 0 0 0 0 0 0 0 0 0 0 0 30431 2791 31992 158912;158913 159853 159853 1 SIVTDLVSQMDPHGR AIILCIQDGSVDAERSIVTDLVSQMDPHGR SIVTDLVSQMDPHGRRTIFVLTKVDLAEKN R S I G R R 0 1 0 2 0 1 0 1 1 1 1 0 1 0 1 2 1 0 0 2 0 0 15 0 1653.8145 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4 A0A2R8Y3X5 340 354 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 4.6482E-09 119.76 By MS/MS By matching 1 1 1.0072 0.85851 19.211 2 Median NaN NaN NaN 0 0 Median 1.1349 0.98343 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89383 0.74946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3529200 1392000 2137100 0 0 0 3268600 1258700 2009900 0 0 0 260510 133330 127190 0 0 0 0 0 0 30432 357 31993 158914;158915 159854;159855 159854 2 SIVWYPPWAR YNDWSDDDDDSNESKSIVWYPPWARIGTEA SNESKSIVWYPPWARIGTEAGTRARARARA K S I A R I 1 1 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 2 1 1 0 0 10 0 1273.6608 Q9UH62;H3BV87 Q9UH62 72 81 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes no 2 0.0016661 63.486 By MS/MS By matching By matching By matching 1 1 1 1 0.85934 0.88426 16.528 3 Median 0.77427 0.7709 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85934 0.88426 NaN 1 0 Median 1.263 1.0713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4043300 2172800 1870500 3591800 1974600 1617200 133210 83134 50071 172910 73446 99464 145360 41622 103730 0 0 0 0 0 0 30433 4269 31994 158916;158917;158918;158919 159856;159857 159857 2 SIYDDISSPGLGSTPLTSR VVPAHKDKSGAPPVRSIYDDISSPGLGSTP DISSPGLGSTPLTSRRQPNISVMQSPLVGV R S I S R R 0 1 0 2 0 0 0 2 0 2 2 0 0 0 2 5 2 0 1 0 0 0 19 0 1964.9691 Q8NFH5;F8WCF5;F8WEL4;C9IYQ7 Q8NFH5 93 111 NUP35 Nucleoporin NUP53 yes no 2 1.1244E-07 66.004 By MS/MS By MS/MS By MS/MS 2 3 1 0.98316 0.81679 24.879 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95387 0.97947 43.824 2 1 Median 1.0437 0.85908 6.4328 3 0 Median 0.63321 0.6546 NaN 1 0 Median NaN NaN NaN 0 0 Median 38735000 20540000 18195000 0 0 0 0 0 0 19151000 10137000 9013900 13530000 7006500 6523900 6053400 3395800 2657600 0 0 0 30434 3437 31995 158920;158921;158922;158923;158924;158925 159858;159859;159860;159861;159862;159863;159864;159865 159860 8 SIYDPMGVK MGDVVIFKIMKGKIKSIYDPMGVKSLESML MKGKIKSIYDPMGVKSLESMLNKSALDPTP K S I V K S 0 0 0 1 0 0 0 1 0 1 0 1 1 0 1 1 0 0 1 1 0 0 9 0 1008.495 Q9UK61 Q9UK61 250 258 FAM208A Protein FAM208A yes yes 2 0.015787 43.246 By MS/MS 1 1.2457 1.3133 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2457 1.3133 NaN 1 0 Median NaN NaN NaN 0 0 Median 2849300 1259100 1590200 0 0 0 0 0 0 0 0 0 0 0 0 2849300 1259100 1590200 0 0 0 30435 4307 31996 158926 159866 159866 1 SIYESSLSIGNFASR EVPGADCLLSKEQLRSIYESSLSIGNFASR SIYESSLSIGNFASRLLVHLFPELFTHENL R S I S R L 1 1 1 0 0 0 1 1 0 2 1 0 0 1 0 5 0 0 1 0 0 0 15 0 1629.7999 Q5T5X7 Q5T5X7 562 576 BEND3 BEN domain-containing protein 3 yes yes 2 0.00024118 66.267 By MS/MS 1 0.87635 0.94019 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87635 0.94019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3524600 1741900 1782700 0 0 0 0 0 0 3524600 1741900 1782700 0 0 0 0 0 0 0 0 0 30436 3090 31997 158927 159867 159867 1 SIYFSSPK RERCLGPPTTPGPYRSIYFSSPKGHLTRLG TTPGPYRSIYFSSPKGHLTRLGLEFFDQPA R S I P K G 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 3 0 0 1 0 0 0 8 0 927.47018 P29372;A2IDA3 P29372 73 80 MPG DNA-3-methyladenine glycosylase yes no 2 0.014044 51.854 By MS/MS By MS/MS 1 1 0.96432 0.86458 4.5915 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9327 0.89312 NaN 1 0 Median 0.99701 0.83697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11731000 6062700 5668200 0 0 0 0 0 0 4531600 2334600 2197000 7199300 3728100 3471200 0 0 0 0 0 0 30437 2170 31998 158928;158929 159868;159869;159870 159870 3 SIYGEKFEDENFILK CQGGDFTRHNGTGGKSIYGEKFEDENFILK SIYGEKFEDENFILKHTGPGILSMANAGPN K S I L K H 0 0 1 1 0 0 3 1 0 2 1 2 0 2 0 1 0 0 1 0 0 0 15 1 1830.904 P62937;F8WE65;C9J5S7 P62937 77 91 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2;3 2.0701E-09 163.51 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 7 4 3 1.0566 1.0524 89.176 20 Median 1.0453 1.0376 3.0057 4 0 Median 1.2421 1.0988 1.1683 2 0 Median 1.0124 1.0353 146.72 7 0 Median 1.349 1.2258 24.241 4 0 Linear 1.0799 1.2416 44.242 3 0 Median NaN NaN NaN 0 0 Median 3229100000 2041100000 1188000000 507890000 232870000 275020000 54915000 23577000 31338000 2567700000 1739300000 828490000 6172400 2652400 3520100 92389000 42722000 49667000 0 0 0 30438 2611 31999 158930;158931;158932;158933;158934;158935;158936;158937;158938;158939;158940;158941;158942;158943;158944;158945;158946;158947;158948;158949 159871;159872;159873;159874;159875;159876;159877;159878;159879;159880;159881;159882;159883;159884;159885 159881 15 SIYGERFPDENFK IQGGDFTRGDGTGGKSIYGERFPDENFKLK GKSIYGERFPDENFKLKHYGPGWVSMANAG K S I F K L 0 1 1 1 0 0 2 1 0 1 0 1 0 2 1 1 0 0 1 0 0 0 13 1 1600.7522 P23284 P23284 117 129 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 2.684E-06 150.09 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 1.0199 1.0105 10.451 10 Median 0.97339 0.97278 13.134 3 0 Median 1.1485 1.0386 15.051 2 0 Median 0.96062 1.0209 3.2886 2 0 Median 1.1659 1.0321 5.9637 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 228000000 110760000 117230000 73611000 36410000 37201000 6963300 3183100 3780200 118280000 58680000 59597000 29147000 12491000 16656000 0 0 0 0 0 0 30439 2109 32000 158950;158951;158952;158953;158954;158955;158956;158957;158958;158959 159886;159887;159888;159889;159890;159891;159892;159893;159894;159895;159896;159897;159898;159899;159900;159901;159902;159903;159904;159905 159887 20 SIYIQSIGSLGNTR FFSDPYRKTPSPNKRSIYIQSIGSLGNTRI RSIYIQSIGSLGNTRIISEEYIKWLTGYCK R S I T R I 0 1 1 0 0 1 0 2 0 3 1 0 0 0 0 3 1 0 1 0 0 0 14 0 1507.7995 J3KSH1;J3KS38;J3KRS2;J3QLK6;J3KRD0;Q86W34;J3KTM1 J3KSH1 88 101 AMZ2 Archaemetzincin-2 yes no 2 6.2228E-06 124.1 By MS/MS 1 1.1161 1.2095 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1161 1.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5282500 2484800 2797700 0 0 0 0 0 0 5282500 2484800 2797700 0 0 0 0 0 0 0 0 0 30440 1326 32001 158960 159906 159906 1 SIYNLNEDEELTHYGQSLADIEK MKRFALEQQRHHEKKSIYNLNEDEELTHYG EELTHYGQSLADIEKHNDIVDSDSDAEDRG K S I E K H 1 0 2 2 0 1 4 1 1 2 3 1 0 0 0 2 1 0 2 0 0 0 23 0 2680.2504 P78316;E9PFK5 P78316 117 139 NOP14 Nucleolar protein 14 yes no 3 0.065427 6.1625 By matching By MS/MS 1 1 1.1244 1.1694 25.861 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92899 0.97397 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3609 1.404 NaN 1 0 Median NaN NaN NaN 0 0 Median 3848900 1964000 1884900 0 0 0 0 0 0 1562400 844890 717490 0 0 0 2286500 1119100 1167400 0 0 0 30441 2637 32002 158961;158962 159907 159907 1 SIYSLDKLYPESQGSDTAWR PRRALHKQKDGTEFKSIYSLDKLYPESQGS DKLYPESQGSDTAWRVPNGAKQADSDIPLD K S I W R V 1 1 0 2 0 1 1 1 0 1 2 1 0 0 1 4 1 1 2 0 0 0 20 1 2315.107 Q14197;J3KS15;J3QRF8 Q14197 41 60 ICT1 Peptidyl-tRNA hydrolase ICT1, mitochondrial yes no 3 1.4397E-10 89.049 By MS/MS By matching By matching 1 1 1 1.196 1.0658 11.48 3 Median 0.85986 0.89771 NaN 1 0 Median 1.196 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.204 1.0658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16856000 9656200 7199500 14484000 8323600 6160400 2257300 1280700 976600 0 0 0 114400 51916 62482 0 0 0 0 0 0 30442 1329 32003 158963;158964;158965 159908;159909 159908 2 SIYSLILGQDNAADQSR VSSASWYFLNVFGLRSIYSLILGQDNAADQ YSLILGQDNAADQSRMMQEQMTGAAMAMPA R S I S R M 2 1 1 2 0 2 0 1 0 2 2 0 0 0 0 3 0 0 1 0 0 0 17 0 1849.917 Q9P0I2 Q9P0I2 181 197 EMC3 ER membrane protein complex subunit 3 yes yes 2 0.001731 41.54 By MS/MS By matching By matching 2 1 1 1.26 1.1175 17.32 4 Median 1.0697 1.0235 2.1126 2 1 Median NaN NaN NaN 0 0 Median 1.5769 1.473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4833 1.2021 NaN 1 0 Median 6634200 3017400 3616800 4841000 2321800 2519200 0 0 0 1110200 438990 671210 0 0 0 0 0 0 682980 256580 426400 30443 4202 32004 158966;158967;158968;158969 159910;159911;159912 159912 3 SIYSQIQEQR YPHIKRIARHRHLPKSIYSQIQEQRIMKEA RHLPKSIYSQIQEQRIMKEARRRKEVNRIK K S I Q R I 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 0 10 0 1250.6255 A0A087WT20;Q9NV06 A0A087WT20 551 560 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 5.0124E-18 160.88 By MS/MS By MS/MS By matching 1 3 1 2.0918 2.4696 51.537 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1289 0.9797 NaN 1 0 Median 3.0401 3.0171 16.809 3 1 Plateau 1.5416 1.5898 NaN 1 0 Median 71582000 17438000 54144000 0 0 0 0 0 0 0 0 0 4444600 1789900 2654700 66728000 15485000 51242000 409870 163340 246530 30444 13 32005 158970;158971;158972;158973;158974 159913;159914 159913 2 SIYYITGESK TSLSEYVSRMKETQKSIYYITGESKEQVAN KETQKSIYYITGESKEQVANSAFVERVRKR K S I S K E 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 P08238;Q58FF8 P08238 482 491 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.00034968 105.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 3 3 2 4 1.2229 1.02 33.954 19 Median 1.0559 0.9409 47.784 4 1 Median 1.075 0.93215 25.035 4 0 Median 0.907 0.96585 11.056 3 0 Median 1.3241 1.195 17.742 3 0 Median 1.7229 1.7915 1.7933 2 0 Median 1.223 1.0059 20.994 3 0 Median 634330000 290910000 343420000 370690000 170130000 200560000 143850000 65621000 78225000 71162000 35197000 35965000 29815000 12386000 17429000 10912000 3744300 7167800 7906200 3827700 4078500 30445 1899;3040 32006 158975;158976;158977;158978;158979;158980;158981;158982;158983;158984;158985;158986;158987;158988;158989;158990;158991;158992;158993;158994 159915;159916;159917;159918;159919;159920;159921;159922;159923;159924;159925;159926;159927;159928;159929;159930;159931;159932;159933;159934;159935 159919 21 SIYYITGESKEQVANSAFVER TSLSEYVSRMKETQKSIYYITGESKEQVAN GESKEQVANSAFVERVRKRGFEVVYMTEPI K S I E R V 2 1 1 0 0 1 3 1 0 2 0 1 0 1 0 3 1 0 2 2 0 0 21 1 2390.1754 P08238 P08238 482 502 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2;3 6.0154E-26 126.22 By MS/MS 2 1.2665 1.3016 7.408 2 Median 1.2665 1.3016 7.408 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49806000 21477000 28329000 49806000 21477000 28329000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30446 1899 32007 158995;158996 159936;159937;159938;159939 159937 4 SKADCPTMEAQTTLTTNDIVISK DDEYADTDIPTTLIRSKADCPTMEAQTTLT EAQTTLTTNDIVISKLTQILSYLRQGTRNK R S K S K L 2 0 1 2 1 1 1 0 0 2 1 2 1 0 1 2 5 0 0 1 0 0 23 1 2523.2197 Q13123 Q13123 259 281 IK Protein Red yes yes 3 0.034201 12.682 By MS/MS 1 0.91131 1.021 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91131 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median 3391200 1866000 1525200 0 0 0 0 0 0 0 0 0 0 0 0 3391200 1866000 1525200 0 0 0 30447 2787 32008 158997 159940 159940 1 SKAEAESLYQSK IIAEVKAQYEDIAQKSKAEAESLYQSKYEE AQKSKAEAESLYQSKYEELQITAGRHGDSV K S K S K Y 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 3 0 0 1 0 0 0 12 1 1339.662 P04264;CON__P04264 P04264 365 376 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 6.2434E-39 181.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 20 5 18 7 5 0.033966 0.037808 154.98 35 Median 0.10639 0.10831 96.43 5 5 Median 0.043021 0.039832 186.62 10 10 Median 0.038372 0.038819 36.167 3 3 Median 0.011898 0.011334 111.04 11 11 Median 0.04407 0.046786 64.87 4 4 Median 0.014822 0.013218 46.186 2 2 Median 554730000 527510000 27221000 38788000 35959000 2828600 182760000 162740000 20024000 18827000 18036000 791510 139720000 138120000 1598900 108350000 106860000 1490200 66279000 65791000 488000 + 30448 1848 32009 158998;158999;159000;159001;159002;159003;159004;159005;159006;159007;159008;159009;159010;159011;159012;159013;159014;159015;159016;159017;159018;159019;159020;159021;159022;159023;159024;159025;159026;159027;159028;159029;159030;159031;159032;159033;159034;159035;159036;159037;159038;159039;159040;159041;159042;159043;159044;159045;159046;159047;159048;159049;159050;159051;159052;159053;159054;159055;159056;159057;159058;159059;159060 159941;159942;159943;159944;159945;159946;159947;159948;159949;159950;159951;159952;159953;159954;159955;159956;159957;159958;159959;159960;159961;159962;159963;159964;159965;159966;159967;159968;159969;159970;159971;159972;159973;159974;159975;159976;159977;159978;159979;159980;159981;159982;159983;159984;159985;159986;159987;159988;159989;159990;159991;159992;159993;159994;159995;159996;159997;159998;159999;160000;160001;160002;160003 159962 63 SKAEAESLYQSKYEELQITAGR IIAEVKAQYEDIAQKSKAEAESLYQSKYEE LYQSKYEELQITAGRHGDSVRNSKIEISEL K S K G R H 3 1 0 0 0 2 4 1 0 1 2 2 0 0 0 3 1 0 2 0 0 0 22 2 2500.2445 P04264;CON__P04264 P04264 365 386 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3;4 2.9277E-92 194.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 2 3 1 8 0.049491 0.058616 110.55 20 Median 0.12773 0.13502 124.96 9 9 Median 0.022545 0.025689 70.282 2 2 Median 0.055449 0.073582 32.174 2 2 Median 0.027314 0.02253 NaN 1 1 Median 0.040741 0.047044 90.171 6 6 Median NaN NaN NaN 0 0 Median 589560000 565130000 24432000 379400000 359050000 20342000 30651000 30207000 444670 33741000 33132000 609530 2420000 2394200 25753 143360000 140340000 3010300 0 0 0 + 30449 1848 32010 159061;159062;159063;159064;159065;159066;159067;159068;159069;159070;159071;159072;159073;159074;159075;159076;159077;159078;159079;159080;159081;159082;159083;159084 160004;160005;160006;160007;160008;160009;160010;160011;160012;160013;160014;160015;160016;160017;160018;160019;160020;160021;160022;160023;160024;160025;160026;160027 160005 24 SKAEEVVSFVK QLKIRKSNQIPTEVRSKAEEVVSFVKKNVL TEVRSKAEEVVSFVKKNVLVTGGFFGGFLL R S K V K K 1 0 0 0 0 0 2 0 0 0 0 2 0 1 0 2 0 0 0 3 0 0 11 1 1221.6605 Q9BWH2 Q9BWH2 160 170 FUNDC2 FUN14 domain-containing protein 2 yes yes 2 0.014541 72.434 By MS/MS 1 1.3244 1.1481 NaN 1 Median NaN NaN NaN 0 0 Median 1.3244 1.1481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3943000 1864800 2078200 0 0 0 3943000 1864800 2078200 0 0 0 0 0 0 0 0 0 0 0 0 30450 3872 32011 159085 160028 160028 1 SKAEEVVSFVKK QLKIRKSNQIPTEVRSKAEEVVSFVKKNVL EVRSKAEEVVSFVKKNVLVTGGFFGGFLLG R S K K K N 1 0 0 0 0 0 2 0 0 0 0 3 0 1 0 2 0 0 0 3 0 0 12 2 1349.7555 Q9BWH2 Q9BWH2 160 171 FUNDC2 FUN14 domain-containing protein 2 yes yes 3 0.001817 40.725 By MS/MS By MS/MS By matching 2 2 1 0.91577 0.91735 31.138 5 Median 0.67185 0.71849 45.58 2 0 Median 1.1644 0.98797 26.99 2 0 Median 0.82746 0.91735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11997000 5257500 6739700 5778700 2899200 2879500 5418700 1993700 3425100 799710 364590 435120 0 0 0 0 0 0 0 0 0 30451 3872 32012 159086;159087;159088;159089;159090 160029;160030;160031;160032;160033 160029 5 SKAEEWGVQYVETSAK SDLEERRQVPVEEARSKAEEWGVQYVETSA KAEEWGVQYVETSAKTRANVDKVFFDLMRE R S K A K T 2 0 0 0 0 1 3 1 0 0 0 2 0 0 0 2 1 1 1 2 0 0 16 1 1810.8737 P11234;C9J6B1 P11234 145 160 RALB Ras-related protein Ral-B yes no 2 3.1871E-11 118.37 By MS/MS 1 1.0311 1.0473 NaN 1 Median 1.0311 1.0473 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19315000 8798500 10517000 19315000 8798500 10517000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30452 1959 32013 159091 160034 160034 1 SKAELMEISEDK RLTTDFNVIVEALSKSKAELMEISEDKTKI LSKSKAELMEISEDKTKIRRSPSKPLPEVT K S K D K T 1 0 0 1 0 0 3 0 0 1 1 2 1 0 0 2 0 0 0 0 0 0 12 1 1378.665 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 75 86 SSB Lupus La protein yes no 2;3 0.0025685 75.695 By matching By MS/MS 1 2 1.135 1.0782 14.791 2 Median 1.2448 1.1971 NaN 1 0 Median 1.0349 0.97117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9277200 4190900 5086300 3881300 1828500 2052800 5395900 2362400 3033500 0 0 0 0 0 0 0 0 0 0 0 0 30453 1867 32014 159092;159093;159094 160035;160036;160037 160036 3 SKAELMEISEDKTK RLTTDFNVIVEALSKSKAELMEISEDKTKI KSKAELMEISEDKTKIRRSPSKPLPEVTDE K S K T K I 1 0 0 1 0 0 3 0 0 1 1 3 1 0 0 2 1 0 0 0 0 0 14 2 1607.8076 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 75 88 SSB Lupus La protein yes no 3;4 6.8495E-05 77.664 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1 1.042 1.1486 13.509 8 Median 1.042 1.0136 1.9077 2 0 Median 1.2703 1.2026 NaN 1 0 Median 0.98263 1.1526 0.62213 2 0 Median 1.0036 0.96464 24.823 2 0 Median 1.1069 1.2058 NaN 1 0 Median NaN NaN NaN 0 0 Median 117590000 55658000 61931000 64821000 31913000 32908000 14143000 6176200 7966600 10556000 5049000 5506900 17066000 7705200 9360400 11003000 4814400 6188600 0 0 0 30454 1867 32015 159095;159096;159097;159098;159099;159100;159101;159102 160038;160039;160040;160041;160042;160043;160044;160045;160046;160047;160048;160049 160048 12 SKDDQVTVIGAGVTLHEALAAAELLK NNEDFQVGQAKVVLKSKDDQVTVIGAGVTL GVTLHEALAAAELLKKEKINIRVLDPFTIK K S K L K K 5 0 0 2 0 1 2 2 1 1 4 2 0 0 0 1 2 0 0 3 0 0 26 1 2648.4385 P29401;A0A0B4J1R6 P29401 498 523 TKT Transketolase yes no 3 3.9261E-46 141.48 By MS/MS By MS/MS 1 2 0.94111 0.88817 39.494 3 Median 0.49423 0.46547 NaN 1 0 Median 0.98088 0.92001 4.9814 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25821000 11832000 13989000 7191200 2997500 4193700 18630000 8834400 9795600 0 0 0 0 0 0 0 0 0 0 0 0 30455 2173 32016 159103;159104;159105 160050;160051;160052;160053;160054 160053 5 SKDDQVTVIGAGVTLHEALAAAELLKK NNEDFQVGQAKVVLKSKDDQVTVIGAGVTL VTLHEALAAAELLKKEKINIRVLDPFTIKP K S K K K E 5 0 0 2 0 1 2 2 1 1 4 3 0 0 0 1 2 0 0 3 0 0 27 2 2776.5335 P29401;A0A0B4J1R6 P29401 498 524 TKT Transketolase yes no 3;4 1.0808E-19 66.886 By MS/MS By MS/MS 2 4 1.0855 1.0616 1.6824 6 Median 1.046 1.0674 2.4328 2 0 Median 1.1021 1.0616 1.655 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 181030000 84567000 96460000 167030000 78196000 88835000 13996000 6371100 7625100 0 0 0 0 0 0 0 0 0 0 0 0 30456 2173 32017 159106;159107;159108;159109;159110;159111 160055;160056;160057;160058 160058 4 SKDFVQVMR LCRVEGMTELYFQLKSKDFVQVMRHRDDER LYFQLKSKDFVQVMRHRDDERQKVCLDIIY K S K M R H 0 1 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 9 1 1108.5699 P78527 P78527 2417 2425 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0046732 86.833 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0969 1.0478 23.602 7 Median 0.9452 0.96779 13.738 2 0 Median 1.1149 1.0474 0.056273 2 0 Median 0.8541 0.99115 NaN 1 0 Median 1.5996 1.4899 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9055 1.6926 NaN 1 0 Median 48243000 23016000 25227000 8898800 4791900 4106900 16374000 7451500 8922100 16935000 8628800 8306600 4464900 1739600 2725200 0 0 0 1570300 404510 1165800 30457 2647 32018 159112;159113;159114;159115;159116;159117;159118 160059;160060;160061;160062 160062 3 SKDHFGLEGDEESTMLEDSVSPK QLIAGYIDIILKKKKSKDHFGLEGDEESTM GDEESTMLEDSVSPKKSTVLQQQYNRVGKV K S K P K K 0 0 0 3 0 0 4 2 1 0 2 2 1 1 1 4 1 0 0 1 0 0 23 1 2536.1275 Q9Y490 Q9Y490 405 427 TLN1 Talin-1 yes yes 3 1.3624E-11 53.747 By MS/MS By matching 1 1 0.81705 0.78373 3.4734 2 Median 0.78839 0.76472 NaN 1 0 Median 0.84676 0.80322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9715500 5511900 4203700 9254700 5265600 3989100 460800 246260 214550 0 0 0 0 0 0 0 0 0 0 0 0 30458 4441 32019 159119;159120 160063;160064 160063 2 SKDIFDQLAK SAEDIAKIKKFSKTRSKDIFDQLAKSLAPS FSKTRSKDIFDQLAKSLAPSIHGHDYVKKA R S K A K S 1 0 0 2 0 1 0 0 0 1 1 2 0 1 0 1 0 0 0 0 0 0 10 1 1163.6186 P25205;J3KQ69;A0A499FHX9 P25205 292 301 MCM3 DNA replication licensing factor MCM3 yes no 2 0.011365 66.568 By MS/MS By MS/MS 2 1 1.0835 1.1052 62.433 3 Median NaN NaN NaN 0 0 Median 1.968 1.8242 78.239 2 0 Median 0.96913 1.1052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32745000 15090000 17655000 0 0 0 11238000 3248700 7989500 21507000 11841000 9665600 0 0 0 0 0 0 0 0 0 30459 2129 32020 159121;159122;159123 160065;160066 160066 2 SKDKLDQVSSEIK EELAKHGMKVVLISRSKDKLDQVSSEIKEK SRSKDKLDQVSSEIKEKFKVETRTIAVDFA R S K I K E 0 0 0 2 0 1 1 0 0 1 1 3 0 0 0 3 0 0 0 1 0 0 13 2 1475.7831 Q53GQ0;A0A1B0GVY6 Q53GQ0 83 95 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 3 1.268E-07 109.44 By MS/MS By MS/MS By matching 1 2 1 1.1366 1.1578 14.003 4 Median 1.047 1.0937 NaN 1 0 Median 1.3193 1.3006 8.3984 2 0 Median 0.96824 0.99935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13824000 6616900 7207500 2758400 1326500 1431900 9987600 4767000 5220600 1078300 523400 554950 0 0 0 0 0 0 0 0 0 30460 3030 32021 159124;159125;159126;159127 160067;160068;160069 160069 3 SKDPNSQVGACIVNSENK WPEYFMAVAFLSAQRSKDPNSQVGACIVNS PNSQVGACIVNSENKIVGIGYNGMPNGCSD R S K N K I 1 0 3 1 1 1 1 1 0 1 0 2 0 0 1 3 0 0 0 2 0 0 18 1 1945.9164 P32321;D6RBJ9;D6RAD7;D6RAR9;D6RC36;D6R9S0;D6RBN2 P32321 30 47 DCTD Deoxycytidylate deaminase yes no 3 0.0013586 28.083 By MS/MS 1 1.0409 0.92019 NaN 1 Median NaN NaN NaN 0 0 Median 1.0409 0.92019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1183000 478410 704550 0 0 0 1183000 478410 704550 0 0 0 0 0 0 0 0 0 0 0 0 30461 2217 32022 159128 160070 160070 1 SKDQDDQKPGPSER RKDDAKKGDDGSGEKSKDQDDQKPGPSERS KSKDQDDQKPGPSERSRATKSGSRGTERTV K S K E R S 0 1 0 3 0 2 1 1 0 0 0 2 0 0 2 2 0 0 0 0 0 0 14 2 1585.7332 Q15424 Q15424 536 549 SAFB Scaffold attachment factor B1 yes yes 3 0.00047622 48.527 By matching By matching By MS/MS By matching 1 2 2 1 0.63908 0.73487 14.464 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5139 0.58558 NaN 1 0 Median 0.70057 0.77322 17.945 2 0 Median 0.62435 0.73487 3.8865 2 0 Median 0.80674 0.82768 NaN 1 0 Median 5027300 2981300 2046100 0 0 0 0 0 0 149110 94220 54892 571470 312940 258530 4212100 2526100 1686000 94673 47981 46692 30462 2951 32023 159129;159130;159131;159132;159133;159134 160071 160071 1 SKDTVSEDTIR SLRKVRTNSMNKLKKSKDTVSEDTIRLIEK KLKKSKDTVSEDTIRLIEKQISQMADDTVA K S K I R L 0 1 0 2 0 0 1 0 0 1 0 1 0 0 0 2 2 0 0 1 0 0 11 1 1249.615 Q96E11 Q96E11 222 232 MRRF Ribosome-recycling factor, mitochondrial yes yes 2;3 0.025064 62.303 By matching By MS/MS By MS/MS 2 2 1 1.0836 1.112 22.451 5 Median 1.2009 1.241 35.317 2 0 Median NaN NaN NaN 0 0 Median 0.96634 0.99196 16.16 2 1 Median 1.2883 1.1404 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5466800 2548000 2918800 1117400 601550 515830 0 0 0 3503800 1563800 1940000 845600 382610 463000 0 0 0 0 0 0 30463 3631 32024 159135;159136;159137;159138;159139 160072;160073;160074 160074 3 SKDYEFMWNPHLGYILTCPSNLGTGLR TRFCTGLTQIETLFKSKDYEFMWNPHLGYI GYILTCPSNLGTGLRAGVHIKLPNLGKHEK K S K L R A 0 1 2 1 1 0 1 3 1 1 4 1 1 1 2 2 2 1 2 0 0 0 27 1 3168.5161 P12277;H0YJG0;H0YJK0 P12277 266 292 CKB Creatine kinase B-type yes no 3;4 2.265E-13 54.141 By MS/MS 2 0.82762 0.77405 4.8888 2 Median NaN NaN NaN 0 0 Median 0.82762 0.77405 4.8888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4432300 2325500 2106800 0 0 0 4432300 2325500 2106800 0 0 0 0 0 0 0 0 0 0 0 0 30464 1980 32025 159140;159141 160075;160076;160077;160078 160075 4 SKEEAEALYHSK IIAEVKAQYEEIAQRSKEEAEALYHSKYEE AQRSKEEAEALYHSKYEELQVTVGRHGDSL R S K S K Y 2 0 0 0 0 0 3 0 1 0 1 2 0 0 0 2 0 0 1 0 0 0 12 1 1390.6729 CON__P35908;CON__P35908v2;P35908 CON__P35908 369 380 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 2.7208E-11 142.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 13 8 2 1 0.015297 0.01402 143.61 22 Median 0.062895 0.062145 223.84 2 2 Median 0.024273 0.022478 132.4 9 9 Median NaN NaN NaN 0 0 Median 0.008108 0.0077818 89.643 8 8 Median 0.074263 0.079707 317.36 2 2 Median 0.040239 0.036402 NaN 1 1 Median 193820000 184390000 9426300 10447000 9222400 1225000 83597000 79779000 3818900 0 0 0 55752000 54923000 829360 42984000 39483000 3501500 1036600 985040 51537 + 30465 764;765 32026 159142;159143;159144;159145;159146;159147;159148;159149;159150;159151;159152;159153;159154;159155;159156;159157;159158;159159;159160;159161;159162;159163;159164;159165;159166;159167 160079;160080;160081;160082;160083;160084;160085;160086;160087;160088;160089;160090;160091;160092;160093;160094;160095;160096;160097;160098;160099;160100;160101;160102;160103;160104 160086 26 SKEEAEALYHSKYEELQVTVGR IIAEVKAQYEEIAQRSKEEAEALYHSKYEE LYHSKYEELQVTVGRHGDSLKEIKIEISEL R S K G R H 2 1 0 0 0 1 5 1 1 0 2 2 0 0 0 2 1 0 2 2 0 0 22 2 2565.2711 CON__P35908;CON__P35908v2;P35908 CON__P35908 369 390 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 5.7365E-33 127.35 By MS/MS By MS/MS By MS/MS By MS/MS 5 1 2 2 0.0771 0.087854 78.785 9 Median 0.08699 0.094667 70.54 5 5 Median 0.065401 0.074522 NaN 1 1 Median 0.12141 0.13835 64.218 2 2 Median NaN NaN NaN 0 0 Median 0.019308 0.022243 NaN 1 1 Median NaN NaN NaN 0 0 Median 244270000 218210000 26054000 168590000 145620000 22978000 7261600 6871400 390220 18254000 16904000 1349600 0 0 0 50159000 48824000 1335300 0 0 0 + 30466 764;765 32027 159168;159169;159170;159171;159172;159173;159174;159175;159176;159177 160105;160106;160107;160108;160109;160110;160111;160112;160113;160114;160115 160106 11 SKEEESVHVTQR QKLISQLMDCCVDIKSKEEESVHVTQRKTH DIKSKEEESVHVTQRKTHYSMDSLSSWYMT K S K Q R K 0 1 0 0 0 1 3 0 1 0 0 1 0 0 0 2 1 0 0 2 0 0 12 1 1427.7005 Q9UBD5 Q9UBD5 164 175 ORC3 Origin recognition complex subunit 3 yes yes 3 0.060509 14.687 By MS/MS By matching 1 1 1.2075 1.2299 11.805 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2568 1.337 NaN 1 0 Median 1.1601 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1497400 823590 673770 0 0 0 0 0 0 1338000 754470 583490 159410 69122 90284 0 0 0 0 0 0 30467 4236 32028 159178;159179 160116 160116 1 SKEEQEKVEADMIQQR VPLMKNGAVQTIAQRSKEEQEKVEADMIQQ KEEQEKVEADMIQQREEWDRKKKMKVKRER R S K Q R E 1 1 0 1 0 3 4 0 0 1 0 2 1 0 0 1 0 0 0 1 0 0 16 2 1946.9368 P82675 P82675 161 176 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 3;4 0.0071016 25.59 By MS/MS By matching By MS/MS 1 1 1 0.61458 0.65069 33.875 3 Median 0.61458 0.65069 NaN 1 0 Median 0.35303 0.42199 NaN 1 0 Median 0.73391 0.8228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6593900 4035400 2558600 1496900 890720 606140 2229200 1637700 591560 2867800 1507000 1360900 0 0 0 0 0 0 0 0 0 30468 2653 32029 159180;159181;159182 160117;160118 160118 2 SKEEYQQTWYHEGPNSLK DALKKTKKDDEKSKKSKEEYQQTWYHEGPN EYQQTWYHEGPNSLKVARLWIANYSLPRAM K S K L K V 0 0 1 0 0 2 3 1 1 0 1 2 0 0 1 2 1 1 2 0 0 0 18 1 2223.0233 O43172 O43172 158 175 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 2.927E-06 56.121 By MS/MS By MS/MS 2 1 0.81471 0.85114 18.817 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77549 0.81026 6.9601 2 2 Median 1.1103 1.1098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24805000 12854000 11951000 0 0 0 0 0 0 18662000 10033000 8629000 6142600 2820900 3321700 0 0 0 0 0 0 30469 1557 32030 159183;159184;159185 160119;160120;160121;160122 160122 4 SKEFAQIIK LLPGLQKLHDALDAKSKEFAQIIKIGRTHT DALDAKSKEFAQIIKIGRTHTQDAVPLTLG K S K I K I 1 0 0 0 0 1 1 0 0 2 0 2 0 1 0 1 0 0 0 0 0 0 9 1 1062.6073 P07954 P07954 222 230 FH Fumarate hydratase, mitochondrial yes yes 2 0.035433 51.346 By MS/MS By matching 1 1 1.1466 1.205 18.549 2 Median 1.1002 1.0569 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1949 1.3739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7508300 3558400 3950000 4654400 2356200 2298200 0 0 0 2853900 1202100 1651700 0 0 0 0 0 0 0 0 0 30470 1896 32031 159186;159187 160123 160123 1 SKEGDVEEPTDDSLPTTGDAGGR GTSSKQVVKQGLQERSKEGDVEEPTDDSLP PTDDSLPTTGDAGGREPMEEKLLEIQGKIE R S K G R E 1 1 0 4 0 0 3 4 0 0 1 1 0 0 2 2 3 0 0 1 0 0 23 1 2332.0303 Q9UKN8 Q9UKN8 640 662 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3 1.2233E-08 50.055 By MS/MS By matching 1 1 0.89201 0.92607 40.134 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61412 0.69726 NaN 1 0 Median 1.2956 1.23 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6406300 2873100 3533200 0 0 0 0 0 0 4658100 2196400 2461700 1748200 676690 1071500 0 0 0 0 0 0 30471 4314 32032 159188;159189 160124 160124 1 SKEGDVEEPTDDSLPTTGDAGGREPMEEK GTSSKQVVKQGLQERSKEGDVEEPTDDSLP PTTGDAGGREPMEEKLLEIQGKIEAVEMHL R S K E K L 1 1 0 4 0 0 6 4 0 0 1 2 1 0 3 2 3 0 0 1 0 0 29 2 3075.3462 Q9UKN8 Q9UKN8 640 668 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 4 1.2869E-14 60.481 By MS/MS 1 0.55556 0.6921 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55556 0.6921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14875000 8924200 5951100 0 0 0 0 0 0 14875000 8924200 5951100 0 0 0 0 0 0 0 0 0 30472 4314 32033 159190 160125;160126 160126 2 SKEISQFLNR SAQTIQQLEDQLQQKSKEISQFLNRLPLQQ QLQQKSKEISQFLNRLPLQQHETASQTSFP K S K N R L 0 1 1 0 0 1 1 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 10 1 1220.6513 Q14789;E7EU81;H0Y867 Q14789 431 440 GOLGB1 Golgin subfamily B member 1 yes no 3 0.00035095 88.056 By MS/MS By MS/MS 1 2 1.411 1.3915 7.7864 2 Median 1.2793 1.317 NaN 1 0 Median 1.5563 1.4703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7929000 2857700 5071300 4777100 2067400 2709600 3152000 790250 2361700 0 0 0 0 0 0 0 0 0 0 0 0 30473 2900 32034 159191;159192;159193 160127;160128;160129 160129 3 SKELTTEIDNNIEQISSYK AEQNRKDAEAWFNEKSKELTTEIDNNIEQI TTEIDNNIEQISSYKSEITELRRNVQALEI K S K Y K S 0 0 2 1 0 1 3 0 0 3 1 2 0 0 0 3 2 0 1 0 0 0 19 1 2211.0907 P13645;CON__P13645 P13645 344 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 8.262E-124 233.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 4 17 6 10 0.062992 0.065873 102.22 37 Median 0.05777 0.054873 97.47 7 6 Median 0.071865 0.068572 89.183 4 3 Median 0.054441 0.056649 106.01 12 11 Median 0.026575 0.024335 71.874 6 6 Median 0.08396 0.09064 93.061 8 7 Median NaN NaN NaN 0 0 Median 893620000 835470000 58152000 307580000 299840000 7739300 37775000 34730000 3045400 212270000 195140000 17126000 46460000 45312000 1148200 289540000 260440000 29093000 0 0 0 + 30474 756 32035 159194;159195;159196;159197;159198;159199;159200;159201;159202;159203;159204;159205;159206;159207;159208;159209;159210;159211;159212;159213;159214;159215;159216;159217;159218;159219;159220;159221;159222;159223;159224;159225;159226;159227;159228;159229;159230;159231;159232;159233;159234;159235;159236;159237;159238;159239;159240;159241 160130;160131;160132;160133;160134;160135;160136;160137;160138;160139;160140;160141;160142;160143;160144;160145;160146;160147;160148;160149;160150;160151;160152;160153;160154;160155;160156;160157;160158;160159;160160;160161;160162;160163;160164;160165;160166;160167;160168;160169;160170;160171;160172;160173;160174;160175;160176;160177;160178 160133 49 SKENISLLEK DKDQKIQNLEALLQKSKENISLLEKEREDL ALLQKSKENISLLEKEREDLYAKIQAGEGE K S K E K E 0 0 1 0 0 0 2 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 10 1 1159.6449 Q15075 Q15075 535 544 EEA1 Early endosome antigen 1 yes yes 2 0.0034326 102.06 By MS/MS 1 0.98179 0.94955 NaN 1 Median NaN NaN NaN 0 0 Median 0.98179 0.94955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3035600 1547500 1488100 0 0 0 3035600 1547500 1488100 0 0 0 0 0 0 0 0 0 0 0 0 30475 2926 32036 159242 160179 160179 1 SKEQAELEAAR LELGRIRSNAEDTLRSKEQAELEAARQRQL DTLRSKEQAELEAARQRQLAAEEERRRREA R S K A R Q 3 1 0 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1230.6204 Q15149 Q15149 2098 2108 PLEC Plectin yes yes 2;3 0.00065468 88.496 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 2 2 1.2461 1.1822 16.695 13 Median 1.1062 1.1255 3.776 2 0 Median 1.543 1.4952 8.0856 3 3 Median 1.0263 1.1814 4.3239 2 1 Median 1.1895 1.108 9.1639 2 0 Median 1.4136 1.6003 9.8781 2 0 Median 1.1986 1.0647 5.4966 2 0 Median 17876000 7849900 10027000 2973800 1426700 1547100 8806900 3801600 5005300 678420 330980 347440 597970 239800 358170 2232800 831110 1401600 2586600 1219600 1367000 30476 2933 32037 159243;159244;159245;159246;159247;159248;159249;159250;159251;159252;159253;159254;159255 160180;160181;160182;160183;160184;160185;160186;160187;160188 160182 9 SKEQEVNELLQK SQVKREKENIQTLLKSKEQEVNELLQKFQQ LLKSKEQEVNELLQKFQQAQEELAEMKRYA K S K Q K F 0 0 1 0 0 2 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 12 1 1443.7569 Q9P0K7 Q9P0K7 844 855 RAI14 Ankycorbin yes yes 2;3 1.6126E-05 132.17 By matching By MS/MS By MS/MS 1 1 2 1.046 1.1423 41.392 4 Linear NaN NaN NaN 0 0 Median 0.51225 0.48103 NaN 1 0 Median 0.95592 1.0967 NaN 1 0 Median 1.1573 1.1025 1.5623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15366000 7779800 7586000 0 0 0 1118300 637830 480480 4837700 2625300 2212400 9409800 4516700 4893100 0 0 0 0 0 0 30477 4204 32038 159256;159257;159258;159259 160189;160190;160191;160192;160193 160190 5 SKESVPEFPLSPPK KRASGQAFELILSPRSKESVPEFPLSPPKK RSKESVPEFPLSPPKKKDLSLEEIQKKLEA R S K P K K 0 0 0 0 0 0 2 0 0 0 1 2 0 1 4 3 0 0 0 1 0 0 14 1 1540.8137 A2A2D0;P16949 A2A2D0 28 41 STMN1 Stathmin yes no 2;3 2.5361E-07 142.08 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.62324 0.56006 15.596 7 Median 0.47299 0.46933 0.58127 2 0 Median 0.69713 0.61648 2.341 2 0 Median 0.54654 0.55492 26.25 2 1 Median 0.62324 0.56006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137720000 89718000 48006000 113270000 74600000 38672000 9923100 5827400 4095700 14162000 9060700 5101700 366810 230200 136610 0 0 0 0 0 0 30478 496 32039 159260;159261;159262;159263;159264;159265;159266 160194;160195;160196;160197;160198;160199;160200;160201;160202;160203;160204;160205;160206;160207;160208 160197 15 SKEYFSK GWKPGSDTIKPDVQKSKEYFSKQK______ TIKPDVQKSKEYFSKQK_____________ K S K S K Q 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 2 0 0 1 0 0 0 7 1 887.43888 Q06830;A0A0A0MRQ5 Q06830 191 197 PRDX1 Peroxiredoxin-1 yes no 2 0.046429 83.313 By MS/MS By matching By matching 1 2 1 1.2769 1.2333 16.791 4 Median 1.3458 1.3698 NaN 1 0 Median 1.2086 1.0908 2.5281 2 0 Median 1.4884 1.521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6734500 2804200 3930300 4661900 1922000 2739900 1421100 622830 798250 651550 259350 392200 0 0 0 0 0 0 0 0 0 30479 2728 32040 159267;159268;159269;159270 160209 160209 1 SKFADLSEAANR SVAAKNLQEAEEWYKSKFADLSEAANRNND WYKSKFADLSEAANRNNDALRQAKQESTEY K S K N R N 3 1 1 1 0 0 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 12 1 1307.647 P08670;B0YJC4;B0YJC5 P08670 293 304 VIM Vimentin yes no 3 0.030832 33.782 By MS/MS 1 0.87005 0.90448 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87005 0.90448 NaN 1 1 Median NaN NaN NaN 0 0 Median 2956500 1350100 1606400 0 0 0 0 0 0 0 0 0 0 0 0 2956500 1350100 1606400 0 0 0 30480 1907 32041 159271 160210 160210 1 SKFDNLYGCR ILKVPAINVNDSVTKSKFDNLYGCRESLID DSVTKSKFDNLYGCRESLIDGIKRATDVMI K S K C R E 0 1 1 1 1 0 0 1 0 0 1 1 0 1 0 1 0 0 1 0 0 0 10 1 1258.5765 P23526 P23526 187 196 AHCY Adenosylhomocysteinase yes yes 3 0.011828 32.008 By matching By MS/MS 1 2 1.0787 0.98598 37.717 3 Median 0.88065 0.8955 NaN 1 0 Median 1.4407 1.3308 42.413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3888000 1614700 2273300 951960 336820 615140 2936000 1277800 1658200 0 0 0 0 0 0 0 0 0 0 0 0 30481 2116 32042 159272;159273;159274 160211 160211 1 SKFEDMAK KKCSERWKTMSAKEKSKFEDMAKSDKARYD TMSAKEKSKFEDMAKSDKARYDREMKNYVP K S K A K S 1 0 0 1 0 0 1 0 0 0 0 2 1 1 0 1 0 0 0 0 0 0 8 1 954.44807 P26583;D6R9A6 P26583 58 65 HMGB2 High mobility group protein B2 yes no 2 0.016488 93.374 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 3 3 1 2 1.2193 1.0866 15.436 12 Median 1.2851 1.2761 43.298 2 0 Median 1.2317 1.1293 NaN 1 0 Median 1.0288 1.0192 5.627 3 0 Median 1.2606 1.088 2.5113 3 0 Median 0.98167 1.0399 NaN 1 0 Median 1.316 1.1326 4.9161 2 0 Median 129550000 60732000 68821000 6985700 3381000 3604700 1061000 486800 574190 101220000 47950000 53267000 15231000 6609300 8621200 1917100 969680 947400 3140200 1334300 1805800 30482 2146 32043 159275;159276;159277;159278;159279;159280;159281;159282;159283;159284;159285;159286 160212;160213;160214;160215;160216 160216 5 SKFENEEFFR ______________________________ VPDQRSKFENEEFFRKLSRECEIKYTGFRD R S K F R K 0 1 1 0 0 0 3 0 0 0 0 1 0 3 0 1 0 0 0 0 0 0 10 1 1331.6146 Q13951;A0A494C0A9;H3BSC0;J3KRT0 Q13951 10 19 CBFB Core-binding factor subunit beta yes no 2;3 0.00088851 113.62 By MS/MS By MS/MS By matching 2 2 1 1.1507 1.0844 19.628 5 Median 0.94076 0.98263 28.695 2 1 Median 1.194 1.1122 3.5849 2 1 Median 0.71813 0.80404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35933000 20488000 15445000 27659000 16622000 11037000 6246400 2774400 3472000 2028400 1091600 936810 0 0 0 0 0 0 0 0 0 30483 2848 32044 159287;159288;159289;159290;159291 160217;160218;160219 160217 3 SKGAHTTMADALWR LSKEQESRLPSHWLKSKGAHTTMADALWRL KSKGAHTTMADALWRLRDLMLRDTLNIRQA K S K W R L 3 1 0 1 0 0 0 1 1 0 1 1 1 0 0 1 2 1 0 0 0 0 14 1 1543.7565 Q86U86 Q86U86 1655 1668 PBRM1 Protein polybromo-1 yes yes 3 0.0002973 55.213 By MS/MS 1 0.84009 1.0063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84009 1.0063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4406700 2247200 2159500 0 0 0 0 0 0 4406700 2247200 2159500 0 0 0 0 0 0 0 0 0 30484 3273 32045 159292 160220 160220 1 SKGAVAIADAIR LRQVEVINFGDCLVRSKGAVAIADAIRGGL LVRSKGAVAIADAIRGGLPKLKELNLSFCE R S K I R G 4 1 0 1 0 0 0 1 0 2 0 1 0 0 0 1 0 0 0 1 0 0 12 1 1170.6721 P46060;H0Y4Q3 P46060 278 289 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.0072412 51.841 By MS/MS 1 1.1874 1.2177 NaN 1 Median 1.1874 1.2177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4729000 2165700 2563300 4729000 2165700 2563300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30485 2336 32046 159293 160221 160221 1 SKGEPVISVK KSGSRGMERTVVMDKSKGEPVISVKTTSRS VVMDKSKGEPVISVKTTSRSKERSSKSQDR K S K V K T 0 0 0 0 0 0 1 1 0 1 0 2 0 0 1 2 0 0 0 2 0 0 10 1 1042.6023 Q14151 Q14151 577 586 SAFB2 Scaffold attachment factor B2 yes yes 2 0.066257 39.305 By matching By matching By matching By MS/MS 1 1 2 2 0.84754 0.83209 5.9576 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82252 0.93705 NaN 1 0 Median 0.87332 0.8319 NaN 1 0 Median 0.73518 0.80058 3.0815 2 0 Median 0.92642 0.83243 0.027672 2 0 Median 7198400 3921100 3277300 0 0 0 0 0 0 806150 447590 358550 671730 368350 303380 4172100 2329900 1842100 1548500 775220 773240 30486 2859 32047 159294;159295;159296;159297;159298;159299 160222 160222 1 SKGFGFVSFER GPALSVKVMTDESGKSKGFGFVSFERHEDA ESGKSKGFGFVSFERHEDAQKAVDEMNGKE K S K E R H 0 1 0 0 0 0 1 2 0 0 0 1 0 3 0 2 0 0 0 1 0 0 11 1 1259.6299 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YAR2;H0YAP2 P11940 230 240 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 3 0.011111 29.807 By MS/MS 1 1.1383 1.1617 NaN 1 Median 1.1383 1.1617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1750400 651180 1099200 1750400 651180 1099200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30487 1973 32048 159300 160223 160223 1 SKGHYEVTGSDDETGKLQGSGVSLASK HGKLKFGTFGGLGSKSKGHYEVTGSDDETG ETGKLQGSGVSLASKKSRLSSSSSNDSGNK K S K S K K 1 0 0 2 0 1 2 5 1 0 2 3 0 0 0 5 2 0 1 2 0 0 27 2 2736.3202 Q09666 Q09666 5832 5858 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 4 3.769E-05 30.786 By MS/MS By MS/MS 1 1 1.124 1.3612 29.854 2 Median 1.4232 1.6811 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8877 1.1021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9567900 4625500 4942400 5091400 2313400 2778000 0 0 0 4476500 2312100 2164400 0 0 0 0 0 0 0 0 0 30488 2749 32049 159301;159302 160224;160225 160225 2 SKGIAYIEFK FEDAAEIRLVSKDGKSKGIAYIEFKTEADA SKDGKSKGIAYIEFKTEADAEKTFEEKQGT K S K F K T 1 0 0 0 0 0 1 1 0 2 0 2 0 1 0 1 0 0 1 0 0 0 10 1 1154.6336 P19338;H7BY16 P19338 428 437 NCL Nucleolin yes no 2 0.032849 60.518 By MS/MS 1 1.0809 1.1322 NaN 1 Median 1.0809 1.1322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11269000 5307300 5961600 11269000 5307300 5961600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30489 2063 32050 159303 160226 160226 1 SKGIYQSLEGAVQAGQLK FKEMELPAKEADKNRSKGIYQSLEGAVQAG IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG R S K L K V 2 0 0 0 0 3 1 3 0 1 2 2 0 0 0 2 0 0 1 1 0 0 18 1 1876.0054 Q15149;H0YDN1;E9PMV1 Q15149 476 493 PLEC Plectin yes no 2 4.4526E-12 145.71 By MS/MS 1 1.2131 1.322 NaN 1 Median 1.2131 1.322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8238100 3565500 4672600 8238100 3565500 4672600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30490 2933 32051 159304 160227;160228 160227 2 SKGLAPDLPEDLYHLIKK QVRFVTGNKILRILKSKGLAPDLPEDLYHL LAPDLPEDLYHLIKKAVAVRKHLERNRKDK K S K K K A 1 0 0 2 0 0 1 1 1 1 4 3 0 0 2 1 0 0 1 0 0 0 18 2 2036.1306 P62277;J3KMX5 P62277 77 94 RPS13 40S ribosomal protein S13 yes no 4 0.0083283 23.726 By MS/MS 1 1.0027 1.1333 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0027 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median 6734100 3616100 3118000 0 0 0 0 0 0 0 0 0 0 0 0 6734100 3616100 3118000 0 0 0 30491 2580 32052 159305 160229 160229 1 SKGPSAAGEQEPDKESGASVDEVAR TAEEAAKKKRRKKKKSKGPSAAGEQEPDKE EPDKESGASVDEVARQLERSALEDKERDED K S K A R Q 4 1 0 2 0 1 4 3 0 0 0 2 0 0 2 4 0 0 0 2 0 0 25 2 2500.1678 P50579;G3V1U3;F8VSC4 P50579 45 69 METAP2 Methionine aminopeptidase 2 yes no 4 0.026865 13.248 By MS/MS By MS/MS 1 1 0.73212 0.76458 38.236 2 Median NaN NaN NaN 0 0 Median 0.97779 1.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54817 0.58345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3522500 2018500 1504000 0 0 0 1488200 712400 775770 0 0 0 2034300 1306100 728180 0 0 0 0 0 0 30492 2418 32053 159306;159307 160230;160231;160232 160231 3 SKGYAFIEFASFEDAK EKATFIKVPQNQNGKSKGYAFIEFASFEDA KGYAFIEFASFEDAKEALNSCNKREIEGRA K S K A K E 3 0 0 1 0 0 2 1 0 1 0 2 0 3 0 2 0 0 1 0 0 0 16 1 1808.8621 P19338;H7BY16 P19338 522 537 NCL Nucleolin yes no 3 0.067238 10.057 By MS/MS By matching 2 1 0.84981 0.90063 21.823 3 Median 0.71284 0.74819 26.225 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85386 0.91319 NaN 1 0 Median NaN NaN NaN 0 0 Median 2198500 1100900 1097500 1751500 900210 851340 0 0 0 0 0 0 0 0 0 446920 200740 246180 0 0 0 30493 2063 32054 159308;159309;159310 160233 160233 1 SKHEEIDLVSLEEFYK VMHLQKEITKCLEFKSKHEEIDLVSLEEFY KHEEIDLVSLEEFYKEAPPDISKAEVTMGD K S K Y K E 0 0 0 1 0 0 4 0 1 1 2 2 0 1 0 2 0 0 1 1 0 0 16 1 1964.9731 Q13769;F8WCP5;C9JXG5;H7C072;H7C441 Q13769 152 167 THOC5 THO complex subunit 5 homolog yes no 3 0.016767 21.841 By MS/MS 1 0.7799 0.88013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7799 0.88013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4081600 2174200 1907400 0 0 0 0 0 0 4081600 2174200 1907400 0 0 0 0 0 0 0 0 0 30494 2837 32055 159311 160234 160234 1 SKIEDYFPEFAR LNKQDLLAEKVLAGKSKIEDYFPEFARYTT AGKSKIEDYFPEFARYTTPEDATPEPGEDP K S K A R Y 1 1 0 1 0 0 2 0 0 1 0 1 0 2 1 1 0 0 1 0 0 0 12 1 1500.7249 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A0A0MR13 Q5JWF2 949 960 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 3 0.05856 15.031 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1.1754 1.159 22.523 6 Median 0.85507 0.91393 NaN 1 0 Median 1.4518 1.3558 NaN 1 0 Median 1.3417 1.4386 6.6584 2 0 Median 1.04 0.92616 NaN 1 0 Median 0.95824 0.99072 NaN 1 0 Median NaN NaN NaN 0 0 Median 4623800 1869800 2754000 893570 350770 542800 301950 112320 189620 2815100 1122500 1692600 91795 39977 51818 521430 244220 277210 0 0 0 30495 2616 32056 159312;159313;159314;159315;159316;159317 160235 160235 1 SKIETEIK KATRKRVRDALTAEKSKIETEIKNKMQQKS DALTAEKSKIETEIKNKMQQKSQKKAELLD K S K I K N 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 1 1 0 0 0 0 0 8 1 946.53351 Q9HB71;B2ZWH1 Q9HB71 34 41 CACYBP Calcyclin-binding protein yes no 2 0.064356 52.716 By matching By MS/MS By matching By matching 2 2 2 1 1.1796 1.1427 43.831 7 Median 1.1369 1.1292 1.6747 2 0 Median 0.66073 0.62493 73.392 2 0 Median 1.2078 1.2747 5.6465 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3356 1.1591 NaN 1 0 Median 11215000 5242600 5972000 3543500 1579700 1963800 2157100 1178800 978310 4881500 2238000 2643400 0 0 0 0 0 0 632490 246030 386460 30496 4016 32057 159318;159319;159320;159321;159322;159323;159324 160236 160236 1 SKINVNEIFYDLVR ARQWNNCAFLESSAKSKINVNEIFYDLVRQ KSKINVNEIFYDLVRQINRKTPVPGKARKK K S K V R Q 0 1 2 1 0 0 1 0 0 2 1 1 0 1 0 1 0 0 1 2 0 0 14 1 1708.9148 P61224;P62834;A6NIZ1;F5GZG1;B7ZB78;F5H823 P61224 150 163 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 0.00088561 80.979 By MS/MS By MS/MS 2 1 0.97925 1.0267 6.6908 3 Plateau 0.97162 0.99093 5.0151 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97016 1.0933 NaN 1 0 Median NaN NaN NaN 0 0 Median 13521000 6707700 6812900 9098500 4510300 4588200 0 0 0 0 0 0 0 0 0 4422100 2197300 2224700 0 0 0 30497 2551 32058 159325;159326;159327 160237;160238;160239 160238 2 SKITVTSEVPFSK AGNLGGGVVTIERSKSKITVTSEVPFSKRY SKSKITVTSEVPFSKRYLKYLTKKYLKKNN K S K S K R 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 3 2 0 0 2 0 0 13 1 1421.7766 K7EMH1;K7ERI7;P35268;K7ELC4;K7EP65;K7EKS7;K7EJT5 K7EMH1 35 47 RPL22 60S ribosomal protein L22 yes no 2;3 1.4306E-09 176.87 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 1 1.0301 0.9353 15.438 12 Median 0.95362 0.95115 9.2182 3 0 Plateau 1.0423 0.91269 7.2183 4 0 Median 1.0863 1.097 10.469 2 0 Median 1.0841 0.90925 6.9975 2 0 Median 1.3508 1.4316 NaN 1 0 Median NaN NaN NaN 0 0 Median 218370000 108740000 109630000 101460000 52998000 48457000 83010000 40080000 42930000 30122000 13888000 16234000 2120800 1021600 1099200 1665300 752640 912640 0 0 0 30498 1382 32059 159328;159329;159330;159331;159332;159333;159334;159335;159336;159337;159338;159339 160240;160241;160242;160243;160244;160245;160246;160247;160248;160249;160250;160251;160252;160253;160254;160255 160251 16 SKITVTSEVPFSKR AGNLGGGVVTIERSKSKITVTSEVPFSKRY KSKITVTSEVPFSKRYLKYLTKKYLKKNNL K S K K R Y 0 1 0 0 0 0 1 0 0 1 0 2 0 1 1 3 2 0 0 2 0 0 14 2 1577.8777 K7EMH1;K7ERI7;P35268;K7ELC4;K7EP65;K7EKS7 K7EMH1 35 48 RPL22 60S ribosomal protein L22 yes no 2;3;4 7.6632E-16 186.02 By MS/MS By MS/MS By MS/MS 2 4 1 0.91225 0.91117 10.813 4 Median 0.95134 1 12.686 2 0 Median 0.91225 0.87851 4.6875 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74586000 37354000 37232000 38728000 19421000 19307000 35857000 17932000 17925000 0 0 0 0 0 0 0 0 0 0 0 0 30499 1382 32060 159340;159341;159342;159343;159344;159345;159346 160256;160257;160258;160259;160260;160261;160262;160263;160264 160257 9 SKKVEEAEPEEFVVEK NKTTLQKMGKKQNGKSKKVEEAEPEEFVVE KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K S K E K V 1 0 0 0 0 0 6 0 0 0 0 3 0 1 1 1 0 0 0 3 0 0 16 2 1875.9466 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 19 34 CBX3 Chromobox protein homolog 3 yes no 3 0.00031427 40.014 By matching By MS/MS 1 1 1.1931 1.2162 0.80838 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3303 1.2232 NaN 1 0 Median 1.07 1.2093 NaN 1 0 Median NaN NaN NaN 0 0 Median 13787000 6367900 7419500 0 0 0 0 0 0 0 0 0 2338100 1020200 1317800 11449000 5347700 6101600 0 0 0 30500 2795 32061 159347;159348 160265;160266 160265 2 SKLAAAILGGVDQIHIKPGAK EGDDKIEYRAWNPFRSKLAAAILGGVDQIH ILGGVDQIHIKPGAKVLYLGAASGTTVSHV R S K A K V 4 0 0 1 0 1 0 3 1 3 2 3 0 0 1 1 0 0 0 1 0 0 21 2 2086.2263 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 142 162 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3 0.00043061 27.72 By MS/MS 1 0.88509 0.9684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88509 0.9684 NaN 1 0 Median NaN NaN NaN 0 0 Median 13579000 7052300 6527000 0 0 0 0 0 0 0 0 0 0 0 0 13579000 7052300 6527000 0 0 0 30501 2097 32062 159349 160267;160268 160267 2 SKLESELANFGPR EQTKTRHLALNLQEKSKLESELANFGPRIN EKSKLESELANFGPRINDIKRIIQSREREM K S K P R I 1 1 1 0 0 0 2 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 13 1 1446.7467 Q14683;G8JLG1 Q14683 735 747 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 3.0201E-07 131.17 By MS/MS By MS/MS By matching By MS/MS 2 2 1 4 0.79576 0.90586 19.162 9 Median 0.98877 0.99549 4.8717 2 0 Median NaN NaN NaN 0 0 Median 0.8972 1.0108 20.439 2 0 Median 1.1139 1.0754 NaN 1 0 Median 0.67789 0.75903 14.458 4 2 Median NaN NaN NaN 0 0 Median 85927000 46664000 39263000 18264000 8881900 9382100 0 0 0 17672000 9946800 7725100 610240 253900 356340 49381000 27581000 21800000 0 0 0 30502 2889 32063 159350;159351;159352;159353;159354;159355;159356;159357;159358 160269;160270;160271;160272;160273;160274;160275;160276;160277;160278;160279;160280 160274 12 SKLETAIASHQQAMEELK EHANKENSDVIALWKSKLETAIASHQQAME ETAIASHQQAMEELKVSFSKGLGTETAEFA K S K L K V 3 0 0 0 0 2 3 0 1 1 2 2 1 0 0 2 1 0 0 0 0 0 18 1 2013.0201 J3KP58;P30622;F5H0N7;F5H6A0 J3KP58 579 596 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 3 0.0080683 34.004 By MS/MS By MS/MS 1 1 0.65017 0.62449 60.784 2 Median 0.42645 0.40631 NaN 1 1 Median 0.99125 0.95982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21454000 16111000 5343200 18856000 14776000 4079800 2597900 1334600 1263400 0 0 0 0 0 0 0 0 0 0 0 0 30503 1308 32064 159359;159360 160281;160282 160281 2 SKLGESQTLQQFSR LDRWRRLKAQMIEKRSKLGESQTLQQFSRD RSKLGESQTLQQFSRDVDEIEAWISEKLQT R S K S R D 0 1 0 0 0 3 1 1 0 0 2 1 0 1 0 3 1 0 0 0 0 0 14 1 1607.8267 A0A0D9SF54;Q13813 Q13813 1545 1558 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 6.62E-09 151.74 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 0.9808 1.1397 45.387 8 Median 1.2294 1.246 1.7896 2 0 Median NaN NaN NaN 0 0 Median 0.96344 1.1544 0.90426 2 0 Median NaN NaN NaN 0 0 Median 0.91484 1.0379 70.322 3 1 Median 0.99162 0.88086 NaN 1 0 Median 95082000 47277000 47805000 10935000 5453100 5482000 0 0 0 56782000 27203000 29580000 0 0 0 24034000 13118000 10916000 3330700 1502900 1827800 30504 264;2838 32065 159361;159362;159363;159364;159365;159366;159367;159368 160283;160284;160285;160286;160287;160288;160289;160290;160291 160285 9 SKLHLVDLAGSER SLEQRKKSDKNSSFRSKLHLVDLAGSERQK FRSKLHLVDLAGSERQKKTKAEGDRLKEGI R S K E R Q 1 1 0 1 0 0 1 1 1 0 3 1 0 0 0 2 0 0 0 1 0 0 13 1 1423.7783 O95239;Q2VIQ3 O95239 234 246 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 0.00015757 72.175 By MS/MS By matching 1 1 1.121 1.1186 12.892 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0805 1.2253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1631 1.0211 NaN 1 0 Median 21688000 7992300 13695000 0 0 0 0 0 0 21022000 7685900 13337000 0 0 0 0 0 0 665190 306390 358800 30505 1757 32066 159369;159370 160292;160293 160293 2 SKLILFPR TESLQANVQRLKEYRSKLILFPRKPSAPKK QRLKEYRSKLILFPRKPSAPKKGDSSAEEL R S K P R K 0 1 0 0 0 0 0 0 0 1 2 1 0 1 1 1 0 0 0 0 0 0 8 1 972.61204 P26373 P26373 122 129 RPL13 60S ribosomal protein L13 yes yes 2 0.013467 104.21 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1 1.0377 1.0574 4.1697 6 Median 1.0237 1.0507 3.6049 2 0 Median 1.0691 0.99016 NaN 1 0 Median 1.0086 1.0374 NaN 1 0 Median 1.2204 1.0803 NaN 1 0 Median 1.0448 1.1094 NaN 1 0 Median NaN NaN NaN 0 0 Median 68495000 33512000 34983000 25772000 13051000 12721000 7150500 3582500 3568000 2344200 1109100 1235100 3266600 1582700 1683800 29961000 14186000 15775000 0 0 0 30506 2144 32067 159371;159372;159373;159374;159375;159376 160294;160295;160296;160297;160298;160299;160300 160295 7 SKLNTITPVVGK PKKSKTSGASKTKGKSKLNTITPVVGKKRK KGKSKLNTITPVVGKKRKRNTSSDNSDVEV K S K G K K 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 1 2 0 0 2 0 0 12 1 1255.75 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4 Q9HCK8 531 542 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 0.023157 42.395 By MS/MS 1 0.83259 0.95453 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83259 0.95453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1117400 593610 523820 0 0 0 0 0 0 1117400 593610 523820 0 0 0 0 0 0 0 0 0 30507 4030 32068 159377 160301 160301 1 SKLPKPVQDLIK DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K S K I K M 0 0 0 1 0 1 0 0 0 1 2 3 0 0 2 1 0 0 0 1 0 0 12 2 1364.8391 P09874 P09874 663 674 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.1169E-06 115.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 11 7 3 4 0.82822 0.8959 13.305 27 Median 0.80511 0.85133 16.979 3 0 Plateau NaN NaN NaN 0 0 Median 0.76311 0.8873 7.0237 10 0 Median 0.97343 0.99544 10.997 7 0 Median 0.8036 0.8959 5.1942 3 0 Median 0.95713 0.98739 21.667 4 0 Median 593520000 317930000 275590000 17822000 8496700 9325200 0 0 0 441000000 242470000 198520000 79859000 39073000 40786000 26060000 13737000 12323000 28778000 14150000 14628000 30508 1922 32069 159378;159379;159380;159381;159382;159383;159384;159385;159386;159387;159388;159389;159390;159391;159392;159393;159394;159395;159396;159397;159398;159399;159400;159401;159402;159403;159404;159405 160302;160303;160304;160305;160306;160307;160308;160309;160310;160311;160312;160313;160314;160315;160316;160317;160318;160319;160320;160321;160322;160323;160324;160325;160326;160327;160328;160329;160330;160331;160332;160333;160334;160335;160336;160337;160338;160339;160340;160341;160342;160343;160344;160345 160336 43 SKLPNTVLGK NGKITGANAKKEMVKSKLPNTVLGKIWKLA KEMVKSKLPNTVLGKIWKLADVDKDGLLDD K S K G K I 0 0 1 0 0 0 0 1 0 0 2 2 0 0 1 1 1 0 0 1 0 0 10 1 1055.6339 A0A024R571;Q9H4M9 A0A024R571 488 497 EHD1 EH domain-containing protein 1 yes no 2 0.050423 43.635 By MS/MS By matching By matching 1 2 1 1.1329 1.0388 6.5535 4 Median 0.98383 0.93136 NaN 1 0 Median 1.1331 1.0645 2.8335 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1603 1.0342 NaN 1 0 Median 11528000 4991600 6536300 3751500 1606000 2145400 5524800 2441400 3083400 0 0 0 0 0 0 0 0 0 2251700 944220 1307500 30509 5 32070 159406;159407;159408;159409 160346 160346 1 SKLSEIVR RYLVIDEAHRIKNEKSKLSEIVREFKTTNR HRIKNEKSKLSEIVREFKTTNRLLLTGTPL K S K V R E 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 8 1 930.54983 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 318 325 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.028194 73.26 By MS/MS By matching By MS/MS 1 2 3 1.1513 1.0629 12.086 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93868 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0636 1.1867 16.676 2 0 Median 1.1713 1.0629 13.199 3 0 Median 18249000 8646900 9602100 0 0 0 0 0 0 4404100 2153600 2250500 0 0 0 7974500 4070800 3903600 5870500 2422600 3447900 30510 1608;643;167 32071 159410;159411;159412;159413;159414;159415 160347;160348;160349 160347 3 SKLTFSCLGGSDNFK FCVEDSKDVNVNFEKSKLTFSCLGGSDNFK SKLTFSCLGGSDNFKHLNEIDLFHCIDPND K S K F K H 0 0 1 1 1 0 0 2 0 0 2 2 0 2 0 3 1 0 0 0 0 0 15 1 1659.7927 Q15185;A0A087WYT3 Q15185 34 48 PTGES3 Prostaglandin E synthase 3 yes no 2 6.8092E-05 85.845 By MS/MS By MS/MS 1 1 1.0816 1.017 2.6493 2 Median 1.0364 1.0362 NaN 1 0 Median 1.1289 0.99814 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10153000 4463800 5688900 7636500 3328700 4307900 2516200 1135100 1381100 0 0 0 0 0 0 0 0 0 0 0 0 30511 87 32072 159416;159417 160350;160351 160350 2 SKLVLPAPQISDAELQEVVK AILQTSGVSEFTKKRSKLVLPAPQISDAEL PAPQISDAELQEVVKVGQASEIARQTAEES R S K V K V 2 0 0 1 0 2 2 0 0 1 3 2 0 0 2 2 0 0 0 3 0 0 20 1 2163.2151 Q99459 Q99459 293 312 CDC5L Cell division cycle 5-like protein yes yes 3 0.029139 14.161 By MS/MS 1 0.6511 0.745 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6511 0.745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1820800 1033900 786830 0 0 0 0 0 0 1820800 1033900 786830 0 0 0 0 0 0 0 0 0 30512 3745 32073 159418 160352 160352 1 SKMDVAQSELDIYLSR EKELMGFSKSVNEARSKMDVAQSELDIYLS KMDVAQSELDIYLSRHNTAVSQLTKAKEAL R S K S R H 1 1 0 2 0 1 1 0 0 1 2 1 1 0 0 3 0 0 1 1 0 0 16 1 1853.9193 Q9NTJ3;E9PD53 Q9NTJ3 497 512 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 4.9735E-09 117.07 By MS/MS By matching 2 2 1.1461 1.1906 9.9689 4 Median 1.1461 1.1583 8.1932 2 0 Median NaN NaN NaN 0 0 Median 1.1108 1.2621 12.545 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15014000 6252800 8760800 9260400 4137200 5123300 0 0 0 5753200 2115600 3637600 0 0 0 0 0 0 0 0 0 30513 4108 32074 159419;159420;159421;159422 160353;160354;160355;160356 160356 4 SKNILFVITKPDVYK GLRQVTGVTRVTIRKSKNILFVITKPDVYK SKNILFVITKPDVYKSPASDTYIVFGEAKI K S K Y K S 0 0 1 1 0 0 0 0 0 2 1 3 0 1 1 1 1 0 1 2 0 0 15 2 1764.0186 F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3;F8W1N5;F8VNW4;F8VZ58;Q9BZK3 F8VZJ2 20 34 NACA;NACAP1 Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 3 0.00011856 58.83 By MS/MS By MS/MS 1 1 1.0709 1.0649 1.4566 2 Median 1.009 1.054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1366 1.0759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48960000 24416000 24544000 46419000 23143000 23276000 0 0 0 0 0 0 2541100 1273300 1267800 0 0 0 0 0 0 30514 907 32075 159423;159424 160357;160358 160357 2 SKPGAAMVEMADGYAVDR VFCLYGNVEKVKFMKSKPGAAMVEMADGYA GAAMVEMADGYAVDRAITHLNNNFMFGQKL K S K D R A 4 1 0 2 0 0 1 2 0 0 0 1 2 0 1 1 0 0 1 2 0 0 18 1 1866.8604 A0A3B3ITJ4;M0QXS5;P14866;M0QYT0 P14866 417 434 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2;3 1.6114E-14 159.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 21 17 28 23 0.94619 0.93133 19.118 91 Median 1.6501 1.6558 NaN 1 0 Median 1.0035 0.9223 7.9247 2 0 Median 0.82284 0.92521 20.724 21 0 Median 1.0806 0.99126 22.677 16 3 Median 0.83274 0.87879 13.697 28 4 Median 1.1049 0.99472 15.85 23 0 Median 1805900000 936150000 869710000 9192300 3202600 5989700 4101600 1967600 2134000 909140000 480790000 428350000 116690000 55478000 61209000 716540000 372610000 343920000 50206000 22103000 28103000 30515 2011;436;1419 32076;32077;32078 159425;159426;159427;159428;159429;159430;159431;159432;159433;159434;159435;159436;159437;159438;159439;159440;159441;159442;159443;159444;159445;159446;159447;159448;159449;159450;159451;159452;159453;159454;159455;159456;159457;159458;159459;159460;159461;159462;159463;159464;159465;159466;159467;159468;159469;159470;159471;159472;159473;159474;159475;159476;159477;159478;159479;159480;159481;159482;159483;159484;159485;159486;159487;159488;159489;159490;159491;159492;159493;159494;159495;159496;159497;159498;159499;159500;159501;159502;159503;159504;159505;159506;159507;159508;159509;159510;159511;159512;159513;159514;159515;159516 160359;160360;160361;160362;160363;160364;160365;160366;160367;160368;160369;160370;160371;160372;160373;160374;160375;160376;160377;160378;160379;160380;160381;160382;160383;160384;160385;160386;160387;160388;160389;160390;160391;160392;160393;160394;160395;160396;160397;160398;160399;160400;160401;160402;160403;160404;160405;160406;160407;160408;160409;160410;160411;160412;160413;160414;160415;160416;160417;160418;160419;160420;160421;160422;160423;160424;160425;160426;160427;160428;160429;160430;160431;160432;160433;160434;160435;160436;160437;160438;160439;160440;160441;160442;160443;160444;160445;160446;160447;160448;160449;160450;160451;160452;160453;160454;160455;160456;160457 160451 193;194 99 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR ______________________________ LHAAMADTFLEHMCRLDIDSPPITARNTGI M S K C R L 5 1 0 1 1 3 2 1 3 1 2 1 2 2 1 2 3 0 0 0 0 0 31 1 3512.6388 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3;P14618;B4DNK4 P14618 2 32 PKM Pyruvate kinase;Pyruvate kinase PKM no no 5 5.0184E-15 59.65 By MS/MS By matching 1 2 1.0923 1.0943 19.443 3 Plateau 1.0923 1.0943 NaN 1 0 Median 0.91907 0.846 17.737 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35735000 16516000 19219000 22477000 10308000 12168000 13258000 6207800 7050600 0 0 0 0 0 0 0 0 0 0 0 0 30516 2005;1237 32079 159517;159518;159519 160458;160459 160458 2 SKPIPIMPASPQK MLKTSKAEELLAEEKSKPIPIMPASPQKGH EKSKPIPIMPASPQKGHAVNLLDVPVPVAR K S K Q K G 1 0 0 0 0 1 0 0 0 2 0 2 1 0 4 2 0 0 0 0 0 0 13 1 1392.7799 O00429 O00429 607 619 DNM1L Dynamin-1-like protein yes yes 3 0.006035 31.526 By MS/MS By matching 1 1 0.58527 0.58554 2.7745 2 Median 0.57604 0.59714 NaN 1 0 Median 0.59465 0.57416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1947400 1191600 755760 1188900 718030 470830 758500 473570 284930 0 0 0 0 0 0 0 0 0 0 0 0 30517 1463 32080 159520;159521 160460 160460 1 SKPLAASPKPAGLK TKTKSSSPVKKSDGKSKPLAASPKPAGLKE KSKPLAASPKPAGLKESSDKVSRVASPKKK K S K L K E 3 0 0 0 0 0 0 1 0 0 2 3 0 0 3 2 0 0 0 0 0 0 14 2 1363.8187 P46821 P46821 2265 2278 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.00033054 52.265 By MS/MS 1 0.82629 0.78221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82629 0.78221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1156000 590810 565230 0 0 0 0 0 0 0 0 0 1156000 590810 565230 0 0 0 0 0 0 30518 2347 32081 159522 160461;160462 160462 2 SKPLMLIAPKPQDK QVTAMIGHTNVVVPRSKPLMLIAPKPQDKK RSKPLMLIAPKPQDKKSMGLPPRIGSLASG R S K D K K 1 0 0 1 0 1 0 0 0 1 2 3 1 0 3 1 0 0 0 0 0 0 14 2 1564.9011 Q9H2P0;A0A2R8Y6X0 Q9H2P0 265 278 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 0.040242 17.489 By matching By matching By MS/MS By matching 1 1 2 1 0.53147 0.58699 20.903 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53147 0.58699 NaN 1 0 Median 0.80502 0.8244 NaN 1 0 Median 0.47329 0.54068 1.8429 2 0 Median 0.7306 0.79382 NaN 1 0 Median 9602300 6009900 3592400 0 0 0 0 0 0 1361200 806950 554280 543030 283170 259860 7046800 4568100 2478700 651300 351690 299610 30519 3946 32082 159523;159524;159525;159526;159527 160463 160463 1 SKQAILAAQR VTVLRKKGPTAAQAKSKQAILAAQRRGEDV AAQAKSKQAILAAQRRGEDVETSKKWAAGQ K S K Q R R 3 1 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 1 1084.6353 O60869 O60869 24 33 EDF1 Endothelial differentiation-related factor 1 yes yes 2 0.029276 49.418 By matching By MS/MS 1 1 1.0221 0.9729 17.403 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0749 1.1003 NaN 1 0 Median 0.97181 0.86026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1466400 690830 775590 0 0 0 0 0 0 1060000 489340 570620 406460 201490 204970 0 0 0 0 0 0 30520 1635 32083 159528;159529 160464;160465 160464 2 SKQEALKNDLVEALK DIVNGLRSVQTFADKSKQEALKNDLVEALK SKQEALKNDLVEALKRKQQC__________ K S K L K R 2 0 1 1 0 1 2 0 0 0 3 3 0 0 0 1 0 0 0 1 0 0 15 2 1684.9359 B1AK87;B1AK88 B1AK87 241 255 CAPZB yes no 3 0.0015524 35.757 By MS/MS By matching By MS/MS 2 2 1 1.117 1.1109 6.7104 5 Median 1.0714 1.1253 7.6062 2 0 Median 1.201 1.1841 9.1981 2 0 Median 1.0763 1.1109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18786000 8465200 10320000 10436000 4674300 5761800 3773100 1618900 2154200 4576300 2172000 2404300 0 0 0 0 0 0 0 0 0 30521 566 32084 159530;159531;159532;159533;159534 160466;160467 160467 2 SKSEEAHAEDSVMDHHFR EGADGQWKKGFVLHKSKSEEAHAEDSVMDH EEAHAEDSVMDHHFRKPANDITSQLEINFG K S K F R K 2 1 0 2 0 0 3 0 3 0 0 1 1 1 0 3 0 0 0 1 0 0 18 1 2110.9127 Q8NC51 Q8NC51 328 345 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3;4;5 3.7097E-06 51.606 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 6 7 1 1.1336 1.1094 16.228 21 Median 1.0603 1.0539 3.1651 3 0 Plateau 1.2804 1.182 27.176 4 0 Median 1.1611 1.2466 16.447 6 0 Median 1.2067 1.1272 11.144 7 0 Median 1.0686 1.1094 NaN 1 0 Median NaN NaN NaN 0 0 Median 117380000 54997000 62379000 24642000 11408000 13234000 15291000 7200900 8090300 33272000 15499000 17773000 42248000 19991000 22257000 1922800 897320 1025500 0 0 0 30522 3414 32085 159535;159536;159537;159538;159539;159540;159541;159542;159543;159544;159545;159546;159547;159548;159549;159550;159551;159552;159553;159554;159555 160468;160469;160470;160471;160472;160473;160474;160475;160476;160477;160478;160479;160480;160481;160482;160483;160484;160485;160486;160487;160488;160489;160490;160491 160491 24 SKTFNPGAGLPTDK KGKRGAQLAKDIARRSKTFNPGAGLPTDKK RSKTFNPGAGLPTDKKKGGPSPGDVEAIKN R S K D K K 1 0 1 1 0 0 0 2 0 0 1 2 0 1 2 1 2 0 0 0 0 0 14 1 1431.7358 P09661;H0YMA0;H0YLR3 P09661 178 191 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 0.00014106 75.739 By matching By MS/MS By MS/MS 1 1 2 0.73376 0.76114 14.069 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71939 0.71987 NaN 1 0 Median 1.0817 0.97393 NaN 1 0 Median 0.7132 0.76114 6.7853 2 0 Median NaN NaN NaN 0 0 Median 20388000 10510000 9877900 0 0 0 0 0 0 3375400 1432200 1943200 3007600 1358600 1649000 14005000 7719500 6285700 0 0 0 30523 1920 32086 159556;159557;159558;159559 160492;160493;160494;160495;160496 160493 5 SKTFNPGAGLPTDKK KGKRGAQLAKDIARRSKTFNPGAGLPTDKK SKTFNPGAGLPTDKKKGGPSPGDVEAIKNA R S K K K K 1 0 1 1 0 0 0 2 0 0 1 3 0 1 2 1 2 0 0 0 0 0 15 2 1559.8308 P09661;H0YMA0;H0YLR3 P09661 178 192 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 3 0.00036582 42.813 By MS/MS 1 0.63558 0.69541 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63558 0.69541 NaN 1 0 Median NaN NaN NaN 0 0 Median 4775100 2621600 2153400 0 0 0 0 0 0 0 0 0 0 0 0 4775100 2621600 2153400 0 0 0 30524 1920 32087 159560 160497;160498 160497 2 SKTHAVLVALK AMEAVKQGSATVGLKSKTHAVLVALKRAQS VGLKSKTHAVLVALKRAQSELAAHQKKILH K S K L K R 2 0 0 0 0 0 0 0 1 0 2 2 0 0 0 1 1 0 0 2 0 0 11 1 1165.7183 P25786;F5GX11;B4DEV8 P25786 40 50 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2 0.02069 48.091 By MS/MS By matching 1 1 1.1044 1.044 28.064 2 Median 0.87899 0.85607 NaN 1 0 Median 1.3877 1.2731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8774500 4392300 4382200 7956000 4087900 3868100 818510 304390 514110 0 0 0 0 0 0 0 0 0 0 0 0 30525 2136 32088 159561;159562 160499 160499 1 SKTHAVLVALKR AMEAVKQGSATVGLKSKTHAVLVALKRAQS GLKSKTHAVLVALKRAQSELAAHQKKILHV K S K K R A 2 1 0 0 0 0 0 0 1 0 2 2 0 0 0 1 1 0 0 2 0 0 12 2 1321.8194 P25786;F5GX11;B4DEV8 P25786 40 51 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2;3 2.9559E-05 92.247 By MS/MS By MS/MS By matching 1 3 1 1.1949 1.176 12.774 5 Median 1.3698 1.4189 NaN 1 0 Median 1.1949 1.0499 6.9631 3 0 Median 1.0869 1.2169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10379000 4517400 5861100 3323500 1390000 1933500 6501600 2835800 3665900 553360 291620 261730 0 0 0 0 0 0 0 0 0 30526 2136 32089 159563;159564;159565;159566;159567 160500;160501;160502;160503 160502 4 SKTPEIYLAYR IERRALPEFFNGKNKSKTPEIYLAYRNFMI GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL K S K Y R N 1 1 0 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 2 0 0 0 11 1 1339.7136 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 456 466 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2;3 6.0829E-05 149.82 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 5 5 3 3 0.98027 1.0537 26.257 16 Median NaN NaN NaN 0 0 Median 1.1218 1.078 NaN 1 0 Median 0.79085 0.89757 11.403 4 1 Median 1.1137 1.0752 43.738 5 2 Median 0.77349 0.87656 20.422 3 1 Median 1.2883 1.1224 0.84599 3 0 Plateau 151540000 84659000 66880000 0 0 0 594650 238890 355760 107260000 61026000 46236000 19562000 10802000 8760000 21464000 11522000 9942400 2657300 1071400 1585900 30527 3455;3567 32090 159568;159569;159570;159571;159572;159573;159574;159575;159576;159577;159578;159579;159580;159581;159582;159583;159584 160504;160505;160506;160507;160508;160509;160510;160511;160512;160513;160514;160515;160516;160517;160518;160519;160520 160505 17 SKTPVQAAAVSIVEKPVTR PPVAAKDKKPNKSKRSKTPVQAAAVSIVEK VQAAAVSIVEKPVTRKSERIDREKLKRSNS R S K T R K 3 1 0 0 0 1 1 0 0 1 0 2 0 0 2 2 2 0 0 4 0 0 19 2 1980.1368 Q96T58 Q96T58 1824 1842 SPEN Msx2-interacting protein yes yes 3;4 3.4108E-08 65.924 By MS/MS 2 0.68503 0.90905 0.51386 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68503 0.90905 0.51386 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22985000 12795000 10190000 0 0 0 0 0 0 22985000 12795000 10190000 0 0 0 0 0 0 0 0 0 30528 3741 32091 159585;159586 160521;160522;160523 160522 3 SKTVYSILR VSPEEAIKCEDKFTKSKTVYSILRHVAEVL EDKFTKSKTVYSILRHVAEVLEYTKDEQLE K S K L R H 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 1 1 0 0 9 1 1065.6182 P05198;G3V4T5;H0YJS4 P05198 105 113 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.043302 49.418 By MS/MS 1 1.1918 1.1247 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1918 1.1247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1988800 958670 1030200 0 0 0 0 0 0 0 0 0 1988800 958670 1030200 0 0 0 0 0 0 30529 1862 32092 159587 160524 160524 1 SKVDEAVAVLQAHHAK NSELLHMLESPESLRSKVDEAVAVLQAHHA KVDEAVAVLQAHHAKKEAAQKVGAVAAATS R S K A K K 4 0 0 1 0 1 1 0 2 0 1 2 0 0 0 1 0 0 0 3 0 0 16 1 1701.9162 B1ANR0;Q13310;H0YER0;H0Y5F5;H0Y6X6 B1ANR0 585 600 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 3;4 2.7835E-06 85.493 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 2 4 2 2 1.1483 1.1705 24.47 17 Median 1.2212 1.2515 14.452 3 0 Plateau 1.1071 1.0709 5.0228 4 0 Median 1.2044 1.3512 20.306 2 0 Median 1.2735 1.2095 21.881 4 0 Median 1.3753 1.5406 2.5964 2 0 Median 0.79944 0.71733 17.968 2 1 Median 91923000 42607000 49316000 42991000 20058000 22933000 11922000 5298600 6623100 14909000 7780600 7128700 6435800 3118700 3317100 12411000 4674100 7736900 3253600 1676800 1576900 30530 576;1151 32093 159588;159589;159590;159591;159592;159593;159594;159595;159596;159597;159598;159599;159600;159601;159602;159603;159604 160525;160526;160527;160528;160529;160530;160531;160532;160533;160534;160535;160536;160537;160538;160539;160540;160541 160540 17 SKVDEAVAVLQAHQAK NSELLHMLESPESLRSKVDEAVAVLQAHQA KVDEAVAVLQAHQAKEAAQKAVNSATGVPT R S K A K E 4 0 0 1 0 2 1 0 1 0 1 2 0 0 0 1 0 0 0 3 0 0 16 1 1692.9159 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YB75;H0YAS6;H0YAS7;H0YC10 P11940 605 620 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2;3 8.4805E-38 150.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 3 2 3 1.0749 0.97772 28.19 16 Median 1.2121 1.247 10.51 3 1 Median 0.98262 0.90495 15.967 4 0 Median 1.1708 1.2755 NaN 1 0 Median 1.1381 1.1118 14.112 3 0 Median 0.80987 0.87683 64.651 2 0 Median 1.0262 0.91959 19.574 3 0 Plateau 326780000 146220000 180560000 124440000 54278000 70163000 42247000 20035000 22212000 71963000 31593000 40370000 17828000 8496300 9331700 40326000 16719000 23607000 29975000 15103000 14872000 30531 1973 32094 159605;159606;159607;159608;159609;159610;159611;159612;159613;159614;159615;159616;159617;159618;159619;159620;159621 160542;160543;160544;160545;160546;160547;160548;160549;160550;160551;160552;160553;160554;160555;160556;160557 160545 16 SKVDQIQEIVTGNPTVIK LLLRLFKTALQEEIKSKVDQIQEIVTGNPT DQIQEIVTGNPTVIKMVVSFNRGARGQNAL K S K I K M 0 0 1 1 0 2 1 1 0 3 0 2 0 0 1 1 2 0 0 3 0 0 18 1 1968.0892 P46940;A0A0J9YXZ5;H0YLE8 P46940 1036 1053 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 4.4526E-12 145.71 By MS/MS 3 0.78062 0.73286 12.823 3 Median 0.78062 0.73286 12.823 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89197000 46803000 42395000 89197000 46803000 42395000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30532 2350 32095 159622;159623;159624 160558;160559;160560;160561 160559 4 SKVEETTEHLVTK HGKDKENRGINTLERSKVEETTEHLVTKSR ERSKVEETTEHLVTKSRLPLRAQINL____ R S K T K S 0 0 0 0 0 0 3 0 1 0 1 2 0 0 0 1 3 0 0 2 0 0 13 1 1499.7831 P52732 P52732 1033 1045 KIF11 Kinesin-like protein KIF11 yes yes 3 0.033369 30.998 By MS/MS 1 0.76651 0.80643 NaN 1 Median 0.76651 0.80643 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5218800 2364800 2854000 5218800 2364800 2854000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30533 2454 32096 159625 160562 160562 1 SKVPVLDEGLTSVETYTPAIR LCAPSVYEGKIFTQKSKVPVLDEGLTSVET DEGLTSVETYTPAIRANDNKSMADVLGDGG K S K I R A 1 1 0 1 0 0 2 1 0 1 2 1 0 0 2 2 3 0 1 3 0 0 21 1 2274.2107 Q8WYP5 Q8WYP5 1426 1446 AHCTF1 Protein ELYS yes yes 3 9.1487E-07 46.362 By MS/MS 1 0.72775 0.87243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72775 0.87243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4808300 2714900 2093400 0 0 0 0 0 0 4808300 2714900 2093400 0 0 0 0 0 0 0 0 0 30534 3524 32097 159626 160563;160564 160563 2 SKVTLLEGDHVR FVIPKELPFGDKDTKSKVTLLEGDHVRFNI DTKSKVTLLEGDHVRFNISTDRRDKLERAT K S K V R F 0 1 0 1 0 0 1 1 1 0 2 1 0 0 0 1 1 0 0 2 0 0 12 1 1352.7412 O75534;E9PLT0 O75534 306 317 CSDE1 Cold shock domain-containing protein E1 yes no 3 0.00019147 71.176 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1783 1.1318 21.298 5 Median 1.0928 1.1129 13.475 2 0 Median 0.8988 0.8988 NaN 1 0 Median 1.3879 1.5782 NaN 1 0 Median 1.1783 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11605000 6077500 5527400 6718000 3618300 3099700 2102400 1116600 985880 2164700 1029900 1134800 619720 312700 307020 0 0 0 0 0 0 30535 1684 32098 159627;159628;159629;159630;159631 160565;160566;160567;160568;160569;160570 160569 6 SKVTVDTGVIPASEEK KQKESQRKFEEETVKSKVTVDTGVIPASEE KVTVDTGVIPASEEKAETPTAAEDDNEGDK K S K E K A 1 0 0 1 0 0 2 1 0 1 0 2 0 0 1 2 2 0 0 3 0 0 16 1 1658.8727 A0A087WUT6;O60841 A0A087WUT6 283 298 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.04051 23.329 By MS/MS 1 1.2192 1.1451 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2192 1.1451 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2800500 992080 1808400 0 0 0 0 0 0 0 0 0 2800500 992080 1808400 0 0 0 0 0 0 30536 35 32099 159632 160571 160571 1 SKWEGNYLFPR LLKFVQLEGAHPLEKSKWEGNYLFPRELFK PLEKSKWEGNYLFPRELFKLVVGGLLSPEE K S K P R E 0 1 1 0 0 0 1 1 0 0 1 1 0 1 1 1 0 1 1 0 0 0 11 1 1395.6935 Q9BVI4;F5H303 Q9BVI4 137 147 NOC4L Nucleolar complex protein 4 homolog yes no 3 0.027946 23.376 By MS/MS 1 1.2058 1.2532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2058 1.2532 NaN 1 0 Median NaN NaN NaN 0 0 Median 2684100 1286200 1398000 0 0 0 0 0 0 0 0 0 0 0 0 2684100 1286200 1398000 0 0 0 30537 3854 32100 159633 160572 160572 1 SKYDILMEK HSILLLLNRFHVDRRSKYDILMEKLSVMLS FHVDRRSKYDILMEKLSVMLSTRTNHIETL R S K E K L 0 0 0 1 0 0 1 0 0 1 1 2 1 0 0 1 0 0 1 0 0 0 9 1 1125.574 Q12789 Q12789 253 261 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.023743 58.916 By matching By MS/MS 1 1 0.58713 0.67906 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58713 0.67906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11675000 5319000 6355900 0 0 0 2790600 424640 2365900 8884300 4894300 3990000 0 0 0 0 0 0 0 0 0 30538 2758 32101 159634;159635 160573 160573 1 SKYEALQTFAR ASENASMKLELDALRSKYEALQTFARTVAR DALRSKYEALQTFARTVARSPVAPARGPLA R S K A R T 2 1 0 0 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 11 1 1312.6776 O15525;O60675 O15525 109 119 MAFG;MAFK Transcription factor MafG;Transcription factor MafK yes no 2 0.0012908 73.067 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.69661 0.74979 19.293 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74605 0.77462 NaN 1 0 Median 0.88425 0.78275 NaN 1 0 Median 0.64428 0.72576 NaN 1 0 Median 0.65045 0.52015 NaN 1 0 Median 12826000 7187400 5638900 0 0 0 0 0 0 5908000 3262400 2645600 1155800 522260 633550 3765700 2175700 1590100 1996700 1227100 769640 30539 1552 32102 159636;159637;159638;159639 160574;160575;160576 160576 3 SKYEIAVETEMKK EDGLLNLIRTMPGKKSKYEIAVETEMKKES KKSKYEIAVETEMKKESKLERTPQKNVQGK K S K K K E 1 0 0 0 0 0 3 0 0 1 0 3 1 0 0 1 1 0 1 1 0 0 13 2 1554.7963 P35251 P35251 487 499 RFC1 Replication factor C subunit 1 yes yes 3 0.010614 58.831 By MS/MS 1 0.95541 1.1481 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95541 1.1481 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8251000 4854200 3396800 0 0 0 0 0 0 8251000 4854200 3396800 0 0 0 0 0 0 0 0 0 30540 2239 32103 159640 160577 160577 1 SKYTTPSGEVR DFVGELNDKMKGFYRSKYTTPSGEVRYAAV GFYRSKYTTPSGEVRYAAVTQFEATDARRA R S K V R Y 0 1 0 0 0 0 1 1 0 0 0 1 0 0 1 2 2 0 1 1 0 0 11 1 1223.6146 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 158 168 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.061984 37.556 By matching By MS/MS 1 1 0.87928 0.89517 0.57533 2 Median 0.86292 0.89154 NaN 1 0 Median 0.89595 0.89882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1652300 799040 853240 566350 237570 328780 1085900 561470 524460 0 0 0 0 0 0 0 0 0 0 0 0 30541 960 32104 159641;159642 160578 160578 1 SLAAEEEAAR EEERRRREAEERVQKSLAAEEEAARQRKAA ERVQKSLAAEEEAARQRKAALEEVERLKAK K S L A R Q 4 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1045.504 Q15149 Q15149 2130 2139 PLEC Plectin yes yes 2 0.00035783 106.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1.3275 1.1685 15.198 6 Median NaN NaN NaN 0 0 Median 1.3286 1.1165 10.249 2 0 Median 1.2053 1.3477 NaN 1 0 Median 1.2089 1.0517 NaN 1 0 Median 1.4623 1.5363 NaN 1 0 Median 1.3706 1.1374 NaN 1 0 Median 23194000 10268000 12926000 0 0 0 13057000 5881200 7175800 1760200 844520 915650 844310 362900 481410 3334900 1294800 2040100 4197800 1884600 2313200 30542 2933 32105 159643;159644;159645;159646;159647;159648 160579;160580;160581;160582;160583;160584;160585;160586;160587;160588;160589 160581 11 SLAAETTEEEEEEEEVPWTQHEFELAQWAFR YESKLQALQKQVETRSLAAETTEEEEEEEE PWTQHEFELAQWAFRKWKSHQFTSLRDLLW R S L F R K 4 1 0 0 0 2 11 0 1 0 2 0 0 2 1 1 3 2 0 1 0 0 31 0 3749.6645 A0A087WWA3;Q4R9M9;O60333 A0A087WWA3 696 726 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B yes no 7 0.064836 1.8274 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 788520 788520 0 0 0 0 788520 788520 0 0 0 0 0 0 0 0 0 0 0 0 0 30543 57 32106 159649 160590 160590 1 SLAAEWGK VPSASAKAGVEAMSKSLAAEWGKYGMRFNV GVEAMSKSLAAEWGKYGMRFNVIQPGPIKT K S L G K Y 2 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 8 0 860.43922 Q16698 Q16698 223 230 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes yes 2 0.014714 50.703 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.146 1.0496 15.606 4 Median 1.0509 0.989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5308 1.291 NaN 1 0 Median 0.80279 0.89949 NaN 1 0 Median 1.2497 1.1138 NaN 1 0 Median 15513000 7343500 8169200 6448400 2870700 3577700 0 0 0 0 0 0 2473100 944980 1528100 4979800 2891400 2088500 1611400 636470 974980 30544 2994 32107 159650;159651;159652;159653 160591;160592 160591 2 SLAALSQIAYQR ______________________________ GRRSLAALSQIAYQRNDDDEEEAARERRRR R S L Q R N 3 1 0 0 0 2 0 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 12 0 1319.7197 E9PGZ1;E7EX44 E9PGZ1 12 23 CALD1 yes no 2 1.6177E-09 174.41 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0839 1.0204 17.618 4 Median 1.1906 1.1605 NaN 1 0 Median 0.98673 0.89717 NaN 1 0 Median 0.86866 0.88268 NaN 1 0 Median 1.4759 1.2454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17826000 9472000 8354000 3037400 1348500 1688800 460870 264540 196330 13837000 7623900 6213400 490500 235030 255470 0 0 0 0 0 0 30545 928 32108 159654;159655;159656;159657 160593;160594;160595;160596 160596 4 SLAASSSFYGQR ILADSRHLWSPFGLRSLAASSSFYGQRNSE GLRSLAASSSFYGQRNSEHDPPYWRGAVWL R S L Q R N 2 1 0 0 0 1 0 1 0 0 1 0 0 1 0 4 0 0 1 0 0 0 12 0 1272.6099 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 730 741 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 5.5654E-06 123.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1.4287 1.3246 13.676 6 Median 1.0848 1.0264 NaN 1 0 Median 1.279 1.1058 NaN 1 0 Median 1.3075 1.3899 NaN 1 0 Median 1.609 1.3866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6548 1.3442 8.5449 2 0 Median 34027000 15454000 18573000 11056000 5495900 5559900 6274000 2711500 3562400 8182600 3960900 4221700 6228400 2436000 3792400 0 0 0 2286600 849650 1437000 30546 2835 32109 159658;159659;159660;159661;159662;159663;159664 160597;160598;160599;160600;160601;160602;160603 160597 7 SLADELALVDVLEDK VGQVGMACAISILGKSLADELALVDVLEDK SLADELALVDVLEDKLKGEMMDLQHGSLFL K S L D K L 2 0 0 3 0 0 2 0 0 0 4 1 0 0 0 1 0 0 0 2 0 0 15 0 1628.8509 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 44 58 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2 3.7332E-08 140.45 By matching By MS/MS By MS/MS 1 4 2 1.1311 0.99917 16.532 7 Median 1.2514 1.2409 NaN 1 0 Median 1.1412 0.98136 15.92 4 0 Median 0.95705 0.98481 12.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32854000 14745000 18109000 370380 155590 214790 19518000 8534900 10983000 12966000 6054200 6911500 0 0 0 0 0 0 0 0 0 30547 1880 32110 159665;159666;159667;159668;159669;159670;159671 160604;160605;160606;160607;160608 160607 5 SLADELALVDVLEDKLK VGQVGMACAISILGKSLADELALVDVLEDK ADELALVDVLEDKLKGEMMDLQHGSLFLQT K S L L K G 2 0 0 3 0 0 2 0 0 0 5 2 0 0 0 1 0 0 0 2 0 0 17 1 1870.0299 P07195;A0A3B3IS95;A8MW50;C9J7H8;F5H793 P07195 44 60 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase yes no 2 0.00011271 74.46 By MS/MS By matching 1 1 1.0536 1.0342 10.757 2 Median NaN NaN NaN 0 0 Median 1.0533 0.95845 NaN 1 0 Median 1.0539 1.1159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 907980 433130 474860 0 0 0 606720 283880 322840 301260 149240 152020 0 0 0 0 0 0 0 0 0 30548 1880 32111 159672;159673 160609 160609 1 SLADFEK QTEALKCVAQASKNRSLADFEKALTDYRAE VAQASKNRSLADFEKALTDYRAELRDDPII R S L E K A 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 7 0 808.39668 O00231 O00231 298 304 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.015644 70.912 By MS/MS By MS/MS 1 2 1.036 0.88736 10.576 3 Median 0.94681 0.88703 NaN 1 0 Median 1.1342 0.97238 12.94 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13686000 6774400 6911700 7203400 3794900 3408500 6482700 2979500 3503200 0 0 0 0 0 0 0 0 0 0 0 0 30549 1448 32112 159674;159675;159676 160610;160611;160612;160613;160614 160614 5 SLADIAREEASNFR RHVGMAVAGLLADARSLADIAREEASNFRS RSLADIAREEASNFRSNFGYNIPLKHLADR R S L F R S 3 2 1 1 0 0 2 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 14 1 1577.7798 P25788;G3V4X5 P25788 87 100 PSMA3 Proteasome subunit alpha type-3 yes no 2;3 0.011084 42.001 By MS/MS By matching 2 1 1.2035 1.2864 15.404 3 Median 1.204 1.287 0.068599 2 0 Median 1.1606 0.98565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14891000 6136500 8754800 13957000 5698900 8258000 934460 437650 496810 0 0 0 0 0 0 0 0 0 0 0 0 30550 2137 32113 159677;159678;159679 160615;160616 160616 2 SLADVESQVSAQNK EELSLARGTIERLTKSLADVESQVSAQNKE KSLADVESQVSAQNKEKDTVLGRLALLQEE K S L N K E 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 3 0 0 0 2 0 0 14 0 1474.7264 Q14789;E7EU81 Q14789 1519 1532 GOLGB1 Golgin subfamily B member 1 yes no 2 1.1592E-44 185.77 By MS/MS By MS/MS By MS/MS 1 1 1 0.98818 0.93572 75.91 3 Plateau 0.9291 0.93219 NaN 1 1 Median 1.051 0.93572 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.26061 0.2508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43030000 22813000 20217000 22531000 12789000 9741300 18383000 8433400 9950100 0 0 0 2116300 1590500 525770 0 0 0 0 0 0 30551 2900 32114 159680;159681;159682 160617;160618;160619 160618 3 SLAEACSEGDVNAVR MRAESTANAGQSDNRSLAEACSEGDVNAVR SLAEACSEGDVNAVRKLLIEGRSVNEHTEE R S L V R K 3 1 1 1 1 0 2 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 15 0 1576.7151 H0YM23;O75179;A0A1W2PQ15 H0YM23 122 136 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 0.039043 24.343 By matching By matching By MS/MS By matching By matching By matching 1 3 2 2 1 1 1.2245 1.179 17.099 10 Median 0.98123 0.95517 NaN 1 0 Median 1.5983 1.4247 26.55 3 0 Median 1.2208 1.2059 1.1892 2 0 Median 1.3424 1.0559 13.597 2 0 Median 1.2828 1.2892 NaN 1 0 Median 1.2089 0.98141 NaN 1 0 Median 63534000 30447000 33086000 6238800 3177300 3061500 5003300 2301900 2701400 37395000 18174000 19222000 6574900 3110600 3464400 6824900 3012700 3812200 1496100 671410 824730 30552 1197 32115 159683;159684;159685;159686;159687;159688;159689;159690;159691;159692 160620 160620 1 SLAEGYFDAAGR MAQRAFPNPYADYNKSLAEGYFDAAGRLTP YNKSLAEGYFDAAGRLTPEFSQRLTNKIRE K S L G R L 3 1 0 1 0 0 1 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 12 0 1255.5833 O43813;E9PHS0;F8WDS9 O43813 16 27 LANCL1 LanC-like protein 1 yes no 2 6.1396E-05 94.309 By MS/MS By matching By MS/MS 1 1 3 0.8847 0.92381 26.412 4 Median 0.86839 0.86802 NaN 1 0 Median 1.2831 1.0961 NaN 1 0 Median 0.73798 0.7665 35.21 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41287000 21393000 19894000 21204000 10583000 10621000 1416500 575670 840830 18666000 10234000 8432200 0 0 0 0 0 0 0 0 0 30553 936 32116 159693;159694;159695;159696;159697 160621;160622;160623;160624;160625 160622 5 SLAEMESSHQQVMEELQR GHIPPGYISQEACERSLAEMESSHQQVMEE EMESSHQQVMEELQRHHERELQRLQQEKEW R S L Q R H 1 1 0 0 0 3 4 0 1 0 2 0 2 0 0 3 0 0 0 1 0 0 18 0 2130.9674 Q9H2D6 Q9H2D6 2114 2131 TRIOBP TRIO and F-actin-binding protein yes yes 3 0.055051 9.3701 By MS/MS By matching By matching By MS/MS By matching 1 1 2 1 1 0.93794 0.9527 17.313 6 Median 0.99027 0.98239 NaN 1 0 Median 1.1717 0.99617 NaN 1 0 Median 0.84649 0.85493 1.2838 2 0 Median 1.6264 1.3628 NaN 1 0 Median 0.88583 0.92391 NaN 1 0 Median NaN NaN NaN 0 0 Median 46995000 23819000 23176000 4995900 1917600 3078400 849870 359040 490840 35416000 18575000 16841000 806510 270510 536000 4926700 2697000 2229700 0 0 0 30554 3941 32117 159698;159699;159700;159701;159702;159703 160626;160627 160627 2 SLAESELR MDGKCKEIAEELFTRSLAESELRSAPYEFP AEELFTRSLAESELRSAPYEFPEESPIEQL R S L L R S 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 903.46616 H0Y360;Q01433;A0A590UK85;A0A590UJY6;E9PIJ1;E9PJF6 H0Y360 80 87 AMPD2 AMP deaminase 2 yes no 2 0.020415 46.426 By MS/MS 1 0.91931 0.79718 NaN 1 Median NaN NaN NaN 0 0 Median 0.91931 0.79718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2639700 1425800 1213900 0 0 0 2639700 1425800 1213900 0 0 0 0 0 0 0 0 0 0 0 0 30555 1141 32118 159704 160628 160628 1 SLAFHRPPYHLLQQR TLAESPRNGLQEKHKSLAFHRPPYHLLQQR SLAFHRPPYHLLQQRDSQDASAEQSDHDDE K S L Q R D 1 2 0 0 0 2 0 0 2 0 3 0 0 1 2 1 0 0 1 0 0 0 15 1 1862.0064 Q6P2E9 Q6P2E9 855 869 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3;4 2.4108E-19 113.76 By MS/MS By MS/MS 1 2 0.70065 0.79906 39.753 2 Median 0.98972 1.0584 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49601 0.60325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18421000 12773000 5648400 4053800 2067400 1986500 0 0 0 14367000 10705000 3662000 0 0 0 0 0 0 0 0 0 30556 3155 32119 159705;159706;159707 160629;160630;160631;160632;160633 160633 4 SLAGAAQILLK PKQNPQTLQLISKKKSLAGAAQILLKGAER SKKKSLAGAAQILLKGAERLTKSVTENQEN K S L L K G 3 0 0 0 0 1 0 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1083.6652 A0A1W2PRB8;A0A1W2PNF3;A0A1W2PPP8 A0A1W2PRB8 339 349 no no 2 0.0073128 42.599 By matching By MS/MS By matching 1 1 1 1.2993 1.1419 6.398 3 Median NaN NaN NaN 0 0 Median 1.3769 1.2417 NaN 1 0 Median 1.0546 1.0951 NaN 1 0 Median 1.2993 1.1419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7527500 3815700 3711800 0 0 0 626360 257810 368550 6521500 3398800 3122700 379730 159120 220610 0 0 0 0 0 0 30557 346 32120 159708;159709;159710 160634;160635 160635 2 SLAGMLTPYVAR LAEEQATPENPTIRKSLAGMLTPYVARKLA IRKSLAGMLTPYVARKLAVASVTEILKMLN K S L A R K 2 1 0 0 0 0 0 1 0 0 2 0 1 0 1 1 1 0 1 1 0 0 12 0 1277.6802 O75165 O75165 1608 1619 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.032829 27.115 By MS/MS 1 0.73714 0.73292 NaN 1 Median 0.73714 0.73292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2450100 1730600 719490 2450100 1730600 719490 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30558 1653 32121 159711 160636 160636 1 SLAGSSGPGASSGTSGDHGELVVR VILRDIARARENIQKSLAGSSGPGASSGTS ASSGTSGDHGELVVRIASLEVENQSLRGVV K S L V R I 2 1 0 1 0 0 1 6 1 0 2 0 0 0 1 6 1 0 0 2 0 0 24 0 2184.0407 E9PRY8;A0A087X1X7;E9PIZ1;H0YCK7;P29692;E9PK01;E9PPR1;E9PL12;E9PQ49;E9PI39;E9PMW7 P29692 60 83 EEF1D Elongation factor 1-delta no no 2;3 3.58E-77 218.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 6 7 3 6 1.1183 0.95664 24.921 29 Median 0.9762 0.91636 25.999 4 0 Median 1.0956 0.9107 35.213 3 1 Median 1.197 1.1542 38.11 6 0 Median 1.0438 0.88073 6.0306 7 1 Median 1.1773 1.1772 11.64 3 0 Median 1.1298 0.92689 13.018 6 0 Median 2853900000 1349100000 1504800000 317070000 158040000 159030000 114230000 54186000 60047000 665180000 305440000 359740000 1621000000 771600000 849360000 69922000 30426000 39496000 66508000 29406000 37102000 30559 985;2174 32122 159712;159713;159714;159715;159716;159717;159718;159719;159720;159721;159722;159723;159724;159725;159726;159727;159728;159729;159730;159731;159732;159733;159734;159735;159736;159737;159738;159739;159740;159741;159742 160637;160638;160639;160640;160641;160642;160643;160644;160645;160646;160647;160648;160649;160650;160651;160652;160653;160654;160655;160656;160657;160658;160659;160660;160661;160662;160663;160664;160665;160666;160667;160668;160669;160670;160671;160672;160673;160674;160675;160676;160677;160678;160679;160680;160681;160682;160683;160684;160685;160686;160687;160688;160689;160690 160639 54 SLAGVSLMLR PTFGITWRYRLQTVKSLAGVSLMLRLLWAS LQTVKSLAGVSLMLRLLWASLRWDDMAAKA K S L L R L 1 1 0 0 0 0 0 1 0 0 3 0 1 0 0 2 0 0 0 1 0 0 10 0 1045.5954 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1902 1911 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00059887 96.948 By MS/MS By matching 1 1 1.1558 1.1061 12.424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1474 1.2077 NaN 1 0 Median 1.1642 1.0131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16247000 7610700 8635900 0 0 0 0 0 0 15099000 7061200 8037500 1147900 549570 598370 0 0 0 0 0 0 30560 2762 32123 159743;159744 160691;160692 160691 1480 2 SLAKPETDKEQDSEMEK DAMGEKEEAKKTEDKSLAKPETDKEQDSEM AKPETDKEQDSEMEKGGREDMDISKSAEEP K S L E K G 1 0 0 2 0 1 4 0 0 0 1 3 1 0 1 2 1 0 0 0 0 0 17 2 1963.9045 P49321;E9PPR5;E9PNB5 P49321 164 180 NASP Nuclear autoantigenic sperm protein yes no 2;3;4 4.0476E-11 105.28 By matching By MS/MS 2 3 1.2848 1.2202 22.201 5 Median 0.79564 0.83403 5.0412 2 0 Median 1.2926 1.2276 3.0118 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58292000 25159000 33133000 7282300 3960900 3321400 51010000 21198000 29812000 0 0 0 0 0 0 0 0 0 0 0 0 30561 2376 32124 159745;159746;159747;159748;159749 160693;160694;160695;160696;160697;160698 160698 6 SLALETVQNDLR LKDKFRKTRDSLRKKSLALETVQNDLRKTQ RKKSLALETVQNDLRKTQQQTQEMKEMYQN K S L L R K 1 1 1 1 0 1 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1357.7201 Q5CZ79 Q5CZ79 689 700 ANKRD20A8P Ankyrin repeat domain-containing protein 20B yes yes 2 7.8145E-05 93.111 By MS/MS By MS/MS 1 2 1.1445 0.95139 42.044 3 Median NaN NaN NaN 0 0 Median 1.1445 0.95139 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1362 0.96215 59.453 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 148890000 71481000 77413000 0 0 0 106310000 49758000 56551000 0 0 0 42585000 21723000 20862000 0 0 0 0 0 0 30562 3044 32125 159750;159751;159752 160699;160700;160701 160699 3 SLALLGQTFSLASSFR DLALALETTNSLCRKSLALLGQTFSLASSF LALLGQTFSLASSFRQEKILEAVGLQDIAP K S L F R Q 2 1 0 0 0 1 0 1 0 0 4 0 0 2 0 4 1 0 0 0 0 0 16 0 1696.9148 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 493 508 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.00086177 57.019 By MS/MS 1 1.3289 1.42 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3289 1.42 NaN 1 1 Median NaN NaN NaN 0 0 Median 1278400 531750 746680 0 0 0 0 0 0 0 0 0 0 0 0 1278400 531750 746680 0 0 0 30563 1437 32126 159753 160702 160702 1 SLAMEMVLTGDR PGAGGTQRLTRAVGKSLAMEMVLTGDRISA VGKSLAMEMVLTGDRISAQDAKQAGLVSKI K S L D R I 1 1 0 1 0 0 1 1 0 0 2 0 2 0 0 1 1 0 0 1 0 0 12 0 1321.637 P30084 P30084 186 197 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2 2.2232E-07 120.68 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 2 2 1 1.4053 1.1886 42.428 13 Median 1.07 1.0152 59.493 4 1 Median 1.4811 1.2542 4.885 4 1 Median 1.001 0.9571 0.97493 2 0 Median 1.4626 1.1928 19.231 2 0 Median NaN NaN NaN 0 0 Median 3.1111 2.913 NaN 1 0 Median 275360000 145720000 129640000 242460000 131560000 110900000 22408000 8892300 13516000 9295800 4681900 4613800 485860 238980 246880 0 0 0 710550 347360 363190 30564 2186 32127;32128;32129 159754;159755;159756;159757;159758;159759;159760;159761;159762;159763;159764;159765;159766 160703;160704;160705;160706;160707;160708;160709;160710;160711;160712;160713;160714;160715;160716 160713 925;926 14 SLAMLGSSEDNTALSR NHRKELALNTAQFAKSLAMLGSSEDNTALS LAMLGSSEDNTALSRALSQLAEVEEKIEQL K S L S R A 2 1 1 1 0 0 1 1 0 0 3 0 1 0 0 4 1 0 0 0 0 0 16 0 1650.7883 Q13596;H0YK42 Q13596 350 365 SNX1 Sorting nexin-1 yes no 2 1.0359E-08 153.38 By MS/MS By matching 1 1 0.97484 0.88164 3.9971 2 Median 0.95626 0.90691 NaN 1 0 Median 0.99378 0.85707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14420000 7163700 7256000 12993000 6442600 6550300 1426800 721140 705660 0 0 0 0 0 0 0 0 0 0 0 0 30565 2829 32130 159767;159768 160717;160718 160717 2 SLAMTKPDR AGRSNLPDNLKKLFRSLAMTKPDRQLIAQV LKKLFRSLAMTKPDRQLIAQVMLYSQGFRT R S L D R Q 1 1 0 1 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 9 1 1017.5277 Q14204;A0A2R8YFZ7 Q14204 2038 2046 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.025219 57.96 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0359 1.0179 8.7276 4 Median 1.0131 1.0186 NaN 1 0 Median 1.2363 1.1965 NaN 1 0 Median 0.88158 1.0172 NaN 1 0 Median 1.0593 0.98668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3362200 1657400 1704800 511400 255220 256190 1588800 736770 852060 992870 543000 449870 269100 122390 146700 0 0 0 0 0 0 30566 2865 32131 159769;159770;159771;159772 160719;160720 160719 2 SLANPGLMK PTYQSPDLLPKPSHKSLANPGLMKEEPTKP PKPSHKSLANPGLMKEEPTKPGIAKKENGI K S L M K E 1 0 1 0 0 0 0 1 0 0 2 1 1 0 1 1 0 0 0 0 0 0 9 0 929.50044 E7ESJ3;Q9UPS8 E7ESJ3 400 408 ANKRD26 Ankyrin repeat domain-containing protein 26 yes no 2 0.0597 28.423 By MS/MS 1 0.86743 0.84322 NaN 1 Median 0.86743 0.84322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6744800 3711700 3033100 6744800 3711700 3033100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30567 886 32132 159773 160721 160721 1 SLANVILGGYGTTSTAGGK SGAILSYIMCVAMNRSLANVILGGYGTTST VILGGYGTTSTAGGKPMEISGTHTEINLDN R S L G K P 2 0 1 0 0 0 0 5 0 1 2 1 0 0 0 2 3 0 1 1 0 0 19 0 1765.921 Q13423;E9PCX7;A0A590UK15 Q13423 883 901 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 1.102E-57 144.27 By MS/MS By MS/MS 3 2 0.98719 0.92335 20.492 4 Median 0.78901 0.76598 5.1393 2 1 Median 1.243 1.0877 1.8834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10226000 4872600 5353500 6931300 3477200 3454000 3294800 1395400 1899500 0 0 0 0 0 0 0 0 0 0 0 0 30568 2814 32133 159774;159775;159776;159777;159778 160722;160723;160724 160723 3 SLAPSIHGHDYVK FSKTRSKDIFDQLAKSLAPSIHGHDYVKKA AKSLAPSIHGHDYVKKAILCLLLGGVERDL K S L V K K 1 0 0 1 0 0 0 1 2 1 1 1 0 0 1 2 0 0 1 1 0 0 13 0 1422.7256 P25205;J3KQ69;A0A499FHX9 P25205 302 314 MCM3 DNA replication licensing factor MCM3 yes no 3 0.00029908 59.294 By MS/MS By MS/MS By MS/MS 2 1 1 0.89674 0.78343 14.141 4 Median NaN NaN NaN 0 0 Median 0.89674 0.78343 7.1109 2 2 Median 0.65848 0.72283 NaN 1 0 Median 1.1402 0.98892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22333000 11337000 10996000 0 0 0 13066000 6180300 6885400 6913300 4041300 2871900 2354400 1115700 1238700 0 0 0 0 0 0 30569 2129 32134 159779;159780;159781;159782 160725;160726;160727;160728;160729;160730 160730 6 SLAPSIHGHDYVKK FSKTRSKDIFDQLAKSLAPSIHGHDYVKKA KSLAPSIHGHDYVKKAILCLLLGGVERDLE K S L K K A 1 0 0 1 0 0 0 1 2 1 1 2 0 0 1 2 0 0 1 1 0 0 14 1 1550.8205 P25205;J3KQ69;A0A499FHX9 P25205 302 315 MCM3 DNA replication licensing factor MCM3 yes no 3 0.00013379 67.115 By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 0.96528 0.96829 14.72 6 Median 0.84363 0.87691 18.316 3 0 Median 1.1045 1.0692 NaN 1 0 Median 0.75588 0.8646 NaN 1 0 Median 1.1264 1.1004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18991000 9369800 9620900 8571700 4282500 4289200 6015200 2811900 3203300 3374000 1813500 1560400 1029800 461830 567940 0 0 0 0 0 0 30570 2129 32135 159783;159784;159785;159786;159787;159788 160731;160732;160733;160734;160735 160734 5 SLAPSLLDR LTVILLLICTCAYIRSLAPSLLDRNKTGLL TCAYIRSLAPSLLDRNKTGLLGIFWKCARI R S L D R N 1 1 0 1 0 0 0 0 0 0 3 0 0 0 1 2 0 0 0 0 0 0 9 0 970.54475 Q8TBQ9 Q8TBQ9 26 34 TMEM167A Protein kish-A yes yes 2 0.0017097 78.516 By MS/MS By MS/MS By matching By matching By matching By matching 1 3 1 1 1 3 1.1057 1.0457 15.786 10 Median 1.1343 1.1039 NaN 1 0 Median 1.2667 1.0747 9.2287 3 1 Median 1.0778 1.0774 NaN 1 0 Median 0.74084 0.99949 NaN 1 0 Median 0.75146 0.76315 NaN 1 0 Median 1.0354 0.84289 20.175 3 0 Median 27749000 12861000 14888000 7465200 3497300 3968000 14259000 6492200 7767100 2779600 1307000 1472600 172670 98764 73910 1059500 543050 516450 2012700 922660 1090100 30571 3461 32136 159789;159790;159791;159792;159793;159794;159795;159796;159797;159798 160736;160737;160738;160739;160740 160737 5 SLAPYAQDVQGK QLQTKIEENVEELRRSLAPYAQDVQGKLNH LRRSLAPYAQDVQGKLNHQLEGLAFQMKKH R S L G K L 2 0 0 1 0 2 0 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 12 0 1275.6459 CON__Q32PJ2 CON__Q32PJ2 222 233 yes yes 2 0.0040905 70.399 By MS/MS By MS/MS 1 2 0.25692 0.23476 68.93 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45382 0.3822 NaN 1 1 Median 0.14545 0.14419 NaN 1 1 Median NaN NaN NaN 0 0 Median 4080300 3462500 617830 0 0 0 0 0 0 0 0 0 911050 630760 280280 3169300 2831700 337550 0 0 0 + 30572 775 32137 159799;159800;159801 160741;160742;160743 160742 3 SLAQAEAEKQKEEAER ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE LAQAEAEKQKEEAEREARRRGKAEEQAVRQ K S L E R E 4 1 0 0 0 2 5 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 16 2 1815.8963 Q15149 Q15149 1793 1808 PLEC Plectin yes yes 3;4 1.7597E-07 95.347 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 2 1.1965 1.3696 27.482 11 Median 1.1965 1.3021 17.022 3 0 Plateau 1.3381 1.4256 4.5938 2 0 Median 1.0427 1.3837 48.72 3 0 Plateau 1.3928 1.4825 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4264 1.3691 14.673 2 0 Median 48202000 21996000 26205000 20352000 9484300 10868000 14396000 6118300 8277300 9215800 4700900 4514900 710990 278420 432570 0 0 0 3527300 1414500 2112700 30573 2933 32138 159802;159803;159804;159805;159806;159807;159808;159809;159810;159811;159812 160744;160745;160746;160747;160748;160749;160750;160751;160752;160753;160754;160755;160756;160757;160758 160745 15 SLAQEALR VLKRMTIIGVILSFRSLAQEALRDVLSYHI GVILSFRSLAQEALRDVLSYHIPFLVSSIE R S L L R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 886.48723 Q9Y2A7 Q9Y2A7 918 925 NCKAP1 Nck-associated protein 1 yes yes 2 0.0034702 94.262 By MS/MS By MS/MS 1 2 1.2612 1.0723 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2612 1.0723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3842800 1812300 2030500 0 0 0 0 0 0 0 0 0 3842800 1812300 2030500 0 0 0 0 0 0 30574 4383 32139 159813;159814;159815 160759;160760 160760 2 SLAQFSYLEPGSIR GWEAETFALEHLEMRSLAQFSYLEPGSIRH RSLAQFSYLEPGSIRHIYLYHHAQAHKALF R S L I R H 1 1 0 0 0 1 1 1 0 1 2 0 0 1 1 3 0 0 1 0 0 0 14 0 1566.8042 Q07864;F5H1D6 Q07864 1472 1485 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.0011 65.5 By MS/MS 2 1.1461 1.273 3.6127 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1461 1.273 3.6127 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4692600 2125600 2567000 0 0 0 0 0 0 4692600 2125600 2567000 0 0 0 0 0 0 0 0 0 30575 1020 32140 159816;159817 160761;160762 160761 2 SLASDITDEQKK VFNYGVETHEAYKQRSLASDITDEQKKVRE KQRSLASDITDEQKKVREADLVIFQFPLYW R S L K K V 1 0 0 2 0 1 1 0 0 1 1 2 0 0 0 2 1 0 0 0 0 0 12 1 1333.6725 Q5TD05;Q5TD07;P16083 Q5TD05 80 91 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] yes no 2;3 0.00088255 66.595 By MS/MS By matching 3 1 1.2912 1.3137 17.066 3 Plateau 1.2832 1.3066 2.7177 2 0 Median NaN NaN NaN 0 0 Median 0.91433 0.97406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7306300 3273900 4032400 6326000 2731000 3595000 0 0 0 980310 542940 437370 0 0 0 0 0 0 0 0 0 30576 2023 32141 159818;159819;159820;159821 160763;160764;160765;160766 160764 4 SLASVSYAAVDFFR STMDLVKSKSMDAIRSLASVSYAAVDFFRP RSLASVSYAAVDFFRPSAQRLIEEKGAVDA R S L F R P 3 1 0 1 0 0 0 0 0 0 1 0 0 2 0 3 0 0 1 2 0 0 14 0 1531.7671 Q9BQ39 Q9BQ39 533 546 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.010512 33.866 By MS/MS 1 0.92684 0.95523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92684 0.95523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 677390 358250 319140 0 0 0 0 0 0 677390 358250 319140 0 0 0 0 0 0 0 0 0 30577 3781 32142 159822 160767;160768 160767 2 SLASVSYAAVDFFRPSAQR STMDLVKSKSMDAIRSLASVSYAAVDFFRP VSYAAVDFFRPSAQRLIEEKGAVDALAAAL R S L Q R L 4 2 0 1 0 1 0 0 0 0 1 0 0 2 1 4 0 0 1 2 0 0 19 1 2071.0487 Q9BQ39 Q9BQ39 533 551 DDX50 ATP-dependent RNA helicase DDX50 yes yes 3 0.0015073 26.808 By MS/MS 1 0.91918 0.99871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91918 0.99871 NaN 1 0 Median NaN NaN NaN 0 0 Median 5210600 2710300 2500300 0 0 0 0 0 0 0 0 0 0 0 0 5210600 2710300 2500300 0 0 0 30578 3781 32143 159823 160769;160770 160770 2 SLATMDSPPHQK FTPELQPKASQSRKRSLATMDSPPHQKQPQ RKRSLATMDSPPHQKQPQRGEVSQKTVIIK R S L Q K Q 1 0 0 1 0 1 0 0 1 0 1 1 1 0 2 2 1 0 0 0 0 0 12 0 1310.6289 Q14676 Q14676 1814 1825 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 0.00095468 45.915 By MS/MS By matching 3 1 0.65819 0.73118 17.7 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66914 0.74433 17.449 3 0 Plateau 0.90744 0.81607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3945800 2293500 1652300 0 0 0 0 0 0 3626200 2121900 1504300 319660 171620 148030 0 0 0 0 0 0 30579 2887 32144 159824;159825;159826;159827 160771;160772;160773 160772 3 SLATTRPTVNADDLLK DKLLEPVVCMSDMLRSLATTRPTVNADDLL LATTRPTVNADDLLKVKKFSEDFGQES___ R S L L K V 2 1 1 2 0 0 0 0 0 0 3 1 0 0 1 1 3 0 0 1 0 0 16 1 1713.9261 Q9UN37 Q9UN37 410 425 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 3 0.036673 24.481 By MS/MS 1 1.1143 1.1315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1143 1.1315 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18979000 7649400 11329000 0 0 0 0 0 0 18979000 7649400 11329000 0 0 0 0 0 0 0 0 0 30580 4339 32145 159828 160774 160774 1 SLAVSGLGVIGR SLECTLILTEGDSAKSLAVSGLGVIGRDRY SAKSLAVSGLGVIGRDRYGVFPLRGKILNV K S L G R D 1 1 0 0 0 0 0 3 0 1 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1127.6663 Q02880;E9PCY5 Q02880 488 499 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 5.2871E-06 99.815 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 3 3 1.1323 1.1668 39.009 14 Median 0.40923 0.39945 NaN 1 0 Median 0.98177 0.84183 55.167 2 0 Median 0.97158 1.059 13.351 3 0 Median 1.8411 1.6118 21.355 2 0 Median 1.131 1.1366 2.8774 3 0 Median 1.5845 1.3257 9.006 3 0 Median 67958000 34026000 33932000 8239200 6005600 2233700 1193300 582910 610420 30173000 15206000 14967000 1943600 706910 1236700 24932000 10939000 13994000 1476700 586400 890300 30581 2704 32146 159829;159830;159831;159832;159833;159834;159835;159836;159837;159838;159839;159840;159841;159842 160775;160776;160777;160778;160779;160780;160781;160782;160783;160784 160779 10 SLAYLTAATHGLDEEAESLK DVSERVRILKNCGQKSLAYLTAATHGLDEE TAATHGLDEEAESLKETFDPEKETIPDIDP K S L L K E 4 0 0 1 0 0 3 1 1 0 4 1 0 0 0 2 2 0 1 0 0 0 20 0 2118.0481 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITI7 P53621 756 775 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 3 0.05718 8.1875 By matching By MS/MS 1 1 1.0705 0.99819 14.738 2 Median 0.91019 0.8994 NaN 1 0 Median 1.259 1.1078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3607100 1730700 1876400 1743200 884740 858430 1864000 845990 1018000 0 0 0 0 0 0 0 0 0 0 0 0 30582 2473 32147 159843;159844 160785;160786 160785 2 SLCIGATYDVTDSR AFIIRSFGGEVSWDKSLCIGATYDVTDSRI KSLCIGATYDVTDSRITHQIVDRPGQQTSV K S L S R I 1 1 0 2 1 0 0 1 0 1 1 0 0 0 0 2 2 0 1 1 0 0 14 0 1556.7141 B5MCF9;O00541;B3KXD6 B5MCF9 342 355 PES1 Pescadillo homolog yes no 2 0.0020186 45.359 By MS/MS 1 1.6898 1.7912 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6898 1.7912 NaN 1 0 Median NaN NaN NaN 0 0 Median 2573200 1268200 1305000 0 0 0 0 0 0 0 0 0 0 0 0 2573200 1268200 1305000 0 0 0 30583 618 32148 159845 160787 160787 1 SLDAPSWPGVYR LSTNGTAQTPSASRKSLDAPSWPGVYRLSM SRKSLDAPSWPGVYRLSMSLMEQLLKTLRY K S L Y R L 1 1 0 1 0 0 0 1 0 0 1 0 0 0 2 2 0 1 1 1 0 0 12 0 1346.6619 Q5SRE5 Q5SRE5 1387 1398 NUP188 Nucleoporin NUP188 homolog yes yes 2 5.6052E-05 94.692 By MS/MS By MS/MS 2 1 0.91202 0.88955 8.4708 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85905 0.93716 7.3731 2 0 Median 0.95376 0.83482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10670000 5654200 5015300 0 0 0 0 0 0 10175000 5431100 4744100 494310 223120 271190 0 0 0 0 0 0 30584 3074 32149 159846;159847;159848 160788;160789;160790;160791 160790 4 SLDDDLDGVPLDATEDSKKNEPIFK IDATPIDDLDGVPIKSLDDDLDGVPLDATE LDATEDSKKNEPIFKVAPSKWEAVDESELE K S L F K V 1 0 1 6 0 0 2 1 0 1 3 3 0 1 2 2 1 0 0 1 0 0 25 2 2760.3341 O15042;E7ET15;H7C4V2 O15042 731 755 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3;4 0.00065835 36.9 By MS/MS 2 0.60749 0.72999 4.8682 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60749 0.72999 4.8682 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12943000 8396900 4545700 0 0 0 0 0 0 12943000 8396900 4545700 0 0 0 0 0 0 0 0 0 30585 1515 32150 159849;159850 160792;160793 160792 2 SLDDEVNAFK KLHQDEKKKLEDKKKSLDDEVNAFKQRKTA EDKKKSLDDEVNAFKQRKTAAELLQSQGSQ K S L F K Q 1 0 1 2 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1136.535 B1AMS2;Q14141 B1AMS2 388 397 SEPT6 Septin-6 yes no 2 0.00040021 77.732 By MS/MS By MS/MS 1 2 1.0844 0.93005 39.53 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62894 0.6047 NaN 1 0 Median 1.27 1.1129 25.386 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32349000 16444000 15905000 0 0 0 0 0 0 21381000 11746000 9635400 10968000 4698600 6269400 0 0 0 0 0 0 30586 573 32151 159851;159852;159853 160794;160795 160794 2 SLDDFQAWLGR EESLGEARRLQDFLRSLDDFQAWLGRTQTA DFLRSLDDFQAWLGRTQTAVASEEGPATLP R S L G R T 1 1 0 2 0 1 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 11 0 1306.6306 O15020 O15020 1073 1083 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00037796 88.948 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.78666 0.76535 41.854 5 Median NaN NaN NaN 0 0 Median 0.78666 0.65366 NaN 1 1 Median 0.87545 0.92748 27.173 2 0 Median 1.5812 1.3842 NaN 1 0 Median 0.44391 0.48719 NaN 1 0 Median NaN NaN NaN 0 0 Median 6899800 3713900 3185900 0 0 0 1419100 828800 590320 4434700 2285400 2149300 316100 120850 195250 729930 478830 251090 0 0 0 30587 1512 32152 159854;159855;159856;159857;159858 160796;160797 160796 2 SLDEMEK AQHGTFEYEYSQRWKSLDEMEKQQREQVEK YEYSQRWKSLDEMEKQQREQVEKNMKDAKD K S L E K Q 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 7 0 850.37423 P23246;H0Y9K7 P23246 496 502 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.014432 74.415 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 2 2 1.2981 1.1376 24.82 12 Median 1.3824 1.3928 11.099 2 0 Median 1.2193 1.0656 NaN 1 0 Median 1.0578 1.1145 0.1498 2 0 Median 1.4229 1.2229 9.4131 3 0 Median 1.4073 1.5577 64.09 2 0 Median 1.277 1.0587 10.052 2 0 Median 93220000 42980000 50240000 1838900 885780 953100 5808100 2573700 3234300 54781000 26613000 28168000 22821000 9446900 13374000 5183600 2326700 2856900 2788300 1134100 1654200 30588 2107 32153 159859;159860;159861;159862;159863;159864;159865;159866;159867;159868;159869;159870 160798;160799;160800;160801;160802;160803;160804;160805;160806;160807;160808;160809;160810;160811;160812;160813 160807 16 SLDEMEKQQR AQHGTFEYEYSQRWKSLDEMEKQQREQVEK SQRWKSLDEMEKQQREQVEKNMKDAKDKLE K S L Q R E 0 1 0 1 0 2 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 10 1 1262.5925 P23246;H0Y9K7 P23246 496 505 SFPQ Splicing factor, proline- and glutamine-rich yes no 2 0.015116 57.598 By MS/MS 1 1.3493 1.4985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3493 1.4985 NaN 1 0 Median NaN NaN NaN 0 0 Median 1272500 509670 762810 0 0 0 0 0 0 0 0 0 0 0 0 1272500 509670 762810 0 0 0 30589 2107 32154 159871 160814 160814 1 SLDFKEQVAEETSGDSK SLAKTIKKETDVFWKSLDFKEQVAEETSGD DFKEQVAEETSGDSKARNLADDSSENKVEN K S L S K A 1 0 0 2 0 1 3 1 0 0 1 2 0 1 0 3 1 0 0 1 0 0 17 1 1868.864 P35251 P35251 552 568 RFC1 Replication factor C subunit 1 yes yes 2 4.2337E-07 77.912 By MS/MS 1 0.83935 0.96494 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83935 0.96494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5953100 3359000 2594100 0 0 0 0 0 0 5953100 3359000 2594100 0 0 0 0 0 0 0 0 0 30590 2239 32155 159872 160815 160815 1 SLDFYTR FLLQQTMLRVKDPKKSLDFYTRVLGMTLIQ LRVKDPKKSLDFYTRVLGMTLIQKCDFPIM K S L T R V 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 7 0 900.43413 Q04760 Q04760 45 51 GLO1 Lactoylglutathione lyase yes yes 2 0.0013251 132.09 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 1 2 2 1.3378 1.1279 9.8342 13 Median 1.123 1.0818 2.9573 4 0 Median 1.4289 1.2042 3.6838 4 0 Median 1.047 1.0057 NaN 1 0 Median 1.3731 1.116 6.0988 2 0 Median 1.2108 1.2103 25.879 2 0 Median NaN NaN NaN 0 0 Median 257730000 115490000 142240000 203540000 93509000 110030000 31293000 12244000 19049000 18006000 7832100 10174000 1545900 633360 912560 3340700 1272300 2068400 0 0 0 30591 2712 32156 159873;159874;159875;159876;159877;159878;159879;159880;159881;159882;159883;159884;159885 160816;160817;160818;160819;160820;160821;160822;160823;160824;160825;160826;160827 160817 12 SLDGAPIGVMDQSLMK PAPHFERTSSKRVSRSLDGAPIGVMDQSLM LDGAPIGVMDQSLMKDFPGAAGEISAYGPG R S L M K D 1 0 0 2 0 1 0 2 0 1 2 1 2 0 1 2 0 0 0 1 0 0 16 0 1660.8164 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3;H0Y5B0 O43491 550 565 EPB41L2 Band 4.1-like protein 2 yes no 2 0.00022427 59.57 By MS/MS By MS/MS 2 1 1.0582 1.0279 39.965 3 Median 1.0739 1.0441 2.2042 2 2 Median NaN NaN NaN 0 0 Median 0.48457 0.52281 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19391000 9180600 10211000 13330000 5745400 7585000 0 0 0 6060900 3435200 2625700 0 0 0 0 0 0 0 0 0 30592 1573 32157 159886;159887;159888 160828;160829;160830 160829 3 SLDGASVNENHEIYMK PYFERSSSKRYTMSRSLDGASVNENHEIYM LDGASVNENHEIYMKDSMSAAEVGTGQYAT R S L M K D 1 0 2 1 0 0 2 1 1 1 1 1 1 0 0 2 0 0 1 1 0 0 16 0 1805.8254 A0A0A0MRA8;A0A0A0MSA4;A8K968;A0A1B0GTF8;A0A0J9YW26;J3KT37 A0A0A0MRA8 443 458 EPB41L3 yes no 3 0.005877 25.59 By MS/MS By matching 1 1 1.1673 1.0764 8.2887 2 Median 1.1625 1.1414 NaN 1 0 Median 1.1721 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5404500 2521300 2883200 4033900 2011600 2022400 1370500 509740 860800 0 0 0 0 0 0 0 0 0 0 0 0 30593 156 32158 159889;159890 160831 160831 1 SLDGVTNDR ______________________________ NIPKAKSLDGVTNDRTASQGQWGRAWEVDW K S L D R T 0 1 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 975.46214 Q9UBM7;E9PM00;E9PJ54;E9PRL8;E9PQ71;E9PIP9 Q9UBM7 14 22 DHCR7 7-dehydrocholesterol reductase yes no 2 0.021425 62.546 By MS/MS By MS/MS 1 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30594 4241 32159 159891;159892;159893 160832;160833;160834 160834 3 SLDHQGINFK FNKVWREQNEKYYLKSLDHQGINFKQNDTK KYYLKSLDHQGINFKQNDTKVLRSKSLLNE K S L F K Q 0 0 1 1 0 1 0 1 1 1 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1157.5829 Q96ST3 Q96ST3 728 737 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00076957 82.645 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30595 3737 32160 159894 160835 160835 1 SLDIQVPNFPADETK LESLRVIITNFPAAKSLDIQVPNFPADETK SLDIQVPNFPADETKGFHQVPFAPIVFIER K S L T K G 1 0 1 2 0 1 1 0 0 1 1 1 0 1 2 1 1 0 0 1 0 0 15 0 1672.8308 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 P47897 587 601 QARS Glutamine--tRNA ligase yes no 2 0.00015897 68.069 By MS/MS By MS/MS 1 1 0.80082 0.7185 8.8722 2 Median 0.73641 0.67481 NaN 1 1 Median 0.87087 0.76502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11269000 6020600 5248600 7959400 4271500 3687900 3309800 1749100 1560700 0 0 0 0 0 0 0 0 0 0 0 0 30596 2356 32161 159895;159896 160836;160837;160838;160839;160840 160836 5 SLDLDISK EVNEAFAPQYLAVERSLDLDISKTNVNGGA QYLAVERSLDLDISKTNVNGGAIALGHPLG R S L S K T 0 0 0 2 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 0 889.47566 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 330 337 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.013722 52.482 By MS/MS By matching 1 1 1.3751 1.2273 19.206 2 Median 1.1483 1.0714 NaN 1 0 Median 1.6468 1.4058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9247200 3745600 5501600 8020700 3298700 4722000 1226600 446900 779650 0 0 0 0 0 0 0 0 0 0 0 0 30597 220 32162 159897;159898 160841 160841 1 SLDLDSIIAEVK QISETNVILSMDNNRSLDLDSIIAEVKAQY NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1301.7078 P04264;CON__P04264 P04264 344 355 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 3.7985E-08 128.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 3 5 1 0.006398 0.0057059 147.47 17 Median 0.004236 0.003892 117.66 3 3 Median 0.023634 0.020696 243.94 3 3 Median 0.0097964 0.010807 64.645 5 5 Median 0.0051379 0.0043795 32.626 2 2 Median 0.004277 0.0043089 185.01 4 4 Median NaN NaN NaN 0 0 Median 802200000 799230000 2976700 265990000 265730000 263680 72543000 72202000 340940 81155000 80053000 1102400 21211000 21184000 26337 360100000 358860000 1243400 1200600 1200600 0 + 30598 1848 32163 159899;159900;159901;159902;159903;159904;159905;159906;159907;159908;159909;159910;159911;159912;159913;159914;159915;159916;159917;159918;159919;159920 160842;160843;160844;160845;160846;160847;160848;160849;160850;160851;160852;160853;160854;160855;160856;160857;160858;160859;160860;160861;160862;160863;160864;160865 160853 24 SLDLFNCEVTNLNDYRENVFK DLSTIEPLKKLENLKSLDLFNCEVTNLNDY CEVTNLNDYRENVFKLLPQLTYLDGYDRDD K S L F K L 0 1 4 2 1 0 2 0 0 0 3 1 0 2 0 1 1 0 1 2 0 0 21 1 2589.217 P39687;H0YN26 P39687 117 137 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 3 0.067749 7.8971 By MS/MS 2 1.2466 1.1494 12.812 2 Median NaN NaN NaN 0 0 Median 1.2466 1.1494 12.812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3937700 1736400 2201300 0 0 0 3937700 1736400 2201300 0 0 0 0 0 0 0 0 0 0 0 0 30599 2282 32164 159921;159922 160866 160866 1 SLDLIESLLR KAPPEDDNREIATWKSLDLIESLLRLAEVG IATWKSLDLIESLLRLAEVGQYEQVKQLFS K S L L R L 0 1 0 1 0 0 1 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1157.6656 A5YKK6 A5YKK6 450 459 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.0061875 49.418 By matching By MS/MS By matching By matching 3 1 1 1 1.184 1.0977 26.523 6 Median NaN NaN NaN 0 0 Median 1.3406 1.1829 37.448 3 0 Median 1.0216 1.1383 NaN 1 0 Median 1.1218 0.97279 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2496 1.0586 NaN 1 0 Median 3109000 1514600 1594300 0 0 0 2082400 1007900 1074500 827800 418140 409660 114350 55836 58514 0 0 0 84434 32796 51638 30600 503 32165 159923;159924;159925;159926;159927;159928 160867 160867 1 SLDLVTMK HACLYFIAPTGHSLKSLDLVTMKKLDSKVN PTGHSLKSLDLVTMKKLDSKVNIIPIIAKA K S L M K K 0 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 1 0 0 8 0 905.4892 D6RGI3;D6RER5;Q9NVA2;D6RDU5;B1AMS2;Q14141;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599;C9JV02 D6RGI3 163 170 SEPT11;SEPT6;SEPT8 Septin-11;Septin-6;Septin-8 no no 2 0.0034121 97.798 By matching By MS/MS By MS/MS 1 2 2 1.3724 1.2819 22.317 5 Median 1.5675 1.5087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5294 1.4922 21.48 2 0 Median 1.248 1.0708 13.377 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55123000 21758000 33365000 2485900 858580 1627400 0 0 0 42626000 16636000 25991000 10011000 4264300 5746600 0 0 0 0 0 0 30601 822;573;118 32166;32167 159929;159930;159931;159932;159933 160868;160869;160870;160871;160872;160873;160874;160875 160871 64 8 SLDMDSIIAEVK QISDTSVVLSMDNSRSLDMDSIIAEVKAQY NSRSLDMDSIIAEVKAQYEDIANRSRAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 1 1 1 0 0 2 0 0 0 1 0 0 12 0 1319.6643 P05787;CON__P05787;F8VUG2;CON__H-INV:HIT000292931 P05787 253 264 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.281E-17 135.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 8 12 8 9 20 1.2656 1.1137 27.128 60 Median 1.3735 1.3675 36.725 5 1 Median 1.4754 1.2468 20.608 8 0 Median 1.1973 1.1649 29.019 11 2 Median 1.1673 0.9824 19.593 7 0 Median 1.4063 1.398 18.105 9 0 Median 1.1996 0.98503 17.983 20 0 Median 2389100000 1053300000 1335800000 98963000 43477000 55485000 343760000 135040000 208720000 424380000 191580000 232800000 66474000 32751000 33723000 267870000 108120000 159750000 1187700000 542320000 645350000 + 30602 750 32168;32169 159934;159935;159936;159937;159938;159939;159940;159941;159942;159943;159944;159945;159946;159947;159948;159949;159950;159951;159952;159953;159954;159955;159956;159957;159958;159959;159960;159961;159962;159963;159964;159965;159966;159967;159968;159969;159970;159971;159972;159973;159974;159975;159976;159977;159978;159979;159980;159981;159982;159983;159984;159985;159986;159987;159988;159989;159990;159991;159992;159993;159994;159995 160876;160877;160878;160879;160880;160881;160882;160883;160884;160885;160886;160887;160888;160889;160890;160891;160892;160893;160894;160895;160896;160897;160898;160899;160900;160901;160902;160903;160904;160905;160906;160907;160908;160909;160910;160911;160912;160913;160914;160915;160916;160917;160918;160919;160920;160921;160922;160923;160924;160925;160926;160927;160928;160929;160930;160931;160932;160933;160934;160935;160936;160937;160938;160939;160940;160941;160942 160917 274 67 SLDNFFAK ______________________________ MAETEERSLDNFFAKRDKKKKKERSNRAAS R S L A K R 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 0 8 0 940.46543 Q9UKY7 Q9UKY7 8 15 CDV3 Protein CDV3 homolog yes yes 2 0.010382 58.981 By MS/MS By matching By matching By matching 2 2 1 1 1.274 1.1418 17.278 6 Median 1.1973 1.1239 1.1528 2 0 Median 1.1738 1.0122 18.122 2 0 Median 1.3497 1.3204 NaN 1 0 Median 1.7817 1.4838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11198000 5260800 5937600 9757300 4594100 5163300 261640 105790 155850 980380 500610 479770 199070 60393 138680 0 0 0 0 0 0 30603 4318 32170 159996;159997;159998;159999;160000;160001 160943;160944 160944 2 SLDNNYSTPNER DREEIQMSNMGSNTKSLDNNYSTPNERGDH NTKSLDNNYSTPNERGDHNRTLDRSGDLGD K S L E R G 0 1 3 1 0 0 1 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 12 0 1408.6219 C9JZR2;O60716;H0YC95 C9JZR2 899 910 CTNND1 Catenin delta-1 yes no 2 0.041008 45.161 By MS/MS 1 0.59051 0.62863 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59051 0.62863 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 937490 633020 304470 0 0 0 0 0 0 937490 633020 304470 0 0 0 0 0 0 0 0 0 30604 732 32171 160002 160945 160945 1 SLDPADERDDVLAKR DRMTEDALRLNLLKRSLDPADERDDVLAKR SLDPADERDDVLAKRLKMEGHEAMERLKML R S L K R L 2 2 0 4 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 15 2 1698.8537 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 17 31 GATAD2B Transcriptional repressor p66-beta yes no 3 0.054757 13.063 By MS/MS 1 1.0559 1.2352 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0559 1.2352 NaN 1 0 Median NaN NaN NaN 0 0 Median 7872700 4474600 3398100 0 0 0 0 0 0 0 0 0 0 0 0 7872700 4474600 3398100 0 0 0 30605 311 32172 160003 160946 160946 1 SLDPENSETELER ILGTLNKSTSSRSLKSLDPENSETELERIL LKSLDPENSETELERILRRRKVTAEADSSS K S L E R I 0 1 1 1 0 0 4 0 0 0 2 0 0 0 1 2 1 0 0 0 0 0 13 0 1517.6845 A0MZ66 A0MZ66 467 479 KIAA1598 Shootin-1 yes yes 2 0.0006799 67.776 By MS/MS 1 0.75294 0.73877 NaN 1 Median 0.75294 0.73877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2533600 1387100 1146500 2533600 1387100 1146500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30606 490 32173 160004 160947;160948 160947 2 SLDPFKPFIIFSNR CYEGWVLEPDGESCRSLDPFKPFIIFSNRH RSLDPFKPFIIFSNRHEIRRIDLHKGDYSV R S L N R H 0 1 1 1 0 0 0 0 0 2 1 1 0 3 2 2 0 0 0 0 0 0 14 1 1679.9035 Q07954 Q07954 1263 1276 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 0.0061005 27.969 By MS/MS By matching 2 1 0.52559 0.54069 22.429 3 Median 0.47287 0.48541 15.255 2 0 Median 0.69578 0.68238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5665700 3695900 1969800 5019100 3326800 1692300 646630 369110 277510 0 0 0 0 0 0 0 0 0 0 0 0 30607 2733 32174 160005;160006;160007 160949;160950 160950 2 SLDQAINDK TSKEERDKWIKKELKSLDQAINDKKRQIAA IKKELKSLDQAINDKKRQIAAIHKDLEDTE K S L D K K 1 0 1 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1002.4982 Q9UQE7 Q9UQE7 401 409 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.032115 56.258 By MS/MS By MS/MS By MS/MS 1 3 1 0.79252 0.70811 83.421 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40665 0.39258 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5445 1.2773 NaN 1 0 Median 1794700 928020 866710 0 0 0 0 0 0 0 0 0 390910 250800 140110 0 0 0 1403800 677220 726610 30608 4362 32175 160008;160009;160010;160011;160012 160951;160952;160953;160954 160951 4 SLDQAINDKKR TSKEERDKWIKKELKSLDQAINDKKRQIAA KELKSLDQAINDKKRQIAAIHKDLEDTEAN K S L K R Q 1 1 1 2 0 1 0 0 0 1 1 2 0 0 0 1 0 0 0 0 0 0 11 2 1286.6943 Q9UQE7 Q9UQE7 401 411 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.00068587 55.401 By MS/MS By MS/MS 1 2 1.1275 1.3287 17.04 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88526 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1493 1.3528 2.5457 2 0 Median NaN NaN NaN 0 0 Median 3296500 1799100 1497500 0 0 0 0 0 0 709690 344530 365160 0 0 0 2586800 1454500 1132300 0 0 0 30609 4362 32176 160013;160014;160015 160955;160956;160957;160958 160957 4 SLDQDPVVR VMEWMNNVMNAQAKKSLDQDPVVRAQEIKT NAQAKKSLDQDPVVRAQEIKTKIKELNNTC K S L V R A 0 1 0 2 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 1027.5298 Q92598;A0A0A0MSM0;Q5TBM3 Q92598 773 781 HSPH1 Heat shock protein 105 kDa yes no 2 0.00098548 86.953 By MS/MS 2 0.77844 0.72127 11.611 2 Median NaN NaN NaN 0 0 Median 0.77844 0.72127 11.611 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9097700 4935800 4161900 0 0 0 9097700 4935800 4161900 0 0 0 0 0 0 0 0 0 0 0 0 30610 3541 32177 160016;160017 160959;160960 160960 2 SLDSDESEDEEDDYQQKR EGGDGAAGDPKKEKKSLDSDESEDEEDDYQ SDESEDEEDDYQQKRKGVEGLIDIENPNRV K S L K R K 0 1 0 5 0 2 4 0 0 0 1 1 0 0 0 3 0 0 1 0 0 0 18 1 2186.8724 Q13442 Q13442 57 74 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 3 1.3035E-06 71.085 By MS/MS 1 0.9923 0.92715 NaN 1 Median NaN NaN NaN 0 0 Median 0.9923 0.92715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1925300 889880 1035400 0 0 0 1925300 889880 1035400 0 0 0 0 0 0 0 0 0 0 0 0 30611 2818 32178 160018 160961 160961 1 SLDSFLLSPEAAVGLLK DHMAQHFNGLLEIARSLDSFLLSPEAAVGL DSFLLSPEAAVGLLKGTALVLARLPLDKIT R S L L K G 2 0 0 1 0 0 1 1 0 0 5 1 0 1 1 3 0 0 0 1 0 0 17 0 1758.9768 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 547 563 TNPO3 Transportin-3 yes no 2 3.1062E-05 52.928 By MS/MS By matching By matching By matching 2 1 1 1 0.95528 0.93813 17.594 5 Median 0.93792 0.91459 4.8379 2 0 Median 1.0384 0.93813 NaN 1 0 Median 0.69181 0.71382 NaN 1 0 Median 1.3338 1.1672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3801600 1958300 1843200 2898900 1519300 1379500 711970 338600 373370 121020 74786 46232 69708 25611 44097 0 0 0 0 0 0 30612 4461 32179 160019;160020;160021;160022;160023 160962 160962 1 SLDTHVTK GEDNHWICKPWNLARSLDTHVTKSLHSIIR KPWNLARSLDTHVTKSLHSIIRHRESTPKV R S L T K S 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 1 2 0 0 1 0 0 8 0 899.47125 Q14166 Q14166 426 433 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.061196 32.355 By MS/MS By matching 1 1 1.0512 1.018 10.953 2 Median NaN NaN NaN 0 0 Median 1.255 1.1 NaN 1 0 Median 0.88043 0.94214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 974410 437920 536490 0 0 0 868660 379900 488750 105750 58014 47736 0 0 0 0 0 0 0 0 0 30613 2861 32180 160024;160025 160963 160963 1 SLDWQIDVDLLNK VRDNNMAPYYEALCKSLDWQIDVDLLNKMK CKSLDWQIDVDLLNKMKKANEDELKRLDEE K S L N K M 0 0 1 3 0 1 0 0 0 1 3 1 0 0 0 1 0 1 0 1 0 0 13 0 1557.8039 Q15008;C9J0E9;C9J7B7 Q15008 60 72 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 2 0.01125 52.79 By MS/MS 1 1.159 0.99018 NaN 1 Median NaN NaN NaN 0 0 Median 1.159 0.99018 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1284200 565190 719010 0 0 0 1284200 565190 719010 0 0 0 0 0 0 0 0 0 0 0 0 30614 2911 32181 160026 160964 160964 1 SLEADPNSGQSWYFLGR DKATKESYAIQYLQKSLEADPNSGQSWYFL EADPNSGQSWYFLGRCYSSIGKVQDAFISY K S L G R C 1 1 1 1 0 1 1 2 0 0 2 0 0 1 1 3 0 1 1 0 0 0 17 0 1925.8908 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248 O15550 276 292 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 2 5.9833E-07 87.001 By MS/MS 1 0.89437 0.98202 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89437 0.98202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3077100 1699000 1378200 0 0 0 0 0 0 3077100 1699000 1378200 0 0 0 0 0 0 0 0 0 30615 111 32182 160027 160965;160966 160965 2 SLEAEGFQVTYLPVQK ITTQTEHKCVLDSCRSLEAEGFQVTYLPVQ LEAEGFQVTYLPVQKSGIIDLKELEAAIQP R S L Q K S 1 0 0 0 0 2 2 1 0 0 2 1 0 1 1 1 1 0 1 2 0 0 16 0 1807.9356 Q9Y697;F2Z2E7 Q9Y697 165 180 NFS1 Cysteine desulfurase, mitochondrial yes no 2 0.0060926 32.008 By MS/MS 1 0.8052 0.7747 NaN 1 Median 0.8052 0.7747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2524700 1260600 1264100 2524700 1260600 1264100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30616 4484 32183 160028 160967 160967 1 SLEAEILQLQEELASSER DEIFAQSKESEKKLKSLEAEILQLQEELAS AEILQLQEELASSERARRHAEQERDELADE K S L E R A 2 1 0 0 0 2 5 0 0 1 4 0 0 0 0 3 0 0 0 0 0 0 18 0 2044.0324 P35580 P35580 1684 1701 MYH10 Myosin-10 yes yes 2 0.00028408 41.54 By MS/MS 1 1.2954 1.097 NaN 1 Median NaN NaN NaN 0 0 Median 1.2954 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 937500 401180 536320 0 0 0 937500 401180 536320 0 0 0 0 0 0 0 0 0 0 0 0 30617 2245 32184 160029 160968 160968 1 SLEAFFLYGR DKLGDHQSPATPAFKSLEAFFLYGRLYEFW TPAFKSLEAFFLYGRLYEFWWSLSRPCPNS K S L G R L 1 1 0 0 0 0 1 1 0 0 2 0 0 2 0 1 0 0 1 0 0 0 10 0 1201.6132 Q8TEQ6 Q8TEQ6 1275 1284 GEMIN5 Gem-associated protein 5 yes yes 2 0.079129 24.923 By MS/MS By matching By matching 1 2 1 1.2693 1.0854 16.111 4 Median 1.4388 1.4372 NaN 1 0 Median 1.1854 1.028 4.5691 2 0 Median NaN NaN NaN 0 0 Median 1.2818 1.1096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4912900 2072400 2840500 2196000 928740 1267300 2574300 1091600 1482700 0 0 0 142570 52043 90528 0 0 0 0 0 0 30618 3478 32185 160030;160031;160032;160033 160969 160969 1 SLEAHMYPEK DKERSVRMMLEEQVRSLEAHMYPEKLKVIA EEQVRSLEAHMYPEKLKVIAQQVQLQQQQE R S L E K L 1 0 0 0 0 0 2 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 10 0 1203.5594 Q01664 Q01664 178 187 TFAP4 Transcription factor AP-4 yes yes 3 0.045187 17.731 By MS/MS By matching 1 1 0.9235 0.89323 9.6715 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85646 0.95645 NaN 1 0 Median 0.9958 0.83419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2403400 1107300 1296100 0 0 0 0 0 0 1748900 797530 951380 654510 309790 344720 0 0 0 0 0 0 30619 2690 32186 160034;160035 160970;160971 160971 2 SLEAQVAHADQQLR KEAEQTCRHLTAQVRSLEAQVAHADQQLRD RSLEAQVAHADQQLRDLGKFQVATDALKSR R S L L R D 3 1 0 1 0 3 1 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1564.7958 A0A087WY61;K4DIE0;Q14980 Q14980 1682 1695 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 2.3753E-43 226.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 6 3 6 5 1.0924 0.96192 23.297 22 Median 1.2434 1.1694 NaN 1 0 Median 1.208 1.0264 11.871 3 0 Median 1.0467 1.1326 24.006 6 1 Median 1.1797 1.0433 9.487 3 0 Plateau 0.87838 0.889 4.732 4 0 Median 1.0869 0.89365 26.96 5 1 Median 791630000 394600000 397030000 8983700 3487100 5496500 34376000 15662000 18714000 423050000 212110000 210940000 26157000 12171000 13986000 284080000 143040000 141040000 14979000 8129800 6849500 30620 2905;77 32187 160036;160037;160038;160039;160040;160041;160042;160043;160044;160045;160046;160047;160048;160049;160050;160051;160052;160053;160054;160055;160056;160057;160058;160059;160060 160972;160973;160974;160975;160976;160977;160978;160979;160980;160981;160982;160983;160984;160985;160986;160987;160988;160989;160990;160991;160992;160993;160994;160995;160996;160997;160998;160999;161000;161001;161002;161003;161004;161005;161006;161007;161008;161009;161010;161011;161012 160981 41 SLEATLGR VNVRTTKPPKRRPLKSLEATLGRLRRATEY PKRRPLKSLEATLGRLRRATEYAPKKRIEP K S L G R L 1 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 845.46068 Q92665 Q92665 128 135 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 2 0.047098 58.917 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30621 3548 32188 160061 161013 161013 1 SLEAYLNQHLSGFGAER SDLAEVLPQHKFDSKSLEAYLNQHLSGFGA EAYLNQHLSGFGAEREATLTIAQYRAGKSN K S L E R E 2 1 1 0 0 1 2 2 1 0 3 0 0 1 0 2 0 0 1 0 0 0 17 0 1890.9224 Q709F0;F8WEV0;D6RDI8 Q709F0 24 40 ACAD11 Acyl-CoA dehydrogenase family member 11 yes no 3 0.022575 16.685 By MS/MS 2 0.80548 0.86227 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80548 0.86227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5030800 2209300 2821500 0 0 0 0 0 0 5030800 2209300 2821500 0 0 0 0 0 0 0 0 0 30622 3206 32189 160062;160063 161014;161015;161016 161016 3 SLEDALAEAQR ELEKRKDKETGGILRSLEDALAEAQRVNTK GILRSLEDALAEAQRVNTKSQSAFDLKKKN R S L Q R V 3 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1201.5939 O95347 O95347 298 308 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 7.5174E-10 175.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 1.0759 0.98798 19.137 6 Median 1.0751 1.0348 NaN 1 0 Median 1.0548 0.88394 NaN 1 0 Median 1.0768 1.1836 NaN 1 0 Median 1.1131 0.94332 NaN 1 0 Median 1.2494 1.3119 NaN 1 1 Median 0.90848 0.78034 NaN 1 0 Median 66973000 31569000 35404000 19727000 9973800 9753600 8594800 4005800 4589000 23487000 10591000 12896000 9746700 4399800 5346800 3859800 1787600 2072200 1558000 810780 747260 30623 1766 32190 160064;160065;160066;160067;160068;160069 161017;161018;161019;161020;161021;161022;161023;161024 161020 8 SLEDALR QQEKQEQVKIESLAKSLEDALRQTASVTLQ VKIESLAKSLEDALRQTASVTLQAIAAQNA K S L L R Q 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 802.41848 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 223 229 IMMT MICOS complex subunit MIC60 yes no 2 0.0080733 86.866 By MS/MS By MS/MS By matching By matching 1 1 1 2 1.0983 1.0393 13.737 5 Median 1.0983 1.0393 NaN 1 0 Median 1.4066 1.2189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93749 0.99594 NaN 1 0 Median 1.2781 1.0772 22.976 2 0 Median 17812000 8442000 9370500 10256000 5014200 5242200 3569700 1480600 2089000 0 0 0 0 0 0 2146000 1182800 963210 1840400 764380 1076100 30624 3001 32191 160070;160071;160072;160073;160074 161025;161026;161027;161028 161025 4 SLEDALSSDTSGHFR EIRAINEAYKEDYHKSLEDALSSDTSGHFR SLEDALSSDTSGHFRRILISLATGHREEGG K S L F R R 1 1 0 2 0 0 1 1 1 0 2 0 0 1 0 4 1 0 0 0 0 0 15 0 1620.738 E5RK69;P08133;E7EMC6 P08133 484 498 ANXA6 Annexin;Annexin A6 no no 2;3 3.3345E-40 178.81 By MS/MS By MS/MS By MS/MS 4 1 2 1.0557 1.0245 17.11 7 Median 1.0149 0.95875 7.9406 4 1 Median 1.3714 1.1852 NaN 1 0 Median 1.2166 1.2552 18.673 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101560000 48858000 52702000 67514000 33447000 34067000 19800000 8218100 11581000 14247000 7193000 7054100 0 0 0 0 0 0 0 0 0 30625 1898;854 32192 160075;160076;160077;160078;160079;160080;160081 161029;161030;161031;161032;161033;161034;161035;161036;161037;161038 161034 10 SLEDALSSDTSGHFRR EIRAINEAYKEDYHKSLEDALSSDTSGHFR LEDALSSDTSGHFRRILISLATGHREEGGE K S L R R I 1 2 0 2 0 0 1 1 1 0 2 0 0 1 0 4 1 0 0 0 0 0 16 1 1776.8391 E5RK69;P08133;E7EMC6 P08133 484 499 ANXA6 Annexin;Annexin A6 no no 3 0.00010219 46.926 By MS/MS 3 1.0795 1.0768 4.9535 2 Median 1.0795 1.0768 4.9535 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31536000 16023000 15513000 31536000 16023000 15513000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30626 1898;854 32193 160082;160083;160084 161039;161040 161040 2 SLEDDIR EIRRISQTYQQQYGRSLEDDIRSDTSFMFQ TYQQQYGRSLEDDIRSDTSFMFQRVLVSLS R S L I R S 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 7 0 846.40831 P09525;Q6P452;B4E1S2 P09525 135 141 ANXA4 Annexin A4;Annexin yes no 2 0.034572 47.743 By MS/MS 1 1.4481 1.2102 NaN 1 Median NaN NaN NaN 0 0 Median 1.4481 1.2102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3558700 1542300 2016400 0 0 0 3558700 1542300 2016400 0 0 0 0 0 0 0 0 0 0 0 0 30627 1917 32194 160085 161041 161041 1 SLEDKAAEVVK KDTEKEVDDLTAELKSLEDKAAEVVKNTNA AELKSLEDKAAEVVKNTNAAEESLPEIQKE K S L V K N 2 0 0 1 0 0 2 0 0 0 1 2 0 0 0 1 0 0 0 2 0 0 11 1 1187.6398 Q9NTJ3;E9PD53 Q9NTJ3 964 974 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 0.0017332 108.47 By MS/MS By MS/MS 3 1 1.0286 1.0141 51.036 3 Plateau 1.0086 0.99467 2.7393 2 2 Median NaN NaN NaN 0 0 Median 0.35889 0.4112 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15872000 7732900 8138600 11653000 4672900 6980000 0 0 0 4218600 3060000 1158600 0 0 0 0 0 0 0 0 0 30628 4108 32195 160086;160087;160088;160089 161042;161043;161044;161045 161044 4 SLEDLQDEYDFK RNVKDKVMCIEHEIKSLEDLQDEYDFKCKT EIKSLEDLQDEYDFKCKTLQNREHETNGVA K S L F K C 0 0 0 3 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 12 0 1500.662 P42224;J3KPM9;E7EPD2;D2KFR9 P42224 162 173 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 0.030808 28.013 By MS/MS 1 1.0611 1.0447 NaN 1 Median 1.0611 1.0447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2077100 1179300 897800 2077100 1179300 897800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30629 2308 32196 160090 161046 161046 1 SLEDPYSQQIR GIVWKTGPRTTIFVKSLEDPYSQQIRLQQQ IFVKSLEDPYSQQIRLQQQQAQQPLQQQQQ K S L I R L 0 1 0 1 0 2 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 0 11 0 1334.6466 Q9NVH2;A0A087WXK3 Q9NVH2 930 940 INTS7 Integrator complex subunit 7 yes no 2 3.0523E-06 113.71 By MS/MS 2 0.96691 1.0311 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96691 1.0311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5630600 2584700 3045900 0 0 0 0 0 0 5630600 2584700 3045900 0 0 0 0 0 0 0 0 0 30630 4131 32197 160091;160092 161047;161048 161048 2 SLEDQVEMLR EEKQKKLIELQAGKKSLEDQVEMLRTVKEE QAGKKSLEDQVEMLRTVKEEAEKPEREAKE K S L L R T 0 1 0 1 0 1 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1218.5914 K7ELL7;P14314 K7ELL7 168 177 PRKCSH Glucosidase 2 subunit beta yes no 2 0.00021694 128.69 By MS/MS By MS/MS By matching By matching 5 5 1 1 1.0611 1.042 23.844 12 Median 1.0971 1.083 24.372 5 0 Median 1.2585 1.0854 29.761 5 0 Median 0.94449 1.0025 NaN 1 0 Median 1.0106 0.85915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 252440000 118360000 134080000 167440000 80458000 86985000 81509000 36063000 45446000 3124000 1668400 1455600 361580 166140 195440 0 0 0 0 0 0 30631 1378 32198;32199 160093;160094;160095;160096;160097;160098;160099;160100;160101;160102;160103;160104 161049;161050;161051;161052;161053;161054;161055;161056;161057;161058;161059;161060 161050 450 12 SLEDVTAEYIHK YKEAQAELEDYRKRKSLEDVTAEYIHKAEH KRKSLEDVTAEYIHKAEHEKLMQLTNVSRA K S L H K A 1 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 1 0 1 1 0 0 12 0 1403.6933 Q9P0K7 Q9P0K7 667 678 RAI14 Ankycorbin yes yes 2 0.031417 27.742 By MS/MS 1 1.0062 0.84371 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0062 0.84371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1160800 661190 499600 0 0 0 0 0 0 0 0 0 1160800 661190 499600 0 0 0 0 0 0 30632 4204 32200 160105 161061 161061 1 SLEDVVR GLYQYKNICQQVNIKSLEDVVRAYLKMAEE ICQQVNIKSLEDVVRAYLKMAEEKTEAAKE K S L V R A 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 7 0 816.43413 Q14152 Q14152 85 91 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0045798 100.07 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.2247 1.0435 27.73 6 Median 1.0775 1.013 NaN 1 0 Median 1.2603 1.075 4.7279 3 2 Plateau 1.8525 2.0231 NaN 1 0 Median 1.2629 1.1091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32219000 14730000 17489000 9303000 4785100 4517900 20284000 8816000 11468000 2027500 891040 1136500 603760 237340 366420 0 0 0 0 0 0 30633 2860 32201 160106;160107;160108;160109;160110;160111 161062;161063;161064;161065;161066;161067 161062 6 SLEEEKYDMSGAR ______________________________ PRSLEEEKYDMSGARLALILCVTKAREGSE R S L A R L 1 1 0 1 0 0 3 1 0 0 1 1 1 0 0 2 0 0 1 0 0 0 13 1 1513.6719 P31944 P31944 6 18 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 0.0002947 96.847 By MS/MS 11 0.076522 0.072833 38.182 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.076522 0.072833 38.182 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14707000 14395000 312110 0 0 0 0 0 0 0 0 0 14707000 14395000 312110 0 0 0 0 0 0 30634 2209 32202 160112;160113;160114;160115;160116;160117;160118;160119;160120;160121;160122 161068;161069;161070;161071;161072;161073;161074;161075;161076;161077;161078 161073 11 SLEEERTPTPVHYRPHGAK LREGICSRLPGHYLRSLEEERTPTPVHYRP ERTPTPVHYRPHGAKFKINPKNGQRERVED R S L A K F 1 2 0 0 0 0 3 1 2 0 1 1 0 0 3 1 2 0 1 1 0 0 19 2 2203.1134 A2IDC7;Q4TT37;A2IDC6;Q13084 A2IDC7 31 49 MRPL28 39S ribosomal protein L28, mitochondrial yes no 4 0.06245 8.8232 By MS/MS 1 1.0751 0.99563 NaN 1 Median NaN NaN NaN 0 0 Median 1.0751 0.99563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2214100 1131700 1082400 0 0 0 2214100 1131700 1082400 0 0 0 0 0 0 0 0 0 0 0 0 30635 499 32203 160123 161079 161079 1 SLEEGEGPIAVIMTPTR IAFLLPMFRHIMDQRSLEEGEGPIAVIMTP EEGEGPIAVIMTPTRELALQITKECKKFSK R S L T R E 1 1 0 0 0 0 3 2 0 2 1 0 1 0 2 1 2 0 0 1 0 0 17 0 1798.9135 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 439 455 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 2.6456E-12 141.38 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 0.79985 0.73666 17.629 6 Median 0.70059 0.68645 NaN 1 0 Median 0.80791 0.73957 NaN 1 0 Median 0.80067 0.88062 1.5757 2 0 Median 0.62686 0.54903 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86935 0.73376 NaN 1 0 Median 18902000 10582000 8319900 2594700 1490600 1104100 2292700 1208100 1084600 13554000 7620800 5933500 263670 146120 117550 0 0 0 196550 116390 80163 30636 3216 32204;32205 160124;160125;160126;160127;160128;160129 161080;161081;161082;161083;161084;161085;161086;161087;161088;161089 161088 1688 10 SLEEILNSIPPPPPPAMTNEAGAPR PATAAETASEELDNRSLEEILNSIPPPPPP PPPPPAMTNEAGAPRLMITHIVNQNFKSYA R S L P R L 3 1 2 0 0 0 3 1 0 2 2 0 1 0 7 2 1 0 0 0 0 0 25 0 2597.3159 Q9NTJ3;C9JR83;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 57 81 SMC4 Structural maintenance of chromosomes protein 4 yes no 3 1.6467E-05 44.258 By MS/MS 1 0.33882 0.32926 NaN 1 Median 0.33882 0.32926 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3685500 2943100 742330 3685500 2943100 742330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30637 4108 32206 160130 161090 161090 1 SLEEIYLFSLPIK PVTKLGRLVKDMKIKSLEEIYLFSLPIKES IKSLEEIYLFSLPIKESEIIDFFLGASLKD K S L I K E 0 0 0 0 0 0 2 0 0 2 3 1 0 1 1 2 0 0 1 0 0 0 13 0 1550.8596 P15880;H0YEN5;E9PQD7;E9PMM9;E9PPT0;H3BNG3;H0YE27 P15880 77 89 RPS2 40S ribosomal protein S2 yes no 2 2.7171E-05 93.058 By matching By MS/MS By MS/MS By MS/MS 4 2 2 1 0.9795 0.99143 10.706 9 Median 0.97786 0.95267 8.1333 4 0 Median 0.97866 0.83167 1.9512 2 0 Median 0.99161 1.0036 0.2629 2 0 Median NaN NaN NaN 0 0 Median 1.1409 1.1269 NaN 1 0 Median NaN NaN NaN 0 0 Median 46124000 23013000 23111000 2435400 1178400 1257000 37628000 18941000 18687000 4576400 2205600 2370800 0 0 0 1484100 687600 796530 0 0 0 30638 2020 32207 160131;160132;160133;160134;160135;160136;160137;160138;160139 161091;161092;161093;161094;161095 161094 5 SLEEKNESLTEHPR NNLLKNNLLNTKLEKSLEEKNESLTEHPRS KSLEEKNESLTEHPRSTELPKTHIEQIQKH K S L P R S 0 1 1 0 0 0 4 0 1 0 2 1 0 0 1 2 1 0 0 0 0 0 14 1 1667.8115 F8VXG7;Q99590;A0A0A0MTP7 F8VXG7 488 501 SCAF11 Protein SCAF11 yes no 3;4 0.00015507 69.108 By MS/MS By MS/MS By MS/MS By MS/MS 5 1 3 2 0.85064 0.83594 52.972 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96638 1.105 79.042 5 1 Median 0.86591 0.83594 NaN 1 0 Median 0.5732 0.64885 32.099 3 0 Median 0.80708 0.7092 7.4574 2 2 Median 23606000 12566000 11040000 0 0 0 0 0 0 9897900 4492900 5405000 956690 442940 513750 11556000 7040100 4516100 1195300 590440 604830 30639 1072 32208 160140;160141;160142;160143;160144;160145;160146;160147;160148;160149;160150 161096;161097;161098;161099;161100;161101;161102;161103;161104;161105;161106;161107;161108 161102 13 SLEELLLDANQLR CSLQAVPEEIYRYSRSLEELLLDANQLREL SRSLEELLLDANQLRELPKPFFRLLNLRKL R S L L R E 1 1 1 1 0 1 2 0 0 0 5 0 0 0 0 1 0 0 0 0 0 0 13 0 1512.8148 A0A0G2JNZ2;A0A0G2JPP5;Q14160;Q5T0G3;Q9BTT6 A0A0G2JNZ2 37 49 SCRIB;LRRC1 Protein scribble homolog;Leucine-rich repeat-containing protein 1 no no 2 0.0024138 47.938 By MS/MS By MS/MS 2 1 1.4588 1.2937 23.91 3 Median NaN NaN NaN 0 0 Median 1.3145 1.1454 17.21 2 0 Median 1.4657 1.636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4577000 2035400 2541600 0 0 0 4035800 1810700 2225100 541250 224700 316550 0 0 0 0 0 0 0 0 0 30640 283;3829 32209 160151;160152;160153 161109;161110;161111 161110 3 SLEELRLEDYQANR TKHQCITAMKEYESKSLEELRLEDYQANRK KSLEELRLEDYQANRKGPQNQVGAGTTTGL K S L N R K 1 2 1 1 0 1 3 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 14 1 1734.8537 P52948;A0A3B3ITD8 P52948 199 212 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2;3 3.1304E-10 171.05 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 2 1.1184 1.2466 56.952 11 Median 1.122 1.2466 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1184 1.2923 55.434 3 0 Median 1.243 1.1577 24.421 2 0 Median 0.88404 0.96053 77.215 3 0 Median 0.99535 0.88984 47.982 2 0 Median 97004000 48698000 48306000 3251900 1972600 1279300 0 0 0 69238000 33369000 35870000 3041500 1321900 1719700 19030000 10888000 8142200 2442000 1146500 1295500 30641 2462 32210 160154;160155;160156;160157;160158;160159;160160;160161;160162;160163;160164 161112;161113;161114;161115;161116;161117 161115 6 SLEGADLPNLLFYGPPGTGK DEVAFQEEVVAVLKKSLEGADLPNLLFYGP DLPNLLFYGPPGTGKTSTILAAARELFGPE K S L G K T 1 0 1 1 0 0 1 4 0 0 4 1 0 1 3 1 1 0 1 0 0 0 20 0 2045.047 P35249;C9JZI1;C9J8M3;C9JTT7;C9JXZ7;C9JGY5;F8WE44 P35249 65 84 RFC4 Replication factor C subunit 4 yes no 2 0.0018445 28.632 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.60499 0.59203 19.999 6 Median NaN NaN NaN 0 0 Median 0.69877 0.59541 34.01 2 0 Median 0.57191 0.59203 2.8813 2 0 Median 0.6059 0.51722 NaN 1 0 Median 0.77803 0.7689 NaN 1 0 Median NaN NaN NaN 0 0 Median 11552000 6834600 4717100 0 0 0 1844800 1060200 784570 7822900 4744600 3078300 214470 124140 90331 1669500 905570 763960 0 0 0 30642 2237 32211 160165;160166;160167;160168;160169;160170 161118;161119;161120;161121;161122 161122 5 SLEGEVVPFK SVCFDEKSKHITAMKSLEGEVVPFKNKVPL ITAMKSLEGEVVPFKNKVPLSNNVETWLND K S L F K N 0 0 0 0 0 0 2 1 0 0 1 1 0 1 1 1 0 0 0 2 0 0 10 0 1103.5863 Q8NCM8 Q8NCM8 1478 1487 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.0026267 73.248 By MS/MS 1 0.6969 0.69727 NaN 1 Median 0.6969 0.69727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8769400 4623300 4146000 8769400 4623300 4146000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30643 3418 32212 160171 161123 161123 1 SLEGGNFIAGVLIQGTQER TTTVKEVAEMDSVKRSLEGGNFIAGVLIQG GNFIAGVLIQGTQERMSIPEALRRHILRPG R S L E R M 1 1 1 0 0 2 2 4 0 2 2 0 0 1 0 1 1 0 0 1 0 0 19 0 1988.0327 P58107;A0A075B730 P58107 1566 1584 EPPK1 Epiplakin yes no 2;3 1.5871E-18 105.14 By MS/MS By matching By matching 3 2 1 1.3268 1.2004 7.8962 6 Median 1.2857 1.2707 9.3285 3 1 Median 1.4252 1.2004 0.30468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2963 1.1002 NaN 1 0 Median 17467000 7069500 10398000 14954000 6018800 8935400 2414400 1005800 1408600 0 0 0 0 0 0 0 0 0 98747 44879 53868 30644 2520 32213 160172;160173;160174;160175;160176;160177 161124;161125;161126 161125 3 SLEGTEAQVFK LCGMLHRPRHATVSRSLEGTEAQVFKAKFK TVSRSLEGTEAQVFKAKFKNWDDVLTVDYT R S L F K A 1 0 0 0 0 1 2 1 0 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1207.6085 Q13045 Q13045 822 832 FLII Protein flightless-1 homolog yes yes 2 0.0004849 68.735 By MS/MS By matching 1 1 1.3311 1.3074 38.398 2 Median 1.0234 0.99653 NaN 1 0 Median 1.7313 1.7152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8464000 3642700 4821300 5838600 2649400 3189200 2625400 993290 1632100 0 0 0 0 0 0 0 0 0 0 0 0 30645 2781 32214 160178;160179 161127 161127 1 SLEICHPQER VLPSNAVWMENSKLKSLEICHPQERNIFNR NSKLKSLEICHPQERNIFNRIFGGFLMRKA K S L E R N 0 1 0 0 1 1 2 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 10 0 1267.5979 Q9Y305;H7C5Q2 Q9Y305 295 304 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2;3 0.001515 68.735 By MS/MS 3 1.2409 1.0788 17.153 2 Median NaN NaN NaN 0 0 Median 1.2409 1.0788 17.153 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2784900 1248000 1536900 0 0 0 2784900 1248000 1536900 0 0 0 0 0 0 0 0 0 0 0 0 30646 4400 32215 160180;160181;160182 161128;161129;161130 161128 3 SLEIEEK YSTFQSHEPEFDYLKSLEIEEKINKIRWLP EPEFDYLKSLEIEEKINKIRWLPQKNAAQF K S L E K I 0 0 0 0 0 0 3 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 7 0 846.43346 P63151;E5RIY1;Q66LE6;H0YB06;Q00005;Q9Y2T4 P63151 89 95 PPP2R2A;PPP2R2D;PPP2R2B;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform yes no 2 0.0061063 94.407 By MS/MS By matching 1 1 1.0897 0.98595 6.0662 2 Median 1.0731 1.0292 NaN 1 0 Median 1.1066 0.94456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6108000 2739000 3369000 2839000 1333800 1505200 3269000 1405200 1863800 0 0 0 0 0 0 0 0 0 0 0 0 30647 2619 32216 160183;160184 161131;161132;161133 161132 3 SLEIQKPAVAPR KKYSSLNLFDTYKGKSLEIQKPAVAPRHGL KGKSLEIQKPAVAPRHGLQSLGKVAIARRM K S L P R H 2 1 0 0 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 1 0 0 12 1 1307.7561 P48634 P48634 30 41 PRRC2A Protein PRRC2A yes yes 2;3 0.00015995 76.927 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 0.79764 0.78526 30.272 9 Median 0.9082 0.92241 22.767 2 0 Median 0.80003 0.76878 1.0286 2 0 Median 0.79161 0.95978 12.623 2 0 Median 0.81999 0.79805 25.205 2 0 Median 0.36323 0.3962 NaN 1 0 Median NaN NaN NaN 0 0 Median 12249000 6388600 5860500 6149700 3434500 2715200 2044600 956330 1088300 2551600 1147000 1404600 899750 392970 506780 603470 457800 145670 0 0 0 30648 2363 32217 160185;160186;160187;160188;160189;160190;160191;160192;160193 161134;161135;161136;161137 161134 4 SLELNGAVEPSEGAPR ILDMRSKRVRSLLGRSLELNGAVEPSEGAP LELNGAVEPSEGAPRAPPGPAGLSGGESLL R S L P R A 2 1 1 0 0 0 3 2 0 0 2 0 0 0 2 2 0 0 0 1 0 0 16 0 1624.8057 F5GYK2;Q9NRL3;M0R0P4;M0R2A7;M0QYS2;R4GN16 F5GYK2 87 102 STRN4 Striatin-4 yes no 2 0.0010897 56.225 By MS/MS 1 0.59469 0.58078 NaN 1 Median 0.59469 0.58078 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2882300 1916400 965960 2882300 1916400 965960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30649 1011 32218 160194 161138 161138 1 SLELNPNNSTAMLR ILLGNYCVAVADAKKSLELNPNNSTAMLRK KSLELNPNNSTAMLRKGICEYHEKNYAAAL K S L L R K 1 1 3 0 0 0 1 0 0 0 3 0 1 0 1 2 1 0 0 0 0 0 14 0 1558.7773 Q9Y2Z0 Q9Y2Z0 71 84 SUGT1 Suppressor of G2 allele of SKP1 homolog yes yes 2 5.4319E-08 147.37 By MS/MS By matching By matching 2 1 1 1.0091 0.88824 24.152 4 Median 0.77107 0.75774 38.622 2 0 Median 1.041 0.90354 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0207 0.8732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17266000 8195800 9070100 16013000 7549600 8463300 820090 417450 402640 0 0 0 432890 228730 204150 0 0 0 0 0 0 30650 4398 32219 160195;160196;160197;160198 161139;161140 161139 2 SLELPSQEQLSR S L S R 0 1 0 0 0 2 2 0 0 0 3 0 0 0 1 3 0 0 0 0 0 0 12 0 1385.7151 REV__Q702N8 yes yes 2 0.00039094 138.98 By MS/MS By matching By MS/MS By MS/MS 3 2 3 4 1.2984 1.3051 23.864 12 Linear 1.0331 0.96648 6.8372 3 0 Plateau 0.96833 0.82016 5.5379 2 0 Median 1.2741 1.2339 3.2826 3 0 Median 1.2536 1.0467 31.234 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 268330000 118870000 149460000 19950000 10368000 9582800 2412200 1315500 1096700 204770000 88848000 115920000 41194000 18338000 22856000 0 0 0 0 0 0 + 30651 4547 32220 160199;160200;160201;160202;160203;160204;160205;160206;160207;160208;160209;160210 161141;161142;161143;161144;161145 161143 5 SLENAIEWSVK NSMQNFLRGRPKTFKSLENAIEWSVKSGQI KTFKSLENAIEWSVKSGQIRNLESARVSMV K S L V K S 1 0 1 0 0 0 2 0 0 1 1 1 0 0 0 2 0 1 0 1 0 0 11 0 1274.6507 Q9Y570 Q9Y570 207 217 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.1234 1.0338 15.032 6 Median 1.0982 1.0133 NaN 1 0 Median 1.2728 1.1408 27.167 2 0 Median 1.0792 1.1339 10.243 2 0 Median 1.1484 0.95957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47918000 22057000 25861000 21725000 10130000 11595000 17424000 7815500 9608200 8225800 3876600 4349200 543640 234860 308770 0 0 0 0 0 0 30652 4453 32221 160211;160212;160213;160214;160215;160216 161146;161147;161148;161149;161150 161146 5 SLENQTYFK DKPELEVVLTEDALKSLENQTYFKSFEENG TEDALKSLENQTYFKSFEENGKGSIINLET K S L F K S 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 9 0 1128.5451 A0A0A0MRF6;Q99996;A0A0A0MRE9;H7BYL6 A0A0A0MRF6 2487 2495 AKAP9 A-kinase anchor protein 9 yes no 2 0.063201 27.487 By MS/MS By matching By matching By matching By matching By matching 2 2 1 2 1 1 1.3179 1.1408 38.974 9 Median 1.3867 1.2999 18.47 2 0 Median 0.70232 0.67688 70.681 2 0 Median 1.3179 1.2693 NaN 1 0 Median 1.2685 1.0781 4.1769 2 0 Median 1.4393 1.4305 NaN 1 0 Median 1.6817 1.4114 NaN 1 0 Median 49634000 20010000 29624000 15304000 5639600 9664500 4409900 1802000 2607900 17974000 7438200 10535000 7056100 3064100 3991900 4059600 1778200 2281400 830470 287570 542900 30653 158 32222 160217;160218;160219;160220;160221;160222;160223;160224;160225 161151 161151 1 SLENYHFVDEHGKDQGINIR ERVVTSAREHIYDLRSLENYHFVDEHGKDQ HFVDEHGKDQGINIRQKVKELVEFAQDDDR R S L I R Q 0 1 2 2 0 1 2 2 2 2 1 1 0 1 0 1 0 0 1 1 0 0 20 1 2370.1353 Q14677 Q14677 110 129 CLINT1 Clathrin interactor 1 yes yes 4 1.4435E-05 39.863 By MS/MS By matching 1 1 0.9503 0.98092 6.824 2 Median 0.93168 0.93472 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96928 1.0294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19101000 8189400 10912000 10221000 4062100 6159000 0 0 0 8880100 4127300 4752900 0 0 0 0 0 0 0 0 0 30654 2888 32223 160226;160227 161152 161152 1 SLEPGTPR DEPQRLQFPLPTAQRSLEPGTPRWANYVKG PLPTAQRSLEPGTPRWANYVKGVIQYYPAA R S L P R W 0 1 0 0 0 0 1 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 8 0 855.44503 P51570;K7ERJ9;K7ERN9 P51570 98 105 GALK1 Galactokinase yes no 2 0.011256 57.281 By MS/MS 1 0.92687 0.79083 NaN 1 Median NaN NaN NaN 0 0 Median 0.92687 0.79083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1696400 841610 854760 0 0 0 1696400 841610 854760 0 0 0 0 0 0 0 0 0 0 0 0 30655 2434 32224 160228 161153;161154 161153 2 SLEPMAGQLSNSVATK IRDEIKKTVPPCVSRSLEPMAGQLSNSVAT LEPMAGQLSNSVATKLTAVEGSMKENISKL R S L T K L 2 0 1 0 0 1 1 1 0 0 2 1 1 0 1 3 1 0 0 1 0 0 16 0 1631.8189 Q6P2E9 Q6P2E9 1058 1073 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 1.7908E-10 113.24 By MS/MS 1 0.6802 0.7253 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6802 0.7253 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19268000 11057000 8211700 0 0 0 0 0 0 19268000 11057000 8211700 0 0 0 0 0 0 0 0 0 30656 3155 32225 160229 161155 161155 1 SLEPPVLELSPGAK STPRKQPRKSPLVPRSLEPPVLELSPGAKA RSLEPPVLELSPGAKAQLEELMMVGDLLEV R S L A K A 1 0 0 0 0 0 2 1 0 0 3 1 0 0 3 2 0 0 0 1 0 0 14 0 1435.7922 P29375 P29375 1429 1442 KDM5A Lysine-specific demethylase 5A yes yes 2 0.00024805 77.64 By MS/MS 1 0.64208 0.71564 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64208 0.71564 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3693800 1699700 1994100 0 0 0 0 0 0 3693800 1699700 1994100 0 0 0 0 0 0 0 0 0 30657 2172 32226 160230 161156 161156 1 SLEQLQK DAKKQQNQELQEQLRSLEQLQKENKELRAE QELQEQLRSLEQLQKENKELRAEAERLGHE R S L Q K E 0 0 0 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 7 0 844.46543 A0A087WY61;K4DIE0;Q14980 Q14980 1637 1643 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.005702 95.957 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.97856 0.96341 9.0072 5 Median NaN NaN NaN 0 0 Median 1.1459 1.0119 NaN 1 0 Median 0.86688 0.96341 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88036 0.91307 13.499 2 0 Median 1.0097 0.86522 NaN 1 0 Median 17318000 9144800 8172900 0 0 0 1949000 818690 1130300 6812800 3632300 3180600 0 0 0 6295300 3537800 2757500 2260400 1156000 1104500 30658 2905;77 32227 160231;160232;160233;160234;160235 161157;161158;161159;161160;161161;161162;161163 161157 7 SLEQLQKENK DAKKQQNQELQEQLRSLEQLQKENKELRAE QEQLRSLEQLQKENKELRAEAERLGHELQQ R S L N K E 0 0 1 0 0 2 2 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1215.6459 A0A087WY61;K4DIE0;Q14980 Q14980 1637 1646 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 0.052987 17.809 By matching By MS/MS By matching 1 1 1 0.91641 0.8641 21.722 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0645 1.2209 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82617 0.8641 NaN 1 0 Median 0.91641 0.81778 NaN 1 0 Median 2190600 1116600 1073900 0 0 0 0 0 0 385070 183110 201960 0 0 0 1308600 679590 628990 496910 253940 242970 30659 2905;77 32228 160236;160237;160238 161164 161164 1 SLEQNIQLPAALLSR LAAANPAYGRYNPRRSLEQNIQLPAALLSR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN R S L S R F 2 1 1 0 0 2 1 0 0 1 4 0 0 0 1 2 0 0 0 0 0 0 15 0 1651.9257 P33993 P33993 500 514 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 5.5054E-10 161.94 By MS/MS By MS/MS By MS/MS By matching 2 4 3 1 0.91907 0.86058 35.077 10 Median 0.81789 0.79179 6.0361 2 0 Median 1.0328 0.901 2.1062 4 0 Median 0.76176 0.77107 69.759 3 0 Median NaN NaN NaN 0 0 Median 0.79309 0.84379 NaN 1 0 Median NaN NaN NaN 0 0 Median 103760000 54419000 49342000 20678000 11318000 9359400 55939000 28293000 27646000 25242000 13847000 11394000 0 0 0 1902000 960440 941560 0 0 0 30660 2225 32229 160239;160240;160241;160242;160243;160244;160245;160246;160247;160248 161165;161166;161167;161168;161169;161170;161171;161172;161173;161174;161175;161176;161177 161167 13 SLESINSR ______________________________ AAKKTKKSLESINSRLQLVMKSGKYVLGYK K S L S R L 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 8 0 904.46141 E5RI99;P62888;E5RJH3;A0A0C4DH44 E5RI99 10 17 RPL30 60S ribosomal protein L30 yes no 2 0.0031222 101.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 3 2 1.1415 1.0571 13.243 11 Median 1.0927 1.0746 2.3177 2 0 Median 1.3412 1.13 10.94 2 0 Median 1.2128 1.2295 NaN 1 0 Median 1.3016 1.0242 NaN 1 0 Median 1.0249 1.089 15.045 3 0 Median 1.1216 0.87818 3.2906 2 0 Median 49540000 22795000 26745000 14636000 7047900 7588000 21293000 9583000 11710000 7967900 3656300 4311600 2908600 1271300 1637200 2194200 987590 1206600 540930 249020 291910 30661 849 32230 160249;160250;160251;160252;160253;160254;160255;160256;160257;160258;160259 161178;161179;161180;161181;161182;161183;161184;161185 161181 8 SLESLDTSLFAK TLEERAQRLFSTKGKSLESLDTSLFAKNPK KGKSLESLDTSLFAKNPKSKGTKRDTERNK K S L A K N 1 0 0 1 0 0 1 0 0 0 3 1 0 1 0 3 1 0 0 0 0 0 12 0 1309.6765 Q12874 Q12874 292 303 SF3A3 Splicing factor 3A subunit 3 yes yes 2 5.1455E-06 134.68 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 1.1362 1.0047 12.671 8 Median 1.1407 1.067 NaN 1 0 Median 1.2458 1.0436 NaN 1 0 Median 1.0213 0.98515 NaN 1 0 Median 1.1301 0.96215 7.7535 2 0 Median 1.1802 1.1673 22.853 2 0 Median 1.1318 0.93107 NaN 1 0 Median 128340000 60296000 68040000 17594000 7606100 9988100 11279000 4918400 6360800 44715000 21174000 23541000 11464000 5551800 5912600 38230000 18530000 19701000 5053000 2515700 2537300 30662 2767 32231 160260;160261;160262;160263;160264;160265;160266;160267 161186;161187;161188;161189;161190;161191;161192;161193;161194 161193 9 SLESLHSFVAAATK LQYAKLLNSSKARLRSLESLHSFVAAATKE RSLESLHSFVAAATKELMWLNEKEEEEVGF R S L T K E 3 0 0 0 0 0 1 0 1 0 2 1 0 1 0 3 1 0 0 1 0 0 14 0 1459.7671 Q15149;H0YDN1;E9PMV1 Q15149 751 764 PLEC Plectin yes no 2;3 3.9091E-26 159.94 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 1 2 1.234 1.2528 24.422 10 Median 1.239 1.2434 5.9568 3 0 Median 1.1387 1.001 44.069 2 0 Median 1.1888 1.2722 4.5381 2 1 Median 1.5368 1.4349 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2482 1.0765 46.012 2 0 Median 106710000 51335000 55376000 74936000 36063000 38873000 10010000 5504600 4505500 20499000 9237800 11262000 738840 262530 476300 0 0 0 526650 267030 259620 30663 2933 32232 160268;160269;160270;160271;160272;160273;160274;160275;160276;160277 161195;161196;161197;161198;161199;161200;161201;161202 161201 8 SLESNPEQLQAMR VPLLPSDVKLKLYDRSLESNPEQLQAMRHI DRSLESNPEQLQAMRHIVTGTTRPAPYIIF R S L M R H 1 1 1 0 0 2 2 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 13 0 1501.7195 Q9HCE1;Q5JR04 Q9HCE1 496 508 MOV10 Putative helicase MOV-10 yes no 2 0.001095 59.426 By matching By MS/MS By matching 1 1 1 1.1646 0.96426 15.656 3 Median 0.92351 0.88997 NaN 1 0 Median 1.4088 1.204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1646 0.96426 NaN 1 0 Median 13440000 6759500 6680000 10148000 5326600 4821500 2930900 1278300 1652700 0 0 0 0 0 0 0 0 0 360500 154700 205800 30664 4029 32233 160278;160279;160280 161203;161204 161203 2 SLESQVENLQK QELKETLNQAETKSKSLESQVENLQKTLSE TKSKSLESQVENLQKTLSEKETEARNLQEQ K S L Q K T 0 0 1 0 0 2 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1273.6514 P12270 P12270 1492 1502 TPR Nucleoprotein TPR yes yes 2 3.2948E-05 155.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.4984 1.3504 19.306 7 Median 1.5919 1.5974 NaN 1 0 Median 1.483 1.3179 9.2073 2 1 Median 0.97863 1.0581 2.7142 2 1 Median 1.4984 1.3504 NaN 1 0 Median 1.6728 1.7517 NaN 1 0 Median NaN NaN NaN 0 0 Median 169000000 78605000 90393000 24574000 10606000 13968000 28202000 11470000 16732000 96211000 48771000 47441000 5207200 2151800 3055500 14804000 5606900 9197200 0 0 0 30665 1978 32234 160281;160282;160283;160284;160285;160286;160287 161205;161206;161207;161208;161209;161210;161211;161212;161213 161208 9 SLESTTLTEK KPWHKNCFRCAKCGKSLESTTLTEKEGEIY AKCGKSLESTTLTEKEGEIYCKGCYAKNFG K S L E K E 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 3 0 0 0 0 0 10 0 1107.5659 Q16527;F8VQR7;F8VW96 Q16527 152 161 CSRP2 Cysteine and glycine-rich protein 2 yes no 2 0.00034968 84.213 By MS/MS By MS/MS 2 2 1.0041 0.95964 31.97 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0041 0.97708 2.2569 2 0 Median 0.84558 0.70057 44.209 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26197000 13040000 13156000 0 0 0 0 0 0 22160000 11092000 11067000 4037000 1947900 2089100 0 0 0 0 0 0 30666 2984 32235 160288;160289;160290;160291 161214;161215;161216 161216 3 SLESVYSLYPTLSR LKYARVKEVEEMCKRSLESVYSLYPTLSRL RSLESVYSLYPTLSRLQAIGELESIGELFS R S L S R L 0 1 0 0 0 0 1 0 0 0 3 0 0 0 1 4 1 0 2 1 0 0 14 0 1613.8301 Q13315 Q13315 2162 2175 ATM Serine-protein kinase ATM yes yes 2 0.012728 46.706 By MS/MS 1 0.60514 0.67425 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60514 0.67425 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2036000 1202900 833100 0 0 0 0 0 0 2036000 1202900 833100 0 0 0 0 0 0 0 0 0 30667 2805 32236 160292 161217 161217 1 SLETCMYDHK DDLLIIEEKIDLEVRSLETCMYDHKTFSEI DLEVRSLETCMYDHKTFSEILNRVQKAVDD R S L H K T 0 0 0 1 1 0 1 0 1 0 1 1 1 0 0 1 1 0 1 0 0 0 10 0 1282.5322 Q14204 Q14204 863 872 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 0.00021522 102.06 By MS/MS By MS/MS By MS/MS 3 1 1 0.98132 0.86801 8.2569 5 Median NaN NaN NaN 0 0 Median 0.98132 0.86801 5.9686 3 2 Median 0.79935 0.86642 NaN 1 1 Median 1.0995 1.0347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32370000 15903000 16467000 0 0 0 28063000 13724000 14340000 3366600 1759000 1607600 939700 420130 519570 0 0 0 0 0 0 30668 2865 32237 160293;160294;160295;160296;160297 161218;161219;161220;161221;161222;161223 161222 6 SLETEILESLK EFLKSLKEESVEAVKSLETEILESLKSAGQ EAVKSLETEILESLKSAGQENLETLKSPET K S L L K S 0 0 0 0 0 0 3 0 0 1 3 1 0 0 0 2 1 0 0 0 0 0 11 0 1260.6813 P48681 P48681 820 830 NES Nestin yes yes 2 0.018018 54.608 By MS/MS 1 1.3793 1.223 NaN 1 Median NaN NaN NaN 0 0 Median 1.3793 1.223 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5182400 2081100 3101400 0 0 0 5182400 2081100 3101400 0 0 0 0 0 0 0 0 0 0 0 0 30669 2366 32238 160298 161224 161224 1 SLETENAGLR QELNDRLAVYIDRVRSLETENAGLRLRITE IDRVRSLETENAGLRLRITESEEVVSREVS R S L L R L 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1088.5462 P02545;Q3BDU5 P02545 51 60 LMNA Prelamin-A/C;Lamin-A/C no no 2 4.7547E-22 194.44 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 5 5 1.1666 1.0799 21.85 18 Median NaN NaN NaN 0 0 Median 0.7586 0.65529 NaN 1 0 Median 1.098 1.0973 7.3362 3 1 Median 1.5703 1.3386 32.289 4 1 Median 1.0591 1.0483 6.8809 5 1 Median 1.4278 1.2159 12.178 5 1 Median 435540000 191750000 243790000 0 0 0 1699400 872180 827240 92637000 42811000 49826000 39552000 15066000 24486000 205070000 93250000 111820000 96580000 39750000 56830000 30670 1834;3010 32239 160299;160300;160301;160302;160303;160304;160305;160306;160307;160308;160309;160310;160311;160312;160313;160314;160315;160316 161225;161226;161227;161228;161229;161230;161231;161232;161233;161234;161235;161236;161237;161238;161239;161240;161241;161242;161243;161244;161245;161246;161247;161248;161249;161250;161251;161252;161253;161254 161249 30 SLETENSALQLQVTER RELNDRLAVYIDKVRSLETENSALQLQVTE LETENSALQLQVTEREEVRGRELTGLKALY R S L E R E 1 1 1 0 0 2 3 0 0 0 3 0 0 0 0 2 2 0 0 1 0 0 16 0 1816.9167 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 52 67 LMNB1 Lamin-B1 yes no 2;3 1.8192E-72 245.94 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 6 3 0.99875 1.049 33.255 15 Median NaN NaN NaN 0 0 Median 0.57736 0.51869 NaN 1 0 Median 1.057 1.0659 24.855 2 0 Median 1.5894 1.3266 36.512 3 0 Median 0.91938 0.93044 12.858 6 2 Median 1.3848 1.1261 10.202 3 0 Median 107580000 54392000 53189000 0 0 0 188510 127940 60571 28562000 15090000 13472000 11543000 4525900 7017200 64088000 33375000 30713000 3199600 1273500 1926100 30671 2084 32240 160317;160318;160319;160320;160321;160322;160323;160324;160325;160326;160327;160328;160329;160330;160331 161255;161256;161257;161258;161259;161260;161261;161262;161263;161264;161265;161266;161267;161268;161269;161270 161256 16 SLETENSALQLQVTEREEVR RELNDRLAVYIDKVRSLETENSALQLQVTE NSALQLQVTEREEVRGRELTGLKALYETEL R S L V R G 1 2 1 0 0 2 5 0 0 0 3 0 0 0 0 2 2 0 0 2 0 0 20 1 2330.1714 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 52 71 LMNB1 Lamin-B1 yes no 2;3 2.017E-48 209.73 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 4 0.95997 1.0713 28.912 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95997 1.0713 NaN 1 0 Median 1.904 1.775 42.094 2 0 Median 0.83912 0.92693 6.1258 6 0 Median 1.412 1.2625 10.647 4 0 Median 389370000 196890000 192480000 0 0 0 0 0 0 42183000 19938000 22244000 16309000 5324500 10985000 318710000 166860000 151850000 12168000 4768800 7398900 30672 2084 32241 160332;160333;160334;160335;160336;160337;160338;160339;160340;160341;160342;160343;160344 161271;161272;161273;161274;161275;161276;161277;161278;161279;161280;161281;161282;161283;161284;161285;161286;161287;161288;161289;161290;161291;161292;161293;161294;161295;161296;161297;161298;161299 161276 29 SLETSAFVK KFSQLKWKALYSDPKSLETSAFVKSYKNLA LYSDPKSLETSAFVKSYKNLAFYWILKAGH K S L V K S 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 9 0 980.51786 Q9HB40;I3L4Z9 Q9HB40 408 416 SCPEP1 Retinoid-inducible serine carboxypeptidase yes no 2 0.0025104 71.501 By matching By MS/MS 1 1 1.3994 1.2588 22.168 2 Median 1.1401 1.0762 NaN 1 0 Median 1.7176 1.4725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18884000 7936700 10947000 11983000 5198100 6784600 6900900 2738600 4162300 0 0 0 0 0 0 0 0 0 0 0 0 30673 4015 32242 160345;160346 161300;161301 161300 2 SLETSLVPLSDPK SLMGQKGHALLIDCRSLETSLVPLSDPKLA CRSLETSLVPLSDPKLAVLITNSNVRHSLA R S L P K L 0 0 0 1 0 0 1 0 0 0 3 1 0 0 2 3 1 0 0 1 0 0 13 0 1384.745 P51570 P51570 205 217 GALK1 Galactokinase yes yes 2 5.2825E-07 107.06 By MS/MS By matching By matching 1 1 1 0.62894 0.58011 34.545 3 Median 0.62894 0.58011 NaN 1 0 Median 0.99133 0.84606 NaN 1 0 Median 0.4043 0.42442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36753000 22631000 14123000 23305000 14705000 8599800 7170300 3452100 3718100 6277600 4473100 1804600 0 0 0 0 0 0 0 0 0 30674 2434 32243 160347;160348;160349 161302;161303 161302 2 SLETVYLER LLESWSDLDELKGARSLETVYLERNPLQKD ELKGARSLETVYLERNPLQKDPQYRRKVML R S L E R N 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 1 1 0 0 9 0 1108.5764 H7C003;Q15435;C9J177;H7C3Q5 H7C003 297 305 PPP1R7 Protein phosphatase 1 regulatory subunit 7 yes no 2 0.00011364 145.63 By MS/MS 1 1.2237 1.2201 NaN 1 Median 1.2237 1.2201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12456000 6609500 5846800 12456000 6609500 5846800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30675 1254 32244 160350 161304;161305 161305 2 SLEVILR IQETQAELPRGSIPRSLEVILRAEAVESAQ LPRGSIPRSLEVILRAEAVESAQAGDKCDF R S L L R A 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 828.5069 Q14566 Q14566 223 229 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0037366 102.98 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 2 2 1 1 1.2528 1.083 13.659 11 Median 1.0245 0.99893 2.3369 2 0 Median 1.4013 1.2398 8.5053 3 0 Median 0.84019 0.91601 12.401 2 0 Median 1.4458 1.2415 6.5674 2 0 Median 0.89008 0.9496 NaN 1 0 Median 1.2847 1.0853 NaN 1 0 Median 41949000 19784000 22165000 13923000 7068100 6854500 16216000 6977900 9238500 9397700 4552500 4845300 734560 320210 414350 1492300 788610 703720 185740 76711 109030 30676 2881 32245 160351;160352;160353;160354;160355;160356;160357;160358;160359;160360;160361 161306;161307;161308;161309;161310 161309 5 SLEVLVADLVNAQK KIMEEKIQISGSNYKSLEVLVADLVNAQKD KSLEVLVADLVNAQKDSMQDESSQTSLQKE K S L Q K D 2 0 1 1 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 3 0 0 14 0 1497.8403 P98170 P98170 406 419 XIAP E3 ubiquitin-protein ligase XIAP yes yes 2 6.7347E-06 93.058 By MS/MS 1 1.3256 1.1385 NaN 1 Median NaN NaN NaN 0 0 Median 1.3256 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2123100 894120 1229000 0 0 0 2123100 894120 1229000 0 0 0 0 0 0 0 0 0 0 0 0 30677 2670 32246 160362 161311;161312 161311 2 SLEVWGSQEALEEAK WGDMKLYLKLQIVKRSLEVWGSQEALEEAK SLEVWGSQEALEEAKEVRQENREKMKQKKF R S L A K E 2 0 0 0 0 1 4 1 0 0 2 1 0 0 0 2 0 1 0 1 0 0 15 0 1674.8101 F2Z2T2;P23025 F2Z2T2 190 204 XPA DNA repair protein complementing XP-A cells yes no 2 0.007955 32.606 By MS/MS By matching 1 1 0.95844 0.87561 38.086 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69133 0.66888 NaN 1 0 Median 1.3288 1.1462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1698200 995190 702970 0 0 0 0 0 0 1570400 943960 626400 127800 51231 76570 0 0 0 0 0 0 30678 990 32247 160363;160364 161313 161313 1 SLEYCSTASIDSENPPDLNK ELASLDCYNHLAEWKSLEYCSTASIDSENP STASIDSENPPDLNKIWSEPFYQETYLPYM K S L N K I 1 0 2 2 1 0 2 0 0 1 2 1 0 0 2 4 1 0 1 0 0 0 20 0 2238.9951 P78527 P78527 3010 3029 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.7737E-07 66.004 By MS/MS 2 0.64908 0.70232 1.9296 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64908 0.70232 1.9296 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7329300 4189200 3140100 0 0 0 0 0 0 7329300 4189200 3140100 0 0 0 0 0 0 0 0 0 30679 2647 32248 160365;160366 161314;161315 161314 2 SLEYLPLR VTKRQVILLHTELERSLEYLPLRFGV____ LHTELERSLEYLPLRFGV____________ R S L L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 0 1 1 0 0 1 0 0 0 8 0 989.55458 K7ESP4;Q8WVC6 K7ESP4 199 206 DCAKD Dephospho-CoA kinase domain-containing protein yes no 2 0.031575 58.981 By MS/MS 1 0.85263 0.80461 NaN 1 Median 0.85263 0.80461 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4665100 2503000 2162200 4665100 2503000 2162200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30680 1402 32249 160367 161316 161316 1 SLFDQGVK AHEICLQDIQLDPERSLFDQGVKTDGTVQL IQLDPERSLFDQGVKTDGTVQLSVQVISYQ R S L V K T 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 0 892.46543 Q06546 Q06546 80 87 GABPA GA-binding protein alpha chain yes yes 2 0.018519 47.849 By MS/MS 1 0.87582 0.75298 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87582 0.75298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1871800 900610 971190 0 0 0 0 0 0 0 0 0 1871800 900610 971190 0 0 0 0 0 0 30681 2726 32250 160368 161317 161317 1 SLFDYFLTDLK LAASVLVVSHGAYMRSLFDYFLTDLKCSLP AYMRSLFDYFLTDLKCSLPATLSRSELMSV R S L L K C 0 0 0 2 0 0 0 0 0 0 3 1 0 2 0 1 1 0 1 0 0 0 11 0 1360.6915 Q9NQ88;A0A0U1RQD1 Q9NQ88 204 214 TIGAR Fructose-2,6-bisphosphatase TIGAR yes no 2 0.0054074 46.158 By MS/MS 1 1.3239 1.1316 NaN 1 Median NaN NaN NaN 0 0 Median 1.3239 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 729800 300490 429320 0 0 0 729800 300490 429320 0 0 0 0 0 0 0 0 0 0 0 0 30682 4061 32251 160369 161318 161318 1 SLFDYHDTR AQFENYLQEELKIRRSLFDYHDTRIHVCLY ELKIRRSLFDYHDTRIHVCLYFITPTGHSL R S L T R I 0 1 0 2 0 0 0 0 1 0 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1152.52 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599;C9JV02;C9J4G8 A0A087X142 138 146 SEPT8 Septin-8 yes no 2 0.0029859 68.224 By MS/MS By MS/MS 1 1 1.1767 1.0889 8.5743 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0279 1.0249 NaN 1 0 Median 1.347 1.157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9037600 4518200 4519400 0 0 0 0 0 0 6647700 3477700 3170100 2389900 1040500 1349400 0 0 0 0 0 0 30683 118 32252 160370;160371 161319;161320;161321;161322 161320 4 SLFEASQQLLNEMK TKEKDQLSQSIVMYKSLFEASQQLLNEMKC KSLFEASQQLLNEMKCQVEEARLKEAQLRN K S L M K C 1 0 1 0 0 2 2 0 0 0 3 1 1 1 0 2 0 0 0 0 0 0 14 0 1636.8131 A6NHR9;J3KTL8 A6NHR9 1642 1655 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.012463 40.589 By MS/MS By MS/MS By matching By matching 1 3 1 1 0.95308 1.0563 20.013 6 Median NaN NaN NaN 0 0 Median 1.2424 1.1 NaN 1 0 Median 0.915 1.0566 6.1535 3 1 Plateau 1.2373 1.1165 NaN 1 0 Median 0.63995 0.66088 NaN 1 0 Median NaN NaN NaN 0 0 Median 19740000 9132300 10608000 0 0 0 2309200 1021000 1288200 16638000 7699400 8938600 449890 200920 248980 343050 211050 132000 0 0 0 30684 518 32253;32254 160372;160373;160374;160375;160376;160377 161323;161324;161325 161324 207 3 SLFENQNITVIPSGFR WQTYLKTCKAQAAPKSLFENQNITVIPSGF LFENQNITVIPSGFRVGMKLEAVDKKNPSF K S L F R V 0 1 2 0 0 1 1 1 0 2 1 0 0 2 1 2 1 0 0 1 0 0 16 0 1820.9421 Q96JM7 Q96JM7 357 372 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 yes yes 2 0.00011066 65.574 By MS/MS 1 0.71273 0.7603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71273 0.7603 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5443500 3056300 2387200 0 0 0 0 0 0 5443500 3056300 2387200 0 0 0 0 0 0 0 0 0 30685 3688 32255 160378 161326 161326 1 SLFEQYGK FIGNLPREATEQEIRSLFEQYGKVLECDII ATEQEIRSLFEQYGKVLECDIIKNYGFVHI R S L G K V 0 0 0 0 0 1 1 1 0 0 1 1 0 1 0 1 0 0 1 0 0 0 8 0 970.476 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 20 27 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.0048619 79.116 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 3 2 1.1358 1.0713 23.311 11 Median 0.96639 0.90255 NaN 1 1 Median 1.2818 1.0713 NaN 1 0 Median 0.94718 0.9415 20.519 2 0 Median 1.0996 0.92082 15.907 2 0 Median 1.1384 1.2005 22.887 3 0 Median 1.2417 1.0259 34.309 2 0 Median 42861000 20770000 22091000 5666800 2734500 2932200 478090 206780 271310 23185000 11687000 11498000 1439400 452360 987040 11223000 5244700 5978300 868300 444660 423640 30686 3870;3780 32256 160379;160380;160381;160382;160383;160384;160385;160386;160387;160388;160389 161327;161328;161329;161330;161331;161332;161333 161329 7 SLFETLPGR ALRNDSQDKQTQFLRSLFETLPGRVQCEML QTQFLRSLFETLPGRVQCEMLLKVTEQCFN R S L G R V 0 1 0 0 0 0 1 1 0 0 2 0 0 1 1 1 1 0 0 0 0 0 9 0 1018.5447 Q9NVR2 Q9NVR2 101 109 INTS10 Integrator complex subunit 10 yes yes 2 0.0047475 75.109 By MS/MS 1 0.87534 0.90469 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87534 0.90469 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6373500 3044100 3329400 0 0 0 0 0 0 6373500 3044100 3329400 0 0 0 0 0 0 0 0 0 30687 4139 32257 160390 161334 161334 1 SLFGHTVGGAAGVVSR QGPEEFAEGLVIGVRSLFGHTVGGAAGVVS LFGHTVGGAAGVVSRITGSVGKGLAAITMD R S L S R I 2 1 0 0 0 0 0 4 1 0 1 0 0 1 0 2 1 0 0 3 0 0 16 0 1513.8001 Q709C8;A0A3B3IU50 Q709C8 3465 3480 VPS13C Vacuolar protein sorting-associated protein 13C yes no 3 6.0764E-08 97.073 By MS/MS By MS/MS 1 1 0.98043 0.87757 16.461 2 Median 0.80221 0.78114 NaN 1 0 Median 1.1982 0.98589 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26021000 13582000 12439000 18013000 10219000 7794500 8008100 3363100 4645000 0 0 0 0 0 0 0 0 0 0 0 0 30688 3205 32258 160391;160392 161335;161336 161335 2 SLFGQLHPPDEGHGD DHTTMNDDARTELYRSLFGQLHPPDEGHGD SLFGQLHPPDEGHGD_______________ R S L G D - 0 0 0 2 0 1 1 3 2 0 2 0 0 1 2 1 0 0 0 0 0 0 15 0 1604.7219 Q9NY61;A0A087WTH8 Q9NY61 546 560 AATF Protein AATF yes no 3 0.027962 27.335 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6967100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6967100 0 0 0 0 0 30689 4172 32259 160393 161337 161337 1 SLFLGQK TEGTPADGFTVLSTKSLFLGQKLNLIHSEI GFTVLSTKSLFLGQKLNLIHSEISNLAGFE K S L Q K L 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 7 0 791.45414 O75367 O75367 190 196 H2AFY Core histone macro-H2A.1 yes yes 2 0.0045095 105.42 By MS/MS By MS/MS 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51402000 0 51402000 0 0 0 0 0 0 0 0 0 0 0 0 40877000 0 40877000 10525000 0 10525000 30690 1662 32260 160394;160395;160396 161338;161339;161340;161341 161338 4 SLFNNAER PLVLSCLVQIASVRRSLFNNAERAKFLSHL QIASVRRSLFNNAERAKFLSHLVDGVKRIL R S L E R A 1 1 2 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 8 0 949.46174 E7ESC6;Q9UIA9 E7ESC6 294 301 XPO7 Exportin-7 yes no 2 0.0046696 80.229 By MS/MS 1 1.2687 1.0622 NaN 1 Median NaN NaN NaN 0 0 Median 1.2687 1.0622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9411300 3954900 5456400 0 0 0 9411300 3954900 5456400 0 0 0 0 0 0 0 0 0 0 0 0 30691 885 32261 160397 161342 161342 1 SLFNYHDTR AQFEAYLQEELKIKRSLFNYHDTRIHACLY ELKIKRSLFNYHDTRIHACLYFIAPTGHSL R S L T R I 0 1 1 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1151.536 D6RGI3;D6RER5;Q9NVA2;D6RDU5 D6RGI3 138 146 SEPT11 Septin-11 yes no 2 0.00039188 134.05 By MS/MS By MS/MS 2 2 1.4297 1.2367 11.112 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2912 1.3081 18.406 2 1 Median 1.4421 1.2367 0.35652 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73139000 32372000 40767000 0 0 0 0 0 0 29888000 13643000 16245000 43251000 18729000 24522000 0 0 0 0 0 0 30692 822 32262 160398;160399;160400;160401 161343;161344;161345;161346;161347;161348;161349 161347 7 SLFSNVVTK GLHLSQKRNNGVVDKSLFSNVVTKNKDLPE NGVVDKSLFSNVVTKNKDLPESALRDLIVA K S L T K N 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 2 1 0 0 2 0 0 9 0 993.5495 P31939;H7C1S2 P31939 398 406 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.01801 56.729 By MS/MS 2 1.0904 1.0096 NaN 1 Median 1.0904 1.0096 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58417000 27065000 31351000 58417000 27065000 31351000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30693 2207 32263 160402;160403 161350;161351 161350 2 SLFSPQNTLAAPTGHPPTSGVEK PQKQYPDSPHPVPHRSLFSPQNTLAAPTGH LAAPTGHPPTSGVEKVLASTISTTSTIEFK R S L E K V 2 0 1 0 0 1 1 2 1 0 2 1 0 1 4 3 3 0 0 1 0 0 23 0 2335.1808 Q5VT52 Q5VT52 973 995 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 3.9423E-06 38.583 By matching By MS/MS 1 1 0.38227 0.40825 33.255 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29607 0.32271 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49356 0.51648 NaN 1 0 Median NaN NaN NaN 0 0 Median 19508000 13947000 5560900 0 0 0 0 0 0 12426000 8942000 3484000 0 0 0 7082000 5005100 2076900 0 0 0 30694 3110 32264 160404;160405 161352 161352 1 SLFSSIGEVESAK IVNYLPQNMTQDELRSLFSSIGEVESAKLI LRSLFSSIGEVESAKLIRDKVAGHSLGYGF R S L A K L 1 0 0 0 0 0 2 1 0 1 1 1 0 1 0 4 0 0 0 1 0 0 13 0 1352.6824 Q15717;M0QZR9 Q15717 38 50 ELAVL1 ELAV-like protein 1 yes no 2 4.3111E-07 115.18 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 3 1 1.0481 0.95491 38.414 11 Median 1.2963 1.1914 NaN 1 1 Median 0.9794 0.8215 NaN 1 0 Median 1.0535 1.0163 23.289 3 0 Plateau 1.7477 1.4571 49.878 2 0 Median 1.0481 1.0567 47.677 3 1 Plateau 1.1663 0.93449 NaN 1 0 Median 430360000 204580000 225780000 13363000 6264300 7098700 20886000 10110000 10776000 50679000 25144000 25535000 3701800 1586400 2115500 294390000 139600000 154790000 47338000 21878000 25460000 30695 2964 32265 160406;160407;160408;160409;160410;160411;160412;160413;160414;160415;160416 161353;161354;161355;161356;161357;161358;161359;161360;161361;161362;161363;161364;161365;161366;161367 161359 15 SLFSTTPLTTDDGVLLR PSANVLPTLPFHVLRSLFSTTPLTTDDGVL FSTTPLTTDDGVLLRRMALEIGALHLILVC R S L L R R 0 1 0 2 0 0 0 1 0 0 4 0 0 1 1 2 4 0 0 1 0 0 17 0 1834.9676 Q9NR09 Q9NR09 4219 4235 BIRC6 Baculoviral IAP repeat-containing protein 6 yes yes 2 2.1089E-05 63.727 By MS/MS By matching 1 1 1.1831 1.0974 19.173 2 Median 0.94788 0.95826 NaN 1 0 Median 1.4767 1.2567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4305100 2222300 2082800 3133200 1668200 1465000 1171900 554170 617780 0 0 0 0 0 0 0 0 0 0 0 0 30696 4073 32266 160417;160418 161368;161369 161368 2 SLFTDVVAEK TVTVSASLESVRENRSLFTDVVAEKDLFHC VRENRSLFTDVVAEKDLFHCVSFTLPRSPT R S L E K D 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 2 0 0 10 0 1107.5812 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 72 81 yes yes 2 0.029426 47.603 By MS/MS 1 0.15904 0.13867 NaN 1 Median NaN NaN NaN 0 0 Median 0.15904 0.13867 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4123900 3268400 855510 0 0 0 4123900 3268400 855510 0 0 0 0 0 0 0 0 0 0 0 0 + 30697 734 32267 160419 161370 161370 1 SLFTYHDSR AQFEAYLQEELKIKRSLFTYHDSRIHVCLY ELKIKRSLFTYHDSRIHVCLYFISPTGHSL R S L S R I 0 1 0 1 0 0 0 0 1 0 1 0 0 1 0 2 1 0 1 0 0 0 9 0 1124.5251 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 163 171 SEPT10 Septin-10 yes no 2 0.0005315 117.04 By MS/MS By MS/MS 1 1 1.0025 0.9295 12.06 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0094 1.0122 NaN 1 0 Median 0.99558 0.85352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9638900 5166100 4472800 0 0 0 0 0 0 5510900 2908400 2602500 4128000 2257700 1870300 0 0 0 0 0 0 30698 626 32268 160420;160421 161371;161372;161373;161374 161373 4 SLFVGHMDYK TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ AFTTKSLFVGHMDYKYLRWQVVDTPGILDH K S L Y K Y 0 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 0 0 1 1 0 0 10 0 1195.5696 Q9BZE4 Q9BZE4 204 213 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2;3 0.0039357 54.982 By MS/MS 3 1.3691 1.3458 18.016 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3691 1.3458 18.016 2 0 Median NaN NaN NaN 0 0 Median 34275000 13276000 21000000 0 0 0 0 0 0 0 0 0 0 0 0 34275000 13276000 21000000 0 0 0 30699 3898 32269 160422;160423;160424 161375;161376 161375 2 SLFVVVGDR RIRILIENGVAERQRSLFVVVGDRGKDQVV VAERQRSLFVVVGDRGKDQVVILHHMLSKA R S L D R G 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 3 0 0 9 0 990.54983 Q9H0A0;E9PMU0;E9PJN6 Q9H0A0 24 32 NAT10 N-acetyltransferase 10 yes no 2 0.0008527 94.302 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 4 1.2407 1.1494 15.225 9 Median NaN NaN NaN 0 0 Median 1.2119 1.0618 NaN 1 0 Median 1.0621 1.151 0.19471 2 0 Median 1.3031 1.1126 NaN 1 0 Median 1.2407 1.3127 NaN 1 0 Median 1.4328 1.2218 21.583 4 0 Median 17333000 7989000 9343800 0 0 0 1087800 444580 643230 11516000 5575900 5940300 897470 388490 508980 3030700 1246900 1783800 800640 333130 467510 30700 3921 32270 160425;160426;160427;160428;160429;160430;160431;160432;160433 161377;161378;161379;161380;161381;161382;161383;161384 161378 8 SLGAEHVITEEELR VRDRPDIQKLSDRLKSLGAEHVITEEELRR KSLGAEHVITEEELRRPEMKNFFKDMPQPR K S L L R R 1 1 0 0 0 0 4 1 1 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1581.7999 H3BM30;Q9BV79 H3BM30 103 116 MECR Trans-2-enoyl-CoA reductase, mitochondrial yes no 3 0.00045763 58.831 By MS/MS By MS/MS 1 2 0.84856 0.83604 31.579 3 Plateau 0.47765 0.48227 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8423 0.83013 5.3096 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15473000 8088200 7384400 1885200 1107100 778120 0 0 0 13587000 6981100 6606300 0 0 0 0 0 0 0 0 0 30701 1208 32271 160434;160435;160436 161385;161386;161387 161387 3 SLGAEPLEVDLK VRGFDTRAAALEQFKSLGAEPLEVDLKESG QFKSLGAEPLEVDLKESGEGQGGYAKEMSK K S L L K E 1 0 0 1 0 0 2 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 12 0 1269.6816 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 268 279 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 4.7077E-06 102.52 By MS/MS By MS/MS 2 1 0.74908 0.75201 158.86 3 Median 0.21825 0.21361 177.99 2 1 Median 1.2841 1.1448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120310000 85166000 35144000 96236000 76049000 20187000 24073000 9116500 14957000 0 0 0 0 0 0 0 0 0 0 0 0 30702 2814 32272 160437;160438;160439 161388;161389;161390;161391 161388 4 SLGAEPLEVDLKESGEGQGGYAK VRGFDTRAAALEQFKSLGAEPLEVDLKESG VDLKESGEGQGGYAKEMSKEFIEAEMKLFA K S L A K E 2 0 0 1 0 1 4 5 0 0 3 2 0 0 1 2 0 0 1 1 0 0 23 1 2333.1387 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 268 290 NNT NAD(P) transhydrogenase, mitochondrial yes no 2;3 2.7965E-47 183.41 By MS/MS By MS/MS 3 1 0.689 0.75027 22.536 4 Median 0.68764 0.74945 9.8372 3 0 Median 1.1323 1.0801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75963000 44427000 31535000 67979000 40907000 27072000 7983400 3520200 4463200 0 0 0 0 0 0 0 0 0 0 0 0 30703 2814 32273 160440;160441;160442;160443 161392;161393;161394;161395;161396;161397 161394 6 SLGDDISSETSGDFRK QMKDISQAYYTVYKKSLGDDISSETSGDFR LGDDISSETSGDFRKALLTLADGRRDESLK K S L R K A 0 1 0 3 0 0 1 2 0 1 1 1 0 1 0 4 1 0 0 0 0 0 16 1 1712.7853 P12429;D6RA82;D6RFG5 P12429 139 154 ANXA3 Annexin A3;Annexin yes no 3 0.054659 16.88 By MS/MS 1 1.835 1.6566 NaN 1 Median NaN NaN NaN 0 0 Median 1.835 1.6566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3133200 1237400 1895800 0 0 0 3133200 1237400 1895800 0 0 0 0 0 0 0 0 0 0 0 0 30704 1981 32274 160444 161398 161398 0 SLGEIPIVESEIKK STKEDIQSVMTEIRRSLGEIPIVESEIKKE RSLGEIPIVESEIKKEAGELKPEEEITVGP R S L K K E 0 0 0 0 0 0 3 1 0 3 1 2 0 0 1 2 0 0 0 1 0 0 14 1 1540.8712 P53618 P53618 482 495 COPB1 Coatomer subunit beta yes yes 2;3 0.00012354 83.182 By MS/MS By matching By matching By matching 2 3 1 1 0.89852 0.87014 19.368 7 Median 0.86689 0.90761 5.9621 2 0 Median 0.89852 0.85247 27.185 3 0 Median 0.95245 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83718 0.76084 NaN 1 0 Median 32779000 17672000 15107000 24808000 12884000 11924000 2609700 1369800 1239900 4999300 3231400 1767900 0 0 0 0 0 0 362000 186380 175630 30705 2472 32275 160445;160446;160447;160448;160449;160450;160451 161399;161400;161401 161401 3 SLGEISALTSK AELCDDPKERDDILRSLGEISALTSKLADL DILRSLGEISALTSKLADLRRQGKGDSPEA R S L S K L 1 0 0 0 0 0 1 1 0 1 2 1 0 0 0 3 1 0 0 0 0 0 11 0 1104.6027 P18206 P18206 434 444 VCL Vinculin yes yes 2 0.00013804 87.258 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1.0323 0.92653 18.693 9 Median 1.002 0.9535 4.0584 2 0 Median 1.0183 0.87498 6.0518 2 0 Median 1.0389 1.1555 19.434 2 0 Median 0.82216 0.77001 16.89 2 0 Median NaN NaN NaN 0 0 Median 1.3489 1.1277 NaN 1 0 Median 81571000 39820000 41751000 39148000 19419000 19729000 34175000 16512000 17663000 5991300 2791000 3200400 1906600 943200 963440 0 0 0 349800 155080 194720 30706 2057 32276 160452;160453;160454;160455;160456;160457;160458;160459;160460 161402;161403;161404;161405 161404 4 SLGETQLVLYGDVEELKR GSSEADQDGLASTVRSLGETQLVLYGDVEE ETQLVLYGDVEELKRSVGELPSTVESLQKV R S L K R S 0 1 0 1 0 1 3 2 0 0 4 1 0 0 0 1 1 0 1 2 0 0 18 1 2048.079 Q07065 Q07065 474 491 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 3.6953E-08 83.758 By MS/MS By MS/MS By matching 2 2 1 1.5615 1.4193 30.618 5 Median 0.98447 0.98524 5.9565 2 1 Median 1.7408 1.5867 15.769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0031 1.8402 NaN 1 0 Median 151440000 68757000 82684000 129000000 60519000 68480000 21799000 8048500 13751000 0 0 0 0 0 0 0 0 0 642130 189600 452530 30707 2730 32277 160461;160462;160463;160464;160465 161406;161407;161408;161409;161410;161411 161408 6 SLGGDVASDGDFLIFEGNR FKRPPQRLFDAEKIRSLGGDVASDGDFLIF DVASDGDFLIFEGNRYSRKGFLFKSFAMSA R S L N R Y 1 1 1 3 0 0 1 4 0 1 2 0 0 2 0 2 0 0 0 1 0 0 19 0 1967.9225 O00267 O00267 347 365 SUPT5H Transcription elongation factor SPT5 yes yes 2 1.1346E-07 71.607 By matching By MS/MS 1 1 0.69347 0.68071 35.306 2 Median NaN NaN NaN 0 0 Median 0.60453 0.53033 NaN 1 0 Median 0.79549 0.87375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3549500 1934600 1614900 0 0 0 309060 147380 161680 3240500 1787200 1453300 0 0 0 0 0 0 0 0 0 30708 1452 32278 160466;160467 161412;161413 161413 2 SLGGNDELSATFLEMK RELLQSFDSALQSVKSLGGNDELSATFLEM LGGNDELSATFLEMKGHFYMHAGSLLLKMG K S L M K G 1 0 1 1 0 0 2 2 0 0 3 1 1 1 0 2 1 0 0 0 0 0 16 0 1710.8135 P49792 P49792 271 286 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.6229E-07 87.363 By matching By MS/MS By matching 2 5 3 1.0593 1.0703 48.052 10 Median 0.72884 0.74133 50.812 2 0 Median NaN NaN NaN 0 0 Median 0.99285 1.0676 61.943 5 2 Median 1.3539 1.2053 7.536 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33837000 17738000 16099000 3267700 1721400 1546300 0 0 0 29729000 15642000 14087000 840130 374510 465620 0 0 0 0 0 0 30709 2401 32279;32280 160468;160469;160470;160471;160472;160473;160474;160475;160476;160477 161414;161415;161416;161417;161418;161419 161419 1118 6 SLGHGLINK GTLQSFSTVHEKFNKSLGHGLINKKRVKRK HEKFNKSLGHGLINKKRVKRKGLQNTMSVR K S L N K K 0 0 1 0 0 0 0 2 1 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 937.53451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 361 369 WDR36 WD repeat-containing protein 36 yes no 2 0.023984 37.974 By MS/MS By MS/MS By matching 1 1 1 1.2455 1.3193 11.761 3 Median NaN NaN NaN 0 0 Median 1.2455 1.0911 NaN 1 0 Median 1.21 1.3193 NaN 1 0 Median 1.5557 1.353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5318100 2276000 3042100 0 0 0 1869700 772390 1097300 2509600 1141500 1368100 938770 362110 576670 0 0 0 0 0 0 30710 188 32281 160478;160479;160480 161420;161421 161421 2 SLGLPIAASSEGHR QLAKEKPDEYVSSSRSLGLPIAASSEGHRL RSLGLPIAASSEGHRLPGHGPLSSSAPGAS R S L H R L 2 1 0 0 0 0 1 2 1 1 2 0 0 0 1 3 0 0 0 0 0 0 14 0 1393.7314 A0A087WWH3;Q9NZM4 A0A087WWH3 1155 1168 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein yes no 3 0.00061616 57.804 By MS/MS 1 0.61778 0.68598 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61778 0.68598 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3008600 1861100 1147500 0 0 0 0 0 0 3008600 1861100 1147500 0 0 0 0 0 0 0 0 0 30711 59 32282 160481 161422 161422 1 SLGLQLPDGQR YGNKFGEPVLAGFARSLGLQLPDGQRREWI GFARSLGLQLPDGQRREWIKPIMFSGGIGS R S L Q R R 0 1 0 1 0 2 0 2 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 0 1182.6357 O15067 O15067 407 417 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.0048509 47.198 By matching By MS/MS 1 2 0.95544 0.80796 17.183 3 Median 0.79798 0.77161 NaN 1 0 Median 1.012 0.92563 19.228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9272900 5121700 4151200 4640500 2629900 2010600 4632400 2491800 2140600 0 0 0 0 0 0 0 0 0 0 0 0 30712 1518 32283 160482;160483;160484 161423 161423 1 SLGLSDEEIVK AAKAGSSKYQWGIMKSLGLSDEEIVKFSEA GIMKSLGLSDEEIVKFSEAEHWLDYFPPLA K S L V K F 0 0 0 1 0 0 2 1 0 1 2 1 0 0 0 2 0 0 0 1 0 0 11 0 1188.6238 Q9P2J5 Q9P2J5 163 173 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0046341 47.603 By MS/MS 1 1.2388 1.0439 NaN 1 Median NaN NaN NaN 0 0 Median 1.2388 1.0439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22510000 9729400 12780000 0 0 0 22510000 9729400 12780000 0 0 0 0 0 0 0 0 0 0 0 0 30713 4224 32284 160485 161424;161425 161425 2 SLGLSLSGGDQEDAGR RAKRKAGVDPLVPLRSLGLSLSGGDQEDAG LGLSLSGGDQEDAGRILIEELRDRFPYLSE R S L G R I 1 1 0 2 0 1 1 4 0 0 3 0 0 0 0 3 0 0 0 0 0 0 16 0 1560.738 H7C3G9;Q9UJ70;C9JEV6;H7C1L7;H0YE82;H0YEB7 H7C3G9 70 85 NAGK N-acetyl-D-glucosamine kinase yes no 2 0.00028884 48.741 By matching By MS/MS By matching 2 1 1 1.0367 0.93715 31.039 4 Median 0.80103 0.82993 10.38 2 0 Median 1.1606 0.98333 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8764 1.5807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5301700 2516000 2785800 4051100 1963100 2088000 1114700 502100 612630 0 0 0 135910 50783 85128 0 0 0 0 0 0 30714 1265 32285 160486;160487;160488;160489 161426 161426 1 SLGNILQAK SDGEVPTAVAPAQEKSLGNILQAKPTSSPA APAQEKSLGNILQAKPTSSPAKGPPQKAGP K S L A K P 1 0 1 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 942.54983 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 571 579 TCOF1 Treacle protein no no 2 0.0055515 57.281 By matching By matching By MS/MS 1 1 2 1.3179 1.2214 10.793 4 Median NaN NaN NaN 0 0 Median 1.5366 1.3905 NaN 1 0 Median 1.1043 1.2296 NaN 1 0 Median 1.3179 1.1382 9.0196 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8619600 3870300 4749300 0 0 0 406660 166240 240410 5659900 2554200 3105700 2553100 1149900 1403200 0 0 0 0 0 0 30715 2816;891 32286 160490;160491;160492;160493 161427;161428 161427 2 SLGNILQAKPTSSPAK SDGEVPTAVAPAQEKSLGNILQAKPTSSPA LGNILQAKPTSSPAKGPPQKAGPVAVQVKA K S L A K G 2 0 1 0 0 1 0 1 0 1 2 2 0 0 2 3 1 0 0 0 0 0 16 1 1610.8992 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 571 586 TCOF1 Treacle protein no no 2;3 3.2807E-105 226.42 By MS/MS By MS/MS 4 6 0.8533 0.9302 14.717 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85281 0.99301 5.2211 4 2 Linear 0.92073 0.86909 19.282 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129440000 70207000 59238000 0 0 0 0 0 0 111290000 60850000 50443000 18152000 9356800 8795200 0 0 0 0 0 0 30716 2816;891 32287 160494;160495;160496;160497;160498;160499;160500;160501;160502;160503 161429;161430;161431;161432;161433 161429 5 SLGNVIHPDVVVNGGQDQSK VHGFTLGEKGEKMSKSLGNVIHPDVVVNGG IHPDVVVNGGQDQSKEPPYGADVLRWWVAD K S L S K E 0 0 2 2 0 2 0 3 1 1 1 1 0 0 1 2 0 0 0 4 0 0 20 0 2062.0443 Q9NSE4 Q9NSE4 668 687 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3 0.015413 17.595 By MS/MS 1 1.2632 1.0902 NaN 1 Median NaN NaN NaN 0 0 Median 1.2632 1.0902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3658200 1753300 1904900 0 0 0 3658200 1753300 1904900 0 0 0 0 0 0 0 0 0 0 0 0 30717 4103 32288 160504 161434 161434 1 SLGPLHAAAAAAAPR VAGMGSLTGIADAAKSLGPLHAAAAAAAPR SLGPLHAAAAAAAPRRKRRVLFSQAQVYEL K S L P R R 7 1 0 0 0 0 0 1 1 0 2 0 0 0 2 1 0 0 0 0 0 0 15 0 1372.7575 Q9H2Z4 Q9H2Z4 175 189 NKX2-4 Homeobox protein Nkx-2.4 yes yes 3 0.0056013 39.005 By MS/MS 1 0.5165 0.55959 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5165 0.55959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3905300 2685700 1219600 0 0 0 0 0 0 3905300 2685700 1219600 0 0 0 0 0 0 0 0 0 30718 3949 32289 160505 161435 161435 1 SLGPPQGEEDSVPR ECMAPLTALVKHMHRSLGPPQGEEDSVPRD RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN R S L P R D 0 1 0 1 0 1 2 2 0 0 1 0 0 0 3 2 0 0 0 1 0 0 14 0 1466.7001 P78527 P78527 2107 2120 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.2126E-34 170.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 1 4 0.55968 0.55881 25.978 15 Median 0.55702 0.53604 3.4812 4 4 Median 0.85522 0.70542 4.7441 2 0 Median 0.51763 0.5493 3.6423 2 0 Median 0.87511 0.76778 2.6958 2 0 Median 0.50349 0.51535 NaN 1 0 Median 0.90659 0.74596 43.913 4 0 Linear 622980000 377890000 245100000 215160000 137340000 77820000 120920000 62507000 58416000 215330000 138800000 76525000 45890000 23476000 22413000 16069000 10450000 5619100 9620300 5317400 4302900 30719 2647 32290 160506;160507;160508;160509;160510;160511;160512;160513;160514;160515;160516;160517;160518;160519;160520 161436;161437;161438;161439;161440;161441;161442;161443;161444;161445;161446;161447;161448;161449;161450;161451;161452;161453;161454;161455;161456;161457;161458;161459;161460;161461;161462;161463 161436 28 SLGPSLATDKS EGTNKDFPQNAIRQRSLGPSLATDKS____ IRQRSLGPSLATDKS_______________ R S L K S - 1 0 0 1 0 0 0 1 0 0 2 1 0 0 1 3 1 0 0 0 0 0 11 1 1074.5557 Q9H3N1 Q9H3N1 270 280 TMX1 Thioredoxin-related transmembrane protein 1 yes yes 2 0.0003009 98.943 By MS/MS By MS/MS 1 2 1.0145 0.94288 25.517 3 Plateau 1.0145 0.94288 NaN 1 0 Median 0.8084 0.68302 24.681 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14450000 7246600 7203200 9286200 4514100 4772100 5163500 2732500 2431000 0 0 0 0 0 0 0 0 0 0 0 0 30720 3956 32291 160521;160522;160523 161464;161465 161464 2 SLGSVQAPSYGAR ______________________________ YRSLGSVQAPSYGARPVSSAASVYAGAGGS R S L A R P 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 3 0 0 1 1 0 0 13 0 1291.6521 P05783;F8VZY9 P05783 15 27 KRT18 Keratin, type I cytoskeletal 18 yes no 2 5.0664E-31 211.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 5 5 9 8 1.0674 0.9521 20.57 36 Median 0.90459 0.86462 12.153 6 2 Median 1.1999 1.0244 9.4352 4 1 Median 1.0708 1.0263 31.914 5 0 Median 1.0398 0.8556 10.21 5 0 Median 1.1509 1.1628 6.8648 8 3 Median 1.0376 0.83939 7.7146 8 0 Median 2100000000 1015400000 1084600000 157830000 79544000 78289000 107880000 48760000 59118000 755630000 369430000 386200000 559390000 271240000 288150000 267020000 120180000 146830000 252270000 126230000 126040000 30721 1869 32292 160524;160525;160526;160527;160528;160529;160530;160531;160532;160533;160534;160535;160536;160537;160538;160539;160540;160541;160542;160543;160544;160545;160546;160547;160548;160549;160550;160551;160552;160553;160554;160555;160556;160557;160558;160559;160560 161466;161467;161468;161469;161470;161471;161472;161473;161474;161475;161476;161477;161478;161479;161480;161481;161482;161483;161484;161485;161486;161487;161488;161489;161490;161491;161492;161493;161494;161495;161496;161497;161498;161499;161500;161501;161502;161503;161504;161505;161506;161507;161508;161509;161510;161511;161512;161513;161514;161515;161516;161517;161518;161519;161520;161521;161522;161523;161524;161525;161526;161527;161528;161529;161530;161531;161532;161533;161534;161535;161536;161537;161538;161539;161540;161541 161474 76 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR ______________________________ SAASVYAGAGGSGSRISVSRSTSFRGGMGS R S L S R I 6 2 0 0 0 1 0 6 0 0 1 0 0 0 2 8 0 0 2 3 0 0 31 1 2853.4005 P05783;F8VZY9 P05783 15 45 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3;4 1.9061E-64 163.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 8 1 0.95481 1.0273 14.231 16 Median 1.035 1.0668 17.457 4 0 Median NaN NaN NaN 0 0 Median 0.99307 1.0752 NaN 1 0 Median 0.90059 0.82306 4.741 2 0 Median 0.95481 1.0273 5.952 8 1 Median 0.84144 0.74392 NaN 1 0 Median 627910000 303360000 324550000 114510000 59107000 55406000 0 0 0 10487000 4556200 5930500 44814000 22187000 22627000 438600000 207460000 231140000 19499000 10052000 9446900 30722 1869 32293 160561;160562;160563;160564;160565;160566;160567;160568;160569;160570;160571;160572;160573;160574;160575;160576 161542;161543;161544;161545;161546;161547;161548;161549;161550;161551;161552;161553;161554;161555;161556;161557;161558;161559;161560;161561;161562;161563;161564;161565;161566 161564 25 SLGTADVHFER GTLKKAAVHYDRSGRSLGTADVHFERKADA RSGRSLGTADVHFERKADALKAMKQYNGVP R S L E R K 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1230.5993 Q86V81;E9PB61 Q86V81 145 155 ALYREF THO complex subunit 4 yes no 2;3 3.2073E-05 138.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 5 10 7 1.2695 1.145 12.019 32 Median 1.2985 1.2347 9.3455 3 0 Median 1.4472 1.2032 16.708 3 0 Median 1.1074 1.1005 7.1986 5 0 Median 1.4327 1.1961 6.9967 5 0 Median 1.1228 1.1208 13.251 9 0 Median 1.403 1.1006 13.135 7 0 Median 1274700000 542590000 732080000 69482000 28063000 41420000 72084000 29391000 42693000 462280000 208520000 253770000 257230000 104150000 153080000 293210000 123800000 169410000 120380000 48667000 71714000 30723 3286 32294 160577;160578;160579;160580;160581;160582;160583;160584;160585;160586;160587;160588;160589;160590;160591;160592;160593;160594;160595;160596;160597;160598;160599;160600;160601;160602;160603;160604;160605;160606;160607;160608;160609 161567;161568;161569;161570;161571;161572;161573;161574;161575;161576;161577;161578;161579;161580;161581;161582;161583;161584;161585;161586;161587;161588;161589;161590;161591;161592;161593;161594;161595;161596;161597;161598;161599;161600;161601;161602;161603;161604;161605;161606;161607;161608;161609;161610;161611;161612;161613;161614;161615;161616;161617;161618;161619;161620;161621;161622;161623;161624;161625 161604 58 SLGTADVHFERK GTLKKAAVHYDRSGRSLGTADVHFERKADA SGRSLGTADVHFERKADALKAMKQYNGVPL R S L R K A 1 1 0 1 0 0 1 1 1 0 1 1 0 1 0 1 1 0 0 1 0 0 12 1 1358.6943 Q86V81;E9PB61 Q86V81 145 156 ALYREF THO complex subunit 4 yes no 3 0.00014182 72.089 By matching By matching By matching By MS/MS By MS/MS 2 2 1 1 1 1.1959 1.1484 20.319 7 Median 0.94518 0.90559 31.332 2 0 Median 1.2638 1.0683 16.888 2 0 Median 1.1284 1.1484 NaN 1 0 Median 1.3621 1.2854 NaN 1 0 Median 1.1959 1.2638 NaN 1 0 Median NaN NaN NaN 0 0 Median 31661000 14540000 17121000 11456000 5450200 6005400 12965000 6058900 6906500 1536700 841370 695370 2178000 963450 1214500 3525500 1226000 2299500 0 0 0 30724 3286 32295 160610;160611;160612;160613;160614;160615;160616 161626;161627;161628 161628 3 SLGTDLMNEMR MDLSYSMKDDLENVKSLGTDLMNEMRRITS ENVKSLGTDLMNEMRRITSDFRIGFGSFVE K S L M R R 0 1 1 1 0 0 1 1 0 0 2 0 2 0 0 1 1 0 0 0 0 0 11 0 1265.5744 P05556 P05556 164 174 ITGB1 Integrin beta-1 yes yes 2 0.00029355 72.643 By MS/MS By MS/MS By matching 2 2 1 1.1225 1.0315 10.355 5 Median 0.99628 0.96617 9.2531 2 0 Median 1.2373 1.0626 4.8509 2 0 Median 1.1225 1.2001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35732000 16571000 19160000 23955000 11412000 12543000 10606000 4642000 5963900 1170400 517470 652920 0 0 0 0 0 0 0 0 0 30725 1868 32296 160617;160618;160619;160620;160621 161629;161630;161631;161632;161633 161629 5 SLGTGAPVIESPYGETISPEDAPESISK RVDNAASEKNKEELKSLGTGAPVIESPYGE GETISPEDAPESISKAVASLPPEQMFELMK K S L S K A 2 0 0 1 0 0 4 3 0 3 1 1 0 0 4 5 2 0 1 1 0 0 28 0 2830.376 P33240;E7EWR4;E9PID8;A0A0A0MT56 P33240 103 130 CSTF2 Cleavage stimulation factor subunit 2 yes no 2;3 7.3545E-14 63.337 By MS/MS By matching 2 1 0.49932 0.49801 19.36 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47835 0.4923 1.6291 2 1 Median 0.80482 0.68803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26849000 17934000 8915800 0 0 0 0 0 0 26646000 17825000 8821800 203040 108960 94082 0 0 0 0 0 0 30726 2222 32297 160622;160623;160624 161634;161635;161636 161634 3 SLGTIQQCCDAIDHLCR VIYMESLALAHADEKSLGTIQQCCDAIDHL GTIQQCCDAIDHLCRIIEKKHVSLNKAKKR K S L C R I 1 1 0 2 3 2 0 1 1 2 2 0 0 0 0 1 1 0 0 0 0 0 17 0 2045.9081 P78527 P78527 1120 1136 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 2.8392E-12 109.79 By MS/MS By MS/MS By matching 1 1 1 1.3634 1.4303 17.501 3 Median NaN NaN NaN 0 0 Median 2.0535 1.6772 NaN 1 1 Median 1.3612 1.4303 NaN 1 0 Median 1.3634 1.1824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28234000 11315000 16919000 0 0 0 9116500 2937500 6179100 18805000 8227000 10578000 312590 150290 162300 0 0 0 0 0 0 30727 2647 32298 160625;160626;160627 161637;161638;161639 161638 3 SLGTRPPHVFAIADK PKIYSSEAIKSYQGKSLGTRPPHVFAIADK SLGTRPPHVFAIADKAFRDMKVLKMSQSII K S L D K A 2 1 0 1 0 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 0 0 15 1 1607.8784 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 119 133 MYO6 Unconventional myosin-VI yes no 3 0.0002335 46.68 By MS/MS 1 1.119 1.1659 NaN 1 Median 1.119 1.1659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10926000 5424800 5501500 10926000 5424800 5501500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30728 164 32299 160628 161640;161641 161641 2 SLGVDMDDKDDAHYAVQAR TAKKVQRTVLEKEMRSLGVDMDDKDDAHYA DMDDKDDAHYAVQARRSRSITRKRKREDSA R S L A R R 3 1 0 5 0 1 0 1 1 0 1 1 1 0 0 1 0 0 1 2 0 0 19 1 2104.9484 Q9BZE4 Q9BZE4 526 544 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2;3;4 7.2844E-14 102.36 By MS/MS By matching 5 1 1.2032 1.3233 19.183 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1064 1.2169 17.35 5 1 Median 2.0086 1.7626 NaN 1 0 Median 49444000 20416000 29028000 0 0 0 0 0 0 0 0 0 0 0 0 48738000 20159000 28579000 705610 256590 449010 30729 3898 32300;32301 160629;160630;160631;160632;160633;160634 161642;161643;161644;161645;161646;161647 161647 1846 6 SLGVGYAAVDNPIFYKPNTAMLLGDAK VLEVWKSKQVIVMKRSLGVGYAAVDNPIFY IFYKPNTAMLLGDAKKTCDALQAKVRESYQ R S L A K K 4 0 2 2 0 0 0 3 0 1 3 2 1 1 2 1 1 0 2 2 0 0 27 1 2824.447 Q13423;E9PCX7;A0A590UK15 Q13423 1044 1070 NNT NAD(P) transhydrogenase, mitochondrial yes no 3 0.0046209 23.74 By MS/MS By matching 2 2 0.73267 0.72234 37.477 4 Median 0.5027 0.52226 2.4924 2 0 Median 1.0352 0.9986 2.4261 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12132000 7168400 4963300 7963000 5192900 2770100 4168800 1975500 2193200 0 0 0 0 0 0 0 0 0 0 0 0 30730 2814 32302 160635;160636;160637;160638 161648;161649;161650;161651 161651 4 SLGVLPFTLNSGSPEK SVKKAVESKSRHRSRSLGVLPFTLNSGSPE LGVLPFTLNSGSPEKTCSQVSSYSLEQESN R S L E K T 0 0 1 0 0 0 1 2 0 0 3 1 0 1 2 3 1 0 0 1 0 0 16 0 1644.8723 P42695 P42695 1372 1387 NCAPD3 Condensin-2 complex subunit D3 yes yes 2 8.4051E-05 74.76 By MS/MS By matching By matching 1 1 1 0.63973 0.6159 3.074 3 Median 0.63973 0.6159 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56124 0.61453 NaN 1 0 Median 0.72169 0.64883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5889600 3408900 2480700 3312900 2086400 1226500 0 0 0 2346100 1178900 1167200 230560 143570 86991 0 0 0 0 0 0 30731 2313 32303 160639;160640;160641 161652;161653 161652 2 SLGVTQLAVAVNK FETGGQTREHGLLVRSLGVTQLAVAVNKMD VRSLGVTQLAVAVNKMDQVNWQQERFQEIT R S L N K M 2 0 1 0 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1298.7558 B7Z524;H0YDX7;J3QT46;Q9Y450;E9PHZ9;H0YES5 B7Z524 231 243 HBS1L HBS1-like protein yes no 2 0.00078326 65.347 By matching By MS/MS By matching By matching 1 1 2 1 0.88202 0.88232 24.011 5 Median 0.88202 0.88232 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8607 0.87325 NaN 1 0 Median 1.1676 1.0185 3.0512 2 0 Median NaN NaN NaN 0 0 Median 0.66233 0.56818 NaN 1 0 Median 13778000 7605500 6172300 8418600 4714900 3703700 0 0 0 3898100 2199200 1698900 1269600 559000 710550 0 0 0 191510 132380 59131 30732 632 32304 160642;160643;160644;160645;160646 161654;161655 161654 2 SLGYAYVNFQQPADAER PILSIRVCRDMITRRSLGYAYVNFQQPADA GYAYVNFQQPADAERALDTMNFDVIKGKPV R S L E R A 3 1 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 17 0 1927.9064 B1ANR0;Q13310;B1ANR1;P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YBN4;E5RGH3;E5RJB9;E5RH24;E5RHG7 P11940 51 67 PABPC4;PABPC1 Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 1 no no 2 2.8895E-52 227.57 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 3 2 1.0592 0.91566 21.069 13 Median 0.96488 0.89593 2.7948 3 1 Plateau 1.0662 0.92989 9.9126 2 0 Median 1.4569 1.4779 NaN 1 0 Median 0.92619 0.7987 14.42 2 1 Median 1.2041 1.2134 5.6798 3 0 Median 1.017 0.86158 11.384 2 0 Median 163970000 76816000 87149000 118720000 57698000 61023000 5154900 2681400 2473400 16530000 6188000 10342000 2164400 956520 1207900 19278000 8287500 10991000 2117400 1004800 1112600 30733 1973;576 32305 160647;160648;160649;160650;160651;160652;160653;160654;160655;160656;160657;160658;160659 161656;161657;161658;161659;161660;161661;161662;161663;161664;161665;161666 161657 11 SLHDAIMIVR ILRGGAEQFMEETERSLHDAIMIVRRAIKN EETERSLHDAIMIVRRAIKNDSVVAGGGAI R S L V R R 1 1 0 1 0 0 0 0 1 2 1 0 1 0 0 1 0 0 0 1 0 0 10 0 1153.6278 Q99832 Q99832 388 397 CCT7 T-complex protein 1 subunit eta yes yes 2 2.4396E-05 145.16 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.3668 1.2217 29.158 7 Median 1.327 1.2467 2.8664 2 1 Median 1.1888 1.0131 23.374 2 1 Median 1.4155 1.4196 NaN 1 0 Median 1.2016 1.0387 NaN 1 0 Median 2.1763 2.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median 227560000 102490000 125070000 177080000 80952000 96126000 36072000 15512000 20560000 10730000 4583500 6146100 991550 506690 484860 2691200 939340 1751900 0 0 0 30734 3771 32306;32307 160660;160661;160662;160663;160664;160665;160666 161667;161668;161669;161670;161671;161672;161673 161667 1824 7 SLHDALCVIR FIRGGNKMIIEEAKRSLHDALCVIRNLIRD EEAKRSLHDALCVIRNLIRDNRVVYGGGAA R S L I R N 1 1 0 1 1 0 0 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1182.6179 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 401 410 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0014615 83.265 By MS/MS 2 1.2355 1.0622 23.32 2 Median NaN NaN NaN 0 0 Median 1.2355 1.0622 23.32 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10592000 5241200 5350800 0 0 0 10592000 5241200 5350800 0 0 0 0 0 0 0 0 0 0 0 0 30735 2364 32308 160667;160668 161674;161675 161675 2 SLHDALCVLAQTVK VLRGATQQILDEAERSLHDALCVLAQTVKD RSLHDALCVLAQTVKDSRTVYGGGCSEMLM R S L V K D 2 0 0 1 1 1 0 0 1 0 3 1 0 0 0 1 1 0 0 2 0 0 14 0 1553.8236 P78371;F5GWF6;F8VQ14 P78371 389 402 CCT2 T-complex protein 1 subunit beta yes no 2 8.1291E-43 220.25 By MS/MS By matching 2 1 0.80949 0.692 20.943 3 Median NaN NaN NaN 0 0 Median 0.89908 0.7731 28.201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80949 0.692 NaN 1 0 Median 40853000 19477000 21377000 0 0 0 40575000 19375000 21200000 0 0 0 0 0 0 0 0 0 278040 101900 176140 30736 2644 32309 160669;160670;160671 161676;161677 161676 2 SLHDALCVVK ILRGANDFMCDEMERSLHDALCVVKRVLES DEMERSLHDALCVVKRVLESKSVVPGGGAV R S L V K R 1 0 0 1 1 0 0 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 10 0 1140.5961 P17987;E7ERF2;E7EQR6;F5H282;F5GZ03 P17987 391 400 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00060363 114.28 By MS/MS 1 1.5147 1.2789 NaN 1 Median NaN NaN NaN 0 0 Median 1.5147 1.2789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6432400 1763600 4668800 0 0 0 6432400 1763600 4668800 0 0 0 0 0 0 0 0 0 0 0 0 30737 2051 32310 160672 161678 161678 1 SLHDPDGLVATYISEVHEHDGHLYLGSFR YSLVLELSDSGAFRRSLHDPDGLVATYISE EVHEHDGHLYLGSFRSPFLCRLSLQAV___ R S L F R S 1 1 0 3 0 0 2 3 4 1 4 0 0 1 1 3 1 0 2 2 0 0 29 0 3263.5636 Q9HDC9;H0Y512 Q9HDC9 376 404 APMAP Adipocyte plasma membrane-associated protein yes no 4 0.0010291 26.187 By MS/MS 1 1.2845 1.1019 NaN 1 Median NaN NaN NaN 0 0 Median 1.2845 1.1019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1195900 531970 663960 0 0 0 1195900 531970 663960 0 0 0 0 0 0 0 0 0 0 0 0 30738 4039 32311 160673 161679;161680 161679 2 SLHEAELLQSDER QKLIARHKQEVRRLKSLHEAELLQSDERAS LKSLHEAELLQSDERASQRCLRQAEELREQ K S L E R A 1 1 0 1 0 1 3 0 1 0 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1525.7372 Q9UPN4;I3L2X7;I3L2J8 Q9UPN4 731 743 CEP131 Centrosomal protein of 131 kDa yes no 3 0.00020989 65.563 By MS/MS By matching By matching By matching 1 1 1 1 1.0244 0.99066 10.289 4 Median 0.90543 0.8955 NaN 1 0 Median 1.2985 1.1471 NaN 1 0 Median 0.91594 1.0076 NaN 1 0 Median 1.1458 0.97399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10741000 5768200 4972400 2015300 1042600 972740 842680 343880 498800 4223700 2727500 1496200 3658900 1654200 2004700 0 0 0 0 0 0 30739 4355 32312 160674;160675;160676;160677 161681 161681 1 SLHHPNIVGYR SVYQKRLMDEAKILKSLHHPNIVGYRAFTE KILKSLHHPNIVGYRAFTEANDGSLCLAME K S L Y R A 0 1 1 0 0 0 0 1 2 1 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1291.6786 Q96KB5;E5RFX4 Q96KB5 91 101 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 3 4.0582E-05 93.096 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 0.97661 0.86747 42.737 8 Median 1.0644 1.0368 6.5241 2 0 Median 1.0791 0.90111 28.439 3 0 Median 0.71628 0.68739 NaN 1 0 Median 0.9444 0.83508 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38301 0.32888 NaN 1 0 Median 21195000 10389000 10806000 8987100 4268100 4719000 9042300 4236300 4806000 1437300 782960 654350 798880 384380 414500 0 0 0 929710 717660 212050 30740 3692 32313 160678;160679;160680;160681;160682;160683;160684;160685 161682;161683;161684;161685;161686;161687;161688;161689;161690;161691;161692;161693;161694;161695 161689 14 SLHLQKPLESTWTK QKLETFKPPKDIDLKSLHLQKPLESTWTKT KSLHLQKPLESTWTKTNSQFLSGPQKSSSP K S L T K T 0 0 0 0 0 1 1 0 1 0 3 2 0 0 1 2 2 1 0 0 0 0 14 1 1666.9043 Q68CQ4 Q68CQ4 246 259 DIEXF Digestive organ expansion factor homolog yes yes 3 0.00025961 59.607 By matching By MS/MS 1 1 0.95536 1.0093 23.207 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.041 1.1893 NaN 1 0 Median 0.87679 0.85654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9379200 4694800 4684500 0 0 0 0 0 0 6978200 3574800 3403400 2401000 1120000 1281100 0 0 0 0 0 0 30741 3123 32314 160686;160687 161696;161697 161697 2 SLHLSPQEQSASYQDR GGNCDLSHQERLQSKSLHLSPQEQSASYQD LHLSPQEQSASYQDRRQSWRRASMKETNRR K S L D R R 1 1 0 1 0 3 1 0 1 0 2 0 0 0 1 4 0 0 1 0 0 0 16 0 1844.8653 Q9H410;Q5JW53 Q9H410 77 92 DSN1 Kinetochore-associated protein DSN1 homolog yes no 3 1.8195E-10 104.41 By MS/MS 1 0.77212 0.83738 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77212 0.83738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6180300 3378400 2801800 0 0 0 0 0 0 6180300 3378400 2801800 0 0 0 0 0 0 0 0 0 30742 3960 32315 160688 161698;161699 161699 2 SLHPIHQGITELSR QSWRRASMKETNRRKSLHPIHQGITELSRS KSLHPIHQGITELSRSISVDLAESKRLGCL K S L S R S 0 1 0 0 0 1 1 1 2 2 2 0 0 0 1 2 1 0 0 0 0 0 14 0 1586.8529 Q9H410;Q5JW53;Q5JW54;Q5JW57 Q9H410 109 122 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2;3;4 1.3636E-08 103.85 By MS/MS By MS/MS 2 2 1.4582 1.4814 58.857 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79781 0.87092 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0198 2.0443 45.547 2 0 Median NaN NaN NaN 0 0 Median 44589000 17754000 26835000 0 0 0 0 0 0 16302000 8252700 8049700 0 0 0 28287000 9501800 18785000 0 0 0 30743 3960 32316 160689;160690;160691;160692 161700;161701;161702;161703;161704;161705 161704 6 SLHQAIEGDTSGDFLK DLLNIRREFIEKYDKSLHQAIEGDTSGDFL LHQAIEGDTSGDFLKALLALCGGED_____ K S L L K A 1 0 0 2 0 1 1 2 1 1 2 1 0 1 0 2 1 0 0 0 0 0 16 0 1716.8319 E5RK69;E5RFF0;H0YC77;P08133;E7EMC6 P08133 648 663 ANXA6 Annexin;Annexin A6 no no 2;3 1.4318E-19 181.76 By MS/MS By MS/MS By MS/MS 5 2 2 1.1233 1.0383 16.179 9 Median 1.0538 0.94265 9.0211 5 2 Median 1.3998 1.1745 9.7733 2 0 Median 0.98729 1.0172 32.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 317370000 148260000 169110000 262090000 124000000 138100000 36988000 15682000 21306000 18286000 8580000 9706200 0 0 0 0 0 0 0 0 0 30744 1898;854 32317 160693;160694;160695;160696;160697;160698;160699;160700;160701 161706;161707;161708;161709;161710;161711;161712;161713;161714;161715;161716;161717;161718 161709 13 SLHSAGPPLLAVTAAPPAQPLAK LNIPHPSVISSPLLKSLHSAGPPLLAVTAA LLAVTAAPPAQPLAKKKGVKRKADTTTPTP K S L A K K 6 0 0 0 0 1 0 1 1 0 4 1 0 0 5 2 1 0 0 1 0 0 23 0 2206.2474 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0Y799;A0A140T9X8 H0Y6K2 259 281 BRD2 Bromodomain-containing protein 2 yes no 3 2.1557E-16 71.299 By MS/MS By MS/MS By matching 1 4 1 0.48297 0.4795 9.9952 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42466 0.46155 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48297 0.4795 11.119 4 2 Median 0.65055 0.5418 NaN 1 0 Median 48589000 32315000 16274000 0 0 0 0 0 0 15770000 10512000 5258100 0 0 0 31960000 21273000 10686000 859120 529890 329220 30745 279 32318 160702;160703;160704;160705;160706;160707 161719;161720;161721;161722;161723;161724;161725 161723 6 SLHSATTIGNK TWNKPSLSGVAPLPRSLHSATTIGNKMYVF PLPRSLHSATTIGNKMYVFGGWVPLVMDDV R S L N K M 1 0 1 0 0 0 0 1 1 1 1 1 0 0 0 2 2 0 0 0 0 0 11 0 1127.5935 A6NEM2;P51610 A6NEM2 256 266 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.0090761 39.305 By matching By MS/MS By matching By matching By matching By matching 1 1 2 1 1 2 1.1866 1.0515 17.795 8 Median 1.2483 1.2719 NaN 1 0 Median 1.207 1.0399 NaN 1 0 Median 1.1349 1.2261 38.805 2 0 Median 1.2435 1.0632 NaN 1 0 Median 1.1588 1.1806 NaN 1 0 Median 1.143 0.99706 2.2238 2 0 Median 3096800 1536600 1560200 54602 24347 30256 715250 331230 384020 1339700 703140 636520 328980 172180 156800 402740 186630 216110 255610 119110 136500 30746 509;2438 32319 160708;160709;160710;160711;160712;160713;160714;160715 161726 161726 1 SLHSIIR KPWNLARSLDTHVTKSLHSIIRHRESTPKV SLDTHVTKSLHSIIRHRESTPKVVSKYIES K S L I R H 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 0 7 0 824.48684 Q14166 Q14166 434 440 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.003648 103.29 By MS/MS By MS/MS 2 2 1.3018 1.2004 14.654 4 Median 1.3601 1.3564 15.155 2 0 Median 1.293 1.1221 7.411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17294000 7573500 9720900 4321400 1696300 2625100 12973000 5877200 7095800 0 0 0 0 0 0 0 0 0 0 0 0 30747 2861 32320 160716;160717;160718;160719 161727;161728;161729;161730 161730 4 SLHTLFGDELCK AKTCVADESHAGCEKSLHTLFGDELCKVAS CEKSLHTLFGDELCKVASLRETYGDMADCC K S L C K V 0 0 0 1 1 0 1 1 1 0 3 1 0 1 0 1 1 0 0 0 0 0 12 0 1418.6864 CON__P02769 CON__P02769 89 100 yes yes 2;3 0.00032301 91.584 By MS/MS By MS/MS 2 1 0.096494 0.081141 92.761 3 Median 0.13411 0.12741 125.9 2 2 Median 0.096494 0.081141 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22557000 20325000 2232700 14718000 12624000 2094300 7838900 7700500 138430 0 0 0 0 0 0 0 0 0 0 0 0 + 30748 746 32321 160720;160721;160722 161731;161732;161733 161731 3 SLHVLDTFDGHFDGVPVVSK HLEVDVRIIEPQGLRSLHVLDTFDGHFDGV DTFDGHFDGVPVVSKGPQKAHIAFKPTVAQ R S L S K G 0 0 0 3 0 0 0 2 2 0 2 1 0 2 1 2 1 0 0 4 0 0 20 0 2168.0902 CON__Q9TRI1 CON__Q9TRI1 223 242 yes yes 3 0.012342 26.593 By MS/MS 1 0.13245 0.13179 NaN 1 Median 0.13245 0.13179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193300 1929500 263800 2193300 1929500 263800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 30749 793 32322 160723 161734 161734 1 SLIATVEK EADRLITYLDQTTQKSLIATVEKQLLGEHL LDQTTQKSLIATVEKQLLGEHLTAILQKGL K S L E K Q 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 859.50148 Q13620;K4DI93 Q13620 439 446 CUL4B Cullin-4B yes no 2 0.0055542 75.109 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.4237 1.3824 30.287 5 Median 1.0322 0.96344 NaN 1 0 Median 1.6275 1.4235 NaN 1 0 Median 1.4503 1.5017 11.709 2 1 Median 0.89101 0.78952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29427000 11714000 17714000 5674700 2714000 2960700 4430200 1566700 2863500 18158000 6874100 11284000 1164100 558960 605160 0 0 0 0 0 0 30750 1358 32323 160724;160725;160726;160727;160728 161735;161736;161737;161738;161739;161740 161735 6 SLIEEGGDWDRR YMDNDLITRNTEKAKSLIEEGGDWDRRNRL KAKSLIEEGGDWDRRNRLKVYQGLYCVAIR K S L R R N 0 2 0 2 0 0 2 2 0 1 1 0 0 0 0 1 0 1 0 0 0 0 12 1 1431.6743 Q15008;C9J0E9;H7C531 Q15008 166 177 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes no 3 8.5898E-05 80.979 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3101 1.3006 8.1203 4 Median 1.2237 1.2876 NaN 1 0 Median 1.2439 1.1616 NaN 1 0 Median 1.3799 1.4143 NaN 1 0 Median 1.4925 1.3138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35988000 16174000 19814000 6921900 3063400 3858500 17353000 7395800 9957400 10743000 5310100 5433000 969360 404390 564970 0 0 0 0 0 0 30751 2911 32324 160729;160730;160731;160732 161741;161742;161743;161744;161745 161743 5 SLIGVEYKPVSATGAEDK DIAVQELLQLKAQYKSLIGVEYKPVSATGA GVEYKPVSATGAEDKDKKKKEKENKSEKQN K S L D K D 2 0 0 1 0 0 2 2 0 1 1 2 0 0 1 2 1 0 1 2 0 0 18 1 1862.9626 P07814;V9GYZ6 P07814 944 961 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2;3 3.1475E-31 194.3 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.93427 0.87959 39.838 5 Median 0.91025 0.86339 2.6279 2 0 Median 1.0264 0.98721 5.9994 2 0 Median NaN NaN NaN 0 0 Median 0.39863 0.38483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68625000 35077000 33549000 47059000 24189000 22869000 16385000 7881400 8503700 3156600 1572400 1584200 2024900 1433500 591390 0 0 0 0 0 0 30752 1892 32325 160733;160734;160735;160736;160737;160738 161746;161747;161748;161749;161750;161751;161752 161747 7 SLIGVEYKPVSATGAEDKDK DIAVQELLQLKAQYKSLIGVEYKPVSATGA EYKPVSATGAEDKDKKKKEKENKSEKQNKP K S L D K K 2 0 0 2 0 0 2 2 0 1 1 3 0 0 1 2 1 0 1 2 0 0 20 2 2106.0845 P07814 P07814 944 963 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3;4 1.1225E-09 85.231 By MS/MS By MS/MS By matching 3 2 1 0.87156 0.95625 21.61 6 Median 0.88228 0.95625 3.5966 3 0 Plateau 1.0133 1.1653 23.042 2 0 Median 0.60306 0.69745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54763000 27532000 27231000 44501000 22487000 22013000 7155300 3351300 3804000 3107100 1692900 1414200 0 0 0 0 0 0 0 0 0 30753 1892 32326 160739;160740;160741;160742;160743;160744 161753;161754;161755;161756;161757 161753 5 SLIINTFYSNK ______________________________ ______________________________ M S L N K E 0 0 2 0 0 0 0 0 0 2 1 1 0 1 0 2 1 0 1 0 0 0 11 0 1298.6871 Q58FF6 Q58FF6 2 12 HSP90AB4P Putative heat shock protein HSP 90-beta 4 yes yes 2 0.00011409 129.38 By MS/MS By MS/MS By matching 2 2 1 1.019 0.93947 21.233 5 Median 1.0081 0.92853 1.6558 2 2 Median 0.85161 0.79385 34.585 2 0 Median NaN NaN NaN 0 0 Median 1.221 1.0611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34522000 17119000 17403000 14058000 7636500 6421300 19841000 9196700 10644000 0 0 0 623210 285420 337790 0 0 0 0 0 0 30754 3039 32327 160745;160746;160747;160748;160749 161758;161759;161760;161761 161761 4 SLIINTNPVEVYK RQLLAPVVKEIIDDKSLIINTNPVEVYKAW DKSLIINTNPVEVYKAWVNQLETQTGEASK K S L Y K A 0 0 2 0 0 0 1 0 0 2 1 1 0 0 1 1 1 0 1 2 0 0 13 0 1488.8188 E7EWC2;F5H7S7;Q13576 E7EWC2 947 959 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 0.00018752 81.865 By MS/MS By matching 1 1 0.88182 0.83202 13.642 2 Median 0.78361 0.75551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99234 0.91628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7473600 4085000 3388600 7111300 3904500 3206900 0 0 0 0 0 0 362320 180580 181740 0 0 0 0 0 0 30755 901 32328 160750;160751 161762;161763 161763 2 SLILTALQR TRWRRLAAEQRESLKSLILTALQRETEHCV QRESLKSLILTALQRETEHCVSLSLAQLSA K S L Q R E 1 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 9 0 1013.6233 Q8TEX9;H0YN14;H0YLV0;H0YL92 Q8TEX9 82 90 IPO4 Importin-4 yes no 2 0.00081745 96.253 By MS/MS By matching 1 2 1.3471 1.2134 9.4154 3 Median 1.3471 1.3026 NaN 1 0 Median 1.345 1.1453 8.1714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7614900 3731500 3883500 4279300 2133100 2146300 3335600 1598400 1737200 0 0 0 0 0 0 0 0 0 0 0 0 30756 3480 32329 160752;160753;160754 161764;161765 161765 2 SLIPAEGTLSK SFFKEYGQIESVRFRSLIPAEGTLSKKLAA VRFRSLIPAEGTLSKKLAAIKRKIHPDQKN R S L S K K 1 0 0 0 0 0 1 1 0 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1114.6234 P42696 P42696 218 228 RBM34 RNA-binding protein 34 yes yes 2 0.0031616 50.353 By matching By MS/MS By matching 1 1 1 0.98182 0.83412 14.516 3 Median NaN NaN NaN 0 0 Median 1.2173 1.0636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87514 0.83412 NaN 1 0 Median 0.98182 0.82093 NaN 1 0 Median 9906000 5420500 4485500 0 0 0 1109300 525060 584280 0 0 0 0 0 0 7474100 4280600 3193600 1322600 614900 707680 30757 2314 32330 160755;160756;160757 161766 161766 1 SLIPPIPVSPPILAPR ALVARLPLLLPRAPRSLIPPIPVSPPILAP LIPPIPVSPPILAPRLSSGALKVATLPLSS R S L P R L 1 1 0 0 0 0 0 0 0 3 2 0 0 0 6 2 0 0 0 1 0 0 16 0 1666.0182 P48382;F8W689 P48382 339 354 RFX5 DNA-binding protein RFX5 yes no 2 0.043919 22.879 By MS/MS 1 0.40424 0.41684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40424 0.41684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 497660 382420 115240 0 0 0 0 0 0 497660 382420 115240 0 0 0 0 0 0 0 0 0 30758 2360 32331 160758 161767 161767 1 SLIPSYIR VRLQLWDTAGQERFRSLIPSYIRDSTVAVV AGQERFRSLIPSYIRDSTVAVVVYDITNVN R S L I R D 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 0 0 1 0 0 0 8 0 947.54402 P20340;Q9NRW1;J3KR73;C9JU14 P20340 77 84 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 2 0.0022898 110.63 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.2554 1.073 40.145 4 Median 0.90538 0.86065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4817 1.2761 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.64 1.3608 58.111 2 0 Median 37889000 19659000 18230000 35055000 18754000 16301000 268600 140770 127830 0 0 0 510080 233490 276590 0 0 0 2055400 530120 1525300 30759 2079;4089 32332 160759;160760;160761;160762;160763;160764 161768;161769 161768 2 SLIQFMK PLEKELPNFWEQNRRSLIQFMKQVHQGVRG NFWEQNRRSLIQFMKQVHQGVRGFVLDATD R S L M K Q 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 0 7 0 865.47316 O75976 O75976 784 790 CPD Carboxypeptidase D yes yes 2 0.01526 72.021 By MS/MS By matching 1 1 1.1302 1.0414 7.9713 2 Median 1.1478 1.1018 NaN 1 0 Median 1.113 0.98431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7517600 3635900 3881700 5368100 2546400 2821800 2149400 1089500 1059900 0 0 0 0 0 0 0 0 0 0 0 0 30760 1714 32333 160765;160766 161770;161771 161771 2 SLISMDEINK EYVEAVSFQHFIKTRSLISMDEINKQLIFT FIKTRSLISMDEINKQLIFTTEDNGKENKT R S L N K Q 0 0 1 1 0 0 1 0 0 2 1 1 1 0 0 2 0 0 0 0 0 0 10 0 1148.5747 Q99598;C4P0D6;C4P0D8;Q5VVQ1 Q99598 141 150 TSNAX;DISC1 Translin-associated protein X yes no 2 0.0014621 65.305 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.82976 0.82023 13.171 4 Median 0.97733 0.88682 NaN 1 0 Median 1.1337 0.95337 NaN 1 0 Median 0.65876 0.75865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70448 0.71909 NaN 1 0 Median NaN NaN NaN 0 0 Median 43920000 21510000 22409000 30738000 14822000 15916000 8335100 3780000 4555100 2476400 1297900 1178500 0 0 0 2370100 1610800 759370 0 0 0 30761 3756 32334 160767;160768;160769;160770 161772;161773;161774 161773 3 SLISVIHLITAAR FRMGLWVTAPIALLKSLISVIHLITAARNM LKSLISVIHLITAARNMAALDAADRAKKK_ K S L A R N 2 1 0 0 0 0 0 0 1 3 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1392.8453 O14735;B3KY94 O14735 187 199 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase yes no 2 0.00014477 83.397 By MS/MS By MS/MS 2 3 1.2478 1.1483 18.161 4 Median 0.95812 0.96293 21.601 2 0 Median 1.4246 1.2067 3.7189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11816000 5216800 6599600 4433000 2033500 2399500 7383500 3183300 4200200 0 0 0 0 0 0 0 0 0 0 0 0 30762 588 32335 160771;160772;160773;160774;160775 161775;161776;161777;161778;161779;161780 161780 6 SLISWNYLR QKVMALWHQLHVNTKSLISWNYLRKDLDLV LHVNTKSLISWNYLRKDLDLVQTWNLEKLR K S L L R K 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 0 1 1 0 0 0 9 0 1150.6135 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 951 959 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0021293 74.127 By MS/MS 1 1.0553 1.0546 NaN 1 Median 1.0553 1.0546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5657300 2965400 2691800 5657300 2965400 2691800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30763 1220 32336 160776 161781;161782 161781 2 SLIVEGK EDEDDEEEEEEEKEKSLIVEGKREKKKVER EEEEEKEKSLIVEGKREKKKVERLTMQVSS K S L G K R 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 7 0 744.43815 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;A0A494C198;D6R9L5 H0Y993 51 57 DEK Protein DEK yes no 1 0.0055695 68.915 By matching By MS/MS By MS/MS By matching 2 2 2 1 1.3349 1.1475 10.515 7 Median NaN NaN NaN 0 0 Median 1.4308 1.2354 7.277 2 0 Median 0.98343 0.97893 1.802 2 0 Median 1.281 1.1216 3.2315 2 0 Median NaN NaN NaN 0 0 Median 1.4441 1.1951 NaN 1 0 Median 19070000 8573500 10496000 0 0 0 2952500 1311200 1641300 9685000 4757800 4927300 3312100 1358800 1953300 0 0 0 3120100 1145800 1974400 30764 1166 32337 160777;160778;160779;160780;160781;160782;160783 161783;161784 161784 2 SLIVEGKR EDEDDEEEEEEEKEKSLIVEGKREKKKVER EEEEKEKSLIVEGKREKKKVERLTMQVSSL K S L K R E 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 1 900.53927 H0Y993;P35659;B4DFG0;A0A494C028;H0Y8X0;A0A494C198;D6R9L5 H0Y993 51 58 DEK Protein DEK yes no 2 0.010581 67.032 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.085 1.045 13.554 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93868 0.95048 NaN 1 0 Median 1.3024 1.2291 NaN 1 0 Median 0.90361 0.93846 NaN 1 0 Median 1.2541 1.149 NaN 1 0 Median 4708400 2065500 2642900 0 0 0 0 0 0 1350200 679140 671110 288150 109640 178510 2133800 958960 1174800 936290 317800 618490 30765 1166 32338 160784;160785;160786;160787 161785;161786;161787;161788;161789 161787 5 SLKAYGELPEHAK NKADVILKYNADEARSLKAYGELPEHAKIN ARSLKAYGELPEHAKINETDTFGPGDDDEI R S L A K I 2 0 0 0 0 0 2 1 1 0 2 2 0 0 1 1 0 0 1 0 0 0 13 1 1441.7565 P47813;X6RAC9;O14602;A6NJH9 P47813 102 114 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 3 0.041238 18.457 By matching By matching By MS/MS 1 1 1 0.93156 0.84764 8.3302 3 Plateau NaN NaN NaN 0 0 Median 0.86371 0.76344 NaN 1 0 Median 0.8759 0.90004 NaN 1 0 Median 0.94227 0.84764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2682800 1417900 1265000 0 0 0 707340 398510 308830 888740 472060 416690 1086800 547310 539450 0 0 0 0 0 0 30766 2355 32339 160788;160789;160790 161790;161791 161791 2 SLKDEDVLQK WYPARQSLRLDPKGKSLKDEDVLQKLPVGT DPKGKSLKDEDVLQKLPVGTTATLYFRDLG K S L Q K L 0 0 0 2 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 10 1 1173.6241 Q9NZ01;M0R2N5 Q9NZ01 58 67 TECR Very-long-chain enoyl-CoA reductase yes no 2 2.9855E-17 158.57 By MS/MS By MS/MS 3 3 1.1104 1.0703 21.426 6 Median 0.89974 0.97106 32.622 3 1 Median 1.1412 1.0931 9.1368 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57940000 27990000 29950000 16551000 8192200 8358900 41389000 19798000 21591000 0 0 0 0 0 0 0 0 0 0 0 0 30767 4181 32340 160791;160792;160793;160794;160795;160796 161792;161793;161794;161795;161796 161794 5 SLKDMEESIR DAAQEARNKFEEAERSLKDMEESIRNLEQE EEAERSLKDMEESIRNLEQEISFDFGPNGE R S L I R N 0 1 0 1 0 0 2 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 10 1 1206.5914 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 390 399 PRKCSH Glucosidase 2 subunit beta yes no 2;3 3.4598E-05 132.25 By MS/MS By MS/MS By matching 4 3 1 1.1667 1.1363 21.976 8 Median 0.96133 0.96066 25.62 4 0 Median 1.3201 1.2121 19.232 3 0 Median 1.2782 1.3591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 224640000 112160000 112480000 198670000 99780000 98892000 24307000 11619000 12687000 1664700 764560 900120 0 0 0 0 0 0 0 0 0 30768 1378 32341;32342 160797;160798;160799;160800;160801;160802;160803;160804 161797;161798;161799;161800;161801;161802;161803;161804 161801 451 8 SLKDPNNSLTLWVIDQGLK RDNALTLLIKAVPRKSLKDPNNSLTLWVID PNNSLTLWVIDQGLKKILEVGGSLQDPPGE K S L L K K 0 0 2 2 0 1 0 1 0 1 4 2 0 0 1 2 1 1 0 1 0 0 19 1 2140.1528 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 467 485 UNC45A Protein unc-45 homolog A yes no 3 0.00074909 30.416 By MS/MS 1 0.50125 0.48531 NaN 1 Median NaN NaN NaN 0 0 Median 0.50125 0.48531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7080100 3713500 3366600 0 0 0 7080100 3713500 3366600 0 0 0 0 0 0 0 0 0 0 0 0 30769 335 32343 160805 161805 161805 1 SLKDQLTDLSNSLEK HSSQNELAKLESELKSLKDQLTDLSNSLEK SLKDQLTDLSNSLEKCKEQKGNLEGIIRQQ K S L E K C 0 0 1 2 0 1 1 0 0 0 4 2 0 0 0 3 1 0 0 0 0 0 15 1 1689.8785 Q14789 Q14789 2316 2330 GOLGB1 Golgin subfamily B member 1 yes yes 3 0.00010543 52.823 By MS/MS By matching 1 1 1.0044 1.0223 18.935 2 Median 0.82181 0.89422 NaN 1 0 Median 1.2276 1.1688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9494500 4751100 4743400 5442400 2883600 2558800 4052200 1867600 2184600 0 0 0 0 0 0 0 0 0 0 0 0 30770 2900 32344 160806;160807 161806;161807 161807 2 SLKEEEQERR KEEKQQEANLKNRQKSLKEEEQERRDIGLK KNRQKSLKEEEQERRDIGLKNALGCENKGF K S L R R D 0 2 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 10 2 1302.6528 Q8N954 Q8N954 76 85 GPATCH11 G patch domain-containing protein 11 yes yes 3 0.047123 19.607 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.96155 1.0851 12.575 5 Median 1.1179 1.1716 NaN 1 0 Median 0.96155 1.1281 NaN 1 0 Median 0.92397 1.0851 NaN 1 0 Median 0.98294 1.0055 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79898 0.85249 NaN 1 0 Median 1329500 659410 670090 141920 66395 75526 177750 83662 94091 216460 108840 107610 717570 362840 354730 0 0 0 75811 37672 38140 30771 3396 32345 160808;160809;160810;160811;160812 161808 161808 1 SLKEESVEAVK EIARPLENENQEFLKSLKEESVEAVKSLET EFLKSLKEESVEAVKSLETEILESLKSAGQ K S L V K S 1 0 0 0 0 0 3 0 0 0 1 2 0 0 0 2 0 0 0 2 0 0 11 1 1217.6503 P48681 P48681 809 819 NES Nestin yes yes 2;3 0.009618 54.982 By matching By MS/MS By MS/MS 1 3 2 1.1943 1.1061 44.923 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2176 1.1326 NaN 1 0 Median 1.1642 1.2407 68.187 3 0 Median 1.1943 1.0754 0.62368 2 0 Median 8294600 3814000 4480600 0 0 0 0 0 0 0 0 0 337070 152120 184950 6302300 2960400 3341900 1655300 701520 953780 30772 2366 32346 160813;160814;160815;160816;160817;160818 161809;161810 161809 2 SLKEILWK APSQPNSQIRQNIRRSLKEILWKRVNDSDD IRQNIRRSLKEILWKRVNDSDDLIMTENEV R S L W K R 0 0 0 0 0 0 1 0 0 1 2 2 0 0 0 1 0 1 0 0 0 0 8 1 1015.6066 Q9BTC0 Q9BTC0 677 684 DIDO1 Death-inducer obliterator 1 yes yes 2 0.02398 77.923 By MS/MS 1 0.86798 1.0013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86798 1.0013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4370600 2299600 2071000 0 0 0 0 0 0 4370600 2299600 2071000 0 0 0 0 0 0 0 0 0 30773 3824 32347 160819 161811;161812 161812 2 SLKPGALSNSESIPTIDGLR CHTTVRPAKPPVVDRSLKPGALSNSESIPT ALSNSESIPTIDGLRHVVVPGRLCPQFLQL R S L L R H 1 1 1 1 0 0 1 2 0 2 3 1 0 0 2 4 1 0 0 0 0 0 20 1 2054.1008 O95630;C9JK83 O95630 236 255 STAMBP STAM-binding protein yes no 3 4.6138E-05 55.763 By MS/MS 1 0.71338 0.7237 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71338 0.7237 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12617000 8017000 4600000 0 0 0 0 0 0 12617000 8017000 4600000 0 0 0 0 0 0 0 0 0 30774 1784 32348 160820 161813 161813 1 SLKQNINLSAPIMSR LAAANPISGHYDRSKSLKQNINLSAPIMSR SLKQNINLSAPIMSRFDLFFILVDECNEVT K S L S R F 1 1 2 0 0 1 0 0 0 2 2 1 1 0 1 3 0 0 0 0 0 0 15 1 1670.9138 Q14566 Q14566 515 529 MCM6 DNA replication licensing factor MCM6 yes yes 3 4.1912E-05 78.69 By MS/MS 1 0.71686 0.7461 NaN 1 Median 0.71686 0.7461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5439900 3152000 2287900 5439900 3152000 2287900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30775 2881 32349 160821 161814 161814 1 SLKQPLEQNQTISPLSTYEESK IHPPKLVLKKINSKRSLKQPLEQNQTISPL QNQTISPLSTYEESKVSKYAFELVDKQALL R S L S K V 0 0 1 0 0 3 3 0 0 1 3 2 0 0 2 4 2 0 1 0 0 0 22 1 2519.2755 Q9UQR1 Q9UQR1 400 421 ZNF148 Zinc finger protein 148 yes yes 3 3.3497E-09 52.061 By MS/MS 1 0.69631 0.79541 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69631 0.79541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7518000 4732400 2785700 0 0 0 0 0 0 7518000 4732400 2785700 0 0 0 0 0 0 0 0 0 30776 4364 32350 160822 161815 161815 1 SLLASLHTSR LLSLPAPASVQQQSKSLLASLHTSRSAYHS QQQSKSLLASLHTSRSAYHSHKDQALLSKA K S L S R S 1 1 0 0 0 0 0 0 1 0 3 0 0 0 0 3 1 0 0 0 0 0 10 0 1083.6037 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2527 2536 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00033729 124.74 By MS/MS 1 1.2676 1.0212 NaN 1 Median NaN NaN NaN 0 0 Median 1.2676 1.0212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13543000 5584600 7958100 0 0 0 13543000 5584600 7958100 0 0 0 0 0 0 0 0 0 0 0 0 30777 3089 32351 160823 161816;161817 161816 2 SLLAWQSLR QALVTLWHQLHVDMKSLLAWQSLRRDVQLI LHVDMKSLLAWQSLRRDVQLIRSWSLATFR K S L L R R 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 2 0 1 0 0 0 0 9 0 1072.6029 Q15149;H0YDN1 Q15149 1029 1037 PLEC Plectin yes no 2 0.00053478 116.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 3 2 1 1.3637 1.2856 47.434 11 Median 1.1845 1.1679 16.424 2 0 Median 6.2567 5.0035 NaN 1 1 Median 1.1568 1.1888 27.171 2 0 Median 1.4669 1.2325 10.176 3 0 Median 1.4411 1.5144 13.018 2 0 Median 0.92866 0.82121 NaN 1 0 Median 70359000 20244000 50116000 27364000 11287000 16077000 28097000 2704300 25392000 9821600 4243400 5578200 1298900 520830 778110 3664200 1422200 2242000 113930 66316 47612 30778 2933 32352 160824;160825;160826;160827;160828;160829;160830;160831;160832;160833;160834 161818;161819;161820;161821;161822;161823;161824;161825 161821 8 SLLAWQSLRRDVQLIR QALVTLWHQLHVDMKSLLAWQSLRRDVQLI LLAWQSLRRDVQLIRSWSLATFRTLKPEEQ K S L I R S 1 3 0 1 0 2 0 0 0 1 4 0 0 0 0 2 0 1 0 1 0 0 16 2 1953.1272 Q15149;H0YDN1 Q15149 1029 1044 PLEC Plectin yes no 2 0.0069665 48.998 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30779 2933 32353 160835 161826 161826 1 SLLDANFEPGKK INTADMAPLDHTSDKSLLDANFEPGKKNFL SDKSLLDANFEPGKKNFLHLTDKDGEQPQI K S L K K N 1 0 1 1 0 0 1 1 0 0 2 2 0 1 1 1 0 0 0 0 0 0 12 1 1317.6929 Q96K76 Q96K76 111 122 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 3 0.046961 14.258 By MS/MS 1 0.77577 0.77745 NaN 1 Median 0.77577 0.77745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3091700 1824100 1267600 3091700 1824100 1267600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30780 3690 32354 160836 161827 161827 1 SLLDASEEAIKK VEKMTGLVDEAIDTKSLLDASEEAIKKDLD DTKSLLDASEEAIKKDLDKCKVAMANIQPQ K S L K K D 2 0 0 1 0 0 2 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1302.7031 P18206 P18206 721 732 VCL Vinculin yes yes 2;3 1.3008E-05 98.048 By MS/MS By MS/MS By matching 2 4 1 1.0297 1.0102 11.156 7 Median 1.0639 1.109 4.339 2 0 Median 1.0164 0.95378 10.518 4 0 Median NaN NaN NaN 0 0 Median 1.0108 0.9629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81488000 39553000 41936000 56462000 27290000 29172000 24402000 11944000 12457000 0 0 0 624370 317820 306550 0 0 0 0 0 0 30781 2057 32355 160837;160838;160839;160840;160841;160842;160843 161828;161829;161830;161831;161832;161833;161834 161830 7 SLLDDWASK SMSAKELEKQIEHLKSLLDDWASKGTLVEE QIEHLKSLLDDWASKGTLVEEINCKGTSLE K S L S K G 1 0 0 2 0 0 0 0 0 0 2 1 0 0 0 2 0 1 0 0 0 0 9 0 1033.508 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4366 4374 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.04318 32.841 By matching By MS/MS By matching By matching 1 1 2 1 0.99678 1.0439 6.6903 5 Median 0.94262 0.93746 NaN 1 0 Median 1.2683 1.1158 NaN 1 0 Median 0.99302 1.0612 2.3302 2 0 Median 1.0836 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11261000 5616200 5644300 5229200 2829000 2400200 960300 485510 474790 4948300 2246500 2701800 122690 55159 67533 0 0 0 0 0 0 30782 1220 32356 160844;160845;160846;160847;160848 161835 161835 1 SLLDGEGPQAVGGQDVAFSR CNLRSKLRPAKSQDKSLLDGEGPQAVGGQD EGPQAVGGQDVAFSRSFLPGEGPGRAQDRT K S L S R S 2 1 0 2 0 2 1 4 0 0 2 0 0 1 1 2 0 0 0 2 0 0 20 0 2001.9756 A1X283 A1X283 679 698 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 2 0.00053723 49.31 By MS/MS By matching 3 1 0.78049 0.83399 18.15 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76651 0.81876 13.665 3 2 Median 1.1855 1.027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6448000 3581100 2867000 0 0 0 0 0 0 6056100 3418900 2637200 391930 162120 229810 0 0 0 0 0 0 30783 494 32357 160849;160850;160851;160852 161836;161837;161838 161838 3 SLLDGNIDSSQYEDSLR VDVEDYYPAFLDMVRSLLDGNIDSSQYEDS LDGNIDSSQYEDSLREMFTIHAYIAFTMDK R S L L R E 0 1 1 3 0 1 1 1 0 1 3 0 0 0 0 4 0 0 1 0 0 0 17 0 1910.8858 Q96ST3 Q96ST3 968 984 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 2.3001E-05 71.241 By MS/MS By matching 2 3 0.80239 0.80599 43.151 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56393 0.61171 51.825 2 0 Median 0.94354 0.80599 48.594 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10515000 5696300 4818700 0 0 0 0 0 0 9091000 4934700 4156200 1424100 761590 662510 0 0 0 0 0 0 30784 3737 32358 160853;160854;160855;160856;160857 161839 161839 1 SLLDIISDPDAGTPEDK FEYEEKIMSKTTLDKSLLDIISDPDAGTPE LDIISDPDAGTPEDKMRLFLIYYISTQQAP K S L D K M 1 0 0 4 0 0 1 1 0 2 2 1 0 0 2 2 1 0 0 0 0 0 17 0 1784.868 Q8WVM8 Q8WVM8 437 453 SCFD1 Sec1 family domain-containing protein 1 yes yes 2 0.00018213 48.004 By MS/MS 1 0.7201 0.63261 NaN 1 Median NaN NaN NaN 0 0 Median 0.7201 0.63261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 815490 457570 357930 0 0 0 815490 457570 357930 0 0 0 0 0 0 0 0 0 0 0 0 30785 3503 32359 160858 161840 161840 1 SLLEAVSFLHANNIVHR EKVALSEKETRSIMRSLLEAVSFLHANNIV LEAVSFLHANNIVHRDLKPENILLDDNMQI R S L H R D 2 1 2 0 0 0 1 0 2 1 3 0 0 1 0 2 0 0 0 2 0 0 17 0 1919.0377 H3BTI9;H3BP07;H3BTW6;J3KNN3;P15735 H3BTI9 28 44 PHKG2 Phosphorylase b kinase gamma catalytic chain, liver/testis isoform yes no 3 1.0443E-05 62.378 By MS/MS 1 1.1529 1.0043 NaN 1 Median NaN NaN NaN 0 0 Median 1.1529 1.0043 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6186200 2600500 3585700 0 0 0 6186200 2600500 3585700 0 0 0 0 0 0 0 0 0 0 0 0 30786 1217 32360 160859 161841 161841 1 SLLEGEGSSGGGGR LDIKIRLENEIQTYRSLLEGEGSSGGGGRG RSLLEGEGSSGGGGRGGGSFGGGYGGGSSG R S L G R G 0 1 0 0 0 0 2 6 0 0 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1261.5899 P13645;CON__P13645 P13645 451 464 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.3707E-26 162.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 11 11 12 7 7 0.028519 0.026398 106.1 32 Median 0.040143 0.037988 95.79 5 5 Median 0.019654 0.016251 95.947 10 10 Median 0.091872 0.088001 98.198 7 7 Median 0.026215 0.021569 114.68 6 6 Median 0.091533 0.093619 NaN 1 1 Median 0.015595 0.013377 133.3 3 3 Median 695460000 680370000 15091000 66281000 64619000 1662000 188410000 180210000 8208400 69153000 66513000 2640700 174240000 172340000 1908000 135390000 135100000 288730 61983000 61600000 383160 + 30787 756 32361 160860;160861;160862;160863;160864;160865;160866;160867;160868;160869;160870;160871;160872;160873;160874;160875;160876;160877;160878;160879;160880;160881;160882;160883;160884;160885;160886;160887;160888;160889;160890;160891;160892;160893;160894;160895;160896;160897;160898;160899;160900;160901;160902;160903;160904;160905;160906;160907;160908;160909;160910;160911;160912;160913;160914;160915 161842;161843;161844;161845;161846;161847;161848;161849;161850;161851;161852;161853;161854;161855;161856;161857;161858;161859;161860;161861;161862;161863;161864;161865;161866;161867;161868;161869;161870;161871;161872;161873;161874;161875;161876;161877;161878;161879;161880;161881;161882;161883;161884;161885;161886;161887;161888;161889;161890;161891;161892;161893;161894;161895;161896;161897;161898;161899;161900;161901;161902;161903;161904;161905;161906;161907;161908;161909;161910;161911;161912;161913;161914;161915 161907 74 SLLEGLLQR TMAVELPDSFSPELRSLLEGLLQRDVNRRL FSPELRSLLEGLLQRDVNRRLGCLGRGAQE R S L Q R D 0 1 0 0 0 1 1 1 0 0 4 0 0 0 0 1 0 0 0 0 0 0 9 0 1027.6026 P25098;P35626 P25098 423 431 ADRBK1;ADRBK2 Beta-adrenergic receptor kinase 1;Beta-adrenergic receptor kinase 2 yes no 2 0.015787 43.246 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.2537 1.1301 10.353 5 Median 1.1382 1.1301 NaN 1 0 Median 1.2828 1.1098 3.4566 2 0 Median 0.9804 1.0466 NaN 1 0 Median 1.6114 1.3674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8896500 4002500 4894000 1270800 709300 561470 4945600 2014400 2931200 2247900 1130200 1117700 432190 148490 283690 0 0 0 0 0 0 30788 2128 32362 160916;160917;160918;160919;160920 161916;161917 161917 2 SLLEGQEDHYNNLSASK MDIKSRLEQEIATYRSLLEGQEDHYNNLSA LEGQEDHYNNLSASKVL_____________ R S L S K V 1 0 2 1 0 1 2 1 1 0 3 1 0 0 0 3 0 0 1 0 0 0 17 0 1903.8912 CON__P08727;P08727 CON__P08727 382 398 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 6.7244E-25 192.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 6 3 6 10 1.3229 1.1311 23.448 30 Median 0.92078 0.84434 2.5552 2 0 Median 1.8268 1.5559 7.5862 3 0 Median 0.96619 0.95823 26.102 6 0 Median 1.3405 1.1536 13.537 3 0 Median 1.1055 1.0623 11.101 6 0 Median 1.4742 1.2242 7.5049 10 0 Median 1680400000 799300000 881070000 165580000 82560000 83016000 33839000 11734000 22105000 1126100000 549600000 576470000 94791000 39384000 55407000 204040000 92981000 111060000 56063000 23049000 33014000 + 30789 752 32363 160921;160922;160923;160924;160925;160926;160927;160928;160929;160930;160931;160932;160933;160934;160935;160936;160937;160938;160939;160940;160941;160942;160943;160944;160945;160946;160947;160948;160949;160950 161918;161919;161920;161921;161922;161923;161924;161925;161926;161927;161928;161929;161930;161931;161932;161933;161934;161935;161936;161937;161938;161939;161940;161941;161942;161943;161944;161945;161946;161947;161948;161949;161950;161951;161952;161953;161954;161955;161956;161957 161929 39 SLLEIQQEEAR LSGWGNVSKPSGTTKSLLEIQQEEARQMQK GTTKSLLEIQQEEARQMQKQQQQQQQHQQP K S L A R Q 1 1 0 0 0 2 3 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1314.6779 Q6Y7W6;I1E4Y6;C9JH18 Q6Y7W6 1001 1011 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 2 9.8588E-15 183.47 By MS/MS By MS/MS By matching 1 1 1 1.0826 0.89025 14.417 3 Median 0.93864 0.88098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0826 1.1366 NaN 1 1 Median 1.0939 0.89025 NaN 1 0 Median 19232000 9928300 9303400 14246000 7206000 7040200 0 0 0 0 0 0 0 0 0 3896200 2218800 1677400 1089300 503500 585760 30790 3192 32364 160951;160952;160953 161958;161959;161960 161958 3 SLLELAR ETANECGEAFFFYGKSLLELARMENGVLGN EAFFFYGKSLLELARMENGVLGNALEGVHV K S L A R M 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 7 0 800.4756 P49321;E9PPR5;E9PI86;E9PPQ8 P49321 94 100 NASP Nuclear autoantigenic sperm protein yes no 2 0.0037366 102.98 By MS/MS By MS/MS 2 4 0.99753 0.91624 26.15 6 Median 1.0926 1.0408 3.3228 2 0 Median 0.93989 0.81165 32.671 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95628000 44276000 51352000 51039000 23436000 27603000 44589000 20840000 23749000 0 0 0 0 0 0 0 0 0 0 0 0 30791 2376 32365 160954;160955;160956;160957;160958;160959 161961;161962;161963;161964;161965;161966;161967;161968 161962 8 SLLENDQLLSHGGQDLSADAFHR LKDCTYGTEIISKWKSLLENDQLLSHGGQD LSHGGQDLSADAFHRLIWEVWMPFVRNIVT K S L H R L 2 1 1 3 0 2 1 2 2 0 5 0 0 1 0 3 0 0 0 0 0 0 23 0 2522.215 Q9UBB9 Q9UBB9 457 479 TFIP11 Tuftelin-interacting protein 11 yes yes 3;4 0.015007 19.044 By MS/MS By matching 2 1 1.1043 1.1753 2.6104 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0727 1.1487 3.6661 2 1 Median NaN NaN NaN 0 0 Median 1.0942 1.1549 NaN 1 0 Median NaN NaN NaN 0 0 Median 11745000 5474400 6270100 0 0 0 0 0 0 7978200 3818200 4160100 0 0 0 3766300 1656200 2110100 0 0 0 30792 4235 32366 160960;160961;160962 161969;161970 161969 2 SLLENQSLSSSCESLK LLQEERDKLITEMDRSLLENQSLSSSCESL LLENQSLSSSCESLKLALEGLTEDKEKLVK R S L L K L 0 0 1 0 1 1 2 0 0 0 4 1 0 0 0 6 0 0 0 0 0 0 16 0 1780.8513 Q14789;E7EU81 Q14789 1558 1573 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0001386 60.49 By MS/MS 1 1.2097 1.0552 NaN 1 Median NaN NaN NaN 0 0 Median 1.2097 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4798200 2190200 2608000 0 0 0 4798200 2190200 2608000 0 0 0 0 0 0 0 0 0 0 0 0 30793 2900 32367 160963 161971 161971 1 SLLEPFVYLASK SEKVKLWEVSVADRRSLLEPFVYLASKMTQ DRRSLLEPFVYLASKMTQPQSKSAFPLSRK R S L S K M 1 0 0 0 0 0 1 0 0 0 3 1 0 1 1 2 0 0 1 1 0 0 12 0 1365.7544 H7BXP1;Q9NYR9;K7ERG2 H7BXP1 194 205 NKIRAS2 NF-kappa-B inhibitor-interacting Ras-like protein 2 yes no 2 0.0045424 43.297 By MS/MS By matching By matching 1 1 1 1.1252 0.93691 3.5307 3 Median 0.96666 0.90852 NaN 1 0 Median 1.1252 0.97482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1391 0.93691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3756200 2009800 1746400 3171200 1749800 1421400 171850 80604 91246 0 0 0 413160 179420 233740 0 0 0 0 0 0 30794 1243 32368 160964;160965;160966 161972;161973 161973 2 SLLESTYQR NNGATGGQLNTQNSRSLLESTYQRKAEQLM NTQNSRSLLESTYQRKAEQLMSDENCFKLM R S L Q R K 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 1095.556 Q96ST3 Q96ST3 1044 1052 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0008527 94.302 By MS/MS By MS/MS By MS/MS 1 1 2 1.212 1.1139 7.6404 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0186 1.1198 NaN 1 0 Median 1.2776 1.1218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2467 1.0306 10.234 2 1 Median 19773000 9349400 10424000 0 0 0 0 0 0 15302000 7269000 8033400 2210900 1070000 1140900 0 0 0 2259800 1010500 1249300 30795 3737 32369 160967;160968;160969;160970 161974;161975;161976;161977 161974 4 SLLFVNTLER LLLYALLKLSLIRGKSLLFVNTLERSYRLR LIRGKSLLFVNTLERSYRLRLFLEQFSIPT K S L E R S 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 10 0 1190.6659 Q9NY93;G3V0G3;H7C3E9 Q9NY93 261 270 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 0.00037009 81.594 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3254 1.2605 30.992 4 Median NaN NaN NaN 0 0 Median 2.5934 2.2804 NaN 1 0 Median 1.2409 1.3079 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1866 1.183 NaN 1 0 Median 1.4158 1.2148 NaN 1 0 Median 16165000 6937100 9227900 0 0 0 625540 186480 439060 1632700 710500 922210 0 0 0 12495000 5382400 7112500 1411900 657730 754150 30796 4173 32370 160971;160972;160973;160974 161978;161979;161980;161981 161979 4 SLLGKDVLFLK MPDKYSLEPVAVELKSLLGKDVLFLKDCVG VELKSLLGKDVLFLKDCVGPEVEKACANPA K S L L K D 0 0 0 1 0 0 0 1 0 0 4 2 0 1 0 1 0 0 0 1 0 0 11 1 1231.754 P00558;P07205 P00558 87 97 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2;3 0.0028474 56.563 By MS/MS By matching By matching 5 2 1 1.2944 1.2004 23.222 8 Median 1.2068 1.1254 25.804 5 0 Median 1.5375 1.3963 18.993 2 0 Median NaN NaN NaN 0 0 Median 1.2426 1.1803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35244000 16226000 19018000 27021000 12808000 14213000 3140000 1183900 1956100 0 0 0 5082700 2234400 2848200 0 0 0 0 0 0 30797 1824 32371 160975;160976;160977;160978;160979;160980;160981;160982 161982;161983;161984 161983 3 SLLGLGLPSGGFHDR VGDTKHGMMKFREDRSLLGLGLPSGGFHDR SLLGLGLPSGGFHDRYFILNSSCLRLYKEV R S L D R Y 0 1 0 1 0 0 0 4 1 0 4 0 0 1 1 2 0 0 0 0 0 0 15 0 1524.8049 E7EU13;Q96P48;A0A0A0MSJ2;F5GWQ2 E7EU13 1043 1057 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 3 0.029123 17.069 By MS/MS By MS/MS 1 2 0.90681 0.80235 7.8888 3 Median 0.88349 0.88732 NaN 1 0 Median 0.90772 0.78063 3.8812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3767900 1803100 1964800 1567200 660590 906560 2200700 1142500 1058200 0 0 0 0 0 0 0 0 0 0 0 0 30798 893 32372 160983;160984;160985 161985;161986 161985 2 SLLGMLSDLQVYK ERERSGEAVDRSLLRSLLGMLSDLQVYKDS LRSLLGMLSDLQVYKDSFELKFLEETNCLY R S L Y K D 0 0 0 1 0 1 0 1 0 0 4 1 1 0 0 2 0 0 1 1 0 0 13 0 1465.7851 Q13619;A0A0A0MR50 Q13619 216 228 CUL4A Cullin-4A yes no 2 0.00020224 81.338 By matching By MS/MS By matching By matching 1 1 1 1 0.9944 0.93829 32.311 4 Median 0.86695 0.88343 NaN 1 0 Median 1.1406 0.99656 NaN 1 0 Median 0.67341 0.70598 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.479 1.5237 NaN 1 0 Median NaN NaN NaN 0 0 Median 7602600 3510500 4092100 554140 278600 275530 6374500 2905600 3468900 292580 165520 127070 0 0 0 381400 160770 220630 0 0 0 30799 2832 32373 160986;160987;160988;160989 161987;161988 161987 2 SLLHGDFHAFSAGPGLFSYIR LSLFRRLSDQRSKERSLLHGDFHAFSAGPG FHAFSAGPGLFSYIRHWDQNERFLVVLNFG R S L I R H 2 1 0 1 0 0 0 3 2 1 3 0 0 3 1 3 0 0 1 0 0 0 21 0 2291.1487 F5GZS6;J3KPF3;P08195;F5GZI0 F5GZS6 504 524 SLC3A2 4F2 cell-surface antigen heavy chain yes no 3 2.7614E-25 112.55 By MS/MS By MS/MS 2 2 0.77086 0.66684 38.174 4 Median 0.84771 0.87011 60.438 2 0 Median 0.77086 0.66684 3.3347 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32026000 17617000 14409000 7293700 3980900 3312800 24733000 13636000 11097000 0 0 0 0 0 0 0 0 0 0 0 0 30800 1016 32374 160990;160991;160992;160993 161989;161990;161991;161992 161992 4 SLLIDFFR AGDDFDVTEDYRRLKSLLIDFFRGPTVSNI EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV K S L F R G 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q9H7B2;Q5VXN0 Q9H7B2 161 168 RPF2 Ribosome production factor 2 homolog yes no 2 0.044676 35.88 By matching By matching By matching By MS/MS By matching 1 2 1 2 1 1.2913 1.2382 17.519 7 Median 1.6018 1.5953 NaN 1 0 Median 1.6836 1.4818 11.959 2 0 Median 1.0487 1.0229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1597 1.195 5.0252 2 0 Median 1.2913 1.1264 NaN 1 0 Median 10262000 4716800 5545100 56712 20640 36072 360260 157490 202780 344640 141510 203130 0 0 0 8934300 4166500 4767800 565890 230600 335290 30801 3980 32375 160994;160995;160996;160997;160998;160999;161000 161993 161993 1 SLLIGVFK HAEVPADWWDKEADKSLLIGVFKHGYEKYN WDKEADKSLLIGVFKHGYEKYNSMRADPAL K S L F K H 0 0 0 0 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 1 0 0 8 0 875.54804 Q9HCK8;A0A2R8Y840;H0YJG4;C9JFU2;H7C294;A0A087WU44;Q9P2D1;H3BTW3;Q3L8U1;Q8TD26 Q9P2D1 1793 1800 CHD8;CHD6;CHD9;CHD7 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 6 no no 2 0.026977 41.502 By MS/MS By matching By matching 2 2 1 1.3057 1.2021 9.7912 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96253 1.0519 9.9512 2 0 Median 1.322 1.2058 0.44178 2 0 Median NaN NaN NaN 0 0 Median 1.4463 1.2578 NaN 1 0 Median 7321600 3657300 3664300 0 0 0 0 0 0 6842800 3454500 3388200 404390 171130 233250 0 0 0 74422 31653 42769 30802 4220;4030;3469 32376 161001;161002;161003;161004;161005 161994;161995 161995 2 SLLINAVEASCIR ATIHALHFLESGGFRSLLINAVEASCIRTR FRSLLINAVEASCIRTRELQSMADQEKISP R S L I R T 2 1 1 0 1 0 1 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1444.7708 Q96C36;A0A087WTV6;J3KR12;A0A087WZR9;P32322;E2QRB3;J3QKT4 Q96C36 252 264 PYCR2;PYCR1 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 1, mitochondrial no no 2 0.0029978 62.303 By MS/MS 1 0.78265 0.75108 NaN 1 Median 0.78265 0.75108 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3064300 1720000 1344300 3064300 1720000 1344300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30803 3615;2218 32377 161006 161996 161996 1 SLLIPYLDNLVK HAAAALINFTEDCPKSLLIPYLDNLVKHLH CPKSLLIPYLDNLVKHLHSIMVLKLQELIQ K S L V K H 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 1 0 0 1 1 0 0 12 0 1386.8123 O00410;H0Y8C6 O00410 476 487 IPO5 Importin-5 yes no 2 0.031417 27.742 By MS/MS By matching By matching By matching 3 2 2 1 1.0413 0.99642 18.087 8 Median 1.0338 1.0093 2.261 3 0 Median 1.0004 0.88043 11.633 2 0 Median 1.1843 1.2567 14.079 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95781 0.7865 NaN 1 0 Median 6628600 3403500 3225100 3966200 1980800 1985400 1661700 909270 752390 875700 439500 436200 0 0 0 0 0 0 125040 73933 51111 30804 1460 32378 161007;161008;161009;161010;161011;161012;161013;161014 161997;161998;161999 161997 3 SLLIQELSK NEQVKGKIDTMKKFKSLLIQELSKVFPEDM TMKKFKSLLIQELSKVFPEDMAKYRSIRGE K S L S K V 0 0 0 0 0 1 1 0 0 1 3 1 0 0 0 2 0 0 0 0 0 0 9 0 1029.607 Q9BTT4 Q9BTT4 107 115 MED10 Mediator of RNA polymerase II transcription subunit 10 yes yes 2 0.00094209 89.355 By matching By matching By MS/MS By MS/MS 1 2 1 1 1.1246 1.0191 16 5 Median 0.82194 0.77751 NaN 1 0 Median 1.3016 1.122 8.3876 2 0 Median 1.0623 1.0191 NaN 1 0 Median 1.1246 0.92233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12947000 6280500 6666800 2554600 1478100 1076500 1030400 440660 589720 8714100 4031000 4683200 648240 330800 317440 0 0 0 0 0 0 30805 3828 32379 161015;161016;161017;161018;161019 162000;162001;162002;162003 162001 4 SLLKQPIPEPK VQKLICQHIVPGNVKSLLKQPIPEPKGGRL GNVKSLLKQPIPEPKGGRLIQVEGYWIAVG K S L P K G 0 0 0 0 0 1 1 0 0 1 2 2 0 0 3 1 0 0 0 0 0 0 11 1 1248.7442 Q9NU22;Q5T795 Q9NU22 1021 1031 MDN1 Midasin yes no 3 0.0098795 31.185 By MS/MS 1 0.74004 0.84116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74004 0.84116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3028400 1791900 1236500 0 0 0 0 0 0 3028400 1791900 1236500 0 0 0 0 0 0 0 0 0 30806 4112 32380 161020 162004 162004 1 SLLLSVNAR ILTARPFRLDLLEDRSLLLSVNARGLLEFE DLLEDRSLLLSVNARGLLEFEHQRAPRVSQ R S L A R G 1 1 1 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 9 0 971.57638 E9PKU7;E9PNH1;Q14697;F5H6X6 Q14697 165 173 GANAB Neutral alpha-glucosidase AB no no 2 0.00056885 113.5 By MS/MS By MS/MS 6 4 1.0895 1.0616 23.425 10 Median 1.0645 1.0343 5.5514 6 0 Median 1.8847 1.5854 39.923 4 0 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128380000 55955000 72423000 103260000 46017000 57239000 25122000 9937500 15184000 0 0 0 0 0 0 0 0 0 0 0 0 30807 2896;951 32381 161021;161022;161023;161024;161025;161026;161027;161028;161029;161030 162005;162006;162007;162008;162009;162010;162011;162012;162013;162014;162015;162016 162005 12 SLLNEIESIYDER GINFKQNDTKVLRSKSLLNEIESIYDERQE SKSLLNEIESIYDERQEQATEENAGVPVGP K S L E R Q 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1579.773 Q96ST3 Q96ST3 748 760 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0015521 51.927 By matching By matching By MS/MS 1 1 1 1.1434 1.0287 6.5162 3 Median 1.1582 1.1472 NaN 1 0 Median 1.1434 1.0287 NaN 1 0 Median 0.94302 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1898800 903750 995080 372450 179490 192960 255530 92610 162910 1270800 631650 639200 0 0 0 0 0 0 0 0 0 30808 3737 32382 161031;161032;161033 162017;162018 162018 2 SLLNKPK ______________________________ ______________________________ M S L P K S 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 7 1 798.49634 P62316;K7ERG4 P62316 2 8 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes no 2 0.0043306 84.359 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 2 1 0.88542 0.88629 13.428 9 Median 0.78971 0.76391 17.356 2 0 Median 1.17 1.0243 8.0447 2 0 Median 0.84885 0.84229 NaN 1 0 Median 1.1 0.92263 NaN 1 0 Median 0.87895 0.94291 8.7576 2 0 Median 0.98359 0.84381 NaN 1 0 Median 464770000 236870000 227900000 16925000 9599800 7324900 60923000 28511000 32411000 190030000 101030000 88998000 114390000 53635000 60759000 73627000 39969000 33657000 8873900 4120400 4753500 30809 2586 32383 161034;161035;161036;161037;161038;161039;161040;161041;161042 162019;162020;162021;162022;162023;162024;162025;162026;162027;162028;162029;162030;162031;162032 162029 14 SLLNLLSSQEEDFNSK SVTQRTAFQIRQFQRSLLNLLSSQEEDFNS LLNLLSSQEEDFNSKEALLLVTVLTSLSKL R S L S K E 0 0 2 1 0 1 2 0 0 0 4 1 0 1 0 4 0 0 0 0 0 0 16 0 1822.8949 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 965 980 FANCI Fanconi anemia group I protein yes no 2 2.4911E-51 185.59 By MS/MS By MS/MS 1 1 1.0798 1.0519 29.026 2 Median NaN NaN NaN 0 0 Median 0.97346 0.85672 NaN 1 1 Median 1.1977 1.2915 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3834300 1833700 2000600 0 0 0 1726200 796620 929550 2108100 1037000 1071100 0 0 0 0 0 0 0 0 0 30810 4132 32384 161043;161044 162033;162034 162034 2 SLLPNYTMEGERPEEGVAGGLNR LSPISHGNTIALFFRSLLPNYTMEGERPEE EGERPEEGVAGGLNRNQGLNRLMLAVRDMM R S L N R N 1 2 2 0 0 0 4 4 0 0 3 0 1 0 2 1 1 0 1 1 0 0 23 1 2488.2016 Q9BQ70 Q9BQ70 616 638 TCF25 Transcription factor 25 yes yes 3 0.0034331 31.488 By MS/MS 1 0.63215 0.64814 NaN 1 Median 0.63215 0.64814 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6224300 4038800 2185500 6224300 4038800 2185500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30811 3786 32385 161045 162035 162035 1 SLLPVKPVEIEIETPEQAK EPVLGDVRESTAFSRSLLPVKPVEIEIETP VKPVEIEIETPEQAKTRERSEKIKLEFETY R S L A K T 1 0 0 0 0 1 4 0 0 2 2 2 0 0 3 1 1 0 0 2 0 0 19 1 2119.1776 Q01831;E7EUB5 Q01831 156 174 XPC DNA repair protein complementing XP-C cells yes no 3 0.00063502 31.818 By MS/MS 2 0.45703 0.52372 29.745 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45703 0.52372 29.745 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6767200 4473200 2294000 0 0 0 0 0 0 6767200 4473200 2294000 0 0 0 0 0 0 0 0 0 30812 2693 32386 161046;161047 162036;162037;162038 162036 3 SLLQALNEVK KLQGEFQLRLRQLEKSLLQALNEVKGRILD RQLEKSLLQALNEVKGRILDDDTIITTLEN K S L V K G 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1113.6394 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3748 3757 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00034654 107.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 1 1.098 1.1077 15.208 8 Median 1.0325 1.0155 6.378 2 1 Median 1.1402 1.0183 NaN 1 0 Median 1.0428 1.1334 1.5061 2 0 Median 1.2194 1.2095 NaN 1 0 Median 1.5194 1.5951 NaN 1 0 Median 1.2747 1.0942 NaN 1 0 Median 281440000 129480000 151960000 79234000 37114000 42120000 34835000 16201000 18634000 153020000 70304000 82713000 9354600 3967000 5387600 4109600 1503800 2605800 893160 392960 500200 30813 2865 32387 161048;161049;161050;161051;161052;161053;161054;161055 162039;162040;162041;162042;162043;162044;162045;162046;162047;162048;162049;162050;162051;162052;162053;162054;162055 162043 17 SLLQFLR MASVSSATFSGHGARSLLQFLRLVGQLKRV TFSGHGARSLLQFLRLVGQLKRVPRTGWVY R S L L R L 0 1 0 0 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 7 0 875.52289 Q7Z4H3;V9GYS5;V9GZ04 Q7Z4H3 16 22 HDDC2 HD domain-containing protein 2 yes no 2 0.023603 56.51 By MS/MS 1 1.205 1.1442 NaN 1 Median 1.205 1.1442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17808000 8066500 9741900 17808000 8066500 9741900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30814 3245 32388 161056 162056;162057 162057 2 SLLQGTIQMIQER PGRIVAIAVGDSAAKSLLQGTIQMIQERLG AKSLLQGTIQMIQERLGSELIQGLGYRQAW K S L E R L 0 1 0 0 0 3 1 1 0 2 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1515.8079 F5H6B2;Q9UHN6 F5H6B2 321 333 TMEM2 Transmembrane protein 2 yes no 2 0.0038536 42.743 By MS/MS By matching 1 1 1.4995 1.3911 20.159 2 Median 1.5966 1.6042 NaN 1 0 Median 1.4083 1.2063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2197800 833420 1364400 1414600 520910 893720 783190 312510 470690 0 0 0 0 0 0 0 0 0 0 0 0 30815 1041 32389 161057;161058 162058 162058 1 SLLQWVTSR AALVILKRERSLNLKSLLQWVTSRQMRFEG RSLNLKSLLQWVTSRQMRFEGGFQGRCNKL K S L S R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 2 1 1 0 1 0 0 9 0 1088.5978 B4DL54;P49356 B4DL54 306 314 CHURC1-FNTB;FNTB Protein farnesyltransferase subunit beta yes no 2 0.04318 32.841 By MS/MS By matching 1 1 1.0617 0.99328 15.942 2 Median 1.0857 1.1118 NaN 1 0 Median 1.0382 0.88739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2190200 1073600 1116600 804190 380320 423870 1386000 693290 692700 0 0 0 0 0 0 0 0 0 0 0 0 30816 597 32390 161059;161060 162059 162059 1 SLLSAEEAAK LSKVHFTAERSSYYKSLLSAEEAAKQKKEK SSYYKSLLSAEEAAKQKKEKVWAHYEEQPV K S L A K Q 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 1017.5342 Q7KZF4 Q7KZF4 642 651 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00041856 121.05 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1076 1.0485 7.9254 4 Median 0.96192 0.92652 NaN 1 0 Median 1.2118 1.0163 NaN 1 0 Median 1.0123 1.1059 NaN 1 0 Median 1.2432 1.0817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91456000 40710000 50746000 23101000 11191000 11911000 51136000 21649000 29487000 9834800 4500900 5333900 7383500 3369100 4014400 0 0 0 0 0 0 30817 3214 32391 161061;161062;161063;161064;161065 162060;162061;162062;162063;162064;162065;162066;162067;162068 162060 9 SLLSELSDPVELR HAGTYSCRYRTGGPRSLLSELSDPVELRVA PRSLLSELSDPVELRVAGS___________ R S L L R V 0 1 0 1 0 0 2 0 0 0 4 0 0 0 1 3 0 0 0 1 0 0 13 0 1456.7773 CON__Q2KJF1 CON__Q2KJF1 487 499 yes yes 2 0.0028084 63.283 By MS/MS 1 0.042372 0.036711 NaN 1 Median NaN NaN NaN 0 0 Median 0.042372 0.036711 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2351100 2179600 171530 0 0 0 2351100 2179600 171530 0 0 0 0 0 0 0 0 0 0 0 0 + 30818 773 32392 161066 162069 162069 1 SLLSILQR RNLCYHAQTRHWVIRSLLSILQRSSESELC TRHWVIRSLLSILQRSSESELCIETPKLTT R S L Q R S 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 2 0 0 0 0 0 0 8 0 928.57057 Q7Z6Z7;H0Y659 Q7Z6Z7 3225 3232 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 4.493E-06 166.34 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 1.3448 1.222 35.077 7 Median 1.0827 1.0528 10.121 2 0 Median 1.3626 1.1462 9.0579 2 0 Median 1.294 1.4529 NaN 1 0 Median 1.5873 1.3758 NaN 1 0 Median 2.7705 2.8089 NaN 1 0 Median NaN NaN NaN 0 0 Median 51608000 22204000 29404000 17753000 8014700 9738600 32490000 13693000 18797000 898830 371970 526860 50383 17339 33044 415560 107180 308390 0 0 0 30819 3253 32393 161067;161068;161069;161070;161071;161072;161073 162070;162071;162072;162073;162074 162071 5 SLLSLPEKEDK FNEMLQRDFGVRIYKSLLSLPEKEDKKEKD RIYKSLLSLPEKEDKKEKDKKSKKDERKDK K S L D K K 0 0 0 1 0 0 2 0 0 0 3 2 0 0 1 2 0 0 0 0 0 0 11 1 1257.6816 Q8IX12;A0A0C4DGG8;F5H1H2 Q8IX12 789 799 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 3 0.0024245 42.095 By matching By MS/MS By matching By matching 1 1 1 1 1.1448 1.0905 77.174 3 Median 0.41969 0.41215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1448 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.097 1.8923 NaN 1 0 Median 7201600 3542000 3659700 1916900 1218300 698580 0 0 0 0 0 0 2646300 1261600 1384700 867910 553560 314350 1770500 508480 1262000 30820 3331 32394 161074;161075;161076;161077 162075 162075 1 SLLSLPEKEDKK FNEMLQRDFGVRIYKSLLSLPEKEDKKEKD IYKSLLSLPEKEDKKEKDKKSKKDERKDKK K S L K K E 0 0 0 1 0 0 2 0 0 0 3 3 0 0 1 2 0 0 0 0 0 0 12 2 1385.7766 Q8IX12;A0A0C4DGG8;F5H1H2 Q8IX12 789 800 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 3 1.5994E-06 101.71 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.78212 0.91682 21.665 6 Median NaN NaN NaN 0 0 Median 0.71721 0.68116 NaN 1 0 Median 0.75773 0.91739 6.6364 2 0 Median 0.85309 0.88915 10.882 2 0 Median 1.1511 1.3117 NaN 1 0 Median NaN NaN NaN 0 0 Median 31368000 16482000 14887000 0 0 0 3124900 1847200 1277700 14941000 8248600 6692600 10841000 5659000 5181500 2461700 726790 1734900 0 0 0 30821 3331 32395 161078;161079;161080;161081;161082;161083 162076;162077;162078;162079;162080;162081 162077 6 SLLSMLVEVHK PSAARLPSLWADNKRSLLSMLVEVHKGVHG DNKRSLLSMLVEVHKGVHGFVKDKTGKPIS R S L H K G 0 0 0 0 0 0 1 0 1 0 3 1 1 0 0 2 0 0 0 2 0 0 11 0 1254.7006 O75976 O75976 1203 1213 CPD Carboxypeptidase D yes yes 2;3 0.03474 29.81 By MS/MS By matching 2 1 1.2301 1.1665 27.755 3 Median 0.98408 0.92951 32.113 2 0 Median 1.3974 1.2255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2889800 1337200 1552600 2627300 1231000 1396300 262560 106280 156270 0 0 0 0 0 0 0 0 0 0 0 0 30822 1714 32396 161084;161085;161086 162082;162083 162082 2 SLLSNLDEVKK PAKTMQGSEVVNVLKSLLSNLDEVKKEREG NVLKSLLSNLDEVKKEREGLENDLKSVNFD K S L K K E 0 0 1 1 0 0 1 0 0 0 3 2 0 0 0 2 0 0 0 1 0 0 11 1 1244.6976 Q8WUM4 Q8WUM4 554 564 PDCD6IP Programmed cell death 6-interacting protein yes yes 2;3 0.00013417 67.153 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1.2153 1.2794 46.534 6 Median 1.0648 1.1178 6.0267 2 1 Median 1.6228 1.5503 43.922 2 0 Median 1.2275 1.4033 NaN 1 1 Median NaN NaN NaN 0 0 Median 3.1252 3.4995 NaN 1 1 Median NaN NaN NaN 0 0 Median 24841000 10768000 14072000 15811000 7426400 8384300 1608900 666420 942450 4637300 2095600 2541700 0 0 0 2783900 580140 2203800 0 0 0 30823 3493 32397 161087;161088;161089;161090;161091;161092;161093 162084;162085;162086;162087;162088;162089 162084 6 SLLSQMLHYDPNKR QDFSKVVPPLDEDGRSLLSQMLHYDPNKRI RSLLSQMLHYDPNKRISAKAALAHPFFQDV R S L K R I 0 1 1 1 0 1 0 0 1 0 3 1 1 0 1 2 0 0 1 0 0 0 14 1 1700.8668 G3V5T9;P24941;E7ESI2 G3V5T9 309 322 CDK2 Cyclin-dependent kinase 2 yes no 3;4 0.00019919 58.752 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0687 1.1636 28.544 5 Median 0.90548 0.89664 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1761 1.2894 14.517 2 0 Median 1.0131 0.95607 NaN 1 0 Median 1.6649 1.7858 NaN 1 0 Median NaN NaN NaN 0 0 Median 8197800 3879400 4318400 1774100 825230 948890 0 0 0 5279000 2558200 2720800 392170 194830 197350 752450 301160 451290 0 0 0 30824 1120 32398 161094;161095;161096;161097;161098 162090;162091 162091 2 SLLTEADAGHTEFTDEVYQNESR KGWEWEGEWIVDPERSLLTEADAGHTEFTD GHTEFTDEVYQNESRYPGGDWKPAEDTYTD R S L S R Y 2 1 1 2 0 1 4 1 1 0 2 0 0 1 0 2 3 0 1 1 0 0 23 0 2611.1674 Q9NZM1;H0YD14 Q9NZM1 918 940 MYOF Myoferlin yes no 3 4.272E-18 80.67 By MS/MS By matching 1 1 1.0716 0.96038 57.875 2 Median 1.5233 1.446 NaN 1 0 Median 0.75387 0.63784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6615000 2689200 3925800 5665400 2095400 3570000 949630 593830 355790 0 0 0 0 0 0 0 0 0 0 0 0 30825 4192 32399 161099;161100 162092;162093 162092 2 SLLTSTINSIK CVRHADYLNDDQKVRSLLTSTINSIKKVLK QKVRSLLTSTINSIKKVLKKRGDDFETVSF R S L I K K 0 0 1 0 0 0 0 0 0 2 2 1 0 0 0 3 2 0 0 0 0 0 11 0 1175.6762 A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1;E7ERV5 A0A087WY00 1504 1514 MYO5A Unconventional myosin-Va yes no 2 0.0073128 42.599 By MS/MS 1 1.9435 1.8699 NaN 1 Median 1.9435 1.8699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6233700 1619400 4614300 6233700 1619400 4614300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30826 74 32400 161101 162094 162094 1 SLLTYGR SHLDGTTPVCEDIGRSLLTYGRRIPLAEWE PVCEDIGRSLLTYGRRIPLAEWESRIAEVD R S L G R R 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 7 0 808.4443 P31930 P31930 416 422 UQCRC1 Cytochrome b-c1 complex subunit 1, mitochondrial yes yes 2 0.0023577 107.74 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.3759 1.3053 19.023 5 Median 1.3742 1.3082 1.6993 2 0 Median 2.3423 1.9708 NaN 1 0 Median 1.2943 1.3053 NaN 1 0 Median 1.4411 1.2464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28793000 11462000 17331000 8892700 4012600 4880200 11153000 3901000 7252300 2583500 998900 1584600 6163300 2549400 3614000 0 0 0 0 0 0 30827 2205 32401 161102;161103;161104;161105;161106 162095;162096;162097;162098;162099;162100 162100 6 SLLVIPNTLAVNAAQDSTDLVAK SMGSREQLAIAEFARSLLVIPNTLAVNAAQ LAVNAAQDSTDLVAKLRAFHNEAQVNPERK R S L A K L 4 0 2 2 0 1 0 0 0 1 4 1 0 0 1 2 2 0 0 3 0 0 23 0 2352.29 P17987;E7EQR6;F5H282 P17987 444 466 TCP1 T-complex protein 1 subunit alpha yes no 2;3 1.4486E-30 121.99 By MS/MS By MS/MS By MS/MS By matching 8 5 2 1 0.9489 0.8806 11.594 16 Median 0.89249 0.87403 9.3389 8 0 Median 1.0174 0.89711 5.0677 5 0 Median 1.0031 1.02 8.746 2 0 Median 0.76348 0.67686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84984000 41097000 43886000 63694000 30976000 32718000 13778000 6513400 7264300 7444400 3574200 3870100 67364 33874 33490 0 0 0 0 0 0 30828 2051 32402 161107;161108;161109;161110;161111;161112;161113;161114;161115;161116;161117;161118;161119;161120;161121;161122 162101;162102;162103;162104;162105;162106;162107;162108;162109;162110;162111;162112;162113;162114;162115 162115 15 SLLVNPEGPTLMR KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN LRSLLVNPEGPTLMRLNSVQSSERPLFLVH R S L M R L 0 1 1 0 0 0 1 1 0 0 3 0 1 0 2 1 1 0 0 1 0 0 13 0 1425.765 P49327;A0A0U1RQF0 P49327 2221 2233 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 6.9184E-10 170.99 By MS/MS By MS/MS By matching By matching 5 5 1 2 0.9469 0.78116 41.018 13 Median 0.76772 0.71992 4.338 5 0 Median 1.0344 0.83392 5.8884 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.9032 3.2856 NaN 1 0 Median 0.89926 0.73724 8.1833 2 0 Median 337860000 176720000 161130000 232550000 127890000 104660000 99609000 47873000 51736000 0 0 0 0 0 0 5382200 824740 4557500 315620 139150 176460 30829 2377 32403;32404 161123;161124;161125;161126;161127;161128;161129;161130;161131;161132;161133;161134;161135 162116;162117;162118;162119;162120;162121;162122;162123;162124;162125;162126;162127;162128;162129;162130;162131;162132;162133;162134 162117 1091 19 SLLVNPVLFPNR PDAKHVFTTFYAKTKSLLVNPVLFPNREDY KTKSLLVNPVLFPNREDYIHLMGYDKEEFI K S L N R E 0 1 2 0 0 0 0 0 0 0 3 0 0 1 2 1 0 0 0 2 0 0 12 0 1367.7925 Q9BUB7 Q9BUB7 218 229 TMEM70 Transmembrane protein 70, mitochondrial yes yes 2 0.00033872 81.594 By MS/MS By matching 1 1 0.75677 0.73294 5.7013 2 Median 0.70048 0.70398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81759 0.76309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2796300 1607600 1188700 2489900 1466700 1023100 0 0 0 306400 140820 165580 0 0 0 0 0 0 0 0 0 30830 3837 32405 161136;161137 162135;162136 162135 2 SLLVPDHVITR ASTEVGEMAKQYIEKSLLVPDHVITRLMMS YIEKSLLVPDHVITRLMMSELENRRGQHWL K S L T R L 0 1 0 1 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 2 0 0 11 0 1248.719 P27144;D3DQ64 P27144 61 71 AK4 Adenylate kinase 4, mitochondrial yes no 2;3 0.00035099 96.89 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 3 1 1 0.86667 0.87409 31.613 12 Median 0.81189 0.7713 27.059 4 2 Median 1.2729 1.0778 14.968 3 0 Plateau 0.77818 0.90056 13.494 3 0 Plateau NaN NaN NaN 0 0 Median 2.0129 1.9725 NaN 1 0 Median 0.86107 0.69855 NaN 1 0 Median 89655000 47079000 42576000 71025000 38225000 32799000 7141900 2912400 4229500 8770800 4933000 3837800 0 0 0 1646400 532050 1114400 1071400 476340 595080 30831 2151 32406 161138;161139;161140;161141;161142;161143;161144;161145;161146;161147;161148;161149 162137;162138;162139;162140;162141;162142;162143;162144 162140 8 SLLVTELGSSR NGQKLQVSQQEDITKSLLVTELGSSRTPET DITKSLLVTELGSSRTPETVRMVLSNMEKL K S L S R T 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 3 1 0 0 1 0 0 11 0 1160.6401 P29218;E5RIP7;H0YBL1;E5RG13 P29218 157 167 IMPA1 Inositol monophosphatase 1 yes no 2 0.00015771 90.15 By MS/MS By MS/MS By MS/MS 4 1 2 1.0985 1.0277 70.468 7 Median 0.85277 0.82493 84.866 4 1 Median 1.3123 1.1098 NaN 1 0 Median 1.2614 1.1948 2.5476 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59395000 28277000 31118000 45650000 22099000 23552000 8573200 3801400 4771800 5171700 2377200 2794500 0 0 0 0 0 0 0 0 0 30832 2169 32407 161150;161151;161152;161153;161154;161155;161156 162145;162146;162147;162148;162149;162150;162151 162146 7 SLLVVSDLFTER SARRTPAILISEVVRSLLVVSDLFTERNQF VVRSLLVVSDLFTERNQFELMYVTLTELRR R S L E R N 0 1 0 1 0 0 1 0 0 0 3 0 0 1 0 2 1 0 0 2 0 0 12 0 1377.7504 P42858 P42858 2703 2714 HTT Huntingtin yes yes 2 0.046247 44.318 By MS/MS 1 1.1979 1.1981 NaN 1 Median 1.1979 1.1981 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1068500 412640 655910 1068500 412640 655910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30833 2319 32408 161157 162152 162152 1 SLMDQYFAR IMRTVGPRLDHERAKSLMDQYFARMCSLML DHERAKSLMDQYFARMCSLMLSKELPARIR K S L A R M 1 1 0 1 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 9 0 1129.5226 P78344;D3DQV9;H0Y3P2;H0YCH5;H0YD77 P78344 272 280 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00097881 87.323 By MS/MS By matching By MS/MS By matching 2 2 1 3 1.1851 1.1244 22.684 8 Median 0.94371 0.93747 3.7891 2 0 Median 1.0619 0.93921 21.622 2 0 Median 1.1496 1.234 NaN 1 0 Median 1.7113 1.4887 15.393 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11637000 5754400 5882300 8423900 4255000 4168900 1389000 710810 678240 1438100 636600 801530 385610 151940 233670 0 0 0 0 0 0 30834 2639 32409 161158;161159;161160;161161;161162;161163;161164;161165 162153;162154;162155 162153 3 SLMEQDVKENEALLLR LDKAKINQGWLDSSRSLMEQDVKENEALLL LMEQDVKENEALLLRFKYYSFFDLNPKYDA R S L L R F 1 1 1 1 0 1 3 0 0 0 4 1 1 0 0 1 0 0 0 1 0 0 16 1 1886.9772 H0YJ34;Q96AC1;A0A0U1RRM8 H0YJ34 211 226 FERMT2 Fermitin family homolog 2 yes no 2 7.3901E-10 162.68 By MS/MS 1 1.2436 1.283 NaN 1 Median 1.2436 1.283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6144800 2551700 3593100 6144800 2551700 3593100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30835 1184 32410 161166 162156 162156 1 SLMGMDWK NGQLDIIVAAALTERSLMGMDWKGSQEYKK AAALTERSLMGMDWKGSQEYKKAEKKVWKI R S L W K G 0 0 0 1 0 0 0 1 0 0 1 1 2 0 0 1 0 1 0 0 0 0 8 0 966.43031 Q9H3G5;H7C0X5;H7C218 Q9H3G5 399 406 CPVL Probable serine carboxypeptidase CPVL yes no 2 0.024653 43.246 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.5576 1.3671 35.501 5 Median 1.1529 1.0965 NaN 1 0 Median 1.7536 1.5193 NaN 1 0 Median 1.0093 0.99768 NaN 1 0 Median 2.079 1.8379 41.854 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9342300 3622100 5720100 3758800 1155800 2603000 1460200 564890 895290 3844100 1821800 2022300 279210 79714 199500 0 0 0 0 0 0 30836 3952 32411 161167;161168;161169;161170;161171 162157;162158 162158 2 SLMIQTLEAVK FTNMMMIGGNKVLARSLMIQTLEAVKRKQF VLARSLMIQTLEAVKRKQFEKYHAASAEEQ R S L V K R 1 0 0 0 0 1 1 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 11 0 1231.6846 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 J3QLS3 138 148 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2 0.0012178 82.287 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.78211 0.70279 45.34 4 Median 0.47068 0.43673 NaN 1 1 Median 1.0834 0.91079 NaN 1 0 Median 0.5646 0.54229 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1388 1.1658 NaN 1 0 Median NaN NaN NaN 0 0 Median 29967000 19136000 10831000 21044000 14473000 6571400 4924800 2647700 2277000 2373200 1352200 1021000 0 0 0 1624900 663740 961130 0 0 0 30837 1341 32412 161172;161173;161174;161175 162159;162160 162159 2 SLMIQTLEAVKR FTNMMMIGGNKVLARSLMIQTLEAVKRKQF LARSLMIQTLEAVKRKQFEKYHAASAEEQA R S L K R K 1 1 0 0 0 1 1 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 12 1 1387.7857 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 J3QLS3 138 149 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 6.8635E-06 114.5 By MS/MS By matching By matching By matching 2 2 1 1 1.2345 1.1445 17.386 6 Median 0.93719 0.98084 0.63578 2 0 Median 1.236 1.1693 11.337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4656 1.5386 NaN 1 0 Median 1.3361 1.2136 NaN 1 0 Median 16569000 7535100 9033400 14729000 6756300 7972500 841580 385870 455710 0 0 0 0 0 0 762670 254690 507990 235450 138180 97269 30838 1341 32413 161176;161177;161178;161179;161180;161181 162161;162162 162162 2 SLMPYFLLTQAVR EIPDRLQFRQPSLKRSLMPYFLLTQAVRTG KRSLMPYFLLTQAVRTGNLAKFNQVLDQFG R S L V R T 1 1 0 0 0 1 0 0 0 0 3 0 1 1 1 1 1 0 1 1 0 0 13 0 1537.8327 O43242 O43242 356 368 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.00015584 83 By MS/MS By MS/MS By MS/MS 8 3 1 1.0337 0.99737 10.887 11 Median 1.0284 0.99737 6.9466 7 0 Median 1.2896 1.0914 13.949 3 0 Plateau 1.1768 1.2343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42484000 20488000 21996000 38187000 18552000 19635000 3439800 1531500 1908300 857450 404520 452940 0 0 0 0 0 0 0 0 0 30839 1560 32414;32415 161182;161183;161184;161185;161186;161187;161188;161189;161190;161191;161192;161193 162163;162164;162165;162166;162167;162168;162169;162170;162171;162172;162173;162174;162175;162176;162177 162173 503 15 SLMSADNVR HESVQWCYDNFINYRSLMSADNVRQQLSRI NFINYRSLMSADNVRQQLSRIMDRFNLPRR R S L V R Q 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 9 0 991.47568 O43143 O43143 653 661 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00060862 109.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 2 1.1835 1.0602 13.235 7 Median 1.0483 0.99168 NaN 1 0 Median 1.2265 1.0602 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4407 1.2416 NaN 1 0 Median 1.1038 1.1136 10.486 2 0 Median 1.1819 0.95856 19.896 2 0 Median 61314000 27869000 33445000 15328000 6852100 8476200 12362000 5619000 6742900 0 0 0 3286600 1317500 1969100 25364000 11842000 13521000 4973800 2238400 2735300 30840 1553 32416 161194;161195;161196;161197;161198;161199;161200;161201;161202 162178;162179;162180;162181;162182;162183;162184;162185;162186;162187 162181 10 SLMSLGNEAEEK LADGIRIWMLEMKQKSLMSLGNEAEEKHSS KQKSLMSLGNEAEEKHSSEATEVNPESLAK K S L E K H 1 0 1 0 0 0 3 1 0 0 2 1 1 0 0 2 0 0 0 0 0 0 12 0 1306.6075 O43149 O43149 1392 1403 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 yes yes 2 0.00044042 78.655 By MS/MS 1 1.1128 1.107 NaN 1 Median 1.1128 1.107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5337500 2775400 2562100 5337500 2775400 2562100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30841 1555 32417 161203 162188 162188 1 SLMYWLDPNLR LFLVFLLFLNFEQVKSLMYWLDPNLRYATR EQVKSLMYWLDPNLRYATREADVMEYAVNC K S L L R Y 0 1 1 1 0 0 0 0 0 0 3 0 1 0 1 1 0 1 1 0 0 0 11 0 1406.7017 P48651 P48651 128 138 PTDSS1 Phosphatidylserine synthase 1 yes yes 2 0.0054074 47.198 By MS/MS By MS/MS 1 1 1.3807 1.287 25.541 2 Median 1.0614 1.0743 NaN 1 0 Median 1.7961 1.5417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2979700 1340500 1639200 2154600 1064200 1090400 825110 276300 548820 0 0 0 0 0 0 0 0 0 0 0 0 30842 2365 32418 161204;161205 162189;162190;162191 162190 3 SLNDLIEER NDGSLCLAMEYGGEKSLNDLIEERYKASQD EYGGEKSLNDLIEERYKASQDPFPAAIILK K S L E R Y 0 1 1 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1087.551 Q96KB5;E5RFX4 Q96KB5 122 130 PBK Lymphokine-activated killer T-cell-originated protein kinase yes no 2 0.001584 79.906 By MS/MS 1 1.1751 1.1672 NaN 1 Median 1.1751 1.1672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7642100 3565200 4076800 7642100 3565200 4076800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30843 3692 32419 161206 162192;162193 162192 2 SLNEFLEEKR NSLLTILDQLQRCQKSLNEFLEEKRSAFPR QRCQKSLNEFLEEKRSAFPRFYFIGDDDLL K S L K R S 0 1 1 0 0 0 3 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1263.6459 Q8NCM8 Q8NCM8 1414 1423 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 3 0.0031043 40.589 By MS/MS By matching By matching 1 1 1 0.93448 0.94639 15.409 3 Median 0.89136 0.91554 NaN 1 0 Median 1.2709 1.2137 NaN 1 0 Median 0.93448 0.94639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8188000 3941700 4246300 3683100 1985700 1697500 2333100 758560 1574500 2171700 1197400 974290 0 0 0 0 0 0 0 0 0 30844 3418 32420 161207;161208;161209 162194 162194 1 SLNESKIEIER LRNEHFQKAIEDKSRSLNESKIEIERLQSL DKSRSLNESKIEIERLQSLTENLTKEHLML R S L E R L 0 1 1 0 0 0 3 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 11 1 1316.6936 P15924 P15924 1695 1705 DSP Desmoplakin yes yes 2;3 0.0010068 98.249 By matching By MS/MS By MS/MS 1 2 1 0.81092 0.81265 53.444 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7997 1.9102 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54884 0.62079 6.3987 2 0 Median 1.1446 1.0167 NaN 1 0 Median 14694000 7324500 7369900 0 0 0 0 0 0 3814200 1243300 2570900 0 0 0 8965100 5307300 3657700 1915200 773850 1141300 30845 2021 32421 161210;161211;161212;161213 162195;162196;162197 162196 2 SLNIKTDPVDIYK RQILAPVVKEIMDDKSLNIKTDPVDIYKSW DKSLNIKTDPVDIYKSWVNQMESQTGEASK K S L Y K S 0 0 1 2 0 0 0 0 0 2 1 2 0 0 1 1 1 0 1 1 0 0 13 1 1504.8137 P46940;A0A0J9YXZ5;H0YLE8 P46940 1084 1096 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.000685 83.397 By MS/MS 1 0.87822 0.85747 NaN 1 Median 0.87822 0.85747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7123700 4093300 3030400 7123700 4093300 3030400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30846 2350 32422 161214 162198;162199 162198 2 SLNILTAFQK EKNKMSDGKKEELQKSLNILTAFQKKGAEK EELQKSLNILTAFQKKGAEKEEL_______ K S L Q K K 1 0 1 0 0 1 0 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1133.6445 P30040;F8VY02 P30040 244 253 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 0.0046436 52.482 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1 1.4024 1.2155 8.3442 7 Median 1.1735 1.0839 NaN 1 0 Median 1.4259 1.2163 0.090876 2 0 Median 1.1785 1.1054 NaN 1 0 Median 1.4385 1.1926 NaN 1 0 Median 1.33 1.366 NaN 1 0 Median 1.56 1.3118 NaN 1 0 Median 107890000 47024000 60865000 49700000 22090000 27611000 6330700 2580400 3750300 41616000 18184000 23431000 6088800 2414700 3674200 3206100 1355300 1850800 947660 399980 547680 30847 2178 32423 161215;161216;161217;161218;161219;161220;161221 162200;162201;162202;162203;162204;162205;162206;162207;162208 162200 9 SLNLPVGSSQVLVPR DWDPYVPKIFTRILRSLNLPVGSSQVLVPR SLNLPVGSSQVLVPRFLTNAYDIGHAVIWI R S L P R F 0 1 1 0 0 1 0 1 0 0 3 0 0 0 2 3 0 0 0 3 0 0 15 0 1564.8937 Q14997;F8WBH5 Q14997 286 300 PSME4 Proteasome activator complex subunit 4 yes no 2 7.4307E-05 82.171 By MS/MS By matching 1 1 0.66776 0.59376 12.847 2 Median 0.68965 0.65022 NaN 1 0 Median 0.64656 0.5422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9162000 5378100 3783800 7422200 4354500 3067700 1739800 1023600 716170 0 0 0 0 0 0 0 0 0 0 0 0 30848 2906 32424 161222;161223 162209;162210 162210 2 SLNNFISQR MEDLGENTMVLSTLRSLNNFISQRVEGGSG VLSTLRSLNNFISQRVEGGSGLDISTSAPG R S L Q R V 0 1 2 0 0 1 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 9 0 1077.5567 Q9Y6D9;C9JIR0;C9JJ38 Q9Y6D9 16 24 MAD1L1 Mitotic spindle assembly checkpoint protein MAD1 yes no 2 0.0014243 90.657 By MS/MS 1 0.80727 0.77352 NaN 1 Median 0.80727 0.77352 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4902800 2554000 2348800 4902800 2554000 2348800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30849 4490 32425 161224 162211 162211 1 SLNNQFASFIDK PEIQKVKSREREQIKSLNNQFASFIDKVRF QIKSLNNQFASFIDKVRFLEQQNQVLQTKW K S L D K V 1 0 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 0 0 0 12 0 1382.683 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 186 197 KRT1 Keratin, type II cytoskeletal 1 no no 2 2.0322E-21 157.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 10 9 5 4 0.012308 0.0116 102.35 43 Median 0.012647 0.0116 87.017 7 7 Median 0.011742 0.0097549 102.36 8 8 Median 0.020604 0.020599 57.748 10 10 Median 0.0074842 0.0062067 134.81 9 9 Median 0.012371 0.013316 90.398 5 5 Median 0.0048376 0.0040627 76.683 4 4 Median 2147400000 2114100000 33289000 589760000 582180000 7577100 238930000 234570000 4355800 619220000 609450000 9777200 246320000 238720000 7602200 339400000 335920000 3483600 113750000 113260000 493060 + 30850 1848;735 32426 161225;161226;161227;161228;161229;161230;161231;161232;161233;161234;161235;161236;161237;161238;161239;161240;161241;161242;161243;161244;161245;161246;161247;161248;161249;161250;161251;161252;161253;161254;161255;161256;161257;161258;161259;161260;161261;161262;161263;161264;161265;161266;161267 162212;162213;162214;162215;162216;162217;162218;162219;162220;162221;162222;162223;162224;162225;162226;162227;162228;162229;162230;162231;162232;162233;162234;162235;162236;162237;162238;162239;162240;162241;162242;162243;162244;162245;162246;162247;162248;162249;162250;162251;162252;162253;162254;162255;162256;162257;162258;162259;162260;162261;162262;162263;162264;162265;162266;162267;162268;162269;162270;162271;162272;162273;162274 162257 63 SLNNQFASFIDKVR PEIQKVKSREREQIKSLNNQFASFIDKVRF KSLNNQFASFIDKVRFLEQQNQVLQTKWEL K S L V R F 1 1 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 1 0 0 14 1 1637.8526 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 186 199 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 5.2711E-98 230.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 2 9 2 11 0.01871 0.020224 127.99 32 Median 0.014624 0.01556 102.36 13 13 Median 0.28021 0.25888 55.239 2 2 Median 0.036896 0.04278 154.6 7 7 Median 0.022002 0.020949 64.793 2 2 Median 0.01871 0.020895 112.83 8 8 Median NaN NaN NaN 0 0 Median 947840000 935330000 12510000 383550000 378700000 4852800 20403000 17896000 2506700 123210000 121630000 1584100 3971300 3874700 96621 416710000 413240000 3469300 0 0 0 + 30851 1848;735 32427 161268;161269;161270;161271;161272;161273;161274;161275;161276;161277;161278;161279;161280;161281;161282;161283;161284;161285;161286;161287;161288;161289;161290;161291;161292;161293;161294;161295;161296;161297;161298;161299;161300;161301;161302;161303;161304;161305;161306;161307;161308 162275;162276;162277;162278;162279;162280;162281;162282;162283;162284;162285;162286;162287;162288;162289;162290;162291;162292;162293;162294;162295;162296;162297;162298;162299;162300;162301;162302;162303;162304;162305;162306;162307;162308;162309;162310;162311;162312;162313;162314;162315;162316;162317;162318;162319;162320;162321;162322;162323;162324;162325;162326;162327 162275 53 SLNQSLAEWK ______________________________ KNEKKSLNQSLAEWKLFIYNPTTGEFLGRT K S L W K L 1 0 1 0 0 1 1 0 0 0 2 1 0 0 0 2 0 1 0 0 0 0 10 0 1174.5982 P54709;H7C547;F8WBY4 P54709 8 17 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 2 0.0011397 87.308 By MS/MS 1 1.1208 1.0355 NaN 1 Median 1.1208 1.0355 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17120000 7945000 9174700 17120000 7945000 9174700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30852 2485 32428 161309 162328 162328 1 SLNSDISYFGVGGK ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ RSLNSDISYFGVGGKQAVFFVGQSARMISK R S L G K Q 0 0 1 1 0 0 0 3 0 1 1 1 0 1 0 3 0 0 1 1 0 0 14 0 1442.7042 A6NHR9 A6NHR9 227 240 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.9819E-07 135.99 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 1.0298 1.0047 48.579 8 Median NaN NaN NaN 0 0 Median 1.2882 1.1296 NaN 1 0 Median 0.93307 1.026 NaN 1 0 Median 0.68095 0.61222 75.448 2 0 Median 0.87091 0.9143 60.013 3 1 Median 1.1366 0.98383 NaN 1 0 Median 44495000 23517000 20978000 0 0 0 1389700 565000 824700 33794000 17777000 16018000 2327100 1199500 1127600 6741100 3877900 2863300 243030 98030 145000 30853 518 32429 161310;161311;161312;161313;161314;161315;161316;161317 162329;162330;162331;162332;162333;162334 162330 6 SLNSIEFR LVFSRDFGLLVFVRKSLNSIEFRECREEIL LLVFVRKSLNSIEFRECREEILKFLCIFLE K S L F R E 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 0 0 0 0 8 0 964.49779 P78527 P78527 72 79 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.0245E-05 111.82 By MS/MS By MS/MS By matching 1 1 1 1.7069 1.4877 34.183 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94609 0.99061 NaN 1 1 Median 1.7069 1.4877 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3152 1.9539 NaN 1 0 Median 36840000 18392000 18448000 0 0 0 0 0 0 29795000 15710000 14085000 6847700 2611600 4236100 0 0 0 197910 70591 127320 30854 2647 32430 161318;161319;161320 162335;162336;162337 162335 3 SLNTDVLFGLLR LDHYSAIIMDEAHERSLNTDVLFGLLREVV HERSLNTDVLFGLLREVVARRSDLKLIVTS R S L L R E 0 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 12 0 1346.7558 Q92620 Q92620 658 669 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 2 0.00061626 67.563 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.1882 1.1352 17.985 4 Median 1.0262 1.0318 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99051 1.0792 NaN 1 0 Median 1.3757 1.1942 NaN 1 0 Median 1.4507 1.5423 NaN 1 0 Median NaN NaN NaN 0 0 Median 4172000 2128700 2043200 1195300 605580 589700 0 0 0 1771600 926850 844770 364160 288690 75469 840920 307630 533300 0 0 0 30855 3546 32431 161321;161322;161323;161324 162338;162339;162340 162338 3 SLNWEEMEK LLTPSMQKSVQNKIKSLNWEEMEKSRCIPE VQNKIKSLNWEEMEKSRCIPEIDDSEFCIR K S L E K S 0 0 1 0 0 0 3 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 9 0 1164.5121 V9GZ55;K7ENR6;Q969U7 V9GZ55 165 173 PSMG2 Proteasome assembly chaperone 2 yes no 2 0.0049104 59.245 By matching By MS/MS 2 1 1.1945 0.9941 7.1421 3 Plateau 1.0966 1.0543 8.3201 2 0 Median 1.1568 0.98292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6476600 3041900 3434700 4733100 2203500 2529700 1743500 838430 905040 0 0 0 0 0 0 0 0 0 0 0 0 30856 1388 32432 161325;161326;161327 162341;162342 162341 2 SLPAVQSDER EFRAKLSKALALTARSLPAVQSDERLQPLL ALTARSLPAVQSDERLQPLLNHLSHSYTGQ R S L E R L 1 1 0 1 0 1 1 0 0 0 1 0 0 0 1 2 0 0 0 1 0 0 10 0 1100.5462 P49643 P49643 236 245 PRIM2 DNA primase large subunit yes yes 2 0.0035251 56.432 By MS/MS By MS/MS 1 1 0.79141 0.74141 9.9312 2 Median 0.68382 0.69113 NaN 1 1 Median 0.91593 0.79535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3635700 1856200 1779500 2087900 1097200 990630 1547800 758930 788900 0 0 0 0 0 0 0 0 0 0 0 0 30857 2389 32433 161328;161329 162343;162344;162345 162345 3 SLPDFTELDLQGK SAQVQQYQQFLDASRSLPDFTELDLQGKVL SRSLPDFTELDLQGKVLPEGVGPGDIKAFQ R S L G K V 0 0 0 2 0 1 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1461.7351 P22670 P22670 582 594 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.00034725 76.143 By MS/MS By matching By matching 1 1 2 1.1435 0.97755 8.8066 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79316 0.86031 NaN 1 0 Median 1.0917 0.93029 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2061 1.0312 0.5428 2 0 Median 5399500 2745800 2653700 0 0 0 0 0 0 4621200 2382900 2238400 384710 183070 201640 0 0 0 393560 179840 213720 30858 2104 32434 161330;161331;161332;161333 162346 162346 1 SLPDTELMKDTAR WGQKCAPMSDLTDLKSLPDTELMKDTARGQ LKSLPDTELMKDTARGQNLLQTQDHAKAPK K S L A R G 1 1 0 2 0 0 1 0 0 0 2 1 1 0 1 1 2 0 0 0 0 0 13 1 1475.729 P46013 P46013 969 981 MKI67 Antigen KI-67 yes yes 3 0.00019102 69.716 By MS/MS 1 0.93653 1.0867 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93653 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16412000 8481700 7930500 0 0 0 0 0 0 16412000 8481700 7930500 0 0 0 0 0 0 0 0 0 30859 2335 32435 161334 162347;162348 162347 2 SLPEWLSDR SSLNEVKIYSLSCGKSLPEWLSDRKKRALQ SLSCGKSLPEWLSDRKKRALQKKDVDVRRR K S L D R K 0 1 0 1 0 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 0 0 9 0 1101.5455 Q9BSC4 Q9BSC4 19 27 NOL10 Nucleolar protein 10 yes yes 2 0.032216 48.283 By MS/MS 1 0.98977 1.0533 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98977 1.0533 NaN 1 1 Median NaN NaN NaN 0 0 Median 1860200 796460 1063700 0 0 0 0 0 0 0 0 0 0 0 0 1860200 796460 1063700 0 0 0 30860 3811 32436 161335 162349 162349 1 SLPEYLENMVIK RRSPHFFQPTNQQFKSLPEYLENMVIKLAK QFKSLPEYLENMVIKLAKELPPPSEEIKTG K S L I K L 0 0 1 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 1 1 0 0 12 0 1434.7429 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 517 528 THOC1 THO complex subunit 1 yes no 2 0.00071349 61.78 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.87173 0.83299 42.359 4 Median NaN NaN NaN 0 0 Median 0.91727 0.8118 NaN 1 1 Median 0.82846 0.85473 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62251 0.63995 NaN 1 0 Median 1.8263 1.7129 NaN 1 0 Median 10540000 5505900 5034000 0 0 0 1979800 907130 1072700 7459400 4021600 3437800 0 0 0 508450 261510 246940 592330 315670 276670 30861 62 32437 161336;161337;161338;161339 162350;162351;162352;162353 162352 4 SLPGQNEDLVLTGYQVDK VRAGDNKYMHLKVFKSLPGQNEDLVLTGYQ GQNEDLVLTGYQVDKNKDDELTGF______ K S L D K N 0 0 1 2 0 2 1 2 0 0 3 1 0 0 1 1 1 0 1 2 0 0 18 0 1974.9898 P01040 P01040 72 89 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 2.0114E-08 77.912 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.25368 0.23636 70.532 3 Median 0.21449 0.21327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25368 0.23636 NaN 1 1 Median 0.67393 0.75927 NaN 1 1 Median NaN NaN NaN 0 0 Median 15779000 12671000 3107900 5155400 4212500 942910 0 0 0 4751200 4751200 0 690580 532210 158370 5182200 3175500 2006600 0 0 0 30862 1830 32438 161340;161341;161342;161343 162354;162355;162356;162357 162355 4 SLPGVVTR LRTSLDLYANVIHCKSLPGVVTRHKDIDIL ANVIHCKSLPGVVTRHKDIDILIVRENTEG K S L T R H 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 827.4865 H7C1W2;E9PF84;G5E9Q7;E7EQB8;P51553 H7C1W2 90 97 IDH3G Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial yes no 2 0.008272 63.565 By MS/MS 1 1.4176 1.2226 NaN 1 Median NaN NaN NaN 0 0 Median 1.4176 1.2226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2816400 1160500 1655900 0 0 0 2816400 1160500 1655900 0 0 0 0 0 0 0 0 0 0 0 0 30863 877 32439 161344 162358 162358 1 SLPGYMTR LRRKLDLFANVVHVKSLPGYMTRHNNLDLV ANVVHVKSLPGYMTRHNNLDLVIIREQTEG K S L T R H 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1 1 1 0 1 0 0 0 8 0 923.45349 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 147 154 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0088315 61.999 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2035 1.1505 15.21 4 Median 1.0153 1.0066 NaN 1 0 Median 1.1582 1.0106 NaN 1 0 Median 1.2505 1.3098 NaN 1 0 Median 1.5187 1.3154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17871000 8710800 9160100 6194600 3059200 3135400 10166000 4908400 5257700 960620 473750 486870 549650 269400 280250 0 0 0 0 0 0 30864 96 32440 161345;161346;161347;161348 162359;162360;162361;162362 162362 4 SLPHITDVSWR AGKHRADKSTLSIGRSLPHITDVSWRLEYQ SIGRSLPHITDVSWRLEYQIKTNQLHRMYR R S L W R L 0 1 0 1 0 0 0 0 1 1 1 0 0 0 1 2 1 1 0 1 0 0 11 0 1309.6779 H0Y4W0;Q9UBI1;R4GNF2;H0Y4E5 H0Y4W0 89 99 COMMD3 COMM domain-containing protein 3 yes no 3 0.0013022 47.288 By MS/MS By matching By matching 1 1 1 0.97275 0.90861 3.1402 3 Median 0.94663 0.89325 NaN 1 0 Median 1.1073 0.94932 NaN 1 0 Median 0.97275 0.90861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5334600 3367800 1966800 4489100 2838400 1650700 118350 62787 55565 727180 466590 260600 0 0 0 0 0 0 0 0 0 30865 1149 32441 161349;161350;161351 162363 162363 1 SLPIYSPEKVEEYR YTYIGSVVISVNPYRSLPIYSPEKVEEYRN RSLPIYSPEKVEEYRNRNFYELSPHIFALS R S L Y R N 0 1 0 0 0 0 3 0 0 1 1 1 0 0 2 2 0 0 2 1 0 0 14 1 1708.8672 E9PDF6;O43795;C9JYW1;E7EQD9;C9JUP5;C9K0I9 E9PDF6 60 73 MYO1B Unconventional myosin-Ib yes no 3 0.00019523 65.805 By matching By MS/MS 1 1 0.72386 0.78425 1.3379 2 Median 0.7639 0.7917 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68591 0.77686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6153800 3236600 2917200 1903800 1127400 776320 0 0 0 4250000 2109200 2140900 0 0 0 0 0 0 0 0 0 30866 914 32442 161352;161353 162364 162364 1 SLPQSDPVLK ETEAPGGYKFYLQNRSLPQSDPVLKVTLAV YLQNRSLPQSDPVLKVTLAVSDLQKSLNYW R S L L K V 0 0 0 1 0 1 0 0 0 0 2 1 0 0 2 2 0 0 0 1 0 0 10 0 1082.5972 Q9HC38;F6TLX2;I3L3Q4 Q9HC38 146 155 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.0017935 62.546 By MS/MS By MS/MS By matching 2 1 1 0.70091 0.61928 73.129 4 Median 0.41935 0.40887 62.178 2 0 Median 0.71928 0.60429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2988 1.5773 NaN 1 0 Median NaN NaN NaN 0 0 Median 20167000 11998000 8169500 11659000 7605900 4052600 6861600 3833800 3027800 0 0 0 0 0 0 1647300 558260 1089100 0 0 0 30867 4025 32443 161354;161355;161356;161357 162365;162366;162367;162368;162369 162366 5 SLPSLVPLR CEAEDSALTKLPCYKSLPSLVPLRIAALNA KLPCYKSLPSLVPLRIAALNALAACNYLPQ K S L L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 0 0 9 0 980.60187 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1357 1365 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00059517 111.01 By MS/MS By matching 2 1 0.72403 0.73115 5.8315 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70806 0.76868 7.0796 2 0 Median 0.84146 0.72987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10857000 6284100 4573100 0 0 0 0 0 0 10528000 6101400 4426900 328990 182730 146260 0 0 0 0 0 0 30868 991 32444 161358;161359;161360 162370;162371;162372 162371 3 SLPSQQMVNR GLPPRIGSLASGNVRSLPSQQMVNRLSIPK SGNVRSLPSQQMVNRLSIPKPNLNSTGVNM R S L N R L 0 1 1 0 0 2 0 0 0 0 1 0 1 0 1 2 0 0 0 1 0 0 10 0 1158.5815 Q9H2P0;A0A2R8Y6X0 Q9H2P0 297 306 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.00015579 119.29 By MS/MS By MS/MS By MS/MS 1 1 1 0.7733 0.81044 3.7858 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73168 0.80295 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.7733 0.81096 NaN 1 1 Median 0.92913 0.75616 NaN 1 1 Median 8442500 4944700 3497800 0 0 0 0 0 0 2825700 1293100 1532600 0 0 0 4548800 3063400 1485400 1068000 588220 479800 30869 3946 32445 161361;161362;161363 162373;162374;162375 162374 3 SLPTTVPESPNYR ANKLFGAPEPSTIARSLPTTVPESPNYRNT ARSLPTTVPESPNYRNTRTPRTPRTPQLKD R S L Y R N 0 1 1 0 0 0 1 0 0 0 1 0 0 0 3 2 2 0 1 1 0 0 13 0 1459.7307 Q6PKG0;A0A0B4J210;E5RH50;H0YC33 Q6PKG0 766 778 LARP1 La-related protein 1 yes no 2 0.00049168 72.2 By MS/MS By MS/MS By matching 1 1 1 1.2802 1.2258 61.233 2 Median 0.82601 0.79501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9841 1.89 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21962000 11669000 10293000 19751000 10790000 8961000 0 0 0 0 0 0 2211000 879490 1331500 0 0 0 0 0 0 30870 3176 32446 161364;161365;161366 162376;162377;162378 162376 3 SLPVEEQPK LAKWKTAEEVAALIRSLPVEEQPKQIIVTR VAALIRSLPVEEQPKQIIVTRKGMLDPLEV R S L P K Q 0 0 0 0 0 1 2 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 9 0 1025.5393 Q6P2Q9 Q6P2Q9 1851 1859 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0091518 62.546 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 0.95022 0.82125 19.356 6 Median 1.1503 1.0828 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66173 0.73109 NaN 1 0 Median 0.93228 0.84295 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96851 0.80011 19.054 3 0 Median 20360000 11116000 9244600 1785300 766510 1018800 0 0 0 10215000 6173400 4041400 2642300 1217400 1424900 0 0 0 5717800 2958400 2759400 30871 3157 32447 161367;161368;161369;161370;161371;161372;161373 162379;162380;162381;162382;162383;162384 162380 6 SLPVPQLVPETEDEK ASAFFTYVSLSQEGRSLPVPQLVPETEDEK SLPVPQLVPETEDEKKRFEEGKGRYLQMKA R S L E K K 0 0 0 1 0 1 3 0 0 0 2 1 0 0 3 1 1 0 0 2 0 0 15 0 1679.8618 O00154 O00154 341 355 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes yes 2 0.014138 43.897 By MS/MS 1 0.94912 0.95196 NaN 1 Median 0.94912 0.95196 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16833000 8459000 8373900 16833000 8459000 8373900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30872 1443 32448 161374 162385 162385 1 SLQADTTNTDTALTTLEEALAEKER RDKEKQMSSLKERVKSLQADTTNTDTALTT TALTTLEEALAEKERTIERLKEQRDRDERE K S L E R T 4 1 1 2 0 1 4 0 0 0 4 1 0 0 0 1 6 0 0 0 0 0 25 1 2720.3352 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 603 627 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 0.0027026 25.021 By matching By MS/MS 1 1 0.89565 0.9352 9.1113 2 Median NaN NaN NaN 0 0 Median 0.91576 0.87685 NaN 1 0 Median 0.87597 0.99744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2994400 1438300 1556100 0 0 0 835290 369340 465950 2159100 1068900 1090200 0 0 0 0 0 0 0 0 0 30873 3311 32449 161375;161376 162386;162387 162387 2 SLQALGEVIEAELR AELGMEHQAVVGAVKSLQALGEVIEAELRS KSLQALGEVIEAELRSTKHWELTAEGEEIA K S L L R S 2 1 0 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 14 0 1526.8304 Q9Y285;K7ER00;K7ER16;K7EK06 Q9Y285 43 56 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 1.0193E-48 170.4 By MS/MS By MS/MS By MS/MS 1 3 1 1.1544 1.0943 5.7975 4 Median 1.1112 1.1026 NaN 1 1 Median 1.2259 1.0454 5.3996 2 1 Median 1.1 1.1572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33212000 16349000 16863000 3103300 1550500 1552800 28042000 13818000 14223000 2067500 980440 1087100 0 0 0 0 0 0 0 0 0 30874 4379 32450 161377;161378;161379;161380;161381 162388;162389;162390;162391;162392 162392 5 SLQAQLQR CLDRTNVIQSLLARRSLQAQLQRLGVLHVG QSLLARRSLQAQLQRLGVLHVGQKLEEQDE R S L Q R L 1 1 0 0 0 3 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 942.52468 Q9NTJ5;E9PGZ4;C9JV50 Q9NTJ5 407 414 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.020409 66.682 By MS/MS 1 1.5266 1.3216 NaN 1 Median NaN NaN NaN 0 0 Median 1.5266 1.3216 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5056100 1885700 3170400 0 0 0 5056100 1885700 3170400 0 0 0 0 0 0 0 0 0 0 0 0 30875 4109 32451 161382 162393 162393 1 SLQATALR IIHTAAARANKELLKSLQATALRIYDPQEG ANKELLKSLQATALRIYDPQEGAVVVLPAD K S L L R I 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 8 0 858.49232 Q9NXF1 Q9NXF1 591 598 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.033457 67.032 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30876 4163 32452 161383 162394 162394 1 SLQAVPGAK PESAPALPTEEQVQRSLQAVPGAKDGTSLW EEQVQRSLQAVPGAKDGTSLWDLLSSCHFT R S L A K D 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 9 0 869.49707 P58107;A0A075B730 P58107 1131 1139 EPPK1 Epiplakin yes no 2 0.0061228 55.531 By MS/MS 2 1.3584 1.1827 24.648 2 Median NaN NaN NaN 0 0 Median 1.3584 1.1827 24.648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2725200 1238000 1487200 0 0 0 2725200 1238000 1487200 0 0 0 0 0 0 0 0 0 0 0 0 30877 2520 32453 161384;161385 162395 162395 1 SLQDTAELLSLENHPAK SELTMELEEKQDVFRSLQDTAELLSLENHP QDTAELLSLENHPAKQTVEAYSAAVQSQLQ R S L A K Q 2 0 1 1 0 1 2 0 1 0 4 1 0 0 1 2 1 0 0 0 0 0 17 0 1864.9531 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 733 749 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.00016623 39.91 By MS/MS By MS/MS 1 1 1.0936 1.0589 42.702 2 Median NaN NaN NaN 0 0 Median 1.6322 1.4322 NaN 1 1 Median 0.73271 0.78294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21098000 11613000 9485500 0 0 0 7503100 3215900 4287200 13595000 8397100 5198300 0 0 0 0 0 0 0 0 0 30878 1220 32454 161386;161387 162396;162397 162396 2 SLQEEHVAVAQLR SKRASFAEKTAQLERSLQEEHVAVAQLREE ERSLQEEHVAVAQLREEAERRAQQQAEAER R S L L R E 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 13 0 1478.7841 Q15149 Q15149 1732 1744 PLEC Plectin yes yes 2;3 6.1014E-23 164.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 3 2 1.7969 1.3032 30.948 17 Plateau 1.7177 1.6666 20.177 3 2 Plateau 1.6236 1.3335 26.483 4 0 Median 2.6517 2.7793 50.296 3 2 Plateau 1.6561 1.4431 58.394 2 0 Median 1.3029 1.3481 21.428 3 2 Plateau 1.5176 1.2575 22.017 2 0 Median 313520000 124450000 189070000 63452000 26383000 37068000 174550000 68921000 105630000 33759000 12568000 21191000 12455000 4354800 8100200 16977000 7058600 9918300 12327000 5160100 7167200 30879 2933 32455 161388;161389;161390;161391;161392;161393;161394;161395;161396;161397;161398;161399;161400;161401;161402;161403;161404 162398;162399;162400;162401;162402;162403;162404;162405;162406;162407;162408;162409;162410;162411;162412;162413;162414;162415;162416;162417;162418;162419;162420;162421;162422;162423 162400 26 SLQEEHVAVAQLREEAER SKRASFAEKTAQLERSLQEEHVAVAQLREE EEHVAVAQLREEAERRAQQQAEAERAREEA R S L E R R 3 2 0 0 0 2 5 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 18 1 2093.0501 Q15149 Q15149 1732 1749 PLEC Plectin yes yes 3;4 7.1094E-13 134.21 By MS/MS By matching By matching 2 1 2 1.2295 1.3512 21.134 5 Median 1.1282 1.226 3.4876 2 0 Median 2.1099 1.9775 NaN 1 0 Median 1.3678 1.5032 15.073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85178000 37441000 47737000 58669000 25846000 32822000 4603400 1603600 2999800 21906000 9991500 11915000 0 0 0 0 0 0 0 0 0 30880 2933 32456 161405;161406;161407;161408;161409 162424;162425;162426 162424 3 SLQEEHVAVAQLREEAERR SKRASFAEKTAQLERSLQEEHVAVAQLREE EHVAVAQLREEAERRAQQQAEAERAREEAE R S L R R A 3 3 0 0 0 2 5 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 19 2 2249.1513 Q15149 Q15149 1732 1750 PLEC Plectin yes yes 4 4.1109E-05 41.86 By MS/MS By matching 1 1 0.96179 1.0676 9.255 2 Median 1.0306 1.1398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89759 1 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23187000 10938000 12249000 19349000 9221700 10127000 0 0 0 3838200 1716100 2122100 0 0 0 0 0 0 0 0 0 30881 2933 32457 161410;161411 162427;162428 162428 2 SLQEELSLAR QAALISRKEALKENKSLQEELSLARGTIER LKENKSLQEELSLARGTIERLTKSLADVES K S L A R G 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 1144.6088 Q14789;E7EU81 Q14789 1501 1510 GOLGB1 Golgin subfamily B member 1 yes no 2 3.5054E-05 141.48 By MS/MS By MS/MS By matching 1 1 1 1.0798 0.95365 2.0739 2 Median 0.99659 0.96774 NaN 1 0 Median 1.17 0.93977 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41655000 19768000 21888000 26506000 13594000 12912000 14897000 6111400 8786000 0 0 0 252160 62707 189450 0 0 0 0 0 0 30882 2900 32458 161412;161413;161414 162429;162430;162431 162430 3 SLQEEPVEGFR QQMTSSQKALMLELKSLQEEPVEGFRITLV LELKSLQEEPVEGFRITLVDESDLYNWEVA K S L F R I 0 1 0 0 0 1 3 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1289.6252 Q712K3 Q712K3 19 29 UBE2R2 Ubiquitin-conjugating enzyme E2 R2 yes yes 2 0.00070215 84.213 By MS/MS By MS/MS 1 1 0.97928 0.87478 9.1049 2 Median 0.8712 0.82024 NaN 1 0 Median 1.1008 0.93295 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8375300 4633700 3741600 5717900 3272800 2445100 2657400 1361000 1296400 0 0 0 0 0 0 0 0 0 0 0 0 30883 3210 32459 161415;161416 162432;162433;162434 162432 3 SLQEEQSRPPTAVSSPGGPAR EPDIPPPQPDCGDFRSLQEEQSRPPTAVSS SRPPTAVSSPGGPARAPPYQEPPWGGPATA R S L A R A 2 2 0 0 0 2 2 2 0 0 1 0 0 0 4 4 1 0 0 1 0 0 21 1 2150.0716 Q9BWU0;A0A087X0M4 Q9BWU0 130 150 SLC4A1AP Kanadaptin yes no 3 0.00031925 30.428 By MS/MS By matching By matching 1 1 1 0.57742 0.55668 30.962 3 Median 0.37544 0.41712 NaN 1 0 Median 0.57742 0.55668 NaN 1 0 Median 0.67025 0.77446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9515700 5796000 3719800 3400500 2541600 858900 3987700 2216800 1771000 2127500 1037600 1089900 0 0 0 0 0 0 0 0 0 30884 106 32460 161417;161418;161419 162435 162435 1 SLQELFLAHILSPWGAEVK VVSEDFLQDVSASTKSLQELFLAHILSPWG LFLAHILSPWGAEVKAEPVEVVAPRGKSGA K S L V K A 2 0 0 0 0 1 2 1 1 1 4 1 0 1 1 2 0 1 0 1 0 0 19 0 2137.1572 P09874 P09874 468 486 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.0368E-05 48.477 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 7 2 1 0.91095 0.94555 11.634 15 Median 0.85622 0.8463 3.5129 3 0 Median 1.0629 0.96211 0.81055 2 0 Median 0.87743 0.94555 15.108 7 0 Median NaN NaN NaN 0 0 Median 0.92993 0.95763 2.4413 2 0 Median 1.1255 0.96198 NaN 1 0 Median 45559000 23629000 21930000 4601200 2440300 2160900 608440 281330 327110 34072000 17743000 16329000 0 0 0 6092400 3095000 2997400 184840 69499 115340 30885 1922 32461 161420;161421;161422;161423;161424;161425;161426;161427;161428;161429;161430;161431;161432;161433;161434 162436;162437;162438;162439;162440;162441;162442;162443;162444;162445 162436 10 SLQEQADAAEER MAGSSSLEAVRRKIRSLQEQADAAEERAGT KIRSLQEQADAAEERAGTLQRELDHERKLR R S L E R A 3 1 0 1 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 0 1345.611 H7BYY1;F5H7S3;B7Z596;H0YKJ4;H0YK48;A0A494BZZ2;H0YN06 H7BYY1 16 27 TPM1 yes no 2 0.00060982 68.893 By MS/MS By MS/MS By matching 1 2 1 0.8289 0.8046 32.743 3 Median 0.8289 0.8046 NaN 1 0 Median 1.5088 1.2852 NaN 1 1 Median 0.67849 0.68409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4904500 2273100 2631400 1629900 808330 821530 1023000 354790 668180 2251600 1110000 1141700 0 0 0 0 0 0 0 0 0 30886 1249 32462 161435;161436;161437;161438 162446;162447;162448 162446 3 SLQETIQSLK HLLSSWEQIPKKVQKSLQETIQSLKLTNQE KKVQKSLQETIQSLKLTNQELLRKGSSNNQ K S L L K L 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1145.6292 Q6NUQ4;H7C008;H7C085 Q6NUQ4 435 444 TMEM214 Transmembrane protein 214 yes no 2 0.00041689 122.13 By MS/MS By MS/MS 1 1 1.2266 1.1363 13.673 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0331 1.0316 NaN 1 0 Median 1.4564 1.2516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23965000 12009000 11955000 0 0 0 0 0 0 23010000 11635000 11376000 954340 374630 579710 0 0 0 0 0 0 30887 3145 32463 161439;161440 162449;162450 162449 2 SLQLDIIPASIPGSEVK EKALGISSDSNKSSKSLQLDIIPASIPGSE QLDIIPASIPGSEVKLRDAAHELNEEKRKS K S L V K L 1 0 0 1 0 1 1 1 0 3 2 1 0 0 2 3 0 0 0 1 0 0 17 0 1765.9826 E7EWP2;O75962;F5H228;E7EPJ7 E7EWP2 1199 1215 TRIO Triple functional domain protein yes no 2 2.1734E-05 66.262 By MS/MS 1 0.64392 0.63793 NaN 1 Median 0.64392 0.63793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2620000 1534500 1085500 2620000 1534500 1085500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30888 903 32464 161441 162451;162452 162451 2 SLQMYLER VQNFVSFISKDSIQKSLQMYLERLKEEKG_ SKDSIQKSLQMYLERLKEEKG_________ K S L E R L 0 1 0 0 0 1 1 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 8 0 1038.5168 P42126;Q96DC0 P42126 289 296 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 0.0023123 138.9 By MS/MS By MS/MS By MS/MS 2 1 1 0.83683 0.80045 16.78 4 Median 0.81871 0.77836 7.8337 2 0 Median 1.2714 1.0755 NaN 1 0 Median 0.81045 0.77881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143860000 74194000 69670000 117230000 61824000 55411000 17902000 7806000 10096000 8727200 4563700 4163400 0 0 0 0 0 0 0 0 0 30889 2305 32465;32466 161442;161443;161444;161445 162453;162454;162455;162456;162457;162458 162455 1050 6 SLQPSVLMQLK RWRVDVAISTSALARSLQPSVLMQLKLSDG ALARSLQPSVLMQLKLSDGSAYRFEVPTAK R S L L K L 0 0 0 0 0 2 0 0 0 0 3 1 1 0 1 2 0 0 0 1 0 0 11 0 1242.7006 Q9GZQ3;H0YEQ6 Q9GZQ3 171 181 COMMD5 COMM domain-containing protein 5 yes no 2 0.0091599 39.148 By MS/MS By matching By matching By matching 1 1 1 1 1.1115 0.95776 13.788 4 Median 0.92715 0.8655 NaN 1 0 Median 1.102 0.95211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.153 1.1991 NaN 1 0 Median 1.1212 0.96345 NaN 1 0 Median 4781600 2443200 2338500 4099500 2114500 1985100 216130 108240 107890 0 0 0 0 0 0 414100 193530 220570 51855 26908 24947 30890 3911 32467 161446;161447;161448;161449 162459;162460 162459 2 SLQQLAEER VATFNSIKELNERWRSLQQLAEERSQLLGS LNERWRSLQQLAEERSQLLGSAHEVQRFHR R S L E R S 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 A0A0D9SF54;Q13813 Q13813 1217 1225 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 5.9621E-08 157.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 1 2 1.0173 0.94791 33.977 13 Median 1.2205 1.1454 31.849 3 1 Median 1.3476 1.1127 22.664 2 0 Median 0.72376 0.79248 30.5 2 1 Median 1.0679 0.94406 34.031 3 0 Median 0.99487 1.0114 NaN 1 0 Median 0.73456 0.60201 47.04 2 0 Median 338820000 164470000 174350000 29065000 11095000 17969000 76013000 32069000 43944000 155210000 81789000 73416000 30913000 14500000 16413000 31282000 16558000 14723000 16341000 8453800 7886900 30891 264;2838 32468 161450;161451;161452;161453;161454;161455;161456;161457;161458;161459;161460;161461;161462 162461;162462;162463;162464;162465;162466;162467;162468;162469;162470;162471;162472;162473;162474;162475;162476;162477 162465 16 SLQQVDEHSKPPHLR SKSAKRWKSGWEENKSLQQVDEHSKPPHLR SLQQVDEHSKPPHLRHRESWSSTKGILSPR K S L L R H 0 1 0 1 0 2 1 0 2 0 2 1 0 0 2 2 0 0 0 1 0 0 15 1 1769.9173 O94913;E9PKN0;E9PQ01 O94913 606 620 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 4 0.020223 30.961 By MS/MS 1 4.8669 5.8332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.8669 5.8332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14217000 2484700 11732000 0 0 0 0 0 0 14217000 2484700 11732000 0 0 0 0 0 0 0 0 0 30892 1736 32469 161463 162478 162478 1 SLQSLEASLHAMESTR EKRQQSEKTFMPKQRSLQSLEASLHAMEST LQSLEASLHAMESTRESLKAELGTDLLSQL R S L T R E 2 1 0 0 0 1 2 0 1 0 3 0 1 0 0 4 1 0 0 0 0 0 16 0 1758.857 Q9UQE7 Q9UQE7 759 774 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 1.8811E-05 76.85 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 2 1 0.96949 0.97494 20.394 9 Median 0.98128 0.97494 NaN 1 0 Median 1.7045 1.497 NaN 1 0 Median 0.87366 0.96069 15.772 3 0 Median 1.2869 1.1346 NaN 1 0 Median 0.96703 0.98916 13.854 2 0 Median 0.93565 0.80301 NaN 1 0 Median 24647000 12484000 12163000 1762100 927830 834230 1041200 515090 526090 11827000 6154000 5673200 203000 89112 113880 8997400 4460700 4536600 816350 336870 479480 30893 4362 32470 161464;161465;161466;161467;161468;161469;161470;161471;161472 162479;162480;162481;162482;162483;162484 162482 6 SLQSLLGPSSK SLSSTSGIGTSPSLRSLQSLLGPSSKFRHA PSLRSLQSLLGPSSKFRHAQGTVLHRDSHI R S L S K F 0 0 0 0 0 1 0 1 0 0 3 1 0 0 1 4 0 0 0 0 0 0 11 0 1115.6186 A0A0A6YYL4;P57737;E7EP81;I3L167 A0A0A6YYL4 462 472 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 0.0051953 67.334 By MS/MS 1 0.89445 0.86774 NaN 1 Median 0.89445 0.86774 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8026200 4385900 3640300 8026200 4385900 3640300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30894 209 32471 161473 162485 162485 1 SLQSVAEER GKPVHHGVNQLKFARSLQSVAEERAGRHCG QLKFARSLQSVAEERAGRHCGALRVLNSYW R S L E R A 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1017.5091 P61313;A0A2R8YEM3;E7EQV9;E7EX53;A0A2R8Y738 P61313 97 105 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 0.00043177 128.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 2 4 2 1.1477 1.1118 15.128 17 Median 1.1394 1.1134 7.2386 4 0 Median 1.1156 0.9286 5.8669 4 0 Median 1.1506 1.1051 NaN 1 0 Median 1.1369 0.96676 8.8767 2 1 Median 1.1539 1.1931 12.439 4 0 Median 1.5665 1.2771 13.159 2 0 Median 226240000 103970000 122270000 74752000 35979000 38772000 40082000 18730000 21352000 22870000 10254000 12615000 8024700 3526800 4497800 49404000 22672000 26732000 31105000 12807000 18298000 30895 2555 32472 161474;161475;161476;161477;161478;161479;161480;161481;161482;161483;161484;161485;161486;161487;161488;161489;161490 162486;162487;162488;162489;162490;162491;162492;162493;162494;162495;162496;162497;162498;162499;162500;162501;162502;162503;162504;162505;162506;162507 162490 22 SLQTVSGR GEEFVLFMKILSGLKSLQTVSGRQQLVELV KILSGLKSLQTVSGRQQLVELVAEQADLEQ K S L G R Q 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 8 0 846.45593 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 203 210 API5 Apoptosis inhibitor 5 yes no 2 0.0067369 69.998 By MS/MS By MS/MS By MS/MS 1 1 2 1.3055 1.2122 9.3941 4 Median NaN NaN NaN 0 0 Median 1.3341 1.1534 NaN 1 1 Median 1.2119 1.274 NaN 1 0 Median 1.4289 1.2395 14.504 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4612200 1957900 2654300 0 0 0 1866400 752880 1113500 2224800 981200 1243600 520970 223860 297120 0 0 0 0 0 0 30896 1103 32473 161491;161492;161493;161494 162508;162509;162510;162511 162509 4 SLQYEYK ______________________________ ______________________________ R S L Y K A 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 0 7 0 929.44945 O75643;A0A494C1A5 O75643 8 14 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.1695 1.0181 20.685 5 Median NaN NaN NaN 0 0 Median 1.3687 1.2159 NaN 1 1 Median 0.90793 1.0108 NaN 1 0 Median 1.1186 1.0181 NaN 1 0 Median 1.5327 1.6228 NaN 1 0 Median 1.1695 1.0056 NaN 1 0 Median 12287000 5442100 6845300 0 0 0 2840800 1223500 1617300 6002800 2847000 3155800 942910 370310 572600 1821100 708830 1112300 679810 292440 387380 30897 1688 32474 161495;161496;161497;161498;161499;161500 162512;162513;162514;162515 162512 4 SLRPDPNFDALISK NKECPTCRKKLVSKRSLRPDPNFDALISKI RSLRPDPNFDALISKIYPSRDEYEAHQERV R S L S K I 1 1 1 2 0 0 0 0 0 1 2 1 0 1 2 2 0 0 0 0 0 0 14 1 1571.8308 Q06587;Q99496;X6RFN3 Q99496 99 112 RING1;RNF2 E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2 no no 2;3 0.00030775 76.655 By MS/MS By MS/MS By MS/MS 8 3 3 0.67378 0.64342 17.931 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62751 0.66882 20.379 8 1 Median 0.73315 0.64615 16.526 3 0 Median 0.53462 0.55942 13.994 3 0 Median NaN NaN NaN 0 0 Median 93172000 55251000 37921000 0 0 0 0 0 0 84126000 49757000 34369000 1972300 1139900 832400 7073400 4354200 2719200 0 0 0 30898 3748;2727 32475 161501;161502;161503;161504;161505;161506;161507;161508;161509;161510;161511;161512;161513;161514 162516;162517;162518;162519;162520;162521;162522;162523;162524;162525 162520 10 SLRVDIAEGR LKEALTYDGALLGDRSLRVDIAEGRKQDKG LLGDRSLRVDIAEGRKQDKGGFGFRKGGPD R S L G R K 1 2 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1114.6095 Q15056 Q15056 110 119 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.00010582 145.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2243 1.2563 30.062 6 Median 1.2435 1.3162 2.3575 2 0 Median 1.6319 1.4384 63.322 2 0 Median 1.176 1.2193 NaN 1 0 Median 1.2378 1.1084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53054000 23538000 29516000 14465000 6224200 8240600 20274000 9509400 10765000 9192600 3940100 5252500 9122800 3864300 5258500 0 0 0 0 0 0 30899 2922 32476 161515;161516;161517;161518;161519;161520 162526;162527;162528;162529;162530;162531;162532;162533;162534;162535 162527 10 SLSAIYLEK RSELELTLGKLEQVRSLSAIYLEKLKTISL KLEQVRSLSAIYLEKLKTISLVIRGTQGAE R S L E K L 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 9 0 1022.5648 Q15149;H0YDN1 Q15149 1216 1224 PLEC Plectin yes no 2 0.0018623 76.827 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.3579 1.2165 13.434 7 Median 1.6552 1.662 NaN 1 1 Median 1.3234 1.1648 5.2757 2 0 Median 1.1456 1.2237 NaN 1 0 Median 1.2572 1.2066 NaN 1 1 Median 1.3613 1.425 NaN 1 1 Median 1.42 1.2165 NaN 1 0 Median 92658000 32746000 59912000 45540000 12840000 32701000 19921000 8418900 11502000 15088000 6351800 8735900 1856400 833070 1023400 6622700 2734600 3888100 3629400 1568000 2061300 30900 2933 32477 161521;161522;161523;161524;161525;161526;161527;161528 162536;162537;162538;162539;162540;162541;162542;162543;162544;162545 162541 10 SLSALGNVISALAEGSTYVPYR GAEGAVLDEAKNINKSLSALGNVISALAEG VISALAEGSTYVPYRDSKMTRILQDSLGGN K S L Y R D 3 1 1 0 0 0 1 2 0 1 3 0 0 0 1 4 1 0 2 2 0 0 22 0 2267.1798 P33176 P33176 257 278 KIF5B Kinesin-1 heavy chain yes yes 2;3 0.00013026 37.156 By MS/MS By MS/MS By matching 2 2 2 1.0901 0.96 33.938 6 Median 0.87935 0.88705 1.4051 2 0 Median 1.0901 0.96 5.9014 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6901 1.7599 10.147 2 0 Median NaN NaN NaN 0 0 Median 3576100 1696100 1880000 2125100 1045500 1079600 1116500 537570 578960 0 0 0 0 0 0 334500 113050 221440 0 0 0 30901 2221 32478 161529;161530;161531;161532;161533;161534 162546;162547;162548;162549;162550;162551 162551 6 SLSAQEEKITALDEFATK DSVEALLKKHEDFEKSLSAQEEKITALDEF AQEEKITALDEFATKLIQNNHYAMEDVATR K S L T K L 3 0 0 1 0 1 3 0 0 1 2 2 0 1 0 2 2 0 0 0 0 0 18 1 1980.0052 A0A0D9SF54;Q13813 Q13813 515 532 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 2.8577E-06 62.203 By MS/MS 1 1.193 1.3777 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.193 1.3777 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5629800 2545000 3084900 0 0 0 0 0 0 5629800 2545000 3084900 0 0 0 0 0 0 0 0 0 30902 264;2838 32479 161535 162552 162552 1 SLSDSESDDSK NSQKAGKEKDGTKRKSLSDSESDDSKSKKK TKRKSLSDSESDDSKSKKKRDAADKPRGFA K S L S K S 0 0 0 3 0 0 1 0 0 0 1 1 0 0 0 5 0 0 0 0 0 0 11 0 1168.4732 Q13185;S4R2Y4 Q13185 93 103 CBX3 Chromobox protein homolog 3 yes no 2 0.013692 37.344 By matching By matching By MS/MS 1 1 2 1.1151 0.91707 3.511 4 Median NaN NaN NaN 0 0 Median 1.1367 0.97965 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1277 0.92033 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0991 0.91088 0.45579 2 0 Median 1183100 543110 639970 0 0 0 261440 132110 129330 0 0 0 255170 112690 142470 0 0 0 666470 298300 368170 30903 2795 32480 161536;161537;161538;161539 162553;162554;162555 162555 3 SLSDTVEK KSPSAQLMEQVAQLKSLSDTVEKLKDEVLK EQVAQLKSLSDTVEKLKDEVLKETVSQRPG K S L E K L 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 8 0 877.43928 E7EX90;Q14203;E7EWF7 E7EX90 1172 1179 DCTN1 Dynactin subunit 1 yes no 2 0.0035928 86.794 By MS/MS 1 1.2652 1.0716 NaN 1 Median NaN NaN NaN 0 0 Median 1.2652 1.0716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9660900 3977700 5683200 0 0 0 9660900 3977700 5683200 0 0 0 0 0 0 0 0 0 0 0 0 30904 906 32481 161540 162556 162556 1 SLSDWHLAVK ______________________________ ______________________________ M S L V K L 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 2 0 1 0 1 0 0 10 0 1154.6084 H3BV23;Q96S82;H3BUV9 H3BV23 2 11 UBL7 Ubiquitin-like protein 7 yes no 2 0.0065905 49.097 By MS/MS By matching 1 2 1.1396 1.0639 51.336 3 Plateau 1.1396 1.0639 NaN 1 0 Median 0.78284 0.67642 62.478 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4433600 2120300 2313300 4074600 1940700 2133900 359000 179620 179380 0 0 0 0 0 0 0 0 0 0 0 0 30905 1239 32482 161541;161542;161543 162557 162557 1 SLSEAMSVEK LEGHKEGIVQTEQIRSLSEAMSVEKIAAIK TEQIRSLSEAMSVEKIAAIKAKIMAKKRST R S L E K I 1 0 0 0 0 0 2 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 10 0 1079.5169 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3 Q6P1J9 172 181 CDC73 Parafibromin yes no 2 0.0040958 54.416 By MS/MS 1 0.84641 0.8596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84641 0.8596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3809600 2145500 1664100 0 0 0 0 0 0 3809600 2145500 1664100 0 0 0 0 0 0 0 0 0 30906 3150 32483 161544 162558;162559 162559 2 SLSEEIKR SGYRAQIDNLTRENRSLSEEIKRLKNTLTQ NLTRENRSLSEEIKRLKNTLTQTTENLRRV R S L K R L 0 1 0 0 0 0 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 8 1 960.52401 P15924 P15924 1404 1411 DSP Desmoplakin yes yes 2 0.010581 67.032 By matching By matching By MS/MS By MS/MS 2 1 2 2 1.049 1.0979 34.667 6 Median NaN NaN NaN 0 0 Median 1.0118 0.97594 21.016 2 0 Median 0.49095 0.56559 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9415 1.0645 NaN 1 1 Median 1.5415 1.3613 19.288 2 0 Median 11719000 5509000 6210300 0 0 0 2478000 1139600 1338400 460530 322200 138330 0 0 0 4316600 2177300 2139200 4464200 1869900 2594400 30907 2021 32484 161545;161546;161547;161548;161549;161550;161551 162560;162561;162562;162563 162562 4 SLSEINKPNFYNNDFDDDFSHR SEDSDTRQTSHLQARSLSEINKPNFYNNDF PNFYNNDFDDDFSHRSSENILTVHEQANVE R S L H R S 0 1 4 4 0 0 1 0 1 1 1 1 0 3 1 3 0 0 1 0 0 0 22 1 2673.1732 Q5QJE6;J3KP30 Q5QJE6 251 272 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 4 0.00022336 28.418 By MS/MS 1 0.93265 1.0295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93265 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median 3180300 1726700 1453600 0 0 0 0 0 0 0 0 0 0 0 0 3180300 1726700 1453600 0 0 0 30908 3067 32485 161552 162564 162564 1 SLSELLGPYGMK LTFNAEEYSDISEMRSLSELLGPYGMKFLS EMRSLSELLGPYGMKFLSESLMWHISSQVA R S L M K F 0 0 0 0 0 0 1 2 0 0 3 1 1 0 1 2 0 0 1 0 0 0 12 0 1293.6639 Q9Y2A7 Q9Y2A7 838 849 NCKAP1 Nck-associated protein 1 yes yes 2 0.00060469 69.954 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.97392 0.91795 4.0107 4 Median 0.879 0.86006 NaN 1 0 Median 1.0791 0.93553 NaN 1 0 Median 0.84176 0.9007 NaN 1 0 Median 1.1124 0.93608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10628000 4858300 5769200 4483900 2340300 2143600 3263000 1075400 2187600 2209000 1132700 1076300 671560 309860 361700 0 0 0 0 0 0 30909 4383 32486 161553;161554;161555;161556 162565;162566;162567;162568 162568 4 SLSEQPVMDTATATEQAK KQSSSSTTSQGGVKRSLSEQPVMDTATATE EQPVMDTATATEQAKQLVKSGAISAIKAET R S L A K Q 3 0 0 1 0 2 2 0 0 0 1 1 1 0 1 2 3 0 0 1 0 0 18 0 1905.899 P18615;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9;A2ABK4 P18615 49 66 NELFE Negative elongation factor E yes no 2 3.0874E-32 147.18 By MS/MS By matching By MS/MS 1 1 3 1.0611 0.89979 4.8387 5 Median 1.0611 0.9911 NaN 1 0 Median 1.0783 0.95315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99527 0.89303 0.68518 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22175000 10467000 11708000 8360000 3957800 4402100 667600 292900 374700 0 0 0 13148000 6216000 6931600 0 0 0 0 0 0 30910 2059 32487 161557;161558;161559;161560;161561 162569;162570;162571;162572 162572 4 SLSEYNNFK ILNDARDKTGSSAQKSLSEYNNFKSMVVSG GSSAQKSLSEYNNFKSMVVSGAKGSKINIS K S L F K S 0 0 2 0 0 0 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 9 0 1100.5138 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 759 767 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.00049756 100.45 By matching By MS/MS By MS/MS 1 1 2 0.9484 0.92316 28.493 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0135 1.1288 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88745 0.9294 NaN 1 0 Median 0.8604 0.72729 32.775 2 1 Median 14408000 6958800 7449200 0 0 0 0 0 0 5159900 2203400 2956500 0 0 0 6103200 3245400 2857800 3144800 1509900 1634900 30911 486 32488 161562;161563;161564;161565 162573;162574 162574 2 SLSFVPGNDFEMSK DSLAKRCVCVSNTIRSLSFVPGNDFEMSKH RSLSFVPGNDFEMSKHPGLLLILGKLILLH R S L S K H 0 0 1 1 0 0 1 1 0 0 1 1 1 2 1 3 0 0 0 1 0 0 14 0 1556.7181 O14497;H0Y488;A0A1B0GTU5 O14497 1990 2003 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 4.2244E-06 105.46 By MS/MS By matching By matching 3 2 1 0.80381 0.87644 18.763 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7868 0.87154 5.0072 3 2 Median 1.1899 1.0583 19.939 2 0 Median 0.65274 0.68876 NaN 1 0 Median NaN NaN NaN 0 0 Median 22704000 13129000 9575700 0 0 0 0 0 0 19449000 11425000 8023900 1678400 779630 898780 1576800 923770 653060 0 0 0 30912 1480 32489 161566;161567;161568;161569;161570;161571 162575;162576;162577 162575 3 SLSGLILK IFVLTKLKSEDEPTRSLSGLILKNNVKAHF SEDEPTRSLSGLILKNNVKAHFQNFPNGVT R S L L K N 0 0 0 0 0 0 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 8 0 829.5273 Q92973;E7EW37 Q92973 74 81 TNPO1 Transportin-1 no no 2 0.016506 49.358 By MS/MS By MS/MS 3 1 1.217 1.2153 12.104 4 Median 1.2309 1.1571 14.639 3 0 Median NaN NaN NaN 0 0 Median 1.1575 1.2764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18365000 8182800 10182000 13138000 5695600 7442000 0 0 0 5227100 2487200 2739900 0 0 0 0 0 0 0 0 0 30913 3570 32490 161572;161573;161574;161575 162578;162579;162580;162581;162582 162578 5 SLSIEIGHEVK ERLTESLRSKVTAIKSLSIEIGHEVKTQNK TAIKSLSIEIGHEVKTQNKLLAEMWILQVP K S L V K T 0 0 0 0 0 0 2 1 1 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1210.6558 A0A3B3IU16;C9JTT8;Q68DU7;H7C1N3;O15155 A0A3B3IU16 48 58 BET1;DKFZp781C0425 BET1 homolog yes no 2;3 0.0002002 104.05 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.129 0.96665 11.935 7 Median 1.1443 1.0484 5.567 2 0 Median 1.2553 1.0336 9.4745 2 0 Median 0.8666 0.85781 14.445 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.129 0.9257 NaN 1 0 Median 40447000 18744000 21703000 10009000 4887700 5120900 24834000 10595000 14239000 4935600 2906700 2029000 0 0 0 0 0 0 668730 354840 313890 30914 440 32491 161576;161577;161578;161579;161580;161581;161582 162583;162584;162585;162586;162587;162588;162589;162590;162591 162589 9 SLSKGDSPVTSPFQNYSSIHSQSR PQNVATSSSLTAHLRSLSKGDSPVTSPFQN TSPFQNYSSIHSQSRSTSSPSLHSRSPSIS R S L S R S 0 1 1 1 0 2 0 1 1 1 1 1 0 1 2 8 1 0 1 1 0 0 24 1 2608.2518 Q9H1A4 Q9H1A4 307 330 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 4 0.00063245 35.94 By MS/MS 1 0.7966 0.95468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7966 0.95468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16372000 8005200 8367000 0 0 0 0 0 0 16372000 8005200 8367000 0 0 0 0 0 0 0 0 0 30915 3933 32492 161583 162592 162592 0 SLSLGGHVGFDSLPDQLVSK ATDLERFSNAEPEPRSLSLGGHVGFDSLPD GHVGFDSLPDQLVSKSVTQGFSFNILCVGE R S L S K S 0 0 0 2 0 1 0 3 1 0 4 1 0 1 1 4 0 0 0 2 0 0 20 0 2055.0637 A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 A0A087X142 18 37 SEPT8 Septin-8 yes no 2;3 1.5908E-13 101.32 By MS/MS By MS/MS 2 3 1.041 0.89277 39.063 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59942 0.57555 37.471 2 0 Median 1.1178 0.9618 18.282 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68498000 37420000 31079000 0 0 0 0 0 0 59858000 33455000 26403000 8640300 3964300 4675900 0 0 0 0 0 0 30916 118 32493 161584;161585;161586;161587;161588 162593;162594;162595;162596;162597;162598 162595 6 SLSLLASR PPKLAQEILVEVLEKSLSLLASRYARAHPS LVEVLEKSLSLLASRYARAHPSRKRTPQLR K S L S R Y 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 8 0 845.49707 Q8IV33 Q8IV33 666 673 KIAA0825 Uncharacterized protein KIAA0825 yes yes 2 0.001234 94.407 By MS/MS By MS/MS By MS/MS 1 2 1 0.056659 0.045743 81.763 3 Median NaN NaN NaN 0 0 Median 0.056659 0.045743 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.052081 0.044636 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.22314 0.1862 NaN 1 1 Median 19023000 17600000 1422600 0 0 0 12644000 11652000 991980 0 0 0 4988000 4795400 192620 0 0 0 1390800 1152800 238040 30917 3317 32494 161589;161590;161591;161592 162599;162600;162601;162602 162599 4 SLSNTKPTVNEHDLLK DKLLEPVVSMSDMLRSLSNTKPTVNEHDLL LSNTKPTVNEHDLLKLKKFTEDFGQEG___ R S L L K L 0 0 2 1 0 0 1 0 1 0 3 2 0 0 1 2 2 0 0 1 0 0 16 1 1794.9476 O75351 O75351 417 432 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 3;4 3.9569E-05 55.186 By MS/MS By matching By matching By MS/MS By matching 1 1 2 2 1 0.87894 0.87856 43.121 7 Median 0.6002 0.57451 NaN 1 0 Median 0.54935 0.51745 NaN 1 0 Median 1.0265 1.0791 48.845 2 0 Median 0.91844 0.91804 6.2164 2 0 Median 1.4581 1.5551 NaN 1 0 Median NaN NaN NaN 0 0 Median 31319000 15948000 15371000 8260100 4212400 4047700 1438000 730090 707870 5538900 2954100 2584900 13815000 7075000 6740400 2267000 976890 1290100 0 0 0 30918 1661 32495 161593;161594;161595;161596;161597;161598;161599 162603;162604;162605;162606;162607 162607 5 SLSNVIAHEISHSWTGNLVTNK PCLTFVTPTLLAGDKSLSNVIAHEISHSWT HEISHSWTGNLVTNKTWDHFWLNEGHTVYL K S L N K T 1 0 3 0 0 0 1 1 2 2 2 1 0 0 0 4 2 1 0 2 0 0 22 0 2406.2292 P09960 P09960 289 310 LTA4H Leukotriene A-4 hydrolase yes yes 3 0.05953 7.3604 By MS/MS By MS/MS 1 1 0.85102 0.80629 26.735 2 Median NaN NaN NaN 0 0 Median 0.78909 0.6674 NaN 1 0 Median 0.91782 0.97407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8211000 3977700 4233300 0 0 0 5898500 2903800 2994700 2312500 1073900 1238600 0 0 0 0 0 0 0 0 0 30919 1924 32496 161600;161601 162608;162609;162610 162608 3 SLSPEQDIK SIVTALVDKIDMCKKSLSPEQDIKFSGHVS IDMCKKSLSPEQDIKFSGHVSWVGKTSMEV K S L I K F 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 2 0 0 0 0 0 0 9 0 1015.5186 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 158 166 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 0.00055412 114.89 By MS/MS By MS/MS By MS/MS 1 1 1 1.1723 0.99276 20.449 3 Median 0.80973 0.75551 NaN 1 0 Median 1.1723 0.99276 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2583 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29478000 14466000 15012000 8820100 5200700 3619400 15598000 7071500 8527000 0 0 0 5059300 2193400 2865900 0 0 0 0 0 0 30920 4400 32497 161602;161603;161604 162611;162612;162613;162614 162613 4 SLSPFAITYLDR LKVWLGIMLPVLGIKSLSPFAITYLDRLLL GIKSLSPFAITYLDRLLLMHPNLTKGFGMI K S L D R L 1 1 0 1 0 0 0 0 0 1 2 0 0 1 1 2 1 0 1 0 0 0 12 0 1381.7242 Q6NUQ4;H7C0H8;H7C085 Q6NUQ4 289 300 TMEM214 Transmembrane protein 214 yes no 2 0.00063696 63.283 By MS/MS 1 0.96532 0.98 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96532 0.98 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15233000 7604800 7627700 0 0 0 0 0 0 15233000 7604800 7627700 0 0 0 0 0 0 0 0 0 30921 3145 32498 161605 162615;162616 162615 2 SLSPFNDVVDKTPVIR GRLRDAAQRHCEHTKSLSPFNDVVDKTPVI LSPFNDVVDKTPVIRSVILKLLLKYSFHDV K S L I R S 0 1 1 2 0 0 0 0 0 1 1 1 0 1 2 2 1 0 0 3 0 0 16 1 1785.9625 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4165 4180 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 4.2585E-05 53.777 By MS/MS 1 0.57808 0.59625 NaN 1 Median 0.57808 0.59625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6005800 3413900 2591800 6005800 3413900 2591800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30922 189 32499 161606 162617 162617 1 SLSQIHEAAVR NVTVLDTQIRKLRSRSLSQIHEAAVRMRSE LRSRSLSQIHEAAVRMRSEATDVKSTLAEI R S L V R M 2 1 0 0 0 1 1 0 1 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1209.6466 Q9NZM1;H0YD14 Q9NZM1 729 739 MYOF Myoferlin yes no 2;3 0.00067336 56.563 By MS/MS By MS/MS By matching 1 2 1 1.0693 0.92018 48.89 4 Median 2.2694 2.275 NaN 1 0 Median 0.98881 0.83035 9.8774 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0834 0.95094 NaN 1 0 Median 5621700 2554800 3066900 1043700 334230 709450 3901300 1897100 2004200 0 0 0 0 0 0 0 0 0 676750 323470 353270 30923 4192 32500 161607;161608;161609;161610 162618;162619;162620;162621;162622 162620 5 SLSQPTPPPMPILSQSEAK THAPFIEKSRSGGRKSLSQPTPPPMPILSQ PTPPPMPILSQSEAKNPRINQLSARWQQVW K S L A K N 1 0 0 0 0 2 1 0 0 1 2 1 1 0 5 4 1 0 0 0 0 0 19 0 2007.0347 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314 H3BPE1 7068 7086 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 4.0527E-10 78.486 By MS/MS 1 0.4147 0.41477 NaN 1 Median 0.4147 0.41477 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8111000 5885000 2226000 8111000 5885000 2226000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30924 1220 32501 161611 162623 162623 1 SLSSLDTALAELR YFIRLLEIQADYHRRSLSSLDTALAELREN RRSLSSLDTALAELRENHGQADHSPSMTAT R S L L R E 2 1 0 1 0 0 1 0 0 0 4 0 0 0 0 3 1 0 0 0 0 0 13 0 1374.7355 Q9Y3L3;Q6ZT62 Q9Y3L3 241 253 SH3BP1 SH3 domain-binding protein 1 yes no 2 0.00024031 79.974 By MS/MS By matching 1 1 1.3234 1.2357 7.5466 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1234 1.1715 NaN 1 0 Median 1.559 1.3035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1288400 571790 716610 0 0 0 0 0 0 1055700 482770 572970 232660 89020 143640 0 0 0 0 0 0 30925 3200 32502 161612;161613 162624;162625 162625 2 SLSSSLDDTEVK ISTTASKTETPIVSKSLSSSLDDTEVKKVM VSKSLSSSLDDTEVKKVMEECKRLQGEVQR K S L V K K 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 4 1 0 0 1 0 0 12 0 1279.6143 O95292 O95292 156 167 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2 0.001592 60.434 By MS/MS By MS/MS By MS/MS 1 1 1 1.3877 1.1755 12.627 3 Median 1.1116 1.0321 NaN 1 0 Median 1.3877 1.1755 NaN 1 0 Median 1.406 1.3286 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12569000 5524200 7044700 5296700 2503700 2792900 2280300 1072300 1207900 4991900 1948100 3043800 0 0 0 0 0 0 0 0 0 30926 1760 32503 161614;161615;161616 162626;162627;162628 162628 2 SLSSSLDDTEVKK ISTTASKTETPIVSKSLSSSLDDTEVKKVM SKSLSSSLDDTEVKKVMEECKRLQGEVQRL K S L K K V 0 0 0 2 0 0 1 0 0 0 2 2 0 0 0 4 1 0 0 1 0 0 13 1 1407.7093 O95292 O95292 156 168 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2;3 6.1274E-07 108.7 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 1.0313 1.0482 14.442 7 Median 0.95507 0.97035 10.908 2 0 Median 1.3849 1.2672 NaN 1 0 Median 0.98407 0.98032 10.87 3 1 Median 1.4059 1.2659 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62841000 31920000 30920000 33271000 16313000 16958000 2838700 1184400 1654300 23074000 12923000 10151000 3657200 1499800 2157400 0 0 0 0 0 0 30927 1760 32504 161617;161618;161619;161620;161621;161622;161623 162629;162630;162631;162632;162633;162634;162635;162636 162633 8 SLSSSVLPPSYASDR ILRKTRLDAPRLETKSLSSSVLPPSYASDR SLSSSVLPPSYASDRLSGNNRDPALKPKRS K S L D R L 1 1 0 1 0 0 0 0 0 0 2 0 0 0 2 6 0 0 1 1 0 0 15 0 1564.7733 Q6P6C2 Q6P6C2 296 310 ALKBH5 RNA demethylase ALKBH5 yes yes 2 5.6904E-07 87.363 By MS/MS By MS/MS 1 1 0.10869 0.099194 108.97 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22073 0.21436 NaN 1 1 Median 0.053522 0.045903 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131450000 122200000 9247000 0 0 0 0 0 0 46611000 40694000 5917000 84837000 81507000 3329900 0 0 0 0 0 0 30928 3163 32505 161624;161625 162637;162638 162638 2 SLSTSGESLYHVLGLDK ______________________________ STSGESLYHVLGLDKNATSDDIKKSYRKLA R S L D K N 0 0 0 1 0 0 1 2 1 0 4 1 0 0 0 4 1 0 1 1 0 0 17 0 1804.9207 Q9H3Z4 Q9H3Z4 8 24 DNAJC5 DnaJ homolog subfamily C member 5 yes yes 3 0.0055971 25.167 By MS/MS 1 1.1503 1.0812 NaN 1 Median 1.1503 1.0812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3161100 1617300 1543900 3161100 1617300 1543900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30929 3959 32506 161626 162639 162639 1 SLTAEIDR SECSARLLQQEEEIKSLTAEIDRLKNCGCL QQEEEIKSLTAEIDRLKNCGCLGASPNLEQ K S L D R L 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 0 903.46616 P54136;E5RJM9;E5RH09 P54136 21 28 RARS Arginine--tRNA ligase, cytoplasmic yes no 2 0.0033382 98.997 By MS/MS By MS/MS 1 1 1.1148 1.0132 4.5224 2 Median 1.0266 0.9813 NaN 1 0 Median 1.2105 1.0461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29169000 13395000 15773000 8974400 4529000 4445400 20194000 8866400 11328000 0 0 0 0 0 0 0 0 0 0 0 0 30930 2480 32507 161627;161628 162640;162641;162642;162643 162641 4 SLTANPELIDR IEEGIPAFTCEEYVKSLTANPELIDRLACL EYVKSLTANPELIDRLACLSEEGNEIESGK K S L D R L 1 1 1 1 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 11 0 1227.6459 Q9Y2L1;G3V1J5;F2Z2C0 Q9Y2L1 200 210 DIS3 Exosome complex exonuclease RRP44 yes no 2 1.1547E-05 102.61 By MS/MS By matching By MS/MS 1 1 2 0.7721 0.74108 8.9384 3 Median NaN NaN NaN 0 0 Median 0.7721 0.65792 NaN 1 0 Median 0.67374 0.74108 NaN 1 0 Median 0.92168 0.78376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12162000 7275400 4887000 0 0 0 3334300 1739000 1595300 5540000 3765500 1774500 3288200 1770900 1517200 0 0 0 0 0 0 30931 4384 32508 161629;161630;161631;161632 162644;162645;162646 162646 3 SLTATGGNHVTAR GVLREVTTEFTVDARSLTATGGNHVTARVL ARSLTATGGNHVTARVLNPSGAKTDTYVTD R S L A R V 2 1 1 0 0 0 0 2 1 0 1 0 0 0 0 1 3 0 0 1 0 0 13 0 1283.6582 Q14315 Q14315 1279 1291 FLNC Filamin-C yes yes 2;3 0.0003237 57.804 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 4 4 1 2 1 1 1.1276 0.95875 26.834 13 Median 1.2827 1.2775 10.419 4 0 Median 1.0534 0.88146 5.988 4 0 Median 1.3577 1.5148 NaN 1 0 Median 0.96602 0.83755 12.655 2 0 Median 1.6531 1.68 NaN 1 0 Median 0.95013 0.79147 NaN 1 0 Median 14526000 6758200 7767600 2284300 986420 1297900 10711000 5125700 5584900 308120 117120 190990 247000 118560 128440 459000 174190 284810 516810 236240 280570 30932 2871 32509 161633;161634;161635;161636;161637;161638;161639;161640;161641;161642;161643;161644;161645 162647;162648;162649;162650;162651;162652;162653;162654;162655;162656;162657;162658;162659;162660 162653 14 SLTEYLQNVEQK AACQLRISQHEAKIKSLTEYLQNVEQKKRQ KIKSLTEYLQNVEQKKRQLEESVDALSEEL K S L Q K K 0 0 1 0 0 2 2 0 0 0 2 1 0 0 0 1 1 0 1 1 0 0 12 0 1450.7304 P33176 P33176 645 656 KIF5B Kinesin-1 heavy chain yes yes 2 1.3125E-09 175.73 By MS/MS By matching By MS/MS By matching By matching 1 2 2 1 1 1.2418 1.0419 23.101 7 Median 1.08 1.0401 NaN 1 0 Median 1.2739 1.1138 21.576 2 0 Median 1.4869 1.6106 2.1253 2 1 Median 1.2418 1.0419 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1525 0.96162 NaN 1 0 Median 41785000 19005000 22780000 23674000 11204000 12470000 8220000 3803100 4416900 8010500 3141200 4869300 1235200 576150 659050 0 0 0 645250 280480 364770 30933 2221 32510 161646;161647;161648;161649;161650;161651;161652 162661;162662;162663;162664;162665 162662 5 SLTFSPDSQLLVTASDDGYIK GKLLHTLEGHAMPIRSLTFSPDSQLLVTAS DSQLLVTASDDGYIKIYDVQHANLAGTLSG R S L I K I 1 0 0 3 0 1 0 1 0 1 3 1 0 1 1 4 2 0 1 1 0 0 21 0 2256.1162 H0YL19;H0YN81;Q9GZS3;H3BQA8;H0YLA1 H0YL19 102 122 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 1.0806E-07 68.809 By MS/MS 1 0.82197 0.79329 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82197 0.79329 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1718400 1043500 674910 0 0 0 0 0 0 1718400 1043500 674910 0 0 0 0 0 0 0 0 0 30934 1194 32511 161653 162666 162666 1 SLTIAEFK SSSLNTFRSEKRYSRSLTIAEFKCKLELLV SEKRYSRSLTIAEFKCKLELLVGSPASCME R S L F K C 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 8 0 907.50148 K7EK42;A0A494C0X0;Q99426;K7EL99 K7EK42 31 38 TBCB Tubulin-folding cofactor B yes no 2 0.011309 57.177 By MS/MS By matching 2 1 1.0354 0.93905 11.294 3 Median 0.95688 0.8804 9.1212 2 0 Median 1.2309 1.0338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38886000 18984000 19902000 38586000 18860000 19726000 300130 124210 175920 0 0 0 0 0 0 0 0 0 0 0 0 30935 462 32512 161654;161655;161656 162667 162667 1 SLTISASGSTTR VALNEAESNHERRLRSLTISASGSTTRDPQ RLRSLTISASGSTTRDPQAFNKAENTDYTE R S L T R D 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 4 3 0 0 0 0 0 12 0 1179.6095 F5H269;Q9Y485 F5H269 1373 1384 DMXL1 DmX-like protein 1 yes no 2 3.6276E-05 90.108 By MS/MS By MS/MS 1 1 1.1111 1.118 NaN 1 Median 1.1111 1.118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1484200 846440 637800 1484200 846440 637800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30936 1024 32513 161657;161658 162668;162669 162669 2 SLTLNVVNR HTHMRPLLMMLGDYRSLTLNVVNRLTSVTR MLGDYRSLTLNVVNRLTSVTRLFPNSFNDK R S L N R L 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 9 0 1014.5822 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1438 1446 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00050962 101.64 By MS/MS 1 1.3124 1.3664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3124 1.3664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61629000 15900000 45729000 0 0 0 0 0 0 61629000 15900000 45729000 0 0 0 0 0 0 0 0 0 30937 991 32514 161659 162670 162670 1 SLTMSGHVGFESLPDQLVNR SQGSDDEQIKRENIRSLTMSGHVGFESLPD GHVGFESLPDQLVNRSIQQGFCFNILCVGE R S L N R S 0 1 1 1 0 1 1 2 1 0 3 0 1 1 1 3 1 0 0 2 0 0 20 0 2186.079 E7EW69;B5ME97;Q9P0V9;E7EX04;C9JEW2;C9JNR7 E7EW69 40 59 SEPT10 Septin-10 yes no 3 2.1229E-19 116.51 By matching By MS/MS By matching 2 3 3 0.77677 0.74918 64.809 8 Median 0.79124 0.82299 32.647 2 0 Median NaN NaN NaN 0 0 Median 0.82908 0.81358 13.803 3 0 Plateau 0.89602 0.78198 104.43 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45524000 25054000 20471000 4895700 2926100 1969600 0 0 0 37553000 20301000 17252000 3075700 1826800 1248900 0 0 0 0 0 0 30938 626 32515;32516 161660;161661;161662;161663;161664;161665;161666;161667 162671;162672;162673;162674 162674 237 4 SLTNDWEDHLAVK NPDDITNEEYGEFYKSLTNDWEDHLAVKHF YKSLTNDWEDHLAVKHFSVEGQLEFRALLF K S L V K H 1 0 1 2 0 0 1 0 1 0 2 1 0 0 0 1 1 1 0 1 0 0 13 0 1526.7365 P07900;P08238 P07900 315 327 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 2;3 4.4393E-07 146.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 13 13 6 5 5 9 1.1547 1.0427 22.394 51 Median 1.1629 1.0488 14.163 13 0 Median 1.1159 0.97761 9.179 13 0 Median 1.1094 1.1549 25.975 6 0 Median 1.169 1.0119 10.328 5 0 Median 1.6895 1.7189 16.175 5 0 Median 1.0989 0.92416 16.322 9 0 Median 1218800000 543870000 674960000 707830000 311810000 396020000 287200000 129540000 157660000 157110000 74914000 82192000 16389000 7614300 8774500 38539000 14445000 24095000 11768000 5551100 6217200 30939 1894;1899 32517 161668;161669;161670;161671;161672;161673;161674;161675;161676;161677;161678;161679;161680;161681;161682;161683;161684;161685;161686;161687;161688;161689;161690;161691;161692;161693;161694;161695;161696;161697;161698;161699;161700;161701;161702;161703;161704;161705;161706;161707;161708;161709;161710;161711;161712;161713;161714;161715;161716;161717;161718 162675;162676;162677;162678;162679;162680;162681;162682;162683;162684;162685;162686;162687;162688;162689;162690;162691;162692;162693;162694;162695;162696;162697;162698;162699;162700;162701;162702;162703;162704;162705;162706;162707;162708;162709;162710;162711;162712;162713;162714;162715;162716;162717;162718;162719;162720;162721;162722;162723;162724;162725;162726;162727;162728;162729;162730;162731;162732;162733;162734;162735 162702 61 SLTPAVPVESKPDKPSGK TAISGKPGDKKKEKKSLTPAVPVESKPDKP PAVPVESKPDKPSGKSGMDAALDDLIDTLG K S L G K S 1 0 0 1 0 0 1 1 0 0 1 3 0 0 4 3 1 0 0 2 0 0 18 2 1835.9993 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;F8W7E0;H0YA91;E7EQK6;E9PSG1;H0Y944 P20810 133 150 CAST Calpastatin yes no 3 0.00010293 40.515 By MS/MS By matching By matching By MS/MS 1 1 1 2 0.55027 0.64786 29.988 5 Median 0.61804 0.64786 NaN 1 0 Median 0.8275 0.80737 NaN 1 0 Median 0.55027 0.67125 NaN 1 0 Median 0.40027 0.41719 2.4965 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8420500 5258700 3161800 2848500 1600000 1248400 591590 291250 300330 1652000 1094000 558000 3328400 2273400 1055000 0 0 0 0 0 0 30940 239 32518 161719;161720;161721;161722;161723 162736;162737;162738 162737 3 SLTQSYLR GRLPMPEDYAMDELRSLTQSYLRELAVGSL YAMDELRSLTQSYLRELAVGSL________ R S L L R E 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 8 0 966.51345 P52948;H7C3P6 P52948 1803 1810 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0029579 132.29 By matching By MS/MS By MS/MS By MS/MS 1 2 3 1 1.4608 1.2169 67.757 7 Median NaN NaN NaN 0 0 Median 8.096 7.1894 NaN 1 0 Median 1.0843 1.1709 5.4526 2 0 Median 1.7972 1.5337 34.539 3 0 Median NaN NaN NaN 0 0 Median 1.4608 1.1915 NaN 1 0 Median 23220000 9785400 13434000 0 0 0 1167800 142930 1024800 15940000 7373400 8566700 5183600 1973100 3210500 0 0 0 928100 295890 632210 30941 2462 32519 161724;161725;161726;161727;161728;161729;161730 162739;162740;162741;162742;162743;162744;162745 162739 7 SLTQTFATVEVGR AVSVHSNLNSEAVMKSLTQTFATVEVGRWN MKSLTQTFATVEVGRWNNNKKSPIKASDLT K S L G R W 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 3 0 0 2 0 0 13 0 1407.7358 Q5QJE6;J3KP30 Q5QJE6 362 374 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 2 1.9408E-05 94.616 By MS/MS By matching 3 2 1.1475 1.1147 24.396 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1475 1.1617 22.995 3 0 Median 1.1327 0.93319 3.3965 2 0 Median 25206000 11409000 13797000 0 0 0 0 0 0 0 0 0 0 0 0 24374000 11010000 13364000 832350 399550 432800 30942 3067 32520 161731;161732;161733;161734;161735 162746;162747 162746 2 SLTSATSTSNIQSSASQPPRPQQGQVK AVSAPNTVSSTPGQKSLTSATSTSNIQSSA SSASQPPRPQQGQVKLTMAQLTQLTQGHGG K S L V K L 2 1 1 0 0 5 0 1 0 1 1 1 0 0 3 7 3 0 0 1 0 0 27 1 2784.4002 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 2246 2272 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 5.2864E-20 70.994 By MS/MS By MS/MS By matching 2 3 1 0.66507 0.63361 11.276 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50229 0.5928 0.035407 2 0 Median 0.70133 0.67705 8.4642 3 0 Median NaN NaN NaN 0 0 Median 0.88854 0.77793 NaN 1 0 Median 72161000 44782000 27379000 0 0 0 0 0 0 48054000 31226000 16828000 23166000 13052000 10114000 0 0 0 940660 503630 437030 30943 2762 32521 161736;161737;161738;161739;161740;161741 162748;162749;162750;162751;162752;162753;162754;162755 162755 8 SLTSSLENIFSR SGRFKLDILKNKAKRSLTSSLENIFSRGAN AKRSLTSSLENIFSRGANRMRGRLGSVDSF R S L S R G 0 1 1 0 0 0 1 0 0 1 2 0 0 1 0 4 1 0 0 0 0 0 12 0 1352.6936 O60343;A0A3B3IRT3;Q5JU47 O60343 566 577 TBC1D4 TBC1 domain family member 4 yes no 2 0.00063206 64.297 By MS/MS By matching 1 2 1.1916 1.0336 54.553 3 Median 1.01 1.0144 NaN 1 0 Median 1.7811 1.6499 66.142 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3959500 1780100 2179400 1550000 755140 794890 2409500 1024900 1384500 0 0 0 0 0 0 0 0 0 0 0 0 30944 416 32522 161742;161743;161744 162756;162757 162756 2 SLTSSSSVR ______________________________ ______________________________ M S L V R V 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 5 1 0 0 1 0 0 9 0 922.47197 Q9NZ45 Q9NZ45 2 10 CISD1 CDGSH iron-sulfur domain-containing protein 1 yes yes 2 0.019738 40.002 By MS/MS 1 0.83844 0.81987 NaN 1 Median 0.83844 0.81987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1809100 890250 918800 1809100 890250 918800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30945 4184 32523 161745 162758;162759 162758 2 SLTTITELQR SIEQEIKDQKERCDKSLTTITELQRRIQES ERCDKSLTTITELQRRIQESAKQIEAKDNK K S L Q R R 0 1 0 0 0 1 1 0 0 1 2 0 0 0 0 1 3 0 0 0 0 0 10 0 1160.6401 F5H2B9;H0YNH8;Q9BZF9 F5H2B9 1187 1196 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 2 0.0022064 76.827 By MS/MS 1 0.69278 0.76193 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69278 0.76193 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6848200 4182900 2665300 0 0 0 0 0 0 6848200 4182900 2665300 0 0 0 0 0 0 0 0 0 30946 1026 32524 161746 162760 162760 1 SLTTSQYLMHEVAK YYFSAHALKLSRNGKSLTTSQYLMHEVAKQ KSLTTSQYLMHEVAKQLDLNPNRFPIFAAL K S L A K Q 1 0 0 0 0 1 1 0 1 0 2 1 1 0 0 2 2 0 1 1 0 0 14 0 1606.8025 Q9NZB2;A0A0C4DH52 Q9NZB2 211 224 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 3 0.0063947 41.621 By MS/MS By MS/MS 2 1 1.2342 1.2029 18.785 3 Median 1.1249 1.0955 13.232 2 2 Median NaN NaN NaN 0 0 Median 1.3401 1.4525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15627000 7373900 8253300 11643000 5592000 6051300 0 0 0 3983900 1781900 2202000 0 0 0 0 0 0 0 0 0 30947 4186 32525 161747;161748;161749 162761;162762;162763 162761 3 SLTVSDDAESSEPER KIVTSVRRRGRKPKRSLTVSDDAESSEPER SLTVSDDAESSEPERKRQKSVSDPVEDKKE R S L E R K 1 1 0 2 0 0 3 0 0 0 1 0 0 0 1 4 1 0 0 1 0 0 15 0 1620.7115 Q8NFC6;H0Y9Y2 Q8NFC6 2954 2968 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 2 3.6839E-06 89.403 By MS/MS 1 0.68784 0.76395 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68784 0.76395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2303400 1078900 1224500 0 0 0 0 0 0 2303400 1078900 1224500 0 0 0 0 0 0 0 0 0 30948 3434 32526 161750 162764 162764 1 SLTYGPLVADFK S L F K 1 0 0 1 0 0 0 1 0 0 2 1 0 1 1 1 1 0 1 1 0 0 12 0 1309.6918 REV__O14686 yes yes 2 0.0010572 57.598 By MS/MS 2 1.3222 1.0825 0 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3222 1.0825 0 2 0 Median 15302000000 6265100000 9037300000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15302000000 6265100000 9037300000 + 30949 4532 32527 161751;161752 162765;162766;162767;162768;162769;162770;162771;162772 162769 7 SLTYLSILR SLVELGDLDPLASLKSLTYLSILRNPVTNK PLASLKSLTYLSILRNPVTNKKHYRLYVIY K S L L R N 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 1 0 1 0 0 0 9 0 1064.623 P09661;H0YMA0;H0YKK0 P09661 114 122 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00039751 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 3 1 1.2109 1.1161 11.475 8 Median 1.1747 1.1218 22.423 2 0 Median NaN NaN NaN 0 0 Median 1.0908 1.0474 NaN 1 0 Median 1.3475 1.119 NaN 1 0 Median 1.1813 1.2377 8.8765 3 0 Median 1.3042 1.0762 NaN 1 0 Median 142790000 66264000 76524000 20239000 8470000 11769000 0 0 0 38123000 18248000 19875000 5788900 2385100 3403800 75895000 35916000 39979000 2742300 1244700 1497600 30950 1920 32528 161753;161754;161755;161756;161757;161758;161759;161760 162773;162774;162775;162776;162777;162778;162779;162780;162781;162782;162783;162784 162773 12 SLVALLVETQMK VKAKHLAAVEERKIKSLVALLVETQMKKLE KIKSLVALLVETQMKKLEIKLRHFEELETI K S L M K K 1 0 0 0 0 1 1 0 0 0 3 1 1 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 886 897 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.00052736 76.143 By matching By MS/MS By matching By matching 1 2 2 1 0.96108 1.0311 26.368 6 Median NaN NaN NaN 0 0 Median 0.61622 0.55374 NaN 1 0 Median 0.96108 1.0418 7.423 2 0 Median 1.2208 1.082 0.83859 2 0 Median 0.85235 0.89144 NaN 1 0 Median NaN NaN NaN 0 0 Median 10669000 5750000 4919400 0 0 0 514620 430300 84320 8745600 4518500 4227100 355260 169380 185880 1054000 631860 422150 0 0 0 30951 3455;3567 32529;32530 161761;161762;161763;161764;161765;161766 162785;162786;162787;162788 162788 1736 4 SLVASLAEPDFVVTDFAK GIVSQVKVPKKISFKSLVASLAEPDFVVTD ASLAEPDFVVTDFAKFSRPAQLHIGFQALH K S L A K F 3 0 0 2 0 0 1 0 0 0 2 1 0 2 1 2 1 0 0 3 0 0 18 0 1907.988 P22314 P22314 305 322 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 1.1384E-12 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 5 2 2 2 1.1194 0.97669 18.544 14 Median 0.8777 0.83525 4.757 3 0 Plateau 1.1108 0.93577 4.6488 5 0 Median NaN NaN NaN 0 0 Median 1.1636 0.99513 3.6842 2 0 Median 1.4387 1.4326 2.4957 2 1 Median 1.2931 1.1141 0.17404 2 0 Median 209010000 105940000 103080000 158830000 83299000 75528000 45973000 20904000 25069000 0 0 0 800850 365890 434960 3162900 1256700 1906100 247470 109850 137620 30952 2100 32531 161767;161768;161769;161770;161771;161772;161773;161774;161775;161776;161777;161778;161779;161780 162789;162790;162791;162792;162793;162794;162795;162796;162797;162798;162799;162800;162801;162802;162803;162804;162805 162790 17 SLVATFIVK HIALLAPDQFAAPLKSLVATFIVKDLLMND FAAPLKSLVATFIVKDLLMNDRLPGKKTTK K S L V K D 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 2 0 0 9 0 976.59572 Q9NTI5 Q9NTI5 787 795 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.01317 45.68 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 2 1 1.2079 1.0519 16.393 9 Median 1.5254 1.4417 NaN 1 0 Median 1.5141 1.3135 NaN 1 0 Median 0.94284 0.99748 2.2941 2 0 Median 1.2136 1.0747 3.029 2 0 Median 0.87787 0.91545 15.563 2 0 Median 1.2624 1.0969 NaN 1 0 Median 17820000 8713600 9106300 1033200 379930 653250 472660 189560 283100 10681000 5368100 5312900 529010 225720 303290 4976000 2497500 2478500 128050 52831 75217 30953 4107 32532 161781;161782;161783;161784;161785;161786;161787;161788;161789 162806;162807;162808 162806 3 SLVDLTAVDVPTR PVLTFLRDHTNAQFKSLVDLTAVDVPTRQN FKSLVDLTAVDVPTRQNRFEIVYNLLSLRF K S L T R Q 1 1 0 2 0 0 0 0 0 0 2 0 0 0 1 1 2 0 0 3 0 0 13 0 1384.7562 O75489;E9PS48 O75489 110 122 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes no 2 6.6201E-07 127.42 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1262 0.99435 20.338 4 Median 0.86339 0.82142 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0275 0.98658 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3564 1.3433 NaN 1 0 Median 1.2344 1.0022 NaN 1 0 Median 72737000 35968000 36768000 60775000 31327000 29447000 0 0 0 6908100 3015300 3892800 0 0 0 3698600 1040900 2657700 1355100 584790 770270 30954 1678 32533 161790;161791;161792;161793 162809;162810;162811;162812;162813;162814 162812 6 SLVEIADTVPK AVNDSCYQNDDSVLKSLVEIADTVPKYLRP SVLKSLVEIADTVPKYLRPHLEATLQLSLK K S L P K Y 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 11 0 1170.6496 O00410;H0Y8C6 O00410 239 249 IPO5 Importin-5 yes no 2 0.00016746 91.584 By MS/MS By matching By matching By matching 1 1 2 1 0.91294 0.85625 33.054 5 Median 0.89019 0.85625 NaN 1 0 Median 0.91294 0.77143 NaN 1 0 Median 1.1894 1.2909 36.106 2 0 Median 0.8666 0.73628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49978000 25359000 24619000 28448000 14710000 13739000 14247000 7349500 6897500 5168100 2198100 2970000 2114700 1102100 1012500 0 0 0 0 0 0 30955 1460 32534 161794;161795;161796;161797;161798 162815;162816 162816 2 SLVEIIEHGLVDEQQK QIAILMGCAILPHLRSLVEIIEHGLVDEQQ LVEIIEHGLVDEQQKVRTISALAIAALAEA R S L Q K V 0 0 0 1 0 2 3 1 1 2 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1835.9629 O75533 O75533 685 700 SF3B1 Splicing factor 3B subunit 1 yes yes 2 1.1556E-06 91.936 By matching By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1 0.97297 1.026 54.282 7 Median 0.90029 0.90781 NaN 1 0 Median 0.86013 0.77467 78.122 3 0 Median 0.97297 1.0533 NaN 1 0 Median 1.182 1.026 NaN 1 0 Median 1.0741 1.1046 NaN 1 0 Median NaN NaN NaN 0 0 Median 11838000 5740700 6097500 1325300 652890 672390 5751700 2735800 3015800 3009100 1500100 1509100 180210 82331 97874 1571900 769630 802300 0 0 0 30956 1683 32535 161799;161800;161801;161802;161803;161804;161805 162817;162818;162819 162819 3 SLVEIIEHGLVDEQQKVR QIAILMGCAILPHLRSLVEIIEHGLVDEQQ EIIEHGLVDEQQKVRTISALAIAALAEAAT R S L V R T 0 1 0 1 0 2 3 1 1 2 2 1 0 0 0 1 0 0 0 3 0 0 18 1 2091.1324 O75533 O75533 685 702 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.033487 14.254 By MS/MS 1 1.0962 1.2536 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0962 1.2536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 958730 495150 463580 0 0 0 0 0 0 958730 495150 463580 0 0 0 0 0 0 0 0 0 30957 1683 32536 161806 162820;162821 162821 2 SLVEPKEDEKGDDVDDPENQNSALADTDASGGLTK PEDDGHALLAERIEKSLVEPKEDEKGDDVD NSALADTDASGGLTKESPDTNGPKQKEKED K S L T K E 3 0 2 7 0 1 4 3 0 0 3 3 0 0 2 3 2 0 0 2 0 0 35 2 3658.6606 Q02952 Q02952 1691 1725 AKAP12 A-kinase anchor protein 12 yes yes 4 5.6442E-16 55.033 By MS/MS 2 0.72715 0.82693 18.634 2 Median 0.72715 0.82693 18.634 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20987000 10615000 10372000 20987000 10615000 10372000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30958 2705 32537 161807;161808 162822;162823 162823 2 SLVESVSSSPNK QISDSPFRCTQEEARSLVESVSSSPNKESN EARSLVESVSSSPNKESNEEEQVWHFLGK_ R S L N K E 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 5 0 0 0 2 0 0 12 0 1232.6248 Q9H2U2 Q9H2U2 309 320 PPA2 Inorganic pyrophosphatase 2, mitochondrial yes yes 2 3.6978E-06 107.24 By MS/MS By matching 1 1 0.32905 0.34484 132.71 2 Median 0.94153 0.88137 NaN 1 0 Median 0.115 0.13492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10152000 5871000 4280500 7392800 3429300 3963500 2758800 2441700 317040 0 0 0 0 0 0 0 0 0 0 0 0 30959 3947 32538 161809;161810 162824 162824 1 SLVFEDDLR HYNIWKEVVDRGLQKSLVFEDDLRFEIFFK DRGLQKSLVFEDDLRFEIFFKRRLMNLMRD K S L L R F 0 1 0 2 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 9 0 1092.5451 Q8NBJ5;M0QX72 Q8NBJ5 431 439 COLGALT1 Procollagen galactosyltransferase 1 yes no 2 0.039605 33.797 By matching By MS/MS By MS/MS 1 1 2 1.3527 1.1385 7.3668 4 Linear 1.1336 1.1475 NaN 1 0 Median 1.3373 1.1593 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1218 1.0576 9.3302 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4796000 2152300 2643700 797530 494950 302580 2594000 1162200 1431800 0 0 0 1404500 495180 909290 0 0 0 0 0 0 30960 3404 32539 161811;161812;161813;161814 162825;162826 162825 2 SLVGGLLQSK SPRLPISASHSSKTRSLVGGLLQSKFTSGA SSKTRSLVGGLLQSKFTSGAFLSPSVSVQE R S L S K F 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 2 0 0 0 1 0 0 10 0 1000.5917 P52948;A0A3B3ITD8;H7C3P6 P52948 1043 1052 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.00057276 73.233 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 3 1.3376 1.2556 20.145 11 Median 1.7312 1.7392 NaN 1 0 Median 1.8303 1.636 22.724 2 0 Median 1.1364 1.2311 3.6957 2 0 Median 1.4826 1.2927 20.444 2 0 Median 1.2143 1.2556 NaN 1 0 Median 1.4214 1.1811 10.666 3 0 Plateau 31047000 13426000 17621000 1649300 722280 927060 1796900 664730 1132200 19251000 8380100 10871000 3027200 1285800 1741400 3619100 1651000 1968100 1703000 722050 980950 30961 2462 32540 161815;161816;161817;161818;161819;161820;161821;161822;161823;161824;161825 162827;162828;162829;162830;162831;162832 162828 6 SLVGKDVVVELK ______________________________ FFKSLVGKDVVVELKNDLSICGTLHSVDQY K S L L K N 0 0 0 1 0 0 1 1 0 0 2 2 0 0 0 1 0 0 0 4 0 0 12 1 1284.7653 Q9Y333 Q9Y333 9 20 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2;3 0.00017773 124.42 By MS/MS By MS/MS By MS/MS 2 3 2 1.1687 1.0558 15.296 7 Median 1.0778 1.0093 11.448 2 1 Median 1.2788 1.1086 19.583 3 0 Median 0.9149 0.92934 18.036 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47896000 22764000 25132000 14555000 7265100 7290200 20142000 8720700 11422000 13198000 6778400 6420000 0 0 0 0 0 0 0 0 0 30962 4405 32541 161826;161827;161828;161829;161830;161831;161832 162833;162834;162835;162836;162837;162838;162839;162840 162835 8 SLVGLGGTK GGGGGGFGGGGFGSRSLVGLGGTKSISISV GGFGSRSLVGLGGTKSISISVAGGGGGFGA R S L T K S 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 830.48617 CON__P35908;CON__P35908v2;P35908 CON__P35908 62 70 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00016701 116.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 9 7 10 3 3 0.073516 0.063034 108.31 38 Median 0.075076 0.072496 113.93 9 9 Median 0.055218 0.047243 119.25 9 9 Median 0.13298 0.13306 72.399 6 6 Median 0.037305 0.029844 73.964 8 8 Median 0.032809 0.034677 70.254 3 3 Median 0.07593 0.062646 132.54 3 3 Median 894920000 851770000 43151000 96329000 88786000 7542100 207500000 191310000 16197000 58469000 52380000 6089100 206710000 200510000 6194700 70305000 67209000 3096100 255600000 251570000 4032400 + 30963 764;765 32542 161833;161834;161835;161836;161837;161838;161839;161840;161841;161842;161843;161844;161845;161846;161847;161848;161849;161850;161851;161852;161853;161854;161855;161856;161857;161858;161859;161860;161861;161862;161863;161864;161865;161866;161867;161868;161869;161870;161871;161872;161873;161874 162841;162842;162843;162844;162845;162846;162847;162848;162849;162850;162851;162852;162853;162854;162855;162856;162857;162858;162859;162860;162861;162862;162863;162864;162865;162866;162867;162868;162869;162870;162871;162872;162873;162874;162875;162876;162877;162878;162879;162880;162881;162882;162883;162884;162885;162886 162857 46 SLVHAGVPASYLLIPAASYVLPEVSK VVDSRPWLEGRHTLRSLVHAGVPASYLLIP LLIPAASYVLPEVSKVLLGAHALLANGSVM R S L S K V 4 0 0 0 0 0 1 1 1 1 4 1 0 0 3 4 0 0 2 4 0 0 26 0 2680.484 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 372 397 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 3 2.7323E-19 63.573 By MS/MS By MS/MS By matching By MS/MS 2 1 1 2 0.66976 0.6081 14.568 6 Median 0.61658 0.59996 3.4494 2 0 Median 0.65467 0.56448 NaN 1 0 Median 0.82469 0.84235 NaN 1 0 Median 0.7282 0.63253 7.1145 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9558200 5632900 3925300 4698600 2789300 1909300 2601500 1643700 957850 1485300 769760 715520 772830 430170 342660 0 0 0 0 0 0 30964 16 32543 161875;161876;161877;161878;161879;161880 162887;162888;162889;162890;162891 162888 5 SLVHDLFQK EKELQKLTQEETNFKSLVHDLFQKVEEAKS EETNFKSLVHDLFQKVEEAKSSLAMNRSRG K S L Q K V 0 0 0 1 0 1 0 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1085.5869 Q9NTJ3;E9PD53 Q9NTJ3 574 582 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.028146 50.703 By MS/MS By MS/MS By matching 1 1 1 1.1413 1.1334 11.844 3 Median NaN NaN NaN 0 0 Median 1.1413 1.0118 NaN 1 0 Median 1.0459 1.1334 NaN 1 1 Median 1.262 1.2821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12892000 5583400 7308700 0 0 0 6351300 2603300 3748000 5103200 2549500 2553600 1437600 430490 1007200 0 0 0 0 0 0 30965 4108 32544 161881;161882;161883 162892;162893 162892 2 SLVHDLFQKVEEAK EKELQKLTQEETNFKSLVHDLFQKVEEAKS KSLVHDLFQKVEEAKSSLAMNRSRGKVLDA K S L A K S 1 0 0 1 0 1 2 0 1 0 2 2 0 1 0 1 0 0 0 2 0 0 14 1 1641.8726 Q9NTJ3;E9PD53 Q9NTJ3 574 587 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.013765 24.935 By MS/MS By matching By MS/MS 1 1 1 1.0359 1.1825 22.477 3 Median 1.0359 1.0002 NaN 1 1 Median 1.6447 1.5608 NaN 1 0 Median 1.0333 1.1825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14747000 6703400 8043800 11087000 5032000 6055200 615820 270130 345690 3044100 1401200 1642900 0 0 0 0 0 0 0 0 0 30966 4108 32545 161884;161885;161886 162894;162895;162896 162895 3 SLVIELDK DDPSKQKRKFSSFFKSLVIELDKELYGPDN KFSSFFKSLVIELDKELYGPDNHLVEWHRM K S L D K E 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 915.5277 J3KMX2;B9EGA3;Q92925;Q6STE5;Q96GM5;F8VZ70;F8VRQ4 J3KMX2 180 187 SMARCD2;SMARCD3;SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 no no 2 0.042262 36.395 By matching By MS/MS 1 1 1.4201 1.3365 11.917 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4229 1.454 NaN 1 0 Median 1.4172 1.2285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4136200 2016100 2120100 0 0 0 0 0 0 3300200 1661400 1638800 836030 354690 481340 0 0 0 0 0 0 30967 655;3659;3183 32546 161887;161888 162897 162897 1 SLVIPEKFQHILR ______________________________ ______________________________ M S L L R V 0 1 0 0 0 1 1 0 1 2 2 1 0 1 1 1 0 0 0 1 0 0 13 1 1578.9246 P62269;A0A0G2JQH2;Q5GGW2 P62269 2 14 RPS18 40S ribosomal protein S18 yes no 2;3 3.8496E-07 136.63 By MS/MS By matching By MS/MS By matching By MS/MS 3 1 1 1 2 0.99349 1.0242 35.902 8 Median 1.04 1.0173 45.948 3 0 Plateau 1.1688 1.0311 NaN 1 0 Median 0.99447 1.0373 NaN 1 0 Median 0.64147 0.56784 NaN 1 0 Median 1.0595 1.1514 14.644 2 0 Median NaN NaN NaN 0 0 Median 96082000 47117000 48965000 81092000 40108000 40984000 1206300 540940 665410 2915600 1362700 1552800 77329 37128 40201 10791000 5067900 5723000 0 0 0 30968 2578 32547 161889;161890;161891;161892;161893;161894;161895;161896 162898;162899;162900;162901;162902;162903;162904;162905;162906;162907;162908;162909 162904 12 SLVKWESENK GEEFEEQTVDGRPCKSLVKWESENKMVCEQ GRPCKSLVKWESENKMVCEQKLLKGEGPKT K S L N K M 0 0 1 0 0 0 2 0 0 0 1 2 0 0 0 2 0 1 0 1 0 0 10 1 1218.6245 P29373 P29373 84 93 CRABP2 Cellular retinoic acid-binding protein 2 yes yes 3 0.015848 28.177 By MS/MS By matching 1 1 1.0649 1.0885 52.32 2 Median 0.80291 0.7519 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4125 1.5758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2810300 1407600 1402800 1617000 863750 753200 0 0 0 1193400 543820 649560 0 0 0 0 0 0 0 0 0 30969 2171 32548 161897;161898 162910;162911 162911 2 SLVMHTPPVLK PNTPLKRGEAPTKRKSLVMHTPPVLKKIIK TKRKSLVMHTPPVLKKIIKEQPQPSGKQES K S L L K K 0 0 0 0 0 0 0 0 1 0 2 1 1 0 2 1 1 0 0 2 0 0 11 0 1220.6951 P46013 P46013 538 548 MKI67 Antigen KI-67 yes yes 2;3 0.00083067 68.371 By MS/MS 3 0.85954 0.91938 38.022 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85954 0.91938 38.022 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25865000 13806000 12059000 0 0 0 0 0 0 25865000 13806000 12059000 0 0 0 0 0 0 0 0 0 30970 2335 32549;32550 161899;161900;161901 162912;162913;162914 162912 1061 3 SLVMHTPPVLKK PNTPLKRGEAPTKRKSLVMHTPPVLKKIIK KRKSLVMHTPPVLKKIIKEQPQPSGKQESG K S L K K I 0 0 0 0 0 0 0 0 1 0 2 2 1 0 2 1 1 0 0 2 0 0 12 1 1348.7901 P46013 P46013 538 549 MKI67 Antigen KI-67 yes yes 3 0.0051239 32.159 By MS/MS By matching 2 1 0.77186 0.87427 18.155 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75985 0.8671 1.1642 2 0 Median NaN NaN NaN 0 0 Median 1.1238 1.1871 NaN 1 0 Median NaN NaN NaN 0 0 Median 22077000 12391000 9686100 0 0 0 0 0 0 20106000 11509000 8596900 0 0 0 1970800 881630 1089200 0 0 0 30971 2335 32551 161902;161903;161904 162915;162916 162915 2 SLVNLGGSK GGGGSFGAGGGFGSRSLVNLGGSKSISISV GGFGSRSLVNLGGSKSISISVARGGGRGSG R S L S K S 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 873.49198 P04264;CON__P04264 P04264 66 74 KRT1 Keratin, type II cytoskeletal 1 yes no 2 3.4625E-08 140.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 9 5 7 2 4 0.017045 0.01646 104.12 15 Median 0.025343 0.023959 134.48 4 4 Median 0.012655 0.011211 78.759 6 6 Median NaN NaN NaN 0 0 Median 0.016676 0.015959 86.586 4 4 Median NaN NaN NaN 0 0 Median 0.10727 0.086837 NaN 1 1 Median 1426500000 1420100000 6390100 80155000 78776000 1378800 224120000 221660000 2460500 82861000 82861000 0 262680000 261090000 1584900 58091000 58091000 0 718580000 717610000 965920 + 30972 1848 32552 161905;161906;161907;161908;161909;161910;161911;161912;161913;161914;161915;161916;161917;161918;161919;161920;161921;161922;161923;161924;161925;161926;161927;161928;161929;161930;161931;161932;161933;161934;161935;161936;161937;161938;161939 162917;162918;162919;162920;162921;162922;162923;162924;162925;162926;162927;162928;162929;162930;162931;162932;162933;162934;162935;162936;162937;162938;162939;162940;162941;162942;162943;162944;162945;162946;162947;162948;162949;162950;162951;162952 162937 36 SLVNLGGSKSISISVAR GGGGSFGAGGGFGSRSLVNLGGSKSISISV VNLGGSKSISISVARGGGRGSGFGGGYGGG R S L A R G 1 1 1 0 0 0 0 2 0 2 2 1 0 0 0 5 0 0 0 2 0 0 17 1 1686.9628 P04264;CON__P04264 P04264 66 82 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 4.679E-08 73.466 By MS/MS By MS/MS 1 1 0.06236 0.063527 NaN 1 Median 0.06236 0.063527 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2525800 2420500 105290 2525800 2420500 105290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 30973 1848 32553 161940;161941 162953;162954 162954 2 SLVPAAELLESR EEQEQKGRLCFEGLRSLVPAAELLESRVID GLRSLVPAAELLESRVIDRELYQQLQRGER R S L S R V 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 2 0 0 0 1 0 0 12 0 1283.7085 Q15149;H0YDN1 Q15149 3116 3127 PLEC Plectin yes no 2 3.7563E-05 96.015 By matching By MS/MS By matching By matching 1 1 1 1 1.0466 1.0366 15.564 4 Median NaN NaN NaN 0 0 Median 0.96223 0.84085 NaN 1 0 Median 0.94083 0.98533 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1385 1.212 NaN 1 0 Median 1.302 1.0905 NaN 1 0 Median 41736000 20956000 20780000 0 0 0 9272800 4424400 4848400 28878000 14874000 14004000 0 0 0 1805200 822400 982850 1780300 835080 945210 30974 2933 32554 161942;161943;161944;161945 162955;162956;162957 162956 3 SLVPQLR SVVKISYKGTPAMRRSLVPQLRSGKFNVLL KGTPAMRRSLVPQLRSGKFNVLLTTYEYII R S L L R S 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RQE1 P51531 813 819 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.011345 80.377 By MS/MS 1 0.76262 0.84271 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76262 0.84271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4202300 2396000 1806300 0 0 0 0 0 0 4202300 2396000 1806300 0 0 0 0 0 0 0 0 0 30975 2433 32555 161946 162958;162959 162958 2 SLVPQVSQATGVQLPGK AVVTTNLTPVQTPARSLVPQVSQATGVQLP VPQVSQATGVQLPGKTITPAHFQLLRQQQQ R S L G K T 1 0 0 0 0 3 0 2 0 0 2 1 0 0 2 2 1 0 0 3 0 0 17 0 1707.9519 Q96L91 Q96L91 2728 2744 EP400 E1A-binding protein p400 yes yes 2 6.7118E-06 83.314 By MS/MS 2 0.63964 0.69609 5.9722 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63964 0.69609 5.9722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19138000 11504000 7634700 0 0 0 0 0 0 19138000 11504000 7634700 0 0 0 0 0 0 0 0 0 30976 3700 32556 161947;161948 162960;162961 162961 2 SLVQEMVGSFGK INVDDFKIIYIAPMRSLVQEMVGSFGKRLA PMRSLVQEMVGSFGKRLATYGITVAELTGD R S L G K R 0 0 0 0 0 1 1 2 0 0 1 1 1 1 0 2 0 0 0 2 0 0 12 0 1280.6435 O75643;A0A494C1A5 O75643 546 557 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 6.3504E-06 102.06 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 3 4 3 2 1.1478 1.1251 26.802 14 Median 1.2449 1.2214 5.0977 2 0 Median 1.1097 0.98109 52.056 3 0 Median 0.95272 1.0371 5.5447 4 0 Median 1.2913 1.1539 2.8996 3 0 Plateau 1.1478 1.1918 3.0886 2 0 Median NaN NaN NaN 0 0 Median 94777000 43046000 51731000 14738000 6149100 8589000 4341600 2234300 2107300 53622000 24500000 29122000 11680000 5279900 6400000 10395000 4882600 5512500 0 0 0 30977 1688 32557;32558 161949;161950;161951;161952;161953;161954;161955;161956;161957;161958;161959;161960;161961;161962 162962;162963;162964;162965;162966;162967;162968;162969;162970;162971;162972;162973;162974;162975;162976;162977 162962 557 16 SLVQEMVGSFGKR INVDDFKIIYIAPMRSLVQEMVGSFGKRLA MRSLVQEMVGSFGKRLATYGITVAELTGDH R S L K R L 0 1 0 0 0 1 1 2 0 0 1 1 1 1 0 2 0 0 0 2 0 0 13 1 1436.7446 O75643;A0A494C1A5 O75643 546 558 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 0.0026039 62.303 By matching By MS/MS By matching 2 3 1 1.1805 1.3158 13.368 6 Median 1.3976 1.4288 5.9042 2 0 Median NaN NaN NaN 0 0 Median 1.0946 1.2634 17.426 3 1 Median NaN NaN NaN 0 0 Median 1.0587 1.2019 NaN 1 0 Median NaN NaN NaN 0 0 Median 13472000 6450300 7021400 3624600 1511200 2113400 0 0 0 8081500 4039100 4042400 0 0 0 1765700 900070 865610 0 0 0 30978 1688 32559 161963;161964;161965;161966;161967;161968 162978;162979 162979 2 SLVQGELVTASK AGPQSQVLCGVVMDRSLVQGELVTASKAII MDRSLVQGELVTASKAIIEKEYQPHVIVST R S L S K A 1 0 0 0 0 1 1 1 0 0 2 1 0 0 0 2 1 0 0 2 0 0 12 0 1230.682 E7EV99;E7ENY0;P35611;H0Y9H2 E7EV99 532 543 ADD1 Alpha-adducin yes no 2 4.28E-06 104.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1.1411 1.0678 42.678 11 Median 0.84769 0.7857 117.84 2 1 Median 1.1407 0.99477 31.098 2 0 Median 1.0987 1.1528 1.9436 2 1 Median 1.1314 0.99398 10.136 2 0 Median 1.352 1.3928 NaN 1 1 Median 1.0989 0.91891 21.144 2 0 Median 93838000 43230000 50608000 12899000 4705600 8193100 4466300 2061300 2405000 52101000 25674000 26427000 14734000 6474600 8259900 5880400 2613200 3267200 3757000 1701900 2055100 30979 866 32560 161969;161970;161971;161972;161973;161974;161975;161976;161977;161978;161979 162980;162981;162982;162983;162984;162985;162986;162987;162988;162989;162990 162987 11 SLVSGLIR IYCSRSKADYTSHLRSLVSGLIRLFNDSSP DYTSHLRSLVSGLIRLFNDSSPVVLEESWD R S L I R L 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 Q92616 Q92616 2192 2199 GCN1L1 Translational activator GCN1 yes yes 2 0.0025057 122.79 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 3 1.3901 1.1767 14.441 7 Median 1.1726 1.1019 NaN 1 0 Median 1.2763 1.0509 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3668 1.1942 NaN 1 0 Median 1.4964 1.5641 NaN 1 0 Median 1.4337 1.1767 11.933 3 0 Median 19919000 8986600 10932000 9560500 4486700 5073800 7905300 3461800 4443500 0 0 0 232540 97264 135280 1361000 568900 792090 859210 371980 487220 30980 3544 32561 161980;161981;161982;161983;161984;161985;161986 162991;162992;162993;162994 162992 4 SLVSKGTLVQTK YDVEKNNSRIKLGLKSLVSKGTLVQTKGTG GLKSLVSKGTLVQTKGTGASGSFKLNKKAA K S L T K G 0 0 0 0 0 1 0 1 0 0 2 2 0 0 0 2 2 0 0 2 0 0 12 1 1259.7449 P10412;Q02539;P16401;P16402;P16403 P16402 87 98 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 1.7122E-06 139.86 By MS/MS By matching By MS/MS By MS/MS 2 1 7 3 0.93772 0.99723 16.701 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83347 0.8758 3.0052 2 0 Median 1.29 1.1328 NaN 1 0 Median 0.90725 0.9651 15.615 7 0 Median 1.2989 1.1024 17.023 3 0 Median 146570000 73486000 73080000 0 0 0 0 0 0 3505000 1912700 1592300 749260 374850 374410 127950000 65012000 62942000 14358000 6186600 8171100 30981 2028;1937;2029 32562 161987;161988;161989;161990;161991;161992;161993;161994;161995;161996;161997;161998;161999 162995;162996;162997;162998;162999;163000;163001;163002;163003;163004;163005;163006;163007 163005 13 SLVSTPAGPVNVLK NALKGPVKGSVTTLKSLVSTPAGPVNVLKG KSLVSTPAGPVNVLKGPVNVLTGPVNVLTT K S L L K G 1 0 1 0 0 0 0 1 0 0 2 1 0 0 2 2 1 0 0 3 0 0 14 0 1380.7977 Q96T58 Q96T58 2681 2694 SPEN Msx2-interacting protein yes yes 2 6.6868E-06 93.096 By MS/MS By matching By MS/MS By matching 1 3 1 2 0.77694 0.77539 11.546 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74435 0.79475 NaN 1 0 Median 0.86724 0.78146 13.201 3 0 Median 0.74094 0.77539 NaN 1 0 Median 0.79777 0.69178 12.427 2 0 Median 26112000 14445000 11668000 0 0 0 0 0 0 17480000 9567800 7912500 1041900 562060 479860 7001800 3988100 3013700 588240 326600 261640 30982 3741 32563 162000;162001;162002;162003;162004;162005;162006 163008;163009;163010;163011 163009 4 SLVVSPHEDMR CQRIVEDWQKILMVRSLVVSPHEDMRTWLK LMVRSLVVSPHEDMRTWLKYASLCGKSGRL R S L M R T 0 1 0 1 0 0 1 0 1 0 1 0 1 0 1 2 0 0 0 2 0 0 11 0 1268.6183 P42345 P42345 1641 1651 MTOR Serine/threonine-protein kinase mTOR yes yes 3 0.0068121 48.004 By MS/MS 1 0.78252 0.77828 NaN 1 Median 0.78252 0.77828 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2432300 1282100 1150200 2432300 1282100 1150200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30983 2310 32564 162007 163012 163012 1 SLVWGPGLQAAVVLPVR LVAAGAPEVLVSAPRSLVWGPGLQAAVVLP VWGPGLQAAVVLPVRYFYLQAVNSEGQNLT R S L V R Y 2 1 0 0 0 1 0 2 0 0 3 0 0 0 2 1 0 1 0 4 0 0 17 0 1761.0301 Q7Z4H8 Q7Z4H8 32 48 KDELC2 KDEL motif-containing protein 2 yes yes 2 1.3637E-13 147.37 By MS/MS By MS/MS By matching 1 1 1 0.60665 0.58797 26.854 3 Median 0.60665 0.58364 NaN 1 0 Median 1.0749 0.93268 NaN 1 0 Median 0.57546 0.58797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10240000 5862300 4377200 6842900 4121000 2721900 3003100 1488100 1515000 393480 253220 140260 0 0 0 0 0 0 0 0 0 30984 3246 32565 162008;162009;162010 163013;163014;163015;163016 163014 4 SLWFPSDLAELR PRGRRLGSTEEAGGRSLWFPSDLAELRELS GGRSLWFPSDLAELRELSEVLREYRKEHQA R S L L R E 1 1 0 1 0 0 1 0 0 0 3 0 0 1 1 2 0 1 0 0 0 0 12 0 1432.7351 Q96HV5;H7BXL1;F8WDE2 Q96HV5 41 52 TMEM41A Transmembrane protein 41A yes no 2 0.015708 34.721 By MS/MS By matching 2 3 1.1956 1.0505 7.7697 5 Median 1.0443 1.016 13.928 2 0 Median 1.2375 1.0505 3.3083 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3451100 1608400 1842700 2956300 1451300 1505000 494710 157080 337630 0 0 0 0 0 0 0 0 0 0 0 0 30985 3670 32566 162011;162012;162013;162014;162015 163017;163018;163019 163018 3 SLWQQPSVGDILR PAAVEHHKTCRSLGRSLWQQPSVGDILRLL GRSLWQQPSVGDILRLLDRDRMMQTILHFP R S L L R L 0 1 0 1 0 2 0 1 0 1 2 0 0 0 1 2 0 1 0 1 0 0 13 0 1497.794 O60287 O60287 1583 1595 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 6.9904E-06 91.584 By MS/MS By MS/MS By matching 2 1 1 0.85126 0.8531 82.316 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.16584 0.2095 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85126 0.88994 NaN 1 0 Median 1.0059 0.8531 NaN 1 0 Median 3977400 2509200 1468200 0 0 0 0 0 0 2373800 1623200 750590 0 0 0 1510800 838030 672780 92811 47999 44811 30986 1610 32567 162016;162017;162018;162019 163020;163021;163022 163020 3 SLYAENLPGNVGEFTAYR KGDHEEFNQCQTQLKSLYAENLPGNVGEFT AENLPGNVGEFTAYRILYYIFTKNSGDITT K S L Y R I 2 1 2 0 0 0 2 2 0 0 2 0 0 1 1 1 1 0 2 1 0 0 18 0 1999.964 C9JMY0;A0A087WUE4;Q96PV6;A0A0G2JNN3 C9JMY0 612 629 LENG8 Leukocyte receptor cluster member 8 yes no 2 0.0015036 35.737 By MS/MS 1 0.65093 0.69621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65093 0.69621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4327000 2598300 1728600 0 0 0 0 0 0 4327000 2598300 1728600 0 0 0 0 0 0 0 0 0 30987 30 32568 162020 163023;163024 163023 2 SLYASSPGGVYATR RTYSLGSALRPSTSRSLYASSPGGVYATRS RSLYASSPGGVYATRSSAVRLRSSVPGVRL R S L T R S 2 1 0 0 0 0 0 2 0 0 1 0 0 0 1 3 1 0 2 1 0 0 14 0 1427.7045 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 51 64 VIM Vimentin yes no 2 2.5019E-16 184.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 4 9 7 1.0004 0.98187 22.364 29 Median 0.85588 0.79123 5.1082 3 0 Median 1.2369 1.0352 3.4384 3 0 Median 0.96386 0.94614 8.4946 4 0 Median 1.0839 0.93033 7.8846 3 1 Median 1.076 1.0905 16.58 9 2 Median 0.88051 0.70959 13.203 7 0 Median 1853300000 930000000 923290000 329090000 172260000 156830000 90788000 40590000 50198000 191360000 94351000 97005000 100950000 47959000 52987000 721160000 351090000 370080000 419940000 223750000 196190000 30988 1907 32569 162021;162022;162023;162024;162025;162026;162027;162028;162029;162030;162031;162032;162033;162034;162035;162036;162037;162038;162039;162040;162041;162042;162043;162044;162045;162046;162047;162048;162049;162050;162051;162052 163025;163026;163027;163028;163029;163030;163031;163032;163033;163034;163035;163036;163037;163038;163039;163040;163041;163042;163043;163044;163045;163046;163047;163048;163049;163050;163051;163052;163053;163054;163055;163056;163057;163058;163059;163060;163061;163062;163063;163064;163065;163066;163067;163068;163069;163070;163071;163072;163073;163074;163075;163076;163077;163078;163079;163080 163036 56 SLYDDLGVETSDSK ______________________________ MSLYDDLGVETSDSKTEGWSKNFKLLQSQL M S L S K T 0 0 0 3 0 0 1 1 0 0 2 1 0 0 0 3 1 0 1 1 0 0 14 0 1527.694 Q96I25;Q5W010;Q5W011 Q96I25 2 15 RBM17 Splicing factor 45 yes no 2 0.0018211 46.706 By MS/MS 1 1.0081 0.99687 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0081 0.99687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676100 1726900 1949100 0 0 0 0 0 0 3676100 1726900 1949100 0 0 0 0 0 0 0 0 0 30989 3674 32570 162053 163081 163081 1 SLYDEVAAQGEVVR QNISSNSSASILESKSLYDEVAAQGEVVRK KSLYDEVAAQGEVVRKLKAEKSPKAKINEA K S L V R K 2 1 0 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 3 0 0 14 0 1534.7627 P07814;V9GYZ6 P07814 825 838 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 4.1375E-07 116.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 1.1316 0.99344 16.865 10 Median 0.98012 0.93291 21.774 2 0 Median 1.2928 1.1051 16.801 2 0 Median 0.85113 0.94098 36.081 2 1 Median 1.1803 1.0333 3.8284 2 0 Median 0.8669 0.91066 NaN 1 0 Median 1.1365 0.94865 NaN 1 0 Median 77468000 44344000 33123000 54727000 33555000 21172000 10530000 4762700 5766800 7309200 3661100 3648100 1485300 683740 801520 3132100 1570200 1561900 284620 111670 172950 30990 1892 32571 162054;162055;162056;162057;162058;162059;162060;162061;162062;162063 163082;163083;163084;163085;163086;163087;163088 163082 7 SLYDEVAAQGEVVRK QNISSNSSASILESKSLYDEVAAQGEVVRK SLYDEVAAQGEVVRKLKAEKSPKAKINEAV K S L R K L 2 1 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 3 0 0 15 1 1662.8577 P07814;V9GYZ6 P07814 825 839 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 4.7838E-07 87.713 By MS/MS 1 2.1593 2.1566 NaN 1 Median 2.1593 2.1566 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31247000 9004600 22242000 31247000 9004600 22242000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30991 1892 32572 162064 163089 163089 1 SLYESFVSSSDR ADDDLQESSRRPQRKSLYESFVSSSDRLRE QRKSLYESFVSSSDRLRELGPDGEEAEGPG K S L D R L 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 5 0 0 1 1 0 0 12 0 1375.6256 P18615;A0A0A0MT02;A2ABK4 P18615 131 142 NELFE Negative elongation factor E yes no 2 0.00067076 91.549 By matching By MS/MS By MS/MS 1 1 2 1.2445 1.1601 37.531 4 Median 1.0281 1.0247 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82259 0.81886 NaN 1 1 Median 1.8693 1.6071 28.536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10244000 5833000 4411300 2084900 1079700 1005300 0 0 0 6990200 4290400 2699800 1169100 462880 706230 0 0 0 0 0 0 30992 2059 32573 162065;162066;162067;162068 163090;163091 163090 2 SLYGLGGSKR GGLGGACGGAGFGSRSLYGLGGSKRISIGG GFGSRSLYGLGGSKRISIGGGSCAISGGYG R S L K R I 0 1 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1036.5665 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 60 69 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.020569 50.805 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.16193 0.15072 28.855 3 Median 0.16193 0.15878 NaN 1 1 Median 0.17071 0.15072 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10587 0.094044 NaN 1 1 Median 9329000 8873300 455690 2327100 2217500 109640 1386900 1137600 249360 4339200 4339200 0 0 0 0 0 0 0 1275800 1179100 96682 + 30993 741;748;766 32574 162069;162070;162071;162072;162073 163092;163093;163094;163095;163096 163096 5 SLYHDISGDTSGDYR DLLDIRSEYKRMYGKSLYHDISGDTSGDYR SLYHDISGDTSGDYRKILLKICGGND____ K S L Y R K 0 1 0 3 0 0 0 2 1 1 1 0 0 0 0 3 1 0 2 0 0 0 15 0 1684.7329 P50995 P50995 480 494 ANXA11 Annexin A11 yes yes 2;3 0.00020782 46.318 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.407 1.1878 22.421 4 Median 0.77485 0.77304 NaN 1 0 Median 1.431 1.2479 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3833 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4634 1.1892 NaN 1 0 Median 7822100 3387900 4434200 2978900 1323200 1655800 989290 394410 594890 0 0 0 3350800 1423800 1927000 0 0 0 503030 246510 256520 30994 2425 32575 162074;162075;162076;162077 163097;163098 163098 2 SLYHDISGDTSGDYRK DLLDIRSEYKRMYGKSLYHDISGDTSGDYR LYHDISGDTSGDYRKILLKICGGND_____ K S L R K I 0 1 0 3 0 0 0 2 1 1 1 1 0 0 0 3 1 0 2 0 0 0 16 1 1812.8279 P50995 P50995 480 495 ANXA11 Annexin A11 yes yes 2;3;4 2.7073E-10 100.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 4 2 2 1.4423 1.405 43.249 16 Median 1.023 1.0202 12.876 3 0 Median 1.4632 1.3354 2.1447 2 1 Median 1.3884 1.538 1.018 3 0 Median 1.4507 1.3613 26.621 4 0 Median 3.6629 3.7823 27.363 2 1 Median 1.5938 1.4443 14.503 2 0 Median 111140000 48771000 62370000 52728000 27298000 25430000 15520000 6574100 8946200 9418300 3794700 5623700 16019000 6263900 9755500 10846000 2088600 8757800 6607700 2751500 3856200 30995 2425 32576 162078;162079;162080;162081;162082;162083;162084;162085;162086;162087;162088;162089;162090;162091;162092;162093 163099;163100;163101;163102;163103;163104;163105;163106;163107;163108;163109;163110;163111 163107 12 SLYHSVEWRPAEEPR DNTSTVLREWLVAVKSLYHSVEWRPAEEPR SLYHSVEWRPAEEPRSYPDEEGPKHWSDSR K S L P R S 1 2 0 0 0 0 3 0 1 0 1 0 0 0 2 2 0 1 1 1 0 0 15 1 1854.9013 Q8NBJ5;M0QYH0 Q8NBJ5 110 124 COLGALT1 Procollagen galactosyltransferase 1 yes no 3 0.00037286 42.317 By matching By MS/MS 1 1 0.62514 0.63745 53.884 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39025 0.43549 NaN 1 0 Median 1.0014 0.93308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7082300 4497100 2585200 0 0 0 0 0 0 5668400 3808900 1859600 1413800 688200 725650 0 0 0 0 0 0 30996 3404 32577 162094;162095 163112;163113 163113 2 SLYIEVR GDEGLDITQDMKPPKSLYIEVRCLKDYGEF TQDMKPPKSLYIEVRCLKDYGEFEVDDGTS K S L V R C 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 7 0 878.48617 Q14691 Q14691 145 151 GINS1 DNA replication complex GINS protein PSF1 yes yes 2 0.031276 49.358 By MS/MS 1 1.098 1.0381 NaN 1 Median 1.098 1.0381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6612400 3248500 3363900 6612400 3248500 3363900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 30997 2892 32578 162096 163114 163114 1 SLYNLGGSK VSLAGACGVGGYGSRSLYNLGGSKRISIST GGYGSRSLYNLGGSKRISISTSGGSFRNRF R S L S K R 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 937.4869 CON__P13647;P13647;F8VV57 CON__P13647 64 72 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.027065 51.346 By MS/MS By MS/MS 1 1 0.17759 0.1562 4.1539 2 Median NaN NaN NaN 0 0 Median 0.17875 0.16085 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.17644 0.15167 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1274100 1049600 224530 0 0 0 554780 421030 133750 0 0 0 719350 628580 90774 0 0 0 0 0 0 + 30998 757 32579 162097;162098 163115;163116 163116 2 SLYNLGGSKR VSLAGACGVGGYGSRSLYNLGGSKRISIST GYGSRSLYNLGGSKRISISTSGGSFRNRFG R S L K R I 0 1 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1093.588 CON__P13647;P13647;F8VV57 CON__P13647 64 73 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00082473 89.698 By MS/MS By MS/MS By MS/MS 3 2 1 0.046087 0.045219 147.25 3 Median 0.021716 0.020379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.046087 0.045219 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.39812 0.35365 NaN 1 1 Median 10460000 9721200 738610 4957300 4909600 47681 0 0 0 0 0 0 2990400 2946100 44331 0 0 0 2512100 1865500 646600 + 30999 757 32580 162099;162100;162101;162102;162103;162104 163117;163118;163119;163120;163121;163122 163117 6 SLYPLTFIQVK VGAALDILCPSGPIKSLYPLTFIQVKQHYG GPIKSLYPLTFIQVKQHYGFVLYRTTLPQD K S L V K Q 0 0 0 0 0 1 0 0 0 1 2 1 0 1 1 1 1 0 1 1 0 0 11 0 1307.7489 E7EQ29;P16278 E7EQ29 269 279 GLB1 Beta-galactosidase yes no 2 0.011618 38.086 By MS/MS By MS/MS By matching 1 1 1 0.88896 0.82756 13.308 3 Plateau 0.88896 0.85153 NaN 1 0 Median 0.86238 0.74225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67622 0.65257 NaN 1 0 Median NaN NaN NaN 0 0 Median 8593400 4259200 4334200 4832200 2146700 2685500 2945900 1575200 1370800 0 0 0 0 0 0 815270 537350 277920 0 0 0 31000 874 32581 162105;162106;162107 163123;163124 163124 2 SLYQSAGVAPESFEYIEAHGTGTK GVTFPSGDIQEQLIRSLYQSAGVAPESFEY PESFEYIEAHGTGTKVGDPQELNGITRALC R S L T K V 3 0 0 0 0 1 3 3 1 1 1 1 0 1 1 3 2 0 2 1 0 0 24 0 2541.2023 P49327;A0A0U1RQF0 P49327 275 298 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 7.205E-28 96.903 By MS/MS By MS/MS By MS/MS 5 2 1 0.82398 0.77501 21.234 8 Median 0.83015 0.80397 13.023 5 1 Median 0.66712 0.57393 33.939 2 1 Median 0.70207 0.77511 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 254820000 137150000 117670000 229860000 122690000 107170000 14253000 8755300 5497600 10713000 5708300 5004400 0 0 0 0 0 0 0 0 0 31001 2377 32582 162108;162109;162110;162111;162112;162113;162114;162115 163125;163126;163127;163128;163129;163130;163131;163132;163133;163134;163135 163125 11 SLYSDHELR QEEMASLLQQIEIERSLYSDHELRALDENQ QIEIERSLYSDHELRALDENQRLAKKKADL R S L L R A 0 1 0 1 0 0 1 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1118.5356 Q9H2W6;A0A087WT90 Q9H2W6 82 90 MRPL46 39S ribosomal protein L46, mitochondrial yes no 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0556 1.0144 21.066 5 Median 0.97794 0.92966 8.9424 2 0 Median 1.6397 1.3939 NaN 1 1 Median 1.0556 1.0144 NaN 1 0 Median 1.6668 1.3777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17559000 8222100 9337000 5947900 2948000 2999900 1462500 582290 880220 8926400 4366300 4560000 1222300 325460 896800 0 0 0 0 0 0 31002 3948 32583 162116;162117;162118;162119;162120 163136;163137;163138;163139;163140;163141;163142;163143 163141 8 SLYSEKEVFIR EFQAETKKLLDIVARSLYSEKEVFIRELIS IVARSLYSEKEVFIRELISNASDALEKLRH R S L I R E 0 1 0 0 0 0 2 0 0 1 1 1 0 1 0 2 0 0 1 1 0 0 11 1 1369.7242 Q12931 Q12931 104 114 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2;3 4.5875E-05 120.99 By MS/MS By matching 3 1 1.2334 1.2509 32.148 4 Median 1.2298 1.2393 9.7559 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9905 2.205 NaN 1 0 Median NaN NaN NaN 0 0 Median 50433000 22961000 27472000 48278000 22402000 25876000 0 0 0 0 0 0 0 0 0 2154900 558960 1595900 0 0 0 31003 2771 32584 162121;162122;162123;162124 163144;163145;163146;163147 163145 4 SLYSMIK DMLDIREIFRTKYEKSLYSMIKNDTSGEYK IFRTKYEKSLYSMIKNDTSGEYKKTLLKLS K S L I K N 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 0 7 0 840.44153 E5RK69;P08133 P08133 300 306 ANXA6 Annexin;Annexin A6 no no 2 0.017757 64.803 By MS/MS By matching 2 1 1.417 1.316 13.817 3 Median 1.2554 1.1722 16.362 2 0 Median 1.5868 1.3361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25248000 10899000 14350000 17893000 8017200 9875800 7355400 2881500 4473900 0 0 0 0 0 0 0 0 0 0 0 0 31004 1898;854 32585 162125;162126;162127 163148;163149;163150;163151 163150 4 SLYVAEYHSEPVEDEKP QLGTEIKPIPSNIDKSLYVAEYHSEPVEDE YVAEYHSEPVEDEKP_______________ K S L K P - 1 0 0 1 0 0 4 0 1 0 1 1 0 0 2 2 0 0 2 2 0 0 17 1 1990.916 P26196 P26196 467 483 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2;3 0.011854 24.853 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.95599 0.82515 27.499 6 Median 1.2467 1.2024 NaN 1 0 Median 0.96452 0.8402 NaN 1 0 Median 0.59671 0.58032 6.27 2 0 Median 0.9603 0.82515 1.6077 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51791000 29481000 22310000 2411100 945880 1465200 1271700 640370 631340 38666000 23271000 15395000 9442200 4623900 4818200 0 0 0 0 0 0 31005 2140 32586 162128;162129;162130;162131;162132;162133 163152;163153;163154;163155;163156 163154 5 SLYYYIQQDTK DMLKIRSEFKRKYGKSLYYYIQQDTKGDYQ KYGKSLYYYIQQDTKGDYQKALLYLCGGDD K S L T K G 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 1 0 3 0 0 0 11 0 1420.6874 P07355;A6NMY6 P07355 314 324 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 8.9653E-07 166.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 3 3 1 1 1.228 1.0646 31.743 12 Median 1.2145 1.105 4.7085 2 0 Median 0.84674 0.7866 42.233 2 0 Median 1.2468 1.2065 42.011 3 0 Plateau 1.2435 1.0726 16.807 3 0 Plateau 1.8184 1.8201 NaN 1 0 Median 1.2686 1.0336 NaN 1 0 Median 665340000 302840000 362500000 184370000 91556000 92817000 46976000 20774000 26203000 290210000 127740000 162470000 138100000 60608000 77489000 1084500 298650 785860 4596900 1860900 2736000 31006 1885 32587 162134;162135;162136;162137;162138;162139;162140;162141;162142;162143;162144;162145;162146 163157;163158;163159;163160;163161;163162;163163;163164;163165;163166;163167;163168;163169;163170;163171 163163 15 SLYYYIQQDTKGDYQK DMLKIRSEFKRKYGKSLYYYIQQDTKGDYQ LYYYIQQDTKGDYQKALLYLCGGDD_____ K S L Q K A 0 0 0 2 0 3 0 1 0 1 1 2 0 0 0 1 1 0 4 0 0 0 16 1 2011.9527 P07355;A6NMY6 P07355 314 329 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 5.4394E-19 184.03 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 3 3 3 2 1 1.253 1.1747 9.0919 17 Median 1.2061 1.1579 6.1153 5 0 Median 1.3644 1.2283 10.738 3 0 Plateau 1.3369 1.397 11.989 3 0 Plateau 1.2936 1.1359 2.6148 3 0 Median 1.2885 1.3646 5.287 2 0 Median 1.3273 1.1333 NaN 1 0 Median 394220000 170460000 223760000 257790000 111410000 146380000 18744000 7514200 11230000 47172000 20770000 26402000 36801000 15594000 21206000 33000000 14813000 18188000 712070 350400 361670 31007 1885 32588 162147;162148;162149;162150;162151;162152;162153;162154;162155;162156;162157;162158;162159;162160;162161;162162;162163 163172;163173;163174;163175;163176;163177;163178;163179;163180;163181;163182;163183;163184;163185;163186;163187;163188;163189;163190;163191;163192;163193;163194;163195 163185 24 SMAASGNLGHTPFVDEL ADIINAAKKFVSGQKSMAASGNLGHTPFVD AASGNLGHTPFVDEL_______________ K S M E L - 2 0 1 1 0 0 1 2 1 0 2 0 1 1 1 2 1 0 0 1 0 0 17 0 1744.809 P22695 P22695 437 453 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 2 0.05904 32.062 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3662400 0 0 0 0 0 0 0 0 3662400 0 0 0 0 0 0 0 0 0 0 0 31008 2105 32589 162164 163196 163196 1 SMAEDTINAAVK SGLITIAGGKWTTYRSMAEDTINAAVKTHN TYRSMAEDTINAAVKTHNLKAGPSRTVGLF R S M V K T 3 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 0 1 0 0 12 0 1248.602 P43304 P43304 442 453 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial yes yes 2 0.00015076 87.913 By MS/MS 1 0.95761 0.87729 NaN 1 Median 0.95761 0.87729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8035300 3812700 4222700 8035300 3812700 4222700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31009 2325 32590 162165 163197 163197 1 SMANPPAAVK NAVKSIKKQHLVEVRSMANPPAAVKLALES LVEVRSMANPPAAVKLALESICLLLGESTT R S M V K L 3 0 1 0 0 0 0 0 0 0 0 1 1 0 2 1 0 0 0 1 0 0 10 0 984.50625 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3309 3318 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.011836 42.109 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.77985 0.75988 15.469 4 Median 0.5954 0.5903 NaN 1 0 Median 0.8224 0.71273 NaN 1 0 Median 0.73951 0.81015 NaN 1 0 Median 0.88625 0.82598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4673300 2527400 2145800 1357800 856090 501680 677320 211850 465470 1938700 1097100 841640 699480 362430 337040 0 0 0 0 0 0 31010 2865 32591 162166;162167;162168;162169 163198;163199 163198 2 SMDAETYVEGQR CDLTNMDGVVTVTPRSMDAETYVEGQRISE TPRSMDAETYVEGQRISETTMLQSGMKVQF R S M Q R I 1 1 0 1 0 1 2 1 0 0 0 0 1 0 0 1 1 0 1 1 0 0 12 0 1384.5929 J3KN01;P55196;Q5TIG5;A8MQ02;H0Y7R8 J3KN01 465 476 MLLT4 Afadin yes no 2 0.00087993 88.681 By MS/MS By MS/MS 1 1 1.101 1.0602 14.963 2 Median NaN NaN NaN 0 0 Median 1.1421 0.95379 NaN 1 1 Median 1.0614 1.1786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3388900 1528000 1860800 0 0 0 1191800 531510 660320 2197000 996530 1200500 0 0 0 0 0 0 0 0 0 31011 1300 32592 162170;162171 163200;163201 163201 1 SMDEFTASTPADLGEAGR CLSVCNVTIQDTMERSMDEFTASTPADLGE EFTASTPADLGEAGRLRKKADIATSKTTTR R S M G R L 3 1 0 2 0 0 2 2 0 0 1 0 1 1 1 2 2 0 0 0 0 0 18 0 1853.8102 Q7Z5K2 Q7Z5K2 380 397 WAPAL Wings apart-like protein homolog yes yes 2 1.7487E-12 134.98 By MS/MS By matching By matching 2 3 1 0.88578 0.84129 11.57 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73622 0.80954 5.8484 2 0 Median 0.96906 0.83888 12.379 3 0 Median NaN NaN NaN 0 0 Median 1.1538 0.97726 NaN 1 0 Median 29876000 16827000 13049000 0 0 0 0 0 0 28059000 15896000 12163000 1657300 857670 799600 0 0 0 159470 72845 86621 31012 3249 32593;32594 162172;162173;162174;162175;162176;162177 163202;163203;163204;163205 163205 1694 4 SMDFEEAER GQGPKYVKIFINLPRSMDFEEAERSEPTQA FINLPRSMDFEEAERSEPTQALELTEDDIK R S M E R S 1 1 0 1 0 0 3 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1112.4444 O43396;K7ER96 O43396 203 211 TXNL1 Thioredoxin-like protein 1 yes no 2 0.0017097 78.516 By matching By MS/MS By matching 1 1 1 1.1888 1.0039 25.631 3 Plateau 1.066 1.0234 NaN 1 0 Median 1.2037 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7751 0.65044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8278700 3527100 4751600 3012300 1204800 1807500 4647000 1986700 2660400 0 0 0 619380 335610 283770 0 0 0 0 0 0 31013 1570 32595 162178;162179;162180 163206 163206 1 SMDHFDDIGPSVVMASPGMMQSGLSR NINNPFVFKHISNLKSMDHFDDIGPSVVMA VVMASPGMMQSGLSRELFESWCTDKRNGVI K S M S R E 1 1 0 3 0 1 0 3 1 1 1 0 4 1 2 5 0 0 0 2 0 0 26 0 2751.2125 Q9UKF6;G5E9W3 Q9UKF6 313 338 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3 2.8444E-19 63.122 By MS/MS 1 0.70385 0.74395 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70385 0.74395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3474300 2047000 1427300 0 0 0 0 0 0 3474300 2047000 1427300 0 0 0 0 0 0 0 0 0 31014 4309 32596 162181 163207;163208 163208 2 SMDLSEYIIR KEFQEKHKKEVGKLKSMDLSEYIIRGDDEE VGKLKSMDLSEYIIRGDDEEWNEVLNKAGP K S M I R G 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 0 10 0 1225.6013 Q9H0A0;A0A087WV29 Q9H0A0 957 966 NAT10 N-acetyltransferase 10 yes no 2 0.0057065 50.04 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1.2331 1.1926 11.965 6 Median NaN NaN NaN 0 0 Median 1.4041 1.2385 NaN 1 0 Median 0.99282 1.0724 13.276 2 0 Median 1.3944 1.2074 NaN 1 0 Median 1.2582 1.3376 NaN 1 0 Median 1.2084 1.0237 NaN 1 0 Median 7167600 3591100 3576500 0 0 0 957470 387000 570480 4888400 2581600 2306800 398650 178880 219770 838720 396990 441730 84421 46682 37739 31015 3921 32597 162182;162183;162184;162185;162186;162187 163209;163210 163210 2 SMDNMTVR LTDRSRLGCQICLTKSMDNMTVRVPETVAD CQICLTKSMDNMTVRVPETVADARQSIDVG K S M V R V 0 1 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 8 0 952.41064 P10109 P10109 159 166 FDX1 Adrenodoxin, mitochondrial yes yes 2 0.0082924 63.48 By MS/MS 1 1.2849 1.2567 NaN 1 Median 1.2849 1.2567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1704200 837890 866340 1704200 837890 866340 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31016 1933 32598 162188 163211;163212 163212 2 SMDSYLNQSYGMDNHSGGGGGSR GMDRDYGHGSYGGQRSMDSYLNQSYGMDNH SYGMDNHSGGGGGSRFGPYESYDSRSSLGG R S M S R F 0 1 2 2 0 1 0 6 1 0 1 0 2 0 0 5 0 0 2 0 0 0 23 0 2375.9495 Q5BKZ1 Q5BKZ1 48 70 ZNF326 DBIRD complex subunit ZNF326 yes yes 3 5.2761E-35 128.01 By matching By MS/MS By matching By MS/MS By matching 1 1 3 7 1 1.0971 1.0922 19.433 13 Median NaN NaN NaN 0 0 Median 1.5283 1.354 NaN 1 0 Median 1.063 1.0835 NaN 1 0 Median 1.2793 1.0742 21.024 3 0 Median 1.0713 1.1017 20.178 7 0 Median 1.5368 1.266 NaN 1 0 Median 67037000 31860000 35177000 0 0 0 477950 209890 268060 10428000 4832400 5595700 3021700 1252500 1769200 52677000 25406000 27271000 432260 159370 272890 31017 3042 32599;32600 162189;162190;162191;162192;162193;162194;162195;162196;162197;162198;162199;162200;162201 163213;163214;163215;163216;163217;163218 163216 1658;1659 6 SMEAEMIQLQEELAAAER EEILAQAKENEKKLKSMEAEMIQLQEELAA AEMIQLQEELAAAERAKRQAQQERDELADE K S M E R A 4 1 0 0 0 2 5 0 0 1 2 0 2 0 0 1 0 0 0 0 0 0 18 0 2047.9554 P35579 P35579 1677 1694 MYH9 Myosin-9 yes yes 2;3 1.5904E-12 139.89 By MS/MS By MS/MS By matching By matching By matching 7 6 1 1 1 1.0668 0.95595 20.043 16 Median 1.2272 1.1518 17.698 7 1 Median 1.0132 0.86978 5.3579 6 0 Median 0.86004 0.9588 NaN 1 0 Median 0.96665 0.83949 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1222 0.95219 NaN 1 0 Median 56748000 25478000 31271000 29547000 12654000 16893000 26716000 12580000 14136000 211300 109320 101970 177530 86917 90610 0 0 0 96847 47070 49777 31018 2244 32601;32602;32603 162202;162203;162204;162205;162206;162207;162208;162209;162210;162211;162212;162213;162214;162215;162216;162217 163219;163220;163221;163222;163223;163224;163225;163226;163227 163227 996;997 9 SMEDFVTWVDSSK VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK TRSMEDFVTWVDSSKIKRHVLEYNEERDDF R S M S K I 0 0 0 2 0 0 1 0 0 0 0 1 1 1 0 3 1 1 0 2 0 0 13 0 1529.6708 Q9NV31 Q9NV31 153 165 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00059441 69.786 By matching By MS/MS By matching 1 1 1 1.302 1.2835 17.129 3 Median NaN NaN NaN 0 0 Median 1.6804 1.4642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1449 1.2835 NaN 1 0 Median 1.302 1.0424 NaN 1 0 Median 7598200 3372300 4226000 0 0 0 128830 47862 80968 0 0 0 0 0 0 7186500 3211900 3974600 282930 112500 170430 31019 4122 32604 162218;162219;162220 163228;163229 163229 2 SMEEQLLVVER APESYEELRSLLLGRSMEEQLLVVERIQKC LLGRSMEEQLLVVERIQKCNHPSLAEGNKA R S M E R I 0 1 0 0 0 1 3 0 0 0 2 0 1 0 0 1 0 0 0 2 0 0 11 0 1331.6755 P78316;E9PFK5 P78316 443 453 NOP14 Nucleolar protein 14 yes no 2 0.00017015 112.75 By matching By MS/MS By MS/MS By matching 1 1 3 1 0.94374 0.9367 66.707 6 Median 3.6895 3.8672 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.08 1.1571 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.64815 0.67238 14.883 3 2 Median 1.3182 1.0548 NaN 1 0 Median 16299000 8724800 7574400 980590 292790 687790 0 0 0 2572100 1358900 1213200 0 0 0 12543000 7004300 5538900 203360 68766 134600 31020 2637 32605;32606 162221;162222;162223;162224;162225;162226 163230;163231;163232;163233 163231 1299 4 SMEFAPSEGAGTQDAAKPLEVLLLEK QADYEEVKKELNILKSMEFAPSEGAGTQDA TQDAAKPLEVLLLEKNRSLQSENAALRISN K S M E K N 4 0 0 1 0 1 4 2 0 0 4 2 1 1 2 2 1 0 0 1 0 0 26 1 2730.3786 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 374 399 CUX1 Protein CASP no no 3 0.0042338 23.913 By MS/MS By matching 3 1 0.75312 0.8611 7.022 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74612 0.85361 4.0108 3 0 Median 0.97576 0.95322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10762000 6043300 4718300 0 0 0 0 0 0 10647000 5982700 4664300 114640 60554 54083 0 0 0 0 0 0 31021 388;2847 32607 162227;162228;162229;162230 163234;163235;163236;163237 163234 4 SMEMLVEHQAHDILT KGMKDRLEFWCTDVKSMEMLVEHQAHDILT SMEMLVEHQAHDILT_______________ K S M L T - 1 0 0 1 0 1 2 0 2 1 2 0 2 0 0 1 1 0 0 1 0 0 15 0 1752.8175 Q9UNM6;A0A087WUL9;J3KNQ3;H0YD73 Q9UNM6 362 376 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.0035672 51.927 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4807300 0 0 4807300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31022 4345 32608 162231 163238 163238 1 SMENYYQESGR DKPDVRFVIHHSMSKSMENYYQESGRAGRD SMSKSMENYYQESGRAGRDDMKADCILYYG K S M G R A 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 2 0 0 2 0 0 0 11 0 1362.551 P46063 P46063 394 404 RECQL ATP-dependent DNA helicase Q1 yes yes 2 9.3469E-07 166.19 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.1024 0.98988 8.5253 7 Median 1.1024 1.0753 NaN 1 0 Median 1.2907 1.1175 NaN 1 0 Median 0.89183 0.92694 8.9913 2 0 Median 1.183 0.98988 5.6779 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47018000 23653000 23364000 4605900 2427900 2178000 5023800 2131800 2892000 29040000 15351000 13690000 8347700 3743200 4604500 0 0 0 0 0 0 31023 2337 32609;32610 162232;162233;162234;162235;162236;162237;162238 163239;163240;163241;163242;163243;163244;163245;163246;163247;163248;163249 163242 1067 11 SMEQLTSSLNEGENTHMIHQK EEVTQILEENSDLIRSMEQLTSSLNEGENT SSLNEGENTHMIHQKTQEKIWEFKGKLEQH R S M Q K T 0 0 2 0 0 2 3 1 2 1 2 1 2 0 0 3 2 0 0 0 0 0 21 0 2413.1002 Q7Z2Z2 Q7Z2Z2 775 795 EFTUD1 Elongation factor Tu GTP-binding domain-containing protein 1 yes yes 3 0.00079671 42.711 By MS/MS 1 1.2598 1.2258 NaN 1 Median 1.2598 1.2258 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6225900 2731400 3494600 6225900 2731400 3494600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31024 3238 32611 162239 163250 163250 1 SMEVKPAQASHTNYLLMR DEEDDLDEGVGGKRRSMEVKPAQASHTNYL VKPAQASHTNYLLMRGYYSPGIVSTRNLNP R S M M R G 2 1 1 0 0 1 1 0 1 0 2 1 2 0 1 2 1 0 1 1 0 0 18 1 2075.0292 Q12789 Q12789 1632 1649 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 1.2004E-13 152.94 By MS/MS 2 0.78384 0.93898 9.8423 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78384 0.93898 9.8423 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66196000 38262000 27934000 0 0 0 0 0 0 66196000 38262000 27934000 0 0 0 0 0 0 0 0 0 31025 2758 32612;32613 162240;162241 163251;163252;163253;163254 163254 1478 4 SMEVSTQLAR DKAFKHVFGKTLICRSMEVSTQLARAFTMD TLICRSMEVSTQLARAFTMDCITLEGDQVS R S M A R A 1 1 0 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 10 0 1120.5547 Q9UQE7 Q9UQE7 635 644 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.3566E-05 138.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 0.96362 0.97178 25.549 8 Median 0.81972 0.79262 NaN 1 0 Median 1.2265 1.0248 NaN 1 0 Median 0.88298 0.9708 NaN 1 1 Median 0.5684 0.48143 NaN 1 1 Median 0.96506 0.98449 1.693 2 0 Median 1.1091 0.90654 16.085 2 0 Median 88527000 41959000 46568000 4829900 2560500 2269400 11514000 4390200 7123700 14439000 7083500 7355500 11472000 7276300 4196000 31087000 13754000 17333000 15185000 6894700 8290300 31026 4362 32614 162242;162243;162244;162245;162246;162247;162248;162249 163255;163256;163257;163258;163259;163260;163261;163262;163263;163264;163265;163266 163258 12 SMFAGVPTMR GGLLLLLAESRSEGKSMFAGVPTMRESSPK RSEGKSMFAGVPTMRESSPKQYMQLGGRVL K S M M R E 1 1 0 0 0 0 0 1 0 0 0 0 2 1 1 1 1 0 0 1 0 0 10 0 1095.5205 Q5T8U5;O15260;B7Z1G8 Q5T8U5 140 149 SURF4 Surfeit locus protein 4 yes no 2 0.00039204 107.57 By MS/MS By MS/MS By MS/MS 6 7 2 1.0541 0.97062 16.892 14 Median 1.0539 0.98879 12.536 5 0 Median 1.0543 0.89275 15.983 7 0 Median 1.02 1.1014 8.8135 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 501950000 249060000 252880000 264790000 128660000 136120000 211440000 107770000 103670000 25727000 12633000 13094000 0 0 0 0 0 0 0 0 0 31027 1534 32615;32616 162250;162251;162252;162253;162254;162255;162256;162257;162258;162259;162260;162261;162262;162263;162264 163267;163268;163269;163270;163271;163272;163273;163274;163275;163276;163277;163278;163279;163280;163281;163282;163283;163284;163285;163286;163287;163288;163289;163290;163291;163292 163284 499;500 26 SMFSDQVLAHPSVK SPNYEEITKWYLGWKSMFSDQVLAHPSVKD KSMFSDQVLAHPSVKDKFNEALDIMNRAVS K S M V K D 1 0 0 1 0 1 0 0 1 0 1 1 1 1 1 3 0 0 0 2 0 0 14 0 1544.7657 Q9UBB9 Q9UBB9 688 701 TFIP11 Tuftelin-interacting protein 11 yes yes 3 0.004762 29.013 By matching By MS/MS By matching 1 1 1 1.0619 1.0417 13.238 3 Plateau NaN NaN NaN 0 0 Median 1.2464 1.0526 NaN 1 0 Median 0.90478 0.99761 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77294 0.81864 NaN 1 0 Median NaN NaN NaN 0 0 Median 11527000 6173500 5353500 0 0 0 4525700 2322500 2203200 4244800 2364600 1880200 0 0 0 2756500 1486400 1270100 0 0 0 31028 4235 32617 162265;162266;162267 163293 163293 1 SMFTQALNLDSTSVR LAMVMVTTVPLVCNKSMFTQALNLDSTSVR SMFTQALNLDSTSVRHTALSLISVILKRAL K S M V R H 1 1 1 1 0 1 0 0 0 0 2 0 1 1 0 3 2 0 0 1 0 0 15 0 1668.8141 O60287 O60287 438 452 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00014819 77.64 By MS/MS By matching 1 1 1.5318 1.5031 22.095 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1572 1.2857 NaN 1 0 Median 2.0276 1.7573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2634900 1220400 1414500 0 0 0 0 0 0 2512100 1165200 1346900 122800 55196 67603 0 0 0 0 0 0 31029 1610 32618 162268;162269 163294;163295 163295 2 SMGFIGHYLDQK YIDIGALNGIFVLGRSMGFIGHYLDQKRLK LGRSMGFIGHYLDQKRLKQGLYRHPWDDIS R S M Q K R 0 0 0 1 0 1 0 2 1 1 1 1 1 1 0 1 0 0 1 0 0 0 12 0 1394.6653 P53396 P53396 1066 1077 ACLY ATP-citrate synthase yes yes 2;3 0.0044038 64.73 By MS/MS By matching 2 1 1.2831 1.2398 5.1067 3 Median 1.2763 1.2416 0.21163 2 1 Median 1.2996 1.1366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21305000 9225900 12079000 18738000 8085900 10652000 2566400 1139900 1426500 0 0 0 0 0 0 0 0 0 0 0 0 31030 2467 32619 162270;162271;162272 163296;163297;163298 163298 3 SMGFIGHYLDQKR YIDIGALNGIFVLGRSMGFIGHYLDQKRLK GRSMGFIGHYLDQKRLKQGLYRHPWDDISY R S M K R L 0 1 0 1 0 1 0 2 1 1 1 1 1 1 0 1 0 0 1 0 0 0 13 1 1550.7664 P53396 P53396 1066 1078 ACLY ATP-citrate synthase yes yes 3 0.0002544 59.898 By MS/MS By matching By MS/MS 1 1 1 1.2698 1.3249 95.166 3 Plateau 1.2698 1.3249 NaN 1 0 Median 1.2147 1.1523 NaN 1 0 Median 0.21073 0.23876 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39385000 20227000 19158000 29968000 12979000 16989000 1922700 894270 1028400 7494500 6354500 1140000 0 0 0 0 0 0 0 0 0 31031 2467 32620 162273;162274;162275 163299;163300;163301 163300 3 SMGGAAIAPPTSLVEK DSDEDEDYERERRKRSMGGAAIAPPTSLVE MGGAAIAPPTSLVEKDKELPRDFPYEEDSR R S M E K D 3 0 0 0 0 0 1 2 0 1 1 1 1 0 2 2 1 0 0 1 0 0 16 0 1527.7967 Q96I25;Q5W010;Q5W011;H0Y6J6;Q5W012 Q96I25 169 184 RBM17 Splicing factor 45 yes no 2 0.00029512 48.659 By MS/MS By matching By matching 1 1 1 0.73591 0.71061 27.141 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73591 0.71061 NaN 1 0 Median 0.9634 0.84566 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60647 0.49662 NaN 1 0 Median 13797000 8434700 5362600 0 0 0 0 0 0 13179000 8048900 5130400 351740 211580 140160 0 0 0 266250 174230 92019 31032 3674 32621 162276;162277;162278 163302;163303 163302 2 SMGGAAIAPPTSLVEKDKELPR DSDEDEDYERERRKRSMGGAAIAPPTSLVE APPTSLVEKDKELPRDFPYEEDSRPRSQSS R S M P R D 3 1 0 1 0 0 2 2 0 1 2 2 1 0 3 2 1 0 0 1 0 0 22 2 2266.1991 Q96I25;Q5W010;Q5W011;H0Y6J6;Q5W012 Q96I25 169 190 RBM17 Splicing factor 45 yes no 3;4 9.8967E-13 78.413 By MS/MS 2 0.65923 0.75411 31.029 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65923 0.75411 31.029 2 0 Median NaN NaN NaN 0 0 Median 22388000 13390000 8998300 0 0 0 0 0 0 0 0 0 0 0 0 22388000 13390000 8998300 0 0 0 31033 3674 32622 162279;162280 163304;163305 163304 2 SMGLPTSDEQK TRSMVEKMMYDQRQKSMGLPTSDEQKKQEI QRQKSMGLPTSDEQKKQEILKKFMDQHPEM K S M Q K K 0 0 0 1 0 1 1 1 0 0 1 1 1 0 1 2 1 0 0 0 0 0 11 0 1191.5442 Q9Y266 Q9Y266 298 308 NUDC Nuclear migration protein nudC yes yes 2 0.00022785 73.985 By MS/MS By MS/MS 1 1 0.99773 0.89106 2.9489 2 Median 0.93433 0.87268 NaN 1 0 Median 1.0654 0.90984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12507000 6054800 6452100 5808400 2775400 3033000 6698500 3279400 3419100 0 0 0 0 0 0 0 0 0 0 0 0 31034 4376 32623 162281;162282 163306;163307;163308;163309 163307 4 SMGLPTSDEQKKQEILK TRSMVEKMMYDQRQKSMGLPTSDEQKKQEI GLPTSDEQKKQEILKKFMDQHPEMDFSKAK K S M L K K 0 0 0 1 0 2 2 1 0 1 2 3 1 0 1 2 1 0 0 0 0 0 17 2 1931.0034 Q9Y266 Q9Y266 298 314 NUDC Nuclear migration protein nudC yes yes 3 0.022695 18.58 By MS/MS 1 1.2191 1.2501 NaN 1 Median 1.2191 1.2501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9788300 4481400 5307000 9788300 4481400 5307000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31035 4376 32624 162283 163310;163311 163311 2 SMIASTAITVHYLDLSLNPSGEVTR RNATGDYKCSLIDKKSMIASTAITVHYLDL HYLDLSLNPSGEVTRQIGDALPVSCTISAS K S M T R Q 2 1 1 1 0 0 1 1 1 2 3 0 1 0 1 4 3 0 1 2 0 0 25 0 2674.3636 Q13740;F5GXJ9 Q13740 320 344 ALCAM CD166 antigen yes no 3 0.0078318 19.986 By MS/MS 1 1.0026 0.8801 NaN 1 Median NaN NaN NaN 0 0 Median 1.0026 0.8801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1533500 925920 607570 0 0 0 1533500 925920 607570 0 0 0 0 0 0 0 0 0 0 0 0 31036 2836 32625 162284 163312 163312 1 SMIEISR NAILREIQVQHPAAKSMIEISRTQDEEVGD QVQHPAAKSMIEISRTQDEEVGDGTTSVII K S M S R T 0 1 0 0 0 0 1 0 0 2 0 0 1 0 0 2 0 0 0 0 0 0 7 0 834.42694 P49368;B4DUR8;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;Q5SZX9 P49368 79 85 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00014109 151.17 By MS/MS By MS/MS 2 1 1.2126 1.0687 4.0429 3 Median 1.0791 1.1041 4.617 2 0 Median 1.2269 1.0595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74571000 32992000 41580000 42446000 18455000 23990000 32126000 14536000 17589000 0 0 0 0 0 0 0 0 0 0 0 0 31037 2379 32626 162285;162286;162287 163313;163314 163313 2 SMIEQLIK FYSVVVSTVSGNELKSMIEQLIKTTKDNHS VSGNELKSMIEQLIKTTKDNHSPEIQHGSL K S M I K T 0 0 0 0 0 1 1 0 0 2 1 1 1 0 0 1 0 0 0 0 0 0 8 0 960.5314 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 731 738 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0062263 72.138 By MS/MS By matching 1 2 1.0908 1.0539 18.577 3 Median 1.0908 1.0539 NaN 1 0 Median 1.277 1.1154 25.86 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11764000 5386300 6377700 8156800 3820000 4336800 3607200 1566300 2040800 0 0 0 0 0 0 0 0 0 0 0 0 31038 3116 32627 162288;162289;162290 163315;163316 163315 2 SMLAALIAAQATALNR SHLRVSFCAPGPPGRSMLAALIAAQATALN MLAALIAAQATALNRGKGLLPEPNILQLLN R S M N R G 6 1 1 0 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 16 0 1613.8923 A0A087WZ13;E9PAU2;Q8IY67 A0A087WZ13 305 320 RAVER1 Ribonucleoprotein PTB-binding 1 yes no 2 0.0071575 30.55 By MS/MS 1 0.63486 0.67441 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63486 0.67441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3057700 1878900 1178800 0 0 0 0 0 0 3057700 1878900 1178800 0 0 0 0 0 0 0 0 0 31039 90 32628 162291 163317;163318 163318 2 SMLALLLGR ARDKDQRSLDIDTAKSMLALLLGRTWPLFS DIDTAKSMLALLLGRTWPLFSVFYQYLEQS K S M G R T 1 1 0 0 0 0 0 1 0 0 4 0 1 0 0 1 0 0 0 0 0 0 9 0 972.57902 Q9BTE7;E9PM04;H0YCN4 Q9BTE7 164 172 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 2 0.0031588 67.032 By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1.2744 1.0405 12.986 10 Median NaN NaN NaN 0 0 Median 1.2667 1.061 16.148 3 0 Median 1.2937 1.2413 17.859 3 0 Median 1.2322 1.015 3.704 2 0 Median NaN NaN NaN 0 0 Median 1.295 1.0149 3.3311 2 0 Median 12989000 5866000 7123300 0 0 0 734160 340600 393560 9205500 4161300 5044200 1212200 502680 709520 0 0 0 1837400 861370 976020 31040 3826 32629;32630 162292;162293;162294;162295;162296;162297;162298;162299;162300;162301 163319;163320;163321;163322;163323 163323 1834 5 SMLESMLNR IAESPLWYSVIPMDRSMLESMLNRILAVRE VIPMDRSMLESMLNRILAVREIYEELGRPG R S M N R I 0 1 1 0 0 0 1 0 0 0 2 0 2 0 0 2 0 0 0 0 0 0 9 0 1079.5104 A6NHN7;A6NHB5;Q14202 A6NHN7 1252 1260 ZMYM3 Zinc finger MYM-type protein 3 yes no 2 0.017009 42.109 By MS/MS 1 1.0721 1.1714 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0721 1.1714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2086100 950640 1135500 0 0 0 0 0 0 2086100 950640 1135500 0 0 0 0 0 0 0 0 0 31041 516 32631 162302 163324 163324 1 SMLEVNYPMENGIVR EIKDLMVGDEASELRSMLEVNYPMENGIVR SMLEVNYPMENGIVRNWDDMKHLWDYTFGP R S M V R N 0 1 2 0 0 0 2 1 0 1 1 0 2 0 1 1 0 0 1 2 0 0 15 0 1750.8382 P61160;F5H6T1 P61160 66 80 ACTR2 Actin-related protein 2 yes no 2 2.5988E-19 135.66 By MS/MS By MS/MS By MS/MS By matching 3 1 4 3 0.94267 0.93783 15.388 11 Median 0.94267 0.93783 3.3562 3 1 Median 0.70278 0.61345 NaN 1 0 Median 0.89037 0.96831 7.7976 4 3 Median 1.2594 1.1116 10.535 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81292000 38863000 42429000 39097000 18711000 20386000 7458500 3174600 4283900 32241000 16063000 16178000 2495500 914990 1580500 0 0 0 0 0 0 31042 2546 32632;32633 162303;162304;162305;162306;162307;162308;162309;162310;162311;162312;162313 163325;163326;163327;163328;163329;163330;163331;163332;163333;163334;163335 163333 1224;1225 11 SMLLSAIGK SGRRYGLIGLNGIGKSMLLSAIGKREVPIP LNGIGKSMLLSAIGKREVPIPEHIDIYHLT K S M G K R 1 0 0 0 0 0 0 1 0 1 2 1 1 0 0 2 0 0 0 0 0 0 9 0 918.52084 Q9UG63;C9JHK9;C9JZV3 Q9UG63 125 133 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.0074886 51.346 By matching By matching By MS/MS By matching 1 1 1 1 1.1896 1.0966 24.791 4 Median 1.3285 1.2849 NaN 1 0 Median 1.0653 0.93589 NaN 1 0 Median 1.427 1.4995 NaN 1 0 Median 1.0455 0.89895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8802900 3701400 5101500 1775100 815960 959130 814210 390170 424030 5385600 2116800 3268900 827950 378510 449440 0 0 0 0 0 0 31043 4262 32634 162314;162315;162316;162317 163336;163337 163336 2 SMLMEQDPDVAVTVR LSDPENNIKKLKELRSMLMEQDPDVAVTVR SMLMEQDPDVAVTVRKLVIVSLMELFKDIT R S M V R K 1 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 1 0 0 3 0 0 15 0 1689.8066 Q8WTT2 Q8WTT2 241 255 NOC3L Nucleolar complex protein 3 homolog yes yes 2 4.5279E-06 87.363 By MS/MS By MS/MS By matching 1 1 1 0.96358 0.80517 13.293 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72889 0.782 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96358 0.99754 NaN 1 0 Median 0.97938 0.80517 NaN 1 0 Median 10554000 5443100 5110600 0 0 0 0 0 0 3520300 1926800 1593500 0 0 0 6491600 3248800 3242800 541750 267460 274280 31044 3484 32635 162318;162319;162320 163338;163339;163340 163340 3 SMLQATAEANNLAAVAGAR AYIKIYQGEELPHPKSMLQATAEANNLAAV ATAEANNLAAVAGARDTYCKSMEQVCGGDK K S M A R D 7 1 2 0 0 1 1 1 0 0 2 0 1 0 0 1 1 0 0 1 0 0 19 0 1857.9367 Q8NHH9;B5MCN0 Q8NHH9 373 391 ATL2 Atlastin-2 yes no 2 1.1187E-07 62.924 By MS/MS By matching 1 1 0.81396 0.76966 53.098 2 Median 1.1258 1.1204 NaN 1 0 Median 0.5885 0.52873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3092300 1573600 1518800 2905300 1456400 1448900 187020 117120 69908 0 0 0 0 0 0 0 0 0 0 0 0 31045 3444 32636 162321;162322 163341 163341 1 SMMGGGLAEIPGLSINFAK DFSCLPTFGVIIGQKSMMGGGLAEIPGLSI GGLAEIPGLSINFAKVLHGEQYLELYKPLP K S M A K V 2 0 1 0 0 0 1 4 0 2 2 1 2 1 1 2 0 0 0 0 0 0 19 0 1891.9536 A0A2R8YD50;P51659;E7EWE5;E7ER27;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 385 403 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 1.1236E-07 65.563 By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1.1112 1.0788 11.612 7 Median 0.89308 0.88 NaN 1 0 Median 1.2225 1.0614 11.868 2 0 Median 0.96969 1.054 3.2814 2 0 Median 1.3482 1.1703 10.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12390000 5702500 6687100 2021700 994270 1027400 4923500 2345700 2577900 2289200 1120700 1168600 3155200 1241900 1913300 0 0 0 0 0 0 31046 393 32637 162323;162324;162325;162326;162327;162328;162329 163342;163343;163344;163345 163345 4 SMMMSYAAER PYRLAPRPLMLASRRSMMMSYAAERSMMSS LASRRSMMMSYAAERSMMSSYERSMMSYER R S M E R S 2 1 0 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 1 0 0 0 10 0 1175.4773 P18583 P18583 998 1007 SON Protein SON yes yes 2 0.00036469 82.287 By MS/MS By MS/MS By MS/MS 1 1 2 1.1035 1.0237 19.127 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80031 0.89873 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1351 1.166 NaN 1 0 Median 1.2862 1.0678 27.217 2 0 Median 14263000 6342400 7920200 0 0 0 0 0 0 1478000 874520 603450 0 0 0 11286000 4940800 6345600 1498200 527110 971130 31047 2058 32638 162330;162331;162332;162333 163346;163347;163348 163347 3 SMMNLQTK ILCNHQRAPPKTFEKSMMNLQTKIDAKKEQ PPKTFEKSMMNLQTKIDAKKEQLADARRDL K S M T K I 0 0 1 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 0 0 0 0 8 0 951.45177 P11387 P11387 643 650 TOP1 DNA topoisomerase 1 yes yes 2 0.0051787 77.282 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.5597 1.3555 7.2363 4 Median NaN NaN NaN 0 0 Median 1.6559 1.4782 NaN 1 0 Median 1.19 1.2933 NaN 1 0 Median 1.4692 1.2731 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7211 1.4206 NaN 1 0 Median 23209000 10076000 13133000 0 0 0 1196400 401490 794960 15861000 7130700 8730000 4261100 1794700 2466400 0 0 0 1890300 748850 1141400 31048 1962 32639 162334;162335;162336;162337 163349;163350;163351;163352 163349 4 SMMQDREDQSILCTGESGAGK EMPPHIYAITDTAYRSMMQDREDQSILCTG EDQSILCTGESGAGKTENTKKVIQYLAYVA R S M G K T 1 1 0 2 1 2 2 3 0 1 1 1 2 0 0 3 1 0 0 0 0 0 21 1 2298.9879 P35579;Q5BKV1 P35579 160 180 MYH9 Myosin-9 yes no 3 3.159E-14 91.64 By matching By MS/MS 1 1 1.0959 1.0704 7.8792 2 Median 1.1122 1.1317 NaN 1 0 Median 1.0797 1.0124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14845000 6766200 8078500 2731100 1021200 1709800 12114000 5745000 6368600 0 0 0 0 0 0 0 0 0 0 0 0 31049 2244 32640 162338;162339 163353;163354 163353 2 SMMSAYER MMSYERSMMSPMAERSMMSAYERSMMSAYE MSPMAERSMMSAYERSMMSAYERSMMSPMA R S M E R S 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 8 0 973.39974 P18583;H7C1M2 P18583 1032 1039 SON Protein SON yes no 2 0.0087759 62.107 By matching By MS/MS By MS/MS 1 1 2 0.99702 1.0058 17.047 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84025 0.92478 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0739 1.0954 NaN 1 0 Median 1.1155 0.91505 25.253 2 0 Median 36761000 17622000 19139000 0 0 0 0 0 0 2832600 1338300 1494300 0 0 0 22587000 10569000 12018000 11342000 5714800 5627000 31050 2058 32641 162340;162341;162342;162343 163355;163356;163357;163358;163359;163360 163356 6 SMMSMGADR MSAYERSMMSPMADRSMMSMGADRSMMSSY SPMADRSMMSMGADRSMMSSYSAADRSMMS R S M D R S 1 1 0 1 0 0 0 1 0 0 0 0 3 0 0 2 0 0 0 0 0 0 9 0 984.38271 P18583;H7C1M2 P18583 1082 1090 SON Protein SON yes no 2 0.00088636 92.439 By MS/MS 1 1.2933 1.3543 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2933 1.3543 NaN 1 0 Median NaN NaN NaN 0 0 Median 4536400 1919900 2616500 0 0 0 0 0 0 0 0 0 0 0 0 4536400 1919900 2616500 0 0 0 31051 2058 32642 162344 163361 163361 1 SMMSPMAER SMMSSYERSMMSYERSMMSPMAERSMMSAY MMSYERSMMSPMAERSMMSAYERSMMSAYE R S M E R S 1 1 0 0 0 0 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 0 9 0 1038.4297 P18583;H7C1M2 P18583 1023 1031 SON Protein SON yes no 2 0.00088636 92.439 By MS/MS By matching 1 1 0.93147 0.85606 6.499 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86781 0.89632 NaN 1 0 Median 0.9998 0.81761 NaN 1 0 Median 9033300 5291000 3742300 0 0 0 0 0 0 0 0 0 0 0 0 8202100 4875600 3326500 831240 415400 415840 31052 2058 32643 162345;162346 163362;163363 163363 2 SMMSSYER LASRRSMMMSYAAERSMMSSYERSMMSYER MSYAAERSMMSSYERSMMSYERSMMSPMAE R S M E R S 0 1 0 0 0 0 1 0 0 0 0 0 2 0 0 3 0 0 1 0 0 0 8 0 989.39465 P18583;H7C1M2 P18583 1008 1015 SON Protein SON yes no 2 0.0057517 74.127 By MS/MS By matching 1 2 1.0836 0.98946 6.6388 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98139 1.0311 NaN 1 0 Median 1.1385 0.94655 6.2703 2 0 Median 4573800 2339800 2234000 0 0 0 0 0 0 0 0 0 0 0 0 3582100 1939900 1642100 991770 399930 591840 31053 2058 32644 162347;162348;162349 163364 163364 1 SMMSSYSAADR SPMADRSMMSMGADRSMMSSYSAADRSMMS GADRSMMSSYSAADRSMMSSYSAADRSMMS R S M D R S 2 1 0 1 0 0 0 0 0 0 0 0 2 0 0 4 0 0 1 0 0 0 11 0 1204.4853 P18583;H7C1M2 P18583 1091 1101 SON Protein SON yes no 2 0.00015771 109.66 By matching By MS/MS By MS/MS 1 1 2 1.1155 1.0189 4.5442 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85658 0.95409 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0328 1.0562 NaN 1 0 Median 1.2404 1.0189 2.8397 2 0 Median 26384000 12118000 14265000 0 0 0 0 0 0 2063000 1067100 995860 0 0 0 17503000 8329000 9174000 6817500 2722000 4095500 31054 2058 32645 162350;162351;162352;162353 163365;163366;163367;163368;163369 163367 5 SMMSSYTADR AADRSMMSSYSAADRSMMSSYTADRSMMSM SAADRSMMSSYTADRSMMSMAADSYTDSYT R S M D R S 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 3 1 0 1 0 0 0 10 0 1147.4638 P18583;H7C1M2 P18583 1113 1122 SON Protein SON yes no 2 0.0075902 47.603 By matching By MS/MS 1 1 1.2275 1.1408 0.99063 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0926 1.1329 NaN 1 0 Median 1.3791 1.1488 NaN 1 0 Median 8820400 4212600 4607700 0 0 0 0 0 0 0 0 0 0 0 0 7066600 3286000 3780600 1753700 926610 827120 31055 2058 32646 162354;162355 163370 163370 1 SMNSQYLK MCNFLVNLQYRRLYRSMNSQYLKLLSSQKY QYRRLYRSMNSQYLKLLSSQKYQILLYNGD R S M L K L 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 2 0 0 1 0 0 0 8 0 969.45897 X6R8A1;X6R5C5;P10619 X6R8A1 394 401 CTSA Carboxypeptidase;Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 2 0.036811 37.558 By matching By MS/MS 1 1 1.4004 1.2667 13.901 2 Median 1.483 1.3975 NaN 1 0 Median 1.3224 1.1481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2119600 782160 1337400 773690 212860 560830 1345900 569290 776570 0 0 0 0 0 0 0 0 0 0 0 0 31056 1944 32647 162356;162357 163371 163371 1 SMPHQEILAADEVLQESEMR STVSGELQDSVLQDRSMPHQEILAADEVLQ EILAADEVLQESEMRQQDMISHDELMVHEE R S M M R Q 2 1 0 1 0 2 4 0 1 1 2 0 2 0 1 2 0 0 0 1 0 0 20 0 2312.0777 Q9UQR1;C9K0U4;C9J6Y6 Q9UQR1 51 70 ZNF148 Zinc finger protein 148 yes no 3 8.0873E-06 44.238 By MS/MS 1 0.70333 0.75502 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70333 0.75502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2872900 1714000 1158800 0 0 0 0 0 0 2872900 1714000 1158800 0 0 0 0 0 0 0 0 0 31057 4364 32648 162358 163372;163373 163372 2 SMPIRKDDEVQVVR SSPLSKELRQKYNVRSMPIRKDDEVQVVRG RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R S M V R G 0 2 0 2 0 1 1 0 0 1 0 1 1 0 1 1 0 0 0 3 0 0 14 2 1670.8774 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3 P61254 46 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 3;4 3.7945E-06 89.231 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 2 2 0.98516 1.0541 18.217 16 Median 0.95491 1.0572 12.996 6 0 Median 1.0057 1.0522 12.731 4 0 Median 1.0863 1.2466 25.163 2 0 Median 1.2046 1.0444 2.7601 2 0 Median 0.70514 0.84555 38.4 2 0 Median NaN NaN NaN 0 0 Median 121050000 59827000 61225000 70467000 35099000 35368000 25471000 12634000 12837000 4650500 2343600 2306800 7475700 3398400 4077300 12987000 6352300 6634900 0 0 0 31058 2554 32649 162359;162360;162361;162362;162363;162364;162365;162366;162367;162368;162369;162370;162371;162372;162373;162374 163374;163375;163376;163377;163378;163379;163380;163381;163382;163383;163384;163385;163386;163387;163388;163389;163390;163391;163392;163393;163394;163395;163396;163397;163398 163374 25 SMPTSGALDR SIPYFQQTGVRGFARSMPTSGALDRVASAT RGFARSMPTSGALDRVASATKIALYETPTG R S M D R V 1 1 0 1 0 0 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 0 10 0 1033.4862 P36871;A0A3B3ITK7 P36871 334 343 PGM1 Phosphoglucomutase-1 yes no 2 0.010105 44.349 By matching By MS/MS 1 1 1.7897 1.6818 69.385 2 Median 1.0091 1.0297 NaN 1 0 Median 3.1743 2.747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10922000 4062300 6860000 2900600 1699600 1201000 8021600 2362600 5659000 0 0 0 0 0 0 0 0 0 0 0 0 31059 2262 32650 162375;162376 163399 163399 1 SMPWNVDTLSK RSWEQKLEEMRKKEKSMPWNVDTLSKDGFS KKEKSMPWNVDTLSKDGFSKSMVNTKPEKT K S M S K D 0 0 1 1 0 0 0 0 0 0 1 1 1 0 1 2 1 1 0 1 0 0 11 0 1276.6122 Q16543;K7EKQ2;K7EQA9 Q16543 111 121 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.0032932 50.108 By MS/MS By matching By matching 1 1 1 0.99575 0.91768 19.329 3 Median 0.99575 0.91768 NaN 1 0 Median 0.88178 0.74916 NaN 1 0 Median 1.111 1.1025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38150000 19137000 19013000 28451000 14115000 14336000 6730000 3655100 3074900 2969300 1367000 1602300 0 0 0 0 0 0 0 0 0 31060 2988 32651 162377;162378;162379 163400;163401 163400 2 SMQDATQDHAVLEAER HVRQQYQRDTEQLRRSMQDATQDHAVLEAE MQDATQDHAVLEAERQKMSALVRGLQRELE R S M E R Q 3 1 0 2 0 2 2 0 1 0 1 0 1 0 0 1 1 0 0 1 0 0 16 0 1799.8108 Q9P2M7 Q9P2M7 526 541 CGN Cingulin yes yes 3 0.0030118 42.813 By MS/MS 1 1.281 1.342 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.281 1.342 NaN 1 1 Median NaN NaN NaN 0 0 Median 4419500 1903000 2516500 0 0 0 0 0 0 0 0 0 0 0 0 4419500 1903000 2516500 0 0 0 31061 4226 32652 162380 163402 163402 1 SMQGFPFYDKPMR FVIFKEVSSATNALRSMQGFPFYDKPMRIQ LRSMQGFPFYDKPMRIQYAKTDSDIIAKMK R S M M R I 0 1 0 1 0 1 0 1 0 0 0 1 2 2 2 1 0 0 1 0 0 0 13 1 1602.7323 P09012;M0R221;M0R2B8;M0QZG7 P09012 71 83 SNRPA U1 small nuclear ribonucleoprotein A yes no 2;3 1.6462E-05 97.813 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 3 5 3 4 4 0.82418 0.87203 10.462 22 Median 0.76561 0.76877 16.213 3 0 Median 0.9935 0.91873 0.70387 3 0 Plateau 0.80341 0.87146 4.9306 5 0 Median 0.94544 0.89222 5.2598 3 0 Median 0.73303 0.79736 7.0101 4 0 Median 0.94831 0.85704 11.391 4 0 Median 205450000 118270000 87182000 24767000 13232000 11535000 1971700 857650 1114100 107130000 60352000 46776000 10133000 4920500 5212400 57052000 36451000 20600000 4402200 2458400 1943700 31062 1910 32653;32654 162381;162382;162383;162384;162385;162386;162387;162388;162389;162390;162391;162392;162393;162394;162395;162396;162397;162398;162399;162400;162401;162402 163403;163404;163405;163406;163407;163408;163409;163410;163411;163412;163413;163414;163415;163416;163417;163418;163419;163420;163421;163422;163423;163424;163425;163426;163427;163428;163429;163430;163431;163432 163411 688;689 30 SMQNHAAVFR DGSIRTSELRLSMQKSMQNHAAVFRVGSVL LSMQKSMQNHAAVFRVGSVLQEGCGKISKL K S M F R V 2 1 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 10 0 1159.5557 P31040;A0A087X1I3 P31040 518 527 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 3.1882E-07 132.01 By MS/MS By MS/MS 1 2 0.74807 0.68091 18.824 2 Median 0.81246 0.77785 NaN 1 1 Median 0.68879 0.59605 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16770000 10540000 6229600 8316500 4737200 3579300 8453200 5802800 2650400 0 0 0 0 0 0 0 0 0 0 0 0 31063 2200 32655 162403;162404;162405 163433;163434;163435 163434 3 SMQPGTSLAK FRHDKVYVIGSFVDKSMQPGTSLAKAKRLN SFVDKSMQPGTSLAKAKRLNLATECLPLDK K S M A K A 1 0 0 0 0 1 0 1 0 0 1 1 1 0 1 2 1 0 0 0 0 0 10 0 1018.5117 Q7L0Y3 Q7L0Y3 316 325 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.042746 30.254 By matching By MS/MS 1 1 1.0094 0.92669 24.477 2 Median 0.79698 0.77941 NaN 1 0 Median 1.2784 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2238500 923010 1315500 402970 190600 212370 1835500 732410 1103100 0 0 0 0 0 0 0 0 0 0 0 0 31064 3218 32656 162406;162407 163436 163436 1 SMQVVPLDK QEQMCNVGVSMGLTRSMQVVPLDKQITIID SMGLTRSMQVVPLDKQITIIDSPSFIVSPL R S M D K Q 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 2 0 0 9 0 1015.5372 Q9BVP2 Q9BVP2 291 299 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.011103 47.603 By MS/MS 1 0.76952 0.73334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76952 0.73334 NaN 1 0 Median NaN NaN NaN 0 0 Median 7220100 3472600 3747500 0 0 0 0 0 0 0 0 0 0 0 0 7220100 3472600 3747500 0 0 0 31065 3858 32657 162408 163437;163438 163438 2 SMSFQGIR IEPHTGLLLLSVQKRSMSFQGIRQPVTVTE LLSVQKRSMSFQGIRQPVTVTELVDSGILR R S M I R Q 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 8 0 924.44874 P15924 P15924 2207 2214 DSP Desmoplakin yes yes 2 0.069362 30.612 By MS/MS 1 1.4322 1.2029 NaN 1 Median NaN NaN NaN 0 0 Median 1.4322 1.2029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1074300 397430 676900 0 0 0 1074300 397430 676900 0 0 0 0 0 0 0 0 0 0 0 0 31066 2021 32658 162409 163439 163439 1 SMSGHPEAAQMVR KGPAEDMSSKLNQARSMSGHPEAAQMVRRE ARSMSGHPEAAQMVRREFQLDLDEIENDNG R S M V R R 2 1 0 0 0 1 1 1 1 0 0 0 2 0 1 2 0 0 0 1 0 0 13 0 1399.6337 Q14008;H0YCF6;H0YEK7 Q14008 1469 1481 CKAP5 Cytoskeleton-associated protein 5 yes no 2;3 0.00015767 70.089 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 1 1 0.99614 0.87571 24.108 10 Median 0.91483 0.91835 25.372 2 0 Median 1.024 0.87022 23.022 2 0 Median 1.1065 1.2101 NaN 1 0 Median 1.0146 0.89311 12.612 3 0 Plateau 1.0944 1.144 NaN 1 0 Median 0.68792 0.57435 NaN 1 0 Median 25588000 12359000 13229000 2939500 1414400 1525200 3391700 1589000 1802700 9246000 4271200 4974800 7323800 3611700 3712100 1367200 685530 681690 1319500 786840 532650 31067 2850 32659 162410;162411;162412;162413;162414;162415;162416;162417;162418;162419 163440;163441;163442;163443;163444;163445;163446;163447;163448;163449 163447 10 SMSLVLDEFYSSLR DALNQETTYVSNLTRSMSLVLDEFYSSLRV RSMSLVLDEFYSSLRVVGVSAVLGTGLDEL R S M L R V 0 1 0 1 0 0 1 0 0 0 3 0 1 1 0 4 0 0 1 1 0 0 14 0 1645.8022 Q9HCN4 Q9HCN4 226 239 GPN1 GPN-loop GTPase 1 yes yes 2 9.8947E-05 85.958 By MS/MS 2 1.242 1.0674 1.7107 2 Median NaN NaN NaN 0 0 Median 1.242 1.0674 1.7107 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616400 2056700 2559700 0 0 0 4616400 2056700 2559700 0 0 0 0 0 0 0 0 0 0 0 0 31068 4031 32660 162420;162421 163450;163451 163450 2 SMSTEGLMK LIWSRALGFPLERPKSMSTEGLMKFVDSKS PLERPKSMSTEGLMKFVDSKSG________ K S M M K F 0 0 0 0 0 0 1 1 0 0 1 1 2 0 0 2 1 0 0 0 0 0 9 0 982.44635 O75390;B4DJV2;A0A0C4DGI3 O75390 451 459 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.0020081 75.213 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.2486 1.1615 8.6411 9 Median 1.025 0.96674 3.0784 2 0 Median 1.377 1.1723 1.6339 3 0 Median 1.1466 1.1412 2.4974 2 0 Median 1.2987 1.164 4.8853 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70004000 32424000 37580000 16759000 8537100 8221500 22612000 9952400 12659000 9863400 4724300 5139100 20770000 9209800 11561000 0 0 0 0 0 0 31069 594 32661;32662 162422;162423;162424;162425;162426;162427;162428;162429;162430 163452;163453;163454;163455;163456;163457;163458;163459;163460 163454 230 9 SMSVYCTPNKPSR LMKKEFTLEFSRDRKSMSVYCTPNKPSRTS RKSMSVYCTPNKPSRTSMSKMFVKGAPEGV K S M S R T 0 1 1 0 1 0 0 0 0 0 0 1 1 0 2 3 1 0 1 1 0 0 13 1 1525.7017 P16615;H7C5W9 P16615 493 505 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 3 0.00022812 66.989 By MS/MS 1 0.79303 0.74154 NaN 1 Median NaN NaN NaN 0 0 Median 0.79303 0.74154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4197900 2354200 1843700 0 0 0 4197900 2354200 1843700 0 0 0 0 0 0 0 0 0 0 0 0 31070 2031 32663 162431 163461;163462 163462 2 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR SSLDGDLAGRYYALKSMTEAEQQQLIDDHF DKPVSPLLLASGMARDWPDARGIWHNDNKT K S M A R D 3 1 0 3 0 3 2 1 1 1 5 1 2 2 2 3 1 0 0 1 0 0 32 1 3586.78 P12277;G3V4N7 P12277 178 209 CKB Creatine kinase B-type yes no 3;4 2.9036E-09 40.837 By matching By MS/MS 1 2 0.63569 0.68837 8.5212 3 Median NaN NaN NaN 0 0 Median 0.73121 0.68837 NaN 1 0 Median 0.58523 0.66518 11.722 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18521000 11279000 7242000 0 0 0 7040000 3415200 3624800 11481000 7864200 3617200 0 0 0 0 0 0 0 0 0 31071 1980 32664 162432;162433;162434 163463;163464;163465 163464 3 SMTLEIR APVAKDLASRDVVSRSMTLEIREGRGCGPE ASRDVVSRSMTLEIREGRGCGPEKDHVYLQ R S M I R E 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 7 0 848.44259 P31040;D6RFM5;A0A087X1I3;A0A494C1T6 P31040 346 352 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.0045798 100.07 By MS/MS By MS/MS 2 2 1.3137 1.1883 12.556 4 Median 1.137 1.1125 4.0095 2 1 Median 1.5423 1.3351 11.153 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52801000 21768000 31033000 27504000 12432000 15072000 25297000 9335700 15961000 0 0 0 0 0 0 0 0 0 0 0 0 31072 2200 32665;32666 162435;162436;162437;162438 163466;163467;163468;163469;163470 163470 935 5 SMTLLNTMDR EDPHLPKEKVLKLYKSMTLLNTMDRILYES LKLYKSMTLLNTMDRILYESQRQGRISFYM K S M D R I 0 1 1 1 0 0 0 0 0 0 2 0 2 0 0 1 2 0 0 0 0 0 10 0 1180.558 F5H5P2;P12694;H0YH31 F5H5P2 142 151 BCKDHA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 2 0.0028032 69.825 By MS/MS By MS/MS 1 1 0.96668 0.89439 8.3767 2 Median 0.85657 0.84295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.091 0.94896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7496800 3591800 3905000 4755400 2311000 2444400 0 0 0 0 0 0 2741400 1280800 1460600 0 0 0 0 0 0 31073 1037 32667 162439;162440 163471;163472;163473 163472 2 SMTLPSYRPAPLVSGDLR SDRQLSESSTKDSLKSMTLPSYRPAPLVSG LPSYRPAPLVSGDLRENMAPANSEATKEAK K S M L R E 1 2 0 1 0 0 0 1 0 0 3 0 1 0 3 3 1 0 1 1 0 0 18 1 1959.0248 E7EX40;Q6WKZ4 E7EX40 244 261 RAB11FIP1 Rab11 family-interacting protein 1 yes no 3 0.01616 20.368 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.71587 0.64779 36.52 5 Median 0.85796 0.89838 63.584 2 0 Median 0.65475 0.64779 NaN 1 0 Median 0.78 0.87042 NaN 1 0 Median 0.71587 0.63433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10741000 5276400 5464800 5932400 3044500 2887900 153040 82850 70191 4449000 2040100 2408800 206790 108950 97846 0 0 0 0 0 0 31074 905 32668 162441;162442;162443;162444;162445 163474;163475 163474 2 SMVAVMDSDTTGK HPDLKTDGFGIDTCRSMVAVMDSDTTGKLG CRSMVAVMDSDTTGKLGFEEFKYLWNNIKR R S M G K L 1 0 0 2 0 0 0 1 0 0 0 1 2 0 0 2 2 0 0 2 0 0 13 0 1340.5952 A0A0C4DGQ5;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7EKD8;U3KPR7;K7EM73 A0A0C4DGQ5 146 158 CAPNS1 Calpain small subunit 1 yes no 2 6.6201E-07 164.64 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.0004 0.92901 14.732 8 Median 0.92696 0.86496 12.096 4 0 Median 1.3042 1.1067 10.644 2 0 Median 0.96492 0.90427 NaN 1 0 Median 1.153 0.95443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146520000 70564000 75953000 114590000 55822000 58770000 18978000 8163800 10814000 11129000 5863100 5266000 1817400 714640 1102800 0 0 0 0 0 0 31075 251 32669;32670 162446;162447;162448;162449;162450;162451;162452;162453 163476;163477;163478;163479;163480;163481;163482;163483;163484;163485;163486;163487;163488 163483 111;112 13 SMVEDITGLR PKTKLKISYKDAINRSMVEDITGLRLLEAA DAINRSMVEDITGLRLLEAASVSSKGLPSP R S M L R L 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1119.5594 P15924 P15924 2792 2801 DSP Desmoplakin yes yes 2 0.00033827 108.74 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 4 2 1.035 0.96117 13.541 15 Median 1.0864 1.0545 8.9618 2 0 Median 1.3107 0.97603 11.3 3 0 Plateau 0.755 0.81938 9.4874 2 0 Median 1.1958 1.0419 13.33 2 0 Median 0.94208 0.88146 9.1277 4 0 Linear 1.2856 1.1137 0.91809 2 0 Median 52180000 25975000 26205000 15766000 7451800 8314200 6034900 2625300 3409500 10922000 6186800 4735700 835750 360870 474880 17242000 8757600 8484200 1379200 592450 786750 31076 2021 32671 162454;162455;162456;162457;162458;162459;162460;162461;162462;162463;162464;162465;162466;162467;162468 163489;163490;163491;163492;163493;163494;163495;163496;163497;163498;163499;163500 163494 12 SMVEEGTGLR PKTKLKISYKDALDRSMVEEGTGLRLLEAA DALDRSMVEEGTGLRLLEAAAQSTKGYYSP R S M L R L 0 1 0 0 0 0 2 2 0 0 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1077.5125 Q15149;H0YDN1 Q15149 4590 4599 PLEC Plectin yes no 2 0.00052686 114.89 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1 0.98648 0.93991 17.759 6 Median 1.1031 1.1095 NaN 1 1 Median 0.87014 0.74405 NaN 1 0 Median 0.80522 0.87395 NaN 1 1 Median 1.3781 1.1997 NaN 1 1 Median 0.88217 0.86513 NaN 1 0 Median 1.245 1.0109 NaN 1 0 Median 15389000 7671800 7716700 4110300 2145300 1965000 2568300 1213700 1354600 3889600 2339500 1550100 1769300 618540 1150700 1756500 811310 945180 1294500 543460 751050 31077 2933 32672 162469;162470;162471;162472;162473;162474;162475;162476 163501;163502;163503;163504;163505;163506;163507 163501 7 SMVEQLDK IQELVLRFCEKNCEKSMVEQLDKFLNDTTK CEKNCEKSMVEQLDKFLNDTTKPVGLLLSE K S M D K F 0 0 0 1 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 8 0 948.45863 Q9P287 Q9P287 160 167 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 2 0.011566 75.109 By MS/MS 1 1.0827 0.9317 NaN 1 Median NaN NaN NaN 0 0 Median 1.0827 0.9317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3203700 1524100 1679600 0 0 0 3203700 1524100 1679600 0 0 0 0 0 0 0 0 0 0 0 0 31078 4218 32673 162477 163508 163508 1 SMVNLMDR HKDLRTKGFSLESCRSMVNLMDRDGNGKLG FSLESCRSMVNLMDRDGNGKLGLVEFNILW R S M D R D 0 1 1 1 0 0 0 0 0 0 1 0 2 0 0 1 0 0 0 1 0 0 8 0 964.44702 P07384 P07384 592 599 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0023526 114.6 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.332 1.2046 30.897 4 Median 1.0862 1.0275 NaN 1 0 Median 1.6334 1.4122 NaN 1 0 Median 0.71666 0.76432 NaN 1 0 Median 1.7538 1.4855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23896000 11178000 12718000 14369000 7268900 7099900 6363600 2249700 4113900 2765200 1508000 1257200 398630 151680 246940 0 0 0 0 0 0 31079 1886 32674 162478;162479;162480;162481 163509;163510;163511;163512 163510 4 SMVNTKPEKTEEDSEEVR MPWNVDTLSKDGFSKSMVNTKPEKTEEDSE NTKPEKTEEDSEEVREQKHKTFVEKYEKQI K S M V R E 0 1 1 1 0 0 5 0 0 0 0 2 1 0 1 2 2 0 0 2 0 0 18 2 2106.9739 Q16543 Q16543 127 144 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes yes 3;4 0.000823 41.202 By MS/MS By MS/MS 2 1 0.96805 0.99196 9.8306 3 Plateau 0.80772 0.90256 11.567 2 0 Median 0.96805 0.99196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4641900 2251200 2390800 2573900 1274200 1299700 2068100 976960 1091100 0 0 0 0 0 0 0 0 0 0 0 0 31080 2988 32675 162482;162483;162484 163513;163514;163515;163516 163516 3 SMVPVQVQLDVPVVK RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK SMVPVQVQLDVPVVKVASGNDHLVMLTADG K S M V K V 0 0 0 1 0 2 0 0 0 0 1 1 1 0 2 1 0 0 0 6 0 0 15 0 1636.9222 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 162 176 RCC1 Regulator of chromosome condensation yes no 2 1.3519E-09 122.42 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 7 7 8 7 0.86471 0.82259 14.513 30 Median NaN NaN NaN 0 0 Median 0.77001 0.87627 NaN 1 0 Median 0.82656 0.80046 10.787 7 0 Median 1.0046 0.84933 8.48 7 0 Median 0.84024 0.83725 10.574 8 0 Median 0.95961 0.74037 16.545 7 1 Plateau 1168900000 603360000 565510000 0 0 0 169300 71922 97376 259250000 141270000 117980000 724040000 366660000 357380000 96095000 50842000 45252000 89315000 44513000 44801000 31081 2061 32676;32677 162485;162486;162487;162488;162489;162490;162491;162492;162493;162494;162495;162496;162497;162498;162499;162500;162501;162502;162503;162504;162505;162506;162507;162508;162509;162510;162511;162512;162513;162514 163517;163518;163519;163520;163521;163522;163523;163524;163525;163526;163527;163528;163529;163530;163531;163532;163533;163534;163535;163536;163537;163538;163539;163540;163541;163542;163543;163544;163545;163546;163547;163548;163549;163550;163551 163545 830 35 SMVQFIGR AATLITHPFHVITLRSMVQFIGRESKYCGL FHVITLRSMVQFIGRESKYCGLCDSIITIY R S M G R E 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 8 0 936.48512 Q9Y6C9;E9PIE4 Q9Y6C9 148 155 MTCH2 Mitochondrial carrier homolog 2 yes no 2 0.0060114 73.039 By MS/MS By MS/MS 2 2 1.1469 1.0284 9.6699 4 Median 1.0815 1.0176 5.7391 2 1 Median 1.3096 1.0995 13.703 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90472000 42901000 47570000 79765000 38566000 41200000 10706000 4335400 6370700 0 0 0 0 0 0 0 0 0 0 0 0 31082 4488 32678;32679 162515;162516;162517;162518 163552;163553;163554;163555 163552 2000 4 SMVTEEFNGSDWEK GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA RSMVTEEFNGSDWEKAMKEHKTIKNMSKE_ R S M E K A 0 0 1 1 0 0 3 1 0 0 0 1 1 1 0 2 1 1 0 1 0 0 14 0 1657.693 Q7Z7K6 Q7Z7K6 248 261 CENPV Centromere protein V yes yes 2 0.0029894 39.917 By matching By matching By MS/MS By matching 1 1 1 3 1.1011 0.91037 26.313 6 Median NaN NaN NaN 0 0 Median 1.0436 0.87974 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8672 1.5889 NaN 1 0 Median 0.73886 0.73524 NaN 1 0 Median 1.1501 0.94206 8.0481 3 0 Median 5518300 2791600 2726800 0 0 0 127160 56274 70887 0 0 0 271100 75330 195770 4525100 2378400 2146600 595010 281540 313470 31083 3261 32680 162519;162520;162521;162522;162523;162524 163556 163556 1 SMVVSHPHLVAEAYR INYHASDVLETSGWKSMVVSHPHLVAEAYR SMVVSHPHLVAEAYRSLASAQCPFLGPPRK K S M Y R S 2 1 0 0 0 0 1 0 2 0 1 0 1 0 1 2 0 0 1 3 0 0 15 0 1694.8563 O43791 O43791 340 354 SPOP Speckle-type POZ protein yes yes 3;4 9.3842E-05 55.885 By MS/MS By matching 3 1 0.77731 0.81425 19.582 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68721 0.75103 10.803 3 0 Median 1.2852 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36050000 18920000 17130000 0 0 0 0 0 0 27748000 15610000 12138000 8302500 3310300 4992200 0 0 0 0 0 0 31084 1590 32681 162525;162526;162527;162528 163557;163558 163557 2 SMWTEHKSPDGR VNSMDVAAGTASGAKSMWTEHKSPDGRTYY GAKSMWTEHKSPDGRTYYYNTETKQSTWEK K S M G R T 0 1 0 1 0 0 1 1 1 0 0 1 1 0 1 2 1 1 0 0 0 0 12 1 1429.6408 O75400;A0A3F2YNY6;F5H578;H0YG38 O75400 144 155 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 0.0096251 28.327 By MS/MS 1 0.97104 1.1087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97104 1.1087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1453100 744880 708230 0 0 0 0 0 0 1453100 744880 708230 0 0 0 0 0 0 0 0 0 31085 1670 32682 162529 163559 163559 1 SMYEEEINETR ENRCQSLTEDLEFRKSMYEEEINETRRKHE EFRKSMYEEEINETRRKHETRLVEVDSGRQ K S M T R R 0 1 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 11 0 1399.5926 P20700;E9PBF6;A0A0D9SFE5 P20700 210 220 LMNB1 Lamin-B1 yes no 2 8.9242E-10 174.41 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 6 7 1.233 1.027 25.764 19 Median 0.98078 0.97802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85246 0.86398 12.722 2 0 Median 1.5616 1.3126 35.841 3 0 Median 0.84887 0.85316 4.931 6 0 Median 1.3663 1.1408 8.0872 7 0 Median 493230000 239370000 253860000 2782700 1495000 1287600 0 0 0 11862000 6235000 5626700 54636000 18593000 36043000 370500000 191470000 179030000 53449000 21577000 31872000 31086 2084 32683;32684 162530;162531;162532;162533;162534;162535;162536;162537;162538;162539;162540;162541;162542;162543;162544;162545;162546;162547;162548 163560;163561;163562;163563;163564;163565;163566;163567;163568;163569;163570;163571;163572;163573;163574;163575;163576;163577;163578;163579;163580;163581;163582;163583;163584;163585;163586;163587;163588 163576 843 29 SMYEEEINETRR ENRCQSLTEDLEFRKSMYEEEINETRRKHE FRKSMYEEEINETRRKHETRLVEVDSGRQI K S M R R K 0 2 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 12 1 1555.6937 P20700;E9PBF6;A0A0D9SFE5 P20700 210 221 LMNB1 Lamin-B1 yes no 2;3 2.9969E-09 172.27 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 7 1.0935 1.006 19.808 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83908 0.93634 5.4581 2 0 Median 1.4795 1.3786 7.9872 2 0 Median 0.8506 0.93246 10.595 6 0 Median 1.3609 1.2031 19.82 7 0 Median 325890000 170080000 155810000 0 0 0 0 0 0 33406000 17141000 16265000 15401000 6745500 8655600 237930000 129550000 108380000 39150000 16643000 22507000 31087 2084 32685;32686 162549;162550;162551;162552;162553;162554;162555;162556;162557;162558;162559;162560;162561;162562;162563;162564;162565 163589;163590;163591;163592;163593;163594;163595;163596;163597;163598;163599;163600;163601;163602;163603;163604;163605;163606;163607;163608;163609 163597 843 21 SNAHYNLQNAFNLAEQHLGLTK HKHRPDLIDFDKLKKSNAHYNLQNAFNLAE QNAFNLAEQHLGLTKLLDPEDISVDHPDEK K S N T K L 3 0 4 0 0 2 1 1 2 0 4 1 0 1 0 1 1 0 1 0 0 0 22 0 2482.2353 Q01082;A0A087WUZ3;F8W6C1 Q01082 228 249 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 1.6135E-12 72.316 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0955 1.0594 23.262 7 Median 1.4027 1.3847 31.185 2 1 Median 1.2048 1.0633 0.52017 2 0 Median 0.86481 0.95536 2.9739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98149 0.82462 NaN 1 0 Median 48768000 23467000 25301000 8022600 3743800 4278800 15376000 6492800 8883700 24579000 12800000 11779000 0 0 0 0 0 0 789810 430380 359430 31088 2681 32687 162566;162567;162568;162569;162570;162571;162572 163610;163611;163612;163613;163614;163615 163611 6 SNASLTNNQNLIQSLK QLTEEIGRLKAEIARSNASLTNNQNLIQSL NASLTNNQNLIQSLKEDLNKVRTEKETIQK R S N L K E 1 0 4 0 0 2 0 0 0 1 3 1 0 0 0 3 1 0 0 0 0 0 16 0 1743.9115 P12270 P12270 1385 1400 TPR Nucleoprotein TPR yes yes 2 1.0756E-09 117.23 By matching By MS/MS By MS/MS 1 2 2 1.0258 0.99447 12.843 5 Median NaN NaN NaN 0 0 Median 1.3198 1.1575 NaN 1 0 Median 0.88797 0.97123 3.345 2 0 Median 1.2 1.1156 19.141 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15221000 7944500 7276300 0 0 0 1400000 657510 742470 11680000 6265900 5414300 2140600 1021100 1119500 0 0 0 0 0 0 31089 1978 32688 162573;162574;162575;162576;162577 163616;163617;163618;163619 163617 4 SNASLTNNQNLIQSLKEDLNK QLTEEIGRLKAEIARSNASLTNNQNLIQSL NNQNLIQSLKEDLNKVRTEKETIQKDLDAK R S N N K V 1 0 5 1 0 2 1 0 0 1 4 2 0 0 0 3 1 0 0 0 0 0 21 1 2343.203 P12270 P12270 1385 1405 TPR Nucleoprotein TPR yes yes 3 3.1602E-14 91.637 By matching By MS/MS 2 1 1.122 1.0736 11.333 3 Median NaN NaN NaN 0 0 Median 1.2207 1.1801 13.38 2 0 Median 0.91372 1.0592 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43589000 20444000 23145000 0 0 0 26195000 11751000 14444000 17394000 8693400 8700300 0 0 0 0 0 0 0 0 0 31090 1978 32689 162578;162579;162580 163620;163621 163620 2 SNASTLESHETEEPAAK FTVAMDNLKADTSLKSNASTLESHETEEPA ASTLESHETEEPAAKKRKCPESDS______ K S N A K K 3 0 1 0 0 0 4 0 1 0 1 1 0 0 1 3 2 0 0 0 0 0 17 0 1799.8174 Q9UJA5 Q9UJA5 472 488 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 3 0.0001444 41.422 By matching By MS/MS 1 2 0.75021 0.72026 19.842 3 Median 0.75021 0.72026 NaN 1 0 Median 0.88928 0.77363 27.446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7420000 4047900 3372100 4135300 2321500 1813800 3284600 1726300 1558300 0 0 0 0 0 0 0 0 0 0 0 0 31091 4294 32690 162581;162582;162583 163622;163623 163622 2 SNDPVATAFAEMLK ETNTHVKCFSLAATRSNDPVATAFAEMLKV RSNDPVATAFAEMLKVNKTLKSLNVESNFI R S N L K V 3 0 1 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 14 0 1492.7232 Q9NYL9;H0YKU1;H0YNJ8 Q9NYL9 239 252 TMOD3 Tropomodulin-3 yes no 2 0.0015468 48.004 By MS/MS By matching 3 1 0.89596 0.88157 13.092 4 Median 1.0032 0.94431 14.835 3 0 Median NaN NaN NaN 0 0 Median 0.73728 0.82299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5421100 2785000 2636100 3419200 1680700 1738500 0 0 0 2002000 1104400 897620 0 0 0 0 0 0 0 0 0 31092 4178 32691 162584;162585;162586;162587 163624;163625 163625 2 SNEDQSMGNWQIK EEVDEEGKFVRLRNKSNEDQSMGNWQIKRQ NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP K S N I K R 0 0 2 1 0 2 1 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 13 0 1535.6675 P02545;A0A0C4DGC5 P02545 458 470 LMNA Prelamin-A/C;Lamin-A/C no no 2 2.509E-11 137.98 By MS/MS By MS/MS By MS/MS By matching 3 3 5 4 1.21 1.1274 22.871 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.21 1.1894 7.332 3 0 Median 1.4924 1.2388 5.3651 3 0 Plateau 0.93902 0.93722 23.658 5 2 Median 1.4498 1.2078 15.779 4 0 Median 150010000 74791000 75217000 0 0 0 0 0 0 75534000 32911000 42623000 12982000 5197200 7784400 58172000 35295000 22877000 3320500 1388300 1932200 31093 1834 32692;32693 162588;162589;162590;162591;162592;162593;162594;162595;162596;162597;162598;162599;162600;162601;162602 163626;163627;163628;163629;163630;163631;163632;163633;163634;163635;163636;163637 163634 598 12 SNEDQSMGNWQIKR EEVDEEGKFVRLRNKSNEDQSMGNWQIKRQ KSNEDQSMGNWQIKRQNGDDPLLTYRFPPK K S N K R Q 0 1 2 1 0 2 1 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 14 1 1691.7686 P02545;A0A0C4DGC5 P02545 458 471 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 2.342E-44 180.36 By matching By matching By MS/MS By matching 2 1 7 1 1.1215 1.152 21.267 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1553 1.2269 14.628 2 0 Median 2.2951 2.0317 NaN 1 0 Median 1.0805 1.1463 12.04 7 4 Median 1.8188 1.5882 NaN 1 0 Median 108040000 52841000 55197000 0 0 0 0 0 0 18374000 8111800 10262000 704530 288870 415660 87656000 44034000 43622000 1303600 406640 896930 31094 1834 32694 162603;162604;162605;162606;162607;162608;162609;162610;162611;162612;162613 163638;163639;163640;163641;163642;163643;163644 163643 7 SNEEGSEEKGPEVR GQRAAWRVLSSIEQKSNEEGSEEKGPEVRE KSNEEGSEEKGPEVREYREKVETELQGVCD K S N V R E 0 1 1 0 0 0 5 2 0 0 0 1 0 0 1 2 0 0 0 1 0 0 14 1 1545.6907 P31947 P31947 69 82 SFN 14-3-3 protein sigma yes yes 3 0.0019 37.013 By MS/MS By MS/MS 2 1 0.74059 0.77956 26.386 3 Median 0.67746 0.68791 17.687 2 0 Median 1.0994 1.0287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3456900 1832900 1624000 1909500 1026600 882910 1547300 806270 741060 0 0 0 0 0 0 0 0 0 0 0 0 31095 2211 32695 162614;162615;162616 163645;163646;163647 163647 3 SNEGKELLVPLTSSMYVPGK TKYVEAKDCLNVLNKSNEGKELLVPLTSSM ELLVPLTSSMYVPGKLHDVEHVLIDVGTGY K S N G K L 0 0 1 0 0 0 2 2 0 0 3 2 1 0 2 3 1 0 1 2 0 0 20 1 2148.1137 Q99471 Q99471 56 75 PFDN5 Prefoldin subunit 5 yes yes 3 3.9451E-06 48.229 By MS/MS By matching 1 1 0.79434 0.74745 17.493 2 Median 0.84706 0.84587 NaN 1 0 Median 0.74491 0.66049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11024000 6280500 4744000 10692000 6126600 4565800 332130 153870 178260 0 0 0 0 0 0 0 0 0 0 0 0 31096 3747 32696 162617;162618 163648;163649 163648 2 SNEILTAIIQGMR GYICQDIDPEQLQDKSNEILTAIIQGMRKE DKSNEILTAIIQGMRKEEPSNNVKLAATNA K S N M R K 1 1 1 0 0 1 1 1 0 3 1 0 1 0 0 1 1 0 0 0 0 0 13 0 1444.7708 Q14974;J3KTM9;J3QRG4 Q14974 170 182 KPNB1 Importin subunit beta-1 yes no 2 2.0207E-54 240.1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 4 5 1 1 1 1.2352 1.1286 16.278 14 Median 1.171 1.12 2.5259 2 0 Median 1.2884 1.1143 29.807 4 0 Median 1.1212 1.1854 6.9903 5 1 Median 1.2241 1.0701 NaN 1 0 Median 1.2801 1.3548 NaN 1 1 Median 1.3664 1.137 NaN 1 0 Median 151990000 67423000 84567000 18663000 8368200 10295000 84430000 36533000 47897000 45600000 21128000 24472000 61281 28402 32879 2929200 1233400 1695900 307290 132520 174770 31097 2904 32697;32698 162619;162620;162621;162622;162623;162624;162625;162626;162627;162628;162629;162630;162631;162632 163650;163651;163652;163653;163654;163655;163656;163657;163658;163659;163660;163661;163662;163663;163664;163665;163666;163667;163668;163669;163670 163665 1592 21 SNELFTTFR LYMDKFEEFQTTMAKSNELFTTFRQEMEKM QTTMAKSNELFTTFRQEMEKMTKKIKKLEK K S N F R Q 0 1 1 0 0 0 1 0 0 0 1 0 0 2 0 1 2 0 0 0 0 0 9 0 1113.5455 Q9NUQ3 Q9NUQ3 371 379 TXLNG Gamma-taxilin yes yes 2 0.056937 29.162 By MS/MS By matching By matching By matching 1 1 1 2 1.2521 1.2082 13.342 5 Median 1.3287 1.3441 NaN 1 0 Median 1.1864 1.0314 NaN 1 0 Median 1.2521 1.3359 NaN 1 0 Median 1.2957 1.1122 11.71 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6108600 2525300 3583200 1954900 758320 1196500 928870 402780 526080 2215500 883250 1332200 1009400 480990 528380 0 0 0 0 0 0 31098 4118 32699 162633;162634;162635;162636;162637 163671 163671 1 SNELWTEIK RTAHSLFKRYRHEFKSNELWTEIKLVLDAF YRHEFKSNELWTEIKLVLDAFALPLTNLFK K S N I K L 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 9 0 1118.5608 P55060 P55060 166 174 CSE1L Exportin-2 yes yes 2 0.00316 83.265 By MS/MS By MS/MS By matching 3 1 1 1.1043 1.069 22.25 5 Median 1.1828 1.0876 21.856 3 1 Plateau 1.2043 1.032 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97143 0.85307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27588000 12927000 14661000 22937000 10799000 12138000 4561400 2077500 2483900 0 0 0 89423 50126 39297 0 0 0 0 0 0 31099 2493 32700 162638;162639;162640;162641;162642 163672;163673 163672 2 SNESVDIQDQEEK EEGSRKKRSGKWKNKSNESVDIQDQEEKVV NKSNESVDIQDQEEKVVKQECIKAENQSHD K S N E K V 0 0 1 2 0 2 3 0 0 1 0 1 0 0 0 2 0 0 0 1 0 0 13 0 1519.6638 Q5UIP0 Q5UIP0 1576 1588 RIF1 Telomere-associated protein RIF1 yes yes 2 0.00054372 70.977 By MS/MS By matching 1 2 0.86291 0.89465 5.9108 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80297 0.89465 NaN 1 0 Median 0.90287 0.82363 4.9268 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3279000 1744200 1534800 0 0 0 0 0 0 2373300 1310000 1063300 905670 434170 471500 0 0 0 0 0 0 31100 3109 32701 162643;162644;162645 163674;163675 163675 2 SNFAEALAAHK ADAPEEEDHVLVLRKSNFAEALAAHKYLLV VLRKSNFAEALAAHKYLLVEFYAPWCGHCK K S N H K Y 4 0 1 0 0 0 1 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1157.5829 P07237;H7BZ94;I3L312;I3L0S0;I3NI03;I3L3U6;I3L514;I3L3P5;I3L1Y5 P07237 32 42 P4HB Protein disulfide-isomerase yes no 2 0.00016475 91.867 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.2561 1.1718 15.174 7 Median 1.2561 1.1718 7.313 3 2 Plateau 1.6277 1.3782 22.662 2 0 Median 1.1225 1.1467 NaN 1 1 Median 1.5228 1.3105 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90373000 38821000 51551000 60414000 26575000 33839000 25111000 10030000 15080000 3321000 1571800 1749200 1527000 643890 883110 0 0 0 0 0 0 31101 1883 32702 162646;162647;162648;162649;162650;162651;162652 163676;163677;163678;163679;163680;163681;163682;163683;163684;163685 163678 10 SNFFAIIR STQRSQQLEFKLEERSNFFAIIRKFQLMVQ EFKLEERSNFFAIIRKFQLMVQESETLIIP R S N I R K 1 1 1 0 0 0 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 8 0 966.5287 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2837 2844 SYNE2 Nesprin-2 yes no 2 0.019561 47.067 By MS/MS By matching 1 1 1.0688 0.98994 16.002 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84566 0.88403 NaN 1 0 Median 1.3508 1.1085 NaN 1 0 Median 1679400 894750 784690 0 0 0 0 0 0 0 0 0 0 0 0 1437600 812360 625270 241810 82394 159420 31102 3521 32703 162653;162654 163686 163686 1 SNFGYNIPLK RSLADIAREEASNFRSNFGYNIPLKHLADR ASNFRSNFGYNIPLKHLADRVAMYVHAYTL R S N L K H 0 0 2 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 10 0 1151.5975 P25788;G3V4X5 P25788 101 110 PSMA3 Proteasome subunit alpha type-3 yes no 2 0.00083236 70.919 By MS/MS By matching By MS/MS 2 1 1 1.1677 1.0759 161.73 4 Median 1.1677 1.0759 9.2761 2 0 Median 0.04973 0.045419 NaN 1 0 Median 1.386 1.2993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201860000 100310000 101550000 175610000 84859000 90753000 7341500 6967000 374580 18909000 8485000 10424000 0 0 0 0 0 0 0 0 0 31103 2137 32704 162655;162656;162657;162658 163687;163688;163689;163690;163691 163687 5 SNFKPSLLAQK REVGRTKLEVKVVIKSNFKPSLLAQKIEVR VVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ K S N Q K I 1 0 1 0 0 1 0 0 0 0 2 2 0 1 1 2 0 0 0 0 0 0 11 1 1231.6925 A0A087WY71;E9PFW3;Q96CW1;C9JJ47 A0A087WY71 308 318 AP2M1 AP-2 complex subunit mu yes no 2;3 0.00082505 79.07 By matching By matching By MS/MS By MS/MS 1 2 2 2 0.97916 1.0214 22.18 7 Median 1.3999 1.3523 NaN 1 0 Median 0.94448 0.88884 5.1083 2 0 Median 0.78788 0.82368 30.423 2 0 Median 1.1224 1.066 5.5664 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45490000 21650000 23840000 1923300 837610 1085700 3968200 1800200 2168100 20614000 10257000 10357000 18984000 8755200 10229000 0 0 0 0 0 0 31104 78 32705 162659;162660;162661;162662;162663;162664;162665 163692;163693;163694;163695;163696 163696 5 SNFSNSADDIK ENNKPREKSESNKRKSNFSNSADDIKSKKK NKRKSNFSNSADDIKSKKKREQSNDIARGF K S N I K S 1 0 2 2 0 0 0 0 0 1 0 1 0 1 0 3 0 0 0 0 0 0 11 0 1196.5309 P45973 P45973 92 102 CBX5 Chromobox protein homolog 5 yes yes 2 0.00013849 104.22 By MS/MS By MS/MS By MS/MS 1 1 1 0.75162 0.76856 29.963 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74425 0.70066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75162 0.76856 NaN 1 0 Median 1.481 1.2254 NaN 1 0 Median 42801000 23124000 19677000 0 0 0 0 0 0 6314100 3467500 2846600 0 0 0 31826000 17904000 13922000 4661100 1752400 2908700 31105 2331 32706 162666;162667;162668 163697;163698;163699;163700;163701;163702 163697 6 SNGALSTEEREEEMK ERGLRDLEEEIQMLKSNGALSTEEREEEMK SNGALSTEEREEEMKQMEVYRSHSKFMKNK K S N M K Q 1 1 1 0 0 0 5 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 15 1 1708.7574 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 410 424 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 0.017706 22.606 By MS/MS 1 1.4386 1.3825 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4386 1.3825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 898130 340860 557280 0 0 0 0 0 0 0 0 0 898130 340860 557280 0 0 0 0 0 0 31106 3311 32707 162669 163703 163703 1 SNIDALLSR SSELQAIKTELTQIKSNIDALLSRLEQIAA ELTQIKSNIDALLSRLEQIAAEQKANPDGK K S N S R L 1 1 1 1 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 987.53491 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 199 207 RALY RNA-binding protein Raly yes no 1;2 0.00091958 90.601 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 4 1.1313 0.94369 26.574 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95282 0.93408 NaN 1 0 Median 1.4805 1.2636 NaN 1 0 Median 0.85132 0.85216 4.6093 2 0 Median 1.191 0.95344 34.216 4 0 Median 214170000 105560000 108610000 0 0 0 0 0 0 8305300 4032100 4273200 5251300 2164800 3086500 158080000 79927000 78152000 42539000 19436000 23103000 31107 4313 32708 162670;162671;162672;162673;162674;162675;162676;162677 163704;163705;163706;163707;163708 163705 5 SNIHSSVMASPGGLSAVR KAITPKRLLTSITTKSNIHSSVMASPGGLS HSSVMASPGGLSAVRTSNFALVGSYTLSLS K S N V R T 2 1 1 0 0 0 0 2 1 1 1 0 1 0 1 5 0 0 0 2 0 0 18 0 1768.889 Q9NQW6;H7C3S1;H7C1C2 Q9NQW6 918 935 ANLN Actin-binding protein anillin yes no 2;3 1.337E-07 85.937 By MS/MS By MS/MS 2 2 1.3794 1.1437 42.598 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2018 1.3382 19.686 2 0 Median 0.95205 0.79657 48.633 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19306000 8831500 10474000 0 0 0 0 0 0 12559000 5963800 6595200 6746900 2867700 3879200 0 0 0 0 0 0 31108 4069 32709;32710 162678;162679;162680;162681 163709;163710 163710 1870 2 SNILLLGPTGSGK GEVLDSSHDDIKLEKSNILLLGPTGSGKTL EKSNILLLGPTGSGKTLLAQTLAKCLDVPF K S N G K T 0 0 1 0 0 0 0 3 0 1 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1255.7136 O76031 O76031 287 299 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 2 0.0011407 58.676 By MS/MS By matching By matching 1 1 1 1.0849 0.95257 13.695 3 Median 0.88296 0.84839 NaN 1 0 Median 1.0849 0.95257 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2988 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4947000 2344600 2602500 3708300 1793700 1914500 827200 403000 424190 0 0 0 411590 147850 263740 0 0 0 0 0 0 31109 1718 32711 162682;162683;162684 163711 163711 1 SNILSNEMK QKEKIHEDTKEINEKSNILSNEMKAKNKDV KEINEKSNILSNEMKAKNKDVKDTEKKLNK K S N M K A 0 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 9 0 1034.5066 Q9NTJ3;E9PD53;C9JR83 Q9NTJ3 355 363 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0032716 82.75 By MS/MS By MS/MS 1 2 0.86932 0.77186 85.564 3 Median NaN NaN NaN 0 0 Median 0.86932 0.77186 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.601 1.5415 107.02 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9949300 3579500 6369900 0 0 0 3497300 1629300 1868100 0 0 0 6452000 1950200 4501800 0 0 0 0 0 0 31110 4108 32712 162685;162686;162687 163712;163713 163712 2 SNINNFFEFSK KEQSLNVSQDLDTIRSNINNFFEFSKEVDE DTIRSNINNFFEFSKEVDEKSSLKTAVISI R S N S K E 0 0 3 0 0 0 1 0 0 1 0 1 0 3 0 2 0 0 0 0 0 0 11 0 1345.6303 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4986 4996 SYNE2 Nesprin-2 yes no 2 0.00018924 76.465 By MS/MS By matching 1 1 1.2437 1.2357 20.816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99056 1.0666 NaN 1 0 Median 1.5615 1.4317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5088800 2374600 2714200 0 0 0 0 0 0 4733300 2234900 2498400 355490 139710 215780 0 0 0 0 0 0 31111 3521 32713 162688;162689 163714 163714 1 SNIVTSINFSK KQATLIPDEVFDAVKSNIVTSINFSKNQLC DAVKSNIVTSINFSKNQLCEIPKRMVELKE K S N S K N 0 0 2 0 0 0 0 0 0 2 0 1 0 1 0 3 1 0 0 1 0 0 11 0 1208.6401 Q9H9A6 Q9H9A6 424 434 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 2 0.025561 51.092 By MS/MS 1 0.72833 0.76549 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72833 0.76549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5366300 3316200 2050100 0 0 0 0 0 0 5366300 3316200 2050100 0 0 0 0 0 0 0 0 0 31112 3996 32714 162690 163715 163715 1 SNIVTVGDVEEINK TELADWLVLIDQMLKSNIVTVGDVEEINKT KSNIVTVGDVEEINKTVSRMKITKADLEQR K S N N K T 0 0 2 1 0 0 2 1 0 2 0 1 0 0 0 1 1 0 0 3 0 0 14 0 1515.7781 P46939 P46939 2251 2264 UTRN Utrophin yes yes 2 3.5788E-05 95.018 By MS/MS 2 1.004 1.006 6.8298 2 Median 1.004 1.006 6.8298 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24107000 11472000 12635000 24107000 11472000 12635000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31113 2349 32715 162691;162692 163716;163717 163717 2 SNIWLAAVTK PVTNIARTSFFHVKRSNIWLAAVTKQNVNA FHVKRSNIWLAAVTKQNVNAAMVFEFLYKM R S N T K Q 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 1 0 0 10 0 1101.6182 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8;C9JJD3;C9JPV8 A0A087WY71 61 70 AP2M1 AP-2 complex subunit mu yes no 2 0.020397 37.065 By matching By MS/MS By matching By matching 1 1 2 1 1.2432 1.1634 8.8934 5 Median 1.2432 1.1861 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1787 1.1429 NaN 1 0 Median 1.3649 1.2076 17.124 2 0 Median NaN NaN NaN 0 0 Median 1.3531 1.1634 NaN 1 0 Median 15278000 6327400 8950800 3382600 878130 2504500 0 0 0 10201000 4721700 5479000 1552000 664390 887560 0 0 0 142900 63192 79705 31114 78 32716 162693;162694;162695;162696;162697 163718 163718 1 SNKEIMEHIR YLDSGEQVLVDVETKSNKEIMEHIRKILGK DVETKSNKEIMEHIRKILGKNEETLREEEE K S N I R K 0 1 1 0 0 0 2 0 1 2 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1255.6343 P82663;E7EPW2 P82663 94 103 MRPS25 28S ribosomal protein S25, mitochondrial yes no 3 0.0013295 54.198 By MS/MS By MS/MS By matching 2 1 1 1.2592 1.3034 11.982 4 Median 1.1803 1.2062 16.844 2 0 Median 1.5849 1.3983 NaN 1 0 Median 1.2287 1.2504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5737800 2303300 3434500 3481600 1418900 2062800 1887200 721010 1166200 368950 163410 205540 0 0 0 0 0 0 0 0 0 31115 2651 32717 162698;162699;162700;162701 163719;163720;163721 163721 3 SNKPIILR SKKIVQLKPRNPDYRSNKPIILRALCDYKQ PRNPDYRSNKPIILRALCDYKQDQKIVHKG R S N L R A 0 1 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 8 1 939.58655 P15924 P15924 457 464 DSP Desmoplakin yes yes 2 0.044705 60.799 By matching By matching By matching By MS/MS 1 2 1 2 0.75394 0.72821 29.768 6 Median NaN NaN NaN 0 0 Median 0.77742 0.75126 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6234 0.59115 25.08 2 0 Median 0.51207 0.58153 NaN 1 0 Median 1.1329 0.9997 20.227 2 0 Median 9885700 5275700 4610000 0 0 0 1678100 982900 695150 0 0 0 752380 429970 322400 2130500 1337700 792810 5324800 2525100 2799600 31116 2021 32718 162702;162703;162704;162705;162706;162707 163722 163722 1 SNKQNLFLGSLTSR RLEQEEQQRLAELSKSNKQNLFLGSLTSRL KSNKQNLFLGSLTSRLWPRSKQP_______ K S N S R L 0 1 2 0 0 1 0 1 0 0 3 1 0 1 0 3 1 0 0 0 0 0 14 1 1563.8369 Q3ZCQ8;M0R0C3;M0R2F8 Q3ZCQ8 332 345 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2;3 5.8294E-38 160.52 By MS/MS By matching 2 1 1.1264 1.2117 37.945 2 Median 0.86465 0.92652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4674 1.5845 NaN 1 0 Median NaN NaN NaN 0 0 Median 16118000 8178900 7938800 13727000 7141200 6586000 0 0 0 0 0 0 0 0 0 2390500 1037600 1352800 0 0 0 31117 3016 32719 162708;162709;162710 163723;163724;163725 163725 3 SNLAYDIVQLPTGLTGIK FHGRAFSDPFVEAEKSNLAYDIVQLPTGLT AYDIVQLPTGLTGIKVTYMEEERNFTTEQV K S N I K V 1 0 1 1 0 1 0 2 0 2 3 1 0 0 1 1 2 0 1 1 0 0 18 0 1902.0462 P34932;A0A087WYC1;A0A087WTS8 P34932 85 102 HSPA4 Heat shock 70 kDa protein 4 yes no 2;3 8.1927E-14 134.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 3 2 1 1.0475 1.0001 20.01 16 Median 1.054 1.0167 21.648 6 0 Median 1.0102 0.8778 6.4171 4 1 Median 1.0681 1.1719 30.977 3 0 Median 1.1061 0.94848 8.1377 2 0 Median 1.0635 1.0915 NaN 1 0 Median NaN NaN NaN 0 0 Median 60523000 28801000 31722000 35037000 16251000 18786000 16126000 8013500 8112700 7366000 3574900 3791200 1101800 514530 587260 892050 446950 445100 0 0 0 31118 2230 32720 162711;162712;162713;162714;162715;162716;162717;162718;162719;162720;162721;162722;162723;162724;162725;162726 163726;163727;163728;163729;163730;163731;163732;163733;163734;163735;163736;163737;163738;163739;163740 163728 15 SNLELFKEELK TKKPPLKKGEKEKKKSNLELFKEELKQIQE EKKKSNLELFKEELKQIQEERDERHKTKGR K S N L K Q 0 0 1 0 0 0 3 0 0 0 3 2 0 1 0 1 0 0 0 0 0 0 11 1 1348.7238 O15042;E7ET15;H0Y8D9;E7EW00 O15042 202 212 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.00042255 150.1 By MS/MS By matching By MS/MS 1 1 2 0.86953 0.96347 10.396 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92439 1.0684 NaN 1 0 Median 1.0954 1.0434 NaN 1 0 Median 0.80588 0.88281 1.0884 2 1 Median NaN NaN NaN 0 0 Median 20978000 11568000 9410100 0 0 0 0 0 0 10222000 5386000 4836000 1134600 541430 593170 9621200 5640200 3981000 0 0 0 31119 1515 32721 162727;162728;162729;162730 163741;163742;163743;163744 163741 4 SNLENIDFK TLGLPITDEQIQEMKSNLENIDFKMAAEEE QIQEMKSNLENIDFKMAAEEEKRLRHDVMA K S N F K M 0 0 2 1 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1078.5295 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;B4DEP1;A0A096LP72;A0A096LNY4 A0A1B0GWJ0 67 75 ADSL Adenylosuccinate lyase yes no 2 0.0071404 76.827 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31120 200 32722 162731 163745 163745 1 SNLGSVVLQLK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI EILRSNLGSVVLQLKKLGIDDLVHFDFMDP R S N L K K 0 0 1 0 0 1 0 1 0 0 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1156.6816 O43143 O43143 505 515 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00016408 91.087 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 4 2 1.0995 1.0698 21.196 14 Median 1.1126 1.0527 18.772 2 0 Median 0.89296 0.76573 22.565 2 0 Median 1.2211 1.3124 13.319 2 0 Median 1.0499 0.9262 31.678 2 0 Median 1.1 1.1018 3.612 4 0 Median 1.0704 0.8968 10.248 2 0 Median 91055000 42200000 48855000 32181000 14913000 17268000 5972400 2992400 2979900 18870000 8777200 10093000 285870 147150 138720 33489000 15236000 18253000 256530 133920 122610 31121 1553 32723 162732;162733;162734;162735;162736;162737;162738;162739;162740;162741;162742;162743;162744;162745 163746;163747;163748;163749;163750;163751;163752;163753 163751 8 SNLGSVVLQLKK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI ILRSNLGSVVLQLKKLGIDDLVHFDFMDPP R S N K K L 0 0 1 0 0 1 0 1 0 0 3 2 0 0 0 2 0 0 0 2 0 0 12 1 1284.7765 O43143 O43143 505 516 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 0.00035267 84.213 By MS/MS By matching By matching By MS/MS By matching 2 1 2 9 3 1.1623 1.1872 20.381 17 Median 1.143 1.1785 11.722 2 0 Median 1.1237 1.0827 NaN 1 0 Median 1.1727 1.3415 17.282 2 0 Median NaN NaN NaN 0 0 Median 1.1623 1.344 25.3 9 1 Plateau 1.2894 1.1674 13.155 3 0 Median 50349000 23077000 27272000 10017000 4817200 5200100 405980 176700 229270 4761000 2162300 2598700 0 0 0 33993000 15437000 18556000 1171400 484160 687270 31122 1553 32724 162746;162747;162748;162749;162750;162751;162752;162753;162754;162755;162756;162757;162758;162759;162760;162761;162762 163754;163755;163756;163757;163758;163759;163760;163761 163756 8 SNLHAMIK EGYQNTIVAGSLITKSNLHAMIKAEESSKQ AGSLITKSNLHAMIKAEESSKQEECTTTST K S N I K A 1 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 0 8 0 912.48512 O75400;A0A3F2YNY6;F5H578 O75400 234 241 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.0046696 80.229 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.1026 0.99873 19.846 6 Median NaN NaN NaN 0 0 Median 0.9715 0.83423 NaN 1 0 Median 1.1026 1.1672 3.7276 2 0 Median 1.167 0.99274 NaN 1 0 Median 0.67449 0.70388 NaN 1 0 Median 1.2116 1.0048 NaN 1 0 Median 12326000 6346700 5979600 0 0 0 1272700 669920 602800 6748600 3582600 3165900 2207000 1039000 1168000 939070 585800 353270 1158900 469390 689530 31123 1670 32725 162763;162764;162765;162766;162767;162768 163762;163763;163764;163765;163766 163763 5 SNLKEVLNAVK LVLQRLATSVLKDEKSNLKEVLNAVKELEL KDEKSNLKEVLNAVKELELAHRYFSYLSKV K S N V K E 1 0 2 0 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 2 0 0 11 1 1213.703 Q6PD62 Q6PD62 774 784 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.0023354 68.557 By MS/MS 1 1.0148 1.1686 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0148 1.1686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7050200 3497500 3552700 0 0 0 0 0 0 7050200 3497500 3552700 0 0 0 0 0 0 0 0 0 31124 3168 32726 162769 163767 163767 1 SNLLWDTGVFR SYTWLCYEVKIKRGRSNLLWDTGVFRGQVY KRGRSNLLWDTGVFRGQVYFKPQYHAEMCF R S N F R G 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 1 1 0 1 0 0 11 0 1306.667 B0QYD3;Q9UH17 B0QYD3 46 56 APOBEC3B DNA dC->dU-editing enzyme APOBEC-3B no no 2 0.0068238 43.512 By matching By matching By MS/MS By matching 1 1 3 2 1.3749 1.1729 26.319 7 Median NaN NaN NaN 0 0 Median 1.4276 1.2154 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3749 1.1729 NaN 1 0 Median 1.1592 1.2408 34.451 3 0 Plateau 1.5628 1.3101 21.541 2 0 Median 4985700 2107200 2878400 0 0 0 796450 281910 514540 0 0 0 60287 21564 38723 2846600 1279200 1567400 1282300 524620 757730 31125 555 32727 162770;162771;162772;162773;162774;162775;162776 163768;163769 163768 2 SNLMDAISFVLGEK FQRFTAIIGPNGSGKSNLMDAISFVLGEKT KSNLMDAISFVLGEKTSNLRVKTLRDLIHG K S N E K T 1 0 1 1 0 0 1 1 0 1 2 1 1 1 0 2 0 0 0 1 0 0 14 0 1522.7701 Q14683;G8JLG1;H0Y7K8 Q14683 39 52 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.011177 33.409 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1.0774 1.0602 20.563 6 Median 1.1928 1.1202 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91211 0.97397 NaN 1 0 Median 1.3688 1.2398 NaN 1 0 Median 0.97313 1.0034 NaN 1 0 Median 1.0528 0.88121 34.653 2 0 Median 17824000 9099400 8724700 1535100 694700 840370 0 0 0 12919000 6709300 6209500 89476 34811 54666 2141100 1025000 1116100 1139600 635550 504060 31126 2889 32728 162777;162778;162779;162780;162781;162782 163770;163771 163770 2 SNLMVATGDLAIR LLFTMLEKSPLPIVRSNLMVATGDLAIRFP VRSNLMVATGDLAIRFPNLVDPWTPHLYAR R S N I R F 2 1 1 1 0 0 0 1 0 1 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1359.718 Q15021 Q15021 1073 1085 NCAPD2 Condensin complex subunit 1 yes yes 2 0.00032158 77.062 By MS/MS By matching By MS/MS 1 1 1 1.0245 0.967 18.275 3 Plateau 1.0245 0.967 NaN 1 0 Median 0.9466 0.81604 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76369 0.67115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9042800 4461700 4581100 6817200 3332500 3484700 1595800 773570 822190 0 0 0 629840 355680 274160 0 0 0 0 0 0 31127 2915 32729 162783;162784;162785 163772;163773;163774 163772 3 SNLNSLDEQEGVK SPGDEVWGVVWKMNKSNLNSLDEQEGVKSG NKSNLNSLDEQEGVKSGMYVVIEVKVATQE K S N V K S 0 0 2 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1431.6842 O75223;M0QZK8;B8ZZK2;H7BZK5 O75223 89 101 GGCT Gamma-glutamylcyclotransferase yes no 2 4.6463E-16 192.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 1.1149 0.95507 13.923 3 Median 1.0333 0.95507 NaN 1 0 Median 1.1149 0.9346 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3948 1.2016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51722000 25715000 26007000 41581000 20762000 20818000 7883900 3487100 4396700 0 0 0 2257100 1465700 791460 0 0 0 0 0 0 31128 1656 32730 162786;162787;162788;162789;162790;162791 163775;163776;163777;163778;163779;163780;163781 163776 7 SNLPDNLKK DMAIFITMNPGYAGRSNLPDNLKKLFRSLA PGYAGRSNLPDNLKKLFRSLAMTKPDRQLI R S N K K L 0 0 2 1 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 9 1 1027.5662 Q14204;A0A2R8YFZ7 Q14204 2026 2034 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.061372 32.841 By matching By matching By MS/MS By matching 1 1 2 1 1.06 1.1132 15.366 5 Median 0.98084 1.0587 NaN 1 0 Median 1.1704 1.1132 NaN 1 0 Median 0.86654 0.97269 26.72 2 0 Median 1.2158 1.1474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5563000 2610200 2952800 833230 418930 414300 2774600 1152800 1621800 1429500 801760 627710 525680 236680 289000 0 0 0 0 0 0 31129 2865 32731 162792;162793;162794;162795;162796 163782 163782 1 SNLTGSGSINIVGTPLAVR TIPATQLAQCQLQTKSNLTGSGSINIVGTP GSGSINIVGTPLAVRALTPVSIAHGTPVMR K S N V R A 1 1 2 0 0 0 0 3 0 2 2 0 0 0 1 3 2 0 0 2 0 0 19 0 1855.0163 Q15723 Q15723 476 494 ELF2 ETS-related transcription factor Elf-2 yes yes 2 0.00013036 42.209 By MS/MS By matching 1 1 0.66364 0.64024 9.638 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55913 0.59806 NaN 1 0 Median 0.78768 0.68539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2515700 1616100 899590 0 0 0 0 0 0 2385900 1549300 836640 129780 66825 62953 0 0 0 0 0 0 31130 2965 32732 162797;162798 163783 163783 1 SNLVDNTNQVEVLQR KEDRAAQSLLNKLIRSNLVDNTNQVEVLQR SNLVDNTNQVEVLQRDPNSPLYSVKSFEEL R S N Q R D 0 1 3 1 0 2 1 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 15 0 1727.8802 H3BQK0;Q9UMR2;H3BN59;H3BMQ5;Q9NUU7;I3L0H8;F6QDS0;H3BTB3 Q9NUU7 67 81 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 9.382E-36 213.16 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.1627 1.0827 7.5947 6 Median 1.1336 1.0736 NaN 1 0 Median 1.1875 1.0098 11.07 2 0 Median 1.1512 1.1383 4.2697 2 0 Median 1.2252 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97225000 43729000 53496000 19182000 8014700 11168000 7111100 3222900 3888200 62274000 28542000 33732000 8657200 3949500 4707700 0 0 0 0 0 0 31131 4121;1225 32733 162799;162800;162801;162802;162803;162804 163784;163785;163786;163787;163788;163789;163790 163786 6 SNLVDNTNQVEVLQRDPNSPLYSVK KEDRAAQSLLNKLIRSNLVDNTNQVEVLQR EVLQRDPNSPLYSVKSFEELRLKPQLLQGV R S N V K S 0 1 4 2 0 2 1 0 0 0 3 1 0 0 2 3 1 0 1 4 0 0 25 1 2828.4305 H3BQK0;Q9UMR2;H3BN59;H3BMQ5;Q9NUU7;I3L0H8;F6QDS0;H3BTB3 Q9NUU7 67 91 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 3 0.0034319 24.459 By MS/MS By matching 2 1 0.79744 0.82281 8.7523 3 Median 0.7902 0.8031 3.4281 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8704 0.92903 NaN 1 0 Median NaN NaN NaN 0 0 Median 10794000 5711300 5082600 9612100 5105300 4506800 0 0 0 0 0 0 0 0 0 1181800 605990 575790 0 0 0 31132 4121;1225 32734 162805;162806;162807 163791;163792 163791 2 SNLVGMGVIPLEYLPGENADALGLTGQER GIKAVLAESYERIHRSNLVGMGVIPLEYLP PGENADALGLTGQERYTIIIPENLKPQMKV R S N E R Y 2 1 2 1 0 1 3 5 0 1 5 0 1 0 2 1 1 0 1 2 0 0 29 0 3012.5226 P21399 P21399 806 834 ACO1 Cytoplasmic aconitate hydratase yes yes 3 0.042949 10.238 By MS/MS 2 0.64631 0.64444 10.854 2 Median 0.64631 0.64444 10.854 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1959200 1149900 809230 1959200 1149900 809230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31133 2090 32735 162808;162809 163793;163794 163793 2 SNLYIAESTSGR EAQDMAVRDHNVEFRSNLYIAESTSGRGQC EFRSNLYIAESTSGRGQCLKRIRYHGRGRF R S N G R G 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 3 1 0 1 0 0 0 12 0 1296.631 J3KQY1;E7ESL0;Q9NWU5 J3KQY1 158 169 MRPL22 39S ribosomal protein L22, mitochondrial yes no 2 7.6089E-05 102.53 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.4555 1.2067 18.762 5 Median 0.97834 0.92652 NaN 1 0 Median 1.4555 1.2067 NaN 1 0 Median 1.5145 1.455 0.5084 2 2 Median 1.3966 1.1561 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43938000 17167000 26770000 8252800 3807000 4445800 8717200 3525400 5191700 24938000 8979800 15958000 2029500 854940 1174500 0 0 0 0 0 0 31134 887 32736 162810;162811;162812;162813;162814;162815 163795;163796;163797;163798;163799;163800;163801;163802 163796 8 SNMDNMFESYINNLR LETKWSLLQQQKTARSNMDNMFESYINNLR SNMDNMFESYINNLRRQLETLGQEKLKLEA R S N L R R 0 1 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 15 0 1846.7978 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 134 148 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 2.4662E-20 192.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 6 14 8 10 8 1.1978 1.1477 21.032 53 Median 1.1293 1.1143 38.74 7 0 Median 1.4693 1.2921 21.598 6 0 Median 1.1514 1.1456 6.7791 14 0 Median 1.337 1.166 15.991 8 0 Median 1.2411 1.2821 13.248 10 2 Median 1.1355 0.95312 7.7465 8 0 Median 385480000 171360000 214130000 25335000 11714000 13621000 14236000 5880600 8355900 298530000 133550000 164980000 15507000 6706700 8800500 27172000 11426000 15746000 4704200 2076400 2627800 + 31135 750 32737;32738;32739 162816;162817;162818;162819;162820;162821;162822;162823;162824;162825;162826;162827;162828;162829;162830;162831;162832;162833;162834;162835;162836;162837;162838;162839;162840;162841;162842;162843;162844;162845;162846;162847;162848;162849;162850;162851;162852;162853;162854;162855;162856;162857;162858;162859;162860;162861;162862;162863;162864;162865;162866;162867;162868 163803;163804;163805;163806;163807;163808;163809;163810;163811;163812;163813;163814;163815;163816;163817;163818;163819;163820;163821;163822;163823;163824;163825;163826;163827;163828;163829;163830;163831;163832;163833;163834;163835;163836;163837;163838;163839;163840;163841;163842;163843;163844;163845;163846;163847 163826 275;276 45 SNMDNMFESYINNLRR LETKWSLLQQQKTARSNMDNMFESYINNLR NMDNMFESYINNLRRQLETLGQEKLKLEAE R S N R R Q 0 2 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 16 1 2002.8989 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67 P05787 134 149 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 4.7344E-11 111.74 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 8 5 8 10 19 8 1.3597 1.3695 24.733 58 Median 1.1568 1.172 39.484 8 0 Median 1.3709 1.2363 37.607 5 0 Median 1.3293 1.4375 8.5232 8 0 Median 1.4651 1.345 8.9029 10 0 Median 1.4167 1.5423 13.784 19 1 Median 1.1703 1.0177 14.828 8 0 Median 513830000 221820000 292000000 77849000 34549000 43300000 3185000 1373500 1811500 142590000 60481000 82107000 21064000 8512100 12552000 235740000 102010000 133740000 33396000 14903000 18493000 + 31136 750 32740;32741;32742 162869;162870;162871;162872;162873;162874;162875;162876;162877;162878;162879;162880;162881;162882;162883;162884;162885;162886;162887;162888;162889;162890;162891;162892;162893;162894;162895;162896;162897;162898;162899;162900;162901;162902;162903;162904;162905;162906;162907;162908;162909;162910;162911;162912;162913;162914;162915;162916;162917;162918;162919;162920;162921;162922;162923;162924;162925;162926 163848;163849;163850;163851;163852;163853;163854;163855;163856;163857;163858;163859;163860;163861;163862;163863;163864;163865;163866;163867;163868;163869 163863 275;276 22 SNMFFGLTPLYGVR GSFKRRYPRRSARARSNMFFGLTPLYGVRS RSNMFFGLTPLYGVRSYGEEDIPFYSSSTG R S N V R S 0 1 1 0 0 0 0 2 0 0 2 0 1 2 1 1 1 0 1 1 0 0 14 0 1600.8072 Q03164 Q03164 2625 2638 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 2 0.0047413 45.359 By MS/MS 2 0.65846 0.73845 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65846 0.73845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1560100 1001600 558510 0 0 0 0 0 0 1560100 1001600 558510 0 0 0 0 0 0 0 0 0 31137 2708 32743;32744 162927;162928 163870;163871 163870 1393 2 SNMGHPEPASGLAALAK LCATRQEPLLIGSTKSNMGHPEPASGLAAL MGHPEPASGLAALAKVLLSLEHGLWAPNLH K S N A K V 4 0 1 0 0 0 1 2 1 0 2 1 1 0 2 2 0 0 0 0 0 0 17 0 1649.8195 P49327;A0A0U1RQF0 P49327 327 343 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 5.5087E-10 90.926 By MS/MS By MS/MS 8 6 0.74056 0.69455 68.555 12 Median 0.69751 0.66676 16.062 7 5 Median 0.87118 0.77139 109.56 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 286580000 174510000 112070000 173320000 97667000 75651000 113260000 76847000 36415000 0 0 0 0 0 0 0 0 0 0 0 0 31138 2377 32745;32746 162929;162930;162931;162932;162933;162934;162935;162936;162937;162938;162939;162940;162941;162942 163872;163873;163874;163875;163876;163877;163878;163879;163880;163881;163882;163883;163884;163885;163886;163887;163888;163889;163890 163887 1092 19 SNMHFTSSSTGGLSSSQSSYSPSNR MFHPGRGLGGPRARRSNMHFTSSSTGGLSS GGLSSSQSSYSPSNREAMDPIA________ R S N N R E 0 1 2 0 0 1 0 2 1 0 1 0 1 1 1 11 2 0 1 0 0 0 25 0 2592.1147 C9J3I2;Q9P0J7 C9J3I2 118 142 KCMF1 E3 ubiquitin-protein ligase KCMF1 yes no 3 1.5516E-05 35.94 By MS/MS 1 0.62521 0.62144 NaN 1 Median 0.62521 0.62144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3768200 2479400 1288800 3768200 2479400 1288800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31139 674 32747 162943 163891 163891 1 SNNIINETTTR KDKEKVEEFKSIPAKSNNIINETTTRNNAL IPAKSNNIINETTTRNNALEKEKEKEEKKL K S N T R N 0 1 3 0 0 0 1 0 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q9NTJ3;E9PD53 Q9NTJ3 435 445 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 7.8381E-05 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.1205 1.0531 20.401 6 Median 1.2678 1.198 NaN 1 1 Median 0.98771 0.83653 19.325 2 0 Median 1.0315 1.1333 NaN 1 0 Median 1.1131 0.97857 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5452 1.2869 NaN 1 0 Median 23311000 10891000 12420000 6227700 2791600 3436100 8649400 4153100 4496300 3360500 1485300 1875200 3209000 1528900 1680100 0 0 0 1864000 931780 932200 31140 4108 32748 162944;162945;162946;162947;162948;162949 163892;163893;163894;163895;163896;163897;163898;163899;163900;163901 163892 10 SNNKENITIVDISR ______________________________ KSNNKENITIVDISRKINQLPEAERNLLEN K S N S R K 0 1 3 1 0 0 1 0 0 3 0 1 0 0 0 2 1 0 0 1 0 0 14 1 1601.8373 Q9H061;E9PI90;E9PIH8 Q9H061 6 19 TMEM126A Transmembrane protein 126A yes no 2;3 2.5337E-07 103.44 By MS/MS By MS/MS By matching 2 2 1 1.2688 1.1541 28.731 5 Median 1.1618 1.1486 0.67724 2 0 Median 1.8935 1.6706 38.522 2 1 Median NaN NaN NaN 0 0 Median 1.2688 1.1035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23073000 10478000 12596000 16741000 8611100 8129600 5576700 1595200 3981500 0 0 0 755940 271290 484650 0 0 0 0 0 0 31141 3918 32749 162950;162951;162952;162953;162954 163902;163903;163904;163905 163903 4 SNNVEMDWVLK KDRETMGHRYVEVFKSNNVEMDWVLKHTGP EVFKSNNVEMDWVLKHTGPNSPDTANDGFV K S N L K H 0 0 2 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 2 0 0 11 0 1333.6336 P31943;G8JLB6;E9PCY7;D6RBM0;D6RIU0;D6RIT2;D6R9T0;D6RFM3;D6RAM1;D6RDU3;D6RJ04;D6RIH9;E7EQJ0;E5RGV0;E5RGH4;H0YAQ2 P31943 88 98 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2 0.00014645 100.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 9 5 1.1019 1.0373 28.554 24 Median 1.0168 0.96043 9.4844 2 0 Median 1.2678 1.0821 12.108 2 0 Median 1.0486 1.0169 73.173 4 3 Median 1.2431 1.0926 2.2992 2 0 Median 1.0115 1.0114 11.637 9 1 Median 1.3254 1.0955 7.3616 5 0 Median 519090000 257700000 261390000 12249000 5801500 6447200 10664000 4821200 5842700 161690000 91944000 69746000 22153000 9866500 12286000 283500000 134250000 149240000 28835000 11010000 17825000 31142 1136 32750;32751 162955;162956;162957;162958;162959;162960;162961;162962;162963;162964;162965;162966;162967;162968;162969;162970;162971;162972;162973;162974;162975;162976;162977;162978 163906;163907;163908;163909;163910;163911;163912;163913;163914;163915;163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926;163927;163928;163929;163930;163931 163919 381 26 SNPDQPAVILLLR GRISEAETLCTKNLKSNPDQPAVILLLRQV LKSNPDQPAVILLLRQVQCKPLLESQKPLP K S N L R Q 1 1 1 1 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 1 0 0 13 0 1434.8195 Q6PGP7 Q6PGP7 1355 1367 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 5.9223E-05 86.624 By MS/MS By MS/MS By matching 1 1 1 1.0776 0.93045 19.196 3 Median 0.71337 0.67192 NaN 1 0 Median 1.1062 0.93045 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0776 0.9431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10182000 5339900 4842100 8019100 4319400 3699700 1910300 886820 1023400 0 0 0 252580 133650 118930 0 0 0 0 0 0 31143 3169 32752 162979;162980;162981 163932;163933;163934 163932 3 SNPEDQILYQTER ______________________________ LRSNPEDQILYQTERYNEETFGYEVPIKEE R S N E R Y 0 1 1 1 0 2 2 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 13 0 1591.7478 F5H1S8;Q14165;F5GX14 F5H1S8 8 20 MLEC Malectin yes no 2 8.3164E-07 101.93 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 3 1 1 0.96585 0.92287 15.002 12 Median 0.82066 0.79117 5.9676 4 4 Median 1.1899 1.0084 0.78886 3 2 Median 0.88771 0.86783 10.815 3 2 Median 1.1766 0.9814 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3796 1.2162 NaN 1 0 Median 62283000 31712000 30571000 25425000 13120000 12305000 13330000 6062400 7267800 21216000 11500000 9716300 1967500 898530 1068900 0 0 0 344650 131320 213330 31144 1021 32753 162982;162983;162984;162985;162986;162987;162988;162989;162990;162991;162992;162993 163935;163936;163937;163938;163939;163940;163941;163942;163943;163944;163945;163946;163947;163948 163939 14 SNPEIQDFMR YLHLGGDEVDFTCWKSNPEIQDFMRKKGFG FTCWKSNPEIQDFMRKKGFGEDFKQLESFY K S N M R K 0 1 1 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 10 0 1235.5605 H3BS10;H3BP20;P06865;H3BU85;H3BTD4 H3BS10 331 340 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.00036818 87.476 By MS/MS 1 0.76606 0.75338 NaN 1 Median 0.76606 0.75338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4830600 2812700 2017800 4830600 2812700 2017800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31145 1218 32754 162994 163949 163949 1 SNPGDFTLSVR LTRGVDGSFLARPSKSNPGDFTLSVRRNGA RPSKSNPGDFTLSVRRNGAVTHIKIQNTGD K S N V R R 0 1 1 1 0 0 0 1 0 0 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1191.5884 Q06124;A0A1W2PPU4 Q06124 36 46 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.00016921 79.974 By MS/MS By MS/MS By matching 1 2 1 0.83507 0.75616 50.831 4 Median 0.7872 0.74585 NaN 1 0 Median 1.4344 1.262 70.5 2 0 Median 0.71248 0.74376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28458000 15472000 12985000 14810000 8189400 6620700 8184600 4471600 3713000 5462900 2811300 2651600 0 0 0 0 0 0 0 0 0 31146 2721 32755 162995;162996;162997;162998 163950;163951;163952;163953 163951 4 SNPQLMAAFIK PSSPQQQQQVLNILKSNPQLMAAFIKQRTA NILKSNPQLMAAFIKQRTAKYVANQPGMQP K S N I K Q 2 0 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 11 0 1218.6431 Q92793 Q92793 2092 2102 CREBBP CREB-binding protein yes yes 2 0.034503 47.198 By MS/MS 1 0.84677 0.94308 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84677 0.94308 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5137100 2621000 2516100 0 0 0 0 0 0 5137100 2621000 2516100 0 0 0 0 0 0 0 0 0 31147 3557 32756 162999 163954 163954 1 SNPQVYMDIK KAETQEGEPIAKKARSNPQVYMDIKIGNKP AKKARSNPQVYMDIKIGNKPAGRIQMLLRS R S N I K I 0 0 1 1 0 1 0 0 0 1 0 1 1 0 1 1 0 0 1 1 0 0 10 0 1193.5751 Q9UNP9;E9PKY5;E9PEQ6 Q9UNP9 138 147 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00037716 80.688 By MS/MS By MS/MS By MS/MS 1 1 1 0.69384 0.58342 95.267 3 Median 2.3641 2.1731 NaN 1 0 Median 0.69384 0.58342 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.4076 0.34114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36969000 20022000 16947000 13285000 4572300 8712400 9312200 5591800 3720400 0 0 0 14372000 9858400 4513700 0 0 0 0 0 0 31148 4347 32757 163000;163001;163002 163955;163956;163957 163955 3 SNPSENEEKEAQSQLIK GKLDEAEDDFKKVLKSNPSENEEKEAQSQL PSENEEKEAQSQLIKSDEMQRLRSQALNAF K S N I K S 1 0 2 0 0 2 4 0 0 1 1 2 0 0 1 3 0 0 0 0 0 0 17 1 1929.928 Q13217 Q13217 134 150 DNAJC3 DnaJ homolog subfamily C member 3 yes yes 3 0.00032157 38.261 By MS/MS 1 1.2382 1.2377 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2382 1.2377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2631300 989180 1642100 0 0 0 0 0 0 0 0 0 2631300 989180 1642100 0 0 0 0 0 0 31149 2797 32758 163003 163958;163959 163958 2 SNPSVLQGLLR QLVMLLDQINSTFVRSNPSVLQGLLRIIPY TFVRSNPSVLQGLLRIIPYLSFGEVEKMQI R S N L R I 0 1 1 0 0 1 0 1 0 0 3 0 0 0 1 2 0 0 0 1 0 0 11 0 1182.6721 Q5T4S7;X6R960 Q5T4S7 4608 4618 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.00019426 106.68 By MS/MS By MS/MS By matching 3 3 1 1.0028 0.85482 13.528 7 Median 1.0344 1.0447 9.3021 3 0 Median 1.032 0.82632 3.1929 3 0 Plateau NaN NaN NaN 0 0 Median 0.87227 0.75619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30042000 14554000 15488000 12445000 6338800 6106600 17509000 8171900 9337300 0 0 0 87735 43353 44382 0 0 0 0 0 0 31150 3089 32759 163004;163005;163006;163007;163008;163009;163010 163960;163961;163962 163960 3 SNPYYIVK KNDVMNLLESAGFSRSNPYYIVKQGKINQM ESAGFSRSNPYYIVKQGKINQMATAPDSQR R S N V K Q 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 8 0 982.51238 Q9UQE7 Q9UQE7 133 140 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.028839 60.709 By MS/MS 1 0.86969 0.92823 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86969 0.92823 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14763000 6974800 7787900 0 0 0 0 0 0 14763000 6974800 7787900 0 0 0 0 0 0 0 0 0 31151 4362 32760 163011 163963 163963 1 SNQQLENDLNLMDIK LDLMKMREEVITLIRSNQQLENDLNLMDIK SNQQLENDLNLMDIKIGLLVKNKITLQDVV R S N I K I 0 0 3 2 0 2 1 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 15 0 1773.8567 P46940;A0A0J9YXZ5;H0YLE8 P46940 902 916 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.4819E-11 168.94 By MS/MS By matching By MS/MS 3 3 1 1.1156 1.0676 19.295 7 Median 1.1156 1.0676 21.978 3 0 Median 1.0943 0.97008 19.68 3 0 Median 1.1913 1.3279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60624000 28006000 32617000 47623000 22035000 25588000 10301000 4741400 5559900 2699100 1229700 1469300 0 0 0 0 0 0 0 0 0 31152 2350 32761;32762 163012;163013;163014;163015;163016;163017;163018 163964;163965;163966;163967;163968 163966 1076 5 SNQQLVDIIEK FQGTKVFVMPNGMLKSNQQLVDIIEKVKPE GMLKSNQQLVDIIEKVKPEIRLLIEKCNTE K S N E K V 0 0 1 1 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 11 0 1285.6878 K9J957;P61289;K7ESG5;K7ENH2;B3KQ25;K7EMD0;K7EPX6;K7EKR3 K9J957 111 121 PSME3 Proteasome activator complex subunit 3 yes no 2 2.007E-05 98.048 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.2501 1.0818 21.927 7 Median 1.2501 1.1308 21.614 3 0 Plateau 1.2435 1.0437 5.0678 2 0 Median 1.6693 1.5816 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3889 1.1479 NaN 1 0 Median 151630000 59990000 91642000 98640000 43029000 55611000 41869000 12424000 29445000 4325900 1594000 2731900 0 0 0 0 0 0 6796400 2942000 3854400 31153 1403 32763 163019;163020;163021;163022;163023;163024;163025;163026 163969;163970;163971;163972 163972 4 SNQQNLGTIK TGTPYMLYKDSCNRKSNQQNLGTIKCSNLC SCNRKSNQQNLGTIKCSNLCTEIVEYTSKD K S N I K C 0 0 2 0 0 2 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 10 0 1101.5778 P23921;E9PL69 P23921 415 424 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 0.00056965 115.71 By MS/MS 1 1.0781 0.9429 NaN 1 Median NaN NaN NaN 0 0 Median 1.0781 0.9429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4591200 2177500 2413800 0 0 0 4591200 2177500 2413800 0 0 0 0 0 0 0 0 0 0 0 0 31154 2121 32764 163027 163973 163973 1 SNRDELELELAENR QFQMRRLKKQLADERSNRDELELELAENRK RSNRDELELELAENRKLLTEKDAQIAMMQQ R S N N R K 1 2 2 1 0 0 4 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 14 1 1686.8173 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 228 241 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 4.7053E-06 103.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.69432 0.62875 39.122 5 Median NaN NaN NaN 0 0 Median 0.9207 0.92976 NaN 1 0 Median 0.78496 0.9916 NaN 1 1 Median 0.69432 0.62875 NaN 1 1 Median 0.45075 0.48761 NaN 1 0 Median 0.44886 0.40577 NaN 1 0 Median 27773000 15121000 12652000 0 0 0 7267800 3641900 3625900 10651000 5445900 5205600 1352400 757920 594520 7794800 4724200 3070500 706680 551210 155470 31155 2905;77 32765 163028;163029;163030;163031;163032 163974;163975;163976;163977;163978 163975 5 SNRDELELELAENRK QFQMRRLKKQLADERSNRDELELELAENRK SNRDELELELAENRKLLTEKDAQIAMMQQR R S N R K L 1 2 2 1 0 0 4 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 15 2 1814.9123 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 228 242 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 1.5048E-09 119.65 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.0024 1.1136 41.721 9 Median NaN NaN NaN 0 0 Median 1.9105 2.1675 9.9213 2 2 Median 0.92285 1.109 0.59149 2 0 Median 1.6116 1.6143 8.3084 2 1 Median 1.0024 1.1002 31.074 3 0 Plateau NaN NaN NaN 0 0 Median 384690000 178580000 206120000 0 0 0 30390000 9961800 20428000 316920000 153600000 163320000 12357000 4828600 7527900 25025000 10180000 14845000 0 0 0 31156 2905;77 32766 163033;163034;163035;163036;163037;163038;163039;163040;163041 163979;163980;163981;163982;163983;163984;163985;163986;163987;163988;163989;163990;163991;163992;163993 163982 15 SNSAQLLVEAR VNFHWQVSEILDRYKSNSAQLLVEARVQPN DRYKSNSAQLLVEARVQPNPSKHVPTSHPP K S N A R V 2 1 1 0 0 1 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1186.6306 O95376;C9JZ71 O95376 111 121 ARIH2 E3 ubiquitin-protein ligase ARIH2 yes no 2 0.00014771 88.681 By MS/MS 1 0.86032 0.8495 NaN 1 Median 0.86032 0.8495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4395600 2241400 2154200 4395600 2241400 2154200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31157 1769 32767 163042 163994;163995 163994 2 SNSFVYLEPLPR EHQDAYHSANLVFSRSNSFVYLEPLPRELP FSRSNSFVYLEPLPRELPCGKTQTVQAHYV R S N P R E 0 1 1 0 0 0 1 0 0 0 2 0 0 1 2 2 0 0 1 1 0 0 12 0 1420.7351 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 455 466 yes yes 2 0.0021811 49.35 By MS/MS By MS/MS 3 1 0.29725 0.28602 219.76 4 Median 0.98249 0.93205 212.72 3 1 Median 0.06478 0.053765 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26416000 22237000 4179800 19545000 15603000 3941700 6871700 6633600 238080 0 0 0 0 0 0 0 0 0 0 0 0 + 31158 734 32768 163043;163044;163045;163046 163996;163997 163997 2 SNSLAFIK FISYNINIDIHYGVKSNSLAFIKRTPVIDA DIHYGVKSNSLAFIKRTPVIDADKPVSSQL K S N I K R 1 0 1 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 8 0 878.48617 Q14204 Q14204 113 120 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.004804 79.451 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.1873 1.0783 35.145 7 Median 0.97564 0.97629 NaN 1 0 Median 1.2988 1.1265 6.1898 2 0 Median 1.1623 1.193 14.858 2 0 Median 1.1873 1.1488 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5334 0.45928 NaN 1 0 Median 38404000 18482000 19922000 9033100 4479000 4554100 10207000 4842300 5365000 15866000 7494900 8371400 2761300 1321700 1439600 0 0 0 536140 344540 191600 31159 2865 32769 163047;163048;163049;163050;163051;163052;163053 163998;163999;164000;164001;164002 164001 5 SNSLAFIKR FISYNINIDIHYGVKSNSLAFIKRTPVIDA IHYGVKSNSLAFIKRTPVIDADKPVSSQLR K S N K R T 1 1 1 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 0 0 0 9 1 1034.5873 Q14204 Q14204 113 121 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0016528 84.568 By matching By MS/MS 1 1 0.95851 1.0467 45.118 2 Median 0.73928 0.7608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2427 1.4401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12800000 5419900 7380500 4611900 2496900 2115000 0 0 0 8188500 2922900 5265500 0 0 0 0 0 0 0 0 0 31160 2865 32770 163054;163055 164003;164004 164003 2 SNSLISIKR QKREEGWWVVIGDAKSNSLISIKRLTLQQK VIGDAKSNSLISIKRLTLQQKAKVKLDFVA K S N K R L 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 9 1 1016.5978 O75643 O75643 2073 2081 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.051499 66.692 By MS/MS By matching By matching 1 1 1 0.96986 0.85296 19.066 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96986 1.1617 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75367 0.85296 NaN 1 0 Median 0.92336 0.82022 NaN 1 0 Median 7440100 3756200 3684000 0 0 0 0 0 0 4401600 2166100 2235500 0 0 0 1048600 569080 479560 1989900 1021000 968900 31161 1688 32771 163056;163057;163058 164005 164005 0 SNSSFMSR PLDEAQRRKLDVSVKSNSSFMSRERELLGK KLDVSVKSNSSFMSRERELLGKVQLDLAET K S N S R E 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 4 0 0 0 0 0 0 8 0 914.39162 Q9BSJ8 Q9BSJ8 1061 1068 ESYT1 Extended synaptotagmin-1 yes yes 2 0.027049 41.448 By MS/MS By matching 1 1 1.1128 1.125 4.6499 2 Median NaN NaN NaN 0 0 Median 1.2721 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97344 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median 2498000 1076600 1421300 0 0 0 2183800 901970 1281800 0 0 0 0 0 0 314190 174640 139550 0 0 0 31162 3816 32772 163059;163060 164006 164006 1 SNSVEMDWVLK KDRETMGHRYVEVFKSNSVEMDWVLKHTGP EVFKSNSVEMDWVLKHTGPNSPDTANDGFV K S N L K H 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 2 0 1 0 2 0 0 11 0 1306.6227 P55795 P55795 88 98 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.00014645 88.496 By matching By MS/MS By matching By MS/MS By matching 1 2 2 4 2 1.366 1.1496 20.625 11 Median NaN NaN NaN 0 0 Median 1.2539 1.0916 NaN 1 0 Median 1.3734 1.4208 53.379 2 0 Median 1.4355 1.2668 1.1771 2 0 Median 1.1022 1.132 13.757 4 0 Median 1.3841 1.1489 0.083815 2 0 Median 64080000 31205000 32875000 0 0 0 1294700 551300 743410 27333000 13371000 13962000 3636000 1773800 1862200 29825000 14665000 15160000 1991600 844940 1146700 31163 2502 32773 163061;163062;163063;163064;163065;163066;163067;163068;163069;163070;163071 164007;164008;164009 164009 3 SNSVGIQDAFNDGSDSTFQK STPHSQIPPLPGMSRSNSVGIQDAFNDGSD IQDAFNDGSDSTFQKRNSMTPNPGYQPSMN R S N Q K R 1 0 2 3 0 2 0 2 0 1 0 1 0 2 0 4 1 0 0 1 0 0 20 0 2115.9345 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1182 1201 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 2.8068E-25 124.45 By MS/MS 2 0.79847 0.88409 6.0163 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79847 0.88409 6.0163 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17580000 9889200 7691100 0 0 0 0 0 0 17580000 9889200 7691100 0 0 0 0 0 0 0 0 0 31164 1480 32774 163072;163073 164010;164011 164010 2 SNSVGIQDAFNDGSDSTFQKR STPHSQIPPLPGMSRSNSVGIQDAFNDGSD QDAFNDGSDSTFQKRNSMTPNPGYQPSMNT R S N K R N 1 1 2 3 0 2 0 2 0 1 0 1 0 2 0 4 1 0 0 1 0 0 21 1 2272.0356 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1182 1202 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 6.7805E-26 139.74 By MS/MS By matching By MS/MS 2 1 1 1.1086 1.2916 19.449 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1086 1.2916 2.5372 2 0 Median 1.0075 0.97267 NaN 1 0 Median 1.3753 1.5563 NaN 1 0 Median NaN NaN NaN 0 0 Median 53793000 24382000 29411000 0 0 0 0 0 0 48012000 22583000 25429000 477040 218930 258120 5304400 1580700 3723700 0 0 0 31165 1480 32775 163074;163075;163076;163077 164012;164013 164012 2 SNTENLSQHFR KYQKAAEETNMEKKRSNTENLSQHFRKGTL EKKRSNTENLSQHFRKGTLTVLKKKWENPG R S N F R K 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1331.6218 Q9UHB6;F8VRN8;F8VVQ7;F8VTU2 Q9UHB6 55 65 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.00096639 61.65 By matching By matching By MS/MS 1 1 1 1.1202 1.0996 28.483 3 Median 1.1202 1.1336 NaN 1 0 Median 1.268 1.0996 NaN 1 0 Median 0.63664 0.68219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3998900 1887800 2111100 1052000 543570 508410 1321500 358070 963390 1625500 986180 639310 0 0 0 0 0 0 0 0 0 31166 4273 32776 163078;163079;163080 164014;164015 164014 2 SNTHEFVNLVK IRIEFVGQIELFNDKSNTHEFVNLVKELAL FNDKSNTHEFVNLVKELALPGELTQSRSYD K S N V K E 0 0 2 0 0 0 1 0 1 0 1 1 0 1 0 1 1 0 0 2 0 0 11 0 1286.6619 O75436;S4R3Q6 O75436 83 93 VPS26A Vacuolar protein sorting-associated protein 26A yes no 2;3 4.5818E-05 80.014 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.1489 1.0942 56.779 7 Median 0.90537 0.842 33.897 2 0 Median 1.7759 1.5138 27.508 2 0 Median 1.1367 1.0942 NaN 1 0 Median 1.0358 0.86637 NaN 1 0 Median 3.1986 3.7576 NaN 1 0 Median NaN NaN NaN 0 0 Median 55081000 21570000 33511000 19716000 8487600 11229000 32410000 11923000 20487000 1913200 843510 1069700 595650 238890 356760 445360 77317 368040 0 0 0 31167 1671 32777 163081;163082;163083;163084;163085;163086;163087 164016;164017;164018;164019;164020;164021 164020 6 SNTLPISLQSIR EAANGNLDFVLSFLKSNTLPISLQSIRSSL FLKSNTLPISLQSIRSSLLLGFRRSMNINL K S N I R S 0 1 1 0 0 1 0 0 0 2 2 0 0 0 1 3 1 0 0 0 0 0 12 0 1327.746 P42704 P42704 530 541 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 4.4121E-06 141.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1 1.3 1.1788 21.494 8 Median 0.99687 0.95763 NaN 1 0 Median 1.2457 1.0292 25.97 3 0 Median 1.2086 1.3291 NaN 1 0 Median 1.3568 1.158 NaN 1 0 Median 1.5263 1.6031 NaN 1 1 Median 1.4507 1.2 NaN 1 0 Median 104560000 48290000 56271000 54554000 26937000 27617000 37128000 16072000 21056000 8770700 3589300 5181400 963700 401990 561720 2770600 1132500 1638100 373530 156680 216840 31168 2315 32778 163088;163089;163090;163091;163092;163093;163094;163095 164022;164023;164024;164025;164026;164027;164028;164029 164023 8 SNTPILVDGK YTEGRAVLHVALRNRSNTPILVDGKDVMPE ALRNRSNTPILVDGKDVMPEVNKVLDKMKS R S N G K D 0 0 1 1 0 0 0 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1042.5659 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41 P06744 107 116 GPI Glucose-6-phosphate isomerase yes no 2 0.0024019 60.398 By matching By MS/MS 1 2 1.3904 1.178 46.639 3 Median 1.8836 1.885 NaN 1 0 Median 1.1093 0.93471 32.711 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29079000 11951000 17128000 5266800 1744300 3522500 23812000 10207000 13605000 0 0 0 0 0 0 0 0 0 0 0 0 31169 1875 32779 163096;163097;163098 164030;164031;164032 164032 3 SNTPILVDGKDVMPEVNK YTEGRAVLHVALRNRSNTPILVDGKDVMPE PILVDGKDVMPEVNKVLDKMKSFCQRVRSG R S N N K V 0 0 2 2 0 0 1 1 0 1 1 2 1 0 2 1 1 0 0 3 0 0 18 1 1955.0034 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ERC6;K7EP41 P06744 107 124 GPI Glucose-6-phosphate isomerase yes no 2;3 3.4283E-12 125.47 By MS/MS By matching 3 1 0.78629 0.73558 63.711 4 Median 0.78653 0.74147 26.363 3 1 Median 0.28625 0.25814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74064000 40638000 33425000 72086000 39306000 32780000 1977200 1332100 645080 0 0 0 0 0 0 0 0 0 0 0 0 31170 1875 32780 163099;163100;163101;163102 164033;164034;164035;164036;164037;164038;164039 164038 7 SNTSLLQQNLR KLTQNVDLLGLLKWRSNTSLLQQNLRQLMK LKWRSNTSLLQQNLRQLMKVDGGEVVKFLQ R S N L R Q 0 1 2 0 0 2 0 0 0 0 3 0 0 0 0 2 1 0 0 0 0 0 11 0 1272.6786 A0A096LNH6;Q14185 A0A096LNH6 648 658 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.0067336 66.962 By MS/MS By MS/MS 1 1 1.2757 1.1195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2757 1.1195 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1848500 841140 1007400 0 0 0 0 0 0 0 0 0 1848500 841140 1007400 0 0 0 0 0 0 31171 140 32781 163103;163104 164040;164041 164041 2 SNTSLPPLPFKR GDVVSTRDPVKSQSKSNTSLPPLPFKRGGG QSKSNTSLPPLPFKRGGGKDGSVTGTKRLR K S N K R G 0 1 1 0 0 0 0 0 0 0 2 1 0 1 3 2 1 0 0 0 0 0 12 1 1355.7561 P46013 P46013 2987 2998 MKI67 Antigen KI-67 yes yes 2;3 5.0904E-06 107.79 By MS/MS By matching 4 1 0.71839 0.81607 28.573 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74761 0.88029 32.969 4 0 Median NaN NaN NaN 0 0 Median 0.71839 0.81607 NaN 1 0 Median NaN NaN NaN 0 0 Median 37445000 22442000 15003000 0 0 0 0 0 0 35486000 21301000 14185000 0 0 0 1959100 1140900 818260 0 0 0 31172 2335 32782 163105;163106;163107;163108;163109 164042;164043;164044;164045 164044 4 SNTSPEELGPLANQLTSDYGR TAKAIAVTVQEMVTKSNTSPEELGPLANQL ELGPLANQLTSDYGRLASEAKPAAVAAENE K S N G R L 1 1 2 1 0 1 2 2 0 0 3 0 0 0 2 3 2 0 1 0 0 0 21 0 2248.0608 Q9Y490 Q9Y490 1875 1895 TLN1 Talin-1 yes yes 2 4.6009E-18 109.07 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.84787 0.75429 18.1 5 Median 0.68236 0.64394 NaN 1 0 Median 0.84537 0.74278 2.1746 2 0 Median 0.9462 1.0507 NaN 1 0 Median 0.91933 0.79749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9684300 5540300 4144000 6917500 4193800 2723800 414420 222400 192020 2187200 1032800 1154400 165220 91395 73828 0 0 0 0 0 0 31173 4441 32783 163110;163111;163112;163113;163114 164046;164047;164048;164049;164050 164048 5 SNTVVIMNMQGQIVR ILLPKNPEHFVVCNRSNTVVIMNMQGQIVR SNTVVIMNMQGQIVRSFSSGKREGGDFVCC R S N V R S 0 1 2 0 0 2 0 1 0 2 0 0 2 0 0 1 1 0 0 3 0 0 15 0 1688.8702 Q2TAY7 Q2TAY7 419 433 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 4.4345E-19 138.25 By MS/MS By MS/MS By MS/MS 5 3 3 1.1238 1.0692 19.139 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1238 1.1131 23.5 5 3 Median 1.1857 1.0176 7.7469 3 0 Median 1.0556 1.0231 12.742 3 0 Median NaN NaN NaN 0 0 Median 63695000 30056000 33639000 0 0 0 0 0 0 29969000 13680000 16289000 28218000 13682000 14536000 5507600 2693500 2814100 0 0 0 31174 3005 32784;32785 163115;163116;163117;163118;163119;163120;163121;163122;163123;163124;163125 164051;164052;164053;164054;164055;164056;164057;164058;164059;164060;164061 164056 1648;1649 11 SNVKPNSGELDPLYVVEVLLR GDDFGWGVVVNFSKKSNVKPNSGELDPLYV SGELDPLYVVEVLLRCSKESLKNSATEAAK K S N L R C 0 1 2 1 0 0 2 1 0 0 4 1 0 0 2 2 0 0 1 4 0 0 21 1 2340.2689 P42285 P42285 681 701 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.011119 20.814 By matching By matching By MS/MS By matching 1 1 2 1 0.75113 0.85745 8.4462 5 Median 0.8912 0.92006 NaN 1 0 Median 0.75113 0.73378 NaN 1 0 Median 0.75549 0.86532 1.2923 2 0 Median NaN NaN NaN 0 0 Median 0.74853 0.83399 NaN 1 0 Median NaN NaN NaN 0 0 Median 2268200 1225500 1042800 351830 173850 177980 123200 53929 69274 1348600 746320 602290 0 0 0 444600 251380 193220 0 0 0 31175 2309 32786 163126;163127;163128;163129;163130 164062;164063 164063 2 SNVLTGLQDSSTDNR KPKPLVVQVPTFARRSNVLTGLQDSSTDNR SNVLTGLQDSSTDNRAKLDLGAQGKGQGHQ R S N N R A 0 1 2 2 0 1 0 1 0 0 2 0 0 0 0 3 2 0 0 1 0 0 15 0 1605.7594 O00257 O00257 90 104 CBX4 E3 SUMO-protein ligase CBX4 yes yes 2 5.2839E-09 121.08 By MS/MS 1 1.0195 1.0555 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0195 1.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6210700 2925600 3285000 0 0 0 0 0 0 6210700 2925600 3285000 0 0 0 0 0 0 0 0 0 31176 1450 32787 163131 164064;164065 164064 2 SNVSDAVAQSTR QQAQEVHEKLRGWLKSNVSDAVAQSTRIIY WLKSNVSDAVAQSTRIIYGGSVTGATCKEL K S N T R I 2 1 1 1 0 1 0 0 0 0 0 0 0 0 0 3 1 0 0 2 0 0 12 0 1233.5949 P60174 P60174 232 243 TPI1 Triosephosphate isomerase yes yes 2 6.3692E-06 127.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 6 1 1 1 1.1197 0.9441 8.1849 12 Median 0.94402 0.92643 0.66263 3 0 Median 1.1556 0.97808 5.3038 6 1 Median 1.083 1.0398 NaN 1 0 Median 1.1229 0.93145 NaN 1 0 Median 1.2178 1.2108 NaN 1 0 Median NaN NaN NaN 0 0 Median 132780000 60081000 72702000 10854000 5270700 5583000 64049000 28181000 35868000 49300000 22527000 26773000 4004900 1822200 2182700 4575800 2280400 2295400 0 0 0 31177 2523 32788 163132;163133;163134;163135;163136;163137;163138;163139;163140;163141;163142;163143 164066;164067;164068;164069;164070;164071;164072;164073;164074;164075;164076;164077;164078;164079;164080;164081;164082;164083;164084;164085;164086;164087;164088;164089 164079 24 SNYNFEKPFLWLAR FHRKKNLQYYDISAKSNYNFEKPFLWLARK KSNYNFEKPFLWLARKLIGDPNLEFVAMPA K S N A R K 1 1 2 0 0 0 1 0 0 0 2 1 0 2 1 1 0 1 1 0 0 0 14 1 1783.9046 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 170 183 RAN GTP-binding nuclear protein Ran yes no 2;3 8.1943E-34 171.62 By MS/MS By matching By matching By matching By matching 8 2 4 1 1 0.96318 0.99885 9.8381 16 Median 0.97937 1.0232 4.5947 8 2 Median 0.91184 0.83098 8.0428 2 0 Median 0.96318 0.99885 12.183 4 0 Median 1.2129 1.0736 NaN 1 0 Median 0.88418 0.92422 NaN 1 0 Median NaN NaN NaN 0 0 Median 474640000 225690000 248950000 467970000 222420000 245550000 653520 298820 354700 5208600 2557500 2651100 439070 198980 240100 370410 214970 155440 0 0 0 31178 623 32789 163144;163145;163146;163147;163148;163149;163150;163151;163152;163153;163154;163155;163156;163157;163158;163159 164090;164091;164092;164093;164094;164095;164096;164097;164098;164099;164100;164101;164102;164103;164104 164094 15 SNYNLPMHK LDELYGTWRKAASLKSNYNLPMHKMINTDL KAASLKSNYNLPMHKMINTDLSRILKSPEI K S N H K M 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 9 0 1102.523 P36578;H3BM89 P36578 275 283 RPL4 60S ribosomal protein L4 yes no 2 0.0056277 57.047 By matching By matching By matching By MS/MS 1 1 1 1 0.75398 0.72256 41.704 4 Median 1.0885 1.008 NaN 1 0 Median 0.5091 0.4645 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53934 0.51913 NaN 1 0 Median 1.054 1.0057 NaN 1 0 Median NaN NaN NaN 0 0 Median 34377000 15754000 18623000 12974000 5357500 7616900 9917200 5273800 4643400 0 0 0 1865900 1093200 772640 9620000 4029500 5590500 0 0 0 31179 2260 32790 163160;163161;163162;163163 164105 164105 1 SPAAECLSEK DIVVDHYKEEKFEDRSPAAECLSEKETEEL KFEDRSPAAECLSEKETEELMAWMRNVLGS R S P E K E 2 0 0 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 10 0 1090.4965 I3L0K7;Q12931 Q12931 568 577 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.0056545 50.108 By MS/MS 1 1.3141 1.1235 NaN 1 Median NaN NaN NaN 0 0 Median 1.3141 1.1235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3911300 1804500 2106800 0 0 0 3911300 1804500 2106800 0 0 0 0 0 0 0 0 0 0 0 0 31180 2771;1269 32791 163164 164106;164107 164106 2 SPAFVQLAPLSSK GPLLGPSMAREPGGRSPAFVQLAPLSSKVR GRSPAFVQLAPLSSKVRLSSPSIKDLPAGR R S P S K V 2 0 0 0 0 1 0 0 0 0 2 1 0 1 2 3 0 0 0 1 0 0 13 0 1343.7449 A6NEM2;P51610 A6NEM2 1205 1217 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 1.2439E-05 156.51 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 1 1 0.85646 0.81918 25.839 10 Median 1.199 1.1914 NaN 1 1 Median 0.71795 0.62329 21.208 2 0 Median 1.0033 1.1064 16.988 3 0 Median 0.85802 0.74903 4.1857 2 0 Median 0.85483 0.89645 NaN 1 0 Median 0.85809 0.73887 NaN 1 0 Median 57826000 30186000 27640000 2282900 861900 1421000 2262500 1457600 804910 45728000 23975000 21753000 2280500 1165000 1115500 4739200 2451100 2288100 533740 275870 257870 31181 509;2438 32792 163165;163166;163167;163168;163169;163170;163171;163172;163173;163174 164108;164109;164110;164111;164112;164113;164114;164115;164116;164117;164118;164119 164114 12 SPAGLQVLNDYLADK ______________________________ SPAGLQVLNDYLADKSYIEGYVPSQADVAV K S P D K S 2 0 1 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1602.8253 P24534;C9JZW3;F8WF65;F2Z2G2 P24534 8 22 EEF1B2 Elongation factor 1-beta yes no 2 3.0426E-19 185.59 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 3 2 1.1035 0.9345 13.768 11 Median 1.018 0.93394 0.084969 2 0 Median 0.79905 0.70484 NaN 1 0 Median 1.1687 1.1184 1.868 3 0 Median 1.1422 0.95143 3.5095 3 0 Plateau NaN NaN NaN 0 0 Median 1.0542 0.87556 5.3302 2 0 Median 293240000 134520000 158730000 59528000 27804000 31725000 352390 231970 120420 164100000 74372000 89725000 50406000 23222000 27184000 0 0 0 18860000 8886500 9973300 31182 2123 32793 163175;163176;163177;163178;163179;163180;163181;163182;163183;163184;163185 164120;164121;164122;164123;164124;164125;164126;164127;164128;164129;164130;164131;164132;164133;164134;164135;164136;164137;164138;164139 164124 20 SPAGPAATPAQAQAASTPR AQVIKPPLIFVDPNRSPAGPAATPAQAQAA PAATPAQAQAASTPRKARASESTARSSSSE R S P P R K 7 1 0 0 0 2 0 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1748.8806 E7ETY2;A0A3B3IS06;Q13428 Q13428 967 985 TCOF1 Treacle protein no no 2;3 6.5009E-21 165.64 By MS/MS By MS/MS 2 3 0.55349 0.48785 28.313 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39962 0.44041 12.709 2 0 Median 0.66648 0.58472 28.256 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14772000 9623000 5148900 0 0 0 0 0 0 11084000 7512600 3570900 3688400 2110400 1578000 0 0 0 0 0 0 31183 2816;891 32794 163186;163187;163188;163189;163190 164140;164141;164142;164143;164144;164145 164142 6 SPAGSIVHELNPNFQPPK RLEDLVCDVVDRILKSPAGSIVHELNPNFQ GSIVHELNPNFQPPKRPFKRMNYSDAIVWL K S P P K R 1 0 2 0 0 1 1 1 1 1 1 1 0 1 4 2 0 0 0 1 0 0 18 0 1930.9901 O43776 O43776 368 385 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2;3 7.6915E-05 52.693 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 0.63691 0.60808 10.143 7 Median 0.6335 0.60107 6.7177 2 0 Median 0.83854 0.70357 NaN 1 0 Median 0.62923 0.62561 5.9111 2 1 Median 0.65387 0.55719 12.362 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94527000 56758000 37768000 31461000 18295000 13166000 8732900 4344900 4387900 42854000 27535000 15319000 11478000 6582800 4895700 0 0 0 0 0 0 31184 1589 32795 163191;163192;163193;163194;163195;163196;163197 164146;164147;164148;164149;164150;164151;164152;164153;164154;164155;164156;164157;164158;164159;164160 164160 15 SPAGSQQQFGYSPGQQQTHPQGSPR FGSPSPGGYPGSYSRSPAGSQQQFGYSPGQ YSPGQQQTHPQGSPRTSTPFGSGRVREKRM R S P P R T 1 1 0 0 0 7 0 4 1 0 0 0 0 1 4 4 1 0 1 0 0 0 25 0 2654.2222 Q8TAP9 Q8TAP9 93 117 MPLKIP M-phase-specific PLK1-interacting protein yes yes 3 3.2916E-08 40.142 By MS/MS By MS/MS 1 1 0.55888 0.5004 12.767 2 Median 0.4847 0.45721 NaN 1 0 Median 0.64441 0.54768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5250500 3049500 2201000 3697800 2151200 1546600 1552700 898340 654400 0 0 0 0 0 0 0 0 0 0 0 0 31185 3454 32796 163198;163199 164161;164162;164163 164161 3 SPAHLSLIR VFTQAIQWYQNHQPKSPAHLSLIREAANFK QNHQPKSPAHLSLIREAANFKLKYGRKKEA K S P I R E 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 9 0 992.57671 O76094 O76094 443 451 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.0042409 77.732 By MS/MS 1 0.76126 0.656 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76126 0.656 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2962000 2273800 688140 0 0 0 0 0 0 0 0 0 2962000 2273800 688140 0 0 0 0 0 0 31186 1721 32797 163200 164164 164164 1 SPAHYAGYWK GVFSAGLDLTEMCGRSPAHYAGYWKAVQEL EMCGRSPAHYAGYWKAVQELWLRLYQSNLV R S P W K A 2 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 2 0 0 0 10 0 1178.5509 P42126;Q96DC0;H3BS70 P42126 117 126 ECI1;DCI Enoyl-CoA delta isomerase 1, mitochondrial yes no 2 0.00040536 99.305 By MS/MS By MS/MS By MS/MS 2 1 2 0.8791 0.8291 21.023 5 Median 0.77468 0.73758 23.992 2 0 Median 1.0002 0.83859 NaN 1 0 Median 0.66708 0.67327 29.443 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43341000 23822000 19519000 23872000 13042000 10831000 7698900 3651200 4047800 11769000 7128800 4640500 0 0 0 0 0 0 0 0 0 31187 2305 32798 163201;163202;163203;163204;163205 164165;164166;164167;164168;164169 164167 5 SPAIAAVGPIK AETIREVCTKYIYNRSPAIAAVGPIKQLPD IYNRSPAIAAVGPIKQLPDFKQIRSNMCWL R S P I K Q 3 0 0 0 0 0 0 1 0 2 0 1 0 0 2 1 0 0 0 1 0 0 11 0 1022.6124 O75439 O75439 462 472 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 2 0.0014 80.438 By MS/MS By MS/MS 2 3 0.78059 0.69478 26.102 5 Median 0.766 0.69159 0.65103 2 0 Median 1.0791 0.91416 36.663 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36778000 18691000 18088000 19115000 10399000 8716000 17663000 8291400 9371500 0 0 0 0 0 0 0 0 0 0 0 0 31188 1673 32799 163206;163207;163208;163209;163210 164170;164171 164170 2 SPAISWVNNLEVDSR LNIQPSEADYAVDIRSPAISWVNNLEVDSR SPAISWVNNLEVDSRYNSWPSSLQELLRPT R S P S R Y 1 1 2 1 0 0 1 0 0 1 1 0 0 0 1 3 0 1 0 2 0 0 15 0 1685.8373 Q9NYU2 Q9NYU2 455 469 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 1.1775E-13 172.13 By MS/MS 1 0.84888 0.79682 NaN 1 Median 0.84888 0.79682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10530000 5296400 5233500 10530000 5296400 5233500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31189 4179 32800 163211 164172;164173 164173 2 SPAITATLEGK EVLDYLTNSASLQMKSPAITATLEGKNRTL LQMKSPAITATLEGKNRTLYLQSVTSIEER K S P G K N 2 0 0 0 0 0 1 1 0 1 1 1 0 0 1 1 2 0 0 0 0 0 11 0 1086.5921 Q8TBC4;F8W8D4 Q8TBC4 399 409 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 2 9.3028E-05 91.584 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31190 3460 32801 163212 164174 164174 1 SPALAFSLAATAQAAPR ELAILNGTYRDANIKSPALAFSLAATAQAA ALAFSLAATAQAAPRIITGPAPVLPPAALR K S P P R I 7 1 0 0 0 1 0 0 0 0 2 0 0 1 2 2 1 0 0 0 0 0 17 0 1641.8839 Q96PU8;H0YG47;H0YGD6 Q96PU8 211 227 QKI Protein quaking yes no 2;3 2.0462E-10 102.66 By MS/MS By matching 2 1 0.55194 0.59866 1.729 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54888 0.5951 0.84363 2 0 Median 0.71847 0.61206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8955500 5453200 3502300 0 0 0 0 0 0 8557900 5219100 3338700 397640 234050 163590 0 0 0 0 0 0 31191 3715 32802 163213;163214;163215 164175;164176;164177 164175 3 SPAPGAPTR KAKVPAQANGTPTTKSPAPGAPTRSPSTPA GTPTTKSPAPGAPTRSPSTPAKSPKLQKKN K S P T R S 2 1 0 0 0 0 0 1 0 0 0 0 0 0 3 1 1 0 0 0 0 0 9 0 852.44537 Q9BQG0;I3L1L3 Q9BQG0 1232 1240 MYBBP1A Myb-binding protein 1A yes no 2 0.020986 38.776 By MS/MS By MS/MS 1 1 0.62512 0.65122 15.509 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68197 0.7267 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.573 0.58358 NaN 1 0 Median NaN NaN NaN 0 0 Median 870750 492690 378060 0 0 0 0 0 0 369160 200770 168390 0 0 0 501590 291920 209670 0 0 0 31192 3789 32803 163216;163217 164178;164179 164179 2 SPAPPLLHVAALGQK NAVKVQTLSNQPLLKSPAPPLLHVAALGQK SPAPPLLHVAALGQKQGILGAQPQLIFQPH K S P Q K Q 3 0 0 0 0 1 0 1 1 0 3 1 0 0 3 1 0 0 0 1 0 0 15 0 1497.8667 Q8N163;E5RFJ3;H0YC69;E5RGU7;H0YC58 Q8N163 124 138 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2;3 1.0943E-06 88.552 By MS/MS By MS/MS By matching By matching 2 3 1 1 0.60974 0.61766 9.7473 7 Median 0.63242 0.61119 4.9555 2 0 Median NaN NaN NaN 0 0 Median 0.55284 0.59055 10.157 3 1 Median 0.73192 0.61766 NaN 1 0 Median 0.71032 0.72859 NaN 1 0 Median NaN NaN NaN 0 0 Median 60188000 37604000 22584000 28533000 17318000 11215000 0 0 0 29989000 19292000 10697000 596580 357020 239560 1069500 637250 432270 0 0 0 31193 3354 32804 163218;163219;163220;163221;163222;163223;163224 164180;164181;164182;164183;164184;164185;164186;164187 164184 8 SPAQILLR LEEPVVLALAEKYGRSPAQILLRWQVQRKV LAEKYGRSPAQILLRWQVQRKVICIPKSIT R S P L R W 1 1 0 0 0 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 8 0 896.54435 P14550 P14550 244 251 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 2 0.00082632 97.602 By MS/MS 1 1.0253 1.0208 NaN 1 Median 1.0253 1.0208 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9894900 4327300 5567700 9894900 4327300 5567700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31194 2004 32805 163225 164188 164188 1 SPASDTYIVFGEAK SKNILFVITKPDVYKSPASDTYIVFGEAKI KSPASDTYIVFGEAKIEDLSQQAQLAAAEK K S P A K I 2 0 0 1 0 0 1 1 0 1 0 1 0 1 1 2 1 0 1 1 0 0 14 0 1483.7195 F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3;F8W1N5;F8VNW4 F8VZJ2 35 48 NACA Nascent polypeptide-associated complex subunit alpha;Nascent polypeptide-associated complex subunit alpha, muscle-specific form yes no 2 1.8376E-15 143.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 3 2 1 0.96231 0.91559 11.227 12 Median 1.0309 0.92978 2.1355 3 0 Plateau 1.0295 0.86387 9.1182 2 0 Median 0.94974 0.91634 NaN 1 0 Median 0.98346 0.82122 7.2447 3 0 Plateau 0.93911 1.0131 9.2796 2 1 Median 1.0319 0.85182 NaN 1 0 Median 478810000 237820000 241000000 284380000 138990000 145380000 108740000 55236000 53499000 51272000 25862000 25410000 25735000 12929000 12806000 6696600 3755600 2941000 1995600 1040500 955120 31195 907 32806 163226;163227;163228;163229;163230;163231;163232;163233;163234;163235;163236;163237;163238;163239 164189;164190;164191;164192;164193;164194;164195;164196;164197;164198;164199;164200;164201;164202 164189 14 SPASIEVVKPMEAASAILSQADAR FIVSPLNSSSALALRSPASIEVVKPMEAAS PMEAASAILSQADARQVVLKYTVPGYRNSL R S P A R Q 6 1 0 1 0 1 2 0 0 2 1 1 1 0 2 4 0 0 0 2 0 0 24 1 2440.2632 Q9BVP2 Q9BVP2 324 347 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 3 0.0015617 26.005 By matching By MS/MS By MS/MS By matching 1 1 3 1 0.72431 0.71609 44.792 6 Median 0.95797 0.96223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7104 0.75631 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59308 0.63427 58.146 3 0 Median 0.74869 0.678 NaN 1 0 Median 15271000 9251000 6019900 5450400 2941300 2509200 0 0 0 971860 550270 421590 0 0 0 5664400 4109900 1554600 3184200 1649700 1534500 31196 3858 32807 163240;163241;163242;163243;163244;163245 164203;164204 164204 2 SPASTFALSSQVPDVMVVGEPTLMGGEFGDEDER SSGGGNTNNSNSKKKSPASTFALSSQVPDV EPTLMGGEFGDEDERLITRLENTQFDAANG K S P E R L 2 1 0 3 0 1 4 4 0 0 2 0 2 2 3 4 2 0 0 4 0 0 34 0 3553.6229 Q86U70 Q86U70 323 356 LDB1 LIM domain-binding protein 1 yes yes 3 0.046531 8.6902 By MS/MS 1 0.6641 0.65133 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6641 0.65133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 831430 500040 331390 0 0 0 0 0 0 831430 500040 331390 0 0 0 0 0 0 0 0 0 31197 3272 32808 163246 164205 164205 1 SPAVATSTAAPPPPSSPLPSK FTPSSTMMEVFLQEKSPAVATSTAAPPPPS STAAPPPPSSPLPSKSTSAPQMSPGSSDNQ K S P S K S 4 0 0 0 0 0 0 0 0 0 1 1 0 0 7 5 2 0 0 1 0 0 21 0 1959.0313 F8W726;Q14157 F8W726 450 470 UBAP2L Ubiquitin-associated protein 2-like yes no 2 6.0355E-09 60.401 By MS/MS By MS/MS 1 1 0.42297 0.41891 NaN 1 Median 0.42297 0.41891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3533100 2791200 741980 2823000 2081000 741980 0 0 0 0 0 0 710190 710190 0 0 0 0 0 0 0 31198 1083 32809 163247;163248 164206;164207 164206 2 SPDDAVFQQIALSYSK YPFDDDEQGLATYSKSPDDAVFQQIALSYS PDDAVFQQIALSYSKENSQMFQGRPCKNMY K S P S K E 2 0 0 2 0 2 0 0 0 1 1 1 0 1 1 3 0 0 1 1 0 0 16 0 1767.8679 O75976 O75976 694 709 CPD Carboxypeptidase D yes yes 2 1.151E-06 91.961 By MS/MS 1 0.86621 0.83588 NaN 1 Median 0.86621 0.83588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7522200 3895400 3626800 7522200 3895400 3626800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31199 1714 32810 163249 164208;164209 164209 2 SPDEAYAIAK LQEAGVSVPKGYVAKSPDEAYAIAKKLGSK GYVAKSPDEAYAIAKKLGSKDVVIKAQVLA K S P A K K 3 0 0 1 0 0 1 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 10 0 1063.5186 A0A2R8YDQ9;A0A2R8Y6Y7;Q9P2R7;A0A0U1RQF8;A0A2R8Y5P6;A0A2R8Y6E6;A0A0U1RQU7;A0A2R8Y5P4 A0A2R8YDQ9 21 30 SUCLA2 Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial yes no 2 0.029888 34.173 By MS/MS 1 0.81047 0.76168 NaN 1 Median 0.81047 0.76168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2814800 1580400 1234400 2814800 1580400 1234400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31200 379 32811 163250 164210 164210 1 SPDEEDYDYESYEK GDFSYAYQKPEETTRSPDEEDYDYESYEKT RSPDEEDYDYESYEKTTRTSDVGGYYYEKI R S P E K T 0 0 0 3 0 0 4 0 0 0 0 1 0 0 1 2 0 0 3 0 0 0 14 0 1767.6635 P46821 P46821 1881 1894 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00013568 80.979 By MS/MS 1 1.2234 1.1704 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2234 1.1704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1582000 678960 903010 0 0 0 0 0 0 0 0 0 1582000 678960 903010 0 0 0 0 0 0 31201 2347 32812 163251 164211 164211 1 SPDELPSAGGDGGK SLGPGRGTRDKKKGRSPDELPSAGGDGGKS RSPDELPSAGGDGGKSKKFTLKRLMADELE R S P G K S 1 0 0 2 0 0 1 4 0 0 1 1 0 0 2 2 0 0 0 0 0 0 14 0 1285.5786 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;B4E2I7 A0A0G2JH68 22 35 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.00040693 71.159 By MS/MS 1 1.0755 0.92552 NaN 1 Median NaN NaN NaN 0 0 Median 1.0755 0.92552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3971400 1929800 2041600 0 0 0 3971400 1929800 2041600 0 0 0 0 0 0 0 0 0 0 0 0 31202 274 32813 163252 164212;164213 164212 2 SPDEVTLTSIVPTR LDTQRTISRKEKGGRSPDEVTLTSIVPTRD RSPDEVTLTSIVPTRDGTAPPPQSPGSPGT R S P T R D 0 1 0 1 0 0 1 0 0 1 1 0 0 0 2 2 3 0 0 2 0 0 14 0 1513.7988 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 319 332 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes no 2 3.3461E-07 125.97 By MS/MS By matching By MS/MS 1 1 1 0.77269 0.71168 22.109 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61586 0.60868 NaN 1 0 Median 0.96945 0.83211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12506000 7384700 5121300 0 0 0 0 0 0 9908700 6139500 3769200 2597300 1245200 1352100 0 0 0 0 0 0 31203 244 32814 163253;163254;163255 164214;164215;164216 164214 3 SPDFTNENPLETR VDNSSLTGESEPQTRSPDFTNENPLETRNI TRSPDFTNENPLETRNIAFFSTNCVEGTAR R S P T R N 0 1 2 1 0 0 2 0 0 0 1 0 0 1 2 1 2 0 0 0 0 0 13 0 1518.6951 P05023 P05023 228 240 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 2.3544E-41 222.3 By MS/MS By MS/MS By MS/MS 3 3 2 0.84501 0.77468 13.113 8 Median 0.84817 0.80229 3.945 3 0 Median 0.86094 0.68864 13.164 3 1 Median 0.76565 0.83247 15.085 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119400000 64031000 55365000 71459000 37968000 33491000 42036000 22851000 19185000 5900800 3211200 2689600 0 0 0 0 0 0 0 0 0 31204 1857 32815 163256;163257;163258;163259;163260;163261;163262;163263 164217;164218;164219;164220;164221;164222;164223;164224;164225;164226;164227;164228;164229;164230;164231;164232;164233;164234 164220 18 SPDGAHLTWEPPSVTSGK LPGFPGAPCAIKISKSPDGAHLTWEPPSVT GAHLTWEPPSVTSGKIIEYSVYLAIQSSQA K S P G K I 1 0 0 1 0 0 1 2 1 0 1 1 0 0 3 3 2 1 0 1 0 0 18 0 1864.8955 A6NEM2;P51610;H7C1C4 A6NEM2 1947 1964 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2;3 2.3164E-05 55.452 By matching By MS/MS By MS/MS 1 6 3 0.79458 0.68918 28.411 10 Median 0.78215 0.77354 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59849 0.62994 32.807 6 2 Median 0.80966 0.69097 27.985 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72786000 43914000 28872000 3125700 1599400 1526400 0 0 0 66425000 40552000 25873000 3234900 1762400 1472500 0 0 0 0 0 0 31205 509;2438 32816 163264;163265;163266;163267;163268;163269;163270;163271;163272;163273 164235;164236;164237;164238;164239;164240;164241;164242 164237 8 SPDTFVR AKLEVAPISDIIAIKSPDTFVRTIYAGNAL ISDIIAIKSPDTFVRTIYAGNALCTVKCDE K S P V R T 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 7 0 820.40792 P13804;H0YL12;H0YK49;H0YLU7;H0YNX6;H0YKF0 P13804 140 146 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.0026796 124.89 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0942 0.97811 13.384 4 Median 0.85458 0.80014 NaN 1 0 Median 1.279 1.0648 NaN 1 0 Median 0.95257 0.91277 NaN 1 0 Median 1.2569 1.0481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24103000 11374000 12729000 14625000 7398000 7227200 5982500 2407700 3574800 1298200 657060 641160 2196800 910940 1285900 0 0 0 0 0 0 31206 1996 32817 163274;163275;163276;163277 164243;164244;164245 164245 3 SPDTILQK LRRYIKEYVTCHTCRSPDTILQKDTRLYFL VTCHTCRSPDTILQKDTRLYFLQCETCHSR R S P Q K D 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 8 0 900.49165 P20042 P20042 286 293 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0028313 133.79 By matching By matching By MS/MS By MS/MS By matching 1 2 1 1 1 0.94296 0.86897 10.026 6 Median 1.0957 1.0468 NaN 1 0 Median 0.95244 0.81455 6.5482 2 0 Median 0.94594 0.92511 NaN 1 0 Median 0.93999 0.84573 NaN 1 0 Median 0.84205 0.88509 NaN 1 0 Median NaN NaN NaN 0 0 Median 32578000 16289000 16288000 3231900 1781500 1450500 4427400 2081400 2346000 6773300 3273900 3499400 14450000 7272800 7177200 3694900 1880000 1815000 0 0 0 31207 2072 32818 163278;163279;163280;163281;163282;163283 164246;164247;164248;164249 164248 4 SPDTNYLFMGDYVDR GQFHDLMELFRIGGKSPDTNYLFMGDYVDR SPDTNYLFMGDYVDRGYYSVETVTLLVALK K S P D R G 0 1 1 3 0 0 0 1 0 0 1 0 1 1 1 1 1 0 2 1 0 0 15 0 1791.7774 P67775;P62714;E7ESG8;E5RHC1;E5RFI3;E5RHP4 P67775 75 89 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase yes no 2 5.211E-06 90.685 By MS/MS By matching By MS/MS By MS/MS 3 5 2 2 0.91585 0.84532 13.277 11 Median 0.9901 0.94329 19.035 2 0 Median 0.85516 0.73294 11.968 5 0 Median 0.85235 0.81959 5.9356 2 0 Median 1.0289 0.86126 2.6417 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14328000 7304500 7023500 2868900 1355900 1513000 3494100 1724200 1769800 5632400 3076900 2555600 2332600 1147500 1185100 0 0 0 0 0 0 31208 2594 32819;32820 163284;163285;163286;163287;163288;163289;163290;163291;163292;163293;163294;163295 164250;164251;164252;164253;164254;164255 164255 1257 6 SPEDKVQIAANEETQER GDGVDTKVAQGATEKSPEDKVQIAANEETQ EDKVQIAANEETQEREEQMKEGEETEGSEE K S P E R E 2 1 1 1 0 2 4 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 17 1 1942.9232 P49321 P49321 451 467 NASP Nuclear autoantigenic sperm protein yes yes 3 0.019224 19.819 By MS/MS By matching 1 1 0.95967 0.94809 23.223 2 Median 0.77352 0.80452 NaN 1 0 Median 1.1906 1.1173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8128200 3952500 4175700 3429900 1895800 1534100 4698300 2056700 2641600 0 0 0 0 0 0 0 0 0 0 0 0 31209 2376 32821 163296;163297 164256 164256 1 SPEDLER KSTEEARKELQAAGKSPEDLERLLPHKVFE KELQAAGKSPEDLERLLPHKVFEGNRPTNS K S P E R L 0 1 0 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 7 0 844.39266 P06744;A0A2U3TZU2;Q8N196 P06744 455 461 GPI;SIX5 Glucose-6-phosphate isomerase;Homeobox protein SIX5 yes no 2 0.0038136 102.71 By MS/MS By MS/MS By matching 2 3 1 0.96979 0.85172 19.559 6 Median 1.0244 0.99888 27.568 2 1 Median 1.0479 0.88256 15.24 3 0 Median 0.70148 0.7244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20170000 10297000 9873300 6417100 3368900 3048200 13149000 6584800 6564500 603690 343090 260590 0 0 0 0 0 0 0 0 0 31210 1875 32822 163298;163299;163300;163301;163302;163303 164257;164258;164259;164260 164258 4 SPEDPQVLDNFLQVLIK WYMQSFLELLEYENKSPEDPQVLDNFLQVL EDPQVLDNFLQVLIKVRNRHNDVVPTMAQG K S P I K V 0 0 1 2 0 2 1 0 0 1 3 1 0 1 2 1 0 0 0 2 0 0 17 0 1954.0411 Q15120 Q15120 98 114 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.045803 21.759 By matching By MS/MS 2 1 0.62213 0.6032 24.647 3 Median NaN NaN NaN 0 0 Median 0.55529 0.49043 29.268 2 0 Median 0.62213 0.61838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2861400 1708400 1152900 0 0 0 128180 66130 62049 2733200 1642300 1090900 0 0 0 0 0 0 0 0 0 31211 2929 32823 163304;163305;163306 164261 164261 1 SPEEGAETPVYLALLPPDAEGPHGQFVSEK PGWVRTDMAGPKATKSPEEGAETPVYLALL PPDAEGPHGQFVSEKRVEQW__________ K S P E K R 3 0 0 1 0 1 5 3 1 0 3 1 0 1 5 2 1 0 1 2 0 0 30 0 3163.535 P16152 P16152 243 272 CBR1 Carbonyl reductase [NADPH] 1 yes yes 3 3.6719E-14 52.685 By MS/MS By matching By MS/MS 1 1 1 0.46215 0.44197 36.177 3 Median 0.42926 0.40843 NaN 1 0 Median 0.94161 0.79207 NaN 1 0 Median 0.46215 0.44197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8114000 5704400 2409600 5381600 3585000 1796600 76465 41104 35361 2656000 2078300 577630 0 0 0 0 0 0 0 0 0 31212 2025 32824 163307;163308;163309 164262;164263;164264 164263 3 SPEPEVLSTQEDLFDQSNK LSAQELMESGLQIQKSPEPEVLSTQEDLFD EVLSTQEDLFDQSNKTVSSDGCSTPSREEG K S P N K T 0 0 1 2 0 2 3 0 0 0 2 1 0 1 2 3 1 0 0 1 0 0 19 0 2162.0015 A6NNK5;Q12888;C9JXV0 A6NNK5 299 317 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 1.0324E-09 71.548 By MS/MS 1 0.82841 0.92283 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82841 0.92283 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4685000 2766900 1918000 0 0 0 0 0 0 4685000 2766900 1918000 0 0 0 0 0 0 0 0 0 31213 530 32825 163310 164265 164265 1 SPEQQLSATQK GGVITSDMIEMIFSKSPEQQLSATQKFRKL IFSKSPEQQLSATQKFRKLLSKEPNPPIDE K S P Q K F 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 11 0 1215.6095 P52294;C9JYI4;C9J352;C9JWD9;F2Z3G4;C9J4U1 P52294 95 105 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes no 2 0.00041805 70.1 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.96569 0.90885 13.175 5 Median 0.93953 0.90885 NaN 1 0 Median 1.1841 1.0361 16.465 2 0 Median 0.86964 0.8764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96569 0.82297 NaN 1 0 Median 7254500 3586100 3668400 1722200 871920 850320 4125100 2024100 2101000 905110 470650 434460 0 0 0 0 0 0 502080 219400 282670 31214 2449 32826 163311;163312;163313;163314;163315 164266;164267;164268 164268 3 SPEVLLGSAR PIRVYTHEVVTLWYRSPEVLLGSARYSTPV TLWYRSPEVLLGSARYSTPVDIWSIGTIFA R S P A R Y 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1027.5662 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 171 180 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 1.3923E-10 176.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 2 0.99444 0.83361 19.15 9 Median 0.98717 0.92081 NaN 1 0 Median 0.91102 0.77616 0.82551 2 0 Median 1.0052 1.0308 7.2327 2 0 Median 0.8994 0.75061 NaN 1 0 Median 1.3427 1.3364 NaN 1 0 Median 1.0065 0.82025 2.2853 2 0 Median 228520000 114520000 114010000 101180000 51016000 50162000 38290000 19365000 18925000 43781000 21353000 22429000 34794000 17866000 16928000 4851900 2060300 2791600 5625800 2855600 2770200 31215 1871 32827 163316;163317;163318;163319;163320;163321;163322;163323;163324 164269;164270;164271;164272;164273;164274;164275;164276;164277;164278;164279;164280;164281;164282 164272 14 SPEVLSGGEDGAVR RGHTDYIHCLALRERSPEVLSGGEDGAVRL RSPEVLSGGEDGAVRLWDLRTAKEVQTIEV R S P V R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 1 2 0 0 0 2 0 0 14 0 1371.663 Q86W42 Q86W42 180 193 THOC6 THO complex subunit 6 homolog yes yes 2 5.6947E-33 215.56 By MS/MS By MS/MS 1 3 0.84103 0.73555 9.3718 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73946 0.71816 NaN 1 0 Median 0.90316 0.75337 11.328 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50732000 28701000 22031000 0 0 0 0 0 0 30138000 16537000 13601000 20594000 12164000 8430100 0 0 0 0 0 0 31216 3290 32828 163325;163326;163327;163328 164283;164284;164285;164286;164287 164283 5 SPEYLSLFIDDK TIAGDFEYFLNLNSRSPEYLSLFIDDKLKK NSRSPEYLSLFIDDKLKKGVKGLTEQEVET R S P D K L 0 0 0 2 0 0 1 0 0 1 2 1 0 1 1 2 0 0 1 0 0 0 12 0 1425.7028 Q13618 Q13618 384 395 CUL3 Cullin-3 yes yes 2 0.046298 44.309 By MS/MS 1 1.5958 1.604 NaN 1 Median 1.5958 1.604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1339000 499910 839070 1339000 499910 839070 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31217 2831 32829 163329 164288 164288 1 SPFEVNVGMALGDANK LHKVTVLFAGQNIERSPFEVNVGMALGDAN PFEVNVGMALGDANKVSARGPGLEPVGNVA R S P N K V 2 0 2 1 0 0 1 2 0 0 1 1 1 1 1 1 0 0 0 2 0 0 16 0 1647.7927 Q14315 Q14315 362 377 FLNC Filamin-C yes yes 2 0.00013117 51.286 By MS/MS 1 0.9296 0.81465 NaN 1 Median NaN NaN NaN 0 0 Median 0.9296 0.81465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6863100 3260200 3602900 0 0 0 6863100 3260200 3602900 0 0 0 0 0 0 0 0 0 0 0 0 31218 2871 32830 163330 164289;164290 164290 2 SPFEVQVGPEAGMQK RYSIAITWGGHHIPKSPFEVQVGPEAGMQK SPFEVQVGPEAGMQKVRAWGPGLHGGIVGR K S P Q K V 1 0 0 0 0 2 2 2 0 0 0 1 1 1 2 1 0 0 0 2 0 0 15 0 1602.7712 O75369;E7EN95 O75369 537 551 FLNB Filamin-B yes no 2 2.9964E-90 220.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 0.83116 0.74553 31.317 10 Median 0.88199 0.86087 5.8013 4 2 Median 1.1315 1.0049 43.062 4 0 Linear 0.47882 0.52812 NaN 1 1 Median 0.77215 0.72597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 186730000 98477000 88257000 136260000 70364000 65898000 35849000 18898000 16952000 13710000 8705400 5005100 912820 510820 402000 0 0 0 0 0 0 31219 1664 32831;32832 163331;163332;163333;163334;163335;163336;163337;163338;163339;163340 164291;164292;164293;164294;164295;164296;164297;164298;164299;164300;164301;164302;164303;164304;164305 164298 531 15 SPFEVQVSPEAGVQK KYVVTITWGGYAIPRSPFEVQVSPEAGVQK SPFEVQVSPEAGVQKVRAWGPGLETGQVGK R S P Q K V 1 0 0 0 0 2 2 1 0 0 0 1 0 1 2 2 0 0 0 3 0 0 15 0 1600.8097 Q14315 Q14315 559 573 FLNC Filamin-C yes yes 2 2.7756E-19 186.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 3 1 0.79471 0.73574 45.084 11 Median 1.039 1.036 29.193 3 0 Plateau 0.8121 0.72281 2.5056 2 0 Median 0.41301 0.4491 109.06 2 1 Median 0.76617 0.73999 17.758 3 0 Median 0.42834 0.44818 NaN 1 1 Median NaN NaN NaN 0 0 Median 201200000 118450000 82756000 103410000 52000000 51407000 45072000 25567000 19505000 41347000 32855000 8491500 3985300 2258600 1726700 7389700 5764200 1625600 0 0 0 31220 2871 32833 163341;163342;163343;163344;163345;163346;163347;163348;163349;163350;163351 164306;164307;164308;164309;164310;164311;164312;164313;164314;164315;164316;164317;164318;164319;164320;164321 164307 16 SPFEVSVDK LHKVTVLFAGQHISKSPFEVSVDKAQGDAS GQHISKSPFEVSVDKAQGDASKVTAKGPGL K S P D K A 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 2 0 0 0 2 0 0 9 0 1006.4971 O75369;E7EN95 O75369 341 349 FLNB Filamin-B yes no 2 9.7957E-09 131.41 By MS/MS By MS/MS By matching By matching 2 3 1 3 0.95797 0.88601 27.664 8 Median 0.9297 0.91178 4.6914 2 0 Median 0.98486 0.87584 2.2706 2 1 Median 0.76704 0.8549 NaN 1 0 Median 1.0798 1.0388 48.552 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62420000 31823000 30596000 14129000 7861700 6267700 41556000 20374000 21182000 3795200 2105200 1690000 2939000 1482500 1456500 0 0 0 0 0 0 31221 1664 32834 163352;163353;163354;163355;163356;163357;163358;163359;163360 164322;164323;164324;164325;164326 164324 5 SPFEVSVDKAQGDASK LHKVTVLFAGQHISKSPFEVSVDKAQGDAS PFEVSVDKAQGDASKVTAKGPGLEAVGNIA K S P S K V 2 0 0 2 0 1 1 1 0 0 0 2 0 1 1 3 0 0 0 2 0 0 16 1 1663.8053 O75369;E7EN95 O75369 341 356 FLNB Filamin-B yes no 3 4.032E-07 91.355 By MS/MS 2 0.98291 1.0086 6.6689 2 Median 0.98291 1.0086 6.6689 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24280000 13038000 11242000 24280000 13038000 11242000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31222 1664 32835 163361;163362 164327;164328;164329;164330 164329 4 SPFEVYVDK THKVTVLFAGQHIAKSPFEVYVDKSQGDAS GQHIAKSPFEVYVDKSQGDASKVTAQGPGL K S P D K S 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 2 0 0 9 0 1082.5284 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 368 376 FLNA Filamin-A no no 2 0.00062177 108.98 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 2 0.98507 0.86212 17.403 11 Median 1.1139 1.1182 18.709 3 0 Median 0.98507 0.86212 5.7712 5 0 Median 0.77507 0.85612 NaN 1 0 Median 0.87738 0.82352 6.062 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 175210000 87944000 87271000 68386000 32863000 35523000 92688000 46259000 46429000 10363000 6813700 3548900 3778200 2008500 1769700 0 0 0 0 0 0 31223 2088;3120 32836 163363;163364;163365;163366;163367;163368;163369;163370;163371;163372;163373 164331;164332;164333;164334;164335;164336;164337;164338;164339;164340;164341;164342;164343;164344 164338 14 SPFEVYVDKSQGDASK THKVTVLFAGQHIAKSPFEVYVDKSQGDAS PFEVYVDKSQGDASKVTAQGPGLEPSGNIA K S P S K V 1 0 0 2 0 1 1 1 0 0 0 2 0 1 1 3 0 0 1 2 0 0 16 1 1755.8315 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 368 383 FLNA Filamin-A no no 2;3 2.6535E-35 209.64 By MS/MS By matching By MS/MS 4 1 1 0.93206 0.98355 9.2073 6 Median 0.93206 0.9105 7.8835 4 0 Median 1.1312 1.0797 NaN 1 0 Median 0.88278 1.022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140420000 72742000 67677000 118280000 62027000 56252000 10314000 4747800 5565800 11827000 5967000 5859800 0 0 0 0 0 0 0 0 0 31224 2088;3120 32837 163374;163375;163376;163377;163378;163379 164345;164346;164347;164348;164349;164350;164351;164352;164353 164350 9 SPFLQVFNNSPDESSYYR DSFSLYPQFMFHLRRSPFLQVFNNSPDESS LQVFNNSPDESSYYRHHFARQDLTQSLIMI R S P Y R H 0 1 2 1 0 1 1 0 0 0 1 0 0 2 2 4 0 0 2 1 0 0 18 0 2148.9752 A0A2R8YFH5;Q15437;Q5QPE1 A0A2R8YFH5 571 588 SEC23B Protein transport protein Sec23B yes no 2 9.6589E-06 63.727 By MS/MS By MS/MS 1 1 0.84594 0.8566 4.5792 2 Median 0.91081 0.88479 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.78569 0.82931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4889200 2500000 2389100 3316500 1561100 1755500 0 0 0 1572600 938990 633650 0 0 0 0 0 0 0 0 0 31225 401 32838 163380;163381 164354;164355;164356 164354 3 SPFPVHVSEACNPNACR PHTVHVAFAGAPITRSPFPVHVSEACNPNA FPVHVSEACNPNACRASGRGLQPKGVRVKE R S P C R A 2 1 2 0 2 0 1 0 1 0 0 0 0 1 3 2 0 0 0 2 0 0 17 0 1940.8621 Q14315 Q14315 462 478 FLNC Filamin-C yes yes 3 0.0034409 72.797 By MS/MS 1 0.7367 0.5953 NaN 1 Median NaN NaN NaN 0 0 Median 0.7367 0.5953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12285000 7236700 5048700 0 0 0 12285000 7236700 5048700 0 0 0 0 0 0 0 0 0 0 0 0 31226 2871 32839 163382 164357 164357 0 SPFSVAVSPSLDLSK PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK SPFSVAVSPSLDLSKIKVSGLGEKVDVGKD K S P S K I 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 5 0 0 0 2 0 0 15 0 1532.8086 P21333;Q60FE5;A0A087WWY3 P21333 959 973 FLNA Filamin-A no no 2 1.3353E-10 167.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 1 1 0.79455 0.82427 19.364 12 Median 0.90251 0.90763 18.265 3 0 Median 0.76161 0.67766 2.326 2 0 Median 0.79273 0.86193 0.35015 3 0 Plateau 0.784 0.73467 2.2738 2 0 Median 1.067 1.1168 NaN 1 0 Median 0.70139 0.60408 NaN 1 0 Median 433290000 230710000 202580000 305400000 161140000 144250000 66207000 36468000 29739000 47381000 25833000 21548000 4290300 2368800 1921500 9503000 4613300 4889600 512580 283880 228710 31227 2088;3120 32840 163383;163384;163385;163386;163387;163388;163389;163390;163391;163392;163393;163394 164358;164359;164360;164361;164362;164363;164364;164365;164366;164367;164368;164369;164370;164371;164372;164373;164374;164375;164376;164377;164378;164379;164380;164381;164382;164383 164378 26 SPFTVGVAAPLDLSK NMQVLVTYGGDPIPKSPFTVGVAAPLDLSK SPFTVGVAAPLDLSKIKLNGLENRVEVGKD K S P S K I 2 0 0 1 0 0 0 1 0 0 2 1 0 1 2 2 1 0 0 2 0 0 15 0 1500.8188 O75369;E7EN95 O75369 932 946 FLNB Filamin-B yes no 2 1.3407E-10 149.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 0.8718 0.8066 22.568 10 Median 0.8458 0.82995 5.6542 2 0 Median 0.88672 0.79126 31.757 3 0 Plateau 0.71221 0.78007 6.3476 2 0 Median 0.95289 0.8807 2.5305 2 0 Median 1.0559 1.1118 NaN 1 0 Median NaN NaN NaN 0 0 Median 125320000 65543000 59772000 75182000 39693000 35489000 33252000 16049000 17204000 12143000 7352900 4789900 1569100 765750 803330 3169500 1682900 1486700 0 0 0 31228 1664 32841 163395;163396;163397;163398;163399;163400;163401;163402;163403;163404 164384;164385;164386;164387;164388;164389;164390;164391;164392;164393;164394;164395;164396;164397 164387 14 SPFVVNVAPPLDLSK NMAVTVTYGGDPVPKSPFVVNVAPPLDLSK SPFVVNVAPPLDLSKIKVQGLNSKVAVGQE K S P S K I 1 0 1 1 0 0 0 0 0 0 2 1 0 1 3 2 0 0 0 3 0 0 15 0 1581.8766 Q14315 Q14315 954 968 FLNC Filamin-C yes yes 2 5.0671E-08 137.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 2 1 0.76514 0.72891 20.656 12 Median 0.78232 0.73892 7.3193 3 0 Plateau 0.67983 0.60488 3.4156 2 0 Median 0.82846 0.91351 0.98879 2 0 Median 0.69676 0.64804 11.485 2 0 Median 0.98325 1.0296 16.016 2 0 Median 0.78674 0.68081 NaN 1 0 Median 83473000 46698000 36774000 47801000 26395000 21406000 24682000 14506000 10176000 6583600 3587400 2996200 2041300 1166200 875100 2114800 884980 1229800 249990 158660 91330 31229 2871 32842 163405;163406;163407;163408;163409;163410;163411;163412;163413;163414;163415;163416 164398;164399;164400;164401;164402;164403;164404;164405;164406;164407;164408;164409;164410;164411;164412;164413;164414;164415 164409 18 SPFVVQVGEACNPNACR PHVVKIFFAGDTIPKSPFVVQVGEACNPNA FVVQVGEACNPNACRASGRGLQPKGVRIRE K S P C R A 2 1 2 0 2 1 1 1 0 0 0 0 0 1 2 1 0 0 0 3 0 0 17 0 1903.8669 O75369;E7EN95 O75369 440 456 FLNB Filamin-B yes no 2 4.7119E-07 89.403 By MS/MS 1 0.83147 0.70715 NaN 1 Median NaN NaN NaN 0 0 Median 0.83147 0.70715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3048300 1607000 1441300 0 0 0 3048300 1607000 1441300 0 0 0 0 0 0 0 0 0 0 0 0 31230 1664 32843 163417 164416;164417 164417 2 SPFWILSIPSEDIAR LFGGQFASSQETYGKSPFWILSIPSEDIAR SPFWILSIPSEDIARNLMKRTVCAKFHFYI K S P A R N 1 1 0 1 0 0 1 0 0 3 1 0 0 1 2 3 0 1 0 0 0 0 15 0 1729.9039 K7EPZ4;K7EJQ4;K7ENP1;Q7Z4G4 K7EPZ4 47 61 TRMT11 tRNA (guanine(10)-N2)-methyltransferase homolog yes no 2 0.0025188 54.471 By MS/MS By MS/MS 1 1 0.8073 0.74769 12.885 2 Median 0.83906 0.81901 NaN 1 0 Median 0.77674 0.68258 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1142800 604340 538480 554070 292270 261800 588750 312070 276690 0 0 0 0 0 0 0 0 0 0 0 0 31231 1365 32844 163418;163419 164418;164419 164419 2 SPFYLDSLEEK FGGPRPRRQPPPPPRSPFYLDSLEEKRKRQ PPPRSPFYLDSLEEKRKRQRSERLERIFQL R S P E K R 0 0 0 1 0 0 2 0 0 0 2 1 0 1 1 2 0 0 1 0 0 0 11 0 1326.6343 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 1882 1892 SRCAP Helicase SRCAP yes no 2 0.00012637 119.68 By MS/MS 1 0.78105 0.83461 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78105 0.83461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13519000 7858400 5660800 0 0 0 0 0 0 13519000 7858400 5660800 0 0 0 0 0 0 0 0 0 31232 3199 32845 163420 164420;164421 164421 2 SPGADLLQVLTK LDSLWAAGQELQAWKSPGADLLQVLTKAVK AWKSPGADLLQVLTKAVKSAEAAAEATKNM K S P T K A 1 0 0 1 0 1 0 1 0 0 3 1 0 0 1 1 1 0 0 1 0 0 12 0 1240.7027 Q3LXA3;H0YCY6;I3L252 Q3LXA3 511 522 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.001303 54.608 By MS/MS 1 0.88174 0.84317 NaN 1 Median 0.88174 0.84317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5303200 2723100 2580100 5303200 2723100 2580100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31233 3012 32846 163421 164422 164422 1 SPGAFDMSGVR SAGELELLAGEVPARSPGAFDMSGVRGSLA VPARSPGAFDMSGVRGSLAEAVGSPPPAAT R S P V R G 1 1 0 1 0 0 0 2 0 0 0 0 1 1 1 2 0 0 0 1 0 0 11 0 1122.5128 Q9Y6I3 Q9Y6I3 435 445 EPN1 Epsin-1 yes yes 2 0.0099432 63.076 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31234 4493 32847 163422 164423 164423 1 SPGAPGPLTLK QHPVPPPAQNQNQVRSPGAPGPLTLKEVEE NQVRSPGAPGPLTLKEVEELEQLTQQLMQD R S P L K E 1 0 0 0 0 0 0 2 0 0 2 1 0 0 3 1 1 0 0 0 0 0 11 0 1036.5917 Q15942;H0Y2Y8;C9JJK5 Q15942 344 354 ZYX Zyxin yes no 2 0.003854 49.06 By MS/MS 1 0.75755 0.73932 NaN 1 Median 0.75755 0.73932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2724400 1485600 1238800 2724400 1485600 1238800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31235 2978 32848 163423 164424 164424 1 SPGETSKPRPFAGGGYR GAKEHGAVAVERVTKSPGETSKPRPFAGGG GETSKPRPFAGGGYRLGAAPEEESAYVAGE K S P Y R L 1 2 0 0 0 0 1 4 0 0 0 1 0 1 3 2 1 0 1 0 0 0 17 2 1762.8751 Q9UNZ2;F2Z2K0 Q9UNZ2 140 156 NSFL1C NSFL1 cofactor p47 yes no 4 0.004697 25.866 By MS/MS 1 0.63661 0.71768 NaN 1 Median 0.63661 0.71768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 993400 428750 564650 993400 428750 564650 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31236 4353 32849 163424 164425 164425 1 SPGLYFLTAGDQGTLR AVLLPEEPVSQLGVKSPGLYFLTAGDQGTL PGLYFLTAGDQGTLRVWEAASGQCVYTQAQ K S P L R V 1 1 0 1 0 1 0 3 0 0 3 0 0 1 1 1 2 0 1 0 0 0 16 0 1694.8628 Q12788;J3KNP2;A0A087WYP7 Q12788 257 272 TBL3 Transducin beta-like protein 3 yes no 2 8.4051E-05 74.76 By MS/MS By matching By MS/MS 3 1 1 1.0723 1.1438 9.2692 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0723 1.1438 6.3023 3 1 Median 1.4753 1.2647 NaN 1 0 Median 0.95667 1.005 NaN 1 0 Median NaN NaN NaN 0 0 Median 25927000 12854000 13073000 0 0 0 0 0 0 21998000 10953000 11045000 779980 358510 421470 3148600 1543000 1605600 0 0 0 31237 2757 32850 163425;163426;163427;163428;163429 164426;164427;164428;164429;164430;164431;164432 164427 7 SPGMLEPLGSSR FSRPSMSPTPLDRCRSPGMLEPLGSSRTPM RCRSPGMLEPLGSSRTPMSVLQQAGGSMMD R S P S R T 0 1 0 0 0 0 1 2 0 0 2 0 1 0 2 3 0 0 0 0 0 0 12 0 1229.6074 Q9UQ35 Q9UQ35 2132 2143 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 1.8897E-10 112.3 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31238 4359 32851 163430;163431 164433;164434 164433 2 SPGPSHPTFWTYTEAAHR FCTLPQPVASPIGPRSPGPSHPTFWTYTEA PSHPTFWTYTEAAHRAVLFPQQRLDQLSEI R S P H R A 2 1 0 0 0 0 1 1 2 0 0 0 0 1 3 2 3 1 1 0 0 0 18 0 2040.9442 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 1940 1957 SRCAP Helicase SRCAP yes no 4 2.9812E-06 52.862 By MS/MS By matching 2 1 0.62227 0.65599 17.844 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6884 0.74413 17.828 2 0 Median NaN NaN NaN 0 0 Median 0.57186 0.59794 NaN 1 0 Median NaN NaN NaN 0 0 Median 17476000 9537200 7938600 0 0 0 0 0 0 15780000 8510000 7270400 0 0 0 1695400 1027200 668210 0 0 0 31239 3199 32852 163432;163433;163434 164435;164436 164436 2 SPGSPVGEGTGSPPK NLVLLNPEKYKAKSRSPGSPVGEGTGSPPK SPGSPVGEGTGSPPKWQIGEQEFEALMRML R S P P K W 0 0 0 0 0 0 1 4 0 0 0 1 0 0 4 3 1 0 0 1 0 0 15 0 1352.6572 E7EV99;E7ENY0;P35611;A0A0A0MSR2;H0Y9H2 E7EV99 355 369 ADD1 Alpha-adducin yes no 2 0.022473 40.589 By MS/MS 1 0.34856 0.36242 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34856 0.36242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 724080 504480 219600 0 0 0 0 0 0 724080 504480 219600 0 0 0 0 0 0 0 0 0 31240 866 32853 163435 164437 164437 1 SPGTQEMLR AVKALKLESENRNGRSPGTQEMLRMWYELD ENRNGRSPGTQEMLRMWYELDEESRRKYQK R S P L R M 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 9 0 1017.4913 O95602;B9ZVN9 O95602 1114 1122 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.0011181 85.064 By MS/MS 1 0.81032 0.89783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81032 0.89783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3492000 1839000 1653000 0 0 0 0 0 0 3492000 1839000 1653000 0 0 0 0 0 0 0 0 0 31241 1781 32854 163436 164438;164439 164438 2 SPGVAAAVAEDGGLK ______________________________ SPGVAAAVAEDGGLKKCKISSYCRSQPPAR K S P L K K 4 0 0 1 0 0 1 3 0 0 1 1 0 0 1 1 0 0 0 2 0 0 15 0 1340.6936 Q9BTE7;E9PM04;E9PQV9;E9PLH8;E9PM78;H0YD80;E9PLS2 Q9BTE7 9 23 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 2 2.3989E-08 105.2 By MS/MS 2 0.37151 0.34857 21.482 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37151 0.34857 21.482 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22241000 17052000 5189100 0 0 0 0 0 0 22241000 17052000 5189100 0 0 0 0 0 0 0 0 0 31242 3826 32855 163437;163438 164440;164441 164441 2 SPGVAAAVAEDGGLKK ______________________________ PGVAAAVAEDGGLKKCKISSYCRSQPPARL K S P K K C 4 0 0 1 0 0 1 3 0 0 1 2 0 0 1 1 0 0 0 2 0 0 16 1 1468.7886 Q9BTE7;E9PM04;E9PQV9;E9PLH8;E9PM78;H0YD80;E9PLS2 Q9BTE7 9 24 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 2;3 2.9935E-13 96.745 By MS/MS By MS/MS 1 2 1.0265 0.97215 2.8966 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95677 0.95244 NaN 1 0 Median 1.1014 0.99227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20171000 9582300 10589000 0 0 0 0 0 0 13685000 6552900 7131600 6486800 3029400 3457400 0 0 0 0 0 0 31243 3826 32856 163439;163440;163441 164442;164443;164444;164445 164445 4 SPGVDPKQLAAELQK HLELHEPPKAVDKAKSPGVDPKQLAAELQK SPGVDPKQLAAELQKVSLQQSPLVLSSVVE K S P Q K V 2 0 0 1 0 2 1 1 0 0 2 2 0 0 2 1 0 0 0 1 0 0 15 1 1579.857 Q9Y6V0 Q9Y6V0 4616 4630 PCLO Protein piccolo yes yes 3 0.051181 13.418 By MS/MS 1 1.2199 1.1613 NaN 1 Median 1.2199 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19842000 8685800 11156000 19842000 8685800 11156000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31244 4496 32857 163442 164446 164446 1 SPHFFQPTNQQFK NSNYGWRALRLLARRSPHFFQPTNQQFKSL RRSPHFFQPTNQQFKSLPEYLENMVIKLAK R S P F K S 0 0 1 0 0 3 0 0 1 0 0 1 0 3 2 1 1 0 0 0 0 0 13 0 1604.7736 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 504 516 THOC1 THO complex subunit 1 yes no 2;3 0.046427 39.937 By MS/MS By MS/MS By matching 2 1 1 0.67504 0.62365 40.284 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69534 0.69911 5.2485 2 1 Median 0.66651 0.57738 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.35771 0.29981 NaN 1 0 Median 61854000 35216000 26638000 0 0 0 0 0 0 56285000 32030000 24255000 5252800 2940300 2312500 0 0 0 316540 245490 71049 31245 62 32858 163443;163444;163445;163446 164447;164448 164448 2 SPHFQVVNEETPKDK SDGKSYVITGSWNPKSPHFQVVNEETPKDK SPHFQVVNEETPKDKVLFMTTAVDLVITEV K S P D K V 0 0 1 1 0 1 2 0 1 0 0 2 0 1 2 1 1 0 0 2 0 0 15 1 1753.8635 Q9Y3P9 Q9Y3P9 389 403 RABGAP1 Rab GTPase-activating protein 1 yes yes 3 0.069124 10.593 By MS/MS 1 0.48518 0.45361 NaN 1 Median NaN NaN NaN 0 0 Median 0.48518 0.45361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2271800 1730900 540910 0 0 0 2271800 1730900 540910 0 0 0 0 0 0 0 0 0 0 0 0 31246 4432 32859 163447 164449 164449 1 SPHIETYLKK VVVQVLDARDPMGTRSPHIETYLKKEKPWK PMGTRSPHIETYLKKEKPWKHLIFVLNKCD R S P K K E 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 1 1 0 1 0 0 0 10 1 1214.6659 Q13823;H0YG10 Q13823 234 243 GNL2 Nucleolar GTP-binding protein 2 yes no 3 0.0032246 39.937 By matching By MS/MS By MS/MS 1 2 2 1.01 1.0562 20.062 5 Median NaN NaN NaN 0 0 Median 1.01 0.97235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77705 0.84979 30.753 2 0 Median 1.2226 1.0969 3.4745 2 0 Median 10197000 5528900 4668100 0 0 0 310690 168830 141860 0 0 0 0 0 0 6970200 4040000 2930200 2916000 1320000 1596000 31247 2839 32860 163448;163449;163450;163451;163452 164450;164451;164452;164453 164450 4 SPHQLLSPSSFSPSATPSQK STPETPLTKRSVSTRSPHQLLSPSSFSPSA LSPSSFSPSATPSQKYNSRSNRGEVVTSFG R S P Q K Y 1 0 0 0 0 2 0 0 1 0 2 1 0 1 4 7 1 0 0 0 0 0 20 0 2082.0382 Q14181;A0A3B3ITS5;E9PIQ6 Q14181 141 160 POLA2 DNA polymerase alpha subunit B yes no 3 5.8034E-05 37.999 By matching By MS/MS 1 1 0.29752 0.26437 86.419 2 Median 0.15486 0.14349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57159 0.48708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56258000 48073000 8185500 53595000 46305000 7289800 0 0 0 0 0 0 2663200 1767500 895690 0 0 0 0 0 0 31248 2862 32861 163453;163454 164454;164455 164454 2 SPHVFYR SLFGEAPQNLSQTQRSPHVFYRHDLINQLQ QNLSQTQRSPHVFYRHDLINQLQHNHALVT R S P Y R H 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 1 0 0 7 0 904.45554 Q93008 Q93008 593 599 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.0070901 96.048 By MS/MS 1 1.138 0.94378 NaN 1 Median NaN NaN NaN 0 0 Median 1.138 0.94378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6964000 3308200 3655800 0 0 0 6964000 3308200 3655800 0 0 0 0 0 0 0 0 0 0 0 0 31249 3573 32862 163455 164456 164456 1 SPIAEAVFR ATKSVLFVCLGNICRSPIAEAVFRKLVTDQ LGNICRSPIAEAVFRKLVTDQNISENWRVD R S P F R K 2 1 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 9 0 988.53418 P24666;G5E9R5;F2Z2Q9;D3YTI2 P24666 20 28 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS 2 1 1 1.0512 0.95484 12.684 4 Median 1.1175 1.0668 16.678 2 0 Median 1.0893 0.90213 NaN 1 0 Median 0.95073 0.96163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 161890000 78412000 83481000 113150000 56051000 57094000 28179000 12681000 15497000 20569000 9679600 10889000 0 0 0 0 0 0 0 0 0 31250 2125 32863 163456;163457;163458;163459 164457;164458;164459;164460;164461;164462;164463;164464;164465;164466;164467 164465 11 SPIAEAVFRK ATKSVLFVCLGNICRSPIAEAVFRKLVTDQ GNICRSPIAEAVFRKLVTDQNISENWRVDS R S P R K L 2 1 0 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 1 0 0 10 1 1116.6291 P24666;G5E9R5;F2Z2Q9;D3YTI2 P24666 20 29 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2 0.0087943 49.418 By matching By MS/MS By matching 1 1 1 1.0901 1.0763 10.19 3 Median 1.0901 1.0763 NaN 1 0 Median 1.3679 1.207 NaN 1 0 Median 0.99672 0.98503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15185000 6623000 8562100 10517000 4542400 5974300 3549100 1553200 1995800 1119400 527450 591910 0 0 0 0 0 0 0 0 0 31251 2125 32864 163460;163461;163462 164468 164468 1 SPIEFLENAYEK FSPIPFLGHAIAFGKSPIEFLENAYEKYGP FGKSPIEFLENAYEKYGPVFSFTMVGKTFT K S P E K Y 1 0 1 0 0 0 3 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 12 0 1438.698 A0A0C4DFL7;Q16850;A0A3B3ITR4 A0A0C4DFL7 86 97 CYP51A1 Lanosterol 14-alpha demethylase yes no 2 0.0010777 57.348 By MS/MS 1 0.85228 0.72904 NaN 1 Median NaN NaN NaN 0 0 Median 0.85228 0.72904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2776400 1520900 1255500 0 0 0 2776400 1520900 1255500 0 0 0 0 0 0 0 0 0 0 0 0 31252 227 32865 163463 164469 164469 1 SPILLGSLAHQIYR AKDLGLAQDSATSTKSPILLGSLAHQIYRM KSPILLGSLAHQIYRMMCAKGYSKKDFSSV K S P Y R M 1 1 0 0 0 1 0 1 1 2 3 0 0 0 1 2 0 0 1 0 0 0 14 0 1566.8882 P31937 P31937 298 311 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes yes 2;3 1.8593E-08 138.71 By MS/MS By matching By matching 2 2 1 0.83486 0.77984 18.341 5 Median 0.82813 0.77401 1.0627 2 0 Median 1.2019 1.0006 20.62 2 0 Median 0.76575 0.7348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93429000 51583000 41846000 75877000 43135000 32742000 16679000 7886900 8792100 872990 561170 311830 0 0 0 0 0 0 0 0 0 31253 2206 32866 163464;163465;163466;163467;163468 164470;164471;164472;164473 164471 4 SPILVATAVAAR QRDREEALHQFRSGKSPILVATAVAARGLD SGKSPILVATAVAARGLDISNVKHVINFDL K S P A R G 4 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1167.6976 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;O15523;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 491 502 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 3.1802E-06 119.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 6 6 1.0711 1.0003 25.694 22 Median 0.87928 0.8272 NaN 1 0 Median 1.1112 0.96364 28.524 2 0 Median 1.0694 1.0069 3.6664 3 0 Median 1.0265 0.87287 19.886 4 0 Median 1.1952 1.2185 24.068 6 0 Median 0.95346 0.80724 14.987 6 0 Median 480930000 231780000 249150000 38652000 19954000 18698000 81423000 41488000 39936000 146200000 68806000 77397000 29241000 14695000 14546000 95622000 41982000 53640000 89791000 44859000 44932000 31254 263 32867 163469;163470;163471;163472;163473;163474;163475;163476;163477;163478;163479;163480;163481;163482;163483;163484;163485;163486;163487;163488;163489;163490;163491 164474;164475;164476;164477;164478;164479;164480;164481;164482;164483;164484;164485;164486;164487;164488;164489;164490;164491;164492;164493;164494;164495;164496;164497;164498;164499;164500;164501;164502;164503 164481 30 SPISVPGGSALISNLGK TTVVGGVTKTITLVKSPISVPGGSALISNL ISVPGGSALISNLGKVMSVVQTKPVQTSAV K S P G K V 1 0 1 0 0 0 0 3 0 2 2 1 0 0 2 4 0 0 0 1 0 0 17 0 1595.8883 A6NEM2;P51610 A6NEM2 666 682 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 2.5172E-10 100.93 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 3 2 2 1 0.69173 0.67533 18.621 12 Median 0.62132 0.62563 17.659 3 0 Median 0.70087 0.62135 NaN 1 0 Median 0.64121 0.68337 26.576 3 0 Median 0.8997 0.77111 7.7144 2 0 Median 0.66151 0.69076 20.17 2 0 Median 0.68271 0.58933 NaN 1 0 Median 48024000 26569000 21455000 6732400 3536500 3195900 526270 306190 220080 35468000 19913000 15555000 1348200 696550 651620 3606400 1919800 1686600 342490 196400 146080 31255 509;2438 32868 163492;163493;163494;163495;163496;163497;163498;163499;163500;163501;163502;163503 164504;164505;164506;164507;164508;164509;164510;164511;164512;164513;164514 164510 11 SPITGNDLSPPVSFNLMFK GQQELADLFVNYNVKSPITGNDLSPPVSFN GNDLSPPVSFNLMFKTFIGPGGNMPGYLRP K S P F K T 0 0 2 1 0 0 0 1 0 1 2 1 1 2 3 3 1 0 0 1 0 0 19 0 2063.0398 P41250 P41250 265 283 GARS Glycine--tRNA ligase yes yes 2 0.0022379 30.828 By matching By MS/MS 2 2 0.68808 0.65047 4.2421 4 Median 0.67777 0.65047 2.2176 2 0 Median 0.72341 0.64808 6.9952 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5346000 2880300 2465700 3979200 2200100 1779100 1366800 680200 686600 0 0 0 0 0 0 0 0 0 0 0 0 31256 2301 32869 163504;163505;163506;163507 164515 164515 1 SPKPLLTGLMWAQQGTTPGTPK WGTYRPHVYFGMKTRSPKPLLTGLMWAQQG GLMWAQQGTTPGTPKLRHTCEQGDGVGPYG R S P P K L 1 0 0 0 0 2 0 3 0 0 3 2 1 0 4 1 4 1 0 0 0 0 22 1 2308.2249 Q13724;A0A3B3IS52;A0A3B3ITC1;A0A3B3IRI7;A0A3B3ITU6;B8ZZE2 Q13724 111 132 MOGS Mannosyl-oligosaccharide glucosidase yes no 3 9.8313E-07 39.647 By MS/MS By MS/MS By matching 1 1 1 0.70653 0.72834 14.755 3 Median 0.70653 0.72834 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55914 0.63966 NaN 1 0 Median 0.87894 0.85864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8342600 5131500 3211100 4929700 2893800 2035900 0 0 0 3066500 2063200 1003300 346380 174520 171860 0 0 0 0 0 0 31257 2835 32870 163508;163509;163510 164516;164517 164516 2 SPLAQMEEER YNGVDNNKNKGQLTKSPLAQMEEERREHVA GQLTKSPLAQMEEERREHVAKMKKMEMEME K S P E R R 1 1 0 0 0 1 3 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 10 0 1188.5445 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2 E7ES33 314 323 SEPT7 Septin-7 yes no 2 2.3245E-10 173.37 By MS/MS By MS/MS 1 2 1.1345 0.97539 31.38 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79783 0.77916 NaN 1 0 Median 1.3794 1.1885 27.945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56893000 28121000 28772000 0 0 0 0 0 0 27619000 14921000 12697000 29274000 13200000 16075000 0 0 0 0 0 0 31258 870 32871 163511;163512;163513 164518;164519;164520;164521;164522 164522 5 SPLAQMEEERR YNGVDNNKNKGQLTKSPLAQMEEERREHVA QLTKSPLAQMEEERREHVAKMKKMEMEMEQ K S P R R E 1 2 0 0 0 1 3 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 11 1 1344.6456 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRM2 E7ES33 314 324 SEPT7 Septin-7 yes no 2;3 3.9849E-40 218.47 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 4 2 1 0.90347 0.91236 23.399 13 Median 0.87732 0.88596 4.1535 2 1 Median 1.0477 0.94483 NaN 1 0 Median 0.83213 0.90096 3.5262 3 0 Median 1.103 1.0219 10.957 4 0 Median 0.60371 0.64206 36.299 2 0 Median 1.5748 1.3923 NaN 1 0 Median 468560000 236780000 231780000 4428500 2050600 2377900 1801200 913640 887540 162860000 88716000 74146000 287760000 138740000 149030000 9984900 5672600 4312300 1724200 694200 1030000 31259 870 32872 163514;163515;163516;163517;163518;163519;163520;163521;163522;163523;163524;163525;163526 164523;164524;164525;164526;164527;164528;164529;164530;164531;164532;164533;164534;164535;164536;164537;164538;164539;164540 164529 18 SPLELEPEAK KTSEIVLRPRNKRSRSPLELEPEAKKLCAK NKRSRSPLELEPEAKKLCAKGSGPSRRCDS R S P A K K 1 0 0 0 0 0 3 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 10 0 1111.5761 Q92466;A0A087X0X5;A0A087WW71;A0A087WTQ7;A0A087WV56 Q92466 26 35 DDB2 DNA damage-binding protein 2 yes no 2 0.0022775 76.221 By MS/MS 1 0.5317 0.52566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5317 0.52566 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3766000 2394300 1371800 0 0 0 0 0 0 3766000 2394300 1371800 0 0 0 0 0 0 0 0 0 31260 3527 32873 163527 164541 164541 1 SPLFSVQR LSELEAAPYLPQEEKSPLFSVQREGLPEDG YLPQEEKSPLFSVQREGLPEDGTLYRINRF K S P Q R E 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 0 1 0 0 8 0 932.50797 Q8WUA4;A0A087WZD8 Q8WUA4 355 362 GTF3C2 General transcription factor 3C polypeptide 2 yes no 2 0.0025526 107.32 By matching By MS/MS By matching 1 1 1 1.46 1.1809 23.841 3 Median NaN NaN NaN 0 0 Median 1.46 1.1809 NaN 1 0 Median 0.99907 1.0616 NaN 1 0 Median 1.9839 1.6746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9698300 4451800 5246500 0 0 0 602970 231390 371580 8752300 4086600 4665700 343010 133850 209160 0 0 0 0 0 0 31261 3487 32874 163528;163529;163530 164542;164543 164543 2 SPLGEVAIR FSAMEFLDGDGGSLRSPLGEVAIRDIVQFV DGGSLRSPLGEVAIRDIVQFVPFRQFQNAP R S P I R D 1 1 0 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 9 0 940.53418 O75131 O75131 476 484 CPNE3 Copine-3 yes yes 2 0.0024558 71.877 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 0.92828 0.84602 8.8865 6 Median 0.90728 0.86398 12.309 2 1 Median 1.0145 0.85393 NaN 1 0 Median 0.85752 0.86486 NaN 1 0 Median 0.97702 0.83819 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88196 0.72417 NaN 1 0 Median 50424000 26785000 23638000 28269000 15414000 12855000 9886600 4922900 4963700 9197200 4998300 4198900 2763500 1335600 1427900 0 0 0 307440 114800 192630 31262 1645 32875 163531;163532;163533;163534;163535;163536 164544;164545;164546;164547;164548;164549;164550 164549 7 SPLIESTANMDNNQSQK QKKQNLLHSEKRDKKSPLIESTANMDNNQS LIESTANMDNNQSQKTFKNKETLIIEPEKN K S P Q K T 1 0 3 1 0 2 1 0 0 1 1 1 1 0 1 3 1 0 0 0 0 0 17 0 1875.8633 O14974;F8VZN8 O14974 299 315 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 6.3928E-08 79.82 By MS/MS 1 0.68633 0.58103 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68633 0.58103 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1863400 964870 898510 0 0 0 0 0 0 0 0 0 1863400 964870 898510 0 0 0 0 0 0 31263 1508 32876 163537 164551 164551 1 SPLLAGGSPPQPVVPAHK PRSISGPSVGVMEMRSPLLAGGSPPQPVVP LAGGSPPQPVVPAHKDKSGAPPVRSIYDDI R S P H K D 2 0 0 0 0 1 0 2 1 0 2 1 0 0 5 2 0 0 0 2 0 0 18 0 1750.973 Q8NFH5;F8WCF5;F8WEL4;C9IYQ7;C9JIY9 Q8NFH5 66 83 NUP35 Nucleoporin NUP53 yes no 2;3 2.6165E-06 55.344 By MS/MS By MS/MS 2 2 0.47119 0.42765 15.732 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42111 0.40622 1.1259 2 1 Median 0.59354 0.50312 16.838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 122900000 83928000 38975000 0 0 0 0 0 0 105650000 73117000 32532000 17254000 10811000 6443400 0 0 0 0 0 0 31264 3437 32877 163538;163539;163540;163541 164552;164553;164554;164555;164556 164552 5 SPLLAGGSPPQPVVPAHKDK PRSISGPSVGVMEMRSPLLAGGSPPQPVVP GGSPPQPVVPAHKDKSGAPPVRSIYDDISS R S P D K S 2 0 0 1 0 1 0 2 1 0 2 2 0 0 5 2 0 0 0 2 0 0 20 1 1994.0949 Q8NFH5;F8WCF5;F8WEL4;C9IYQ7;C9JIY9 Q8NFH5 66 85 NUP35 Nucleoporin NUP53 yes no 3 8.7309E-09 75.215 By MS/MS By MS/MS 1 1 0.47726 0.46047 23.354 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37342 0.39038 NaN 1 0 Median 0.60997 0.54315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16054000 10015000 6039700 0 0 0 0 0 0 8066600 5439300 2627300 7987800 4575300 3412500 0 0 0 0 0 0 31265 3437 32878 163542;163543 164557;164558;164559 164559 3 SPLLNQPVPELSHASLIANQSPFR NSTMMQAVKTTPRQRSPLLNQPVPELSHAS ELSHASLIANQSPFRAPLNVTNTAGTSLPS R S P F R A 2 1 2 0 0 2 1 0 1 1 4 0 0 1 4 4 0 0 0 1 0 0 24 0 2614.3867 Q9NPI6 Q9NPI6 353 376 DCP1A mRNA-decapping enzyme 1A yes yes 3 0.034089 19.113 By MS/MS 1 0.38457 0.40671 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38457 0.40671 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3425400 2305800 1119600 0 0 0 0 0 0 3425400 2305800 1119600 0 0 0 0 0 0 0 0 0 31266 4054 32879 163544 164560 164560 1 SPLLPAVLEGLAK IVFVTYFRILKKAQRSPLLPAVLEGLAKFA QRSPLLPAVLEGLAKFAHLINVEFFDDLLV R S P A K F 2 0 0 0 0 0 1 1 0 0 4 1 0 0 2 1 0 0 0 1 0 0 13 0 1306.786 Q8WTT2 Q8WTT2 512 524 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.0012695 56.563 By matching By MS/MS By MS/MS 1 2 2 0.83302 0.89996 10.208 5 Median NaN NaN NaN 0 0 Median 1.1114 0.97195 NaN 1 0 Median 0.84892 0.9051 0.80564 2 0 Median NaN NaN NaN 0 0 Median 0.74427 0.77548 0.88678 2 0 Median NaN NaN NaN 0 0 Median 14799000 7728800 7070500 0 0 0 4754200 2136200 2618000 2836100 1478100 1358000 0 0 0 7209000 4114500 3094600 0 0 0 31267 3484 32880 163545;163546;163547;163548;163549 164561;164562 164561 2 SPLQSVVVR AVSELSPRERSPALKSPLQSVVVRRRSPRP RSPALKSPLQSVVVRRRSPRPSPVPKPSPP K S P V R R 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 0 0 0 3 0 0 9 0 983.57638 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 253 261 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.00043177 128.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1.1224 0.9886 7.3078 9 Median 1.0084 0.97503 NaN 1 0 Median 1.1918 1.0373 7.859 2 0 Median NaN NaN NaN 0 0 Median 1.099 0.9285 3.8614 2 0 Median 1.0464 1.07 6.2451 2 0 Median 1.2686 1.0429 7.5554 2 1 Median 48339000 22113000 26226000 4963100 2376300 2586900 8689900 3760700 4929200 0 0 0 4250400 1881300 2369100 25410000 11830000 13580000 5025700 2265100 2760600 31268 439 32881 163550;163551;163552;163553;163554;163555;163556;163557;163558;163559 164563;164564;164565;164566;164567;164568;164569;164570;164571;164572 164569 10 SPLSALAR KQHQKALPKKGVLGKSPLSALARKKARLSL KKGVLGKSPLSALARKKARLSLVIRSPSLL K S P A R K 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 8 0 813.47085 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 1290 1297 MYBBP1A Myb-binding protein 1A yes no 2 0.0023059 111.65 By MS/MS By matching By MS/MS 1 1 2 0.8204 0.716 123.46 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97821 1.0754 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.067376 0.073945 NaN 1 0 Median 0.8453 0.716 34.757 2 0 Median 27792000 17616000 10175000 0 0 0 0 0 0 16359000 7373100 8986200 0 0 0 10176000 9547600 628310 1256300 695590 560720 31269 3789 32882 163560;163561;163562;163563 164573;164574;164575 164573 3 SPLSQGDSSAPSLPK QPNSANMASLSAMGKSPLSQGDSSAPSLPK SPLSQGDSSAPSLPKQAASTSGPTPAASQA K S P P K Q 1 0 0 1 0 1 0 1 0 0 2 1 0 0 3 5 0 0 0 0 0 0 15 0 1469.7362 Q92793 Q92793 121 135 CREBBP CREB-binding protein yes yes 2 0.00025389 70.977 By MS/MS By MS/MS 1 2 0.66888 0.73939 40.14 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66888 0.73939 NaN 1 0 Median 0.47527 0.43963 37.69 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11816000 7305700 4509900 0 0 0 0 0 0 9837100 6072100 3765000 1978500 1233600 744890 0 0 0 0 0 0 31270 3557 32883 163564;163565;163566 164576;164577;164578 164578 3 SPLSWIEEK DQYMKMTVCLETEKKSPLSWIEEKGPGLKR LETEKKSPLSWIEEKGPGLKRNRYLSFHFK K S P E K G 0 0 0 0 0 0 2 0 0 1 1 1 0 0 1 2 0 1 0 0 0 0 9 0 1087.555 P53004 P53004 211 219 BLVRA Biliverdin reductase A yes yes 2 0.016126 67.169 By MS/MS 2 0.71208 0.69018 NaN 1 Median 0.71208 0.69018 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3303300 1982800 1320500 3303300 1982800 1320500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31271 2463 32884 163567;163568 164579;164580 164579 2 SPLTQEQLIPNLAMK EEHLQRVGHFDPVTRSPLTQEQLIPNLAMK SPLTQEQLIPNLAMKEVIDAFISENGWVED R S P M K E 1 0 1 0 0 2 1 0 0 1 3 1 1 0 2 1 1 0 0 0 0 0 15 0 1681.9073 Q9UNE7;H3BTA3 Q9UNE7 273 287 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 9.0839E-11 168.3 By MS/MS By matching By MS/MS By matching 2 2 1 2 0.8691 0.75532 22.351 7 Median 0.61329 0.57105 29.573 2 0 Median 0.86019 0.73195 4.4455 2 0 Median 0.8691 0.83836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0546 0.86232 12.267 2 0 Median 101780000 53617000 48159000 34534000 19207000 15327000 7107600 3919100 3188500 45021000 23353000 21668000 0 0 0 0 0 0 15114000 7138600 7975500 31272 4342 32885 163569;163570;163571;163572;163573;163574;163575 164581;164582;164583;164584 164582 4 SPLVAAMQHFLPVLK YQLVKNYEYKKPEERSPLVAAMQHFLPVLK SPLVAAMQHFLPVLKDRFIQLLSDQSDQSV R S P L K D 2 0 0 0 0 1 0 0 1 0 3 1 1 1 2 1 0 0 0 2 0 0 15 0 1649.9327 O95373;E9PLB2 O95373 168 182 IPO7 Importin-7 yes no 2 2.2017E-05 85.377 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.76669 0.7906 12.227 7 Median 0.74883 0.7369 20.702 2 0 Median 0.83683 0.72607 14.426 2 0 Median 0.76427 0.80473 2.5038 2 0 Median 0.74337 0.6675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10396000 5543300 4852800 7153200 3799500 3353700 1743400 907800 835600 1450300 809630 640710 49129 26407 22722 0 0 0 0 0 0 31273 1768 32886 163576;163577;163578;163579;163580;163581;163582 164585;164586;164587;164588 164586 4 SPLVAAMQHFLPVLKDR YQLVKNYEYKKPEERSPLVAAMQHFLPVLK LVAAMQHFLPVLKDRFIQLLSDQSDQSVLI R S P D R F 2 1 0 1 0 1 0 0 1 0 3 1 1 1 2 1 0 0 0 2 0 0 17 1 1921.0608 O95373;E9PLB2 O95373 168 184 IPO7 Importin-7 yes no 3 0.0011344 33.307 By MS/MS By matching 1 2 0.77121 0.69637 25.358 3 Median 0.85711 0.88874 NaN 1 0 Median 0.64594 0.61053 18.605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4254000 2772800 1481200 2067400 1176400 891030 2186600 1596500 590160 0 0 0 0 0 0 0 0 0 0 0 0 31274 1768 32887 163583;163584;163585 164589 164589 1 SPLVMDVLNIQGVQR SISTEFLALMKKVSKSPLVMDVLNIQGVQR SPLVMDVLNIQGVQRSLERLADLLGKIQKA K S P Q R S 0 1 1 1 0 2 0 1 0 1 2 0 1 0 1 1 0 0 0 3 0 0 15 0 1667.9029 Q14204 Q14204 1585 1599 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 2.1116E-26 195.51 By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 5 0.90235 0.86414 19.696 19 Median 0.84475 0.81756 29.452 5 1 Median 1.1155 0.9476 15.902 5 1 Median 0.82445 0.89442 15.415 4 1 Median 0.91862 0.89255 11.629 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117120000 65338000 51782000 70672000 40534000 30138000 16877000 8706300 8170400 25367000 13915000 11452000 4203900 2182400 2021500 0 0 0 0 0 0 31275 2865 32888;32889 163586;163587;163588;163589;163590;163591;163592;163593;163594;163595;163596;163597;163598;163599;163600;163601;163602;163603;163604;163605 164590;164591;164592;164593;164594;164595;164596;164597;164598;164599;164600;164601;164602;164603;164604;164605;164606;164607;164608;164609;164610;164611;164612;164613;164614;164615;164616 164591 1561 27 SPLYLVSR RPSQCSEFIQQSSMKSPLYLVSRSLPSSSQ IQQSSMKSPLYLVSRSLPSSSQLKGSPQAI K S P S R S 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 1 0 0 8 0 933.52837 Q8WYP5 Q8WYP5 1142 1149 AHCTF1 Protein ELYS yes yes 2 0.020469 75.213 By MS/MS 3 0.87117 0.9459 6.9379 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87117 0.9459 6.9379 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11000000 5109200 5890500 0 0 0 0 0 0 11000000 5109200 5890500 0 0 0 0 0 0 0 0 0 31276 3524 32890 163606;163607;163608 164617;164618;164619 164619 3 SPMEFVEYNK MSSFVETKAMEQLTKSPMEFVEYNKQQLSR EQLTKSPMEFVEYNKQQLSRIYPKGTRVDS K S P N K Q 0 0 1 0 0 0 2 0 0 0 0 1 1 1 1 1 0 0 1 1 0 0 10 0 1242.5591 Q01970 Q01970 632 641 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.0034879 56.563 By matching By matching By MS/MS 1 1 1 1.1519 1.3722 18.602 3 Plateau NaN NaN NaN 0 0 Median 1.5985 1.2929 NaN 1 0 Median 1.1419 1.3722 NaN 1 0 Median 1.1519 0.9691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9009800 3790700 5219100 0 0 0 2124600 819450 1305200 5391600 2262800 3128800 1493600 708410 785150 0 0 0 0 0 0 31277 2695 32891 163609;163610;163611 164620;164621 164620 2 SPNLWLK IELFYKFVPLLPGNRSPNLWLKDVLKEEGV VPLLPGNRSPNLWLKDVLKEEGVSFLINTF R S P L K D 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 7 0 856.48069 P78527 P78527 1203 1209 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0019633 116.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1.0767 1.1214 17.251 7 Median 0.91245 0.91535 NaN 1 0 Median 1.4348 1.27 NaN 1 0 Median 0.79241 0.86273 8.0826 2 0 Median 1.2792 1.2502 NaN 1 0 Median 1.0767 1.1281 NaN 1 0 Median 1.3079 1.1214 NaN 1 0 Median 95265000 49913000 45352000 19885000 11271000 8614300 11369000 4705400 6663300 52828000 29183000 23645000 4520200 1962800 2557400 5587300 2347200 3240100 1075100 443480 631670 31278 2647 32892 163612;163613;163614;163615;163616;163617;163618 164622;164623;164624;164625;164626;164627;164628;164629;164630;164631;164632;164633 164624 12 SPNQNVQQAAAGALR VYQLGGICKLVDLLRSPNQNVQQAAAGALR SPNQNVQQAAAGALRNLVFRSTTNKLETRR R S P L R N 4 1 2 0 0 3 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1523.7805 Q13835 Q13835 298 312 PKP1 Plakophilin-1 yes yes 2 0.00091208 58.37 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1769500 1769500 0 0 0 0 573830 573830 0 0 0 0 0 0 0 0 0 0 1195600 1195600 0 31279 2841 32893 163619;163620 164634;164635 164634 2 SPNRDFLTHVSAR IWGAEYQESNALLLRSPNRDFLTHVSARER LRSPNRDFLTHVSARERCPACFVGTITGDR R S P A R E 1 2 1 1 0 0 0 0 1 0 1 0 0 1 1 2 1 0 0 1 0 0 13 1 1498.7641 O15067 O15067 569 581 PFAS Phosphoribosylformylglycinamidine synthase yes yes 3 0.0029133 52.265 By MS/MS 1 1.0657 1.1841 NaN 1 Median 1.0657 1.1841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5259200 2630900 2628300 5259200 2630900 2628300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31280 1518 32894 163621 164636 164636 1 SPNTEEIFNMLTK AELSCRYKDLRTAYRSPNTEEIFNMLTKET YRSPNTEEIFNMLTKETPETFYIGKLIICN R S P T K E 0 0 2 0 0 0 2 0 0 1 1 1 1 1 1 1 2 0 0 0 0 0 13 0 1522.7337 Q7KZ85 Q7KZ85 1143 1155 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.00021827 80.763 By MS/MS By MS/MS By MS/MS 1 1 1 0.9321 0.89768 5.9995 3 Median 0.9321 0.89768 NaN 1 0 Median 1.0406 0.92186 NaN 1 0 Median 0.73995 0.82202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23626000 11893000 11733000 3728400 1802500 1925900 12901000 6231000 6670200 6996400 3859600 3136900 0 0 0 0 0 0 0 0 0 31281 3213 32895 163622;163623;163624 164637;164638;164639 164639 3 SPPDQPAVPHPPPSTPIK GSEENLDEAREQKEKSPPDQPAVPHPPPST DQPAVPHPPPSTPIKLEEAGDGCAREYLLP K S P I K L 1 0 0 1 0 1 0 0 1 1 0 1 0 0 8 2 1 0 0 1 0 0 18 0 1860.9734 E7EV99;E7ENY0;P35611;H0Y9H2;H0YG19 E7EV99 600 617 ADD1 Alpha-adducin yes no 3 9.2E-05 39.657 By MS/MS By MS/MS 1 1 0.40497 0.39554 56.724 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53687 0.59072 NaN 1 1 Median 0.30548 0.26484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9091100 5681000 3410100 0 0 0 0 0 0 5973200 3304600 2668500 3117900 2376300 741550 0 0 0 0 0 0 31282 866 32896 163625;163626 164640;164641 164641 2 SPPEALVQGR KADQEEQIHPRSRLRSPPEALVQGRYPHIK RSRLRSPPEALVQGRYPHIKDGEDLKDHST R S P G R Y 1 1 0 0 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1052.5615 Q9UHB6;F8VRN8 Q9UHB6 132 141 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0027284 59.245 By matching By MS/MS 1 1 0.95453 0.9403 23.45 2 Median NaN NaN NaN 0 0 Median 1.224 1.1099 NaN 1 0 Median 0.74437 0.79663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2646600 1283600 1363000 0 0 0 871200 345380 525820 1775300 938190 837160 0 0 0 0 0 0 0 0 0 31283 4273 32897 163627;163628 164642 164642 1 SPPGQVTEAVK NNGAKMPILGLGTWKSPPGQVTEAVKVAID GTWKSPPGQVTEAVKVAIDVGYRHIDCAHV K S P V K V 1 0 0 0 0 1 1 1 0 0 0 1 0 0 2 1 1 0 0 2 0 0 11 0 1111.5873 P15121;E9PCX2;E9PEF9 P15121 23 33 AKR1B1 Aldose reductase yes no 2 0.0041947 48.423 By MS/MS By MS/MS By matching 1 2 1 0.81632 0.68908 57.647 4 Median 0.652 0.60908 NaN 1 0 Median 0.81632 0.68908 17.239 2 0 Median 2.0985 2.0465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13953000 7558600 6394100 7890000 4730600 3159400 4911500 2523800 2387700 1151100 304130 846990 0 0 0 0 0 0 0 0 0 31284 2015 32898 163629;163630;163631;163632 164643;164644;164645;164646;164647 164644 5 SPPIKPLLGMNPFQK YTSHFDLMKMTAGKRSPPIKPLLGMNPFQK SPPIKPLLGMNPFQKNPKHASVLAESGINY R S P Q K N 0 0 1 0 0 1 0 1 0 1 2 2 1 1 4 1 0 0 0 0 0 0 15 1 1665.9276 Q96L91 Q96L91 2476 2490 EP400 E1A-binding protein p400 yes yes 3 0.0001499 49.298 By MS/MS 1 0.41403 0.47001 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41403 0.47001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5661900 4061100 1600800 0 0 0 0 0 0 5661900 4061100 1600800 0 0 0 0 0 0 0 0 0 31285 3700 32899 163633 164648 164648 1 SPPILPTLDSLK NFSLTMMVIFFLQRRSPPILPTLDSLKTLA QRRSPPILPTLDSLKTLADAEDKCVIEGNN R S P L K T 0 0 0 1 0 0 0 0 0 1 3 1 0 0 3 2 1 0 0 0 0 0 12 0 1279.7388 Q9NVV4 Q9NVV4 392 403 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.0014698 52.79 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.81683 0.73763 19.211 4 Median 0.67839 0.64433 NaN 1 0 Median 1.085 0.93002 NaN 1 0 Median 0.63346 0.63561 NaN 1 0 Median 0.98351 0.84443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16569000 9307200 7261800 7433100 4174900 3258200 3594400 1831900 1762600 5087000 3109000 1978000 454400 191360 263040 0 0 0 0 0 0 31286 4141 32900 163634;163635;163636;163637 164649;164650 164650 1 SPPIPLAK LAPEYEKAAKELSKRSPPIPLAKVDATAET AKELSKRSPPIPLAKVDATAETDLAKRFDV R S P A K V 1 0 0 0 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 8 0 821.50109 P13667;A0A499FI48 P13667 227 234 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.022726 44.692 By MS/MS By MS/MS By matching 1 2 1 0.71608 0.64218 21.355 4 Median 0.59959 0.57245 NaN 1 0 Median 0.88814 0.76554 8.5944 2 0 Median 0.47837 0.50852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16460000 9015900 7444100 3939100 2408300 1530800 9735300 4798500 4936800 2785600 1809100 976500 0 0 0 0 0 0 0 0 0 31287 1993 32901 163638;163639;163640;163641 164651;164652;164653;164654 164653 4 SPPLHEHPLYK FPPWDRGYKDPRFYRSPPLHEHPLYKDQAC RFYRSPPLHEHPLYKDQACYIFHHRCRLLE R S P Y K D 0 0 0 0 0 0 1 0 2 0 2 1 0 0 3 1 0 0 1 0 0 0 11 0 1316.6877 Q9BZE1;S4R369 Q9BZE1 90 100 MRPL37 39S ribosomal protein L37, mitochondrial yes no 3 0.0076641 32.127 By MS/MS By matching 1 1 0.9483 0.93023 24.071 2 Median NaN NaN NaN 0 0 Median 1.2788 1.1028 NaN 1 0 Median 0.70322 0.78464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3208800 1487400 1721400 0 0 0 1957500 821390 1136200 1251200 666010 585220 0 0 0 0 0 0 0 0 0 31288 3897 32902 163642;163643 164655 164655 1 SPPLIGSESAYESFLSADDKASGR PDSESPIEKVLSPLRSPPLIGSESAYESFL AYESFLSADDKASGRGAESPFEEKSGKQGS R S P G R G 3 1 0 2 0 0 2 2 0 1 2 1 0 1 2 6 0 0 1 0 0 0 24 1 2483.1816 P46821 P46821 1400 1423 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 3.6351E-12 58.284 By MS/MS By matching 1 1 0.89204 0.864 2.7744 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73199 0.84721 NaN 1 0 Median 1.0871 0.88112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4623300 2370600 2252700 0 0 0 0 0 0 4539700 2328000 2211700 83653 42671 40982 0 0 0 0 0 0 31289 2347 32903 163644;163645 164656;164657 164657 2 SPPLSPVGTTPVK NHDLTHRKSPSGPVKSPPLSPVGTTPVKLK VKSPPLSPVGTTPVKLKRAAPKEEAEAMNN K S P V K L 0 0 0 0 0 0 0 1 0 0 1 1 0 0 4 2 2 0 0 2 0 0 13 0 1278.7184 Q9BVC5;C9J4K0 Q9BVC5 189 201 C2orf49 Ashwin yes no 2 0.0058203 57.348 By MS/MS By MS/MS 1 1 0.43859 0.38797 4.0846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39846 0.37693 NaN 1 1 Median 0.48277 0.39934 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6246500 4035600 2211000 0 0 0 0 0 0 4709900 3018200 1691700 1536600 1017400 519230 0 0 0 0 0 0 31290 3850 32904 163646;163647 164658;164659 164658 2 SPPPELTDTATSTK EESMTIDKNTKIPCKSPPPELTDTATSTKR KSPPPELTDTATSTKRCPKTRPRKEVKEEL K S P T K R 1 0 0 1 0 0 1 0 0 0 1 1 0 0 3 2 4 0 0 0 0 0 14 0 1443.7093 P46013 P46013 2588 2601 MKI67 Antigen KI-67 yes yes 2 8.9126E-06 103.91 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.69118 0.59465 28.699 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72016 0.80268 NaN 1 1 Median 0.52725 0.4672 28.423 2 0 Median 0.69118 0.73064 NaN 1 0 Median 0.69379 0.59465 NaN 1 0 Median 8732200 5252600 3479600 0 0 0 0 0 0 3346500 1918300 1428200 1856700 1156600 700110 2379300 1491500 887830 1149700 686250 463430 31291 2335 32905 163648;163649;163650;163651;163652;163653 164660;164661;164662;164663 164661 4 SPPPGMGLNQNR RRGGGGGRGGLHDFRSPPPGMGLNQNRGPM DFRSPPPGMGLNQNRGPMGPGPGQSGPKPP R S P N R G 0 1 2 0 0 1 0 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 12 0 1266.6139 P23246 P23246 33 44 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 3.2763E-06 157.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1 0.71739 0.70321 8.5576 7 Median NaN NaN NaN 0 0 Median 0.81375 0.70321 NaN 1 0 Median 0.62111 0.65593 12.125 3 0 Median 0.85077 0.73335 NaN 1 0 Median 0.63494 0.63942 NaN 1 0 Median 0.90037 0.7279 NaN 1 0 Median 106310000 62421000 43887000 0 0 0 6970700 3719700 3251000 46040000 28278000 17761000 23929000 12231000 11698000 23798000 14797000 9000900 5570200 3394600 2175600 31292 2107 32906 163654;163655;163656;163657;163658;163659;163660 164664;164665;164666;164667;164668;164669;164670;164671;164672;164673;164674;164675;164676;164677;164678;164679;164680;164681;164682;164683;164684;164685;164686;164687;164688 164665 25 SPPSTGSTYGSSQKEESAASGGAAYTK GSGSLSPSKKSPVGKSPPSTGSTYGSSQKE QKEESAASGGAAYTKRYLEEQKTENGKDKE K S P T K R 4 0 0 0 0 1 2 4 0 0 0 2 0 0 2 7 3 0 2 0 0 0 27 1 2605.178 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 320 346 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 0.014443 16.621 By matching By MS/MS By MS/MS 1 1 1 0.8629 0.85605 5.086 3 Median 0.8629 0.91373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76458 0.85605 NaN 1 0 Median 0.91444 0.8266 NaN 1 0 Median 5451100 2920800 2530400 1463100 779140 683920 0 0 0 0 0 0 0 0 0 2677100 1505000 1172100 1311000 636630 674370 31293 439 32907 163661;163662;163663 164689;164690;164691 164691 3 SPPSTGSTYGSSQKEESAASGGAAYTKR GSGSLSPSKKSPVGKSPPSTGSTYGSSQKE KEESAASGGAAYTKRYLEEQKTENGKDKEQ K S P K R Y 4 1 0 0 0 1 2 4 0 0 0 2 0 0 2 7 3 0 2 0 0 0 28 2 2761.2791 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 320 347 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 4 0.008407 20.85 By matching By MS/MS By matching 1 1 1 0.96933 1.0689 10.495 3 Median 0.96933 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76931 0.90658 NaN 1 0 Median 1.0419 1.0689 NaN 1 0 Median 5385900 2720900 2665000 1357500 675610 681890 0 0 0 0 0 0 0 0 0 3188200 1682300 1505900 840130 362920 477220 31294 439 32908 163664;163665;163666 164692;164693 164693 2 SPQENLVPCDVLLLR ASDEIVPGDIVSIGRSPQENLVPCDVLLLR SPQENLVPCDVLLLRGRCIVDEAMLTGESV R S P L R G 0 1 1 1 1 1 1 0 0 0 4 0 0 0 2 1 0 0 0 2 0 0 15 0 1751.924 Q9HD20 Q9HD20 328 342 ATP13A1 Manganese-transporting ATPase 13A1 yes yes 2 0.048135 23.376 By matching By MS/MS 1 1 1.0134 0.99051 26.47 2 Median NaN NaN NaN 0 0 Median 1.4032 1.1944 NaN 1 0 Median 0.73191 0.82143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2677600 1415600 1261900 0 0 0 1163400 450460 712900 1514200 965170 549040 0 0 0 0 0 0 0 0 0 31295 4034 32909 163667;163668 164694 164694 1 SPQFINLK GNVSCSENLVANTARSPQFINLKRDPRQAA LVANTARSPQFINLKRDPRQAAGRSQPVTT R S P L K R 0 0 1 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 8 0 945.52837 Q92576 Q92576 1642 1649 PHF3 PHD finger protein 3 yes yes 2 0.025397 63.148 By MS/MS 1 0.86551 0.96153 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86551 0.96153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6992300 3509300 3483000 0 0 0 0 0 0 6992300 3509300 3483000 0 0 0 0 0 0 0 0 0 31296 3539 32910 163669 164695 164695 1 SPQGLGAFTPVVR DLKPNTEYAFRLAARSPQGLGAFTPVVRQR ARSPQGLGAFTPVVRQRTLQSISPKNFKVK R S P V R Q 1 1 0 0 0 1 0 2 0 0 1 0 0 1 2 1 1 0 0 2 0 0 13 0 1327.7248 G8JL96;A0A0A0MR60;Q13332 G8JL96 585 597 PTPRS Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase S yes no 2 0.0015148 69.979 By MS/MS 1 0.90476 0.88242 NaN 1 Median 0.90476 0.88242 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3645600 2082000 1563700 3645600 2082000 1563700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31297 154 32911 163670 164696 164696 1 SPQHFHRPDQGINIYR SPVYSRHSYTPTTSRSPQHFHRPDQGINIY PQHFHRPDQGINIYRKPPIYKQHAALAAQS R S P Y R K 0 2 1 1 0 2 0 1 2 2 0 0 0 1 2 1 0 0 1 0 0 0 16 1 1963.9765 J3QSX6;H0Y7N6;F6XFR5 J3QSX6 131 146 ABLIM1 yes no 4 0.00011215 47.545 By matching By MS/MS By matching 1 1 1 0.95814 0.95695 9.4064 3 Median 0.99687 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85754 0.95695 NaN 1 0 Median 0.95814 0.849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11952000 7135400 4816500 1300800 737730 563080 0 0 0 8710300 5377800 3332500 1940800 1019800 920970 0 0 0 0 0 0 31298 1356 32912 163671;163672;163673 164697 164697 1 SPQISMSDIDLNLK KLKGPKFKMPDVHFKSPQISMSDIDLNLKG KSPQISMSDIDLNLKGPKIKGDMDISVPKL K S P L K G 0 0 1 2 0 1 0 0 0 2 2 1 1 0 1 3 0 0 0 0 0 0 14 0 1559.7865 Q09666 Q09666 4516 4529 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 9.3617E-08 98.353 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 4 2 1 0.92486 0.93176 71.751 12 Median NaN NaN NaN 0 0 Median 1.5066 1.2876 38.402 3 0 Median 0.92486 0.99605 3.4966 2 0 Median 0.98026 0.93176 23.889 4 0 Median 0.34422 0.36386 128.04 2 0 Median 0.21875 0.1934 NaN 1 0 Median 34970000 19954000 15016000 0 0 0 8054600 4515400 3539200 10138000 4559000 5578600 5211600 2649000 2562600 10980000 7802600 3177700 585690 428150 157550 31299 2749 32913;32914 163674;163675;163676;163677;163678;163679;163680;163681;163682;163683;163684;163685;163686 164698;164699;164700;164701;164702;164703;164704 164701 1466 7 SPQISMSDIDLNLKGPK KLKGPKFKMPDVHFKSPQISMSDIDLNLKG QISMSDIDLNLKGPKIKGDMDISVPKLEGD K S P P K I 0 0 1 2 0 1 0 1 0 2 2 2 1 0 2 3 0 0 0 0 0 0 17 1 1841.9557 Q09666 Q09666 4516 4532 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 9.1988E-13 115.14 By MS/MS By matching By MS/MS By matching 3 3 4 3 0.86506 0.92411 37.382 13 Median 0.7722 0.84122 25.19 3 0 Median 1.0157 0.96652 77.905 3 0 Median 0.89916 1.0204 11.961 4 0 Median 0.90022 0.83627 19.11 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123900000 63430000 60467000 55921000 29333000 26589000 5969000 2799200 3169900 60519000 30495000 30024000 1486800 802660 684170 0 0 0 0 0 0 31300 2749 32915;32916 163687;163688;163689;163690;163691;163692;163693;163694;163695;163696;163697;163698;163699 164705;164706;164707;164708;164709;164710;164711;164712;164713 164708 1466 9 SPQMVSAIVR HQLSKKEASRHAIMRSPQMVSAIVRTMQNT HAIMRSPQMVSAIVRTMQNTNDVETARCTA R S P V R T 1 1 0 0 0 1 0 0 0 1 0 0 1 0 1 2 0 0 0 2 0 0 10 0 1086.5856 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y7Z0 A0A2R8Y804 191 200 CTNNB1 Catenin beta-1 yes no 2 0.016333 38.303 By MS/MS 1 0.74214 0.70632 NaN 1 Median 0.74214 0.70632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6265700 3701200 2564500 6265700 3701200 2564500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31301 368 32917 163700 164714 164714 1 SPQNQYPAELMR RLMMEQRSRDPGMVRSPQNQYPAELMRRFE MVRSPQNQYPAELMRRFELYFQGPSSNKPR R S P M R R 1 1 1 0 0 2 1 0 0 0 1 0 1 0 2 1 0 0 1 0 0 0 12 0 1432.6769 P33993;C9J8M6 P33993 121 132 MCM7 DNA replication licensing factor MCM7 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS 2 1 3 0.68909 0.65608 18.63 6 Median 0.68909 0.65608 10.038 2 0 Median 0.90168 0.77937 NaN 1 0 Median 0.58029 0.59317 26.559 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104600000 64081000 40519000 50674000 31722000 18952000 10915000 5669700 5245700 43012000 26690000 16322000 0 0 0 0 0 0 0 0 0 31302 2225 32918;32919 163701;163702;163703;163704;163705;163706 164715;164716;164717;164718;164719;164720;164721;164722;164723;164724;164725;164726 164717 964 12 SPQPDPVDTPASTK DKPTTDEKTTKIACKSPQPDPVDTPASTKQ KSPQPDPVDTPASTKQRPKRNLRKADVEEE K S P T K Q 1 0 0 2 0 1 0 0 0 0 0 1 0 0 4 2 2 0 0 1 0 0 14 0 1438.694 P46013 P46013 2344 2357 MKI67 Antigen KI-67 yes yes 2 0.012463 40.589 By MS/MS 2 0.583 0.64379 12.836 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.583 0.64379 12.836 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3382500 2171500 1210900 0 0 0 0 0 0 3382500 2171500 1210900 0 0 0 0 0 0 0 0 0 31303 2335 32920 163707;163708 164727;164728 164727 2 SPQPDPVGTPTIFKPQSK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP PDPVGTPTIFKPQSKRSLRKADVEEESLAL R S P S K R 0 0 0 1 0 2 0 1 0 1 0 2 0 1 5 2 2 0 0 1 0 0 18 1 1923.0102 P46013 P46013 2223 2240 MKI67 Antigen KI-67 yes yes 3 1.0753E-06 79.511 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.47479 0.48942 19.393 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48065 0.55021 10.763 2 0 Median 0.45329 0.44274 8.3813 2 0 Median 0.59877 0.64151 NaN 1 0 Median 0.43876 0.39153 NaN 1 0 Median 49466000 31581000 17885000 0 0 0 0 0 0 40557000 26065000 14491000 3908400 2527700 1380700 4568100 2692500 1875600 433010 295770 137250 31304 2335 32921 163709;163710;163711;163712;163713;163714 164729;164730;164731;164732;164733;164734;164735 164729 7 SPQQTVPYVVPLSPK QSAKEDVTERQSTKRSPQQTVPYVVPLSPK SPQQTVPYVVPLSPKLPKTKEYASEGEPLF R S P P K L 0 0 0 0 0 2 0 0 0 0 1 1 0 0 4 2 1 0 1 3 0 0 15 0 1638.8981 Q9UQR0;B4DRC2;H0Y6S1 Q9UQR0 499 513 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.0022051 38.238 By MS/MS 1 0.35788 0.38006 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35788 0.38006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2495900 1944500 551350 0 0 0 0 0 0 2495900 1944500 551350 0 0 0 0 0 0 0 0 0 31305 4363 32922 163715 164736 164736 1 SPQQVLPSPDGRR RQASASRAWGLRFFRSPQQVLPSPDGRRAA FRSPQQVLPSPDGRRAAGVRLAVTRLEGVD R S P R R A 0 2 0 1 0 2 0 1 0 0 1 0 0 0 3 2 0 0 0 1 0 0 13 1 1435.7532 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 310 322 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 0.016842 34.898 By MS/MS 1 0.26348 0.24577 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26348 0.24577 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6517600 5258600 1259000 0 0 0 0 0 0 0 0 0 6517600 5258600 1259000 0 0 0 0 0 0 31306 2102 32923 163716 164737 164737 1 SPQSNSPVLLSR PEWRDPDKYCPSYNKSPQSNSPVLLSRLHF YNKSPQSNSPVLLSRLHFEKVPLGKGRRCV K S P S R L 0 1 1 0 0 1 0 0 0 0 2 0 0 0 2 4 0 0 0 1 0 0 12 0 1283.6834 D6R9T3;E7EMP6;Q96FZ2;D6RGK7;D6RAI0;D6RAZ3 D6R9T3 45 56 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes no 2 0.00078006 90.05 By MS/MS 1 0.51135 0.55413 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51135 0.55413 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4938300 2985900 1952500 0 0 0 0 0 0 4938300 2985900 1952500 0 0 0 0 0 0 0 0 0 31307 807 32924 163717 164738 164738 1 SPQTLAPVGEDAMK PKETAAGGLTLKEERSPQTLAPVGEDAMKT RSPQTLAPVGEDAMKTPSPAAEDAREPEAK R S P M K T 2 0 0 1 0 1 1 1 0 0 1 1 1 0 2 1 1 0 0 1 0 0 14 0 1442.7075 Q92797 Q92797 1243 1256 SYMPK Symplekin yes yes 2 9.0028E-10 108.56 By MS/MS 1 0.5513 0.58854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5513 0.58854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13907000 7891700 6015300 0 0 0 0 0 0 13907000 7891700 6015300 0 0 0 0 0 0 0 0 0 31308 3558 32925 163718 164739 164739 0 SPQTPELVEALAFR FSPVIIKEWAAYKGKSPQTPELVEALAFRE KSPQTPELVEALAFREWTCPNLKRLWLGKA K S P F R E 2 1 0 0 0 1 2 0 0 0 2 0 0 1 2 1 1 0 0 1 0 0 14 0 1556.8199 Q9NZB2;A0A0C4DG79 Q9NZB2 652 665 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes no 2 0.031182 26.043 By MS/MS By matching 1 1 0.78115 0.72355 8.9988 2 Median 0.69396 0.67895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87929 0.77109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2952200 1635500 1316700 2700200 1503500 1196600 0 0 0 0 0 0 252030 131990 120050 0 0 0 0 0 0 31309 4186 32926 163719;163720 164740;164741 164741 2 SPQVKPASTMGMGPLGK ALAAMNAAQVKPLGKSPQVKPASTMGMGPL QVKPASTMGMGPLGKGAGPVPPGKVGPATP K S P G K G 1 0 0 0 0 1 0 3 0 0 1 2 2 0 3 2 1 0 0 1 0 0 17 1 1684.864 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 503 519 TCOF1 Treacle protein no no 2;3 9.3907E-31 130.19 By matching By matching By MS/MS By MS/MS 1 1 3 1 0.61486 0.71303 19.881 5 Median 0.61331 0.60957 NaN 1 0 Median 0.49535 0.48311 NaN 1 0 Median 0.64674 0.7507 7.2819 2 2 Median 0.79695 0.74895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60214000 33556000 26659000 3813000 2052000 1760900 986550 715280 271270 52286000 29168000 23118000 3128800 1619700 1509000 0 0 0 0 0 0 31310 2816;891 32927 163721;163722;163723;163724;163725;163726 164742;164743;164744;164745 164744 4 SPQVPAAQQMLNFPEK VLADTPSGLVPLHLRSPQVPAAQQMLNFPE PQVPAAQQMLNFPEKNKEKPVDLQNFGLRT R S P E K N 2 0 1 0 0 3 1 0 0 0 1 1 1 1 3 1 0 0 0 1 0 0 16 0 1783.8927 Q92922 Q92922 573 588 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.0002183 52.463 By MS/MS By matching 1 1 0.76985 0.74459 22.925 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59252 0.63316 NaN 1 0 Median 1.0003 0.87562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11043000 5962800 5080500 0 0 0 0 0 0 10594000 5665600 4928700 449020 297170 151840 0 0 0 0 0 0 31311 3567 32928 163727;163728 164746;164747 164747 1776 2 SPSAQLMEQVAQLK HTHVVDITRTSPAAKSPSAQLMEQVAQLKS KSPSAQLMEQVAQLKSLSDTVEKLKDEVLK K S P L K S 2 0 0 0 0 3 1 0 0 0 2 1 1 0 1 2 0 0 0 1 0 0 14 0 1528.7919 E7EX90;Q14203;E7EWF7 E7EX90 1158 1171 DCTN1 Dynactin subunit 1 yes no 2 3.2478E-05 96.113 By MS/MS 3 0.9678 0.96017 10.83 3 Median 0.9678 0.96017 10.83 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24813000 12389000 12424000 24813000 12389000 12424000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31312 906 32929 163729;163730;163731 164748;164749;164750 164748 3 SPSDEYKDNLHQVSK MFFGKNKVMMVALGRSPSDEYKDNLHQVSK SPSDEYKDNLHQVSKRLRGEVGLLFTNRTK R S P S K R 0 0 1 2 0 1 1 0 1 0 1 2 0 0 1 3 0 0 1 1 0 0 15 1 1745.822 Q9UKD2 Q9UKD2 80 94 MRTO4 mRNA turnover protein 4 homolog yes yes 3 0.00010947 55.186 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.0294 0.94942 9.4107 5 Median NaN NaN NaN 0 0 Median 1.0161 0.9303 NaN 1 0 Median 0.99418 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0696 1.1395 NaN 1 0 Median 1.0704 0.92099 4.3 2 0 Median 15186000 7195500 7990200 0 0 0 2065500 979850 1085700 2511700 1105100 1406600 0 0 0 5155100 2482000 2673100 5453200 2628400 2824800 31313 4308 32930 163732;163733;163734;163735;163736 164751;164752;164753 164753 3 SPSDEYKDNLHQVSKR MFFGKNKVMMVALGRSPSDEYKDNLHQVSK PSDEYKDNLHQVSKRLRGEVGLLFTNRTKE R S P K R L 0 1 1 2 0 1 1 0 1 0 1 2 0 0 1 3 0 0 1 1 0 0 16 2 1901.9232 Q9UKD2 Q9UKD2 80 95 MRTO4 mRNA turnover protein 4 homolog yes yes 4 0.075861 8.0851 By MS/MS By MS/MS By matching 1 1 1 1.2717 1.1048 8.9849 3 Median NaN NaN NaN 0 0 Median 1.2717 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5633 1.2895 NaN 1 0 Median 0.93574 1.1048 NaN 1 0 Median NaN NaN NaN 0 0 Median 3546900 1481800 2065100 0 0 0 1058900 428700 630150 0 0 0 892050 266750 625300 1596000 786350 809600 0 0 0 31314 4308 32931 163737;163738;163739 164754;164755 164755 2 SPSDLHISPLAK KMMGGAGPGSSLEARSPSDLHISPLAKKLP EARSPSDLHISPLAKKLPPPPGSPLGHSPT R S P A K K 1 0 0 1 0 0 0 0 1 1 2 1 0 0 2 3 0 0 0 0 0 0 12 0 1263.6823 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 308 319 WIZ Protein Wiz yes no 2;3 0.00020783 85.377 By MS/MS By matching By MS/MS 3 1 4 0.68907 0.72336 27.908 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68208 0.73181 16.913 3 0 Median 0.69612 0.58627 NaN 1 0 Median 0.65191 0.67414 33.398 4 0 Median NaN NaN NaN 0 0 Median 36583000 21086000 15497000 0 0 0 0 0 0 18849000 10640000 8208600 1551400 831380 719970 16182000 9614000 6568300 0 0 0 31315 656 32932 163740;163741;163742;163743;163744;163745;163746;163747 164756;164757 164756 2 SPSDSGYSYETIGK DVGGYYYEKIERTTKSPSDSGYSYETIGKT KSPSDSGYSYETIGKTTKTPEDGDYSYEII K S P G K T 0 0 0 1 0 0 1 2 0 1 0 1 0 0 1 4 1 0 2 0 0 0 14 0 1489.6573 P46821 P46821 1915 1928 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 4.4548E-08 129.84 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0104 0.96948 8.2995 4 Median 0.95773 0.94924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92699 0.99016 NaN 1 0 Median 1.1189 1.108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0659 0.91484 NaN 1 0 Median 27563000 13738000 13825000 2708500 1501700 1206800 0 0 0 15308000 8079300 7228400 8642600 3789300 4853300 0 0 0 903980 367840 536140 31316 2347 32933 163748;163749;163750;163751 164758;164759;164760;164761;164762;164763 164758 6 SPSDSSTASTPVAEQIER LDSHRRMAPTPIPTRSPSDSSTASTPVAEQ DSSTASTPVAEQIERALDEVTSSQPPPLPP R S P E R A 2 1 0 1 0 1 2 0 0 1 0 0 0 0 2 5 2 0 0 1 0 0 18 0 1860.8701 Q16643;D6R9Q9 Q16643 337 354 DBN1 Drebrin yes no 2;3 6.9259E-15 151.54 By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 1 0.7951 0.77268 10.732 7 Median 0.79907 0.76792 8.0203 4 1 Median 1.0898 0.94401 NaN 1 0 Median 0.65368 0.69399 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74492 0.78371 NaN 1 0 Median NaN NaN NaN 0 0 Median 53552000 28735000 24818000 34033000 18080000 15953000 4378300 2235600 2142700 10962000 6282200 4680000 0 0 0 4179200 2137000 2042200 0 0 0 31317 2991 32934 163752;163753;163754;163755;163756;163757;163758 164764;164765;164766;164767;164768;164769;164770;164771;164772;164773 164768 10 SPSELFAQHIVTIVHHVK FRSIFQHIQSAQSQRSPSELFAQHIVTIVH ELFAQHIVTIVHHVKEHHFGSSGMTLHERF R S P V K E 1 0 0 0 0 1 1 0 3 2 1 1 0 1 1 2 1 0 0 3 0 0 18 0 2041.1109 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 622 639 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3;4 0.00041715 35.64 By matching By matching By MS/MS By matching 1 1 2 1 0.952 0.96807 21.503 5 Median 0.81802 0.79885 NaN 1 0 Median 0.68993 0.61013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97026 1.0023 2.8371 2 0 Median 1.1613 0.96807 NaN 1 0 Median 14939000 7583800 7355200 4758300 2848000 1910300 598360 345830 252530 0 0 0 0 0 0 8827500 4047300 4780200 754880 342680 412200 31318 439 32935 163759;163760;163761;163762;163763 164774;164775;164776;164777 164774 4 SPSGSAFGSQENLR RGQLGTYTIASPPERSPSGSAFGSQENLRW RSPSGSAFGSQENLRWRKDMTHWRQNTEKL R S P L R W 1 1 1 0 0 1 1 2 0 0 1 0 0 1 1 4 0 0 0 0 0 0 14 0 1435.6692 Q96N67;A0A1B0GWE0 Q96N67 1430 1443 DOCK7 Dedicator of cytokinesis protein 7 yes no 2 0.00012139 81.625 By MS/MS By MS/MS By matching 3 1 1 0.76194 0.64536 28.234 5 Median 0.80375 0.79256 34.43 3 2 Median 0.76194 0.64536 NaN 1 0 Median 0.57218 0.63134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15977000 8835600 7141900 8476600 4494700 3982000 2845600 1544900 1300700 4655200 2796000 1859200 0 0 0 0 0 0 0 0 0 31319 3707 32936 163764;163765;163766;163767;163768 164778;164779;164780 164780 3 SPSISNMAALSR HSQSRSTSSPSLHSRSPSISNMAALSRAHS HSRSPSISNMAALSRAHSPALGVHSFSGVQ R S P S R A 2 1 1 0 0 0 0 0 0 1 1 0 1 0 1 4 0 0 0 0 0 0 12 0 1232.6183 Q9H1A4 Q9H1A4 341 352 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 2 1.1341E-06 117.52 By MS/MS By MS/MS 1 1 0.68575 0.67149 19.084 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70457 0.7685 NaN 1 1 Median 0.66744 0.58672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14834000 9103200 5730600 0 0 0 0 0 0 11677000 6825200 4852000 3156600 2278000 878590 0 0 0 0 0 0 31320 3933 32937 163769;163770 164781;164782 164781 2 SPSKPLPEVTDEYKNDVK AELMEISEDKTKIRRSPSKPLPEVTDEYKN KPLPEVTDEYKNDVKNRSVYIKGFPTDATL R S P V K N 0 0 1 2 0 0 2 0 0 0 1 3 0 0 3 2 1 0 1 2 0 0 18 2 2045.0317 P05455;E7ERC4;E9PGX9;E9PFL9 P05455 92 109 SSB Lupus La protein yes no 3;4 8.965E-07 80.859 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 0.64739 0.68943 9.0039 9 Median 0.68098 0.66238 7.1537 2 0 Median 0.73423 0.69506 8.3403 2 0 Median 0.59632 0.69945 2.0415 2 0 Median 0.68378 0.65727 12.225 2 0 Median 0.51625 0.56234 NaN 1 1 Median NaN NaN NaN 0 0 Median 115170000 69022000 46148000 28460000 16977000 11483000 13092000 6200200 6891900 25500000 15646000 9853800 42348000 26456000 15892000 5771700 3743300 2028400 0 0 0 31321 1867 32938 163771;163772;163773;163774;163775;163776;163777;163778;163779 164783;164784;164785;164786;164787;164788;164789;164790 164789 8 SPSLGTMR FNYLNHWNHFGREYRSPSLGTMRRLLK___ HFGREYRSPSLGTMRRLLK___________ R S P M R R 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 0 8 0 847.42219 Q9H479 Q9H479 298 305 FN3K Fructosamine-3-kinase yes yes 2 0.0079875 64.757 By MS/MS 1 1.5549 1.2977 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5549 1.2977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1816400 823290 993110 0 0 0 0 0 0 0 0 0 1816400 823290 993110 0 0 0 0 0 0 31322 3962 32939 163780 164791 164791 1 SPSLLQSGAK SALARKKARLSLVIRSPSLLQSGAKKKAQV SLVIRSPSLLQSGAKKKAQVRKAGKP____ R S P A K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 3 0 0 0 0 0 0 10 0 986.53966 Q9BQG0;I3L1L3;I3L2H8 Q9BQG0 1308 1317 MYBBP1A Myb-binding protein 1A yes no 2 0.00086754 99.802 By MS/MS 1 5.0591 5.3952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.0591 5.3952 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18638000 3014100 15623000 0 0 0 0 0 0 18638000 3014100 15623000 0 0 0 0 0 0 0 0 0 31323 3789 32940 163781 164792 164792 1 SPSNGVGSLASKPVDVASDNVK WQQPFSSCEKKSEAKSPSNGVGSLASKPVD SLASKPVDVASDNVKKKHTKKNE_______ K S P V K K 2 0 2 2 0 0 0 2 0 0 1 2 0 0 2 5 0 0 0 4 0 0 22 1 2127.0808 A0A0A0MRS4;Q9NVV0 A0A0A0MRS4 208 229 TMEM38B Trimeric intracellular cation channel type B yes no 3 5.2566E-13 82.146 By MS/MS By MS/MS 1 1 0.90084 0.91895 19.147 2 Median 0.73672 0.80259 NaN 1 0 Median 1.1015 1.0522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25125000 11699000 13426000 11640000 5803600 5836700 13485000 5895800 7589200 0 0 0 0 0 0 0 0 0 0 0 0 31324 170 32941 163782;163783 164793;164794;164795 164795 3 SPSSPQQQQQVLNILK SISPSALQDLLRTLKSPSSPQQQQQVLNIL PSSPQQQQQVLNILKSNPQLMAAFIKQRTA K S P L K S 0 0 1 0 0 5 0 0 0 1 2 1 0 0 2 3 0 0 0 1 0 0 16 0 1793.9636 Q92793 Q92793 2076 2091 CREBBP CREB-binding protein yes yes 2 5.2373E-08 133.89 By MS/MS By matching 1 1 0.68519 0.69051 0.13046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62537 0.68988 NaN 1 0 Median 0.75074 0.69115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13338000 8445900 4891600 0 0 0 0 0 0 13066000 8276000 4790300 271220 169950 101270 0 0 0 0 0 0 31325 3557 32942 163784;163785 164796;164797 164797 2 SPSTLLPK TTTAAAVASTGPSSRSPSTLLPKKPTAIKT STGPSSRSPSTLLPKKPTAIKTEGKPAEVK R S P P K K 0 0 0 0 0 0 0 0 0 0 2 1 0 0 2 2 1 0 0 0 0 0 8 0 841.49092 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 1970 1977 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.044461 54.157 By MS/MS 1 1.211 1.3114 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.211 1.3114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3251200 1520900 1730300 0 0 0 0 0 0 3251200 1520900 1730300 0 0 0 0 0 0 0 0 0 31326 895 32943 163786 164798 164798 1 SPSTTYLHTPTPSEDAAIPSK HCRRGLLSNHTGSPRSPSTTYLHTPTPSED LHTPTPSEDAAIPSKSRLKRLISENSVYEK R S P S K S 2 0 0 1 0 0 1 0 1 1 1 1 0 0 4 4 4 0 1 0 0 0 21 0 2199.0695 Q13111 Q13111 775 795 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 1.2537E-06 43.598 By MS/MS By MS/MS By MS/MS 1 2 2 0.49565 0.52883 20.901 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49565 0.52883 NaN 1 0 Median 0.66034 0.57326 8.5281 2 0 Median 0.37965 0.3931 12.569 2 0 Median NaN NaN NaN 0 0 Median 38359000 24629000 13731000 0 0 0 0 0 0 16266000 10068000 6197400 6718600 4110600 2608000 15375000 10450000 4925300 0 0 0 31327 2785 32944 163787;163788;163789;163790;163791 164799;164800;164801;164802;164803;164804;164805 164803 7 SPSWQRPNQGVPSTGR AAAAFKPVGSTGVIKSPSWQRPNQGVPSTG PSWQRPNQGVPSTGRISNSATYSGSVAPAN K S P G R I 0 2 1 0 0 2 0 2 0 0 0 0 0 0 3 3 1 1 0 1 0 0 16 1 1752.8656 Q96HC4;H0Y8Y3;A0A0A0MSP3 Q96HC4 360 375 PDLIM5 PDZ and LIM domain protein 5 yes no 3 0.0017597 32.815 By MS/MS By matching By matching By matching 1 2 1 1 0.71509 0.6582 41.329 5 Median 0.58508 0.62987 NaN 1 0 Median 0.81257 0.74294 17.126 2 0 Median 0.91401 1.02 NaN 1 0 Median 0.36642 0.34142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14949000 8156800 6791900 4620300 2808500 1811800 6294200 3391200 2903000 2598700 1145100 1453600 1435600 812030 623560 0 0 0 0 0 0 31328 3665 32945 163792;163793;163794;163795;163796 164806;164807 164806 2 SPSWYGIPR NDLYVEGLPENIPFRSPSWYGIPRLEKIIQ ENIPFRSPSWYGIPRLEKIIQVGNRIKFVI R S P P R L 0 1 0 0 0 0 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 9 0 1061.5294 P78347;A0A494C1K3;A0A494C0Q7 P78347 515 523 GTF2I General transcription factor II-I yes no 2 0.00093857 89.55 By MS/MS By matching By matching 1 2 1 0.77113 0.67186 21.301 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50781 0.55829 NaN 1 0 Median 0.77113 0.67186 17.674 2 0 Median NaN NaN NaN 0 0 Median 1.0693 0.87922 NaN 1 0 Median 17065000 11208000 5857000 0 0 0 0 0 0 15770000 10580000 5189700 832910 404440 428470 0 0 0 462460 223620 238840 31329 2642 32946 163797;163798;163799;163800 164808;164809 164808 2 SPTAPSVFSPTGNR TTTPLKGIPKQAPFRSPTAPSVFSPTGNRT RSPTAPSVFSPTGNRTPIPPSRTLLRKERG R S P N R T 1 1 1 0 0 0 0 1 0 0 0 0 0 1 3 3 2 0 0 1 0 0 14 0 1416.6997 H0Y3X6;A0A0C4DFX9;Q9H3P2;C9JEM7;H7C2C7;C9JHL4 H0Y3X6 229 242 NELFA Negative elongation factor A yes no 2 2.5663E-11 140.07 By MS/MS By MS/MS By MS/MS 1 1 1 0.67388 0.64057 20.969 3 Median 0.67388 0.64057 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.47471 0.48364 NaN 1 0 Median 0.87339 0.72883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24161000 12901000 11260000 11592000 5435200 6157000 0 0 0 10944000 6647700 4296200 1625200 818030 807210 0 0 0 0 0 0 31330 231 32947 163801;163802;163803 164810;164811;164812;164813;164814 164810 5 SPTDWALFTYEGNSNDIR GPALQEAYVRVVTEKSPTDWALFTYEGNSN DWALFTYEGNSNDIRVAGTGEGGLEEMVEE K S P I R V 1 1 2 2 0 0 1 1 0 1 1 0 0 1 1 2 2 1 1 0 0 0 18 0 2084.9439 Q9UJU6;B4DDD6;F8WBG8;F8WC20;F8WBB2;F8WFE1 Q9UJU6 24 41 DBNL Drebrin-like protein yes no 2 0.0032643 30.828 By MS/MS By matching By matching 1 1 1 0.991 0.98861 37.199 3 Median 0.991 0.98861 NaN 1 0 Median 0.75214 0.67097 NaN 1 0 Median 1.3377 1.4116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3556900 1795400 1761500 2233300 1048300 1185000 237650 126700 110940 1086000 620440 465530 0 0 0 0 0 0 0 0 0 31331 4298 32948 163804;163805;163806 164815 164815 1 SPTLYGISHDDLK VNWLGYAYLYIRMLRSPTLYGISHDDLKGD LRSPTLYGISHDDLKGDPLLDQRRLDLVHT R S P L K G 0 0 0 2 0 0 0 1 1 1 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1444.7198 O75643;A0A494C1A5 O75643 932 944 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 4.7841E-07 121.9 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 1 2 1.0939 0.99071 22.294 12 Median 0.88604 0.85049 NaN 1 0 Median 1.4737 1.311 38.258 4 2 Linear 0.84898 0.93417 4.2771 2 0 Median 1.0939 0.98438 4.9412 2 0 Median 0.76082 0.79739 NaN 1 1 Median 1.2541 1.086 5.6734 2 0 Median 106250000 49592000 56658000 5354700 2406900 2947900 24755000 11208000 13547000 56122000 25776000 30346000 14270000 6781900 7488400 5297200 3218400 2078800 450980 200730 250250 31332 1688 32949 163807;163808;163809;163810;163811;163812;163813;163814;163815;163816;163817;163818 164816;164817;164818;164819;164820;164821;164822;164823;164824;164825 164822 10 SPTLYGISHDDLKGDPLLDQR VNWLGYAYLYIRMLRSPTLYGISHDDLKGD ISHDDLKGDPLLDQRRLDLVHTAALMLDKN R S P Q R R 0 1 0 4 0 1 0 2 1 1 4 1 0 0 2 2 1 0 1 0 0 0 21 1 2339.1757 O75643;A0A494C1A5 O75643 932 952 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 1.0399E-11 63.184 By MS/MS By matching By MS/MS By matching By matching 1 1 3 1 1 0.72929 0.75233 18.769 7 Median 0.74493 0.74914 NaN 1 0 Median 0.77909 0.75233 NaN 1 0 Median 0.65607 0.78605 23.418 3 0 Plateau 0.89066 0.85984 NaN 1 0 Median 0.72929 0.82758 NaN 1 0 Median NaN NaN NaN 0 0 Median 43006000 24358000 18649000 9530400 5369200 4161200 632270 350210 282060 30288000 17180000 13108000 222900 128600 94298 2333200 1330000 1003200 0 0 0 31333 1688 32950 163819;163820;163821;163822;163823;163824;163825 164826;164827;164828;164829 164829 4 SPTPPLFSLPEAR ______________________________ ______________________________ M S P A R T 1 1 0 0 0 0 1 0 0 0 2 0 0 1 4 2 1 0 0 0 0 0 13 0 1410.7507 A0A087WWS1;Q96FV9;J3KT14;J3KRD7;J3QQZ3 A0A087WWS1 2 14 THOC1 THO complex subunit 1 yes no 2 0.0011902 72.652 By MS/MS 1 0.31228 0.31415 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31228 0.31415 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40103000 30242000 9861100 0 0 0 0 0 0 40103000 30242000 9861100 0 0 0 0 0 0 0 0 0 31334 62 32951 163826 164830 164830 1 SPTPPPTLHLVPEPAAPPPPPPR SDFQLQFPPSQGPHKSPTPPPTLHLVPEPA HLVPEPAAPPPPPPRTFQMVTTPFPALPQP K S P P R T 2 1 0 0 0 0 1 0 1 0 2 0 0 0 12 1 2 0 0 1 0 0 23 0 2361.2845 A0A087WWH3;Q9NZM4 A0A087WWH3 867 889 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein yes no 3 0.063207 6.5598 By matching By MS/MS 1 3 0.85468 0.74154 25.118 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93725 0.94285 NaN 1 0 Median 0.77938 0.63161 22.935 3 0 Median 10265000 5548900 4716100 0 0 0 0 0 0 0 0 0 0 0 0 3383300 1799700 1583600 6881800 3749200 3132500 31335 59 32952 163827;163828;163829;163830 164831 164831 1 SPTTTASVSATAAPR RVVNITSPGHDASSRSPTTTASVSATAAPR SPTTTASVSATAAPRTVRVAMQVPVVMTSL R S P P R T 4 1 0 0 0 0 0 0 0 0 0 0 0 0 2 3 4 0 0 1 0 0 15 0 1416.7209 Q15723 Q15723 372 386 ELF2 ETS-related transcription factor Elf-2 yes yes 2 8.321E-05 81.625 By MS/MS By MS/MS 1 1 0.61798 0.58319 7.3071 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58158 0.61411 NaN 1 0 Median 0.65665 0.55382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2105000 1136800 968150 0 0 0 0 0 0 1596800 805020 791770 508180 331810 176370 0 0 0 0 0 0 31336 2965 32953 163831;163832 164832;164833 164832 2 SPTWFGIPR EFLYVEGLPEGIPFRSPTWFGIPRLERIVR EGIPFRSPTWFGIPRLERIVRGSNKIKFVV R S P P R L 0 1 0 0 0 0 0 1 0 1 0 0 0 1 2 1 1 1 0 0 0 0 9 0 1059.5502 P78347;A0A494C1K3 P78347 620 628 GTF2I General transcription factor II-I yes no 2 0.0008961 91.9 By matching By MS/MS By matching By MS/MS By matching 1 3 2 1 1 0.79155 0.76789 31.468 8 Median NaN NaN NaN 0 0 Median 0.67625 0.59683 NaN 1 0 Median 0.55492 0.59918 53.674 3 0 Median 0.89547 0.77449 4.7809 2 0 Median 0.73849 0.78751 NaN 1 0 Median 1.0627 0.94834 NaN 1 0 Median 20491000 12508000 7983500 0 0 0 915380 532940 382450 17766000 10933000 6833400 606800 325120 281680 1080300 675520 404800 122290 41164 81124 31337 2642 32954 163833;163834;163835;163836;163837;163838;163839;163840 164834;164835;164836;164837;164838;164839;164840;164841;164842;164843 164836 10 SPVDIVTGGISPVR KPMHSLIPLGKSAAKSPVDIVTGGISPVRD KSPVDIVTGGISPVRDLDRLLQDMDINRLR K S P V R D 0 1 0 1 0 0 0 2 0 2 0 0 0 0 2 2 1 0 0 3 0 0 14 0 1395.7722 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A494C0R9;H0Y9N9 E9PEM5 1488 1501 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 1.1328E-05 152.07 By MS/MS By matching 2 1 0.87287 0.73763 16.086 3 Median 0.87099 0.84424 19.901 2 0 Median 0.87287 0.73763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12644000 7149300 5494900 10474000 5839100 4634500 2170600 1310200 860410 0 0 0 0 0 0 0 0 0 0 0 0 31338 470 32955 163841;163842;163843 164844;164845 164845 2 SPVDIVTGGISPVRDLDR KPMHSLIPLGKSAAKSPVDIVTGGISPVRD DIVTGGISPVRDLDRLLQDMDINRLRAVVF K S P D R L 0 2 0 3 0 0 0 2 0 2 1 0 0 0 2 2 1 0 0 3 0 0 18 1 1895.0112 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A494C0R9;H0Y9N9 E9PEM5 1488 1505 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 0.00062289 34.498 By MS/MS 1 0.71902 0.78136 NaN 1 Median 0.71902 0.78136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5352400 3008100 2344200 5352400 3008100 2344200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31339 470 32956 163844 164846 164846 1 SPVDSGTILREPTTK TAGGSRSQKVKVAQRSPVDSGTILREPTTK SPVDSGTILREPTTKSVPVNNLPERSPTDS R S P T K S 0 1 0 1 0 0 1 1 0 1 1 1 0 0 2 2 3 0 0 1 0 0 15 1 1599.8468 P49454 P49454 3054 3068 CENPF Centromere protein F yes yes 3 2.345E-08 100.4 By MS/MS 2 0.86871 1.0072 0.0030244 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86871 1.0072 0.0030244 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21763000 10674000 11089000 0 0 0 0 0 0 21763000 10674000 11089000 0 0 0 0 0 0 0 0 0 31340 2383 32957 163845;163846 164847;164848 164847 2 SPVESTTEPPAVR ETNVFFYPRLLPLTKSPVESTTEPPAVRAS TKSPVESTTEPPAVRASEERLSNGDIYLLE K S P V R A 1 1 0 0 0 0 2 0 0 0 0 0 0 0 3 2 2 0 0 2 0 0 13 0 1368.6885 P53992;G5EA31 P53992 957 969 SEC24C Protein transport protein Sec24C yes no 2 2.509E-11 137.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 0.74435 0.62146 23.873 5 Median 0.60494 0.5849 NaN 1 0 Median 0.81209 0.6933 15.471 2 2 Median 0.85342 0.93532 NaN 1 1 Median 0.60046 0.51236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23538000 13826000 9711800 5790600 3641400 2149200 14267000 8153500 6113600 2473500 1391600 1081800 1006400 639220 367130 0 0 0 0 0 0 31341 1134 32958 163847;163848;163849;163850;163851;163852 164849;164850;164851;164852;164853;164854;164855 164852 7 SPVFNHSLYR YLCQPLLDAVLANIRSPVFNHSLYRTFVPA LANIRSPVFNHSLYRTFVPAMTAIHGPPIT R S P Y R T 0 1 1 0 0 0 0 0 1 0 1 0 0 1 1 2 0 0 1 1 0 0 10 0 1218.6146 Q96RN5;G3V1P5 Q96RN5 631 640 MED15 Mediator of RNA polymerase II transcription subunit 15 yes no 3 0.00016037 73.067 By MS/MS By matching 1 1 0.68579 0.65532 3.3184 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62736 0.67087 NaN 1 0 Median 0.74967 0.64012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4986500 2728100 2258400 0 0 0 0 0 0 4382900 2427200 1955700 603620 300890 302720 0 0 0 0 0 0 31342 3727 32959 163853;163854 164856 164856 1 SPVFSAMFEHEMEESKK AGQEFQAHKAILAARSPVFSAMFEHEMEES VFSAMFEHEMEESKKNRVEINDVEPEVFKE R S P K K N 1 0 0 0 0 0 4 0 1 0 0 2 2 2 1 3 0 0 0 1 0 0 17 1 2011.9019 O43791;D6RDG8;D6RDV6 O43791 222 238 SPOP Speckle-type POZ protein yes no 3 0.046828 10.141 By MS/MS 1 0.86999 0.94804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86999 0.94804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3710000 2032200 1677800 0 0 0 0 0 0 3710000 2032200 1677800 0 0 0 0 0 0 0 0 0 31343 1590 32960 163855 164857 164857 1 SPVFSSSDGSLWETVAR PAAHSFVDLLLCVARSPVFSSSDGSLWETV VFSSSDGSLWETVARALSCLGPTHMGPLAL R S P A R A 1 1 0 1 0 0 1 1 0 0 1 0 0 1 1 5 1 1 0 2 0 0 17 0 1823.869 Q6PJG6 Q6PJG6 269 285 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 3.1676E-05 52.344 By MS/MS By matching 1 1 1.069 1.0896 0.42403 2 Median 1.1133 1.0929 NaN 1 0 Median 1.0264 1.0864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2782600 1282000 1500600 2502900 1178400 1324500 279710 103620 176090 0 0 0 0 0 0 0 0 0 0 0 0 31344 3174 32961 163856;163857 164858;164859 164859 2 SPVPSAFSDQSR APSQSLLPPAQDQPRSPVPSAFSDQSRCLI QPRSPVPSAFSDQSRCLIAQTTPVAGSQSL R S P S R C 1 1 0 1 0 1 0 0 0 0 0 0 0 1 2 4 0 0 0 1 0 0 12 0 1276.6048 Q9UQ35;I3L3Q8 Q9UQ35 2449 2460 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 0.0044584 43.512 By matching By MS/MS By MS/MS 1 2 2 0.87588 0.89429 27.175 5 Median 1.102 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8636 0.88668 1.2082 2 0 Median 0.80441 0.68159 39.658 2 0 Median 31619000 15300000 16319000 20578000 10225000 10352000 0 0 0 0 0 0 0 0 0 6641400 2877200 3764200 4400100 2197600 2202400 31345 4359 32962 163858;163859;163860;163861;163862 164860;164861 164861 2 SPVTFLSDLR PPQFKKDLDSYLKTRSPVTFLSDLRSNLQV YLKTRSPVTFLSDLRSNLQVSNEPGNRYNL R S P L R S 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 10 0 1133.6081 A5YKK6 A5YKK6 2188 2197 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.0057065 50.04 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1.1218 1.0829 19.618 6 Median 0.84707 0.81389 NaN 1 0 Median 1.1525 0.99375 15.83 2 0 Median 0.95052 1.0551 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1812 1.2291 NaN 1 0 Median 1.5821 1.374 NaN 1 0 Median 9359300 4647200 4712100 4477400 2351600 2125800 1630800 733730 897030 2030100 948950 1081100 0 0 0 1053200 552280 500900 167830 60601 107230 31346 503 32963 163863;163864;163865;163866;163867;163868 164862;164863;164864 164864 3 SPVTNIAR DAFRVNVIHARQQVRSPVTNIARTSFFHVK HARQQVRSPVTNIARTSFFHVKRSNIWLAA R S P A R T 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 8 0 856.47667 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8;C9JJD3;C9JPV8 A0A087WY71 45 52 AP2M1 AP-2 complex subunit mu yes no 2 0.011256 57.281 By MS/MS By MS/MS 1 1 0.98171 0.98795 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98171 0.98795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3107900 1578600 1529300 0 0 0 0 0 0 3107900 1578600 1529300 0 0 0 0 0 0 0 0 0 31347 78 32964 163869;163870 164865;164866;164867 164865 3 SPVVTIMGHVDHGK AVRRPQADPALLTPRSPVVTIMGHVDHGKT RSPVVTIMGHVDHGKTTLLDKFRKTQVAAV R S P G K T 0 0 0 1 0 0 0 2 2 1 0 1 1 0 1 1 1 0 0 3 0 0 14 0 1475.7555 P46199 P46199 180 193 MTIF2 Translation initiation factor IF-2, mitochondrial yes yes 3 0.033302 17.489 By MS/MS By matching By MS/MS By matching 1 1 1 2 1.5293 1.3297 42.045 5 Median 0.61469 0.58591 NaN 1 0 Median 1.8809 1.6952 NaN 1 0 Median 0.92722 0.98518 NaN 1 0 Median 1.6125 1.394 6.6782 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10374000 5669700 4704100 4044300 2816100 1228200 606660 173270 433390 4260400 2127500 2132900 1462400 552840 909580 0 0 0 0 0 0 31348 2342 32965 163871;163872;163873;163874;163875 164868;164869;164870 164870 3 SPVYLTVLK KDHVEGKQILSADLRSPVYLTVLKHGDGTT LSADLRSPVYLTVLKHGDGTTLDIMLKLHK R S P L K H 0 0 0 0 0 0 0 0 0 0 2 1 0 0 1 1 1 0 1 2 0 0 9 0 1018.6063 E9PLK3;P55786 E9PLK3 741 749 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 0.0066958 53.775 By MS/MS By matching By matching By matching 4 1 1 1 1.2507 1.2032 16.011 7 Median 1.1713 1.1636 19.375 4 0 Median 1.4046 1.2032 NaN 1 0 Median 0.91293 1.0007 NaN 1 0 Median 1.4718 1.3055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31662000 16229000 15434000 23742000 12209000 11533000 188730 100330 88407 7575100 3853700 3721400 156220 65333 90885 0 0 0 0 0 0 31349 960 32966 163876;163877;163878;163879;163880;163881;163882 164871;164872 164871 2 SPWSNKYDPPLEDGAMPSAR DYLLCDYNRDGDSYRSPWSNKYDPPLEDGA KYDPPLEDGAMPSARLRKLEVEANNAFDQY R S P A R L 2 1 1 2 0 0 1 1 0 0 1 1 1 0 4 3 0 1 1 0 0 0 20 1 2217.0161 B1AK87;B1AK88;P47756;B1AK85 B1AK87 61 80 CAPZB F-actin-capping protein subunit beta yes no 3 1.7976E-10 86.748 By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 0.72904 0.67075 27.034 8 Median 0.60277 0.60469 NaN 1 0 Median 0.70688 0.63404 34.125 3 0 Median 0.73775 0.79995 45.766 2 0 Median 0.78176 0.73776 5.5068 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56495000 31559000 24935000 10077000 5746400 4330300 10447000 5291100 5155500 29706000 17217000 12488000 6265700 3304600 2961100 0 0 0 0 0 0 31350 566 32967;32968 163883;163884;163885;163886;163887;163888;163889;163890 164873;164874;164875;164876;164877;164878 164874 222 6 SPYLYPLYGLGELPQGFAR NRIKLYSESLARYGKSPYLYPLYGLGELPQ YPLYGLGELPQGFARLSAIYGGTYMLNKPI K S P A R L 1 1 0 0 0 1 1 3 0 0 4 0 0 1 3 1 0 0 3 0 0 0 19 0 2140.0993 P31150;P50395;Q5SX87;Q5SX91 P50395 222 240 GDI1;GDI2 Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta no no 2;3 9.3248E-18 139.48 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 3 0.72818 0.66201 34.638 12 Median 0.62222 0.59926 4.4859 2 0 Median 0.7569 0.63716 5.2523 2 0 Median 0.67912 0.66275 7.08 3 0 Median 0.78661 0.68851 3.9565 2 0 Median 0.95577 0.96591 74.37 3 0 Median NaN NaN NaN 0 0 Median 83257000 48455000 34802000 22639000 13335000 9303800 19068000 11041000 8026600 38645000 22536000 16109000 976570 556280 420290 1929100 986440 942690 0 0 0 31351 2411;2201 32969 163891;163892;163893;163894;163895;163896;163897;163898;163899;163900;163901;163902 164879;164880;164881;164882;164883;164884;164885;164886;164887;164888;164889 164882 11 SPYNYLQVAYFK AHSLSEEMELEFRKRSPYNYLQVAYFKINK RKRSPYNYLQVAYFKINKLEKAVAAAHTFF R S P F K I 1 0 1 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 3 1 0 0 12 0 1491.7398 Q32P28;E2QRI1 Q32P28 144 155 LEPRE1;P3H1 Prolyl 3-hydroxylase 1 yes no 2 0.022124 31.871 By MS/MS By matching By matching 1 1 1 1.0776 1.1216 2.4955 3 Median 1.1832 1.1618 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.027 1.1216 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0776 1.1071 NaN 1 0 Median NaN NaN NaN 0 0 Median 6533800 3209600 3324200 2251600 1155000 1096600 0 0 0 2886700 1426900 1459800 0 0 0 1395400 627620 767830 0 0 0 31352 3007 32970 163903;163904;163905 164890 164890 1 SPYQEFTDHLVK SYLTPDLWKETVFTKSPYQEFTDHLVKTHT FTKSPYQEFTDHLVKTHTRVSVQRTQAPAV K S P V K T 0 0 0 1 0 1 1 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 12 0 1462.7092 P15880;H0YEN5;E9PQD7 P15880 264 275 RPS2 40S ribosomal protein S2 yes no 2;3 1.7487E-05 125.72 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 7 4 3 2 5 2 1.0855 1.0096 18.63 23 Median 0.96074 0.86779 23.126 7 0 Median 1.1074 0.93811 8.178 4 0 Median 1.0855 1.1371 7.9389 3 0 Median 1.201 1.0208 1.559 2 0 Median 1.122 1.1456 23.639 5 1 Median 1.0816 0.88427 12.282 2 0 Median 550570000 269330000 281230000 360370000 177130000 183230000 80364000 38762000 41602000 37886000 18391000 19495000 2409500 1109200 1300300 62064000 30472000 31592000 7477700 3467000 4010700 31353 2020 32971 163906;163907;163908;163909;163910;163911;163912;163913;163914;163915;163916;163917;163918;163919;163920;163921;163922;163923;163924;163925;163926;163927;163928 164891;164892;164893;164894;164895;164896;164897;164898;164899;164900;164901;164902;164903;164904;164905;164906;164907;164908;164909;164910 164894 20 SPYTLDSLYWSVKPASSSFGSEAK NSLVQEGSEASPIGKSPYTLDSLYWSVKPA WSVKPASSSFGSEAKAQQQEEQGSVNDVKE K S P A K A 2 0 0 1 0 0 1 1 0 0 2 2 0 1 2 7 1 1 2 1 0 0 24 1 2606.254 Q9Y4W2 Q9Y4W2 528 551 LAS1L Ribosomal biogenesis protein LAS1L yes yes 3 9.4724E-12 51.234 By MS/MS 3 0.79761 0.89345 32.713 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79761 0.89345 32.713 3 0 Median NaN NaN NaN 0 0 Median 9144400 4930000 4214300 0 0 0 0 0 0 0 0 0 0 0 0 9144400 4930000 4214300 0 0 0 31354 4448 32972 163929;163930;163931 164911;164912;164913 164912 3 SPYTVTVGQACNPSACR VHTVHVTFAGVPIPRSPYTVTVGQACNPSA YTVTVGQACNPSACRAVGRGLQPKGVRVKE R S P C R A 2 1 1 0 2 1 0 1 0 0 0 0 0 0 2 2 2 0 1 2 0 0 17 0 1866.8353 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 468 484 FLNA Filamin-A no no 2 2.3446E-41 215.85 By MS/MS 2 0.66788 0.55301 13.384 2 Median NaN NaN NaN 0 0 Median 0.66788 0.55301 13.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36616000 21611000 15005000 0 0 0 36616000 21611000 15005000 0 0 0 0 0 0 0 0 0 0 0 0 31355 2088;3120 32973 163932;163933 164914;164915 164915 2 SQAASILTK GDVFDPHGTLSGGARSQAASILTKFQELKD LSGGARSQAASILTKFQELKDVQDELRIKE R S Q T K F 2 0 0 0 0 1 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 9 0 917.5182 O95347 O95347 669 677 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0032652 66.299 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1.0231 0.96685 12.723 6 Median 1.0385 1.0453 NaN 1 0 Median 0.99522 0.84252 NaN 1 0 Median 1.0079 1.0824 NaN 1 0 Median 0.96819 0.83278 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.171 0.98905 14.24 2 0 Median 24878000 12769000 12109000 1524700 722050 802690 10409000 5567500 4841900 7285900 3773300 3512600 3779100 1799400 1979700 0 0 0 1879000 907030 971950 31356 1766 32974 163934;163935;163936;163937;163938;163939 164916;164917;164918;164919;164920;164921 164919 6 SQAEEEIDEIRK EKNLSERKKKSAQERSQAEEEIDEIRKSYQ QERSQAEEEIDEIRKSYQEELDKLRQLLKK R S Q R K S 1 1 0 1 0 1 4 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 12 1 1445.6998 Q5T1M5 Q5T1M5 755 766 FKBP15 FK506-binding protein 15 yes yes 2;3 0.0037675 45.433 By matching By MS/MS 1 2 1.1207 1.1661 25.209 3 Plateau 1.1822 1.191 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73133 0.83135 20.233 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12745000 6277100 6468300 7022200 2678200 4344000 0 0 0 5723200 3598900 2124300 0 0 0 0 0 0 0 0 0 31357 3079 32975 163940;163941;163942 164922;164923 164922 2 SQAEPLSGNKEPLADTSSNQQK GPKPAFGQQHQQQPKSQAEPLSGNKEPLAD GNKEPLADTSSNQQKNFKMQSAAFSIAADV K S Q Q K N 2 0 2 1 0 3 2 1 0 0 2 2 0 0 2 4 1 0 0 0 0 0 22 1 2328.1193 P49750;H0YIQ2 P49750 854 875 YLPM1 YLP motif-containing protein 1 yes no 3 1.2473E-12 76.027 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.88085 0.82795 11.966 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62822 0.72812 NaN 1 0 Median 0.90446 0.85583 4.684 2 0 Median 0.61849 0.6692 NaN 1 0 Median 0.96852 0.86428 NaN 1 0 Median 42057000 24203000 17854000 0 0 0 0 0 0 16358000 9963300 6394900 5003400 2427500 2575900 14704000 8797300 5906300 5991900 3015100 2976700 31358 2395 32976 163943;163944;163945;163946;163947 164924;164925;164926;164927;164928;164929;164930;164931 164931 8 SQAFIEMETR EPYGKIKNYILMRMKSQAFIEMETREDAMA LMRMKSQAFIEMETREDAMAMVDHCLKKAL K S Q T R E 1 1 0 0 0 1 2 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1210.5652 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87 P43243 533 542 MATR3 Matrin-3 yes no 2 0.00037209 95.775 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 4 5 6 1.1219 1.0671 34.014 22 Median NaN NaN NaN 0 0 Median 1.3141 1.0999 64.025 3 1 Median 1.0978 1.2048 10.668 4 1 Median 1.5192 1.2765 32.412 4 1 Median 1.0567 1.0564 12.491 5 3 Median 1.1483 0.95801 39.597 6 0 Median 398730000 185550000 213180000 0 0 0 17778000 8897300 8880800 112490000 51387000 61103000 29048000 11866000 17182000 202070000 96743000 105320000 37346000 16653000 20693000 31359 297 32977;32978 163948;163949;163950;163951;163952;163953;163954;163955;163956;163957;163958;163959;163960;163961;163962;163963;163964;163965;163966;163967;163968;163969;163970 164932;164933;164934;164935;164936;164937;164938;164939;164940;164941;164942;164943;164944;164945;164946;164947;164948;164949;164950;164951;164952;164953;164954;164955;164956;164957 164932 145 26 SQALLFIK HVLLDLSSHEKDKVRSQALLFIKRMYEKEQ HEKDKVRSQALLFIKRMYEKEQLREYVEKF R S Q I K R 1 0 0 0 0 1 0 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 8 0 918.55385 Q92797;A0A087WUE9 Q92797 730 737 SYMPK Symplekin yes no 2 0.023122 44.395 By MS/MS 1 0.9937 1.0733 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9937 1.0733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5800800 2810300 2990400 0 0 0 0 0 0 5800800 2810300 2990400 0 0 0 0 0 0 0 0 0 31360 3558 32979 163971 164958;164959 164959 2 SQAPGISLPGVLVGNK EESFNNCSKWLEKARSQAPGISLPGVLVGN QAPGISLPGVLVGNKTDLAGRRAVDSAEAR R S Q N K T 1 0 1 0 0 1 0 3 0 1 2 1 0 0 2 2 0 0 0 2 0 0 16 0 1535.8671 F5GZ09;Q9BW83;H0Y6C7 F5GZ09 148 163 IFT27 Intraflagellar transport protein 27 homolog yes no 2 0.00013928 61.344 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.79946 0.70496 16.271 6 Median 0.75009 0.7068 18.205 3 0 Median 1.0956 0.94978 NaN 1 0 Median 0.73308 0.70313 NaN 1 0 Median 0.85207 0.68539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27463000 15400000 12064000 23235000 13156000 10079000 1525300 718780 806550 2579800 1460400 1119400 123170 64328 58838 0 0 0 0 0 0 31361 1013 32980 163972;163973;163974;163975;163976;163977 164960;164961;164962;164963;164964;164965 164962 6 SQAPGQPGASQWGSR GKKVEVKRAEPRDSKSQAPGQPGASQWGSR SQAPGQPGASQWGSRVVPNAANGWAGQPPP K S Q S R V 2 1 0 0 0 3 0 3 0 0 0 0 0 0 2 3 0 1 0 0 0 0 15 0 1512.707 K7EQ55;K7EK33;Q96EP5;K7EQ02 K7EQ55 195 209 DAZAP1 DAZ-associated protein 1 yes no 2;3 7.9584E-20 191.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 2 0.94043 0.81742 19.279 10 Median 0.8385 0.83561 NaN 1 0 Median 0.95902 0.82305 NaN 1 0 Median 0.75463 0.74796 23.237 2 1 Median 0.96104 0.81182 26.122 3 0 Median 0.69428 0.69745 NaN 1 0 Median 1.0896 0.91359 17.836 2 0 Median 78605000 42276000 36329000 2060000 1166300 893620 2570300 1427900 1142400 33878000 19184000 14694000 23765000 12095000 11670000 5979600 3244300 2735300 10352000 5158200 5193800 31362 1367 32981 163978;163979;163980;163981;163982;163983;163984;163985;163986;163987 164966;164967;164968;164969;164970;164971;164972;164973;164974;164975;164976;164977;164978;164979;164980;164981;164982;164983 164978 18 SQAPLESSLDSLGDVFLDSGR VESLESLYFTPIPARSQAPLESSLDSLGDV SSLDSLGDVFLDSGRKTRSARRRTTQIINI R S Q G R K 1 1 0 3 0 1 1 2 0 0 4 0 0 1 1 5 0 0 0 1 0 0 21 0 2192.0597 A0A087WY61;Q14980 Q14980 1782 1802 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 6.9032E-06 40.025 By matching By MS/MS By matching 1 4 1 0.84905 0.83616 10.888 6 Median NaN NaN NaN 0 0 Median 0.95643 0.82976 NaN 1 0 Median 0.76995 0.83616 6.5238 4 0 Median NaN NaN NaN 0 0 Median 1.0733 1.0802 NaN 1 0 Median NaN NaN NaN 0 0 Median 3718100 2018800 1699300 0 0 0 654180 334050 320130 2769800 1537400 1232400 0 0 0 294080 147300 146780 0 0 0 31363 2905;77 32982 163988;163989;163990;163991;163992;163993 164984;164985;164986 164985 3 SQAPLESSLDSLGDVFLDSGRK VESLESLYFTPIPARSQAPLESSLDSLGDV SLDSLGDVFLDSGRKTRSARRRTTQIINIT R S Q R K T 1 1 0 3 0 1 1 2 0 0 4 1 0 1 1 5 0 0 0 1 0 0 22 1 2320.1547 A0A087WY61;Q14980 Q14980 1782 1803 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 3.3141E-18 101.22 By matching By MS/MS By MS/MS By matching 1 2 1 1 1.0306 0.97364 26.516 5 Median 1.3293 1.3616 NaN 1 0 Median 1.0008 0.94748 3.852 2 0 Median 0.80713 0.96757 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5187 1.6859 NaN 1 0 Median NaN NaN NaN 0 0 Median 18096000 8886300 9210000 589820 208630 381190 5877200 2829600 3047600 10166000 5398000 4767700 0 0 0 1463600 450060 1013500 0 0 0 31364 2905;77 32983 163994;163995;163996;163997;163998 164987;164988;164989;164990;164991 164989 5 SQASIIGVNLATK KVAIRPSSKKTYSLRSQASIIGVNLATKKK LRSQASIIGVNLATKKKEGTLQKFGDFLQH R S Q T K K 2 0 1 0 0 1 0 1 0 2 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1300.7351 Q96Q89 Q96Q89 1712 1724 KIF20B Kinesin-like protein KIF20B yes yes 2 0.0035077 43.991 By MS/MS By matching 1 1 2.3029 2.3007 23.892 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7616 1.943 NaN 1 0 Median 3.0105 2.7241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14080000 3610100 10470000 0 0 0 0 0 0 13541000 3472100 10069000 539380 137970 401410 0 0 0 0 0 0 31365 3717 32984 163999;164000 164992 164992 1 SQASTTVDINTQVEK SVEADKSSPGIHLERSQASTTVDINTQVEK SQASTTVDINTQVEKEVPPGSAIIHIKKHQ R S Q E K E 1 0 1 1 0 2 1 0 0 1 0 1 0 0 0 2 3 0 0 2 0 0 15 0 1619.8002 Q14676 Q14676 513 527 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 2.5243E-26 193.62 By matching By MS/MS By MS/MS 1 4 4 1.2168 1.1458 20.736 9 Median 1.0724 1.0921 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1512 1.2445 26.759 4 0 Median 1.4785 1.2621 16.602 4 1 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83040000 39070000 43971000 624540 256640 367900 0 0 0 55904000 26990000 28914000 26512000 11823000 14689000 0 0 0 0 0 0 31366 2887 32985 164001;164002;164003;164004;164005;164006;164007;164008;164009 164993;164994;164995;164996;164997;164998;164999;165000;165001;165002;165003;165004;165005;165006;165007 164995 15 SQAVEKPPSEKPR SATRTRRSASQAGSKSQAVEKPPSEKPRLR SKSQAVEKPPSEKPRLRRSSPRAQEEGPGE K S Q P R L 1 1 0 0 0 1 2 0 0 0 0 2 0 0 3 2 0 0 0 1 0 0 13 2 1451.7732 A0A0M3HER2;Q7Z7K6 Q7Z7K6 53 65 CENPV Centromere protein V no no 3 0.055051 15.162 By matching By MS/MS By matching 1 2 1 0.52749 0.54491 26.372 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91732 0.89066 NaN 1 0 Median 0.43569 0.5111 0.79515 2 0 Median 0.63814 0.57771 NaN 1 0 Median 3423600 2194000 1229600 0 0 0 0 0 0 0 0 0 177600 92328 85276 3076700 2018100 1058600 169350 83579 85768 31367 3261;296 32986 164010;164011;164012;164013 165008 165008 1 SQAWQPLVEGSENK SSIENSDSPVRSILKSQAWQPLVEGSENKG KSQAWQPLVEGSENKGMLREYGETESKRAL K S Q N K G 1 0 1 0 0 2 2 1 0 0 1 1 0 0 1 2 0 1 0 1 0 0 14 0 1571.758 O95425 O95425 928 941 SVIL Supervillin yes yes 2 0.0485 36.303 By MS/MS 1 0.34257 0.38182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34257 0.38182 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3310900 2278700 1032100 0 0 0 0 0 0 3310900 2278700 1032100 0 0 0 0 0 0 0 0 0 31368 1772 32987 164014 165009 165009 1 SQDAEVGDGTTSVTLLAAEFLK DVVHPAAKTLVDIAKSQDAEVGDGTTSVTL DGTTSVTLLAAEFLKQVKPYVEEGLHPQII K S Q L K Q 3 0 0 2 0 1 2 2 0 0 3 1 0 1 0 2 3 0 0 2 0 0 22 0 2251.122 Q99832;F8WAM2 Q99832 85 106 CCT7 T-complex protein 1 subunit eta yes no 2;3 0.00054462 31.389 By MS/MS By matching By MS/MS 2 3 1 1.149 1.0459 10.648 6 Median 1.149 1.0923 3.9291 2 0 Median 1.1263 0.96934 5.7063 3 0 Median 1.2348 1.2389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24168000 10732000 13436000 14599000 6432800 8165800 4476700 2007700 2468900 5093100 2291900 2801200 0 0 0 0 0 0 0 0 0 31369 3771 32988 164015;164016;164017;164018;164019;164020 165010;165011;165012;165013 165010 4 SQDDAMVDYFFQR THSSPVPGSIGVAGRSQDDAMVDYFFQRQH GRSQDDAMVDYFFQRQHGEQLGGGGSGGGG R S Q Q R Q 1 1 0 3 0 2 0 0 0 0 0 0 1 2 0 1 0 0 1 1 0 0 13 0 1620.6879 Q5T1Z4;Q5T1Z8;E9PR38;H0YEH2;Q14671;E9PM68;E9PL65;E9PMX1 Q5T1Z4 75 87 PUM1 Pumilio homolog 1 yes no 2 0.011536 35.414 By MS/MS 2 1.0039 1.0038 1.7632 2 Median 1.0039 1.0038 1.7632 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1721300 796220 925050 1721300 796220 925050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31370 3081 32989 164021;164022 165014;165015 165014 2 SQDDRDKFLGR EVTVECKIDGSANLKSQDDRDKFLGRVMFK ANLKSQDDRDKFLGRVMFKITARA______ K S Q G R V 0 2 0 3 0 1 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 2 1335.6531 P54709;C9J6S2 P54709 260 270 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 3 0.0035173 38.402 By MS/MS By matching By matching 1 1 1 1.1659 1.3144 57.591 3 Median 1.1659 1.3144 NaN 1 0 Median 1.2165 1.4272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62201 0.5064 NaN 1 0 Median 2773500 1284400 1489100 1856200 877540 978710 866310 376590 489720 0 0 0 0 0 0 0 0 0 50948 30249 20698 31371 2485 32990 164023;164024;164025 165016;165017 165017 2 SQDFGNLFSFPSYSQK GKSKATPEKSLHDKKSQDFGNLFSFPSYSQ QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS K S Q Q K S 0 0 1 1 0 2 0 1 0 0 1 1 0 3 1 4 0 0 1 0 0 0 16 0 1850.8475 Q02880 Q02880 1441 1456 TOP2B DNA topoisomerase 2-beta yes yes 2 0.00013921 62.924 By MS/MS By MS/MS 1 2 0.73607 0.81279 17.978 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73607 0.81279 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70594 0.7211 23.472 2 0 Median NaN NaN NaN 0 0 Median 13759000 7559500 6199700 0 0 0 0 0 0 10589000 5857100 4731700 0 0 0 3170400 1702400 1468000 0 0 0 31372 2704 32991 164026;164027;164028 165018;165019;165020;165021 165019 4 SQDHFHVFVGDLSPEITTEDIK QKKDTSSSTVVSTQRSQDHFHVFVGDLSPE FVGDLSPEITTEDIKAAFAPFGRISDARVV R S Q I K A 0 0 0 3 0 1 2 1 2 2 1 1 0 2 1 2 2 0 0 2 0 0 22 0 2513.2074 F8W8I6;P31483;E5RGV5 F8W8I6 102 123 TIA1 Nucleolysin TIA-1 isoform p40 yes no 3 0.027989 13.057 By MS/MS 1 0.62183 0.60376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62183 0.60376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9345500 6471300 2874200 0 0 0 0 0 0 9345500 6471300 2874200 0 0 0 0 0 0 0 0 0 31373 1086 32992 164029 165022 165022 1 SQDIYLR IRHNKDRKVRRKEPKSQDIYLRLLVKLYRF KVRRKEPKSQDIYLRLLVKLYRFLARRTNS K S Q L R L 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 7 0 893.46068 J3QQ67;Q07020;G3V203;F8VYV2;A0A075B7A0;F8VXR6 J3QQ67 22 28 RPL18 60S ribosomal protein L18 yes no 2 0.0054115 100.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.1373 1.1052 10.82 8 Median 1.1621 1.1379 11.785 2 1 Median 1.102 0.98373 9.0314 2 1 Median 1.1218 1.0779 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1531 1.1588 NaN 1 0 Median 1.5337 1.2163 10.029 2 0 Median 89933000 40272000 49661000 39511000 18756000 20755000 15245000 6457800 8786700 10204000 4283500 5920300 0 0 0 10821000 4857500 5963300 14153000 5916900 8236400 31374 1342 32993 164030;164031;164032;164033;164034;164035;164036;164037 165023;165024;165025;165026;165027;165028;165029;165030 165025 8 SQDLESVQEVGGSYWQR GTVQQKRRQKMQQKKSQDLESVQEVGGSYW DLESVQEVGGSYWQRVTLILELLQHKKKLR K S Q Q R V 0 1 0 1 0 3 2 2 0 0 1 0 0 0 0 3 0 1 1 2 0 0 17 0 1966.9021 Q9H583;Q5T3Q7 Q9H583 1190 1206 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 3.4132E-07 91.858 By MS/MS By matching By MS/MS 1 1 1 1.2022 1.3202 9.0791 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1946 1.3202 NaN 1 0 Median 1.7177 1.5039 NaN 1 0 Median 1.2022 1.2629 NaN 1 0 Median NaN NaN NaN 0 0 Median 8238000 3580700 4657300 0 0 0 0 0 0 4179500 1816100 2363400 292030 119280 172750 3766500 1645300 2121100 0 0 0 31375 3086 32994 164038;164039;164040 165031;165032;165033 165032 3 SQDPTPPSAPQEATEGSK QSLASPPARDALQLRSQDPTPPSAPQEATE PTPPSAPQEATEGSKVTEPSAPCQALVSIG R S Q S K V 2 0 0 1 0 2 2 1 0 0 0 1 0 0 4 3 2 0 0 0 0 0 18 0 1825.833 Q9UPN7 Q9UPN7 770 787 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 2 0.0044902 27.409 By MS/MS 1 0.49879 0.42685 NaN 1 Median NaN NaN NaN 0 0 Median 0.49879 0.42685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1129400 796840 332550 0 0 0 1129400 796840 332550 0 0 0 0 0 0 0 0 0 0 0 0 31376 4356 32995 164041 165034 165034 1 SQDVDQLR PYMIHLLAHDPDFTRSQDVDQLRDIKECLW HDPDFTRSQDVDQLRDIKECLWFMLEVLMT R S Q L R D 0 1 0 2 0 2 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 959.46722 Q29RF7 Q29RF7 1018 1025 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.024653 43.246 By matching By MS/MS 1 1 1.1458 0.98308 3.5649 2 Median NaN NaN NaN 0 0 Median 1.1756 1.0082 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1168 0.95861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2580600 1090900 1489700 0 0 0 1981100 781550 1199500 0 0 0 599520 309330 290200 0 0 0 0 0 0 31377 3003 32996 164042;164043 165035 165035 1 SQEADVQDWEFR QDRVVGKPAQLGTQRSQEADVQDWEFRKRD TQRSQEADVQDWEFRKRDSQGTYSSRDAEL R S Q F R K 1 1 0 2 0 2 2 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 12 0 1508.6532 Q9C0C2;A0A2R8Y5C4 Q9C0C2 836 847 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 2 0.0013589 83.397 By MS/MS By matching 1 1 1.1485 1.0327 10.553 2 Median 0.98711 0.95842 NaN 1 0 Median 1.3364 1.1127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5219900 2329900 2890000 3735400 1791200 1944200 1484500 538660 945800 0 0 0 0 0 0 0 0 0 0 0 0 31378 3903 32997 164044;164045 165036 165036 0 SQEEPKDTFEHDPSESIDEFNK KAEGEPQEESPLKSKSQEEPKDTFEHDPSE TFEHDPSESIDEFNKSSATSGDIWPGLSAY K S Q N K S 0 0 1 3 0 1 5 0 1 1 0 2 0 2 2 3 1 0 0 0 0 0 22 1 2607.1249 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 183 204 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.00011397 34.009 By matching By matching By MS/MS 1 1 1 0.62121 0.69578 14.451 3 Median 0.60773 0.6391 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74012 0.84708 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62121 0.69578 NaN 1 0 Median NaN NaN NaN 0 0 Median 16541000 9842000 6698800 5644900 3425800 2219100 0 0 0 3438300 1908000 1530300 0 0 0 7457700 4508300 2949400 0 0 0 31379 4175 32998 164046;164047;164048 165037 165037 1 SQEGRPVQVIGALIGK PLVILNISDHWIRMRSQEGRPVQVIGALIG QEGRPVQVIGALIGKQEGRNIEVMNSFELL R S Q G K Q 1 1 0 0 0 2 1 3 0 2 1 1 0 0 1 1 0 0 0 2 0 0 16 1 1650.9417 Q7L5N1;E7EM64 Q7L5N1 60 75 COPS6 COP9 signalosome complex subunit 6 yes no 2;3 0.00063653 55.452 By MS/MS By matching By matching By matching 3 2 1 1 1.0635 1.0623 8.1957 7 Median 0.98807 0.96078 4.1719 3 0 Plateau 1.1594 1.0729 1.401 2 0 Median 1.0635 1.1565 NaN 1 0 Median 1.195 1.1277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27829000 13062000 14768000 19889000 9604400 10285000 1712700 864910 847790 6030900 2509400 3521500 196440 82977 113460 0 0 0 0 0 0 31380 855 32999 164049;164050;164051;164052;164053;164054;164055 165038;165039;165040 165040 3 SQEGSQFVK NYKKFGATLEIVTDKSQEGSQFVKGFGGIG EIVTDKSQEGSQFVKGFGGIGGILRYRVDF K S Q V K G 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 2 0 0 0 1 0 0 9 0 1008.4876 B7Z7P8;P62495 B7Z7P8 382 390 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 0.049787 31.074 By MS/MS 1 1.032 0.88475 NaN 1 Median NaN NaN NaN 0 0 Median 1.032 0.88475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2396300 1199200 1197000 0 0 0 2396300 1199200 1197000 0 0 0 0 0 0 0 0 0 0 0 0 31381 638 33000 164056 165041 165041 1 SQEMVHLVNK VEDRKPSGLNGEASKSQEMVHLVNKESSET GEASKSQEMVHLVNKESSETPDQFMTADET K S Q N K E 0 0 1 0 0 1 1 0 1 0 1 1 1 0 0 1 0 0 0 2 0 0 10 0 1183.6019 H0YD13;H0Y2P0;P16070;H0YE40 H0YD13 170 179 CD44 CD44 antigen yes no 2 0.035967 32.32 By MS/MS 1 0.84103 0.75263 NaN 1 Median NaN NaN NaN 0 0 Median 0.84103 0.75263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1084800 589950 494870 0 0 0 1084800 589950 494870 0 0 0 0 0 0 0 0 0 0 0 0 31382 1139 33001 164057 165042 165042 1 SQEQEVLER RVKPEEMMDERPKTRSQEQEVLERGGRFTR ERPKTRSQEQEVLERGGRFTRSQEEARKSH R S Q E R G 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1116.5411 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 270 278 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 3.2957E-12 149.65 By MS/MS By MS/MS 2 1 0.95794 1.2061 14.995 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95182 0.96541 10.933 2 1 Median NaN NaN NaN 0 0 Median 1.1851 1.2061 NaN 1 0 Median NaN NaN NaN 0 0 Median 33640000 16676000 16965000 0 0 0 0 0 0 5485400 2723500 2762000 0 0 0 28155000 13952000 14203000 0 0 0 31383 4560 33002 164058;164059;164060 165043;165044 165043 2 SQEQILEILR GVQGPLNVSLSEEGKSQEQILEILRFIRRE SEEGKSQEQILEILRFIRREKEIAETRFEV K S Q L R F 0 1 0 0 0 2 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1227.6823 P12270 P12270 1192 1201 TPR Nucleoprotein TPR yes yes 2 0.00011626 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 3 1 1 1 0.81638 0.86209 79.971 9 Median 0.59291 0.59175 60.997 3 2 Median 0.15553 0.12439 NaN 1 1 Median 0.88984 0.95464 14.42 2 1 Median 1.4864 1.3085 NaN 1 0 Median 1.0234 1.0731 NaN 1 1 Median 1.2777 1.0481 NaN 1 0 Median 72348000 50039000 22309000 11027000 6745000 4282100 26991000 23961000 3029900 30671000 17789000 12882000 1178400 455730 722720 2263100 1001900 1261300 217640 86412 131230 31384 1978 33003 164061;164062;164063;164064;164065;164066;164067;164068;164069;164070 165045;165046;165047;165048;165049;165050;165051;165052 165047 8 SQEQLAAELAEYTAK RAKEELERQAVDQIKSQEQLAAELAEYTAK SQEQLAAELAEYTAKIALLEEARRRKEDEV K S Q A K I 4 0 0 0 0 2 3 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 15 0 1650.8101 P15311;E7EQR4 P15311 413 427 EZR Ezrin yes no 2;3 5.3826E-09 121.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1067 1.0329 30.309 8 Median 0.96695 0.8779 18.608 2 0 Median NaN NaN NaN 0 0 Median 0.9196 0.91178 31.388 2 0 Median 1.0531 0.90706 22.751 2 0 Median 1.5058 1.5572 5.8107 2 2 Median NaN NaN NaN 0 0 Median 124640000 63302000 61336000 33208000 17758000 15451000 0 0 0 79568000 40083000 39485000 3000900 1463800 1537100 8860500 3997600 4863000 0 0 0 31385 879 33004 164071;164072;164073;164074;164075;164076;164077;164078 165053;165054;165055;165056;165057;165058;165059;165060;165061;165062;165063 165053 11 SQERPTFYR ______________________________ ______________________________ M S Q Y R Q 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 9 1 1182.5782 Q16539;B5TY33 Q16539 2 10 MAPK14 Mitogen-activated protein kinase 14 yes no 2 0.00063388 82.426 By MS/MS By matching 1 2 1.3536 1.1349 23.432 3 Median 0.88167 0.92767 NaN 1 0 Median 1.4647 1.2961 18.776 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23122000 11355000 11768000 10303000 5520700 4782000 12820000 5834000 6985600 0 0 0 0 0 0 0 0 0 0 0 0 31386 2987 33005 164079;164080;164081 165064;165065 165064 2 SQESGYYDR GPSLNPVLDYDHGSRSQESGYYDRMDYEDD YDHGSRSQESGYYDRMDYEDDRLRDGERCR R S Q D R M 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 2 0 0 0 9 0 1103.452 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 208 216 MATR3 Matrin-3 yes no 2 0.0020346 74.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.0838 1.1074 7.9728 7 Median NaN NaN NaN 0 0 Median 1.0838 0.9268 NaN 1 0 Median 1.0318 1.1074 NaN 1 0 Median 1.3818 1.1804 NaN 1 0 Median 1.0148 1.0703 2.8942 2 0 Median 1.3531 1.1365 1.7133 2 0 Median 11706000 5446500 6259600 0 0 0 2517500 1255600 1261900 1428200 761780 666400 828360 359920 468430 5178100 2328600 2849500 1754000 740610 1013300 31387 297 33006 164082;164083;164084;164085;164086;164087;164088 165066;165067;165068;165069;165070;165071;165072;165073;165074;165075;165076;165077 165071 12 SQESGYYDRMDYEDDRLR GPSLNPVLDYDHGSRSQESGYYDRMDYEDD SGYYDRMDYEDDRLRDGERCRDDSFFGETS R S Q L R D 0 3 0 4 0 1 2 1 0 0 1 0 1 0 0 2 0 0 3 0 0 0 18 2 2296.9655 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 208 225 MATR3 Matrin-3 yes no 3 0.020181 18.76 By matching By MS/MS 1 1 1.0137 1.1643 9.8229 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0938 1.2481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93953 1.0862 NaN 1 0 Median NaN NaN NaN 0 0 Median 25457000 12528000 12929000 0 0 0 0 0 0 7745500 3208400 4537000 0 0 0 17712000 9319400 8392400 0 0 0 31388 297 33007 164089;164090 165078 165078 1 SQETECTYFSTPLLLGK AMNGKEGVVECSFVKSQETECTYFSTPLLL ETECTYFSTPLLLGKKGIEKNLGIGKVSSF K S Q G K K 0 0 0 0 1 1 2 1 0 0 3 1 0 1 1 2 3 0 1 0 0 0 17 0 1972.9452 P40926;G3XAL0 P40926 280 296 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.044959 21.873 By MS/MS By matching By matching 1 1 1 0.98497 0.95629 13.724 3 Median 0.86975 0.84412 NaN 1 0 Median 1.3175 1.1103 NaN 1 0 Median 0.98497 0.95629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6627700 2790400 3837400 3096800 1457200 1639600 2145000 648080 1496900 1385900 685090 700850 0 0 0 0 0 0 0 0 0 31389 2292 33008 164091;164092;164093 165079 165079 1 SQEVEDKTKEYELLSDELNQK VLQALEELAVNYDQKSQEVEDKTKEYELLS KTKEYELLSDELNQKSATLASIDAELQKLK K S Q Q K S 0 0 1 2 0 2 5 0 0 0 3 3 0 0 0 2 1 0 1 1 0 0 21 2 2524.2181 P33176 P33176 506 526 KIF5B Kinesin-1 heavy chain yes yes 3 2.7595E-07 49.528 By MS/MS By matching 1 1 1.1487 1.2893 16.12 2 Median 1.0974 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2025 1.4449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21702000 9837000 11865000 16760000 7833000 8927300 0 0 0 4941300 2004000 2937300 0 0 0 0 0 0 0 0 0 31390 2221 33009 164094;164095 165080 165080 1 SQFFITFR RGILSMANSGPNSNRSQFFITFRSCAYLDK SGPNSNRSQFFITFRSCAYLDKKHTIFGRV R S Q F R S 0 1 0 0 0 1 0 0 0 1 0 0 0 3 0 1 1 0 0 0 0 0 8 0 1044.5393 Q13356 Q13356 378 385 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 yes yes 2 0.027608 41.029 By MS/MS By matching 1 1 1.1318 1.0812 17.882 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1727 1.227 NaN 1 0 Median 1.0924 0.95281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3192600 1772100 1420500 0 0 0 0 0 0 3105300 1733900 1371300 87331 38168 49162 0 0 0 0 0 0 31391 2807 33010 164096;164097 165081 165081 1 SQFSDKPVQDR KSDAKKAASKTLLEKSQFSDKPVQDRGLVV LLEKSQFSDKPVQDRGLVVTDLKAESVVLE K S Q D R G 0 1 0 2 0 2 0 0 0 0 0 1 0 1 1 2 0 0 0 1 0 0 11 1 1305.6313 Q9BWS9;E9PPA0;E9PI70;E9PIP0;E9PRL3;E9PPH0;E9PKF1 Q9BWS9 38 48 CHID1 Chitinase domain-containing protein 1 yes no 2;3 0.010581 54.608 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.1299 1.0977 5.2752 7 Median 1.033 1.1009 NaN 1 0 Median 1.2067 1.1253 3.5124 2 0 Median 0.91024 1.0334 0.54202 2 0 Median 1.192 1.0489 7.9915 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6747400 3176300 3571100 234980 123150 111830 1806200 834190 972060 2958700 1449300 1509400 1747500 769670 977850 0 0 0 0 0 0 31392 3874 33011 164098;164099;164100;164101;164102;164103;164104 165082;165083;165084;165085 165085 4 SQFTITPGSEQIR AAVAKQALAHGLKCKSQFTITPGSEQIRAT CKSQFTITPGSEQIRATIERDGYAQILRDL K S Q I R A 0 1 0 0 0 2 1 1 0 2 0 0 0 1 1 2 2 0 0 0 0 0 13 0 1462.7416 A2A274;Q99798 A2A274 437 449 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.00045528 83.397 By MS/MS By MS/MS 1 1 0.54221 0.53283 15.241 2 Median 0.62782 0.59346 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.46828 0.47839 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59329000 35148000 24181000 50789000 29390000 21399000 0 0 0 8540500 5758300 2782200 0 0 0 0 0 0 0 0 0 31393 495 33012 164105;164106 165086;165087 165086 2 SQFYFLTK VPESFTSEAYQWLNRSQFYFLTKSQSLLTF AYQWLNRSQFYFLTKSQSLLTFSTKSPEEK R S Q T K S 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 1 0 1 0 0 0 8 0 1032.528 Q8IWA0 Q8IWA0 654 661 WDR75 WD repeat-containing protein 75 yes yes 2 0.014384 51.193 By MS/MS By matching By matching 1 1 1 1.1256 1.0194 64.201 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2502 1.3405 NaN 1 0 Median 1.1256 1.0194 NaN 1 0 Median 0.32908 0.39444 NaN 1 0 Median NaN NaN NaN 0 0 Median 8101100 3883600 4217600 0 0 0 0 0 0 7331800 3295900 4035800 93998 45844 48154 675390 541800 133590 0 0 0 31394 3322 33013 164107;164108;164109 165088;165089 165088 2 SQGCSEQVLTVLK SWVQSYCRLSHCRSRSQGCSEQVLTVLKTV SRSQGCSEQVLTVLKTVSLLDENNVSSYLS R S Q L K T 0 0 0 0 1 2 1 1 0 0 2 1 0 0 0 2 1 0 0 2 0 0 13 0 1447.7341 P78527 P78527 3290 3302 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 8.3164E-07 118.28 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.232 1.2205 25.082 5 Median 0.67994 0.73889 NaN 1 0 Median 1.3429 1.262 4.7236 2 0 Median 0.93133 0.99117 NaN 1 0 Median 1.389 1.3521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82501000 39844000 42657000 4795100 2927600 1867500 24959000 9659700 15299000 49030000 25732000 23298000 3717200 1524800 2192400 0 0 0 0 0 0 31395 2647 33014 164110;164111;164112;164113;164114 165090;165091;165092;165093;165094;165095 165091 6 SQGFPDTYR HPEQHRVVSVRECARSQGFPDTYRLFGNIL VRECARSQGFPDTYRLFGNILDKHRQVGNA R S Q Y R L 0 1 0 1 0 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 9 0 1069.4829 P26358;K7ENW7 P26358 1556 1564 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.0015558 80.219 By matching By MS/MS By MS/MS 1 1 1 1.21 1.0467 4.481 3 Median NaN NaN NaN 0 0 Median 1.21 1.0142 NaN 1 0 Median 0.96022 1.0467 NaN 1 0 Median 1.2574 1.1079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35719000 17156000 18563000 0 0 0 1721200 815400 905790 27420000 13595000 13826000 6578200 2746400 3831800 0 0 0 0 0 0 31396 2142 33015 164115;164116;164117 165096;165097;165098 165096 3 SQGGEPTYNVAVGR SLYVDGDCTMDIRTKSQGGEPTYNVAVGRA KSQGGEPTYNVAVGRAGRALVIVMGKEGVH K S Q G R A 1 1 1 0 0 1 1 3 0 0 0 0 0 0 1 1 1 0 1 2 0 0 14 0 1433.6899 C9J0J7;G5E9Q6;C9JQ45;C9J712;P35080 C9J0J7 43 56 PFN2 Profilin;Profilin-2 no no 2 1.6477E-16 187.42 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.92742 0.89587 13.206 5 Median 0.92742 0.89587 NaN 1 0 Median 1.2238 1.0504 NaN 1 0 Median 0.75835 0.79409 12.554 2 0 Median 1.1624 0.91363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 338210000 162120000 176090000 84848000 42729000 42119000 232880000 107510000 125360000 15911000 9712800 6198700 4573400 2165500 2407900 0 0 0 0 0 0 31397 668;680 33016 164118;164119;164120;164121;164122 165099;165100;165101;165102;165103;165104;165105;165106;165107;165108;165109 165107 11 SQGKVLQATVVAVGSGSK AAETVTKGGIMLPEKSQGKVLQATVVAVGS KVLQATVVAVGSGSKGKGGEIQPVSVKVGD K S Q S K G 2 0 0 0 0 2 0 3 0 0 1 2 0 0 0 3 1 0 0 4 0 0 18 1 1714.9577 S4R3N1;P61604;B8ZZL8 P61604 37 54 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2;3 2.8134E-12 150.12 By MS/MS By MS/MS 1 3 1.291 1.0973 16.196 4 Median 1.1098 1.0393 NaN 1 0 Median 1.3364 1.1585 19.536 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23603000 9739200 13864000 4088800 1565700 2523100 19515000 8173500 11341000 0 0 0 0 0 0 0 0 0 0 0 0 31398 2560;4561 33017 164123;164124;164125;164126 165110;165111;165112;165113;165114 165113 5 SQGKVLQATVVAVGSGSKGK AAETVTKGGIMLPEKSQGKVLQATVVAVGS LQATVVAVGSGSKGKGGEIQPVSVKVGDKV K S Q G K G 2 0 0 0 0 2 0 4 0 0 1 3 0 0 0 3 1 0 0 4 0 0 20 2 1900.0742 S4R3N1;P61604;B8ZZL8 P61604 37 56 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 3 7.174E-11 93.804 By matching By MS/MS 1 1 1.1355 1.0193 6.6763 2 Median 0.96264 0.97228 NaN 1 0 Median 1.3394 1.0686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12862000 5605300 7256500 925660 564180 361480 11936000 5041200 6895000 0 0 0 0 0 0 0 0 0 0 0 0 31399 2560;4561 33018 164127;164128 165115;165116 165116 2 SQGLFDQFR AGDPQLVAMIVNHLKSQGLFDQFRRDCLAD IVNHLKSQGLFDQFRRDCLADVDTKPAYQN K S Q F R R 0 1 0 1 0 2 0 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 9 0 1096.5302 Q8NFC6;F8WDD0 Q8NFC6 63 71 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 2 0.0027865 69.598 By MS/MS By matching 1 2 1.0026 0.91694 13.396 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0026 1.0819 NaN 1 0 Median 1.0038 0.87229 7.0598 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4789000 2378200 2410800 0 0 0 0 0 0 4587500 2276400 2311100 201520 101770 99750 0 0 0 0 0 0 31400 3434 33019 164129;164130;164131 165117;165118 165118 2 SQGLFDQFRR AGDPQLVAMIVNHLKSQGLFDQFRRDCLAD VNHLKSQGLFDQFRRDCLADVDTKPAYQNL K S Q R R D 0 2 0 1 0 2 0 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 10 1 1252.6313 Q8NFC6;F8WDD0 Q8NFC6 63 72 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 3 0.0089556 31.843 By MS/MS 1 0.87592 0.96264 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87592 0.96264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3740600 1885100 1855500 0 0 0 0 0 0 3740600 1885100 1855500 0 0 0 0 0 0 0 0 0 31401 3434 33020 164132 165119 165119 1 SQGLSQLYHNQSQGLLSQLQGQSK PTQSQFGEMGGKFMKSQGLSQLYHNQSQGL NQSQGLLSQLQGQSKDMPPRFSKKGQLNAD K S Q S K D 0 0 1 0 0 7 0 3 1 0 5 1 0 0 0 5 0 0 1 0 0 0 24 0 2628.3256 P78344;D3DQV9 P78344 432 455 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 3 0.00031738 36.576 By MS/MS 1 1.2212 1.184 NaN 1 Median 1.2212 1.184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8575800 3594900 4980900 8575800 3594900 4980900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31402 2639 33021 164133 165120 165120 1 SQGMASLNLPAVSWK QTVKASYVASTKYQKSQGMASLNLPAVSWK SQGMASLNLPAVSWKMKAPEKKPLVKREKQ K S Q W K M 2 0 1 0 0 1 0 1 0 0 2 1 1 0 1 3 0 1 0 1 0 0 15 0 1587.8079 P35221;E5RGY7 P35221 846 860 CTNNA1 Catenin alpha-1 yes no 2 0.010681 29.936 By MS/MS 1 0.89828 0.96987 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89828 0.96987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2486400 1206600 1279800 0 0 0 0 0 0 2486400 1206600 1279800 0 0 0 0 0 0 0 0 0 31403 2232 33022 164134 165121 165121 1 SQGMLALSISPNR NVDQKWQKFIPGSEKSQGMLALSISPNRRY EKSQGMLALSISPNRRYLAISETVQEKPAI K S Q N R R 1 1 1 0 0 1 0 1 0 1 2 0 1 0 1 3 0 0 0 0 0 0 13 0 1372.7133 E9PRV3;A0A087WVY5;Q96MR6 E9PRV3 57 69 CFAP57 Cilia- and flagella-associated protein 57 yes no 2 0.0023714 48.091 By MS/MS By matching 2 1 0.83378 0.82657 36.855 3 Median 0.92123 0.89205 10.782 2 0 Median 0.55984 0.4777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23876000 10835000 13041000 20460000 8898100 11562000 3416300 1937100 1479200 0 0 0 0 0 0 0 0 0 0 0 0 31404 46 33023 164135;164136;164137 165122;165123 165123 2 SQGPLEVAEAAVSQSSGLAAK AGGKEFLETVKELRKSQGPLEVAEAAVSQS VAEAAVSQSSGLAAKFVIHCHIPQWGSDKC K S Q A K F 5 0 0 0 0 2 2 2 0 0 2 1 0 0 1 4 0 0 0 2 0 0 21 0 1999.0222 Q9P0M6;Q5SQT3 Q9P0M6 251 271 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 2;3 1.7359E-06 40.81 By MS/MS By matching 4 1 0.71395 0.71123 57.5 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68771 0.68067 9.1787 4 0 Median 2.9572 2.4681 NaN 1 0 Median 13411000 7197900 6213400 0 0 0 0 0 0 0 0 0 0 0 0 12021000 6713300 5307500 1390500 484530 905920 31405 4206 33024 164138;164139;164140;164141;164142 165124;165125;165126;165127;165128 165127 5 SQGQDVTSSVYFMK EKYEVFRTEEEEKIKSQGQDVTSSVYFMKQ KSQGQDVTSSVYFMKQTISNACGTIGLIHA K S Q M K Q 0 0 0 1 0 2 0 1 0 0 0 1 1 1 0 3 1 0 1 2 0 0 14 0 1575.7239 P15374;A0A087WTB8;Q5TBK7 P15374 75 88 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 2 4.031E-05 85.288 By MS/MS By matching By matching 1 1 1 1.268 1.1711 9.2741 3 Plateau 1.268 1.1722 NaN 1 0 Median 1.1901 1.0054 NaN 1 0 Median 1.0298 0.99203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43552000 19053000 24500000 38807000 16899000 21908000 2911100 1404400 1506800 1834300 749040 1085200 0 0 0 0 0 0 0 0 0 31406 2017 33025 164143;164144;164145 165129;165130 165130 2 SQHDILQMICSK RKSGNLPSKRVSISRSQHDILQMICSKRRS ISRSQHDILQMICSKRRSGASEANLIVAKS R S Q S K R 0 0 0 1 1 2 0 0 1 2 1 1 1 0 0 2 0 0 0 0 0 0 12 0 1458.6959 P46013 P46013 634 645 MKI67 Antigen KI-67 yes yes 3 0.0034176 53.448 By MS/MS 1 1.3257 1.4327 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3257 1.4327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3885600 1856200 2029400 0 0 0 0 0 0 3885600 1856200 2029400 0 0 0 0 0 0 0 0 0 31407 2335 33026 164146 165131 165131 1 SQHLHEVLSR KQFPFLASNYEVIMKSQHLHEVLSRADPKK EVIMKSQHLHEVLSRADPKKALHHFRAIKK K S Q S R A 0 1 0 0 0 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1204.6313 O95602;B9ZVN9 O95602 1050 1059 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2;3 0.0046796 46.891 By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1644 1.143 4.2847 5 Median 1.1644 1.1534 NaN 1 0 Median 1.2877 1.083 NaN 1 0 Median 1.0659 1.1808 4.5898 2 1 Median 1.2867 1.129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8613400 4027300 4586100 374770 193130 181640 1905000 829870 1075100 5760000 2767300 2992800 573630 237070 336560 0 0 0 0 0 0 31408 1781 33027 164147;164148;164149;164150;164151 165132;165133;165134;165135;165136;165137;165138 165133 7 SQHQEDPNNTSLLTNKPALLR WACFNRYYGAISKLKSQHQEDPNNTSLLTN PNNTSLLTNKPALLRSLFTVGALCRHFDFD K S Q L R S 1 1 3 1 0 2 1 0 1 0 4 1 0 0 2 2 2 0 0 0 0 0 21 1 2375.2193 A0A590UJS4;Q6KC79 A0A590UJS4 2122 2142 NIPBL Nipped-B-like protein yes no 4 0.0065516 30.587 By MS/MS By MS/MS 1 1 0.80659 0.92472 38.634 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60719 0.70367 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0715 1.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median 17509000 10115000 7394000 0 0 0 0 0 0 8627800 5338500 3289300 0 0 0 8881600 4776900 4104700 0 0 0 31409 488 33028 164152;164153 165139;165140 165139 2 SQHYDLVLNGNEIGGGSIR PSDIHLLYTEPKKARSQHYDLVLNGNEIGG DLVLNGNEIGGGSIRIHNAELQRYILATLL R S Q I R I 0 1 2 1 0 1 1 4 1 2 2 0 0 0 0 2 0 0 1 1 0 0 19 0 2028.0025 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3IS01 Q6PI48 524 542 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 3 0.0026427 38.271 By MS/MS 2 1.5701 1.3112 5.6877 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5701 1.3112 5.6877 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3998300 1479200 2519100 0 0 0 0 0 0 0 0 0 3998300 1479200 2519100 0 0 0 0 0 0 31410 3171 33029 164154;164155 165141;165142 165141 2 SQICDNAALYAQK QTDDEEEAGLLELLKSQICDNAALYAQKYD LKSQICDNAALYAQKYDEEFQRYLPRFVTA K S Q Q K Y 3 0 1 1 1 2 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 13 0 1480.698 P55060 P55060 269 281 CSE1L Exportin-2 yes yes 2 0.0015521 51.927 By MS/MS 1 1.1047 0.96642 NaN 1 Median NaN NaN NaN 0 0 Median 1.1047 0.96642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4257900 2025400 2232500 0 0 0 4257900 2025400 2232500 0 0 0 0 0 0 0 0 0 0 0 0 31411 2493 33030 164156 165143 165143 1 SQIDVALSQDSTYQGER QPELSQDSYLGDEFKSQIDVALSQDSTYQG IDVALSQDSTYQGERAYQHGGVTGLSQY__ K S Q E R A 1 1 0 2 0 3 1 1 0 1 1 0 0 0 0 3 1 0 1 1 0 0 17 0 1895.8861 Q92900 Q92900 1100 1116 UPF1 Regulator of nonsense transcripts 1 yes yes 2 5.4654E-11 108.17 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0389 0.94265 29.415 4 Median 1.1915 1.1521 NaN 1 0 Median 0.85866 0.7553 NaN 1 0 Median 1.2388 1.3618 NaN 1 1 Median 0.90578 0.7713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11836000 5895200 5940600 5025500 2324000 2701500 1013400 548230 465160 3675400 1932100 1743400 2121500 1091000 1030600 0 0 0 0 0 0 31412 3564 33031 164157;164158;164159;164160 165144;165145;165146 165146 3 SQIEQLK TQLLQDVQDENKLFKSQIEQLKQQNYQQAS QDENKLFKSQIEQLKQQNYQQASSFPPHEE K S Q L K Q 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 7 0 844.46543 Q86UP2;G3V4Y7;H0YJV5 Q86UP2 975 981 KTN1 Kinectin yes no 2 0.022964 57.281 By MS/MS 1 1.0763 0.93329 NaN 1 Median NaN NaN NaN 0 0 Median 1.0763 0.93329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3245600 1569200 1676400 0 0 0 3245600 1569200 1676400 0 0 0 0 0 0 0 0 0 0 0 0 31413 3280 33032 164161 165147 165147 1 SQIFSTASDNQPTVTIK MTKLIPRNTVVPTKKSQIFSTASDNQPTVT IFSTASDNQPTVTIKVYEGERPLTKDNHLL K S Q I K V 1 0 1 1 0 2 0 0 0 2 0 1 0 1 1 3 3 0 0 1 0 0 17 0 1835.9265 P11021 P11021 448 464 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 3.4379E-13 119.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 2 1 1.1533 1.0148 17.33 13 Median 1.0154 0.91743 9.4191 4 0 Median 1.1593 1.0148 9.064 3 0 Median 0.97551 0.95574 NaN 1 0 Median 1.1786 1.0119 4.3238 2 0 Median 1.4217 1.4545 18.26 2 0 Median 1.4038 1.1612 NaN 1 0 Median 332490000 160140000 172340000 225390000 109710000 115680000 22316000 10344000 11972000 65242000 32112000 33130000 7550300 3705100 3845200 10608000 3675900 6932200 1378300 590800 787460 31414 1948 33033 164162;164163;164164;164165;164166;164167;164168;164169;164170;164171;164172;164173;164174 165148;165149;165150;165151;165152;165153;165154;165155;165156;165157;165158;165159;165160;165161;165162;165163;165164;165165;165166;165167;165168;165169;165170;165171 165150 24 SQIHDIVLVGGSTR LDPVEKALRDAKLDKSQIHDIVLVGGSTRI KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K S Q T R I 0 1 0 1 0 1 0 2 1 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1480.7998 P11142;E9PKE3;E9PNE6;E9PN89;A8K7Q2 P11142 329 342 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 5.8016E-08 163.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 4 7 6 7 1.2066 1.0757 10.642 35 Median 1.2282 1.182 2.413 5 0 Median 1.244 1.0653 12.656 6 0 Median 1.1271 1.116 13.606 4 0 Median 1.2476 1.0581 8.9997 7 0 Median 1.0978 1.0912 11.512 6 1 Median 1.2218 1.0103 9.3745 7 0 Median 2376000000 1078600000 1297500000 802190000 353620000 448570000 586670000 266420000 320250000 520360000 244570000 275790000 236700000 103070000 133630000 174900000 85945000 88957000 55222000 24927000 30295000 31415 1950 33034 164175;164176;164177;164178;164179;164180;164181;164182;164183;164184;164185;164186;164187;164188;164189;164190;164191;164192;164193;164194;164195;164196;164197;164198;164199;164200;164201;164202;164203;164204;164205;164206;164207;164208;164209 165172;165173;165174;165175;165176;165177;165178;165179;165180;165181;165182;165183;165184;165185;165186;165187;165188;165189;165190;165191;165192;165193;165194;165195;165196;165197;165198;165199;165200;165201;165202;165203;165204;165205;165206;165207;165208;165209;165210;165211;165212;165213;165214;165215;165216;165217;165218;165219;165220;165221;165222;165223;165224 165220 53 SQISSVNSDVEALRR AHREEMERELEKSQRSQISSVNSDVEALRR SQISSVNSDVEALRRQYLEELQSVQRELEV R S Q R R Q 1 2 1 1 0 1 1 0 0 1 1 0 0 0 0 4 0 0 0 2 0 0 15 1 1659.854 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2;H7C3G6 A0A494BZV2 2180 2194 MPRIP Myosin phosphatase Rho-interacting protein yes no 3 0.00010748 49.482 By matching By MS/MS 1 1 1.0336 1.2015 3.7801 2 Median 1.0529 1.1698 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0147 1.2341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15654000 6761100 8892800 2683500 1245200 1438300 0 0 0 12970000 5515800 7454500 0 0 0 0 0 0 0 0 0 31416 453 33035 164210;164211 165225 165225 1 SQIVTNVR ISLGSRTRAIGNAAKSQIVTNVRNTIHGFK AIGNAAKSQIVTNVRNTIHGFKKLHGRSFD K S Q V R N 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 8 0 915.51378 O95757;E9PDE8;D6RJ96 O95757 54 61 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.0071626 68.214 By MS/MS By MS/MS 2 2 1.2314 1.1998 26.908 4 Median 1.2314 1.1998 3.3699 2 0 Median 1.1035 0.95699 40.613 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7330800 3191400 4139400 1035500 446820 588670 6295300 2744600 3550700 0 0 0 0 0 0 0 0 0 0 0 0 31417 1790 33036 164212;164213;164214;164215 165226;165227 165227 2 SQIYGSR NTSTGGLLLPSDTKRSQIYGSRQIILEKEE LLPSDTKRSQIYGSRQIILEKEETEELKRF R S Q S R Q 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 2 0 0 1 0 0 0 7 0 809.40317 P12956;B1AHC9 P12956 319 325 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.010821 81.381 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.3203 1.2028 5.2028 4 Median 1.2651 1.2813 NaN 1 0 Median 1.4164 1.2258 NaN 1 0 Median 1.0654 1.1345 NaN 1 0 Median 1.3778 1.1803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9398600 4218200 5180400 1741300 767460 973820 5302000 2281800 3020200 2089900 1056200 1033800 265380 112790 152590 0 0 0 0 0 0 31418 1985 33037 164216;164217;164218;164219 165228;165229;165230;165231;165232 165229 5 SQKEEDEQEDLTK KSGKKGQASLYGKRRSQKEEDEQEDLTKDM RRSQKEEDEQEDLTKDMEDPTPVPNIEEVV R S Q T K D 0 0 0 2 0 2 4 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 13 1 1577.7057 Q92922 Q92922 357 369 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.008345 50.284 By matching By MS/MS 2 1 0.96428 1.0159 13.141 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96525 1.1005 11.301 2 0 Median 0.96428 0.91855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2039200 1024700 1014500 0 0 0 0 0 0 1234700 623010 611690 804500 401720 402780 0 0 0 0 0 0 31419 3567 33038 164220;164221;164222 165233 165233 1 SQLDIIIHSLK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI RFSKSQLDIIIHSLKKCDISLQFFLPFSLG K S Q L K K 0 0 0 1 0 1 0 0 1 3 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1265.7343 P13010 P13010 145 155 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.00069523 77.662 By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 1.0376 1.054 5.9601 10 Median 1.0376 0.99783 4.7064 2 0 Median 1.3123 1.1483 2.9979 2 0 Median 0.97446 1.029 2.47 4 0 Median 1.2853 1.1122 0.95833 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103230000 46489000 56740000 7159800 3457000 3702700 50220000 21490000 28730000 23495000 11732000 11763000 22354000 9810200 12544000 0 0 0 0 0 0 31420 1986 33039 164223;164224;164225;164226;164227;164228;164229;164230;164231;164232 165234;165235;165236;165237;165238;165239;165240;165241 165239 7 SQLDIIIHSLKK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI FSKSQLDIIIHSLKKCDISLQFFLPFSLGK K S Q K K C 0 0 0 1 0 1 0 0 1 3 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1393.8293 P13010 P13010 145 156 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.0010192 43.991 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.1571 1.1875 10.899 5 Median 1.1571 1.1875 NaN 1 0 Median 1.4238 1.378 NaN 1 0 Median 1.0321 1.1589 2.8376 2 0 Median 1.4919 1.4575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56613000 25943000 30670000 15967000 6722400 9244200 4704800 1972600 2732200 32264000 15812000 16452000 3678200 1436300 2241900 0 0 0 0 0 0 31421 1986 33040 164233;164234;164235;164236;164237 165242;165243;165244;165245;165246;165247 165245 6 SQLDLFDDVGTFASGPPK QVIEQETPVSAKSSRSQLDLFDDVGTFASG DLFDDVGTFASGPPKYKDNPFSLGESFGSR R S Q P K Y 1 0 0 3 0 1 0 2 0 0 2 1 0 2 2 2 1 0 0 1 0 0 18 0 1892.9156 E9PQP3;A0A0D9SF70;G5E9L0;Q8N6H7;H0YDN9 E9PQP3 204 221 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 2 0.0044902 27.409 By matching By MS/MS By matching 1 1 1 1.2804 1.1008 24.774 3 Median 1.0138 0.98272 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5344 1.5793 NaN 1 0 Median 1.2804 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3124000 1300900 1823100 921110 381710 539400 0 0 0 1954600 807830 1146700 248360 111370 136990 0 0 0 0 0 0 31422 266 33041 164238;164239;164240 165248 165248 1 SQLEESISQLR YSVPEGQSKYVEEARSQLEESISQLRHYCE EEARSQLEESISQLRHYCEPYTTWCQETYS R S Q L R H 0 1 0 0 0 2 2 0 0 1 2 0 0 0 0 3 0 0 0 0 0 0 11 0 1288.6623 H7C1U8;Q9BUR5;G3V1B6 H7C1U8 38 48 APOO Apolipoprotein O yes no 2 0.00011418 142.43 By MS/MS By MS/MS By MS/MS 1 2 3 1.2474 1.146 103.49 6 Median 1.0074 0.94112 NaN 1 0 Median 1.4266 1.194 1.2118 2 0 Median 11.396 12.18 147.07 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173080000 77264000 95814000 111500000 54723000 56778000 42274000 17780000 24495000 19304000 4761900 14542000 0 0 0 0 0 0 0 0 0 31423 1261 33042 164241;164242;164243;164244;164245;164246 165249;165250;165251;165252;165253;165254;165255;165256 165250 8 SQLETSLKR ANPWDGKSLKPDSVRSQLETSLKRLQCPQV KPDSVRSQLETSLKRLQCPQVDLFYLHAPD R S Q K R L 0 1 0 0 0 1 1 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 9 1 1060.5877 H3BLU7;O43488;A0A499FJT0;Q8NHP1;H7C5H7 H3BLU7 111 119 AKR7A2;AKR7L Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4 yes no 2 0.0164 47.198 By MS/MS By matching 1 1 1.2711 1.2063 20.082 2 Median 1.0527 1.0466 NaN 1 0 Median 1.5349 1.3904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5625100 2348900 3276200 3302000 1471700 1830300 2323100 877260 1445900 0 0 0 0 0 0 0 0 0 0 0 0 31424 1206 33043 164247;164248 165257;165258 165257 2 SQLGAHHTTPVGDGAAGTR ______________________________ AHHTTPVGDGAAGTRGLAAPGSRDHQKEKS R S Q T R G 3 1 0 1 0 1 0 4 2 0 1 0 0 0 1 1 3 0 0 1 0 0 19 0 1831.8925 E9PJ42;Q5BJD5 E9PJ42 10 28 TMEM41B Transmembrane protein 41B yes no 3;4 0.00059792 30.956 By MS/MS By MS/MS By MS/MS By matching By matching 6 7 2 1 1 1.0042 0.9355 8.5752 17 Median 0.8959 0.88323 9.0471 6 0 Median 1.1556 0.97792 8.3332 7 0 Median 1.0031 0.94013 0.69918 2 0 Median 0.9781 0.79859 NaN 1 0 Median 1.0326 0.99974 NaN 1 0 Median NaN NaN NaN 0 0 Median 25412000 12484000 12928000 10438000 5385700 5052000 11783000 5553600 6229800 2312500 1110300 1202200 270800 137550 133250 607710 296670 311040 0 0 0 31425 941 33044 164249;164250;164251;164252;164253;164254;164255;164256;164257;164258;164259;164260;164261;164262;164263;164264;164265 165259;165260;165261;165262;165263;165264;165265;165266;165267;165268;165269;165270 165270 12 SQLIDELADK CNEEFTIFNRVDISRSQLIDELADKFNRLL VDISRSQLIDELADKFNRLLEDFLQEGEEP R S Q D K F 1 0 0 2 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1130.5819 Q8N3U4 Q8N3U4 655 664 STAG2 Cohesin subunit SA-2 yes yes 2 0.0088278 46.001 By matching By MS/MS 1 1 1.2048 1.1562 34.892 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3667 1.4798 NaN 1 0 Median 1.0621 0.90342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5312300 2611700 2700500 0 0 0 0 0 0 3107000 1475600 1631400 2205200 1136200 1069100 0 0 0 0 0 0 31426 3369 33045 164266;164267 165271;165272 165272 2 SQLIDELADKFNR CNEEFTIFNRVDISRSQLIDELADKFNRLL SRSQLIDELADKFNRLLEDFLQEGEEPDED R S Q N R L 1 1 1 2 0 1 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 13 1 1547.7944 Q8N3U4 Q8N3U4 655 667 STAG2 Cohesin subunit SA-2 yes yes 2;3 3.5732E-06 103.22 By MS/MS By MS/MS By matching 3 2 1 0.87828 0.93143 20.094 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97019 1.0995 29.864 3 0 Plateau NaN NaN NaN 0 0 Median 0.87872 0.98222 0.89654 2 1 Median 0.89709 0.82667 NaN 1 0 Median 26312000 12920000 13392000 0 0 0 0 0 0 19896000 9775800 10121000 0 0 0 6064500 3000600 3063900 351500 143510 207980 31427 3369 33046 164268;164269;164270;164271;164272;164273 165273;165274;165275;165276;165277;165278 165275 6 SQLLAPPPPSAPPGNK SSQASPSRPSQGHSKSQLLAPPPPSAPPGN QLLAPPPPSAPPGNKTTVQQEPLESGAKNK K S Q N K T 2 0 1 0 0 1 0 1 0 0 2 1 0 0 6 2 0 0 0 0 0 0 16 0 1569.8515 P49750;F8VU51 P49750 242 257 YLPM1 YLP motif-containing protein 1 yes no 2 5.1372E-06 73.273 By MS/MS By MS/MS 1 1 0.45587 0.48993 91.958 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85172 0.93871 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.244 0.2557 NaN 1 0 Median NaN NaN NaN 0 0 Median 22561000 12290000 10270000 0 0 0 0 0 0 17151000 8167200 8983900 0 0 0 5409500 4123100 1286400 0 0 0 31428 2395 33047 164274;164275 165279;165280;165281 165279 3 SQLLGSAHEVQR LNERWRSLQQLAEERSQLLGSAHEVQRFHR EERSQLLGSAHEVQRFHRDADETKEWIEEK R S Q Q R F 1 1 0 0 0 2 1 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1323.6895 A0A0D9SF54;Q13813 Q13813 1226 1237 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 2.3576E-07 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 7 4 5 3 3 1.1247 0.99923 20.595 26 Median 1.1929 1.1627 7.5386 4 1 Median 1.2278 0.98138 23.988 7 1 Median 0.77523 0.8473 28.669 4 0 Median 1.1091 0.96662 2.5722 5 2 Median 1.1744 1.1982 15.746 3 2 Median 1.2183 1.0021 11.987 3 1 Median 392330000 184270000 208060000 26738000 11978000 14759000 111380000 49760000 61616000 87410000 43881000 43528000 44810000 21226000 23584000 59487000 29224000 30263000 62507000 28202000 34305000 31429 264;2838 33048 164276;164277;164278;164279;164280;164281;164282;164283;164284;164285;164286;164287;164288;164289;164290;164291;164292;164293;164294;164295;164296;164297;164298;164299;164300;164301 165282;165283;165284;165285;165286;165287;165288;165289;165290;165291;165292;165293;165294;165295;165296;165297;165298;165299;165300;165301;165302;165303;165304;165305;165306;165307;165308;165309;165310;165311;165312;165313;165314;165315;165316;165317;165318;165319 165297 38 SQLLKDPQVLFAGYK FTINKEDHTLGNIIKSQLLKDPQVLFAGYK SQLLKDPQVLFAGYKVPHPLEHKIIIRVQT K S Q Y K V 1 0 0 1 0 2 0 1 0 0 3 2 0 1 1 1 0 0 1 1 0 0 15 1 1705.9403 A0A0B4J2F8;F6S314;E2QRJ6;A6NFM0;Q9H1A7;Q9GZM3;P52435 A0A0B4J2F8 47 61 POLR2J3;POLR2J;POLR2J2 DNA-directed RNA polymerase II subunit RPB11-b2;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-a yes no 2;3 1.4985E-05 90.653 By MS/MS By matching By MS/MS 2 1 2 0.91644 0.8886 6.7066 5 Median 0.89394 0.83715 3.5152 2 0 Median 1.1056 0.95848 NaN 1 0 Median 0.9016 0.9171 4.464 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17678000 8513800 9164200 6426100 3397500 3028600 564550 280470 284080 10687000 4835800 5851600 0 0 0 0 0 0 0 0 0 31430 225 33049 164302;164303;164304;164305;164306 165320;165321;165322;165323;165324;165325 165325 6 SQLLQYVYNLVPR AEINILLCGDPGTSKSQLLQYVYNLVPRGQ SKSQLLQYVYNLVPRGQYTSGKGSSAVGLT K S Q P R G 0 1 1 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 2 2 0 0 13 0 1591.8722 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 467 479 MCM4 DNA replication licensing factor MCM4 yes no 2 3.8547E-07 139.96 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 0.96752 0.8709 26.863 8 Median 0.84818 0.83139 6.1935 2 0 Median 1.0819 0.93503 29.755 3 0 Median 0.6824 0.72998 NaN 1 0 Median 0.97939 0.87319 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.864 1.4657 NaN 1 0 Median 24372000 12692000 11680000 7487700 3919800 3567900 14343000 7343100 7000000 2335800 1342900 992870 70313 39474 30839 0 0 0 135210 47088 88123 31431 441 33050 164307;164308;164309;164310;164311;164312;164313;164314 165326;165327;165328;165329;165330;165331;165332;165333;165334;165335;165336 165335 11 SQLLSYIDR GNINICLMGDPGVAKSQLLSYIDRLAPRSQ DPGVAKSQLLSYIDRLAPRSQYTTGRGSSG K S Q D R L 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1093.5768 P33993 P33993 388 396 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.00082536 95.815 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1 1.5135 1.3401 72.306 7 Median 1.1728 1.1088 NaN 1 0 Median 1.441 1.2653 22.945 2 0 Median 1.5135 1.5195 NaN 1 0 Median 1.5622 1.3401 NaN 1 0 Median 7.3175 7.3968 NaN 1 1 Median 0.94196 0.80712 NaN 1 0 Median 117700000 46119000 71579000 35369000 17863000 17506000 10554000 4460300 6093500 49776000 20145000 29631000 833410 334860 498550 18531000 1980500 16551000 2635600 1335400 1300200 31432 2225 33051 164315;164316;164317;164318;164319;164320;164321 165337;165338;165339;165340;165341;165342;165343;165344 165337 8 SQLMNLIR TDQGIGGFGEEPGIKSQLMNLIRSVRTVMR GEEPGIKSQLMNLIRSVRTVMRGKKKS___ K S Q I R S 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 8 0 973.53789 A0A1W2PNR9;Q9Y5U9 A0A1W2PNR9 50 57 IER3IP1 Immediate early response 3-interacting protein 1 yes no 2 0.0034153 97.602 By matching By MS/MS By matching By matching 2 3 1 1 1.3725 1.2342 14.911 7 Median 1.1785 1.1071 15.37 2 0 Median 1.4327 1.1588 6.0154 3 0 Median 1.2401 1.2397 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5909 1.6147 NaN 1 0 Median NaN NaN NaN 0 0 Median 52068000 21697000 30371000 18882000 8590300 10292000 31491000 12283000 19207000 1274600 626270 648300 0 0 0 420260 196870 223390 0 0 0 31433 332 33052;33053 164322;164323;164324;164325;164326;164327;164328 165345;165346;165347;165348;165349;165350 165349 158 6 SQLNDISSFK CDCTEKLQNKFDFLRSQLNDISSFKNIYRY FDFLRSQLNDISSFKNIYRYAFDFARDKDQ R S Q F K N 0 0 1 1 0 1 0 0 0 1 1 1 0 1 0 3 0 0 0 0 0 0 10 0 1137.5666 Q9BTE7;E9PM04;H0YCN4 Q9BTE7 130 139 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 2 0.00041102 76.345 By matching By MS/MS By MS/MS 1 1 1 1.2473 1.1702 33.234 3 Plateau NaN NaN NaN 0 0 Median 0.71686 0.62274 NaN 1 0 Median 1.2473 1.1702 NaN 1 0 Median 1.2341 1.0234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63393000 26841000 36552000 0 0 0 1250500 596360 654100 54346000 22914000 31432000 7796900 3331400 4465500 0 0 0 0 0 0 31434 3826 33054 164329;164330;164331 165351;165352;165353;165354 165354 4 SQLNSQSVEITK SEQVAELKQELATLKSQLNSQSVEITKLQT TLKSQLNSQSVEITKLQTEKQELLQKTEAF K S Q T K L 0 0 1 0 0 2 1 0 0 1 1 1 0 0 0 3 1 0 0 1 0 0 12 0 1332.6885 O60763 O60763 799 810 USO1 General vesicular transport factor p115 yes yes 2 0.0005462 93.258 By MS/MS By MS/MS 1 1 2.2817 1.9255 NaN 1 Median NaN NaN NaN 0 0 Median 2.2817 1.9255 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17865000 3444300 14420000 0 0 0 17865000 3444300 14420000 0 0 0 0 0 0 0 0 0 0 0 0 31435 1630 33055 164332;164333 165355;165356 165356 2 SQLPAEGDAGAEWAAAVLK EGTSLTASVVADVRKSQLPAEGDAGAEWAA AEGDAGAEWAAAVLKQERAHEVGAQGGPPV K S Q L K Q 6 0 0 1 0 1 2 2 0 0 2 1 0 0 1 1 0 1 0 1 0 0 19 0 1882.9425 Q14676 Q14676 598 616 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 2.8549E-06 54.524 By MS/MS By matching 2 2 0.97202 0.97402 6.3511 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84956 0.93749 5.0048 2 0 Median 1.1346 1.0161 5.5801 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17013000 8826700 8186000 0 0 0 0 0 0 15875000 8278000 7597100 1137500 548630 588870 0 0 0 0 0 0 31436 2887 33056 164334;164335;164336;164337 165357;165358 165358 2 SQLPDLSGPHSYSPGR DRQSWPSPAVKGRFKSQLPDLSGPHSYSPG QLPDLSGPHSYSPGRNSVAGSNPAKPGLGS K S Q G R N 0 1 0 1 0 1 0 2 1 0 2 0 0 0 3 4 0 0 1 0 0 0 16 0 1696.8169 Q86XL3;F5H1D4 Q86XL3 884 899 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 yes no 3 0.057759 9.9211 By matching By MS/MS 1 2 0.87217 0.73845 10.98 3 Median 0.74214 0.71907 NaN 1 0 Median 0.962 0.80617 12.409 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19717000 10139000 9578000 12693000 6874800 5818500 7024100 3264600 3759500 0 0 0 0 0 0 0 0 0 0 0 0 31437 3301 33057 164338;164339;164340 165359 165359 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR QMTLDSKDSDIEQLRSQLQALHIGLDSSSI GPGDAEADDGFPESRLEGWLSLPVRNNTKK R S Q S R L 3 1 0 4 0 2 2 5 1 2 3 0 0 1 2 6 0 0 0 0 0 0 32 0 3212.4858 O75116;E9PF63;Q14DU5 O75116 1121 1152 ROCK2 Rho-associated protein kinase 2 yes no 3 0.00025504 26.826 By matching By MS/MS 1 1 0.56553 0.58852 12.332 2 Median 0.54166 0.53938 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59045 0.64215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3966600 2457800 1508800 2363700 1402700 961000 0 0 0 1602900 1055100 547850 0 0 0 0 0 0 0 0 0 31438 1644 33058 164341;164342 165360 165360 1 SQLQEQLAQLSR QEALEQQLPTLRHERSQLQEQLAQLSRQLS HERSQLQEQLAQLSRQLSGREQELEQARRE R S Q S R Q 1 1 0 0 0 4 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 12 0 1399.7419 Q5TZA2;B1AKD8 Q5TZA2 830 841 CROCC Rootletin yes no 2 5.7532E-06 116.77 By MS/MS By MS/MS 1 1 0.79557 0.85419 14.668 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70059 0.77004 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90343 0.94755 NaN 1 0 Median NaN NaN NaN 0 0 Median 10225000 5623500 4601700 0 0 0 0 0 0 6091200 3418400 2672900 0 0 0 4133900 2205100 1928800 0 0 0 31439 3107 33059 164343;164344 165361;165362;165363 165361 3 SQLQGPSSSEYWK GSGGSGGGSQPRAERSQLQGPSSSEYWKEW ERSQLQGPSSSEYWKEWPSAESPYSQSSEL R S Q W K E 0 0 0 0 0 2 1 1 0 0 1 1 0 0 1 4 0 1 1 0 0 0 13 0 1495.6943 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 823 835 no no 2 0.039215 26.043 By matching By MS/MS 1 1 0.79555 0.79893 11.762 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7811 0.86821 NaN 1 0 Median 0.81026 0.73517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8381600 5145700 3235900 0 0 0 0 0 0 6741100 4261500 2479600 1640500 884270 756270 0 0 0 0 0 0 31440 388 33060 164345;164346 165364 165364 1 SQLQISNNR SEADSDKNATILELRSQLQISNNRTLELQG TILELRSQLQISNNRTLELQGLINDLQRER R S Q N R T 0 1 2 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1058.5469 P15924 P15924 1754 1762 DSP Desmoplakin yes yes 2 0.002528 71.379 By MS/MS By MS/MS 1 2 0.93323 0.77732 15.004 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73405 0.76867 NaN 1 0 Median 1.063 0.88263 17.967 2 1 Median 4202200 2240100 1962100 0 0 0 0 0 0 0 0 0 0 0 0 2027900 1211700 816230 2174300 1028400 1145900 31441 2021 33061 164347;164348;164349 165365;165366 165365 2 SQLSCVVVDDIER AKCQAMKKIFDDAYKSQLSCVVVDDIERLL YKSQLSCVVVDDIERLLDYVPIGPRFSNLV K S Q E R L 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 2 0 0 0 3 0 0 13 0 1518.7348 I3L0N3;P46459;I3L2G1;K7EQD6 I3L0N3 590 602 NSF Vesicle-fusing ATPase yes no 3 0.062037 11.871 By matching By MS/MS 1 2 0.88414 0.97659 16.138 3 Median 1.3449 1.2915 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88414 0.97659 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 387970000 202640000 185330000 2985300 1521000 1464300 0 0 0 384990000 201120000 183870000 0 0 0 0 0 0 0 0 0 31442 1272 33062 164350;164351;164352 165367 165367 1 SQLSVFEVVPGTDQVDHAAAVK LDMCPEKERYMRETRSQLSVFEVVPGTDQV VVPGTDQVDHAAAVKEYSRSSADQEEPLPH R S Q V K E 3 0 0 2 0 2 1 1 1 0 1 1 0 1 1 2 1 0 0 5 0 0 22 0 2296.1699 O60318 O60318 653 674 MCM3AP Germinal-center associated nuclear protein yes yes 3 0.00023211 27.055 By MS/MS 1 0.84354 0.93628 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84354 0.93628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7435200 3871200 3564000 0 0 0 0 0 0 7435200 3871200 3564000 0 0 0 0 0 0 0 0 0 31443 1612 33063 164353 165368 165368 1 SQLTTIVLAAR VQALTLTFLAEWGDRSQLTTIVLAAREDPY WGDRSQLTTIVLAAREDPYGVAVGGTVGHC R S Q A R E 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1171.6925 Q9HC07;V9GY93;V9GYC8 Q9HC07 253 263 TMEM165 Transmembrane protein 165 yes no 2 0.00077434 62.823 By matching By MS/MS 2 1 1.5503 1.5506 10.071 3 Plateau 1.5476 1.5519 0.12043 2 0 Median 1.5523 1.3035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12242000 4916700 7325100 6752800 2757900 3994800 5489000 2158800 3330200 0 0 0 0 0 0 0 0 0 0 0 0 31444 4023 33064 164354;164355;164356 165369 165369 1 SQMDGLIPGVEPR CIHSPVVNELMRGIRSQMDGLIPGVEPREM IRSQMDGLIPGVEPREMAAMCLGLAHSLSR R S Q P R E 0 1 0 1 0 1 1 2 0 1 1 0 1 0 2 1 0 0 0 1 0 0 13 0 1397.6973 Q9Y2X3 Q9Y2X3 121 133 NOP58 Nucleolar protein 58 yes yes 2 8.6331E-07 133.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 6 0.8711 0.86927 27.688 12 Median 0.91349 0.89698 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82339 0.81851 4.8038 2 1 Median 1.0442 0.87288 51.124 3 0 Median 0.82519 0.83825 12.206 6 1 Median NaN NaN NaN 0 0 Median 127660000 68932000 58728000 3943300 1908400 2034900 0 0 0 45263000 24335000 20928000 2597000 1177500 1419500 75856000 41512000 34345000 0 0 0 31445 4396 33065;33066 164357;164358;164359;164360;164361;164362;164363;164364;164365;164366;164367;164368 165370;165371;165372;165373;165374;165375;165376;165377;165378;165379;165380;165381;165382;165383;165384;165385;165386;165387;165388;165389 165373 1963 19 SQMLAMNIEK PYQQVIEKTKSLSFRSQMLAMNIEKKLNQN SLSFRSQMLAMNIEKKLNQNSRSEAPNWAT R S Q E K K 1 0 1 0 0 1 1 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 10 0 1163.5679 P60228;E5RGA2;H0YAW4 P60228 415 424 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.00099871 89.08 By MS/MS By MS/MS By MS/MS 1 1 1 0.92874 0.84601 0.99586 2 Median 0.92333 0.85199 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93417 0.84008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35443000 18836000 16607000 23253000 12400000 10853000 0 0 0 0 0 0 12189000 6435500 5754000 0 0 0 0 0 0 31446 2524 33067 164369;164370;164371 165390;165391;165392 165390 3 SQMLLSR KLKNNKEYLEFRRERSQMLLSRRNQLLLEF YLEFRRERSQMLLSRRNQLLLEFSFWNEPQ R S Q S R R 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 2 0 0 0 0 0 0 7 0 833.44292 Q9BPW8;C9JDV8;H7C2U6 Q9BPW8 156 162 NIPSNAP1 Protein NipSnap homolog 1 yes no 2 0.012197 89.123 By MS/MS 1 1.0063 0.95371 NaN 1 Median 1.0063 0.95371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9796800 4481800 5314900 9796800 4481800 5314900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31447 3777 33068 164372 165393 165393 1 SQMTQEASDEAEDMKEAMNR QEAQEEIMKLKDTLKSQMTQEASDEAEDMK EASDEAEDMKEAMNRMIDELNKQVSELSQL K S Q N R M 3 1 1 2 0 2 4 0 0 0 0 1 3 0 0 2 1 0 0 0 0 0 20 1 2299.9355 Q9P0K7 Q9P0K7 617 636 RAI14 Ankycorbin yes yes 3 9.2264E-09 73.783 By MS/MS By matching By matching 1 1 1 0.93883 0.84798 10.233 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74864 0.84798 NaN 1 0 Median 1.0472 1.0064 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93883 0.83839 NaN 1 0 Median 5973400 3740800 2232500 0 0 0 0 0 0 5535000 3534700 2000300 360580 164880 195700 0 0 0 77778 41225 36553 31448 4204 33069 164373;164374;164375 165394 165394 1 SQNFDILQSAISK VTEAVFHSLLVIPARSQNFDILQSAISKHL ARSQNFDILQSAISKHLVGLTVIPDSTAGC R S Q S K H 1 0 1 1 0 2 0 0 0 2 1 1 0 1 0 3 0 0 0 0 0 0 13 0 1449.7464 Q9NXF1 Q9NXF1 747 759 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0018839 68.069 By MS/MS By MS/MS 1 2 0.78174 0.85988 33.927 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78174 0.85988 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0441 1.0743 44.404 2 2 Median NaN NaN NaN 0 0 Median 20364000 10284000 10080000 0 0 0 0 0 0 6093300 3537200 2556100 0 0 0 14270000 6746400 7523900 0 0 0 31449 4163 33070 164376;164377;164378 165395;165396;165397 165397 3 SQNIVTDSSSLSAEAIR EIQGHQPRIDDIFERSQNIVTDSSSLSAEA NIVTDSSSLSAEAIRQRLADLKQLWGLLIE R S Q I R Q 2 1 1 1 0 1 1 0 0 2 1 0 0 0 0 5 1 0 0 1 0 0 17 0 1776.8854 Q01082;A0A087WUZ3 Q01082 1548 1564 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 7.094E-15 166.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 7 3 2 4 1.0382 1.1785 28.643 22 Plateau 1.2522 1.1748 10.832 3 0 Plateau 1.1773 0.96116 8.0324 3 0 Median 0.8903 0.97074 46.036 7 2 Median 1.0759 0.95025 3.824 3 0 Plateau 1.0679 1.1056 2.4924 2 0 Median 1.0898 0.76598 9.5134 4 2 Linear 391360000 191150000 200200000 57469000 25472000 31998000 31315000 13433000 17882000 245060000 124790000 120270000 16698000 8102500 8595900 34104000 16131000 17973000 6711100 3225200 3485900 31450 2681 33071 164379;164380;164381;164382;164383;164384;164385;164386;164387;164388;164389;164390;164391;164392;164393;164394;164395;164396;164397;164398;164399;164400 165398;165399;165400;165401;165402;165403;165404;165405;165406;165407;165408;165409;165410;165411;165412;165413;165414;165415;165416;165417;165418;165419;165420;165421;165422;165423;165424;165425;165426;165427 165405 30 SQNKEDYAGLKEEFR ELFSKVPSLVGSFIRSQNKEDYAGLKEEFR SQNKEDYAGLKEEFRKEFTKLEEVLTNKKT R S Q F R K 1 1 1 1 0 1 3 1 0 0 1 2 0 1 0 1 0 0 1 0 0 0 15 2 1812.8642 P78417;Q5TA02 P78417 133 147 GSTO1 Glutathione S-transferase omega-1 yes no 3;4 1.7354E-10 108.34 By MS/MS By MS/MS 2 2 1.0832 0.98374 12.59 4 Median 1.0288 1.0954 14.353 2 0 Median 1.0832 0.93915 5.7023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43402000 20918000 22483000 30404000 14884000 15520000 12997000 6034500 6963000 0 0 0 0 0 0 0 0 0 0 0 0 31451 2646 33072 164401;164402;164403;164404 165428;165429;165430;165431;165432;165433 165431 5 SQNTELASTASLLR LERISRLEEKVKTLKSQNTELASTASLLRE KSQNTELASTASLLREQVAQLKQKVLSHVN K S Q L R E 2 1 1 0 0 1 1 0 0 0 3 0 0 0 0 3 2 0 0 0 0 0 14 0 1489.7736 P17535;U3KPR5 P17535 305 318 JUND Transcription factor jun-D yes no 2 6.1735E-08 119.76 By MS/MS By MS/MS By matching 1 1 1 0.75883 0.79929 15.254 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73552 0.79929 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86992 0.90398 NaN 1 1 Median 0.75883 0.66748 NaN 1 0 Median 13456000 7746700 5708900 0 0 0 0 0 0 7773700 4531600 3242100 0 0 0 5271700 2960500 2311200 410080 254550 155530 31452 2041 33073 164405;164406;164407 165434;165435;165436;165437 165434 4 SQNVMAAASIANIVK PLSVFGDRSTGETIRSQNVMAAASIANIVK SQNVMAAASIANIVKSSLGPVGLDKMLVDD R S Q V K S 4 0 2 0 0 1 0 0 0 2 0 1 1 0 0 2 0 0 0 2 0 0 15 0 1515.8079 P17987;E7ERF2;F5GZI8;F5GYL4 P17987 19 33 TCP1 T-complex protein 1 subunit alpha yes no 2;3 4.5325E-07 97.214 By MS/MS By MS/MS By MS/MS By matching By matching By matching 7 6 3 1 1 1 1.2038 1.105 24.344 19 Median 1.1484 1.1464 8.0537 7 0 Median 1.2186 1.0305 15.968 6 0 Median 1.1495 1.1733 7.2586 3 0 Median 1.2541 1.105 NaN 1 0 Median 2.6145 2.686 NaN 1 0 Median 1.1328 0.96677 NaN 1 0 Median 166710000 73269000 93442000 112590000 50105000 62483000 31277000 13650000 17627000 21102000 8923100 12178000 266570 114480 152090 1136000 328520 807450 341710 147130 194580 31453 2051 33074;33075 164408;164409;164410;164411;164412;164413;164414;164415;164416;164417;164418;164419;164420;164421;164422;164423;164424;164425;164426 165438;165439;165440;165441;165442;165443;165444;165445;165446;165447;165448;165449;165450 165439 814 13 SQPAILLLTAAR SQTFLEKHLNSSHPRSQPAILLLTAARDAE HPRSQPAILLLTAARDAEEALRCLSEQIAD R S Q A R D 3 1 0 0 0 1 0 0 0 1 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1252.7503 A0A0A0MSK5;Q5JTV8;H0Y4R4;J3KN66 J3KN66 421 432 TOR1AIP1 Torsin-1A-interacting protein 1 no no 2 0.00059974 70.977 By matching By matching By MS/MS By matching By MS/MS By matching 3 1 3 1 3 1 1.0121 0.99861 23.335 12 Median 1.3152 1.2891 39.919 3 0 Plateau 1.7515 1.5026 NaN 1 0 Median 1.0157 1.0123 5.892 3 0 Plateau 1.4144 1.2298 NaN 1 0 Median 0.92816 0.93132 9.6823 3 0 Median 1.4984 1.2941 NaN 1 0 Median 30890000 14772000 16118000 3719100 1684900 2034200 538190 184360 353840 17804000 8845500 8958900 548550 205060 343480 7512100 3547900 3964200 767560 304390 463170 31454 182;1302 33076 164427;164428;164429;164430;164431;164432;164433;164434;164435;164436;164437;164438 165451;165452;165453;165454 165452 4 SQPAPAEFR LRHWLRQNLPLSSGKSQPAPAEFRAQLDPA PLSSGKSQPAPAEFRAQLDPAFIKTYEDIK K S Q F R A 2 1 0 0 0 1 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 9 0 1001.493 P25325;B1AH49 P25325 147 155 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2 0.029283 36.557 By matching By MS/MS 2 2 1.0499 0.97617 28.061 4 Median 0.93135 0.92601 18.643 2 0 Median 1.3811 1.1787 37.848 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7745300 3691000 4054300 3364100 1800100 1563900 4381200 1890900 2490400 0 0 0 0 0 0 0 0 0 0 0 0 31455 2131 33077 164439;164440;164441;164442 165455 165455 1 SQPERDWVLNEFR MRRDGWPAMCIHGDKSQPERDWVLNEFRSG DKSQPERDWVLNEFRSGKAPILIATDVASR K S Q F R S 0 2 1 1 0 1 2 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 13 1 1674.8114 A0A1X7SBZ2;A0A1W2PQ51;Q92841;A0A0U1RQJ0 A0A1X7SBZ2 453 465 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2;3 0.0001993 80.979 By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 1 0.87573 0.90455 8.9222 10 Median 0.82287 0.84368 18.626 2 1 Median NaN NaN NaN 0 0 Median 0.8428 0.91028 4.4087 3 1 Median 1.0035 0.93549 11.568 2 0 Median 0.84267 0.91066 8.8142 2 0 Median 0.99432 0.89886 NaN 1 0 Median 102360000 54257000 48103000 10052000 5157300 4894700 0 0 0 64144000 34181000 29963000 316440 163420 153030 27045000 14364000 12681000 802040 390760 411290 31456 343 33078 164443;164444;164445;164446;164447;164448;164449;164450;164451;164452 165456;165457;165458;165459;165460;165461;165462;165463;165464 165458 9 SQPFTLQDLEK YCLNRMSMKTSSWTRSQPFTLQDLEKIMQS SWTRSQPFTLQDLEKIMQSPSPENLKFNAV R S Q E K I 0 0 0 1 0 2 1 0 0 0 2 1 0 1 1 1 1 0 0 0 0 0 11 0 1304.6612 Q9NU22 Q9NU22 2478 2488 MDN1 Midasin yes yes 2 0.00013886 85.29 By matching By MS/MS By MS/MS 1 1 1 0.86885 0.90788 5.4103 3 Median NaN NaN NaN 0 0 Median 1.0366 0.92068 NaN 1 0 Median 0.8529 0.90788 NaN 1 0 Median 0.86885 0.83313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51097000 26696000 24401000 0 0 0 3210500 1418700 1791800 46113000 24346000 21767000 1773800 931300 842470 0 0 0 0 0 0 31457 4112 33079 164453;164454;164455 165465;165466 165465 2 SQPFVDHVFTFTILDNR ELLIQIFSTPRYHPKSQPFVDHVFTFTILD PFVDHVFTFTILDNRIWFRNFQIIEEDAAL K S Q N R I 0 1 1 2 0 1 0 0 1 1 1 0 0 3 1 1 2 0 0 2 0 0 17 0 2035.0163 Q8TDN6 Q8TDN6 198 214 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 0.029443 14.472 By matching By MS/MS By MS/MS 1 1 1 0.94927 0.98248 10.815 3 Median NaN NaN NaN 0 0 Median 0.97937 0.83874 NaN 1 0 Median 0.94927 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91736 0.98248 NaN 1 0 Median NaN NaN NaN 0 0 Median 7356000 3948500 3407500 0 0 0 1985200 937580 1047600 2543100 1519200 1023800 0 0 0 2827700 1491700 1336100 0 0 0 31458 3473 33080 164456;164457;164458 165467;165468;165469 165468 3 SQPVSLPEELNR SSSDEEEEKEEIPPKSQPVSLPEELNRVRL PPKSQPVSLPEELNRVRLSRHKLERWCHMP K S Q N R V 0 1 1 0 0 1 2 0 0 0 2 0 0 0 2 2 0 0 0 1 0 0 12 0 1367.7045 Q92541 Q92541 350 361 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 2 0.0036071 68.893 By MS/MS 1 0.49719 0.48183 NaN 1 Median 0.49719 0.48183 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3624300 2490400 1134000 3624300 2490400 1134000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31459 3534 33081 164459 165470 165470 1 SQPVSQPLTYESGPDEVR SNIRAQPQRHFRVERSQPVSQPLTYESGPD VSQPLTYESGPDEVRAWLEAKAFSPRIVEN R S Q V R A 0 1 0 1 0 2 2 1 0 0 1 0 0 0 3 3 1 0 1 2 0 0 18 0 1987.9487 A0A3B3ISQ4;Q9H6S3 A0A3B3ISQ4 617 634 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 1.3205E-12 128.76 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 0.88007 0.77427 44.984 6 Median 0.54808 0.52297 NaN 1 0 Median 1.0181 0.89391 14.525 2 0 Median NaN NaN NaN 0 0 Median 0.87225 0.74318 NaN 1 0 Median 1.7456 1.8493 NaN 1 0 Median 0.71528 0.59337 NaN 1 0 Median 10462000 6051400 4410500 5705600 4028700 1676900 1193500 586480 607050 0 0 0 528500 264880 263620 2697700 982390 1715400 336630 189000 147630 31460 426 33082 164460;164461;164462;164463;164464;164465 165471;165472 165471 2 SQPVYIQYSNHR VTMVNYYTPITPHLRSQPVYIQYSNHRELK HLRSQPVYIQYSNHRELKTDNLPNQARAQA R S Q H R E 0 1 1 0 0 2 0 0 1 1 0 0 0 0 1 2 0 0 2 1 0 0 12 0 1490.7266 O95758;X6R242 O95758 123 134 PTBP3 Polypyrimidine tract-binding protein 3 yes no 2;3 1.3688E-06 100.93 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 0.97003 0.92491 23.093 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94826 0.93842 2.0514 2 0 Median 1.3916 1.1964 19.39 3 0 Median 0.71426 0.71805 30.244 3 0 Median 0.90487 0.77735 NaN 1 0 Median 60328000 30633000 29695000 0 0 0 0 0 0 23697000 12195000 11502000 19207000 9353200 9854100 15843000 8219500 7623400 1581400 865570 715820 31461 1791 33083 164466;164467;164468;164469;164470;164471;164472;164473;164474 165473;165474;165475;165476;165477;165478;165479;165480;165481;165482 165477 10 SQQERDWVLNEFK MRRDGWPAMGIHGDKSQQERDWVLNEFKHG DKSQQERDWVLNEFKHGKAPILIATDVASR K S Q F K H 0 1 1 1 0 2 2 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 13 1 1677.8111 J3KTA4;P17844 J3KTA4 376 388 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3 0.016729 24.935 By MS/MS By MS/MS By matching 1 2 1 1.2663 1.242 19.649 4 Median 1.7935 1.801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1669 1.242 4.2992 2 0 Median 1.2886 1.1849 NaN 1 0 Median 17255000 6758000 10497000 6207200 1958900 4248300 0 0 0 0 0 0 0 0 0 10518000 4581800 5935800 530190 217280 312910 31462 1334 33084 164475;164476;164477;164478 165483;165484;165485 165484 3 SQQLAPQYTYAQGGQQTWAPER TALAGDQPSVQPPLRSQQLAPQYTYAQGGQ YTYAQGGQQTWAPERPLVGVNGLDVTSLRP R S Q E R P 3 1 0 0 0 6 1 2 0 0 1 0 0 0 2 1 2 1 2 0 0 0 22 0 2507.1829 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1754 1775 FLNA Filamin-A no no 3 6.2598E-06 57.826 By MS/MS 1 0.71398 0.60203 NaN 1 Median NaN NaN NaN 0 0 Median 0.71398 0.60203 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4771700 3017900 1753900 0 0 0 4771700 3017900 1753900 0 0 0 0 0 0 0 0 0 0 0 0 31463 2088;3120 33085 164479 165486 165486 1 SQQLSALQEENVK FRKEIETLKQAAAQKSQQLSALQEENVKLA QKSQQLSALQEENVKLAEELGRSRDEVTSH K S Q V K L 1 0 1 0 0 3 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1472.7471 J3KP58;P30622;F5H0N7;A0A3B3ITA2 J3KP58 1047 1059 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 3.2754E-05 91.937 By MS/MS 1 1.0181 0.97992 NaN 1 Median 1.0181 0.97992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6385500 3127200 3258300 6385500 3127200 3258300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31464 1308 33086 164480 165487;165488 165488 2 SQQQDDIEELETK SGSGGGSAKEPQEERSQQQDDIEELETKAV ERSQQQDDIEELETKAVGMSNDGRFLKFDI R S Q T K A 0 0 0 2 0 3 3 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1561.7108 F5GWT4;Q9H4A3;F6UYG0 F5GWT4 198 210 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 9.0513E-07 100.69 By MS/MS By MS/MS 1 2 0.89862 0.86717 11.435 3 Plateau 0.89862 0.86717 NaN 1 0 Median 0.89996 0.78536 14.002 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14146000 7325800 6819700 7525200 3796200 3729000 6620300 3529600 3090700 0 0 0 0 0 0 0 0 0 0 0 0 31465 1001 33087 164481;164482;164483 165489;165490 165490 2 SQQQQLVESLHK GLVVLVFNKKETEIRSQQQQLVESLHKVLG EIRSQQQQLVESLHKVLGGNQTLTVNVEGT R S Q H K V 0 0 0 0 0 4 1 0 1 0 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1423.7419 Q7Z3B4 Q7Z3B4 204 215 NUP54 Nucleoporin p54 yes yes 2;3 8.7935E-06 128.81 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1.0381 0.93187 57.871 6 Median 1.6257 1.7599 NaN 1 0 Median 2.8947 3.2941 NaN 1 0 Median 0.86947 0.86285 14.589 2 0 Median 0.90383 0.77478 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0917 0.90777 NaN 1 0 Median 47352000 19156000 28196000 5431500 2007800 3423800 4196300 1178800 3017500 22796000 11518000 11278000 12276000 3231800 9044100 0 0 0 2651900 1219700 1432200 31466 3239 33088 164484;164485;164486;164487;164488;164489;164490;164491 165491;165492;165493;165494;165495;165496;165497 165496 7 SQQYEQAADAELAWVAETK TIGQRVDEIDAAIQRSQQYEQAADAELAWV EQAADAELAWVAETKRKLMALGPIRLEQDQ R S Q T K R 5 0 0 1 0 3 3 0 0 0 1 1 0 0 0 1 1 1 1 1 0 0 19 0 2136.9964 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5777 5795 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 7.5844E-06 50.563 By MS/MS 1 0.90429 0.89785 NaN 1 Median 0.90429 0.89785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3862700 1972600 1890200 3862700 1972600 1890200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31467 1220 33089 164492 165498;165499 165499 2 SQRPEESEPLEK TVLILEELRGDEGTRSQRPEESEPLEKKGK GTRSQRPEESEPLEKKGKYEGPKAKPLNTS R S Q E K K 0 1 0 0 0 1 4 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 12 1 1427.6892 Q5TFE4 Q5TFE4 345 356 NT5DC1 5-nucleotidase domain-containing protein 1 yes yes 2 0.018052 45.161 By matching By MS/MS 1 1 0.85801 0.8268 3.6819 2 Median 0.7919 0.80555 NaN 1 0 Median 0.92964 0.8486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1734300 893480 840780 898660 487940 410720 835600 405540 430060 0 0 0 0 0 0 0 0 0 0 0 0 31468 3105 33090 164493;164494 165500 165500 1 SQSAAVTPSSTTSSTR GSSGPPGSSSSSSSRSQSAAVTPSSTTSST QSAAVTPSSTTSSTRATPAPSAPAAASATS R S Q T R A 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 6 4 0 0 1 0 0 16 0 1566.7485 A0A087WX59;Q16186 A0A087WX59 172 187 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes no 2 0.0029561 36.303 By matching By MS/MS 2 1 1.0329 0.91156 12.872 3 Median 1.024 1.0137 15.02 2 0 Median 1.0329 0.89371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1212900 566560 646340 308330 149230 159100 904570 417330 487240 0 0 0 0 0 0 0 0 0 0 0 0 31469 65 33091 164495;164496;164497 165501;165502 165502 2 SQSAFDLK SLEDALAEAQRVNTKSQSAFDLKKKNLACE AQRVNTKSQSAFDLKKKNLACEESKRKELE K S Q L K K 1 0 0 1 0 1 0 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 894.4447 O95347 O95347 313 320 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.025516 42.599 By MS/MS 1 1.0216 0.87809 NaN 1 Median NaN NaN NaN 0 0 Median 1.0216 0.87809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4134000 1976800 2157200 0 0 0 4134000 1976800 2157200 0 0 0 0 0 0 0 0 0 0 0 0 31470 1766 33092 164498 165503 165503 1 SQSIDTPGVISR PQVYNDFLDIMKEFKSQSIDTPGVISRVSQ EFKSQSIDTPGVISRVSQLFKGHPDLIMGF K S Q S R V 0 1 0 1 0 1 0 1 0 2 0 0 0 0 1 3 1 0 0 1 0 0 12 0 1258.6517 Q96ST3;H3BP90 Q96ST3 156 167 SIN3A Paired amphipathic helix protein Sin3a yes no 2 0.0003417 137.98 By matching By MS/MS By MS/MS 1 1 1 1.0087 1.0282 10.844 3 Plateau NaN NaN NaN 0 0 Median 1.1617 0.99731 NaN 1 0 Median 0.93508 1.0282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0087 0.84079 NaN 1 0 Median 15254000 7804700 7449400 0 0 0 1887700 923970 963730 11821000 6032100 5788800 0 0 0 0 0 0 1545500 848660 696880 31471 3737 33093 164499;164500;164501 165504;165505;165506;165507 165505 4 SQSLPGADSLLAK RFRTATGAISAVFGRSQSLPGADSLLAKPI GRSQSLPGADSLLAKPIDKQHTDTVVNFLI R S Q A K P 2 0 0 1 0 1 0 1 0 0 3 1 0 0 1 3 0 0 0 0 0 0 13 0 1285.6878 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2056 2068 TRRAP Transformation/transcription domain-associated protein yes no 2 0.050311 42.001 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31472 991 33094 164502 165508 165508 1 SQSLPGADSLLAKPIDK RFRTATGAISAVFGRSQSLPGADSLLAKPI SLPGADSLLAKPIDKQHTDTVVNFLIRVAC R S Q D K Q 2 0 0 2 0 1 0 1 0 1 3 2 0 0 2 3 0 0 0 0 0 0 17 1 1738.9465 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2056 2072 TRRAP Transformation/transcription domain-associated protein yes no 3 0.0041826 40.014 By MS/MS 1 0.68733 0.77947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68733 0.77947 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9453700 6194600 3259100 0 0 0 0 0 0 9453700 6194600 3259100 0 0 0 0 0 0 0 0 0 31473 991 33095 164503 165509 165509 1 SQSSHSYDDSTLPLIDR WKKSDFQVNLNNASRSQSSHSYDDSTLPLI SSHSYDDSTLPLIDRNQKSDKKPDREEIQM R S Q D R N 0 1 0 3 0 1 0 0 1 1 2 0 0 0 1 5 1 0 1 0 0 0 17 0 1919.8861 C9JZR2;O60716;H0YC95 C9JZR2 859 875 CTNND1 Catenin delta-1 yes no 3 0.00042616 37.157 By matching By matching By MS/MS By matching 2 2 1 3 1.0475 0.95406 13.218 8 Median 0.97958 0.94762 3.2458 2 0 Median 1.2276 1.0978 14.24 2 0 Median 0.85072 0.90329 NaN 1 0 Median 1.0952 0.93875 14.605 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21743000 11276000 10467000 8301500 4548500 3753000 985070 448990 536090 10660000 5422800 5236800 1797400 856160 941200 0 0 0 0 0 0 31474 732 33096 164504;164505;164506;164507;164508;164509;164510;164511 165510;165511 165511 2 SQSSIVPEEEQAANKGEEK RQEEREKEAAEQAERSQSSIVPEEEQAANK IVPEEEQAANKGEEKKDDENIPMETEETHL R S Q E K K 2 0 1 0 0 2 5 1 0 1 0 2 0 0 1 3 0 0 0 1 0 0 19 1 2058.9706 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;A0A2R8YES3 Q969G3 314 332 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 3 4.6648E-07 58.672 By MS/MS By MS/MS 2 1 0.67332 0.70554 18.768 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66662 0.69676 1.7703 2 0 Median 0.96412 0.9637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31253000 16490000 14762000 0 0 0 0 0 0 20967000 11866000 9101000 10285000 4623900 5661400 0 0 0 0 0 0 31475 389 33097 164512;164513;164514 165512;165513;165514;165515;165516;165517;165518;165519 165518 8 SQSSSLLDMGNMSASDLDVADR SSLNKLSVQSSGNRRSQSSSLLDMGNMSAS DMGNMSASDLDVADRTKFDKIFEQVLSELE R S Q D R T 2 1 1 4 0 1 0 1 0 0 3 0 2 0 0 6 0 0 0 1 0 0 22 0 2298.0104 Q9NV70 Q9NV70 487 508 EXOC1 Exocyst complex component 1 yes yes 3 0.069051 13.455 By MS/MS 1 1.0328 1.0962 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0328 1.0962 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 763510 408760 354750 0 0 0 0 0 0 763510 408760 354750 0 0 0 0 0 0 0 0 0 31476 4125 33098 164515 165520 165520 1 SQSVFSGNPSIWLK LKALDVADLQKELDKSQSVFSGNPSIWLKD KSQSVFSGNPSIWLKDLASYLNYKLQAPLS K S Q L K D 0 0 1 0 0 1 0 1 0 1 1 1 0 1 1 4 0 1 0 1 0 0 14 0 1548.7936 Q6NUQ4;H7C0H8 Q6NUQ4 130 143 TMEM214 Transmembrane protein 214 yes no 2 0.0026705 41.704 By matching By matching By MS/MS By matching By matching 1 1 1 2 1 1.3957 1.2792 15.726 6 Median 1.2086 1.2179 NaN 1 0 Median 1.7509 1.5638 NaN 1 0 Median 0.99022 1.0036 NaN 1 0 Median 1.5257 1.3573 1.4427 2 0 Median NaN NaN NaN 0 0 Median 1.2863 1.1251 NaN 1 0 Median 14296000 7005900 7289800 1396800 677730 719040 1170100 458160 711950 11325000 5693200 5632200 303700 126770 176930 0 0 0 99841 50090 49752 31477 3145 33099 164516;164517;164518;164519;164520;164521 165521;165522 165521 2 SQTDQLVLIFAGK SSVQQFKEAISKRFKSQTDQLVLIFAGKIL FKSQTDQLVLIFAGKILKDQDTLIQHGIHD K S Q G K I 1 0 0 1 0 2 0 1 0 1 2 1 0 1 0 1 1 0 0 1 0 0 13 0 1418.7769 Q9UHD9 Q9UHD9 67 79 UBQLN2 Ubiquilin-2 yes yes 2 0.025142 28.204 By MS/MS 1 1.1544 1.1175 NaN 1 Median 1.1544 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1380600 622140 758470 1380600 622140 758470 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31478 4277 33100 164522 165523 165523 1 SQTEAVTFLANHDDSR QVLIDARDCPHISQRSQTEAVTFLANHDDS QTEAVTFLANHDDSRALYAIPGLDYVSHED R S Q S R A 2 1 1 2 0 1 1 0 1 0 1 0 0 1 0 2 2 0 0 1 0 0 16 0 1789.8231 Q9Y2S7;B4DEM9 Q9Y2S7 150 165 POLDIP2 Polymerase delta-interacting protein 2 yes no 3 0.00021167 42.338 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0704 0.98037 17.451 4 Median 0.89964 0.89366 NaN 1 0 Median 1.1714 0.99184 NaN 1 0 Median 0.97801 0.96903 NaN 1 0 Median 1.5527 1.332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18519000 8516500 10002000 7666200 3672600 3993600 1297200 483660 813550 5485200 2701400 2783800 4070300 1658800 2411500 0 0 0 0 0 0 31479 4390 33101 164523;164524;164525;164526 165524;165525;165526 165525 3 SQTGVGELTTQNTR YTELEYIHALTLLHRSQTGVGELTTQNTRL RSQTGVGELTTQNTRLQRLKEIICEQAAIK R S Q T R L 0 1 1 0 0 2 1 2 0 0 1 0 0 0 0 1 4 0 0 1 0 0 14 0 1490.7325 Q96A65 Q96A65 935 948 EXOC4 Exocyst complex component 4 yes yes 2 8.3241E-05 88.187 By MS/MS 1 1.5909 1.3604 NaN 1 Median NaN NaN NaN 0 0 Median 1.5909 1.3604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2576900 861340 1715500 0 0 0 2576900 861340 1715500 0 0 0 0 0 0 0 0 0 0 0 0 31480 3595 33102 164527 165527 165527 1 SQTGWPR ______________________________ MSVVPPNRSQTGWPRGVTQFGNKYIQQTKP R S Q P R G 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 7 0 830.4035 O43809 O43809 9 15 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 0.034356 47.849 By MS/MS By matching 1 1 1.036 0.92324 6.5777 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91744 0.88128 NaN 1 0 Median 1.1699 0.9672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8705700 4418700 4287000 0 0 0 0 0 0 7365900 3858200 3507800 1339800 560550 779220 0 0 0 0 0 0 31481 1592 33103 164528;164529 165528;165529 165529 2 SQTVLNQLR SQEELEDFPLPTVQRSQTVLNQLRYPSVLL LPTVQRSQTVLNQLRYPSVLLLVCQDSEQS R S Q L R Y 0 1 1 0 0 2 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 9 0 1057.588 A0A3B3ISQ4;Q9H6S3 A0A3B3ISQ4 123 131 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.0070414 61.999 By MS/MS By MS/MS 1 1 1.3618 1.1801 NaN 1 Median NaN NaN NaN 0 0 Median 1.3618 1.1801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2974700 1021400 1953300 0 0 0 2974700 1021400 1953300 0 0 0 0 0 0 0 0 0 0 0 0 31482 426 33104 164530;164531 165530;165531 165531 2 SQVDAQLLTVQK REEKDELGEQVLGLKSQVDAQLLTVQKLEE GLKSQVDAQLLTVQKLEEKERALQGSLGGV K S Q Q K L 1 0 0 1 0 3 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1328.73 O75150;H3BP71;A0A087WTK2 O75150 819 830 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 3.5722E-06 107.83 By matching By MS/MS By MS/MS 1 1 1 1.4869 1.274 9.0381 3 Median NaN NaN NaN 0 0 Median 1.5619 1.3696 NaN 1 0 Median 1.0711 1.1444 NaN 1 0 Median 1.4869 1.274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16392000 7177000 9214900 0 0 0 2332800 748260 1584500 11039000 5330500 5708900 3019700 1098200 1921400 0 0 0 0 0 0 31483 1648 33105 164532;164533;164534 165532;165533;165534 165534 3 SQVDKLTLTSR VNQGHCHPKIVNALKSQVDKLTLTSRAFYN NALKSQVDKLTLTSRAFYNNVLGEYEEYIT K S Q S R A 0 1 0 1 0 1 0 0 0 0 2 1 0 0 0 2 2 0 0 1 0 0 11 1 1246.6881 P04181 P04181 103 113 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2;3 5.1276E-05 105.98 By MS/MS By MS/MS By matching 6 2 1 1.2453 1.2587 24.672 9 Median 1.2566 1.2786 21.528 6 0 Median 1.3654 1.2745 21.006 2 0 Median NaN NaN NaN 0 0 Median 0.85872 0.76574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33262000 14451000 18811000 29332000 12680000 16652000 2568500 1055700 1512700 0 0 0 1362300 715980 646320 0 0 0 0 0 0 31484 1846 33106 164535;164536;164537;164538;164539;164540;164541;164542;164543 165535;165536;165537;165538;165539;165540;165541;165542;165543 165540 9 SQVEEELFSVR LQRLKAEATEAARQRSQVEEELFSVRVQME ARQRSQVEEELFSVRVQMEELSKLKARIEA R S Q V R V 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 11 0 1321.6514 Q15149 Q15149 2361 2371 PLEC Plectin yes yes 2 0.00011507 135.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 1.1292 1.0144 8.4087 9 Median 1.0593 1.0271 15.787 2 0 Median 1.402 1.1222 NaN 1 0 Median 0.94084 1.0144 0.0020306 2 0 Median 1.1611 1.0107 NaN 1 0 Median 0.99779 1.0401 15.353 2 0 Median 1.2451 1.0354 NaN 1 0 Median 133880000 59455000 74429000 63066000 27625000 35441000 18782000 7772900 11009000 32984000 15719000 17264000 1622100 770210 851880 14828000 6432100 8396100 2603000 1136300 1466700 31485 2933 33107 164544;164545;164546;164547;164548;164549;164550;164551;164552 165544;165545;165546;165547;165548;165549;165550;165551;165552;165553;165554;165555;165556 165545 13 SQVEPADYKADEDPALFQSVK TWKTVEIVHIDIADRSQVEPADYKADEDPA DYKADEDPALFQSVKTKRGPLGPNWKKELA R S Q V K T 3 0 0 3 0 2 2 0 0 0 1 2 0 1 2 2 0 0 1 2 0 0 21 1 2336.1172 P48739;A0A0A0MSW4;B3KYB6 P48739 147 167 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 3 3.1848E-09 58.914 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.68036 0.61669 19.699 4 Median 0.61768 0.59993 NaN 1 0 Median 0.70335 0.63392 NaN 1 0 Median 0.84836 0.88828 NaN 1 0 Median 0.65813 0.57789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21148000 12105000 9043700 14220000 8326400 5893700 1378800 860370 518470 4838200 2510100 2328000 711250 407760 303490 0 0 0 0 0 0 31486 2368 33108 164553;164554;164555;164556 165557;165558;165559;165560 165558 4 SQVEQQQLITVEK EGKEMCVLRMTRARRSQVEQQQLITVEKAL RRSQVEQQQLITVEKALAILSQPTPSLVVD R S Q E K A 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1528.8097 Q6PL18;A0A0B4J211 Q6PL18 1302 1314 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2 0.00015076 83.182 By MS/MS By matching 3 1 0.89202 0.92459 30.891 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75767 0.79293 29.56 3 0 Median 1.4117 1.1752 NaN 1 0 Median 13227000 7552200 5674700 0 0 0 0 0 0 0 0 0 0 0 0 12339000 7132000 5207500 887390 420200 467190 31487 3177 33109 164557;164558;164559;164560 165561 165561 1 SQVFSTAADGQTQVEIK FTKLINRNTTIPTKKSQVFSTAADGQTQVE VFSTAADGQTQVEIKVCQGEREMAGDNKLL K S Q I K V 2 0 0 1 0 3 1 1 0 1 0 1 0 1 0 2 2 0 0 2 0 0 17 0 1807.8952 P38646 P38646 469 485 HSPA9 Stress-70 protein, mitochondrial yes yes 2 2.1693E-14 153.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1 1 1.3546 1.1938 17.226 10 Median 1.2218 1.1259 4.1217 3 0 Median 1.3992 1.1871 1.1296 2 0 Median 1.4884 1.534 38.019 2 1 Median 1.3992 1.1911 NaN 1 0 Median 1.2393 1.2816 NaN 1 1 Median 1.5922 1.3304 NaN 1 0 Median 177840000 75887000 101950000 128100000 55078000 73025000 16312000 6803900 9507700 26055000 11130000 14925000 3487600 1425100 2062500 3413400 1284300 2129100 470740 166090 304650 31488 2277 33110 164561;164562;164563;164564;164565;164566;164567;164568;164569;164570 165562;165563;165564;165565;165566;165567;165568;165569;165570;165571;165572;165573;165574;165575;165576;165577;165578;165579;165580;165581 165575 20 SQVMDEATALQLR FRGLRKQITMEELVRSQVMDEATALQLREG VRSQVMDEATALQLREGLTSIEEVTKNLQK R S Q L R E 2 1 0 1 0 2 1 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1460.7293 Q15149;H0YDN1 Q15149 4037 4049 PLEC Plectin yes no 2 4.9015E-11 133.81 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0164 0.94904 78.305 4 Median NaN NaN NaN 0 0 Median 0.96207 0.79509 NaN 1 0 Median 1.0737 1.1328 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.4714 1.5444 NaN 1 1 Median 0.25039 0.25689 NaN 1 0 Median 22816000 10622000 12193000 0 0 0 7407500 3341100 4066300 11201000 5310200 5891000 0 0 0 3968400 1780900 2187500 238570 189950 48616 31489 2933 33111 164571;164572;164573;164574 165582;165583;165584 165582 3 SQVMNVIGSER ILSETISPLRPQRPKSQVMNVIGSERRFSV QRPKSQVMNVIGSERRFSVSPSSPSSQQTP K S Q E R R 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 2 0 0 0 2 0 0 11 0 1218.6027 A0A096LNH6;Q14185 A0A096LNH6 1764 1774 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.00041805 70.1 By MS/MS 1 1.0007 0.87802 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0007 0.87802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1729600 794140 935490 0 0 0 0 0 0 0 0 0 1729600 794140 935490 0 0 0 0 0 0 31490 140 33112 164575 165585 165585 1 SQVVAGTNYFIK KENKKFPVFKAVSFKSQVVAGTNYFIKVHV SFKSQVVAGTNYFIKVHVGDEDFVHLRVFQ K S Q I K V 1 0 1 0 0 1 0 1 0 1 0 1 0 1 0 1 1 0 1 2 0 0 12 0 1325.698 P04080;A0A1W2PS52 P04080 45 56 CSTB Cystatin-B yes no 2 0.00028532 98.943 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.82497 0.75721 34.936 4 Median 0.94512 0.83929 NaN 1 1 Median 1.2717 1.0501 NaN 1 0 Median 0.72009 0.68316 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56712 0.46155 NaN 1 0 Median 585660000 282490000 303170000 546890000 261390000 285500000 2305700 1016400 1289300 36092000 19894000 16197000 0 0 0 0 0 0 376570 187140 189440 31491 1843 33113 164576;164577;164578;164579 165586;165587;165588 165586 3 SQWSLLSEK EHPDASGEEIEELLRSQWSLLSEKQRARYN IEELLRSQWSLLSEKQRARYNTKFALVAPV R S Q E K Q 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 3 0 1 0 0 0 0 9 0 1076.5502 O96028;H0Y9L4 O96028 489 497 WHSC1 Histone-lysine N-methyltransferase NSD2 yes no 2 0.013728 45.161 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.88015 0.83263 32.275 5 Median 0.7534 0.71792 NaN 1 0 Median 1.7584 1.5387 NaN 1 0 Median 0.88015 0.93361 NaN 1 0 Median 0.93746 0.83263 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80975 0.69009 NaN 1 0 Median 9862800 4601300 5261400 3523900 2113800 1410100 1033800 424310 609530 4626200 1647700 2978500 213490 127090 86407 0 0 0 465360 288440 176920 31492 1810 33114 164580;164581;164582;164583;164584 165589 165589 1 SQWSPALTISK PNINSNGSICLDILRSQWSPALTISKVLLS DILRSQWSPALTISKVLLSICSLLCDPNPD R S Q S K V 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 3 1 1 0 0 0 0 11 0 1216.6452 P62837;A0A0A0MQU3;D6RAW0;D6RFM0;D6RAH7;H9KV45;P61077;A0A087WY85 P61077 91 101 UBE2D2;UBE2D3 Ubiquitin-conjugating enzyme E2 D2;Ubiquitin-conjugating enzyme E2 D3 no no 2 0.00016144 97.597 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 2 1.1394 1.0003 45.008 9 Median 1.1678 1.0729 6.827 2 0 Median 1.1977 0.99841 7.7562 3 0 Plateau 1.1881 1.118 NaN 1 0 Median 0.91426 0.7496 18.67 2 0 Median 3.1199 3.2976 NaN 1 0 Median NaN NaN NaN 0 0 Median 445690000 209570000 236120000 178350000 84050000 94297000 144760000 67222000 77539000 102760000 48096000 54664000 17368000 8341900 9026000 2452900 1858400 594510 0 0 0 31493 2599;2541 33115 164585;164586;164587;164588;164589;164590;164591;164592;164593;164594 165590;165591;165592;165593;165594;165595;165596;165597;165598;165599;165600;165601;165602 165596 13 SQWSPALTVSK PNINSNGSICLDILRSQWSPALTVSKVLLS DILRSQWSPALTVSKVLLSICSLLCDPNPD R S Q S K V 1 0 0 0 0 1 0 0 0 0 1 1 0 0 1 3 1 1 0 1 0 0 11 0 1202.6295 A0A087WW00;C9J9H9;Q9Y2X8;P51668 A0A087WW00 53 63 UBE2D1;UBE2D4 Ubiquitin-conjugating enzyme E2 D4;Ubiquitin-conjugating enzyme E2 D1 yes no 2 0.0017421 57.348 By MS/MS By MS/MS By MS/MS 1 1 1 1.027 0.84708 7.4128 3 Plateau 0.97146 0.91704 NaN 1 0 Median 1.0295 0.84708 NaN 1 0 Median 0.81955 0.79078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32608000 14592000 18016000 11976000 4409500 7566200 15161000 7495700 7665100 5471800 2687100 2784700 0 0 0 0 0 0 0 0 0 31494 48 33116 164595;164596;164597 165603;165604;165605;165606 165605 4 SQWYELQQLDSK ______________________________ ______________________________ M S Q S K F 0 0 0 1 0 3 1 0 0 0 2 1 0 0 0 2 0 1 1 0 0 0 12 0 1523.7256 P42224;E7EPD2;D2KFR9;E7ENM1;E9PH66 P42224 2 13 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes no 2 0.00097634 84.658 By MS/MS 1 0.94637 0.90314 NaN 1 Median 0.94637 0.90314 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3967100 2144100 1823000 3967100 2144100 1823000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31495 2308 33117 164598 165607 165607 1 SQYEQLAEQNR AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NNMRSQYEQLAEQNRKDAEAWFNEKSKELT R S Q N R K 1 1 1 0 0 3 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1364.6321 P13645;CON__P13645 P13645 323 333 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.3334E-167 274.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 7 9 16 7 9 0.084885 0.067716 100.03 25 Median 0.1258 0.12157 58.017 5 5 Median 0.054419 0.045459 44.306 3 3 Median 0.11198 0.11585 113.61 6 6 Median 0.05489 0.047465 105.3 6 6 Median 0.019685 0.019882 93.806 2 2 Median 0.084885 0.066615 129.17 3 3 Median 509010000 501700000 7309300 59681000 58042000 1638700 78439000 77443000 995690 40018000 38519000 1499400 195310000 193890000 1420500 59251000 58772000 479330 76311000 75035000 1275700 + 31496 756 33118 164599;164600;164601;164602;164603;164604;164605;164606;164607;164608;164609;164610;164611;164612;164613;164614;164615;164616;164617;164618;164619;164620;164621;164622;164623;164624;164625;164626;164627;164628;164629;164630;164631;164632;164633;164634;164635;164636;164637;164638;164639;164640;164641;164642;164643;164644;164645;164646;164647;164648;164649;164650;164651;164652;164653;164654;164655;164656;164657 165608;165609;165610;165611;165612;165613;165614;165615;165616;165617;165618;165619;165620;165621;165622;165623;165624;165625;165626;165627;165628;165629;165630;165631;165632;165633;165634;165635;165636;165637;165638;165639;165640;165641;165642;165643;165644;165645;165646;165647;165648;165649;165650;165651;165652;165653;165654;165655;165656;165657;165658;165659;165660;165661;165662;165663;165664;165665;165666;165667 165645 60 SQYEQLAEQNRK AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NMRSQYEQLAEQNRKDAEAWFNEKSKELTT R S Q R K D 1 1 1 0 0 3 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 12 1 1492.727 P13645;CON__P13645 P13645 323 334 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 7.2495E-150 270.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 18 20 19 21 10 13 0.02789 0.026846 126.26 61 Median 0.031026 0.03115 128.38 10 10 Median 0.029439 0.026846 147.17 17 17 Median 0.044025 0.049926 144.29 9 9 Median 0.017815 0.016855 109.82 14 14 Median 0.017887 0.021104 109.22 3 3 Median 0.025879 0.022633 72.715 8 8 Median 1364800000 1311100000 53663000 266270000 251390000 14882000 306120000 278820000 27300000 128020000 125120000 2900700 316220000 311080000 5144600 161260000 159010000 2253400 186910000 185730000 1181800 + 31497 756 33119 164658;164659;164660;164661;164662;164663;164664;164665;164666;164667;164668;164669;164670;164671;164672;164673;164674;164675;164676;164677;164678;164679;164680;164681;164682;164683;164684;164685;164686;164687;164688;164689;164690;164691;164692;164693;164694;164695;164696;164697;164698;164699;164700;164701;164702;164703;164704;164705;164706;164707;164708;164709;164710;164711;164712;164713;164714;164715;164716;164717;164718;164719;164720;164721;164722;164723;164724;164725;164726;164727;164728;164729;164730;164731;164732;164733;164734;164735;164736;164737;164738;164739;164740;164741;164742;164743;164744;164745;164746;164747;164748;164749;164750;164751;164752;164753;164754;164755;164756;164757;164758 165668;165669;165670;165671;165672;165673;165674;165675;165676;165677;165678;165679;165680;165681;165682;165683;165684;165685;165686;165687;165688;165689;165690;165691;165692;165693;165694;165695;165696;165697;165698;165699;165700;165701;165702;165703;165704;165705;165706;165707;165708;165709;165710;165711;165712;165713;165714;165715;165716;165717;165718;165719;165720;165721;165722;165723;165724;165725;165726;165727;165728;165729;165730;165731;165732;165733;165734;165735;165736;165737;165738;165739;165740;165741;165742;165743;165744;165745;165746;165747;165748;165749;165750;165751;165752;165753;165754;165755;165756;165757;165758;165759;165760;165761;165762;165763;165764;165765;165766;165767;165768;165769;165770;165771;165772;165773 165772 106 SQYEVMAEQNR SAPGTDLAKILSDMRSQYEVMAEQNRKDAE SDMRSQYEVMAEQNRKDAEAWFTSRTEELN R S Q N R K 1 1 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 11 0 1353.5983 CON__P08727;P08727;K7EMS3 CON__P08727 254 264 KRT19 Keratin, type I cytoskeletal 19 yes no 2 5.5908E-05 153.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 3 1.3704 1.1819 17.659 10 Median 0.98229 0.97804 NaN 1 0 Median 1.8722 1.6406 1.5866 2 1 Median 0.92449 1.0149 NaN 1 0 Median 1.4358 1.2312 NaN 1 0 Median 1.1333 1.1453 4.9854 2 0 Median 1.3853 1.19 4.2643 3 0 Plateau 102350000 48329000 54018000 9940900 5191600 4749300 12333000 4229800 8103000 50993000 26496000 24497000 4153400 1712700 2440600 12955000 6010800 6944100 11973000 4688000 7284900 + 31498 752 33120;33121 164759;164760;164761;164762;164763;164764;164765;164766;164767;164768 165774;165775;165776;165777;165778;165779;165780;165781;165782;165783;165784;165785;165786;165787;165788 165782 278 15 SQYEVMAEQNRK SAPGTDLAKILSDMRSQYEVMAEQNRKDAE DMRSQYEVMAEQNRKDAEAWFTSRTEELNR R S Q R K D 1 1 1 0 0 2 2 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 12 1 1481.6933 CON__P08727;P08727;K7EMS3 CON__P08727 254 265 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 0.00044065 70.977 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 2 1.2355 1.2263 33.426 10 Median 0.99302 1.0624 NaN 1 0 Median 1.7196 1.6104 NaN 1 1 Median 1.0458 1.188 8.8349 2 2 Median 1.9796 1.7311 75.867 2 1 Median 1.1767 1.2521 12.614 2 2 Median 1.6941 1.5294 35.597 2 1 Median 36932000 15415000 21518000 1433000 698350 734660 2464900 1141500 1323300 10603000 4672200 5930600 4441800 1222700 3219100 14579000 6504500 8074200 3411400 1175500 2235900 + 31499 752 33122 164769;164770;164771;164772;164773;164774;164775;164776;164777;164778;164779 165789;165790;165791;165792;165793;165794;165795;165796;165797;165798;165799;165800 165797 12 SQYNFIADVVEK AVLAAVPSPPPASPRSQYNFIADVVEKTAP SPRSQYNFIADVVEKTAPAVVYIEILDRHP R S Q E K T 1 0 1 1 0 1 1 0 0 1 0 1 0 1 0 1 0 0 1 2 0 0 12 0 1411.6983 A0A0C4DG44;O43464 A0A0C4DG44 132 143 HTRA2 Serine protease HTRA2, mitochondrial yes no 2 0.0018177 79.693 By MS/MS By matching By matching By matching 2 1 1 1 1.1445 1.0727 11.875 5 Median 1.0784 1.0003 3.4097 2 1 Median 1.5244 1.2774 NaN 1 0 Median 1.1445 1.0727 NaN 1 0 Median 1.5065 1.2425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107660000 49740000 57919000 86168000 40356000 45811000 8412200 3428000 4984200 12452000 5715700 6736100 628020 240100 387920 0 0 0 0 0 0 31500 234 33123 164780;164781;164782;164783;164784 165801;165802;165803 165801 3 SQYPEIIFLGTGSAIPMK YRRSAQDGPAPAEKRSQYPEIIFLGTGSAI PEIIFLGTGSAIPMKIRNVSATLVNISPDT R S Q M K I 1 0 0 0 0 1 1 2 0 3 1 1 1 1 2 2 1 0 1 0 0 0 18 0 1951.0125 Q9BQ52;G5E9D5;E7ES68;H7C2I4 Q9BQ52 478 495 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.046516 20.953 By matching By MS/MS 1 1 0.74094 0.69231 10.64 2 Median 0.76047 0.74641 NaN 1 0 Median 0.72191 0.64213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3724500 2077800 1646700 2282900 1290000 992900 1441600 787790 653790 0 0 0 0 0 0 0 0 0 0 0 0 31501 3782 33124 164785;164786 165804 165804 1 SRAEAALEEESR AYHNSPAYLAYINAKSRAEAALEEESRQRQ NAKSRAEAALEEESRQRQSRMEKGEPYMSI K S R S R Q 3 2 0 0 0 0 4 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 1 1346.6426 Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3;J3QR61;A0A2R8YD78;J3KT85 Q969G3 147 158 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes no 2;3 3.0585E-05 119.39 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 1.2061 1.0952 16.354 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86375 0.93406 5.6282 4 0 Median 1.38 1.2873 11.04 5 1 Median 1.1263 1.2096 16.879 2 0 Median 1.2 1.0609 4.5026 2 1 Median 46056000 22758000 23298000 0 0 0 0 0 0 23698000 12875000 10823000 9082600 3935800 5146700 8438600 3764200 4674400 4836400 2182900 2653500 31502 389 33125 164787;164788;164789;164790;164791;164792;164793;164794;164795;164796;164797;164798;164799 165805;165806;165807;165808;165809;165810;165811;165812;165813;165814;165815;165816;165817;165818;165819;165820;165821 165820 17 SRAEAESMYQIK IIAEVKAQYEDIANRSRAEAESMYQIKYEE ANRSRAEAESMYQIKYEELQSLAGKHGDDL R S R I K Y 2 1 0 0 0 1 2 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 12 1 1411.6766 P05787;CON__P05787 P05787 274 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.6522E-06 158.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 10 11 7 9 15 1.31 1.2591 25.027 58 Median 1.4784 1.5251 39.594 6 0 Median 1.4378 1.3107 16.369 10 0 Median 1.2478 1.3148 20.402 11 0 Median 1.2339 1.1765 14.869 7 0 Median 1.4409 1.5709 9.9324 9 0 Median 1.1422 1.012 12.898 15 0 Median 1032800000 454650000 578200000 119100000 54440000 64657000 84624000 33545000 51079000 182530000 82087000 100450000 152370000 66710000 85656000 186890000 79539000 107350000 307340000 138330000 169020000 + 31503 750 33126;33127 164800;164801;164802;164803;164804;164805;164806;164807;164808;164809;164810;164811;164812;164813;164814;164815;164816;164817;164818;164819;164820;164821;164822;164823;164824;164825;164826;164827;164828;164829;164830;164831;164832;164833;164834;164835;164836;164837;164838;164839;164840;164841;164842;164843;164844;164845;164846;164847;164848;164849;164850;164851;164852;164853;164854;164855;164856;164857 165822;165823;165824;165825;165826;165827;165828;165829;165830;165831;165832;165833;165834;165835;165836;165837;165838;165839;165840;165841;165842;165843;165844;165845;165846;165847;165848;165849;165850;165851;165852;165853;165854;165855;165856;165857;165858;165859;165860;165861;165862;165863;165864;165865;165866;165867;165868;165869;165870;165871;165872;165873;165874;165875;165876;165877;165878;165879;165880;165881;165882;165883;165884;165885 165839 268 64 SRAEAESMYQIKYEELQSLAGK IIAEVKAQYEDIANRSRAEAESMYQIKYEE MYQIKYEELQSLAGKHGDDLRRTKTEISEM R S R G K H 3 1 0 0 0 2 4 1 0 1 2 2 1 0 0 3 0 0 2 0 0 0 22 2 2530.2374 P05787;CON__P05787 P05787 274 295 KRT8 Keratin, type II cytoskeletal 8 yes no 3;4 1.4554E-15 97.5 By MS/MS By matching By matching By MS/MS By matching 3 1 2 8 3 1.2935 1.4151 29.968 17 Median 1.1044 1.234 6.8458 3 0 Plateau 0.93023 0.88568 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.362 1.4869 7.2944 2 0 Median 1.4008 1.6024 27.819 8 0 Median 1.1727 1.0924 25.045 3 0 Median 195360000 81838000 113520000 26623000 12537000 14086000 281540 152990 128550 0 0 0 1341900 619240 722640 158950000 64756000 94194000 8165900 3772800 4393200 + 31504 750 33128;33129 164858;164859;164860;164861;164862;164863;164864;164865;164866;164867;164868;164869;164870;164871;164872;164873;164874 165886;165887;165888;165889;165890;165891;165892;165893;165894;165895 165891 268 10 SRAEAESWYQTK IIAEVKAQYEEIAQRSRAEAESWYQTKYEE AQRSRAEAESWYQTKYEELQVTAGRHGDDL R S R T K Y 2 1 0 0 0 1 2 0 0 0 0 1 0 0 0 2 1 1 1 0 0 0 12 1 1454.679 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 348 359 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 2.8322E-05 110.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.068042 0.078435 27.508 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.068042 0.078728 NaN 1 1 Median 0.049112 0.045746 NaN 1 1 Median 0.062403 0.064832 NaN 1 1 Median NaN NaN NaN 0 0 Median 11621000 11361000 259510 1581500 1581500 0 0 0 0 3886300 3754100 132120 2949300 2928900 20398 2408100 2301100 106990 795440 795440 0 + 31505 741;748;766 33130 164875;164876;164877;164878;164879;164880 165896;165897;165898;165899;165900;165901 165900 6 SRAEMYDDVHSDGR TLQFKAQDLLRAVPRSRAEMYDDVHSDGRY RSRAEMYDDVHSDGRYSLSGSVAHSRDAGR R S R G R Y 1 2 0 3 0 0 1 1 1 0 0 0 1 0 0 2 0 0 1 1 0 0 14 1 1636.69 M0R2Z9;Q8IX01;M0R3F6;M0R065;M0R216 M0R2Z9 63 76 SUGP2 SURP and G-patch domain-containing protein 2 yes no 3 0.037049 18.138 By MS/MS By matching 1 2 1.0458 1.1162 24.484 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2356 1.5028 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94338 1.0159 13.315 2 0 Median NaN NaN NaN 0 0 Median 3866300 1937800 1928500 0 0 0 0 0 0 869580 378190 491400 0 0 0 2996700 1559600 1437100 0 0 0 31506 1437 33131 164881;164882;164883 165902 165902 1 SRDESASETSTPSEHSAAPSPQVEVR QNSQMIVKRFSFSQRSRDESASETSTPSEH PSEHSAAPSPQVEVRTLEGQLVQHPGPGIP R S R V R T 3 2 0 1 0 1 4 0 1 0 0 0 0 0 3 7 2 0 0 2 0 0 26 1 2740.2536 Q92614;A0A0D9SFK2 Q92614 145 170 MYO18A Unconventional myosin-XVIIIa yes no 4 0.011496 17.716 By matching By MS/MS 1 1 0.78319 0.83767 29.824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81879 1.0343 NaN 1 0 Median 0.74915 0.6784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305600 1435600 1870000 0 0 0 0 0 0 2242900 863140 1379700 1062700 572410 490290 0 0 0 0 0 0 31507 267 33132 164884;164885 165903 165903 1 SRDLLVQQASQCLSK QMRMKGLEEPEMDPKSRDLLVQQASQCLSK SRDLLVQQASQCLSKLVQIASRTKRNFILD K S R S K L 1 1 0 1 1 3 0 0 0 0 3 1 0 0 0 3 0 0 0 1 0 0 15 1 1731.8938 Q1KMD3;H3BQZ7 Q1KMD3 507 521 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.00010256 58.09 By MS/MS 3 1.001 1.0378 53.602 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.001 1.0378 53.602 3 0 Median NaN NaN NaN 0 0 Median 24628000 13555000 11074000 0 0 0 0 0 0 0 0 0 0 0 0 24628000 13555000 11074000 0 0 0 31508 3002 33133 164886;164887;164888 165904;165905;165906 165906 3 SRDPPASASQVTGIR PRTPRRSKSDGEAKRSRDPPASASQVTGIR SRDPPASASQVTGIRAEPSPSPRITRKSTR R S R I R A 2 2 0 1 0 1 0 1 0 1 0 0 0 0 2 3 1 0 0 1 0 0 15 1 1540.7958 K7ELB1;K7ER10 K7ELB1 29 43 DNMT1 yes no 3 7.0297E-08 92.773 By MS/MS 1 1.1136 1.4068 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1136 1.4068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8769000 3072600 5696400 0 0 0 0 0 0 8769000 3072600 5696400 0 0 0 0 0 0 0 0 0 31509 1375 33134 164889 165907 165907 1 SREDAGDNDDTEGAIGVR FARMELREHGEKKKRSREDAGDNDDTEGAI DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R S R V R N 2 2 1 4 0 0 2 3 0 1 0 0 0 0 0 1 1 0 0 1 0 0 18 1 1875.8195 Q9H0S4 Q9H0S4 424 441 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 3 3.537E-15 111.33 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1 1.044 0.97504 7.182 7 Median 1.0877 1.0984 NaN 1 0 Median 1.0619 0.95767 NaN 1 0 Median 0.97453 1.0551 NaN 1 0 Median 1.0153 0.94057 2.9764 2 0 Median 1.019 1.0978 NaN 1 0 Median 1.1029 0.97504 NaN 1 0 Median 34288000 15675000 18614000 1016100 549020 467030 3592300 1751300 1840900 9195200 4246900 4948300 11910000 5134600 6775600 6182700 2799200 3383400 2392000 1193700 1198300 31510 3928 33135 164890;164891;164892;164893;164894;164895;164896 165908;165909;165910;165911;165912;165913;165914;165915;165916;165917;165918;165919 165909 12 SREDEDALEQAR HAEKEKERLRQERMRSREDEDALEQARRAH RMRSREDEDALEQARRAHEEARRRQEQQQQ R S R A R R 2 2 0 2 0 1 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 12 1 1417.6433 O60885 O60885 1262 1273 BRD4 Bromodomain-containing protein 4 yes yes 2;3 3.5343E-05 142.07 By MS/MS By MS/MS 2 2 0.9334 0.99832 24.325 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95511 1.2065 10.168 2 0 Median 0.90105 0.81595 11.904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21001000 10616000 10385000 0 0 0 0 0 0 18654000 9325000 9329400 2346800 1291200 1055600 0 0 0 0 0 0 31511 1638 33136 164897;164898;164899;164900 165920;165921;165922;165923;165924;165925 165921 6 SREDMIDIK RVAAALPGMESTQDRSREDMIDIKLEKPQE ESTQDRSREDMIDIKLEKPQEQPVSEGGCS R S R I K L 0 1 0 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 0 0 0 9 1 1105.5438 P20340;F5H3K7 P20340 184 192 RAB6A Ras-related protein Rab-6A yes no 2 0.033303 52.725 By MS/MS By MS/MS By matching 1 1 1 1.068 1.0229 8.1334 3 Median 1.068 1.1135 NaN 1 0 Median 1.0256 0.94638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2274 1.0229 NaN 1 0 Median 35468000 17898000 17571000 21468000 10807000 10661000 12400000 6453100 5946700 0 0 0 0 0 0 0 0 0 1600600 637780 962860 31512 2079 33137 164901;164902;164903 165926;165927 165927 2 SREFLGSNYSETFYSMK EIKLNRKTLVLHLLRSREFLGSNYSETFYS EFLGSNYSETFYSMKGEAFTRHPQIMDHCF R S R M K G 0 1 1 0 0 0 2 1 0 0 1 1 1 2 0 4 1 0 2 0 0 0 17 1 2044.92 C9JK28;Q9H2U9 C9JK28 77 93 ADAM7 Disintegrin and metalloproteinase domain-containing protein 7 yes no 3 0.066505 9.5614 By MS/MS 1 0.68132 0.81675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68132 0.81675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10200000 6107700 4091900 0 0 0 0 0 0 10200000 6107700 4091900 0 0 0 0 0 0 0 0 0 31513 705 33138 164904 165928 165928 1 SREIFLSQPILLELEAPLK NVQLTENEIRGLCLKSREIFLSQPILLELE FLSQPILLELEAPLKICGDIHGQYYDLLRL K S R L K I 1 1 0 0 0 1 3 0 0 2 5 1 0 1 2 2 0 0 0 0 0 0 19 1 2195.2566 P62140;E7ETD8;C9J9S3;C9JP48;F8WE71;P62136;E9PMD7;F5H1L6;F5H037;F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 P62136 42 60 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 3.6107E-08 68.639 By MS/MS By matching By matching 1 1 1 0.89457 0.79677 33.815 3 Median NaN NaN NaN 0 0 Median 0.89457 0.79677 NaN 1 0 Median 0.47986 0.52708 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96904 1.0303 NaN 1 0 Median NaN NaN NaN 0 0 Median 12192000 6507300 5684700 0 0 0 10289000 5488300 4800500 1734300 928940 805360 0 0 0 168850 90052 78800 0 0 0 31514 2569;1074;2570 33139 164905;164906;164907 165929 165929 1 SRENPEEDEDQRNPAK MVGEEKMSLRNRLSKSRENPEEDEDQRNPA RENPEEDEDQRNPAKESLETPSNGRIDIKQ K S R A K E 1 2 2 2 0 1 4 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 16 2 1912.8511 P35610;B1APM4 P35610 16 31 SOAT1 Sterol O-acyltransferase 1 yes no 3;4 0.027134 18.138 By matching By MS/MS 3 2 0.87458 0.84336 47.823 5 Median 0.60319 0.58809 67.613 3 0 Median 0.88703 0.85537 1.9986 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2554900 1288900 1266000 414310 210380 203930 2140600 1078500 1062100 0 0 0 0 0 0 0 0 0 0 0 0 31515 2247 33140 164908;164909;164910;164911;164912 165930;165931 165930 2 SREQSSEAAETGVSENEENPVR NINVNSELNPSTGNRSREQSSEAAETGVSE AAETGVSENEENPVRIISVTPVKNIDPVKN R S R V R I 2 2 2 0 0 1 6 1 0 0 0 0 0 0 1 4 1 0 0 2 0 0 22 1 2404.0739 Q29RF7 Q29RF7 1182 1203 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 4.9533E-18 100.19 By MS/MS By MS/MS By MS/MS 1 2 1 0.88523 0.929 25.156 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75913 0.92326 NaN 1 0 Median 1.0365 0.97593 6.0912 2 0 Median 0.53963 0.58375 NaN 1 0 Median NaN NaN NaN 0 0 Median 15353000 8680100 6672700 0 0 0 0 0 0 11493000 6845500 4647700 2569900 1151800 1418100 1289600 682780 606870 0 0 0 31516 3003 33141 164913;164914;164915;164916 165932;165933;165934;165935;165936;165937;165938;165939 165932 8 SREWDMEALR KALKEAVKEIQTSAKSREWDMEALRSTLQT QTSAKSREWDMEALRSTLQTMESDIYTEVR K S R L R S 1 2 0 1 0 0 2 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 10 1 1291.5979 Q07065 Q07065 302 311 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 0.00010732 138.25 By MS/MS By MS/MS 2 1 1.1134 1.0969 8.9669 3 Median 1.0897 1.0736 3.0394 2 0 Median 1.3745 1.2483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67714000 32484000 35231000 63098000 30705000 32393000 4615900 1778500 2837400 0 0 0 0 0 0 0 0 0 0 0 0 31517 2730 33142 164917;164918;164919 165940;165941;165942;165943;165944;165945 165943 6 SRFTPELQPK PIHASQIQKVEPAGRSRFTPELQPKASQSR EPAGRSRFTPELQPKASQSRKRSLATMDSP R S R P K A 0 1 0 0 0 1 1 0 0 0 1 1 0 1 2 1 1 0 0 0 0 0 10 1 1201.6455 Q14676 Q14676 1797 1806 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.00045598 65.627 By MS/MS 2 0.77112 0.90771 21.225 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77112 0.90771 21.225 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7432600 3619700 3812800 0 0 0 0 0 0 7432600 3619700 3812800 0 0 0 0 0 0 0 0 0 31518 2887 33143 164920;164921 165946;165947;165948 165946 3 SRFWYFVSQLK ______________________________ VVAKSRFWYFVSQLKKMKKSSGEIVYCGQV K S R L K K 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 2 0 1 1 1 0 0 11 1 1459.7612 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 13 23 RPL18A 60S ribosomal protein L18a yes no 2;3 0.00090737 107.79 By MS/MS By matching By matching 2 1 1 1.3009 1.2513 4.5063 4 Median 1.1973 1.2513 3.521 2 0 Median 1.3899 1.3321 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3745 1.2097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31271000 14270000 17001000 30961000 14132000 16829000 96111 39739 56372 0 0 0 213180 97659 115520 0 0 0 0 0 0 31519 1433 33144 164922;164923;164924;164925 165949;165950;165951 165949 3 SRFWYFVSQLKK ______________________________ VAKSRFWYFVSQLKKMKKSSGEIVYCGQVF K S R K K M 0 1 0 0 0 1 0 0 0 0 1 2 0 2 0 2 0 1 1 1 0 0 12 2 1587.8562 M0R3D6;M0R1A7;Q02543;M0R117 M0R3D6 13 24 RPL18A 60S ribosomal protein L18a yes no 3 0.00050453 51.726 By MS/MS By matching By MS/MS 1 1 1 1.2977 1.1252 28.974 3 Median 1.3956 1.486 NaN 1 0 Median 1.2977 1.1252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72273 0.83258 NaN 1 0 Median NaN NaN NaN 0 0 Median 19381000 8384500 10997000 15145000 6130400 9014400 1065300 444950 620370 0 0 0 0 0 0 3170800 1809100 1361800 0 0 0 31520 1433 33145 164926;164927;164928 165952;165953;165954 165953 3 SRGFGFITFTNPEHASVAMR PISEVVVVKDRETQRSRGFGFITFTNPEHA FITFTNPEHASVAMRAMNGESLDGRQIRVD R S R M R A 2 2 1 0 0 0 1 2 1 1 0 0 1 3 1 2 2 0 0 1 0 0 20 1 2224.0848 P98179 P98179 46 65 RBM3 RNA-binding protein 3 yes yes 3 0.0068258 23.726 By MS/MS 1 1.0585 1.1896 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0585 1.1896 NaN 1 0 Median NaN NaN NaN 0 0 Median 2687800 1131400 1556400 0 0 0 0 0 0 0 0 0 0 0 0 2687800 1131400 1556400 0 0 0 31521 2672 33146 164929 165955 165955 1 SRGFGFVTYATVEEVDAAMNARPHK TLTDCVVMRDPNTKRSRGFGFVTYATVEEV TVEEVDAAMNARPHKVDGRVVEPKRAVSRE R S R H K V 4 2 1 1 0 0 2 2 1 0 0 1 1 2 1 1 2 0 1 3 0 0 25 2 2752.3391 P09651;F8W6I7;F8VZ49;F8W646;F8VYN5;A0A2R8Y4L2 P09651 54 78 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 4 0.0084518 20.24 By MS/MS 1 0.88158 1.0571 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88158 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median 1567100 864780 702270 0 0 0 0 0 0 0 0 0 0 0 0 1567100 864780 702270 0 0 0 31522 1919;365 33147 164930 165956;165957 165957 2 SRGPATVEDLPSAFEEK SGPQLGTGRGTLRLRSRGPATVEDLPSAFE GPATVEDLPSAFEEKAIEKVDDLLESYMGI R S R E K A 2 1 0 1 0 0 3 1 0 0 1 1 0 1 2 2 1 0 0 1 0 0 17 1 1831.8952 O14908;K7EM11 O14908 247 263 GIPC1 PDZ domain-containing protein GIPC1 yes no 3 0.00036252 51.495 By MS/MS 2 0.67754 0.75284 8.0836 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67754 0.75284 8.0836 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12127000 6685000 5442300 0 0 0 0 0 0 12127000 6685000 5442300 0 0 0 0 0 0 0 0 0 31523 1502 33148 164931;164932 165958;165959 165959 2 SRGSGGLGGACGGAGFGSR PGVSRSGFSSVSVSRSRGSGGLGGACGGAG GGLGGACGGAGFGSRSLYGLGGSKRISIGG R S R S R S 2 2 0 0 1 0 0 9 0 0 1 0 0 1 0 3 0 0 0 0 0 0 19 1 1666.7594 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 41 59 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 0.020806 25.544 By MS/MS 1 0.063909 0.057227 NaN 1 Median NaN NaN NaN 0 0 Median 0.063909 0.057227 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 592470 563930 28549 0 0 0 592470 563930 28549 0 0 0 0 0 0 0 0 0 0 0 0 + 31524 741;748;766 33149 164933 165960 165960 1 SRKESYSIYVYK AVTKAQKKDGKKRKRSRKESYSIYVYKVLK RKRSRKESYSIYVYKVLKQVHPDTGISSKA R S R Y K V 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 3 0 0 3 1 0 0 12 2 1521.7827 Q16778;P33778;P23527;P06899 Q16778 33 44 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J no no 2;3 1.9196E-05 115.18 By MS/MS By matching 3 1 1.0745 1.2211 6.6907 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.048 1.2073 8.0316 3 0 Median 1.5151 1.235 NaN 1 0 Median 61954000 29973000 31981000 0 0 0 0 0 0 0 0 0 0 0 0 55458000 27323000 28135000 6496000 2650700 3845200 31525 2117 33150 164934;164935;164936;164937 165961;165962;165963;165964;165965 165965 5 SRKESYSVYVYK AVTKAQKKDGKKRKRSRKESYSVYVYKVLK RKRSRKESYSVYVYKVLKQVHPDTGISSKA R S R Y K V 0 1 0 0 0 0 1 0 0 0 0 2 0 0 0 3 0 0 3 2 0 0 12 2 1507.7671 U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 33 44 HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K yes no 2;3 3.4341E-05 91.202 By MS/MS By MS/MS By MS/MS 1 3 4 1.1366 1.0983 11.49 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3468 1.1109 NaN 1 0 Median 0.96539 1.1121 2.9148 3 0 Median 1.3291 1.0833 15.449 4 0 Median 120140000 58770000 61369000 0 0 0 0 0 0 0 0 0 899350 383690 515660 97647000 49025000 48621000 21593000 9361200 12232000 31526 2521 33151 164938;164939;164940;164941;164942;164943;164944;164945 165966;165967;165968;165969;165970;165971;165972;165973;165974 165966 9 SRLDQELK VCRKTYVTPRRPFEKSRLDQELKLIGEYGL PRRPFEKSRLDQELKLIGEYGLRNKREVWR K S R L K L 0 1 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 987.53491 P46781;B5MCT8;C9JM19;F2Z3C0;A8MXK4 P46781 23 30 RPS9 40S ribosomal protein S9 yes no 2 0.033397 80.438 By MS/MS 1 0.42269 0.43859 NaN 1 Median 0.42269 0.43859 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83017000 63491000 19526000 83017000 63491000 19526000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31527 2345 33152 164946 165975 165975 1 SRLEQEIATYR SERQNQEYQRLMDIKSRLEQEIATYRSLLE MDIKSRLEQEIATYRSLLEGQEDHYNNLSA K S R Y R S 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 11 1 1364.7048 CON__P08727;P08727;CON__P19001 CON__P08727 371 381 KRT19 Keratin, type I cytoskeletal 19 no no 2;3 1.7757E-29 208.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 2 4 7 1.1492 1.1889 36.791 22 Median 0.90777 0.95513 4.3792 2 0 Median 1.8188 1.6985 8.3988 2 0 Median 1.0597 1.1273 55.549 5 1 Median 1.522 1.3398 2.4084 2 0 Median 1.0502 1.1311 14.129 4 0 Median 1.4337 1.261 40.806 7 0 Median 1294500000 586750000 707790000 133160000 67912000 65252000 92623000 25343000 67280000 674350000 339500000 334850000 58828000 19856000 38972000 217630000 92003000 125630000 117940000 42140000 75799000 + 31528 752;760 33153 164947;164948;164949;164950;164951;164952;164953;164954;164955;164956;164957;164958;164959;164960;164961;164962;164963;164964;164965;164966;164967;164968 165976;165977;165978;165979;165980;165981;165982;165983;165984;165985;165986;165987;165988;165989;165990;165991;165992;165993;165994;165995;165996;165997;165998;165999;166000;166001;166002;166003 165981 28 SRLGDLYEEEMR KILLAELEQLKGQGKSRLGDLYEEEMRELR QGKSRLGDLYEEEMRELRRQVDQLTNDKAR K S R M R E 0 2 0 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 1 0 0 0 12 1 1496.6929 P08670;B0YJC4 P08670 144 155 VIM Vimentin yes no 2;3 1.0696E-07 129.34 By MS/MS By matching 3 1 1.0541 1.1426 54.871 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3042 1.4144 36.783 3 1 Median 0.61643 0.54216 NaN 1 0 Median 26607000 12387000 14219000 0 0 0 0 0 0 0 0 0 0 0 0 26503000 12321000 14182000 103960 66122 37838 31529 1907 33154 164969;164970;164971;164972 166004;166005;166006 166006 3 SRNTDEMVELR KRPAEDMEEEQAFKRSRNTDEMVELRILLQ AFKRSRNTDEMVELRILLQSKNAGAVIGKG R S R L R I 0 2 1 1 0 0 2 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 11 1 1348.6405 P61978;S4R457;Q5T6W2 P61978 36 46 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 5.0043E-65 247.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 6 11 6 1.0514 1.1121 18.204 29 Median 1.2087 1.2056 23.093 2 0 Median NaN NaN NaN 0 0 Median 0.92762 0.98164 35.07 4 0 Median 1.3574 1.2321 4.5413 6 0 Median 0.99587 1.0923 8.259 11 0 Median 1.2771 1.1418 12.937 6 1 Median 286200000 141080000 145130000 17916000 8061600 9854100 0 0 0 31595000 15755000 15840000 11516000 5040400 6475600 196280000 99953000 96330000 28894000 12266000 16628000 31530 2565;3093 33155;33156 164973;164974;164975;164976;164977;164978;164979;164980;164981;164982;164983;164984;164985;164986;164987;164988;164989;164990;164991;164992;164993;164994;164995;164996;164997;164998;164999;165000;165001 166007;166008;166009;166010;166011;166012;166013;166014;166015;166016;166017;166018;166019;166020;166021;166022;166023;166024;166025;166026;166027;166028;166029;166030;166031;166032;166033;166034;166035;166036;166037;166038;166039;166040 166021 1240 34 SRPAPSPESIKR GLARVADNAQQQYVRSRPAPSPESIKRAKE YVRSRPAPSPESIKRAKEMDLVGLGLHPLF R S R K R A 1 2 0 0 0 0 1 0 0 1 0 1 0 0 3 3 0 0 0 0 0 0 12 2 1323.7259 Q8TDD1 Q8TDD1 522 533 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.011125 26.969 By matching By MS/MS By matching 1 1 1 0.70419 0.72324 6.9578 3 Median NaN NaN NaN 0 0 Median 0.70419 0.76378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56866 0.66524 NaN 1 0 Median 0.83436 0.72324 NaN 1 0 Median 1225100 650150 574990 0 0 0 508880 221130 287760 0 0 0 0 0 0 560140 358320 201810 156130 70701 85426 31531 3470 33157 165002;165003;165004 166041;166042 166042 2 SRPEFMLPVHFYGK EEADDWLRYGNPWEKSRPEFMLPVHFYGKV KSRPEFMLPVHFYGKVEHTNTGTKWIDTQV K S R G K V 0 1 0 0 0 0 1 1 1 0 1 1 1 2 2 1 0 0 1 1 0 0 14 1 1706.8603 P06737;E9PK47 P06737 193 206 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 3 0.037555 27.649 By MS/MS 1 1.1654 1.1576 NaN 1 Median NaN NaN NaN 0 0 Median 1.1654 1.1576 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8334200 2917900 5416200 0 0 0 8334200 2917900 5416200 0 0 0 0 0 0 0 0 0 0 0 0 31532 1874 33158 165005 166043 166043 1 SRPELLEYYIK STSLKAKVLETFLAKSRPELLEYYIKVILD FLAKSRPELLEYYIKVILDYNTAHNKVALS K S R I K V 0 1 0 0 0 0 2 0 0 1 2 1 0 0 1 1 0 0 2 0 0 0 11 1 1409.7555 Q14258 Q14258 448 458 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2;3 0.00023743 94.692 By MS/MS By matching By matching By matching 4 1 1 1 0.88446 0.9035 48.2 7 Median 0.79774 0.81311 56.926 4 1 Median 0.9253 0.89518 NaN 1 0 Median 0.88446 0.93996 NaN 1 0 Median 1.3787 1.2642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49452000 33140000 16312000 45481000 31232000 14249000 1625800 804970 820820 2102100 1001900 1100300 243010 101310 141700 0 0 0 0 0 0 31533 2870 33159 165006;165007;165008;165009;165010;165011;165012 166044;166045 166044 2 SRPFTVAASFQSTSVK LDLKKLRRSSSLKERSRPFTVAASFQSTSV RPFTVAASFQSTSVKSPKTVSPPIRKGWSM R S R V K S 2 1 0 0 0 1 0 0 0 0 0 1 0 2 1 4 2 0 0 2 0 0 16 1 1711.8893 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 588 603 LIMA1 LIM domain and actin-binding protein 1 yes no 2;3 3.2525E-08 93.348 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 4 3 2 1 0.77369 0.85496 22.191 14 Median 1.0065 1.0319 21.59 3 2 Median 0.70638 0.7087 NaN 1 0 Median 0.78611 0.79465 13.96 4 1 Linear 0.98774 0.93547 3.9959 3 0 Median 0.64519 0.7096 23.889 2 1 Median 0.76504 0.67337 NaN 1 0 Median 89457000 47995000 41462000 15376000 7716300 7659900 1047200 621530 425630 51454000 28611000 22843000 4929000 2386000 2543000 16165000 8433700 7731200 485540 226310 259230 31534 4273 33160 165013;165014;165015;165016;165017;165018;165019;165020;165021;165022;165023;165024;165025;165026 166046;166047;166048;166049;166050;166051;166052;166053;166054;166055;166056;166057;166058;166059 166057 14 SRPGPSLQIQDLK MAVKAPHQVPVQSEKSRPGPSLQIQDLKGT EKSRPGPSLQIQDLKGTNRDPRLNRISQHS K S R L K G 0 1 0 1 0 2 0 1 0 1 2 1 0 0 2 2 0 0 0 0 0 0 13 1 1437.794 O94913;E9PKN0;E9PQ01 O94913 279 291 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 yes no 3 0.00022478 67.234 By MS/MS By matching 1 1 0.56688 0.60988 17.735 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44873 0.538 NaN 1 0 Median 0.71615 0.69136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8929000 5967800 2961200 0 0 0 0 0 0 8150900 5529800 2621000 778160 438000 340160 0 0 0 0 0 0 31535 1736 33161 165027;165028 166060 166060 1 SRPVDPSVPFDSK EDLPCGLVLSSIGYKSRPVDPSVPFDSKLG YKSRPVDPSVPFDSKLGVIPNVEGRVMDVP K S R S K L 0 1 0 2 0 0 0 0 0 0 0 1 0 1 3 3 0 0 0 2 0 0 13 1 1429.7201 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 364 376 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 2;3 1.7503E-06 113.67 By matching By matching By MS/MS By MS/MS 1 1 2 2 1.0739 0.9884 39.494 6 Median 0.93077 0.9332 NaN 1 0 Median 1.2389 1.0469 NaN 1 0 Median 0.58396 0.59238 17.473 2 0 Median 1.4403 1.3763 14.569 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57469000 30322000 27147000 3047900 1789400 1258500 278920 116120 162800 24619000 14320000 10299000 29524000 14097000 15427000 0 0 0 0 0 0 31536 2102 33162 165029;165030;165031;165032;165033;165034 166061;166062;166063;166064;166065;166066;166067 166067 7 SRQPPLVTGISPNEGIPWTK ______________________________ LVTGISPNEGIPWTKVTIRGENLGTGPTDL R S R T K V 0 1 1 0 0 1 1 2 0 2 1 1 0 0 4 2 2 1 0 1 0 0 20 1 2176.1641 Q96KP1;Q2MDF5 Q96KP1 4 23 EXOC2 Exocyst complex component 2 yes no 3 0.000166 36.246 By MS/MS 1 0.48321 0.54924 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48321 0.54924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2567700 1695300 872340 0 0 0 0 0 0 2567700 1695300 872340 0 0 0 0 0 0 0 0 0 31537 3695 33163 165035 166068 166068 1 SRSEHNLVNIQK LTELHQLIKQTQEERSRSEHNLVNIQKTHE EERSRSEHNLVNIQKTHERMQTENKISPYY R S R Q K T 0 1 2 0 0 1 1 0 1 1 1 1 0 0 0 2 0 0 0 1 0 0 12 1 1423.7532 Q96ES7;H3BPL5 Q96ES7 29 40 CCDC101 SAGA-associated factor 29 homolog yes no 3 0.009411 28.624 By MS/MS 1 1.4157 1.336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4157 1.336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1523700 624710 898940 0 0 0 0 0 0 0 0 0 1523700 624710 898940 0 0 0 0 0 0 31538 3641 33164 165036 166069;166070 166069 2 SRSGEGEVSGLMR DPYSSAEPHVSGVKRSRSGEGEVSGLMRKV KRSRSGEGEVSGLMRKVPRVSLERLDLDLT R S R M R K 0 2 0 0 0 0 2 3 0 0 1 0 1 0 0 3 0 0 0 1 0 0 13 1 1363.6514 Q13263;M0R0K9 Q13263 471 483 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.00090099 46.481 By MS/MS By matching 2 1 1.0715 1.0986 14.204 3 Median 1.0764 1.1488 6.3204 2 0 Median NaN NaN NaN 0 0 Median 0.88879 0.90958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5286300 2576500 2709800 4271700 2006400 2265300 0 0 0 1014600 570170 444470 0 0 0 0 0 0 0 0 0 31539 2802 33165 165037;165038;165039 166071;166072 166072 2 SRTEAESWYQTK IIAEVKAQYEEIANRSRTEAESWYQTKYEE ANRSRTEAESWYQTKYEELQQTAGRHGDDL R S R T K Y 1 1 0 0 0 1 2 0 0 0 0 1 0 0 0 2 2 1 1 0 0 0 12 1 1484.6896 CON__P13647;P13647;H0YI76;H0YIN9 CON__P13647 353 364 KRT5 Keratin, type II cytoskeletal 5 no no 3 0.0022989 57.106 By MS/MS By MS/MS By MS/MS 1 1 3 0.2366 0.20944 112.52 5 Median NaN NaN NaN 0 0 Median 0.58678 0.50761 NaN 1 1 Median 0.47415 0.54761 NaN 1 1 Median 0.12311 0.11468 88.617 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5560900 4890400 670490 0 0 0 679730 480310 199420 1569700 1385600 184150 3311400 3024500 286920 0 0 0 0 0 0 + 31540 757 33166 165040;165041;165042;165043;165044 166073;166074;166075;166076;166077 166077 5 SRTEAESWYQTKYEELQQTAGR IIAEVKAQYEEIANRSRTEAESWYQTKYEE WYQTKYEELQQTAGRHGDDLRNTKHEISEM R S R G R H 2 2 0 0 0 3 4 1 0 0 1 1 0 0 0 2 3 1 2 0 0 0 22 2 2660.2467 CON__P13647;P13647;H0YI76;H0YIN9 CON__P13647 353 374 KRT5 Keratin, type II cytoskeletal 5 no no 4 8.6535E-19 86.625 By MS/MS 1 2.6245 2.5318 NaN 1 Median 2.6245 2.5318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20005000 6998900 13006000 20005000 6998900 13006000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 31541 757 33167 165045 166078 166078 1 SRVEEPSGAVTTPAGVIAAAGPQGPGTGE ASASASSTGEPEVKRSRVEEPSGAVTTPAG GVIAAAGPQGPGTGE_______________ R S R G E - 5 1 0 0 0 1 3 6 0 1 0 0 0 0 4 2 3 0 0 3 0 0 29 1 2662.3198 P85037 P85037 705 733 FOXK1 Forkhead box protein K1 yes yes 3 3.9032E-09 44.931 By matching By MS/MS By matching 1 1 1 0.51821 0.53739 3.3245 3 Median 0.51821 0.51296 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50525 0.53739 NaN 1 0 Median 0.64658 0.54708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9882600 6235100 3647500 1857400 1326500 530850 0 0 0 7644300 4688500 2955800 380890 220110 160780 0 0 0 0 0 0 31542 2669 33168 165046;165047;165048 166079;166080 166079 2 SRVTQSNFAVGYK EGWLAGYQMNFETAKSRVTQSNFAVGYKTD AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE K S R Y K T 1 1 1 0 0 1 0 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 13 1 1455.747 P21796;C9JI87 P21796 162 174 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 3.7649E-05 90.653 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.99793 1.0122 29.61 6 Median 1.0092 1.0222 1.9524 3 2 Plateau 0.71743 0.71259 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0886 1.0274 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9486 1.7832 NaN 1 0 Median 135210000 66367000 68847000 128760000 63420000 65336000 2877600 1214100 1663500 0 0 0 3108600 1579100 1529500 0 0 0 471660 153590 318070 31543 2092 33169 165049;165050;165051;165052;165053;165054 166081;166082;166083;166084;166085 166081 5 SRWDETPASQMGGSTPVLTPGK DSIGETPTPGASKRKSRWDETPASQMGGST ASQMGGSTPVLTPGKTPIGTPAMNMATPTP K S R G K T 1 1 0 1 0 1 1 3 0 0 1 1 1 0 3 3 3 1 0 1 0 0 22 1 2301.1059 O75533 O75533 336 357 SF3B1 Splicing factor 3B subunit 1 yes yes 3 1.6106E-12 73.672 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.67212 0.66573 12.653 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56426 0.63967 9.3835 2 1 Median 0.69273 0.66573 3.5599 2 2 Median 0.75687 0.83255 NaN 1 0 Median 0.66874 0.58475 NaN 1 0 Median 50487000 30699000 19789000 0 0 0 0 0 0 31901000 20035000 11867000 6052600 3418200 2634400 11432000 6610600 4821700 1101100 635060 466010 31544 1683 33170;33171 165055;165056;165057;165058;165059;165060 166086;166087;166088;166089;166090;166091;166092 166087 548 7 SRYEQVDLVGK TCPQWVYKVAKKYMKSRYEQVDLVGKMTQK KYMKSRYEQVDLVGKMTQKAATTVEHLAIQ K S R G K M 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 1 2 0 0 11 1 1292.6725 Q9BQ39;A0A087WVC1 Q9BQ39 343 353 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.00069891 97.456 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1346 1.0836 11.706 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9673 1.0637 17.619 2 0 Median 1.3086 1.2454 NaN 1 0 Median 0.98507 1.0836 NaN 1 0 Median 1.1699 1.0172 NaN 1 0 Median 25327000 12518000 12809000 0 0 0 0 0 0 9380800 4790600 4590100 1398000 535290 862720 12331000 6193600 6137600 2217400 998710 1218700 31545 3781 33172 165061;165062;165063;165064;165065 166093;166094;166095;166096;166097;166098;166099 166095 7 SRYQDILVFR QALSLQVEQLLHHRRSRYQDILVFRSKTYG LHHRRSRYQDILVFRSKTYGNVLVLDGVIQ R S R F R S 0 2 0 1 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 0 10 1 1295.6986 P19623;K7EKM4 P19623 46 55 SRM Spermidine synthase yes no 3 0.0017473 50.353 By MS/MS 1 1.234 1.3285 NaN 1 Median 1.234 1.3285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2792000 1283300 1508700 2792000 1283300 1508700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31546 2068 33173 165066 166100;166101 166100 2 SRYSFIQALVR QKKLLDIEGLYSKVRSRYSFIQALVRRIRG SKVRSRYSFIQALVRRIRGLLRISRN____ R S R V R R 1 2 0 0 0 1 0 0 0 1 1 0 0 1 0 2 0 0 1 1 0 0 11 1 1338.7408 Q92621 Q92621 1991 2001 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.0030932 38.783 By MS/MS 1 1.5411 1.9468 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5411 1.9468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1668600 711190 957410 0 0 0 0 0 0 1668600 711190 957410 0 0 0 0 0 0 0 0 0 31547 3547 33174 165067 166102 166102 1 SSAAEPPPPPPPESAPSKPAASIASGGSNSSNK ______________________________ PAASIASGGSNSSNKGGPEGVAAQAVASAA M S S N K G 6 0 2 0 0 0 2 2 0 1 0 2 0 0 9 9 0 0 0 0 0 0 33 1 3070.4843 O60264 O60264 2 34 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 4.6777E-31 85.866 By matching By MS/MS 1 1 0.22395 0.25079 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22395 0.25079 NaN 1 0 Median NaN NaN NaN 0 0 Median 35646000 25414000 10232000 0 0 0 0 0 0 26951000 18513000 8437600 0 0 0 8695300 6900800 1794500 0 0 0 31548 1608 33175 165068;165069 166103 166103 1 SSADDEIEETR KVEENPDADSDFDAKSSADDEIEETRVNCR FDAKSSADDEIEETRVNCRREKVIETPEND K S S T R V 1 1 0 2 0 0 3 0 0 1 0 0 0 0 0 2 1 0 0 0 0 0 11 0 1250.5263 A0A024QZ33;Q9H0G5 A0A024QZ33 200 210 CCDC55;NSRP1 Nuclear speckle splicing regulatory protein 1 yes no 2 0.0024031 53.683 By MS/MS 1 1.2253 1.0315 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2253 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 580480 269420 311070 0 0 0 0 0 0 0 0 0 580480 269420 311070 0 0 0 0 0 0 31549 0 33176 165070 166104;166105 166105 2 SSADQEEPLPHELRPLPVLSR TDQVDHAAAVKEYSRSSADQEEPLPHELRP EPLPHELRPLPVLSRTMDYLVTQIMDQKEG R S S S R T 1 2 0 1 0 1 3 0 1 0 4 0 0 0 4 3 0 0 0 1 0 0 21 1 2369.2339 O60318 O60318 679 699 MCM3AP Germinal-center associated nuclear protein yes yes 3 0.017397 17.148 By MS/MS 1 0.3543 0.44757 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3543 0.44757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7575600 5627300 1948300 0 0 0 0 0 0 7575600 5627300 1948300 0 0 0 0 0 0 0 0 0 31550 1612 33177 165071 166106 166106 1 SSAEMIENTNSLGK KSAKITPCALCKSLRSSAEMIENTNSLGKT RSSAEMIENTNSLGKTELFCSVNCLSAYRV R S S G K T 1 0 2 0 0 0 2 1 0 1 1 1 1 0 0 3 1 0 0 0 0 0 14 0 1479.6875 Q5VZL5 Q5VZL5 539 552 ZMYM4 Zinc finger MYM-type protein 4 yes yes 2 8.9958E-05 83.045 By MS/MS 1 0.81705 0.90772 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81705 0.90772 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6972400 3187500 3784900 0 0 0 0 0 0 6972400 3187500 3784900 0 0 0 0 0 0 0 0 0 31551 3117 33178 165072 166107 166107 1 SSAEVIAQAR NQTNCPLYITKVMSKSSAEVIAQARKKGTV KVMSKSSAEVIAQARKKGTVVYGEPITASL K S S A R K 3 1 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 0 1 0 0 10 0 1030.5407 Q16555;A0A1C7CYX9 Q16555 259 268 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 4.5423E-05 137.9 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0929 1.0677 29.887 5 Median 0.7452 0.71133 NaN 1 0 Median 1.6015 1.3876 10.526 2 1 Median 0.82168 0.86201 NaN 1 0 Median 1.0929 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28229000 12649000 15580000 9550600 5570800 3979800 16681000 6212100 10469000 1256100 568980 687080 741010 296790 444220 0 0 0 0 0 0 31552 328 33179 165073;165074;165075;165076;165077 166108;166109;166110;166111;166112 166111 5 SSAFGTLNWFTK MHIKLPLKPNDLKNRSSAFGTLNWFTKVLS KNRSSAFGTLNWFTKVLSVDESIIKPEQEF R S S T K V 1 0 1 0 0 0 0 1 0 0 1 1 0 2 0 2 2 1 0 0 0 0 12 0 1357.6667 Q4KMQ2 Q4KMQ2 155 166 ANO6 Anoctamin-6 yes yes 2 0.00060398 70.1 By MS/MS By matching 1 2 0.89622 0.82366 23.697 3 Median 0.82987 0.82366 NaN 1 0 Median 1.1084 0.97736 30.461 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3901100 1993800 1907200 3059700 1622800 1436800 841430 371020 470410 0 0 0 0 0 0 0 0 0 0 0 0 31553 3023 33180 165078;165079;165080 166113;166114 166114 2 SSAIVEIFSK LRVTAKELSLVNKNKSSAIVEIFSKYQKAA VNKNKSSAIVEIFSKYQKAAEETNMEKKRS K S S S K Y 1 0 0 0 0 0 1 0 0 2 0 1 0 1 0 3 0 0 0 1 0 0 10 0 1079.5863 Q9UHB6;F8VRN8;F8VVQ7;F8VTU2 Q9UHB6 31 40 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.029185 34.387 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1.3613 1.1785 20.93 6 Median 1.4879 1.4509 11.985 2 0 Median NaN NaN NaN 0 0 Median 0.90489 0.99264 NaN 1 0 Median 1.3737 1.2008 NaN 1 0 Median 0.84986 0.87524 NaN 1 0 Median 1.3491 1.1567 NaN 1 0 Median 7317300 3651700 3665600 1957300 873960 1083300 0 0 0 3167400 1630200 1537200 143160 42491 100670 1876400 1041500 834830 173050 63512 109540 31554 4273 33181 165081;165082;165083;165084;165085;165086 166115 166115 1 SSALQWLTPEQTSGK NQEIVIEISFETSPKSSALQWLTPEQTSGK SSALQWLTPEQTSGKEHPYLFSQCQAIHCR K S S G K E 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 3 2 1 0 0 0 0 15 0 1631.8155 P09960 P09960 113 127 LTA4H Leukotriene A-4 hydrolase yes yes 2 1.0069E-09 106.67 By MS/MS By matching 1 1 0.9734 0.8652 2.5217 2 Median 0.90779 0.84991 NaN 1 0 Median 1.0438 0.88076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22415000 10892000 11523000 15811000 8069700 7740800 6604700 2822700 3782000 0 0 0 0 0 0 0 0 0 0 0 0 31555 1924 33182 165087;165088 166116 166116 1 SSALREEVQSLR LQAETASNSARAAERSSALREEVQSLREEA AERSSALREEVQSLREEAEKQRVASENLRQ R S S L R E 1 2 0 0 0 1 2 0 0 0 2 0 0 0 0 3 0 0 0 1 0 0 12 1 1373.7263 Q14980 Q14980 1287 1298 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 6.1417E-09 147.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 3 1.0465 1.0388 11.006 8 Median NaN NaN NaN 0 0 Median 1.2633 1.2757 NaN 1 1 Median 0.93241 1.1779 7.1902 2 0 Median 1.1471 1.0388 2.0156 2 0 Median 0.89526 0.96847 2.245 2 0 Median 1.1163 0.97975 NaN 1 0 Median 85415000 44508000 40907000 0 0 0 3329200 1336900 1992300 40314000 20926000 19388000 4765600 2175600 2590100 33708000 18569000 15139000 3297700 1500100 1797600 31556 2905 33183 165089;165090;165091;165092;165093;165094;165095;165096;165097;165098 166117;166118;166119;166120;166121;166122;166123;166124;166125;166126;166127;166128;166129;166130 166129 14 SSALREEVQSLREEAEK LQAETASNSARAAERSSALREEVQSLREEA ALREEVQSLREEAEKQRVASENLRQELTSQ R S S E K Q 2 2 0 0 0 1 5 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 17 2 1959.9861 Q14980 Q14980 1287 1303 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 4.7127E-11 104.89 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.96748 1.1297 13.815 4 Median NaN NaN NaN 0 0 Median 1.0417 1.1819 NaN 1 0 Median 0.89852 1.0798 NaN 1 0 Median 1.207 1.209 NaN 1 0 Median 0.81306 0.89234 NaN 1 0 Median NaN NaN NaN 0 0 Median 138870000 70564000 68307000 0 0 0 2641200 1139600 1501600 125010000 63013000 61993000 996290 360410 635880 10227000 6050800 4176500 0 0 0 31557 2905 33184 165099;165100;165101;165102 166131;166132;166133;166134 166132 4 SSANVEEAFFTLAR LAIDYGIKFLETSAKSSANVEEAFFTLARD KSSANVEEAFFTLARDIMTKLNRKMVCITY K S S A R D 3 1 1 0 0 0 2 0 0 0 1 0 0 2 0 2 1 0 0 1 0 0 14 0 1540.7522 H0YNE9;Q92930 H0YNE9 154 167 RAB8B Ras-related protein Rab-8B yes no 2 0.00099106 52.928 By MS/MS By matching By matching 1 1 1 0.93986 0.87762 16.36 3 Median 0.72053 0.67916 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93986 0.87762 NaN 1 0 Median 1.1344 0.92067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2431100 1351700 1079400 1812400 1039600 772750 0 0 0 506690 259460 247230 112060 52611 59447 0 0 0 0 0 0 31558 1203 33185 165103;165104;165105 166135;166136 166136 2 SSAPTTPPSVDKVDGFSR ______________________________ PTTPPSVDKVDGFSRKSVRKARQKRSQSSS M S S S R K 1 1 0 2 0 0 0 1 0 0 0 1 0 1 3 4 2 0 0 2 0 0 18 1 1846.9061 Q16537 Q16537 2 19 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform yes yes 2 1.5449E-06 79.633 By matching By MS/MS 1 1 1.0305 0.96893 85.692 2 Median NaN NaN NaN 0 0 Median 2.0333 1.776 NaN 1 0 Median 0.52231 0.52862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5550500 3232900 2317500 0 0 0 1128200 400650 727550 4422300 2832300 1590000 0 0 0 0 0 0 0 0 0 31559 2986 33186 165106;165107 166137 166137 1 SSAQDPQAVLGALGR IPAACGATLPALGLRSSAQDPQAVLGALGR SSAQDPQAVLGALGRALSPLEEWLRLHTYL R S S G R A 3 1 0 1 0 2 0 2 0 0 2 0 0 0 1 2 0 0 0 1 0 0 15 0 1468.7634 P26640;A0A140T936;A0A140T954;A2ABF4;A0A0G2JJT9;A0A140T904 P26640 123 137 VARS Valine--tRNA ligase yes no 2 1.0533E-10 110.39 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.1197 0.95512 14.374 5 Median 0.91999 0.88561 NaN 1 0 Median 1.1283 0.95512 NaN 1 0 Median 1.1197 1.2312 NaN 1 0 Median 1.2332 1.0478 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0523 0.8651 NaN 1 0 Median 37511000 17363000 20147000 18153000 9441300 8711400 4269100 2011900 2257300 10531000 4005200 6525800 4278400 1774600 2503800 0 0 0 279370 130290 149080 31560 2148 33187 165108;165109;165110;165111;165112 166138;166139;166140;166141 166140 4 SSASFNVIEFPYK TFMNKENQNHSYSLKSSASFNVIEFPYKNL LKSSASFNVIEFPYKNLPIEDITNSTLVTT K S S Y K N 1 0 1 0 0 0 1 0 0 1 0 1 0 2 1 3 0 0 1 1 0 0 13 0 1487.7296 P06756;H7BZG1 P06756 952 964 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain yes no 2 0.00058289 70.056 By MS/MS 1 0.87645 0.81426 NaN 1 Median 0.87645 0.81426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5727700 3071700 2656000 5727700 3071700 2656000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31561 1878 33188 165113 166142;166143 166143 2 SSASFSTTAVSAR EDKLDTKHYPYISTRSSASFSTTAVSARYG TRSSASFSTTAVSARYGHWHKNKAPGEYRS R S S A R Y 3 1 0 0 0 0 0 0 0 0 0 0 0 1 0 5 2 0 0 1 0 0 13 0 1270.6153 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;A0A096LP52 A0A1B0GWF2 506 518 STXBP1 Syntaxin-binding protein 1 yes no 2 7.4802E-07 103.34 By matching By MS/MS 1 1 1.1667 1.078 7.7391 2 Median 1.1562 1.1386 NaN 1 0 Median 1.1773 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7874100 3809800 4064400 3685400 1828100 1857300 4188800 1981700 2207000 0 0 0 0 0 0 0 0 0 0 0 0 31562 271 33189 165114;165115 166144;166145 166144 2 SSASVVFTTYTQK FVAQAVLQFLCLKNKSSASVVFTTYTQKHP NKSSASVVFTTYTQKHPSIEDGPPFVEPLL K S S Q K H 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 3 3 0 1 2 0 0 13 0 1417.7089 Q7L5D6 Q7L5D6 210 222 GET4 Golgi to ER traffic protein 4 homolog yes yes 2 4.4682E-07 166.55 By MS/MS By MS/MS 1 1 1.0116 0.89083 15.533 2 Median 1.0946 0.99425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93493 0.79816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22089000 10048000 12041000 21340000 9675400 11665000 0 0 0 0 0 0 748790 372370 376410 0 0 0 0 0 0 31563 3225 33190 165116;165117 166146;166147;166148 166147 3 SSATSGDIWPGLSAYDNSPR TFEHDPSESIDEFNKSSATSGDIWPGLSAY GDIWPGLSAYDNSPRSPHSPSPIATPPSQS K S S P R S 2 1 1 2 0 0 0 2 0 1 1 0 0 0 2 5 1 1 1 0 0 0 20 0 2079.9498 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 205 224 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.0074671 26.124 By matching By MS/MS 1 2 0.62699 0.63309 6.6132 3 Plateau 0.63212 0.63309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57674 0.60905 8.8025 2 0 Median NaN NaN NaN 0 0 Median 3861500 2223000 1638500 1372300 848100 524180 0 0 0 0 0 0 0 0 0 2489300 1374900 1114300 0 0 0 31564 4175 33191 165118;165119;165120 166149 166149 1 SSAVDPEPQVK KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP R S S V K L 1 0 0 1 0 1 1 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 11 0 1155.5772 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 248 258 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.011618 38.086 By MS/MS By MS/MS 1 2 0.88178 0.74299 21.016 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5005 0.52532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9029 0.75515 2.2972 2 0 Median 7905100 4761900 3143300 0 0 0 0 0 0 5486200 3428800 2057500 0 0 0 0 0 0 2418900 1333100 1085800 31565 3075 33192 165121;165122;165123 166150;166151;166152;166153 166153 4 SSAVDPEPQVKLEDVLPLAFTR KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV PQVKLEDVLPLAFTRLCEPKEASYSLIRKY R S S T R L 2 1 0 2 0 1 2 0 0 0 3 1 0 1 3 2 1 0 0 3 0 0 22 1 2410.2744 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 248 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 2.6688E-12 68.762 By matching By MS/MS By matching 1 3 1 0.52828 0.54891 39.499 5 Median NaN NaN NaN 0 0 Median 1.2712 1.0793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5006 0.53512 1.7424 3 0 Median 1.2322 1.1332 NaN 1 0 Median 18403000 11752000 6650800 0 0 0 551150 255660 295480 0 0 0 0 0 0 17333000 11217000 6115800 518420 278940 239480 31566 3075 33193 165124;165125;165126;165127;165128 166154;166155;166156;166157;166158 166156 5 SSAVQQLLEK ITFVRKNKTLSAAFKSSAVQQLLEKNYRIH SAAFKSSAVQQLLEKNYRIHCSVHNIIIPE K S S E K N 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1101.603 Q9UNQ2;A0A0C4DGB1;A0A494C0G7 Q9UNQ2 244 253 DIMT1 Probable dimethyladenosine transferase yes no 2 0.014003 39.305 By MS/MS 1 0.79853 0.76343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79853 0.76343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2981500 1408200 1573300 0 0 0 0 0 0 2981500 1408200 1573300 0 0 0 0 0 0 0 0 0 31567 4348 33194 165129 166159 166159 1 SSAVVVDAIPVFLEK HACRALTYMMEALPRSSAVVVDAIPVFLEK SSAVVVDAIPVFLEKLQVIQCIDVAEQALT R S S E K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 4 0 0 15 0 1572.8763 Q14669 Q14669 515 529 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0011976 42.001 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.1074 1.0038 14.428 5 Median 1.3057 1.2321 NaN 1 0 Median 1.3111 1.1363 NaN 1 0 Median 0.90513 1.0038 NaN 1 0 Median 0.94435 0.84864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1074 0.97208 NaN 1 0 Median 10036000 5005500 5030000 1142600 460890 681750 681290 349570 331730 7883200 4017400 3865800 256080 134060 122020 0 0 0 72360 43575 28785 31568 2886 33195 165130;165131;165132;165133;165134 166160;166161 166161 2 SSAYESLMEIVK LETTDRPDGHQNNLRSSAYESLMEIVKNSA NLRSSAYESLMEIVKNSAKDCYPAVQKTTL R S S V K N 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 3 0 0 1 1 0 0 12 0 1355.6643 Q14974;J3KTM9;J3QKQ5 Q14974 526 537 KPNB1 Importin subunit beta-1 yes no 2 5.6046E-05 94.692 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 1 1.2018 1.186 14.932 10 Median 1.1319 1.0528 12.094 4 0 Median 1.3548 1.1788 4.9154 2 0 Median 1.1369 1.2455 5.9845 3 0 Median NaN NaN NaN 0 0 Median 1.4858 1.5239 NaN 1 0 Median NaN NaN NaN 0 0 Median 146460000 64946000 81519000 33041000 14964000 18078000 53680000 22644000 31036000 51957000 23940000 28018000 0 0 0 7786200 3398500 4387800 0 0 0 31569 2904 33196 165135;165136;165137;165138;165139;165140;165141;165142;165143;165144 166162;166163;166164;166165;166166;166167;166168;166169;166170;166171;166172;166173;166174 166173 13 SSDAFTTQHALR VEQEAQVETSPETSRSSDAFTTQHALRQAQ TSRSSDAFTTQHALRQAQMSKELVELNKAL R S S L R Q 2 1 0 1 0 1 0 0 1 0 1 0 0 1 0 2 2 0 0 0 0 0 12 0 1332.6422 O95239 O95239 507 518 KIF4A Chromosome-associated kinesin KIF4A yes yes 2;3 0.00014602 153.05 By MS/MS By MS/MS By matching 2 2 1 1.0676 1.058 14.872 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0245 1.1266 5.822 2 0 Median 1.1813 1.0206 5.0894 2 0 Median NaN NaN NaN 0 0 Median 0.9522 0.79321 NaN 1 0 Median 24943000 11980000 12964000 0 0 0 0 0 0 18098000 8600600 9497800 5082600 2496300 2586300 0 0 0 1762500 883020 879440 31570 1757 33197 165145;165146;165147;165148;165149 166175;166176;166177;166178;166179 166177 5 SSDASQGVITTPPPPSMPHK ______________________________ QGVITTPPPPSMPHKERYFDRINENDPEYI M S S H K E 1 0 0 1 0 1 0 1 1 1 0 1 1 0 5 4 2 0 0 1 0 0 20 0 2032.9888 Q9UEY8 Q9UEY8 2 21 ADD3 Gamma-adducin yes yes 2 3.2671E-18 135.58 By MS/MS 1 0.33609 0.34606 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33609 0.34606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7812400 5839000 1973400 0 0 0 0 0 0 7812400 5839000 1973400 0 0 0 0 0 0 0 0 0 31571 4257 33198 165150 166180;166181 166180 2 SSDEAVILCK NVALTFLEKTREKVKSSDEAVILCKTAIGA REKVKSSDEAVILCKTAIGALKLNIGDLQV K S S C K T 1 0 0 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1120.5434 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 106 115 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.0041692 54.157 By MS/MS 1 1.0637 0.91731 NaN 1 Median NaN NaN NaN 0 0 Median 1.0637 0.91731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2010100 1064100 946070 0 0 0 2010100 1064100 946070 0 0 0 0 0 0 0 0 0 0 0 0 31572 4345 33199 165151 166182 166182 1 SSDIVSSVR FKQRHSYPERLVRSRSSDIVSSVRRPMSDP RLVRSRSSDIVSSVRRPMSDPSWNRRPGNE R S S V R R 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 2 0 0 9 0 948.48762 Q14C86;F8W9S7;C9IZ08;H0Y7I9;H0Y4E7 Q14C86 902 910 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.0054678 71.379 By MS/MS 1 1.3709 1.1397 NaN 1 Median NaN NaN NaN 0 0 Median 1.3709 1.1397 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292700 479760 812930 0 0 0 1292700 479760 812930 0 0 0 0 0 0 0 0 0 0 0 0 31573 2907 33200 165152 166183 166183 1 SSDNKLEETLTR KKSKRVSSLDTSTHKSSDNKLEETLTREQK THKSSDNKLEETLTREQKEGAFSNFPISEE K S S T R E 0 1 1 1 0 0 2 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 12 1 1391.6892 Q9BQ39;A0A087WVC1 Q9BQ39 121 132 DDX50 ATP-dependent RNA helicase DDX50 yes no 2;3 2.0341E-05 104.43 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1.2541 1.2083 30.263 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88758 0.96638 39.237 2 0 Median 1.8796 1.7983 NaN 1 1 Median 1.1592 1.2749 19.327 2 1 Median 1.31 1.1447 NaN 1 1 Median 35946000 16282000 19664000 0 0 0 0 0 0 17239000 7811600 9427000 878410 314080 564330 16638000 7568000 9070200 1191000 588610 602370 31574 3781 33201 165153;165154;165155;165156;165157;165158;165159 166184;166185;166186;166187;166188;166189;166190 166187 7 SSDQPLTVPVSPK HKANPIRKYQGLEIKSSDQPLTVPVSPKFS IKSSDQPLTVPVSPKFSTRFHC________ K S S P K F 0 0 0 1 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 2 0 0 13 0 1353.714 Q9ULW0 Q9ULW0 728 740 TPX2 Targeting protein for Xklp2 yes yes 2 0.0003807 74.944 By matching By MS/MS 1 1 0.66242 0.64618 26.594 2 Median NaN NaN NaN 0 0 Median 0.61742 0.53541 NaN 1 0 Median 0.7107 0.77987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7789100 4150600 3638500 0 0 0 715100 359120 355980 7074000 3791500 3282500 0 0 0 0 0 0 0 0 0 31575 4330 33202 165160;165161 166191 166191 1 SSDTNIFDSNVPSNK LDKLRSVTTEPSSLKSSDTNIFDSNVPSNK SSDTNIFDSNVPSNKSNFSRGDERRHEAAV K S S N K S 0 0 3 2 0 0 0 0 0 1 0 1 0 1 1 4 1 0 0 1 0 0 15 0 1623.7376 Q6PJT7;G3V256;G3V3Y4;A0A3B3IT62;G3V240;G3V572;G3V3R9;G3V473 Q6PJT7 85 99 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 2 0.00015608 68.132 By MS/MS By MS/MS 1 1 0.60226 0.63472 18.522 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67364 0.72354 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.53844 0.5568 NaN 1 1 Median NaN NaN NaN 0 0 Median 6872500 4958500 1914000 0 0 0 0 0 0 2321600 1531800 789770 0 0 0 4550900 3426700 1124200 0 0 0 31576 3175 33203 165162;165163 166192;166193 166193 2 SSDVSWSDTRR EAIQNFKALLSDMVRSSDVSWSDTRRTLRK DMVRSSDVSWSDTRRTLRKDHRWESGSLLE R S S R R T 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 4 1 1 0 1 0 0 11 1 1294.5902 O14776;G3V220 O14776 913 923 TCERG1 Transcription elongation regulator 1 yes no 2;3 0.00010116 79.906 By MS/MS By MS/MS 2 1 0.99588 1.2112 12.66 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89326 1.0864 15.379 2 0 Median 1.2416 1.2155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5095700 2521000 2574700 0 0 0 0 0 0 4457300 2150800 2306500 638350 370160 268190 0 0 0 0 0 0 31577 1494 33204 165164;165165;165166 166194;166195;166196;166197 166194 4 SSEAVIWEVLR LLMVLLSIIFMNGNRSSEAVIWEVLRKLGL NGNRSSEAVIWEVLRKLGLRPGIHHSLFGD R S S L R K 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 1 0 2 0 0 11 0 1287.6823 Q9UNF1;Q5H909;Q5H907 Q9UNF1 386 396 MAGED2 Melanoma-associated antigen D2 yes no 2 0.00015911 114.5 By matching By MS/MS By matching By matching By MS/MS 1 1 2 2 3 1.123 1.0322 17.273 9 Median 1.0417 1.0322 NaN 1 0 Median 1.1571 1.0013 NaN 1 0 Median 1.1612 1.2089 1.2311 2 0 Median 1.365 1.1368 10.92 2 0 Median NaN NaN NaN 0 0 Median 0.95544 0.82147 13.376 3 0 Median 20509000 9334500 11175000 1652200 795970 856180 8231600 3345000 4886600 3611100 1789700 1821400 494460 235510 258950 0 0 0 6519900 3168300 3351600 31578 4343 33205 165167;165168;165169;165170;165171;165172;165173;165174;165175 166198;166199;166200 166198 3 SSEAVIWEVLRK LLMVLLSIIFMNGNRSSEAVIWEVLRKLGL GNRSSEAVIWEVLRKLGLRPGIHHSLFGDV R S S R K L 1 1 0 0 0 0 2 0 0 1 1 1 0 0 0 2 0 1 0 2 0 0 12 1 1415.7773 Q9UNF1;Q5H909;Q5H907 Q9UNF1 386 397 MAGED2 Melanoma-associated antigen D2 yes no 2 4.9261E-05 105.4 By MS/MS 1 0.99377 1.0185 NaN 1 Median 0.99377 1.0185 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3304900 1482400 1822500 3304900 1482400 1822500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31579 4343 33206 165176 166201 166201 1 SSEEIESAFR EYMAFMISRETENVKSSEEIESAFRALSSE TENVKSSEEIESAFRALSSEGKPYVTKEEL K S S F R A 1 1 0 0 0 0 3 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 10 0 1153.5251 A0A0D9SF54;A0A0D9SFH4;Q13813 Q13813 2405 2414 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 6.2523E-07 157.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 1 3 0.99196 0.88625 28.622 12 Median 0.59345 0.56028 NaN 1 0 Median 1.423 1.1962 42.106 2 0 Median 0.7622 0.85005 30.875 3 0 Median 1.0599 0.9293 7.0104 2 0 Median 0.88261 0.90662 NaN 1 0 Median 1.0252 0.8538 22.464 3 0 Median 126250000 64590000 61659000 6689200 4242300 2446800 27332000 12134000 15197000 61209000 32936000 28273000 16125000 7640000 8485000 11370000 5843700 5525900 3524900 1793500 1731400 31580 264;2838 33207 165177;165178;165179;165180;165181;165182;165183;165184;165185;165186;165187;165188 166202;166203;166204;166205;166206;166207;166208;166209;166210;166211;166212;166213 166205 11 SSEELLSALQK MTQEQIQKEYDALVKSSEELLSALQKKKQQ ALVKSSEELLSALQKKKQQEEEAERLRRIQ K S S Q K K 1 0 0 0 0 1 2 0 0 0 3 1 0 0 0 3 0 0 0 0 0 0 11 0 1203.6347 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75 A0A0A0MRM8 905 915 MYO6 Unconventional myosin-VI yes no 2 0.0034745 72.643 By MS/MS 1 1.0462 1.0149 NaN 1 Median 1.0462 1.0149 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8079100 4465700 3613500 8079100 4465700 3613500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31581 164 33208 165189 166214 166214 1 SSEHINEGETAMLVCK ANIQLHGPPRVKAVKSSEHINEGETAMLVC SEHINEGETAMLVCKSESVPPVTDWAWYKI K S S C K S 1 0 1 0 1 0 3 1 1 1 1 1 1 0 0 2 1 0 0 1 0 0 16 0 1803.8131 P35613;A0A087WUV8;A0A087X2B5;I3L192;R4GMX5;R4GN83 P35613 228 243 BSG Basigin yes no 3 0.00046005 38.028 By MS/MS 1 1.2622 1.0778 NaN 1 Median NaN NaN NaN 0 0 Median 1.2622 1.0778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3123600 1129800 1993800 0 0 0 3123600 1129800 1993800 0 0 0 0 0 0 0 0 0 0 0 0 31582 2249 33209 165190 166215 166215 1 SSEIEQAVQSLDR ERAQGVVLKVLTNFKSSEIEQAVQSLDRNG FKSSEIEQAVQSLDRNGVDLLMKYIYKGFE K S S D R N 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 3 0 0 0 1 0 0 13 0 1460.7107 Q9BPX5 Q9BPX5 90 102 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 2 4.8234E-07 150.1 By MS/MS By MS/MS 1 1 1.1384 1.0149 4.8441 2 Median 1.0968 1.0502 NaN 1 0 Median 1.1816 0.98069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27960000 13647000 14314000 25621000 12605000 13016000 2339900 1041900 1298000 0 0 0 0 0 0 0 0 0 0 0 0 31583 3779 33210 165191;165192 166216;166217;166218;166219 166216 4 SSELEQYLQR EKLIRQQMEEQVAQKSSELEQYLQRVRELE QVAQKSSELEQYLQRVRELEDMYLKLQEAL K S S Q R V 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 10 0 1251.6095 Q9UH65;E7EMB1 Q9UH65 409 418 SWAP70 Switch-associated protein 70 yes no 2 1.1384E-11 141.39 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31584 4270 33211 165193;165194 166220;166221 166220 2 SSELLGQAAR TDVIALTKQVLKGSRSSELLGQAARNMVLQ LKGSRSSELLGQAARNMVLQEDAILHSEDS R S S A R N 2 1 0 0 0 1 1 1 0 0 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1030.5407 A0A0B4J1R7;Q96B45 A0A0B4J1R7 45 54 C10orf32-ASMT;C10orf32 UPF0693 protein C10orf32 yes no 2 0.0013183 85.064 By MS/MS 2 1.1968 1.1677 NaN 1 Median 1.1968 1.1677 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3246900 1486800 1760200 3246900 1486800 1760200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31585 210 33212 165195;165196 166222;166223 166222 2 SSELQAIK RSTAVTTSSAKIKLKSSELQAIKTELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS K S S I K T 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 8 0 874.476 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 184 191 RALY RNA-binding protein Raly yes no 2 0.0024054 117.93 By MS/MS By MS/MS 1 2 1.1836 1.0672 8.3772 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0054 1.0058 NaN 1 0 Median 1.3933 1.1323 NaN 1 0 Median 15515000 7118200 8396500 0 0 0 0 0 0 0 0 0 0 0 0 8926200 4414200 4512000 6588400 2704000 3884400 31586 4313 33213 165197;165198;165199 166224;166225;166226;166227;166228 166227 5 SSELQAIKTELTQIK RSTAVTTSSAKIKLKSSELQAIKTELTQIK SSELQAIKTELTQIKSNIDALLSRLEQIAA K S S I K S 1 0 0 0 0 2 2 0 0 2 2 2 0 0 0 2 2 0 0 0 0 0 15 1 1687.9356 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 184 198 RALY RNA-binding protein Raly yes no 3 0.00010543 52.823 By MS/MS By matching 1 1 1.0408 0.98884 10.194 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0041 1.0628 NaN 1 0 Median 1.0788 0.92007 NaN 1 0 Median 14508000 6730200 7778200 0 0 0 0 0 0 0 0 0 0 0 0 13363000 6222000 7141400 1144900 508180 636760 31587 4313 33214 165200;165201 166229;166230 166230 2 SSEMNVLIPTEGGDFNEFPVPEQFK YLSKNSLDCEIVSAKSSEMNVLIPTEGGDF EGGDFNEFPVPEQFKTLWNGQKLVTTVTEI K S S F K T 0 0 2 1 0 1 4 2 0 1 1 1 1 3 3 2 1 0 0 2 0 0 25 0 2810.3109 Q01518 Q01518 434 458 CAP1 Adenylyl cyclase-associated protein 1 yes yes 3 0.031265 11.966 By MS/MS By matching 1 1 0.6322 0.58419 19.741 2 Median 0.6939 0.6717 NaN 1 0 Median 0.57598 0.50808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2136100 1223100 913010 1410000 801220 608760 726140 421890 304250 0 0 0 0 0 0 0 0 0 0 0 0 31588 2686 33215 165202;165203 166231;166232 166231 2 SSENGALPVVSVVR RHGYIFSSLAGCLMKSSENGALPVVSVVRE KSSENGALPVVSVVRETESQLLPDVGAIVT K S S V R E 1 1 1 0 0 0 1 1 0 0 1 0 0 0 1 3 0 0 0 4 0 0 14 0 1412.7623 Q9Y3B2;R4GNH9;R4GMQ7;B1AMU7;B1AMU4 Q9Y3B2 44 57 EXOSC1 Exosome complex component CSL4 yes no 2 0.00016133 79.82 By MS/MS By MS/MS By MS/MS 1 2 2 1.168 0.96608 37.143 5 Median 0.61815 0.58624 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3566 1.3709 2.878 2 0 Median 1.0154 0.85757 16.849 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34307000 17952000 16355000 11837000 7955100 3881500 0 0 0 20727000 9173200 11553000 1743600 823600 920000 0 0 0 0 0 0 31589 4414 33216 165204;165205;165206;165207;165208 166233;166234;166235 166234 3 SSENILTVHEQANVESLKETK PNFYNNDFDDDFSHRSSENILTVHEQANVE TVHEQANVESLKETKQNCKDLDEDANGITD R S S T K Q 1 0 2 0 0 1 4 0 1 1 2 2 0 0 0 3 2 0 0 2 0 0 21 1 2355.1918 Q5QJE6;J3KP30 Q5QJE6 273 293 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes no 3 5.2869E-12 72.015 By MS/MS By matching 2 1 1.0302 1.0546 5.4435 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0045 1.0975 6.9763 2 0 Median 1.1606 1.0546 NaN 1 0 Median 20586000 9811300 10774000 0 0 0 0 0 0 0 0 0 0 0 0 20217000 9635800 10581000 368850 175460 193380 31590 3067 33217 165209;165210;165211 166236 166236 1 SSENPNEVFR EFFLHLINMVERNCRSSENPNEVFRFLVEE ERNCRSSENPNEVFRFLVEEKIKCLATEKV R S S F R F 0 1 2 0 0 0 2 0 0 0 0 0 0 1 1 2 0 0 0 1 0 0 10 0 1177.5364 P45974 P45974 453 462 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0007323 99.802 By MS/MS By MS/MS 1 2 0.94744 0.80715 10.24 2 Median NaN NaN NaN 0 0 Median 0.94744 0.80715 10.24 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13108000 6707200 6400700 0 0 0 13108000 6707200 6400700 0 0 0 0 0 0 0 0 0 0 0 0 31591 2332 33218 165212;165213;165214 166237;166238;166239 166239 3 SSEPVQLTEAETEYFVR LAAIPEFLNIGPLFKSSEPVQLTEAETEYF EPVQLTEAETEYFVRCIKHMFTNHIVFQFD K S S V R C 1 1 0 0 0 1 4 0 0 0 1 0 0 1 1 2 2 0 1 2 0 0 17 0 1983.9426 Q9UBF2 Q9UBF2 630 646 COPG2 Coatomer subunit gamma-2 yes yes 2 3.1455E-05 52.555 By MS/MS By matching 1 1 0.82461 0.77606 2.8868 2 Median 0.78675 0.76038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86429 0.79207 NaN 1 0 Median 3885200 2156300 1728900 3788300 2114300 1674000 0 0 0 0 0 0 0 0 0 0 0 0 96852 41992 54860 31592 4238 33219 165215;165216 166240;166241 166240 2 SSEQILATLK ILTGGADKNVVVFDKSSEQILATLKGHTKK VVFDKSSEQILATLKGHTKKVTSVVFHPSQ K S S L K G 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1088.6077 Q9UMS4 Q9UMS4 252 261 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 4.4964E-05 138.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 1.1435 1.0869 28.334 9 Median 1.2637 1.1651 NaN 1 0 Median 1.2135 1.0375 0.28762 2 0 Median 0.99895 0.9578 7.7332 3 0 Median NaN NaN NaN 0 0 Median 1.1435 1.0923 45.457 3 0 Median NaN NaN NaN 0 0 Median 216180000 102380000 113800000 26601000 11151000 15450000 23300000 10213000 13087000 143700000 71196000 72509000 0 0 0 22571000 9817600 12754000 0 0 0 31593 4334 33220 165217;165218;165219;165220;165221;165222;165223;165224;165225 166242;166243;166244;166245;166246;166247;166248;166249;166250;166251;166252 166245 11 SSESELCIETPK TRHWVIRSLLSILQRSSESELCIETPKLTT LQRSSESELCIETPKLTTSEEKGKKSSKSC R S S P K L 0 0 0 0 1 0 3 0 0 1 1 1 0 0 1 3 1 0 0 0 0 0 12 0 1378.6286 Q7Z6Z7;H0Y659 Q7Z6Z7 3233 3244 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.00089741 59.542 By MS/MS 1 0.80681 0.70396 NaN 1 Median NaN NaN NaN 0 0 Median 0.80681 0.70396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5069100 2791600 2277600 0 0 0 5069100 2791600 2277600 0 0 0 0 0 0 0 0 0 0 0 0 31594 3253 33221 165226 166253 166253 1 SSEVFTTFK LYTEKFEEFQNTLSKSSEVFTTFKQEMEKM QNTLSKSSEVFTTFKQEMEKMTKKIKKLEK K S S F K Q 0 0 0 0 0 0 1 0 0 0 0 1 0 2 0 2 2 0 0 1 0 0 9 0 1044.5128 P40222 P40222 404 412 TXLNA Alpha-taxilin yes yes 2 0.027535 51.066 By MS/MS 1 1.2158 1.0376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2158 1.0376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1829300 725050 1104300 0 0 0 0 0 0 0 0 0 1829300 725050 1104300 0 0 0 0 0 0 31595 2284 33222 165227 166254 166254 1 SSFADISNLLQIEPR FYRRAQAHKALKDYKSSFADISNLLQIEPR SSFADISNLLQIEPRNGPAQKLRQEVKQNL K S S P R N 1 1 1 1 0 1 1 0 0 2 2 0 0 1 1 3 0 0 0 0 0 0 15 0 1688.8733 Q15785 Q15785 279 293 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 4.6488E-10 108.56 By MS/MS By matching By MS/MS 1 1 1 1.2189 0.98873 29.547 3 Median NaN NaN NaN 0 0 Median 0.81362 0.67655 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3602 1.2108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2189 0.98873 NaN 1 0 Median 24394000 11168000 13226000 0 0 0 22075000 10118000 11957000 0 0 0 136700 60366 76334 0 0 0 2182500 990210 1192300 31596 2971 33223 165228;165229;165230 166255;166256;166257 166255 3 SSFANVAAATPAIK AVGKQPAPRNLVPKKSSFANVAAATPAIKK KSSFANVAAATPAIKKPPSGFKGTIPKRPW K S S I K K 5 0 1 0 0 0 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 14 0 1346.7194 Q9BTC0 Q9BTC0 571 584 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0040775 56.205 By MS/MS 1 4.2493 4.5511 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.2493 4.5511 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8267000 1983700 6283300 0 0 0 0 0 0 8267000 1983700 6283300 0 0 0 0 0 0 0 0 0 31597 3824 33224 165231 166258 166258 1 SSFDEMLPGTHFQR IIFTPKSLLRHPEARSSFDEMLPGTHFQRV RSSFDEMLPGTHFQRVIPEDGPAAQNPENV R S S Q R V 0 1 0 1 0 1 1 1 1 0 1 0 1 2 1 2 1 0 0 0 0 0 14 0 1650.746 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 881 894 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 3 0.031539 18.096 By MS/MS By matching 1 1 1.5271 1.5523 79.901 2 Median 0.91246 0.88225 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5558 2.7311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7613000 3321900 4291100 5638800 2615500 3023300 0 0 0 1974200 706450 1267800 0 0 0 0 0 0 0 0 0 31598 912 33225 165232;165233 166259 166259 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK QQQHDFTLTQTADGRSSFDWLTGSSTDPLV DHTSPSSDSLLFAHKRSERLQRAPLKSVGP R S S H K R 1 0 0 4 0 0 0 1 2 0 4 1 0 2 2 8 3 1 0 1 0 0 30 0 3233.5153 P78527 P78527 2654 2683 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3;4 3.4609E-14 53.259 By MS/MS By matching By MS/MS 4 2 1 0.66906 0.6702 12.403 7 Median 0.66712 0.66721 6.0141 4 0 Linear 0.86214 0.76127 15.296 2 0 Median 0.68054 0.75722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49888000 28230000 21659000 29043000 17484000 11559000 14561000 7084400 7476900 6283500 3661000 2622500 0 0 0 0 0 0 0 0 0 31599 2647 33226 165234;165235;165236;165237;165238;165239;165240 166260;166261;166262;166263;166264;166265;166266 166263 7 SSFFIEPQKPVFPETR ESQKSSRGGSPDLWKSSFFIEPQKPVFPET SFFIEPQKPVFPETRKPGPSGPSESPKAAS K S S T R K 0 1 0 0 0 1 2 0 0 1 0 1 0 3 3 2 1 0 0 1 0 0 16 1 1907.9781 Q96JM3 Q96JM3 482 497 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 3 0.00021376 43.798 By MS/MS By MS/MS By matching 1 1 1 0.48282 0.53096 28.254 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50258 0.57096 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48282 0.53096 NaN 1 0 Median 0.31191 0.3389 NaN 1 0 Median 9781000 7116000 2665000 0 0 0 0 0 0 3375400 2346500 1028900 0 0 0 6147300 4573400 1573900 258360 196230 62131 31600 3687 33227 165241;165242;165243 166267;166268 166268 2 SSFFSDR DAYSSFGSRSDSRGKSSFFSDRGSGSRGRF SRSDSRGKSSFFSDRGSGSRGRFDDRGRSD K S S D R G 0 1 0 1 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 0 0 0 7 0 844.37153 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09 A0A2U3TZJ9 81 87 DDX3X ATP-dependent RNA helicase DDX3X yes no 2 0.012003 79.116 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 2 1 3 1.1879 1.0836 23.755 10 Median 1.1843 1.1611 0.053156 2 0 Median 1.0818 0.93552 NaN 1 0 Median 1.4568 1.4871 NaN 1 0 Median 1.3113 1.0728 11.736 2 0 Median 1.494 1.5787 NaN 1 0 Median 1.1277 0.97118 21.056 3 0 Median 37947000 16776000 21171000 7019600 3118000 3901600 13863000 6324600 7538900 9224700 3830300 5394400 1002600 438610 564000 3367900 1388000 1979800 3469100 1676300 1792800 31601 263 33228 165244;165245;165246;165247;165248;165249;165250;165251;165252;165253 166269;166270;166271;166272;166273;166274;166275;166276;166277 166275 9 SSFLASLNPK VDNQAKSPTTTQSPKSSFLASLNPKTWGRL TQSPKSSFLASLNPKTWGRLSTQSNSNNIE K S S P K T 1 0 1 0 0 0 0 0 0 0 2 1 0 1 1 3 0 0 0 0 0 0 10 0 1062.571 Q14669 Q14669 1039 1048 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0011347 68.224 By matching By MS/MS By matching 1 1 1 1.211 1.0992 21.631 3 Median 1.303 1.2573 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74037 0.82337 NaN 1 0 Median 1.211 1.0992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23054000 11104000 11950000 14972000 6269200 8702900 0 0 0 6502500 4143900 2358700 1579100 690730 888370 0 0 0 0 0 0 31602 2886 33229 165254;165255;165256 166278 166278 1 SSFLPSYIIDVR SLAEEHEGLVGEGQRSSFLPSYIIDVRALD GQRSSFLPSYIIDVRALDEKLLNIIDLQFL R S S V R A 0 1 0 1 0 0 0 0 0 2 1 0 0 1 1 3 0 0 1 1 0 0 12 0 1395.7398 Q10570 Q10570 183 194 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0095072 37.476 By MS/MS By MS/MS By MS/MS 1 3 1 0.95621 0.96117 10.93 5 Median 0.95621 0.96117 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87953 0.95916 14.743 3 0 Median 1.1887 1.047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22970000 11861000 11109000 1405900 752170 653730 0 0 0 20842000 10779000 10063000 722560 330520 392030 0 0 0 0 0 0 31603 2753 33230 165257;165258;165259;165260;165261 166279;166280;166281;166282;166283;166284;166285;166286;166287 166287 9 SSFLQVFNNSPDESSYYR ETFSLYPQFMFHLRRSSFLQVFNNSPDESS LQVFNNSPDESSYYRHHFMRQDLTQSLIMI R S S Y R H 0 1 2 1 0 1 1 0 0 0 1 0 0 2 1 5 0 0 2 1 0 0 18 0 2138.9545 F5H365;Q15436 F5H365 558 575 SEC23A Protein transport protein Sec23A yes no 2 2.0376E-06 82.362 By MS/MS By MS/MS By matching 1 1 1 0.89922 0.91493 11.957 3 Median 0.89922 0.86253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85451 0.91493 NaN 1 0 Median 1.3011 1.0858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7395500 3757000 3638500 4719400 2360300 2359100 0 0 0 2460100 1294400 1165600 215990 102320 113680 0 0 0 0 0 0 31604 1029 33231 165262;165263;165264 166288;166289;166290 166289 3 SSFLVDCSK TSKGAGLSKAFVGQKSSFLVDCSKAGSNML AFVGQKSSFLVDCSKAGSNMLLIGVHGPTT K S S S K A 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 3 0 0 0 1 0 0 9 0 1041.4801 O75369;E7EN95;A0A0A0MT44 O75369 2531 2539 FLNB Filamin-B yes no 2 0.033194 35.511 By MS/MS 1 1.2233 1.0691 NaN 1 Median NaN NaN NaN 0 0 Median 1.2233 1.0691 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5683500 2009400 3674100 0 0 0 5683500 2009400 3674100 0 0 0 0 0 0 0 0 0 0 0 0 31605 1664 33232 165265 166291 166291 1 SSFNLGTIETK STPAPANTIVTSENKSSFNLGTIETKSASV SENKSSFNLGTIETKSASVAPFTCKTSEAK K S S T K S 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 2 2 0 0 0 0 0 11 0 1195.6085 P49790 P49790 1046 1056 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.00013748 85.533 By MS/MS 2 1.2268 1.3357 7.55 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2268 1.3357 7.55 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26969000 12469000 14500000 0 0 0 0 0 0 26969000 12469000 14500000 0 0 0 0 0 0 0 0 0 31606 2400 33233 165266;165267 166292;166293;166294 166292 3 SSFSHYSGLK SRGKREFDRHSGSDRSSFSHYSGLKHEDKR SGSDRSSFSHYSGLKHEDKRGGSGSHNWGT R S S L K H 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 4 0 0 1 0 0 0 10 0 1111.5298 Q8NC51 Q8NC51 202 211 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.00039409 78.516 By MS/MS 1 1.2935 1.11 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2935 1.11 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259500 1392400 1867100 0 0 0 0 0 0 0 0 0 3259500 1392400 1867100 0 0 0 0 0 0 31607 3414 33234 165268 166295;166296 166296 2 SSFSITR SRDKLGAKGDFPTGKSSFSITREAQVNVRM KGDFPTGKSSFSITREAQVNVRMDSFDEDL K S S T R E 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 1 0 0 0 0 0 7 0 796.40792 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 559 565 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.028142 67.032 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2653400 0 2653400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2653400 0 2653400 31608 439 33235 165269;165270 166297;166298 166297 2 SSFTVDCSK VAKGLGLSKAYVGQKSSFTVDCSKAGNNML AYVGQKSSFTVDCSKAGNNMLLVGVHGPRT K S S S K A 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 3 1 0 0 1 0 0 9 0 1029.4437 P21333;Q60FE5;A0A087WWY3 P21333 2576 2584 FLNA Filamin-A no no 2 0.022753 38.303 By MS/MS 1 1.0544 0.91889 NaN 1 Median NaN NaN NaN 0 0 Median 1.0544 0.91889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3373800 1697500 1676200 0 0 0 3373800 1697500 1676200 0 0 0 0 0 0 0 0 0 0 0 0 31609 2088;3120 33236 165271 166299;166300 166299 2 SSFYPDGGDQETAK TIAPQNAPRDESRGRSSFYPDGGDQETAKT RSSFYPDGGDQETAKTGKFLKRFTDEESRV R S S A K T 1 0 0 2 0 1 1 2 0 0 0 1 0 1 1 2 1 0 1 0 0 0 14 0 1500.6369 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7;H0YF00 Q9NYF8 319 332 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.00062612 65.395 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1 0.6442 0.65618 16.985 6 Median 0.56194 0.54888 NaN 1 0 Median 0.78243 0.66813 NaN 1 0 Median 0.57076 0.61704 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6442 0.6665 4.7595 2 1 Median 1.0997 0.91247 NaN 1 0 Median 30588000 18346000 12242000 4732600 2924200 1808400 5122300 3079200 2043100 2659800 1692100 967720 0 0 0 16961000 10097000 6864500 1112100 553950 558110 31610 4175 33237 165272;165273;165274;165275;165276;165277 166301;166302;166303;166304;166305;166306 166303 6 SSFYSLTSSNISK SSDLTLSSVLWDRERSSFYSLTSSNISKWE ERSSFYSLTSSNISKWELDDSSEKHAYSWD R S S S K W 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 6 1 0 1 0 0 0 13 0 1419.6882 Q8WUM0 Q8WUM0 284 296 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00013331 133.44 By matching By MS/MS 1 1 1.3984 1.3482 13.392 2 Median NaN NaN NaN 0 0 Median 1.7007 1.4821 NaN 1 0 Median 1.1498 1.2264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20949000 9303100 11646000 0 0 0 2864600 1050400 1814200 18085000 8252600 9831900 0 0 0 0 0 0 0 0 0 31611 3492 33238 165278;165279 166307;166308 166308 2 SSFYSLTSSNISKWELDDSSEK SSDLTLSSVLWDRERSSFYSLTSSNISKWE SSNISKWELDDSSEKHAYSWDINRALKENI R S S E K H 0 0 1 2 0 0 2 0 0 1 2 2 0 1 0 8 1 1 1 0 0 0 22 1 2509.1496 Q8WUM0 Q8WUM0 284 305 NUP133 Nuclear pore complex protein Nup133 yes yes 3 3.2939E-05 52.853 By MS/MS 2 1.0506 1.2024 0.38042 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0506 1.2024 0.38042 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7167300 3629500 3537800 0 0 0 0 0 0 7167300 3629500 3537800 0 0 0 0 0 0 0 0 0 31612 3492 33239 165280;165281 166309;166310 166310 2 SSFYVNGLTLGGQK NITPAEVGVLVGKDRSSFYVNGLTLGGQKC RSSFYVNGLTLGGQKCSVIRDSLLQDGEFS R S S Q K C 0 0 1 0 0 1 0 3 0 0 2 1 0 1 0 2 1 0 1 1 0 0 14 0 1469.7514 P07737;K7EJ44;I3L3D5 P07737 57 70 PFN1 Profilin-1 yes no 2;3 2.5064E-20 153.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 2 1 1 1.1933 1.0388 26.133 13 Median 1.1442 1.0268 3.8205 4 2 Median 1.257 1.0447 2.8594 5 2 Median 1.0935 1.0659 3.6413 2 0 Median 1.1933 0.96238 NaN 1 0 Median 2.4902 2.632 NaN 1 0 Median NaN NaN NaN 0 0 Median 2260600000 1072800000 1187800000 1715800000 827740000 888020000 441310000 196510000 244810000 97061000 45971000 51090000 5340700 2218800 3121900 1096500 361340 735150 0 0 0 31613 1889 33240 165282;165283;165284;165285;165286;165287;165288;165289;165290;165291;165292;165293;165294 166311;166312;166313;166314;166315;166316;166317;166318;166319;166320;166321;166322;166323;166324;166325;166326;166327;166328;166329 166326 19 SSGASASALQR ______________________________ ______________________________ M S S Q R L 3 1 0 0 0 1 0 1 0 0 1 0 0 0 0 4 0 0 0 0 0 0 11 0 1033.5152 P50151 P50151 2 12 GNG10 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10 yes yes 2 0.0023254 54.416 By MS/MS By matching By matching By matching 1 1 1 1 1.0246 0.92113 24.78 4 Median 1.0114 0.95012 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3534 1.353 NaN 1 0 Median 1.038 0.74965 NaN 1 0 Median 0.9376 0.89303 NaN 1 0 Median NaN NaN NaN 0 0 Median 9293400 4489600 4803800 1550700 819340 731350 0 0 0 981280 415150 566130 422550 220750 201800 6338900 3034400 3304500 0 0 0 31614 2408 33241 165295;165296;165297;165298 166330 166330 1 SSGASVTTQPTEFK PAEVDPDTILKALFKSSGASVTTQPTEFKI KSSGASVTTQPTEFKIKL____________ K S S F K I 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 3 3 0 0 1 0 0 14 0 1438.694 F6VRR5;Q9BY77 F6VRR5 422 435 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 1.4116E-19 149.96 By MS/MS By MS/MS 1 2 0.90176 0.82258 4.0305 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8574 0.82258 NaN 1 0 Median 0.95929 0.84315 5.3315 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52233000 27511000 24721000 0 0 0 0 0 0 29124000 15513000 13611000 23109000 11998000 11111000 0 0 0 0 0 0 31615 1051 33242 165299;165300;165301 166331;166332;166333 166333 3 SSGCDVNLPGVNVK GVQGLEGNLQMPGIKSSGCDVNLPGVNVKL KSSGCDVNLPGVNVKLPTGQISGPEIKGGL K S S V K L 0 0 2 1 1 0 0 2 0 0 1 1 0 0 1 2 0 0 0 3 0 0 14 0 1444.698 Q09666 Q09666 5499 5512 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00024752 77.662 By MS/MS 1 1.1021 1.1833 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1021 1.1833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6396500 3481800 2914600 0 0 0 0 0 0 6396500 3481800 2914600 0 0 0 0 0 0 0 0 0 31616 2749 33243 165302 166334 166334 1 SSGEIVYCGQVFEK SRFWYFVSQLKKMKKSSGEIVYCGQVFEKS KSSGEIVYCGQVFEKSPLRVKNFGIWLRYD K S S E K S 0 0 0 0 1 1 2 2 0 1 0 1 0 1 0 2 0 0 1 2 0 0 14 0 1601.7396 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 28 41 RPL18A 60S ribosomal protein L18a yes no 2 0.00065825 64.55 By MS/MS By MS/MS By matching 1 1 1 1.1681 1.0874 14.761 3 Median 1.1681 1.0874 NaN 1 0 Median 1.1081 0.93286 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5202 1.2531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11980000 5334800 6644800 7496000 3462100 4033800 4009300 1672900 2336400 0 0 0 474410 199820 274590 0 0 0 0 0 0 31617 1433 33244 165303;165304;165305 166335;166336;166337 166335 3 SSGFPVHLLPDIAEPGSVAGR YFNTQSQSWNVETLRSSGFPVHLLPDIAEP HLLPDIAEPGSVAGRTSHMWFEIPKGTQVG R S S G R T 2 1 0 1 0 0 1 3 1 1 2 0 0 1 3 3 0 0 0 2 0 0 21 0 2105.0906 A0A0B4J2A0;Q9UHJ6 A0A0B4J2A0 219 239 TRPV1;SHPK Sedoheptulokinase yes no 3 0.0094286 20.814 By MS/MS By matching By matching 1 1 1 0.91158 0.81314 34.229 3 Median 0.51668 0.51547 NaN 1 0 Median 0.91158 0.81314 NaN 1 0 Median 1.0164 1.0076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4411600 2820700 1590900 3007400 1978700 1028700 215280 113550 101720 1188900 728470 460460 0 0 0 0 0 0 0 0 0 31618 219 33245 165306;165307;165308 166338;166339 166338 2 SSGGREDLESSGLQR PEENQASWAKSAGAKSSGGREDLESSGLQR SSGGREDLESSGLQRRNSSEASSGDFLDLK K S S Q R R 0 2 0 1 0 1 2 3 0 0 2 0 0 0 0 4 0 0 0 0 0 0 15 1 1576.7441 J3KSH8;J3KT51;Q9UK76 J3KSH8 24 38 HN1 Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed yes no 3 0.015077 23.481 By MS/MS By MS/MS 2 1 1.1402 1.2188 20.765 3 Median 0.99613 1.0544 20.487 2 1 Median 1.4914 1.3643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5397400 2501600 2895800 4599600 2154000 2445600 797830 347640 450180 0 0 0 0 0 0 0 0 0 0 0 0 31619 1331 33246 165309;165310;165311 166340;166341;166342 166341 3 SSGGSEHSTEGSVSLGDGQLNR MGRPFQKNRVKPQFRSSGGSEHSTEGSVSL STEGSVSLGDGQLNRYSSRNFPAERHNPTV R S S N R Y 0 1 1 1 0 1 2 5 1 0 2 0 0 0 0 6 1 0 0 1 0 0 22 0 2159.9679 Q71RC2;Q96J85;X6RLN4 Q71RC2 381 402 LARP4 La-related protein 4 yes no 3 7.4706E-07 40.81 By MS/MS By MS/MS 1 2 1.2684 1.1253 25.948 3 Median 1.2684 1.2447 NaN 1 0 Median 1.0612 0.92571 27.609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6076400 2800000 3276300 2490600 1045600 1445000 3585700 1754400 1831300 0 0 0 0 0 0 0 0 0 0 0 0 31620 3211 33247 165312;165313;165314 166343;166344;166345 166345 3 SSGGSGGGPLSHFYSGSPTSYFTSGLQAGLK SRHKMSPPPSGFGERSSGGSGGGPLSHFYS SPTSYFTSGLQAGLKQSHLSKAIGSSPLGS R S S L K Q 1 0 0 0 0 1 0 8 1 0 3 1 0 2 2 8 2 0 2 0 0 0 31 0 2990.4046 A0A087WZ13;E9PAU2;K7EQG2 A0A087WZ13 627 657 RAVER1 yes no 3 3.0324E-05 28.042 By matching By MS/MS 1 1 0.78575 0.78097 63.618 2 Median 1.2797 1.2246 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48247 0.49804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7778300 5203800 2574600 413510 143820 269690 0 0 0 7364800 5060000 2304900 0 0 0 0 0 0 0 0 0 31621 90 33248 165315;165316 166346;166347 166347 2 SSGHSSSELSPDAVEK LETDPSLDMKEQSTRSSGHSSSELSPDAVE SGHSSSELSPDAVEKAGMSSNQSISSPVLD R S S E K A 1 0 0 1 0 0 2 1 1 0 1 1 0 0 1 6 0 0 0 1 0 0 16 0 1615.7326 Q9UQ35 Q9UQ35 1378 1393 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 8.9244E-05 48.216 By MS/MS By MS/MS By matching 2 2 1 0.74734 0.72332 18.14 5 Median 0.82419 0.79777 13.853 2 0 Median 0.72254 0.63103 4.9602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87111 0.92222 NaN 1 0 Median NaN NaN NaN 0 0 Median 8229900 4484300 3745500 2376200 1337200 1039100 3701500 1970400 1731000 0 0 0 0 0 0 2152200 1176700 975460 0 0 0 31622 4359 33249 165317;165318;165319;165320;165321 166348;166349;166350;166351;166352 166351 5 SSGIHVALVTGGNK ______________________________ MSSGIHVALVTGGNKGIGLAIVRDLCRLFS M S S N K G 1 0 1 0 0 0 0 3 1 1 1 1 0 0 0 2 1 0 0 2 0 0 14 0 1338.7256 P16152;E9PQ63;A8MTM1 P16152 2 15 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 2.3458E-07 160.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1.2098 1.0438 13.747 11 Median 1.1283 1.0047 17.643 4 1 Median 1.2522 1.0438 5.7686 3 0 Median 1.192 1.1642 12.38 2 0 Median 1.299 1.0742 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0549 0.84333 NaN 1 0 Median 244930000 113280000 131650000 195810000 91021000 104790000 34830000 15578000 19253000 9823700 4722200 5101400 1419700 611810 807870 0 0 0 3047300 1344500 1702800 31623 2025 33250 165322;165323;165324;165325;165326;165327;165328;165329;165330;165331;165332 166353;166354;166355;166356;166357;166358;166359;166360;166361;166362;166363;166364;166365;166366;166367 166353 15 SSGISSQNSSTSDGDR CIGSAIKSESGNSARSSGISSQNSSTSDGD SGISSQNSSTSDGDRSVSSQSSSSVSSQVT R S S D R S 0 1 1 2 0 1 0 2 0 1 0 0 0 0 0 7 1 0 0 0 0 0 16 0 1583.6659 Q9NXV6 Q9NXV6 193 208 CDKN2AIP CDKN2A-interacting protein yes yes 2 0.00013347 54.143 By MS/MS 1 1.0027 1.0735 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0027 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2509100 1235000 1274100 0 0 0 0 0 0 2509100 1235000 1274100 0 0 0 0 0 0 0 0 0 31624 4169 33251 165333 166368;166369 166368 2 SSGLPNIPVQTISR PGFPSFNHTQFPPSRSSGLPNIPVQTISRA RSSGLPNIPVQTISRAAAEKLFGNMEGDCP R S S S R A 0 1 1 0 0 1 0 1 0 2 1 0 0 0 2 3 1 0 0 1 0 0 14 0 1467.8045 P02786;G3V0E5 P02786 326 339 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.017645 28.956 By matching By matching By MS/MS 2 2 1 0.9245 0.93063 20.631 5 Median 1.0651 1.0299 14.339 2 0 Median 0.82831 0.72738 13.315 2 0 Median 0.90772 0.97319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40680000 20206000 20474000 24842000 12019000 12823000 13174000 6783200 6390700 2664700 1404200 1260500 0 0 0 0 0 0 0 0 0 31625 1836 33252 165334;165335;165336;165337;165338 166370 166370 1 SSGLTAVWVAR KDADSQNPDAPEGKRSSGLTAVWVARNRFA EGKRSSGLTAVWVARNRFAVLDRMHSLLIK R S S A R N 2 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 1 1 0 2 0 0 11 0 1145.6193 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 413 423 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00019313 95.358 By MS/MS By matching By matching By matching 3 3 1 2 0.94627 0.85652 37.306 9 Median 0.91385 0.90689 16.523 3 0 Median 1.0105 0.85652 1.5011 3 0 Median 1.0961 1.205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56875 0.47404 49.776 2 0 Median 31372000 15897000 15475000 19411000 9738600 9672200 7827400 3833300 3994100 3732400 2100500 1631900 0 0 0 0 0 0 401630 224620 177010 31626 2473 33253 165339;165340;165341;165342;165343;165344;165345;165346;165347 166371;166372 166371 2 SSGMTLDNISR RSLSAYGRRTSVRFRSSGMTLDNISRAAVD VRFRSSGMTLDNISRAAVDRIIRVDHAGEY R S S S R A 0 1 1 1 0 0 0 1 0 1 1 0 1 0 0 3 1 0 0 0 0 0 11 0 1179.5554 H3BS11;I3L1T0;H3BP28;Q99807 H3BS11 36 46 COQ7 5-demethoxyubiquinone hydroxylase, mitochondrial yes no 2 0.037568 28.797 By MS/MS By matching 1 1 1.3031 1.2886 15.851 2 Median NaN NaN NaN 0 0 Median 1.3849 1.152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2261 1.4414 NaN 1 0 Median NaN NaN NaN 0 0 Median 2855200 1079700 1775400 0 0 0 1060400 402360 658070 0 0 0 0 0 0 1794700 677370 1117400 0 0 0 31627 1219 33254 165348;165349 166373 166373 1 SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK ______________________________ HPATGTGAVQTEAMKQILGVIDKKLRNLEK K S S M K Q 11 0 0 0 0 2 2 7 1 0 0 1 1 0 6 7 3 0 0 1 0 0 42 0 3702.718 Q14444;E9PLA9 Q14444 14 55 CAPRIN1 Caprin-1 yes no 3;4 2.9285E-40 95.603 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 2 0.36319 0.32249 58.67 9 Median 0.35174 0.32249 5.632 3 2 Median 0.31834 0.27807 NaN 1 1 Median 0.36979 0.40362 111.82 3 1 Median 0.4351 0.37372 22.445 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66208000 53474000 12734000 22978000 18119000 4859500 7047600 5883200 1164400 22383000 18468000 3915500 13799000 11004000 2795000 0 0 0 0 0 0 31628 2878 33255 165350;165351;165352;165353;165354;165355;165356;165357;165358 166374;166375;166376;166377;166378;166379;166380 166378 7 SSGPTSLFAVTVAPPGAR QPQQQRGAAKEAAGKSSGPTSLFAVTVAPP PTSLFAVTVAPPGARQGQQQAGGKKKAEGG K S S A R Q 3 1 0 0 0 0 0 2 0 0 1 0 0 1 3 3 2 0 0 2 0 0 18 0 1713.905 Q00839;A0A1X7SBS1;A0A1W2PPS1;A0A1W2PP35;A0A1W2PP22 Q00839 187 204 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 2.1619E-14 128.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 5 7 10 9 0.76746 0.68215 23.653 40 Median 0.62622 0.60174 12.659 5 1 Median 0.9555 0.84653 46.666 4 0 Median 0.65846 0.69202 34.119 5 1 Median 0.82876 0.71271 14.436 7 0 Median 0.67505 0.68457 11.628 10 1 Median 0.80595 0.66898 5.4279 9 0 Median 747560000 438370000 309190000 62601000 36930000 25671000 13793000 7410700 6382400 162070000 94954000 67114000 17470000 9101400 8368900 463020000 274240000 188780000 28608000 15734000 12874000 31629 2680 33256 165359;165360;165361;165362;165363;165364;165365;165366;165367;165368;165369;165370;165371;165372;165373;165374;165375;165376;165377;165378;165379;165380;165381;165382;165383;165384;165385;165386;165387;165388;165389;165390;165391;165392;165393;165394;165395;165396;165397;165398 166381;166382;166383;166384;166385;166386;166387;166388;166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400;166401;166402;166403;166404;166405;166406;166407;166408;166409;166410;166411;166412;166413;166414;166415;166416;166417;166418;166419;166420;166421;166422;166423;166424;166425;166426;166427;166428;166429;166430;166431;166432;166433;166434;166435;166436;166437;166438;166439;166440;166441;166442;166443;166444;166445;166446;166447 166383 67 SSGPYGGGGQYFAK SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP RSSGPYGGGGQYFAKPRNQGGYGGSSSSSS R S S A K P 1 0 0 0 0 1 0 5 0 0 0 1 0 1 1 2 0 0 2 0 0 0 14 0 1374.6204 H0YH80;P09651;F8W6I7;Q32P51 P09651 337 350 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 no no 2 5.6967E-08 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 2 2 1 4 0.97899 0.83554 9.9256 12 Median 1.0951 1.0263 NaN 1 0 Median 0.99941 0.84591 3.3601 2 1 Median 0.83256 0.83203 2.2098 2 1 Median 1.0088 0.85369 7.4015 2 0 Median 0.87749 0.89321 NaN 1 0 Median 0.99811 0.81425 12.224 4 0 Median 288400000 158050000 130360000 7140100 3594300 3545800 22130000 11415000 10714000 172470000 100000000 72473000 42705000 21030000 21675000 8612100 4451500 4160600 35344000 17557000 17788000 31630 1919;1183 33257 165399;165400;165401;165402;165403;165404;165405;165406;165407;165408;165409;165410 166448;166449;166450;166451;166452;166453;166454;166455;166456;166457;166458;166459;166460;166461;166462;166463;166464 166458 17 SSGPYGGGGQYFAKPR SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG R S S P R N 1 1 0 0 0 1 0 5 0 0 0 1 0 1 2 2 0 0 2 0 0 0 16 1 1627.7743 H0YH80;P09651;F8W6I7 P09651 337 352 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 2;3 4.1335E-38 175.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 7 6 12 12 0.85771 0.80634 13.819 39 Median 0.94921 1.0031 6.761 5 0 Median 0.91884 0.84256 5.1953 4 0 Median 0.72891 0.79988 7.7674 7 0 Median 0.9062 0.78996 5.6712 6 0 Median 0.75927 0.83724 16.323 9 1 Median 0.86119 0.73697 5.5512 8 0 Median 5841600000 3175900000 2665700000 134490000 68484000 66011000 118170000 60710000 57456000 1390100000 764810000 625260000 679240000 350650000 328590000 2766700000 1525200000 1241500000 752890000 405980000 346910000 31631 1919;1183 33258 165411;165412;165413;165414;165415;165416;165417;165418;165419;165420;165421;165422;165423;165424;165425;165426;165427;165428;165429;165430;165431;165432;165433;165434;165435;165436;165437;165438;165439;165440;165441;165442;165443;165444;165445;165446;165447;165448;165449;165450;165451;165452;165453;165454;165455;165456 166465;166466;166467;166468;166469;166470;166471;166472;166473;166474;166475;166476;166477;166478;166479;166480;166481;166482;166483;166484;166485;166486;166487;166488;166489;166490;166491;166492;166493;166494;166495;166496;166497;166498;166499;166500;166501;166502;166503;166504;166505;166506;166507;166508;166509;166510;166511;166512;166513;166514;166515;166516;166517;166518;166519;166520;166521;166522;166523;166524;166525;166526;166527;166528;166529;166530;166531;166532;166533;166534;166535;166536;166537;166538;166539;166540;166541;166542;166543;166544;166545;166546;166547;166548;166549;166550;166551;166552;166553;166554;166555;166556;166557;166558;166559;166560;166561;166562 166494 98 SSGSHLVFVPSLR DIFKQCLRTIIEGTRSSGSHLVFVPSLRDV TRSSGSHLVFVPSLRDVHHEPVYPQPPFSY R S S L R D 0 1 0 0 0 0 0 1 1 0 2 0 0 1 1 4 0 0 0 2 0 0 13 0 1384.7463 Q14181;A0A3B3ITS5;H0YDR7 Q14181 415 427 POLA2 DNA polymerase alpha subunit B yes no 3 1.4063E-05 88.101 By MS/MS By matching By matching By matching 1 1 1 1 1.0387 0.9837 11.281 4 Median 0.92051 0.8881 NaN 1 0 Median 1.3416 1.1641 NaN 1 0 Median 0.92136 0.96869 NaN 1 0 Median 1.171 0.99896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14091000 7147500 6943300 6309000 3201600 3107400 3016900 1244100 1772800 4450600 2553600 1897100 314380 148270 166110 0 0 0 0 0 0 31632 2862 33259 165457;165458;165459;165460 166563;166564 166564 2 SSGSHRDVEDEELTR PNDTKPIKVFIAQSRSSGSHRDVEDEELTR SSGSHRDVEDEELTRIFVMIPKSYTEEDLR R S S T R I 0 2 0 2 0 0 3 1 1 0 1 0 0 0 0 3 1 0 0 1 0 0 15 1 1715.7711 Q8IUH3 Q8IUH3 108 122 RBM45 RNA-binding protein 45 yes yes 3 0.031131 18.138 By MS/MS 1 0.83328 0.8873 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83328 0.8873 NaN 1 0 Median NaN NaN NaN 0 0 Median 1621300 781650 839610 0 0 0 0 0 0 0 0 0 0 0 0 1621300 781650 839610 0 0 0 31633 3314 33260 165461 166565 166565 1 SSGSPYGGGYGSGGGSGGYGSR QSNYGPMKGGSFGGRSSGSPYGGGYGSGGG GGYGSGGGSGGYGSRRF_____________ R S S S R R 0 1 0 0 0 0 0 11 0 0 0 0 0 0 1 6 0 0 3 0 0 0 22 0 1909.7827 P51991;H7C1J8 P51991 355 376 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes no 2;3 1.0264E-93 247.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 8 4 0.9618 0.96802 13.904 19 Median 1.4799 1.473 NaN 1 0 Median 1.2308 1.0745 NaN 1 0 Median 0.89167 0.96636 6.6538 3 0 Median 1.1429 0.94813 6.0597 2 0 Median 0.90515 0.90211 11.152 8 2 Median 1.2437 0.99133 2.533 4 0 Median 499920000 251540000 248390000 3706500 1238400 2468100 7651400 3399700 4251700 73926000 37373000 36553000 30076000 13956000 16121000 332240000 172130000 160110000 52324000 23443000 28881000 31634 2446 33261 165462;165463;165464;165465;165466;165467;165468;165469;165470;165471;165472;165473;165474;165475;165476;165477;165478;165479;165480 166566;166567;166568;166569;166570;166571;166572;166573;166574;166575;166576;166577;166578;166579;166580;166581;166582;166583;166584;166585;166586;166587;166588;166589;166590;166591;166592;166593;166594;166595;166596;166597;166598;166599;166600;166601;166602 166583 37 SSGTASSVAFTPLQGLEIVNPQAAEK KQSVVYGGKSTIRDRSSGTASSVAFTPLQG PLQGLEIVNPQAAEKKVAEANQKYFSSMAE R S S E K K 4 0 1 0 0 2 2 2 0 1 2 1 0 1 2 4 2 0 0 2 0 0 26 0 2601.3286 Q8WWY3;E7EVX8 Q8WWY3 445 470 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 5.5867E-08 42.647 By matching By MS/MS 1 1 0.68757 0.68434 13.26 2 Median 0.78041 0.75161 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60578 0.6231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3049400 1852800 1196600 271990 179420 92573 0 0 0 2777400 1673400 1104100 0 0 0 0 0 0 0 0 0 31635 3513 33262 165481;165482 166603;166604 166603 2 SSGVPVDGFYTEEVR VGKTTLIHKASEVLKSSGVPVDGFYTEEVR SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG K S S V R Q 0 1 0 1 0 0 2 2 0 0 0 0 0 1 1 2 1 0 1 3 0 0 15 0 1640.7682 Q5TDF0;Q9BSD7 Q5TDF0 28 42 NTPCR Cancer-related nucleoside-triphosphatase yes no 2 1.7952E-09 119.45 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1 1.114 0.94812 12.525 7 Median 0.93386 0.88762 NaN 1 0 Median 1.1229 0.94359 0.67691 2 1 Median 0.90308 0.86719 NaN 1 0 Median 1.7424 1.2584 NaN 1 0 Median 0.98626 1.0437 NaN 1 0 Median 1.2473 0.97802 NaN 1 0 Median 79870000 40785000 39085000 32370000 17344000 15026000 4806300 2065900 2740400 32298000 16531000 15767000 180730 79032 101700 9233700 4360900 4872800 981560 403490 578080 31636 3102 33263 165483;165484;165485;165486;165487;165488;165489 166605;166606;166607;166608;166609;166610;166611 166605 7 SSHLEVSQASQLLQQQQQQQLR PNTRHQQEFAVPDYRSSHLEVSQASQLLQQ QASQLLQQQQQQQLRRRPSLLSEFHPGSDR R S S L R R 1 1 0 0 0 9 1 0 1 0 4 0 0 0 0 4 0 0 0 1 0 0 22 0 2563.3103 O75376;J3KT44;C9JAP0;E7EVU5;E7EW50;J3KS51 O75376 45 66 NCOR1 Nuclear receptor corepressor 1 yes no 3 3.1827E-26 138.75 By MS/MS By matching 2 1 1.0666 1.1005 18.568 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0171 1.1005 22.542 2 0 Median 1.0666 0.93318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21049000 13549000 7500100 0 0 0 0 0 0 20580000 13341000 7239100 468960 208010 260960 0 0 0 0 0 0 31637 1665 33264 165490;165491;165492 166612;166613;166614;166615 166614 4 SSHSNAYFYGFFK DFPLTKVYVVEGSKRSSHSNAYFYGFFKNK KRSSHSNAYFYGFFKNKRIVLFDTLLEEYS R S S F K N 1 0 1 0 0 0 0 1 1 0 0 1 0 3 0 3 0 0 2 0 0 0 13 0 1553.6939 O75844 O75844 261 273 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 3 0.00043393 51.135 By MS/MS By matching 3 1 1.3177 1.275 22.167 4 Median 1.3338 1.2955 10.638 3 0 Median 1.0254 0.90101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8983900 3921400 5062500 7782100 3268700 4513400 1201800 652710 549110 0 0 0 0 0 0 0 0 0 0 0 0 31638 1700 33265 165493;165494;165495;165496 166616;166617 166616 2 SSHSTWPVDVSQIK LHEDRAEVWDLDMLRSSHSTWPVDVSQIKQ RSSHSTWPVDVSQIKQGFIVVKGHSTCLSE R S S I K Q 0 0 0 1 0 1 0 0 1 1 0 1 0 0 1 4 1 1 0 2 0 0 14 0 1569.7787 Q6P2E9 Q6P2E9 274 287 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.002275 58.676 By MS/MS 1 0.70478 0.76443 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70478 0.76443 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4592700 3018200 1574500 0 0 0 0 0 0 4592700 3018200 1574500 0 0 0 0 0 0 0 0 0 31639 3155 33266 165497 166618 166618 1 SSHYDELLAAEAR GLATVIRYRQDDDQRSSHYDELLAAEARAI QRSSHYDELLAAEARAIKNGKGLHSKKEVP R S S A R A 3 1 0 1 0 0 2 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1460.6896 Q7KZF4;H7C597 Q7KZF4 473 485 SND1 Staphylococcal nuclease domain-containing protein 1 yes no 2;3 2.3973E-22 199.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 5 2 3 1 1.2218 1.0675 82.99 12 Median 1.2194 1.172 132.15 3 0 Median 1.2412 1.0513 86.594 4 1 Median 1.0631 1.1276 6.1682 2 0 Median 1.2799 1.0847 3.8492 2 1 Median NaN NaN NaN 0 0 Median 0.70733 0.57566 NaN 1 0 Median 187700000 75738000 111960000 102530000 39182000 63351000 31343000 12492000 18851000 30959000 14502000 16457000 21773000 8860500 12913000 0 0 0 1092700 702000 390670 31640 3214 33267 165498;165499;165500;165501;165502;165503;165504;165505;165506;165507;165508;165509;165510;165511 166619;166620;166621;166622;166623;166624;166625;166626;166627;166628;166629;166630;166631;166632;166633 166622 15 SSIAGLLLK ELARREDVRHYLQGRSSIAGLLLKATNEKL HYLQGRSSIAGLLLKATNEKLSVYAALQRQ R S S L K A 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 9 0 900.56442 Q15149;H0YDN1 Q15149 2833 2841 PLEC Plectin yes no 2 0.0016236 79.469 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 3 1 1 1 2 1.3529 1.3003 12.961 10 Median 1.4026 1.3656 17.502 2 0 Median 1.4659 1.2919 4.4779 3 0 Median 1.2246 1.3088 NaN 1 0 Median 1.4232 1.3289 NaN 1 0 Median 1.2874 1.3518 NaN 1 0 Median 1.1978 1.0365 13.01 2 0 Median 49664000 21814000 27850000 20746000 9325000 11421000 10073000 4166600 5906600 12914000 5827100 7086600 739650 291180 448460 4044700 1721100 2323600 1147000 483380 663630 31641 2933 33268 165512;165513;165514;165515;165516;165517;165518;165519;165520;165521 166634;166635;166636;166637;166638;166639 166634 6 SSIALTAPDAAADPK EDEEEDSEKTESDEKSSIALTAPDAAADPK SSIALTAPDAAADPKEKPKQASKFDKLPIK K S S P K E 5 0 0 2 0 0 0 0 0 1 1 1 0 0 2 2 1 0 0 0 0 0 15 0 1426.7304 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63 A0A3F2YNW7 1844 1858 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 1.696E-05 73.466 By MS/MS 1 0.63327 0.69966 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63327 0.69966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10194000 6318800 3875700 0 0 0 0 0 0 10194000 6318800 3875700 0 0 0 0 0 0 0 0 0 31642 449 33269 165522 166640 166640 1 SSIDSEPALVLGPLK TITTDKMMDVTVTIKSSIDSEPALVLGPLK SSIDSEPALVLGPLKSVQELRREQQLAEIE K S S L K S 1 0 0 1 0 0 1 1 0 1 3 1 0 0 2 3 0 0 0 1 0 0 15 0 1524.8399 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7 J3KN36 686 700 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.013404 44.188 By MS/MS 1 0.48917 0.48419 NaN 1 Median 0.48917 0.48419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2944900 1770100 1174800 2944900 1770100 1174800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31643 117;1301 33270 165523 166641 166641 1 SSIIIKPSDPVER ADGPLKDRPETVVSRSSIIIKPSDPVERNS SRSSIIIKPSDPVERNSHAPPAETIRWKSH R S S E R N 0 1 0 1 0 0 1 0 0 3 0 1 0 0 2 3 0 0 0 1 0 0 13 1 1439.7984 Q86V48 Q86V48 877 889 LUZP1 Leucine zipper protein 1 yes yes 3 0.020905 23.831 By MS/MS 2 0.79677 0.76915 27.675 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79677 0.76915 27.675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1735400 1050700 684670 0 0 0 0 0 0 0 0 0 1735400 1050700 684670 0 0 0 0 0 0 31644 3285 33271 165524;165525 166642 166642 1 SSIIVAADESTISWGPSPTFGELGYGDHKPK QDLCGWRIRSLACGKSSIIVAADESTISWG SPTFGELGYGDHKPKSSTAAQEVKTLDGIF K S S P K S 2 0 0 2 0 0 2 4 1 3 1 2 0 1 3 5 2 1 1 1 0 0 31 1 3245.5881 Q9P258 Q9P258 440 470 RCC2 Protein RCC2 yes yes 3;4 9.2606E-10 50.294 By MS/MS By matching 2 1 0.61454 0.642 3.9145 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59365 0.6207 4.7712 2 1 Median 0.64269 0.64242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16177000 11022000 5154800 0 0 0 0 0 0 15761000 10777000 4984400 415320 244890 170420 0 0 0 0 0 0 31645 4214 33272 165526;165527;165528 166643;166644;166645 166645 3 SSILLDVKPWDDETDMAK QYESKKAKKPALVAKSSILLDVKPWDDETD LLDVKPWDDETDMAKLEECVRSIQADGLVW K S S A K L 1 0 0 4 0 0 1 0 0 1 2 2 1 0 1 2 1 1 0 1 0 0 18 1 2061.9929 P24534 P24534 140 157 EEF1B2 Elongation factor 1-beta yes yes 3 0.0012684 28.869 By matching By MS/MS By MS/MS 2 3 2 1.0629 1.0117 16.959 7 Median 1.0275 1.0208 1.2675 2 0 Median NaN NaN NaN 0 0 Median 0.90258 0.94501 28.777 3 0 Median 1.1882 1.0553 7.173 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11690000 5886500 5803100 3588800 1844100 1744700 0 0 0 7082600 3596700 3485900 1018200 445690 572490 0 0 0 0 0 0 31646 2123 33273 165529;165530;165531;165532;165533;165534;165535 166646;166647;166648 166646 3 SSILVFDDAPHYK DLALYLPSQDGRLVKSSILVFDDAPHYKSR VKSSILVFDDAPHYKSRIQGNIGVQMLVDL K S S Y K S 1 0 0 2 0 0 0 0 1 1 1 1 0 1 1 2 0 0 1 1 0 0 13 0 1490.7405 Q9NZJ4 Q9NZJ4 3919 3931 SACS Sacsin yes yes 3 0.011676 25.718 By MS/MS 1 4.9915 5.4184 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.9915 5.4184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3129300 1271800 1857500 0 0 0 0 0 0 3129300 1271800 1857500 0 0 0 0 0 0 0 0 0 31647 4189 33274 165536 166649 166649 1 SSILVQHQR EKPYGCVECGKAFSRSSILVQHQRVHTGEK GKAFSRSSILVQHQRVHTGEKPYKCLECGK R S S Q R V 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1066.5883 P17028 P17028 291 299 ZNF24 Zinc finger protein 24 yes yes 2 0.056984 29.149 By MS/MS 1 1.1733 1.1399 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1733 1.1399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 580950 281920 299030 0 0 0 0 0 0 580950 281920 299030 0 0 0 0 0 0 0 0 0 31648 2034 33275 165537 166650 166650 1 SSINDAAEFR SLSSYNYIHVGAQLKSSINDAAEFRVVADA GAQLKSSINDAAEFRVVADAMKVIGFKPEE K S S F R V 2 1 1 1 0 0 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 10 0 1108.5149 K7EIG7;O94832;J3QRN6;J3KRL0 K7EIG7 151 160 MYO1D Unconventional myosin-Id yes no 2 0.0079033 47.198 By matching By MS/MS By matching By matching 1 1 1 1 1.0249 0.93983 19.852 4 Median 0.72123 0.72964 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0555 1.1341 NaN 1 0 Median 0.99519 0.85061 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2519 1.0384 NaN 1 0 Median 5034200 2679300 2354900 907350 544930 362420 0 0 0 3030000 1544500 1485500 759020 436020 322990 0 0 0 337870 153860 184010 31649 1359 33276 165538;165539;165540;165541 166651 166651 1 SSIPITVR MRSGARQHERDSDRRSSIPITVRQLEAIVR ERDSDRRSSIPITVRQLEAIVRIAEALSKM R S S V R Q 0 1 0 0 0 0 0 0 0 2 0 0 0 0 1 2 1 0 0 1 0 0 8 0 871.51272 P33992;B1AHB1 P33992 604 611 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.004801 79.469 By matching By MS/MS By MS/MS 1 1 2 0.81551 0.81775 9.071 4 Median 0.8105 0.80119 NaN 1 0 Median 1.0754 0.92957 NaN 1 0 Median 0.75739 0.79044 7.698 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36666000 18968000 17698000 7799500 3787800 4011700 12231000 5884100 6347100 16636000 9296300 7339200 0 0 0 0 0 0 0 0 0 31650 2224 33277 165542;165543;165544;165545 166652;166653;166654;166655 166655 4 SSKELLLQPVTISR SQVVERHNKPEVEVRSSKELLLQPVTISRN RSSKELLLQPVTISRNEKEKVLIEGSINSV R S S S R N 0 1 0 0 0 1 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 14 1 1569.909 F8WCF6;P59998;F8WDD7;A0A0A6YYG9;H7C0A3 F8WCF6 42 55 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2;3 0.00025671 84.658 By MS/MS By matching 2 1 0.99428 0.98408 34.287 3 Median 0.83688 0.82838 24.358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5638 1.3843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14043000 6564400 7478800 13554000 6414600 7139300 0 0 0 0 0 0 489350 149800 339550 0 0 0 0 0 0 31651 1096 33278 165546;165547;165548 166656;166657;166658 166656 3 SSLAEYFK CCSLSIPFIPQNPARSSLAEYFKDSRNVKK IPQNPARSSLAEYFKDSRNVKKLKDPTLRF R S S F K D 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 8 0 943.4651 Q9UBU9;E9PIN3 Q9UBU9 430 437 NXF1 Nuclear RNA export factor 1 yes no 2 0.020962 46.016 By matching By MS/MS By matching By matching 1 1 1 1 1.2466 1.1781 14.774 4 Median NaN NaN NaN 0 0 Median 1.5594 1.3769 NaN 1 0 Median 1.1996 1.2572 NaN 1 0 Median 1.1461 0.98265 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2955 1.1041 NaN 1 0 Median 7102800 3275700 3827100 0 0 0 709790 306710 403080 5620400 2604900 3015500 339860 160190 179670 0 0 0 432690 203830 228860 31652 4249 33279 165549;165550;165551;165552 166659;166660 166660 2 SSLAVRDPAMDR ______________________________ ______________________________ M S S D R S 2 2 0 2 0 0 0 0 0 0 1 0 1 0 1 2 0 0 0 1 0 0 12 1 1316.6507 Q9H0L4 Q9H0L4 2 13 CSTF2T Cleavage stimulation factor subunit 2 tau variant yes yes 2 2.6697E-20 157.66 By MS/MS 2 0.78765 0.87896 3.1513 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78765 0.87896 3.1513 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31129000 17001000 14128000 0 0 0 0 0 0 31129000 17001000 14128000 0 0 0 0 0 0 0 0 0 31653 3927 33280 165553;165554 166661;166662 166661 2 SSLDNIEMAYAR ESEPSYISDVGPPGRSSLDNIEMAYARQIY PGRSSLDNIEMAYARQIYIYNEKIVNGHLQ R S S A R Q 2 1 1 1 0 0 1 0 0 1 1 0 1 0 0 2 0 0 1 0 0 0 12 0 1368.6344 Q8N1F7;H3BVG0;H3BP95;H3BMX0 Q8N1F7 176 187 NUP93 Nuclear pore complex protein Nup93 yes no 2 4.8065E-06 161.63 By MS/MS By matching By MS/MS By matching By matching 1 1 4 1 1 1.1599 1.1036 7.9749 8 Median 1.1462 1.0953 NaN 1 0 Median 1.2137 1.0664 NaN 1 0 Median 1.0368 1.0958 7.9021 4 1 Median 1.2904 1.112 NaN 1 0 Median 1.3521 1.3058 NaN 1 0 Median NaN NaN NaN 0 0 Median 74885000 33625000 41260000 5408500 2443300 2965200 1497200 619160 878010 62774000 28365000 34409000 4823200 2048000 2775100 383010 150190 232810 0 0 0 31654 3356 33281;33282 165555;165556;165557;165558;165559;165560;165561;165562 166663;166664;166665;166666;166667;166668;166669;166670 166665 1715 8 SSLEELHGDANWGEDLR YYSESLVHESWFPPRSSLEELHGDANWGED LEELHGDANWGEDLRVRRRRGTGGSESSRA R S S L R V 1 1 1 2 0 0 3 2 1 0 3 0 0 0 0 2 0 1 0 0 0 0 17 0 1926.8708 Q9UH99;B0QY64;B0QY68;B0QY66;B0QY67 Q9UH99 84 100 SUN2 SUN domain-containing protein 2 yes no 3 0.022958 16.494 By MS/MS By matching By matching 1 1 1 0.89223 0.94361 18.653 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76385 0.77942 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89223 0.94361 NaN 1 0 Median 1.3375 1.1318 NaN 1 0 Median 12818000 6803700 6014300 0 0 0 0 0 0 9512800 4968800 4544000 0 0 0 3137100 1766700 1370400 168110 68225 99889 31655 4271 33283 165563;165564;165565 166671 166671 1 SSLEGPTILDIEK ESLIADKSGSKKTLRSSLEGPTILDIEKFH LRSSLEGPTILDIEKFHRESFFYTHLINFS R S S E K F 0 0 0 1 0 0 2 1 0 2 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1400.7399 Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 582 594 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 2 0.0048175 39.266 By MS/MS 1 0.90115 0.97688 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90115 0.97688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5035100 2691000 2344100 0 0 0 0 0 0 5035100 2691000 2344100 0 0 0 0 0 0 0 0 0 31656 3224 33284 165566 166672;166673 166673 2 SSLEVELAAK QKAPDVEQAIEVLTRSSLEVELAAKEREIA EVLTRSSLEVELAAKEREIAQLVEDVQRLQ R S S A K E 2 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1045.5655 Q13948;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 297 306 CUX1 Protein CASP no no 2 0.00039696 78.149 By MS/MS By MS/MS 1 4 0.94815 0.88183 46.82 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86405 0.95425 NaN 1 0 Median 0.9878 0.86953 51.684 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15494000 7911000 7582600 0 0 0 0 0 0 10480000 5441700 5038100 5013800 2469300 2544500 0 0 0 0 0 0 31657 388;2847 33285 165567;165568;165569;165570;165571 166674;166675;166676 166674 3 SSLFHQGGR GSLWHWDASTDVPEKSSLFHQGGRSSTFLS TDVPEKSSLFHQGGRSSTFLSHSISNQANV K S S G R S 0 1 0 0 0 1 0 2 1 0 1 0 0 1 0 2 0 0 0 0 0 0 9 0 987.48863 Q8NFH3 Q8NFH3 299 307 NUP43 Nucleoporin Nup43 yes yes 2 0.00077011 98.997 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 0.88507 0.76918 30.805 5 Median NaN NaN NaN 0 0 Median 1.091 0.93219 NaN 1 0 Median 0.92065 0.99635 NaN 1 0 Median 0.88507 0.76918 NaN 1 0 Median 0.64957 0.64101 NaN 1 0 Median 0.56697 0.46493 NaN 1 0 Median 5818500 2935500 2883100 0 0 0 1798800 807250 991510 1868800 927680 941120 584170 278910 305260 1216000 679280 536710 350830 242350 108480 31658 3435 33286 165572;165573;165574;165575;165576 166677 166677 1 SSLGPVGLDK SQNVMAAASIANIVKSSLGPVGLDKMLVDD ANIVKSSLGPVGLDKMLVDDIGDVTITNDG K S S D K M 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 2 0 0 0 1 0 0 10 0 971.52876 P17987;E7ERF2;F5H136;F5GZI8;F5H676;F5GYL4;F5H726 P17987 34 43 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00041856 75.378 By MS/MS By MS/MS By MS/MS By matching 2 4 1 2 1.0122 0.9381 12.729 9 Median 0.99678 0.90292 5.4057 2 0 Median 1.0339 0.86518 19.221 4 0 Median 1.0012 1.0049 NaN 1 1 Median 1.123 0.97346 5.1446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100100000 48972000 51129000 52898000 26545000 26353000 40768000 19229000 21539000 5042500 2573900 2468600 1392200 623930 768220 0 0 0 0 0 0 31659 2051 33287 165577;165578;165579;165580;165581;165582;165583;165584;165585 166678;166679;166680;166681;166682;166683 166678 6 SSLGQSASETEEDTVSVSK MNSQQEEEEMETDARSSLGQSASETEEDTV QSASETEEDTVSVSKKEKNRKRRNRKKKKK R S S S K K 1 0 0 1 0 1 3 1 0 0 1 1 0 0 0 6 2 0 0 2 0 0 19 0 1939.8858 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 302 320 SF3B2 Splicing factor 3B subunit 2 yes no 2 4.1482E-19 156.5 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.93717 0.91522 9.4097 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86847 0.9279 NaN 1 0 Median 1.1908 1.0378 NaN 1 0 Median 0.88372 0.90271 NaN 1 0 Median 0.99385 0.82597 NaN 1 0 Median 31850000 15730000 16120000 0 0 0 0 0 0 10991000 5193300 5797400 8135600 3645500 4490100 11730000 6407000 5322500 994520 484000 510520 31660 2817 33288 165586;165587;165588;165589 166684;166685;166686;166687;166688;166689 166688 6 SSLGQSASETEEDTVSVSKK MNSQQEEEEMETDARSSLGQSASETEEDTV SASETEEDTVSVSKKEKNRKRRNRKKKKKP R S S K K E 1 0 0 1 0 1 3 1 0 0 1 2 0 0 0 6 2 0 0 2 0 0 20 1 2067.9808 Q13435;E9PPJ0;H0YCG1;E9PJ04 Q13435 302 321 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 4.5723E-14 99.508 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 4 1 0.83782 0.95567 9.9557 9 Median 0.90934 0.95567 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81264 0.94322 5.0771 2 1 Median 1.2138 1.1562 NaN 1 0 Median 0.83135 0.9155 7.8875 4 0 Median 1.2512 1.1267 NaN 1 0 Median 115590000 61025000 54560000 6309000 3216800 3092300 0 0 0 36536000 19057000 17479000 3559100 1617200 1941900 65184000 35367000 29817000 3997400 1766500 2230900 31661 2817 33289 165590;165591;165592;165593;165594;165595;165596;165597;165598;165599 166690;166691;166692;166693;166694;166695;166696;166697;166698;166699;166700;166701 166693 11 SSLLDQNLTEEEINMK LQTLKLMQIRKPLLKSSLLDQNLTEEEINM SLLDQNLTEEEINMKFVQDLLNWVDEMQVQ K S S M K F 0 0 2 1 0 1 3 0 0 1 3 1 1 0 0 2 1 0 0 0 0 0 16 0 1862.8932 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 591 606 DST Dystonin yes no 2 3.2026E-05 82.171 By MS/MS By matching By MS/MS 1 1 1 1.0229 1.0198 3.2349 3 Median 1.0229 1.0198 NaN 1 0 Median 1.1167 0.99246 NaN 1 0 Median 0.97298 1.0585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9461300 4363400 5097900 6205900 2840300 3365700 445830 198600 247230 2809500 1324500 1485000 0 0 0 0 0 0 0 0 0 31662 934 33290 165600;165601;165602 166702;166703;166704;166705 166702 4 SSLLEKGLDGAK DPGLARQAPKPRKQRSSLLEKGLDGAKKAV KQRSSLLEKGLDGAKKAVGGLGKLGKDAVE R S S A K K 1 0 0 1 0 0 1 2 0 0 3 2 0 0 0 2 0 0 0 0 0 0 12 1 1216.6663 P81605 P81605 63 74 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 0.00072156 102.06 By MS/MS By MS/MS 6 2 0.072432 0.066481 97.262 6 Median NaN NaN NaN 0 0 Median 0.1261 0.10932 103.29 5 5 Median NaN NaN NaN 0 0 Median 0.033924 0.034464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17833000 16642000 1191900 0 0 0 15598000 14478000 1119700 0 0 0 2235400 2163200 72199 0 0 0 0 0 0 31663 2650 33291 165603;165604;165605;165606;165607;165608;165609;165610 166706;166707;166708;166709;166710;166711;166712;166713 166706 8 SSLLEKGLDGAKK DPGLARQAPKPRKQRSSLLEKGLDGAKKAV QRSSLLEKGLDGAKKAVGGLGKLGKDAVED R S S K K A 1 0 0 1 0 0 1 2 0 0 3 3 0 0 0 2 0 0 0 0 0 0 13 2 1344.7613 P81605 P81605 63 75 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 3 0.0028819 73.927 By MS/MS By MS/MS 1 2 0.036938 0.043631 26.885 3 Median 0.036938 0.043631 NaN 1 1 Median 0.037681 0.039973 37.342 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13461000 13041000 419540 3289500 3184800 104640 10171000 9856100 314900 0 0 0 0 0 0 0 0 0 0 0 0 31664 2650 33292 165611;165612;165613 166714;166715;166716 166715 3 SSLLLGFR FLKSNTLPISLQSIRSSLLLGFRRSMNINL ISLQSIRSSLLLGFRRSMNINLWSEITELL R S S F R R 0 1 0 0 0 0 0 1 0 0 3 0 0 1 0 2 0 0 0 0 0 0 8 0 891.5178 P42704 P42704 542 549 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0023 111.28 By MS/MS By MS/MS By matching 2 1 1 1.1524 1.1313 3.7988 4 Median 1.1524 1.1313 3.806 2 0 Median NaN NaN NaN 0 0 Median 0.99687 1.0894 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4315 1.1753 NaN 1 0 Median 14058000 6158400 7899400 11829000 5092700 6736600 0 0 0 2104500 1017700 1086800 0 0 0 0 0 0 123910 47970 75940 31665 2315 33293 165614;165615;165616;165617 166717;166718;166719 166718 3 SSLLLGFRR FLKSNTLPISLQSIRSSLLLGFRRSMNINL SLQSIRSSLLLGFRRSMNINLWSEITELLY R S S R R S 0 2 0 0 0 0 0 1 0 0 3 0 0 1 0 2 0 0 0 0 0 0 9 1 1047.6189 P42704 P42704 542 550 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0061203 68.915 By MS/MS 1 0.74826 0.83133 NaN 1 Median 0.74826 0.83133 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11327000 6651500 4675600 11327000 6651500 4675600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31666 2315 33294 165618 166720 166720 1 SSLLPTDYLVEINK PIQQRKMGQLASGIRSSLLPTDYLVEINKI RSSLLPTDYLVEINKILLCMDDVELSLNVP R S S N K I 0 0 1 1 0 0 1 0 0 1 3 1 0 0 1 2 1 0 1 1 0 0 14 0 1590.8505 P46939 P46939 1865 1878 UTRN Utrophin yes yes 2 0.002275 58.676 By MS/MS 1 0.87949 0.87207 NaN 1 Median 0.87949 0.87207 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2797100 1139900 1657200 2797100 1139900 1657200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31667 2349 33295 165619 166721 166721 1 SSLLTELSNSLTK LELTLAEALKFIDRKSSLLTELSNSLTKDS RKSSLLTELSNSLTKDSMNIKAHIHMLLEG K S S T K D 0 0 1 0 0 0 1 0 0 0 4 1 0 0 0 4 2 0 0 0 0 0 13 0 1391.7508 Q9UBK9 Q9UBK9 114 126 UXT Protein UXT yes yes 2 0.031759 26.673 By MS/MS 1 1.0487 0.98798 NaN 1 Median 1.0487 0.98798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1356900 682790 674120 1356900 682790 674120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31668 4240 33296 165620 166722 166722 1 SSLLVGNLK GFVIQEGAEPFPVGRSSLLVGNLKKKYAQG PFPVGRSSLLVGNLKKKYAQGFLPEKLPQQ R S S L K K 0 0 1 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 9 0 929.55458 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 590 598 PHC2 Polyhomeotic-like protein 2 yes no 2 0.0089482 94.662 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31669 180 33297 165621 166723 166723 1 SSLMDTADGVPVSSR PPSGIVKGMHKGSNRSSLMDTADGVPVSSR SSLMDTADGVPVSSRVSTKIQQLLNTLKRP R S S S R V 1 1 0 2 0 0 0 1 0 0 1 0 1 0 1 4 1 0 0 2 0 0 15 0 1520.7141 Q9P265 Q9P265 258 272 DIP2B Disco-interacting protein 2 homolog B yes yes 2 8.6165E-10 107.18 By MS/MS 1 0.68636 0.7391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68636 0.7391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4860500 2841400 2019100 0 0 0 0 0 0 4860500 2841400 2019100 0 0 0 0 0 0 0 0 0 31670 4215 33298 165622 166724 166724 1 SSLNPILFR ADTENLLKAPTIVGKSSLNPILFRGVGMVA PTIVGKSSLNPILFRGVGMVADPDNPLVLD K S S F R G 0 1 1 0 0 0 0 0 0 1 2 0 0 1 1 2 0 0 0 0 0 0 9 0 1045.592 P39656;A0A0C4DGS1;U3KQ84 P39656 190 198 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 7.6684E-05 149.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1.0563 1.0829 23.948 11 Median 0.94459 0.92621 9.8051 4 1 Median 1.306 1.1372 34.764 3 0 Median 1.0278 1.0408 7.5493 2 0 Median NaN NaN NaN 0 0 Median 1.2469 1.3322 NaN 1 0 Median 1.4362 1.2288 NaN 1 0 Median 166750000 78662000 88087000 79173000 39523000 39651000 31483000 12741000 18741000 51902000 24615000 27288000 0 0 0 3141000 1342900 1798100 1049300 440580 608700 31671 253 33299 165623;165624;165625;165626;165627;165628;165629;165630;165631;165632;165633 166725;166726;166727;166728;166729;166730;166731;166732 166730 8 SSLNSSPWSGLMALGNSR ______________________________ NSSPWSGLMALGNSRHGHHGPGAQCAHKAA K S S S R H 1 1 2 0 0 0 0 2 0 0 3 0 1 0 1 6 0 1 0 0 0 0 18 0 1862.8945 Q8TCJ2 Q8TCJ2 13 30 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B yes yes 2 5.3689E-06 62.042 By MS/MS By matching By MS/MS 2 2 2 0.98723 0.95524 8.6497 6 Median 0.93268 0.9205 1.3089 2 1 Median 1.0874 0.95524 0.20736 2 0 Median 0.98723 1.099 4.7603 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18053000 9174900 8878500 14652000 7582200 7069600 815180 408240 406940 2586400 1184400 1401900 0 0 0 0 0 0 0 0 0 31672 3466 33300 165634;165635;165636;165637;165638;165639 166733;166734;166735;166736 166734 4 SSLQSQCLNEVLK DLCSRVTFVNFTVTRSSLQSQCLNEVLKAE TRSSLQSQCLNEVLKAERPDVDEKRSDLLK R S S L K A 0 0 1 0 1 2 1 0 0 0 3 1 0 0 0 3 0 0 0 1 0 0 13 0 1504.7555 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3706 3718 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0009775 61.353 By MS/MS 1 1.0475 1.1168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0475 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28267000 14047000 14221000 0 0 0 0 0 0 28267000 14047000 14221000 0 0 0 0 0 0 0 0 0 31673 2865 33301 165640 166737;166738 166738 2 SSLSEYAFR ______________________________ ______________________________ M S S F R M 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 3 0 0 1 0 0 0 9 0 1058.5033 Q9Y291 Q9Y291 2 10 MRPS33 28S ribosomal protein S33, mitochondrial yes yes 2 0.00085048 95.531 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.6855 1.4249 23.807 5 Median 1.0971 1.0645 NaN 1 0 Median 1.6855 1.4249 NaN 1 0 Median 1.1102 1.1232 NaN 1 0 Median 1.9188 1.52 NaN 1 0 Median 1.7884 1.9128 NaN 1 0 Median NaN NaN NaN 0 0 Median 24784000 11281000 13503000 19935000 9282900 10652000 1394000 554140 839860 2605900 1161500 1444300 567430 189860 377570 282250 92928 189320 0 0 0 31674 4380 33302 165641;165642;165643;165644;165645 166739;166740 166740 2 SSLSHAMVIDSR TASFAVRKESGHSLKSSLSHAMVIDSRNSS SLKSSLSHAMVIDSRNSSILPRRGALLKVN K S S S R N 1 1 0 1 0 0 0 0 1 1 1 0 1 0 0 4 0 0 0 1 0 0 12 0 1301.6398 Q9Y512 Q9Y512 256 267 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 3 0.00020247 61.375 By MS/MS 1 1.1657 1.1252 NaN 1 Median 1.1657 1.1252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8091900 4069400 4022500 8091900 4069400 4022500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31675 4452 33303 165646 166741;166742 166741 2 SSLSSAQADFNQLAELDR LEEIKALREAHDAFRSSLSSAQADFNQLAE SSAQADFNQLAELDRQIKSFRVASNPYTWF R S S D R Q 3 1 1 2 0 2 1 0 0 0 3 0 0 1 0 4 0 0 0 0 0 0 18 0 1950.9283 A0A0D9SF54;Q13813 Q13813 2138 2155 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 8.1545E-16 167.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 2 1.0233 0.98426 19.57 12 Median 1.2632 1.2094 6.9773 2 0 Median 0.99723 0.83128 29.981 2 0 Median 0.956 1.0422 24.282 3 0 Median 1.0743 0.93792 1.0933 2 0 Median 0.97552 1.0249 NaN 1 0 Median 0.97946 0.83268 11.446 2 0 Median 127180000 62810000 64373000 29681000 12717000 16964000 10482000 5163800 5317800 79316000 41269000 38048000 3309000 1550100 1758900 3516300 1679200 1837100 878380 431020 447350 31676 264;2838 33304 165647;165648;165649;165650;165651;165652;165653;165654;165655;165656;165657;165658 166743;166744;166745;166746;166747;166748;166749;166750;166751;166752;166753;166754;166755;166756;166757;166758;166759;166760 166747 18 SSLSSHSHQSQIYR SARSLHSAHSLASRRSSLSSHSHQSQIYRS RSSLSSHSHQSQIYRSHNVAAGSYEAPLPP R S S Y R S 0 1 0 0 0 2 0 0 2 1 1 0 0 0 0 6 0 0 1 0 0 0 14 0 1615.7703 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5 O15027 1368 1381 SEC16A Protein transport protein Sec16A yes no 3 0.057 11.915 By matching By MS/MS 1 1 1.3911 1.2867 2.6702 2 Median 1.2737 1.2626 NaN 1 0 Median 1.5193 1.3112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1094600 418180 676390 392560 150590 241970 702020 267600 434420 0 0 0 0 0 0 0 0 0 0 0 0 31677 1513 33305 165659;165660 166761 166761 1 SSLTLATAINQR EWLKTVNESHGSVERSSLTLATAINQRGIY VERSSLTLATAINQRGIYVIQAPKGGQKIS R S S Q R G 2 1 1 0 0 1 0 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1273.699 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 1581 1592 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.0036305 71.349 By MS/MS By MS/MS By matching 1 2 1 1.0563 0.92882 34.714 3 Median 1.3569 1.3352 NaN 1 0 Median 1.0563 0.92882 NaN 1 0 Median 0.53725 0.66703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14059000 6408300 7650400 8905600 3466900 5438600 622250 203180 419070 4530900 2738200 1792700 0 0 0 0 0 0 0 0 0 31678 189 33306 165661;165662;165663;165664 166762;166763 166763 1 SSLTQHSWQSLK PSSVTGNALWKAMEKSSLTQHSWQSLKDRY MEKSSLTQHSWQSLKDRYLKHLRGQEHKYL K S S L K D 0 0 0 0 0 2 0 0 1 0 2 1 0 0 0 4 1 1 0 0 0 0 12 0 1400.7048 Q9NYB0;A0A590UJT3 Q9NYB0 170 181 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 3 0.0012832 42.809 By MS/MS 1 1.2933 1.1101 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2933 1.1101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2644000 1110900 1533100 0 0 0 0 0 0 0 0 0 2644000 1110900 1533100 0 0 0 0 0 0 31679 4174 33307 165665 166764;166765 166765 2 SSLTYFQQQLKPGKEDK SPRPPLGSSLSPWWRSSLTYFQQQLKPGKE LTYFQQQLKPGKEDKLFRKKRRSWKNAEDR R S S D K L 0 0 0 1 0 3 1 1 0 0 2 3 0 1 1 2 1 0 1 0 0 0 17 2 1996.0266 A0A0C4DGG3;Q8NHM5 A0A0C4DGG3 215 231 KDM2B Lysine-specific demethylase 2B yes no 3 0.065264 9.9958 By MS/MS 2 0.37899 0.43991 59.419 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37899 0.43991 59.419 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9720900 6734700 2986200 0 0 0 0 0 0 9720900 6734700 2986200 0 0 0 0 0 0 0 0 0 31680 245 33308 165666;165667 166766 166766 1 SSLVESDKEEQPDFLPR KFMKKFEAVLSEPCRSSLVESDKEEQPDFL LVESDKEEQPDFLPRPTDGAASELSSIQNL R S S P R P 0 1 0 2 0 1 3 0 0 0 2 1 0 1 2 3 0 0 0 1 0 0 17 1 1974.9535 Q9NU22 Q9NU22 3987 4003 MDN1 Midasin yes yes 3 1.0236E-05 52.026 By MS/MS 1 0.614 0.71122 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.614 0.71122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6766600 4031100 2735400 0 0 0 0 0 0 6766600 4031100 2735400 0 0 0 0 0 0 0 0 0 31681 4112 33309 165668 166767;166768 166767 2 SSLYEQMGDHK ALKYEPTNVRYLWERSSLYEQMGDHKMAMD LWERSSLYEQMGDHKMAMDGYRRILNLLSP R S S H K M 0 0 0 1 0 1 1 1 1 0 1 1 1 0 0 2 0 0 1 0 0 0 11 0 1293.566 Q9Y5Q9;A0A494C1S7 Q9Y5Q9 258 268 GTF3C3 General transcription factor 3C polypeptide 3 yes no 3 0.052274 14.876 By MS/MS 1 1.417 1.4969 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.417 1.4969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1790300 782560 1007700 0 0 0 0 0 0 1790300 782560 1007700 0 0 0 0 0 0 0 0 0 31682 4467 33310 165669 166769 166769 1 SSMGMDISAIDLINIESFSSR TMDGAKAKAILDASRSSMGMDISAIDLINI ISAIDLINIESFSSRVVSLSEYRQSLHTYL R S S S R V 1 1 1 2 0 0 1 1 0 4 1 0 2 1 0 6 0 0 0 0 0 0 21 0 2272.0715 O00567;A0A494C128;H0YDU4 O00567 250 270 NOP56 Nucleolar protein 56 yes no 2 1.0937E-08 59.306 By MS/MS 2 1.1591 1.1985 12.126 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1591 1.1985 12.126 2 0 Median NaN NaN NaN 0 0 Median 2685100 1311600 1373400 0 0 0 0 0 0 0 0 0 0 0 0 2685100 1311600 1373400 0 0 0 31683 1472 33311 165670;165671 166770 166770 474;475 1 SSMNVDEAFSSLAR LAREHGIRFFETSAKSSMNVDEAFSSLARD KSSMNVDEAFSSLARDILLKSGGRRSGNGN K S S A R D 2 1 1 1 0 0 1 0 0 0 1 0 1 1 0 4 0 0 0 1 0 0 14 0 1512.6879 P51153;A0A087WWB9 P51153 154 167 RAB13 Ras-related protein Rab-13 yes no 2 5.0227E-09 109.6 By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 1.1046 1.0487 16.961 8 Median 1.1046 1.069 10.88 2 0 Median 1.1521 0.97998 30.911 2 0 Median 0.93914 0.90024 7.7973 2 0 Median 1.3549 1.1112 NaN 1 0 Median 1.2904 1.2525 NaN 1 0 Median NaN NaN NaN 0 0 Median 36687000 17786000 18901000 21166000 10505000 10660000 3807700 1468000 2339600 10563000 5325300 5237300 384400 158580 225820 766690 328600 438090 0 0 0 31684 2430 33312;33313 165672;165673;165674;165675;165676;165677;165678;165679 166771;166772;166773;166774;166775;166776 166771 1136 6 SSMSVTSLEAELQAK LVFATPLCCALFPQKSSMSVTSLEAELQAK SSMSVTSLEAELQAKIQESHPELRRVYFNK K S S A K I 2 0 0 0 0 1 2 0 0 0 2 1 1 0 0 4 1 0 0 1 0 0 15 0 1579.7763 Q9H9B4 Q9H9B4 291 305 SFXN1 Sideroflexin-1 yes yes 2 2.0313E-09 103.08 By MS/MS By matching By matching By matching 2 2 1 1 1.2575 1.088 18.693 6 Median 0.99001 0.89941 12.464 2 0 Median 1.4872 1.2545 2.655 2 0 Median 0.91268 0.8875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4597 1.2051 NaN 1 0 Median 66011000 30239000 35772000 57156000 26544000 30612000 7139200 2840000 4299200 1309800 699830 609990 0 0 0 0 0 0 406440 155670 250770 31685 3998 33314;33315 165680;165681;165682;165683;165684;165685 166777;166778;166779 166779 1862 3 SSMTFLTR LKGMAAAGNYAWVNRSSMTFLTRQAFAKVF NYAWVNRSSMTFLTRQAFAKVFNTTPDDLD R S S T R Q 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 2 2 0 0 0 0 0 8 0 941.46405 Q9Y3I0 Q9Y3I0 322 329 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0034375 96.253 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.285 1.1624 13.014 5 Median 0.94508 0.90246 NaN 1 0 Median 1.3818 1.1624 NaN 1 0 Median 1.2483 1.2465 NaN 1 0 Median 1.3525 1.1497 8.3565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42193000 19011000 23183000 11317000 5952700 5364000 11752000 4692400 7059900 13176000 5992700 7183800 5948000 2373200 3574800 0 0 0 0 0 0 31686 4430 33316 165686;165687;165688;165689;165690 166780;166781;166782;166783;166784;166785 166780 6 SSNADAEEKLDR HDPNSVVTKSAKKLRSSNADAEEKLDRSHD KLRSSNADAEEKLDRSHDKSDRGHDKSDRS R S S D R S 2 1 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 12 1 1333.611 O60828 O60828 94 105 PQBP1 Polyglutamine-binding protein 1 yes yes 2;3 9.9819E-05 82.362 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 1 2 3 2 2 1 1.0945 1.045 13.977 11 Median 1.1182 1.1039 NaN 1 0 Median 1.1775 1.1001 10.914 2 0 Median 0.93021 1.0291 13.051 3 0 Median 1.0568 0.99731 8.5571 2 0 Median 1.0941 1.1792 17.088 2 0 Median 0.87409 0.8089 NaN 1 0 Median 11451000 5216200 6234800 1085900 460870 625010 761920 359210 402710 1856600 883710 972930 4156100 1735300 2420900 3447700 1702600 1745100 142730 74628 68106 31687 1633 33317 165691;165692;165693;165694;165695;165696;165697;165698;165699;165700;165701 166786;166787;166788;166789;166790;166791;166792 166790 7 SSNEVLNVIQGNTTVDELMMR KTDQFPLFLIIMGKRSSNEVLNVIQGNTTV NVIQGNTTVDELMMRLMAAMEIFTAQQQED R S S M R L 0 1 3 1 0 1 2 1 0 1 2 0 2 0 0 2 2 0 0 3 0 0 21 0 2349.1304 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 459 479 FAF1 FAS-associated factor 1 yes no 2;3 9.5368E-05 35.973 By MS/MS By matching By matching 2 1 1 0.99086 0.92948 6.1228 4 Median 0.99519 0.98464 5.1301 2 0 Median 1.0179 0.90983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85208 0.88793 NaN 1 0 Median NaN NaN NaN 0 0 Median 3857100 1795900 2061200 3342100 1555700 1786400 317230 161870 155360 0 0 0 0 0 0 197750 78324 119430 0 0 0 31688 575 33318 165702;165703;165704;165705 166793;166794;166795 166794 3 SSNLLDLKNPFFR YDISIVAQVDQTGSKSSNLLDLKNPFFRYT SKSSNLLDLKNPFFRYTGTTPSPPPGSHYT K S S F R Y 0 1 2 1 0 0 0 0 0 0 3 1 0 2 1 2 0 0 0 0 0 0 13 1 1549.8253 Q86X55;K7EQB9 Q86X55 463 475 CARM1 Histone-arginine methyltransferase CARM1 yes no 2;3 0.0014653 74.162 By MS/MS By matching 5 1 1.0212 1.046 14.377 5 Median 0.93821 0.96359 13.415 4 0 Median 1.1748 1.1519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10779000 6321100 4458300 10120000 6036100 4084200 659060 284930 374130 0 0 0 0 0 0 0 0 0 0 0 0 31689 3299 33319 165706;165707;165708;165709;165710;165711 166796;166797;166798;166799 166796 4 SSNPMMVLQLPER MTGSWDKTLKFWDTRSSNPMMVLQLPERCY TRSSNPMMVLQLPERCYCADVIYPMAVVAT R S S E R C 0 1 1 0 0 1 1 0 0 0 2 0 2 0 2 2 0 0 0 1 0 0 13 0 1500.7429 P78406;E9PQ57;E9PPG9 P78406 160 172 RAE1 mRNA export factor yes no 2 6.8856E-07 111.86 By MS/MS By MS/MS By MS/MS By matching 4 3 3 1 0.82253 0.87329 46.871 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80951 0.88594 1.8938 4 2 Median 1.0048 0.86979 48.566 3 0 Median 0.88351 0.90057 59.073 3 1 Plateau 1.238 1.09 NaN 1 0 Median 129450000 71594000 57855000 0 0 0 0 0 0 105420000 57416000 48000000 9417600 5433500 3984100 14221000 8531000 5689700 394560 213960 180610 31690 2645 33320;33321;33322 165712;165713;165714;165715;165716;165717;165718;165719;165720;165721;165722 166800;166801;166802;166803;166804;166805;166806;166807;166808;166809;166810;166811;166812;166813;166814;166815;166816 166808 1308;1309 17 SSNPSISDDSYFR REGLRSDVFPGPSFRSSNPSISDDSYFRKE FRSSNPSISDDSYFRKECGRDLEFSHSDSR R S S F R K 0 1 1 2 0 0 0 0 0 1 0 0 0 1 1 5 0 0 1 0 0 0 13 0 1473.6372 M0R2Z9;Q8IX01;M0R3F6;M0R065;M0R216 M0R2Z9 106 118 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.0013784 54.776 By matching By matching By MS/MS By matching 1 1 2 1 0.77349 0.78571 39.692 5 Median NaN NaN NaN 0 0 Median 2.106 1.8488 NaN 1 0 Median 0.77349 0.84945 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70544 0.74178 8.1383 2 0 Median 0.90588 0.75822 NaN 1 0 Median 10267000 5334900 4931900 0 0 0 268300 103430 164870 3166300 1419300 1747000 0 0 0 6565800 3698900 2866900 266290 113180 153110 31691 1437 33323 165723;165724;165725;165726;165727 166817;166818;166819 166818 3 SSNSLVFQTLPR RAAEISAMLKAVTQKSSNSLVFQTLPRHMR TQKSSNSLVFQTLPRHMRRRAMSHNVKRLP K S S P R H 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 3 1 0 0 1 0 0 12 0 1347.7147 Q99575;E5RK39 Q99575 126 137 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.022187 31.843 By MS/MS 1 1.1998 1.3172 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1998 1.3172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3018200 1101700 1916500 0 0 0 0 0 0 3018200 1101700 1916500 0 0 0 0 0 0 0 0 0 31692 3754 33324 165728 166820 166820 1 SSPAAFINPPIGTVTPALK PRQVADAREKISLKRSSPAAFINPPIGTVT AFINPPIGTVTPALKLTKTIQRMHVDPVGW R S S L K L 3 0 1 0 0 0 0 1 0 2 1 1 0 1 4 2 2 0 0 1 0 0 19 0 1880.0407 F6VRR5;Q9BY77;F8WCX5;Q6R954;Q8WUT1;F8WEE2 F6VRR5 126 144 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 no no 2 1.7421E-09 89.231 By MS/MS By matching By MS/MS 3 2 1 0.59316 0.54189 15.792 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52505 0.50589 23.133 3 0 Median 0.6894 0.58359 0.76422 2 0 Median 0.51961 0.49865 NaN 1 0 Median NaN NaN NaN 0 0 Median 21402000 13415000 7987100 0 0 0 0 0 0 18967000 11928000 7039800 723740 448370 275370 1711200 1039300 671890 0 0 0 31693 1051;3496 33325 165729;165730;165731;165732;165733;165734 166821;166822;166823;166824 166823 4 SSPATADKR ERSDVLAGPVHVRSRSSPATADKRQDVLLG VHVRSRSSPATADKRQDVLLGQDSGFGLVK R S S K R Q 2 1 0 1 0 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 9 1 931.47231 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 1161 1169 SHROOM3 Protein Shroom3 yes no 2 0.0019172 87.323 By MS/MS By MS/MS By MS/MS 1 1 1 0.025172 0.02236 173.46 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0048442 0.0059857 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.1801 0.18632 NaN 1 1 Median 0.025172 0.02236 NaN 1 1 Median 4491600 4417500 74038 0 0 0 0 0 0 2736000 2729500 6570.9 0 0 0 630990 599540 31444 1124500 1088500 36023 31694 372 33326 165735;165736;165737 166825;166826;166827 166825 3 SSPDMLYQYLK PANSFQLESDFRQLKSSPDMLYQYLKQIEP RQLKSSPDMLYQYLKQIEPSLYPKLFQKNL K S S L K Q 0 0 0 1 0 1 0 0 0 0 2 1 1 0 1 2 0 0 2 0 0 0 11 0 1343.6431 Q9H6T3 Q9H6T3 561 571 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 0.0018537 56.729 By MS/MS By matching By matching 2 1 2 0.92707 0.86395 21.763 5 Median 0.93816 0.90513 6.5846 2 0 Median NaN NaN NaN 0 0 Median 0.87793 0.8515 NaN 1 0 Median 1.237 1.0667 37.645 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7654200 3861500 3792700 5702900 2834300 2868600 0 0 0 1438000 793420 644560 513370 233850 279520 0 0 0 0 0 0 31695 3978 33327 165738;165739;165740;165741;165742 166828 166828 1 SSPELEDTATSSK EESMTDDKTTKIPCKSSPELEDTATSSKRR CKSSPELEDTATSSKRRPRTRAQKVEVKEE K S S S K R 1 0 0 1 0 0 2 0 0 0 1 1 0 0 1 4 2 0 0 0 0 0 13 0 1350.6151 P46013 P46013 2827 2839 MKI67 Antigen KI-67 yes yes 2 0.01566 33.229 By MS/MS 1 0.79603 0.87164 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79603 0.87164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1990900 1003700 987290 0 0 0 0 0 0 1990900 1003700 987290 0 0 0 0 0 0 0 0 0 31696 2335 33328 165743 166829 166829 1 SSPEPVALTESETEYVIR LAAVPEFRGLGPLFKSSPEPVALTESETEY EPVALTESETEYVIRCTKHTFTNHMVFQFD K S S I R C 1 1 0 0 0 0 4 0 0 1 1 0 0 0 2 3 2 0 1 2 0 0 18 0 2005.9844 Q9Y678 Q9Y678 632 649 COPG1 Coatomer subunit gamma-1 yes yes 2 5.6249E-06 61.641 By MS/MS 2 0.71297 0.6932 4.9101 2 Median 0.71297 0.6932 4.9101 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6761500 3983300 2778200 6761500 3983300 2778200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31697 4481 33329 165744;165745 166830;166831;166832 166831 3 SSPEVSSINQEALVLTAK RLISLPLSRIRVIMKSSPEVSSINQEALVL EVSSINQEALVLTAKATIYYQRRF______ K S S A K A 2 0 1 0 0 1 2 0 0 1 2 1 0 0 1 4 1 0 0 2 0 0 18 0 1871.984 E5RGS9;Q9NRG0 E5RGS9 30 47 CHRAC1 Chromatin accessibility complex protein 1 yes no 2 0.052406 20.096 By matching By matching By MS/MS By matching 1 1 1 1 0.94836 0.86262 17.636 4 Median 1.2307 1.1346 NaN 1 0 Median 0.92366 0.76947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97371 0.79962 NaN 1 0 Median 0.86964 0.93059 NaN 1 0 Median NaN NaN NaN 0 0 Median 7167300 3691200 3476200 2979600 1570700 1408900 2570100 1298100 1272000 0 0 0 605600 297120 308480 1012000 525180 486810 0 0 0 31698 842 33330 165746;165747;165748;165749 166833;166834 166833 2 SSPGAVAGLSNAPGTPR VNGSLGSGDMDGLPKSSPGAVAGLSNAPGT PGAVAGLSNAPGTPRDDGEMAAAGTFLHPF K S S P R D 3 1 1 0 0 0 0 3 0 0 1 0 0 0 3 3 1 0 0 1 0 0 17 0 1537.7849 Q9BWG4;V9GYB2;U3KPY3 Q9BWG4 341 357 SSBP4 Single-stranded DNA-binding protein 4 yes no 2 0.00063249 56.122 By MS/MS 1 0.50644 0.50991 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50644 0.50991 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2999000 2242800 756180 0 0 0 0 0 0 2999000 2242800 756180 0 0 0 0 0 0 0 0 0 31699 3871 33331 165750 166835 166835 1 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR NQDKKNGAAKQSNPKSSPGQPEAGPEGAQE PAVEAEGPGSSQAPRKPEGAQARTAQSGAL K S S P R K 7 2 0 0 0 4 5 5 0 0 0 0 0 0 7 5 0 0 0 1 0 0 36 1 3483.6251 P40222 P40222 18 53 TXLNA Alpha-taxilin yes yes 3 2.623E-13 61.228 By MS/MS By MS/MS By MS/MS 1 1 2 0.37755 0.34449 22.636 4 Median 0.42799 0.43882 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.24828 0.27706 NaN 1 0 Median 0.37912 0.34449 21.873 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24623000 18775000 5848200 2562500 2130400 432060 0 0 0 6529100 4892800 1636300 15532000 11752000 3779900 0 0 0 0 0 0 31700 2284 33332 165751;165752;165753;165754 166836;166837;166838;166839 166838 4 SSPGQTPEEGAQALAEFAALHGPALR ______________________________ QALAEFAALHGPALRASGVPERYWGRLLHK R S S L R A 6 1 0 0 0 2 3 3 1 0 3 0 0 1 3 2 1 0 0 0 0 0 26 0 2604.2932 Q14166 Q14166 15 40 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 3 0.022603 13.567 By MS/MS By matching By matching 2 1 1 0.65118 0.64057 23.601 4 Median 0.65118 0.64057 3.6025 2 0 Median 1.1484 0.99423 NaN 1 0 Median 0.56202 0.594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10595000 5925300 4670200 6770000 4162600 2607400 2173800 831400 1342400 1651700 931290 720410 0 0 0 0 0 0 0 0 0 31701 2861 33333 165755;165756;165757;165758 166840;166841;166842 166840 3 SSPSVLIHSLGK PSLGKPGETSPPDSKSSPSVLIHSLGKSTT DSKSSPSVLIHSLGKSTTDNDVRIQQLQEI K S S G K S 0 0 0 0 0 0 0 1 1 1 2 1 0 0 1 4 0 0 0 1 0 0 12 0 1223.6874 Q9P0K7 Q9P0K7 411 422 RAI14 Ankycorbin yes yes 2 0.00061737 67.334 By matching By MS/MS By MS/MS 1 1 2 1.0774 0.92308 28.122 4 Median NaN NaN NaN 0 0 Median 1.3929 1.2195 NaN 1 0 Median 0.59359 0.64223 NaN 1 0 Median 1.0774 0.92308 17.29 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9744500 5178400 4566200 0 0 0 1289800 586750 703000 5428700 3260000 2168700 3026100 1331600 1694500 0 0 0 0 0 0 31702 4204 33334 165759;165760;165761;165762 166843;166844 166843 2 SSPTVYNSPTDKEDYMTDLR TVGPVESSGLRSRYRSSPTVYNSPTDKEDY YNSPTDKEDYMTDLRTLDTFLRSEEEKQHR R S S L R T 0 1 1 3 0 0 1 0 0 0 1 1 1 0 2 3 3 0 2 1 0 0 20 1 2318.0373 Q96SK2 Q96SK2 221 240 TMEM209 Transmembrane protein 209 yes yes 3 9.517E-10 85.42 By MS/MS By matching By MS/MS 1 2 1 0.87173 0.8086 11.434 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66509 0.74971 NaN 1 0 Median 0.87173 0.8086 6.6461 2 0 Median 0.93783 0.96621 NaN 1 0 Median NaN NaN NaN 0 0 Median 42694000 23885000 18809000 0 0 0 0 0 0 34203000 19993000 14209000 2668600 1290400 1378200 5822700 2601800 3220900 0 0 0 31703 3735 33335 165763;165764;165765;165766 166845;166846;166847 166845 3 SSPVVNDGVVR NNEDVDALMKSLQVKSSPVVNDGVVRLRGL LQVKSSPVVNDGVVRLRGLPYSCNEKDIVD K S S V R L 0 1 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 4 0 0 11 0 1127.5935 H0Y8R1;F5H5I6;H0YAK1;Q12849;H0YAM1 H0Y8R1 180 190 GRSF1 G-rich sequence factor 1 yes no 2 0.00075665 63.184 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.1629 1.0711 34.491 6 Median 1.0588 1.0468 NaN 1 0 Median 1.6243 1.5895 60.726 2 0 Median 1.0999 1.096 NaN 1 0 Median 1.6584 1.4289 NaN 1 0 Median 1.0045 1.0102 NaN 1 0 Median NaN NaN NaN 0 0 Median 37745000 16724000 21021000 4272700 1986300 2286500 13889000 5747100 8141500 6767200 3181500 3585700 10842000 4820200 6022200 1974200 989060 985150 0 0 0 31704 1035 33336 165767;165768;165769;165770;165771;165772 166848;166849;166850;166851;166852;166853;166854 166854 7 SSQEEEPVDPQLMR SVLCEIKEKTGLSIRSSQEEEPVDPQLMRL RSSQEEEPVDPQLMRLDNMLLAEGVAGPEK R S S M R L 0 1 0 1 0 2 3 0 0 0 1 0 1 0 2 2 0 0 0 1 0 0 14 0 1643.7461 P40425 P40425 104 117 PBX2 Pre-B-cell leukemia transcription factor 2 yes yes 2 0.00016133 79.82 By MS/MS By matching 1 3 0.75452 0.65449 8.9904 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58527 0.58033 NaN 1 0 Median 0.79153 0.6881 6.5445 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12699000 7195900 5503100 0 0 0 0 0 0 7937800 4818400 3119400 4761200 2377500 2383700 0 0 0 0 0 0 31705 2286 33337 165773;165774;165775;165776 166855 166855 1 SSQEQGELQGR LVRETEAALSREQQRSSQEQGELQGRLAER EQQRSSQEQGELQGRLAERESQEQGLRQRL R S S G R L 0 1 0 0 0 3 2 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1217.5636 O75146 O75146 591 601 HIP1R Huntingtin-interacting protein 1-related protein yes yes 2 0.006947 43.282 By matching By MS/MS 1 1 1.0728 0.9857 11.273 2 Median 1.1176 1.0675 NaN 1 0 Median 1.0299 0.91018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2200500 964170 1236400 1385600 637660 747900 814970 326520 488450 0 0 0 0 0 0 0 0 0 0 0 0 31706 1647 33338 165777;165778 166856;166857 166856 2 SSQGASNFDKLMDGTSQALAK RPTNCRTYCRANKTKSSQGASNFDKLMDGT NFDKLMDGTSQALAKANSESSKDGLNQAKK K S S A K A 3 0 1 2 0 2 0 2 0 0 2 2 1 1 0 4 1 0 0 0 0 0 21 1 2155.0215 Q7Z5K2 Q7Z5K2 304 324 WAPAL Wings apart-like protein homolog yes yes 3 6.7949E-09 54.637 By MS/MS 1 0.93798 1.0799 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93798 1.0799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6934700 3251100 3683600 0 0 0 0 0 0 6934700 3251100 3683600 0 0 0 0 0 0 0 0 0 31707 3249 33339 165779 166858;166859 166858 2 SSQIGAVVSHQSSVIPDR LPEEEAECYFHSRPKSSQIGAVVSHQSSVI IGAVVSHQSSVIPDREYLRKKNEELEQLYQ K S S D R E 1 1 0 1 0 2 0 1 1 2 0 0 0 0 1 5 0 0 0 3 0 0 18 0 1865.9595 J3QQZ9;Q9NVS9;J3QQV6 J3QQZ9 141 158 PNPO Pyridoxine-5-phosphate oxidase yes no 3 9.7447E-07 79.013 By MS/MS By MS/MS 1 1 1.0666 0.95696 0.58416 2 Median 1.004 0.95302 NaN 1 0 Median 1.1331 0.96092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17955000 9292400 8662800 15550000 8210500 7339800 2404900 1081900 1323000 0 0 0 0 0 0 0 0 0 0 0 0 31708 1346 33340 165780;165781 166860;166861;166862;166863 166860 4 SSQIGAVVSHQSSVIPDREYLR LPEEEAECYFHSRPKSSQIGAVVSHQSSVI VSHQSSVIPDREYLRKKNEELEQLYQDQEV K S S L R K 1 2 0 1 0 2 1 1 1 2 1 0 0 0 1 5 0 0 1 3 0 0 22 1 2427.2506 J3QQZ9;Q9NVS9;J3QQV6 J3QQZ9 141 162 PNPO Pyridoxine-5-phosphate oxidase yes no 3 4.9678E-68 168.64 By MS/MS 2 0.90235 0.96456 2.0395 2 Median 0.90235 0.96456 2.0395 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129580000 63047000 66534000 129580000 63047000 66534000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31709 1346 33341 165782;165783 166864;166865 166865 2 SSQIVDPWER KRSSQKYIIEGLTEKSSQIVDPWERLFKIL GLTEKSSQIVDPWERLFKILNVVGMRCEWQ K S S E R L 0 1 0 1 0 1 1 0 0 1 0 0 0 0 1 2 0 1 0 1 0 0 10 0 1215.5884 Q9NVR2;H0YBW3 Q9NVR2 249 258 INTS10 Integrator complex subunit 10 yes no 2 0.029426 47.603 By MS/MS 1 0.71871 0.75547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71871 0.75547 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4496700 2892900 1603800 0 0 0 0 0 0 4496700 2892900 1603800 0 0 0 0 0 0 0 0 0 31710 4139 33342 165784 166866 166866 1 SSQLLEPAVEETTKK QELQITTGRESKRLKSSQLLEPAVEETTKK SSQLLEPAVEETTKKEVKVSSVTKRTPRRI K S S K K E 1 0 0 0 0 1 3 0 0 0 2 2 0 0 1 2 2 0 0 1 0 0 15 1 1658.8727 Q8WYP5 Q8WYP5 1846 1860 AHCTF1 Protein ELYS yes yes 2;3 0.012601 38.634 By MS/MS 3 1.0473 1.211 32.56 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0473 1.211 32.56 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19044000 10097000 8947400 0 0 0 0 0 0 19044000 10097000 8947400 0 0 0 0 0 0 0 0 0 31711 3524 33343 165785;165786;165787 166867;166868;166869 166867 3 SSQLNNPQFVWVVPALR GEWSGLEKNKKDGFKSSQLNNPQFVWVVPA QLNNPQFVWVVPALRQLHEITRSFIKQTYQ K S S L R Q 1 1 2 0 0 2 0 0 0 0 2 0 0 1 2 2 0 1 0 3 0 0 17 0 1954.0425 Q9UPU5 Q9UPU5 621 637 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 0.0034952 33.409 By MS/MS 2 0.73401 0.73512 2.6748 2 Median 0.73401 0.73512 2.6748 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3688700 2091400 1597300 3688700 2091400 1597300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31712 4357 33344 165788;165789 166870;166871;166872 166870 3 SSQMPRPSVPPLVK KKLNSPEETAFQTPKSSQMPRPSVPPLVKT KSSQMPRPSVPPLVKTSLFSSKLSTPDVVS K S S V K T 0 1 0 0 0 1 0 0 0 0 1 1 1 0 4 3 0 0 0 2 0 0 14 1 1521.8337 Q9BTX1 Q9BTX1 417 430 NDC1 Nucleoporin NDC1 yes yes 2;3 0.00097915 56.359 By matching By MS/MS 1 2 0.55112 0.62095 2.8383 3 Median NaN NaN NaN 0 0 Median 0.70892 0.60206 NaN 1 0 Median 0.54329 0.62901 1.8243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14290000 9479200 4810600 0 0 0 813600 476300 337300 13476000 9002900 4473300 0 0 0 0 0 0 0 0 0 31713 3831 33345 165790;165791;165792 166873;166874;166875 166874 3 SSQPPADRDPAPFR DSGSLFSPSKEEARRSSQPPADRDPAPFRA RSSQPPADRDPAPFRAEPTHWCLLVRENGT R S S F R A 2 2 0 2 0 1 0 0 0 0 0 0 0 1 4 2 0 0 0 0 0 0 14 1 1539.743 Q10570 Q10570 765 778 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 3 0.0036731 33.195 By MS/MS By matching 1 1 0.58801 0.5866 12.228 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48955 0.53801 NaN 1 0 Median 0.70628 0.63958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4185000 2612900 1572200 0 0 0 0 0 0 2685000 1908400 776540 1500100 704440 795620 0 0 0 0 0 0 31714 2753 33346 165793;165794 166876;166877;166878 166876 3 SSQQPSTPQQAPPGQPQQGTFVAHK STQPPKSAKPPAGGKSSQQPSTPQQAPPGQ APPGQPQQGTFVAHKEIKLTLLNKAADKGS K S S H K E 2 0 0 0 0 7 0 2 1 0 0 1 0 1 5 3 2 0 0 1 0 0 25 0 2630.2837 Q86VM9;E7ERS3;H3BRH3 Q86VM9 790 814 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 3 0.010566 17.502 By matching By MS/MS 1 1 0.46685 0.44848 4.2821 2 Median NaN NaN NaN 0 0 Median 0.49452 0.4351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44074 0.46227 NaN 1 0 Median NaN NaN NaN 0 0 Median 6505200 3954500 2550700 0 0 0 1900000 1187100 712810 0 0 0 0 0 0 4605200 2767400 1837900 0 0 0 31715 884 33347 165795;165796 166879 166879 1 SSQSSSQQFSGIGR GAGTYGASSTTSTGRSSQSSSQQFSGIGRS RSSQSSSQQFSGIGRSGQQPQPLMSQQFAQ R S S G R S 0 1 0 0 0 3 0 2 0 1 0 0 0 1 0 6 0 0 0 0 0 0 14 0 1454.675 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 671 684 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 5.0882E-55 231.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 3 5 1.1599 1.0074 19.019 14 Median 1.2982 1.2609 NaN 1 1 Median 1.1626 1.0068 9.4271 2 0 Median 0.88562 0.88448 NaN 1 0 Median 1.1108 0.94351 0.40736 2 0 Median 1.0443 1.0642 28.305 3 1 Median 1.2571 1.057 21.579 5 1 Median 137380000 68703000 68680000 3327100 1475500 1851500 10842000 4974300 5868000 86527000 44967000 41560000 11684000 5569200 6114500 14052000 7001700 7050700 10951000 4715300 6235200 31716 343 33348 165797;165798;165799;165800;165801;165802;165803;165804;165805;165806;165807;165808;165809;165810 166880;166881;166882;166883;166884;166885;166886;166887;166888;166889;166890;166891;166892;166893;166894;166895;166896;166897;166898 166882 19 SSQTSGTNEQSSAIVSAR QSQLTEKDSMIENMKSSQTSGTNEQSSAIV TSGTNEQSSAIVSARDSEQVAELKQELATL K S S A R D 2 1 1 0 0 2 1 1 0 1 0 0 0 0 0 6 2 0 0 1 0 0 18 0 1808.85 O60763 O60763 765 782 USO1 General vesicular transport factor p115 yes yes 2 1.3118E-12 142.38 By MS/MS By MS/MS 1 1 1.4451 1.3072 11.283 2 Median 1.2437 1.207 NaN 1 0 Median 1.6792 1.4158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8850800 3591000 5259700 3465400 1582700 1882700 5385400 2008300 3377100 0 0 0 0 0 0 0 0 0 0 0 0 31717 1630 33349 165811;165812 166899;166900;166901;166902 166902 4 SSRAGLQFPVGR RGKQGGKARAKAKTRSSRAGLQFPVGRVHR KTRSSRAGLQFPVGRVHRLLRKGNYSERVG R S S G R V 1 2 0 0 0 1 0 2 0 0 1 0 0 1 1 2 0 0 0 1 0 0 12 1 1273.6891 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;A0A3B3IS11;Q93077;Q7L7L0;P04908;P16104;Q96QV6;Q8IUE6 A0A0U1RR32 19 30 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;H2AFX;HIST1H2AA;HIST2H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B no no 2;3 0.0001178 129.85 By MS/MS By MS/MS 4 3 0.84119 0.9235 76.201 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8185 0.89568 7.0491 4 0 Median 1.1346 0.97342 119.63 3 0 Plateau 86377000 48282000 38095000 0 0 0 0 0 0 0 0 0 0 0 0 67822000 38170000 29652000 18554000 10112000 8442700 31718 308;1856;2024;3312 33350 165813;165814;165815;165816;165817;165818;165819 166903;166904;166905;166906;166907;166908;166909;166910;166911;166912 166905 10 SSSADFGTFNTSQSHQTASAVSK ASVNANFAHFDNFPKSSSADFGTFNTSQSH FNTSQSHQTASAVSKVS_____________ K S S S K V 3 0 1 1 0 2 0 1 1 0 0 1 0 2 0 7 3 0 0 1 0 0 23 0 2344.0567 C9J2I0;B8ZZY2;P52594 C9J2I0 213 235 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 yes no 3 2.2612E-05 36.9 By MS/MS By MS/MS By matching 1 1 1 1.4053 1.1991 6.2994 3 Median 1.1801 1.1126 NaN 1 0 Median 1.4654 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4053 1.1991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14856000 6875200 7980600 9924300 4515500 5408800 3003300 1561300 1442100 0 0 0 1928100 798370 1129700 0 0 0 0 0 0 31719 653 33351 165820;165821;165822 166913;166914 166913 2 SSSAEESGQDVLENTFSQK REVSEISIVDIANKRSSSAEESGQDVLENT EESGQDVLENTFSQKHKELSVLLLEMKEAQ R S S Q K H 1 0 1 1 0 2 3 1 0 0 1 1 0 1 0 5 1 0 0 1 0 0 19 0 2041.9076 Q14789;E7EU81;H0Y867 Q14789 537 555 GOLGB1 Golgin subfamily B member 1 yes no 2 7.5472E-13 99.531 By MS/MS By matching 1 1 1.0666 1.0035 0.18815 2 Median 0.99945 1.0021 NaN 1 0 Median 1.1383 1.0048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14955000 6445400 8510000 14232000 6062700 8169100 723570 382710 340860 0 0 0 0 0 0 0 0 0 0 0 0 31720 2900 33352 165823;165824 166915;166916 166916 2 SSSDSFEQFRR SLVQKHPTTPSSTAKSSSDSFEQFRRAARE STAKSSSDSFEQFRRAAREKEEREKALKAQ K S S R R A 0 2 0 1 0 1 1 0 0 0 0 0 0 2 0 4 0 0 0 0 0 0 11 1 1344.6058 O60885 O60885 1219 1229 BRD4 Bromodomain-containing protein 4 yes yes 3 0.038984 17.167 By MS/MS By matching 1 1 0.85131 0.91052 12.808 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78911 0.99683 NaN 1 0 Median 0.91842 0.83169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5611400 3222500 2388900 0 0 0 0 0 0 5067400 2987400 2080000 544060 235110 308950 0 0 0 0 0 0 31721 1638 33353 165825;165826 166917 166917 1 SSSEDKITVHFINR SAEASRSLSVSARARSSSEDKITVHFINRD RSSSEDKITVHFINRDGETLTTKGKVGDSL R S S N R D 0 1 1 1 0 0 1 0 1 2 0 1 0 1 0 3 1 0 0 1 0 0 14 1 1631.8267 P10109 P10109 61 74 FDX1 Adrenodoxin, mitochondrial yes yes 3;4 2.2478E-08 139.86 By MS/MS By MS/MS 2 2 1.3873 1.2908 18.243 4 Median 1.141 1.1188 0.9023 2 0 Median 1.732 1.5291 4.6419 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25408000 9932000 15476000 7945700 3688200 4257500 17462000 6243800 11219000 0 0 0 0 0 0 0 0 0 0 0 0 31722 1933 33354 165827;165828;165829;165830 166918;166919;166920;166921;166922;166923;166924;166925 166922 8 SSSGLLEWESK KRPSSVKVFSGKSERSSSGLLEWESKSDAL KSERSSSGLLEWESKSDALETLGFLNHYQM R S S S K S 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 4 0 1 0 0 0 0 11 0 1221.5877 A0A3B3ITJ4;M0QXS5;M0R076;P14866;M0QYT0 P14866 542 552 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.00013373 107.21 By matching By MS/MS By MS/MS By MS/MS By matching 2 9 6 7 3 1.1043 1.0511 8.1553 27 Median NaN NaN NaN 0 0 Median 1.3543 1.1762 17.094 2 0 Median 1.0669 1.0202 5.9359 9 2 Median 1.2914 1.1269 6.6717 6 0 Median 1.0439 1.0906 5.6422 7 0 Median 1.2336 1.0087 7.948 3 0 Median 577240000 271090000 306140000 0 0 0 5656600 2523600 3133000 233830000 111390000 122440000 25060000 10389000 14671000 271090000 129180000 141910000 41605000 17609000 23996000 31723 2011;436;1419 33355 165831;165832;165833;165834;165835;165836;165837;165838;165839;165840;165841;165842;165843;165844;165845;165846;165847;165848;165849;165850;165851;165852;165853;165854;165855;165856;165857 166926;166927;166928;166929;166930;166931;166932;166933;166934;166935;166936;166937;166938;166939;166940;166941;166942;166943;166944;166945;166946;166947;166948;166949;166950;166951;166952;166953;166954;166955;166956;166957;166958 166929 33 SSSLEMTPYNTPQLSPATTPANKK LDNLLANLPPAKPGKSSSLEMTPYNTPQLS NTPQLSPATTPANKKNRLPIATRSRSRTNM K S S K K N 2 0 2 0 0 1 1 0 0 0 2 2 1 0 4 4 4 0 1 0 0 0 24 1 2562.2636 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;H0Y7I9;H0Y4E7;A0A0A0MQV8 Q14C86 452 475 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 4.0871E-05 33.187 By MS/MS 1 0.61896 0.59423 NaN 1 Median 0.61896 0.59423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13935000 7484500 6451000 13935000 7484500 6451000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31724 2907 33356 165858 166959 166959 1 SSSLQDFDIR AEPTVRKHFLRKWLKSSSLQDFDIRAILDW RKWLKSSSLQDFDIRAILDWDYYIERLGSA K S S I R A 0 1 0 2 0 1 0 0 0 1 1 0 0 1 0 3 0 0 0 0 0 0 10 0 1166.5568 Q07864;F5H1D6 Q07864 1116 1125 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.0056602 65.305 By MS/MS 1 1.5116 1.6675 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5116 1.6675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4733900 2329700 2404300 0 0 0 0 0 0 4733900 2329700 2404300 0 0 0 0 0 0 0 0 0 31725 1020 33357 165859 166960 166960 1 SSSNLALALYR KDLSAENGLESLMLRSSSNLALALYRYHSY LMLRSSSNLALALYRYHSYKDLSEFLRGLV R S S Y R Y 2 1 1 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 1 0 0 0 11 0 1193.6404 O75976 O75976 922 932 CPD Carboxypeptidase D no no 2 0.00020977 99.802 By MS/MS By MS/MS 1 1 1.0345 0.92411 14.265 2 Median 0.89005 0.83544 NaN 1 0 Median 1.2024 1.0222 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14709000 7211100 7497800 11297000 5633000 5664500 3411400 1578100 1833300 0 0 0 0 0 0 0 0 0 0 0 0 31726 1714 33358 165860;165861 166961;166962 166961 2 SSSPAPADIAQTVQEDLR PEPVLEETAPEDAQKSSSPAPADIAQTVQE PAPADIAQTVQEDLRTFSWASVTSKNLPPS K S S L R T 3 1 0 2 0 2 1 0 0 1 1 0 0 0 2 3 1 0 0 1 0 0 18 0 1883.9225 Q13283 Q13283 230 247 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 5.3059E-06 62.14 By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 0.70829 0.66245 17.554 6 Median 0.79778 0.75543 NaN 1 0 Median 0.85927 0.755 21.321 2 0 Median 0.66862 0.67583 NaN 1 0 Median 0.6494 0.54716 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65238 0.57273 NaN 1 0 Median 30859000 18031000 12827000 16056000 9161100 6895400 5559400 3174100 2385300 8661700 5395500 3266200 258360 137160 121200 0 0 0 322720 163660 159050 31727 2803 33359 165862;165863;165864;165865;165866;165867 166963;166964;166965;166966;166967 166967 5 SSSPELVTHLK PSDEMPDFPKSDDSKSSSPELVTHLKWDDP DDSKSSSPELVTHLKWDDPYYDIARHQIVE K S S L K W 0 0 0 0 0 0 1 0 1 0 2 1 0 0 1 3 1 0 0 1 0 0 11 0 1196.6401 Q07960;H0YE29;E9PNR6 Q07960 49 59 ARHGAP1 Rho GTPase-activating protein 1 yes no 2 0.0059542 45.137 By MS/MS By matching 1 1 1.0509 1.072 9.6128 2 Median 1.0205 1.0015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0822 1.1474 NaN 1 0 Median NaN NaN NaN 0 0 Median 3839700 2065400 1774300 1310000 713580 596470 0 0 0 0 0 0 0 0 0 2529600 1351800 1177800 0 0 0 31728 2734 33360 165868;165869 166968 166968 1 SSSPVNVKK ______________________________ ______________________________ M S S K K L 0 0 1 0 0 0 0 0 0 0 0 2 0 0 1 3 0 0 0 2 0 0 9 1 944.5291 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 2 10 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.01111 42.109 By matching By matching By MS/MS By matching 3 1 4 3 0.92595 0.95416 18.515 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9187 1.0497 19.494 3 0 Plateau 1.3847 1.0008 NaN 1 0 Median 0.83165 0.86146 26.499 4 0 Median 1.0601 0.96064 8.9395 3 0 Median 11692000 6126900 5564900 0 0 0 0 0 0 1320600 720390 600250 202940 94462 108480 8216300 4445400 3770900 1952000 866700 1085300 31729 2680 33361 165870;165871;165872;165873;165874;165875;165876;165877;165878;165879;165880 166969;166970 166969 2 SSSQYIESFWQSSQSQNFTAHDK ARSRDSDESGDKTTRSSSQYIESFWQSSQS FWQSSQSQNFTAHDKQPSVLSSGYQKTPQE R S S D K Q 1 0 1 1 0 4 1 0 1 1 0 1 0 2 0 7 1 1 1 0 0 0 23 0 2691.1837 A0A0A0MSK5;Q5JTV8;H0YDU3;H0YD16;H0Y4R4;J3KN66 J3KN66 253 275 TOR1AIP1 Torsin-1A-interacting protein 1 no no 3 1.4457E-11 51.503 By MS/MS 1 0.80274 0.77973 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80274 0.77973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12473000 7194500 5278200 0 0 0 0 0 0 12473000 7194500 5278200 0 0 0 0 0 0 0 0 0 31730 182;1302 33362 165881 166971 166971 1 SSSSGHYVSWVK CGYYDLQAVLTHQGRSSSSGHYVSWVKRKQ QGRSSSSGHYVSWVKRKQDEWIKFDDDKVS R S S V K R 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 5 0 1 1 2 0 0 12 0 1322.6255 A6NJA2;P54578 A6NJA2 384 395 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.00012285 146.11 By MS/MS By MS/MS By matching 1 1 1 1.0823 1.0212 31.197 3 Median 1.0823 1.0212 NaN 1 0 Median 1.3715 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74592 0.64634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14313000 7023200 7290100 9616900 4878300 4738700 3839200 1763600 2075600 0 0 0 857120 381330 475790 0 0 0 0 0 0 31731 523 33363 165882;165883;165884 166972;166973;166974 166972 3 SSSSSAASDTATSTQRPLR GYAILLAVPGSSDSRSSSSSAASDTATSTQ SAASDTATSTQRPLRNLVSYLKQKQAAGVI R S S L R N 3 2 0 1 0 1 0 0 0 0 1 0 0 0 1 7 3 0 0 0 0 0 19 1 1908.9137 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 827 845 RBM15 Putative RNA-binding protein 15 yes no 3 0.065122 8.9317 By matching By MS/MS By matching 1 1 1 1.0575 1.0351 3.4283 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89586 1.0351 NaN 1 0 Median 1.0575 1.0352 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0791 0.97551 NaN 1 0 Median 2807800 1543000 1264700 0 0 0 0 0 0 2027000 1130400 896610 467310 261090 206220 0 0 0 313500 151580 161920 31732 60 33364 165885;165886;165887 166975 166975 1 SSSSSSQPEHSAMLVSTAASPSLIK LFISCKSSHDRCLEKSSSSSSQPEHSAMLV SAMLVSTAASPSLIKETTTGYYKDIVENIC K S S I K E 3 0 0 0 0 1 1 0 1 1 2 1 1 0 2 10 1 0 0 1 0 0 25 0 2488.2115 P42166 P42166 291 315 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 4.8065E-19 75.326 By MS/MS By MS/MS 4 4 0.83087 0.75088 17.569 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80918 0.79955 16.887 4 0 Median 0.83087 0.72083 20.835 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109680000 61178000 48499000 0 0 0 0 0 0 104400000 58411000 45986000 5280700 2766900 2513900 0 0 0 0 0 0 31733 2306 33365;33366 165888;165889;165890;165891;165892;165893;165894;165895 166976;166977;166978;166979 166978 1053 4 SSSSYHTWNTGTEGPFVER LLSRHLEEKQLSEGKSSSSYHTWNTGTEGP YHTWNTGTEGPFVERVTAVWKSIFSLDTPE K S S E R V 0 1 1 0 0 0 2 2 1 0 0 0 0 1 1 4 3 1 1 1 0 0 19 0 2140.945 Q8TEQ6 Q8TEQ6 1141 1159 GEMIN5 Gem-associated protein 5 yes yes 3 3.046E-08 65.47 By MS/MS By matching By matching 1 1 1 0.95926 0.90186 19.166 3 Plateau 0.95926 0.90186 NaN 1 0 Median 0.70968 0.62756 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94868 0.83778 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10619000 5528900 5090500 9239600 4818200 4421400 535470 318550 216920 0 0 0 844260 392100 452160 0 0 0 0 0 0 31734 3478 33367 165896;165897;165898 166980;166981 166980 2 SSSTFSGIK LFNEMIQENGYNFDRSSSTFSGIKELARRF GYNFDRSSSTFSGIKELARRFALTFGLDQL R S S I K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 4 1 0 0 0 0 0 9 0 912.45526 Q8N3U4 Q8N3U4 941 949 STAG2 Cohesin subunit SA-2 yes yes 2 0.068322 41.448 By MS/MS 1 0.89692 0.96919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89692 0.96919 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2550500 1437900 1112700 0 0 0 0 0 0 2550500 1437900 1112700 0 0 0 0 0 0 0 0 0 31735 3369 33368 165899 166982 166982 1 SSSTGNLLDKDDLAIPPPDYGAASR SDGSDRLHMSLQQGKSSSTGNLLDKDDLAI DDLAIPPPDYGAASRAFPAQTASGFKQRPY K S S S R A 3 1 1 4 0 0 0 2 0 1 3 1 0 0 3 4 1 0 1 0 0 0 25 1 2559.2453 Q9UQB8;I3L4C2;I3L3C6;B4DWA1 Q9UQB8 452 476 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 3 0.0014169 33.187 By MS/MS 1 5.4502 6.1218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.4502 6.1218 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15064000 2531700 12533000 0 0 0 0 0 0 15064000 2531700 12533000 0 0 0 0 0 0 0 0 0 31736 4361 33369 165900 166983 166983 1 SSSVGSSSSYPISPAVSR FADMLSGNAGGFRSRSSSVGSSSSYPISPA VGSSSSYPISPAVSRTQLASWSDPTEETGP R S S S R T 1 1 0 0 0 0 0 1 0 1 0 0 0 0 2 9 0 0 1 2 0 0 18 0 1753.8483 Q15149;H0YDN1 Q15149 4384 4401 PLEC Plectin yes no 2 1.4911E-12 129.71 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 2 1 1 1 1 1.0148 1.0101 19.062 7 Median 0.8602 0.84091 NaN 1 0 Median 0.99253 0.82037 4.8758 2 0 Median 1.2206 1.3599 NaN 1 0 Median 1.1607 1.0101 NaN 1 0 Median 1.0148 1.0644 NaN 1 0 Median 1.2881 1.1044 NaN 1 0 Median 40054000 19562000 20493000 13128000 6980200 6147700 12423000 6063300 6359400 7905100 3323900 4581200 1175300 554990 620320 4116100 2256200 1859900 1307200 383060 924160 31737 2933 33370 165901;165902;165903;165904;165905;165906;165907 166984;166985;166986;166987;166988;166989 166985 6 SSTAISSIAADGEFLHELEEK QQRLEYIARAILSAKSSTAISSIAADGEFL SIAADGEFLHELEEKMEVARIQLQIQETLQ K S S E K M 3 0 0 1 0 0 4 1 1 2 2 1 0 1 0 4 1 0 0 0 0 0 21 0 2233.075 O75694;E9PF10 O75694 1127 1147 NUP155 Nuclear pore complex protein Nup155 yes no 3 7.9186E-08 63.184 By MS/MS 1 0.97886 1.0576 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97886 1.0576 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5732300 2900300 2832100 0 0 0 0 0 0 5732300 2900300 2832100 0 0 0 0 0 0 0 0 0 31738 1692 33371 165908 166990 166990 1 SSTAMEMLQTQLK ILQEKEQEKVQMKEKSSTAMEMLQTQLKEL EKSSTAMEMLQTQLKELNERVAALHNDQEA K S S L K E 1 0 0 0 0 2 1 0 0 0 2 1 2 0 0 2 2 0 0 0 0 0 13 0 1466.7109 P49454 P49454 2436 2448 CENPF Centromere protein F yes yes 2 0.0081102 55.426 By MS/MS 1 1.6457 1.7602 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6457 1.7602 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9971600 4122500 5849100 0 0 0 0 0 0 9971600 4122500 5849100 0 0 0 0 0 0 0 0 0 31739 2383 33372 165909 166991 166991 1 SSTATHPPGPAVQLNK DTPFLPKPLFFRRAKSSTATHPPGPAVQLN STATHPPGPAVQLNKTPSSSKKVTFGLNRN K S S N K T 2 0 1 0 0 1 0 1 1 0 1 1 0 0 3 2 2 0 0 1 0 0 16 0 1603.8318 Q14684 Q14684 661 676 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.0020232 30.133 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 0.62579 0.60925 46.338 6 Median NaN NaN NaN 0 0 Median 1.9378 1.7103 NaN 1 0 Median 0.5955 0.65039 NaN 1 0 Median 0.85175 0.71192 18.325 3 0 Plateau NaN NaN NaN 0 0 Median 0.59673 0.49595 NaN 1 0 Median 16919000 9172600 7746500 0 0 0 2425100 368410 2056700 10123000 6202300 3920300 3380600 2015900 1364700 0 0 0 990840 585980 404860 31740 2890 33373 165910;165911;165912;165913;165914;165915 166992;166993;166994;166995;166996;166997;166998 166996 7 SSTDSLPGPISR KIINYLRERKERLMRSSTDSLPGPISRQPL LMRSSTDSLPGPISRQPLGATSGASLKTQP R S S S R Q 0 1 0 1 0 0 0 1 0 1 1 0 0 0 2 4 1 0 0 0 0 0 12 0 1215.6095 Q9HCD5 Q9HCD5 377 388 NCOA5 Nuclear receptor coactivator 5 yes yes 2 0.00089244 80.706 By MS/MS By MS/MS 1 1 0.61074 0.62287 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61074 0.62287 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9965400 5722700 4242800 0 0 0 0 0 0 9965400 5722700 4242800 0 0 0 0 0 0 0 0 0 31741 4028 33374 165916;165917 166999;167000 167000 2 SSTEEEMEIEK PTEPQSEEQLSKHDKSSTEEEMEIEKIKHK KHDKSSTEEEMEIEKIKHKLQEKEELISTL K S S E K I 0 0 0 0 0 0 5 0 0 1 0 1 1 0 0 2 1 0 0 0 0 0 11 0 1310.5548 Q14789;E7EU81;H0Y867 Q14789 138 148 GOLGB1 Golgin subfamily B member 1 yes no 2 0.00015008 89.029 By MS/MS 1 0.93201 0.81802 NaN 1 Median NaN NaN NaN 0 0 Median 0.93201 0.81802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7638500 3414900 4223600 0 0 0 7638500 3414900 4223600 0 0 0 0 0 0 0 0 0 0 0 0 31742 2900 33375 165918 167001 167001 1 SSTETCYSAIPK SANETSSILVESVTRSSTETCYSAIPKASS VTRSSTETCYSAIPKASSDASKVTSKGAGL R S S P K A 1 0 0 0 1 0 1 0 0 1 0 1 0 0 1 3 2 0 1 0 0 0 12 0 1342.6075 O75369;E7EN95;A0A0A0MT44 O75369 2496 2507 FLNB Filamin-B yes no 2 0.0010626 57.532 By MS/MS 1 1.1043 0.97435 NaN 1 Median NaN NaN NaN 0 0 Median 1.1043 0.97435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9770000 4397100 5372900 0 0 0 9770000 4397100 5372900 0 0 0 0 0 0 0 0 0 0 0 0 31743 1664 33376 165919 167002 167002 1 SSTFEAVLK YKEAVGAFVVFDISRSSTFEAVLKWKSDLD VFDISRSSTFEAVLKWKSDLDSKVHLPNGS R S S L K W 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 9 0 980.51786 Q13637 Q13637 111 119 RAB32 Ras-related protein Rab-32 yes yes 2 0.069107 26.693 By matching By MS/MS 1 1 0.84877 0.75389 21.623 2 Median 0.94288 0.87843 NaN 1 0 Median 0.76406 0.647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6821000 3243200 3577900 4483000 2059900 2423200 2338000 1183300 1154700 0 0 0 0 0 0 0 0 0 0 0 0 31744 2833 33377 165920;165921 167003 167003 1 SSTFLSHSISNQANVHQSVISSWLSTDPAK TDVPEKSSLFHQGGRSSTFLSHSISNQANV HQSVISSWLSTDPAKDRIEITSLLPSRSLS R S S A K D 2 0 2 1 0 2 0 0 2 2 2 1 0 1 1 9 2 1 0 2 0 0 30 0 3227.5847 Q8NFH3 Q8NFH3 308 337 NUP43 Nucleoporin Nup43 yes yes 3;4 3.4201E-05 27.686 By MS/MS By matching By matching 5 1 2 0.65137 0.67778 39.264 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87327 0.90272 37.472 3 0 Median NaN NaN NaN 0 0 Median 0.44832 0.47629 NaN 1 0 Median NaN NaN NaN 0 0 Median 77729000 57055000 20674000 0 0 0 0 0 0 64999000 47783000 17215000 1965600 1442300 523270 10765000 7829900 2935200 0 0 0 31745 3435 33378 165922;165923;165924;165925;165926;165927;165928;165929 167004;167005;167006 167004 3 SSTFLSHSISNQANVHQSVISSWLSTDPAKDR TDVPEKSSLFHQGGRSSTFLSHSISNQANV SVISSWLSTDPAKDRIEITSLLPSRSLSVN R S S D R I 2 1 2 2 0 2 0 0 2 2 2 1 0 1 1 9 2 1 0 2 0 0 32 1 3498.7128 Q8NFH3 Q8NFH3 308 339 NUP43 Nucleoporin Nup43 yes yes 4 1.586E-09 44.893 By MS/MS 1 0.98747 1.1254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98747 1.1254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18524000 9167400 9356500 0 0 0 0 0 0 18524000 9167400 9356500 0 0 0 0 0 0 0 0 0 31746 3435 33379 165930 167007 167007 1 SSTGPEPPAPTPLLAER KKEKSATRPSPSPERSSTGPEPPAPTPLLA TGPEPPAPTPLLAERHGGSPQPLATTPLSQ R S S E R H 2 1 0 0 0 0 2 1 0 0 2 0 0 0 5 2 2 0 0 0 0 0 17 0 1718.8839 Q9UQ35;I3L4D8;I3L1I8;I3L182 Q9UQ35 357 373 SRRM2 Serine/arginine repetitive matrix protein 2 yes no 2 7.6339E-12 131.26 By MS/MS By MS/MS 2 3 0.52803 0.46941 9.985 5 Median 0.51797 0.49521 7.5676 2 1 Median 0.52803 0.44062 10.595 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40910000 27889000 13020000 32468000 22360000 10108000 8442000 5529500 2912500 0 0 0 0 0 0 0 0 0 0 0 0 31747 4359 33380 165931;165932;165933;165934;165935 167008;167009;167010;167011;167012;167013 167009 6 SSTHGEAAAETDSRPADEDMWDETELGLYK DTDSGCCLGQSESDKSSTHGEAAAETDSRP ADEDMWDETELGLYKVNEYVDARDTNMGAW K S S Y K V 4 1 0 4 0 0 5 2 1 0 2 1 1 0 1 3 3 1 1 0 0 0 30 1 3310.4208 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 120 149 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 4 0.013541 16.202 By MS/MS By matching 1 1 0.61278 0.61478 20.197 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6243 0.70916 NaN 1 0 Median 0.60147 0.53296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3679200 2064400 1614900 0 0 0 0 0 0 3596400 2014100 1582300 82816 50271 32545 0 0 0 0 0 0 31748 20 33381 165936;165937 167014 167014 1 SSTISVHDPFSDVSDSSFPK ASTPHGQMTPMQGGRSSTISVHDPFSDVSD VHDPFSDVSDSSFPKRNSMTPNAPYQQGMS R S S P K R 0 0 0 3 0 0 0 0 1 1 0 1 0 2 2 7 1 0 0 2 0 0 20 0 2137.9804 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1 A0A3F2YNW7 1314 1333 ARID1B AT-rich interactive domain-containing protein 1B yes no 3 8.2644E-06 44.089 By MS/MS By matching 1 1 0.73437 0.73574 20.932 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56936 0.63452 NaN 1 0 Median 0.94722 0.85311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4111900 2516900 1595000 0 0 0 0 0 0 3941100 2447000 1494100 170800 69876 100920 0 0 0 0 0 0 31749 449 33382 165938;165939 167015;167016 167016 2 SSTPAQLAFMR VYLAIQSSQAGGELKSSTPAQLAFMRVYCG GELKSSTPAQLAFMRVYCGPSPSCLVQSSS K S S M R V 2 1 0 0 0 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 0 0 11 0 1207.6019 A6NEM2;P51610;H7C1C4 A6NEM2 1985 1995 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.00019205 107.66 By MS/MS By matching 3 1 0.69606 0.73682 47.82 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69014 0.70319 5.6108 3 0 Median 2.1625 1.8751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24396000 14731000 9665000 0 0 0 0 0 0 24231000 14652000 9579200 164650 78814 85832 0 0 0 0 0 0 31750 509;2438 33383 165940;165941;165942;165943 167017;167018;167019 167017 3 SSTPLHSPSPIR SSVQGASSREGSPARSSTPLHSPSPIRVHT PARSSTPLHSPSPIRVHTVVDRPQQPMTHR R S S I R V 0 1 0 0 0 0 0 0 1 1 1 0 0 0 3 4 1 0 0 0 0 0 12 0 1277.6728 O95817;C9JFK9 O95817 283 294 BAG3 BAG family molecular chaperone regulator 3 yes no 3 0.0081885 28.283 By MS/MS By matching By matching 1 2 1 0.51907 0.58155 47.249 4 Median NaN NaN NaN 0 0 Median 0.97303 0.857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51907 0.58155 48.108 2 0 Median 0.3825 0.33817 NaN 1 0 Median 10300000 6599600 3700400 0 0 0 1406800 733910 672920 0 0 0 0 0 0 5868100 3650600 2217500 3025000 2215000 810000 31751 1796 33384 165944;165945;165946;165947 167020 167020 1 SSTPLPTISSSAENTR EKKLLKLREQGTESRSSTPLPTISSSAENT STPLPTISSSAENTRQNGSNDSDRYSDNEE R S S T R Q 1 1 1 0 0 0 1 0 0 1 1 0 0 0 2 5 3 0 0 0 0 0 16 0 1646.8111 P42166;P42167;G5E972;H0YJH7 P42166 158 173 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 1.0061E-09 134.99 By MS/MS By MS/MS By MS/MS By MS/MS 8 8 5 4 0.81253 0.73952 21.881 25 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68734 0.67253 14.976 8 1 Median 1.1192 0.9492 17.9 8 1 Median 0.64096 0.64572 9.0919 5 0 Median 1.0346 0.86479 12.848 4 0 Median 548430000 311140000 237290000 0 0 0 0 0 0 297800000 172810000 124990000 87651000 42674000 44977000 134130000 80562000 53570000 28840000 15090000 13750000 31752 2306;2307 33385 165948;165949;165950;165951;165952;165953;165954;165955;165956;165957;165958;165959;165960;165961;165962;165963;165964;165965;165966;165967;165968;165969;165970;165971;165972 167021;167022;167023;167024;167025;167026;167027;167028;167029;167030;167031;167032;167033;167034;167035;167036;167037;167038;167039;167040;167041;167042;167043;167044;167045;167046;167047;167048;167049;167050;167051;167052;167053;167054;167055;167056;167057;167058;167059;167060;167061;167062;167063;167064;167065;167066;167067;167068;167069;167070;167071;167072;167073;167074;167075;167076;167077 167028 57 SSTPPGESYFGVSSLQLK VQSCPGSLSLCAGVKSSTPPGESYFGVSSL PPGESYFGVSSLQLKGQSQTSPDHRSDTSS K S S L K G 0 0 0 0 0 1 1 2 0 0 2 1 0 1 2 5 1 0 1 1 0 0 18 0 1882.9313 Q9UQ35 Q9UQ35 1041 1058 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 5.4946E-11 101.6 By MS/MS By matching 1 1 0.7677 0.72346 6.8855 2 Median 0.75806 0.75956 NaN 1 0 Median 0.77746 0.68908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12659000 6986700 5671900 12124000 6727600 5396200 534790 259070 275720 0 0 0 0 0 0 0 0 0 0 0 0 31753 4359 33386 165973;165974 167078;167079 167079 2 SSTPTTIFPIR MVCGGGPALTLWHLRSSTPTTIFPIRAPQK WHLRSSTPTTIFPIRAPQKHVTFYQDLILS R S S I R A 0 1 0 0 0 0 0 0 0 2 0 0 0 1 2 2 3 0 0 0 0 0 11 0 1218.6608 Q86W42 Q86W42 248 258 THOC6 THO complex subunit 6 homolog yes yes 2 0.00015996 81.594 By MS/MS By MS/MS By matching 2 2 1 0.88271 0.80257 12.522 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86309 0.82642 23.828 2 0 Median 0.919 0.7799 4.0528 2 0 Median 0.78553 0.83095 NaN 1 0 Median NaN NaN NaN 0 0 Median 32429000 17928000 14501000 0 0 0 0 0 0 23985000 13518000 10466000 4641400 2352600 2288800 3802900 2057100 1745800 0 0 0 31754 3290 33387 165975;165976;165977;165978;165979 167080;167081;167082;167083;167084 167081 5 SSTQMTWGALFR ESFLAFTTHPSQFLRSSTQMTWGALFRHEI FLRSSTQMTWGALFRHEILSRDPLLLAIIP R S S F R H 1 1 0 0 0 1 0 1 0 0 1 0 1 1 0 2 2 1 0 0 0 0 12 0 1383.6605 Q9HAV4;H0Y9I3 Q9HAV4 369 380 XPO5 Exportin-5 yes no 2 0.001303 54.608 By MS/MS By matching By MS/MS 1 1 1 1.2083 1.1731 2.226 3 Median 1.2083 1.1731 NaN 1 0 Median 1.3828 1.1822 NaN 1 0 Median 1.0507 1.1338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7131500 3018100 4113400 3421300 1422100 1999200 2653000 1062600 1590500 1057100 533410 523700 0 0 0 0 0 0 0 0 0 31755 4012 33388 165980;165981;165982 167085;167086;167087 167085 3 SSTSEGLLLK RPLNLGPFVVRAFLRSSTSEGLLLKIDPLL RAFLRSSTSEGLLLKIDPLLPKEVKNEESE R S S L K I 0 0 0 0 0 0 1 1 0 0 3 1 0 0 0 3 1 0 0 0 0 0 10 0 1033.5655 Q9BYD6 Q9BYD6 297 306 MRPL1 39S ribosomal protein L1, mitochondrial yes yes 2 0.0030923 57.96 By MS/MS By MS/MS By MS/MS 1 1 1 1.6428 1.3863 19.255 3 Median 1.1609 1.0982 NaN 1 0 Median 1.9163 1.6091 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6428 1.3863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11680000 4879700 6800600 5921700 2690700 3231000 3560000 1478800 2081200 0 0 0 2198600 710160 1488400 0 0 0 0 0 0 31756 3890 33389 165983;165984;165985 167088;167089;167090 167089 3 SSTTSMTSVPKPLK SLYRPALEELRRQIRSSTTSMTSVPKPLKF RSSTTSMTSVPKPLKFLRPHYGKLKEIYEN R S S L K F 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 4 3 0 0 1 0 0 14 1 1462.7701 Q13200;C9JPC0;H7C2Q3 Q13200 84 97 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2;3 0.00052153 47.844 By MS/MS By MS/MS 2 2 0.85446 0.8614 6.2965 4 Median 0.81772 0.85912 2.2813 2 0 Median 0.93728 0.90691 9.1887 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20430000 10692000 9737700 13306000 7007000 6298600 7124500 3685300 3439200 0 0 0 0 0 0 0 0 0 0 0 0 31757 2796 33390 165986;165987;165988;165989 167091;167092;167093;167094;167095;167096 167092 6 SSTVGLVTLNDMK KKFSAHYDAVEAELKSSTVGLVTLNDMKAK LKSSTVGLVTLNDMKAKQEALVKEREKQLA K S S M K A 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 2 2 0 0 2 0 0 13 0 1363.7017 Q14320;B0S8I6;Q9Y247 Q14320 62 74 FAM50A;FAM50B Protein FAM50A;Protein FAM50B no no 2 3.4791E-06 97.813 By MS/MS By MS/MS By MS/MS 1 2 1 1.1597 1.0393 110.19 4 Median 1.0453 0.9658 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39704 0.40999 166.33 2 1 Median 1.3185 1.1184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64282000 40324000 23958000 17096000 7164000 9932000 0 0 0 42791000 31183000 11608000 4394700 1977600 2417200 0 0 0 0 0 0 31758 2873;4373 33391;33392 165990;165991;165992;165993 167097;167098;167099;167100 167098 1569 4 SSVALAPALVETYSR IHSIATRVIKLAHAKSSVALAPALVETYSR SSVALAPALVETYSRLLVYMEIESLGIKGF K S S S R L 3 1 0 0 0 0 1 0 0 0 2 0 0 0 1 3 1 0 1 2 0 0 15 0 1562.8304 Q5JWT2;Q9ULK4 Q5JWT2 561 575 MED23 Mediator of RNA polymerase II transcription subunit 23 yes no 2 5.6904E-07 87.363 By MS/MS 1 0.8891 0.97536 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8891 0.97536 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2674200 1456300 1217900 0 0 0 0 0 0 2674200 1456300 1217900 0 0 0 0 0 0 0 0 0 31759 3059 33393 165994 167101 167101 1 SSVAVLTQESFAEHR ______________________________ SSVAVLTQESFAEHRSGLVPQQIKVATLNS M S S H R S 2 1 0 0 0 1 2 0 1 0 1 0 0 1 0 3 1 0 0 2 0 0 15 0 1659.8216 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JQ82;C9JMQ6;C9J739;C9JHS9 Q00341 2 16 HDLBP Vigilin yes no 2;3 8.5442E-14 174.84 By MS/MS By matching By MS/MS 3 2 1 1.1589 1.0706 17.789 6 Median 1.0683 1.0037 7.4925 3 1 Median 1.2973 1.1215 19.439 2 0 Median 1.3926 1.5313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88494000 41013000 47482000 72482000 34280000 38202000 3683300 1675100 2008200 12329000 5057900 7271200 0 0 0 0 0 0 0 0 0 31760 4 33394 165995;165996;165997;165998;165999;166000 167102;167103;167104;167105;167106;167107;167108;167109 167103 8 SSVETTPSVIQHVGQPPATPAK SPAPNANADGTKTSRSSVETTPSVIQHVGQ SVIQHVGQPPATPAKHSSSTSSKGAKASNP R S S A K H 2 0 0 0 0 2 1 1 1 1 0 1 0 0 4 3 3 0 0 3 0 0 22 0 2230.1594 Q6W2J9;H7BYY2 Q6W2J9 586 607 BCOR BCL-6 corepressor yes no 3 2.3811E-09 53.779 By MS/MS By matching 2 1 0.47483 0.50853 7.0499 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44644 0.4848 6.7595 2 0 Median 0.63128 0.53032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32307000 20693000 11614000 0 0 0 0 0 0 30887000 19915000 10972000 1419200 777270 641920 0 0 0 0 0 0 31761 3191 33395 166001;166002;166003 167110;167111 167110 2 SSVLENFVGR DLPQIAVVGGQSAGKSSVLENFVGRDFLPR QSAGKSSVLENFVGRDFLPRGSGIVTRRPL K S S G R D 0 1 1 0 0 0 1 1 0 0 1 0 0 1 0 2 0 0 0 2 0 0 10 0 1106.572 P50570;A0A1B0GUX5 P50570 45 54 DNM2 Dynamin-2 no no 2 0.00025118 127.56 By MS/MS By matching By MS/MS By matching By MS/MS 1 3 2 2 1 1.177 1.1418 68.601 9 Median 0.96819 0.93529 NaN 1 1 Median 0.53437 0.45987 102.48 3 0 Median 1.1254 1.1432 12.232 2 0 Median 1.3642 1.1515 1.2044 2 0 Median 1.5111 1.5947 NaN 1 1 Median NaN NaN NaN 0 0 Median 57865000 25461000 32404000 6664000 3531200 3132800 12620000 4601200 8018600 32079000 14766000 17313000 2714800 1084500 1630300 3787600 1477500 2310100 0 0 0 31762 2417 33396 166004;166005;166006;166007;166008;166009;166010;166011;166012 167112;167113;167114;167115 167114 4 SSVLESLVGR QLPQIVVVGTQSSGKSSVLESLVGRDLLPR QSSGKSSVLESLVGRDLLPRGTGIVTRRPL K S S G R D 0 1 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 0 2 0 0 10 0 1045.5768 O00429;F8VZ52;F8W1W3;B4DDQ3;B4DPZ9;F8VUJ9;H0YHY4;F8VR28;F8VYL3 O00429 39 48 DNM1L Dynamin-1-like protein yes no 2 0.00047826 90.709 By MS/MS By MS/MS By MS/MS 1 2 1 1.0238 0.97012 37.239 3 Median 1.0238 0.97012 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1024 1.1568 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.54706 0.56605 NaN 1 1 Median NaN NaN NaN 0 0 Median 18826000 11027000 7798700 7341600 3734000 3607500 0 0 0 4888500 2771900 2116600 0 0 0 6595600 4521200 2074500 0 0 0 31763 1463 33397 166013;166014;166015;166016 167116;167117;167118;167119;167120 167117 5 SSVLIAQQTDTSDPEK LAFPSPEKLLRLGPKSSVLIAQQTDTSDPE SVLIAQQTDTSDPEKVVSAFLKVSSVFKDE K S S E K V 1 0 0 2 0 2 1 0 0 1 1 1 0 0 1 3 2 0 0 1 0 0 16 0 1717.837 P46060 P46060 453 468 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 5.2981E-10 140.14 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.95044 0.85671 10.374 7 Median 0.95044 0.91903 NaN 1 0 Median 1.035 0.8992 11.266 2 0 Median 0.94648 0.92694 11.143 2 0 Median 0.90551 0.77604 1.2949 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84433000 43459000 40974000 3213200 1674000 1539200 6619700 3275500 3344300 59020000 30309000 28711000 15580000 8201000 7379100 0 0 0 0 0 0 31764 2336 33398 166017;166018;166019;166020;166021;166022;166023 167121;167122;167123;167124;167125;167126;167127;167128;167129;167130;167131;167132;167133;167134;167135;167136 167124 16 SSVLQVSVLQSTK KLVLYPSAQEKVLQRSSVLQVSVLQSTKDS QRSSVLQVSVLQSTKDSSKRICVANTHLYW R S S T K D 0 0 0 0 0 2 0 0 0 0 2 1 0 0 0 4 1 0 0 3 0 0 13 0 1374.7718 F6T1Q0;Q6L8Q7 F6T1Q0 432 444 PDE12 2,5-phosphodiesterase 12 yes no 2 0.0006254 80.706 By MS/MS 1 0.64611 0.60584 NaN 1 Median 0.64611 0.60584 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13206000 7330000 5876200 13206000 7330000 5876200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31765 1050 33399 166024 167137 167137 1 SSVLSTGNQLLR FLEFSKEVDAQSSLKSSVLSTGNQLLRLKK SLKSSVLSTGNQLLRLKKVDTATLRSELSR K S S L R L 0 1 1 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 1 0 0 12 0 1273.699 A0A0C4DG40;Q8NF91;E7ENN3 A0A0C4DG40 6786 6797 SYNE1 Nesprin-1 yes no 2 7.6486E-05 84.213 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31766 233 33400 166025 167138 167138 1 SSVLTQVNQLK LEDTASRIDELFQKRSSVLTQVNQLKTSMQ FQKRSSVLTQVNQLKTSMQSVLQEWKIYDQ R S S L K T 0 0 1 0 0 2 0 0 0 0 2 1 0 0 0 2 1 0 0 2 0 0 11 0 1215.6823 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3 Q8WXH0 5259 5269 SYNE2 Nesprin-2 yes no 2 0.00013952 101.72 By MS/MS By MS/MS By matching 1 1 1 0.89673 0.95768 9.6471 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89673 0.95768 NaN 1 0 Median 0.85322 0.82535 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1539 0.98893 NaN 1 0 Median 20242000 10999000 9242100 0 0 0 0 0 0 16133000 8703000 7429600 2729000 1641400 1087600 0 0 0 1379900 655080 724860 31767 3521 33401 166026;166027;166028 167139;167140;167141 167139 3 SSVNCPFSSQDMK RKILTTEGRNALIHKSSVNCPFSSQDMKYP HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR K S S M K Y 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 4 0 0 0 1 0 0 13 0 1485.6228 Q08211 Q08211 1025 1037 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00051913 71.555 By MS/MS By matching 1 1 0.97756 0.9139 18.956 2 Median NaN NaN NaN 0 0 Median 1.2347 1.045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77399 0.79926 NaN 1 0 Median NaN NaN NaN 0 0 Median 13354000 5745400 7608700 0 0 0 10832000 4404100 6427500 0 0 0 0 0 0 2522700 1341400 1181300 0 0 0 31768 2736 33402 166029;166030 167142;167143 167143 2 SSVPLYLIYPSVENVR ESMLTLGKESKTPGKSSVPLYLIYPSVENV SVPLYLIYPSVENVRTSLEGYPAGGSLPYS K S S V R T 0 1 1 0 0 0 1 0 0 1 2 0 0 0 2 3 0 0 2 3 0 0 16 0 1834.9829 G3V2F4;E7EPD8;Q9NUW8;H0YJ44 G3V2F4 433 448 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 3 0.057753 9.9222 By MS/MS 1 0.78821 0.81493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78821 0.81493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 838790 457900 380890 0 0 0 0 0 0 838790 457900 380890 0 0 0 0 0 0 0 0 0 31769 869 33403 166031 167144 167144 1 SSVTHLLCASK MAVTLTVPVVIFPIRSSVTHLLCASKDFSW FPIRSSVTHLLCASKDFSWWRHSLITVSIL R S S S K D 1 0 0 0 1 0 0 0 1 0 2 1 0 0 0 3 1 0 0 1 0 0 11 0 1201.6125 Q96QD8;F8VQW8 Q96QD8 396 406 SLC38A2 Sodium-coupled neutral amino acid transporter 2 yes no 2 3.0443E-07 168.46 By MS/MS 3 1.1997 1.0491 32.52 3 Median NaN NaN NaN 0 0 Median 1.1997 1.0491 32.52 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16820000 9124400 7695400 0 0 0 16820000 9124400 7695400 0 0 0 0 0 0 0 0 0 0 0 0 31770 3719 33404 166032;166033;166034 167145;167146;167147;167148 167146 4 SSVTSAAAVSALAGVQDQLIEK RRNRKFKEAERLFSKSSVTSAAAVSALAGV AVSALAGVQDQLIEKREPGSGTESDTSPDF K S S E K R 5 0 0 1 0 2 1 1 0 1 2 1 0 0 0 4 1 0 0 3 0 0 22 0 2144.1325 Q9HAF1;B1AK63 Q9HAF1 92 113 MEAF6 Chromatin modification-related protein MEAF6 yes no 3 0.028701 12.929 By matching By MS/MS 1 1 0.96292 0.89294 21.561 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0162 1.04 NaN 1 0 Median 0.9124 0.76667 NaN 1 0 Median 4933700 2311800 2621900 0 0 0 0 0 0 0 0 0 0 0 0 2691100 1352700 1338400 2242600 959130 1283500 31771 4008 33405 166035;166036 167149 167149 1 SSVTSAAAVSALAGVQDQLIEKR RRNRKFKEAERLFSKSSVTSAAAVSALAGV VSALAGVQDQLIEKREPGSGTESDTSPDFH K S S K R E 5 1 0 1 0 2 1 1 0 1 2 1 0 0 0 4 1 0 0 3 0 0 23 1 2300.2336 Q9HAF1;B1AK63 Q9HAF1 92 114 MEAF6 Chromatin modification-related protein MEAF6 yes no 3 8.5732E-08 43.799 By MS/MS 1 0.88988 0.94002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88988 0.94002 NaN 1 0 Median NaN NaN NaN 0 0 Median 2968700 1569900 1398800 0 0 0 0 0 0 0 0 0 0 0 0 2968700 1569900 1398800 0 0 0 31772 4008 33406 166037 167150 167150 1 SSWYWGR ______________________________ GNFDSEERSSWYWGRLSRQEAVALLQGQRH R S S G R L 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 2 1 0 0 0 7 0 940.41915 P46108;I3L297 P46108 11 17 CRK Adapter molecule crk yes no 2 0.053104 38.818 By MS/MS By matching 2 1 1.1061 1.065 5.8709 3 Plateau 1.0951 1.0441 3.0869 2 0 Median 1.1157 0.95007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4905300 2275900 2629400 4115300 1872200 2243100 790040 403690 386350 0 0 0 0 0 0 0 0 0 0 0 0 31773 2340 33407 166038;166039;166040 167151 167151 1 SSYDVFQLEFNDGAYNIK FIGCRKVTGTLDANRSSYDVFQLEFNDGAY DVFQLEFNDGAYNIKDSTGKYWTVGSDSAV R S S I K D 1 0 2 2 0 1 1 1 0 1 1 1 0 2 0 2 0 0 2 1 0 0 18 0 2108.9691 Q16658 Q16658 409 426 FSCN1 Fascin yes yes 2 0.00013593 46.592 By matching By matching By MS/MS By matching 1 1 1 1 1.0235 0.94583 8.3918 4 Median 0.86521 0.83867 NaN 1 0 Median 1.1227 0.96197 NaN 1 0 Median 0.93307 0.92997 NaN 1 0 Median 1.1663 1.0252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9551100 5115900 4435200 916660 451480 465180 2479800 1201200 1278600 5987300 3374200 2613100 167260 88970 78294 0 0 0 0 0 0 31774 2993 33408 166041;166042;166043;166044 167152;167153 167153 2 SSYIVSQIAVAYHNIR ALQKYQNLIDVGFSKSSYIVSQIAVAYHNI SYIVSQIAVAYHNIRDIDKALSIFNELRKQ K S S I R D 2 1 1 0 0 1 0 0 1 3 0 0 0 0 0 3 0 0 2 2 0 0 16 0 1819.9581 Q9UJX2 Q9UJX2 262 277 CDC23 Cell division cycle protein 23 homolog yes yes 3 0.0021025 29.733 By MS/MS 1 0.90213 0.92493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90213 0.92493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5835000 2864400 2970600 0 0 0 0 0 0 5835000 2864400 2970600 0 0 0 0 0 0 0 0 0 31775 4300 33409 166045 167154 167154 1 SSYLEYQK EEEITPTIQKLKEERSSYLEYQKVMREIEH QKLKEERSSYLEYQKVMREIEHLSRLYIAY R S S Q K V 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 0 8 0 1016.4815 O95347;Q5T821 O95347 215 222 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.0055403 75.189 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1664 1.0803 23.187 4 Median 1.1862 1.1941 NaN 1 0 Median 1.1074 0.93949 NaN 1 0 Median 1.442 1.5592 NaN 1 0 Median 1.147 0.97731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13794000 6294300 7499400 1512600 618660 893910 7235700 3271300 3964400 2702100 1219200 1482900 2343300 1185100 1158200 0 0 0 0 0 0 31776 1766 33410 166046;166047;166048;166049 167155;167156 167156 2 SSYYVVSGNDPAAEEPSR SNSKNVDVEFFKRVRSSYYVVSGNDPAAEE YVVSGNDPAAEEPSRAVLDALLEGKAQWGS R S S S R A 2 1 1 1 0 0 2 1 0 0 0 0 0 0 2 4 0 0 2 2 0 0 18 0 1926.8595 P46821 P46821 2382 2399 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 4.7598E-15 160.38 By matching By MS/MS By MS/MS 1 2 2 0.91611 0.76827 19.873 5 Median 1.098 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65916 0.65527 5.0104 2 0 Median 0.93881 0.78524 3.0912 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23475000 12348000 11126000 2414100 881070 1533000 0 0 0 11464000 6652100 4811700 9596800 4815200 4781600 0 0 0 0 0 0 31777 2347 33411 166050;166051;166052;166053;166054 167157;167158;167159;167160;167161;167162 167158 6 STAFQLVELGPGR LLGIWFISEWMATGKSTAFQLVELGPGRGT GKSTAFQLVELGPGRGTLVGDILRVFTQLG K S T G R G 1 1 0 0 0 1 1 2 0 0 2 0 0 1 1 1 1 0 0 1 0 0 13 0 1373.7303 C9JS27;Q7L592;C9J236;C9JP36;C9JEL7 C9JS27 73 85 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 2 7.918E-07 112.36 By matching By MS/MS 1 1 0.37004 0.3836 40.918 2 Median 0.51699 0.51231 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.26486 0.28723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11988000 8381700 3606100 5856900 3567000 2289900 0 0 0 6130800 4814700 1316100 0 0 0 0 0 0 0 0 0 31778 721 33412 166055;166056 167163 167163 1 STAGDTHLGGEDFDNR DVSILTIEDGIFEVKSTAGDTHLGGEDFDN TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK K S T N R M 1 1 1 3 0 0 1 3 1 0 1 0 0 1 0 1 2 0 0 0 0 0 16 0 1690.7183 P11142;E9PKE3;E9PN89;P54652 P11142 221 236 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2;3 2.0315E-72 245.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 10 7 10 7 9 1.147 1.0054 17.505 53 Median 1.1626 1.0977 19.323 10 0 Median 1.1539 0.99314 13.721 10 0 Median 1.0753 1.0811 11.735 7 0 Median 1.1658 0.98496 28.148 10 0 Median 0.98051 0.97741 11.775 7 0 Median 1.1788 0.96349 5.7867 9 1 Median 2591300000 1185600000 1405700000 1055800000 470970000 584820000 552260000 254930000 297330000 413620000 196300000 217320000 305030000 138300000 166730000 218670000 104500000 114170000 45943000 20610000 25333000 31779 1950;2483 33413 166057;166058;166059;166060;166061;166062;166063;166064;166065;166066;166067;166068;166069;166070;166071;166072;166073;166074;166075;166076;166077;166078;166079;166080;166081;166082;166083;166084;166085;166086;166087;166088;166089;166090;166091;166092;166093;166094;166095;166096;166097;166098;166099;166100;166101;166102;166103;166104;166105;166106;166107;166108;166109 167164;167165;167166;167167;167168;167169;167170;167171;167172;167173;167174;167175;167176;167177;167178;167179;167180;167181;167182;167183;167184;167185;167186;167187;167188;167189;167190;167191;167192;167193;167194;167195;167196;167197;167198;167199;167200;167201;167202;167203;167204;167205;167206;167207;167208;167209;167210;167211;167212;167213;167214;167215;167216;167217;167218;167219;167220;167221;167222;167223;167224;167225;167226;167227;167228;167229;167230;167231;167232;167233;167234 167207 70 STAGNFLVNPLEPK EQEQEHNGPLDNKGKSTAGNFLVNPLEPKN KSTAGNFLVNPLEPKNAEKLKVKIADLGNA K S T P K N 1 0 2 0 0 0 1 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1485.7827 H3BLV9;Q96SB4 H3BLV9 489 502 SRPK1 SRSF protein kinase 1 yes no 2 0.0021246 44.765 By MS/MS By MS/MS By matching 1 2 2 0.77245 0.75281 27.099 5 Median 0.78022 0.75281 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59671 0.60991 41.414 2 0 Median 0.74161 0.62075 29.897 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13010000 7813700 5196800 3326000 2024800 1301300 0 0 0 9143000 5461000 3682100 541410 327930 213480 0 0 0 0 0 0 31780 1207 33414 166110;166111;166112;166113;166114 167235;167236;167237;167238 167235 4 STANVLEETTVK EKMKSEEQPMDLENRSTANVLEETTVKKEK ENRSTANVLEETTVKKEKEDEKELVKLPVI R S T V K K 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1290.6667 Q96T23;H0YER1;H0YCN2 Q96T23 266 277 RSF1 Remodeling and spacing factor 1 yes no 2 0.0010743 86.014 By MS/MS 1 1.0672 1.1168 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0672 1.1168 NaN 1 1 Median NaN NaN NaN 0 0 Median 8285100 3483800 4801200 0 0 0 0 0 0 0 0 0 0 0 0 8285100 3483800 4801200 0 0 0 31781 3740 33415 166115 167239 167239 1 STANVLEETTVKK EKMKSEEQPMDLENRSTANVLEETTVKKEK NRSTANVLEETTVKKEKEDEKELVKLPVIV R S T K K E 1 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 3 0 0 2 0 0 13 1 1418.7617 Q96T23;H0YER1;H0YCN2 Q96T23 266 278 RSF1 Remodeling and spacing factor 1 yes no 2;3 2.0607E-07 134.75 By MS/MS By MS/MS 6 6 1.101 1.0513 14.127 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96107 1.0416 19.253 6 0 Median 1.186 1.0635 8.0858 6 0 Median 83170000 42602000 40568000 0 0 0 0 0 0 0 0 0 0 0 0 60980000 32082000 28898000 22190000 10520000 11670000 31782 3740 33416 166116;166117;166118;166119;166120;166121;166122;166123;166124;166125;166126;166127 167240;167241;167242;167243;167244;167245;167246;167247;167248;167249;167250;167251;167252 167246 12 STAPAVAYDSK PATTQNYQDSYSYVRSTAPAVAYDSKQYYQ SYVRSTAPAVAYDSKQYYQQPTATAAAVAA R S T S K Q 3 0 0 1 0 0 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 11 0 1108.5401 Q96KR1 Q96KR1 148 158 ZFR Zinc finger RNA-binding protein yes yes 2 0.0017421 59.426 By MS/MS By MS/MS By matching 1 2 1 0.68226 0.64935 56.325 4 Median NaN NaN NaN 0 0 Median 0.88492 0.77851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49509 0.51459 7.2389 2 1 Median 1.8567 1.6939 NaN 1 0 Median 8364700 5608600 2756100 0 0 0 1981300 921140 1060200 0 0 0 0 0 0 6186000 4596300 1589700 197410 91186 106230 31783 3697 33417 166128;166129;166130;166131 167253;167254;167255;167256 167256 4 STAPIAKPLATR TLQFTLRWTGETNDKSTAPIAKPLATRNSE NDKSTAPIAKPLATRNSESLHQENKPGSVK K S T T R N 3 1 0 0 0 0 0 0 0 1 1 1 0 0 2 1 2 0 0 0 0 0 12 1 1224.719 J3QQW9;Q15022 J3QQW9 346 357 SUZ12 Polycomb protein SUZ12 yes no 3 0.034354 21.06 By MS/MS 2 0.74059 0.91182 15.43 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74059 0.91182 15.43 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1144900 553530 591410 0 0 0 0 0 0 1144900 553530 591410 0 0 0 0 0 0 0 0 0 31784 1344 33418 166132;166133 167257 167257 1 STAPLLDVFSSMLK DSEEQQESARAVPEKSTAPLLDVFSSMLKD KSTAPLLDVFSSMLKDTTSQHRAHLFDLNC K S T L K D 1 0 0 1 0 0 0 0 0 0 3 1 1 1 1 3 1 0 0 1 0 0 14 0 1507.7956 Q9BTC0 Q9BTC0 825 838 DIDO1 Death-inducer obliterator 1 yes yes 2 0.00023138 76.655 By matching By matching By MS/MS 3 1 5 0.82425 0.87791 23.21 9 Median 1.2007 1.1395 3.2202 3 0 Plateau 1.301 1.1807 NaN 1 0 Median 0.78217 0.85423 16.877 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15142000 8363400 6778800 1370700 642740 727910 70344 29091 41253 13701000 7691600 6009600 0 0 0 0 0 0 0 0 0 31785 3824 33419 166134;166135;166136;166137;166138;166139;166140;166141;166142 167258;167259 167259 2 STAQQELDGKPASPTPVIVASHTANKEEK ERNVMEEGKDFQPSRSTAQQELDGKPASPT TPVIVASHTANKEEKSLLELEVDLDNLELE R S T E K S 4 0 1 1 0 2 3 1 1 1 1 3 0 0 3 3 3 0 0 2 0 0 29 2 3032.5415 P35606;H0YAC7 P35606 847 875 COPB2 Coatomer subunit beta yes no 4;5 1.3386E-14 60.527 By MS/MS By MS/MS 2 1 0.60482 0.71443 15.271 3 Median 0.63465 0.74966 6.809 2 0 Median 0.5599 0.58325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33439000 19033000 14406000 22404000 12703000 9701000 11035000 6329800 4705100 0 0 0 0 0 0 0 0 0 0 0 0 31786 2246 33420 166143;166144;166145 167260;167261;167262;167263 167263 4 STATTVAPAGIPATPGPVNPPPPEVSNPSKPGR ______________________________ NPPPPEVSNPSKPGRKTNQLQYMQNVVVKT M S T G R K 4 1 2 0 0 0 1 3 0 1 0 1 0 0 10 3 4 0 0 3 0 0 33 1 3160.6517 Q15059;A9J571 Q15059 2 34 BRD3 Bromodomain-containing protein 3 yes no 3 1.0067E-13 65.69 By MS/MS 1 0.17673 0.2001 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17673 0.2001 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20404000 18233000 2170600 0 0 0 0 0 0 20404000 18233000 2170600 0 0 0 0 0 0 0 0 0 31787 2923 33421 166146 167264 167264 1 STATTVAPAGIPATPGPVNPPPPEVSNPSKPGRK ______________________________ PPPPEVSNPSKPGRKTNQLQYMQNVVVKTL M S T R K T 4 1 2 0 0 0 1 3 0 1 0 2 0 0 10 3 4 0 0 3 0 0 34 2 3288.7466 Q15059;A9J571 Q15059 2 35 BRD3 Bromodomain-containing protein 3 yes no 3 1.0596E-38 101.37 By MS/MS 1 0.13356 0.16639 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.13356 0.16639 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14578000 13313000 1264600 0 0 0 0 0 0 14578000 13313000 1264600 0 0 0 0 0 0 0 0 0 31788 2923 33422 166147 167265 167265 1 STAYEDYYYHPPPR DKKRKERQAARQASRSTAYEDYYYHPPPRM RSTAYEDYYYHPPPRMPPPIRGRGRGGGRG R S T P R M 1 1 0 1 0 0 1 0 1 0 0 0 0 0 3 1 1 0 4 0 0 0 14 0 1757.7686 O43390;B4DT28;A0A286YEZ8 O43390 428 441 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 6.8452E-12 180.36 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 7 7 11 7 0.7446 0.64566 20.768 38 Median 0.93872 0.90794 21.636 2 0 Median 0.87842 0.76082 25.174 4 0 Median 0.57614 0.6267 27.365 7 0 Median 0.76391 0.65359 12.539 7 0 Median 0.601 0.60743 19.211 11 1 Median 0.79693 0.64844 6.5395 7 0 Median 1139100000 685490000 453620000 9894600 5406000 4488700 10154000 5376700 4777300 491080000 305870000 185210000 42348000 23040000 19307000 515300000 306660000 208640000 70331000 39131000 31200000 31789 1568 33423 166148;166149;166150;166151;166152;166153;166154;166155;166156;166157;166158;166159;166160;166161;166162;166163;166164;166165;166166;166167;166168;166169;166170;166171;166172;166173;166174;166175;166176;166177;166178;166179;166180;166181;166182;166183;166184;166185 167266;167267;167268;167269;167270;167271;167272;167273;167274;167275;167276;167277;167278;167279;167280;167281;167282;167283;167284;167285;167286;167287;167288;167289;167290;167291;167292;167293;167294;167295;167296;167297;167298;167299;167300;167301;167302;167303;167304;167305;167306;167307;167308;167309;167310;167311;167312;167313;167314;167315;167316;167317;167318;167319;167320;167321;167322 167287 57 STCIYGGAPK VQQVAAEYCRACRLKSTCIYGGAPKGPQIR ACRLKSTCIYGGAPKGPQIRDLERGVEICI K S T P K G 1 0 0 0 1 0 0 2 0 1 0 1 0 0 1 1 1 0 1 0 0 0 10 0 1052.4961 A0A1X7SBZ2;A0A1W2PQ51;Q92841;J3KTA4;P17844;J3KRZ1;J3QRQ7 J3KTA4 198 207 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.0015788 64.265 By MS/MS By matching 2 1 1.1438 1.0928 24.221 3 Plateau NaN NaN NaN 0 0 Median 1.0701 0.94012 33.885 2 0 Median 0.93974 0.99963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7452800 3271400 4181400 0 0 0 3992900 1691100 2301800 3459900 1580300 1879600 0 0 0 0 0 0 0 0 0 31790 1334;343 33424 166186;166187;166188 167323;167324 167324 2 STDFAPIKEDFGQEK EMTSTSLYQDKQEGKSTDFAPIKEDFGQEK STDFAPIKEDFGQEKKTDDVEAMSSQPALA K S T E K K 1 0 0 2 0 1 2 1 0 1 0 2 0 2 1 1 1 0 0 0 0 0 15 1 1710.8101 P46821 P46821 1462 1476 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 5.4444E-07 130.1 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 0.91455 1.0363 8.7601 8 Median 0.98115 1.0687 11.925 2 0 Median NaN NaN NaN 0 0 Median 0.90928 1.0285 6.3554 3 1 Median 1.0783 1.0955 4.049 2 0 Median 0.85692 0.90488 NaN 1 0 Median NaN NaN NaN 0 0 Median 91355000 43315000 48041000 28463000 13251000 15213000 0 0 0 56215000 26939000 29276000 4733100 2162900 2570200 1944200 962380 981850 0 0 0 31791 2347 33425 166189;166190;166191;166192;166193;166194;166195;166196 167325;167326;167327;167328;167329;167330;167331;167332;167333;167334;167335 167328 11 STDQTVLEELASIK LVHHGYCATAEAFARSTDQTVLEELASIKN RSTDQTVLEELASIKNRQRIQKLVLAGRMG R S T I K N 1 0 0 1 0 1 2 0 0 1 2 1 0 0 0 2 2 0 0 1 0 0 14 0 1532.7934 Q96S59 Q96S59 392 405 RANBP9 Ran-binding protein 9 yes yes 2 0.0004152 70.942 By matching By MS/MS By matching 1 2 1 1.1167 1.0458 11.773 4 Median 1.0929 1.0948 NaN 1 0 Median 1.0922 0.95908 5.7698 2 0 Median 1.1507 1.2099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5486000 2341800 3144200 1429500 629080 800410 3721000 1559300 2161700 335460 153410 182050 0 0 0 0 0 0 0 0 0 31792 3731 33426 166197;166198;166199;166200 167336 167336 1 STDTGVSLPSYEEDQGSK ______________________________ TGVSLPSYEEDQGSKLIRKAKEAPFVPVGI M S T S K L 0 0 0 2 0 1 2 2 0 0 1 1 0 0 1 4 2 0 1 1 0 0 18 0 1898.8381 Q9Y241;C9JAW5;C9JNU6 Q9Y241 2 19 HIGD1A HIG1 domain family member 1A, mitochondrial yes no 2 1.7234E-13 143.42 By MS/MS By matching By MS/MS By matching By matching 3 1 1 1 1 1.1918 1.1949 11.812 7 Median 1.1918 1.1158 5.1762 3 0 Median 1.1422 1.0086 NaN 1 0 Median 1.4179 1.3742 NaN 1 0 Median 1.6437 1.3677 NaN 1 0 Median 1.1684 1.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 27299000 12714000 14585000 19855000 9961500 9893100 697890 272450 425440 4648600 1580800 3067900 301490 95136 206360 1796300 804190 992120 0 0 0 31793 4371 33427 166201;166202;166203;166204;166205;166206;166207 167337;167338;167339;167340 167340 4 STDWSSQYSMVAGAGR ______________________________ TDWSSQYSMVAGAGRENGMETPMHENPEWE R S T G R E 2 1 0 1 0 1 0 2 0 0 0 0 1 0 0 4 1 1 1 1 0 0 16 0 1701.7417 C9JMY0;A0A087WUE4;Q96PV6;E7EWC7;B0VJY8;A0A0G2JPW6 C9JMY0 10 25 LENG8 Leukocyte receptor cluster member 8 yes no 2 0.0034488 48.004 By MS/MS 1 0.74308 0.79682 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74308 0.79682 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3641600 2049700 1591800 0 0 0 0 0 0 3641600 2049700 1591800 0 0 0 0 0 0 0 0 0 31794 30 33428 166208 167341 167341 1 STDYGIFQINSR SGYNTRATNYNAGDRSTDYGIFQINSRYWC GDRSTDYGIFQINSRYWCNDGKTPGAVNAC R S T S R Y 0 1 1 1 0 1 0 1 0 2 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1399.6732 F8VV32;A0A0B4J259;P61626 F8VV32 69 80 LYZ Lysozyme;Lysozyme C yes no 2 2.1675E-06 116.23 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 4 0.10709 0.10486 100.59 7 Median 0.026915 0.0263 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.12626 0.13764 NaN 1 1 Median 0.075259 0.065391 NaN 1 1 Median 0.12699 0.12923 103.92 4 4 Median NaN NaN NaN 0 0 Median 16833000 14903000 1929800 2169000 2141300 27679 0 0 0 6581100 6230700 350370 556890 508270 48618 7526000 6022900 1503100 0 0 0 31795 215 33429 166209;166210;166211;166212;166213;166214;166215;166216 167342;167343;167344;167345;167346;167347;167348;167349 167343 8 STELDSNWNWFQLR SGVHRSLGVHLSFIRSTELDSNWNWFQLRC RSTELDSNWNWFQLRCMQVGGNANALGAKK R S T L R C 0 1 2 1 0 1 1 0 0 0 2 0 0 1 0 2 1 2 0 0 0 0 14 0 1794.8325 E9PQP3;A0A0D9SF70;G5E9L0;Q8N6H7;E9PIY6;E9PMR9;E9PM63;H0YF45;H0YDX1;E9PJT7;E9PK28;E9PN48 E9PQP3 65 78 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 2 0.0082641 35.414 By MS/MS By matching 2 1 1.2303 1.1383 29.566 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93425 0.97871 39.952 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2872 1.1383 NaN 1 0 Median 2158300 981350 1177000 0 0 0 0 0 0 2090300 953210 1137100 0 0 0 0 0 0 68022 28140 39883 31796 266 33430 166217;166218;166219 167350 167350 1 STELLIR RPGTVALREIRRYQKSTELLIRKLPFQRLV REIRRYQKSTELLIRKLPFQRLVREIAQDF K S T I R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 7 0 830.48617 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 58 64 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2 1.2962E-09 172.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 8 9 7 1.3938 1.1698 24.497 33 Median 1.1955 1.1388 27.734 4 1 Median 1.5254 1.2635 21.987 3 0 Median 1.0869 1.1046 15.581 4 2 Median 2.017 1.7189 18.349 6 2 Median 1.0061 1.0212 3.695 9 0 Median 1.5524 1.248 8.5793 7 0 Median 8348500000 3575700000 4772900000 47098000 21581000 25517000 45100000 16223000 28877000 85450000 41947000 43503000 39011000 12744000 26266000 2996000000 1473300000 1522700000 5135900000 2009900000 3126000000 31797 1366;3104 33431 166220;166221;166222;166223;166224;166225;166226;166227;166228;166229;166230;166231;166232;166233;166234;166235;166236;166237;166238;166239;166240;166241;166242;166243;166244;166245;166246;166247;166248;166249;166250;166251;166252;166253;166254 167351;167352;167353;167354;167355;167356;167357;167358;167359;167360;167361;167362;167363;167364;167365;167366;167367;167368;167369;167370;167371;167372;167373;167374;167375;167376;167377;167378;167379;167380;167381;167382;167383;167384;167385;167386;167387;167388;167389;167390;167391;167392;167393;167394;167395;167396;167397;167398;167399;167400;167401;167402;167403;167404;167405;167406;167407;167408;167409;167410;167411;167412;167413;167414;167415;167416;167417;167418;167419;167420;167421;167422;167423;167424;167425;167426;167427;167428;167429;167430;167431;167432;167433 167419 83 STELLIRK RPGTVALREIRRYQKSTELLIRKLPFQRLV EIRRYQKSTELLIRKLPFQRLVREIAQDFK K S T R K L 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 1 958.58113 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 58 65 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2 0.00075511 97.033 By matching By matching By matching By MS/MS 1 1 1 5 0.84749 0.91242 29.394 8 Median 0.43254 0.42414 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55719 0.6885 NaN 1 0 Median 0.9092 0.73938 NaN 1 0 Median 0.85108 0.9549 5.4703 5 1 Median NaN NaN NaN 0 0 Median 35436000 18623000 16813000 762440 518740 243700 0 0 0 5393000 3378100 2014900 187170 98334 88836 29094000 14628000 14466000 0 0 0 31798 1366;3104 33432 166255;166256;166257;166258;166259;166260;166261;166262 167434;167435;167436;167437;167438 167434 5 STELLIRKLPFQR RPGTVALREIRRYQKSTELLIRKLPFQRLV QKSTELLIRKLPFQRLVREIAQDFKTDLRF K S T Q R L 0 2 0 0 0 1 1 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 2 1599.9461 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 58 70 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 3;4 1.5218E-05 89.189 By MS/MS By matching 3 1 0.80988 0.92117 12.596 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74165 0.88934 15.081 3 0 Median 1.0957 0.95414 NaN 1 0 Median 21967000 12056000 9911300 0 0 0 0 0 0 0 0 0 0 0 0 16465000 9224400 7240200 5502500 2831300 2671200 31799 1366;3104 33433 166263;166264;166265;166266 167439;167440;167441;167442 167440 4 STEPELIQVK GAGLLQNYVDRTESRSTEPELIQVKSELPL RTESRSTEPELIQVKSELPLDPLPVPTEEG R S T V K S 0 0 0 0 0 1 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1142.6183 Q15758;M0QXM4 Q15758 493 502 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 0.001352 80.438 By matching By MS/MS 2 4 0.74421 0.70788 10.092 5 Median 0.77857 0.75089 2.2717 2 0 Median 0.72118 0.62763 8.0899 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29458000 15361000 14097000 17045000 8392000 8652600 12414000 6969300 5444300 0 0 0 0 0 0 0 0 0 0 0 0 31800 2968 33434 166267;166268;166269;166270;166271;166272 167443;167444;167445;167446 167443 4 STEQQQAAPEPDPSTMTPQEQQQYWYR TTVQQEPLESGAKNKSTEQQQAAPEPDPST PSTMTPQEQQQYWYRQHLLSLQQRTKVHLP K S T Y R Q 2 1 0 1 0 7 3 0 0 0 0 0 1 0 4 2 3 1 2 0 0 0 27 0 3223.4153 P49750;F8VU51 P49750 273 299 YLPM1 YLP motif-containing protein 1 yes no 3 7.7492E-11 60.943 By MS/MS By matching By MS/MS 2 1 1 0.63672 0.62411 17.453 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63815 0.70527 1.65 2 2 Median 0.64171 0.55877 NaN 1 0 Median 0.47439 0.49782 NaN 1 0 Median NaN NaN NaN 0 0 Median 12585000 8094900 4489700 0 0 0 0 0 0 8380500 5245700 3134700 197850 120220 77622 4006300 2728900 1277300 0 0 0 31801 2395 33435 166273;166274;166275;166276 167447;167448;167449 167447 3 STESLQANVQR ARTIGISVDPRRRNKSTESLQANVQRLKEY RRNKSTESLQANVQRLKEYRSKLILFPRKP K S T Q R L 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1231.6157 P26373;J3QSB4 P26373 106 116 RPL13 60S ribosomal protein L13 yes no 2 1.862E-32 217.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 3 4 1.2048 1.0615 28.458 18 Median 1.108 1.0577 18.914 4 0 Median 1.1341 0.95138 38.21 4 1 Median 1.0226 0.9823 NaN 1 0 Median 1.7538 1.4185 43.592 2 0 Median 1.192 1.2042 19.761 3 0 Median 1.3612 1.0818 5.4888 4 0 Median 252480000 117220000 135260000 88697000 41248000 47449000 65206000 31925000 33282000 15999000 7913500 8085700 3343200 1287300 2055900 38068000 17674000 20394000 41165000 17176000 23989000 31802 2144 33436 166277;166278;166279;166280;166281;166282;166283;166284;166285;166286;166287;166288;166289;166290;166291;166292;166293;166294;166295 167450;167451;167452;167453;167454;167455;167456;167457;167458;167459;167460;167461;167462;167463;167464;167465;167466;167467;167468;167469;167470;167471;167472;167473;167474;167475;167476;167477;167478;167479;167480;167481;167482;167483 167472 34 STETALYR HAELSKLVKKHAAQRSTETALYRKMLGNPS KKHAAQRSTETALYRKMLGNPSRLPAKCPG R S T Y R K 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 2 0 1 0 0 0 8 0 939.46616 Q14318;A0A0A0MTJ1;U3KQ64 Q14318 358 365 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 0.013503 72.138 By MS/MS 1 0.4288 0.36221 NaN 1 Median NaN NaN NaN 0 0 Median 0.4288 0.36221 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6556500 5335300 1221300 0 0 0 6556500 5335300 1221300 0 0 0 0 0 0 0 0 0 0 0 0 31803 2872 33437 166296 167484 167484 1 STFETEHAGQR YGERITLRPDPLPERSTFETEHAGQRDRYD LPERSTFETEHAGQRDRYDRERDREPYFDR R S T Q R D 1 1 0 0 0 1 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 11 0 1261.5687 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1673 1683 YLPM1 YLP motif-containing protein 1 yes no 3 0.046407 16.533 By matching By MS/MS 1 2 0.94843 1.0356 5.4827 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92821 1.0356 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99852 1.0352 7.7537 2 0 Median NaN NaN NaN 0 0 Median 1293600 654520 639030 0 0 0 0 0 0 305970 157880 148090 0 0 0 987580 496640 490940 0 0 0 31804 2395 33438 166297;166298;166299 167485 167485 1 STFREESPLR DYSPPLHKNLDAREKSTFREESPLRIKMIA DAREKSTFREESPLRIKMIASDSHRPEVKL K S T L R I 0 2 0 0 0 0 2 0 0 0 1 0 0 1 1 2 1 0 0 0 0 0 10 1 1220.6149 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 525 534 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 0.0039887 41.283 By MS/MS By MS/MS 2 1 0.83893 0.85406 24.608 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66968 0.72603 32.176 2 0 Median 0.94477 0.85406 NaN 1 0 Median 5458000 2775300 2682700 0 0 0 0 0 0 0 0 0 0 0 0 4306200 2196400 2109800 1151800 578920 572920 31805 4175 33439 166300;166301;166302 167486;167487;167488 167488 3 STFSFSMTKPSEK SFGNSEQTKDENSSKSTFSFSMTKPSEKES SKSTFSFSMTKPSEKESEQPAKATFAFGAQ K S T E K E 0 0 0 0 0 0 1 0 0 0 0 2 1 2 1 4 2 0 0 0 0 0 13 1 1475.6966 P49790 P49790 1149 1161 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.0066644 30.483 By MS/MS By matching 1 1 1.0221 1.0609 17.696 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81054 0.9361 NaN 1 0 Median 1.2888 1.2023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6670000 3270300 3399700 0 0 0 0 0 0 5849300 2868400 2980900 820680 401890 418790 0 0 0 0 0 0 31806 2400 33440 166303;166304 167489 167489 1 STFSFSMTKPSEKESEQPAK SFGNSEQTKDENSSKSTFSFSMTKPSEKES SMTKPSEKESEQPAKATFAFGAQTSTTADQ K S T A K A 1 0 0 0 0 1 3 0 0 0 0 3 1 2 2 5 2 0 0 0 0 0 20 2 2245.0573 P49790 P49790 1149 1168 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.027894 14.46 By MS/MS 1 0.6533 0.7569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6533 0.7569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5963100 2333000 3630100 0 0 0 0 0 0 5963100 2333000 3630100 0 0 0 0 0 0 0 0 0 31807 2400 33441 166305 167490 167490 1 STFSPAPRPEMPGTVEVESTFLAR LASEFFEEEKQESPKSTFSPAPRPEMPGTV EMPGTVEVESTFLARLNFIWKGFINMPSVA K S T A R L 2 2 0 0 0 0 3 1 0 0 1 0 1 2 4 3 3 0 0 2 0 0 24 1 2605.2846 Q92576;E7ER40;E7EVH3 Q92576 1181 1204 PHF3 PHD finger protein 3 yes no 3 2.3452E-12 60.036 By MS/MS By matching 1 1 0.53226 0.56928 12.488 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41256 0.52117 NaN 1 0 Median 0.68668 0.62183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5593800 3983200 1610600 0 0 0 0 0 0 5427500 3884200 1543300 166350 99050 67298 0 0 0 0 0 0 31808 3539 33442 166306;166307 167491 167491 1759 1 STFSTNYR ______________________________ ______________________________ R S T Y R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 0 8 0 974.44576 P05783;F8VZY9 P05783 7 14 KRT18 Keratin, type I cytoskeletal 18 yes no 2 2.8647E-09 174.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 3 6 7 1.2768 1.1588 18.129 24 Median 1.3317 1.257 10.45 2 0 Median 1.3712 1.1502 5.6611 3 0 Median 1.2567 1.2202 2.7673 3 0 Median 1.2898 1.018 6.2102 3 0 Median 1.3977 1.4309 15.745 6 0 Median 1.227 0.97263 8.2953 7 1 Median 429250000 191570000 237670000 18444000 8105100 10339000 34833000 14609000 20224000 114520000 50481000 64039000 84106000 38676000 45431000 66841000 29413000 37428000 110500000 50287000 60214000 31809 1869 33443 166308;166309;166310;166311;166312;166313;166314;166315;166316;166317;166318;166319;166320;166321;166322;166323;166324;166325;166326;166327;166328;166329;166330;166331 167492;167493;167494;167495;167496;167497;167498;167499;167500;167501;167502;167503;167504;167505;167506;167507;167508;167509;167510;167511;167512;167513;167514;167515 167510 24 STFVLDEFK AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE FAHLPKSTFVLDEFKRKYSNEDTLSVALPY K S T F K R 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1084.5441 P26641 P26641 286 294 EEF1G Elongation factor 1-gamma yes yes 2 0.001536 80.438 By matching By MS/MS By MS/MS By matching 1 2 3 1 1.2063 1.0083 23.043 7 Median 1.4756 1.3649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0944 1.1289 21.973 2 0 Median 1.2063 1.0912 21.724 3 0 Plateau NaN NaN NaN 0 0 Median 1.225 1.0083 NaN 1 0 Median 183980000 79442000 104540000 15651000 6619600 9031700 0 0 0 76085000 31471000 44615000 91860000 41169000 50692000 0 0 0 381010 183000 198020 31810 2149 33444 166332;166333;166334;166335;166336;166337;166338 167516;167517;167518;167519;167520 167519 5 STFVLDEFKR AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE AHLPKSTFVLDEFKRKYSNEDTLSVALPYF K S T K R K 0 1 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 10 1 1240.6452 P26641 P26641 286 295 EEF1G Elongation factor 1-gamma yes yes 2;3 4.1317E-31 214.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 9 12 5 4 1.2296 1.1657 25.938 41 Median 1.234 1.2608 26.297 7 0 Median 0.93764 0.84098 29.407 4 0 Median 1.2754 1.3796 16.646 9 0 Median 1.2159 1.1215 21.212 12 1 Median 1.325 1.4133 9.6512 5 0 Median 1.1614 1.0187 10.529 4 0 Median 3792500000 1618400000 2174100000 275410000 119600000 155800000 33868000 17315000 16553000 847170000 343170000 504000000 2541600000 1100000000 1441600000 65271000 25722000 39549000 29207000 12625000 16582000 31811 2149 33445 166339;166340;166341;166342;166343;166344;166345;166346;166347;166348;166349;166350;166351;166352;166353;166354;166355;166356;166357;166358;166359;166360;166361;166362;166363;166364;166365;166366;166367;166368;166369;166370;166371;166372;166373;166374;166375;166376;166377;166378;166379 167521;167522;167523;167524;167525;167526;167527;167528;167529;167530;167531;167532;167533;167534;167535;167536;167537;167538;167539;167540;167541;167542;167543;167544;167545;167546;167547;167548;167549;167550;167551;167552;167553;167554;167555;167556;167557;167558;167559;167560;167561;167562;167563;167564;167565;167566;167567;167568;167569;167570;167571;167572;167573;167574;167575;167576;167577;167578 167564 58 STFVLSNLAEVVER VGCCGECRGSSVDPRSTFVLSNLAEVVERV RSTFVLSNLAEVVERVLTFLPAKALLRVAC R S T E R V 1 1 1 0 0 0 2 0 0 0 2 0 0 1 0 2 1 0 0 3 0 0 14 0 1562.8304 Q8NEZ5;H3BTH6;H3BRE0 Q8NEZ5 19 32 FBXO22 F-box only protein 22 yes no 2 5.7388E-05 91.855 By MS/MS By MS/MS By matching 1 1 1 0.9536 0.98894 9.0306 3 Median 0.92371 0.93913 NaN 1 0 Median 1.288 1.1195 NaN 1 1 Median 0.9536 0.98894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7308500 3117300 4191200 1418100 709650 708480 5094900 2040000 3054900 795500 367620 427880 0 0 0 0 0 0 0 0 0 31812 3432 33446 166380;166381;166382 167579;167580;167581;167582 167582 4 STFVNILK RIKKISIEGNIAAGKSTFVNILKQLCEDWE GNIAAGKSTFVNILKQLCEDWEVVPEPVAR K S T L K Q 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 1 0 0 8 0 920.53312 P27707;D6RFG8;D6RCP9 P27707 35 42 DCK Deoxycytidine kinase yes no 2 0.012648 54.571 By MS/MS 1 1.2446 1.1496 NaN 1 Median 1.2446 1.1496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11317000 4737800 6579300 11317000 4737800 6579300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31813 826 33447 166383 167583;167584 167584 2 STGASFIR NKFKTQLNLLLDKLRSTGASFIRCIKPNLK LLLDKLRSTGASFIRCIKPNLKMTSHHFEG R S T I R C 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 0 8 0 837.43447 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22 A0A0A0MRM8 660 667 MYO6 Unconventional myosin-VI yes no 2 0.0042476 82.671 By MS/MS 1 1.544 1.3099 NaN 1 Median NaN NaN NaN 0 0 Median 1.544 1.3099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3933300 1529800 2403400 0 0 0 3933300 1529800 2403400 0 0 0 0 0 0 0 0 0 0 0 0 31814 164 33448 166384 167585 167585 1 STGEAFVQFASK IVPNGITLTMDYQGRSTGEAFVQFASKEIA QGRSTGEAFVQFASKEIAENALGKHKERIG R S T S K E 2 0 0 0 0 1 1 1 0 0 0 1 0 2 0 2 1 0 0 1 0 0 12 0 1270.6194 P31942 P31942 56 67 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 6.1571E-05 94.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 2 5 1 1.0435 1.0004 11.931 16 Median 1.1219 1.0225 8.2699 2 1 Median 1.2153 1.0198 17.404 3 1 Median 0.97938 0.84922 9.0998 3 0 Plateau 1.2088 0.99926 11.239 2 0 Median 1.0262 1.0437 9.4617 5 2 Median 1.2214 0.97936 NaN 1 0 Median 910610000 432800000 477810000 34183000 15139000 19043000 26910000 11223000 15687000 62853000 31358000 31495000 12052000 5390800 6660700 731720000 351460000 380260000 42887000 18227000 24660000 31815 2208 33449 166385;166386;166387;166388;166389;166390;166391;166392;166393;166394;166395;166396;166397;166398;166399;166400 167586;167587;167588;167589;167590;167591;167592;167593;167594;167595;167596;167597;167598;167599;167600;167601;167602;167603;167604;167605;167606;167607 167594 22 STGEAFVQFASQEIAEK IVPNGITLPVDFQGRSTGEAFVQFASQEIA GEAFVQFASQEIAEKALKKHKERIGHRYIE R S T E K A 3 0 0 0 0 2 3 1 0 1 0 1 0 2 0 2 1 0 0 1 0 0 17 0 1840.8843 P31943;G8JLB6;E9PCY7;H0YB39;D6RBM0;E7EN40;D6RIU0;E5RGV0;E5RGH4;P55795 P31943 151 167 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 1.1348E-14 164.48 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 6 3 6 1 1.0991 1.0651 14.358 19 Median 1.0889 1.0096 NaN 1 0 Median 1.1415 0.96609 20.939 2 0 Median 1.0448 1.0132 21.022 6 1 Median 1.3628 1.1695 5.3029 3 0 Plateau 1.1025 1.1354 6.4387 6 0 Median 1.2404 1.0252 NaN 1 0 Median 606070000 281810000 324250000 12075000 5681300 6393400 3309300 1334500 1974900 229610000 108450000 121160000 3739200 1526900 2212400 350650000 161950000 188710000 6674900 2869100 3805900 31816 1136;2502 33450 166401;166402;166403;166404;166405;166406;166407;166408;166409;166410;166411;166412;166413;166414;166415;166416;166417;166418;166419 167608;167609;167610;167611;167612;167613;167614;167615;167616;167617;167618;167619;167620;167621;167622;167623;167624;167625;167626;167627;167628;167629;167630;167631;167632;167633;167634 167614 27 STGEALVQGLMGAAVTLK VNDAMNMGHTAKQVKSTGEALVQGLMGAAV EALVQGLMGAAVTLKNLTGLNQRR______ K S T L K N 3 0 0 0 0 1 1 3 0 0 3 1 1 0 0 1 2 0 0 2 0 0 18 0 1744.9393 O75208;H3BRC0;H3BSJ5 O75208 292 309 COQ9 Ubiquinone biosynthesis protein COQ9, mitochondrial yes no 2 4.8727E-06 76.262 By MS/MS 1 1.4698 1.2346 NaN 1 Median NaN NaN NaN 0 0 Median 1.4698 1.2346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13214000 5201700 8012400 0 0 0 13214000 5201700 8012400 0 0 0 0 0 0 0 0 0 0 0 0 31817 1655 33451 166420 167635;167636 167636 2 STGELVVQWHLKPVEQK QGLPAEENMSNTCLKSTGELVVQWHLKPVE GELVVQWHLKPVEQKAHES___________ K S T Q K A 0 0 0 0 0 2 2 1 1 0 2 2 0 0 1 1 1 1 0 3 0 0 17 1 1977.0684 Q8TCC3 Q8TCC3 141 157 MRPL30 39S ribosomal protein L30, mitochondrial yes yes 3 0.0046964 38.977 By MS/MS 1 0.77568 0.78697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77568 0.78697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7759400 4190700 3568600 0 0 0 0 0 0 7759400 4190700 3568600 0 0 0 0 0 0 0 0 0 31818 3465 33452 166421 167637 167637 1 STGFETLVVTSEDGITK SLESSSQVEPGTDRKSTGFETLVVTSEDGI GFETLVVTSEDGITKIMFNRPKKKNAINTE K S T T K I 0 0 0 1 0 0 2 2 0 1 1 1 0 1 0 2 4 0 0 2 0 0 17 0 1782.8887 A0A0C4DGA2;O75521;F1LLU7;F8WAW4;C9JB63 A0A0C4DGA2 106 122 ECI2 Enoyl-CoA delta isomerase 2, mitochondrial yes no 2 4.6267E-05 62.924 By MS/MS By MS/MS 1 1 47.547 46.089 12.572 2 Median 46.178 42.169 NaN 1 1 Median NaN NaN NaN 0 0 Median 48.956 50.373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 351060000 3912800 347150000 147390000 1638600 145760000 0 0 0 203670000 2274200 201390000 0 0 0 0 0 0 0 0 0 31819 237 33453 166422;166423 167638;167639 167638 2 STGGAPTFNVTVTK SLLQDGEFSMDLRTKSTGGAPTFNVTVTKT KSTGGAPTFNVTVTKTDKTLVLLMGKEGVH K S T T K T 1 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 4 0 0 2 0 0 14 0 1378.7092 P07737;K7EJ44 P07737 92 105 PFN1 Profilin-1 yes no 2 7.3989E-11 121.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 6 1 2 3 1.0273 0.93027 24.72 20 Median 0.97525 0.87596 27.889 8 0 Median 1.1555 0.96906 20.552 6 1 Median 0.96193 0.89986 NaN 1 0 Median 1.3515 1.044 31.39 2 0 Median 1.131 1.1559 8.2889 3 0 Median NaN NaN NaN 0 0 Median 7736700000 3674800000 4061900000 2644900000 1312300000 1332600000 4838800000 2235300000 2603500000 216360000 110020000 106340000 21901000 10359000 11542000 14687000 6810600 7876000 0 0 0 31820 1889 33454 166424;166425;166426;166427;166428;166429;166430;166431;166432;166433;166434;166435;166436;166437;166438;166439;166440;166441;166442;166443 167640;167641;167642;167643;167644;167645;167646;167647;167648;167649;167650;167651;167652;167653;167654;167655;167656;167657;167658;167659;167660;167661;167662;167663;167664;167665;167666;167667;167668;167669 167663 30 STGGAPTFNVTVTKTDK SLLQDGEFSMDLRTKSTGGAPTFNVTVTKT GGAPTFNVTVTKTDKTLVLLMGKEGVHGGL K S T D K T 1 0 1 1 0 0 0 2 0 0 0 2 0 1 1 1 5 0 0 2 0 0 17 1 1722.8788 P07737;K7EJ44 P07737 92 108 PFN1 Profilin-1 yes no 2;3 2.1268E-11 107.73 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.90841 0.81849 39.834 6 Median 1.067 0.99918 16.434 2 0 Median 0.97004 0.84093 15.6 2 0 Median 0.33864 0.38756 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48851 0.52845 NaN 1 0 Median NaN NaN NaN 0 0 Median 93003000 47744000 45260000 30225000 15385000 14840000 58149000 29166000 28983000 3140600 2068200 1072300 0 0 0 1488700 1124400 364310 0 0 0 31821 1889 33455 166444;166445;166446;166447;166448;166449 167670;167671;167672;167673;167674;167675 167674 6 STGGDFGNPLRK ______________________________ ______________________________ M S T R K F 0 1 1 1 0 0 0 3 0 0 1 1 0 1 1 1 1 0 0 0 0 0 12 1 1247.6258 P20340;F5H3K7;F5GX61 P20340 2 13 RAB6A Ras-related protein Rab-6A yes no 2 9.3517E-11 113.66 By MS/MS By MS/MS By matching 1 1 1 0.52963 0.47949 87.849 2 Median 0.85827 0.89239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32684 0.25763 NaN 1 0 Median 47038000 24999000 22040000 46356000 24656000 21700000 0 0 0 0 0 0 0 0 0 0 0 0 682290 342410 339890 31822 2079 33456 166450;166451;166452 167676;167677;167678 167678 3 STGLELETPSLVPVKK PKSLRTTAPSHAKFRSTGLELETPSLVPVK TGLELETPSLVPVKKNASTVVVSDKYNLKP R S T K K N 0 0 0 0 0 0 2 1 0 0 3 2 0 0 2 2 2 0 0 2 0 0 16 1 1696.9611 Q96QC0 Q96QC0 210 225 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 0.012511 21.841 By MS/MS By matching 1 2 0.76519 0.74751 8.9011 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64474 0.73659 NaN 1 0 Median 0.8337 0.80424 10.344 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7748200 4777900 2970300 0 0 0 0 0 0 6957300 4367300 2590000 790920 410620 380300 0 0 0 0 0 0 31823 3718 33457 166453;166454;166455 167679;167680 167679 2 STGLILDSGATHTTAIPVHDGYVLQQGIVK FLCKTAVLTAFANGRSTGLILDSGATHTTA IPVHDGYVLQQGIVKSPLAGDFITMQCREL R S T V K S 2 0 0 2 0 2 0 4 2 3 3 1 0 0 1 2 4 0 1 3 0 0 30 0 3090.635 O96019 O96019 165 194 ACTL6A Actin-like protein 6A yes yes 3;4 3.4304E-29 75.404 By MS/MS By matching By MS/MS By matching By matching 1 1 3 1 2 0.82469 0.79067 23.654 8 Median 0.83178 0.78359 NaN 1 0 Median 1.7494 1.4926 NaN 1 0 Median 0.8238 0.7916 6.2899 3 0 Median 1.0746 0.95927 NaN 1 0 Median 0.75995 0.73823 8.6498 2 0 Median NaN NaN NaN 0 0 Median 77037000 39557000 37479000 5561200 2818600 2742600 7425700 3197100 4228700 52383000 27599000 24784000 2679800 1319000 1360900 8987300 4624000 4363300 0 0 0 31824 1809 33458 166456;166457;166458;166459;166460;166461;166462;166463 167681;167682;167683;167684;167685;167686;167687;167688 167684 8 STGNFLTLTQAIDK RANGHLLLNSEKMSKSTGNFLTLTQAIDKF KSTGNFLTLTQAIDKFSADGMRLALADAGD K S T D K F 1 0 1 1 0 1 0 1 0 1 2 1 0 1 0 1 3 0 0 0 0 0 14 0 1507.7882 Q9P2J5 Q9P2J5 720 733 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00040715 71.153 By MS/MS By matching 1 2 1.1285 0.51023 46.172 3 Plateau 1.1482 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57017 0.50054 2.7132 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9423200 3991200 5432000 8927200 3696300 5230900 0 0 0 0 0 0 495980 294850 201130 0 0 0 0 0 0 31825 4224 33459 166464;166465;166466 167689;167690 167690 2 STGNFLTLTQAIDKFSADGMR RANGHLLLNSEKMSKSTGNFLTLTQAIDKF TLTQAIDKFSADGMRLALADAGDTVEDANF K S T M R L 2 1 1 2 0 1 0 2 0 1 2 1 1 2 0 2 3 0 0 0 0 0 21 1 2272.1158 Q9P2J5 Q9P2J5 720 740 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2;3 9.8329E-07 46.027 By MS/MS 3 1.1225 1.1691 16.255 3 Median 1.1225 1.1691 16.255 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9555500 4000800 5554700 9555500 4000800 5554700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31826 4224 33460 166467;166468;166469 167691;167692;167693 167692 3 STGPITVAEYMK ______________________________ KIKSTGPITVAEYMKEVLTNPAKGYYVYRD K S T M K E 1 0 0 0 0 0 1 1 0 1 0 1 1 0 1 1 2 0 1 1 0 0 12 0 1295.6431 C9JS27;Q7L592;C9JP36;C9JEL7;B4E0W7 C9JS27 11 22 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 2 0.0047583 42.743 By matching By MS/MS 1 2 0.97187 0.95722 12.694 3 Median NaN NaN NaN 0 0 Median 1.1191 0.95722 NaN 1 0 Median 0.84664 0.86996 16.167 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10707000 5934400 4772900 0 0 0 163280 66705 96572 10544000 5867700 4676300 0 0 0 0 0 0 0 0 0 31827 721 33461 166470;166471;166472 167694;167695 167695 2 STGSFVGELMYK VYPIDLVKTRMQNQRSTGSFVGELMYKNSF NQRSTGSFVGELMYKNSFDCFKKVLRYEGF R S T Y K N 0 0 0 0 0 0 1 2 0 0 1 1 1 1 0 2 1 0 1 1 0 0 12 0 1317.6275 Q9UJS0 Q9UJS0 361 372 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 0.0058057 40.058 By MS/MS By matching 1 1 1.0483 0.9373 4.3378 2 Median 0.96859 0.90899 NaN 1 0 Median 1.1346 0.9665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16360000 7990900 8368600 11950000 6013400 5936800 4409300 1977500 2431800 0 0 0 0 0 0 0 0 0 0 0 0 31828 4297 33462 166473;166474 167696 167696 1 STGSIVGQQPFGGAR KVLRNAAGNFYINDKSTGSIVGQQPFGGAR STGSIVGQQPFGGARASGTNDKPGGPHYIL K S T A R A 1 1 0 0 0 2 0 4 0 1 0 0 0 1 1 2 1 0 0 1 0 0 15 0 1460.7372 P30038 P30038 510 524 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes yes 2 1.324E-13 121.6 By MS/MS 1 0.70269 0.66524 NaN 1 Median 0.70269 0.66524 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16512000 11188000 5323500 16512000 11188000 5323500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31829 2177 33463 166475 167697 167697 1 STGSTYGFLQPLTR VALGKWSVVEHVGPKSTGSTYGFLQPLTRL KSTGSTYGFLQPLTRLCQSRPYETITPKTD K S T T R L 0 1 0 0 0 1 0 2 0 0 2 0 0 1 1 2 3 0 1 0 0 0 14 0 1526.7729 Q5VUA4 Q5VUA4 1666 1679 ZNF318 Zinc finger protein 318 yes yes 2 0.00011851 83.182 By MS/MS 1 0.82478 0.91209 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82478 0.91209 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3985500 1999400 1986100 0 0 0 0 0 0 3985500 1999400 1986100 0 0 0 0 0 0 0 0 0 31830 3113 33464 166476 167698 167698 1 STGTETGSNINVNSELNPSTGNR VNKPLSATGRKPYVRSTGTETGSNINVNSE NINVNSELNPSTGNRSREQSSEAAETGVSE R S T N R S 0 1 5 0 0 0 2 3 0 1 1 0 0 0 1 4 4 0 0 1 0 0 23 0 2348.084 Q29RF7 Q29RF7 1159 1181 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 3.7949E-57 204.72 By matching By MS/MS By MS/MS 1 2 3 0.86434 0.79382 9.0219 6 Median NaN NaN NaN 0 0 Median 0.89386 0.78413 NaN 1 0 Median 0.75207 0.82669 6.5021 2 0 Median 1.0629 0.87221 13.083 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54705000 28017000 26687000 0 0 0 360940 192400 168540 47114000 24310000 22804000 7229400 3514800 3714600 0 0 0 0 0 0 31831 3003 33465 166477;166478;166479;166480;166481;166482 167699;167700;167701;167702;167703 167702 5 STGTFVVSQPLNYR ______________________________ MSTGTFVVSQPLNYRGGARVEPADASGTEK M S T Y R G 0 1 1 0 0 1 0 1 0 0 1 0 0 1 1 2 2 0 1 2 0 0 14 0 1567.7995 P49189 P49189 2 15 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.00029976 74.162 By matching By MS/MS By MS/MS 1 2 1 1.0503 0.97052 13.003 4 Median 0.84845 0.82182 NaN 1 0 Median 1.2447 1.0638 0.88926 2 0 Median 0.89262 0.89101 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936000 1949500 1986500 620210 332130 288090 1889000 925910 963060 1426800 691480 735320 0 0 0 0 0 0 0 0 0 31832 2372 33466 166483;166484;166485;166486 167704;167705 167705 2 STGTLLNNAIK LTWLAQKQKSNGCFRSTGTLLNNAIKGGVD GCFRSTGTLLNNAIKGGVDDEVTLSAYITI R S T I K G 1 0 2 0 0 0 0 1 0 1 2 1 0 0 0 1 2 0 0 0 0 0 11 0 1130.6295 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1086 1096 yes yes 2 0.00034824 110.41 By MS/MS By MS/MS 3 3 0.091715 0.082566 97.222 6 Median 0.12436 0.12349 27.362 3 3 Median 0.071224 0.062873 109.49 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22929000 20963000 1965900 13289000 11836000 1453200 9640100 9127400 512690 0 0 0 0 0 0 0 0 0 0 0 0 + 31833 734 33467 166487;166488;166489;166490;166491;166492 167706;167707;167708;167709;167710;167711 167706 6 STHGLAILGPENPK DKLLAVSDRYLGTGKSTHGLAILGPENPKI KSTHGLAILGPENPKIAKDPSWIIQ_____ K S T P K I 1 0 1 0 0 0 1 2 1 1 2 1 0 0 2 1 1 0 0 0 0 0 14 0 1432.7674 Q5JRX3;A0A0A0MRX9 Q5JRX3 1014 1027 PITRM1 Presequence protease, mitochondrial yes no 2;3 0.00048865 69.01 By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 0.82232 0.79428 23.538 6 Median 0.69968 0.66567 16.548 2 1 Median 0.93277 0.80247 27.532 2 0 Median 0.83922 0.84308 NaN 1 0 Median 1.2848 1.1036 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20598000 10313000 10285000 7341800 4081600 3260200 8331500 3953800 4377700 1429700 624380 805310 3495300 1653200 1842100 0 0 0 0 0 0 31834 3050 33468 166493;166494;166495;166496;166497;166498;166499 167712;167713;167714;167715;167716;167717 167715 6 STHSELLEDYYQSGR VSRPFLDLSHPRHLKSTHSELLEDYYQSGR STHSELLEDYYQSGRMLLRMSQALGRIVLA K S T G R M 0 1 0 1 0 1 2 1 1 0 2 0 0 0 0 3 1 0 2 0 0 0 15 0 1783.8013 P28288 P28288 348 362 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 4.0297E-07 94.717 By MS/MS By matching By matching 2 2 1 1.2955 1.2696 6.9184 5 Median 1.2879 1.2553 1.6014 2 0 Median 1.2583 1.1944 9.0231 2 0 Median 1.3511 1.3555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33555000 13335000 20219000 16482000 6264900 10217000 6460600 2654900 3805700 10612000 4415600 6196700 0 0 0 0 0 0 0 0 0 31835 2163 33469 166500;166501;166502;166503;166504 167718;167719 167719 1 STIFPLDGVVR ALRALNFAYTVSTQRSTIFPLDGVVRMLLF STQRSTIFPLDGVVRMLLFRDCEEATDFLT R S T V R M 0 1 0 1 0 0 0 1 0 1 1 0 0 1 1 1 1 0 0 2 0 0 11 0 1202.6659 O60318 O60318 896 906 MCM3AP Germinal-center associated nuclear protein yes yes 2 0.00065281 65.305 By MS/MS By matching By matching 1 1 1 0.67929 0.7517 19.886 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67929 0.7517 NaN 1 0 Median 0.58585 0.50892 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80388 0.66161 NaN 1 0 Median 3996800 2003200 1993600 0 0 0 0 0 0 3809700 1903700 1906000 91884 45747 46137 0 0 0 95179 53775 41404 31836 1612 33470 166505;166506;166507 167720 167720 1 STIGAYFLKPK CHQGKLSCSTWNYQKSTIGAYFLKPKELKK NYQKSTIGAYFLKPKELKKDDITATAVDIT K S T P K E 1 0 0 0 0 0 0 1 0 1 1 2 0 1 1 1 1 0 1 0 0 0 11 1 1223.6914 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 422 432 WDR36 WD repeat-containing protein 36 yes no 3 0.0027974 39.917 By MS/MS 2 0.82354 0.93851 20.481 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82354 0.93851 20.481 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7179000 4078400 3100600 0 0 0 0 0 0 7179000 4078400 3100600 0 0 0 0 0 0 0 0 0 31837 188 33471 166508;166509 167721 167721 1 STIGGQIMYLTGMVDK EHVNVVFIGHVDAGKSTIGGQIMYLTGMVD TIGGQIMYLTGMVDKRTLEKYEREAKEKNR K S T D K R 0 0 0 1 0 1 0 3 0 2 1 1 2 0 0 1 2 0 1 1 0 0 16 0 1712.8477 P15170;H3BR35;H3BSV8 P15170 88 103 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.0017019 38.021 By MS/MS By matching By matching 3 2 1 1.1952 1.0858 23.143 6 Median NaN NaN NaN 0 0 Median 1.314 1.1685 25.8 3 0 Median 1.1577 1.1944 23.871 2 0 Median 0.98993 0.87942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14277000 6653900 7623300 0 0 0 12240000 5682900 6557000 1869300 875010 994300 167890 95902 71987 0 0 0 0 0 0 31838 2016 33472 166510;166511;166512;166513;166514;166515 167722;167723 167723 2 STIGGQIMYLTGMVDKR EHVNVVFIGHVDAGKSTIGGQIMYLTGMVD IGGQIMYLTGMVDKRTLEKYEREAKEKNRE K S T K R T 0 1 0 1 0 1 0 3 0 2 1 1 2 0 0 1 2 0 1 1 0 0 17 1 1868.9488 P15170;H3BR35;H3BSV8 P15170 88 104 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2;3 3.3634E-05 73.848 By MS/MS By MS/MS By MS/MS 4 4 1 1.2164 1.1831 23.304 9 Median 1.2347 1.2554 26.567 4 0 Median 1.0314 0.99024 14.834 4 0 Median 1.2985 1.3784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28028000 13447000 14581000 12069000 5380700 6688400 12383000 6490600 5892500 3575300 1575300 2000100 0 0 0 0 0 0 0 0 0 31839 2016 33473 166516;166517;166518;166519;166520;166521;166522;166523;166524 167724;167725;167726;167727;167728;167729;167730;167731 167727 8 STIGVEFATR LLSRFTRNEFNLESKSTIGVEFATRSIQVD NLESKSTIGVEFATRSIQVDGKTIKAQIWD K S T T R S 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 10 0 1079.5611 H3BSC1;P62491;H3BMH2;Q15907 Q15907 42 51 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.0002262 128.38 By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 1.1985 1.0493 17.159 6 Median 1.1167 1.0647 NaN 1 0 Median 1.2796 1.0829 20.621 3 0 Median 0.97973 0.94134 NaN 1 0 Median 1.1538 0.95783 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 336720000 150700000 186020000 262400000 117110000 145290000 57953000 25274000 32679000 11270000 6011600 5258200 5099000 2303500 2795500 0 0 0 0 0 0 31840 1233;2976 33474 166525;166526;166527;166528;166529;166530 167732;167733;167734;167735;167736;167737;167738;167739;167740 167732 9 STIGVMVTASHNPEEDNGVK FRMGLLAVLRSKQTKSTIGVMVTASHNPEE MVTASHNPEEDNGVKLVDPLGEMLAPSWEE K S T V K L 1 0 2 1 0 0 2 2 1 1 0 1 1 0 1 2 2 0 0 3 0 0 20 0 2083.9844 H0Y987;O95394;A0A494C0G1;A0A494C163;A0A494C099;D6RCQ8;D6RF77;D6RC77 H0Y987 55 74 PGM3 Phosphoacetylglucosamine mutase yes no 3 1.7567E-14 106.57 By MS/MS By MS/MS 2 1 0.78039 0.76458 8.859 3 Median 0.74987 0.71628 9.2283 2 0 Median 0.93398 0.79461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40344000 23922000 16422000 35758000 21310000 14448000 4585600 2611900 1973700 0 0 0 0 0 0 0 0 0 0 0 0 31841 1165 33475 166531;166532;166533 167741;167742;167743;167744 167741 4 STIIGESISR SSPNIAKEMHVGHLRSTIIGESISRLFEFA VGHLRSTIIGESISRLFEFAGYDVLRLNHV R S T S R L 0 1 0 0 0 0 1 1 0 3 0 0 0 0 0 3 1 0 0 0 0 0 10 0 1061.5717 P54136 P54136 214 223 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 3.706E-06 156.01 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.2533 1.1283 27.869 6 Median 1.247 1.1715 NaN 1 0 Median 1.2596 1.0866 NaN 1 0 Median 1.6529 1.6861 5.4496 2 2 Median 1.0989 0.91838 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.121 0.91732 NaN 1 0 Median 130810000 52876000 77937000 46619000 20629000 25990000 61354000 23104000 38250000 19583000 7774800 11808000 2449400 1099500 1350000 0 0 0 808170 268600 539570 31842 2480 33476 166534;166535;166536;166537;166538;166539 167745;167746;167747;167748;167749;167750;167751;167752 167746 8 STISTELALALR RHIILVLSGKGGVGKSTISTELALALRHAG VGKSTISTELALALRHAGKKVGILDVDLCG K S T L R H 2 1 0 0 0 0 1 0 0 1 3 0 0 0 0 2 2 0 0 0 0 0 12 0 1273.7242 Q9Y5Y2;H3BNF0;H3BRK5;H3BMW1;H3BNS4 Q9Y5Y2 29 40 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 2 0.00029876 82.749 By MS/MS By MS/MS 1 1 1.3733 1.135 35.339 2 Median NaN NaN NaN 0 0 Median 1.7159 1.4571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0992 0.884 NaN 1 0 Median 8655500 3519900 5135600 0 0 0 1885000 602610 1282400 0 0 0 0 0 0 0 0 0 6770500 2917300 3853200 31843 4472 33477 166540;166541 167753;167754 167753 2 STITSREIQTAVR RIAGEASRLAHYNKRSTITSREIQTAVRLL KRSTITSREIQTAVRLLLPGELAKHAVSEG R S T V R L 1 2 0 0 0 1 1 0 0 2 0 0 0 0 0 2 3 0 0 1 0 0 13 1 1460.7947 Q16778;P33778;P23527;P06899;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 88 100 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 3 2.5845E-07 112.44 By MS/MS By MS/MS 4 5 1.0637 1.1293 23.282 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8972 0.99051 21.511 4 0 Median 1.4588 1.2349 18.002 5 0 Median 42231000 20267000 21965000 0 0 0 0 0 0 0 0 0 0 0 0 28192000 14472000 13719000 14040000 5794300 8245200 31844 2117;2521 33478 166542;166543;166544;166545;166546;166547;166548;166549;166550 167755;167756;167757;167758;167759;167760;167761;167762;167763 167756 9 STLADYSAQKDLEPESDR AEKVPEESVLPLVQKSTLADYSAQKDLEPE ADYSAQKDLEPESDRSAQPLPLKIEELALA K S T D R S 2 1 0 3 0 1 2 0 0 0 2 1 0 0 1 3 1 0 1 0 0 0 18 1 2023.9334 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 449 466 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 2.0326E-08 93.226 By MS/MS By MS/MS 1 2 0.78308 0.91712 23.839 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76495 0.91712 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98579 1.1023 30.182 2 1 Median NaN NaN NaN 0 0 Median 29782000 15662000 14120000 0 0 0 0 0 0 8329100 4705200 3623800 0 0 0 21453000 10957000 10496000 0 0 0 31845 4560 33479 166551;166552;166553 167764;167765;167766;167767 167766 4 STLDIVLANK YINPHNGKHSPMVAKSTLDIVLANKDRLNS PMVAKSTLDIVLANKDRLNSAIIYDRDFSY K S T N K D 1 0 1 1 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1072.6128 P23921 P23921 119 128 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2 0.00038123 80.165 By MS/MS By MS/MS 1 1 1.2206 1.0915 8.4648 2 Median 1.2678 1.1588 NaN 1 0 Median 1.1752 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27360000 11651000 15709000 8770600 3582200 5188400 18589000 8068700 10521000 0 0 0 0 0 0 0 0 0 0 0 0 31846 2121 33480 166554;166555 167768;167769;167770;167771 167771 4 STLDIVLANKDR YINPHNGKHSPMVAKSTLDIVLANKDRLNS VAKSTLDIVLANKDRLNSAIIYDRDFSYNY K S T D R L 1 1 1 2 0 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 12 1 1343.7409 P23921 P23921 119 130 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2;3 3.7064E-15 152.54 By MS/MS 2 1.0843 1.1152 8.7849 2 Median 1.0843 1.1152 8.7849 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54802000 24797000 30005000 54802000 24797000 30005000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31847 2121 33481 166556;166557 167772;167773;167774 167774 3 STLEAETR KARLQRLEDELNRAKSTLEAETRVKQRLEC DELNRAKSTLEAETRVKQRLECEKQQIQND K S T T R V 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 8 0 905.44543 P15924 P15924 1841 1848 DSP Desmoplakin yes yes 2 0.028622 40.268 By MS/MS By MS/MS 1 1 0.94092 0.87069 6.7668 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80461 0.83001 NaN 1 0 Median 1.1003 0.91336 NaN 1 0 Median 1246000 652070 593970 0 0 0 0 0 0 0 0 0 0 0 0 816970 462860 354100 429080 189210 239870 31848 2021 33482 166558;166559 167775;167776 167776 2 STLEPVEK ITRARFEELCSDLFRSTLEPVEKALRDAKL LCSDLFRSTLEPVEKALRDAKLDKAQIHDL R S T E K A 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 8 0 901.47566 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;P17066;P48741 A0A0G2JIW1 313 320 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 1;2 0.0034847 93.374 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 2 3 1.1164 1.0338 14.918 17 Median 1.1752 1.1118 19.009 4 0 Median 1.1009 0.90584 6.8112 5 0 Median 1.069 1.0916 2.374 2 0 Median 1.2296 1.0431 NaN 1 0 Median 1.2435 1.2354 8.0738 2 0 Median 1.2438 1.019 7.1286 3 0 Plateau 505220000 236730000 268490000 70560000 31542000 39019000 328750000 156980000 171770000 70839000 32661000 38178000 8021500 3621400 4400000 15411000 6718300 8693000 11647000 5211700 6435000 31849 278;2035 33483 166560;166561;166562;166563;166564;166565;166566;166567;166568;166569;166570;166571;166572;166573;166574;166575;166576 167777;167778;167779;167780;167781;167782;167783;167784;167785;167786;167787;167788;167789;167790;167791;167792;167793;167794;167795;167796 167787 19 STLHNWMNEFKR HYRNIPGPHMVLVPKSTLHNWMNEFKRWVP VPKSTLHNWMNEFKRWVPSLRVICFVGDKD K S T K R W 0 1 2 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 12 1 1561.746 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 242 253 SMARCA1 Probable global transcription activator SNF2L1 no no 3 9.8816E-07 105.17 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.0419 1.0805 14.646 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91432 1.0363 NaN 1 0 Median 1.4554 1.3987 NaN 1 0 Median 0.94475 1.0089 9.6984 2 0 Median 1.2709 1.1206 NaN 1 0 Median 19162000 9657700 9504100 0 0 0 0 0 0 11279000 6075200 5203900 565710 219630 346080 6929300 3171800 3757500 387750 191100 196640 31850 167;643 33484 166577;166578;166579;166580;166581 167797;167798;167799 167798 3 STLHNWMSEFKR HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP VPKSTLHNWMSEFKRWVPTLRSVCLIGDKE K S T K R W 0 1 1 0 0 0 1 0 1 0 1 1 1 1 0 2 1 1 0 0 0 0 12 1 1534.7351 O60264 O60264 239 250 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 1.5042E-05 94.191 By MS/MS By MS/MS By matching 1 3 2 1.021 1.2804 15.971 6 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0527 1.1941 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0689 1.1758 17.533 3 0 Plateau 1.0224 0.91257 12.446 2 0 Median 52455000 24785000 27670000 0 0 0 0 0 0 26197000 11986000 14210000 0 0 0 23517000 11265000 12252000 2740600 1533600 1207000 31851 1608 33485 166582;166583;166584;166585;166586;166587 167800;167801;167802 167800 3 STLIGEDVNPLIK RSSLFSRKLTALYTKSTLIGEDVNPLIKLD TKSTLIGEDVNPLIKLDDAVNVDEIMTDTS K S T I K L 0 0 1 1 0 0 1 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 13 0 1397.7766 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 337 349 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.00027608 90.108 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 0.96777 0.88502 19.3 5 Median 0.59634 0.59952 NaN 1 0 Median 0.96777 0.88502 NaN 1 0 Median 0.71733 0.77116 NaN 1 1 Median 1.1234 0.9401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1178 0.95324 NaN 1 0 Median 9964400 5630400 4333900 1616000 916520 699460 249440 128250 121190 6978300 4038400 2939900 927350 437950 489400 0 0 0 193330 109310 84019 31852 2080 33486 166588;166589;166590;166591;166592 167803;167804 167803 2 STLINSLFLTDLYPER FEFTLMVVGESGLGKSTLINSLFLTDLYPE TLINSLFLTDLYPERVIPGAAEKIERTVQI K S T E R V 0 1 1 1 0 0 1 0 0 1 4 0 0 1 1 2 2 0 1 0 0 0 16 0 1880.9884 Q15019;B5MCX3;C9J2Q4;C9JB25;C9J938;C9IY94;C9IZU3;C9JQJ4;C9JZI2;B5MD47;F8WB65;C9JFT1;A0A1B0GXJ2 Q15019 51 66 SEPT2 Septin-2 yes no 2 3.3679E-51 184.1 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 4 1 1 2 0.86492 0.87122 12.286 11 Median 0.78137 0.78754 2.4521 2 1 Median 0.99805 0.87122 NaN 1 0 Median 0.86377 0.9051 15.866 4 2 Median 1.1361 0.99761 NaN 1 0 Median 0.7935 0.84484 NaN 1 0 Median 1.2015 0.98098 7.5446 2 0 Median 289020000 150700000 138320000 4058900 2331300 1727500 7487500 3641100 3846400 274540000 143280000 131260000 105470 49624 55848 1376100 756140 619930 1451200 642470 808690 31853 2914 33487 166593;166594;166595;166596;166597;166598;166599;166600;166601;166602;166603 167805;167806;167807;167808;167809;167810;167811;167812;167813;167814;167815;167816 167812 12 STLINSLFLTDLYSPEYPGPSHR FEFTLMVVGESGLGKSTLINSLFLTDLYSP LTDLYSPEYPGPSHRIKKTVQVEQSKVLIK K S T H R I 0 1 1 1 0 0 1 1 1 1 4 0 0 1 3 4 2 0 2 0 0 0 23 0 2606.3017 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1 E7ES33 44 66 SEPT7 Septin-7 yes no 2;3 9.218E-43 121.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 4 5 1 0.80543 0.70177 19.245 12 Median 0.54322 0.54111 NaN 1 0 Median 0.80945 0.69997 NaN 1 0 Median 0.59063 0.58674 6.3579 4 1 Median 0.85469 0.73583 16.037 5 1 Median NaN NaN NaN 0 0 Median 1.0667 0.84176 NaN 1 0 Median 188970000 104190000 84781000 3583000 2169400 1413700 1912300 936830 975460 167200000 92660000 74537000 16172000 8368600 7803000 0 0 0 103120 50526 52592 31854 870 33488 166604;166605;166606;166607;166608;166609;166610;166611;166612;166613;166614;166615 167817;167818;167819;167820;167821;167822;167823;167824;167825;167826;167827;167828;167829;167830;167831;167832;167833;167834 167824 18 STLINTLFK FEFNIMVVGQSGLGKSTLINTLFKSKISRK QSGLGKSTLINTLFKSKISRKSVQPTSEER K S T F K S 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 0 0 0 9 0 1035.5964 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9;K7EJZ2;K7ER14;K7ENQ5;K7EN52;K7EKN4;K7EIR4 Q9UHD8 312 320 SEPT9 Septin-9 yes no 2 0.0012806 83.265 By matching By matching By MS/MS By matching By matching By matching 2 2 6 4 2 1 1.1741 1.1562 20.016 17 Median 1.0171 0.99065 21.849 2 0 Median 0.93925 0.80059 27.978 2 0 Median 1.1611 1.1978 11.119 6 0 Median 1.4633 1.2603 14.74 4 0 Median 1.0853 1.0634 12.942 2 0 Median 1.4941 1.2516 NaN 1 0 Median 170210000 75898000 94315000 3706400 1669400 2037000 9958100 4088800 5869300 113610000 52765000 60847000 36863000 14446000 22417000 5378800 2694600 2684200 695960 235110 460850 31855 4276 33489 166616;166617;166618;166619;166620;166621;166622;166623;166624;166625;166626;166627;166628;166629;166630;166631;166632 167835;167836;167837;167838;167839 167838 5 STLIPILHQK RNTGHKIETDLPQIRSTLIPILHQKAKRGT LPQIRSTLIPILHQKAKRGTPHQAKQAVHC R S T Q K A 0 0 0 0 0 1 0 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 10 0 1148.6917 Q29RF7 Q29RF7 718 727 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.00056975 73.26 By MS/MS By MS/MS By matching 2 2 1 0.89529 0.88997 6.3657 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79823 0.86388 8.4261 2 0 Median 0.98578 0.86957 9.2225 2 0 Median NaN NaN NaN 0 0 Median 1.0703 0.88997 NaN 1 0 Median 21338000 10998000 10340000 0 0 0 0 0 0 16783000 8899900 7883300 3597900 1638200 1959700 0 0 0 956810 460140 496660 31856 3003 33490 166633;166634;166635;166636;166637 167840;167841;167842;167843;167844 167841 5 STLLFGQR VICCSPSSYNESETKSTLLFGQRAKTIKNT YNESETKSTLLFGQRAKTIKNTVCVNVELT K S T Q R A 0 1 0 0 0 1 0 1 0 0 2 0 0 1 0 1 1 0 0 0 0 0 8 0 920.50797 P33176 P33176 314 321 KIF5B Kinesin-1 heavy chain yes yes 2 0.008475 63.148 By MS/MS By MS/MS By matching 1 2 1 1.2691 1.1619 18.32 4 Median 1.3574 1.3079 NaN 1 1 Median 1.1665 0.99553 5.1229 2 0 Median NaN NaN NaN 0 0 Median 1.6415 1.4057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21742000 9564000 12178000 10770000 4521300 6248900 10302000 4740300 5561500 0 0 0 669720 302340 367390 0 0 0 0 0 0 31857 2221 33491 166638;166639;166640;166641 167845;167846;167847 167846 3 STLLLYQSPTTGLFPTK ETLWDKLDHYYRIVKSTLLLYQSPTTGLFP LLLYQSPTTGLFPTKTCGGDQKAKIQDSLY K S T T K T 0 0 0 0 0 1 0 1 0 0 4 1 0 1 2 2 4 0 1 0 0 0 17 0 1866.0139 Q93100;I3L3F2;H3BV13;I3NHZ9;H3BQ89 Q93100 58 74 PHKB Phosphorylase b kinase regulatory subunit beta yes no 2 0.045803 21.759 By MS/MS 1 0.76334 0.77418 NaN 1 Median 0.76334 0.77418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 848510 496140 352370 848510 496140 352370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31858 3579 33492 166642 167848 167848 1 STLLPPEASEGSSSFLGK SQKSSSPLSSTRSKRSTLLPPEASEGSSSF LPPEASEGSSSFLGKLMGFIATPFIKLFQL R S T G K L 1 0 0 0 0 0 2 2 0 0 3 1 0 1 2 5 1 0 0 0 0 0 18 0 1805.9047 O94919 O94919 313 330 ENDOD1 Endonuclease domain-containing 1 protein yes yes 2 0.016219 38.021 By MS/MS 1 1.2157 1.2066 NaN 1 Median 1.2157 1.2066 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3118900 1420300 1698600 3118900 1420300 1698600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31859 1737 33493 166643 167849 167849 1 STLMDTLFNTK FCFNILCVGETGIGKSTLMDTLFNTKFESD GIGKSTLMDTLFNTKFESDPATHNEPGVRL K S T T K F 0 0 1 1 0 0 0 0 0 0 2 1 1 1 0 1 3 0 0 0 0 0 11 0 1269.6275 D6RGI3;D6RER5;Q9NVA2;D6RDU5;D6RDP1;D6R9Y6;B1AMS2;Q14141 D6RGI3 55 65 SEPT11;SEPT6 Septin-11;Septin-6 no no 2 0.00028738 79.148 By matching By MS/MS By MS/MS By matching 1 5 5 1 1.1863 1.184 69.677 12 Median 1.1641 1.1179 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1564 1.1105 9.5952 5 0 Median 1.4122 1.2347 106.47 5 0 Median NaN NaN NaN 0 0 Median 2.5616 2.0961 NaN 1 0 Median 139370000 63109000 76264000 2710100 1214300 1495700 0 0 0 106610000 49420000 57192000 29743000 12407000 17336000 0 0 0 307920 67402 240520 31860 822;573 33494;33495 166644;166645;166646;166647;166648;166649;166650;166651;166652;166653;166654;166655 167850;167851;167852;167853;167854;167855 167853 223 6 STLMLEHQAFEK CVLKYLGKTHNLWFRSTLMLEHQAFEKGLS WFRSTLMLEHQAFEKGLSLQIKPKQTTEFY R S T E K G 1 0 0 0 0 1 2 0 1 0 2 1 1 1 0 1 1 0 0 0 0 0 12 0 1432.7021 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2688 2699 TRRAP Transformation/transcription domain-associated protein yes no 2 3.8785E-06 135.86 By MS/MS By MS/MS By matching 2 2 1 0.95565 1.0343 3.7066 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93829 1.0092 3.6534 2 0 Median 1.036 1.0019 4.5022 2 2 Median 0.93096 1.0582 NaN 1 0 Median NaN NaN NaN 0 0 Median 40491000 20838000 19653000 0 0 0 0 0 0 21994000 10897000 11097000 5405000 2452600 2952400 13092000 7488500 5603500 0 0 0 31861 991 33496;33497 166656;166657;166658;166659;166660 167856;167857;167858;167859;167860;167861 167858 345 6 STLNEIYFGK ANIGRLVEDMENKIRSTLNEIYFGKTKDIV ENKIRSTLNEIYFGKTKDIVNGLRSVQTFA R S T G K T 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1170.5921 B1AK87;B1AK88;P47756 B1AK87 214 223 CAPZB F-actin-capping protein subunit beta yes no 2 0.00038325 79.906 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 1 1 2 1 1.2092 1.0642 33.325 12 Median 1.1819 1.0932 13.478 2 0 Median 1.2899 1.069 18.04 5 1 Median 1.0995 1.0595 NaN 1 0 Median 1.3789 1.1559 NaN 1 0 Median 0.97879 1.0165 28.902 2 0 Median 0.39987 0.3744 NaN 1 0 Median 141820000 64064000 77761000 23764000 12043000 11721000 64519000 26872000 37647000 23973000 11586000 12387000 9998900 4084500 5914400 18134000 8708200 9425900 1435000 770250 664730 31862 566 33498 166661;166662;166663;166664;166665;166666;166667;166668;166669;166670;166671;166672 167862;167863;167864;167865;167866;167867;167868;167869;167870 167864 9 STLPDADR IEEIEGLISAHDQFKSTLPDADREREAILA SAHDQFKSTLPDADREREAILAIHKEAQRI K S T D R E 1 1 0 2 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 8 0 873.41921 O43707;F5GXS2;H7C144 O43707 575 582 ACTN4 Alpha-actinin-4 yes no 2 0.0069279 69.198 By MS/MS 2 0.8571 0.73982 7.5528 2 Median NaN NaN NaN 0 0 Median 0.8571 0.73982 7.5528 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6415100 3263200 3151800 0 0 0 6415100 3263200 3151800 0 0 0 0 0 0 0 0 0 0 0 0 31863 1585 33499 166673;166674 167871 167871 1 STLPDADRER IEEIEGLISAHDQFKSTLPDADREREAILA HDQFKSTLPDADREREAILAIHKEAQRIAE K S T E R E 1 2 0 2 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 10 1 1158.5629 O43707;F5GXS2;H7C144 O43707 575 584 ACTN4 Alpha-actinin-4 yes no 2 0.0084861 62.546 By MS/MS By MS/MS By matching 1 2 1 0.77594 0.77846 19.974 4 Median 0.93539 1.0392 NaN 1 0 Median 0.77594 0.75782 17.412 2 0 Median 0.61189 0.70703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24255000 12748000 11507000 5650400 2836100 2814300 18124000 9625700 8498300 480620 286000 194620 0 0 0 0 0 0 0 0 0 31864 1585 33500 166675;166676;166677;166678 167872;167873;167874;167875;167876 167874 5 STLQTLPEIVAK AMYLPDTLSPADQLKSTLQTLPEIVAKEAQ QLKSTLQTLPEIVAKEAQVKVAEVEGEQVD K S T A K E 1 0 0 0 0 1 1 0 0 1 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1298.7446 O95202 O95202 435 446 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.00063206 64.297 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.1787 1.0802 12.755 6 Median 0.98404 0.89143 NaN 1 0 Median 1.3107 1.1385 2.3689 2 0 Median 1.0081 1.0421 NaN 1 0 Median 1.393 1.2108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.071 0.90984 NaN 1 0 Median 27963000 12877000 15087000 12344000 5955800 6388600 7587400 3029200 4558200 7131800 3487100 3644600 690570 312110 378460 0 0 0 209220 92409 116810 31865 1754 33501 166679;166680;166681;166682;166683;166684 167877;167878;167879 167878 3 STLQTMESDIYTEVR QTSAKSREWDMEALRSTLQTMESDIYTEVR STLQTMESDIYTEVRELVSLKQEQQAFKEA R S T V R E 0 1 0 1 0 1 2 0 0 1 1 0 1 0 0 2 3 0 1 1 0 0 15 0 1771.8298 Q07065 Q07065 312 326 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 7.1121E-07 85.288 By MS/MS By MS/MS By matching 2 2 1 1.7518 1.516 29.816 5 Median 1.1645 1.1089 2.6361 2 1 Median 1.9865 1.7257 18.322 2 0 Median NaN NaN NaN 0 0 Median 2.4393 2.0562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41808000 18346000 23462000 33959000 15745000 18214000 7320300 2440400 4879900 0 0 0 529180 160590 368590 0 0 0 0 0 0 31866 2730 33502;33503 166685;166686;166687;166688;166689 167880;167881;167882;167883;167884;167885 167885 1414 6 STLRDQINSDHR ERLMDVMAKEMLTKKSTLRDQINSDHRTRA TKKSTLRDQINSDHRTRAMQDRYMEVSGNL K S T H R T 0 2 1 2 0 1 0 0 1 1 1 0 0 0 0 2 1 0 0 0 0 0 12 1 1440.707 Q12874 Q12874 31 42 SF3A3 Splicing factor 3A subunit 3 yes yes 3 0.0042916 35.737 By MS/MS By MS/MS By MS/MS 1 1 1 0.98554 1.028 30.517 3 Median 1.0434 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98554 1.0576 NaN 1 0 Median 0.69558 0.61497 NaN 1 0 Median 5991800 3047800 2943900 1003100 449420 553640 0 0 0 0 0 0 0 0 0 3837500 1963500 1874100 1151200 634980 516230 31867 2767 33504 166690;166691;166692 167886;167887;167888;167889;167890 167889 5 STLSNQLLGR RVLRVVLLGAPNAGKSTLSNQLLGRKVFPV PNAGKSTLSNQLLGRKVFPVSRKVHTTRCQ K S T G R K 0 1 1 0 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 10 0 1087.5986 O75616;J3QSB2;J3QRV9;J3QT61 O75616 127 136 ERAL1 GTPase Era, mitochondrial yes no 2 0.001652 81.548 By MS/MS 2 1.1108 1.2038 11.93 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1108 1.2038 11.93 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10256000 4573600 5682400 0 0 0 0 0 0 10256000 4573600 5682400 0 0 0 0 0 0 0 0 0 31868 1687 33505 166693;166694 167891;167892 167891 2 STLSQTVPSKGELSR PISPLKTGVSKPIVKSTLSQTVPSKGELSR STLSQTVPSKGELSREICLQSQSKDKSTTP K S T S R E 0 1 0 0 0 1 1 1 0 0 2 1 0 0 1 4 2 0 0 1 0 0 15 1 1588.842 Q9NQW6 Q9NQW6 336 350 ANLN Actin-binding protein anillin yes yes 2;3 0.00028955 54.143 By MS/MS 2 0.85887 0.97287 10.366 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85887 0.97287 10.366 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11854000 6319700 5534700 0 0 0 0 0 0 11854000 6319700 5534700 0 0 0 0 0 0 0 0 0 31869 4069 33506 166695;166696 167893;167894 167893 2 STLTDSLVCK NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA VDHGKSTLTDSLVCKAGIIASARAGETRFT K S T C K A 0 0 0 1 1 0 0 0 0 0 2 1 0 0 0 2 2 0 0 1 0 0 10 0 1122.5591 P13639 P13639 33 42 EEF2 Elongation factor 2 yes yes 2 0.0013144 66.621 By MS/MS By matching By matching 3 1 1 1.1057 1.1238 34.22 5 Median NaN NaN NaN 0 0 Median 1.0698 0.92619 21.821 3 1 Median 1.1057 1.1238 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9517 2.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median 25379000 11691000 13688000 0 0 0 24382000 11352000 13030000 380970 124370 256590 0 0 0 616670 214670 402000 0 0 0 31870 1992 33507 166697;166698;166699;166700;166701 167895;167896;167897;167898;167899 167895 5 STLVHSLFLTDLYK ______________________________ KSTLVHSLFLTDLYKDRKLLSAEERISQTV K S T Y K D 0 0 0 1 0 0 0 0 1 0 4 1 0 1 0 2 2 0 1 1 0 0 14 0 1635.8872 C9JM82;B4DJ62;G3XAH0;Q99719;E7EPG2;E7EX32;F8W9E5;E7EQM7 C9JM82 11 24 SEPT5 Septin-5 yes no 2;3 4.9788E-17 191.53 By matching By MS/MS 1 2 0.80611 0.83284 57.476 3 Median 1.9767 2.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77167 0.79722 6.1817 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31994000 17066000 14929000 1889700 580560 1309100 0 0 0 30104000 16485000 13619000 0 0 0 0 0 0 0 0 0 31871 592 33508 166702;166703;166704 167900;167901 167900 2 STLVNTLFK ______________________________ QSGLGKSTLVNTLFKSQVSRKASSWNREEK K S T F K S 0 0 1 0 0 0 0 0 0 0 2 1 0 1 0 1 2 0 0 1 0 0 9 0 1021.5808 B1AHR1;A0A2R8Y4H2;Q9UH03;B1AHR2 B1AHR1 11 19 SEPT3 Neuronal-specific septin-3 yes no 2 0.0061228 55.531 By matching By MS/MS 1 1 0.77823 0.76133 8.8124 2 Median NaN NaN NaN 0 0 Median 0.79176 0.71534 NaN 1 0 Median 0.76493 0.81028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5222900 2949600 2273300 0 0 0 309380 164940 144440 4913500 2784700 2128800 0 0 0 0 0 0 0 0 0 31872 363 33509 166705;166706 167902 167902 1 STLYVSPHPDAFPSLR ______________________________ TLYVSPHPDAFPSLRALIAARYGEAGEGPG M S T L R A 1 1 0 1 0 0 0 0 1 0 2 0 0 1 3 3 1 0 1 1 0 0 16 0 1785.905 P26640;A0A140T954;A2ABF4;A0A0G2JJT9 P26640 2 17 VARS Valine--tRNA ligase yes no 2 1.1326E-10 128.67 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 1 1 2 1 1 0.74581 0.68731 26.489 9 Median 0.61416 0.61211 11.336 3 0 Median 0.85059 0.74508 NaN 1 0 Median 0.76627 0.84266 NaN 1 0 Median 0.82315 0.69731 14.693 2 0 Median 1.3453 1.2997 NaN 1 0 Median 0.71546 0.56382 NaN 1 0 Median 31779000 17130000 14649000 18759000 10191000 8567700 1092200 576670 515570 8965700 4945700 4020000 2389000 1179100 1209900 455300 176110 279190 117710 61007 56698 31873 2148 33510 166707;166708;166709;166710;166711;166712;166713;166714;166715 167903;167904;167905;167906;167907 167903 5 STMMTQEQIQK KNLEISIDTLMAKIKSTMMTQEQIQKEYDA AKIKSTMMTQEQIQKEYDALVKSSEELLSA K S T Q K E 0 0 0 0 0 3 1 0 0 1 0 1 2 0 0 1 2 0 0 0 0 0 11 0 1323.6163 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75 A0A0A0MRM8 887 897 MYO6 Unconventional myosin-VI yes no 2 0.00014624 103.55 By matching By MS/MS 1 1 1.1965 1.11 16.283 2 Median 0.97857 0.98927 NaN 1 0 Median 1.4628 1.2454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6730300 2951900 3778400 1082000 626150 455870 5648300 2325800 3322500 0 0 0 0 0 0 0 0 0 0 0 0 31874 164 33511 166716;166717 167908;167909 167909 2 STMQELNSR GAGGGDGGILTANEKSTMQELNSRLASYLD LTANEKSTMQELNSRLASYLDKVQALEEAN K S T S R L 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 9 0 1064.4921 P35527;CON__P35527 P35527 155 163 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.334E-18 163.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 10 8 10 6 5 0.037439 0.032414 84.028 42 Median 0.057269 0.055621 8.3683 5 5 Median 0.035809 0.029302 63.54 10 10 Median 0.08449 0.089577 87.368 6 6 Median 0.033089 0.028651 71.998 10 10 Median 0.031105 0.031951 69.924 6 6 Median 0.026833 0.022433 150.36 5 5 Median 243200000 234880000 8322000 27462000 26220000 1241900 69601000 66654000 2946800 23984000 22994000 990320 39599000 38287000 1311100 58250000 57010000 1240300 24305000 23713000 591700 + 31875 2242 33512 166718;166719;166720;166721;166722;166723;166724;166725;166726;166727;166728;166729;166730;166731;166732;166733;166734;166735;166736;166737;166738;166739;166740;166741;166742;166743;166744;166745;166746;166747;166748;166749;166750;166751;166752;166753;166754;166755;166756;166757;166758;166759;166760;166761 167910;167911;167912;167913;167914;167915;167916;167917;167918;167919;167920;167921;167922;167923;167924;167925;167926;167927;167928;167929;167930;167931;167932;167933;167934;167935;167936;167937;167938;167939;167940;167941;167942;167943;167944;167945;167946;167947;167948;167949;167950;167951;167952;167953 167932 44 STMVDPAINLFFLK QYLKQVQQPSVAQLRSTMVDPAINLFFLKM RSTMVDPAINLFFLKMKGELEQTKDKLEQA R S T L K M 1 0 1 1 0 0 0 0 0 1 2 1 1 2 1 1 1 0 0 1 0 0 14 0 1594.8429 Q15007;A0A087X1R4 Q15007 110 123 WTAP Pre-mRNA-splicing regulator WTAP yes no 2 0.002348 43.512 By matching By MS/MS By matching 1 2 3 1.0614 0.94408 10.108 6 Median NaN NaN NaN 0 0 Median 1.2372 1.0964 NaN 1 0 Median 0.90743 0.89571 0.24111 2 0 Median 1.1169 0.99337 10.712 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12662000 6703000 5959200 0 0 0 216490 79292 137200 11569000 6202000 5366900 876760 421670 455090 0 0 0 0 0 0 31876 2910 33513 166762;166763;166764;166765;166766;166767 167954;167955 167954 2 STMVGTPYWMAPEVVTR DFGFCAQITPEQSKRSTMVGTPYWMAPEVV MVGTPYWMAPEVVTRKAYGPKVDIWSLGIM R S T T R K 1 1 0 0 0 0 1 1 0 0 0 0 2 0 2 1 3 1 1 3 0 0 17 0 1923.9223 Q13177;H7C1X3;Q13153;E9PM17;B3KNX7;H0YCG5 Q13177 401 417 PAK2;PAK1 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase no no 2 7.6181E-06 82.85 By MS/MS By matching By MS/MS By matching By matching 3 2 1 1 1 0.76371 0.7459 24.128 8 Median 0.73728 0.69877 41.727 3 1 Median 0.88468 0.76402 3.2601 2 0 Median 0.74714 0.78586 NaN 1 0 Median 0.78065 0.67201 NaN 1 0 Median 0.71251 0.7452 NaN 1 0 Median NaN NaN NaN 0 0 Median 20687000 11422000 9265000 17535000 9688500 7846400 593170 318670 274490 2096100 1171400 924680 218930 97804 121130 243550 145290 98265 0 0 0 31877 2794;2791 33514;33515 166768;166769;166770;166771;166772;166773;166774;166775 167956;167957;167958;167959;167960 167957 1497 5 STNDRDATPLSR IVSSSKSALHSSVPKSTNDRDATPLSRAMD VPKSTNDRDATPLSRAMDFEGKLGCDSESN K S T S R A 1 2 1 2 0 0 0 0 0 0 1 0 0 0 1 2 2 0 0 0 0 0 12 1 1331.643 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1386 1397 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 0.029694 22.232 By MS/MS By MS/MS By matching 2 2 1 0.81801 0.90357 15.298 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76888 0.90594 18.609 2 0 Median 1.0613 0.97496 10.753 2 0 Median 0.69082 0.74731 NaN 1 0 Median NaN NaN NaN 0 0 Median 7712600 4155600 3557000 0 0 0 0 0 0 4891900 2681000 2210900 1315100 644930 670140 1505600 829690 675900 0 0 0 31878 2762 33516 166776;166777;166778;166779;166780 167961;167962;167963;167964 167964 4 STNEAMEWMNNK QYDHLDAADMTKVEKSTNEAMEWMNNKLNL VEKSTNEAMEWMNNKLNLQNKQSLTMDPVV K S T N K L 1 0 3 0 0 0 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 12 0 1453.5966 P34932 P34932 737 748 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.00016144 87.149 By MS/MS By matching By MS/MS 2 2 1 1.1874 1.0286 17.774 5 Median 1.0494 1.0324 14.714 2 0 Median 1.1855 1.0235 0.70239 2 0 Median 1.3431 1.4757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40600000 17925000 22675000 19297000 8582700 10714000 14765000 6410400 8354100 6538900 2931700 3607200 0 0 0 0 0 0 0 0 0 31879 2230 33517 166781;166782;166783;166784;166785 167965;167966;167967 167966 3 STNEAMEWMNNKLNLQNK QYDHLDAADMTKVEKSTNEAMEWMNNKLNL EAMEWMNNKLNLQNKQSLTMDPVVKSKEIE K S T N K Q 1 0 5 0 0 1 2 0 0 0 2 2 2 0 0 1 1 1 0 0 0 0 18 1 2164.0041 P34932 P34932 737 754 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 2.8234E-05 48.216 By MS/MS 1 1.2931 1.3552 NaN 1 Median 1.2931 1.3552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10360000 3764000 6595700 10360000 3764000 6595700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31880 2230 33518 166786 167968;167969 167968 2 STNGDTFLGGEDFDQALLR DISILEIQKGVFEVKSTNGDTFLGGEDFDQ DTFLGGEDFDQALLRHIVKEFKRETGVDLT K S T L R H 1 1 1 3 0 1 1 3 0 0 3 0 0 2 0 1 2 0 0 0 0 0 19 0 2054.9545 P38646 P38646 266 284 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 2.0345E-08 84.506 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1 1.315 1.2247 13.781 12 Median 1.1622 1.152 3.5225 4 0 Median 1.3894 1.2031 5.1536 3 0 Median 1.3069 1.4164 4.5946 2 0 Median 1.6321 1.3989 9.3971 2 0 Median 1.6014 1.7114 NaN 1 1 Median NaN NaN NaN 0 0 Median 50480000 21704000 28776000 35830000 15609000 20221000 6157800 2557300 3600500 6479200 2800800 3678300 727830 270280 457550 1285300 466550 818780 0 0 0 31881 2277 33519 166787;166788;166789;166790;166791;166792;166793;166794;166795;166796;166797;166798 167970;167971;167972;167973;167974;167975;167976;167977;167978;167979;167980;167981;167982;167983 167973 14 STNIAAAASEPHS HPEIVQLVSELEAERSTNIAAAASEPHS__ ERSTNIAAAASEPHS_______________ R S T H S - 4 0 1 0 0 0 1 0 1 1 0 0 0 0 1 3 1 0 0 0 0 0 13 0 1254.584 Q7Z4H3 Q7Z4H3 192 204 HDDC2 HD domain-containing protein 2 yes yes 2 0.0096582 54.982 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31882 3245 33520 166799 167984 167984 1 STNKGTAYTFFTPGNLK NSSEDYVHRIGRTARSTNKGTAYTFFTPGN NKGTAYTFFTPGNLKQARELIKVLEEANQA R S T L K Q 1 0 2 0 0 0 0 2 0 0 1 2 0 2 1 1 4 0 1 0 0 0 17 1 1845.9261 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 512 528 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 0.028793 15.766 By matching By matching By MS/MS By matching 1 1 3 2 0.92893 0.98216 27.345 7 Median 1.7652 1.8261 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73577 0.83285 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88504 0.98216 9.0477 3 0 Median 1.217 1.096 17.348 2 0 Median 16534000 7573200 8961200 1946000 790330 1155700 0 0 0 3188900 1528800 1660000 0 0 0 10577000 4952500 5624900 822150 301510 520640 31883 343 33521 166800;166801;166802;166803;166804;166805;166806 167985 167985 1 STNLNCSVIADVR STRTFLQTVSSEKVRSTNLNCSVIADVRHD VRSTNLNCSVIADVRHDGSEPCVDVLFGDG R S T V R H 1 1 2 1 1 0 0 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 13 0 1447.7089 Q96EL3 Q96EL3 44 56 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 2 2.0095E-06 118.28 By MS/MS By MS/MS 1 1 1.8914 1.7564 18.047 2 Median NaN NaN NaN 0 0 Median 1.8192 1.546 NaN 1 0 Median 1.9665 1.9954 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15241000 5903900 9336600 0 0 0 9561300 3495200 6066000 5679300 2408700 3270600 0 0 0 0 0 0 0 0 0 31884 3637 33522 166807;166808 167986;167987;167988 167987 3 STNPGISIGDVAK SGFFLFCSEFRPKIKSTNPGISIGDVAKKL IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ K S T A K K 1 0 1 1 0 0 0 2 0 2 0 1 0 0 1 2 1 0 0 1 0 0 13 0 1257.6565 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 113 125 HMGB3 High mobility group protein B3 yes no 2 1.6533E-06 116.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 0.98208 0.86814 61.317 6 Median 0.37841 0.34926 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87084 0.81777 NaN 1 0 Median 1.1195 0.92241 0.12255 2 0 Median 0.25401 0.26021 NaN 1 1 Median 1.4332 1.1826 NaN 1 0 Median 440600000 260180000 180420000 62549000 47699000 14850000 0 0 0 205940000 109000000 96938000 106860000 51016000 55842000 53910000 46598000 7311700 11347000 5871400 5475500 31885 880 33523 166809;166810;166811;166812;166813;166814 167989;167990;167991;167992;167993;167994;167995;167996 167994 8 STNPGISIGDVAKK SGFFLFCSEFRPKIKSTNPGISIGDVAKKL KSTNPGISIGDVAKKLGEMWNNLNDSEKQP K S T K K L 1 0 1 1 0 0 0 2 0 2 0 2 0 0 1 2 1 0 0 1 0 0 14 1 1385.7514 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 113 126 HMGB3 High mobility group protein B3 yes no 2;3 0.00020563 77.541 By MS/MS By MS/MS 2 2 1.1331 1.0288 16.663 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93203 0.92716 26.923 2 1 Median 1.1408 1.0288 0.17022 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77605000 37013000 40592000 0 0 0 0 0 0 36353000 17927000 18426000 41251000 19086000 22166000 0 0 0 0 0 0 31886 880 33524 166815;166816;166817;166818 167997;167998;167999;168000;168001;168002 168000 6 STNVTVAAAR GSIHRPGIVVDYQNKSTNVTVAAARGIKRK DYQNKSTNVTVAAARGIKRKMMQPFNKPSG K S T A R G 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 2 0 0 10 0 988.53016 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 226 235 ZNF326 DBIRD complex subunit ZNF326 yes no 2 0.011506 57.59 By MS/MS 1 1.0061 1.0676 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0061 1.0676 NaN 1 1 Median NaN NaN NaN 0 0 Median 2367700 1171100 1196600 0 0 0 0 0 0 0 0 0 0 0 0 2367700 1171100 1196600 0 0 0 31887 3042 33525 166819 168003 168003 1 STNVVYQAHHVSR ______________________________ QKSTNVVYQAHHVSRNKRGQVVGTRGGFRG K S T S R N 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 2 1 0 1 3 0 0 13 0 1496.7484 O95340 O95340 15 27 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2;3 0.00034556 56.482 By MS/MS By MS/MS 3 2 1.3121 1.2959 33.453 5 Median 1.3527 1.3355 35.364 3 2 Median 1.2456 1.0769 3.8799 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18016000 8021000 9995500 7804600 3427500 4377000 10212000 4593500 5618500 0 0 0 0 0 0 0 0 0 0 0 0 31888 1765 33526 166820;166821;166822;166823;166824 168004;168005;168006;168007;168008;168009;168010 168008 7 STPAAVGAMEDK DAQGPKQMNIPGGDRSTPAAVGAMEDKSAE GDRSTPAAVGAMEDKSAEHKRTQYSCYCCK R S T D K S 3 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 12 0 1175.5492 Q9UGI8 Q9UGI8 214 225 TES Testin yes yes 2 0.019383 33.088 By MS/MS 1 0.80652 0.68995 NaN 1 Median NaN NaN NaN 0 0 Median 0.80652 0.68995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389800 793400 596420 0 0 0 1389800 793400 596420 0 0 0 0 0 0 0 0 0 0 0 0 31889 4263 33527 166825 168011 168011 1 STPAITLESPDIK PVWFLYSLLMKLFQRSTPAITLESPDIKYP QRSTPAITLESPDIKYPLRLIDREIISHDT R S T I K Y 1 0 0 1 0 0 1 0 0 2 1 1 0 0 2 2 2 0 0 0 0 0 13 0 1370.7293 P00387;B1AHF3 P00387 30 42 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2 0.00024815 79.693 By MS/MS By MS/MS By MS/MS 1 1 1 1.1391 0.95634 55.514 3 Median 0.7922 0.71904 NaN 1 0 Median 1.1391 0.95634 NaN 1 0 Median 2.1949 2.1002 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47255000 23581000 23674000 27752000 15162000 12590000 15628000 7024200 8603600 3875100 1395100 2480000 0 0 0 0 0 0 0 0 0 31890 1816 33528 166826;166827;166828 168012;168013;168014;168015;168016;168017 168014 6 STPAITLESPDIKYPLR PVWFLYSLLMKLFQRSTPAITLESPDIKYP PAITLESPDIKYPLRLIDREIISHDTRRFR R S T L R L 1 1 0 1 0 0 1 0 0 2 2 1 0 0 3 2 2 0 1 0 0 0 17 1 1900.0306 P00387;B1AHF3 P00387 30 46 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes no 2;3 6.9879E-06 76.522 By MS/MS By matching By matching By matching 3 2 1 1 0.93968 0.83698 23.197 7 Median 0.66541 0.65928 4.4691 3 0 Median 0.93979 0.84939 2.0812 2 0 Median 0.94646 1.047 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1413 1.1978 NaN 1 0 Median NaN NaN NaN 0 0 Median 63107000 35784000 27323000 50259000 29135000 21124000 11382000 5956000 5426400 741020 348840 392180 0 0 0 724120 344340 379770 0 0 0 31891 1816 33529 166829;166830;166831;166832;166833;166834;166835 168018;168019;168020;168021 168019 4 STPEYFAER GDFEKLMLAVVKCIRSTPEYFAERLFKAMK VVKCIRSTPEYFAERLFKAMKGLGTRDNTL R S T E R L 1 1 0 0 0 0 2 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 9 0 1098.4982 P08133 P08133 251 259 ANXA6 Annexin A6 yes yes 2 0.00043967 127.56 By MS/MS By MS/MS By matching 2 3 1 0.83486 0.76302 17.986 6 Median 0.83486 0.79003 3.1653 2 0 Median 0.7679 0.72931 28.193 3 0 Median NaN NaN NaN 0 0 Median 0.87439 0.75361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55273000 26948000 28325000 30920000 16115000 14804000 24145000 10729000 13416000 0 0 0 208940 103940 104990 0 0 0 0 0 0 31892 1898 33530 166836;166837;166838;166839;166840;166841 168022;168023;168024;168025;168026 168024 5 STPGLRPQHLSGLEMIR LLGLPLRVQKIRAGRSTPGLRPQHLSGLEM PGLRPQHLSGLEMIRDLCDGQLEGAEIGST R S T I R D 0 2 0 0 0 1 1 2 1 1 3 0 1 0 2 2 1 0 0 0 0 0 17 1 1891.0098 O00442 O00442 44 60 RTCA RNA 3-terminal phosphate cyclase yes yes 3 0.00020262 40.52 By MS/MS By matching By MS/MS 1 1 1 0.89205 0.91429 12.79 3 Median 0.70976 0.74679 NaN 1 0 Median 1.0132 0.94622 NaN 1 0 Median 0.89205 0.91429 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25611000 12251000 13360000 7482500 3777300 3705300 455020 207170 247850 17674000 8266600 9407000 0 0 0 0 0 0 0 0 0 31893 1464 33531 166842;166843;166844 168027;168028 168027 2 STPKEETVNDPEEAGHR LEETAGSTSIPKRKKSTPKEETVNDPEEAG PKEETVNDPEEAGHRSGSKKKRKFSKEEPV K S T H R S 1 1 1 1 0 0 4 1 1 0 0 1 0 0 2 1 2 0 0 1 0 0 17 1 1894.8657 O00567 O00567 537 553 NOP56 Nucleolar protein 56 yes yes 3;4 1.0159E-05 52.254 By MS/MS By MS/MS 2 4 0.69974 0.74262 33.292 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69974 0.74262 0.6679 2 0 Median NaN NaN NaN 0 0 Median 0.68381 0.72253 42.366 4 0 Median NaN NaN NaN 0 0 Median 15885000 8780500 7104700 0 0 0 0 0 0 10044000 5493400 4550800 0 0 0 5841000 3287100 2553900 0 0 0 31894 1472 33532 166845;166846;166847;166848;166849;166850 168029;168030;168031;168032;168033;168034;168035 168030 7 STPVIVSATTK PGEDAVPTGPDCQAKSTPVIVSATTKKGLS CQAKSTPVIVSATTKKGLSSDLEGEKTTSL K S T T K K 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 2 3 0 0 2 0 0 11 0 1102.6234 Q02952 Q02952 1483 1493 AKAP12 A-kinase anchor protein 12 yes yes 2 0.00018539 77.14 By matching By MS/MS 1 2 1.0406 0.92072 28.076 3 Median 1.3486 1.3389 NaN 1 0 Median 0.95169 0.84352 12.384 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17613000 8961600 8651600 3694700 1658200 2036500 13919000 7303400 6615100 0 0 0 0 0 0 0 0 0 0 0 0 31895 2705 33533 166851;166852;166853 168036;168037;168038;168039 168037 4 STPVNVPISQK DLKDLDPIGKATLVKSTPVNVPISQKFTDL TLVKSTPVNVPISQKFTDLFEKMVPVSVQQ K S T Q K F 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 2 1 0 0 2 0 0 11 0 1168.6452 Q8WUM4 Q8WUM4 340 350 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0028371 51.276 By MS/MS By MS/MS By matching 2 1 1 0.71586 0.72112 30.582 4 Median 0.53658 0.52732 32.561 2 0 Median 0.89459 0.78333 NaN 1 0 Median 0.75587 0.81693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12875000 6924100 5951300 6345100 3654500 2690600 4011300 1945000 2066300 2519100 1324600 1194500 0 0 0 0 0 0 0 0 0 31896 3493 33534 166854;166855;166856;166857 168040;168041;168042 168041 3 STPVTSAVQIPEVK TGNKAEDIKGTECVKSTPVTSAVQIPEVKQ KSTPVTSAVQIPEVKQDTVSEPVTPASLAA K S T V K Q 1 0 0 0 0 1 1 0 0 1 0 1 0 0 2 2 2 0 0 3 0 0 14 0 1454.7981 Q96KR1 Q96KR1 528 541 ZFR Zinc finger RNA-binding protein yes yes 2 9.2234E-05 86.911 By matching By MS/MS By matching By MS/MS 1 3 1 1 0.84351 0.90395 9.6474 6 Median NaN NaN NaN 0 0 Median 0.83846 0.73491 NaN 1 0 Median 0.84332 0.89763 5.3686 3 1 Median 1.0265 0.91031 NaN 1 0 Median 0.9369 0.95851 NaN 1 0 Median NaN NaN NaN 0 0 Median 51633000 25838000 25795000 0 0 0 2369200 1255500 1113700 39474000 19594000 19880000 250750 121500 129250 9539200 4866400 4672800 0 0 0 31897 3697 33535 166858;166859;166860;166861;166862;166863 168043;168044;168045;168046;168047 168044 5 STPVTVVLPDTK TDILFTEQERGVGIKSTPVTVVLPDTKGKS GIKSTPVTVVLPDTKGKSYLFNIMDTPGHV K S T T K G 0 0 0 1 0 0 0 0 0 0 1 1 0 0 2 1 3 0 0 3 0 0 12 0 1255.7024 Q15029 Q15029 183 194 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.00060606 70.808 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1 0.71729 0.6889 15.426 9 Median 0.75731 0.73198 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66356 0.70937 4.1414 2 0 Median 0.95863 0.83311 2.124 2 2 Median 0.61751 0.6279 15.677 3 1 Median 0.78789 0.64501 NaN 1 0 Median 79501000 47420000 32081000 13666000 7967800 5697900 0 0 0 22928000 13273000 9654500 13809000 6758500 7050700 28795000 19252000 9542800 303090 168210 134880 31898 2917 33536 166864;166865;166866;166867;166868;166869;166870;166871;166872 168048;168049;168050;168051;168052;168053;168054;168055 168049 8 STQAATQVVLNVPETR GAAGRSLYFGENRLRSTQAATQVVLNVPET TQAATQVVLNVPETRVTCLESGLRVASEDS R S T T R V 2 1 1 0 0 2 1 0 0 0 1 0 0 0 1 1 3 0 0 3 0 0 16 0 1712.9057 O75439;G3V0E4;F8WAZ6;F8WEA6;F8WBE1 O75439 44 59 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 1.7212E-72 246.3 By MS/MS By MS/MS By MS/MS 1 1 1 0.84869 0.8332 17.891 3 Median 0.84341 0.7947 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84869 0.8332 NaN 1 0 Median 1.2836 1.1063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52660000 26681000 25980000 26499000 13760000 12739000 0 0 0 16900000 8796400 8103300 9261700 4124100 5137600 0 0 0 0 0 0 31899 1673 33537 166873;166874;166875 168056;168057;168058;168059 168057 4 STQAPLIIRPDSGNPLDTVLK EKIWGEDLRHLIVSRSTQAPLIIRPDSGNP IIRPDSGNPLDTVLKVLEILGKKFPVTENS R S T L K V 1 1 1 2 0 1 0 1 0 2 3 1 0 0 3 2 2 0 0 1 0 0 21 1 2234.227 P43490;A0A0C4DFS8 P43490 303 323 NAMPT Nicotinamide phosphoribosyltransferase yes no 3 2.043E-12 80.156 By MS/MS By MS/MS By matching 2 1 1 0.73724 0.70315 37.05 4 Median 0.63088 0.64614 9.5742 2 0 Median 0.78347 0.7151 NaN 1 0 Median 1.2337 1.382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28368000 16143000 12226000 13620000 7644300 5975600 6726400 3928900 2797500 8021900 4569400 3452500 0 0 0 0 0 0 0 0 0 31900 2326 33538 166876;166877;166878;166879 168060;168061;168062 168062 3 STQESLTAGGTDLKR KQMPRAAPATRVTRRSTQESLTAGGTDLKR STQESLTAGGTDLKRELHPPATSHEAPGTK R S T K R E 1 1 0 1 0 1 1 2 0 0 2 1 0 0 0 2 3 0 0 0 0 0 15 1 1562.79 A0A0B4J2G4;Q15345;A0A087X0S7;A0A087WTU1;A0A0C4DH00 A0A0B4J2G4 304 318 LRRC41 Leucine-rich repeat-containing protein 41 yes no 2;3 0.0005772 47.288 By MS/MS By MS/MS By matching 3 1 1 0.85134 0.9672 18.658 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85134 0.9672 14.154 3 0 Median 1.0096 0.96784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79071 0.69585 NaN 1 0 Median 8088700 4296900 3791700 0 0 0 0 0 0 6855000 3749900 3105100 738070 328030 410040 0 0 0 495590 219010 276590 31901 226 33539 166880;166881;166882;166883;166884 168063;168064;168065 168063 3 STQGVTLTDLQEAEK SQRKARSRQARQSRRSTQGVTLTDLQEAEK STQGVTLTDLQEAEKTIGRSRSTRTREQEN R S T E K T 1 0 0 1 0 2 2 1 0 0 2 1 0 0 0 1 3 0 0 1 0 0 15 0 1618.805 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 695 709 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 2.7408E-07 93.011 By MS/MS By MS/MS 1 1 1.1468 1.1686 33.589 2 Median 1.5259 1.4819 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8619 0.92154 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16336000 7894600 8441400 7332500 2932500 4399900 0 0 0 9003600 4962100 4041500 0 0 0 0 0 0 0 0 0 31902 1508 33540 166885;166886 168066;168067 168067 2 STQQDIYAGSVQPILR QETLKYQFDAFYGERSTQQDIYAGSVQPIL TQQDIYAGSVQPILRHLLEGQNASVLAYGP R S T L R H 1 1 0 1 0 3 0 1 0 2 1 0 0 0 1 2 1 0 1 1 0 0 16 0 1774.9214 Q14807;H3BRB3;H3BTH5 Q14807 98 113 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 1.3007E-08 103.75 By MS/MS 1 0.97527 0.99302 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97527 0.99302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11528000 6337600 5190300 0 0 0 0 0 0 11528000 6337600 5190300 0 0 0 0 0 0 0 0 0 31903 1228 33541 166887 168068 168068 1 STQYQELLQDLSEK KLNSRSSQIDQAIVKSTQYQELLQDLSEKV KSTQYQELLQDLSEKVRAVGQRLSVQSAIS K S T E K V 0 0 0 1 0 3 2 0 0 0 3 1 0 0 0 2 1 0 1 0 0 0 14 0 1680.8206 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4685 4698 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 4.4548E-08 126.66 By MS/MS By MS/MS By MS/MS 2 1 1 1.0504 1.0217 64.977 4 Median 1.6869 1.7156 99.749 2 0 Median 1.2184 1.0621 NaN 1 0 Median 0.90552 0.98282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19622000 9909900 9712400 12659000 6506700 6152400 3811400 1666000 2145400 3151800 1737200 1414600 0 0 0 0 0 0 0 0 0 31904 1220 33542 166888;166889;166890;166891 168069;168070;168071;168072 168069 4 STQYQELLQDLSEKVR KLNSRSSQIDQAIVKSTQYQELLQDLSEKV TQYQELLQDLSEKVRAVGQRLSVQSAISTQ K S T V R A 0 1 0 1 0 3 2 0 0 0 3 1 0 0 0 2 1 0 1 1 0 0 16 1 1935.9902 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4685 4700 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.033684 15.392 By MS/MS 1 0.9791 1.0032 NaN 1 Median 0.9791 1.0032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2796600 1262800 1533800 2796600 1262800 1533800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31905 1220 33543 166892 168073 168073 1 STQYQSLLR QLSDRCDWIDQAIVKSTQYQSLLRSLSDKL DQAIVKSTQYQSLLRSLSDKLSDLDNKLSS K S T L R S 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 1094.572 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2652 2660 DST Dystonin yes no 2 0.00067887 105.14 By matching By MS/MS By MS/MS 1 1 1 1.3403 1.3505 17.803 3 Median 1.3403 1.3505 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96588 1.0434 NaN 1 0 Median 1.6885 1.4681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8894700 3977000 4917600 3769000 1402100 2366900 0 0 0 4442000 2313200 2128800 683710 261800 421910 0 0 0 0 0 0 31906 934 33544 166893;166894;166895 168074;168075 168074 2 STSESFIQHIVSLVHHVK FRSIFDHIKLPQASKSTSESFIQHIVSLVH ESFIQHIVSLVHHVKEQYFKSAAMTLNERF K S T V K E 0 0 0 0 0 1 1 0 3 2 1 1 0 1 0 4 1 0 0 3 0 0 18 0 2047.0851 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7 Q9NYF8 600 617 BCLAF1 Bcl-2-associated transcription factor 1 yes no 3 7.6915E-05 41.554 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 1 1 1.17 1.0866 26.347 8 Median 1.0009 0.99351 NaN 1 0 Median 1.3281 1.1601 43.4 3 0 Median 1.0281 1.0884 22.85 2 0 Median NaN NaN NaN 0 0 Median 1.111 1.1286 NaN 1 0 Median 1.2643 1.0461 NaN 1 0 Median 49727000 22517000 27211000 2407300 1334500 1072900 14596000 6194800 8401400 3346500 1682400 1664100 0 0 0 24709000 11320000 13389000 4668700 1985400 2683300 31907 4175 33545 166896;166897;166898;166899;166900;166901;166902;166903 168076;168077;168078;168079;168080;168081;168082;168083 168080 8 STSGEGFQFGK FGQTSSTFTFADLAKSTSGEGFQFGKKDPN DLAKSTSGEGFQFGKKDPNFKGFSGAGEKL K S T G K K 0 0 0 0 0 1 1 3 0 0 0 1 0 2 0 2 1 0 0 0 0 0 11 0 1143.5197 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 1953 1963 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.00013837 97.635 By matching By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0508 1.063 19.15 6 Median NaN NaN NaN 0 0 Median 1.0839 0.9452 33.348 2 0 Median 1.0781 1.175 6.0461 2 0 Median 1.048 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.045 0.89644 NaN 1 0 Median 26291000 13616000 12675000 0 0 0 3474200 1732700 1741500 20164000 10609000 9554500 1672600 845380 827270 0 0 0 979890 428390 551500 31908 2401;525;3762 33546 166904;166905;166906;166907;166908;166909 168084;168085;168086;168087;168088 168084 5 STSIQSFK IIVNWVNRTLSEAGKSTSIQSFKDKTISSS TLSEAGKSTSIQSFKDKTISSSLAVVDLID K S T F K D 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 3 1 0 0 0 0 0 8 0 896.46035 P13797;A0A0A0MSQ0 P13797 538 545 PLS3 Plastin-3 yes no 2 0.0033829 98.523 By MS/MS By MS/MS 1 2 1.3803 1.1448 14.324 3 Median 1.1598 1.0841 NaN 1 0 Median 1.5098 1.2755 15.296 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92727000 39597000 53130000 19294000 8931800 10362000 73433000 30665000 42767000 0 0 0 0 0 0 0 0 0 0 0 0 31909 1995 33547 166910;166911;166912 168089;168090;168091;168092 168091 4 STSIQSFKDK IIVNWVNRTLSEAGKSTSIQSFKDKTISSS SEAGKSTSIQSFKDKTISSSLAVVDLIDAI K S T D K T 0 0 0 1 0 1 0 0 0 1 0 2 0 1 0 3 1 0 0 0 0 0 10 1 1139.5823 P13797;A0A0A0MSQ0 P13797 538 547 PLS3 Plastin-3 yes no 2 0.0016704 92.838 By MS/MS By MS/MS 1 1 1.2307 1.1501 10.161 2 Median 1.1455 1.0704 NaN 1 0 Median 1.3222 1.2358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27874000 13727000 14147000 20619000 10527000 10092000 7254600 3200300 4054300 0 0 0 0 0 0 0 0 0 0 0 0 31910 1995 33548 166913;166914 168093;168094;168095 168093 3 STSLASVSQLASK ASKSSSQTSGSLVSKSTSLASVSQLASKSS SKSTSLASVSQLASKSSSQTSTSQLPSKST K S T S K S 2 0 0 0 0 1 0 0 0 0 2 1 0 0 0 5 1 0 0 1 0 0 13 0 1277.6827 Q9NXV6 Q9NXV6 387 399 CDKN2AIP CDKN2A-interacting protein yes yes 2 0.00036754 75.416 By MS/MS 1 1.083 1.0921 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.083 1.0921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13440000 6668100 6771900 0 0 0 0 0 0 13440000 6668100 6771900 0 0 0 0 0 0 0 0 0 31911 4169 33549 166915 168096;168097 168097 2 STSQVAASLLASK PKSSSSTNTSLLTSKSTSQVAASLLASKSS SKSTSQVAASLLASKSSSQTSGSLVSKSTS K S T S K S 3 0 0 0 0 1 0 0 0 0 2 1 0 0 0 4 1 0 0 1 0 0 13 0 1261.6878 Q9NXV6 Q9NXV6 362 374 CDKN2AIP CDKN2A-interacting protein yes yes 2 0.00047245 72.652 By MS/MS By matching By MS/MS 1 1 1 0.99132 0.99699 18.533 3 Median 0.81208 0.78048 NaN 1 0 Median 1.2995 1.1225 NaN 1 0 Median 0.99132 0.99699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20345000 10075000 10270000 3581800 1481700 2100100 1238700 491480 747230 15525000 8101800 7422800 0 0 0 0 0 0 0 0 0 31912 4169 33550 166916;166917;166918 168098;168099;168100 168099 3 STSSFSCLSR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R S T S R H 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 10 0 1130.5026 CON__P35908;CON__P35908v2;P35908 CON__P35908 36 45 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.0025402 73.985 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.015129 0.01433 43.416 2 Median NaN NaN NaN 0 0 Median 0.013034 0.010542 NaN 1 1 Median 0.01756 0.01948 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18921000 18747000 174870 0 0 0 7119600 7019300 100320 5000000 4925400 74549 0 0 0 1483200 1483200 0 5318600 5318600 0 + 31913 764;765 33551 166919;166920;166921;166922;166923 168101;168102;168103;168104;168105 168102 5 STSSHGTDEMESSSYR RPRKTNFKGLSEDTRSTSSHGTDEMESSSY TSSHGTDEMESSSYRDRSPHRSSPSDTRPK R S T Y R D 0 1 0 1 0 0 2 1 1 0 0 0 1 0 0 6 2 0 1 0 0 0 16 0 1759.6955 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 181 196 PHF6 PHD finger protein 6 yes no 3 3.6418E-05 61.641 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1.2888 1.156 15.1 8 Median 1.1326 1.1358 33.817 2 0 Median 1.3102 1.1208 NaN 1 0 Median 1.1258 1.1458 13.185 2 0 Median 1.3617 1.1924 11.57 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12205000 5340400 6864300 3113000 1364100 1748900 1337700 455960 881750 2117400 1033500 1084000 5636600 2486900 3149700 0 0 0 0 0 0 31914 3327 33552 166924;166925;166926;166927;166928;166929;166930;166931 168106;168107;168108;168109;168110;168111;168112;168113;168114;168115;168116 168113 11 STSTQGLEHDLDDVNAR DVNWLGQGLIQSAAKSTSTQGLEHDLDDVN STQGLEHDLDDVNARWKTLNKKVAQRAAQL K S T A R W 1 1 1 3 0 1 1 1 1 0 2 0 0 0 0 2 2 0 0 1 0 0 17 0 1856.85 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3270 3286 DST Dystonin yes no 3 2.6262E-08 76.85 By MS/MS By matching By MS/MS 1 1 1 0.71133 0.57987 30.744 3 Median 0.47076 0.46002 NaN 1 1 Median 0.71133 0.57987 NaN 1 0 Median 0.79711 0.84586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30270000 17952000 12318000 13438000 8391100 5047000 9426100 5418900 4007100 7405800 4141900 3263900 0 0 0 0 0 0 0 0 0 31915 934 33553 166932;166933;166934 168117;168118 168117 1 STSVPQGHTWTQR ______________________________ ______________________________ M S T Q R V 0 1 0 0 0 2 0 1 1 0 0 0 0 0 1 2 3 1 0 1 0 0 13 0 1483.7168 Q9NYJ1 Q9NYJ1 2 14 COA4 Cytochrome c oxidase assembly factor 4 homolog, mitochondrial yes yes 2 4.5731E-05 89.548 By MS/MS By MS/MS 1 1 1.1284 1.0255 9.1158 2 Median 0.98834 0.96149 NaN 1 0 Median 1.2884 1.0938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15251000 6961100 8290400 8404200 4427700 3976500 6847300 2533400 4313900 0 0 0 0 0 0 0 0 0 0 0 0 31916 4177 33554 166935;166936 168119;168120;168121;168122 168121 4 STSYGYSR SHEGETSYIRVYPERSTSYGYSRSRSGSRG IRVYPERSTSYGYSRSRSGSRGRDSPYQSR R S T S R S 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 2 0 0 0 8 0 919.40356 Q13242 Q13242 187 194 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.013762 52.403 By MS/MS By MS/MS 1 1 1.2153 1.0829 4.5283 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0705 1.0487 NaN 1 0 Median 1.3796 1.1181 NaN 1 0 Median 2211200 961140 1250100 0 0 0 0 0 0 0 0 0 0 0 0 1609300 741640 867680 601920 219500 382420 31917 2799 33555 166937;166938 168123;168124 168123 2 STTLDAGNIK TTFEDFVAIISSTKRSTTLDAGNIKLAFNS SSTKRSTTLDAGNIKLAFNSLLEKAEARER R S T I K L 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1018.5295 O75400;A0A3F2YNY6 O75400 709 718 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.003682 69.423 By MS/MS By matching By MS/MS 1 2 1 1.1669 0.9918 11.735 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88 0.93494 NaN 1 0 Median 1.2035 1.0406 17.897 2 0 Median NaN NaN NaN 0 0 Median 1.2727 1.0521 NaN 1 1 Median 7007700 3300200 3707600 0 0 0 0 0 0 1987400 1043300 944090 3586000 1578000 2008100 0 0 0 1434300 678870 755400 31918 1670 33556 166939;166940;166941;166942 168125;168126 168126 2 STTLFSR MPQDSVPSPRSLQGKSTTLFSRHTKAIVWG SPRSLQGKSTTLFSRHTKAIVWGMQTRAVQ K S T S R H 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 2 2 0 0 0 0 0 7 0 810.42357 P53396 P53396 489 495 ACLY ATP-citrate synthase yes yes 2 0.017411 65.803 By MS/MS By MS/MS 1 1 1.5287 1.3866 11.779 2 Median 1.5282 1.5071 NaN 1 0 Median 1.5292 1.2758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15598000 6034300 9563800 2177700 977800 1199900 13420000 5056500 8363900 0 0 0 0 0 0 0 0 0 0 0 0 31919 2467 33557 166943;166944 168127;168128;168129 168129 3 STTPGGTGIKPFLER ELSREICLQSQSKDKSTTPGGTGIKPFLER STTPGGTGIKPFLERFGERCQEHSKESPAR K S T E R F 0 1 0 0 0 0 1 3 0 1 1 1 0 1 2 1 3 0 0 0 0 0 15 1 1559.8308 Q9NQW6 Q9NQW6 362 376 ANLN Actin-binding protein anillin yes yes 2;3 9.4652E-05 68.257 By MS/MS By MS/MS 3 1 0.68626 0.77761 15.466 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70783 0.802 9.3466 3 2 Median 0.65059 0.62523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26741000 15014000 11726000 0 0 0 0 0 0 23587000 13201000 10386000 3153600 1813000 1340600 0 0 0 0 0 0 31920 4069 33558 166945;166946;166947;166948 168130;168131;168132;168133 168130 4 STTSDIPHMLNQVESK YQEVQAMFDTLGIPKSTTSDIPHMLNQVES TTSDIPHMLNQVESKVKDILSKVQKNHVGK K S T S K V 0 0 1 1 0 1 1 0 1 1 1 1 1 0 1 3 2 0 0 1 0 0 16 0 1785.8567 Q52LJ0;H0YNA1 Q52LJ0 162 177 FAM98B Protein FAM98B yes no 2;3 5.7363E-07 86.641 By MS/MS By matching By MS/MS By MS/MS 2 1 3 4 1.001 0.90428 7.0728 10 Median 1.0371 0.96921 7.6947 2 0 Median 0.97429 0.87404 NaN 1 0 Median 0.88953 0.87516 3.0741 3 0 Median 1.0305 0.92401 8.2235 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100910000 53260000 47647000 16394000 8294400 8099500 373820 146370 227460 47820000 26182000 21638000 36320000 18637000 17682000 0 0 0 0 0 0 31921 3025 33559;33560 166949;166950;166951;166952;166953;166954;166955;166956;166957;166958 168134;168135;168136;168137;168138;168139;168140;168141;168142;168143;168144;168145;168146;168147 168138 1654 14 STTSTIESFAAQEK MKLVEQLKEERELLRSTTSTIESFAAQEKQ RSTTSTIESFAAQEKQMEVCEVCGAFLIVG R S T E K Q 2 0 0 0 0 1 2 0 0 1 0 1 0 1 0 3 3 0 0 0 0 0 14 0 1498.7151 J3KPP4;O95232 J3KPP4 174 187 LUC7L3 Luc7-like protein 3 yes no 2;3 6.9668E-08 158.05 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 4 1 1.1011 1.0501 10.254 12 Median 0.9524 0.90198 7.2462 2 0 Median 0.89168 0.9137 NaN 1 0 Median 1.1256 1.0911 4.3393 3 0 Median 1.347 1.16 12.997 2 0 Median 1.089 1.0603 1.8912 3 1 Median 1.1734 0.99285 NaN 1 0 Median 202150000 94664000 107490000 12103000 5192400 6910400 748420 356730 391690 114550000 52264000 62287000 8821400 3996900 4824500 64819000 32403000 32416000 1107600 451120 656520 31922 1309 33561 166959;166960;166961;166962;166963;166964;166965;166966;166967;166968;166969;166970;166971 168148;168149;168150;168151;168152;168153;168154;168155;168156;168157;168158;168159;168160;168161 168148 14 STTTGHLIYK THINIVVIGHVDSGKSTTTGHLIYKCGGID VDSGKSTTTGHLIYKCGGIDKRTIEKFEKE K S T Y K C 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 3 0 1 0 0 0 10 0 1119.5924 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 21 30 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 4.2869E-05 138.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 12 8 10 4 7 1.169 0.99839 20.849 49 Median 1.206 1.1266 5.2005 8 0 Median 1.0835 0.91945 4.9047 12 1 Median 1.2357 1.1921 12.636 8 0 Median 1.1311 0.9662 3.7569 10 1 Median 1.714 1.7731 23.45 4 0 Median 1.2282 1.0172 6.0992 7 0 Median 1431400000 663860000 767580000 180100000 79589000 100510000 453260000 214700000 238570000 268740000 119820000 148920000 445550000 211860000 233700000 21589000 8315000 13274000 62194000 29578000 32616000 31923 2632;404 33562 166972;166973;166974;166975;166976;166977;166978;166979;166980;166981;166982;166983;166984;166985;166986;166987;166988;166989;166990;166991;166992;166993;166994;166995;166996;166997;166998;166999;167000;167001;167002;167003;167004;167005;167006;167007;167008;167009;167010;167011;167012;167013;167014;167015;167016;167017;167018;167019;167020 168162;168163;168164;168165;168166;168167;168168;168169;168170;168171;168172;168173;168174;168175;168176;168177;168178;168179;168180;168181;168182;168183;168184;168185;168186;168187;168188;168189;168190;168191;168192;168193;168194;168195;168196;168197;168198;168199;168200;168201;168202;168203;168204;168205;168206;168207;168208;168209;168210;168211;168212;168213;168214;168215;168216;168217;168218;168219;168220;168221;168222;168223;168224;168225;168226;168227;168228;168229;168230;168231;168232;168233;168234;168235;168236;168237;168238 168219 77 STTYSLESPKDPVLPAR LYTVCDVAMNIIMSKSTTYSLESPKDPVLP TYSLESPKDPVLPARFFTQPDKNFSNTKNY K S T A R F 1 1 0 1 0 0 1 0 0 0 2 1 0 0 3 3 2 0 1 1 0 0 17 1 1859.9629 Q9NTI5;A9IYQ1 Q9NTI5 1080 1096 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2;3 1.121E-11 150.69 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.53252 0.58778 81.433 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53987 0.61237 1.9795 2 0 Median 3.4515 3.3321 NaN 1 1 Median 0.46899 0.53162 14.2 2 0 Median 0.38396 0.34343 62.357 2 0 Median 79449000 48852000 30597000 0 0 0 0 0 0 54993000 35251000 19742000 6622100 1710400 4911700 16954000 11196000 5757400 879970 693970 186000 31924 4107 33563 167021;167022;167023;167024;167025;167026;167027 168239;168240;168241;168242;168243;168244;168245;168246 168241 8 STVAESVSQQILR RDHLRVNLKFLTRTRSTVAESVSQQILRQN TRSTVAESVSQQILRQNRGRKACDRPVAKT R S T L R Q 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 2 0 0 13 0 1416.7573 Q86WX3 Q86WX3 84 96 RPS19BP1 Active regulator of SIRT1 yes yes 2 4.4454E-07 121.5 By matching By MS/MS By matching By MS/MS 1 2 1 2 1.1051 1.1109 19.319 6 Median NaN NaN NaN 0 0 Median 1.0489 0.88743 NaN 1 0 Median 0.92784 0.91547 27.11 2 0 Median 1.41 1.1129 NaN 1 0 Median 1.163 1.2051 8.8546 2 1 Median NaN NaN NaN 0 0 Median 31640000 13846000 17793000 0 0 0 1620400 794120 826260 19246000 8925500 10321000 866350 363510 502840 9907000 3763400 6143500 0 0 0 31925 3297 33564 167028;167029;167030;167031;167032;167033 168247;168248;168249 168248 3 STVALTAAR AVLKFIEGISEKTLRSTVALTAARGRGKSA SEKTLRSTVALTAARGRGKSAALGLAIAGA R S T A R G 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 9 0 888.50288 Q9H0A0;A0A087WV29 Q9H0A0 278 286 NAT10 N-acetyltransferase 10 yes no 2 0.00081314 96.492 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.195 1.0855 10.264 6 Median NaN NaN NaN 0 0 Median 1.2277 1.0382 NaN 1 0 Median 1.0279 1.1141 3.28 2 0 Median 1.1632 0.99075 NaN 1 0 Median 1.2508 1.3333 NaN 1 0 Median 1.3297 1.0825 NaN 1 0 Median 13298000 6058100 7239500 0 0 0 4475700 2154100 2321600 4016200 1879900 2136400 1818200 768810 1049300 1610800 684950 925800 1376700 570380 806280 31926 3921 33565 167034;167035;167036;167037;167038;167039 168250;168251;168252;168253;168254 168251 5 STVAQLVK KKKLYCIYVAIGQKRSTVAQLVKRLTDADA VAIGQKRSTVAQLVKRLTDADAMKYTIVVS R S T V K R 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 8 0 844.50182 P25705;K7ENJ4 P25705 254 261 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.0070981 68.485 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 1 1.3974 1.3014 21.119 7 Median 1.1011 1.018 NaN 1 0 Median 1.4599 1.2398 6.8637 2 0 Median 1.1852 1.2191 22.679 2 0 Median 1.6768 1.4467 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2333 1.8578 NaN 1 0 Median 56222000 24032000 32190000 16967000 7929400 9037400 33130000 13764000 19366000 2531300 1113200 1418100 1140500 495160 645300 0 0 0 2453300 730810 1722500 31927 2135 33566 167040;167041;167042;167043;167044;167045;167046 168255;168256;168257;168258;168259;168260 168258 6 STVASMMHR ITASEALKHPWICQRSTVASMMHRQETVDC PWICQRSTVASMMHRQETVDCLKKFNARRK R S T H R Q 1 1 0 0 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 9 0 1018.4688 Q13557;E9PF82;E9PBG7;D6R938;Q13554;Q13555;Q5SWX3;A0A2Q3DQE3;Q8WU40;H7BXS4;H0Y9C2;H7BZC6;H0Y6G2 Q13557 276 284 CAMK2D;CAMK2B;CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit gamma yes no 2 0.0545 43.808 By MS/MS 1 0.67189 0.65794 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67189 0.65794 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 788190 415510 372680 0 0 0 0 0 0 788190 415510 372680 0 0 0 0 0 0 0 0 0 31928 799 33567 167047 168261 168261 1 STVDAPTAAGR ACLIVSVDETIKNPRSTVDAPTAAGRGRGR KNPRSTVDAPTAAGRGRGRGRPH_______ R S T G R G 3 1 0 1 0 0 0 1 0 0 0 0 0 0 1 1 2 0 0 1 0 0 11 0 1044.52 Q99832 Q99832 525 535 CCT7 T-complex protein 1 subunit eta yes yes 2 0.0019387 56.258 By matching By MS/MS By matching 1 2 1 0.93966 0.85651 17.24 4 Median 0.79567 0.80504 NaN 1 0 Median 0.93966 0.81647 15.534 2 0 Median 1.0679 1.0906 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4020300 2078600 1941700 784140 407430 376710 2534900 1391100 1143800 701250 280020 421230 0 0 0 0 0 0 0 0 0 31929 3771 33568 167048;167049;167050;167051 168262;168263 168262 2 STVDGLQVTQLNVDHTTENEDELFR LYVANVGTNRALLCKSTVDGLQVTQLNVDH LNVDHTTENEDELFRLSQLGLDAGKIKQVG K S T F R L 0 1 2 3 0 2 3 1 1 0 3 0 0 1 0 1 4 0 0 3 0 0 25 0 2859.3523 Q15750 Q15750 193 217 TAB1 TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 yes yes 3 0.0099136 18.095 By MS/MS 1 0.83821 0.82222 NaN 1 Median 0.83821 0.82222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036400 1941800 2094600 4036400 1941800 2094600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31930 2967 33569 167052 168264 168264 1 STVEGIQASVK GATAEKAAAVGTANKSTVEGIQASVKTARE TANKSTVEGIQASVKTARELTPQVVSAARI K S T V K T 1 0 0 0 0 1 1 1 0 1 0 1 0 0 0 2 1 0 0 2 0 0 11 0 1117.5979 P18206 P18206 656 666 VCL Vinculin yes yes 2 0.00030947 111.46 By MS/MS By MS/MS 1 2 1.0301 0.86181 19.876 3 Median 1.2537 1.209 NaN 1 0 Median 1.0244 0.85702 0.78865 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173310000 83732000 89583000 19328000 8666100 10662000 153990000 75065000 78920000 0 0 0 0 0 0 0 0 0 0 0 0 31931 2057 33570 167053;167054;167055 168265;168266;168267 168266 3 STVHEILCK ______________________________ ______________________________ M S T C K L 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 1085.5539 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 2 10 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.00058517 113.26 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.2229 1.1073 10.944 7 Median 1.1877 1.1011 4.2549 2 2 Median 1.2134 1.024 0.24416 2 0 Median 1.2258 1.1803 NaN 1 0 Median 1.2996 1.1073 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.361 1.4036 NaN 1 0 Median 129030000 57587000 71443000 20191000 8841100 11350000 82090000 36688000 45402000 15704000 7440400 8263700 10676000 4459600 6216100 0 0 0 369910 157640 212260 31932 1885 33571 167056;167057;167058;167059;167060;167061;167062 168268;168269;168270;168271;168272;168273;168274;168275 168271 8 STVLQQQYNR DEESTMLEDSVSPKKSTVLQQQYNRVGKVE VSPKKSTVLQQQYNRVGKVEHGSVALPAIM K S T N R V 0 1 1 0 0 3 0 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 10 0 1235.6258 Q9Y490 Q9Y490 429 438 TLN1 Talin-1 yes yes 2 0.0041692 54.157 By MS/MS By matching By matching 1 2 1 1.0688 0.91424 11.81 4 Median 0.92959 0.93316 NaN 1 0 Median 1.0688 0.8947 0.15951 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.091 1.1452 NaN 1 0 Median NaN NaN NaN 0 0 Median 10283000 5112400 5170800 1775000 812460 962590 6043500 3083000 2960500 0 0 0 0 0 0 2464600 1217000 1247700 0 0 0 31933 4441 33572 167063;167064;167065;167066 168276;168277 168276 2 STVLSLLLR SGSVTALVGPSGSGKSTVLSLLLRLYDPAS PSGSGKSTVLSLLLRLYDPASGTISLDGHD K S T L R L 0 1 0 0 0 0 0 0 0 0 4 0 0 0 0 2 1 0 0 1 0 0 9 0 1000.6281 Q9NRK6 Q9NRK6 534 542 ABCB10 ATP-binding cassette sub-family B member 10, mitochondrial yes yes 2 0.010786 63.565 By MS/MS 1 0.1786 0.1757 NaN 1 Median 0.1786 0.1757 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9037800 7879900 1157900 9037800 7879900 1157900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31934 4083 33573 167067 168278 168278 1 STVLTPMFVETQASQGTLQTR CEFQEYTIDSDWRFRSTVLTPMFVETQASQ MFVETQASQGTLQTRTQEGSLSARWPVAGQ R S T T R T 1 1 0 0 0 3 1 1 0 0 2 0 1 1 1 2 5 0 0 2 0 0 21 0 2294.1576 P78527 P78527 2599 2619 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.6383E-46 194.19 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 3 10 6 4 0.93386 0.93931 18.461 28 Median 0.87373 0.8265 8.1504 5 0 Median 1.5768 1.3355 16.177 3 0 Median 0.79023 0.84022 13.022 10 2 Median 1.2384 1.0744 7.0624 6 0 Median 0.94377 0.94264 19.595 4 0 Median NaN NaN NaN 0 0 Median 346620000 184320000 162300000 143620000 75232000 68389000 5649500 2329900 3319600 175580000 95269000 80310000 1741100 767280 973830 20030000 10724000 9306500 0 0 0 31935 2647 33574;33575 167068;167069;167070;167071;167072;167073;167074;167075;167076;167077;167078;167079;167080;167081;167082;167083;167084;167085;167086;167087;167088;167089;167090;167091;167092;167093;167094;167095 168279;168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290;168291;168292;168293;168294;168295;168296;168297;168298;168299;168300;168301;168302;168303;168304;168305;168306;168307;168308;168309;168310;168311;168312;168313 168290 1337 35 STVPTDFSSAK FKGRDIYTFDGALNKSTVPTDFSSAKIEVS ALNKSTVPTDFSSAKIEVSQLLKGDASLKM K S T A K I 1 0 0 1 0 0 0 0 0 0 0 1 0 1 1 3 2 0 0 1 0 0 11 0 1138.5506 A0A2R8Y484;Q08722 A0A2R8Y484 30 40 CD47 Leukocyte surface antigen CD47 yes no 2 0.00041805 70.1 By MS/MS By MS/MS 1 2 0.97761 0.86976 17.932 3 Median 0.64942 0.64493 NaN 1 0 Median 0.99177 0.87933 1.5485 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22414000 11032000 11382000 4471900 2932000 1539900 17942000 8099900 9842000 0 0 0 0 0 0 0 0 0 0 0 0 31936 362 33576 167096;167097;167098 168314;168315;168316;168317;168318 168316 5 STVTLSWKPVQK NVLIKDLFHIPPSYKSTVTLSWKPVQKVEI SYKSTVTLSWKPVQKVEIGQKRASEDTTSG K S T Q K V 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 2 2 1 0 2 0 0 12 1 1372.7715 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 437 448 API5 Apoptosis inhibitor 5 yes no 2;3 1.7865E-05 126.07 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 6 2 3 1.0526 0.98531 24.3 21 Median 1.1389 1.062 4.4685 3 0 Plateau 1.0338 0.97189 3.9389 4 0 Median 0.91891 0.95398 14.109 3 0 Median 1.0345 1.0007 29.22 6 1 Median 1.6048 1.7126 13.423 2 0 Median 1.0595 0.9195 17.386 3 0 Median 233970000 112650000 121320000 32532000 14900000 17632000 8975500 4512400 4463100 122170000 61022000 61151000 39462000 19422000 20040000 16275000 5954900 10320000 14551000 6839700 7711100 31937 1103 33577 167099;167100;167101;167102;167103;167104;167105;167106;167107;167108;167109;167110;167111;167112;167113;167114;167115;167116;167117;167118;167119 168319;168320;168321;168322;168323;168324;168325;168326;168327;168328;168329;168330;168331;168332;168333;168334;168335;168336 168331 18 STVVKAISGVHTVR ATINIGTIGHVAHGKSTVVKAISGVHTVRF KSTVVKAISGVHTVRFKNELERNITIKLGY K S T V R F 1 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 2 0 0 4 0 0 14 1 1452.8413 P41091;Q2VIR3;H7BZU1 P41091 55 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.0089945 39.746 By MS/MS 1 0.80721 0.75747 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80721 0.75747 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1332800 739830 592950 0 0 0 0 0 0 0 0 0 1332800 739830 592950 0 0 0 0 0 0 31938 2295 33578 167120 168337 168337 1 STVVPVPYEK VEDYFCFCYGKALGKSTVVPVPYEKMLRDQ KALGKSTVVPVPYEKMLRDQSAVVVQGLPE K S T E K M 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 1 1 0 1 3 0 0 10 0 1117.6019 P78347;A0A494C1K3 P78347 131 140 GTF2I General transcription factor II-I yes no 2 0.00041856 75.378 By MS/MS By MS/MS 2 1 0.89869 0.75789 77.332 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0956 1.2142 102.37 2 0 Median 0.89869 0.75789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52701000 29906000 22795000 0 0 0 0 0 0 51606000 29319000 22288000 1094300 587370 506980 0 0 0 0 0 0 31939 2642 33579 167121;167122;167123 168338;168339;168340 168338 3 STWLILHHK KYYTLEEIQKHNHSKSTWLILHHKVYDLTK KHNHSKSTWLILHHKVYDLTKFLEEHPGGE K S T H K V 0 0 0 0 0 0 0 0 2 1 2 1 0 0 0 1 1 1 0 0 0 0 9 0 1133.6346 P00167 P00167 25 33 CYB5A Cytochrome b5 yes yes 2 0.0032979 66.073 By MS/MS By matching 1 1 1.3188 1.1631 10.124 2 Median 1.3232 1.2494 NaN 1 0 Median 1.3144 1.0828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20245000 8397200 11848000 11072000 4462500 6609100 9173600 3934700 5238900 0 0 0 0 0 0 0 0 0 0 0 0 31940 1812 33580 167124;167125 168341;168342 168342 2 STYEQVDLIGKK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK YMKSTYEQVDLIGKKTQKTAITVEHLAIKC K S T K K T 0 0 0 1 0 1 1 1 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1379.7296 Q9NR30 Q9NR30 392 403 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.00017069 90.108 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1.3676 1.4688 51.957 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.771 2.0186 16.592 3 2 Median 1.2551 1.2261 75.15 3 1 Median 1.2484 1.398 16.412 2 0 Median 1.393 1.2574 56.742 2 0 Median 118410000 46947000 71467000 0 0 0 0 0 0 90801000 35341000 55461000 4634300 2279600 2354700 18954000 7657800 11296000 4024600 1668800 2355800 31941 4076 33581 167126;167127;167128;167129;167130;167131;167132;167133;167134;167135;167136 168343;168344;168345;168346;168347;168348;168349;168350;168351;168352;168353;168354;168355 168343 13 STYNHLSSWLTDAR RGAAGALMVYDITRRSTYNHLSSWLTDARN RSTYNHLSSWLTDARNLTNPNTVIILIGNK R S T A R N 1 1 1 1 0 0 0 0 1 0 2 0 0 0 0 3 2 1 1 0 0 0 14 0 1649.7798 P61106;X6RFL8 P61106 97 110 RAB14 Ras-related protein Rab-14 yes no 3 9.986E-05 72.175 By MS/MS By MS/MS By matching By matching By matching By matching 3 2 1 1 1 1 1.2003 1.0308 23.919 9 Median 1.0814 1.0294 26.264 3 0 Median 1.2394 1.0455 4.2036 2 0 Median 0.95348 0.91282 NaN 1 0 Median 1.2767 1.0369 NaN 1 0 Median 1.8127 1.753 NaN 1 0 Median 1.2427 1.0308 NaN 1 0 Median 108570000 50236000 58334000 97456000 44847000 52609000 5994700 2670800 3323900 4311700 2401000 1910600 133630 55869 77759 543290 201910 341380 130490 58959 71532 31942 2545 33582 167137;167138;167139;167140;167141;167142;167143;167144;167145 168356;168357;168358;168359 168357 4 STYNYSLPITVK KHGYAPSDLPVKAKRSTYNYSLPITVKKTS AKRSTYNYSLPITVKKTSSQLVTMHDLKQG R S T V K K 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 2 2 0 2 1 0 0 12 0 1384.7238 Q9Y5Q8;Q5T7U1;H7BY84;H0Y5D2 Q9Y5Q8 343 354 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2 0.00082411 60.434 By matching By matching By MS/MS By matching By matching 1 1 1 2 1 0.89641 0.82338 99.907 6 Median 1.0223 0.98767 NaN 1 0 Median 1.0179 0.89091 NaN 1 0 Median 0.78484 0.76097 NaN 1 0 Median 2.6796 2.4254 176.89 2 0 Median 0.59285 0.57135 NaN 1 0 Median NaN NaN NaN 0 0 Median 22175000 11713000 10463000 2048100 951020 1097100 901680 527010 374670 17347000 9543900 7802600 767950 156060 611890 1110900 534680 576260 0 0 0 31943 4466 33583 167146;167147;167148;167149;167150;167151 168360;168361 168360 2 STYPPSGPTYR AVAQHAPPWTEDCRKSTYPPSGPTYRGAVP DCRKSTYPPSGPTYRGAVPWYTINLDLPPY K S T Y R G 0 1 0 0 0 0 0 1 0 0 0 0 0 0 3 2 2 0 2 0 0 0 11 0 1224.5775 Q13510;A0A1B0GTP7;A0A1B0GUH5;A0A1B0GTZ5;A0A1B0GTM3;A0A1B0GUA4;A0A1B0GW68;E7EMM4;A0A1B0GUG1;A0A1B0GVG2;A0A1B0GUB3;A0A1B0GU06;A0A1B0GU62;A0A1B0GVJ1;A0A1B0GW48;A0A1B0GV95;A0A1B0GVC9;A0A1B0GV88 Q13510 34 44 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 2 0.0021541 55.064 By MS/MS By MS/MS By matching 3 2 1 0.93947 0.85172 20.194 6 Median 1.1528 1.0695 29.178 3 0 Plateau 1.0038 0.85172 6.5802 2 0 Median 0.91985 0.96302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42398000 20266000 22132000 23175000 11607000 11567000 12439000 5836900 6602200 6783900 2821800 3962100 0 0 0 0 0 0 0 0 0 31944 319 33584 167152;167153;167154;167155;167156;167157 168362;168363;168364;168365;168366 168363 5 STYVTEVR REHLEMELEKAEMERSTYVTEVRELKDLLT EKAEMERSTYVTEVRELKDLLTELQKKLDD R S T V R E 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 1 2 0 0 8 0 953.48181 Q86UP2;G3V4Y7;B7Z6P3;H0YJP2 Q86UP2 1221 1228 KTN1 Kinectin yes no 2 0.0035134 91.626 By MS/MS By matching 2 1 1.3961 1.1749 36.114 3 Median NaN NaN NaN 0 0 Median 1.1876 0.99498 23.505 2 0 Median 1.5952 1.7338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9162100 3971200 5190900 0 0 0 7609300 3338100 4271200 1552700 633090 919650 0 0 0 0 0 0 0 0 0 31945 3280 33585 167158;167159;167160 168367 168367 1 SVAADFIQQGIR CVYSTTKAAVIGLTKSVAADFIQQGIRCNC LTKSVAADFIQQGIRCNCVCPGTVDTPSLQ K S V I R C 2 1 0 1 0 2 0 1 0 2 0 0 0 1 0 1 0 0 0 1 0 0 12 0 1303.6884 Q9BUT1;D6R9P2 Q9BUT1 160 171 BDH2;SLC9B2 3-hydroxybutyrate dehydrogenase type 2 yes no 2 4.9695E-06 118.18 By MS/MS By MS/MS By MS/MS By matching 2 3 2 1 0.85881 0.77745 135.47 8 Median 0.8625 0.84145 22.037 2 0 Median 0.64505 0.55221 154.11 3 0 Median 2.4765 2.6444 192.34 2 0 Median 1.0247 0.83945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82889000 37037000 45853000 63659000 30588000 33070000 5316000 2702900 2613200 13564000 3565100 9999000 350710 180400 170310 0 0 0 0 0 0 31946 3843 33586 167161;167162;167163;167164;167165;167166;167167;167168 168368;168369;168370;168371;168372;168373 168369 6 SVAAFTADPLSLLR VSLIPLRGSENEMRRSVAAFTADPLSLLRN RSVAAFTADPLSLLRNV_____________ R S V L R N 3 1 0 1 0 0 0 0 0 0 3 0 0 1 1 2 1 0 0 1 0 0 14 0 1459.8035 E7EU13;Q96P48;A0A0A0MSJ2 E7EU13 1179 1192 ARAP1 Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 yes no 2 0.0014841 62.408 By MS/MS By MS/MS 1 1 0.91831 0.84061 9.1308 2 Median 0.7917 0.78805 NaN 1 1 Median 1.0652 0.89668 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4390600 2004000 2386600 2385200 1317300 1067900 2005400 686710 1318700 0 0 0 0 0 0 0 0 0 0 0 0 31947 893 33587 167169;167170 168374;168375 168375 2 SVAAIHPSLEIPMLIPK ESDLVDGRHSPPMVRSVAAIHPSLEIPMLI AAIHPSLEIPMLIPKEKPPITVVGDVGGRI R S V P K E 2 0 0 0 0 0 1 0 1 3 2 1 1 0 3 2 0 0 0 1 0 0 17 0 1815.0328 O60256;E7EPA1;I3L4G9 O60256 233 249 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 0.011645 37.681 By MS/MS By matching 1 1 0.7182 0.66083 18.672 2 Median 0.60393 0.5791 NaN 1 0 Median 0.85409 0.75411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2357800 1468100 889690 1740700 1127000 613620 617090 341030 276070 0 0 0 0 0 0 0 0 0 0 0 0 31948 1607 33588 167171;167172 168376 168376 0 SVAEGLSGSLVQEPFQLATEK TVISQEPFVPKKEKKSVAEGLSGSLVQEPF SGSLVQEPFQLATEKRAKERQELEKRMAEV K S V E K R 2 0 0 0 0 2 3 2 0 0 3 1 0 1 1 3 1 0 0 2 0 0 21 0 2189.1216 Q9ULW0 Q9ULW0 646 666 TPX2 Targeting protein for Xklp2 yes yes 2 0.042955 19.286 By MS/MS By matching 1 1 0.92467 0.98411 4.2416 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86654 0.95503 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9867 1.0141 NaN 1 0 Median NaN NaN NaN 0 0 Median 4697200 2566200 2131000 0 0 0 0 0 0 4140100 2248600 1891500 0 0 0 557080 317540 239540 0 0 0 31949 4330 33589 167173;167174 168377;168378 168378 2 SVAEGLSGSLVQEPFQLATEKR TVISQEPFVPKKEKKSVAEGLSGSLVQEPF GSLVQEPFQLATEKRAKERQELEKRMAEVE K S V K R A 2 1 0 0 0 2 3 2 0 0 3 1 0 1 1 3 1 0 0 2 0 0 22 1 2345.2227 Q9ULW0 Q9ULW0 646 667 TPX2 Targeting protein for Xklp2 yes yes 3 6.6094E-07 40.756 By MS/MS By MS/MS 1 1 0.88193 0.99009 4.4986 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89975 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86447 0.95909 NaN 1 0 Median NaN NaN NaN 0 0 Median 5303300 2533700 2769600 0 0 0 0 0 0 3522900 1712300 1810600 0 0 0 1780400 821430 958970 0 0 0 31950 4330 33590 167175;167176 168379;168380;168381 168380 3 SVAFPPFPSGR TIKNCLSAAEDKKLKSVAFPPFPSGRNCFP KKLKSVAFPPFPSGRNCFPKQTAAQVTLKA K S V G R N 1 1 0 0 0 0 0 1 0 0 0 0 0 2 3 2 0 0 0 1 0 0 11 0 1160.5978 Q9P0M6 Q9P0M6 308 318 H2AFY2 Core histone macro-H2A.2 yes yes 2 0.00014501 102.07 By matching By MS/MS By matching 1 6 4 0.53785 0.56275 39.8 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0728 1.6897 NaN 1 0 Median 0.5253 0.52248 9.1511 6 2 Median 0.95707 0.83285 12.294 4 0 Median 69395000 42840000 26555000 0 0 0 0 0 0 0 0 0 239670 96732 142940 66144000 41281000 24862000 3011900 1462100 1549800 31951 4206 33591 167177;167178;167179;167180;167181;167182;167183;167184;167185;167186;167187 168382;168383;168384;168385;168386;168387;168388;168389;168390;168391;168392;168393;168394;168395;168396 168384 15 SVAGGEIRGDTGGEDTAAPGR ______________________________ IRGDTGGEDTAAPGRFSFSPEPTLEDIRRL M S V G R F 3 2 0 2 0 0 2 6 0 1 0 0 0 0 1 1 2 0 0 1 0 0 21 1 1971.9246 Q9H773 Q9H773 2 22 DCTPP1 dCTP pyrophosphatase 1 yes yes 2;3 1.6406E-25 130.72 By MS/MS By MS/MS By matching 2 2 1 0.92496 1.0083 8.6629 5 Linear 0.94324 0.98868 2.7677 2 0 Median 0.95968 0.87794 5.7485 2 0 Median 0.79565 0.82496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40942000 20469000 20472000 35981000 18174000 17807000 3691600 1681900 2009700 1268700 613510 655230 0 0 0 0 0 0 0 0 0 31952 3979 33592 167188;167189;167190;167191;167192 168397;168398;168399;168400;168401;168402 168400 6 SVAGGFVYTYK YVLVGVAKDLILNPRSVAGGFVYTYKLVNN LNPRSVAGGFVYTYKLVNNGEKLEFLHKTP R S V Y K L 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 1 1 0 2 2 0 0 11 0 1190.5972 Q15393 Q15393 919 929 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00016143 81.338 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 3 4 1 1.1857 1.0913 12.042 16 Median 1.0738 1.058 22.242 2 0 Median 1.2011 1.0687 1.2235 2 0 Median 1.0542 1.1391 15.265 4 1 Median 1.2147 1.0625 10.762 3 0 Median 1.0458 1.0457 11.192 4 1 Median 1.4597 1.2509 NaN 1 0 Median 280550000 135690000 144870000 43768000 21467000 22301000 31372000 14545000 16826000 147430000 71672000 75761000 15415000 6945500 8469100 40820000 20293000 20527000 1744500 762550 981990 31953 2946 33593 167193;167194;167195;167196;167197;167198;167199;167200;167201;167202;167203;167204;167205;167206;167207;167208;167209 168403;168404;168405;168406;168407;168408;168409;168410;168411;168412;168413;168414;168415;168416;168417;168418;168419;168420;168421;168422;168423;168424;168425;168426;168427 168407 25 SVAHLPWR FITMTPQLFINYKLKSVAHLPWRMLTYKAL FINYKLKSVAHLPWRMLTYKALNTFIDDLF K S V W R M 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 1 0 1 0 1 0 0 8 0 964.52428 O96005;K7ERL5 O96005 535 542 CLPTM1 Cleft lip and palate transmembrane protein 1 yes no 2 0.0075328 81.297 By MS/MS 1 0.89798 0.71866 NaN 1 Median NaN NaN NaN 0 0 Median 0.89798 0.71866 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20405000 8711900 11693000 0 0 0 20405000 8711900 11693000 0 0 0 0 0 0 0 0 0 0 0 0 31954 1805 33594 167210 168428 168428 1 SVANPAFLK TPDSFEKHIRSILQRSVANPAFLKASEKDI RSILQRSVANPAFLKASEKDIAPPPEECLQ R S V L K A 2 0 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 9 0 945.52837 Q99567;I3L4K7 Q99567 540 548 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.011758 46.994 By matching By matching By MS/MS By MS/MS 1 1 3 1 1.0973 1.1085 18.321 6 Median 1.2044 1.225 NaN 1 0 Median 1.3229 1.2116 NaN 1 0 Median 1.0156 1.0141 17.251 3 0 Median 0.94309 0.8183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29458000 13213000 16244000 8268600 3480000 4788600 1780800 710580 1070200 17535000 8018600 9516600 1873100 1004200 868900 0 0 0 0 0 0 31955 3753 33595 167211;167212;167213;167214;167215;167216 168429;168430;168431;168432 168430 4 SVAQQASLTEQR AFLDVVSKLRSHENKSVAQQASLTEQRLTV ENKSVAQQASLTEQRLTVES__________ K S V Q R L 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1316.6684 P52306 P52306 591 602 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes yes 2 0.00040467 95.573 By MS/MS 1 0.85647 0.83632 NaN 1 Median 0.85647 0.83632 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4483100 2040400 2442700 4483100 2040400 2442700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31956 2451 33596 167217 168433 168433 1 SVAQYTGGIAK VQPAWGSAEAVDIDRSVAQYTGGIAKLERD DIDRSVAQYTGGIAKLERDMSNVSLGPTPI R S V A K L 2 0 0 0 0 1 0 2 0 1 0 1 0 0 0 1 1 0 1 1 0 0 11 0 1093.5768 Q10713 Q10713 289 299 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.0002796 72.928 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3923 1.2564 12.18 4 Median 1.2288 1.1385 NaN 1 0 Median 1.5776 1.3351 NaN 1 0 Median 1.2095 1.1824 NaN 1 0 Median 1.7354 1.4883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46421000 18967000 27454000 12478000 5832900 6644600 19987000 7556200 12430000 6872500 2942200 3930300 7084100 2635700 4448400 0 0 0 0 0 0 31957 2754 33597 167218;167219;167220;167221 168434;168435;168436;168437;168438;168439;168440;168441 168441 8 SVASGGWQEPENPHTQR GFCRWTSRDVGMADKSVASGGWQEPENPHT ASGGWQEPENPHTQRMNKLIEYYQQLAQKE K S V Q R M 1 1 1 0 0 2 2 2 1 0 0 0 0 0 2 2 1 1 0 1 0 0 17 0 1878.8609 E5RGG1;H9KVE0;Q9UJW0 E5RGG1 70 86 DCTN4 Dynactin subunit 4 yes no 3 5.9856E-06 67.605 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 0.67021 0.6672 17.679 5 Median 0.65201 0.64977 3.7419 2 0 Median 0.94504 0.80532 NaN 1 0 Median 0.47902 0.5046 NaN 1 0 Median 0.85541 0.73457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13888000 8447700 5440400 5990200 3739800 2250400 3695700 2122200 1573600 1752000 1109900 642110 2450200 1475900 974330 0 0 0 0 0 0 31958 838 33598 167222;167223;167224;167225;167226 168442;168443;168444;168445;168446;168447;168448 168446 7 SVASNQSEMEFSSLQDMPK EEEFAGAKLEDSEVRSVASNQSEMEFSSLQ NQSEMEFSSLQDMPKELDPSAVLPLDCLLA R S V P K E 1 0 1 1 0 2 2 0 0 0 1 1 2 1 1 5 0 0 0 1 0 0 19 0 2113.9296 Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163 675 693 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 5.4915E-07 61.375 By MS/MS By matching By MS/MS 1 1 1 0.74152 0.80312 13.008 3 Median 0.82744 0.81763 NaN 1 0 Median 0.70962 0.64722 NaN 1 0 Median 0.74152 0.80312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6863900 3679600 3184300 3311700 1682800 1628900 210230 122650 87581 3342000 1874100 1467800 0 0 0 0 0 0 0 0 0 31959 3354 33599 167227;167228;167229 168449;168450;168451;168452 168452 4 SVASQFFTQEEGPGIDGMTTSER ______________________________ QEEGPGIDGMTTSERVVDLLNQAALITNDS R S V E R V 1 1 0 1 0 2 3 3 0 1 0 0 1 2 1 3 3 0 0 1 0 0 23 0 2473.1067 Q92797;A0A087WUE9;M0R3C7;M0QXP5;M0R1C2;M0R180;M0R039 Q92797 13 35 SYMPK Symplekin yes no 2;3 5.9161E-29 119.31 By MS/MS By matching By matching 2 2 1 0.74759 0.82236 11.444 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7312 0.80411 3.1743 2 0 Median 1.0469 0.9127 2.262 2 0 Median 0.67226 0.69537 NaN 1 0 Median NaN NaN NaN 0 0 Median 22918000 12819000 10098000 0 0 0 0 0 0 21300000 11924000 9375900 733290 384740 348550 884360 510490 373870 0 0 0 31960 3558 33600 167230;167231;167232;167233;167234 168453;168454;168455;168456 168456 4 SVAVYGGGSMWEQAK IHAECKRFGKAYNLRSVAVYGGGSMWEQAK SVAVYGGGSMWEQAKALQEGAEIVVCTPGR R S V A K A 2 0 0 0 0 1 1 3 0 0 0 1 1 0 0 2 0 1 1 2 0 0 15 0 1568.7293 Q86XP3;A0A0A0MSJ0 Q86XP3 357 371 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 2.626E-06 91.961 By matching By MS/MS By MS/MS By matching By matching 1 4 2 1 1 1.0718 1.0552 10.642 9 Median NaN NaN NaN 0 0 Median 1.0718 0.9672 NaN 1 0 Median 0.98037 1.0615 3.7387 4 2 Median 1.1725 0.9964 6.1557 2 0 Median 1.1987 1.2389 NaN 1 0 Median 1.5716 1.3144 NaN 1 0 Median 48401000 24115000 24286000 0 0 0 446550 241020 205530 38460000 19547000 18913000 4372200 1990900 2381300 4781500 2191400 2590100 341230 144690 196530 31961 3302 33601;33602 167235;167236;167237;167238;167239;167240;167241;167242;167243 168457;168458;168459;168460;168461;168462;168463 168459 1707 7 SVCTEAGMFAIR LLARLCPNSTGAEIRSVCTEAGMFAIRARR EIRSVCTEAGMFAIRARRKIATEKDFLEAV R S V I R A 2 1 0 0 1 0 1 1 0 1 0 0 1 1 0 1 1 0 0 1 0 0 12 0 1340.6217 P35998 P35998 387 398 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.029201 28.727 By MS/MS 1 2.1318 1.8446 NaN 1 Median NaN NaN NaN 0 0 Median 2.1318 1.8446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1855900 579990 1275900 0 0 0 1855900 579990 1275900 0 0 0 0 0 0 0 0 0 0 0 0 31962 2253 33603 167244 168464 168464 1 SVDDVLSHFAQR AIEATGAVIHFGNGKSVDDVLSHFAQRLFD NGKSVDDVLSHFAQRLFDDVPQVRRAVASV K S V Q R L 1 1 0 2 0 1 0 0 1 0 1 0 0 1 0 2 0 0 0 2 0 0 12 0 1372.6735 Q86Y56;H0Y650 Q86Y56 242 253 DNAAF5 Dynein assembly factor 5, axonemal yes no 2;3 4.8065E-06 102.06 By MS/MS By matching By matching 2 2 1 1.1761 1.1357 30.288 5 Median 1.0471 1.0229 14.792 2 0 Median 1.1856 1.0617 9.757 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4172 1.9888 NaN 1 0 Median 7831300 3539400 4291900 5955600 2740800 3214800 1777600 768540 1009000 0 0 0 0 0 0 0 0 0 98091 30051 68040 31963 3305 33604 167245;167246;167247;167248;167249 168465;168466;168467 168467 3 SVDEALR GVLRQITVNDLPVGRSVDEALRLVQAFQYT VNDLPVGRSVDEALRLVQAFQYTDEHGEVC R S V L R L 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 7 0 788.40283 P32119 P32119 151 157 PRDX2 Peroxiredoxin-2 yes yes 1;2 0.0040325 79.454 By MS/MS By MS/MS By matching 2 2 1 1.0224 0.96156 12.811 2 Median 0.92742 0.87829 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1271 1.0527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29007000 4737800 24269000 24293000 4327700 19965000 3807700 0 3807700 906540 410080 496460 0 0 0 0 0 0 0 0 0 31964 2215 33605 167250;167251;167252;167253;167254 168468;168469;168470;168471 168468 4 SVDETLR GILRQITVNDLPVGRSVDETLRLVQAFQFT VNDLPVGRSVDETLRLVQAFQFTDKHGEVC R S V L R L 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 7 0 818.4134 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830 152 158 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 2 0.0022261 119.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 5 1 1 2 2 1.3723 1.124 22.064 13 Median 1.4184 1.3729 11.717 2 0 Median 1.3142 1.1119 22.845 5 0 Median 1.5001 1.4412 NaN 1 0 Median 1.2903 1.0675 NaN 1 0 Median 1.6823 1.7037 7.7547 2 0 Median 1.3597 1.0867 3.2856 2 0 Median 137620000 58215000 79405000 91766000 38914000 52852000 29538000 12700000 16837000 12709000 5150500 7558500 1689400 714030 975410 1189100 430210 758910 727870 305540 422330 31965 2728;2793 33606 167255;167256;167257;167258;167259;167260;167261;167262;167263;167264;167265;167266;167267 168472;168473;168474;168475;168476;168477;168478;168479;168480;168481;168482;168483;168484 168473 13 SVDETTQAMAFDGIIFQGQSLK VQINQDKNFAFLEFRSVDETTQAMAFDGII AMAFDGIIFQGQSLKIRRPHDYQPLPGMSE R S V L K I 2 0 0 2 0 3 1 2 0 2 1 1 1 2 0 2 2 0 0 1 0 0 22 0 2385.1522 P26368;K7ENG2 P26368 204 225 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 2;3 7.2499E-18 107.35 By matching By MS/MS By MS/MS By MS/MS 2 8 3 7 1.0436 1.0065 12.241 20 Median 1.05 1.0157 0.31765 2 0 Median NaN NaN NaN 0 0 Median 1.0526 1.0515 14.106 8 1 Median 1.1897 1.0273 4.3571 3 0 Median 0.96251 0.97939 8.591 7 0 Median NaN NaN NaN 0 0 Median 85207000 40199000 45008000 1067400 475580 591830 0 0 0 68781000 32141000 36640000 3844000 1840000 2004000 11514000 5741900 5771900 0 0 0 31966 2143 33607;33608 167268;167269;167270;167271;167272;167273;167274;167275;167276;167277;167278;167279;167280;167281;167282;167283;167284;167285;167286;167287 168485;168486;168487;168488;168489;168490;168491;168492;168493;168494;168495;168496;168497;168498;168499;168500 168485 907 16 SVDEVNYWDKQDHPISR RIGHHSTSDDSSAYRSVDEVNYWDKQDHPI DEVNYWDKQDHPISRLRHYLLSQGWWDEEQ R S V S R L 0 1 1 3 0 1 1 0 1 1 0 1 0 0 1 2 0 1 1 2 0 0 17 1 2086.9708 F5H5P2;P12694 F5H5P2 381 397 BCKDHA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 3 6.9242E-06 65.949 By MS/MS 1 0.89435 0.85749 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89435 0.85749 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4955700 2365000 2590600 0 0 0 0 0 0 0 0 0 4955700 2365000 2590600 0 0 0 0 0 0 31967 1037 33609 167288 168501 168501 1 SVDFDSLTVR SKLKLDSEQLPLRPKSVDFDSLTVRTSKET PLRPKSVDFDSLTVRTSKETDVVNFDDIAS K S V V R T 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 2 1 0 0 2 0 0 10 0 1137.5666 Q9Y5K6 Q9Y5K6 458 467 CD2AP CD2-associated protein yes yes 2 0.0035742 56.258 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.1676 1.0674 38.169 6 Median 1.7757 1.7171 62.32 2 0 Median 1.1749 1.0293 NaN 1 0 Median 1.0356 1.0134 2.437 2 0 Median 1.2701 1.1124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20311000 9944200 10367000 7999000 3642800 4356100 1625000 877390 747650 10384000 5277100 5106500 303150 146910 156240 0 0 0 0 0 0 31968 4460 33610 167289;167290;167291;167292;167293;167294 168502;168503;168504 168503 3 SVDFLLDSSLRK LGLLTIPIIIHPIDRSVDFLLDSSLRKLYP IDRSVDFLLDSSLRKLYPTVGKPSSS____ R S V R K L 0 1 0 2 0 0 0 0 0 0 3 1 0 1 0 3 0 0 0 1 0 0 12 1 1378.7456 B5MC22;Q9UDX5;H7C417 B5MC22 121 132 MTFP1 Mitochondrial fission process protein 1 yes no 2 0.00090533 63.283 By MS/MS By matching 1 1 0.9221 0.86185 36.482 2 Median 0.67178 0.66588 NaN 1 0 Median 1.2657 1.1155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2551000 1427000 1124000 2262400 1300400 962030 288600 126640 161960 0 0 0 0 0 0 0 0 0 0 0 0 31969 617 33611 167295;167296 168505 168505 1 SVDGPIRLPIVDKYK LPFIPYLDNLPNFNRSVDGPIRLPIVDKYK SVDGPIRLPIVDKYKDMGTVVLGKLESGSI R S V Y K D 0 1 0 2 0 0 0 1 0 2 1 2 0 0 2 1 0 0 1 2 0 0 15 2 1698.9669 P15170;H3BR35 P15170 297 311 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 3 0.015449 23.481 By MS/MS 2 0.70318 0.76985 9.9617 2 Median 0.70318 0.76985 9.9617 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10014000 6314800 3699200 10014000 6314800 3699200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31970 2016 33612 167297;167298 168506 168506 1 SVDNRPQAPLVSASAVNEEVSK ISQKSVDIHDSIQPRSVDNRPQAPLVSASA APLVSASAVNEEVSKIKSTAKFPEQKLFAA R S V S K I 3 1 2 1 0 1 2 0 0 0 1 1 0 0 2 4 0 0 0 4 0 0 22 1 2296.1659 Q9Y6D6;E5RIF2;E5RHL7 Q9Y6D6 1580 1601 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 yes no 3 3.0247E-12 67.11 By MS/MS By MS/MS 1 1 0.60974 0.59577 27.463 2 Median 0.48811 0.49062 NaN 1 0 Median 0.76168 0.72346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13457000 7745500 5711300 10422000 5964000 4457900 3035000 1781600 1253400 0 0 0 0 0 0 0 0 0 0 0 0 31971 850 33613 167299;167300 168507;168508;168509 168507 3 SVDPDSPAEASGLR FNLHSDKSKPGQFIRSVDPDSPAEASGLRA RSVDPDSPAEASGLRAQDRIVEVNGVCMEG R S V L R A 2 1 0 2 0 0 1 1 0 0 1 0 0 0 2 3 0 0 0 1 0 0 14 0 1399.6579 O14745 O14745 181 194 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 yes yes 2 8.9325E-08 98.898 By MS/MS By matching By MS/MS 2 1 1 0.89914 0.80319 23.666 4 Median NaN NaN NaN 0 0 Median 1.1798 1.0054 18.107 2 0 Median 0.73627 0.72929 NaN 1 0 Median 0.77665 0.67069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18109000 8845000 9264100 0 0 0 5694300 2413400 3280900 5225400 2655900 2569500 7189400 3775800 3413700 0 0 0 0 0 0 31972 1493 33614 167301;167302;167303;167304 168510;168511;168512;168513 168512 4 SVDPENNPTLVEVLEGVVR EVTEAVLFIMAAIAKSVDPENNPTLVEVLE ENNPTLVEVLEGVVRLPETVHTAVRYTSIE K S V V R L 0 1 2 1 0 0 3 1 0 0 2 0 0 0 2 1 1 0 0 5 0 0 19 0 2065.0691 Q9Y5L0;E9PFH4 Q9Y5L0 450 468 TNPO3 Transportin-3 yes no 2 3.9701E-06 51.211 By MS/MS By MS/MS By matching 1 1 1 0.83127 0.71982 6.2092 3 Plateau 0.79056 0.79421 NaN 1 0 Median 0.83127 0.71982 NaN 1 0 Median 0.66774 0.70804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6624900 3615000 3009900 1231400 667360 564020 4682600 2552100 2130500 710920 395540 315380 0 0 0 0 0 0 0 0 0 31973 4461 33615 167305;167306;167307 168514;168515;168516 168515 3 SVDPTLALSVYLR EDKLECSEELGDLVKSVDPTLALSVYLRAN VKSVDPTLALSVYLRANVPNKVIQCFAETG K S V L R A 1 1 0 1 0 0 0 0 0 0 3 0 0 0 1 2 1 0 1 2 0 0 13 0 1432.7926 A0A087WVQ6;Q00610 A0A087WVQ6 473 485 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 1.0989E-08 96.015 By MS/MS 5 1.1169 0.95571 24.796 4 Median NaN NaN NaN 0 0 Median 1.1169 0.95571 24.796 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22261000 9832600 12429000 0 0 0 22261000 9832600 12429000 0 0 0 0 0 0 0 0 0 0 0 0 31974 44 33616 167308;167309;167310;167311;167312 168517;168518;168519;168520;168521;168522 168519 6 SVDVILDDDLVDK IQEMPEKAPAGQLPRSVDVILDDDLVDKAK PRSVDVILDDDLVDKAKPGDRVQVVGTYRC R S V D K A 0 0 0 5 0 0 0 0 0 1 2 1 0 0 0 1 0 0 0 3 0 0 13 0 1444.7297 P25205;J3KQ69;A0A499FHX9 P25205 216 228 MCM3 DNA replication licensing factor MCM3 yes no 2 0.00021827 80.763 By MS/MS By MS/MS By MS/MS 2 2 1 0.83989 0.81975 35.507 5 Median 0.89046 0.86448 7.5144 2 0 Median 0.7391 0.63779 63.398 2 0 Median 0.73335 0.79867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28342000 14768000 13574000 6464200 3090900 3373200 8759500 4374800 4384700 13119000 7302100 5816400 0 0 0 0 0 0 0 0 0 31975 2129 33617 167313;167314;167315;167316;167317 168523;168524;168525;168526;168527 168523 5 SVDVILDDDLVDKAKPGDR IQEMPEKAPAGQLPRSVDVILDDDLVDKAK ILDDDLVDKAKPGDRVQVVGTYRCLPGKKG R S V D R V 1 1 0 6 0 0 0 1 0 1 2 2 0 0 1 1 0 0 0 3 0 0 19 2 2069.0641 P25205;J3KQ69;A0A499FHX9 P25205 216 234 MCM3 DNA replication licensing factor MCM3 yes no 3 1.2529E-05 48.477 By MS/MS 1 0.64479 0.7329 NaN 1 Median 0.64479 0.7329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12660000 7709800 4949700 12660000 7709800 4949700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31976 2129 33618 167318 168528 168528 1 SVEAAAELSAK ______________________________ MSEKSVEAAAELSAKDLKEKKEKVEEKASR K S V A K D 4 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1074.5557 P20962;F5H7R9;F5GXR3 P20962 5 15 PTMS Parathymosin yes no 2 0.00014645 103.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1 0.95461 0.95634 18.695 11 Median 0.90519 0.84162 8.6981 4 0 Median 1.306 1.1009 7.0804 4 0 Median 0.88057 0.82562 NaN 1 0 Median 1.6567 1.3731 NaN 1 0 Median 0.84017 0.95634 NaN 1 0 Median NaN NaN NaN 0 0 Median 379120000 189990000 189130000 276630000 145130000 131500000 72728000 29943000 42785000 22201000 11514000 10688000 4920000 1998800 2921200 2641700 1408700 1233000 0 0 0 31977 2085 33619 167319;167320;167321;167322;167323;167324;167325;167326;167327;167328;167329 168529;168530;168531;168532;168533;168534;168535;168536;168537;168538;168539;168540;168541;168542;168543;168544;168545;168546;168547;168548;168549;168550;168551;168552;168553;168554 168543 26 SVEDRFDQQKNDYDQLQK TRLTYEIEDEKRRRKSVEDRFDQQKNDYDQ DRFDQQKNDYDQLQKARQCEKENLGWQKLE K S V Q K A 0 1 1 4 0 4 1 0 0 0 1 2 0 1 0 1 0 0 1 1 0 0 18 2 2255.0455 P15924 P15924 1127 1144 DSP Desmoplakin yes yes 3;4 2.3835E-12 109.04 By MS/MS By matching By matching 3 1 1 0.72663 0.7681 14.291 5 Median 0.61223 0.66626 14.794 3 1 Median 0.75076 0.79985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76549 0.78536 NaN 1 0 Median 39960000 23418000 16543000 34422000 20342000 14081000 4877000 2741700 2135300 0 0 0 0 0 0 0 0 0 661060 334300 326760 31978 2021 33620 167330;167331;167332;167333;167334 168555;168556;168557 168557 3 SVEEEEQVWR SILAETEGMLRDLQKSVEEEEQVWRAKVGA RDLQKSVEEEEQVWRAKVGAAEEELQKSRV K S V W R A 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 0 1 0 2 0 0 10 0 1289.5888 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1148 1157 RRBP1 Ribosome-binding protein 1 yes no 2 9.228E-05 114.89 By MS/MS By MS/MS By MS/MS 2 1 1 1.0049 0.97172 21.684 3 Median 0.86154 0.82309 23.476 2 0 Median 1.2245 1.0481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13642000 7452900 6189500 11471000 6502600 4968600 2171300 950330 1220900 0 0 0 0 0 0 0 0 0 0 0 0 31979 4222 33621 167335;167336;167337;167338 168558;168559;168560;168561;168562 168558 4 SVEEISTLVQK EYLNGAVREESIHCKSVEEISTLVQKLADQ IHCKSVEEISTLVQKLADQSGLDVIRIRKP K S V Q K L 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 2 1 0 0 2 0 0 11 0 1231.666 H0Y6Y8;B1AL05;Q8N983;H0YBU8 H0Y6Y8 90 100 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.00014501 101.11 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.2527 1.0759 13.371 6 Median 1.0592 0.99789 NaN 1 0 Median 1.418 1.2057 18.054 2 0 Median 1.1988 1.198 13.257 2 0 Median 1.2436 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53328000 24200000 29128000 20685000 9717800 10968000 16453000 7159600 9293700 14187000 6440600 7746400 2002600 881980 1120600 0 0 0 0 0 0 31980 570 33622 167339;167340;167341;167342;167343;167344 168563;168564;168565;168566;168567 168563 5 SVEEPTQPGGTGLSDSR NPRMKRASSLNFLNKSVEEPTQPGGTGLSD EEPTQPGGTGLSDSRTLSSSSMDLSRRSSL K S V S R T 0 1 0 1 0 1 2 3 0 0 1 0 0 0 2 3 2 0 0 1 0 0 17 0 1715.7962 Q9H0B6 Q9H0B6 589 605 KLC2 Kinesin light chain 2 yes yes 2 8.2724E-08 96.745 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.79037 0.71584 24.793 5 Median 0.75985 0.74519 5.6823 2 1 Median 0.80234 0.69433 NaN 1 0 Median 1.0594 1.1291 NaN 1 0 Median 0.68872 0.5758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18531000 9766900 8763800 6609400 3602500 3006900 7988400 4186900 3801500 2815900 1303000 1512800 1117000 674340 442640 0 0 0 0 0 0 31981 3922 33623 167345;167346;167347;167348;167349;167350 168568;168569;168570;168571;168572;168573;168574 168574 7 SVEESAGLVGLK KHVALHQEFHGKGERSVEESAGLVGLKLPH GERSVEESAGLVGLKLPHQPGGKGWEP___ R S V L K L 1 0 0 0 0 0 2 2 0 0 2 1 0 0 0 2 0 0 0 2 0 0 12 0 1187.6398 Q96HJ9 Q96HJ9 90 101 C7orf55 UPF0562 protein C7orf55 yes yes 2 4.0931E-06 118.18 By MS/MS By MS/MS 1 1 1.4744 1.276 40.933 2 Median 1.0481 0.95532 NaN 1 0 Median 2.0741 1.7043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34192000 14331000 19861000 8710100 3957200 4753000 25482000 10374000 15109000 0 0 0 0 0 0 0 0 0 0 0 0 31982 3667 33624 167351;167352 168575;168576;168577 168576 3 SVEETLR GVIKHLSVNDLPVGRSVEETLRLVKAFQYV VNDLPVGRSVEETLRLVKAFQYVETHGEVC R S V L R L 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 7 0 832.42905 P30048 P30048 208 214 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS 2 2 2 1.194 1.07 46.401 6 Median 0.86595 0.83767 22.489 2 0 Median 1.4432 1.2088 5.118 2 0 Median 1.4676 1.5807 78.54 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34425000 15570000 18855000 19962000 9352000 10610000 9846400 4018500 5827900 4616200 2199200 2417100 0 0 0 0 0 0 0 0 0 31983 2183 33625 167353;167354;167355;167356;167357;167358 168578;168579;168580;168581;168582 168578 5 SVEEVASEIQPFLR LIDKTTLDKLLKGKKSVEEVASEIQPFLRG KSVEEVASEIQPFLRGAGSIAGASASPKEK K S V L R G 1 1 0 0 0 1 3 0 0 1 1 0 0 1 1 2 0 0 0 2 0 0 14 0 1602.8253 P15924 P15924 2000 2013 DSP Desmoplakin yes yes 2 5.754E-08 154.35 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 1 1 3 0.89113 0.85026 32.18 8 Median 0.89113 0.89133 11.499 2 0 Median 1.0261 0.88664 NaN 1 0 Median 0.41119 0.46325 NaN 1 0 Median 1.0149 0.87978 NaN 1 0 Median 0.73687 0.77259 38.746 3 3 Median NaN NaN NaN 0 0 Median 19814000 10031000 9782600 7148500 3554900 3593700 691040 376550 314480 1120100 782360 337690 80815 33526 47289 10774000 5284100 5489500 0 0 0 31984 2021 33626 167359;167360;167361;167362;167363;167364;167365;167366 168583;168584;168585;168586;168587;168588;168589;168590;168591 168586 9 SVEGLQEGSVLR LHLDGNVLDHFSELRSVEGLQEGSVLRVVE ELRSVEGLQEGSVLRVVEEPYTVREARIHV R S V L R V 0 1 0 0 0 1 2 2 0 0 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1272.6674 O75153;K7EIG1;I3L2B0;A0A494C0R8;I3L318 O75153 106 117 CLUH Clustered mitochondria protein homolog yes no 2 0.00019561 85.731 By MS/MS 1 0.72039 0.60651 NaN 1 Median NaN NaN NaN 0 0 Median 0.72039 0.60651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5894000 3127100 2766900 0 0 0 5894000 3127100 2766900 0 0 0 0 0 0 0 0 0 0 0 0 31985 1651 33627 167367 168592;168593 168592 2 SVEGRPLWVLR AAGLPGLARLFSIGRSVEGRPLWVLRLTAG SIGRSVEGRPLWVLRLTAGLGSLIPEGDAG R S V L R L 0 2 0 0 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 2 0 0 11 1 1310.7459 O75976 O75976 88 98 CPD Carboxypeptidase D yes yes 3 0.010643 30.331 By MS/MS 1 1.2724 1.3607 NaN 1 Median 1.2724 1.3607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6989900 2284600 4705300 6989900 2284600 4705300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31986 1714 33628 167368 168594 168594 1 SVELEEALPVTTAEGMAK ______________________________ LEEALPVTTAEGMAKKVTKAGGSAALSPSK M S V A K K 3 0 0 0 0 0 4 1 0 0 2 1 1 0 1 1 2 0 0 2 0 0 18 0 1873.9343 Q92522 Q92522 2 19 H1FX Histone H1x yes yes 2 1.0245E-13 121.28 By MS/MS By MS/MS By matching 2 3 1 0.68894 0.67758 19.431 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75705 0.72135 13.951 2 0 Median NaN NaN NaN 0 0 Median 0.5921 0.60889 11.353 3 0 Median 1.1499 0.95944 NaN 1 0 Median 16830000 9478500 7351200 0 0 0 0 0 0 4018300 2204800 1813500 0 0 0 12197000 7000600 5196400 614390 273060 341330 31987 3531 33629;33630 167369;167370;167371;167372;167373;167374 168595;168596;168597;168598 168596 4 SVELNPTQK ELEENTDKAVECYRRSVELNPTQKDLVLKI VECYRRSVELNPTQKDLVLKIAELLCKNDV R S V Q K D 0 0 1 0 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 9 0 1014.5346 P49792;C9J1W9;C9JF75;C9J6W1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 86 94 RANBP2;RGPD5;RGPD6;RGPD3;RGPD4;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0048762 59.35 By matching By MS/MS By matching 1 3 2 0.91965 0.90829 38.568 6 Median 1.4782 1.4626 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90706 0.98421 45.92 3 0 Median 0.90674 0.82519 2.2176 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6432000 3289700 3142300 867870 341260 526620 0 0 0 4896900 2605700 2291200 667300 342800 324500 0 0 0 0 0 0 31988 2401;525;3762 33631 167375;167376;167377;167378;167379;167380 168599 168599 1 SVELNPTQKDLVLK ELEENTDKAVECYRRSVELNPTQKDLVLKI RSVELNPTQKDLVLKIAELLCKNDVTDGRA R S V L K I 0 0 1 1 0 1 1 0 0 0 3 2 0 0 1 1 1 0 0 2 0 0 14 1 1582.893 P49792;C9J1W9;C9JF75;C9J6W1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715;F8W705 P49792 86 99 RANBP2;RGPD5;RGPD6;RGPD3;RGPD4;RGPD8 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 3 0.044034 16.099 By MS/MS 1 0.66368 0.75374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66368 0.75374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4591000 2268800 2322100 0 0 0 0 0 0 4591000 2268800 2322100 0 0 0 0 0 0 0 0 0 31989 2401;525;3762 33632 167381 168600 168600 1 SVEMHHEALSEALPGDNVGFNVK MVVTFAPVNVTTEVKSVEMHHEALSEALPG LSEALPGDNVGFNVKNVSVKDVRRGNVAGD K S V V K N 2 0 2 1 0 0 3 2 2 0 2 1 1 1 1 2 0 0 0 3 0 0 23 0 2479.1802 P68104;A0A087WVQ9;A0A087WV01;A0A2U3TZH3;Q05639 P68104 291 313 EEF1A1;EEF1A2 Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 3;4 5.0836E-19 85.855 By matching By MS/MS By MS/MS 3 2 3 0.79811 0.71344 20.261 7 Median 0.77018 0.73716 34.356 2 0 Median NaN NaN NaN 0 0 Median 0.87447 0.84208 6.9173 2 0 Median 0.72241 0.65102 12.22 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84135000 45966000 38169000 7821600 3985500 3836100 0 0 0 34423000 17310000 17113000 41890000 24671000 17219000 0 0 0 0 0 0 31990 2632;404 33633;33634 167382;167383;167384;167385;167386;167387;167388;167389 168601;168602;168603;168604;168605;168606;168607;168608 168603 186 8 SVENQESVEIINDLK KVSSVTKRTPRRIKRSVENQESVEIINDLK SVENQESVEIINDLKVSTVTSPSRMIRKLR R S V L K V 0 0 2 1 0 1 3 0 0 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1715.8578 Q8WYP5 Q8WYP5 1878 1892 AHCTF1 Protein ELYS yes yes 2 0.00035883 64.199 By MS/MS 2 0.87082 1.0149 4.6526 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87082 1.0149 4.6526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6398900 3251400 3147500 0 0 0 0 0 0 6398900 3251400 3147500 0 0 0 0 0 0 0 0 0 31991 3524 33635 167390;167391 168609 168609 1 SVEPQDAGPLER HSKGGGRVDEGPQPRSVEPQDAGPLERSQG QPRSVEPQDAGPLERSQGDEAGGHGEDRPE R S V E R S 1 1 0 1 0 1 2 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 12 0 1296.631 Q9NZT2;A0A0A0MRN5 Q9NZT2 349 360 OGFR Opioid growth factor receptor yes no 2 0.00063696 63.283 By MS/MS By MS/MS 1 2 1.0464 0.96269 13.636 3 Median 0.80432 0.78245 NaN 1 0 Median 1.0768 0.98697 3.5216 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7136700 3321300 3815500 3197200 1407400 1789800 3939500 1913900 2025700 0 0 0 0 0 0 0 0 0 0 0 0 31992 166 33636 167392;167393;167394 168610;168611;168612 168611 3 SVEQEENKWK SVLAETEGILQKLQRSVEQEENKWKVKVDE QKLQRSVEQEENKWKVKVDESHKTIKQMQS R S V W K V 0 0 1 0 0 1 3 0 0 0 0 2 0 0 0 1 0 1 0 1 0 0 10 1 1275.6095 Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2 1156 1165 KTN1 Kinectin yes no 2;3 0.003482 99.442 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.2499 1.1942 18.138 5 Median 1.4183 1.4533 NaN 1 0 Median 1.0923 1.0186 11.094 2 1 Median 1.2499 1.4229 NaN 1 0 Median 1.2842 1.1942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10188000 4492100 5695800 1698800 798230 900610 7447100 3269400 4177600 734290 288930 445360 307700 135510 172190 0 0 0 0 0 0 31993 3280 33637 167395;167396;167397;167398;167399 168613;168614 168614 2 SVETDSSTVEHVR ILNNEVFAILNKYMKSVETDSSTVEHVRCF MKSVETDSSTVEHVRCFQPPIHQSLATTC_ K S V V R C 0 1 0 1 0 0 2 0 1 0 0 0 0 0 0 3 2 0 0 3 0 0 13 0 1444.6794 E7EVJ5;H7C229;E7EW33;Q96F07 E7EVJ5 1201 1213 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 2;3 4.0181E-09 103.22 By MS/MS By MS/MS By MS/MS 1 3 2 1.8733 1.5961 23.832 5 Median NaN NaN NaN 0 0 Median 2.174 1.8596 NaN 1 0 Median 1.1419 1.2357 11.828 2 1 Median 2.1189 1.8064 17.508 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7542500 3010400 4532100 0 0 0 2352600 771600 1581000 2588400 1279500 1308900 2601500 959290 1642200 0 0 0 0 0 0 31994 897 33638 167400;167401;167402;167403;167404;167405 168615;168616;168617;168618;168619;168620;168621 168618 7 SVETLKEMIK ARNTGIICTIGPASRSVETLKEMIKSGMNV GPASRSVETLKEMIKSGMNVARLNFSHGTH R S V I K S 0 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 1 0 0 1 0 0 10 1 1176.6424 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;P14618 P14618 57 66 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 0.00089094 129.63 By MS/MS By MS/MS By matching 7 5 1 1.1257 1.0514 17.537 13 Median 1.1419 1.1204 11.071 7 0 Median 0.92985 0.85245 15.962 5 0 Median 1.1263 1.1856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 365630000 165140000 200490000 343860000 154580000 189280000 20450000 9907400 10543000 1319400 648170 671270 0 0 0 0 0 0 0 0 0 31995 2005;1237 33639;33640 167406;167407;167408;167409;167410;167411;167412;167413;167414;167415;167416;167417;167418 168622;168623;168624;168625;168626;168627;168628;168629;168630;168631;168632 168630 417 11 SVEVQGETETIIATK TEKQELLQKTEAFAKSVEVQGETETIIATK SVEVQGETETIIATKTTDVEGRLSALLQET K S V T K T 1 0 0 0 0 1 3 1 0 2 0 1 0 0 0 1 3 0 0 2 0 0 15 0 1603.8305 O60763 O60763 828 842 USO1 General vesicular transport factor p115 yes yes 2 3.976E-05 84.289 By MS/MS By matching 1 1 1.1142 1.0293 11.643 2 Median 0.97416 0.94795 NaN 1 0 Median 1.2743 1.1176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6812100 3596400 3215700 6178900 3333400 2845500 633210 262980 370240 0 0 0 0 0 0 0 0 0 0 0 0 31996 1630 33641 167419;167420 168633;168634 168634 2 SVEYEGDLK IEPCAENRLDTKEEKSVEYEGDLKSGTAET DTKEEKSVEYEGDLKSGTAETEPVEQDSSQ K S V L K S 0 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1038.487 A6NNK5;Q12888;C9JXV0;H7C3N7 A6NNK5 814 822 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 0.0023677 72.485 By MS/MS By MS/MS 1 2 1.1666 1.0615 17.647 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79209 0.87928 NaN 1 0 Median 1.2449 1.1524 11.618 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9598800 4894000 4704800 0 0 0 0 0 0 7375200 3922200 3453000 2223500 971740 1251800 0 0 0 0 0 0 31997 530 33642 167421;167422;167423 168635;168636;168637;168638 168638 4 SVFALTNGIYPHK LPKIKAIPQLQGYLRSVFALTNGIYPHKLV LRSVFALTNGIYPHKLVF____________ R S V H K L 1 0 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 1 0 0 13 0 1445.7667 Q02878 Q02878 273 285 RPL6 60S ribosomal protein L6 yes yes 2;3 5.1394E-09 102.06 By MS/MS By MS/MS 5 1 0.96636 0.92773 1.8036 2 Median 0.96636 0.92773 1.8036 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39086000 23061000 16025000 39086000 23061000 16025000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31998 2703 33643 167424;167425;167426;167427;167428;167429 168639;168640;168641;168642;168643;168644;168645 168644 7 SVFDEELTNTSK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL GKKSVFDEELTNTSKKALKQYRAGPSFEER K S V S K K 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 12 0 1368.6409 B7Z6D5;Q96GQ7 B7Z6D5 715 726 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 1.3125E-09 175.73 By MS/MS By MS/MS 1 1 1.2591 1.1583 12.338 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2386 1.2639 NaN 1 0 Median 1.2799 1.0615 NaN 1 0 Median 14628000 6670900 7956800 0 0 0 0 0 0 0 0 0 0 0 0 13482000 6214300 7268100 1145300 456550 688740 31999 635 33644 167430;167431 168646;168647 168646 2 SVFDEELTNTSKK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL KKSVFDEELTNTSKKALKQYRAGPSFEERK K S V K K A 0 0 1 1 0 0 2 0 0 0 1 2 0 1 0 2 2 0 0 1 0 0 13 1 1496.7359 B7Z6D5;Q96GQ7 B7Z6D5 715 727 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.0043676 31.827 By matching By MS/MS 1 2 0.87891 0.98448 23.727 3 Median NaN NaN NaN 0 0 Median 0.77184 0.69957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90857 1.0424 8.0884 2 0 Median NaN NaN NaN 0 0 Median 16804000 9837900 6965900 0 0 0 4727000 3323500 1403500 0 0 0 0 0 0 12077000 6514400 5562500 0 0 0 32000 635 33645 167432;167433;167434 168648 168648 1 SVFDVLDGEEMR EFCGEELLHSVLQCKSVFDVLDGEEMRRAR QCKSVFDVLDGEEMRRARTRANPYEMIRGV K S V M R R 0 1 0 2 0 0 2 1 0 0 1 0 1 1 0 1 0 0 0 2 0 0 12 0 1395.634 Q8N1G2 Q8N1G2 204 215 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes yes 2 5.6046E-05 94.692 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0454 0.98267 8.1981 4 Median 0.93248 0.94219 NaN 1 0 Median 1.1813 1.0249 NaN 1 0 Median 1.0033 1.0767 NaN 1 0 Median 1.0893 0.89727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4721200 1978500 2742800 697980 335940 362040 2495100 909700 1585400 1421700 689000 732720 106440 43834 62604 0 0 0 0 0 0 32001 3358 33646 167435;167436;167437;167438 168649;168650;168651;168652 168652 4 SVFEAFGK YVASVHQDLSDDDIKSVFEAFGKIKSCTLA LSDDDIKSVFEAFGKIKSCTLARDPTTGKH K S V G K I 1 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 0 0 0 1 0 0 8 0 883.44397 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;H0YCP8 A0A0J9YVP6 219 226 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.011256 57.281 By MS/MS By MS/MS By matching 1 4 1 1.1771 1.0603 6.0083 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.116 1.0797 NaN 1 0 Median 1.1771 1.0275 4.3754 4 0 Median NaN NaN NaN 0 0 Median 1.3827 1.1521 NaN 1 0 Median 36889000 16943000 19945000 0 0 0 0 0 0 25515000 11801000 13714000 9094000 4107500 4986500 0 0 0 2279100 1034900 1244200 32002 284 33647 167439;167440;167441;167442;167443;167444 168653;168654;168655;168656;168657 168653 5 SVFEEEVR ENRCQSLQEELDFRKSVFEEEVRETRRRHE EELDFRKSVFEEEVRETRRRHERRLVEVDS K S V V R E 0 1 0 0 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 993.47673 Q03252 Q03252 224 231 LMNB2 Lamin-B2 yes yes 2 0.0024483 134.66 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 3 2 1.1434 1.1431 27.138 10 Median NaN NaN NaN 0 0 Median 1.0508 0.91593 NaN 1 0 Median 0.88575 0.89233 26.665 2 0 Median 1.8222 1.5489 34.613 2 1 Median 0.98919 0.98404 16.703 3 0 Median 1.5795 1.3177 6.8246 2 0 Median 98345000 45225000 53120000 0 0 0 846910 432320 414590 21160000 9865000 11295000 9928900 3158600 6770300 52535000 26129000 26406000 13875000 5640000 8234800 32003 2709 33648 167445;167446;167447;167448;167449;167450;167451;167452;167453;167454;167455 168658;168659;168660;168661;168662;168663;168664;168665;168666;168667;168668 168660 11 SVFEEEVRETR ENRCQSLQEELDFRKSVFEEEVRETRRRHE DFRKSVFEEEVRETRRRHERRLVEVDSSRQ K S V T R R 0 2 0 0 0 0 4 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 11 1 1379.6681 Q03252 Q03252 224 234 LMNB2 Lamin-B2 yes yes 2;3 0.00050974 123.51 By MS/MS By MS/MS 4 5 1.326 1.1854 20.163 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9069 0.99345 15.19 3 0 Plateau 1.3809 1.2483 4.9692 5 2 Median 123410000 61537000 61875000 0 0 0 0 0 0 0 0 0 0 0 0 97191000 50856000 46335000 26221000 10681000 15540000 32004 2709 33649 167456;167457;167458;167459;167460;167461;167462;167463;167464 168669;168670;168671;168672;168673;168674;168675;168676;168677;168678;168679;168680 168671 12 SVFGTPTLETANK FRRSDDMFTFHGPGKSVFGTPTLETANKNH GKSVFGTPTLETANKNHETDGGSAHGDDDD K S V N K N 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 1 3 0 0 1 0 0 13 0 1363.6983 P49792 P49792 1140 1152 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 5.6706E-07 106.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.8472 0.79433 20.726 6 Median 0.54337 0.54364 NaN 1 1 Median 0.88507 0.77524 5.3467 2 0 Median 0.88073 0.95299 3.7786 2 1 Median 0.79897 0.7837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108480000 56137000 52348000 8695300 5325300 3369900 8227400 4357300 3870200 86155000 43507000 42648000 5406800 2947100 2459700 0 0 0 0 0 0 32005 2401 33650 167465;167466;167467;167468;167469;167470;167471 168681;168682;168683;168684;168685;168686;168687;168688;168689;168690;168691 168682 11 SVFILGASGETGR EALSKLREDFRMQNKSVFILGASGETGRVL NKSVFILGASGETGRVLLKEILEQGLFSKV K S V G R V 1 1 0 0 0 0 1 3 0 1 1 0 0 1 0 2 1 0 0 1 0 0 13 0 1292.6725 E9PI87;Q9BUP3 E9PI87 20 32 HTATIP2 Oxidoreductase HTATIP2 yes no 2 1.9408E-05 94.616 By MS/MS By MS/MS 1 1 1.426 1.2581 20.928 2 Median 1.5587 1.4588 NaN 1 0 Median 1.3046 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27050000 11399000 15652000 18542000 7552700 10989000 8508500 3845900 4662500 0 0 0 0 0 0 0 0 0 0 0 0 32006 939 33651 167472;167473 168692;168693;168694 168694 3 SVFINNVLSK SAVPKQVVTGTVLTRSVFINNVLSKIGEVW TVLTRSVFINNVLSKIGEVWASKEPINSTT R S V S K I 0 0 2 0 0 0 0 0 0 1 1 1 0 1 0 2 0 0 0 2 0 0 10 0 1119.6288 Q8WYP5 Q8WYP5 1052 1061 AHCTF1 Protein ELYS yes yes 2 0.0020033 78.556 By MS/MS 2 0.41433 0.44939 98.78 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41433 0.44939 98.78 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37798000 26967000 10831000 0 0 0 0 0 0 37798000 26967000 10831000 0 0 0 0 0 0 0 0 0 32007 3524 33652 167474;167475 168695;168696 168695 2 SVFLDQMK AILKWYKEAHVAKGKSVFLDQMKKFVEWLQ AHVAKGKSVFLDQMKKFVEWLQNA______ K S V M K K 0 0 0 1 0 1 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 8 0 966.48445 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4 E7ETZ4 392 399 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.017569 48.561 By matching By MS/MS 1 1 1.0943 1.025 55.499 2 Median NaN NaN NaN 0 0 Median 0.77976 0.69227 NaN 1 0 Median 1.5356 1.5175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4493600 1734700 2758900 0 0 0 559340 325460 233880 3934200 1409200 2525000 0 0 0 0 0 0 0 0 0 32008 892 33653 167476;167477 168697 168697 1 SVFLEQMK PILKWYKDAHVAKGKSVFLEQMKKFVEWLK AHVAKGKSVFLEQMKKFVEWLKNAEEESES K S V M K K 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 8 0 980.5001 Q7L1Q6;H0Y503 Q7L1Q6 391 398 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.043414 54.549 By MS/MS 1 1.1046 1.0299 NaN 1 Median 1.1046 1.0299 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8397300 3796700 4600600 8397300 3796700 4600600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32009 3219 33654 167478 168698 168698 1 SVFMSSTTSASGTGR YLIKPLNKTYLEVVRSVFMSSTTSASGTGR SVFMSSTTSASGTGRKRTIKDLQEEVSNLY R S V G R K 1 1 0 0 0 0 0 2 0 0 0 0 1 1 0 5 3 0 0 1 0 0 15 0 1474.6722 O94874 O94874 519 533 UFL1 E3 UFM1-protein ligase 1 yes yes 2 1.9665E-05 85.522 By MS/MS 1 1.1358 1.0918 NaN 1 Median 1.1358 1.0918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4368700 2066800 2301900 4368700 2066800 2301900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32010 1732 33655 167479 168699 168699 1 SVFPEQANNNEWAR LHYSLYDQAEKLVSKSVFPEQANNNEWARY KSVFPEQANNNEWARYLYYTGRIKAIQLEY K S V A R Y 2 1 3 0 0 1 2 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 14 0 1660.7594 O43242 O43242 274 287 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 2.7183E-06 133.89 By MS/MS By MS/MS By MS/MS 3 3 1 1.109 0.94034 15.733 7 Median 0.96167 0.94003 12.109 3 0 Median 1.109 0.94034 20.077 3 1 Median 1.2202 1.2377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86359000 41712000 44647000 68061000 33298000 34764000 10436000 4876200 5560000 7861700 3538700 4323000 0 0 0 0 0 0 0 0 0 32011 1560 33656 167480;167481;167482;167483;167484;167485;167486 168700;168701;168702;168703;168704;168705 168703 6 SVFVGNIPYEATEEQLK SSLAVRDPAMDRSLRSVFVGNIPYEATEEQ FVGNIPYEATEEQLKDIFSEVGSVVSFRLV R S V L K D 1 0 1 0 0 1 3 1 0 1 1 1 0 1 1 1 1 0 1 2 0 0 17 0 1922.9626 P33240;E7EWR4;E9PID8;Q9H0L4 Q9H0L4 17 33 CSTF2;CSTF2T Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant no no 2 4.6458E-05 62.89 By MS/MS 1 0.75072 0.7904 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75072 0.7904 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5217100 3144000 2073100 0 0 0 0 0 0 5217100 3144000 2073100 0 0 0 0 0 0 0 0 0 32012 2222;3927 33657 167487 168706 168706 1 SVFVGNLPYKVEESAIEK IRVDLASETSSRDKRSVFVGNLPYKVEESA VGNLPYKVEESAIEKHFLDCGSIMAVRIVR R S V E K H 1 0 1 0 0 0 3 1 0 1 1 2 0 1 1 2 0 0 1 3 0 0 18 1 2008.0517 P42696;A2A2V2 P42696 288 305 RBM34 RNA-binding protein 34 yes no 3 0.0096486 23.33 By matching By MS/MS 1 1 0.83597 0.88876 28.039 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0229 1.0837 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68318 0.72892 NaN 1 0 Median NaN NaN NaN 0 0 Median 6767800 3239900 3527900 0 0 0 0 0 0 864330 338540 525800 0 0 0 5903500 2901400 3002100 0 0 0 32013 2314 33658 167488;167489 168707;168708 168708 2 SVGDGETVEFDVVEGEK HQTAIKKNNPRKYLRSVGDGETVEFDVVEG GDGETVEFDVVEGEKGAEAANVTGPGGVPV R S V E K G 0 0 0 2 0 0 4 3 0 0 0 1 0 1 0 1 1 0 0 4 0 0 17 0 1794.816 P16989;A0A0D9SEI8;Q9Y2T7;P67809;H0Y449 P67809 102 118 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2 1.3712E-13 113.65 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 4 2 1.2865 1.2135 24.64 14 Median 1.2265 1.1486 6.2 2 0 Median 1.0798 0.93673 1.82 2 0 Median 1.2753 1.2272 23.29 3 2 Median 2.3301 2.091 NaN 1 1 Median 1.5021 1.4606 7.3715 4 3 Median 1.206 1.0168 6.0201 2 0 Median 72036000 28762000 43273000 18864000 8679000 10185000 2910600 1612600 1298000 24151000 9437900 14713000 6842700 1331000 5511700 18341000 7299600 11041000 926490 402260 524230 32014 2627;2033 33659 167490;167491;167492;167493;167494;167495;167496;167497;167498;167499;167500;167501;167502;167503 168709;168710;168711;168712;168713;168714;168715;168716;168717;168718;168719 168710 11 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK HQTAIKKNNPRKYLRSVGDGETVEFDVVEG ANVTGPGGVPVQGSKYAADRNHYRRYPRRR R S V S K Y 3 0 1 2 0 1 5 8 0 0 0 2 0 1 2 2 2 0 0 7 0 0 36 1 3471.6642 P67809;H0Y449 P67809 102 137 YBX1 Nuclease-sensitive element-binding protein 1 yes no 3 0.010215 16.068 By MS/MS By matching By MS/MS 1 1 1 0.80871 0.81817 22.64 3 Plateau 0.73733 0.70731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63795 0.60594 NaN 1 0 Median 0.88701 0.9464 NaN 1 0 Median NaN NaN NaN 0 0 Median 12344000 6186500 6157100 5797000 3276500 2520500 0 0 0 0 0 0 619850 425060 194790 5926700 2485000 3441800 0 0 0 32015 2627 33660 167504;167505;167506 168720;168721;168722;168723 168721 4 SVGDNSSDLSNVAVIDGNR GWHYLAYDWHWTTDRSVGDNSSDLSNVAVI NSSDLSNVAVIDGNRVLVTVFRQTVVPPPM R S V N R V 1 1 3 3 0 0 0 2 0 1 1 0 0 0 0 4 0 0 0 3 0 0 19 0 1917.9028 O95163;F5H2T0 O95163 380 398 IKBKAP Elongator complex protein 1 yes no 2 1.9639E-09 88.075 By MS/MS By matching 1 1 1.142 1.0371 6.972 2 Median 1.1555 1.0895 NaN 1 0 Median 1.1286 0.98717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8537900 4622200 3915700 7417200 4075800 3341400 1120800 546460 574310 0 0 0 0 0 0 0 0 0 0 0 0 32016 1749 33661 167507;167508 168724 168724 1 SVGELPSTVESLQK ETQLVLYGDVEELKRSVGELPSTVESLQKV RSVGELPSTVESLQKVQEQVHTLLSQDQAQ R S V Q K V 0 0 0 0 0 1 2 1 0 0 2 1 0 0 1 3 1 0 0 2 0 0 14 0 1472.7722 Q07065 Q07065 492 505 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 6.6998E-11 126.19 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.1857 1.0794 110.57 6 Median 0.86663 0.79806 NaN 1 0 Median 1.3068 1.0901 NaN 1 0 Median 0.28285 0.29604 181.56 2 1 Median 1.7702 1.5057 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7777 1.477 NaN 1 0 Median 187420000 97001000 90416000 111100000 56761000 54344000 24359000 10158000 14201000 45151000 27577000 17574000 4202300 1462100 2740200 0 0 0 2599500 1042600 1556900 32017 2730 33662 167509;167510;167511;167512;167513;167514 168725;168726;168727;168728;168729;168730;168731;168732;168733 168729 9 SVGEVMGIGR SKFLRVSTKIGSCMKSVGEVMGIGRSFEEA GSCMKSVGEVMGIGRSFEEAFQKALRMVDE K S V G R S 0 1 0 0 0 0 1 3 0 1 0 0 1 0 0 1 0 0 0 2 0 0 10 0 1003.5121 F8VPD4;P27708 F8VPD4 698 707 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00037568 91.069 By MS/MS By MS/MS By matching 2 2 1 1.3376 1.1287 10.171 5 Median 1.3169 1.2732 3.8128 2 0 Median 1.2563 1.0655 8.1483 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3697 1.1143 NaN 1 0 Median 34330000 15209000 19121000 17934000 8139600 9794500 14289000 6236200 8052700 0 0 0 0 0 0 0 0 0 2107000 833390 1273600 32018 1057 33663 167515;167516;167517;167518;167519 168734;168735;168736;168737;168738;168739;168740 168737 7 SVGFIGAGQLAYALAR ______________________________ VGFIGAGQLAYALARGFTAAGILSAHKIIA M S V A R G 4 1 0 0 0 1 0 3 0 1 2 0 0 1 0 1 0 0 1 1 0 0 16 0 1592.8675 Q96C36;A0A087WTV6;J3KR12 Q96C36 2 17 PYCR2 Pyrroline-5-carboxylate reductase 2 yes no 2 0.00010429 71.016 By matching By MS/MS By matching 1 1 1 1.6464 1.4774 5.7127 3 Median NaN NaN NaN 0 0 Median 1.6321 1.4083 NaN 1 0 Median 1.6464 1.5781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6759 1.4774 NaN 1 0 Median 1538500 594720 943750 0 0 0 159480 64247 95238 1322300 514290 807970 0 0 0 0 0 0 56734 16190 40544 32019 3615 33664 167520;167521;167522 168741 168741 1 SVGGDSDTEDMR DRVKELINLIQCRKKSVGGDSDTEDMRSKT RKKSVGGDSDTEDMRSKTVLKRKLEDLPEN K S V M R S 0 1 0 3 0 0 1 2 0 0 0 0 1 0 0 2 1 0 0 1 0 0 12 0 1267.4987 Q9UK61;A0A087X0F1 Q9UK61 694 705 FAM208A Protein FAM208A yes no 2 0.037278 45.997 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32020 4307 33665 167523 168742 168742 1 SVGGSFYLQSK EVQKNYEHLFKVNDKSVGGSFYLQSKVVRA VNDKSVGGSFYLQSKVVRAKERLDEELKIQ K S V S K V 0 0 0 0 0 1 0 2 0 0 1 1 0 1 0 3 0 0 1 1 0 0 11 0 1171.5873 A0A0A6YYL4;I3L1U7;I3L0X9;I3L3T0;Q9Y3D7 A0A0A6YYL4 1010 1020 CORO7-PAM16;PAM16 Coronin;Mitochondrial import inner membrane translocase subunit TIM16 yes no 2 0.00013559 86.898 By MS/MS 1 1.1979 1.0826 NaN 1 Median 1.1979 1.0826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33673000 14144000 19529000 33673000 14144000 19529000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32021 209 33666 167524 168743 168743 1 SVGGSGGGSFGDNLVTR SGSSASSVTVTRSYRSVGGSGGGSFGDNLV GGSGGGSFGDNLVTRSYLLGNSSPRTQSPQ R S V T R S 0 1 1 1 0 0 0 6 0 0 1 0 0 1 0 3 1 0 0 2 0 0 17 0 1565.7434 P02545;A0A0C4DGC5 P02545 628 644 LMNA Prelamin-A/C;Lamin-A/C yes no 2 2.8318E-18 170.66 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 8 5 0.97394 0.86565 13.152 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8932 0.85242 27.702 3 0 Median 1.017 0.86434 12.137 4 0 Median 0.92118 0.95082 7.1015 8 0 Median 1.0408 0.83551 4.6788 5 0 Median 264610000 132480000 132130000 0 0 0 0 0 0 100910000 49457000 51451000 12931000 6441500 6489700 126250000 64894000 61360000 24515000 11689000 12826000 32022 1834 33667 167525;167526;167527;167528;167529;167530;167531;167532;167533;167534;167535;167536;167537;167538;167539;167540;167541;167542;167543;167544 168744;168745;168746;168747;168748;168749;168750;168751;168752;168753;168754;168755;168756;168757;168758;168759;168760;168761;168762;168763;168764;168765;168766;168767;168768;168769;168770;168771;168772;168773;168774;168775;168776;168777;168778;168779 168752 36 SVGKIEHSFWR NLLLDMQNRLNKVIKSVGKIEHSFWRSFHT KVIKSVGKIEHSFWRSFHTERKTEPATGFI K S V W R S 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 2 0 1 0 1 0 0 11 1 1344.6939 Q16531 Q16531 1064 1074 DDB1 DNA damage-binding protein 1 yes yes 3 0.00021265 65.056 By MS/MS By MS/MS 1 2 0.76659 0.86852 32.481 3 Median 1.361 1.4027 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7076 0.80978 9.9026 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15199000 8806000 6393300 5451800 3251100 2200700 0 0 0 9747500 5554900 4192600 0 0 0 0 0 0 0 0 0 32023 2985 33668 167545;167546;167547 168780;168781;168782 168782 3 SVGLANQELAEVVSR VPKDDLYNNLIVNPRSVGLANQELAEVVSR SVGLANQELAEVVSRAVSDGYSCVTLGGDH R S V S R A 2 1 1 0 0 1 2 1 0 0 2 0 0 0 0 2 0 0 0 3 0 0 15 0 1570.8315 P78540 P78540 91 105 ARG2 Arginase-2, mitochondrial yes yes 2 2.1519E-09 102.66 By MS/MS By matching 1 1 1.2469 1.1466 5.169 2 Median 1.1989 1.1893 NaN 1 0 Median 1.2969 1.1055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7357400 3293100 4064300 6605200 2966800 3638500 752170 326310 425850 0 0 0 0 0 0 0 0 0 0 0 0 32024 2648 33669 167548;167549 168783 168783 1 SVGLEVYTQSFSR KSGALPVAWLERTMRSVGLEVYTQSFSRKL MRSVGLEVYTQSFSRKLPFPDETHERYMVS R S V S R K 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 3 1 0 1 2 0 0 13 0 1471.7307 E9PLV6;E9PPZ9;O43292;E9PLG8 E9PLV6 98 110 GPAA1 Glycosylphosphatidylinositol anchor attachment 1 protein yes no 2 1.5075E-40 185.96 By MS/MS By matching 2 1 0.96723 0.96101 39.025 3 Median 1.267 1.2464 36.777 2 1 Median NaN NaN NaN 0 0 Median 0.78695 0.75299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23464000 10472000 12992000 19581000 8578000 11003000 0 0 0 3883500 1894500 1989000 0 0 0 0 0 0 0 0 0 32025 964 33670 167550;167551;167552 168784;168785 168784 2 SVGMIAGGTGITPMLQVIR IRPDKKSNPIIRTVKSVGMIAGGTGITPML IAGGTGITPMLQVIRAIMKDPDDHTVCHLL K S V I R A 1 1 0 0 0 1 0 4 0 3 1 0 2 0 1 1 2 0 0 2 0 0 19 0 1900.0274 P00387 P00387 174 192 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes yes 2;3 4.6926E-18 141.38 By MS/MS By MS/MS By matching By matching By matching 7 5 3 1 1 1.1876 1.0807 23.117 17 Median 0.95312 0.90871 12.6 7 0 Median 1.4197 1.1836 7.8098 5 0 Median 0.7598 0.737 31.565 3 0 Median 1.7006 1.4322 NaN 1 0 Median 1.6017 1.5596 NaN 1 0 Median NaN NaN NaN 0 0 Median 142460000 69198000 73264000 112530000 56065000 56470000 19783000 7878600 11904000 9008900 4878200 4130700 127800 47379 80416 1008800 329250 679550 0 0 0 32026 1816 33671;33672 167553;167554;167555;167556;167557;167558;167559;167560;167561;167562;167563;167564;167565;167566;167567;167568;167569 168786;168787;168788;168789;168790;168791;168792;168793;168794;168795;168796;168797;168798;168799;168800 168792 585;586 15 SVGNTIDPVILFQK QYLNKLSMKPEPLFRSVGNTIDPVILFQKM RSVGNTIDPVILFQKMGVGKLEMYVLNPVK R S V Q K M 0 0 1 1 0 1 0 1 0 2 1 1 0 1 1 1 1 0 0 2 0 0 14 0 1529.8453 P46821;D6RA32;D6RA40 P46821 401 414 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2 6.0976E-06 93.561 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 1 2 1.0782 1.0546 16.758 11 Median 0.9536 0.95371 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77922 0.84294 20.662 4 0 Median 1.3376 1.1681 5.1872 3 0 Median 0.96066 1.0124 NaN 1 0 Median 1.2717 1.0961 5.4631 2 0 Median 45960000 22287000 23673000 7986500 3902100 4084300 0 0 0 26901000 13367000 13533000 8852000 3871000 4981100 1497400 828840 668540 723520 317250 406270 32027 2347 33673 167570;167571;167572;167573;167574;167575;167576;167577;167578;167579;167580 168801;168802;168803;168804;168805;168806;168807;168808;168809;168810;168811;168812;168813;168814 168805 14 SVGPDFGK FAHKRSERLQRAPLKSVGPDFGKKRLGLPG LQRAPLKSVGPDFGKKRLGLPGDEVDNKVK K S V G K K 0 0 0 1 0 0 0 2 0 0 0 1 0 1 1 1 0 0 0 1 0 0 8 0 805.39702 P78527 P78527 2695 2702 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.059409 48.561 By MS/MS 1 1.0669 0.93557 NaN 1 Median NaN NaN NaN 0 0 Median 1.0669 0.93557 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7199800 3648100 3551700 0 0 0 7199800 3648100 3551700 0 0 0 0 0 0 0 0 0 0 0 0 32028 2647 33674 167581 168815 168815 1 SVGQGYSVGQSMR MMSSVHLQQNNYGVKSVGQGYSVGQSMRLG VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS K S V M R L 0 1 0 0 0 2 0 3 0 0 0 0 1 0 0 3 0 0 1 2 0 0 13 0 1354.6299 Q9H2P0;A0A2R8Y6X0 Q9H2P0 336 348 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.061827 37.968 By MS/MS 1 1.5037 1.2241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5037 1.2241 NaN 1 1 Median 1895300 770010 1125200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1895300 770010 1125200 32029 3946 33675 167582 168816 168816 1 SVGYKPDFVGFEIPDK KMVKVASLLVKRTPRSVGYKPDFVGFEIPD VGYKPDFVGFEIPDKFVVGYALDYNEYFRD R S V D K F 0 0 0 2 0 0 1 2 0 1 0 2 0 2 2 1 0 0 1 2 0 0 16 1 1796.8985 P00492 P00492 171 186 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 3 0.0028347 28.212 By MS/MS By matching 1 1 0.90714 0.87648 2.0827 2 Median 0.87495 0.88948 NaN 1 0 Median 0.94052 0.86366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11700000 5605500 6094500 11114000 5304700 5809300 585980 300790 285190 0 0 0 0 0 0 0 0 0 0 0 0 32030 1822 33676 167583;167584 168817;168818 168817 2 SVHAWEISDQLLQIR SGKERASFWLGELQRSVHAWEISDQLLQIR SVHAWEISDQLLQIRQDVESCYFAAQTMKM R S V I R Q 1 1 0 1 0 2 1 0 1 2 2 0 0 0 0 2 0 1 0 1 0 0 15 0 1793.9424 Q9Y5L0;C9J7E5 Q9Y5L0 40 54 TNPO3 Transportin-3 yes no 3 0.010038 24.558 By MS/MS By matching By matching 1 1 1 1.3381 1.1694 10.013 3 Median NaN NaN NaN 0 0 Median 1.3381 1.1694 NaN 1 0 Median 1.065 1.1355 NaN 1 0 Median 1.5707 1.368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4295300 1771000 2524300 0 0 0 1745600 687890 1057700 1015100 520360 494710 1534600 562730 971920 0 0 0 0 0 0 32031 4461 33677 167585;167586;167587 168819 168819 1 SVHFPGQAVGTR RVIQQLEGAFALVFKSVHFPGQAVGTRRGS VFKSVHFPGQAVGTRRGSPLLIGVRSEHKL K S V T R R 1 1 0 0 0 1 0 2 1 0 0 0 0 1 1 1 1 0 0 2 0 0 12 0 1254.6469 Q06210 Q06210 191 202 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2;3 0.00095468 46.358 By MS/MS By MS/MS 2 2 1.0656 1.0083 40.622 3 Median 1.2194 1.1548 19.178 2 0 Median 0.68451 0.59492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18532000 9006200 9525600 16462000 7856600 8605300 2069900 1149600 920380 0 0 0 0 0 0 0 0 0 0 0 0 32032 2723 33678 167588;167589;167590;167591 168820;168821;168822;168823;168824;168825 168821 6 SVIDPVPAPVGDSHVDGAAK VIAPRPDHTKSIYTRSVIDPVPAPVGDSHV VPAPVGDSHVDGAAKSLDKQKKKTKMTDEE R S V A K S 3 0 0 3 0 0 0 2 1 1 0 1 0 0 3 2 0 0 0 4 0 0 20 0 1929.9796 Q13177 Q13177 197 216 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 3 5.5631E-06 46.362 By MS/MS By MS/MS By matching 1 1 1 0.67512 0.58134 4.131 3 Median 0.6227 0.58134 NaN 1 0 Median 0.73214 0.62394 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67512 0.58038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27169000 16044000 11125000 22082000 12986000 9095700 4341700 2550200 1791500 0 0 0 745550 507670 237880 0 0 0 0 0 0 32033 2794 33679 167592;167593;167594 168826;168827;168828;168829;168830 168827 5 SVIDYQTHFR TQMESACVSIHEALKSVIDYQTHFRLREAQ HEALKSVIDYQTHFRLREAQGRSRAEDLNT K S V F R L 0 1 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 0 1 1 0 0 10 0 1264.62 A0A0A6YYA0;Q9Y3B3 A0A0A6YYA0 160 169 TMED7-TICAM2;TMED7 Transmembrane emp24 domain-containing protein 7 yes no 2;3 1.1729E-07 138.54 By MS/MS By MS/MS By MS/MS By matching By matching 8 5 1 1 1 1.2535 1.2031 8.5633 16 Median 1.2178 1.2031 7.1051 8 2 Median 1.4138 1.2003 7.027 5 1 Median 1.4326 1.3743 NaN 1 0 Median 1.6377 1.3424 NaN 1 0 Median 1.0676 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median 168050000 74396000 93659000 112330000 51878000 60451000 48221000 19396000 28825000 5903900 2351200 3552700 366860 123040 243830 1234800 648290 586530 0 0 0 32034 201 33680 167595;167596;167597;167598;167599;167600;167601;167602;167603;167604;167605;167606;167607;167608;167609;167610 168831;168832;168833;168834;168835;168836;168837;168838;168839;168840;168841;168842;168843;168844;168845;168846;168847 168834 17 SVIEALKDNFNK VEDIINLEEVNEEMKSVIEALKDNFNKTLN EMKSVIEALKDNFNKTLNIRTSPGSLDKIA K S V N K T 1 0 2 1 0 0 1 0 0 1 1 2 0 1 0 1 0 0 0 1 0 0 12 1 1376.73 Q96E11;X6RDS5 Q96E11 94 105 MRRF Ribosome-recycling factor, mitochondrial yes no 2;3 8.782E-09 173.37 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 3 2 1 1 0.99952 1.0066 33.5 10 Median 0.91703 0.92383 8.7275 2 0 Median 1.552 1.4226 NaN 1 0 Median 1.0342 1.0311 26.325 3 0 Median 0.91246 0.78658 68.694 2 0 Median 0.80706 0.94811 NaN 1 0 Median 1.5456 1.4108 NaN 1 0 Median 53379000 24981000 28398000 20182000 10352000 9830200 1199400 388890 810480 22983000 10483000 12501000 7216700 2934800 4281900 412160 254670 157490 1385900 568510 817360 32035 3631 33681 167611;167612;167613;167614;167615;167616;167617;167618;167619;167620 168848;168849;168850;168851;168852;168853;168854;168855 168852 8 SVIEPLPVTPTR VIAPRPEHTKSVYTRSVIEPLPVTPTRDVA YTRSVIEPLPVTPTRDVATSPISPTENNTT R S V T R D 0 1 0 0 0 0 1 0 0 1 1 0 0 0 3 1 2 0 0 2 0 0 12 0 1307.7449 Q13153;E9PM17;B3KNX7;H0YCM0 Q13153 204 215 PAK1 Serine/threonine-protein kinase PAK 1;Non-specific serine/threonine protein kinase yes no 2 0.00026027 83.862 By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 0.58737 0.62432 11.346 5 Median 0.54787 0.51779 NaN 1 0 Median 0.7648 0.66235 NaN 1 0 Median 0.5865 0.61305 2.5757 2 0 Median 0.83517 0.69737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34441000 21593000 12848000 20827000 13843000 6983900 4792500 2852500 1940000 7390400 4073300 3317100 1431000 824240 606730 0 0 0 0 0 0 32036 2791 33682 167621;167622;167623;167624;167625 168856;168857;168858;168859;168860 168857 5 SVIEQGGIQTVDQLIK VSGDTVPQSILTKSRSVIEQGGIQTVDQLI VIEQGGIQTVDQLIKELPELLQRNREILDE R S V I K E 0 0 0 1 0 3 1 2 0 3 1 1 0 0 0 1 1 0 0 2 0 0 16 0 1726.9465 Q8WUM4 Q8WUM4 423 438 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 1.7893E-06 88.441 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 1 2 2 1.1329 0.9995 55.342 11 Median 0.88526 0.85698 30.303 3 0 Median 1.1178 0.97295 0.2184 2 0 Median 1.222 1.3349 NaN 1 0 Median 1.1097 0.96482 NaN 1 0 Median 3.2827 3.4173 24.912 2 1 Median 1.1958 1.0064 0.97564 2 0 Median 57053000 25344000 31709000 19706000 10004000 9701900 19817000 9279500 10537000 9953000 4033400 5919600 796000 354540 441460 5350600 1037800 4312800 1431200 635280 795870 32037 3493 33683 167626;167627;167628;167629;167630;167631;167632;167633;167634;167635;167636 168861;168862;168863;168864;168865;168866;168867;168868 168861 8 SVIFHNHLDYLAK QIATEKGQMEEQFWRSVIFHNHLDYLAKNG WRSVIFHNHLDYLAKNGYEYEESTKNQATK R S V A K N 1 0 1 1 0 0 0 0 2 1 2 1 0 1 0 1 0 0 1 1 0 0 13 0 1555.8147 O75717 O75717 732 744 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes yes 3 0.032656 29.689 By MS/MS 1 0.95081 1.0161 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95081 1.0161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10273000 4238400 6034900 0 0 0 0 0 0 10273000 4238400 6034900 0 0 0 0 0 0 0 0 0 32038 1693 33684 167637 168869 168869 1 SVIGHLQTK TRDMGGYSTTTDFIKSVIGHLQTKGSNL__ TTDFIKSVIGHLQTKGSNL___________ K S V T K G 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 981.56073 A0A087WZN1;O43837;A0A0D9SG66 A0A087WZN1 375 383 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 2 0.0011093 85.161 By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1.1559 1.1516 13.902 6 Median 1.222 1.1589 NaN 1 0 Median 1.3424 1.1443 NaN 1 0 Median 0.99196 1.037 17.557 2 0 Median 1.0935 0.91818 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.532 1.2779 NaN 1 0 Median 15053000 6442000 8611200 2237700 1033400 1204400 8586200 3664800 4921300 2389300 971690 1417600 427260 204940 222320 0 0 0 1412800 567160 845600 32039 96 33685 167638;167639;167640;167641;167642;167643 168870;168871;168872 168872 3 SVIIIGAGPAGLAAAR VGADQYLLPKDYHNKSVIIIGAGPAGLAAA VIIIGAGPAGLAAARQLHNFGIKVTVLEAK K S V A R Q 5 1 0 0 0 0 0 3 0 3 1 0 0 0 1 1 0 0 0 1 0 0 16 0 1435.8511 H0Y6H0;Q8NB78 H0Y6H0 384 399 KDM1B Lysine-specific histone demethylase 1B yes no 2 3.4173E-05 81.865 By MS/MS By matching 1 1 1.3912 1.3245 55.877 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83089 0.89217 NaN 1 0 Median 2.3294 1.9662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3257400 1552600 1704800 0 0 0 0 0 0 2914000 1500600 1413400 343370 52000 291370 0 0 0 0 0 0 32040 1155 33686 167644;167645 168873 168873 1 SVILEAFSSPSEEVK EVGHHIDLSGQLELKSVILEAFSSPSEEVK SVILEAFSSPSEEVKSAASYALGSISVGNL K S V V K S 1 0 0 0 0 0 3 0 0 1 1 1 0 1 1 4 0 0 0 2 0 0 15 0 1620.8247 Q86VP6;A0A0C4DGH5 Q86VP6 859 873 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 5.5663E-05 83.314 By MS/MS By matching By matching By matching By matching 1 1 2 1 1 0.87711 0.83937 9.2614 6 Median 0.86431 0.83101 NaN 1 0 Median 1.056 0.89651 NaN 1 0 Median 0.84263 0.89603 7.8213 2 0 Median 0.79795 0.72177 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98422 0.81302 NaN 1 0 Median 88137000 46098000 42039000 30336000 15949000 14387000 6462800 3135200 3327600 49573000 26229000 23345000 123340 55775 67561 0 0 0 1642100 729160 912960 32041 3288 33687 167646;167647;167648;167649;167650;167651 168874;168875 168874 2 SVILEGDREHSSGAQIPVDLSELK LGQIGCDSNGKLNNKSVILEGDREHSSGAQ HSSGAQIPVDLSELKEYSLFPGQVVIMEGI K S V L K E 1 1 0 2 0 1 3 2 1 2 3 1 0 0 1 4 0 0 0 2 0 0 24 1 2578.3239 Q14181;A0A3B3ITS5 Q14181 269 292 POLA2 DNA polymerase alpha subunit B yes no 3 0.0099417 19.975 By MS/MS By matching 1 1 0.94073 0.90604 2.679 2 Median 0.87879 0.88903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 0.92336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2870600 1284700 1585900 2504900 1110500 1394400 0 0 0 0 0 0 365770 174200 191570 0 0 0 0 0 0 32042 2862 33688 167652;167653 168876 168876 1 SVILHLLSQLK CDHKEDDLGAVEEQRSVILHLLSQLKLGMD EEQRSVILHLLSQLKLGMDLTRVVLPTFIL R S V L K L 0 0 0 0 0 1 0 0 1 1 4 1 0 0 0 2 0 0 0 1 0 0 11 0 1249.7758 Q9BXB4 Q9BXB4 368 378 OSBPL11 Oxysterol-binding protein-related protein 11 yes yes 2 0.00015337 82.749 By matching By MS/MS 1 5 1.0448 0.93655 24.781 6 Median 1.0449 1.061 NaN 1 0 Median 1.0448 0.91296 26.058 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15362000 7348900 8013300 907940 434410 473530 14454000 6914500 7539800 0 0 0 0 0 0 0 0 0 0 0 0 32043 3878 33689 167654;167655;167656;167657;167658;167659 168877;168878 168878 2 SVILISTVR DLKVGSVEEFQGQERSVILISTVRSSQSFV FQGQERSVILISTVRSSQSFVQLDLDFNLG R S V V R S 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 2 0 0 9 0 986.61243 Q9HCE1;Q5JR04 Q9HCE1 874 882 MOV10 Putative helicase MOV-10 yes no 2 0.019275 40.002 By matching By MS/MS 1 2 1.2095 1.0642 17.918 3 Median 1.0898 1.0642 NaN 1 0 Median 1.4034 1.2184 22.804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4738600 2242800 2495700 2859600 1513200 1346500 1878900 729670 1149300 0 0 0 0 0 0 0 0 0 0 0 0 32044 4029 33690 167660;167661;167662 168879 168879 1 SVIMHLLSQVR DRDDDAEAGSVEEHKSVIMHLLSQVRLGMD EEHKSVIMHLLSQVRLGMDLTKVVLPTFIL K S V V R L 0 1 0 0 0 1 0 0 1 1 2 0 1 0 0 2 0 0 0 2 0 0 11 0 1281.7227 Q96SU4 Q96SU4 373 383 OSBPL9 Oxysterol-binding protein-related protein 9 yes yes 2 0.00059752 66.435 By MS/MS By MS/MS 1 1 1.0758 0.98788 11.294 2 Median 1.0995 1.07 NaN 1 0 Median 1.0525 0.91206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6783300 3222100 3561200 3163200 1511200 1652000 3620100 1710900 1909200 0 0 0 0 0 0 0 0 0 0 0 0 32045 3738 33691 167663;167664 168880;168881 168880 2 SVINLLR MIVSGSAIMRSEDPRSVINLLRNVCSEAAQ IMRSEDPRSVINLLRNVCSEAAQKRSLD__ R S V L R N 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 7 0 813.50724 C9J6A7;Q96AT9;Q2QD12 C9J6A7 140 146 RPE;RPEL1 Ribulose-phosphate 3-epimerase;Ribulose-phosphate 3-epimerase-like protein 1 yes no 2 0.0017395 109.88 By MS/MS By MS/MS By matching 1 2 1 1.15 1.0398 18.59 4 Median 1.0802 1.0258 NaN 1 0 Median 1.2817 1.0949 5.3855 2 0 Median 0.79914 0.74642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20992000 10199000 10794000 17615000 8463300 9151300 2744200 1370300 1373900 633470 365040 268430 0 0 0 0 0 0 0 0 0 32046 679 33692 167665;167666;167667;167668 168882;168883;168884;168885 168883 4 SVIYHALSQK ______________________________ ______________________________ K S V Q K E 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 1 1 0 0 10 0 1144.6241 K7ERD7;O95707;K7ESH8;K7EK50 K7ERD7 3 12 POP4 Ribonuclease P protein subunit p29 yes no 2 0.0037749 55.549 By MS/MS By MS/MS 1 1 0.87342 0.83088 12.001 2 Median 0.79359 0.76328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96129 0.90447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8523500 4543600 3979800 1772600 998630 774010 0 0 0 6750800 3545000 3205800 0 0 0 0 0 0 0 0 0 32047 1398 33693 167669;167670 168886;168887;168888 168886 3 SVKEDSNLTLQEK AIRDAKTPDKMKKSKSVKEDSNLTLQEKKE SKSVKEDSNLTLQEKKEKIQTGLKKLTELG K S V E K K 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 2 1 0 0 1 0 0 13 1 1489.7624 P46940;H0YLE8 P46940 1443 1455 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 4.7711E-06 98.943 By MS/MS By MS/MS 4 3 1.066 1.0208 9.5834 7 Median 1.049 1.0128 13.251 4 0 Median 1.066 1.0234 1.0877 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37542000 18002000 19540000 24515000 11991000 12523000 13028000 6010800 7016700 0 0 0 0 0 0 0 0 0 0 0 0 32048 2350 33694 167671;167672;167673;167674;167675;167676;167677 168889;168890;168891;168892;168893;168894;168895;168896;168897;168898;168899;168900 168894 12 SVLADIKK EISSATKLRQLKAFKSVLADIKKAHLALEE RQLKAFKSVLADIKKAHLALEEDLNSEFRA K S V K K A 1 0 0 1 0 0 0 0 0 1 1 2 0 0 0 1 0 0 0 1 0 0 8 1 872.53312 P46100;A0A096LNW1;A0A096LNL9;A0A096LNN3 P46100 397 404 ATRX Transcriptional regulator ATRX yes no 2 0.031563 45.081 By matching By MS/MS 1 2 1.2628 1.1424 14.359 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96311 1.0327 NaN 1 0 Median 1.3928 1.2515 12.892 2 0 Median 7718000 3406800 4311300 0 0 0 0 0 0 0 0 0 0 0 0 5025400 2371600 2653800 2692700 1035200 1657500 32049 2339 33695 167678;167679;167680 168901 168901 1 SVLAETEGILQK DEMHTLLQLECEKYKSVLAETEGILQKLQR KYKSVLAETEGILQKLQRSVEQEENKWKVK K S V Q K L 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1286.7082 Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2 1141 1152 KTN1 Kinectin yes no 2 0.00047426 77.677 By MS/MS By MS/MS By MS/MS 2 1 1 1.1284 1.1206 17.903 4 Median 1.3334 1.2908 10.827 2 0 Median 1.034 0.91676 NaN 1 0 Median 0.98158 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32966000 15056000 17910000 22048000 9541800 12506000 2513000 1252200 1260800 8405000 4261700 4143400 0 0 0 0 0 0 0 0 0 32050 3280 33696 167681;167682;167683;167684 168902;168903;168904;168905;168906 168902 5 SVLAVENLLTLDR PASADSEAYIEKYLRSVLAVENLLTLDRLR LRSVLAVENLLTLDRLRQEVAVKEQLTGKG R S V D R L 1 1 1 1 0 0 1 0 0 0 4 0 0 0 0 1 1 0 0 2 0 0 13 0 1441.814 Q9NQT8 Q9NQT8 1346 1358 KIF13B Kinesin-like protein KIF13B yes yes 2 0.00067675 79.974 By MS/MS 1 0.48232 0.41251 NaN 1 Median NaN NaN NaN 0 0 Median 0.48232 0.41251 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4736600 3395700 1340900 0 0 0 4736600 3395700 1340900 0 0 0 0 0 0 0 0 0 0 0 0 32051 4068 33697 167685 168907 168907 1 SVLDAAQIVGLNCLR CVISVPSFFTDAERRSVLDAAQIVGLNCLR SVLDAAQIVGLNCLRLMNDMTAVALNYGIY R S V L R L 2 1 1 1 1 1 0 1 0 1 3 0 0 0 0 1 0 0 0 2 0 0 15 0 1627.8716 Q92598 Q92598 155 169 HSPH1 Heat shock protein 105 kDa yes yes 2 1.4999E-13 169.58 By MS/MS 2 0.66826 0.5706 43.466 2 Median NaN NaN NaN 0 0 Median 0.66826 0.5706 43.466 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10371000 5352900 5017800 0 0 0 10371000 5352900 5017800 0 0 0 0 0 0 0 0 0 0 0 0 32052 3541 33698 167686;167687 168908;168909;168910;168911 168909 4 SVLDKLSANQQNILK KVLDARGSNSLPLLRSVLDKLSANQQNILK SVLDKLSANQQNILKFIACNEIFLMPATVF R S V L K F 1 0 2 1 0 2 0 0 0 1 3 2 0 0 0 2 0 0 0 1 0 0 15 1 1669.9363 P57088;D6RAA6;H0Y8N0 P57088 144 158 TMEM33 Transmembrane protein 33 yes no 2;3 0.00017347 84.479 By MS/MS By matching 3 2 1.5215 1.3928 17.741 5 Median 1.2994 1.3217 24.298 3 0 Median 1.5772 1.472 7.8161 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42203000 14933000 27270000 36719000 13294000 23424000 5484900 1639100 3845800 0 0 0 0 0 0 0 0 0 0 0 0 32053 2516 33699 167688;167689;167690;167691;167692 168912;168913 168913 2 SVLEAQR AIQDMFPNMDQEVIRSVLEAQRGNKDAAIN NMDQEVIRSVLEAQRGNKDAAINSLLQMGE R S V Q R G 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 7 0 801.43447 Q9H0E2;E7EN89;F2Z2Y8 Q9H0E2 251 257 TOLLIP Toll-interacting protein yes no 2 0.047302 41.502 By MS/MS By matching By matching 1 1 1 1.0269 1.0202 3.4206 3 Median 1.0596 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91391 1.0202 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0269 1.0807 NaN 1 0 Median NaN NaN NaN 0 0 Median 1209600 602830 606730 508400 210810 297590 0 0 0 586020 328480 257540 0 0 0 115140 63541 51601 0 0 0 32054 3925 33700 167693;167694;167695 168914 168914 1 SVLELIPELNEK LLRNSRKQGKASTVKSVLELIPELNEKEEA TVKSVLELIPELNEKEEAYNSLMKSYVSEK K S V E K E 0 0 1 0 0 0 3 0 0 1 3 1 0 0 1 1 0 0 0 1 0 0 12 0 1382.7657 P42704 P42704 1306 1317 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial no no 2 6.1328E-06 117.7 By MS/MS By matching 1 1 1.2692 1.0916 16.509 2 Median NaN NaN NaN 0 0 Median 1.1358 0.97131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4182 1.2268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5080300 2194500 2885800 0 0 0 4875800 2156000 2719800 0 0 0 204540 38522 166020 0 0 0 0 0 0 32055 2315 33701 167696;167697 168915;168916 168916 2 SVLELIPELNEKEEAYNSLMK LLRNSRKQGKASTVKSVLELIPELNEKEEA PELNEKEEAYNSLMKSYVSEKDVTSAKALY K S V M K S 1 0 2 0 0 0 5 0 0 1 4 2 1 0 1 2 0 0 1 1 0 0 21 1 2448.2458 P42704 P42704 1306 1326 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial no no 3 5.246E-12 72.086 By MS/MS By matching 1 1 0.96849 0.95698 13.481 2 Median 0.8314 0.86997 NaN 1 0 Median 1.1282 1.0527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16804000 8505800 8298100 13539000 7041000 6498200 3264700 1464800 1799900 0 0 0 0 0 0 0 0 0 0 0 0 32056 2315 33702 167698;167699 168917;168918 168917 2 SVLEQTK EMCNDLLARVEPPLRSVLEQTKLKKEDIYA ARVEPPLRSVLEQTKLKKEDIYAVEIVGGA R S V T K L 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 7 0 803.43888 P34932;A0A087WYC1;A0A087WTS8 P34932 323 329 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.021555 58.981 By MS/MS 2 1.3436 1.1783 13.794 2 Median NaN NaN NaN 0 0 Median 1.3436 1.1783 13.794 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2067400 955590 1111800 0 0 0 2067400 955590 1111800 0 0 0 0 0 0 0 0 0 0 0 0 32057 2230 33703 167700;167701 168919;168920;168921 168919 3 SVLGDVGITEVFSDR LHLPKLSISETYDLKSVLGDVGITEVFSDR SVLGDVGITEVFSDRADLSGITKEQPLKVS K S V D R A 0 1 0 2 0 0 1 2 0 1 1 0 0 1 0 2 1 0 0 3 0 0 15 0 1592.8046 CON__P34955 CON__P34955 323 337 yes yes 2 5.8857E-123 245.58 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.050149 0.045515 144.84 8 Median 0.052272 0.051776 175.57 3 3 Median 0.037776 0.032955 73.906 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26237 0.26344 NaN 1 1 Median 0.34594 0.29771 NaN 1 1 Median 220400000 214680000 5712300 169270000 166560000 2703900 43521000 42418000 1103400 0 0 0 0 0 0 5636800 4438100 1198700 1972500 1266200 706290 + 32058 763 33704 167702;167703;167704;167705;167706;167707;167708;167709 168922;168923;168924;168925;168926;168927;168928;168929;168930;168931 168923 10 SVLGDVGITEVFSDRADLSGITK LHLPKLSISETYDLKSVLGDVGITEVFSDR TEVFSDRADLSGITKEQPLKVSKALHKAAL K S V T K E 1 1 0 3 0 0 1 3 0 2 2 1 0 1 0 3 2 0 0 3 0 0 23 1 2378.2329 CON__P34955 CON__P34955 323 345 yes yes 3 0.040088 19.044 By MS/MS 1 0.030838 0.030953 NaN 1 Median 0.030838 0.030953 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7921000 7760600 160350 7921000 7760600 160350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 32059 763 33705 167710 168932 168932 1 SVLGEADQK MSNHTATHILNFALRSVLGEADQKGSLVAP LNFALRSVLGEADQKGSLVAPDRLRFDFTA R S V Q K G 1 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 945.47673 P49588;H3BPK7 P49588 617 625 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.00086848 93.429 By MS/MS By MS/MS 2 2 1.0389 0.98833 5.1711 4 Median 1.0005 0.99344 5.1267 2 0 Median 1.1295 0.97056 6.9648 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37025000 17103000 19922000 5493700 2581400 2912300 31531000 14522000 17009000 0 0 0 0 0 0 0 0 0 0 0 0 32060 2385 33706 167711;167712;167713;167714 168933;168934;168935;168936;168937;168938;168939 168937 7 SVLGEADQKGSLVAPDR MSNHTATHILNFALRSVLGEADQKGSLVAP LGEADQKGSLVAPDRLRFDFTAKGAMSTQQ R S V D R L 2 1 0 2 0 1 1 2 0 0 2 1 0 0 1 2 0 0 0 2 0 0 17 1 1740.9006 P49588;H3BPK7 P49588 617 633 AARS Alanine--tRNA ligase, cytoplasmic yes no 3 0.01578 31.514 By MS/MS 1 1.6873 1.7569 NaN 1 Median 1.6873 1.7569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7292100 2915600 4376500 7292100 2915600 4376500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32061 2385 33707 167715 168940 168940 1 SVLGGQDQLR RTEQLQAVLCSTMEKSVLGGQDQLRVRVTE STMEKSVLGGQDQLRVRVTELEDEVRNLRK K S V L R V 0 1 0 1 0 2 0 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1071.5673 U3KQC1;A0A0A0MQU0;Q9BV38 U3KQC1 352 361 WDR18 WD repeat-containing protein 18 yes no 2 0.00040727 99.442 By matching By MS/MS By MS/MS 1 2 1 1.4687 1.265 58.496 4 Median NaN NaN NaN 0 0 Median 1.3657 1.167 NaN 1 0 Median 1.9525 2.0052 89.516 2 0 Median 1.5794 1.3712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47466000 12230000 35237000 0 0 0 1807200 730520 1076600 43173000 10947000 32226000 2486100 551700 1934400 0 0 0 0 0 0 32062 147 33708 167716;167717;167718;167719 168941;168942;168943;168944 168943 4 SVLHEVMEQQTLSIAK ICCIDEFDKMNESTRSVLHEVMEQQTLSIA VLHEVMEQQTLSIAKAGIICQLNARTSVLA R S V A K A 1 0 0 0 0 2 2 0 1 1 2 1 1 0 0 2 1 0 0 2 0 0 16 0 1811.9451 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6;A0A3B3IRR8 A0A3B3IU45 535 550 MCM4 DNA replication licensing factor MCM4 yes no 2;3 3.5933E-10 127.56 By MS/MS By matching By MS/MS By matching 4 2 4 2 0.95096 0.9606 19.739 12 Median 1.0022 0.96544 6.9726 4 0 Median 1.2127 1.0753 12.384 2 0 Median 0.80918 0.87707 13.182 4 2 Median 1.1027 0.93472 52.382 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136110000 67062000 69045000 55364000 25662000 29702000 7667100 3176600 4490500 71748000 37517000 34231000 1327600 706030 621580 0 0 0 0 0 0 32063 441 33709;33710 167720;167721;167722;167723;167724;167725;167726;167727;167728;167729;167730;167731 168945;168946;168947;168948;168949;168950;168951;168952;168953;168954 168953 197 10 SVLLEQPR SRPSSCLTNFLLNGRSVLLEQPRKSGSKVI NFLLNGRSVLLEQPRKSGSKVISHMLSSHG R S V P R K 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 940.53418 Q9NVM9;H0YH12 Q9NVM9 359 366 ASUN Protein asunder homolog yes no 2 0.027608 41.029 By matching By MS/MS By matching By MS/MS 2 1 2 1 0.9313 0.94011 14.453 6 Median 0.84975 0.81588 13.56 2 0 Median 1.1947 1.0352 NaN 1 0 Median 0.83926 0.89188 13.931 2 0 Median 1.2393 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21672000 10504000 11168000 10379000 4903900 5475200 3280900 1499900 1781000 6558200 3508400 3049800 1453800 591430 862350 0 0 0 0 0 0 32064 4136 33711 167732;167733;167734;167735;167736;167737 168955;168956 168956 2 SVLLLAYKPMEGNFEEIAR LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LAYKPMEGNFEEIARDFNPNWMSAVEILDD R S V A R D 2 1 1 0 0 0 3 1 0 1 3 1 1 1 1 1 0 0 1 1 0 0 19 1 2179.1347 Q16531;F5GY55 Q16531 929 947 DDB1 DNA damage-binding protein 1 yes no 2;3 5.5128E-14 107.75 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 5 2 1 0.88648 0.92835 25.458 13 Median 0.95132 0.98389 19.785 4 0 Median 0.88648 0.82884 NaN 1 0 Median 0.67361 0.76718 26.575 5 1 Median 1.3146 1.2634 21.145 2 0 Median 0.83466 0.92835 NaN 1 0 Median NaN NaN NaN 0 0 Median 39413000 21519000 17894000 12896000 6197500 6698200 4209300 2396300 1812900 20588000 12177000 8410200 939260 366710 572550 781480 381150 400330 0 0 0 32065 2985 33712;33713 167738;167739;167740;167741;167742;167743;167744;167745;167746;167747;167748;167749;167750 168957;168958;168959;168960;168961;168962;168963;168964;168965;168966 168961 1639 10 SVLLPTHR HRPRILEMDKEENRRSVLLPTHRRRGSFSS DKEENRRSVLLPTHRRRGSFSSENYWRKSY R S V H R R 0 1 0 0 0 0 0 0 1 0 2 0 0 0 1 1 1 0 0 1 0 0 8 0 921.5396 Q6P6C2;K7ER58 Q6P6C2 350 357 ALKBH5 RNA demethylase ALKBH5 yes no 2 0.012861 54.157 By MS/MS By MS/MS 1 1 1.0091 0.93849 11.833 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0268 1.0204 NaN 1 0 Median 0.99163 0.86316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3244900 1693900 1550900 0 0 0 0 0 0 1267400 644930 622470 1977500 1049000 928450 0 0 0 0 0 0 32066 3163 33714 167751;167752 168967;168968 168968 2 SVLLQER GVSDSCTGPVNALIRSVLLQERGGNNSFTH GPVNALIRSVLLQERGGNNSFTHEALTLKY R S V E R G 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 843.48142 P08240 P08240 35 41 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.016334 68.915 By MS/MS 1 1.2359 1.0714 NaN 1 Median NaN NaN NaN 0 0 Median 1.2359 1.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4130400 1736600 2393700 0 0 0 4130400 1736600 2393700 0 0 0 0 0 0 0 0 0 0 0 0 32067 1900 33715 167753 168969;168970 168970 2 SVLNNQLLEMK SRDEVTSHQKLEEERSVLNNQLLEMKKRES EEERSVLNNQLLEMKKRESKFIKDADEEKA R S V M K K 0 0 2 0 0 1 1 0 0 0 3 1 1 0 0 1 0 0 0 1 0 0 11 0 1287.6857 J3KP58;P30622;F5H0N7;A0A3B3ITA2 J3KP58 1082 1092 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 0.0020024 78.934 By MS/MS 1 1.8958 1.832 NaN 1 Median 1.8958 1.832 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8210300 3198200 5012000 8210300 3198200 5012000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32068 1308 33716 167754 168971 168971 1 SVLNTQPEQTNAGEVASSLSSTEIRR SVASKTEVKKTRRPRSVLNTQPEQTNAGEV AGEVASSLSSTEIRRHSQRRHTSAEEEEPP R S V R R H 2 2 2 0 0 2 3 1 0 1 2 0 0 0 1 5 3 0 0 2 0 0 26 1 2773.3842 Q9BZ95 Q9BZ95 424 449 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes yes 3 0.057067 6.1606 By MS/MS 3 0.53813 0.64313 23.538 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53813 0.64313 23.538 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13474000 8859800 4614500 0 0 0 0 0 0 13474000 8859800 4614500 0 0 0 0 0 0 0 0 0 32069 3896 33717 167755;167756;167757 168972 168972 1 SVLRPAVLQAPQPK PSAGLPSQKPKEQQRSVLRPAVLQAPQPKA RSVLRPAVLQAPQPKALSQTVPSSGTNGVS R S V P K A 2 1 0 0 0 2 0 0 0 0 2 1 0 0 3 1 0 0 0 2 0 0 14 1 1502.8933 B7Z7F3;Q9H6Z4;K7EN31 B7Z7F3 102 115 RANBP3 Ran-binding protein 3 yes no 2;3 1.0783E-07 107.34 By MS/MS By MS/MS 2 3 0.61806 0.59035 10.555 4 Median 0.56548 0.56674 5.4373 2 0 Median 0.70666 0.64379 11.922 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60045000 36684000 23361000 35490000 22314000 13176000 24555000 14370000 10185000 0 0 0 0 0 0 0 0 0 0 0 0 32070 636 33718 167758;167759;167760;167761;167762 168973;168974;168975;168976;168977;168978;168979;168980 168975 8 SVLTLANAGR CAMTGVDCCISSFDKSVLTLANAGRNSASP SSFDKSVLTLANAGRNSASPKHSLNGESRK K S V G R N 2 1 1 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1000.5665 J3KRA9;Q96Q15;H3BQN7 J3KRA9 1035 1044 SMG1 Serine/threonine-protein kinase SMG1 yes no 2 0.012353 60.436 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32071 1325 33719 167763 168981 168981 1 SVLVDFLIGSGLK FVGGDDFKSGQTKVKSVLVDFLIGSGLKTM VKSVLVDFLIGSGLKTMSIVSYNHLGNNDG K S V L K T 0 0 0 1 0 0 0 2 0 1 3 1 0 1 0 2 0 0 0 2 0 0 13 0 1346.781 Q9NPH2 Q9NPH2 313 325 ISYNA1 Inositol-3-phosphate synthase 1 yes yes 2 0.0014995 52.79 By MS/MS By matching 1 2 0.84626 0.7316 24.155 3 Median 0.62192 0.59439 NaN 1 0 Median 0.97227 0.83898 19.367 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9085800 5089800 3996100 5467500 3379100 2088400 3618300 1710700 1907600 0 0 0 0 0 0 0 0 0 0 0 0 32072 4052 33720 167764;167765;167766 168982;168983 168983 2 SVLVPHGSK DYGKWELYIPPKQNKSVLVPHGSKLKVVIT PPKQNKSVLVPHGSKLKVVITSKSGEILYR K S V S K L 0 0 0 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 2 0 0 9 0 922.52362 Q04446;E9PGM4 Q04446 133 141 GBE1 1,4-alpha-glucan-branching enzyme yes no 2 0.027065 51.346 By MS/MS 1 1.268 1.095 NaN 1 Median NaN NaN NaN 0 0 Median 1.268 1.095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1474900 603500 871400 0 0 0 1474900 603500 871400 0 0 0 0 0 0 0 0 0 0 0 0 32073 2711 33721 167767 168984 168984 1 SVLVSAGNVK LSSQSHYDFGLRALKSVLVSAGNVKRERIQ LRALKSVLVSAGNVKRERIQKIKREKEERG K S V V K R 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 2 0 0 0 3 0 0 10 0 972.5604 Q14204;A0A2R8YFZ7 Q14204 2095 2104 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00062794 113.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1714 1.1111 7.7739 5 Median 1.1368 1.1337 NaN 1 0 Median 1.2432 1.1111 NaN 1 0 Median 0.98728 1.0549 NaN 1 0 Median 1.2515 1.2333 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1714 1.0036 NaN 1 0 Median 71278000 31399000 39879000 6385100 3130300 3254900 41150000 17347000 23803000 13625000 6240600 7384900 6800900 3121600 3679200 0 0 0 3317100 1560000 1757200 32074 2865 33722 167768;167769;167770;167771;167772 168985;168986;168987;168988;168989;168990;168991;168992 168988 8 SVLVSAGNVKR LSSQSHYDFGLRALKSVLVSAGNVKRERIQ RALKSVLVSAGNVKRERIQKIKREKEERGE K S V K R E 1 1 1 0 0 0 0 1 0 0 1 1 0 0 0 2 0 0 0 3 0 0 11 1 1128.6615 Q14204;A0A2R8YFZ7 Q14204 2095 2105 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00021253 88.948 By MS/MS By MS/MS By matching By matching By MS/MS 1 1 1 1 1 1.1514 1.1859 7.0889 5 Median 1.1514 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0541 1.2216 NaN 1 0 Median 1.3481 1.2557 NaN 1 0 Median 1.0153 1.1486 NaN 1 0 Median 1.1767 1.0452 NaN 1 0 Median 16760000 7682600 9077300 5091800 2273200 2818600 0 0 0 8683400 4012400 4670900 342290 151300 190990 969420 461440 507980 1673100 784300 888780 32075 2865 33723 167773;167774;167775;167776;167777 168993;168994;168995;168996;168997;168998 168996 6 SVLWWLPVEK FVSDELRNKATQPMKSVLWWLPVEKAFWRQ TQPMKSVLWWLPVEKAFWRQPAGPGSGIRE K S V E K A 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 0 2 0 2 0 0 10 0 1255.6965 J3KQJ1;Q8NBJ7;E9PBT8;C9JL30;C9J660;F8WA42;F8WEX5;E9PG02 J3KQJ1 133 142 SUMF2 Sulfatase-modifying factor 2 yes no 2 0.044206 29.81 By matching By MS/MS By matching 1 1 1 1.349 1.1402 15.242 3 Median NaN NaN NaN 0 0 Median 1.349 1.1402 NaN 1 0 Median 0.90767 0.89009 NaN 1 0 Median 1.3859 1.1751 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1338600 617150 721410 0 0 0 244090 99623 144470 869350 415340 454010 225120 102190 122940 0 0 0 0 0 0 32076 1319 33724 167778;167779;167780 168999 168999 1 SVMDATQIAGLNCLR CVVSVPCFYTDAERRSVMDATQIAGLNCLR SVMDATQIAGLNCLRLMNETTAVALAYGIY R S V L R L 2 1 1 1 1 1 0 1 0 1 2 0 1 0 0 1 1 0 0 1 0 0 15 0 1647.8073 P34932;A0A087WYC1;A0A087WTS8 P34932 155 169 HSPA4 Heat shock 70 kDa protein 4 yes no 2 1.9445E-05 72.006 By MS/MS 1 1.2735 1.2373 NaN 1 Median 1.2735 1.2373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3345800 1302900 2042900 3345800 1302900 2042900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32077 2230 33725 167781 169000 169000 1 SVMEELKR YKNDVMIRKEAYVHKSVMEELKRIIDDSEI KEAYVHKSVMEELKRIIDDSEITKEDDALW K S V K R I 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 8 1 990.51682 P61326;F5H6P7;F5H3U9;Q96A72;F5H6N1 Q96A72 57 64 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 0.0039234 105.12 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 2 1.4059 1.2249 7.6917 7 Median NaN NaN NaN 0 0 Median 1.4436 1.2746 NaN 1 0 Median 1.1823 1.2249 NaN 1 0 Median 1.4144 1.1502 NaN 1 0 Median 1.1578 1.2625 4.7565 2 0 Median 1.5856 1.2589 15.992 2 0 Median 26540000 11568000 14972000 0 0 0 2389000 797310 1591600 14831000 6790100 8040900 2200800 861430 1339400 3901200 1833600 2067600 3217700 1285200 1932500 32078 2556;3596 33726 167782;167783;167784;167785;167786;167787;167788 169001;169002;169003;169004;169005;169006;169007;169008 169003 8 SVMIDEDMTAR HTLEPLIPRHALNSRSVMIDEDMTARISMA LNSRSVMIDEDMTARISMADVKFSFQCPGR R S V A R I 1 1 0 2 0 0 1 0 0 1 0 0 2 0 0 1 1 0 0 1 0 0 11 0 1266.5584 Q13418;A0A0A0MTH3 Q13418 324 334 ILK Integrin-linked protein kinase yes no 2 0.00013373 98.044 By MS/MS By MS/MS By MS/MS 1 1 2 0.96929 0.86594 8.0435 4 Median 0.87142 0.8693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0015 0.97948 NaN 1 0 Median 0.96929 0.83452 4.6785 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37672000 18635000 19037000 3388400 1980300 1408100 0 0 0 24185000 11520000 12666000 10099000 5135400 4963200 0 0 0 0 0 0 32079 190 33727 167789;167790;167791;167792 169009;169010;169011;169012;169013;169014 169014 5 SVMTEEYK SFGTQLPPMHQQQSRSVMTEEYKVPDGMVG MHQQQSRSVMTEEYKVPDGMVGFIIGRGGE R S V Y K V 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 1 0 1 1 0 0 8 0 985.44265 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 99 106 FUBP1 Far upstream element-binding protein 1 no no 2 0.0052175 77.058 By matching By MS/MS By MS/MS 1 1 1 1.0671 1.0823 12.197 3 Median 1.122 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0671 1.0823 NaN 1 0 Median 1.0278 0.89125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14774000 6907400 7866300 976900 454750 522140 0 0 0 11128000 5083300 6044400 2669100 1369400 1299800 0 0 0 0 0 0 32080 3599;723 33728 167793;167794;167795 169015;169016;169017;169018 169016 4 SVMTEEYKVPDGMVGFIIGR SFGTQLPPMHQQQSRSVMTEEYKVPDGMVG EYKVPDGMVGFIIGRGGEQISRIQQESGCK R S V G R G 0 1 0 1 0 0 2 3 0 2 0 1 2 1 1 1 1 0 1 3 0 0 20 1 2227.1017 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 99 118 FUBP1 Far upstream element-binding protein 1 no no 3 8.9303E-05 37.624 By MS/MS By MS/MS By MS/MS 1 2 2 1.0754 1.1416 73.22 5 Median 1.0087 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2557 2.5452 113.39 2 0 Median NaN NaN NaN 0 0 Median 1.0596 1.1342 5.9141 2 0 Median NaN NaN NaN 0 0 Median 7730700 3458600 4272100 1495100 720250 774850 0 0 0 4993400 2136600 2856800 0 0 0 1242100 601690 640450 0 0 0 32081 3599;723 33729 167796;167797;167798;167799;167800 169019;169020;169021;169022;169023;169024 169022 6 SVNDQPSGNLPFLKPDDIQYFDK GMTGFHMQTEDRTMKSVNDQPSGNLPFLKP NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ K S V D K L 0 0 2 4 0 2 0 1 0 1 2 2 0 2 3 2 0 0 1 1 0 0 23 1 2636.2758 O75533 O75533 455 477 SF3B1 Splicing factor 3B subunit 1 yes yes 3 9.3224E-13 62.064 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 3 0.64305 0.70704 7.6957 8 Median 0.64336 0.6776 NaN 1 1 Median 0.77815 0.73237 NaN 1 0 Median 0.64174 0.74193 9.249 2 0 Median 0.76761 0.7312 NaN 1 0 Median 0.63975 0.70381 8.3253 3 0 Plateau NaN NaN NaN 0 0 Median 71065000 42443000 28621000 4320000 2812500 1507500 892390 494070 398320 33301000 20055000 13246000 2107300 1157800 949560 30444000 17924000 12520000 0 0 0 32082 1683 33730 167801;167802;167803;167804;167805;167806;167807;167808 169025;169026;169027;169028;169029;169030;169031;169032;169033;169034;169035 169033 11 SVNELIYK RIVEPYIAWGYPNLKSVNELIYKRGYGKIN WGYPNLKSVNELIYKRGYGKINKKRIALTD K S V Y K R 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 964.52295 P18124;A8MUD9 P18124 149 156 RPL7 60S ribosomal protein L7 yes no 2 0.0035475 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 3 1.2343 1.1103 41.566 10 Median 1.131 1.0223 NaN 1 0 Median 1.1236 0.9408 NaN 1 0 Median 0.76505 0.64136 75.62 2 1 Median 1.339 1.1211 NaN 1 0 Median 1.4483 1.5061 38.09 2 0 Median 1.3872 1.1458 11.081 3 0 Median 232870000 105480000 127400000 120250000 55263000 64991000 37241000 16939000 20302000 10253000 4917900 5335100 13144000 5368800 7775300 39069000 17503000 21566000 12912000 5486200 7426300 32083 2056 33731 167809;167810;167811;167812;167813;167814;167815;167816;167817;167818 169036;169037;169038;169039;169040;169041;169042;169043;169044;169045;169046 169037 11 SVNELIYKR RIVEPYIAWGYPNLKSVNELIYKRGYGKIN GYPNLKSVNELIYKRGYGKINKKRIALTDN K S V K R G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 9 1 1120.6241 P18124;A8MUD9 P18124 149 157 RPL7 60S ribosomal protein L7 yes no 2 1.2785E-06 159.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 2 1.1813 1.1728 15.128 12 Median 0.95784 0.95994 26.345 2 0 Median 1.0938 0.9907 12.367 2 0 Median 1.1774 1.2561 0.57572 2 0 Median 1.3881 1.2687 10.617 2 0 Median 1.1493 1.2368 0.49283 2 0 Median 1.2633 1.1281 4.9771 2 0 Median 246620000 109420000 137200000 135630000 60318000 75313000 31643000 13913000 17730000 9059600 3929800 5129800 10675000 4423200 6251700 54432000 24565000 29867000 5185300 2272900 2912300 32084 2056 33732 167819;167820;167821;167822;167823;167824;167825;167826;167827;167828;167829;167830 169047;169048;169049;169050;169051;169052;169053;169054;169055;169056;169057;169058;169059;169060;169061;169062 169048 16 SVNESLNNLFITEEDYQALR LVKPYLRSVQNHNNKSVNESLNNLFITEED LNNLFITEEDYQALRTSIDAYDNFDNISLA K S V L R T 1 1 3 1 0 1 3 0 0 1 3 0 0 1 0 2 1 0 1 1 0 0 20 0 2354.139 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1466 1485 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 4.7992E-19 95.666 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 8 3 4 2 2 1 1.1558 1.0792 23.407 20 Median 1.1739 1.155 17.184 8 0 Median 1.3274 1.1337 16.609 3 1 Median 0.85851 0.94584 33.994 4 0 Median 1.654 1.4337 39.529 2 0 Median 0.89525 0.92589 21.025 2 0 Median 1.1677 0.98786 NaN 1 0 Median 79363000 34442000 44921000 48641000 20178000 28463000 19494000 8686000 10808000 8325800 4187000 4138800 241580 110910 130670 2585100 1240000 1345100 75259 39583 35676 32085 44 33733 167831;167832;167833;167834;167835;167836;167837;167838;167839;167840;167841;167842;167843;167844;167845;167846;167847;167848;167849;167850 169063;169064;169065;169066;169067;169068;169069;169070;169071;169072;169073;169074;169075;169076;169077;169078;169079;169080;169081;169082 169082 20 SVNFDMTSK DEVKKEREGLENDLKSVNFDMTSKFLTALA LENDLKSVNFDMTSKFLTALAQDGVINEEA K S V S K F 0 0 1 1 0 0 0 0 0 0 0 1 1 1 0 2 1 0 0 1 0 0 9 0 1027.4644 Q8WUM4 Q8WUM4 575 583 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.0030194 67.993 By matching By MS/MS By matching 1 1 1 1.1249 1.112 21.177 3 Plateau 1.1249 1.112 NaN 1 0 Median 1.2387 1.0958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91597 0.7651 NaN 1 0 Median 5787000 2585900 3201200 3226000 1425600 1800400 2034100 905310 1128800 0 0 0 0 0 0 0 0 0 526940 255000 271940 32086 3493 33734 167851;167852;167853 169083 169083 1 SVNFSLTPNEIK PSPPSPLEKTPLGERSVNFSLTPNEIKVSA GERSVNFSLTPNEIKVSAEAEVAPVSPEVT R S V I K V 0 0 2 0 0 0 1 0 0 1 1 1 0 1 1 2 1 0 0 1 0 0 12 0 1347.7034 P46821 P46821 1276 1287 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 1.5725E-14 182.16 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 0.99005 0.99296 16.784 9 Median 0.99005 0.99296 16.319 3 0 Plateau 0.91247 0.79558 5.5701 2 0 Median 1.0408 1.0995 4.4934 2 0 Median 1.128 1.0603 2.9629 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84269000 41998000 42271000 32881000 17083000 15798000 3893300 1955100 1938200 41574000 20193000 21380000 5921100 2767000 3154100 0 0 0 0 0 0 32087 2347 33735 167854;167855;167856;167857;167858;167859;167860;167861;167862 169084;169085;169086;169087;169088;169089;169090;169091;169092;169093 169089 10 SVNGLAFYDWDNTELIR FGAESIYGGFLLGVRSVNGLAFYDWDNTEL NGLAFYDWDNTELIRRIEIQPKHIFWSDSG R S V I R R 1 1 2 2 0 0 1 1 0 1 2 0 0 1 0 1 1 1 1 1 0 0 17 0 2011.964 P35606;H0Y938 P35606 443 459 COPB2 Coatomer subunit beta yes no 2 0.0046142 31.228 By MS/MS By matching 2 1 0.91623 0.92496 13.806 3 Median 0.94171 0.95159 4.0154 2 0 Median 0.85154 0.75304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3951200 1799000 2152200 2684800 1248700 1436100 1266400 550330 716110 0 0 0 0 0 0 0 0 0 0 0 0 32088 2246 33736 167863;167864;167865 169094;169095;169096 169096 3 SVNLLVVK DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ EGQQVIRSVNLLVVKVLEKSDQTNILSALL R S V V K V 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 3 0 0 8 0 870.55385 Q14008 Q14008 1667 1674 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.004801 79.469 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 3 2 4 1 3 1.2496 1.1242 21.301 14 Median 1.2566 1.1851 NaN 1 0 Median 1.1135 0.95612 25.881 3 0 Median 1.5333 1.646 25.782 2 0 Median 1.2165 1.0742 7.8352 4 0 Median 1.4106 1.4815 NaN 1 0 Median 1.3304 1.1147 7.0319 3 0 Median 22816000 9805100 13010000 1977000 789080 1187900 2966700 1337200 1629500 11551000 4858500 6692300 3140400 1457100 1683300 1296500 501650 794870 1884100 861560 1022500 32089 2850 33737 167866;167867;167868;167869;167870;167871;167872;167873;167874;167875;167876;167877;167878;167879 169097;169098;169099;169100;169101 169098 5 SVNSAGLHTVQR YSSRFSPDSQYIDNRSVNSAGLHTVQRAPR DNRSVNSAGLHTVQRAPRLNHPPEQIDSHS R S V Q R A 1 1 1 0 0 1 0 1 1 0 1 0 0 0 0 2 1 0 0 2 0 0 12 0 1267.6633 F5GZI3;Q5VWU8;Q5VWV2;Q8TEW0 F5GZI3 123 134 PARD3 Partitioning defective 3 homolog yes no 3 0.029814 20.857 By MS/MS 1 1.7425 1.5379 NaN 1 Median NaN NaN NaN 0 0 Median 1.7425 1.5379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 916560 375790 540770 0 0 0 916560 375790 540770 0 0 0 0 0 0 0 0 0 0 0 0 32090 1015 33738 167880 169102 169102 1 SVNVKPLVTHR YCNTWPVAISMLASKSVNVKPLVTHRFPLE LASKSVNVKPLVTHRFPLEKALEAFETFKK K S V H R F 0 1 1 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 3 0 0 11 1 1248.7303 Q00796;H0YLA4 Q00796 315 325 SORD Sorbitol dehydrogenase yes no 3 0.00010254 72.089 By MS/MS By MS/MS By MS/MS 1 2 2 0.92828 0.99452 4.5102 5 Median 0.92828 0.99452 NaN 1 0 Median 1.1293 1.0501 5.6124 2 1 Median 0.87657 0.98081 0.16859 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17577000 8442000 9134600 5818100 2946400 2871700 9057500 4070700 4986800 2701000 1424900 1276100 0 0 0 0 0 0 0 0 0 32091 2679 33739 167881;167882;167883;167884;167885 169103;169104;169105;169106;169107;169108 169107 6 SVNVNAASGGVQNSGIVR LNKGCSNKPTTVNKRSVNVNAASGGVQNSG VNAASGGVQNSGIVREAPATSIATVLPQPM R S V V R E 2 1 3 0 0 1 0 3 0 1 0 0 0 0 0 3 0 0 0 4 0 0 18 0 1727.8915 Q8NHV4 Q8NHV4 325 342 NEDD1 Protein NEDD1 yes yes 2 1.7537E-12 138.42 By MS/MS By matching By MS/MS By MS/MS 3 1 1 1 1.0459 0.98247 16.27 6 Median 0.85265 0.85181 19.326 3 0 Median 1.0689 0.92207 NaN 1 0 Median 1.0233 1.0468 NaN 1 0 Median 1.4139 1.1811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21565000 10470000 11095000 10338000 5311800 5025900 1470300 706950 763320 7592000 3542800 4049200 2165000 908730 1256300 0 0 0 0 0 0 32092 3446 33740 167886;167887;167888;167889;167890;167891 169109;169110;169111;169112;169113 169111 5 SVPAFIDISEEDQAAELR ______________________________ AFIDISEEDQAAELRAYLKSKGAEISEENS M S V L R A 3 1 0 2 0 1 3 0 0 2 1 0 0 1 1 2 0 0 0 1 0 0 18 0 1988.9691 Q7L2H7;E9PRI2;E7ESM3 Q7L2H7 2 19 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 0.00015952 45.915 By matching By matching By MS/MS 1 1 1 0.94131 0.92667 15.812 3 Median 0.94131 0.94679 NaN 1 0 Median 0.83183 0.71273 NaN 1 0 Median 0.96572 0.92667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3606000 2111800 1494200 153310 82835 70475 2026100 1314100 711950 1426700 714860 711790 0 0 0 0 0 0 0 0 0 32093 3221 33741 167892;167893;167894 169114;169115 169115 2 SVPDEIILLR LNSILVLDLRDNKLKSVPDEIILLRSLERL DNKLKSVPDEIILLRSLERLDLSNNDISSL K S V L R S 0 1 0 1 0 0 1 0 0 2 2 0 0 0 1 1 0 0 0 1 0 0 10 0 1153.6707 Q9H9A6 Q9H9A6 303 312 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 2 0.011083 43.083 By matching By MS/MS By matching 1 1 1 1.2069 1.0646 7.7701 3 Median NaN NaN NaN 0 0 Median 1.2069 1.0646 NaN 1 0 Median 0.87986 0.93139 NaN 1 0 Median 1.2241 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4006100 2164000 1842100 0 0 0 557080 259800 297280 3343500 1859200 1484300 105480 44973 60508 0 0 0 0 0 0 32094 3996 33742 167895;167896;167897 169116;169117 169117 2 SVPEDDGHALLAER VVLPSEEEGGGAGTKSVPEDDGHALLAERI KSVPEDDGHALLAERIEKSLVEPKEDEKGD K S V E R I 2 1 0 2 0 0 2 1 1 0 2 0 0 0 1 1 0 0 0 1 0 0 14 0 1507.7267 Q02952 Q02952 1674 1687 AKAP12 A-kinase anchor protein 12 yes yes 2;3 6.1735E-08 102.4 By MS/MS By MS/MS 3 1 0.89276 0.86402 25.482 4 Median 1.0932 1.0715 22.333 3 0 Plateau 0.85645 0.6857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43886000 20724000 23162000 26647000 11805000 14842000 17239000 8919800 8319600 0 0 0 0 0 0 0 0 0 0 0 0 32095 2705 33743 167898;167899;167900;167901 169118;169119;169120;169121;169122 169121 5 SVPGTTSSPLVGDISPK NPMYIHTSVSQDFSRSVPGTTSSPLVGDIS PGTTSSPLVGDISPKSSPHEVKFQMQRKSE R S V P K S 0 0 0 1 0 0 0 2 0 1 1 1 0 0 3 4 2 0 0 2 0 0 17 0 1640.8621 Q9UQR0;B4DRC2;H0Y6S1 Q9UQR0 576 592 SCML2 Sex comb on midleg-like protein 2 yes no 2 2.6204E-10 100.55 By MS/MS 2 0.65165 0.68162 36.603 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65165 0.68162 36.603 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27905000 18250000 9655400 0 0 0 0 0 0 27905000 18250000 9655400 0 0 0 0 0 0 0 0 0 32096 4363 33744 167902;167903 169123;169124;169125;169126;169127 169125 5 SVPHLQK KGTDVPKWISIMTERSVPHLQKVFDRYKSY WISIMTERSVPHLQKVFDRYKSYSPYDMLE R S V Q K V 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 1 0 0 0 1 0 0 7 0 807.46029 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 221 227 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.016999 66.994 By MS/MS By MS/MS By MS/MS 2 1 2 1.0532 0.8919 10.06 5 Median NaN NaN NaN 0 0 Median 0.97036 0.82275 10.345 2 0 Median 1.0486 1.0035 NaN 1 0 Median 1.0845 0.91612 3.7901 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16501000 8237700 8263600 0 0 0 8837700 4566000 4271800 4042400 1949000 2093400 3621100 1722700 1898400 0 0 0 0 0 0 32097 1885 33745 167904;167905;167906;167907;167908 169128;169129;169130;169131;169132;169133;169134;169135;169136;169137;169138;169139;169140;169141 169134 14 SVPHLQKVFDR KGTDVPKWISIMTERSVPHLQKVFDRYKSY MTERSVPHLQKVFDRYKSYSPYDMLESIRK R S V D R Y 0 1 0 1 0 1 0 0 1 0 1 1 0 1 1 1 0 0 0 2 0 0 11 1 1324.7252 P07355;H0YN42;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 221 231 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 3 0.00020733 65.395 By matching By matching By MS/MS 1 1 1 1.2483 1.3663 23.923 3 Median 1.4039 1.5018 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2483 1.3663 NaN 1 0 Median 1.0897 0.95427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5332200 2541800 2790400 1325100 688210 636920 0 0 0 2256300 1052500 1203800 1750800 801080 949720 0 0 0 0 0 0 32098 1885 33746 167909;167910;167911 169142;169143 169142 2 SVPLALQR KAVYMMPTEGDDSSKSVPLALQRVFYELQH EGDDSSKSVPLALQRVFYELQHSDKPVGTK K S V Q R V 1 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 882.5287 Q93009;H3BND8;F5H2X1 Q93009 255 262 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0032511 99.919 By MS/MS By MS/MS By MS/MS 1 1 1 1.059 0.94839 3.8184 3 Median NaN NaN NaN 0 0 Median 1.059 0.89155 NaN 1 0 Median 0.86932 0.95596 NaN 1 0 Median 1.1155 0.94839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19004000 9298200 9706000 0 0 0 5899900 2703800 3196100 9568700 4963900 4604800 3535600 1630500 1905000 0 0 0 0 0 0 32099 3574 33747 167912;167913;167914 169144;169145;169146;169147;169148;169149 169144 6 SVPLATAPMAEQR QQYTLEPSEKPFDLKSVPLATAPMAEQRTE LKSVPLATAPMAEQRTESTPITAVKQPEKV K S V Q R T 3 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 0 1 0 0 13 0 1369.7024 Q9Y678 Q9Y678 578 590 COPG1 Coatomer subunit gamma-1 yes yes 2 3.2754E-05 91.937 By MS/MS 2 0.69237 0.66425 8.1905 2 Median 0.69237 0.66425 8.1905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16917000 10152000 6765000 16917000 10152000 6765000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32100 4481 33748 167915;167916 169150;169151;169152;169153 169150 4 SVPLGHTHHLAK SYSREVMPLLLAYLKSVPLGHTHHLAKACY YLKSVPLGHTHHLAKACYALENFVENLGPK K S V A K A 1 0 0 0 0 0 0 1 3 0 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1295.7099 Q8TEX9;H0YN14 Q8TEX9 446 457 IPO4 Importin-4 yes no 3 0.0010976 44.564 By MS/MS 2 0.90837 0.8084 1.637 2 Median NaN NaN NaN 0 0 Median 0.90837 0.8084 1.637 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2558200 1331400 1226800 0 0 0 2558200 1331400 1226800 0 0 0 0 0 0 0 0 0 0 0 0 32101 3480 33749 167917;167918 169154 169154 1 SVPNQPSTNEILQAVLK AIACVVTACSAELEKSVPNQPSTNEILQAV PNQPSTNEILQAVLKECSKENVKYKIVAIS K S V L K E 1 0 2 0 0 2 1 0 0 1 2 1 0 0 2 2 1 0 0 2 0 0 17 0 1836.9945 Q5VYK3;J3KN16;F6XAQ5 Q5VYK3 1606 1622 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0014341 37.426 By MS/MS By MS/MS 1 1 0.9245 0.85416 16.266 2 Median 0.99701 0.95827 NaN 1 0 Median 0.85726 0.76135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7439200 3841600 3597600 4637700 2256700 2380900 2801500 1584800 1216600 0 0 0 0 0 0 0 0 0 0 0 0 32102 3116 33750 167919;167920 169155;169156 169156 2 SVPTSTVFYPSDGVATEK DGPSQMALEDLAMFRSVPTSTVFYPSDGVA TSTVFYPSDGVATEKAVELAANTKGICFIR R S V E K A 1 0 0 1 0 0 1 1 0 0 0 1 0 1 2 3 3 0 1 3 0 0 18 0 1883.9153 P29401;A0A0B4J1R6 P29401 439 456 TKT Transketolase yes no 2 5.2759E-08 94.09 By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 1 0.75601 0.69725 16.14 11 Median 0.74347 0.68322 11.493 5 0 Median 0.80963 0.69725 1.6901 3 0 Median 0.59209 0.57297 37.185 2 0 Median 0.87812 0.74823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 237140000 131140000 106000000 185860000 103160000 82700000 9872800 5280400 4592300 38691000 21491000 17201000 2718600 1206900 1511700 0 0 0 0 0 0 32103 2173 33751 167921;167922;167923;167924;167925;167926;167927;167928;167929;167930;167931 169157;169158;169159;169160;169161;169162;169163;169164;169165;169166;169167;169168;169169;169170;169171;169172;169173;169174;169175 169162 19 SVPTWLK APGKGLSQSALPYRRSVPTWLKLTSDDVKE QSALPYRRSVPTWLKLTSDDVKEQIYKLAK R S V L K L 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 7 0 829.46979 P62277;J3KMX5;E9PS50 P62277 21 27 RPS13 40S ribosomal protein S13 yes no 2 0.018479 62.714 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 3 3 2 2 1.0513 0.96078 10.991 14 Median 0.94875 0.86546 11.462 2 0 Median 1.1256 0.95024 7.4001 2 0 Median 0.88712 0.90166 5.6248 3 0 Median 1.4081 1.1576 7.3482 3 0 Median 0.9008 0.93457 2.6569 2 0 Median 1.2872 1.0367 9.4972 2 0 Median 159520000 78361000 81159000 76326000 37701000 38624000 62145000 29760000 32385000 8276500 4566500 3710100 1625200 655070 970140 2797600 1442500 1355100 8350200 4235600 4114600 32104 2580 33752 167932;167933;167934;167935;167936;167937;167938;167939;167940;167941;167942;167943;167944;167945 169176;169177;169178;169179;169180;169181;169182 169176 7 SVPVNNLPERSPTDSPR SPVDSGTILREPTTKSVPVNNLPERSPTDS PVNNLPERSPTDSPREGLRVKRGRLVPSPK K S V P R E 0 2 2 1 0 0 1 0 0 0 1 0 0 0 4 3 1 0 0 2 0 0 17 1 1863.9439 P49454 P49454 3069 3085 CENPF Centromere protein F yes yes 3 0.060759 19.297 By MS/MS 1 0.32522 0.35742 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32522 0.35742 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1825800 1484700 341040 0 0 0 0 0 0 1825800 1484700 341040 0 0 0 0 0 0 0 0 0 32105 2383 33753 167946 169183 169183 1 SVPVPLQEAPQQRPVVPPR RAPPRPAKTTDPVSKSVPVPLQEAPQQRPV PLQEAPQQRPVVPPRRPPPPKKTSSSSRPL K S V P R R 1 2 0 0 0 3 1 0 0 0 1 0 0 0 6 1 0 0 0 4 0 0 19 1 2093.1746 A1X283 A1X283 742 760 SH3PXD2B SH3 and PX domain-containing protein 2B yes yes 3 1.047E-06 53.278 By MS/MS By MS/MS 2 1 0.38814 0.44849 34.245 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3718 0.44075 2.4611 2 0 Median 0.81411 0.79701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9930400 7046800 2883600 0 0 0 0 0 0 8229500 6176000 2053500 1701000 870870 830110 0 0 0 0 0 0 32106 494 33754 167947;167948;167949 169184;169185 169184 2 SVPVTKPVPVTKPITVTK VTKAMPVTKPITVTKSVPVTKPVPVTKPIT VTKPVPVTKPITVTKLVTVTKPVPVTKPVT K S V T K L 0 0 0 0 0 0 0 0 0 1 0 3 0 0 4 1 4 0 0 5 0 0 18 2 1890.1554 Q96KM6 Q96KM6 263 280 ZNF512B Zinc finger protein 512B yes yes 3;4 0.0012276 54.368 By MS/MS By MS/MS 2 2 0.44357 0.49577 14.759 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37095 0.4525 1.0185 2 2 Median 0.56119 0.5747 8.9967 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17264000 13019000 4244500 0 0 0 0 0 0 14132000 11105000 3027100 3131200 1913800 1217400 0 0 0 0 0 0 32107 3694 33755 167950;167951;167952;167953 169186;169187;169188;169189 169189 4 SVQAGNPGGPGPGGR DRCQHAAEIITDLLRSVQAGNPGGPGPGGR SVQAGNPGGPGPGGRGRGRGQGNWNMGPPG R S V G R G 1 1 1 0 0 1 0 6 0 0 0 0 0 0 3 1 0 0 0 1 0 0 15 0 1306.6378 Q96AE4;E9PEB5 Q96AE4 345 359 FUBP1 Far upstream element-binding protein 1 yes no 2 0.0014708 39.266 By MS/MS 1 0.46199 0.39251 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46199 0.39251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 454920 269160 185760 0 0 0 0 0 0 0 0 0 454920 269160 185760 0 0 0 0 0 0 32108 3599 33756 167954 169190 169190 1 SVQEFLTDMK DFQTVQNKCSCGSYRSVQEFLTDMKQVFTN CGSYRSVQEFLTDMKQVFTNAEVYNCRGSH R S V M K Q 0 0 0 1 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 1 0 0 10 0 1196.5747 Q9UIG0 Q9UIG0 1400 1409 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0037749 55.549 By MS/MS By MS/MS By matching 1 5 3 1.0574 1.0493 14.021 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0574 1.1749 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9783 1.0081 6.0124 5 0 Median 1.5051 1.2756 17.339 3 0 Median 19619000 9755700 9863500 0 0 0 0 0 0 1789700 668360 1121300 0 0 0 17374000 8880900 8492800 455840 206410 249420 32109 4290 33757 167955;167956;167957;167958;167959;167960;167961;167962;167963 169191;169192;169193 169193 3 SVQEGENPDDGVR ______________________________ KRSVQEGENPDDGVRGSPPEDYRLGQVASS R S V V R G 0 1 1 2 0 1 2 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 13 0 1400.6168 P42696;A2A2V2;Q5TCT4;H7C5M1 P42696 14 26 RBM34 RNA-binding protein 34 yes no 2 0.0010336 60.434 By MS/MS 1 0.76211 0.76445 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76211 0.76445 NaN 1 0 Median NaN NaN NaN 0 0 Median 4090200 2352700 1737500 0 0 0 0 0 0 0 0 0 0 0 0 4090200 2352700 1737500 0 0 0 32110 2314 33758 167964 169194;169195 169194 2 SVQEIAEQLLLENHPAR AELMRELDQKEENIKSVQEIAEQLLLENHP QEIAEQLLLENHPARLTIEAYRAAMQTQWS K S V A R L 2 1 1 0 0 2 3 0 1 1 3 0 0 0 1 1 0 0 0 1 0 0 17 0 1946.0221 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 757 773 DST Dystonin yes no 3 5.7312E-06 63.918 By MS/MS By MS/MS 1 1 0.64073 0.59217 30.435 2 Median 0.47114 0.47751 NaN 1 1 Median 0.87137 0.73435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7202700 4216300 2986500 2345200 1616200 728980 4857600 2600100 2257500 0 0 0 0 0 0 0 0 0 0 0 0 32111 934 33759 167965;167966 169196;169197 169197 2 SVQEVLQK AEKWNENVQYLSEDRSVQEVLQKHFNISKN QYLSEDRSVQEVLQKHFNISKNLRSLHMLL R S V Q K H 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 929.5182 O43929 O43929 261 268 ORC4 Origin recognition complex subunit 4 yes yes 2 0.0062263 72.138 By matching By MS/MS By MS/MS 1 3 2 1.1546 1.092 12.335 6 Median NaN NaN NaN 0 0 Median 1.6193 1.4323 NaN 1 0 Median 1.11 1.0974 9.1458 3 0 Median 1.2179 1.0725 1.8326 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10245000 4752500 5492000 0 0 0 368900 147370 221530 6566800 3034100 3532700 3308900 1571100 1737800 0 0 0 0 0 0 32112 1602 33760 167967;167968;167969;167970;167971;167972 169198;169199;169200;169201 169201 4 SVQFLIQHGFNFNQQYAQGIPYHK NLTLLCMEEYVIEPKSVQFLIQHGFNFNQQ FNFNQQYAQGIPYHKGNDKGDESQSQSVRT K S V H K G 1 0 2 0 0 5 0 2 2 2 1 1 0 3 1 1 0 0 2 1 0 0 24 0 2863.4194 Q96GM8 Q96GM8 137 160 TOE1 Target of EGR1 protein 1 yes yes 4 0.02751 12.677 By MS/MS 1 0.98567 1.0077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98567 1.0077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3259100 1520800 1738300 0 0 0 0 0 0 3259100 1520800 1738300 0 0 0 0 0 0 0 0 0 32113 3660 33761 167973 169202 169202 1 SVQNDSQAIAEVLNQLK QGSSHHITVKINELKSVQNDSQAIAEVLNQ QNDSQAIAEVLNQLKDMLANFRGSEKYCYL K S V L K D 2 0 2 1 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 17 0 1855.964 P15924 P15924 711 727 DSP Desmoplakin yes yes 2 0.03577 23.118 By MS/MS By matching By matching 2 1 1 0.77478 0.73446 20.253 4 Median 0.78584 0.75951 34.885 2 0 Median 0.82809 0.7265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7249 0.74251 NaN 1 0 Median NaN NaN NaN 0 0 Median 4683900 2760700 1923200 2601100 1578100 1022900 1608200 886820 721380 0 0 0 0 0 0 474700 295790 178910 0 0 0 32114 2021 33762 167974;167975;167976;167977 169203 169203 1 SVQPTSEER STLINTLFKSKISRKSVQPTSEERIPKTIE SKISRKSVQPTSEERIPKTIEIKSITHDIE K S V E R I 0 1 0 0 0 1 2 0 0 0 0 0 0 0 1 2 1 0 0 1 0 0 9 0 1031.4884 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4;K7ELJ9;K7EJZ2;K7ER14;K7ENQ5;K7EN52;K7EKN4;K7EIR4 Q9UHD8 327 335 SEPT9 Septin-9 yes no 2 1.9806E-07 167.24 By MS/MS By matching 2 2 1.0145 0.96833 8.8336 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86679 0.9027 7.5867 2 0 Median 1.2016 1.0206 5.0933 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5513200 2871200 2642000 0 0 0 0 0 0 5188200 2740900 2447200 325030 130290 194740 0 0 0 0 0 0 32115 4276 33763 167978;167979;167980;167981 169204;169205 169205 2 SVQQTVELLTR MGVTCVSQMPVAEGKSVQQTVELLTRKLEM AEGKSVQQTVELLTRKLEMLGAEKQGTFCV K S V T R K 0 1 0 0 0 2 1 0 0 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1272.7038 Q9H944;A6PVP4;B7ZBQ3;B7ZBQ1 Q9H944 16 26 MED20 Mediator of RNA polymerase II transcription subunit 20 yes no 2 0.00011507 132.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.2614 1.1526 19.732 5 Median 1.1548 1.0955 NaN 1 0 Median 1.434 1.2251 NaN 1 0 Median 1.2 1.1526 NaN 1 0 Median 1.2614 1.0408 NaN 1 0 Median 1.723 1.7145 NaN 1 0 Median NaN NaN NaN 0 0 Median 38588000 16990000 21599000 12935000 5883600 7051000 702490 282360 420130 19330000 8666200 10664000 848170 372090 476080 4773000 1785500 2987600 0 0 0 32116 3993 33764 167982;167983;167984;167985;167986 169206;169207;169208;169209;169210;169211;169212 169208 7 SVQTFADK EIYFGKTKDIVNGLRSVQTFADKSKQEALK DIVNGLRSVQTFADKSKQEALKNDLVEALK R S V D K S 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 8 0 894.4447 B1AK87;B1AK88 B1AK87 233 240 CAPZB yes no 2 0.008272 63.565 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.2299 1.1622 40.579 5 Median 1.2299 1.1463 NaN 1 0 Median 1.3859 1.1622 NaN 1 0 Median 1.4438 1.3844 23.086 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66647 0.5426 NaN 1 0 Median 14648000 6650400 7998000 8483800 4037300 4446600 3977100 1651300 2325800 2151400 938770 1212600 0 0 0 0 0 0 36163 23020 13143 32117 566 33765 167987;167988;167989;167990;167991;167992 169213;169214;169215;169216 169214 4 SVQTTLQTDEVK GPGFHLMLPFITSYKSVQTTLQTDEVKNVP SYKSVQTTLQTDEVKNVPCGTSGGVMIYFD K S V V K N 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1347.6882 O94905;E5RHW4;O75477;B0QZ43 O94905 61 72 ERLIN2;ERLIN1 Erlin-2;Erlin-1 no no 2 5.3399E-06 150.61 By MS/MS By MS/MS By MS/MS 1 1 1 1.2275 1.2026 17.992 3 Median 0.99168 0.91357 NaN 1 0 Median 1.4116 1.2026 NaN 1 0 Median 1.2275 1.2817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57506000 26764000 30742000 29159000 14986000 14173000 21011000 8440700 12570000 7336100 3336900 3999300 0 0 0 0 0 0 0 0 0 32118 848;1675 33766 167993;167994;167995 169217;169218;169219;169220;169221 169221 5 SVQVSTLK WVSHDSTVSVADASKSVQVSTLKTEFLPLL SVADASKSVQVSTLKTEFLPLLSVSFVSEN K S V L K T 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 2 1 0 0 2 0 0 8 0 860.49673 A0A1W2PNV4;E9PF58;Q92747 Q92747 236 243 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 2 0.0055363 75.213 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.3107 1.1906 33.98 5 Median 1.1168 1.0874 NaN 1 0 Median 1.3806 1.1906 NaN 1 0 Median 1.3107 1.4567 NaN 1 0 Median 1.4423 1.2075 NaN 1 0 Median 0.57246 0.59693 NaN 1 0 Median NaN NaN NaN 0 0 Median 4647100 2055300 2591900 290410 136200 154210 2387100 965540 1421600 728830 351710 377120 630940 277840 353100 609860 323980 285880 0 0 0 32119 334;3552 33767 167996;167997;167998;167999;168000 169222;169223 169223 2 SVQYDDVPEYKDR DGSPVFIAFRSSTKKSVQYDDVPEYKDRLN KKSVQYDDVPEYKDRLNLSENYTLSISNAR K S V D R L 0 1 0 3 0 1 1 0 0 0 0 1 0 0 1 1 0 0 2 2 0 0 13 1 1612.7369 Q13740;F5GXJ9 Q13740 77 89 ALCAM CD166 antigen yes no 3 0.00053924 50.563 By MS/MS 2 0.72962 0.75314 7.2994 2 Median 0.72962 0.75314 7.2994 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7521900 4380700 3141200 7521900 4380700 3141200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32120 2836 33768 168001;168002 169224;169225 169224 2 SVSDNDIR IRRDHFEEAMRFARRSVSDNDIRKYEMFAQ AMRFARRSVSDNDIRKYEMFAQTLQQSRGF R S V I R K 0 1 1 2 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 1 0 0 8 0 904.42502 P55072 P55072 746 753 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.020415 46.426 By MS/MS By MS/MS By matching 2 1 1 1.1344 1.133 5.7213 4 Median 1.1313 1.133 0.42896 2 0 Median 1.1866 1.0283 NaN 1 0 Median 1.1357 1.1748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5153000 2393000 2759900 1924800 858960 1065900 2949600 1408800 1540800 278500 125250 153250 0 0 0 0 0 0 0 0 0 32121 2494 33769 168003;168004;168005;168006 169226;169227;169228;169229;169230;169231;169232 169230 7 SVSDQFYR ______________________________ MSVNVNRSVSDQFYRYKMPRLIAKVEGKGN R S V Y R Y 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 2 0 0 1 1 0 0 8 0 1000.4614 P55010;H0YK11;H0YMJ8;H0YM54;H0YLZ1;H0YN40;H0YK29 P55010 8 15 EIF5 Eukaryotic translation initiation factor 5 yes no 2 0.0025204 107.66 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1.2692 1.1517 42.655 6 Median 1.3081 1.2688 NaN 1 0 Median 1.2315 1.0451 NaN 1 0 Median 1.7339 1.7769 23.658 2 0 Median 1.2199 1.0455 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75773 0.58838 NaN 1 0 Median 21029000 8999600 12030000 6978400 2644100 4334400 4683900 2101600 2582300 4273900 1910800 2363100 4967100 2277600 2689500 0 0 0 125810 65669 60141 32122 2489 33770 168007;168008;168009;168010;168011;168012 169233;169234;169235;169236;169237 169234 5 SVSDYDGK FGGEIKTHILLFLPKSVSDYDGKLSNFKTA ILLFLPKSVSDYDGKLSNFKTAAESFKGKI K S V G K L 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 8 0 869.37668 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 264 271 P4HB Protein disulfide-isomerase yes no 2 0.036811 37.558 By MS/MS By MS/MS 2 1 1.2977 1.2799 9.6596 3 Median 1.2673 1.2391 4.5836 2 0 Median 1.6352 1.4506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2024400 818070 1206300 1448200 596920 851280 576190 221150 355040 0 0 0 0 0 0 0 0 0 0 0 0 32123 1883 33771 168013;168014;168015 169238;169239;169240;169241 169239 4 SVSDYDGKLSNFK FGGEIKTHILLFLPKSVSDYDGKLSNFKTA PKSVSDYDGKLSNFKTAAESFKGKILFIFI K S V F K T 0 0 1 2 0 0 0 1 0 0 1 2 0 1 0 3 0 0 1 1 0 0 13 1 1458.6991 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 264 276 P4HB Protein disulfide-isomerase yes no 2;3 0.00041063 98.898 By MS/MS 3 0.90932 0.85663 21.485 3 Median 0.90932 0.85663 21.485 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19677000 10675000 9002200 19677000 10675000 9002200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32124 1883 33772 168016;168017;168018 169242;169243 169243 2 SVSFEQAVR YIIIRARDLIKLLARSVSFEQAVRILQDDV IKLLARSVSFEQAVRILQDDVACDIIKIGS R S V V R I 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 2 0 0 0 2 0 0 9 0 1021.5193 Q13601 Q13601 126 134 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.00043273 109.86 By matching By MS/MS By matching By MS/MS 1 2 2 1 1.0102 1.0249 25.377 5 Median 0.65267 0.61978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81742 0.8099 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0838 1.0894 8.6364 2 0 Median 1.2375 1.0636 NaN 1 0 Median 37809000 19096000 18713000 5625000 3409800 2215200 0 0 0 8159900 4263000 3896900 0 0 0 18551000 9152000 9399000 5473000 2271500 3201500 32125 2830 33773 168019;168020;168021;168022;168023;168024 169244;169245;169246;169247 169244 4 SVSFSDVFFK WGRNEAWRYMGGFAKSVSFSDVFFKGFKWG GGFAKSVSFSDVFFKGFKWGFAAFVVAVGA K S V F K G 0 0 0 1 0 0 0 0 0 0 0 1 0 3 0 3 0 0 0 2 0 0 10 0 1161.5706 O43676 O43676 60 69 NDUFB3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 yes yes 2 0.0010649 68.846 By MS/MS By matching By matching 1 1 1 1.2855 1.1685 26.728 3 Median 1.2855 1.1685 NaN 1 0 Median 1.9047 1.604 NaN 1 0 Median 0.93973 0.94291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16144000 7201700 8941800 13440000 5971900 7468000 1173100 418340 754710 1530500 811490 719030 0 0 0 0 0 0 0 0 0 32126 1583 33774 168025;168026;168027 169248 169248 1 SVSGFLHFDTATK KPYSDGEGGIEDENRSVSGFLHFDTATKVR NRSVSGFLHFDTATKVRRKILNILDSIDFS R S V T K V 1 0 0 1 0 0 0 1 1 0 1 1 0 2 0 2 2 0 0 1 0 0 13 0 1408.6987 Q92621 Q92621 1165 1177 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 1.6485E-06 161.67 By matching By MS/MS By matching By matching 2 3 2 2 1.4242 1.3966 22.685 9 Median NaN NaN NaN 0 0 Median 1.8774 1.6399 14.702 2 0 Median 1.2681 1.3966 11.987 3 0 Median 1.4599 1.3232 6.0281 2 0 Median 1.4342 1.5055 54.69 2 0 Median NaN NaN NaN 0 0 Median 58859000 26400000 32459000 0 0 0 2334700 803310 1531400 49838000 22750000 27088000 4146400 1708100 2438300 2539900 1138800 1401200 0 0 0 32127 3547 33775 168028;168029;168030;168031;168032;168033;168034;168035;168036 169249;169250;169251 169249 3 SVSGTDVQEECR SGKPEQEVPDAEEEKSVSGTDVQEECREKG EEKSVSGTDVQEECREKGGQEKQGEVIVSI K S V C R E 0 1 0 1 1 1 2 1 0 0 0 0 0 0 0 2 1 0 0 2 0 0 12 0 1365.5831 P49321;E9PPR5 P49321 244 255 NASP Nuclear autoantigenic sperm protein yes no 2 6.2035E-05 134.68 By MS/MS 1 1.713 1.4418 NaN 1 Median NaN NaN NaN 0 0 Median 1.713 1.4418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5989700 2449800 3539900 0 0 0 5989700 2449800 3539900 0 0 0 0 0 0 0 0 0 0 0 0 32128 2376 33776 168037 169252;169253 169252 2 SVSGTDVQEECREK SGKPEQEVPDAEEEKSVSGTDVQEECREKG KSVSGTDVQEECREKGGQEKQGEVIVSIEE K S V E K G 0 1 0 1 1 1 3 1 0 0 0 1 0 0 0 2 1 0 0 2 0 0 14 1 1622.7206 P49321;E9PPR5 P49321 244 257 NASP Nuclear autoantigenic sperm protein yes no 2;3 1.062E-06 113.63 By matching By MS/MS 2 2 1.9003 1.7581 21.24 4 Linear 1.0834 1.1192 1.1294 2 0 Median 1.7048 1.6108 5.0812 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7156900 2582200 4574700 1081600 483750 597830 6075300 2098400 3976900 0 0 0 0 0 0 0 0 0 0 0 0 32129 2376 33777 168038;168039;168040;168041 169254;169255;169256 169256 3 SVSHDLEQLHR GALLPYFVYVVSGVKSVSHDLEQLHRLLQV SGVKSVSHDLEQLHRLLQVARSLFRNPHLC K S V H R L 0 1 0 1 0 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1319.6582 Q9Y6J9 Q9Y6J9 205 215 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 3 0.00018851 64.439 By MS/MS 1 0.7754 0.82743 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7754 0.82743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224700 1004600 1220100 0 0 0 0 0 0 2224700 1004600 1220100 0 0 0 0 0 0 0 0 0 32130 4494 33778 168042 169257 169257 1 SVSLTGAPESVQK CKVQISPDSGGLPERSVSLTGAPESVQKAK ERSVSLTGAPESVQKAKMMLDDIVSRGRGG R S V Q K A 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 3 1 0 0 2 0 0 13 0 1301.6827 Q92945;A0A087WTP3;M0R0I5;M0QYH3;M0QXW7 Q92945 191 203 KHSRP Far upstream element-binding protein 2 yes no 2 6.6201E-07 128.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 4 1 2 0.91471 0.82211 10.381 12 Median 0.84195 0.75815 NaN 1 0 Median 0.88815 0.77651 NaN 1 0 Median 0.77687 0.78937 10.644 3 0 Median 0.99594 0.85074 13.82 4 1 Median 0.79533 0.81206 NaN 1 1 Median 1.0435 0.85478 2.1738 2 2 Median 517510000 269170000 248340000 15522000 7935000 7586800 13048000 6713200 6334900 277860000 152360000 125500000 174800000 83763000 91041000 12472000 6826800 5645300 23802000 11568000 12234000 32131 3568 33779 168043;168044;168045;168046;168047;168048;168049;168050;168051;168052;168053;168054 169258;169259;169260;169261;169262;169263;169264;169265;169266;169267;169268;169269;169270;169271;169272;169273;169274;169275;169276;169277;169278;169279;169280;169281 169262 24 SVSLVGEDERK VHRVGRTARAGRAGRSVSLVGEDERKMLKE RAGRSVSLVGEDERKMLKEIVKAAKAPVKA R S V R K M 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 1 1217.6252 B7Z6D5;Q96GQ7 B7Z6D5 532 542 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2;3 0.00025277 93.111 By matching By matching By matching By MS/MS By MS/MS 1 2 1 4 4 1.2277 1.2499 31.97 12 Median NaN NaN NaN 0 0 Median 1.3018 1.1728 NaN 1 0 Median 1.1078 1.164 12.32 2 0 Median 0.70235 0.71848 NaN 1 0 Median 1.1631 1.3006 25.99 4 0 Median 1.4935 1.3017 36.551 4 1 Median 22871000 9907300 12964000 0 0 0 619920 249540 370380 3323100 1450000 1873100 1651100 897510 753620 11817000 5135500 6681100 5460600 2174800 3285800 32132 635 33780 168055;168056;168057;168058;168059;168060;168061;168062;168063;168064;168065;168066 169282;169283;169284;169285;169286;169287;169288;169289;169290 169286 9 SVSNLQKPTQSISQENTNSVPGGPK ASQPPESLPQPGLQKSVSNLQKPTQSISQE SISQENTNSVPGGPKSWAQLNGKPVGHEGG K S V P K S 0 0 3 0 0 3 1 2 0 1 1 2 0 0 3 5 2 0 0 2 0 0 25 1 2596.3093 Q5JSZ5;A0A1W2PQP5 Q5JSZ5 118 142 PRRC2B Protein PRRC2B yes no 3 0.015059 15.499 By MS/MS By matching 1 1 0.6779 0.65991 1.6841 2 Median 0.68418 0.66781 NaN 1 0 Median 0.67167 0.6521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9034200 5334100 3700100 7212400 4464200 2748300 1821800 869900 951880 0 0 0 0 0 0 0 0 0 0 0 0 32133 3051 33781 168067;168068 169291 169291 1 SVSSNVASVSPIPAGSK ASPRVPGGSPRTPNRSVSSNVASVSPIPAG SSNVASVSPIPAGSKKIDPNMKAGATSEGV R S V S K K 2 0 1 0 0 0 0 1 0 1 0 1 0 0 2 6 0 0 0 3 0 0 17 0 1585.8312 Q9Y6G9;E9PHI6 Q9Y6G9 412 428 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 yes no 2 2.0572E-10 102.62 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.76478 0.69213 7.1258 5 Median 0.72912 0.69213 NaN 1 0 Median 0.76478 0.66034 NaN 1 0 Median 0.69757 0.68827 NaN 1 0 Median 0.89969 0.76933 2.7408 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23187000 12803000 10384000 7596600 4271600 3324900 2282400 1067600 1214700 7644600 4355200 3289400 5663800 3108900 2554900 0 0 0 0 0 0 32134 4491 33782 168069;168070;168071;168072;168073 169292;169293;169294;169295;169296;169297;169298 169292 7 SVSSQSSSSVSSQVTTAGSGK SGISSQNSSTSDGDRSVSSQSSSSVSSQVT SSSVSSQVTTAGSGKASEAEAPDKHGSASF R S V G K A 1 0 0 0 0 2 0 2 0 0 0 1 0 0 0 10 2 0 0 3 0 0 21 0 1956.9236 Q9NXV6 Q9NXV6 209 229 CDKN2AIP CDKN2A-interacting protein yes yes 2 1.299E-13 89.541 By MS/MS 1 0.9846 1.0163 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9846 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7378000 3840500 3537500 0 0 0 0 0 0 7378000 3840500 3537500 0 0 0 0 0 0 0 0 0 32135 4169 33783 168074 169299 169299 1 SVSSSLSDAR VQAAICLLANMAVDRSVSSSLSDARDALVN MAVDRSVSSSLSDARDALVNAVVDSLSAYG R S V A R D 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 5 0 0 0 1 0 0 10 0 1007.4884 O95487 O95487 1030 1039 SEC24B Protein transport protein Sec24B yes yes 2 0.0084719 46.462 By MS/MS 1 1.0317 0.87617 NaN 1 Median NaN NaN NaN 0 0 Median 1.0317 0.87617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3789900 1739700 2050200 0 0 0 3789900 1739700 2050200 0 0 0 0 0 0 0 0 0 0 0 0 32136 1778 33784 168075 169300 169300 1 SVSSVLSSLTPAK YLETHPRPPKPDPVKSVSSVLSSLTPAKVA VKSVSSVLSSLTPAKVAPVINNGSPTILGK K S V A K V 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 2 0 0 13 0 1274.7082 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 555 567 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00026336 79.148 By MS/MS By matching By MS/MS By matching 2 2 2 2 0.99349 0.92389 17.524 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74832 0.77308 9.2512 2 0 Median 1.3189 1.1518 11.806 2 0 Median 0.85646 0.86485 10.551 2 0 Median 1.1627 0.97215 8.4123 2 0 Median 19904000 10389000 9514300 0 0 0 0 0 0 13057000 7004800 6052600 638910 308450 330460 5528400 2743000 2785400 678800 333060 345750 32137 888 33785 168076;168077;168078;168079;168080;168081;168082;168083 169301;169302;169303;169304;169305 169302 5 SVSTPSEAGSQDSGDGAVGSR FSEYWVPPPMSPSSKSVSTPSEAGSQDSGD EAGSQDSGDGAVGSRTLHWDTDPSVLQLHS K S V S R T 2 1 0 2 0 1 1 4 0 0 0 0 0 0 1 6 1 0 0 2 0 0 21 0 1949.8563 Q13409 Q13409 92 112 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 no no 2;3 8.529E-26 123.38 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 0.86783 0.861 11.26 5 Median 0.79021 0.78194 NaN 1 0 Median 1.2036 1.0542 NaN 1 0 Median 0.84447 0.87537 6.1524 2 1 Median 0.99919 0.861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19887000 10038000 9849300 1935900 1052700 883260 1636400 626380 1010000 13945000 7291500 6653100 2369900 1067000 1302900 0 0 0 0 0 0 32138 2811 33786 168084;168085;168086;168087;168088;168089 169306;169307;169308;169309;169310;169311;169312;169313;169314;169315;169316;169317;169318 169310 13 SVSVATGLNMMK VNNSTGTSEDPSLQRSVSVATGLNMMKKQK LQRSVSVATGLNMMKKQKVKTIFPHTAGSN R S V M K K 1 0 1 0 0 0 0 1 0 0 1 1 2 0 0 2 1 0 0 2 0 0 12 0 1236.6206 Q9UHR4 Q9UHR4 329 340 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 0.00062172 66.435 By MS/MS 1 1.2251 1.2234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2251 1.2234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5721100 2662500 3058600 0 0 0 0 0 0 5721100 2662500 3058600 0 0 0 0 0 0 0 0 0 32139 4281 33787 168090 169319;169320 169319 2 SVTAFFK SKDPAEQQGKGVALKSVTAFFKWLREAEEE QGKGVALKSVTAFFKWLREAEEESDHN___ K S V F K W 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 1 0 0 1 0 0 7 0 798.42759 E7EX73;E9PGM1;E7EUU4;Q04637 E7EX73 1418 1424 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.026776 52.683 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3228 1.169 12.313 4 Median 1.3918 1.3389 NaN 1 0 Median 1.4143 1.2564 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.139 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2572 1.0878 NaN 1 0 Median 9836500 4220800 5615700 6157900 2649000 3509000 2996800 1277400 1719500 0 0 0 427630 196880 230760 0 0 0 254110 97647 156460 32140 894 33788 168091;168092;168093;168094 169321;169322;169323;169324 169321 4 SVTDSIRDEYAFLQK IGVVNRSQLDINNKKSVTDSIRDEYAFLQK SVTDSIRDEYAFLQKKYPSLANRNGTKYLA K S V Q K K 1 1 0 2 0 1 1 0 0 1 1 1 0 1 0 2 1 0 1 1 0 0 15 1 1770.8788 O00429;F8VZ52 O00429 257 271 DNM1L Dynamin-1-like protein yes no 2 0.0018027 62.408 By MS/MS 1 0.85673 0.87974 NaN 1 Median 0.85673 0.87974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10038000 5288800 4749500 10038000 5288800 4749500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32141 1463 33789 168095 169325;169326 169326 2 SVTDYAQQNPAAQIPAR KNKKRNTETEQRAPKSVTDYAQQNPAAQIP TDYAQQNPAAQIPARQREIEMNRQQRFFRI K S V A R Q 4 1 1 1 0 3 0 0 0 1 0 0 0 0 2 1 1 0 1 1 0 0 17 0 1828.9068 A0A0A0MRM8 A0A0A0MRM8 1110 1126 MYO6 yes yes 2 1.735E-58 178.46 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.56668 0.58303 42.105 4 Median 0.82113 0.79037 NaN 1 1 Median 1.0522 0.89681 NaN 1 0 Median 0.39107 0.43008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36437 0.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median 34374000 20584000 13790000 19114000 10086000 9027700 3309900 1673500 1636400 7751600 5644900 2106700 0 0 0 4198500 3179100 1019400 0 0 0 32142 164 33790 168096;168097;168098;168099 169327;169328;169329;169330 169327 4 SVTEQGAELSNEER AEQAERYDDMAACMKSVTEQGAELSNEERN KSVTEQGAELSNEERNLLSVAYKNVVGARR K S V E R N 1 1 1 0 0 1 4 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 14 0 1547.7063 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 28 41 YWHAZ 14-3-3 protein zeta/delta yes no 2;3 3.1908E-55 234.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 3 3 1 2 1.0449 0.97201 13.376 20 Median 1.0195 0.99896 3.6951 5 0 Median 1.0886 0.91303 16.204 6 2 Median 1.0212 0.97979 14.582 3 0 Median 1.1813 0.97901 5.3237 3 0 Plateau 1.2607 1.2579 NaN 1 0 Median 1.3299 1.0758 11.39 2 0 Median 843050000 394110000 448940000 401220000 190900000 210320000 224820000 103980000 120840000 158200000 74546000 83656000 39016000 17106000 21911000 5533800 2015100 3518800 14253000 5552500 8700200 32143 2618 33791 168100;168101;168102;168103;168104;168105;168106;168107;168108;168109;168110;168111;168112;168113;168114;168115;168116;168117;168118;168119 169331;169332;169333;169334;169335;169336;169337;169338;169339;169340;169341;169342;169343;169344;169345;169346;169347;169348;169349;169350;169351;169352;169353;169354;169355;169356;169357;169358;169359;169360;169361;169362;169363;169364;169365;169366;169367;169368 169335 38 SVTLGYLFSQGHLTR QGALLTHFLQPIYLKSVTLGYLFSQGHLTR SVTLGYLFSQGHLTRAICCRVTRDGSAFED K S V T R A 0 1 0 0 0 1 0 2 1 0 3 0 0 1 0 2 2 0 1 1 0 0 15 0 1677.8839 P55265;A0A3B3IRQ9 P55265 1064 1078 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 1.7571E-07 95.018 By MS/MS By matching By MS/MS By matching 3 1 7 3 1.2463 1.2973 18.69 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2212 1.3089 5.922 3 0 Median 1.1492 1.0044 NaN 1 0 Median 1.2718 1.2858 19.713 7 2 Median 1.7639 1.4298 26.447 3 0 Median 51000000 22580000 28420000 0 0 0 0 0 0 11757000 5473700 6283300 496450 174110 322340 36617000 15955000 20662000 2129000 976740 1152200 32144 2498 33792 168120;168121;168122;168123;168124;168125;168126;168127;168128;168129;168130;168131;168132;168133 169369;169370;169371;169372;169373;169374;169375;169376 169375 8 SVTVVEDDEDEDGDDLLHHHHVSGSR INSTGEEVAMRKLVRSVTVVEDDEDEDGDD DGDDLLHHHHVSGSRR______________ R S V S R R 0 1 0 6 0 0 3 2 4 0 2 0 0 0 0 3 1 0 0 4 0 0 26 0 2898.2652 Q3BDU5 Q3BDU5 461 486 LMNA no no 3;4;5 8.3182E-32 107.05 By MS/MS By MS/MS By MS/MS By matching 5 3 4 2 1.1548 1.1498 22.922 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1315 1.1395 8.1012 5 0 Median 1.4249 1.1932 11.588 3 0 Median 0.9182 0.92592 10.381 4 0 Median 2.2782 1.7622 31.163 2 0 Median 222840000 102890000 119940000 0 0 0 0 0 0 114640000 50848000 63790000 16406000 6573900 9832400 90445000 45145000 45300000 1350200 328060 1022200 32145 3010 33793 168134;168135;168136;168137;168138;168139;168140;168141;168142;168143;168144;168145;168146;168147 169377;169378;169379;169380;169381;169382;169383;169384;169385;169386;169387;169388;169389;169390;169391;169392;169393;169394;169395;169396 169388 20 SVVALHNLINNK TNDQMVVVYLASLIRSVVALHNLINNKIAN LIRSVVALHNLINNKIANRDAEKKEGQEKE R S V N K I 1 0 3 0 0 0 0 0 1 1 2 1 0 0 0 1 0 0 0 2 0 0 12 0 1320.7514 P51665 P51665 268 279 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes yes 2;3 1.7769E-30 212.21 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 1 1 1 1.093 0.96589 23.423 8 Median 1.113 1.0192 17.4 3 0 Median 1.2532 1.0678 9.3472 2 0 Median 0.55207 0.64833 NaN 1 0 Median 1.0733 0.90931 NaN 1 1 Median 0.69749 0.697 NaN 1 1 Median NaN NaN NaN 0 0 Median 198350000 92221000 106130000 148410000 68365000 80041000 38603000 16810000 21793000 1263700 530070 733650 3427100 1600600 1826400 6648400 4915900 1732500 0 0 0 32146 2440 33794 168148;168149;168150;168151;168152;168153;168154;168155 169397;169398;169399;169400;169401;169402;169403;169404;169405 169398 9 SVVANFIVK HISMLAPDQFASPMKSVVANFIVKDLLMND FASPMKSVVANFIVKDLLMNDRSTGEKNGK K S V V K D 1 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 3 0 0 9 0 975.57532 Q29RF7;H0Y9L6 Q29RF7 797 805 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes no 2 0.003417 65.252 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1.185 1.1124 11.673 6 Median NaN NaN NaN 0 0 Median 1.5849 1.3566 NaN 1 0 Median 1.0153 1.0803 NaN 1 0 Median 1.2496 1.0893 7.1142 2 0 Median 1.1957 1.2583 NaN 1 0 Median 1.1651 1.0045 NaN 1 0 Median 44948000 21300000 23647000 0 0 0 1108100 449500 658630 35620000 17146000 18474000 4476800 1954700 2522100 3313800 1569900 1743900 429280 180310 248970 32147 3003 33795 168156;168157;168158;168159;168160;168161 169406;169407;169408;169409 169407 4 SVVAPEHVK KFIAYQFTDTPLQIKSVVAPEHVKGYIYVE TPLQIKSVVAPEHVKGYIYVEAYKQTHVKQ K S V V K G 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 3 0 0 9 0 964.53418 O00267 O00267 214 222 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.028308 50.607 By MS/MS 1 1.5882 1.3583 NaN 1 Median NaN NaN NaN 0 0 Median 1.5882 1.3583 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1198100 451650 746500 0 0 0 1198100 451650 746500 0 0 0 0 0 0 0 0 0 0 0 0 32148 1452 33796 168162 169410 169410 1 SVVAPPGAPK AHEMMEEEEEIPKPKSVVAPPGAPKKEHVN IPKPKSVVAPPGAPKKEHVNVVFIGHVDAG K S V P K K 2 0 0 0 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 2 0 0 10 0 921.52837 P15170;H3BR35;H3BSV8 P15170 62 71 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes no 2 0.0045773 52.716 By MS/MS By MS/MS By MS/MS 1 2 2 0.71075 0.59595 26.648 5 Median 0.77657 0.7629 NaN 1 1 Median 0.85716 0.73396 29.459 2 0 Median NaN NaN NaN 0 0 Median 0.57441 0.49668 3.1387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18235000 9885600 8349900 2219900 1254900 965000 14293000 7569400 6724000 0 0 0 1722100 1061300 660880 0 0 0 0 0 0 32149 2016 33797 168163;168164;168165;168166;168167 169411;169412;169413;169414;169415;169416 169412 6 SVVGNLHR TGVILANDANAERLKSVVGNLHRLGVTNTI ANAERLKSVVGNLHRLGVTNTIISHYDGRQ K S V H R L 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 880.4879 P46087 P46087 424 431 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0032511 99.919 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 2 1 1.1616 1.1478 14.515 7 Median 0.84798 0.83182 NaN 1 0 Median 1.45 1.2544 7.309 2 0 Median 1.0964 1.1478 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1283 1.1728 4.8789 2 0 Median 1.3843 1.127 NaN 1 0 Median 15407000 6948300 8458500 381420 191060 190360 5281600 2229800 3051800 388870 162000 226870 0 0 0 7990000 3762400 4227600 1364800 603070 761750 32150 2338 33798 168168;168169;168170;168171;168172;168173;168174 169417;169418;169419;169420;169421;169422 169418 6 SVVLMSHLGRPDGVPMPDK AAVPSIKFCLDNGAKSVVLMSHLGRPDGVP MSHLGRPDGVPMPDKYSLEPVAVELKSLLG K S V D K Y 0 1 0 2 0 0 0 2 1 0 2 1 2 0 3 2 0 0 0 3 0 0 19 1 2034.0391 P00558 P00558 57 75 PGK1 Phosphoglycerate kinase 1 yes yes 3;4 4.921E-07 61.167 By MS/MS By MS/MS By MS/MS By matching 3 2 4 1 0.8803 0.89166 29.491 9 Median 0.74547 0.79906 31.502 3 1 Median 0.92234 0.87682 6.4446 2 0 Median 0.7829 0.89166 36.462 3 0 Median 1.4276 1.3793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192750000 99759000 92986000 65441000 33248000 32193000 102570000 51271000 51295000 23807000 14826000 8980800 930760 413380 517390 0 0 0 0 0 0 32151 1824 33799 168175;168176;168177;168178;168179;168180;168181;168182;168183;168184 169423;169424;169425;169426;169427;169428 169423 6 SVVLMSHLGRPDGVPMPDKYSLEPVAVELK AAVPSIKFCLDNGAKSVVLMSHLGRPDGVP MPDKYSLEPVAVELKSLLGKDVLFLKDCVG K S V L K S 1 1 0 2 0 0 2 2 1 0 4 2 2 0 4 3 0 0 1 5 0 0 30 2 3262.7094 P00558 P00558 57 86 PGK1 Phosphoglycerate kinase 1 yes yes 3;4 1.4269E-21 72.791 By MS/MS By MS/MS 2 1 0.60324 0.72106 21.084 3 Median NaN NaN NaN 0 0 Median 0.63553 0.75967 7.3762 2 0 Median 0.45964 0.53327 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55803000 30811000 24992000 0 0 0 50507000 27489000 23018000 5296400 3321500 1974900 0 0 0 0 0 0 0 0 0 32152 1824 33800 168185;168186;168187 169429;169430;169431;169432 169431 4 SVVLQLADGQIFK VDGVIISLCCNSKTKSVVLQLADGQIFKYL TKSVVLQLADGQIFKYLWESPSLAIKPWKN K S V F K Y 1 0 0 1 0 2 0 1 0 1 2 1 0 1 0 1 0 0 0 2 0 0 13 0 1416.7977 O95163;F5H2T0 O95163 568 580 IKBKAP Elongator complex protein 1 yes no 2 4.8978E-05 88.681 By MS/MS By MS/MS By matching 1 1 1 1.2729 1.2026 10.655 3 Median 1.2001 1.2026 NaN 1 0 Median 1.2729 1.0807 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4726 1.3373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8292300 3698200 4594100 1778500 838050 940480 6473200 2843800 3629400 0 0 0 40624 16399 24225 0 0 0 0 0 0 32153 1749 33801 168188;168189;168190 169433;169434 169434 2 SVVNMEWDK VEGLKQFIAAQGSSRSVVNMEWDKIWAFNK AQGSSRSVVNMEWDKIWAFNKKVIDPVAPR R S V D K I 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 1 0 1 0 2 0 0 9 0 1106.5066 P07814;V9GYZ6 P07814 483 491 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.019275 40.002 By MS/MS 2 1.1564 1.0217 4.726 2 Median NaN NaN NaN 0 0 Median 1.1564 1.0217 4.726 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6256100 3111100 3145000 0 0 0 6256100 3111100 3145000 0 0 0 0 0 0 0 0 0 0 0 0 32154 1892 33802 168191;168192 169435;169436 169435 2 SVVNMEWDKIWAFNKK VEGLKQFIAAQGSSRSVVNMEWDKIWAFNK VVNMEWDKIWAFNKKVIDPVAPRYVALLKK R S V K K V 1 0 2 1 0 0 1 0 0 1 0 3 1 1 0 1 0 2 0 2 0 0 16 2 1994.0084 P07814;V9GYZ6 P07814 483 498 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3;4 3.2346E-05 71.692 By MS/MS By matching 2 1 1.0911 1.1946 65.288 3 Median 1.117 1.223 3.3237 2 0 Median 0.44263 0.39503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10920000 4696400 6223400 10627000 4471900 6154700 293250 224510 68739 0 0 0 0 0 0 0 0 0 0 0 0 32155 1892 33803 168193;168194;168195 169437;169438;169439 169437 3 SVVPPNR ______________________________ ______________________________ M S V N R S 0 1 1 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 2 0 0 7 0 767.42899 O43809 O43809 2 8 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 0.013388 69.39 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32156 1592 33804 168196 169440 169440 1 SVVSDLEADDVK KTSPKLSNKELKPQKSVVSDLEADDVKGSV PQKSVVSDLEADDVKGSVPLSSSPPATHFP K S V V K G 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 12 0 1275.6194 P11388 P11388 1374 1385 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00036748 80.763 By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 1.0797 0.95649 29.482 7 Median NaN NaN NaN 0 0 Median 1.0797 0.95649 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2805 1.1357 22.614 2 0 Median 1.1927 1.2488 NaN 1 0 Median 0.85145 0.73449 18.543 3 0 Median 27783000 13314000 14469000 0 0 0 2389400 956390 1433000 0 0 0 5799900 2562900 3237000 14167000 6543000 7624400 5426100 3251900 2174200 32157 1963 33805 168197;168198;168199;168200;168201;168202;168203 169441;169442;169443;169444;169445;169446 169442 6 SVVSLKNEEENENSISQYK KEELLGTKEIEEYKKSVVSLKNEEENENSI LKNEEENENSISQYKESVKRLLNVT_____ K S V Y K E 0 0 3 0 0 1 4 0 0 1 1 2 0 0 0 4 0 0 1 2 0 0 19 1 2196.0546 P82673 P82673 295 313 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 3 6.8415E-10 87.16 By MS/MS By matching By matching By matching 1 1 1 1 1.027 1.0134 32.821 4 Median 0.84727 0.78723 NaN 1 0 Median 0.81584 0.73521 NaN 1 0 Median 1.2449 1.3045 NaN 1 0 Median 1.5431 1.3741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18717000 9000900 9716200 12504000 6233400 6270300 839260 490940 348320 3783000 1660300 2122700 1591100 616270 974840 0 0 0 0 0 0 32158 2652 33806 168204;168205;168206;168207 169447 169447 1 SVVTGGVQSVMGSR DATRGAVQSGVDKTKSVVTGGVQSVMGSRL KSVVTGGVQSVMGSRLGQMVLSGVDTVLGK K S V S R L 0 1 0 0 0 1 0 3 0 0 0 0 1 0 0 3 1 0 0 4 0 0 14 0 1362.6925 O60664;K7ERZ3;K7EL96 O60664 167 180 PLIN3 Perilipin-3 yes no 2 4.8248E-43 223.78 By MS/MS By MS/MS By matching By MS/MS 4 2 1 1 1.1512 0.98157 55.39 8 Median 1.0148 0.97922 50.124 4 0 Median 1.1512 0.98157 2.1556 2 0 Median 0.35549 0.37206 NaN 1 0 Median 2.2666 1.9508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162400000 70039000 92365000 126450000 57078000 69372000 11784000 5270300 6513700 6843400 2810800 4032700 17326000 4879200 12447000 0 0 0 0 0 0 32159 1624 33807;33808 168208;168209;168210;168211;168212;168213;168214;168215 169448;169449;169450;169451;169452;169453;169454;169455;169456;169457;169458;169459 169453 522 12 SVVTSIFGVK ENPKGDNRLDLLKLKSVVTSIFGVKNTELA LLKLKSVVTSIFGVKNTELAVFHDETEIQN K S V V K N 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 2 1 0 0 3 0 0 10 0 1035.5964 P41252;A0A0A0MSX9;J3KR24 P41252 1116 1125 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.0010001 69.423 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 1.0858 1.0132 37.498 8 Median 0.81202 0.77367 60.232 2 0 Median 1.1602 1.0016 22.436 2 0 Median NaN NaN NaN 0 0 Median 1.2025 1.0203 NaN 1 0 Median 0.90033 0.93675 10.099 2 0 Median 2.294 1.9124 NaN 1 0 Median 43144000 18736000 24408000 22717000 10184000 12533000 16933000 6987800 9945500 0 0 0 467390 204960 262430 2516800 1196300 1320500 510170 163300 346870 32160 2302 33809 168216;168217;168218;168219;168220;168221;168222;168223 169460;169461;169462;169463 169463 4 SVVTVAVK AKVNKSTGKSASSVKSVVTVAVKGNKASIK KSASSVKSVVTVAVKGNKASIKTAKSGGKK K S V V K G 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 4 0 0 8 0 801.496 Q14966 Q14966 818 825 ZNF638 Zinc finger protein 638 yes yes 2 0.015483 50.127 By MS/MS By matching By MS/MS 1 1 2 1.1659 1.2202 26.26 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0585 1.1797 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2842 1.3578 NaN 1 0 Median 1.1562 0.97767 36.103 2 0 Median 7707500 3232300 4475200 0 0 0 0 0 0 3312400 1604700 1707700 0 0 0 1717300 611940 1105400 2677800 1015700 1662100 32161 2903 33810 168224;168225;168226;168227 169464;169465;169466;169467 169464 4 SVWGSLAVQNSPK NIARKQPMLDAATGKSVWGSLAVQNSPKGC GKSVWGSLAVQNSPKGCHRDKRTQIVYSDD K S V P K G 1 0 1 0 0 1 0 1 0 0 1 1 0 0 1 3 0 1 0 2 0 0 13 0 1371.7147 P18615 P18615 343 355 NELFE Negative elongation factor E yes yes 2 7.4802E-07 103.34 By MS/MS By matching By MS/MS 1 1 1 1.0732 0.98623 24.049 3 Median 1.0732 1.0154 NaN 1 0 Median 1.1238 0.98623 NaN 1 0 Median 0.6731 0.6603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11531000 5731100 5800300 4558300 1975400 2583000 905720 422800 482930 6067300 3332900 2734400 0 0 0 0 0 0 0 0 0 32162 2059 33811 168228;168229;168230 169468;169469;169470;169471 169471 4 SVYENDVLEQLK CKKHLGRVLSIWEERSVYENDVLEQLKQAL EERSVYENDVLEQLKQALYGDKKPRKRTYE R S V L K Q 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 1 0 0 1 2 0 0 12 0 1435.7195 Q96P16;A0A0C4DGQ6 Q96P16 115 126 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 5.4737E-06 98.943 By MS/MS By matching By MS/MS 1 1 1 0.99814 0.9476 4.7077 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94315 0.90722 NaN 1 0 Median 1.1091 0.9476 NaN 1 0 Median 0.99814 0.9967 NaN 1 0 Median NaN NaN NaN 0 0 Median 15668000 7801600 7866700 0 0 0 0 0 0 8775500 4312800 4462700 680190 315830 364360 6212600 3173100 3039600 0 0 0 32163 3709 33812 168231;168232;168233 169472;169473;169474;169475 169472 4 SVYFKPSLTPSGEFR QRLMTPKPVSIATNRSVYFKPSLTPSGEFR SVYFKPSLTPSGEFRKTNQRIDNKCSTGYE R S V F R K 0 1 0 0 0 0 1 1 0 0 1 1 0 2 2 3 1 0 1 1 0 0 15 1 1713.8726 P49790 P49790 380 394 NUP153 Nuclear pore complex protein Nup153 yes yes 3 6.2359E-05 74.769 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.75396 0.83756 34.877 4 Median 0.42555 0.43009 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71042 0.85139 NaN 1 0 Median 0.85349 0.82395 NaN 1 0 Median 0.80017 0.90687 NaN 1 0 Median NaN NaN NaN 0 0 Median 24813000 15070000 9742900 4208400 2970800 1237600 0 0 0 16611000 10044000 6566600 1276000 627430 648600 2717500 1427300 1290100 0 0 0 32164 2400 33813 168234;168235;168236;168237 169476;169477;169478;169479;169480;169481 169478 6 SVYFKPSLTPSGEFRK QRLMTPKPVSIATNRSVYFKPSLTPSGEFR VYFKPSLTPSGEFRKTNQRIDNKCSTGYEK R S V R K T 0 1 0 0 0 0 1 1 0 0 1 2 0 2 2 3 1 0 1 1 0 0 16 2 1841.9676 P49790 P49790 380 395 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.0051768 43.592 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32165 2400 33814 168238 169482 169482 1 SVYGGEFIQQLK CKKPLERLLNIWQERSVYGGEFIQQLKLSM QERSVYGGEFIQQLKLSMEDSKSPPPKATE R S V L K L 0 0 0 0 0 2 1 2 0 1 1 1 0 1 0 1 0 0 1 1 0 0 12 0 1367.7085 Q9NQG5 Q9NQG5 115 126 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 0.00024813 84.213 By MS/MS By matching By MS/MS By matching By MS/MS 4 1 1 3 2 1.0643 1.0096 29.716 11 Median 1.2654 1.1592 47.82 4 0 Linear 1.168 1.0054 NaN 1 0 Median 1.0079 0.97155 NaN 1 0 Median 1.2528 1.0666 2.2563 3 0 Median 1.0014 1.0159 0.87879 2 1 Median NaN NaN NaN 0 0 Median 95963000 46905000 49058000 34099000 16247000 17853000 136410 60131 76277 30431000 15275000 15156000 3454200 1536400 1917900 27842000 13786000 14056000 0 0 0 32166 4062 33815 168239;168240;168241;168242;168243;168244;168245;168246;168247;168248;168249 169483;169484;169485;169486;169487;169488;169489;169490;169491 169487 9 SVYHLEDIVR LTSHDLFDIDPVVARSVYHLEDIVRQKKRL PVVARSVYHLEDIVRQKKRLEQDKSQTKES R S V V R Q 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 0 1 2 0 0 10 0 1229.6404 Q14669;H7C2Y1 Q14669 1748 1757 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes no 2 0.0015287 64.711 By MS/MS 1 1.0722 1.1714 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0722 1.1714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10143000 5224000 4919100 0 0 0 0 0 0 10143000 5224000 4919100 0 0 0 0 0 0 0 0 0 32167 2886 33816 168250 169492 169492 1 SVYIDAR KFSHDLTLERKCEKRSVYIDARDEELEKDT LERKCEKRSVYIDARDEELEKDTMDNWDEK R S V A R D 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 7 0 822.42357 Q8WU90 Q8WU90 135 141 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 2 0.031276 49.358 By matching By matching By MS/MS 1 1 1 1.1278 0.97741 41.682 3 Median 1.9931 1.9544 NaN 1 0 Median 1.0682 0.92518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1278 0.97741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3341500 1508200 1833300 863230 329190 534040 1766500 851180 915340 0 0 0 711780 327830 383940 0 0 0 0 0 0 32168 3485 33817 168251;168252;168253 169493;169494 169493 2 SVYQLLSENPPDGER VLTDEQSLWIEDTTKSVYQLLSENPPDGER SVYQLLSENPPDGERFSKMVEHILNTEENW K S V E R F 0 1 1 1 0 1 2 1 0 0 2 0 0 0 2 2 0 0 1 1 0 0 15 0 1702.8162 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 359 373 THOC1 THO complex subunit 1 yes no 2 1.1507E-07 136.53 By MS/MS By MS/MS 1 1 0.74686 0.69602 1.0427 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68545 0.69091 NaN 1 0 Median 0.81378 0.70118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34491000 19817000 14674000 0 0 0 0 0 0 32519000 18797000 13722000 1971600 1020200 951470 0 0 0 0 0 0 32169 62 33818 168254;168255 169495;169496;169497 169496 3 SVYSWDIVVQR FATDAILATLMSCTRSVYSWDIVVQRVGSK SCTRSVYSWDIVVQRVGSKLFFDKRDNSDF R S V Q R V 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 2 0 1 1 3 0 0 11 0 1350.6932 O15371;B0QYA4 O15371 261 271 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.00065281 65.305 By matching By matching By MS/MS By matching 1 1 1 1 1.2859 1.1178 30.099 4 Median 1.1173 1.0609 NaN 1 0 Median 1.2001 1.0415 NaN 1 0 Median 1.855 1.9738 NaN 1 0 Median 1.3779 1.1777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17678000 8011800 9666600 12196000 5766000 6429800 3149400 1419200 1730200 2042700 700550 1342100 290590 126020 164580 0 0 0 0 0 0 32170 1540 33819 168256;168257;168258;168259 169498 169498 1 SVYWENTLHTLK DEIGEFSDNIEFYAKSVYWENTLHTLKQRQ YAKSVYWENTLHTLKQRQLTSYVGSVRPLV K S V L K Q 0 0 1 0 0 0 1 0 1 0 2 1 0 0 0 1 2 1 1 1 0 0 12 0 1489.7565 P57740 P57740 294 305 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 0.00039904 93.096 By MS/MS By matching By matching By matching 3 1 1 1 1.0395 1.112 19.908 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.1162 0.93254 3 2 Median 0.89339 0.79438 NaN 1 0 Median 1.4102 1.455 NaN 1 0 Median 1.1412 0.97081 NaN 1 0 Median 77542000 38512000 39030000 0 0 0 0 0 0 74852000 37431000 37421000 190130 86343 103790 2295800 904050 1391700 203450 90160 113290 32171 2518 33820 168260;168261;168262;168263;168264;168265 169499;169500;169501;169502 169500 4 SWAQASVTHGAHGDGGR PAAPENTPLVPSGVKSWAQASVTHGAHGDG AQASVTHGAHGDGGRASSLLSRFSREEFPT K S W G R A 3 1 0 1 0 1 0 4 2 0 0 0 0 0 0 2 1 1 0 1 0 0 17 0 1692.7717 P48634 P48634 141 157 PRRC2A Protein PRRC2A yes yes 3 0.001161 31.876 By MS/MS By matching By matching 2 1 1 1.0672 0.92511 29.405 4 Median NaN NaN NaN 0 0 Median 1.0461 0.89352 6.5846 2 0 Median 1.4459 1.6126 NaN 1 0 Median 1.0447 0.91425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3862300 1939800 1922500 0 0 0 2754400 1343000 1411500 706450 365300 341150 401390 231530 169850 0 0 0 0 0 0 32172 2363 33821 168266;168267;168268;168269 169503;169504 169504 2 SWASPVYTEADGTFSR PLRKKKPDKHEDNRRSWASPVYTEADGTFS WASPVYTEADGTFSRLFQKIYGENGSKSMS R S W S R L 2 1 0 1 0 0 1 1 0 0 0 0 0 1 1 3 2 1 1 1 0 0 16 0 1772.8006 E9PMP7;E9PMS6;E9PLU6;E9PK58;E9PJ10 E9PMP7 290 305 LMO7 yes no 2 0.0034524 47.991 By MS/MS 1 0.70881 0.77076 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70881 0.77076 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1590600 953640 636960 0 0 0 0 0 0 1590600 953640 636960 0 0 0 0 0 0 0 0 0 32173 969 33822 168270 169505 169505 1 SWCPDCVQAEPVVR TIFAYFTGSKDAGGKSWCPDCVQAEPVVRE KSWCPDCVQAEPVVREGLKHISEGCVFIYC K S W V R E 1 1 0 1 2 1 1 0 0 0 0 0 0 0 2 1 0 1 0 3 0 0 14 0 1701.7603 Q9BRA2;I3L0K2;I3L3M7 Q9BRA2 41 54 TXNDC17 Thioredoxin domain-containing protein 17 yes no 2 6.7347E-06 93.058 By MS/MS 1 0.86631 0.73779 NaN 1 Median NaN NaN NaN 0 0 Median 0.86631 0.73779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19141000 10218000 8923000 0 0 0 19141000 10218000 8923000 0 0 0 0 0 0 0 0 0 0 0 0 32174 3793 33823 168271 169506;169507 169506 2 SWEEQMIEVGR QHAKEDETRYHNEMKSWEEQMIEVGRKDLL NEMKSWEEQMIEVGRKDLLRRTIKKQRKYG K S W G R K 0 1 0 0 0 1 3 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 11 0 1362.6238 Q00059 Q00059 217 227 TFAM Transcription factor A, mitochondrial yes yes 2 0.0001236 143.7 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1 1.11 1.0663 8.0706 7 Median 1.0044 0.94761 NaN 1 0 Median 1.309 1.1334 NaN 1 0 Median 1.0322 0.99177 10.253 2 0 Median 1.162 0.96175 NaN 1 0 Median 1.0997 1.0942 NaN 1 0 Median 1.332 1.0695 NaN 1 0 Median 44505000 21050000 23454000 4205900 1955800 2250100 672120 245520 426600 22243000 11047000 11196000 1935000 899170 1035900 4768800 2329500 2439300 10680000 4573300 6107000 32175 2673 33824;33825 168272;168273;168274;168275;168276;168277;168278 169508;169509;169510;169511;169512;169513;169514;169515;169516;169517 169508 1351 9 SWEEQMIEVGRK QHAKEDETRYHNEMKSWEEQMIEVGRKDLL EMKSWEEQMIEVGRKDLLRRTIKKQRKYGA K S W R K D 0 1 0 0 0 1 3 1 0 1 0 1 1 0 0 1 0 1 0 1 0 0 12 1 1490.7188 Q00059 Q00059 217 228 TFAM Transcription factor A, mitochondrial yes yes 2;3 3.6015E-05 96.89 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 4 1.1717 1.12 24.914 13 Median 1.0957 1.1448 NaN 1 0 Median 1.1848 1.12 NaN 1 0 Median 1.0833 1.1274 8.429 3 1 Median 1.0657 0.94339 42.839 2 1 Median 0.76035 0.79244 43.483 2 0 Median 1.2753 1.1306 16.561 4 1 Median 66823000 31248000 35576000 11847000 5460700 6386000 463510 196760 266750 27403000 12923000 14480000 3531300 1824800 1706600 8968600 4484100 4484500 14611000 6358400 8252100 32176 2673 33826;33827 168279;168280;168281;168282;168283;168284;168285;168286;168287;168288;168289;168290;168291 169518;169519;169520;169521;169522;169523;169524;169525;169526;169527;169528;169529 169521 1351 12 SWEQKLEEMR ERLQAEAQQLRKEERSWEQKLEEMRKKEKS RKEERSWEQKLEEMRKKEKSMPWNVDTLSK R S W M R K 0 1 0 0 0 1 3 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 10 1 1334.6289 Q16543;K7EKQ2;K7EQA9 Q16543 97 106 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2;3 0.0031419 92.062 By MS/MS 2 1.219 1.2171 37.733 2 Median 1.219 1.2171 37.733 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11042000 4298300 6743900 11042000 4298300 6743900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32177 2988 33828 168292;168293 169530;169531 169531 2 SWFEPLVEDMQR NQMRLQAEAFQARLRSWFEPLVEDMQRQWA RLRSWFEPLVEDMQRQWAGLVEKVQLALRP R S W Q R Q 0 1 0 1 0 1 2 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 12 0 1535.7079 P02649;CON__Q03247 CON__Q03247 280 291 APOE Apolipoprotein E no no 2 0.00017484 102.06 By MS/MS By MS/MS By MS/MS 1 1 1 0.06614 0.070839 83.279 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.075324 0.073532 NaN 1 1 Median 0.020337 0.017064 NaN 1 1 Median 0.06614 0.070839 NaN 1 1 Median NaN NaN NaN 0 0 Median 5604700 5399600 205070 0 0 0 0 0 0 2138500 2046000 92454 645670 638130 7536.6 2820500 2715500 105080 0 0 0 + 32178 767;1835 33829 168294;168295;168296 169532;169533;169534 169533 3 SWHDVQVSSAYVK LGLSTLGELKQNLSRSWHDVQVSSAYVKTS SRSWHDVQVSSAYVKTSEKLGEWNEKVTQS R S W V K T 1 0 0 1 0 1 0 0 1 0 0 1 0 0 0 3 0 1 1 3 0 0 13 0 1504.731 O43399;A0A087WYR3 O43399 96 108 TPD52L2 Tumor protein D54 yes no 2;3 0.00028178 88.681 By MS/MS By MS/MS 4 1 1.2305 1.1544 12.993 5 Median 1.248 1.1545 13.234 4 1 Median 1.2305 1.0301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92662000 39504000 53158000 82681000 35299000 47381000 9981500 4205100 5776400 0 0 0 0 0 0 0 0 0 0 0 0 32179 1571 33830 168297;168298;168299;168300;168301 169535;169536;169537;169538;169539;169540;169541;169542 169537 8 SWHNVYCVINNQEMGFYK RKHEWEAHNKKASSRSWHNVYCVINNQEMG NVYCVINNQEMGFYKDAKTAASGIPYHSEV R S W Y K D 0 0 3 0 1 1 1 1 1 1 0 1 1 1 0 1 0 1 2 2 0 0 18 0 2288.0143 Q01082;A0A087WUZ3 Q01082 2221 2238 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 0.014725 19.819 By MS/MS By matching 1 1 1.11 1.113 5.7069 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96246 1.069 NaN 1 0 Median 1.2802 1.1588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1819900 1007700 812160 0 0 0 0 0 0 1709700 952220 757520 110170 55526 54644 0 0 0 0 0 0 32180 2681 33831 168302;168303 169543 169543 1 SWIEEQAMGSFLSVAK LKSASSKTEVHIRPKSWIEEQAMGSFLSVA WIEEQAMGSFLSVAKGSDEPPVFLEIHYKG K S W A K G 2 0 0 0 0 1 2 1 0 1 1 1 1 1 0 3 0 1 0 1 0 0 16 0 1781.8658 P28838;H0Y9Q1 P28838 238 253 LAP3 Cytosol aminopeptidase yes no 2 0.00068154 43.628 By MS/MS 1 1.4009 1.2135 NaN 1 Median NaN NaN NaN 0 0 Median 1.4009 1.2135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470100 588150 881910 0 0 0 1470100 588150 881910 0 0 0 0 0 0 0 0 0 0 0 0 32181 2167 33832 168304 169544;169545 169545 2 SWITIPR DEFIIDESDQSFASRSWITIPRKAGSLKQR SDQSFASRSWITIPRKAGSLKQRTISPAES R S W P R K 0 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 1 0 0 0 0 7 0 871.49159 Q03188;H0Y8J2 Q03188 316 322 CENPC Centromere protein C yes no 2 0.037371 46.37 By MS/MS 1 0.93709 0.99863 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93709 0.99863 NaN 1 0 Median NaN NaN NaN 0 0 Median 1022700 540290 482390 0 0 0 0 0 0 0 0 0 0 0 0 1022700 540290 482390 0 0 0 32182 1162 33833 168305 169546 169546 1 SWLFGINK ______________________________ ______________________________ M S W N K G 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 0 8 0 963.5178 Q9NVI7 Q9NVI7 2 9 ATAD3A ATPase family AAA domain-containing protein 3A yes yes 1 0.001025 94.407 By MS/MS By MS/MS By matching 1 1 1 1.4451 1.3365 11.601 3 Plateau 1.2997 1.2561 NaN 1 0 Median 1.6068 1.3808 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2648 1.0962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5314400 2137600 3176800 1986200 810170 1176000 3280700 1309000 1971700 0 0 0 47525 18436 29089 0 0 0 0 0 0 32183 4133 33834 168306;168307;168308 169547;169548 169547 2 SWLLPVIR PLEIDGSEETLDFPRSWLLPVIRDHVQETR ETLDFPRSWLLPVIRDHVQETRLGFFTTYF R S W I R D 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 1 0 0 8 0 982.59639 Q5JTH9 Q5JTH9 567 574 RRP12 RRP12-like protein yes yes 2 0.017646 48.504 By matching By MS/MS By MS/MS 1 1 2 1.0346 1.0662 10.501 4 Median NaN NaN NaN 0 0 Median 1.0475 0.92714 NaN 1 0 Median 0.97737 1.0501 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0788 1.1379 7.0667 2 0 Median NaN NaN NaN 0 0 Median 4871300 2309900 2561300 0 0 0 611920 293420 318510 800810 409210 391600 0 0 0 3458500 1607300 1851200 0 0 0 32184 3052 33835 168309;168310;168311;168312 169549;169550;169551 169550 3 SWLSYSYQSR VRMQGQEAVLAMSSRSWLSYSYQSRFHLTP AMSSRSWLSYSYQSRFHLTPLSYETLEFAS R S W S R F 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 4 0 1 2 0 0 0 10 0 1275.5884 Q15393 Q15393 719 728 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00040063 93.649 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1 1.1217 1.1561 20.921 10 Median 1.5328 1.5048 34.112 3 2 Plateau NaN NaN NaN 0 0 Median 1.0437 1.12 11.81 4 0 Median 1.3261 1.1677 NaN 1 0 Median 1.202 1.2594 NaN 1 0 Median 0.94527 0.82047 NaN 1 0 Median 67845000 32037000 35808000 18974000 7694100 11280000 0 0 0 45543000 22876000 22667000 709500 297610 411890 2123400 918750 1204600 494640 250200 244440 32185 2946 33836 168313;168314;168315;168316;168317;168318;168319;168320;168321;168322 169552;169553;169554;169555;169556;169557;169558;169559;169560;169561 169554 10 SWNETLTSR EIIPQNQKAIASSLKSWNETLTSRLAALPE IASSLKSWNETLTSRLAALPENPPAIDWAY K S W S R L 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 2 2 1 0 0 0 0 9 0 1092.52 O75947;F5H608 O75947 33 41 ATP5H ATP synthase subunit d, mitochondrial yes no 2 0.00094944 88.948 By MS/MS By MS/MS 1 2 1.2535 1.1122 9.4623 2 Median 1.0945 1.0402 NaN 1 0 Median 1.4356 1.1892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53761000 23907000 29855000 30724000 14904000 15821000 23037000 9002900 14034000 0 0 0 0 0 0 0 0 0 0 0 0 32186 1711 33837 168323;168324;168325 169562;169563;169564;169565 169562 4 SWQDELAQQAEEGSAR ______________________________ WQDELAQQAEEGSARLREMLSVGLGFLRTE R S W A R L 3 1 0 1 0 3 3 1 0 0 1 0 0 0 0 2 0 1 0 0 0 0 16 0 1803.8024 Q86UE4 Q86UE4 5 20 MTDH Protein LYRIC yes yes 2 1.1608E-09 134.21 By MS/MS By matching By matching By matching 1 1 1 3 1.3429 1.1632 14.141 6 Median 0.96228 0.91049 NaN 1 0 Median 1.2243 1.0904 NaN 1 0 Median 1.3791 1.4008 NaN 1 0 Median 1.4328 1.1913 3.2079 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13315000 6300300 7014400 11134000 5310900 5823300 377280 184650 192630 1329500 629160 700340 473760 175620 298130 0 0 0 0 0 0 32187 3276 33838 168326;168327;168328;168329;168330;168331 169566;169567 169567 2 SWQGTADGGMMDR PRRDWGDHGRREDDRSWQGTADGGMMDRDH DRSWQGTADGGMMDRDHKRWQGGERSMSGH R S W D R D 1 1 0 2 0 1 0 3 0 0 0 0 2 0 0 1 1 1 0 0 0 0 13 0 1410.5656 Q15424 Q15424 832 844 SAFB Scaffold attachment factor B1 yes yes 2 0.00015573 94.616 By MS/MS 1 2.3349 2.4538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3349 2.4538 NaN 1 1 Median NaN NaN NaN 0 0 Median 4302100 1091200 3210900 0 0 0 0 0 0 0 0 0 0 0 0 4302100 1091200 3210900 0 0 0 32188 2951 33839 168332 169568 169568 1 SWQPSILPDGSIFSR PGYQTFEQELNKILRSWQPSILPDGSIFSR SWQPSILPDGSIFSRVEEDYLWRIKQLGSH R S W S R V 0 1 0 1 0 1 0 1 0 2 1 0 0 1 2 4 0 1 0 0 0 0 15 0 1688.8522 Q9UBW7 Q9UBW7 1181 1195 ZMYM2 Zinc finger MYM-type protein 2 yes yes 2 0.011951 44.765 By MS/MS 1 0.65635 0.71442 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65635 0.71442 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1678800 892830 785940 0 0 0 0 0 0 1678800 892830 785940 0 0 0 0 0 0 0 0 0 32189 4252 33840 168333 169569 169569 1 SWSEESLKPSDNEQGLPVFSGSPPMK EEKPGRKRAEAKGNRSWSEESLKPSDNEQG NEQGLPVFSGSPPMKSLSSTSAGGKKQAQP R S W M K S 0 0 1 1 0 1 3 2 0 0 2 2 1 1 4 6 0 1 0 1 0 0 26 1 2832.3276 Q6W2J9;H7BYY2;H7C2V9;A6NE70 Q6W2J9 1269 1294 BCOR BCL-6 corepressor yes no 3 0.0062235 24.459 By MS/MS 1 0.34663 0.3982 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34663 0.3982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2545700 2029900 515740 0 0 0 0 0 0 2545700 2029900 515740 0 0 0 0 0 0 0 0 0 32190 3191 33841 168334 169570 169570 1 SWSLATFR LLAWQSLRRDVQLIRSWSLATFRTLKPEEQ RDVQLIRSWSLATFRTLKPEEQRQALHSLE R S W F R T 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 1 0 0 0 0 8 0 966.49232 Q15149;H0YDN1 Q15149 1045 1052 PLEC Plectin yes no 2 0.0023499 114.43 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1 1.4099 1.2511 16.457 8 Median 1.2718 1.2367 NaN 1 0 Median 1.3867 1.1563 NaN 1 0 Median 1.0953 1.1846 12.18 2 0 Median 1.4548 1.2657 NaN 1 0 Median 1.5804 1.6636 11.189 2 0 Median 1.4336 1.1994 NaN 1 0 Median 47998000 20483000 27515000 21705000 9359800 12345000 6330100 2720100 3610000 13513000 5791800 7721200 893060 346140 546920 4892700 1976600 2916100 664830 288460 376380 32191 2933 33842 168335;168336;168337;168338;168339;168340;168341;168342 169571;169572;169573;169574;169575;169576 169572 6 SWSNIPFITVPLSR FRSHCIQPSVIRHVRSWSNIPFITVPLSRT RSWSNIPFITVPLSRTHGKSFAHRSELKHA R S W S R T 0 1 1 0 0 0 0 0 0 2 1 0 0 1 2 3 1 1 0 1 0 0 14 0 1615.8722 P54886 P54886 42 55 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0010179 51.927 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0041 0.94861 17.757 4 Median 0.80825 0.79773 NaN 1 0 Median 1.0573 0.92329 NaN 1 0 Median 0.95363 0.97462 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.173 1.2235 NaN 1 0 Median NaN NaN NaN 0 0 Median 12423000 6370800 6052700 2154100 1174200 979840 1782500 869100 913390 8241100 4219000 4022100 0 0 0 245750 108370 137380 0 0 0 32192 2488 33843 168343;168344;168345;168346 169577;169578;169579;169580;169581;169582;169583;169584 169583 8 SWTAADMAAQITK AYDGKDYIALNEDLRSWTAADMAAQITKRK LRSWTAADMAAQITKRKWEAAHEAEQLRAY R S W T K R 4 0 0 1 0 1 0 0 0 1 0 1 1 0 0 1 2 1 0 0 0 0 13 0 1392.6708 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0 P04439 156 168 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain no no 2 0.002324 65.5 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32193 348 33844 168347 169585 169585 1 SWTAADTAAQITQR AYDGKDYIALNEDLRSWTAADTAAQITQRK RSWTAADTAAQITQRKWEAAREAEQRRAYL R S W Q R K 4 1 0 1 0 2 0 0 0 1 0 0 0 0 0 1 3 1 0 0 0 0 14 0 1518.7427 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A1W2PRU9;A0A140T9L3;A0A140TA05;A0A140T942;A0A140T9E1;A0A140T9T1;A0A1W2PPR8;P01889;F6U0H7;A0A140TA21;A0A140T9D4;A0A140T951 A0A1W2PPR8 156 169 HLA-C;HLA-B HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 2;3 7.077E-07 136.5 By MS/MS By matching 2 1 0.98406 0.97566 1.3061 3 Median 0.97558 0.97281 1.8316 2 0 Median 1.0923 0.97566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36651000 18262000 18389000 36356000 18091000 18265000 295250 170700 124550 0 0 0 0 0 0 0 0 0 0 0 0 32194 314;339 33845 168348;168349;168350 169586;169587;169588 169586 3 SWVFTYAQR DVDMSRDSCIGVDDRSWVFTYAQRKWYTML IGVDDRSWVFTYAQRKWYTMLANEKAPVEG R S W Q R K 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 9 0 1156.5665 Q8WW59 Q8WW59 121 129 SPRYD4 SPRY domain-containing protein 4 yes yes 2 0.06407 27.254 By matching By MS/MS By matching 1 1 1 1.1587 1.0823 11.149 3 Median 0.9518 0.94412 NaN 1 0 Median 1.411 1.1776 NaN 1 0 Median 1.1587 1.0823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2904100 1308200 1596000 1189400 563160 626250 751710 297880 453830 963010 447140 515870 0 0 0 0 0 0 0 0 0 32195 3506 33846 168351;168352;168353 169589 169589 1 SWVGFSGGQHHTVCMDSEGK CFIPQNLTSFKNSTKSWVGFSGGQHHTVCM SGGQHHTVCMDSEGKAYSLGRAEYGRLGLG K S W G K A 0 0 0 1 1 1 1 4 2 0 0 1 1 1 0 3 1 1 0 2 0 0 20 0 2204.9368 P18754;C9JW69 P18754 295 314 RCC1 Regulator of chromosome condensation yes no 3 2.7291E-07 51.566 By matching By MS/MS 1 1 1.3946 1.3566 43.132 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8544 1.8404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0488 1 NaN 1 0 Median NaN NaN NaN 0 0 Median 11192000 5342900 5848900 0 0 0 0 0 0 2962400 1207100 1755300 0 0 0 8229500 4135800 4093700 0 0 0 32196 2061 33847 168354;168355 169590;169591 169590 2 SWVIDQK DKKLKPEYDIMCKVKSWVIDQKKPVRFYHD YDIMCKVKSWVIDQKKPVRFYHDWNDKEIE K S W Q K K 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 7 0 874.45487 J3KQ32;Q9NTK5;C9JCJ9 J3KQ32 211 217 OLA1 Obg-like ATPase 1 yes no 2 0.020057 60.788 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0589 0.91367 16.93 6 Median 1.1337 1.0661 5.9301 2 0 Median 1.0589 0.91367 3.484 2 0 Median NaN NaN NaN 0 0 Median 0.8185 0.6878 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98202 0.82083 NaN 1 0 Median 32139000 14458000 17681000 9813600 4524600 5289000 20498000 9073100 11425000 0 0 0 1433600 626050 807540 0 0 0 393850 234440 159410 32197 1315 33848 168356;168357;168358;168359;168360;168361 169592;169593;169594 169592 3 SWVNQMESQTGEASK DKSLNIKTDPVDIYKSWVNQMESQTGEASK SWVNQMESQTGEASKLPYDVTPEQALAHEE K S W S K L 1 0 1 0 0 2 2 1 0 0 0 1 1 0 0 3 1 1 0 1 0 0 15 0 1680.7413 P46940;A0A0J9YXZ5;H0YLE8 P46940 1097 1111 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 5.1851E-09 155.02 By MS/MS By MS/MS By matching 2 4 2 1.0645 1.0019 11.088 8 Median 1.0645 1.0405 2.526 2 0 Median 1.076 0.95803 9.6658 4 0 Median NaN NaN NaN 0 0 Median 1.1002 0.95539 21.343 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50438000 23017000 27420000 34384000 15675000 18709000 15386000 7024900 8360800 0 0 0 667650 317040 350620 0 0 0 0 0 0 32198 2350 33849;33850 168362;168363;168364;168365;168366;168367;168368;168369 169595;169596;169597;169598;169599 169596 1077 5 SWVNQMESQTGEASKLPYDVTPEQALAHEEVK DKSLNIKTDPVDIYKSWVNQMESQTGEASK YDVTPEQALAHEEVKTRLDSSIRNMRAVTD K S W V K T 3 0 1 1 0 3 5 1 1 0 2 2 1 0 2 3 2 1 1 3 0 0 32 1 3600.7042 P46940;A0A0J9YXZ5;H0YLE8 P46940 1097 1128 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3;4 2.5293E-09 42.121 By MS/MS 2 0.79881 0.78302 10.361 2 Median 0.79881 0.78302 10.361 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12195000 6410200 5784800 12195000 6410200 5784800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32199 2350 33851 168370;168371 169600;169601;169602;169603 169600 4 SYAEELAK GEWAVVTGSTDGIGKSYAEELAKHGMKVVL STDGIGKSYAEELAKHGMKVVLISRSKDKL K S Y A K H 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 8 0 909.44436 Q53GQ0;A0A1B0GV93;A0A1B0GVY6 Q53GQ0 65 72 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.0072183 67.981 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1916 1.0924 27.465 4 Median 1.2242 1.1285 NaN 1 0 Median 1.2731 1.0685 NaN 1 0 Median 1.1599 1.1169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80559 0.63888 NaN 1 0 Median 20535000 9317900 11217000 12099000 5571900 6527200 5627500 2246200 3381300 1698900 724250 974600 0 0 0 0 0 0 1109500 775540 333960 32200 3030 33852 168372;168373;168374;168375 169604;169605;169606;169607 169604 4 SYAQNVTVWIKPSGLQTDVQK DDNKSPFPLQPKNKRSYAQNVTVWIKPSGL TVWIKPSGLQTDVQKILRNARKLPEKTQTF R S Y Q K I 1 0 1 1 0 3 0 1 0 1 1 2 0 0 1 2 2 1 1 3 0 0 21 1 2361.2329 H3BRY6;B4DVT3;B4DJL6;Q96SY0 H3BRY6 348 368 VWA9 von Willebrand factor A domain-containing protein 9 yes no 3 9.8329E-07 46.027 By MS/MS 1 0.90245 0.9423 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90245 0.9423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11206000 6273200 4932800 0 0 0 0 0 0 11206000 6273200 4932800 0 0 0 0 0 0 0 0 0 32201 593 33853 168376 169608;169609 169608 2 SYCAEIAHNVSSK VHNVKELEVLLMCNKSYCAEIAHNVSSKNR NKSYCAEIAHNVSSKNRKAIVERAAQLAIR K S Y S K N 2 0 1 0 1 0 1 0 1 1 0 1 0 0 0 3 0 0 1 1 0 0 13 0 1464.6667 D3YTB1;F8W727;P62910 D3YTB1 94 106 RPL32 60S ribosomal protein L32 yes no 2;3 0.00027252 78.692 By MS/MS By MS/MS By matching 2 6 1 1.211 1.0608 14.858 9 Median 1.1947 1.1293 0.41616 2 0 Median 1.226 1.0399 9.5453 6 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4919 1.5769 NaN 1 0 Median NaN NaN NaN 0 0 Median 39664000 16970000 22694000 10454000 4124100 6330000 28946000 12740000 16206000 0 0 0 0 0 0 263470 105690 157780 0 0 0 32202 798 33854 168377;168378;168379;168380;168381;168382;168383;168384;168385 169610;169611;169612;169613;169614;169615;169616;169617 169616 8 SYDVPPPPMEPDHPFYSNISK TAAKHGEAQVKIWRRSYDVPPPPMEPDHPF PPMEPDHPFYSNISKDRRYADLTEDQLPSC R S Y S K D 0 0 1 2 0 0 1 0 1 1 0 1 1 1 6 3 0 0 2 1 0 0 21 0 2416.1045 P18669;Q8N0Y7 P18669 118 138 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 yes no 2;3 1.9773E-28 162.88 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 0.46868 0.42242 8.3812 7 Median 0.4606 0.46596 10.868 3 1 Plateau 0.48747 0.41137 3.7469 2 0 Median 0.46885 0.43946 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.36887 0.37899 NaN 1 0 Median NaN NaN NaN 0 0 Median 346570000 232080000 114500000 308510000 206950000 101560000 22587000 14664000 7923700 14313000 9688100 4624400 0 0 0 1165300 775260 390030 0 0 0 32203 2060 33855;33856 168386;168387;168388;168389;168390;168391;168392 169618;169619;169620;169621;169622;169623;169624;169625;169626;169627 169618 827 10 SYEALVQHVIEDHER EESSIHCKRCLFMPKSYEALVQHVIEDHER SYEALVQHVIEDHERIGYQVTAMIGHTNVV K S Y E R I 1 1 0 1 0 1 3 0 2 1 1 0 0 0 0 1 0 0 1 2 0 0 15 0 1823.8802 Q9H2P0;A0A2R8Y6X0 Q9H2P0 232 246 ADNP Activity-dependent neuroprotector homeobox protein yes no 3 9.2809E-05 55.173 By MS/MS By matching By MS/MS 3 1 1 0.98586 0.92637 10.057 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94444 0.92637 11.445 3 0 Median 0.99123 0.88258 NaN 1 0 Median 0.98586 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median 10999000 5803300 5195300 0 0 0 0 0 0 7665100 4163000 3502100 119570 60355 59216 3213900 1579900 1634000 0 0 0 32204 3946 33857 168393;168394;168395;168396;168397 169628;169629;169630;169631 169628 4 SYEAYVLNIVR QIQKTEISFRPNDPKSYEAYVLNIVRFLEK NDPKSYEAYVLNIVRFLEKYKDSAQRDDMI K S Y V R F 1 1 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 2 2 0 0 11 0 1325.698 P05026;V9GYR2 P05026 97 107 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 2 0.0001696 96.711 By MS/MS By MS/MS 3 2 1.1468 1.0067 47.495 5 Median 1.0429 1.0121 60.806 3 0 Median 1.1711 0.98598 2.9415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27619000 11688000 15931000 16331000 7153300 9177200 11288000 4534300 6754100 0 0 0 0 0 0 0 0 0 0 0 0 32205 1858 33858 168398;168399;168400;168401;168402 169632;169633;169634 169634 3 SYEIASLVR FEIEYQGDPELQPIRSYEIASLVRTLFRLS ELQPIRSYEIASLVRTLFRLSSAINHRFAG R S Y V R T 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 1 0 0 9 0 1036.5553 Q9NXE4;H7C1Q6 Q9NXE4 737 745 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0004831 121.62 By matching By MS/MS By matching 1 2 1 1.0973 1.132 9.4523 4 Median NaN NaN NaN 0 0 Median 1.0681 1.0759 NaN 1 0 Median 1.0397 1.0883 14.17 2 0 Median 1.4001 1.1911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12887000 6187400 6699300 0 0 0 169170 96257 72912 12236000 5880700 6355500 481390 210460 270940 0 0 0 0 0 0 32206 4162 33859 168403;168404;168405;168406 169635;169636;169637 169637 3 SYELPDGQVITIGNER EQEMATAASSSSLEKSYELPDGQVITIGNE YELPDGQVITIGNERFRCPEALFQPSFLGM K S Y E R F 0 1 1 1 0 1 2 2 0 2 1 0 0 0 1 1 1 0 1 1 0 0 16 0 1789.8846 P63267;P62736;P63261;P60709;A0A2R8Y793;A0A2R8YEA7;P68032;P68133;Q6S8J3;A5A3E0;Q9BYX7;Q562R1 P63261 239 254 ACTG2;ACTA2;ACTG1;ACTB;ACTC1;ACTA1;POTEE;POTEF;POTEKP;ACTBL2 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Beta-actin-like protein 2 no no 2;3 3.212E-142 257.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 16 14 11 17 14 0.9607 0.85124 30.088 88 Median 0.93409 0.88323 48.962 17 7 Median 1.0052 0.858 42.998 15 2 Median 0.74593 0.7929 14.05 14 2 Median 1.0356 0.88469 10.672 11 0 Median 0.87134 0.86684 21.764 17 2 Median 1.0419 0.85175 6.4531 14 0 Median 10672000000 5561900000 5110500000 3048100000 1502700000 1545400000 2569600000 1242300000 1327300000 4618800000 2594000000 2024800000 175690000 83652000 92039000 226910000 123300000 103610000 33237000 15838000 17398000 32207 2625;2630;2595;3181;3035 33860 168407;168408;168409;168410;168411;168412;168413;168414;168415;168416;168417;168418;168419;168420;168421;168422;168423;168424;168425;168426;168427;168428;168429;168430;168431;168432;168433;168434;168435;168436;168437;168438;168439;168440;168441;168442;168443;168444;168445;168446;168447;168448;168449;168450;168451;168452;168453;168454;168455;168456;168457;168458;168459;168460;168461;168462;168463;168464;168465;168466;168467;168468;168469;168470;168471;168472;168473;168474;168475;168476;168477;168478;168479;168480;168481;168482;168483;168484;168485;168486;168487;168488;168489;168490;168491;168492;168493;168494;168495 169638;169639;169640;169641;169642;169643;169644;169645;169646;169647;169648;169649;169650;169651;169652;169653;169654;169655;169656;169657;169658;169659;169660;169661;169662;169663;169664;169665;169666;169667;169668;169669;169670;169671;169672;169673;169674;169675;169676;169677;169678;169679;169680;169681;169682;169683;169684;169685;169686;169687;169688;169689;169690;169691;169692;169693;169694;169695;169696;169697;169698;169699;169700;169701;169702;169703;169704;169705;169706;169707;169708;169709;169710;169711;169712;169713;169714;169715;169716;169717;169718;169719;169720;169721;169722;169723;169724;169725;169726;169727;169728;169729;169730;169731;169732;169733;169734;169735;169736;169737;169738;169739;169740;169741;169742;169743;169744;169745;169746;169747;169748;169749;169750;169751;169752;169753;169754;169755;169756;169757;169758;169759;169760;169761;169762;169763;169764;169765;169766;169767;169768;169769;169770;169771;169772;169773;169774;169775;169776;169777;169778;169779;169780 169752 142 SYELQESNVR DPATHNEPGVRLKARSYELQESNVRLKLTI RLKARSYELQESNVRLKLTIVDTVGFGDQI R S Y V R L 0 1 1 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 10 0 1223.5782 D6RGI3;D6RER5;Q9NVA2;D6RDU5;D6RDP1;D6R9Y6 D6RGI3 84 93 SEPT11 Septin-11 yes no 2 3.2347E-10 170.22 By MS/MS By MS/MS 1 2 1.3442 1.1486 6.5734 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0728 1.0398 NaN 1 0 Median 1.3569 1.1628 1.7407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118260000 55289000 62974000 0 0 0 0 0 0 56009000 26959000 29050000 62254000 28330000 33924000 0 0 0 0 0 0 32208 822 33861 168496;168497;168498 169781;169782;169783;169784;169785;169786 169781 6 SYENELDPLK TSKEAQLTSSKEIVKSYENELDPLKNRLKE KEIVKSYENELDPLKNRLKEIEHNLSKIMK K S Y L K N 0 0 1 1 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 10 0 1206.5768 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 243 252 RAD50 DNA repair protein RAD50 yes no 2 0.0010092 88.948 By matching By MS/MS By MS/MS 1 1 1 0.9354 0.93018 14.489 3 Median NaN NaN NaN 0 0 Median 1.2779 1.1243 NaN 1 0 Median 0.87095 0.93018 NaN 1 1 Median 0.9354 0.84579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16906000 8061700 8844700 0 0 0 1969400 798550 1170800 12302000 6000200 6301900 2634900 1262900 1371900 0 0 0 0 0 0 32209 3561 33862 168499;168500;168501 169787;169788;169789 169787 3 SYENELDPLKNR TSKEAQLTSSKEIVKSYENELDPLKNRLKE IVKSYENELDPLKNRLKEIEHNLSKIMKLD K S Y N R L 0 1 2 1 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 1 1476.7209 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 243 254 RAD50 DNA repair protein RAD50 yes no 2;3 1.5018E-05 114.4 By MS/MS By MS/MS By matching 2 2 1 0.83097 0.94253 10.082 5 Median 0.9934 1.002 2.9346 2 1 Median NaN NaN NaN 0 0 Median 0.82413 0.93456 1.2007 2 1 Median NaN NaN NaN 0 0 Median 0.69422 0.7855 NaN 1 0 Median NaN NaN NaN 0 0 Median 57640000 31687000 25953000 11520000 6571700 4948000 0 0 0 40985000 21949000 19035000 0 0 0 5135900 3166400 1969500 0 0 0 32210 3561 33863 168502;168503;168504;168505;168506 169790;169791;169792;169793;169794 169794 5 SYEPLEDPGVK VGRILDWHVANTDKKSYEPLEDPGVKSVTK TDKKSYEPLEDPGVKSVTKIYNYYKKFSYK K S Y V K S 0 0 0 1 0 0 2 1 0 0 1 1 0 0 2 1 0 0 1 1 0 0 11 0 1232.5925 P37837;F2Z393 P37837 205 215 TALDO1 Transaldolase yes no 2 0.00016096 90.629 By MS/MS By MS/MS By matching 2 2 1 0.84094 0.76374 7.2128 5 Median 0.78411 0.71508 9.3115 2 0 Median 0.92764 0.7829 5.3484 2 0 Median 0.80636 0.77605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 201690000 113840000 87859000 110480000 65666000 44816000 79220000 41513000 37707000 11991000 6656100 5335000 0 0 0 0 0 0 0 0 0 32211 2270 33864 168507;168508;168509;168510;168511 169795;169796;169797;169798 169797 4 SYESLFIR SLPGAEDYIKDLETKSYESLFIRAVRAYNG IKDLETKSYESLFIRAVRAYNGENWRTSIT K S Y I R A 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 0 8 0 1013.5182 C9JP16;O75718 C9JP16 205 212 CRTAP Cartilage-associated protein yes no 2 0.0069954 68.915 By matching By matching By MS/MS By matching By matching By matching 1 2 2 2 1 1 1.1804 1.0766 16.403 9 Median 1.1804 1.1714 NaN 1 0 Median 1.3594 1.1758 0.050311 2 0 Median 1.0755 1.102 18.695 2 0 Median 1.202 1.0532 3.1043 2 0 Median 1.054 1.0657 NaN 1 0 Median 0.83907 0.7246 NaN 1 0 Median 13936000 6774500 7161900 3911900 2029500 1882400 2154600 935130 1219500 5953500 2887800 3065700 626010 281740 344270 1221600 599790 621840 68785 40568 28217 32212 714 33865 168512;168513;168514;168515;168516;168517;168518;168519;168520 169799;169800 169800 2 SYESQIEVMAAEVAK TSYKQQLEAVNEAIKSYESQIEVMAAEVAK SYESQIEVMAAEVAKNKESVNKAQEEVTKQ K S Y A K N 3 0 0 0 0 1 3 0 0 1 0 1 1 0 0 2 0 0 1 2 0 0 15 0 1653.792 O95347 O95347 849 863 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 9.8614E-06 77.64 By MS/MS By MS/MS By matching 2 1 1 1.085 1.1492 8.1368 4 Median 1.1302 1.104 13.408 2 2 Median NaN NaN NaN 0 0 Median 1.05 1.1358 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1212 1.1628 NaN 1 0 Median NaN NaN NaN 0 0 Median 15618000 7473900 8144400 9431400 4528300 4903100 0 0 0 5490400 2577300 2913100 0 0 0 696500 368300 328190 0 0 0 32213 1766 33866 168521;168522;168523;168524 169801;169802;169803;169804 169801 4 SYESQMVIRPHK EHPSVPESPEFVRVRSYESQMVIRPHKSFD RVRSYESQMVIRPHKSFDENGFDYLLTYSD R S Y H K S 0 1 0 0 0 1 1 0 1 1 0 1 1 0 1 2 0 0 1 1 0 0 12 1 1473.7398 Q9NQZ5 Q9NQZ5 266 277 STARD7 StAR-related lipid transfer protein 7, mitochondrial yes yes 3 0.0033957 36.982 By MS/MS By MS/MS 1 1 1.1432 1.0861 12.236 2 Median 1.0012 0.99606 NaN 1 0 Median 1.3053 1.1842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5609900 2420500 3189400 3574600 1542500 2032100 2035300 878030 1157300 0 0 0 0 0 0 0 0 0 0 0 0 32214 4072 33867 168525;168526 169805;169806 169806 2 SYEVTVENFLR MELNVYGDDVEVDYRSYEVTVENFLRVLTG VDYRSYEVTVENFLRVLTGRIPPSTPRSKR R S Y L R V 0 1 1 0 0 0 2 0 0 0 1 0 0 1 0 1 1 0 1 2 0 0 11 0 1355.6721 Q92643;A6NEM5 Q92643 123 133 PIGK GPI-anchor transamidase yes no 2 0.00022785 73.985 By MS/MS 1 1.3873 1.1849 NaN 1 Median NaN NaN NaN 0 0 Median 1.3873 1.1849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1770800 701390 1069400 0 0 0 1770800 701390 1069400 0 0 0 0 0 0 0 0 0 0 0 0 32215 510 33868 168527 169807;169808 169807 2 SYFLIVR AREQRDCEVIERLIKSYFLIVRKNIQDSVP EVIERLIKSYFLIVRKNIQDSVPKAVMHFL K S Y V R K 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 0 7 0 896.51199 O00429 O00429 653 659 DNM1L Dynamin-1-like protein yes yes 2 0.016999 66.994 By MS/MS By matching By matching By matching 2 1 1 1 1.0461 0.96513 21.034 5 Median 0.92356 0.8893 11.572 2 0 Median 1.2308 1.1137 NaN 1 0 Median 1.354 1.4193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0461 0.92507 NaN 1 0 Median 7713400 3514800 4198600 5941800 2852000 3089900 384410 167780 216630 1218600 427900 790690 0 0 0 0 0 0 168560 67153 101410 32216 1463 33869 168528;168529;168530;168531;168532 169809;169810;169811;169812 169811 4 SYFSEEGIGYNIIR NILALSPPAQNLLLKSYFSEEGIGYNIIRV KSYFSEEGIGYNIIRVPMASCDFSIRTYTY K S Y I R V 0 1 1 0 0 0 2 2 0 3 0 0 0 1 0 2 0 0 2 0 0 0 14 0 1646.794 A0A0G2JNZ5;A0A0G2JLB3;P04062 A0A0G2JNZ5 59 72 GBA Glucosylceramidase yes no 2 0.00014654 81.865 By MS/MS 2 1.1649 1.108 9.953 2 Median 1.1649 1.108 9.953 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22627000 10570000 12057000 22627000 10570000 12057000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32217 281 33870 168533;168534 169813;169814 169814 2 SYFSSFTDDIISQPMLK YKNREPLMPSPQFIKSYFSSFTDDIISQPM FSSFTDDIISQPMLKGEKSDEDKDKEGEAL K S Y L K G 0 0 0 2 0 1 0 0 0 2 1 1 1 2 1 4 1 0 1 0 0 0 17 0 1977.9394 O94826 O94826 259 275 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 0.034898 23.236 By MS/MS By matching 1 1 1.0043 0.91935 11.353 2 Median 0.8842 0.84843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1408 0.99619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4524300 2232600 2291700 4395100 2178700 2216400 0 0 0 0 0 0 129180 53858 75320 0 0 0 0 0 0 32218 1728 33871 168535;168536 169815 169815 1 SYGANFSWNKR SYDIEERKVPKPKSKSYGANFSWNKRTRVS PKSKSYGANFSWNKRTRVSTK_________ K S Y K R T 1 1 2 0 0 0 0 1 0 0 0 1 0 1 0 2 0 1 1 0 0 0 11 1 1328.6262 O43181 O43181 159 169 NDUFS4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial yes yes 2 0.00028615 103.55 By MS/MS By matching By matching 3 1 1 1.1862 1.0991 167.61 5 Median 25.89 26.371 189.67 3 0 Plateau 6.7819 5.9719 NaN 1 0 Median 0.43517 0.41892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199790000 22888000 176900000 157930000 13296000 144630000 28079000 2420100 25659000 13783000 7171600 6611400 0 0 0 0 0 0 0 0 0 32219 1558 33872 168537;168538;168539;168540;168541 169816 169816 1 SYGATATSPGER SYLTWGVLQERVMTRSYGATATSPGERFTD MTRSYGATATSPGERFTDSQFLVLMNRVLA R S Y E R F 2 1 0 0 0 0 1 2 0 0 0 0 0 0 1 2 2 0 1 0 0 0 12 0 1195.5469 Q8TB61 Q8TB61 137 148 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 6.0038E-05 86.624 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32220 3458 33873 168542 169817 169817 1 SYGFNAAR TITFLYKFIKGACPKSYGFNAARLANLPEE IKGACPKSYGFNAARLANLPEEVIQKGHRK K S Y A R L 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 8 0 884.41407 P52701;A0A494C0M1;A0A087WYT6 P52701 1297 1304 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.014536 50.898 By matching By matching By MS/MS 2 1 2 0.95903 1.0532 15.85 5 Median 1.079 1.048 25.045 2 0 Median 1.2445 1.0646 NaN 1 0 Median 0.90202 0.94514 15.315 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7790900 3669700 4121200 1850600 749590 1101000 2360000 1072500 1287500 3580300 1847600 1732700 0 0 0 0 0 0 0 0 0 32221 2453 33874 168543;168544;168545;168546;168547 169818;169819 169819 2 SYGIPFIETSAK PTRTVDTKQAHELAKSYGIPFIETSAKTRQ LAKSYGIPFIETSAKTRQGVEDAFYTLVRE K S Y A K T 1 0 0 0 0 0 1 1 0 2 0 1 0 1 1 2 1 0 1 0 0 0 12 0 1311.6711 P01111;P01116 P01111 136 147 NRAS;KRAS GTPase NRas;GTPase KRas;GTPase KRas, N-terminally processed no no 2 0.0089219 57.348 By MS/MS By MS/MS 1 1 0.94752 0.92916 7.6203 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93738 0.88042 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.95776 0.9806 NaN 1 0 Median NaN NaN NaN 0 0 Median 11059000 5323500 5735800 0 0 0 0 0 0 8308700 3840400 4468300 0 0 0 2750500 1483100 1267500 0 0 0 32222 1831;1833 33875 168548;168549 169820;169821;169822 169820 3 SYGPAPGAGHVQEESNLSLQALESR ELPTCMYRLPNVHGRSYGPAPGAGHVQEES VQEESNLSLQALESRQDDILKRLYELKAAV R S Y S R Q 3 1 1 0 0 2 3 3 1 0 3 0 0 0 2 4 0 0 1 1 0 0 25 0 2596.2518 Q13155 Q13155 34 58 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes yes 3 2.5969E-17 67.827 By MS/MS By matching By matching By matching 1 1 1 1 1.8193 1.706 59.611 4 Median 2.0075 1.9976 NaN 1 0 Median 0.903 0.75884 NaN 1 0 Median 3.1684 3.1348 NaN 1 0 Median 1.6489 1.457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16699000 6221900 10477000 9301500 3766700 5534700 2284600 1152300 1132200 4324300 999130 3325100 789110 303740 485380 0 0 0 0 0 0 32223 2792 33876 168550;168551;168552;168553 169823 169823 1 SYGRPPPDVEGMTSLK ______________________________ YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR M S Y L K V 0 1 0 1 0 0 1 2 0 0 1 1 1 0 3 2 1 0 1 1 0 0 16 1 1732.8454 J3QL05;J3KP15;Q01130 J3QL05 2 17 SRSF2 Serine/arginine-rich splicing factor 2 yes no 2 4.9489E-20 184.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 3 4 6 7 0.71045 0.68397 17.784 27 Median 0.66261 0.6747 22.039 3 0 Median 0.77476 0.68456 2.4718 4 0 Median 0.64124 0.6908 18.007 3 0 Plateau 0.81095 0.7653 14.306 4 0 Median 0.63663 0.69357 19.994 6 0 Median 0.78796 0.63309 23.06 7 0 Median 369010000 219280000 149730000 76890000 45213000 31677000 12685000 7141300 5543900 173160000 105110000 68048000 23986000 13131000 10855000 78451000 46555000 31896000 3843800 2130500 1713300 32224 1307 33877;33878 168554;168555;168556;168557;168558;168559;168560;168561;168562;168563;168564;168565;168566;168567;168568;168569;168570;168571;168572;168573;168574;168575;168576;168577;168578;168579;168580 169824;169825;169826;169827;169828;169829;169830;169831;169832;169833;169834;169835;169836;169837;169838;169839;169840;169841;169842;169843;169844;169845;169846;169847;169848;169849;169850;169851 169839 431 28 SYGRPPPDVEGMTSLKVDNLTYR ______________________________ VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR M S Y Y R T 0 2 1 2 0 0 1 2 0 0 2 1 1 0 3 2 2 0 2 2 0 0 23 2 2594.2799 J3QL05;J3KP15;Q01130 J3QL05 2 24 SRSF2 Serine/arginine-rich splicing factor 2 yes no 3 3.9015E-12 58.904 By matching By matching By MS/MS 1 1 2 0.76911 0.83082 19.592 4 Median NaN NaN NaN 0 0 Median 1.1886 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87767 0.89782 NaN 1 0 Median 0.64505 0.73582 6.2041 2 0 Median NaN NaN NaN 0 0 Median 25102000 14377000 10724000 0 0 0 216910 80785 136120 0 0 0 276970 140920 136050 24608000 14156000 10452000 0 0 0 32225 1307 33879;33880 168581;168582;168583;168584 169852;169853;169854;169855 169852 431 4 SYHEEFNPPKEPMKDDITGEPLIR IRRITGRLIHPKSGRSYHEEFNPPKEPMKD KEPMKDDITGEPLIRRSDDNEKALKIRLQA R S Y I R R 0 1 1 2 0 0 4 1 1 2 1 2 1 1 4 1 1 0 1 0 0 0 24 2 2841.3643 F8W1A4;P54819;F8VY04 F8W1A4 151 174 AK2 Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed yes no 3;4;5 1.8797E-29 116.94 By MS/MS By matching 3 2 0.55402 0.58992 29.923 5 Median 0.55133 0.58705 7.9378 3 0 Plateau 1.0448 0.90585 17.227 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88790000 52728000 36061000 86052000 51462000 34590000 2737400 1266400 1471000 0 0 0 0 0 0 0 0 0 0 0 0 32226 1081 33881 168585;168586;168587;168588;168589 169856;169857;169858;169859 169859 4 SYHLSELVQQILK ICDVEISAKELIRCKSYHLSELVQQILKTE CKSYHLSELVQQILKTERVVIPMENIQNMY K S Y L K T 0 0 0 0 0 2 1 0 1 1 3 1 0 0 0 2 0 0 1 1 0 0 13 0 1556.8562 A0A087WU64;A6NMQ1;P09884 A0A087WU64 704 716 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 4.1866E-05 90.108 By matching By MS/MS 1 2 1.0966 0.96299 31.016 3 Median 1.7469 1.6441 NaN 1 0 Median 1.0916 0.96079 0.32333 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20753000 9110300 11643000 1338200 560870 777290 19415000 8549400 10865000 0 0 0 0 0 0 0 0 0 0 0 0 32227 26 33882 168590;168591;168592 169860;169861;169862 169860 3 SYIEYQLTPTNTNR VVADPRKGSKMYGLKSYIEYQLTPTNTNRS KSYIEYQLTPTNTNRSVNHRYKHFDWLYER K S Y N R S 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 1 3 0 2 0 0 0 14 0 1698.8213 Q9Y5X1 Q9Y5X1 268 281 SNX9 Sorting nexin-9 yes yes 2 1.3368E-23 199.67 By MS/MS By MS/MS 3 3 0.74755 0.71267 11.954 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77487 0.7858 8.5242 3 0 Plateau 0.75115 0.65394 16.549 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31016000 17976000 13040000 0 0 0 0 0 0 27560000 16130000 11430000 3456300 1846200 1610000 0 0 0 0 0 0 32228 4470 33883 168593;168594;168595;168596;168597;168598 169863;169864;169865;169866;169867;169868;169869 169864 6 SYIFEGALGMSNR ALMITVPIGLYFTTKSYIFEGALGMSNRDS TKSYIFEGALGMSNRDSYFYAAIVAVVAVH K S Y N R D 1 1 1 0 0 0 1 2 0 1 1 0 1 1 0 2 0 0 1 0 0 0 13 0 1443.6816 Q3ZAQ7 Q3ZAQ7 50 62 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 yes yes 2 0.00034725 76.143 By MS/MS By matching By matching By matching 2 1 1 1 1.5099 1.4718 24.434 5 Median 1.2789 1.2464 23.51 2 0 Median 2.0984 1.7749 NaN 1 0 Median 1.8708 1.8974 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0545 1.2396 NaN 1 0 Median NaN NaN NaN 0 0 Median 13119000 5733200 7385500 9365000 4240600 5124300 1538400 445020 1093400 891260 397400 493860 0 0 0 1324100 650160 673940 0 0 0 32229 3015 33884;33885 168599;168600;168601;168602;168603 169870;169871 169871 1650 2 SYIPGQPVTAVVQR ______________________________ MSYIPGQPVTAVVQRVEIHKLRQGENLILG M S Y Q R V 1 1 0 0 0 2 0 1 0 1 0 0 0 0 2 1 1 0 1 3 0 0 14 0 1513.8253 O14907;A0A087X282 O14907 2 15 TAX1BP3 Tax1-binding protein 3 yes no 2;3 4.884E-07 117.52 By MS/MS By MS/MS By MS/MS 2 1 1 0.83836 0.82041 89.457 4 Median 1.9944 1.9125 121.48 2 1 Median NaN NaN NaN 0 0 Median 0.82109 0.83081 NaN 1 0 Median 0.84133 0.66099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58504000 25654000 32850000 35289000 13678000 21611000 0 0 0 17748000 9100200 8647800 5467000 2875900 2591100 0 0 0 0 0 0 32230 1501 33886;33887 168604;168605;168606;168607 169872;169873;169874;169875;169876;169877;169878;169879;169880 169875 9 SYIQGGRPFTK SEWIKHRPQKVGAYRSYIQGGRPFTKKFRS GAYRSYIQGGRPFTKKFRSAGHGRDSDKRP R S Y T K K 0 1 0 0 0 1 0 2 0 1 0 1 0 1 1 1 1 0 1 0 0 0 11 1 1252.6564 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 635 645 WIZ Protein Wiz yes no 3 0.0096603 31.431 By MS/MS 1 0.75428 0.86001 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75428 0.86001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1824500 969510 854970 0 0 0 0 0 0 1824500 969510 854970 0 0 0 0 0 0 0 0 0 32231 656 33888 168608 169881;169882 169881 2 SYIQSLPQTPR PGTEFVQKLNDKAAKSYIQSLPQTPRKDFT KAAKSYIQSLPQTPRKDFTQLFPRASPQAA K S Y P R K 0 1 0 0 0 2 0 0 0 1 1 0 0 0 2 2 1 0 1 0 0 0 11 0 1288.6776 O15264 O15264 257 267 MAPK13 Mitogen-activated protein kinase 13 yes yes 2 0.0024956 76.827 By matching By MS/MS By MS/MS 1 1 2 0.82064 0.79655 11.043 4 Median 0.65924 0.65566 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71381 0.77818 NaN 1 0 Median 0.95673 0.8271 2.023 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20722000 11289000 9433000 3960900 2519300 1441600 0 0 0 11194000 5956400 5237600 5567100 2813400 2753700 0 0 0 0 0 0 32232 1535 33889 168609;168610;168611;168612 169883;169884;169885 169884 2 SYIYSGSHDGHINYWDSETGENDSFAGK SKSIQCLTVHKNGGKSYIYSGSHDGHINYW YWDSETGENDSFAGKGHTNQVSRMTVDESG K S Y G K G 1 0 2 3 0 0 2 4 2 2 0 1 0 1 0 5 1 1 3 0 0 0 28 0 3135.3119 O75083 O75083 335 362 WDR1 WD repeat-containing protein 1 yes yes 3;4 2.776E-09 46.678 By MS/MS By matching By matching By matching 3 1 1 1 0.99961 0.91785 19.576 6 Median 1.0165 0.96729 23.618 3 0 Median 0.98301 0.87094 NaN 1 0 Median 1.0665 1.0756 NaN 1 0 Median 0.84621 0.72517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27768000 13216000 14552000 22325000 10302000 12023000 636340 265000 371350 4497500 2476700 2020700 309240 172480 136760 0 0 0 0 0 0 32233 1643 33890 168613;168614;168615;168616;168617;168618 169886;169887;169888;169889 169886 4 SYKPVFWSPSSR LRTFYQMYDKGLVYRSYKPVFWSPSSRTAL VYRSYKPVFWSPSSRTALAEAELEYNPEHV R S Y S R T 0 1 0 0 0 0 0 0 0 0 0 1 0 1 2 4 0 1 1 1 0 0 12 1 1439.7197 Q9NSE4 Q9NSE4 239 250 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2;3 0.0004706 61.65 By MS/MS By matching 2 1 0.68793 0.7155 31.451 3 Median 0.60975 0.63468 16.952 2 1 Median 1.1024 1.0502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14489000 8959200 5529900 13137000 8272700 4863800 1352500 686490 666030 0 0 0 0 0 0 0 0 0 0 0 0 32234 4103 33891 168619;168620;168621 169890;169891 169890 2 SYLAQFAAR LDQCPKLEVDIPLVKSYLAQFAARAIISEL DIPLVKSYLAQFAARAIISELVSISELAQP K S Y A R A 3 1 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 9 0 1025.5294 P78344;D3DQV9;H0Y3P2;E9PKF8;H0YE22 P78344 641 649 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.00071478 102.72 By MS/MS By matching 1 1 1.2214 1.1168 7.7822 2 Median 1.2241 1.1799 NaN 1 0 Median 1.2187 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11975000 5539700 6435300 9378600 4447800 4930700 2596400 1091800 1504500 0 0 0 0 0 0 0 0 0 0 0 0 32235 2639 33892 168622;168623 169892;169893 169893 2 SYLEFSEDSVQVPR FRIYGETPEACRQARSYLEFSEDSVQVPRN RSYLEFSEDSVQVPRNLVGKVIGKNGKVIQ R S Y P R N 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 0 0 1 2 0 0 14 0 1654.7839 P51116 P51116 287 300 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 4.7613E-06 94.616 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.92034 0.87207 2.8675 4 Median 0.88205 0.84608 NaN 1 0 Median 0.96029 0.85281 NaN 1 0 Median 0.83383 0.89304 NaN 1 0 Median 1.0475 0.89176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10339000 5249100 5090200 4715900 2326000 2389900 1166800 567430 599420 3953900 2086900 1867000 502630 268750 233880 0 0 0 0 0 0 32236 2426 33893 168624;168625;168626;168627 169894;169895;169896 169896 3 SYLMTNYESAPPSPQYK EVKVATQEGKEITCRSYLMTNYESAPPSPQ LMTNYESAPPSPQYKKIICMGAKENGLPLE R S Y Y K K 1 0 1 0 0 1 1 0 0 0 1 1 1 0 3 3 1 0 3 0 0 0 17 0 1974.9033 O75223;M0QZK8;B8ZZK2;H7BZK5 O75223 124 140 GGCT Gamma-glutamylcyclotransferase yes no 2 2.4842E-13 116.54 By MS/MS By matching By matching By matching By matching 2 1 1 1 1 0.66863 0.64705 32.225 6 Median 0.4906 0.45637 26.666 2 0 Median 0.87155 0.74487 NaN 1 0 Median 0.75189 0.71468 NaN 1 0 Median 1.1207 0.97532 NaN 1 0 Median 0.59216 0.58581 NaN 1 0 Median NaN NaN NaN 0 0 Median 33595000 22103000 11491000 27102000 18656000 8446700 1120300 618180 502130 1158900 661730 497190 2145700 1061800 1083900 2067100 1105600 961490 0 0 0 32237 1656 33894;33895 168628;168629;168630;168631;168632;168633 169897;169898;169899 169899 525 3 SYLMTNYESAPPSPQYKK EVKVATQEGKEITCRSYLMTNYESAPPSPQ MTNYESAPPSPQYKKIICMGAKENGLPLEY R S Y K K I 1 0 1 0 0 1 1 0 0 0 1 2 1 0 3 3 1 0 3 0 0 0 18 1 2102.9983 O75223;M0QZK8;B8ZZK2;H7BZK5 O75223 124 141 GGCT Gamma-glutamylcyclotransferase yes no 3 0.00018885 49.606 By MS/MS 1 1.1759 1.1953 NaN 1 Median 1.1759 1.1953 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11542000 4615500 6926100 11542000 4615500 6926100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32238 1656 33896 168634 169900 169900 1 SYLPPPEQPSSGSLK TQIFVEKLFDAVNTKSYLPPPEQPSSGSLK SYLPPPEQPSSGSLKVEFFPHQEKDIKKEE K S Y L K V 0 0 0 0 0 1 1 1 0 0 2 1 0 0 4 4 0 0 1 0 0 0 15 0 1585.7988 Q5T8P6 Q5T8P6 80 94 RBM26 RNA-binding protein 26 no no 2 3.1098E-05 84.821 By MS/MS 1 0.43819 0.47351 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43819 0.47351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5698800 3787700 1911100 0 0 0 0 0 0 5698800 3787700 1911100 0 0 0 0 0 0 0 0 0 32239 3097 33897 168635 169901;169902 169901 2 SYLPYPAPEGIAVSPLSLHGK SPNEAFRSPPIPYPRSYLPYPAPEGIAVSP APEGIAVSPLSLHGKGPVYPHPVLLPNGSL R S Y G K G 2 0 0 0 0 0 1 2 1 1 3 1 0 0 4 3 0 0 2 1 0 0 21 0 2195.1627 Q6W2J9;H7BYY2;A1A564 Q6W2J9 656 676 BCOR BCL-6 corepressor yes no 3 7.5083E-05 49.973 By MS/MS 1 0.75036 0.83054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75036 0.83054 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8999400 4265700 4733700 0 0 0 0 0 0 8999400 4265700 4733700 0 0 0 0 0 0 0 0 0 32240 3191 33898 168636 169903 169903 1 SYLQDPIWR CCGLSMFEVILTRIRSYLQDPIWRGPPPTN ILTRIRSYLQDPIWRGPPPTNGVMHVDECV R S Y W R G 0 1 0 1 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 9 0 1176.5928 E7EVJ5;H7C229;E7EW33;Q96F07 E7EVJ5 1075 1083 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 2 0.014496 44.447 By matching By matching By MS/MS By matching 1 1 1 1 0.73283 0.77006 20.078 4 Median 0.72361 0.72632 NaN 1 0 Median 1.1362 0.99542 NaN 1 0 Median 0.74217 0.81643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70561 0.61778 NaN 1 0 Median 6904600 3124600 3780000 1269500 720090 549410 1088300 494730 593520 4455300 1845700 2609600 0 0 0 0 0 0 91469 64092 27377 32241 897 33899 168637;168638;168639;168640 169904;169905 169905 2 SYLSGGAGAAGGGGADPGNK GGRVKKGGGKKSGKKSYLSGGAGAAGGGGA GAGAAGGGGADPGNKKWEQKQVQIKTLEGE K S Y N K K 4 0 1 1 0 0 0 8 0 0 1 1 0 0 1 2 0 0 1 0 0 0 20 0 1662.7598 P25490;H0YJV7;H0YJU4 P25490 184 203 YY1 Transcriptional repressor protein YY1 yes no 2 2.8634E-08 68.83 By MS/MS By MS/MS 1 2 0.82206 0.70503 15.042 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81934 0.81922 NaN 1 0 Median 0.76652 0.65385 10.658 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13679000 7366300 6313200 0 0 0 0 0 0 5542900 3005100 2537700 8136600 4361100 3775500 0 0 0 0 0 0 32242 2133 33900 168641;168642;168643 169906;169907;169908;169909;169910;169911 169909 6 SYLSGGAGAAGGGGADPGNKK GGRVKKGGGKKSGKKSYLSGGAGAAGGGGA AGAAGGGGADPGNKKWEQKQVQIKTLEGEF K S Y K K W 4 0 1 1 0 0 0 8 0 0 1 2 0 0 1 2 0 0 1 0 0 0 21 1 1790.8547 P25490;H0YJV7;H0YJU4 P25490 184 204 YY1 Transcriptional repressor protein YY1 yes no 3 0.00026561 29.444 By MS/MS By MS/MS 1 1 0.82027 0.84094 13.592 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72649 0.76388 NaN 1 0 Median 0.92617 0.92577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2938500 1494200 1444400 0 0 0 0 0 0 1694900 902130 792820 1243600 592060 651540 0 0 0 0 0 0 32243 2133 33901 168644;168645 169912;169913;169914;169915 169915 4 SYLTPVRDEESESQR AGTVSSTTEVRERRRSYLTPVRDEESESQR SYLTPVRDEESESQRKARSRQARQSRRSTQ R S Y Q R K 0 2 0 1 0 1 3 0 0 0 1 0 0 0 1 3 1 0 1 1 0 0 15 1 1794.8384 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 668 682 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2;3 3.9556E-10 112.72 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 4 1 0.83992 0.91721 21.322 9 Median 1.0844 1.2047 NaN 1 0 Median 0.80025 0.77151 NaN 1 0 Median 0.78713 0.95732 8.8807 2 0 Median 0.88708 0.86845 29.133 4 1 Median NaN NaN NaN 0 0 Median 1.1018 0.99599 NaN 1 0 Median 38303000 19987000 18316000 3679100 1775000 1904200 3785700 2061200 1724500 13521000 7317800 6202900 16687000 8580000 8106900 0 0 0 630290 253070 377220 32244 1508 33902 168646;168647;168648;168649;168650;168651;168652;168653;168654 169916;169917;169918;169919;169920;169921;169922;169923;169924;169925 169923 10 SYLYFTQFK DHQHFTCTIWRPQGKSYLYFTQFKAEVRGA WRPQGKSYLYFTQFKAEVRGAEIEYAMAYS K S Y F K A 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 1 0 2 0 0 0 9 0 1195.5914 Q969H8;M0QXF7;M0QYN0 Q969H8 101 109 MYDGF Myeloid-derived growth factor yes no 2 0.016818 42.287 By MS/MS By MS/MS By MS/MS 1 1 1 1.2478 1.1498 6.2747 3 Median 1.2263 1.1498 NaN 1 0 Median 1.2478 1.0694 NaN 1 0 Median 1.2644 1.2118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92716000 41213000 51504000 75439000 33444000 41994000 7395300 3257100 4138100 9882600 4511100 5371500 0 0 0 0 0 0 0 0 0 32245 3583 33903 168655;168656;168657 169926;169927;169928;169929;169930 169926 5 SYMAPER GQLIDSMANSFVGTRSYMAPERLQGTHYSV ANSFVGTRSYMAPERLQGTHYSVQSDIWSM R S Y E R L 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 7 0 852.37999 P36507;A0A1B0GUL7;G5E9C7 P36507 232 238 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 2 0.028199 50.966 By MS/MS 1 0.82883 0.71 NaN 1 Median NaN NaN NaN 0 0 Median 0.82883 0.71 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1266700 745640 521020 0 0 0 1266700 745640 521020 0 0 0 0 0 0 0 0 0 0 0 0 32246 2256 33904 168658 169931;169932 169932 2 SYMIPENEFHHKDPPPR YALAMGYSGQLKSRKSYMIPENEFHHKDPP MIPENEFHHKDPPPRNAVASVQNGPGGGPS K S Y P R N 0 1 1 1 0 0 2 0 2 1 0 1 1 1 4 1 0 0 1 0 0 0 17 1 2092.9789 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1178 1194 THOC2 THO complex subunit 2 yes no 4 0.0057501 25.319 By MS/MS By matching 1 1 0.57033 0.61366 12.037 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46996 0.56359 NaN 1 0 Median 0.69213 0.66818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6839800 4399900 2440000 0 0 0 0 0 0 5388100 3481400 1906700 1451700 918480 533270 0 0 0 0 0 0 32247 3448 33905 168659;168660 169933 169933 1 SYNDELQFLEK ______________________________ ______________________________ R S Y E K I 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1384.6511 Q9Y3I0 Q9Y3I0 4 14 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00015613 114.97 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.1145 1.0401 7.4417 5 Median 1.1106 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0634 1.0492 9.8345 2 0 Median 1.2055 1.034 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3902 1.181 NaN 1 0 Median 58891000 27164000 31727000 7341100 3335800 4005300 0 0 0 44641000 20791000 23850000 6071700 2652300 3419400 0 0 0 837110 384490 452620 32248 4430 33906 168661;168662;168663;168664;168665 169934;169935;169936;169937;169938 169937 5 SYNKDLESAEER DIHNMSVKAMRFPPKSYNKDLESAEERRER PPKSYNKDLESAEERREREQQDLEFAKEMA K S Y E R R 1 1 1 1 0 0 3 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 12 1 1439.6529 O43242 O43242 500 511 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0013726 83 By MS/MS 1 0.86348 0.86717 NaN 1 Median 0.86348 0.86717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5979500 3063600 2916000 5979500 3063600 2916000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32249 1560 33907 168666 169939;169940 169939 2 SYNQEHSQSFTFDDAQQEDR AVETGEEDVIMEALRSYNQEHSQSFTFDDA HSQSFTFDDAQQEDRKRLAELLVSVLEQGL R S Y D R K 1 1 1 3 0 4 2 0 1 0 0 0 0 2 0 3 1 0 1 0 0 0 20 0 2430.9949 Q9NPQ8;E9PI04 Q9NPQ8 24 43 RIC8A Synembryn-A yes no 3 3.4085E-22 166.57 By MS/MS By MS/MS 1 2 1.1365 1.0745 7.2484 3 Median 1.1365 1.0745 NaN 1 0 Median 1.1995 1.0433 9.9651 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24677000 10740000 13937000 19899000 8526400 11373000 4777500 2213200 2564300 0 0 0 0 0 0 0 0 0 0 0 0 32250 4057 33908 168667;168668;168669 169941;169942;169943 169941 3 SYPGSQLDILIDQGK DQSKWKAYDATHLVKSYPGSQLDILIDQGK SYPGSQLDILIDQGKDDQFLLDGQLLPDNF K S Y G K D 0 0 0 2 0 2 0 2 0 2 2 1 0 0 1 2 0 0 1 0 0 0 15 0 1632.8359 P10768;X6RA14;H7BZT7;U3KQT1 P10768 210 224 ESD S-formylglutathione hydrolase yes no 2 0.00025389 70.977 By MS/MS By matching 1 1 0.91417 0.81048 6.2608 2 Median 0.90828 0.84717 NaN 1 0 Median 0.9201 0.77538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10639000 5569900 5069400 8289300 4405700 3883600 2349900 1164200 1185700 0 0 0 0 0 0 0 0 0 0 0 0 32251 1946 33909 168670;168671 169944;169945 169944 2 SYQDPSNAQFLESIR KLWKSGFSLDNGELRSYQDPSNAQFLESIR SYQDPSNAQFLESIRRGEVPAELRRLAHGG R S Y I R R 1 1 1 1 0 2 1 0 0 1 1 0 0 1 1 3 0 0 1 0 0 0 15 0 1753.8271 Q9UNZ2;F2Z2K0 Q9UNZ2 200 214 NSFL1C NSFL1 cofactor p47 yes no 2 1.4027E-13 121.08 By MS/MS 3 0.98354 0.97075 1.8931 3 Median 0.98354 0.97075 1.8931 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47448000 25785000 21663000 47448000 25785000 21663000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32252 4353 33910 168672;168673;168674 169946;169947;169948;169949 169949 4 SYQEGLAR DRVGQNLPRCGIECKSYQEGLARLPEMKPR RCGIECKSYQEGLARLPEMKPRAGTEIRFS K S Y A R L 1 1 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 8 0 922.45084 A2A2Q9;Q9Y312 A2A2Q9 187 194 AAR2 Protein AAR2 homolog yes no 2 0.010382 58.981 By matching By MS/MS By matching 1 1 1 1.0937 1.0815 16.074 3 Median 1.1512 1.0815 NaN 1 0 Median 0.96496 0.83276 NaN 1 0 Median 1.0937 1.116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1422400 644310 778100 142410 51306 91109 979360 462760 516590 300640 130240 170400 0 0 0 0 0 0 0 0 0 32253 497 33911 168675;168676;168677 169950 169950 1 SYQFGIIGNDR QQDWSRDFCIEASERSYQFGIIGNDRVSGA ASERSYQFGIIGNDRVSGAGFSPSSKMEGG R S Y D R V 0 1 1 1 0 1 0 2 0 2 0 0 0 1 0 1 0 0 1 0 0 0 11 0 1268.6149 Q9C0C2 Q9C0C2 1121 1131 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 0.01596 55.567 By MS/MS 1 2.0255 1.9248 NaN 1 Median 2.0255 1.9248 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5544900 1822000 3722900 5544900 1822000 3722900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32254 3903 33912 168678 169951 169951 1 SYQFWDTQPVPK VGQGPAKTMEEASKRSYQFWDTQPVPKLGE SKRSYQFWDTQPVPKLGEVVNTHGPVEPDK R S Y P K L 0 0 0 1 0 2 0 0 0 0 0 1 0 1 2 1 1 1 1 1 0 0 12 0 1494.7143 P30419;K7EN82;B7Z8J4 P30419 116 127 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes no 2 0.00058963 73.067 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.83802 0.7982 13.463 6 Median 0.76121 0.71584 19.075 2 0 Median NaN NaN NaN 0 0 Median 0.80218 0.77773 NaN 1 0 Median 0.883 0.78991 19.194 2 1 Median NaN NaN NaN 0 0 Median 0.96251 0.82858 NaN 1 0 Median 40973000 21707000 19266000 18440000 9219500 9220600 0 0 0 17555000 9669000 7885600 4861700 2767100 2094600 0 0 0 116410 51570 64841 32255 2193 33913 168679;168680;168681;168682;168683;168684 169952;169953;169954;169955;169956 169952 5 SYQLEGVNWLAQR EQDLRQWGLTGIHLRSYQLEGVNWLAQRFH LRSYQLEGVNWLAQRFHCQNGCILGDEMGL R S Y Q R F 1 1 1 0 0 2 1 1 0 0 2 0 0 0 0 1 0 1 1 1 0 0 13 0 1562.7841 Q86WJ1;A0A494C1F7;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C111;A0A494C1H0;A0A494C0M4;A0A494C1I3;A0A494C0B8;A0A494C0Q0;A0A494C1S1;A0A087WWW4 Q86WJ1 48 60 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 8.7239E-05 150.08 By MS/MS 1 0.82338 0.87493 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82338 0.87493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8802000 4479000 4322900 0 0 0 0 0 0 8802000 4479000 4322900 0 0 0 0 0 0 0 0 0 32256 3293 33914 168685 169957;169958 169958 2 SYQLRPGTMIEWGNYWAR NEPVPRSGPNIYELRSYQLRPGTMIEWGNY LRPGTMIEWGNYWARAIRFRQDGNEAVGGF R S Y A R A 1 2 1 0 0 1 1 2 0 1 1 0 1 0 1 1 1 2 2 0 0 0 18 1 2227.0633 O75323;C9K068 O75323 191 208 GBAS Protein NipSnap homolog 2 yes no 3 3.0357E-06 55.589 By MS/MS By matching 1 1 1.0526 1.0029 23.723 2 Median 0.7933 0.84799 NaN 1 0 Median 1.3965 1.186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12299000 6578700 5720200 11604000 6301600 5302600 694750 277090 417660 0 0 0 0 0 0 0 0 0 0 0 0 32257 1658 33915 168686;168687 169959;169960 169959 2 SYQSFQTFR NLIQSTLALSDSQMKSYQSFQTFRLYREYK SDSQMKSYQSFQTFRLYREYKDHVLVKAFM K S Y F R L 0 1 0 0 0 2 0 0 0 0 0 0 0 2 0 2 1 0 1 0 0 0 9 0 1162.5407 Q12789;I3L1Z3 Q12789 1446 1454 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2 0.00021251 141.52 By matching By MS/MS By matching By matching 1 1 1 1 0.98067 0.90971 11.991 4 Median NaN NaN NaN 0 0 Median 0.99768 0.83616 NaN 1 0 Median 0.96395 1.0507 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79219 0.82827 NaN 1 0 Median 1.1896 0.98974 NaN 1 0 Median 24816000 12595000 12221000 0 0 0 1717400 895260 822180 20991000 10616000 10375000 0 0 0 1626600 851030 775570 481250 232830 248420 32258 2758 33916 168688;168689;168690;168691 169961;169962 169962 2 SYRDQTIVDPFSSK ______________________________ RSYRDQTIVDPFSSKHNVIVGRNGSGKSNF R S Y S K H 0 1 0 2 0 1 0 0 0 1 0 1 0 1 1 3 1 0 1 1 0 0 14 1 1641.7999 Q9UQE7 Q9UQE7 13 26 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 2.3585E-07 103.91 By matching By MS/MS By MS/MS 1 1 1 1.1146 1.2718 75.043 3 Median 0.41449 0.43449 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6241 1.8429 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1146 1.2718 NaN 1 0 Median NaN NaN NaN 0 0 Median 79464000 32589000 46874000 3268300 2103000 1165400 0 0 0 40476000 14092000 26384000 0 0 0 35719000 16394000 19325000 0 0 0 32259 4362 33917 168692;168693;168694 169963;169964;169965 169965 3 SYSAVDVLQTLEHVDLDPQEPPR QLGAILKSCNMQAWKSYSAVDVLQTLEHVD QTLEHVDLDPQEPPR_______________ K S Y P R - 1 1 0 3 0 2 2 0 1 0 3 0 0 0 3 2 1 0 1 3 0 0 23 0 2607.2817 Q8IVS2 Q8IVS2 368 390 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 3 0.026906 13.057 By matching By MS/MS By matching 1 1 1 0.64513 0.70062 35.748 3 Median NaN NaN NaN 0 0 Median 0.42776 0.38983 NaN 1 0 Median 0.64513 0.70062 NaN 1 0 Median 0.84708 0.74491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3107200 1860500 1246700 0 0 0 365390 285450 79945 2686400 1548000 1138400 55364 26988 28376 0 0 0 0 0 0 32260 3319 33918 168695;168696;168697 169966;169967 169967 2 SYSDPPLK HRYIEVFKSSQEEVRSYSDPPLKFMSVQRP SSQEEVRSYSDPPLKFMSVQRPGPYDRPGT R S Y L K F 0 0 0 1 0 0 0 0 0 0 1 1 0 0 2 2 0 0 1 0 0 0 8 0 905.44945 P52597 P52597 193 200 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 0.053471 34.003 By matching By matching By matching By matching By MS/MS 1 1 1 2 1 0.96918 0.89278 12.884 6 Median NaN NaN NaN 0 0 Median 1.0153 0.86967 NaN 1 0 Median 0.77002 0.7535 NaN 1 0 Median 1.0686 0.95675 NaN 1 0 Median 0.83805 0.81485 16.627 2 0 Median 1.1861 0.99289 NaN 1 0 Median 28314000 14665000 13650000 0 0 0 2529900 1216300 1313600 6630800 3491400 3139400 4521000 2001000 2520000 13352000 7341900 6010500 1280000 613860 666090 32261 2452 33919 168698;168699;168700;168701;168702;168703 169968 169968 1 SYSEHDDERVNFPQR ______________________________ SYSEHDDERVNFPQRKKKGRGPFRWKYGEG K S Y Q R K 0 2 1 2 0 1 2 0 1 0 0 0 0 1 1 2 0 0 1 1 0 0 15 1 1877.8293 Q9UBU9;E9PQA4 Q9UBU9 7 21 NXF1 Nuclear RNA export factor 1 yes no 3 0.029056 18.829 By matching By MS/MS 1 1 1.0575 1.0783 8.5464 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0265 1.1455 NaN 1 0 Median 1.0894 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3176000 1583300 1592700 0 0 0 0 0 0 2483700 1278800 1204900 692270 304460 387810 0 0 0 0 0 0 32262 4249 33920 168704;168705 169969 169969 1 SYSFDEIRK QDLLHTVFKNGKVTKSYSFDEIRKNAQLNI NGKVTKSYSFDEIRKNAQLNIELEAAHH__ K S Y R K N 0 1 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 1 0 0 0 9 1 1143.556 P43490 P43490 470 478 NAMPT Nicotinamide phosphoribosyltransferase yes yes 2 0.0036881 70.919 By MS/MS By matching 1 1 0.93219 0.88945 29.522 2 Median 1.0994 1.0959 NaN 1 0 Median 0.79044 0.72187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14739000 7142400 7596800 10929000 5060900 5867900 3810300 2081400 1728900 0 0 0 0 0 0 0 0 0 0 0 0 32263 2326 33921 168706;168707 169970;169971 169970 2 SYSLLFR VSSNEFEPSNSHMVKSYSLLFRVTRPGRRE PSNSHMVKSYSLLFRVTRPGRREFNGMING K S Y F R V 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 0 7 0 884.4756 J3QQW9;Q15022 J3QQW9 224 230 SUZ12 Polycomb protein SUZ12 yes no 2 0.040491 57.463 By MS/MS 1 1.0526 1.1256 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0526 1.1256 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2292400 1141100 1151300 0 0 0 0 0 0 2292400 1141100 1151300 0 0 0 0 0 0 0 0 0 32264 1344 33922 168708 169972 169972 1 SYSMIVNNLLKPISVEGSSK TERSFDLLVKNLNGKSYSMIVNNLLKPISV VNNLLKPISVEGSSKKVKTDTVLILCRKKV K S Y S K K 0 0 2 0 0 0 1 1 0 2 2 2 1 0 1 5 0 0 1 2 0 0 20 1 2165.1402 Q9HB71 Q9HB71 124 143 CACYBP Calcyclin-binding protein yes yes 2;3 2.6407E-19 116.65 By MS/MS By MS/MS By matching By matching By matching By MS/MS 5 1 1 2 1 6 1.058 0.97141 33.94 15 Median 0.96117 0.93841 10.942 5 1 Median 1.1466 1.0465 NaN 1 0 Median 1.0355 1.0585 NaN 1 0 Median 1.0797 0.96973 4.9758 2 0 Median 2.5565 2.6667 NaN 1 0 Median 1.0881 0.94431 40.037 5 0 Median 95116000 45644000 49472000 51197000 25076000 26121000 10172000 4701400 5470400 630840 356630 274210 442080 207570 234510 616390 170920 445470 32058000 15131000 16927000 32265 4016 33923;33924 168709;168710;168711;168712;168713;168714;168715;168716;168717;168718;168719;168720;168721;168722;168723;168724 169973;169974;169975;169976;169977;169978;169979;169980;169981;169982;169983;169984;169985 169985 1863 13 SYSPYDMLESIR ERSVPHLQKVFDRYKSYSPYDMLESIRKEV RYKSYSPYDMLESIRKEVKGDLENAFLNLV K S Y I R K 0 1 0 1 0 0 1 0 0 1 1 0 1 0 1 3 0 0 2 0 0 0 12 0 1459.6653 P07355;H0YN42;A6NMY6;H0YM50;H0YN28;H0YL33 P07355 234 245 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 3.191E-06 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 4 3 3 1 3 0.97191 1.3262 27.08 19 Linear 0.9887 0.90948 44.723 5 0 Plateau 1.0351 0.8667 6.0736 4 0 Median 1.0397 1.0079 19.653 3 0 Plateau 1.1007 0.92391 39.215 3 0 Plateau 0.78135 0.84053 NaN 1 0 Median 0.94521 0.88269 6.9113 3 0 Plateau 295750000 145280000 150470000 86437000 42519000 43918000 110790000 54314000 56480000 79292000 39292000 39999000 14212000 6609100 7602600 2331700 1253300 1078400 2688100 1295100 1393100 32266 1885 33925;33926 168725;168726;168727;168728;168729;168730;168731;168732;168733;168734;168735;168736;168737;168738;168739;168740;168741;168742;168743 169986;169987;169988;169989;169990;169991;169992;169993;169994;169995;169996;169997;169998;169999;170000;170001;170002;170003;170004;170005;170006;170007;170008;170009;170010;170011;170012;170013;170014 170002 653 29 SYSPYDMLESIRK ERSVPHLQKVFDRYKSYSPYDMLESIRKEV YKSYSPYDMLESIRKEVKGDLENAFLNLVQ K S Y R K E 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 3 0 0 2 0 0 0 13 1 1587.7603 P07355;H0YN42;A6NMY6;H0YM50;H0YN28;H0YL33 P07355 234 246 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3 2.8926E-06 121.9 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 11 5 6 10 4 3 1.0577 1.0189 17.331 38 Median 1.0117 1.0445 14.046 11 3 Plateau 1.1514 1.0196 28.224 5 0 Median 1.0452 1.133 10.182 5 1 Median 1.1057 0.98632 14.993 10 1 Median 0.99544 1.0792 28.645 4 0 Median 1.0998 1.0085 8.4578 3 0 Median 453430000 213480000 239950000 256900000 122710000 134190000 35056000 15980000 19076000 71315000 33547000 37768000 74984000 33748000 41236000 14075000 6965400 7109400 1101200 530140 571040 32267 1885 33927;33928 168744;168745;168746;168747;168748;168749;168750;168751;168752;168753;168754;168755;168756;168757;168758;168759;168760;168761;168762;168763;168764;168765;168766;168767;168768;168769;168770;168771;168772;168773;168774;168775;168776;168777;168778;168779;168780;168781;168782 170015;170016;170017;170018;170019;170020;170021;170022;170023;170024;170025;170026;170027;170028;170029;170030;170031;170032;170033;170034;170035;170036;170037;170038;170039;170040;170041;170042;170043;170044;170045;170046;170047;170048;170049;170050;170051;170052;170053;170054;170055;170056;170057;170058;170059;170060;170061 170042 653 47 SYSSGGEDGYVR HFGPINSVAFHPDGKSYSSGGEDGYVRIHY DGKSYSSGGEDGYVRIHYFDPQYFEFEFEA K S Y V R I 0 1 0 1 0 0 1 3 0 0 0 0 0 0 0 3 0 0 2 1 0 0 12 0 1275.5368 Q13347 Q13347 299 310 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2 0.00017422 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0582 0.98196 18.543 7 Median 1.1765 1.1378 19.811 2 0 Median 0.96422 0.82539 13.436 3 1 Median 1.1337 1.0916 NaN 1 0 Median 1.0356 0.86431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32676000 15123000 17553000 12355000 5832100 6522900 16897000 7808100 9089400 1620200 691480 928770 1803600 791760 1011900 0 0 0 0 0 0 32268 2806 33929 168783;168784;168785;168786;168787;168788;168789 170062;170063;170064;170065;170066;170067;170068;170069;170070;170071;170072;170073 170071 12 SYSTTYEER ARNIFPSNLVSAAFRSYSTTYEERNITGTR VSAAFRSYSTTYEERNITGTRVKVPVGQEV R S Y E R N 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 2 2 0 2 0 0 0 9 0 1134.4829 Q15758;M0QXM4;M0QX44 Q15758 203 211 SLC1A5 Neutral amino acid transporter B(0);Amino acid transporter yes no 2 0.0029859 68.224 By MS/MS 2 0.99089 0.86516 3.0233 2 Median NaN NaN NaN 0 0 Median 0.99089 0.86516 3.0233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2375900 1338200 1037700 0 0 0 2375900 1338200 1037700 0 0 0 0 0 0 0 0 0 0 0 0 32269 2968 33930 168790;168791 170074;170075 170074 2 SYSVGASGSSSR LISSLKDCLHGIEAKSYSVGASGSSSRKRH EAKSYSVGASGSSSRKRHRSRERSPSRSRE K S Y S R K 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 6 0 0 1 1 0 0 12 0 1143.5156 Q8N684;F5H669 Q8N684 407 418 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 0.0013187 54.416 By MS/MS By MS/MS By MS/MS 1 1 1 1.1732 1.0108 9.191 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9023 0.95212 NaN 1 0 Median 1.3158 1.1404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1732 1.0108 NaN 1 0 Median 2606600 1240500 1366200 0 0 0 0 0 0 1252100 622480 629610 710670 311760 398900 0 0 0 643890 306250 337640 32270 3385 33931 168792;168793;168794 170076;170077;170078 170077 3 SYSVSQFQK KRAIETKEEMGDYIRSYSVSQFQKTYSLPE MGDYIRSYSVSQFQKTYSLPEDDDFIKRKE R S Y Q K T 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 3 0 0 1 1 0 0 9 0 1072.5189 Q567U6;F8W9X7 Q567U6 140 148 CCDC93 Coiled-coil domain-containing protein 93 yes no 2 0.015183 43.808 By MS/MS By matching By matching 1 1 1 0.78593 0.81684 43.529 3 Median 0.78593 0.78357 NaN 1 0 Median 1.8879 1.6989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77282 0.81684 NaN 1 0 Median NaN NaN NaN 0 0 Median 3000500 1421900 1578600 1566000 824690 741290 516520 164210 352300 0 0 0 0 0 0 918020 432960 485060 0 0 0 32271 1089 33932 168795;168796;168797 170079 170079 1 SYTGLAPGYTYQFPEFR MLGYPGFQATTYASRSYTGLAPGYTYQFPE TGLAPGYTYQFPEFRVERTPLPSAPVLPEL R S Y F R V 1 1 0 0 0 1 1 2 0 0 1 0 0 2 2 1 2 0 3 0 0 0 17 0 1995.9367 O43347 O43347 231 247 MSI1 RNA-binding protein Musashi homolog 1 yes yes 2 0.0039626 45.915 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.73935 0.76773 24.576 4 Median 0.77511 0.77125 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70524 0.76423 NaN 1 0 Median 1.3813 1.1714 NaN 1 0 Median 0.62413 0.66275 NaN 1 1 Median NaN NaN NaN 0 0 Median 10031000 5520400 4510700 3802700 1952400 1850300 0 0 0 4822100 2716800 2105300 150320 67041 83277 1256000 784180 471780 0 0 0 32272 1567 33933 168798;168799;168800;168801 170080;170081;170082;170083 170081 4 SYTPGVGGDPAQLAQR ______________________________ YTPGVGGDPAQLAQRISSNIQKITQCSVEI M S Y Q R I 2 1 0 1 0 2 0 3 0 0 1 0 0 0 2 1 1 0 1 1 0 0 16 0 1615.7954 O15400 O15400 2 17 STX7 Syntaxin-7 yes yes 2 2.2124E-08 100.55 By MS/MS 2 0.89142 0.83332 1.7457 2 Median 0.89142 0.83332 1.7457 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65974000 34502000 31471000 65974000 34502000 31471000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32273 1546 33934 168802;168803 170084;170085 170085 2 SYTSGPGSR SYKVSTSGPRAFSSRSYTSGPGSRISSSSF RAFSSRSYTSGPGSRISSSSFSRVGSSNFR R S Y S R I 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 3 1 0 1 0 0 0 9 0 910.41446 P05787;CON__P05787;F8VUG2;F8W1U3;F8VQY3 P05787 24 32 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0038329 62.546 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 3 1 4 6 1.0472 0.9659 20.906 16 Median 0.9509 0.92667 NaN 1 0 Median 1.237 1.0791 NaN 1 0 Median 1.0401 1.0975 20.324 3 0 Median 1.1728 0.84698 NaN 1 0 Median 1.1036 1.0877 9.735 4 0 Median 0.98315 0.79932 9.4529 6 0 Median 9073400 4319900 4753500 295060 139520 155540 811890 351100 460790 2426700 1167600 1259000 173570 77294 96278 3428300 1618500 1809800 1937900 965780 972080 + 32274 750 33935 168804;168805;168806;168807;168808;168809;168810;168811;168812;168813;168814;168815;168816;168817;168818;168819 170086;170087;170088;170089;170090;170091;170092;170093;170094;170095;170096;170097;170098;170099;170100;170101 170087 16 SYTVGVMMMHR FHHKMVDNRGFMVTRSYTVGVMMMHRTGLY MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ R S Y H R T 0 1 0 0 0 0 0 1 1 0 0 0 3 0 0 1 1 0 1 2 0 0 11 0 1310.5934 P50454;E9PPV6;E9PR70;E9PKH2;E9PK86;E9PMI5 P50454 229 239 SERPINH1 Serpin H1 yes no 2;3 4.1816E-15 189.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 4 3 2 3 1.2926 1.1923 17.478 21 Median 1.1023 1.0473 11.703 6 1 Median 1.3385 1.1605 5.2957 3 0 Median 1.1743 1.2024 9.3548 4 0 Median 1.4012 1.206 9.2033 3 0 Median 1.5838 1.5907 17.918 2 0 Median 1.7059 1.4603 10.35 3 0 Median 241780000 104210000 137570000 96583000 45168000 51416000 8358900 3546400 4812500 64672000 27689000 36983000 52998000 21032000 31966000 12604000 4356900 8247300 6562600 2416800 4145900 32275 2414 33936;33937 168820;168821;168822;168823;168824;168825;168826;168827;168828;168829;168830;168831;168832;168833;168834;168835;168836;168837;168838;168839;168840 170102;170103;170104;170105;170106;170107;170108;170109;170110;170111;170112;170113;170114;170115;170116;170117;170118;170119;170120;170121;170122 170103 1125;1126;1127 21 SYVAWDR NKNLLTVTSSDEMMKSYVAWDREKRLSFAV TSSDEMMKSYVAWDREKRLSFAVPFREMKP K S Y D R E 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 7 0 895.41882 P78527 P78527 882 888 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0054124 97.068 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 2 1.1893 1.0988 22.92 11 Median 0.91656 0.91142 24.358 2 0 Median 1.5687 1.3148 6.5352 2 0 Median 0.9585 1.0316 8.9214 2 0 Median 1.7253 1.5119 27.335 2 0 Median 0.90915 0.95507 NaN 1 0 Median 1.3151 1.0894 15.415 2 0 Median 73210000 34386000 38825000 10011000 4782500 5228200 16445000 6786900 9657600 35100000 18008000 17092000 6511200 2571200 3940000 3199700 1350200 1849600 1943700 886330 1057300 32276 2647 33938 168841;168842;168843;168844;168845;168846;168847;168848;168849;168850;168851 170123;170124;170125;170126;170127 170124 5 SYVAWDREK NKNLLTVTSSDEMMKSYVAWDREKRLSFAV SDEMMKSYVAWDREKRLSFAVPFREMKPVI K S Y E K R 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 1 0 1 1 1 0 0 9 1 1152.5564 P78527 P78527 882 890 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.004114 93.374 By MS/MS By MS/MS By matching 1 1 1 0.81941 0.94992 12.31 3 Median 1.0372 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81941 0.94992 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73427 0.83385 NaN 1 0 Median NaN NaN NaN 0 0 Median 16409000 8213100 8196000 4143700 1999400 2144400 0 0 0 10131000 5024700 5106400 0 0 0 2134300 1189000 945280 0 0 0 32277 2647 33939 168852;168853;168854 170128;170129;170130 170129 3 SYVDLYVK KVMFNGKKLPVNGFRSYVDLYVKDKLDETG LPVNGFRSYVDLYVKDKLDETGVALKVIHE R S Y V K D 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 2 2 0 0 8 0 985.51205 Q02880;E9PCY5 Q02880 290 297 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.023122 44.395 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.82506 0.77228 30.577 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55725 0.64484 NaN 1 0 Median 1.3936 1.2685 NaN 1 0 Median 0.82707 0.86678 NaN 1 0 Median 0.82305 0.68808 NaN 1 0 Median 16983000 8801100 8181500 0 0 0 0 0 0 10331000 5635100 4696000 949530 424730 524800 5342700 2590200 2752400 359260 151030 208230 32278 2704 33940 168855;168856;168857;168858 170131;170132;170133 170131 3 SYVDMYLK KVFLNGNKLPVKGFRSYVDMYLKDKLDETG LPVKGFRSYVDMYLKDKLDETGNSLKVIHE R S Y L K D 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 2 1 0 0 8 0 1017.4841 P11388 P11388 269 276 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.015483 50.127 By matching By MS/MS By matching By MS/MS 2 2 1 1 1.3312 1.3107 17.775 6 Median NaN NaN NaN 0 0 Median 1.4576 1.3017 4.0892 2 0 Median 1.0407 1.1388 24.13 2 0 Median 1.834 1.6707 NaN 1 0 Median 1.2244 1.2822 NaN 1 0 Median NaN NaN NaN 0 0 Median 29292000 13133000 16159000 0 0 0 1400300 561960 838300 11014000 5207200 5806500 1084600 339770 744830 15794000 7024400 8769300 0 0 0 32279 1963 33941 168859;168860;168861;168862;168863;168864 170134;170135;170136;170137 170134 4 SYVDMYLKDKLDETGNSLK KVFLNGNKLPVKGFRSYVDMYLKDKLDETG MYLKDKLDETGNSLKVIHEQVNHRWEVCLT R S Y L K V 0 0 1 3 0 0 1 1 0 0 3 3 1 0 0 2 1 0 2 1 0 0 19 2 2218.0827 P11388 P11388 269 287 TOP2A DNA topoisomerase 2-alpha yes yes 3 6.2516E-07 57.338 By MS/MS By matching 1 1 1.188 1.3835 19.947 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0371 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3609 1.5931 NaN 1 0 Median NaN NaN NaN 0 0 Median 10177000 4721800 5455000 0 0 0 0 0 0 7358000 3421700 3936300 0 0 0 2818900 1300200 1518800 0 0 0 32280 1963 33942 168865;168866 170138 170138 1 SYVDPSTDER NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ PSEVRSYVDPSTDERLSYTQLLRRCRRDDG R S Y E R L 0 1 0 2 0 0 1 0 0 0 0 0 0 0 1 2 1 0 1 1 0 0 10 0 1167.5044 Q15149;H0YDN1 Q15149 3982 3991 PLEC Plectin yes no 2 0.0014711 65.224 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.1186 1.0986 13.649 5 Median 1.0098 1.0101 NaN 1 0 Median 1.2934 1.0986 NaN 1 0 Median 1.1186 1.2562 NaN 1 0 Median 1.3441 1.1668 NaN 1 0 Median 0.84381 0.88193 NaN 1 0 Median NaN NaN NaN 0 0 Median 7263300 3522400 3740900 1082700 549000 533730 3595100 1765500 1829600 906900 410500 496400 423770 159870 263900 1254800 637540 617280 0 0 0 32281 2933 33943 168867;168868;168869;168870;168871 170139;170140;170141;170142;170143;170144 170142 6 SYVDPSTDERLSYTQLLR NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ DPSTDERLSYTQLLRRCRRDDGTGQLLLPL R S Y L R R 0 2 0 2 0 1 1 0 0 0 3 0 0 0 1 3 2 0 2 1 0 0 18 1 2142.0593 Q15149;H0YDN1 Q15149 3982 3999 PLEC Plectin yes no 3 0.0021414 42.647 By MS/MS 1 1.1063 1.2022 NaN 1 Median 1.1063 1.2022 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6407400 2908900 3498500 6407400 2908900 3498500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32282 2933 33944 168872 170145 170145 1 SYVSEKDVTSAK PELNEKEEAYNSLMKSYVSEKDVTSAKALY LMKSYVSEKDVTSAKALYEHLTAKNTKLDD K S Y A K A 1 0 0 1 0 0 1 0 0 0 0 2 0 0 0 3 1 0 1 2 0 0 12 1 1312.6511 P42704 P42704 1327 1338 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 3.3925E-05 108.7 By MS/MS By MS/MS 3 1 0.99594 1.0474 21.868 3 Median 1.0221 1.0766 3.8968 2 2 Median 0.79522 0.7394 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15089000 7530900 7557900 8835600 4160300 4675300 6253200 3370600 2882600 0 0 0 0 0 0 0 0 0 0 0 0 32283 2315 33945 168873;168874;168875;168876 170146;170147;170148;170149 170149 4 SYVTMTATK FDQNVKLWGVIDVKRSYVTMTATKIEITMR VIDVKRSYVTMTATKIEITMRKAEPMQWAS R S Y T K I 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 3 0 1 1 0 0 9 0 1000.4899 Q9UHD1;E9PHZ2 Q9UHD1 291 299 CHORDC1 Cysteine and histidine-rich domain-containing protein 1 yes no 2 0.0011093 85.161 By MS/MS By MS/MS 1 1 1.0304 0.91912 23.437 2 Median 1.1621 1.0848 NaN 1 0 Median 0.91364 0.77875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14791000 6942400 7848500 4915900 1958900 2957000 9875100 4983600 4891500 0 0 0 0 0 0 0 0 0 0 0 0 32284 4275 33946 168877;168878 170150;170151;170152;170153 170150 4 SYVTTSTR MFGGPGTASRPSSSRSYVTTSTRTYSLGSA SRPSSSRSYVTTSTRTYSLGSALRPSTSRS R S Y T R T 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 1 1 0 0 8 0 913.45051 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 29 36 VIM Vimentin yes no 2 0.004481 81.32 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1 5 1.1798 1.0778 33.446 12 Median 1.0705 1.0679 NaN 1 0 Median 1.3807 1.1387 6.4516 2 0 Median 1.4682 1.4861 23.592 2 0 Median 1.1345 0.9848 NaN 1 0 Median 2.8108 2.8022 NaN 1 0 Median 1.1504 0.9672 11.093 5 0 Median 45435000 18547000 26888000 3289600 1544600 1745000 13675000 5743300 7931300 2177700 963500 1214200 626810 293750 333060 12668000 4317900 8349600 12999000 5684300 7314500 32285 1907 33947 168879;168880;168881;168882;168883;168884;168885;168886;168887;168888;168889;168890 170154;170155;170156;170157;170158;170159;170160;170161;170162;170163 170161 10 SYWLDNFAK IPYAGIDLAVYELLKSYWLDNFAKDSVNPG VYELLKSYWLDNFAKDSVNPGVMVLLGCGA K S Y A K D 1 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 9 0 1142.5397 Q6NUK1 Q6NUK1 370 378 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.010073 48.561 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.5058 1.2804 21.965 5 Median 0.97093 0.92979 11.097 2 0 Median 1.5068 1.2804 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5058 1.3318 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6989 1.4638 NaN 1 0 Median 16432000 7320700 9111400 9624700 4594100 5030500 6529900 2623400 3906500 0 0 0 177570 75901 101670 0 0 0 99905 27211 72694 32286 3143 33948 168891;168892;168893;168894;168895 170164;170165;170166 170164 3 SYYFPVK SEHPPLCGRDHLSFRSYYFPVKNVIDGDLC GRDHLSFRSYYFPVKNVIDGDLCEQFNSME R S Y V K N 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 2 1 0 0 7 0 902.4538 Q15393 Q15393 1165 1171 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.027697 51.572 By matching By matching By MS/MS By matching 1 1 2 2 1.0928 0.99206 15.859 6 Median 1.4142 1.3282 NaN 1 0 Median 1.0907 0.95444 NaN 1 0 Median 0.8602 0.93783 13.415 2 0 Median 1.1427 1.014 13.963 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34595000 17414000 17180000 1520900 638280 882670 6213400 3014400 3199000 25238000 13053000 12186000 1621800 708910 912870 0 0 0 0 0 0 32287 2946 33949 168896;168897;168898;168899;168900;168901 170167 170167 1 SYYKPDSPEYK NLLTADFQLLFNNAKSYYKPDSPEYKAACK NNAKSYYKPDSPEYKAACKLWDLYLRTRNE K S Y Y K A 0 0 0 1 0 0 1 0 0 0 0 2 0 0 2 2 0 0 3 0 0 0 11 1 1375.6296 Q86U86;E7EVG2;H0Y5B5;C9JPI5;C9JQF1 Q86U86 125 135 PBRM1 Protein polybromo-1 yes no 3 0.00045037 59.198 By MS/MS By MS/MS By matching 1 1 1 0.89495 0.83875 11.628 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71128 0.82235 NaN 1 0 Median 0.89495 0.83875 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.115 1.0151 NaN 1 0 Median 10184000 5692000 4492100 0 0 0 0 0 0 8008600 4569000 3439700 1898400 999360 899060 0 0 0 277060 123690 153360 32288 3273 33950 168902;168903;168904 170168;170169;170170;170171 170169 4 SYYQSSVQYLYR TLVTWLQCVKGANAKSYYQSSVQYLYRELL NAKSYYQSSVQYLYRELLVHLDDPERAIQD K S Y Y R E 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 3 0 0 4 1 0 0 12 0 1555.7307 Q86Y56;H0Y650;E9PGY2 Q86Y56 781 792 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 7.224E-08 127.3 By MS/MS 1 1.1434 1.0821 NaN 1 Median 1.1434 1.0821 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8086200 3444200 4642000 8086200 3444200 4642000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32289 3305 33951 168905 170172 170172 1 TAAALAPASLTSAR RSAHATAPVNIAGSRTAAALAPASLTSARM RTAAALAPASLTSARMAPALSGANLTSPRV R T A A R M 6 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 2 0 0 0 0 0 14 0 1299.7147 Q9UQ35 Q9UQ35 2357 2370 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 4.287E-08 152.07 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 3 1 0.89522 0.80618 85.591 8 Median 0.76864 0.74795 3.3078 2 0 Median 0.63694 0.55458 NaN 1 0 Median 0.68427 0.73679 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6146 1.6257 101.93 3 1 Median 1.0199 0.84886 NaN 1 0 Median 152630000 43463000 109170000 26822000 14810000 12012000 622970 341530 281440 4869500 2667500 2202000 0 0 0 118180000 24565000 93618000 2132500 1078600 1053900 32290 4359 33952 168906;168907;168908;168909;168910;168911;168912;168913 170173;170174;170175;170176;170177;170178;170179;170180;170181;170182;170183 170176 11 TAAANAAAGAAENAFR QQEFAAGVFSNPAVRTAAANAAAGAAENAF AAANAAAGAAENAFRAP_____________ R T A F R A 9 1 2 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 16 0 1475.7117 O14828 O14828 330 345 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 2;3 7.4472E-47 223.22 By MS/MS By MS/MS By matching 9 11 1 1.2054 1.0486 23.974 20 Median 1.0813 1.045 19.615 9 0 Median 1.3022 1.1111 20.752 10 0 Median 0.6109 0.59625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 194290000 88606000 105690000 136040000 62946000 73091000 56126000 24565000 31561000 2130100 1094900 1035200 0 0 0 0 0 0 0 0 0 32291 1498 33953 168914;168915;168916;168917;168918;168919;168920;168921;168922;168923;168924;168925;168926;168927;168928;168929;168930;168931;168932;168933;168934 170184;170185;170186;170187;170188;170189;170190;170191;170192;170193;170194;170195;170196;170197;170198;170199;170200 170185 17 TAAANAAAGAAENAFRAP QQEFAAGVFSNPAVRTAAANAAAGAAENAF ANAAAGAAENAFRAP_______________ R T A A P - 10 1 2 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 18 1 1643.8016 O14828 O14828 330 347 SCAMP3 Secretory carrier-associated membrane protein 3 yes yes 3 0.032349 32.926 By MS/MS By matching 1 1 0.84373 0.86723 15.37 2 Median 0.7897 0.77792 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90146 0.9668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10139000 4692900 5445700 8608900 4034200 4574700 0 0 0 1529800 658770 871030 0 0 0 0 0 0 0 0 0 32292 1498 33954 168935;168936 170201 170201 0 TAADELEAFLGGGAPGGR ERRRRQQRPPRSRERTAADELEAFLGGGAP DELEAFLGGGAPGGRHPGGGDYEEL_____ R T A G R H 4 1 0 1 0 0 2 5 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 0 1687.8166 Q3YEC7 Q3YEC7 702 719 RABL6 Rab-like protein 6 yes yes 2 5.177E-06 66.262 By MS/MS By matching 1 1 1.1496 1.0715 20.441 2 Median 0.95123 0.92732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3893 1.2382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3094300 1499800 1594500 3012300 1458800 1553500 0 0 0 0 0 0 81986 40983 41002 0 0 0 0 0 0 32293 3014 33955 168937;168938 170202;170203 170202 2 TAAEDAIR CDIIKNYGFVHIEDKTAAEDAIRNLHHYKL FVHIEDKTAAEDAIRNLHHYKLHGVNINVE K T A I R N 3 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 845.4243 Q9BQ04;E9PLB0;E9PM61;D6R9K7;U3KQD5;J3QRR5;Q9BWF3;E9PB51 Q9BWF3 46 53 RBM4B;RBM4 RNA-binding protein 4B;RNA-binding protein 4 no no 2 0.020415 46.426 By MS/MS By MS/MS By MS/MS 1 1 1 0.97353 1.0014 17.752 3 Median NaN NaN NaN 0 0 Median 0.97353 0.8302 NaN 1 1 Median 0.95507 1.0014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1232 1.1838 NaN 1 0 Median NaN NaN NaN 0 0 Median 3462700 1654500 1808200 0 0 0 1520300 815970 704330 980260 490530 489740 0 0 0 962090 347980 614110 0 0 0 32294 3870;3780 33956 168939;168940;168941 170204;170205;170206;170207 170204 4 TAAELLQSQGSQAGGSQTLK KKSLDDEVNAFKQRKTAAELLQSQGSQAGG LQSQGSQAGGSQTLKRDKEKKNLGFL____ K T A L K R 3 0 0 0 0 4 1 3 0 0 3 1 0 0 0 3 2 0 0 0 0 0 20 0 1974.0018 B1AMS2;Q14141 B1AMS2 401 420 SEPT6 Septin-6 yes no 2;3 2.4303E-48 214.23 By MS/MS By MS/MS 2 2 1.1233 1.0277 17.554 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94306 0.93037 0.8449 2 0 Median 1.4334 1.2294 12.128 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32027000 15195000 16833000 0 0 0 0 0 0 18781000 9766700 9014400 13246000 5427900 7818400 0 0 0 0 0 0 32295 573 33957 168942;168943;168944;168945 170208;170209;170210;170211;170212 170209 5 TAAELLQSQGSQAGGSQTLKR KKSLDDEVNAFKQRKTAAELLQSQGSQAGG QSQGSQAGGSQTLKRDKEKKNLGFL_____ K T A K R D 3 1 0 0 0 4 1 3 0 0 3 1 0 0 0 3 2 0 0 0 0 0 21 1 2130.1029 B1AMS2;Q14141 B1AMS2 401 421 SEPT6 Septin-6 yes no 3 7.9031E-47 199.15 By MS/MS By MS/MS By MS/MS 1 2 2 0.99447 1.106 30.231 5 Median 0.70244 0.70521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99232 1.0568 6.4273 2 0 Median 1.5409 1.4591 3.5306 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46325000 20307000 26018000 2805200 1562400 1242800 0 0 0 23803000 11370000 12432000 19717000 7374400 12343000 0 0 0 0 0 0 32296 573 33958 168946;168947;168948;168949;168950 170213;170214;170215;170216;170217;170218;170219 170219 6 TAAENDFVTLK VEDYKKKYEDEINKRTAAENDFVTLKKDVD INKRTAAENDFVTLKKDVDNAYMIKVELQS R T A L K K 2 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1207.6085 CON__P35908;CON__P35908v2;P35908 CON__P35908 282 292 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 5.5623E-10 129.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 5 9 3 2 0.078879 0.068084 127.45 24 Median 0.093764 0.086543 24.839 4 4 Median 0.098795 0.10456 124.17 7 4 Median 0.089585 0.09903 143.49 3 3 Median 0.031296 0.026333 109.56 8 8 Median 0.023551 0.026532 NaN 1 1 Median 0.0047085 0.0038424 NaN 1 1 Median 417450000 389720000 27724000 53060000 49048000 4011800 105430000 95605000 9823500 37162000 29349000 7812600 145270000 139640000 5633200 37835000 37674000 161070 38692000 38410000 282060 + 32297 764;765 33959 168951;168952;168953;168954;168955;168956;168957;168958;168959;168960;168961;168962;168963;168964;168965;168966;168967;168968;168969;168970;168971;168972;168973;168974;168975;168976;168977;168978;168979;168980;168981 170220;170221;170222;170223;170224;170225;170226;170227;170228;170229;170230;170231;170232;170233;170234;170235;170236;170237;170238;170239;170240;170241;170242;170243;170244;170245;170246;170247;170248;170249;170250 170249 31 TAAENDFVTLKK VEDYKKKYEDEINKRTAAENDFVTLKKDVD NKRTAAENDFVTLKKDVDNAYMIKVELQSK R T A K K D 2 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1335.7034 CON__P35908;CON__P35908v2;P35908 CON__P35908 282 293 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 5.0158E-15 143.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 14 12 23 13 10 0.046331 0.048562 111.42 58 Median 0.055674 0.052166 46.176 11 11 Median 0.041299 0.036525 102.01 11 11 Median 0.096813 0.09647 77.383 9 9 Median 0.014126 0.013959 100.44 12 12 Median 0.051684 0.055906 113.19 10 10 Median 0.081289 0.072449 137.68 5 5 Median 2219400000 2164100000 55269000 343130000 328850000 14277000 370400000 357130000 13270000 132920000 126790000 6132500 410410000 407000000 3412500 435570000 421690000 13879000 526970000 522680000 4298200 + 32298 764;765 33960 168982;168983;168984;168985;168986;168987;168988;168989;168990;168991;168992;168993;168994;168995;168996;168997;168998;168999;169000;169001;169002;169003;169004;169005;169006;169007;169008;169009;169010;169011;169012;169013;169014;169015;169016;169017;169018;169019;169020;169021;169022;169023;169024;169025;169026;169027;169028;169029;169030;169031;169032;169033;169034;169035;169036;169037;169038;169039;169040;169041;169042;169043;169044;169045;169046;169047;169048;169049;169050;169051;169052;169053;169054;169055;169056;169057;169058;169059;169060;169061;169062;169063;169064;169065;169066;169067;169068;169069;169070 170251;170252;170253;170254;170255;170256;170257;170258;170259;170260;170261;170262;170263;170264;170265;170266;170267;170268;170269;170270;170271;170272;170273;170274;170275;170276;170277;170278;170279;170280;170281;170282;170283;170284;170285;170286;170287;170288;170289;170290;170291;170292;170293;170294;170295;170296;170297;170298;170299;170300;170301;170302;170303;170304;170305;170306;170307;170308;170309;170310;170311;170312;170313;170314;170315;170316;170317;170318;170319;170320;170321;170322;170323;170324;170325;170326;170327;170328;170329;170330;170331;170332;170333;170334;170335;170336;170337;170338;170339;170340;170341;170342;170343;170344;170345 170302 95 TAAENEFVTLK VEDFKNKYEDEINKRTAAENEFVTLKKDVD INKRTAAENEFVTLKKDVDAAYMNKVELQA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1221.6241 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 261 271 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0028542 75.294 By MS/MS By MS/MS 1 1 0.17081 0.15164 37.793 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18766 0.1981 NaN 1 1 Median 0.15548 0.11608 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6041500 4810800 1230700 0 0 0 0 0 0 5346000 4271400 1074600 695540 539460 156080 0 0 0 0 0 0 + 32299 741;748;766 33961 169071;169072 170346;170347 170346 2 TAAENEFVTLKK VEDFKNKYEDEINKRTAAENEFVTLKKDVD NKRTAAENEFVTLKKDVDAAYMNKVELQAK R T A K K D 2 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1349.7191 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 261 272 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 0.00011514 103.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 3 3 0.19713 0.19477 126.98 7 Median 0.19795 0.20539 7.5083 2 2 Median 0.1916 0.17451 283.81 2 2 Median 0.14922 0.17023 124.71 2 2 Median 0.15671 0.15921 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 163720000 143790000 19928000 29972000 27961000 2011400 35495000 19843000 15651000 59576000 57768000 1808700 9998100 9541900 456180 28677000 28677000 0 0 0 0 + 32300 741;748;766 33962 169073;169074;169075;169076;169077;169078;169079;169080;169081;169082;169083;169084;169085;169086;169087;169088;169089;169090;169091;169092 170348;170349;170350;170351;170352;170353;170354;170355;170356;170357;170358;170359;170360;170361;170362;170363;170364;170365;170366;170367 170354 20 TAAFALPVLER LGKDICACAATGTGKTAAFALPVLERLIYK GTGKTAAFALPVLERLIYKPRQAPVTRVLV K T A E R L 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 11 0 1186.671 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 238 248 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.020766 53.327 By MS/MS 1 3.0527 3.0734 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0527 3.0734 NaN 1 1 Median NaN NaN NaN 0 0 Median 24193000 5171200 19022000 0 0 0 0 0 0 0 0 0 0 0 0 24193000 5171200 19022000 0 0 0 32301 635 33963 169093 170368 170368 1 TAAFVLAMLSR PPQNLIAQSQSGTGKTAAFVLAMLSRVEPS GTGKTAAFVLAMLSRVEPSDRYPQCLCLSP K T A S R V 3 1 0 0 0 0 0 0 0 0 2 0 1 1 0 1 1 0 0 1 0 0 11 0 1178.6482 Q9NUU7;I3L0H8;F6QDS0;I3L352;H0YD26;A0A1B0GV69;E9PR46;J3QL17;Q9UHL0 Q9NUU7 144 154 DDX19A;DDX25 ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX25 yes no 2 0.024772 33.378 By MS/MS By matching By matching 3 2 1 1.2524 1.2157 17.837 6 Median 1.2198 1.2149 23.673 3 0 Median NaN NaN NaN 0 0 Median 1.307 1.3187 11.406 2 0 Median 1.2473 1.1018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6177800 2614200 3563600 3638000 1502000 2136100 0 0 0 2434400 1062000 1372400 105380 50204 55176 0 0 0 0 0 0 32302 4121 33964 169094;169095;169096;169097;169098;169099 170369 170369 1 TAAFVLPILQK EGRDCLGCAKTGSGKTAAFVLPILQKLSED GSGKTAAFVLPILQKLSEDPYGIFCLVLTP K T A Q K L 2 0 0 0 0 1 0 0 0 1 2 1 0 1 1 0 1 0 0 1 0 0 11 0 1199.7278 Q9Y6V7;M0R1S3;M0QZC0;M0R0K1 Q9Y6V7 53 63 DDX49 Probable ATP-dependent RNA helicase DDX49 yes no 2 0.031209 31.074 By matching By matching By MS/MS 1 1 1 0.89481 0.81512 18.587 3 Median 0.80517 0.79424 NaN 1 0 Median 0.89481 0.81512 NaN 1 0 Median 1.0988 1.1093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2529500 1365500 1164000 484640 331830 152810 185250 88527 96728 1859600 945130 914460 0 0 0 0 0 0 0 0 0 32303 4497 33965 169100;169101;169102 170370 170370 1 TAAGISTPAPVAGLGPR PFYFLSPGAAGPDPRTAAGISTPAPVAGLG AGISTPAPVAGLGPRAPHVQASVRATPVTR R T A P R A 4 1 0 0 0 0 0 3 0 1 1 0 0 0 3 1 2 0 0 1 0 0 17 0 1534.8467 Q9UBU6 Q9UBU6 189 205 FAM8A1 Protein FAM8A1 yes yes 2 1.0904E-07 77.593 By MS/MS By MS/MS 1 2 0.5425 0.46675 7.4228 3 Median 0.47434 0.46675 NaN 1 1 Median 0.58081 0.48857 9.8126 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19263000 12859000 6404200 8906900 6051700 2855300 10356000 6807400 3548900 0 0 0 0 0 0 0 0 0 0 0 0 32304 4248 33966 169103;169104;169105 170371;170372;170373 170371 3 TAAKGEAAAERPGEAAVASSPSK ______________________________ AERPGEAAVASSPSKANGQENGHVKVNGDA K T A S K A 8 1 0 0 0 0 3 2 0 0 0 2 0 0 2 3 1 0 0 1 0 0 23 2 2155.0869 P29966 P29966 8 30 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 4 0.068756 6.8749 By MS/MS 1 0.8358 0.9048 NaN 1 Median 0.8358 0.9048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4200800 2180200 2020600 4200800 2180200 2020600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32305 2175 33967 169106 170374 170374 1 TAAPSPSLLYK SWASDHNYNAVKPEKTAAPSPSLLYKSTKE KPEKTAAPSPSLLYKSTKEDRRSEEKAAAM K T A Y K S 2 0 0 0 0 0 0 0 0 0 2 1 0 0 2 2 1 0 1 0 0 0 11 0 1146.6285 Q9BTC0 Q9BTC0 519 529 DIDO1 Death-inducer obliterator 1 yes yes 2 0.03568 29.473 By matching By MS/MS 2 1 0.94848 0.88517 21.806 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92793 1.0683 26.596 2 0 Median 0.94848 0.88243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17472000 8497300 8974600 0 0 0 0 0 0 16822000 8128900 8692700 650350 368440 281920 0 0 0 0 0 0 32306 3824 33968 169107;169108;169109 170375 170375 1 TAAPTTASAAPQGPLR PEGRTVAFPSTHPPRTAAPTTASAAPQGPL AAPTTASAAPQGPLRGRPPIATFSANPEAK R T A L R G 5 1 0 0 0 1 0 1 0 0 1 0 0 0 3 1 3 0 0 0 0 0 16 0 1508.7947 Q96L91 Q96L91 1488 1503 EP400 E1A-binding protein p400 yes yes 2 2.0204E-10 111.5 By MS/MS By MS/MS By matching 1 2 1 0.61853 0.58524 14.902 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57114 0.60218 NaN 1 0 Median 0.72249 0.63221 14.952 2 0 Median NaN NaN NaN 0 0 Median 0.58567 0.49002 NaN 1 0 Median 16029000 10155000 5873300 0 0 0 0 0 0 12126000 7781000 4345100 2821500 1695600 1125900 0 0 0 1081100 678830 402320 32307 3700 33969 169110;169111;169112;169113 170376;170377;170378;170379;170380 170377 5 TAASGIPYHSEVPVSLK CVINNQEMGFYKDAKTAASGIPYHSEVPVS ASGIPYHSEVPVSLKEAVCEVALDYKKKKH K T A L K E 2 0 0 0 0 0 1 1 1 1 1 1 0 0 2 3 1 0 1 2 0 0 17 0 1754.9203 Q01082;A0A087WUZ3 Q01082 2242 2258 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 5.4374E-12 142.83 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 3 3 3 1 2 0.76943 0.7157 12.555 13 Median 0.96911 0.93392 NaN 1 0 Median 0.89183 0.79563 0.74962 3 0 Median 0.66466 0.73197 13.304 3 0 Plateau 0.75527 0.70389 2.7555 3 0 Median 0.67215 0.70335 NaN 1 0 Median 0.84533 0.72541 13.479 2 0 Median 203990000 115940000 88051000 17503000 8824600 8678100 49028000 25784000 23243000 113590000 67960000 45627000 13751000 7453500 6297300 8078300 4753000 3325300 2040100 1160100 879990 32308 2681 33970 169114;169115;169116;169117;169118;169119;169120;169121;169122;169123;169124;169125;169126 170381;170382;170383;170384;170385;170386;170387;170388;170389;170390;170391;170392;170393;170394 170386 14 TAASGVEANSRPLDHAQPPSSLVIDKESEVYK SSENISNFNNALESKTAASGVEANSRPLDH PPSSLVIDKESEVYKMLQEKQELNEPPKQS K T A Y K M 4 1 1 2 0 1 3 1 1 1 2 2 0 0 3 5 1 0 1 3 0 0 32 2 3394.7005 O00151 O00151 167 198 PDLIM1 PDZ and LIM domain protein 1 yes yes 4 0.0044605 23.168 By MS/MS By matching 1 1 0.60578 0.68148 38.465 2 Median 0.49038 0.5192 NaN 1 0 Median 0.74834 0.8945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25620000 16577000 9043600 25238000 16369000 8869000 382160 207550 174610 0 0 0 0 0 0 0 0 0 0 0 0 32309 1442 33971 169127;169128 170395;170396 170395 2 TAATLATHELR LTSQTKLHEDLCEKRTAATLATHELRAVKG CEKRTAATLATHELRAVKGPLLYCARPPQD R T A L R A 3 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 0 0 11 0 1182.6357 Q8N1G4 Q8N1G4 371 381 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 7.7313E-15 185.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.2701 1.1381 11.15 5 Median 1.2701 1.2016 NaN 1 1 Median 1.3183 1.1381 NaN 1 0 Median 1.2764 1.3388 NaN 1 0 Median 1.2144 1.038 6.0549 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68574000 31083000 37491000 17976000 8874300 9101500 38560000 16752000 21808000 5002800 2408800 2594000 7035300 3047900 3987400 0 0 0 0 0 0 32310 3359 33972 169129;169130;169131;169132;169133 170397;170398;170399;170400;170401;170402 170401 5 TAATSVPAYEPLDSLDR DWVPPPPPVRERSTRTAATSVPAYEPLDSL ATSVPAYEPLDSLDRRRDGWSLDRDRGDRD R T A D R R 3 1 0 2 0 0 1 0 0 0 2 0 0 0 2 2 2 0 1 1 0 0 17 0 1804.8843 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 556 572 RBM15 Putative RNA-binding protein 15 yes no 2 2.301E-07 93.959 By MS/MS By MS/MS By matching 2 3 1 0.62179 0.67106 30.376 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62179 0.67106 2.5429 2 0 Median NaN NaN NaN 0 0 Median 0.61657 0.64659 45.565 3 0 Median 0.84905 0.69962 NaN 1 0 Median 36414000 21077000 15337000 0 0 0 0 0 0 26330000 15624000 10706000 0 0 0 9655300 5201500 4453800 428280 251340 176940 32311 60 33973 169134;169135;169136;169137;169138;169139 170403;170404;170405 170403 3 TAATVTSALQPPVLSLTQPTQVGVGK TAVVLSSSVQRTAGKTAATVTSALQPPVLS PVLSLTQPTQVGVGKQGQPTPLVIQQPPKP K T A G K Q 3 0 0 0 0 3 0 2 0 0 3 1 0 0 3 2 5 0 0 4 0 0 26 0 2563.4221 O00268;A0A0G2JRY5 O00268 709 734 TAF4 Transcription initiation factor TFIID subunit 4 yes no 3 0.023519 13.407 By MS/MS 1 0.65708 0.70901 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65708 0.70901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2238200 1323000 915230 0 0 0 0 0 0 2238200 1323000 915230 0 0 0 0 0 0 0 0 0 32312 1453 33974 169140 170406 170406 1 TAAVANSMNYLTK VDDYARFTILDSQGKTAAVANSMNYLTKKG GKTAAVANSMNYLTKKGMSSKEIYDDSFIR K T A T K K 3 0 2 0 0 0 0 0 0 0 1 1 1 0 0 1 2 0 1 1 0 0 13 0 1382.6864 Q9NYU2 Q9NYU2 732 744 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 1.5414E-06 112.13 By MS/MS 1 1.7638 1.6863 NaN 1 Median 1.7638 1.6863 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46127000 18351000 27776000 46127000 18351000 27776000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32313 4179 33975 169141 170407 170407 1 TAAVWEEIVGESNDK HPEFGQVLASCSFDRTAAVWEEIVGESNDK TAAVWEEIVGESNDKLRGQSHWVKRTTLVD R T A D K L 2 0 1 1 0 0 3 1 0 1 0 1 0 0 0 1 1 1 0 2 0 0 15 0 1646.7788 Q96EE3;K7ELV2;K7EP88;K7EPZ5 Q96EE3 82 96 SEH1L Nucleoporin SEH1 yes no 2 6.6985E-10 107.85 By MS/MS By matching 2 1 1.0294 1.078 13.886 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98032 0.9839 12.922 2 0 Median 1.3978 1.1793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16587000 8100300 8486400 0 0 0 0 0 0 15352000 7695900 7656600 1234100 404360 829760 0 0 0 0 0 0 32314 3634 33976 169142;169143;169144 170408;170409;170410 170410 3 TAAVWEEIVGESNDKLR HPEFGQVLASCSFDRTAAVWEEIVGESNDK AVWEEIVGESNDKLRGQSHWVKRTTLVDSR R T A L R G 2 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 1 1 0 2 0 0 17 1 1915.964 Q96EE3;K7ELV2;K7EP88;K7EPZ5 Q96EE3 82 98 SEH1L Nucleoporin SEH1 yes no 3 7.6001E-06 74.257 By matching By MS/MS By matching 1 3 1 1.1888 1.2719 12.03 5 Median 1.2781 1.2719 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1502 1.3061 12.207 3 0 Median 1.199 1.041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21511000 9582500 11928000 3675500 1838600 1836800 0 0 0 10679000 4938300 5740800 7156100 2805600 4350500 0 0 0 0 0 0 32315 3634 33977 169145;169146;169147;169148;169149 170411;170412;170413 170413 3 TAAYAIPMLQLLLHR EGKDLLARARTGSGKTAAYAIPMLQLLLHR TAAYAIPMLQLLLHRKATGPVVEQAVRGLV K T A H R K 3 1 0 0 0 1 0 0 1 1 4 0 1 0 1 0 1 0 1 0 0 0 15 0 1709.9651 Q9NY93;G3V0G3;H7C3E9;F8WDT8;F8WEI3 Q9NY93 58 72 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2;3 0.0058247 34.692 By matching By MS/MS By matching By MS/MS 2 2 2 3 1.0673 1.0899 16.52 9 Median 1.3661 1.2915 7.2133 2 0 Median 0.96866 0.84726 8.3486 2 0 Median 1.1009 1.1011 11.576 2 0 Median NaN NaN NaN 0 0 Median 1.0673 1.0899 7.5596 3 0 Median NaN NaN NaN 0 0 Median 6681300 3259300 3422000 281670 137200 144470 1404400 681560 722890 343580 167000 176580 0 0 0 4651600 2273600 2378000 0 0 0 32316 4173 33978 169150;169151;169152;169153;169154;169155;169156;169157;169158 170414;170415;170416 170416 3 TAAYGHFGR VIVRDLDLKKPIYQRTAAYGHFGRDSFPWE KPIYQRTAAYGHFGRDSFPWEVPKKLKY__ R T A G R D 2 1 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 978.46716 P31153 P31153 374 382 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 0.0013342 82.671 By MS/MS By MS/MS 2 1 1.2181 1.219 10.903 3 Median 1.2656 1.2607 4.7599 2 0 Median 1.2181 1.0535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5869200 2564600 3304500 2452700 1103600 1349100 3416500 1461000 1955400 0 0 0 0 0 0 0 0 0 0 0 0 32317 2202 33979 169159;169160;169161 170417;170418;170419;170420 170420 4 TAAYVNAIEK IMRTAMKYNLGLDLRTAAYVNAIEKVFKVY GLDLRTAAYVNAIEKVFKVYNEAGVTFT__ R T A E K V 3 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 10 0 1078.5659 P00367;P49448 P00367 536 545 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.00036469 82.287 By MS/MS By MS/MS 1 1 1.1471 1.0131 17.79 2 Median 0.96858 0.89335 NaN 1 0 Median 1.3584 1.1489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49598000 22949000 26648000 24974000 12939000 12034000 24624000 10010000 14614000 0 0 0 0 0 0 0 0 0 0 0 0 32318 1814 33980 169162;169163 170421;170422;170423;170424;170425 170422 5 TADDPSLSLIK FFRSLKDRGFELTFKTADDPSLSLIKYGEF LTFKTADDPSLSLIKYGEFLYDNLIIFSPS K T A I K Y 1 0 0 2 0 0 0 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 11 0 1158.6132 P39656;A0A0C4DGS1;U3KQ84 P39656 78 88 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 0.00014698 88.681 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.1683 1.0218 97.265 9 Median 1.0763 1.0671 29.812 2 0 Median 1.166 0.99302 NaN 1 0 Median 0.99018 1.0218 173.31 3 0 Median 1.1934 1.0379 6.5043 2 0 Median NaN NaN NaN 0 0 Median 1.3159 1.1062 NaN 1 0 Median 132550000 67078000 65471000 49479000 23648000 25831000 32257000 15568000 16689000 43392000 24725000 18667000 6372600 2641900 3730700 0 0 0 1048100 494500 553610 32319 253 33981 169164;169165;169166;169167;169168;169169;169170;169171;169172;169173 170426;170427;170428;170429;170430;170431 170428 6 TADGIVSHLK IFRDGEEAGAYDGPRTADGIVSHLKKQAGP YDGPRTADGIVSHLKKQAGPASVPLRTEEE R T A L K K 1 0 0 1 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1039.5662 P30101 P30101 120 129 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0007506 98.033 By MS/MS By MS/MS By MS/MS 1 1 2 1.0717 0.94749 113.07 4 Median 1.1111 1.044 NaN 1 0 Median 1.1971 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.32546 0.30145 152.67 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41749000 18781000 22968000 6273900 2757500 3516400 31091000 13310000 17781000 0 0 0 4384400 2713500 1670800 0 0 0 0 0 0 32320 2189 33982 169174;169175;169176;169177 170432;170433;170434;170435 170435 4 TADGIVSHLKK IFRDGEEAGAYDGPRTADGIVSHLKKQAGP DGPRTADGIVSHLKKQAGPASVPLRTEEEF R T A K K Q 1 0 0 1 0 0 0 1 1 1 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1167.6612 P30101 P30101 120 130 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.023472 36.334 By matching By MS/MS 2 1 1.2879 1.2267 10.557 3 Median 1.1804 1.1276 11.908 2 0 Median 1.3405 1.2591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13005000 5513000 7491900 9122900 3880000 5242900 3882100 1633100 2249000 0 0 0 0 0 0 0 0 0 0 0 0 32321 2189 33983 169178;169179;169180 170436;170437 170436 2 TADKHKDVIINQEGEYIK SKIPSTPKLIPKVTKTADKHKDVIINQEGE KHKDVIINQEGEYIKMFMRGRPITMFIPSD K T A I K M 1 0 1 2 0 1 2 1 1 3 0 3 0 0 0 0 1 0 1 1 0 0 18 2 2100.0851 Q9HC35 Q9HC35 211 228 EML4 Echinoderm microtubule-associated protein-like 4 yes yes 3;4 1.819E-06 72.583 By MS/MS 3 0.82222 0.90036 9.304 3 Median 0.82222 0.90036 9.304 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21210000 11662000 9547700 21210000 11662000 9547700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32322 4024 33984 169181;169182;169183 170438;170439;170440 170438 3 TADMDVGQIGFHR NNVNVVYTPWSNLKKTADMDVGQIGFHRQK KKTADMDVGQIGFHRQKDVKIVTVEKKVNE K T A H R Q 1 1 0 2 0 1 0 2 1 1 0 0 1 1 0 0 1 0 0 1 0 0 13 0 1445.6721 Q86WR0 Q86WR0 101 113 CCDC25 Coiled-coil domain-containing protein 25 yes yes 2;3 2.271E-16 152.28 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.4739 1.2528 31.35 5 Median 1.2261 1.1611 43.464 2 1 Median 1.4739 1.2528 NaN 1 0 Median 0.98917 0.94385 NaN 1 0 Median 2.1362 1.7569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22420000 10082000 12338000 16760000 7690900 9068700 1516700 698570 818090 3666300 1514200 2152100 477610 178730 298880 0 0 0 0 0 0 32323 3295 33985 169184;169185;169186;169187;169188 170441;170442;170443 170441 3 TADVTSLFGGEDTSR SVKKLKRAVNLPRSKTADVTSLFGGEDTSR TADVTSLFGGEDTSRSSTRGSLNPENPVQV K T A S R S 1 1 0 2 0 0 1 2 0 0 1 0 0 1 0 2 3 0 0 1 0 0 15 0 1554.7162 O00443 O00443 614 628 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.00035184 64.65 By matching By MS/MS By matching 1 1 1 1.111 1.017 4.4911 3 Median NaN NaN NaN 0 0 Median 1.111 0.98066 NaN 1 0 Median 0.91502 1.017 NaN 1 0 Median 1.2246 1.0723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3566700 1949200 1617500 0 0 0 456920 240130 216790 2823600 1565700 1257900 286140 143380 142770 0 0 0 0 0 0 32324 1465 33986 169189;169190;169191 170444 170444 1 TAEDAKDFFKR EHVLIDVGTGYYVEKTAEDAKDFFKRKIDF YVEKTAEDAKDFFKRKIDFLTKQMEKIQPA K T A K R K 2 1 0 2 0 0 1 0 0 0 0 2 0 2 0 0 1 0 0 0 0 0 11 2 1326.6568 Q99471;H3BPF6 Q99471 95 105 PFDN5 Prefoldin subunit 5 yes no 2;3 5.3491E-05 91.867 By MS/MS By MS/MS 2 1 1.1013 1.1577 14.46 3 Median 1.0102 1.0619 12.21 2 0 Median 1.2687 1.2982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21444000 10201000 11243000 18921000 9104500 9816900 2522800 1096400 1426400 0 0 0 0 0 0 0 0 0 0 0 0 32325 3747 33987 169192;169193;169194 170445;170446;170447 170445 3 TAEDDETPVDLNK LQLLTFSAMCQNLARTAEDDETPVDLNKHL ARTAEDDETPVDLNKHLYQIEKPCKEAMTR R T A N K H 1 0 1 3 0 0 2 0 0 0 1 1 0 0 1 0 2 0 0 1 0 0 13 0 1445.6522 O00443 O00443 520 532 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.00046587 83 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0116 0.89296 24.451 4 Median 1.2348 1.1636 NaN 1 0 Median 1.0732 0.92372 NaN 1 0 Median 0.57674 0.64283 NaN 1 0 Median 0.95361 0.86322 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27688000 12329000 15359000 19543000 8169400 11374000 2760200 1222300 1537900 3293400 1865300 1428100 2090700 1072100 1018700 0 0 0 0 0 0 32326 1465 33988 169195;169196;169197;169198 170448;170449 170449 2 TAEEENPEHVEIQK AEIYEQEYIKLNQQKTAEEENPEHVEIQKM KTAEEENPEHVEIQKMMDSLFLKLDALSNF K T A Q K M 1 0 1 0 0 1 5 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1651.7689 O00566 O00566 485 498 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 2;3 0.0045828 50.284 By MS/MS By matching 3 2 0.82552 0.73618 18.653 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83595 0.83042 10.538 2 0 Median 0.75719 0.63465 14.489 2 0 Median 9909800 5595000 4314800 0 0 0 0 0 0 0 0 0 0 0 0 7772900 4323100 3449900 2136900 1271900 864980 32327 1471 33989 169199;169200;169201;169202;169203 170450;170451;170452;170453 170450 4 TAEELMNFSK FDGMITETKGTVLIKTAEELMNFSKGEENL TVLIKTAEELMNFSKGEENLMDAQVKAIAD K T A S K G 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 10 0 1168.5434 P50990;H7C4C8 P50990 261 270 CCT8 T-complex protein 1 subunit theta yes no 2 0.00036244 87.308 By MS/MS By matching By matching By matching 2 1 1 1 0.96808 0.87568 29.913 5 Median 1.0064 0.9356 9.3602 2 0 Median 1.1721 0.99216 NaN 1 0 Median 0.47713 0.48399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96808 0.83948 NaN 1 0 Median 63765000 32033000 31732000 37229000 18466000 18763000 18003000 7470000 10533000 7855600 5736000 2119600 0 0 0 0 0 0 677370 360920 316450 32328 2423 33990 169204;169205;169206;169207;169208 170454;170455 170454 2 TAEELMNFSKGEENLMDAQVK FDGMITETKGTVLIKTAEELMNFSKGEENL NFSKGEENLMDAQVKAIADTGANVVVTGGK K T A V K A 2 0 2 1 0 1 4 1 0 0 2 2 2 1 0 1 1 0 0 1 0 0 21 1 2383.1036 P50990;H7C4C8 P50990 261 281 CCT8 T-complex protein 1 subunit theta yes no 3 4.018E-12 74.207 By MS/MS 2 1.4766 1.395 29.446 2 Median 1.4766 1.395 29.446 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32468000 13274000 19193000 32468000 13274000 19193000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32329 2423 33991 169209;169210 170456;170457;170458 170456 3 TAEEVAALIR VWAGQKRLGQLAKWKTAEEVAALIRSLPVE LAKWKTAEEVAALIRSLPVEEQPKQIIVTR K T A I R S 3 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1071.5924 Q6P2Q9 Q6P2Q9 1841 1850 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 7.3296E-24 163.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 3 1.2116 1.1701 29.213 11 Median 1.1608 1.0895 NaN 1 0 Median 1.6984 1.4154 26.917 2 0 Median 1.0175 1.1092 NaN 1 0 Median 1.432 1.2493 3.2124 2 0 Median 1.0633 1.0876 14.997 2 0 Median 1.2116 0.98111 57.378 3 0 Median 125740000 49917000 75819000 13996000 5922100 8074000 18471000 6869900 11601000 40806000 13826000 26980000 7218800 2802700 4416100 36029000 16427000 19602000 9214400 4069100 5145300 32330 3157 33992 169211;169212;169213;169214;169215;169216;169217;169218;169219;169220;169221;169222 170459;170460;170461;170462;170463;170464;170465;170466;170467;170468;170469;170470;170471;170472 170462 14 TAEFQVAR VDISATKAVHISNPKTAEFQVARTTLLPGL VHISNPKTAEFQVARTTLLPGLLKTIAANR K T A A R T 2 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 8 0 920.47158 Q9NSD9 Q9NSD9 444 451 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.004522 102.71 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32331 4102 33993 169223 170473 170473 1 TAEHEAAQQDLQSK AERRWEEVQSYIRKRTAEHEAAQQDLQSKF RTAEHEAAQQDLQSKFVAKENEVQSLHSKL R T A S K F 3 0 0 1 0 3 2 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 14 0 1554.7274 Q86UP2 Q86UP2 508 521 KTN1 Kinectin yes yes 3 0.00026188 53.869 By matching By MS/MS By matching 2 1 1 1.45 1.3387 11.009 4 Linear 1.0611 1.0573 16.055 2 0 Median 1.3615 1.1981 NaN 1 0 Median 1.0293 1.1187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2242800 1030700 1212100 317490 154130 163360 1784300 815730 968530 141020 60836 80187 0 0 0 0 0 0 0 0 0 32332 3280 33994 169224;169225;169226;169227 170474;170475 170475 2 TAELNVQVPEEPTHLDQR EEMQPLHEDNFSREKTAELNVQVPEEPTHL LNVQVPEEPTHLDQRVIGDTHASEVSQKPN K T A Q R V 1 1 1 1 0 2 3 0 1 0 2 0 0 0 2 0 2 0 0 2 0 0 18 0 2075.0283 Q5JRA6;A0A0A0MRH6 Q5JRA6 1071 1088 MIA3 Melanoma inhibitory activity protein 3 yes no 3 5.1788E-08 70.942 By MS/MS By MS/MS 1 1 1.2864 1.1474 13.739 2 Median 1.3473 1.2645 NaN 1 1 Median 1.2282 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17276000 6551000 10725000 14304000 4993800 9310500 2971600 1557200 1414500 0 0 0 0 0 0 0 0 0 0 0 0 32333 3049 33995 169228;169229 170476;170477 170476 2 TAELQEELSGEK KETELQREMHEMAQKTAELQEELSGEKNRL AQKTAELQEELSGEKNRLAGELQLLLEEIK K T A E K N 1 0 0 0 0 1 4 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1332.6409 P49454;A0A087WTY4 P49454 2632 2643 CENPF Centromere protein F yes no 2 0.001303 54.608 By matching By MS/MS 1 1 0.96252 0.97324 9.5747 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84806 0.90953 NaN 1 0 Median 1.0924 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8557400 3803800 4753600 0 0 0 0 0 0 7169500 3161800 4007700 1388000 642000 745960 0 0 0 0 0 0 32334 2383 33996 169230;169231 170478 170478 1 TAENATSGETLEENEAGD ASRKTQKKKKKKASKTAENATSGETLEENE NATSGETLEENEAGD_______________ K T A G D - 3 0 2 1 0 0 5 2 0 0 1 0 0 0 0 1 3 0 0 0 0 0 18 0 1836.7497 Q9UQ80 Q9UQ80 377 394 PA2G4 Proliferation-associated protein 2G4 yes yes 2 2.5771E-60 188.96 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 212740000 0 0 23804000 0 0 7169900 0 0 40712000 0 0 141050000 0 0 0 0 0 0 0 0 32335 4360 33997 169232;169233;169234;169235;169236;169237 170479;170480;170481;170482;170483;170484;170485;170486;170487;170488 170486 10 TAESQTPTPSATSFFSGK SEESSHYSTEKESEKTAESQTPTPSATSFF SQTPTPSATSFFSGKSPVTTLLECMHKLGN K T A G K S 2 0 0 0 0 1 1 1 0 0 0 1 0 2 2 4 4 0 0 0 0 0 18 0 1842.8636 P55265;A0A3B3IRQ9;A0A3B3ISX1;A0A3B3ITG9 P55265 596 613 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 2.8157E-13 123.02 By matching By MS/MS By MS/MS By matching 1 2 3 1 0.84951 0.84806 11.531 7 Median 0.94037 0.92792 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83992 0.89823 15.231 2 0 Median NaN NaN NaN 0 0 Median 0.75803 0.75248 10.977 3 0 Median 1.0269 0.84806 NaN 1 0 Median 81308000 43863000 37445000 3456900 1660300 1796600 0 0 0 38121000 21474000 16647000 0 0 0 38016000 19857000 18159000 1714000 870690 843310 32336 2498 33998 169238;169239;169240;169241;169242;169243;169244 170489;170490;170491;170492;170493;170494;170495;170496 170490 8 TAEVLLDAR GQISSQQVAVEKLKKTAEVLLDARGSLLPA VEKLKKTAEVLLDARGSLLPAKNDIQKTLD K T A A R G 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 986.53966 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;H0YC82 E9PHM6 2023 2031 DST Dystonin yes no 2 0.00094944 88.948 By MS/MS By MS/MS 1 1 0.89291 0.76346 52.498 2 Median NaN NaN NaN 0 0 Median 1.3164 1.1066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60566 0.52671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6011800 2601700 3410100 0 0 0 5282900 2185200 3097700 0 0 0 728950 416480 312470 0 0 0 0 0 0 32337 934 33999 169245;169246 170497;170498;170499;170500 170498 4 TAEVPVSEASGQAPPAK GIGGDQGPHDKGVKRTAEVPVSEASGQAPP EVPVSEASGQAPPAKAAKQDIEDTASDAKR R T A A K A 4 0 0 0 0 1 2 1 0 0 0 1 0 0 3 2 1 0 0 2 0 0 17 0 1637.8261 P48382;F8W689 P48382 433 449 RFX5 DNA-binding protein RFX5 yes no 2 0.0010989 53.569 By MS/MS 1 0.49888 0.52982 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49888 0.52982 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2111800 1519100 592660 0 0 0 0 0 0 2111800 1519100 592660 0 0 0 0 0 0 0 0 0 32338 2360 34000 169247 170501 170501 1 TAFGIISTVK STNCRAALLHGETRKTAFGIISTVKKPRPS GETRKTAFGIISTVKKPRPSEGDEDCLPAS K T A V K K 1 0 0 0 0 0 0 1 0 2 0 1 0 1 0 1 2 0 0 1 0 0 10 0 1035.5964 P78346;Q5VU10 P78346 237 246 RPP30 Ribonuclease P protein subunit p30 yes no 2 0.019154 53.327 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0352 0.97971 69.614 4 Median 1.0183 0.98031 NaN 1 0 Median 4.2876 3.7339 NaN 1 0 Median 1.0418 0.97912 NaN 1 1 Median 1.0288 0.84889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10914000 5318000 5596400 1736600 884940 851610 664610 165100 499500 7669600 3890000 3779600 843630 378000 465630 0 0 0 0 0 0 32339 2641 34001 169248;169249;169250;169251 170502;170503 170502 2 TAFQEALDAAGDK ______________________________ SKTAFQEALDAAGDKLVVVDFSATWCGPCK K T A D K L 4 0 0 2 0 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1335.6307 P10599 P10599 9 21 TXN Thioredoxin yes yes 2 4.4307E-07 110.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 2 0.8525 0.9073 38.561 11 Median 1.1549 1.0446 37.191 3 0 Plateau 1.1693 0.9641 8.5881 2 0 Median 0.54483 0.549 89.003 2 1 Median 0.98585 0.81449 18.425 2 1 Median 0.72832 0.80352 17.873 2 1 Median NaN NaN NaN 0 0 Median 367330000 165410000 201910000 79391000 34763000 44627000 97378000 41735000 55643000 179660000 83158000 96501000 2547200 1249500 1297800 8353300 4508300 3845000 0 0 0 32340 1942 34002 169252;169253;169254;169255;169256;169257;169258;169259;169260;169261;169262 170504;170505;170506;170507;170508;170509;170510;170511;170512;170513;170514;170515;170516;170517;170518;170519 170513 16 TAFSENEDDESRPAVALIR TVLKIISTGRKNVFKTAFSENEDDESRPAV ENEDDESRPAVALIRKLIAVLESIERLPLH K T A I R K 3 2 1 2 0 0 3 0 0 1 1 0 0 1 1 2 1 0 0 1 0 0 19 1 2119.0182 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 952 970 HECTD1 E3 ubiquitin-protein ligase HECTD1 yes no 3 3.6314E-08 72.184 By MS/MS By MS/MS 1 2 0.79704 0.80488 14.641 3 Median 0.81059 0.86686 NaN 1 0 Median 0.74552 0.7253 14.723 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22353000 11746000 10607000 11465000 5902800 5561800 10888000 5843200 5044700 0 0 0 0 0 0 0 0 0 0 0 0 32341 137 34003 169263;169264;169265 170520;170521;170522 170520 3 TAFYLAEFFVNEAR WKNLDGISHAPNAVKTAFYLAEFFVNEARK KTAFYLAEFFVNEARKNNHHFKSESEEEKA K T A A R K 3 1 1 0 0 0 2 0 0 0 1 0 0 3 0 0 1 0 1 1 0 0 14 0 1676.8199 Q92820 Q92820 267 280 GGH Gamma-glutamyl hydrolase yes yes 2 0.043923 24.853 By matching By MS/MS By matching 1 2 1 1.1797 1.082 23.488 4 Median NaN NaN NaN 0 0 Median 1.2931 1.1286 NaN 1 0 Median 1.2202 1.2135 22.189 2 0 Median NaN NaN NaN 0 0 Median 0.70462 0.80378 NaN 1 0 Median NaN NaN NaN 0 0 Median 1764400 760290 1004100 0 0 0 721450 276380 445060 952340 433850 518500 0 0 0 90646 50057 40589 0 0 0 32342 3560 34004 169266;169267;169268;169269 170523 170523 1 TAGAPTGTVPQQLQVHGVQQSVPVTQER PPEQSPVQANSSSSKTAGAPTGTVPQQLQV QVHGVQQSVPVTQERSVVQATPQAPKPGPV K T A E R S 2 1 0 0 0 6 1 3 1 0 1 0 0 0 3 1 4 0 0 5 0 0 28 0 2912.5104 P22670 P22670 220 247 RFX1 MHC class II regulatory factor RFX1 yes yes 3 4.812E-29 80.359 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.65413 0.65175 13.927 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60755 0.65676 5.1239 2 0 Median 0.65413 0.55621 NaN 1 0 Median 0.77684 0.81704 NaN 1 0 Median 0.79281 0.65175 NaN 1 0 Median 50312000 30708000 19604000 0 0 0 0 0 0 42160000 26280000 15880000 3363300 1910500 1452900 4213000 2223200 1989800 576050 294660 281390 32343 2104 34005 169270;169271;169272;169273;169274 170524;170525;170526;170527 170525 4 TAGEEEMIK FIRCNEAGDIEAKSKTAGEEEMIKIRSCAE IEAKSKTAGEEEMIKIRSCAERETKKKDDI K T A I K I 1 0 0 0 0 0 3 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 9 0 1006.4641 Q14331;E9PRR7;E9PLY7 Q14331 171 179 FRG1 Protein FRG1 yes no 2 0.027535 51.066 By MS/MS 1 0.80134 0.67758 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80134 0.67758 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787200 983480 803670 0 0 0 0 0 0 0 0 0 1787200 983480 803670 0 0 0 0 0 0 32344 2874 34006 169275 170528 170528 1 TAGLRPMETK MQRTMKLYRLPETPKTAGLRPMETKDIPVV PETPKTAGLRPMETKDIPVVHQLLTRYLKQ K T A T K D 1 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 2 0 0 0 0 0 10 1 1102.5805 P30419 P30419 335 344 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 0.062428 40.352 By matching By MS/MS By matching 1 2 1 1.2004 1.1 12.906 4 Median 0.89897 0.91234 NaN 1 0 Median 1.2004 1.1 5.5232 2 0 Median NaN NaN NaN 0 0 Median 1.3151 1.2341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5108200 2306100 2802100 1551800 749230 802620 3403000 1490500 1912600 0 0 0 153340 66390 86947 0 0 0 0 0 0 32345 2193 34007 169276;169277;169278;169279 170529 170529 1 TAGPLESSETEEASQLK QTSACRLQEELEKLRTAGPLESSETEEASQ GPLESSETEEASQLKERLEKEKKLTSDLGR R T A L K E 2 0 0 0 0 1 4 1 0 0 2 1 0 0 1 3 2 0 0 0 0 0 17 0 1775.8425 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1334 1350 RRBP1 Ribosome-binding protein 1 yes no 2 2.841E-05 55.452 By matching By MS/MS 1 2 1.2897 1.1052 18.923 3 Plateau NaN NaN NaN 0 0 Median 1.0167 0.87121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0383 0.91679 26.436 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4911800 2118900 2792900 0 0 0 994740 441630 553100 0 0 0 3917100 1677200 2239800 0 0 0 0 0 0 32346 4222 34008 169280;169281;169282 170530;170531;170532 170532 3 TAGRPGKENINDEPVDMSAR EEKLNGNLRPHGDNRTAGRPGKENINDEPV GKENINDEPVDMSARRSEPERGRLTPSPDI R T A A R R 2 2 2 2 0 0 2 2 0 1 0 1 1 0 2 1 1 0 0 1 0 0 20 2 2156.028 A0A0U1RRM1;Q8WXI9;A0A0U1RR34;A0A0U1RRK3 A0A0U1RRM1 91 110 GATAD2B Transcriptional repressor p66-beta yes no 3;4 1.5772E-15 87.49 By MS/MS By MS/MS 2 1 0.87181 0.97805 39.451 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64282 0.72116 43.092 2 1 Median NaN NaN NaN 0 0 Median 0.95149 1.1131 NaN 1 1 Median NaN NaN NaN 0 0 Median 23974000 14150000 9824200 0 0 0 0 0 0 18351000 11268000 7082700 0 0 0 5623200 2881700 2741500 0 0 0 32347 311 34009 169283;169284;169285 170533;170534;170535;170536 170535 4 TAGTLFGEGFR LKAAEHRQTVLESIRTAGTLFGEGFRAFVT ESIRTAGTLFGEGFRAFVTDWDKVTATVAG R T A F R A 1 1 0 0 0 0 1 3 0 0 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1154.572 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 214 224 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.00015742 108.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 1.5759 1.5052 20.314 8 Median 1.2613 1.1875 NaN 1 0 Median 1.6784 1.4509 NaN 1 0 Median 1.8812 1.9191 29.16 2 1 Median NaN NaN NaN 0 0 Median 1.6755 1.6833 8.119 3 0 Plateau 1.6344 1.3301 NaN 1 0 Median 96825000 36821000 60004000 34901000 15388000 19514000 16771000 6318400 10452000 33182000 10565000 22617000 0 0 0 10913000 4165700 6747500 1058300 384760 673520 32348 1140;4133;3098 34010 169286;169287;169288;169289;169290;169291;169292;169293 170537;170538;170539;170540;170541;170542;170543;170544 170538 8 TAGVKVETTEDLVAK TSKLSVISVEDPPQRTAGVKVETTEDLVAK TAGVKVETTEDLVAKLKEIGRI________ R T A A K L 2 0 0 1 0 0 2 1 0 0 1 2 0 0 0 0 3 0 0 3 0 0 15 1 1559.8407 P38117 P38117 234 248 ETFB Electron transfer flavoprotein subunit beta yes yes 2;3 2.0973E-18 182.07 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 1.2696 1.2095 24.672 8 Median 0.95353 0.96661 0.52773 2 0 Median 1.5606 1.4223 1.6071 2 0 Median 0.92243 0.91865 17.578 2 1 Median 1.6719 1.5063 3.4425 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 219540000 101930000 117610000 139730000 68637000 71094000 42434000 15736000 26698000 23277000 11929000 11348000 14097000 5625500 8471400 0 0 0 0 0 0 32349 2272 34011 169294;169295;169296;169297;169298;169299;169300;169301;169302;169303 170545;170546;170547;170548;170549;170550;170551;170552;170553;170554;170555;170556;170557;170558;170559;170560;170561;170562;170563;170564 170560 20 TAGWNIPMGLLYSK NNLKDKKSCHTAVDRTAGWNIPMGLLYSKI RTAGWNIPMGLLYSKINNCKFDEFFSAGCA R T A S K I 1 0 1 0 0 0 0 2 0 1 2 1 1 0 1 1 1 1 1 0 0 0 14 0 1549.7963 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 480 493 yes no 2 6.7402E-05 90.434 By MS/MS By MS/MS 1 1 0.082638 0.074453 117.14 2 Median 0.035084 0.03252 NaN 1 1 Median 0.19465 0.17045 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10339000 9247800 1090800 6345500 6065200 280240 3993100 3182500 810520 0 0 0 0 0 0 0 0 0 0 0 0 + 32350 769 34012 169304;169305 170565;170566;170567 170565 3 TAGYPNVNIHNFTTSWR KKSAKDALLLWCQMKTAGYPNVNIHNFTTS GYPNVNIHNFTTSWRDGMAFNALIHKHRPD K T A W R D 1 1 3 0 0 0 0 1 1 1 0 0 0 1 1 1 3 1 1 1 0 0 17 0 1976.9493 Q01082;A0A087WUZ3;F8W6C1 Q01082 187 203 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.2983E-13 123.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 2 2 1 0.94371 0.91328 19.922 12 Median 1.181 1.1343 12.456 2 0 Median 1.2308 1.0296 21.992 3 0 Median 0.76463 0.83411 5.8614 2 0 Median 0.8821 0.7731 9.3619 2 0 Median 0.95461 0.96212 0.40487 2 0 Median 0.76836 0.65215 NaN 1 0 Median 76752000 36892000 39860000 16258000 8155700 8102500 6639000 2936200 3702900 46814000 22275000 24539000 2316200 1193000 1123200 4601200 2282500 2318800 123130 49238 73887 32351 2681 34013 169306;169307;169308;169309;169310;169311;169312;169313;169314;169315;169316;169317 170568;170569;170570;170571;170572;170573;170574;170575;170576;170577;170578;170579;170580 170572 13 TAGYPNVNVHNFTTSWR KKSAKDALLLWCQMKTAGYPNVNVHNFTTS GYPNVNVHNFTTSWRDGLAFNAIVHKHRPD K T A W R D 1 1 3 0 0 0 0 1 1 0 0 0 0 1 1 1 3 1 1 2 0 0 17 0 1962.9337 O15020;A4QPE4 O15020 190 206 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 3 0.00014249 41.554 By MS/MS By matching 1 1 1.1675 1.1398 6.4039 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0882 1.1926 NaN 1 0 Median 1.2526 1.0894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7818100 4086400 3731600 0 0 0 0 0 0 7631800 3995300 3636500 186240 91089 95148 0 0 0 0 0 0 32352 1512 34014 169318;169319 170581;170582 170582 2 TAHLDEEVNKGDILVVATGQPEMVK LLLWNNATVTTCHSKTAHLDEEVNKGDILV GDILVVATGQPEMVKGEWIKPGAIVIDCGI K T A V K G 2 0 1 2 0 1 3 2 1 1 2 2 1 0 1 0 2 0 0 4 0 0 25 1 2692.3742 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 199 223 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 3 0.011427 18.298 By MS/MS 1 0.89245 0.93602 NaN 1 Median 0.89245 0.93602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9004300 5072500 3931700 9004300 5072500 3931700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32353 1968 34015 169320 170583;170584 170583 2 TAHNSEADLEESFNEHELEPSSPK PSQGIYMVYCRKHKKTAHNSEADLEESFNE EESFNEHELEPSSPKSKKKSRKGRPRKTNF K T A P K S 2 0 2 1 0 0 6 0 2 0 2 1 0 1 2 4 1 0 0 0 0 0 24 0 2696.1838 Q8IWS0 Q8IWS0 134 157 PHF6 PHD finger protein 6 yes yes 3 5.0216E-05 32.72 By MS/MS 1 0.64728 0.66909 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64728 0.66909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10521000 5706900 4814400 0 0 0 0 0 0 10521000 5706900 4814400 0 0 0 0 0 0 0 0 0 32354 3327 34016 169321 170585 170585 1 TAHSLFK RFQSGDFHVINGVLRTAHSLFKRYRHEFKS HVINGVLRTAHSLFKRYRHEFKSNELWTEI R T A F K R 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 7 0 802.43374 P55060 P55060 152 158 CSE1L Exportin-2 yes yes 2 0.016244 69.176 By MS/MS By matching 2 1 1.2932 1.1229 4.6592 3 Plateau NaN NaN NaN 0 0 Median 1.2739 1.1229 3.8846 2 0 Median 0.99682 1.052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4195000 1801900 2393000 0 0 0 4085200 1741900 2343300 109790 60003 49785 0 0 0 0 0 0 0 0 0 32355 2493 34017 169322;169323;169324 170586;170587;170588;170589 170588 4 TAIEEVQAER LDTPLYFSYSHLVCRTAIEEVQAERKDDSH HLVCRTAIEEVQAERKDDSHPVHVDNCILN R T A E R K 2 1 0 0 0 1 3 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 10 0 1144.5724 Q32P28 Q32P28 570 579 LEPRE1 Prolyl 3-hydroxylase 1 yes yes 2 0.00033827 85.676 By MS/MS By MS/MS By MS/MS 1 1 1 1.0122 1.0087 19.959 3 Median NaN NaN NaN 0 0 Median 1.0122 0.87707 NaN 1 0 Median 0.94018 1.0087 NaN 1 0 Median 1.5094 1.3002 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8527600 3850700 4676900 0 0 0 3688800 1636800 2052000 3514300 1701000 1813300 1324500 512840 811680 0 0 0 0 0 0 32356 3007 34018 169325;169326;169327 170590;170591;170592;170593 170592 4 TAIHEVMEQGR VVCIDEFDKMSDMDRTAIHEVMEQGRVTIA DMDRTAIHEVMEQGRVTIAKAGIHARLNAR R T A G R V 1 1 0 0 0 1 2 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 11 0 1269.6136 P25205;J3KQ69;A0A499FHX9 P25205 420 430 MCM3 DNA replication licensing factor MCM3 yes no 2;3 3.0798E-05 128.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 5 2 2 1 0.99242 0.95417 15.196 21 Median 0.9724 0.93599 19.978 7 2 Median 1.1382 0.98581 13.993 5 0 Median 0.88726 0.94078 11.214 4 0 Median 1.0609 0.91424 9.4349 2 1 Median 1.027 1.0623 19.625 2 1 Median 1.1144 0.91616 NaN 1 1 Median 159130000 77428000 81703000 59482000 30459000 29024000 54494000 24418000 30076000 34242000 17316000 16926000 6387100 3172800 3214300 4000500 1827400 2173100 525730 235560 290170 32357 2129 34019 169328;169329;169330;169331;169332;169333;169334;169335;169336;169337;169338;169339;169340;169341;169342;169343;169344;169345;169346;169347;169348;169349 170594;170595;170596;170597;170598;170599;170600;170601;170602;170603;170604;170605;170606;170607;170608;170609;170610;170611;170612;170613;170614;170615;170616;170617;170618 170612 24 TAIHEVMEQQTISIAK VCCIDEFDKMAEADRTAIHEVMEQQTISIA AIHEVMEQQTISIAKAGILTTLNARCSILA R T A A K A 2 0 0 0 0 2 2 0 1 3 0 1 1 0 0 1 2 0 0 1 0 0 16 0 1797.9295 P33993 P33993 456 471 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 1.8513E-10 147.26 By MS/MS By MS/MS By MS/MS By matching 2 1 4 1 0.76082 0.74962 27.584 8 Median 0.89445 0.7938 2.4442 2 1 Median 1.2578 1.0987 NaN 1 0 Median 0.67565 0.67054 20.363 4 2 Median NaN NaN NaN 0 0 Median 0.45635 0.47191 NaN 1 0 Median NaN NaN NaN 0 0 Median 178790000 104080000 74708000 55132000 30768000 24364000 7043300 2712500 4330700 112500000 67973000 44523000 0 0 0 4117000 2627600 1489400 0 0 0 32358 2225 34020;34021 169350;169351;169352;169353;169354;169355;169356;169357 170619;170620;170621;170622;170623;170624;170625;170626 170621 965 8 TAILVGGMSTQK VKQHIDAVARFTGIKTAILVGGMSTQKQQR GIKTAILVGGMSTQKQQRMLNRRPEIVVAT K T A Q K Q 1 0 0 0 0 1 0 2 0 1 1 1 1 0 0 1 2 0 0 1 0 0 12 0 1204.6486 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 375 386 DDX24 ATP-dependent RNA helicase DDX24 yes no 2 0.00061547 67.726 By MS/MS 1 1.1781 1.3002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1781 1.3002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4476800 1886500 2590300 0 0 0 0 0 0 4476800 1886500 2590300 0 0 0 0 0 0 0 0 0 32359 1118 34022 169358 170627 170627 1 TAIPFTQEPQR LPNYCYNGSTNRFVRTAIPFTQEPQRDKPA RFVRTAIPFTQEPQRDKPANVQPYYLYGSK R T A Q R D 1 1 0 0 0 2 1 0 0 1 0 0 0 1 2 0 2 0 0 0 0 0 11 0 1286.6619 E7EVJ5;H7C229;E7EW33;Q96F07 E7EVJ5 840 850 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 2 0.00017515 78.934 By MS/MS 1 1.0091 0.859 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0091 0.859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2393400 1180400 1213100 0 0 0 0 0 0 0 0 0 2393400 1180400 1213100 0 0 0 0 0 0 32360 897 34023 169359 170628;170629 170629 2 TAITVEHLAIK STYEQVDLIGKKTQKTAITVEHLAIKCHWT KTQKTAITVEHLAIKCHWTQRAAVIGDVIR K T A I K C 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1194.6972 Q9NR30 Q9NR30 407 417 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.00013635 110.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 2 1 1.2544 1.1916 19.942 8 Median 1.0059 0.98082 NaN 1 0 Median 1.1766 1.029 NaN 1 0 Median 1.2563 1.3463 11.787 2 0 Median 1.4876 1.2825 33.319 2 0 Median 1.4965 1.5227 NaN 1 0 Median 1.3374 1.1463 NaN 1 0 Median 109520000 35362000 74154000 5213800 2484500 2729200 16227000 7732300 8495000 49382000 12640000 36742000 12096000 4254900 7840700 25436000 7817900 17618000 1161400 433050 728380 32361 4076 34024 169360;169361;169362;169363;169364;169365;169366;169367;169368;169369;169370 170630;170631;170632;170633;170634;170635;170636;170637;170638;170639;170640 170638 11 TALAATNPAVR GFSGLNVKAFISNVKTALAATNPAVRTAAI SNVKTALAATNPAVRTAAITLLGVMYLYVG K T A V R T 4 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 1 0 0 11 0 1083.6037 Q14008 Q14008 762 772 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00011244 124.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 3 0.96357 0.84999 17.044 9 Median NaN NaN NaN 0 0 Median 1.1653 0.97833 NaN 1 1 Median 0.97597 1.0694 2.1798 2 0 Median 0.96357 0.84999 16.832 3 0 Median NaN NaN NaN 0 0 Median 0.92255 0.7501 7.7012 3 2 Median 47955000 24345000 23610000 0 0 0 1786000 948090 837940 18153000 9008800 9143700 11047000 5579100 5467800 0 0 0 16970000 8809200 8160400 32362 2850 34025 169371;169372;169373;169374;169375;169376;169377;169378;169379;169380 170641;170642;170643;170644;170645;170646;170647;170648;170649;170650;170651;170652;170653;170654 170648 13 TALAEAELEYNPEHVSR VYRSYKPVFWSPSSRTALAEAELEYNPEHV LAEAELEYNPEHVSRSIYVKFPLLKPSPKL R T A S R S 3 1 1 0 0 0 4 0 1 0 2 0 0 0 1 1 1 0 1 1 0 0 17 0 1927.9276 Q9NSE4 Q9NSE4 251 267 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 6.9547E-12 97.953 By MS/MS 2 0.77227 0.74526 16.096 2 Median 0.77227 0.74526 16.096 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15692000 9394900 6297100 15692000 9394900 6297100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32363 4103 34026 169381;169382 170655;170656 170656 2 TALALAIAQELGSK AGRAVLLAGPPGTGKTALALAIAQELGSKV KTALALAIAQELGSKVPFCPMVGSEVYSTE K T A S K V 4 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1384.7926 Q9Y265;E7ETR0 Q9Y265 77 90 RUVBL1 RuvB-like 1 yes no 2 7.8822E-09 162.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 4 1.1893 1.0777 8.3907 13 Median 1.2201 1.1447 8.5271 2 0 Median 1.1516 0.99093 11.179 2 0 Median 1.0755 1.0361 2.4948 2 0 Median 1.2822 1.127 2.0086 2 0 Median 1.1582 1.1473 1.462 2 0 Median 1.2848 1.0514 11.636 3 1 Median 125340000 56864000 68473000 13210000 6108700 7101700 24231000 10531000 13700000 55519000 25879000 29640000 897020 392370 504640 15516000 7043100 8473300 15964000 6909200 9054500 32364 4375 34027 169383;169384;169385;169386;169387;169388;169389;169390;169391;169392;169393;169394;169395;169396 170657;170658;170659;170660;170661;170662;170663;170664;170665;170666;170667;170668;170669;170670;170671;170672;170673;170674;170675 170660 19 TALALEVGDIVK FAKAIQKRVPCAYDKTALALEVGDIVKVTR YDKTALALEVGDIVKVTRMNINGQWEGEVN K T A V K V 2 0 0 1 0 0 1 1 0 1 2 1 0 0 0 0 1 0 0 2 0 0 12 0 1227.7075 P46109 P46109 254 265 CRKL Crk-like protein yes yes 2 0.042067 61.65 By MS/MS 2 1.7293 1.6264 61.337 2 Median 1.7293 1.6264 61.337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4562100 2227200 2334900 4562100 2227200 2334900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32365 2341 34028 169397;169398 170676 170676 0 TALALEVGELVK YARVIQKRVPNAYDKTALALEVGELVKVTK YDKTALALEVGELVKVTKINVSGQWEGECN K T A V K V 2 0 0 0 0 0 2 1 0 0 3 1 0 0 0 0 1 0 0 2 0 0 12 0 1241.7231 P46108 P46108 254 265 CRK Adapter molecule crk yes yes 2 0.001303 54.608 By MS/MS 1 0.97526 0.81834 NaN 1 Median NaN NaN NaN 0 0 Median 0.97526 0.81834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18469000 8611000 9857700 0 0 0 18469000 8611000 9857700 0 0 0 0 0 0 0 0 0 0 0 0 32366 2340 34029 169399 170677 170677 1 TALAMGADR IAVSCGPAQCQETIRTALAMGADRGIHVEV CQETIRTALAMGADRGIHVEVPPAEAERLG R T A D R G 3 1 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 9 0 904.44365 P38117 P38117 77 85 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.0016231 79.474 By MS/MS By MS/MS By MS/MS 2 1 1 1.0635 1.0273 23.476 4 Median 1.0463 1.0052 14.453 2 0 Median 1.7985 1.5235 NaN 1 0 Median 0.98801 0.94796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25184000 11895000 13289000 16167000 8056300 8110600 2905700 1105800 1799900 6111100 2733100 3378000 0 0 0 0 0 0 0 0 0 32367 2272 34030 169400;169401;169402;169403 170678;170679;170680;170681;170682 170681 5 TALAQIFR ASEQVPVRGDPAVGKTALAQIFRSDGAHFQ GDPAVGKTALAQIFRSDGAHFQKSYTLTTG K T A F R S 2 1 0 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 8 0 918.5287 F5GZ09;Q9BW83;B1AH58 F5GZ09 58 65 IFT27 Intraflagellar transport protein 27 homolog yes no 2 0.0025057 122.79 By MS/MS 1 1.3138 1.2718 NaN 1 Median 1.3138 1.2718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13420000 5846700 7573000 13420000 5846700 7573000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32368 1013 34031 169404 170683;170684 170683 2 TALASGGVLDASGDYR PPSPRSVDQVKAQLRTALASGGVLDASGDY ALASGGVLDASGDYRVYRGLLKTTMDPNDV R T A Y R V 3 1 0 2 0 0 0 3 0 0 2 0 0 0 0 2 1 0 1 1 0 0 16 0 1551.7529 O43505 O43505 65 80 B4GAT1 Beta-1,4-glucuronyltransferase 1 yes yes 2 4.8589E-10 106.01 By MS/MS By matching 1 1 1.3579 1.2584 5.5336 2 Median 1.2331 1.2101 NaN 1 0 Median 1.4954 1.3086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765200 2579400 3185800 5074700 2283000 2791700 690460 296420 394040 0 0 0 0 0 0 0 0 0 0 0 0 32369 1574 34032 169405;169406 170685;170686 170686 2 TALDAFGR VANYDSVEEGEKVVKTALDAFGRIDVVVNN EGEKVVKTALDAFGRIDVVVNNAGILRDRS K T A G R I 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 849.43447 A0A2R8YD50;P51659;E7EWE5;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 85 92 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 0.0029873 102.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1.2679 1.1647 21.219 8 Median 1.0692 1.0201 17.27 2 0 Median 1.4597 1.2475 8.2251 2 0 Median 0.823 0.81271 NaN 1 0 Median 1.5233 1.2703 25.29 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24725000 11638000 13087000 12787000 6472600 6314800 4901400 2160400 2741000 3302900 1664400 1638500 3733300 1340500 2392800 0 0 0 0 0 0 32370 393 34033 169407;169408;169409;169410;169411;169412;169413;169414 170687;170688;170689;170690;170691;170692;170693;170694;170695;170696;170697;170698 170689 12 TALEMVQAAGTDR KISGLKTSMAEGERKTALEMVQAAGTDRHC RKTALEMVQAAGTDRHCVTFVLHEEDHTLG K T A D R H 3 1 0 1 0 1 1 1 0 0 1 0 1 0 0 0 2 0 0 1 0 0 13 0 1361.6609 P0DPB6;A0A0R4J2F3 P0DPB6 25 37 yes no 2 1.3713E-06 162.38 By MS/MS By MS/MS By MS/MS 1 2 1 1.0055 0.95526 16.398 4 Median NaN NaN NaN 0 0 Median 0.96268 0.81673 NaN 1 0 Median 0.9443 0.95526 15.049 2 0 Median 1.4436 1.1476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29434000 14913000 14522000 0 0 0 5547800 2760100 2787700 23446000 11956000 11490000 440480 196210 244270 0 0 0 0 0 0 32371 1932 34034;34035 169415;169416;169417;169418 170699;170700;170701;170702;170703;170704;170705 170704 715 7 TALFEEISR QGAVESIAMKNPKERTALFEEISRSGELAQ KNPKERTALFEEISRSGELAQEYDKRKKEM R T A S R S 1 1 0 0 0 0 2 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1064.5502 Q14683;G8JLG1;H0Y7K8 Q14683 152 160 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 9.5967E-05 147.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 4 4 1.1538 1.0102 15.554 14 Median 1.1483 1.0778 NaN 1 0 Median 1.2287 1.0364 NaN 1 0 Median 0.71315 0.77275 34.403 2 0 Median 1.2613 1.1019 5.9952 2 0 Median 0.95281 0.96837 10.251 4 2 Median 1.1992 1.0102 3.7153 4 0 Median 165890000 82689000 83202000 11911000 5055400 6855900 5253700 2255700 2997900 49859000 26377000 23482000 4833500 2132900 2700600 83967000 42336000 41631000 10066000 4531700 5534400 32372 2889 34036 169419;169420;169421;169422;169423;169424;169425;169426;169427;169428;169429;169430;169431;169432 170706;170707;170708;170709;170710;170711;170712;170713;170714;170715;170716 170708 11 TALHGESNSVLIIGPR GVQVQYKHLSELLKRTALHGESNSVLIIGP ALHGESNSVLIIGPRGSGKTMLINHALKEL R T A P R G 1 1 1 0 0 0 1 2 1 2 2 0 0 0 1 2 1 0 0 1 0 0 16 0 1662.9053 O43929;C9JGH7;C9J2X8;Q53SE3 O43929 54 69 ORC4;ORC4L Origin recognition complex subunit 4 yes no 3 7.0434E-09 127.71 By MS/MS By MS/MS 2 1 0.87949 0.83467 6.3258 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82176 0.84793 2.228 2 1 Median 0.88551 0.76256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42627000 22984000 19643000 0 0 0 0 0 0 29173000 16185000 12988000 13454000 6799300 6655100 0 0 0 0 0 0 32373 1602 34037 169433;169434;169435 170717;170718;170719;170720;170721 170721 5 TALIHDGLAR GGVMDVNTALQEVLKTALIHDGLARGIREA QEVLKTALIHDGLARGIREAAKALDKRQAH K T A A R G 2 1 0 1 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1065.5931 P25398 P25398 24 33 RPS12 40S ribosomal protein S12 yes yes 2 0.00022687 128.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 4 3 2 3 1 1.161 1.0133 16.82 19 Median 1.0588 1.0099 8.4393 6 0 Median 1.2093 1.0363 7.6364 4 0 Linear 1.2282 1.2389 25.481 3 0 Median 1.266 0.99375 2.9116 2 0 Median 1.2321 1.3821 5.8136 3 0 Plateau 0.97062 0.75613 NaN 1 0 Median 1204100000 560210000 643880000 332320000 161460000 170870000 757310000 346620000 410680000 68059000 31665000 36394000 23999000 10341000 13657000 21813000 9873200 11940000 588330 249820 338520 32374 2132 34038 169436;169437;169438;169439;169440;169441;169442;169443;169444;169445;169446;169447;169448;169449;169450;169451;169452;169453;169454 170722;170723;170724;170725;170726;170727;170728;170729;170730;170731;170732;170733;170734;170735;170736;170737;170738;170739;170740;170741;170742;170743;170744;170745;170746;170747;170748;170749;170750;170751;170752;170753;170754;170755;170756 170753 35 TALINSTGEEVAMR VWKAQNTWGCGNSLRTALINSTGEEVAMRK RTALINSTGEEVAMRKLVRSVTVVEDDEDE R T A M R K 2 1 1 0 0 0 2 1 0 1 1 0 1 0 0 1 2 0 0 1 0 0 14 0 1490.7399 P02545;Q3BDU5 P02545 528 541 LMNA Prelamin-A/C;Lamin-A/C no no 2 1.3344E-23 199.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 8 12 14 10 1.1386 1.0957 18.436 46 Median NaN NaN NaN 0 0 Median 1.3876 1.1782 78.799 2 0 Median 1.1137 1.094 13.24 8 1 Median 1.3347 1.1219 22.282 12 2 Median 1.0718 1.0855 8.6963 14 2 Median 1.4016 1.0918 10.442 10 0 Median 1513100000 688610000 824510000 0 0 0 1467000 676650 790350 547840000 250200000 297640000 149360000 60474000 88890000 685090000 323260000 361830000 129350000 54002000 75353000 32375 1834;3010 34039;34040 169455;169456;169457;169458;169459;169460;169461;169462;169463;169464;169465;169466;169467;169468;169469;169470;169471;169472;169473;169474;169475;169476;169477;169478;169479;169480;169481;169482;169483;169484;169485;169486;169487;169488;169489;169490;169491;169492;169493;169494;169495;169496;169497;169498;169499;169500 170757;170758;170759;170760;170761;170762;170763;170764;170765;170766;170767;170768;170769;170770;170771;170772;170773;170774;170775;170776;170777;170778;170779;170780;170781;170782;170783;170784;170785;170786;170787;170788;170789;170790;170791;170792;170793;170794;170795;170796;170797;170798;170799;170800;170801;170802;170803;170804;170805;170806;170807;170808;170809;170810;170811;170812;170813;170814;170815;170816;170817;170818;170819;170820;170821;170822;170823;170824 170787 599 68 TALINSTGEEVAMRK VWKAQNTWGCGNSLRTALINSTGEEVAMRK TALINSTGEEVAMRKLVRSVTVVEDDEDED R T A R K L 2 1 1 0 0 0 2 1 0 1 1 1 1 0 0 1 2 0 0 1 0 0 15 1 1618.8349 P02545;Q3BDU5 P02545 528 542 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 3.9528E-14 127.42 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 12 2 1.1175 1.2073 30.734 20 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0648 1.1308 3.9291 2 0 Median 1.2128 1.112 53.55 4 1 Median 1.1154 1.2094 22.675 12 3 Median 1.5834 1.407 3.1214 2 0 Median 133150000 61442000 71709000 0 0 0 0 0 0 18735000 8326900 10408000 13485000 4806900 8678500 96227000 46493000 49734000 4703000 1815400 2887600 32376 1834;3010 34041;34042 169501;169502;169503;169504;169505;169506;169507;169508;169509;169510;169511;169512;169513;169514;169515;169516;169517;169518;169519;169520;169521 170825;170826;170827;170828;170829;170830;170831;170832;170833;170834;170835;170836;170837;170838;170839;170840;170841;170842;170843 170836 599 19 TALKDPGAVDLEK YKIQSFDAETQQLLKTALKDPGAVDLEKVA LKTALKDPGAVDLEKVANVIVDHSLQDCVF K T A E K V 2 0 0 2 0 0 1 1 0 0 2 2 0 0 1 0 1 0 0 1 0 0 13 1 1355.7296 J3QLD1;J3KSB8;J3QRZ6;J3QLJ5;A9UHW6 J3QLD1 24 36 MIF4GD MIF4G domain-containing protein yes no 2 0.0017192 75.566 By MS/MS By matching 1 1 0.86487 0.8201 19.917 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71266 0.71236 NaN 1 0 Median 1.0496 0.94413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4590000 2237100 2352800 0 0 0 0 0 0 3579400 1843600 1735800 1010500 393540 617000 0 0 0 0 0 0 32377 552 34043 169522;169523 170844 170844 1 TALLPSDSVFAEER NSDLEKKGAEIINPKTALLPSDSVFAEERN KTALLPSDSVFAEERNLKGILEESPSEAED K T A E R N 2 1 0 1 0 0 2 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 14 0 1533.7675 Q14966 Q14966 1221 1234 ZNF638 Zinc finger protein 638 yes yes 2 6.5451E-08 101.93 By MS/MS By MS/MS By MS/MS By matching 3 2 1 2 1.0605 0.92684 8.1843 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83004 0.90774 1.6706 2 1 Median 1.1923 1.0485 10.098 2 0 Median 0.90206 0.92684 NaN 1 0 Median 1.0917 0.90789 3.7275 2 0 Median 38312000 20126000 18187000 0 0 0 0 0 0 25298000 13619000 11680000 1054700 478710 576030 11074000 5615700 5458100 885230 412530 472710 32378 2903 34044 169524;169525;169526;169527;169528;169529;169530;169531 170845;170846;170847;170848;170849;170850;170851 170850 7 TALLSLFGIPLWYHSQSPR ASVISTRCSETYETKTALLSLFGIPLWYHS SLFGIPLWYHSQSPRVILQPDVHPGNCWAF K T A P R V 1 1 0 0 0 1 0 1 1 1 4 0 0 1 2 3 1 1 1 0 0 0 19 0 2185.1684 Q9UH99;B0QY60 Q9UH99 571 589 SUN2 SUN domain-containing protein 2 yes no 3 0.021114 15.254 By MS/MS 1 0.57785 0.61252 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57785 0.61252 NaN 1 0 Median NaN NaN NaN 0 0 Median 653230 467260 185970 0 0 0 0 0 0 0 0 0 0 0 0 653230 467260 185970 0 0 0 32379 4271 34045 169532 170852 170852 1 TALNLFFK THSNLQPVHMILVLRTALNLFFKLKNFKTA HMILVLRTALNLFFKLKNFKTAATFARRLL R T A F K L 1 0 1 0 0 0 0 0 0 0 2 1 0 2 0 0 1 0 0 0 0 0 8 0 952.5382 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1107 1114 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0094539 60.788 By MS/MS By matching By matching By matching By matching 4 3 1 1 2 1.1651 1.1186 28.979 11 Median 1.1282 1.122 42.101 4 0 Median 1.2314 1.0588 8.6807 3 0 Median 1.3146 1.4013 NaN 1 0 Median 1.3744 1.1977 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.022 0.87534 14.32 2 0 Median 17415000 8080500 9334100 11423000 5474700 5948500 4884800 2093900 2791000 729550 334750 394790 158230 71403 86828 0 0 0 218760 105810 112950 32380 2473 34046 169533;169534;169535;169536;169537;169538;169539;169540;169541;169542;169543 170853;170854 170854 2 TALNNTLDLSNVR TVNLVDAWEPYKAAKTALNNTLDLSNVREQ AKTALNNTLDLSNVREQASRYATVSERVHA K T A V R E 1 1 3 1 0 0 0 0 0 0 3 0 0 0 0 1 2 0 0 1 0 0 13 0 1429.7525 Q12768;E7EQI7 Q12768 312 324 KIAA0196 WASH complex subunit strumpellin yes no 2 7.2837E-05 128.17 By MS/MS By MS/MS 1 1 0.84936 0.87424 4.0636 2 Median 0.93106 0.89973 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77483 0.84948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8831000 4759000 4072100 6309000 3069500 3239400 0 0 0 2522100 1689400 832660 0 0 0 0 0 0 0 0 0 32381 878 34047 169544;169545 170855;170856 170855 1 TALPAQSAATLPAR ESSPIPSPTSDRKAKTALPAQSAATLPART KTALPAQSAATLPARTQETPSAQMEGFLNR K T A A R T 5 1 0 0 0 1 0 0 0 0 2 0 0 0 2 1 2 0 0 0 0 0 14 0 1366.7569 Q01082;A0A087WUZ3 Q01082 2178 2191 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 4.966E-11 173.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 6 2 3 0.79396 0.76198 15.287 19 Median 0.87147 0.81778 4.2174 3 0 Plateau 0.95532 0.76198 19.428 3 0 Plateau 0.59448 0.64856 4.121 2 0 Median 0.89867 0.76838 16.165 6 0 Median 0.75304 0.80985 14.791 2 0 Median 0.74673 0.61897 2.4755 3 0 Median 450670000 253520000 197140000 30672000 16535000 14137000 92744000 46248000 46496000 246190000 146290000 99897000 39917000 21821000 18096000 25233000 13628000 11605000 15915000 9001700 6912900 32382 2681 34048 169546;169547;169548;169549;169550;169551;169552;169553;169554;169555;169556;169557;169558;169559;169560;169561;169562;169563;169564 170857;170858;170859;170860;170861;170862;170863;170864;170865;170866;170867;170868;170869;170870;170871;170872;170873;170874;170875;170876 170862 20 TALPTSGSSAGELELLAGEVPAR FDTEPDEFSDFDRLRTALPTSGSSAGELEL SAGELELLAGEVPARSPGAFDMSGVRGSLA R T A A R S 4 1 0 0 0 0 3 3 0 0 4 0 0 0 2 3 2 0 0 1 0 0 23 0 2225.1539 Q9Y6I3 Q9Y6I3 412 434 EPN1 Epsin-1 yes yes 2 0.013063 31.827 By MS/MS 1 0.63618 0.63053 NaN 1 Median 0.63618 0.63053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1593100 886620 706470 1593100 886620 706470 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32383 4493 34049 169565 170877 170877 1 TALQEEIK ASNQREEYLLLRLFKTALQEEIKSKVDQIQ LLLRLFKTALQEEIKSKVDQIQEIVTGNPT K T A I K S 1 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 930.50221 P46940;A0A0J9YXZ5;H0YLE8;F2Z2E2;Q86VI3 P46940 1028 1035 IQGAP1;IQGAP3 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP3 no no 2 0.0023123 109.86 By MS/MS By MS/MS 3 1 1.1209 1.0666 4.1021 4 Median 1.1266 1.0825 1.4899 3 2 Plateau 1.1185 0.99108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23379000 10602000 12777000 12676000 5756700 6919100 10703000 4845400 5857700 0 0 0 0 0 0 0 0 0 0 0 0 32384 2350;989 34050 169566;169567;169568;169569 170878;170879;170880;170881 170881 4 TALSAVDMTQR VHPGASMVINEDGSRTALSAVDMTQREAVA DGSRTALSAVDMTQREAVAKQLLTPATGAP R T A Q R E 2 1 0 1 0 1 0 0 0 0 1 0 1 0 0 1 2 0 0 1 0 0 11 0 1191.5918 O95602;B9ZVN9 O95602 505 515 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.00014769 116.3 By MS/MS By MS/MS By matching 2 1 1 0.96813 0.92873 18.341 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0029 1.0979 8.2181 2 0 Median 0.94749 0.8326 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9862 0.78771 NaN 1 0 Median 40795000 20114000 20681000 0 0 0 0 0 0 37648000 18646000 19002000 2812200 1317700 1494500 0 0 0 334390 149570 184820 32385 1781 34051;34052 169570;169571;169572;169573 170882;170883;170884;170885;170886 170884 570 5 TALTTTISSR GIITELGVFAPEELRTALTTTISSRDGTLD PEELRTALTTTISSRDGTLDGPQM______ R T A S R D 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 2 4 0 0 0 0 0 10 0 1049.5717 Q9BV20 Q9BV20 351 360 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.00037664 98.033 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.85326 0.79538 46.836 4 Median 0.87882 0.87706 NaN 1 0 Median 0.82844 0.72132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7728 1.9023 NaN 1 0 Median 0.82842 0.69913 NaN 1 0 Median 24291000 12163000 12128000 15098000 7749800 7348000 5932800 2977000 2955800 0 0 0 0 0 0 1766800 566460 1200300 1493200 869460 623790 32386 3844 34053 169574;169575;169576;169577 170887;170888;170889;170890 170890 4 TALTYYLDITNPPR ESNKKHPFPCPTSYRTALTYYLDITNPPRT RTALTYYLDITNPPRTNVLYELAQYASEPS R T A P R T 1 1 1 1 0 0 0 0 0 1 2 0 0 0 2 0 3 0 2 0 0 0 14 0 1636.8461 P16435;H0Y4R2;E7EMD0 P16435 369 382 POR NADPH--cytochrome P450 reductase yes no 2 0.00041385 70.977 By MS/MS By matching 1 2 1.079 0.97151 37.105 3 Median 0.80761 0.80086 NaN 1 0 Median 1.4197 1.2625 37.048 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3147100 1584900 1562200 1496300 842580 653680 1650800 742330 908500 0 0 0 0 0 0 0 0 0 0 0 0 32387 2030 34054 169578;169579;169580 170891 170891 1 TALVANTSNMPVAAR LTMEVDGKVESIMKRTALVANTSNMPVAAR TALVANTSNMPVAAREASIYTGITLSEYFR R T A A R E 4 1 2 0 0 0 0 0 0 0 1 0 1 0 1 1 2 0 0 2 0 0 15 0 1514.7875 P38606 P38606 309 323 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 5.8678E-15 180.97 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 1 1.1241 0.9838 38.125 12 Median 0.9164 0.87477 40.977 4 0 Median 1.2794 1.1163 35.823 4 0 Median 1.2557 1.3018 36.125 2 0 Median 1.1614 0.97035 NaN 1 0 Median 0.55358 0.5963 NaN 1 0 Median NaN NaN NaN 0 0 Median 167850000 79913000 87938000 105700000 50072000 55625000 33366000 15102000 18264000 24294000 12478000 11816000 2294100 915610 1378500 2199800 1346000 853820 0 0 0 32388 2276 34055;34056 169581;169582;169583;169584;169585;169586;169587;169588;169589;169590;169591;169592 170892;170893;170894;170895;170896;170897;170898;170899;170900;170901;170902;170903;170904 170898 1028 13 TALVERDDFSSGTSSR TGSGCALDAVTRGLKTALVERDDFSSGTSS ALVERDDFSSGTSSRSTKLIHGGVRYLQKA K T A S R S 1 2 0 2 0 0 1 1 0 0 1 0 0 1 0 4 2 0 0 1 0 0 16 1 1726.8122 P43304;F5GYK7 P43304 95 110 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial;Glycerol-3-phosphate dehydrogenase yes no 3 0.0020856 31.42 By MS/MS 2 0.90382 0.9084 17.03 2 Median 0.90382 0.9084 17.03 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8688100 4695400 3992700 8688100 4695400 3992700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32389 2325 34057 169593;169594 170905 170905 1 TALYVTPLDR ERFVVTAPPARNRSKTALYVTPLDRVTEFG RNRSKTALYVTPLDRVTEFGGELHEDGGKL K T A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1147.6237 Q9UFW8;C9JUJ0 Q9UFW8 17 26 CGGBP1 CGG triplet repeat-binding protein 1 yes no 2 0.00038123 90.657 By MS/MS By MS/MS By MS/MS 1 2 2 0.84503 0.81108 11.465 5 Median 0.7897 0.77946 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85241 0.84056 5.0497 2 1 Median 0.90617 0.73257 17.631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104910000 55271000 49638000 5523200 2954800 2568500 0 0 0 77425000 40630000 36796000 21961000 11687000 10273000 0 0 0 0 0 0 32390 4260 34058 169595;169596;169597;169598;169599 170906;170907;170908;170909;170910;170911;170912;170913 170908 8 TAMELQR RNSPQFRFDWFLKSRTAMELQRRCNTLITL FDWFLKSRTAMELQRRCNTLITLIERENME R T A Q R R 1 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 7 0 847.42219 O60264 O60264 993 999 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.020057 60.788 By MS/MS By matching By MS/MS 1 1 1 1.3179 1.1868 9.6232 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1973 1.3067 NaN 1 0 Median 1.3851 1.1868 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3179 1.078 NaN 1 0 Median 3426100 1595700 1830400 0 0 0 0 0 0 1951300 995630 955690 650500 259870 390620 0 0 0 824300 340250 484060 32391 1608 34059 169600;169601;169602 170914;170915;170916 170914 3 TAMEVEAPSKPAR RRKLLQQIRLAQKEKTAMEVEAPSKPARTS EKTAMEVEAPSKPARTSEPQLKRQKKTKAP K T A A R T 3 1 0 0 0 0 2 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 13 1 1385.6973 E9PRG8 E9PRG8 84 96 C11orf98 Uncharacterized protein C11orf98 yes yes 3 0.0045613 33.968 By MS/MS By MS/MS 1 1 0.74881 0.70053 17.901 2 Median 0.6219 0.61724 NaN 1 0 Median 0.90163 0.79506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1729300 994580 734700 1170800 710950 459830 558500 283620 274870 0 0 0 0 0 0 0 0 0 0 0 0 32392 984 34060 169603;169604 170917;170918;170919;170920 170919 4 TAMNVNDLFLAIAK YADDNSLLFMETSAKTAMNVNDLFLAIAKK KTAMNVNDLFLAIAKKLPKSEPQNLGGAAG K T A A K K 3 0 2 1 0 0 0 0 0 1 2 1 1 1 0 0 1 0 0 1 0 0 14 0 1519.8068 P61020 P61020 166 179 RAB5B Ras-related protein Rab-5B yes yes 2 8.9647E-05 84.658 By MS/MS By matching By matching By matching 2 1 1 1 0.9334 0.94138 99.266 5 Median 1.0946 1.0203 22.468 2 0 Median NaN NaN NaN 0 0 Median 0.8964 0.94138 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0431 1.0626 NaN 1 0 Median 0.13627 0.11157 NaN 1 0 Median 26170000 13144000 13026000 22744000 11108000 11636000 0 0 0 459390 242800 216600 0 0 0 2141900 1039800 1102100 824560 752800 71750 32393 2538 34061;34062 169605;169606;169607;169608;169609 170921;170922;170923;170924 170921 1217 4 TAMNVNEIFMAIAK YADDNSLLFMETSAKTAMNVNEIFMAIAKK KTAMNVNEIFMAIAKKLPKNEPQNATGAPG K T A A K K 3 0 2 0 0 0 1 0 0 2 0 1 2 1 0 0 1 0 0 1 0 0 14 0 1551.7789 P51148 P51148 167 180 RAB5C Ras-related protein Rab-5C yes yes 2 0.00070644 63.283 By MS/MS By matching By matching By matching By matching By MS/MS 3 3 1 2 1 1 1.371 1.1764 36.531 11 Median 1.2335 1.1512 56.294 3 0 Median 1.371 1.1633 19.72 3 0 Median 1.3282 1.2386 NaN 1 0 Median 1.4862 1.1933 2.014 2 0 Median 2.2637 2.3217 NaN 1 0 Median 1.3264 1.1161 NaN 1 0 Median 54459000 23595000 30864000 47815000 20876000 26940000 2872000 1232500 1639500 661400 238620 422780 221940 95630 126310 1479700 594480 885240 1409000 557890 851080 32394 2427 34063;34064 169610;169611;169612;169613;169614;169615;169616;169617;169618;169619;169620 170925;170926;170927;170928;170929 170929 1134 5 TAMSTPHVAEPAENEQDEQDENGAEASADLR QMVQEDLEKTRAELKTAMSTPHVAEPAENE DEQDENGAEASADLRADAMAKDRSEEERTT K T A L R A 6 1 2 3 0 2 6 1 1 0 1 0 1 0 2 2 2 0 0 1 0 0 31 0 3311.412 P26038 P26038 465 495 MSN Moesin yes yes 3 7.4114E-43 106.81 By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 0.70183 0.61842 13.937 7 Median 0.58777 0.55675 0.91151 2 0 Median 0.70819 0.6194 0.22262 2 0 Median 0.63835 0.64055 NaN 1 0 Median 0.84347 0.71778 22.588 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102870000 55396000 47472000 28208000 16353000 11855000 8156800 4232900 3923900 52395000 27079000 25316000 14108000 7730800 6377300 0 0 0 0 0 0 32395 2139 34065 169621;169622;169623;169624;169625;169626;169627 170930;170931;170932;170933;170934;170935;170936;170937 170930 8 TANDMIHAENMR ALTSELANARDESKKTANDMIHAENMRLGR SKKTANDMIHAENMRLGRDKYKTLRQIRQG K T A M R L 2 1 2 1 0 0 1 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 12 0 1401.6129 P26038 P26038 539 550 MSN Moesin yes yes 2;3 5.401E-06 120.06 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 5 1.1132 1.0358 10.919 13 Median 1.0869 1.0358 4.5366 3 1 Median 1.1922 1.0307 6.0729 3 0 Plateau 1.0804 1.1096 7.015 2 0 Median 1.1326 0.94651 16.526 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77732000 35587000 42146000 19706000 9474400 10231000 25256000 11855000 13400000 25306000 10990000 14316000 7464600 3266400 4198200 0 0 0 0 0 0 32396 2139 34066 169628;169629;169630;169631;169632;169633;169634;169635;169636;169637;169638;169639;169640 170938;170939;170940;170941;170942;170943;170944;170945;170946;170947;170948;170949;170950;170951;170952;170953 170947 16 TANEGGSLLYEQLGYK FVSIFSLYSVHLLLKTANEGGSLLYEQLGY ANEGGSLLYEQLGYKAFGLVGKLAASGSIT K T A Y K A 1 0 1 0 0 1 2 3 0 0 3 1 0 0 0 1 1 0 2 0 0 0 16 0 1741.8523 Q96QD8 Q96QD8 125 140 SLC38A2 Sodium-coupled neutral amino acid transporter 2 yes yes 2 3.4176E-10 108.37 By MS/MS 2 1.0245 1.0246 1.5119 2 Median 1.0245 1.0246 1.5119 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15894000 7927700 7966700 15894000 7927700 7966700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32397 3719 34067 169641;169642 170954;170955 170955 2 TANFVAVDTELSGLGDR NNFKEMWPSLLLAIKTANFVAVDTELSGLG NFVAVDTELSGLGDRKSLLNQCIEERYKAV K T A D R K 2 1 1 2 0 0 1 2 0 0 2 0 0 1 0 1 2 0 0 2 0 0 17 0 1763.869 Q96GM8 Q96GM8 57 73 TOE1 Target of EGR1 protein 1 yes yes 2 3.9886E-05 50.675 By MS/MS By matching 1 1 1.182 1.1372 2.2319 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1015 1.1553 NaN 1 0 Median 1.2684 1.1194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2936100 1331600 1604500 0 0 0 0 0 0 2785700 1287200 1498500 150380 44378 106010 0 0 0 0 0 0 32398 3660 34068 169643;169644 170956;170957 170956 2 TANFVAVDTELSGLGDRK NNFKEMWPSLLLAIKTANFVAVDTELSGLG FVAVDTELSGLGDRKSLLNQCIEERYKAVC K T A R K S 2 1 1 2 0 0 1 2 0 0 2 1 0 1 0 1 2 0 0 2 0 0 18 1 1891.964 Q96GM8 Q96GM8 57 74 TOE1 Target of EGR1 protein 1 yes yes 3 0.0088677 22.313 By matching By MS/MS By matching 1 1 1 1.0898 3.3823 127.82 3 Plateau 9.1597 9.9162 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.035 1.1537 NaN 1 0 Median 1.0898 1.0226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16731000 2745300 13986000 14019000 1524800 12494000 0 0 0 2582600 1174100 1408400 129510 46381 83130 0 0 0 0 0 0 32399 3660 34069 169645;169646;169647 170958 170958 1 TANKDHLVTAYNHLFETK LAEHKLLGNIKNVAKTANKDHLVTAYNHLF KDHLVTAYNHLFETKRFKGTESISKVSEQV K T A T K R 2 0 2 1 0 0 1 0 2 0 2 2 0 1 0 0 3 0 1 1 0 0 18 1 2101.0593 Q00688 Q00688 53 70 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3;4 4.0171E-08 88.264 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 1 0.97599 0.9188 9.6264 10 Median 0.92603 0.91833 10.423 4 0 Median 1.0108 0.92446 6.0738 2 2 Median 0.90294 0.89891 14.781 3 1 Median 1.0421 0.93914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151630000 78377000 73256000 100940000 55048000 45891000 7719100 3571800 4147300 32990000 14855000 18135000 9984300 4902400 5081900 0 0 0 0 0 0 32400 2677 34070 169648;169649;169650;169651;169652;169653;169654;169655;169656;169657 170959;170960;170961;170962;170963;170964;170965;170966;170967;170968;170969 170961 11 TANKDHLVTAYNHLFETKR LAEHKLLGNIKNVAKTANKDHLVTAYNHLF DHLVTAYNHLFETKRFKGTESISKVSEQVK K T A K R F 2 1 2 1 0 0 1 0 2 0 2 2 0 1 0 0 3 0 1 1 0 0 19 2 2257.1604 Q00688 Q00688 53 71 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3;4;5 3.681E-08 65.521 By MS/MS By MS/MS By matching By MS/MS 4 1 1 1 1.0912 1.0539 8.709 7 Median 0.99159 1.0271 8.2229 4 0 Median 1.2961 1.1237 NaN 1 0 Median 1.0912 1.2217 NaN 1 0 Median 1.2123 1 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85412000 40857000 44555000 70705000 34485000 36219000 9871500 4063500 5808100 3028400 1537400 1491000 1807100 770600 1036500 0 0 0 0 0 0 32401 2677 34071 169658;169659;169660;169661;169662;169663;169664 170970;170971;170972;170973;170974;170975;170976 170972 7 TANLAEANASEEDKIK IDDSSASISLAQLTKTANLAEANASEEDKI ANLAEANASEEDKIKAMMSQSGHEYDPINY K T A I K A 4 0 2 1 0 0 3 0 0 1 1 2 0 0 0 1 1 0 0 0 0 0 16 1 1702.8374 Q7Z6E9;A0A2R8Y880;H3BUN0;I3L3Y2 Q7Z6E9 117 132 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 3.0454E-05 72.446 By MS/MS By matching 1 1 1.4891 1.5502 20.376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1587 1.3422 NaN 1 0 Median 1.9136 1.7904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15160000 6464000 8695900 0 0 0 0 0 0 13759000 5967700 7791400 1400800 496370 904440 0 0 0 0 0 0 32402 3251 34072 169665;169666 170977;170978 170977 2 TANLNLETR SVKDDSILSVTVDGKTANLNLETRTVECEE VTVDGKTANLNLETRTVECEEGSEDDESLR K T A T R T 1 1 2 0 0 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1030.5407 Q9UKF6;G5E9W3 Q9UKF6 643 651 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.00049894 120.12 By matching By matching By MS/MS By MS/MS 1 1 2 2 2.1349 1.7671 117.89 6 Median 1.143 1.1554 NaN 1 0 Median 2.5195 2.1759 NaN 1 0 Median 8.2069 8.2553 161.84 2 0 Median 1.5772 1.304 13.545 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34097000 7471000 26626000 1975500 944730 1030800 1656200 448930 1207200 28025000 5051900 22974000 2439700 1025400 1414300 0 0 0 0 0 0 32403 4309 34073 169667;169668;169669;169670;169671;169672 170979;170980 170979 2 TANQLMNDFAEK NFHKLVRERQEGEAKTANQLMNDFAEKETL EAKTANQLMNDFAEKETLKQKQIDEIRDKK K T A E K E 2 0 2 1 0 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 12 0 1380.6344 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 410 421 RAD50 DNA repair protein RAD50 yes no 2 0.00059433 72.096 By MS/MS By MS/MS 1 2 1.1026 1.1779 21.041 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1026 1.1779 NaN 1 0 Median 1.197 1.0503 28.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16191000 7309900 8881000 0 0 0 0 0 0 11465000 5215600 6249700 4725500 2094300 2631200 0 0 0 0 0 0 32404 3561 34074 169673;169674;169675 170981;170982;170983 170981 3 TANQLMNDFAEKETLK NFHKLVRERQEGEAKTANQLMNDFAEKETL ANQLMNDFAEKETLKQKQIDEIRDKKTGLG K T A L K Q 2 0 2 1 0 1 2 0 0 0 2 2 1 1 0 0 2 0 0 0 0 0 16 1 1851.9037 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 410 425 RAD50 DNA repair protein RAD50 yes no 2;3 2.197E-07 132.5 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2536 1.2226 13.766 5 Median 1.2796 1.2226 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92043 1.078 12.389 2 0 Median 1.5012 1.4031 NaN 1 0 Median 1.2536 1.3501 NaN 1 0 Median NaN NaN NaN 0 0 Median 119090000 57767000 61328000 16852000 7218900 9633300 0 0 0 92601000 46404000 46196000 1164100 430130 733930 8477400 3713600 4763800 0 0 0 32405 3561 34075 169676;169677;169678;169679;169680 170984;170985;170986;170987;170988;170989;170990;170991;170992;170993 170989 10 TAPEDFLGK DRTSDTKPTRIIRKRTAPEDFLGKGPTKKI RIIRKRTAPEDFLGKGPTKKILMGNEELTR R T A G K G 1 0 0 1 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 9 0 976.48656 A0A087WWS1;Q96FV9;R4GMN4 A0A087WWS1 417 425 THOC1 THO complex subunit 1 yes no 2 0.041822 45.972 By MS/MS 1 0.78034 0.79985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78034 0.79985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8692300 4529400 4162900 0 0 0 0 0 0 8692300 4529400 4162900 0 0 0 0 0 0 0 0 0 32406 62 34076 169681 170994 170994 1 TAPFDSRFPNQNQTR ______________________________ TAPFDSRFPNQNQTRNCWQNYLGHRLG___ K T A T R N 1 2 2 1 0 2 0 0 0 0 0 0 0 2 2 1 2 0 0 0 0 0 15 1 1777.8496 K7EQD3;A0A494C160;P14854 K7EQD3 14 28 COX6B1 Cytochrome c oxidase subunit 6B1 yes no 3 8.8033E-05 69.594 By MS/MS By MS/MS 1 1 0.61545 0.56765 51.708 2 Median 0.3947 0.39381 NaN 1 0 Median 0.95966 0.81822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22183000 12807000 9376600 12655000 9203600 3451600 9528000 3603000 5925000 0 0 0 0 0 0 0 0 0 0 0 0 32407 464 34077 169682;169683 170995;170996;170997;170998;170999;171000;171001;171002;171003;171004 170996 10 TAPGALTAKPPLAPKPGTTVASGVTAR GPGTPTGTPTRTPSRTAPGALTAKPPLAPK APKPGTTVASGVTARSASGQVTGGHGAAAA R T A A R S 6 1 0 0 0 0 0 3 0 0 2 2 0 0 5 1 5 0 0 2 0 0 27 2 2529.4279 Q4KMP7 Q4KMP7 160 186 TBC1D10B TBC1 domain family member 10B yes yes 3;4 4.9651E-09 47.237 By MS/MS By matching 2 1 0.56679 0.69218 12.125 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50794 0.63278 15.504 2 0 Median 0.60735 0.69218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25218000 16736000 8481800 0 0 0 0 0 0 22314000 14984000 7330100 2903700 1752000 1151700 0 0 0 0 0 0 32408 3022 34078 169684;169685;169686 171005;171006;171007 171005 3 TAPLLLSYYLIK GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS LHRTAPLLLSYYLIKWGSECLATDVPLDTL R T A I K W 1 0 0 0 0 0 0 0 0 1 4 1 0 0 1 1 1 0 2 0 0 0 12 0 1393.8221 Q12769;G3V198;E9PR16 Q12769 766 777 NUP160 Nuclear pore complex protein Nup160 yes no 2 0.016133 34.532 By MS/MS 2 1.2265 1.0472 5.1609 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2265 1.0472 5.1609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1119000 534430 584560 0 0 0 0 0 0 0 0 0 1119000 534430 584560 0 0 0 0 0 0 32409 2756 34079 169687;169688 171008 171008 1 TAPPVTNNSEIQASEVLVAADKEK APPPPVDSKKPLEEKTAPPVTNNSEIQASE EIQASEVLVAADKEKVAPVIAPKITSVISR K T A E K V 4 0 2 1 0 1 3 0 0 1 1 2 0 0 2 2 2 0 0 3 0 0 24 1 2510.2864 Q96T58 Q96T58 2586 2609 SPEN Msx2-interacting protein yes yes 3 8.5923E-05 29.918 By matching By MS/MS 1 1 0.79306 0.88028 73.345 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2861 1.4786 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.48903 0.52406 NaN 1 0 Median NaN NaN NaN 0 0 Median 7515200 3844100 3671100 0 0 0 0 0 0 2816900 1371800 1445200 0 0 0 4698300 2472300 2225900 0 0 0 32410 3741 34080 169689;169690 171009;171010 171009 2 TAPTSTIAPGVVMASSPALPTQPAEEAAR VVQAASGDVQTYQIRTAPTSTIAPGVVMAS SSPALPTQPAEEAARKREVRLMKNREAARE R T A A R K 7 1 0 0 0 1 2 1 0 1 1 0 1 0 5 3 4 0 0 2 0 0 29 0 2820.4328 P16220;C9JBT4;C9J896;H7C1R5 P16220 256 284 CREB1 Cyclic AMP-responsive element-binding protein 1 yes no 3 1.5042E-05 34.558 By MS/MS By matching 1 1 0.36477 0.39131 12.275 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39043 0.42679 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.3408 0.35877 NaN 1 0 Median NaN NaN NaN 0 0 Median 23952000 16992000 6960800 0 0 0 0 0 0 20031000 14047000 5983600 0 0 0 3921800 2944700 977150 0 0 0 32411 2027 34081 169691;169692 171011;171012 171011 2 TAPVQAPPAPVIVTETPEPAMTSGVYRPPGAR GGGGGMEKSSGPWNKTAPVQAPPAPVIVTE EPAMTSGVYRPPGARLTTTRKTPQGPPEIY K T A A R L 5 2 0 0 0 1 2 2 0 1 0 0 1 0 8 1 4 0 1 4 0 0 32 1 3256.6914 Q9UKY7;H0Y8K3;D6R9V8;D6RFH2;D6RAV0 Q9UKY7 144 175 CDV3 Protein CDV3 homolog yes no 3 0.07512 6.4117 By MS/MS By matching 1 1 0.33806 0.37327 26.05 2 Median 0.2884 0.31048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39627 0.44877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8170400 6154900 2015500 5518400 4339600 1178900 0 0 0 2651900 1815300 836610 0 0 0 0 0 0 0 0 0 32412 4318 34082 169693;169694 171013 171013 1 TAPYVVTGSVDQTVK LNAHEHFVTSLDFHKTAPYVVTGSVDQTVK TAPYVVTGSVDQTVKVWECR__________ K T A V K V 1 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 3 0 1 4 0 0 15 0 1563.8144 P43034;I3L3N5 P43034 391 405 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes no 2 8.1355E-10 125.28 By MS/MS By matching By MS/MS By MS/MS 3 4 2 1 0.91231 0.81107 44.3 10 Median 0.88052 0.81852 18.589 3 0 Median 0.95815 0.81444 69.37 4 0 Median 0.72309 0.74363 10.119 2 0 Median 1.0837 0.97287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69863000 42324000 27538000 32913000 19147000 13766000 12242000 8846600 3395100 17430000 10390000 7039700 7277800 3940400 3337400 0 0 0 0 0 0 32413 2321 34083 169695;169696;169697;169698;169699;169700;169701;169702;169703;169704 171014;171015;171016;171017;171018;171019;171020 171020 7 TAQAAAALR EGFRRARHVVGEIRRTAQAAAALRRGDYRA VGEIRRTAQAAAALRRGDYRAFGRLMVESH R T A L R R 5 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 871.48756 P51570;K7EII7 P51570 288 296 GALK1 Galactokinase yes no 2 0.00089599 91.906 By MS/MS By matching 2 1 1.3896 1.2914 18.456 3 Median NaN NaN NaN 0 0 Median 1.3902 1.1767 13.145 2 0 Median 1.3896 1.551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4424100 1718300 2705800 0 0 0 3916700 1531100 2385600 507420 187250 320170 0 0 0 0 0 0 0 0 0 32414 2434 34084 169705;169706;169707 171021;171022 171022 2 TAQCFLR KDGVWNLQNEVTKERTAQCFLRVDDESMQR QNEVTKERTAQCFLRVDDESMQRFHNRVRQ R T A L R V 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 894.43817 Q6P2Q9 Q6P2Q9 1225 1231 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.036256 59.641 By MS/MS 1 0.86267 0.7164 NaN 1 Median NaN NaN NaN 0 0 Median 0.86267 0.7164 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1317500 583860 733600 0 0 0 1317500 583860 733600 0 0 0 0 0 0 0 0 0 0 0 0 32415 3157 34085 169708 171023 171023 1 TAQEHDKRDPVVAYYCR PPLPAQFKSIQHHLRTAQEHDKRDPVVAYY QEHDKRDPVVAYYCRLYAMQTGMKIDSKTP R T A C R L 2 2 0 2 1 1 1 0 1 0 0 1 0 0 1 0 1 0 2 2 0 0 17 2 2106.9905 Q9NP79;A0A087WY55 Q9NP79 23 39 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 4 0.063284 15.392 By MS/MS 1 0.83394 0.97837 NaN 1 Median NaN NaN NaN 0 0 Median 0.83394 0.97837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 885500 416270 469230 0 0 0 885500 416270 469230 0 0 0 0 0 0 0 0 0 0 0 0 32416 76 34086 169709 171024 171024 0 TAQEKDSLITPHVSR QDVADSFKKIFDEAKTAQEKDSLITPHVSR TAQEKDSLITPHVSRSSTPRESPCGKIAVA K T A S R S 1 1 0 1 0 1 1 0 1 1 1 1 0 0 1 2 2 0 0 1 0 0 15 1 1680.8795 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;H7BZ48;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2441 2455 RANBP2;RGPD1;RGPD2;RGPD6;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 3;4 7.8424E-07 92.38 By matching By matching By MS/MS By MS/MS By matching By matching 2 1 4 2 1 2 0.80327 0.8341 26.543 12 Median 0.65284 0.6637 10.913 2 0 Median 1.2618 1.2129 NaN 1 0 Median 0.79416 0.92125 6.7411 4 1 Median 0.8701 0.81046 5.4177 2 0 Median 0.36512 0.42741 NaN 1 0 Median 0.98936 0.87885 17.326 2 0 Median 46114000 24636000 21479000 2128600 1271200 857370 1944900 743780 1201100 36737000 19708000 17029000 1648600 793200 855380 1569900 1074700 495250 2085900 1045000 1040900 32417 2401;525;3762 34087 169710;169711;169712;169713;169714;169715;169716;169717;169718;169719;169720;169721 171025;171026;171027;171028;171029;171030;171031;171032;171033;171034;171035;171036 171031 12 TAQEVETYR FEKNFYQEHPDLARRTAQEVETYRRSKEIT PDLARRTAQEVETYRRSKEITVRGHNCPKP R T A Y R R 1 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 9 0 1095.5197 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4 J3KTA4 69 77 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 7.4362E-05 149.65 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.2936 1.1534 5.0021 5 Median NaN NaN NaN 0 0 Median 1.3328 1.1534 NaN 1 0 Median 1.1324 1.1572 NaN 1 0 Median 1.2936 1.0877 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3834 1.1152 8.5417 2 0 Median 14628000 6313400 8314900 0 0 0 5357000 2200000 3157000 8294500 3682000 4612500 632540 295330 337210 0 0 0 344270 136050 208220 32418 1334 34088 169722;169723;169724;169725;169726 171037;171038;171039;171040;171041 171038 5 TAQEVETYRR FEKNFYQEHPDLARRTAQEVETYRRSKEIT DLARRTAQEVETYRRSKEITVRGHNCPKPV R T A R R S 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 J3KTA4;P17844;J3QRQ7;J3QR02;J3KRX8;J3KTQ4 J3KTA4 69 78 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2;3 9.6148E-05 77.379 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 2 5 6 1.2404 1.217 24.528 19 Median 1.6294 1.6054 10.079 2 0 Median 1.4798 1.3439 6.8102 2 0 Median 1.3141 1.4665 5.3875 2 0 Median 1.5148 1.4115 28.259 2 0 Median 1.1091 1.1927 14.076 5 0 Median 1.0762 0.95146 18.588 6 2 Median 25453000 11121000 14331000 2474700 1120800 1353900 3822400 1454200 2368300 10535000 4465500 6069500 302070 120280 181790 4093600 1943900 2149700 4224900 2016800 2208200 32419 1334 34089 169727;169728;169729;169730;169731;169732;169733;169734;169735;169736;169737;169738;169739;169740;169741;169742;169743;169744;169745 171042;171043;171044;171045;171046;171047;171048;171049;171050;171051 171048 9 TAQGSLSLK HAIEESVVLIYDPIKTAQGSLSLKAYRLTP IYDPIKTAQGSLSLKAYRLTPKLMEVCKEK K T A L K A 1 0 0 0 0 1 0 1 0 0 2 1 0 0 0 2 1 0 0 0 0 0 9 0 903.50255 B3KS98;O15372;A0A087WZK9;E5RJT0;E5RGU4 B3KS98 171 179 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.0017097 78.516 By MS/MS By MS/MS By matching 1 1 1 0.94343 1.0196 15.865 3 Plateau 0.86426 0.81614 NaN 1 0 Median 1.2387 1.0558 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94343 0.79054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13084000 5953500 7130800 2464300 1274400 1189900 9954300 4377200 5577100 0 0 0 665760 301900 363860 0 0 0 0 0 0 32420 584 34090 169746;169747;169748 171052;171053;171054;171055 171055 4 TAQNHPMLVELK ______________________________ LLKTAQNHPMLVELKNGETYNGHLVSCDNW K T A L K N 1 0 1 0 0 1 1 0 1 0 2 1 1 0 1 0 1 0 0 1 0 0 12 0 1379.7231 V9GZ56;Q9Y4Z0;M0QXB0 V9GZ56 9 20 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes no 2;3 0.00058617 73.781 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 2 1 0.99874 0.84701 22.82 11 Median 1.212 1.1417 27.172 2 0 Median 1.1025 0.92704 20.62 4 0 Median 0.79435 0.75559 1.3458 2 0 Median 0.90605 0.74245 8.1222 2 0 Median 0.99874 1.156 NaN 1 0 Median NaN NaN NaN 0 0 Median 131470000 64997000 66474000 42195000 17898000 24297000 20064000 9433500 10631000 66442000 36293000 30149000 1361500 576550 785000 1408800 796760 612060 0 0 0 32421 4451 34091 169749;169750;169751;169752;169753;169754;169755;169756;169757;169758;169759 171056;171057;171058;171059;171060;171061;171062;171063;171064;171065;171066;171067;171068;171069 171063 14 TAQNLSIFLGSFR VQKKKVKELKVLDSKTAQNLSIFLGSFRMP SKTAQNLSIFLGSFRMPYQEIKNVILEVNE K T A F R M 1 1 1 0 0 1 0 1 0 1 2 0 0 2 0 2 1 0 0 0 0 0 13 0 1452.7725 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 856 868 DIAPH1 Protein diaphanous homolog 1 yes no 2 4.6616E-10 174.4 By MS/MS By MS/MS By MS/MS 1 1 1 1.3069 1.1056 18.621 3 Median 1.1697 1.0979 NaN 1 0 Median 1.3069 1.1056 NaN 1 0 Median 1.3954 1.521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16804000 7472800 9330700 10602000 4842700 5759800 4382500 1849200 2533400 1818600 780980 1037600 0 0 0 0 0 0 0 0 0 32422 274 34092 169760;169761;169762 171070;171071;171072;171073 171070 4 TAQNLSIFLGSYR PTKKKVKELRILDPKTAQNLSIFLGSYRMP PKTAQNLSIFLGSYRMPYEDIRNVILEVNE K T A Y R M 1 1 1 0 0 1 0 1 0 1 2 0 0 1 0 2 1 0 1 0 0 0 13 0 1468.7674 A6NML8;K4DI95;C9J6U3;O60879 A6NML8 713 725 DIAPH2 Protein diaphanous homolog 2 yes no 2 0.0010336 60.434 By MS/MS By matching 1 1 0.97279 0.92185 0.90978 2 Median 0.90848 0.91594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0417 0.9278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1187700 655050 532630 1083600 611180 472370 0 0 0 0 0 0 104120 43867 60251 0 0 0 0 0 0 32423 528 34093 169763;169764 171074;171075 171075 2 TAQSGALRDVSEELSR GSSQAPRKPEGAQARTAQSGALRDVSEELS AQSGALRDVSEELSRQLEDILSTYCVDNNQ R T A S R Q 2 2 0 1 0 1 2 1 0 0 2 0 0 0 0 3 1 0 0 1 0 0 16 1 1717.8595 P40222 P40222 62 77 TXLNA Alpha-taxilin yes yes 3 0.0026608 28.956 By MS/MS 1 0.91278 0.93587 NaN 1 Median 0.91278 0.93587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5544400 2634300 2910100 5544400 2634300 2910100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32424 2284 34094 169765 171076 171076 1 TAQVGGSFSGQDSDK YSIGVNGHLSGAYSKTAQVGGSFSGQDSDK TAQVGGSFSGQDSDKMGISMSDIQCLLDKE K T A D K M 1 0 0 2 0 2 0 3 0 0 0 1 0 1 0 3 1 0 0 1 0 0 15 0 1482.6587 Q14571 Q14571 1723 1737 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 2 7.805E-07 83.314 By MS/MS 2 1.347 1.1792 9.2261 2 Median NaN NaN NaN 0 0 Median 1.347 1.1792 9.2261 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4041500 1855200 2186300 0 0 0 4041500 1855200 2186300 0 0 0 0 0 0 0 0 0 0 0 0 32425 2882 34095 169766;169767 171077;171078 171077 2 TARPNITDNKDGTITVR QKGELTGEVRMPSGKTARPNITDNKDGTIT RPNITDNKDGTITVRYAPTEKGLHQMGIKY K T A V R Y 1 2 2 2 0 0 0 1 0 2 0 1 0 0 1 0 4 0 0 1 0 0 17 2 1870.9861 Q14315 Q14315 1809 1825 FLNC Filamin-C yes yes 3;4 9.2028E-12 98.572 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 3 3 1 0.98709 1.0076 18.121 16 Median 1.0792 1.0444 6.8998 4 0 Median 0.82459 0.81585 9.576 5 1 Median 1.0834 1.3024 28.13 3 0 Plateau 0.9687 0.98445 19.239 3 0 Median NaN NaN NaN 0 0 Median 1.2802 1.1951 NaN 1 0 Median 165060000 84035000 81024000 46458000 20876000 25581000 104190000 56082000 48107000 9415700 4883400 4532400 4046800 1762700 2284100 0 0 0 950730 430960 519780 32426 2871 34096 169768;169769;169770;169771;169772;169773;169774;169775;169776;169777;169778;169779;169780;169781;169782;169783 171079;171080;171081;171082;171083;171084;171085;171086;171087;171088;171089;171090;171091;171092;171093;171094 171091 16 TASALFAGFR ______________________________ ASERRTASALFAGFRALGLFSNDIPHVVRF R T A F R A 3 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 10 0 1039.5451 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 9 18 WDR36 WD repeat-containing protein 36 yes no 2 0.00016857 130.27 By MS/MS By matching By MS/MS 3 3 1 1.5169 1.4473 7.6733 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2396 1.3321 10.691 3 0 Median 1.709 1.4806 3.2256 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18095000 7330400 10764000 0 0 0 0 0 0 15907000 6577700 9328800 2188200 752740 1435400 0 0 0 0 0 0 32427 188 34097 169784;169785;169786;169787;169788;169789;169790 171095;171096;171097;171098;171099;171100 171096 6 TASDMVSTSR QEVIETLLSLEKQTRTASDMVSTSRILVAV EKQTRTASDMVSTSRILVAVVKMCYEAKEW R T A S R I 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 3 2 0 0 1 0 0 10 0 1053.4761 O00232 O00232 56 65 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.036655 46.158 By MS/MS 1 0.9138 0.90714 NaN 1 Median 0.9138 0.90714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1519200 848020 671190 1519200 848020 671190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32428 1449 34098 169791 171101 171101 1 TASFSESR LLNASGSTSTPAPSRTASFSESRADEVAPA STPAPSRTASFSESRADEVAPAKKAKPAMP R T A S R A 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 3 1 0 0 0 0 0 8 0 883.40356 P53396 P53396 453 460 ACLY ATP-citrate synthase yes yes 2 0.0041552 83.206 By MS/MS 1 1.8089 1.5369 NaN 1 Median NaN NaN NaN 0 0 Median 1.8089 1.5369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3723000 1161500 2561500 0 0 0 3723000 1161500 2561500 0 0 0 0 0 0 0 0 0 0 0 0 32429 2467 34099 169792 171102;171103 171102 2 TASFSESRADEVAPAKK LLNASGSTSTPAPSRTASFSESRADEVAPA SFSESRADEVAPAKKAKPAMPQDSVPSPRS R T A K K A 4 1 0 1 0 0 2 0 0 0 0 2 0 1 1 3 1 0 0 1 0 0 17 2 1792.8955 P53396 P53396 453 469 ACLY ATP-citrate synthase yes yes 4 0.064808 9.2834 By MS/MS 1 1.1912 1.354 NaN 1 Median 1.1912 1.354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1581600 842710 738840 1581600 842710 738840 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32430 2467 34100 169793 171104 171104 1 TASGSSVTSLDGTR GYMPSASMTRLMRSRTASGSSVTSLDGTRS RTASGSSVTSLDGTRSRSHTSEGTRSRSHT R T A T R S 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 4 3 0 0 1 0 0 14 0 1337.6423 Q92597;E5RJY1;E7ESM1 Q92597 328 341 NDRG1 Protein NDRG1 yes no 2 1.4713E-06 97.214 By MS/MS By MS/MS 2 1 1.3707 1.2768 18.342 2 Median 1.457 1.4536 NaN 1 0 Median 1.2895 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8485200 3452700 5032500 3124400 1323900 1800600 5360800 2128800 3232000 0 0 0 0 0 0 0 0 0 0 0 0 32431 3540 34101 169794;169795;169796 171105;171106;171107;171108 171108 4 TASNIIDVSAADSQGMEQHEYMDR ARTDEQALLSSILAKTASNIIDVSAADSQG AADSQGMEQHEYMDRARQYSTRLAVLSSSL K T A D R A 3 1 1 3 0 2 2 1 1 2 0 0 2 0 0 3 1 0 1 1 0 0 24 0 2667.1541 Q6IAA8;F5GX19;F5H3Y3;H0YFI1;F5H479 Q6IAA8 61 84 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 3 4.4524E-05 33.425 By MS/MS By MS/MS By matching 1 1 1 1.2137 1.0766 8.7836 3 Median 1.0463 1.0419 NaN 1 0 Median 1.2971 1.0766 NaN 1 0 Median 1.2137 1.2298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10114000 4422900 5691000 4020500 1791400 2229100 2383300 947270 1436100 3710000 1684200 2025800 0 0 0 0 0 0 0 0 0 32432 3137 34102 169797;169798;169799 171109;171110 171109 2 TASNVEEAFINTAK FAREHGLIFMETSAKTASNVEEAFINTAKE KTASNVEEAFINTAKEIYEKIQEGVFDINN K T A A K E 3 0 2 0 0 0 2 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 14 0 1493.7362 P61019;H7C125 P61019 152 165 RAB2A Ras-related protein Rab-2A yes no 2;3 1.4875E-08 136.96 By MS/MS By matching By matching 3 1 1 1.0728 0.99611 22.147 5 Median 1.0728 0.99611 20.851 3 0 Median 1.3847 1.2138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92523 0.7633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152880000 76570000 76310000 151690000 75980000 75708000 444270 182310 261960 0 0 0 747290 407550 339740 0 0 0 0 0 0 32433 2537 34103 169800;169801;169802;169803;169804 171111;171112;171113;171114;171115 171113 5 TASRPAPLVQQLSPSLLPNSK QPPEAPRKPANTLVKTASRPAPLVQQLSPS PLVQQLSPSLLPNSKSPREVPSPKVIKTPV K T A S K S 2 1 1 0 0 2 0 0 0 0 4 1 0 0 4 4 1 0 0 1 0 0 21 1 2203.2325 Q9Y6X9 Q9Y6X9 684 704 MORC2 MORC family CW-type zinc finger protein 2 yes yes 3 1.1904E-06 45.011 By MS/MS 1 0.42197 0.47788 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42197 0.47788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4544700 3339600 1205000 0 0 0 0 0 0 4544700 3339600 1205000 0 0 0 0 0 0 0 0 0 32434 4501 34104 169805 171116 171116 1 TASSVIELTCTK VVVTYSKGYPCGGNKTASSVIELTCTKTVG GNKTASSVIELTCTKTVGRPAFKRFDIDSC K T A T K T 1 0 0 0 1 0 1 0 0 1 1 1 0 0 0 2 3 0 0 1 0 0 12 0 1308.6595 P11717;S4R328 P11717 2087 2098 IGF2R Cation-independent mannose-6-phosphate receptor yes no 2 7.8353E-05 93.096 By MS/MS 1 0.58008 0.51443 NaN 1 Median NaN NaN NaN 0 0 Median 0.58008 0.51443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12402000 6864500 5537100 0 0 0 12402000 6864500 5537100 0 0 0 0 0 0 0 0 0 0 0 0 32435 1969 34105 169806 171117 171117 1 TASTLLKPAPSGLPSER DFIALGSKGQANESKTASTLLKPAPSGLPS STLLKPAPSGLPSERKRDAAAALSSASALT K T A E R K 2 1 0 0 0 0 1 1 0 0 3 1 0 0 3 3 2 0 0 0 0 0 17 1 1723.9468 Q8N201 Q8N201 41 57 INTS1 Integrator complex subunit 1 yes yes 3 6.9831E-06 66.673 By MS/MS By matching 1 1 0.69079 0.7431 35.195 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48336 0.57938 NaN 1 0 Median 0.98725 0.95308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12886000 8382500 4503800 0 0 0 0 0 0 12066000 7965900 4099700 820600 416570 404030 0 0 0 0 0 0 32436 3360 34106 169807;169808 171118 171118 1 TASTNNIAQAR ______________________________ MSSKTASTNNIAQARRTVQQLRLEASIERI K T A A R R 3 1 2 0 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 11 0 1145.5789 Q9UBI6 Q9UBI6 5 15 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 2 0.031209 31.074 By matching By MS/MS By matching 1 1 1 1.1503 0.92997 24.133 3 Plateau 0.98992 0.92997 NaN 1 0 Median 1.0127 0.81907 NaN 1 0 Median 1.3067 1.3063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1717400 815670 901700 288770 140670 148100 634760 326590 308170 793840 348410 445430 0 0 0 0 0 0 0 0 0 32437 4239 34107 169809;169810;169811 171119 171119 1 TASVFLLEK WSCDGRRLASGSFDKTASVFLLEKDRLVKE SGSFDKTASVFLLEKDRLVKENNYRGHGDS K T A E K D 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 9 0 1006.5699 Q96J01;D6RGZ2 Q96J01 78 86 THOC3 THO complex subunit 3 yes no 2 0.0049104 59.245 By matching By matching By MS/MS By matching 1 1 2 1 1.0454 0.99053 5.3478 5 Median 1.0454 0.9905 NaN 1 0 Median 1.1943 1.0371 NaN 1 0 Median 0.9967 1.0043 10.015 2 0 Median 1.1846 0.99053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19381000 9205100 10176000 2285000 939290 1345700 270550 101530 169030 16299000 7933600 8365500 525970 230670 295300 0 0 0 0 0 0 32438 3682 34108 169812;169813;169814;169815;169816 171120;171121;171122;171123 171123 4 TASVFLLEKDR WSCDGRRLASGSFDKTASVFLLEKDRLVKE SFDKTASVFLLEKDRLVKENNYRGHGDSVD K T A D R L 1 1 0 1 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 11 1 1277.698 Q96J01;D6RGZ2 Q96J01 78 88 THOC3 THO complex subunit 3 yes no 2;3 0.00084147 93.111 By matching By MS/MS By MS/MS 1 3 2 0.87523 0.9726 29.24 6 Median 1.4328 1.5348 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83443 0.908 10.152 3 0 Median 1.0082 0.8828 42.114 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17684000 8945500 8738400 2629800 1237700 1392100 0 0 0 11139000 5898200 5241200 3914800 1809600 2105100 0 0 0 0 0 0 32439 3682 34109 169817;169818;169819;169820;169821;169822 171124;171125 171125 2 TASVLSKDDVAPESGDTTVK EKQKERKKKRQQARKTASVLSKDDVAPESG SKDDVAPESGDTTVKKPESKKEQTPEHGKK K T A V K K 2 0 0 3 0 0 1 1 0 0 1 2 0 0 1 3 3 0 0 3 0 0 20 1 2019.0008 O76021;J3QSV6 O76021 312 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 1.2351E-09 92.939 By MS/MS By matching By MS/MS By MS/MS 1 1 3 2 0.92396 0.90572 14.544 7 Median NaN NaN NaN 0 0 Median 1.092 1.0215 NaN 1 0 Median 0.74168 0.77792 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85824 0.91675 20.574 3 1 Median 0.98894 0.88695 2.9617 2 0 Median 72904000 38768000 34136000 0 0 0 5358500 2289600 3069000 3157900 1987900 1170000 0 0 0 55123000 29938000 25185000 9264400 4551900 4712500 32440 1716 34110 169823;169824;169825;169826;169827;169828;169829 171126;171127;171128;171129;171130;171131;171132 171129 7 TASVPLDAVR ELRANVEEERAARLRTASVPLDAVRAEWER AARLRTASVPLDAVRAEWERTCGPYHKQRL R T A V R A 2 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 10 0 1027.5662 Q96DV4 Q96DV4 127 136 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 2 0.0022568 60.91 By MS/MS 1 1.5458 1.373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5458 1.373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1160400 489990 670410 0 0 0 0 0 0 0 0 0 1160400 489990 670410 0 0 0 0 0 0 32441 3629 34111 169830 171133 171133 1 TATADDKKLQFSLK GGKGTARRKKKVVHRTATADDKKLQFSLKK RTATADDKKLQFSLKKLGVNNISGIEEVNM R T A L K K 2 0 0 2 0 1 0 0 0 0 2 3 0 1 0 1 2 0 0 0 0 0 14 2 1564.8461 P20290 P20290 80 93 BTF3 Transcription factor BTF3 yes yes 2;3 1.1388E-06 95.631 By MS/MS By matching By MS/MS 2 1 1 1.0861 1.4376 18.523 4 Linear 1.167 1.2638 17.679 2 0 Median 1.0193 0.91975 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1455 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27779000 12690000 15090000 19479000 8919700 10559000 3431900 1537500 1894400 0 0 0 4868900 2232300 2636600 0 0 0 0 0 0 32442 2076 34112 169831;169832;169833;169834 171134;171135;171136;171137 171135 4 TATANGFQMVTSGVQSK SASQGSASAAEVLLRTATANGFQMVTSGVQ TANGFQMVTSGVQSKAVSDWLIASVEGRLT R T A S K A 2 0 1 0 0 2 0 2 0 0 0 1 1 1 0 2 3 0 0 2 0 0 17 0 1725.8356 Q969V3;K7EMW4;K7ENM2 Q969V3 178 194 NCLN Nicalin yes no 2 6.4797E-05 50.207 By MS/MS By matching 1 1 1.2372 1.1319 5.0709 2 Median 1.2506 1.1732 NaN 1 0 Median 1.2239 1.0921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7186700 2862600 4324100 6736800 2621700 4115000 449970 240910 209060 0 0 0 0 0 0 0 0 0 0 0 0 32443 3589 34113 169835;169836 171138 171138 1 TATCHSSSSPPIDAASAEPYGFR YSPTFSDSTSAVKEKTATCHSSSSPPIDAA SPPIDAASAEPYGFRASVLFDTMQHHLALN K T A F R A 4 1 0 1 1 0 1 1 1 1 0 0 0 1 3 5 2 0 1 0 0 0 23 0 2408.0703 P46821 P46821 1811 1833 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.0087593 20.199 By MS/MS 1 0.83534 0.72699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83534 0.72699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1248400 662980 585370 0 0 0 0 0 0 0 0 0 1248400 662980 585370 0 0 0 0 0 0 32444 2347 34114 169837 171139;171140 171140 2 TATDEAYKDPSNLQGK RDSDELKSWVNEKMKTATDEAYKDPSNLQG ATDEAYKDPSNLQGKVQKHQAFEAELSANQ K T A G K V 2 0 1 2 0 1 1 1 0 0 1 2 0 0 1 1 2 0 1 0 0 0 16 1 1736.8217 A0A0D9SF54;Q13813 Q13813 595 610 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.0423E-11 110.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 0.96918 1.0175 11.332 10 Median 1.0735 1.079 NaN 1 1 Median 1.0608 1.014 NaN 1 0 Median 0.85826 0.99111 11.751 2 0 Median 0.86532 0.8467 4.3093 2 0 Median 1.0214 1.0909 3.9358 2 0 Median 1.0438 0.93146 12.979 2 0 Median 72888000 37295000 35593000 2864300 1273300 1591000 17312000 7868800 9443500 26377000 14695000 11682000 10071000 5260200 4810300 9606400 4927200 4679200 6658100 3271100 3387000 32445 264;2838 34115 169838;169839;169840;169841;169842;169843;169844;169845;169846;169847 171141;171142;171143;171144;171145;171146;171147;171148;171149;171150;171151;171152;171153;171154;171155 171149 15 TATEKPGPAEAAR EVPRPRKRLTELLLRTATEKPGPAEAARQA LRTATEKPGPAEAARQASASRAWGLRFFRS R T A A R Q 4 1 0 0 0 0 2 1 0 0 0 1 0 0 2 0 2 0 0 0 0 0 13 1 1297.6626 P22570;A0A0C4DFN8;A0A0A0MSZ4;A0A0A0MTN9;A0A0A0MTR6;A0A0C4DGN7;A0A0A0MT64;J3QQX3 P22570 283 295 FDXR NADPH:adrenodoxin oxidoreductase, mitochondrial yes no 3 0.05005 26.13 By MS/MS 1 0.74218 0.75293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74218 0.75293 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 459510 246720 212790 0 0 0 0 0 0 459510 246720 212790 0 0 0 0 0 0 0 0 0 32446 2102 34116 169848 171156 171156 1 TATEKPLGELWK AVHEDIRVLSEDAIRTATEKPLGELWK___ AIRTATEKPLGELWK_______________ R T A W K - 1 0 0 0 0 0 2 1 0 0 2 2 0 0 1 0 2 1 0 0 0 0 12 1 1371.7398 P23919;H7C312 P23919 201 212 DTYMK Thymidylate kinase yes no 2;3 1.6256E-05 108.47 By MS/MS By MS/MS By matching By matching 3 1 2 1 1.0809 0.92735 17.837 7 Median 0.97495 0.91912 10.944 3 0 Median 1.0809 0.98918 NaN 1 0 Median 0.91967 0.90699 39.77 2 0 Median 1.1109 0.92735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79698000 38159000 41538000 67132000 32435000 34697000 2645000 1197800 1447200 8174900 3746900 4427900 1746000 779200 966770 0 0 0 0 0 0 32447 2120 34117 169849;169850;169851;169852;169853;169854;169855 171157;171158;171159;171160;171161;171162 171160 6 TATESFASDPILYR HGTHEYHAETIKNVRTATESFASDPILYRP RTATESFASDPILYRPVAVALDTKGPEIRT R T A Y R P 2 1 0 1 0 0 1 0 0 1 1 0 0 1 1 2 2 0 1 0 0 0 14 0 1569.7675 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 93 106 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2 5.4319E-08 126.67 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.0508 0.93736 12.395 5 Median 0.99136 0.93736 NaN 1 0 Median 1.0256 0.8844 12.578 2 0 Median 1.1427 1.1414 NaN 1 1 Median 1.0508 0.91315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61235000 29782000 31453000 19556000 9376000 10180000 28322000 14236000 14086000 12787000 5886900 6899700 570650 283190 287450 0 0 0 0 0 0 32448 2005;1237 34118 169856;169857;169858;169859;169860 171163;171164;171165 171164 3 TATESFASDPILYRPVAVALDTK HGTHEYHAETIKNVRTATESFASDPILYRP DPILYRPVAVALDTKGPEIRTGLIKGSGTA R T A T K G 4 1 0 2 0 0 1 0 0 1 2 1 0 1 2 2 3 0 1 2 0 0 23 1 2464.285 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 93 115 PKM Pyruvate kinase;Pyruvate kinase PKM no no 2;3 1.4279E-47 188.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 8 2 2 2 0.81834 0.82187 20.518 20 Median 0.82664 0.84242 2.6665 6 0 Median 0.79488 0.72647 29.067 8 0 Median 0.76136 0.82743 17.708 2 0 Median 0.88662 0.82242 0.42038 2 0 Median 0.7644 0.85599 5.1243 2 0 Median NaN NaN NaN 0 0 Median 306540000 163880000 142660000 179100000 94965000 84131000 72701000 39728000 32973000 50701000 27178000 23523000 2722500 1305400 1417100 1319900 700880 619050 0 0 0 32449 2005;1237 34119 169861;169862;169863;169864;169865;169866;169867;169868;169869;169870;169871;169872;169873;169874;169875;169876;169877;169878;169879;169880 171166;171167;171168;171169;171170;171171;171172;171173;171174;171175;171176;171177;171178;171179;171180;171181;171182;171183;171184;171185;171186;171187;171188;171189 171171 24 TATESFASDPILYRPVAVALDTKGPEIR HGTHEYHAETIKNVRTATESFASDPILYRP RPVAVALDTKGPEIRTGLIKGSGTAEVELK R T A I R T 4 2 0 2 0 0 2 1 0 2 2 1 0 1 3 2 3 0 1 2 0 0 28 2 3016.587 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 93 120 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3;4 1.2789E-20 67.33 By MS/MS 6 0.67349 0.66818 11.538 6 Median 0.67349 0.66818 11.538 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128500000 70383000 58120000 128500000 70383000 58120000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32450 2005;1237 34120 169881;169882;169883;169884;169885;169886 171190;171191;171192;171193;171194;171195;171196;171197;171198;171199;171200;171201;171202;171203 171191 14 TATGAISAVFGR RGLSVDSAQEVKRFRTATGAISAVFGRSQS RFRTATGAISAVFGRSQSLPGADSLLAKPI R T A G R S 3 1 0 0 0 0 0 2 0 1 0 0 0 1 0 1 2 0 0 1 0 0 12 0 1149.6142 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2044 2055 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00034761 147.2 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.2171 1.1758 16.992 6 Median NaN NaN NaN 0 0 Median 0.96125 0.91465 NaN 1 0 Median 1.1338 1.2193 18.677 2 0 Median 1.3216 1.1521 16.405 2 0 Median NaN NaN NaN 0 0 Median 1.6127 1.341 NaN 1 0 Median 48453000 23727000 24725000 0 0 0 3256400 1637400 1619000 42138000 20725000 21413000 2591100 1150300 1440700 0 0 0 467660 214910 252750 32451 991 34121 169887;169888;169889;169890;169891;169892 171204;171205;171206;171207;171208;171209 171209 6 TATGLTHIIETR ITSATLMKLEEIKERTATGLTHIIETRKVL KERTATGLTHIIETRKVLDLRINLKPSYLV R T A T R K 1 1 0 0 0 0 1 1 1 2 1 0 0 0 0 0 4 0 0 0 0 0 12 0 1311.7147 Q709C8 Q709C8 674 685 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 3 0.00081446 73.881 By MS/MS By MS/MS 1 1 0.71617 0.7156 NaN 1 Median 0.71617 0.7156 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5680300 2677100 3003300 5680300 2677100 3003300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32452 3205 34122 169893;169894 171210;171211 171211 2 TATGPSTGGGTVISR QKVNGASVVMVQPSKTATGPSTGGGTVISR TATGPSTGGGTVISRTQSSLVEAFNKILNS K T A S R T 1 1 0 0 0 0 0 4 0 1 0 0 0 0 1 2 4 0 0 1 0 0 15 0 1360.6947 Q8N1G0;F8WCX2;H0Y5I5 Q8N1G0 478 492 ZNF687 Zinc finger protein 687 yes no 2 0.00034792 56.225 By MS/MS 1 0.49056 0.53265 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49056 0.53265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1471800 713370 758460 0 0 0 0 0 0 1471800 713370 758460 0 0 0 0 0 0 0 0 0 32453 3357 34123 169895 171212 171212 1 TATLRPYLSAVR ______________________________ ______________________________ M T A V R A 2 2 0 0 0 0 0 0 0 0 2 0 0 0 1 1 2 0 1 1 0 0 12 1 1346.767 F8WCF6;P59998;F8WDD7;A0A0A6YYG9;F8WDW3;F8WE39 F8WCF6 2 13 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2 5.3243E-10 176.48 By MS/MS By MS/MS By MS/MS 1 1 1 1.01 1.0587 6.0852 3 Median 1.01 1.0587 NaN 1 0 Median 1.2033 1.1008 NaN 1 0 Median 0.94223 0.97694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 315660000 157770000 157890000 222530000 111480000 111050000 10429000 4738900 5690400 82695000 41547000 41148000 0 0 0 0 0 0 0 0 0 32454 1096 34124 169896;169897;169898 171213;171214;171215;171216;171217;171218;171219;171220 171216 8 TATPEIVDNKDGTVTVR RKGEITGEVHMPSGKTATPEIVDNKDGTVT TPEIVDNKDGTVTVRYAPTEVGLHEMHIKY K T A V R Y 1 1 1 2 0 0 1 1 0 1 0 1 0 0 1 0 4 0 0 3 0 0 17 1 1814.9374 O75369;E7EN95 O75369 1771 1787 FLNB Filamin-B yes no 2;3 1.0041E-14 168.61 By MS/MS By MS/MS By MS/MS 4 3 1 0.84877 0.83932 16.405 8 Median 0.85087 0.87613 13.338 4 0 Median 0.81365 0.74414 19.853 3 1 Median NaN NaN NaN 0 0 Median 0.8854 0.82472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176040000 88992000 87045000 83032000 46522000 36510000 90656000 41301000 49355000 0 0 0 2348300 1168600 1179600 0 0 0 0 0 0 32455 1664 34125 169899;169900;169901;169902;169903;169904;169905;169906 171221;171222;171223;171224;171225;171226;171227;171228;171229;171230;171231;171232;171233;171234 171229 13 TATPQQAQEVHEK VVLAYEPVWAIGTGKTATPQQAQEVHEKLR GKTATPQQAQEVHEKLRGWLKSNVSDAVAQ K T A E K L 2 0 0 0 0 3 2 0 1 0 0 1 0 0 1 0 2 0 0 1 0 0 13 0 1465.7161 P60174;U3KPZ0 P60174 213 225 TPI1 Triosephosphate isomerase yes no 2;3 2.2666E-06 125.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 4 2 1 2 0.92596 0.84071 11.79 17 Median 0.86644 0.82023 13.353 8 0 Median 0.97701 0.8391 0.85849 4 0 Median 0.92708 0.87742 0.74991 2 0 Median 1.0218 0.84466 NaN 1 0 Median 0.94899 0.98524 7.2818 2 0 Median NaN NaN NaN 0 0 Median 69483000 35694000 33789000 42100000 21923000 20177000 14612000 7430200 7181500 10655000 5320200 5334400 1323400 617150 706200 793660 403360 390300 0 0 0 32456 2523 34126 169907;169908;169909;169910;169911;169912;169913;169914;169915;169916;169917;169918;169919;169920;169921;169922;169923 171235;171236;171237;171238;171239;171240;171241;171242;171243;171244;171245;171246;171247;171248;171249;171250;171251;171252;171253 171240 19 TATPQQAQEVHEKLR VVLAYEPVWAIGTGKTATPQQAQEVHEKLR TATPQQAQEVHEKLRGWLKSNVSDAVAQST K T A L R G 2 1 0 0 0 3 2 0 1 0 1 1 0 0 1 0 2 0 0 1 0 0 15 1 1734.9013 P60174;U3KPZ0 P60174 213 227 TPI1 Triosephosphate isomerase yes no 3;4 0.00025486 45.33 By matching By MS/MS 1 3 0.79141 0.76387 9.411 3 Median 0.79141 0.83308 NaN 1 0 Median 0.77742 0.72614 7.1627 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5708600 3057900 2650700 1663000 819330 843710 4045600 2238500 1807000 0 0 0 0 0 0 0 0 0 0 0 0 32457 2523 34127 169924;169925;169926;169927 171254;171255;171256 171254 3 TATQLAVNK VEEGLHPQIIIRAFRTATQLAVNKIKEIAV IIRAFRTATQLAVNKIKEIAVTVKKADKVE R T A N K I 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 9 0 944.5291 Q99832;F8WAM2 Q99832 127 135 CCT7 T-complex protein 1 subunit eta yes no 2 0.00071478 102.72 By MS/MS By MS/MS 1 2 1.1605 0.97526 6.9847 3 Median 1.1619 1.0963 NaN 1 0 Median 1.154 0.97152 0.54297 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41938000 18590000 23347000 9634900 4281800 5353000 32303000 14308000 17994000 0 0 0 0 0 0 0 0 0 0 0 0 32458 3771 34128 169928;169929;169930 171257;171258;171259;171260;171261;171262 171262 6 TATSLAEGLSLVVSPDSIHSVAPENEGR LSFYLIFTNEGRALKTATSLAEGLSLVVSP SPDSIHSVAPENEGRLVHIIGALRTSKLLS K T A G R L 3 1 1 1 0 0 3 2 1 1 3 0 0 0 2 5 2 0 0 3 0 0 28 0 2835.425 Q9BTV4 Q9BTV4 60 87 TMEM43 Transmembrane protein 43 yes yes 3 0.013033 16.27 By matching By MS/MS 1 1 0.76386 0.73702 8.3821 2 Median NaN NaN NaN 0 0 Median 0.81111 0.69461 NaN 1 0 Median 0.71937 0.78203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715100 1847900 1867200 0 0 0 1281900 575240 706700 2433100 1272600 1160500 0 0 0 0 0 0 0 0 0 32459 3830 34129 169931;169932 171263 171263 1 TATTQETDGFQVK KDLYGPDNHLVEWHRTATTQETDGFQVKRP HRTATTQETDGFQVKRPGDVNVRCTVLLML R T A V K R 1 0 0 1 0 2 1 1 0 0 0 1 0 1 0 0 4 0 0 1 0 0 13 0 1424.6783 Q96GM5;F8VZ70;F8VUB0;F8VRQ4 Q96GM5 261 273 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 6.0388E-05 102.06 By MS/MS By MS/MS 1 2 0.89004 0.90887 44.745 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89004 0.90887 NaN 1 0 Median 1.0949 1.014 62.645 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10196000 4354400 5841900 0 0 0 0 0 0 3352200 1729000 1623200 6844100 2625300 4218700 0 0 0 0 0 0 32460 3659 34130 169933;169934;169935 171264;171265 171265 2 TATVGGAMMGSTHIYDMSTVMSR GSETPQLFTVLPEKRTATVGGAMMGSTHIY MGSTHIYDMSTVMSRKGPAPELQGVEVALA R T A S R K 2 1 0 1 0 0 0 3 1 1 0 0 4 0 0 3 4 0 1 2 0 0 23 0 2403.0691 Q13435;E9PPJ0;H0YEX5 Q13435 792 814 SF3B2 Splicing factor 3B subunit 2 yes no 3 1.381E-20 94.201 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 3 2 4 1.1287 1.1568 11.358 11 Median 1.1221 1.085 NaN 1 0 Median 1.2074 1.0659 NaN 1 0 Median 1.068 1.1742 4.9621 3 0 Median 1.1801 1.0281 17.503 2 0 Median 1.139 1.2632 14.815 4 2 Linear NaN NaN NaN 0 0 Median 57834000 26915000 30919000 5723800 2711100 3012700 504000 227730 276270 29676000 14212000 15465000 719120 295060 424060 21211000 9469600 11741000 0 0 0 32461 2817 34131;34132 169936;169937;169938;169939;169940;169941;169942;169943;169944;169945;169946 171266;171267;171268;171269;171270;171271;171272;171273;171274;171275 171270 1512;1513 10 TAVAHRPGAFK ESDVPLKTEEFEVTKTAVAHRPGAFKAELS EVTKTAVAHRPGAFKAELSKLVIVAKASRT K T A F K A 3 1 0 0 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 11 1 1153.6356 Q969H8 Q969H8 146 156 MYDGF Myeloid-derived growth factor yes yes 2 0.0020419 69.825 By matching By MS/MS 1 1 0.97239 0.9119 4.5024 2 Median 0.94404 0.9414 NaN 1 0 Median 1.0016 0.88333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1169100 535570 633500 522320 250390 271920 646750 285170 361580 0 0 0 0 0 0 0 0 0 0 0 0 32462 3583 34133 169947;169948 171276;171277 171276 2 TAVAPIER AKDFLAGGIAAAISKTAVAPIERVKLLLQV IAAAISKTAVAPIERVKLLLQVQHASKQIA K T A E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 855.48142 P05141;Q9H0C2;P12235;V9GYG0;P12236 P12236 24 31 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 2.5527E-05 122.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 2 1 1 4 1.1978 1.0298 12.52 17 Median 0.92567 0.90114 6.4675 5 2 Median 1.237 1.0298 11.071 5 1 Median 1.1059 1.0893 NaN 1 1 Median 1.2639 1.0542 NaN 1 0 Median 1.1978 1.1869 NaN 1 0 Median 1.274 1.0462 17.968 4 0 Median 151480000 65801000 85679000 45299000 20318000 24982000 91148000 38920000 52228000 2956800 1316000 1640800 4314100 1649900 2664200 3806500 1820100 1986400 3955200 1777300 2178000 32463 1977;1861;1976 34134 169949;169950;169951;169952;169953;169954;169955;169956;169957;169958;169959;169960;169961;169962;169963;169964;169965;169966;169967;169968;169969 171278;171279;171280;171281;171282;171283;171284;171285;171286;171287;171288;171289;171290;171291;171292;171293;171294;171295;171296;171297;171298;171299;171300;171301;171302;171303;171304;171305;171306;171307;171308;171309;171310 171285 33 TAVAPSAVNLADPR RTPAAAAAMNLASPRTAVAPSAVNLADPRT RTAVAPSAVNLADPRTPTAPAVNLAGARTP R T A P R T 4 1 1 1 0 0 0 0 0 0 1 0 0 0 2 1 1 0 0 2 0 0 14 0 1380.7361 Q9UQ35 Q9UQ35 2275 2288 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 3.7581E-07 107.85 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.83611 0.69592 28.513 5 Median 0.56314 0.5459 NaN 1 1 Median 1.3165 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73311 0.75003 27.233 2 0 Median 0.83611 0.69592 NaN 1 0 Median 59570000 32539000 27030000 33610000 19452000 14158000 2531000 792830 1738100 0 0 0 0 0 0 22936000 11998000 10938000 493090 297060 196030 32464 4359 34135 169970;169971;169972;169973;169974 171311;171312;171313;171314 171311 4 TAVCDIPPR KNSSYFVEWIPNNVKTAVCDIPPRGLKMSA IPNNVKTAVCDIPPRGLKMSATFIGNSTAI K T A P R G 1 1 0 1 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 9 0 1027.5121 P04350;Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;P68371;Q3ZCM7;Q13885;Q9BVA1 P68371 351 359 TUBB4A;TUBB;TUBB8;TUBB4B;TUBB2A;TUBB2B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 0.00070224 103.56 By MS/MS By MS/MS By MS/MS 1 7 1 0.84132 0.73181 42.105 7 Median 0.83372 0.83185 NaN 1 0 Median 0.84132 0.72399 43.339 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1373 0.98093 NaN 1 0 Median 59887000 33315000 26572000 2594600 1652400 942250 54532000 30235000 24297000 0 0 0 0 0 0 0 0 0 2760000 1427600 1332400 32465 2634;1887;3849;2844;1849 34136 169975;169976;169977;169978;169979;169980;169981;169982;169983 171315;171316;171317;171318;171319;171320;171321;171322;171323;171324;171325;171326;171327;171328;171329;171330 171318 16 TAVDGPDLEMLTGQER YIPPHAALCLEVTLKTAVDGPDLEMLTGQE AVDGPDLEMLTGQERVALANRKRECGNAHY K T A E R V 1 1 0 2 0 1 2 2 0 0 2 0 1 0 1 0 2 0 0 1 0 0 16 0 1730.8145 Q14318;M0R2K9 Q14318 202 217 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8;Peptidyl-prolyl cis-trans isomerase yes no 2 1.9386E-06 87.618 By MS/MS By matching By MS/MS 1 1 1 0.8588 0.84848 19.277 3 Median 0.8588 0.84848 NaN 1 0 Median 1.1314 0.98582 NaN 1 0 Median 0.67286 0.67243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11643000 6540900 5101900 4337900 2315100 2022800 1143200 532690 610530 6161600 3693100 2468600 0 0 0 0 0 0 0 0 0 32466 2872 34137 169984;169985;169986 171331;171332;171333 171333 3 TAVDSLVAYSVK KASVSQVEADLKMLRTAVDSLVAYSVKIET MLRTAVDSLVAYSVKIETNENNLESAKGLL R T A V K I 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 3 0 0 12 0 1251.6711 Q07065 Q07065 555 566 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 7.8881E-05 93.058 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1.4253 1.2367 70.172 7 Median 1.07 0.99238 NaN 1 0 Median 1.5648 1.3073 12.672 2 0 Median 1.2313 1.2367 NaN 1 0 Median 2.6721 2.2781 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92521 0.77293 144.78 2 0 Median 106830000 43972000 62856000 48013000 22262000 25751000 37268000 11856000 25412000 16661000 7595100 9065900 2368700 596310 1772400 0 0 0 2517200 1662100 855080 32467 2730 34138 169987;169988;169989;169990;169991;169992;169993 171334;171335;171336;171337;171338;171339 171335 6 TAVEHATDEDILAK VRNPLGSTHPEATLKTAVEHATDEDILAKG KTAVEHATDEDILAKGKQSIRSQALGNQNS K T A A K G 3 0 0 2 0 0 2 0 1 1 1 1 0 0 0 0 2 0 0 1 0 0 14 0 1511.7468 E9PEM5;A0A494C1L5;A0A494BZW2;H0YAC6 E9PEM5 2011 2024 LRBA yes no 2;3 4.5235E-24 136.96 By MS/MS By MS/MS By matching 2 3 1 0.87829 0.96196 29.513 5 Median 0.85882 0.85913 0.72764 2 0 Median 1.6251 1.4928 14.755 2 0 Median 0.87829 0.96196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40324000 17633000 22691000 16954000 8863400 8091000 21406000 7730300 13676000 1963800 1038900 924860 0 0 0 0 0 0 0 0 0 32468 470 34139 169994;169995;169996;169997;169998;169999 171340;171341;171342;171343;171344;171345 171345 6 TAVEMLQNQLK EEKEQAEIQIKEESKTAVEMLQNQLKELNE EESKTAVEMLQNQLKELNEAVAALCGDQEI K T A L K E 1 0 1 0 0 2 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1273.67 P49454 P49454 2256 2266 CENPF Centromere protein F yes yes 2 0.00011478 131.22 By MS/MS 1 0.98264 1.0489 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98264 1.0489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19165000 8967200 10198000 0 0 0 0 0 0 19165000 8967200 10198000 0 0 0 0 0 0 0 0 0 32469 2383 34140 170000 171346;171347 171346 2 TAVETAVLLLR LGIWEPLAVKLQTYKTAVETAVLLLRIDDI QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ K T A L R I 2 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 2 0 0 11 0 1184.7129 P49368;B4DUR8 P49368 508 518 CCT3 T-complex protein 1 subunit gamma yes no 2 0.00011141 124.23 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 1 2 1 1 1 1.1542 1.0734 20.705 9 Median 1.0621 1.035 13.218 3 0 Median 1.0058 0.86852 NaN 1 0 Median 1.2123 1.2356 7.8134 2 0 Median 1.3094 1.1014 NaN 1 0 Median 1.6419 1.659 NaN 1 0 Median 1.1709 1.0034 NaN 1 0 Median 33074000 15091000 17983000 21677000 10007000 11670000 2023400 938930 1084500 6371500 2888200 3483300 615950 267610 348350 1138800 433750 705000 1246800 555510 691320 32470 2379 34141 170001;170002;170003;170004;170005;170006;170007;170008;170009 171348;171349;171350;171351;171352 171348 5 TAVHAGNINFK ______________________________ ______________________________ M T A F K W 2 0 2 0 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 1 0 0 11 0 1170.6146 P35221;G3XAM7;E5RIB1;E5RG03;E5RGY6;E5RJL0;E5RIE0;E5RHV7;E5RFM3;E5RJZ2;E5RIT8 P35221 2 12 CTNNA1 Catenin alpha-1 yes no 2 0.00015966 113.62 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.031 0.92027 9.1506 4 Median 1.1099 0.98204 NaN 1 0 Median 0.95763 0.83699 NaN 1 1 Median 0.79404 0.86239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1963 1.0046 NaN 1 0 Median 24880000 14341000 10539000 774090 339920 434170 5686500 3605000 2081600 16844000 9626600 7217200 0 0 0 0 0 0 1576000 769880 806080 32471 2232 34142 170010;170011;170012;170013 171353;171354;171355 171353 3 TAVIDHHNYDISDLGQHTLIVADTENLLK RELGSECGIEFDEEKTAVIDHHNYDISDLG GQHTLIVADTENLLKAPTIVGKSSLNPILF K T A L K A 2 0 2 4 0 1 1 1 3 3 4 1 0 0 0 1 3 0 1 2 0 0 29 0 3244.6364 P39656;A0A0C4DGS1;U3KQ84 P39656 154 182 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 3;4;5 1.4375E-14 66.447 By MS/MS By MS/MS By matching 3 2 1 1.0421 0.99382 18.925 6 Median NaN NaN NaN 0 0 Median 1.1731 0.99994 18.588 3 1 Median 1.0421 1.0413 7.4646 2 0 Median 0.83841 0.70697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68565000 31574000 36992000 0 0 0 30090000 14556000 15534000 37424000 16600000 20824000 1051600 417630 633950 0 0 0 0 0 0 32472 253 34143 170014;170015;170016;170017;170018;170019 171356;171357;171358;171359;171360;171361 171359 6 TAVISIGNQLLHLK FFEFSKEVDEKSSLKTAVISIGNQLLHLKE KTAVISIGNQLLHLKETDTATLRASLAQFE K T A L K E 1 0 1 0 0 1 0 1 1 2 3 1 0 0 0 1 1 0 0 1 0 0 14 0 1505.893 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 5006 5019 SYNE2 Nesprin-2 yes no 3 0.0029217 33.685 By matching By MS/MS 1 1 1.1622 1.138 44.388 2 Median NaN NaN NaN 0 0 Median 1.7722 1.5577 NaN 1 0 Median 0.76216 0.83147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3561900 1524400 2037500 0 0 0 1127200 411400 715830 2434600 1113000 1321700 0 0 0 0 0 0 0 0 0 32473 3521 34144 170020;170021 171362;171363 171363 2 TAVLTAFANGR LMFEHYNIPAFFLCKTAVLTAFANGRSTGL FLCKTAVLTAFANGRSTGLILDSGATHTTA K T A G R S 3 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1119.6037 O96019;O94805 O96019 154 164 ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 0.00088993 85.731 By MS/MS 1 1.364 1.4849 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.364 1.4849 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9523400 3674600 5848800 0 0 0 0 0 0 9523400 3674600 5848800 0 0 0 0 0 0 0 0 0 32474 1809 34145 170022 171364 171364 1 TAVPPGLSSLPLTSVGNTGMK GFGMTSPPPPTSPSRTAVPPGLSSLPLTSV LSSLPLTSVGNTGMKKVPKKLEEIPPASPE R T A M K K 1 0 1 0 0 0 0 3 0 0 3 1 1 0 3 3 3 0 0 2 0 0 21 0 2026.0769 Q96L91;A0A0A0MR80;A0A0A0MR72;Q6ZTU2 Q96L91 325 345 EP400;EP400NL E1A-binding protein p400;EP400 N-terminal-like protein yes no 2 4.0765E-06 44.457 By MS/MS 1 0.52024 0.56099 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52024 0.56099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4329700 2722000 1607700 0 0 0 0 0 0 4329700 2722000 1607700 0 0 0 0 0 0 0 0 0 32475 3700 34146 170023 171365;171366 171366 2 TAVPSFLTK GAVQCPVTQKPRLTRTAVPSFLTKREQSDV KPRLTRTAVPSFLTKREQSDVKKVPKGVPL R T A T K R 1 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 9 0 962.54368 Q96QD9 Q96QD9 253 261 FYTTD1 UAP56-interacting factor yes yes 2 0.010372 48.283 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 0.87556 0.73256 32.574 5 Median 1.1238 1.0805 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44527 0.4366 NaN 1 0 Median 0.92663 0.78934 NaN 1 0 Median 0.70453 0.70096 NaN 1 0 Median 0.87556 0.73256 NaN 1 0 Median 10588000 5955800 4632000 4475300 2427100 2048200 0 0 0 779390 499740 279650 232140 85582 146560 4458500 2647000 1811500 642450 296360 346090 32476 3720 34147 170024;170025;170026;170027;170028 171367;171368 171367 2 TAVSGIRPENLK YDKYVKPTEPVTDYRTAVSGIRPENLKQGE DYRTAVSGIRPENLKQGEELEVVQKEVAEM R T A L K Q 1 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1283.7197 Q9GZR2 Q9GZR2 291 302 REXO4 RNA exonuclease 4 yes yes 2;3 0.0018172 60.167 By matching By MS/MS By MS/MS 1 2 1 1.0699 1.0541 18.96 4 Median NaN NaN NaN 0 0 Median 1.1057 1.0094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0699 1.1053 0.56943 2 0 Median 0.81607 0.74119 NaN 1 0 Median 13931000 6827400 7103800 0 0 0 835630 446650 388980 0 0 0 0 0 0 10904000 5157200 5746900 2191600 1223600 967970 32477 3912 34148 170029;170030;170031;170032 171369;171370;171371;171372 171372 4 TAVSSELR DLSQNFPTKARAITKTAVSSELRTEVEENQ KARAITKTAVSSELRTEVEENQKYFKGTLG K T A L R T 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 8 0 861.4556 Q9NYU2 Q9NYU2 363 370 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.020415 46.426 By MS/MS 1 1.5176 1.2756 NaN 1 Median NaN NaN NaN 0 0 Median 1.5176 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1831200 727120 1104100 0 0 0 1831200 727120 1104100 0 0 0 0 0 0 0 0 0 0 0 0 32478 4179 34149 170033 171373;171374 171373 2 TAVSSELRTEVEENQK DLSQNFPTKARAITKTAVSSELRTEVEENQ AVSSELRTEVEENQKYFKGTLGLQPGDSAL K T A Q K Y 1 1 1 0 0 1 4 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 16 1 1818.8959 Q9NYU2 Q9NYU2 363 378 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2;3 2.299E-09 127.56 By MS/MS 2 0.91592 0.91702 2.3533 2 Median 0.91592 0.91702 2.3533 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44620000 21956000 22664000 44620000 21956000 22664000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32479 4179 34150 170034;170035 171375;171376;171377;171378 171377 4 TAVTGSLSENDPLR PLDQKLKYQIDKLIKTAVTGSLSENDPLRF KTAVTGSLSENDPLRFKPHPSNMMSKLSSE K T A L R F 1 1 1 1 0 0 1 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 14 0 1458.7314 Q8NEJ9;G3V4G1 Q8NEJ9 116 129 NGDN Neuroguidin yes no 2 0.00026924 74.944 By MS/MS By MS/MS By matching 1 1 1 0.87298 1.1739 24.915 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85189 0.84147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1656 1.1739 NaN 1 0 Median 0.87298 0.72096 NaN 1 0 Median 27320000 11255000 16065000 0 0 0 0 0 0 3341600 1739200 1602400 0 0 0 21303000 8065600 13238000 2675000 1450300 1224700 32480 3430 34151 170036;170037;170038 171379;171380;171381 171379 3 TAVTTVPSMGIGLVK GGVAWIGGKSLEVTKTAVTTVPSMGIGLVK TAVTTVPSMGIGLVKGGVSAVAGGVTAVGS K T A V K G 1 0 0 0 0 0 0 2 0 1 1 1 1 0 1 1 3 0 0 3 0 0 15 0 1472.8273 Q8WUH6 Q8WUH6 70 84 TMEM263 Transmembrane protein 263 yes yes 2 3.1368E-09 99.215 By MS/MS By matching 2 2 0.90117 0.84996 22.246 4 Median 0.90117 0.84996 0.36589 2 0 Median 0.88862 0.76108 36.912 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34156000 17681000 16475000 33346000 17305000 16041000 809770 375540 434230 0 0 0 0 0 0 0 0 0 0 0 0 32481 3490 34152;34153 170039;170040;170041;170042 171382;171383;171384;171385 171384 1742 4 TAVVIDLGEAFTK ______________________________ EKTAVVIDLGEAFTKCGFAGETGPRCIIPS K T A T K C 2 0 0 1 0 0 1 1 0 1 1 1 0 1 0 0 2 0 0 2 0 0 13 0 1362.7395 Q9NZ32;G3V2Q5;G3V5Y4;F6S9Y6;V9GYX7;G3V524 Q9NZ32 14 26 ACTR10 Actin-related protein 10 yes no 2 0.0010843 74.162 By MS/MS 1 1.0052 0.85913 NaN 1 Median NaN NaN NaN 0 0 Median 1.0052 0.85913 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6052300 3077600 2974600 0 0 0 6052300 3077600 2974600 0 0 0 0 0 0 0 0 0 0 0 0 32482 4183 34154 170043 171386 171386 1 TAVVVGTITDDVR SRMIRKMKLPGRENKTAVVVGTITDDVRVQ NKTAVVVGTITDDVRVQEVPKLKVCALRVT K T A V R V 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 3 0 0 4 0 0 13 0 1344.7249 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0;F8VUA6 J3QQ67 81 93 RPL18 60S ribosomal protein L18 yes no 2;3 3.7034E-41 218.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 2 2 4 4 1.2774 1.1021 16.703 22 Median 1.056 0.98617 17.755 5 0 Median 1.1728 0.99292 12.22 5 0 Median 1.2962 1.2797 16.369 2 1 Median 1.4346 1.2209 1.6269 2 0 Median 1.2578 1.2939 15.861 4 0 Median 1.3632 1.0819 2.1366 4 1 Median 1108600000 499750000 608860000 537190000 246800000 290390000 170830000 76951000 93882000 94674000 41734000 52939000 12053000 4979400 7073700 184640000 84453000 100190000 109230000 44841000 64388000 32483 1342 34155 170044;170045;170046;170047;170048;170049;170050;170051;170052;170053;170054;170055;170056;170057;170058;170059;170060;170061;170062;170063;170064;170065 171387;171388;171389;171390;171391;171392;171393;171394;171395;171396;171397;171398;171399;171400;171401;171402;171403;171404;171405;171406;171407;171408;171409;171410;171411;171412;171413;171414;171415;171416;171417;171418;171419;171420;171421;171422;171423;171424 171390 38 TAVVVGTITDDVRVQEVPK SRMIRKMKLPGRENKTAVVVGTITDDVRVQ VGTITDDVRVQEVPKLKVCALRVTSRARSR K T A P K L 1 1 0 2 0 1 1 1 0 1 0 1 0 0 1 0 3 0 0 6 0 0 19 1 2025.1106 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0;F8VUA6 J3QQ67 81 99 RPL18 60S ribosomal protein L18 yes no 3 3.345E-08 75.548 By MS/MS By matching By MS/MS 1 1 1 1.1501 1.296 9.586 3 Plateau 1.2449 1.2996 NaN 1 0 Median 1.1501 1.077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0832 1.1446 NaN 1 0 Median NaN NaN NaN 0 0 Median 19749000 8225100 11523000 14948000 5952600 8995100 1374200 684590 689600 0 0 0 0 0 0 3426600 1587900 1838700 0 0 0 32484 1342 34156 170066;170067;170068 171425;171426;171427 171426 3 TAVWEEGPGGELVIQQK LEHLPQEVPYNVQQKTAVWEEGPGGELVIQ VWEEGPGGELVIQQKLLVPKESYVKLLIGP K T A Q K L 1 0 0 0 0 2 3 3 0 1 1 1 0 0 1 0 1 1 0 2 0 0 17 0 1839.9367 O75616;K7EQJ8 O75616 372 388 ERAL1 GTPase Era, mitochondrial yes no 2 1.8932E-05 77.062 By MS/MS By matching 1 1 0.93214 0.90125 12.949 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75592 0.8224 NaN 1 0 Median 1.1494 0.98767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3021800 1521000 1500800 0 0 0 0 0 0 2861800 1437000 1424800 160050 83989 76061 0 0 0 0 0 0 32485 1687 34157 170069;170070 171428 171428 1 TAWGQQPDLAANEAQLLR YAFNSGNVERFQTLKTAWGQQPDLAANEAQ GQQPDLAANEAQLLRKIQLLCLMEMTFTRP K T A L R K 4 1 1 1 0 3 1 1 0 0 3 0 0 0 1 0 1 1 0 0 0 0 18 0 1981.0017 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 253 270 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2;3 4.1142E-11 103.75 By MS/MS By matching 2 2 1.0011 0.93043 5.5514 4 Median 0.95373 0.94951 5.741 2 0 Median 1.0561 0.90815 6.2981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23901000 11358000 12543000 19154000 9127800 10027000 4746500 2230300 2516200 0 0 0 0 0 0 0 0 0 0 0 0 32486 4345 34158 170071;170072;170073;170074 171429;171430;171431;171432;171433;171434 171431 6 TAWNPLGEAAPPGELYR DVANIISGSGRPRRRTAWNPLGEAAPPGEL WNPLGEAAPPGELYRRTLDSDEERPRPAPP R T A Y R R 3 1 1 0 0 0 2 2 0 0 2 0 0 0 3 0 1 1 1 0 0 0 17 0 1840.9108 Q9BW71 Q9BW71 509 525 HIRIP3 HIRA-interacting protein 3 yes yes 2 0.00049671 42.095 By matching By MS/MS 1 1 0.37875 0.39825 34.744 2 Median 0.30022 0.3115 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.47782 0.50916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3092900 2248900 843980 960740 730650 230090 0 0 0 2132200 1518300 613890 0 0 0 0 0 0 0 0 0 32487 3865 34159 170075;170076 171435;171436 171436 2 TAWVFDDK LEYTKDEQLESLFQRTAWVFDDKYKRPGYG LESLFQRTAWVFDDKYKRPGYGAYDAFKHA R T A D K Y 1 0 0 2 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 8 0 980.46035 P05198;G3V4T5;H0YJS4 P05198 134 141 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.0095557 60.59 By matching By MS/MS By MS/MS 1 1 1 1.3842 1.173 11.839 3 Median NaN NaN NaN 0 0 Median 1.3842 1.173 NaN 1 0 Median 1.466 1.4057 NaN 1 0 Median 1.3353 1.1251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9669400 4070300 5599100 0 0 0 1169400 476130 693230 5411800 2249200 3162700 3088200 1345000 1743200 0 0 0 0 0 0 32488 1862 34160 170077;170078;170079 171437;171438 171437 2 TAWVFDDKYK LEYTKDEQLESLFQRTAWVFDDKYKRPGYG SLFQRTAWVFDDKYKRPGYGAYDAFKHAVS R T A Y K R 1 0 0 2 0 0 0 0 0 0 0 2 0 1 0 0 1 1 1 1 0 0 10 1 1271.6186 P05198;G3V4T5;H0YJS4 P05198 134 143 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2;3 0.0017646 71.349 By MS/MS By matching By MS/MS By MS/MS 2 2 2 4 1.3134 1.1959 18.372 10 Median 1.073 1.0241 2.6337 2 0 Median 1.6216 1.5 19.779 2 0 Median 1.2152 1.2685 12.538 2 0 Median 1.3414 1.1862 18.361 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50147000 21440000 28706000 10391000 4930500 5460100 2246100 910110 1336000 28113000 11681000 16432000 9396400 3918400 5478000 0 0 0 0 0 0 32489 1862 34161 170080;170081;170082;170083;170084;170085;170086;170087;170088;170089 171439;171440;171441;171442;171443;171444;171445;171446 171439 8 TAYGPNGMNK YRNIQACKELAQTTRTAYGPNGMNKMVINH AQTTRTAYGPNGMNKMVINHLEKLFVTNDA R T A N K M 1 0 2 0 0 0 0 2 0 0 0 1 1 0 1 0 1 0 1 0 0 0 10 0 1051.4757 P50990;H7C4C8 P50990 45 54 CCT8 T-complex protein 1 subunit theta yes no 2 0.020251 52.716 By MS/MS 1 0.94119 0.80917 NaN 1 Median NaN NaN NaN 0 0 Median 0.94119 0.80917 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1978900 842920 1136000 0 0 0 1978900 842920 1136000 0 0 0 0 0 0 0 0 0 0 0 0 32490 2423 34162 170090 171447 171447 1 TAYVLADVMDDQLK VLSAPESLQNLFNNRTAYVLADVMDDQLKS RTAYVLADVMDDQLKSMWFTPFQAEEIDTD R T A L K S 2 0 0 3 0 1 0 0 0 0 2 1 1 0 0 0 1 0 1 2 0 0 14 0 1580.7756 Q69YN4 Q69YN4 1516 1529 KIAA1429 Protein virilizer homolog yes yes 2 0.00043243 70.488 By MS/MS By matching By matching 1 1 1 1.2404 1.1192 14.591 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99188 1.1047 NaN 1 0 Median 1.2404 1.1192 NaN 1 0 Median 1.3681 1.4313 NaN 1 0 Median NaN NaN NaN 0 0 Median 6609100 3358000 3251100 0 0 0 0 0 0 5093100 2622900 2470100 443840 188780 255060 1072100 546270 525870 0 0 0 32491 3130 34163 170091;170092;170093 171448;171449 171449 2 TCGFDFTGAVEDISK DAGMQLQGYRYYDPKTCGFDFTGAVEDISK TCGFDFTGAVEDISKIPEQSVLLLHACAHN K T C S K I 1 0 0 2 1 0 1 2 0 1 0 1 0 2 0 1 2 0 0 1 0 0 15 0 1645.7294 P00505 P00505 186 200 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.00021536 73.466 By MS/MS 1 1.4706 1.2607 NaN 1 Median NaN NaN NaN 0 0 Median 1.4706 1.2607 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1502100 576760 925360 0 0 0 1502100 576760 925360 0 0 0 0 0 0 0 0 0 0 0 0 32492 1823 34164 170094 171450;171451 171451 2 TCHSFIINEK HVVAASKAMKMGDWKTCHSFIINEKMNGKV MGDWKTCHSFIINEKMNGKVWDLFPEADKV K T C E K M 0 0 1 0 1 0 1 0 1 2 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1247.5969 Q99613;B5ME19 Q99613 751 760 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3 0.0013517 51.276 By MS/MS 1 1.0723 0.94002 NaN 1 Median NaN NaN NaN 0 0 Median 1.0723 0.94002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2360000 1088700 1271300 0 0 0 2360000 1088700 1271300 0 0 0 0 0 0 0 0 0 0 0 0 32493 3757 34165 170095 171452;171453 171453 2 TCNCETEDYGEK GEEEFSYGYSLKGIKTCNCETEDYGEKFDE GIKTCNCETEDYGEKFDENDVITCFANFES K T C E K F 0 0 1 1 2 0 3 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 12 0 1504.5446 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 388 399 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 4.3735E-05 95.573 By MS/MS 1 1.2571 1.1009 NaN 1 Median NaN NaN NaN 0 0 Median 1.2571 1.1009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2448000 1091100 1356900 0 0 0 2448000 1091100 1356900 0 0 0 0 0 0 0 0 0 0 0 0 32494 2680 34166 170096 171454 171454 1 TCNVLVALEQQSPDIAQGVHLDR KHIGYDDSSKGFDYKTCNVLVALEQQSPDI EQQSPDIAQGVHLDRNEEDIGAGDQGLMFG K T C D R N 2 1 1 2 1 3 1 1 1 1 3 0 0 0 1 1 1 0 0 3 0 0 23 0 2562.286 P31153 P31153 103 125 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 3 2.3436E-08 59.324 By MS/MS 1 0.18093 0.15786 NaN 1 Median NaN NaN NaN 0 0 Median 0.18093 0.15786 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10209000 8859300 1349600 0 0 0 10209000 8859300 1349600 0 0 0 0 0 0 0 0 0 0 0 0 32495 2202 34167 170097 171455 171455 1 TCPVQLWVDSTPPPGTR TYSPALNKMFCQLAKTCPVQLWVDSTPPPG PVQLWVDSTPPPGTRVRAMAIYKQSQHMTE K T C T R V 0 1 0 1 1 1 0 1 0 0 1 0 0 0 4 1 3 1 0 2 0 0 17 0 1909.9356 A0A0U1RQC9;P04637;A0A087WZU8;J3KP33;E7ESS1;E7EQX7;E9PFT5;E7EMR6 A0A0U1RQC9 101 117 TP53 Cellular tumor antigen p53 yes no 2 0.0037519 46.592 By MS/MS 1 0.45921 0.46244 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45921 0.46244 NaN 1 1 Median NaN NaN NaN 0 0 Median 1640500 1166000 474410 0 0 0 0 0 0 0 0 0 0 0 0 1640500 1166000 474410 0 0 0 32496 299 34168 170098 171456 171456 1 TCTTVAFTQVNSEDK IIKGKARLGRLVHRKTCTTVAFTQVNSEDK TCTTVAFTQVNSEDKGALAKLVEAIRTNYN K T C D K G 1 0 1 1 1 1 1 0 0 0 0 1 0 1 0 1 4 0 0 2 0 0 15 0 1699.7723 P62424;Q5T8U2 P62424 198 212 RPL7A 60S ribosomal protein L7a yes no 2 0.00019516 74.76 By MS/MS 1 1.0877 0.91433 NaN 1 Median NaN NaN NaN 0 0 Median 1.0877 0.91433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10315000 5509000 4806400 0 0 0 10315000 5509000 4806400 0 0 0 0 0 0 0 0 0 0 0 0 32497 2589 34169 170099 171457 171457 1 TCTTVAFTQVNSEDKGALAK IIKGKARLGRLVHRKTCTTVAFTQVNSEDK AFTQVNSEDKGALAKLVEAIRTNYNDRYDE K T C A K L 3 0 1 1 1 1 1 1 0 0 1 2 0 1 0 1 4 0 0 2 0 0 20 1 2140.047 P62424;Q5T8U2 P62424 198 217 RPL7A 60S ribosomal protein L7a yes no 3 3.28E-07 51.348 By MS/MS 1 1.1139 1.0028 NaN 1 Median NaN NaN NaN 0 0 Median 1.1139 1.0028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15631000 7141700 8489600 0 0 0 15631000 7141700 8489600 0 0 0 0 0 0 0 0 0 0 0 0 32498 2589 34170 170100 171458;171459 171458 2 TDAASKPFAEVR VISGQEVVREIENQKTDAASKPFAEVRILS NQKTDAASKPFAEVRILSCGELIPKSKVKK K T D V R I 3 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 12 1 1290.6568 C9JN15;C9JM79;Q13427;E9PG73 C9JN15 159 170 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 3 0.055087 26.969 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.78247 0.83573 26.05 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81787 0.93061 NaN 1 0 Median 0.7486 0.71942 NaN 1 0 Median 0.67861 0.75052 NaN 1 1 Median 1.3894 1.2717 NaN 1 0 Median 5231700 3081100 2150600 0 0 0 0 0 0 1870500 1093700 776870 317880 181610 136280 2579300 1629800 949480 463980 176010 287970 32499 709 34171 170101;170102;170103;170104 171460;171461 171461 2 TDAAVSFAK ______________________________ ______________________________ M T D A K D 3 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 9 0 908.46035 P05141 P05141 2 10 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.0019071 76.827 By MS/MS By MS/MS By matching By MS/MS By matching 5 3 1 1 1 1.1505 1.0427 20.636 11 Median 1.1267 0.99237 8.8206 5 0 Median 1.5366 1.3323 19.703 3 0 Plateau 1.0423 0.99688 NaN 1 0 Median 1.8321 1.5598 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9516 1.6397 NaN 1 0 Median 168310000 72385000 95926000 103970000 47401000 56565000 58805000 22923000 35882000 3361500 1437000 1924400 1022300 276250 746090 0 0 0 1156800 348100 808730 32500 1861 34172 170105;170106;170107;170108;170109;170110;170111;170112;170113;170114;170115 171462;171463;171464;171465;171466;171467;171468;171469;171470 171464 9 TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK GGFKNFGGHRDYGPRTDADSESDNSDNNTI LGEGVSTDQVGEFFKQIGIIKTNKKTGKPM R T D F K Q 1 0 3 5 0 2 3 4 0 1 1 1 0 3 0 4 3 0 0 3 0 0 34 0 3621.5867 Q92804;A0A075B7D9 Q92804 222 255 TAF15 TATA-binding protein-associated factor 2N yes no 3 0.046531 8.6902 By MS/MS 1 0.8474 0.87628 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8474 0.87628 NaN 1 0 Median NaN NaN NaN 0 0 Median 3079000 1645100 1433900 0 0 0 0 0 0 0 0 0 0 0 0 3079000 1645100 1433900 0 0 0 32501 3559 34173 170116 171471 171471 1 TDAGFTLR KETVREAEAASIKIRTDAGFTLRWVRKTPW AASIKIRTDAGFTLRWVRKTPWYQ______ R T D L R W 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 0 0 0 8 0 879.44503 P18206 P18206 1118 1125 VCL Vinculin yes yes 2 0.0035928 86.794 By MS/MS By MS/MS By matching 1 1 1 1.1327 0.94632 42.594 3 Median 1.1492 1.1134 NaN 1 0 Median 1.1327 0.94632 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68894 0.49756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15372000 7156800 8215300 3647600 1740900 1906700 11639000 5371900 6267100 0 0 0 85588 44009 41580 0 0 0 0 0 0 32502 2057 34174 170117;170118;170119 171472;171473;171474 171474 3 TDAIFTPYPGFK FCNVIDCNQENSCARTDAIFTPYPGFKSHV CARTDAIFTPYPGFKSHVKVSRVVNTYGPQ R T D F K S 1 0 0 1 0 0 0 1 0 1 0 1 0 2 2 0 2 0 1 0 0 0 12 0 1355.6762 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9 Q9NS73 197 208 MBIP MAP3K12-binding inhibitory protein 1 yes no 2 0.001303 54.608 By MS/MS 1 0.85906 0.916 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85906 0.916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4250600 2321300 1929200 0 0 0 0 0 0 4250600 2321300 1929200 0 0 0 0 0 0 0 0 0 32503 4097 34175 170120 171475 171475 1 TDAISEEKLREIFGLYGQTTGK ISNVPILILGNKIDRTDAISEEKLREIFGL KLREIFGLYGQTTGKGNVTLKELNARPMEV R T D G K G 1 1 0 1 0 1 3 3 0 2 2 2 0 1 0 1 3 0 1 0 0 0 22 2 2455.2595 Q9NR31;H0Y5E8 Q9NR31 139 160 SAR1A GTP-binding protein SAR1a yes no 3 0.032949 13.188 By MS/MS 1 3.3597 3.8704 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.3597 3.8704 NaN 1 0 Median NaN NaN NaN 0 0 Median 2869500 517830 2351700 0 0 0 0 0 0 0 0 0 0 0 0 2869500 517830 2351700 0 0 0 32504 4077 34176 170121 171476 171476 1 TDAPLNIR VAQAHDKPRYTLHYKTDAPLNIRSIFYVPD RYTLHYKTDAPLNIRSIFYVPDMKPSMFDV K T D I R S 1 1 1 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 8 0 898.48723 I3L0K7;I3L239;Q12931 Q12931 333 340 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.0058736 73.616 By MS/MS By MS/MS 1 2 1.1553 1.0259 12.589 3 Median 0.86901 0.8276 NaN 1 0 Median 1.1717 1.0292 0.44395 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48045000 21937000 26108000 10634000 5278300 5356200 37410000 16658000 20752000 0 0 0 0 0 0 0 0 0 0 0 0 32505 2771;1269 34177 170122;170123;170124 171477;171478 171478 2 TDAPQPDVKEEEEEKEEEK CCSGKKQTSGMEYKKTDAPQPDVKEEEEEK QPDVKEEEEEKEEEKDKGDEEEEGEEKLEE K T D E K D 1 0 0 2 0 1 8 0 0 0 0 3 0 0 2 0 1 0 0 1 0 0 19 2 2258.0074 P27824 P27824 517 535 CANX Calnexin yes yes 3;4 4.0671E-05 42.633 By MS/MS 2 0.70778 0.69057 14.912 2 Median NaN NaN NaN 0 0 Median 0.70778 0.69057 14.912 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4847900 2561000 2286900 0 0 0 4847900 2561000 2286900 0 0 0 0 0 0 0 0 0 0 0 0 32506 2158 34178 170125;170126 171479;171480 171479 2 TDASSASSFLDSDELER ELAGRPMKVGHVTERTDASSASSFLDSDEL ASSASSFLDSDELERTGIDLGTTGRLQLMA R T D E R T 2 1 0 3 0 0 2 0 0 0 2 0 0 1 0 5 1 0 0 0 0 0 17 0 1828.7963 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;A0A0U1RQW2 Q14498 330 346 RBM39 RNA-binding protein 39 yes no 2 2.9872E-18 170.07 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 2 3 1.026 0.91522 19.12 13 Median 0.94897 0.91522 NaN 1 0 Median 0.93155 0.82679 14.058 2 0 Median 1.1347 1.1279 19.503 4 0 Median 1.0666 0.89241 NaN 1 0 Median 0.86492 0.88488 14.52 2 0 Median 1.0297 0.89609 4.1711 3 0 Median 59608000 28075000 31534000 6375900 2961300 3414600 778760 407500 371260 40068000 18717000 21350000 949880 412680 537200 10644000 5188800 5455600 791450 387070 404380 32507 2879 34179 170127;170128;170129;170130;170131;170132;170133;170134;170135;170136;170137;170138;170139 171481;171482;171483;171484;171485;171486;171487;171488;171489;171490;171491 171486 11 TDAVDSVVR YAFAFIQVPQDDDARTDAVDSVVRDIQNTQ QDDDARTDAVDSVVRDIQNTQCLLNVEHLS R T D V R D 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 3 0 0 9 0 960.48762 Q7KZF4 Q7KZF4 811 819 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0017261 78.334 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1949 0.96073 7.5513 4 Linear 0.9662 0.94241 NaN 1 1 Median 1.1784 0.9794 NaN 1 0 Median 1.0121 1.0814 NaN 1 0 Median 1.0652 0.9071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26612000 11600000 15012000 2963200 1416700 1546500 19633000 8236300 11397000 1989100 946070 1043000 2026700 1000900 1025700 0 0 0 0 0 0 32508 3214 34180 170140;170141;170142;170143 171492;171493;171494;171495;171496 171495 5 TDAVEALTALNHYQIR PSAKTLSGLLEWECKTDAVEALTALNHYQI DAVEALTALNHYQIRVPNGSNPYTLKLCFS K T D I R V 3 1 1 1 0 1 1 0 1 1 2 0 0 0 0 0 2 0 1 1 0 0 16 0 1813.9323 B7WPG3;C9IYN3;D6W592;Q8WVV9;H7C464 B7WPG3 473 488 HNRNPLL;HNRPLL Heterogeneous nuclear ribonucleoprotein L-like yes no 2;3 0.00023166 48.004 By MS/MS By matching 2 1 0.98481 0.9935 20.238 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83213 0.85228 21.683 2 1 Median 1.2122 1.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13047000 6738400 6308600 0 0 0 0 0 0 12958000 6703200 6255100 88683 35161 53522 0 0 0 0 0 0 32509 629 34181 170144;170145;170146 171497;171498;171499 171498 3 TDDEVVQR GTVEEDLGKSREGSRTDDEVVQREEEAIQL KSREGSRTDDEVVQREEEAIQLDGLNASQI R T D Q R E 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 8 0 960.45124 P14625;Q96GW1;A0A1W2PRR1;F8VPC7 P14625 44 51 HSP90B1 Endoplasmin yes no 2 0.0032257 100.19 By MS/MS 1 1.2918 1.1286 NaN 1 Median NaN NaN NaN 0 0 Median 1.2918 1.1286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1761200 765920 995250 0 0 0 1761200 765920 995250 0 0 0 0 0 0 0 0 0 0 0 0 32510 2006 34182 170147 171500;171501 171501 2 TDDEVVQREEEAIQLDGLNASQIR GTVEEDLGKSREGSRTDDEVVQREEEAIQL EEAIQLDGLNASQIRELREKSEKFAFQAEV R T D I R E 2 2 1 3 0 3 4 1 0 2 2 0 0 0 0 1 1 0 0 2 0 0 24 1 2727.3311 P14625;Q96GW1;A0A1W2PRR1 P14625 44 67 HSP90B1 Endoplasmin yes no 3 5.0904E-18 75.112 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 0.96316 1.0744 8.5963 6 Median 0.95722 0.99295 3.2237 3 2 Median 1.1521 1.1398 NaN 1 0 Median 0.9579 1.1068 NaN 1 0 Median 1.3832 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43731000 19737000 23994000 20600000 9617400 10983000 20252000 8730300 11522000 2600200 1324100 1276100 278260 65284 212980 0 0 0 0 0 0 32511 2006 34183 170148;170149;170150;170151;170152;170153 171502;171503;171504;171505;171506;171507;171508;171509 171502 8 TDDIPVWDQEFLK DDPPPPEDDENKEKRTDDIPVWDQEFLKYT KRTDDIPVWDQEFLKYTLRKTTVSLQAANY R T D L K Y 0 0 0 3 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 1 0 0 13 0 1604.7722 E5RJR5;P63208;E7ERH2;F8W8N3;E5RGM3 E5RJR5 82 94 SKP1 S-phase kinase-associated protein 1 yes no 2 0.0094391 36.525 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1935 0.9862 24.267 4 Median 1.0134 0.95739 NaN 1 0 Median 1.1548 0.99172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.397 1.5851 NaN 1 0 Median 1.2335 0.98071 NaN 1 0 Median 17434000 8275700 9158400 9704800 4963700 4741100 4021300 1797400 2224000 0 0 0 0 0 0 3248700 1306200 1942500 459250 208420 250830 32512 853 34184 170154;170155;170156;170157 171510;171511;171512;171513 171513 4 TDDYGRDLSSVQTLLTK DVVESWIGEKENSLKTDDYGRDLSSVQTLL DYGRDLSSVQTLLTKQETFDAGLQAFQQEG K T D T K Q 0 1 0 3 0 1 0 1 0 0 3 1 0 0 0 2 3 0 1 1 0 0 17 1 1910.9585 A0A0D9SF54;Q13813 Q13813 2001 2017 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 0.015886 21.233 By matching By MS/MS 1 2 0.80994 0.97132 24.046 3 Median 0.97429 0.99458 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67749 0.7936 28.579 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8348900 4098800 4250100 2210600 970090 1240500 0 0 0 6138200 3128700 3009600 0 0 0 0 0 0 0 0 0 32513 264;2838 34185 170158;170159;170160 171514;171515 171514 2 TDEDEKTILNLENSNK VRAEVEQKLQLLEEKTDEDEKTILNLENSN DEDEKTILNLENSNKSLSGELREVKKDLSQ K T D N K S 0 0 3 2 0 0 3 0 0 1 2 2 0 0 0 1 2 0 0 0 0 0 16 1 1861.8905 Q8IX12 Q8IX12 1062 1077 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 0.00070003 50.079 By MS/MS 1 1.799 1.7136 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.799 1.7136 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3466900 1303500 2163400 0 0 0 0 0 0 0 0 0 3466900 1303500 2163400 0 0 0 0 0 0 32514 3331 34186 170161 171516 171516 1 TDEEGKDVPDHAVLEMK ICPTDEDLKDRTIKRTDEEGKDVPDHAVLE EEGKDVPDHAVLEMKANFTLPDVGDFLDEV R T D M K A 1 0 0 3 0 0 3 1 1 0 1 2 1 0 1 0 1 0 0 2 0 0 17 1 1911.8884 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1 Q9BUJ2 546 562 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 7.2118E-06 69.485 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 0.84213 0.88539 21.991 8 Median 0.65575 0.68778 NaN 1 0 Median 0.79072 0.78139 19.408 2 0 Median 0.76512 0.87457 NaN 1 1 Median 1.0408 0.99298 6.5146 2 0 Median 0.57976 0.64885 NaN 1 0 Median 1.3226 1.1942 NaN 1 0 Median 38049000 22626000 15423000 8967300 5523800 3443500 2898300 1699800 1198500 5090100 2802000 2288200 1994100 912920 1081200 17304000 11028000 6275900 1794900 659560 1135400 32515 3840 34187 170162;170163;170164;170165;170166;170167;170168;170169 171517;171518;171519;171520;171521 171518 5 TDEFQLHTNVNDGTEFGGSIYQK AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE NVNDGTEFGGSIYQKVNKKLETAVNLAWTA K T D Q K V 0 0 2 2 0 2 2 3 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2599.1827 P21796 P21796 175 197 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 3 6.7276E-18 77.287 By matching By matching By MS/MS By matching 1 1 1 1 1.4074 1.1957 18.715 4 Median 1.7521 1.7166 NaN 1 0 Median 1.431 1.2159 NaN 1 0 Median 1.2034 1.1585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3843 1.1759 NaN 1 0 Median 16282000 6841700 9440000 1649500 719310 930210 430530 203360 227180 14059000 5859700 8199400 0 0 0 0 0 0 142610 59360 83247 32516 2092 34188 170170;170171;170172;170173 171522;171523 171523 2 TDEGIAYR ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT K T D Y R G 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 8 0 923.43486 P32119 P32119 120 127 PRDX2 Peroxiredoxin-2 yes yes 2 0.0027345 105.39 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.2359 1.0356 9.7388 6 Median NaN NaN NaN 0 0 Median 1.2359 1.0356 1.6942 2 0 Median 1.001 0.9801 4.0433 2 0 Median 1.507 1.2453 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4792 1.1484 NaN 1 0 Median 15102000 7201900 7900100 0 0 0 7765300 3696500 4068800 6062000 2922200 3139800 1159200 542640 616570 0 0 0 115480 40614 74868 32517 2215 34189 170174;170175;170176;170177;170178;170179 171524;171525;171526;171527;171528 171525 5 TDEKVDESGPPAPSKPR KRTVTAAGAENIQQKTDEKVDESGPPAPSK EKVDESGPPAPSKPRRGRRPKSESQGNATK K T D P R R 1 1 0 2 0 0 2 1 0 0 0 2 0 0 4 2 1 0 0 1 0 0 17 2 1808.8905 Q29RF7 Q29RF7 1253 1269 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3;4 0.0036014 26.474 By MS/MS By MS/MS By MS/MS 1 2 3 0.50448 0.57489 35.024 6 Median NaN NaN NaN 0 0 Median 0.28911 0.28642 NaN 1 0 Median 0.42794 0.48762 10.17 2 0 Median 0.59367 0.66449 9.5476 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5227800 3447200 1780600 0 0 0 895610 714320 181290 3228600 2173600 1054900 1103600 559300 544330 0 0 0 0 0 0 32518 3003 34190 170180;170181;170182;170183;170184;170185 171529;171530;171531 171530 3 TDELIKDAPTTQHDK LFLERERAAQLAESKTDELIKDAPTTQHDK TDELIKDAPTTQHDKSGEWQETSGEIQWVS K T D D K S 1 0 0 3 0 1 1 0 1 1 1 2 0 0 1 0 3 0 0 0 0 0 15 1 1710.8424 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 1054 1068 WAPAL Wings apart-like protein homolog yes no 3 0.036272 16.427 By MS/MS 1 0.63619 0.72744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63619 0.72744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1309400 774510 534890 0 0 0 0 0 0 1309400 774510 534890 0 0 0 0 0 0 0 0 0 32519 3249 34191 170186 171532 171532 1 TDELLALGR LHSQNTWLNTELKTKTDELLALGREKGNEI TELKTKTDELLALGREKGNEILELKCNLEN K T D G R E 1 1 0 1 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 986.53966 P12270 P12270 205 213 TPR Nucleoprotein TPR yes yes 2 4.835E-12 147.52 By MS/MS By MS/MS 2 2 1.1418 1.1447 13.066 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0636 1.1447 13.433 2 1 Median 1.2843 1.1227 18.11 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18251000 7571000 10680000 0 0 0 0 0 0 16907000 7000600 9906700 1343800 570390 773390 0 0 0 0 0 0 32520 1978 34192 170187;170188;170189;170190 171533;171534 171533 2 TDEMLHTDQR TGSAPQGPAYHGVNRTDEMLHTDQRANHEG HGVNRTDEMLHTDQRANHEGSWPSHGTRQP R T D Q R A 0 1 0 2 0 1 1 0 1 0 1 0 1 0 0 0 2 0 0 0 0 0 10 0 1244.5455 O14497;H0Y488;A0A1B0GTU5 O14497 1529 1538 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3 0.014058 31.074 By MS/MS By matching 2 2 0.96612 0.95112 14.896 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76809 0.85535 5.6809 2 0 Median 1.2472 1.0822 8.9363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2131300 1130600 1000700 0 0 0 0 0 0 1793700 988480 805260 337580 142150 195430 0 0 0 0 0 0 32521 1480 34193 170191;170192;170193;170194 171535;171536;171537 171536 3 TDEQALLSSILAK LNGAEPNYHSLPSARTDEQALLSSILAKTA ARTDEQALLSSILAKTASNIIDVSAADSQG R T D A K T 2 0 0 1 0 1 1 0 0 1 3 1 0 0 0 2 1 0 0 0 0 0 13 0 1387.7559 Q6IAA8;F5GX19;F5H3Y3;H0YFI1;F5H479 Q6IAA8 48 60 LAMTOR1 Ragulator complex protein LAMTOR1 yes no 2 0.00030255 77.744 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.6394 1.4091 31.324 5 Median 0.95512 0.9028 21.127 2 0 Median 1.6394 1.4091 NaN 1 0 Median 1.732 1.6702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8938 1.5196 NaN 1 0 Median 29258000 12984000 16274000 20312000 9721900 10590000 3116900 1192800 1924100 5594700 1998000 3596600 0 0 0 0 0 0 234790 71305 163490 32522 3137 34194 170195;170196;170197;170198;170199 171538;171539;171540;171541;171542;171543 171538 6 TDFFIGGEEGMAEK VQELVNTFFSFLRRKTDFFIGGEEGMAEKL KTDFFIGGEEGMAEKLITQTFSHHNQLAQK K T D E K L 1 0 0 1 0 0 3 3 0 1 0 1 1 2 0 0 1 0 0 0 0 0 14 0 1529.6708 Q9Y266;A0A0A0MSU9 Q9Y266 40 53 NUDC Nuclear migration protein nudC yes no 2 0.0007945 60.255 By MS/MS By matching By MS/MS 1 1 1 1.4404 1.5213 20.214 3 Plateau 1.2581 1.1738 NaN 1 1 Median 1.1891 1.0215 NaN 1 0 Median 1.4404 1.5213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11215000 4689000 6525600 4317300 1884900 2432400 1626400 685980 940450 5270800 2118000 3152700 0 0 0 0 0 0 0 0 0 32523 4376 34195 170200;170201;170202 171544;171545;171546 171545 3 TDFIITASHDGHVK SYMHRDVITHVVCTKTDFIITASHDGHVKF KTDFIITASHDGHVKFWKKIEEGIEFVKHF K T D V K F 1 0 0 2 0 0 0 1 2 2 0 1 0 1 0 1 2 0 0 1 0 0 14 0 1539.7682 Q96BP3;F5H7P7;D6R9Q1;D6RD43 Q96BP3 101 114 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 3 6.9894E-05 75.462 By MS/MS By MS/MS 1 1 1.1489 1.0682 5.8487 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1152 1.1133 NaN 1 0 Median 1.1836 1.0249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29968000 13704000 16265000 0 0 0 0 0 0 23357000 10621000 12736000 6611800 3082600 3529200 0 0 0 0 0 0 32524 3609 34196 170203;170204 171547;171548;171549;171550 171548 4 TDFKEEPEPGFK GFHQVPFAPIVFIERTDFKEEPEPGFKRLA IERTDFKEEPEPGFKRLAWGQPVGLRHTGY R T D F K R 0 0 0 1 0 0 3 1 0 0 0 2 0 2 2 0 1 0 0 0 0 0 12 1 1422.6667 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 P47897 617 628 QARS Glutamine--tRNA ligase yes no 2;3 0.029694 35.269 By matching By MS/MS By matching 1 2 1 0.82766 0.80444 12.538 4 Median 0.69811 0.72208 NaN 1 0 Median 0.92666 0.89612 11.444 2 0 Median NaN NaN NaN 0 0 Median 0.80151 0.78299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6418400 3519200 2899200 2026600 1095400 931180 3644800 1950400 1694400 0 0 0 747090 473470 273620 0 0 0 0 0 0 32525 2356 34197 170205;170206;170207;170208 171551;171552 171552 2 TDFKEEPEPGFKR GFHQVPFAPIVFIERTDFKEEPEPGFKRLA ERTDFKEEPEPGFKRLAWGQPVGLRHTGYV R T D K R L 0 1 0 1 0 0 3 1 0 0 0 2 0 2 2 0 1 0 0 0 0 0 13 2 1578.7678 P47897;A0A1B0GVU9;B4DDN1;H7C0R3;A0A0U1RQX5;A0A0U1RRC8 P47897 617 629 QARS Glutamine--tRNA ligase yes no 3 0.0015057 40.066 By MS/MS By MS/MS By matching 1 1 1 0.8091 0.89116 12.562 3 Median 0.8091 0.89116 NaN 1 0 Median 0.79136 0.83754 NaN 1 0 Median 1.022 1.0667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8655300 4964900 3690400 4671000 2785300 1885700 2351500 1467800 883630 1632900 711750 921130 0 0 0 0 0 0 0 0 0 32526 2356 34198 170209;170210;170211 171553;171554;171555 171554 3 TDGALLVNAMFFKPHWDEK TTDGKLPEVTKDVERTDGALLVNAMFFKPH LLVNAMFFKPHWDEKFHHKMVDNRGFMVTR R T D E K F 2 0 1 2 0 0 1 1 1 0 2 2 1 2 1 0 1 1 0 1 0 0 19 1 2218.0881 P50454;E9PPV6;E9PR70;E9PK86;E9PMI5 P50454 195 213 SERPINH1 Serpin H1 yes no 3 2.3251E-05 46.131 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.0507 0.99956 15.514 4 Median 1.0309 0.99388 NaN 1 0 Median 1.0709 1.0053 NaN 1 0 Median 0.81753 0.85724 NaN 1 0 Median 1.3154 1.2493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16721000 8288800 8432400 2563000 1363300 1199700 4802200 2151700 2650500 6017300 3338300 2679000 3338700 1435500 1903200 0 0 0 0 0 0 32527 2414 34199 170212;170213;170214;170215 171556;171557;171558;171559 171558 4 TDGCHAYLSK KVQVMGKVPTISINKTDGCHAYLSKNSLDC ISINKTDGCHAYLSKNSLDCEIVSAKSSEM K T D S K N 1 0 0 1 1 0 0 1 1 0 1 1 0 0 0 1 1 0 1 0 0 0 10 0 1150.5077 Q01518 Q01518 413 422 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.014003 39.305 By MS/MS 1 0.92152 0.81112 NaN 1 Median NaN NaN NaN 0 0 Median 0.92152 0.81112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 797270 373680 423590 0 0 0 797270 373680 423590 0 0 0 0 0 0 0 0 0 0 0 0 32528 2686 34200 170216 171560 171560 1 TDGDDTETVPSEQSHASGK PGNKGRGQRGNTESKTDGDDTETVPSEQSH DTETVPSEQSHASGKLRKKKKKQKNKKSST K T D G K L 1 0 0 3 0 1 2 2 1 0 0 1 0 0 1 3 3 0 0 1 0 0 19 0 1959.8294 Q9BQ70;Q9H7D3;H3BSP8;H3BS87;H3BMJ8;H3BTU3 Q9BQ70 106 124 TCF25 Transcription factor 25 yes no 3 0.028548 13.832 By matching By MS/MS By matching 1 1 2 1.089 0.94457 13.528 4 Median 0.82792 0.83501 NaN 1 0 Median 1.0634 0.92917 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2053 1.0534 13.104 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1726800 907140 819610 317860 180510 137350 941780 502280 439500 0 0 0 467120 224350 242760 0 0 0 0 0 0 32529 3786 34201 170217;170218;170219;170220 171561 171561 1 TDGEPGPQGWSPR LVGEVGELAELFQWKTDGEPGPQGWSPRER WKTDGEPGPQGWSPRERAALQEELSDVLIY K T D P R E 0 1 0 1 0 1 1 3 0 0 0 0 0 0 3 1 1 1 0 0 0 0 13 0 1382.6215 Q9H773 Q9H773 75 87 DCTPP1 dCTP pyrophosphatase 1 yes yes 2 6.8337E-07 104.43 By MS/MS 1 0.83567 0.8143 NaN 1 Median 0.83567 0.8143 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9053900 5123000 3930900 9053900 5123000 3930900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32530 3979 34202 170221 171562;171563 171563 2 TDGFAEAIHSPQVAGVPR DRTVPSTPTLVVPHRTDGFAEAIHSPQVAG FAEAIHSPQVAGVPRFRFGPPEDMPQTSSS R T D P R F 3 1 0 1 0 1 1 2 1 1 0 0 0 1 2 1 1 0 0 2 0 0 18 0 1850.9275 P12270 P12270 2146 2163 TPR Nucleoprotein TPR yes yes 3 1.3949E-06 65.716 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 1 0.69096 0.71091 11.913 6 Median 0.73594 0.71963 NaN 1 0 Median 1.0443 0.87987 NaN 1 0 Median 0.66157 0.70231 3.5394 3 2 Median 0.69999 0.60902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59259000 31903000 27356000 12925000 7259900 5665200 4900800 1715200 3185600 40535000 22455000 18080000 898280 472860 425420 0 0 0 0 0 0 32531 1978 34203 170222;170223;170224;170225;170226;170227 171564;171565;171566;171567;171568;171569;171570;171571;171572 171564 9 TDGFGIDTCR MNILNKVVTRHPDLKTDGFGIDTCRSMVAV HPDLKTDGFGIDTCRSMVAVMDSDTTGKLG K T D C R S 0 1 0 2 1 0 0 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 10 0 1140.487 A0A0C4DGQ5;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7EKD8;K7ELJ7;U3KPR7;K7EM73 A0A0C4DGQ5 136 145 CAPNS1 Calpain small subunit 1 yes no 2 0.032496 33.378 By MS/MS 1 1.2678 1.0777 NaN 1 Median NaN NaN NaN 0 0 Median 1.2678 1.0777 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1484700 661290 823370 0 0 0 1484700 661290 823370 0 0 0 0 0 0 0 0 0 0 0 0 32532 251 34204 170228 171573 171573 1 TDGKVFQFLNAK SGYKIYPGHGRRYARTDGKVFQFLNAKCES YARTDGKVFQFLNAKCESAFLSKRNPRQIN R T D A K C 1 0 1 1 0 1 0 1 0 0 1 2 0 2 0 0 1 0 0 1 0 0 12 1 1366.7245 C9JXB8;C9JNW5;P83731 C9JXB8 24 35 RPL24 60S ribosomal protein L24 yes no 3 0.0026475 38.021 By MS/MS By matching By MS/MS 1 1 1 1.0243 1.0213 17.565 3 Median 1.0045 1.0213 NaN 1 0 Median 1.0243 0.93835 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.233 1.3152 NaN 1 0 Median NaN NaN NaN 0 0 Median 18548000 9262700 9285400 10638000 5694500 4943600 1567700 705920 861830 0 0 0 0 0 0 6342300 2862300 3480000 0 0 0 32533 713 34205 170229;170230;170231 171574;171575;171576;171577 171576 4 TDHPEIGEGKPTPALSEEASSSSIR LSVPAPAVQPEESLKTDHPEIGEGKPTPAL PTPALSEEASSSSIRERPPEEVAARLAQQE K T D I R E 2 1 0 1 0 0 4 2 1 2 1 1 0 0 3 5 2 0 0 0 0 0 25 1 2594.246 Q16891 Q16891 171 195 IMMT MICOS complex subunit MIC60 yes yes 3;4 4.7011E-05 30.592 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.79761 0.74622 20.664 6 Median 0.67465 0.69199 35.034 2 0 Median 0.87139 0.87204 8.2918 2 0 Median NaN NaN NaN 0 0 Median 0.6925 0.65998 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77612 0.67711 NaN 1 0 Median 17324000 9806400 7518000 10561000 6127800 4432800 4067700 2168800 1898900 0 0 0 1237700 660360 577340 0 0 0 1458300 849410 608930 32534 3001 34206 170232;170233;170234;170235;170236;170237 171578;171579;171580 171580 3 TDIFGVEETAIGK GLDIESSLKQLAERRTDIFGVEETAIGKKI RRTDIFGVEETAIGKKIGEEEIQKPEEKVT R T D G K K 1 0 0 1 0 0 2 2 0 2 0 1 0 1 0 0 2 0 0 1 0 0 13 0 1378.698 Q15459 Q15459 474 486 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.0014914 70.1 By MS/MS By MS/MS By MS/MS 1 1 1 0.84163 0.90212 2.6713 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80338 0.88703 NaN 1 1 Median 1.0734 0.91746 NaN 1 0 Median 0.84163 0.87033 NaN 1 1 Median NaN NaN NaN 0 0 Median 11000000 5929200 5070800 0 0 0 0 0 0 4594900 2551800 2043100 2612200 1206500 1405700 3792900 2170900 1622000 0 0 0 32535 2954 34207 170238;170239;170240 171581;171582;171583 171581 3 TDIFGVEETAIGKK GLDIESSLKQLAERRTDIFGVEETAIGKKI RTDIFGVEETAIGKKIGEEEIQKPEEKVTW R T D K K I 1 0 0 1 0 0 2 2 0 2 0 2 0 1 0 0 2 0 0 1 0 0 14 1 1506.793 Q15459 Q15459 474 487 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.00031349 49.31 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1984 1.2123 18.868 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2965 1.4825 NaN 1 0 Median 0.99497 0.94778 NaN 1 0 Median 1.1443 1.2819 NaN 1 0 Median 1.2552 1.1465 NaN 1 0 Median 10447000 5098900 5348300 0 0 0 0 0 0 4025200 2006700 2018500 150570 63672 86897 6107800 2939700 3168100 163630 88873 74754 32536 2954 34208 170241;170242;170243;170244 171584;171585;171586 171586 3 TDIQIALPSGCYGR AYDYTIPPMEKAVVKTDIQIALPSGCYGRV KTDIQIALPSGCYGRVAPRSGLAAKHFIDV K T D G R V 1 1 0 1 1 1 0 2 0 2 1 0 0 0 1 1 1 0 1 0 0 0 14 0 1549.7559 H0YNW5;H0YKC5;P33316;H0YMM5;A0A0C4DGL3;H0YNJ9;H0YKI0;H0YMP1 H0YNW5 71 84 DUT Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial yes no 2 0.0017962 56.359 By MS/MS By MS/MS 1 1 0.91603 0.83276 0.24544 2 Median 0.83734 0.8342 NaN 1 1 Median 1.0021 0.83131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8133200 4162800 3970400 3924700 2015200 1909500 4208500 2147600 2060900 0 0 0 0 0 0 0 0 0 0 0 0 32537 1190 34209 170245;170246 171587;171588;171589 171588 3 TDITYPAGFMDVISIDK KICMQRFIKIDGKVRTDITYPAGFMDVISI ITYPAGFMDVISIDKTGENFRLIYDTKGRF R T D D K T 1 0 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 1 0 0 17 0 1884.9179 P62701 P62701 78 94 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 4.6406E-11 91.62 By MS/MS 2 1.081 0.89414 7.61 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.081 0.89414 7.61 2 2 Median 10687000 5581300 5106000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10687000 5581300 5106000 32538 2593 34210 170247;170248 171590;171591 171590 2 TDKTLVLLMGK KSTGGAPTFNVTVTKTDKTLVLLMGKEGVH TVTKTDKTLVLLMGKEGVHGGLINKKCYEM K T D G K E 0 0 0 1 0 0 0 1 0 0 3 2 1 0 0 0 2 0 0 1 0 0 11 1 1217.7053 P07737;K7EJ44 P07737 106 116 PFN1 Profilin-1 yes no 2;3 1.1545E-05 160.75 By MS/MS By MS/MS By MS/MS By matching By matching 9 5 7 1 2 1.1802 1.088 21.583 24 Median 1.0956 1.026 18.674 9 0 Median 1.2833 1.0192 15.802 5 0 Median 1.1848 1.2215 6.5714 7 0 Median 1.4635 1.3941 NaN 1 0 Median 1.6748 1.4174 48.705 2 0 Median NaN NaN NaN 0 0 Median 1201800000 553490000 648360000 905320000 419640000 485680000 200200000 90901000 109300000 93092000 41717000 51376000 1901100 761010 1140100 1326100 463900 862160 0 0 0 32539 1889 34211;34212 170249;170250;170251;170252;170253;170254;170255;170256;170257;170258;170259;170260;170261;170262;170263;170264;170265;170266;170267;170268;170269;170270;170271;170272 171592;171593;171594;171595;171596;171597;171598;171599;171600;171601;171602;171603;171604;171605;171606;171607;171608;171609;171610;171611;171612;171613;171614;171615;171616;171617;171618;171619;171620;171621;171622;171623;171624;171625;171626 171620 660 35 TDKTSTTGSILNLNLDR PKPFSPQLSAPITTKTDKTSTTGSILNLNL KTSTTGSILNLNLDRSKAEMDLKELSESVQ K T D D R S 0 1 2 2 0 0 0 1 0 1 3 1 0 0 0 2 4 0 0 0 0 0 17 1 1847.9589 Q9ULU4 Q9ULU4 506 522 ZMYND8 Protein kinase C-binding protein 1 no no 3 7.4918E-06 65.716 By MS/MS 1 0.98042 1.1111 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98042 1.1111 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9888400 5591900 4296500 0 0 0 0 0 0 9888400 5591900 4296500 0 0 0 0 0 0 0 0 0 32540 4328 34213 170273 171627 171627 1 TDKVFEVMLATDR HSELIHNLRKNGIIKTDKVFEVMLATDRSH IKTDKVFEVMLATDRSHYAKCNPYMDSPQS K T D D R S 1 1 0 2 0 0 1 0 0 0 1 1 1 1 0 0 2 0 0 2 0 0 13 1 1523.7654 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;F8WDT3;F8WAV5;F8WAX2 A0A0A0MRJ6 83 95 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 3 1.8818E-05 86.699 By MS/MS By MS/MS By matching 1 1 1 1.144 1.1723 10.832 3 Median 0.93906 0.97916 NaN 1 0 Median 1.2696 1.1892 NaN 1 0 Median 1.144 1.1723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23341000 12265000 11076000 20725000 11149000 9575900 1323300 541380 781960 1292100 574030 718080 0 0 0 0 0 0 0 0 0 32541 163 34214 170274;170275;170276 171628;171629;171630;171631 171629 4 TDKYGFLGGSQYSGSLESSIPVDVAR SMGSDSEINGLALRKTDKYGFLGGSQYSGS YSGSLESSIPVDVARQRELKWLDMFSNWDK K T D A R Q 1 1 0 2 0 1 1 4 0 1 2 1 0 1 1 5 1 0 2 2 0 0 26 1 2732.3293 Q4KMP7 Q4KMP7 304 329 TBC1D10B TBC1 domain family member 10B yes yes 3 0.0045499 23.675 By MS/MS 1 0.93005 1.0567 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93005 1.0567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3235400 1893000 1342400 0 0 0 0 0 0 3235400 1893000 1342400 0 0 0 0 0 0 0 0 0 32542 3022 34215 170277 171632 171632 1 TDLAAVPASR ITNGPDADVLIVYAKTDLAAVPASRGITAF IVYAKTDLAAVPASRGITAFIVEKGMPGFS K T D S R G 3 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 10 0 999.53491 A0A0S2Z4K7;A0A0A0MT83;P26440;H0YLC3;H7C4G6;H0YKV0;H0YN10 A0A0S2Z4K7 181 190 IVD Isovaleryl-CoA dehydrogenase, mitochondrial yes no 2 0.003121 57.859 By MS/MS By MS/MS By matching 1 1 1 0.72032 0.67079 6.9643 3 Median 0.65686 0.65394 NaN 1 0 Median 0.77018 0.67079 NaN 1 1 Median 0.72032 0.7457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10472000 6191700 4280600 3619000 2136000 1483000 6090800 3547200 2543600 762460 508530 253920 0 0 0 0 0 0 0 0 0 32543 187 34216 170278;170279;170280 171633;171634;171635 171633 3 TDLDDDITALK AIKAKIMAKKRSTIKTDLDDDITALKQRSF STIKTDLDDDITALKQRSFVDAEVDVTRDI K T D L K Q 1 0 0 4 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1218.598 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3 Q6P1J9 199 209 CDC73 Parafibromin yes no 2 0.0016501 57.859 By matching By MS/MS By matching 1 1 1 1.4245 1.2018 39.106 3 Median 2.1459 2.0337 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96566 0.94701 NaN 1 0 Median 1.4245 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14505000 6936000 7568800 3345700 1516200 1829500 0 0 0 8856300 4467400 4388900 2302800 952460 1350300 0 0 0 0 0 0 32544 3150 34217 170281;170282;170283 171636 171636 1 TDLEIIQR T D Q R 0 1 0 1 0 1 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 8 0 986.53966 REV__E9PHM6 yes no 2 0.039331 37.021 By MS/MS 1 1.1359 0.98776 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1359 0.98776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 715760 316620 399140 0 0 0 0 0 0 0 0 0 715760 316620 399140 0 0 0 0 0 0 + 32545 4518 34218 170284 171637 171637 1 TDLEKDIISDTSGDFR QELQEINRVYKEMYKTDLEKDIISDTSGDF DLEKDIISDTSGDFRKLMVALAKGRRAEDG K T D F R K 0 1 0 4 0 0 1 1 0 2 1 1 0 1 0 2 2 0 0 0 0 0 16 1 1810.8585 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 153 168 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3 2.5922E-09 113.77 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 3 2 3 1 2 1.1289 1.1133 12.421 15 Median 1.1076 1.1061 12.206 4 1 Median 1.217 1.1133 3.0468 3 0 Median 1.1513 1.2473 1.1876 2 0 Median 1.205 1.0777 9.9106 3 0 Median 1.0628 1.1478 NaN 1 0 Median 0.96258 0.87817 12.695 2 0 Median 95942000 42908000 53034000 30821000 14181000 16640000 7203900 3578000 3625900 46319000 19750000 26569000 8537400 3721200 4816200 2448400 1335700 1112800 612020 341720 270300 32546 1885 34219 170285;170286;170287;170288;170289;170290;170291;170292;170293;170294;170295;170296;170297;170298;170299;170300 171638;171639;171640;171641;171642;171643;171644;171645;171646;171647;171648;171649 171646 12 TDLEKDIISDTSGDFRK QELQEINRVYKEMYKTDLEKDIISDTSGDF LEKDIISDTSGDFRKLMVALAKGRRAEDGS K T D R K L 0 1 0 4 0 0 1 1 0 2 1 2 0 1 0 2 2 0 0 0 0 0 17 2 1938.9535 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YNA0;H0YN52 P07355 153 169 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2;3;4 6.2825E-11 103.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 2 5 6 2 2 1.1721 1.1868 19.812 24 Median 1.0881 1.1366 22.473 7 0 Median 1.1343 1.2667 17.569 2 0 Median 1.1589 1.3124 22.665 5 1 Median 1.2239 1.2244 6.3985 6 0 Median 1.3157 1.5192 4.1497 2 0 Median 1.0148 0.93514 24.138 2 0 Median 550420000 242890000 307540000 180870000 81280000 99588000 61507000 28899000 32608000 193280000 82097000 111190000 84205000 36762000 47442000 24351000 10952000 13400000 6206300 2895900 3310300 32547 1885 34220 170301;170302;170303;170304;170305;170306;170307;170308;170309;170310;170311;170312;170313;170314;170315;170316;170317;170318;170319;170320;170321;170322;170323;170324 171650;171651;171652;171653;171654;171655;171656;171657;171658;171659;171660;171661;171662;171663;171664;171665;171666;171667;171668;171669;171670 171663 21 TDLEMQIEGLKEELAYLKK INGLRRVLDELTLARTDLEMQIEGLKEELA MQIEGLKEELAYLKKNHEEEISTLRGQVGG R T D K K N 1 0 0 1 0 1 4 1 0 1 4 3 1 0 0 0 1 0 1 0 0 0 19 2 2250.1817 CON__P08727;P08727;K7EMS3;C9JM50 CON__P08727 198 216 KRT19 Keratin, type I cytoskeletal 19 yes no 3 3.4569E-07 59.872 By MS/MS By matching By matching By matching 1 1 1 2 1.0406 1.0684 23.686 5 Median NaN NaN NaN 0 0 Median 1.0406 1.0305 NaN 1 0 Median 0.96739 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64648 0.7042 NaN 1 0 Median 1.3417 1.2301 12.427 2 0 Median 17810000 7720000 10090000 0 0 0 11413000 4948900 6464300 2261500 1143600 1117900 0 0 0 846330 467940 378380 3289100 1159500 2129500 + 32548 752 34221 170325;170326;170327;170328;170329 171671;171672 171672 2 TDLFYER DRDGCPKIVNLGSSKTDLFYERKKYGFKKR IVNLGSSKTDLFYERKKYGFKKR_______ K T D E R K 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 942.4447 Q7RTV0 Q7RTV0 96 102 PHF5A PHD finger-like domain-containing protein 5A yes yes 2 0.002489 116.54 By matching By matching By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 2 1.1572 1.0353 24.833 8 Median 1.5058 1.4099 NaN 1 0 Median 1.202 1.0219 NaN 1 0 Median 1.0285 1.0399 NaN 1 0 Median 1.3132 1.0308 NaN 1 0 Median 1.0806 1.1204 1.5896 2 0 Median 0.98577 0.75147 34.979 2 0 Median 87163000 42758000 44405000 14569000 6625500 7943400 10903000 5169700 5733000 24238000 12045000 12193000 7719200 3311000 4408100 9123300 4371500 4751800 20612000 11236000 9375500 32549 3234 34222 170330;170331;170332;170333;170334;170335;170336;170337 171673;171674;171675;171676;171677;171678 171674 6 TDLLLEPYNK HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS GEHLKTDLLLEPYNKYRFLSNGHVTIPGQQ K T D N K Y 0 0 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 10 0 1204.634 P35579 P35579 290 299 MYH9 Myosin-9 yes yes 2 0.00033566 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 2 2 0.92927 0.90927 20.25 11 Median 0.74201 0.77913 40.041 2 0 Median 0.89417 0.78633 6.2835 2 0 Median 0.94649 1.0265 32.65 2 0 Median 1.0004 0.90927 NaN 1 0 Median 0.91788 0.95453 5.8272 2 0 Median 1.0167 0.86023 13.442 2 0 Median 195780000 95115000 100670000 93866000 42760000 51106000 59257000 29982000 29274000 21105000 12055000 9049800 1407300 682370 724900 17477000 8368400 9109100 2668900 1267100 1401800 32550 2244 34223 170338;170339;170340;170341;170342;170343;170344;170345;170346;170347;170348 171679;171680;171681;171682;171683;171684;171685;171686;171687;171688;171689;171690 171687 12 TDLLLEPYNKYR HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK K T D Y R F 0 1 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 2 0 0 0 12 1 1523.7984 P35579 P35579 290 301 MYH9 Myosin-9 yes yes 3 0.00067413 73.848 By MS/MS 1 0.75133 0.75335 NaN 1 Median 0.75133 0.75335 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15791000 8460900 7329800 15791000 8460900 7329800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32551 2244 34224 170349 171691 171691 1 TDLNPDNLQGGDDLDPNYVLSSR IEDRHGGYKPSDEHKTDLNPDNLQGGDDLD QGGDDLDPNYVLSSRVRTGRSIRGFCLPPH K T D S R V 0 1 3 5 0 1 0 2 0 0 4 0 0 0 2 2 1 0 1 1 0 0 23 0 2517.1619 P12277;G3V4N7;G3V461 P12277 108 130 CKB Creatine kinase B-type yes no 2;3 5.6338E-16 65.833 By MS/MS By MS/MS By MS/MS 2 2 1 0.52463 0.56173 11.934 5 Median 0.52438 0.52182 0.43068 2 0 Median 0.75971 0.6561 5.6388 2 0 Median 0.51834 0.56173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31173000 18777000 12396000 18911000 11522000 7388800 7127800 4017700 3110000 5135000 3237500 1897600 0 0 0 0 0 0 0 0 0 32552 1980 34225 170350;170351;170352;170353;170354 171692;171693;171694;171695;171696;171697;171698;171699 171693 8 TDLSNVQELLQFVK FYPQLKPWVHYIPVKTDLSNVQELLQFVKA KTDLSNVQELLQFVKANDDVAQEIAERGSQ K T D V K A 0 0 1 1 0 2 1 0 0 0 3 1 0 1 0 1 1 0 0 2 0 0 14 0 1632.8723 Q8NBL1 Q8NBL1 316 329 POGLUT1 Protein O-glucosyltransferase 1 yes yes 2 0.0023845 43.308 By matching By MS/MS 1 2 1.2143 1.1994 22.665 3 Plateau NaN NaN NaN 0 0 Median 0.97291 0.84826 NaN 1 0 Median 1.1886 1.2484 5.6562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7103400 3199000 3904400 0 0 0 1229700 633250 596480 5873700 2565700 3307900 0 0 0 0 0 0 0 0 0 32553 3405 34226 170355;170356;170357 171700 171700 1 TDLVPAFQNLMK KFTELQKAVGPEITKTDLVPAFQNLMKDCE ITKTDLVPAFQNLMKDCEAEVRAAASHKVK K T D M K D 1 0 1 1 0 1 0 0 0 0 2 1 1 1 1 0 1 0 0 1 0 0 12 0 1375.717 P30153;B3KQV6;C9J9C1 P30153 281 292 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0001975 85.676 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 0.93627 0.83684 12.086 8 Median 0.90751 0.87427 0.91639 2 0 Median 0.94294 0.79887 7.7564 2 0 Median 0.9981 0.99624 NaN 1 0 Median 0.94909 0.82045 1.6101 2 0 Median NaN NaN NaN 0 0 Median 0.80303 0.65756 NaN 1 0 Median 34395000 17654000 16741000 14830000 7699000 7131000 12554000 6459900 6094200 5778200 2928500 2849700 962380 446280 516110 0 0 0 270190 120550 149630 32554 2190 34227 170358;170359;170360;170361;170362;170363;170364;170365 171701;171702;171703;171704;171705;171706 171705 6 TDMDNQIVVSDYAQMDR KAKIGLIQFCLSAPKTDMDNQIVVSDYAQM MDNQIVVSDYAQMDRVLREERAYILNLVKQ K T D D R V 1 1 1 4 0 2 0 0 0 1 0 0 2 0 0 1 1 0 1 2 0 0 17 0 1999.8615 P50991 P50991 258 274 CCT4 T-complex protein 1 subunit delta yes yes 2 7.8372E-12 137.84 By MS/MS By matching By MS/MS By matching 3 4 2 3 1.1403 1.0332 14.842 12 Median 1.0878 1.0559 3.0658 3 0 Median 1.1314 0.99667 18.955 4 0 Median 1.2367 1.2603 3.6028 2 0 Median 1.133 0.98441 3.6216 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51872000 23221000 28650000 31700000 14435000 17266000 2724600 1339400 1385200 15213000 6401900 8811000 2233600 1045100 1188500 0 0 0 0 0 0 32555 2424 34228;34229 170366;170367;170368;170369;170370;170371;170372;170373;170374;170375;170376;170377 171707;171708;171709;171710;171711;171712;171713;171714;171715;171716 171716 1132;1133 10 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR YGGGSEGGRAPKRLKTDNAGDQHGGGGGGG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T D I R G 5 1 2 4 0 1 1 17 3 1 0 1 0 0 3 1 2 0 1 2 0 0 45 1 4037.7985 P14866 P14866 63 107 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 4;5 3.1433E-10 50.393 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 3 0.56932 0.59092 13.672 9 Median 0.87045 0.87905 NaN 1 0 Median 0.64445 0.59092 NaN 1 0 Median 0.52791 0.58859 6.8838 3 1 Median 0.66102 0.60609 6.9055 2 0 Median 0.56336 0.59684 3.844 2 0 Median NaN NaN NaN 0 0 Median 86241000 55539000 30702000 2957200 1520300 1436800 2882100 1645700 1236400 28502000 20887000 7615300 9972700 5679200 4293600 41927000 25807000 16120000 0 0 0 32556 2011 34230 170378;170379;170380;170381;170382;170383;170384;170385;170386;170387 171717;171718;171719;171720;171721;171722;171723;171724;171725;171726;171727;171728;171729 171720 13 TDNVEVTDGENKEIK EIPFLNEQTNSKIEKTDNVEVTDGENKEIK TDNVEVTDGENKEIKVKVDNISESTDKSAE K T D I K V 0 0 2 2 0 0 3 1 0 1 0 2 0 0 0 0 2 0 0 2 0 0 15 1 1689.8057 Q92576;E7ER40 Q92576 1510 1524 PHF3 PHD finger protein 3 yes no 3 0.031796 17.917 By MS/MS 1 0.8458 0.97513 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8458 0.97513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4028300 2196800 1831400 0 0 0 0 0 0 4028300 2196800 1831400 0 0 0 0 0 0 0 0 0 32557 3539 34231 170388 171730;171731 171731 2 TDPEKGEIEDYR ISSAVAGVAIGLVTKTDPEKGEIEDYRLLT VTKTDPEKGEIEDYRLLTDILGIEDYNGDM K T D Y R L 0 1 0 2 0 0 3 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 12 1 1450.6576 Q8TCS8 Q8TCS8 517 528 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 3 0.00039947 55.261 By MS/MS By MS/MS 1 1 1.0774 1.0806 25.624 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84875 0.9015 NaN 1 0 Median 1.3676 1.2952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4894200 2529600 2364600 0 0 0 0 0 0 2739400 1609700 1129800 2154700 919930 1234800 0 0 0 0 0 0 32558 3467 34232 170389;170390 171732;171733 171733 2 TDPSILGGMIVR KSFLSQGQVLKLEAKTDPSILGGMIVRIGE EAKTDPSILGGMIVRIGEKYVDMSVKTKIQ K T D V R I 0 1 0 1 0 0 0 2 0 2 1 0 1 0 1 1 1 0 0 1 0 0 12 0 1257.6751 P48047 P48047 177 188 ATP5O ATP synthase subunit O, mitochondrial yes yes 2 0.00062718 65.305 By MS/MS By matching By MS/MS 1 1 2 0.96518 0.8703 17.232 4 Median 0.88012 0.83882 NaN 1 0 Median 1.0051 0.85041 NaN 1 0 Median 1.0071 1.0376 21.595 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 234110000 120280000 113830000 195360000 100450000 94911000 29425000 14452000 14973000 9322100 5381300 3940800 0 0 0 0 0 0 0 0 0 32559 2358 34233 170391;170392;170393;170394 171734;171735;171736 171735 3 TDPSSLGATSASFNFGK EDTPDKKMEVASEKKTDPSSLGATSASFNF PSSLGATSASFNFGKKVDSSVLGSLSSVPL K T D G K K 2 0 1 1 0 0 0 2 0 0 1 1 0 2 1 4 2 0 0 0 0 0 17 0 1685.7897 Q9UKX7 Q9UKX7 259 275 NUP50 Nuclear pore complex protein Nup50 yes yes 2 2.1298E-05 64.55 By MS/MS 1 0.95647 0.96538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95647 0.96538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4412400 2158500 2253800 0 0 0 0 0 0 4412400 2158500 2253800 0 0 0 0 0 0 0 0 0 32560 4317 34234 170395 171737;171738 171737 2 TDPSVRPMHER RNKNRESYEVSLTQKTDPSVRPMHERVPKK LTQKTDPSVRPMHERVPKKE__________ K T D E R V 0 2 0 1 0 0 1 0 1 0 0 0 1 0 2 1 1 0 0 1 0 0 11 1 1323.6354 D6RDK6;D6RBN5;Q9NX40 D6RDK6 164 174 OCIAD1 OCIA domain-containing protein 1 yes no 3 0.049733 17.809 By MS/MS By matching By matching By matching 1 1 1 1 0.82558 0.82579 13.354 4 Median 0.75549 0.81334 NaN 1 0 Median 1.1508 1.0592 NaN 1 0 Median 0.80329 0.83844 NaN 1 0 Median 0.84848 0.79179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1151600 540310 611290 412410 215770 196640 305140 114020 191120 119090 61061 58026 314960 149470 165490 0 0 0 0 0 0 32561 815 34235 170396;170397;170398;170399 171739 171739 1 TDPTTLTDEEINR SDIQIRRLKRLGIEKTDPTTLTDEEINRFA EKTDPTTLTDEEINRFARLDIDPETITWQR K T D N R F 0 1 1 2 0 0 2 0 0 1 1 0 0 0 1 0 4 0 0 0 0 0 13 0 1503.7053 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 505 517 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 3.1391E-31 213.8 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 0.92725 0.85777 20.51 7 Median 0.66042 0.6399 29.601 2 1 Median 1.0257 0.85777 6.3773 3 1 Median 0.82341 0.8734 NaN 1 0 Median 1.135 0.96413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85638000 44661000 40977000 52793000 28188000 24605000 14577000 6990400 7586300 13685000 7240400 6445000 4582700 2242400 2340200 0 0 0 0 0 0 32562 1968 34236 170400;170401;170402;170403;170404;170405;170406 171740;171741;171742;171743;171744;171745;171746;171747;171748;171749 171743 10 TDQAFVTLTTNDAYAK ______________________________ DQAFVTLTTNDAYAKGALVLGSSLKQHRTT M T D A K G 3 0 1 2 0 1 0 0 0 0 1 1 0 1 0 0 4 0 1 1 0 0 16 0 1757.8472 P46976;C9JQ42;G5E9W8 P46976 2 17 GYG1 Glycogenin-1 yes no 2 0.00013773 63.944 By MS/MS By matching 1 1 1.6882 1.5738 10.92 2 Median 1.7016 1.7002 NaN 1 0 Median 1.6749 1.4569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8609900 3198900 5411000 7290200 2665300 4624900 1319700 533640 786090 0 0 0 0 0 0 0 0 0 0 0 0 32563 2351 34237 170407;170408 171750;171751 171750 2 TDQFPLFLIIMGK RHFGSVVAQTIRTQKTDQFPLFLIIMGKRS QKTDQFPLFLIIMGKRSSNEVLNVIQGNTT K T D G K R 0 0 0 1 0 1 0 1 0 2 2 1 1 2 1 0 1 0 0 0 0 0 13 0 1521.8265 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 445 457 FAF1 FAS-associated factor 1 yes no 2 0.025504 28.013 By MS/MS By matching 1 1 0.93097 0.86892 9.4472 2 Median 0.93762 0.92894 NaN 1 0 Median 0.92438 0.81277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1833300 931730 901600 1767400 898720 868690 65923 33010 32913 0 0 0 0 0 0 0 0 0 0 0 0 32564 575 34238 170409;170410 171752 171752 1 TDRGGDSIGETPTPGASK RDTPGHGSGWAETPRTDRGGDSIGETPTPG GGDSIGETPTPGASKRKSRWDETPASQMGG R T D S K R 1 1 0 2 0 0 1 4 0 1 0 1 0 0 2 2 3 0 0 0 0 0 18 1 1744.8228 O75533 O75533 316 333 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.0084999 23.853 By matching By MS/MS 1 1 0.86573 0.98677 4.3429 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88909 1.0175 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84298 0.95693 NaN 1 0 Median NaN NaN NaN 0 0 Median 2507200 1313400 1193800 0 0 0 0 0 0 761840 412080 349760 0 0 0 1745400 901350 844040 0 0 0 32565 1683 34239 170411;170412 171753 171753 1 TDRYTIHSQLEHLQSK ______________________________ DRYTIHSQLEHLQSKYIGTGHADTTKWEWL M T D S K Y 0 1 0 1 0 2 1 0 2 1 2 1 0 0 0 2 2 0 1 0 0 0 16 1 1954.9861 Q9BWJ5 Q9BWJ5 2 17 SF3B5 Splicing factor 3B subunit 5 yes yes 3;4 4.1578E-05 72.583 By matching By matching By MS/MS 1 2 2 1.0694 1.1053 14.234 5 Median 0.90123 0.88374 NaN 1 0 Median 1.1456 1.0115 20.327 2 0 Median 1.0861 1.1236 2.3115 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63485000 31097000 32387000 7659700 3753900 3905800 12730000 6143900 6586100 43095000 21199000 21895000 0 0 0 0 0 0 0 0 0 32566 3873 34240 170413;170414;170415;170416;170417 171754;171755;171756;171757 171754 4 TDSDIIAK GFPFYDKPMRIQYAKTDSDIIAKMKGTFVE MRIQYAKTDSDIIAKMKGTFVERDRKREKR K T D A K M 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 8 0 861.44436 P09012;M0R268;M0R221;M0R2B8;M0QZG7;M0QXK2 P09012 89 96 SNRPA U1 small nuclear ribonucleoprotein A yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1 1.0364 0.97869 4.9065 5 Median 0.96997 0.94945 NaN 1 0 Median 1.2667 1.0674 NaN 1 0 Median 1.0364 0.99437 NaN 1 0 Median 1.1676 0.97869 NaN 1 0 Median 0.94448 0.94531 NaN 1 1 Median NaN NaN NaN 0 0 Median 30771000 14243000 16528000 1475000 704770 770220 2072600 822090 1250600 5789900 2816600 2973300 10267000 4550100 5717300 11166000 5349100 5816500 0 0 0 32567 1910 34241 170418;170419;170420;170421;170422;170423;170424 171758;171759;171760;171761;171762;171763;171764;171765 171764 8 TDSDIISK GFPFYGKPMRIQYAKTDSDIISKMRGTFAD MRIQYAKTDSDIISKMRGTFADKEKKKEKK K T D S K M 0 0 0 2 0 0 0 0 0 2 0 1 0 0 0 2 1 0 0 0 0 0 8 0 877.43928 P08579 P08579 86 93 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 2 0.021409 60.436 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0006 0.93825 17.788 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0006 0.93825 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0566 1.0789 NaN 1 0 Median 0.9038 0.75787 NaN 1 0 Median 16461000 7743600 8717400 0 0 0 0 0 0 10115000 4624800 5489900 0 0 0 5610300 2723400 2886800 736050 395380 340670 32568 1904 34242 170425;170426;170427;170428 171766;171767;171768;171769;171770 171768 5 TDSQDLVASFR YIYTGNAKGKILVLKTDSQDLVASFRVTTG LVLKTDSQDLVASFRVTTGTSNTTAIKSIE K T D F R V 1 1 0 2 0 1 0 0 0 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1237.5939 Q15291 Q15291 180 190 RBBP5 Retinoblastoma-binding protein 5 yes yes 2 1.5102E-06 112.75 By MS/MS By MS/MS 2 2 1.1453 1.0574 3.7718 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0643 1.086 NaN 1 0 Median 1.2325 1.0296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10784000 4899200 5885200 0 0 0 0 0 0 9478800 4373800 5105000 1305600 525390 780250 0 0 0 0 0 0 32569 2939 34243 170429;170430;170431;170432 171771;171772;171773;171774;171775 171773 5 TDSQLQGQVLFR LWTNMAISSVAEFRRTDSQLQGQVLFRHLA FRRTDSQLQGQVLFRHLAGLAELLPESRRQ R T D F R H 0 1 0 1 0 3 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 12 0 1390.7205 Q9NU22 Q9NU22 3130 3141 MDN1 Midasin yes yes 2 1.1492E-65 241.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.0508 1.0655 44.304 6 Median 1.0206 1.0033 NaN 1 0 Median 0.95692 0.85022 90.666 2 1 Median 1.0819 1.1316 NaN 1 0 Median 1.5317 1.3333 NaN 1 0 Median 0.87025 0.91101 NaN 1 0 Median NaN NaN NaN 0 0 Median 55690000 26095000 29595000 9450300 4847800 4602500 8442200 3763500 4678700 34266000 15989000 18277000 1553900 691820 862090 1978000 803440 1174600 0 0 0 32570 4112 34244 170433;170434;170435;170436;170437;170438 171776;171777;171778;171779;171780;171781;171782 171779 7 TDSTSDGRPAWMR DEDDLAYAETEKKTRTDSTSDGRPAWMRTL TRTDSTSDGRPAWMRTLHTTASNWLHLIPQ R T D M R T 1 2 0 2 0 0 0 1 0 0 0 0 1 0 1 2 2 1 0 0 0 0 13 1 1478.6572 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4366 4378 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.00079187 47.712 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.2023 1.1958 10.186 4 Median 1.0421 1.1325 NaN 1 0 Median 1.3471 1.2626 NaN 1 0 Median 1.2379 1.3605 NaN 1 0 Median 1.1678 1.0883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16983000 6787200 10195000 3313000 1563900 1749100 7069800 2050400 5019400 4138100 2036800 2101300 2461700 1136100 1325600 0 0 0 0 0 0 32571 2865 34245 170439;170440;170441;170442 171783;171784 171784 2 TDSVIIADQTPTPTR HKHKHEMTLKFGPARTDSVIIADQTPTPTR TDSVIIADQTPTPTRFLKNCEEVGLFNELA R T D T R F 1 1 0 2 0 1 0 0 0 2 0 0 0 0 2 1 4 0 0 1 0 0 15 0 1613.8261 P17544;K7ELQ4;K7ESA4 P17544 42 56 ATF7 Cyclic AMP-dependent transcription factor ATF-7 yes no 2 1.7664E-10 117.09 By MS/MS 1 1.7025 1.7428 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7025 1.7428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6106600 2672700 3433800 0 0 0 0 0 0 6106600 2672700 3433800 0 0 0 0 0 0 0 0 0 32572 2042 34246 170443 171785 171785 1 TDTDLYEFAK PHEYKFPKNVNWEYKTDTDLYEFAKCKAYP NWEYKTDTDLYEFAKCKAYPTSVCFSPDGK K T D A K C 1 0 0 2 0 0 1 0 0 0 1 1 0 1 0 0 2 0 1 0 0 0 10 0 1201.5503 Q96BP3;F5H7P7;D6R9Q1;H0Y8N5 Q96BP3 269 278 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0031947 57.598 By MS/MS 1 0.97138 1.0196 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97138 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5482000 2795500 2686500 0 0 0 0 0 0 5482000 2795500 2686500 0 0 0 0 0 0 0 0 0 32573 3609 34247 170444 171786;171787 171787 2 TDTESELDLISR RMFGIPVVVAVNAFKTDTESELDLISRLSR AFKTDTESELDLISRLSREHGAFDAVKCTH K T D S R L 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1377.6624 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 761 772 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 3.5722E-06 156.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 1 1.1164 1.011 23.79 10 Median 1.0572 1.0225 12.233 2 1 Median 1.2061 1.0263 7.6915 3 0 Plateau 0.95514 1.0129 NaN 1 0 Median 0.98844 0.85572 11.366 2 0 Median 1.8198 1.93 NaN 1 0 Median 1.2507 1.0194 NaN 1 0 Median 101100000 47730000 53365000 62665000 29607000 33057000 18504000 8138600 10365000 14367000 7568800 6798100 2153400 1013900 1139500 2453100 950110 1503000 953390 451680 501710 32574 1968 34248 170445;170446;170447;170448;170449;170450;170451;170452;170453;170454 171788;171789;171790;171791;171792;171793;171794;171795;171796;171797;171798 171790 11 TDTGEPMGR QYAWESSAGGSFTVRTDTGEPMGRGTKVIL GSFTVRTDTGEPMGRGTKVILHLKEDQTEY R T D G R G 0 1 0 1 0 0 1 2 0 0 0 0 1 0 1 0 2 0 0 0 0 0 9 0 962.41274 P07900 P07900 174 182 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.00051347 118.74 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0011 0.96369 14.007 4 Median 1.0273 0.98491 NaN 1 0 Median 0.97563 0.84323 NaN 1 0 Median 0.91568 0.94292 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1344 1.1808 NaN 1 0 Median NaN NaN NaN 0 0 Median 15194000 7678600 7515200 4800000 2420400 2379600 10012000 5082300 4929900 225870 101370 124500 0 0 0 155820 74552 81265 0 0 0 32575 1894 34249 170455;170456;170457;170458 171799;171800;171801;171802;171803;171804;171805 171805 7 TDTLEDLFPTTK DALIDSMSLAKKDEKTDTLEDLFPTTKIPN DEKTDTLEDLFPTTKIPNPRFQRLFQCLLH K T D T K I 0 0 0 2 0 0 1 0 0 0 2 1 0 1 1 0 4 0 0 0 0 0 12 0 1379.682 P13010 P13010 470 481 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 3.0793E-06 132.78 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 1.0415 0.96369 25.745 8 Median 0.98901 0.89907 NaN 1 0 Median 1.1027 0.96369 3.8854 2 1 Median 0.91194 0.95154 8.44 2 0 Median 1.1514 0.99611 43.823 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83924000 39817000 44107000 10799000 5602700 5196100 16122000 7502300 8619500 34744000 16696000 18049000 22259000 10016000 12243000 0 0 0 0 0 0 32576 1986 34250 170459;170460;170461;170462;170463;170464;170465;170466 171806;171807;171808;171809;171810;171811;171812;171813;171814;171815;171816;171817;171818;171819;171820;171821;171822;171823;171824 171811 19 TDTNVSKPSFAAESVGQSAEPPKPSVEPALQQHR KLVYVDLLREEPDAKTDTNVSKPSFAAESV EPPKPSVEPALQQHRDFIALREELGRISDF K T D H R D 4 1 1 1 0 3 3 1 1 0 1 2 0 1 5 5 2 0 0 3 0 0 34 2 3588.7809 Q6W2J9;H7BYY2;A1A564 Q6W2J9 817 850 BCOR BCL-6 corepressor yes no 4;5 8.6421E-14 67.809 By MS/MS 3 0.31856 0.42087 81.892 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31856 0.42087 81.892 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47298000 36271000 11027000 0 0 0 0 0 0 47298000 36271000 11027000 0 0 0 0 0 0 0 0 0 32577 3191 34251 170467;170468;170469 171825;171826;171827 171825 3 TDTVLILCR LLKPISVEGSSKKVKTDTVLILCRKKVENT SSKKVKTDTVLILCRKKVENTRWDYLTQVE K T D C R K 0 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 2 0 0 1 0 0 9 0 1089.5852 Q9HB71 Q9HB71 147 155 CACYBP Calcyclin-binding protein yes yes 2 0.0036742 63.48 By MS/MS 1 1.2883 1.091 NaN 1 Median NaN NaN NaN 0 0 Median 1.2883 1.091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3051900 1299100 1752800 0 0 0 3051900 1299100 1752800 0 0 0 0 0 0 0 0 0 0 0 0 32578 4016 34252 170470 171828 171828 1 TDTYVTDNGDGTYR GNHVTARVLNPSGAKTDTYVTDNGDGTYRV KTDTYVTDNGDGTYRVQYTAYEEGVHLVEV K T D Y R V 0 1 1 3 0 0 0 2 0 0 0 0 0 0 0 0 4 0 2 1 0 0 14 0 1576.6641 Q14315 Q14315 1300 1313 FLNC Filamin-C yes yes 2 2.0846E-43 226.71 By matching By MS/MS By MS/MS 2 2 1 0.96294 0.84175 8.3533 5 Median 0.90432 0.90349 10.011 2 0 Median 0.98092 0.80348 5.4414 2 0 Median NaN NaN NaN 0 0 Median 1.0169 0.88515 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23774000 11082000 12691000 6499000 2578900 3920200 15758000 7788000 7969700 0 0 0 1516800 715210 801600 0 0 0 0 0 0 32579 2871 34253 170471;170472;170473;170474;170475 171829;171830;171831 171829 3 TDVAVQIISNIYHNFPEQR QPGLTMVVGPPGTGKTDVAVQIISNIYHNF VQIISNIYHNFPEQRTLIVTHSNQALNQLF K T D Q R T 1 1 2 1 0 2 1 0 1 3 0 0 0 1 1 1 1 0 1 2 0 0 19 0 2243.1335 O60306 O60306 830 848 AQR Intron-binding protein aquarius yes yes 3 0.015477 18.538 By MS/MS By MS/MS 1 1 0.78542 0.84954 8.2765 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73064 0.80125 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84431 0.90074 NaN 1 0 Median NaN NaN NaN 0 0 Median 3679100 2073400 1605700 0 0 0 0 0 0 2561200 1495800 1065400 0 0 0 1117900 577610 540260 0 0 0 32580 1611 34254 170476;170477 171832;171833;171834;171835 171835 4 TDVDVSLPK SMPDVGLNLKAPKLKTDVDVSLPKVEGDLK KAPKLKTDVDVSLPKVEGDLKGPEIDVKAP K T D P K V 0 0 0 2 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 9 0 972.51278 Q09666 Q09666 1595 1603 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.06407 27.254 By MS/MS 1 1.0372 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0372 1.0065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3182700 1557300 1625400 0 0 0 0 0 0 0 0 0 3182700 1557300 1625400 0 0 0 0 0 0 32581 2749 34255 170478 171836 171836 1 TDVLTGLSIR QEQEIDGKSLLLMQRTDVLTGLSIRLGPAL LLMQRTDVLTGLSIRLGPALKIYEHHIKVL R T D I R L 0 1 0 1 0 0 0 1 0 1 2 0 0 0 0 1 2 0 0 1 0 0 10 0 1073.6081 Q6SPF0;E9PIW9;F8WDT5 Q6SPF0 499 508 SAMD1 Atherin yes no 2 0.00050755 118.33 By MS/MS By matching 1 1 1.0472 0.98052 1.1288 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97004 0.98838 NaN 1 0 Median 1.1305 0.97272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11066000 5328500 5737600 0 0 0 0 0 0 10843000 5232600 5610400 222960 95819 127140 0 0 0 0 0 0 32582 3182 34256 170479;170480 171837 171837 1 TDVSTEHPPFYYNIHR RKSNEMITNLGKKQKTDVSTEHPPFYYNIH DVSTEHPPFYYNIHRHSIKGMNMPKLKKFL K T D H R H 0 1 1 1 0 0 1 0 2 1 0 0 0 1 2 1 2 0 2 1 0 0 16 0 1974.9224 Q7Z2T5 Q7Z2T5 625 640 TRMT1L TRMT1-like protein yes yes 3;4 0.00027523 38.995 By matching By MS/MS By matching 1 2 1 0.95069 0.93612 23.387 4 Median NaN NaN NaN 0 0 Median 1.2032 1.0981 NaN 1 0 Median 0.7167 0.76406 6.1555 2 0 Median 1.3663 1.177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15378000 8631800 6746500 0 0 0 668400 302030 366370 13437000 7717600 5719700 1272600 612170 660430 0 0 0 0 0 0 32583 3235 34257 170481;170482;170483;170484 171838;171839;171840;171841 171840 4 TDVVVNSVPLDLVLSR GLQMLLVKEGVQNAKTDVVVNSVPLDLVLS DVVVNSVPLDLVLSRGPLSKSLLEKAGPEL K T D S R G 0 1 1 2 0 0 0 0 0 0 3 0 0 0 1 2 1 0 0 5 0 0 16 0 1724.9672 Q460N5;H7C5R8 Q460N5 1028 1043 PARP14 Poly [ADP-ribose] polymerase 14 yes no 2 0.0010166 39.266 By MS/MS By matching 1 1 0.97345 0.93989 12.14 2 Median NaN NaN NaN 0 0 Median 1.0325 0.86257 NaN 1 0 Median 0.91774 1.0241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1581200 829710 751480 0 0 0 1184400 638000 546400 396780 191710 205070 0 0 0 0 0 0 0 0 0 32584 3017 34258 170485;170486 171842 171842 1 TDWDAGFKEGR MRYINGTRLDDRIIRTDWDAGFKEGRQYGR RIIRTDWDAGFKEGRQYGRGRSGGQVRDEY R T D G R Q 1 1 0 2 0 0 1 2 0 0 0 1 0 1 0 0 1 1 0 0 0 0 11 1 1280.5786 P52298;C9JQX9;B3KSB0 P52298 113 123 NCBP2 Nuclear cap-binding protein subunit 2 yes no 3 0.0018833 45.257 By matching By MS/MS By matching 1 1 1 1.0728 1.0634 13.256 3 Median 1.0728 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0069 1.0496 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1833 1.3288 NaN 1 0 Median NaN NaN NaN 0 0 Median 6664500 3474300 3190200 2364800 1195200 1169600 0 0 0 3315100 1760500 1554600 0 0 0 984490 518500 465990 0 0 0 32585 2450 34259 170487;170488;170489 171843 171843 1 TDWHMAFTGMSR TVGEVLEKSLLNVSRTDWHMAFTGMSRRQM VSRTDWHMAFTGMSRRQMIYSAARAIAGMY R T D S R R 1 1 0 1 0 0 0 1 1 0 0 0 2 1 0 1 2 1 0 0 0 0 12 0 1438.6122 Q96M27 Q96M27 410 421 PRRC1 Protein PRRC1 yes yes 3 0.0039644 35.204 By MS/MS By matching 1 1 1.3479 1.2714 2.7027 2 Median 1.2503 1.2473 NaN 1 0 Median 1.453 1.2959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3353100 1479900 1873200 3173500 1410200 1763300 179580 69692 109890 0 0 0 0 0 0 0 0 0 0 0 0 32586 3703 34260 170490;170491 171844 171844 1 TDWLDGK GPNTNGSQFFLTCDKTDWLDGKHVVFGEVT QFFLTCDKTDWLDGKHVVFGEVTEGLDVLR K T D G K H 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 7 0 833.39193 Q9UNP9;E9PKY5;E9PEQ6;P30405 Q9UNP9 255 261 PPIE;PPIF Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase F, mitochondrial no no 2 0.0113 80.462 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1583 1.0507 10.975 4 Median 1.0631 1.0054 NaN 1 0 Median 1.4141 1.2189 NaN 1 0 Median 1.1715 1.0981 NaN 1 0 Median 1.1452 0.9474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23044000 10786000 12258000 3746800 1900200 1846600 2459300 1105100 1354200 15271000 7147000 8123800 1567300 634210 933140 0 0 0 0 0 0 32587 4347;2192 34261 170492;170493;170494;170495 171845;171846;171847;171848 171845 4 TDWLDGKHVVFGHVK GPNTNGSQFFICTIKTDWLDGKHVVFGHVK TDWLDGKHVVFGHVKEGMDVVKKIESFGSK K T D V K E 0 0 0 2 0 0 0 2 2 0 1 2 0 1 0 0 1 1 0 3 0 0 15 1 1736.8998 P30405 P30405 161 175 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 3 0.0044142 27.029 By MS/MS By matching 1 1 0.8806 0.88062 23.736 2 Median 1.0423 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74401 0.74455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12190000 5963100 6227000 8825700 4178400 4647300 0 0 0 3364500 1784800 1579700 0 0 0 0 0 0 0 0 0 32588 2192 34262 170496;170497 171849;171850 171849 2 TDYIPLLDVDEK EAEAFDDVVGETVGKTDYIPLLDVDEKTGN VGKTDYIPLLDVDEKTGNSESKKKPCSETS K T D E K T 0 0 0 3 0 0 1 0 0 1 2 1 0 0 1 0 1 0 1 1 0 0 12 0 1419.7133 E7EVA0;P27816;H7C456;A0A0J9YVV8;A0A0J9YW37 E7EVA0 45 56 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.0047683 60.434 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.93149 0.85749 42.749 5 Median 0.96859 0.95819 15.702 2 1 Median 0.78633 0.68115 NaN 1 0 Median 1.8741 2.031 NaN 1 0 Median 0.93149 0.79397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9391300 4277000 5114300 4562800 2404100 2158700 648100 340160 307940 3800000 1340500 2459500 380400 192170 188230 0 0 0 0 0 0 32589 895 34263 170498;170499;170500;170501;170502 171851;171852;171853;171854;171855 171853 5 TDYMVGSYGPR KYIQHTYRKGVKIDKTDYMVGSYGPRAEEY KIDKTDYMVGSYGPRAEEYEFLTPVEEAPK K T D P R A 0 1 0 1 0 0 0 2 0 0 0 0 1 0 1 1 1 0 2 1 0 0 11 0 1244.5496 J3KTF8;J3QQX2;P52565;J3KRE2 J3KTF8 142 152 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2 0.00019847 103.7 By MS/MS By MS/MS By MS/MS 2 2 2 0.93435 0.88802 12.861 6 Median 0.93435 0.88802 6.0803 2 0 Median 1.2435 1.0525 14.044 2 0 Median 0.87033 0.8327 2.6115 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 166150000 78887000 87268000 129650000 61154000 68496000 22231000 9495300 12736000 14274000 8237600 6036300 0 0 0 0 0 0 0 0 0 32590 1336 34264;34265 170503;170504;170505;170506;170507;170508 171856;171857;171858;171859;171860;171861;171862;171863 171862 442 8 TDYNASVSVPDSSGPER GAVIGKGGKNIKALRTDYNASVSVPDSSGP YNASVSVPDSSGPERILSISADIETIGEIL R T D E R I 1 1 1 2 0 0 1 1 0 0 0 0 0 0 2 4 1 0 1 2 0 0 17 0 1779.7911 P61978;Q5T6W2 P61978 70 86 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2;3 4.9917E-64 231.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 9 11 10 14 0.83504 0.74525 16.669 52 Median 0.7998 0.77123 7.9638 4 0 Median 1.0021 0.85142 9.9994 6 0 Median 0.73179 0.71301 15.326 9 0 Median 0.94857 0.80711 16.003 10 0 Median 0.69303 0.69614 6.2199 9 0 Median 0.9024 0.75244 22.104 14 0 Median 2486900000 1358000000 1128900000 157480000 84355000 73125000 66819000 32714000 34105000 1192500000 667930000 524530000 457640000 228490000 229150000 478660000 276290000 202360000 133820000 68195000 65624000 32591 2565;3093 34266 170509;170510;170511;170512;170513;170514;170515;170516;170517;170518;170519;170520;170521;170522;170523;170524;170525;170526;170527;170528;170529;170530;170531;170532;170533;170534;170535;170536;170537;170538;170539;170540;170541;170542;170543;170544;170545;170546;170547;170548;170549;170550;170551;170552;170553;170554;170555;170556;170557;170558;170559;170560;170561;170562 171864;171865;171866;171867;171868;171869;171870;171871;171872;171873;171874;171875;171876;171877;171878;171879;171880;171881;171882;171883;171884;171885;171886;171887;171888;171889;171890;171891;171892;171893;171894;171895;171896;171897;171898;171899;171900;171901;171902;171903;171904;171905;171906;171907;171908;171909;171910;171911;171912;171913;171914;171915;171916;171917;171918;171919;171920;171921;171922;171923;171924;171925;171926;171927;171928;171929;171930;171931;171932;171933;171934;171935;171936;171937;171938;171939;171940;171941;171942;171943;171944;171945;171946;171947;171948;171949;171950;171951;171952;171953;171954;171955;171956;171957;171958;171959;171960;171961 171928 98 TDYNEPGTIPSAAR KAHNSVNKMGDRDLRTDYNEPGTIPSAARG RTDYNEPGTIPSAARGLDDTVSIASRSREV R T D A R G 2 1 1 1 0 0 1 1 0 1 0 0 0 0 2 1 2 0 1 0 0 0 14 0 1490.7001 Q96T58 Q96T58 76 89 SPEN Msx2-interacting protein yes yes 2 9.8552E-05 86.014 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 0.70764 0.64332 26.539 6 Median NaN NaN NaN 0 0 Median 0.911 0.76467 33.537 2 1 Median NaN NaN NaN 0 0 Median 0.67263 0.53076 NaN 1 0 Median 0.79407 0.80353 22.349 2 0 Median 0.66866 0.5476 NaN 1 0 Median 10824000 6242400 4581600 0 0 0 5567100 3348200 2218900 0 0 0 967820 539300 428520 3930000 2135200 1794700 359180 219700 139480 32592 3741 34267 170563;170564;170565;170566;170567;170568;170569 171962;171963;171964;171965;171966 171964 5 TEAAETTPMWQALK GNEPKASDEVPLAPRTEAAETTPMWQALKL RTEAAETTPMWQALKLLFCATGLQVSYLTW R T E L K L 3 0 0 0 0 1 2 0 0 0 1 1 1 0 1 0 3 1 0 0 0 0 14 0 1575.7603 Q8TB61 Q8TB61 98 111 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.06255 42.718 By MS/MS By matching 1 2 1.4881 1.3112 38.159 3 Median 2.4848 2.4673 NaN 1 0 Median 1.4522 1.2762 3.8273 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6059800 1450800 4608900 4103600 937850 3165700 1956200 512980 1443200 0 0 0 0 0 0 0 0 0 0 0 0 32593 3458 34268 170570;170571;170572 171967 171967 0 TEAASDPQHPAASEGAAAAAASPPLLR AEAATGEDASSPPPKTEAASDPQHPAASEG SEGAAAAAASPPLLRCLVLTGFGGYDKVKL K T E L R C 10 1 0 1 0 1 2 1 1 0 2 0 0 0 4 3 1 0 0 0 0 0 27 0 2556.2568 Q99536;K7ERT7 Q99536 23 49 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 3 8.0219E-08 54.259 By MS/MS By MS/MS 1 1 0.52893 0.54869 12.656 2 Median 0.50517 0.50172 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.55381 0.60006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11817000 7948200 3869100 7519800 4906800 2612900 0 0 0 4297600 3041400 1256200 0 0 0 0 0 0 0 0 0 32594 3750 34269 170573;170574 171968;171969 171968 2 TEADAEKTFEEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT EFKTEADAEKTFEEKQGTEIDGRSISLYYT K T E E K Q 2 0 0 1 0 0 4 0 0 0 0 2 0 1 0 0 2 0 0 0 0 0 12 1 1396.6358 P19338;H7BY16 P19338 438 449 NCL Nucleolin yes no 2;3 1.9481E-05 112.75 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 5 1.0873 1.0897 38.336 15 Median 1.1246 1.1832 10.601 4 1 Median NaN NaN NaN 0 0 Median 1.0873 1.2427 13.657 3 0 Median NaN NaN NaN 0 0 Median 1.1302 1.2662 14.54 3 0 Median 1.0105 0.9128 51.831 5 0 Median 45331000 22051000 23279000 12877000 5825700 7051800 0 0 0 5049700 2660900 2388900 0 0 0 14226000 6956400 7269100 13178000 6608500 6569700 32595 2063 34270 170575;170576;170577;170578;170579;170580;170581;170582;170583;170584;170585;170586;170587;170588;170589 171970;171971;171972;171973;171974;171975;171976;171977;171978;171979;171980;171981;171982;171983;171984;171985;171986;171987;171988;171989 171978 20 TEAEIAHIALETLEGHQR NKEMLAAACQMFLGKTEAEIAHIALETLEG EIAHIALETLEGHQRAIMAHMTVEEIYKDR K T E Q R A 3 1 0 0 0 1 4 1 2 2 2 0 0 0 0 0 2 0 0 0 0 0 18 0 2017.0229 O75955;A0A140T9R1;A2AB10;A2AB09;A2AB12;A0A140T9X0;A0A0G2JJQ6;A2AB13;A2AB11;A0A140T959;A0A140T9C3;A0A140T910;A0A140T957;A0A140T9B1 O75955 92 109 FLOT1 Flotillin-1 yes no 3 8.6185E-09 95.767 By MS/MS By MS/MS 2 1 1.1732 1.1502 19.504 3 Median NaN NaN NaN 0 0 Median 1.2918 1.0948 27.287 2 0 Median 1.1732 1.1502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28955000 12833000 16123000 0 0 0 9656600 4246000 5410600 19299000 8586600 10712000 0 0 0 0 0 0 0 0 0 32596 1712 34271 170590;170591;170592 171990;171991;171992 171990 3 TEAESWYQTK AEVKAQYEEIANRSRTEAESWYQTKYEELQ ANRSRTEAESWYQTKYEELQQTAGRHGDDL R T E T K Y 1 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 10 0 1241.5564 CON__P13647;P13647;H0YI76;H0YIN9 CON__P13647 355 364 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00063503 93.649 By MS/MS By MS/MS 5 1 0.081279 0.064663 52.799 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.078222 0.058402 31.768 3 3 Median NaN NaN NaN 0 0 Median 0.1591 0.13635 NaN 1 1 Median 8160000 7481000 679000 0 0 0 0 0 0 0 0 0 6597300 6246100 351140 0 0 0 1562700 1234800 327870 + 32597 757 34272 170593;170594;170595;170596;170597;170598 171993;171994;171995;171996;171997;171998 171996 6 TEAGAVGEAGGAEDPGAAAGGSVR LFRHQDPGDPGPGIRTEAGAVGEAGGAEDP GGAEDPGAAAGGSVRGSGAVAEGNRTEAGS R T E V R G 7 1 0 1 0 0 3 7 0 0 0 0 0 0 1 1 1 0 0 2 0 0 24 0 2055.9457 Q8ND04 Q8ND04 94 117 SMG8 Protein SMG8 yes yes 2 8.6411E-16 67.605 By MS/MS 1 0.81085 0.69077 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81085 0.69077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1643400 954220 689200 0 0 0 0 0 0 0 0 0 1643400 954220 689200 0 0 0 0 0 0 32598 3422 34273 170599 171999 171999 1 TEALTQAFR TAIAGSEIFSLEMSKTEALTQAFRRSIGVR SLEMSKTEALTQAFRRSIGVRIKEETEIIE K T E F R R 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 9 0 1035.5349 Q9Y230;M0R0Y3;X6R2L4;M0QXI6 Q9Y230 116 124 RUVBL2 RuvB-like 2 yes no 2 3.3785E-18 160.75 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1 1.1342 1.0684 6.2852 7 Median 1.1342 1.0684 NaN 1 0 Median 1.2847 1.0811 NaN 1 0 Median 1.0766 1.0442 NaN 1 0 Median 1.1301 0.97042 4.0249 2 1 Median 1.0983 1.103 NaN 1 0 Median 1.3186 1.1351 NaN 1 0 Median 123330000 57042000 66285000 27010000 11967000 15043000 10539000 4476300 6062800 52874000 24850000 28024000 23084000 10891000 12194000 5796000 3033400 2762600 4024000 1825200 2198700 32599 4368 34274 170600;170601;170602;170603;170604;170605;170606 172000;172001;172002;172003;172004;172005 172005 5 TEAPTWETHGNLMTER ELVSKYRQQFEELYKTEAPTWETHGNLMTE EAPTWETHGNLMTERQVSRWFVQCLREQSM K T E E R Q 1 1 1 0 0 0 3 1 1 0 1 0 1 0 1 0 4 1 0 0 0 0 16 0 1871.8472 Q5SRE5 Q5SRE5 183 198 NUP188 Nucleoporin NUP188 homolog yes yes 3 0.0061609 42.647 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32600 3074 34275 170607 172006 172006 1 TEAQANQISLPR NLLTKIILEHVSTWRTEAQANQISLPRLVD TWRTEAQANQISLPRLVDLDWRVDIKTSSD R T E P R L 2 1 1 0 0 2 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 12 0 1326.6892 Q9P000 Q9P000 111 122 COMMD9 COMM domain-containing protein 9 yes yes 2 0.0012313 83.862 By MS/MS By MS/MS 1 2 0.86441 0.71742 16.723 3 Median 0.88817 0.89206 NaN 1 1 Median 0.81782 0.67875 7.8364 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7473300 4242800 3230600 2570300 1411300 1159000 4903100 2831500 2071600 0 0 0 0 0 0 0 0 0 0 0 0 32601 4195 34276 170608;170609;170610 172007;172008;172009 172009 3 TEAVASSLYDILAR TGWLDHWGQPHSTIKTEAVASSLYDILARG KTEAVASSLYDILARGASVNLYMFIGGTNF K T E A R G 3 1 0 1 0 0 1 0 0 1 2 0 0 0 0 2 1 0 1 1 0 0 14 0 1507.7882 E7EQ29;P16278;C9J4G9 E7EQ29 155 168 GLB1 Beta-galactosidase yes no 2 0.048976 24.382 By MS/MS By matching 1 1 1.2239 1.1389 2.9679 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1527 1.1631 NaN 1 0 Median 1.2995 1.1153 NaN 1 0 Median 1850000 613490 1236500 0 0 0 0 0 0 0 0 0 0 0 0 1033600 280390 753230 816410 333100 483310 32602 874 34277 170611;170612 172010 172010 1 TEDEVLTSK NKLALKTGIVAKKQKTEDEVLTSKGDAWAK VAKKQKTEDEVLTSKGDAWAKYMAEVKKYK K T E S K G 0 0 0 1 0 0 2 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 9 0 1020.4975 Q9BQ61 Q9BQ61 138 146 C19orf43 Uncharacterized protein C19orf43 yes yes 2 0.0088323 49.715 By MS/MS By matching 1 1 1.0949 0.96627 16.808 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1512 1.0882 NaN 1 0 Median 1.0413 0.85799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5359100 2565000 2794100 0 0 0 0 0 0 4898100 2327800 2570300 460950 237160 223780 0 0 0 0 0 0 32603 3783 34278 170613;170614 172011 172011 1 TEDEVLTSKGDAWAK NKLALKTGIVAKKQKTEDEVLTSKGDAWAK TEDEVLTSKGDAWAKYMAEVKKYKAHQCGD K T E A K Y 2 0 0 2 0 0 2 1 0 0 1 2 0 0 0 1 2 1 0 1 0 0 15 1 1648.7944 Q9BQ61 Q9BQ61 138 152 C19orf43 Uncharacterized protein C19orf43 yes yes 3 0.064766 11.279 By MS/MS 1 1.2425 1.2506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2425 1.2506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2468900 1117500 1351400 0 0 0 0 0 0 2468900 1117500 1351400 0 0 0 0 0 0 0 0 0 32604 3783 34279 170615 172012 172012 1 TEDFIIDTLELR RSFLGLTCLMQISTRTEDFIIDTLELRSDM STRTEDFIIDTLELRSDMYILNESLTDPAI R T E L R S 0 1 0 2 0 0 2 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1463.7508 Q01780 Q01780 335 346 EXOSC10 Exosome component 10 yes yes 2 0.00058963 73.067 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.165 1.1869 25.414 6 Median NaN NaN NaN 0 0 Median 1.1468 0.99094 NaN 1 0 Median 1.2176 1.2766 18.321 2 0 Median NaN NaN NaN 0 0 Median 1.3496 1.4513 20.412 2 0 Median 0.99041 0.83498 NaN 1 0 Median 10633000 4986800 5646300 0 0 0 7109500 3366900 3742600 2631500 1219800 1411700 0 0 0 836290 371260 465030 55866 28891 26975 32605 2691 34280 170616;170617;170618;170619;170620;170621 172013;172014;172015;172016;172017 172014 5 TEDIIIKDK DFPDEEEEEEETSVKTEDIIIKDKAKGKKS EETSVKTEDIIIKDKAKGKKSKAAAKAGSS K T E D K A 0 0 0 2 0 0 1 0 0 3 0 2 0 0 0 0 1 0 0 0 0 0 9 1 1073.5968 Q9P2J5;A0A087WXY1 Q9P2J5 131 139 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.0082463 78.149 By MS/MS By matching 1 1 0.81167 0.72178 51.441 2 Median NaN NaN NaN 0 0 Median 1.1116 1.0384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59267 0.50169 NaN 1 0 Median 3793200 1875700 1917500 0 0 0 2630800 1245000 1385800 0 0 0 0 0 0 0 0 0 1162400 630740 531690 32606 4224 34281 170622;170623 172018 172018 1 TEDNQSSEMQLTIDSLK SGEYGPASVPEYEARTEDNQSSEMQLTIDS DNQSSEMQLTIDSLKDAFASTSEGHDKTSV R T E L K D 0 0 1 2 0 2 2 0 0 1 2 1 1 0 0 3 2 0 0 0 0 0 17 0 1937.8888 D6RB01;Q9Y6X4 D6RB01 233 249 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 2.2038E-05 67.456 By MS/MS 1 0.84557 0.928 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84557 0.928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7008900 3802800 3206100 0 0 0 0 0 0 7008900 3802800 3206100 0 0 0 0 0 0 0 0 0 32607 814 34282 170624 172019;172020 172019 2 TEDPDLPAFYFDPLINPISHR VHLTWYHTPNVVFIKTEDPDLPAFYFDPLI PAFYFDPLINPISHRHSVKSQEPLPDDDEE K T E H R H 1 1 1 3 0 0 1 0 1 2 2 0 0 2 4 1 1 0 1 0 0 0 21 0 2456.2012 Q6P2Q9;I3L0J9 Q6P2Q9 342 362 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00074227 32.624 By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 0.53345 0.54972 9.5873 8 Median 0.57303 0.57122 5.0122 2 0 Median 0.7332 0.62172 NaN 1 0 Median 0.46142 0.50467 5.5 3 0 Median NaN NaN NaN 0 0 Median 0.55488 0.59126 10.713 2 1 Median NaN NaN NaN 0 0 Median 16012000 10255000 5757100 1527000 962000 564960 917310 498750 418560 10612000 6940900 3671500 0 0 0 2955100 1853000 1102100 0 0 0 32608 3157 34283 170625;170626;170627;170628;170629;170630;170631;170632 172021;172022;172023;172024;172025;172026;172027;172028 172022 8 TEDQTLITK MWKKYIQWEKSNPLRTEDQTLITKRVMFAY KSNPLRTEDQTLITKRVMFAYEQCLLVLGH R T E T K R 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 3 0 0 0 0 0 9 0 1047.5448 Q12996;E9PLP8 Q12996 266 274 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.0030333 67.897 By MS/MS By MS/MS 1 1 0.97293 0.98706 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97293 0.98706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11053000 5416400 5636600 0 0 0 0 0 0 11053000 5416400 5636600 0 0 0 0 0 0 0 0 0 32609 2777 34284 170633;170634 172029;172030;172031 172030 3 TEDQTLITKR MWKKYIQWEKSNPLRTEDQTLITKRVMFAY SNPLRTEDQTLITKRVMFAYEQCLLVLGHH R T E K R V 0 1 0 1 0 1 1 0 0 1 1 1 0 0 0 0 3 0 0 0 0 0 10 1 1203.6459 Q12996;E9PLP8 Q12996 266 275 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.038086 22.917 By MS/MS 1 0.92181 0.98004 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92181 0.98004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1766600 893640 872960 0 0 0 0 0 0 1766600 893640 872960 0 0 0 0 0 0 0 0 0 32610 2777 34285 170635 172032 172032 0 TEDSLMPEEEFLR PPPPMEDEPTSKKLKTEDSLMPEEEFLRRN LKTEDSLMPEEEFLRRNKGPVSIKVQVPNM K T E L R R 0 1 0 1 0 0 4 0 0 0 2 0 1 1 1 1 1 0 0 0 0 0 13 0 1594.7185 Q15459 Q15459 687 699 SF3A1 Splicing factor 3A subunit 1 yes yes 2 3.3165E-05 91.855 By matching By MS/MS By MS/MS By matching 2 1 2 1 0.72906 0.66333 6.5409 6 Median 0.70077 0.68385 7.2226 2 0 Median NaN NaN NaN 0 0 Median 0.63593 0.67714 NaN 1 0 Median 0.81834 0.68543 10.488 2 0 Median NaN NaN NaN 0 0 Median 0.74582 0.63186 NaN 1 0 Median 11147000 6526500 4620700 2997300 1842200 1155200 0 0 0 6722100 3926700 2795500 1273700 673090 600570 0 0 0 154020 84541 69474 32611 2954 34286 170636;170637;170638;170639;170640;170641 172033;172034;172035 172034 3 TEDSLMPEEEFLRR PPPPMEDEPTSKKLKTEDSLMPEEEFLRRN KTEDSLMPEEEFLRRNKGPVSIKVQVPNMQ K T E R R N 0 2 0 1 0 0 4 0 0 0 2 0 1 1 1 1 1 0 0 0 0 0 14 1 1750.8196 Q15459 Q15459 687 700 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 0.00013716 82.749 By matching By MS/MS By matching By MS/MS 1 3 1 1 0.85854 0.95739 34.593 6 Median NaN NaN NaN 0 0 Median 1.5991 1.5417 NaN 1 0 Median 0.82626 0.95473 35.992 3 0 Median 0.98067 0.96006 NaN 1 0 Median 0.86577 0.94068 NaN 1 0 Median NaN NaN NaN 0 0 Median 25506000 12776000 12729000 0 0 0 399350 185850 213500 15294000 7553400 7740400 390220 213100 177120 9422300 4823800 4598500 0 0 0 32612 2954 34287 170642;170643;170644;170645;170646;170647 172036;172037;172038;172039 172038 4 TEEADLLQTK TAEKYRQLKQQWEMKTEEADLLQTKLQQSS QWEMKTEEADLLQTKLQQSSYHKQQEELDA K T E T K L 1 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 0 1146.5768 O95347 O95347 723 732 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00034968 93.649 By MS/MS By MS/MS 1 1 1.0214 0.87736 1.9844 2 Median NaN NaN NaN 0 0 Median 1.0189 0.86514 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0238 0.88976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13224000 6271800 6951900 0 0 0 6314500 3172300 3142300 0 0 0 6909200 3099500 3809600 0 0 0 0 0 0 32613 1766 34288 170648;170649 172040;172041;172042 172040 3 TEEALQLYNQIIK IIHGQMAYILQLQGRTEEALQLYNQIIKLK GRTEEALQLYNQIIKLKPTDVGLLAVIANN R T E I K L 1 0 1 0 0 2 2 0 0 2 2 1 0 0 0 0 1 0 1 0 0 0 13 0 1561.8352 O76094;D6RDY6 O76094 242 254 SRP72 Signal recognition particle subunit SRP72 yes no 2 3.7227E-06 143.04 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1.1544 0.99773 13.625 6 Median 1.0439 0.9617 NaN 1 0 Median 1.1359 0.99299 NaN 1 0 Median 1.0511 1.0992 24.683 2 0 Median 1.3581 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1732 1.0025 NaN 1 0 Median 17831000 8030500 9800300 7004000 3315300 3688800 5348000 2366200 2981800 5056800 2155700 2901100 129540 52412 77129 0 0 0 292430 140910 151520 32614 1721 34289 170650;170651;170652;170653;170654;170655 172043;172044;172045;172046;172047 172046 5 TEEARPSPAPGPGTPTGTPTR VETSRALAAGADSPKTEEARPSPAPGPGTP SPAPGPGTPTGTPTRTPSRTAPGALTAKPP K T E T R T 2 2 0 0 0 0 2 3 0 0 0 0 0 0 6 1 5 0 0 0 0 0 21 1 2076.0236 Q4KMP7 Q4KMP7 135 155 TBC1D10B TBC1 domain family member 10B yes yes 3 9.6245E-12 64.522 By MS/MS By MS/MS 1 2 0.42099 0.47979 5.3606 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40246 0.46503 NaN 1 0 Median 0.49524 0.49768 5.1756 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7522300 5198300 2324000 0 0 0 0 0 0 4585100 3241100 1344100 2937100 1957200 979910 0 0 0 0 0 0 32615 3022 34290 170656;170657;170658 172048;172049;172050 172048 3 TEEDSEEVR KDGFSKSMVNTKPEKTEEDSEEVREQKHKT NTKPEKTEEDSEEVREQKHKTFVEKYEKQI K T E V R E 0 1 0 1 0 0 4 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 9 0 1092.4571 Q16543;K7EKQ2 Q16543 136 144 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.024906 37.727 By MS/MS 1 0.86641 0.75842 NaN 1 Median NaN NaN NaN 0 0 Median 0.86641 0.75842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 681590 374300 307300 0 0 0 681590 374300 307300 0 0 0 0 0 0 0 0 0 0 0 0 32616 2988 34291 170659 172051 172051 1 TEEDSEEVREQK KDGFSKSMVNTKPEKTEEDSEEVREQKHKT PEKTEEDSEEVREQKHKTFVEKYEKQIKHF K T E Q K H 0 1 0 1 0 1 5 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 12 1 1477.6532 Q16543;K7EKQ2 Q16543 136 147 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 3 0.0092804 28.806 By matching By MS/MS 1 1 0.99408 0.95753 9.6746 2 Median 1.008 1.0253 NaN 1 0 Median 0.98033 0.89421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1613300 796200 817110 908890 417920 490970 704420 378280 326140 0 0 0 0 0 0 0 0 0 0 0 0 32617 2988 34292 170660;170661 172052 172052 1 TEEEEIDR YGDVFGTNAAEFQTKTEEEEIDRTPWGELE AAEFQTKTEEEEIDRTPWGELEPSDEESSE K T E D R T 0 1 0 1 0 0 4 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 1019.4407 Q13435;E9PPJ0;H0YEX5 Q13435 698 705 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.0035902 86.953 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1.0283 1.0195 7.6314 7 Median 0.91583 0.92485 NaN 1 0 Median 1.2134 1.0195 NaN 1 0 Median 0.86157 0.92682 NaN 1 0 Median 1.1072 0.94334 NaN 1 0 Median 1.0283 1.0749 1.9484 3 0 Median NaN NaN NaN 0 0 Median 16056000 7402300 8653500 586060 268320 317740 6678000 2773700 3904300 874290 492900 381400 1556400 710070 846310 6361100 3157300 3203800 0 0 0 32618 2817 34293 170662;170663;170664;170665;170666;170667;170668 172053;172054;172055;172056;172057;172058;172059;172060;172061 172061 9 TEEGLGFNIMGGK ASEGHSHPRVVELPKTEEGLGFNIMGGKEQ PKTEEGLGFNIMGGKEQNSPIYISRIIPGG K T E G K E 0 0 1 0 0 0 2 4 0 1 1 1 1 1 0 0 1 0 0 0 0 0 13 0 1351.6442 Q9NUP9;G3V1D4 Q9NUP9 99 111 LIN7C Protein lin-7 homolog C yes no 2 5.3333E-05 87.806 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.1793 1.0456 14.515 7 Median 0.88991 0.82932 NaN 1 0 Median 1.2235 1.0456 NaN 1 0 Median 1.1422 1.0711 4.5508 2 2 Median 1.2798 1.0445 NaN 1 0 Median 1.1586 1.1925 NaN 1 0 Median 1.5951 1.3279 NaN 1 0 Median 31438000 15106000 16333000 8935000 4747200 4187900 1128400 554980 573370 19924000 9140700 10783000 255630 116920 138710 708720 343620 365100 487130 202260 284880 32619 4117 34294 170669;170670;170671;170672;170673;170674;170675 172062;172063;172064;172065;172066 172063 5 TEEGPTLSYGR PENLPQILLQLKRRRTEEGPTLSYGRDGRS KRRRTEEGPTLSYGRDGRSATREPPYRVPR R T E G R D 0 1 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1208.5673 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 150 160 MATR3 Matrin-3 yes no 2 0.00012227 147.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 5 3 0.96881 0.82378 13.98 11 Median NaN NaN NaN 0 0 Median 1.0525 0.91973 9.8877 2 0 Median 0.80298 0.86626 11.891 2 1 Median 1.0587 0.89758 NaN 1 0 Median 0.79202 0.79974 23.9 3 0 Median 0.96881 0.78714 7.5797 3 0 Median 98612000 53733000 44879000 0 0 0 18298000 9635700 8662700 28964000 16475000 12489000 8522500 3879500 4643100 29631000 16777000 12853000 13196000 6965600 6230600 32620 297 34295 170676;170677;170678;170679;170680;170681;170682;170683;170684;170685;170686;170687;170688 172067;172068;172069;172070;172071;172072;172073;172074;172075;172076;172077;172078;172079;172080;172081;172082;172083;172084 172074 18 TEEGPTLSYGRDGR PENLPQILLQLKRRRTEEGPTLSYGRDGRS RTEEGPTLSYGRDGRSATREPPYRVPRDDW R T E G R S 0 2 0 1 0 0 2 3 0 0 1 0 0 0 1 1 2 0 1 0 0 0 14 1 1536.7168 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 150 163 MATR3 Matrin-3 yes no 3 0.00064999 45.28 By matching By MS/MS By MS/MS 1 1 1 1.1329 1.0241 26.833 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.357 1.4163 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76539 0.83161 NaN 1 1 Median 1.1329 1.0241 NaN 1 0 Median 8327800 4076000 4251900 0 0 0 0 0 0 1098300 539370 558960 0 0 0 5389000 2547400 2841600 1840600 989200 851360 32621 297 34296 170689;170690;170691 172085;172086 172086 2 TEELKPQVEEK ESSHEPEPEPESETKTEELKPQVEEKNLEE SETKTEELKPQVEEKNLEELEEKSTTPPPA K T E E K N 0 0 0 0 0 1 4 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1328.6824 Q9UN86 Q9UN86 206 216 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2;3 0.00092477 75.378 By MS/MS 2 1.1018 1.0325 18.804 2 Median NaN NaN NaN 0 0 Median 1.1018 1.0325 18.804 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5882500 3042800 2839700 0 0 0 5882500 3042800 2839700 0 0 0 0 0 0 0 0 0 0 0 0 32622 4341 34297 170692;170693 172087;172088 172088 2 TEELNKEVASNSELVQSSR AEKNRRDAETWFLSKTEELNKEVASNSELV NKEVASNSELVQSSRSEVTELRRVLQGLEI K T E S R S 1 1 2 0 0 1 4 0 0 0 2 1 0 0 0 4 1 0 0 2 0 0 19 1 2119.0393 CON__P08779;P08779;K7ENW6 CON__P08779 312 330 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 2.8208E-81 195.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 4 4 2 1 0.11657 0.12221 100.02 15 Median 0.11674 0.12066 120.77 4 4 Median 0.22623 0.20494 68.695 2 2 Median 0.030682 0.035327 75.254 2 2 Median 0.12803 0.11641 125.07 4 4 Median 0.11255 0.12714 5.5959 2 2 Median 0.067369 0.059844 NaN 1 1 Median 176200000 169100000 7103200 51737000 48936000 2800800 7752500 6506700 1245800 97062000 95267000 1795500 7628500 6975700 652760 10458000 9924100 533830 1561600 1487000 74643 + 32623 754 34298 170694;170695;170696;170697;170698;170699;170700;170701;170702;170703;170704;170705;170706;170707;170708;170709;170710;170711 172089;172090;172091;172092;172093;172094;172095;172096;172097;172098;172099;172100;172101;172102;172103;172104;172105;172106;172107 172098 19 TEELNREVAGHTEQLQMSR AEQNRKDAEAWFTSRTEELNREVAGHTEQL NREVAGHTEQLQMSRSEVTDLRRTLQGLEI R T E S R S 1 2 1 0 0 2 4 1 1 0 2 0 1 0 0 1 2 0 0 1 0 0 19 1 2227.0651 CON__P08727;P08727;K7EMS3 CON__P08727 275 293 KRT19 Keratin, type I cytoskeletal 19 yes no 3 3.0916E-10 93.269 By MS/MS By MS/MS By MS/MS 1 2 1 1.322 1.1885 9.6884 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.358 1.1954 NaN 1 0 Median 1.2089 1.3017 13.699 2 0 Median 1.3239 1.1704 NaN 1 0 Median 36928000 17008000 19919000 0 0 0 0 0 0 0 0 0 3916600 1900900 2015600 27011000 12404000 14607000 6000000 2703500 3296500 + 32624 752 34299 170712;170713;170714;170715 172108;172109;172110;172111;172112 172109 5 TEELNREVATNSELVQSGK AEKNRKDAEDWFFSKTEELNREVATNSELV NREVATNSELVQSGKSEISELRRTMQALEI K T E G K S 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 2 2 0 0 2 0 0 19 1 2103.0444 P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7ESE1 CON__Q04695 279 297 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 4.8897E-48 158.92 By MS/MS By MS/MS By MS/MS 1 1 2 0.49118 0.52578 74.29 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91634 1.0643 NaN 1 1 Median 0.18593 0.17694 NaN 1 1 Median 0.49118 0.52578 9.5783 2 1 Median NaN NaN NaN 0 0 Median 103880000 70526000 33350000 0 0 0 0 0 0 26105000 10369000 15736000 49540000 40918000 8621500 28231000 19239000 8992500 0 0 0 + 32625 768;739 34300 170716;170717;170718;170719 172113;172114;172115;172116;172117 172117 5 TEEPMETEPK PEGEEKVEKAEVKERTEEPMETEPKGAADV EVKERTEEPMETEPKGAADVEKVEEKSAID R T E P K G 0 0 0 0 0 0 4 0 0 0 0 1 1 0 2 0 2 0 0 0 0 0 10 0 1189.5173 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;A0A2R8Y6G9 Q14839 1627 1636 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00040727 76.827 By MS/MS By MS/MS By MS/MS 1 1 1 0.66391 0.73999 17.703 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66391 0.73999 NaN 1 0 Median 1.077 0.97468 NaN 1 0 Median 0.66064 0.70048 NaN 1 0 Median NaN NaN NaN 0 0 Median 5883900 3323300 2560600 0 0 0 0 0 0 3409000 2012400 1396700 543270 258960 284310 1931600 1052000 879600 0 0 0 32626 246 34301 170720;170721;170722 172118;172119;172120;172121 172119 4 TEERAELAESR EVARKLVIIEGDLERTEERAELAESRCREM DLERTEERAELAESRCREMDEQIRLMDQNL R T E S R C 2 2 0 0 0 0 4 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 11 1 1289.6212 A0A087WWU8;J3KN67;A0A2R2Y2Q3;A0A494C0P6 A0A087WWU8 143 153 TPM3 no no 3 4.398E-05 85.522 By MS/MS By MS/MS By matching 1 1 1 1.1598 1.0021 11.892 3 Median 0.93086 1.0021 NaN 1 0 Median 1.1598 0.98499 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3626 1.2201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7190700 3211300 3979300 4346700 1989000 2357700 2640500 1152000 1488500 0 0 0 203440 70390 133050 0 0 0 0 0 0 32627 63;1303 34302 170723;170724;170725 172122;172123;172124;172125 172123 4 TEETATEMLTSELQTQAHVIK LVQNIIQTAVDQFVRTEETATEMLTSELQT EMLTSELQTQAHVIKADSQDAGQETEKEGE R T E I K A 2 0 0 0 0 2 4 0 1 1 2 1 1 0 0 1 5 0 0 1 0 0 21 0 2359.1577 Q02952 Q02952 1564 1584 AKAP12 A-kinase anchor protein 12 yes yes 3 2.6797E-14 91.637 By MS/MS By MS/MS 4 3 1.1275 1.0032 17.746 7 Median 1.3962 1.3756 21.067 4 0 Linear 1.1275 1.0032 11.546 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63998000 27400000 36598000 44627000 18543000 26084000 19371000 8857300 10514000 0 0 0 0 0 0 0 0 0 0 0 0 32628 2705 34303;34304 170726;170727;170728;170729;170730;170731;170732 172126;172127;172128;172129;172130;172131;172132 172127 1392 7 TEEVKEENLK SAASYFQKRNSQTNKTEEVKEENLKNVLSE SQTNKTEEVKEENLKNVLSETPAICPPQNT K T E L K N 0 0 1 0 0 0 4 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1217.6139 O75717 O75717 989 998 WDHD1 WD repeat and HMG-box DNA-binding protein 1 yes yes 2 0.029276 49.418 By MS/MS 1 1.0606 1.0041 NaN 1 Median NaN NaN NaN 0 0 Median 1.0606 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 498360 205790 292570 0 0 0 498360 205790 292570 0 0 0 0 0 0 0 0 0 0 0 0 32629 1693 34305 170733 172133 172133 1 TEFAEHLGEMNR LQLSTCDVESKRYERTEFAEHLGEMNRQWH YERTEFAEHLGEMNRQWHRVHGMLNRKIQH R T E N R Q 1 1 1 0 0 0 3 1 1 0 1 0 1 1 0 0 1 0 0 0 0 0 12 0 1432.6405 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3 Q8WXH0 5138 5149 SYNE2 Nesprin-2 yes no 3 0.00017161 64.121 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.98706 1.0336 16.029 5 Median 0.90737 0.91926 NaN 1 0 Median 1.2894 1.0826 NaN 1 0 Median 0.74214 0.79073 NaN 1 0 Median 1.3819 1.2001 NaN 1 0 Median 0.98706 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median 13701000 7064600 6636200 2786800 1438200 1348600 1821200 814590 1006600 6591200 3740700 2850500 471890 167960 303930 2029700 903080 1126600 0 0 0 32630 3521 34306 170734;170735;170736;170737;170738 172134;172135 172134 2 TEFIPSTDPFQK SEKDSNFQNPFKIDRTEFIPSTDPFQKALR IDRTEFIPSTDPFQKALREEEKRRKKEEKR R T E Q K A 0 0 0 1 0 1 1 0 0 1 0 1 0 2 2 1 2 0 0 0 0 0 12 0 1408.6874 Q9H6E4 Q9H6E4 187 198 CCDC134 Coiled-coil domain-containing protein 134 yes yes 2 0.003025 47.187 By matching By MS/MS 1 1 0.87118 0.87436 1.9525 2 Median 0.82935 0.88652 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91512 0.86238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13365000 7651500 5713600 7580900 4501800 3079100 0 0 0 5784200 3149700 2634500 0 0 0 0 0 0 0 0 0 32631 3973 34307 170739;170740 172136 172136 1 TEFTLTEAVVESSR LTPLESAINVLEMIKTEFTLTEAVVESSRK KTEFTLTEAVVESSRKLVKEAAVIICIKNK K T E S R K 1 1 0 0 0 0 3 0 0 0 1 0 0 1 0 2 3 0 0 2 0 0 14 0 1567.773 H3BR06;Q15554;H3BTA7;J3KSZ6;V9GYM1 H3BR06 62 75 TERF2 Telomeric repeat-binding factor 2 yes no 2 1.2816E-06 87.363 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32632 1226 34308 170741 172137 172137 1 TEFWLISAPGEK ______________________________ ______________________________ M T E E K T 1 0 0 0 0 0 2 1 0 1 1 1 0 1 1 1 1 1 0 0 0 0 12 0 1376.6976 P21283 P21283 2 13 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 2 0.0014421 53.327 By MS/MS By MS/MS 2 1 1.1105 1.1104 13.613 3 Median 1.061 1.0264 11.117 2 0 Median NaN NaN NaN 0 0 Median 1.1489 1.2443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7011500 3306100 3705400 3965500 1920900 2044700 0 0 0 3046000 1385300 1660800 0 0 0 0 0 0 0 0 0 32633 2087 34309 170742;170743;170744 172138;172139;172140 172139 3 TEGDEEAEEEQEENLEASGDYK ______________________________ EEEQEENLEASGDYKYSGRDSLIFLVDASK K T E Y K Y 2 0 1 2 0 1 9 2 0 0 1 1 0 0 0 1 1 0 1 0 0 0 22 0 2499.9885 P12956 P12956 10 31 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 2.9623E-14 92.935 By matching By matching By MS/MS 1 1 1 0.80557 0.85416 18.795 3 Plateau 0.76014 0.72979 NaN 1 0 Median 0.80557 0.71487 NaN 1 0 Median 0.95662 0.99972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10617000 5293400 5323200 4142800 2277200 1865600 592350 339870 252480 5881400 2676300 3205100 0 0 0 0 0 0 0 0 0 32634 1985 34310 170745;170746;170747 172141;172142 172142 2 TEGISTSDIITR YKHIKEAGMFAPTQRTEGISTSDIITRIVR TQRTEGISTSDIITRIVRDYDVYARRNLQR R T E T R I 0 1 0 1 0 0 1 1 0 3 0 0 0 0 0 2 3 0 0 0 0 0 12 0 1291.662 C9J050;C9JEJ2;P49585;H7C1T3;H7BZN1;Q9Y5K3 C9J050 197 208 PCYT1A;PCYT1B Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B yes no 2 5.3399E-06 130.98 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.2833 1.2417 12.832 5 Median 1.0631 1.0619 NaN 1 0 Median 1.2104 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4048 1.2417 NaN 1 0 Median 1.2833 1.3379 NaN 1 0 Median 1.5897 1.3637 NaN 1 0 Median 27477000 13344000 14134000 18259000 8822000 9436900 1303000 580460 722560 0 0 0 1572700 618320 954390 4965400 2745300 2220200 1377300 577680 799620 32635 666 34311 170748;170749;170750;170751;170752 172143;172144;172145 172144 3 TEGLSVLSQAMAVIK IAPPRYVMTTTTLERTEGLSVLSQAMAVIK TEGLSVLSQAMAVIKEKIEEKRGVFNVQME R T E I K E 2 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 1 0 0 2 0 0 15 0 1545.8436 P05198;G3V4T5;H0YJS4 P05198 245 259 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 1.5278E-06 94.616 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 2 1.2415 1.1054 39.383 9 Median 1.2415 1.2153 4.4065 3 0 Median 0.68775 0.5957 71.251 2 0 Median 1.3593 1.3033 NaN 1 0 Median 1.2986 1.1054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.191 0.96453 8.1721 2 0 Median 38583000 16909000 21674000 9903400 4366300 5537100 1600400 775760 824620 5354300 2122100 3232200 1035900 428090 607800 0 0 0 20689000 9216300 11472000 32636 1862 34312 170753;170754;170755;170756;170757;170758;170759;170760;170761 172146;172147;172148;172149;172150;172151;172152 172152 7 TEGSLEDWDIAVQK DYPEHVCEVLLTMERTEGSLEDWDIAVQKT RTEGSLEDWDIAVQKTETRLARVNEQRMKA R T E Q K T 1 0 0 2 0 1 2 1 0 1 1 1 0 0 0 1 1 1 0 1 0 0 14 0 1589.7573 A0A499FI31;Q15020 A0A499FI31 573 586 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.00086863 57.492 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.5339 1.4566 16.328 4 Median 1.2446 1.2219 NaN 1 0 Median 1.4887 1.3084 NaN 1 0 Median 1.5805 1.7122 NaN 1 0 Median 1.8819 1.6215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8395200 3625600 4769700 4041800 1738500 2303300 624310 330520 293790 3489200 1488700 2000500 239990 67870 172120 0 0 0 0 0 0 32637 473 34313 170762;170763;170764;170765 172153;172154;172155 172155 3 TEGTAHSSNTSDVDFTGASSAK ISENPTLDLPCSIGRTEGTAHSSNTSDVDF SNTSDVDFTGASSAKETTSSSISRHYGLSD R T E A K E 3 0 1 2 0 0 1 2 1 0 0 1 0 1 0 5 4 0 0 1 0 0 22 0 2168.9458 Q9Y483 Q9Y483 442 463 MTF2 Metal-response element-binding transcription factor 2 yes yes 3 7.7898E-07 40.381 By MS/MS By matching By MS/MS 1 1 1 0.89455 0.92123 6.9214 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87111 0.91783 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89455 0.92123 NaN 1 0 Median 1.2355 1.0366 NaN 1 0 Median 8671100 4596200 4074900 0 0 0 0 0 0 5155600 2640700 2514900 0 0 0 1871200 1216600 654580 1644300 738900 905420 32638 4439 34314 170766;170767;170768 172156;172157;172158 172157 3 TEGTQEADQYADEK TDKEVSVETVSILSKTEGTQEADQYADEKT KTEGTQEADQYADEKTKDVPFFEGLEGSID K T E E K T 2 0 0 2 0 2 3 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 14 0 1583.6587 Q02952 Q02952 1261 1274 AKAP12 A-kinase anchor protein 12 yes yes 2 8.1537E-06 145.55 By MS/MS By MS/MS 2 3 1.0905 0.95952 18.816 5 Median 1.026 0.99185 31.722 2 0 Median 1.0905 0.95952 14.314 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17060000 7894000 9165600 2772600 1306500 1466100 14287000 6587500 7699600 0 0 0 0 0 0 0 0 0 0 0 0 32639 2705 34315 170769;170770;170771;170772;170773 172159;172160;172161;172162;172163;172164;172165;172166;172167 172164 9 TEHLGLNWFPNSVENILK WRPLYDMVERILYSKTEHLGLNWFPNSVEN LGLNWFPNSVENILKTLVKSCRPYFPADAT K T E L K T 0 0 3 0 0 0 2 1 1 1 3 1 0 1 1 1 1 1 0 1 0 0 18 0 2110.0847 Q14997;F8WBH5 Q14997 157 174 PSME4 Proteasome activator complex subunit 4 yes no 3 3.6627E-05 46.621 By MS/MS 1 1.3602 1.2071 NaN 1 Median NaN NaN NaN 0 0 Median 1.3602 1.2071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046200 1992300 2053800 0 0 0 4046200 1992300 2053800 0 0 0 0 0 0 0 0 0 0 0 0 32640 2906 34316 170774 172168;172169 172169 2 TEIEDFPR QLVWKSAEGTFFINKTEIEDFPRFPHRGLL GTFFINKTEIEDFPRFPHRGLLLDTSRHYL K T E P R F 0 1 0 1 0 0 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 8 0 1005.4767 H3BS10;H3BP20;P06865;H3BU85;H3BTD4 H3BS10 159 166 HEXA Beta-hexosaminidase;Beta-hexosaminidase subunit alpha yes no 2 0.040404 55.676 By MS/MS 1 1.2548 1.0767 NaN 1 Median NaN NaN NaN 0 0 Median 1.2548 1.0767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2586100 1096900 1489200 0 0 0 2586100 1096900 1489200 0 0 0 0 0 0 0 0 0 0 0 0 32641 1218 34317 170775 172170 172170 1 TEIIILATR EDGYSGVEVRVTPTRTEIIILATRTQNVLG RVTPTRTEIIILATRTQNVLGEKGRRIREL R T E T R T 1 1 0 0 0 0 1 0 0 3 1 0 0 0 0 0 2 0 0 0 0 0 9 0 1028.623 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 46 54 RPS3 40S ribosomal protein S3 yes no 2 0.00091113 91.069 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 1 3 1.2101 1.0609 10.066 15 Median 1.2212 1.1397 8.3622 3 0 Plateau 1.2101 1.0061 7.5134 5 0 Median 1.125 1.0882 19.784 2 0 Median 1.2893 1.071 14.994 2 0 Median 1.1731 1.1816 NaN 1 0 Median 1.4051 1.0874 3.4794 2 0 Median 214230000 97318000 116910000 92144000 42831000 49313000 58437000 25823000 32614000 21764000 9919100 11845000 4057300 1930800 2126500 16346000 8006900 8339100 21479000 8807400 12671000 32642 2112 34318 170776;170777;170778;170779;170780;170781;170782;170783;170784;170785;170786;170787;170788;170789;170790;170791 172171;172172;172173;172174;172175;172176;172177;172178;172179;172180;172181;172182;172183;172184;172185;172186;172187;172188;172189 172178 18 TEIKEEEDQPSTSATQSSPAPGQSK KMESTETEERSTELKTEIKEEEDQPSTSAT STSATQSSPAPGQSKKKIFKPEELRQALMP K T E S K K 2 0 0 1 0 3 4 1 0 1 0 2 0 0 3 5 3 0 0 0 0 0 25 1 2631.2148 Q09472 Q09472 1021 1045 EP300 Histone acetyltransferase p300 yes yes 3 0.011427 18.298 By MS/MS 1 0.64524 0.60121 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64524 0.60121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 655230 396180 259050 0 0 0 0 0 0 0 0 0 655230 396180 259050 0 0 0 0 0 0 32643 2748 34319 170792 172190;172191 172190 2 TEILPPFFK KQCCGTDGVEANYIKTEILPPFFKHFWQHR EANYIKTEILPPFFKHFWQHRMALDRRNYR K T E F K H 0 0 0 0 0 0 1 0 0 1 1 1 0 2 2 0 1 0 0 0 0 0 9 0 1090.6063 O75533 O75533 808 816 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00839 50.127 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 2 0.82654 0.81026 5.2079 8 Median 0.83923 0.83177 NaN 1 0 Median 0.92131 0.80783 NaN 1 0 Median 0.75779 0.79973 11.918 2 0 Median 0.95254 0.82756 2.5625 2 0 Median 0.78997 0.78493 1.5887 2 0 Median NaN NaN NaN 0 0 Median 25902000 13998000 11904000 2683200 1391200 1292100 2338800 1212100 1126700 10637000 5759200 4877500 1117000 569750 547290 9126500 5066000 4060500 0 0 0 32644 1683 34320 170793;170794;170795;170796;170797;170798;170799;170800 172192;172193;172194;172195;172196;172197;172198 172194 7 TEILSLEKPLLLHTGMGR QVVDFLSRNKQLYQKTEILSLEKPLLLHTG LSLEKPLLLHTGMGRLCTLDESVSLATMID K T E G R L 0 1 0 0 0 0 2 2 1 1 5 1 1 0 1 1 2 0 0 0 0 0 18 1 2007.1187 Q9GZT8 Q9GZT8 235 252 NIF3L1 NIF3-like protein 1 yes yes 3 1.157E-05 49.993 By MS/MS 1 0.84968 0.91026 NaN 1 Median 0.84968 0.91026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4466600 2259100 2207500 4466600 2259100 2207500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32645 3916 34321 170801 172199;172200 172200 2 TEIMSPLYQDEAPK QQKQQLPQTPPSCLKTEIMSPLYQDEAPKG KTEIMSPLYQDEAPKGTEASSGTEAATGLE K T E P K G 1 0 0 1 0 1 2 0 0 1 1 1 1 0 2 1 1 0 1 0 0 0 14 0 1620.7705 Q8IY81 Q8IY81 580 593 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 9.7798E-06 90.653 By MS/MS 3 0.80092 0.81762 16.359 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80092 0.81762 16.359 3 1 Median NaN NaN NaN 0 0 Median 23116000 13208000 9908100 0 0 0 0 0 0 0 0 0 0 0 0 23116000 13208000 9908100 0 0 0 32646 3338 34322 170802;170803;170804 172201;172202;172203;172204 172202 4 TEIQNIEFEPK NYFIPSHYFGGKLKKTEIQNIEFEPKEKVQ KLKKTEIQNIEFEPKEKVQCPPTRVMILTA K T E P K E 0 0 1 0 0 1 3 0 0 2 0 1 0 1 1 0 1 0 0 0 0 0 11 0 1346.6718 A0A0D9SFM0;Q149N8;H7C2W2;K4DI94 A0A0D9SFM0 424 434 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.0059412 45.161 By MS/MS By matching 1 1 1.4226 1.5684 68.912 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86455 0.96346 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3408 2.5532 NaN 1 0 Median NaN NaN NaN 0 0 Median 4948000 2395600 2552400 0 0 0 0 0 0 3999200 2066200 1932900 0 0 0 948830 329420 619410 0 0 0 32647 268 34323 170805;170806 172205 172205 1 TEISDKITSELVSK EPDDGSNDVVDLLPRTEISDKITSELVSKI RTEISDKITSELVSKIGDKNWKIRKEGLDE R T E S K I 0 0 0 1 0 0 2 0 0 2 1 2 0 0 0 3 2 0 0 1 0 0 14 1 1548.8247 Q14008 Q14008 855 868 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 6.1729E-32 213.63 By MS/MS By MS/MS By matching By MS/MS By matching 2 4 1 2 2 1.0756 1.1129 15.089 11 Median 1.0992 1.0644 15.979 2 1 Median NaN NaN NaN 0 0 Median 0.92607 1.0751 24.566 4 3 Median 1.0789 1.0088 NaN 1 0 Median 1.0607 1.1325 2.4699 2 1 Median 1.2473 1.1131 6.6761 2 0 Median 142730000 68685000 74046000 20048000 9487300 10561000 0 0 0 112910000 54556000 58352000 1243900 560940 682970 7228900 3543900 3685100 1301600 537150 764500 32648 2850 34324 170807;170808;170809;170810;170811;170812;170813;170814;170815;170816;170817 172206;172207;172208;172209;172210;172211;172212;172213;172214 172210 9 TEISEMNR QSLAGKHGDDLRRTKTEISEMNRNISRLQA DDLRRTKTEISEMNRNISRLQAEIEGLKGQ K T E N R N 0 1 1 0 0 0 2 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 8 0 978.44404 P05787;CON__P05787;CON__Q9H552 P05787 305 312 KRT8 Keratin, type II cytoskeletal 8 no no 2 1.6003E-05 158.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 5 1.204 1.1624 29.206 18 Median 1.6691 1.6546 62.218 2 0 Median 1.519 1.2995 20.331 2 0 Median 1.1611 1.1783 25.078 3 0 Median 1.4326 1.2467 25.288 3 1 Median 1.2635 1.2617 22.387 3 0 Median 1.1693 0.95049 7.7706 5 0 Median 100920000 44049000 56873000 10525000 4876000 5648500 14775000 6020200 8754400 14511000 6429800 8081400 5316900 2377100 2939800 38214000 16093000 22121000 17582000 8253200 9328500 + 32649 750;792 34325 170818;170819;170820;170821;170822;170823;170824;170825;170826;170827;170828;170829;170830;170831;170832;170833;170834;170835 172215;172216;172217;172218;172219;172220;172221;172222;172223;172224;172225;172226;172227;172228;172229;172230;172231;172232;172233;172234 172223 20 TEISFRPNDPK RVAPPGLTQIPQIQKTEISFRPNDPKSYEA QIQKTEISFRPNDPKSYEAYVLNIVRFLEK K T E P K S 0 1 1 1 0 0 1 0 0 1 0 1 0 1 2 1 1 0 0 0 0 0 11 1 1302.6568 P05026;V9GYR2 P05026 86 96 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 3 0.05927 15.372 By MS/MS 1 0.64306 0.58771 NaN 1 Median NaN NaN NaN 0 0 Median 0.64306 0.58771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1800200 1142000 658130 0 0 0 1800200 1142000 658130 0 0 0 0 0 0 0 0 0 0 0 0 32650 1858 34326 170836 172235 172235 1 TEITELRR NREVATNTEALQSSRTEITELRRSVQNLEI EALQSSRTEITELRRSVQNLEIELQSQLSM R T E R R S 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 8 1 1016.5615 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;CON__P08730-1;CON__Q6IFX2 CON__Q6IFX2 308 315 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.0020635 91.9 By MS/MS 1 0.37199 0.32649 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37199 0.32649 NaN 1 1 Median 2051700 1617900 433800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2051700 1617900 433800 + 32651 787;753;736 34327 170837 172236 172236 1 TEITIVKPQESAHR AEVLGHKTPEPAPRRTEITIVKPQESAHRR RTEITIVKPQESAHRRMEPPASKVPEVPTA R T E H R R 1 1 0 0 0 1 2 0 1 2 0 1 0 0 1 1 2 0 0 1 0 0 14 1 1607.8631 Q9UHD8;K7ENL0;K7EJ51;K7ER34 Q9UHD8 150 163 SEPT9 Septin-9 yes no 3;4 0.0032164 34.179 By MS/MS By MS/MS 2 5 1.0972 1.0296 12.117 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86306 0.91657 4.2416 2 0 Median 1.1308 1.0368 10.545 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11334000 5835900 5498600 0 0 0 0 0 0 6056100 3457100 2599000 5278400 2378800 2899600 0 0 0 0 0 0 32652 4276 34328 170838;170839;170840;170841;170842;170843;170844 172237;172238;172239;172240;172241 172239 5 TEIVALHAQQDR KELYSLNEKKLLELRTEIVALHAQQDRALT ELRTEIVALHAQQDRALTQTDRKIETEVAG R T E D R A 2 1 0 1 0 2 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1379.7157 U3KQP8;Q96AQ8 U3KQP8 71 82 MCUR1 Mitochondrial calcium uniporter regulator 1 yes no 3 0.0002222 60.49 By MS/MS By MS/MS 1 1 0.98895 0.88513 32.675 2 Median 0.74495 0.70253 NaN 1 0 Median 1.3129 1.1152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3763700 2030900 1732800 1988900 1297200 691630 1774900 733680 1041200 0 0 0 0 0 0 0 0 0 0 0 0 32653 3602 34329 170845;170846 172242;172243;172244 172244 3 TEIVFTGEKEQLAQAVAR ETGTRINIPPPSVNRTEIVFTGEKEQLAQA VFTGEKEQLAQAVARIKKIYEEKKKKTTTI R T E A R I 3 1 0 0 0 2 3 1 0 1 1 1 0 1 0 0 2 0 0 2 0 0 18 1 1989.0531 Q00341;A0A024R4E5;H0Y394;H7C0A4 Q00341 266 283 HDLBP Vigilin yes no 2;3 9.0282E-14 125.52 By MS/MS By MS/MS 2 1 1.0056 1.0076 23.066 3 Median 0.96634 0.96545 6.0438 2 0 Median NaN NaN NaN 0 0 Median 1.2614 1.4297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77740000 38547000 39193000 66383000 33397000 32986000 0 0 0 11357000 5149700 6207400 0 0 0 0 0 0 0 0 0 32654 4 34330 170847;170848;170849 172245;172246;172247;172248 172248 4 TEKEESTEVLK SSDFTCGSPTAAGKKTEKEESTEVLKAQSA AGKKTEKEESTEVLKAQSAGTVRSAAPPQE K T E L K A 0 0 0 0 0 0 4 0 0 0 1 2 0 0 0 1 2 0 0 1 0 0 11 1 1291.6507 P20810;A0A0C4DGB5;B7Z574;E7EVY3;E9PCH5;E7ES10;E9PDE4;H0Y9H6;H0Y7F0;F8W7E0;H0YA91 P20810 251 261 CAST Calpastatin yes no 2 0.010192 55.064 By MS/MS By matching 1 1 1.1051 1.0468 10.743 2 Median NaN NaN NaN 0 0 Median 1.1989 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0186 0.97026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 970600 475330 495270 0 0 0 814290 395530 418750 0 0 0 156310 79797 76516 0 0 0 0 0 0 32655 239 34331 170850;170851 172249 172249 1 TEKPDTVQLLTVK VFKFVGFKFTVKKDKTEKPDTVQLLTVKKD DKTEKPDTVQLLTVKKDEGEGAAGAGDHKD K T E V K K 0 0 0 1 0 1 1 0 0 0 2 2 0 0 1 0 3 0 0 2 0 0 13 1 1470.8294 Q02952 Q02952 190 202 AKAP12 A-kinase anchor protein 12 yes yes 3 0.01891 24.359 By MS/MS By matching 1 1 0.69198 0.70221 40.271 2 Median 0.86269 0.93355 NaN 1 0 Median 0.55505 0.5282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5969400 2845200 3124200 2575900 1049200 1526700 3393500 1796000 1597500 0 0 0 0 0 0 0 0 0 0 0 0 32656 2705 34332 170852;170853 172250 172250 1 TELAEPIAIR ADFAPEVAWVTRSGKTELAEPIAIRPTSET TRSGKTELAEPIAIRPTSETVMYPAYAKWV K T E I R P 2 1 0 0 0 0 2 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 10 0 1111.6237 P07814 P07814 1110 1119 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.013464 40.002 By MS/MS 1 0.80209 0.66539 NaN 1 Median NaN NaN NaN 0 0 Median 0.80209 0.66539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1368700 790680 578000 0 0 0 1368700 790680 578000 0 0 0 0 0 0 0 0 0 0 0 0 32657 1892 34333 170854 172251 172251 1 TELAEPIAIRPTSETVMYPAYAK ADFAPEVAWVTRSGKTELAEPIAIRPTSET IRPTSETVMYPAYAKWVQSHRDLPIKLNQW K T E A K W 4 1 0 0 0 0 3 0 0 2 1 1 1 0 3 1 3 0 2 1 0 0 23 1 2550.304 P07814 P07814 1110 1132 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 1.1985E-07 43.497 By MS/MS By MS/MS By MS/MS 3 1 2 0.71528 0.69203 44.973 6 Median 0.6894 0.68603 12.3 3 0 Median 0.74214 0.69808 NaN 1 0 Median 0.41534 0.4844 88.419 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81932000 47484000 34448000 65537000 37434000 28103000 8569800 4682400 3887400 7824500 5366900 2457600 0 0 0 0 0 0 0 0 0 32658 1892 34334 170855;170856;170857;170858;170859;170860 172252;172253;172254;172255;172256;172257;172258;172259 172253 8 TELEDTLDSTAAQQELR EKQKRDLGEELEALKTELEDTLDSTAAQQE LEDTLDSTAAQQELRSKREQEVNILKKTLE K T E L R S 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 1 3 0 0 0 0 0 17 0 1918.912 P35579 P35579 1146 1162 MYH9 Myosin-9 yes yes 2 0.047289 21.557 By matching By MS/MS By matching 1 1 1 1.0463 0.89379 24.581 3 Plateau 0.89311 0.86199 NaN 1 0 Median 1.0463 0.89379 NaN 1 0 Median 0.51696 0.57407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11726000 5820700 5905700 4102600 2079700 2022900 6081400 2740900 3340500 1542400 1000100 542300 0 0 0 0 0 0 0 0 0 32659 2244 34335 170861;170862;170863 172260 172260 1 TELGFTNYIR YYHYGKFAEKYDSDRTELGFTNYIRALREG YDSDRTELGFTNYIRALREGDHERLGKKKE R T E I R A 0 1 1 0 0 0 1 1 0 1 1 0 0 1 0 0 2 0 1 0 0 0 10 0 1212.6139 Q14554 Q14554 493 502 PDIA5 Protein disulfide-isomerase A5 yes yes 2 0.025636 49.715 By MS/MS 1 1.1193 1.151 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1193 1.151 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5349400 2581700 2767700 0 0 0 0 0 0 5349400 2581700 2767700 0 0 0 0 0 0 0 0 0 32660 2880 34336 170864 172261 172261 1 TELHGQLISVEK SSSTEVSRCIAHLHRTELHGQLISVEKVKG LHRTELHGQLISVEKVKGDPSKKEMKKEND R T E E K V 0 0 0 0 0 1 2 1 1 1 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1352.73 Q9NWH9;H7C3F4;H7BXE3 Q9NWH9 448 459 SLTM SAFB-like transcription modulator yes no 2;3 5.1508E-06 118.9 By matching By MS/MS By MS/MS 1 4 2 0.61641 0.55572 37.937 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51484 0.43903 NaN 1 0 Median 0.57192 0.59188 38.006 4 2 Median 0.90697 0.74655 45.808 2 0 Median 61517000 38802000 22715000 0 0 0 0 0 0 0 0 0 2407900 1660800 747160 52440000 33331000 19109000 6668800 3810600 2858200 32661 4149 34337 170865;170866;170867;170868;170869;170870;170871 172262;172263;172264;172265;172266;172267;172268;172269 172265 8 TELISVSEVHPSR EPMELDGPKGTGYIKTELISVSEVHPSRLQ IKTELISVSEVHPSRLQTTDNLLPMSPEEF K T E S R L 0 1 0 0 0 0 2 0 1 1 1 0 0 0 1 3 1 0 0 2 0 0 13 0 1452.7573 P42224 P42224 704 716 STAT1 Signal transducer and activator of transcription 1-alpha/beta yes yes 2;3 3.3165E-05 91.855 By MS/MS By MS/MS By matching 2 2 1 0.94624 0.88322 12.866 5 Median 0.85067 0.8265 13.177 2 2 Median 0.91143 0.78976 20.108 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0745 0.88322 NaN 1 0 Median 15579000 7796800 7782000 7102900 3454800 3648100 7815300 3975200 3840100 0 0 0 0 0 0 0 0 0 660740 366850 293890 32662 2308 34338 170872;170873;170874;170875;170876 172270;172271;172272;172273;172274 172273 5 TELLGEETPMAADEGSAEK AVPARGEPQQDCCVKTELLGEETPMAADEG GEETPMAADEGSAEKQAGEAHMAADGETNG K T E E K Q 3 0 0 1 0 0 5 2 0 0 2 1 1 0 1 1 2 0 0 0 0 0 19 0 1976.8885 Q9H9B1;A0A1B0GUD1;A0A1B0GVZ8;A0A0D9SFX4;A0A1B0GW79 Q9H9B1 23 41 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 2.9169E-07 62.14 By MS/MS 1 0.5046 0.54634 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5046 0.54634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3089900 1840600 1249300 0 0 0 0 0 0 3089900 1840600 1249300 0 0 0 0 0 0 0 0 0 32663 3997 34339 170877 172275 172275 1 TELLQRPGIEDVAVLKK TEELNKEATVIQDLKTELLQRPGIEDVAVL LLQRPGIEDVAVLKKELVQVQTLMDNMTLE K T E K K E 1 1 0 1 0 1 2 1 0 1 3 2 0 0 1 0 1 0 0 2 0 0 17 2 1908.1044 Q15075 Q15075 212 228 EEA1 Early endosome antigen 1 yes yes 3;4 0.0007391 35.473 By MS/MS 2 0.80338 0.84923 9.6251 2 Median 0.80338 0.84923 9.6251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24637000 13696000 10941000 24637000 13696000 10941000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32664 2926 34340 170878;170879 172276;172277;172278 172278 3 TELPQFVSYFQQR GPEGPPWLPRTFNLRTELPQFVSYFQQRER LRTELPQFVSYFQQRERWGEDNHWICKPWN R T E Q R E 0 1 0 0 0 3 1 0 0 0 1 0 0 2 1 1 1 0 1 1 0 0 13 0 1641.8151 Q14166 Q14166 395 407 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.00049996 72.006 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.99298 0.97089 19.986 5 Median 1.0071 0.97432 0.70607 2 0 Median 1.1186 0.97089 NaN 1 0 Median 0.99298 1.0558 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75423 0.6398 NaN 1 0 Median 18371000 9147000 9223900 12764000 6377300 6387000 3513500 1626000 1887500 1998300 1090100 908240 0 0 0 0 0 0 94789 53624 41166 32665 2861 34341 170880;170881;170882;170883;170884 172279;172280;172281;172282;172283;172284;172285;172286;172287 172281 9 TELPVTENVQTIPPPYVVR STFNLEGLFSLIQQKTELPVTENVQTIPPP VTENVQTIPPPYVVRTILVYSRPPCQPQ__ K T E V R T 0 1 1 0 0 1 2 0 0 1 1 0 0 0 4 0 3 0 1 4 0 0 19 0 2151.1576 M0R0I0;Q9NWV8;J3KQS6 M0R0I0 194 212 BABAM1 BRISC and BRCA1-A complex member 1 yes no 2 9.8345E-10 72.089 By MS/MS By MS/MS 1 1 0.48391 0.50181 11.06 2 Median 0.46288 0.46406 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.50589 0.54263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4083800 2853100 1230700 2541800 1805400 736430 0 0 0 1542000 1047700 494280 0 0 0 0 0 0 0 0 0 32666 1427 34342 170885;170886 172288;172289 172288 2 TELQGLIGQLDEVSLEK LLQAQNPSELYLSSKTELQGLIGQLDEVSL LQGLIGQLDEVSLEKNPCIREARRRAVIEV K T E E K N 0 0 0 1 0 2 3 2 0 1 4 1 0 0 0 1 1 0 0 1 0 0 17 0 1870.9888 Q9UL15 Q9UL15 308 324 BAG5 BAG family molecular chaperone regulator 5 yes yes 2 4.6458E-05 62.89 By MS/MS 1 0.78506 0.69064 NaN 1 Median NaN NaN NaN 0 0 Median 0.78506 0.69064 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 816200 441820 374380 0 0 0 816200 441820 374380 0 0 0 0 0 0 0 0 0 0 0 0 32667 4319 34343 170887 172290 172290 1 TELQNTLR SDESGDEESVSQTDKTELQNTLRTLSSKVE SVSQTDKTELQNTLRTLSSKVEDLSTCNDL K T E L R T 0 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 8 0 973.51926 P22059 P22059 205 212 OSBP Oxysterol-binding protein 1 yes yes 2 0.036811 37.558 By MS/MS 1 1.2113 1.068 NaN 1 Median NaN NaN NaN 0 0 Median 1.2113 1.068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1369800 623530 746320 0 0 0 1369800 623530 746320 0 0 0 0 0 0 0 0 0 0 0 0 32668 2096 34344 170888 172291 172291 1 TELQSALLLRR ______________________________ ______________________________ M T E R R Q 1 2 0 0 0 1 1 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 11 1 1298.767 P62253;I3L0Q0;I3L2Q4 P62253 2 12 UBE2G1 Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed yes no 2 0.0018449 51.346 By MS/MS 1 1.1993 1.257 NaN 1 Median 1.1993 1.257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3158000 1455200 1702800 3158000 1455200 1702800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32669 2575 34345 170889 172292 172292 1 TELSMPIQSHVIMTPQSQSAGR EAVATSVLTQMASQRTELSMPIQSHVIMTP QSHVIMTPQSQSAGR_______________ R T E G R - 1 1 0 0 0 3 1 1 1 2 1 0 2 0 2 4 2 0 0 1 0 0 22 0 2397.1781 P17544 P17544 473 494 ATF7 Cyclic AMP-dependent transcription factor ATF-7 yes yes 3 0.00013419 32.081 By MS/MS 1 0.66977 0.6761 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66977 0.6761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8977000 5353700 3623300 0 0 0 0 0 0 8977000 5353700 3623300 0 0 0 0 0 0 0 0 0 32670 2042 34346 170890 172293 172293 1 TELSQSDMFDQR VNVAGLVLAGSADFKTELSQSDMFDQRLQS DFKTELSQSDMFDQRLQSKVLKLVDISYGG K T E Q R L 0 1 0 2 0 2 1 0 0 0 1 0 1 1 0 2 1 0 0 0 0 0 12 0 1455.63 B7Z7P8;P62495 B7Z7P8 220 231 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 4.5635E-22 202.36 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3157 1.2746 13.037 4 Median 1.2972 1.2478 NaN 1 0 Median 1.2109 1.0272 NaN 1 0 Median 1.3344 1.302 NaN 1 0 Median 1.6168 1.3909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65219000 28861000 36358000 9026600 4219300 4807200 4810500 1929300 2881100 30098000 12801000 17296000 21284000 9910400 11374000 0 0 0 0 0 0 32671 638 34347 170891;170892;170893;170894 172294;172295;172296;172297;172298;172299 172297 6 TELTQIK SAKIKLKSSELQAIKTELTQIKSNIDALLS SSELQAIKTELTQIKSNIDALLSRLEQIAA K T E I K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 7 0 831.47018 Q9UKM9;Q5QPL9;Q5QPM0 Q9UKM9 192 198 RALY RNA-binding protein Raly yes no 2 0.0096554 83.614 By matching By MS/MS By MS/MS 2 2 2 1.3098 1.13 12.723 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5085 1.2998 15.296 2 0 Median 1.1299 1.1414 14.452 2 0 Median 1.3098 1.0797 1.9547 2 0 Median 33129000 15064000 18064000 0 0 0 0 0 0 0 0 0 1833900 674090 1159800 16543000 7942400 8600400 14752000 6447600 8304300 32672 4313 34348 170895;170896;170897;170898;170899;170900 172300;172301;172302;172303 172300 4 TEMDWVLK ESMGHRYIEVFKSHRTEMDWVLKHSGPNSA EVFKSHRTEMDWVLKHSGPNSADSANDGFV R T E L K H 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 8 0 1020.495 P52597;A0A1B0GW42 P52597 91 98 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes no 2 0.011256 57.281 By MS/MS By matching By MS/MS By matching By MS/MS 2 4 2 2 4 1.1713 1.0617 11.618 14 Median 1.1634 1.0967 24.743 2 0 Median 1.273 1.0797 4.8841 4 0 Median 0.96028 0.9212 6.4842 2 0 Median 1.2081 1.0531 4.8528 2 0 Median 1.0747 1.1127 11.42 4 0 Median NaN NaN NaN 0 0 Median 124520000 59858000 64659000 15879000 7749800 8129300 8568500 3558200 5010300 44967000 22569000 22397000 3957700 1702700 2254900 51145000 24278000 26867000 0 0 0 32673 2452 34349 170901;170902;170903;170904;170905;170906;170907;170908;170909;170910;170911;170912;170913;170914 172304;172305;172306;172307;172308;172309 172305 6 TEMEDLMSSK MEQKAELERLNKQFRTEMEDLMSSKDDVGK NKQFRTEMEDLMSSKDDVGKSVHELEKSKR R T E S K D 0 0 0 1 0 0 2 0 0 0 1 1 2 0 0 2 1 0 0 0 0 0 10 0 1169.4944 P35579 P35579 1504 1513 MYH9 Myosin-9 yes yes 2 0.0015352 64.654 By MS/MS By MS/MS By matching 1 4 1 1.1123 0.97027 33.881 6 Median 2.2181 2.1347 NaN 1 0 Median 1.1123 0.97027 5.8551 4 0 Median NaN NaN NaN 0 0 Median 0.92838 0.84399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44641000 19905000 24736000 6348000 1482900 4865100 37504000 17959000 19545000 0 0 0 789130 463110 326030 0 0 0 0 0 0 32674 2244 34350;34351 170915;170916;170917;170918;170919;170920 172310;172311;172312;172313;172314;172315 172312 998;999 6 TEMEDLMSSKDDVGK MEQKAELERLNKQFRTEMEDLMSSKDDVGK TEMEDLMSSKDDVGKSVHELEKSKRALEQQ R T E G K S 0 0 0 3 0 0 2 1 0 0 1 2 2 0 0 2 1 0 0 1 0 0 15 1 1683.7332 P35579 P35579 1504 1518 MYH9 Myosin-9 yes yes 2;3 2.5895E-09 161.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 4 2 1 3 2 1.1175 1.1153 20.174 18 Median 1.1415 1.1704 19.458 6 0 Median 1.0709 1.0319 6.0063 4 0 Median 0.88421 1.024 26.241 2 0 Median 1.9183 1.7876 NaN 1 0 Median 1.1287 1.2633 11.055 3 0 Median 1.0825 0.9836 4.8163 2 0 Median 300980000 133800000 167180000 218290000 94440000 123850000 34706000 16047000 18659000 26594000 13594000 13000000 664910 246020 418890 19965000 9159600 10805000 758170 314230 443940 32675 2244 34352;34353 170921;170922;170923;170924;170925;170926;170927;170928;170929;170930;170931;170932;170933;170934;170935;170936;170937;170938 172316;172317;172318;172319;172320;172321;172322;172323;172324;172325;172326;172327;172328;172329;172330;172331;172332 172316 998;999 17 TEMENEFVLIK VEDFKNKYEDEINKRTEMENEFVLIKKDVD INKRTEMENEFVLIKKDVDEAYMNKVELES R T E I K K 0 0 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1351.6694 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 P05787 187 197 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00015157 105.52 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 4 3 1.2038 1.1065 18.144 17 Median 1.3179 1.2236 36.835 2 0 Median 1.7206 1.4663 17.758 3 0 Median 1.1433 1.0885 13.945 4 0 Median 1.1613 1.0186 18.885 2 0 Median 1.2038 1.1798 1.5178 3 0 Median 1.1929 0.98534 8.4467 3 0 Median 665700000 295940000 369760000 23458000 10931000 12527000 14358000 5161400 9196700 479690000 215320000 264370000 36308000 16716000 19592000 81534000 33991000 47543000 30359000 13825000 16534000 + 32676 750 34354;34355 170939;170940;170941;170942;170943;170944;170945;170946;170947;170948;170949;170950;170951;170952;170953;170954;170955;170956 172333;172334;172335;172336;172337;172338;172339;172340;172341;172342;172343;172344;172345;172346;172347;172348;172349;172350;172351;172352;172353;172354;172355;172356;172357 172338 277 25 TEMENEFVLIKK VEDFKNKYEDEINKRTEMENEFVLIKKDVD NKRTEMENEFVLIKKDVDEAYMNKVELESR R T E K K D 0 0 1 0 0 0 3 0 0 1 1 2 1 1 0 0 1 0 0 1 0 0 12 1 1479.7643 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045 P05787 187 198 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 6.8085E-06 114.4 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 2 10 7 13 9 1.1864 1.1792 26.328 44 Median 1.0609 1.0097 42.367 4 1 Median 1.4598 1.3441 9.7619 2 0 Median 1.1864 1.2367 8.6958 10 2 Median 1.4032 1.3844 24.711 7 1 Linear 1.3802 1.4945 17.855 12 1 Median 1.1155 1.0046 25.894 9 1 Median 1231900000 530840000 701030000 98352000 52303000 46048000 2986400 1273000 1713500 336890000 145840000 191060000 67358000 28797000 38560000 565900000 229190000 336710000 160380000 73443000 86939000 + 32677 750 34356;34357 170957;170958;170959;170960;170961;170962;170963;170964;170965;170966;170967;170968;170969;170970;170971;170972;170973;170974;170975;170976;170977;170978;170979;170980;170981;170982;170983;170984;170985;170986;170987;170988;170989;170990;170991;170992;170993;170994;170995;170996;170997;170998;170999;171000;171001 172358;172359;172360;172361;172362;172363;172364;172365;172366;172367;172368;172369;172370;172371;172372;172373;172374;172375;172376;172377;172378;172379;172380;172381;172382;172383;172384;172385;172386;172387;172388;172389;172390;172391;172392;172393;172394;172395;172396;172397;172398;172399;172400;172401;172402;172403;172404;172405;172406 172392 277 49 TEMQDNTYPEILR RPGKCFRLYTEKAYKTEMQDNTYPEILRSN YKTEMQDNTYPEILRSNLGSVVLQLKKLGI K T E L R S 0 1 1 1 0 1 2 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 13 0 1608.7454 O43143 O43143 492 504 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 3.8663E-07 141.95 By MS/MS By MS/MS By matching By MS/MS 1 1 1 3 0.89504 0.90695 6.9131 6 Median 0.96837 0.916 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90437 0.95896 NaN 1 0 Median 1.0533 0.90739 NaN 1 0 Median 0.88562 0.81361 6.4042 3 0 Plateau NaN NaN NaN 0 0 Median 50314000 23812000 26502000 17194000 7305300 9888400 0 0 0 14879000 7168800 7710000 1489600 671420 818220 16752000 8666700 8085100 0 0 0 32678 1553 34358 171002;171003;171004;171005;171006;171007 172407;172408;172409;172410;172411;172412;172413;172414;172415;172416;172417;172418;172419;172420;172421 172408 15 TEMQNMIELSR GTIKGSKVTLLLSSKTEMQNMIELSRRRFE LSSKTEMQNMIELSRRRFETANLDIPPANA K T E S R R 0 1 1 0 0 1 2 0 0 1 1 0 2 0 0 1 1 0 0 0 0 0 11 0 1350.6272 Q9NTZ6;A6PVI1;A6PVI0;Q5JX62 Q9NTZ6 77 87 RBM12 RNA-binding protein 12 yes no 2 0.0001134 121.73 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.1123 1.1761 29.487 5 Median 1.0201 0.98305 NaN 1 0 Median 1.5439 1.3197 53.826 2 0 Median 1.1123 1.1832 NaN 1 0 Median 1.3771 1.1761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19536000 8413900 11122000 10062000 4540100 5522200 1071000 475100 595850 7541000 3021100 4519900 861310 377620 483690 0 0 0 0 0 0 32679 4111 34359 171008;171009;171010;171011;171012 172422;172423;172424 172422 3 TEMSEVLTEILR LTDKVTDLLGGLFSKTEMSEVLTEILRVDP FSKTEMSEVLTEILRVDPAFDKDRFLKQCE K T E L R V 0 1 0 0 0 0 3 0 0 1 2 0 1 0 0 1 2 0 0 1 0 0 12 0 1419.7279 O43615;M0QXU7;M0QXM9 O43615 294 305 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.0010444 64.297 By MS/MS By MS/MS By MS/MS By matching 3 4 1 1 1.2778 1.11 30.057 9 Median 1.0884 1.11 51.51 3 0 Median 1.2328 1.0575 9.3815 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4029 1.5113 NaN 1 0 Median 1.321 1.1101 NaN 1 0 Median 11126000 5062000 6064100 2337700 1310100 1027600 5137400 2325500 2811900 0 0 0 0 0 0 2003000 682790 1320200 1648000 743700 904310 32680 1577 34360;34361 171013;171014;171015;171016;171017;171018;171019;171020;171021 172425;172426;172427;172428 172428 508 4 TEMVTISDASQR VLPQIICCSEPPVVKTEMVTISDASQRTEI VVKTEMVTISDASQRTEISTKEVPIVQTET K T E Q R T 1 1 0 1 0 1 1 0 0 1 0 0 1 0 0 2 2 0 0 1 0 0 12 0 1336.6293 O43491;E9PHY5;Q6ZSX4;Q6R5J7;E9PN54 O43491 875 886 EPB41L2 Band 4.1-like protein 2 yes no 2 3.3406E-08 109.42 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1.0285 1.0497 18.932 5 Median 1.3004 1.2532 NaN 1 0 Median 1.0285 0.86194 NaN 1 0 Median 1.0013 1.0929 5.7091 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96968 0.79708 NaN 1 1 Median 35378000 15656000 19722000 9744800 4003700 5741100 8531600 3639000 4892700 16466000 7680900 8785300 0 0 0 0 0 0 635190 332650 302540 32681 1573 34362 171022;171023;171024;171025;171026;171027;171028 172429;172430;172431;172432;172433;172434;172435;172436 172432 8 TENLLGSYFPK AQAKVDVFREDLCTKTENLLGSYFPKKISE LCTKTENLLGSYFPKKISELDAFLKEPALN K T E P K K 0 0 1 0 0 0 1 1 0 0 2 1 0 1 1 1 1 0 1 0 0 0 11 0 1267.6449 Q06323 Q06323 25 35 PSME1 Proteasome activator complex subunit 1 yes yes 2 0.00022785 73.985 By MS/MS 1 0.83136 0.76785 NaN 1 Median 0.83136 0.76785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11339000 6170100 5169200 11339000 6170100 5169200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32682 2724 34363 171029 172437;172438 172438 2 TENNDHINLK ______________________________ KEGVKTENNDHINLKVAGQDGSVVQFKIKR K T E L K V 0 0 3 1 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1196.5786 P61956 P61956 12 21 SUMO2 Small ubiquitin-related modifier 2 yes yes 2 0.00064971 72.547 By MS/MS By matching 1 1 1.3859 1.2913 27.271 2 Median NaN NaN NaN 0 0 Median 1.8041 1.5659 NaN 1 0 Median 1.0646 1.0648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3215100 1359200 1855900 0 0 0 1384800 507320 877500 1830300 851850 978410 0 0 0 0 0 0 0 0 0 32683 2562 34364 171030;171031 172439;172440 172440 2 TENPLILIDEVDK GAMPGKIIQCLKKTKTENPLILIDEVDKIG TKTENPLILIDEVDKIGRGYQGDPSSALLE K T E D K I 0 0 1 2 0 0 2 0 0 2 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1497.7926 K7EKE6;P36776;K7EJE8 K7EKE6 468 480 LONP1 Lon protease homolog, mitochondrial yes no 2 0.038315 26.119 By matching By MS/MS By matching 1 1 1 1.1355 0.98285 7.5442 3 Median NaN NaN NaN 0 0 Median 1.252 1.0707 NaN 1 0 Median 0.86534 0.92122 NaN 1 0 Median 1.1355 0.98285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490100 1728800 1761300 0 0 0 1229200 514350 714820 2061500 1132200 929340 199410 82297 117110 0 0 0 0 0 0 32684 1370 34365 171032;171033;171034 172441 172441 1 TEPGIGPEGNMSTGAPQPNLMPSNPDSGMYSPSR PRQHYPYGGPYDRVRTEPGIGPEGNMSTGA LMPSNPDSGMYSPSRYPPQQQQQQQQRHDS R T E S R Y 1 1 3 1 0 1 2 5 0 1 1 0 3 0 7 5 2 0 1 0 0 0 34 0 3472.5334 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;H0YCU6 O14497 1290 1323 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.064578 13.541 By MS/MS 1 0.32114 0.35672 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32114 0.35672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1444100 1294400 149740 0 0 0 0 0 0 1444100 1294400 149740 0 0 0 0 0 0 0 0 0 32685 1480 34366 171035 172442 172442 1 TEPGTLYFASPFGPSPNGPR STAGKSSESRRNDIKTEPGTLYFASPFGPS LYFASPFGPSPNGPRSGLISVAITLHPTAA K T E P R S 1 1 1 0 0 0 1 3 0 0 1 0 0 2 5 2 2 0 1 0 0 0 20 0 2091.0062 Q8NEZ4;H7BY37;H0Y765;H7C2V8 Q8NEZ4 4057 4076 KMT2C Histone-lysine N-methyltransferase 2C yes no 2 0.026606 32.734 By MS/MS 1 0.35549 0.40075 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35549 0.40075 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1167000 894730 272320 0 0 0 0 0 0 1167000 894730 272320 0 0 0 0 0 0 0 0 0 32686 3431 34367 171036 172443 172443 1 TEPINTTYSYTDFQK CCCGWLTKTVKETTRTEPINTTYSYTDFQK TEPINTTYSYTDFQKAVNKLLTASL_____ R T E Q K A 0 0 1 1 0 1 1 0 0 1 0 1 0 1 1 1 4 0 2 0 0 0 15 0 1806.8312 Q9NXF7 Q9NXF7 192 206 DCAF16 DDB1- and CUL4-associated factor 16 yes yes 2 2.3467E-05 85.288 By MS/MS By MS/MS 2 1 0.99914 0.82163 15.563 3 Median 0.8727 0.79076 21.786 2 0 Median 0.99914 0.82163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13506000 7493600 6012000 9367600 4971400 4396200 4137900 2522200 1615700 0 0 0 0 0 0 0 0 0 0 0 0 32687 4164 34368 171037;171038;171039 172444;172445;172446;172447 172444 4 TEPTAQQNLALQLAEK MASLDQPTQTVVMHRTEPTAQQNLALQLAE EPTAQQNLALQLAEKLGSLVENNERVFDHK R T E E K L 3 0 1 0 0 3 2 0 0 0 3 1 0 0 1 0 2 0 0 0 0 0 16 0 1753.921 Q99613;B5ME19 Q99613 847 862 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 5.2981E-10 113.65 By MS/MS By matching By MS/MS By matching By MS/MS 2 2 2 1 1 0.97862 0.89639 14.476 8 Median 0.937 0.89639 1.5889 2 0 Median 0.90655 0.79207 3.4594 2 0 Median 1.0241 1.1134 0.14102 2 0 Median 1.0001 0.85726 NaN 1 0 Median 1.0356 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median 75605000 37095000 38510000 43681000 21724000 21957000 8979900 4355100 4624700 17224000 8089900 9134300 3096900 1454600 1642300 2623100 1471200 1151900 0 0 0 32688 3757 34369 171040;171041;171042;171043;171044;171045;171046;171047 172448;172449;172450;172451;172452;172453;172454;172455;172456;172457 172449 10 TEQAISFAK ______________________________ ______________________________ M T E A K D 2 0 0 0 0 1 1 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 9 0 993.51311 P12236 P12236 2 10 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 2 0.00080417 98.033 By MS/MS By MS/MS 3 1 1.5567 1.1575 21.614 4 Linear 1.6217 1.0748 26.457 3 2 Plateau 1.3968 1.2466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93501000 39962000 53539000 63117000 27338000 35778000 30384000 12623000 17761000 0 0 0 0 0 0 0 0 0 0 0 0 32689 1977 34370 171048;171049;171050;171051 172458;172459;172460;172461 172458 4 TEQEEDEELLSESR EKQSLISAGDYRHRRTEQEEDEELLSESRK RTEQEEDEELLSESRKTSNVCIRFEVSPSY R T E S R K 0 1 0 1 0 1 6 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 14 0 1692.7326 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 149 162 SMARCA1 Probable global transcription activator SNF2L1 no no 2 6.9085E-08 101.47 By MS/MS By matching By matching 1 1 1 1.0626 1.0226 17.86 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92968 1.0226 NaN 1 0 Median 1.0626 0.90562 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5519 1.2873 NaN 1 0 Median 7519200 3777700 3741500 0 0 0 0 0 0 5859000 3057600 2801500 1322400 599760 722670 0 0 0 337780 120370 217410 32690 167;643 34371 171052;171053;171054 172462 172462 1 TEQEEDEELLTESSK EKQNLLSVGDYRHRRTEQEEDEELLTESSK TEQEEDEELLTESSKATNVCTRFEDSPSYV R T E S K A 0 0 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 15 0 1765.7741 O60264 O60264 146 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 2.134E-25 149.93 By MS/MS By MS/MS 2 1 0.91727 0.98141 6.2678 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88875 0.95088 4.4691 2 2 Median 1.2387 1.0443 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18447000 9199500 9247400 0 0 0 0 0 0 16836000 8411300 8424900 1610800 788240 822530 0 0 0 0 0 0 32691 1608 34372 171055;171056;171057 172463;172464;172465 172463 3 TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR FQDNHEDGPTAKKLKTEQGGAHFSVSSLAE SVTSVGSVNPAENFRVLVKQKKASFEEASN K T E F R V 3 1 2 0 0 1 3 4 1 0 1 0 0 2 1 6 2 0 0 4 0 0 31 0 3120.4748 P13010 P13010 569 599 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 5.9991E-43 107.45 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 0.79953 0.82913 7.8108 6 Median NaN NaN NaN 0 0 Median 1.0543 0.92895 NaN 1 0 Median 0.78509 0.82842 4.6352 3 0 Median 1.0513 0.89891 NaN 1 0 Median 0.7283 0.77292 NaN 1 0 Median NaN NaN NaN 0 0 Median 22648000 12195000 10453000 0 0 0 1393500 575500 818000 18267000 10031000 8236400 657160 347210 309960 2330600 1241500 1089100 0 0 0 32692 1986 34373 171058;171059;171060;171061;171062;171063 172466;172467;172468;172469;172470;172471;172472;172473;172474 172469 9 TEQGPQVDETQFK ARAKSRVVGNPFDSKTEQGPQVDETQFKKI SKTEQGPQVDETQFKKILGYINTGKQEGAK K T E F K K 0 0 0 1 0 3 2 1 0 0 0 1 0 1 1 0 2 0 0 1 0 0 13 0 1505.6998 P05091;S4R3S4 P05091 356 368 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00012318 84.17 By MS/MS By MS/MS 1 1 1.1688 1.0439 32.674 2 Median 0.88207 0.82852 NaN 1 0 Median 1.5486 1.3152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13587000 5970900 7616600 6369400 3293100 3076300 7218100 2677800 4540300 0 0 0 0 0 0 0 0 0 0 0 0 32693 1860 34374 171064;171065 172475;172476;172477;172478 172475 4 TEQGTVLIGSEHGLIEVDPVSR RDIQGPGNPQCFSLRTEQGTVLIGSEHGLI IGSEHGLIEVDPVSREVKNEVSLVAEGFLP R T E S R E 0 1 0 1 0 1 3 3 1 2 2 0 0 0 1 2 2 0 0 3 0 0 22 0 2335.202 O95163 O95163 28 49 IKBKAP Elongator complex protein 1 yes yes 3 1.6279E-07 48.656 By MS/MS By matching By matching 2 1 1 0.80642 0.75181 22.881 4 Median 0.69359 0.67601 15.371 2 0 Median 0.85493 0.74999 NaN 1 0 Median 0.97436 1.0548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8165000 4115100 4049800 6585900 3279700 3306200 322720 156190 166530 1256400 679260 577150 0 0 0 0 0 0 0 0 0 32694 1749 34375 171066;171067;171068;171069 172479 172479 1 TEQLIIR LEKEYFDQHFGPFFRTEQLIIRAPLTDKHI QHFGPFFRTEQLIIRAPLTDKHIYQPYPSG R T E I R A 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 7 0 871.51272 O15118;K7EQ23 O15118 405 411 NPC1 Niemann-Pick C1 protein yes no 2 0.017757 64.803 By MS/MS By MS/MS 1 1 1.0763 0.97064 3.5819 2 Median 0.99158 0.99554 NaN 1 1 Median 1.1682 0.94636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13044000 5482700 7560800 1708100 819410 888720 11335000 4663300 6672100 0 0 0 0 0 0 0 0 0 0 0 0 32695 1520 34376 171070;171071 172480;172481 172481 2 TEQMTLR ______________________________ ______________________________ M T E L R G 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 7 0 877.43275 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;D6RFZ9;D6RBD0;E9PD14;D6RAU2;D6RGK8;D6R909;D6RHJ5;D6RDI0 P63244 2 8 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00049941 141.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.269 1.0958 6.1017 5 Median 1.2042 1.1256 NaN 1 0 Median 1.3046 1.085 NaN 1 0 Median 1.2522 1.239 NaN 1 0 Median 1.2904 1.077 2.4455 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53586000 24125000 29461000 34398000 15513000 18885000 7803500 3413200 4390300 4401000 2107700 2293300 6983200 3090600 3892600 0 0 0 0 0 0 32696 2624 34377;34378 171072;171073;171074;171075;171076 172482;172483;172484;172485;172486;172487;172488;172489;172490 172483 1289 9 TEQSVALLEQK RLMLLSRDDSGSGSKTEQSVALLEQKWHVV SGSKTEQSVALLEQKWHVVSSKMEERKSKL K T E Q K W 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 11 0 1244.6612 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6513 6523 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0010712 82.914 By MS/MS 1 1.1066 0.9704 NaN 1 Median NaN NaN NaN 0 0 Median 1.1066 0.9704 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7199400 3285400 3914000 0 0 0 7199400 3285400 3914000 0 0 0 0 0 0 0 0 0 0 0 0 32697 1220 34379 171077 172491 172491 1 TEQTEKAEEETR QSQEASQFERKDEPKTEQTEKAEEETRMEN EPKTEQTEKAEEETRMENSLPAKVPSRGDE K T E T R M 1 1 0 0 0 1 5 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 12 1 1449.6583 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1 Q6Y7W6 402 413 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 0.00048847 51.875 By matching By MS/MS 2 1 0.99178 0.94905 11.614 3 Plateau 0.85976 0.88155 15.28 2 0 Median 0.99178 0.94905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1237500 599080 638390 350940 184650 166290 886520 414430 472100 0 0 0 0 0 0 0 0 0 0 0 0 32698 3192 34380 171078;171079;171080 172492;172493 172493 2 TESAVSQMQSVIELGR YLMLPRVREELIDKKTESAVSQMQSVIELG ESAVSQMQSVIELGRVIRDRKTIPIKYPLK K T E G R V 1 1 0 0 0 2 2 1 0 1 1 0 1 0 0 3 1 0 0 2 0 0 16 0 1733.8618 P41252;A0A0A0MSX9;J3KR24 P41252 818 833 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 1.106E-10 109.24 By MS/MS By MS/MS By matching 1 1 1 1.2981 1.1237 3.8981 3 Median 1.0906 1.0505 NaN 1 0 Median 1.3309 1.1242 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2981 1.1237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17884000 7916300 9967800 12668000 5798200 6869300 4813300 1953300 2860000 0 0 0 403250 164710 238540 0 0 0 0 0 0 32699 2302 34381 171081;171082;171083 172494;172495;172496 172495 3 TESDDLHTFLLEIK ACFQVGTSEEMKMLRTESDDLHTFLLEIKE RTESDDLHTFLLEIKETTESLHGDISSLKT R T E I K E 0 0 0 2 0 0 2 0 1 1 3 1 0 1 0 1 2 0 0 0 0 0 14 0 1659.8356 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 730 743 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.019015 28.013 By MS/MS By matching 1 1 1.4792 1.4369 48.904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91544 1.0168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3901 2.0306 NaN 1 0 Median 1836700 942280 894380 0 0 0 0 0 0 1727100 905710 821440 0 0 0 0 0 0 109510 36573 72937 32700 467 34382 171084;171085 172497 172497 1 TESLIQQYEAISLLNSER FGTCGEEQKTVLQEKTESLIQQYEAISLLN LIQQYEAISLLNSERYARLERAQVLVNQFW K T E E R Y 1 1 1 0 0 2 3 0 0 2 3 0 0 0 0 3 1 0 1 0 0 0 18 0 2093.0641 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5858 5875 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 4.2303E-32 144.57 By MS/MS By matching 3 1 0.95286 0.95553 12.014 4 Median 0.9319 0.93468 2.6869 3 2 Median 1.3809 1.1995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11997000 6233500 5763800 11403000 5957300 5446100 593940 276200 317740 0 0 0 0 0 0 0 0 0 0 0 0 32701 1220 34383 171086;171087;171088;171089 172498;172499;172500;172501 172501 4 TESNQEVANPEHYIK ETTPTPNPPTTEEEKTESNQEVANPEHYIK TESNQEVANPEHYIKHPLQNRWALWFFKND K T E I K H 1 0 2 0 0 1 3 0 1 1 0 1 0 0 1 1 1 0 1 1 0 0 15 0 1757.822 D6RBW1;P06730;H0Y8J7;D6RFJ3 D6RBW1 50 64 EIF4E Eukaryotic translation initiation factor 4E yes no 3 0.0040217 41.967 By MS/MS 1 1.1309 0.96399 NaN 1 Median NaN NaN NaN 0 0 Median 1.1309 0.96399 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1372300 613960 758360 0 0 0 1372300 613960 758360 0 0 0 0 0 0 0 0 0 0 0 0 32702 818 34384 171090 172502 172502 1 TESPATAAETASEELDNR DGASSDAEPEPPSGRTESPATAAETASEEL PATAAETASEELDNRSLEEILNSIPPPPPP R T E N R S 4 1 1 1 0 0 4 0 0 0 1 0 0 0 1 2 3 0 0 0 0 0 18 0 1890.8443 Q9NTJ3;C9JR83;C9JWF0;C9IYK2;C9JJ64 Q9NTJ3 39 56 SMC4 Structural maintenance of chromosomes protein 4 yes no 2 1.9447E-11 107.14 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.94701 0.85378 25.358 4 Median 0.92976 0.87271 NaN 1 0 Median 0.96458 0.83527 NaN 1 0 Median 1.0687 1.1753 NaN 1 0 Median 0.71753 0.6326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20147000 10330000 9816900 11505000 5679000 5826400 670950 312830 358120 7206700 3909000 3297800 764050 429430 334630 0 0 0 0 0 0 32703 4108 34385 171091;171092;171093;171094 172503;172504 172503 2 TESSGIETEPTVHHLPLSTEK VTSTSQSWVQKMETKTESSGIETEPTVHHL ETEPTVHHLPLSTEKVVQETVLVEERRVVH K T E E K V 0 0 0 0 0 0 4 1 2 1 2 1 0 0 2 3 4 0 0 1 0 0 21 0 2291.1281 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 661 681 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 5.3539E-09 55.206 By MS/MS By matching 1 1 0.73571 0.68811 14.391 2 Median 0.78648 0.76182 NaN 1 0 Median 0.68821 0.62153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10204000 5572200 4631500 9862200 5377000 4485200 341490 195200 146290 0 0 0 0 0 0 0 0 0 0 0 0 32704 156 34386 171095;171096 172505;172506 172505 2 TESVLIKR TKQCKEEPKEEKVVKTESVLIKRRLSAQGQ KEEKVVKTESVLIKRRLSAQGQAISVVGSL K T E K R R 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 1 944.56548 Q92797;A0A087WUE9;M0R3C7 Q92797 484 491 SYMPK Symplekin yes no 2 0.070531 34.824 By MS/MS 1 0.86252 0.98846 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86252 0.98846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 527720 260120 267600 0 0 0 0 0 0 527720 260120 267600 0 0 0 0 0 0 0 0 0 32705 3558 34387 171097 172507 172507 1 TETIRPASVYTK ATYESCSTAAFKHGRTETIRPASVYTKRCS HGRTETIRPASVYTKRCSEAFVREPSRHSA R T E T K R 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 1 3 0 1 1 0 0 12 1 1364.73 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 499 510 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 3 0.055857 26.753 By MS/MS 1 0.22323 0.20327 NaN 1 Median NaN NaN NaN 0 0 Median 0.22323 0.20327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13459000 11281000 2178500 0 0 0 13459000 11281000 2178500 0 0 0 0 0 0 0 0 0 0 0 0 32706 317 34388 171098 172508 172508 1 TETISFGSVSPGGVK ETLEQKPHFESSTVKTETISFGSVSPGGVK TETISFGSVSPGGVKLEISTKEVPVVHTET K T E V K L 0 0 0 0 0 0 1 3 0 1 0 1 0 1 1 3 2 0 0 2 0 0 15 0 1464.746 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;J3QS83 A0A0A0MRA8 784 798 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 4.1827E-06 80.979 By MS/MS 1 0.8832 0.85837 NaN 1 Median 0.8832 0.85837 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6873400 3392100 3481300 6873400 3392100 3481300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32707 156 34389 171099 172509 172509 1 TETMNVVMETNK VTAKTMAQHEELMKKTETMNVVMETNKMLR MKKTETMNVVMETNKMLREEKERLEQDLQQ K T E N K M 0 0 2 0 0 0 2 0 0 0 0 1 2 0 0 0 3 0 0 2 0 0 12 0 1395.6374 P12270 P12270 1266 1277 TPR Nucleoprotein TPR yes yes 2 4.2461E-07 118.4 By matching By MS/MS By MS/MS By MS/MS 1 2 3 2 0.91844 0.91053 14.934 8 Median 0.93377 0.89102 NaN 1 0 Median 1.1666 1.0276 16.461 2 0 Median 0.81912 0.9064 8.6276 3 2 Median 0.97127 0.90434 30.013 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39196000 18051000 21145000 2771500 1054500 1717000 8987500 3358800 5628700 24280000 12113000 12167000 3157200 1524400 1632800 0 0 0 0 0 0 32708 1978 34390 171100;171101;171102;171103;171104;171105;171106;171107 172510;172511;172512;172513;172514;172515;172516 172512 7 TETQNALKEEEER GRKKIRKILKDDKLRTETQNALKEEEERRK LRTETQNALKEEEERRKRIAEREREREKLR R T E E R R 1 1 1 0 0 1 5 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 13 1 1575.7376 P46100;A0A096LNR8 P46100 1491 1503 ATRX Transcriptional regulator ATRX yes no 3 0.0014331 40.477 By matching By matching By MS/MS 1 1 1 0.84929 0.96258 27.163 3 Median 0.88842 0.9727 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50895 0.60453 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84929 0.96258 NaN 1 0 Median NaN NaN NaN 0 0 Median 4643700 2389300 2254400 790860 433410 357440 0 0 0 1146100 655130 490940 0 0 0 2706800 1300700 1406100 0 0 0 32709 2339 34391 171108;171109;171110 172517 172517 1 TETSETEITTTEIIK DDMAAKAPPGGGTTRTETSETEITTTEIIK TETSETEITTTEIIKRRDVGPYGIRSEYCI R T E I K R 0 0 0 0 0 0 4 0 0 3 0 1 0 0 0 1 6 0 0 0 0 0 15 0 1694.8462 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1935 1949 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 3.7256E-09 138.45 By MS/MS By MS/MS 1 2 0.94487 0.92208 18.568 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86528 0.92208 NaN 1 0 Median 1.1002 1.0243 24.816 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35048000 18642000 16406000 0 0 0 0 0 0 32368000 17374000 14993000 2680300 1267900 1412400 0 0 0 0 0 0 32710 2762 34392 171111;171112;171113 172518;172519;172520;172521 172519 4 TETSETEITTTEIIKR DDMAAKAPPGGGTTRTETSETEITTTEIIK ETSETEITTTEIIKRRDVGPYGIRSEYCIR R T E K R R 0 1 0 0 0 0 4 0 0 3 0 1 0 0 0 1 6 0 0 0 0 0 16 1 1850.9473 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1935 1950 BPTF Nucleosome-remodeling factor subunit BPTF yes no 3 4.2793E-05 60.474 By MS/MS 1 1.1185 1.295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1185 1.295 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5292800 2198100 3094700 0 0 0 0 0 0 5292800 2198100 3094700 0 0 0 0 0 0 0 0 0 32711 2762 34393 171114 172522 172522 1 TETVEEPMEEEEAAK YSQFINFPIYVWSSKTETVEEPMEEEEAAK TETVEEPMEEEEAAKEEKEESDDEAAVEEE K T E A K E 2 0 0 0 0 0 7 0 0 0 0 1 1 0 1 0 2 0 0 1 0 0 15 0 1720.7349 P14625;Q96GW1;A0A1W2PRR1 P14625 286 300 HSP90B1 Endoplasmin yes no 2 1.1972E-08 122.51 By MS/MS By MS/MS 1 1 0.84108 0.78101 19.886 2 Median 0.68764 0.67856 NaN 1 1 Median 1.0288 0.89893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9612900 4901400 4711600 3453200 2038500 1414700 6159800 2862900 3296800 0 0 0 0 0 0 0 0 0 0 0 0 32712 2006 34394 171115;171116 172523;172524;172525 172525 3 TETVEEPMEEEEAAKEEK YSQFINFPIYVWSSKTETVEEPMEEEEAAK VEEPMEEEEAAKEEKEESDDEAAVEEEEEE K T E E K E 2 0 0 0 0 0 9 0 0 0 0 2 1 0 1 0 2 0 0 1 0 0 18 1 2106.9151 P14625;Q96GW1;A0A1W2PRR1 P14625 286 303 HSP90B1 Endoplasmin yes no 2;3 2.4124E-14 118.53 By MS/MS By MS/MS 1 2 0.98114 0.95044 21.706 3 Median 0.68393 0.72057 NaN 1 0 Median 1.0591 1.025 10.687 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18733000 9292600 9440600 4074100 2015700 2058300 14659000 7276800 7382200 0 0 0 0 0 0 0 0 0 0 0 0 32713 2006 34395 171117;171118;171119 172526;172527;172528;172529 172527 4 TETVTSFR HDVGAYMLMYKGANRTETVTSFRKRESKVP MYKGANRTETVTSFRKRESKVPADLLKRAF R T E F R K 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 3 0 0 1 0 0 8 0 939.46616 P78527 P78527 3865 3872 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0022926 138.9 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1.0787 0.99354 9.935 4 Median 0.90203 0.90051 NaN 1 0 Median 1.3057 1.0443 NaN 1 0 Median 0.8999 0.94521 NaN 1 0 Median 1.2899 1.1236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55200000 27062000 28138000 5890200 3015100 2875100 26029000 11917000 14112000 19846000 10566000 9280400 3435300 1564200 1871100 0 0 0 0 0 0 32714 2647 34396 171120;171121;171122;171123;171124 172530;172531;172532;172533;172534;172535 172530 6 TEVIQLEDTLAQVR ELIERDEVSLHKKLRTEVIQLEDTLAQVRK RTEVIQLEDTLAQVRKEYEMLRIEFEQTLA R T E V R K 1 1 0 1 0 2 2 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 14 0 1613.8625 O75150;H3BP71;Q5VTR2 Q5VTR2 436 449 RNF40;RNF20 E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A no no 2 4.8686E-07 117.67 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.45 1.2387 5.3148 3 Median NaN NaN NaN 0 0 Median 1.5469 1.3047 NaN 1 1 Median 1.0666 1.1731 NaN 1 0 Median 1.45 1.2387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12143000 4553900 7589000 0 0 0 5292500 1513900 3778600 6022300 2726200 3296000 828140 313770 514370 0 0 0 0 0 0 32715 3112;1648 34397 171125;171126;171127;171128;171129 172536;172537;172538;172539;172540;172541;172542 172538 7 TEVKDFQPYFK QLGVPLYAVVKEHIRTEVKDFQPYFKGEIF EHIRTEVKDFQPYFKGEIFLDEKKKFYGPQ R T E F K G 0 0 0 1 0 1 1 0 0 0 0 2 0 2 1 0 1 0 1 1 0 0 11 1 1400.6976 Q9BRX8 Q9BRX8 119 129 FAM213A Redox-regulatory protein FAM213A yes yes 3 0.0058375 35.71 By MS/MS 2 1.0107 1.0147 45.195 2 Median 1.0107 1.0147 45.195 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5879800 3172200 2707600 5879800 3172200 2707600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32716 3807 34398 171130;171131 172543 172543 1 TEVLMENFR CPMVGSEVYSTEIKKTEVLMENFRRAIGLR STEIKKTEVLMENFRRAIGLRIKETKEVYE K T E F R R 0 1 1 0 0 0 2 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 9 0 1137.5488 Q9Y265;E7ETR0 Q9Y265 109 117 RUVBL1 RuvB-like 1 yes no 2 0.0054678 71.379 By MS/MS By MS/MS 1 3 1.012 1.0061 10.464 3 Median 1.0362 1.0061 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.94099 0.95032 14.046 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25604000 13148000 12456000 6748300 3263800 3484400 0 0 0 18856000 9884600 8971200 0 0 0 0 0 0 0 0 0 32717 4375 34399;34400 171132;171133;171134;171135 172544;172545;172546;172547 172546 1953 4 TEVLMENFRR CPMVGSEVYSTEIKKTEVLMENFRRAIGLR TEIKKTEVLMENFRRAIGLRIKETKEVYEG K T E R R A 0 2 1 0 0 0 2 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 10 1 1293.65 Q9Y265;E7ETR0 Q9Y265 109 118 RUVBL1 RuvB-like 1 yes no 3 0.064577 16.671 By MS/MS 1 1.383 1.4837 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.383 1.4837 NaN 1 0 Median NaN NaN NaN 0 0 Median 3721200 1669100 2052100 0 0 0 0 0 0 0 0 0 0 0 0 3721200 1669100 2052100 0 0 0 32718 4375 34401 171136 172548 172548 0 TEVLSEDLLQIER RMKQLANQTVGRAEKTEVLSEDLLQIERRL EKTEVLSEDLLQIERRLDTVRSICHHSHKR K T E E R R 0 1 0 1 0 1 3 0 0 1 3 0 0 0 0 1 1 0 0 1 0 0 13 0 1543.8094 Q68EM7;C9IZD3;I3L4P0;I3L1S9 Q68EM7 22 34 ARHGAP17 Rho GTPase-activating protein 17 yes no 2 0.018121 47.261 By MS/MS 1 1.4404 1.5396 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4404 1.5396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1157100 471330 685760 0 0 0 0 0 0 1157100 471330 685760 0 0 0 0 0 0 0 0 0 32719 3127 34402 171137 172549 172549 1 TEVNGFDPLFNAITGLNGSGK IKSIILEGFKSYAQRTEVNGFDPLFNAITG DPLFNAITGLNGSGKSNILDSICFLLGISN R T E G K S 1 0 3 1 0 0 1 4 0 1 2 1 0 2 1 1 2 0 0 1 0 0 21 0 2150.0644 O95347 O95347 18 38 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00061851 33.685 By MS/MS By matching 1 1 0.92816 0.88852 0.79969 2 Median 0.88974 0.89356 NaN 1 0 Median 0.96825 0.88351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1882700 947460 935240 1666100 835770 830350 216570 111690 104880 0 0 0 0 0 0 0 0 0 0 0 0 32720 1766 34403 171138;171139 172550 172550 1 TEVNSGFFYK DAYILTCNVSLEYEKTEVNSGFFYKSAEER LEYEKTEVNSGFFYKSAEEREKLVKAERKF K T E Y K S 0 0 1 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 1 1 0 0 10 0 1190.5608 P40227;J3KRI6;Q92526 P40227 242 251 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 no no 2 0.00038663 79.474 By MS/MS By MS/MS By MS/MS 3 2 1 1.2819 1.0956 17.547 6 Median 1.1896 1.107 27.379 3 1 Median 1.2819 1.079 0.69303 2 0 Median NaN NaN NaN 0 0 Median 1.3069 1.1215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77387000 34770000 42617000 44849000 20615000 24234000 29258000 12838000 16420000 0 0 0 3279800 1317200 1962600 0 0 0 0 0 0 32721 2285;3532 34404 171140;171141;171142;171143;171144;171145 172551;172552;172553;172554;172555;172556;172557 172552 7 TEVNYTQLVDLHAR GFVCIVTNVASQCGKTEVNYTQLVDLHARY KTEVNYTQLVDLHARYAECGLRILAFPCNQ K T E A R Y 1 1 1 1 0 1 1 0 1 0 2 0 0 0 0 0 2 0 1 2 0 0 14 0 1657.8424 K7ERP4;A0A087X2I2;A0A087WT12;P36969;K7EKX7;R4GNE4;K7ENB4;K7EJ20;A0A087X247 K7ERP4 36 49 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 3 0.061198 19.323 By MS/MS 1 1.1312 1.1458 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1312 1.1458 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2130700 1122000 1008700 0 0 0 0 0 0 2130700 1122000 1008700 0 0 0 0 0 0 0 0 0 32722 12 34405 171146 172558 172558 1 TEVPPLLLILDR KQVITKEYELFEFRRTEVPPLLLILDRCDD FRRTEVPPLLLILDRCDDAITPLLNQWTYQ R T E D R C 0 1 0 1 0 0 1 0 0 1 4 0 0 0 2 0 1 0 0 1 0 0 12 0 1377.8232 A0A087WU65;A0A2R8YE10;Q9NRW7;A0A2R8YD95;A0A2R8YF01;A0A1B0GXI6;B7Z7G7 A0A087WU65 84 95 VPS45 Vacuolar protein sorting-associated protein 45 yes no 2 0.012077 36.334 By matching By matching By MS/MS 1 1 2 0.96751 0.9428 5.2208 4 Median 0.94188 0.95581 NaN 1 0 Median 1.0589 0.91351 NaN 1 0 Median 0.94374 0.97801 7.1233 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3241800 1587200 1654600 1200600 601890 598710 1235500 557690 677760 805720 427620 378100 0 0 0 0 0 0 0 0 0 32723 27 34406 171147;171148;171149;171150 172559;172560 172559 2 TEVSLTLTNK SSGNLNDPNKEALAKTEVSLTLTNKFDVPG EALAKTEVSLTLTNKFDVPGDENAEMDART K T E N K F 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 3 0 0 1 0 0 10 0 1104.6027 P46940;H0YLE8 P46940 1359 1368 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0025402 73.985 By MS/MS 1 1.1832 1.048 NaN 1 Median NaN NaN NaN 0 0 Median 1.1832 1.048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16212000 6759100 9452900 0 0 0 16212000 6759100 9452900 0 0 0 0 0 0 0 0 0 0 0 0 32724 2350 34407 171151 172561 172561 1 TEVVDSDGSVKDK ITNGGLANIFTVFAKTEVVDSDGSVKDKIT AKTEVVDSDGSVKDKITAFIVERDFGGVTN K T E D K I 0 0 0 3 0 0 1 1 0 0 0 2 0 0 0 2 1 0 0 3 0 0 13 1 1377.6624 Q9H845 Q9H845 229 241 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes yes 2 0.0075847 51.092 By MS/MS By MS/MS 1 1 1.1952 1.1334 52.532 2 Median 0.81939 0.78174 NaN 1 0 Median 1.7433 1.6432 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2470800 1218100 1252700 1629900 929450 700500 840830 288650 552180 0 0 0 0 0 0 0 0 0 0 0 0 32725 3988 34408 171152;171153 172562;172563 172562 2 TEVVSLLLDR TNRNTALTLACFQGRTEVVSLLLDRKANVE CFQGRTEVVSLLLDRKANVEHRAKTGLTPL R T E D R K 0 1 0 1 0 0 1 0 0 0 3 0 0 0 0 1 1 0 0 2 0 0 10 0 1143.6499 H0YM23;O75179;H0YLQ3 H0YM23 1149 1158 ANKRD17 Ankyrin repeat domain-containing protein 17 yes no 2 0.0013144 66.621 By MS/MS By matching 1 4 1.2093 1.0608 25.304 5 Median 1.4212 1.4186 NaN 1 0 Median 1.1344 1.0032 21.172 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5756800 2802200 2954600 2232200 770000 1462200 3524600 2032200 1492400 0 0 0 0 0 0 0 0 0 0 0 0 32726 1197 34409 171154;171155;171156;171157;171158 172564;172565 172564 2 TEWETAAPAVAETPDIK ______________________________ WETAAPAVAETPDIKLFGKWSTDDVQINDI M T E I K L 4 0 0 1 0 0 3 0 0 1 0 1 0 0 2 0 3 1 0 1 0 0 17 0 1827.8891 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 2 18 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00037123 44.616 By MS/MS By matching By MS/MS 2 1 1 0.78559 0.72564 12.427 4 Median 0.77701 0.72564 1.8785 2 0 Median 0.79106 0.68562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88126 0.90677 NaN 1 0 Median NaN NaN NaN 0 0 Median 34639000 18526000 16113000 30900000 16629000 14272000 161870 84815 77055 0 0 0 0 0 0 3576800 1812600 1764200 0 0 0 32727 1425 34410 171159;171160;171161;171162 172566;172567;172568 172567 3 TEWLDGK GPNTNGSQFFICTAKTEWLDGKHVVFGKVK QFFICTAKTEWLDGKHVVFGKVKEGMNIVE K T E G K H 0 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 7 0 847.40758 P62937;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P0DN37 P62937 119 125 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 1;2 1.3165E-06 158.36 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 4 5 1 1.1417 1.0138 11.899 20 Median 1.1123 1.0456 7.9489 4 0 Median 1.1971 1.0217 6.6648 6 0 Median 1.0703 1.0037 5.8796 4 1 Median 1.2112 0.9697 14.784 5 0 Median NaN NaN NaN 0 0 Median 0.90024 0.71387 NaN 1 0 Median 623980000 287400000 336580000 225470000 105700000 119770000 86249000 38755000 47495000 267770000 123540000 144240000 43489000 18925000 24564000 0 0 0 991280 475960 515320 32728 2611 34411 171163;171164;171165;171166;171167;171168;171169;171170;171171;171172;171173;171174;171175;171176;171177;171178;171179;171180;171181;171182 172569;172570;172571;172572;172573;172574;172575;172576;172577;172578;172579;172580;172581;172582;172583;172584;172585;172586;172587;172588;172589;172590;172591 172573 23 TEWLDGKHVVFGK GPNTNGSQFFICTAKTEWLDGKHVVFGKVK AKTEWLDGKHVVFGKVKEGMNIVEAMERFG K T E G K V 0 0 0 1 0 0 1 2 1 0 1 2 0 1 0 0 1 1 0 2 0 0 13 1 1514.7882 P62937 P62937 119 131 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2;3 1.0725E-05 122.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1 1.1393 1.1307 13.651 11 Median 1.1393 1.1219 5.3345 3 0 Median 1.1179 0.97882 26.044 2 0 Median 1.1063 1.103 3.3994 3 0 Median 1.347 1.2146 7.3054 2 0 Median 1.2252 1.4087 NaN 1 0 Median NaN NaN NaN 0 0 Median 806860000 367160000 439700000 630320000 285990000 344330000 8551300 3581900 4969300 126870000 58849000 68017000 37504000 16964000 20540000 3619200 1771700 1847500 0 0 0 32729 2611 34412 171183;171184;171185;171186;171187;171188;171189;171190;171191;171192;171193 172592;172593;172594;172595;172596;172597;172598;172599;172600;172601;172602;172603;172604;172605;172606;172607;172608;172609;172610;172611;172612 172598 21 TEYDAVAEK KKKQKLLEENVSAFKTEYDAVAEKAGKVEA NVSAFKTEYDAVAEKAGKVEAEVKRLHNTI K T E E K A 2 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 9 0 1024.4713 Q9NTJ3;E9PD53 Q9NTJ3 868 876 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.0049104 59.245 By matching By MS/MS By MS/MS 1 3 1 0.94165 0.81949 35.516 5 Median 1.3446 1.2961 NaN 1 0 Median 0.85012 0.74821 27.517 3 0 Median NaN NaN NaN 0 0 Median 1.0415 0.94512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4955000 2462900 2492100 482760 236640 246120 3817600 1863300 1954300 0 0 0 654640 362950 291700 0 0 0 0 0 0 32730 4108 34413 171194;171195;171196;171197;171198 172613;172614;172615;172616 172614 4 TEYEEAQDAIVK NSKLTSLNEEYTKNKTEYEEAQDAIVKEIV KNKTEYEEAQDAIVKEIVNISSGYVEPMQT K T E V K E 2 0 0 1 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 12 0 1394.6565 P43246;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02 P43246 568 579 MSH2 DNA mismatch repair protein Msh2 yes no 2 4.1172E-06 112.75 By MS/MS By MS/MS 1 1 0.90925 0.8863 20.557 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69896 0.76639 NaN 1 0 Median 1.1828 1.025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13252000 6646800 6605500 0 0 0 0 0 0 7422700 4037500 3385200 5829600 2609300 3220300 0 0 0 0 0 0 32731 2324 34414 171199;171200 172617;172618;172619;172620 172620 4 TEYISTEFNR KRSQQHAKVVPWMRKTEYISTEFNRYGISN PWMRKTEYISTEFNRYGISNEKPEVKIGVS K T E N R Y 0 1 1 0 0 0 2 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 10 0 1258.583 Q8N7H5;B4DGJ5 Q8N7H5 134 143 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.00070717 97.431 By MS/MS By MS/MS 1 1 0.86872 0.80339 9.3744 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73523 0.75186 NaN 1 0 Median 1.0264 0.85845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8849200 5056500 3792700 0 0 0 0 0 0 7809800 4561600 3248200 1039400 494900 544490 0 0 0 0 0 0 32732 3393 34415 171201;171202 172621;172622 172621 2 TEYLSNADER HLQQANIQFRTDIARTEYLSNADERLRWQA TDIARTEYLSNADERLRWQASSLPADDLCT R T E E R L 1 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1196.5309 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3550 3559 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 2.8949E-22 198.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 3 2 1.2891 1.0785 19.646 14 Median 1.1298 1.1304 24.337 2 0 Median 1.4161 1.182 21.883 3 0 Median 0.97782 1.0081 10.925 2 1 Median 1.3405 1.1723 19.568 2 0 Median 1.2319 1.0681 33.468 3 0 Plateau 1.3652 1.1093 11.124 2 0 Median 51581000 23125000 28456000 6797600 3111800 3685800 19913000 8656100 11257000 12286000 5923800 6362500 6100200 2587900 3512300 3486000 1674800 1811200 2997400 1170500 1826900 32733 2865 34416 171203;171204;171205;171206;171207;171208;171209;171210;171211;171212;171213;171214;171215;171216 172623;172624;172625;172626;172627;172628;172629;172630;172631;172632;172633 172628 11 TEYLSNADERLR HLQQANIQFRTDIARTEYLSNADERLRWQA IARTEYLSNADERLRWQASSLPADDLCTEN R T E L R W 1 2 1 1 0 0 2 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 12 1 1465.7161 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3550 3561 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.00019906 66.267 By matching By MS/MS 1 1 1.0346 1.1306 5.9718 2 Median 1.0853 1.1794 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98623 1.0839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12608000 5470600 7137700 6073700 2461000 3612700 0 0 0 6534500 3009600 3524900 0 0 0 0 0 0 0 0 0 32734 2865 34417 171217;171218 172634 172634 1 TFAAQSLVQLLSK LQHICAKVVDKSEYRTFAAQSLVQLLSKLP YRTFAAQSLVQLLSKLPCGEYAMFIAWLYK R T F S K L 2 0 0 0 0 2 0 0 0 0 3 1 0 1 0 2 1 0 0 1 0 0 13 0 1404.7977 P42695;E9PKK4;G3V1A9 P42695 372 384 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.046235 41.283 By MS/MS 1 1.2144 1.0767 NaN 1 Median NaN NaN NaN 0 0 Median 1.2144 1.0767 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5712400 2581100 3131300 0 0 0 5712400 2581100 3131300 0 0 0 0 0 0 0 0 0 0 0 0 32735 2313 34418 171219 172635 172635 1 TFAEVTDLDNEVNNMLK AVQKNATSTKAEAERTFAEVTDLDNEVNNM AEVTDLDNEVNNMLKQLQEAEKELKRKQDD R T F L K Q 1 0 3 2 0 0 2 0 0 0 2 1 1 1 0 0 2 0 0 2 0 0 17 0 1951.9197 P11047 P11047 1450 1466 LAMC1 Laminin subunit gamma-1 yes yes 2 5.7917E-07 87.363 By MS/MS 2 1.4344 1.2419 6.1196 2 Median NaN NaN NaN 0 0 Median 1.4344 1.2419 6.1196 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6697400 2590500 4106900 0 0 0 6697400 2590500 4106900 0 0 0 0 0 0 0 0 0 0 0 0 32736 1949 34419 171220;171221 172636 172636 1 TFANSSYLAQHIR SHTETKPHKCPHCSKTFANSSYLAQHIRIH SKTFANSSYLAQHIRIHSGAKPYSCNFCEK K T F I R I 2 1 1 0 0 1 0 0 1 1 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1506.7579 Q8TF68;F5H8L7;E9PHB3 Q8TF68 264 276 ZNF384 Zinc finger protein 384 yes no 2;3 0.0001991 78.655 By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 0.76515 0.74016 17.182 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74051 0.7478 37.189 2 0 Median 0.90207 0.76519 11.659 2 0 Median 0.7373 0.74114 7.2611 3 0 Median 0.71403 0.61132 NaN 1 0 Median 41638000 23579000 18059000 0 0 0 0 0 0 21596000 12768000 8828300 3044500 1469700 1574700 15861000 8743400 7118000 1136000 598200 537810 32737 3483 34420 171222;171223;171224;171225;171226;171227;171228;171229;171230 172637;172638;172639;172640;172641;172642;172643;172644;172645 172637 8 TFAPEEISAMVLTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM KTFAPEEISAMVLTKMKETAEAYLGKKVTH K T F T K M 2 0 0 0 0 0 2 0 0 1 1 1 1 1 1 1 2 0 0 1 0 0 14 0 1535.7905 P11021 P11021 139 152 HSPA5 78 kDa glucose-regulated protein yes yes 2 2.8117E-08 134.13 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 2 1.0388 1.0133 12.339 9 Median 1.0172 0.97506 7.1904 3 0 Median 1.0623 0.90693 6.3899 2 1 Median 1.0577 1.0626 NaN 1 0 Median 1.2906 1.1096 NaN 1 0 Median 1.1061 1.1585 16.09 2 1 Median NaN NaN NaN 0 0 Median 118840000 56849000 61990000 64602000 32038000 32564000 32896000 15177000 17719000 16501000 7539900 8961300 820250 355910 464340 4018700 1737400 2281300 0 0 0 32738 1948 34421 171231;171232;171233;171234;171235;171236;171237;171238;171239;171240 172646;172647;172648;172649;172650;172651;172652;172653;172654;172655;172656;172657 172656 12 TFAQDGQHQVLSMNR HFHIMEAMLYALLNKTFAQDGQHQVLSMNR TFAQDGQHQVLSMNRNAVGKHFELMIGDSR K T F N R N 1 1 1 1 0 3 0 1 1 0 1 0 1 1 0 1 1 0 0 1 0 0 15 0 1730.8159 Q96QE5 Q96QE5 264 278 TEFM Transcription elongation factor, mitochondrial yes yes 3 0.0031672 28.956 By MS/MS By matching 1 1 1.1171 0.9885 9.6695 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94325 0.92317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.323 1.0584 NaN 1 0 Median 9194000 5362500 3831500 0 0 0 0 0 0 8842500 5203200 3639300 0 0 0 0 0 0 351490 159290 192200 32739 3721 34422 171241;171242 172658 172658 1 TFAQGLAVAGDVVSK RKLKLQVTRAFVAARTFAQGLAVAGDVVSK TFAQGLAVAGDVVSKVSVVNPTAQCTHALL R T F S K V 3 0 0 1 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 3 0 0 15 0 1461.7827 O75487 O75487 220 234 GPC4 Glypican-4;Secreted glypican-4 yes yes 2 4.8594E-05 70.488 By MS/MS By matching By MS/MS 1 1 2 0.79295 0.78245 27.02 4 Median 0.53364 0.51492 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.71195 0.68129 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89787 0.90501 0.99846 2 0 Median NaN NaN NaN 0 0 Median 20566000 11396000 9169900 4114800 2741800 1372900 0 0 0 2573500 1452500 1121100 0 0 0 13878000 7202100 6675900 0 0 0 32740 1677 34423 171243;171244;171245;171246 172659;172660;172661;172662 172659 4 TFAVDETSVSGYIYHK VWKSTSFDRMQSALKTFAVDETSVSGYIYH FAVDETSVSGYIYHKLLGHEVEDVIIKCQL K T F H K L 1 0 0 1 0 0 1 1 1 1 0 1 0 1 0 2 2 0 2 2 0 0 16 0 1815.8679 Q92900 Q92900 440 455 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.0058438 37.092 By MS/MS By MS/MS 1 1 1.2575 1.2908 1.6655 2 Median 1.3114 1.2757 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2059 1.3061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9712700 4580800 5131900 6336300 2885900 3450400 0 0 0 3376400 1694800 1681600 0 0 0 0 0 0 0 0 0 32741 3564 34424 171247;171248 172663;172664 172663 2 TFAYTNHTVLPEALER IEKLPWSKAWELTQKTFAYTNHTVLPEALE FAYTNHTVLPEALERWPVDLVEKLLPRHLE K T F E R W 2 1 1 0 0 0 2 0 1 0 2 0 0 1 1 0 3 0 1 1 0 0 16 0 1860.937 P06737;E9PK47 P06737 372 387 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 3.6011E-05 57.019 By MS/MS By matching By matching 2 1 1 0.98315 0.89679 19.475 4 Median 0.88881 0.85637 8.0608 2 0 Median 1.0266 0.8871 NaN 1 0 Median 1.1777 1.2629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35799000 18197000 17602000 24796000 13082000 11715000 7366200 3654400 3711700 3636800 1461200 2175600 0 0 0 0 0 0 0 0 0 32742 1874 34425 171249;171250;171251;171252 172665;172666;172667;172668;172669;172670 172666 6 TFCQLILDPIFK FSKSATSPEGKKLPRTFCQLILDPIFKVFD LPRTFCQLILDPIFKVFDAIMNFKKEETAK R T F F K V 0 0 0 1 1 1 0 0 0 2 2 1 0 2 1 0 1 0 0 0 0 0 12 0 1493.7952 P13639 P13639 288 299 EEF2 Elongation factor 2 yes yes 2 0.00058433 74.162 By matching By MS/MS By matching 1 3 1 0.86291 0.7595 15.072 5 Median 1.0375 1.0022 NaN 1 0 Median 0.85406 0.74761 2.1719 3 0 Median 0.91601 0.95333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33931000 17956000 15976000 439950 223300 216650 32807000 17373000 15435000 684280 359630 324650 0 0 0 0 0 0 0 0 0 32743 1992 34426 171253;171254;171255;171256;171257 172671;172672;172673;172674 172672 4 TFDAQIVIIEHK GFILCDPNNLCHSGRTFDAQIVIIEHKSII SGRTFDAQIVIIEHKSIICPGYNAVLHIHT R T F H K S 1 0 0 1 0 1 1 0 1 3 0 1 0 1 0 0 1 0 0 1 0 0 12 0 1412.7664 P15170 P15170 392 403 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes yes 3 0.00153 40.475 By matching By MS/MS By matching 1 1 2 1.1051 1.2008 13.298 4 Linear 1.1045 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1057 1.1744 NaN 1 0 Median 1.0938 0.9563 15.373 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6906200 3108200 3798000 2037500 887680 1149800 0 0 0 4497100 2031900 2465200 371680 188700 182980 0 0 0 0 0 0 32744 2016 34427 171258;171259;171260;171261 172675 172675 1 TFDEIASGFR FFIFTYFKVPETKGRTFDEIASGFRQGGAS ETKGRTFDEIASGFRQGGASQSDKTPEELF R T F F R Q 1 1 0 1 0 0 1 1 0 1 0 0 0 2 0 1 1 0 0 0 0 0 10 0 1141.5404 P11166 P11166 459 468 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 yes yes 2 2.0661E-05 146.81 By MS/MS By MS/MS By MS/MS 3 3 1 1.3067 1.3065 38.181 7 Median 1.6346 1.59 12.051 3 1 Median 0.8993 0.76091 4.8464 3 0 Median 1.5227 1.6082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55963000 24435000 31529000 27329000 10710000 16619000 18893000 9744900 9148100 9741400 3979900 5761400 0 0 0 0 0 0 0 0 0 32745 1951 34428 171262;171263;171264;171265;171266;171267;171268 172676;172677;172678;172679;172680;172681;172682 172676 7 TFDETVSTYVPLAQQVEDFHK CTIVKPFNLSQGKKRTFDETVSTYVPLAQQ STYVPLAQQVEDFHKRTPNRYHLRSKKDDI R T F H K R 1 0 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 21 0 2453.1751 Q9ULW0 Q9ULW0 316 336 TPX2 Targeting protein for Xklp2 yes yes 3 0.036148 11.788 By MS/MS By matching 1 1 0.81015 0.84739 25.193 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66564 0.70912 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98604 1.0126 NaN 1 0 Median NaN NaN NaN 0 0 Median 2804700 1443400 1361300 0 0 0 0 0 0 2085000 1139600 945450 0 0 0 719670 303820 415840 0 0 0 32746 4330 34429 171269;171270 172683 172683 1 TFDETVSTYVPLAQQVEDFHKR CTIVKPFNLSQGKKRTFDETVSTYVPLAQQ TYVPLAQQVEDFHKRTPNRYHLRSKKDDIN R T F K R T 1 1 0 2 0 2 2 0 1 0 1 1 0 2 1 1 3 0 1 3 0 0 22 1 2609.2762 Q9ULW0 Q9ULW0 316 337 TPX2 Targeting protein for Xklp2 yes yes 3 3.7107E-05 36.805 By MS/MS 1 0.87776 0.99612 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87776 0.99612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6011300 2652900 3358500 0 0 0 0 0 0 6011300 2652900 3358500 0 0 0 0 0 0 0 0 0 32747 4330 34430 171271 172684;172685 172684 2 TFDHYCEYR GLNFSSATTPELLLKTFDHYCEYRRTPNGV PELLLKTFDHYCEYRRTPNGVVLAPVQLGK K T F Y R R 0 1 0 1 1 0 1 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 9 0 1289.5135 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2634 2642 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.00010787 101.65 By MS/MS By MS/MS By MS/MS 2 1 1 1.5215 1.4349 17.992 4 Median NaN NaN NaN 0 0 Median 1.5215 1.2651 6.6787 2 2 Median 1.3769 1.5524 NaN 1 1 Median 2.0881 1.8169 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15462000 6248000 9214400 0 0 0 13287000 5419700 7867600 1175600 535310 640280 999530 293040 706490 0 0 0 0 0 0 32748 2865 34431 171272;171273;171274;171275 172686;172687;172688;172689 172687 4 TFDHYCEYRR GLNFSSATTPELLLKTFDHYCEYRRTPNGV ELLLKTFDHYCEYRRTPNGVVLAPVQLGKW K T F R R T 0 2 0 1 1 0 1 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 10 1 1445.6146 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2634 2643 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 0.0017371 48.004 By MS/MS By MS/MS 1 1 1.1275 1.1443 3.0544 2 Median NaN NaN NaN 0 0 Median 1.1948 1.1198 NaN 1 0 Median 1.0639 1.1692 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8997900 4178000 4820000 0 0 0 6559900 2920300 3639600 2438100 1257700 1180400 0 0 0 0 0 0 0 0 0 32749 2865 34432 171276;171277 172690;172691;172692;172693 172692 4 TFDPYIIIR LDLIEGSMTVCTTKKTFDPYIIIRARDLIK VCTTKKTFDPYIIIRARDLIKLLARSVSFE K T F I R A 0 1 0 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1136.623 Q13601 Q13601 107 115 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.0034481 65.038 By MS/MS By matching By MS/MS 1 1 1 1.1332 1.005 12.66 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89143 0.87601 NaN 1 0 Median 1.1541 1.005 NaN 1 0 Median 1.1332 1.1281 NaN 1 0 Median NaN NaN NaN 0 0 Median 37234000 19179000 18055000 0 0 0 0 0 0 15510000 8281500 7228800 1635900 839650 796280 20088000 10058000 10030000 0 0 0 32750 2830 34433 171278;171279;171280 172694;172695;172696;172697 172697 4 TFDQLTPDESK FQYDHEAFLGKEDSKTFDQLTPDESKERLG EDSKTFDQLTPDESKERLGKIVDRIDNDGD K T F S K E 0 0 0 2 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 0 0 0 11 0 1279.5932 Q15293 Q15293 71 81 RCN1 Reticulocalbin-1 yes yes 2 0.00042157 70.028 By MS/MS 1 1.0744 0.9156 NaN 1 Median NaN NaN NaN 0 0 Median 1.0744 0.9156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12901000 6140200 6761100 0 0 0 12901000 6140200 6761100 0 0 0 0 0 0 0 0 0 0 0 0 32751 2940 34434 171281 172698;172699 172698 2 TFDQLTPDESKER FQYDHEAFLGKEDSKTFDQLTPDESKERLG SKTFDQLTPDESKERLGKIVDRIDNDGDGF K T F E R L 0 1 0 2 0 1 2 0 0 0 1 1 0 1 1 1 2 0 0 0 0 0 13 1 1564.7369 Q15293 Q15293 71 83 RCN1 Reticulocalbin-1 yes yes 2;3 3.9278E-06 125.74 By MS/MS By MS/MS By MS/MS 2 2 1 1.0525 1.0817 19.751 5 Median 0.94638 1.0142 9.1114 2 0 Median 1.1072 1.0436 6.797 2 1 Median NaN NaN NaN 0 0 Median 1.7993 1.5685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71587000 35519000 36068000 47523000 24051000 23472000 20399000 10051000 10349000 0 0 0 3664600 1417600 2247000 0 0 0 0 0 0 32752 2940 34435 171282;171283;171284;171285;171286 172700;172701;172702;172703;172704;172705;172706;172707;172708;172709 172704 10 TFDQLTPEESKER FDYDHDAFLGAEEAKTFDQLTPEESKERLG AKTFDQLTPEESKERLGKIVSKIDGDKDGF K T F E R L 0 1 0 1 0 1 3 0 0 0 1 1 0 1 1 1 2 0 0 0 0 0 13 1 1578.7526 O43852 O43852 60 72 CALU Calumenin yes yes 2;3 0.00053924 92.866 By MS/MS By MS/MS By MS/MS 4 3 1 0.77234 0.73384 70.932 8 Median 0.64646 0.68662 34.575 4 1 Median 0.76023 0.7148 114.38 3 2 Median NaN NaN NaN 0 0 Median 0.85986 0.75339 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75319000 45681000 29638000 56797000 32817000 23980000 16918000 11956000 4962400 0 0 0 1603500 908240 695220 0 0 0 0 0 0 32753 1598 34436 171287;171288;171289;171290;171291;171292;171293;171294 172710;172711;172712;172713;172714;172715;172716 172710 7 TFDSIVMDPK VPKNNKGPVKVVVGKTFDSIVMDPKKDVLI VVVGKTFDSIVMDPKKDVLIEFYAPWCGHC K T F P K K 0 0 0 2 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 0 10 0 1151.5533 P13667;A0A499FI48 P13667 534 543 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.0010897 68.625 By MS/MS By matching By MS/MS 1 1 1 0.97223 0.85072 20.777 3 Median 0.85908 0.7679 NaN 1 0 Median 0.97223 0.85072 NaN 1 0 Median 1.1104 1.1456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32211000 16691000 15520000 20561000 10769000 9791600 4186000 2081600 2104500 7463900 3839500 3624400 0 0 0 0 0 0 0 0 0 32754 1993 34437 171295;171296;171297 172717;172718;172719 172719 3 TFDWAEFRPIQQALAQER KRSRARERRREGRSKTFDWAEFRPIQQALA WAEFRPIQQALAQERVGGVGPADTHEPLRP K T F E R V 3 2 0 1 0 3 2 0 0 1 1 0 0 2 1 0 1 1 0 0 0 0 18 1 2205.0967 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9 A0A494BZV2 660 677 MPRIP Myosin phosphatase Rho-interacting protein yes no 3 0.064922 9.3701 By matching By MS/MS 2 2 0.98827 1.0967 21.164 4 Median 1.1357 1.1999 10.573 2 0 Median NaN NaN NaN 0 0 Median 0.79163 0.91911 22.834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6743600 3282500 3461100 1952400 879270 1073100 0 0 0 4791200 2403300 2388000 0 0 0 0 0 0 0 0 0 32755 453 34438 171298;171299;171300;171301 172720 172720 1 TFDWTQFR RTVSSFGVVYDQEKKTFDWTQFRIISRLDK VYDQEKKTFDWTQFRIISRLDKKSDESLEQ K T F F R I 0 1 0 1 0 1 0 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 8 0 1099.5087 Q8TD26 Q8TD26 1475 1482 CHD6 Chromodomain-helicase-DNA-binding protein 6 yes yes 2 0.020415 46.426 By MS/MS 1 0.85957 0.96922 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85957 0.96922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1251200 744260 506930 0 0 0 0 0 0 1251200 744260 506930 0 0 0 0 0 0 0 0 0 32756 3469 34439 171302 172721 172721 1 TFDYKIPYTTVLR YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K T F L R L 0 1 0 1 0 0 0 0 0 1 1 1 0 1 1 0 3 0 2 1 0 0 13 1 1615.861 Q08945;E9PMD4 Q08945 229 241 SSRP1 FACT complex subunit SSRP1 yes no 3 0.0013297 41.644 By matching By MS/MS By matching 1 4 1 1.2027 1.2964 30.404 6 Median 0.75496 0.767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2027 1.2964 21.531 4 0 Median 1.8378 1.6994 NaN 1 0 Median 11212000 5161600 6050700 701870 378470 323410 0 0 0 0 0 0 0 0 0 10355000 4710400 5644200 155790 72738 83051 32757 2743 34440 171303;171304;171305;171306;171307;171308 172722;172723;172724 172723 3 TFEDFVR FTPPCQRMGGMVSFRTFEDFVRIFDEVMGC MGGMVSFRTFEDFVRIFDEVMGCFSDSPPQ R T F V R I 0 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 7 0 912.43413 Q13085 Q13085 1241 1247 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 0.043995 43.124 By MS/MS By matching 1 2 1.1564 0.97883 16.044 3 Median 0.89905 0.90312 NaN 1 0 Median 1.2918 1.0974 16.175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3307500 1486300 1821300 1289000 694100 594900 2018500 792150 1226400 0 0 0 0 0 0 0 0 0 0 0 0 32758 2784 34441 171309;171310;171311 172725 172725 1 TFEDISEK IENELLARNIHVIRRTFEDISEKGSLDQDR NIHVIRRTFEDISEKGSLDQDRRLFVDGQE R T F E K G 0 0 0 1 0 0 2 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 967.44984 A0A2R8Y430;P48637;A0A2R8Y5T7;A0A2R8Y7I7;A0A2R8Y6Q7 A0A2R8Y430 238 245 GSS Glutathione synthetase yes no 2 0.0096345 60.436 By matching By MS/MS 1 1 1.5577 1.4006 1.9362 2 Median 1.4581 1.3816 NaN 1 0 Median 1.6641 1.4199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7676800 2830700 4846100 4265100 1561900 2703300 3411700 1268800 2142900 0 0 0 0 0 0 0 0 0 0 0 0 32759 358 34442 171312;171313 172726 172726 1 TFEDITR FLAFTFFKVPETRGRTFEDITRAFEGQAHG KVPETRGRTFEDITRAFEGQAHGADRSGKD R T F T R A 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 7 0 880.42905 P11169;Q8TDB8 P11169 457 463 SLC2A3;SLC2A14 Solute carrier family 2, facilitated glucose transporter member 3;Solute carrier family 2, facilitated glucose transporter member 14 yes no 2 0.012003 79.116 By matching By MS/MS By matching 1 2 1 1.2042 1.1134 45.713 4 Median 1.885 1.8969 NaN 1 0 Median 0.94735 0.78211 6.7109 2 0 Median 1.412 1.5114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63291000 32714000 30577000 4011400 1501900 2509500 56762000 30287000 26475000 2517500 924540 1593000 0 0 0 0 0 0 0 0 0 32760 1952 34443 171314;171315;171316;171317 172727 172727 1 TFEECQQNLMK AVRFKTKEVADCFKKTFEECQQNLMKLQKG CFKKTFEECQQNLMKLQKGHVSLAAELSKE K T F M K L 0 0 1 0 1 2 2 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 11 0 1426.6221 P49792 P49792 3036 3046 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0024956 76.827 By MS/MS 1 0.99681 1.0744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99681 1.0744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4433800 2106600 2327200 0 0 0 0 0 0 4433800 2106600 2327200 0 0 0 0 0 0 0 0 0 32761 2401 34444 171318 172728 172728 1 TFEEKDIELHLESSSHQETLDHIQK DGYRMAFTCSFCKFRTFEEKDIELHLESSS LESSSHQETLDHIQKQTKFDKVVMEFLHEC R T F Q K Q 0 0 0 2 0 2 5 0 3 2 3 2 0 1 0 3 2 0 0 0 0 0 25 1 2992.4414 Q5BKZ1;A0A0A0MRN4 Q5BKZ1 321 345 ZNF326 DBIRD complex subunit ZNF326 yes no 5 0.013465 16.337 By MS/MS 2 1.0424 1.1388 7.1193 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0424 1.1388 7.1193 2 0 Median NaN NaN NaN 0 0 Median 19972000 9422100 10550000 0 0 0 0 0 0 0 0 0 0 0 0 19972000 9422100 10550000 0 0 0 32762 3042 34445 171319;171320 172729 172729 1 TFEEKQGTEIDGR GIAYIEFKTEADAEKTFEEKQGTEIDGRSI EKTFEEKQGTEIDGRSISLYYTGEKGQNQD K T F G R S 0 1 0 1 0 1 3 2 0 1 0 1 0 1 0 0 2 0 0 0 0 0 13 1 1508.7107 P19338;H7BY16 P19338 445 457 NCL Nucleolin yes no 3 0.00027204 63.76 By MS/MS By MS/MS 2 2 0.96539 0.92303 29.425 4 Median 0.71059 0.7301 35.987 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1308 1.0107 15.653 2 1 Median 6915200 3572900 3342200 4228200 2189500 2038700 0 0 0 0 0 0 0 0 0 0 0 0 2687000 1383500 1303500 32763 2063 34446 171321;171322;171323;171324 172730;172731;172732;172733 172730 4 TFEGIDPK KFLVYVANFDEKDPRTFEGIDPKKTTMRDV FDEKDPRTFEGIDPKKTTMRDVYKKFDLGQ R T F P K K 0 0 0 1 0 0 1 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 905.44945 P50395;Q5SX87;Q5SX86 P50395 157 164 GDI2 Rab GDP dissociation inhibitor beta yes no 2 0.025155 42.869 By MS/MS By MS/MS 1 1 1.0407 0.92574 5.8351 2 Median 1.0338 0.96474 NaN 1 0 Median 1.0477 0.88832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18814000 9244300 9569800 8761500 4295300 4466200 10053000 4949000 5103500 0 0 0 0 0 0 0 0 0 0 0 0 32764 2411 34447 171325;171326 172734;172735;172736;172737 172734 4 TFEGVDPQTTSMR KFLVFVANFDENDPKTFEGVDPQTTSMRDV PKTFEGVDPQTTSMRDVYRKFDLGQDVIDF K T F M R D 0 1 0 1 0 1 1 1 0 0 0 0 1 1 1 1 3 0 0 1 0 0 13 0 1467.6664 P31150 P31150 157 169 GDI1 Rab GDP dissociation inhibitor alpha yes yes 2 7.5293E-05 151.15 By MS/MS By MS/MS By matching 1 1 1 0.94562 0.89503 18.34 3 Median 0.94562 0.89503 NaN 1 0 Median 1.0618 0.90806 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7545 0.65634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25607000 12092000 13515000 19892000 9080500 10811000 3050500 1429300 1621200 0 0 0 2664500 1582000 1082400 0 0 0 0 0 0 32765 2201 34448 171327;171328;171329 172738;172739;172740;172741 172739 4 TFEHVTSEIGAEEAEEVGVEHLLR ISVEEVHDDGTPTSKTFEHVTSEIGAEEAE GAEEAEEVGVEHLLRDIKDTTVGTLSQRIT K T F L R D 2 1 0 0 0 0 7 2 2 1 2 0 0 1 0 1 2 0 0 3 0 0 24 0 2680.298 P51665;H3BNT7;H3BTM8 P51665 154 177 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 3;4 3.4382E-16 64.295 By matching By MS/MS 1 2 1.0738 0.93595 12.586 3 Median 1.1303 1.1579 NaN 1 0 Median 1.0686 0.93127 0.70883 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25514000 11029000 14485000 710680 281140 429540 24803000 10748000 14055000 0 0 0 0 0 0 0 0 0 0 0 0 32766 2440 34449 171330;171331;171332 172742;172743;172744;172745;172746 172746 5 TFEINPR TGKDISTNYYASQKKTFEINPRHPLIRDML NYYASQKKTFEINPRHPLIRDMLRRIKEDE K T F P R H 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 7 0 875.45012 P14625;Q58FF3;H0YIV0 P14625 684 690 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.001798 111.28 By MS/MS By MS/MS By matching 3 3 2 1.2209 1.1074 82.425 8 Median 1.218 1.1524 29.14 3 2 Median 1.2239 1.0623 11.887 3 0 Median 4.2287 3.7339 151.09 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102810000 43751000 59056000 57870000 24650000 33220000 38222000 16419000 21803000 6714800 2681600 4033200 0 0 0 0 0 0 0 0 0 32767 2006 34450 171333;171334;171335;171336;171337;171338;171339;171340 172747;172748;172749;172750;172751;172752;172753;172754 172748 8 TFEISASDK KDGKKCLFLVKCFDKTFEISASDKKKKQEW VKCFDKTFEISASDKKKKQEWIQAIHSTIH K T F D K K 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 0 0 0 9 0 996.47639 Q9UH65;E7EMB1;E9PJM7 Q9UH65 283 291 SWAP70 Switch-associated protein 70 yes no 2 0.0032184 66.621 By MS/MS 1 1.4294 1.2157 NaN 1 Median NaN NaN NaN 0 0 Median 1.4294 1.2157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4635900 1780200 2855700 0 0 0 4635900 1780200 2855700 0 0 0 0 0 0 0 0 0 0 0 0 32768 4270 34451 171341 172755 172755 1 TFEISEPVITPSQR GIIALSYRDWEEIVKTFEISEPVITPSQRQ KTFEISEPVITPSQRQQKPSA_________ K T F Q R Q 0 1 0 0 0 1 2 0 0 2 0 0 0 1 2 2 2 0 0 1 0 0 14 0 1602.8253 Q9NXX6 Q9NXX6 366 379 NSMCE4A Non-structural maintenance of chromosomes element 4 homolog A yes yes 2 0.0014971 62.303 By MS/MS 1 0.7612 0.7677 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7612 0.7677 NaN 1 1 Median NaN NaN NaN 0 0 Median 2733200 1594500 1138700 0 0 0 0 0 0 0 0 0 0 0 0 2733200 1594500 1138700 0 0 0 32769 4170 34452 171342 172756 172756 1 TFEMSDFIVDTR ARRAKVYGRGLSEGRTFEMSDFIVDTRDAG EGRTFEMSDFIVDTRDAGYGGISLAVEGPS R T F T R D 0 1 0 2 0 0 1 0 0 1 0 0 1 2 0 1 2 0 0 1 0 0 12 0 1459.6653 O75369;E7EN95 O75369 2017 2028 FLNB Filamin-B yes no 2 5.4737E-06 117.67 By MS/MS By MS/MS By MS/MS By matching By matching 3 3 1 1 1 1.122 0.95459 15.822 9 Median 1.1769 1.1398 19.039 3 0 Plateau 1.1552 0.97528 1.7534 3 2 Plateau 0.85196 0.9459 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3291 1.3564 NaN 1 0 Median 0.97261 0.85186 NaN 1 0 Median 35110000 15654000 19456000 20705000 9056900 11648000 11250000 5157300 6092500 2125200 1032300 1092800 0 0 0 545300 175850 369450 484890 231670 253220 32770 1664 34453 171343;171344;171345;171346;171347;171348;171349;171350;171351 172757;172758;172759;172760;172761;172762;172763;172764;172765 172760 9 TFEQRVEDVR ______________________________ FKQRRTFEQRVEDVRLIREQHPTKIPVIIE R T F V R L 0 2 0 1 0 1 2 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 10 1 1277.6364 H3BTL1;Q9GZQ8;A6NCE7;H3BTE7 H3BTL1 12 21 MAP1LC3B;MAP1LC3B2 Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3 beta 2 yes no 3 0.0058238 37.73 By matching By MS/MS 1 1 1.1649 1.2429 8.5836 2 Median 1.26 1.3207 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0771 1.1697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6030300 2775100 3255300 1588500 634870 953660 0 0 0 4441800 2140200 2301600 0 0 0 0 0 0 0 0 0 32771 505 34454 171352;171353 172766 172766 1 TFESLVDFSK MKLVEVIKTPMTSQKTFESLVDFSKALGKH MTSQKTFESLVDFSKALGKHPVSCKDTPGF K T F S K A 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 2 1 0 0 1 0 0 10 0 1171.5761 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQ78;A0A1W2PQV5;A0A1W2PQC2;A0A1W2PRT2 A0A0D9SFP2 197 206 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.0014621 65.305 By MS/MS By MS/MS By MS/MS 1 1 1 1.2157 1.1668 22.704 3 Median 1.1189 1.0139 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2157 1.1668 NaN 1 0 Median 1.8727 1.5809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57037000 27341000 29696000 48932000 23507000 25425000 0 0 0 6071900 3142400 2929500 2033100 691190 1341900 0 0 0 0 0 0 32772 269 34455 171354;171355;171356 172767;172768;172769;172770;172771 172770 5 TFESSQIESVKR ISDSVERDRDRDRDRTFESSQIESVKRCEA RDRTFESSQIESVKRCEAKLEGEHERDLES R T F K R C 0 1 0 0 0 1 2 0 0 1 0 1 0 1 0 3 1 0 0 1 0 0 12 1 1409.7151 Q5T200 Q5T200 1378 1389 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 3 3.9014E-05 87.001 By MS/MS 1 0.88398 1.0599 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88398 1.0599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7444900 4198600 3246200 0 0 0 0 0 0 7444900 4198600 3246200 0 0 0 0 0 0 0 0 0 32773 3082 34456 171357 172772 172772 1 TFEVCDLPVR GSVCVWNHETQTLVKTFEVCDLPVRAAKFV QTLVKTFEVCDLPVRAAKFVARKNWVVTGA K T F V R A 0 1 0 1 1 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 10 0 1234.6016 P35606;D6R997;D6RBZ7;D6RCL6;D6RBG7;D6RBT6 P35606 52 61 COPB2 Coatomer subunit beta yes no 2 0.0022391 60.973 By MS/MS 1 0.70584 0.59274 NaN 1 Median NaN NaN NaN 0 0 Median 0.70584 0.59274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1812000 1012900 799150 0 0 0 1812000 1012900 799150 0 0 0 0 0 0 0 0 0 0 0 0 32774 2246 34457 171358 172773 172773 1 TFEVPEENTAETITR LGAPNCLSMGSRCLKTFEVPEENTAETITR TFEVPEENTAETITRVLYEVFIEWGISAKV K T F T R V 1 1 1 0 0 0 4 0 0 1 0 0 0 1 1 0 4 0 0 1 0 0 15 0 1735.8265 C9JXP4;O96006 C9JXP4 235 249 ZBED1 Zinc finger BED domain-containing protein 1 yes no 2 0.005552 51.092 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32775 727 34458 171359 172774 172774 1 TFEVTPIR DSKEEKYVAKELAVRTFEVTPIRAKDLEFG AKELAVRTFEVTPIRAKDLEFGGVPGVFLI R T F I R A 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 0 1 0 0 8 0 961.52328 Q14739;A0A494C1L1;C9JXK0 Q14739 196 203 LBR Lamin-B receptor yes no 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 3 1 1 1 0.95895 0.92986 12.727 9 Median 0.95895 0.92986 NaN 1 1 Median 1.2039 0.9908 11.758 2 1 Median 0.8188 0.8443 13.193 3 0 Median 1.3768 1.1942 NaN 1 0 Median 0.80421 0.8447 NaN 1 0 Median 1.1869 0.96213 NaN 1 0 Median 148460000 81102000 67359000 32351000 19085000 13266000 57585000 30711000 26874000 54393000 29211000 25182000 331330 120210 211110 2889000 1645500 1243500 911730 329200 582530 32776 2897 34459 171360;171361;171362;171363;171364;171365;171366;171367;171368 172775;172776;172777;172778;172779;172780;172781 172780 7 TFFEELAVEDK DKVVKKGKKDKKIKKTFFEELAVEDKQAGE KIKKTFFEELAVEDKQAGEEEKVLKEKEQQ K T F D K Q 1 0 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1326.6343 Q8NE71;Q5STZ8;A0A0G2JIC2 Q8NE71 40 50 ABCF1 ATP-binding cassette sub-family F member 1 yes no 2 0.0018537 56.729 By matching By MS/MS By MS/MS 1 1 2 1.2023 1.1212 10.868 4 Median NaN NaN NaN 0 0 Median 1.2616 1.1417 NaN 1 0 Median 1.1426 1.2575 NaN 1 0 Median 1.2023 1.0318 9.1763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5583900 2394600 3189300 0 0 0 405340 178870 226470 3811600 1601900 2209800 1367000 613900 753060 0 0 0 0 0 0 32777 3427 34460 171369;171370;171371;171372 172782;172783;172784 172782 3 TFFLEALR YATDTKATVVGKPEKTFFLEALRGTGCEPE VVGKPEKTFFLEALRGTGCEPEEAVMIGD_ K T F L R G 1 1 0 0 0 0 1 0 0 0 2 0 0 2 0 0 1 0 0 0 0 0 8 0 995.54402 K7ER15;Q9H0R4 K7ER15 183 190 HDHD2 Haloacid dehalogenase-like hydrolase domain-containing protein 2 yes no 2 0.024653 43.246 By MS/MS 2 0.85922 0.8201 14.996 2 Median 0.85922 0.8201 14.996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2434900 1209500 1225400 2434900 1209500 1225400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32778 1396 34461 171373;171374 172785;172786 172786 2 TFFPEYTHQLFGDDETAFGYK LKLVRFPEDLENDIRTFFPEYTHQLFGDDE THQLFGDDETAFGYKGLKILLYYIAGSLST R T F Y K G 1 0 0 2 0 1 2 2 1 0 1 1 0 4 1 0 3 0 2 0 0 0 21 0 2512.1223 O14929 O14929 50 70 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 3 0.0082889 21.599 By MS/MS 1 1.1482 0.97899 NaN 1 Median NaN NaN NaN 0 0 Median 1.1482 0.97899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1011600 471070 540560 0 0 0 1011600 471070 540560 0 0 0 0 0 0 0 0 0 0 0 0 32779 1504 34462 171375 172787 172787 1 TFFSFPAVVAPFK VFEHTFHVREGDEQRTFFSFPAVVAPFKCS QRTFFSFPAVVAPFKCSVLPLSQNQEFMPF R T F F K C 2 0 0 0 0 0 0 0 0 0 0 1 0 4 2 1 1 0 0 2 0 0 13 0 1456.7755 P41250 P41250 603 615 GARS Glycine--tRNA ligase yes yes 2 0.00087106 63.283 By MS/MS By matching 4 2 0.80402 0.75728 28.526 6 Median 0.80596 0.78798 6.108 4 0 Median 0.60526 0.53915 46.83 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14644000 7688900 6954800 13432000 7007300 6425100 1211300 681580 529720 0 0 0 0 0 0 0 0 0 0 0 0 32780 2301 34463 171376;171377;171378;171379;171380;171381 172788;172789;172790;172791;172792 172790 5 TFGENYVQELLEK KPADMVIEAYGHGQRTFGENYVQELLEKAS QRTFGENYVQELLEKASNPKILSLCPEIKW R T F E K A 0 0 1 0 0 1 3 1 0 0 2 1 0 1 0 0 1 0 1 1 0 0 13 0 1568.7722 O94903;E5RFX7;E5RG77 O94903 64 76 PROSC Proline synthase co-transcribed bacterial homolog protein yes no 2 2.0159E-05 94.465 By MS/MS 1 1.8367 1.5421 NaN 1 Median NaN NaN NaN 0 0 Median 1.8367 1.5421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3608800 1480900 2127900 0 0 0 3608800 1480900 2127900 0 0 0 0 0 0 0 0 0 0 0 0 32781 1734 34464 171382 172793 172793 1 TFGETHPFTK FNALGGWGELQNSVKTFGETHPFTKLVVDL QNSVKTFGETHPFTKLVVDLTDIDPDVAYS K T F T K L 0 0 0 0 0 0 1 1 1 0 0 1 0 2 1 0 3 0 0 0 0 0 10 0 1163.5611 P09960 P09960 356 365 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.00022967 128.27 By MS/MS By MS/MS 1 1 1.0112 0.90401 4.3123 2 Median 0.91862 0.87686 NaN 1 0 Median 1.113 0.932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17907000 8824500 9082600 5849100 3159600 2689400 12058000 5664900 6393200 0 0 0 0 0 0 0 0 0 0 0 0 32782 1924 34465 171383;171384 172794;172795;172796;172797 172796 4 TFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNK ATSNTSNLFGNSGAKTFGGFASSSFGEQKP GSVASQGFGFSSPNKTGGFGAAPVFGSPPT K T F N K T 2 0 1 0 0 2 1 9 0 0 0 2 0 6 2 9 3 0 0 1 0 0 38 1 3690.6863 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;B7ZAV2;A0A494C0Y1 A0A494C1F2 1917 1954 NUP214 Nuclear pore complex protein Nup214 yes no 3 1.6814E-05 28.327 By matching By MS/MS 1 2 0.6477 0.74819 5.3116 3 Plateau 0.71009 0.72109 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61863 0.71002 7.4047 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9314000 5057900 4256100 2212200 1279900 932300 0 0 0 7101800 3778000 3323800 0 0 0 0 0 0 0 0 0 32783 467 34466 171385;171386;171387 172798 172798 1 TFGHLLR LIAMGEEIGAEMALRTFGHLLRYGEPTLRR IGAEMALRTFGHLLRYGEPTLRRAVPLALA R T F L R Y 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 842.47627 Q13200 Q13200 674 680 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2 0.010361 82.263 By MS/MS 1 1.086 1.0482 NaN 1 Median 1.086 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7636900 3749700 3887100 7636900 3749700 3887100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32784 2796 34467 171388 172799;172800 172800 2 TFGHNTMDAVPR QHYYYDTHTNTYYLRTFGHNTMDAVPRIDH YLRTFGHNTMDAVPRIDHYRHTAAQLGEKL R T F P R I 1 1 1 1 0 0 0 1 1 0 0 0 1 1 1 0 2 0 0 1 0 0 12 0 1344.6245 P55011;G3XAL9 P55011 212 223 SLC12A2 Solute carrier family 12 member 2 yes no 3 0.00014922 75.479 By MS/MS By MS/MS 1 1 0.99424 0.91096 20.281 2 Median 0.78284 0.78925 NaN 1 0 Median 1.2627 1.0514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8155100 3840600 4314500 1664700 795050 869630 6490400 3045500 3444900 0 0 0 0 0 0 0 0 0 0 0 0 32785 2490 34468 171389;171390 172801;172802 172802 1 TFGLTLGHVVDEIQR KFSAGADIRGFSAPRTFGLTLGHVVDEIQR TFGLTLGHVVDEIQRNEKPVVAAIQGMAFG R T F Q R N 0 1 0 1 0 1 1 2 1 1 2 0 0 1 0 0 2 0 0 2 0 0 15 0 1683.8944 Q08426 Q08426 71 85 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 3 0.056124 11.055 By MS/MS By matching 2 1 1.3818 1.1775 92.779 3 Median NaN NaN NaN 0 0 Median 0.64495 0.56082 116.4 2 0 Median NaN NaN NaN 0 0 Median 1.3818 1.1775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4151200 1829200 2322000 0 0 0 3618400 1599800 2018500 0 0 0 532800 229330 303470 0 0 0 0 0 0 32786 2740 34469 171391;171392;171393 172803 172803 1 TFGMAEEYHR KDNALLSAIEESRKRTFGMAEEYHRESMLV ESRKRTFGMAEEYHRESMLVEWEQVKQRIL R T F H R E 1 1 0 0 0 0 2 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 10 0 1239.5343 Q8N1F7;H3BVG0;H3BM93;H3BRI8;H3BNN5;H3BV11 Q8N1F7 121 130 NUP93 Nuclear pore complex protein Nup93 yes no 2;3 0.00010226 126.41 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 2 3 2 1 2 1.1823 1.1222 13.388 12 Median 1.1674 1.1606 3.7088 2 0 Median 1.3692 1.2339 30.16 2 0 Median 1.0789 1.1569 9.6593 3 0 Median 1.226 1.0565 7.4833 2 0 Median 0.88522 0.94345 NaN 1 0 Median 1.4127 1.1867 12.707 2 0 Median 41814000 18858000 22956000 2373100 1029900 1343200 1834600 682260 1152300 27927000 12698000 15229000 6662000 2879000 3783000 1634400 1026100 608230 1383100 542850 840270 32787 3356 34470;34471 171394;171395;171396;171397;171398;171399;171400;171401;171402;171403;171404;171405 172804;172805;172806;172807;172808;172809;172810 172809 1716 7 TFGPVYEGKDLIAQAR LKGRGVTYLFPIQVKTFGPVYEGKDLIAQA FGPVYEGKDLIAQARTGTGKTFSFAIPLIE K T F A R T 2 1 0 1 0 1 1 2 0 1 1 1 0 1 1 0 1 0 1 1 0 0 16 1 1763.9206 Q9BQ39;A0A087WVC1 Q9BQ39 167 182 DDX50 ATP-dependent RNA helicase DDX50 yes no 3 4.2823E-05 54.7 By MS/MS 1 0.7759 0.85612 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7759 0.85612 NaN 1 0 Median NaN NaN NaN 0 0 Median 3342900 1857200 1485700 0 0 0 0 0 0 0 0 0 0 0 0 3342900 1857200 1485700 0 0 0 32788 3781 34472 171406 172811;172812 172811 2 TFGVSPLR CSAPCSTSYCCLAPRTFGVSPLRRWIQRPQ YCCLAPRTFGVSPLRRWIQRPQNCNTGSSG R T F L R R 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 8 0 875.4865 Q5T750 Q5T750 177 184 XP32 Skin-specific protein 32 yes yes 2 8.9252E-05 111.01 By MS/MS By MS/MS 1 1 0.15101 0.12845 NaN 1 Median NaN NaN NaN 0 0 Median 0.15101 0.12845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3562700 3069800 492870 0 0 0 2972600 2479700 492870 0 0 0 590130 590130 0 0 0 0 0 0 0 32789 3095 34473 171407;171408 172813;172814 172813 2 TFGVSPLRR CSAPCSTSYCCLAPRTFGVSPLRRWIQRPQ CCLAPRTFGVSPLRRWIQRPQNCNTGSSGC R T F R R W 0 2 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 9 1 1031.5876 Q5T750 Q5T750 177 185 XP32 Skin-specific protein 32 yes yes 2 0.044087 44.447 By MS/MS 1 0.086229 0.077213 NaN 1 Median NaN NaN NaN 0 0 Median 0.086229 0.077213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 363960 341790 22168 0 0 0 363960 341790 22168 0 0 0 0 0 0 0 0 0 0 0 0 32790 3095 34474 171409 172815 172815 1 TFHDLEGNAVK ANPKPKRVFLQHMTRTFHDLEGNAVKRDSG HMTRTFHDLEGNAVKRDSGIWINGFDYTGI R T F V K R 1 0 1 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1229.6041 Q7Z2K6;E7ER77 Q7Z2K6 694 704 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 2;3 5.2595E-05 95.483 By MS/MS 3 1.1902 1.0485 5.7599 2 Median NaN NaN NaN 0 0 Median 1.1902 1.0485 5.7599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13244000 5963500 7280500 0 0 0 13244000 5963500 7280500 0 0 0 0 0 0 0 0 0 0 0 0 32791 883 34475 171410;171411;171412 172816;172817;172818;172819 172817 4 TFHEEEGIDEVIVPLPTWNAR FTKKEDTMTCLFLSRTFHEEEGIDEVIVPL GIDEVIVPLPTWNARTREPVTDNVEKFAIE R T F A R T 1 1 1 1 0 0 4 1 1 2 1 0 0 1 2 0 2 1 0 2 0 0 21 0 2451.207 Q9Y6X9 Q9Y6X9 133 153 MORC2 MORC family CW-type zinc finger protein 2 yes yes 3 0.014752 17.148 By MS/MS 1 0.7279 0.79118 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7279 0.79118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1554900 894350 660550 0 0 0 0 0 0 1554900 894350 660550 0 0 0 0 0 0 0 0 0 32792 4501 34476 171413 172820 172820 1 TFHETLDCCGSSTLTALTTSVLK AVVDDDANNAKAVVKTFHETLDCCGSSTLT CGSSTLTALTTSVLKNNLCPSGSNIISNLF K T F L K N 1 0 0 1 2 0 1 1 1 0 4 1 0 1 0 3 6 0 0 1 0 0 23 0 2541.2091 E9PJK1;E9PRJ8;H0YDL9;H0YDJ9;E9PIF1;A6NMH8;P60033 E9PJK1 78 100 CD81 Tetraspanin;CD81 antigen yes no 3 1.4029E-11 51.834 By MS/MS 1 0.91605 0.8051 NaN 1 Median NaN NaN NaN 0 0 Median 0.91605 0.8051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8166700 4209600 3957100 0 0 0 8166700 4209600 3957100 0 0 0 0 0 0 0 0 0 0 0 0 32793 527 34477 171414 172821 172821 1 TFHFNTVEEVHSR VFLGTRGNTAAQLSKTFHFNTVEEVHSRFQ SKTFHFNTVEEVHSRFQSLNADINKRGASY K T F S R F 0 1 1 0 0 0 2 0 2 0 0 0 0 2 0 1 2 0 0 2 0 0 13 0 1601.7587 P30740 P30740 57 69 SERPINB1 Leukocyte elastase inhibitor yes yes 3;4 1.3376E-07 107.65 By MS/MS By MS/MS By MS/MS 2 3 2 1.1446 1.0339 22.932 7 Median 0.99152 0.989 16.464 2 0 Median 1.1877 1.0339 26.18 3 0 Plateau 1.1579 1.2563 1.4556 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49023000 25028000 23995000 27282000 14319000 12963000 10248000 4991500 5256600 11492000 5717000 5775400 0 0 0 0 0 0 0 0 0 32794 2197 34478 171415;171416;171417;171418;171419;171420;171421 172822;172823;172824;172825;172826;172827;172828;172829 172825 8 TFHGAGLVVPVDK RTVKMKQRDKKVVTKTFHGAGLVVPVDKND TKTFHGAGLVVPVDKNDVGYRELPETDADL K T F D K N 1 0 0 1 0 0 0 2 1 0 1 1 0 1 1 0 1 0 0 3 0 0 13 0 1338.7296 Q9NWY4 Q9NWY4 221 233 C4orf27 UPF0609 protein C4orf27 yes yes 3 6.3674E-05 80.17 By MS/MS By MS/MS 2 1 1.0078 1.0463 37.884 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72157 0.72255 52.355 2 0 Median 0.74292 0.62862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12979000 6875500 6103200 0 0 0 0 0 0 10322000 5309400 5013100 2656300 1566100 1090100 0 0 0 0 0 0 32795 4153 34479 171422;171423;171424 172830;172831;172832 172831 3 TFHGAGLVVPVDKNDVGYR RTVKMKQRDKKVVTKTFHGAGLVVPVDKND AGLVVPVDKNDVGYRELPETDADLKRICKT K T F Y R E 1 1 1 2 0 0 0 3 1 0 1 1 0 1 1 0 1 0 1 4 0 0 19 1 2043.0538 Q9NWY4 Q9NWY4 221 239 C4orf27 UPF0609 protein C4orf27 yes yes 4 5.0627E-05 39.387 By matching By MS/MS By matching 1 1 1 0.89026 1.0057 5.135 3 Median 0.89026 0.95344 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88439 1.0057 NaN 1 0 Median 1.2017 1.0565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10334000 5157000 5177300 2265800 1173300 1092500 0 0 0 7159700 3550500 3609200 908720 433160 475560 0 0 0 0 0 0 32796 4153 34480 171425;171426;171427 172833 172833 1 TFHHVYSGKDLIAQAR LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA FHHVYSGKDLIAQARTGTGKTFSFAIPLIE K T F A R T 2 1 0 1 0 1 0 1 2 1 1 1 0 1 0 1 1 0 1 1 0 0 16 1 1841.9537 Q9NR30 Q9NR30 216 231 DDX21 Nucleolar RNA helicase 2 yes yes 4 0.045578 21.803 By MS/MS 1 0.74684 0.84891 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74684 0.84891 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2528800 1542200 986640 0 0 0 0 0 0 2528800 1542200 986640 0 0 0 0 0 0 0 0 0 32797 4076 34481 171428 172834 172834 1 TFHIFYQLLSGAGEHLK LLEKSRAVRQAKDERTFHIFYQLLSGAGEH HIFYQLLSGAGEHLKSDLLLEGFNNYRFLS R T F L K S 1 0 0 0 0 1 1 2 2 1 3 1 0 2 0 1 1 0 1 0 0 0 17 0 1960.0207 P35580 P35580 280 296 MYH10 Myosin-10 yes yes 3 5.7797E-05 58.09 By MS/MS By MS/MS 1 1 1.2639 1.1658 22.069 2 Median 1.4188 1.3627 NaN 1 0 Median 1.1258 0.99736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18333000 9439900 8892600 5029400 2167800 2861600 13303000 7272100 6031000 0 0 0 0 0 0 0 0 0 0 0 0 32798 2245 34482 171429;171430 172835;172836;172837 172837 3 TFHIFYYLLSGAGEHLK LLEKSRAIRQAKEERTFHIFYYLLSGAGEH HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS R T F L K T 1 0 0 0 0 0 1 2 2 1 3 1 0 2 0 1 1 0 2 0 0 0 17 0 1995.0254 P35579 P35579 273 289 MYH9 Myosin-9 yes yes 3 6.7679E-11 101.01 By MS/MS By MS/MS By matching 1 6 1 1.0873 0.96332 48.298 8 Median 1.3463 1.2928 NaN 1 0 Median 1.0873 0.96332 47.574 6 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65436 0.55324 NaN 1 0 Median 50482000 21285000 29198000 5142500 2502300 2640200 44193000 18113000 26079000 0 0 0 0 0 0 0 0 0 1147100 669110 478040 32799 2244 34483 171431;171432;171433;171434;171435;171436;171437;171438 172838;172839;172840;172841;172842;172843;172844;172845;172846;172847 172843 10 TFIAIKPDGVQR PISSCDTGTMANCERTFIAIKPDGVQRGLV CERTFIAIKPDGVQRGLVGEIIKRFEQKGF R T F Q R G 1 1 0 1 0 1 0 1 0 2 0 1 0 1 1 0 1 0 0 1 0 0 12 1 1343.7561 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028 Q32Q12 32 43 NME1;NME1-NME2;NME2 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B no no 2;3 6.0535E-40 219.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 2 4 4 1 1.1287 1.0257 24.538 27 Median 0.96482 0.94609 29.105 9 1 Median 1.1379 1.0047 5.7021 7 0 Median 1.1219 1.1491 0.8104 2 0 Median 1.177 0.99865 12.078 4 0 Median 1.2724 1.4323 4.5237 4 1 Median 1.4956 1.1959 NaN 1 0 Median 5742200000 2659100000 3083100000 3014400000 1427300000 1587000000 2218500000 994840000 1223700000 470340000 219910000 250420000 26940000 11708000 15232000 8867800 4005400 4862400 3133400 1292700 1840700 32800 3008;2018 34484 171439;171440;171441;171442;171443;171444;171445;171446;171447;171448;171449;171450;171451;171452;171453;171454;171455;171456;171457;171458;171459;171460;171461;171462;171463;171464;171465 172848;172849;172850;172851;172852;172853;172854;172855;172856;172857;172858;172859;172860;172861;172862;172863;172864;172865;172866;172867;172868;172869;172870;172871;172872;172873;172874;172875;172876;172877;172878;172879;172880;172881;172882;172883;172884;172885;172886;172887;172888;172889;172890;172891;172892;172893;172894;172895;172896;172897;172898;172899;172900;172901 172880 54 TFIFLNAK DLSGRQERKQIFKGKTFIFLNAKQHKKLSS KQIFKGKTFIFLNAKQHKKLSSAVVFGGGE K T F A K Q 1 0 1 0 0 0 0 0 0 1 1 1 0 2 0 0 1 0 0 0 0 0 8 0 952.5382 O60934;A0A0C4DG07;E5RGU1;E5RGR7 O60934 226 233 NBN Nibrin yes no 2 0.024816 43.124 By MS/MS By matching 2 1 1.1407 1.1814 11.462 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.031 1.082 12.424 2 0 Median 1.3993 1.2292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3116700 1510800 1605900 0 0 0 0 0 0 2973700 1433500 1540200 143010 77297 65718 0 0 0 0 0 0 32801 1641 34485 171466;171467;171468 172902;172903 172903 2 TFIGPGGNMPGYLRPETAQGIFLNFK GNDLSPPVSFNLMFKTFIGPGGNMPGYLRP YLRPETAQGIFLNFKRLLEFNQGKLPFAAA K T F F K R 1 1 2 0 0 1 1 5 0 2 2 1 1 3 3 0 2 0 1 0 0 0 26 1 2824.4371 P41250 P41250 284 309 GARS Glycine--tRNA ligase yes yes 3 0.024446 13.896 By MS/MS By MS/MS 1 1 0.68326 0.69267 3.2851 2 Median 0.69006 0.70895 NaN 1 0 Median 0.67653 0.67677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15437000 8665800 6771300 13481000 7537400 5943900 1955800 1128400 827370 0 0 0 0 0 0 0 0 0 0 0 0 32802 2301 34486 171469;171470 172904;172905 172905 2 TFIIGELHPDDRPK FEDVGHSTDAREMSKTFIIGELHPDDRPKL KTFIIGELHPDDRPKLNKPPETLITTIDSS K T F P K L 0 1 0 2 0 0 1 1 1 2 1 1 0 1 2 0 1 0 0 0 0 0 14 1 1636.8573 P00167;J3KNC7 P00167 78 91 CYB5A Cytochrome b5 yes no 3 0.00033337 51.009 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.79011 0.78067 10.87 3 Median 0.79011 0.78067 NaN 1 0 Median 1.0457 0.92249 NaN 1 0 Median 0.72166 0.7522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15331000 7485400 7845300 9267900 4589100 4678900 1319000 713440 605600 3455000 1889200 1565800 0 0 0 1288800 293730 995050 0 0 0 32803 1812 34487 171471;171472;171473;171474 172906;172907;172908;172909;172910 172907 5 TFIQPNMR LPYVEVLCKNRYVGRTFIQPNMRLRQLGVA KNRYVGRTFIQPNMRLRQLGVAKKFGVLSD R T F M R L 0 1 1 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 8 0 1005.5066 Q06203 Q06203 356 363 PPAT Amidophosphoribosyltransferase yes yes 2 0.026005 67.035 By MS/MS 2 0.89928 0.89032 NaN 1 Median 0.89928 0.89032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3263700 1554400 1709300 3263700 1554400 1709300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32804 2722 34488 171475;171476 172911;172912 172911 2 TFITIGDR PPAPNPTPPRNLDSRTFITIGDRNFEVEAD PRNLDSRTFITIGDRNFEVEADDLVTISEL R T F D R N 0 1 0 1 0 0 0 1 0 2 0 0 0 1 0 0 2 0 0 0 0 0 8 0 921.49198 P46734;E9PRZ0;J3QR49 P46734 48 55 MAP2K3 Dual specificity mitogen-activated protein kinase kinase 3 yes no 2 0.0074447 67.032 By matching By matching By MS/MS 1 1 1 1.1016 1.1269 3.3413 3 Plateau 1.1016 1.1081 NaN 1 0 Median 1.205 1.072 NaN 1 0 Median 1.0535 1.1461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4852100 2473700 2378300 2205700 1004100 1201500 379220 188830 190390 2267200 1280800 986400 0 0 0 0 0 0 0 0 0 32805 2343 34489 171477;171478;171479 172913 172913 1 TFITQQGIK LDFGYPQNSETGALKTFITQQGIKSQHTKE ETGALKTFITQQGIKSQHTKEEQSQITSQV K T F I K S 0 0 0 0 0 2 0 1 0 2 0 1 0 1 0 0 2 0 0 0 0 0 9 0 1034.576 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8 A0A087WY71 131 139 AP2M1 AP-2 complex subunit mu yes no 2 0.00056678 113.7 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1.07 0.96618 12.031 6 Median 1.1131 1.0842 20.831 2 0 Median 1.2885 1.0941 NaN 1 1 Median 1.0027 0.96547 NaN 1 0 Median 1.07 0.94277 3.5724 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61500000 28408000 33092000 13678000 5960800 7717100 7432100 3251800 4180300 17482000 8528900 8953000 22908000 10666000 12241000 0 0 0 0 0 0 32806 78 34490 171480;171481;171482;171483;171484;171485 172914;172915;172916;172917;172918;172919 172914 6 TFITSDFMTGIPATPGNEIPVEVVLK PLQKQPSCQRSVVIRTFITSDFMTGIPATP PATPGNEIPVEVVLKMVTEIKKIPGISRIM R T F L K M 1 0 1 1 0 0 2 2 0 3 1 1 1 2 3 1 4 0 0 3 0 0 26 0 2775.4405 P49915 P49915 639 664 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 0.065224 6.0949 By MS/MS 2 0.62728 0.5618 14.88 2 Median NaN NaN NaN 0 0 Median 0.62728 0.5618 14.88 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 773500 452990 320510 0 0 0 773500 452990 320510 0 0 0 0 0 0 0 0 0 0 0 0 32807 2405 34491 171486;171487 172920 172920 1 TFIVGAQMNVK DSLEVLVKTLDSQTRTFIVGAQMNVKEFKE SQTRTFIVGAQMNVKEFKEHIAASVSIPSE R T F V K E 1 0 1 0 0 1 0 1 0 1 0 1 1 1 0 0 1 0 0 2 0 0 11 0 1206.6431 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6TC96 P46379 30 40 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.0013 59.8 By MS/MS By matching By matching By matching 1 1 2 1 1.3515 1.4417 29.905 5 Median 1.6566 1.6119 NaN 1 0 Median 1.3515 1.1561 NaN 1 0 Median 1.6521 1.8145 32.523 2 0 Median 1.2831 1.0759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17854000 7066100 10788000 6230000 2627900 3602100 4834400 1945700 2888700 6007500 2105000 3902600 782350 387640 394710 0 0 0 0 0 0 32808 8 34492 171488;171489;171490;171491;171492 172921 172921 1 TFKPAIQELKPPTYK VQSILTKMTGLNLQKTFKPAIQELKPPTYK TFKPAIQELKPPTYKLMTQAQLEEATRQAV K T F Y K L 1 0 0 0 0 1 1 0 0 1 1 3 0 1 3 0 2 0 1 0 0 0 15 2 1759.9873 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3 G5E9W7 49 63 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3;4 0.0079197 25.72 By MS/MS By matching 2 1 0.70997 0.72801 10.179 3 Median 0.70567 0.7236 0.85866 2 0 Median 0.87125 0.86284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19039000 11313000 7726300 18897000 11245000 7652400 141830 67889 73938 0 0 0 0 0 0 0 0 0 0 0 0 32809 1130 34493 171493;171494;171495 172922;172923;172924 172924 3 TFLAQHASL LVPDSVKKELLQRIRTFLAQHASL______ LLQRIRTFLAQHASL_______________ R T F S L - 2 0 0 0 0 1 0 0 1 0 2 0 0 1 0 1 1 0 0 0 0 0 9 0 986.51853 Q9NPA8 Q9NPA8 93 101 ENY2 Transcription and mRNA export factor ENY2 yes yes 2 0.0030455 83.753 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 209620000 0 0 115840000 0 0 0 0 0 70749000 0 0 0 0 0 0 0 0 23030000 0 0 32810 4045 34494 171496;171497;171498 172925;172926;172927 172927 3 TFLAVKPDGVQR FANLFPAACTGAHERTFLAVKPDGVQRRLV HERTFLAVKPDGVQRRLVGEIVRRFERKGF R T F Q R R 1 1 0 1 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 2 0 0 12 1 1329.7405 Q13232;H3BPD9;H3BMQ7;H3BRA8 Q13232 24 35 NME3 Nucleoside diphosphate kinase 3 yes no 2;3 1.7585E-05 132.91 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.95655 0.99614 31.01 7 Median 0.72942 0.71585 4.8861 2 0 Median 1.221 1.0776 0.21349 2 0 Median 0.68145 0.70909 48.07 2 1 Median 1.3329 1.1799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 86137000 47709000 38428000 59863000 34311000 25552000 14433000 6594800 7838500 10550000 6259800 4289900 1291300 544160 747160 0 0 0 0 0 0 32811 2798 34495 171499;171500;171501;171502;171503;171504;171505 172928;172929;172930;172931;172932;172933;172934;172935;172936;172937;172938 172936 11 TFLFSATMTK TEVDKILKVIPRDRKTFLFSATMTKKVQKL PRDRKTFLFSATMTKKVQKLQRAALKNPVK K T F T K K 1 0 0 0 0 0 0 0 0 0 1 1 1 2 0 1 3 0 0 0 0 0 10 0 1145.5791 Q9H0S4;F5H1N9 Q9H0S4 201 210 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.0068526 62.823 By MS/MS 2 1.0808 1.0546 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0808 1.0546 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7336500 3577600 3758900 0 0 0 0 0 0 7336500 3577600 3758900 0 0 0 0 0 0 0 0 0 32812 3928 34496 171506;171507 172939;172940 172939 2 TFLHTVQR PSSPCPASKVVRPLRTFLHTVQRNQMLMTP KVVRPLRTFLHTVQRNQMLMTPTSAPRSVM R T F Q R N 0 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 2 0 0 1 0 0 8 0 1000.5454 Q9NQS7 Q9NQS7 494 501 INCENP Inner centromere protein yes yes 2 0.0074447 67.032 By MS/MS By matching 1 1 1.1769 1.0911 18.163 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1749 1.2406 NaN 1 0 Median 1.179 0.95957 NaN 1 0 Median 4753300 2267600 2485700 0 0 0 0 0 0 0 0 0 0 0 0 3598300 1810800 1787500 1155000 456830 698130 32813 4065 34497 171508;171509 172941 172941 1 TFLLEYHNR VSGVKDVDDFFEHERTFLLEYHNRVKDASA FFEHERTFLLEYHNRVKDASAKSDRMTRSH R T F N R V 0 1 1 0 0 0 1 0 1 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1191.6037 A0A0A0MRI2;Q9UNH7;G3V5X9 A0A0A0MRI2 227 235 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 3 0.0067684 48.423 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3790400 0 3790400 3790400 0 3790400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32814 161 34498 171510 172942 172942 1 TFLNMFVDSNQDAR NSKLVEGFYPAPGLKTFLNMFVDSNQDARR KTFLNMFVDSNQDARRRSVNEDDNPPSPIG K T F A R R 1 1 2 2 0 1 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 14 0 1656.7566 O60244 O60244 961 974 MED14 Mediator of RNA polymerase II transcription subunit 14 yes yes 2 0.0010403 51.092 By MS/MS 3 1.0999 1.1996 19.747 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0999 1.1996 19.747 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044800 1621800 1423000 0 0 0 0 0 0 3044800 1621800 1423000 0 0 0 0 0 0 0 0 0 32815 1606 34499 171511;171512;171513 172943;172944 172943 2 TFLQDLAR ______________________________ ______________________________ K T F A R G 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 8 0 962.51853 O14681;E9PLB8;E9PL33;E9PM05;E9PS58;E9PK61;E9PQN7;A0A087WV44 O14681 7 14 EI24 Etoposide-induced protein 2.4 homolog yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS 1 1 1 1.2075 1.0086 22.632 3 Median 1.0052 0.98881 NaN 1 0 Median 1.2075 1.0086 NaN 1 0 Median 1.3539 1.4774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18646000 8830500 9815400 9059100 4551800 4507300 6145200 2676500 3468700 3441700 1602200 1839400 0 0 0 0 0 0 0 0 0 32816 1489 34500 171514;171515;171516 172945;172946;172947;172948 172945 4 TFLQTVSSEK RVQFCPFEKNVESTRTFLQTVSSEKVRSTN VESTRTFLQTVSSEKVRSTNLNCSVIADVR R T F E K V 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 10 0 1138.587 Q96EL3 Q96EL3 32 41 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 2 0.00066973 105.52 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.402 1.2046 20.641 4 Median 1.2513 1.127 NaN 1 0 Median 1.5709 1.2877 NaN 1 1 Median 1.0589 1.0055 NaN 1 0 Median 2.0305 1.6256 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176220000 75681000 100540000 58169000 24975000 33193000 69648000 30150000 39498000 32219000 16020000 16199000 16185000 4535300 11650000 0 0 0 0 0 0 32817 3637 34501 171517;171518;171519;171520 172949;172950;172951;172952;172953;172954;172955 172950 7 TFLQTVSSEKVR RVQFCPFEKNVESTRTFLQTVSSEKVRSTN STRTFLQTVSSEKVRSTNLNCSVIADVRHD R T F V R S 0 1 0 0 0 1 1 0 0 0 1 1 0 1 0 2 2 0 0 2 0 0 12 1 1393.7565 Q96EL3 Q96EL3 32 43 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 3 0.00030977 58.674 By MS/MS By matching By matching 1 1 1 1.3881 1.3612 18.38 3 Median 1.3881 1.3612 NaN 1 0 Median 1.6932 1.4949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89188 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median 6825400 2825900 3999500 2846300 1212900 1633400 1614000 483410 1130600 0 0 0 0 0 0 2365100 1129600 1235500 0 0 0 32818 3637 34502 171521;171522;171523 172956;172957 172957 2 TFLTLSLQDMASR CLSSLYKKNIQRLTKTFLTLSLQDMASRVQ TKTFLTLSLQDMASRVQLSGPQEAEKYVLH K T F S R V 1 1 0 1 0 1 0 0 0 0 3 0 1 1 0 2 2 0 0 0 0 0 13 0 1481.7548 Q9UNS2;H7C3P9 Q9UNS2 313 325 COPS3 COP9 signalosome complex subunit 3 yes no 2 6.7811E-07 131.82 By MS/MS By MS/MS By MS/MS 3 1 1 1.1945 1.1676 19.13 5 Median 1.1564 1.1676 14.835 3 3 Median 1.2296 1.0717 NaN 1 0 Median 1.4286 1.5494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29565000 13189000 16376000 8321000 3902800 4418200 18172000 7892000 10280000 3071700 1394000 1677600 0 0 0 0 0 0 0 0 0 32819 4350 34503;34504 171524;171525;171526;171527;171528 172958;172959;172960;172961;172962;172963 172962 1929 6 TFLTNDQTK IQRAEEMKSGLKDFKTFLTNDQTKVTEEEN GLKDFKTFLTNDQTKVTEEENKGSGTGAAG K T F T K V 0 0 1 1 0 1 0 0 0 0 1 1 0 1 0 0 3 0 0 0 0 0 9 0 1066.5295 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2182 2190 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.0045216 60.436 By MS/MS By MS/MS By matching 2 2 1 1.0214 1.0187 21.519 5 Median NaN NaN NaN 0 0 Median 1.2933 1.1313 28.671 2 0 Median 0.984 1.077 7.8599 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91354 0.78288 NaN 1 0 Median 15711000 7600900 8110100 0 0 0 5069900 1978700 3091200 8894400 4672600 4221800 0 0 0 0 0 0 1746700 949650 797040 32820 2401;525;3762 34505 171529;171530;171531;171532;171533 172964;172965;172966 172966 3 TFLVGER VRRILGLLDAYLKTRTFLVGERVTLADITV LDAYLKTRTFLVGERVTLADITVVCTLLWL R T F E R V 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 820.4443 P26641 P26641 150 156 EEF1G Elongation factor 1-gamma yes yes 2 0.0013251 132.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 6 1 7 1.3824 1.2115 20.892 23 Median 1.2901 1.2465 15.001 4 0 Median 1.7115 1.474 54.486 2 0 Median 1.3988 1.3357 12.299 3 0 Median 1.2797 1.082 11.897 6 0 Median 1.5152 1.5102 NaN 1 1 Median 1.3887 1.1691 21.102 7 0 Median 1737600000 773330000 964320000 61024000 26933000 34092000 44109000 20357000 23752000 235950000 97095000 138860000 1351100000 609400000 741680000 13571000 5089600 8481500 31919000 14459000 17460000 32821 2149 34506 171534;171535;171536;171537;171538;171539;171540;171541;171542;171543;171544;171545;171546;171547;171548;171549;171550;171551;171552;171553;171554;171555;171556 172967;172968;172969;172970;172971;172972;172973;172974;172975;172976;172977;172978;172979;172980;172981;172982;172983;172984;172985;172986;172987;172988;172989;172990;172991;172992;172993;172994;172995;172996;172997;172998;172999;173000;173001;173002 172988 36 TFLVWVNEEDHLR RDWPDARGIWHNDNKTFLVWVNEEDHLRVI NKTFLVWVNEEDHLRVISMQKGGNMKEVFT K T F L R V 0 1 1 1 0 0 2 0 1 0 2 0 0 1 0 0 1 1 0 2 0 0 13 0 1656.826 P12277;H0YJG0 P12277 224 236 CKB Creatine kinase B-type yes no 2;3 5.3313E-05 153.12 By MS/MS By MS/MS By MS/MS 2 3 1 0.95263 0.89192 10.181 6 Median 0.78509 0.80488 8.4373 2 0 Median 1.0972 0.95539 6.8248 3 0 Plateau 0.92328 1.0025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82873000 40296000 42577000 9829400 5012600 4816800 66003000 31589000 34414000 7040400 3694600 3345900 0 0 0 0 0 0 0 0 0 32822 1980 34507 171557;171558;171559;171560;171561;171562 173003;173004;173005;173006;173007;173008;173009;173010 173010 8 TFNIKNDFTEEEEAQVR VANMIKGKTPEEIRKTFNIKNDFTEEEEAQ NIKNDFTEEEEAQVRKENQWCEEK______ K T F V R K 1 1 2 1 0 1 4 0 0 1 0 1 0 2 0 0 2 0 0 1 0 0 17 1 2068.9702 E5RJR5;P63208 E5RJR5 138 154 SKP1 S-phase kinase-associated protein 1 yes no 3 8.9734E-14 117.37 By MS/MS By MS/MS 1 1 0.97793 0.97582 19.667 2 Median NaN NaN NaN 0 0 Median 0.96298 0.84913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99311 1.1214 NaN 1 0 Median NaN NaN NaN 0 0 Median 11467000 5691000 5776300 0 0 0 535600 264340 271260 0 0 0 0 0 0 10932000 5426600 5505000 0 0 0 32823 853 34508 171563;171564 173011;173012;173013 173011 3 TFNLPLLMLGGGGYTIR NLTVKGHAKCVEVVKTFNLPLLMLGGGGYT NLPLLMLGGGGYTIRNVARCWTYETAVALD K T F I R N 0 1 1 0 0 0 0 4 0 1 4 0 1 1 1 0 2 0 1 0 0 0 17 0 1821.9811 Q92769 Q92769 291 307 HDAC2 Histone deacetylase 2 yes yes 2 1.8458E-05 77.305 By matching By MS/MS By MS/MS By matching 1 3 2 2 1.0824 0.96452 7.2395 8 Median 1.071 1.0448 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92724 0.92354 2.5969 3 2 Median 1.1862 1.0358 10.503 2 0 Median NaN NaN NaN 0 0 Median 1.1303 0.99794 4.3918 2 0 Median 17748000 9224500 8523700 108430 57531 50900 0 0 0 16692000 8725400 7967100 736770 344730 392040 0 0 0 210590 96881 113710 32824 3555 34509 171565;171566;171567;171568;171569;171570;171571;171572 173014;173015;173016;173017;173018;173019;173020;173021 173021 8 TFNLTAGSLESTEPIYVYK VLNWFSPVQALQKGRTFNLTAGSLESTEPI TAGSLESTEPIYVYKAQGAGVTLPPTPSGS R T F Y K A 1 0 1 0 0 0 2 1 0 1 2 1 0 1 1 2 3 0 2 1 0 0 19 0 2132.0678 Q6P996;H3BND4 Q6P996 662 680 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.00055962 37.426 By MS/MS 1 0.69671 0.68151 NaN 1 Median 0.69671 0.68151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2535900 1393600 1142300 2535900 1393600 1142300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32825 3164 34510 171573 173022;173023 173022 2 TFNMDEYVGLPR IEYYKNGDLSFKYVKTFNMDEYVGLPRDHP YVKTFNMDEYVGLPRDHPESYHSFMWNNFF K T F P R D 0 1 1 1 0 0 1 1 0 0 1 0 1 1 1 0 1 0 1 1 0 0 12 0 1440.6708 P46926;D6RFF8;D6RAY7;D6R9P4;D6R917;D6RB13;Q8TDQ7 P46926 68 79 GNPDA1;GNPDA2 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase;Glucosamine-6-phosphate isomerase 2 yes no 2 0.002872 73.067 By MS/MS 1 1.0917 1.0361 NaN 1 Median 1.0917 1.0361 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4640700 2185600 2455100 4640700 2185600 2455100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32826 2348 34511 171574 173024;173025 173024 2 TFNNTSNLR HEADEKPFICAQCGKTFNNTSNLRTHQRIH CAQCGKTFNNTSNLRTHQRIHTGEKPYKCS K T F L R T 0 1 3 0 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 0 0 0 9 0 1065.5203 A0A0A0MRR1;Q5VV50;Q5VV52;Q5VV51 A0A0A0MRR1 123 131 ZNF691 Zinc finger protein 691 yes no 2 0.019275 40.002 By MS/MS 1 2.3574 2.0335 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.3574 2.0335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 510420 162390 348030 0 0 0 0 0 0 0 0 0 510420 162390 348030 0 0 0 0 0 0 32827 168 34512 171575 173026 173026 1 TFNPGAGLPTDK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG RSKTFNPGAGLPTDKKKGGPSPGDVEAIKN K T F D K K 1 0 1 1 0 0 0 2 0 0 1 1 0 1 2 0 2 0 0 0 0 0 12 0 1216.6088 P09661;H0YMA0;H0YLR3 P09661 180 191 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.00011005 90.827 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.78575 0.757 19.175 5 Median 1.1507 1.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78324 0.73483 NaN 1 0 Median 1.0485 0.86998 NaN 1 0 Median 0.73798 0.757 NaN 1 0 Median 0.78575 0.6495 NaN 1 0 Median 165690000 88993000 76702000 13563000 6639700 6923300 0 0 0 55202000 30291000 24910000 11768000 5387700 6379900 78711000 43219000 35492000 6451500 3455200 2996300 32828 1920 34513 171576;171577;171578;171579;171580 173027;173028;173029;173030;173031;173032;173033;173034;173035 173032 9 TFNPGAGLPTDKK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG SKTFNPGAGLPTDKKKGGPSPGDVEAIKNA K T F K K K 1 0 1 1 0 0 0 2 0 0 1 2 0 1 2 0 2 0 0 0 0 0 13 1 1344.7038 P09661;H0YMA0;H0YLR3 P09661 180 192 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2;3 3.9976E-05 92.866 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 2 0.70394 0.68107 18.136 10 Median 0.52637 0.53575 NaN 1 0 Median 1.0032 0.91883 NaN 1 0 Median 0.72128 0.7175 18.389 2 0 Median 0.84558 0.76183 22.288 2 0 Median 0.66548 0.71449 4.4992 2 0 Median 0.70835 0.61477 12.21 2 0 Median 100030000 57691000 42339000 4586300 3063800 1522400 1766500 920050 846470 36302000 20775000 15527000 13850000 7741600 6108200 40638000 23672000 16966000 2886900 1517600 1369400 32829 1920 34514 171581;171582;171583;171584;171585;171586;171587;171588;171589;171590 173036;173037;173038;173039;173040;173041;173042;173043;173044;173045;173046 173037 11 TFNPGAGLPTDKKK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG KTFNPGAGLPTDKKKGGPSPGDVEAIKNAI K T F K K G 1 0 1 1 0 0 0 2 0 0 1 3 0 1 2 0 2 0 0 0 0 0 14 2 1472.7987 P09661;H0YMA0;H0YLR3 P09661 180 193 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 3 0.0057672 28.986 By MS/MS 1 0.69079 0.75581 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69079 0.75581 NaN 1 0 Median NaN NaN NaN 0 0 Median 4764400 2796900 1967400 0 0 0 0 0 0 0 0 0 0 0 0 4764400 2796900 1967400 0 0 0 32830 1920 34515 171591 173047 173047 1 TFNQVEIKPEMIGHYLGEFSITYKPVK LPEMVGSMVGVYNGKTFNQVEIKPEMIGHY GHYLGEFSITYKPVKHGRPGIGATHSSRFI K T F V K H 0 0 1 0 0 1 3 2 1 3 1 3 1 2 2 1 2 0 2 2 0 0 27 2 3167.6365 K7EM56;A0A0B4J2B4;S4R417;K7ELC2;P62841 K7EM56 68 94 RPS15 40S ribosomal protein S15 yes no 5 0.03079 13.092 By MS/MS By matching 1 1 0.89482 0.85834 10.951 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70289 0.79438 NaN 1 0 Median 1.1392 0.92745 NaN 1 0 Median 7498900 4083300 3415600 0 0 0 0 0 0 0 0 0 0 0 0 5116800 2920800 2196100 2382100 1162600 1219500 32831 221 34516 171592;171593 173048 173048 1 TFNSELYSLNDYKPPISK RRARGLRSDNMEAVKTFNSELYSLNDYKPP SELYSLNDYKPPISKAKMTQITKAAIKAIK K T F S K A 0 0 2 1 0 0 1 0 0 1 2 2 0 1 2 3 1 0 2 0 0 0 18 1 2115.0524 A0A0A0MT33;Q9UPN6 A0A0A0MT33 84 101 SCAF8 Protein SCAF8 yes no 3 0.0008886 32.181 By MS/MS 1 0.79638 0.91246 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79638 0.91246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4220100 2322300 1897800 0 0 0 0 0 0 4220100 2322300 1897800 0 0 0 0 0 0 0 0 0 32832 186 34517 171594 173049 173049 1 TFNTSTGGLLLPSDTK KLYRETNEPVKTKTRTFNTSTGGLLLPSDT FNTSTGGLLLPSDTKRSQIYGSRQIILEKE R T F T K R 0 0 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 16 0 1650.8465 P12956;B1AHC9 P12956 302 317 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 1.347E-09 119.01 By MS/MS By matching By MS/MS By MS/MS 1 1 1 3 1.0973 0.95124 6.2398 6 Median 0.95752 0.8976 NaN 1 0 Median 1.1039 0.94203 NaN 1 0 Median 0.84687 0.82782 NaN 1 0 Median 1.1295 0.9679 0.59702 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105210000 53128000 52081000 13628000 7106400 6521800 4156900 2033500 2123400 73960000 37948000 36011000 13465000 6040000 7425200 0 0 0 0 0 0 32833 1985 34518 171595;171596;171597;171598;171599;171600 173050;173051;173052;173053;173054;173055;173056;173057 173054 8 TFNTSTGGLLLPSDTKR KLYRETNEPVKTKTRTFNTSTGGLLLPSDT NTSTGGLLLPSDTKRSQIYGSRQIILEKEE R T F K R S 0 1 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 17 1 1806.9476 P12956;B1AHC9 P12956 302 318 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3 2.4116E-12 149.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 3 3 1 0.92285 0.93172 27.014 16 Median 0.82668 0.84608 7.1227 3 0 Median 1.1153 1.0136 4.0107 2 0 Median 0.80613 0.83731 11.77 4 0 Median 1.1835 1.0852 12.04 3 0 Plateau 1.6646 1.8307 41.485 3 2 Median 1.0984 0.99479 NaN 1 0 Median 668520000 339450000 329070000 101430000 52440000 48993000 60786000 28446000 32340000 406430000 212730000 193700000 66272000 30511000 35761000 30442000 14087000 16356000 3159000 1242300 1916600 32834 1985 34519 171601;171602;171603;171604;171605;171606;171607;171608;171609;171610;171611;171612;171613;171614;171615;171616 173058;173059;173060;173061;173062;173063;173064;173065;173066;173067;173068;173069;173070;173071;173072;173073;173074;173075;173076;173077;173078;173079 173067 21 TFNVDMYEEIHR LRVEALKMALSFVQRTFNVDMYEEIHRKLS VQRTFNVDMYEEIHRKLSEATRELQNAPDA R T F H R K 0 1 1 1 0 0 2 0 1 1 0 0 1 1 0 0 1 0 1 1 0 0 12 0 1552.698 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070;J3QS84;J3QS88;J3KTB0;J3QLE8;J3QLT0;J3QL53;J3KRE8;J3KSA5;J3KRJ4 C9JFE4 69 80 GPS1 COP9 signalosome complex subunit 1 yes no 3 0.00015736 74.611 By MS/MS By matching 1 1 1.2085 1.1468 14.024 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2304 1.2663 NaN 1 0 Median 1.187 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5534000 2345800 3188200 0 0 0 0 0 0 5221100 2191700 3029500 312840 154100 158740 0 0 0 0 0 0 32835 695 34520 171617;171618 173080 173080 1 TFNVDMYEEIHRK LRVEALKMALSFVQRTFNVDMYEEIHRKLS QRTFNVDMYEEIHRKLSEATRELQNAPDAI R T F R K L 0 1 1 1 0 0 2 0 1 1 0 1 1 1 0 0 1 0 1 1 0 0 13 1 1680.793 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070;J3QS84;J3QS88;J3KTB0;J3QLE8;J3QLT0;J3QL53;J3KRE8;J3KSA5;J3KRJ4 C9JFE4 69 81 GPS1 COP9 signalosome complex subunit 1 yes no 3 0.021731 33.204 By MS/MS 2 1.0595 1.058 4.1163 2 Median 1.0595 1.058 4.1163 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9784900 4694500 5090400 9784900 4694500 5090400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32836 695 34521 171619;171620 173081;173082 173081 2 TFPVLLR EGGQGAPPMYQLYKRTFPVLLRLACDVDQV PMYQLYKRTFPVLLRLACDVDQVTRQLYEP R T F L R L 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 P78527 P78527 965 971 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0047406 99.511 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 0.89117 0.89161 14.713 9 Median 0.87963 0.85929 0.73418 2 0 Median NaN NaN NaN 0 0 Median 0.82121 0.87589 2.516 2 0 Median 1.3538 1.1821 0.80832 2 0 Median 0.89358 0.93959 9.4762 2 0 Median 1.3886 1.1649 NaN 1 0 Median 148490000 80405000 68086000 37353000 19316000 18037000 0 0 0 97895000 54576000 43319000 3583100 1466400 2116700 8815100 4704500 4110600 844860 342420 502440 32837 2647 34522 171621;171622;171623;171624;171625;171626;171627;171628;171629 173083;173084;173085;173086;173087;173088;173089;173090;173091;173092;173093;173094 173084 12 TFQAVMR LKPQMKVQVKLDTGKTFQAVMRFDTDVELT QVKLDTGKTFQAVMRFDTDVELTYFLNGGI K T F M R F 1 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 7 0 851.43236 P21399 P21399 858 864 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.025249 54.525 By MS/MS 1 1.3847 1.2206 NaN 1 Median NaN NaN NaN 0 0 Median 1.3847 1.2206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1376600 578370 798260 0 0 0 1376600 578370 798260 0 0 0 0 0 0 0 0 0 0 0 0 32838 2090 34523 171630 173095 173095 1 TFQGHTNEVNAIK MCIHVCKLGQDRPIKTFQGHTNEVNAIKWD IKTFQGHTNEVNAIKWDPTGNLLASCSDDM K T F I K W 1 0 2 0 0 1 1 1 1 1 0 1 0 1 0 0 2 0 0 1 0 0 13 0 1457.7263 A0A0D9SF63;Q9BZK7;A0A1B0GVH3;A0A2R8YFW3;Q9BQ87;O60907 A0A0D9SF63 344 356 TBL1XR1;TBL1Y;TBL1X F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1Y;F-box-like/WD repeat-containing protein TBL1X yes no 3 0.046656 14.942 By matching By matching By MS/MS 1 1 1 1.1004 0.94473 13.102 3 Median 1.1848 1.1335 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87743 0.87907 NaN 1 0 Median 1.1004 0.94473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10918000 5304300 5613500 3082300 1462000 1620400 0 0 0 5279000 2701700 2577300 2556500 1140600 1415900 0 0 0 0 0 0 32839 265 34524 171631;171632;171633 173096 173096 1 TFQGKPIMAR TDAQQAFKYLREEVKTFQGKPIMARIKAIN REEVKTFQGKPIMARIKAINTFFAKNGYRL K T F A R I 1 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 10 1 1147.6172 Q71RC2;Q96J85;X6RLN4 Q71RC2 261 270 LARP4 La-related protein 4 yes no 2 0.045133 45.081 By MS/MS 1 0.83171 0.83431 NaN 1 Median NaN NaN NaN 0 0 Median 0.83171 0.83431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1110500 596960 513570 0 0 0 1110500 596960 513570 0 0 0 0 0 0 0 0 0 0 0 0 32840 3211 34525 171634 173097 173097 1 TFQMAEYLK YSPEDIIGNIFRVCKTFQMAEYLKLEFIKE IFRVCKTFQMAEYLKLEFIKEIGYTHMKIA K T F L K L 1 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 1 0 0 0 9 0 1129.5478 P35250;A0A087WVY3;H7C5P4 P35250 305 313 RFC2 Replication factor C subunit 2 yes no 2 0.016483 42.599 By MS/MS 1 1.0514 1.1138 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0514 1.1138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4911300 2509900 2401400 0 0 0 0 0 0 4911300 2509900 2401400 0 0 0 0 0 0 0 0 0 32841 2238 34526 171635 173098;173099 173099 2 TFQPGSWMPR FGKEEPSVAPSSTGKTFQPGSWMPRDGKSH SSTGKTFQPGSWMPRDGKSHNQ________ K T F P R D 0 1 0 0 0 1 0 1 0 0 0 0 1 1 2 1 1 1 0 0 0 0 10 0 1205.5652 Q8N183 Q8N183 153 162 NDUFAF2 Mimitin, mitochondrial yes yes 2 0.012353 60.436 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32842 3355 34527 171636 173100 173100 1 TFRDEEGKEYVR SLNSSATGRCLKIYRTFRDEEGKEYVRCET IYRTFRDEEGKEYVRCETVRKPAVIDAYVR R T F V R C 0 2 0 1 0 0 3 1 0 0 0 1 0 1 0 0 1 0 1 1 0 0 12 2 1527.7318 P21675;Q8IZX4;H0Y9L7 P21675 1170 1181 TAF1;TAF1L Transcription initiation factor TFIID subunit 1;Transcription initiation factor TFIID subunit 1-like yes no 3 0.0018614 40.377 By MS/MS By matching 1 1 0.96079 1.0541 18.259 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99808 1.1994 NaN 1 0 Median 0.92488 0.92644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2725100 1244300 1480800 0 0 0 0 0 0 2112200 945210 1167000 612870 299080 313790 0 0 0 0 0 0 32843 2091 34528 171637;171638 173101 173101 1 TFSDISNFGAHQR THTGERPYECTECGRTFSDISNFGAHQRTH GRTFSDISNFGAHQRTHRGEKPYRCTVCGK R T F Q R T 1 1 1 1 0 1 0 1 1 1 0 0 0 2 0 2 1 0 0 0 0 0 13 0 1478.6902 A0A0A0MRR1;Q5VV50;Q5VV52 A0A0A0MRR1 263 275 ZNF691 Zinc finger protein 691 yes no 3 0.00039894 53.252 By MS/MS 1 0.87086 0.86177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87086 0.86177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4457700 2384100 2073600 0 0 0 0 0 0 4457700 2384100 2073600 0 0 0 0 0 0 0 0 0 32844 168 34529 171639 173102 173102 1 TFSEILNR DLEVRSLETCMYDHKTFSEILNRVQKAVDD TCMYDHKTFSEILNRVQKAVDDLNLHSYSN K T F N R V 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 8 0 978.51345 Q14204 Q14204 873 880 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0017928 142.64 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.297 1.1524 20.056 5 Median 1.1873 1.1524 NaN 1 0 Median 1.9604 1.6515 NaN 1 0 Median 1.0724 1.1186 NaN 1 0 Median 1.5408 1.3518 25.278 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88043000 38898000 49145000 28372000 11922000 16451000 2089800 683250 1406600 48509000 22536000 25973000 9071900 3757000 5314900 0 0 0 0 0 0 32845 2865 34530 171640;171641;171642;171643;171644 173103;173104;173105;173106;173107;173108;173109;173110 173104 8 TFSFAIPLIEK SGKDLIAQARTGTGKTFSFAIPLIEKLHGE GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ K T F E K L 1 0 0 0 0 0 1 0 0 2 1 1 0 2 1 1 1 0 0 0 0 0 11 0 1264.7067 Q9NR30 Q9NR30 237 247 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00039595 70.552 By matching By matching By MS/MS By MS/MS By matching 3 3 2 2 2 1.0609 1.0691 18.7 12 Median 1.078 1.0887 11.027 3 0 Median 1.0172 0.88904 22.768 3 0 Median 1.0783 1.1675 2.9513 2 0 Median NaN NaN NaN 0 0 Median 1.0657 1.1058 4.4826 2 0 Median 1.0297 0.87334 0.25434 2 0 Median 60693000 28304000 32389000 5360700 2494600 2866100 7969300 3834800 4134500 32878000 15249000 17629000 0 0 0 13654000 6323600 7330200 831170 401290 429880 32846 4076 34531 171645;171646;171647;171648;171649;171650;171651;171652;171653;171654;171655;171656 173111;173112 173111 2 TFSGQTHGFVHR TQKLKEHCKVEYQIKTFSGQTHGFVHRKRE QIKTFSGQTHGFVHRKREDCSPADKPYIDE K T F H R K 0 1 0 0 0 1 0 2 2 0 0 0 0 2 0 1 2 0 0 1 0 0 12 0 1372.6636 Q96DG6 Q96DG6 206 217 CMBL Carboxymethylenebutenolidase homolog yes yes 2;3 3.6524E-06 111.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1 1.3625 1.2098 28.616 10 Median 1.146 1.0896 14.337 3 0 Median 1.7491 1.4795 8.4647 3 1 Plateau 1.0465 0.99666 5.6126 2 0 Median 2.7142 2.2439 NaN 1 1 Median 1.7743 1.7492 NaN 1 1 Median NaN NaN NaN 0 0 Median 82212000 35507000 46705000 48893000 21627000 27266000 20729000 7620000 13109000 8607300 4919800 3687600 1326700 390860 935860 2655900 949580 1706300 0 0 0 32847 3626 34532 171657;171658;171659;171660;171661;171662;171663;171664;171665;171666 173113;173114;173115;173116;173117;173118;173119;173120;173121;173122;173123;173124 173122 12 TFSGSLSHLGESSSYQGTGSVQFPGDQDLR PALTESLVQTLVKNRTFSGSLSHLGESSSY QGTGSVQFPGDQDLRFARVPLALHPVVGQP R T F L R F 0 1 0 2 0 3 1 5 1 0 3 0 0 2 1 7 2 0 1 1 0 0 30 0 3143.4432 Q9NYV4 Q9NYV4 1375 1404 CDK12 Cyclin-dependent kinase 12 yes yes 3 0.0060821 21.771 By matching By MS/MS 1 1 0.92289 0.91749 8.5095 2 Median NaN NaN NaN 0 0 Median 1.0951 0.97439 NaN 1 0 Median 0.77773 0.86391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2529600 1549800 979860 0 0 0 147770 68353 79417 2381900 1481400 900440 0 0 0 0 0 0 0 0 0 32848 4180 34533 171667;171668 173125 173125 1 TFSHELSDFGLESTAGEIPVVAIR LDAGHKLNFAVASRKTFSHELSDFGLESTA GLESTAGEIPVVAIRTAKGEKFVMQEEFSR K T F I R T 2 1 0 1 0 0 3 2 1 2 2 0 0 2 1 3 2 0 0 2 0 0 24 0 2574.2966 P30101 P30101 306 329 PDIA3 Protein disulfide-isomerase A3 yes yes 3 8.3962E-06 37.896 By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1.0667 0.90783 10.972 8 Median 0.88202 0.86607 1.7003 2 0 Median 1.0857 0.91092 9.8102 3 1 Median 1.017 1.0267 18.756 2 0 Median 1.0951 0.94548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41189000 19625000 21564000 7419600 3929100 3490500 30487000 14198000 16289000 2073800 958150 1115700 1208400 539930 668440 0 0 0 0 0 0 32849 2189 34534 171669;171670;171671;171672;171673;171674;171675;171676 173126;173127;173128;173129;173130;173131;173132;173133;173134;173135 173132 10 TFSLTEVR KKESGENPPPKLRRRTFSLTEVRGQVSESE PPKLRRRTFSLTEVRGQVSESEDSITKQIE R T F V R G 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 951.50255 O95239 O95239 799 806 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0035922 86.833 By MS/MS By MS/MS By matching 1 1 1 1.1832 1.1399 8.7218 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0454 1.1495 NaN 1 0 Median 1.1925 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1832 0.97122 NaN 1 0 Median 11939000 5197300 6741300 0 0 0 0 0 0 10357000 4494100 5863100 1321100 580670 740460 0 0 0 260300 122570 137730 32850 1757 34535 171677;171678;171679 173136;173137;173138 173136 3 TFSQSSHLVQHR THTGERPNACADCGKTFSQSSHLVQHRRIH CGKTFSQSSHLVQHRRIHTGEKPYACLECG K T F H R R 0 1 0 0 0 2 0 0 2 0 1 0 0 1 0 3 1 0 0 1 0 0 12 0 1425.7113 Q6DD87 Q6DD87 102 113 ZNF787 Zinc finger protein 787 yes yes 2;3 0.00095468 45.915 By MS/MS By MS/MS 3 2 1.2578 1.2714 15.499 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2578 1.2714 6.1522 3 0 Median 1.3333 1.142 25.492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6378100 2872700 3505400 0 0 0 0 0 0 4214800 1913500 2301300 2163300 959280 1204000 0 0 0 0 0 0 32851 3131 34536 171680;171681;171682;171683;171684 173139;173140;173141 173140 3 TFSSIPVSR FVFEPPPGVKANMLRTFSSIPVSRICKSPN KANMLRTFSSIPVSRICKSPNERARLYFLL R T F S R I 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 3 1 0 0 1 0 0 9 0 992.5291 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4160 4168 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0025939 85.676 By MS/MS By MS/MS By MS/MS 1 1 1 0.82362 0.84047 40.766 3 Plateau 0.75254 0.73138 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85442 0.89476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49236 0.40813 NaN 1 1 Median 58090000 32510000 25580000 23505000 12740000 10765000 0 0 0 29221000 16297000 12924000 0 0 0 0 0 0 5363800 3473200 1890600 32852 2865 34537 171685;171686;171687 173142;173143;173144 173143 3 TFSSLHVER TQCGFKLFTREAASRTFSSLHVERWAFDVE REAASRTFSSLHVERWAFDVELLYIAQFFK R T F E R W 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 9 0 1074.5458 Q9Y673 Q9Y673 249 257 ALG5 Dolichyl-phosphate beta-glucosyltransferase yes yes 2 0.0025104 71.501 By MS/MS 1 1.3388 1.1334 NaN 1 Median NaN NaN NaN 0 0 Median 1.3388 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1341000 541620 799390 0 0 0 1341000 541620 799390 0 0 0 0 0 0 0 0 0 0 0 0 32853 4479 34538 171688 173145;173146 173145 2 TFSVWYVPEVTGTHK HQEEAKVTANNDKNRTFSVWYVPEVTGTHK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF R T F H K V 0 0 0 0 0 0 1 1 1 0 0 1 0 1 1 1 3 1 1 3 0 0 15 0 1749.8726 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 341 355 FLNA Filamin-A no no 2;3 2.354E-09 101.95 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 4 0.86953 0.84624 12.144 15 Median 0.93934 0.93166 11.437 4 1 Median 0.83111 0.74251 5.5952 4 0 Median 0.82718 0.88966 11.919 3 0 Median 0.92539 0.84762 2.5541 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 392370000 206480000 185890000 250130000 129720000 120410000 112880000 62387000 50498000 27112000 13176000 13936000 2239800 1193700 1046100 0 0 0 0 0 0 32854 2088;3120 34539 171689;171690;171691;171692;171693;171694;171695;171696;171697;171698;171699;171700;171701;171702;171703;171704 173147;173148;173149;173150;173151;173152;173153;173154;173155;173156;173157;173158;173159;173160;173161;173162 173149 16 TFSWASVTSK PAPADIAQTVQEDLRTFSWASVTSKNLPPS QEDLRTFSWASVTSKNLPPSGAVPVTGIPP R T F S K N 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 3 2 1 0 1 0 0 10 0 1112.5502 Q13283 Q13283 248 257 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 0.00075444 74.173 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 3 1.1239 0.98421 10.842 7 Median 1.1154 1.0597 10.457 2 1 Median 1.1239 0.94079 NaN 1 0 Median 1.2075 1.1732 NaN 1 0 Median 1.1595 0.98451 6.6201 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68186000 30094000 38092000 37548000 15934000 21614000 12887000 6138600 6748000 12015000 5334400 6680200 5736500 2686300 3050200 0 0 0 0 0 0 32855 2803 34540 171705;171706;171707;171708;171709;171710;171711;171712 173163;173164;173165;173166;173167;173168 173166 6 TFSYAGFEMQPK ALEDSQLVAGVAFKKTFSYAGFEMQPKKYH FKKTFSYAGFEMQPKKYHNPKIALLNVELE K T F P K K 1 0 0 0 0 1 1 1 0 0 0 1 1 2 1 1 1 0 1 0 0 0 12 0 1404.6384 Q99832 Q99832 219 230 CCT7 T-complex protein 1 subunit eta yes yes 2 0.00014004 88.681 By MS/MS By matching By MS/MS By matching By matching By matching 3 3 2 3 1 1 1.0885 0.98751 32.086 13 Median 1.0481 0.97119 4.8576 3 2 Median 1.1629 1.0109 65.024 3 0 Median 1.1044 1.1488 3.935 2 0 Median 1.0569 0.98751 11.548 3 0 Median 1.5213 1.4579 NaN 1 0 Median 1.1306 0.96861 NaN 1 0 Median 151030000 72707000 78327000 117760000 58030000 59728000 12071000 5776000 6295200 14990000 6605100 8385200 4004200 1459600 2544600 1989600 727670 1261900 220910 108790 112120 32856 3771 34541;34542 171713;171714;171715;171716;171717;171718;171719;171720;171721;171722;171723;171724;171725 173169;173170;173171;173172;173173;173174 173174 1825 6 TFTAWCNSHLR RDLLLDPAWEKQQRKTFTAWCNSHLRKAGT QQRKTFTAWCNSHLRKAGTQIENIDEDFRD K T F L R K 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 1 2 1 0 0 0 0 11 0 1391.6405 O43707;F5GXS2;K7EP19;P12814;P35609;A0A494C1A0;G3V2N5;Q08043;A0A494C033;A0A494C166;A0A494C0Q3 O43707 55 65 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 no no 2 0.005015 46.891 By matching By MS/MS 1 1 1.2206 1.1393 67.951 2 Median 1.8055 1.8421 NaN 1 0 Median 0.82517 0.70465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5126600 2447200 2679400 2049600 881330 1168200 3077000 1565900 1511100 0 0 0 0 0 0 0 0 0 0 0 0 32857 1585;1983 34543 171726;171727 173175 173175 1 TFTDHVMLFTQTK REGDREAIVAALLTRTFTDHVMLFTQTKKQ TRTFTDHVMLFTQTKKQAHRMHILLGLMGL R T F T K K 0 0 0 1 0 1 0 0 1 0 1 1 1 2 0 0 4 0 0 1 0 0 13 0 1567.7705 B7Z6D5;Q96GQ7 B7Z6D5 430 442 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 3 0.0020023 37.613 By MS/MS By matching 2 1 1.2492 1.283 26.991 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99776 1.0309 30.936 2 0 Median 1.5982 1.3557 NaN 1 0 Median 8117400 3370000 4747400 0 0 0 0 0 0 0 0 0 0 0 0 7901400 3283200 4618300 215950 86819 129140 32858 635 34544 171728;171729;171730 173176;173177 173177 2 TFTEMDSHEEK VALGYRENVNLAQIRTFTEMDSHEEKVFRA AQIRTFTEMDSHEEKVFRAVRETQEREAKA R T F E K V 0 0 0 1 0 0 3 0 1 0 0 1 1 1 0 1 2 0 0 0 0 0 11 0 1352.5554 B0YIW6;P48444;Q6P1Q5 B0YIW6 173 183 ARCN1 Coatomer subunit delta yes no 2;3 0.00015337 82.749 By MS/MS By MS/MS 2 4 0.99882 0.96079 20.395 6 Median 0.99882 0.96079 3.4771 2 0 Median 0.96731 0.84557 23.845 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11168000 5335300 5833100 6588600 3128400 3460200 4579800 2206900 2372900 0 0 0 0 0 0 0 0 0 0 0 0 32859 561 34545 171731;171732;171733;171734;171735;171736 173178;173179;173180;173181;173182;173183 173180 6 TFTEMDSHEEKVFR VALGYRENVNLAQIRTFTEMDSHEEKVFRA RTFTEMDSHEEKVFRAVRETQEREAKAEMR R T F F R A 0 1 0 1 0 0 3 0 1 0 0 1 1 2 0 1 2 0 0 1 0 0 14 1 1754.7934 B0YIW6;P48444;Q6P1Q5 B0YIW6 173 186 ARCN1 Coatomer subunit delta yes no 3 0.016162 78.486 By MS/MS 1 1.3213 1.3261 NaN 1 Median 1.3213 1.3261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8410000 3716900 4693100 8410000 3716900 4693100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32860 561 34546 171737 173184 173184 0 TFTMEILR RLEQDQTSAQLQVQKTFTMEILRHKDIIDD AQLQVQKTFTMEILRHKDIIDDLVKSGHKI K T F L R H 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 0 2 0 0 0 0 0 8 0 1009.5267 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3787 3794 DST Dystonin yes no 2 0.038078 56.547 By MS/MS 1 1.1322 1.2428 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1322 1.2428 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3006900 1410600 1596300 0 0 0 0 0 0 3006900 1410600 1596300 0 0 0 0 0 0 0 0 0 32861 934 34547 171738 173185 173185 1 TFTTQETITNAETAK AQLNPESSLFIIASKTFTTQETITNAETAK TFTTQETITNAETAKEWFLQAAKDPSAVAK K T F A K E 2 0 1 0 0 1 2 0 0 1 0 1 0 1 0 0 6 0 0 0 0 0 15 0 1654.805 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;CON__Q3ZBD7 P06744 212 226 GPI Glucose-6-phosphate isomerase yes no 2 1.98E-26 196.11 By MS/MS By MS/MS 3 3 1.0428 0.92709 20.645 6 Median 1.0319 0.95121 13.222 3 0 Median 1.0799 0.90358 26.959 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 162950000 77388000 85563000 123570000 59463000 64109000 39379000 17925000 21454000 0 0 0 0 0 0 0 0 0 0 0 0 32862 1875 34548 171739;171740;171741;171742;171743;171744 173186;173187;173188;173189;173190;173191;173192;173193;173194 173186 9 TFVDFFSQCLHEEYR GMLPVPLLTIYSATKTFVDFFSQCLHEEYR TFVDFFSQCLHEEYRSKGVFVQSVLPYFVA K T F Y R S 0 1 0 1 1 1 2 0 1 0 1 0 0 3 0 1 1 0 1 1 0 0 15 0 1976.8727 Q53GQ0;A0A1B0GV93 Q53GQ0 207 221 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 3 0.00024123 45.084 By MS/MS 1 1.3334 1.123 NaN 1 Median NaN NaN NaN 0 0 Median 1.3334 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1968100 828310 1139800 0 0 0 1968100 828310 1139800 0 0 0 0 0 0 0 0 0 0 0 0 32863 3030 34549 171745 173195;173196 173195 2 TFVEESIYNEFLER ALFFNMGQCCCAGSRTFVEESIYNEFLERT RTFVEESIYNEFLERTVEKAKQRKVGNPFE R T F E R T 0 1 1 0 0 0 4 0 0 1 1 0 0 2 0 1 1 0 1 1 0 0 14 0 1774.8414 P30837 P30837 325 338 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 4.3531E-05 93.821 By MS/MS 1 1.4141 1.2308 NaN 1 Median NaN NaN NaN 0 0 Median 1.4141 1.2308 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1324300 466270 858040 0 0 0 1324300 466270 858040 0 0 0 0 0 0 0 0 0 0 0 0 32864 2199 34550 171746 173197 173197 1 TFVEKYEK KTEEDSEEVREQKHKTFVEKYEKQIKHFGM VREQKHKTFVEKYEKQIKHFGMLRRWDDSQ K T F E K Q 0 0 0 0 0 0 2 0 0 0 0 2 0 1 0 0 1 0 1 1 0 0 8 1 1042.5335 Q16543;K7EKQ2 Q16543 150 157 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.039139 63.565 By MS/MS 1 1.1675 1.1182 NaN 1 Median 1.1675 1.1182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7472700 3311200 4161500 7472700 3311200 4161500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32865 2988 34551 171747 173198 173198 1 TFVHVVPAKPEGTFK VDLITRLPKGAVLYKTFVHVVPAKPEGTFK TFVHVVPAKPEGTFKLVAML__________ K T F F K L 1 0 0 0 0 0 1 1 1 0 0 2 0 2 2 0 2 0 0 3 0 0 15 1 1655.9035 H7C5U8;Q9P0M9;D6RAN8 H7C5U8 117 131 MRPL27 39S ribosomal protein L27, mitochondrial yes no 2;3 6.7822E-08 97.797 By MS/MS By MS/MS By MS/MS 4 1 1 1.0455 1.0447 20.193 5 Median 1.0455 1.0447 15.192 3 2 Median 1.2454 1.0796 NaN 1 0 Median 0.6827 0.69002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69443000 32689000 36754000 21862000 11215000 10647000 34197000 13806000 20392000 13383000 7668600 5714500 0 0 0 0 0 0 0 0 0 32866 1267 34552 171748;171749;171750;171751;171752;171753 173199;173200;173201;173202;173203;173204;173205;173206;173207 173205 9 TFVLEVMGR EVVDAIMTTAQSHQRTFVLEVMGRHCGYLA AQSHQRTFVLEVMGRHCGYLALVSALACGA R T F G R H 0 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 2 0 0 9 0 1050.5532 A0A2R8Y891;P08237;F8VZI0;Q01813;Q5VSR5;P17858 Q01813 211 219 PFKM;PFKP;PFKL ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type no no 2 0.011805 62.107 By MS/MS 1 1.819 1.7203 NaN 1 Median 1.819 1.7203 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24421000 8665800 15755000 24421000 8665800 15755000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32867 2692;2047;390 34553 171754 173208 173208 1 TFVNITPAEVGVLVGK GYKDSPSVWAAVPGKTFVNITPAEVGVLVG FVNITPAEVGVLVGKDRSSFYVNGLTLGGQ K T F G K D 1 0 1 0 0 0 1 2 0 1 1 1 0 1 1 0 2 0 0 4 0 0 16 0 1642.9294 P07737;I3L3D5 P07737 39 54 PFN1 Profilin-1 yes no 2 5.2754E-10 105.65 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 1 1 1 1.0254 0.86148 13.672 9 Median 0.91483 0.84766 2.2871 2 0 Median 1.0264 0.84066 3.8513 4 2 Median 0.97529 0.92763 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1741 1.2541 NaN 1 0 Median 1.2467 1.021 NaN 1 0 Median 238970000 118750000 120220000 13842000 7183900 6658200 196520000 97401000 99124000 26082000 13025000 13057000 0 0 0 480420 242380 238040 2036300 895070 1141200 32868 1889 34554 171755;171756;171757;171758;171759;171760;171761;171762;171763 173209;173210;173211;173212;173213;173214;173215;173216;173217 173212 9 TFVNITPAEVGVLVGKDR GYKDSPSVWAAVPGKTFVNITPAEVGVLVG NITPAEVGVLVGKDRSSFYVNGLTLGGQKC K T F D R S 1 1 1 1 0 0 1 2 0 1 1 1 0 1 1 0 2 0 0 4 0 0 18 1 1914.0575 P07737;I3L3D5 P07737 39 56 PFN1 Profilin-1 yes no 2;3 3.528E-10 98.531 By MS/MS By MS/MS By MS/MS 3 2 2 0.98345 0.97411 11.324 7 Median 0.99339 0.97411 14.96 3 0 Median 1.0075 0.88951 11.737 2 0 Median 0.98075 1.0167 0.82387 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58740000 30595000 28145000 20912000 12258000 8654200 4351700 2017400 2334300 33477000 16320000 17157000 0 0 0 0 0 0 0 0 0 32869 1889 34555 171764;171765;171766;171767;171768;171769;171770 173218;173219;173220;173221;173222;173223;173224;173225;173226;173227;173228 173226 11 TFVQEDIYDEFVER ALFFNQGQCCCAGSRTFVQEDIYDEFVERS RTFVQEDIYDEFVERSVARAKSRVVGNPFD R T F E R S 0 1 0 2 0 1 3 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 14 0 1788.8206 P05091;S4R3S4 P05091 325 338 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00014416 80.596 By MS/MS By MS/MS By matching 1 1 1 0.98198 0.97653 12.825 3 Median 0.98198 0.97653 NaN 1 0 Median 1.3696 1.1924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89793 0.93868 NaN 1 0 Median NaN NaN NaN 0 0 Median 4456200 2150800 2305300 1743800 843640 900200 1266800 547700 719100 0 0 0 0 0 0 1445500 759500 686020 0 0 0 32870 1860 34556 171771;171772;171773 173229;173230 173230 2 TFVQELER HNYTQDRLQRLFHERTFVQELERYKEENIE QRLFHERTFVQELERYKEENIELAFDDLEP R T F E R Y 0 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 1020.524 Q92614;A0A0D9SFK2 Q92614 827 834 MYO18A Unconventional myosin-XVIIIa yes no 2 0.0035841 87.323 By matching By MS/MS By MS/MS 1 1 1 0.98962 1.0104 7.3098 3 Plateau NaN NaN NaN 0 0 Median 1.1302 0.93801 NaN 1 0 Median 0.91593 1.0104 NaN 1 0 Median 0.98962 0.87299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6900300 3296500 3603800 0 0 0 1383700 557360 826300 4725700 2382400 2343300 790970 356830 434140 0 0 0 0 0 0 32871 267 34557 171774;171775;171776 173231;173232 173231 2 TFVSGACDASIK HSGDVMSLSLAPDGRTFVSGACDASIKLWD DGRTFVSGACDASIKLWDVRDSMCRQTFIG R T F I K L 2 0 0 1 1 0 0 1 0 1 0 1 0 1 0 2 1 0 0 1 0 0 12 0 1254.5914 E7EP32;P62879;C9JIS1;C9JXA5 E7EP32 154 165 GNB2 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 yes no 2 0.00032936 81.865 By MS/MS By matching 1 1 1.1314 1.0207 1.9323 2 Median NaN NaN NaN 0 0 Median 1.2308 1.0347 NaN 1 0 Median 1.0401 1.0068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11531000 5334400 6197000 0 0 0 9990300 4642000 5348300 1541100 692410 848670 0 0 0 0 0 0 0 0 0 32872 867 34558 171777;171778 173233;173234 173233 2 TFVVQGFGNVGLHSMR SYMSILGMTPGFGDKTFVVQGFGNVGLHSM FVVQGFGNVGLHSMRYLHRFGAKCIAVGES K T F M R Y 0 1 1 0 0 1 0 3 1 0 1 0 1 2 0 1 1 0 0 3 0 0 16 0 1747.8828 P00367;P49448 P00367 303 318 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2;3 9.6987E-10 116.54 By MS/MS By matching By MS/MS 2 1 1 1.1351 1.0997 11.297 4 Median 1.1351 1.0997 1.374 2 0 Median 1.5602 1.3404 NaN 1 0 Median 0.99878 1.0352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25611000 11872000 13738000 18881000 8983900 9897200 2471800 940810 1531000 4257800 1947700 2310100 0 0 0 0 0 0 0 0 0 32873 1814 34559 171779;171780;171781;171782 173235;173236;173237;173238 173237 3 TFYEDEMASHLDSK MVERIQFVCSLCKYRTFYEDEMASHLDSKF RTFYEDEMASHLDSKFHKEHFKYVGTKLPK R T F S K F 1 0 0 2 0 0 2 0 1 0 1 1 1 1 0 2 1 0 1 0 0 0 14 0 1671.7087 Q9ULX6 Q9ULX6 398 411 AKAP8L A-kinase anchor protein 8-like yes yes 3 0.017271 23.008 By matching By matching By matching By MS/MS 1 1 1 1 0.80267 0.84362 19.804 4 Median 1.0141 0.9971 NaN 1 0 Median 0.71484 0.64451 NaN 1 0 Median 0.70248 0.76362 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90128 0.932 NaN 1 0 Median NaN NaN NaN 0 0 Median 8683000 4215000 4468000 2160300 1033300 1126900 465020 191750 273270 2717400 1532900 1184500 0 0 0 3340300 1457000 1883300 0 0 0 32874 4331 34560 171783;171784;171785;171786 173239 173239 1 TFYGLHQDFPSVVLVGLGK TLNISGPPLKAGKTRTFYGLHQDFPSVVLV LHQDFPSVVLVGLGKKAAGIDEQENWHEGK R T F G K K 0 0 0 1 0 1 0 3 1 0 3 1 0 2 1 1 1 0 1 3 0 0 19 0 2076.1044 P28838 P28838 85 103 LAP3 Cytosol aminopeptidase yes yes 2;3 0.013277 21.251 By MS/MS By matching 2 1 1.1188 0.9926 9.159 3 Median 1.0882 1.0631 9.702 2 0 Median 1.1188 0.95702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5605600 2722900 2882800 2836700 1436700 1400000 2769000 1286200 1482800 0 0 0 0 0 0 0 0 0 0 0 0 32875 2167 34561 171787;171788;171789 173240;173241;173242 173241 3 TFYLIRPASANISLYER SGGASAWYHVLKGEKTFYLIRPASANISLY YLIRPASANISLYERWRSASNHSEMFFADQ K T F E R W 2 2 1 0 0 0 1 0 0 2 2 0 0 1 1 2 1 0 2 0 0 0 17 1 2013.0684 O75151 O75151 267 283 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.06529 9.7492 By MS/MS 1 0.82683 1.0056 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82683 1.0056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2071900 1087700 984220 0 0 0 0 0 0 2071900 1087700 984220 0 0 0 0 0 0 0 0 0 32876 1649 34562 171790 173243 173243 1 TFYNQAIMSSK PRQADVFPDRDHFGRTFYNQAIMSSKNIAQ HFGRTFYNQAIMSSKNIAQIAVVMGSCTAG R T F S K N 1 0 1 0 0 1 0 0 0 1 0 1 1 1 0 2 1 0 1 0 0 0 11 0 1288.6122 Q9HCC0;A0A0G2JM88;D6R9R1;D6RDF7 Q9HCC0 194 204 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes no 2 0.004632 68.893 By MS/MS 2 0.81025 0.76617 4.3242 2 Median 0.81025 0.76617 4.3242 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17693000 10831000 6862600 17693000 10831000 6862600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32877 4027 34563 171791;171792 173244;173245 173244 2 TFYQMYDK CYYTFDGKYEAKQLRTFYQMYDKGLVYRSY YEAKQLRTFYQMYDKGLVYRSYKPVFWSPS R T F D K G 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 1 0 2 0 0 0 8 0 1094.4743 Q9NSE4 Q9NSE4 226 233 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.013566 52.786 By MS/MS By MS/MS 1 1 1.1724 1.074 29.003 2 Median 0.90162 0.87485 NaN 1 0 Median 1.5245 1.3185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11366000 5644000 5722200 7899700 4248500 3651200 3466500 1395500 2071000 0 0 0 0 0 0 0 0 0 0 0 0 32878 4103 34564 171793;171794 173246;173247 173246 2 TFYYLEQLILK WKAVIQVRQKTLHKKTFYYLEQLILKYGMH LHKKTFYYLEQLILKYGMHQNTLRIKEIHD K T F L K Y 0 0 0 0 0 1 1 0 0 1 3 1 0 1 0 0 1 0 2 0 0 0 11 0 1429.7857 C9JA08;Q96D46;C9J0B9 C9JA08 168 178 NMD3 60S ribosomal export protein NMD3 yes no 2 0.013325 37.476 By MS/MS By matching 1 1 1.487 1.3718 27.634 2 Median NaN NaN NaN 0 0 Median 1.3223 1.1283 NaN 1 0 Median 1.6723 1.6679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3629700 1237900 2391800 0 0 0 3400800 1162500 2238300 228850 75416 153440 0 0 0 0 0 0 0 0 0 32879 683 34565 171795;171796 173248 173248 1 TGAAPIIDVVR TLVSEQTRVNAAKNKTGAAPIIDVVRSVS_ AKNKTGAAPIIDVVRSVS____________ K T G V R S 2 1 0 1 0 0 0 1 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1110.6397 E9PLL6;P46776;E9PJD9;E9PLX7 E9PLL6 95 105 RPL27A 60S ribosomal protein L27a yes no 2 0.00014645 112.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 2 4 6 1.0701 0.93779 12.813 20 Median 0.96874 0.88216 4.9495 3 0 Median 1.0296 0.85204 13.085 3 0 Median 1.0302 1.0159 18.101 2 0 Median 1.296 1.048 4.1116 2 0 Median 1.0365 1.0724 12.577 4 0 Median 1.1361 0.89877 8.3215 6 0 Median 945810000 462300000 483510000 613020000 304150000 308870000 101000000 49207000 51791000 72824000 35532000 37292000 16407000 6925500 9482000 33352000 16842000 16510000 109210000 49645000 59566000 32880 961 34566 171797;171798;171799;171800;171801;171802;171803;171804;171805;171806;171807;171808;171809;171810;171811;171812;171813;171814;171815;171816 173249;173250;173251;173252;173253;173254;173255;173256;173257;173258;173259;173260;173261;173262;173263;173264;173265;173266;173267;173268;173269;173270;173271;173272;173273;173274;173275;173276 173253 28 TGADTTAAGPLFQQRPYPSPGAVLR RGTWSTGLPKRNEAKTGADTTAAGPLFQQR LFQQRPYPSPGAVLRANAEASRTKQQD___ K T G L R A 4 2 0 1 0 2 0 3 0 0 2 0 0 1 4 1 3 0 1 1 0 0 25 1 2570.3241 O60828;H7C053 O60828 229 253 PQBP1 Polyglutamine-binding protein 1 yes no 3 1.7272E-21 91.729 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.50612 0.54022 7.1171 5 Median 0.55393 0.59634 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50449 0.52656 NaN 1 1 Median 0.65719 0.61328 NaN 1 0 Median 0.49748 0.53525 1.3077 2 1 Median NaN NaN NaN 0 0 Median 34710000 23120000 11590000 8201600 5394100 2807500 0 0 0 13428000 9386900 4040900 1725400 979280 746170 11355000 7359900 3995500 0 0 0 32881 1633 34567 171817;171818;171819;171820;171821 173277;173278;173279;173280;173281;173282;173283;173284;173285 173281 9 TGAEGAVLDEAK KLYLVDLAGSEKVSKTGAEGAVLDEAKNIN VSKTGAEGAVLDEAKNINKSLSALGNVISA K T G A K N 3 0 0 1 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 0 1159.5721 O60282;A0A0G2JMZ6;P33176 P33176 241 252 KIF5C;KIF5B Kinesin heavy chain isoform 5C;Kinesin-1 heavy chain no no 2 2.1547E-11 118.4 By MS/MS By MS/MS 2 2 1.3289 1.1173 56.599 3 Plateau 1.137 1.098 NaN 1 1 Median 0.79181 0.68144 69.925 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51671000 22495000 29175000 15659000 7290500 8368300 36012000 15205000 20807000 0 0 0 0 0 0 0 0 0 0 0 0 32882 2221;1609 34568 171822;171823;171824;171825 173286;173287;173288;173289 173287 4 TGAESISLLELCR RTQQMLHGLQRALAKTGAESISLLELCRNT AKTGAESISLLELCRNTNRKQAAAKFYSFL K T G C R N 1 1 0 0 1 0 2 1 0 1 3 0 0 0 0 2 1 0 0 0 0 0 13 0 1447.7341 O60216;E5RFZ5;E5RI01;E5RG18 O60216 574 586 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.0012451 70.977 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32883 1603 34569 171826 173290 173290 1 TGAHLELSLAK GEGEQAKICLEIMQRTGAHLELSLAKDQGL IMQRTGAHLELSLAKDQGLSIMVSGKLDAV R T G A K D 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1138.6346 Q00341;A0A024R4E5;H7C0A4;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7 Q00341 111 121 HDLBP Vigilin yes no 2 0.00048871 68.657 By MS/MS By matching By MS/MS 1 1 1 1.1788 1.1374 33.458 3 Median 1.1788 1.1374 NaN 1 0 Median 2.1564 1.8386 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0607 0.96594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21368000 9227700 12140000 14966000 7021000 7945200 5377100 1776500 3600600 0 0 0 1024800 430200 594600 0 0 0 0 0 0 32884 4 34570 171827;171828;171829 173291;173292 173291 2 TGAIVDVPVGEELLGR FGNDKLIKEGDIVKRTGAIVDVPVGEELLG GAIVDVPVGEELLGRVVDALGNAIDGKGPI R T G G R V 1 1 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 16 0 1623.8832 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 134 149 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 2.0728E-11 149.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 1 4 1.0468 0.96714 21.452 13 Median 0.92978 0.86031 6.7612 3 1 Median 1.1238 0.93694 11.481 3 0 Median 0.88016 0.87541 0.87376 2 0 Median 1.3387 1.1459 NaN 1 0 Median 1.6823 1.6943 NaN 1 0 Median 1.5283 1.3242 16.734 3 0 Median 358530000 171000000 187520000 93512000 47532000 45980000 220040000 102780000 117260000 26414000 13502000 12912000 10437000 4479400 5958000 2331900 646310 1685600 5791100 2061100 3730000 32885 2135 34571 171830;171831;171832;171833;171834;171835;171836;171837;171838;171839;171840;171841;171842;171843;171844 173293;173294;173295;173296;173297;173298;173299;173300;173301;173302;173303;173304;173305;173306;173307;173308;173309;173310 173305 18 TGALLLQGFIQDR QPRGGGPTSSEQIMKTGALLLQGFIQDRAG MKTGALLLQGFIQDRAGRMGGEAPELALDP K T G D R A 1 1 0 1 0 2 0 2 0 1 3 0 0 1 0 0 1 0 0 0 0 0 13 0 1430.7882 Q07812 Q07812 22 34 BAX Apoptosis regulator BAX yes yes 2 8.9483E-05 85.377 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2864 1.0523 13.402 5 Median 0.95635 0.91222 4.5068 2 0 Median 1.3523 1.1217 NaN 1 0 Median 1.3183 1.2352 NaN 1 0 Median 1.2864 1.0523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23003000 11152000 11852000 16635000 8431900 8203400 4598000 1984400 2613600 1456400 581970 874440 313650 153460 160190 0 0 0 0 0 0 32886 2732 34572 171845;171846;171847;171848;171849 173311;173312;173313;173314;173315;173316;173317 173312 7 TGAPQYGSYGTAPVNLNIK DDDEDDVHVTIGDIKTGAPQYGSYGTAPVN QYGSYGTAPVNLNIKTGGRVYGTTGTKVKG K T G I K T 2 0 2 0 0 1 0 3 0 1 1 1 0 0 2 1 2 0 2 1 0 0 19 0 1949.9847 Q6UN15;A0A0B4J203 Q6UN15 105 123 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes no 2;3 4.4653E-25 178.15 By MS/MS By matching By MS/MS 3 3 2 0.6783 0.68344 15.611 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70712 0.69413 7.0407 3 0 Plateau 0.91299 0.80188 15.29 3 0 Median 0.61504 0.61213 6.9358 2 0 Median NaN NaN NaN 0 0 Median 74592000 43671000 30920000 0 0 0 0 0 0 69601000 40347000 29254000 465200 207080 258120 4525100 3116900 1408200 0 0 0 32887 3185 34573 171850;171851;171852;171853;171854;171855;171856;171857 173318;173319;173320;173321;173322;173323 173319 6 TGASFQQAQEEFSQGIFSSR LSVFLLQRVHSLYRRTGASFQQAQEEFSQG QQAQEEFSQGIFSSRTFHRAASSAAQGAFQ R T G S R T 2 1 0 0 0 4 2 2 0 1 0 0 0 3 0 4 1 0 0 0 0 0 20 0 2204.0134 O15127 O15127 293 312 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 2;3 2.6305E-14 108.71 By MS/MS 5 1.0553 1.0605 10.288 5 Median 1.0553 1.0605 10.288 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16965000 7671700 9292800 16965000 7671700 9292800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32888 1523 34574 171858;171859;171860;171861;171862 173324;173325;173326;173327 173325 4 TGASWTDNIMAQK EAGTVTKCNFTGDGKTGASWTDNIMAQKCS GKTGASWTDNIMAQKCSKGAAAEIREQGDG K T G Q K C 2 0 1 1 0 1 0 1 0 1 0 1 1 0 0 1 2 1 0 0 0 0 13 0 1421.6609 A0A0A6YYH1;Q7Z6K5;H0YMP5;H0YL03;H0YMK0;H0YL85 A0A0A6YYH1 191 203 C15orf38-AP3S2;ARPIN Arpin yes no 2 5.7858E-05 86.898 By MS/MS 1 0.72237 0.67232 NaN 1 Median 0.72237 0.67232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16483000 9918200 6564400 16483000 9918200 6564400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32889 204 34575 171863 173328;173329 173328 2 TGAYQYTIR ITLYPSILTFPWQPKTGAYQYTIRAHGGSG FPWQPKTGAYQYTIRAHGGSGNFSWSSSSH K T G I R A 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 2 0 2 0 0 0 9 0 1071.5349 Q8TEM1 Q8TEM1 469 477 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 6.0343E-09 135.83 By matching By MS/MS By MS/MS By MS/MS 2 2 2 2 1.9327 1.5809 142.88 6 Median NaN NaN NaN 0 0 Median 1.9508 1.6066 34.229 2 0 Median 0.053141 0.059204 NaN 1 0 Median 0.41387 0.47363 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6651 2.2052 15.114 2 0 Median 25349000 15923000 9426100 0 0 0 10991000 4138300 6853100 11286000 10792000 493930 651600 385530 266070 0 0 0 2419300 606340 1813000 32890 3477 34576 171864;171865;171866;171867;171868;171869;171870;171871 173330;173331;173332 173330 3 TGDEKDVSV EEAGPGDPLLEAVPKTGDEKDVSV______ LEAVPKTGDEKDVSV_______________ K T G S V - 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 2 0 0 9 1 948.44001 Q16543;K7EL68 Q16543 370 378 CDC37 Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed yes no 2 0.011747 71.692 By matching By MS/MS 1 1 1.0649 0.94514 13.476 2 Median 1.1226 1.0396 NaN 1 0 Median 1.0103 0.85923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18462000 9043300 9418700 12821000 6295100 6525500 5641300 2748200 2893200 0 0 0 0 0 0 0 0 0 0 0 0 32891 2988 34577 171872;171873 173333;173334 173334 2 TGDFQLHTNVNDGTEFGGSIYQK AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE NVNDGTEFGGSIYQKVCEDLDTSVNLAWTS R T G Q K V 0 0 2 2 0 2 1 4 1 1 1 1 0 2 0 1 3 0 1 1 0 0 23 0 2527.1615 A0A0A0MR02;P45880 A0A0A0MR02 186 208 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 3 4.0202E-16 68.369 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 3 1.2135 1.042 10.883 10 Median 0.99594 0.95072 7.1105 2 2 Median 1.3605 1.1533 9.9334 2 0 Median 0.99013 0.95274 NaN 1 0 Median 1.3787 1.1639 NaN 1 0 Median 1.1708 1.1604 NaN 1 0 Median 1.2737 1.0099 11.245 3 0 Median 36563000 17094000 19469000 10246000 5101600 5144000 10231000 3993500 6237500 10759000 5678500 5080700 188410 73925 114490 2991700 1385100 1606600 2146600 861310 1285300 32892 151 34578 171874;171875;171876;171877;171878;171879;171880;171881;171882;171883 173335;173336;173337;173338;173339;173340 173337 6 TGDKGFSSTFTGER QPSSKTPRIPKIYTKTGDKGFSSTFTGERR KTGDKGFSSTFTGERRPKDDQVFEAVGTTD K T G E R R 0 1 0 1 0 0 1 3 0 0 0 1 0 2 0 2 3 0 0 0 0 0 14 1 1488.6845 Q96EY8;F5H4Z7;A0A087X114;S4R3Z1 Q96EY8 62 75 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 2;3 0.00046813 79.82 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.7125 1.5159 39.119 3 Median 0.82823 0.86931 NaN 1 0 Median 1.9845 1.849 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7125 1.5159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12037000 5009800 7026800 4477800 2418900 2058900 2929700 945920 1983800 0 0 0 4629100 1644900 2984100 0 0 0 0 0 0 32893 3645 34579 171884;171885;171886;171887 173341;173342 173341 2 TGDLGDINAEQLPGR KAFEKELSHATIDSKTGDLGDINAEQLPGR TGDLGDINAEQLPGREHLNEPGTREGQTRL K T G G R E 1 1 1 2 0 1 1 3 0 1 2 0 0 0 1 0 1 0 0 0 0 0 15 0 1554.7638 Q9Y263;E5RIM3 Q9Y263 326 340 PLAA Phospholipase A-2-activating protein yes no 2 0.00016426 76.655 By MS/MS 2 0.99788 0.8635 1.8432 2 Median NaN NaN NaN 0 0 Median 0.99788 0.8635 1.8432 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4355100 2340300 2014900 0 0 0 4355100 2340300 2014900 0 0 0 0 0 0 0 0 0 0 0 0 32894 4374 34580 171888;171889 173343;173344 173343 2 TGDLGDINAEQLPGREHLNEPGTR KAFEKELSHATIDSKTGDLGDINAEQLPGR EQLPGREHLNEPGTREGQTRLIRDGEKVEA K T G T R E 1 2 2 2 0 1 3 4 1 1 3 0 0 0 2 0 2 0 0 0 0 0 24 1 2588.2579 Q9Y263;E5RIM3 Q9Y263 326 349 PLAA Phospholipase A-2-activating protein yes no 4 1.8288E-12 60.278 By MS/MS 1 0.74729 0.81208 NaN 1 Median 0.74729 0.81208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18222000 9901500 8320400 18222000 9901500 8320400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32895 4374 34581 171890 173345 173345 1 TGDPQETLR RPSLSLGTITDEEMKTGDPQETLRRASMQP TDEEMKTGDPQETLRRASMQPIQIAEGTGI K T G L R R 0 1 0 1 0 1 1 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 9 0 1015.4934 A0A087WY61;Q14980 Q14980 1958 1966 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.046568 31.934 By matching By matching By MS/MS By matching 1 1 1 1 0.89293 0.85283 19.352 4 Median NaN NaN NaN 0 0 Median 0.74675 0.65975 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87663 0.76491 NaN 1 0 Median 0.90954 0.95084 NaN 1 0 Median 1.2001 0.9995 NaN 1 0 Median 2650700 1451900 1198900 0 0 0 437510 232440 205080 0 0 0 218360 136740 81624 1484300 833930 650390 510540 248760 261780 32896 2905;77 34582 171891;171892;171893;171894 173346 173346 1 TGEADREVSEISIVDIANKR EKLSSQITLLEAQNRTGEADREVSEISIVD REVSEISIVDIANKRSSSAEESGQDVLENT R T G K R S 2 2 1 2 0 0 3 1 0 3 0 1 0 0 0 2 1 0 0 2 0 0 20 2 2201.1288 Q14789;E7EU81;H0Y867 Q14789 517 536 GOLGB1 Golgin subfamily B member 1 yes no 3 2.2592E-14 85.231 By MS/MS 1 1.4516 1.4003 NaN 1 Median 1.4516 1.4003 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24630000 9001500 15628000 24630000 9001500 15628000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32897 2900 34583 171895 173347 173347 1 TGEAETITSHYLFALGVYR LESVAILPQLFMVSKTGEAETITSHYLFAL ETITSHYLFALGVYRTLYLFNWIWRYHFEG K T G Y R T 2 1 0 0 0 0 2 2 1 1 2 0 0 1 0 1 3 0 2 1 0 0 19 0 2127.0637 P24390 P24390 141 159 KDELR1 ER lumen protein-retaining receptor 1 yes yes 3 2.455E-07 60.317 By MS/MS 1 1.2772 1.084 NaN 1 Median NaN NaN NaN 0 0 Median 1.2772 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3822600 1605300 2217300 0 0 0 3822600 1605300 2217300 0 0 0 0 0 0 0 0 0 0 0 0 32898 2122 34584 171896 173348 173348 1 TGEAIVDAALSALR FGSNKNRPEDYQGGRTGEAIVDAALSALRQ RTGEAIVDAALSALRQLVKDRLGGRSGGYS R T G L R Q 4 1 0 1 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1385.7514 Q15084 Q15084 119 132 PDIA6 Protein disulfide-isomerase A6 yes yes 2 6.5451E-08 128.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 1 1 1.2089 1.1187 57.757 10 Median 1.0883 1.0713 6.3593 2 0 Median 1.2275 1.0774 77.779 5 0 Median 1.1905 1.178 NaN 1 0 Median 1.4395 1.2581 NaN 1 0 Median 1.4269 1.4397 NaN 1 1 Median NaN NaN NaN 0 0 Median 161010000 68078000 92932000 20220000 9097900 11122000 129840000 54051000 75785000 9028400 4133400 4895000 501590 209460 292130 1424900 586710 838150 0 0 0 32899 2927 34585 171897;171898;171899;171900;171901;171902;171903;171904;171905;171906 173349;173350;173351;173352;173353;173354;173355;173356;173357;173358;173359;173360;173361 173354 13 TGEALKTEENKIK LQVYIRQLRLALQGKTGEALKTEENKIKVV GKTGEALKTEENKIKVVALKITNNINVLIK K T G I K V 1 0 1 0 0 0 3 1 0 1 1 3 0 0 0 0 2 0 0 0 0 0 13 2 1459.7882 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 399 411 API5 Apoptosis inhibitor 5 yes no 3 0.055051 15.162 By MS/MS By matching 1 1 1.0173 1.117 9.9778 2 Median 1.0201 1.0409 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0145 1.1987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3008600 1289400 1719200 2174300 919650 1254700 0 0 0 834320 369760 464560 0 0 0 0 0 0 0 0 0 32900 1103 34586 171907;171908 173362;173363 173363 2 TGEEIFGTIGMRPNAK WKQTVFYMEDYLTVKTGEEIFGTIGMRPNA GEEIFGTIGMRPNAKNNRDLDFTIDLDFKG K T G A K N 1 1 1 0 0 0 2 3 0 2 0 1 1 1 1 0 2 0 0 0 0 0 16 1 1719.8614 E9PKG1;Q99873 E9PKG1 281 296 PRMT1 Protein arginine N-methyltransferase 1 yes no 2;3 1.0946E-09 136.48 By MS/MS By matching By MS/MS By matching 7 2 4 2 0.89326 0.92498 51.007 15 Median 0.97044 1.038 75.982 7 3 Median 1.0484 0.97707 19.506 2 0 Median 0.77549 0.88189 7.9446 4 0 Median 0.86094 0.75881 5.5227 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199880000 108320000 91561000 138750000 74981000 63769000 6475100 3299500 3175600 53387000 29445000 23942000 1269300 594130 675150 0 0 0 0 0 0 32901 947 34587;34588 171909;171910;171911;171912;171913;171914;171915;171916;171917;171918;171919;171920;171921;171922;171923 173364;173365;173366;173367;173368;173369;173370;173371;173372;173373 173366 331 10 TGEEINFGK KDIIHFFRHREQKEKTGEEINFGKLITKPS REQKEKTGEEINFGKLITKPSEGTTLRVED K T G G K L 0 0 1 0 0 0 2 2 0 1 0 1 0 1 0 0 1 0 0 0 0 0 9 0 993.47673 P49959;F8W7U8 P49959 408 416 MRE11A Double-strand break repair protein MRE11A yes no 2 0.00082669 95.741 By MS/MS 1 1.0714 1.0991 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0714 1.0991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8508200 4222200 4286000 0 0 0 0 0 0 8508200 4222200 4286000 0 0 0 0 0 0 0 0 0 32902 2407 34589 171924 173374 173374 1 TGEELGFDYGDRFWDIK LRFPRIAFFSSRDIRTGEELGFDYGDRFWD EELGFDYGDRFWDIKSKYFTCQCGSEKCKH R T G I K S 0 1 0 3 0 0 2 3 0 1 1 1 0 2 0 0 1 1 1 0 0 0 17 1 2046.9323 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7;A0A0G2JRR0;A0A0G2JRN8 A0A0G2JIS2 1112 1128 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes no 3 0.029674 15.392 By MS/MS 1 1.0039 1.1429 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0039 1.1429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2206100 1139100 1067000 0 0 0 0 0 0 2206100 1139100 1067000 0 0 0 0 0 0 0 0 0 32903 277 34590 171925 173375;173376 173376 2 TGEEVGFVVDAK SKCLATGPGIASTVKTGEEVGFVVDAKTAG TVKTGEEVGFVVDAKTAGKGKVTCTVLTPD K T G A K T 1 0 0 1 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 12 0 1249.619 O75369;E7EN95 O75369 1630 1641 FLNB Filamin-B yes no 2 6.1571E-05 94.297 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 1.2305 1.1374 26.464 6 Median 1.3891 1.334 NaN 1 0 Median 1.2139 1.0796 2.2044 2 0 Median 1.2241 1.3329 NaN 1 0 Median 1.2537 1.1798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52392 0.6531 NaN 1 0 Median 66058000 32904000 33155000 26651000 14844000 11808000 35515000 16502000 19013000 2692700 984480 1708200 938050 422960 515080 0 0 0 261580 150280 111300 32904 1664 34591 171926;171927;171928;171929;171930;171931;171932 173377;173378;173379;173380;173381;173382;173383;173384;173385;173386;173387 173380 11 TGEGAVSLMER PYKIAVLVLLNEMSRTGEGAVSLMERRRLN EMSRTGEGAVSLMERRRLNQLLLPLLQGPD R T G E R R 1 1 0 0 0 0 2 2 0 0 1 0 1 0 0 1 1 0 0 1 0 0 11 0 1148.5496 F5H0F9;Q9UJX4;F5H3S5 F5H0F9 47 57 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.0076573 60.518 By MS/MS By MS/MS 1 1 1.1124 1.0432 4.1372 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99258 1.0131 NaN 1 1 Median 1.2466 1.0742 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11569000 5650200 5918400 0 0 0 0 0 0 9247900 4601500 4646400 2320700 1048700 1272000 0 0 0 0 0 0 32905 1019 34592 171933;171934 173388;173389 173388 2 TGEGFYK PSLNKLVAENKFGKKTGEGFYKYK______ AENKFGKKTGEGFYKYK_____________ K T G Y K Y 0 0 0 0 0 0 1 2 0 0 0 1 0 1 0 0 1 0 1 0 0 0 7 0 800.37047 A0A0D9SFP2;E9PF18;Q16836;A0A1W2PNM1;A0A0A0MSE2;A0A1W2PQ78 A0A0D9SFP2 310 316 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes no 2 0.040795 44.692 By MS/MS 1 2.0927 1.7635 NaN 1 Median NaN NaN NaN 0 0 Median 2.0927 1.7635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2644900 845250 1799600 0 0 0 2644900 845250 1799600 0 0 0 0 0 0 0 0 0 0 0 0 32906 269 34593 171935 173390 173390 1 TGELEKETAPLRK GNGTESLNSVITSMKTGELEKETAPLRKDA MKTGELEKETAPLRKDADSSISVLEIHSQK K T G R K D 1 1 0 0 0 0 3 1 0 0 2 2 0 0 1 0 2 0 0 0 0 0 13 2 1470.8042 Q96T23;H0YER1;H0YCN2 Q96T23 499 511 RSF1 Remodeling and spacing factor 1 yes no 2;3 0.0004409 55.314 By MS/MS By MS/MS 4 3 0.7455 0.83222 14.635 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72155 0.8254 8.3168 3 0 Median 0.94117 0.96424 21.365 3 0 Plateau 25032000 14323000 10709000 0 0 0 0 0 0 0 0 0 0 0 0 18531000 10801000 7729500 6501700 3522100 2979600 32907 3740 34594 171936;171937;171938;171939;171940;171941;171942 173391;173392;173393;173394;173395;173396 173393 6 TGELGYLNPGVFTQSR SRSHQHVKITYRDGRTGELGYLNPGVFTQS GELGYLNPGVFTQSRRWKDHADMLKQYATC R T G S R R 0 1 1 0 0 1 1 3 0 0 2 0 0 1 1 1 2 0 1 1 0 0 16 0 1737.8686 P38435 P38435 420 435 GGCX Vitamin K-dependent gamma-carboxylase yes yes 2 7.9007E-05 75.479 By MS/MS By matching 2 1 0.75789 0.74696 24.26 3 Median 0.61659 0.61363 27.805 2 1 Median 0.93055 0.78491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11903000 6353900 5548700 9827200 5391600 4435600 2075400 962310 1113100 0 0 0 0 0 0 0 0 0 0 0 0 32908 2275 34595 171943;171944;171945 173397;173398;173399 173398 3 TGEMSGPVFTDSGIHIILR GQMQKPFEDASFALRTGEMSGPVFTDSGIH SGPVFTDSGIHIILRTE_____________ R T G L R T 0 1 0 1 0 0 1 3 1 3 1 0 1 1 1 2 2 0 0 1 0 0 19 0 2029.0303 Q13526;K7EN45 Q13526 143 161 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 2;3 1.3642E-12 98.531 By MS/MS By MS/MS By MS/MS 2 4 1 1.0469 0.95404 15.985 7 Median NaN NaN NaN 0 0 Median 0.99501 0.82955 7.8185 2 0 Median 1.0061 1.0209 14.296 4 1 Median NaN NaN NaN 0 0 Median 1.0882 1.1513 NaN 1 0 Median NaN NaN NaN 0 0 Median 31567000 15597000 15970000 0 0 0 2746700 1331300 1415500 25960000 13026000 12935000 0 0 0 2860100 1240600 1619500 0 0 0 32909 2822 34596;34597 171946;171947;171948;171949;171950;171951;171952 173400;173401;173402;173403;173404;173405;173406;173407;173408 173402 1516 9 TGENVEDAFLEAAK FAEENGLLFLEASAKTGENVEDAFLEAAKK KTGENVEDAFLEAAKKIYQNIQDGSLDLNA K T G A K K 3 0 1 1 0 0 3 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 14 0 1492.7046 P61106;X6RFL8 P61106 157 170 RAB14 Ras-related protein Rab-14 yes no 2 4.4911E-07 117.09 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.972 0.87595 37.281 4 Median 1.0717 0.99636 NaN 1 0 Median 0.88158 0.77008 NaN 1 0 Median 0.56649 0.53232 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5272 1.2727 NaN 1 0 Median 26370000 12738000 13632000 17969000 7499400 10469000 172230 81714 90520 7844800 5039900 2804900 0 0 0 0 0 0 384530 117280 267250 32910 2545 34598 171953;171954;171955;171956 173409;173410;173411 173410 3 TGENVEDAFLEAAKK FAEENGLLFLEASAKTGENVEDAFLEAAKK TGENVEDAFLEAAKKIYQNIQDGSLDLNAA K T G K K I 3 0 1 1 0 0 3 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 15 1 1620.7995 P61106;X6RFL8 P61106 157 171 RAB14 Ras-related protein Rab-14 yes no 3 8.4371E-05 57.288 By MS/MS By matching By MS/MS 2 1 1 1.3042 1.2701 15.838 4 Median 1.2582 1.3231 20.676 2 0 Median 1.2105 1.1077 NaN 1 0 Median 1.4141 1.4111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52315000 23681000 28634000 44177000 20214000 23963000 2685600 1101800 1583800 5451900 2364500 3087400 0 0 0 0 0 0 0 0 0 32911 2545 34599 171957;171958;171959;171960 173412;173413;173414 173413 3 TGEPLMSESTSNIDQGPR FQNNVQSQDPQVSTKTGEPLMSESTSNIDQ PLMSESTSNIDQGPRDHSVQLPKPVHKPNR K T G P R D 0 1 1 1 0 1 2 2 0 1 1 0 1 0 2 3 2 0 0 0 0 0 18 0 1917.8738 Q9NRL2 Q9NRL2 859 876 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 3.9052E-13 152.74 By MS/MS By matching 3 1 0.78283 0.76588 25.8 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63812 0.69548 31.301 3 0 Median 0.96037 0.84342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22667000 13188000 9479700 0 0 0 0 0 0 21243000 12458000 8784200 1424500 729050 695490 0 0 0 0 0 0 32912 4084 34600;34601 171961;171962;171963;171964 173415;173416;173417 173416 1871 3 TGETGIEETILEGHLGVTK NEIDWLKRIRDDVKRTGETGIEETILEGHL GIEETILEGHLGVTKELLAFQTSEKKFHIG R T G T K E 0 0 0 0 0 0 4 4 1 2 2 1 0 0 0 0 4 0 0 1 0 0 19 0 1983.0161 Q93008 Q93008 1417 1435 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2;3 2.4601E-08 77.023 By MS/MS By MS/MS 3 1 1.0453 1.003 13.502 4 Linear 1.0325 0.99884 15.451 3 1 Plateau NaN NaN NaN 0 0 Median 0.90736 1.0102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25703000 12481000 13222000 23518000 11473000 12046000 0 0 0 2184500 1008800 1175800 0 0 0 0 0 0 0 0 0 32913 3573 34602 171965;171966;171967;171968 173418;173419;173420;173421;173422 173418 5 TGETQSLFKDDVSTFPLIAAR QRRDVERALTRFMAKTGETQSLFKDDVSTF LFKDDVSTFPLIAARPFTIPYLTALLPSEL K T G A R P 2 1 0 2 0 1 1 1 0 1 2 1 0 2 1 2 3 0 0 1 0 0 21 1 2295.1747 Q7Z7C8 Q7Z7C8 197 217 TAF8 Transcription initiation factor TFIID subunit 8 yes yes 3 0.061274 16.716 By MS/MS 1 0.46199 0.5254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46199 0.5254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7251500 5372000 1879600 0 0 0 0 0 0 7251500 5372000 1879600 0 0 0 0 0 0 0 0 0 32914 3255 34603 171969 173423 173423 1 TGEVLHEVSNGSVVHR SGDPADATRCSICQKTGEVLHEVSNGSVVH GEVLHEVSNGSVVHRLCSDSCFSKFRANKG K T G H R L 0 1 1 0 0 0 2 2 2 0 1 0 0 0 0 2 1 0 0 4 0 0 16 0 1718.87 A6NHN7;A6NHB5;Q14202;A6NL54 A6NHN7 417 432 ZMYM3 Zinc finger MYM-type protein 3 yes no 3 7.5037E-05 48.899 By MS/MS By MS/MS 1 1 0.89697 0.85608 80.157 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44507 0.48569 NaN 1 0 Median 1.8077 1.5089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3718300 1773200 1945100 0 0 0 0 0 0 1939600 1237000 702610 1778700 536270 1242500 0 0 0 0 0 0 32915 516 34604 171970;171971 173424;173425 173424 2 TGEYPVPLIR FAREEIIPVAAEYDKTGEYPVPLIRRAWEL AEYDKTGEYPVPLIRRAWELGLMNTHIPEN K T G I R R 0 1 0 0 0 0 1 1 0 1 1 0 0 0 2 0 1 0 1 1 0 0 10 0 1143.6288 B7Z9I1;Q5T4U5;P11310;E9PJM9 B7Z9I1 34 43 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2 0.021797 51.854 By MS/MS 1 0.86959 0.86153 NaN 1 Median 0.86959 0.86153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5712700 3044300 2668400 5712700 3044300 2668400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32916 639 34605 171972 173426 173426 1 TGFAEGFLK MKTKNIPEAHQDAFKTGFAEGFLKAQALTQ HQDAFKTGFAEGFLKAQALTQKTNDSLRRT K T G L K A 1 0 0 0 0 0 1 2 0 0 1 1 0 2 0 0 1 0 0 0 0 0 9 0 968.49673 Q96I63;Q96TA2;R4GNA5;Q5T8D1;Q5T8D2 Q96I63 270 278 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 0.041822 45.972 By MS/MS 1 1.8617 1.786 NaN 1 Median 1.8617 1.786 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4447900 1845600 2602200 4447900 1845600 2602200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32917 3677 34606 171973 173427 173427 1 TGFAVIHDAAR RRLLLRGANPDLKDRTGFAVIHDAARAGFL LKDRTGFAVIHDAARAGFLDTLQTLLEFQA R T G A R A 3 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 11 0 1156.5989 P42773 P42773 69 79 CDKN2C Cyclin-dependent kinase 4 inhibitor C yes yes 2 0.00015911 114.5 By MS/MS By MS/MS 1 1 1.0799 0.98489 5.5961 2 Median 1.0228 1.0246 NaN 1 0 Median 1.1402 0.94668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4902000 2159500 2742500 2938900 1250100 1688800 1963200 909470 1053700 0 0 0 0 0 0 0 0 0 0 0 0 32918 2317 34607 171974;171975 173428;173429;173430 173429 3 TGFFEFQAAK TDQNYEKMMFKEALKTGFFEFQAAKDKYRE KEALKTGFFEFQAAKDKYRELAVEGMHREL K T G A K D 2 0 0 0 0 1 1 1 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 1144.5553 Q9P2J5 Q9P2J5 823 832 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0024811 60.118 By MS/MS By matching By matching By matching 1 3 1 1 1.3085 1.1679 26.525 6 Median 1.3247 1.2782 NaN 1 0 Median 1.2925 1.1648 1.9994 3 0 Median NaN NaN NaN 0 0 Median 1.2177 1.0368 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4548 2.1618 NaN 1 0 Median 22770000 9917200 12852000 17889000 7817800 10071000 4427100 1884200 2542900 0 0 0 399950 196630 203330 0 0 0 54048 18581 35467 32919 4224 34608 171976;171977;171978;171979;171980;171981 173431;173432 173432 2 TGFINLDKPSNPSSHEVVAWIR CGSNPLKREIGDYIRTGFINLDKPSNPSSH KPSNPSSHEVVAWIRRILRVEKTGHSGTLD R T G I R R 1 1 2 1 0 0 1 1 1 2 1 1 0 1 2 3 1 1 0 2 0 0 22 1 2466.2656 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 89 110 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3;4 7.3878E-07 41.711 By MS/MS By matching By MS/MS 1 1 2 0.71583 0.77387 10.498 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71158 0.80003 NaN 1 0 Median 0.97964 0.91928 NaN 1 0 Median 0.7089 0.73706 2.1881 2 0 Median NaN NaN NaN 0 0 Median 25570000 14305000 11264000 0 0 0 0 0 0 18739000 10687000 8052600 601240 248510 352720 6229000 3369900 2859100 0 0 0 32920 1634 34609 171982;171983;171984;171985 173433;173434;173435 173434 3 TGFQAVTGK QCETCHSRCSVASIKTGFQAVTGKRAQLRA SVASIKTGFQAVTGKRAQLRAKAN______ K T G G K R 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 2 0 0 1 0 0 9 0 907.47633 P20042 P20042 316 324 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.016364 57.708 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2895 1.2184 108.01 5 Median 1.2895 1.2445 NaN 1 0 Median 0.38838 0.36302 171.24 2 1 Median 1.3412 1.3112 NaN 1 1 Median 1.1678 1.0502 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26695000 11876000 14819000 2248100 1065200 1182900 5214400 2674800 2539600 6854300 2302400 4551900 12378000 5833400 6544900 0 0 0 0 0 0 32921 2072 34610 171986;171987;171988;171989;171990 173436;173437;173438;173439 173438 4 TGFSTSPESPYTHWK LVAYFNIEFTRCHKRTGFSTSPESPYTHWK TGFSTSPESPYTHWKQTVFYMEDYLTVKTG R T G W K Q 0 0 0 0 0 0 1 1 1 0 0 1 0 1 2 3 3 1 1 0 0 0 15 0 1723.7842 E9PKG1;Q99873 E9PKG1 253 267 PRMT1 Protein arginine N-methyltransferase 1 yes no 2;3 2.7277E-10 109.24 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 2 0.77298 0.70358 27.672 15 Median 0.75682 0.71138 13.641 4 0 Median 0.8164 0.70358 16.002 5 0 Median 0.67745 0.69824 48.231 4 1 Median 0.70493 0.5965 27.393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 283150000 160250000 122900000 106260000 58399000 47859000 17849000 9701900 8147200 153150000 88923000 64228000 5893800 3228300 2665500 0 0 0 0 0 0 32922 947 34611 171991;171992;171993;171994;171995;171996;171997;171998;171999;172000;172001;172002;172003;172004;172005 173440;173441;173442;173443;173444;173445;173446;173447;173448;173449;173450;173451;173452 173448 13 TGGEHVYFAK LDDTQASRKKMEELKTGGEHVYFAKFLTSE MEELKTGGEHVYFAKFLTSEKLMDLQLSDS K T G A K F 1 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 1 1 0 0 10 0 1107.5349 A0A087WWS1;Q96FV9;R4GMN4;A0A087WY84;R4GN58 A0A087WWS1 291 300 THOC1 THO complex subunit 1 yes no 2 0.0007807 71.379 By MS/MS 1 0.91927 0.79878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91927 0.79878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1327700 709550 618160 0 0 0 0 0 0 0 0 0 1327700 709550 618160 0 0 0 0 0 0 32923 62 34612 172006 173453;173454 173454 2 TGGIVMLGR PGIWAHGDYCRINPKTGGIVMLGRSDGTLN CRINPKTGGIVMLGRSDGTLNPNGVRFGSS K T G G R S 0 1 0 0 0 0 0 3 0 1 1 0 1 0 0 0 1 0 0 1 0 0 9 0 902.50077 Q86V21 Q86V21 531 539 AACS Acetoacetyl-CoA synthetase yes yes 2 0.012368 46.426 By matching By MS/MS 1 1 0.94685 0.88525 1.8117 2 Median 0.88595 0.89667 NaN 1 0 Median 1.0119 0.87398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3534500 1813700 1720700 1865200 912680 952560 1669200 901060 768140 0 0 0 0 0 0 0 0 0 0 0 0 32924 3284 34613 172007;172008 173455 173455 1 TGGLEIDSDFGGFR IVAAVGLEPNVELAKTGGLEIDSDFGGFRV KTGGLEIDSDFGGFRVNAELQARSNIWVAG K T G F R V 0 1 0 2 0 0 1 4 0 1 1 0 0 2 0 1 1 0 0 0 0 0 14 0 1469.6787 O95831;E9PMA0 O95831 409 422 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 2.9292E-05 132.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1 1.1146 1.107 24 7 Median 1.1146 1.0569 NaN 1 0 Median 1.1093 0.95947 43.276 2 1 Median 0.93884 1.0044 NaN 1 1 Median 1.8364 1.5356 NaN 1 0 Median 1.1014 1.1129 NaN 1 0 Median 1.2736 1.107 NaN 1 0 Median 31411000 14397000 17013000 13350000 6508200 6841800 12843000 5455100 7387400 2401800 1237600 1164200 1067000 378130 688890 1279300 701250 578030 469980 116920 353050 32925 1797 34614 172009;172010;172011;172012;172013;172014;172015 173456;173457;173458;173459 173456 4 TGGPAYGPSSDVSTASETESEKREEPNR RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA TASETESEKREEPNRAGPGDRDPPTRGEES R T G N R A 2 2 1 1 0 0 5 3 0 0 0 1 0 0 3 5 3 0 1 1 0 0 28 2 2937.3224 P51116 P51116 438 465 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 4 0.048687 17.527 By MS/MS 1 0.54925 0.64626 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54925 0.64626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2654400 1343100 1311200 0 0 0 0 0 0 2654400 1343100 1311200 0 0 0 0 0 0 0 0 0 32926 2426 34615 172016 173460 173460 0 TGGVLLHPIFGGGK WIKEELDKIVAYELKTGGVLLHPIFGGGKE KTGGVLLHPIFGGGKEKDNPASHLHFSIKH K T G G K E 0 0 0 0 0 0 0 5 1 1 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1351.7612 Q6P1X5;H0YC37 Q6P1X5 409 422 TAF2 Transcription initiation factor TFIID subunit 2 yes no 3 0.00066429 42.941 By MS/MS 2 0.8656 0.97069 11.815 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8656 0.97069 11.815 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5780300 3089900 2690400 0 0 0 0 0 0 5780300 3089900 2690400 0 0 0 0 0 0 0 0 0 32927 3154 34616 172017;172018 173461 173461 1 TGGYLTESGYVNLQR AIDRLVNIYKNVVHKTGGYLTESGYVNLQR TGGYLTESGYVNLQRVQMIMLAVGEVEDSI K T G Q R V 0 1 1 0 0 1 1 3 0 0 2 0 0 0 0 1 2 0 2 1 0 0 15 0 1656.8107 Q9H0D6 Q9H0D6 374 388 XRN2 5-3 exoribonuclease 2 yes yes 2 0.00016352 63.408 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32928 3924 34617 172019 173462 173462 1 TGHSLLHTLYGR GKGGQAHRCCCVADRTGHSLLHTLYGRSLR ADRTGHSLLHTLYGRSLRYDTSYFVEYFAL R T G G R S 0 1 0 0 0 0 0 2 2 0 3 0 0 0 0 1 2 0 1 0 0 0 12 0 1353.7153 P31040;D6RFM5;A0A494C1T6 P31040 196 207 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2;3 2.9184E-30 209.1 By MS/MS By MS/MS 3 3 1.289 1.2309 52.623 6 Median 1.2796 1.2038 69.897 3 1 Median 1.7125 1.4723 15.909 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127490000 50285000 77201000 45579000 19191000 26388000 81907000 31093000 50813000 0 0 0 0 0 0 0 0 0 0 0 0 32929 2200 34618 172020;172021;172022;172023;172024;172025 173463;173464;173465;173466;173467;173468;173469 173468 7 TGHYLTVK ALVTGYFMQVAHLERTGHYLTVKDNQVVQL QVAHLERTGHYLTVKDNQVVQLHPSTVLDH R T G V K D 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 1 1 0 0 8 0 917.49707 O43143 O43143 707 714 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0026731 106.04 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.221 1.0763 8.755 5 Median NaN NaN NaN 0 0 Median 1.221 1.0668 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1804 1.026 NaN 1 0 Median 1.1416 1.1763 12.571 2 0 Median 1.2989 1.086 NaN 1 0 Median 15110000 6820000 8290200 0 0 0 8221600 3554600 4667100 0 0 0 703420 304520 398900 5839500 2822300 3017200 345670 138640 207020 32930 1553 34619 172026;172027;172028;172029;172030 173470;173471;173472;173473 173473 4 TGIDLGTTGR ASSASSFLDSDELERTGIDLGTTGRLQLMA DELERTGIDLGTTGRLQLMARLAEGTGLQI R T G G R L 0 1 0 1 0 0 0 3 0 1 1 0 0 0 0 0 3 0 0 0 0 0 10 0 989.51417 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;A0A0U1RQW2;A0A087X122 Q14498 347 356 RBM39 RNA-binding protein 39 yes no 2 5.1781E-05 135.71 By MS/MS By MS/MS By MS/MS 3 1 1 1.0923 1.0503 6.1224 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0853 1.0152 6.3009 3 1 Plateau 1.2159 1.0503 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3226 1.1359 NaN 1 0 Median 43004000 19694000 23310000 0 0 0 0 0 0 27919000 13160000 14759000 7036600 3146400 3890200 0 0 0 8048800 3387600 4661100 32931 2879 34620 172031;172032;172033;172034;172035 173474;173475;173476;173477;173478;173479 173475 6 TGIDQLVVTPISQAQAK VVDPGFVKQKVYNSKTGIDQLVVTPISQAQ IDQLVVTPISQAQAKQRAGRAGRTGPGKCY K T G A K Q 2 0 0 1 0 3 0 1 0 2 1 1 0 0 1 1 2 0 0 2 0 0 17 0 1767.9731 F5H658;Q14562 F5H658 869 885 DHX8 ATP-dependent RNA helicase DHX8 yes no 2 2.5025E-05 58.674 By matching By MS/MS By matching By matching 1 1 1 1 1.0314 0.91511 11.889 4 Median 1.1195 1.1299 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8314 0.90103 NaN 1 0 Median 0.98783 0.86384 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0769 0.92941 NaN 1 0 Median 5356000 2736500 2619500 1227900 569910 658020 0 0 0 3837100 2020100 1817000 141200 84517 56680 0 0 0 149740 61965 87772 32932 1040 34621 172036;172037;172038;172039 173480;173481 173480 2 TGILMLNMGGPETLGDVHDFLLR QGAKPQVQPQKRKPKTGILMLNMGGPETLG GGPETLGDVHDFLLRLFLDRDLMTLPIQNK K T G L R L 0 1 1 2 0 0 1 4 1 1 5 0 2 1 1 0 2 0 0 1 0 0 23 0 2498.2662 P22830;K7ELX4;K7EJM8 P22830 69 91 FECH Ferrochelatase, mitochondrial yes no 3 2.7587E-16 70.352 By MS/MS 1 1.0993 0.94797 NaN 1 Median NaN NaN NaN 0 0 Median 1.0993 0.94797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2796300 1262700 1533600 0 0 0 2796300 1262700 1533600 0 0 0 0 0 0 0 0 0 0 0 0 32933 2106 34622 172040 173482;173483 173483 2 TGIQEMR GIEKPPFELPDFIKRTGIQEMREALQEKEE ELPDFIKRTGIQEMREALQEKEEQKTMKSK R T G M R E 0 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 7 0 833.40654 Q13435;E9PPJ0 Q13435 531 537 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.019394 81.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 0.99391 0.98243 9.295 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1972 1.0227 NaN 1 0 Median 0.93306 0.98243 4.0858 2 2 Median 1.0259 0.83516 NaN 1 1 Median 8450400 4357900 4092500 0 0 0 0 0 0 0 0 0 838890 342750 496140 6214600 3344600 2869900 1397000 670550 726420 32934 2817 34623 172041;172042;172043;172044;172045;172046;172047 173484;173485;173486;173487;173488;173489;173490 173486 7 TGIREDITYQQPR WILEQLCQDVPWKQRTGIREDITYQQPRLT QRTGIREDITYQQPRLTAWYGELPYTYSRI R T G P R L 0 2 0 1 0 2 1 1 0 2 0 0 0 0 1 0 2 0 1 0 0 0 13 1 1575.8005 E9PSA5;Q96Q83 E9PSA5 118 130 ALKBH3 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 yes no 3 0.0003358 60.161 By MS/MS 1 1.0154 0.93466 NaN 1 Median NaN NaN NaN 0 0 Median 1.0154 0.93466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2948300 1392800 1555500 0 0 0 2948300 1392800 1555500 0 0 0 0 0 0 0 0 0 0 0 0 32935 988 34624 172048 173491 173491 1 TGISDVFAK FVGNLNFNKSAPELKTGISDVFAKNDLAVV SAPELKTGISDVFAKNDLAVVDVRIGMTRK K T G A K N 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 936.49165 P19338 P19338 325 333 NCL Nucleolin yes yes 2 0.0029628 68.383 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 3 2 1 1.178 1.0481 77.667 16 Median 1.1643 1.0789 19.457 4 0 Median 1.1862 1.0011 150.81 4 0 Median 1.2642 1.3116 3.6241 2 0 Median 1.1651 1.0067 7.2576 3 0 Median 0.89519 0.88114 26.521 2 0 Median 1.2047 0.98395 NaN 1 0 Median 309030000 142440000 166590000 110420000 50912000 59505000 45178000 20894000 24284000 67461000 29289000 38172000 18881000 8425100 10456000 45515000 23253000 22262000 21583000 9667700 11916000 32936 2063 34625 172049;172050;172051;172052;172053;172054;172055;172056;172057;172058;172059;172060;172061;172062;172063;172064 173492;173493;173494;173495;173496;173497;173498;173499;173500;173501;173502;173503;173504;173505;173506;173507;173508;173509;173510;173511;173512;173513;173514 173492 23 TGISEEAAIEENKR NVGNEASFHGQERTKTGISEEAAIEENKRN KTGISEEAAIEENKRNDDSEADTAKLNAKE K T G K R N 2 1 1 0 0 0 4 1 0 2 0 1 0 0 0 1 1 0 0 0 0 0 14 1 1545.7635 Q5UIP0;H7C2B5 Q5UIP0 1935 1948 RIF1 Telomere-associated protein RIF1 yes no 3 0.00011019 69.716 By MS/MS By MS/MS 2 3 1.0952 1.0525 15.034 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93102 1.0943 27.489 2 0 Median 1.0952 1.0525 8.4669 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11973000 5825300 6147200 0 0 0 0 0 0 5429900 2763600 2666400 6542600 3061800 3480900 0 0 0 0 0 0 32937 3109 34626 172065;172066;172067;172068;172069 173515;173516;173517;173518;173519;173520;173521 173520 6 TGISHGHTVYVVHDGFEGLAK APAAGMNAAVRSAVRTGISHGHTVYVVHDG HTVYVVHDGFEGLAKGQVQEVGWHDVAGWL R T G A K G 1 0 0 1 0 0 1 4 3 1 1 1 0 1 0 1 2 0 1 3 0 0 21 0 2223.1073 P17858 P17858 424 444 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 4 0.015928 16.096 By MS/MS By matching 2 1 1.2222 1.2201 3.0834 3 Median 1.2197 1.1983 2.5552 2 0 Median 1.4328 1.2513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25512000 11498000 14015000 20115000 9390000 10725000 5397800 2107900 3289900 0 0 0 0 0 0 0 0 0 0 0 0 32938 2047 34627 172070;172071;172072 173522 173522 1 TGIVDISILTTGMSATSR RLHREALKQSATDPRTGIVDISILTTGMSA VDISILTTGMSATSRKRKEELAEALKKLIL R T G S R K 1 1 0 1 0 0 0 2 0 3 1 0 1 0 0 3 4 0 0 1 0 0 18 0 1821.9506 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 728 745 MCM4 DNA replication licensing factor MCM4 yes no 2 1.2853E-11 108.17 By MS/MS By MS/MS By MS/MS 1 1 1 1.237 1.0734 11.393 3 Plateau 0.94035 0.92661 NaN 1 0 Median 1.2505 1.0822 NaN 1 0 Median 0.81072 0.86673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8636900 3786400 4850500 2226300 897640 1328700 5243000 2251500 2991500 1167600 637280 530270 0 0 0 0 0 0 0 0 0 32939 441 34628 172073;172074;172075 173523;173524;173525;173526;173527;173528 173527 6 TGIYEEK EDYKLHFIFRHKNPKTGIYEEKHAKRPDAD IFRHKNPKTGIYEEKHAKRPDADLKTYFTD K T G E K H 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 7 0 838.40725 P27824;D6RGY2;D6RFL1;H0Y9H1 P27824 211 217 CANX Calnexin yes no 2 0.016379 68.787 By MS/MS By MS/MS 1 2 1.2496 1.0921 14.632 3 Median 1.0887 1.0533 NaN 1 0 Median 1.4242 1.2273 16.505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18093000 7550200 10543000 3185600 1392900 1792700 14908000 6157300 8750500 0 0 0 0 0 0 0 0 0 0 0 0 32940 2158 34629 172076;172077;172078 173529;173530;173531;173532;173533;173534;173535 173533 7 TGKEYIPGQPPLSQSSDSSPTR AVECLLSLKAQYKEKTGKEYIPGQPPLSQS GQPPLSQSSDSSPTRNSEPAGLETPEAKVL K T G T R N 0 1 0 1 0 2 1 2 0 1 1 1 0 0 4 5 2 0 1 0 0 0 22 1 2331.1343 P07814;V9GYZ6 P07814 868 889 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 1.8016E-14 88.09 By MS/MS 1 0.63364 0.63581 NaN 1 Median 0.63364 0.63581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13939000 8924700 5014300 13939000 8924700 5014300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32941 1892 34630 172079 173536;173537 173537 2 TGKPLPFGTLGVHK HSMILDSEVLLIDNKTGKPLPFGTLGVHKK KTGKPLPFGTLGVHKKAAFQDANVCLFVFD K T G H K K 0 0 0 0 0 0 0 3 1 0 2 2 0 1 2 0 2 0 0 1 0 0 14 1 1450.8296 P49916 P49916 568 581 LIG3 DNA ligase 3 yes yes 3 0.00014519 69.92 By MS/MS By MS/MS 1 2 1.0789 1.0278 13.745 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72558 0.82846 NaN 1 0 Median 1.0869 1.0485 2.8229 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15392000 9304000 6087700 0 0 0 0 0 0 10078000 6412300 3665600 5313900 2891800 2422200 0 0 0 0 0 0 32942 2406 34631 172080;172081;172082 173538;173539;173540;173541 173540 4 TGKPMINLYTDK GEFFKQIGIIKTNKKTGKPMINLYTDKDTG NKKTGKPMINLYTDKDTGKPKGEATVSFDD K T G D K D 0 0 1 1 0 0 0 1 0 1 1 2 1 0 1 0 2 0 1 0 0 0 12 1 1379.7119 Q92804;A0A075B7D9 Q92804 266 277 TAF15 TATA-binding protein-associated factor 2N yes no 3 0.010857 26.969 By matching By MS/MS 1 1 0.91614 0.90019 19.02 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75257 0.78691 NaN 1 0 Median 1.1153 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6261800 3153700 3108100 0 0 0 0 0 0 5324500 2762500 2562000 937250 391150 546100 0 0 0 0 0 0 32943 3559 34632 172083;172084 173542;173543 173542 2 TGKVDNIQAGELTEGIWR RLRLSRQGIIFKNSKTGKVDNIQAGELTEG VDNIQAGELTEGIWRRVALGHGLKLLTKNG K T G W R R 1 1 1 1 0 1 2 3 0 2 1 1 0 0 0 0 2 1 0 1 0 0 18 1 1986.0171 Q08945 Q08945 37 54 SSRP1 FACT complex subunit SSRP1 yes yes 3 1.0556E-11 105.02 By MS/MS By matching 3 1 1.2476 1.4292 9.7384 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3014 1.4318 9.3464 3 0 Plateau 1.251 1.1524 NaN 1 0 Median 22687000 9406300 13281000 0 0 0 0 0 0 0 0 0 0 0 0 22312000 9240500 13072000 374890 165820 209070 32944 2743 34633 172085;172086;172087;172088 173544;173545;173546;173547 173545 4 TGLATVEAQGFQASDMHAWK LRQQQRWKDGLQELRTGLATVEAQGFQASD VEAQGFQASDMHAWKQHWNHQLYKALEHQY R T G W K Q 4 0 0 1 0 2 1 2 1 0 1 1 1 1 0 1 2 1 0 1 0 0 20 0 2147.0106 Q8NCM8;A0A3B3ISP9 Q8NCM8 727 746 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 3 7.4336E-06 44.788 By MS/MS 1 0.75874 0.75954 NaN 1 Median 0.75874 0.75954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9873900 5671900 4202000 9873900 5671900 4202000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32945 3418 34634 172089 173548 173548 1 TGLAVTVGQAK EDSSSSEESDSEEEKTGLAVTVGQAKSVGK EEEKTGLAVTVGQAKSVGKGLQVKAASVPV K T G A K S 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 11 0 1043.5975 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 706 716 TCOF1 Treacle protein no no 2 0.0022708 54.416 By matching By MS/MS By MS/MS 1 1 2 1.2209 1.0843 14.941 4 Median NaN NaN NaN 0 0 Median 1.5129 1.4467 NaN 1 0 Median 0.95451 1.0639 NaN 1 0 Median 1.2209 1.0816 3.034 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11704000 5196000 6508300 0 0 0 1473200 443010 1030200 3438200 1704800 1733400 6792900 3048200 3744700 0 0 0 0 0 0 32946 2816;891 34635 172090;172091;172092;172093 173549;173550 173550 2 TGLIDYNQLALTAR TSIFFESMPYKLNPKTGLIDYNQLALTARL KTGLIDYNQLALTARLFRPRLIIAGTSAYA K T G A R L 2 1 1 1 0 1 0 1 0 1 3 0 0 0 0 0 2 0 1 0 0 0 14 0 1547.8308 P34897;G3V2Y4;G3V5L0 P34897 201 214 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 5.0227E-09 160.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 2 1 1.149 1.0132 23.006 10 Median 0.97576 0.98957 3.0471 3 0 Plateau 1.2393 1.0374 NaN 1 0 Median 0.91617 0.90269 3.2022 2 0 Median 1.4496 1.2406 NaN 1 0 Median 1.6462 1.6375 4.7064 2 0 Median 1.4296 1.1256 NaN 1 0 Median 200790000 93792000 106990000 74124000 34410000 39714000 58714000 26877000 31837000 51837000 26291000 25546000 11330000 4554200 6775300 4577800 1598500 2979300 204210 61323 142890 32947 2228 34636 172094;172095;172096;172097;172098;172099;172100;172101;172102;172103 173551;173552;173553;173554;173555;173556;173557;173558;173559;173560;173561;173562;173563;173564;173565;173566 173561 16 TGLIKGSGTAEVELKK RPVAVALDTKGPEIRTGLIKGSGTAEVELK GLIKGSGTAEVELKKGATLKITLDNAYMEK R T G K K G 1 0 0 0 0 0 2 3 0 1 2 3 0 0 0 1 2 0 0 1 0 0 16 2 1629.9301 H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;P14618 P14618 121 136 PKM Pyruvate kinase;Pyruvate kinase PKM no no 3 0.007706 25.365 By MS/MS By matching 2 1 0.75795 1.4397 37.817 3 Plateau 0.98888 1.0857 42.349 2 0 Median 0.75795 0.72773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7165800 3308000 3857800 5106400 2333200 2773200 2059400 974780 1084600 0 0 0 0 0 0 0 0 0 0 0 0 32948 2005;1237 34637 172104;172105;172106 173567;173568 173567 2 TGLQAGLTIDEFAPR LELAYTLADGLEYSRTGLQAGLTIDEFAPR TGLQAGLTIDEFAPRLSFFWGIGMNFYMEI R T G P R L 2 1 0 1 0 1 1 2 0 1 2 0 0 1 1 0 2 0 0 0 0 0 15 0 1587.8257 P22033 P22033 290 304 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 0.065362 32.946 By MS/MS 1 0.83967 0.83144 NaN 1 Median 0.83967 0.83144 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1785200 1059200 726080 1785200 1059200 726080 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32949 2095 34638 172107 173569 173569 1 TGLRTMPPINLQEK VPDPLCSGDSTSANKTGLRTMPPINLQEKQ KTGLRTMPPINLQEKQVICLSGDDSSTCIG K T G E K Q 0 1 1 0 0 1 1 1 0 1 2 1 1 0 2 0 2 0 0 0 0 0 14 1 1596.8658 Q6P2E9 Q6P2E9 64 77 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 4 0.018297 33.227 By MS/MS 1 0.20787 0.20868 NaN 1 Median 0.20787 0.20868 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7210300 5985600 1224700 7210300 5985600 1224700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32950 3155 34639 172108 173570 173570 1 TGLSSEQTVNVLAQILK PMTTKDLLKKFQTKKTGLSSEQTVNVLAQI LSSEQTVNVLAQILKRLNPERKMINDKMHF K T G L K R 1 0 1 0 0 2 1 1 0 1 3 1 0 0 0 2 2 0 0 2 0 0 17 0 1799.9993 P35269;M0QXD6 P35269 482 498 GTF2F1 General transcription factor IIF subunit 1 yes no 2 0.00014288 48.741 By matching By MS/MS By matching 1 1 1 1.0958 1.016 4.9345 3 Median 1.0527 1.016 NaN 1 0 Median 1.0958 0.96489 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2047 1.0649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1247900 603240 644640 406170 189120 217050 765110 381070 384050 0 0 0 76597 33055 43543 0 0 0 0 0 0 32951 2240 34640 172109;172110;172111 173571;173572 173572 2 TGLSSEQTVNVLAQILKR PMTTKDLLKKFQTKKTGLSSEQTVNVLAQI SSEQTVNVLAQILKRLNPERKMINDKMHFS K T G K R L 1 1 1 0 0 2 1 1 0 1 3 1 0 0 0 2 2 0 0 2 0 0 18 1 1956.1004 P35269;M0QXD6 P35269 482 499 GTF2F1 General transcription factor IIF subunit 1 yes no 3 0.023548 24.538 By MS/MS 1 0.8152 0.81823 NaN 1 Median 0.8152 0.81823 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8003900 4207200 3796600 8003900 4207200 3796600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32952 2240 34641 172112 173573 173573 1 TGLTPLMEAASGGYAEVGR SLLLDRKANVEHRAKTGLTPLMEAASGGYA PLMEAASGGYAEVGRVLLDKGADVNAPPVP K T G G R V 3 1 0 0 0 0 2 4 0 0 2 0 1 0 1 1 2 0 1 1 0 0 19 0 1878.9146 H0YM23;O75179;H0YLQ3;H7C2F5;H3BLS9;Q8IWZ3;E9PDP5 H0YM23 1168 1186 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 no no 2 1.1358E-07 72.265 By MS/MS By matching By matching 3 1 1 0.78676 0.79313 11.502 5 Median 0.86839 0.85447 10.329 3 0 Plateau 1.0501 0.93054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70603 0.72375 NaN 1 0 Median NaN NaN NaN 0 0 Median 10943000 6012100 4931200 9914500 5496500 4418000 372420 184730 187680 0 0 0 0 0 0 656400 330870 325520 0 0 0 32953 1197;3329 34642 172113;172114;172115;172116;172117 173574;173575 173575 2 TGLVEFAR ______________________________ LFSVSDKTGLVEFARNLTALGLNLVASGGT K T G A R N 1 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 891.48142 P31939;F8WEF0 P31939 15 22 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.0033382 98.997 By MS/MS 1 1.1908 1.1259 NaN 1 Median 1.1908 1.1259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19447000 9197800 10249000 19447000 9197800 10249000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32954 2207 34643 172118 173576;173577 173576 2 TGLYNYYDDEK MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ MMHRTGLYNYYDDEKEKLQIVEMPLAHKLS R T G E K E 0 0 1 2 0 0 1 1 0 0 1 1 0 0 0 0 1 0 3 0 0 0 11 0 1379.5881 P50454;E9PPV6;E9PR70;E9PKH2 P50454 240 250 SERPINH1 Serpin H1 yes no 2 0.00041805 70.1 By MS/MS By matching By MS/MS By matching By matching 1 2 1 2 1 1.2628 1.1227 19.834 7 Median 1.145 1.0843 NaN 1 0 Median 1.2848 1.1178 17.829 2 0 Median 1.1635 1.1227 NaN 1 0 Median 1.2931 1.1282 0.74263 2 0 Median NaN NaN NaN 0 0 Median 2.1597 1.8164 NaN 1 0 Median 31490000 13981000 17509000 4362300 1961000 2401400 4052700 1871600 2181100 13776000 6177900 7598200 8262700 3643100 4619500 0 0 0 1036300 327230 709050 32955 2414 34644 172119;172120;172121;172122;172123;172124;172125 173578;173579;173580 173580 3 TGLYNYYDDEKEK MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ HRTGLYNYYDDEKEKLQIVEMPLAHKLSSL R T G E K L 0 0 1 2 0 0 2 1 0 0 1 2 0 0 0 0 1 0 3 0 0 0 13 1 1636.7257 P50454;E9PPV6;E9PR70;E9PKH2 P50454 240 252 SERPINH1 Serpin H1 yes no 2;3 1.3376E-07 110.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 5 1 3 1.3175 1.2541 22.37 20 Median 0.97571 0.93541 14.193 3 0 Median 1.21 1.1253 15.829 4 0 Median 0.99218 1.0193 14.309 4 0 Median 1.4124 1.3769 10.974 5 0 Median 1.6348 1.7452 NaN 1 0 Median 1.5663 1.3593 8.3307 3 0 Median 261850000 117320000 144530000 54044000 26961000 27083000 32265000 14151000 18114000 69456000 33742000 35713000 81973000 33672000 48301000 13284000 4902900 8381100 10824000 3887000 6936800 32956 2414 34645 172126;172127;172128;172129;172130;172131;172132;172133;172134;172135;172136;172137;172138;172139;172140;172141;172142;172143;172144;172145 173581;173582;173583;173584;173585;173586;173587;173588;173589;173590;173591;173592;173593;173594;173595;173596;173597 173593 17 TGMILLAGEITSR QQDPDAKVACETVAKTGMILLAGEITSRAA AKTGMILLAGEITSRAAVDYQKVVREAVKH K T G S R A 1 1 0 0 0 0 1 2 0 2 2 0 1 0 0 1 2 0 0 0 0 0 13 0 1360.7384 P31153 P31153 62 74 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 0.00030558 89.548 By MS/MS By MS/MS By MS/MS 1 1 2 0.92437 0.96453 25.012 4 Median 1.1786 1.1698 NaN 1 1 Median 0.83385 0.72602 NaN 1 0 Median 0.87018 0.96453 26.799 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43201000 21657000 21544000 4754600 2177600 2577000 33389000 17533000 15856000 5057200 1946300 3110900 0 0 0 0 0 0 0 0 0 32957 2202 34646;34647 172146;172147;172148;172149 173598;173599;173600;173601;173602 173598 936 5 TGMYYLR KLTSMHFYGWKQGLKTGMYYLRTRPAANPI YGWKQGLKTGMYYLRTRPAANPIQFTLNKE K T G L R T 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 2 0 0 0 7 0 902.43202 P23921;E9PL69 P23921 734 740 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 0.010361 82.263 By MS/MS By MS/MS 1 1 1.2882 1.166 0.72388 2 Median 1.2386 1.172 NaN 1 0 Median 1.3397 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15322000 6783700 8538400 10658000 4761500 5896800 4663700 2022100 2641600 0 0 0 0 0 0 0 0 0 0 0 0 32958 2121 34648 172150;172151 173603;173604;173605;173606 173604 4 TGNFISTSTSLPR SDDESEEDEDDLLQRTGNFISTSTSLPRGI QRTGNFISTSTSLPRGILKMKNCQHANAER R T G P R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 1 3 3 0 0 0 0 0 13 0 1379.7045 Q9Y5J1 Q9Y5J1 221 233 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 4.3111E-07 108.7 By MS/MS By matching 3 1 1.0484 1.0559 27.812 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1512 1.173 21.45 3 0 Median 0.8866 0.76352 NaN 1 0 Median 36045000 17967000 18078000 0 0 0 0 0 0 0 0 0 0 0 0 32307000 15978000 16329000 3737900 1988900 1749000 32959 4458 34649 172152;172153;172154;172155 173607;173608;173609 173608 3 TGNFQVTELGR ALMLDKNNLVKYDKKTGNFQVTELGRIASH YDKKTGNFQVTELGRIASHYYITNDTVQTY K T G G R I 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1220.6149 O75643;A0A494C1A5 O75643 976 986 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00011337 135.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 0.94733 0.86477 18.698 6 Median 0.69187 0.6492 NaN 1 0 Median 1.115 0.94721 NaN 1 0 Median 0.94812 1.0336 NaN 1 0 Median 1.179 1.0421 NaN 1 0 Median 0.77483 0.7895 NaN 1 0 Median 0.94654 0.78461 NaN 1 0 Median 160270000 82079000 78191000 27986000 17892000 10094000 20137000 10111000 10026000 63983000 32369000 31614000 17783000 7610600 10172000 25016000 11126000 13890000 5365400 2971100 2394200 32960 1688 34650 172156;172157;172158;172159;172160;172161 173610;173611;173612;173613;173614;173615;173616;173617;173618;173619;173620 173616 11 TGNIPALVR MALFPHLLQPVLWERTGNIPALVRLLQAFL PVLWERTGNIPALVRLLQAFLERGSNTIAS R T G V R L 1 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 9 0 939.55016 P55060 P55060 698 706 CSE1L Exportin-2 yes yes 2 0.0035039 81.548 By MS/MS By MS/MS 2 1 0.89967 0.86589 NaN 1 Median 0.89967 0.86589 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20069000 10813000 9256300 20069000 10813000 9256300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32961 2493 34651 172162;172163;172164 173621;173622;173623 173621 3 TGNQHFGYLYGR ENHTVADRFLDFWRKTGNQHFGYLYGRYTE WRKTGNQHFGYLYGRYTEHKDIPLGIRAEV K T G G R Y 0 1 1 0 0 1 0 3 1 0 1 0 0 1 0 0 1 0 2 0 0 0 12 0 1411.6633 Q8TAT6 Q8TAT6 244 255 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 3 0.0010243 45.257 By MS/MS By matching By matching 1 1 1 1.1751 1.0659 6.9848 3 Plateau 1.1759 1.1223 NaN 1 0 Median 1.1699 1.0124 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1751 0.98237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21231000 9374800 11856000 9593000 4439800 5153200 8943300 3855400 5087900 0 0 0 2694900 1079600 1615300 0 0 0 0 0 0 32962 3456 34652 172165;172166;172167 173624 173624 1 TGPAAAQVQVGK KESPRKGAAPAPPRKTGPAAAQVQVGKQEE PRKTGPAAAQVQVGKQEEDSRSSSEESDSD K T G G K Q 3 0 0 0 0 2 0 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 12 0 1125.6142 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 459 470 TCOF1 Treacle protein no no 2 0.0025427 48.423 By MS/MS 2 0.85693 0.73622 5.8428 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85693 0.73622 5.8428 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1122100 586980 535070 0 0 0 0 0 0 0 0 0 1122100 586980 535070 0 0 0 0 0 0 32963 2816;891 34653 172168;172169 173625 173625 1 TGPFAEHSNQLWNISAVPSWSK DYMFLECILFITEMKTGPFAEHSNQLWNIS SNQLWNISAVPSWSKVNQGLIRMYKAECLE K T G S K V 2 0 2 0 0 1 1 1 1 1 1 1 0 1 2 4 1 2 0 1 0 0 22 0 2455.1921 A6PVN5;Q15257;F6WIT2;A6PVN9;Q68CR8;B7ZBQ0;B7ZBP9;B7ZBP7;B4DDQ6;H0Y6E5 A6PVN5 271 292 PPP2R4;DKFZp781M17165 Serine/threonine-protein phosphatase 2A activator yes no 3 1.9539E-12 70.453 By MS/MS 1 0.80767 0.75437 NaN 1 Median 0.80767 0.75437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5794500 3234100 2560300 5794500 3234100 2560300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32964 533 34654 172170 173626 173626 1 TGPNLHGLFGR KCSQCHTVEKGGKHKTGPNLHGLFGRKTGQ GKHKTGPNLHGLFGRKTGQAPGYSYTAANK K T G G R K 0 1 1 0 0 0 0 3 1 0 2 0 0 1 1 0 1 0 0 0 0 0 11 0 1167.6149 C9JFR7;P99999 C9JFR7 29 39 CYCS Cytochrome c no no 2 1.3319E-09 170.95 By MS/MS By MS/MS By MS/MS 2 1 2 1.2567 1.177 18.333 5 Median 1.0252 1.0042 22.459 2 0 Median 1.3041 1.1159 NaN 1 0 Median 1.3188 1.328 7.0203 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 359740000 161000000 198740000 50445000 23579000 26866000 88445000 38791000 49654000 220850000 98634000 122220000 0 0 0 0 0 0 0 0 0 + 32965 696 34655 172171;172172;172173;172174;172175 173627;173628;173629;173630;173631;173632;173633 173632 7 TGPNLHGLFGRK KCSQCHTVEKGGKHKTGPNLHGLFGRKTGQ KHKTGPNLHGLFGRKTGQAPGYSYTAANKN K T G R K T 0 1 1 0 0 0 0 3 1 0 2 1 0 1 1 0 1 0 0 0 0 0 12 1 1295.7099 C9JFR7;P99999 C9JFR7 29 40 CYCS Cytochrome c no no 2;3 3.0523E-05 89.548 By MS/MS By MS/MS By MS/MS 1 2 1 1.4258 1.4188 66.761 4 Median 1.461 1.4326 NaN 1 0 Median 2.8361 2.504 100.71 2 1 Median 1.3582 1.405 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141260000 43997000 97266000 47501000 18778000 28724000 72337000 16838000 55499000 21425000 8380900 13044000 0 0 0 0 0 0 0 0 0 + 32966 696 34656 172176;172177;172178;172179 173634;173635;173636;173637;173638;173639;173640;173641;173642;173643 173641 10 TGPQLLELSPGEGFSIQEK ELIAEHKPHIDKMNKTGPQLLELSPGEGFS LLELSPGEGFSIQEKYVAADTLYSQIKEDV K T G E K Y 0 0 0 0 0 2 3 3 0 1 3 1 0 1 2 2 1 0 0 0 0 0 19 0 2029.0368 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3914 3932 DST Dystonin yes no 2 0.031775 33.204 By MS/MS 1 0.79402 0.78849 NaN 1 Median 0.79402 0.78849 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4322000 2569600 1752400 4322000 2569600 1752400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32967 934 34657 172180 173644 173644 1 TGQAAELGGLLK VKEQSILELGSLLAKTGQAAELGGLLKYVR LAKTGQAAELGGLLKYVRPFLNSISKAKAA K T G L K Y 2 0 0 0 0 1 1 3 0 0 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1156.6452 O00231;J3QRY4 O00231 60 71 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.00061798 67.207 By MS/MS By matching By matching By matching 3 4 1 1 1.064 0.95576 18.877 9 Median 1.064 0.9801 12.584 3 0 Plateau 1.1717 0.9974 8.5337 4 0 Median 0.59911 0.60223 NaN 1 0 Median 1.0545 0.98718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55297000 26890000 28407000 40521000 19403000 21119000 11320000 5227500 6092800 3377600 2221700 1155900 77912 38611 39302 0 0 0 0 0 0 32968 1448 34658 172181;172182;172183;172184;172185;172186;172187;172188;172189 173645;173646 173645 2 TGQAGSLSGSPKPFSPQLSAPITTK MDFLDKSTASPASTKTGQAGSLSGSPKPFS PKPFSPQLSAPITTKTDKTSTTGSILNLNL K T G T K T 2 0 0 0 0 2 0 3 0 1 2 2 0 1 4 5 3 0 0 0 0 0 25 1 2456.2911 Q9ULU4 Q9ULU4 481 505 ZMYND8 Protein kinase C-binding protein 1 no no 3 1.0904E-08 47.806 By MS/MS By matching 1 1 0.42274 0.46666 17.886 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45828 0.52958 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.38996 0.41122 NaN 1 0 Median NaN NaN NaN 0 0 Median 11922000 7926500 3995200 0 0 0 0 0 0 10084000 6882700 3200900 0 0 0 1838100 1043800 794320 0 0 0 32969 4328 34659 172190;172191 173647;173648 173647 2 TGQAPGYSYTAANK KHKTGPNLHGLFGRKTGQAPGYSYTAANKN KTGQAPGYSYTAANKNKGIIWGEDTLMEYL K T G N K N 3 0 1 0 0 1 0 2 0 0 0 1 0 0 1 1 2 0 2 0 0 0 14 0 1427.6681 C9JFR7;P99999 C9JFR7 41 54 CYCS Cytochrome c yes no 2 4.031E-05 85.288 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2714 1.0659 6.7131 5 Median 1.1651 1.0755 4.244 2 0 Median 1.2977 1.0659 NaN 1 0 Median 1.2714 1.2113 NaN 1 0 Median 1.2816 1.0213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116650000 50817000 65832000 32652000 13984000 18667000 30391000 13498000 16893000 20885000 9297800 11588000 32721000 14037000 18684000 0 0 0 0 0 0 32970 696 34660 172192;172193;172194;172195;172196 173649;173650;173651;173652;173653;173654;173655;173656;173657;173658;173659;173660 173660 12 TGQEIPVNVR GPVAGWINALEAYQKTGQEIPVNVRFCLEG EAYQKTGQEIPVNVRFCLEGMEESGSEGLD K T G V R F 0 1 1 0 0 1 1 1 0 1 0 0 0 0 1 0 1 0 0 2 0 0 10 0 1111.5986 Q96KP4;J3QKT2;J3QRH4 Q96KP4 150 159 CNDP2 Cytosolic non-specific dipeptidase yes no 2 0.00044384 106.68 By MS/MS By MS/MS By matching 1 2 1 1.1814 0.99996 4.9175 4 Median 1.037 0.9924 NaN 1 0 Median 1.1814 0.99345 1.9975 2 2 Median NaN NaN NaN 0 0 Median 1.2729 1.0927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37996000 18326000 19670000 10593000 5706000 4887200 26509000 12184000 14325000 0 0 0 894460 436020 458450 0 0 0 0 0 0 32971 3696 34661 172197;172198;172199;172200 173661;173662;173663;173664 173662 4 TGQELQSACDALKDQNSK AEMEEKTSHILSLQKTGQELQSACDALKDQ ELQSACDALKDQNSKLLQDKNEQAVQSAQT K T G S K L 2 0 1 2 1 3 1 1 0 0 2 2 0 0 0 2 1 0 0 0 0 0 18 1 1991.9218 Q14789;E7EU81;H0Y867 Q14789 387 404 GOLGB1 Golgin subfamily B member 1 yes no 3 1.6404E-06 65.47 By MS/MS 1 1.7609 1.6784 NaN 1 Median NaN NaN NaN 0 0 Median 1.7609 1.6784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6152500 2190800 3961700 0 0 0 6152500 2190800 3961700 0 0 0 0 0 0 0 0 0 0 0 0 32972 2900 34662 172201 173665 173665 1 TGQEVVFVAEPDNK ELTPHQTFVRLHNQKTGQEVVFVAEPDNKN KTGQEVVFVAEPDNKNVYKFELDTSERKIE K T G N K N 1 0 1 1 0 1 2 1 0 0 0 1 0 1 1 0 1 0 0 3 0 0 14 0 1531.7518 P04844 P04844 443 456 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 3.6141E-08 118.61 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 0.9274 0.82495 16.648 8 Median 0.74041 0.72943 0.18983 2 0 Median 0.94526 0.84243 10.739 3 0 Median 0.72251 0.74173 30.425 2 0 Median 1.1062 0.93996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105240000 55547000 49691000 38773000 22180000 16593000 35753000 18014000 17739000 25332000 12815000 12517000 5380200 2537500 2842700 0 0 0 0 0 0 32973 1854 34663 172202;172203;172204;172205;172206;172207;172208;172209 173666;173667;173668;173669;173670;173671;173672;173673;173674;173675;173676;173677;173678;173679;173680 173674 15 TGQEVVFVAEPDNKNVYK ELTPHQTFVRLHNQKTGQEVVFVAEPDNKN EVVFVAEPDNKNVYKFELDTSERKIEFDSA K T G Y K F 1 0 2 1 0 1 2 1 0 0 0 2 0 1 1 0 1 0 1 4 0 0 18 1 2036.0215 P04844 P04844 443 460 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2;3 7.7411E-12 139.48 By MS/MS 4 0.89917 0.97593 4.3001 4 Linear 0.89917 0.97593 4.3001 4 3 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64907000 33695000 31212000 64907000 33695000 31212000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32974 1854 34664 172210;172211;172212;172213 173681;173682;173683;173684 173681 4 TGQEYKPGNPPAEIGQNISSNSSASILESK AVKQLLSLKAEYKEKTGQEYKPGNPPAEIG QNISSNSSASILESKSLYDEVAAQGEVVRK K T G S K S 2 0 3 0 0 2 3 3 0 3 1 2 0 0 3 6 1 0 1 0 0 0 30 1 3102.5106 P07814;V9GYZ6 P07814 795 824 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 5.0762E-59 140.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1 0.63967 0.64252 15.021 8 Median 0.60729 0.59383 6.4594 2 0 Median 0.7769 0.74075 6.7507 2 0 Median 0.57129 0.65658 NaN 1 0 Median 0.79012 0.74704 26.998 2 0 Median 0.59471 0.62877 NaN 1 0 Median NaN NaN NaN 0 0 Median 134530000 79063000 55462000 117300000 69046000 48258000 6555600 3571800 2983800 5777000 3631600 2145400 2840600 1587800 1252800 2047700 1226400 821330 0 0 0 32975 1892 34665 172214;172215;172216;172217;172218;172219;172220;172221 173685;173686;173687;173688;173689;173690;173691;173692;173693;173694 173688 10 TGQLFLK TTKPINGAIFIFNPRTGQLFLKIIHTSVWA AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ R T G L K I 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 805.46979 Q6P2Q9 Q6P2Q9 1814 1820 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1.2628 1.1128 10.584 7 Median NaN NaN NaN 0 0 Median 1.2158 1.0697 5.7039 2 0 Median 1.0056 1.1128 NaN 1 0 Median 1.3024 1.1819 NaN 1 0 Median 1.334 1.3987 NaN 1 0 Median 1.2434 1.0521 0.3965 2 0 Median 21918000 9398100 12520000 0 0 0 3909500 1597400 2312200 9108600 3981900 5126700 1614000 750470 863570 4935600 2033300 2902300 2350000 1035100 1314900 32976 3157 34666 172222;172223;172224;172225;172226;172227;172228 173695;173696;173697;173698;173699;173700;173701;173702 173696 8 TGQPMIHIYLDKETGKPK ADFFKQCGVVKMNKRTGQPMIHIYLDKETG PMIHIYLDKETGKPKGDATVSYEDPPTAKA R T G P K G 0 0 0 1 0 1 1 2 1 2 1 3 1 0 2 0 2 0 1 0 0 0 18 2 2055.0823 B0QYK0;Q01844;H7BY36;A0A0D9SFL3;C9JGE3 B0QYK0 355 372 EWSR1 RNA-binding protein EWS yes no 3;4;5 1.8202E-06 71.685 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 7 9 5 2 0.69062 0.76599 41.508 28 Median 0.59621 0.6228 15.984 5 0 Median NaN NaN NaN 0 0 Median 0.67929 0.82863 17.665 7 0 Median 0.86363 0.89509 64.362 9 1 Median 0.63607 0.70912 7.1982 5 0 Median 1.1001 1.1953 7.1769 2 0 Median 258770000 145950000 112820000 37326000 21483000 15842000 0 0 0 75387000 44369000 31018000 102760000 54091000 48668000 41963000 25560000 16403000 1335700 446720 888960 32977 557 34667;34668 172229;172230;172231;172232;172233;172234;172235;172236;172237;172238;172239;172240;172241;172242;172243;172244;172245;172246;172247;172248;172249;172250;172251;172252;172253;172254;172255;172256 173703;173704;173705;173706;173707;173708;173709;173710;173711;173712;173713;173714;173715;173716;173717;173718;173719 173718 218 16 TGQPMINLYTDR ADYFKQIGIIKTNKKTGQPMINLYTDRETG NKKTGQPMINLYTDRETGKLKGEATVSFDD K T G D R E 0 1 1 1 0 1 0 1 0 1 1 0 1 0 1 0 2 0 1 0 0 0 12 0 1407.6816 H3BPE7;P35637 H3BPE7 318 329 FUS RNA-binding protein FUS yes no 2 0.00018773 85.958 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 2 5 3 0.94307 0.86168 16.914 12 Median 0.9393 0.91506 35.506 2 0 Median 0.94307 0.81536 10.454 2 0 Median 0.98494 0.98576 18.197 2 0 Median 1.0233 0.87032 15.837 4 1 Median 0.80065 0.80937 2.8316 2 2 Median NaN NaN NaN 0 0 Median 151010000 83780000 67228000 13100000 7694200 5406200 5533100 2548600 2984500 58523000 30899000 27624000 55019000 32831000 22188000 18832000 9807300 9025200 0 0 0 32978 1221 34669;34670 172257;172258;172259;172260;172261;172262;172263;172264;172265;172266;172267;172268;172269;172270 173720;173721;173722;173723;173724;173725;173726;173727;173728;173729;173730;173731;173732;173733;173734;173735;173736;173737;173738 173720 411 19 TGQPMINLYTDRETGK ADYFKQIGIIKTNKKTGQPMINLYTDRETG GQPMINLYTDRETGKLKGEATVSFDDPPSA K T G G K L 0 1 1 1 0 1 1 2 0 1 1 1 1 0 1 0 3 0 1 0 0 0 16 1 1822.8883 H3BPE7;P35637 H3BPE7 318 333 FUS RNA-binding protein FUS yes no 2;3 4.3781E-10 139.46 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 1 5 7 7 3 0.91236 0.9133 25.538 27 Median 1.0415 1.078 50.144 4 0 Median 1.2372 1.1289 NaN 1 0 Median 0.88843 0.96937 28.18 5 1 Median 1.0153 0.95436 19.22 7 0 Median 0.79465 0.86455 8.887 7 0 Median 1.0686 0.93043 11.531 3 0 Median 421090000 219770000 201320000 80452000 41562000 38890000 1222000 699040 522980 170240000 89812000 80426000 50281000 24686000 25595000 114930000 61167000 53762000 3965500 1842100 2123500 32979 1221 34671;34672 172271;172272;172273;172274;172275;172276;172277;172278;172279;172280;172281;172282;172283;172284;172285;172286;172287;172288;172289;172290;172291;172292;172293;172294;172295;172296;172297 173739;173740;173741;173742;173743;173744;173745;173746;173747;173748;173749;173750;173751;173752;173753;173754;173755;173756;173757;173758;173759;173760;173761;173762;173763;173764;173765;173766;173767;173768;173769;173770;173771 173763 411 33 TGQSLATLHAHK GSKDSQQPIKFWDPKTGQSLATLHAHKNTV DPKTGQSLATLHAHKNTVMEVKLNLNGNWL K T G H K N 2 0 0 0 0 1 0 1 2 0 2 1 0 0 0 1 2 0 0 0 0 0 12 0 1262.6731 Q9C0J8 Q9C0J8 277 288 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 0.02987 20.84 By MS/MS By matching By matching 1 1 1 1.1549 1.067 2.6975 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99542 1.067 NaN 1 0 Median 1.1549 1.0392 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2744 1.0968 NaN 1 0 Median 2497700 1225000 1272700 0 0 0 0 0 0 1578500 827030 751510 338690 169640 169050 0 0 0 580470 228290 352170 32980 3907 34673 172298;172299;172300 173772;173773 173772 2 TGQYSGIYDCAK IYPMEVMKTRLAVGKTGQYSGIYDCAKKIL VGKTGQYSGIYDCAKKILKHEGLGAFYKGY K T G A K K 1 0 0 1 1 1 0 2 0 1 0 1 0 0 0 1 1 0 2 0 0 0 12 0 1361.5922 Q6NUK1 Q6NUK1 321 332 SLC25A24 Calcium-binding mitochondrial carrier protein SCaMC-1 yes yes 2 0.058191 42.395 By MS/MS 1 1.1716 1.0068 NaN 1 Median NaN NaN NaN 0 0 Median 1.1716 1.0068 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2046900 854850 1192100 0 0 0 2046900 854850 1192100 0 0 0 0 0 0 0 0 0 0 0 0 32981 3143 34674 172301 173774 173774 1 TGRLPEAAFLAR FLQGKVDACLELLIRTGRLPEAAFLARTYL LIRTGRLPEAAFLARTYLPSQVSRVVKLWR R T G A R T 3 2 0 0 0 0 1 1 0 0 2 0 0 1 1 0 1 0 0 0 0 0 12 1 1300.7252 P35606 P35606 748 759 COPB2 Coatomer subunit beta yes yes 3 0.00024574 61.11 By MS/MS 2 1.0727 1.1564 18.146 2 Median 1.0727 1.1564 18.146 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9106700 4300300 4806400 9106700 4300300 4806400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 32982 2246 34675 172302;172303 173775 173775 1 TGSAVAPVHPPNR RLLLLESVSGLLQPRTGSAVAPVHPPNRSA PRTGSAVAPVHPPNRSAPHLPGLMCLLRLH R T G N R S 2 1 1 0 0 0 0 1 1 0 0 0 0 0 3 1 1 0 0 2 0 0 13 0 1301.684 Q8IZL8;C9JFV4;I3L445;I3L1P4;I3L4M7 Q8IZL8 49 61 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes no 2;3 0.00013921 80.245 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 0.77145 0.79808 15.691 6 Median NaN NaN NaN 0 0 Median 0.9479 0.8106 NaN 1 1 Median 0.78306 0.79353 NaN 1 0 Median 0.71514 0.61032 NaN 1 1 Median 0.75604 0.79771 0.87415 2 1 Median 1.1963 1.0002 NaN 1 0 Median 11423000 6203300 5220100 0 0 0 2517800 1236900 1281000 487230 337640 149590 981840 666630 315210 6280300 3574900 2705400 1156200 387180 768980 32983 3351 34676 172304;172305;172306;172307;172308;172309;172310;172311 173776;173777;173778;173779;173780;173781;173782 173777 7 TGSEESTMMSYFSK EKKPLKFDFLLAWHKTGSEESTMMSYFSKY KTGSEESTMMSYFSKYQIQEHQPKVALSTL K T G S K Y 0 0 0 0 0 0 2 1 0 0 0 1 2 1 0 4 2 0 1 0 0 0 14 0 1583.6484 O75818;X6RLL4 O75818 186 199 RPP40 Ribonuclease P protein subunit p40 yes no 2 0.0022275 44.188 By matching By MS/MS 1 1 0.95995 0.98913 33.85 2 Median 0.8048 0.77857 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.145 1.2566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3960800 1834800 2126000 1426300 823610 602670 0 0 0 2534500 1011200 1523400 0 0 0 0 0 0 0 0 0 32984 1696 34677 172312;172313 173783;173784 173783 2 TGSETPQAPMSGVGPVSGGPGGFGR PQGPPSQMGSPMGSRTGSETPQAPMSGVGP SGVGPVSGGPGGFGRGSQGGNFEGPNKRRR R T G G R G 1 1 0 0 0 1 1 8 0 0 0 0 1 1 4 3 2 0 0 2 0 0 25 0 2286.0699 Q8WXF1 Q8WXF1 483 507 PSPC1 Paraspeckle component 1 yes yes 2;3 3.8673E-25 109.07 By matching By MS/MS By MS/MS By matching 1 6 1 1 0.49563 0.483 33.611 9 Median 0.53771 0.5138 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45523 0.46159 21.745 6 0 Median 0.57542 0.483 NaN 1 0 Median 1.0695 1.0788 NaN 1 0 Median NaN NaN NaN 0 0 Median 63842000 42442000 21400000 1300900 767810 533060 0 0 0 60380000 40527000 19853000 713500 437610 275890 1447200 708980 738190 0 0 0 32985 3520 34678;34679 172314;172315;172316;172317;172318;172319;172320;172321;172322 173785;173786;173787;173788;173789;173790;173791;173792;173793 173792 1754 9 TGSGLNSFYDQR LQPALLVHWAECLQKTGSGLNSFYDQREYI LQKTGSGLNSFYDQREYIGRSVHYWKKVLP K T G Q R E 0 1 1 1 0 1 0 2 0 0 1 0 0 1 0 2 1 0 1 0 0 0 12 0 1343.6106 P49792 P49792 585 596 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 5.9449E-41 224.64 By matching By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 1.0673 0.99461 20.226 8 Median NaN NaN NaN 0 0 Median 0.98433 0.83891 21.056 2 0 Median 1.0223 1.0896 9.8753 2 0 Median 1.1742 1.0273 14.696 2 0 Median 1.1339 1.1911 NaN 1 0 Median 0.85797 0.7151 NaN 1 0 Median 91387000 44073000 47314000 0 0 0 5381800 3028500 2353400 73904000 35589000 38315000 7478500 3403900 4074600 3060100 1339400 1720700 1562300 712170 850140 32986 2401 34680 172323;172324;172325;172326;172327;172328;172329;172330;172331 173794;173795;173796;173797;173798;173799;173800;173801;173802 173795 9 TGSGLNSFYGQLEYIGR LQPALLVHWAKYLQKTGSGLNSFYGQLEYI SGLNSFYGQLEYIGRSVHYWKKVLPLLKII K T G G R S 0 1 1 0 0 1 1 4 0 1 2 0 0 1 0 2 1 0 2 0 0 0 17 0 1860.9006 Q99666;J3KQ37;O14715;F8W705 Q99666 586 602 RGPD5;RGPD8 RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 yes no 2 0.0020197 36.284 By matching By MS/MS By matching 1 1 1 1.165 1.2232 30.585 3 Plateau 1.0297 1.0226 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3181 1.4631 NaN 1 0 Median 0.91695 0.79616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2993600 1137100 1856500 1199800 536150 663680 0 0 0 1696200 545410 1150800 97565 55494 42071 0 0 0 0 0 0 32987 3762 34681 172332;172333;172334 173803 173803 1 TGSISSSVSVPAKPER HDGEEEEEDDDYGSRTGSISSSVSVPAKPE GSISSSVSVPAKPERRPSLPPSKQANKNLI R T G E R R 1 1 0 0 0 0 1 1 0 1 0 1 0 0 2 5 1 0 0 2 0 0 16 1 1600.842 Q6PJT7;H0YJA2;G3V256;G3V5I6;H0YJ87 Q6PJT7 325 340 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 3 4.2428E-05 58.83 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.67503 0.62961 23.218 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48162 0.52892 4.0586 2 0 Median 0.67503 0.62961 14.782 2 0 Median 0.86519 0.95144 NaN 1 1 Median 0.83834 0.73145 NaN 1 0 Median 16777000 9391400 7385800 0 0 0 0 0 0 6858300 4247800 2610500 2464700 1269800 1194900 6010700 3118000 2892700 1443400 755740 687690 32988 3175 34682 172335;172336;172337;172338;172339;172340;172341 173804;173805;173806;173807 173804 4 TGSPLDHLPIAPSNLPMPEGNSAFTQQVR SALVWHYSLTDSRIKTGSPLDHLPIAPSNL LPMPEGNSAFTQQVRAKLREIEQQIKERGQ K T G V R A 2 1 2 1 0 2 1 2 1 1 3 0 1 1 5 3 2 0 0 1 0 0 29 0 3073.5291 Q93074;Q7Z3Z5 Q93074 390 418 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 yes no 3 0.011031 22.56 By MS/MS 1 0.43303 0.48071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43303 0.48071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2065000 1622600 442400 0 0 0 0 0 0 2065000 1622600 442400 0 0 0 0 0 0 0 0 0 32989 3578 34683 172342 173808 173808 1 TGSQYDIQDAIDK TGSDGSTRVVLVDRKTGSQYDIQDAIDKGL RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS K T G D K G 1 0 0 3 0 2 0 1 0 2 0 1 0 0 0 1 1 0 1 0 0 0 13 0 1452.6733 P15924 P15924 2524 2536 DSP Desmoplakin yes yes 2 0.001702 69.01 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.3171 1.4302 12.847 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4111 1.5396 NaN 1 0 Median 1.3197 1.2542 NaN 1 0 Median 1.2009 1.2622 NaN 1 1 Median 1.3146 1.1325 NaN 1 0 Median 7884600 3203300 4681300 0 0 0 0 0 0 2418200 960320 1457900 1264200 533770 730470 3708800 1467800 2241000 493390 241430 251970 32990 2021 34684 172343;172344;172345;172346 173809;173810 173809 2 TGSYGALAEITASK RKDESPATWRLGLRKTGSYGALAEITASKE KTGSYGALAEITASKEGQKEKDTAGVTRSA K T G S K E 3 0 0 0 0 0 1 2 0 1 1 1 0 0 0 2 2 0 1 0 0 0 14 0 1367.6933 O14974;F8VZN8;H0YIS4;H0YHI8;A0A3B3ISH4 O14974 443 456 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 2 0.00024919 77.593 By MS/MS By MS/MS By matching 1 2 1 1.1038 1.0447 19.422 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99398 1.0705 NaN 1 1 Median 1.1038 0.9415 11.253 2 0 Median NaN NaN NaN 0 0 Median 1.6351 1.3882 NaN 1 0 Median 8712000 4172000 4540000 0 0 0 0 0 0 6505900 3158100 3347800 1993900 911420 1082500 0 0 0 212150 102460 109690 32991 1508 34685 172347;172348;172349;172350 173811;173812;173813 173811 3 TGTAEMSSILEER IAARNFHASNTHLQKTGTAEMSSILEERIL QKTGTAEMSSILEERILGADTSVDLEETGR K T G E R I 1 1 0 0 0 0 3 1 0 1 1 0 1 0 0 2 2 0 0 0 0 0 13 0 1422.6661 P25705;K7ERX7;K7ESA0 P25705 46 58 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 2.6926E-12 175.91 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.1641 1.0488 28.299 8 Median 1.0657 0.99936 7.9444 2 0 Median 1.3838 1.1597 5.7415 3 0 Plateau 0.72828 0.72576 45.135 2 2 Median 1.6106 1.3873 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 173820000 82754000 91061000 106490000 51746000 54740000 45871000 19332000 26539000 19776000 10917000 8859300 1681900 759690 922250 0 0 0 0 0 0 32992 2135 34686;34687 172351;172352;172353;172354;172355;172356;172357;172358 173814;173815;173816;173817;173818;173819;173820;173821;173822 173821 894 9 TGTAYTFFTPNNIK EDYIHRIGRTARSTKTGTAYTFFTPNNIKQ KTGTAYTFFTPNNIKQVSDLISVLREANQA K T G I K Q 1 0 2 0 0 0 0 1 0 1 0 1 0 2 1 0 4 0 1 0 0 0 14 0 1573.7777 J3KTA4;P17844 J3KTA4 438 451 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 1.8E-08 131.28 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 3 5 3 1.1545 0.99412 9.8709 13 Median 1.2686 1.1835 NaN 1 0 Median 1.1268 0.94542 NaN 1 0 Median 1.0281 0.99412 NaN 1 0 Median 1.1756 0.98708 7.278 3 0 Median 1.0718 1.0629 7.208 4 0 Median 1.1843 0.98527 8.5799 3 0 Plateau 236950000 112400000 124550000 24038000 10380000 13658000 8725500 4127700 4597800 133730000 63924000 69804000 6163100 2792900 3370200 59279000 28876000 30403000 5016700 2295200 2721500 32993 1334 34688 172359;172360;172361;172362;172363;172364;172365;172366;172367;172368;172369;172370;172371;172372 173823;173824;173825;173826;173827;173828;173829;173830;173831;173832;173833;173834;173835;173836;173837;173838;173839 173834 17 TGTCGYCGLQFR LGHPKVYINLDKETKTGTCGYCGLQFRQHH ETKTGTCGYCGLQFRQHHH___________ K T G F R Q 0 1 0 0 2 1 0 3 0 0 1 0 0 1 0 0 2 0 1 0 0 0 12 0 1418.6071 O75380 O75380 109 120 NDUFS6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial yes yes 2 0.00055381 75.378 By MS/MS 1 1.5955 1.3535 NaN 1 Median NaN NaN NaN 0 0 Median 1.5955 1.3535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5439200 2196100 3243100 0 0 0 5439200 2196100 3243100 0 0 0 0 0 0 0 0 0 0 0 0 32994 1666 34689 172373 173840;173841 173841 2 TGTGTLSVFGMQAR QIQHILRCGVRKDDRTGTGTLSVFGMQARY RTGTGTLSVFGMQARYSLRDEFPLLTTKRV R T G A R Y 1 1 0 0 0 1 0 3 0 0 1 0 1 1 0 1 3 0 0 1 0 0 14 0 1424.7082 P04818 P04818 51 64 TYMS Thymidylate synthase yes yes 2 1.895E-08 125.75 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 2 1 1.2972 1.1665 41.255 8 Median 1.2484 1.1665 1.3623 2 0 Median 0.95946 0.84004 57.022 2 0 Median 1.3906 1.3733 NaN 1 0 Median 1.4127 1.184 7.8132 2 0 Median NaN NaN NaN 0 0 Median 0.53898 0.46173 NaN 1 0 Median 124330000 52918000 71412000 113360000 48267000 65089000 1751600 744590 1007000 6279900 2599600 3680200 1919500 758610 1160900 0 0 0 1023300 548500 474840 32995 1852 34690;34691 172374;172375;172376;172377;172378;172379;172380;172381 173842;173843;173844;173845;173846;173847;173848 173844 615 7 TGTITTFEHAHNMR GNIVGLVGVDQFLVKTGTITTFEHAHNMRV KTGTITTFEHAHNMRVMKFSVSPVVRVAVE K T G M R V 1 1 1 0 0 0 1 1 2 1 0 0 1 1 0 0 4 0 0 0 0 0 14 0 1614.7573 P13639 P13639 482 495 EEF2 Elongation factor 2 yes yes 2;3;4 1.2278E-48 168.74 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 18 5 13 2 2 0.98236 0.89729 33.626 54 Median 1.0576 1.0516 27.482 15 0 Median 1.0073 0.8721 39.148 18 2 Median 1.1738 1.239 15.255 5 1 Median 0.89037 0.75587 13.993 12 0 Median 1.1529 1.1752 33.034 2 1 Median 0.70666 0.59092 1.7446 2 2 Median 957260000 455820000 501440000 388510000 174460000 214050000 384000000 195600000 188400000 84375000 37145000 47230000 84261000 42260000 42000000 11362000 3806700 7555500 4743100 2539400 2203700 32996 1992 34692;34693 172382;172383;172384;172385;172386;172387;172388;172389;172390;172391;172392;172393;172394;172395;172396;172397;172398;172399;172400;172401;172402;172403;172404;172405;172406;172407;172408;172409;172410;172411;172412;172413;172414;172415;172416;172417;172418;172419;172420;172421;172422;172423;172424;172425;172426;172427;172428;172429;172430;172431;172432;172433;172434;172435;172436;172437 173849;173850;173851;173852;173853;173854;173855;173856;173857;173858;173859;173860;173861;173862;173863;173864;173865;173866;173867;173868;173869;173870;173871;173872;173873;173874;173875;173876;173877;173878;173879;173880;173881;173882;173883;173884;173885;173886;173887;173888;173889;173890;173891;173892;173893;173894;173895;173896;173897;173898;173899;173900;173901;173902;173903;173904;173905;173906;173907;173908;173909;173910;173911;173912;173913;173914 173863 777 65 TGTIVVEGHELHDEDIR SIKQLSSEELEQFQKTGTIVVEGHELHDED TIVVEGHELHDEDIRLMYTFDQATGGTAQF K T G I R L 0 1 0 2 0 0 3 2 2 2 1 0 0 0 0 0 2 0 0 2 0 0 17 0 1918.9385 P41252;A0A0A0MSX9;J3KR24 P41252 930 946 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3;4 9.933E-07 84.874 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.0303 1.0014 10.263 6 Median 1.0303 0.99226 2.3393 2 0 Median 1.3373 1.1199 NaN 1 0 Median 0.82923 0.912 15.356 2 2 Median 1.1687 0.99406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58710000 27778000 30932000 32555000 15131000 17423000 9162100 4082600 5079500 13970000 7178700 6791800 3022900 1385000 1637900 0 0 0 0 0 0 32997 2302 34694 172438;172439;172440;172441;172442;172443 173915;173916;173917;173918;173919;173920 173916 5 TGTLQPWNSDSTLNSR STIETVPYWTRSRRKTGTLQPWNSDSTLNS GTLQPWNSDSTLNSRQLEPRTETDSVGTPQ K T G S R Q 0 1 2 1 0 1 0 1 0 0 2 0 0 0 1 3 3 1 0 0 0 0 16 0 1775.8438 Q9H0H5;F8VRD2;H0YIK5 Q9H0H5 249 264 RACGAP1 Rac GTPase-activating protein 1 yes no 2 4.8589E-10 106.01 By MS/MS 1 0.84602 0.86184 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84602 0.86184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11031000 6079000 4952000 0 0 0 0 0 0 11031000 6079000 4952000 0 0 0 0 0 0 0 0 0 32998 3926 34695 172444 173921;173922 173922 2 TGTLTTNQMSVCR SVETLGCTSVICSDKTGTLTTNQMSVCRMF DKTGTLTTNQMSVCRMFILDRVEGDTCSLN K T G C R M 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 1 4 0 0 1 0 0 13 0 1467.681 P16615;H7C5W9;Q93084 P16615 353 365 ATP2A2;ATP2A3 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 yes no 2 1.7216E-30 173.24 By MS/MS 2 1.5914 1.3001 30.368 2 Median NaN NaN NaN 0 0 Median 1.5914 1.3001 30.368 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18525000 8375700 10149000 0 0 0 18525000 8375700 10149000 0 0 0 0 0 0 0 0 0 0 0 0 32999 2031 34696 172445;172446 173923;173924 173923 2 TGTLVEEAFWIDK VRPFTLGQLKELLGRTGTLVEEAFWIDKIK GRTGTLVEEAFWIDKIKSHCFVTYSTVEEA R T G D K I 1 0 0 1 0 0 2 1 0 1 1 1 0 1 0 0 2 1 0 1 0 0 13 0 1507.7559 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 977 989 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.011536 35.414 By MS/MS 1 1.063 1.0954 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.063 1.0954 NaN 1 0 Median NaN NaN NaN 0 0 Median 5795900 2918400 2877500 0 0 0 0 0 0 0 0 0 0 0 0 5795900 2918400 2877500 0 0 0 33000 4560 34697 172447 173925 173925 1 TGTQYLLR DIHQGFQSLLTEVNKTGTQYLLRMANRLFG LLTEVNKTGTQYLLRMANRLFGEKSCDFLS K T G L R M 0 1 0 0 0 1 0 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 8 0 950.51853 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7;C9JTJ8;C9JVA8;H7BXK7;A0A1B0GU38;P50452 A0A024QZX5 86 93 SERPINB6;SERPINB8 Serpin B6;Serpin B8 yes no 2 0.0033929 98.418 By MS/MS By MS/MS 3 1 1.4355 1.2284 101.05 4 Median NaN NaN NaN 0 0 Median 1.2887 1.124 25.425 3 0 Median 7.1415 7.7371 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18598000 6968400 11630000 0 0 0 14814000 6465200 8349200 3783700 503180 3280500 0 0 0 0 0 0 0 0 0 33001 1 34698 172448;172449;172450;172451 173926;173927;173928 173928 3 TGTTIAGVVYK ADFAKRGYKLPKVRKTGTTIAGVVYKDGIV KVRKTGTTIAGVVYKDGIVLGADTRATEGM K T G Y K D 1 0 0 0 0 0 0 2 0 1 0 1 0 0 0 0 3 0 1 2 0 0 11 0 1108.6128 Q99436;Q5TBG5 Q99436 42 52 PSMB7 Proteasome subunit beta type-7;Proteasome subunit beta type yes no 2 0.0016986 57.59 By MS/MS By MS/MS By matching 1 1 1 1.3114 1.1603 14.969 2 Median 1.1179 1.0437 NaN 1 0 Median 1.5384 1.2898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12964000 5554500 7409000 8033800 3861300 4172600 4488900 1317900 3171000 0 0 0 0 0 0 0 0 0 440800 375410 65391 33002 3744 34699 172452;172453;172454 173929;173930;173931;173932 173929 4 TGTVMDTKVDELTTEIK QKELSQLQAAQEKQKTGTVMDTKVDELTTE TVMDTKVDELTTEIKELKETLEEKTKEADE K T G I K E 0 0 0 2 0 0 2 1 0 1 1 2 1 0 0 0 5 0 0 2 0 0 17 1 1879.9449 P49454 P49454 2828 2844 CENPF Centromere protein F yes yes 3 0.00093894 34.498 By MS/MS 1 0.63376 0.71888 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63376 0.71888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8421500 4839900 3581600 0 0 0 0 0 0 8421500 4839900 3581600 0 0 0 0 0 0 0 0 0 33003 2383 34700 172455 173933 173933 1 TGTVSLEVR VFEDVVLHQATILPKTGTVSLEVRLLEASR ATILPKTGTVSLEVRLLEASRAFEVSENGN K T G V R L 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 2 0 0 9 0 960.52401 P49327;A0A0U1RQF0 P49327 928 936 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 4.297E-07 164.53 By MS/MS By MS/MS By matching By MS/MS 2 3 1 3 1.3512 1.1516 55.877 9 Plateau 1.0912 1.0393 11.186 2 0 Median 1.4269 1.1391 5.0426 3 0 Median 0.97239 1.0803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42213 0.36089 15.395 3 1 Median 180940000 80071000 100870000 43458000 19578000 23880000 125900000 53031000 72864000 2440400 1360800 1079600 0 0 0 0 0 0 9143600 6100400 3043200 33004 2377 34701 172456;172457;172458;172459;172460;172461;172462;172463;172464 173934;173935;173936;173937;173938;173939;173940;173941;173942;173943;173944;173945 173934 12 TGVAPDVFAENMK ITASLCDLKSRLDSRTGVAPDVFAENMKLR SRTGVAPDVFAENMKLREDTHHLVNYIPQG R T G M K L 2 0 1 1 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 2 0 0 13 0 1377.6599 Q01581 Q01581 416 428 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 2 0.0021182 56.359 By MS/MS By MS/MS 1 1 0.65635 0.64557 24.294 2 Median 0.57573 0.54367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74827 0.76657 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8087500 4714700 3372800 4978400 2926900 2051500 0 0 0 3109100 1787800 1321300 0 0 0 0 0 0 0 0 0 33005 2687 34702;34703 172465;172466 173946;173947;173948 173946 1385 3 TGVAVNKPAEFTVDAK FHPDRVKARGPGLEKTGVAVNKPAEFTVDA GVAVNKPAEFTVDAKHGGKAPLRVQVQDNE K T G A K H 3 0 1 1 0 0 1 1 0 0 0 2 0 1 1 0 2 0 0 3 0 0 16 1 1645.8675 P21333;Q60FE5;A0A087WWY3 P21333 685 700 FLNA Filamin-A no no 2;3 6.1534E-27 203.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 4 5 1 3 0.80777 0.79178 27.523 28 Median 0.95094 1.0062 15.341 7 0 Median 0.79566 0.7564 4.2819 8 0 Median 0.84029 0.97785 52.261 4 1 Median 0.67736 0.68816 12.165 5 0 Median 1.0548 1.1388 NaN 1 0 Median 0.69765 0.63027 40.197 3 0 Median 1980900000 1035300000 945620000 696910000 349120000 347790000 1071100000 569070000 502040000 157530000 87143000 70383000 39118000 21724000 17394000 11373000 5357200 6015700 4850900 2849000 2001900 33006 2088;3120 34704 172467;172468;172469;172470;172471;172472;172473;172474;172475;172476;172477;172478;172479;172480;172481;172482;172483;172484;172485;172486;172487;172488;172489;172490;172491;172492;172493;172494 173949;173950;173951;173952;173953;173954;173955;173956;173957;173958;173959;173960;173961;173962;173963;173964;173965;173966;173967;173968;173969;173970;173971;173972;173973;173974;173975;173976;173977;173978;173979;173980;173981;173982;173983;173984;173985;173986;173987;173988;173989;173990 173972 42 TGVELGKPTHFTVNAK HDASKVKAEGPGLSRTGVELGKPTHFTVNA GVELGKPTHFTVNAKAAGKGKLDVQFSGLT R T G A K A 1 0 1 0 0 0 1 2 1 0 1 2 0 1 1 0 3 0 0 2 0 0 16 1 1697.9101 P21333;Q60FE5;A0A087WWY3 P21333 885 900 FLNA Filamin-A no no 2;3;4 2.3488E-58 232.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 10 7 6 5 1 1 0.92907 0.87846 22.59 29 Median 0.98068 1.0348 25.894 9 1 Median 0.84273 0.80689 4.4245 7 0 Median 0.86713 0.99949 15.408 6 0 Median 0.89936 0.84755 6.998 5 0 Median 1.8209 1.9614 NaN 1 1 Median 1.0923 0.98677 NaN 1 0 Median 1521300000 784820000 736460000 513090000 248180000 264910000 896180000 480960000 415210000 78208000 39387000 38821000 23615000 12352000 11263000 8617200 3102500 5514600 1574400 834010 740370 33007 2088;3120 34705 172495;172496;172497;172498;172499;172500;172501;172502;172503;172504;172505;172506;172507;172508;172509;172510;172511;172512;172513;172514;172515;172516;172517;172518;172519;172520;172521;172522;172523;172524 173991;173992;173993;173994;173995;173996;173997;173998;173999;174000;174001;174002;174003;174004;174005;174006;174007;174008;174009;174010;174011;174012;174013;174014;174015;174016;174017;174018;174019;174020;174021;174022;174023;174024;174025;174026;174027;174028;174029;174030;174031;174032;174033 173996 43 TGVEVGKPTHFTVLTK HDASKVKAEGPGLNRTGVEVGKPTHFTVLT GVEVGKPTHFTVLTKGAGKAKLDVQFAGTA R T G T K G 0 0 0 0 0 0 1 2 1 0 1 2 0 1 1 0 4 0 0 3 0 0 16 1 1712.9461 Q14315 Q14315 880 895 FLNC Filamin-C yes yes 2;3;4 3.0349E-19 188.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 2 3 3 1.0981 1.0473 28.727 19 Median 1.1328 1.2325 16.138 5 1 Median 0.89737 0.86185 16.1 6 1 Median 1.6822 1.9458 1.7992 2 1 Median 1.2964 1.2115 10.597 3 0 Median NaN NaN NaN 0 0 Median 1.106 0.98692 12.43 3 0 Plateau 444070000 231770000 212300000 156190000 74494000 81692000 261370000 145920000 115440000 18388000 7586800 10801000 6489800 3047300 3442500 0 0 0 1640500 720460 920040 33008 2871 34706 172525;172526;172527;172528;172529;172530;172531;172532;172533;172534;172535;172536;172537;172538;172539;172540;172541;172542;172543 174034;174035;174036;174037;174038;174039;174040;174041;174042;174043;174044;174045;174046;174047;174048;174049;174050;174051;174052;174053;174054 174050 21 TGVHHYSGNNIELGTACGK ALRKSEIEYYAMLAKTGVHHYSGNNIELGT HYSGNNIELGTACGKYYRVCTLAIIDPGDS K T G G K Y 1 0 2 0 1 0 1 4 2 1 1 1 0 0 0 1 2 0 1 1 0 0 19 0 2013.9327 E5RI99;P62888;A0A0B4J213 E5RI99 69 87 RPL30 60S ribosomal protein L30 yes no 2;3;4 4.4048E-21 166.9 By MS/MS By MS/MS By MS/MS 3 5 2 1.1907 1.0278 8.5942 10 Median 1.1355 1.0734 8.2327 3 0 Plateau 1.2071 0.99311 4.8104 5 0 Median 1.224 1.1849 2.0784 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 285510000 124640000 160870000 6817400 3295800 3521500 266970000 116150000 150820000 11727000 5198600 6528500 0 0 0 0 0 0 0 0 0 33009 849 34707 172544;172545;172546;172547;172548;172549;172550;172551;172552;172553 174055;174056;174057;174058;174059;174060;174061;174062;174063;174064;174065;174066;174067;174068;174069;174070 174068 16 TGVQTFR NSEDKSIRVWDMSKRTGVQTFRRDHDRFWV RVWDMSKRTGVQTFRRDHDRFWVLAAHPNL R T G F R R 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 7 0 807.4239 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89;A0A3B3ITV3;A0A3B3ISK1 P53621 282 288 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.008794 85.265 By matching By MS/MS 1 2 1.0476 0.88293 27.339 3 Median 0.78906 0.76362 NaN 1 0 Median 1.2484 1.0698 27.15 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7217500 3501300 3716200 535720 302780 232950 6681700 3198500 3483200 0 0 0 0 0 0 0 0 0 0 0 0 33010 2473 34708 172554;172555;172556 174071 174071 1 TGVVPQLVK YLTDGPNERIGMVVKTGVVPQLVKLLGASE IGMVVKTGVVPQLVKLLGASELPIVTPALR K T G V K L 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 3 0 0 9 0 939.57532 P52292 P52292 292 300 KPNA2 Importin subunit alpha-1 yes yes 2 0.0036618 63.565 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1.0955 1.0332 20.175 10 Median 1.1911 1.1346 NaN 1 0 Median 1.0723 0.92473 2.2144 2 0 Median 1.1619 1.1553 2.8191 2 0 Median 1.0538 0.9213 3.2306 2 0 Median 1.4479 1.4287 9.7314 2 0 Median 0.97186 0.79847 NaN 1 0 Median 47610000 21465000 26145000 3558600 1547000 2011600 4008000 1994200 2013800 15621000 6279900 9341200 11033000 5440300 5592400 6803900 2870800 3933100 6585700 3332600 3253100 33011 2448 34709 172557;172558;172559;172560;172561;172562;172563;172564;172565;172566 174072;174073;174074;174075;174076;174077;174078;174079 174077 8 TGYESGEYEMLGEGLGVK TKGLDFSDRIGKTKRTGYESGEYEMLGEGL ESGEYEMLGEGLGVKETPQQKYQRLLHEVQ R T G V K E 0 0 0 0 0 0 4 5 0 0 2 1 1 0 0 1 1 0 2 1 0 0 18 0 1917.8666 Q13561;F8W1I6;F8VW18;F8VX93;F8VRV7;H0YHL1 Q13561 79 96 DCTN2 Dynactin subunit 2 yes no 2 2.9175E-06 80.469 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1252 1.0255 22.167 4 Median 1.0466 0.98911 NaN 1 0 Median 1.2096 1.0633 NaN 1 0 Median 0.9662 0.94119 NaN 1 0 Median 1.7685 1.5349 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13544000 6669700 6874300 4796900 2354700 2442200 845320 315940 529380 7798800 3966800 3832000 103010 32297 70709 0 0 0 0 0 0 33012 2824 34710 172567;172568;172569;172570 174080;174081;174082;174083 174083 4 TGYGGGFNER CNMCNTPKYAKLEERTGYGGGFNERENVEY KLEERTGYGGGFNERENVEYIEREESDGEY R T G E R E 0 1 1 0 0 0 1 4 0 0 0 0 0 1 0 0 1 0 1 0 0 0 10 0 1056.4625 O95218 O95218 100 109 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2 0.0093173 45.368 By matching By MS/MS By matching 1 1 1 1.1887 1.111 9.3786 3 Plateau NaN NaN NaN 0 0 Median 1.1664 1.0079 NaN 1 0 Median 1.1887 1.1976 NaN 1 0 Median 1.1843 1.0307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5928000 2810500 3117500 0 0 0 940470 403860 536610 2865900 1412300 1453500 2121700 994290 1127400 0 0 0 0 0 0 33013 1755 34711 172571;172572;172573 174084 174084 1 TGYGVEELISALQR WSRTVVRDVRLISAKTGYGVEELISALQRS KTGYGVEELISALQRSWRYRGDVYLVGATN K T G Q R S 1 1 0 0 0 1 2 2 0 1 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1534.7991 Q8NC60 Q8NC60 320 333 NOA1 Nitric oxide-associated protein 1 yes yes 2 0.054664 23.851 By MS/MS 1 1.4436 1.2872 NaN 1 Median NaN NaN NaN 0 0 Median 1.4436 1.2872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1114600 446320 668310 0 0 0 1114600 446320 668310 0 0 0 0 0 0 0 0 0 0 0 0 33014 3416 34712 172574 174085 174085 1 TGYNFQR VSGADNGTMHLWDWRTGYNFQRVHAAVQPG TMHLWDWRTGYNFQRVHAAVQPGSLDSESG R T G Q R V 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 7 0 884.41407 O43660 O43660 443 449 PLRG1 Pleiotropic regulator 1 yes yes 2 0.017766 64.776 By MS/MS By matching 1 1 1.1894 1.1347 12.881 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98436 1.036 NaN 1 0 Median 1.4372 1.243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866800 1342700 1524000 0 0 0 0 0 0 1961300 949320 1011900 905530 393420 512110 0 0 0 0 0 0 33015 1580 34713 172575;172576 174086 174086 1 TGYTLDVTTGQR TKGPDEAKIKALLERTGYTLDVTTGQRKYG LERTGYTLDVTTGQRKYGGPPPDSVYSGVQ R T G Q R K 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 4 0 1 1 0 0 12 0 1310.6466 B7Z645;O43390;O60506;F6UXX1 O43390 134 145 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 3.0296E-42 190.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 7 8 7 1.1894 1.0612 22.564 32 Median 1.2009 1.1304 21.129 4 0 Median 1.5846 1.3687 33.369 4 1 Median 1.1496 1.112 7.0441 4 2 Median 1.232 1.062 31.936 7 2 Median 1.0499 1.0604 4.1583 7 0 Median 1.1888 0.96507 17.149 6 1 Median 1490600000 684770000 805820000 71920000 32462000 39459000 39633000 12371000 27263000 579750000 276930000 302820000 110330000 50001000 60329000 508830000 231130000 277710000 180120000 81883000 98234000 33016 1568;1619;634 34714 172577;172578;172579;172580;172581;172582;172583;172584;172585;172586;172587;172588;172589;172590;172591;172592;172593;172594;172595;172596;172597;172598;172599;172600;172601;172602;172603;172604;172605;172606;172607;172608;172609;172610;172611 174087;174088;174089;174090;174091;174092;174093;174094;174095;174096;174097;174098;174099;174100;174101;174102;174103;174104;174105;174106;174107;174108;174109;174110;174111;174112;174113;174114;174115;174116;174117;174118;174119;174120;174121;174122;174123;174124;174125;174126;174127;174128;174129;174130;174131;174132;174133;174134;174135;174136;174137 174099 51 TGYTLDVTTGQRK TKGPDEAKIKALLERTGYTLDVTTGQRKYG ERTGYTLDVTTGQRKYGGPPPDSVYSGVQP R T G R K Y 0 1 0 1 0 1 0 2 0 0 1 1 0 0 0 0 4 0 1 1 0 0 13 1 1438.7416 B7Z645;O43390;O60506;F6UXX1 O43390 134 146 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2;3 7.3494E-07 107.24 By MS/MS By matching 8 2 1.274 1.2776 19.514 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.165 1.2776 15.873 8 0 Median 1.7958 1.6014 34.462 2 0 Median 37924000 16558000 21366000 0 0 0 0 0 0 0 0 0 0 0 0 33817000 14919000 18899000 4107200 1639600 2467500 33017 1568;1619;634 34715 172612;172613;172614;172615;172616;172617;172618;172619;172620;172621 174138;174139;174140;174141;174142;174143 174138 6 TGYTPDEKLR ______________________________ ______________________________ M T G L R L 0 1 0 1 0 0 1 1 0 0 1 1 0 0 1 0 2 0 1 0 0 0 10 1 1178.5932 O95139;A0A087WZX2 O95139 2 11 NDUFB6 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 yes no 2 0.0044289 72.643 By MS/MS By MS/MS 1 1 1.0079 0.93959 32.132 2 Median 0.75995 0.74863 NaN 1 1 Median 1.3367 1.1793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17163000 9977000 7186300 15581000 9288900 6291800 1582600 688050 894530 0 0 0 0 0 0 0 0 0 0 0 0 33018 1746 34716 172622;172623 174144;174145 174145 2 THAVILSR SRLQCTYIEVEQVSKTHAVILSRPSWLWGA EVEQVSKTHAVILSRPSWLWGAEMGANEHG K T H S R P 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 1 0 0 8 0 895.52395 J3KT79;J3QR84;J3QRJ1;J3QL71;Q96FV2 J3KT79 70 77 SCRN2 Secernin-2 yes no 2 0.042262 36.395 By MS/MS 1 1.684 1.4425 NaN 1 Median NaN NaN NaN 0 0 Median 1.684 1.4425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1268600 440890 827700 0 0 0 1268600 440890 827700 0 0 0 0 0 0 0 0 0 0 0 0 33019 1333 34717 172624 174146 174146 1 THAVLVALK EAVKQGSATVGLKSKTHAVLVALKRAQSEL VGLKSKTHAVLVALKRAQSELAAHQKKILH K T H L K R 2 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 950.5913 P25786;F5GX11;B4DEV8 P25786 42 50 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2 0.00063785 107.9 By MS/MS By MS/MS 1 2 1.2448 1.0446 2.9233 3 Median 1.1345 1.0372 NaN 1 0 Median 1.2684 1.0693 3.3042 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23558000 10635000 12923000 15886000 7105100 8781400 7671100 3529600 4141500 0 0 0 0 0 0 0 0 0 0 0 0 33020 2136 34718 172625;172626;172627 174147;174148;174149;174150;174151 174148 5 THAVLVALKR EAVKQGSATVGLKSKTHAVLVALKRAQSEL GLKSKTHAVLVALKRAQSELAAHQKKILHV K T H K R A 2 1 0 0 0 0 0 0 1 0 2 1 0 0 0 0 1 0 0 2 0 0 10 1 1106.6924 P25786;F5GX11;B4DEV8 P25786 42 51 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type yes no 2 4.4758E-22 198.07 By MS/MS By MS/MS 1 2 1.2748 1.1864 6.451 3 Median 1.0701 1.0698 NaN 1 0 Median 1.3004 1.1954 1.0702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11966000 5448400 6517500 6579800 3162800 3417000 5386100 2285500 3100600 0 0 0 0 0 0 0 0 0 0 0 0 33021 2136 34719 172628;172629;172630 174152;174153;174154;174155;174156;174157 174152 6 THAYGWESEAAMER MLPYLINYYGNPHSRTHAYGWESEAAMERA RTHAYGWESEAAMERARQQVASLIGADPRE R T H E R A 3 1 0 0 0 0 3 1 1 0 0 0 1 0 0 1 1 1 1 0 0 0 14 0 1636.694 Q9Y697;F2Z2E7;F8WER8;A2A2M1;F8WB23;Q8WV90 Q9Y697 92 105 NFS1 Cysteine desulfurase, mitochondrial yes no 3 0.0039944 41.542 By MS/MS By MS/MS 1 1 0.9135 0.7863 29.243 2 Median NaN NaN NaN 0 0 Median 1.1304 0.96692 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73819 0.63942 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7216400 2735400 4481100 0 0 0 1883600 833050 1050600 0 0 0 5332800 1902300 3430500 0 0 0 0 0 0 33022 4484 34720 172631;172632 174158;174159;174160 174158 3 THDHQLESSLSPVEVFAK TRSEIIDEKGPVMSKTHDHQLESSLSPVEV HQLESSLSPVEVFAKTSASLEMNQGVSEER K T H A K T 1 0 0 1 0 1 2 0 2 0 2 1 0 1 1 3 1 0 0 2 0 0 18 0 2023.0011 Q9H410;Q5JW53 Q9H410 20 37 DSN1 Kinetochore-associated protein DSN1 homolog yes no 3 8.2562E-05 40.844 By MS/MS 1 0.8333 0.87248 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8333 0.87248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6767800 3726600 3041200 0 0 0 0 0 0 6767800 3726600 3041200 0 0 0 0 0 0 0 0 0 33023 3960 34721 172633 174161;174162 174162 2 THDMFVADNGKPVPLDEESHK QKHSVHTLVFRSLKRTHDMFVADNGKPVPL ADNGKPVPLDEESHKRKMAIKLRNEYGPVL R T H H K R 1 0 1 3 0 0 2 1 2 0 1 2 1 1 2 1 1 0 0 2 0 0 21 1 2365.1009 O43660;D6RA26;B7Z982 O43660 21 41 PLRG1 Pleiotropic regulator 1 yes no 4 5.3846E-09 55.763 By MS/MS 1 0.64701 0.67615 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64701 0.67615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8840200 5332400 3507800 0 0 0 0 0 0 8840200 5332400 3507800 0 0 0 0 0 0 0 0 0 33024 1580 34722 172634 174163 174163 1 THEAEIVEGENHTYCIR SIQDMTAQVTSPSGKTHEAEIVEGENHTYC EAEIVEGENHTYCIRFVPAEMGTHTVSVKY K T H I R F 1 1 1 0 1 0 4 1 2 2 0 0 0 0 0 0 2 0 1 1 0 0 17 0 2056.9273 P21333;H0Y5C6;Q60FE5 P21333 2185 2201 FLNA Filamin-A no no 3;4 1.905E-24 181.51 By MS/MS 2 0.86948 0.69509 13.356 2 Median NaN NaN NaN 0 0 Median 0.86948 0.69509 13.356 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65414000 33343000 32070000 0 0 0 65414000 33343000 32070000 0 0 0 0 0 0 0 0 0 0 0 0 33025 2088;3120 34723 172635;172636 174164;174165;174166;174167 174164 4 THEAQIQEMR QEVNILKKTLEEEAKTHEAQIQEMRQKHSQ EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T H M R Q 1 1 0 0 0 2 2 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1241.5823 P35579 P35579 1182 1191 MYH9 Myosin-9 yes yes 2;3 0.00032281 121.73 By MS/MS By MS/MS By MS/MS 2 4 2 1.0973 0.93167 19.558 7 Median 1.2228 1.2153 0.93051 2 0 Median 1.1489 0.97342 9.5483 4 0 Linear 0.6666 0.74357 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66385000 31418000 34967000 4951400 2257900 2693500 60746000 28666000 32080000 687570 493460 194100 0 0 0 0 0 0 0 0 0 33026 2244 34724 172637;172638;172639;172640;172641;172642;172643;172644 174168;174169;174170;174171;174172;174173;174174;174175;174176;174177;174178;174179;174180 174173 13 THEDIEAQIR ______________________________ AKIAKTHEDIEAQIREIQGKKAALDEAQGV K T H I R E 1 1 0 1 0 1 2 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1210.5942 O75533;B4DGZ4;A0A494C1M2;F8WC19 O75533 7 16 SF3B1 Splicing factor 3B subunit 1 yes no 2;3 0.00010552 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 4 7 1.1444 1.0449 26.258 19 Median 1.1356 1.1348 0.62079 2 0 Median 1.4364 1.2128 21.073 2 0 Median 1.2372 1.3608 9.957 2 0 Median 1.1478 0.97694 9.3459 3 1 Median 1.2478 1.3171 30.079 3 0 Median 1.0502 0.82216 12.413 7 0 Median 77602000 35627000 41975000 3078500 1306000 1772500 16611000 7462900 9148600 12042000 5643600 6398200 10135000 4450600 5684300 27762000 12792000 14969000 7973700 3971500 4002200 33027 1683 34725 172645;172646;172647;172648;172649;172650;172651;172652;172653;172654;172655;172656;172657;172658;172659;172660;172661;172662;172663;172664 174181;174182;174183;174184;174185;174186;174187;174188;174189;174190;174191;174192;174193;174194;174195;174196;174197;174198;174199;174200;174201;174202;174203;174204;174205;174206;174207 174197 27 THFDYQFGYR RGRGRGRGRGRGGTRTHFDYQFGYRKFDGV RGGTRTHFDYQFGYRKFDGVEGPRTPKYMN R T H Y R K 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 1 0 2 0 0 0 10 0 1332.5887 Q6PKG0;A0A0B4J210;E5RH50 Q6PKG0 357 366 LARP1 La-related protein 1 yes no 2;3 0.00011196 114.89 By MS/MS By MS/MS 2 2 1.2056 1.1149 20.124 4 Median 1.3307 1.2843 12.906 2 0 Median 1.1032 0.9596 14.104 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20211000 8347900 11863000 17172000 6896700 10276000 3038600 1451200 1587300 0 0 0 0 0 0 0 0 0 0 0 0 33028 3176 34726 172665;172666;172667;172668 174208;174209;174210;174211 174210 4 THFNKGPSYGLSAEVK ______________________________ HFNKGPSYGLSAEVKNKIASKYDHQAEEDL M T H V K N 1 0 1 0 0 0 1 2 1 0 1 2 0 1 1 2 1 0 1 1 0 0 16 1 1733.8737 Q15417 Q15417 2 17 CNN3 Calponin-3 yes yes 2;3 5.5549E-10 125.82 By MS/MS By MS/MS 5 1 1.0288 0.94891 22.239 6 Median 0.97184 0.90533 24.83 5 0 Median 1.0892 0.9946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96856000 48079000 48777000 88870000 44423000 44447000 7986200 3655900 4330300 0 0 0 0 0 0 0 0 0 0 0 0 33029 2950 34727 172669;172670;172671;172672;172673;172674 174212;174213;174214;174215;174216;174217;174218;174219;174220 174215 9 THGSEIINDLQGR FINLQSALESERRDRTHGSEIINDLQGRIC DRTHGSEIINDLQGRICGLEEDLKNGKILL R T H G R I 0 1 1 1 0 1 1 2 1 2 1 0 0 0 0 1 1 0 0 0 0 0 13 0 1438.7165 O75116;E9PF63 O75116 635 647 ROCK2 Rho-associated protein kinase 2 yes no 3 0.00016215 77.597 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33030 1644 34728 172675 174221 174221 1 THHNDTELIR ESASLVASGKAELIKTHHNDTELIRKLREE AELIKTHHNDTELIRKLREEGKVIEPLKDF K T H I R K 0 1 1 1 0 0 1 0 2 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1234.6054 P49915 P49915 390 399 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2;3 0.0001472 73.499 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 3 1 1.0655 0.97267 17.395 12 Median 1.0025 0.99943 5.1488 2 0 Median 1.0696 0.93585 7.4383 4 0 Median 1.0873 1.1371 1.7902 2 0 Median 1.0729 0.89948 15.89 3 0 Median 1.422 1.4825 NaN 1 0 Median NaN NaN NaN 0 0 Median 17695000 8229000 9466200 1491500 704320 787210 11775000 5457300 6317700 3760600 1766500 1994100 449910 216060 233850 218120 84805 133310 0 0 0 33031 2405 34729 172676;172677;172678;172679;172680;172681;172682;172683;172684;172685;172686;172687 174222;174223;174224;174225;174226;174227;174228;174229;174230 174228 9 THIDTVINALK MCTLASSEFSHEAVKTHIDTVINALKTERD EAVKTHIDTVINALKTERDVSVRQRAADLL K T H L K T 1 0 1 1 0 0 0 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1223.6874 O95782 O95782 368 378 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.00018924 102.62 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0059 0.88951 15.062 4 Median 1.1699 1.1336 NaN 1 0 Median 1.0545 0.92839 NaN 1 0 Median 0.78091 0.85227 NaN 1 0 Median 0.95963 0.80292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23960000 11786000 12174000 9336700 3726300 5610400 2891500 1409200 1482400 10822000 6171500 4650100 910020 478930 431090 0 0 0 0 0 0 33032 1793 34730 172688;172689;172690;172691 174231;174232;174233;174234;174235 174233 5 THIDVIHYR IRVNPRVSNVKSVYKTHIDVIHYRKTDAKR VKSVYKTHIDVIHYRKTDAKRLHGLDEEAE K T H Y R K 0 1 0 1 0 0 0 0 2 2 0 0 0 0 0 0 1 0 1 1 0 0 9 0 1152.604 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 364 372 MCM4 DNA replication licensing factor MCM4 yes no 2 0.00081745 96.253 By MS/MS 1 1.3896 1.1643 NaN 1 Median NaN NaN NaN 0 0 Median 1.3896 1.1643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8686800 3764100 4922700 0 0 0 8686800 3764100 4922700 0 0 0 0 0 0 0 0 0 0 0 0 33033 441 34731 172692 174236 174236 1 THIETVINALK MCTLASSEFSHEAVKTHIETVINALKTERD EAVKTHIETVINALKTERDVSVRQRAVDLL K T H L K T 1 0 1 0 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1237.703 O94973;A0A0G2JS82;A0A0G2JQM1 O94973 367 377 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.00012595 119.75 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 0.98996 0.96886 15.153 6 Median 1.1289 1.0931 NaN 1 0 Median 1.088 0.95789 NaN 1 0 Median 0.90072 0.97995 NaN 1 0 Median 1.0697 0.91389 28.85 2 0 Median 0.84718 0.86925 NaN 1 0 Median NaN NaN NaN 0 0 Median 32607000 15424000 17183000 10460000 4386600 6073000 2904000 1419400 1484600 14381000 7234000 7146600 3675700 1759500 1916200 1187200 624730 562440 0 0 0 33034 1741 34732 172693;172694;172695;172696;172697;172698 174237;174238;174239;174240 174239 4 THIETVINALKTER MCTLASSEFSHEAVKTHIETVINALKTERD KTHIETVINALKTERDVSVRQRAVDLLYAM K T H E R D 1 1 1 0 0 0 2 0 1 2 1 1 0 0 0 0 3 0 0 1 0 0 14 1 1623.8944 O94973;A0A0G2JS82;A0A0G2JQM1 O94973 367 380 AP2A2 AP-2 complex subunit alpha-2 yes no 3 0.0025522 47.532 By MS/MS 1 1.2896 1.3379 NaN 1 Median 1.2896 1.3379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2248800 880810 1368000 2248800 880810 1368000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33035 1741 34733 172699 174241 174241 1 THILLFLPK FTEQTAPKIFGGEIKTHILLFLPKSVSDYD FGGEIKTHILLFLPKSVSDYDGKLSNFKTA K T H P K S 0 0 0 0 0 0 0 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 9 0 1080.6696 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 255 263 P4HB Protein disulfide-isomerase yes no 2 0.0028446 69.198 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 1 1 1.2574 1.1367 15.259 8 Median 1.0878 1.0168 5.292 3 0 Median 1.4431 1.2265 6.5356 2 0 Median 1.0133 1.0104 NaN 1 0 Median 1.4279 1.2452 NaN 1 0 Median 1.6111 1.5559 NaN 1 0 Median NaN NaN NaN 0 0 Median 76581000 34350000 42231000 35957000 16821000 19136000 33455000 14134000 19321000 5916700 2911500 3005300 559440 227910 331530 692670 255160 437510 0 0 0 33036 1883 34734 172700;172701;172702;172703;172704;172705;172706;172707 174242;174243;174244;174245;174246;174247;174248 174246 7 THINIVVIGHVDSGK ______________________________ THINIVVIGHVDSGKSTTTGHLIYKCGGID K T H G K S 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 1 0 0 3 0 0 15 0 1587.8733 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 6 20 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2;3 1.1584E-25 181.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 8 26 22 3 5 1.1021 0.997 27.1 53 Median 1.2034 1.162 15.806 8 3 Median 1.0442 0.90605 16.221 8 3 Median 1.1807 1.1661 12.414 10 2 Median 1.0895 0.93571 18.223 19 6 Median 2.0897 2.161 31.495 3 1 Median 1.187 0.97538 13.434 5 3 Median 1666400000 776060000 890290000 234290000 101300000 132980000 77812000 37248000 40564000 334050000 152770000 181280000 952340000 455600000 496740000 23057000 8032900 15024000 44800000 21104000 23697000 33037 2632;404 34735 172708;172709;172710;172711;172712;172713;172714;172715;172716;172717;172718;172719;172720;172721;172722;172723;172724;172725;172726;172727;172728;172729;172730;172731;172732;172733;172734;172735;172736;172737;172738;172739;172740;172741;172742;172743;172744;172745;172746;172747;172748;172749;172750;172751;172752;172753;172754;172755;172756;172757;172758;172759;172760;172761;172762;172763;172764;172765;172766;172767;172768;172769;172770;172771;172772;172773;172774;172775;172776;172777;172778;172779;172780;172781 174249;174250;174251;174252;174253;174254;174255;174256;174257;174258;174259;174260;174261;174262;174263;174264;174265;174266;174267;174268;174269;174270;174271;174272;174273;174274;174275;174276;174277;174278;174279;174280;174281;174282;174283;174284;174285;174286;174287;174288;174289;174290;174291;174292;174293;174294;174295;174296;174297;174298;174299;174300;174301;174302;174303;174304;174305;174306;174307;174308;174309;174310;174311;174312;174313;174314;174315;174316;174317;174318;174319;174320;174321;174322;174323;174324;174325;174326;174327;174328;174329;174330;174331;174332;174333;174334;174335;174336;174337;174338;174339;174340;174341;174342;174343;174344;174345;174346;174347;174348;174349;174350;174351;174352;174353;174354;174355;174356;174357;174358;174359;174360;174361;174362;174363;174364;174365;174366;174367;174368;174369;174370;174371;174372;174373;174374;174375;174376;174377;174378;174379;174380;174381;174382;174383;174384;174385;174386;174387;174388;174389;174390;174391;174392 174381 143 THINYGVK YICRNFTGSSALLTRTHINYGVKGDVAVVR SSALLTRTHINYGVKGDVAVVRINSPNSKV R T H V K G 0 0 1 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 1 1 0 0 8 0 930.49232 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 39 46 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2 0.022726 44.692 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.4738 1.2735 7.0449 5 Median 1.1725 1.1919 NaN 1 0 Median 1.4822 1.2887 1.6774 2 0 Median 1.1602 1.2314 NaN 1 0 Median 1.6194 1.4343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9380400 3912400 5468100 856550 391380 465170 5923200 2321400 3601800 2324800 1077400 1247400 275900 122140 153760 0 0 0 0 0 0 33038 1180 34736 172782;172783;172784;172785;172786 174393;174394;174395 174394 3 THIQDNHDGTYTVAYVPDVTGR LLAVQITDPEGKPKKTHIQDNHDGTYTVAY DGTYTVAYVPDVTGRYTILIKYGGDEIPFS K T H G R Y 1 1 1 3 0 1 0 2 2 1 0 0 0 0 1 0 4 0 2 3 0 0 22 0 2458.1513 P21333;Q60FE5;A0A087WWY3 P21333 1594 1615 FLNA Filamin-A no no 3;4 2.9561E-26 139.46 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 3 0.91028 0.83067 21.662 12 Median 0.9619 0.91871 10.559 4 0 Median 0.8319 0.68766 9.2834 4 0 Median 1.2108 1.3291 NaN 1 1 Median 0.90073 0.78342 15.026 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 156170000 80416000 75750000 74893000 35535000 39358000 72492000 40755000 31736000 6690600 3115100 3575500 2090600 1010800 1079900 0 0 0 0 0 0 33039 2088;3120 34737 172787;172788;172789;172790;172791;172792;172793;172794;172795;172796;172797;172798 174396;174397;174398;174399;174400;174401;174402;174403;174404;174405;174406;174407;174408;174409;174410 174408 15 THLASDDLYK ELEEMGPSLDLVLRRTHLASDDLYKLSMKM LVLRRTHLASDDLYKLSMKMPKALKPKKKK R T H Y K L 1 0 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1161.5666 Q9H7B2;Q5VXN0 Q9H7B2 228 237 RPF2 Ribosome production factor 2 homolog yes no 2 0.00073165 100.02 By MS/MS By MS/MS 2 1 1.3273 1.36 7.4487 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2878 1.3053 5.8049 2 0 Median 1.7832 1.4537 NaN 1 1 Median 30625000 12717000 17907000 0 0 0 0 0 0 0 0 0 0 0 0 26368000 11193000 15176000 4256200 1524600 2731700 33040 3980 34738 172799;172800;172801 174411;174412 174411 2 THLMSEEEWRR RHVMLPRELSKQVPKTHLMSEEEWRRLGVQ QVPKTHLMSEEEWRRLGVQQSLGWVHYMIH K T H R R L 0 2 0 0 0 0 3 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 11 1 1472.683 P33552 P33552 35 45 CKS2 Cyclin-dependent kinases regulatory subunit 2 yes yes 3 0.0061982 32.946 By MS/MS 1 1.2493 1.3567 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2493 1.3567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6428900 2625700 3803200 0 0 0 0 0 0 6428900 2625700 3803200 0 0 0 0 0 0 0 0 0 33041 2223 34739 172802 174413 174413 1 THLMSESEWR RHVMLPKDIAKLVPKTHLMSESEWRNLGVQ KLVPKTHLMSESEWRNLGVQQSQGWVHYMI K T H W R N 0 1 0 0 0 0 2 0 1 0 1 0 1 0 0 2 1 1 0 0 0 0 10 0 1274.5714 P61024;Q5T179;Q9BZU3 P61024 35 44 CKS1B Cyclin-dependent kinases regulatory subunit 1;Cyclin-dependent kinases regulatory subunit yes no 2;3 9.6321E-05 103.87 By MS/MS By MS/MS By MS/MS 3 4 2 1.1809 1.1522 15.922 9 Median 1.1809 1.1522 5.7536 3 0 Median 1.2448 1.0577 13.496 4 2 Linear 1.3144 1.3311 3.9978 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53397000 23359000 30038000 6924600 3342000 3582700 33594000 15014000 18580000 12878000 5003200 7875100 0 0 0 0 0 0 0 0 0 33042 2539 34740;34741 172803;172804;172805;172806;172807;172808;172809;172810;172811 174414;174415;174416;174417;174418;174419;174420;174421;174422;174423 174418 1218 10 THLPGFVEQAEALK VLFGVPGAFTPGCSKTHLPGFVEQAEALKA KTHLPGFVEQAEALKAKGVQVVACLSVNDA K T H L K A 2 0 0 0 0 1 2 1 1 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1538.8093 P30044 P30044 103 116 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2;3 7.956E-07 96.059 By MS/MS By MS/MS By MS/MS 2 4 2 0.86552 0.77847 21.54 8 Median 0.76657 0.72009 0.81495 2 0 Median 1.171 1.0004 22.703 4 0 Median 0.77808 0.74646 11.678 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115120000 63092000 52027000 91316000 49689000 41627000 6369900 2910100 3459800 17433000 10493000 6940100 0 0 0 0 0 0 0 0 0 33043 2181 34742 172812;172813;172814;172815;172816;172817;172818;172819 174424;174425;174426;174427;174428;174429;174430;174431 174430 8 THLPLALLPQTLLDQK GMETLKDTPAPRLLKTHLPLALLPQTLLDQ HLPLALLPQTLLDQKVKVVYVARNAKDVAV K T H Q K V 1 0 0 1 0 2 0 0 1 0 6 1 0 0 2 0 2 0 0 0 0 0 16 0 1800.0509 P50225;H3BRY5;P50226;H3BQX5;E9PKR8 P50225 107 122 SULT1A1;SULT1A2 Sulfotransferase 1A1;Sulfotransferase;Sulfotransferase 1A2 yes no 2;3 0.00067758 43.68 By MS/MS By MS/MS By matching 2 1 1 0.89302 0.7883 37.727 4 Median 0.6549 0.61092 3.692 2 0 Median 1.1834 0.99097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5428 1.3074 NaN 1 0 Median 52662000 27894000 24769000 16560000 9945700 6614200 35926000 17869000 18057000 0 0 0 0 0 0 0 0 0 176570 78666 97905 33044 2410 34743 172820;172821;172822;172823 174432;174433;174434;174435;174436 174435 5 THLQLGSVLYHHTK QAVFPFKPPQRIEARTHLQLGSVLYHHTKN RTHLQLGSVLYHHTKNSEQARSHLEKAWLI R T H T K N 0 0 0 0 0 1 0 1 3 0 3 1 0 0 0 1 2 0 1 1 0 0 14 0 1632.8736 Q9Y6X3;V9GYS3 Q9Y6X3 67 80 MAU2 MAU2 chromatid cohesion factor homolog yes no 3;4 0.0039944 32.275 By MS/MS By matching 2 2 1.1159 1.0192 27.458 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2894 1.3267 34.287 2 1 Median 1.1159 0.95886 5.6394 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8261800 3749800 4512100 0 0 0 0 0 0 5243200 2452500 2790700 3018600 1297200 1721400 0 0 0 0 0 0 33045 4499 34744 172824;172825;172826;172827 174437;174438 174437 2 THLSEVQAFFENQSEATFR IQNIVAGSTYLFSTKTHLSEVQAFFENQSE EVQAFFENQSEATFRLRCVQEALEVIQLNI K T H F R L 2 1 1 0 0 2 3 0 1 0 1 0 0 3 0 2 2 0 0 1 0 0 19 0 2240.0498 Q9UIQ6 Q9UIQ6 978 996 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 3 4.6746E-14 107.75 By MS/MS 2 0.98981 0.97511 16.365 2 Median 0.98981 0.97511 16.365 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5031000 2480200 2550900 5031000 2480200 2550900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33046 4292 34745 172828;172829 174439;174440 174439 2 THLSLSHNPEQK YTKQGFGNLPICMAKTHLSLSHNPEQKGVP MAKTHLSLSHNPEQKGVPTGFILPIRDIRA K T H Q K G 0 0 1 0 0 1 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 12 0 1389.7001 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 867 878 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 1.7306E-06 118.31 By MS/MS By MS/MS By matching 3 2 1 0.90802 0.87614 5.0578 6 Median 0.88613 0.88339 2.2073 3 0 Median 0.9625 0.82422 4.898 2 0 Median NaN NaN NaN 0 0 Median 1.0874 0.91467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26134000 12591000 13543000 5746700 2845000 2901700 19703000 9426700 10276000 0 0 0 684720 319460 365250 0 0 0 0 0 0 33047 1968 34746 172830;172831;172832;172833;172834;172835 174441;174442;174443;174444;174445;174446 174445 6 THLSLSHQPDKK YTQQGFGNLPICMAKTHLSLSHQPDKKGVP MAKTHLSLSHQPDKKGVPRDFILPISDVRA K T H K K G 0 0 0 1 0 1 0 0 2 0 2 2 0 0 1 2 1 0 0 0 0 0 12 1 1389.7365 A0A087WVM4;B7ZM99;Q6UB35;Q4VXM0;Q4VXM1 A0A087WVM4 845 856 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 3 0.03145 19.099 By matching By MS/MS 1 2 1.01 0.99996 10.364 3 Median 0.9379 0.99996 NaN 1 0 Median 1.1035 1.0485 14.138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1452600 699310 753300 180080 86929 93150 1272500 612380 660150 0 0 0 0 0 0 0 0 0 0 0 0 33048 43 34747 172836;172837;172838 174447 174447 1 THLTELQR AGRDPAAAPATGNKKTHLTELQRLLDTAFD PATGNKKTHLTELQRLLDTAFDLDVFKNFS K T H Q R L 0 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 2 0 0 0 0 0 8 0 996.53524 E9PDF2;E9PCR7;Q02218;E9PFG7 E9PDF2 1012 1019 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.011566 75.109 By MS/MS 1 1.7672 1.4837 NaN 1 Median NaN NaN NaN 0 0 Median 1.7672 1.4837 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7129600 2742400 4387100 0 0 0 7129600 2742400 4387100 0 0 0 0 0 0 0 0 0 0 0 0 33049 912 34748 172839 174448 174448 1 THMLTNAILVQQIIK VGQLLRLLLQHAPLRTHMLTNAILVQQIIK THMLTNAILVQQIIKNITTLKSGSVQEQWL R T H I K N 1 0 1 0 0 2 0 0 1 3 2 1 1 0 0 0 2 0 0 1 0 0 15 0 1721.9862 Q9NXF1 Q9NXF1 875 889 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.052285 11.768 By matching By MS/MS 1 1 1.4031 1.3741 44.419 2 Median NaN NaN NaN 0 0 Median 2.0891 1.8811 NaN 1 0 Median 0.94237 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2578600 1374800 1203800 0 0 0 499760 206050 293720 2078800 1168700 910070 0 0 0 0 0 0 0 0 0 33050 4163 34749 172840;172841 174449 174449 1 THMQDLKDVTNNVHYENYR GEHCDFTILRNMLIRTHMQDLKDVTNNVHY DLKDVTNNVHYENYRSRKLAAVTYNGVDNN R T H Y R S 0 1 3 2 0 1 1 0 2 0 1 1 1 0 0 0 2 0 2 2 0 0 19 1 2376.0917 E7ES33;E7EPK1;Q16181;G3V1Q4 E7ES33 272 290 SEPT7 Septin-7 yes no 3;4;5 7.2885E-19 131.31 By matching By MS/MS By MS/MS 1 3 4 1.0781 1.0562 15.264 8 Median 0.77828 0.77643 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97876 0.99319 3.9661 3 0 Median 1.2332 1.1766 4.0778 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 381940000 169720000 212220000 7810500 4330500 3480000 0 0 0 69004000 33965000 35039000 305120000 131420000 173700000 0 0 0 0 0 0 33051 870 34750;34751 172842;172843;172844;172845;172846;172847;172848;172849 174450;174451;174452;174453;174454;174455;174456;174457;174458;174459;174460 174460 317 11 THMTHHPISDHEATLR LENGKETLQRTDPPKTHMTHHPISDHEATL HMTHHPISDHEATLRCWALGFYPAEITLTW K T H L R C 1 1 0 1 0 0 1 0 4 1 1 0 1 0 1 1 3 0 0 0 0 0 16 0 1881.8904 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0 P04439 211 226 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain no no 3;4 0.0052433 25.823 By MS/MS 2 1.1184 0.98095 0.7936 2 Median NaN NaN NaN 0 0 Median 1.1184 0.98095 0.7936 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1295800 625760 670010 0 0 0 1295800 625760 670010 0 0 0 0 0 0 0 0 0 0 0 0 33052 348 34752 172850;172851 174461;174462 174461 2 THMVVANTMEDFQK DIQVTLFTRASEDLKTHMVVANTMEDFQKI KTHMVVANTMEDFQKILDSGKIVQIPFCGE K T H Q K I 1 0 1 1 0 1 1 0 1 0 0 1 2 1 0 0 2 0 0 2 0 0 14 0 1649.7542 P07814 P07814 1422 1435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 8.6828E-08 105.46 By MS/MS By MS/MS By matching By matching By matching 4 5 1 2 1 1.1352 1.0942 28.512 13 Median 1.1754 1.1294 9.0506 4 0 Median 1.1352 1.007 41.811 5 1 Median 1.0046 1.0799 NaN 1 0 Median 0.90284 0.81903 22.211 2 0 Median 1.1165 1.1712 NaN 1 0 Median NaN NaN NaN 0 0 Median 105330000 47337000 57988000 71925000 33504000 38421000 28187000 11499000 16688000 1787100 726840 1060200 2189000 993020 1196000 1236700 614610 622110 0 0 0 33053 1892 34753;34754 172852;172853;172854;172855;172856;172857;172858;172859;172860;172861;172862;172863;172864 174463;174464;174465;174466;174467;174468;174469;174470;174471;174472;174473 174470 661 11 THNDIIHNENMR TLSSELSQARDENKRTHNDIIHNENMRQGR NKRTHNDIIHNENMRQGRDKYKTLRQIRQG R T H M R Q 0 1 3 1 0 0 1 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1492.6841 P15311;E7EQR4 P15311 548 559 EZR Ezrin yes no 2;3 6.1571E-05 95.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 3 4 1 1.1775 1.0193 13.256 13 Median 1.1673 1.1095 NaN 1 0 Median 1.176 1.0148 5.2629 4 0 Median 1.2095 1.2232 10.396 3 3 Median 1.1773 1.0057 14.448 4 1 Median NaN NaN NaN 0 0 Median 1.1882 0.98428 NaN 1 0 Median 90763000 41066000 49697000 6570700 2957300 3613400 20162000 9368100 10793000 51169000 22885000 28284000 12507000 5646900 6860000 0 0 0 354010 208780 145230 33054 879 34755 172865;172866;172867;172868;172869;172870;172871;172872;172873;172874;172875;172876;172877;172878 174474;174475;174476;174477;174478;174479;174480;174481;174482;174483;174484;174485;174486;174487;174488 174487 15 THNEHLAGVLK QRRKKPASQKKRRFKTHNEHLAGVLKDYSD RRFKTHNEHLAGVLKDYSDITSSK______ K T H L K D 1 0 1 0 0 0 1 1 2 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1217.6517 P29084 P29084 272 282 GTF2E2 Transcription initiation factor IIE subunit beta yes yes 3 0.00037366 59.367 By MS/MS 1 1.2467 1.0536 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2467 1.0536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1857400 896530 960900 0 0 0 0 0 0 0 0 0 1857400 896530 960900 0 0 0 0 0 0 33055 2168 34756 172879 174489;174490 174489 2 THNGESVSYLFSHVPL QVIDISMILAEAIRRTHNGESVSYLFSHVP HNGESVSYLFSHVPL_______________ R T H P L - 0 0 1 0 0 0 1 1 2 0 2 0 0 1 1 3 1 0 1 2 0 0 16 0 1785.8686 B1ALA9;P60891;B7ZB02;A0A0B4J207;P21108;H7C540;P11908 B1ALA9 270 285 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 2;3 0.0056145 39.266 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22006000 0 0 22006000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33056 571;1972 34757 172880;172881 174491;174492 174492 2 THNLEPYFESFINNLR QTKWELLQQVDTSTRTHNLEPYFESFINNL HNLEPYFESFINNLRRRVDQLKSDQSRLDS R T H L R R 0 1 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 16 0 1992.9694 P04264;CON__P04264 P04264 224 239 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 2.5623E-33 161.82 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 11 9 6 5 3 0.023907 0.022425 99.073 37 Median 0.033664 0.031874 117.94 10 10 Median 0.024294 0.020892 95.238 8 7 Median 0.020601 0.022332 65.025 8 8 Median 0.060796 0.053022 86.696 6 6 Median 0.015076 0.015027 108.53 5 5 Median NaN NaN NaN 0 0 Median 324200000 319690000 4507500 76121000 73749000 2372600 94807000 93896000 910940 28220000 27671000 549200 3897000 3825800 71197 90873000 90269000 603600 30277000 30277000 0 + 33057 1848 34758 172882;172883;172884;172885;172886;172887;172888;172889;172890;172891;172892;172893;172894;172895;172896;172897;172898;172899;172900;172901;172902;172903;172904;172905;172906;172907;172908;172909;172910;172911;172912;172913;172914;172915;172916;172917;172918;172919;172920;172921;172922;172923;172924;172925;172926 174493;174494;174495;174496;174497;174498;174499;174500;174501;174502;174503;174504;174505;174506;174507;174508;174509;174510;174511;174512;174513;174514;174515;174516;174517;174518;174519;174520;174521;174522;174523;174524;174525;174526;174527;174528;174529;174530;174531;174532;174533;174534;174535;174536;174537;174538;174539;174540;174541;174542;174543;174544;174545;174546;174547;174548;174549;174550;174551;174552;174553;174554;174555;174556;174557;174558;174559;174560;174561;174562 174542 70 THNLEPYFESFINNLRR QTKWELLQQVDTSTRTHNLEPYFESFINNL NLEPYFESFINNLRRRVDQLKSDQSRLDSE R T H R R R 0 2 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 17 1 2149.0705 P04264;CON__P04264 P04264 224 240 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3;4 5.3848E-32 142.91 By MS/MS By MS/MS By MS/MS By MS/MS 10 1 5 1 0.03798 0.042197 179.14 13 Median 0.082276 0.091411 176.86 8 8 Median NaN NaN NaN 0 0 Median 0.0263 0.031986 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.027094 0.03045 71.355 3 3 Median 0.0086991 0.0076909 NaN 1 1 Median 167630000 126930000 40697000 91351000 51276000 40076000 0 0 0 3798200 3710800 87341 0 0 0 53307000 52848000 458950 19171000 19097000 74529 + 33058 1848 34759 172927;172928;172929;172930;172931;172932;172933;172934;172935;172936;172937;172938;172939;172940;172941;172942;172943 174563;174564;174565;174566;174567;174568;174569;174570;174571;174572;174573;174574;174575;174576;174577;174578;174579;174580;174581;174582;174583;174584;174585;174586;174587 174584 25 THNVHVEIEQR MEVDRSPGLPMSDLKTHNVHVEIEQRWHQV SDLKTHNVHVEIEQRWHQVETTPLREEKQV K T H Q R W 0 1 1 0 0 1 2 0 2 1 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1360.6848 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9 A0A494BZV2 747 757 MPRIP Myosin phosphatase Rho-interacting protein yes no 3 5.2503E-05 75.695 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2653 1.137 21.405 6 Median 1.4227 1.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83779 0.92179 27.17 2 0 Median 1.3574 1.1579 0.077502 2 0 Median NaN NaN NaN 0 0 Median 1.1821 0.96242 NaN 1 0 Median 6767900 3197100 3570800 786540 339390 447150 0 0 0 1766000 933070 832890 2787100 1244200 1542900 0 0 0 1428300 680390 747900 33059 453 34760 172944;172945;172946;172947;172948;172949 174588;174589;174590;174591;174592;174593;174594 174592 7 THPQWYPAR EPHATIAEIKNLFTKTHPQWYPARQSLRLD KNLFTKTHPQWYPARQSLRLDPKGKSLKDE K T H A R Q 1 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 1 1 1 0 0 0 9 0 1154.5621 Q9NZ01;M0R2N5;M0R3C3 Q9NZ01 39 47 TECR Very-long-chain enoyl-CoA reductase yes no 2 0.008607 66.682 By MS/MS By MS/MS 1 1 0.81921 0.75096 7.3348 2 Median 0.8116 0.79094 NaN 1 1 Median 0.82688 0.71301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17654000 9025200 8628900 16070000 8127700 7942500 1584000 897500 686460 0 0 0 0 0 0 0 0 0 0 0 0 33060 4181 34761 172950;172951 174595;174596 174595 2 THPSVVPGSIAFSLPQR IVRTSPNHRYTFTLKTHPSVVPGSIAFSLP PSVVPGSIAFSLPQRKWAGLSIGQEIEVSL K T H Q R K 1 1 0 0 0 1 0 1 1 1 1 0 0 1 3 3 1 0 0 2 0 0 17 0 1791.9632 I3L0N3;P46459;I3L0L3 I3L0N3 46 62 NSF Vesicle-fusing ATPase yes no 3 0.0024106 42.813 By MS/MS 1 0.55138 0.52499 NaN 1 Median 0.55138 0.52499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6168700 4287000 1881700 6168700 4287000 1881700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33061 1272 34762 172952 174597 174597 1 THPSVVPGSIAFSLPQRK IVRTSPNHRYTFTLKTHPSVVPGSIAFSLP SVVPGSIAFSLPQRKWAGLSIGQEIEVSLY K T H R K W 1 1 0 0 0 1 0 1 1 1 1 1 0 1 3 3 1 0 0 2 0 0 18 1 1920.0581 I3L0N3;P46459;I3L0L3 I3L0N3 46 63 NSF Vesicle-fusing ATPase yes no 3 0.048462 19.292 By MS/MS 1 0.59677 0.61174 NaN 1 Median 0.59677 0.61174 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676500 2060800 1615700 3676500 2060800 1615700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33062 1272 34763 172953 174598 174598 1 THPVEIFYTPEPER QIYFDNCPLLTIPGRTHPVEIFYTPEPERD RTHPVEIFYTPEPERDYLEAAIRTVIQIHM R T H E R D 0 1 0 0 0 0 3 0 1 1 0 0 0 1 3 0 2 0 1 1 0 0 14 0 1713.8362 O43143 O43143 316 329 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 0.00014528 68.83 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 3 2 3 0.76194 0.68513 23.645 11 Median 0.76194 0.72494 NaN 1 1 Median 0.68809 0.60252 11.057 2 0 Median 0.59984 0.63629 22.485 3 1 Median 1.0157 0.86482 32.939 2 0 Median NaN NaN NaN 0 0 Median 1.0729 0.88211 17.968 3 0 Median 53610000 32208000 21402000 6337400 3670400 2667000 5638000 3207900 2430100 37633000 23329000 14305000 2552600 1367200 1185400 0 0 0 1448700 634170 814530 33063 1553 34764 172954;172955;172956;172957;172958;172959;172960;172961;172962;172963;172964 174599;174600;174601;174602 174599 4 THPVEIFYTPEPERDYLEAAIR QIYFDNCPLLTIPGRTHPVEIFYTPEPERD YTPEPERDYLEAAIRTVIQIHMCEEEEGDL R T H I R T 2 2 0 1 0 0 4 0 1 2 1 0 0 1 3 0 2 0 2 1 0 0 22 1 2645.3126 O43143 O43143 316 337 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 0.029518 13.592 By MS/MS By matching 1 1 0.81948 0.89196 11.495 2 Median 0.80204 0.82233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8373 0.96748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5218100 2426700 2791400 2804700 1517900 1286800 0 0 0 2413400 908790 1504600 0 0 0 0 0 0 0 0 0 33064 1553 34765 172965;172966 174603;174604 174603 2 THQALGILSK DISQAAQILSSDPSRTHQALGILSKTYDAA SDPSRTHQALGILSKTYDAASYICEAAFDE R T H S K T 1 0 0 0 0 1 0 1 1 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1066.6135 P42166 P42166 611 620 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 5.7876E-07 158.47 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 1 4 1.2859 1.112 33.307 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3664 1.3473 39.576 4 0 Median 1.3807 1.1776 42.482 6 0 Median 0.97298 1.0061 NaN 1 1 Median 1.163 0.97362 6.7047 4 0 Median 79132000 35081000 44051000 0 0 0 0 0 0 38249000 16468000 21781000 26072000 11218000 14854000 3552600 2001200 1551400 11258000 5394500 5864000 33065 2306 34766 172967;172968;172969;172970;172971;172972;172973;172974;172975;172976;172977;172978;172979;172980;172981 174605;174606;174607;174608;174609;174610;174611;174612;174613;174614;174615;174616;174617;174618 174609 14 THQMVLLR WMVDVREDAKEDHERTHQMVLLRKLCLPML AKEDHERTHQMVLLRKLCLPMLCFLLHTIL R T H L R K 0 1 0 0 0 1 0 0 1 0 2 0 1 0 0 0 1 0 0 1 0 0 8 0 996.55387 P57740 P57740 843 850 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.020409 68.422 By MS/MS By MS/MS 1 1 1.1489 0.97895 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1489 0.97895 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1503100 707590 795560 0 0 0 0 0 0 0 0 0 1503100 707590 795560 0 0 0 0 0 0 33066 2518 34767 172982;172983 174619;174620 174620 2 THSDQFLVAFK MLVGIGDKIRGILYRTHSDQFLVAFKEVGR ILYRTHSDQFLVAFKEVGRKPPTFGDASVI R T H F K E 1 0 0 1 0 1 0 0 1 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1291.6561 P36542 P36542 144 154 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2;3 5.5912E-05 101.38 By MS/MS By MS/MS By matching 1 2 1 1.2755 1.1284 11.973 4 Median 1.1063 1.0046 NaN 1 0 Median 1.486 1.2502 1.7085 2 0 Median 1.0607 1.0308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41152000 18747000 22405000 23992000 11749000 12243000 15821000 6354100 9467200 1338500 644290 694190 0 0 0 0 0 0 0 0 0 33067 2257 34768 172984;172985;172986;172987 174621;174622;174623;174624;174625 174622 5 THSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLR KAEKDEPGAWEETFKTHSDSKPYGPMSVGL MEHVYGIPEHADNLRLKVTEGGEPYRLYNL K T H L R L 1 1 1 3 0 0 2 4 3 1 3 1 2 1 4 4 1 0 2 2 0 0 36 1 3952.8513 E9PKU7;Q14697;F5H6X6 Q14697 232 267 GANAB Neutral alpha-glucosidase AB no no 5 1.3426E-05 30.909 By MS/MS 2 0.66426 0.64565 7.8339 2 Median NaN NaN NaN 0 0 Median 0.66426 0.64565 7.8339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6617300 3724800 2892600 0 0 0 6617300 3724800 2892600 0 0 0 0 0 0 0 0 0 0 0 0 33068 2896;951 34769 172988;172989 174626 174626 1 THSGLTDGIPLQSISAPGSGIWSDGK VTAAQVARVLGMMARTHSGLTDGIPLQSIS QSISAPGSGIWSDGKDKSDGAQAHTWNVEV R T H G K D 1 0 0 2 0 1 0 5 1 3 2 1 0 0 2 5 2 1 0 0 0 0 26 0 2580.282 A5YKK6 A5YKK6 300 325 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 3 0.0038581 23.675 By MS/MS 1 0.80818 0.7784 NaN 1 Median 0.80818 0.7784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3697100 1893200 1803900 3697100 1893200 1803900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33069 503 34770 172990 174627 174627 1 THSIIPR IAVKVNPEREDSETRTHSIIPRGSLSLKVL EREDSETRTHSIIPRGSLSLKVLAELPIIV R T H P R G 0 1 0 0 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 0 0 0 7 0 822.47119 F2Z2U4;Q9Y4A5 F2Z2U4 211 217 TRRAP Transformation/transcription domain-associated protein yes no 2 0.07339 34.892 By MS/MS By matching 2 1 1.0339 1.0992 3.8774 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0064 1.0659 4.3484 2 0 Median NaN NaN NaN 0 0 Median 1.0927 1.1104 NaN 1 0 Median NaN NaN NaN 0 0 Median 1261700 607380 654330 0 0 0 0 0 0 1199400 575290 624110 0 0 0 62316 32097 30219 0 0 0 33070 991 34771 172991;172992;172993 174628 174628 1 THSLVCPETVSR ______________________________ ______________________________ M T H S R V 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 2 2 0 0 2 0 0 12 0 1384.6769 Q86WQ0;U3KQ53;F5H0B6 Q86WQ0 2 13 NR2C2AP Nuclear receptor 2C2-associated protein yes no 2;3 3.2567E-06 134.59 By matching By MS/MS By MS/MS 1 1 1 0.94728 0.80656 44.365 3 Median 0.49696 0.48199 NaN 1 0 Median 0.94728 0.80656 NaN 1 0 Median 1.1801 1.1658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28713000 14216000 14497000 749780 472760 277020 17709000 8735400 8973600 10254000 5007900 5246300 0 0 0 0 0 0 0 0 0 33071 3294 34772;34773 172994;172995;172996 174629;174630;174631;174632;174633 174633 5 THSTSSSLGSGESPFSR GYIPSASMTRLARSRTHSTSSSLGSGESPF STSSSLGSGESPFSRSVTSNQSDGTQESCE R T H S R S 0 1 0 0 0 0 1 2 1 0 1 0 0 1 1 7 2 0 0 0 0 0 17 0 1722.7809 Q9UGV2;F8WBF9;Q5TH30 Q9UGV2 329 345 NDRG3 Protein NDRG3 yes no 3 5.8218E-06 74.786 By MS/MS By MS/MS By matching 1 1 1 0.98469 1.0704 7.044 3 Median 0.96927 0.96075 NaN 1 0 Median 1.2623 1.0966 NaN 1 0 Median 0.98469 1.0704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12938000 6984500 5953700 6026700 3439400 2587300 4853200 2350200 2502900 2058300 1194900 863470 0 0 0 0 0 0 0 0 0 33072 4267 34774 172997;172998;172999 174634;174635;174636;174637 174637 4 THSTTSQAISVGMR EATLEDGLEEEAVEKTHSTTSQAISVGMRM KTHSTTSQAISVGMRMNAEFIMLNHFSQRY K T H M R M 1 1 0 0 0 1 0 1 1 1 0 0 1 0 0 3 3 0 0 1 0 0 14 0 1474.7198 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 701 714 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2;3 7.2056E-05 75.102 By MS/MS By MS/MS By matching 1 2 1 1.0682 0.92091 24.107 4 Median 1.3793 1.3516 NaN 1 0 Median 1.0482 0.90927 17.358 2 1 Median NaN NaN NaN 0 0 Median 0.96171 0.82497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9888800 4529200 5359600 2627200 950640 1676500 6430200 3177000 3253300 0 0 0 831340 401600 429740 0 0 0 0 0 0 33073 3782 34775 173000;173001;173002;173003 174638;174639;174640 174639 3 THSVNGITEEADPTIYSGK SKGKGNKVSAEKVNKTHSVNGITEEADPTI NGITEEADPTIYSGKVIRPLRSVDPTQTEY K T H G K V 1 0 1 1 0 0 2 2 1 2 0 1 0 0 1 2 3 0 1 1 0 0 19 0 2017.9593 O75534;E9PLT0 O75534 582 600 CSDE1 Cold shock domain-containing protein E1 yes no 3 3.0821E-08 72.772 By MS/MS By MS/MS By matching 1 1 1 0.86905 0.76489 28.154 3 Median 1.1596 1.0639 NaN 1 0 Median 0.86905 0.76489 NaN 1 0 Median 0.56257 0.60761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14562000 7530500 7031100 7608300 3313600 4294700 2950100 1640200 1309800 4003300 2576700 1426600 0 0 0 0 0 0 0 0 0 33074 1684 34776 173004;173005;173006 174641;174642;174643 174641 3 THSVPATPTSTPVPNPEAESSSK NEPPGRELTKEDLFKTHSVPATPTSTPVPN TSTPVPNPEAESSSKEGELDARDLEMSKKV K T H S K E 2 0 1 0 0 0 2 0 1 0 0 1 0 0 5 5 4 0 0 2 0 0 23 0 2320.1183 Q96FF9;B5MBX0 Q96FF9 105 127 CDCA5 Sororin yes no 3 5.4681E-05 34.009 By MS/MS 1 0.3345 0.32062 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3345 0.32062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5139100 3583700 1555400 0 0 0 0 0 0 5139100 3583700 1555400 0 0 0 0 0 0 0 0 0 33075 616 34777 173007 174644 174644 1 THTDTESEASILGDSGEYK LRVCFGMLPKSKTSKTHTDTESEASILGDS TESEASILGDSGEYKMILVVRNDLKMGKGK K T H Y K M 1 0 0 2 0 0 3 2 1 1 1 1 0 0 0 3 3 0 1 0 0 0 19 0 2038.8967 J3KQ48;Q9Y3E5 J3KQ48 49 67 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 3 1.7829E-18 127.22 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.357 1.2313 17.278 4 Median 0.98357 0.92938 NaN 1 0 Median 1.3177 1.1389 NaN 1 0 Median 1.3975 1.3438 NaN 1 0 Median 1.6135 1.3312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13913000 5829600 8083300 9062300 3833300 5229000 1952700 959120 993560 2134100 697190 1436900 763790 340010 423780 0 0 0 0 0 0 33076 1317 34778 173008;173009;173010;173011 174645;174646 174645 2 THTGKYWTLTATGGVQSTASSK FQLEIDRDTKKCAFRTHTGKYWTLTATGGV TLTATGGVQSTASSKNASCYFDIEWRDRRI R T H S K N 2 0 0 0 0 1 0 3 1 0 1 2 0 0 0 3 6 1 1 1 0 0 22 1 2281.1339 Q16658;C9JFC0;A0A0A0MSB2;C9JPH9 Q16658 309 330 FSCN1 Fascin yes no 3 1.0235E-06 39.188 By MS/MS 1 1.2097 1.1616 NaN 1 Median 1.2097 1.1616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4936600 2245300 2691300 4936600 2245300 2691300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33077 2993 34779 173012 174647 174647 1 THVADFAPEVAWVTR YFPMFVSQSALEKEKTHVADFAPEVAWVTR THVADFAPEVAWVTRSGKTELAEPIAIRPT K T H T R S 3 1 0 1 0 0 1 0 1 0 0 0 0 1 1 0 2 1 0 3 0 0 15 0 1697.8526 P07814 P07814 1092 1106 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 6.3532E-08 142.97 By MS/MS By MS/MS 2 1 0.96773 0.90812 3.647 3 Plateau 0.96369 0.9044 0.5809 2 0 Median 0.9933 0.84938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42199000 20827000 21372000 37293000 18528000 18765000 4906200 2299000 2607200 0 0 0 0 0 0 0 0 0 0 0 0 33078 1892 34780 173013;173014;173015 174648;174649;174650;174651;174652;174653 174651 6 THVDILNDFTLDVMK LQLADALGPSICMLKTHVDILNDFTLDVMK THVDILNDFTLDVMKELITLAKCHEFLIFE K T H M K E 0 0 1 3 0 0 0 0 1 1 2 1 1 1 0 0 2 0 0 2 0 0 15 0 1759.8815 P11172;E9PFD2 P11172 282 296 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.00046157 61.435 By MS/MS 1 1.5719 1.347 NaN 1 Median NaN NaN NaN 0 0 Median 1.5719 1.347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2473600 995880 1477800 0 0 0 2473600 995880 1477800 0 0 0 0 0 0 0 0 0 0 0 0 33079 1953 34781 173016 174654 174654 1 THVDSHGHNVFK GPRLEIHHRFKNFLRTHVDSHGHNVFKERI FLRTHVDSHGHNVFKERISDMCKENRESLV R T H F K E 0 0 1 1 0 0 0 1 3 0 0 1 0 1 0 1 1 0 0 2 0 0 12 0 1376.6585 P49736;H0Y8E6 P49736 205 216 MCM2 DNA replication licensing factor MCM2 yes no 2;3 0.00024723 59.367 By MS/MS By matching 2 1 1.2336 1.0551 17.208 3 Median NaN NaN NaN 0 0 Median 1.2124 1.0328 3.0235 2 0 Median 1.2849 1.3882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8774600 3905500 4869200 0 0 0 8497000 3760000 4737100 277590 145510 132080 0 0 0 0 0 0 0 0 0 33080 2393 34782 173017;173018;173019 174655;174656;174657;174658 174656 4 THVEEGDIVYR GEQAKALFEKVKKFRTHVEEGDIVYRLYMR KKFRTHVEEGDIVYRLYMRQTIIKVIKFIL R T H Y R L 0 1 0 1 0 0 2 1 1 1 0 0 0 0 0 0 1 0 1 2 0 0 11 0 1316.6361 Q8IWT6 Q8IWT6 252 262 LRRC8A Volume-regulated anion channel subunit LRRC8A yes yes 2 0.036407 46.891 By MS/MS 1 2.1515 1.9455 NaN 1 Median NaN NaN NaN 0 0 Median 2.1515 1.9455 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 949350 143930 805420 0 0 0 949350 143930 805420 0 0 0 0 0 0 0 0 0 0 0 0 33081 3328 34783 173020 174659 174659 1 THVTHHPLSDHEATLR LENGKETLQRAEPPKTHVTHHPLSDHEATL HVTHHPLSDHEATLRCWALGFYPAEITLTW K T H L R C 1 1 0 1 0 0 1 0 4 0 2 0 0 0 1 1 3 0 0 1 0 0 16 0 1849.9183 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A1W2PRU9 P10321 211 226 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes no 3;4 3.508E-05 53.403 By MS/MS By MS/MS 1 3 1.0504 0.93316 12.41 4 Median 0.85332 0.87255 NaN 1 0 Median 1.1518 0.99799 14.002 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4829600 2361400 2468300 1121600 598030 523550 3708000 1763300 1944700 0 0 0 0 0 0 0 0 0 0 0 0 33082 314 34784 173021;173022;173023;173024 174660;174661;174662;174663;174664;174665;174666;174667 174662 8 THYIVGYNLPSYEYLYNLGDQYALK EMEIRPRFPLFGGWKTHYIVGYNLPSYEYL SYEYLYNLGDQYALKMRFVDHVFDEQVIDS K T H L K M 1 0 2 1 0 1 1 2 1 1 4 1 0 0 1 1 1 0 6 1 0 0 25 0 2996.4596 P04843;B7Z4L4 P04843 328 352 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 0.0018666 25.407 By MS/MS By MS/MS By matching 1 1 1 0.87701 0.91174 5.6032 3 Median 0.87701 0.84285 NaN 1 0 Median 1.0892 0.93944 NaN 1 0 Median 0.81619 0.91174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8086100 4030200 4055900 3597100 1936200 1660900 2537700 1083900 1453900 1951200 1010000 941160 0 0 0 0 0 0 0 0 0 33083 1853 34785 173025;173026;173027 174668;174669;174670;174671 174668 4 THYPAQQGEYQTHQPVYHK VTRPAAQPSFHQAQKTHYPAQQGEYQTHQP AQQGEYQTHQPVYHKIQGDDWEPRPLRAAS K T H H K I 1 0 0 0 0 4 1 1 3 0 0 1 0 0 2 0 2 0 3 1 0 0 19 0 2311.077 O95817;C9JFK9 O95817 231 249 BAG3 BAG family molecular chaperone regulator 3 yes no 4 0.029024 13.627 By MS/MS By matching By matching By matching 1 1 1 1 0.87033 0.84458 35.494 4 Median 1.2045 1.2036 NaN 1 0 Median 0.77474 0.68576 NaN 1 0 Median 0.9777 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52753 0.56167 NaN 1 0 Median NaN NaN NaN 0 0 Median 6963400 3579100 3384300 1499200 651780 847380 1961300 1145600 815730 1719600 707420 1012200 0 0 0 1783300 1074300 708970 0 0 0 33084 1796 34786 173028;173029;173030;173031 174672;174673 174673 2 THYQADIER GLVTDAFKLKRKELKTHYQADIERMYGRK_ KRKELKTHYQADIERMYGRK__________ K T H E R M 1 1 0 1 0 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1131.5309 O95573 O95573 707 715 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.0044715 60.59 By matching By MS/MS 1 2 1.7123 1.481 19.267 3 Plateau 1.0564 1.0561 NaN 1 0 Median 1.6716 1.4743 0.64339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625000 1112300 1512700 490660 256250 234420 2134300 856030 1278300 0 0 0 0 0 0 0 0 0 0 0 0 33085 1780 34787 173032;173033;173034 174674;174675;174676 174675 3 THYSNIEANESEEVR SEAAAQYNPEPPPPRTHYSNIEANESEEVR THYSNIEANESEEVRQFRRLFAQLAGDDME R T H V R Q 1 1 2 0 0 0 4 0 1 1 0 0 0 0 0 2 1 0 1 1 0 0 15 0 1776.7915 A0A0C4DGQ5;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7ELJ7;K7EM73 A0A0C4DGQ5 85 99 CAPNS1 Calpain small subunit 1 yes no 2;3 4.4759E-10 153.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1 1.1043 0.95271 13.79 10 Median 0.93481 0.8862 7.3289 2 0 Median 1.2502 1.0578 5.9727 3 0 Plateau 0.97985 0.93542 15.277 2 0 Median 1.1029 0.91342 6.7313 2 0 Median NaN NaN NaN 0 0 Median 1.6372 1.3289 NaN 1 0 Median 117650000 54232000 63421000 57197000 27628000 29569000 43347000 18630000 24717000 9905700 5020300 4885400 5366800 2206900 3159900 0 0 0 1836300 746540 1089800 33086 251 34788 173035;173036;173037;173038;173039;173040;173041;173042;173043;173044 174677;174678;174679;174680;174681;174682;174683;174684;174685;174686;174687;174688;174689;174690;174691;174692;174693;174694 174692 18 TIAALLPCLLDK CVKMCDPAKGAAGQRTIAALLPCLLDKGMM GQRTIAALLPCLLDKGMMSTVTEVRALSIN R T I D K G 2 0 0 1 1 0 0 0 0 1 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1326.7581 Q5VYK3;J3KN16 Q5VYK3 1250 1261 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.00057239 74.841 By MS/MS 1 0.99396 0.88115 NaN 1 Median NaN NaN NaN 0 0 Median 0.99396 0.88115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6349800 3363700 2986000 0 0 0 6349800 3363700 2986000 0 0 0 0 0 0 0 0 0 0 0 0 33087 3116 34789 173045 174695 174695 1 TIAATPIQTLPQSQSTPK QPSITLTSQPATPTRTIAATPIQTLPQSQS ATPIQTLPQSQSTPKRIDTPSLEEPSDLEE R T I P K R 2 0 0 0 0 3 0 0 0 2 1 1 0 0 3 2 4 0 0 0 0 0 18 0 1881.0207 P14859;A0A0C4DG88 P14859 255 272 POU2F1 POU domain, class 2, transcription factor 1;POU domain protein yes no 2;3 3.7532E-15 162.32 By MS/MS By MS/MS 4 4 0.61471 0.6261 22.282 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54788 0.5897 25.455 4 0 Median 0.77273 0.66436 14.968 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59071000 36033000 23038000 0 0 0 0 0 0 51210000 31662000 19548000 7860700 4371300 3489400 0 0 0 0 0 0 33088 2010 34790 173046;173047;173048;173049;173050;173051;173052;173053 174696;174697;174698;174699;174700;174701;174702;174703;174704;174705 174697 10 TIAECLADELINAAK LLCTGAREAAFRNIKTIAECLADELINAAK TIAECLADELINAAKGSSNSYAIKKKDELE K T I A K G 4 0 1 1 1 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1630.8236 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 168 182 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.00032492 51.927 By MS/MS By MS/MS 1 2 1.186 1.0069 2.0201 3 Median 1.0744 1.0069 NaN 1 0 Median 1.1876 1.0189 2.6883 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8876100 4118600 4757500 3452300 1664200 1788100 5423800 2454500 2969300 0 0 0 0 0 0 0 0 0 0 0 0 33089 1425 34791 173054;173055;173056 174706;174707 174707 2 TIAEGENLLLK DFSKTLTAQSHMYEKTIAEGENLLLKTQGS MYEKTIAEGENLLLKTQGSEKAALQLQLNT K T I L K T 1 0 1 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 11 0 1199.6762 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2820 2830 DST Dystonin yes no 2 0.0022708 54.416 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1334 1.0958 20.775 4 Median 1.5114 1.5123 NaN 1 1 Median 1.1955 1.0427 NaN 1 0 Median 1.0745 1.1516 NaN 1 0 Median 1.0125 0.92975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21635000 8416400 13219000 8921800 3429000 5492800 4701200 1710100 2991100 7693300 3126000 4567300 319050 151340 167710 0 0 0 0 0 0 33090 934 34792 173057;173058;173059;173060 174708;174709;174710;174711;174712 174709 5 TIAEQLAEK ILRGGTILAPTVSAKTIAEQLAEKINAKLN PTVSAKTIAEQLAEKINAKLNYVPLEKQEE K T I E K I 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 1001.5393 Q7L014;A0A0C4DG89 Q7L014 895 903 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.001584 79.906 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0775 1.0582 11.564 5 Median 1.033 1.0037 NaN 1 0 Median 1.0775 0.91247 NaN 1 0 Median 1.0118 1.0793 NaN 1 0 Median 1.4766 1.2523 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2806 1.0582 NaN 1 0 Median 37635000 17590000 20046000 7068700 3369800 3699000 9802500 4114600 5687900 17211000 8534500 8676500 1987400 889880 1097600 0 0 0 1565500 680810 884740 33091 3216 34793 173061;173062;173063;173064;173065 174713;174714;174715;174716;174717;174718;174719;174720;174721 174715 9 TIAETEAAYLK ENLARKIASRNEFDRTIAETEAAYLKILES EFDRTIAETEAAYLKILESSQTLLSVLKRE R T I L K I 3 0 0 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 1 0 0 0 11 0 1208.6289 O43805 O43805 74 84 SSNA1 Sjoegren syndrome nuclear autoantigen 1 yes yes 2 0.0012178 82.287 By MS/MS By MS/MS 2 1 2.314 1.9939 97.089 3 Plateau 0.93703 0.85083 3.1149 2 2 Median 5.5822 4.5706 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143450000 22030000 121430000 32598000 13915000 18683000 110860000 8114200 102740000 0 0 0 0 0 0 0 0 0 0 0 0 33092 1591 34794 173066;173067;173068 174722;174723;174724;174725 174723 4 TIAFAHDSTR KLMSDLQKLIQGKIKTIAFAHDSTRVIQCY QGKIKTIAFAHDSTRVIQCYIQYGNEEQRK K T I T R V 2 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 10 0 1117.5516 Q15397 Q15397 172 181 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS 2 1 1.1311 1.1385 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1311 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median 2167100 1038800 1128200 0 0 0 0 0 0 0 0 0 0 0 0 2167100 1038800 1128200 0 0 0 33093 2947 34795 173069;173070;173071 174726;174727;174728 174727 3 TIAFLLPMFR SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ TGSGKTIAFLLPMFRHIMDQRSLEEGEGPI K T I F R H 1 1 0 0 0 0 0 0 0 1 2 0 1 2 1 0 1 0 0 0 0 0 10 0 1207.6787 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 423 432 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0004067 76.899 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 3 6 2 1 1 1.0681 1.074 11.802 15 Median 1.0664 1.047 13.616 2 0 Median 1.0842 0.95001 1.0582 3 0 Median 1.0451 1.1292 4.2877 6 0 Median 1.1784 1.0183 13.999 2 0 Median 1.2442 1.3244 NaN 1 0 Median 1.0548 0.86724 NaN 1 0 Median 51916000 25334000 26582000 9078800 4410700 4668100 2481200 1162000 1319200 37069000 18306000 18763000 964180 437690 526490 1824100 779940 1044100 498200 237150 261060 33094 3216 34796 173072;173073;173074;173075;173076;173077;173078;173079;173080;173081;173082;173083;173084;173085;173086 174729;174730;174731;174732;174733;174734;174735;174736 174733 8 TIAGIIYENYLLSR AGFLIGDGAGVGKGRTIAGIIYENYLLSRK RTIAGIIYENYLLSRKRALWFSVSNDLKYD R T I S R K 1 1 1 0 0 0 1 1 0 3 2 0 0 0 0 1 1 0 2 0 0 0 14 0 1624.8825 A3KN83 A3KN83 330 343 SBNO1 Protein strawberry notch homolog 1 yes yes 2 0.043911 24.855 By MS/MS By matching 1 1 0.97275 1.0018 17.842 2 Median 1.1383 1.1365 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83128 0.88309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1199000 607290 591710 978060 518270 459790 0 0 0 220940 89023 131920 0 0 0 0 0 0 0 0 0 33095 501 34797 173087;173088 174737 174737 1 TIAIIAEGIPEALTR AYDSTMETMNYAQIRTIAIIAEGIPEALTR TIAIIAEGIPEALTRKLIKKADQKGVTIIG R T I T R K 3 1 0 0 0 0 2 1 0 4 1 0 0 0 1 0 2 0 0 0 0 0 15 0 1566.8981 P53396 P53396 593 607 ACLY ATP-citrate synthase yes yes 2 2.6235E-19 135.6 By MS/MS By MS/MS By MS/MS 2 3 2 0.97928 0.94337 22.255 7 Median 0.77659 0.76013 30.542 2 1 Median 1.0741 0.89162 13.559 3 2 Median 1.038 1.1144 11.38 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53587000 25823000 27764000 13336000 6869300 6467100 38733000 18179000 20554000 1517800 775390 742430 0 0 0 0 0 0 0 0 0 33096 2467 34798 173089;173090;173091;173092;173093;173094;173095 174738;174739;174740;174741;174742;174743;174744;174745;174746 174746 9 TIALNGVEDVR NSDDRVLLDLSAFLKTIALNGVEDVRTVLE AFLKTIALNGVEDVRTVLEHYALEDDPLAA K T I V R T 1 1 1 1 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1185.6354 Q3ZCQ8;M0R0C3;M0R2F8 Q3ZCQ8 285 295 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes no 2 0.00020098 103.7 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.5814 1.3151 39.067 4 Median 1.0769 1.0762 NaN 1 0 Median 1.4113 1.1786 NaN 1 0 Median 2.6891 2.5697 NaN 1 0 Median 1.7721 1.4674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30175000 12582000 17593000 20097000 9147700 10949000 3875600 1747900 2127700 3942800 845160 3097600 2259700 841130 1418600 0 0 0 0 0 0 33097 3016 34799 173096;173097;173098;173099 174747;174748 174747 2 TIAMDGTEGLVR LVLEVAQHLGESTVRTIAMDGTEGLVRGQK TVRTIAMDGTEGLVRGQKVLDSGAPIKIPV R T I V R G 1 1 0 1 0 0 1 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 12 0 1261.6336 P06576;H0YH81;F8W079 P06576 110 121 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 3.6524E-06 129.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 2 1 1.1544 1.1197 29.628 10 Median 1.1026 1.0639 5.1505 4 0 Median 1.3512 1.1289 NaN 1 0 Median 0.75986 0.783 49.436 2 1 Median 1.7899 1.5455 15.581 2 2 Median 1.36 1.3646 NaN 1 1 Median NaN NaN NaN 0 0 Median 384430000 169700000 214730000 254790000 117240000 137550000 109930000 44667000 65260000 4945700 2364800 2580900 7137400 2444200 4693200 7634600 2986300 4648300 0 0 0 33098 1872 34800;34801 173100;173101;173102;173103;173104;173105;173106;173107;173108;173109 174749;174750;174751;174752;174753;174754;174755;174756;174757;174758;174759;174760;174761;174762;174763 174756 631 15 TIAPALVSK YMGKGVSKAVEHINKTIAPALVSKKLNVTE VEHINKTIAPALVSKKLNVTEQEKIDKLMI K T I S K K 2 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 9 0 898.54877 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 72 80 ENO1 Alpha-enolase;Enolase yes no 2 0.0027555 69.812 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 8 5 4 1 1 1.0423 0.92288 20.558 25 Median 0.99729 0.92071 7.7777 7 0 Median 1.0597 0.88912 7.1042 7 0 Median 1.1751 1.1573 19.805 5 0 Median 0.80844 0.66182 23.039 4 0 Median 1.2529 1.1933 NaN 1 0 Median 1.048 0.88033 NaN 1 0 Median 1090200000 521750000 568430000 307630000 148200000 159420000 489970000 235100000 254870000 103110000 49013000 54099000 182240000 86334000 95910000 6293600 2621400 3672200 939220 477900 461320 33099 1873 34802 173110;173111;173112;173113;173114;173115;173116;173117;173118;173119;173120;173121;173122;173123;173124;173125;173126;173127;173128;173129;173130;173131;173132;173133;173134;173135 174764;174765;174766;174767;174768;174769;174770;174771;174772;174773;174774;174775;174776;174777;174778;174779;174780;174781;174782;174783;174784;174785;174786;174787;174788;174789;174790;174791;174792;174793 174788 30 TIAPALVSKK YMGKGVSKAVEHINKTIAPALVSKKLNVTE EHINKTIAPALVSKKLNVTEQEKIDKLMIE K T I K K L 2 0 0 0 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 1 0 0 10 1 1026.6437 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 72 81 ENO1 Alpha-enolase;Enolase yes no 2 0.0053653 55.549 By MS/MS By MS/MS By matching 2 1 1 1.0496 0.99718 9.6257 4 Median 1.0814 1.026 13.13 2 0 Median 1.1291 1.0635 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97569 0.92673 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6610600 3321600 3289000 4547400 2309800 2237500 1467600 679540 788070 0 0 0 595610 332250 263360 0 0 0 0 0 0 33100 1873 34803 173136;173137;173138;173139 174794;174795;174796 174795 3 TIAPIIGR EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE LMPTQWRTIAPIIGRTAAQCLEHYEFLLDK R T I G R T 1 1 0 0 0 0 0 1 0 3 0 0 0 0 1 0 1 0 0 0 0 0 8 0 839.52289 Q99459 Q99459 84 91 CDC5L Cell division cycle 5-like protein yes yes 2 0.0060114 73.039 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 2 2 1.0636 0.96776 18.856 13 Median 1.0471 1.0362 NaN 1 0 Median 1.5038 1.2671 15.659 3 0 Median 0.86167 0.89369 1.6263 2 0 Median 1.0746 0.92333 3.3926 3 0 Median 1.0758 1.1373 1.5465 2 0 Median 0.95286 0.79751 8.7758 2 0 Median 33402000 17020000 16382000 1986400 1006400 979960 2777800 1001100 1776800 16289000 8769700 7518900 3119900 1548800 1571100 5467500 2809800 2657800 3761300 1884100 1877200 33101 3745 34804 173140;173141;173142;173143;173144;173145;173146;173147;173148;173149;173150;173151;173152 174797;174798;174799;174800;174801;174802;174803;174804 174797 8 TIAPQNAPR NSPIHHIPSRRSPAKTIAPQNAPRDESRGR RRSPAKTIAPQNAPRDESRGRSSFYPDGGD K T I P R D 2 1 1 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 9 0 966.52468 Q9NYF8;A0A1W2PQ43;E9PK09;E9PQN2;E9PKI6;E9PK91;E9PJA7;H0YF00 Q9NYF8 304 312 BCLAF1 Bcl-2-associated transcription factor 1 yes no 2 0.001612 89.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 0.5894 0.60654 14.985 6 Median 0.60627 0.61277 NaN 1 0 Median 0.54405 0.46389 NaN 1 1 Median 0.55663 0.60037 NaN 1 0 Median 0.573 0.49545 NaN 1 1 Median 0.6334 0.66463 NaN 1 0 Median 0.80541 0.65547 NaN 1 0 Median 8905500 5304900 3600600 743790 449110 294690 3256100 2016500 1239600 1033800 621360 412400 422080 221440 200640 2384700 1422100 962660 1065000 574420 490610 33102 4175 34805 173153;173154;173155;173156;173157;173158 174805;174806;174807;174808;174809;174810;174811 174808 7 TIAPTGHLHTVEFHQQR ESGTGSGSVSHAIIRTIAPTGHLHTVEFHQ APTGHLHTVEFHQQRAEKAREEFQEHRVGR R T I Q R A 1 1 0 0 0 2 1 1 3 1 1 0 0 1 1 0 3 0 0 1 0 0 17 0 1971.0075 Q96FX7;H0Y2Q1 Q96FX7 124 140 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes no 3;4 6.961E-06 57.52 By MS/MS By MS/MS By matching 2 1 1 0.98365 0.86922 14.761 4 Median 1.0102 0.94586 8.3336 2 0 Median 0.84297 0.70367 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0158 0.84727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35050000 17110000 17940000 28962000 14165000 14796000 4118200 2050500 2067600 0 0 0 1970100 893910 1076200 0 0 0 0 0 0 33103 3650 34806 173159;173160;173161;173162 174812;174813;174814;174815 174815 4 TIAQAVYGAK QFLYDVQVPIVDKIRTIAQAVYGAKDIELS VDKIRTIAQAVYGAKDIELSPEAQAKIDRY R T I A K D 3 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 1 1 0 0 10 0 1020.5604 A0A087WVM4;B7ZM99;Q6UB35 A0A087WVM4 806 815 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.00047247 74.127 By MS/MS By MS/MS 1 1 1.1751 1.0698 20.226 2 Median 0.94686 0.92721 NaN 1 1 Median 1.4583 1.2342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15280000 6663100 8616600 4373900 2024000 2349900 10906000 4639000 6266700 0 0 0 0 0 0 0 0 0 0 0 0 33104 43 34807 173163;173164 174816;174817;174818 174817 3 TIAQDYGVLK GLGPMNIPLVSDPKRTIAQDYGVLKADEGI SDPKRTIAQDYGVLKADEGISFRGLFIIDD R T I L K A 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 Q06830;A0A0A0MSI0 Q06830 111 120 PRDX1 Peroxiredoxin-1 yes no 2 0.00037911 101.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 4 2 4 2 1 1.2722 1.0563 54.461 19 Median 1.3072 1.2043 64.837 6 1 Median 1.2196 0.99959 6.0549 4 0 Median 1.2923 1.234 22.681 2 0 Median 1.1982 0.98412 87.541 4 0 Median 1.3613 1.3996 10.555 2 0 Median 1.2814 1.0563 NaN 1 0 Median 2557800000 1079900000 1477900000 1706200000 711450000 994770000 477930000 216540000 261380000 288340000 113950000 174390000 58830000 25976000 32855000 10627000 5044900 5582100 15859000 6973800 8884800 33105 2728 34808 173165;173166;173167;173168;173169;173170;173171;173172;173173;173174;173175;173176;173177;173178;173179;173180;173181;173182;173183;173184 174819;174820;174821;174822;174823;174824;174825;174826;174827;174828;174829;174830;174831;174832;174833;174834;174835;174836;174837;174838;174839;174840;174841 174821 23 TIAQDYGVLKADEGISFR GLGPMNIPLVSDPKRTIAQDYGVLKADEGI QDYGVLKADEGISFRGLFIIDDKGILRQIT R T I F R G 2 1 0 2 0 1 1 2 0 2 1 1 0 1 0 1 1 0 1 1 0 0 18 1 1982.0109 Q06830;A0A0A0MSI0 Q06830 111 128 PRDX1 Peroxiredoxin-1 yes no 2;3 1.6191E-12 104.17 By MS/MS By MS/MS 4 1 1.2238 1.2532 26.822 5 Median 1.5757 1.6428 30.947 4 2 Linear 1.2723 1.1695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249590000 103850000 145740000 227390000 94037000 133360000 22193000 9813000 12380000 0 0 0 0 0 0 0 0 0 0 0 0 33106 2728 34809 173185;173186;173187;173188;173189 174842;174843;174844;174845;174846;174847 174846 6 TIAQGNLSNTDVQAAK TAAGDVIKAAYNQVKTIAQGNLSNTDVQAA IAQGNLSNTDVQAAKNKLKAGYLMSVESSE K T I A K N 3 0 2 1 0 2 0 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 16 0 1629.8322 P22695;H3BRG4 P22695 360 375 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2 1.72E-10 161.99 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.1607 1.0704 16.233 8 Median 1.1607 1.0721 2.412 2 0 Median 1.6156 1.3767 13.357 3 0 Plateau 0.89847 0.9163 6.1933 2 0 Median 1.0716 0.96463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96014000 43661000 52353000 43529000 19600000 23929000 22465000 8696000 13769000 13145000 6389600 6755300 16875000 8975900 7898800 0 0 0 0 0 0 33107 2105 34810 173190;173191;173192;173193;173194;173195;173196;173197 174848;174849;174850;174851;174852;174853;174854;174855;174856;174857;174858;174859;174860 174849 13 TIATALEYVYK GDVENWARSIELDMRTIATALEYVYKGQLQ LDMRTIATALEYVYKGQLQSAPS_______ R T I Y K G 2 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 2 0 2 1 0 0 11 0 1270.6809 G8JLQ3;P78537 G8JLQ3 57 67 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 2 0.0002101 99.653 By MS/MS By matching By matching 2 1 1 1.0268 0.97046 19.755 4 Median 0.98102 0.90642 1.207 2 0 Median 1.5829 1.3776 NaN 1 0 Median 1.0632 1.0302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27570000 13525000 14046000 22776000 11295000 11481000 110610 58008 52599 4683500 2171800 2511700 0 0 0 0 0 0 0 0 0 33108 1137 34811 173198;173199;173200;173201 174861 174861 1 TIAVDFASEDIYDKIK QVSSEIKEKFKVETRTIAVDFASEDIYDKI IAVDFASEDIYDKIKTGLAGLEIGILVNNV R T I I K T 2 0 0 3 0 0 1 0 0 3 0 2 0 1 0 1 1 0 1 1 0 0 16 1 1826.9302 Q53GQ0;A0A1B0GVY6;E9PI21 Q53GQ0 104 119 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes no 2 0.00063653 55.452 By MS/MS By matching 1 1 1.0137 0.95082 10.069 2 Median 1.0456 1.021 NaN 1 0 Median 0.98288 0.88548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4700000 2154100 2545900 4083400 1870000 2213400 616560 284050 332520 0 0 0 0 0 0 0 0 0 0 0 0 33109 3030 34812 173202;173203 174862 174862 1 TICSHVQNMIK VDKWWGNRKELATVRTICSHVQNMIKGVTL ATVRTICSHVQNMIKGVTLGFRYKMRSVYA R T I I K G 0 0 1 0 1 1 0 0 1 2 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1329.6533 D6RAN4;P32969;A0A2R8Y5Y7;E7ESE0;H0Y9R4 D6RAN4 72 82 RPL9 60S ribosomal protein L9 yes no 2;3 5.6219E-05 147.95 By matching By MS/MS By matching By matching By matching 2 2 1 2 1 1.1702 1.0321 11.006 8 Median 1.0582 0.9836 6.9175 2 0 Median 1.238 1.0339 0.65173 2 0 Median 1.4126 1.3591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9861 1.0088 3.1299 2 0 Median 1.2429 1.0353 NaN 1 0 Median 74420000 33631000 40790000 33084000 15030000 18053000 33941000 15080000 18860000 2041600 1066600 974980 0 0 0 4919000 2270400 2648600 435690 183000 252680 33110 812 34813 173204;173205;173206;173207;173208;173209;173210;173211 174863;174864;174865;174866 174866 4 TIDDLEDK TRAEFAERSVAKLEKTIDDLEDKLKCTKEE SVAKLEKTIDDLEDKLKCTKEEHLCTQRML K T I D K L 0 0 0 3 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 947.44476 A0A087WWU8;J3KN67 A0A087WWU8 195 202 TPM3 no no 2 0.025516 42.599 By MS/MS 1 1.2212 1.0328 NaN 1 Median NaN NaN NaN 0 0 Median 1.2212 1.0328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1432000 608660 823340 0 0 0 1432000 608660 823340 0 0 0 0 0 0 0 0 0 0 0 0 33111 63;1303 34814 173212 174867 174867 1 TIDDLEDKLK TRAEFAERSVAKLEKTIDDLEDKLKCTKEE AKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ K T I L K C 0 0 0 3 0 0 1 0 0 1 2 2 0 0 0 0 1 0 0 0 0 0 10 1 1188.6238 A0A087WWU8;J3KN67 A0A087WWU8 195 204 TPM3 no no 2;3 0.0019493 90.629 By MS/MS By MS/MS By MS/MS 1 3 1 0.78524 0.71131 71.411 2 Median NaN NaN NaN 0 0 Median 0.78524 0.71131 71.411 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49335000 22200000 27134000 4878900 0 4878900 42260000 22200000 20060000 2195400 0 2195400 0 0 0 0 0 0 0 0 0 33112 63;1303 34815 173213;173214;173215;173216;173217 174868;174869;174870;174871;174872;174873 174872 6 TIDDLEEK TRAEFAERTVAKLEKTIDDLEEKLAQAKEE TVAKLEKTIDDLEEKLAQAKEENVGLHQTL K T I E K L 0 0 0 2 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 961.46041 P67936;A0A2R8YE05;K7ENT6;K7EPB9 P67936 216 223 TPM4 Tropomyosin alpha-4 chain yes no 2 0.0065172 70.919 By MS/MS By MS/MS 1 2 1.0397 0.96109 13.787 3 Plateau 1.0426 0.96971 NaN 1 0 Median 0.90582 0.76421 1.4212 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14689000 6841900 7847600 9057500 3932200 5125300 5632000 2909700 2722300 0 0 0 0 0 0 0 0 0 0 0 0 33113 2629 34816 173218;173219;173220 174874;174875;174876;174877;174878 174875 5 TIDDLKNQILNLTTDNANILLQIDNAR NSHQGEPRDYSKYYKTIDDLKNQILNLTTD TTDNANILLQIDNARLAADDFRLKYENEVA K T I A R L 2 1 5 4 0 2 0 0 0 4 5 1 0 0 0 0 3 0 0 0 0 0 27 1 3051.62 P13645;CON__P13645 P13645 202 228 KRT10 Keratin, type I cytoskeletal 10 yes no 3 1.7986E-05 39.883 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 892170 892170 0 0 0 0 0 0 0 0 0 0 0 0 0 892170 892170 0 0 0 0 + 33114 756 34817 173221 174879 174879 1 TIDEELER PLYMGPEYIKYFNDKTIDEELERDKRVTWI IKYFNDKTIDEELERDKRVTWIVEFFANWS K T I E R D 0 1 0 1 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1003.4822 Q9Y320 Q9Y320 145 152 TMX2 Thioredoxin-related transmembrane protein 2 yes yes 2 0.0073692 81.548 By MS/MS 1 1.0722 0.86328 NaN 1 Median NaN NaN NaN 0 0 Median 1.0722 0.86328 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13793000 6164200 7628900 0 0 0 13793000 6164200 7628900 0 0 0 0 0 0 0 0 0 0 0 0 33115 4404 34818 173222 174880 174880 1 TIDEGDADEVTK GIPIGEGAHDEEVLKTIDEGDADEVTKQRI VLKTIDEGDADEVTKQRIHDGKEKPGALWH K T I T K Q 1 0 0 3 0 0 2 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 12 0 1291.578 Q7LBC6 Q7LBC6 1589 1600 KDM3B Lysine-specific demethylase 3B yes yes 2 0.00059476 72.006 By MS/MS By MS/MS By MS/MS 1 2 1 0.87138 0.86176 29.751 4 Median 0.72019 0.67851 NaN 1 0 Median 1.2577 1.0994 32.07 2 0 Median 0.76217 0.84744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7149300 3435100 3714200 1876000 1094800 781210 3356400 1313400 2043000 1916800 1026900 889920 0 0 0 0 0 0 0 0 0 33116 3230 34819 173223;173224;173225;173226 174881;174882;174883 174883 3 TIDEVVEK IAEKDIETVRSLIDRTIDEVVEKGFEDDRI VRSLIDRTIDEVVEKGFEDDRIEALLHKIE R T I E K G 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 8 0 931.48623 Q5JRX3;H0Y4F7 Q5JRX3 411 418 PITRM1 Presequence protease, mitochondrial yes no 2 0.0044852 81.296 By MS/MS By MS/MS 1 1 1.1338 1.0353 7.8108 2 Median 0.99331 0.97965 NaN 1 0 Median 1.2941 1.0941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16520000 7598100 8922400 3512700 1851300 1661400 13008000 5746800 7261000 0 0 0 0 0 0 0 0 0 0 0 0 33117 3050 34820 173227;173228 174884;174885;174886;174887 174887 4 TIDLGAAAHYTGDK ETTTTRHKRTANPSKTIDLGAAAHYTGDKA KTIDLGAAAHYTGDKASPDQNASTHTPQSS K T I D K A 3 0 0 2 0 0 0 2 1 1 1 1 0 0 0 0 2 0 1 0 0 0 14 0 1431.6994 Q14677 Q14677 284 297 CLINT1 Clathrin interactor 1 yes yes 2 0.049388 24.343 By matching By matching By MS/MS 1 1 1 0.9398 0.80472 12.807 3 Median 1.0107 0.97278 NaN 1 0 Median 0.88282 0.76222 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9398 0.80472 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7091800 3402000 3689800 3461700 1717300 1744400 2312400 1051300 1261100 0 0 0 1317700 633390 684280 0 0 0 0 0 0 33118 2888 34821 173229;173230;173231 174888 174888 1 TIDNADSSTLHAVTFLR GRINLFRADHKEAVRTIDNADSSTLHAVTF DNADSSTLHAVTFLRTPEILTVNSIGQLKI R T I L R T 2 1 1 2 0 0 0 0 1 1 2 0 0 1 0 2 3 0 0 1 0 0 17 0 1859.9377 Q8NFH3 Q8NFH3 166 182 NUP43 Nucleoporin Nup43 yes yes 2;3 4.3102E-13 132.97 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 3 2 1.0932 1.1149 10.408 10 Median 1.0559 1.049 2.945 2 0 Median 1.0236 0.8936 NaN 1 0 Median 1.0775 1.1833 3.65 2 0 Median 1.3066 1.1161 0.92335 3 0 Median 0.99321 1.0136 17.124 2 0 Median NaN NaN NaN 0 0 Median 203350000 98002000 105350000 16079000 8010100 8068800 7747400 3415000 4332400 166470000 80845000 85622000 6303500 2712400 3591100 6752900 3019400 3733400 0 0 0 33119 3435 34822 173232;173233;173234;173235;173236;173237;173238;173239;173240;173241 174889;174890;174891;174892;174893;174894;174895;174896;174897 174895 9 TIDPELLGK YNLTADPDQITNIAKTIDPELLGKMNYRLM ITNIAKTIDPELLGKMNYRLMMLQSCSGPT K T I G K M 0 0 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 9 0 984.54916 P15586;H7C3P4;F6S8M0;H0YFA9 P15586 494 502 GNS N-acetylglucosamine-6-sulfatase yes no 2 0.0075799 53.775 By MS/MS 2 0.56819 0.52291 63.754 2 Median 0.56819 0.52291 63.754 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20963000 14463000 6500500 20963000 14463000 6500500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33120 2019 34823 173242;173243 174898;174899 174899 2 TIDQIHKEAEMEEHREHIK RGSNWVPRRGDQGPKTIDQIHKEAEMEEHR IHKEAEMEEHREHIKVQQLMAKGSDKRRGG K T I I K V 1 1 0 1 0 1 5 0 3 3 0 2 1 0 0 0 1 0 0 0 0 0 19 2 2372.1543 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 838 856 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 4 0.0074344 23.683 By MS/MS By matching 1 1 1.0964 1.2957 14.691 2 Median 1.1048 1.1679 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0881 1.4375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16885000 7879100 9005600 14700000 7137300 7562800 0 0 0 2184600 741790 1442800 0 0 0 0 0 0 0 0 0 33121 894 34824 173244;173245 174900;174901 174900 2 TIDSSSLSHQER VRSKRHKQCFCDDGKTIDSSSLSHQERSRE DGKTIDSSSLSHQERSRESLSVHQTLSAIL K T I E R S 0 1 0 1 0 1 1 0 1 1 1 0 0 0 0 4 1 0 0 0 0 0 12 0 1358.6426 D6RJB7;Q8N7Z5 D6RJB7 1367 1378 ANKRD31 Putative ankyrin repeat domain-containing protein 31 yes no 3 0.064576 11.919 By MS/MS 1 0.3621 0.319 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3621 0.319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6229200 4153900 2075300 0 0 0 0 0 0 0 0 0 6229200 4153900 2075300 0 0 0 0 0 0 33122 830 34825 173246 174902 174902 1 TIDVFDGNSGK YPDPNFKSCTPYELRTIDVFDGNSGKMMCQ YELRTIDVFDGNSGKMMCQLYDPESSGISS R T I G K M 0 0 1 2 0 0 0 2 0 1 0 1 0 1 0 1 1 0 0 1 0 0 11 0 1151.5459 Q92466 Q92466 371 381 DDB2 DNA damage-binding protein 2 yes yes 2 0.00013795 145.72 By MS/MS By MS/MS 4 1 0.80852 0.78396 29.94 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77569 0.77005 7.2292 4 0 Median 1.6164 1.4543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34337000 16456000 17881000 0 0 0 0 0 0 19986000 11092000 8893700 14351000 5364000 8987100 0 0 0 0 0 0 33123 3527 34826 173247;173248;173249;173250;173251 174903;174904;174905 174905 3 TIEAEAAHGTVTR SLGLMTSVLVCPDGKTIEAEAAHGTVTRHY GKTIEAEAAHGTVTRHYREHQKGRPTSTNP K T I T R H 3 1 0 0 0 0 2 1 1 1 0 0 0 0 0 0 3 0 0 1 0 0 13 0 1354.6841 P48735;H0YL11 P48735 341 353 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 2;3 3.8838E-07 115.18 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 2 1.4653 1.3371 26.379 11 Median 0.90488 0.88093 10.377 2 0 Median 1.759 1.5152 6.3284 4 0 Median 0.90949 0.9012 30.441 3 0 Median 1.3611 1.1865 16.906 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29473000 13451000 16022000 12466000 6640900 5825300 11261000 4035700 7225400 3419500 1933400 1486100 2325900 840770 1485100 0 0 0 0 0 0 33124 2367 34827 173252;173253;173254;173255;173256;173257;173258;173259;173260;173261;173262 174906;174907;174908;174909;174910;174911;174912;174913;174914;174915;174916;174917;174918;174919;174920;174921;174922;174923 174909 18 TIEALMDR LKAMQRPETAATLKRTIEALMDRGAIVRDL TAATLKRTIEALMDRGAIVRDLENLGERAL R T I D R G 1 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 8 0 947.47462 P82932 P82932 25 32 MRPS6 28S ribosomal protein S6, mitochondrial yes yes 2 0.0032009 100.45 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0203 0.96465 11.146 5 Median 0.96071 0.93403 NaN 1 1 Median 1.2423 1.0541 1.5725 2 0 Median 0.951 0.96465 NaN 1 0 Median 1.0203 0.80457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32244000 15211000 17033000 10277000 5167300 5109900 14223000 6128400 8094700 6497200 3297600 3199600 1245900 617650 628300 0 0 0 0 0 0 33125 2658 34828;34829 173263;173264;173265;173266;173267 174924;174925;174926;174927;174928;174929 174926 1344 6 TIEDDLVSALVR GYHGMQRNVGSSQFKTIEDDLVSALVRSGC QFKTIEDDLVSALVRSGCIPENHGEDMRKM K T I V R S 1 1 0 2 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1329.714 Q9Y606;F5H1S9;G8JLB3;F5GY32;F5H1B2;F5H168;F8W9U5;F5GXL3 Q9Y606 111 122 PUS1 tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase yes no 2 3.5626E-06 114.5 By MS/MS By matching By matching By MS/MS 1 3 1 1 0.64797 0.61207 112.25 6 Median 0.80771 0.82697 NaN 1 0 Median 1.1671 1.0181 155.31 3 0 Plateau 0.87104 0.89158 NaN 1 0 Median 0.4562 0.37988 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28255000 18046000 10208000 859400 448730 410670 9013200 4647100 4366000 559370 291080 268290 17823000 12659000 5163500 0 0 0 0 0 0 33126 4475 34830 173268;173269;173270;173271;173272;173273 174930;174931 174931 2 TIEDLATQLNLK ALKRAYQQKPYPSPKTIEDLATQLNLKTST SPKTIEDLATQLNLKTSTVINWFHNYRSRI K T I L K T 1 0 1 1 0 1 1 0 0 1 3 1 0 0 0 0 2 0 0 0 0 0 12 0 1357.7453 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 1228 1239 no no 2 0.00055672 75.294 By MS/MS By matching 1 1 1.0261 1.0108 28.564 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1111 1.237 NaN 1 0 Median 0.9476 0.82593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6541300 3179100 3362200 0 0 0 0 0 0 5994900 2884300 3110600 546420 294840 251580 0 0 0 0 0 0 33127 388 34831 173274;173275 174932;174933 174933 2 TIEELQNK RQAPGPARDYSQYYRTIEELQNKILTATVD DYSQYYRTIEELQNKILTATVDNANILLQI R T I N K I 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 973.50803 CON__Q04695;Q04695;F5GWP8;K7EPJ9 CON__Q04695 137 144 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0039759 84.244 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 4 0.77584 0.64172 48.539 9 Median NaN NaN NaN 0 0 Median 1.7508 1.4891 55.047 2 1 Median 1.4286 1.3953 NaN 1 0 Median 0.66367 0.59354 NaN 1 1 Median 1.1504 1.0956 NaN 1 0 Median 0.73292 0.60656 8.2231 4 0 Median 37206000 16670000 20536000 0 0 0 7660000 1717300 5942700 7093700 2897900 4195700 3713200 2566300 1146900 6192300 2588100 3604200 12547000 6900100 5646400 + 33128 768 34832 173276;173277;173278;173279;173280;173281;173282;173283;173284 174934;174935;174936;174937;174938;174939;174940;174941;174942;174943 174942 10 TIEEQLDEEHLESHKK NPGIAAKWWNPPQEKTIEEQLDEEHLESHK IEEQLDEEHLESHKKYKERKERRAQQEQLL K T I K K Y 0 0 0 1 0 1 5 0 2 1 2 2 0 0 0 1 1 0 0 0 0 0 16 1 1963.9487 C9JVY5;Q9Y2D5 C9JVY5 298 313 AKAP2 A-kinase anchor protein 2 yes no 3 0.024876 15.525 By matching By MS/MS 1 1 0.68912 0.71365 2.7066 2 Median NaN NaN NaN 0 0 Median 0.77621 0.72744 NaN 1 0 Median 0.6118 0.70012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4274000 2163400 2110600 0 0 0 1461700 725910 735800 2812300 1437500 1374800 0 0 0 0 0 0 0 0 0 33129 726 34833 173285;173286 174944 174944 1 TIEESEETLK SSYHKQQEELDALKKTIEESEETLKNTKEI DALKKTIEESEETLKNTKEIQRKAEEKYEV K T I L K N 0 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1177.5714 O95347 O95347 751 760 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00033468 106.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 0.9089 0.93282 12.039 5 Median 1.0922 1.0565 NaN 1 1 Median 1.1063 0.93282 NaN 1 0 Median 0.89357 0.95491 NaN 1 0 Median 0.89999 0.80049 1.058 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53271000 24934000 28337000 12149000 5662400 6486900 20453000 9288500 11165000 10404000 4842500 5561400 10265000 5140400 5124200 0 0 0 0 0 0 33130 1766 34834 173287;173288;173289;173290;173291 174945;174946;174947;174948;174949 174948 5 TIEESEETLKNTK SSYHKQQEELDALKKTIEESEETLKNTKEI KKTIEESEETLKNTKEIQRKAEEKYEVLEN K T I T K E 0 0 1 0 0 0 4 0 0 1 1 2 0 0 0 1 3 0 0 0 0 0 13 1 1520.757 O95347 O95347 751 763 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 0.00035484 59.185 By MS/MS By MS/MS 2 2 1.0506 1.1552 38.767 4 Median 0.94651 0.99786 2.5132 2 0 Median NaN NaN NaN 0 0 Median 1.5053 1.7268 38.66 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16890000 7357800 9532300 7313400 3783600 3529800 0 0 0 9576700 3574200 6002500 0 0 0 0 0 0 0 0 0 33131 1766 34835 173292;173293;173294;173295 174950;174951;174952;174953;174954 174954 5 TIEEVVGR KEEIFGPVMQILKFKTIEEVVGRANNSTYG MQILKFKTIEEVVGRANNSTYGLAAAVFTK K T I G R A 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 901.4869 P05091 P05091 429 436 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2 0.0029873 102.71 By MS/MS By MS/MS 1 1 1.3991 1.2622 27.938 2 Median 1.072 1.0359 NaN 1 0 Median 1.8261 1.5379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16025000 6459000 9565800 7816900 3916700 3900200 8207900 2542300 5665600 0 0 0 0 0 0 0 0 0 0 0 0 33132 1860 34836 173296;173297 174955;174956;174957 174956 3 TIEIESLNEVLK QTARIMELEDHITQKTIEIESLNEVLKNYN TQKTIEIESLNEVLKNYNQQKDIEHKELVQ K T I L K N 0 0 1 0 0 0 3 0 0 2 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1386.7606 Q13439;H0Y6I0 Q13439 1538 1549 GOLGA4 Golgin subfamily A member 4 yes no 2 0.0026977 74.162 By MS/MS 1 1.296 1.1339 NaN 1 Median NaN NaN NaN 0 0 Median 1.296 1.1339 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6133400 2533200 3600200 0 0 0 6133400 2533200 3600200 0 0 0 0 0 0 0 0 0 0 0 0 33133 1156 34837 173298 174958 174958 1 TIEIQATNALDEK LRLQEENEKLKSRLKTIEIQATNALDEKSK LKTIEIQATNALDEKSKLEKALQDLQLDQG K T I E K S 2 0 1 1 0 1 2 0 0 2 1 1 0 0 0 0 2 0 0 0 0 0 13 0 1444.7409 Q9NQ48 Q9NQ48 170 182 LZTFL1 Leucine zipper transcription factor-like protein 1 yes yes 2 0.00058618 69.979 By MS/MS 1 0.6554 0.6269 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6554 0.6269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3468600 2316300 1152300 0 0 0 0 0 0 3468600 2316300 1152300 0 0 0 0 0 0 0 0 0 33134 4059 34838 173299 174959 174959 1 TIEKFEK TTGHLIYKCGGIDKRTIEKFEKEAAEMGKG KCGGIDKRTIEKFEKEAAEMGKGSFKYAWV R T I E K E 0 0 0 0 0 0 2 0 0 1 0 2 0 1 0 0 1 0 0 0 0 0 7 1 893.48583 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 38 44 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 0.010684 120.46 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 8 4 6 6 3 4 1.0937 1.0812 19.688 31 Median 1.1142 1.0872 17.384 8 0 Median 1.078 0.98944 9.9469 4 0 Median 1.1828 1.2832 9.7467 6 0 Median 1.0235 0.93625 11.445 6 0 Median 1.5094 1.5813 10.55 3 0 Median 1.0426 0.93612 8.9054 4 0 Median 122810000 56589000 66221000 47885000 21514000 26372000 24718000 11572000 13146000 27400000 12455000 14945000 15853000 7835800 8016900 3466800 1539400 1927300 3487100 1672900 1814100 33135 2632;404 34839 173300;173301;173302;173303;173304;173305;173306;173307;173308;173309;173310;173311;173312;173313;173314;173315;173316;173317;173318;173319;173320;173321;173322;173323;173324;173325;173326;173327;173328;173329;173330 174960;174961;174962;174963;174964;174965;174966;174967;174968;174969;174970 174967 11 TIEKFEKEAAEMGK TTGHLIYKCGGIDKRTIEKFEKEAAEMGKG RTIEKFEKEAAEMGKGSFKYAWVLDKLKAE R T I G K G 2 0 0 0 0 0 4 1 0 1 0 3 1 1 0 0 1 0 0 0 0 0 14 2 1609.8022 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 38 51 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 3;4 1.2183E-08 105.14 By MS/MS By MS/MS 2 2 1.0351 1.1029 14.239 4 Median 1.1768 1.2614 6.0274 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 0.99374 1.7874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30062000 14644000 15418000 12285000 6443900 5840800 0 0 0 0 0 0 17777000 8199800 9577500 0 0 0 0 0 0 33136 2632;404 34840;34841 173331;173332;173333;173334 174971;174972;174973;174974 174973 187 4 TIEQNINNLNVSEADRK TTKKAVKPKKKHLHRTIEQNINNLNVSEAD EQNINNLNVSEADRKCEIDPMFQKTAASFD R T I R K C 1 1 4 1 0 1 2 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1956.9865 E9PHA2;Q15003;C9J470 E9PHA2 211 227 NCAPH Condensin complex subunit 2 yes no 3 0.00012137 50.653 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.93076 0.98735 6.7078 5 Median 0.87895 0.90206 NaN 1 0 Median 1.0018 1.0049 NaN 1 0 Median 0.83938 0.9526 NaN 1 1 Median 1.0336 1.0334 6.443 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21025000 10802000 10223000 7271100 3939900 3331200 1125100 708020 417100 5883600 3294400 2589200 6745200 2859400 3885800 0 0 0 0 0 0 33137 929 34842 173335;173336;173337;173338;173339 174975;174976;174977;174978 174975 4 TIEVLQLQDQGSK SLSIKVEESYAMPTKTIEVLQLQDQGSKML TKTIEVLQLQDQGSKMLLDSVLTTHERVVQ K T I S K M 0 0 0 1 0 3 1 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1457.7726 F5H702;Q96GC5 F5H702 32 44 MRPL48 39S ribosomal protein L48, mitochondrial yes no 2 1.6766E-22 201.33 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2752 1.1395 6.6348 4 Median 1.0972 1.0316 NaN 1 0 Median 1.3847 1.1882 NaN 1 0 Median 1.1743 1.1008 NaN 1 0 Median 1.4248 1.1796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59666000 28268000 31398000 35069000 17337000 17733000 5153600 2143600 3010000 17398000 7997900 9399600 2045500 789330 1256200 0 0 0 0 0 0 33138 1044 34843 173340;173341;173342;173343 174979;174980;174981;174982;174983;174984 174981 6 TIEYLQPNPASR KVDVTSKAVTEVLARTIEYLQPNPASRAKL LARTIEYLQPNPASRAKLTMLNTVSKIRGQ R T I S R A 1 1 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 0 1 0 0 0 12 0 1387.7096 Q99961;M0QYE0;M0R0I3 Q99961 54 65 SH3GL1 Endophilin-A2 no no 2 2.4505E-07 119.68 By MS/MS 2 0.71659 0.70201 6.8521 2 Median 0.71659 0.70201 6.8521 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17442000 9683400 7758300 17442000 9683400 7758300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33139 3774 34844 173344;173345 174985;174986 174985 2 TIFAYFTGSK GFEEFHRAVEQHNGKTIFAYFTGSKDAGGK QHNGKTIFAYFTGSKDAGGKSWCPDCVQAE K T I S K D 1 0 0 0 0 0 0 1 0 1 0 1 0 2 0 1 2 0 1 0 0 0 10 0 1133.5757 Q9BRA2;I3L0K2;I3L3M7 Q9BRA2 26 35 TXNDC17 Thioredoxin domain-containing protein 17 yes no 2 0.00048844 73.985 By MS/MS By MS/MS 1 1 1.2512 1.0729 3.374 2 Median 1.229 1.0988 NaN 1 0 Median 1.2739 1.0476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 203520000 90826000 112690000 185130000 82918000 102210000 18384000 7908300 10475000 0 0 0 0 0 0 0 0 0 0 0 0 33140 3793 34845 173346;173347 174987;174988;174989;174990;174991;174992;174993 174990 7 TIFFKDDGNYK DFFKSAMPEGYVQERTIFFKDDGNYKTRAE VQERTIFFKDDGNYKTRAEVKFEGDTLVNR R T I Y K T 0 0 1 2 0 0 0 1 0 1 0 2 0 2 0 0 1 0 1 0 0 0 11 1 1346.6507 CON__Q9U6Y5 CON__Q9U6Y5 97 107 yes yes 2;3 5.5525E-15 192.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 24 12 11 10 13 7 1.2631 1.2116 90.311 77 Median 1.1234 1.0753 18.66 24 1 Median 1.0868 0.99221 23.763 12 0 Median 1.3091 1.3573 34.591 11 2 Median 1.7326 1.5509 31.402 10 3 Median 9.1348 9.7376 156.74 13 5 Median 4.8065 4.0831 28.854 7 0 Median 5695200000 2317800000 3377400000 4111900000 1833800000 2278100000 346810000 157860000 188950000 274640000 116020000 158620000 410170000 133900000 276280000 459990000 60767000 399220000 91755000 15513000 76243000 + 33141 795 34846 173348;173349;173350;173351;173352;173353;173354;173355;173356;173357;173358;173359;173360;173361;173362;173363;173364;173365;173366;173367;173368;173369;173370;173371;173372;173373;173374;173375;173376;173377;173378;173379;173380;173381;173382;173383;173384;173385;173386;173387;173388;173389;173390;173391;173392;173393;173394;173395;173396;173397;173398;173399;173400;173401;173402;173403;173404;173405;173406;173407;173408;173409;173410;173411;173412;173413;173414;173415;173416;173417;173418;173419;173420;173421;173422;173423;173424 174994;174995;174996;174997;174998;174999;175000;175001;175002;175003;175004;175005;175006;175007;175008;175009;175010;175011;175012;175013;175014;175015;175016;175017;175018;175019;175020;175021;175022;175023;175024;175025;175026;175027;175028;175029;175030;175031;175032;175033;175034;175035;175036;175037;175038;175039;175040;175041;175042;175043;175044;175045;175046;175047;175048;175049;175050;175051;175052;175053;175054;175055;175056;175057;175058;175059;175060;175061;175062;175063;175064;175065;175066;175067;175068;175069;175070;175071;175072;175073;175074;175075;175076;175077;175078;175079;175080;175081;175082;175083;175084;175085;175086;175087;175088;175089;175090;175091;175092;175093;175094;175095;175096;175097;175098;175099;175100;175101;175102 175014 109 TIFFKDDGNYKTR DFFKSAMPEGYVQERTIFFKDDGNYKTRAE ERTIFFKDDGNYKTRAEVKFEGDTLVNRIE R T I T R A 0 1 1 2 0 0 0 1 0 1 0 2 0 2 0 0 2 0 1 0 0 0 13 2 1603.7995 CON__Q9U6Y5 CON__Q9U6Y5 97 109 yes yes 3;4 0.00081558 59.185 By MS/MS By matching 3 1 1.1387 1.2013 16.709 4 Median 1.17 1.2299 13.006 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91347 0.99926 NaN 1 0 Median NaN NaN NaN 0 0 Median 45807000 22939000 22868000 21674000 9488800 12185000 0 0 0 0 0 0 0 0 0 24133000 13450000 10683000 0 0 0 + 33142 795 34847 173425;173426;173427;173428 175103;175104;175105 175104 3 TIFLLHR RLVKLSRDITVESKRTIFLLHRITSAPDME DITVESKRTIFLLHRITSAPDMEDILTESE R T I H R I 0 1 0 0 0 0 0 0 1 1 2 0 0 1 0 0 1 0 0 0 0 0 7 0 898.53887 Q99598;C4P0D6;C4P0D8;Q5VVQ1;C4P0D4 Q99598 70 76 TSNAX;DISC1 Translin-associated protein X yes no 2 0.0031639 121.68 By MS/MS By MS/MS By matching 1 1 1 1.3664 1.1388 12.518 3 Median 1.149 1.0744 NaN 1 0 Median 1.3664 1.1388 NaN 1 0 Median 1.4265 1.3658 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35625000 16927000 18698000 29236000 14077000 15159000 5157400 2232700 2924700 1231400 616810 614620 0 0 0 0 0 0 0 0 0 33143 3756 34848 173429;173430;173431 175106;175107;175108;175109 175107 4 TIFPLFMK GTDNCHKFVDILGLRTIFPLFMKSPRKIKK VDILGLRTIFPLFMKSPRKIKKVGTTEKEH R T I M K S 0 0 0 0 0 0 0 0 0 1 1 1 1 2 1 0 1 0 0 0 0 0 8 0 995.55141 Q8WYA6;A0A087WUB9 Q8WYA6 381 388 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.060654 32.47 By matching By matching By MS/MS By matching 1 1 1 2 0.88056 0.88385 16.324 5 Median 1.0968 1.059 NaN 1 0 Median 1.1404 0.97499 NaN 1 0 Median 0.88056 0.88385 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76845 0.75128 10.904 2 0 Median NaN NaN NaN 0 0 Median 25059000 13189000 11871000 2176700 1077600 1099100 3910600 1913400 1997200 17304000 9316100 7988000 0 0 0 1668100 881730 786370 0 0 0 33144 28 34849 173432;173433;173434;173435;173436 175110 175110 1 TIFQGIAAK SLMPGGNKEAWPHIKTIFQGIAAKVGTGEP AWPHIKTIFQGIAAKVGTGEPCCDWVGDEG K T I A K V 2 0 0 0 0 1 0 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 9 0 947.54402 P52209;K7EMN2;K7EM49;K7EPF6 P52209 155 163 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.0016555 79.116 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1108 0.99816 5.7003 5 Median 1.1144 1.037 9.621 2 0 Median 1.252 1.0571 NaN 1 0 Median 1.0116 0.98163 NaN 1 0 Median 1.1108 0.99816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109250000 48503000 60742000 44243000 19041000 25202000 45951000 20259000 25692000 9708600 5240800 4467800 9342500 3962000 5380600 0 0 0 0 0 0 33145 2447 34850 173437;173438;173439;173440;173441 175111;175112;175113;175114;175115;175116;175117;175118 175112 8 TIFTGHTAVVEDVSWHLLHESLFGSVADDQK DISAVPKEGKVVDAKTIFTGHTAVVEDVSW LLHESLFGSVADDQKLMIWDTRSNNTSKPS K T I Q K L 2 0 0 3 0 1 2 2 3 1 3 1 0 2 0 3 3 1 0 4 0 0 31 0 3437.6892 Q09028 Q09028 221 251 RBBP4 Histone-binding protein RBBP4 yes yes 4 1.6583E-15 61.89 By MS/MS By MS/MS 1 1 1.0354 0.94324 8.0917 2 Median NaN NaN NaN 0 0 Median 1.1739 0.99878 NaN 1 1 Median 0.91326 0.89079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12714000 5123500 7590600 0 0 0 5271700 1543400 3728300 7442400 3580100 3862300 0 0 0 0 0 0 0 0 0 33146 2746 34851 173442;173443 175119;175120;175121 175119 3 TIGDLSTLTASEIK WARGLGQLIRAKNIKTIGDLSTLTASEIKT KTIGDLSTLTASEIKTLPIRSPKVSNVKKA K T I I K T 1 0 0 1 0 0 1 1 0 2 2 1 0 0 0 2 3 0 0 0 0 0 14 0 1447.777 Q5UIP0;H7C2B5 Q5UIP0 2329 2342 RIF1 Telomere-associated protein RIF1 yes no 2 0.00018717 78.653 By MS/MS By matching By MS/MS By matching 2 4 2 1 1.0912 1.0434 10.605 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0388 1.1146 8.9442 2 0 Median 1.2016 0.9975 12.834 4 0 Median 1.0561 1.0849 NaN 1 0 Median 1.1128 0.96063 NaN 1 0 Median 10527000 4923900 5602700 0 0 0 0 0 0 8563900 4036700 4527200 732850 338840 394010 1080800 484620 596160 149000 63724 85279 33147 3109 34852 173444;173445;173446;173447;173448;173449;173450;173451;173452 175122;175123 175122 2 TIGDMFQNQDR SEGKGRLMPGQDPEKTIGDMFQNQDRNQDG DPEKTIGDMFQNQDRNQDGKITVDELKLKS K T I D R N 0 1 1 2 0 2 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 11 0 1323.5877 Q96AY3;H0Y827 Q96AY3 546 556 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 yes no 2 0.00054228 71.349 By MS/MS By MS/MS 1 2 1.2479 1.0833 39.719 3 Median 0.8735 0.83395 NaN 1 0 Median 1.5756 1.4041 36.685 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9403200 4291000 5112200 5592100 2769400 2822700 3811000 1521500 2289500 0 0 0 0 0 0 0 0 0 0 0 0 33148 3603 34853 173453;173454;173455 175124;175125 175125 1 TIGGGDDSFNTFFSETGAGK LEHGIQPDGQMPSDKTIGGGDDSFNTFFSE DDSFNTFFSETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 1 2 0 0 1 5 0 1 0 1 0 3 0 2 3 0 0 0 0 0 20 0 2006.8858 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VRZ4;F8VS66;F8VX09;F8VWV9;F8VRK0;F8W0F6;F8VXZ7;P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;F8VQQ4 P68363 41 60 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 6.6124E-22 167.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 14 8 11 9 6 4 1.2057 1.073 22.883 52 Median 1.0972 1.0439 7.4967 14 3 Median 1.1649 0.98319 8.9813 8 0 Median 1.2211 1.2471 16.921 11 1 Median 1.2521 1.0853 6.7038 9 0 Median 2.0435 1.9797 5.6036 6 0 Median 1.2854 1.068 1.3268 4 0 Median 1157800000 528520000 629320000 720170000 339550000 380610000 92540000 42294000 50247000 254130000 114200000 139930000 19085000 8255100 10830000 62514000 20249000 42266000 9404500 3967800 5436600 33149 2633;3212;1034 34854 173456;173457;173458;173459;173460;173461;173462;173463;173464;173465;173466;173467;173468;173469;173470;173471;173472;173473;173474;173475;173476;173477;173478;173479;173480;173481;173482;173483;173484;173485;173486;173487;173488;173489;173490;173491;173492;173493;173494;173495;173496;173497;173498;173499;173500;173501;173502;173503;173504;173505;173506;173507 175126;175127;175128;175129;175130;175131;175132;175133;175134;175135;175136;175137;175138;175139;175140;175141;175142;175143;175144;175145;175146;175147;175148;175149;175150;175151;175152;175153;175154;175155;175156;175157;175158;175159;175160;175161;175162;175163;175164;175165;175166;175167;175168;175169;175170;175171;175172;175173;175174;175175;175176;175177;175178;175179;175180 175157 55 TIGISVDPR LEELRVAGIHKKVARTIGISVDPRRRNKST HKKVARTIGISVDPRRRNKSTESLQANVQR R T I P R R 0 1 0 1 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 1 0 0 9 0 956.5291 P26373;J3QSB4 P26373 93 101 RPL13 60S ribosomal protein L13 yes no 2 0.00088636 92.439 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 4 2 1.0214 0.94387 16.69 14 Median 0.95337 0.90851 25.228 3 1 Median 1.0243 0.85933 0.36543 2 0 Median 1.0302 0.98931 NaN 1 0 Median 1.3753 1.1141 14.165 2 0 Median 0.95589 0.98928 10.451 4 1 Median 1.1791 0.94556 1.4378 2 0 Median 715850000 349320000 366530000 309400000 155050000 154350000 127310000 60654000 66655000 29742000 14423000 15319000 8807700 3936900 4870900 172590000 84794000 87792000 67998000 30461000 37537000 33150 2144 34855 173508;173509;173510;173511;173512;173513;173514;173515;173516;173517;173518;173519;173520;173521 175181;175182;175183;175184;175185;175186;175187;175188;175189;175190;175191;175192;175193;175194;175195;175196;175197;175198;175199;175200;175201;175202;175203;175204;175205;175206 175205 26 TIGSGEPGVPTKK KSSMRIVVDSESRKRTIGSGEPGVPTKKTW KRTIGSGEPGVPTKKTWFDKPNFNRTNSPG R T I K K T 0 0 0 0 0 0 1 3 0 1 0 2 0 0 2 1 2 0 0 1 0 0 13 1 1269.6929 Q5T8P6 Q5T8P6 493 505 RBM26 RNA-binding protein 26 no no 3 0.05338 12.146 By matching By MS/MS 1 1 0.67552 0.76842 22.151 2 Median 0.79067 0.89872 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57714 0.65701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1276500 673190 603270 546260 297940 248310 0 0 0 730200 375250 354950 0 0 0 0 0 0 0 0 0 33151 3097 34856 173522;173523 175207 175207 1 TIGTGLVTNTLAMTEEEK ILEKGQRFTLRDGNRTIGTGLVTNTLAMTE TGLVTNTLAMTEEEKNIKWG__________ R T I E K N 1 0 1 0 0 0 3 2 0 1 2 1 1 0 0 0 5 0 0 1 0 0 18 0 1906.9558 P49411 P49411 430 447 TUFM Elongation factor Tu, mitochondrial yes yes 2 8.3424E-15 108.59 By matching By MS/MS By MS/MS 1 3 2 1.1637 1.0531 10.434 6 Median 0.93555 0.88332 NaN 1 0 Median 1.3342 1.1364 3.784 3 0 Median 1.0497 1.0085 0.85562 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82042000 35157000 46885000 2765400 1508000 1257500 31724000 13557000 18167000 47553000 20092000 27461000 0 0 0 0 0 0 0 0 0 33152 2382 34857 173524;173525;173526;173527;173528;173529 175208;175209;175210 175209 3 TIGTGLVTNTLAMTEEEKNIK ILEKGQRFTLRDGNRTIGTGLVTNTLAMTE VTNTLAMTEEEKNIKWG_____________ R T I I K W 1 0 2 0 0 0 3 2 0 2 2 2 1 0 0 0 5 0 0 1 0 0 21 1 2262.1777 P49411 P49411 430 450 TUFM Elongation factor Tu, mitochondrial yes yes 3 7.1037E-09 54.271 By MS/MS 1 0.98648 0.94254 NaN 1 Median 0.98648 0.94254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11076000 5269000 5807300 11076000 5269000 5807300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33153 2382 34858 173530 175211;175212 175212 2 TIGVDFLER IQRYCKGIFTKDYKKTIGVDFLERQIQVND TKDYKKTIGVDFLERQIQVNDEDVRLMLWD K T I E R Q 0 1 0 1 0 0 1 1 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1048.5553 Q9ULC3 Q9ULC3 41 49 RAB23 Ras-related protein Rab-23 yes yes 2 0.017009 42.109 By MS/MS 1 0.92918 0.87636 NaN 1 Median 0.92918 0.87636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3042500 1460500 1582000 3042500 1460500 1582000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33154 4322 34859 173531 175213 175213 1 TIGVMTMVHGDNMGLVLPPR EKQFAYQNSWGLTTRTIGVMTMVHGDNMGL TMVHGDNMGLVLPPRVACVQVVIIPCGITN R T I P R V 0 1 1 1 0 0 0 3 1 1 2 0 3 0 2 0 2 0 0 3 0 0 20 0 2137.0846 P07814 P07814 1279 1298 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 1.2538E-07 57.745 By MS/MS By MS/MS 1 1 0.83861 0.75729 8.8445 2 Median 0.74235 0.71138 NaN 1 0 Median 0.94735 0.80616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8290700 4443600 3847100 4714400 2724600 1989800 3576300 1719000 1857300 0 0 0 0 0 0 0 0 0 0 0 0 33155 1892 34860 173532;173533 175214;175215 175214 2 TIHGVGEMMTQMVLSR ERLSKFQDGGNNVMRTIHGVGEMMTQMVLS IHGVGEMMTQMVLSRGSIFPMSVPDVPPSI R T I S R G 0 1 0 0 0 1 1 2 1 1 1 0 3 0 0 1 2 0 0 2 0 0 16 0 1788.8685 Q14571 Q14571 920 935 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 3 3.7712E-05 61.097 By MS/MS 1 0.72585 0.73147 NaN 1 Median 0.72585 0.73147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3730800 2076500 1654300 3730800 2076500 1654300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33156 2882 34861 173534 175216;175217 175216 2 TIHLSSIRPPR NADAIVVKLNSGDYKTIHLSSIRPPRLEGE GDYKTIHLSSIRPPRLEGENTQDKNKKLRP K T I P R L 0 2 0 0 0 0 0 0 1 2 1 0 0 0 2 2 1 0 0 0 0 0 11 1 1275.7412 Q7KZF4 Q7KZF4 367 377 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 4.3449E-05 93.442 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.88249 0.9213 16.904 7 Median 0.77874 0.8652 1.1121 2 0 Median 0.995 0.95926 5.7105 2 0 Median 0.88249 1.0197 NaN 1 0 Median 0.90628 0.84853 36.707 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54851000 28271000 26580000 21296000 12079000 9216300 15846000 7620800 8224900 9035300 4489700 4545500 8674600 4080900 4593700 0 0 0 0 0 0 33157 3214 34862 173535;173536;173537;173538;173539;173540;173541 175218;175219;175220;175221;175222;175223;175224;175225;175226;175227;175228;175229;175230;175231 175231 14 TIHLSSIRPPRLEGENTQDK NADAIVVKLNSGDYKTIHLSSIRPPRLEGE SIRPPRLEGENTQDKNKKLRPLYDIPYMFE K T I D K N 0 2 1 1 0 1 2 1 1 2 2 1 0 0 2 2 2 0 0 0 0 0 20 2 2290.203 Q7KZF4 Q7KZF4 367 386 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 7.1823E-05 37.969 By MS/MS 1 0.83931 0.90398 NaN 1 Median 0.83931 0.90398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7373100 3661800 3711300 7373100 3661800 3711300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33158 3214 34863 173542 175232 175232 1 TIIFVETK LIQLMEEIMAEKENKTIIFVETKRRCDDLT MAEKENKTIIFVETKRRCDDLTRRMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 2 0 1 0 1 0 0 2 0 0 1 0 0 8 0 949.54843 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 421 428 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 0.0051787 77.282 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 3 4 1.2296 1.0642 16.543 17 Median 1.3135 1.239 12.137 2 0 Median 1.296 1.1187 0.15781 2 0 Median 0.98334 0.9502 29.313 3 1 Median 1.2296 1.0642 8.2051 3 0 Median 0.96134 0.9748 1.4553 3 0 Plateau 1.2736 1.0414 13.277 4 0 Median 237460000 114370000 123080000 9195600 3831200 5364400 8775200 3844000 4931200 146350000 72112000 74238000 15099000 6723600 8374900 38214000 19011000 19202000 19823000 8849000 10974000 33159 343 34864 173543;173544;173545;173546;173547;173548;173549;173550;173551;173552;173553;173554;173555;173556;173557;173558;173559;173560 175233;175234;175235;175236;175237;175238;175239;175240;175241;175242;175243;175244;175245;175246;175247;175248;175249;175250 175235 18 TIIGDFQK KKSVEEGKIDGIIDKTIIGDFQKEQKKFVE IDGIIDKTIIGDFQKEQKKFVEEQHTKKSE K T I Q K E 0 0 0 1 0 1 0 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 8 0 920.49673 Q96A49 Q96A49 99 106 SYAP1 Synapse-associated protein 1 yes yes 2 0.01208 55.676 By MS/MS 1 1.2911 1.2276 NaN 1 Median 1.2911 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3787600 1541300 2246300 3787600 1541300 2246300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33160 3594 34865 173561 175251 175251 1 TIIIGHSSGAIAAMR IWLPFMETELHCDEKTIIIGHSSGAIAAMR TIIIGHSSGAIAAMRYAETHRVYAIVLVSA K T I M R Y 3 1 0 0 0 0 0 2 1 4 0 0 1 0 0 2 1 0 0 0 0 0 15 0 1496.8133 O75884 O75884 69 83 RBBP9 Putative hydrolase RBBP9 yes yes 3 0.0002083 46.3 By MS/MS By MS/MS 3 1 1.0589 0.98023 8.4635 4 Median 1.016 0.96258 10.32 3 0 Median 1.1969 0.99821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49014000 25738000 23276000 48206000 25377000 22830000 807790 361320 446460 0 0 0 0 0 0 0 0 0 0 0 0 33161 1702 34866 173562;173563;173564;173565 175252;175253 175253 1 TIIPLISQCTPK PARVNVPVIGGHAGKTIIPLISQCTPKVDF AGKTIIPLISQCTPKVDFPQDQLTALTGRI K T I P K V 0 0 0 0 1 1 0 0 0 3 1 1 0 0 2 1 2 0 0 0 0 0 12 0 1369.7639 P40926;G3XAL0 P40926 204 215 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.00067049 62.303 By MS/MS By MS/MS By MS/MS 1 1 1 0.8499 0.81508 13.791 3 Median 0.80537 0.74108 NaN 1 0 Median 1.1618 0.97252 NaN 1 0 Median 0.8499 0.81508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55365000 27536000 27828000 12829000 7693600 5135800 40229000 18717000 21512000 2305900 1125500 1180500 0 0 0 0 0 0 0 0 0 33162 2292 34867 173566;173567;173568 175254;175255;175256;175257;175258;175259 175255 6 TIIQNPTDQQK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE DGEKTIIQNPTDQQKKDHEKAEFEVHEVYA K T I Q K K 0 0 1 1 0 3 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 0 11 0 1284.6674 Q9UQ80;F8VR77 Q9UQ80 200 210 PA2G4 Proliferation-associated protein 2G4 yes no 2 0.00011287 146.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1 0.90998 0.84083 7.0959 10 Median 0.87108 0.81352 6.1057 2 0 Median 0.92131 0.78304 4.0572 2 0 Median 0.85195 0.86158 0.36799 2 0 Median 0.96585 0.83233 10.729 3 0 Median NaN NaN NaN 0 0 Median 1.0574 0.88723 NaN 1 0 Median 146970000 75674000 71299000 20024000 10327000 9696600 23158000 12012000 11146000 36867000 19144000 17723000 66123000 33754000 32369000 0 0 0 801230 436640 364590 33163 4360 34868 173569;173570;173571;173572;173573;173574;173575;173576;173577;173578 175260;175261;175262;175263;175264;175265;175266;175267;175268;175269;175270;175271;175272;175273;175274;175275;175276;175277;175278;175279;175280;175281;175282;175283;175284;175285 175271 26 TIIQNPTDQQKK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE GEKTIIQNPTDQQKKDHEKAEFEVHEVYAV K T I K K D 0 0 1 1 0 3 0 0 0 2 0 2 0 0 1 0 2 0 0 0 0 0 12 1 1412.7623 Q9UQ80;F8VR77 Q9UQ80 200 211 PA2G4 Proliferation-associated protein 2G4 yes no 2;3 0.0050577 48.948 By MS/MS By matching By MS/MS 2 1 2 0.84094 0.79874 13.968 5 Median 0.78821 0.75835 15.893 2 0 Median NaN NaN NaN 0 0 Median 0.93536 0.98882 NaN 1 0 Median 0.82004 0.77889 3.5592 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26605000 14737000 11868000 7374600 4482500 2892100 0 0 0 1307300 520010 787270 17923000 9734300 8188600 0 0 0 0 0 0 33164 4360 34869 173579;173580;173581;173582;173583 175286;175287;175288;175289;175290 175290 5 TIISLDTSQMNR TSVSYGLMCPADETRTIISLDTSQMNRILW ETRTIISLDTSQMNRILWVDENNLTAHVEA R T I N R I 0 1 1 1 0 1 0 0 0 2 1 0 1 0 0 2 2 0 0 0 0 0 12 0 1377.6922 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 254 265 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 1.3418E-21 196.88 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0297 1.0428 12.531 5 Median 1.2481 1.1794 NaN 1 0 Median 1.2938 1.1195 NaN 1 0 Median 1.0117 1.0248 2.4697 2 2 Median 1.0172 0.84995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71979000 32568000 39410000 21087000 9176900 11910000 9853900 4356000 5497800 38659000 17982000 20676000 2379500 1052900 1326600 0 0 0 0 0 0 33165 1439 34870 173584;173585;173586;173587;173588 175291;175292;175293;175294;175295;175296;175297 175292 7 TIISYIDEQFER TPGYGDAINCRDCFKTIISYIDEQFERYLH CFKTIISYIDEQFERYLHDESGLNRRHIID K T I E R Y 0 1 0 1 0 1 2 0 0 3 0 0 0 1 0 1 1 0 1 0 0 0 12 0 1512.746 Q15019;B5MCX3;C9J2Q4;C9JB25;H7C310;C9J938;C9IY94;C9IZU3;C9JQJ4 Q15019 117 128 SEPT2 Septin-2 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 4 3 1 5 1.2936 1.1791 27.084 15 Median 0.97378 0.98538 NaN 1 0 Median 1.1024 0.96167 NaN 1 0 Median 1.1318 1.1627 22.983 4 1 Median 1.2119 1.0347 5.8547 3 0 Median 1.2936 1.3774 NaN 1 0 Median 1.7496 1.5195 28.937 5 0 Median 212590000 100350000 112240000 1721000 824480 896550 11654000 5398100 6256300 186970000 89104000 97868000 6137200 2557500 3579800 1379500 617740 761810 4722100 1847900 2874200 33166 2914 34871 173589;173590;173591;173592;173593;173594;173595;173596;173597;173598;173599;173600;173601;173602;173603 175298;175299;175300;175301;175302;175303;175304;175305;175306;175307;175308;175309;175310;175311 175302 14 TIIVTTR TQINNKAATGEEVPRTIIVTTRSQYGLPED ATGEEVPRTIIVTTRSQYGLPEDAIVYCNF R T I T R S 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 3 0 0 1 0 0 7 0 802.49125 O15294 O15294 826 832 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.018478 62.717 By MS/MS By matching 1 1 1.0833 0.92396 NaN 1 Median NaN NaN NaN 0 0 Median 1.0833 0.92396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3460600 1494400 1966200 0 0 0 3218900 1332800 1886000 0 0 0 0 0 0 0 0 0 241730 161600 80132 33167 1537 34872 173604;173605 175312;175313 175313 2 TIIYLDR QPDQLFALLESAANKTIIYLDREKRVFTEA LLESAANKTIIYLDREKRVFTEANLVSVGS K T I D R E 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 7 0 892.50182 Q9NU22 Q9NU22 2634 2640 MDN1 Midasin yes yes 2 0.0054115 97.071 By matching By MS/MS By MS/MS 1 1 1 1.1809 1.0989 6.892 3 Median NaN NaN NaN 0 0 Median 1.1809 1.0044 NaN 1 0 Median 1.0906 1.1501 NaN 1 0 Median 1.2629 1.0989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15921000 7454800 8466400 0 0 0 3007800 1370000 1637800 11904000 5622300 6282100 1009000 462560 546440 0 0 0 0 0 0 33168 4112 34873 173606;173607;173608 175314;175315;175316;175317 175315 4 TIKEYAQNIWNVEPSDLK VLKNIAASGKFSSDRTIKEYAQNIWNVEPS EYAQNIWNVEPSDLKISLSNESNKVNGN__ R T I L K I 1 0 2 1 0 1 2 0 0 2 1 2 0 0 1 1 1 1 1 1 0 0 18 1 2147.0899 P06737 P06737 817 834 PYGL Glycogen phosphorylase, liver form yes yes 3 0.0041659 25.824 By MS/MS 1 0.80364 0.84633 NaN 1 Median 0.80364 0.84633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4388400 2276900 2111600 4388400 2276900 2111600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33169 1874 34874 173609 175318 175318 1 TILANGALR FAVMSRVNKVIIGTKTILANGALRAVTGTH VIIGTKTILANGALRAVTGTHTLALAAKHH K T I L R A 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 927.55016 P49770;H0YK01 P49770 238 246 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 2 0.0055515 57.281 By MS/MS By matching By MS/MS 1 1 1 1.0104 1.0174 24.737 3 Median 1.0104 1.0174 NaN 1 0 Median 0.7905 0.66926 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1669 1.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5249200 2149200 3100000 2115100 878210 1236800 1961800 764240 1197600 0 0 0 1172300 506700 665590 0 0 0 0 0 0 33170 2398 34875 173610;173611;173612 175319;175320;175321 175319 3 TILATGELGTLTNVYK EIRQFRKACGEAHLKTILATGELGTLTNVY ILATGELGTLTNVYKASMIAMMAGSDFIKT K T I Y K A 1 0 1 0 0 0 1 2 0 1 3 1 0 0 0 0 4 0 1 1 0 0 16 0 1692.9298 Q9Y315;G3V158;E9PML7;E9PMH9 Q9Y315 189 204 DERA Deoxyribose-phosphate aldolase yes no 2 7.8872E-07 93.959 By MS/MS By matching 1 1 1.0699 0.94289 8.3413 2 Median 0.96511 0.88888 NaN 1 0 Median 1.186 1.0002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14147000 7167700 6979200 12446000 6333700 6111900 1701400 834090 867310 0 0 0 0 0 0 0 0 0 0 0 0 33171 4402 34876 173613;173614 175322;175323 175323 2 TILEEEITPTIQK QKTIEKKEAKLKEIKTILEEEITPTIQKLK IKTILEEEITPTIQKLKEERSSYLEYQKVM K T I Q K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 0 3 0 0 0 0 0 13 0 1513.8239 O95347;Q5T821 O95347 197 209 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 7.6331E-07 126.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 3 0.91307 0.8786 17.042 9 Median 0.9124 0.8786 NaN 1 0 Median 0.89578 0.77048 NaN 1 0 Median 0.87845 0.93507 NaN 1 0 Median 1.1442 1.0038 24.252 2 0 Median 1.006 1.0554 NaN 1 0 Median 0.91307 0.76132 14.083 3 0 Median 71800000 36762000 35037000 24038000 12506000 11533000 4034500 2044500 1990000 31355000 15992000 15363000 6671100 3321500 3349600 4423800 2325400 2098400 1276600 573080 703480 33172 1766 34877 173615;173616;173617;173618;173619;173620;173621;173622;173623;173624 175324;175325;175326;175327;175328;175329;175330;175331 175327 8 TILESNDVPGMLAYSLK IGIALETRRLDVFEKTILESNDVPGMLAYS LESNDVPGMLAYSLKLCMSLMQNKQFRNKV K T I L K L 1 0 1 1 0 0 1 1 0 1 3 1 1 0 1 2 1 0 1 1 0 0 17 0 1849.9496 A0A087WW66;Q99460;H7BZR6;C9J9M4 A0A087WW66 166 182 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.00025729 46.592 By MS/MS By MS/MS 2 1 1.0238 0.91375 22.307 3 Median 1.1498 1.1013 26.405 2 0 Median 1.0238 0.89144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11381000 5402000 5978600 8456400 3983100 4473300 2924100 1418900 1505300 0 0 0 0 0 0 0 0 0 0 0 0 33173 54 34878 173625;173626;173627 175332;175333;175334 175333 3 TILETSFHQHR VQELTAENEKLVDEKTILETSFHQHRERAE VDEKTILETSFHQHRERAEQLSQENEKLMN K T I H R E 0 1 0 0 0 1 1 0 2 1 1 0 0 1 0 1 2 0 0 0 0 0 11 0 1367.6946 Q5M775 Q5M775 420 430 SPECC1 Cytospin-B yes yes 3 0.002372 39.917 By MS/MS By MS/MS By MS/MS 1 1 1 0.89137 0.76296 25.275 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47283 0.51456 NaN 1 0 Median 0.89137 0.76296 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0057 0.82439 NaN 1 0 Median 3113200 1957500 1155700 0 0 0 0 0 0 1659500 1228700 430800 700570 360670 339900 0 0 0 753110 368110 385000 33174 3065 34879 173628;173629;173630 175335;175336;175337 175337 3 TILGPTENIK DYLHATAYQNTALGRTILGPTENIKSISRK TALGRTILGPTENIKSISRKDLVDYITTHY R T I I K S 0 0 1 0 0 0 1 1 0 2 1 1 0 0 1 0 2 0 0 0 0 0 10 0 1084.6128 O75439;G3V0E4;F8WAZ6 O75439 210 219 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.00036818 108.81 By MS/MS By MS/MS By MS/MS 3 3 1 1.0299 0.87869 20.344 7 Median 0.86162 0.79723 5.1194 3 0 Median 1.2782 1.0838 20.368 3 0 Median NaN NaN NaN 0 0 Median 1.2857 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71111000 33734000 37377000 26296000 13002000 13294000 17541000 7905000 9635800 0 0 0 27274000 12828000 14447000 0 0 0 0 0 0 33175 1673 34880 173631;173632;173633;173634;173635;173636;173637 175338;175339;175340;175341 175338 4 TILLNTK KFDVPGDENAEMDARTILLNTKRLIVDVIR ENAEMDARTILLNTKRLIVDVIRFQPGETL R T I T K R 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 7 0 801.496 P46940;H0YLE8 P46940 1383 1389 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.0033118 104.45 By MS/MS By MS/MS By matching 1 3 2 1.1711 1.0596 31.389 6 Median 1.131 1.0852 NaN 1 0 Median 1.2105 1.065 11.188 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86584 0.7369 50.655 2 0 Median 15543000 7314800 8227700 3093200 1285200 1808000 11647000 5633100 6013500 0 0 0 0 0 0 0 0 0 802780 396520 406260 33176 2350 34881 173638;173639;173640;173641;173642;173643 175342;175343;175344;175345;175346 175343 5 TILLNTKR KFDVPGDENAEMDARTILLNTKRLIVDVIR NAEMDARTILLNTKRLIVDVIRFQPGETLT R T I K R L 0 1 1 0 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 8 1 957.59712 P46940;H0YLE8 P46940 1383 1390 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.026321 47.849 By MS/MS 2 1.1801 1.1924 10.536 2 Median 1.1801 1.1924 10.536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2790700 1242800 1547900 2790700 1242800 1547900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33177 2350 34882 173644;173645 175347;175348 175347 2 TILMMGR TPGKKEDLYLKPIQRTILMMGRYVEPIEDV LYLKPIQRTILMMGRYVEPIEDVPCGNIVG R T I G R Y 0 1 0 0 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 0 0 0 7 0 820.42992 P13639 P13639 450 456 EEF2 Elongation factor 2 yes yes 2 0.011345 80.377 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 8 3 3 1 1 1.1377 1.0235 22.397 23 Median 1.2578 1.2087 11.393 7 0 Median 1.1194 0.96917 7.8723 8 0 Median 1.3357 1.4173 12.003 3 0 Median 0.9892 0.85239 17.074 3 0 Median 1.7572 1.8758 NaN 1 0 Median 1.0412 0.85778 NaN 1 0 Median 302280000 136640000 165640000 105690000 46113000 59574000 172700000 79977000 92727000 16439000 7000500 9438400 5595000 2780400 2814600 1419300 555420 863920 431560 212680 218880 33178 1992 34883;34884;34885 173646;173647;173648;173649;173650;173651;173652;173653;173654;173655;173656;173657;173658;173659;173660;173661;173662;173663;173664;173665;173666;173667;173668 175349;175350;175351;175352;175353;175354;175355;175356;175357;175358;175359;175360;175361;175362;175363;175364;175365;175366;175367;175368;175369;175370;175371 175356 778;779 23 TILNLENSNK QKLQLLEEKTDEDEKTILNLENSNKSLSGE DEDEKTILNLENSNKSLSGELREVKKDLSQ K T I N K S 0 0 3 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1144.6088 Q8IX12 Q8IX12 1068 1077 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 0.00033468 86.136 By MS/MS 1 1.0112 0.87724 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0112 0.87724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6235500 2932000 3303500 0 0 0 0 0 0 0 0 0 6235500 2932000 3303500 0 0 0 0 0 0 33179 3331 34886 173669 175372;175373 175373 2 TILPAAAQDVYYR QRQPDSGISSIRSFKTILPAAAQDVYYRDE FKTILPAAAQDVYYRDEIGNVSTSHLLILD K T I Y R D 3 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 0 0 13 0 1479.7722 P04843;B7Z4L4 P04843 282 294 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 1.885E-06 117.67 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.92869 0.90765 4.9125 4 Linear 0.87594 0.8351 NaN 1 1 Median 1.0289 0.8903 NaN 1 0 Median 0.88704 0.89848 NaN 1 0 Median 0.97229 0.81214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41148000 20150000 20998000 10110000 5116500 4993000 9499000 4178400 5320600 19405000 9752100 9653100 2133800 1102600 1031200 0 0 0 0 0 0 33180 1853 34887 173670;173671;173672;173673 175374;175375 175375 2 TILPMSR REYINECDSDYHEERTILPMSRAFRGKHLS DSDYHEERTILPMSRAFRGKHLSFVVRFPN R T I S R A 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 0 7 0 816.45276 Q93008 Q93008 873 879 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.016334 68.915 By matching By MS/MS 1 3 1.2091 1.0473 25.521 4 Median 1.3583 1.3475 NaN 1 0 Median 1.0762 0.8998 22.758 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14628000 6835200 7792800 2584500 1268600 1315900 12044000 5566600 6476900 0 0 0 0 0 0 0 0 0 0 0 0 33181 3573 34888 173674;173675;173676;173677 175376;175377 175376 2 TILQGSSEGTGLSALLPQPK KGDSDSEEDEPTKKKTILQGSSEGTGLSAL SSEGTGLSALLPQPKNLTVKETNRLLLPHA K T I P K N 1 0 0 0 0 2 1 3 0 1 4 1 0 0 2 3 2 0 0 0 0 0 20 0 1996.0841 Q92733 Q92733 169 188 PRCC Proline-rich protein PRCC yes yes 2 0.037402 20.953 By MS/MS 2 0.67867 0.7119 10.517 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67867 0.7119 10.517 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3215000 1882500 1332500 0 0 0 0 0 0 3215000 1882500 1332500 0 0 0 0 0 0 0 0 0 33182 3550 34889 173678;173679 175378 175378 1 TILQHLSEAWR ILDMMPEGIKQNKARTILQHLSEAWRCWKA NKARTILQHLSEAWRCWKANIPWKVPGLPT R T I W R C 1 1 0 0 0 1 1 0 1 1 2 0 0 0 0 1 1 1 0 0 0 0 11 0 1352.7201 Q6P2Q9;I3L0J9 Q6P2Q9 708 718 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2;3 0.00018232 109.66 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 3 1 1.1162 1.0204 41.783 11 Median 1.0144 0.99443 NaN 1 1 Median 1.1162 0.95876 68.121 3 0 Median 0.96899 1.0591 NaN 1 0 Median 1.2498 1.093 6.4338 2 0 Median 1.2122 1.2694 19.719 3 0 Median 0.92414 0.73824 NaN 1 0 Median 35847000 16789000 19058000 3224800 1594900 1629900 9282900 4636000 4646900 9718800 4654500 5064300 888710 348080 540630 8046500 3518800 4527700 4685700 2036700 2649000 33183 3157 34890 173680;173681;173682;173683;173684;173685;173686;173687;173688;173689;173690 175379;175380;175381;175382;175383;175384 175382 6 TILSELAPSLPSYHNLEWR KLLLQLYLDNRKEIRTILSELAPSLPSYHN ELAPSLPSYHNLEWRLDVQLASRSLRQQIK R T I W R L 1 1 1 0 0 0 2 0 1 1 4 0 0 0 2 3 1 1 1 0 0 0 19 0 2225.1481 Q86X83;F8WBW1 Q86X83 112 130 COMMD2 COMM domain-containing protein 2 yes no 3 0.0004621 32.926 By matching By MS/MS By matching 1 1 2 0.99833 0.89122 25.526 4 Median 0.88058 0.82496 NaN 1 0 Median 1.1318 0.9628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92645 0.74753 39.067 2 0 Median 2076500 1012000 1064500 454680 242410 212270 1252500 580190 672300 0 0 0 0 0 0 0 0 0 369380 189420 179960 33184 1094 34891 173691;173692;173693;173694 175385;175386 175386 2 TILSLMTR YSGAPSEQQTYDYAKTILSLMTREKHPDGK QTYDYAKTILSLMTREKHPDGKILIIGGSI K T I T R E 0 1 0 0 0 0 0 0 0 1 2 0 1 0 0 1 2 0 0 0 0 0 8 0 933.53174 P53396 P53396 322 329 ACLY ATP-citrate synthase yes yes 2 0.0035841 87.323 By MS/MS By matching 1 2 1.3286 1.248 7.4744 3 Median 1.323 1.2729 NaN 1 0 Median 1.3572 1.1762 8.375 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37324000 15655000 21668000 23851000 9586800 14264000 13473000 6068700 7404200 0 0 0 0 0 0 0 0 0 0 0 0 33185 2467 34892 173695;173696;173697 175387;175388 175388 2 TILSNQTVDIPENVDITLK ______________________________ NQTVDIPENVDITLKGRTVIVKGPRGTLRR K T I L K G 0 0 2 2 0 1 1 0 0 3 2 1 0 0 1 1 3 0 0 2 0 0 19 0 2112.1314 D6RAN4;P32969;E7ESE0 D6RAN4 3 21 RPL9 60S ribosomal protein L9 yes no 2;3 1.0311E-09 92.935 By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 0.90842 0.81362 50.199 8 Median 0.75381 0.71209 19.776 2 0 Median 0.95288 0.80087 1.3093 2 0 Median 1.0336 0.94098 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86912 0.9549 1.9537 2 0 Median 0.22204 0.21375 NaN 1 0 Median 31842000 16465000 15376000 10169000 5290000 4879400 16226000 8164700 8061800 292580 139590 152980 0 0 0 3695000 1531900 2163100 1458100 1338900 119180 33186 812 34893 173698;173699;173700;173701;173702;173703;173704;173705 175389;175390;175391;175392;175393 175391 5 TILTLTGVSTLGDVK RLDTDILLGATCGLKTILTLTGVSTLGDVK TILTLTGVSTLGDVKNNQESDCVSKKKMVP K T I V K N 0 0 0 1 0 0 0 2 0 1 3 1 0 0 0 1 4 0 0 2 0 0 15 0 1516.8712 A6NDG6;H3BV17 A6NDG6 276 290 PGP Phosphoglycolate phosphatase yes no 2 2.6359E-06 91.937 By MS/MS By MS/MS By matching 1 1 1 1.143 0.96124 2.9779 3 Median 1.101 1.0112 NaN 1 0 Median 1.143 0.95947 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1572 0.96124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29923000 14006000 15917000 13658000 6473500 7184600 16191000 7502900 8687900 0 0 0 74246 29368 44878 0 0 0 0 0 0 33187 506 34894 173706;173707;173708 175394;175395;175396 175396 3 TIMEEQLVLKR CFGRTVETLLLRFGKTIMEEQLVLKRVANI RFGKTIMEEQLVLKRVANILINLYGMTAVL K T I K R V 0 1 0 0 0 1 2 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 11 1 1358.7592 Q9H845;H0Y8Z9 Q9H845 522 532 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 3 0.00072786 72.434 By MS/MS 2 1.2475 1.2564 1.7087 2 Median 1.2475 1.2564 1.7087 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13990000 6374000 7616000 13990000 6374000 7616000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33188 3988 34895;34896 173709;173710 175397;175398 175397 1861 1 TIMEQFNPSLR SRSEEMHRLTENVYKTIMEQFNPSLRNFIA NVYKTIMEQFNPSLRNFIAMGKNYEKALAG K T I L R N 0 1 1 0 0 1 1 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 11 0 1334.6653 Q9UQB8;I3L3C5 Q9UQB8 19 29 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes no 2 0.00014501 84.213 By MS/MS By MS/MS By matching 1 4 2 1.0848 0.9449 16.424 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99692 1.0113 NaN 1 0 Median 1.2475 1.0498 13.943 4 0 Median NaN NaN NaN 0 0 Median 0.94967 0.80567 1.213 2 0 Median 10693000 5274200 5418500 0 0 0 0 0 0 7841000 4076900 3764100 2056300 907550 1148800 0 0 0 795370 289750 505620 33189 4361 34897 173711;173712;173713;173714;173715;173716;173717 175399;175400;175401 175399 3 TIMHLMINNTK YVAIINKSIRDLMPKTIMHLMINNTKAFIH LMPKTIMHLMINNTKAFIHHELLAYLYSSA K T I T K A 0 0 2 0 0 0 0 0 1 2 1 1 2 0 0 0 2 0 0 0 0 0 11 0 1314.6788 P50570 P50570 678 688 DNM2 Dynamin-2 no no 2;3 5.2936E-05 109.42 By matching By MS/MS By matching By matching 1 2 1 1 0.9961 1.0384 24.805 5 Median NaN NaN NaN 0 0 Median 0.75589 0.67995 NaN 1 0 Median 0.97381 1.0638 3.4165 2 1 Median 1.604 1.3471 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2117 1.0009 NaN 1 0 Median 23664000 11458000 12205000 0 0 0 543300 299890 243420 20073000 9750600 10322000 1384900 608300 776610 0 0 0 1662900 799480 863380 33190 2417 34898 173718;173719;173720;173721;173722 175402;175403;175404 175403 3 TINEVENQILTR HIRVGWEQLLTTIARTINEVENQILTRDAK IARTINEVENQILTRDAKGISQEQMQEFRA R T I T R D 0 1 2 0 0 1 2 0 0 2 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1428.7573 O43707;F5GXS2;H7C144;P12814;H9KV75;H7C5W8;H0YJW3;H0YJ11 O43707 746 757 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2;3 4.3586E-32 156.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 1 1 1.2029 1.1456 19.387 8 Median 1.2975 1.2276 8.2434 4 2 Median 1.0457 0.91452 3.9718 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4194 1.4602 NaN 1 1 Median NaN NaN NaN 0 0 Median 262080000 118700000 143380000 190200000 84673000 105530000 63983000 30962000 33021000 0 0 0 0 0 0 7896100 3062900 4833200 0 0 0 33191 1585;1983 34899 173723;173724;173725;173726;173727;173728;173729;173730;173731;173732 175405;175406;175407;175408;175409;175410;175411;175412;175413;175414;175415;175416 175411 12 TINLYPLTNYTFGTK GNKYIQQTKPLTLERTINLYPLTNYTFGTK TINLYPLTNYTFGTKEPLYEKDSSVAARFQ R T I T K E 0 0 2 0 0 0 0 1 0 1 2 1 0 1 1 0 4 0 2 0 0 0 15 0 1744.9036 O43809 O43809 36 50 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 1.3134E-13 171.05 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1 3 1.0149 0.85242 6.7854 11 Median 0.84085 0.78326 NaN 1 0 Median 1.0743 0.91814 NaN 1 0 Median 0.85764 0.82063 0.91735 2 0 Median 1.1034 0.92149 5.2862 3 0 Linear 0.93995 0.95785 NaN 1 0 Median 1.0933 0.90485 6.127 3 0 Plateau 82959000 41681000 41278000 8241100 4182300 4058800 983150 485550 497610 35405000 18661000 16744000 15006000 6931800 8073900 11869000 5957000 5911800 11455000 5463200 5992200 33192 1592 34900 173733;173734;173735;173736;173737;173738;173739;173740;173741;173742;173743 175417;175418;175419;175420;175421;175422;175423;175424;175425;175426;175427;175428;175429;175430;175431;175432;175433;175434;175435;175436;175437;175438 175434 22 TINLYPLTNYTFGTKEPLYEK GNKYIQQTKPLTLERTINLYPLTNYTFGTK LTNYTFGTKEPLYEKDSSVAARFQRMREEF R T I E K D 0 0 2 0 0 0 2 1 0 1 3 2 0 1 2 0 4 0 3 0 0 0 21 1 2504.2839 O43809 O43809 36 56 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 3 0.067749 7.8971 By matching By MS/MS By matching 1 1 1 1.0357 0.93116 27.366 3 Median NaN NaN NaN 0 0 Median 1.0778 0.99255 NaN 1 0 Median 0.58868 0.60041 NaN 1 0 Median 1.0357 0.93116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1663800 797290 866490 0 0 0 200240 94070 106170 833410 378100 455300 630130 325110 305020 0 0 0 0 0 0 33193 1592 34901 173744;173745;173746 175439 175439 1 TINVEFAK QILQALHPPLTIDGKTINVEFAKGSKRDMA PLTIDGKTINVEFAKGSKRDMASNEGSRIS K T I A K G 1 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 8 0 920.49673 P98175 P98175 376 383 RBM10 RNA-binding protein 10 yes yes 2 0.0085925 62.464 By MS/MS By MS/MS 1 1 0.96233 0.9084 0.18515 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84499 0.90959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.096 0.90721 NaN 1 0 Median 7938100 4022100 3916000 0 0 0 0 0 0 6627300 3409000 3218300 0 0 0 0 0 0 1310800 613180 697660 33194 2671 34902 173747;173748 175440;175441 175440 2 TINVYPNFRPTPK GLIENPALLRWAYARTINVYPNFRPTPKNS ARTINVYPNFRPTPKNSLMGALCGFGPLIF R T I P K N 0 1 2 0 0 0 0 0 0 1 0 1 0 1 3 0 2 0 1 1 0 0 13 1 1545.8304 O95168 O95168 73 85 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes yes 2;3 0.00029915 73.067 By MS/MS By MS/MS By MS/MS 3 2 2 0.60899 0.59717 42.725 7 Median 0.60899 0.59717 56.823 3 0 Median 1.0918 0.9639 0.92656 2 0 Median 0.48138 0.50043 3.0581 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 147380000 81579000 65806000 78677000 47659000 31019000 54936000 24840000 30096000 13771000 9080000 4691300 0 0 0 0 0 0 0 0 0 33195 1751 34903 173749;173750;173751;173752;173753;173754;173755 175442;175443;175444;175445;175446;175447;175448;175449;175450;175451;175452;175453;175454 175443 13 TIPELSVRPSELEDGHTALNTHSVSPMEK KTFKYLPISHPRFVRTIPELSVRPSELEDG GHTALNTHSVSPMEKIKQYQAGQTVTCFLK R T I E K I 1 1 1 1 0 0 4 1 2 1 3 1 1 0 3 4 3 0 0 2 0 0 29 1 3173.5663 Q14690;A0A3B3IUD7 Q14690 1114 1142 PDCD11 Protein RRP5 homolog yes no 4;5 3.393E-05 29.859 By MS/MS 2 0.63908 0.76614 14.692 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63908 0.76614 14.692 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21048000 13322000 7726300 0 0 0 0 0 0 21048000 13322000 7726300 0 0 0 0 0 0 0 0 0 33196 448 34904 173756;173757 175455;175456;175457 175455 3 TIPGKQQLLIGAYAK AIEMELSKYLRDYSRTIPGKQQLLIGAYAK TIPGKQQLLIGAYAKALEIIPRQLCDNAGF R T I A K A 2 0 0 0 0 2 0 2 0 2 2 2 0 0 1 0 1 0 1 0 0 0 15 1 1599.9348 Q99832 Q99832 426 440 CCT7 T-complex protein 1 subunit eta yes yes 2;3 2.288E-05 83.862 By MS/MS 2 1.168 1.0973 4.3102 2 Median 1.168 1.0973 4.3102 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20280000 9118400 11162000 20280000 9118400 11162000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33197 3771 34905 173758;173759 175458;175459;175460;175461 175460 4 TIPIDGDFFSYTR CLRYYAGWADKYHGKTIPIDGDFFSYTRHE GKTIPIDGDFFSYTRHEPVGVCGQIIPWNF K T I T R H 0 1 0 2 0 0 0 1 0 2 0 0 0 2 1 1 2 0 1 0 0 0 13 0 1530.7355 P05091;F8VP50 P05091 160 172 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00054372 70.977 By MS/MS By matching 1 1 0.77599 0.73698 35.986 2 Median 0.98769 0.95053 NaN 1 0 Median 0.60966 0.57141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9510300 5187200 4323100 8890900 4745300 4145600 619350 441840 177510 0 0 0 0 0 0 0 0 0 0 0 0 33198 1860 34906 173760;173761 175462;175463 175462 2 TIPLTDNTVIEEHLGK RELILKRGQAKVKNKTIPLTDNTVIEEHLG IPLTDNTVIEEHLGKFGVICLEDLIHEIAF K T I G K F 0 0 1 1 0 0 2 1 1 2 2 1 0 0 1 0 3 0 0 1 0 0 16 0 1778.9414 Q6DKI1 Q6DKI1 173 188 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2;3 3.5654E-05 73.848 By MS/MS By MS/MS 3 3 0.90833 0.87407 6.2505 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83917 0.86102 3.7576 3 0 Median 1.0782 0.90641 8.7733 3 0 Median 46023000 23277000 22746000 0 0 0 0 0 0 0 0 0 0 0 0 36744000 18824000 17920000 9278900 4453200 4825600 33199 3132 34907 173762;173763;173764;173765;173766;173767 175464;175465;175466;175467;175468 175465 5 TIPNDPGFVVTLSNR FRDLYHRVDVIFCDKTIPNDPGFVVTLSNR TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN K T I N R M 0 1 2 1 0 0 0 1 0 1 1 0 0 1 2 1 2 0 0 2 0 0 15 0 1628.8522 Q93009;H3BND8 Q93009 802 816 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 1.7994E-06 93.959 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.85616 0.76095 50.814 5 Median 1.073 1.0669 94.759 2 0 Median 0.85616 0.75105 NaN 1 0 Median 0.70859 0.77928 NaN 1 0 Median 0.88611 0.76095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13827000 7636600 6190100 5159200 2874100 2285200 389950 206770 183180 7692100 4257400 3434700 585420 298350 287070 0 0 0 0 0 0 33200 3574 34908 173768;173769;173770;173771;173772 175469;175470;175471;175472;175473;175474 175471 6 TIPNVIISHR HALYQLLAHPNFTEKTIPNVIISHRYKAQD NFTEKTIPNVIISHRYKAQDTPARKTFEQA K T I H R Y 0 1 1 0 0 0 0 0 1 3 0 0 0 0 1 1 1 0 0 1 0 0 10 0 1148.6666 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 996 1005 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00070879 107.57 By MS/MS By MS/MS By matching 1 1 1 0.91443 0.94059 10.912 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89286 0.94059 NaN 1 0 Median 0.91443 0.79614 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91942 0.766 NaN 1 0 Median 17243000 8943400 8299600 0 0 0 0 0 0 13530000 7089300 6440700 2000400 1006500 993910 0 0 0 1712500 847570 864980 33201 991 34909 173773;173774;173775 175475;175476;175477 175476 3 TIPSWATLSASQLAR DEKDQSKEKEKKVKKTIPSWATLSASQLAR TIPSWATLSASQLARAQKQTPMASSPRPKM K T I A R A 3 1 0 0 0 1 0 0 0 1 2 0 0 0 1 3 2 1 0 0 0 0 15 0 1600.8573 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 132 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2;3 2.7739E-08 129.82 By MS/MS By MS/MS By matching 3 5 1 0.72201 0.69248 23.123 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72201 0.7318 37.736 3 0 Plateau NaN NaN NaN 0 0 Median 0.72646 0.73101 9.0955 5 1 Median 0.8508 0.69248 NaN 1 0 Median 56390000 32722000 23668000 0 0 0 0 0 0 20483000 11683000 8799600 0 0 0 34756000 20463000 14293000 1151500 576350 575110 33202 3075 34910 173776;173777;173778;173779;173780;173781;173782;173783;173784 175478;175479;175480;175481;175482;175483;175484;175485;175486;175487;175488;175489;175490 175484 13 TIPVVFK ALCGCTVNVPTLDGRTIPVVFKDVIRPGMR NVPTLDGRTIPVVFKDVIRPGMRRKVPGEG R T I F K D 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 2 0 0 7 0 802.49528 P25685 P25685 280 286 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 0.025249 54.525 By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1.1415 0.98496 19.545 8 Median 1.017 0.94938 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98263 0.9911 12.199 2 0 Median 1.1339 0.9453 2.7301 2 0 Median NaN NaN NaN 0 0 Median 1.6356 1.3757 21.78 3 0 Median 17641000 8692200 8949200 4983600 2132300 2851300 0 0 0 8211500 4569400 3642100 2777200 1251700 1525400 0 0 0 1669100 738800 930320 33203 2134 34911 173785;173786;173787;173788;173789;173790;173791;173792 175491;175492;175493;175494 175492 4 TIPWLEDR DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ LLEWIRRTIPWLEDRVPQKTIQEMQQKLED R T I D R V 0 1 0 1 0 0 1 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 8 0 1028.5291 O43707;K7EJH8 O43707 312 319 ACTN4 Alpha-actinin-4 yes no 2 0.024653 43.246 By MS/MS By matching 1 1 0.93929 0.87994 19.563 2 Median 1.0193 1.0105 NaN 1 0 Median 0.86558 0.76626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3118400 1565600 1552800 1886000 891750 994200 1232400 673850 558570 0 0 0 0 0 0 0 0 0 0 0 0 33204 1585 34912 173793;173794 175495;175496 175495 2 TIPWLEDRVPQK DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ IRRTIPWLEDRVPQKTIQEMQQKLEDFRDY R T I Q K T 0 1 0 1 0 1 1 0 0 1 1 1 0 0 2 0 1 1 0 1 0 0 12 1 1480.8038 O43707;K7EJH8 O43707 312 323 ACTN4 Alpha-actinin-4 yes no 2;3 0.00020226 86.275 By MS/MS By matching By matching 3 4 1 0.7757 0.76198 15.291 8 Median 0.83412 0.87019 10.029 3 0 Median 0.72716 0.68839 9.9627 4 0 Median 0.589 0.66919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59112000 34729000 24383000 50727000 29911000 20815000 5138500 2894000 2244500 3247100 1923900 1323200 0 0 0 0 0 0 0 0 0 33205 1585 34913 173795;173796;173797;173798;173799;173800;173801;173802 175497;175498;175499;175500 175498 4 TIQAHEGFVR GEVRIWNLTQRNCIRTIQAHEGFVRGICTR RNCIRTIQAHEGFVRGICTRFCGTSFFTVG R T I V R G 1 1 0 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 10 0 1156.5989 A0A087WT20;Q9NV06;B3KME9 A0A087WT20 256 265 DCAF13 DDB1- and CUL4-associated factor 13 yes no 2 0.0026873 75.378 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33206 13 34914 173803 175501 175501 1 TIQAPTQVPVVVSPR TMQDETLNSSVQSIRTIQAPTQVPVVVSPR TIQAPTQVPVVVSPRNQQLHTVTLQTVPLT R T I P R N 1 1 0 0 0 2 0 0 0 1 0 0 0 0 3 1 2 0 0 4 0 0 15 0 1590.9093 A0A0U1RRL5;P32519 A0A0U1RRL5 420 434 ELF1 ETS-related transcription factor Elf-1 yes no 2 0.0030342 37.426 By MS/MS 1 0.46784 0.50051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46784 0.50051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2399800 1543200 856630 0 0 0 0 0 0 2399800 1543200 856630 0 0 0 0 0 0 0 0 0 33207 310 34915 173804 175502 175502 1 TIQEMQQK IRRTIPWLEDRVPQKTIQEMQQKLEDFRDY EDRVPQKTIQEMQQKLEDFRDYRRVHKPPK K T I Q K L 0 0 0 0 0 3 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 8 0 1004.4961 O43707;K7EJH8 O43707 324 331 ACTN4 Alpha-actinin-4 yes no 2 0.0071131 68.422 By MS/MS 1 1.0468 0.92433 NaN 1 Median NaN NaN NaN 0 0 Median 1.0468 0.92433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2344000 1187000 1157000 0 0 0 2344000 1187000 1157000 0 0 0 0 0 0 0 0 0 0 0 0 33208 1585 34916 173805 175503;175504 175503 2 TIQFVDWCPTGFK PKDVNAAIATIKTKRTIQFVDWCPTGFKVG KRTIQFVDWCPTGFKVGINYQPPTVVPGGD R T I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 0 2 1 0 1 0 0 13 0 1597.7599 Q9BQE3;F5H5D3;A0A1W2PQM2;Q71U36;P0DPH8;P0DPH7;Q6PEY2;V9GZ17 Q71U36 340 352 TUBA1C;TUBA1A;TUBA3E;TUBA8 Tubulin alpha-1C chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2 0.00063696 68.786 By MS/MS By MS/MS By matching 2 2 1 0.68467 0.65208 48.272 5 Median 0.36938 0.35806 46.134 2 0 Median 0.96001 0.81842 9.0191 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68467 0.65208 NaN 1 0 Median NaN NaN NaN 0 0 Median 47907000 29679000 18227000 27340000 19168000 8172200 14323000 7190900 7132600 0 0 0 0 0 0 6242900 3320400 2922600 0 0 0 33209 3212;1034 34917 173806;173807;173808;173809;173810 175505;175506;175507;175508 175505 4 TIQGDEEDLR RLDQWLTTMLLRIKKTIQGDEEDLR_____ LRIKKTIQGDEEDLR_______________ K T I L R - 0 1 0 2 0 1 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1174.5466 M0R0Y2;P54920;M0R213 M0R0Y2 247 256 NAPA Alpha-soluble NSF attachment protein yes no 2 0.00039551 108.98 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3227 1.102 39.368 4 Median 1.1461 1.075 NaN 1 0 Median 1.3113 1.0913 NaN 1 0 Median 2.4299 2.4006 NaN 1 1 Median 1.3342 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20197000 8015600 12182000 6307400 2909600 3397800 6271800 2689400 3582400 3403300 849370 2553900 4214900 1567200 2647700 0 0 0 0 0 0 33210 1430 34918 173811;173812;173813;173814 175509;175510;175511;175512;175513;175514;175515 175514 7 TIQGHLQSENFK TKLCQIFSDLNATYRTIQGHLQSENFKQRV TYRTIQGHLQSENFKQRVMTCFRAWEDWAI R T I F K Q 0 0 1 0 0 2 1 1 1 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1400.7048 O15042;E7ET15 O15042 636 647 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2;3 1.2616E-14 184.36 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 6 5 1.1218 1.0448 15.898 16 Median 0.96542 0.94633 NaN 1 0 Median 1.2239 1.0699 22.063 3 2 Median 1.2062 1.2936 2.644 2 1 Median 1.199 1.0359 NaN 1 0 Median 1.0472 1.0674 4.9192 5 0 Median 1.0523 0.88823 12.435 4 1 Median 110850000 55021000 55830000 909250 483190 426060 9095600 4318600 4777000 18048000 8085600 9962500 4883500 2126300 2757200 60481000 31759000 28722000 17433000 8248000 9185100 33211 1515 34919 173815;173816;173817;173818;173819;173820;173821;173822;173823;173824;173825;173826;173827;173828;173829;173830;173831;173832 175516;175517;175518;175519;175520;175521;175522;175523;175524;175525;175526;175527;175528;175529;175530;175531;175532;175533;175534;175535;175536;175537 175526 22 TIQLYEMYFKDPQGR ELNVVVYHGSQASRRTIQLYEMYFKDPQGR TIQLYEMYFKDPQGRVIKGSYKFHAIITTF R T I G R V 0 1 0 1 0 2 1 1 0 1 1 1 1 1 1 0 1 0 2 0 0 0 15 1 1887.9189 Q9P2D1 Q9P2D1 1055 1069 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.031131 18.138 By MS/MS 1 0.76858 0.88847 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76858 0.88847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2466600 1369100 1097500 0 0 0 0 0 0 2466600 1369100 1097500 0 0 0 0 0 0 0 0 0 33212 4220 34920 173833 175538;175539 175538 2 TIQMGSFR VDELEWEIAQVDPKKTIQMGSFRINPDGSQ AQVDPKKTIQMGSFRINPDGSQSVVEVPYA K T I F R I 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 8 0 938.46439 F8W031;F8VXJ7;Q9Y2B0;F8VP03;H0YIH9;F8W1U5 F8W031 50 57 CNPY2 Protein canopy homolog 2 yes no 2 0.0035928 86.794 By MS/MS By MS/MS 2 1 1.1671 1.126 30.58 3 Median 0.93713 0.89219 32.914 2 0 Median 1.5169 1.2579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22978000 10474000 12504000 16527000 7912200 8615300 6450300 2561500 3888800 0 0 0 0 0 0 0 0 0 0 0 0 33213 1078 34921 173834;173835;173836 175540;175541 175540 2 TIQNLYDLDEDDDGIASVPTK NPPIGTVTPALKLTKTIQNLYDLDEDDDGI DLDEDDDGIASVPTKQMKFAASGGFLHHMA K T I T K Q 1 0 1 5 0 1 1 1 0 2 2 1 0 0 1 1 2 0 1 1 0 0 21 0 2321.0911 Q8WUT1;F8WEE2 Q8WUT1 148 168 POLDIP3 yes no 2 9.3252E-05 38.189 By MS/MS 1 0.68506 0.68004 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68506 0.68004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2928400 1544200 1384200 0 0 0 0 0 0 2928400 1544200 1384200 0 0 0 0 0 0 0 0 0 33214 3496 34922 173837 175542;175543 175542 2 TIQRPVTMGDEGGLRR FLKLKPFIDREWWHRTIQRPVTMGDEGGLR IQRPVTMGDEGGLRRLQSLIKNITLRRTKT R T I R R L 0 3 0 1 0 1 1 3 0 1 1 0 1 0 1 0 2 0 0 1 0 0 16 2 1784.9315 Q14527;A0A0C4DGA6;H7C5K0 Q14527 617 632 HLTF Helicase-like transcription factor yes no 4 0.0002455 41.967 By matching By MS/MS By MS/MS 1 1 1 0.95532 1.0901 16.236 3 Median 0.68987 0.85711 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95532 1.0901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.01 1.1677 NaN 1 0 Median NaN NaN NaN 0 0 Median 8803400 4364000 4439500 1162900 676550 486380 0 0 0 4487900 2179300 2308500 0 0 0 3152600 1508100 1644500 0 0 0 33215 238 34923 173838;173839;173840 175544;175545;175546 175544 3 TIQTIALITYLMEHKR NNLNGILADEMGLGKTIQTIALITYLMEHK IQTIALITYLMEHKRINGPFLIIVPLSTLS K T I K R I 1 1 0 0 0 1 1 0 1 3 2 1 1 0 0 0 3 0 1 0 0 0 16 1 1930.071 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3;A0A2R8YFV8;P51531;F6VDE0;A0A0U1RQZ9;A0A0U1RQE1 P51532 786 801 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 3;4 0.0052243 25.59 By MS/MS 2 1.0403 1.2429 14.565 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0403 1.2429 14.565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7584900 3749700 3835200 0 0 0 0 0 0 7584900 3749700 3835200 0 0 0 0 0 0 0 0 0 33216 366;2433 34924 173841;173842 175547;175548;175549;175550 175549 4 TIQTPIGSTWNTQR RVLPYPFTHHWQFERTIQTPIGSTWNTQRA RTIQTPIGSTWNTQRAFQKLTTPKVVTKPG R T I Q R A 0 1 1 0 0 2 0 1 0 2 0 0 0 0 1 1 4 1 0 0 0 0 14 0 1601.8162 Q9BVJ6;Q5TAP6 Q9BVJ6 698 711 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 9.7798E-06 90.653 By MS/MS By matching 2 1 0.9562 0.9893 12.07 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93166 0.94421 6.597 2 0 Median 0.9562 0.77863 NaN 1 0 Median 15660000 8067400 7592400 0 0 0 0 0 0 0 0 0 0 0 0 13991000 7190200 6800800 1668700 877130 791580 33217 3855 34925 173843;173844;173845 175551;175552 175552 2 TIQVDNTDAEGR KANKPGDVVRAKNGKTIQVDNTDAEGRLIL NGKTIQVDNTDAEGRLILADALCYAHTFNP K T I G R L 1 1 1 2 0 1 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 12 0 1317.6161 P28838 P28838 357 368 LAP3 Cytosol aminopeptidase yes yes 2 3.5722E-06 132.78 By MS/MS By MS/MS 1 1 1.0697 0.97162 1.6214 2 Median 0.98685 0.96055 NaN 1 0 Median 1.1596 0.98282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11384000 4899800 6484300 6258600 2999600 3259000 5125600 1900200 3225300 0 0 0 0 0 0 0 0 0 0 0 0 33218 2167 34926 173846;173847 175553;175554 175553 2 TIQVENSHLILTGAGALNK RAIGIGAYLVRLGQRTIQVENSHLILTGAG ENSHLILTGAGALNKVLGREVYTSNNQLGG R T I N K V 2 0 2 0 0 1 1 2 1 2 3 1 0 0 0 1 2 0 0 1 0 0 19 0 1978.0847 Q13085;Q59FY4 Q13085 1838 1856 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 1.0003E-06 52.045 By MS/MS By matching 2 1 1.1959 1.1982 29.54 3 Median 1.1151 1.0944 12.811 2 0 Median 2.0069 1.7811 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20590000 9516600 11073000 17908000 8627400 9280400 2682000 889170 1792900 0 0 0 0 0 0 0 0 0 0 0 0 33219 2784 34927 173848;173849;173850 175555;175556;175557 175556 3 TIQVSDFVR QVQIHTYFKPPSCPRTIQVSDFVRYHYNGT PPSCPRTIQVSDFVRYHYNGTFLDGTLFDS R T I V R Y 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 1 1 0 0 2 0 0 9 0 1063.5662 O95302 O95302 162 170 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9 yes yes 2 0.0030211 82.279 By MS/MS By MS/MS 2 1 0.96283 0.96598 20.517 2 Median 0.88137 0.83553 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0518 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16851000 8886900 7964400 13754000 7450900 6303300 0 0 0 3097100 1436000 1661100 0 0 0 0 0 0 0 0 0 33220 1763 34928 173851;173852;173853 175558;175559;175560 175560 3 TIRDIIALNPLYR QVTEEVKALTAEIVKTIRDIIALNPLYRES VKTIRDIIALNPLYRESVLQMMQAGQRVVD K T I Y R E 1 2 1 1 0 0 0 0 0 3 2 0 0 0 1 0 1 0 1 0 0 0 13 1 1556.9039 K7EKE6;P36776;K7EJE8 K7EKE6 185 197 LONP1 Lon protease homolog, mitochondrial yes no 3 0.010654 26.541 By MS/MS By matching 1 1 1.0107 1.1451 1.567 2 Median 1.0422 1.1579 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98012 1.1325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1947900 1013300 934640 1447800 777370 670410 0 0 0 500140 235920 264220 0 0 0 0 0 0 0 0 0 33221 1370 34929 173854;173855 175561;175562 175561 2 TIRPMDMETIEASVMK VLSKEGVECEVINMRTIRPMDMETIEASVM IRPMDMETIEASVMKTNHLVTVEGGWPQFG R T I M K T 1 1 0 1 0 0 2 0 0 2 0 1 3 0 1 1 2 0 0 1 0 0 16 1 1850.894 P11177;C9J634 P11177 270 285 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2;3 2.7593E-09 105.17 By MS/MS By matching 2 2 0.92627 0.88933 3.9628 4 Median 0.85985 0.85556 5.4572 2 0 Median 0.97892 0.89178 0.37183 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13175000 6842000 6332600 7529900 3906500 3623400 5644700 2935500 2709200 0 0 0 0 0 0 0 0 0 0 0 0 33222 1954 34930 173856;173857;173858;173859 175563;175564 175563 2 TIRYPDPLIK VGTKGIPHLVTHDARTIRYPDPLIKVNDTI THDARTIRYPDPLIKVNDTIQIDLETGKIT R T I I K V 0 1 0 1 0 0 0 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 10 1 1214.7023 P62701;Q8TD47 P62701 146 155 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2;3 0.00034729 102.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 2 0.96122 0.90712 15.857 12 Median 0.83438 0.84976 6.181 4 0 Median 0.97711 0.90585 0.6347 2 0 Median 1.0517 1.0955 1.0317 2 0 Median 1.2604 1.1157 33.783 2 0 Median 0.89999 0.95493 7.7031 2 0 Median NaN NaN NaN 0 0 Median 224190000 120310000 103880000 149440000 83180000 66258000 12395000 5986900 6407800 16423000 7957100 8466000 2664100 1064100 1600000 43268000 22124000 21144000 0 0 0 33223 2593 34931 173860;173861;173862;173863;173864;173865;173866;173867;173868;173869;173870;173871 175565;175566;175567;175568;175569;175570;175571;175572;175573;175574;175575;175576;175577;175578;175579;175580;175581;175582;175583;175584;175585;175586;175587;175588;175589;175590;175591;175592 175583 28 TISASTQVQGGDFNLYENMR GADADVVVWDPEATKTISASTQVQGGDFNL TQVQGGDFNLYENMRCHGVPLVTISRGRVV K T I M R C 1 1 2 1 0 2 1 2 0 1 1 0 1 1 0 2 2 0 1 1 0 0 20 0 2230.0324 Q9BPU6 Q9BPU6 412 431 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2 5.092E-05 39.424 By MS/MS 1 1.0347 1.0434 NaN 1 Median 1.0347 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2189900 1099000 1090900 2189900 1099000 1090900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33224 3776 34932 173872 175593 175593 1 TISETIER TVNIRTRDNKVHGERTISETIERLQQLKEF NKVHGERTISETIERLQQLKEFRSKQAEEE R T I E R L 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 1 2 0 0 0 0 0 8 0 947.49238 P26639 P26639 700 707 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0023862 136.11 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.2024 1.0678 17.58 10 Median 1.2067 1.1562 8.6384 2 0 Median 1.1254 0.94118 15.242 2 0 Median 1.244 1.2482 5.0735 3 0 Median 1.0656 0.88461 21.107 2 0 Median NaN NaN NaN 0 0 Median 1.3293 1.0345 NaN 1 0 Median 86892000 39455000 47436000 24921000 11638000 13284000 19836000 8952600 10883000 33949000 14995000 18954000 7884200 3727800 4156400 0 0 0 300800 141900 158900 33225 2147 34933 173873;173874;173875;173876;173877;173878;173879;173880;173881;173882 175594;175595;175596;175597;175598;175599;175600;175601;175602;175603;175604 175594 11 TISFREEQEK TEIEKARAVAERALKTISFREEQEKLNVWV ERALKTISFREEQEKLNVWVALLNLENMYG K T I E K L 0 1 0 0 0 1 3 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 1 1265.6252 Q14690;A0A3B3IUD7 Q14690 1648 1657 PDCD11 Protein RRP5 homolog yes no 3 0.020934 26.045 By MS/MS 1 0.97073 1.1552 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97073 1.1552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2186900 1072100 1114700 0 0 0 0 0 0 2186900 1072100 1114700 0 0 0 0 0 0 0 0 0 33226 448 34934 173883 175605 175605 1 TISHVIIGLK LTPCETENPMGGYGKTISHVIIGLKTAKGT GGYGKTISHVIIGLKTAKGTKQLKLDPSIF K T I L K T 0 0 0 0 0 0 0 1 1 3 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1079.6703 Q9Y265;E7ETR0 Q9Y265 153 162 RUVBL1 RuvB-like 1 yes no 2 0.00033827 114.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1 2 1.1466 1.0846 14.417 9 Median 1.0962 1.0146 NaN 1 0 Median 1.2748 1.0846 NaN 1 0 Median 1.0509 1.0256 2.2 2 0 Median 1.3956 1.2245 6.5495 2 0 Median 1.1466 1.0922 NaN 1 0 Median 1.3045 1.0694 34.802 2 0 Median 85520000 39414000 46106000 14112000 6472700 7639000 5285600 2395400 2890200 32841000 15969000 16872000 17878000 7397600 10481000 6478400 3178500 3299800 8925300 4000600 4924700 33227 4375 34935 173884;173885;173886;173887;173888;173889;173890;173891;173892 175606;175607;175608;175609;175610;175611;175612;175613;175614;175615;175616;175617;175618;175619 175616 13 TISLVIR EQVRSLSAIYLEKLKTISLVIRGTQGAEEV AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ K T I I R G 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 Q15149;H0YDN1 Q15149 1227 1233 PLEC Plectin yes no 2 0.0034092 104.11 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 3 2 2 1 2 1.5772 1.3218 12.791 11 Median 1.2365 1.211 NaN 1 0 Median 1.5772 1.2696 13.593 3 0 Median 1.1749 1.2511 1.5562 2 0 Median 1.6415 1.3973 7.8589 2 0 Median 1.6866 1.7712 NaN 1 0 Median 1.7229 1.4376 7.8968 2 0 Median 41822000 16800000 25022000 11782000 5048600 6732900 17316000 6476100 10840000 7165600 3158600 4007000 881200 344900 536300 2652300 1048500 1603800 2024800 722960 1301800 33228 2933 34936 173893;173894;173895;173896;173897;173898;173899;173900;173901;173902;173903 175620;175621;175622;175623;175624;175625;175626;175627 175621 8 TISPMVMDAK KFREAVKAASDELSKTISPMVMDAKAVAGN DELSKTISPMVMDAKAVAGNISDPGLQKSF K T I A K A 1 0 0 1 0 0 0 0 0 1 0 1 2 0 1 1 1 0 0 1 0 0 10 0 1091.5355 P18206 P18206 793 802 VCL Vinculin yes yes 2 0.0017405 62.823 By MS/MS By MS/MS By matching 1 2 1 0.92902 0.84227 10.529 4 Median 0.90453 0.86857 NaN 1 0 Median 0.94427 0.8119 0.84614 2 0 Median 0.93565 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56926000 29637000 27290000 36748000 19121000 17627000 15228000 8157500 7070600 4950300 2358400 2592000 0 0 0 0 0 0 0 0 0 33229 2057 34937 173904;173905;173906;173907 175628;175629;175630 175628 3 TISQHQISTSIITSTQK LLLLDLTWLEKLLPKTISQHQISTSIITST SQHQISTSIITSTQKGMIKLYFLSFFFPLI K T I Q K G 0 0 0 0 0 3 0 0 1 4 0 1 0 0 0 4 4 0 0 0 0 0 17 0 1871.9953 P03915 P03915 565 581 MT-ND5 NADH-ubiquinone oxidoreductase chain 5 yes yes 3 5.2215E-11 103.1 By MS/MS By MS/MS By MS/MS 2 2 1 0.96983 0.97275 27.352 5 Median 0.95234 0.93503 5.593 2 0 Median 1.7442 1.5452 3.1178 2 0 Median 0.8918 0.95372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56814000 25185000 31629000 22964000 11169000 11795000 23385000 8505900 14879000 10465000 5509700 4955400 0 0 0 0 0 0 0 0 0 33230 1840 34938 173908;173909;173910;173911;173912 175631;175632;175633;175634;175635 175633 5 TISQTSAPVWDESASFLIR PYATLTVGDSSHKTKTISQTSAPVWDESAS TSAPVWDESASFLIRKPHTESLELQVRGEG K T I I R K 2 1 0 1 0 1 1 0 0 2 1 0 0 1 1 4 2 1 0 1 0 0 19 0 2107.0586 Q9BSJ8 Q9BSJ8 836 854 ESYT1 Extended synaptotagmin-1 yes yes 2 7.5844E-06 50.563 By MS/MS By matching 1 1 0.65197 0.68408 42.781 2 Median 0.95322 0.92574 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.44593 0.50551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3810200 1919900 1890300 3391200 1644100 1747100 0 0 0 418990 275740 143250 0 0 0 0 0 0 0 0 0 33231 3816 34939 173913;173914 175636;175637 175637 2 TISSYTAFSR EPQMVLFNLYDDWLKTISSYTAFSRLILIL DDWLKTISSYTAFSRLILILRALHVNNDRA K T I S R L 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 3 2 0 1 0 0 0 10 0 1131.556 Q6P2Q9 Q6P2Q9 1926 1935 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00019452 129.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 2 1.103 1.0751 31.391 10 Median 0.92703 0.87797 29.921 2 0 Median 0.93582 0.80379 59.946 2 1 Median 0.98573 1.0746 NaN 1 0 Median 1.5844 1.3883 22.823 2 0 Median 1.0547 1.0757 NaN 1 0 Median 1.0755 0.90726 11.305 2 0 Median 125000000 58568000 66429000 18955000 9289800 9665300 6812400 3029600 3782800 53828000 26436000 27392000 10206000 4329100 5877000 22798000 10039000 12759000 12397000 5444300 6952300 33232 3157 34940 173915;173916;173917;173918;173919;173920;173921;173922;173923;173924;173925 175638;175639;175640;175641;175642;175643;175644;175645;175646;175647;175648;175649;175650 175640 13 TISTSDPAEVLVK TSKTRPKQEKAFSLKTISTSDPAEVLVKNS LKTISTSDPAEVLVKNSQPIKTLPPATSTE K T I V K N 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 2 2 0 0 2 0 0 13 0 1358.7293 Q86UE4;E5RJU9 Q86UE4 492 504 MTDH Protein LYRIC yes no 2 0.041874 42.21 By MS/MS 1 0.89159 0.92803 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89159 0.92803 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6274600 3295500 2979000 0 0 0 0 0 0 6274600 3295500 2979000 0 0 0 0 0 0 0 0 0 33233 3276 34941 173926 175651 175651 1 TISVQFNQLFLRPNK KVCACNTVRDILEGRTISVQFNQLFLRPNK TISVQFNQLFLRPNKEKIDFLLEVCSRSVN R T I N K E 0 1 2 0 0 2 0 0 0 1 2 1 0 2 1 1 1 0 0 1 0 0 15 1 1803.9996 Q75QN2;H0YBS1;J3KNV5 Q75QN2 398 412 INTS8 Integrator complex subunit 8 yes no 3 0.063531 11.474 By MS/MS 1 0.92806 1.0575 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92806 1.0575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1361000 682810 678170 0 0 0 0 0 0 1361000 682810 678170 0 0 0 0 0 0 0 0 0 33234 1170 34942 173927 175652 175652 1 TITELGEK VIRNVEAMNFADIERTITELGEKARKNELA NFADIERTITELGEKARKNELAIEDMDGGT R T I E K A 0 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 0 0 0 8 0 889.47566 P36957 P36957 346 353 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 0.021409 45.68 By MS/MS 1 0.95491 0.90973 NaN 1 Median 0.95491 0.90973 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3552200 1849300 1702900 3552200 1849300 1702900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33235 2265 34943 173928 175653;175654 175654 2 TITGFQTHTTPVLLAHGER VGQAVDVVGQAGKPKTITGFQTHTTPVLLA FQTHTTPVLLAHGERAELATEEFLPVTPIL K T I E R A 1 1 0 0 0 1 1 2 2 1 2 0 0 1 1 0 5 0 0 1 0 0 19 0 2078.0909 Q13200 Q13200 861 879 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2;3;4 7.3006E-72 239.19 By MS/MS By MS/MS By MS/MS By matching 4 2 2 2 1.009 0.93237 14.951 10 Median 0.95783 0.92345 5.8341 4 0 Median 1.0188 0.88092 4.5536 2 2 Median 1.0345 1.1053 1.3202 2 0 Median 0.94016 0.79981 27.916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 171000000 82692000 88305000 126030000 62159000 63868000 34598000 15711000 18887000 9293800 4234600 5059200 1077400 586820 490610 0 0 0 0 0 0 33236 2796 34944 173929;173930;173931;173932;173933;173934;173935;173936;173937;173938 175655;175656;175657;175658;175659;175660;175661;175662;175663;175664;175665;175666 175659 12 TITLEVEPSDTIENVK ______________________________ ITLEVEPSDTIENVKAKIQDKEGIPPDQQR K T I V K A 0 0 1 1 0 0 3 0 0 2 1 1 0 0 1 1 3 0 0 2 0 0 16 0 1786.92 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;F5GZ39;J3QSA3 P0CG48 12 27 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2;3 1.9819E-59 237.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 14 13 12 13 8 0.97592 0.99073 34.14 71 Plateau 0.98251 0.91587 19.533 11 1 Median 1.0471 0.89528 9.6631 14 1 Median 0.95251 0.9623 27.31 13 2 Median 0.76658 0.62629 31.913 12 0 Median 0.7446 0.78037 46.93 13 4 Median 1.1169 0.91333 38.23 8 0 Median 1948000000 952140000 995850000 424390000 204830000 219550000 181430000 84829000 96604000 231600000 114880000 116720000 58988000 27762000 31226000 872660000 438800000 433860000 178930000 81039000 97889000 33237 606 34945 173939;173940;173941;173942;173943;173944;173945;173946;173947;173948;173949;173950;173951;173952;173953;173954;173955;173956;173957;173958;173959;173960;173961;173962;173963;173964;173965;173966;173967;173968;173969;173970;173971;173972;173973;173974;173975;173976;173977;173978;173979;173980;173981;173982;173983;173984;173985;173986;173987;173988;173989;173990;173991;173992;173993;173994;173995;173996;173997;173998;173999;174000;174001;174002;174003;174004;174005;174006;174007;174008;174009 175667;175668;175669;175670;175671;175672;175673;175674;175675;175676;175677;175678;175679;175680;175681;175682;175683;175684;175685;175686;175687;175688;175689;175690;175691;175692;175693;175694;175695;175696;175697;175698;175699;175700;175701;175702;175703;175704;175705;175706;175707;175708;175709;175710;175711;175712;175713;175714;175715;175716;175717;175718;175719;175720;175721;175722;175723;175724;175725;175726;175727;175728;175729;175730;175731;175732;175733;175734;175735;175736;175737;175738;175739;175740;175741;175742;175743;175744;175745;175746;175747;175748;175749;175750;175751;175752;175753;175754;175755;175756;175757;175758;175759 175747 93 TITLEVEPSDTIENVKAK ______________________________ LEVEPSDTIENVKAKIQDKEGIPPDQQRLI K T I A K I 1 0 1 1 0 0 3 0 0 2 1 2 0 0 1 1 3 0 0 2 0 0 18 1 1986.0521 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;F5GZ39;J3QSA3 P0CG48 12 29 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 3 1.6067E-06 63.691 By MS/MS 2 0.56461 0.62503 7.3868 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56461 0.62503 7.3868 2 0 Median NaN NaN NaN 0 0 Median 9030700 5630900 3399800 0 0 0 0 0 0 0 0 0 0 0 0 9030700 5630900 3399800 0 0 0 33238 606 34946 174010;174011 175760;175761;175762 175761 3 TITMLDEQKEQLNR RILGLAIESQDAGIKTITMLDEQKEQLNRI KTITMLDEQKEQLNRIEEGLDQINKDMRET K T I N R I 0 1 1 1 0 2 2 0 0 1 2 1 1 0 0 0 2 0 0 0 0 0 14 1 1717.8669 H3BNE1;H3BR18;H3BM38;H3BPJ0;O00161;H3BR99 H3BNE1 41 54 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 yes no 3 6.7816E-05 77.527 By MS/MS By MS/MS By MS/MS 1 1 1 0.78715 0.78704 17.945 3 Median 0.7538 0.78704 NaN 1 0 Median 0.78715 0.73314 NaN 1 0 Median 0.99319 1.0302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22631000 12345000 10285000 14186000 8097900 6088400 3090800 1671500 1419200 5353600 2575800 2777800 0 0 0 0 0 0 0 0 0 33239 1209 34947 174012;174013;174014 175763;175764;175765;175766 175766 4 TITPAHFQLLR VPQVSQATGVQLPGKTITPAHFQLLRQQQQ LPGKTITPAHFQLLRQQQQQQQQQQQQQQQ K T I L R Q 1 1 0 0 0 1 0 0 1 1 2 0 0 1 1 0 2 0 0 0 0 0 11 0 1295.735 Q96L91 Q96L91 2745 2755 EP400 E1A-binding protein p400 yes yes 3 4.1196E-05 100.48 By MS/MS By matching 2 1 0.77395 0.8045 4.6179 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72506 0.78392 5.3583 2 0 Median 0.86381 0.74888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17647000 10017000 7630700 0 0 0 0 0 0 17548000 9969000 7579400 98998 47714 51284 0 0 0 0 0 0 33240 3700 34948 174015;174016;174017 175767;175768 175767 2 TITQIEEFSDVNEGEKEVMK VDSEDEKDPEWLREKTITQIEEFSDVNEGE EEFSDVNEGEKEVMKLWNLHVMKHGFIADN K T I M K L 0 0 1 1 0 1 5 1 0 2 0 2 1 1 0 1 2 0 0 2 0 0 20 1 2325.1046 J3QQW9;Q15022 J3QQW9 573 592 SUZ12 Polycomb protein SUZ12 yes no 3 0.00050842 30.094 By MS/MS By MS/MS 1 1 0.62855 0.71127 33.805 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79001 0.90333 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50008 0.56004 NaN 1 0 Median NaN NaN NaN 0 0 Median 7090900 4043200 3047700 0 0 0 0 0 0 4171900 2422300 1749600 0 0 0 2919000 1620900 1298100 0 0 0 33241 1344 34949 174018;174019 175769;175770;175771 175771 3 TITSSYYR IKLQIWDTAGQERFRTITSSYYRGAHGIIV AGQERFRTITSSYYRGAHGIIVVYDVTDQE R T I Y R G 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2 2 0 2 0 0 0 8 0 989.48181 Q9H0U4;E7END7;P62820 Q9H0U4 72 79 RAB1B;RAB1A Ras-related protein Rab-1B;Ras-related protein Rab-1A no no 2 0.0023142 132.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 1 2 1 1.2031 1.0482 35.838 11 Median 1.1846 1.12 40.137 4 0 Median 1.3304 1.1194 25.529 3 0 Plateau 1.2031 1.156 NaN 1 0 Median 1.0589 0.86009 3.0188 2 0 Median 2.0582 2.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median 105370000 47103000 58265000 69618000 30967000 38651000 22884000 10728000 12156000 10619000 4432600 6186300 1459400 703070 756300 788290 272620 515670 0 0 0 33242 3929;863 34950 174020;174021;174022;174023;174024;174025;174026;174027;174028;174029;174030 175772;175773;175774;175775;175776;175777;175778;175779 175773 8 TITSTYYR VKLQIWDTAGQERFRTITSTYYRGTHGVIV AGQERFRTITSTYYRGTHGVIVVYDVTSAE R T I Y R G 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 3 0 2 0 0 0 8 0 1003.4975 Q15286 Q15286 72 79 RAB35 Ras-related protein Rab-35 yes yes 2 0.0048619 79.116 By MS/MS By MS/MS 1 1 1.0454 0.93598 14.332 2 Median 1.0977 1.0358 NaN 1 0 Median 0.99562 0.84577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6320300 2834800 3485500 4580900 2096900 2484000 1739400 737870 1001500 0 0 0 0 0 0 0 0 0 0 0 0 33243 2938 34951 174031;174032 175780;175781;175782;175783 175780 4 TITTAYYR IKLQVWDTAGQERFKTITTAYYRGAMGIIL AGQERFKTITTAYYRGAMGIILVYDITDEK K T I Y R G 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 3 0 2 0 0 0 8 0 987.50255 P61006;H0YMN7;M0R257;Q96E17;H0YNE9;Q92930;P51153;O95716 P51153 72 79 RAB8A;RAB8B;RAB3A;RAB3C;RAB13;RAB3D Ras-related protein Rab-8A;Ras-related protein Rab-3C;Ras-related protein Rab-8B;Ras-related protein Rab-13;Ras-related protein Rab-3D no no 2 4.2983E-06 119.57 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1.3695 1.3015 20.287 6 Median 1.2313 1.1686 8.9284 2 2 Median 2.025 1.7127 NaN 1 1 Median 1.5231 1.575 20.657 2 0 Median 1.324 1.2054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51514000 24092000 27422000 30300000 15720000 14580000 10584000 3972200 6612100 9639100 4091400 5547800 990630 308450 682180 0 0 0 0 0 0 33244 2430;2535;1203;1787 34952 174033;174034;174035;174036;174037;174038 175784;175785;175786;175787;175788 175785 5 TITTLYVGGLGDTITETDLR KRASTMPRLDPPEDKTITTLYVGGLGDTIT YVGGLGDTITETDLRNHFYQFGEIRTITVV K T I L R N 0 1 0 2 0 0 1 3 0 2 3 0 0 0 0 0 6 0 1 1 0 0 20 0 2138.1107 Q9NW64 Q9NW64 230 249 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 3.9802E-15 90.412 By MS/MS By MS/MS By matching 1 1 1 1.0299 0.96707 6.7419 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90321 0.90643 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0299 1.0372 NaN 1 0 Median 1.1751 0.96707 NaN 1 0 Median 8006700 3941100 4065600 0 0 0 0 0 0 4603800 2303700 2300100 0 0 0 3134800 1533500 1601300 268140 103920 164220 33245 4146 34953 174039;174040;174041 175789;175790 175789 2 TITVALADGGRPDNTGR DGIDMAYRVLADHARTITVALADGGRPDNT TVALADGGRPDNTGRGYVLRRILRRAVRYA R T I G R G 2 2 1 2 0 0 0 3 0 1 1 0 0 0 1 0 3 0 0 1 0 0 17 1 1712.8806 P49588 P49588 304 320 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2;3 1.6021E-11 108.34 By MS/MS By MS/MS By MS/MS 4 3 1 0.98072 0.98865 10.702 8 Median 0.86487 0.94767 9.2143 4 1 Median 1.0892 1.0501 5.0586 3 0 Median NaN NaN NaN 0 0 Median 1.1471 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99956000 51646000 48310000 73311000 38881000 34430000 24706000 11826000 12880000 0 0 0 1938500 938700 999790 0 0 0 0 0 0 33246 2385 34954 174042;174043;174044;174045;174046;174047;174048;174049 175791;175792;175793;175794;175795;175796;175797;175798;175799;175800;175801;175802;175803;175804 175792 14 TITWGITSCK TDCRSLVKTLVCGVKTITWGITSCKAPGAQ VCGVKTITWGITSCKAPGAQFIPNKQLQPK K T I C K A 0 0 0 0 1 0 0 1 0 2 0 1 0 0 0 1 3 1 0 0 0 0 10 0 1165.5801 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 559 568 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0016291 63.816 By MS/MS By matching 1 1 2.0958 2.0876 13.398 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1427 2.2951 NaN 1 0 Median 2.0499 1.8989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8725200 2845600 5879600 0 0 0 0 0 0 8181300 2667500 5513800 543880 178060 365810 0 0 0 0 0 0 33247 991 34955 174050;174051 175805;175806 175805 2 TITYQAVPSEVPNEEPK QVSWQPFLDGIFPAKTITYQAVPSEVPNEE TYQAVPSEVPNEEPKVATAYRPPALRNKPI K T I P K V 1 0 1 0 0 1 3 0 0 1 0 1 0 0 3 1 2 0 1 2 0 0 17 0 1900.9418 Q9BY44;F8WAE5;H7C5R5 Q9BY44 425 441 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 1.1901E-07 96.059 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 0.62888 0.5811 15.177 6 Median 0.69366 0.67011 0.8233 2 0 Median 0.72302 0.62483 NaN 1 0 Median 0.48132 0.50343 10.031 2 0 Median 0.5916 0.50681 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30750000 18005000 12745000 21466000 11799000 9667500 1662000 910100 751850 6359800 4529200 1830600 1261800 767140 494690 0 0 0 0 0 0 33248 3886 34956 174052;174053;174054;174055;174056;174057 175807;175808;175809;175810;175811 175808 5 TIVEAASDEER RELPETDADLKRICKTIVEAASDEERLKAF RICKTIVEAASDEERLKAFAPIQEMMTFVQ K T I E R L 2 1 0 1 0 0 3 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 11 0 1218.5728 Q9NWY4 Q9NWY4 254 264 C4orf27 UPF0609 protein C4orf27 yes yes 2 0.00011206 123.88 By MS/MS By MS/MS By MS/MS 1 2 1 0.96449 0.92903 27.189 4 Median NaN NaN NaN 0 0 Median 1.0896 0.93248 NaN 1 0 Median 0.71761 0.72209 35.114 2 0 Median 1.2129 1.0306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15007000 7505300 7501600 0 0 0 1928200 832510 1095700 6533500 3461300 3072200 6545100 3211500 3333600 0 0 0 0 0 0 33249 4153 34957 174058;174059;174060;174061 175812;175813;175814;175815 175812 4 TIVEELLADSEFRR ADFYHSRIPKKQRKRTIVEELLADSEFRRY RTIVEELLADSEFRRYNRRKYSEIMAEKAA R T I R R Y 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 713 726 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 0.066349 8.3844 By MS/MS By matching 4 2 1.1719 1.1411 16.405 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0767 1.1613 19.454 4 0 Median 1.2717 1.1118 13.605 2 0 Median 6575900 2785300 3790600 0 0 0 0 0 0 0 0 0 0 0 0 4973400 2076900 2896500 1602500 708380 894140 33250 3067 34958 174062;174063;174064;174065;174066;174067 175816 175816 1 TIVEEVQDGK LTQYKKEPVTTRQVRTIVEEVQDGKVISSR TRQVRTIVEEVQDGKVISSREQVHQTTR__ R T I G K V 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 10 0 1116.5663 CON__Q04695;Q04695;F5GWP8;CON__Q6IFX2 CON__Q04695 410 419 KRT17 Keratin, type I cytoskeletal 17 no no 2 2.5136E-05 144.9 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1 5 0.91722 0.77733 36.738 13 Median 1.0985 1.0264 NaN 1 0 Median 0.91722 0.77733 16.422 3 1 Median 1.4642 1.3997 NaN 1 0 Median 0.86683 0.77871 24.266 2 1 Median 1.7374 1.6614 NaN 1 0 Median 0.69398 0.5707 25.07 5 2 Median 258950000 132890000 126060000 8231500 3895300 4336100 15040000 7719600 7320900 48641000 19466000 29175000 116390000 68772000 47616000 35547000 13229000 22319000 35100000 19811000 15290000 + 33251 768;787 34959 174068;174069;174070;174071;174072;174073;174074;174075;174076;174077;174078;174079;174080 175817;175818;175819;175820;175821;175822;175823;175824;175825;175826;175827;175828;175829;175830;175831;175832 175822 16 TIVEEVQDGKVISSR LTQYKKEPVTTRQVRTIVEEVQDGKVISSR TIVEEVQDGKVISSREQVHQTTR_______ R T I S R E 0 1 0 1 0 1 2 1 0 2 0 1 0 0 0 2 1 0 0 3 0 0 15 1 1658.8839 CON__Q04695;Q04695;F5GWP8 CON__Q04695 410 424 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 3.3955E-07 148.18 By MS/MS By MS/MS By MS/MS 1 2 3 1.1033 1.0277 49.508 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.418 1.3597 NaN 1 0 Median 1.6897 1.7303 10.63 2 0 Median 0.73273 0.65461 14.018 3 0 Median 59561000 29157000 30404000 0 0 0 0 0 0 0 0 0 4761300 1948500 2812900 21672000 7917300 13755000 33128000 19292000 13836000 + 33252 768 34960 174081;174082;174083;174084;174085;174086 175833;175834;175835;175836;175837 175833 5 TIVEMENSGLVHMLK IVKVVERELISKHMKTIVEMENSGLVHMLK TIVEMENSGLVHMLKNGKTEDLGCMYKLFS K T I L K N 0 0 1 0 0 0 2 1 1 1 2 1 2 0 0 1 1 0 0 2 0 0 15 0 1699.8637 Q13618 Q13618 275 289 CUL3 Cullin-3 yes yes 3 0.058391 10.634 By matching By MS/MS 1 1 1.098 1.127 28.185 2 Median 0.94702 0.92334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.273 1.3755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5317900 2659700 2658200 2806700 1494100 1312600 0 0 0 2511200 1165600 1345600 0 0 0 0 0 0 0 0 0 33253 2831 34961 174087;174088 175838;175839 175838 2 TIVFVETK LIRLMEEIMSEKENKTIVFVETKRRCDELT MSEKENKTIVFVETKRRCDELTRKMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 2 0 0 8 0 935.53278 J3KTA4;P17844;J3QSF1 J3KTA4 344 351 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0076735 66.073 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 2 3 4 1.3333 1.1764 11.509 15 Median 1.4693 1.3762 NaN 1 0 Median 1.1639 0.98924 8.071 2 0 Median 1.2544 1.2637 14.536 3 0 Median 1.3817 1.1799 4.3133 2 0 Median 1.2069 1.2339 6.1731 3 0 Median 1.4184 1.1618 6.8275 4 0 Median 216500000 97346000 119160000 14969000 5546600 9422000 19202000 8372500 10830000 104550000 48545000 56009000 8266500 3637400 4629100 42290000 19571000 22719000 27220000 11674000 15546000 33254 1334 34962 174089;174090;174091;174092;174093;174094;174095;174096;174097;174098;174099;174100;174101;174102;174103 175840;175841;175842;175843;175844;175845;175846;175847;175848;175849;175850;175851;175852;175853;175854;175855 175842 16 TIVFVETKR LIRLMEEIMSEKENKTIVFVETKRRCDELT SEKENKTIVFVETKRRCDELTRKMRRDGWP K T I K R R 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 2 0 0 9 1 1091.6339 J3KTA4;P17844;J3QSF1 J3KTA4 344 352 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.0012886 91.318 By matching By MS/MS 1 1 0.94599 0.95832 61.427 2 Median 0.64174 0.62069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3945 1.4796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6225700 2456900 3768900 1796100 878550 917510 0 0 0 4429700 1578300 2851300 0 0 0 0 0 0 0 0 0 33255 1334 34963 174104;174105 175856 175856 1 TIVHESERLEALK KFIEAAQRYNELSYKTIVHESERLEALKHA YKTIVHESERLEALKHALHCTILASAGQQR K T I L K H 1 1 0 0 0 0 3 0 1 1 2 1 0 0 0 1 1 0 0 1 0 0 13 1 1523.8308 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 215 227 COPS4 COP9 signalosome complex subunit 4 yes no 3 0.0019073 38.366 By MS/MS 1 1.1309 1.2117 NaN 1 Median 1.1309 1.2117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6771400 3117700 3653700 6771400 3117700 3653700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33256 813 34964 174106 175857;175858 175857 2 TIVHYSPNLVFSGIEAIQK SLTVKNTKDSAYNTRTIVHYSPNLVFSGIE YSPNLVFSGIEAIQKDSCESNHNITCKVGY R T I Q K D 1 0 1 0 0 1 1 1 1 3 1 1 0 1 1 2 1 0 1 2 0 0 19 0 2115.1364 P56199 P56199 857 875 ITGA1 Integrin alpha-1 yes yes 3 0.018902 24.893 By MS/MS 1 0.88584 0.83334 NaN 1 Median 0.88584 0.83334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1736100 735790 1000300 1736100 735790 1000300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33257 2509 34965 174107 175859 175859 1 TIVITSHPGQIVK ALCGFQKPISTLDNRTIVITSHPGQIVKHG NRTIVITSHPGQIVKHGDIKCVLNEGMPIY R T I V K H 0 0 0 0 0 1 0 1 1 3 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1391.8136 P31689 P31689 284 296 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2;3 7.5631E-10 170.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 3 2 2 5 1.022 0.92307 23.575 20 Median 1.1921 1.1142 35.636 4 0 Linear 0.91085 0.77266 6.4334 4 0 Median 1.157 1.1062 8.66 3 0 Plateau 1.0209 0.92307 1.7344 2 0 Median 1.2678 1.2099 6.4194 2 0 Median 1.0329 0.86631 21.809 5 0 Median 352030000 170470000 181550000 40260000 19211000 21049000 28503000 15513000 12990000 75805000 34759000 41046000 166650000 83899000 82749000 21565000 8774400 12790000 19248000 8317500 10930000 33258 2204 34966 174108;174109;174110;174111;174112;174113;174114;174115;174116;174117;174118;174119;174120;174121;174122;174123;174124;174125;174126;174127;174128 175860;175861;175862;175863;175864;175865;175866;175867;175868;175869;175870;175871;175872;175873;175874;175875;175876;175877;175878;175879;175880;175881;175882;175883;175884;175885;175886;175887;175888;175889;175890 175883 31 TIVMGASFR SVTKIYNYYKKFSYKTIVMGASFRNTGEIK KKFSYKTIVMGASFRNTGEIKALAGCDFLT K T I F R N 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 1 0 0 9 0 980.51134 P37837;F2Z393 P37837 231 239 TALDO1 Transaldolase yes no 2 0.0004206 130.27 By MS/MS By MS/MS By MS/MS By MS/MS 6 6 1 1 1.199 1.136 9.6271 14 Median 1.1523 1.136 3.6535 6 0 Median 1.3249 1.112 13.717 6 1 Median 1.1101 1.0809 NaN 1 0 Median 1.4154 1.2563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 346680000 154560000 192120000 248420000 111310000 137110000 83078000 35512000 47566000 14099000 7281000 6818000 1083300 464030 619240 0 0 0 0 0 0 33259 2270 34967;34968 174129;174130;174131;174132;174133;174134;174135;174136;174137;174138;174139;174140;174141;174142 175891;175892;175893;175894;175895;175896;175897;175898;175899;175900;175901;175902;175903;175904;175905;175906;175907;175908 175895 1020 18 TIVQLENEIYQIK SNWVSLVSKNYEIERTIVQLENEIYQIKQQ ERTIVQLENEIYQIKQQHGEANKENIRQDF R T I I K Q 0 0 1 0 0 2 2 0 0 3 1 1 0 0 0 0 1 0 1 1 0 0 13 0 1589.8665 O75934 O75934 198 210 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.00049996 72.006 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2158 1.1846 13.215 6 Median 1.2797 1.1887 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1008 1.0752 20.461 2 0 Median NaN NaN NaN 0 0 Median 1.2322 1.2378 6.6836 2 0 Median 1.2003 0.99227 NaN 1 0 Median 21801000 10218000 11583000 5574900 2787600 2787300 0 0 0 5222400 2524500 2697900 0 0 0 9146000 4046800 5099200 1857700 858760 998950 33260 1707 34969 174143;174144;174145;174146;174147;174148 175909;175910;175911;175912;175913 175910 5 TIVQLKPR IQSKSSVASLVGRSKTIVQLKPRSPDHVLK SLVGRSKTIVQLKPRSPDHVLKNTISVKAV K T I P R S 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 8 1 953.6022 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 849 856 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.031572 70.268 By MS/MS By MS/MS 1 1 0.89688 0.88273 11.582 2 Median 0.79898 0.81332 NaN 1 0 Median 1.0068 0.95807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4128800 2148600 1980100 1554300 915830 638450 2574500 1232800 1341700 0 0 0 0 0 0 0 0 0 0 0 0 33261 1220 34970 174149;174150 175914;175915 175914 2 TIVQSGGIK LSALIRHSKSKDVIKTIVQSGGIKHLVTMA SKDVIKTIVQSGGIKHLVTMATSEHVIMQN K T I I K H 0 0 0 0 0 1 0 2 0 2 0 1 0 0 0 1 1 0 0 1 0 0 9 0 901.52328 P52306 P52306 485 493 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 yes yes 2 0.011663 47.082 By matching By MS/MS 1 2 1.4528 1.3297 1.2482 3 Plateau 1.3541 1.3132 NaN 1 0 Median 1.4958 1.3132 1.7653 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2627400 1073900 1553400 781980 369900 412080 1845400 704030 1141300 0 0 0 0 0 0 0 0 0 0 0 0 33262 2451 34971 174151;174152;174153 175916 175916 1 TIVSIGDPK KKTKMTDEEIMEKLRTIVSIGDPKKKYTRY IMEKLRTIVSIGDPKKKYTRYEKIGQGASG R T I P K K 0 0 0 1 0 0 0 1 0 2 0 1 0 0 1 1 1 0 0 1 0 0 9 0 928.52295 Q13177 Q13177 238 246 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 2 0.0027865 69.598 By MS/MS By MS/MS By matching 1 1 1 0.95214 0.83251 14.045 3 Median 0.88134 0.83097 NaN 1 0 Median 0.98952 0.83251 NaN 1 0 Median 0.95214 1.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22010000 10961000 11049000 9905200 5273800 4631400 7643700 3491800 4151900 4461200 2195500 2265600 0 0 0 0 0 0 0 0 0 33263 2794 34972 174154;174155;174156 175917;175918;175919;175920 175918 4 TIVTDVFQGSMR NALHSALGGTKKKKKTIVTDVFQGSMRIFT KKKTIVTDVFQGSMRIFTKKLPHPDLPAEE K T I M R I 0 1 0 1 0 1 0 1 0 1 0 0 1 1 0 1 2 0 0 2 0 0 12 0 1352.6758 B9A018;Q53GS9;A0A087X1B2 B9A018 343 354 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes no 2 6.1328E-06 117.7 By MS/MS By MS/MS By MS/MS 1 4 1 1.2447 1.0744 23.656 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0227 1.027 NaN 1 0 Median 1.2894 1.0812 5.7641 4 2 Median 0.61663 0.62159 NaN 1 1 Median NaN NaN NaN 0 0 Median 20833000 10312000 10521000 0 0 0 0 0 0 10364000 5339600 5024800 7511600 3137700 4373900 2957400 1834900 1122500 0 0 0 33264 654 34973 174157;174158;174159;174160;174161;174162 175921;175922;175923;175924;175925 175921 5 TIVTNEYMKDDFFIK LVFHEKAWNAYPYCRTIVTNEYMKDDFFIK TIVTNEYMKDDFFIKIETWHKPDLGTLENV R T I I K I 0 0 1 2 0 0 1 0 0 2 0 2 1 2 0 0 2 0 1 1 0 0 15 1 1862.9124 P48739;B3KYB6;B3KYB7 P48739 96 110 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 3 0.063531 11.474 By MS/MS 1 1.2478 1.1239 NaN 1 Median NaN NaN NaN 0 0 Median 1.2478 1.1239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5437100 2312000 3125100 0 0 0 5437100 2312000 3125100 0 0 0 0 0 0 0 0 0 0 0 0 33265 2368 34974 174163 175926 175926 1 TIVYWGIGR LLEYLEKQRNRIGCRTIVYWGIGRNRYQLE NRIGCRTIVYWGIGRNRYQLEIPENFTTRN R T I G R N 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 1 1 1 1 0 0 9 0 1063.5815 P52701;A0A494C0M1;A0A087WWJ1 P52701 966 974 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.0025402 71.296 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 3 4 1 1.078 1.0874 13.544 11 Median 1.1821 1.1095 NaN 1 1 Median 0.91858 0.95729 22.754 2 0 Median 1.078 1.1854 12.225 3 0 Plateau 1.4355 1.2863 14.632 4 0 Linear NaN NaN NaN 0 0 Median 1.0764 0.91217 NaN 1 0 Median 29548000 12411000 17137000 12904000 4696700 8207500 1516500 738450 778020 13062000 6111600 6950100 1916800 800000 1116800 0 0 0 148850 64335 84518 33266 2453 34975 174164;174165;174166;174167;174168;174169;174170;174171;174172;174173;174174;174175 175927;175928;175929;175930;175931;175932 175930 6 TIYNLVDMER VKESLTEEDVLNCQKTIYNLVDMERKNDPL LNCQKTIYNLVDMERKNDPLPISTVGTRGK K T I E R K 0 1 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 0 1 1 0 0 10 0 1252.6122 Q9NVM9;H0YH12 Q9NVM9 497 506 ASUN Protein asunder homolog yes no 2 0.0085878 65.305 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33267 4136 34976 174176 175933 175933 1 TIYSSLQLQALNHR EIRFNGKGKKIRKPRTIYSSLQLQALNHRF RTIYSSLQLQALNHRFQQTQYLALPERAEL R T I H R F 1 1 1 0 0 2 0 0 1 1 3 0 0 0 0 2 1 0 1 0 0 0 14 0 1642.8791 G3V471;P56179 G3V471 44 57 DLX6 Homeobox protein DLX-6 yes no 3 0.0037721 31.526 By MS/MS 1 1.3074 1.4164 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3074 1.4164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3655600 1259200 2396300 0 0 0 0 0 0 3655600 1259200 2396300 0 0 0 0 0 0 0 0 0 33268 1113 34977 174177 175934 175934 1 TKADFFEDENGQR GGQSVTMGYYKNEAKTKADFFEDENGQRWL AKTKADFFEDENGQRWLCTGDIGEFEPDGC K T K Q R W 1 1 1 2 0 1 2 1 0 0 0 1 0 2 0 0 1 0 0 0 0 0 13 1 1555.6903 O95573 O95573 546 558 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 3 0.064053 13.413 By MS/MS By matching 1 1 1.1276 1.0666 8.358 2 Median 0.98829 1.0054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2866 1.1316 NaN 1 0 Median 3500500 1438800 2061700 1220400 486130 734310 0 0 0 0 0 0 0 0 0 0 0 0 2280100 952690 1327400 33269 1780 34978 174178;174179 175935 175935 1 TKAPDDLVAPVVK ______________________________ TKTKAPDDLVAPVVKKPHIYYGSLEEKERE K T K V K K 2 0 0 2 0 0 0 0 0 0 1 2 0 0 2 0 1 0 0 3 0 0 13 1 1351.7711 O43172 O43172 14 26 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 0.0061174 31.389 By MS/MS By matching 1 1 0.81747 0.83605 53.909 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54573 0.57106 NaN 1 0 Median 1.2245 1.224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8074600 5315000 2759600 0 0 0 0 0 0 6067800 4385600 1682200 2006800 929440 1077400 0 0 0 0 0 0 33270 1557 34979 174180;174181 175936 175936 1 TKAVENYLIQMAR ARARLSNLALVKPEKTKAVENYLIQMARYG EKTKAVENYLIQMARYGQLSEKVSEQGLIE K T K A R Y 2 1 1 0 0 1 1 0 0 1 1 1 1 0 0 0 1 0 1 1 0 0 13 1 1535.813 O14737;K7EQA1 O14737 67 79 PDCD5 Programmed cell death protein 5 yes no 2;3 0.00023374 88.596 By MS/MS By matching 2 1 1.2763 1.147 5.6469 3 Median 1.2222 1.1985 6.2026 2 0 Median 1.2763 1.1269 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14277000 7253200 7024100 13611000 6971400 6639400 666480 281790 384690 0 0 0 0 0 0 0 0 0 0 0 0 33271 1491 34980 174182;174183;174184 175937;175938;175939;175940 175940 4 TKDDIIEFAHR KLLKGDLAYNYRGPRTKDDIIEFAHRVSGA RGPRTKDDIIEFAHRVSGALIRPLPSQQMF R T K H R V 1 1 0 2 0 0 1 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 11 1 1343.6834 Q96JJ7 Q96JJ7 118 128 TMX3 Protein disulfide-isomerase TMX3 yes yes 3 0.00015966 68.44 By MS/MS By MS/MS 2 1 1.1519 1.0519 23.097 3 Median 1.0553 1.0599 32.658 2 0 Median 1.1519 1.0519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13326000 6910600 6415400 8999900 4573700 4426100 4326100 2336900 1989300 0 0 0 0 0 0 0 0 0 0 0 0 33272 3685 34981 174185;174186;174187 175941;175942;175943;175944 175941 4 TKDEYLINSQTTEHIVK RQRVWGVPIPVFHHKTKDEYLINSQTTEHI DEYLINSQTTEHIVKLVEQHGSDIWWTLPP K T K V K L 0 0 1 1 0 1 2 0 1 2 1 2 0 0 0 1 3 0 1 1 0 0 17 1 2018.032 Q9NSE4 Q9NSE4 539 555 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3;4 1.3676E-09 98.227 By MS/MS By matching 2 1 0.9707 1.0114 22.579 3 Median 0.92519 0.96699 6.3504 2 0 Median 1.5295 1.4186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47958000 23415000 24543000 38168000 19657000 18511000 9789100 3757400 6031700 0 0 0 0 0 0 0 0 0 0 0 0 33273 4103 34982 174188;174189;174190 175945;175946;175947;175948 175946 4 TKDGLEVAVLPHNIR AINIGQLVDVKVLEKTKDGLEVAVLPHNIR TKDGLEVAVLPHNIRAFLPTSHLSDHVANG K T K I R A 1 1 1 1 0 0 1 1 1 1 2 1 0 0 1 0 1 0 0 2 0 0 15 1 1660.9261 Q14690;A0A3B3IUD7 Q14690 647 661 PDCD11 Protein RRP5 homolog yes no 3;4 2.6572E-05 81.632 By MS/MS By MS/MS By matching 3 2 1 0.83089 0.96868 23.662 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91598 1.0981 8.4701 3 0 Median NaN NaN NaN 0 0 Median 0.78341 0.88724 14.144 2 0 Median 0.67353 0.59601 NaN 1 0 Median 40175000 21260000 18916000 0 0 0 0 0 0 33045000 17797000 15248000 0 0 0 6884600 3303700 3580800 246150 159130 87026 33274 448 34983 174191;174192;174193;174194;174195;174196 175949;175950;175951;175952;175953 175949 5 TKDGQILPVPNVVVR DCELVPRRVAIFIEKTKDGQILPVPNVVVR TKDGQILPVPNVVVRDVACGANHTLVLDSQ K T K V R D 0 1 1 1 0 1 0 1 0 1 1 1 0 0 2 0 1 0 0 4 0 0 15 1 1633.9515 Q9P258 Q9P258 319 333 RCC2 Protein RCC2 yes yes 2;3 0.00010567 78.096 By matching By matching By MS/MS By MS/MS 2 2 4 5 0.87412 0.85149 30.935 13 Median 0.85732 0.86343 26.067 2 0 Median 0.82294 0.76206 5.202 2 0 Median 0.82108 0.88563 47.656 4 0 Median 0.93893 0.85149 21.762 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 116910000 62789000 54124000 9468800 5415200 4053600 1083800 538520 545320 94490000 51503000 42987000 11871000 5332700 6538000 0 0 0 0 0 0 33275 4214 34984 174197;174198;174199;174200;174201;174202;174203;174204;174205;174206;174207;174208;174209 175954;175955;175956;175957;175958;175959;175960;175961 175957 8 TKDGVVEITGK SLDVNHFAPDELTVKTKDGVVEITGKHEER LTVKTKDGVVEITGKHEERQDEHGYISRCF K T K G K H 0 0 0 1 0 0 1 2 0 1 0 2 0 0 0 0 2 0 0 2 0 0 11 1 1145.6292 P04792 P04792 113 123 HSPB1 Heat shock protein beta-1 yes yes 2 0.019806 48.44 By MS/MS By matching 1 1 0.8314 0.85666 33.119 2 Median 1.0632 1.0827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65013 0.6778 NaN 1 0 Median NaN NaN NaN 0 0 Median 3445500 1588400 1857000 2849800 1279100 1570700 0 0 0 0 0 0 0 0 0 595680 309290 286390 0 0 0 33276 1851 34985 174210;174211 175962 175962 1 TKDGVVEITGKHEER SLDVNHFAPDELTVKTKDGVVEITGKHEER TKDGVVEITGKHEERQDEHGYISRCFTRKY K T K E R Q 0 1 0 1 0 0 3 2 1 1 0 2 0 0 0 0 2 0 0 2 0 0 15 2 1696.8744 P04792 P04792 113 127 HSPB1 Heat shock protein beta-1 yes yes 3;4 0.0035675 29.733 By MS/MS By matching By matching 2 1 1 1.2868 1.1157 39.523 4 Median NaN NaN NaN 0 0 Median 1.2868 1.1157 2.3061 2 0 Median 0.46055 0.51564 NaN 1 0 Median 1.4225 1.1733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2600100 1181900 1418200 0 0 0 2222600 969630 1252900 252790 150610 102170 124760 61644 63115 0 0 0 0 0 0 33277 1851 34986 174212;174213;174214;174215 175963;175964;175965 175964 3 TKDHTLVQTIAR QNLKFIDPFCKIAAKTKDHTLVQTIARGVF AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K T K A R G 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 3 0 0 1 0 0 12 1 1381.7678 Q14684 Q14684 203 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.00034917 57.175 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 4 1.3445 1.3128 14.877 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0771 1.2074 14.792 4 0 Median 1.2787 1.1703 12.684 4 0 Median 1.3445 1.4294 18.8 4 0 Median 1.5159 1.3665 5.1267 4 1 Median 29066000 13604000 15463000 0 0 0 0 0 0 13649000 6568000 7081400 5918600 2799000 3119500 6102600 2892500 3210200 3395700 1344000 2051700 33278 2890 34987 174216;174217;174218;174219;174220;174221;174222;174223;174224;174225;174226;174227;174228;174229;174230;174231 175966;175967;175968;175969;175970;175971;175972;175973;175974;175975 175967 10 TKDIEDVFYK NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG R T K Y K Y 0 0 0 2 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 1 0 0 10 1 1256.6289 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 29 38 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2;3 0.00048491 103.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 7 4 1.1444 1.1255 15.14 19 Median 1.515 1.4787 NaN 1 0 Median 1.3269 1.1945 8.2044 3 1 Median 1.0131 1.0538 1.1372 2 0 Median 1.2711 1.1161 1.188 2 0 Median 1.0426 1.1341 19.334 7 0 Median 1.1692 1.0012 12.756 4 0 Median 438070000 205240000 232830000 5052700 2100200 2952500 24642000 10091000 14552000 93027000 42831000 50196000 42691000 18879000 23812000 216520000 105880000 110640000 56138000 25458000 30680000 33279 1337 34988 174232;174233;174234;174235;174236;174237;174238;174239;174240;174241;174242;174243;174244;174245;174246;174247;174248;174249;174250 175976;175977;175978;175979;175980;175981;175982;175983;175984;175985;175986;175987;175988;175989;175990;175991;175992;175993;175994;175995;175996;175997 175978 22 TKDIVNGLR ENKIRSTLNEIYFGKTKDIVNGLRSVQTFA EIYFGKTKDIVNGLRSVQTFADKSKQEALK K T K L R S 0 1 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 1 1014.5822 B1AK87;B1AK88;P47756 B1AK87 224 232 CAPZB F-actin-capping protein subunit beta yes no 2 0.033317 52.716 By MS/MS By MS/MS 1 1 1.0672 1.0125 5.8653 2 Median 0.97882 0.97136 NaN 1 0 Median 1.1636 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4605900 2099000 2506900 2523400 1151000 1372300 2082600 947990 1134600 0 0 0 0 0 0 0 0 0 0 0 0 33280 566 34989 174251;174252 175998;175999 175999 2 TKDLIIEQR KRELLELASRMENERTKDLIIEQRFHRTII RMENERTKDLIIEQRFHRTIIGQKGERIRE R T K Q R F 0 1 0 1 0 1 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1114.6346 Q00341;A0A024R4E5;H0Y394;H7BZC3 Q00341 509 517 HDLBP Vigilin yes no 2 0.0033889 102.62 By MS/MS By MS/MS By matching 1 1 1 1.1901 1.218 4.8348 3 Median 1.1901 1.218 NaN 1 0 Median 1.306 1.2202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99141 1.1212 NaN 1 0 Median NaN NaN NaN 0 0 Median 11811000 5734800 6076700 1513000 661310 851700 6763300 3217000 3546300 0 0 0 0 0 0 3535200 1856500 1678700 0 0 0 33281 4 34990 174253;174254;174255 176000;176001;176002 176002 3 TKDLPVTEAVFSALVTGHAR VGDIEGASKILGFMKTKDLPVTEAVFSALV VTEAVFSALVTGHARAGDMENAENILTVMR K T K A R A 3 1 0 1 0 0 1 1 1 0 2 1 0 1 1 1 3 0 0 3 0 0 20 1 2111.1375 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 225 244 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 3 4.5353E-06 47.808 By MS/MS By MS/MS By MS/MS 1 1 1 1.1045 1.0865 8.9967 3 Median 1.0439 1.0865 NaN 1 0 Median 1.1438 1.0731 NaN 1 0 Median 1.1045 1.2614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11590000 5609900 5980000 5390300 2640900 2749400 4806800 2363900 2442900 1392800 605150 787670 0 0 0 0 0 0 0 0 0 33282 2315 34991 174256;174257;174258 176003;176004;176005;176006 176006 4 TKDQPDGSSLSPAQSPSQSQPPAASSLR KVPTTKSTLWQEEMRTKDQPDGSSLSPAQS QSPSQSQPPAASSLREPGLESKEEESAMSS R T K L R E 3 1 0 2 0 4 0 1 0 0 2 1 0 0 5 8 1 0 0 0 0 0 28 1 2823.3635 A0A494BZV2;Q6WCQ1;J3KSW8;A0A1W2PPU9 A0A494BZV2 210 237 MPRIP Myosin phosphatase Rho-interacting protein yes no 3 2.6559E-05 32.985 By MS/MS 1 0.45234 0.4347 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45234 0.4347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1929600 1299500 630100 0 0 0 0 0 0 0 0 0 1929600 1299500 630100 0 0 0 0 0 0 33283 453 34992 174259 176007 176007 1 TKDSGSISLQETR SSIDLNLSISSFLSKTKDSGSISLQETRRQ SKTKDSGSISLQETRRQKKTLKKTRKFIVD K T K T R R 0 1 0 1 0 1 1 1 0 1 1 1 0 0 0 3 2 0 0 0 0 0 13 1 1420.7158 Q9H2G2 Q9H2G2 774 786 SLK STE20-like serine/threonine-protein kinase yes yes 3 0.0057081 32.068 By MS/MS By matching 1 1 1.1638 1.0517 1.3625 2 Median 1.0176 1.0416 NaN 1 0 Median 1.331 1.0619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2378600 1010000 1368600 1284500 635910 648600 1094100 374080 720040 0 0 0 0 0 0 0 0 0 0 0 0 33284 3942 34993 174260;174261 176008 176008 1 TKDSLVLNNITR QNLKFIDPFCRIAARTKDSLVLNNITRGIF AARTKDSLVLNNITRGIFETIVEQAPLAIE R T K T R G 0 1 2 1 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 1 0 0 12 1 1372.7674 P56182 P56182 204 215 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 3 0.00018721 73.927 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 3 1 0.98744 1.0247 36.534 8 Median NaN NaN NaN 0 0 Median 0.81935 0.7485 NaN 1 0 Median 1.0379 1.102 11.214 2 0 Median 1.4873 1.3956 NaN 1 0 Median 0.70534 0.7812 46.901 3 0 Median 1.1407 1.0315 NaN 1 0 Median 34400000 17550000 16849000 0 0 0 996330 568030 428300 5802000 2664800 3137300 856460 340120 516340 22891000 12230000 10661000 3854300 1747700 2106700 33285 2507 34994 174262;174263;174264;174265;174266;174267;174268;174269 176009;176010;176011;176012;176013 176010 5 TKDVEILHLR AALEAKVKDLLTLAKTKDVEILHLRNELRD LTLAKTKDVEILHLRNELRDMRAQLGINED K T K L R N 0 1 0 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1222.7034 A0A494C1J1;Q69YQ0;F8WAN1;C9J8U1;C9JLY8 A0A494C1J1 213 222 SPECC1L;SPECC1L-ADORA2A Cytospin-A yes no 3 0.0034379 43.512 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.86801 0.91725 30.588 4 Median 0.98211 1.0149 NaN 1 0 Median 0.5425 0.52137 NaN 1 0 Median 0.76717 0.87208 NaN 1 0 Median 1.0039 0.96476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5806000 2986600 2819400 652020 354560 297460 586570 297650 288920 2670900 1389500 1281400 1896500 944920 951620 0 0 0 0 0 0 33286 469 34995 174270;174271;174272;174273 176014;176015;176016 176014 3 TKEAVLLLK ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN VEGYKKTKEAVLLLKKLKAWNDIKKVYASQ K T K L K K 1 0 0 0 0 0 1 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 9 1 1013.6485 P36578;H3BM89;H3BTP7 P36578 164 172 RPL4 60S ribosomal protein L4 yes no 2 0.0023859 119.62 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.1952 1.1598 5.7674 6 Median 1.3111 1.2508 NaN 1 0 Median 1.2058 1.1306 NaN 1 0 Median 1.1846 1.2451 NaN 1 0 Median 1.1709 1.1121 NaN 1 0 Median 1.1142 1.1898 NaN 1 0 Median 1.2296 1.0959 NaN 1 0 Median 70695000 31205000 39490000 14296000 6768000 7527900 7266000 3292900 3973100 3925500 1755300 2170200 13496000 5229500 8266900 20769000 9206000 11563000 10942000 4953400 5988900 33287 2260 34996 174274;174275;174276;174277;174278;174279 176017;176018;176019;176020;176021;176022;176023;176024 176022 8 TKEEALELINGYIQK QSRRPSSWRQEKITRTKEEALELINGYIQK TKEEALELINGYIQKIKSGEEDFESLASQF R T K Q K I 1 0 1 0 0 1 3 1 0 2 2 2 0 0 0 0 1 0 1 0 0 0 15 1 1747.9356 Q13526;K7EMU7;K7EN45 Q13526 81 95 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 2 1.0654E-05 92.866 By MS/MS By matching By MS/MS 1 1 2 0.9545 0.90474 19.197 4 Median 0.69951 0.70103 NaN 1 0 Median 1.068 0.94746 NaN 1 0 Median 0.96822 0.97934 17.731 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20630000 10666000 9963700 4185200 2499700 1685400 297340 146290 151060 16147000 8020000 8127200 0 0 0 0 0 0 0 0 0 33288 2822 34997 174280;174281;174282;174283 176025;176026;176027 176027 3 TKEEVNEWFTK SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM FTNRTKEEVNEWFTKYTEMDYARAGNKAAF R T K T K Y 0 0 1 0 0 0 3 0 0 0 0 2 0 1 0 0 2 1 0 1 0 0 11 1 1409.6827 Q9UKD2 Q9UKD2 108 118 MRTO4 mRNA turnover protein 4 homolog yes yes 2;3 1.5213E-06 118.28 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.2349 1.1551 14.494 8 Median 1.3781 1.4012 18.438 2 0 Median NaN NaN NaN 0 0 Median 1.2866 1.2822 5.0523 2 1 Median NaN NaN NaN 0 0 Median 0.99718 1.0635 2.4056 2 0 Median 1.2397 1.0759 1.1779 2 0 Median 64973000 28338000 36635000 20009000 8718000 11291000 0 0 0 18615000 7613000 11002000 0 0 0 12502000 6089400 6412600 13847000 5918000 7929000 33289 4308 34998 174284;174285;174286;174287;174288;174289;174290;174291;174292 176028;176029;176030;176031;176032;176033;176034;176035;176036;176037;176038 176032 11 TKEGVLYVGSK AAEKTKQGVAEAAGKTKEGVLYVGSKTKEG AAGKTKEGVLYVGSKTKEGVVHGVATVAEK K T K S K T 0 0 0 0 0 0 1 2 0 0 1 2 0 0 0 1 1 0 1 2 0 0 11 1 1179.6499 P37840;E7EPV7;D6RA31;Q16143 P37840 33 43 SNCA;SNCB Alpha-synuclein;Beta-synuclein yes no 2 3.8012E-18 158.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 4 6 5 0.28862 0.25514 231.59 31 Median 0.60528 0.58149 93.84 6 0 Median 0.28862 0.25514 122.85 5 0 Median 0.22328 0.22288 249.36 5 1 Median 0.085288 0.073707 345.49 4 1 Median 0.058431 0.064822 305.95 6 4 Median 0.090915 0.08113 267.45 5 3 Median 2008300000 1893900000 114490000 115490000 63718000 51769000 100190000 89041000 11147000 99908000 93128000 6779500 393570000 385670000 7903000 586870000 563790000 23077000 712320000 698510000 13809000 33290 2271 34999 174293;174294;174295;174296;174297;174298;174299;174300;174301;174302;174303;174304;174305;174306;174307;174308;174309;174310;174311;174312;174313;174314;174315;174316;174317;174318;174319;174320;174321;174322;174323 176039;176040;176041;176042;176043;176044;176045;176046;176047;176048;176049;176050;176051;176052;176053;176054;176055;176056;176057;176058;176059;176060;176061;176062;176063;176064;176065;176066;176067;176068;176069;176070;176071;176072;176073;176074;176075;176076;176077;176078;176079 176077 41 TKEGVVHGVATVAEK AAGKTKEGVLYVGSKTKEGVVHGVATVAEK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG K T K E K T 2 0 0 0 0 0 2 2 1 0 0 2 0 0 0 0 2 0 0 4 0 0 15 1 1523.8308 P37840;E7EPV7;D6RA31 P37840 44 58 SNCA Alpha-synuclein yes no 2;3 1.1524E-75 210.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 8 4 8 12 14 0.014358 0.012948 152.17 31 Median 0.1999 0.19979 187.34 4 1 Median 0.02776 0.024715 93.429 6 3 Median 0.01014 0.0088775 37.714 2 2 Median 0.0088074 0.0077335 79.411 5 5 Median 0.0051034 0.0044591 138.24 6 6 Median 0.011385 0.010088 106.39 8 7 Median 1735000000 1718000000 16979000 34384000 30600000 3784000 258370000 252170000 6199000 45812000 45745000 66278 209970000 206290000 3682900 674930000 672280000 2646300 511500000 510890000 600910 33291 2271 35000 174324;174325;174326;174327;174328;174329;174330;174331;174332;174333;174334;174335;174336;174337;174338;174339;174340;174341;174342;174343;174344;174345;174346;174347;174348;174349;174350;174351;174352;174353;174354;174355;174356;174357;174358;174359;174360;174361;174362;174363;174364;174365;174366;174367;174368;174369;174370;174371;174372;174373;174374 176080;176081;176082;176083;176084;176085;176086;176087;176088;176089;176090;176091;176092;176093;176094;176095;176096;176097;176098;176099;176100;176101;176102;176103;176104;176105;176106;176107;176108;176109;176110;176111;176112;176113;176114;176115;176116;176117;176118;176119;176120;176121;176122;176123;176124;176125;176126;176127;176128;176129;176130;176131;176132;176133;176134;176135;176136;176137;176138;176139;176140;176141;176142 176140 63 TKENDAHLVEVNLNNIK DEPPNPTNVEESLKRTKENDAHLVEVNLNN ENDAHLVEVNLNNIKNIPIPTLKDFAKALE R T K I K N 1 0 4 1 0 0 2 0 1 1 2 2 0 0 0 0 1 0 0 2 0 0 17 1 1950.0171 Q9NYL9;H0YKU1;H0YNJ8 Q9NYL9 193 209 TMOD3 Tropomodulin-3 yes no 3 1.6414E-05 59.261 By MS/MS 1 0.67277 0.73313 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67277 0.73313 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15131000 8568100 6563100 0 0 0 0 0 0 15131000 8568100 6563100 0 0 0 0 0 0 0 0 0 33292 4178 35001 174375 176143 176143 1 TKENEEELER KVFDAFLNMMADKAKTKENEEELERHAQFL ADKAKTKENEEELERHAQFLLVNFNHIHKR K T K E R H 0 1 1 0 0 0 5 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 10 1 1275.5943 P42356 P42356 957 966 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 3 0.061818 15.539 By matching By MS/MS 1 1 1.0169 1.1233 30.376 2 Median 1.3514 1.3924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7652 0.90617 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 510310 273050 237260 101330 37647 63686 0 0 0 408980 235410 173570 0 0 0 0 0 0 0 0 0 33293 2311 35002 174376;174377 176144 176144 1 TKENILEEFSK VANNRLFVGSIPKNKTKENILEEFSKVTEG PKNKTKENILEEFSKVTEGLVDVILYHQPD K T K S K V 0 0 1 0 0 0 3 0 0 1 1 2 0 1 0 1 1 0 0 0 0 0 11 1 1336.6874 O43390;B4DT28 O43390 258 268 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 2;3 3.4552E-12 150.04 By matching By MS/MS By matching By MS/MS By matching 2 5 3 9 2 1.0181 1.0794 81.438 21 Median NaN NaN NaN 0 0 Median 1.0171 0.96743 5.6953 2 0 Median 0.99477 1.0794 24.642 5 1 Median 1.1566 1.068 127.78 3 0 Median 0.99662 1.0816 96.669 9 2 Median 1.3505 1.1939 1.3885 2 0 Median 457750000 199720000 258030000 0 0 0 4095200 1835900 2259200 180150000 83915000 96234000 3891500 2733500 1158000 262910000 108290000 154630000 6704900 2952900 3752000 33294 1568 35003 174378;174379;174380;174381;174382;174383;174384;174385;174386;174387;174388;174389;174390;174391;174392;174393;174394;174395;174396;174397;174398 176145;176146;176147;176148;176149;176150;176151;176152;176153;176154;176155;176156;176157;176158;176159;176160;176161;176162;176163;176164;176165;176166;176167 176153 23 TKENVNATENCISAVGK ALPLLVRVIQSADSKTKENVNATENCISAV ENVNATENCISAVGKIMKFKPDCVNVEEVL K T K G K I 2 0 3 0 1 0 2 1 0 1 0 2 0 0 0 1 2 0 0 2 0 0 17 1 1833.8891 O00410;H0Y8C6 O00410 962 978 IPO5 Importin-5 yes no 3 0.019291 19.791 By MS/MS 1 1.2282 1.1474 NaN 1 Median NaN NaN NaN 0 0 Median 1.2282 1.1474 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2618600 951060 1667600 0 0 0 2618600 951060 1667600 0 0 0 0 0 0 0 0 0 0 0 0 33295 1460 35004 174399 176168 176168 1 TKENVVQSVTSVAEK AAEKTKEGVMYVGAKTKENVVQSVTSVAEK TKENVVQSVTSVAEKTKEQANAVSEAVVSS K T K E K T 1 0 1 0 0 1 2 0 0 0 0 2 0 0 0 2 2 0 0 4 0 0 15 1 1617.8574 O76070 O76070 44 58 SNCG Gamma-synuclein yes yes 2;3 3.5427E-07 83.617 By MS/MS 2 2.3908 2.0726 25.046 2 Median NaN NaN NaN 0 0 Median 2.3908 2.0726 25.046 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9333700 2438700 6895000 0 0 0 9333700 2438700 6895000 0 0 0 0 0 0 0 0 0 0 0 0 33296 1720 35005 174400;174401 176169;176170 176170 2 TKEQILEEFSK VANNRLFVGSIPKSKTKEQILEEFSKVTEG PKSKTKEQILEEFSKVTEGLTDVILYHQPD K T K S K V 0 0 0 0 0 1 3 0 0 1 1 2 0 1 0 1 1 0 0 0 0 0 11 1 1350.7031 B7Z645;O60506 O60506 255 265 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2;3 3.5366E-06 166.86 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 4 2 5 2 0.98786 0.92629 35.352 16 Median 1.0349 0.96731 28.431 3 0 Plateau 1.575 1.4181 NaN 1 0 Median 1.2158 1.3086 25.66 4 1 Median 0.73378 0.66536 78.905 2 0 Median 0.90411 0.98175 23.158 4 1 Median 0.93136 0.83865 6.2404 2 0 Median 125420000 61206000 64218000 33105000 16287000 16818000 352790 163670 189130 49627000 22385000 27242000 7486100 3339900 4146200 33119000 18181000 14938000 1733700 849090 884620 33297 1619;634 35006 174402;174403;174404;174405;174406;174407;174408;174409;174410;174411;174412;174413;174414;174415;174416;174417;174418 176171;176172;176173;176174;176175;176176;176177;176178;176179;176180;176181;176182;176183;176184;176185;176186 176172 16 TKEQLGYIVFSGPR LFCQIISEPCFNTLRTKEQLGYIVFSGPRR RTKEQLGYIVFSGPRRANGIQGLRFIIQSE R T K P R R 0 1 0 0 0 1 1 2 0 1 1 1 0 1 1 1 1 0 1 1 0 0 14 1 1593.8515 P14735;A0A3B3ISG5 P14735 825 838 IDE Insulin-degrading enzyme yes no 3 0.056376 22.365 By MS/MS 1 1.0343 1.0762 NaN 1 Median 1.0343 1.0762 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4513200 2243200 2270000 4513200 2243200 2270000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33298 423 35007 174419 176187 176187 1 TKEQVTNVGGAVVTGVTAVAQK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG VGGAVVTGVTAVAQKTVEGAGSIAAATGFV K T K Q K T 3 0 1 0 0 2 1 3 0 0 0 2 0 0 0 0 4 0 0 6 0 0 22 1 2156.1801 P37840;E7EPV7;H6UYS7 P37840 59 80 SNCA Alpha-synuclein yes no 2;3;4 1.0868E-260 347.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 27 14 19 13 18 7 0.64372 0.65975 163.52 96 Median 0.97697 0.9528 79.602 27 5 Median 0.51998 0.47576 136.89 14 3 Median 0.59179 0.68053 167.52 19 5 Median 0.16554 0.14535 162.38 13 4 Median 0.37273 0.40402 237.67 16 4 Median 0.53284 0.46556 222.6 7 1 Median 11332000000 6292300000 5040000000 6615900000 3222900000 3393000000 1162300000 590250000 572010000 1036400000 598060000 438300000 264370000 111070000 153300000 1943500000 1492800000 450740000 309830000 277190000 32639000 33299 2271 35008 174420;174421;174422;174423;174424;174425;174426;174427;174428;174429;174430;174431;174432;174433;174434;174435;174436;174437;174438;174439;174440;174441;174442;174443;174444;174445;174446;174447;174448;174449;174450;174451;174452;174453;174454;174455;174456;174457;174458;174459;174460;174461;174462;174463;174464;174465;174466;174467;174468;174469;174470;174471;174472;174473;174474;174475;174476;174477;174478;174479;174480;174481;174482;174483;174484;174485;174486;174487;174488;174489;174490;174491;174492;174493;174494;174495;174496;174497;174498;174499;174500;174501;174502;174503;174504;174505;174506;174507;174508;174509;174510;174511;174512;174513;174514;174515;174516;174517 176188;176189;176190;176191;176192;176193;176194;176195;176196;176197;176198;176199;176200;176201;176202;176203;176204;176205;176206;176207;176208;176209;176210;176211;176212;176213;176214;176215;176216;176217;176218;176219;176220;176221;176222;176223;176224;176225;176226;176227;176228;176229;176230;176231;176232;176233;176234;176235;176236;176237;176238;176239;176240;176241;176242;176243;176244;176245;176246;176247;176248;176249;176250;176251;176252;176253;176254;176255;176256;176257;176258;176259;176260;176261;176262;176263;176264;176265;176266;176267;176268;176269;176270;176271;176272;176273;176274;176275;176276;176277;176278;176279;176280;176281;176282;176283;176284;176285;176286;176287;176288;176289;176290;176291;176292;176293;176294;176295;176296;176297;176298;176299;176300;176301;176302;176303;176304;176305;176306;176307;176308;176309;176310;176311;176312;176313;176314;176315;176316;176317;176318;176319;176320;176321;176322;176323;176324;176325;176326;176327;176328;176329;176330;176331 176201 144 TKEVIQEWNLTNIKR LLGITKECVMRVDEKTKEVIQEWNLTNIKR TKEVIQEWNLTNIKRWAASPKSFTLDFGDY K T K K R W 0 1 2 0 0 1 2 0 0 2 1 2 0 0 0 0 2 1 0 1 0 0 15 2 1871.0265 Q9Y490 Q9Y490 344 358 TLN1 Talin-1 yes yes 3;4 3.3879E-05 80.387 By MS/MS By matching 2 1 1.1964 1.3367 7.3728 3 Median 1.23 1.3002 3.9146 2 0 Median NaN NaN NaN 0 0 Median 1.1078 1.4636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21825000 9648000 12177000 17983000 8056200 9926400 0 0 0 3842800 1591800 2250900 0 0 0 0 0 0 0 0 0 33300 4441 35009 174518;174519;174520 176332;176333 176332 2 TKEVYELLDSPGK TAEVLNIGKKLYEGKTKEVYELLDSPGKVL GKTKEVYELLDSPGKVLLQSKDQITAGNAA K T K G K V 0 0 0 1 0 0 2 1 0 0 2 2 0 0 1 1 1 0 1 1 0 0 13 1 1477.7664 P22234;E9PBS1 P22234 18 30 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2;3 3.3803E-06 122.51 By MS/MS By matching By MS/MS By MS/MS 3 1 2 2 0.97618 0.95451 7.9872 8 Median 1.0489 0.99522 8.081 3 0 Median 1.0171 0.95576 NaN 1 0 Median 0.92333 0.96702 3.1991 2 0 Median 0.91961 0.87346 12.364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93320000 46828000 46492000 60471000 30615000 29856000 3381200 1768800 1612400 14938000 7581300 7357000 14529000 6862800 7666300 0 0 0 0 0 0 33301 909 35010 174521;174522;174523;174524;174525;174526;174527;174528 176334;176335;176336;176337;176338;176339;176340;176341;176342 176334 9 TKEYASEGEPLFAGGSAIPK QTVPYVVPLSPKLPKTKEYASEGEPLFAGG SEGEPLFAGGSAIPKEENLSEDSKSSSLNS K T K P K E 3 0 0 0 0 0 3 3 0 1 1 2 0 1 2 2 1 0 1 0 0 0 20 1 2051.0211 Q9UQR0;B4DRC2;H0Y6S1 Q9UQR0 517 536 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.051603 28.418 By MS/MS 1 1.0113 1.1282 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.1282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10446000 4883300 5563100 0 0 0 0 0 0 10446000 4883300 5563100 0 0 0 0 0 0 0 0 0 33302 4363 35011 174529 176343 176343 0 TKFENLCK LPEDEEEKKKQEEKKTKFENLCKIMKDILE KKQEEKKTKFENLCKIMKDILEKKVEKVVV K T K C K I 0 0 1 0 1 0 1 0 0 0 1 2 0 1 0 0 1 0 0 0 0 0 8 1 1038.5168 P07900;Q58FG0 P07900 566 573 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2 0.0051609 148.04 By MS/MS 1 1.0469 1.014 NaN 1 Median NaN NaN NaN 0 0 Median 1.0469 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10994000 5144300 5850100 0 0 0 10994000 5144300 5850100 0 0 0 0 0 0 0 0 0 0 0 0 33303 1894 35012 174530 176344 176344 1 TKFETEQALR LLQIDNARLAADDFRTKFETEQALRLSVEA ADDFRTKFETEQALRLSVEADINGLRRVLD R T K L R L 1 1 0 0 0 1 2 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 1 1221.6354 CON__Q04695;Q04695;F5GWP8;CON__P08727;P08727;C9JM50 CON__Q04695 171 180 KRT17;KRT19 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2;3 2.5798E-06 159.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 6 6 5 9 1.0254 1.0754 45.001 35 Median 1.1073 1.1162 16.648 5 2 Median 0.97983 0.89528 36.617 5 2 Median 1.0253 1.1707 83.072 6 1 Median 0.75816 0.72393 47.476 6 1 Median 1.0254 1.1232 20.723 5 0 Median 1.0822 0.91383 20.018 8 1 Median 413470000 197190000 216280000 24551000 11740000 12810000 30665000 12148000 18517000 115840000 56490000 59351000 53310000 27217000 26093000 104030000 48514000 55518000 85076000 41084000 43992000 + 33304 768;752 35013 174531;174532;174533;174534;174535;174536;174537;174538;174539;174540;174541;174542;174543;174544;174545;174546;174547;174548;174549;174550;174551;174552;174553;174554;174555;174556;174557;174558;174559;174560;174561;174562;174563;174564;174565;174566 176345;176346;176347;176348;176349;176350;176351;176352;176353;176354;176355;176356;176357;176358;176359;176360;176361;176362;176363;176364;176365;176366;176367;176368;176369;176370;176371;176372;176373;176374;176375;176376;176377;176378;176379;176380;176381;176382;176383;176384;176385;176386;176387;176388;176389;176390;176391;176392;176393;176394;176395;176396;176397 176358 53 TKFGYHIIMVEGR VSGMDKPVFTDPPVKTKFGYHIIMVEGRK_ VKTKFGYHIIMVEGRK______________ K T K G R K 0 1 0 0 0 0 1 2 1 2 0 1 1 1 0 0 1 0 1 1 0 0 13 1 1549.8075 Q9Y237 Q9Y237 118 130 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 3 0.0011375 43.813 By matching By MS/MS 1 1 0.86491 0.82837 30.405 2 Median NaN NaN NaN 0 0 Median 0.75673 0.66812 NaN 1 0 Median 0.98856 1.0271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8115000 3888300 4226700 0 0 0 568400 276570 291830 7546600 3611700 3934800 0 0 0 0 0 0 0 0 0 33305 4370 35014 174567;174568 176398;176399 176398 2 TKFPAEQYYR REHFGTVKTHLTSLKTKFPAEQYYRFHEHW LTSLKTKFPAEQYYRFHEHWRFVLQRLVFL K T K Y R F 1 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 0 2 0 0 0 10 1 1301.6404 E9PGT1;Q15631;H7C1D4 E9PGT1 72 81 TSN Translin yes no 2;3 0.00019384 110.87 By MS/MS By MS/MS 2 1 1.2761 1.3309 31.364 3 Median 1.081 1.128 23.393 2 0 Median 1.9286 1.7895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39796000 20571000 19225000 34369000 18507000 15863000 5427000 2064500 3362500 0 0 0 0 0 0 0 0 0 0 0 0 33306 925 35015 174569;174570;174571 176400;176401;176402;176403;176404;176405;176406 176406 7 TKFTIENVTR HLSRAIGRIAGKGGKTKFTIENVTRTRIVL GKGGKTKFTIENVTRTRIVLADVKVHILGS K T K T R T 0 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 3 0 0 1 0 0 10 1 1207.6561 Q9NRX1 Q9NRX1 190 199 PNO1 RNA-binding protein PNO1 yes yes 2;3 0.0016545 84.213 By MS/MS 2 1.3025 1.3787 5.5755 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3025 1.3787 5.5755 2 1 Median NaN NaN NaN 0 0 Median 16301000 7023800 9276900 0 0 0 0 0 0 0 0 0 0 0 0 16301000 7023800 9276900 0 0 0 33307 4091 35016 174572;174573 176407;176408;176409 176407 3 TKFVDGVSTVAR SLKEGMFNNANVLFKTKFVDGVSTVARFTQ LFKTKFVDGVSTVARFTQCQNGKISKEAKS K T K A R F 1 1 0 1 0 0 0 1 0 0 0 1 0 1 0 1 2 0 0 3 0 0 12 1 1278.6932 O95347 O95347 1159 1170 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0050993 57.348 By MS/MS By matching 1 1 0.88088 0.88595 80.987 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3794 1.5708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56253 0.49969 NaN 1 0 Median 2678200 1169800 1508400 0 0 0 0 0 0 2145100 842730 1302300 0 0 0 0 0 0 533120 327040 206080 33308 1766 35017 174574;174575 176410 176410 1 TKGDFILVGDLMR TECNHYNNIMALYLKTKGDFILVGDLMRSV LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K T K M R S 0 1 0 2 0 0 0 2 0 1 2 1 1 1 0 0 1 0 0 1 0 0 13 1 1463.7806 Q16531;F5GY55 Q16531 916 928 DDB1 DNA damage-binding protein 1 yes no 2;3 0.0005954 80.763 By MS/MS By MS/MS By MS/MS By matching 4 4 5 1 1.0586 1.0864 31.274 13 Median 1.0786 1.1043 12.066 3 0 Median 1.6535 1.5909 24.923 4 0 Linear 0.79264 0.91631 8.1283 5 0 Median 2.643 2.54 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22727000 11349000 11377000 5304800 2621400 2683500 4312400 1697000 2615400 13036000 7016000 6019900 73644 14939 58706 0 0 0 0 0 0 33309 2985 35018 174576;174577;174578;174579;174580;174581;174582;174583;174584;174585;174586;174587;174588;174589 176411;176412;176413;176414;176415;176416;176417;176418;176419;176420;176421;176422 176411 12 TKGFHTTIDIGVK TQVQTTLVALAGLAKTKGFHTTIDIGVKYA AKTKGFHTTIDIGVKYAEKQTRRFDEGKLK K T K V K Y 0 0 0 1 0 0 0 2 1 2 0 2 0 1 0 0 3 0 0 1 0 0 13 1 1415.7773 Q15417;E9PDU6 Q15417 131 143 CNN3 Calponin-3;Calponin yes no 2;3 0.00065131 49.298 By MS/MS By MS/MS By matching By MS/MS 3 1 1 1 1.1382 1.097 26.734 6 Median 1.0982 1.1152 28.479 3 0 Median 1.1802 1.079 NaN 1 0 Median 0.81638 0.92838 NaN 1 0 Median 1.7494 1.5753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41445000 20399000 21046000 31145000 15877000 15268000 4308700 1774600 2534100 2543800 1585000 958750 3447800 1162100 2285700 0 0 0 0 0 0 33310 2950 35019 174590;174591;174592;174593;174594;174595 176423;176424;176425;176426;176427;176428 176423 6 TKGVDEVTIVNILTNR FDAERDALNIETAIKTKGVDEVTIVNILTN KGVDEVTIVNILTNRSNAQRQDIAFAYQRR K T K N R S 0 1 2 1 0 0 1 1 0 2 1 1 0 0 0 0 3 0 0 3 0 0 16 1 1770.984 P07355;H0YN42;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4;H0YKL9;H0YKV8;H0YMD9 P07355 48 63 ANXA2 Annexin A2;Annexin yes no 2;3 2.1349E-05 77.222 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 2 1 1 1.1749 1.1099 25.763 13 Median 1.1509 1.212 30.762 4 0 Median 1.2594 1.1099 29.971 3 0 Plateau 1.3464 1.463 15.406 2 0 Median 1.1444 1.0284 2.5219 2 0 Median 1.0749 1.1638 NaN 1 0 Median 0.978 0.86699 NaN 1 0 Median 170690000 74490000 96203000 32821000 14323000 18498000 28990000 12591000 16399000 20766000 8023800 12743000 76759000 33722000 43036000 3814700 1752000 2062700 7541700 4077700 3464000 33311 1885 35020 174596;174597;174598;174599;174600;174601;174602;174603;174604;174605;174606;174607;174608 176429;176430;176431;176432;176433;176434;176435;176436;176437;176438;176439;176440 176431 12 TKHEEILQNLQK QELKARYERATSETKTKHEEILQNLQKTLL ETKTKHEEILQNLQKTLLDTEDKLKGAREE K T K Q K T 0 0 1 0 0 2 2 0 1 1 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1479.8045 J3KP58;P30622;F5H0N7;A0A3B3ITA2;A0A3B3ISJ8 J3KP58 916 927 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 3 0.00025676 60.691 By MS/MS 2 1.2923 1.2309 19.231 2 Median NaN NaN NaN 0 0 Median 1.2923 1.2309 19.231 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4104800 1577700 2527000 0 0 0 4104800 1577700 2527000 0 0 0 0 0 0 0 0 0 0 0 0 33312 1308 35021 174609;174610 176441 176441 1 TKKPGAGDTAFPGTGGFSATFDYQQAFGNSTGGFDGQAR GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG QAFGNSTGGFDGQARQPTPPFFGRDRSPLR K T K A R Q 5 1 1 3 0 3 0 9 0 0 0 2 0 5 2 2 5 0 1 0 0 0 39 2 3913.7932 Q96PK6 Q96PK6 165 203 RBM14 RNA-binding protein 14 yes yes 4 1.3241E-05 29.561 By MS/MS 1 0.78222 0.92179 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78222 0.92179 NaN 1 0 Median NaN NaN NaN 0 0 Median 4275700 2025100 2250600 0 0 0 0 0 0 0 0 0 0 0 0 4275700 2025100 2250600 0 0 0 33313 3712 35022 174611 176442;176443;176444 176443 3 TKLDLSSLAYSGK SLHELLAAELTKALKTKLDLSSLAYSGKDA LKTKLDLSSLAYSGKDA_____________ K T K G K D 1 0 0 1 0 0 0 1 0 0 3 2 0 0 0 3 1 0 1 0 0 0 13 1 1381.7453 C9JAX1;Q16595 C9JAX1 121 133 FXN Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form yes no 2 0.0013231 88.441 By MS/MS By MS/MS 2 1 0.90723 0.8107 2.9229 3 Median 0.88622 0.82992 3.3133 2 2 Median 0.92879 0.80517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10076000 5039000 5037400 6728200 3391300 3336900 3348200 1647600 1700500 0 0 0 0 0 0 0 0 0 0 0 0 33314 685 35023 174612;174613;174614 176445;176446;176447 176445 3 TKLESLSQVGPVNENVMEEDLK DKKGNRKKRAVDTKKTKLESLSQVGPVNEN QVGPVNENVMEEDLKTMIERHLTAKTPTKR K T K L K T 0 0 2 1 0 1 4 1 0 0 3 2 1 0 1 2 1 0 0 3 0 0 22 1 2458.2261 Q14966;A0A096LNS4;A0A096LPK8 Q14966 1819 1840 ZNF638 Zinc finger protein 638 yes no 3 1.9637E-10 62.064 By MS/MS By matching 1 1 0.9459 0.9802 19.691 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73755 0.85279 NaN 1 0 Median 1.2131 1.1266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8384300 4791000 3593300 0 0 0 0 0 0 8202400 4708900 3493600 181830 82085 99746 0 0 0 0 0 0 33315 2903 35024 174615;174616 176448;176449 176449 2 TKLHQLSGSDQLESTAHSR RHTEMIHNYMEHLERTKLHQLSGSDQLEST QLSGSDQLESTAHSRIRKERPISLGIFPLP R T K S R I 1 1 0 1 0 2 1 1 2 0 3 1 0 0 0 4 2 0 0 0 0 0 19 1 2094.0454 A0A087X2D8;O60271 A0A087X2D8 177 195 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3;4 3.2994E-08 63.578 By MS/MS By MS/MS By MS/MS 4 1 1 1.2135 1.1845 16.71 6 Median 1.1248 1.1505 11.111 4 0 Median 1.2554 1.168 NaN 1 0 Median 1.4042 1.6187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26765000 12630000 14135000 19921000 9575000 10346000 6209200 2770100 3439100 634130 284640 349490 0 0 0 0 0 0 0 0 0 33316 134 35025 174617;174618;174619;174620;174621;174622 176450;176451;176452;176453;176454;176455;176456;176457;176458 176457 9 TKLQNKEHVIEALR TVARVHIGQVIMSIRTKLQNKEHVIEALRR RTKLQNKEHVIEALRRAKFKFPGRQKIHIS R T K L R R 1 1 1 0 0 1 2 0 1 1 2 2 0 0 0 0 1 0 0 1 0 0 14 2 1677.9526 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5 F8W7C6 89 102 RPL10 60S ribosomal protein L10 yes no 3;4 0.00020152 64.394 By MS/MS By MS/MS 2 2 1.0965 1.0639 12.533 4 Median 1.0401 1.1075 13.259 2 0 Median 1.1673 1.0121 14.64 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17860000 8732800 9127300 12667000 6335800 6331400 5192900 2396900 2796000 0 0 0 0 0 0 0 0 0 0 0 0 33317 1084 35026 174623;174624;174625;174626 176459;176460;176461;176462;176463;176464 176462 6 TKNETDEDGWTTVR KASWRAEKDRESLRRTKNETDEDGWTTVRR RTKNETDEDGWTTVRR______________ R T K V R R 0 1 1 2 0 0 2 1 0 0 0 1 0 0 0 0 4 1 0 1 0 0 14 1 1650.7485 Q14152 Q14152 1368 1381 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 0.00010159 129.84 By MS/MS By MS/MS By MS/MS 2 2 1 1.0789 1.0871 12.389 5 Median 1.0073 1.014 9.8412 2 0 Median 1.1172 1.0584 18.73 2 1 Median NaN NaN NaN 0 0 Median 1.2294 1.1869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28114000 13847000 14267000 16412000 8271100 8140600 9832700 4706700 5126100 0 0 0 1870000 869200 1000800 0 0 0 0 0 0 33318 2860 35027 174627;174628;174629;174630;174631 176465;176466;176467;176468;176469;176470;176471 176467 7 TKNETDEDGWTTVRR KASWRAEKDRESLRRTKNETDEDGWTTVRR TKNETDEDGWTTVRR_______________ R T K R R - 0 2 1 2 0 0 2 1 0 0 0 1 0 0 0 0 4 1 0 1 0 0 15 2 1806.8497 Q14152 Q14152 1368 1382 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 3;4 0.00011114 54.598 By MS/MS By matching 2 1 1.0808 1.094 9.0572 3 Plateau 1.063 1.0846 2.6565 2 0 Median NaN NaN NaN 0 0 Median 0.77417 0.93032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18613000 8804900 9808500 18034000 8525000 9509300 0 0 0 579160 279890 299270 0 0 0 0 0 0 0 0 0 33319 2860 35028 174632;174633;174634 176472;176473;176474 176474 3 TKNLSSNEAISLEEIR AQKGFNKVVLKHLKKTKNLSSNEAISLEEI KNLSSNEAISLEEIRIRVVQMLGSLGGQIN K T K I R I 1 1 2 0 0 0 3 0 0 2 2 1 0 0 0 3 1 0 0 0 0 0 16 1 1802.9374 P78527 P78527 837 852 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 1.7322E-10 105.53 By MS/MS 1 0.71326 0.82753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71326 0.82753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15213000 10274000 4939700 0 0 0 0 0 0 15213000 10274000 4939700 0 0 0 0 0 0 0 0 0 33320 2647 35029 174635 176475 176475 1 TKPADMVIEAYGHGQR RDLPAIQPRLVAVSKTKPADMVIEAYGHGQ KPADMVIEAYGHGQRTFGENYVQELLEKAS K T K Q R T 2 1 0 1 0 1 1 2 1 1 0 1 1 0 1 0 1 0 1 1 0 0 16 1 1771.8676 O94903;E5RG77;E5RFZ4 O94903 48 63 PROSC Proline synthase co-transcribed bacterial homolog protein yes no 3 6.3772E-07 78.285 By MS/MS 1 0.83186 0.83846 NaN 1 Median 0.83186 0.83846 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18175000 8991700 9183400 18175000 8991700 9183400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33321 1734 35030 174636 176476 176476 1 TKPHLFYIPGR WNEHNAKIIKYIRTKTKPHLFYIPGRMCPA IRTKTKPHLFYIPGRMCPATQKLIEESQRK K T K G R M 0 1 0 0 0 0 0 1 1 1 1 1 0 1 2 0 1 0 1 0 0 0 11 1 1327.7401 Q9H307 Q9H307 237 247 PNN Pinin yes yes 2;3 0.00015074 69.954 By matching By MS/MS By MS/MS 1 5 2 0.8346 0.90055 11.5 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8736 0.99318 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8266 0.90946 9.1571 4 0 Median 0.91554 0.80801 11.852 2 0 Median 73854000 38308000 35546000 0 0 0 0 0 0 2291500 1079800 1211700 0 0 0 60557000 31264000 29293000 11006000 5965000 5041000 33322 3950 35031 174637;174638;174639;174640;174641;174642;174643;174644 176477;176478;176479;176480;176481;176482;176483;176484 176477 8 TKPIVKPQTSPEYGQGINPISR PLPAVERVKPRIKKKTKPIVKPQTSPEYGQ QTSPEYGQGINPISRLAQIQQAKKEKEPEY K T K S R L 0 1 1 0 0 2 1 2 0 3 0 2 0 0 4 2 2 0 1 1 0 0 22 2 2409.3016 O95793;A0A087X1A5 O95793 269 290 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 3;4 2.7942E-08 59.356 By MS/MS By matching By matching By MS/MS By MS/MS By matching 4 2 1 2 2 2 0.61689 0.66223 21.138 13 Median 0.60098 0.66098 22.238 4 1 Median 0.8047 0.82458 36.67 2 0 Median 0.59727 0.73446 NaN 1 0 Median 0.60929 0.62868 20.71 2 0 Median 0.64467 0.73745 7.8875 2 0 Median 0.64412 0.6 3.5959 2 0 Median 77112000 45404000 31708000 37796000 22914000 14882000 3479200 2008700 1470600 2846000 1735100 1110800 5339900 2853100 2486800 21146000 12166000 8980500 6505000 3728100 2776900 33323 1794 35032 174645;174646;174647;174648;174649;174650;174651;174652;174653;174654;174655;174656;174657 176485;176486;176487;176488;176489;176490 176489 6 TKPIWTR KKIKEKYIDQEELNKTKPIWTRNPDDITNE IDQEELNKTKPIWTRNPDDITNEEYGEFYK K T K T R N 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 7 1 900.51814 P07900;Q14568;Q58FG0;P08238;Q58FF8 P07900 293 299 HSP90AA1;HSP90AA2P;HSP90AA5P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.051408 81.297 By MS/MS By MS/MS By matching By matching By matching 4 2 1 1 2 1.055 1.0174 14.573 10 Median 1.0304 1.0511 21.85 4 0 Median 0.99531 0.93913 10.566 2 0 Median 0.92675 1.0527 NaN 1 0 Median 1.086 1.0228 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2152 1.0792 10.321 2 0 Median 550350000 269960000 280380000 141440000 69578000 71861000 396930000 194530000 202410000 3586900 1722200 1864600 3500600 1737100 1763500 0 0 0 4887100 2398400 2488700 33324 1894;1899;3040 35033 174658;174659;174660;174661;174662;174663;174664;174665;174666;174667 176491;176492 176491 2 TKPSDEEMLFIYGHYK EAEFEKAAEEVRHLKTKPSDEEMLFIYGHY KPSDEEMLFIYGHYKQATVGDINTERPGML K T K Y K Q 0 0 0 1 0 0 2 1 1 1 1 2 1 1 1 1 1 0 2 0 0 0 16 1 1956.9291 A0A0A0MTI5;B8ZWD1;P07108 A0A0A0MTI5 74 89 DBI Acyl-CoA-binding protein yes no 3 0.0025711 29.341 By MS/MS 1 1.0149 1.0295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0149 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7924000 4405300 3518800 0 0 0 0 0 0 7924000 4405300 3518800 0 0 0 0 0 0 0 0 0 33325 193 35034 174668 176493;176494 176493 2 TKPSPSQFMPLVVDYR VQSGDTAVMVTAVSKTKPSPSQFMPLVVDY KPSPSQFMPLVVDYRQKAAAAGRIPTNYLR K T K Y R Q 0 1 0 1 0 1 0 0 0 0 1 1 1 1 3 2 1 0 1 2 0 0 16 1 1863.9553 Q8TCS8;H7BXF6 Q8TCS8 88 103 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes no 2;3 0.027136 32.498 By MS/MS By matching By matching 2 1 1 0.73067 0.76202 37.669 4 Median 0.52031 0.53219 38.77 2 0 Median NaN NaN NaN 0 0 Median 0.78125 0.82947 NaN 1 0 Median 0.99237 0.95644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8352300 5160900 3191500 4587900 2985900 1602000 0 0 0 3305000 1946300 1358700 459420 228680 230740 0 0 0 0 0 0 33326 3467 35035 174669;174670;174671;174672 176495;176496 176496 2 TKPVTGNLRPEEALQALTIYEGK AVESRTTDLLTDWEKTKPVTGNLRPEEALQ RPEEALQALTIYEGKFGRLKDDREKCAKAK K T K G K F 2 1 1 0 0 1 3 2 0 1 3 2 0 0 2 0 3 0 1 1 0 0 23 2 2527.3646 Q14204 Q14204 1264 1286 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 1.5368E-11 52.061 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 2 1 1 0.70432 0.80321 35.23 11 Median 0.69806 0.74339 6.8942 4 1 Median 0.70489 0.80321 8.3993 3 0 Median 0.65151 0.86266 6.2873 2 0 Median 0.94134 1.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3241 2.3845 NaN 1 0 Median 108600000 63901000 44699000 76578000 45934000 30644000 21121000 11740000 9380800 10562000 6085200 4476300 220240 106500 113740 0 0 0 120790 36203 84587 33327 2865 35036 174673;174674;174675;174676;174677;174678;174679;174680;174681;174682;174683 176497;176498;176499;176500;176501;176502;176503;176504;176505;176506 176505 10 TKPYIQVDIGGGQTK QQDIKFLPFKVVEKKTKPYIQVDIGGGQTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM K T K T K T 0 0 0 1 0 2 0 3 0 2 0 2 0 0 1 0 2 0 1 1 0 0 15 1 1603.857 P11021 P11021 124 138 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 8.1353E-09 156 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 4 3 1.0534 1.0477 21.454 17 Median 0.93173 0.86687 18.84 5 0 Median 1.0855 1.0289 2.7006 4 0 Median 1.0301 1.1286 2.928 2 0 Median 1.3062 1.2405 13.971 4 0 Median 1.263 1.4142 28.404 2 0 Median NaN NaN NaN 0 0 Median 438490000 212770000 225720000 201490000 101090000 100410000 93746000 45984000 47762000 91504000 45590000 45914000 30317000 11933000 18384000 21432000 8181400 13250000 0 0 0 33328 1948 35037 174684;174685;174686;174687;174688;174689;174690;174691;174692;174693;174694;174695;174696;174697;174698;174699;174700;174701 176507;176508;176509;176510;176511;176512;176513;176514;176515;176516;176517;176518;176519;176520;176521;176522;176523;176524;176525;176526;176527;176528;176529;176530;176531;176532;176533;176534;176535;176536;176537;176538;176539 176519 33 TKQDEVNAAWQR AKLIQEQHPEEELIKTKQDEVNAAWQRLKG LIKTKQDEVNAAWQRLKGLALQRQGKLFGA K T K Q R L 2 1 1 1 0 2 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 12 1 1444.7059 A0A0D9SF54;Q13813 Q13813 228 239 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.8502E-09 136.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 3 2 2 1.1418 1.0728 32.341 9 Median 1.5664 1.603 NaN 1 0 Median 1.2599 1.1679 10.7 2 0 Median NaN NaN NaN 0 0 Median 1.1468 1.0682 0.61296 2 0 Median 0.65368 0.73914 58.622 2 0 Median 1.0171 0.90348 0.49642 2 1 Median 40560000 19499000 21061000 1799100 832230 966830 21532000 10317000 11215000 0 0 0 3873900 1879900 1993900 8819800 4387500 4432300 4535100 2082200 2452900 33329 264;2838 35038 174702;174703;174704;174705;174706;174707;174708;174709;174710;174711;174712 176540;176541;176542;176543;176544;176545;176546;176547;176548;176549;176550;176551;176552;176553;176554;176555 176542 16 TKQFIDSNPNQPLVILEMESGASAK DRASKADVQKRVLEKTKQFIDSNPNQPLVI QPLVILEMESGASAKALNEALKLFKMHSPQ K T K A K A 2 0 2 1 0 2 2 1 0 2 2 2 1 1 2 3 1 0 0 1 0 0 25 1 2716.3742 P49588 P49588 845 869 AARS Alanine--tRNA ligase, cytoplasmic yes yes 3 3.5374E-08 41.087 By MS/MS 1 0.8354 0.88294 NaN 1 Median 0.8354 0.88294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2347000 1247600 1099400 2347000 1247600 1099400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33330 2385 35039 174713 176556;176557 176557 2 TKQTMHGILER NNVKFTHAFSSDLMRTKQTMHGILERSKFC DLMRTKQTMHGILERSKFCKDMTVKYDSRL R T K E R S 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 0 2 0 0 0 0 0 11 1 1312.6922 Q9NQ88;A0A0U1RQD1 Q9NQ88 62 72 TIGAR Fructose-2,6-bisphosphatase TIGAR yes no 3 0.048699 18.073 By MS/MS 1 1.182 1.169 NaN 1 Median 1.182 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1449400 553110 896290 1449400 553110 896290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33331 4061 35040 174714 176558 176558 1 TKSDMMEENIDTSAQAVAETK PEVKPKRTSSSRKMKTKSDMMEENIDTSAQ EENIDTSAQAVAETKQEAVVEEDYNENAKN K T K T K Q 3 0 1 2 0 1 3 0 0 1 0 2 2 0 0 2 3 0 0 1 0 0 21 1 2298.0355 Q5JSL0;Q5JSK6;P82970;Q5JSK7;Q5JSK8;Q5JSK9 Q5JSL0 47 67 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 yes no 3 1.0085E-11 63.726 By MS/MS 2 0.96488 1.0112 28.35 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96488 1.0112 28.35 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10657000 5723400 4934000 0 0 0 0 0 0 10657000 5723400 4934000 0 0 0 0 0 0 0 0 0 33332 2660 35041 174715;174716 176559 176559 1 TKSENGLEFTSSGSANTETTK FTKGYGFGLIKLDLKTKSENGLEFTSSGSA LEFTSSGSANTETTKVTGSLETKYRWTEYG K T K T K V 1 0 2 0 0 0 3 2 0 0 1 2 0 1 0 4 5 0 0 0 0 0 21 1 2188.0132 P21796;C9JI87 P21796 33 53 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2;3 2.0831E-32 179.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 1 1 4 1.2264 1.1246 13.392 16 Median 1.0856 1.0561 9.37 5 0 Median 1.4409 1.2123 5.4159 4 0 Linear 1.2234 1.2794 NaN 1 0 Median 1.1724 1.0294 NaN 1 0 Median 1.5284 1.6138 NaN 1 0 Median 1.2566 1.0618 9.741 4 0 Median 174810000 73627000 101180000 70866000 31164000 39702000 51266000 19785000 31482000 7246500 3155000 4091600 16368000 7580100 8788400 7836000 3175200 4660800 21223000 8768600 12454000 33333 2092 35042 174717;174718;174719;174720;174721;174722;174723;174724;174725;174726;174727;174728;174729;174730;174731;174732 176560;176561;176562;176563;176564;176565;176566;176567;176568;176569;176570;176571;176572;176573;176574;176575;176576;176577;176578;176579;176580;176581;176582;176583;176584;176585;176586;176587;176588 176566 29 TKSQGGEPTYNVAVGR RDSLYVDGDCTMDIRTKSQGGEPTYNVAVG KSQGGEPTYNVAVGRAGRALVIVMGKEGVH R T K G R A 1 1 1 0 0 1 1 3 0 0 0 1 0 0 1 1 2 0 1 2 0 0 16 1 1662.8325 C9J0J7;G5E9Q6;C9JQ45;C9J712;P35080 C9J0J7 41 56 PFN2 Profilin;Profilin-2 no no 2;3 3.0854E-05 72.175 By MS/MS By MS/MS 1 2 1.0707 1.045 11.725 3 Plateau 0.95557 0.93703 NaN 1 0 Median 1.0669 0.94199 16.577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15093000 7128100 7964700 4879700 2361200 2518500 10213000 4766900 5446200 0 0 0 0 0 0 0 0 0 0 0 0 33334 668;680 35043 174733;174734;174735 176589;176590;176591;176592;176593;176594;176595 176592 7 TKSTGGAPTFNVTVTK RDSLLQDGEFSMDLRTKSTGGAPTFNVTVT KSTGGAPTFNVTVTKTDKTLVLLMGKEGVH R T K T K T 1 0 1 0 0 0 0 2 0 0 0 2 0 1 1 1 5 0 0 2 0 0 16 1 1607.8519 P07737;K7EJ44 P07737 90 105 PFN1 Profilin-1 yes no 2;3 5.9092E-19 183.23 By MS/MS By MS/MS By MS/MS 5 2 1 1.028 0.89362 14.279 8 Median 1.0721 1.0476 16.092 5 0 Median 1.028 0.89115 0.76359 2 0 Median 0.86034 0.87724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 322120000 156440000 165680000 94491000 46627000 47864000 223860000 108240000 115620000 3772600 1576800 2195900 0 0 0 0 0 0 0 0 0 33335 1889 35044 174736;174737;174738;174739;174740;174741;174742;174743 176596;176597;176598;176599;176600;176601;176602;176603;176604;176605;176606 176605 11 TKTDELLALGR ELLHSQNTWLNTELKTKTDELLALGREKGN TELKTKTDELLALGREKGNEILELKCNLEN K T K G R E 1 1 0 1 0 0 1 1 0 0 3 1 0 0 0 0 2 0 0 0 0 0 11 1 1215.6823 P12270 P12270 203 213 TPR Nucleoprotein TPR yes yes 2 0.00065313 98.044 By MS/MS 2 0.89858 1.0592 7.2297 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89858 1.0592 7.2297 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21636000 10619000 11017000 0 0 0 0 0 0 21636000 10619000 11017000 0 0 0 0 0 0 0 0 0 33336 1978 35045 174744;174745 176607;176608;176609 176608 3 TKTEISEMNR ELQSLAGKHGDDLRRTKTEISEMNRNISRL DDLRRTKTEISEMNRNISRLQAEIEGLKGQ R T K N R N 0 1 1 0 0 0 2 0 0 1 0 1 1 0 0 1 2 0 0 0 0 0 10 1 1207.5867 P05787;CON__P05787;CON__Q9H552 P05787 303 312 KRT8 Keratin, type II cytoskeletal 8 no no 2;3 0.00011143 91.867 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 7 5 11 9 1.2895 1.2839 24.465 40 Median 1.4638 1.5117 49.006 4 0 Median 1.4924 1.3808 17.278 4 0 Median 1.2068 1.3298 16.422 7 0 Median 1.1111 1.0483 18.383 5 0 Median 1.4345 1.5485 8.4773 11 1 Median 1.1713 1.0303 9.5501 9 0 Median 290760000 123820000 166940000 32287000 14601000 17686000 40982000 16730000 24252000 35986000 15558000 20428000 7609400 3449000 4160400 116840000 47932000 68910000 57050000 25550000 31500000 + 33337 750;792 35046 174746;174747;174748;174749;174750;174751;174752;174753;174754;174755;174756;174757;174758;174759;174760;174761;174762;174763;174764;174765;174766;174767;174768;174769;174770;174771;174772;174773;174774;174775;174776;174777;174778;174779;174780;174781;174782;174783;174784;174785 176610;176611;176612;176613;176614;176615;176616;176617;176618;176619;176620;176621;176622;176623;176624;176625;176626;176627;176628;176629;176630;176631;176632;176633;176634;176635;176636;176637;176638;176639;176640;176641;176642;176643;176644;176645;176646;176647;176648;176649;176650;176651;176652;176653;176654;176655;176656;176657;176658;176659;176660;176661 176626 52 TKTGISEEAAIEENKR ELNVGNEASFHGQERTKTGISEEAAIEENK KTGISEEAAIEENKRNDDSEADTAKLNAKE R T K K R N 2 1 1 0 0 0 4 1 0 2 0 2 0 0 0 1 2 0 0 0 0 0 16 2 1774.9061 Q5UIP0;H7C2B5 Q5UIP0 1933 1948 RIF1 Telomere-associated protein RIF1 yes no 3 0.002991 27.85 By MS/MS 1 0.67172 0.88746 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67172 0.88746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1457400 921370 536070 0 0 0 0 0 0 1457400 921370 536070 0 0 0 0 0 0 0 0 0 33338 3109 35047 174786 176662 176662 1 TKTPGPGAQSALR ITALHIKLRATGGNRTKTPGPGAQSALRAL NRTKTPGPGAQSALRALARSGMKIGRIEDV R T K L R A 2 1 0 0 0 1 0 2 0 0 1 1 0 0 2 1 2 0 0 0 0 0 13 1 1282.6993 P62263;A0A2R8Y811;E5RH77 P62263 105 117 RPS14 40S ribosomal protein S14 yes no 2;3 4.6696E-05 86.898 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 1 1 0.92105 0.85382 16.401 11 Median 0.8439 0.83667 3.193 2 0 Median 0.96751 0.85382 13.676 3 0 Plateau 0.90596 0.94856 4.0889 2 0 Median 0.99594 0.845 13.851 2 0 Median 0.92105 1.0304 NaN 1 0 Median 0.74179 0.59357 NaN 1 0 Median 18414000 9527300 8886400 4880200 2697700 2182600 10084000 5108400 4975900 2273500 1181300 1092200 797630 360540 437100 198760 82068 116700 179310 97397 81913 33339 386 35048 174787;174788;174789;174790;174791;174792;174793;174794;174795;174796;174797 176663;176664;176665;176666;176667;176668;176669;176670 176667 8 TKVEAFQTTISK VAIQEKVLERVNAVKTKVEAFQTTISKYFS AVKTKVEAFQTTISKYFSERGDAVAKASKE K T K S K Y 1 0 0 0 0 1 1 0 0 1 0 2 0 1 0 1 3 0 0 1 0 0 12 1 1351.7347 A0A087X1Z3;Q9UL46;H0YM70 A0A087X1Z3 170 181 PSME2 Proteasome activator complex subunit 2 yes no 2;3 1.4775E-05 131.43 By MS/MS By MS/MS By matching 4 4 1 1.1051 1.0694 9.4201 9 Median 1.0998 1.094 10.602 4 0 Median 1.2164 1.1046 10.483 4 0 Median 1.0522 1.0567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66229000 31988000 34241000 51682000 25106000 26577000 11765000 5454800 6310600 2781600 1427600 1354000 0 0 0 0 0 0 0 0 0 33340 125 35049 174798;174799;174800;174801;174802;174803;174804;174805;174806 176671;176672;176673;176674;176675;176676;176677;176678;176679 176679 9 TKVEATKNETSAPFK DGHTKEMPTSGSKEKTKVEATKNETSAPFK TKVEATKNETSAPFKERPTPSLNNNCTTSE K T K F K E 2 0 1 0 0 0 2 0 0 0 0 3 0 1 1 1 3 0 0 1 0 0 15 2 1649.8625 P07814;V9GYZ6 P07814 719 733 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3;4 0.064012 11.52 By MS/MS By matching 3 1 0.91826 1.0079 5.4114 4 Median 0.96563 1.0523 5.6766 3 0 Median 0.83939 0.96531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6746000 3321800 3424200 6028400 2956300 3072100 717610 365460 352140 0 0 0 0 0 0 0 0 0 0 0 0 33341 1892 35050 174807;174808;174809;174810 176680;176681;176682 176681 3 TKVENGEGTIPVESSDIVPTWDGIR RHYPVFENPKQGKLRTKVENGEGTIPVESS PVESSDIVPTWDGIRLGERLRTMSCSDKIL R T K I R L 0 1 1 2 0 0 3 3 0 3 0 1 0 0 2 2 3 1 0 3 0 0 25 1 2698.345 P55265;A0A3B3IRQ9 P55265 1002 1026 ADAR Double-stranded RNA-specific adenosine deaminase yes no 3 4.2296E-17 65.213 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.86815 0.81535 11.182 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71907 0.81535 NaN 1 0 Median 0.98425 0.94588 NaN 1 0 Median 0.78004 0.87191 17.39 2 0 Median 0.88989 0.78842 NaN 1 0 Median 26733000 14509000 12224000 0 0 0 0 0 0 9447200 5279100 4168100 335050 159580 175470 16739000 8970800 7768400 211410 99266 112140 33342 2498 35051 174811;174812;174813;174814;174815 176683;176684;176685;176686;176687 176686 5 TKVEPYSLTAQQSSLIR GGPSRAGSPRRTSKKTKVEPYSLTAQQSSL VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K T K I R E 1 1 0 0 0 2 1 0 0 1 2 1 0 0 1 3 2 0 1 1 0 0 17 1 1920.0316 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 682 698 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2;3 3.3282E-11 134.98 By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 0.78856 0.77977 20.288 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68888 0.77977 0.92472 2 0 Median 0.78856 0.74696 1.5804 2 0 Median 0.82037 0.85141 11.791 3 0 Median 0.89281 0.8156 37.524 3 0 Median 85617000 49317000 36300000 0 0 0 0 0 0 52906000 30895000 22011000 7593200 4479600 3113600 23037000 12785000 10252000 2081600 1158100 923460 33343 20 35052 174816;174817;174818;174819;174820;174821;174822;174823;174824;174825 176688;176689;176690;176691;176692;176693;176694 176688 7 TKVIESTQDLGNDLAGVMALQR YHLECNETKSWIREKTKVIESTQDLGNDLA QDLGNDLAGVMALQRKLTGMERDLVAIEAK K T K Q R K 2 1 1 2 0 2 1 2 0 1 3 1 1 0 0 1 2 0 0 2 0 0 22 1 2358.2213 Q01082;A0A087WUZ3 Q01082 975 996 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 3.4152E-07 46.953 By MS/MS 1 0.9063 1.0868 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9063 1.0868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6470400 3335800 3134600 0 0 0 0 0 0 6470400 3335800 3134600 0 0 0 0 0 0 0 0 0 33344 2681 35053 174826 176695;176696 176696 2 TKVVVTMEHSAK VKGMGGAMDLVSSAKTKVVVTMEHSAKGNA SAKTKVVVTMEHSAKGNAHKIMEKCTLPLT K T K A K G 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 2 0 0 3 0 0 12 1 1328.7122 P55809;E9PDW2 P55809 435 446 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2;3 0.0016587 42.743 By MS/MS 4 0.90207 0.87389 13.906 4 Median 0.90207 0.87389 13.906 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3905000 2077500 1827500 3905000 2077500 1827500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33345 2503 35054 174827;174828;174829;174830 176697;176698 176698 2 TKYEHELALR ILQIDNARLAADDFRTKYEHELALRQTVEA ADDFRTKYEHELALRQTVEADVNGLRRVLD R T K L R Q 1 1 0 0 0 0 2 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 10 1 1258.667 CON__P08779;P08779 CON__P08779 204 213 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 0.00038026 82.417 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 6 5 3 2 0.093387 0.086987 85.964 17 Median 0.14072 0.14552 58.806 5 5 Median 0.16553 0.15575 111.78 4 4 Median 0.028317 0.032171 34.849 3 3 Median 0.073606 0.06961 31.516 2 2 Median 0.11362 0.1223 108.31 2 2 Median 0.049793 0.044232 NaN 1 1 Median 76663000 71370000 5292800 9825600 8912800 912800 15865000 13901000 1963800 25049000 24424000 625380 7983900 7752000 231890 13186000 11850000 1336400 4753600 4531100 222510 + 33346 754 35055 174831;174832;174833;174834;174835;174836;174837;174838;174839;174840;174841;174842;174843;174844;174845;174846;174847;174848;174849;174850;174851;174852;174853;174854;174855 176699;176700;176701;176702;176703;176704;176705;176706;176707;176708;176709;176710;176711;176712;176713;176714;176715;176716;176717;176718;176719;176720;176721;176722;176723;176724 176723 26 TKYETELNLR LLQIDNARLAADDFRTKYETELNLRMSVEA ADDFRTKYETELNLRMSVEADINGLRRVLD R T K L R M 0 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 10 1 1265.6616 P02533;CON__P02533;CON__Q6IFX2 P02533 202 211 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.00061678 119.75 By MS/MS By MS/MS By MS/MS 2 1 4 0.26386 0.24193 47.857 3 Median 0.21086 0.21375 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37688 0.35378 53.741 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32695000 31620000 1074900 10514000 10268000 246000 11394000 11394000 0 0 0 0 10786000 9957600 828880 0 0 0 0 0 0 + 33347 739;787 35056 174856;174857;174858;174859;174860;174861;174862 176725;176726;176727;176728;176729;176730;176731 176727 7 TKYPTQSGKPPLLVSAPSK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS TQSGKPPLLVSAPSKSESALSCLSKQKKKK K T K S K S 1 0 0 0 0 1 0 1 0 0 2 3 0 0 4 3 2 0 1 1 0 0 19 2 1998.115 G3V529;Q9GZR7;A0A087WXU8;F5GYL3 G3V529 764 782 DDX24 ATP-dependent RNA helicase DDX24 yes no 3;4 0.00012555 37.999 By matching By MS/MS 1 2 0.69548 0.84838 11.45 3 Median 0.96322 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68109 0.83083 2.9564 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15536000 8736500 6799500 1826900 787860 1039000 0 0 0 13709000 7948600 5760500 0 0 0 0 0 0 0 0 0 33348 1118 35057 174863;174864;174865 176732;176733 176733 2 TKYTHLVDQDTTSFDSAWGQESAQNTK LPKVMQVKNFGRSGRTKYTHLVDQDTTSFD SFDSAWGQESAQNTKFFKQKAAGVRDVFER R T K T K F 2 0 1 3 0 3 1 1 1 0 1 2 0 1 0 3 5 1 1 1 0 0 27 1 3057.3952 P55081 P55081 389 415 MFAP1 Microfibrillar-associated protein 1 yes yes 3;4 1.4325E-08 41.047 By MS/MS 2 0.83131 0.88708 31.041 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83131 0.88708 31.041 2 1 Median NaN NaN NaN 0 0 Median 14477000 6372300 8104700 0 0 0 0 0 0 0 0 0 0 0 0 14477000 6372300 8104700 0 0 0 33349 2495 35058 174866;174867 176734;176735 176734 2 TLAAEMQELR EESHNRFSATEVTNKTLAAEMQELRVRLAE EVTNKTLAAEMQELRVRLAEAEETARTAER K T L L R V 2 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1160.586 Q8N163;H0YB24;G3V119 Q8N163 856 865 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.00068446 110.87 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.3233 1.1151 29.675 5 Median 1.796 1.7301 NaN 1 0 Median 1.3233 1.1151 NaN 1 0 Median 0.92983 1.0223 NaN 1 0 Median 1.9172 1.6316 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0607 0.87986 NaN 1 0 Median 35577000 16349000 19228000 12716000 5413800 7302000 5554200 2364600 3189600 14413000 7530400 6882900 2557000 882080 1674900 0 0 0 337040 158470 178560 33350 3354 35059 174868;174869;174870;174871;174872 176736;176737;176738;176739 176736 4 TLAAFPAEK SAAEAGGVFHRARGRTLAAFPAEKESEWKG HRARGRTLAAFPAEKESEWKGPFYFILGAD R T L E K E 3 0 0 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 9 0 946.51238 Q9BRF8 Q9BRF8 17 25 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes yes 2 0.0049104 66.692 By MS/MS By MS/MS 2 1 1.0194 0.85907 71.357 3 Median 0.65172 0.51676 91.985 2 1 Median 1.0194 0.85907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25105000 20948000 4157500 22909000 20049000 2859800 2196400 898750 1297700 0 0 0 0 0 0 0 0 0 0 0 0 33351 3794 35060 174873;174874;174875 176740;176741;176742 176742 3 TLADIIMEK RAIEMFMNKNPPARRTLADIIMEKLTEKQT NPPARRTLADIIMEKLTEKQTEVETVMSEV R T L E K L 1 0 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 0 0 0 0 9 0 1032.5525 Q13895;H7BY94 Q13895 146 154 BYSL Bystin yes no 2 0.0066328 53.968 By matching By MS/MS By matching 1 2 1 1.0677 0.97201 34.991 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92013 0.82072 NaN 1 0 Median 1.4134 1.3987 27.538 2 0 Median 0.9428 0.8098 NaN 1 0 Median 6935900 3110600 3825300 0 0 0 0 0 0 0 0 0 964500 467040 497460 5804000 2560900 3243100 167390 82684 84708 33352 2845 35061 174876;174877;174878;174879 176743 176743 1 TLAEHQQLIPLVEK RRKHNYLPFIMELLKTLAEHQQLIPLVEKA KTLAEHQQLIPLVEKAKEKQNAKKAQETK_ K T L E K A 1 0 0 0 0 2 2 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1617.909 Q5LJA5;Q5LJA9;Q9Y5K5;H0Y6Y4;H0Y4E0;H0Y4K0;H0Y636 Q5LJA5 328 341 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 3 0.0002194 59.709 By MS/MS By matching By matching 1 1 1 1.061 0.92878 27.973 3 Median 0.96864 0.89581 NaN 1 0 Median 1.061 0.92878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7713 1.4793 NaN 1 0 Median 15522000 7195100 8326600 14263000 6649000 7613600 688880 334210 354670 0 0 0 0 0 0 0 0 0 570150 211860 358290 33353 3064 35062 174880;174881;174882 176744 176744 1 TLAEIAKVELDNMPLR IHKDKGFGFIRLETRTLAEIAKVELDNMPL LAEIAKVELDNMPLRGKQLRVRFACHSASL R T L L R G 2 1 1 1 0 0 2 0 0 1 3 1 1 0 1 0 1 0 0 1 0 0 16 1 1811.9815 Q15233;C9JYS8;C9IZL7;C9J4X2 Q15233 120 135 NONO Non-POU domain-containing octamer-binding protein yes no 2;3 0.00054627 68.069 By matching By MS/MS 2 2 0.80597 0.86568 11.709 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7431 0.82272 12.782 2 0 Median NaN NaN NaN 0 0 Median 0.87433 0.90775 12.295 2 0 Median NaN NaN NaN 0 0 Median 5957900 3016200 2941700 0 0 0 0 0 0 1753400 849960 903460 0 0 0 4204500 2166200 2038300 0 0 0 33354 2935 35063 174883;174884;174885;174886 176745;176746;176747;176748 176747 4 TLAEINANR QIAVPRNDEWARFGRTLAEINANRADAEEE WARFGRTLAEINANRADAEEEAATRIPA__ R T L N R A 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1000.5302 Q13409 Q13409 617 625 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes yes 2 0.00058663 111.82 By MS/MS By MS/MS By MS/MS By matching 3 1 1 1 1.0665 0.97857 15.856 6 Median 0.94778 0.93357 5.0615 3 0 Median 1.2018 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1308 0.9745 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7671 1.388 NaN 1 0 Median 14277000 6468700 7808200 4064800 2040300 2024500 5525200 2344600 3180600 0 0 0 4235300 1906600 2328700 0 0 0 451600 177220 274390 33355 2811 35064 174887;174888;174889;174890;174891;174892 176749;176750;176751;176752;176753 176751 5 TLAEINANRADAEEEAATR QIAVPRNDEWARFGRTLAEINANRADAEEE INANRADAEEEAATRIPA____________ R T L T R I 6 2 2 1 0 0 4 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 19 1 2043.9821 Q13409 Q13409 617 635 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 yes yes 3 1.2393E-18 114.55 By MS/MS By matching 1 1 1.1315 1.0893 8.6398 2 Median 0.9995 1.0248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2809 1.158 NaN 1 0 Median 23706000 11558000 12149000 22684000 11164000 11520000 0 0 0 0 0 0 0 0 0 0 0 0 1021800 393360 628440 33356 2811 35065 174893;174894 176754 176754 1 TLAESALQLLYTAK TLSHPQQMALLDQTKTLAESALQLLYTAKE KTLAESALQLLYTAKEAGGNPKQAAHTQEA K T L A K E 3 0 0 0 0 1 1 0 0 0 4 1 0 0 0 1 2 0 1 0 0 0 14 0 1520.845 Q9Y490 Q9Y490 1767 1780 TLN1 Talin-1 yes yes 2 0.00023138 76.655 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.244 1.1164 17.19 4 Median 1.0561 1.0173 NaN 1 0 Median 1.22 1.0836 NaN 1 0 Median 1.3499 1.5038 NaN 1 0 Median 1.2686 1.1502 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26701000 12488000 14213000 18598000 8984200 9614200 2823300 1330800 1492500 4662400 1920700 2741700 616930 251870 365060 0 0 0 0 0 0 33357 4441 35066 174895;174896;174897;174898 176755;176756;176757;176758;176759 176756 5 TLAESDEGKLHVLR SHSFSALAKFHEVFKTLAESDEGKLHVLRV KTLAESDEGKLHVLRVMFEVWRNHPQMIAV K T L L R V 1 1 0 1 0 0 2 1 1 0 3 1 0 0 0 1 1 0 0 1 0 0 14 1 1566.8366 Q09161 Q09161 575 588 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 3 5.2246E-08 112.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.0339 1.0789 16.894 8 Median 1.1324 1.1614 2.5986 2 2 Median NaN NaN NaN 0 0 Median 0.91373 1.0035 2.4262 2 0 Median 1.3473 1.2768 NaN 1 0 Median 0.87248 0.95998 NaN 1 1 Median 1.1016 0.97157 34.091 2 1 Median 47750000 23815000 23935000 9539800 4460600 5079300 0 0 0 11216000 5630900 5585600 2026400 1054400 971960 22096000 11550000 10546000 2871500 1119000 1752500 33358 2747 35067 174899;174900;174901;174902;174903;174904;174905;174906 176760;176761;176762;176763;176764;176765;176766;176767 176765 8 TLAFPLTIR LLQFHGLVRLVHQERTLAFPLTIRCFLGCE LVHQERTLAFPLTIRCFLGCELPPEGSRAH R T L I R C 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 2 0 0 0 0 0 9 0 1030.6175 Q9UNN8;A0A0U1RQQ4 Q9UNN8 105 113 PROCR Endothelial protein C receptor yes no 2 0.0028118 69.423 By MS/MS By matching By MS/MS 2 1 1 1.2435 1.1566 27.308 4 Median 1.1763 1.1566 14.365 2 0 Median 1.1781 1.0255 NaN 1 0 Median 1.7039 1.8463 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16826000 7290900 9535400 6484900 3071300 3413600 5794900 2606600 3188300 4546500 1613000 2933500 0 0 0 0 0 0 0 0 0 33359 4346 35068 174907;174908;174909;174910 176768;176769;176770 176768 3 TLAFSIPILMQLK HGRELLASAPTGSGKTLAFSIPILMQLKQP GKTLAFSIPILMQLKQPANKGFRALIISPT K T L L K Q 1 0 0 0 0 1 0 0 0 2 3 1 1 1 1 1 1 0 0 0 0 0 13 0 1473.8629 Q9Y2R4 Q9Y2R4 216 228 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2 0.027199 27.115 By matching By MS/MS 1 1 1.0111 1.0241 0.14935 2 Median 1.0608 1.023 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96368 1.0252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3411700 1662000 1749700 372320 185800 186520 0 0 0 3039400 1476200 1563200 0 0 0 0 0 0 0 0 0 33360 4389 35069 174911;174912 176771;176772 176771 2 TLAFTSVDLTNK GEDIVITAHVLKQGKTLAFTSVDLTNKATG QGKTLAFTSVDLTNKATGKLIAQGRHTKHL K T L N K A 1 0 1 1 0 0 0 0 0 0 2 1 0 1 0 1 3 0 0 1 0 0 12 0 1308.6925 Q9NPJ3 Q9NPJ3 112 123 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes yes 2 3.9932E-06 119.16 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1097 1.044 14.592 5 Median 1.101 1.0157 3.8762 2 0 Median 1.6346 1.3432 NaN 1 0 Median 1.0719 1.0165 NaN 1 0 Median 1.6149 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128270000 57156000 71110000 59153000 28053000 31100000 24991000 9511200 15480000 37872000 17119000 20753000 6250800 2473300 3777400 0 0 0 0 0 0 33361 4055 35070 174913;174914;174915;174916;174917 176773;176774;176775;176776;176777;176778;176779;176780;176781 176778 9 TLAGDVHIVR CTGNLCTKESYDYLKTLAGDVHIVRGDFDE YDYLKTLAGDVHIVRGDFDENLNYPEQKVV K T L V R G 1 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1079.6087 F8VXU5;Q9UBQ0 F8VXU5 83 92 VPS29 Vacuolar protein sorting-associated protein 29 yes no 2 0.00039551 113.71 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.0977 1.0465 7.0278 5 Linear 1.0822 1.0342 7.1784 2 0 Median 1.1282 0.93523 NaN 1 0 Median 0.97669 0.93818 NaN 1 0 Median 1.0977 0.91102 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94026000 44374000 49653000 61528000 28630000 32898000 9810200 4658100 5152100 17966000 8820600 9145900 4721900 2265300 2456600 0 0 0 0 0 0 33362 1073 35071 174918;174919;174920;174921;174922;174923 176782;176783;176784;176785;176786;176787;176788;176789;176790;176791 176783 10 TLAGGPMISIYDAETEQLR SFQDRGPEEQLRAARTLAGGPMISIYDAET GPMISIYDAETEQLRIGPYSWTPFPHVDFW R T L L R I 2 1 0 1 0 1 2 2 0 2 2 0 1 0 1 1 2 0 1 0 0 0 19 0 2064.0198 Q96AB6;H3BNJ5;H3BPN7;A0A087X0T5 Q96AB6 208 226 NTAN1 Protein N-terminal asparagine amidohydrolase yes no 2 0.037961 21.557 By MS/MS By matching 2 1 0.86626 0.92737 13.966 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78064 0.8217 17.109 2 0 Median NaN NaN NaN 0 0 Median 0.87449 0.92727 NaN 1 0 Median NaN NaN NaN 0 0 Median 3245500 1490600 1754900 0 0 0 0 0 0 2572700 1203000 1369700 0 0 0 672810 287570 385240 0 0 0 33363 3598 35072 174924;174925;174926 176792 176792 1 TLAHFRPIEDNEK FPEGEDQVNFRGFMRTLAHFRPIEDNEKSK MRTLAHFRPIEDNEKSKDVNGPEPLNSRSN R T L E K S 1 1 1 1 0 0 2 0 1 1 1 1 0 1 1 0 1 0 0 0 0 0 13 1 1568.7947 Q99653;H0YKE7;F5GX29;H0YNG9;H0YLY7 Q99653 86 98 CHP1 Calcineurin B homologous protein 1 yes no 3 0.00053924 50.563 By MS/MS By MS/MS 1 1 1.0395 1.0253 6.42 2 Median 0.93628 0.9798 NaN 1 0 Median 1.154 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11433000 5369100 6064400 7414900 3459000 3956000 4018500 1910100 2108400 0 0 0 0 0 0 0 0 0 0 0 0 33364 3760 35073 174927;174928 176793;176794 176794 2 TLAIELAPR SPYNVSKTALLGLTKTLAIELAPRNIRVNC LLGLTKTLAIELAPRNIRVNCLAPGLIKTS K T L P R N 2 1 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 9 0 982.58113 Q9BTZ2;P0CG22 Q9BTZ2 195 203 DHRS4;DHRS4L1 Dehydrogenase/reductase SDR family member 4;Putative dehydrogenase/reductase SDR family member 4-like 1 yes no 2 0.0025104 71.501 By MS/MS By MS/MS By matching 2 1 1 1.1292 1.0187 43.61 4 Median 0.76682 0.72835 22.932 2 0 Median 1.4234 1.2116 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0853 1.701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9379700 4893800 4485900 8007700 4338600 3669100 1121000 469620 651420 0 0 0 251010 85557 165450 0 0 0 0 0 0 33365 3832 35074 174929;174930;174931;174932 176795;176796;176797;176798 176796 4 TLAKEVWQEK RTIPPELQEQLKTVKTLAKEVWQEKAKVER LKTVKTLAKEVWQEKAKVERLQRILEGEGN K T L E K A 1 0 0 0 0 1 2 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 10 1 1230.6608 A0A1B0GW36;Q9H0J4 A0A1B0GW36 1255 1264 QRICH2 Glutamine-rich protein 2 no no 3 0.060161 24.855 By MS/MS 1 14.095 15.786 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14.095 15.786 NaN 1 1 Median NaN NaN NaN 0 0 Median 8088900 1329500 6759500 0 0 0 0 0 0 0 0 0 0 0 0 8088900 1329500 6759500 0 0 0 33366 327 35075 174933 176799 176799 1 TLALQQQLQAVR ARERLEQELALEERRTLALQQQLQAVRQAL ERRTLALQQQLQAVRQALTASFASLPVPGT R T L V R Q 2 1 0 0 0 4 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 12 0 1367.7885 Q9P0W2;B5MDG7;K7EJR8 Q9P0W2 245 256 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes no 2 5.6376E-06 161.37 By MS/MS By MS/MS By matching 1 1 1 1.3387 1.1973 31.115 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80593 0.78494 NaN 1 0 Median 1.3557 1.1973 NaN 1 0 Median 1.3387 1.4403 NaN 1 0 Median NaN NaN NaN 0 0 Median 16368000 8793700 7574000 0 0 0 0 0 0 12834000 7028300 5806100 1606400 731750 874600 1927000 1033700 893320 0 0 0 33367 4210 35076 174934;174935;174936 176800;176801;176802;176803 176801 4 TLAMDTILANAR FNEPGSSLVSRTRVKTLAMDTILANARFFD RVKTLAMDTILANARFFDGELTKVPTMALT K T L A R F 3 1 1 1 0 0 0 0 0 1 2 0 1 0 0 0 2 0 0 0 0 0 12 0 1288.6809 P46926;D6RFF8;D6RAY7;D6R9P4 P46926 161 172 GNPDA1 Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase yes no 2 0.00011369 154.56 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.3699 1.1609 86.955 5 Median 1.3079 1.2531 10.094 2 0 Median 1.3785 1.1465 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3789 1.1609 NaN 1 0 Median 0.16417 0.17298 NaN 1 0 Median NaN NaN NaN 0 0 Median 60698000 26512000 34186000 50138000 21751000 28387000 9021800 3643900 5377900 0 0 0 268980 135480 133500 1268900 981980 286910 0 0 0 33368 2348 35077 174937;174938;174939;174940;174941 176804;176805;176806;176807 176806 2 TLAPTWEELSK ITFIKFYAPWCGHCKTLAPTWEELSKKEFP GHCKTLAPTWEELSKKEFPGLAGVKIAEVD K T L S K K 1 0 0 0 0 0 2 0 0 0 2 1 0 0 1 1 2 1 0 0 0 0 11 0 1273.6554 Q8NBS9 Q8NBS9 355 365 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.0050537 67.726 By MS/MS 1 2.8349 2.7266 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.8349 2.7266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20361000 5444100 14917000 0 0 0 0 0 0 20361000 5444100 14917000 0 0 0 0 0 0 0 0 0 33369 3410 35078 174942 176808 176808 1 TLAPTWEELSKK ITFIKFYAPWCGHCKTLAPTWEELSKKEFP HCKTLAPTWEELSKKEFPGLAGVKIAEVDC K T L K K E 1 0 0 0 0 0 2 0 0 0 2 2 0 0 1 1 2 1 0 0 0 0 12 1 1401.7504 Q8NBS9 Q8NBS9 355 366 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 3 0.025772 27.409 By MS/MS 1 1.0245 0.97958 NaN 1 Median 1.0245 0.97958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9883300 3214900 6668400 9883300 3214900 6668400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33370 3410 35079 174943 176809 176809 0 TLAQLNPESSLFIIASK RVWYVSNIDGTHIAKTLAQLNPESSLFIIA AQLNPESSLFIIASKTFTTQETITNAETAK K T L S K T 2 0 1 0 0 1 1 0 0 2 3 1 0 1 1 3 1 0 0 0 0 0 17 0 1831.0091 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90 P06744 195 211 GPI Glucose-6-phosphate isomerase yes no 2 1.9887E-10 102.87 By MS/MS By MS/MS By MS/MS By matching By matching 6 4 1 1 1 0.93414 0.89827 41.44 13 Median 0.93371 0.90188 8.9277 6 0 Median 0.92973 0.80366 68.057 4 0 Median 0.94026 0.90703 NaN 1 0 Median 1.0181 0.88779 NaN 1 0 Median 1.7962 1.9653 NaN 1 0 Median NaN NaN NaN 0 0 Median 115620000 58469000 57148000 49929000 24927000 25002000 20963000 10352000 10612000 43889000 22835000 21054000 560130 279300 280830 276300 76197 200100 0 0 0 33371 1875 35080 174944;174945;174946;174947;174948;174949;174950;174951;174952;174953;174954;174955;174956 176810;176811;176812;176813;176814;176815;176816;176817;176818;176819 176818 10 TLASAGGPDNLVLLNPEK YYIHNLVVACEIQVRTLASAGGPDNLVLLN SAGGPDNLVLLNPEKYKAKSRSPGSPVGEG R T L E K Y 2 0 2 1 0 0 1 2 0 0 4 1 0 0 2 1 1 0 0 1 0 0 18 0 1807.968 E7EV99;E7ENY0;P35611;A0A0A0MSR2;H0Y9H2 E7EV99 331 348 ADD1 Alpha-adducin yes no 2 2.3595E-11 106.49 By MS/MS By MS/MS By matching By MS/MS By matching 1 4 3 1 1 0.77214 0.69573 35.055 10 Median 0.77735 0.7631 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63425 0.65992 55.842 4 0 Median 0.83813 0.72744 21.111 3 0 Median 0.56285 0.58086 NaN 1 0 Median 0.86002 0.72765 NaN 1 0 Median 41615000 23646000 17969000 4053100 2326400 1726700 0 0 0 32075000 18204000 13870000 2901300 1526300 1375000 2357600 1482100 875480 227740 106700 121050 33372 866 35081 174957;174958;174959;174960;174961;174962;174963;174964;174965;174966 176820;176821;176822;176823;176824;176825;176826;176827;176828;176829;176830 176821 11 TLATDILMGVLK LERYGVIILDEAHERTLATDILMGVLKEVV HERTLATDILMGVLKEVVRQRSDLKVIVMS R T L L K E 1 0 0 1 0 0 0 1 0 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1273.7316 O43143 O43143 266 277 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0034263 46.158 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 3 3 1 2 3 1.162 1.1025 13.605 14 Median 1.2176 1.2002 9.3412 2 0 Median 1.1521 1.0104 1.215 3 0 Plateau 1.1335 1.2251 9.6762 3 0 Median 0.94661 0.85043 NaN 1 0 Median 1.2005 1.2344 6.8931 2 0 Median 1.2285 1.0226 4.0155 3 0 Median 167010000 77167000 89840000 4011900 1797900 2214000 117580000 54217000 63366000 18518000 8455200 10063000 48121 23605 24515 25176000 11957000 13219000 1670100 716220 953840 33373 1553 35082 174967;174968;174969;174970;174971;174972;174973;174974;174975;174976;174977;174978;174979;174980 176831;176832;176833 176831 3 TLATLSENNMEAK AEWQPGETLRGTAERTLATLSENNMEAKFL ERTLATLSENNMEAKFLGNAPCGHYTFKFP R T L A K F 2 0 2 0 0 0 2 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 13 0 1420.6868 Q9H2W6 Q9H2W6 191 203 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 4.3111E-07 155.11 By MS/MS By MS/MS By MS/MS 2 1 1 1.1388 1.0611 24.328 4 Median 1.0049 0.93154 28.489 2 0 Median 1.6165 1.3538 NaN 1 0 Median 1.0541 0.98812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50971000 25340000 25631000 31295000 16794000 14501000 9272200 3607700 5664400 10404000 4938100 5465900 0 0 0 0 0 0 0 0 0 33374 3948 35083 174981;174982;174983;174984 176834;176835;176836;176837;176838;176839;176840 176839 7 TLATTLAPR GSASQANIRLTSLKKTLATTLAPRVLLPAI LTSLKKTLATTLAPRVLLPAIKKTYKQIEK K T L P R V 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 3 0 0 0 0 0 9 0 942.54983 Q9H583;Q5T3Q7 Q9H583 1812 1820 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0054443 71.501 By MS/MS By MS/MS By MS/MS 1 1 1 0.54641 0.56948 67.236 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8302 0.92061 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.54641 0.56948 NaN 1 1 Median 0.29554 0.24399 NaN 1 1 Median 22482000 15167000 7315100 0 0 0 0 0 0 3303000 1654300 1648700 0 0 0 5775000 3690300 2084700 13404000 9822400 3581700 33375 3086 35084 174985;174986;174987 176841;176842;176843 176841 3 TLATWATK ELLTEGRRSKTNKAKTLATWATKELRKLKN SKTNKAKTLATWATKELRKLKNQA______ K T L T K E 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 8 0 890.48617 Q14974;J3KTM9;J3KS06 Q14974 860 867 KPNB1 Importin subunit beta-1 yes no 2 0.0024981 107.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 1 1 3 1.166 1.1341 13.738 14 Median 1.0754 1.0047 0.97265 2 0 Median 1.1822 1.0243 14.692 4 0 Median 1.2614 1.3405 5.9392 3 0 Median 1.396 1.2082 NaN 1 0 Median 1.1643 1.2002 NaN 1 0 Median 1.1677 0.96393 9.9929 3 0 Median 97539000 44152000 53386000 24260000 10931000 13329000 21714000 9312000 12402000 29559000 13584000 15975000 9436500 4194400 5242100 5645800 3080100 2565700 6924200 3051600 3872500 33376 2904 35085 174988;174989;174990;174991;174992;174993;174994;174995;174996;174997;174998;174999;175000;175001 176844;176845;176846;176847;176848;176849;176850;176851;176852;176853;176854;176855;176856;176857;176858;176859;176860 176846 17 TLAVSGLGVVGR STECTLILTEGDSAKTLAVSGLGVVGRDKY SAKTLAVSGLGVVGRDKYGVFPLRGKILNV K T L G R D 1 1 0 0 0 0 0 3 0 0 2 0 0 0 0 1 1 0 0 3 0 0 12 0 1127.6663 P11388 P11388 467 478 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.6052E-05 145.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 5 1.3161 1.1075 14.793 11 Median 0.84939 0.84423 NaN 1 0 Median 1.3654 1.1636 NaN 1 0 Median 1.0639 1.1648 0.6835 2 0 Median 1.6866 1.4862 NaN 1 0 Median 1.3161 1.325 NaN 1 0 Median 1.3383 1.084 5.6562 5 0 Median 168120000 72999000 95121000 2471100 811190 1659900 3843500 1647700 2195800 56106000 27744000 28362000 6762500 2312100 4450300 81248000 32938000 48310000 17689000 7545300 10144000 33377 1963 35086 175002;175003;175004;175005;175006;175007;175008;175009;175010;175011;175012;175013 176861;176862;176863;176864;176865;176866;176867;176868;176869;176870;176871;176872 176864 12 TLAYLLPAIVHINHQPYLER SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ LPAIVHINHQPYLERGDGPICLVLAPTREL K T L E R G 2 1 1 0 0 1 1 0 2 2 4 0 0 0 2 0 1 0 2 1 0 0 20 0 2360.3005 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 222 241 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3;4 1.0219E-25 170.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 6 6 4 5 0.82142 0.75277 18.246 26 Median 0.73741 0.71054 NaN 1 0 Median 0.87842 0.75957 22.073 4 0 Median 0.65712 0.65891 20.519 6 0 Median 1.1131 0.86223 13.003 6 0 Plateau 0.72502 0.73185 11.034 4 0 Median 0.86628 0.69643 21.875 5 0 Median 428200000 235890000 192310000 4099600 2355000 1744600 38542000 20314000 18229000 313180000 174820000 138360000 13616000 7085300 6530600 35941000 20766000 15174000 22828000 10557000 12271000 33378 343 35087 175014;175015;175016;175017;175018;175019;175020;175021;175022;175023;175024;175025;175026;175027;175028;175029;175030;175031;175032;175033;175034;175035;175036;175037;175038;175039 176873;176874;176875;176876;176877;176878;176879;176880;176881;176882;176883;176884;176885;176886;176887;176888;176889;176890;176891;176892;176893;176894;176895;176896;176897;176898;176899;176900;176901;176902;176903;176904;176905;176906;176907 176877 35 TLDAIELYR SLLARYASHLLEKNKTLDAIELYRKANYFF LLEKNKTLDAIELYRKANYFFDAAKLMFKI K T L Y R K 1 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1092.5815 Q9P2L0 Q9P2L0 930 938 WDR35 WD repeat-containing protein 35 yes yes 2 0.0070414 52.716 By matching By MS/MS By matching 2 1 1 0.66005 0.67855 39.807 4 Median 0.99652 0.97371 58.709 2 0 Median NaN NaN NaN 0 0 Median 0.61525 0.68636 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6537 0.67082 NaN 1 0 Median NaN NaN NaN 0 0 Median 7119700 3657400 3462300 4264600 1855000 2409600 0 0 0 1935900 1229400 706470 0 0 0 919210 572960 346250 0 0 0 33379 4225 35088 175040;175041;175042;175043 176908 176908 1 TLDAMAFNK IDTSRHYLPVKIILKTLDAMAFNKFNVLHW VKIILKTLDAMAFNKFNVLHWHIVDDQSFP K T L N K F 2 0 1 1 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 9 0 1009.4903 P07686 P07686 222 230 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 2 0.0022072 87.323 By MS/MS By MS/MS 1 1 1.0653 0.94271 21.177 2 Median 0.87467 0.8116 NaN 1 1 Median 1.2974 1.095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24164000 12306000 11858000 20985000 10907000 10079000 3178800 1399600 1779200 0 0 0 0 0 0 0 0 0 0 0 0 33380 1888 35089 175044;175045 176909;176910 176909 2 TLDDLFPLR VKDIRAFDSRFSNIKTLDDLFPLRSMVFML RFSNIKTLDDLFPLRSMVFMLGTPYYGCTG K T L L R S 0 1 0 2 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 0 0 0 9 0 1088.5866 Q8IZH2;H7C5E4 Q8IZH2 848 856 XRN1 5-3 exoribonuclease 1 yes no 2 0.035824 34.808 By MS/MS By matching By matching 1 1 1 1.0625 1.0674 12.777 3 Median 1.0625 1.0674 NaN 1 0 Median 0.96907 0.86211 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2488 1.0832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1822300 840420 981870 1472000 653060 818940 239460 137280 102180 0 0 0 110830 50076 60751 0 0 0 0 0 0 33381 3350 35090 175046;175047;175048 176911 176911 1 TLDELGIHLTK ILAQVVGDVDTSLPRTLDELGIHLTKEELK SLPRTLDELGIHLTKEELKLNIRPLLRLVC R T L T K E 0 0 0 1 0 0 1 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1238.6871 Q15029 Q15029 395 405 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 0.00041805 70.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 5 2 1 1 1.2549 1.1207 16.94 15 Median 1.3592 1.3373 9.4336 2 0 Median 1.4056 1.2296 14.483 4 0 Median 0.93425 1.0186 21.22 5 0 Median 1.2739 1.0877 4.2265 2 0 Median 1.2203 1.2619 NaN 1 0 Median 1.3362 1.1045 NaN 1 0 Median 56262000 25067000 31195000 7562800 2903400 4659300 12777000 4910200 7867200 22908000 11377000 11531000 7335300 3282400 4052900 4211700 2034500 2177200 1466600 559320 907290 33382 2917 35091 175049;175050;175051;175052;175053;175054;175055;175056;175057;175058;175059;175060;175061;175062;175063 176912;176913;176914;176915;176916;176917;176918;176919;176920;176921;176922 176915 11 TLDELGIHLTKEELK ILAQVVGDVDTSLPRTLDELGIHLTKEELK TLDELGIHLTKEELKLNIRPLLRLVCKKFF R T L L K L 0 0 0 1 0 0 3 1 1 1 4 2 0 0 0 0 2 0 0 0 0 0 15 1 1737.9513 Q15029 Q15029 395 409 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3 0.037509 25.59 By MS/MS 1 0.98075 1.0977 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98075 1.0977 NaN 1 1 Median NaN NaN NaN 0 0 Median 16366000 8425700 7939800 0 0 0 0 0 0 0 0 0 0 0 0 16366000 8425700 7939800 0 0 0 33383 2917 35092 175064 176923 176923 1 TLDELSQGTTTVK VSARDLFRAQLISRKTLDELSQGTTTVKEV RKTLDELSQGTTTVKEVAEMDSVKRSLEGG K T L V K E 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 4 0 0 1 0 0 13 0 1391.7144 P58107;A0A075B730 P58107 1543 1555 EPPK1 Epiplakin yes no 2 2.0706E-30 172.27 By MS/MS By MS/MS 1 2 1.3391 1.2752 7.8552 3 Median 1.2727 1.2752 NaN 1 1 Median 1.4535 1.2898 11.07 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33940000 14989000 18951000 12102000 5522500 6579200 21838000 9466300 12372000 0 0 0 0 0 0 0 0 0 0 0 0 33384 2520 35093 175065;175066;175067 176924;176925;176926 176924 3 TLDGFKK PASADRTVIDYNGERTLDGFKKFLESGGQD VIDYNGERTLDGFKKFLESGGQDGAGDDDD R T L K K F 0 0 0 1 0 0 0 1 0 0 1 2 0 1 0 0 1 0 0 0 0 0 7 1 807.44905 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 462 468 P4HB Protein disulfide-isomerase yes no 2 0.024746 65.803 By matching By MS/MS By matching By matching 2 2 1 1 1.3443 1.2859 14.253 6 Median 1.2555 1.202 8.341 2 0 Median 1.4963 1.4031 11.903 2 0 Median 1.209 1.282 NaN 1 0 Median 1.6808 1.6801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15295000 6252000 9042900 5979800 2663500 3316300 8998100 3455100 5543000 257930 112410 145520 59061 20927 38135 0 0 0 0 0 0 33385 1883 35094 175068;175069;175070;175071;175072;175073 176927;176928 176927 2 TLDGGLNVIQLETAVGAAIK QEQNAIDMEIIVNAKTLDGGLNVIQLETAV LNVIQLETAVGAAIKSFENSLGINVPRSRF K T L I K S 3 0 1 1 0 1 1 3 0 2 3 1 0 0 0 0 2 0 0 2 0 0 20 0 1982.1048 A0A087WYS1;E7EUC7;Q16851 A0A087WYS1 358 377 UGP2 UTP--glucose-1-phosphate uridylyltransferase yes no 2 4.9886E-05 39.661 By MS/MS 1 1.1705 1.0093 NaN 1 Median NaN NaN NaN 0 0 Median 1.1705 1.0093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1652600 752650 899910 0 0 0 1652600 752650 899910 0 0 0 0 0 0 0 0 0 0 0 0 33386 86 35095 175074 176929 176929 1 TLDGIFSEQVAMGYSHSLVIAR GDHKPKSSTAAQEVKTLDGIFSEQVAMGYS EQVAMGYSHSLVIARDESETEKEKIKKLPE K T L A R D 2 1 0 1 0 1 1 2 1 2 2 0 1 1 0 3 1 0 1 2 0 0 22 0 2393.2049 Q9P258 Q9P258 480 501 RCC2 Protein RCC2 yes yes 3 1.7728E-09 56.055 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 1.1276 1.0071 37.895 6 Median 2.4315 2.3865 NaN 1 0 Median 1.1902 1.0379 NaN 1 0 Median 0.94414 0.95692 18.407 2 0 Median 1.1387 0.97733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1166 0.9213 NaN 1 0 Median 23933000 11176000 12757000 3983400 1615500 2368000 1033700 421800 611930 16087000 7816100 8271000 2599600 1199400 1400200 0 0 0 229390 123560 105830 33387 4214 35096;35097 175075;175076;175077;175078;175079;175080 176930;176931;176932 176931 1901 3 TLDLLTMK HVCLYFISPTGHSLKTLDLLTMKNLDSKVN PTGHSLKTLDLLTMKNLDSKVNIIPVIAKA K T L M K N 0 0 0 1 0 0 0 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 8 0 933.5205 E7EW69;B5ME97;Q9P0V9;E7EX04 E7EW69 188 195 SEPT10 Septin-10 yes no 2 0.0052175 77.058 By MS/MS By matching 2 2 1.031 0.97151 5.8108 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97135 0.97151 0.6518 2 0 Median 1.1282 0.992 9.8242 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8932700 4291100 4641600 0 0 0 0 0 0 7764600 3754900 4009600 1168200 536220 631960 0 0 0 0 0 0 33388 626 35098 175081;175082;175083;175084 176933;176934;176935 176935 3 TLDLPIYVTR HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN HGIIRTLDLPIYVTRVKGNNVYCLDRECRP R T L T R V 0 1 0 1 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1189.6707 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 563 572 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00064301 72.607 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.0518 0.9087 15.014 7 Median 0.93376 0.9087 2.9891 3 1 Median 1.2345 1.0411 22.987 2 0 Median 1.1181 1.2284 NaN 1 0 Median 1.0518 0.89539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51597000 25661000 25935000 33382000 16936000 16446000 12521000 6004800 6515900 3385100 1621400 1763600 2308800 1098900 1209800 0 0 0 0 0 0 33389 2473 35099 175085;175086;175087;175088;175089;175090;175091;175092 176936;176937;176938;176939;176940;176941;176942;176943;176944;176945 176937 10 TLDMIKK QHKLLKVIRKKLVRKTLDMIKKIADDKYND IRKKLVRKTLDMIKKIADDKYNDTFWKEFG K T L K K I 0 0 0 1 0 0 0 0 0 1 1 2 1 0 0 0 1 0 0 0 0 0 7 1 847.48372 P14625;Q58FF3 P14625 468 474 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein yes no 2 0.0099475 90.986 By MS/MS By MS/MS 1 1 1.2248 1.2377 21.406 2 Median 1.0091 1.0639 NaN 1 1 Median 1.4867 1.44 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15414000 6390800 9022800 3624500 1842100 1782400 11789000 4548700 7240400 0 0 0 0 0 0 0 0 0 0 0 0 33390 2006 35100 175093;175094 176946;176947;176948;176949 176948 4 TLDNLGYR QKWKVGEIEFEGLMRTLDNLGYRTGYAYRH EFEGLMRTLDNLGYRTGYAYRHPLIREKPR R T L Y R T 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 950.48214 Q9UEY8 Q9UEY8 377 384 ADD3 Gamma-adducin yes yes 2 0.0023413 113.89 By matching By MS/MS By matching 1 1 1 0.74583 0.75752 33.974 3 Median 0.56981 0.5625 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74583 0.75752 NaN 1 0 Median 1.2858 1.1079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18665000 10702000 7962300 2142500 1356400 786130 0 0 0 14507000 8493100 6014300 2014600 852640 1161900 0 0 0 0 0 0 33391 4257 35101 175095;175096;175097 176950 176950 1 TLDNLNPDVR ANSVTPAVSVNNEVRTLDNLNPDVRLILEE NNEVRTLDNLNPDVRLILEEITRFLNMEKL R T L V R L 0 1 2 2 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1155.5884 Q6P1X5;H0YB55 Q6P1X5 818 827 TAF2 Transcription initiation factor TFIID subunit 2 yes no 2 0.00040021 101.64 By matching By MS/MS By MS/MS 1 1 1 0.80659 0.81419 14.758 2 Median 0.93586 0.90374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69519 0.73351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18069000 9086600 8982200 7034700 3621000 3413700 0 0 0 11034000 5465600 5568500 0 0 0 0 0 0 0 0 0 33392 3154 35102 175098;175099;175100 176951;176952 176951 2 TLDNVAIVEEEKMEAVPDVER KFLDDIKKLQENLKKTLDNVAIVEEEKMEA IVEEEKMEAVPDVERKEDKPEGQSPVKAEW K T L E R K 2 1 1 2 0 0 5 0 0 1 1 1 1 0 1 0 1 0 0 4 0 0 21 1 2385.1734 Q9C0C9;K7ES11 Q9C0C9 867 887 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 3 1.4812E-17 99.059 By MS/MS 1 1.1872 1.1951 NaN 1 Median 1.1872 1.1951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7934800 3823600 4111100 7934800 3823600 4111100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33393 3904 35103 175101 176953;176954 176953 2 TLDPDPAIR LSDANLQTLTEYLKKTLDPDPAIRRPAEKF TEYLKKTLDPDPAIRRPAEKFLESVEGNQN K T L I R R 1 1 0 2 0 0 0 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 9 0 996.52401 P55060 P55060 18 26 CSE1L Exportin-2 yes yes 2 0.00060862 109.86 By MS/MS By MS/MS By MS/MS 1 2 1 0.82729 0.73839 4.2069 4 Median 0.7625 0.73382 NaN 1 0 Median 0.9003 0.76145 3.4724 2 0 Median 0.65815 0.70462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61430000 33159000 28270000 20796000 11232000 9563900 38181000 20510000 17672000 2452100 1417400 1034800 0 0 0 0 0 0 0 0 0 33394 2493 35104 175102;175103;175104;175105 176955;176956;176957;176958;176959;176960;176961;176962;176963;176964 176956 10 TLDQAIMK RTTELVNKDLDIYYKTLDQAIMKFHSMKME DLDIYYKTLDQAIMKFHSMKMEEINKIIRD K T L M K F 1 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 8 0 918.48445 Q92878;A0A1W2PQ90;A0A494BZX8;H7C0V2 Q92878 1127 1134 RAD50 DNA repair protein RAD50 yes no 2 0.0084743 62.717 By MS/MS By MS/MS 1 1 1.2387 1.2189 7.7137 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2039 1.2872 NaN 1 0 Median 1.2746 1.1542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10971000 5100700 5870200 0 0 0 0 0 0 9016500 4245400 4771100 1954400 855340 1099100 0 0 0 0 0 0 33395 3561 35105 175106;175107 176965;176966;176967 176966 3 TLDSWRDEFLIQASPR CCVLVFDVTAPNTFKTLDSWRDEFLIQASP LDSWRDEFLIQASPRDPENFPFVVLGNKID K T L P R D 1 2 0 2 0 1 1 0 0 1 2 0 0 1 1 2 1 1 0 0 0 0 16 1 1932.9694 P51149;C9J592 P51149 98 113 RAB7A Ras-related protein Rab-7a yes no 3 7.9791E-07 86.378 By MS/MS By MS/MS By matching 2 2 1 1.038 1.0855 50.11 5 Median 1.0182 1.0974 1.547 2 0 Median 0.95515 0.81118 28.391 2 0 Median 2.6807 2.6164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37979000 17151000 20828000 25338000 12746000 12592000 5363000 2298600 3064300 7278600 2106700 5171900 0 0 0 0 0 0 0 0 0 33396 2428 35106 175108;175109;175110;175111;175112 176968;176969;176970;176971 176969 4 TLDTFLR YNSPTDKEDYMTDLRTLDTFLRSEEEKQHR EDYMTDLRTLDTFLRSEEEKQHRVKLGSPD R T L L R S 0 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 7 0 864.47052 Q96SK2 Q96SK2 241 247 TMEM209 Transmembrane protein 209 yes yes 2 0.0026796 124.89 By MS/MS 1 1.0338 1.0529 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0338 1.0529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7042900 3036900 4006000 0 0 0 0 0 0 7042900 3036900 4006000 0 0 0 0 0 0 0 0 0 33397 3735 35107 175113 176972 176972 1 TLDVVLEEHLK QFLPLIRLLESKYPRTLDVVLEEHLKEIAD KYPRTLDVVLEEHLKEIADLKKQELFHQFV R T L L K E 0 0 0 1 0 0 2 0 1 0 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1294.7133 Q9H583;Q5T3Q7 Q9H583 439 449 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 3 0.0088585 30.55 By MS/MS By matching 1 1 1.1254 1.2031 6.4731 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1315 1.2594 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1194 1.1493 NaN 1 0 Median NaN NaN NaN 0 0 Median 2657700 1108100 1549600 0 0 0 0 0 0 2148200 873280 1275000 0 0 0 509480 234830 274660 0 0 0 33398 3086 35108 175114;175115 176973;176974 176974 2 TLEDPDLNVR PIDPLLKNCIGDFLKTLEDPDLNVRRVALV GDFLKTLEDPDLNVRRVALVTFNSAAHNKP K T L V R R 0 1 1 2 0 0 1 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 10 0 1170.5881 Q86VP6;A0A0C4DGH5 Q86VP6 1014 1023 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 9.9305E-06 152.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 0.94775 0.87507 6.3733 6 Median 0.91263 0.87742 NaN 1 0 Median 0.98422 0.81567 NaN 1 0 Median 0.84089 0.91172 9.3216 2 0 Median 1.0318 0.87272 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1478 0.93432 NaN 1 0 Median 128220000 66058000 62166000 35611000 17531000 18081000 26234000 12779000 13456000 47193000 26367000 20825000 17945000 8637100 9307900 0 0 0 1240700 743990 496690 33399 3288 35109 175116;175117;175118;175119;175120;175121 176975;176976;176977;176978;176979;176980;176981;176982 176977 8 TLEDPDLNVRR PIDPLLKNCIGDFLKTLEDPDLNVRRVALV DFLKTLEDPDLNVRRVALVTFNSAAHNKPS K T L R R V 0 2 1 2 0 0 1 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 11 1 1326.6892 Q86VP6;A0A0C4DGH5 Q86VP6 1014 1024 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3 2.6715E-05 123.63 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 0.74261 0.90317 33.482 5 Median 0.8505 0.94492 NaN 1 0 Median 0.56785 0.48683 NaN 1 0 Median 0.76801 0.93406 4.7565 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59409 0.53705 NaN 1 1 Median 64052000 34867000 29185000 15133000 8165400 6967200 4492600 2365400 2127100 41152000 22275000 18876000 0 0 0 0 0 0 3275200 2060900 1214300 33400 3288 35110 175122;175123;175124;175125;175126 176983;176984;176985;176986;176987;176988 176985 6 TLEEAIR HIRELNRAYKAEFKKTLEEAIRSDTSGHFQ AYKAEFKKTLEEAIRSDTSGHFQRLLISLS K T L I R S 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 P50995 P50995 321 327 ANXA11 Annexin A11 yes yes 2 0.0096554 83.614 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.2178 1.0787 21.202 6 Median 0.90166 0.89091 NaN 1 1 Median 1.259 1.0787 14.754 2 1 Median 1.2866 1.3557 NaN 1 0 Median 1.7064 1.4749 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.075 0.92722 NaN 1 0 Median 18524000 8610400 9913700 4328200 2282000 2046200 9491200 4474700 5016500 949760 376850 572910 1002600 401120 601450 0 0 0 2752400 1075700 1676700 33401 2425 35111 175127;175128;175129;175130;175131;175132 176989;176990;176991;176992;176993;176994 176994 6 TLEEAVGNIVK DEFEKEETFTLSTIKTLEEAVGNIVKFLGM STIKTLEEAVGNIVKFLGMHPCERSDKVPD K T L V K F 1 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1171.6449 Q9Y678;H0Y8X7 Q9Y678 796 806 COPG1 Coatomer subunit gamma-1 yes no 2 0.0092274 47.198 By MS/MS By MS/MS By matching By matching By matching 3 2 1 1 1 1.0086 0.92707 16.505 8 Median 1.0135 0.97913 15.565 3 1 Median 1.0718 0.92707 1.9901 2 0 Median 0.66494 0.6782 NaN 1 0 Median 0.93638 0.8141 NaN 1 0 Median 1.0037 1.0719 NaN 1 0 Median NaN NaN NaN 0 0 Median 40057000 19785000 20272000 21062000 10068000 10994000 11002000 5132300 5869200 6767300 3985800 2781500 785960 394070 391890 440190 204690 235500 0 0 0 33402 4481 35112 175133;175134;175135;175136;175137;175138;175139;175140 176995;176996;176997 176995 3 TLEEDEEELFK PQFEPIVSLPEQEIKTLEEDEEELFKMRAK QEIKTLEEDEEELFKMRAKLFRFASENDLP K T L F K M 0 0 0 1 0 0 5 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1380.6297 F6WQW2;P43487;C9JJ34;C9JDM3 F6WQW2 117 127 RANBP1 Ran-specific GTPase-activating protein yes no 2 0.00015911 114.5 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1.1141 0.97425 12.559 9 Median 0.84499 0.80944 10.318 2 0 Median 1.1112 0.93525 5.7784 2 0 Median 1.0877 1.0417 7.358 2 0 Median 1.1553 0.94911 7.9841 2 0 Median NaN NaN NaN 0 0 Median 1.3488 1.135 NaN 1 0 Median 41817000 18405000 23412000 12888000 6140700 6747800 18375000 7479100 10896000 8852400 4078400 4774000 272640 143000 129640 0 0 0 1428000 563360 864630 33403 1052 35113 175141;175142;175143;175144;175145;175146;175147;175148;175149 176998;176999;177000;177001;177002 177002 5 TLEEDVDDRAPSKK GLSEKIFAKPEEQRKTLEEDVDDRAPSKKG KTLEEDVDDRAPSKKGKKRKAQREEEQEHS K T L K K G 1 1 0 3 0 0 2 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 14 2 1601.7897 Q13823 Q13823 642 655 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 0.041717 17.069 By matching By MS/MS 1 1 0.65495 0.73143 19.968 2 Median NaN NaN NaN 0 0 Median 0.6001 0.63512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71481 0.84235 NaN 1 0 Median NaN NaN NaN 0 0 Median 3638900 2071000 1567800 0 0 0 373000 196410 176600 0 0 0 0 0 0 3265900 1874600 1391200 0 0 0 33404 2839 35114 175150;175151 177003 177003 1 TLEEEAKTHEAQIQEMR ELRSKREQEVNILKKTLEEEAKTHEAQIQE EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T L M R Q 2 1 0 0 0 2 5 0 1 1 1 1 1 0 0 0 2 0 0 0 0 0 17 1 2041.9739 P35579 P35579 1175 1191 MYH9 Myosin-9 yes yes 2;3;4 2.6441E-167 311.66 By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 1.1712 1.3015 8.6434 7 Median 1.1933 1.1773 6.0209 3 0 Median 1.1386 1.0809 NaN 1 0 Median 1.1176 1.3396 3.4272 2 0 Median NaN NaN NaN 0 0 Median 1.1712 1.3245 NaN 1 0 Median NaN NaN NaN 0 0 Median 396850000 171890000 224960000 362190000 156400000 205790000 3187300 1434500 1752900 26902000 12119000 14783000 0 0 0 4563900 1928600 2635400 0 0 0 33405 2244 35115 175152;175153;175154;175155;175156;175157;175158 177004;177005;177006;177007;177008;177009;177010;177011;177012;177013;177014;177015;177016;177017;177018;177019 177013 15 TLEEEFAR QELKEWREKLRPRKKTLEEEFARKLQEQEV KLRPRKKTLEEEFARKLQEQEVFFKMTGES K T L A R K 1 1 0 0 0 0 3 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 993.47673 Q9H2G2 Q9H2G2 1188 1195 SLK STE20-like serine/threonine-protein kinase yes yes 2 0.0035542 89.142 By MS/MS By MS/MS 1 1 1.2038 1.0802 8.9052 2 Median 1.0755 1.0143 NaN 1 0 Median 1.3475 1.1504 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11468000 5558100 5910400 7284400 3776700 3507700 4184100 1781400 2402600 0 0 0 0 0 0 0 0 0 0 0 0 33406 3942 35116 175159;175160 177020;177021;177022 177020 3 TLEEGHDFIQEFPGSPAFAALTSIAQK VPFLGSVPLDPALMRTLEEGHDFIQEFPGS PGSPAFAALTSIAQKILDATPACLP_____ R T L Q K I 4 0 0 1 0 2 3 2 1 2 2 1 0 3 2 2 2 0 0 0 0 0 27 0 2903.4341 Q9Y5Y2;H3BQR2;B7Z6P0 Q9Y5Y2 235 261 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes no 3 0.0047208 23.054 By MS/MS 1 0.79248 0.66838 NaN 1 Median NaN NaN NaN 0 0 Median 0.79248 0.66838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3384300 1754000 1630300 0 0 0 3384300 1754000 1630300 0 0 0 0 0 0 0 0 0 0 0 0 33407 4472 35117 175161 177023 177023 1 TLEEILLER DATDKVNKVGEIHVKTLEEILLERASQKRG GEIHVKTLEEILLERASQKRGELQTKLKTE K T L E R A 0 1 0 0 0 0 3 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1114.6234 O75152;E9PQ61;E9PBY7 O75152 360 368 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.00091857 90.657 By matching By MS/MS By MS/MS By matching 1 1 2 2 0.83181 0.8466 37.08 6 Median 0.69485 0.7017 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0524 1.1218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0001 1.0357 1.9595 2 0 Median 0.60366 0.50942 14.212 2 0 Median 17840000 8434900 9404800 591220 306010 285200 0 0 0 5933100 2574100 3359000 0 0 0 10257000 4926000 5331100 1058300 628780 429500 33408 1650 35118 175162;175163;175164;175165;175166;175167 177024;177025;177026;177027;177028;177029 177029 6 TLEEKEQEEAR REQSRFYGDLMEKRRTLEEKEQEEARLRKL EKRRTLEEKEQEEARLRKLRKKEAKQRWDD R T L A R L 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1360.647 Q9BUQ8 Q9BUQ8 329 339 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2;3 0.0030791 65.347 By matching By MS/MS By MS/MS By matching By MS/MS 2 1 4 4 3 1.0127 1.0375 19.913 14 Median 1.0137 1.0373 9.9689 2 0 Median 1.2025 1.156 NaN 1 0 Median 0.8351 0.94986 10.139 4 0 Median 1.1713 1.1257 11.026 4 0 Median 0.9244 1.028 35.857 3 0 Median NaN NaN NaN 0 0 Median 9596800 4916100 4680700 748710 346070 402640 567900 282230 285670 5879400 3126500 2752800 993630 437800 555830 1407200 723430 683770 0 0 0 33409 3842 35119 175168;175169;175170;175171;175172;175173;175174;175175;175176;175177;175178;175179;175180;175181 177030;177031;177032;177033;177034;177035;177036;177037;177038;177039 177039 10 TLEEMELR AEHERQAKELFLLRKTLEEMELRIETQKQT ELFLLRKTLEEMELRIETQKQTLNARDESI K T L L R I 0 1 0 0 0 0 3 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 8 0 1019.4957 O15083;X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 287 294 ERC2;ERC1 ERC protein 2;ELKS/Rab6-interacting/CAST family member 1 no no 2 0.036433 65.252 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33410 3311;1519 35120 175182 177040 177040 1 TLEENKEEEGSEPPKAETQEGEPIAK PVWSDDDWLKKFSGKTLEENKEEEGSEPPK EPPKAETQEGEPIAKKARSNPQVYMDIKIG K T L A K K 2 0 1 0 0 1 9 2 0 1 1 3 0 0 3 1 2 0 0 0 0 0 26 2 2868.3513 Q9UNP9;E9PKY5;E9PEQ6;E9PIB0 Q9UNP9 109 134 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 4 1.6619E-08 42.806 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.67773 0.69341 10.695 5 Median 0.69625 0.7273 NaN 1 0 Median 0.7129 0.7081 NaN 1 0 Median 0.54058 0.55795 NaN 1 0 Median 0.67773 0.64157 NaN 1 0 Median 0.63375 0.69341 NaN 1 0 Median NaN NaN NaN 0 0 Median 22324000 13002000 9322300 3553000 1875700 1677300 2332900 1326300 1006600 8464000 5355300 3108700 4205700 2322800 1882900 3768500 2121700 1646800 0 0 0 33411 4347 35121 175183;175184;175185;175186;175187 177041;177042;177043;177044;177045;177046;177047;177048;177049 177049 9 TLEESKEMDIK LNKNSKNSNGQELEKTLEESKEMDIKRKEN ELEKTLEESKEMDIKRKENKGNDTPLALES K T L I K R 0 0 0 1 0 0 3 0 0 1 1 2 1 0 0 1 1 0 0 0 0 0 11 1 1321.6435 Q7Z6Z7 Q7Z6Z7 1703 1713 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2;3 0.00055446 134.68 By MS/MS By MS/MS 1 3 1.2816 1.9769 43.068 4 Linear 0.98821 1.0722 NaN 1 0 Median 1.8796 1.7916 48.421 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17416000 6648800 10768000 3840500 1687200 2153300 13576000 4961600 8614300 0 0 0 0 0 0 0 0 0 0 0 0 33412 3253 35122 175188;175189;175190;175191 177050;177051;177052;177053;177054 177052 5 TLEGEFSVTMWSSDEKK DPGNKKWEQKQVQIKTLEGEFSVTMWSSDE EGEFSVTMWSSDEKKDIDHETVVEEQIIGE K T L K K D 0 0 0 1 0 0 3 1 0 0 1 2 1 1 0 3 2 1 0 1 0 0 17 1 1972.9088 P25490;H0YJV7;H0YJU4 P25490 214 230 YY1 Transcriptional repressor protein YY1 yes no 3 0.050968 9.2834 By MS/MS 1 0.91831 0.9627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91831 0.9627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3624400 1762500 1862000 0 0 0 0 0 0 3624400 1762500 1862000 0 0 0 0 0 0 0 0 0 33413 2133 35123 175192 177055 177055 1 TLEGELHDLR NSKEAALSTALSEKRTLEGELHDLRGQVAK LSEKRTLEGELHDLRGQVAKLEAALGEAKK R T L L R G 0 1 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1181.6041 P02545;H0YAB0;Q3BDU5 P02545 157 166 LMNA Prelamin-A/C;Lamin-A/C no no 2 0.00034073 100.25 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 2.4077 2.0202 40.204 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2651 2.2514 15.323 2 0 Median 1.4822 1.2762 71.84 2 1 Median 2.4077 2.3892 NaN 1 0 Median 2.4067 2.0016 1.1601 2 0 Median 215640000 67220000 148420000 0 0 0 0 0 0 108760000 31207000 77552000 23618000 4703700 18915000 55857000 22850000 33008000 27410000 8459700 18950000 33414 1834;3010 35124 175193;175194;175195;175196;175197;175198;175199;175200 177056;177057;177058;177059;177060;177061;177062;177063;177064;177065;177066 177059 10 TLEGELHDLRGQVAK NSKEAALSTALSEKRTLEGELHDLRGQVAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE R T L A K L 1 1 0 1 0 1 2 2 1 0 3 1 0 0 0 0 1 0 0 1 0 0 15 1 1664.8846 P02545;H0YAB0;Q3BDU5 P02545 157 171 LMNA Prelamin-A/C;Lamin-A/C no no 2;3;4 5.8519E-58 234.3 By MS/MS By MS/MS By MS/MS By matching 2 2 11 3 1.1539 1.2184 19.947 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2942 1.3742 19.445 2 0 Median 2.1346 2.0472 4.6586 2 0 Median 1.1356 1.1678 7.9976 11 1 Median 1.416 1.2506 15.48 3 0 Median 426950000 196480000 230470000 0 0 0 0 0 0 16719000 7254900 9464300 9874100 2746000 7128200 393300000 183150000 210150000 7052000 3324500 3727600 33415 1834;3010 35125 175201;175202;175203;175204;175205;175206;175207;175208;175209;175210;175211;175212;175213;175214;175215;175216;175217;175218 177067;177068;177069;177070;177071;177072;177073;177074;177075;177076;177077;177078;177079;177080;177081;177082;177083;177084;177085;177086;177087;177088;177089 177084 23 TLEGVITR RSMVCTQKSKKTEFKTLEGVITRTKHGEKV SKKTEFKTLEGVITRTKHGEKVSLSSKCAE K T L T R T 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 8 0 887.50763 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7;C9JNH8 Q92878 113 120 RAD50 DNA repair protein RAD50 yes no 2 0.0024268 119.29 By matching By MS/MS By MS/MS 1 1 1 1.0236 1.1252 9.3634 3 Plateau 0.98176 0.94426 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0236 1.1252 NaN 1 0 Median 1.2395 1.0912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29943000 14067000 15875000 4389900 2189200 2200700 0 0 0 20549000 9609300 10940000 5003200 2268800 2734300 0 0 0 0 0 0 33416 3561 35126 175219;175220;175221 177090;177091;177092 177091 3 TLEIALEQK SSLASSGLKKDSRLKTLEIALEQKKEECLK KDSRLKTLEIALEQKKEECLKMESQLKKAH K T L Q K K 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1043.5863 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 698 706 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.0011471 84.743 By matching By MS/MS 1 1 1.2942 1.1164 16.419 2 Median NaN NaN NaN 0 0 Median 1.4434 1.2538 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1604 0.99401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4381100 1715500 2665700 0 0 0 1405200 505560 899620 0 0 0 2975900 1209900 1766000 0 0 0 0 0 0 33417 3311 35127 175222;175223 177093 177093 1 TLELQGLINDLQR TILELRSQLQISNNRTLELQGLINDLQRER NRTLELQGLINDLQRERENLRQEIEKFQKQ R T L Q R E 0 1 1 1 0 2 1 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 13 0 1511.8308 P15924 P15924 1763 1775 DSP Desmoplakin yes yes 2;3 5.9879E-07 141.93 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 0.56241 0.57724 81.128 11 Median 0.52134 0.51832 123.77 4 0 Median 1.0973 0.87938 1.3158 3 0 Plateau 0.52514 0.58393 47.94 2 0 Median NaN NaN NaN 0 0 Median 0.41111 0.47425 27.793 2 0 Median NaN NaN NaN 0 0 Median 46770000 23626000 23144000 9524700 5555500 3969200 32992000 15494000 17497000 1851200 1129200 722040 0 0 0 2402100 1446500 955640 0 0 0 33418 2021 35128 175224;175225;175226;175227;175228;175229;175230;175231;175232;175233;175234 177094;177095;177096;177097;177098;177099;177100 177094 7 TLENPVNVYNPSHSDSLASQQSVASHPR HQEDTYGALDFTLSRTLENPVNVYNPSHSD SDSLASQQSVASHPRQSGPGAPNLDRFYQQ R T L P R Q 2 1 3 1 0 2 1 0 2 0 2 0 0 0 3 6 1 0 1 3 0 0 28 0 3033.454 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 1001 1028 SEC16A Protein transport protein Sec16A yes no 4 3.9465E-29 81.341 By MS/MS 1 0.56599 0.5312 NaN 1 Median 0.56599 0.5312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15214000 10420000 4793700 15214000 10420000 4793700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33419 1513 35129 175235 177101 177101 1 TLEPQELAR APTDVKELSTKEPGRTLEPQELARIAGKVP TKEPGRTLEPQELARIAGKVPGLQNEQKRF R T L A R I 1 1 0 0 0 1 2 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 1055.5611 Q8WWM7;H3BUF6 Q8WWM7 517 525 ATXN2L Ataxin-2-like protein yes no 2 0.0045216 60.436 By MS/MS By matching By matching By matching By matching 1 2 2 1 1 0.95976 0.82502 26.665 7 Median 0.72869 0.71109 NaN 1 0 Median 0.93504 0.82275 0.38898 2 0 Median NaN NaN NaN 0 0 Median 1.4969 1.3341 5.9234 2 0 Median 0.66187 0.77782 NaN 1 0 Median 1.3705 1.1227 NaN 1 0 Median 10204000 4771200 5433300 2920000 1515800 1404200 3624600 1736400 1888200 0 0 0 1672900 665690 1007200 1221400 607710 613720 765440 245480 519950 33420 3511 35130 175236;175237;175238;175239;175240;175241;175242 177102 177102 1 TLEPVKPPTVPNDYMTSPAR PMSGRGTLGRNTPYKTLEPVKPPTVPNDYM KPPTVPNDYMTSPARLGSQHSPGRTASLNQ K T L A R L 1 1 1 1 0 0 1 0 0 0 1 1 1 0 5 1 3 0 1 2 0 0 20 1 2212.1198 B6VEX4;A0A0A0MRT6;Q8IZP0 B6VEX4 200 219 ABI1 Abl interactor 1 yes no 3 1.466E-07 64.723 By MS/MS By MS/MS 1 1 0.37294 0.38276 87.752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63418 0.71188 NaN 1 1 Median 0.21931 0.2058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14624000 8355000 6268600 0 0 0 0 0 0 12999000 6979500 6019200 1624900 1375500 249390 0 0 0 0 0 0 33421 171 35131 175243;175244 177103;177104 177103 2 TLEPYILPFMFYNDVKK EYFIVFEPRLPLLSRTLEPYILPFMFYNDV EPYILPFMFYNDVKKQQQMAALTKEKDQLS R T L K K Q 0 0 1 1 0 0 1 0 0 1 2 2 1 2 2 0 1 0 2 1 0 0 17 1 2117.0907 A6NHR9;J3KTL8 A6NHR9 1603 1619 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 7.4282E-06 52.862 By MS/MS 2 0.71456 0.81733 8.4803 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71456 0.81733 8.4803 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4436200 2509700 1926500 0 0 0 0 0 0 4436200 2509700 1926500 0 0 0 0 0 0 0 0 0 33422 518 35132 175245;175246 177105;177106 177105 2 TLEQALQLAR ARYKDITKLSTDVAKTLEQALQLARRLHST TDVAKTLEQALQLARRLHSTHEELCTWLDK K T L A R R 2 1 0 0 0 2 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1141.6455 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3627 3636 DST Dystonin yes no 2 0.00048487 119.29 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2434 1.1955 17.605 4 Median 1.019 1.002 NaN 1 0 Median 1.4021 1.2215 NaN 1 0 Median 1.1027 1.17 NaN 1 0 Median 1.7611 1.5342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18250000 8860400 9389300 9280800 4621200 4659600 1203900 535870 668000 7444300 3606100 3838200 320820 97303 223520 0 0 0 0 0 0 33423 934 35133 175247;175248;175249;175250 177107;177108 177108 1 TLEQEIER QAQESEEEEESRSTRTLEQEIERLREEGSR EESRSTRTLEQEIERLREEGSRQLEEQQRL R T L E R L 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 1016.5138 Q9NVM6 Q9NVM6 123 130 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 0.014843 50.607 By matching By MS/MS 1 1 1.0816 0.94765 10.763 2 Median NaN NaN NaN 0 0 Median 1.111 1.0226 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.053 0.8782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3310300 1528600 1781700 0 0 0 411370 176440 234920 0 0 0 2899000 1352200 1546800 0 0 0 0 0 0 33424 4135 35134 175251;175252 177109 177109 1 TLEQHDNIVTHYK YKSSEEDKKEEEVKKTLEQHDNIVTHYKNM KKTLEQHDNIVTHYKNMIREQDLQLEELRQ K T L Y K N 0 0 1 1 0 1 1 0 2 1 1 1 0 0 0 0 2 0 1 1 0 0 13 0 1596.7896 O60763 O60763 644 656 USO1 General vesicular transport factor p115 yes yes 2;3;4 4.0389E-07 117.09 By MS/MS By MS/MS By MS/MS 2 5 2 1.4879 1.2765 31.137 9 Median 1.3205 1.2909 29.228 2 0 Median 1.379 1.1641 11.97 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6947 2.2383 15.802 2 0 Median 46188000 16902000 29286000 13201000 4927500 8273800 30771000 11395000 19376000 0 0 0 0 0 0 0 0 0 2216100 580290 1635800 33425 1630 35135 175253;175254;175255;175256;175257;175258;175259;175260;175261 177110;177111;177112;177113;177114;177115;177116;177117;177118 177115 9 TLEQQENFAEVAR ARLRCFCMTDDKVDKTLEQQENFAEVARSR DKTLEQQENFAEVARSRDVEVLEGKPIYVD K T L A R S 2 1 1 0 0 2 3 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 13 0 1533.7423 I6L894;Q01484;E9PHW9;D6RHE1;E9PCH6;H0Y931;H0YAG3 I6L894 1324 1336 ANK2 Ankyrin-2 yes no 2 0.026794 27.329 By matching By MS/MS By matching 1 1 1 0.84277 0.7424 15.811 3 Median 0.58549 0.56852 NaN 1 0 Median 0.89824 0.7525 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84277 0.7424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5583000 3116900 2466100 3730600 2239600 1491000 1125800 541980 583850 0 0 0 726560 335290 391280 0 0 0 0 0 0 33426 1297 35136 175262;175263;175264 177119 177119 1 TLEQQENFEEVAR SSLRCFCMTDDKVDKTLEQQENFEEVARSK DKTLEQQENFEEVARSKDIEVLEGKPIYVD K T L A R S 1 1 1 0 0 2 4 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 13 0 1591.7478 Q12955;A0A087WZ65;A0A087WTF3 Q12955 1341 1353 ANK3 Ankyrin-3 yes no 2 1.9832E-42 185.71 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1.1078 0.97305 10.925 5 Median 0.98879 0.95333 NaN 1 0 Median 1.2221 1.0298 NaN 1 0 Median 0.89279 0.97305 NaN 1 0 Median 1.2715 1.0992 17.339 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23001000 11489000 11512000 4188300 1992100 2196200 2125000 968110 1156900 12484000 6645500 5838300 4204100 1883400 2320700 0 0 0 0 0 0 33427 2773 35137 175265;175266;175267;175268;175269;175270 177120;177121;177122;177123;177124;177125 177122 6 TLESQAVETEK AFFVHDAEIVSSLGKTLESQAVETEKVLDI SLGKTLESQAVETEKVLDIIYQPQAIFRVR K T L E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1233.6089 Q9NVX2;A0A0A0MRH0;K7ERN7 Q9NVX2 76 86 NLE1 Notchless protein homolog 1 yes no 2 0.00017515 100.02 By matching By MS/MS By MS/MS 1 1 4 1.1193 1.0152 8.5739 6 Median NaN NaN NaN 0 0 Median 1.0715 0.91999 NaN 1 0 Median 1.1339 1.1228 NaN 1 0 Median 1.1241 1.0152 7.3551 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11249000 4884100 6365300 0 0 0 2160800 995330 1165500 3344100 1351300 1992800 5744500 2537500 3207000 0 0 0 0 0 0 33428 4142 35138 175271;175272;175273;175274;175275;175276 177126;177127;177128;177129;177130 177129 5 TLESQLASVR AGEAAKARRCERGLKTLESQLASVRRGRKI ERGLKTLESQLASVRRGRKINEDEIPPPVA K T L V R R 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1102.5982 H7C1U3;Q5T0F9 H7C1U3 43 52 CC2D1B Coiled-coil and C2 domain-containing protein 1B yes no 2 0.007999 60.436 By MS/MS 1 1.6154 1.3765 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6154 1.3765 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389000 550650 838380 0 0 0 0 0 0 0 0 0 1389000 550650 838380 0 0 0 0 0 0 33429 1260 35139 175277 177131 177131 1 TLESSIQGLR CTTGIDGAMTIWDFKTLESSIQGLRIM___ IWDFKTLESSIQGLRIM_____________ K T L L R I 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1102.5982 Q92747 Q92747 359 368 ARPC1A Actin-related protein 2/3 complex subunit 1A yes yes 2 0.00037046 105.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 1 1.1851 1.1846 31.457 11 Median 1.1851 1.1846 7.4206 3 0 Median 1.3277 1.1296 47.185 4 1 Median 1.1675 1.2802 31.46 3 0 Plateau 1.4721 1.2661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124830000 55585000 69249000 51399000 22558000 28841000 27022000 11920000 15102000 42841000 19652000 23189000 3573300 1455500 2117700 0 0 0 0 0 0 33430 3552 35140 175278;175279;175280;175281;175282;175283;175284;175285;175286;175287;175288 177132;177133;177134;177135;177136;177137;177138;177139;177140;177141 177138 9 TLESTWEKPQELK EYKTADGKTYYYNNRTLESTWEKPQELKEK NRTLESTWEKPQELKEKEKLEEKIKEPIKE R T L L K E 0 0 0 0 0 1 3 0 0 0 2 2 0 0 1 1 2 1 0 0 0 0 13 1 1587.8144 O14776;G3V220 O14776 452 464 TCERG1 Transcription elongation regulator 1 yes no 2;3 1.8294E-06 115.57 By matching By MS/MS By MS/MS By matching By matching 1 3 4 1 1 0.91242 0.93777 16.774 10 Median NaN NaN NaN 0 0 Median 1.0597 0.99276 NaN 1 0 Median 0.7797 0.90917 15.449 3 0 Plateau 1.0072 0.97161 12.783 4 0 Median 0.67932 0.71852 NaN 1 0 Median 1.2995 1.1792 NaN 1 0 Median 90331000 46222000 44109000 0 0 0 1573100 653900 919220 54129000 29284000 24845000 32085000 15124000 16961000 2081200 971450 1109700 463310 188650 274660 33431 1494 35141 175289;175290;175291;175292;175293;175294;175295;175296;175297;175298 177142;177143;177144;177145;177146;177147;177148;177149;177150 177150 9 TLESTWEKPQELKEK EYKTADGKTYYYNNRTLESTWEKPQELKEK TLESTWEKPQELKEKEKLEEKIKEPIKEPS R T L E K E 0 0 0 0 0 1 4 0 0 0 2 3 0 0 1 1 2 1 0 0 0 0 15 2 1844.952 O14776;G3V220 O14776 452 466 TCERG1 Transcription elongation regulator 1 yes no 3;4 0.00025609 45.54 By MS/MS 3 0.90801 1.0911 30.022 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90801 1.0911 30.022 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59832000 30801000 29031000 0 0 0 0 0 0 59832000 30801000 29031000 0 0 0 0 0 0 0 0 0 33432 1494 35142 175299;175300;175301 177151;177152;177153;177154 177153 4 TLESVDPLGGLNTIDILTAIR GGARICYIFHETFGRTLESVDPLGGLNTID PLGGLNTIDILTAIRNATGPRPALFVPEVS R T L I R N 1 1 1 2 0 0 1 2 0 3 4 0 0 0 1 1 3 0 0 1 0 0 21 0 2210.2158 O00429 O00429 377 397 DNM1L Dynamin-1-like protein yes yes 2;3 0.0011677 28.976 By MS/MS 2 0.73244 0.72814 3.1732 2 Median 0.73244 0.72814 3.1732 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2143700 1198900 944780 2143700 1198900 944780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33433 1463 35143 175302;175303 177155;177156;177157 177155 3 TLETLIR SMSSDTARTSPVTARTLETLIRLATAHAKA RTSPVTARTLETLIRLATAHAKARMSKTVD R T L I R L 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 7 0 844.50182 P25205;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 617 623 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0077866 94.407 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 1 1.0004 0.98173 30.452 8 Median 1.0055 0.98173 6.8757 2 1 Median 1.2263 1.06 NaN 1 0 Median 0.56711 0.60013 44.598 2 1 Median NaN NaN NaN 0 0 Median 0.90929 0.9534 18.936 2 0 Median 1.3047 1.0885 NaN 1 0 Median 51232000 25650000 25582000 17645000 8623400 9022100 11297000 4973600 6323600 12595000 7007900 5586800 0 0 0 8285100 4453700 3831400 1410000 591470 818510 33434 2129 35144 175304;175305;175306;175307;175308;175309;175310;175311 177158;177159;177160;177161;177162 177160 5 TLETVPLER ______________________________ ______________________________ K T L E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1056.5815 P22626;A0A087WUI2 P22626 4 12 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2 7.3009E-07 161.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 6 4 4 8 5 0.9569 0.8764 15.203 28 Median 1.4977 1.4954 NaN 1 1 Median 1.0074 0.8726 16.093 6 2 Median 0.85992 0.87266 13.431 4 0 Median 1.0898 0.89348 15.741 4 2 Median 0.87191 0.88521 3.2823 8 1 Median 1.0383 0.81071 3.4622 5 0 Median 1931500000 980590000 950920000 16818000 6391500 10426000 36730000 17359000 19371000 229450000 120810000 108640000 110830000 52978000 57856000 1357500000 691420000 666100000 180170000 91641000 88527000 33435 2103 35145 175312;175313;175314;175315;175316;175317;175318;175319;175320;175321;175322;175323;175324;175325;175326;175327;175328;175329;175330;175331;175332;175333;175334;175335;175336;175337;175338;175339 177163;177164;177165;177166;177167;177168;177169;177170;177171;177172;177173;177174;177175;177176;177177;177178;177179;177180;177181;177182;177183;177184;177185;177186;177187;177188;177189;177190;177191;177192;177193;177194;177195;177196;177197;177198;177199;177200;177201;177202;177203;177204;177205;177206;177207;177208 177177 46 TLEVEIEPGVR VCDECPNVKLVNEERTLEVEIEPGVRDGME NEERTLEVEIEPGVRDGMEYPFIGEGEPHV R T L V R D 0 1 0 0 0 0 3 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1240.6663 Q9UBS4;H7C2Y5 Q9UBS4 207 217 DNAJB11 DnaJ homolog subfamily B member 11 yes no 2 9.4189E-07 166.16 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.072 1.0757 15.392 7 Median 1.1067 1.0678 5.6101 2 1 Median 1.0077 0.87647 29 2 0 Median 0.97979 1.0335 6.3557 2 0 Median 1.2801 1.0757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 239570000 117770000 121810000 32920000 14575000 18345000 39330000 17253000 22077000 155990000 80790000 75203000 11331000 5148600 6182600 0 0 0 0 0 0 33436 4246 35146 175340;175341;175342;175343;175344;175345;175346 177209;177210;177211;177212;177213;177214;177215 177211 7 TLEVVSPSQSVTGSAGHTPYYQSPTDEK TQEVVEEHCASPEDKTLEVVSPSQSVTGSA SAGHTPYYQSPTDEKSSHLPTEVIEKPPAV K T L E K S 1 0 0 1 0 2 2 2 1 0 1 1 0 0 3 5 4 0 2 3 0 0 28 0 2964.3989 P46821 P46821 1317 1344 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 1.5905E-20 64.502 By MS/MS By matching By MS/MS By MS/MS 2 1 2 2 0.67671 0.70737 19.16 7 Median 0.58317 0.57151 30.161 2 1 Median 0.64991 0.56392 NaN 1 0 Median 0.58536 0.63516 18.27 2 0 Median 0.79757 0.754 2.5717 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57812000 35319000 22493000 11223000 8011300 3211700 466580 264520 202060 31860000 19620000 12239000 14262000 7422700 6839700 0 0 0 0 0 0 33437 2347 35147 175347;175348;175349;175350;175351;175352;175353 177216;177217;177218;177219;177220;177221;177222;177223;177224;177225 177217 10 TLFANIVLSGGSTLFK VVAFAIHKSDMDLRRTLFANIVLSGGSTLF LFANIVLSGGSTLFKGFGDRLLSEVKKLAP R T L F K G 1 0 1 0 0 0 0 2 0 1 3 1 0 2 0 2 2 0 0 1 0 0 16 0 1666.9294 P42025 P42025 293 308 ACTR1B Beta-centractin yes yes 2 0.0019502 37.681 By matching By MS/MS 2 2 0.78203 0.78771 19.113 4 Median 0.78203 0.80033 6.67 2 0 Median 0.76742 0.67062 27.18 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1836100 878590 957500 644810 344240 300570 1191300 534350 656930 0 0 0 0 0 0 0 0 0 0 0 0 33438 2304 35148 175354;175355;175356;175357 177226;177227 177226 2 TLFGFLGK QVTNVSPSASSEQMRTLFGFLGKIDELRLF ASSEQMRTLFGFLGKIDELRLFPPDDSPLP R T L G K I 0 0 0 0 0 0 0 2 0 0 2 1 0 2 0 0 1 0 0 0 0 0 8 0 881.50109 Q5T760;Q05519;B4DWT1;S4R3C4 Q5T760 51 58 SRSF11 Serine/arginine-rich splicing factor 11 yes no 2 0.016506 49.358 By matching By matching By MS/MS By matching By matching By matching 1 1 7 2 1 1 1.1894 1.1377 30.224 13 Median 1.358 1.3164 NaN 1 0 Median 0.50042 0.43223 NaN 1 0 Median 1.1747 1.1586 16.42 7 0 Median 1.3445 1.1353 0.0010547 2 0 Median 1.1045 1.1377 NaN 1 0 Median 1.2598 1.0863 NaN 1 0 Median 26456000 11823000 14632000 914230 421590 492650 2092400 904570 1187800 22216000 9989600 12227000 465530 188720 276800 679130 273770 405360 88144 44976 43168 33439 2717 35149 175358;175359;175360;175361;175362;175363;175364;175365;175366;175367;175368;175369;175370 177228;177229 177229 2 TLFGLHLSQK LQMDQSYKPDENEVRTLFGLHLSQKRNNGV ENEVRTLFGLHLSQKRNNGVVDKSLFSNVV R T L Q K R 0 0 0 0 0 1 0 1 1 0 3 1 0 1 0 1 1 0 0 0 0 0 10 0 1142.6448 P31939;H7C1S2 P31939 380 389 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00039065 88.136 By MS/MS By MS/MS By matching 1 1 1 1.1709 1.0884 28.682 3 Median 1.1709 1.0884 NaN 1 0 Median 1.1702 0.97877 NaN 1 0 Median 1.6347 1.6817 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54488000 25731000 28757000 36999000 17637000 19362000 14804000 6551600 8252900 2684400 1542400 1142000 0 0 0 0 0 0 0 0 0 33440 2207 35150 175371;175372;175373 177230;177231;177232;177233 177231 4 TLFGLHLSQKR LQMDQSYKPDENEVRTLFGLHLSQKRNNGV NEVRTLFGLHLSQKRNNGVVDKSLFSNVVT R T L K R N 0 1 0 0 0 1 0 1 1 0 3 1 0 1 0 1 1 0 0 0 0 0 11 1 1298.7459 P31939;H7C1S2 P31939 380 390 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2 0.00025344 111.46 By MS/MS 1 1.2788 1.2829 NaN 1 Median 1.2788 1.2829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10290000 4480700 5809200 10290000 4480700 5809200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33441 2207 35151 175374 177234 177234 1 TLFIGNLEK PLDERIDEFHPKATRTLFIGNLEKTTTYHD HPKATRTLFIGNLEKTTTYHDLRNIFQRFG R T L E K T 0 0 1 0 0 0 1 1 0 1 2 1 0 1 0 0 1 0 0 0 0 0 9 0 1033.5808 Q96T58;H0Y5U7 Q96T58 439 447 SPEN Msx2-interacting protein yes no 2 0.0053299 57.96 By MS/MS By MS/MS 1 2 1.0992 1.1508 1.8712 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0735 1.1508 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1116 1.156 2.6206 2 0 Median NaN NaN NaN 0 0 Median 15766000 7339200 8426500 0 0 0 0 0 0 7514000 3632100 3881800 0 0 0 8251700 3707000 4544700 0 0 0 33442 3741 35152 175375;175376;175377 177235;177236 177236 2 TLFLELIR KGNDKGDESQSQSVRTLFLELIRARRPLVL SQSQSVRTLFLELIRARRPLVLHNGLIDLV R T L I R A 0 1 0 0 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1003.6066 Q96GM8 Q96GM8 175 182 TOE1 Target of EGR1 protein 1 yes yes 2 0.036811 37.558 By matching By matching By MS/MS By matching By matching By matching 1 2 1 1 1 1 1.2186 1.1993 8.7023 7 Median 1.175 1.1899 NaN 1 0 Median 1.2011 1.0614 1.7015 2 0 Median 1.2108 1.272 NaN 1 0 Median 1.3561 1.1993 NaN 1 0 Median 1.3263 1.3354 NaN 1 0 Median 1.4373 1.2324 NaN 1 0 Median 5344600 2295800 3048800 1747100 779870 967250 995800 427170 568630 889590 404830 484760 72364 40450 31913 331460 139840 191620 1308300 503660 804600 33443 3660 35153 175378;175379;175380;175381;175382;175383;175384 177237 177237 1 TLFLSIPESR ENAGPQNTKSEHVKKTLFLSIPESRSSIED EHVKKTLFLSIPESRSSIEDAQCPGLPDLI K T L S R S 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 2 1 0 0 0 0 0 10 0 1161.6394 Q15398 Q15398 679 688 DLGAP5 Disks large-associated protein 5 yes yes 2 0.009148 76.827 By MS/MS By matching 1 1 1.2706 1.2218 39.807 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5079 1.6189 NaN 1 0 Median 1.0706 0.92203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3402400 1504200 1898200 0 0 0 0 0 0 2891600 1281500 1610100 510800 222620 288180 0 0 0 0 0 0 33444 2948 35154 175385;175386 177238 177238 0 TLFNELR FLTLRYSSRRNPYCRTLFNELRIVVEHIIM SRRNPYCRTLFNELRIVVEHIIMKPACPLF R T L L R I 0 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 891.48142 P57088;D6RAA6 P57088 206 212 TMEM33 Transmembrane protein 33 yes no 2 0.026776 52.683 By MS/MS By MS/MS 1 1 1.2132 1.106 13.693 2 Median 1.2045 1.2185 NaN 1 0 Median 1.222 1.004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11237000 5209600 6027700 3021000 1487100 1533900 8216200 3722500 4493800 0 0 0 0 0 0 0 0 0 0 0 0 33445 2516 35155 175387;175388 177239;177240;177241 177239 3 TLFPGTDHIDQLK IWSVGCIMAELLTGRTLFPGTDHIDQLKLI GRTLFPGTDHIDQLKLILRLVGTPGAELLK R T L L K L 0 0 0 2 0 1 0 1 1 1 2 1 0 1 1 0 2 0 0 0 0 0 13 0 1483.7671 Q16539;B4E0K5 Q16539 221 233 MAPK14 Mitogen-activated protein kinase 14 yes no 2;3 0.0025189 47.559 By MS/MS By matching 2 1 0.73892 0.69015 10.281 3 Median 0.73831 0.68959 0.11366 2 1 Median 0.92929 0.824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12001000 6820300 5180700 11617000 6656100 4961100 383910 164240 219680 0 0 0 0 0 0 0 0 0 0 0 0 33446 2987 35156 175389;175390;175391 177242;177243 177242 2 TLFPLIEAK AEVTTKSQIPLSKIKTLFPLIEAKKKDQVT PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH K T L A K K 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 9 0 1030.6063 P13010 P13010 535 543 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.002528 71.379 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 2 1 1.0447 0.99228 9.3955 12 Median 1.0263 0.9517 7.8762 2 0 Median 1.0892 0.94413 7.3271 2 0 Median 0.91317 0.94814 12.202 5 0 Median 1.2346 1.0645 5.8876 2 0 Median NaN NaN NaN 0 0 Median 1.2688 1.059 NaN 1 0 Median 197480000 97868000 99614000 23797000 11891000 11906000 24136000 10985000 13152000 128760000 65687000 63077000 20178000 9049800 11129000 0 0 0 606090 255840 350260 33447 1986 35157 175392;175393;175394;175395;175396;175397;175398;175399;175400;175401;175402;175403 177244;177245;177246;177247;177248;177249;177250;177251;177252;177253;177254;177255;177256;177257 177256 14 TLFQIQAER AYPKGMYDVGLPSRKTLFQIQAERILKLQQ GLPSRKTLFQIQAERILKLQQVAEKYYGNK K T L E R I 1 1 0 0 0 2 1 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1104.5928 Q16222 Q16222 134 142 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase yes yes 2 0.061839 64.42 By MS/MS 1 0.77442 0.73905 NaN 1 Median 0.77442 0.73905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9653200 5282900 4370300 9653200 5282900 4370300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33448 2981 35158 175404 177258 177258 0 TLFQPQTGAYQTLAK KNRDDRKLINTDKEKTLFQPQTGAYQTLAK TLFQPQTGAYQTLAKECVAQGCCVDLFLFP K T L A K E 2 0 0 0 0 3 0 1 0 0 2 1 0 1 1 0 3 0 1 0 0 0 15 0 1665.8726 P53992;G5EA31 P53992 671 685 SEC24C Protein transport protein Sec24C yes no 2 1.4447E-05 74.944 By MS/MS 1 0.80162 0.77607 NaN 1 Median 0.80162 0.77607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10693000 6222100 4471000 10693000 6222100 4471000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33449 1134 35159 175405 177259 177259 1 TLFSNIVLSGGSTLFK VLVFAIQKSDMDLRRTLFSNIVLSGGSTLF LFSNIVLSGGSTLFKGFGDRLLSEVKKLAP R T L F K G 0 0 1 0 0 0 0 2 0 1 3 1 0 2 0 3 2 0 0 1 0 0 16 0 1682.9243 P61163;R4GMT0 P61163 293 308 ACTR1A Alpha-centractin yes no 2 0.00050865 45.879 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 2 1.276 1.1573 10.97 11 Median 1.2795 1.2152 9.5463 2 0 Median 1.2889 1.103 10.233 3 0 Plateau 1.0729 1.1348 4.0244 2 0 Median NaN NaN NaN 0 0 Median 1.2811 1.2503 1.0465 2 0 Median 1.4201 1.1944 4.4639 2 0 Median 46415000 20795000 25621000 6336200 2865200 3471000 24650000 10720000 13930000 13029000 6154700 6874500 0 0 0 2164100 971210 1192900 235560 83214 152350 33450 2547 35160 175406;175407;175408;175409;175410;175411;175412;175413;175414;175415;175416 177260;177261;177262;177263 177262 4 TLFSTHYHSLVEDYSQNVAVR ANAVVKELAETIKCRTLFSTHYHSLVEDYS YHSLVEDYSQNVAVRLGHMACMVENECEDP R T L V R L 1 1 1 1 0 1 1 0 2 0 2 0 0 1 0 3 2 0 2 3 0 0 21 0 2465.1975 P52701;A0A494C0M1 P52701 1243 1263 MSH6 DNA mismatch repair protein Msh6 yes no 3;4 3.7467E-47 148.26 By MS/MS By matching By MS/MS 1 1 3 1.0796 1.0628 7.7737 5 Median 1.1049 1.0371 NaN 1 0 Median 1.1307 0.99787 NaN 1 0 Median 1.0713 1.1775 6.1677 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74660000 34837000 39823000 12135000 5632100 6503000 461200 198260 262940 62064000 29007000 33057000 0 0 0 0 0 0 0 0 0 33451 2453 35161 175417;175418;175419;175420;175421 177264;177265;177266;177267;177268 177267 4 TLFSVINNGHNQK FELEDSNEIFTQLYRTLFSVINNGHNQKVH YRTLFSVINNGHNQKVHMHMVDLMSSIICE R T L Q K V 0 0 3 0 0 1 0 1 1 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1470.7579 Q9NTI5 Q9NTI5 160 172 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.00036257 55.452 By MS/MS By matching By MS/MS 1 1 1 0.97265 1.0398 8.6364 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97265 1.0398 NaN 1 0 Median 1.3009 1.1824 NaN 1 0 Median 0.95684 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median 15565000 7228300 8336800 0 0 0 0 0 0 9322900 4449300 4873500 1403200 549720 853480 4839000 2229200 2609800 0 0 0 33452 4107 35162 175422;175423;175424 177269;177270;177271 177269 3 TLFSVINNSHNK FELEDCNEIFIQLFRTLFSVINNSHNKKVQ LFRTLFSVINNSHNKKVQMHMLDLMSSIIM R T L N K K 0 0 3 0 0 0 0 0 1 1 1 1 0 1 0 2 1 0 0 1 0 0 12 0 1372.7099 Q29RF7 Q29RF7 170 181 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2;3 1.8561E-09 173.37 By MS/MS By MS/MS 2 3 1.098 1.1269 38.015 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0745 1.1491 2.7578 2 0 Median 1.263 1.0813 52.265 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29741000 16348000 13394000 0 0 0 0 0 0 23282000 13707000 9574800 6459300 2640300 3819000 0 0 0 0 0 0 33453 3003 35163 175425;175426;175427;175428;175429 177272;177273;177274;177275 177273 4 TLFSVINNSHNKK FELEDCNEIFIQLFRTLFSVINNSHNKKVQ FRTLFSVINNSHNKKVQMHMLDLMSSIIME R T L K K V 0 0 3 0 0 0 0 0 1 1 1 2 0 1 0 2 1 0 0 1 0 0 13 1 1500.8049 Q29RF7 Q29RF7 170 182 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 9.0175E-06 90.926 By MS/MS By MS/MS 1 2 1.1441 1.2485 18.483 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0769 1.2485 NaN 1 0 Median 1.3633 1.2873 26.02 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19048000 8300200 10748000 0 0 0 0 0 0 14080000 6281000 7798900 4968000 2019200 2948800 0 0 0 0 0 0 33454 3003 35164 175430;175431;175432 177276;177277;177278 177276 3 TLFTLEELR DVAYGKTKIFIRTPRTLFTLEELRAQMLIR FIRTPRTLFTLEELRAQMLIRIVLFLQKVW R T L L R A 0 1 0 0 0 0 2 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 9 0 1120.6128 K7EIG7;O94832;J3QRN6 K7EIG7 598 606 MYO1D Unconventional myosin-Id yes no 2 0.035824 34.808 By matching By matching By MS/MS By matching 1 1 1 1 1.116 1.0823 27.581 4 Median 0.64921 0.65564 NaN 1 0 Median 1.2945 1.1356 NaN 1 0 Median 0.96206 1.0316 NaN 1 0 Median 1.3521 1.2038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2273200 1151200 1122000 457110 289300 167810 332920 132920 200000 1359500 682160 677360 123630 46800 76833 0 0 0 0 0 0 33455 1359 35165 175433;175434;175435;175436 177279 177279 1 TLGDFAAEYAK VTGKGQDGIGSKAEKTLGDFAAEYAKSNRS KAEKTLGDFAAEYAKSNRSTCKGCMEKIEK K T L A K S 3 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 11 0 1184.5714 P09874 P09874 109 119 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00017393 79.148 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 10 7 3 7 1.2379 1.0821 27.147 29 Median 1.0224 0.98206 NaN 1 0 Median 1.2747 1.0821 NaN 1 0 Median 1.0219 1.0745 42.084 10 2 Median 1.3174 1.137 13.083 7 0 Median 0.97939 0.99378 14.19 3 0 Median 1.2656 1.0365 18.007 7 0 Median 1077800000 512080000 565730000 35033000 16565000 18468000 6490000 2819800 3670200 762300000 372380000 389920000 202810000 88086000 114720000 46614000 21595000 25019000 24560000 10628000 13932000 33456 1922 35166 175437;175438;175439;175440;175441;175442;175443;175444;175445;175446;175447;175448;175449;175450;175451;175452;175453;175454;175455;175456;175457;175458;175459;175460;175461;175462;175463;175464;175465 177280;177281;177282;177283;177284;177285;177286;177287;177288;177289;177290;177291;177292;177293;177294;177295;177296;177297;177298;177299;177300;177301;177302;177303;177304;177305;177306;177307;177308;177309;177310;177311 177286 32 TLGDTGFMPPDK ITHLVIRPNGRVALRTLGDTGFMPPDKITR ALRTLGDTGFMPPDKITRS___________ R T L D K I 0 0 0 2 0 0 0 2 0 0 1 1 1 1 2 0 2 0 0 0 0 0 12 0 1277.5962 Q96HS1;F5GXG4 Q96HS1 274 285 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.0012241 55.567 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.0493 0.89576 13.7 4 Median 0.7982 0.74766 NaN 1 0 Median 1.019 0.85848 NaN 1 0 Median 1.0805 1.0332 NaN 1 0 Median 1.0993 0.93467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14327000 7652600 6674000 7251400 4272500 2978900 2691300 1231800 1459600 3240100 1600300 1639800 1143700 548010 595650 0 0 0 0 0 0 33457 3669 35167 175466;175467;175468;175469 177312;177313;177314;177315;177316;177317 177313 6 TLGECGFTSQTAR EQRLYKDDQLLDDGKTLGECGFTSQTARPQ GKTLGECGFTSQTARPQAPATVGLAFRADD K T L A R P 1 1 0 0 1 1 1 2 0 0 1 0 0 1 0 1 3 0 0 0 0 0 13 0 1426.6511 B8ZZU8;I3L0M9;Q15370 B8ZZU8 51 63 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 1.3189E-07 118.28 By MS/MS By MS/MS 3 1 1.4842 1.0557 14.681 4 Linear NaN NaN NaN 0 0 Median 1.4853 1.2658 16.421 3 2 Plateau 0.96289 0.97636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21258000 9234500 12024000 0 0 0 19464000 8315200 11149000 1794600 919310 875300 0 0 0 0 0 0 0 0 0 33458 651 35168 175470;175471;175472;175473 177318;177319;177320;177321 177320 3 TLGECGFTSQTARPQAPATVGLAFR EQRLYKDDQLLDDGKTLGECGFTSQTARPQ TARPQAPATVGLAFRADDTFEALCIEPFSS K T L F R A 4 2 0 0 1 2 1 3 0 0 2 0 0 2 2 1 4 0 0 1 0 0 25 1 2635.3177 B8ZZU8;I3L0M9;Q15370 B8ZZU8 51 75 TCEB2 Transcription elongation factor B polypeptide 2 yes no 3 1.9517E-17 70.315 By matching By MS/MS By MS/MS 1 2 1 0.93388 0.82477 14.633 4 Median 0.9677 1.0143 NaN 1 0 Median 0.93388 0.82477 4.4903 2 0 Median 0.65827 0.71487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40692000 21968000 18724000 1215800 660960 554850 7043400 3522000 3521400 32433000 17785000 14648000 0 0 0 0 0 0 0 0 0 33459 651 35169 175474;175475;175476;175477 177322;177323;177324;177325 177323 4 TLGEIPTYGLAGNR RKGAIVFNATSEFCRTLGEIPTYGLAGNRE RTLGEIPTYGLAGNREEQEELMDFERDEER R T L N R E 1 1 1 0 0 0 1 3 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 0 1460.7623 O43290 O43290 562 575 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 1.9291E-08 107.79 By MS/MS By matching 1 1 0.99832 0.95413 9.0322 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95153 1.0171 NaN 1 0 Median 1.0474 0.8951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304900 2729400 2575500 0 0 0 0 0 0 4524000 2317600 2206300 780920 411790 369130 0 0 0 0 0 0 33460 1563 35170 175478;175479 177326;177327 177326 2 TLGEIPTYGLAGNREEQEELMDFER RKGAIVFNATSEFCRTLGEIPTYGLAGNRE AGNREEQEELMDFERDEERSANGGSESDGE R T L E R D 1 2 1 1 0 1 6 3 0 1 3 0 1 1 1 0 2 0 1 0 0 0 25 1 2896.3549 O43290 O43290 562 586 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.03319 19.975 By MS/MS 1 1.2096 1.3976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2096 1.3976 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5000200 2482000 2518200 0 0 0 0 0 0 5000200 2482000 2518200 0 0 0 0 0 0 0 0 0 33461 1563 35171 175480 177328 177328 1 TLGFNLESGWGSGR DQLKKHGFKLGPAPKTLGFNLESGWGSGRA KTLGFNLESGWGSGRAGPSYSMPVHAAVQM K T L G R A 0 1 1 0 0 0 1 4 0 0 2 0 0 1 0 2 1 1 0 0 0 0 14 0 1479.7106 Q14527;A0A0C4DGA6 Q14527 177 190 HLTF Helicase-like transcription factor yes no 2 0.0003072 73.781 By matching By MS/MS By matching By matching 1 1 1 1 1.2228 1.2626 13.019 4 Median NaN NaN NaN 0 0 Median 1.6168 1.4289 NaN 1 0 Median 1.2394 1.3548 NaN 1 0 Median 1.2065 1.0748 NaN 1 0 Median 1.1013 1.1767 NaN 1 0 Median NaN NaN NaN 0 0 Median 3748100 1671700 2076400 0 0 0 204570 94503 110070 2134700 986770 1147900 99261 43080 56180 1309500 547300 762220 0 0 0 33462 238 35172 175481;175482;175483;175484 177329;177330 177329 2 TLGGLEMELR GMQPQLQIRGVGFDRTLGGLEMELRLRERL VGFDRTLGGLEMELRLRERLAGLFNEQRKG R T L L R L 0 1 0 0 0 0 2 2 0 0 3 0 1 0 0 0 1 0 0 0 0 0 10 0 1117.5801 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 269 278 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.00038663 79.474 By MS/MS By matching By matching By matching 1 1 1 1 1.2124 1.0882 19.437 4 Median 1.2204 1.1749 NaN 1 0 Median 1.2044 1.0079 NaN 1 0 Median 1.3507 1.4737 NaN 1 0 Median 1.0823 0.95497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29387000 13290000 16097000 17378000 7913300 9465000 9891100 4328800 5562300 1921600 946420 975170 196130 101230 94900 0 0 0 0 0 0 33463 101 35173 175485;175486;175487;175488 177331 177331 1 TLGILGLGR KWERKKFMGTELNGKTLGILGLGRIGREVA TELNGKTLGILGLGRIGREVATRMQSFGMK K T L G R I 0 1 0 0 0 0 0 3 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 898.56 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YF78;A0A286YFE1 A0A286YF22 147 155 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.0024179 72.138 By MS/MS By matching By MS/MS By MS/MS 2 2 2 3 1.4137 1.2955 44.937 9 Median 1.102 1.0778 4.2342 2 0 Median 1.3073 1.1359 10.051 2 0 Median 1.3449 1.353 6.1443 2 0 Median NaN NaN NaN 0 0 Median 2.7217 2.8071 8.3943 3 0 Median NaN NaN NaN 0 0 Median 28444000 11456000 16988000 15887000 7456000 8430900 833610 333730 499880 5637900 2215900 3422000 0 0 0 6085300 1450200 4635100 0 0 0 33464 351 35174 175489;175490;175491;175492;175493;175494;175495;175496;175497 177332;177333;177334;177335;177336;177337;177338;177339;177340;177341;177342;177343 177339 12 TLGKDHPAVAATLNNLAVLYGK DAANLLNDALAIREKTLGKDHPAVAATLNN AVAATLNNLAVLYGKRGKYKEAEPLCKRAL K T L G K R 4 0 2 1 0 0 0 2 1 0 4 2 0 0 1 0 2 0 1 2 0 0 22 1 2265.2481 Q9H0B6;A8MZ87;G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 286 307 KLC2;KLC1 Kinesin light chain 2;Kinesin light chain 1 no no 3 0.032156 13.188 By MS/MS 1 0.63233 0.59984 NaN 1 Median 0.63233 0.59984 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3007900 1912300 1095600 3007900 1912300 1095600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33465 896;3922 35175 175498 177344;177345 177344 2 TLGLGEEWR LRFLRSAEFFNYTVRTLGLGEEWRGGDVAR FNYTVRTLGLGEEWRGGDVARTVGGGQKVR R T L W R G 0 1 0 0 0 0 2 2 0 0 2 0 0 0 0 0 1 1 0 0 0 0 9 0 1059.5349 O60568;H7C2A8;C9JU11 O60568 68 76 PLOD3 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 yes no 2 0.017009 42.109 By MS/MS 1 1.2159 1.1903 NaN 1 Median 1.2159 1.1903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2701400 1239900 1461400 2701400 1239900 1461400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33466 1621 35176 175499 177346 177346 1 TLGLYGKDQQEAALVDMVNDGVEDLR LTLYQSNTILRHLGRTLGLYGKDQQEAALV AALVDMVNDGVEDLRCKYISLIYTNYEAGK R T L L R C 2 1 1 4 0 2 2 3 0 0 4 1 1 0 0 0 1 0 1 3 0 0 26 1 2848.3913 P09211;A8MX94 P09211 76 101 GSTP1 Glutathione S-transferase P yes no 3 3.7943E-09 49.186 By MS/MS By MS/MS 1 1 1.0979 1.0834 0.042369 2 Median 1.0391 1.0838 NaN 1 0 Median 1.1602 1.0831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21118000 9910400 11208000 18948000 8983500 9964300 2170300 926910 1243400 0 0 0 0 0 0 0 0 0 0 0 0 33467 1912 35177;35178 175500;175501 177347;177348 177347 690 2 TLGSFEFEGHSLTQFVR LPEASDVGSITLALRTLGSFEFEGHSLTQF GSFEFEGHSLTQFVRHCADHFLNSEHKEIR R T L V R H 0 1 0 0 0 1 2 2 1 0 2 0 0 3 0 2 2 0 0 1 0 0 17 0 1953.9585 P42345 P42345 588 604 MTOR Serine/threonine-protein kinase mTOR yes yes 3 0.055317 9.7575 By MS/MS 1 0.81228 0.8161 NaN 1 Median 0.81228 0.8161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1430700 846560 584140 1430700 846560 584140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33468 2310 35179 175502 177349 177349 1 TLGTGSFGR PAQNTAHLDQFERIKTLGTGSFGRVMLVKH QFERIKTLGTGSFGRVMLVKHKETGNHYAM K T L G R V 0 1 0 0 0 0 0 3 0 0 1 0 0 1 0 1 2 0 0 0 0 0 9 0 894.45593 A0A087WVC4;A0A0A0MS54;P22694;B1APF7;B1APG1;B1APG0;B1APG2;B1APF8;B1APF9;B1APG3;P17612;Q15136;K7ERP6 P17612 49 57 PRKACB;PRKACA;KIN27 cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit alpha no no 2 0.00087364 93.143 By MS/MS 1 1.0378 0.90316 NaN 1 Median NaN NaN NaN 0 0 Median 1.0378 0.90316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5662000 2816700 2845300 0 0 0 5662000 2816700 2845300 0 0 0 0 0 0 0 0 0 0 0 0 33469 2044;40 35180 175503 177350;177351 177351 2 TLGTMIAGDTSGDYR DLVQIKQMFAQMYQKTLGTMIAGDTSGDYR TLGTMIAGDTSGDYRRLLLAIVGQ______ K T L Y R R 1 1 0 2 0 0 0 3 0 1 1 0 1 0 0 1 3 0 1 0 0 0 15 0 1556.7141 P20073 P20073 465 479 ANXA7 Annexin A7 yes yes 2 3.6242E-06 89.548 By MS/MS By matching By MS/MS 2 1 1 1.0833 0.99102 23.783 4 Median 0.96502 0.93806 5.6072 2 2 Median 1.1671 1.0063 NaN 1 0 Median 1.5363 1.5312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21931000 9189800 12742000 13052000 5823400 7228500 2147200 886820 1260400 6732400 2479600 4252800 0 0 0 0 0 0 0 0 0 33470 2073 35181 175504;175505;175506;175507 177352;177353;177354;177355 177354 4 TLGTMIAGDTSGDYRR DLVQIKQMFAQMYQKTLGTMIAGDTSGDYR LGTMIAGDTSGDYRRLLLAIVGQ_______ K T L R R L 1 2 0 2 0 0 0 3 0 1 1 0 1 0 0 1 3 0 1 0 0 0 16 1 1712.8152 P20073 P20073 465 480 ANXA7 Annexin A7 yes yes 2;3 2.618E-10 117.37 By MS/MS By matching By MS/MS By MS/MS 4 2 2 1 1.1615 1.0475 44.606 9 Median 0.909 0.94779 25.424 4 0 Median 1.1763 1.0608 1.7923 2 0 Median NaN NaN NaN 0 0 Median 1.2436 1.16 4.7199 2 0 Median 2.9649 3.1964 NaN 1 0 Median NaN NaN NaN 0 0 Median 68263000 33671000 34592000 44256000 24359000 19897000 3452900 1628300 1824600 0 0 0 13861000 5945900 7915100 6692600 1737200 4955300 0 0 0 33471 2073 35182 175508;175509;175510;175511;175512;175513;175514;175515;175516 177356;177357;177358;177359;177360;177361;177362;177363 177362 8 TLGTPTQPGSTPR CALSSPSLAFTPPIKTLGTPTQPGSTPRIS IKTLGTPTQPGSTPRISTMRPLATAYKAST K T L P R I 0 1 0 0 0 1 0 2 0 0 1 0 0 0 3 1 4 0 0 0 0 0 13 0 1311.6783 Q8NFH5 Q8NFH5 270 282 NUP35 Nucleoporin NUP53 yes yes 2 0.0021913 48.741 By MS/MS By MS/MS By MS/MS 1 2 1 0.88352 0.74635 14.75 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59886 0.59023 NaN 1 0 Median 0.88352 0.74635 4.9927 2 0 Median NaN NaN NaN 0 0 Median 0.9738 0.83162 NaN 1 0 Median 14532000 7591700 6939900 0 0 0 0 0 0 6781300 4016300 2765000 6631300 2986000 3645400 0 0 0 1118900 589450 529470 33472 3437 35183 175517;175518;175519;175520 177364;177365;177366;177367;177368;177369;177370;177371;177372 177368 9 TLGVDLVALATR ECNVRVSRSFPFVSKTLGVDLVALATRVIM VSKTLGVDLVALATRVIMGEEVEPVGLMTG K T L T R V 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1227.7187 F8VPD4;P27708 F8VPD4 1166 1177 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 3.7563E-05 96.015 By MS/MS By matching 1 2 1.2373 1.1081 17.92 3 Plateau 1.3733 1.2913 NaN 1 0 Median 1.1004 0.94679 0.60595 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13377000 5661900 7714800 9181800 3673300 5508500 4194900 1988600 2206300 0 0 0 0 0 0 0 0 0 0 0 0 33473 1057 35184 175521;175522;175523 177373;177374 177374 2 TLHETVNFSGVK LHCIVTYCEYCQEEKTLHETVNFSGVKRPF EEKTLHETVNFSGVKRPFCSEGCKLLYKQD K T L V K R 0 0 1 0 0 0 1 1 1 0 1 1 0 1 0 1 2 0 0 2 0 0 12 0 1330.6881 Q9UBW7 Q9UBW7 689 700 ZMYM2 Zinc finger MYM-type protein 2 yes yes 3 0.00067414 48.568 By matching By MS/MS 1 1 1.0593 1.0543 9.7003 2 Median NaN NaN NaN 0 0 Median 1.0753 0.98441 NaN 1 0 Median 1.0436 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7628000 3886200 3741800 0 0 0 2214000 1110800 1103200 5414000 2775500 2638600 0 0 0 0 0 0 0 0 0 33474 4252 35185 175524;175525 177375 177375 1 TLHEWLQQHGIPGLQGVDTR VGECCPTPSHWSATRTLHEWLQQHGIPGLQ LQQHGIPGLQGVDTRELTKKLREQGSLLGK R T L T R E 0 1 0 1 0 3 1 3 2 1 3 0 0 0 1 0 2 1 0 1 0 0 20 0 2284.1713 F8VPD4;P27708 F8VPD4 103 122 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 7.7147E-09 64.723 By MS/MS By matching 1 1 1.0407 0.92624 36.004 2 Median 1.2729 1.1948 NaN 1 0 Median 0.8508 0.71805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12970000 5457500 7512900 11417000 4615700 6801100 1553600 841800 711760 0 0 0 0 0 0 0 0 0 0 0 0 33475 1057 35186 175526;175527 177376 177376 1 TLHGQETYTPR PPGELCPDVLYRTGRTLHGQETYTPRLILM RTGRTLHGQETYTPRLILMDLKGSLSSLKE R T L P R L 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 3 0 1 0 0 0 11 0 1301.6364 A0A3B3IUD2;Q9BUK6 A0A3B3IUD2 56 66 MSTO1 Protein misato homolog 1 yes no 3 0.060809 13.008 By MS/MS By matching 1 1 0.87203 0.81171 12.495 2 Median 0.74972 0.74307 NaN 1 0 Median 1.0143 0.8867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1329100 738630 590450 563180 262870 300300 765910 475760 290150 0 0 0 0 0 0 0 0 0 0 0 0 33476 447 35187 175528;175529 177377 177377 1 TLHGSALFQR LTSLRNVSCEVDMFKTLHGSALFQRGQTQV VDMFKTLHGSALFQRGQTQVLCTVTFDSLE K T L Q R G 1 1 0 0 0 1 0 1 1 0 2 0 0 1 0 1 1 0 0 0 0 0 10 0 1128.604 Q8TCS8;H7C3C5 Q8TCS8 379 388 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes no 2 0.0077713 60.91 By MS/MS 1 1.1745 1.0122 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1745 1.0122 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3172100 1342400 1829600 0 0 0 0 0 0 0 0 0 3172100 1342400 1829600 0 0 0 0 0 0 33477 3467 35188 175530 177378 177378 1 TLHLPVSTTLSDVLDR HVIQHPMYGAGHKFRTLHLPVSTTLSDVLD LHLPVSTTLSDVLDRVSDTPSITAKLISEQ R T L D R V 0 1 0 2 0 0 0 0 1 0 4 0 0 0 1 2 3 0 0 2 0 0 16 0 1765.9574 A0A3B3IUB9;Q9NR09 Q9NR09 3857 3872 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2;3 0.00073532 36.638 By MS/MS By MS/MS 2 3 0.95404 0.78603 11.825 5 Median 0.88819 0.89174 19.84 2 0 Median 0.95404 0.78603 2.7582 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13861000 6896600 6964700 2847500 1322100 1525400 11014000 5574500 5439300 0 0 0 0 0 0 0 0 0 0 0 0 33478 4073;445 35189 175531;175532;175533;175534;175535 177379;177380;177381;177382;177383 177382 5 TLHLQTGNLLNWGR GTDSRAAKALLARARTLHLQTGNLLNWGRL RTLHLQTGNLLNWGRLRKKCPSTHSEELHD R T L G R L 0 1 2 0 0 1 0 2 1 0 4 0 0 0 0 0 2 1 0 0 0 0 14 0 1621.8689 P48507 P48507 17 30 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 3 0.00025711 54.524 By MS/MS By MS/MS 2 2 1.055 1.0712 22.271 4 Median 1.0975 1.0994 16.864 2 0 Median 1.0428 0.94347 31.139 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9634300 4141100 5493200 7271400 2872900 4398400 2363000 1268200 1094800 0 0 0 0 0 0 0 0 0 0 0 0 33479 2361 35190 175536;175537;175538;175539 177384;177385;177386 177385 3 TLHNLVIQYAGQGR AAAQQGGYEIPARLRTLHNLVIQYAGQGRY RTLHNLVIQYAGQGRYEVAVPLCRQALEDL R T L G R Y 1 1 1 0 0 2 0 2 1 1 2 0 0 0 0 0 1 0 1 1 0 0 14 0 1568.8423 Q6P597;K7ENJ3;K7EL76 Q6P597 209 222 KLC3 Kinesin light chain 3 yes no 3 0.00026899 52.891 By MS/MS 1 0.93032 0.90045 NaN 1 Median 0.93032 0.90045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5748500 2760900 2987600 5748500 2760900 2987600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33480 3161 35191 175540 177387 177387 1 TLHNLVIQYASQGR AAAQQGGYEIPARLRTLHNLVIQYASQGRY RTLHNLVIQYASQGRYEVAVPLCKQALEDL R T L G R Y 1 1 1 0 0 2 0 1 1 1 2 0 0 0 0 1 1 0 1 1 0 0 14 0 1598.8529 Q9H0B6;A8MZ87;E9PQ02;A8MX29;G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 215 228 KLC2;KLC1 Kinesin light chain 2;Kinesin light chain 1 no no 2;3 6.277E-06 128.28 By MS/MS By MS/MS By matching By matching 7 3 1 2 1.213 1.049 27.194 13 Median 1.0859 1.0391 32.544 7 0 Median 1.2363 1.0698 13.915 3 0 Median 1.3559 1.2942 NaN 1 0 Median 1.075 0.92554 27.318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 169460000 72436000 97022000 75833000 32581000 43251000 21706000 9993600 11712000 60336000 24782000 35554000 11584000 5079500 6504300 0 0 0 0 0 0 33481 896;3922 35192 175541;175542;175543;175544;175545;175546;175547;175548;175549;175550;175551;175552;175553 177388;177389;177390;177391;177392 177390 5 TLHPAVHAGILAR SELTGFPEMLGGRVKTLHPAVHAGILARNI VKTLHPAVHAGILARNIPEDNADMARLDFN K T L A R N 3 1 0 0 0 0 0 1 2 1 2 0 0 0 1 0 1 0 0 1 0 0 13 0 1354.7834 P31939;C9JLK0 P31939 67 79 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2;3 4.3863E-07 108.57 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 0.99777 0.87 25.355 10 Median 0.93937 0.88378 22.949 4 0 Median 0.99777 0.86174 15.558 4 0 Median 1.4404 1.5148 NaN 1 0 Median 1.0718 0.89493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154060000 75337000 78722000 78501000 40494000 38007000 71494000 33255000 38239000 2145400 787140 1358200 1919100 800500 1118600 0 0 0 0 0 0 33482 2207 35193 175554;175555;175556;175557;175558;175559;175560;175561;175562;175563 177393;177394;177395;177396;177397;177398;177399;177400;177401;177402;177403;177404;177405 177396 13 TLHPDLGTDK VPVWSGMNVAGVSLKTLHPDLGTDKDKEQW GVSLKTLHPDLGTDKDKEQWKEVHKQVVES K T L D K D 0 0 0 2 0 0 0 1 1 0 2 1 0 0 1 0 2 0 0 0 0 0 10 0 1095.556 P00338 P00338 213 222 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00037911 115.71 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.97101 0.81487 16.647 5 Median 1.0938 1.0369 NaN 1 0 Median 0.9143 0.81109 0.65753 2 0 Median 1.0677 1.0447 NaN 1 0 Median 0.8476 0.7181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28232000 13858000 14373000 5723300 2759900 2963400 20015000 9786300 10228000 969560 519730 449830 1524200 792270 731900 0 0 0 0 0 0 33483 1813 35194 175564;175565;175566;175567;175568 177406;177407;177408;177409;177410;177411 177406 6 TLHPDLGTDKDK VPVWSGMNVAGVSLKTLHPDLGTDKDKEQW SLKTLHPDLGTDKDKEQWKEVHKQVVESAY K T L D K E 0 0 0 3 0 0 0 1 1 0 2 2 0 0 1 0 2 0 0 0 0 0 12 1 1338.6779 P00338 P00338 213 224 LDHA L-lactate dehydrogenase A chain yes yes 2;3 0.00014028 78.705 By MS/MS By MS/MS By matching By matching 2 2 2 1 0.94316 0.90471 14.758 7 Median 1.0205 0.99002 5.773 2 0 Median 0.8991 0.81023 6.7928 2 0 Median 0.91337 0.96588 9.2512 2 0 Median 0.79186 0.69531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8383900 4264400 4119600 3204900 1468400 1736500 3926700 2125400 1801300 825360 411520 413840 426990 259070 167920 0 0 0 0 0 0 33484 1813 35195 175569;175570;175571;175572;175573;175574;175575 177412;177413;177414;177415 177414 4 TLHPDLGTDKDKEQWK VPVWSGMNVAGVSLKTLHPDLGTDKDKEQW LHPDLGTDKDKEQWKEVHKQVVESAYEVIK K T L W K E 0 0 0 3 0 1 1 1 1 0 2 3 0 0 1 0 2 1 0 0 0 0 16 2 1909.9534 P00338 P00338 213 228 LDHA L-lactate dehydrogenase A chain yes yes 3;4 4.3608E-11 163.23 By MS/MS By MS/MS By MS/MS By MS/MS 8 6 2 2 0.9213 0.96617 17.254 18 Median 0.92008 0.98397 19.714 8 0 Median 0.91244 0.9169 14.391 6 0 Median 0.9785 1.0099 7.1237 2 0 Median 0.86348 0.81741 7.7714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 384040000 190520000 193520000 105270000 51603000 53664000 182760000 93024000 89732000 74214000 34903000 39312000 21803000 10992000 10811000 0 0 0 0 0 0 33485 1813 35196 175576;175577;175578;175579;175580;175581;175582;175583;175584;175585;175586;175587;175588;175589;175590;175591;175592;175593 177416;177417;177418;177419;177420;177421;177422;177423;177424;177425;177426;177427;177428;177429;177430;177431;177432;177433;177434;177435;177436;177437;177438;177439;177440;177441 177436 26 TLHQIFEK EYTWEEDPLAGIIPRTLHQIFEKLTDNGTE LAGIIPRTLHQIFEKLTDNGTEFSVKVSLL R T L E K L 0 0 0 0 0 1 1 0 1 1 1 1 0 1 0 0 1 0 0 0 0 0 8 0 1014.5498 P52732 P52732 139 146 KIF11 Kinesin-like protein KIF11 yes yes 2 0.029007 60.59 By MS/MS 1 1.6124 1.3759 NaN 1 Median NaN NaN NaN 0 0 Median 1.6124 1.3759 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5237600 1817300 3420300 0 0 0 5237600 1817300 3420300 0 0 0 0 0 0 0 0 0 0 0 0 33486 2454 35197 175594 177442 177442 1 TLHSDDEGTVLDDSR LPDFQDGTKATFHYRTLHSDDEGTVLDDSR TLHSDDEGTVLDDSRARGKPMELIIGKKFK R T L S R A 0 1 0 4 0 0 1 1 1 0 2 0 0 0 0 2 2 0 0 1 0 0 15 0 1658.7384 O00170;E9PMH2 O00170 40 54 AIP AH receptor-interacting protein yes no 2;3 4.7124E-10 113.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1 1.2634 1.1326 26.867 11 Median 0.94231 0.91853 0.82875 2 0 Median 1.3589 1.1326 11.159 3 0 Median 0.95649 0.94051 38.42 2 0 Median 1.3766 1.1685 44.209 3 1 Median NaN NaN NaN 0 0 Median 1.6616 1.3781 NaN 1 0 Median 46875000 21187000 25688000 11136000 5306600 5829800 10111000 4415500 5695300 14200000 6540600 7659000 9072100 3873700 5198400 0 0 0 2356100 1050700 1305400 33487 1445 35198 175595;175596;175597;175598;175599;175600;175601;175602;175603;175604;175605 177443;177444;177445;177446;177447;177448;177449;177450;177451;177452;177453;177454;177455 177450 13 TLHSTFQPNISQGK ILRTQGLVPEHVETRTLHSTFQPNISQGKL RTLHSTFQPNISQGKLQMWVDVFPKSLGPP R T L G K L 0 0 1 0 0 2 0 1 1 1 1 1 0 1 1 2 2 0 0 0 0 0 14 0 1556.7947 Q9NZM1 Q9NZM1 1746 1759 MYOF Myoferlin yes yes 3 0.029194 28.812 By MS/MS 1 0.84701 0.80114 NaN 1 Median 0.84701 0.80114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2307400 1086200 1221100 2307400 1086200 1221100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33488 4192 35199 175606 177456 177456 1 TLHTDILFGLIK LASYSVVMVDEAHERTLHTDILFGLIKDVA HERTLHTDILFGLIKDVARFRPELKVLVAS R T L I K D 0 0 0 1 0 0 0 1 1 2 3 1 0 1 0 0 2 0 0 0 0 0 12 0 1369.7969 O60231;A0A140T947;Q5SQH5;A0A140T8Y5;A0A140T9T4 O60231 526 537 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 6.3335E-06 160.36 By matching By MS/MS By matching 1 2 1 1.0277 1.0109 47.423 4 Median 1.2537 1.2708 NaN 1 0 Median 0.76177 0.67035 61.612 2 0 Median 0.91286 0.98603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5156500 2280600 2875800 322330 141210 181120 4552400 1983500 2568900 281760 155970 125790 0 0 0 0 0 0 0 0 0 33489 1605 35200 175607;175608;175609;175610 177457 177457 1 TLHTTASNWLHLIPQTLSHLK TRTDSTSDGRPAWMRTLHTTASNWLHLIPQ SNWLHLIPQTLSHLKRTVENIKDPLFRFFE R T L L K R 1 0 1 0 0 1 0 0 3 1 5 1 0 0 1 2 4 1 0 0 0 0 21 0 2410.3121 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4379 4399 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 4 0.057565 14.326 By MS/MS 3 1.1388 1.0116 54.941 3 Median NaN NaN NaN 0 0 Median 1.1388 1.0116 54.941 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39665000 19006000 20659000 0 0 0 39665000 19006000 20659000 0 0 0 0 0 0 0 0 0 0 0 0 33490 2865 35201 175611;175612;175613 177458 177458 0 TLIDDDNPPVSFVK GLCRIWDTASGQCLKTLIDDDNPPVSFVKF KTLIDDDNPPVSFVKFSPNGKYILAATLDN K T L V K F 0 0 1 3 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 14 0 1558.7879 P61964 P61964 208 221 WDR5 WD repeat-containing protein 5 yes yes 2 2.1428E-07 113.47 By MS/MS By matching 1 1 0.78419 0.7065 3.2913 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71739 0.69025 NaN 1 0 Median 0.8572 0.72314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11510000 6289900 5219700 0 0 0 0 0 0 10298000 5641300 4656300 1212000 648570 563390 0 0 0 0 0 0 33491 2564 35202 175614;175615 177459;177460;177461;177462;177463;177464 177462 6 TLIEAGLPQK EPMDTSSVTHTEHYKTLIEAGLPQKVAERL TEHYKTLIEAGLPQKVAERLDEIFQTGLVA K T L Q K V 1 0 0 0 0 1 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1068.6179 O43390 O43390 32 41 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.00038123 80.165 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 3 0.98215 0.85278 9.8602 14 Median NaN NaN NaN 0 0 Median 1.1311 0.98049 10.675 2 0 Median 0.86267 0.8267 6.9826 2 0 Median 1.0236 0.91985 8.648 4 0 Median 0.8738 0.83406 3.7124 3 0 Median 1.0133 0.82907 7.7184 3 0 Median 420180000 222320000 197860000 0 0 0 9778300 4676500 5101800 245210000 131390000 113820000 25974000 12024000 13950000 118090000 64471000 53620000 21129000 9758700 11370000 33492 1568 35203 175616;175617;175618;175619;175620;175621;175622;175623;175624;175625;175626;175627;175628;175629 177465;177466;177467;177468;177469;177470;177471;177472;177473;177474;177475;177476;177477;177478;177479;177480;177481;177482;177483;177484 177477 20 TLIEELK KCLENRVAVLENQNKTLIEELKALKDLYCH AVLENQNKTLIEELKALKDLYCHKSD____ K T L L K A 0 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 0 844.49058 P16220;E9PAR2;G5E998 P16220 324 330 CREB1;CREM Cyclic AMP-responsive element-binding protein 1 no no 2 0.010865 81.297 By MS/MS By MS/MS By MS/MS By matching 4 4 2 3 1.065 1.2373 15.047 13 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0277 1.0337 4.2365 4 0 Median 1.1473 0.93748 14.386 4 0 Median 0.91584 0.89689 23.028 2 0 Median 1.2224 1.0009 19.913 3 0 Plateau 34396000 17055000 17341000 0 0 0 0 0 0 18744000 9508200 9235500 4104000 1998900 2105100 7274400 3478300 3796100 4273800 2069500 2204200 33493 2027 35204 175630;175631;175632;175633;175634;175635;175636;175637;175638;175639;175640;175641;175642 177485;177486;177487;177488;177489;177490;177491 177488 7 TLIENGEK RHFLQQATQVNAWDRTLIENGEKITSLHRE QVNAWDRTLIENGEKITSLHREVEKVKLDQ R T L E K I 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 902.47091 P37198;M0QXN5 P37198 364 371 NUP62 Nuclear pore glycoprotein p62 yes no 2 0.0055542 75.109 By MS/MS By MS/MS By matching 1 2 2 1.2256 1.0522 17.233 5 Median NaN NaN NaN 0 0 Median 1.2262 1.0612 NaN 1 0 Median 0.9487 0.97946 1.632 2 0 Median 1.4349 1.2482 24.162 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6105400 2983300 3122200 0 0 0 1185700 547540 638160 4315400 2157800 2157600 604350 277890 326460 0 0 0 0 0 0 33494 2267 35205 175643;175644;175645;175646;175647 177492;177493;177494;177495 177492 4 TLIGYSAAELNR VQGKRFVYKFVCDLKTLIGYSAAELNRLVT DLKTLIGYSAAELNRLVTECEQKKLAKMQL K T L N R L 2 1 1 0 0 0 1 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1306.6881 Q06546 Q06546 405 416 GABPA GA-binding protein alpha chain yes yes 2 5.4737E-06 98.943 By matching By MS/MS By MS/MS 1 2 1 1.2096 1.1205 40.962 4 Median NaN NaN NaN 0 0 Median 1.4491 1.2499 NaN 1 0 Median 1.4863 1.4527 52.194 2 0 Median 0.94309 0.808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33500000 14797000 18703000 0 0 0 1242300 450750 791580 26199000 11438000 14761000 6058300 2908200 3150200 0 0 0 0 0 0 33495 2726 35206 175648;175649;175650;175651 177496;177497;177498;177499 177499 4 TLINAEDPPMVVVR IQAFIRANKARDDYKTLINAEDPPMVVVRK KTLINAEDPPMVVVRKFVHLLDQSDQDFQE K T L V R K 1 1 1 1 0 0 1 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1552.8283 P46940;A0A0J9YXZ5;H0YLE8 P46940 857 870 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.7613E-06 94.616 By MS/MS By MS/MS By MS/MS By matching By matching 4 3 1 1 1 0.79969 0.72927 17.039 10 Median 0.762 0.72927 14.262 4 2 Median 0.81473 0.69569 4.7275 3 1 Median 0.81736 0.90244 NaN 1 0 Median 0.56494 0.4943 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88559 0.74701 NaN 1 0 Median 76638000 40244000 36394000 59829000 31360000 28469000 11698000 6118800 5579100 4455700 2342600 2113100 451390 316590 134800 0 0 0 203980 105800 98178 33496 2350 35207;35208 175652;175653;175654;175655;175656;175657;175658;175659;175660;175661 177500;177501;177502;177503;177504;177505;177506;177507;177508;177509;177510;177511 177503 1078 12 TLINELVK VQVCEGKKKQTNYLRTLINELVKGILPRSW KQTNYLRTLINELVKGILPRSWSHYTVPAG R T L V K G 0 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 8 0 928.55933 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4450 4457 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0039199 84.568 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1329 1.1287 17.532 4 Median 1.0845 1.0892 NaN 1 0 Median 1.1668 1.0428 NaN 1 0 Median 1.1001 1.1695 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4566 1.5408 NaN 1 0 Median NaN NaN NaN 0 0 Median 169040000 78995000 90043000 56567000 26336000 30231000 41209000 18359000 22850000 68987000 33204000 35783000 0 0 0 2273800 1095300 1178500 0 0 0 33497 2865 35209 175662;175663;175664;175665 177512;177513;177514;177515;177516;177517;177518 177512 7 TLIQNCGASTIR WPYRAVAQALEVIPRTLIQNCGASTIRLLT IPRTLIQNCGASTIRLLTSLRAKHTQENCE R T L I R L 1 1 1 0 1 1 0 1 0 2 1 0 0 0 0 1 2 0 0 0 0 0 12 0 1332.682 P49368;B4DUR8 P49368 450 461 CCT3 T-complex protein 1 subunit gamma yes no 2 5.5363E-06 134.68 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.2303 1.2399 17.249 5 Median 1.3413 1.2702 NaN 1 0 Median 1.1761 1.0117 4.8203 2 1 Median NaN NaN NaN 0 0 Median 1.8068 1.5145 NaN 1 0 Median 1.2303 1.2399 NaN 1 0 Median NaN NaN NaN 0 0 Median 51105000 22789000 28316000 15836000 6665700 9170500 31475000 14478000 16997000 0 0 0 786570 197390 589180 3007100 1447600 1559500 0 0 0 33498 2379 35210 175666;175667;175668;175669;175670;175671 177519;177520;177521;177522;177523;177524 177520 6 TLISASSDTTVK HTDWVNDIVLCCNGKTLISASSDTTVKVWN NGKTLISASSDTTVKVWNAHKGFCMSTLRT K T L V K V 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 3 3 0 0 1 0 0 12 0 1221.6452 Q8TAF3;C9JC24;F8W9K4;F8W7Q3 Q8TAF3 89 100 WDR48 WD repeat-containing protein 48 yes no 2 4.3735E-05 95.573 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.96834 0.92302 27.734 4 Median 1.4787 1.4911 NaN 1 0 Median 0.96357 0.85844 NaN 1 0 Median 0.97314 0.99246 NaN 1 0 Median 0.92748 0.80347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17460000 9130100 8329900 1227500 473970 753540 1329400 681370 648050 9780400 5424700 4355600 5122700 2550000 2572700 0 0 0 0 0 0 33499 3453 35211 175672;175673;175674;175675 177525;177526;177527;177528;177529 177525 5 TLITFAGMIPYR RVIEDRDSQLRSQARTLITFAGMIPYRTSG QARTLITFAGMIPYRTSGDTNARLVQMEVL R T L Y R T 1 1 0 0 0 0 0 1 0 2 1 0 1 1 1 0 2 0 1 0 0 0 12 0 1381.7428 Q8N1F7;H3BV15 Q8N1F7 791 802 NUP93 Nuclear pore complex protein Nup93 yes no 2 5.6537E-06 116.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 6 3 7 6 1.0602 1.0541 31.552 29 Median 1.1468 1.094 59.267 4 1 Median 1.0821 0.96874 50.982 3 0 Median 1.0947 1.1694 17.942 6 0 Linear 1.2837 1.1431 12.695 3 0 Plateau 1.0168 1.1385 15.723 7 0 Median 1.1954 1.0619 12.287 6 0 Median 2746100000 1293100000 1453000000 8203200 3661200 4542100 76626000 34831000 41795000 389460000 188850000 200610000 115450000 47266000 68188000 2153200000 1017100000 1136100000 3125800 1398800 1726900 33500 3356 35212;35213 175676;175677;175678;175679;175680;175681;175682;175683;175684;175685;175686;175687;175688;175689;175690;175691;175692;175693;175694;175695;175696;175697;175698;175699;175700;175701;175702;175703;175704 177530;177531;177532;177533;177534;177535;177536;177537;177538;177539;177540;177541;177542;177543;177544;177545;177546 177542 1717 17 TLITFVNK TLFDHAPDKLNVVKKTLITFVNKHLNKLNL KLNVVKKTLITFVNKHLNKLNLEVTELETQ K T L N K H 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 8 0 934.54877 Q9NVD7 Q9NVD7 267 274 PARVA Alpha-parvin yes yes 2 0.0094946 60.709 By matching By MS/MS By MS/MS 1 2 1 1.0278 0.96085 33.474 4 Median 0.92984 0.87768 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3619 1.3609 38.887 2 1 Median 1.0558 0.89314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32450000 14754000 17696000 2489600 1263700 1225800 0 0 0 27413000 12257000 15156000 2548200 1233300 1314800 0 0 0 0 0 0 33501 4127 35214 175705;175706;175707;175708 177547;177548;177549;177550 177549 4 TLIVEPHVIPNR RKDADVEDEDTEEAKTLIVEPHVIPNRGPY EAKTLIVEPHVIPNRGPYPYNQPKRNTIQF K T L N R G 0 1 1 0 0 0 1 0 1 2 1 0 0 0 2 0 1 0 0 2 0 0 12 0 1386.7983 O60306 O60306 776 787 AQR Intron-binding protein aquarius yes yes 3 0.00014719 75.695 By MS/MS By MS/MS 1 1 0.59479 0.63836 20.489 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50215 0.55226 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70452 0.73788 NaN 1 1 Median NaN NaN NaN 0 0 Median 11643000 7285500 4357200 0 0 0 0 0 0 7157200 4536400 2620800 0 0 0 4485500 2749100 1736400 0 0 0 33502 1611 35215 175709;175710 177551;177552;177553 177551 3 TLIVTHSNQALNQLFEK VQIISNIYHNFPEQRTLIVTHSNQALNQLF IVTHSNQALNQLFEKIMALDIDERHLLRLG R T L E K I 1 0 2 0 0 2 1 0 1 1 3 1 0 1 0 1 2 0 0 1 0 0 17 0 1955.0476 O60306 O60306 849 865 AQR Intron-binding protein aquarius yes yes 3 0.0012865 30.974 By MS/MS 1 1.0297 1.0985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0297 1.0985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16762000 7600400 9162000 0 0 0 0 0 0 16762000 7600400 9162000 0 0 0 0 0 0 0 0 0 33503 1611 35216 175711 177554;177555 177555 2 TLKDYNTALSLHK YKDENRTRYAFVMFKTLKDYNTALSLHKTV FKTLKDYNTALSLHKTVLQYRPVHIDPISR K T L H K T 1 0 1 1 0 0 0 0 1 0 3 2 0 0 0 1 2 0 1 0 0 0 13 1 1502.8093 B9ZVT1;Q8IXT5 B9ZVT1 333 345 RBM12B RNA-binding protein 12B yes no 3 0.062087 13.746 By MS/MS 2 0.81646 0.89242 43.347 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81646 0.89242 43.347 2 0 Median NaN NaN NaN 0 0 Median 11943000 7571600 4371100 0 0 0 0 0 0 0 0 0 0 0 0 11943000 7571600 4371100 0 0 0 33504 658 35217 175712;175713 177556 177556 1 TLKEQLNLLSR VQLNEEKFSLGVEIKTLKEQLNLLSRAEEA VEIKTLKEQLNLLSRAEEAKKEQVEEDNEV K T L S R A 0 1 1 0 0 1 1 0 0 0 4 1 0 0 0 1 1 0 0 0 0 0 11 1 1313.7667 Q14789;E7EU81;H0Y867 Q14789 930 940 GOLGB1 Golgin subfamily B member 1 yes no 2;3 3.8841E-05 136.96 By MS/MS By MS/MS By MS/MS 2 2 4 1.0522 1.0421 275.11 7 Median 1.0628 1.1084 1.6973 2 0 Median 1.2968 1.2264 23.029 2 1 Median NaN NaN NaN 0 0 Median 0.010163 0.0097672 44.749 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196900000 175520000 21378000 33300000 15957000 17344000 6289500 2684800 3604700 0 0 0 157310000 156880000 429700 0 0 0 0 0 0 33505 2900 35218 175714;175715;175716;175717;175718;175719;175720;175721 177557;177558;177559;177560;177561;177562;177563;177564;177565;177566 177558 10 TLKIPAMTIAK PANEDQKIGIEIIKRTLKIPAMTIAKNAGV IIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ R T L A K N 2 0 0 0 0 0 0 0 0 2 1 2 1 0 1 0 2 0 0 0 0 0 11 1 1185.7155 P10809 P10809 471 481 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 6.018E-05 115.57 By MS/MS By matching By matching 4 1 1 1.0347 0.9731 22.357 5 Median 0.97037 0.89531 5.8574 3 0 Median 1.2941 1.2179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6456 1.4666 NaN 1 0 Median 151480000 65889000 85594000 149230000 64965000 84265000 1061000 445290 615670 0 0 0 0 0 0 0 0 0 1191800 478030 713790 33506 1947 35219;35220 175722;175723;175724;175725;175726;175727 177567;177568;177569;177570;177571;177572;177573;177574 177568 721 8 TLKPEGNILR DIDVQLSSELTDSLRTLKPEGNILRDRFKS TDSLRTLKPEGNILRDRFKSFQRRNMIEPR R T L L R D 0 1 1 0 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 1 1139.6663 Q9NZM5;M0QZ34;M0QZU5;M0QYZ9 Q9NZM5 430 439 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes no 2 0.012909 65.246 By MS/MS By MS/MS 1 1 0.86793 0.83671 11.402 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75037 0.7719 NaN 1 1 Median 1.0039 0.90697 NaN 1 0 Median 10678000 6145000 4532700 0 0 0 0 0 0 0 0 0 0 0 0 6357100 4057800 2299300 4320700 2087200 2233400 33507 4193 35221 175728;175729 177575;177576 177576 2 TLKSFSMVDSSISNR FSGIGDIKSQETSVRTLKSFSMVDSSISNR TLKSFSMVDSSISNRQSFWQSAGETNPLIG R T L N R Q 0 1 1 1 0 0 0 0 0 1 1 1 1 1 0 5 1 0 0 1 0 0 15 1 1670.8298 H0Y3Q9;Q32MH5 H0Y3Q9 247 261 FAM214A Protein FAM214A yes no 2 0.043136 48.44 By MS/MS 1 1.2237 1.4672 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2237 1.4672 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8033600 5956200 2077400 0 0 0 0 0 0 8033600 5956200 2077400 0 0 0 0 0 0 0 0 0 33508 1144 35222 175730 177577 177577 383 1 TLLADKGEIR EDFFFYSLVYDPQQKTLLADKGEIRVGNRY DPQQKTLLADKGEIRVGNRYQADITDLLKE K T L I R V 1 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1114.6346 E7ESY4;Q13330;E7EQY4;E7EV10;Q9BTC8;E9PCS8;D6W5A2 E7ESY4 159 168 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 2 0.001927 88.948 By MS/MS By MS/MS By MS/MS 2 3 2 0.97088 1.0788 23.583 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89155 0.96814 15.301 2 0 Median NaN NaN NaN 0 0 Median 1.1254 1.1699 28.197 3 0 Median 1.0399 0.92339 30.432 2 0 Median 24576000 12084000 12492000 0 0 0 0 0 0 7145900 3618600 3527300 0 0 0 12333000 6189800 6143500 5096900 2275200 2821600 33509 888;881 35223 175731;175732;175733;175734;175735;175736;175737 177578;177579;177580;177581;177582;177583;177584;177585;177586 177578 8 TLLADQGEIR EDCFFYSLVFDPVQKTLLADQGEIRVGCKY DPVQKTLLADQGEIRVGCKYQAEIPDRLVE K T L I R V 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1114.5982 O94776 O94776 139 148 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.00033784 99.442 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 3 4 1.0837 0.98156 24.539 16 Median 0.96738 0.93641 NaN 1 1 Median 1.2836 1.1108 10.837 2 1 Median 1.2291 1.2781 21.721 2 0 Median 1.0057 0.86871 23.825 4 0 Median 1.0866 1.0779 39.547 3 1 Median 1.0591 0.84968 22.783 4 3 Median 163180000 79025000 84160000 3638500 1686800 1951600 10630000 4597000 6033100 94665000 45134000 49531000 14872000 8340600 6531600 29966000 14881000 15085000 9413300 4386000 5027300 33510 1723 35224 175738;175739;175740;175741;175742;175743;175744;175745;175746;175747;175748;175749;175750;175751;175752;175753 177587;177588;177589;177590;177591;177592;177593;177594;177595;177596;177597;177598;177599 177594 13 TLLAILR REAWASKDATYTSARTLLAILRLSTALARL DATYTSARTLLAILRLSTALARLRMVDVVE R T L L R L 1 1 0 0 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 7 0 798.53272 P33993 P33993 605 611 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0060381 94.669 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 1 1 1 1.3464 1.3278 12.175 7 Median 1.2398 1.1733 NaN 1 0 Median 1.5493 1.3426 7.0692 3 0 Plateau 1.2095 1.2315 NaN 1 0 Median 1.9763 1.6526 NaN 1 0 Median 1.3464 1.4384 NaN 1 0 Median NaN NaN NaN 0 0 Median 26454000 11766000 14688000 8349200 3746800 4602400 5014500 1829700 3184800 11527000 5452900 6074300 233800 73072 160730 1329100 663000 666060 0 0 0 33511 2225 35225 175754;175755;175756;175757;175758;175759;175760 177600;177601;177602;177603;177604 177603 5 TLLAPLSR DFSEKHSTLVNDAYKTLLAPLSRGLYLVS_ LVNDAYKTLLAPLSRGLYLVS_________ K T L S R G 1 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 B0QYH2;Q8IWL3 B0QYH2 130 137 HSCB Iron-sulfur cluster co-chaperone protein HscB, mitochondrial yes no 2 0.0078694 65.252 By MS/MS 1 0.95402 0.90048 NaN 1 Median 0.95402 0.90048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5195100 2366100 2829000 5195100 2366100 2829000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33512 556 35226 175761 177605 177605 1 TLLAQTLAK EKSNILLLGPTGSGKTLLAQTLAKCLDVPF PTGSGKTLLAQTLAKCLDVPFAICDCTTLT K T L A K C 2 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 9 0 957.58588 O76031 O76031 300 308 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 2 0.012642 60.91 By MS/MS By MS/MS 1 1 1.2325 1.1115 5.3406 2 Median 1.1199 1.0703 NaN 1 1 Median 1.3565 1.1543 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10022000 3834100 6188000 5465200 2284700 3180500 4556800 1549400 3007500 0 0 0 0 0 0 0 0 0 0 0 0 33513 1718 35227 175762;175763 177606;177607 177606 2 TLLDIDNTR DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN K T L T R M 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1059.556 P35527;CON__P35527 P35527 225 233 KRT9 Keratin, type I cytoskeletal 9 yes no 2 5.1682E-18 157.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 9 8 11 8 5 0.045183 0.045238 181.63 51 Median 0.071183 0.067098 230.75 11 10 Median 0.03178 0.026341 198.42 9 6 Median 0.035412 0.03469 160.03 8 7 Median 0.029008 0.024573 132.56 11 9 Median 0.12896 0.12862 164.2 7 7 Median 0.039422 0.031765 124.03 5 2 Median 2215400000 1812800000 402620000 651940000 445570000 206370000 265300000 221040000 44255000 322000000 291440000 30564000 261760000 251300000 10456000 586880000 483680000 103190000 127550000 119760000 7784100 + 33514 2242 35228 175764;175765;175766;175767;175768;175769;175770;175771;175772;175773;175774;175775;175776;175777;175778;175779;175780;175781;175782;175783;175784;175785;175786;175787;175788;175789;175790;175791;175792;175793;175794;175795;175796;175797;175798;175799;175800;175801;175802;175803;175804;175805;175806;175807;175808;175809;175810;175811;175812;175813;175814;175815 177608;177609;177610;177611;177612;177613;177614;177615;177616;177617;177618;177619;177620;177621;177622;177623;177624;177625;177626;177627;177628;177629;177630;177631;177632;177633;177634;177635;177636;177637;177638;177639;177640;177641;177642;177643;177644;177645;177646;177647;177648;177649;177650;177651;177652;177653;177654;177655;177656;177657;177658;177659;177660;177661;177662 177660 55 TLLDQHGQYPIWMNQR KDDMKMETDIKRNKKTLLDQHGQYPIWMNQ LLDQHGQYPIWMNQRQRKRLKAKREKRKGK K T L Q R Q 0 1 1 1 0 3 0 1 1 1 2 0 1 0 1 0 1 1 1 0 0 0 16 0 1998.9734 Q9BRT6 Q9BRT6 85 100 LLPH Protein LLP homolog yes yes 2;3 9.8735E-07 86.214 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 5 2 0.90071 0.80921 17.851 11 Median 1.07 1.0651 NaN 1 0 Median 0.96439 0.81172 8.3284 2 0 Median 0.69012 0.65757 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78313 0.79546 21.344 5 1 Median 1.0289 0.82958 3.5167 2 0 Median 58253000 30079000 28175000 1461300 775520 685770 955780 466770 489000 3427200 1719100 1708000 0 0 0 51713000 26782000 24931000 695940 335190 360750 33515 3803 35229;35230 175816;175817;175818;175819;175820;175821;175822;175823;175824;175825;175826 177663;177664;177665;177666;177667;177668;177669;177670 177666 1831 7 TLLDSLR PGALFVQSHLEDLKKTLLDSLRSTSSPAKR SHLEDLKKTLLDSLRSTSSPAKRPRLKCLL K T L L R S 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 7 0 816.47052 Q5JTH9 Q5JTH9 820 826 RRP12 RRP12-like protein yes yes 2 0.018182 81.381 By MS/MS 2 1.0688 1.1229 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0688 1.1229 NaN 1 1 Median NaN NaN NaN 0 0 Median 3373800 1822800 1551100 0 0 0 0 0 0 0 0 0 0 0 0 3373800 1822800 1551100 0 0 0 33516 3052 35231 175827;175828 177671;177672 177671 2 TLLEALEQR PATAPSTTEVPPPPRTLLEALEQRMERYQV VPPPPRTLLEALEQRMERYQVAAAQAKSKG R T L Q R M 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1071.5924 Q6P1N0;K7EJY5 Q6P1N0 347 355 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 2 0.0073226 51.854 By MS/MS By matching By matching 1 2 1 1.2784 1.1493 17.619 4 Median 1.2623 1.2421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3519 1.1493 3.6647 2 0 Median NaN NaN NaN 0 0 Median 0.96392 0.83774 NaN 1 0 Median 3062400 1454900 1607500 2313000 1105700 1207300 0 0 0 0 0 0 639780 292120 347660 0 0 0 109590 57005 52584 33517 3153 35232 175829;175830;175831;175832 177673;177674 177673 2 TLLEEEYFR LIPGSQFWDASKTLRTLLEEEYFREKLSDG ASKTLRTLLEEEYFREKLSDGIGVMLPQVL R T L F R E 0 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1198.587 P52701;A0A494C0M1;A0A087WWJ1 P52701 636 644 MSH6 DNA mismatch repair protein Msh6 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 1.0752 0.9993 15.231 10 Median 0.941 0.90163 1.6534 2 0 Median 1.2191 1.0325 26.927 3 0 Median 0.879 0.95427 3.8639 2 0 Median 1.2435 1.0914 5.0392 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66100000 33077000 33023000 28137000 14050000 14086000 9879500 4857400 5022000 24286000 12457000 11829000 3797800 1712100 2085700 0 0 0 0 0 0 33518 2453 35233 175833;175834;175835;175836;175837;175838;175839;175840;175841;175842 177675;177676;177677;177678;177679;177680;177681 177676 7 TLLEFLKR MKEDPDMASAVAAIRTLLEFLKRDKGETIQ SAVAAIRTLLEFLKRDKGETIQGLRANLTS R T L K R D 0 1 0 0 0 0 1 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 8 1 1018.6175 Q14232;F5H0D0;H0YGG4 Q14232 29 36 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2 0.0099427 68.915 By MS/MS By matching By matching 1 1 1 1.3946 1.3161 1.2101 3 Median 1.2883 1.3019 NaN 1 0 Median 1.4649 1.3338 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3946 1.3161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27548000 11356000 16192000 25071000 10354000 14717000 1487100 624080 862990 0 0 0 989390 377390 612000 0 0 0 0 0 0 33519 2866 35234 175843;175844;175845 177682 177682 1 TLLEGEESR MNTKLALDLEIATYRTLLEGEESRMSGECA EIATYRTLLEGEESRMSGECAPNVSVSVST R T L S R M 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1032.5088 P04264;CON__P04264;CON__ENSEMBL:ENSBTAP00000038253 P04264 484 492 KRT1 Keratin, type II cytoskeletal 1 no no 2 7.1902E-18 154.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 9 9 10 7 7 0.026418 0.024529 104.07 51 Median 0.034951 0.033803 64.42 9 9 Median 0.024088 0.019957 70.393 9 9 Median 0.045318 0.045579 93.585 9 9 Median 0.022143 0.018842 143.85 10 10 Median 0.017459 0.01735 91.324 7 7 Median 0.016137 0.01322 86.312 7 7 Median 1812800000 1756100000 56662000 247250000 236350000 10903000 195550000 186480000 9070000 201940000 185360000 16575000 351430000 342570000 8860100 583690000 575600000 8083600 232940000 229770000 3170500 + 33520 1848;735 35235 175846;175847;175848;175849;175850;175851;175852;175853;175854;175855;175856;175857;175858;175859;175860;175861;175862;175863;175864;175865;175866;175867;175868;175869;175870;175871;175872;175873;175874;175875;175876;175877;175878;175879;175880;175881;175882;175883;175884;175885;175886;175887;175888;175889;175890;175891;175892;175893;175894;175895;175896 177683;177684;177685;177686;177687;177688;177689;177690;177691;177692;177693;177694;177695;177696;177697;177698;177699;177700;177701;177702;177703;177704;177705;177706;177707;177708;177709;177710;177711;177712;177713;177714;177715;177716;177717;177718;177719;177720;177721;177722;177723;177724;177725;177726;177727;177728;177729;177730;177731;177732;177733;177734;177735;177736;177737;177738;177739;177740;177741;177742;177743;177744;177745;177746;177747;177748;177749;177750 177685 68 TLLEILDGK EKSQNEQEAFRNNLKTLLEILDGKIFELTE FRNNLKTLLEILDGKIFELTELRDNLAKLL K T L G K I 0 0 0 1 0 0 1 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1000.5805 Q86YM7;Q86YM6 Q86YM7 328 336 HOMER1 Homer protein homolog 1 yes no 2 0.06063 28.174 By matching By MS/MS 1 1 1.2864 1.2454 12.427 2 Median NaN NaN NaN 0 0 Median 1.3105 1.1407 NaN 1 0 Median 1.2627 1.3598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4155100 1745300 2409800 0 0 0 740510 276570 463940 3414600 1468700 1945900 0 0 0 0 0 0 0 0 0 33521 3307 35236 175897;175898 177751;177752 177751 2 TLLELEK QLLQAGQPPDLERIRTLLELEKAERHGSRA PPDLERIRTLLELEKAERHGSRARGRALER R T L E K A 0 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 7 0 844.49058 P41229;E9PFH2;Q9BY66 P41229 1436 1442 KDM5C;KDM5D Lysine-specific demethylase 5C;Lysine-specific demethylase 5D yes no 2 0.024489 55.441 By MS/MS 1 1.4179 1.1956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4179 1.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2625600 1311800 1313900 0 0 0 0 0 0 0 0 0 2625600 1311800 1313900 0 0 0 0 0 0 33522 2299 35237 175899 177753 177753 1 TLLENTAITIGR LHQLVEIINRPNTPKTLLENTAITIGRLGY TPKTLLENTAITIGRLGYVCPQEVAPMLQQ K T L G R L 1 1 1 0 0 0 1 1 0 2 2 0 0 0 0 0 3 0 0 0 0 0 12 0 1300.7351 Q92973;S4R398 Q92973 774 785 TNPO1 Transportin-1 yes no 2 5.4886E-16 192.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 0.99625 0.93077 27.517 7 Median 0.98426 0.93077 13.154 3 0 Median 0.82289 0.71146 NaN 1 0 Median 0.99625 1.0559 NaN 1 0 Median 1.0374 0.89388 NaN 1 0 Median 1.6221 1.7155 NaN 1 0 Median NaN NaN NaN 0 0 Median 82795000 40001000 42794000 44819000 21243000 23576000 16151000 7990600 8160500 16757000 8667900 8088900 1933500 946510 987030 3135000 1152900 1982100 0 0 0 33523 3570 35238 175900;175901;175902;175903;175904;175905;175906 177754;177755;177756;177757;177758;177759;177760;177761;177762;177763 177756 9 TLLESER PRLADLEALKVADSKTLLESERERLFAKME ALKVADSKTLLESERERLFAKMEDTDFVGW K T L E R E 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 7 0 846.4447 O75792;A0A2R8Y658 O75792 70 76 RNASEH2A Ribonuclease H2 subunit A yes no 2 0.040736 44.721 By MS/MS 1 0.88149 0.73569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88149 0.73569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1801100 921950 879190 0 0 0 0 0 0 0 0 0 1801100 921950 879190 0 0 0 0 0 0 33524 1695 35239 175907 177764 177764 1 TLLESERER PRLADLEALKVADSKTLLESERERLFAKME KVADSKTLLESERERLFAKMEDTDFVGWAL K T L E R L 0 2 0 0 0 0 3 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 1 1131.5884 O75792;A0A2R8Y658 O75792 70 78 RNASEH2A Ribonuclease H2 subunit A yes no 2 0.042495 64.265 By MS/MS 1 1.1412 1.0649 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1412 1.0649 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1159500 504850 654690 0 0 0 0 0 0 0 0 0 1159500 504850 654690 0 0 0 0 0 0 33525 1695 35240 175908 177765 177765 1 TLLETLQK LHALGGDDFLGMLNRTLLETLQKAGFSEKF FLGMLNRTLLETLQKAGFSEKFLNEMIAPV R T L Q K A 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 8 0 944.55425 Q9UHG3;F8W8W4;C9JM55;C9K055;C9JGT6 Q9UHG3 198 205 PCYOX1 Prenylcysteine oxidase 1 yes no 2 0.0035475 89.55 By MS/MS By MS/MS By matching By matching 3 2 2 1 1.0911 1.0011 13.781 8 Median 1.0727 0.99507 13.757 3 1 Plateau 1.3975 1.1947 4.5632 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0413 1.0367 4.0766 2 0 Median 1.1368 0.96612 NaN 1 0 Median 45727000 20950000 24777000 22001000 10995000 11006000 20006000 8242400 11764000 0 0 0 0 0 0 3512600 1625000 1887600 207670 87735 119930 33526 4279 35241 175909;175910;175911;175912;175913;175914;175915;175916 177766;177767;177768;177769;177770;177771;177772 177768 7 TLLIDELNK EAEAERLLLIATGKRTLLIDELNKLKNEGP IATGKRTLLIDELNKLKNEGPQRKNKASPQ R T L N K L 0 0 1 1 0 0 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1057.6019 Q9NQW6;H7C1K5 Q9NQW6 771 779 ANLN Actin-binding protein anillin yes no 2 0.027065 51.346 By MS/MS 2 1.0804 1.1666 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0804 1.1666 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5872300 2664700 3207500 0 0 0 0 0 0 5872300 2664700 3207500 0 0 0 0 0 0 0 0 0 33527 4069 35242 175917;175918 177773;177774 177773 2 TLLISSLSPALPAEHLEDR EPACPGSSAAAPEYKTLLISSLSPALPAEH SSLSPALPAEHLEDRLFHQFKRFGEISLRL K T L D R L 2 1 0 1 0 0 2 0 1 1 5 0 0 0 2 3 1 0 0 0 0 0 19 0 2061.1106 Q8NDT2 Q8NDT2 140 158 RBM15B Putative RNA-binding protein 15B yes yes 3 0.0040638 25.186 By MS/MS 1 0.63137 0.67105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63137 0.67105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8333200 5278200 3055000 0 0 0 0 0 0 8333200 5278200 3055000 0 0 0 0 0 0 0 0 0 33528 3424 35243 175919 177775;177776 177776 2 TLLKEDPAYWFLSDENSLEYK LVKRVIEGSLSPKERTLLKEDPAYWFLSDE PAYWFLSDENSLEYKYYKLKLAEMQRMSEN R T L Y K Y 1 0 1 2 0 0 3 0 0 0 4 2 0 1 1 2 1 1 2 0 0 0 21 1 2560.2373 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 622 642 SUGP2 SURP and G-patch domain-containing protein 2 yes no 3 0.030085 13.731 By matching By MS/MS By MS/MS 1 1 1 0.78398 0.8935 16.405 3 Plateau NaN NaN NaN 0 0 Median 0.78398 0.67834 NaN 1 0 Median 0.732 0.83462 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8386 0.9378 NaN 1 0 Median NaN NaN NaN 0 0 Median 2086000 1109800 976140 0 0 0 194240 118130 76106 900240 454840 445400 0 0 0 991510 536880 454630 0 0 0 33529 1437 35244 175920;175921;175922 177777;177778 177778 2 TLLLDGNPFR LLQIPPELGNCVNLRTLLLDGNPFRVPRAA CVNLRTLLLDGNPFRVPRAAILMKGTAAIL R T L F R V 0 1 1 1 0 0 0 1 0 0 3 0 0 1 1 0 1 0 0 0 0 0 10 0 1144.6241 Q9H9A6 Q9H9A6 569 578 LRRC40 Leucine-rich repeat-containing protein 40 yes yes 2 0.0070645 49.418 By MS/MS By MS/MS 1 1 0.77256 0.79307 7.2383 2 Median 0.76066 0.7535 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78465 0.83472 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6171600 3492400 2679300 3222300 1831800 1390400 0 0 0 2949300 1660500 1288800 0 0 0 0 0 0 0 0 0 33530 3996 35245 175923;175924 177779;177780 177779 2 TLLLGDNQLSQLSPHVGALR LEALPEELFFCRKLRTLLLGDNQLSQLSPH DNQLSQLSPHVGALRALSRLELKGNRLEAL R T L L R A 1 1 1 1 0 2 0 2 1 0 6 0 0 0 1 2 1 0 0 1 0 0 20 0 2131.175 Q6NSJ5 Q6NSJ5 726 745 LRRC8E Volume-regulated anion channel subunit LRRC8E yes yes 3 0.00041538 30.428 By MS/MS 1 0.95638 0.80302 NaN 1 Median NaN NaN NaN 0 0 Median 0.95638 0.80302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1819500 961340 858150 0 0 0 1819500 961340 858150 0 0 0 0 0 0 0 0 0 0 0 0 33531 3142 35246 175925 177781 177781 1 TLLMENAER VETLCKITEYQHEARTLLMENAERVGNRGR YQHEARTLLMENAERVGNRGRIICITNAKS R T L E R V 1 1 1 0 0 0 2 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 9 0 1075.5332 Q9NVM9;F8VRX9;F5H5W1;F5H457 Q9NVM9 145 153 ASUN Protein asunder homolog yes no 2 0.00027579 113.71 By MS/MS By MS/MS 2 1 1.212 1.1356 9.7651 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1941 1.2168 NaN 1 1 Median 1.2302 1.0599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12338000 5191000 7146500 0 0 0 0 0 0 10740000 4560500 6179400 1597600 630520 967070 0 0 0 0 0 0 33532 4136 35247 175926;175927;175928 177782;177783;177784 177782 3 TLLPEDSQKLDNFLGEVR VYDTTIRTGRALKEKTLLPEDSQKLDNFLG PEDSQKLDNFLGEVRDKWDTVCGKSVERQH K T L V R D 0 1 1 2 0 1 2 1 0 0 4 1 0 1 1 1 1 0 0 1 0 0 18 1 2073.0742 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 6723 6740 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 6.6841E-07 82.248 By MS/MS 2 1.0421 1.0764 NaN 1 Median 1.0421 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6847600 4587900 2259700 6847600 4587900 2259700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33533 1220 35248 175929;175930 177785;177786 177785 2 TLLQHVAQSQTATQTSVVVK VSHRSQPQQPSQPQRTLLQHVAQSQTATQT VAQSQTATQTSVVVKSIPASSPGAITHIMQ R T L V K S 2 0 0 0 0 4 0 0 1 0 2 1 0 0 0 2 4 0 0 4 0 0 20 0 2138.1695 E9PMC9;Q7Z589;H0YCS3;H0YET8 E9PMC9 770 789 C11orf30;EMSY Protein EMSY yes no 3 1.4446E-10 87.352 By MS/MS By matching 1 2 1.0528 0.95418 4.5094 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92769 0.99 NaN 1 0 Median 1.0663 0.92929 3.7378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16748000 9060600 7687200 0 0 0 0 0 0 15349000 8352700 6996100 1398900 707840 691040 0 0 0 0 0 0 33534 966 35249 175931;175932;175933 177787;177788 177788 2 TLLQQNQQLK FMLQAKVSELKNNMKTLLQQNQQLKLDLRR KNNMKTLLQQNQQLKLDLRRGAAKTRKEPK K T L L K L 0 0 1 0 0 4 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1212.6826 Q08378;A0A087WV43 Q08378 1362 1371 GOLGA3 Golgin subfamily A member 3 yes no 2 0.0016573 63.565 By MS/MS 1 1.2463 1.0968 NaN 1 Median NaN NaN NaN 0 0 Median 1.2463 1.0968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1647700 736950 910790 0 0 0 1647700 736950 910790 0 0 0 0 0 0 0 0 0 0 0 0 33535 2738 35250 175934 177789 177789 1 TLLSDPTYR MPNLYQKLESDPRTRTLLSDPTYRELIEQL SDPRTRTLLSDPTYRELIEQLRNKPSDLGT R T L Y R E 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 9 0 1064.5502 P31948;F5H783 P31948 145 153 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.00039751 133.55 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 1 1.1053 1.0404 20.661 9 Median 1.1053 1.0404 8.3498 3 0 Median 1.0653 0.89714 32.723 3 0 Median 1.2059 1.2234 10.139 2 0 Median 0.98492 0.82616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 333500000 155880000 177610000 175950000 83751000 92198000 128910000 59609000 69300000 21916000 9243000 12673000 6722500 3279600 3442900 0 0 0 0 0 0 33536 2212 35251 175935;175936;175937;175938;175939;175940;175941;175942;175943 177790;177791;177792;177793;177794;177795;177796;177797;177798;177799;177800;177801;177802 177791 13 TLLSDPTYRELIEQLR MPNLYQKLESDPRTRTLLSDPTYRELIEQL LLSDPTYRELIEQLRNKPSDLGTKLQDPRI R T L L R N 0 2 0 1 0 1 2 0 0 1 4 0 0 0 1 1 2 0 1 0 0 0 16 1 1946.0473 P31948;F5H783 P31948 145 160 STIP1 Stress-induced-phosphoprotein 1 yes no 3 4.1928E-05 64.675 By MS/MS 1 1.1307 1.114 NaN 1 Median 1.1307 1.114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15597000 7557200 8039900 15597000 7557200 8039900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33537 2212 35252 175944 177803 177803 1 TLLSVPGYK AISDIEVDKKELTGRTLLSVPGYKEKVEFG KELTGRTLLSVPGYKEKVEFGVLVSFAYKV R T L Y K E 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 1 1 0 1 1 0 0 9 0 976.55933 P26640;A0A140T936 P26640 499 507 VARS Valine--tRNA ligase yes no 2 0.0073226 51.854 By MS/MS 2 1.3273 1.156 21.411 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3273 1.156 21.411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2644100 1200500 1443600 0 0 0 0 0 0 0 0 0 2644100 1200500 1443600 0 0 0 0 0 0 33538 2148 35253 175945;175946 177804 177804 1 TLLTGDGGGEATGSPLAQGK QELNNRLAAEITRLRTLLTGDGGGEATGSP DGGGEATGSPLAQGKDAYELEVLLRVKESE R T L G K D 2 0 0 1 0 1 1 6 0 0 3 1 0 0 1 1 3 0 0 0 0 0 20 0 1828.9167 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9;H0Y7E2 A0A494BZV2 2265 2284 MPRIP Myosin phosphatase Rho-interacting protein yes no 2 3.4832E-18 134.21 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.70256 0.67664 24.391 4 Median NaN NaN NaN 0 0 Median 0.78636 0.71064 NaN 1 0 Median 0.55825 0.59791 NaN 1 0 Median 1.2134 1.0356 NaN 1 0 Median 0.62768 0.64427 NaN 1 1 Median NaN NaN NaN 0 0 Median 12222000 7176700 5045100 0 0 0 425380 198460 226920 8073100 4895000 3178000 2482100 1074400 1407700 1241200 1008800 232410 0 0 0 33539 453 35254 175947;175948;175949;175950 177805;177806;177807;177808 177805 4 TLLVADPR ASKKEIKDILIQYDRTLLVADPRRCESKKF ILIQYDRTLLVADPRRCESKKFGGPGARAR R T L P R R 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 0 883.51272 P62249;M0R210 P62249 118 125 RPS16 40S ribosomal protein S16 yes no 2 0.0074447 67.032 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 0.97842 0.86606 58.872 8 Median 0.7123 0.67934 37.026 2 0 Median 1.0272 0.84977 NaN 1 0 Median 1.0043 1.0144 NaN 1 0 Median 1.0639 0.85912 19.161 2 1 Median NaN NaN NaN 0 0 Median 0.5032 0.40182 117.47 2 0 Median 291460000 144540000 146920000 141790000 72480000 69309000 104090000 50017000 54072000 35852000 16995000 18857000 5263800 2489000 2774800 0 0 0 4461300 2554600 1906700 33540 2574 35255 175951;175952;175953;175954;175955;175956;175957;175958 177809;177810;177811;177812;177813;177814;177815;177816;177817;177818;177819;177820;177821 177812 13 TLLVADPRR ASKKEIKDILIQYDRTLLVADPRRCESKKF LIQYDRTLLVADPRRCESKKFGGPGARARY R T L R R C 1 2 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 9 1 1039.6138 P62249;M0R210 P62249 118 126 RPS16 40S ribosomal protein S16 yes no 2 0.00038894 95.531 By MS/MS 1 0.88427 0.92687 NaN 1 Median 0.88427 0.92687 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7340700 3276300 4064400 7340700 3276300 4064400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33541 2574 35256 175959 177822;177823 177823 2 TLLVNNNR EIRKLDGFPLLRRLKTLLVNNNRICRIGEG PLLRRLKTLLVNNNRICRIGEGLDQALPCL K T L N R I 0 1 3 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 942.52468 P09661;H0YKK0 P09661 68 75 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 2 0.0029333 103.29 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 2 1.1377 0.99348 8.5946 7 Median 1.2665 1.1945 NaN 1 0 Median 1.1443 0.97239 NaN 1 0 Median 1.0513 1.0099 NaN 1 0 Median 1.1377 0.9416 NaN 1 0 Median 1.0086 1.0188 3.5647 2 0 Median 1.1405 0.92147 NaN 1 0 Median 35991000 16779000 19212000 2627700 1133500 1494100 1609600 695550 914020 15244000 6831800 8412000 1907000 961520 945530 11523000 5757800 5765000 3080000 1398700 1681300 33542 1920 35257 175960;175961;175962;175963;175964;175965;175966;175967 177824;177825;177826;177827;177828;177829;177830;177831 177824 8 TLLVSTSAVDNNEAQK TKTVYNPAALKAAQKTLLVSTSAVDNNEAQ LLVSTSAVDNNEAQKKKQEALKLQQDVRKR K T L Q K K 2 0 2 1 0 1 1 0 0 0 2 1 0 0 0 2 2 0 0 2 0 0 16 0 1688.8581 Q5T8P6 Q5T8P6 710 725 RBM26 RNA-binding protein 26 no no 2 3.0086E-08 135.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1.1084 0.98044 11.88 5 Median 1.2048 1.1687 NaN 1 1 Median 1.1781 1.0367 NaN 1 0 Median 0.91988 0.98044 NaN 1 0 Median 1.0438 0.89202 7.051 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38892000 18869000 20023000 8044900 3608100 4436800 1795900 787860 1008000 21822000 11249000 10573000 7229400 3223900 4005500 0 0 0 0 0 0 33543 3097 35258 175968;175969;175970;175971;175972 177832;177833;177834;177835;177836;177837 177836 6 TLLVSTSAVDNNEAQKK TKTVYNPAALKAAQKTLLVSTSAVDNNEAQ LVSTSAVDNNEAQKKKQEALKLQQDVRKRK K T L K K K 2 0 2 1 0 1 1 0 0 0 2 2 0 0 0 2 2 0 0 2 0 0 17 1 1816.9531 Q5T8P6 Q5T8P6 710 726 RBM26 RNA-binding protein 26 no no 3 4.0575E-08 73.279 By MS/MS By matching By MS/MS By matching 1 1 2 1 0.95432 1.0292 9.0164 5 Median 0.97266 1.0292 NaN 1 0 Median 0.9484 0.88867 NaN 1 0 Median 0.87633 1.0109 12.128 2 2 Median 1.1847 1.0549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21534000 11764000 9770100 1842300 923550 918780 1503200 793850 709320 16875000 9455000 7420400 1313500 591920 721570 0 0 0 0 0 0 33544 3097 35259 175973;175974;175975;175976;175977 177838;177839;177840 177839 3 TLLVYDMNLR RMLSTLSQCEFSMGKTLLVYDMNLREMENY FSMGKTLLVYDMNLREMENYEKIYKEIECS K T L L R E 0 1 1 1 0 0 0 0 0 0 3 0 1 0 0 0 1 0 1 1 0 0 10 0 1236.6536 Q6I9Y2;A0A024R341;F8WF22 Q6I9Y2 67 76 THOC7;NIF3L1BP1 THO complex subunit 7 homolog yes no 2 0.0015543 69.954 By MS/MS By matching By MS/MS 1 1 1 1.1378 0.92358 4.2355 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95073 0.91309 NaN 1 0 Median 1.1918 0.98756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1378 0.92358 NaN 1 0 Median 28513000 13926000 14587000 0 0 0 0 0 0 24495000 12164000 12331000 2806700 1275400 1531300 0 0 0 1210700 486400 724320 33545 3136 35260;35261 175978;175979;175980 177841;177842;177843 177841 1666 3 TLLWTELFR DPEMDMKSVTDRAARTLLWTELFRGLGMTL TDRAARTLLWTELFRGLGMTLSYLFREPAT R T L F R G 0 1 0 0 0 0 1 0 0 0 3 0 0 1 0 0 2 1 0 0 0 0 9 0 1177.6495 E9PN51;F8W9K7;E9PPW7;O00217;E9PKH6 E9PN51 58 66 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes no 2 0.039605 33.797 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 2 1.335 1.1612 19.277 8 Median 1.015 0.98079 1.6563 2 0 Median 1.772 1.4974 8.5614 2 0 Median 0.91159 0.92953 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2498 1.3174 NaN 1 0 Median 1.4686 1.1612 3.7487 2 0 Median 10063000 4701400 5361300 8187000 3978000 4209000 1165700 413860 751830 63417 31502 31916 0 0 0 480780 219300 261490 165810 58745 107060 33546 971 35262 175981;175982;175983;175984;175985;175986;175987;175988 177844;177845;177846 177844 3 TLLYNPFPPTNESDVIR MFCIIDKSLPLPNDKTLLYNPFPPTNESDV LYNPFPPTNESDVIRRRTAHAFKISKIYKP K T L I R R 0 1 2 1 0 0 1 0 0 1 2 0 0 1 3 1 2 0 1 1 0 0 17 0 1975.0051 H3BSH7;Q969X6;A0A0J9YWM9;A0A0J9YXV4 H3BSH7 632 648 CIRH1A Cirhin yes no 2 0.00025729 46.592 By MS/MS By matching By MS/MS 1 1 4 0.64314 0.6795 13.164 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60602 0.6443 NaN 1 0 Median 0.96661 0.83264 NaN 1 0 Median 0.64314 0.67118 11.798 4 0 Median NaN NaN NaN 0 0 Median 5410000 3040200 2369700 0 0 0 0 0 0 1992300 1120700 871570 213340 95003 118340 3204400 1824500 1379800 0 0 0 33547 1234 35263 175989;175990;175991;175992;175993;175994 177847;177848;177849;177850 177847 4 TLMAQSIYGGR RQNISPDKIPWSALKTLMAQSIYGGRVDNE SALKTLMAQSIYGGRVDNEFDQRLLNTFLE K T L G R V 1 1 0 0 0 1 0 2 0 1 1 0 1 0 0 1 1 0 1 0 0 0 11 0 1195.6019 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4245 4255 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 1.7953E-27 176.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 2 1.1229 1.1074 11.91 6 Median 1.0248 0.98944 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0503 1.1074 2.6251 2 1 Median 1.2263 1.0687 8.0512 2 0 Median NaN NaN NaN 0 0 Median 1.8544 1.3811 NaN 1 0 Median 276490000 116420000 160060000 59231000 34680000 24551000 0 0 0 104760000 44789000 59975000 18469000 8471200 9998000 0 0 0 94023000 28484000 65540000 33548 2865 35264;35265 175995;175996;175997;175998;175999;176000;176001;176002;176003 177851;177852;177853;177854;177855;177856;177857;177858;177859;177860;177861;177862 177853 1562 12 TLMEALVASYLIKPEVQVR SMMVGAYSTLEGAQRTLMEALVASYLIKPE ALVASYLIKPEVQVRQVAVKFASTVFPSDH R T L V R Q 2 1 0 0 0 1 2 0 0 1 3 1 1 0 1 1 1 0 1 3 0 0 19 1 2159.2024 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 479 497 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 0.00070513 30.956 By MS/MS By matching 1 1 0.99082 0.98065 5.4747 2 Median 0.99577 1.0194 NaN 1 0 Median 0.98589 0.94341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2554400 1231500 1322900 1184800 597020 587780 1369600 634490 735140 0 0 0 0 0 0 0 0 0 0 0 0 33549 3116 35266 176004;176005 177863;177864 177864 2 TLMELLNQMDGFDTLHR RRFSEGTSADREIQRTLMELLNQMDGFDTL MELLNQMDGFDTLHRVKMIMATNRPDTLDP R T L H R V 0 1 1 2 0 1 1 1 1 0 4 0 2 1 0 0 2 0 0 0 0 0 17 0 2032.971 A0A087X2I1;P62333 A0A087X2I1 270 286 PSMC6 26S protease regulatory subunit 10B yes no 2;3 4.1324E-12 136.7 By MS/MS By matching 2 1 1.2347 1.0769 26.261 3 Median NaN NaN NaN 0 0 Median 1.2033 1.0483 3.8078 2 0 Median 1.6205 1.6481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57560000 25763000 31798000 0 0 0 57091000 25594000 31497000 469290 168380 300900 0 0 0 0 0 0 0 0 0 33550 138 35267 176006;176007;176008 177865;177866;177867;177868 177868 4 TLMESNKLETIR SETSNKIDAEIASLKTLMESNKLETIRYLA SLKTLMESNKLETIRYLAASVFTCLAIALG K T L I R Y 0 1 1 0 0 0 2 0 0 1 2 1 1 0 0 1 2 0 0 0 0 0 12 1 1433.7548 Q9GZT6 Q9GZT6 222 233 CCDC90B Coiled-coil domain-containing protein 90B, mitochondrial yes yes 3 0.00037683 56.122 By MS/MS 1 0.78227 0.81999 NaN 1 Median 0.78227 0.81999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5524800 3318500 2206300 5524800 3318500 2206300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33551 3915 35268 176009 177869 177869 1 TLMIQLLR LMETMKQPFLPGEVKTLMIQLLRGVKHLHD FLPGEVKTLMIQLLRGVKHLHDNWILHRDL K T L L R G 0 1 0 0 0 1 0 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 8 0 986.59467 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 492 499 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2 0.010267 59.205 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1 1.3007 1.2904 16.499 7 Median 1.2573 1.4291 NaN 1 0 Median 1.0679 0.92539 NaN 1 0 Median 1.2027 1.2904 NaN 1 0 Median 1.3461 1.1747 2.7918 2 0 Median 1.3007 1.3828 NaN 1 0 Median 1.8108 1.5089 NaN 1 0 Median 9316500 4353300 4963200 891160 404390 486770 2843500 1465300 1378300 2787000 1302000 1484900 695690 312380 383310 2017600 841330 1176300 81528 27877 53650 33552 259 35269 176010;176011;176012;176013;176014;176015;176016 177870;177871;177872 177871 3 TLMMNTLYK NPFGETFGKIQESEKTLMMNTLYKLHDRLA IQESEKTLMMNTLYKLHDRLAQLAGDHECG K T L Y K L 0 0 1 0 0 0 0 0 0 0 2 1 2 0 0 0 2 0 1 0 0 0 9 0 1113.5562 Q9Y2U8 Q9Y2U8 525 533 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 0.0078737 50.607 By MS/MS 2 5.6298 6.0275 241.45 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5.6298 6.0275 241.45 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15634000 4058400 11576000 0 0 0 0 0 0 15634000 4058400 11576000 0 0 0 0 0 0 0 0 0 33553 4392 35270 176017;176018 177873;177874 177873 2 TLMNLGGLAVAR TVDLWEGKNMACVQRTLMNLGGLAVARDDG VQRTLMNLGGLAVARDDGLFSGDPNWFPKK R T L A R D 2 1 1 0 0 0 0 2 0 0 3 0 1 0 0 0 1 0 0 1 0 0 12 0 1214.6805 P37802;X6RJP6 P37802 128 139 TAGLN2 Transgelin-2 yes no 2 3.2763E-06 136.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 6 5 3 5 1 1.2227 1.0955 32.187 26 Median 1.0822 1.0313 14.11 6 0 Median 1.1888 1.0058 47.662 6 0 Median 1.2227 1.1733 15.741 5 2 Median 1.31 1.1011 4.9653 3 0 Median 1.5264 1.5908 19.54 5 1 Median 1.2402 1.0066 NaN 1 0 Median 1549200000 689050000 860130000 1109000000 493510000 615450000 188590000 84424000 104170000 215840000 95793000 120040000 17337000 7783700 9553000 17261000 6998300 10262000 1190100 545130 644980 33554 2269 35271;35272 176019;176020;176021;176022;176023;176024;176025;176026;176027;176028;176029;176030;176031;176032;176033;176034;176035;176036;176037;176038;176039;176040;176041;176042;176043;176044 177875;177876;177877;177878;177879;177880;177881;177882;177883;177884;177885;177886;177887;177888;177889;177890;177891;177892;177893;177894;177895;177896;177897;177898;177899;177900;177901;177902;177903;177904;177905;177906;177907;177908;177909;177910;177911;177912;177913;177914;177915 177877 1019 41 TLMNTIMQLR TDGSEKDKKGKGGTKTLMNTIMQLRKICNH KGGTKTLMNTIMQLRKICNHPYMFQHIEES K T L L R K 0 1 1 0 0 1 0 0 0 1 2 0 2 0 0 0 2 0 0 0 0 0 10 0 1219.6417 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6;P51531;F6VDE0;A0A0U1RQZ9 P51532 1034 1043 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00010414 114.93 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 4 2 3 1.0169 1.0944 24.302 9 Median 2.0483 2.0376 NaN 1 0 Median 1.2018 1.021 NaN 1 0 Median 1.0169 1.1085 1.2485 3 0 Plateau 1.4512 1.2835 6.3869 2 0 Median 0.88567 0.93115 8.5411 2 1 Median NaN NaN NaN 0 0 Median 53559000 25868000 27690000 490490 158750 331740 890900 398020 492870 47669000 23211000 24457000 2483300 1040700 1442600 2025600 1059900 965740 0 0 0 33555 366;2433 35273;35274;35275 176045;176046;176047;176048;176049;176050;176051;176052;176053;176054;176055 177916;177917;177918;177919;177920;177921;177922;177923 177923 173;174 8 TLMSSGQMAPSSSNK ADMQDHAPAIGRYIRTLMSSGQMAPSSSNK TLMSSGQMAPSSSNKSGETNPVQIYIGLLQ R T L N K S 1 0 1 0 0 1 0 1 0 0 1 1 2 0 1 5 1 0 0 0 0 0 15 0 1524.6912 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 632 646 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 4.6777E-06 87.001 By MS/MS By MS/MS 1 2 0.82218 0.78947 22.014 3 Median 0.82218 0.78947 NaN 1 0 Median 0.82147 0.72549 30.358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11485000 6057300 5428100 5152800 2880800 2272000 6332500 3176400 3156100 0 0 0 0 0 0 0 0 0 0 0 0 33556 3116 35276 176056;176057;176058 177924;177925;177926;177927;177928 177927 5 TLNDELEIIEGMK KKVGRKGVITVKDGKTLNDELEIIEGMKFD GKTLNDELEIIEGMKFDRGYISPYFINTSK K T L M K F 0 0 1 1 0 0 3 1 0 2 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1503.7491 P10809;E7ESH4;E7EXB4 P10809 206 218 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 3.7264E-41 218.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 3 3 1 2 1.2312 1.0963 32.328 20 Median 1.1501 1.0802 49.129 6 3 Median 1.2632 1.0771 8.3512 5 0 Median 1.0598 0.93693 21.001 3 1 Plateau 1.5329 1.3177 5.6832 3 0 Median 1.9077 1.8227 NaN 1 0 Median 1.6665 1.3888 0.34095 2 0 Median 1536100000 697560000 838530000 1182500000 547050000 635420000 288750000 120870000 167890000 54700000 26047000 28653000 2355900 892690 1463200 2793300 878480 1914900 5024600 1829600 3194900 33557 1947 35277;35278 176059;176060;176061;176062;176063;176064;176065;176066;176067;176068;176069;176070;176071;176072;176073;176074;176075;176076;176077;176078 177929;177930;177931;177932;177933;177934;177935;177936;177937;177938;177939;177940;177941;177942;177943;177944;177945;177946;177947;177948;177949;177950;177951;177952;177953;177954;177955;177956 177944 722 28 TLNDELEIIEGMKFDR KKVGRKGVITVKDGKTLNDELEIIEGMKFD LNDELEIIEGMKFDRGYISPYFINTSKGQK K T L D R G 0 1 1 2 0 0 3 1 0 2 2 1 1 1 0 0 1 0 0 0 0 0 16 1 1921.9455 P10809;E7ESH4;E7EXB4 P10809 206 221 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2;3 0.00021393 56.225 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 2 1 1.2243 1.2237 27.297 7 Median 1.1377 1.139 10.147 2 0 Median 1.2306 1.1244 NaN 1 0 Median 1.2238 1.3656 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3504 1.4523 57.417 2 0 Median 1.672 1.5185 NaN 1 0 Median 101290000 45808000 55481000 87996000 40828000 47168000 6301400 2359600 3941800 3275500 1381600 1893900 0 0 0 1524200 546100 978130 2191600 692140 1499400 33558 1947 35279 176079;176080;176081;176082;176083;176084;176085 177957;177958;177959;177960;177961;177962;177963;177964;177965 177957 9 TLNDMRQEYEQLIAK VNVEINVAPGKDLTKTLNDMRQEYEQLIAK TLNDMRQEYEQLIAKNRKDIENQYETQITQ K T L A K N 1 1 1 1 0 2 2 0 0 1 2 1 1 0 0 0 1 0 1 0 0 0 15 1 1850.9196 P35527;CON__P35527;K7EQQ3 P35527 322 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 1.8222E-06 89.805 By MS/MS By MS/MS By MS/MS By MS/MS 6 1 5 6 0.03235 0.034534 99.066 12 Median 0.054289 0.055407 107.25 4 4 Median 0.099402 0.092794 NaN 1 1 Median 0.020193 0.02383 83.498 4 4 Median NaN NaN NaN 0 0 Median 0.025425 0.026109 118.17 3 3 Median NaN NaN NaN 0 0 Median 292300000 287830000 4469200 159600000 156930000 2672700 1294800 1246600 48289 62599000 61399000 1199900 0 0 0 68801000 68253000 548340 0 0 0 + 33559 2242 35280;35281 176086;176087;176088;176089;176090;176091;176092;176093;176094;176095;176096;176097;176098;176099;176100;176101;176102;176103 177966;177967;177968;177969;177970;177971;177972;177973;177974;177975;177976;177977;177978;177979;177980;177981;177982;177983;177984;177985 177972 981 20 TLNEWDSR VMTGANGEVSFINIKTLNEWDSRHCNGVDW VSFINIKTLNEWDSRHCNGVDWRQKLDSQR K T L S R H 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 8 0 1019.4672 O15371 O15371 395 402 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2 0.0063783 71.501 By MS/MS By MS/MS By MS/MS 1 1 1 1.2759 1.2154 14.028 3 Median 1.2759 1.2154 NaN 1 0 Median 1.1784 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6042 1.3441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27993000 12279000 15714000 10534000 4439600 6094700 16647000 7555500 9091200 0 0 0 811940 284120 527820 0 0 0 0 0 0 33560 1540 35282 176104;176105;176106 177986;177987;177988 177987 3 TLNEWSSQINPDLVR CPSTHSEELHDCIQKTLNEWSSQINPDLVR TLNEWSSQINPDLVREFPDVLECTVSHAVE K T L V R E 0 1 2 1 0 1 1 0 0 1 2 0 0 0 1 2 1 1 0 1 0 0 15 0 1770.8901 P48507 P48507 50 64 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 2 3.1368E-09 99.215 By MS/MS By matching 1 1 0.9038 0.80794 14.283 2 Median 0.95753 0.8938 NaN 1 0 Median 0.85309 0.73032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8200700 4113300 4087400 7596500 3812200 3784300 604140 301090 303050 0 0 0 0 0 0 0 0 0 0 0 0 33561 2361 35283 176107;176108 177989;177990 177990 2 TLNFEDQTSTDNVSITK LALSSKEENVQEDPKTLNFEDQTSTDNVSI NFEDQTSTDNVSITKDSSKEVAPEEKTQVK K T L T K D 0 0 2 2 0 1 1 0 0 1 1 1 0 1 0 2 4 0 0 1 0 0 17 0 1911.9062 G3V1X1;O60293 G3V1X1 263 279 ZFC3H1 Zinc finger C3H1 domain-containing protein yes no 2 1.4076E-06 86.028 By matching By MS/MS 1 1 1.2141 1.1958 2.2277 2 Median NaN NaN NaN 0 0 Median 1.3949 1.2148 NaN 1 0 Median 1.0568 1.1771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5228900 2245300 2983600 0 0 0 377380 163680 213690 4851500 2081600 2769900 0 0 0 0 0 0 0 0 0 33562 1105 35284 176109;176110 177991;177992 177992 2 TLNHQYDYTFDWTMLK PDYMYLRQLFRILFRTLNHQYDYTFDWTML LNHQYDYTFDWTMLKQKAAQQAASSSGQGQ R T L L K Q 0 0 1 2 0 1 0 0 1 0 2 1 1 1 0 0 3 1 2 0 0 0 16 0 2074.9459 U3KPX3;A0A590UJ43;P48729;D6REM4;E7ETM0;H0Y9X2;U3KQK7;Q8N752 U3KPX3 318 333 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 3 0.0022562 28.956 By MS/MS 1 1.0289 0.99434 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0289 0.99434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1634500 905510 729040 0 0 0 0 0 0 1634500 905510 729040 0 0 0 0 0 0 0 0 0 33563 481 35285 176111 177993 177993 1 TLNNDLGPNWR VRQSADFMPLKQMMKTLNNDLGPNWRDKLE QMMKTLNNDLGPNWRDKLEYFEERPFAAAS K T L W R D 0 1 3 1 0 0 0 1 0 0 2 0 0 0 1 0 1 1 0 0 0 0 11 0 1298.6367 Q8NI60 Q8NI60 315 325 ADCK3 Atypical kinase ADCK3, mitochondrial yes yes 2 0.00017857 78.334 By MS/MS 1 1.0083 1.0108 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0083 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5583300 2870100 2713200 0 0 0 0 0 0 5583300 2870100 2713200 0 0 0 0 0 0 0 0 0 33564 3449 35286 176112 177994;177995 177995 2 TLNQLGTPQDSPELR SNIQKITQCSVEIQRTLNQLGTPQDSPELR TLNQLGTPQDSPELRQQLQQKQQYTNQLAK R T L L R Q 0 1 1 1 0 2 1 1 0 0 3 0 0 0 2 1 2 0 0 0 0 0 15 0 1667.8479 O15400 O15400 35 49 STX7 Syntaxin-7 yes yes 2 6.6985E-10 127.87 By MS/MS By MS/MS By MS/MS 1 1 1 0.74334 0.69495 12.903 3 Median 0.74334 0.69495 NaN 1 0 Median 0.96904 0.80595 NaN 1 0 Median 0.6307 0.62326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43812000 23259000 20553000 31530000 16660000 14870000 8716300 4396200 4320100 3566300 2202800 1363500 0 0 0 0 0 0 0 0 0 33565 1546 35287 176113;176114;176115 177996;177997;177998;177999;178000 177999 5 TLNQQLTNHIR YRHMADRMGTPHLQKTLNQQLTNHIRESLP HLQKTLNQQLTNHIRESLPALRSKLQSQLL K T L I R E 0 1 2 0 0 2 0 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 11 0 1336.7211 P50570 P50570 280 290 DNM2 Dynamin-2 no no 2;3 4.6594E-15 188.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 4 2 5 1.0639 0.94471 27.663 16 Median 0.88527 0.85449 1.174 2 1 Median 0.71698 0.62247 27.706 2 1 Median 1.0463 1.1087 4.9019 2 0 Median 1.2559 1.0662 20.001 3 1 Plateau 1.4266 1.4838 16.817 2 0 Median 1.2411 1.0053 16.224 5 2 Median 94414000 43932000 50482000 15276000 7982500 7293500 4352900 2536700 1816300 42309000 19663000 22647000 10965000 4737300 6227500 9427200 3196900 6230300 12084000 5815900 6267900 33566 2417 35288 176116;176117;176118;176119;176120;176121;176122;176123;176124;176125;176126;176127;176128;176129;176130;176131;176132 178001;178002;178003;178004;178005;178006;178007;178008;178009;178010;178011;178012;178013;178014;178015;178016 178001 16 TLNVESNFISGAGILR AYALAEMLKENKVLKTLNVESNFISGAGIL LNVESNFISGAGILRLVEALPYNTSLVEMK K T L L R L 1 1 2 0 0 0 1 2 0 2 2 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 P28289 P28289 256 271 TMOD1 Tropomodulin-1 yes yes 2 0.00034546 48.004 By matching By MS/MS 1 1 0.75218 0.78159 11.35 2 Median 0.7043 0.72131 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80332 0.8469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1860800 1053100 807640 772120 493840 278280 0 0 0 1088600 559270 529370 0 0 0 0 0 0 0 0 0 33567 2164 35289 176133;176134 178017 178017 1 TLPADVQNYYSR DRSGWTSASSWAVRKTLPADVQNYYSRRGR VRKTLPADVQNYYSRRGRNSSGPQSGWMKQ K T L S R R 1 1 1 1 0 1 0 0 0 0 1 0 0 0 1 1 1 0 2 1 0 0 12 0 1425.6888 F8VXG7;Q99590 F8VXG7 961 972 SCAF11 Protein SCAF11 yes no 2 1.963E-07 121.83 By MS/MS 1 0.76181 0.7925 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76181 0.7925 NaN 1 1 Median NaN NaN NaN 0 0 Median 6206400 3054800 3151600 0 0 0 0 0 0 0 0 0 0 0 0 6206400 3054800 3151600 0 0 0 33568 1072 35290 176135 178018 178018 1 TLPAHSDPVSAVHFNR ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR K T L N R D 2 1 1 1 0 0 0 0 2 0 1 0 0 1 2 2 1 0 0 2 0 0 16 0 1746.8802 P61964 P61964 166 181 WDR5 WD repeat-containing protein 5 yes yes 3;4 4.819E-07 88.507 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 2 4 2 2 0.81517 0.79148 9.5422 12 Median 0.83449 0.83177 9.4025 2 0 Median 0.9166 0.78837 11.73 2 0 Median 0.71846 0.72157 7.9223 4 0 Median 0.91708 0.77835 6.4211 2 0 Median 0.85915 0.8706 8.0242 2 0 Median NaN NaN NaN 0 0 Median 170230000 92808000 77425000 30434000 17178000 13255000 5455800 2735900 2719800 114580000 63091000 51489000 14198000 6821800 7376300 5565600 2981200 2584400 0 0 0 33569 2564 35291 176136;176137;176138;176139;176140;176141;176142;176143;176144;176145;176146;176147 178019;178020;178021;178022;178023;178024;178025;178026;178027;178028;178029;178030;178031;178032;178033 178024 14 TLPDEVLTK IVRERAIKFLSTKLKTLPDEVLTKEVEELI LSTKLKTLPDEVLTKEVEELILTESKKVLE K T L T K E 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 0 2 0 0 1 0 0 9 0 1014.5597 G3V1C3;Q9BZZ5;H0YER7 G3V1C3 161 169 API5 Apoptosis inhibitor 5 yes no 2 0.00073393 101.43 By MS/MS By MS/MS By MS/MS 1 3 2 0.98591 0.86043 12.936 6 Median 0.99639 0.93829 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.91315 0.87911 18.207 3 0 Median 0.98591 0.83984 0.38718 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108020000 53885000 54137000 10393000 5737700 4655400 0 0 0 69394000 34180000 35213000 28235000 13967000 14268000 0 0 0 0 0 0 33570 1103 35292 176148;176149;176150;176151;176152;176153 178034;178035;178036;178037;178038;178039;178040;178041;178042;178043;178044 178037 11 TLPETLDPAEYNISPETR ______________________________ ETLDPAEYNISPETRRAQAERLAIRAQLKR R T L T R R 1 1 1 1 0 0 3 0 0 1 2 0 0 0 3 1 3 0 1 0 0 0 18 0 2044.9953 O95168;F2Z3P9;C9JXQ9 O95168 13 30 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes no 2 0.0020625 34.179 By MS/MS 1 0.49361 0.50052 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49361 0.50052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7524200 4684300 2839900 0 0 0 0 0 0 7524200 4684300 2839900 0 0 0 0 0 0 0 0 0 33571 1751 35293 176154 178045 178045 1 TLPFYKDYFNVPYPLPK GKAEQGKFALEVAAKTLPFYKDYFNVPYPL PFYKDYFNVPYPLPKIDLIAIADFAAGAME K T L P K I 0 0 1 1 0 0 0 0 0 0 2 2 0 2 4 0 1 0 3 1 0 0 17 1 2101.0925 E9PLK3;P55786;A6NEC2 E9PLK3 284 300 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 3 0.015177 21.534 By MS/MS 1 0.59795 0.62928 NaN 1 Median 0.59795 0.62928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4957500 3209900 1747600 4957500 3209900 1747600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33572 960 35294 176155 178046;178047 178047 2 TLPGMHHPIQMKPADSEK RKAALEAQNALHNIKTLPGMHHPIQMKPAD GMHHPIQMKPADSEKSNAVEDRKLFIGMVS K T L E K S 1 0 0 1 0 1 1 1 2 1 1 2 2 0 3 1 1 0 0 0 0 0 18 1 2015.9921 E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319;V9GYD9 E9PC62 115 132 CELF2 CUGBP Elav-like family member 2 yes no 4 0.017586 19.036 By MS/MS By MS/MS 1 1 0.44018 0.45029 14.677 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38772 0.4059 NaN 1 0 Median 0.49975 0.49953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6924500 3823400 3101100 0 0 0 0 0 0 5347200 2727100 2620100 1577300 1096300 481030 0 0 0 0 0 0 33573 294 35295 176156;176157 178048;178049 178048 2 TLPGSDWTPNAQFITR DLPKLEKRLEEWLGRTLPGSDWTPNAQFIT LPGSDWTPNAQFITRSWLRDGLKPRCITRD R T L T R S 1 1 1 1 0 1 0 1 0 1 1 0 0 1 2 1 3 1 0 0 0 0 16 0 1802.8951 P56192 P56192 468 483 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 6.9084E-10 104.24 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.86181 0.79562 16.076 4 Median 0.82814 0.79748 NaN 1 0 Median 0.89684 0.79376 NaN 1 0 Median 0.9121 0.97823 NaN 1 1 Median 0.75561 0.66 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19507000 10174000 9332800 14964000 7874800 7088900 652730 378310 274420 3599200 1770700 1828500 290950 149970 140980 0 0 0 0 0 0 33574 2508 35296 176158;176159;176160;176161 178050;178051;178052;178053;178054 178051 5 TLPGWNTDISNAR PANQEVLNKVEVQYKTLPGWNTDISNARAF YKTLPGWNTDISNARAFKELPVNAQNYVRF K T L A R A 1 1 2 1 0 0 0 1 0 1 1 0 0 0 1 1 2 1 0 0 0 0 13 0 1443.7106 P30520 P30520 404 416 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 5.735E-07 119.53 By MS/MS By matching By matching 2 2 1 0.95908 0.83984 28.16 5 Median 0.9331 0.90319 17.088 2 0 Median 0.95647 0.83078 1.535 2 0 Median 1.5488 1.5665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27308000 12599000 14709000 20607000 9401700 11205000 3334800 1698800 1636000 3366000 1498000 1868000 0 0 0 0 0 0 0 0 0 33575 2195 35297 176162;176163;176164;176165;176166 178055;178056 178055 2 TLPHFIKDDYGPESR QNVEGKRIPFGFKHRTLPHFIKDDYGPESR TLPHFIKDDYGPESRGFVENSYLAGLTPTE R T L S R G 0 1 0 2 0 0 1 1 1 1 1 1 0 1 2 1 1 0 1 0 0 0 15 1 1773.8686 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 806 820 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.00013085 59.862 By MS/MS By MS/MS 1 1 1.0131 1.081 2.5309 2 Median NaN NaN NaN 0 0 Median 1.1584 1.1005 NaN 1 1 Median 0.88598 1.0618 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18604000 8377700 10226000 0 0 0 2953400 1067500 1885900 15651000 7310200 8340400 0 0 0 0 0 0 0 0 0 33576 486 35298 176167;176168 178057;178058 178057 2 TLPHGAGHLAFSQR KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG RTLPHGAGHLAFSQRGLLVAGMGDVVNIWA R T L Q R G 2 1 0 0 0 1 0 2 2 0 2 0 0 1 1 1 1 0 0 0 0 0 14 0 1490.7742 O15213 O15213 399 412 WDR46 WD repeat-containing protein 46 yes yes 2;3 2.3388E-10 99.752 By MS/MS By MS/MS 3 1 1.0037 0.92227 8.5547 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92708 0.93723 12.027 2 0 Median 1.1355 0.92227 NaN 1 0 Median 18901000 8645500 10255000 0 0 0 0 0 0 0 0 0 0 0 0 16177000 7223900 8953100 2723900 1421600 1302300 33577 1531 35299 176169;176170;176171;176172 178059;178060;178061;178062 178060 4 TLPLFYGSIVR DGKIYKAGQLVKTIKTLPLFYGSIVRFFLY KTIKTLPLFYGSIVRFFLYGDHDGEVYATG K T L V R F 0 1 0 0 0 0 0 1 0 1 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1264.718 A6NHR9;J3KTL8 A6NHR9 620 630 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0018837 56.563 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 1 1 0.93029 0.92178 14.829 9 Median 1.1972 1.1969 NaN 1 0 Median 1.0098 0.86027 NaN 1 0 Median 0.85116 0.92775 14.511 3 0 Plateau 1.1091 0.97147 4.0328 2 0 Median 0.84886 0.89149 NaN 1 0 Median 0.93029 0.76194 NaN 1 0 Median 30169000 16297000 13871000 796750 365040 431710 853130 407580 445550 23989000 13281000 10708000 1476300 669130 807140 2696100 1405900 1290300 357140 168210 188920 33578 518 35300 176173;176174;176175;176176;176177;176178;176179;176180;176181 178063;178064;178065;178066;178067;178068;178069;178070 178066 8 TLPLTGSTFHDQIAMLSHR RTMLLLSRSPEAQPKTLPLTGSTFHDQIAM TGSTFHDQIAMLSHRCFNTLTNSFQPSLLG K T L H R C 1 1 0 1 0 1 0 1 2 1 3 0 1 1 1 2 3 0 0 0 0 0 19 0 2124.0786 P55265 P55265 832 850 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 3;4 3.0549E-08 68.82 By MS/MS By matching By MS/MS By matching 1 2 2 1 0.84938 0.85396 14.446 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8392 0.89259 NaN 1 0 Median 0.87654 0.75652 27.941 2 0 Median 0.8188 0.83787 7.2076 2 0 Median 1.0062 0.82711 NaN 1 0 Median 27241000 13118000 14123000 0 0 0 0 0 0 7633300 3752500 3880800 288850 141440 147410 18711000 8940100 9770400 608170 283760 324410 33579 2498 35301 176182;176183;176184;176185;176186;176187 178071;178072;178073;178074;178075 178072 5 TLPNASTVDNIR SFSVKKQGETVADVRTLPNASTVDNIRSIF DVRTLPNASTVDNIRSIFGNAVSRELIEIG R T L I R S 1 1 2 1 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 1 0 0 12 0 1299.6783 H0Y818;P40692 H0Y818 198 209 MLH1 DNA mismatch repair protein Mlh1 yes no 2 0.00029009 83 By MS/MS 1 0.69982 0.7485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69982 0.7485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4331700 2695200 1636500 0 0 0 0 0 0 4331700 2695200 1636500 0 0 0 0 0 0 0 0 0 33580 1158 35302 176188 178076 178076 1 TLPPATSTEPSVILSK SDPAEVLVKNSQPIKTLPPATSTEPSVILS LPPATSTEPSVILSKSDSDKSSSQVPPILQ K T L S K S 1 0 0 0 0 0 1 0 0 1 2 1 0 0 3 3 3 0 0 1 0 0 16 0 1639.9033 Q86UE4;E5RJU9;H0YBJ8 Q86UE4 511 526 MTDH Protein LYRIC yes no 2 0.00013442 55.314 By MS/MS 1 0.58063 0.53037 NaN 1 Median 0.58063 0.53037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8985900 5389700 3596300 8985900 5389700 3596300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33581 3276 35303 176189 178077;178078;178079 178078 3 TLPPSPNWYCAR ______________________________ EPRTLPPSPNWYCARCSDAVPGGLFGFAAR R T L A R C 1 1 1 0 1 0 0 0 0 0 1 0 0 0 3 1 1 1 1 0 0 0 12 0 1460.6871 Q8TEQ6 Q8TEQ6 7 18 GEMIN5 Gem-associated protein 5 yes yes 3 0.045726 16.137 By MS/MS 1 1.8969 1.5549 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8969 1.5549 NaN 1 0 Median 753620 265620 488010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 753620 265620 488010 33582 3478 35304 176190 178080 178080 1 TLPQAEALDR KNLTQYSWLLDGFPRTLPQAEALDRAYQID DGFPRTLPQAEALDRAYQIDTVINLNVPFE R T L D R A 2 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1112.5826 Q9UIJ7 Q9UIJ7 95 104 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.00068446 110.87 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.99383 0.88282 11.26 5 Median 0.82333 0.78234 NaN 1 0 Median 1.1599 0.98078 NaN 1 1 Median 0.80347 0.77067 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0863 0.92171 6.097 2 0 Median 41800000 22182000 19618000 26823000 14667000 12156000 6005700 2763500 3242200 5826000 3259100 2566900 0 0 0 0 0 0 3145400 1492500 1652900 33583 4291 35305 176191;176192;176193;176194;176195 178081;178082;178083;178084 178082 4 TLPSGLDDYPR WRGRDPALPTLLNPKTLPSGLDDYPRASHP LNPKTLPSGLDDYPRASHPSVTERHLDLRC K T L P R A 0 1 0 2 0 0 0 1 0 0 2 0 0 0 2 1 1 0 1 0 0 0 11 0 1232.6037 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 577 587 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.00022785 73.985 By matching By MS/MS 1 1 1.4516 1.408 60.23 2 Median NaN NaN NaN 0 0 Median 2.4603 2.1556 NaN 1 0 Median 0.85647 0.91968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5165500 2181100 2984400 0 0 0 1846800 604760 1242100 3318700 1576300 1742400 0 0 0 0 0 0 0 0 0 33584 2835 35306 176196;176197 178085 178085 1 TLQAGLSSNHVSHGEVLR SHTCQCFCLRDASFKTLQAGLSSNHVSHGE AGLSSNHVSHGEVLRKVERGSRIVTVVPQD K T L L R K 1 1 1 0 0 1 1 2 2 0 3 0 0 0 0 3 1 0 0 2 0 0 18 0 1903.9864 O95163;F5H2T0 O95163 672 689 IKBKAP Elongator complex protein 1 yes no 3;4 2.5755E-08 90.714 By MS/MS By MS/MS By matching By matching 5 2 2 1 1.3667 1.2141 24.96 10 Median 1.1254 1.088 25.301 5 1 Median 1.5648 1.3079 28.128 2 0 Median 1.4436 1.5692 38.95 2 0 Median 1.4509 1.2372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51471000 21629000 29842000 23173000 10618000 12555000 24036000 9211800 14824000 3126400 1313100 1813300 1135500 485910 649630 0 0 0 0 0 0 33585 1749 35307 176198;176199;176200;176201;176202;176203;176204;176205;176206;176207 178086;178087;178088;178089;178090;178091;178092 178092 7 TLQALEFHTVPFQLLAR NLSLYWSHEALFQKKTLQALEFHTVPFQLL QALEFHTVPFQLLARYKGLNLTEDTYKPRI K T L A R Y 2 1 0 0 0 2 1 0 1 0 4 0 0 2 1 0 2 0 0 1 0 0 17 0 1983.0942 Q08380 Q08380 377 393 LGALS3BP Galectin-3-binding protein yes yes 2;3 0.001731 36.847 By MS/MS By MS/MS By matching By matching 6 3 1 1 1.4228 1.3874 39.957 11 Median 1.045 1.0105 31.594 6 0 Median 2.1875 1.8978 13.014 3 0 Median 1.1866 1.2243 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1471 2.1582 NaN 1 0 Median NaN NaN NaN 0 0 Median 12039000 4977400 7061400 6320900 3192100 3128900 5146600 1572700 3574000 391650 142650 249000 0 0 0 179650 70031 109620 0 0 0 33586 2739 35308 176208;176209;176210;176211;176212;176213;176214;176215;176216;176217;176218 178093;178094;178095;178096;178097;178098 178097 6 TLQALQIPAAK IGLINEALDEGDAQKTLQALQIPAAKLEGV DAQKTLQALQIPAAKLEGVLAEVAQHYQDT K T L A K L 3 0 0 0 0 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1152.6867 P46940;A0A0J9YXZ5 P46940 557 567 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00013385 118.5 By MS/MS By MS/MS By matching By matching 3 1 1 2 0.92876 0.7761 15.07 7 Median 0.74632 0.91004 13.613 3 0 Plateau 0.95879 0.84924 NaN 1 0 Median 0.92981 1.036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85833 0.72707 9.2307 2 0 Median 71892000 35866000 36026000 50973000 25483000 25490000 15341000 7530100 7810400 4281500 2151400 2130100 0 0 0 0 0 0 1296800 701470 595310 33587 2350 35309 176219;176220;176221;176222;176223;176224;176225 178099;178100;178101;178102;178103;178104 178103 6 TLQDIVYK QVHKTRPLLNIRSDKTLQDIVYKLVPGLFK LNIRSDKTLQDIVYKLVPGLFKNEMKRRRD K T L Y K L 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 8 0 978.5386 R4GMX3;Q5T8Z4;P35226;Q5T8Z6;A0A087X259;J3KT13;P35227 R4GMX3 217 224 COMMD3-BMI1;BMI1;PCGF2 Polycomb complex protein BMI-1;Polycomb group RING finger protein 2 no no 2 0.0069954 68.915 By MS/MS 3 1.0797 1.0514 1.5489 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0797 1.0514 1.5489 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30532000 17016000 13516000 0 0 0 0 0 0 30532000 17016000 13516000 0 0 0 0 0 0 0 0 0 33588 4503;130 35310 176226;176227;176228 178105;178106;178107 178107 3 TLQDQTLVQIFKPLTHSLSDK GVKSVKNQAHSVLKKTLQDQTLVQIFKPLT LVQIFKPLTHSLSDKSHAHPGCLKEPHHPA K T L D K S 0 0 0 2 0 3 0 0 1 1 4 2 0 1 1 2 3 0 0 1 0 0 21 1 2411.306 Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576 579 599 PHF3 PHD finger protein 3 yes no 3 0.028247 14.015 By MS/MS 1 0.73113 0.84003 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73113 0.84003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2593700 1446100 1147500 0 0 0 0 0 0 2593700 1446100 1147500 0 0 0 0 0 0 0 0 0 33589 3539 35311 176229 178108;178109 178108 2 TLQEDLVKDVLSNAHIQNELER KKFRFDYTNERALRRTLQEDLVKDVLSNAH KDVLSNAHIQNELEREFERMREDREVLRVI R T L E R E 1 1 2 2 0 2 3 0 1 1 4 1 0 0 0 1 1 0 0 2 0 0 22 1 2563.3242 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 933 954 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.018048 15.896 By MS/MS 1 1.5698 1.4845 NaN 1 Median NaN NaN NaN 0 0 Median 1.5698 1.4845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4879600 2046500 2833200 0 0 0 4879600 2046500 2833200 0 0 0 0 0 0 0 0 0 0 0 0 33590 486 35312 176230 178110 178110 1 TLQEEVMEAMGIK SVEDALERTYVPCLKTLQEEVMEAMGIKET LKTLQEEVMEAMGIKETRKYKKVYWY____ K T L I K E 1 0 0 0 0 1 3 1 0 1 1 1 2 0 0 0 1 0 0 1 0 0 13 0 1477.7157 Q96A35 Q96A35 193 205 MRPL24 39S ribosomal protein L24, mitochondrial yes yes 2 0.033637 26.514 By MS/MS By matching 1 1 1.3078 1.1964 24.932 2 Median 1.0352 1.003 NaN 1 0 Median 1.6522 1.427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1467200 689960 777220 1245900 604360 641510 221310 85597 135710 0 0 0 0 0 0 0 0 0 0 0 0 33591 3593 35313 176231;176232 178111 178111 1 TLQELSIDGLLNR LLGNFLQWYGIFSNKTLQELSIDGLLNRYI NKTLQELSIDGLLNRYILMAFQNSEYGDDS K T L N R Y 0 1 1 1 0 1 1 1 0 1 4 0 0 0 0 1 1 0 0 0 0 0 13 0 1470.8042 Q9Y5B6 Q9Y5B6 794 806 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 0.00021827 80.763 By MS/MS By MS/MS By MS/MS 2 1 1 1.1147 1.0533 16.6 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90463 0.97003 15.37 2 0 Median NaN NaN NaN 0 0 Median 1.2205 1.3019 NaN 1 0 Median 1.2731 1.026 NaN 1 0 Median 7446100 3578200 3867900 0 0 0 0 0 0 2067600 1040200 1027400 0 0 0 1511800 827060 684770 3866700 1710900 2155800 33592 4455 35314 176233;176234;176235;176236 178112;178113;178114;178115 178115 4 TLQEMEMSLPEDEGHTR ADSLLDVLTKGGHSRTLQEMEMSLPEDEGH QEMEMSLPEDEGHTRTLDTAKEMEITEVEP R T L T R T 0 1 0 1 0 1 4 1 1 0 2 0 2 0 1 1 2 0 0 0 0 0 17 0 2001.8772 Q9NPI1 Q9NPI1 475 491 BRD7 Bromodomain-containing protein 7 yes yes 3 5.5677E-05 47.568 By MS/MS By matching 2 1 0.66856 0.69715 21.181 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61474 0.65043 9.8097 2 1 Median 1.0775 0.91991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9041100 5661100 3380000 0 0 0 0 0 0 8441500 5392700 3048800 599640 268400 331240 0 0 0 0 0 0 33593 4053 35315 176237;176238;176239 178116;178117 178117 2 TLQEQLEK ______________________________ ______________________________ R T L E K A 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 Q9H307;G3V5F0;G3V579 Q9H307 7 14 PNN Pinin yes no 2 0.0023555 114.78 By matching By MS/MS By MS/MS 1 5 3 1.3161 1.1704 8.0077 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4174 1.0583 NaN 1 0 Median 1.1482 1.2015 4.6426 5 0 Median 1.397 1.1369 11.761 3 2 Median 42519000 19278000 23240000 0 0 0 0 0 0 0 0 0 1364000 631450 732580 34192000 15671000 18521000 6962800 2976100 3986700 33594 3950 35316 176240;176241;176242;176243;176244;176245;176246;176247;176248 178118;178119;178120;178121;178122;178123 178121 6 TLQEQLENGPNTQLAR REHVKEVQQLQGKIRTLQEQLENGPNTQLA LQEQLENGPNTQLARLQQENSILRDALNQA R T L A R L 1 1 2 0 0 3 2 1 0 0 3 0 0 0 1 0 2 0 0 0 0 0 16 0 1810.9173 Q9P2E9;A0A087WVV2;F8W7S5 Q9P2E9 782 797 RRBP1 Ribosome-binding protein 1 yes no 2 1.1192E-09 100.56 By MS/MS By matching By MS/MS 2 1 3 0.83094 0.77708 31.65 6 Median 0.82998 0.80711 36.299 2 0 Median 0.64951 0.56363 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2143 1.0331 35.995 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47742000 23982000 23760000 40694000 20615000 20079000 1295300 850120 445180 0 0 0 5752800 2516300 3236400 0 0 0 0 0 0 33595 4222 35317 176249;176250;176251;176252;176253;176254 178124;178125;178126;178127 178124 4 TLQEVLTMEYR SLKITLRQLMEGSSKTLQEVLTMEYRLSQA GSSKTLQEVLTMEYRLSQACMRGHDFHEGV K T L Y R L 0 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 2 0 1 1 0 0 11 0 1381.6912 Q6NVY1;F8W8A6;H7C1A5;B9A058 Q6NVY1 321 331 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial yes no 2 4.8195E-09 123.88 By MS/MS By MS/MS 1 1 1.0293 0.88653 NaN 1 Median NaN NaN NaN 0 0 Median 1.0293 0.88653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2561800 1251100 1310700 0 0 0 2561800 1251100 1310700 0 0 0 0 0 0 0 0 0 0 0 0 33596 3146 35318 176255;176256 178128;178129 178128 2 TLQEVTEMDSVK ILGPETLRDLAQGTKTLQEVTEMDSVKRYL GTKTLQEVTEMDSVKRYLEGTSCIAGVLVP K T L V K R 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 1 2 0 0 2 0 0 12 0 1378.665 P58107;A0A075B730 P58107 2742 2753 EPPK1 Epiplakin yes no 2 3.0081E-09 141.95 By MS/MS By MS/MS By matching 2 5 1 1.2223 1.086 15.715 7 Median 1.0818 1.086 NaN 1 1 Median 1.2288 1.0892 18.293 5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0983 0.91907 NaN 1 0 Median 82715000 36585000 46130000 34331000 15743000 18588000 48049000 20696000 27353000 0 0 0 0 0 0 0 0 0 334520 145440 189080 33597 2520 35319 176257;176258;176259;176260;176261;176262;176263;176264 178130;178131;178132;178133;178134;178135 178131 6 TLQEVTEMDSVKR ILGPETLRDLAQGTKTLQEVTEMDSVKRYL TKTLQEVTEMDSVKRYLEGTSCIAGVLVPA K T L K R Y 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 1 2 0 0 2 0 0 13 1 1534.7661 P58107;A0A075B730 P58107 2742 2754 EPPK1 Epiplakin yes no 2;3 6.6096E-22 194.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 9 1 4 6 1.3469 1.2971 16.946 28 Median 1.2704 1.3167 15.502 8 0 Median 1.412 1.3199 13.02 9 1 Median 1.4875 1.7241 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4531 1.6262 21.239 4 0 Median 1.3469 1.1801 16.267 6 0 Median 1311900000 557870000 754050000 708670000 304550000 404120000 534290000 224070000 310210000 9434900 4037100 5397800 0 0 0 41680000 17914000 23766000 17845000 7296200 10549000 33598 2520 35320;35321 176265;176266;176267;176268;176269;176270;176271;176272;176273;176274;176275;176276;176277;176278;176279;176280;176281;176282;176283;176284;176285;176286;176287;176288;176289;176290;176291;176292 178136;178137;178138;178139;178140;178141;178142;178143;178144;178145;178146;178147;178148;178149;178150;178151;178152;178153;178154;178155;178156;178157;178158;178159;178160;178161;178162;178163;178164;178165;178166;178167;178168;178169;178170;178171;178172;178173;178174;178175;178176 178163 1201 41 TLQEVTQLSQEAQR CFIAGADINMLAACKTLQEVTQLSQEAQRI KTLQEVTQLSQEAQRIVEKLEKSTKPIVAA K T L Q R I 1 1 0 0 0 4 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1629.8322 H0YFD6;P40939;A0A2R8Y4F5;A0A2R8YG21;A0A2R8Y688 H0YFD6 112 125 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2;3 1.9804E-68 246.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.2596 1.1747 21.179 8 Median 1.0243 0.96854 0.29926 2 0 Median 1.424 1.2321 1.3064 2 0 Median 1.1114 1.1186 3.9587 2 0 Median 1.3918 1.1995 NaN 1 0 Median 1.8428 1.8967 NaN 1 1 Median NaN NaN NaN 0 0 Median 176910000 83174000 93736000 72400000 35884000 36516000 11367000 4816400 6551000 78976000 37394000 41582000 6382200 2606800 3775400 7784600 2471900 5312700 0 0 0 33599 1180 35322 176293;176294;176295;176296;176297;176298;176299;176300 178177;178178;178179;178180;178181;178182;178183;178184;178185;178186 178178 10 TLQGHSVIR PSRPGAQGVEPQNLRTLQGHSVIRSATNTT EPQNLRTLQGHSVIRSATNTTLPHMLMSQR R T L I R S 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1009.5669 A0A0U1RRM1;Q8WXI9 A0A0U1RRM1 241 249 GATAD2B Transcriptional repressor p66-beta yes no 2 0.020257 63.565 By MS/MS By MS/MS 1 1 0.97025 1.0302 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97025 1.0302 NaN 1 1 Median NaN NaN NaN 0 0 Median 758510 382750 375770 0 0 0 0 0 0 0 0 0 0 0 0 758510 382750 375770 0 0 0 33600 311 35323 176301;176302 178187;178188 178187 2 TLQGLEIELQSQLSMK EQLQMSRSEVTDLRRTLQGLEIELQSQLSM LQGLEIELQSQLSMKAALEDTLAETEARFG R T L M K A 0 0 0 0 0 3 2 1 0 1 4 1 1 0 0 2 1 0 0 0 0 0 16 0 1816.9604 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;CON__P08730-1;CON__P08727;P08727;K7EMS3;CON__P19001 CON__P08727 302 317 KRT13;KRT19 Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 19 no no 2 3.9666E-27 199.4 By MS/MS By matching 2 2 1.5483 1.3315 42.638 4 Linear NaN NaN NaN 0 0 Median 1.4624 1.2545 18.08 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84819 0.69504 40.495 2 0 Median 9031000 3551300 5479700 0 0 0 8115200 3134400 4980800 0 0 0 0 0 0 0 0 0 915800 416890 498900 + 33601 752;760;736;753 35324;35325 176303;176304;176305;176306 178189;178190;178191;178192;178193 178191 258 5 TLQHGLYYASR TRHYDQDYYRDPRERTLQHGLYYASRSRSP PRERTLQHGLYYASRSRSPNRFDAHDPRYE R T L S R S 1 1 0 0 0 1 0 1 1 0 2 0 0 0 0 1 1 0 2 0 0 0 11 0 1307.6622 Q96T58;F6WRY4 Q96T58 177 187 SPEN Msx2-interacting protein yes no 3 0.017692 43.382 By MS/MS 2 0.81608 0.9088 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81608 0.9088 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2080100 1116700 963380 0 0 0 0 0 0 2080100 1116700 963380 0 0 0 0 0 0 0 0 0 33602 3741 35326 176307;176308 178194;178195 178195 2 TLQIFNIEMK ASKVIALKGIKESGKTLQIFNIEMKSKMKA KESGKTLQIFNIEMKSKMKAHTMTDDVTFW K T L M K S 0 0 1 0 0 1 1 0 0 2 1 1 1 1 0 0 1 0 0 0 0 0 10 0 1235.6584 A0A087WVQ6;Q00610;J3KS13;P53675;A0A087WX41;J3KSQ2;F5H5N6 A0A087WVQ6 91 100 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.00041199 78.516 By MS/MS By matching By matching 4 4 2 1.3772 1.3251 48.374 10 Median 1.4504 1.457 5.3088 4 1 Median 1.2303 1.177 72.339 4 0 Median NaN NaN NaN 0 0 Median 1.3766 1.2372 10.35 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82079000 35526000 46553000 44835000 18812000 26023000 35160000 15863000 19297000 0 0 0 2083700 850570 1233100 0 0 0 0 0 0 33603 44 35327 176309;176310;176311;176312;176313;176314;176315;176316;176317;176318 178196;178197;178198 178198 3 TLQKPESVISVQK QILNNWLEAQEERLKTLQKPESVISVQKLL LKTLQKPESVISVQKLLLDCQDIENQLAIK K T L Q K L 0 0 0 0 0 2 1 0 0 1 1 2 0 0 1 2 1 0 0 2 0 0 13 1 1455.8297 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3 Q8WXH0 5195 5207 SYNE2 Nesprin-2 yes no 2;3 1.6297E-05 88.282 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 0.89831 0.97219 34.121 9 Median 0.89831 0.97219 NaN 1 0 Median 1.1384 1.0848 NaN 1 0 Median 0.69784 0.79103 6.9393 2 0 Median 1.4845 1.4435 19.339 2 0 Median 0.56311 0.60003 16.133 2 0 Median 1.1756 1.0491 NaN 1 0 Median 45507000 24856000 20651000 2685300 1363000 1322200 5490600 2424500 3066100 23560000 14282000 9278400 3804800 1258600 2546200 6416100 3927600 2488400 3550000 1600600 1949500 33604 3521 35328 176319;176320;176321;176322;176323;176324;176325;176326;176327 178199;178200;178201;178202;178203;178204;178205;178206 178200 8 TLQLALDLVSSR ILRVLSTPDLEVRKKTLQLALDLVSSRNVE RKKTLQLALDLVSSRNVEELVIVLKKEVIK K T L S R N 1 1 0 1 0 1 0 0 0 0 4 0 0 0 0 2 1 0 0 1 0 0 12 0 1314.7507 P53618;E9PP73 P53618 340 351 COPB1 Coatomer subunit beta yes no 2 3.9932E-06 105.86 By MS/MS By MS/MS 1 2 1.0287 0.90467 9.2044 3 Median 1.0287 1.025 NaN 1 1 Median 1.0106 0.88025 3.8697 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13284000 6611400 6672600 1610200 840010 770150 11674000 5771400 5902500 0 0 0 0 0 0 0 0 0 0 0 0 33605 2472 35329 176328;176329;176330 178207;178208;178209 178208 3 TLQLDNNFEVK SSVKLWDLRKLKNFKTLQLDNNFEVKSLIF KNFKTLQLDNNFEVKSLIFDQSGTYLALGG K T L V K S 0 0 2 1 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 11 0 1319.6721 Q9UMS4 Q9UMS4 429 439 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 2.4863E-06 160.59 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 2 1 1 1.1846 1.0645 13.313 10 Median 1.2459 1.1703 4.8844 2 0 Median 1.1524 0.97676 NaN 1 0 Median 1.0058 0.96189 16.008 3 1 Median 1.2689 1.0662 3.1545 2 0 Median 1.1371 1.0867 NaN 1 1 Median 0.9562 0.79838 NaN 1 0 Median 349630000 159630000 190000000 39736000 15833000 23903000 11250000 4922700 6327200 224580000 107310000 117270000 49386000 21492000 27895000 24086000 9771900 14314000 591200 299630 291570 33606 4334 35330 176331;176332;176333;176334;176335;176336;176337;176338;176339;176340 178210;178211;178212;178213;178214;178215;178216;178217;178218;178219;178220;178221 178214 12 TLQLEYR RTERVRNCSSPEFSKTLQLEYRFETVQKLR CSSPEFSKTLQLEYRFETVQKLRFGIYDID K T L Y R F 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 7 0 921.49198 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX45;Q5JX56;Q5JX55;Q5JX61;Q5JX52;Q5JX54;Q5JX57;E7EV27 Q99829 61 67 CPNE1 Copine-1 yes no 2 0.0022148 108.24 By MS/MS By MS/MS 1 1 1.0495 0.94949 10.572 2 Median 0.9316 0.8811 NaN 1 0 Median 1.1824 1.0232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27224000 12441000 14782000 18827000 8732000 10095000 8397100 3709300 4687800 0 0 0 0 0 0 0 0 0 0 0 0 33607 559 35331 176341;176342 178222;178223;178224;178225 178222 4 TLQLWLDNPK GPQQTQKVFLFIRNRTLQLWLDNPKIQLTF FIRNRTLQLWLDNPKIQLTFEATLQQLEAP R T L P K I 0 0 1 1 0 1 0 0 0 0 3 1 0 0 1 0 1 1 0 0 0 0 10 0 1226.6659 O60341;R4GMQ1 O60341 217 226 KDM1A Lysine-specific histone demethylase 1A yes no 2 0.0049654 51.346 By MS/MS 1 0.77699 0.84678 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77699 0.84678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12320000 6756700 5563100 0 0 0 0 0 0 12320000 6756700 5563100 0 0 0 0 0 0 0 0 0 33608 1613 35332 176343 178226;178227 178226 2 TLQNQLVELK GESLLLSVPPGEEKRTLQNQLVELKNHWEE GEEKRTLQNQLVELKNHWEELSKKTADRQS R T L L K N 0 0 1 0 0 2 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 10 0 1184.6765 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4872 4881 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00039551 109.71 By MS/MS By MS/MS 1 1 0.96937 0.9164 23.624 2 Median 0.77296 0.77543 NaN 1 0 Median 1.2157 1.083 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41002000 19642000 21360000 20073000 10663000 9410200 20929000 8979100 11950000 0 0 0 0 0 0 0 0 0 0 0 0 33609 1220 35333 176344;176345 178228;178229;178230;178231 178230 4 TLQQQTFK ______________________________ ______________________________ K T L F K I 0 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 8 0 992.5291 P54727;Q5W0S5;K7ENJ0;K7ELW1 P54727 7 14 RAD23B;RAD23A UV excision repair protein RAD23 homolog B no no 2 0.0094683 60.76 By MS/MS By matching By matching By matching 2 3 2 1 0.94762 0.9878 21.838 8 Median 0.99779 0.91738 18.529 2 0 Median 1.1895 0.95639 15.701 3 0 Plateau 0.76212 0.77861 38.224 2 0 Median 1.3129 1.1507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20286000 9480400 10806000 4059600 1939400 2120200 13463000 6244200 7218600 2369400 1140100 1229300 394100 156660 237440 0 0 0 0 0 0 33610 2486 35334 176346;176347;176348;176349;176350;176351;176352;176353 178232 178232 1 TLQSLLTPQPPLLK GYLKVLVDSLVEDDRTLQSLLTPQPPLLKA RTLQSLLTPQPPLLKALYTYESKMAFLTRV R T L L K A 0 0 0 0 0 2 0 0 0 0 5 1 0 0 3 1 2 0 0 0 0 0 14 0 1547.9287 Q92621;U3KPX2 Q92621 1535 1548 NUP205 Nuclear pore complex protein Nup205 yes no 2 9.7392E-06 90.685 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.74929 0.77047 19.623 5 Median NaN NaN NaN 0 0 Median 0.88554 0.77047 NaN 1 0 Median 0.70247 0.77395 8.3557 2 0 Median 0.89177 0.81164 NaN 1 0 Median 0.49796 0.51091 NaN 1 0 Median NaN NaN NaN 0 0 Median 11615000 6779900 4835300 0 0 0 951720 481420 470300 8923600 5307100 3616500 1240300 675730 564550 499530 315670 183870 0 0 0 33611 3547 35335 176354;176355;176356;176357;176358 178233;178234;178235;178236 178234 4 TLQTDSIDSFETQR KNKDLDARLFLDHDKTLQTDSIDSFETQRT KTLQTDSIDSFETQRTPRKSNLDEEVNVIP K T L Q R T 0 1 0 2 0 2 1 0 0 1 1 0 0 1 0 2 3 0 0 0 0 0 14 0 1639.7689 A0A3B3IS71;P06400 A0A3B3IS71 342 355 RB1 Retinoblastoma-associated protein yes no 2 6.2255E-07 119.76 By MS/MS By matching 2 1 0.88099 0.93543 63.841 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8156 0.87669 9.1716 2 0 Median NaN NaN NaN 0 0 Median 2.25 2.6338 NaN 1 0 Median NaN NaN NaN 0 0 Median 16609000 8016200 8592500 0 0 0 0 0 0 14323000 7379600 6943000 0 0 0 2286100 636600 1649500 0 0 0 33612 421 35336 176359;176360;176361 178237;178238;178239 178239 3 TLQTIALLGYLK NGVNGILADEMGLGKTLQTIALLGYLKHYR LGKTLQTIALLGYLKHYRNIPGPHMVLVPK K T L L K H 1 0 0 0 0 1 0 1 0 1 4 1 0 0 0 0 2 0 1 0 0 0 12 0 1332.8017 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 215 226 SMARCA1 Probable global transcription activator SNF2L1 no no 2 0.0011423 56.563 By MS/MS 1 0.94449 1.0218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94449 1.0218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2849400 1280100 1569300 0 0 0 0 0 0 2849400 1280100 1569300 0 0 0 0 0 0 0 0 0 33613 167;643 35337 176362 178240 178240 1 TLQTISLLGYMK NGINGILADEMGLGKTLQTISLLGYMKHYR LGKTLQTISLLGYMKHYRNIPGPHMVLVPK K T L M K H 0 0 0 0 0 1 0 1 0 1 3 1 1 0 0 1 2 0 1 0 0 0 12 0 1366.753 O60264 O60264 212 223 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 7.8145E-05 130.96 By matching By MS/MS By matching By MS/MS By matching 1 3 2 6 3 1.1275 1.1346 18.942 15 Median NaN NaN NaN 0 0 Median 1.2705 1.0936 NaN 1 0 Median 1.0644 1.1474 9.2722 3 0 Plateau 1.4772 1.247 2.5186 2 0 Median 1.1176 1.1334 4.0874 6 0 Median 1.3976 1.2139 43.281 3 0 Median 43363000 20663000 22700000 0 0 0 745280 308690 436590 12851000 6264700 6586500 1211400 503190 708220 27461000 12989000 14472000 1094300 597190 497100 33614 1608 35338;35339 176363;176364;176365;176366;176367;176368;176369;176370;176371;176372;176373;176374;176375;176376;176377 178241;178242;178243;178244;178245;178246;178247;178248;178249;178250;178251 178249 520 11 TLQTMQNFQK AKTMQAVNKKMDPQKTLQTMQNFQKENMKM MDPQKTLQTMQNFQKENMKMEMTEEMINDT K T L Q K E 0 0 1 0 0 3 0 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 10 0 1237.6125 Q9UQN3;C9J0A7;A0A087WW88 Q9UQN3 121 130 CHMP2B Charged multivesicular body protein 2b yes no 2 5.5273E-05 131.06 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 1.1394 1.1198 17.334 6 Linear NaN NaN NaN 0 0 Median 0.91132 0.83623 NaN 1 0 Median 1.2051 1.1294 NaN 1 1 Median 1.3021 1.0911 20.62 3 1 Plateau 1.0773 1.0981 NaN 1 1 Median NaN NaN NaN 0 0 Median 34981000 17594000 17387000 0 0 0 776470 443120 333350 11347000 5282000 6065200 10070000 4831200 5238700 12787000 7037300 5750100 0 0 0 33615 667 35340;35341 176378;176379;176380;176381;176382;176383 178252;178253;178254;178255;178256;178257 178252 243 6 TLQVFGIVPDGTLQLLK IPETLLELGEIPTLKTLQVFGIVPDGTLQL QVFGIVPDGTLQLLKEALPHLQINCSHFTT K T L L K E 0 0 0 1 0 2 0 2 0 1 4 1 0 1 1 0 2 0 0 2 0 0 17 0 1841.0662 A0A0A0MTL5;Q13309;D6RAG5 A0A0A0MTL5 375 391 SKP2 S-phase kinase-associated protein 2 yes no 2 0.00032838 45.257 By MS/MS 2 1.0333 1.0884 22.51 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0333 1.0884 22.51 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3369700 1650400 1719300 0 0 0 0 0 0 3369700 1650400 1719300 0 0 0 0 0 0 0 0 0 33616 195 35342 176384;176385 178258 178258 1 TLQVLIK KIAQYKRKLMDLSHRTLQVLIKQEIQRKSG KLMDLSHRTLQVLIKQEIQRKSGYAIQADE R T L I K Q 0 0 0 0 0 1 0 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 7 0 813.53239 Q7Z3B4 Q7Z3B4 386 392 NUP54 Nucleoporin p54 yes yes 2 0.013187 76.847 By MS/MS By MS/MS 1 1 1.3608 1.2426 23.608 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0827 1.0516 NaN 1 0 Median 1.7104 1.4684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15080000 7152800 7927100 0 0 0 0 0 0 12531000 6293900 6237000 2549000 858910 1690100 0 0 0 0 0 0 33617 3239 35343 176386;176387 178259;178260;178261;178262 178260 4 TLQVQAAQFAK ______________________________ HEVKTLQVQAAQFAKQTGQWIGMVENFNQA K T L A K Q 3 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 11 0 1203.6612 G8JLQ3;P78537;F8W099;F8W606;A0A087WSV2;F8W036;F8VP73 G8JLQ3 12 22 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 yes no 2 0.00015996 107.47 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2556 1.1234 16.469 4 Median 0.93355 0.84538 NaN 1 0 Median 1.373 1.1282 NaN 1 0 Median 1.1483 1.1186 NaN 1 0 Median 1.5221 1.2372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56267000 25697000 30571000 24486000 12409000 12077000 26289000 10973000 15316000 3842500 1680000 2162500 1649700 634550 1015200 0 0 0 0 0 0 33618 1137 35344 176388;176389;176390;176391 178263;178264;178265;178266;178267;178268;178269 178265 7 TLQYLSQGNVVFKDSVK ______________________________ QYLSQGNVVFKDSVKVMTVNYNTHGELGEG R T L V K V 0 0 1 1 0 2 0 1 0 0 2 2 0 1 0 2 1 0 1 3 0 0 17 1 1925.0258 P82663;E7EPW2 P82663 12 28 MRPS25 28S ribosomal protein S25, mitochondrial yes no 3 0.0011969 32.926 By MS/MS By matching 2 2 1.048 1.0137 9.5468 4 Median 0.94907 0.95817 8.6015 2 0 Median 1.1888 1.0721 8.5541 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14363000 7033000 7329500 13434000 6647900 6785900 928750 385110 543640 0 0 0 0 0 0 0 0 0 0 0 0 33619 2651 35345 176392;176393;176394;176395 178270;178271 178271 2 TLRDEINAILQK SPALQDLSQPEGLKKTLRDEINAILQKRIM LKKTLRDEINAILQKRIMVLDGGMGTMIQR K T L Q K R 1 1 1 1 0 1 1 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 1 1412.7987 Q99707;A0A494C064;A0A494C1A2 Q99707 17 28 MTR Methionine synthase yes no 2 0.0068722 52.79 By matching By MS/MS By matching By matching By matching 2 1 1 1 1 1.6397 1.6587 72.656 6 Median 1.6397 1.6587 9.6675 2 0 Median 1.3193 1.2439 NaN 1 0 Median 2.5448 2.5538 NaN 1 0 Median 0.36488 0.34657 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.6705 2.3059 NaN 1 0 Median 10594000 4115300 6479100 1696400 592320 1104100 3187600 1454300 1733300 4705900 1479100 3226800 409090 303240 105850 0 0 0 595370 286400 308970 33620 3763 35346 176396;176397;176398;176399;176400;176401 178272;178273 178273 2 TLRDLIHGAPVGKPAANR ISFVLGEKTSNLRVKTLRDLIHGAPVGKPA DLIHGAPVGKPAANRAFVSMVYSEEGAEDR K T L N R A 3 2 1 1 0 0 0 2 1 1 2 1 0 0 2 0 1 0 0 1 0 0 18 2 1885.0646 Q14683;G8JLG1;H0Y7K8 Q14683 60 77 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 4 9.6784E-05 40.349 By MS/MS 1 0.4746 0.53503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4746 0.53503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4372300 2746700 1625600 0 0 0 0 0 0 4372300 2746700 1625600 0 0 0 0 0 0 0 0 0 33621 2889 35347 176402 178274 178274 1 TLREQGVEEHETLLLR KLHTDDELNWLDHGRTLREQGVEEHETLLL LREQGVEEHETLLLRRKFFYSDQNVDSRDP R T L L R R 0 2 0 0 0 1 4 1 1 0 4 0 0 0 0 0 2 0 0 1 0 0 16 1 1922.0221 Q9Y490 Q9Y490 179 194 TLN1 Talin-1 yes yes 3;4 5.4303E-10 121.32 By MS/MS By matching By matching 2 1 1 1.8172 2.1121 43.661 4 Median 1.9858 2.1236 13.639 2 0 Median NaN NaN NaN 0 0 Median 1.8313 2.3134 NaN 1 0 Median 0.99615 0.92918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47808000 19294000 28515000 35853000 13578000 22275000 0 0 0 4331900 1573800 2758100 7623000 4142100 3481000 0 0 0 0 0 0 33622 4441 35348 176403;176404;176405;176406 178275;178276 178276 2 TLRNPADSISHVAYR HIQPVRAELMQALWRTLRNPADSISHVAYR TLRNPADSISHVAYRVLGKFGGSNRKMLKE R T L Y R V 2 2 1 1 0 0 0 0 1 1 1 0 0 0 1 2 1 0 1 1 0 0 15 1 1698.8802 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 878 892 TRRAP Transformation/transcription domain-associated protein yes no 3;4 7.2188E-09 123.29 By MS/MS 2 0.73488 0.80764 2.2916 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73488 0.80764 2.2916 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33901000 18293000 15608000 0 0 0 0 0 0 33901000 18293000 15608000 0 0 0 0 0 0 0 0 0 33623 991 35349 176407;176408 178277;178278 178277 1 TLRPALVGVVK TVALVSKVGYKLHGRTLRPALVGVVKEA__ LHGRTLRPALVGVVKEA_____________ R T L V K E 1 1 0 0 0 0 0 1 0 0 2 1 0 0 1 0 1 0 0 3 0 0 11 1 1151.739 Q9HAV7 Q9HAV7 205 215 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 2 0.00080507 112.75 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.2331 1.1978 31.776 6 Median 1.0707 1.1091 NaN 1 0 Median 1.1851 1.072 18.788 2 0 Median 1.151 1.2007 NaN 1 0 Median 1.3498 1.1948 NaN 1 0 Median 2.2406 2.3659 NaN 1 0 Median NaN NaN NaN 0 0 Median 161820000 76164000 85657000 137080000 65063000 72019000 8393700 3867500 4526200 9405000 4590800 4814200 4455500 1903900 2551500 2483600 738070 1745500 0 0 0 33624 4013 35350 176409;176410;176411;176412;176413;176414 178279;178280;178281;178282 178279 4 TLSDDLDEAAK QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE PTMKTLSDDLDEAAKEFQEKHKKEVGKLKS K T L A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1176.551 Q9H0A0;A0A087WV29 Q9H0A0 932 942 NAT10 N-acetyltransferase 10 yes no 2 0.00016513 80.688 By matching By MS/MS 2 1 1.1113 1.2208 13.629 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9775 1.0658 19.271 2 0 Median 1.2409 1.0698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13513000 6519200 6994100 0 0 0 0 0 0 9207800 4737000 4470900 4305500 1782300 2523200 0 0 0 0 0 0 33625 3921 35351 176415;176416;176417 178283 178283 1 TLSDVEDQKELASPVSPELR FTAMMKSAKLPQTVKTLSDVEDQKELASPV EDQKELASPVSPELRQKEVQMNFLNQLTSV K T L L R Q 1 1 0 2 0 1 3 0 0 0 3 1 0 0 2 3 1 0 0 2 0 0 20 1 2212.1223 Q5T4S7 Q5T4S7 166 185 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 1.8009E-10 86.727 By MS/MS By matching By matching By matching 1 1 1 1 0.7997 0.82707 32.4 4 Median 0.83285 0.87031 NaN 1 0 Median 0.8464 0.78598 NaN 1 0 Median 0.76786 0.88711 NaN 1 0 Median 0.48725 0.44676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29752000 15875000 13877000 19414000 10578000 8836500 8100200 4211100 3889100 1844300 809220 1035100 393290 276620 116670 0 0 0 0 0 0 33626 3089 35352 176418;176419;176420;176421 178284;178285 178284 2 TLSDYNIQK QQRLIFAGKQLEDGRTLSDYNIQKESTLHL QLEDGRTLSDYNIQKESTLHLVLRLRGGMQ R T L Q K E 0 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1080.5451 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;Q49A90;M0R1V7;M0R2S1;M0R1M6;A0A2R8Y422 P0CG48 55 63 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 2 0.00039714 133.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 12 9 11 9 8 1.2189 1.0977 31.987 60 Median 1.2123 1.1378 8.9618 12 4 Median 1.2501 1.0991 23.89 12 2 Median 1.0164 1.0893 22.993 9 3 Median 0.9823 0.8152 32.47 10 2 Median 0.99775 1.0546 39.689 9 0 Median 1.4877 1.2479 33.227 8 1 Median 10352000000 4572600000 5779800000 2463500000 1109000000 1354500000 2038900000 864940000 1173900000 61791000 30478000 31313000 3367000000 1404000000 1962900000 1977000000 985350000 991610000 444360000 178830000 265530000 33627 606 35353 176422;176423;176424;176425;176426;176427;176428;176429;176430;176431;176432;176433;176434;176435;176436;176437;176438;176439;176440;176441;176442;176443;176444;176445;176446;176447;176448;176449;176450;176451;176452;176453;176454;176455;176456;176457;176458;176459;176460;176461;176462;176463;176464;176465;176466;176467;176468;176469;176470;176471;176472;176473;176474;176475;176476;176477;176478;176479;176480;176481;176482 178286;178287;178288;178289;178290;178291;178292;178293;178294;178295;178296;178297;178298;178299;178300;178301;178302;178303;178304;178305;178306;178307;178308;178309;178310;178311;178312;178313;178314;178315;178316;178317;178318;178319;178320;178321;178322;178323;178324;178325;178326;178327;178328;178329;178330;178331;178332;178333;178334;178335;178336;178337;178338;178339;178340;178341;178342;178343;178344;178345;178346;178347;178348;178349;178350;178351;178352;178353;178354;178355;178356;178357;178358;178359;178360;178361;178362;178363;178364;178365;178366;178367;178368;178369;178370;178371;178372;178373;178374;178375;178376;178377;178378;178379;178380;178381;178382;178383;178384;178385;178386 178369 101 TLSDYNIQKESTLHLVLR QQRLIFAGKQLEDGRTLSDYNIQKESTLHL DYNIQKESTLHLVLRLRGGMQIFVKTLTGK R T L L R L 0 1 1 1 0 1 1 0 1 1 4 1 0 0 0 2 2 0 1 1 0 0 18 1 2129.1481 P0CG48;F5GYU3;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;F5H388;B4DV12;F5H265;F5H2Z3;F5H6Q2;J3QTR3;J3QS39;P62987;P62979;P0CG47;M0R2S1;M0R1M6;A0A2R8Y422 P0CG48 55 72 UBC;UBB;RPS27A;UBA52 Polyubiquitin-C;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin yes no 3;4 9.1198E-07 80.609 By matching By MS/MS By matching 1 2 1 0.94436 0.99141 5.8439 4 Median 0.87901 0.90486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94436 1.0032 4.3233 2 0 Median 1.1129 1.0102 NaN 1 0 Median 78258000 39851000 38408000 4768100 2516000 2252100 0 0 0 0 0 0 0 0 0 73241000 37189000 36052000 249260 145170 104090 33628 606 35354 176483;176484;176485;176486 178387;178388;178389;178390;178391;178392;178393 178387 7 TLSEVDYAPAGPAR ASGDDRSCSVLQMAKTLSEVDYAPAGPARS KTLSEVDYAPAGPARSALLPGPLELQPPRG K T L A R S 3 1 0 1 0 0 1 1 0 0 1 0 0 0 2 1 1 0 1 1 0 0 14 0 1445.7151 O15357;A0A0A0MTP6;H0YFZ4 O15357 1129 1142 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 2.8419E-05 97.456 By MS/MS 1 0.45128 0.42396 NaN 1 Median 0.45128 0.42396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9789700 6449900 3339800 9789700 6449900 3339800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33629 1539 35355 176487 178394 178394 1 TLSFGSDLNYATR ARHCDLQVRIDHTSRTLSFGSDLNYATRED SRTLSFGSDLNYATREDAPIGPHLQSMPSE R T L T R E 1 1 1 1 0 0 0 1 0 0 2 0 0 1 0 2 2 0 1 0 0 0 13 0 1443.6994 Q14152 Q14152 490 502 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 3.9972E-30 166.97 By MS/MS By MS/MS By MS/MS 4 3 1 1.1384 1.0547 4.2027 7 Median 1.112 1.0717 2.9932 4 3 Median 1.2545 1.0547 6.2333 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 190220000 88468000 101750000 162100000 75959000 86136000 28124000 12509000 15615000 0 0 0 0 0 0 0 0 0 0 0 0 33630 2860 35356 176488;176489;176490;176491;176492;176493;176494;176495 178395;178396;178397;178398;178399;178400;178401;178402;178403;178404;178405 178397 11 TLSFSFPPNTVTGSER ILLDLTDNRLQSTLKTLSFSFPPNTVTGSE LSFSFPPNTVTGSERVQITAIGDVLGPSIN K T L E R V 0 1 1 0 0 0 1 1 0 0 1 0 0 2 2 3 3 0 0 1 0 0 16 0 1738.8526 Q6YHK3 Q6YHK3 879 894 CD109 CD109 antigen yes yes 2 0.043603 22.917 By MS/MS 1 0.73586 0.76919 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73586 0.76919 NaN 1 0 Median NaN NaN NaN 0 0 Median 1365800 692130 673710 0 0 0 0 0 0 0 0 0 0 0 0 1365800 692130 673710 0 0 0 33631 3193 35357 176496 178406 178406 1 TLSGAQDSEAAFAK PPTTIGMMTLKAAFKTLSGAQDSEAAFAKL KTLSGAQDSEAAFAKLDQKDLVLPTQALPA K T L A K L 4 0 0 1 0 1 1 1 0 0 1 1 0 1 0 2 1 0 0 0 0 0 14 0 1394.6678 H3BR06;Q15554;H3BTA7;U3KQ35;J3KSZ6 H3BR06 215 228 TERF2 Telomeric repeat-binding factor 2 yes no 2 2.41E-10 103.22 By MS/MS By MS/MS 2 1 0.83817 0.84709 1.3688 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83817 0.84709 1.3688 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14633000 7374100 7259100 0 0 0 0 0 0 14633000 7374100 7259100 0 0 0 0 0 0 0 0 0 33632 1226 35358 176497;176498;176499 178407;178408;178409;178410 178410 4 TLSGMESYCVR APEIELALRLTEYSRTLSGMESYCVRAFAD EYSRTLSGMESYCVRAFADAMEVIPSTLAE R T L V R A 0 1 0 0 1 0 1 1 0 0 1 0 1 0 0 2 1 0 1 1 0 0 11 0 1301.5744 P50991 P50991 442 452 CCT4 T-complex protein 1 subunit delta yes yes 2 0.014119 37.191 By MS/MS 1 1.2334 1.0408 NaN 1 Median NaN NaN NaN 0 0 Median 1.2334 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7049600 3020200 4029400 0 0 0 7049600 3020200 4029400 0 0 0 0 0 0 0 0 0 0 0 0 33633 2424 35359 176500 178411;178412 178412 2 TLSHHASTVQMALEDSEQK TSHLLANPADYDSLRTLSHHASTVQMALED HASTVQMALEDSEQKHNLLHSIFMDLEDLS R T L Q K H 2 0 0 1 0 2 2 0 2 0 2 1 1 0 0 3 2 0 0 1 0 0 19 0 2110.9953 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3819 3837 SYNE2 Nesprin-2 yes no 3 5.7141E-15 88.551 By MS/MS 1 1.0465 1.1238 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0465 1.1238 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6243000 2884800 3358200 0 0 0 0 0 0 6243000 2884800 3358200 0 0 0 0 0 0 0 0 0 33634 3521 35360 176501 178413 178413 1 TLSHNLLVSEVYNQLK YQIDAAIVRIMKMRKTLSHNLLVSEVYNQL LSHNLLVSEVYNQLKFPVKPADLKKRIESL K T L L K F 0 0 2 0 0 1 1 0 1 0 4 1 0 0 0 2 1 0 1 2 0 0 16 0 1856.9996 Q13620;K4DI93 Q13620 863 878 CUL4B Cullin-4B yes no 3 1.006E-05 81.448 By matching By MS/MS By matching By matching 1 1 1 2 0.98325 0.90717 21.709 5 Median 0.98325 0.96886 NaN 1 0 Median 1.311 1.1458 NaN 1 0 Median 0.67105 0.71372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94651 0.78581 20.309 2 0 Median 16434000 7331200 9103300 2021300 1081800 939560 10503000 4208500 6294000 1779100 1141500 637610 0 0 0 0 0 0 2131500 899420 1232100 33635 1358 35361 176502;176503;176504;176505;176506 178414 178414 1 TLSHPQQMALLDQTK YFEPLTLAAVGAASKTLSHPQQMALLDQTK TLSHPQQMALLDQTKTLAESALQLLYTAKE K T L T K T 1 0 0 1 0 3 0 0 1 0 3 1 1 0 1 1 2 0 0 0 0 0 15 0 1709.8771 Q9Y490 Q9Y490 1752 1766 TLN1 Talin-1 yes yes 2;3 1.7077E-26 197.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 7 1 1 1 2 1.1239 1.0054 33.068 14 Median 0.81271 0.77792 7.3453 2 0 Median 1.1337 1.0045 15.565 7 0 Median 1.1123 1.2249 NaN 1 0 Median 1.1165 1.0062 NaN 1 0 Median 2.3092 2.4164 NaN 1 1 Median 0.9492 0.80058 46.74 2 0 Median 196750000 93037000 103710000 83018000 43196000 39822000 76202000 33633000 42569000 21948000 10226000 11722000 5264200 2448800 2815500 8077300 2644900 5432400 2237300 888230 1349100 33636 4441 35362;35363 176507;176508;176509;176510;176511;176512;176513;176514;176515;176516;176517;176518;176519;176520 178415;178416;178417;178418;178419;178420;178421;178422;178423;178424;178425;178426;178427;178428;178429;178430;178431 178417 1987 16 TLSLDEVYLIDSGAQYK NGAIIHYAPVPETNRTLSLDEVYLIDSGAQ SLDEVYLIDSGAQYKDGTTDVTRTMHFGTP R T L Y K D 1 0 0 2 0 1 1 1 0 1 3 1 0 0 0 2 1 0 2 1 0 0 17 0 1913.9622 Q9NQW7;Q5T6H7 Q9NQW7 405 421 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 2.1382E-05 64.878 By MS/MS By MS/MS 1 2 0.9759 0.89568 7.2516 3 Median 0.92002 0.89568 NaN 1 0 Median 1.0256 0.89232 10.251 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8916200 4333500 4582700 2881800 1408400 1473500 6034400 2925200 3109200 0 0 0 0 0 0 0 0 0 0 0 0 33637 4070 35364 176521;176522;176523 178432;178433;178434;178435 178433 4 TLSLHYFEEPELR KLSVVEYDPGTHDLKTLSLHYFEEPELRDG LKTLSLHYFEEPELRDGFVQNVHTPRVRVD K T L L R D 0 1 0 0 0 0 3 0 1 0 3 0 0 1 1 1 1 0 1 0 0 0 13 0 1632.8148 Q10570;E9PIM1 Q10570 117 129 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2;3 1.1553E-05 96.015 By matching By matching By MS/MS By matching 1 1 5 3 1.073 0.97532 48.642 10 Median 0.9684 0.97398 NaN 1 0 Median 1.0322 0.8711 NaN 1 0 Median 0.86584 0.90697 65.684 5 0 Median 1.1223 0.97969 27.874 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51797000 25688000 26109000 1450100 786660 663440 1555000 744050 810900 48123000 23855000 24269000 668930 302590 366340 0 0 0 0 0 0 33638 2753 35365 176524;176525;176526;176527;176528;176529;176530;176531;176532;176533 178436;178437;178438;178439;178440;178441 178436 6 TLSPEFNER DKNRGTKRRTSQKKRTLSPEFNERFEWELP TSQKKRTLSPEFNERFEWELPLDEAQRRKL R T L E R F 0 1 1 0 0 0 2 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 9 0 1091.5247 Q9BSJ8 Q9BSJ8 1032 1040 ESYT1 Extended synaptotagmin-1 yes yes 2 0.0014358 81.548 By matching By MS/MS 1 2 1.0982 0.91318 17.36 3 Median 1.1178 1.0808 NaN 1 0 Median 0.9453 0.83516 12.63 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27840000 14006000 13834000 5216400 2728300 2488100 22624000 11278000 11346000 0 0 0 0 0 0 0 0 0 0 0 0 33639 3816 35366 176534;176535;176536 178442;178443 178442 2 TLSPTPSAEGYQDVR YDDKQERQSLGESPRTLSPTPSAEGYQDVR TLSPTPSAEGYQDVRDRMIHRSTSQGSINS R T L V R D 1 1 0 1 0 1 1 1 0 0 1 0 0 0 2 2 2 0 1 1 0 0 15 0 1619.7791 J3QSX6;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639;H0Y7N6;F6XFR5;A0A494C1P1;A0A494C1G0 J3QSX6 87 101 ABLIM1 Actin-binding LIM protein 1 yes no 2 1.2032E-06 95.401 By MS/MS By matching 1 1 0.90195 0.84878 17.16 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72871 0.75179 NaN 1 0 Median 1.1164 0.95828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7439100 3986500 3452600 0 0 0 0 0 0 6554300 3595100 2959300 884730 391370 493360 0 0 0 0 0 0 33640 1356 35367 176537;176538 178444;178445 178445 2 TLSQAIVK APMLPPPKNKEDFEKTLSQAIVKVVIPTER NKEDFEKTLSQAIVKVVIPTERNLLALIHR K T L V K V 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 858.51747 O15042;E7ET15;H0Y8D9 O15042 411 418 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.01208 60.799 By MS/MS By MS/MS 2 1 1.0912 1.0037 3.0108 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95568 0.98253 NaN 1 0 Median 1.2458 1.0253 NaN 1 0 Median 9912900 4908400 5004500 0 0 0 0 0 0 0 0 0 0 0 0 6696100 3551200 3144900 3216800 1357200 1859600 33641 1515 35368 176539;176540;176541 178446;178447;178448;178449 178449 4 TLSQWIAENQDSLGSK PRGDAKILDNRISQKTLSQWIAENQDSLGS LSQWIAENQDSLGSKVKDTFNGNLPFLFKV K T L S K V 1 0 1 1 0 2 1 1 0 1 2 1 0 0 0 3 1 1 0 0 0 0 16 0 1775.869 P34949;H3BPP3;H3BPB8;H3BPM5;F5GX71;H3BUZ9;H3BNY8;H3BT48;H3BP57;H3BMZ9;H3BPU7;H3BT46;H3BN01;B4DYB8;H3BQX0;H3BU66;H3BUG1 P34949 70 85 MPI Mannose-6-phosphate isomerase yes no 2 1.86E-14 126.76 By MS/MS By MS/MS 1 2 1.2167 1.0487 16.872 3 Median 0.94134 0.87155 NaN 1 0 Median 1.3129 1.1314 10.738 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18694000 8807100 9886800 12944000 6411300 6532200 5750500 2395900 3354600 0 0 0 0 0 0 0 0 0 0 0 0 33642 1004 35369 176542;176543;176544 178450;178451;178452;178453 178452 4 TLSSPSNRPSGETSVPPPPAVGR SRMSPKAQRPLRGAKTLSSPSNRPSGETSV PSGETSVPPPPAVGRMYPPRSPKSAAPAPI K T L G R M 1 2 1 0 0 0 1 2 0 0 1 0 0 0 6 5 2 0 0 2 0 0 23 1 2289.1713 Q8WWM7 Q8WWM7 421 443 ATXN2L Ataxin-2-like protein yes yes 3 1.0102E-11 56.055 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 1 0.3944 0.40987 23.641 10 Median 0.37055 0.41169 NaN 1 0 Median 0.45268 0.44787 31.431 3 0 Median 0.2948 0.34948 21.915 2 1 Median 0.40731 0.37387 9.4683 3 1 Median NaN NaN NaN 0 0 Median 0.38158 0.39148 NaN 1 0 Median 51703000 36790000 14913000 18612000 13565000 5047600 9939100 6938300 3000900 10730000 8049100 2681200 11916000 7953400 3962200 0 0 0 505680 284310 221370 33643 3511 35370 176545;176546;176547;176548;176549;176550;176551;176552;176553;176554 178454;178455;178456;178457;178458;178459;178460;178461;178462;178463 178462 10 TLSSSSMDLSR EEPTQPGGTGLSDSRTLSSSSMDLSRRSSL SDSRTLSSSSMDLSRRSSLVG_________ R T L S R R 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 5 1 0 0 0 0 0 11 0 1182.5551 Q9H0B6 Q9H0B6 606 616 KLC2 Kinesin light chain 2 yes yes 2 0.004632 68.893 By MS/MS 1 1.0321 0.89556 NaN 1 Median NaN NaN NaN 0 0 Median 1.0321 0.89556 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3642000 2013300 1628700 0 0 0 3642000 2013300 1628700 0 0 0 0 0 0 0 0 0 0 0 0 33644 3922 35371 176555 178464 178464 1 TLSSVQNEVQEALQR RAIESMEQQLSELKKTLSSVQNEVQEALQR TLSSVQNEVQEALQRASTALSNEQQARRDC K T L Q R A 1 1 1 0 0 3 2 0 0 0 2 0 0 0 0 2 1 0 0 2 0 0 15 0 1700.8693 P12270 P12270 1039 1053 TPR Nucleoprotein TPR yes yes 2;3 7.8166E-27 201.6 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 5 2 1 1 1.1261 1.1881 24.647 14 Median 1.2474 1.2172 3.2397 2 1 Median 1.564 1.3291 24.554 3 0 Median 1.064 1.1865 14.764 5 2 Median 1.5902 1.3917 60.387 2 0 Median 0.95224 1.0004 NaN 1 1 Median 0.97886 0.83063 NaN 1 0 Median 73018000 33661000 39357000 10259000 4294700 5963900 6932200 3247800 3684300 51889000 24278000 27611000 483510 163060 320450 3328500 1603300 1725200 126530 74185 52345 33645 1978 35372 176556;176557;176558;176559;176560;176561;176562;176563;176564;176565;176566;176567;176568;176569 178465;178466;178467;178468;178469;178470;178471;178472;178473;178474;178475 178470 11 TLSTSDDVEDRENEK SKSKDPSGLLISVIRTLSTSDDVEDRENEK TLSTSDDVEDRENEKGRLEEAYEKCDRDLD R T L E K G 0 1 1 3 0 0 3 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 15 1 1736.7701 Q96A65 Q96A65 30 44 EXOC4 Exocyst complex component 4 yes yes 3 0.064877 11.262 By matching By MS/MS By MS/MS 1 1 1 0.8694 0.98836 45.322 3 Median 0.49336 0.51011 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8694 0.98836 NaN 1 0 Median 1.2638 1.2145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4041000 1972800 2068200 922070 506570 415500 0 0 0 2353100 1141600 1211500 765750 324630 441120 0 0 0 0 0 0 33646 3595 35373 176570;176571;176572 178476;178477 178477 2 TLSVQEAAAYLK AQLAGDHECGSSSQRTLSVQEAAAYLKDLG SQRTLSVQEAAAYLKDLGPEYEGIFNTSLQ R T L L K D 3 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 1 0 1 1 0 0 12 0 1292.6976 Q9Y2U8 Q9Y2U8 554 565 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 0.0010358 57.859 By matching By MS/MS 1 2 0.93456 1.0218 67.977 3 Median 0.30952 0.35181 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0663 1.1278 13.959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11236000 5621000 5615400 472100 334330 137780 0 0 0 10764000 5286700 5477600 0 0 0 0 0 0 0 0 0 33647 4392 35374 176573;176574;176575 178478 178478 1 TLSYLLPAIVHINHQPFLER SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ LPAIVHINHQPFLERGDGPICLVLAPTREL K T L E R G 1 1 1 0 0 1 1 0 2 2 4 0 0 1 2 1 1 0 1 1 0 0 20 0 2360.3005 J3KTA4;P17844;J3QRQ7;J3QRN5 J3KTA4 145 164 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 3;4 5.3983E-14 99.092 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 7 4 2 4 6 0.96546 0.84751 19.035 25 Median 1 0.95652 8.291 3 0 Median 0.97868 0.84718 9.5825 6 0 Median 0.93652 0.95952 20.546 4 0 Median 1.1845 1.0338 47.693 2 0 Median 0.82528 0.82524 9.7993 4 0 Median 0.96621 0.79307 19.419 6 0 Median 422460000 221130000 201330000 13060000 6416500 6643700 33318000 15698000 17620000 319340000 170120000 149210000 638550 263790 374750 31686000 16495000 15191000 24420000 12135000 12285000 33648 1334 35375 176576;176577;176578;176579;176580;176581;176582;176583;176584;176585;176586;176587;176588;176589;176590;176591;176592;176593;176594;176595;176596;176597;176598;176599;176600;176601 178479;178480;178481;178482;178483;178484;178485;178486;178487;178488;178489;178490;178491;178492;178493;178494;178495;178496;178497;178498;178499;178500;178501;178502;178503;178504;178505 178485 27 TLTAAAVSGAQPILSK PHIKTVCDAAEKGVRTLTAAAVSGAQPILS LTAAAVSGAQPILSKLEPQIASASEYAHRG R T L S K L 4 0 0 0 0 1 0 1 0 1 2 1 0 0 1 2 2 0 0 1 0 0 16 0 1526.8668 O60664;K7EL96;K7ER39 O60664 69 84 PLIN3 Perilipin-3 yes no 2 7.4665E-07 94.191 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 1 0.9755 0.86487 39.79 8 Median 0.85165 0.78388 43.67 3 0 Plateau 0.9755 0.81359 7.3576 2 0 Median 1.2138 1.2493 50.726 2 0 Median 1.1304 1.014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94665000 47968000 46697000 76678000 40435000 36242000 2780000 1379900 1400100 8844800 3783000 5061700 6362800 2370000 3992800 0 0 0 0 0 0 33649 1624 35376 176602;176603;176604;176605;176606;176607;176608;176609 178506;178507;178508;178509;178510;178511;178512;178513;178514;178515;178516;178517 178506 12 TLTAVHDAILEDLVFPSEIVGK RKSRTKNKQKRPRSRTLTAVHDAILEDLVF AILEDLVFPSEIVGKRIRVKLDGSRLIKVH R T L G K R 2 0 0 2 0 0 2 1 1 2 3 1 0 1 1 1 2 0 0 3 0 0 22 0 2366.2733 P62081;A0A2R8Y623;B5MCP9 P62081 121 142 RPS7 40S ribosomal protein S7 yes no 3 0.00021473 27.947 By matching By MS/MS By matching 1 2 2 0.95315 0.829 11.81 5 Median 0.85419 0.829 NaN 1 0 Median 0.96248 0.83058 2.4444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0006 0.81073 23.351 2 0 Median 7967900 3907700 4060200 859190 462860 396340 6200800 2918100 3282700 0 0 0 0 0 0 0 0 0 907880 526760 381120 33650 2568 35377 176610;176611;176612;176613;176614 178518;178519;178520;178521 178521 4 TLTAVHDAILEDLVFPSEIVGKR RKSRTKNKQKRPRSRTLTAVHDAILEDLVF ILEDLVFPSEIVGKRIRVKLDGSRLIKVHL R T L K R I 2 1 0 2 0 0 2 1 1 2 3 1 0 1 1 1 2 0 0 3 0 0 23 1 2522.3744 P62081;A0A2R8Y623;B5MCP9 P62081 121 143 RPS7 40S ribosomal protein S7 yes no 4 4.366E-20 92.098 By MS/MS By matching 1 1 0.79812 0.68373 40.756 2 Median NaN NaN NaN 0 0 Median 0.99426 0.9121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64066 0.51254 NaN 1 0 Median 30239000 14443000 15796000 0 0 0 29847000 14239000 15608000 0 0 0 0 0 0 0 0 0 391800 203680 188120 33651 2568 35378 176615;176616 178522;178523 178522 2 TLTDELAALQITGVK LAYCSSKFAAVGFHKTLTDELAALQITGVK TLTDELAALQITGVKTTCLCPNFVNTGFIK K T L V K T 2 0 0 1 0 1 1 1 0 1 3 1 0 0 0 0 3 0 0 1 0 0 15 0 1571.877 D6RCD0;Q8NBQ5 D6RCD0 154 168 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes no 2 2.2526E-09 114.82 By MS/MS By matching By matching By matching 2 1 1 1 1.8097 1.5115 15.704 5 Median NaN NaN NaN 0 0 Median 1.5348 1.2974 2.1439 2 0 Median 1.9464 1.8988 NaN 1 0 Median 1.8449 1.5361 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8097 1.5115 NaN 1 0 Median 13534000 5118900 8414900 0 0 0 12286000 4690300 7596100 522430 160410 362020 87279 27362 59918 0 0 0 637720 240870 396840 33652 819 35379 176617;176618;176619;176620;176621 178524;178525 178525 2 TLTDEVNSPDSDRR DDKNPVSRRKKISAKTLTDEVNSPDSDRRD KTLTDEVNSPDSDRRDKKGGNYKKRKRSPS K T L R R D 0 2 1 3 0 0 1 0 0 0 1 0 0 0 1 2 2 0 0 1 0 0 14 1 1603.7438 Q8TAQ2;F8VXC8 Q8TAQ2 276 289 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 1.7115E-11 170.18 By MS/MS By MS/MS By MS/MS By matching 1 4 5 1 1.011 0.93963 17.854 11 Median NaN NaN NaN 0 0 Median 1.1064 1.0666 NaN 1 1 Median 0.69593 0.825 19.286 4 1 Median 1.0674 0.93963 11.298 5 0 Median 0.97322 1.0528 NaN 1 0 Median NaN NaN NaN 0 0 Median 48219000 27137000 21082000 0 0 0 2337900 1104500 1233400 28250000 17272000 10978000 15578000 7691800 7886200 2052600 1068600 983930 0 0 0 33653 3455 35380 176622;176623;176624;176625;176626;176627;176628;176629;176630;176631;176632 178526;178527;178528;178529;178530;178531;178532;178533;178534;178535;178536;178537;178538;178539;178540;178541 178535 16 TLTDLLLR TLKVFQDSKAWENFRTLTDLLLRFEPNLDV KAWENFRTLTDLLLRFEPNLDVEQAEVNFG R T L L R F 0 1 0 1 0 0 0 0 0 0 4 0 0 0 0 0 2 0 0 0 0 0 8 0 943.57023 O76024 O76024 376 383 WFS1 Wolframin yes yes 2 0.028842 40.103 By matching By matching By MS/MS 2 3 1 1.2405 1.1434 9.2782 6 Median 1.135 1.1434 0.020246 2 0 Median 1.2996 1.1401 7.8677 3 0 Median 1.2312 1.3877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8222500 3555700 4666700 3362300 1407400 1954900 3711600 1652600 2059100 1148500 495750 652790 0 0 0 0 0 0 0 0 0 33654 1717 35381 176633;176634;176635;176636;176637;176638 178542 178542 1 TLTEDEIATILQSTLK CGAGSVSDIIRLRNKTLTEDEIATILQSTL LTEDEIATILQSTLKGLEYLHFMRKIHRDI K T L L K G 1 0 0 1 0 1 2 0 0 2 3 1 0 0 0 1 4 0 0 0 0 0 16 0 1774.9564 Q13043;A0A087WVN8 Q13043 120 135 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit yes no 2 1.5849E-07 87.618 By MS/MS 1 1.33 1.1448 NaN 1 Median NaN NaN NaN 0 0 Median 1.33 1.1448 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1819000 721700 1097300 0 0 0 1819000 721700 1097300 0 0 0 0 0 0 0 0 0 0 0 0 33655 2780 35382 176639 178543 178543 1 TLTELILDAQEHVK KLKWVEISNEVRKFRTLTELILDAQEHVKN RTLTELILDAQEHVKNPYKGKKLKKHPDFP R T L V K N 1 0 0 1 0 1 2 0 1 1 3 1 0 0 0 0 2 0 0 1 0 0 14 0 1608.8723 P17480;E9PKP7 P17480 84 97 UBTF Nucleolar transcription factor 1 yes no 2;3 7.689E-08 100.48 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 5 1.1856 1.0305 27.447 10 Median NaN NaN NaN 0 0 Median 0.61603 0.55428 NaN 1 0 Median 0.92508 0.99659 5.4025 2 0 Median 1.3078 1.1613 NaN 1 0 Median 0.99314 1.0202 NaN 1 0 Median 1.5377 1.2933 19.842 5 0 Median 87600000 42432000 45169000 0 0 0 910320 564160 346160 70398000 34218000 36180000 218460 67953 150500 7043800 3219600 3824200 9030300 4362200 4668100 33656 2040 35383 176640;176641;176642;176643;176644;176645;176646;176647;176648;176649 178544;178545;178546;178547;178548;178549;178550;178551 178551 8 TLTELILDAQEHVKNPYK KLKWVEISNEVRKFRTLTELILDAQEHVKN ELILDAQEHVKNPYKGKKLKKHPDFPKKPL R T L Y K G 1 0 1 1 0 1 2 0 1 1 3 2 0 0 1 0 2 0 1 1 0 0 18 1 2111.1263 P17480;E9PKP7 P17480 84 101 UBTF Nucleolar transcription factor 1 yes no 3 0.00086491 32.387 By matching By MS/MS By matching 1 1 2 0.97776 0.9296 46.331 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.35137 0.42625 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0641 1.1922 NaN 1 0 Median 1.0307 0.9296 21.109 2 0 Median 8039300 5106400 2932900 0 0 0 0 0 0 4265500 3365800 899610 0 0 0 3429200 1567900 1861300 344620 172640 171980 33657 2040 35384 176650;176651;176652;176653 178552;178553 178552 2 TLTEPSVDFNHSDDFTPISTVQK GKLSSESKTSNRRIRTLTEPSVDFNHSDDF FNHSDDFTPISTVQKTLQLETSFMGNKHIE R T L Q K T 0 0 1 3 0 1 1 0 1 1 1 1 0 2 2 3 4 0 0 2 0 0 23 0 2577.2235 Q6R327 Q6R327 1133 1155 RICTOR Rapamycin-insensitive companion of mTOR yes yes 3 0.0075881 21.129 By MS/MS 1 0.68737 0.66064 NaN 1 Median 0.68737 0.66064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5816600 3539000 2277600 5816600 3539000 2277600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33658 3179 35385 176654 178554 178554 1 TLTGFGPGLAMETALR FTQCRRPLPTSTNVKTLTGFGPGLAMETAL LTGFGPGLAMETALRSPDRPECIRLYAPPF K T L L R S 2 1 0 0 0 0 1 3 0 0 3 0 1 1 1 0 3 0 0 0 0 0 16 0 1633.8498 Q9UHV7 Q9UHV7 1734 1749 MED13 Mediator of RNA polymerase II transcription subunit 13 yes yes 2 0.0069223 30.872 By MS/MS 1 0.78006 0.86734 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78006 0.86734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1149600 675100 474500 0 0 0 0 0 0 1149600 675100 474500 0 0 0 0 0 0 0 0 0 33659 4283 35386 176655 178555;178556 178556 2 TLTGTAALTVQSQEDNLR TKHLHLRCSVDFTRRTLTGTAALTVQSQED GTAALTVQSQEDNLRSLVLDTKDLTIEKVV R T L L R S 2 1 1 1 0 2 1 1 0 0 3 0 0 0 0 1 4 0 0 1 0 0 18 0 1916.9803 P09960;B4DEH5 P09960 34 51 LTA4H Leukotriene A-4 hydrolase yes no 2;3 6.4778E-16 168.31 By MS/MS By matching By matching 2 1 1 1.186 1.0718 13.11 4 Median 1.1049 1.0455 3.5907 2 0 Median 1.2393 1.0712 NaN 1 0 Median 1.2758 1.364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39983000 18716000 21267000 36237000 17040000 19196000 1151600 525150 626470 2594300 1150700 1443600 0 0 0 0 0 0 0 0 0 33660 1924 35387 176656;176657;176658;176659 178557;178558;178559;178560;178561 178559 5 TLTLVDTGIGMTK GKELKIDIIPNPQERTLTLVDTGIGMTKAD ERTLTLVDTGIGMTKADLINNLGTIAKSGT R T L T K A 0 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 4 0 0 1 0 0 13 0 1348.7272 P08238 P08238 83 95 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 2.352E-11 164.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19 19 6 2 7 2 1.1983 1.0787 47.187 55 Median 1.1803 1.0908 51.375 19 5 Median 1.1916 1.0169 38.959 19 0 Median 1.1339 1.2223 17.941 6 3 Median 1.1862 1.0271 1.5451 2 0 Median 1.6951 1.7295 24.225 7 2 Median 2.2309 1.8117 98.329 2 1 Median 2542400000 1139200000 1403200000 1301700000 572330000 729360000 1062300000 490020000 572310000 127300000 58531000 68772000 14276000 6562300 7713800 33399000 11044000 22355000 3363700 681550 2682100 33661 1899 35388 176660;176661;176662;176663;176664;176665;176666;176667;176668;176669;176670;176671;176672;176673;176674;176675;176676;176677;176678;176679;176680;176681;176682;176683;176684;176685;176686;176687;176688;176689;176690;176691;176692;176693;176694;176695;176696;176697;176698;176699;176700;176701;176702;176703;176704;176705;176706;176707;176708;176709;176710;176711;176712;176713;176714 178562;178563;178564;178565;178566;178567;178568;178569;178570;178571;178572;178573;178574;178575;178576;178577;178578;178579;178580;178581;178582;178583;178584;178585;178586;178587;178588;178589;178590;178591;178592;178593;178594;178595;178596;178597;178598;178599;178600;178601;178602;178603;178604;178605;178606;178607;178608;178609;178610;178611;178612;178613;178614;178615;178616;178617;178618;178619;178620;178621;178622;178623;178624;178625 178625 64 TLTLVDTGIGMTKADLINNLGTIAK GKELKIDIIPNPQERTLTLVDTGIGMTKAD MTKADLINNLGTIAKSGTKAFMEALQAGAD R T L A K S 2 0 2 2 0 0 0 3 0 3 4 2 1 0 0 0 5 0 0 1 0 0 25 1 2572.4146 P08238 P08238 83 107 HSP90AB1 Heat shock protein HSP 90-beta yes yes 3 0.0015538 32.956 By matching By MS/MS 1 2 1.1646 1.1281 13.445 3 Median 1.3455 1.3982 NaN 1 0 Median 1.1454 1.1097 2.3233 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29144000 14388000 14757000 668970 284760 384210 28476000 14103000 14373000 0 0 0 0 0 0 0 0 0 0 0 0 33662 1899 35389 176715;176716;176717 178626;178627 178627 2 TLTPAGDLQETFSGMDQVR IPDSGHLYASIRAGRTLTPAGDLQETFSGM AGDLQETFSGMDQVRLMKRIAEMTDIKPIL R T L V R L 1 1 0 2 0 2 1 2 0 0 2 0 1 1 1 1 3 0 0 1 0 0 19 0 2064.9786 Q5JRX3;A0A0A0MRX9;H0Y7L7 Q5JRX3 729 747 PITRM1 Presequence protease, mitochondrial yes no 2;3 1.1187E-07 71.548 By MS/MS By MS/MS 2 3 0.89365 0.91298 7.1199 5 Median 0.91149 0.8952 4.9912 2 0 Median NaN NaN NaN 0 0 Median 0.85854 0.91298 9.4036 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10027000 5061300 4965200 5559900 2738600 2821300 0 0 0 4466600 2322700 2143900 0 0 0 0 0 0 0 0 0 33663 3050 35390 176718;176719;176720;176721;176722 178628;178629;178630;178631;178632;178633 178628 6 TLTPDQWAR CLAEELPHIHAFEQKTLTPDQWARERQK__ HAFEQKTLTPDQWARERQK___________ K T L A R E 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 9 0 1086.5458 Q9H3K6;A0A087WZT3 Q9H3K6 74 82 BOLA2 BolA-like protein 2 yes no 2 0.00046424 124.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.0248 0.91689 8.3893 7 Median 0.95663 0.92319 NaN 1 0 Median 1.038 0.86437 2.3114 2 0 Median 0.95914 0.9657 7.3361 2 0 Median 1.0769 0.84679 NaN 1 0 Median 1.1719 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 302680000 147620000 155060000 116760000 57606000 59154000 173160000 83853000 89303000 8499100 4134300 4364900 3872400 1857300 2015100 397390 169170 228220 0 0 0 33664 3955 35391 176723;176724;176725;176726;176727;176728;176729 178634;178635;178636;178637;178638;178639;178640;178641;178642;178643;178644;178645;178646 178636 13 TLTPIIQEYFEHGDTNEVAEMLR YETVVLPLDERAFEKTLTPIIQEYFEHGDT YFEHGDTNEVAEMLRDLNLGEMKSGVPVLA K T L L R D 1 1 1 1 0 1 4 1 1 2 2 0 1 1 1 0 3 0 1 1 0 0 23 0 2705.3007 Q53EL6;Q5VZS7 Q53EL6 167 189 PDCD4 Programmed cell death protein 4 yes no 3 0.0075881 21.129 By MS/MS By MS/MS By MS/MS 1 2 1 0.80779 0.76824 20.351 4 Median 0.61262 0.60626 NaN 1 0 Median 1.0037 0.87537 18.503 2 0 Median 0.72828 0.76847 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5860000 3037400 2822600 1297300 821050 476260 3138600 1419000 1719600 1424100 797300 626790 0 0 0 0 0 0 0 0 0 33665 3026 35392 176730;176731;176732;176733 178647;178648;178649 178649 3 TLTPISAAYAR SEDEAKVCMVYDLYKTLTPISAAYARARGA DLYKTLTPISAAYARARGADRMSSFGDFVA K T L A R A 3 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1162.6346 P31939 P31939 295 305 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 2 3.1709E-05 122.13 By MS/MS By MS/MS 1 1 0.98047 0.91487 NaN 1 Median 0.98047 0.91487 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 117090000 57260000 59829000 117090000 57260000 59829000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33666 2207 35393 176734;176735 178650;178651 178650 2 TLTPSYYR AKLAIWDTAGQERFRTLTPSYYRGAQGVIL AGQERFRTLTPSYYRGAQGVILVYDVTRRD R T L Y R G 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 2 0 2 0 0 0 8 0 999.50255 Q9NP72;A0A087X163;H0Y6T8 Q9NP72 72 79 RAB18 Ras-related protein Rab-18 yes no 2 0.040404 55.676 By MS/MS 1 1.1635 0.98762 NaN 1 Median NaN NaN NaN 0 0 Median 1.1635 0.98762 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2084500 1046500 1038000 0 0 0 2084500 1046500 1038000 0 0 0 0 0 0 0 0 0 0 0 0 33667 4041 35394 176736 178652 178652 1 TLTSDVANLANEKEELNNK TEKDATIASLEETNRTLTSDVANLANEKEE DVANLANEKEELNNKLKDVQEQLSRLKDEE R T L N K L 2 0 4 1 0 0 3 0 0 0 3 2 0 0 0 1 2 0 0 1 0 0 19 1 2102.0491 O75116;E9PF63;Q14DU5 O75116 977 995 ROCK2 Rho-associated protein kinase 2 yes no 3 3.6369E-08 73.138 By MS/MS By matching By matching 1 1 1 1.0262 1.1865 57.55 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0262 1.1865 NaN 1 0 Median 0.95754 0.89456 NaN 1 0 Median 2.5731 2.7077 NaN 1 0 Median NaN NaN NaN 0 0 Median 13419000 5996100 7422700 0 0 0 0 0 0 10673000 4974400 5699100 1061100 527770 533290 1684300 493940 1190400 0 0 0 33668 1644 35395 176737;176738;176739 178653 178653 1 TLTSIVHLER ITDKQLMEIKAASLRTLTSIVHLERTPKLS AASLRTLTSIVHLERTPKLSSIIDCTGTAS R T L E R T 0 1 0 0 0 0 1 0 1 1 2 0 0 0 0 1 2 0 0 1 0 0 10 0 1167.6612 Q7Z6Z7 Q7Z6Z7 330 339 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00022687 128.36 By MS/MS By matching 2 1 0.67545 0.6655 124.04 3 Median 0.84498 0.82615 30.582 2 0 Median 0.095617 0.099603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40452000 22725000 17727000 32781000 15890000 16891000 7670500 6834900 835590 0 0 0 0 0 0 0 0 0 0 0 0 33669 3253 35396 176740;176741;176742 178654;178655 178654 2 TLTTDILFGLLK LTKFSVIILDEAHERTLTTDILFGLLKKLF HERTLTTDILFGLLKKLFQEKSPNRKEHLK R T L L K K 0 0 0 1 0 0 0 1 0 1 4 1 0 1 0 0 3 0 0 0 0 0 12 0 1333.7857 Q8IX18;J3KTK0;J3KSW6 Q8IX18 179 190 DHX40 Probable ATP-dependent RNA helicase DHX40 yes no 2 0.029939 28.399 By matching By MS/MS By matching 1 1 1 1.0733 1.147 66.034 3 Median NaN NaN NaN 0 0 Median 3.3787 2.9593 NaN 1 0 Median 1.0733 1.147 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78915 0.83073 NaN 1 0 Median NaN NaN NaN 0 0 Median 1084300 439010 645310 0 0 0 313380 82927 230450 694820 327140 367690 0 0 0 76117 28941 47175 0 0 0 33670 3332 35397 176743;176744;176745 178656 178656 1 TLTTVQGIADDYDK EDYIHIRIQQRNGRKTLTTVQGIADDYDKK KTLTTVQGIADDYDKKKLVKAFKKKFACNG K T L D K K 1 0 0 3 0 1 0 1 0 1 1 1 0 0 0 0 3 0 1 1 0 0 14 0 1538.7464 K7EM18;P41567;O60739 K7EM18 43 56 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 2 2.4964E-05 143.97 By MS/MS By MS/MS By matching 1 1 1 1.0096 0.82326 18.924 3 Median NaN NaN NaN 0 0 Median 0.91367 0.76516 NaN 1 0 Median 1.153 1.0947 NaN 1 0 Median 1.0096 0.82326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35441000 16734000 18707000 0 0 0 1765200 779840 985330 32664000 15467000 17198000 1011600 487230 524370 0 0 0 0 0 0 33671 1380 35398 176746;176747;176748 178657;178658;178659 178657 3 TLTTVQGIADDYDKK EDYIHIRIQQRNGRKTLTTVQGIADDYDKK TLTTVQGIADDYDKKKLVKAFKKKFACNGT K T L K K K 1 0 0 3 0 1 0 1 0 1 1 2 0 0 0 0 3 0 1 1 0 0 15 1 1666.8414 K7EM18;P41567;O60739 K7EM18 43 57 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 2;3 1.3939E-07 128.85 By matching By MS/MS By MS/MS 1 1 2 0.97482 0.96713 9.2579 4 Median 1.1072 1.0368 NaN 1 0 Median 0.96527 0.83679 NaN 1 0 Median 0.95589 0.96713 3.6417 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31314000 14971000 16343000 1671400 772520 898900 3186000 1648400 1537600 26457000 12550000 13906000 0 0 0 0 0 0 0 0 0 33672 1380 35399 176749;176750;176751;176752 178660;178661;178662;178663;178664 178662 5 TLTTVQGIADDYDKKK EDYIHIRIQQRNGRKTLTTVQGIADDYDKK LTTVQGIADDYDKKKLVKAFKKKFACNGTV K T L K K L 1 0 0 3 0 1 0 1 0 1 1 3 0 0 0 0 3 0 1 1 0 0 16 2 1794.9363 K7EM18;P41567;O60739 K7EM18 43 58 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 3;4 0.00021903 43.798 By MS/MS By MS/MS By MS/MS 1 2 2 1.043 1.0535 25.06 5 Median 1.043 1.0535 NaN 1 0 Median 1.0263 0.81883 0.88085 2 0 Median 1.1965 1.3265 13.538 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61791000 26372000 35419000 1983200 840380 1142900 10149000 3870100 6279100 49659000 21662000 27997000 0 0 0 0 0 0 0 0 0 33673 1380 35400 176753;176754;176755;176756;176757 178665;178666;178667;178668;178669 178666 5 TLTVLHPLK LLEELGINFDHIWQKTLTVLHPLKVADGSI DHIWQKTLTVLHPLKVADGSIMNETDLAGP K T L L K V 0 0 0 0 0 0 0 0 1 0 3 1 0 0 1 0 2 0 0 1 0 0 9 0 1020.6332 E5RGR9;E5RHH4;Q969M3 E5RGR9 53 61 YIPF5 Protein YIPF;Protein YIPF5 yes no 2 0.0023677 72.485 By matching By MS/MS By matching 1 2 1 0.9774 0.94115 16.019 4 Median 0.91838 0.92018 NaN 1 0 Median 0.98097 0.86454 15.192 2 0 Median 1.0402 1.1466 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27232000 12554000 14678000 12085000 6213100 5871900 14423000 5950400 8472700 724200 390550 333650 0 0 0 0 0 0 0 0 0 33674 840 35401 176758;176759;176760;176761 178670;178671 178670 2 TLVAHYPPVQVLFEK FIGQFSDDRHCSRFRTLVAHYPPVQVLFEK TLVAHYPPVQVLFEKGNLSKETKTILKSSL R T L E K G 1 0 0 0 0 1 1 0 1 0 2 1 0 1 2 0 1 0 1 3 0 0 15 0 1739.961 P52701;A0A494C0M1;A0A087WWJ1 P52701 584 598 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 5.0406E-09 128.36 By MS/MS By MS/MS By matching By matching By matching 2 2 4 2 1 0.78402 0.77019 29.844 11 Median 0.57203 0.5507 2.6277 2 0 Median NaN NaN NaN 0 0 Median 0.66705 0.71761 10.624 2 0 Median 0.84757 0.74 11.904 4 0 Median 1.1095 1.1191 44.102 2 0 Median 1.3395 1.0974 NaN 1 0 Median 63298000 37680000 25618000 39656000 23775000 15881000 0 0 0 18404000 11147000 7257800 2460100 1368200 1091800 2007600 1080400 927130 770270 309840 460430 33675 2453 35402 176762;176763;176764;176765;176766;176767;176768;176769;176770;176771;176772 178672;178673;178674;178675;178676;178677;178678 178674 7 TLVAVKPDGVQR PPSALKRGPSWTRERTLVAVKPDGVQRRLV RERTLVAVKPDGVQRRLVGDVIQRFERRGF R T L Q R R 1 1 0 1 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 3 0 0 12 1 1281.7405 Q4TT34;F2Z2X0;O00746;H0Y6J0;A0A087WVT9 Q4TT34 48 59 NME4 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase, mitochondrial yes no 2;3 0.00018393 87.913 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.3179 1.1666 40.536 9 Median 0.62057 0.61376 2.1657 2 0 Median 1.3636 1.203 1.8349 2 1 Median 0.53472 0.54967 15.116 2 0 Median 1.32 1.1685 11.538 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43182000 25286000 17896000 15639000 9996700 5642400 4588200 1920200 2668000 16543000 10717000 5826500 6410900 2652200 3758700 0 0 0 0 0 0 33676 992 35403 176773;176774;176775;176776;176777;176778;176779;176780;176781 178679;178680;178681;178682;178683;178684;178685;178686;178687;178688;178689;178690;178691 178683 13 TLVEANNEHMVEVR LAGALKLDLGLFSTKTLVEANNEHMVEVRT KTLVEANNEHMVEVRTQLLQPADENWDPTG K T L V R T 1 1 2 0 0 0 3 0 1 0 1 0 1 0 0 0 1 0 0 3 0 0 14 0 1639.7988 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248;F5GWV3;H0Y5J3;H0Y6I7 O15550 988 1001 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 2;3 7.6282E-08 117.93 By MS/MS By MS/MS 3 2 0.91788 1.0092 31.775 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91788 1.0092 32.766 3 0 Median 0.94091 0.81823 38.406 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22740000 11817000 10923000 0 0 0 0 0 0 18051000 9236200 8815200 4688400 2581000 2107400 0 0 0 0 0 0 33677 111 35404 176782;176783;176784;176785;176786 178692;178693;178694;178695 178694 4 TLVECWK HPKRAVFRHNLEIIKTLVECWKDCLSIPYR RHNLEIIKTLVECWKDCLSIPYRLIFEKFS K T L W K D 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 934.45824 P78527 P78527 2240 2246 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.021555 58.981 By MS/MS By matching 1 1 0.73214 0.71759 4.119 2 Median NaN NaN NaN 0 0 Median 0.7936 0.69699 NaN 1 0 Median 0.67544 0.7388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10016000 6109800 3906000 0 0 0 7904700 4922200 2982400 2111100 1187600 923580 0 0 0 0 0 0 0 0 0 33678 2647 35405 176787;176788 178696 178696 1 TLVEDLFADK YGFAIHHAGMTRVDRTLVEDLFADKHIQVL TRVDRTLVEDLFADKHIQVLVSTATLAWGV R T L D K H 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1149.5918 O75643;A0A494C1A5 O75643 795 804 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.01948 47.198 By matching By matching By MS/MS By MS/MS 1 4 3 4 1.1598 1.0782 16.292 12 Median 1.0177 1.0037 NaN 1 0 Median 1.2224 1.0782 8.4352 4 0 Median 0.95057 1.0447 24.802 3 1 Median 1.2967 1.1951 15.132 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23594000 11076000 12518000 536760 279090 257660 9521200 4228400 5292800 11229000 5612100 5616500 2307200 956050 1351200 0 0 0 0 0 0 33679 1688 35406 176789;176790;176791;176792;176793;176794;176795;176796;176797;176798;176799;176800 178697;178698;178699 178698 3 TLVEHVGMK DKKMKENGREGCFAKTLVEHVGMKNLKSWA EGCFAKTLVEHVGMKNLKSWASVNRGAIIL K T L M K N 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 2 0 0 9 0 1012.5376 Q15397 Q15397 580 588 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0036742 63.48 By MS/MS By MS/MS By matching 1 3 1 0.97614 0.86228 57.714 5 Median NaN NaN NaN 0 0 Median 0.37789 0.32257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2342 1.269 24.978 3 0 Median 0.97614 0.79439 NaN 1 0 Median 15538000 7989400 7549000 0 0 0 4118600 2805300 1313300 0 0 0 0 0 0 10811000 4926900 5884500 608340 257190 351150 33680 2947 35407 176801;176802;176803;176804;176805 178700;178701;178702 178700 3 TLVFEQR AGLDIDFHLASPEGKTLVFEQRKSDGVHTV HLASPEGKTLVFEQRKSDGVHTVETEVGDY K T L Q R K 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 891.48142 Q9Y3A6;M0R072;B1AKT3 Q9Y3A6 83 89 TMED5 Transmembrane emp24 domain-containing protein 5 yes no 2 0.0022148 108.24 By MS/MS 1 1.3876 1.3139 NaN 1 Median 1.3876 1.3139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8093900 3280600 4813400 8093900 3280600 4813400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33681 4413 35408 176806 178703 178703 1 TLVGSENPPLTVIR IQSLLRANKARDDYKTLVGSENPPLTVIRK KTLVGSENPPLTVIRKFVYLLDQSDLDFQE K T L I R K 0 1 1 0 0 0 1 1 0 1 2 0 0 0 2 1 2 0 0 2 0 0 14 0 1494.8406 E7EWC2;F5H7S7;Q13576;D6R939;E9PDT6 E7EWC2 722 735 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 5.0259E-05 92.866 By MS/MS 1 0.60513 0.5761 NaN 1 Median 0.60513 0.5761 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5353400 3262600 2090700 5353400 3262600 2090700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33682 901 35409 176807 178704 178704 1 TLVLLDNLNVR LLLPLLGAVCASGPRTLVLLDNLNVRETHS SGPRTLVLLDNLNVRETHSLFFRSLKDRGF R T L V R E 0 1 2 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 2 0 0 11 0 1268.7452 P39656;A0A0C4DGS1;U3KQ84 P39656 47 57 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2 5.8137E-05 108.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 5 2 1 1 2 1.2209 1.1052 21.91 13 Median 1.1363 1.1358 22.332 3 0 Median 1.198 1.02 22.32 4 0 Median 1.2819 1.3388 5.261 2 0 Median 1.6566 1.4443 NaN 1 0 Median 1.3319 1.4228 NaN 1 0 Median 1.2154 1.0192 3.2809 2 0 Median 241560000 104520000 137040000 25488000 11402000 14086000 176610000 76993000 99619000 27607000 11350000 16258000 1018000 374070 643910 3157800 1375900 1781900 7676900 3025400 4651500 33683 253 35410 176808;176809;176810;176811;176812;176813;176814;176815;176816;176817;176818;176819;176820;176821 178705;178706;178707;178708;178709;178710;178711;178712;178713;178714;178715;178716;178717;178718 178713 14 TLVLLMGK GGAPTFNVTVTKTDKTLVLLMGKEGVHGGL TVTKTDKTLVLLMGKEGVHGGLINKKCYEM K T L G K E 0 0 0 0 0 0 0 1 0 0 3 1 1 0 0 0 1 0 0 1 0 0 8 0 873.53576 P07737;K7EJ44;CON__P02584 P07737 109 116 PFN1 Profilin-1 yes no 1;2 0.0069954 86.866 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 4 3 2 1 2 1.1867 1.0422 12.926 18 Median 1.1731 1.0626 13.445 6 0 Median 1.2276 1.0294 3.1266 4 0 Median 1.2421 1.1804 5.2385 3 0 Median 1.2448 1.0034 0.30716 2 0 Median 1.0111 1.0687 NaN 1 0 Median 1.011 0.82743 5.5911 2 0 Median 654570000 295920000 358650000 326120000 148910000 177210000 249860000 111060000 138790000 53552000 24203000 29349000 13885000 5891400 7994000 498170 236530 261640 10652000 5610000 5041900 33684 1889 35411;35412 176822;176823;176824;176825;176826;176827;176828;176829;176830;176831;176832;176833;176834;176835;176836;176837;176838;176839 178719;178720;178721;178722;178723;178724;178725;178726;178727;178728;178729;178730;178731;178732;178733;178734;178735;178736;178737;178738;178739;178740;178741;178742;178743;178744;178745;178746;178747 178722 660 28 TLVLSNLSYSATEETLQEVFEK DYRGGKNSTWSGESKTLVLSNLSYSATEET SYSATEETLQEVFEKATFIKVPQNQNGKSK K T L E K A 1 0 1 0 0 1 4 0 0 0 4 1 0 1 0 3 3 0 1 2 0 0 22 0 2500.2585 P19338;H7BY16 P19338 487 508 NCL Nucleolin yes no 2;3 0.0068951 22.118 By MS/MS By matching By matching By MS/MS 1 3 1 2 1.1624 1.0513 13.383 7 Median 1.0069 1.0164 NaN 1 0 Median 1.1411 0.99806 10.354 3 0 Median 1.1624 1.1626 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2047 1.244 1.73 2 0 Median NaN NaN NaN 0 0 Median 8460200 3747500 4712700 1218000 561150 656890 1592400 705290 887120 407260 211560 195700 0 0 0 5242500 2269500 2973000 0 0 0 33685 2063 35413 176840;176841;176842;176843;176844;176845;176846 178748;178749;178750;178751;178752 178752 5 TLVNKEEPPKELPAAEPVLSPLEGTK LPSSIRTKALTNMSRTLVNKEEPPKELPAA LPAAEPVLSPLEGTKMTVNNLHPRVTEEDI R T L T K M 2 0 1 0 0 0 5 1 0 0 4 3 0 0 5 1 2 0 0 2 0 0 26 2 2785.5113 F6VRR5;Q9BY77 F6VRR5 273 298 POLDIP3 Polymerase delta-interacting protein 3 yes no 3 3.116E-05 33.193 By MS/MS By matching 1 1 0.44221 0.46955 7.8374 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37873 0.44424 NaN 1 0 Median 0.51633 0.49631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8322500 5670100 2652500 0 0 0 0 0 0 7262000 5007200 2254800 1060500 662850 397650 0 0 0 0 0 0 33686 1051 35414 176847;176848 178753 178753 1 TLVNPANVTFK LVPLMFGSLTVEKLKTLVNPANVTFKTYEG EKLKTLVNPANVTFKTYEGMMHSSCQQEMM K T L F K T 1 0 2 0 0 0 0 0 0 0 1 1 0 1 1 0 2 0 0 2 0 0 11 0 1202.6659 A0A087X1K9;E5RGR0;O75608;B4DP64 A0A087X1K9 127 137 LYPLA1 Acyl-protein thioesterase 1 yes no 2 0.00016921 79.974 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.79907 0.70861 4.0895 6 Median 0.73052 0.65978 1.5123 2 0 Median 0.85092 0.71183 1.5208 2 0 Median 0.75245 0.71355 NaN 1 0 Median 0.8648 0.71303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56468000 31427000 25041000 45405000 25674000 19731000 6407800 3413800 2994000 4118500 2089300 2029200 537280 250600 286670 0 0 0 0 0 0 33687 122 35415 176849;176850;176851;176852;176853;176854 178754;178755;178756;178757;178758;178759;178760;178761 178755 8 TLVPELIK DVHAVGISTLAAGHKTLVPELIKELNSLGR TLAAGHKTLVPELIKELNSLGRPDILVMCG K T L I K E 0 0 0 0 0 0 1 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 911.56917 P22033 P22033 680 687 MUT Methylmalonyl-CoA mutase, mitochondrial yes yes 2 0.018519 47.849 By MS/MS By matching By matching By matching 2 2 1 1 1.1105 1.0303 22.551 6 Median 0.97183 0.94683 6.5821 2 0 Median 1.2401 1.0922 29.053 2 0 Median 1.4933 1.5547 NaN 1 0 Median 1.2133 1.0702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31479000 15323000 16156000 7210700 3644900 3565800 23271000 11289000 11982000 670610 226750 443860 326440 162410 164030 0 0 0 0 0 0 33688 2095 35416 176855;176856;176857;176858;176859;176860 178762;178763 178762 2 TLVQILTEPR GRLPVVVPLHSLDEKTLVQILTEPRNAVIP SLDEKTLVQILTEPRNAVIPQYQALFSMDK K T L P R N 0 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 1 0 0 10 0 1168.6816 O76031 O76031 513 522 CLPX ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial yes yes 2 0.00048844 75.378 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.143 1.0201 44.517 4 Median 0.93239 0.91113 NaN 1 1 Median 1.0091 0.87323 NaN 1 0 Median 2.1696 2.2857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2948 1.142 NaN 1 0 Median 14838000 7314700 7522900 4406600 2333900 2072700 8468800 3999000 4469800 1726100 871380 854770 0 0 0 0 0 0 236130 110410 125720 33689 1718 35417 176861;176862;176863;176864;176865 178764;178765;178766 178766 3 TLVQQLYTTLCIEQHQLNK DLLSHENAATLNDVKTLVQQLYTTLCIEQH QLYTTLCIEQHQLNKERE____________ K T L N K E 0 0 1 0 1 4 1 0 1 1 4 1 0 0 0 0 3 0 1 1 0 0 19 0 2329.21 S4R468;Q8NE86 S4R468 146 164 MCU Calcium uniporter protein, mitochondrial yes no 3 0.023627 23.1 By MS/MS 1 1.565 1.3117 NaN 1 Median NaN NaN NaN 0 0 Median 1.565 1.3117 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4247800 1694000 2553800 0 0 0 4247800 1694000 2553800 0 0 0 0 0 0 0 0 0 0 0 0 33690 3428 35418 176866 178767 178767 1 TLVSAVPEESEMDPHVR PPDDIEVVYSPRDCRTLVSAVPEESEMDPH VSAVPEESEMDPHVRDCIRSYTEDWAIVIR R T L V R D 1 1 0 1 0 0 3 0 1 0 1 0 1 0 2 2 1 0 0 3 0 0 17 0 1894.9095 Q96N67;A0A1B0GUE9;A0A1B0GVW2 Q96N67 98 114 DOCK7 Dedicator of cytokinesis protein 7 yes no 3 0.0012504 31.233 By MS/MS 1 0.39717 0.37497 NaN 1 Median 0.39717 0.37497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6679500 5085400 1594200 6679500 5085400 1594200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33691 3707 35419 176867 178768 178768 1 TLVSMPPLPGLDLK GRGQSKYCYSGIRRKTLVSMPPLPGLDLKG KTLVSMPPLPGLDLKGSESPEMGPEVTPAP K T L L K G 0 0 0 1 0 0 0 1 0 0 4 1 1 0 3 1 1 0 0 1 0 0 14 0 1479.8371 P48382;F8W689;A0A0A0MSQ2;F6UE82;H0Y4B4 P48382 168 181 RFX5 DNA-binding protein RFX5 yes no 2 0.0074719 35.959 By MS/MS 1 0.59112 0.62753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59112 0.62753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390600 1505600 885050 0 0 0 0 0 0 2390600 1505600 885050 0 0 0 0 0 0 0 0 0 33692 2360 35420 176868 178769;178770 178769 2 TLVSTVGSMVFNEGEAQR PGPPDADGPLYLPYKTLVSTVGSMVFNEGE STVGSMVFNEGEAQRLIEILSEKAGIIQDT K T L Q R L 1 1 1 0 0 1 2 2 0 0 1 0 1 1 0 2 2 0 0 3 0 0 18 0 1923.936 Q9P2E9;A0A087WVV2 Q9P2E9 652 669 RRBP1 Ribosome-binding protein 1 yes no 2;3 1.2419E-05 51.013 By MS/MS By matching By matching 4 2 1 0.94128 0.79981 19.777 7 Median 0.96934 0.96767 11.565 4 0 Median 0.74589 0.65482 12.521 2 0 Median NaN NaN NaN 0 0 Median 0.94128 0.77454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10523000 5155400 5368100 8210400 4006400 4204000 2218900 1108900 1110000 0 0 0 94200 40103 54097 0 0 0 0 0 0 33693 4222 35421 176869;176870;176871;176872;176873;176874;176875 178771;178772 178771 2 TLVTLGKEDLSIK VELYEDRKEGYPAVKTLVTLGKEDLSIKIS VKTLVTLGKEDLSIKISDLGGGVPLRKIDR K T L I K I 0 0 0 1 0 0 1 1 0 1 3 2 0 0 0 1 2 0 0 1 0 0 13 1 1415.8235 Q15120 Q15120 272 284 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2;3 0.00028675 72.958 By matching By MS/MS 1 2 1.4755 1.395 37.979 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70436 0.7421 NaN 1 0 Median 1.4186 1.3474 22.655 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21237000 8869100 12368000 0 0 0 0 0 0 2563600 1534400 1029200 18673000 7334700 11338000 0 0 0 0 0 0 33694 2929 35422 176876;176877;176878 178773;178774 178774 2 TLVTQNSGVEALIHAILR TGTLSNLTCNNSKNKTLVTQNSGVEALIHA TQNSGVEALIHAILRAGDKDDITEPAVCAL K T L L R A 2 1 1 0 0 1 1 1 1 2 3 0 0 0 0 1 2 0 0 2 0 0 18 0 1934.0949 P14923 P14923 427 444 JUP Junction plakoglobin yes yes 2;3 6.3866E-14 117.23 By matching By MS/MS By MS/MS By MS/MS 1 2 1 3 0.77847 0.77348 34.173 7 Median 0.42446 0.43018 NaN 1 0 Median 1.0186 0.90133 21.634 2 0 Median 0.77847 0.80811 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66087 0.66456 34.333 3 0 Median NaN NaN NaN 0 0 Median 7571000 4470100 3100800 1619000 1105600 513420 2094300 1108000 986290 934710 523240 411470 0 0 0 2923000 1733300 1189700 0 0 0 33695 2013 35423 176879;176880;176881;176882;176883;176884;176885 178775;178776;178777;178778;178779 178779 5 TLVVHEKADDLGK DSVISLSGDHCIIGRTLVVHEKADDLGKGG GRTLVVHEKADDLGKGGNEESTKTGNAGSR R T L G K G 1 0 0 2 0 0 1 1 1 0 2 2 0 0 0 0 1 0 0 2 0 0 13 1 1423.7671 P00441;H7BYH4 P00441 117 129 SOD1 Superoxide dismutase [Cu-Zn] yes no 2;3 0.00023433 66.533 By MS/MS By MS/MS 2 3 0.86757 0.8533 67.021 4 Median 0.86757 0.8533 34.115 2 0 Median 0.6295 0.5619 102.79 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16151000 7981900 8168900 12913000 6358300 6554600 3237900 1623600 1614300 0 0 0 0 0 0 0 0 0 0 0 0 33696 1820 35424 176886;176887;176888;176889;176890 178780;178781;178782;178783;178784 178782 5 TLVWSEK ALVVGALESRQIGPRTLVWSEKEQVEKSAY ESRQIGPRTLVWSEKEQVEKSAYEFSETES R T L E K E 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 7 0 861.45962 P09960 P09960 219 225 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.037229 58.981 By MS/MS 1 1.2113 1.0157 NaN 1 Median NaN NaN NaN 0 0 Median 1.2113 1.0157 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9286300 4007300 5279000 0 0 0 9286300 4007300 5279000 0 0 0 0 0 0 0 0 0 0 0 0 33697 1924 35425 176891 178785 178785 1 TLVWSEKEQVEK ALVVGALESRQIGPRTLVWSEKEQVEKSAY GPRTLVWSEKEQVEKSAYEFSETESMLKIA R T L E K S 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 1 1 1 0 2 0 0 12 1 1474.7668 P09960 P09960 219 230 LTA4H Leukotriene A-4 hydrolase yes yes 2;3 1.4755E-05 148.32 By MS/MS By MS/MS By matching By matching 4 3 1 1 1.0321 1.0444 17.152 9 Median 1.0203 0.99237 14.79 4 0 Median 1.1222 1.0484 27.554 3 0 Median 0.74017 0.88695 NaN 1 0 Median 1.0976 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90734000 46272000 44461000 53920000 27510000 26410000 14803000 6723700 8079500 19815000 11164000 8651400 2195100 874830 1320200 0 0 0 0 0 0 33698 1924 35426 176892;176893;176894;176895;176896;176897;176898;176899;176900 178786;178787;178788;178789;178790;178791 178787 6 TLWNGQK EGGDFNEFPVPEQFKTLWNGQKLVTTVTEI FPVPEQFKTLWNGQKLVTTVTEIAG_____ K T L Q K L 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 7 0 845.43955 Q01518 Q01518 459 465 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.016156 69.432 By MS/MS By MS/MS 1 2 1.1259 0.96 20.361 3 Median 1.3951 1.3536 NaN 1 0 Median 1.1135 0.95164 1.2364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7771100 3332000 4439200 1857900 740590 1117300 5913300 2591400 3321900 0 0 0 0 0 0 0 0 0 0 0 0 33699 2686 35427 176901;176902;176903 178792;178793;178794 178793 3 TLYEALER RSWETLKNVISEKQRTLYEALERQQKYQDS VISEKQRTLYEALERQQKYQDSLQSISTKM R T L E R Q 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 993.51311 A0A0C4DG40;Q8NF91;E7ENN3;F5GZ83;F5H6R8 A0A0C4DG40 5886 5893 SYNE1 Nesprin-1 yes no 2 0.0051787 77.282 By MS/MS 1 0.90972 0.99284 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90972 0.99284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3430100 1721500 1708600 0 0 0 0 0 0 3430100 1721500 1708600 0 0 0 0 0 0 0 0 0 33700 233 35428 176904 178795 178795 1 TLYFLPR ETHVSCCVMVKNIERTLYFLPREMKIDLNT VMVKNIERTLYFLPREMKIDLNTGKETGTP R T L P R E 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 1 0 0 0 7 0 908.51199 A0A087WU64;A6NMQ1;P09884 A0A087WU64 386 392 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.017598 65.263 By MS/MS By matching By matching 1 1 1 1.1385 0.98909 8.1995 3 Median 0.92869 0.88322 NaN 1 0 Median 1.1711 1.0358 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1385 0.98909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6406400 3265600 3140700 5462900 2848200 2614700 766000 346720 419270 0 0 0 177460 70684 106780 0 0 0 0 0 0 33701 26 35429 176905;176906;176907 178796;178797 178796 2 TLYGFGG VTAMDVVYALKRQGRTLYGFGG________ YALKRQGRTLYGFGG_______________ R T L G G - 0 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 713.33844 P62805 P62805 97 103 HIST1H4A Histone H4 yes yes 1 0.0063878 100.36 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65847000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 65847000 0 0 0 0 0 33702 2597 35430 176908 178798 178798 1 TLYISDSDKR MQQLNLEGKNYCTAKTLYISDSDKRKHFML YCTAKTLYISDSDKRKHFMLSVKMFYGNSD K T L K R K 0 1 0 2 0 0 0 0 0 1 1 1 0 0 0 2 1 0 1 0 0 0 10 1 1196.6037 Q06330;D6R927;D6RB37;D6RBQ8;D6R946;D6RA45;D6RCM1 Q06330 127 136 RBPJ Recombining binding protein suppressor of hairless yes no 2;3 0.0043952 57.96 By MS/MS By MS/MS By matching 2 2 1 1.2644 1.3976 26.146 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2857 1.4237 2.6176 2 1 Median 1.6219 1.522 35.212 2 1 Median 0.92945 0.96265 NaN 1 0 Median NaN NaN NaN 0 0 Median 4178500 1497100 2681300 0 0 0 0 0 0 1704100 600210 1103900 1575600 504450 1071100 898860 392490 506380 0 0 0 33703 2725 35431 176909;176910;176911;176912;176913 178799;178800;178801;178802;178803;178804 178799 6 TLYLTLK QVGRVYPQAVYFPIRTLYLTLKIEQRERYK QAVYFPIRTLYLTLKIEQRERYKSDSGQQQ R T L L K I 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 2 0 1 0 0 0 7 0 850.51641 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3242 3248 TRRAP Transformation/transcription domain-associated protein yes no 2 0.015644 70.912 By MS/MS By MS/MS 1 1 1.0989 1.0909 5.7732 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97903 1.0473 NaN 1 0 Median 1.2335 1.1364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10014000 5227400 4787000 0 0 0 0 0 0 9581500 5026200 4555300 432910 201230 231670 0 0 0 0 0 0 33704 991 35432 176914;176915 178805;178806;178807 178806 3 TLYMSHR AARQLLDDEEQLTAKTLYMSHRELPAWVSF DEEQLTAKTLYMSHRELPAWVSFPDVEKAE K T L H R E 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 7 0 906.43817 Q9BSJ8 Q9BSJ8 119 125 ESYT1 Extended synaptotagmin-1 yes yes 2 0.0067587 91.906 By MS/MS 1 1.4127 1.1946 NaN 1 Median NaN NaN NaN 0 0 Median 1.4127 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4491000 1872500 2618500 0 0 0 4491000 1872500 2618500 0 0 0 0 0 0 0 0 0 0 0 0 33705 3816 35433 176916 178808;178809 178808 2 TLYNNQPIDFLKK LYTVEYLSNMVGGRKTLYNNQPIDFLKKMV RKTLYNNQPIDFLKKMVAASIKDGE_____ K T L K K M 0 0 2 1 0 1 0 0 0 1 2 2 0 1 1 0 1 0 1 0 0 0 13 1 1592.8562 K7ES02;Q13867;K7ESE8;J3KSD8 K7ES02 296 308 BLMH Bleomycin hydrolase yes no 2;3 0.00795 34.532 By MS/MS By matching By matching By matching 4 2 1 1 0.87636 0.84847 28.616 8 Median 0.85213 0.88069 41.507 4 0 Median 0.81961 0.77385 11.444 2 0 Median 0.88197 0.93088 NaN 1 0 Median 0.90329 0.85797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27692000 14802000 12890000 24996000 13310000 11687000 673910 398810 275100 1799300 988680 810580 222180 104550 117620 0 0 0 0 0 0 33706 1400 35434 176917;176918;176919;176920;176921;176922;176923;176924 178810;178811;178812;178813 178811 4 TLYSFFSPSPAR ______________________________ GQKTLYSFFSPSPARKRHAPSPEPAVQGTG K T L A R K 1 1 0 0 0 0 0 0 0 0 1 0 0 2 2 3 1 0 1 0 0 0 12 0 1371.6823 P13051 P13051 6 17 UNG Uracil-DNA glycosylase yes yes 2 0.00063696 63.283 By MS/MS By MS/MS By MS/MS 1 1 2 0.76545 0.70162 26.953 4 Median 0.78363 0.78178 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1026 1.0908 NaN 1 1 Median 0.72688 0.6177 2.7185 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11732000 6007100 5724600 3128400 1773600 1354800 0 0 0 4320200 1764300 2555900 4283200 2469200 1814000 0 0 0 0 0 0 33707 1987 35435 176925;176926;176927;176928 178814;178815;178816;178817 178817 4 TLYTQIR KDNLLLDMYLAPHVRTLYTQIRNRALIQYF MYLAPHVRTLYTQIRNRALIQYFSPYVSAD R T L I R N 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 7 0 893.49707 C9JFE4;Q13098;A0A096LP07;A0A096LPJ3;A8K070 C9JFE4 344 350 GPS1 COP9 signalosome complex subunit 1 yes no 2 0.0096554 83.614 By MS/MS By MS/MS By matching 1 1 1 1.1937 1.1366 21.432 3 Median 1.1464 1.1366 NaN 1 0 Median 1.1937 1.006 NaN 1 0 Median 1.4504 1.5264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13706000 6151500 7554600 3998700 1918100 2080600 7737600 3390600 4347000 1969800 842750 1127000 0 0 0 0 0 0 0 0 0 33708 695 35436 176929;176930;176931 178818;178819 178819 2 TLYVEEVVPNVIEPSFGLGR FQLTKDMINVKRFQKTLYVEEVVPNVIEPS EVVPNVIEPSFGLGRIMYTVFEHTFHVREG K T L G R I 0 1 1 0 0 0 3 2 0 1 2 0 0 1 2 1 1 0 1 4 0 0 20 0 2217.1681 P41250 P41250 564 583 GARS Glycine--tRNA ligase yes yes 2;3 2.8797E-08 72.496 By MS/MS By MS/MS 2 3 0.81128 0.75359 12.745 5 Median 0.77914 0.76312 5.3749 2 0 Median 0.85996 0.75359 16.81 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7641400 4049400 3592000 5171500 2761900 2409600 2469900 1287500 1182400 0 0 0 0 0 0 0 0 0 0 0 0 33709 2301 35437 176932;176933;176934;176935;176936 178820;178821;178822;178823;178824 178824 5 TLYVGNLSR ______________________________ DDGQPRTLYVGNLSRDVTEVLILQLFSQIG R T L S R D 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 1 0 0 9 0 1021.5556 Q01085;E7ETC0;E5RG67;C9JTN7;F8W8I6;P31483;E5RGV5 Q01085 10 18 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 2 0.00070224 103.56 By matching By matching By MS/MS By matching By MS/MS By matching 3 1 1 2 1 1 1.1787 1.1317 15.96 9 Median 1.1787 1.1317 3.5911 3 0 Median 1.3582 1.1389 NaN 1 0 Median 1.107 1.2162 NaN 1 0 Median 1.1613 0.91575 18.739 2 0 Median 1.2072 1.2277 NaN 1 0 Median 1.0112 0.81419 NaN 1 0 Median 99524000 47501000 52022000 30387000 14652000 15735000 1735200 689770 1045400 59017000 27980000 31037000 2049200 946730 1102500 1398800 623900 774910 4936400 2608600 2327800 33710 2682;724;1086 35438 176937;176938;176939;176940;176941;176942;176943;176944;176945 178825;178826;178827 178826 3 TMAAEVLSR QPYGTRNAVLNTEARTMAAEVLSRRCVLMR LNTEARTMAAEVLSRRCVLMRLLDFSYEQY R T M S R R 2 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 9 0 976.50117 Q969V3 Q969V3 74 82 NCLN Nicalin yes yes 2 0.00091763 90.709 By MS/MS By matching 1 1 1.2351 1.1146 12.055 2 Median 1.2546 1.2138 NaN 1 0 Median 1.2159 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17089000 7506500 9582100 7553200 3298300 4254900 9535400 4208200 5327200 0 0 0 0 0 0 0 0 0 0 0 0 33711 3589 35439 176946;176947 178828;178829 178828 2 TMALPVGR FIEEKENRLLQLCQRTMALPVGRGMFTLFS LLQLCQRTMALPVGRGMFTLFSYHPVPTEP R T M G R G 1 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 1 0 0 1 0 0 8 0 843.46366 Q9H1A4;H0Y564 Q9H1A4 1077 1084 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.010382 58.981 By MS/MS By MS/MS By matching 1 1 1 0.89917 0.99441 84.996 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89917 0.99441 NaN 1 0 Median 0.79739 0.70245 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.3325 3.5313 NaN 1 0 Median 5159700 2678000 2481700 0 0 0 0 0 0 3973100 2240700 1732400 728190 382090 346100 0 0 0 458440 55183 403260 33712 3933 35440 176948;176949;176950 178830;178831 178830 2 TMAQHEELMK DSLNAEREKVQVTAKTMAQHEELMKKTETM QVTAKTMAQHEELMKKTETMNVVMETNKML K T M M K K 1 0 0 0 0 1 2 0 1 0 1 1 2 0 0 0 1 0 0 0 0 0 10 0 1216.558 P12270 P12270 1255 1264 TPR Nucleoprotein TPR yes yes 2;3 0.0049683 41.029 By matching By MS/MS By MS/MS By MS/MS 2 4 4 3 1.0781 1.1633 16.754 13 Median 1.2889 1.2609 5.3279 2 0 Median 1.2038 1.0524 13.419 4 0 Median 0.95935 1.0594 13.793 4 0 Median 1.3866 1.2553 27.641 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14417000 6357100 8059500 1221300 526980 694370 6827600 2925100 3902500 5056100 2318800 2737300 1311600 586280 725300 0 0 0 0 0 0 33713 1978 35441 176951;176952;176953;176954;176955;176956;176957;176958;176959;176960;176961;176962;176963 178832;178833;178834;178835;178836;178837;178838;178839;178840 178838 9 TMASQVSIR LSKEGLIERTERMKKTMASQVSIRRIKDYD TERMKKTMASQVSIRRIKDYDANFKIKDFP K T M I R R 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 2 1 0 0 1 0 0 9 0 991.51206 A0A0G2JMS5;A0A087WU62;A0A087X2D5;Q9BRJ2 A0A0G2JMS5 115 123 MRPL45 39S ribosomal protein L45, mitochondrial yes no 2 0.002854 84.568 By MS/MS By MS/MS 1 1 1.9637 1.7364 39.406 2 Median 2.449 2.2944 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5745 1.3141 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8295900 2464200 5831700 6503300 1726800 4776500 0 0 0 0 0 0 1792600 737350 1055200 0 0 0 0 0 0 33714 25 35442 176964;176965 178841;178842 178841 2 TMATMGDTLASR MVLSNLNNNMDVESRTMATMGDTLASRGLL ESRTMATMGDTLASRGLLDAAHFCYLMAQA R T M S R G 2 1 0 1 0 0 0 1 0 0 1 0 2 0 0 1 3 0 0 0 0 0 12 0 1253.5744 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09 O15027 1722 1733 SEC16A Protein transport protein Sec16A yes no 2 0.0001209 90.05 By MS/MS By matching By matching 1 1 1 1.7217 1.4153 52.413 3 Median 0.72976 0.68493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8053 1.8955 NaN 1 0 Median 1.7217 1.4153 NaN 1 0 Median 18277000 9348400 8928900 13786000 8105900 5680400 0 0 0 0 0 0 0 0 0 3888600 1021300 2867200 602380 221160 381220 33715 1513 35443 176966;176967;176968 178843;178844 178843 2 TMAVLQIEAEKAELR IARNFYDSPEKIYERTMAVLQIEAEKAELR TMAVLQIEAEKAELRVKELEVRKLMHVRGD R T M L R V 3 1 0 0 0 1 3 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 15 1 1700.9131 H0Y886;O43674;E7EWP0 H0Y886 153 167 NDUFB5 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial yes no 3 0.00039762 41.542 By matching By matching By MS/MS 1 1 1 0.93545 0.97348 22.679 3 Median 0.86273 0.85568 NaN 1 0 Median 1.5082 1.3301 NaN 1 0 Median 0.93545 0.97348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8877300 4469200 4408100 3196400 1662700 1533700 623060 217720 405350 5057800 2588800 2469000 0 0 0 0 0 0 0 0 0 33716 1159 35444 176969;176970;176971 178845 178845 1 TMDEDIVIQQDDEIR SEMEFDPNSNPPCYKTMDEDIVIQQDDEIR TMDEDIVIQQDDEIRLKIVGTRVDKNDIFA K T M I R L 0 1 0 4 0 2 2 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 15 0 1818.8306 P62487 P62487 130 144 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes yes 2 4.0126E-10 115.18 By MS/MS By matching By MS/MS By matching 2 1 2 1 1.1818 1.0731 28.965 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2632 1.2421 30.141 2 0 Median 1.3414 1.1334 NaN 1 0 Median 0.87295 0.9234 13.519 2 1 Median 2.3098 1.8104 NaN 1 0 Median 286050000 135130000 150920000 0 0 0 0 0 0 272070000 128810000 143260000 8664800 3626700 5038200 4031100 2252700 1778400 1292300 439430 852830 33717 2590 35445;35446 176972;176973;176974;176975;176976;176977 178846;178847;178848;178849 178848 1256 4 TMDKSELVQK ______________________________ ______________________________ M T M Q K A 0 0 0 1 0 1 1 0 0 0 1 2 1 0 0 1 1 0 0 1 0 0 10 1 1177.6013 P31946;Q4VY20;Q4VY19;A0A0J9YWE8 P31946 2 11 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 2 0.0001564 105.52 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1986 1.2169 17.649 5 Median 1.0621 1.0565 19.995 2 0 Median 1.4447 1.32 NaN 1 0 Median 1.1701 1.1663 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3915 1.4741 NaN 1 0 Median NaN NaN NaN 0 0 Median 44464000 20022000 24442000 28052000 13213000 14839000 5984300 2390000 3594400 8481600 3630400 4851200 0 0 0 1946400 789180 1157300 0 0 0 33718 2210 35447 176978;176979;176980;176981;176982 178850;178851;178852;178853;178854 178854 5 TMDLPFLEASTLR QFAQLYRSLMYSAQKTMDLPFLEASTLRAG QKTMDLPFLEASTLRAGERPELCRVSLPEF K T M L R A 1 1 0 1 0 0 1 0 0 0 3 0 1 1 1 1 2 0 0 0 0 0 13 0 1492.7596 P19174 P19174 227 239 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes yes 2 0.0014995 52.79 By MS/MS By matching By matching 3 1 1 0.85485 0.85128 16.631 5 Median 0.85485 0.85128 11.229 3 0 Median 1.0444 0.91882 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73238 0.64312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5632100 2805200 2826900 5085500 2530200 2555200 441420 217940 223480 0 0 0 105200 57021 48183 0 0 0 0 0 0 33719 2062 35448 176983;176984;176985;176986;176987 178855;178856;178857;178858;178859 178856 5 TMDNMTSSAQIIQR NSSPTSTSPSSRYERTMDNMTSSAQIIQRS RTMDNMTSSAQIIQRSFSSPENFQRQAVIT R T M Q R S 1 1 1 1 0 2 0 0 0 2 0 0 2 0 0 2 2 0 0 0 0 0 14 0 1594.7443 I3L521;F5GXV8;F5GY08;J3KPD3;Q9Y580 I3L521 118 131 RBM7 RNA-binding protein 7 yes no 2 7.6282E-08 100.55 By MS/MS By matching 1 1 0.95803 0.97099 31.301 2 Median 0.83325 0.7782 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1015 1.2115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14160000 7112600 7047800 8332500 4313600 4018900 0 0 0 5827800 2798900 3028900 0 0 0 0 0 0 0 0 0 33720 1007 35449 176988;176989 178860 178860 1 TMELNVGNEASFHGQER GNACKVTESNLEKAKTMELNVGNEASFHGQ ELNVGNEASFHGQERTKTGISEEAAIEENK K T M E R T 1 1 2 0 0 1 3 2 1 0 1 0 1 1 0 1 1 0 0 1 0 0 17 0 1917.8639 Q5UIP0;H7C2B5 Q5UIP0 1916 1932 RIF1 Telomere-associated protein RIF1 yes no 3 9.9757E-08 91.355 By MS/MS By MS/MS 3 5 1.013 1.0158 17.152 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96051 1.0139 9.4835 3 0 Median 1.16 1.0178 20.452 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40630000 19132000 21498000 0 0 0 0 0 0 33706000 16111000 17595000 6923300 3020400 3902900 0 0 0 0 0 0 33721 3109 35450;35451 176990;176991;176992;176993;176994;176995;176996;176997 178861;178862;178863;178864;178865;178866;178867;178868 178863 1665 8 TMFLPLAER LIMQSISAQDENLSKTMFLPLAERMVEKMV DENLSKTMFLPLAERMVEKMVKEDKIEAEA K T M E R M 1 1 0 0 0 0 1 0 0 0 2 0 1 1 1 0 1 0 0 0 0 0 9 0 1076.5689 Q14CX7;H0YHR9 Q14CX7 171 179 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes no 2 0.034001 42.109 By MS/MS By MS/MS By matching 1 1 1 1.1382 1.1837 10.926 3 Median 1.2193 1.1897 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1068 1.1837 NaN 1 0 Median 1.1382 0.98218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5698500 2542500 3156000 2926100 1342200 1583900 0 0 0 2307800 980030 1327800 464500 220260 244250 0 0 0 0 0 0 33722 2908 35452 176998;176999;177000 178869;178870 178870 2 TMGVMFTPLTVK SIKAYVSTLMGVPGRTMGVMFTPLTVKYAY PGRTMGVMFTPLTVKYAYYDTERIGVDLIM R T M V K Y 0 0 0 0 0 0 0 1 0 0 1 1 2 1 1 0 3 0 0 2 0 0 12 0 1323.6931 O00303 O00303 227 238 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.00067049 62.303 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1 1.0469 0.94369 27.793 6 Median 0.78547 0.75016 33.049 2 0 Median 1.0741 0.91319 NaN 1 0 Median 0.95455 0.93976 NaN 1 0 Median 1.1127 0.9923 NaN 1 0 Median 1.4796 1.4222 NaN 1 0 Median NaN NaN NaN 0 0 Median 25103000 12467000 12636000 11905000 5887700 6017300 6015600 2819900 3195700 5340100 2974700 2365400 383020 191390 191630 1459400 593660 865770 0 0 0 33723 1457 35453 177001;177002;177003;177004;177005;177006 178871;178872;178873;178874;178875;178876;178877 178871 7 TMGYSVTAPEDTR TMPGGNDHEIFTDPRTMGYSVTAPEDTRRI PRTMGYSVTAPEDTRRICELLFS_______ R T M T R R 1 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 3 0 1 1 0 0 13 0 1426.6398 H3BV55;O15305;H3BRM0 H3BV55 199 211 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 2 0.00077673 65.5 By MS/MS By MS/MS 1 1 0.56083 0.50301 39.535 2 Median 0.40146 0.38033 NaN 1 1 Median 0.78348 0.66525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10617000 7781700 2835500 8670700 6717500 1953200 1946600 1064200 882380 0 0 0 0 0 0 0 0 0 0 0 0 33724 1240 35454 177007;177008 178878;178879 178879 2 TMGYSVTAPEDTRR TMPGGNDHEIFTDPRTMGYSVTAPEDTRRI RTMGYSVTAPEDTRRICELLFS________ R T M R R I 1 2 0 1 0 0 1 1 0 0 0 0 1 0 1 1 3 0 1 1 0 0 14 1 1582.741 H3BV55;O15305;H3BRM0 H3BV55 199 212 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 3 0.00020196 58.32 By MS/MS 1 1.0932 1.1686 NaN 1 Median 1.0932 1.1686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6815300 2767400 4047900 6815300 2767400 4047900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33725 1240 35455 177009 178880 178880 1 TMIISPER PKIADREDEYKKHRRTMIISPERLDPFADG EYKKHRRTMIISPERLDPFADGGKTPDPKM R T M E R L 0 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 1 0 0 0 0 0 8 0 945.49535 O75533;B4DGZ4;A0A494C1M2 O75533 125 132 SF3B1 Splicing factor 3B subunit 1 yes no 2 0.0037226 97.798 By MS/MS By MS/MS By MS/MS 1 2 1 1.1495 0.97942 4.1277 3 Median NaN NaN NaN 0 0 Median 1.1793 0.98695 NaN 1 1 Median 0.83236 0.91562 NaN 1 1 Median 1.1495 0.97942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15979000 7369100 8609500 0 0 0 9773400 4158200 5615200 4679300 2457300 2222000 1526000 753590 772370 0 0 0 0 0 0 33726 1683 35456 177010;177011;177012;177013 178881;178882;178883;178884 178881 4 TMIQSPSGVILQEAADVHAR YTSGLETLLNIPIKRTMIQSPSGVILQEAA PSGVILQEAADVHARYIELLTRSGDYYRFL R T M A R Y 3 1 0 1 0 2 1 1 1 2 1 0 1 0 1 2 1 0 0 2 0 0 20 0 2122.0841 P15924 P15924 983 1002 DSP Desmoplakin yes yes 3 3.0195E-11 90.654 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 1 1 1 1 1 0.6755 0.62038 16.936 9 Median 0.56081 0.5623 6.9127 4 1 Median 0.72853 0.61813 NaN 1 0 Median 0.6755 0.74114 NaN 1 0 Median 0.75467 0.65568 NaN 1 0 Median 0.72895 0.76331 NaN 1 0 Median 1.076 0.88472 NaN 1 0 Median 52235000 30883000 21352000 39188000 23280000 15908000 908720 526370 382350 6932200 4214900 2717400 178090 103170 74920 4540000 2554300 1985600 488350 204560 283790 33727 2021 35457;35458 177014;177015;177016;177017;177018;177019;177020;177021;177022 178885;178886;178887;178888;178889;178890;178891;178892 178892 807 8 TMLAVVDYMR SEHFFRCCLDKKSQRTMLAVVDYMRRQKRP KKSQRTMLAVVDYMRRQKRPSSGTIFNDAF R T M M R R 1 1 0 1 0 0 0 0 0 0 1 0 2 0 0 0 1 0 1 2 0 0 10 0 1197.5886 Q13315 Q13315 1908 1917 ATM Serine-protein kinase ATM yes yes 2 0.0061875 49.418 By MS/MS 1 0.81077 0.90992 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81077 0.90992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1515500 906600 608910 0 0 0 0 0 0 1515500 906600 608910 0 0 0 0 0 0 0 0 0 33728 2805 35459 177023 178893 178893 1 TMLELINQLDGFDPR ARFDDGAGGDNEVQRTMLELINQLDGFDPR TMLELINQLDGFDPRGNIKVLMATNRPDTL R T M P R G 0 1 1 2 0 1 1 1 0 1 3 0 1 1 1 0 1 0 0 0 0 0 15 0 1760.8767 P35998 P35998 298 312 PSMC2 26S protease regulatory subunit 7 yes yes 2 1.6538E-07 134.2 By matching By MS/MS By MS/MS 1 2 1 1.0034 0.92227 12.139 4 Median 0.81691 0.79606 NaN 1 0 Median 1.0866 0.92227 12.121 2 1 Median 1.0048 1.0119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10290000 4975100 5314900 302490 137820 164670 8068300 3884100 4184100 1919200 953130 966060 0 0 0 0 0 0 0 0 0 33729 2253 35460 177024;177025;177026;177027 178894;178895;178896;178897 178896 4 TMLELLNQLDGFDSR KRYDSNSGGEREIQRTMLELLNQLDGFDSR TMLELLNQLDGFDSRGDVKVIMATNRIETL R T M S R G 0 1 1 2 0 1 1 1 0 0 4 0 1 1 0 1 1 0 0 0 0 0 15 0 1750.856 P62191 P62191 308 322 PSMC1 26S protease regulatory subunit 4 yes yes 2 9.9989E-05 80.596 By MS/MS 1 1.1804 1.0211 NaN 1 Median NaN NaN NaN 0 0 Median 1.1804 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 910150 405720 504430 0 0 0 910150 405720 504430 0 0 0 0 0 0 0 0 0 0 0 0 33730 2571 35461 177028 178898 178898 1 TMLELLNQLDGFEATK SRLEGGSGGDSEVQRTMLELLNQLDGFEAT MLELLNQLDGFEATKNIKVIMATNRIDILD R T M T K N 1 0 1 1 0 1 2 1 0 0 4 1 1 1 0 0 2 0 0 0 0 0 16 0 1821.9183 P62195 P62195 272 287 PSMC5 26S protease regulatory subunit 8 yes yes 2 3.5151E-59 234.92 By matching By MS/MS By MS/MS 1 2 1 1.1697 1.0745 22.761 4 Median 1.6187 1.5747 NaN 1 0 Median 1.1418 0.97315 2.6772 2 0 Median 1.176 1.1641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23095000 10395000 12701000 271680 90476 181200 19417000 8771700 10646000 3406600 1532400 1874200 0 0 0 0 0 0 0 0 0 33731 2572 35462 177029;177030;177031;177032 178899;178900;178901;178902;178903 178901 5 TMLELLNQLDGFQPNTQVK KRFDSEKAGDREVQRTMLELLNQLDGFQPN LLNQLDGFQPNTQVKVIAATNRVDILDPAL R T M V K V 0 0 2 1 0 3 1 1 0 0 4 1 1 1 1 0 2 0 0 1 0 0 19 0 2188.1198 R4GNH3;P17980;E9PM69;E9PKD5 R4GNH3 293 311 PSMC3 26S protease regulatory subunit 6A yes no 2;3 2.5193E-07 62.258 By MS/MS By MS/MS By matching By matching 3 2 2 2 1.0746 1.0204 11.945 9 Median NaN NaN NaN 0 0 Median 0.94514 0.8063 14.174 3 0 Median 1.0313 1.0244 0.55969 2 0 Median 1.1054 0.98355 3.984 2 0 Median 1.1349 1.0974 3.803 2 0 Median NaN NaN NaN 0 0 Median 15335000 7401200 7934000 0 0 0 8340400 3990500 4350000 5757000 2834200 2922800 169940 83066 86871 1067800 493430 574370 0 0 0 33732 2050 35463 177033;177034;177035;177036;177037;177038;177039;177040;177041 178904;178905;178906;178907;178908;178909;178910 178907 7 TMLESAGGLIQTAR PEGRAAMEPIVISAKTMLESAGGLIQTARA KTMLESAGGLIQTARALAVNPRDPPSWSVL K T M A R A 2 1 0 0 0 1 1 2 0 1 2 0 1 0 0 1 2 0 0 0 0 0 14 0 1446.7501 Q9Y490 Q9Y490 1605 1618 TLN1 Talin-1 yes yes 2;3 4.8806E-26 185.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 4 1 1.1964 1.0764 38.337 11 Median 1.0626 1.0004 18.238 4 3 Median 1.0709 0.89299 2.6867 2 0 Median 1.3739 1.4975 NaN 1 0 Median 1.2992 1.1416 NaN 1 0 Median 1.9625 1.9851 72.242 2 1 Median 1.2306 1.032 NaN 1 0 Median 128110000 57537000 70568000 78106000 37239000 40867000 15659000 7538900 8119800 16805000 7442800 9362500 1366800 564150 802670 15410000 4396300 11014000 758480 356320 402160 33733 4441 35464;35465 177042;177043;177044;177045;177046;177047;177048;177049;177050;177051;177052;177053;177054 178911;178912;178913;178914;178915;178916;178917;178918;178919;178920;178921;178922;178923;178924;178925 178916 1988 15 TMLESLIADK RRAVGPSSTQLYMVRTMLESLIADKSGSKK LYMVRTMLESLIADKSGSKKTLRSSLEGPT R T M D K S 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 1 1 0 0 0 0 0 10 0 1119.5846 E7EVJ5;H7C229;E7EW33;Q96F07;A0A087WZL7;Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 564 573 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.0079033 47.198 By matching By MS/MS By matching 1 1 2 1.1875 1.066 9.6312 4 Median NaN NaN NaN 0 0 Median 1.1719 1.0311 NaN 1 0 Median 1.162 1.2486 NaN 1 0 Median 1.2092 1.0536 6.3529 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9898300 4376800 5521400 0 0 0 1883200 861700 1021500 7117600 3130600 3987000 897440 384520 512920 0 0 0 0 0 0 33734 3224;897 35466 177055;177056;177057;177058 178926;178927 178927 2 TMLINHALK ESNSVLIIGPRGSGKTMLINHALKELMEIE PRGSGKTMLINHALKELMEIEEVSENVLQV K T M L K E 1 0 1 0 0 0 0 0 1 1 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1039.5848 O43929;C9JGH7;C9J2X8;Q53SE3 O43929 74 82 ORC4;ORC4L Origin recognition complex subunit 4 no no 2 0.0057342 56.721 By MS/MS By MS/MS 1 1 1.2234 1.1484 7.6276 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1061 1.0881 NaN 1 0 Median 1.3531 1.2121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10460000 4716400 5743300 0 0 0 0 0 0 5486400 2370600 3115900 4973300 2345900 2627400 0 0 0 0 0 0 + 33735 1602 35467 177059;177060 178928;178929;178930 178928 3 TMLITHMQDLQEVTQDLHYENFR VEVENPEHNDFLKLRTMLITHMQDLQEVTQ DLQEVTQDLHYENFRSERLKRGGRKVENED R T M F R S 0 1 1 2 0 3 2 0 2 1 3 0 2 1 0 0 3 0 1 1 0 0 23 0 2861.3476 Q15019;B5MCX3 Q15019 278 300 SEPT2 Septin-2 yes no 3;4 3.9347E-38 158.73 By MS/MS By MS/MS By matching By matching 2 9 5 2 1.0093 1.0548 11.836 18 Median NaN NaN NaN 0 0 Median 1.1535 1.0045 11.079 2 0 Median 0.95576 1.0501 7.9054 9 0 Median 1.298 1.1204 9.4902 5 0 Median NaN NaN NaN 0 0 Median 0.98395 0.82036 4.039 2 0 Median 369890000 175460000 194430000 0 0 0 23423000 10496000 12928000 335660000 160260000 175400000 7782400 3100500 4681900 0 0 0 3024400 1606300 1418100 33736 2914 35468;35469;35470 177061;177062;177063;177064;177065;177066;177067;177068;177069;177070;177071;177072;177073;177074;177075;177076;177077;177078 178931;178932;178933;178934;178935;178936;178937;178938;178939;178940;178941;178942;178943;178944;178945;178946;178947;178948;178949;178950;178951;178952 178948 1599;1600 22 TMLLLSR GFTEVTPVTGASLRRTMLLLSRSPEAQPKT VTGASLRRTMLLLSRSPEAQPKTLPLTGST R T M S R S 0 1 0 0 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 0 0 0 7 0 832.48406 P55265 P55265 818 824 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0038136 102.71 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.1173 1.169 7.9596 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0952 1.1723 NaN 1 0 Median 1.4054 1.2262 NaN 1 0 Median 1.0914 1.1269 5.1788 2 0 Median 1.2187 1.0012 NaN 1 0 Median 20694000 9877000 10817000 0 0 0 0 0 0 4108500 2062800 2045800 303160 150030 153130 15598000 7364100 8234300 684160 300140 384020 33737 2498 35471 177079;177080;177081;177082;177083 178953;178954;178955;178956;178957;178958 178958 6 TMLPGEHQQVLSNLQSR NEIDRIRASNVASIKTMLPGEHQQVLSNLQ LPGEHQQVLSNLQSRFEDFLEDSQESQVFS K T M S R F 0 1 1 0 0 3 1 1 1 0 3 0 1 0 1 2 1 0 0 1 0 0 17 0 1936.9789 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 999 1015 DST Dystonin yes no 3 0.0040899 44.391 By MS/MS 2 0.81012 0.85477 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81012 0.85477 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11052000 6291300 4761000 0 0 0 0 0 0 11052000 6291300 4761000 0 0 0 0 0 0 0 0 0 33738 934 35472 177084;177085 178959;178960 178960 2 TMLTELLR VTTISMARCTLTLLKTMLTELLRGGSFEFK CTLTLLKTMLTELLRGGSFEFKDMRVPSAL K T M L R G 0 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 8 0 975.5423 Q69YN4;H0YBN5 Q69YN4 1015 1022 KIAA1429 Protein virilizer homolog yes no 2 0.071363 30.185 By MS/MS By matching 1 1 1.0498 1.1225 16.726 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8974 0.99734 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2282 1.2635 NaN 1 0 Median NaN NaN NaN 0 0 Median 3412700 1711600 1701100 0 0 0 0 0 0 2658600 1444300 1214400 0 0 0 754110 267370 486740 0 0 0 33739 3130 35473 177086;177087 178961 178961 1 TMLYTPQEMK HGIPLDLLDRVMIIRTMLYTPQEMKQIIKI VMIIRTMLYTPQEMKQIIKIRAQTEGINIS R T M M K Q 0 0 0 0 0 1 1 0 0 0 1 1 2 0 1 0 2 0 1 0 0 0 10 0 1240.5832 Q9Y265;E7ETR0;H7C4G5;J3QLR1 Q9Y265 363 372 RUVBL1 RuvB-like 1 yes no 2 0.00044455 112.84 By MS/MS By matching By MS/MS By MS/MS 2 1 3 1 1.0573 1.0012 18.867 6 Median 1.0484 0.96678 NaN 1 1 Median 0.56275 0.6851 NaN 1 0 Median 1.0662 1.0208 9.2137 3 2 Median 1.2991 1.1146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83220000 34330000 48891000 25955000 12615000 13341000 1542800 762130 780660 51639000 19226000 32413000 4082900 1727100 2355800 0 0 0 0 0 0 33740 4375 35474;35475 177088;177089;177090;177091;177092;177093;177094 178962;178963;178964;178965;178966;178967;178968;178969 178965 1954 8 TMMEDFRK LSQSKASKELVERRRTMMEDFRKYRKMAQE ELVERRRTMMEDFRKYRKMAQELYMEQKNE R T M R K Y 0 1 0 1 0 0 1 0 0 0 0 1 2 1 0 0 1 0 0 0 0 0 8 1 1056.4732 P55884 P55884 752 759 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.01717 55.676 By MS/MS By MS/MS 1 2 1.1896 1.1812 10.297 3 Median 1.1341 1.1812 NaN 1 0 Median 1.2634 1.2111 14.418 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36129000 15905000 20225000 8484300 3748300 4736000 27645000 12156000 15489000 0 0 0 0 0 0 0 0 0 0 0 0 33741 2504 35476 177095;177096;177097 178970;178971;178972;178973 178972 4 TMNILELINQK ETAVSVSLSCGHFHRTMNILELINQKSDSE HFHRTMNILELINQKSDSECAEQLRQLARR R T M Q K S 0 0 2 0 0 1 1 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1315.717 H7C4W6;Q9Y2G3 H7C4W6 527 537 ATP11B Phospholipid-transporting ATPase;Probable phospholipid-transporting ATPase IF yes no 2 0.0015026 58.676 By matching By MS/MS 1 1 1.5189 1.4178 13.57 2 Median 1.5726 1.5606 NaN 1 0 Median 1.4671 1.2881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2094700 831640 1263100 605970 235280 370690 1488800 596360 892410 0 0 0 0 0 0 0 0 0 0 0 0 33742 1266 35477 177098;177099 178974 178974 1 TMNISPEQPQH ESEDTALLLLKEIYRTMNISPEQPQH____ EIYRTMNISPEQPQH_______________ R T M Q H - 0 0 1 0 0 2 1 0 1 1 0 0 1 0 2 1 1 0 0 0 0 0 11 0 1280.5819 Q9Y6Y8 Q9Y6Y8 990 1000 SEC23IP SEC23-interacting protein yes yes 2 0.0086358 58.981 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2484200 0 0 0 0 0 2484200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33743 4502 35478 177100 178975 178975 1 TMNNFLDREQYGQYALAVR DSPMFIINRNTGEIRTMNNFLDREQYGQYA FLDREQYGQYALAVRGSDRDGGADGMSAEC R T M V R G 2 2 2 1 0 2 1 1 0 0 2 0 1 1 0 0 1 0 2 1 0 0 19 1 2288.1008 Q02413 Q02413 220 238 DSG1 Desmoglein-1 yes yes 3 5.1698E-11 80.638 By MS/MS By MS/MS 2 2 0.37616 0.40878 83.624 3 Median 0.40928 0.44122 10.799 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.092799 0.10429 NaN 1 1 Median NaN NaN NaN 0 0 Median 14507000 11942000 2565200 8253600 5880100 2373500 0 0 0 0 0 0 0 0 0 6253500 6061900 191660 0 0 0 33744 2698 35479;35480 177101;177102;177103;177104 178976;178977;178978;178979 178976 1389 4 TMPVAMALLR KTNNFMSFQSYFLQKTMPVAMALLRDVHNL YFLQKTMPVAMALLRDVHNLCPKEVLTFIL K T M L R D 2 1 0 0 0 0 0 0 0 0 2 0 2 0 1 0 1 0 0 1 0 0 10 0 1101.6039 Q6P1X5 Q6P1X5 752 761 TAF2 Transcription initiation factor TFIID subunit 2 yes yes 2 0.034259 32.841 By MS/MS 1 0.94052 1.0366 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94052 1.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2742300 1558000 1184200 0 0 0 0 0 0 2742300 1558000 1184200 0 0 0 0 0 0 0 0 0 33745 3154 35481 177105 178980;178981 178981 2 TMQALEIELQSQLSMK ELVQSGKSEISELRRTMQALEIELQSQLSM MQALEIELQSQLSMKASLEGNLAETENRYC R T M M K A 1 0 0 0 0 3 2 0 0 1 3 1 2 0 0 2 1 0 0 0 0 0 16 0 1848.9325 CON__Q04695;Q04695;F5GWP8 CON__Q04695 306 321 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.00013094 51.013 By MS/MS By matching 1 2 1.6731 1.5834 66.046 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8145 1.7746 NaN 1 0 Median 0.64255 0.60401 31.321 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7571400 2811200 4760200 0 0 0 0 0 0 6762200 2306500 4455800 809180 504730 304450 0 0 0 0 0 0 + 33746 768 35482 177106;177107;177108 178982;178983 178983 2 TMQALPYNTQGNSNNYLHLSVPR RTKKDNIPEGRQATRTMQALPYNTQGNSNN TQGNSNNYLHLSVPRVELKPGETLNVNFHL R T M P R V 1 1 4 0 0 2 0 1 1 0 3 0 1 0 2 2 2 0 2 1 0 0 23 0 2617.2707 CON__Q2UVX4 CON__Q2UVX4 438 460 yes yes 3 2.3372E-08 59.356 By MS/MS 1 0.1937 0.19301 NaN 1 Median 0.1937 0.19301 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6214800 5709100 505780 6214800 5709100 505780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 33747 774 35483 177109 178984 178984 1 TMQGSEVVNVLK EPELNAAIPSANPAKTMQGSEVVNVLKSLL PAKTMQGSEVVNVLKSLLSNLDEVKKEREG K T M L K S 0 0 1 0 0 1 1 1 0 0 1 1 1 0 0 1 1 0 0 3 0 0 12 0 1303.6806 Q8WUM4 Q8WUM4 542 553 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.00030237 82.645 By MS/MS By matching 2 1 1.1436 1.101 29.17 3 Median 0.91809 0.86546 34.036 2 0 Median 1.3176 1.1514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41080000 18544000 22536000 31574000 14424000 17150000 9506800 4120400 5386400 0 0 0 0 0 0 0 0 0 0 0 0 33748 3493 35484 177110;177111;177112 178985;178986;178987 178985 3 TMQLNLSR QAIERAPSYIEIFGRTMQLNLSRSRWFDFP YIEIFGRTMQLNLSRSRWFDFPFTREEALQ R T M S R S 0 1 1 0 0 1 0 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 8 0 961.5015 Q5T4S7;A0A0A0MSW0 Q5T4S7 2374 2381 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0023862 116.73 By MS/MS 1 1.3743 1.1152 NaN 1 Median NaN NaN NaN 0 0 Median 1.3743 1.1152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10739000 4392100 6346800 0 0 0 10739000 4392100 6346800 0 0 0 0 0 0 0 0 0 0 0 0 33749 3089 35485 177113 178988 178988 1 TMQNTSDLDTAR RALMGSPQLVAAVVRTMQNTSDLDTARCTT VVRTMQNTSDLDTARCTTSILHNLSHHREG R T M A R C 1 1 1 2 0 1 0 0 0 0 1 0 1 0 0 1 3 0 0 0 0 0 12 0 1351.6038 P14923;C9JTX4;C9J826;C9JK18;C9JKY1 P14923 192 203 JUP Junction plakoglobin yes no 2 4.1172E-06 112.75 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 0.9836 0.88379 18.247 5 Median 0.89083 0.88379 NaN 1 0 Median 1.2548 1.0941 NaN 1 0 Median 0.66907 0.7113 NaN 1 0 Median 0.9836 0.83801 NaN 1 0 Median 1.0203 1.0849 NaN 1 1 Median NaN NaN NaN 0 0 Median 8807400 4484200 4323200 1414800 684580 730260 1863500 783510 1080000 2997500 1743900 1253600 527030 253670 273360 2004500 1018500 986060 0 0 0 33750 2013 35486 177114;177115;177116;177117;177118 178989;178990;178991;178992 178990 4 TMQTLLSLVR GKNVLIVEDIIDTGKTMQTLLSLVRQYNPK IDTGKTMQTLLSLVRQYNPKMVKVASLLVK K T M V R Q 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 1 2 0 0 1 0 0 10 0 1160.6587 P00492 P00492 142 151 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.00038325 107.57 By MS/MS By MS/MS By matching By matching 1 3 1 1 1.3025 1.131 9.543 6 Median 1.2372 1.1774 NaN 1 0 Median 1.2885 1.0898 9.8842 3 0 Median 1.3167 1.243 NaN 1 0 Median 1.3823 1.1314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100620000 44950000 55674000 75147000 33637000 41510000 22929000 10243000 12686000 2220900 928580 1292300 326960 141330 185630 0 0 0 0 0 0 33751 1822 35487 177119;177120;177121;177122;177123;177124 178993;178994;178995;178996;178997;178998 178996 6 TMSIVSYNHLGNNDGENLSAPLQFR VKSVLVDFLIGSGLKTMSIVSYNHLGNNDG GNNDGENLSAPLQFRSKEVSKSNVVDDMVQ K T M F R S 1 1 4 1 0 1 1 2 1 1 3 0 1 1 1 3 1 0 1 1 0 0 25 0 2776.3239 Q9NPH2 Q9NPH2 326 350 ISYNA1 Inositol-3-phosphate synthase 1 yes yes 3 4.8521E-36 135.1 By MS/MS By matching 3 1 0.44674 0.43066 34.209 4 Median 0.42756 0.42264 3.0911 3 0 Median NaN NaN NaN 0 0 Median 0.80033 0.84005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53577000 34531000 19045000 51002000 32997000 18006000 0 0 0 2574500 1534900 1039600 0 0 0 0 0 0 0 0 0 33752 4052 35488;35489 177125;177126;177127;177128 178999;179000;179001;179002 179000 1868 4 TMTDVVGNPEEER GFINDWLQSQCRDLKTMTDVVGNPEEERRA LKTMTDVVGNPEEERRAEFYFQPWAQEAVC K T M E R R 0 1 1 1 0 0 3 1 0 0 0 0 1 0 1 0 2 0 0 2 0 0 13 0 1475.6562 Q96GM5;F8VRQ4;H0YHV1 Q96GM5 465 477 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 7.4802E-07 103.34 By MS/MS By MS/MS 1 1 1.0272 0.96431 11.625 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86878 0.88821 NaN 1 0 Median 1.2144 1.0469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7845000 3713300 4131700 0 0 0 0 0 0 6336100 3015300 3320700 1508900 697970 810970 0 0 0 0 0 0 33753 3659 35490 177129;177130 179003;179004;179005 179003 3 TMTELEIDMNQR SHFGIDMLKMQKTDKTMTELEIDMNQRIGE TDKTMTELEIDMNQRIGEWELIQESGVPLK K T M Q R I 0 1 1 1 0 1 2 0 0 1 1 0 2 0 0 0 2 0 0 0 0 0 12 0 1479.6698 P45974 P45974 292 303 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.021331 69.349 By MS/MS By matching By matching 2 1 1 1.06 1.0326 20.014 4 Median 1.06 1.0447 10.018 2 0 Median 1.2401 1.0956 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79119 0.72544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10388000 4794900 5592700 9172800 4225000 4947800 842330 364890 477440 0 0 0 372500 204970 167530 0 0 0 0 0 0 33754 2332 35491 177131;177132;177133;177134 179006 179006 0 TMTLFSALR EHKPLVLCGPPGSGKTMTLFSALRALPDME PPGSGKTMTLFSALRALPDMEVVGLNFSSA K T M L R A 1 1 0 0 0 0 0 0 0 0 2 0 1 1 0 1 2 0 0 0 0 0 9 0 1038.5532 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2602 2610 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00021251 141.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 3 3 1.1407 1.153 20.413 14 Median 1.0946 1.0806 7.7699 2 0 Median 1.5972 1.3561 45.789 2 0 Median 1.0792 1.176 7.4904 4 0 Median 1.2789 1.1135 13.366 3 0 Median 1.2623 1.2527 32.38 3 0 Median NaN NaN NaN 0 0 Median 114880000 55387000 59489000 31768000 15208000 16560000 10036000 4475700 5560000 66618000 32812000 33806000 3509500 1556800 1952800 2944900 1334600 1610300 0 0 0 33755 2865 35492;35493 177135;177136;177137;177138;177139;177140;177141;177142;177143;177144;177145;177146;177147;177148;177149 179007;179008;179009;179010;179011;179012;179013;179014;179015;179016;179017;179018;179019;179020;179021 179012 1563 15 TMTQKDVEDMFSR EVIKDANLYISGLPRTMTQKDVEDMFSRFG PRTMTQKDVEDMFSRFGRIINSRVLVDQTT R T M S R F 0 1 0 2 0 1 1 0 0 0 0 1 2 1 0 1 2 0 0 1 0 0 13 1 1586.7069 Q15717;M0QZR9;M0R055 Q15717 116 128 ELAVL1 ELAV-like protein 1 yes no 2;3 0.00353 70.977 By MS/MS 3 1.5394 1.6776 23.825 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5394 1.6776 23.825 3 2 Median NaN NaN NaN 0 0 Median 32268000 12669000 19600000 0 0 0 0 0 0 0 0 0 0 0 0 32268000 12669000 19600000 0 0 0 33756 2964 35494;35495 177150;177151;177152 179022;179023;179024 179023 1631 3 TMVQLGICAFR NIQHADPPVQILYNRTMVQLGICAFRQGLT LYNRTMVQLGICAFRQGLTKDAHNALLDIQ R T M F R Q 1 1 0 0 1 1 0 1 0 1 1 0 1 1 0 0 1 0 0 1 0 0 11 0 1294.6526 Q99613;B5ME19 Q99613 612 622 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.03474 29.81 By MS/MS 1 1.0306 0.89482 NaN 1 Median NaN NaN NaN 0 0 Median 1.0306 0.89482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1278100 545270 732860 0 0 0 1278100 545270 732860 0 0 0 0 0 0 0 0 0 0 0 0 33757 3757 35496 177153 179025 179025 1 TMVSLGVK DLFAECAKIDEKGLKTMVSLGVKNPLLDLT IDEKGLKTMVSLGVKNPLLDLTALEDKPLD K T M V K N 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 2 0 0 8 0 833.46807 P32780;E9PI26 P32780 256 263 GTF2H1 General transcription factor IIH subunit 1 yes no 2 0.042262 36.395 By MS/MS 1 0.91259 0.92921 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91259 0.92921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1326700 557150 769600 0 0 0 0 0 0 1326700 557150 769600 0 0 0 0 0 0 0 0 0 33758 2219 35497 177154 179026 179026 1 TMYLEDR DNTYQATIGIDFLSKTMYLEDRTVRLQLWD IGIDFLSKTMYLEDRTVRLQLWDTAGQERF K T M D R T 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 7 0 926.41677 P20340;F5GX61;Q9NRW1;J3KR73;C9JB90 P20340 54 60 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B no no 2 0.017675 65.038 By MS/MS By matching 1 1 1.2412 1.1108 11.338 2 Median 1.0834 1.0252 NaN 1 0 Median 1.422 1.2036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10784000 4421600 6362100 7442900 3116700 4326200 3340800 1304900 2035900 0 0 0 0 0 0 0 0 0 0 0 0 33759 2079;4089 35498 177155;177156 179027 179027 1 TMYLLGYIPK YYVGGEIVTIAHLDRTMYLLGYIPKDNRLY AHLDRTMYLLGYIPKDNRLYLGDKELNIIS R T M P K D 0 0 0 0 0 0 0 1 0 1 2 1 1 0 1 0 1 0 2 0 0 0 10 0 1197.6468 P35606 P35606 560 569 COPB2 Coatomer subunit beta yes yes 2 0.014267 38.962 By matching By MS/MS By matching By matching 2 1 1 2 1.1539 1.0224 20.874 6 Median 1.2944 1.2918 33.531 2 0 Median 1.1114 0.97464 NaN 1 0 Median 1.2789 1.3264 NaN 1 0 Median 1.1539 1.016 1.3374 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7736400 3766400 3970000 2907100 1472300 1434800 3666100 1767500 1898600 937500 416100 521400 225700 110410 115290 0 0 0 0 0 0 33760 2246 35499 177157;177158;177159;177160;177161;177162 179028 179028 1 TMYPAPVTSSVYLSR INLFFTELKEEDVTKTMYPAPVTSSVYLSR TMYPAPVTSSVYLSRDPDGNKIDLVCDAMR K T M S R D 1 1 0 0 0 0 0 0 0 0 1 0 1 0 2 3 2 0 2 2 0 0 15 0 1670.8338 O95163;F5H2T0 O95163 795 809 IKBKAP Elongator complex protein 1 yes no 2 0.00035217 57.019 By MS/MS By matching 1 1 0.69222 0.63619 7.3399 2 Median 0.62523 0.60401 NaN 1 0 Median 0.76638 0.67008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7734000 5326600 2407300 6605200 4731000 1874200 1128800 595670 533140 0 0 0 0 0 0 0 0 0 0 0 0 33761 1749 35500 177163;177164 179029;179030 179030 2 TMYVLPFSMGPVGSPLSR QRAVDERFPGCMQGRTMYVLPFSMGPVGSP VLPFSMGPVGSPLSRIGVQLTDSAYVVASM R T M S R I 0 1 0 0 0 0 0 2 0 0 2 0 2 1 3 3 1 0 1 2 0 0 18 0 1937.9743 H0YMU6;H0YNG4;H0YML5;H0YM31;Q16822 H0YMU6 22 39 PCK2 Phosphoenolpyruvate carboxykinase [GTP], mitochondrial yes no 2 0.00026939 42.041 By MS/MS 1 0.47939 0.48631 NaN 1 Median 0.47939 0.48631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1137200 771250 365990 1137200 771250 365990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33762 1198 35501 177165 179031 179031 1 TNADTDGMVK YKVGKFPFAANSRAKTNADTDGMVKILGQK NSRAKTNADTDGMVKILGQKSTDRVLGAHI K T N V K I 1 0 1 2 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 10 0 1050.4652 E9PEX6;P09622 E9PEX6 408 417 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 2 0.041327 30.687 By matching By MS/MS 1 1 0.89447 0.82234 13.037 2 Median 0.76372 0.74992 NaN 1 0 Median 1.0476 0.90175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3085200 1603300 1481900 1260700 742680 517980 1824500 860640 963880 0 0 0 0 0 0 0 0 0 0 0 0 33763 915 35502 177166;177167 179032 179032 1 TNADVMTALSQGYR LYEIVTYGKIPYPGRTNADVMTALSQGYRM RTNADVMTALSQGYRMPRVENCPDELYDIM R T N Y R M 2 1 1 1 0 1 0 1 0 0 1 0 1 0 0 1 2 0 1 1 0 0 14 0 1525.7195 P07948 P07948 448 461 LYN Tyrosine-protein kinase Lyn yes yes 2 1.4713E-06 97.214 By matching By matching By MS/MS 1 1 1 1.5595 1.5906 35.327 3 Plateau 0.83756 0.83161 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99549 1.0438 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6577 1.663 NaN 1 0 Median NaN NaN NaN 0 0 Median 9431200 3558500 5872600 1541300 715090 826260 0 0 0 2838100 1451800 1386200 0 0 0 5051800 1391600 3660200 0 0 0 33764 1895 35503 177168;177169;177170 179033;179034 179033 2 TNAENEFVTIK VEDYRNKYEDEINKRTNAENEFVTIKKDVD INKRTNAENEFVTIKKDVDGAYMTKVDLQA R T N I K K 1 0 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 11 0 1264.6299 P04264;CON__P04264 P04264 278 288 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.9172E-12 144.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 8 6 12 4 5 0.043982 0.040778 158.97 42 Median 0.066496 0.063901 156.87 7 7 Median 0.062093 0.052055 147.94 8 7 Median 0.046011 0.048309 51.252 6 6 Median 0.014484 0.012204 129.97 12 12 Median 0.040485 0.043641 124.81 4 4 Median 0.10097 0.082945 288.22 5 3 Median 1437600000 1309800000 127750000 228950000 169830000 59122000 162620000 143570000 19055000 192330000 183840000 8481600 441590000 428620000 12963000 177520000 154170000 23355000 234580000 229810000 4768600 + 33765 1848 35504 177171;177172;177173;177174;177175;177176;177177;177178;177179;177180;177181;177182;177183;177184;177185;177186;177187;177188;177189;177190;177191;177192;177193;177194;177195;177196;177197;177198;177199;177200;177201;177202;177203;177204;177205;177206;177207;177208;177209;177210;177211;177212;177213 179035;179036;179037;179038;179039;179040;179041;179042;179043;179044;179045;179046;179047;179048;179049;179050;179051;179052;179053;179054;179055;179056;179057;179058;179059;179060;179061;179062;179063;179064;179065;179066;179067;179068;179069;179070;179071;179072;179073;179074;179075;179076;179077;179078;179079 179062 45 TNAENEFVTIKK VEDYRNKYEDEINKRTNAENEFVTIKKDVD NKRTNAENEFVTIKKDVDGAYMTKVDLQAK R T N K K D 1 0 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1392.7249 P04264;CON__P04264 P04264 278 289 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 4.0364E-22 164.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 19 19 16 18 13 6 0.037132 0.036306 146.84 59 Median 0.050033 0.048779 83.489 14 14 Median 0.042295 0.039356 93.927 14 14 Median 0.022393 0.025984 233.47 9 9 Median 0.022437 0.019527 183.97 9 9 Median 0.032539 0.03508 97.626 9 9 Median 0.013091 0.01172 249.09 4 4 Median 4704200000 4572800000 131330000 703300000 685050000 18249000 964120000 948010000 16118000 726530000 693250000 33288000 856260000 815060000 41199000 878320000 860930000 17388000 575630000 570550000 5087400 + 33766 1848 35505 177214;177215;177216;177217;177218;177219;177220;177221;177222;177223;177224;177225;177226;177227;177228;177229;177230;177231;177232;177233;177234;177235;177236;177237;177238;177239;177240;177241;177242;177243;177244;177245;177246;177247;177248;177249;177250;177251;177252;177253;177254;177255;177256;177257;177258;177259;177260;177261;177262;177263;177264;177265;177266;177267;177268;177269;177270;177271;177272;177273;177274;177275;177276;177277;177278;177279;177280;177281;177282;177283;177284;177285;177286;177287;177288;177289;177290;177291;177292;177293;177294;177295;177296;177297;177298;177299;177300;177301;177302;177303;177304 179080;179081;179082;179083;179084;179085;179086;179087;179088;179089;179090;179091;179092;179093;179094;179095;179096;179097;179098;179099;179100;179101;179102;179103;179104;179105;179106;179107;179108;179109;179110;179111;179112;179113;179114;179115;179116;179117;179118;179119;179120;179121;179122;179123;179124;179125;179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136;179137;179138;179139;179140;179141;179142;179143;179144;179145;179146;179147;179148;179149;179150;179151;179152;179153;179154;179155;179156;179157;179158;179159;179160;179161;179162;179163;179164;179165;179166;179167;179168;179169;179170;179171;179172;179173;179174;179175;179176;179177;179178;179179;179180;179181 179146 102 TNAVSEIKR QDVGPQAPVGSVYQKTNAVSEIKRVGKDSF GSVYQKTNAVSEIKRVGKDSFWAKAEKEEE K T N K R V 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 9 1 1016.5615 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 165 173 DBNL Drebrin-like protein yes no 2 0.0081463 56.729 By matching By MS/MS 1 1 1.1432 1.1051 2.8926 2 Median 1.0593 1.0828 NaN 1 0 Median 1.2338 1.128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1609500 790400 819110 421920 213650 208260 1187600 576750 610840 0 0 0 0 0 0 0 0 0 0 0 0 33767 4298 35506 177305;177306 179182;179183 179183 2 TNDVDFSTSSFSR SSNFIERRPPETKNRTNDVDFSTSSFSRSK NRTNDVDFSTSSFSRSKVNAGMGNSGITTE R T N S R S 0 1 1 2 0 0 0 0 0 0 0 0 0 2 0 4 2 0 0 1 0 0 13 0 1461.6372 Q9UBW7;A0A087X151 Q9UBW7 150 162 ZMYM2 Zinc finger MYM-type protein 2 yes no 2 8.3164E-07 101.93 By MS/MS 1 0.88514 0.97367 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88514 0.97367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4815700 2324700 2491000 0 0 0 0 0 0 4815700 2324700 2491000 0 0 0 0 0 0 0 0 0 33768 4252 35507 177307 179184 179184 1 TNEAQAIETAR NPDDPLANDVAEQWKTNEAQAIETARAWTR EQWKTNEAQAIETARAWTRLYAMNNI____ K T N A R A 3 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 11 0 1202.5891 P61088;F8VQQ8;Q5JXB2 P61088 131 141 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 2 1.0736E-09 172.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 2 1.1196 0.92324 26.734 8 Median 0.95268 0.91867 NaN 1 0 Median 1.0638 0.89307 5.4013 2 0 Median 1.255 1.2683 NaN 1 0 Median 1.1837 0.93079 NaN 1 0 Median 1.7318 1.8284 NaN 1 1 Median 1.1124 0.8646 0.20881 2 0 Median 72466000 33593000 38873000 16858000 8053700 8804000 19676000 9366500 10310000 29425000 13277000 16149000 3857400 1773300 2084100 842150 294770 547380 1807100 828370 978780 33769 2544 35508 177308;177309;177310;177311;177312;177313;177314;177315 179185;179186;179187;179188;179189;179190;179191;179192;179193;179194;179195;179196;179197;179198 179191 14 TNEEIHSESYNKGEISSGR LLVNESLNVENSGFRTNEEIHSESYNKGEI IHSESYNKGEISSGRKDNAEAISGHSVEAD R T N G R K 0 1 2 0 0 0 4 2 1 2 0 1 0 0 0 4 1 0 1 0 0 0 19 1 2135.972 Q8NFC6 Q8NFC6 2724 2742 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3;4 0.016816 18.538 By MS/MS By MS/MS 2 2 0.85942 0.89155 20.147 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89207 1.0308 18.994 2 0 Median 0.85658 0.79787 14.166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5201300 2676500 2524800 0 0 0 0 0 0 4113400 2038200 2075200 1087800 638320 449520 0 0 0 0 0 0 33770 3434 35509 177316;177317;177318;177319 179199;179200;179201 179199 3 TNEEIHSESYNKGEISSGRK LLVNESLNVENSGFRTNEEIHSESYNKGEI HSESYNKGEISSGRKDNAEAISGHSVEADP R T N R K D 0 1 2 0 0 0 4 2 1 2 0 2 0 0 0 4 1 0 1 0 0 0 20 2 2264.0669 Q8NFC6 Q8NFC6 2724 2743 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 4 0.064581 8.089 By MS/MS 2 0.91132 1.2067 10.446 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91132 1.2067 10.446 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1705400 847320 858110 0 0 0 0 0 0 1705400 847320 858110 0 0 0 0 0 0 0 0 0 33771 3434 35510 177320;177321 179202 179202 1 TNEGVIEFR RQAGEVTYADAHKERTNEGVIEFRSYSDMK DAHKERTNEGVIEFRSYSDMKRALDKLDGT R T N F R S 0 1 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1063.5298 A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247 A0A590UJK4 146 154 SRSF6 Serine/arginine-rich splicing factor 6 yes no 2 0.00043177 128.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 6 3 1.0122 0.97139 25.694 13 Median 1.2684 1.2064 NaN 1 0 Median 0.96176 0.82541 23.345 2 0 Median 0.93803 0.92031 NaN 1 0 Median 1.4057 1.2106 NaN 1 0 Median 0.92375 0.91945 6.287 5 1 Median 1.1297 0.97139 47.038 3 0 Median 96425000 45186000 51239000 14617000 6486800 8130200 8805900 4260000 4545900 17954000 8591200 9363000 13290000 5423300 7866400 37856000 18767000 19089000 3902000 1657400 2244600 33772 485 35511 177322;177323;177324;177325;177326;177327;177328;177329;177330;177331;177332;177333;177334;177335 179203;179204;179205;179206;179207;179208;179209;179210;179211;179212;179213;179214;179215;179216 179208 14 TNEKVELQELNDR FSLADAINTEFKNTRTNEKVELQELNDRFA TRTNEKVELQELNDRFANYIDKVRFLEQQN R T N D R F 0 1 2 1 0 1 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 1 1586.79 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 101 113 VIM;DES Vimentin;Desmin yes no 2;3 1.6879E-53 239.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 5 5 4 9 1.0232 1.0124 20.811 28 Median 0.9215 0.91561 2.2987 2 0 Median 1.3504 1.2304 20.311 3 0 Median 0.99572 1.0655 14.23 5 0 Median 1.1549 1.0838 11.806 5 2 Median 1.0387 1.0921 3.4126 4 0 Median 0.96615 0.85359 17.332 9 2 Median 816700000 380980000 435720000 116790000 57074000 59718000 56734000 22845000 33888000 62339000 29469000 32870000 108470000 46026000 62441000 269840000 122000000 147840000 202530000 103570000 98962000 33773 1907 35512 177336;177337;177338;177339;177340;177341;177342;177343;177344;177345;177346;177347;177348;177349;177350;177351;177352;177353;177354;177355;177356;177357;177358;177359;177360;177361;177362;177363 179217;179218;179219;179220;179221;179222;179223;179224;179225;179226;179227;179228;179229;179230;179231;179232;179233;179234;179235;179236;179237;179238;179239;179240;179241;179242;179243;179244;179245;179246;179247;179248;179249;179250;179251;179252;179253;179254;179255;179256;179257;179258;179259;179260;179261 179235 45 TNEMLLNFNNLSSAR AIILAQKNMLDRFEKTNEMLLNFNNLSSAR TNEMLLNFNNLSSARLQQMSERFLHHTRTL K T N A R L 1 1 4 0 0 0 1 0 0 0 3 0 1 1 0 2 1 0 0 0 0 0 15 0 1722.8359 M0QXN9;M0R0B4;M0R2G3;M0R228;M0QX74;M0QXP3;M0QY77;Q9BQD3 M0QXN9 41 55 KXD1 KxDL motif-containing protein 1 yes no 2 0.00032647 66.289 By MS/MS 1 0.98903 0.933 NaN 1 Median 0.98903 0.933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3833700 1779600 2054000 3833700 1779600 2054000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33774 1408 35513 177364 179262;179263 179263 2 TNEQMHQLVAAYK IGTDEKCLIEILASRTNEQMHQLVAAYKDA SRTNEQMHQLVAAYKDAYERDLEADIIGDT R T N Y K D 2 0 1 0 0 2 1 0 1 0 1 1 1 0 0 0 1 0 1 1 0 0 13 0 1531.7453 P08133;E5RK63;E5RJF5 P08133 123 135 ANXA6 Annexin A6;Annexin yes no 2;3 1.1893E-15 190.26 By MS/MS By MS/MS By MS/MS 5 2 1 1.3453 0.9976 9.05 8 Linear 1.0536 0.98246 2.1351 5 0 Median 1.4246 1.1846 6.0077 2 0 Median 1.0241 1.0768 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 180840000 82719000 98125000 85497000 41489000 44009000 90013000 38356000 51656000 5334300 2873900 2460500 0 0 0 0 0 0 0 0 0 33775 1898 35514 177365;177366;177367;177368;177369;177370;177371;177372 179264;179265;179266;179267;179268;179269;179270;179271;179272;179273;179274;179275 179269 12 TNETYGKLEAVQYK IQEIVDKVKPQLEEKTNETYGKLEAVQYKT KTNETYGKLEAVQYKTQVVAGTNYYIKVRA K T N Y K T 1 0 1 0 0 1 2 1 0 0 1 2 0 0 0 0 2 0 2 1 0 0 14 1 1642.8203 P01040;C9J0E4 P01040 31 44 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 2;3 0.00029647 89.805 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 1 1 0.20145 0.17977 183.89 7 Median 1.1423 1.2448 NaN 1 0 Median 0.035804 0.028093 143.4 2 2 Median NaN NaN NaN 0 0 Median 0.93658 0.83398 173.49 3 3 Median NaN NaN NaN 0 0 Median 0.20145 0.17977 NaN 1 0 Median 23050000 17439000 5611000 7880300 4306000 3574400 4197100 4153600 43488 0 0 0 7173700 5473100 1700600 2389200 2389200 0 1409400 1116800 292590 33776 1830 35515 177373;177374;177375;177376;177377;177378;177379;177380;177381 179276;179277;179278;179279;179280;179281;179282;179283 179277 8 TNFISSHTEKPVR LGEERGPVLEVIVSRTNFISSHTEKPVRIV SRTNFISSHTEKPVRIVGLSTALANARDLA R T N V R I 0 1 1 0 0 0 1 0 1 1 0 1 0 1 1 2 2 0 0 1 0 0 13 1 1514.7841 Q8N3C0 Q8N3C0 1473 1485 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 1.0384E-06 97.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0251 1.1839 25.69 5 Median 1.2081 1.2323 38.174 2 0 Median 1.0251 0.94891 NaN 1 0 Median 1.0241 1.1839 NaN 1 0 Median 1.5949 1.5397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24874000 11596000 13278000 7611400 3198200 4413200 12551000 6448400 6102200 2575100 1179900 1395200 2137100 769370 1367700 0 0 0 0 0 0 33777 3366 35516 177382;177383;177384;177385;177386 179284;179285;179286;179287;179288;179289;179290;179291;179292 179290 9 TNFVQPMPGEGLRPSLPTQAHTTQPTPFK HASRSAESKTIEFGKTNFVQPMPGEGLRPS SLPTQAHTTQPTPFKFNSNFKSNDGDFTFS K T N F K F 1 1 1 0 0 3 1 2 1 0 2 1 1 2 6 1 5 0 0 1 0 0 29 1 3176.6077 P49792 P49792 1004 1032 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 4 8.4112E-06 37.934 By MS/MS 1 0.43006 0.49871 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43006 0.49871 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11844000 9465200 2378700 0 0 0 0 0 0 11844000 9465200 2378700 0 0 0 0 0 0 0 0 0 33778 2401 35517 177387 179293 179293 1 TNFYAEQGGQASDR ASVGKGQRCGLLLDRTNFYAEQGGQASDRG RTNFYAEQGGQASDRGYLVRAGQEDVLFPV R T N D R G 2 1 1 1 0 2 1 2 0 0 0 0 0 1 0 1 1 0 1 0 0 0 14 0 1542.6699 Q5JTZ9 Q5JTZ9 562 575 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 2 0.002275 58.676 By MS/MS 2 0.75834 0.74958 9.5309 2 Median 0.75834 0.74958 9.5309 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4098600 2373400 1725300 4098600 2373400 1725300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33779 3054 35518 177388;177389 179294;179295 179294 2 TNGILFCGR FCADHPFLFFIQHSKTNGILFCGRFSSP__ FIQHSKTNGILFCGRFSSP___________ K T N G R F 0 1 1 0 1 0 0 2 0 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1036.5124 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12 A0A024QZX5 368 376 SERPINB6 Serpin B6 yes no 2 0.013814 45.081 By MS/MS 1 1.3185 1.0665 NaN 1 Median NaN NaN NaN 0 0 Median 1.3185 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1005600 398420 607140 0 0 0 1005600 398420 607140 0 0 0 0 0 0 0 0 0 0 0 0 33780 1 35519 177390 179296 179296 1 TNHIGHTGYLNTVTVSPDGSLCASGGK DKLVKVWNLANCKLKTNHIGHTGYLNTVTV VTVSPDGSLCASGGKDGQAMLWDLNEGKHL K T N G K D 1 0 2 1 1 0 0 5 2 1 2 1 0 0 1 3 4 0 1 2 0 0 27 0 2742.3031 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;H0Y8W2;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;H0Y8R5 P63244 186 212 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3;4 5.8575E-28 91.583 By MS/MS By MS/MS 1 2 0.93966 0.7899 9.467 3 Median 0.76249 0.70114 NaN 1 0 Median 0.97432 0.81713 4.7935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69916000 34820000 35095000 13127000 7197800 5929200 56789000 27622000 29166000 0 0 0 0 0 0 0 0 0 0 0 0 33781 2624 35520 177391;177392;177393 179297;179298;179299;179300 179297 4 TNHIYVSSDDIK EWRVRAISAANLHLRTNHIYVSSDDIKETG HLRTNHIYVSSDDIKETGYTYILPKNVLKK R T N I K E 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 2 1 0 1 1 0 0 12 0 1390.6729 Q6P2Q9 Q6P2Q9 2087 2098 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.9932E-06 122.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 1.0026 1.0503 9.8495 9 Median 0.97174 0.91727 1.5716 2 0 Median 1.3226 1.1557 6.2687 3 0 Median 0.92621 1.0217 NaN 1 0 Median 1.3054 1.1802 NaN 1 0 Median 0.97177 1.0219 3.8648 2 1 Median NaN NaN NaN 0 0 Median 41210000 20772000 20438000 3245400 1739700 1505700 13565000 5936900 7627600 13325000 6881000 6444300 2698200 1222400 1475800 8376700 4992400 3384400 0 0 0 33782 3157 35521 177394;177395;177396;177397;177398;177399;177400;177401;177402 179301;179302;179303;179304;179305;179306;179307;179308;179309;179310;179311;179312;179313 179311 13 TNHIYVSSDDIKETGYTYILPK EWRVRAISAANLHLRTNHIYVSSDDIKETG SDDIKETGYTYILPKNVLKKFICISDLRAQ R T N P K N 0 0 1 2 0 0 1 1 1 3 1 2 0 0 1 2 3 0 3 1 0 0 22 1 2556.2748 Q6P2Q9 Q6P2Q9 2087 2108 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 8.7201E-05 35.174 By MS/MS 2 0.69513 0.80456 8.0061 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69513 0.80456 8.0061 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22106000 11457000 10649000 0 0 0 0 0 0 22106000 11457000 10649000 0 0 0 0 0 0 0 0 0 33783 3157 35522 177403;177404 179314;179315;179316 179316 3 TNHSNIMDDPFIR AYQNNDITEFEKILKTNHSNIMDDPFIREH LKTNHSNIMDDPFIREHIEELLRNIRTQVL K T N I R E 0 1 2 2 0 0 0 0 1 2 0 0 1 1 1 1 1 0 0 0 0 0 13 0 1558.7198 P61201;B4DIH5;H0YMC2 P61201 332 344 COPS2 COP9 signalosome complex subunit 2 yes no 3 0.00026738 61.212 By matching By MS/MS By matching 1 1 1 1.0505 1.0405 7.6013 3 Plateau NaN NaN NaN 0 0 Median 1.0339 0.90872 NaN 1 0 Median 1.0505 1.0405 NaN 1 0 Median 1.1848 1.0323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10235000 4685800 5549500 0 0 0 585970 327750 258220 8377300 3748900 4628400 1272100 609160 662900 0 0 0 0 0 0 33784 2548 35523 177405;177406;177407 179317 179317 1 TNIDESAMPPPPPQGVK EEPSRLQESVMEASRTNIDESAMPPPPPQG IDESAMPPPPPQGVKRKAGQIDPEPVMPPQ R T N V K R 1 0 1 1 0 1 1 1 0 1 0 1 1 0 5 1 1 0 0 1 0 0 17 0 1776.8716 O60216;E5RFZ5 O60216 461 477 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 9.4957E-06 69.451 By MS/MS By MS/MS By matching 1 1 1 0.65071 0.56541 72.946 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40785 0.44601 NaN 1 1 Median 0.65071 0.56541 NaN 1 0 Median 1.6653 1.7469 NaN 1 0 Median NaN NaN NaN 0 0 Median 14852000 8784300 6067700 0 0 0 0 0 0 9029700 6180300 2849400 1333500 877170 456310 4488800 1726800 2762000 0 0 0 33785 1603 35524 177408;177409;177410 179318;179319;179320;179321 179318 4 TNIIPVIEDARHPHK SHRSGRDLINLAKKRTNIIPVIEDARHPHK TNIIPVIEDARHPHKYRMLIAMVDVIFADV R T N H K Y 1 1 1 1 0 0 1 0 2 3 0 1 0 0 2 0 1 0 0 1 0 0 15 1 1738.9479 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4 P22087 208 222 FBL rRNA 2-O-methyltransferase fibrillarin yes no 3;4 3.6833E-06 73.91 By MS/MS 2 0.75198 0.822 6.376 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75198 0.822 6.376 2 1 Median NaN NaN NaN 0 0 Median 49032000 27230000 21801000 0 0 0 0 0 0 0 0 0 0 0 0 49032000 27230000 21801000 0 0 0 33786 2097 35525 177411;177412 179322;179323 179323 2 TNIIPVLEDAR SHRAGRDLVNVAKKRTNIIPVLEDARHPLK AKKRTNIIPVLEDARHPLKYRMLIGMVDVI R T N A R H 1 1 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1239.6823 A6NHQ2 A6NHQ2 220 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2 0.00013836 105.2 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 1 0.93304 0.88512 15.563 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93535 0.89634 1.7812 2 0 Median 1.2053 1.0208 3.9327 2 0 Median 0.78803 0.7875 18.265 4 1 Median 1.1085 0.88361 NaN 1 0 Median 218590000 111520000 107070000 0 0 0 0 0 0 82359000 41030000 41329000 5507100 2560500 2946600 109400000 57762000 51641000 21322000 10170000 11152000 33787 517 35526 177413;177414;177415;177416;177417;177418;177419;177420;177421;177422 179324;179325;179326;179327;179328;179329;179330;179331;179332;179333;179334;179335;179336;179337;179338;179339;179340;179341 179325 18 TNIQVTVTGPSSPSPVK LKALSEFAALMNTERTNIQVTVTGPSSPSP IQVTVTGPSSPSPVKFLIDTHNRLLLQTAE R T N V K F 0 0 1 0 0 1 0 1 0 1 0 1 0 0 3 3 3 0 0 3 0 0 17 0 1710.9152 Q6YHK3 Q6YHK3 1203 1219 CD109 CD109 antigen yes yes 2 1.6967E-12 123.64 By MS/MS By MS/MS 1 1 0.55166 0.50935 9.0832 2 Median 0.4959 0.47766 NaN 1 0 Median 0.6137 0.54314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8943600 5683400 3260300 6694800 4278000 2416800 2248800 1405300 843480 0 0 0 0 0 0 0 0 0 0 0 0 33788 3193 35527 177423;177424 179342;179343;179344;179345 179343 4 TNIVALLQK ERKLRETEEKLQKLRTNIVALLQKVQEDID KLQKLRTNIVALLQKVQEDIDINTDDELDA R T N Q K V 1 0 1 0 0 1 0 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 9 0 998.61243 Q9Y6X9;H7C3M1;H7C1V1 Q9Y6X9 999 1007 MORC2 MORC family CW-type zinc finger protein 2 yes no 2 0.014496 44.447 By MS/MS By matching 1 1 1.6068 1.5621 37.229 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1133 1.2006 NaN 1 0 Median 2.319 2.0326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2253800 1094500 1159300 0 0 0 0 0 0 2122900 1057100 1065800 130870 37337 93536 0 0 0 0 0 0 33789 4501 35528 177425;177426 179346;179347 179347 2 TNIVTASVDAINFHDK LMDEVAGIVAARHCKTNIVTASVDAINFHD NIVTASVDAINFHDKIRKGCVITISGRMTF K T N D K I 2 0 2 2 0 0 0 0 1 2 0 1 0 1 0 1 2 0 0 2 0 0 16 0 1743.8792 O00154;K7EKP8 O00154 268 283 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 3 0.00024954 40.52 By MS/MS By matching By MS/MS 2 2 1 1.1459 1.2657 16.345 5 Median 1.0468 0.98398 1.6579 2 0 Median 1.5827 1.3442 4.4085 2 0 Median 1.1459 1.2657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15755000 6616500 9138500 7042400 3112600 3929800 6393200 2446500 3946700 2319400 1057300 1262100 0 0 0 0 0 0 0 0 0 33790 1443 35529 177427;177428;177429;177430;177431 179348;179349;179350 179349 3 TNIVTASVDAINFHDKIR LMDEVAGIVAARHCKTNIVTASVDAINFHD VTASVDAINFHDKIRKGCVITISGRMTFTS K T N I R K 2 1 2 2 0 0 0 0 1 3 0 1 0 1 0 1 2 0 0 2 0 0 18 1 2013.0643 O00154;K7EKP8 O00154 268 285 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 3 0.0001067 39.849 By MS/MS 1 0.98205 1.0522 NaN 1 Median 0.98205 1.0522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7289700 3416800 3872900 7289700 3416800 3872900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33791 1443 35530 177432 179351 179351 1 TNKDEKDILR PCSGTGVISKDPAVKTNKDEKDILRCAHLQ DPAVKTNKDEKDILRCAHLQKELLLSAIDS K T N L R C 0 1 1 2 0 0 1 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 10 2 1230.6568 P46087 P46087 477 486 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 0.0096677 59.8 By MS/MS By MS/MS By matching 2 6 1 0.93192 1.1375 9.0147 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88628 1.1041 7.006 2 0 Median NaN NaN NaN 0 0 Median 0.96264 1.1177 6.9831 6 0 Median 1.4709 1.3701 NaN 1 0 Median 11485000 5399900 6084600 0 0 0 0 0 0 641710 322500 319200 0 0 0 10580000 4970400 5610000 262460 107030 155420 33792 2338 35531 177433;177434;177435;177436;177437;177438;177439;177440;177441 179352;179353;179354;179355;179356;179357;179358 179356 7 TNKEEHKLQDSVPENK KRIEPAEELNSNDMKTNKEEHKLQDSVPEN NKEEHKLQDSVPENKGISLRSRRQNKTEAE K T N N K G 0 0 2 1 0 1 3 0 1 0 1 3 0 0 1 1 1 0 0 1 0 0 16 2 1894.9385 P46013 P46013 3072 3087 MKI67 Antigen KI-67 yes yes 4 0.063797 10.057 By MS/MS 2 0.92088 1.1045 1.4902 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92088 1.1045 1.4902 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1007000 542440 464610 0 0 0 0 0 0 1007000 542440 464610 0 0 0 0 0 0 0 0 0 33793 2335 35532 177442;177443 179359 179359 1 TNLATGIPSSK ______________________________ MPSRTNLATGIPSSKVKYSRLSSTDDGYID R T N S K V 1 0 1 0 0 0 0 1 0 1 1 1 0 0 1 2 2 0 0 0 0 0 11 0 1087.5873 Q5JWB9;A0A087WTT2;Q96A57 Q5JWB9 6 16 TMEM230 Transmembrane protein 230 yes no 2 0.00013831 87.298 By MS/MS By MS/MS By matching 1 1 1 1.0639 0.96869 21.826 3 Median 1.0639 0.96869 NaN 1 0 Median 0.9505 0.78157 NaN 1 0 Median 1.1968 1.2093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30577000 14848000 15728000 10296000 4984600 5311400 19504000 9460100 10044000 776680 403720 372960 0 0 0 0 0 0 0 0 0 33794 19 35533 177444;177445;177446 179360;179361 179361 2 TNLDESDVQPVK GGVGFDINCGVRLLRTNLDESDVQPVKEQL LLRTNLDESDVQPVKEQLAQAMFDHIPVGV R T N V K E 0 0 1 2 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 12 0 1343.6569 Q9Y3I0 Q9Y3I0 129 140 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 3.5722E-06 107.83 By MS/MS By MS/MS By MS/MS 1 1 1 0.86793 0.79016 26.987 3 Median NaN NaN NaN 0 0 Median 0.92508 0.79016 NaN 1 0 Median 0.86793 0.85912 NaN 1 0 Median 0.60566 0.51921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21925000 12144000 9780800 0 0 0 3057700 1565800 1491900 7069200 3744300 3324900 11798000 6833900 4964000 0 0 0 0 0 0 33795 4430 35534 177447;177448;177449 179362;179363;179364;179365;179366;179367;179368 179366 7 TNLDESDVQPVKEQLAQAMFDHIPVGVGSK GGVGFDINCGVRLLRTNLDESDVQPVKEQL AQAMFDHIPVGVGSKGVIPMNAKDLEEALE R T N S K G 2 0 1 3 0 3 2 2 1 1 2 2 1 1 2 2 1 0 0 4 0 0 30 1 3251.6132 Q9Y3I0 Q9Y3I0 129 158 RTCB tRNA-splicing ligase RtcB homolog yes yes 4 3.366E-05 28.964 By matching By MS/MS By matching 1 1 1 0.81019 0.84784 17.884 3 Plateau 0.77742 0.75193 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81019 0.84784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55819 0.59638 NaN 1 0 Median NaN NaN NaN 0 0 Median 8393300 4423800 3969500 1610300 846010 764340 0 0 0 5994100 3179400 2814600 0 0 0 788880 398340 390540 0 0 0 33796 4430 35535 177450;177451;177452 179369 179369 1 TNLEDVGR GKYGALVICETSEQKTNLEDVGRRLGQHVV CETSEQKTNLEDVGRRLGQHVVGMAPLSVG K T N G R R 0 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 902.44576 P43897 P43897 247 254 TSFM Elongation factor Ts, mitochondrial yes yes 2 0.0058621 73.665 By matching By MS/MS 1 1 1.4994 1.2549 15.483 2 Median NaN NaN NaN 0 0 Median 1.6671 1.4001 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3486 1.1247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5315900 2178200 3137700 0 0 0 2405300 1091800 1313500 0 0 0 2910600 1086300 1824200 0 0 0 0 0 0 33797 2328 35536 177453;177454 179370 179370 1 TNLEEFASK EDQLAQMSKQLDMFKTNLEEFASKHKQEIR QLDMFKTNLEEFASKHKQEIRKNPEFRVQF K T N S K H 1 0 1 0 0 0 2 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1037.5029 Q96H20;H0Y8S5;D6RBI1;D6RJ86;D6RFY6 Q96H20 45 53 SNF8 Vacuolar-sorting protein SNF8 yes no 2 0.046574 45.161 By MS/MS 1 0.73422 0.69486 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73422 0.69486 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4593500 2521700 2071800 0 0 0 0 0 0 4593500 2521700 2071800 0 0 0 0 0 0 0 0 0 33798 3664 35537 177455 179371 179371 1 TNLIVNYLPQNMTQDELR YEDHMAEDCRGDIGRTNLIVNYLPQNMTQD IVNYLPQNMTQDELRSLFSSIGEVESAKLI R T N L R S 0 1 3 1 0 2 1 0 0 1 3 0 1 0 1 0 2 0 1 1 0 0 18 0 2161.0838 Q15717;M0QZR9 Q15717 20 37 ELAVL1 ELAV-like protein 1 yes no 2;3 2.6719E-42 216.46 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 2 12 6 0.91063 0.84173 10.16 25 Median 1.0501 1.0157 NaN 1 0 Median 1.0525 0.88304 19.221 2 0 Median 0.79367 0.77781 0.27607 2 0 Median 1.013 0.85162 0.63348 2 0 Median 0.84805 0.84501 10.241 12 0 Median 0.94632 0.80273 8.0964 6 0 Median 180090000 93538000 86550000 1011700 504600 507060 5360900 2478500 2882400 17023000 8733900 8289200 904370 437480 466890 148060000 77696000 70369000 7723200 3688200 4035000 33799 2964 35538;35539 177456;177457;177458;177459;177460;177461;177462;177463;177464;177465;177466;177467;177468;177469;177470;177471;177472;177473;177474;177475;177476;177477;177478;177479;177480 179372;179373;179374;179375;179376;179377;179378;179379;179380;179381;179382;179383;179384;179385;179386;179387;179388;179389;179390;179391;179392;179393;179394 179384 1632 23 TNLLLQAHLSR PHKLNNPKFNDPHVKTNLLLQAHLSRMQLS PHVKTNLLLQAHLSRMQLSAELQSDTEEIL K T N S R M 1 1 1 0 0 1 0 0 1 0 4 0 0 0 0 1 1 0 0 0 0 0 11 0 1264.7252 O75643 O75643 1891 1901 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 4.0914E-05 137.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 5 5 2 5 2 1.1906 1.1159 16.554 23 Median 1.3129 1.2389 11.907 4 0 Median 1.3134 1.1207 14.987 5 0 Median 0.95747 1.0512 11.83 5 0 Median 1.3359 1.1762 1.1089 2 0 Median 1.0959 1.1042 23.839 5 0 Median 1.0941 0.91756 0.36672 2 0 Median 195710000 89836000 105880000 45753000 18097000 27656000 25586000 11154000 14432000 97536000 48142000 49394000 10537000 4737100 5800000 12306000 5945800 6360300 3996600 1760900 2235800 33800 1688 35540 177481;177482;177483;177484;177485;177486;177487;177488;177489;177490;177491;177492;177493;177494;177495;177496;177497;177498;177499;177500;177501;177502;177503 179395;179396;179397;179398;179399;179400;179401;179402;179403;179404;179405;179406;179407;179408;179409;179410;179411;179412;179413;179414 179403 19 TNLPIFK GVGRGRFTTYEIRVKTNLPIFKLKESTVRR TTYEIRVKTNLPIFKLKESTVRRRYSDFEW K T N F K L 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 7 0 831.48544 O60493;A0A087X0R6;Q9UMY4 O60493 55 61 SNX3;SNX12 Sorting nexin-3;Sorting nexin-12 no no 2 0.036774 46.663 By matching By matching By MS/MS By matching 1 1 1 2 0.99121 0.85112 12.008 5 Median 0.89972 0.84825 NaN 1 0 Median 0.99121 0.85112 NaN 1 0 Median 1.0542 0.99303 NaN 1 0 Median 1.0061 0.82748 18.461 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28688000 14678000 14010000 16847000 9435900 7411300 4236800 2014200 2222500 5919200 2480400 3438800 1684900 747360 937540 0 0 0 0 0 0 33801 1616;112 35541 177504;177505;177506;177507;177508 179415 179415 1 TNLSVHEDKNRVPYVK EIYLDKIRDLLDVSKTNLSVHEDKNRVPYV NLSVHEDKNRVPYVKGCTERFVCSPDEVMD K T N V K G 0 1 2 1 0 0 1 0 1 0 1 2 0 0 1 1 1 0 1 3 0 0 16 2 1898.001 P33176 P33176 151 166 KIF5B Kinesin-1 heavy chain yes yes 4 0.0072498 25.319 By MS/MS 1 0.80041 0.90978 NaN 1 Median 0.80041 0.90978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5216500 2779800 2436700 5216500 2779800 2436700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33802 2221 35542 177509 179416;179417 179416 2 TNLVWDEVSGQWR WQQFARLKGIRPKKKTNLVWDEVSGQWRRR KKTNLVWDEVSGQWRRRWGYQRARDDTKEW K T N W R R 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 1 2 0 2 0 0 13 0 1588.7634 Q15050 Q15050 129 141 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 7.0032E-06 122.42 By MS/MS 3 1.0919 1.0978 8.3545 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0919 1.0978 8.3545 3 0 Median NaN NaN NaN 0 0 Median 13690000 6549600 7140500 0 0 0 0 0 0 0 0 0 0 0 0 13690000 6549600 7140500 0 0 0 33803 2920 35543 177510;177511;177512 179418;179419;179420;179421 179421 4 TNMLLELAR DEHDCEPSDPEQETRTNMLLELARSLFNRM PEQETRTNMLLELARSLFNRMDFEDLGLVV R T N A R S 1 1 1 0 0 0 1 0 0 0 3 0 1 0 0 0 1 0 0 0 0 0 9 0 1059.5747 Q9P0P0;F8WBU5;C9J391;C9J1C6;H7C426 Q9P0P0 21 29 RNF181 E3 ubiquitin-protein ligase RNF181 yes no 2 0.0086494 66.621 By MS/MS 1 0.69968 0.68097 NaN 1 Median 0.69968 0.68097 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9723100 5194100 4529000 9723100 5194100 4529000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33804 4207 35544 177513 179422 179422 1 TNNFSAFLANVR PHLEGLAEFQENVRKTNNFSAFLANVRKAF VRKTNNFSAFLANVRKAFTATVYN______ K T N V R K 2 1 3 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 12 0 1352.6837 Q9HBM1 Q9HBM1 204 215 SPC25 Kinetochore protein Spc25 yes yes 2 0.0044866 64.297 By MS/MS By MS/MS 1 1 1.1021 1.0417 5.5915 2 Median 1.1476 1.0837 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0585 1.0013 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8072300 3530300 4542000 5638100 2191100 3447100 0 0 0 2434200 1339300 1094900 0 0 0 0 0 0 0 0 0 33805 4021 35545 177514;177515 179423;179424 179424 2 TNNHIGGGAFSVDSPR DMDSTLDSSTGSLLKTNNHIGGGAFSVDSP NNHIGGGAFSVDSPRIYSNSLPPSAAVAAS K T N P R I 1 1 2 1 0 0 0 3 1 1 0 0 0 1 1 2 1 0 0 1 0 0 16 0 1627.7703 Q9Y2U8 Q9Y2U8 389 404 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 3.0788E-05 68.481 By MS/MS By MS/MS 1 2 1.065 0.90471 30.713 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84821 0.89988 NaN 1 0 Median 1.3777 1.1788 37.424 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19979000 9799600 10179000 0 0 0 0 0 0 13055000 7141200 5913900 6924000 2658400 4265600 0 0 0 0 0 0 33806 4392 35546 177516;177517;177518 179425;179426 179425 2 TNNPLPLEQR SQLLAATCLTKLVSRTNNPLPLEQRIDIRN KLVSRTNNPLPLEQRIDIRNYVLNYLATRP R T N Q R I 0 1 2 0 0 1 1 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 10 0 1180.62 E7ESC6;Q9UIA9;H0YBE1 E7ESC6 75 84 XPO7 Exportin-7 yes no 2 0.0042584 68.224 By MS/MS 1 1.2229 1.0367 NaN 1 Median NaN NaN NaN 0 0 Median 1.2229 1.0367 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4053700 1646200 2407500 0 0 0 4053700 1646200 2407500 0 0 0 0 0 0 0 0 0 0 0 0 33807 885 35547 177519 179427 179427 1 TNNVSEHEDTDKYR NVEELVIVLKKEVIKTNNVSEHEDTDKYRQ KTNNVSEHEDTDKYRQLLVRTLHSCSVRFP K T N Y R Q 0 1 2 2 0 0 2 0 1 0 0 1 0 0 0 1 2 0 1 1 0 0 14 1 1706.7496 P53618;E9PP73 P53618 367 380 COPB1 Coatomer subunit beta yes no 3 0.00028642 56.482 By matching By MS/MS 2 2 1.1479 1.1408 4.4475 4 Median 1.0738 1.0995 3.31 2 0 Median 1.2037 1.1745 2.1937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3935100 1702200 2232900 1309400 634400 675020 2625700 1067800 1557900 0 0 0 0 0 0 0 0 0 0 0 0 33808 2472 35548 177520;177521;177522;177523 179428;179429 179429 2 TNPEIQSTLR RMAEAELVQEGKARKTNPEIQSTLRKRLYL GKARKTNPEIQSTLRKRLYLQ_________ K T N L R K 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 1 2 0 0 0 0 0 10 0 1157.6041 P31944 P31944 227 236 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 0.03492 46.462 By MS/MS 1 0.12379 0.089403 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.12379 0.089403 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2568600 2497400 71277 0 0 0 0 0 0 0 0 0 2568600 2497400 71277 0 0 0 0 0 0 33809 2209 35549 177524 179430 179430 1 TNPSQLNAVEFLWDPAKR LDLDIPMSVGIIDTRTNPSQLNAVEFLWDP SQLNAVEFLWDPAKRTSAFIQVHCISTEFT R T N K R T 2 1 2 1 0 1 1 0 0 0 2 1 0 1 2 1 1 1 0 1 0 0 18 1 2085.0643 Q9NZI7 Q9NZI7 162 179 UBP1 Upstream-binding protein 1 yes yes 3 0.00032669 36.112 By MS/MS 1 0.82104 0.9113 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82104 0.9113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1244200 696700 547490 0 0 0 0 0 0 1244200 696700 547490 0 0 0 0 0 0 0 0 0 33810 4187 35550 177525 179431;179432 179431 2 TNQEHAALEAENSKGEVETLK KGRVENLERELEIARTNQEHAALEAENSKG ALEAENSKGEVETLKAKIEGMTQSLRGLEL R T N L K A 3 0 2 0 0 1 5 1 1 0 2 2 0 0 0 1 2 0 0 1 0 0 21 1 2297.1135 P49454 P49454 2350 2370 CENPF Centromere protein F yes yes 3;4 2.4173E-12 78.975 By MS/MS By matching 2 1 0.98027 1.1112 14.362 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97963 1.11 0.37741 2 0 Median 0.85197 0.86556 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31054000 15493000 15562000 0 0 0 0 0 0 29242000 14445000 14798000 1811800 1048000 763820 0 0 0 0 0 0 33811 2383 35551 177526;177527;177528 179433;179434;179435 179435 3 TNQELQEINR LGTDEDSLIEIICSRTNQELQEINRVYKEM IICSRTNQELQEINRVYKEMYKTDLEKDII R T N N R V 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1243.6157 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YN28;H0YL33;H0YMM1;H0YNA0;H0YN52;H0YLE2 P07355 136 145 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 8.395E-53 233.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 3 4 3 1.1559 1.0504 17.174 18 Median 1.1213 1.086 12.504 4 0 Median 1.1382 0.95719 21.838 4 0 Median 1.2301 1.1836 6.8455 2 1 Median 1.2213 0.97719 16.365 3 0 Plateau 1.0937 1.0986 4.9942 2 0 Median 1.4478 1.1725 14.098 3 2 Median 619150000 275510000 343640000 90024000 40388000 49635000 127620000 56242000 71374000 169640000 76414000 93227000 178310000 78444000 99868000 36081000 16472000 19609000 17476000 7547500 9928100 33812 1885 35552 177529;177530;177531;177532;177533;177534;177535;177536;177537;177538;177539;177540;177541;177542;177543;177544;177545;177546;177547;177548 179436;179437;179438;179439;179440;179441;179442;179443;179444;179445;179446;179447;179448;179449;179450;179451;179452;179453;179454;179455;179456;179457;179458;179459;179460;179461;179462;179463;179464;179465;179466;179467;179468;179469;179470;179471;179472 179466 37 TNQIGTVNDR QLCAKYSKEYGKLCRTNQIGTVNDRLMHKL GKLCRTNQIGTVNDRLMHKLSVEAPPKILV R T N D R L 0 1 2 1 0 1 0 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 10 0 1116.5523 P53990;H3BMU1;H3BUI0;H3BQF7;J3KR23 P53990 138 147 IST1 IST1 homolog yes no 2 0.04531 29.473 By MS/MS 2 1.0905 1.1008 22.419 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0905 1.1008 22.419 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2009000 946050 1063000 0 0 0 0 0 0 2009000 946050 1063000 0 0 0 0 0 0 0 0 0 33813 2477 35553 177549;177550 179473 179473 1 TNQLLQDIK RLPQTGMKPLPVFQRTNQLLQDIKLLENVT LPVFQRTNQLLQDIKLLENVTQEQNELLKV R T N I K L 0 0 1 1 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1071.5924 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 3970 3978 SYNE2 Nesprin-2 yes no 2 0.00083103 95.502 By MS/MS By MS/MS 1 1 1.1201 1.1289 38.995 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8011 0.85685 NaN 1 0 Median 1.5662 1.4873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11208000 5877400 5330500 0 0 0 0 0 0 9972200 5418200 4554000 1235800 459230 776570 0 0 0 0 0 0 33814 3521 35554 177551;177552 179474;179475;179476 179474 3 TNQLQYMQNVVVK PPPPEVSNPSKPGRKTNQLQYMQNVVVKTL RKTNQLQYMQNVVVKTLWKHQFAWPFYQPV K T N V K T 0 0 2 0 0 3 0 0 0 0 1 1 1 0 0 0 1 0 1 3 0 0 13 0 1563.8079 Q15059;A9J571 Q15059 36 48 BRD3 Bromodomain-containing protein 3 yes no 2 1.6474E-06 116.52 By MS/MS By matching By MS/MS 2 2 1 0.90064 0.93622 30.473 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83322 0.90944 4.1039 2 0 Median 1.6217 1.3964 39.575 2 0 Median 0.90064 0.93075 NaN 1 0 Median NaN NaN NaN 0 0 Median 33525000 17729000 15797000 0 0 0 0 0 0 27568000 14849000 12719000 1143700 475050 668700 4813400 2404700 2408700 0 0 0 33815 2923 35555;35556 177553;177554;177555;177556;177557 179477;179478;179479;179480;179481;179482 179480 1606 6 TNQMYSYFMFTR PWMVNIKEDTDFFQRTNQMYSYFMFTRGGP FQRTNQMYSYFMFTRGGPYWQEVKATLLKL R T N T R G 0 1 1 0 0 1 0 0 0 0 0 0 2 2 0 1 2 0 2 0 0 0 12 0 1587.685 H0YL22;Q9Y375 H0YL22 233 244 NDUFAF1 Complex I intermediate-associated protein 30, mitochondrial yes no 2 0.011647 36.525 By MS/MS By matching 1 1 1.2573 1.1495 2.695 2 Median 1.1657 1.1278 NaN 1 0 Median 1.356 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1266000 573330 692710 1025100 464120 560970 240950 109210 131740 0 0 0 0 0 0 0 0 0 0 0 0 33816 1195 35557 177558;177559 179483 179483 1 TNRPPLSLSR STFNQVVLKRLFMSRTNRPPLSLSRMIRKM LFMSRTNRPPLSLSRMIRKMKLPGRENKTA R T N S R M 0 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 10 1 1139.6411 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0;F8VUA6 J3QQ67 58 67 RPL18 60S ribosomal protein L18 yes no 2 0.0025578 105.98 By MS/MS By MS/MS By MS/MS 1 1 1 0.81773 0.82526 9.038 3 Plateau 0.71843 0.76795 NaN 1 0 Median 0.88393 0.75069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81773 0.88684 NaN 1 0 Median NaN NaN NaN 0 0 Median 203710000 113600000 90112000 97167000 54401000 42766000 7650500 3941600 3708900 0 0 0 0 0 0 98892000 55255000 43637000 0 0 0 33817 1342 35558 177560;177561;177562 179484;179485;179486;179487 179484 4 TNSTFNQVVLK YLRLLVKLYRFLARRTNSTFNQVVLKRLFM LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R T N L K R 0 0 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 11 0 1249.6667 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0 J3QQ67 41 51 RPL18 60S ribosomal protein L18 yes no 2 1.9725E-05 105.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 2 2 2 1 1.2511 1.1404 73.351 13 Median 1.2511 1.1674 11.057 3 1 Median 0.97332 0.80964 37.445 4 0 Median 3.9879 3.743 NaN 1 1 Median 3.7459 3.3664 139.5 2 1 Median 1.1306 1.1416 5.7817 2 0 Median 1.3499 1.1101 NaN 1 0 Median 425930000 157140000 268790000 135490000 64927000 70565000 21102000 7539600 13562000 97498000 15651000 81847000 29726000 4118100 25608000 108790000 50712000 58082000 33316000 14191000 19125000 33818 1342 35559 177563;177564;177565;177566;177567;177568;177569;177570;177571;177572;177573;177574;177575;177576;177577 179488;179489;179490;179491;179492;179493;179494;179495;179496;179497;179498;179499;179500;179501;179502;179503 179497 16 TNSTFNQVVLKR YLRLLVKLYRFLARRTNSTFNQVVLKRLFM ARRTNSTFNQVVLKRLFMSRTNRPPLSLSR R T N K R L 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 J3QQ67;Q07020;G3V203;H0YHA7;F8VYV2;A0A075B7A0 J3QQ67 41 52 RPL18 60S ribosomal protein L18 yes no 2;3 3.2963E-09 171.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 2 3 6 3 1.2392 1.1947 28.657 23 Median 1.1648 1.208 14.713 6 1 Median 1.2867 1.182 3.6553 3 0 Median 1.0779 1.1374 3.4928 2 0 Median 1.2948 1.1462 8.7846 3 0 Median 1.1871 1.2986 54.119 6 0 Median 1.4346 1.1476 8.0049 3 0 Median 546110000 248370000 297740000 200910000 91914000 108990000 48892000 22209000 26683000 58405000 27957000 30448000 8658700 3896000 4762700 224440000 100430000 124010000 4812400 1963100 2849400 33819 1342 35560 177578;177579;177580;177581;177582;177583;177584;177585;177586;177587;177588;177589;177590;177591;177592;177593;177594;177595;177596;177597;177598;177599;177600 179504;179505;179506;179507;179508;179509;179510;179511;179512;179513;179514;179515;179516;179517;179518;179519;179520;179521;179522;179523;179524;179525;179526;179527;179528 179514 25 TNTLAVTGGEDDKAFVWR ALHSASVFCVSLDPKTNTLAVTGGEDDKAF LAVTGGEDDKAFVWRLSDGELLFECAGHKD K T N W R L 2 1 1 2 0 0 1 2 0 0 1 1 0 1 0 0 3 1 0 2 0 0 18 1 1978.9749 C9JG97;C9JEH3;Q13685;C9JTS3 C9JG97 84 101 AAMP Angio-associated migratory cell protein yes no 3 0.00049195 35.64 By MS/MS By matching By matching By matching 1 1 1 1 1.3916 1.3738 23.022 4 Linear 1.3641 1.3628 NaN 1 0 Median 1.137 1.0355 NaN 1 0 Median 1.2602 1.2746 NaN 1 0 Median 0.8437 0.81796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8385100 3799700 4585300 4092000 1577900 2514100 496620 246170 250450 3304000 1773000 1531000 492420 202660 289760 0 0 0 0 0 0 33820 692 35561 177601;177602;177603;177604 179529 179529 1 TNTPVKEDWNVR PELLTHSTTEVTQPRTNTPVKEDWNVRITK QPRTNTPVKEDWNVRITKLRKQVEEIFNLK R T N V R I 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 0 2 1 0 2 0 0 12 1 1457.7263 P78347;A0A494C1K3;A0A494C0Q7 P78347 556 567 GTF2I General transcription factor II-I yes no 2;3 2.3431E-05 101.38 By matching By MS/MS By MS/MS By MS/MS 1 5 2 1 0.75292 0.75795 26.705 8 Median NaN NaN NaN 0 0 Median 0.82302 0.82639 NaN 1 0 Median 0.62967 0.71462 24.469 4 1 Median 0.7411 0.70708 54.984 2 0 Median NaN NaN NaN 0 0 Median 0.8436 0.73441 NaN 1 0 Median 56329000 33658000 22671000 0 0 0 721480 419730 301750 48763000 29400000 19362000 4942500 2959500 1982900 0 0 0 1902200 878300 1023900 33821 2642 35562 177605;177606;177607;177608;177609;177610;177611;177612;177613 179530;179531;179532;179533;179534;179535;179536;179537;179538;179539;179540 179532 11 TNTQPFDLQVYHPSR KANKWTGHNVTVVQRTNTQPFDLQVYHPSR TNTQPFDLQVYHPSRQPMAPNPCEANGGQG R T N S R Q 0 1 1 1 0 2 0 0 1 0 1 0 0 1 2 1 2 0 1 1 0 0 15 0 1801.8747 Q07954 Q07954 1518 1532 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 7.5454E-10 100.45 By MS/MS 1 0.47766 0.46483 NaN 1 Median 0.47766 0.46483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19668000 13480000 6188400 19668000 13480000 6188400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33822 2733 35563 177614 179541;179542 179542 2 TNVIQSLLAR QEGVFRSNCMDCLDRTNVIQSLLARRSLQA DCLDRTNVIQSLLARRSLQAQLQRLGVLHV R T N A R R 1 1 1 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1113.6506 Q9NTJ5;E9PGZ4;C9JV50 Q9NTJ5 396 405 SACM1L Phosphatidylinositide phosphatase SAC1 yes no 2 0.00036818 87.476 By MS/MS By matching 3 1 1.2913 1.2841 45.174 4 Median 1.315 1.9295 46.962 3 0 Plateau 1.1975 1.0445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6629200 2094600 4534600 5756100 1733800 4022200 873110 360720 512390 0 0 0 0 0 0 0 0 0 0 0 0 33823 4109 35564 177615;177616;177617;177618 179543;179544;179545 179543 3 TNVLGHLQQGGAPTPFDR YNLYSSEGKGVFDCRTNVLGHLQQGGAPTP LGHLQQGGAPTPFDRNYGTKLGVKAMLWLS R T N D R N 1 1 1 1 0 2 0 3 1 0 2 0 0 1 2 0 2 0 0 1 0 0 18 0 1906.965 P17858 P17858 655 672 PFKL ATP-dependent 6-phosphofructokinase, liver type yes yes 2;3 5.0162E-07 82.765 By MS/MS By MS/MS By matching 8 3 1 0.78402 0.756 24.439 12 Median 0.75498 0.71139 29.694 8 0 Median 0.99966 0.86627 10.74 3 0 Median 0.71847 0.78065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108380000 61622000 46760000 91360000 51791000 39570000 9374900 5018700 4356200 7647200 4812800 2834400 0 0 0 0 0 0 0 0 0 33824 2047 35565 177619;177620;177621;177622;177623;177624;177625;177626;177627;177628;177629;177630 179546;179547;179548;179549;179550;179551;179552;179553 179547 8 TNVNGGAIALGHPLGGSGSR QYLAVERSLDLDISKTNVNGGAIALGHPLG GAIALGHPLGGSGSRITAHLVHELRRRGGK K T N S R I 2 1 2 0 0 0 0 6 1 1 2 0 0 0 1 2 1 0 0 1 0 0 20 0 1833.9446 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 338 357 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 3 2.8923E-07 50.883 By MS/MS By matching By matching 2 1 1 0.82579 0.75563 29.86 4 Median 0.7562 0.74489 30.546 2 0 Median 0.71755 0.61763 NaN 1 0 Median 1.0091 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24009000 14525000 9483200 14469000 9813300 4655800 2458100 1356700 1101400 7081400 3355400 3725900 0 0 0 0 0 0 0 0 0 33825 220 35566 177631;177632;177633;177634 179554;179555 179554 2 TNVNVFSELSAPR QDVIAIEYIVLTMNRTNVNVFSELSAPRRN NRTNVNVFSELSAPRRNEDFVLLLTYVLFL R T N P R R 1 1 2 0 0 0 1 0 0 0 1 0 0 1 1 2 1 0 0 2 0 0 13 0 1432.731 Q8NFJ5;F5GWG3;A0A3B3ITN8 Q8NFJ5 160 172 GPRC5A Retinoic acid-induced protein 3 yes no 2 2.3573E-06 108.56 By MS/MS By MS/MS By MS/MS 2 2 2 0.92438 0.87308 71.053 6 Median 0.51894 0.5306 135.6 2 1 Median 0.91232 0.76314 9.7444 2 0 Median 1.0685 1.1447 29.017 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30193000 18498000 11696000 10022000 7853800 2167800 9345700 4818300 4527400 10826000 5825600 5000500 0 0 0 0 0 0 0 0 0 33826 3439 35567 177635;177636;177637;177638;177639;177640 179556;179557;179558 179557 3 TNVVTMPTAHPR EDVIPATQCLTPGIRTNVVTMPTAHPRIAP GIRTNVVTMPTAHPRIAPKASMAGASSSKE R T N P R I 1 1 1 0 0 0 0 0 1 0 0 0 1 0 2 0 3 0 0 2 0 0 12 0 1322.6765 E7ETY2;A0A3B3IS06;Q13428 Q13428 1019 1030 TCOF1 Treacle protein no no 2;3 0.00016002 72.958 By matching By matching By MS/MS By MS/MS By matching 1 1 4 3 1 0.87052 0.85672 58.396 10 Median 1.076 1.0807 NaN 1 0 Median 1.3302 1.1133 NaN 1 0 Median 0.77511 0.84721 59.541 4 1 Median 0.94238 0.82794 11.582 3 0 Median 0.19837 0.20741 NaN 1 0 Median NaN NaN NaN 0 0 Median 35600000 20698000 14902000 1530700 727550 803190 1145300 511410 633870 27020000 15840000 11180000 4614100 2478900 2135200 1290000 1140100 149880 0 0 0 33827 2816;891 35568 177641;177642;177643;177644;177645;177646;177647;177648;177649;177650 179559;179560;179561;179562;179563;179564;179565;179566;179567;179568 179559 10 TNYNDRYDEIR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG EAIRTNYNDRYDEIRRHWGGNVLGPKSVAR R T N I R R 0 2 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 11 1 1457.6535 P62424;Q5T8U2 P62424 224 234 RPL7A 60S ribosomal protein L7a yes no 2;3 1.0701E-05 121.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 5 2 1.0407 1.0626 14.542 16 Median 1.0211 1.0993 7.7086 3 0 Median 1.0606 1.0298 8.0003 3 1 Plateau 0.94322 0.98448 NaN 1 0 Median 1.074 0.98171 22.639 2 0 Median 1.1074 1.201 18.976 5 0 Median 1.1155 0.98739 12.075 2 0 Median 139190000 65718000 73467000 29575000 14547000 15028000 56285000 26661000 29624000 9443700 4746500 4697100 13370000 6141400 7228800 18977000 8701600 10276000 11535000 4921100 6613500 33828 2589 35569 177651;177652;177653;177654;177655;177656;177657;177658;177659;177660;177661;177662;177663;177664;177665;177666;177667 179569;179570;179571;179572;179573;179574;179575;179576;179577;179578;179579;179580;179581;179582;179583;179584;179585;179586;179587;179588 179582 20 TNYNDRYDEIRR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG AIRTNYNDRYDEIRRHWGGNVLGPKSVARI R T N R R H 0 3 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 12 2 1613.7546 P62424;Q5T8U2 P62424 224 235 RPL7A 60S ribosomal protein L7a yes no 2;3;4 3.1799E-05 91.202 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 4 2 1 6 3 1.1759 1.2171 28.173 19 Median 1.0583 1.0234 10.244 3 0 Median 1.2411 1.1241 10.928 4 0 Median 1.4598 1.6812 24.555 2 0 Median 1.1961 1.1646 NaN 1 0 Median 1.1255 1.3887 34.178 6 0 Median 1.3283 1.3702 45.353 3 0 Median 187980000 85399000 102580000 39194000 18957000 20237000 66858000 29455000 37404000 6369700 2742900 3626800 13754000 5936000 7818000 48783000 22586000 26197000 13018000 5722900 7295300 33829 2589 35570 177668;177669;177670;177671;177672;177673;177674;177675;177676;177677;177678;177679;177680;177681;177682;177683;177684;177685;177686 179589;179590;179591;179592;179593;179594;179595;179596;179597;179598;179599;179600;179601 179596 13 TPAAAAAMNLASPR RTPAIPTAVNLADSRTPAAAAAMNLASPRT RTPAAAAAMNLASPRTAVAPSAVNLADPRT R T P P R T 6 1 1 0 0 0 0 0 0 0 1 0 1 0 2 1 1 0 0 0 0 0 14 0 1340.6871 Q9UQ35 Q9UQ35 2261 2274 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 1.7331E-11 178.71 By MS/MS By MS/MS By matching 2 4 1 0.72837 0.69297 31 6 Median 0.70809 0.69624 12.844 2 0 Median 0.69396 0.58837 22.311 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0783 1.2021 NaN 1 0 Median NaN NaN NaN 0 0 Median 89814000 49657000 40157000 39484000 21017000 18467000 42769000 25004000 17765000 0 0 0 0 0 0 7560700 3635400 3925300 0 0 0 33830 4359 35571 177687;177688;177689;177690;177691;177692;177693 179602;179603;179604;179605;179606;179607;179608 179603 7 TPAAIPATPVAVSQPIR TPASTLTKSGPGRWKTPAAIPATPVAVSQP AAIPATPVAVSQPIRTDLPPPPPPPPVHYA K T P I R T 4 1 0 0 0 1 0 0 0 2 0 0 0 0 4 1 2 0 0 2 0 0 17 0 1687.9621 J3KN01;P55196;Q5TIG5;A8MQ02 J3KN01 1352 1368 MLLT4 Afadin yes no 2 0.046744 21.631 By matching By MS/MS By matching By matching 1 1 1 1 0.5666 0.48336 28.007 4 Median 0.64248 0.63099 NaN 1 0 Median 0.56445 0.46933 NaN 1 0 Median 0.29121 0.32095 NaN 1 0 Median 0.56875 0.4978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9825100 6913500 2911600 3135700 1943400 1192200 1288300 844990 443310 5032600 3915400 1117200 368470 209620 158850 0 0 0 0 0 0 33831 1300 35572 177694;177695;177696;177697 179609 179609 1 TPAALAALSLTGSGTPPTAANYPSSSR PRTPTAPAVNLAGARTPAALAALSLTGSGT SGTPPTAANYPSSSRTPQAPASANLVGPRS R T P S R T 6 1 1 0 0 0 0 2 0 0 3 0 0 0 4 5 4 0 1 0 0 0 27 0 2558.2976 Q9UQ35 Q9UQ35 2302 2328 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 1.7656E-44 122.39 By MS/MS By matching 2 1 0.60312 0.58629 34.639 3 Median 0.67128 0.69874 24.814 2 0 Median NaN NaN NaN 0 0 Median 0.36977 0.41654 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29075000 16731000 12344000 27963000 15999000 11964000 0 0 0 1112100 732020 380080 0 0 0 0 0 0 0 0 0 33832 4359 35573 177698;177699;177700 179610;179611 179610 2 TPAEASSTGQTGPQSAL ESGPPPESMPKMPPRTPAEASSTGQTGPQS AEASSTGQTGPQSAL_______________ R T P A L - 3 0 0 0 0 2 1 2 0 0 1 0 0 0 2 3 3 0 0 0 0 0 17 0 1601.7533 Q9Y676;A0A0G2JIC6 Q9Y676 242 258 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 2 8.7579E-08 78.653 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8201400 0 0 8201400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33833 4480 35574 177701 179612 179612 1 TPAEIREEFER RGLEMEGWEVVERRRTPAEIREEFERLQRE ERRRTPAEIREEFERLQREREERRLQQRTN R T P E R L 1 2 0 0 0 0 4 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 11 1 1375.6732 Q9NVH1;Q5TH61;B1AK20 Q9NVH1 99 109 DNAJC11 DnaJ homolog subfamily C member 11 yes no 3 0.0001276 70.488 By MS/MS 2 1.1841 1.1872 13.882 2 Median 1.1841 1.1872 13.882 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8025700 4099200 3926500 8025700 4099200 3926500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33834 4130 35575 177702;177703 179613 179613 1 TPAFAESVTEGDVR FRTTAVCKDDLVTVKTPAFAESVTEGDVRW KTPAFAESVTEGDVRWEKAVGDTVAEDEVV K T P V R W 2 1 0 1 0 0 2 1 0 0 0 0 0 1 1 1 2 0 0 2 0 0 14 0 1477.7049 P36957;Q86SW4;H0YJF9;G3V5M3;G3V3F0 P36957 75 88 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 2 1.9483E-07 162.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1633 1.0025 21.67 5 Median 0.80741 0.77354 NaN 1 0 Median 1.1853 1.0025 NaN 1 0 Median 0.8023 0.78296 NaN 1 0 Median 1.4234 1.226 NaN 1 0 Median 1.1633 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median 64385000 31270000 33115000 10223000 5420300 4802700 5981300 2437000 3544300 29535000 15957000 13578000 12371000 4953600 7417300 6274700 2502000 3772700 0 0 0 33835 2265 35576 177704;177705;177706;177707;177708 179614;179615;179616;179617;179618;179619;179620;179621;179622 179621 9 TPAFSPFVR LKYISSCKRLRSDSRTPAFSPFVRVEKRDA LRSDSRTPAFSPFVRVEKRDAFTTICTVVN R T P V R V 1 1 0 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 1 0 0 9 0 1020.5393 A0A1W2PQJ7;Q7Z5J4 A0A1W2PQJ7 1480 1488 RAI1 Retinoic acid-induced protein 1 yes no 2 0.024906 37.727 By MS/MS 1 0.72289 0.75927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72289 0.75927 NaN 1 0 Median NaN NaN NaN 0 0 Median 2862300 1728300 1134000 0 0 0 0 0 0 0 0 0 0 0 0 2862300 1728300 1134000 0 0 0 33836 344 35577 177709 179623 179623 1 TPAILYTYSGLR PPPVRQEPSPKPNNKTPAILYTYSGLRNRR NNKTPAILYTYSGLRNRRAAVYVGSFSWWT K T P L R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 2 0 0 0 12 0 1353.7293 Q8N684;F5H669;F5H6M0;F5H047;J3QT54;C9J286;C9J323;C9JM38;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3 Q8N684 67 78 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes no 2 8.1141E-41 223.08 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 5 1 1 0.91468 0.87116 15.621 11 Median 0.72081 0.71784 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86886 0.85129 10.331 3 0 Median 1.1426 0.97914 17.533 5 0 Median 0.86881 0.87116 NaN 1 0 Median 1.0004 0.85898 NaN 1 0 Median 101900000 54231000 47669000 1951000 1145100 805830 0 0 0 86750000 46629000 40121000 8235600 3970100 4265500 4189200 2095400 2093800 773900 391180 382720 33837 3385 35578 177710;177711;177712;177713;177714;177715;177716;177717;177718;177719;177720 179624;179625;179626;179627;179628;179629;179630;179631;179632 179627 9 TPAIPFASYGLHHTSLLK LSSSPGGTSPSPPPRTPAIPFASYGLHHTS IPFASYGLHHTSLLKRHISHQTSVNADPAS R T P L K R 2 0 0 0 0 0 0 1 2 1 3 1 0 1 2 2 2 0 1 0 0 0 18 0 1952.052 Q9NXE4;H7C1Q6;H7C2J2;H7C2E2 Q9NXE4 260 277 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 4 0.03004 20.091 By MS/MS 2 0.64806 0.6911 35.284 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64806 0.6911 35.284 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6133000 3965000 2168000 0 0 0 0 0 0 6133000 3965000 2168000 0 0 0 0 0 0 0 0 0 33838 4162 35579 177721;177722 179633;179634;179635 179633 3 TPAIPTAVNLADSR IPAASAAAMNLASARTPAIPTAVNLADSRT RTPAIPTAVNLADSRTPAAAAAMNLASPRT R T P S R T 3 1 1 1 0 0 0 0 0 1 1 0 0 0 2 1 2 0 0 1 0 0 14 0 1424.7623 Q9UQ35 Q9UQ35 2247 2260 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 5.3519E-12 143.97 By MS/MS By MS/MS By MS/MS 3 2 2 0.68056 0.68056 14.938 7 Median 0.68684 0.68056 11.965 3 0 Median 0.64622 0.54948 15.222 2 1 Median 0.69111 0.73087 2.3107 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110100000 65385000 44719000 78995000 45934000 33061000 14553000 9671000 4882100 16556000 9779300 6776300 0 0 0 0 0 0 0 0 0 33839 4359 35580 177723;177724;177725;177726;177727;177728;177729 179636;179637;179638;179639;179640;179641;179642;179643 179641 8 TPAKVEDAADSATKPENLSSK GDKTLTPRKLSTRNRTPAKVEDAADSATKP DAADSATKPENLSSKTRGSIPTDVEVLPTE R T P S K T 4 0 1 2 0 0 2 0 0 0 1 3 0 0 2 3 2 0 0 1 0 0 21 2 2158.0754 P46013 P46013 401 421 MKI67 Antigen KI-67 yes yes 3;4 0.017826 17.148 By MS/MS 2 0.53236 0.66097 17.123 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53236 0.66097 17.123 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5190400 3553100 1637400 0 0 0 0 0 0 5190400 3553100 1637400 0 0 0 0 0 0 0 0 0 33840 2335 35581 177730;177731 179644;179645 179644 2 TPALISDYKEYHTDTTVK YKEQVLEPMLNGTDKTPALISDYKEYHTDT LISDYKEYHTDTTVKFVVKMTEEKLAQAEA K T P V K F 1 0 0 2 0 0 1 0 1 1 1 2 0 0 1 1 4 0 2 1 0 0 18 1 2081.0317 Q02880;E9PCY5 Q02880 971 988 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 3 6.5682E-09 96.666 By MS/MS By MS/MS By MS/MS 1 1 1 0.63153 0.7326 19.969 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63153 0.7326 NaN 1 0 Median 1.0062 0.94226 NaN 1 0 Median 0.59109 0.63516 NaN 1 0 Median NaN NaN NaN 0 0 Median 29329000 17739000 11590000 0 0 0 0 0 0 21176000 12727000 8449400 1654200 771070 883170 6498400 4241000 2257400 0 0 0 33841 2704 35582 177732;177733;177734 179646;179647;179648;179649 179647 4 TPALIVYGDQDPMGQTSFEHLK ICTDKINAANYASVKTPALIVYGDQDPMGQ GDQDPMGQTSFEHLKQLPNHRVLIMKGAGH K T P L K Q 1 0 0 2 0 2 1 2 1 1 2 1 1 1 2 1 2 0 1 1 0 0 22 0 2446.1839 Q96IU4;F8W9U3 Q96IU4 152 173 ABHD14B Alpha/beta hydrolase domain-containing protein 14B yes no 3 1.6279E-07 48.656 By MS/MS By matching 1 1 0.73822 0.65906 29.004 2 Median 0.57572 0.53685 NaN 1 0 Median 0.94658 0.80909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10728000 6116300 4611500 9995400 5763300 4232100 732410 353000 379410 0 0 0 0 0 0 0 0 0 0 0 0 33842 3679 35583 177735;177736 179650 179650 1 TPALVFEHVNNTDFK NIITLADIVKDPVSRTPALVFEHVNNTDFK TPALVFEHVNNTDFKQLYQTLTDYDIRFYM R T P F K Q 1 0 2 1 0 0 1 0 1 0 1 1 0 2 1 0 2 0 0 2 0 0 15 0 1730.8628 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1;A0A2R8YDY7 P68400 108 122 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 3.6654E-40 166.11 By MS/MS By matching By MS/MS By matching 2 1 4 1 1.0018 0.95346 28.008 8 Median 0.97746 0.90241 7.8828 2 0 Median 1.139 0.98228 NaN 1 0 Median 1.7404 1.796 40.004 4 2 Linear 1.1271 0.95277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 192230000 81588000 110640000 39149000 20110000 19039000 2150400 918470 1232000 148750000 59583000 89164000 2184300 976900 1207400 0 0 0 0 0 0 33843 394 35584 177737;177738;177739;177740;177741;177742;177743;177744 179651;179652;179653;179654;179655;179656;179657;179658 179658 8 TPALVFEYINNTDFK NIIKLIDTVKDPVSKTPALVFEYINNTDFK TPALVFEYINNTDFKQLYQILTDFDIRFYM K T P F K Q 1 0 2 1 0 0 1 0 0 1 1 1 0 2 1 0 2 0 1 1 0 0 15 0 1770.8829 P19784;H3BSA1;H3BNI9 P19784 109 123 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.039043 24.343 By matching By MS/MS By matching 1 2 1 1.0321 0.98277 17.804 4 Median 1.0646 1.0411 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87032 0.90636 28.619 2 0 Median 1.0807 0.92775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3760200 1786700 1973500 401260 176620 224640 0 0 0 3190500 1532300 1658200 168430 77774 90660 0 0 0 0 0 0 33844 2069 35585 177745;177746;177747;177748 179659 179659 1 TPALVNAAVTYSK ______________________________ EKTPALVNAAVTYSKPRLATFWYYAKVELV K T P S K P 3 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 2 0 1 2 0 0 13 0 1333.7242 O75964;E9PN17;A0A3B3ITX4;A0A3B3IRW3 O75964 12 24 ATP5L ATP synthase subunit g, mitochondrial yes no 2 9.7404E-07 99.522 By matching By MS/MS 1 1 1.3448 1.2115 38.205 2 Median 1.6053 1.5873 NaN 1 0 Median 1.1266 0.92469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6460300 3032400 3427800 1044400 597210 447170 5415900 2435200 2980700 0 0 0 0 0 0 0 0 0 0 0 0 33845 1713 35586 177749;177750 179660;179661 179660 2 TPALVNAAVTYSKPR ______________________________ TPALVNAAVTYSKPRLATFWYYAKVELVPP K T P P R L 3 1 1 0 0 0 0 0 0 0 1 1 0 0 2 1 2 0 1 2 0 0 15 1 1586.878 O75964;E9PN17;A0A3B3ITX4;A0A3B3IRW3 O75964 12 26 ATP5L ATP synthase subunit g, mitochondrial yes no 2;3 1.1024E-45 223.31 By MS/MS By MS/MS By matching 2 4 1 0.97153 0.87207 27.476 7 Median 0.74482 0.73037 8.6418 2 0 Median 1.0276 0.88893 29.059 4 0 Median 0.93164 1.1512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 305150000 159300000 145860000 191200000 105550000 85649000 112530000 53035000 59496000 1421800 710780 710970 0 0 0 0 0 0 0 0 0 33846 1713 35587 177751;177752;177753;177754;177755;177756;177757 179662;179663;179664;179665;179666;179667;179668;179669;179670;179671;179672;179673;179674;179675;179676;179677;179678;179679;179680;179681;179682;179683;179684;179685 179672 24 TPANEKVEIQK ESEDEIPQLVPIGKKTPANEKVEIQKHATG IGKKTPANEKVEIQKHATGKKSPAKSPNPS K T P Q K H 1 0 1 0 0 1 2 0 0 1 0 2 0 0 1 0 1 0 0 1 0 0 11 1 1255.6772 O76021;J3QSV6 O76021 375 385 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.0053248 36.284 By matching By MS/MS By MS/MS 1 4 2 0.89476 0.87476 14.562 7 Median NaN NaN NaN 0 0 Median 0.89287 0.84026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90952 0.96322 8.6915 4 0 Median 0.82645 0.74518 10.842 2 0 Median 10239000 5073800 5164900 0 0 0 1075400 442480 632920 0 0 0 0 0 0 7392600 3765600 3627000 1770800 865770 905000 33847 1716 35588 177758;177759;177760;177761;177762;177763;177764 179686;179687;179688 179688 3 TPAPATTTSHNPLANILSK PGTPTSPSNLTSGLKTPAPATTTSHNPLAN ATTTSHNPLANILSKVEITPESILSALSKT K T P S K V 3 0 2 0 0 0 0 0 1 1 2 1 0 0 3 2 4 0 0 0 0 0 19 0 1933.0269 Q5VT52 Q5VT52 495 513 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 3 0.049789 18.538 By MS/MS 1 0.46667 0.51579 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46667 0.51579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9934200 6550600 3383500 0 0 0 0 0 0 9934200 6550600 3383500 0 0 0 0 0 0 0 0 0 33848 3110 35589 177765 179689 179689 1 TPAQFDADELR ALTGHLEEVVLALLKTPAQFDADELRAAMK ALLKTPAQFDADELRAAMKGLGTDEDTLIE K T P L R A 2 1 0 2 0 1 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1261.5939 P04083;Q5T3N1 P04083 114 124 ANXA1 Annexin A1;Annexin yes no 2 2.5487E-06 160.36 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 1.0531 0.91756 17.271 9 Median 0.95918 0.93083 34.092 2 0 Median 1.0531 0.91756 7.8368 3 2 Median 1.0932 1.1215 7.1974 2 0 Median 1.0049 0.83745 5.1376 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 334450000 152590000 181860000 134210000 59038000 75167000 90992000 43654000 47337000 85311000 38341000 46970000 23940000 11552000 12388000 0 0 0 0 0 0 33849 1844 35590 177766;177767;177768;177769;177770;177771;177772;177773;177774 179690;179691;179692;179693;179694;179695;179696;179697;179698;179699;179700;179701 179700 12 TPAQSGAWDPNNPNTPSR TPHYGSQTPLHDGSRTPAQSGAWDPNNPNT QSGAWDPNNPNTPSRAEEEYEYAFDDEPTP R T P S R A 2 1 3 1 0 1 0 1 0 0 0 0 0 0 4 2 2 1 0 0 0 0 18 0 1908.8715 O00267 O00267 814 831 SUPT5H Transcription elongation factor SPT5 yes yes 2 1.3702E-05 60.628 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1832600 1832600 0 0 0 0 0 0 0 1832600 1832600 0 0 0 0 0 0 0 0 0 0 33850 1452 35591 177775 179702 179702 1 TPAQYDASELK ALSGHLETVILGLLKTPAQYDASELKASMK GLLKTPAQYDASELKASMKGLGTDEDSLIE K T P L K A 2 0 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 11 0 1221.5877 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YMW4 P07355 105 115 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 1.3601E-06 164.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 1 2 1.0054 0.89313 34.887 16 Median 0.95508 0.899 17.978 4 0 Median 1.0502 0.89431 45.185 5 1 Median 0.91217 0.87584 19.189 2 0 Median 1.0586 0.89692 4.7325 2 0 Median 0.9483 0.95064 NaN 1 0 Median 0.67758 0.56386 59.882 2 0 Median 695680000 333700000 361980000 145440000 69568000 75874000 145200000 67374000 77826000 140140000 68327000 71813000 226550000 109780000 116760000 22366000 10933000 11433000 15987000 7714900 8272500 33851 1885 35592 177776;177777;177778;177779;177780;177781;177782;177783;177784;177785;177786;177787;177788;177789;177790;177791 179703;179704;179705;179706;179707;179708;179709;179710;179711;179712;179713;179714;179715;179716;179717;179718;179719;179720;179721;179722;179723;179724;179725;179726;179727;179728;179729;179730;179731;179732;179733;179734;179735;179736 179727 34 TPAQYDASELKASMK ALSGHLETVILGLLKTPAQYDASELKASMK TPAQYDASELKASMKGLGTDEDSLIEIICS K T P M K G 3 0 0 1 0 1 1 0 0 0 1 2 1 0 1 2 1 0 1 0 0 0 15 1 1638.7923 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YKS4;H0YNP5;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7 P07355 105 119 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 3 0.0014262 36.029 By MS/MS By MS/MS 1 1 2.8781 2.6112 143.13 2 Median 7.7718 7.1841 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0659 0.94909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41365000 4911200 36454000 36861000 2284500 34576000 0 0 0 0 0 0 4504700 2626700 1878000 0 0 0 0 0 0 33852 1885 35593 177792;177793 179737;179738 179738 2 TPASINATPANINLADLTR DPVPGITPSSSSRTRTPASINATPANINLA INATPANINLADLTRAVNALPQNMTSQMFS R T P T R A 4 1 3 1 0 0 0 0 0 2 2 0 0 0 2 1 3 0 0 0 0 0 19 0 1952.0327 Q7KZ85 Q7KZ85 1532 1550 SUPT6H Transcription elongation factor SPT6 yes yes 2 9.6744E-21 115.8 By MS/MS By MS/MS 1 1 0.79488 0.85492 15.177 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86338 0.95177 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.73181 0.76793 NaN 1 0 Median NaN NaN NaN 0 0 Median 7353500 4093700 3259800 0 0 0 0 0 0 4960000 2778000 2182000 0 0 0 2393500 1315700 1077800 0 0 0 33853 3213 35594 177794;177795 179739;179740;179741 179739 3 TPASPVVHIR AGGGGGGENYDDPHKTPASPVVHIRGLIDG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T P I R G 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 2 0 0 10 0 1075.6138 A0A3B3ITJ4;M0QXS5;M0R1W6;M0QYL7;P14866 P14866 98 107 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 1.7465E-10 175.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 4 0.77064 0.6947 9.4655 8 Median NaN NaN NaN 0 0 Median 0.89572 0.77457 NaN 1 0 Median 0.67336 0.68272 NaN 1 0 Median 0.9003 0.75661 NaN 1 0 Median 0.71102 0.70689 14.027 3 2 Median 0.84819 0.67242 0.32803 2 0 Median 48042000 26517000 21526000 0 0 0 13797000 7166500 6630700 7958200 4760600 3197600 11252000 5717500 5534700 10714000 6400200 4313900 4320400 2471600 1848800 33854 2011;436 35595 177796;177797;177798;177799;177800;177801;177802;177803;177804;177805 179742;179743;179744;179745;179746;179747;179748;179749;179750;179751;179752;179753;179754;179755 179751 14 TPASTPVSGTPQASPMIER IKVPEKIMNMIEEIKTPASTPVSGTPQASP TPVSGTPQASPMIERSNVVRKDYDTLSKCS K T P E R S 2 1 0 0 0 1 1 1 0 1 0 0 1 0 4 3 3 0 0 1 0 0 19 0 1925.9517 Q9UHR4 Q9UHR4 248 266 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 1.0834E-24 125.61 By MS/MS By MS/MS 1 1 0.56592 0.5234 12.07 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46934 0.48059 NaN 1 1 Median 0.68238 0.57004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8245100 5699400 2545700 0 0 0 0 0 0 6055700 4500300 1555400 2189400 1199200 990250 0 0 0 0 0 0 33855 4281 35596 177806;177807 179756;179757 179756 2 TPATAPVPAR SPSVPKRPKLPAPTRTPATAPVPARAQGAV PAPTRTPATAPVPARAQGAVTGKPRGEGTE R T P A R A 3 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 10 0 979.54508 F5H8D7;P18887 F5H8D7 250 259 XRCC1 DNA repair protein XRCC1 yes no 2 0.00034691 84.568 By MS/MS By MS/MS By MS/MS 1 1 1 0.62855 0.59504 0.50552 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57403 0.59717 NaN 1 0 Median 0.68825 0.59292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7197900 4374300 2823500 0 0 0 0 0 0 5760900 3551200 2209700 1437000 823100 613860 0 0 0 0 0 0 33856 1047 35597 177808;177809;177810 179758;179759;179760;179761;179762 179761 5 TPAYIPIR SNFWCGMTSQGYYKRTPAYIPIRKRDRRGC SQGYYKRTPAYIPIRKRDRRGCFAVPMVHS R T P I R K 1 1 0 0 0 0 0 0 0 2 0 0 0 0 2 0 1 0 1 0 0 0 8 0 929.53345 Q8NBJ5;M0QYH0 Q8NBJ5 214 221 COLGALT1 Procollagen galactosyltransferase 1 yes no 2 0.021359 49.59 By MS/MS By MS/MS 1 1 0.99944 0.95681 6.3074 2 Median NaN NaN NaN 0 0 Median 1.0574 0.91507 NaN 1 1 Median 0.94468 1.0005 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9289000 4217800 5071200 0 0 0 5982500 2660600 3321900 3306500 1557200 1749300 0 0 0 0 0 0 0 0 0 33857 3404 35598 177811;177812 179763;179764 179763 2 TPCEEILVK KAGNNMLLVGVHGPRTPCEEILVKHVGSRL GVHGPRTPCEEILVKHVGSRLYSVSYLLKD R T P V K H 0 0 0 0 1 0 2 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1087.5583 P21333;Q60FE5;A0A087WWY3 P21333 2599 2607 FLNA Filamin-A no no 2 1.173E-05 156.51 By MS/MS By matching By matching 2 1 1 0.83952 0.75772 20.929 4 Median NaN NaN NaN 0 0 Median 0.82626 0.73715 5.4405 2 0 Median 1.0385 1.1209 NaN 1 0 Median 0.82446 0.74947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79382000 42599000 36783000 0 0 0 73850000 40016000 33834000 4148900 1881300 2267600 1382700 701270 681420 0 0 0 0 0 0 33858 2088;3120 35599 177813;177814;177815;177816 179765;179766;179767;179768 179766 4 TPCEEVYVK KAGTNMMMVGVHGPKTPCEEVYVKHMGNRV GVHGPKTPCEEVYVKHMGNRVYNVTYTVKE K T P V K H 0 0 0 0 1 0 2 0 0 0 0 1 0 0 1 0 1 0 1 2 0 0 9 0 1123.522 Q14315 Q14315 2677 2685 FLNC Filamin-C yes yes 2 0.00087364 93.143 By MS/MS 1 1.466 1.2838 NaN 1 Median NaN NaN NaN 0 0 Median 1.466 1.2838 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6539500 1964700 4574800 0 0 0 6539500 1964700 4574800 0 0 0 0 0 0 0 0 0 0 0 0 33859 2871 35600 177817 179769 179769 1 TPDGQGLSTYK VSGETVVFQGGALGKTPDGQGLSTYKELCS ALGKTPDGQGLSTYKELCSLASDLSQPDLV K T P Y K E 0 0 0 1 0 1 0 2 0 0 1 1 0 0 1 1 2 0 1 0 0 0 11 0 1165.5615 Q5VYK3;J3KN16 Q5VYK3 1057 1067 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0012806 59.908 By MS/MS 1 1.2261 1.0886 NaN 1 Median NaN NaN NaN 0 0 Median 1.2261 1.0886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2752000 1113800 1638200 0 0 0 2752000 1113800 1638200 0 0 0 0 0 0 0 0 0 0 0 0 33860 3116 35601 177818 179770;179771 179770 2 TPDGTENGDFLALDLGGTNFR HNNAVVKMLPSFVRRTPDGTENGDFLALDL NGDFLALDLGGTNFRVLLVKIRSGKKRTVE R T P F R V 1 1 2 3 0 0 1 4 0 0 3 0 0 2 1 0 3 0 0 0 0 0 21 0 2209.0287 P19367 P19367 519 539 HK1 Hexokinase-1 yes yes 2 7.263E-05 38.366 By MS/MS By matching By matching 1 1 1 0.87785 0.88142 31.48 3 Median 0.87785 0.88142 NaN 1 0 Median 1.1878 1.0804 NaN 1 0 Median 0.52229 0.5825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3085300 1553700 1531600 1255600 636910 618650 771190 334570 436630 1058600 582220 476360 0 0 0 0 0 0 0 0 0 33861 2064 35602 177819;177820;177821 179772;179773 179772 2 TPDKVNHAVLAVGYGEK MMYRTGIYSSTSCHKTPDKVNHAVLAVGYG DKVNHAVLAVGYGEKNGIPYWIVKNSWGPQ K T P E K N 2 0 1 1 0 0 1 2 1 0 1 2 0 0 1 0 1 0 1 3 0 0 17 1 1796.9421 P09668;A0A087X0D5 P09668 275 291 CTSH Pro-cathepsin H;Cathepsin H mini chain;Cathepsin H;Cathepsin H heavy chain;Cathepsin H light chain yes no 3 9.2453E-06 54.974 By matching By MS/MS 1 1 0.92323 0.8908 49.242 2 Median 0.61824 0.62887 NaN 1 0 Median 1.3787 1.2618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10258000 5963900 4293900 7737500 4828400 2909000 2520400 1135500 1384900 0 0 0 0 0 0 0 0 0 0 0 0 33862 103 35603 177822;177823 179774;179775 179774 2 TPDVFKAPLTPR DSPSSGTHLGGLELKTPDVFKAPLTPRASQ ELKTPDVFKAPLTPRASQVEPQSPGLGLRP K T P P R A 1 1 0 1 0 0 0 0 0 0 1 1 0 1 3 0 2 0 0 1 0 0 12 1 1340.7452 O14686 O14686 2323 2334 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.00044713 53.448 By MS/MS 2 0.46464 0.53532 47.626 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46464 0.53532 47.626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7123100 4459900 2663200 0 0 0 0 0 0 7123100 4459900 2663200 0 0 0 0 0 0 0 0 0 33863 1490 35604 177824;177825 179776 179776 1 TPDVLKK KDAIHFYNKSLAEHRTPDVLKKCQQAEKIL NKSLAEHRTPDVLKKCQQAEKILKEQERLA R T P K K C 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 7 1 799.48035 P31948 P31948 332 338 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0034806 118.69 By MS/MS By MS/MS 1 2 1.0961 1.0351 2.4156 3 Median 1.0999 1.0422 NaN 1 0 Median 1.081 1.0156 2.6846 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10625000 4996800 5628600 3377400 1632500 1744900 7248000 3364200 3883800 0 0 0 0 0 0 0 0 0 0 0 0 33864 2212 35605 177826;177827;177828 179777;179778;179779;179780;179781 179781 5 TPEDGDYSYEIIEK SDSGYSYETIGKTTKTPEDGDYSYEIIEKT KTPEDGDYSYEIIEKTTRTPEEGGYSYDIS K T P E K T 0 0 0 2 0 0 3 1 0 2 0 1 0 0 1 1 1 0 2 0 0 0 14 0 1657.7359 P46821 P46821 1932 1945 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 5.3945E-07 125.97 By matching By MS/MS By matching 1 1 2 1.0049 1.0105 28.368 4 Median NaN NaN NaN 0 0 Median 0.65872 0.57992 NaN 1 0 Median 0.97708 1.0433 NaN 1 0 Median 1.1089 1.0105 2.2175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20448000 9886200 10562000 0 0 0 905380 537940 367440 17183000 8224600 8958200 2359600 1123700 1235900 0 0 0 0 0 0 33865 2347 35606 177829;177830;177831;177832 179782;179783 179783 2 TPEEAALFK ADELPKPEQLAIRFKTPEEAALFKCKFEEA LAIRFKTPEEAALFKCKFEEAQSILKAPGT K T P F K C 2 0 0 0 0 0 2 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 9 0 1004.5179 P49792 P49792 1287 1295 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0015928 79.809 By matching By MS/MS 1 1 0.96757 0.84968 7.8793 2 Median 1.118 0.80363 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83738 0.89836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7991000 4226700 3764300 1058300 516350 541980 0 0 0 6932600 3710300 3222300 0 0 0 0 0 0 0 0 0 33866 2401 35607 177833;177834 179784 179784 1 TPEEGGYSYDISEK EDGDYSYEIIEKTTRTPEEGGYSYDISEKT RTPEEGGYSYDISEKTTSPPEVSGYSYEKT R T P E K T 0 0 0 1 0 0 3 2 0 1 0 1 0 0 1 2 1 0 2 0 0 0 14 0 1573.6784 P46821 P46821 1949 1962 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 7.077E-07 130.56 By matching By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0118 0.97851 19.713 5 Median 0.90663 0.90179 NaN 1 0 Median 1.1212 0.97851 NaN 1 0 Median 1.0118 1.0812 NaN 1 0 Median 1.0648 1.0575 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79002 0.66452 NaN 1 0 Median 31702000 16248000 15454000 5278800 3128900 2149900 2803800 1450200 1353600 13402000 6755700 6646500 9938800 4755300 5183500 0 0 0 278870 158450 120420 33867 2347 35608 177835;177836;177837;177838;177839 179785;179786 179785 2 TPEELLR ______________________________ DLLFGRRKTPEELLRQNQRALNRAMRELDR K T P L R Q 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 7 0 856.46543 O43633;M0R1L7;M0QXX8 O43633 10 16 CHMP2A Charged multivesicular body protein 2a yes no 2 0.012264 78.616 By MS/MS 1 1.1689 1.123 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1689 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13308000 6273100 7035000 0 0 0 0 0 0 13308000 6273100 7035000 0 0 0 0 0 0 0 0 0 33868 1579 35609 177840 179787 179787 1 TPEEYPESAK IYLNIPNKGHVLLHRTPEEYPESAKVYEKL VLLHRTPEEYPESAKVYEKLKDHMLIPVSM R T P A K V 1 0 0 0 0 0 3 0 0 0 0 1 0 0 2 1 1 0 1 0 0 0 10 0 1149.519 O94760;B4DYP1 O94760 238 247 DDAH1 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 yes no 2 0.00066973 96.331 By MS/MS By MS/MS 1 1 0.74132 0.66238 0.28825 2 Median 0.69777 0.66103 NaN 1 0 Median 0.7876 0.66373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7780100 4498900 3281200 5782300 3391200 2391100 1997800 1107700 890100 0 0 0 0 0 0 0 0 0 0 0 0 33869 1722 35610 177841;177842 179788;179789;179790;179791 179791 4 TPEILTVNSIGQLK DNADSSTLHAVTFLRTPEILTVNSIGQLKI RTPEILTVNSIGQLKIWDFRQQGNEPSQIL R T P L K I 0 0 1 0 0 1 1 1 0 2 2 1 0 0 1 1 2 0 0 1 0 0 14 0 1511.8559 Q8NFH3 Q8NFH3 183 196 NUP43 Nucleoporin Nup43 yes yes 2;3 1.1205E-08 118.28 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 5 3 2 1 1.0098 0.92505 6.7975 13 Median 1.035 0.96064 NaN 1 0 Median 1.0674 0.91958 NaN 1 0 Median 0.90389 0.90832 4.0068 5 2 Median 1.1555 0.97067 6.4062 3 0 Median 0.82075 0.82669 3.8816 2 1 Median 1.1489 0.96425 NaN 1 0 Median 159380000 81477000 77904000 11109000 5366600 5742600 2946600 1434800 1511800 131210000 67737000 63473000 6840700 3162200 3678500 6442900 3353000 3089900 831560 423210 408350 33870 3435 35611 177843;177844;177845;177846;177847;177848;177849;177850;177851;177852;177853;177854;177855 179792;179793;179794;179795;179796;179797;179798;179799;179800;179801 179795 10 TPEITVSIIK SKALDRVLDPTCTIKTPEITVSIIKELNRR TCTIKTPEITVSIIKELNRRGVLANALAGR K T P I K E 0 0 0 0 0 0 1 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 10 0 1099.6489 Q8TED0;H0Y8P4 Q8TED0 389 398 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.022796 36.334 By matching By matching By MS/MS By matching 1 1 1 2 1.2198 1.0524 22.698 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75924 0.78111 NaN 1 0 Median 1.665 1.4521 NaN 1 0 Median 1.105 1.0524 NaN 1 0 Median 1.3381 1.1176 10.246 2 0 Median 8800900 4690400 4110500 0 0 0 0 0 0 2670500 1725700 944730 556070 214340 341720 4747700 2402100 2345700 826610 348280 478330 33871 1163 35612 177856;177857;177858;177859;177860 179802 179802 1 TPEIYLAYR RRALPEFFNGKNKSKTPEIYLAYRNFMIDT GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL K T P Y R N 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 2 0 0 0 9 0 1124.5866 Q8TAQ2;F8VXC8;Q92922 Q8TAQ2 458 466 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.00081745 96.253 By matching By MS/MS By MS/MS By MS/MS 1 1 3 1 1.0961 0.94829 19.331 6 Median NaN NaN NaN 0 0 Median 1.2656 1.0914 NaN 1 0 Median 0.75808 0.83313 NaN 1 0 Median 1.0977 0.96458 13.39 3 0 Median 0.66417 0.69376 NaN 1 0 Median NaN NaN NaN 0 0 Median 58176000 30866000 27311000 0 0 0 2178200 717400 1460800 37627000 21241000 16386000 13134000 6408300 6725700 5237500 2499500 2738000 0 0 0 33872 3455;3567 35613 177861;177862;177863;177864;177865;177866 179803;179804;179805;179806;179807;179808;179809;179810 179803 8 TPELAEEFK SDGDAKLEQLAAKFKTPELAEEFKQKFEEC LAAKFKTPELAEEFKQKFEECQRLLLDIPL K T P F K Q 1 0 0 0 0 0 3 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 9 0 1062.5233 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2128 2136 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 2 0.00088543 92.491 By matching By MS/MS By MS/MS 1 1 1 0.95351 0.948 3.3362 3 Median NaN NaN NaN 0 0 Median 1.118 0.97926 NaN 1 0 Median 0.88434 0.948 NaN 1 0 Median 0.95351 0.91606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11368000 5941100 5427300 0 0 0 1904200 1030200 873990 7515000 3904900 3610100 1949200 1006000 943250 0 0 0 0 0 0 33873 2401;525;3762 35614 177867;177868;177869 179811;179812;179813;179814 179812 4 TPELAEEFKQK SDGDAKLEQLAAKFKTPELAEEFKQKFEEC AKFKTPELAEEFKQKFEECQRLLLDIPLQT K T P Q K F 1 0 0 0 0 1 3 0 0 0 1 2 0 1 1 0 1 0 0 0 0 0 11 1 1318.6769 P49792;F8VYC4;A0A286YES2;A0A1W2PNU4;P0DJD0;P0DJD1;J3KNE0;A6NKT7;Q7Z3J3;Q99666;J3KQ37;O14715 P49792 2128 2138 RANBP2;RGPD1;RGPD2;RGPD3;RGPD4;RGPD5;RGPD8 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8 no no 3 0.0016199 46.796 By MS/MS 1 0.764 0.86788 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.764 0.86788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4072700 2209900 1862800 0 0 0 0 0 0 4072700 2209900 1862800 0 0 0 0 0 0 0 0 0 33874 2401;525;3762 35615 177870 179815;179816 179815 2 TPELNLDQFHDK NGIECGGAYVKLLSKTPELNLDQFHDKTPY LSKTPELNLDQFHDKTPYTIMFGPDKCGED K T P D K T 0 0 1 2 0 1 1 0 1 0 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1455.6994 P27824;H0Y9Q7;D6RGY2;D6RFL1;H0Y9H1 P27824 171 182 CANX Calnexin yes no 2;3 1.2239E-06 103.43 By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 1.0842 0.97659 14.304 9 Median 0.99341 0.87254 9.5897 3 1 Median 1.112 0.97246 1.5886 3 0 Median 1.0076 1.0545 NaN 1 0 Median 1.3438 1.1664 22.393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91792000 44750000 47042000 51349000 25344000 26006000 34018000 16420000 17598000 5747100 2693300 3053800 677720 292710 385010 0 0 0 0 0 0 33875 2158 35616 177871;177872;177873;177874;177875;177876;177877;177878;177879 179817;179818;179819;179820;179821;179822 179818 6 TPELNLDQFHDKTPYTIMFGPDK NGIECGGAYVKLLSKTPELNLDQFHDKTPY FHDKTPYTIMFGPDKCGEDYKLHFIFRHKN K T P D K C 0 0 1 3 0 1 1 1 1 1 2 2 1 2 3 0 3 0 1 0 0 0 23 1 2706.3 P27824;H0Y9Q7;D6RGY2;D6RFL1;H0Y9H1 P27824 171 193 CANX Calnexin yes no 4 0.010871 19.21 By MS/MS 1 0.63847 0.66077 NaN 1 Median 0.63847 0.66077 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1737100 990240 746850 1737100 990240 746850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33876 2158 35617 177880 179823 179823 1 TPEMIIQKPK ATGGLEGKMKGTKVKTPEMIIQKPKISMQD GTKVKTPEMIIQKPKISMQDVDLSLGSPKL K T P P K I 0 0 0 0 0 1 1 0 0 2 0 2 1 0 2 0 1 0 0 0 0 0 10 1 1183.6635 Q09666 Q09666 490 499 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0017938 80.438 By MS/MS By MS/MS By MS/MS 1 1 1 0.74266 0.79809 25.673 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84186 0.95696 NaN 1 0 Median 0.65515 0.6656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4762600 2261300 2501300 1047500 0 1047500 0 0 0 1337600 717440 620170 2377600 1543900 833700 0 0 0 0 0 0 33877 2749 35618 177881;177882;177883 179824;179825;179826 179825 3 TPEPVVPTAPELQPSTSTDQPVTSEPTSQVTR TSQATRSRTNRSSVKTPEPVVPTAPELQPS TDQPVTSEPTSQVTRGRKSRSSVKTPETVV K T P T R G 1 1 0 1 0 3 3 0 0 0 1 0 0 0 7 4 7 0 0 4 0 0 32 0 3375.6682 Q14676;H0Y6Z8 Q14676 1157 1188 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3 7.2752E-39 98.839 By MS/MS By matching By MS/MS 3 2 1 0.35201 0.38671 37.837 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27697 0.30192 28.718 3 2 Median 0.65378 0.63754 1.2405 2 0 Median 0.29521 0.31018 NaN 1 0 Median NaN NaN NaN 0 0 Median 54364000 43607000 10756000 0 0 0 0 0 0 49015000 39988000 9027400 1713500 839470 874050 3634900 2780100 854840 0 0 0 33878 2887 35619 177884;177885;177886;177887;177888;177889 179827;179828;179829;179830 179828 4 TPEPVVPTAPEPHPTTSTDQPVTPK TSRATRCRTNRSSVKTPEPVVPTAPEPHPT EPHPTTSTDQPVTPKLTSRATRRKTNRSSV K T P P K L 1 0 0 1 0 1 2 0 1 0 0 1 0 0 8 1 6 0 0 3 0 0 25 0 2622.3177 Q14676 Q14676 1608 1632 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 4.7647E-39 107.47 By MS/MS By MS/MS By matching 3 4 1 0.41424 0.3568 26.702 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.25097 0.26777 43.729 3 1 Median 0.41718 0.36484 18.043 4 2 Median NaN NaN NaN 0 0 Median 0.46843 0.38715 NaN 1 0 Median 193410000 154090000 39314000 0 0 0 0 0 0 167800000 135770000 32021000 24115000 17250000 6864700 0 0 0 1496900 1068500 428430 33879 2887 35620 177890;177891;177892;177893;177894;177895;177896;177897 179831;179832;179833;179834;179835;179836;179837;179838 179836 8 TPEQVAEEEYLLQELR HERRRKEQLERLYNRTPEQVAEEEYLLQEL PEQVAEEEYLLQELRKIEARKKEREKRSQD R T P L R K 1 1 0 0 0 2 5 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 16 0 1945.9633 Q9NPF5;Q5TG40;Q5TG39 Q9NPF5 237 252 DMAP1 DNA methyltransferase 1-associated protein 1 yes no 2;3 8.5833E-09 123.64 By MS/MS By matching 2 1 0.79104 0.81975 17.536 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76141 0.77978 7.0681 2 0 Median 1.1799 1.0433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12705000 6855600 5849700 0 0 0 0 0 0 12631000 6829800 5801100 74377 25784 48593 0 0 0 0 0 0 33880 4050 35621 177898;177899;177900 179839;179840;179841;179842 179841 4 TPESIVPIAPELQPSTSR TSRATRGRTNRSSVKTPESIVPIAPELQPS SIVPIAPELQPSTSRNQLVTPEPTSRATRC K T P S R N 1 1 0 0 0 1 2 0 0 2 1 0 0 0 4 3 2 0 0 1 0 0 18 0 1921.0157 Q14676 Q14676 1567 1584 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 7.5251E-20 180.2 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 0.53179 0.5571 11.129 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51109 0.5571 8.7239 3 0 Median 0.64309 0.56285 14.286 2 0 Median 0.43416 0.45379 NaN 1 0 Median 0.69422 0.57903 NaN 1 0 Median 58873000 38808000 20065000 0 0 0 0 0 0 51599000 34065000 17534000 1671400 957520 713840 5046900 3465500 1581400 556010 319820 236190 33881 2887 35622 177901;177902;177903;177904;177905;177906;177907 179843;179844;179845;179846;179847;179848;179849;179850;179851;179852;179853;179854;179855 179846 13 TPESKPTILVK NMGWADAMAKVLNKKTPESKPTILVKNKKL LNKKTPESKPTILVKNKKLEKEKEKLKQER K T P V K N 0 0 0 0 0 0 1 0 0 1 1 2 0 0 2 1 2 0 0 1 0 0 11 1 1211.7125 Q9Y3B9 Q9Y3B9 104 114 RRP15 RRP15-like protein yes yes 3 0.032424 22.232 By MS/MS By matching 2 1 0.93365 0.98289 40.746 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2049 1.271 36.355 2 0 Median 0.8609 0.7351 NaN 1 0 Median 6178700 2739700 3439000 0 0 0 0 0 0 0 0 0 0 0 0 5484400 2393800 3090600 694300 345890 348410 33882 4417 35623 177908;177909;177910 179856;179857 179857 2 TPESQPDTPPGTPLVSQDEKR VNGLHPLTLRWEETRTPESQPDTPPGTPLV DTPPGTPLVSQDEKRDAELPKKRMRKSNPG R T P K R D 0 1 0 2 0 2 2 1 0 0 1 1 0 0 5 2 3 0 0 1 0 0 21 1 2278.1077 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1;A0A0D9SEV0;M0R000;A0A0D9SFD6 M0QYH2 111 131 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 3 0.00022844 30.779 By MS/MS 1 0.51026 0.47882 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51026 0.47882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1830600 1177300 653310 0 0 0 0 0 0 0 0 0 1830600 1177300 653310 0 0 0 0 0 0 33883 1418 35624 177911 179858 179858 1 TPESSHEGLITDPHSPSR NGGLKAAYRVWCSVRTPESSHEGLITDPHS SSHEGLITDPHSPSRFRVIGSLSNSKEFSE R T P S R F 0 1 0 1 0 0 2 1 2 1 1 0 0 0 3 4 2 0 0 0 0 0 18 0 1945.913 B4DKB2;A0A3B3ISF9;P42892 B4DKB2 687 704 ECE1 Endothelin-converting enzyme 1 yes no 3 5.9105E-05 43.794 By MS/MS 1 0.7253 0.6198 NaN 1 Median NaN NaN NaN 0 0 Median 0.7253 0.6198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2984300 1656100 1328100 0 0 0 2984300 1656100 1328100 0 0 0 0 0 0 0 0 0 0 0 0 33884 422 35625 177912 179859;179860 179859 2 TPETLVPTAPK TSRATRGRKNRSSGKTPETLVPTAPKLEPS SSGKTPETLVPTAPKLEPSTSTDQPVTPEP K T P P K L 1 0 0 0 0 0 1 0 0 0 1 1 0 0 3 0 3 0 0 1 0 0 11 0 1152.639 Q14676 Q14676 1403 1413 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 2.7063E-06 159.79 By MS/MS By MS/MS By MS/MS 2 4 1 0.84258 0.77529 22.715 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76348 0.83205 30.854 2 0 Median 0.84034 0.7616 10.403 3 1 Median NaN NaN NaN 0 0 Median 1.315 1.1265 NaN 1 0 Median 47155000 28077000 19078000 0 0 0 0 0 0 34882000 21900000 12982000 7691200 4112000 3579200 0 0 0 4581400 2064600 2516900 33885 2887 35626 177913;177914;177915;177916;177917;177918;177919 179861;179862;179863;179864;179865;179866;179867;179868;179869 179862 8 TPETVVPTALELQPSTSTDRPVTSEPTSQATR TSQVTRGRKSRSSVKTPETVVPTALELQPS TDRPVTSEPTSQATRGRKNRSSVKTPEPVV K T P T R G 2 2 0 1 0 2 3 0 0 0 2 0 0 0 5 4 8 0 0 3 0 0 32 1 3395.7056 Q14676;H0Y6Z8 Q14676 1198 1229 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 3;4 2.53E-58 119.97 By MS/MS By MS/MS By MS/MS By matching 5 2 1 1 0.45949 0.50499 16.558 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45949 0.524 13.023 5 1 Median 0.53802 0.49425 14.217 2 0 Median 0.39323 0.42539 NaN 1 0 Median 0.42385 0.37201 NaN 1 0 Median 180620000 121050000 59572000 0 0 0 0 0 0 169610000 114120000 55490000 3851400 2309900 1541400 6901600 4426100 2475500 258090 193010 65082 33886 2887 35627 177920;177921;177922;177923;177924;177925;177926;177927;177928 179870;179871;179872;179873;179874;179875;179876;179877;179878;179879;179880 179870 11 TPETVVPTAPELQASASTDQPVTSEPTSR TSQATRGRTDRSSVKTPETVVPTAPELQAS SASTDQPVTSEPTSRTTRGRKNRSSVKTPE K T P S R T 3 1 0 1 0 2 3 0 0 0 1 0 0 0 5 4 6 0 0 3 0 0 29 0 2995.4622 Q14676 Q14676 1485 1513 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 7.3247E-59 141.48 By MS/MS By matching By matching 3 2 1 0.52007 0.56182 16.849 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49416 0.52431 11.075 3 1 Median 0.75532 0.67885 0.25119 2 0 Median 0.43148 0.46174 NaN 1 0 Median NaN NaN NaN 0 0 Median 67402000 45448000 21955000 0 0 0 0 0 0 61866000 42054000 19812000 1561800 893650 668170 3974500 2500200 1474300 0 0 0 33887 2887 35628 177929;177930;177931;177932;177933;177934 179881;179882;179883;179884;179885 179883 5 TPETVVPTAPELQISTSTDQPVTPKPTSR TSRTTRSRTNMSSVKTPETVVPTAPELQIS STSTDQPVTPKPTSRTTRSRTNMSSVKNPE K T P S R T 1 1 0 1 0 2 2 0 0 1 1 1 0 0 6 3 7 0 0 3 0 0 29 1 3076.5928 Q14676 Q14676 1321 1349 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.0021331 30.542 By MS/MS 1 0.48466 0.46788 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48466 0.46788 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1525700 807010 718690 0 0 0 0 0 0 0 0 0 1525700 807010 718690 0 0 0 0 0 0 33888 2887 35629 177935 179886 179886 1 TPEVDDEALEK SAEPEQSLACQCLVRTPEVDDEALEKFDKA CLVRTPEVDDEALEKFDKALKALPMHIRLS R T P E K F 1 0 0 2 0 0 3 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 11 0 1244.5772 CON__P02754 CON__P02754 125 135 yes yes 2 0.0036237 72.006 By MS/MS 3 0.31708 0.26207 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31708 0.26207 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2831100 2547900 283210 0 0 0 0 0 0 0 0 0 2831100 2547900 283210 0 0 0 0 0 0 + 33889 745 35630 177936;177937;177938 179887;179888;179889 179887 3 TPFGAYGGLLK ______________________________ AAKRTPFGAYGGLLKDFTATDLSEFAAKAA R T P L K D 1 0 0 0 0 0 0 3 0 0 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1122.6073 A0A0B4J2A4;P42765 A0A0B4J2A4 12 22 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.00013404 86.67 By MS/MS By matching By matching By matching 2 2 1 1 0.98837 1.0167 17.453 6 Median 1.0845 1.0167 2.9498 2 0 Median 0.84552 0.75637 9.7042 2 0 Median 0.90822 1.0708 NaN 1 0 Median 1.2832 1.076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17562000 8852600 8709400 13235000 6362300 6872400 207340 94287 113050 3663600 2129000 1534600 456410 267050 189360 0 0 0 0 0 0 33890 220 35631 177939;177940;177941;177942;177943;177944 179890;179891 179891 2 TPFGPLSSR QAFRKRRQRGVSCFRTPFGPLSSRSAPASP GVSCFRTPFGPLSSRSAPASPTHPGLMSPR R T P S R S 0 1 0 0 0 0 0 1 0 0 1 0 0 1 2 2 1 0 0 0 0 0 9 0 960.50288 P85037 P85037 407 415 FOXK1 Forkhead box protein K1 yes yes 2 0.0054507 57.59 By MS/MS By MS/MS By MS/MS 1 1 1 0.82113 0.76933 15.807 3 Median 0.97253 0.96069 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72091 0.76933 NaN 1 0 Median 0.82113 0.70752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9342500 5104400 4238100 2104600 1165000 939600 0 0 0 5197900 2851900 2346000 2040000 1087500 952500 0 0 0 0 0 0 33891 2669 35632 177945;177946;177947 179892;179893;179894 179893 3 TPFLLSGTSYK AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP DGVRTPFLLSGTSYKDLMPHDLARAALTGL R T P Y K D 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 2 2 0 1 0 0 0 11 0 1212.639 P55084;B5MD38;C9JEY0;C9JE81;C9K0M0 P55084 62 72 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.0001134 121.73 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1 1.3577 1.1997 36.336 6 Median 0.93865 0.86681 NaN 1 0 Median 1.3096 1.1177 NaN 1 0 Median 0.9814 0.93799 NaN 1 0 Median 1.4366 1.2877 NaN 1 0 Median 1.4075 1.3579 NaN 1 0 Median 2.9256 2.3961 NaN 1 0 Median 80350000 37740000 42610000 20435000 10205000 10230000 3315000 1463200 1851800 49946000 23172000 26773000 5541200 2308200 3233100 868990 505220 363770 243610 85542 158070 33892 2496 35633 177948;177949;177950;177951;177952;177953 179895;179896;179897;179898;179899;179900 179897 6 TPFLLSGTSYKDLMPHDLAR AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP SGTSYKDLMPHDLARAALTGLLHRTSVPKE R T P A R A 1 1 0 2 0 0 0 1 1 0 4 1 1 1 2 2 2 0 1 0 0 0 20 1 2261.1514 P55084;B5MD38;C9JEY0;C9JE81;C9K0M0 P55084 62 81 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 3 0.00059686 28.505 By MS/MS By matching By matching 1 1 1 0.8072 0.80611 14.719 3 Median 0.8072 0.80611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87292 0.84225 NaN 1 0 Median 0.58787 0.64037 NaN 1 0 Median NaN NaN NaN 0 0 Median 7039900 3396800 3643000 4934300 2503800 2430500 0 0 0 0 0 0 1193400 387850 805500 912210 505170 407040 0 0 0 33893 2496 35634 177954;177955;177956 179901 179901 1 TPGDFSYAYQKPEETTR RDLSTPGLEKDSGGKTPGDFSYAYQKPEET GDFSYAYQKPEETTRSPDEEDYDYESYEKT K T P T R S 1 1 0 1 0 1 2 1 0 0 0 1 0 1 2 1 3 0 2 0 0 0 17 1 1988.9116 P46821 P46821 1864 1880 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 9.0799E-11 99.747 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 0.79773 0.83096 29.168 7 Median 0.52764 0.54569 NaN 1 0 Median 0.55624 0.51775 NaN 1 0 Median 0.70212 0.82831 15.742 2 0 Median 1.0505 1.0141 13.933 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58663000 31882000 26781000 7698700 4283200 3415500 5854400 3635000 2219400 23746000 13032000 10714000 21364000 10932000 10432000 0 0 0 0 0 0 33894 2347 35635 177957;177958;177959;177960;177961;177962;177963 179902;179903;179904;179905;179906;179907;179908;179909;179910;179911 179905 10 TPGKEAVAMESYAK SEMLMAHAVTQLANRTPGKEAVAMESYAKA RTPGKEAVAMESYAKALRMLPTIIADNAGY R T P A K A 3 0 0 0 0 0 2 1 0 0 0 2 1 0 1 1 1 0 1 1 0 0 14 1 1480.7232 P78371;F5GWF6 P78371 428 441 CCT2 T-complex protein 1 subunit beta yes no 2 1.446E-06 158.11 By MS/MS 2 0.99904 0.94851 16.583 2 Median 0.99904 0.94851 16.583 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18186000 7769500 10416000 18186000 7769500 10416000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33895 2644 35636 177964;177965 179912;179913;179914 179912 3 TPGNNLHEVETAQGQR HIVPSDQQQIVRVLRTPGNNLHEVETAQGQ PGNNLHEVETAQGQRFLGTFSLLTPLKREK R T P Q R F 1 1 2 0 0 2 2 2 1 0 1 0 0 0 1 0 2 0 0 1 0 0 16 0 1749.8394 E9PQD0;E9PS30;E9PLI6;E9PS76;Q8N9N8 E9PQD0 33 48 EIF1AD Probable RNA-binding protein EIF1AD yes no 3 3.6709E-05 56.514 By MS/MS By MS/MS By matching 2 1 1 0.92758 0.84511 6.9967 4 Median 0.92758 0.89464 6.5545 2 0 Median 1.0064 0.8362 NaN 1 0 Median 0.84823 0.79229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5168500 2463000 2705500 2720600 1270000 1450600 1568700 735930 832740 879290 457110 422180 0 0 0 0 0 0 0 0 0 33896 959 35637 177966;177967;177968;177969 179915;179916;179917 179917 3 TPGPGAQSALR ALHIKLRATGGNRTKTPGPGAQSALRALAR NRTKTPGPGAQSALRALARSGMKIGRIEDV K T P L R A 2 1 0 0 0 1 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1053.5567 P62263;A0A2R8Y811;E5RH77 P62263 107 117 RPS14 40S ribosomal protein S14 yes no 2 6.6504E-05 152.11 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 2 3 2 0.84309 0.80087 11.98 11 Median 0.77502 0.74857 1.7436 2 0 Median 0.86353 0.7152 NaN 1 0 Median 0.82218 0.83102 NaN 1 0 Median 0.99955 0.80646 0.98344 2 0 Median 0.7883 0.80012 10.629 3 0 Median 1.1717 0.93693 22.175 2 0 Median 100110000 52695000 47416000 32215000 17686000 14529000 27228000 13989000 13239000 27455000 14505000 12950000 7144300 3393100 3751200 3687300 1964100 1723200 2381400 1157900 1223500 33897 386 35638 177970;177971;177972;177973;177974;177975;177976;177977;177978;177979;177980;177981 179918;179919;179920;179921;179922;179923;179924;179925;179926;179927;179928;179929;179930;179931;179932;179933;179934;179935;179936 179926 19 TPGRPTSSQSYEQNIK EHPLQYNYTFWYSRRTPGRPTSSQSYEQNI PGRPTSSQSYEQNIKQIGTFASVEQFWRFY R T P I K Q 0 1 1 0 0 2 1 1 0 1 0 1 0 0 2 3 2 0 1 0 0 0 16 1 1791.8751 O60573;C9JEL3;B9A044;B8ZZ50 O60573 68 83 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 3 0.008598 25.365 By MS/MS By MS/MS 1 1 0.8284 0.76689 12.166 2 Median NaN NaN NaN 0 0 Median 0.77486 0.70368 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.88564 0.83579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3903600 2152500 1751100 0 0 0 1864500 1009100 855380 0 0 0 2039100 1143400 895730 0 0 0 0 0 0 33898 1622 35639 177982;177983 179937;179938 179938 2 TPGSLGSSASAGQAAASAPLPLESGELSR ATIRFVMKCYDPVGKTPGSLGSSASAGQAA AASAPLPLESGELSRGDLSRPEDADTSGPC K T P S R G 6 1 0 0 0 1 2 4 0 0 4 0 0 0 3 7 1 0 0 0 0 0 29 0 2668.3304 Q9BZE9;J3QL04;J3QR12;J3KRY8 Q9BZE9 181 209 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 3 0.0056901 22.239 By MS/MS 1 0.58882 0.5773 NaN 1 Median 0.58882 0.5773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4083800 2602300 1481500 4083800 2602300 1481500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33899 3899 35640 177984 179939 179939 1 TPGTGSLAAAVETASGR ATDRDPWHPLSDGSRTPGTGSLAAAVETAS GTGSLAAAVETASGRQALVVGKPSPYMFEC R T P G R Q 4 1 0 0 0 0 1 3 0 0 1 0 0 0 1 2 3 0 0 1 0 0 17 0 1544.7794 Q96GD0 Q96GD0 190 206 PDXP Pyridoxal phosphate phosphatase yes yes 2 5.797E-12 128.9 By MS/MS 1 0.80813 0.75672 NaN 1 Median 0.80813 0.75672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13966000 7322100 6643600 13966000 7322100 6643600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33900 3655 35641 177985 179940;179941 179941 2 TPGYVVTPHTMNLLK RGEALKFHKPGENYKTPGYVVTPHTMNLLK TPGYVVTPHTMNLLKQHLEITGGQVRTRFP K T P L K Q 0 0 1 0 0 0 0 1 1 0 2 1 1 0 2 0 3 0 1 2 0 0 15 0 1669.8862 P47897;A0A1B0GVU9;B4DDN1;A0A0U1RQT0;C9J165;A0A0U1RR66 P47897 240 254 QARS Glutamine--tRNA ligase yes no 3 0.00097034 36.892 By MS/MS 1 0.82976 0.75271 NaN 1 Median 0.82976 0.75271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11713000 6478600 5234000 11713000 6478600 5234000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33901 2356 35642 177986 179942;179943 179943 2 TPHPVLTPVAANQAK PSTAMGSSVPYSTAKTPHPVLTPVAANQAK TPHPVLTPVAANQAKQGSLINSLKPSGPTP K T P A K Q 3 0 1 0 0 1 0 0 1 0 1 1 0 0 3 0 2 0 0 2 0 0 15 0 1542.8518 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;A0A494C104 A0A494C1F2 1138 1152 NUP214 Nuclear pore complex protein Nup214 yes no 2;3 1.138E-06 88.163 By matching By matching By MS/MS By MS/MS By matching By MS/MS 2 3 4 2 1 2 0.71138 0.71472 23.801 14 Median 0.53745 0.52538 2.2878 2 0 Median 0.7123 0.63169 16.912 3 0 Median 0.70148 0.76659 5.3815 4 0 Median 0.69186 0.6036 21.296 2 1 Median 1.1657 1.2201 NaN 1 0 Median 0.93417 0.78546 14.901 2 0 Median 95731000 54004000 41728000 6359700 4064400 2295300 10843000 5822000 5021100 51112000 29605000 21508000 7101600 4326800 2774800 9923300 4648900 5274300 10391000 5537000 4854300 33902 467 35643 177987;177988;177989;177990;177991;177992;177993;177994;177995;177996;177997;177998;177999;178000 179944;179945;179946;179947;179948;179949;179950;179951;179952;179953;179954 179945 11 TPHVLVLGSGVYR LYLTYWGTTHDLTFRTPHVLVLGSGVYRIG FRTPHVLVLGSGVYRIGSSVEFDWCAVGCI R T P Y R I 0 1 0 0 0 0 0 2 1 0 2 0 0 0 1 1 1 0 1 3 0 0 13 0 1396.7827 F8VPD4;P27708 F8VPD4 869 881 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2;3 5.8359E-06 96.015 By MS/MS By MS/MS By matching By matching 5 4 1 1 1.0871 0.97153 24.71 10 Median 0.97691 0.93888 16.875 4 1 Median 1.0303 0.87728 34.332 4 0 Median 1.1381 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2165 1.2707 NaN 1 0 Median NaN NaN NaN 0 0 Median 88005000 41200000 46805000 62973000 29495000 33479000 21557000 10176000 11382000 2299300 1089000 1210300 0 0 0 1174800 440720 734110 0 0 0 33903 1057 35644 178001;178002;178003;178004;178005;178006;178007;178008;178009;178010;178011 179955;179956;179957;179958;179959;179960;179961;179962;179963;179964;179965;179966 179956 12 TPHYGSQTPLHDGSR TPMYGSQTPLQDGSRTPHYGSQTPLHDGSR TPHYGSQTPLHDGSRTPAQSGAWDPNNPNT R T P S R T 0 1 0 1 0 1 0 2 2 0 1 0 0 0 2 2 2 0 1 0 0 0 15 0 1651.7703 O00267 O00267 799 813 SUPT5H Transcription elongation factor SPT5 yes yes 2;3;4 9.1691E-05 61.732 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 1 0.81673 0.68744 16.999 10 Median 0.93135 0.94054 NaN 1 0 Median 0.84997 0.73081 7.3457 3 0 Median 0.49157 0.53514 3.7111 2 0 Median 0.82423 0.69057 6.9672 3 0 Median 0.65872 0.68069 NaN 1 0 Median NaN NaN NaN 0 0 Median 12876000 7708500 5167800 570130 239570 330560 6877300 3770200 3107000 3411300 2517800 893440 1158500 582460 576030 859100 598370 260740 0 0 0 33904 1452 35645 178012;178013;178014;178015;178016;178017;178018;178019;178020;178021 179967;179968;179969;179970;179971;179972;179973;179974 179972 8 TPIAAGHPSMNLLLR ESMDKNKMGLKGPLKTPIAAGHPSMNLLLR TPIAAGHPSMNLLLRKTFDLYANVRPCVSI K T P L R K 2 1 1 0 0 0 0 1 1 1 3 0 1 0 2 1 1 0 0 0 0 0 15 0 1589.8712 P50213;H0YLI6;H0YMU3;H0YKD0 P50213 101 115 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2;3 2.1691E-26 195.25 By MS/MS By MS/MS By matching By matching 4 2 1 1 0.92704 0.81762 19.033 8 Median 0.78777 0.76256 8.2498 4 0 Median 1.0037 0.84021 4.9204 2 0 Median 1.0079 0.99686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5586 1.2631 NaN 1 0 Median 134220000 75626000 58599000 115350000 65686000 49661000 14068000 7205600 6862100 4110800 2396800 1714000 0 0 0 0 0 0 699000 337080 361920 33905 2409 35646 178022;178023;178024;178025;178026;178027;178028;178029 179975;179976;179977;179978;179979;179980;179981;179982;179983 179978 9 TPIETLIR SSVIEQLFFVRLVGKTPIETLIRDMLLSGS FVRLVGKTPIETLIRDMLLSGSSFNWPYMS K T P I R D 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 0 2 0 0 0 0 0 8 0 941.55458 P10589;F1DAL7;F1DAL9;P10588 P10589 397 404 NR2F1;NR2F6 COUP transcription factor 1;Nuclear receptor subfamily 2 group F member 6 no no 2 0.00081148 122.13 By MS/MS By MS/MS 3 1 0.69264 0.75563 13.954 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67473 0.69778 11.265 2 2 Median 0.98748 0.85095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42219000 27166000 15053000 0 0 0 0 0 0 32277000 21235000 11042000 9941800 5931000 4010800 0 0 0 0 0 0 33906 1941;1940 35647 178030;178031;178032;178033 179984;179985;179986;179987 179984 4 TPIGSFLGSLSLLPATK SKPTLKEVVIVSATRTPIGSFLGSLSLLPA IGSFLGSLSLLPATKLGSIAIQGAIEKAGI R T P T K L 1 0 0 0 0 0 0 2 0 1 4 1 0 1 2 3 2 0 0 0 0 0 17 0 1700.9713 P24752;E9PRQ6 P24752 50 66 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes no 2 2.9654E-190 320.48 By MS/MS By MS/MS By MS/MS 2 1 2 0.71504 0.73981 15.05 5 Median 0.68228 0.64859 0.20988 2 0 Median 1.1007 0.93726 NaN 1 0 Median 0.71633 0.7429 0.58879 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138340000 75336000 63000000 40517000 23374000 17143000 38214000 17966000 20248000 59605000 33996000 25609000 0 0 0 0 0 0 0 0 0 33907 2126 35648 178034;178035;178036;178037;178038 179988;179989;179990;179991;179992;179993;179994 179994 7 TPIGTPAMNMATPTPGHIMSMTPEQLQAWR ASQMGGSTPVLTPGKTPIGTPAMNMATPTP GHIMSMTPEQLQAWRWEREIDERNRPLSDE K T P W R W 3 1 1 0 0 2 1 2 1 2 1 0 4 0 5 1 5 1 0 0 0 0 30 0 3264.5552 O75533 O75533 358 387 SF3B1 Splicing factor 3B subunit 1 yes yes 3 3.917E-20 80.359 By MS/MS By MS/MS 1 1 0.42873 0.46289 9.5721 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39335 0.4326 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.4673 0.49531 NaN 1 1 Median NaN NaN NaN 0 0 Median 10333000 7779000 2554200 0 0 0 0 0 0 7752700 6410800 1341900 0 0 0 2580500 1368100 1212400 0 0 0 33908 1683 35649 178039;178040 179995;179996 179995 2 TPIIIIPAATTSLITMLNAK VSQARPPPNQKKGSRTPIIIIPAATTSLIT IPAATTSLITMLNAKDLLQDLKFVPSDEKK R T P A K D 3 0 1 0 0 0 0 0 0 5 2 1 1 0 2 1 4 0 0 0 0 0 20 0 2081.217 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2 Q6P1J9 359 378 CDC73 Parafibromin yes no 2 4.587E-05 40.577 By MS/MS 1 0.7185 0.73929 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7185 0.73929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2612200 1458900 1153400 0 0 0 0 0 0 2612200 1458900 1153400 0 0 0 0 0 0 0 0 0 33909 3150 35650 178041 179997;179998 179997 2 TPIITPNTK QEHSKESPARSTPHRTPIITPNTKAIQERL RSTPHRTPIITPNTKAIQERLFKQDTSSST R T P T K A 0 0 1 0 0 0 0 0 0 2 0 1 0 0 2 0 3 0 0 0 0 0 9 0 983.56515 Q9NQW6;H7C3S1 Q9NQW6 397 405 ANLN Actin-binding protein anillin yes no 2 0.011539 47.198 By matching By MS/MS 1 1 0.54937 0.57382 76.453 2 Median 0.33088 0.33419 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91213 0.98527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5276700 3481200 1795500 2808900 2223900 585050 0 0 0 2467800 1257300 1210400 0 0 0 0 0 0 0 0 0 33910 4069 35651 178042;178043 179999 179999 1 TPIPLLLR SLQPKGYTLATTQVKTPIPLLLRGQLREYQ LATTQVKTPIPLLLRGQLREYQHIGLDWLV K T P L R G 0 1 0 0 0 0 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 8 0 921.60114 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 608 615 SRCAP Helicase SRCAP yes no 2 0.0056774 74.439 By MS/MS By matching By matching By matching 1 1 1 1 0.84014 0.76884 6.6393 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70757 0.74511 NaN 1 0 Median 0.86037 0.74626 NaN 1 0 Median 0.82039 0.85781 NaN 1 0 Median 0.89577 0.79211 NaN 1 0 Median 16315000 9401100 6914100 0 0 0 0 0 0 14225000 8219400 6005700 325510 171370 154140 1702100 978990 723110 62550 31349 31201 33911 3199 35652 178044;178045;178046;178047 180000;180001 180000 2 TPIPTSLR VLIEDNGNPVGTRIKTPIPTSLRKREGEYS PVGTRIKTPIPTSLRKREGEYSKVLAIAQN K T P L R K 0 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 2 0 0 0 0 0 8 0 883.51272 Q6P1L8 Q6P1L8 121 128 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 2 0.0074447 67.032 By MS/MS By MS/MS 1 1 0.68564 0.66919 NaN 1 Median 0.68564 0.66919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2975400 1692500 1282900 2975400 1692500 1282900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33912 3151 35653 178048;178049 180002;180003 180002 2 TPIQVLHEYGMK GFCSLGKMITAKPGKTPIQVLHEYGMKTKN PGKTPIQVLHEYGMKTKNIPVYECERSDVQ K T P M K T 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 0 1 0 1 1 0 0 12 0 1414.7279 F8WEG8;G5E9Q4;C9JMM3;O75569 F8WEG8 23 34 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes no 3 0.0092063 26.969 By MS/MS By matching 1 1 0.89168 0.80193 14.411 2 Median 0.93122 0.88796 NaN 1 0 Median 0.85381 0.72424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5889300 3114700 2774600 5194200 2781500 2412700 695070 333150 361910 0 0 0 0 0 0 0 0 0 0 0 0 33913 710 35654 178050;178051 180004;180005 180005 2 TPISEHAVFNVDLMSK GPRRVPVLGKEYTEKTPISEHAVFNVDLMS PISEHAVFNVDLMSKKIHLTENGIRVDIGD K T P S K K 1 0 1 1 0 0 1 0 1 1 1 1 1 1 1 2 1 0 0 2 0 0 16 0 1786.8924 Q9P2J5 Q9P2J5 1139 1154 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 3.5631E-05 51.591 By MS/MS By matching 1 1 0.9041 0.82953 11.764 2 Median 0.92961 0.90148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8793 0.76332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8484600 4205900 4278700 8304600 4117600 4187000 0 0 0 0 0 0 179930 88276 91656 0 0 0 0 0 0 33914 4224 35655 178052;178053 180006;180007 180007 2 TPISLLQEYGTR ______________________________ PGKTPISLLQEYGTRIGKTPVYDLLKAEGQ K T P T R I 0 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1376.73 F8VYK6;F8VZZ7;F8VP94;F8VYK3;Q15633 F8VYK6 9 20 TARBP2 RISC-loading complex subunit TARBP2 yes no 2 0.00058433 74.162 By MS/MS 1 0.99926 1.002 NaN 1 Median 0.99926 1.002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2524400 994480 1529900 2524400 994480 1529900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33915 1056 35656 178054 180008;180009 180008 2 TPIVGQPSIPGGPVR ASVESSSGEAFHVGKTPIVGQPSIPGGPVR TPIVGQPSIPGGPVRLCPGRIRYFKI____ K T P V R L 0 1 0 0 0 1 0 3 0 2 0 0 0 0 4 1 1 0 0 2 0 0 15 0 1473.8304 CON__P12763 CON__P12763 334 348 yes yes 2;3 4.1032E-90 218.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 8 8 5 7 1 0.034931 0.030729 201.45 22 Median 0.044706 0.042051 205.62 10 10 Median 0.017016 0.014197 180.14 5 5 Median 0.11423 0.12452 167.59 5 5 Median NaN NaN NaN 0 0 Median 0.038442 0.038718 149.14 2 2 Median NaN NaN NaN 0 0 Median 2112400000 2088900000 23566000 1431100000 1417500000 13574000 309720000 306210000 3515700 214130000 208630000 5502500 34287000 34287000 0 111310000 110340000 974130 11888000 11888000 0 + 33916 755 35657 178055;178056;178057;178058;178059;178060;178061;178062;178063;178064;178065;178066;178067;178068;178069;178070;178071;178072;178073;178074;178075;178076;178077;178078;178079;178080;178081;178082;178083;178084;178085;178086;178087;178088;178089;178090;178091;178092;178093;178094;178095;178096;178097 180010;180011;180012;180013;180014;180015;180016;180017;180018;180019;180020;180021;180022;180023;180024;180025;180026;180027;180028;180029;180030;180031;180032;180033;180034;180035;180036;180037;180038;180039;180040;180041;180042;180043;180044;180045;180046;180047;180048;180049;180050;180051;180052;180053;180054;180055;180056;180057;180058;180059;180060;180061;180062;180063;180064;180065;180066;180067;180068;180069 180059 60 TPKEEAQSLEDLAGFK LDPAARVTGMKKWPRTPKEEAQSLEDLAGF PKEEAQSLEDLAGFKELFQTPGPSEESMTD R T P F K E 2 0 0 1 0 1 3 1 0 0 2 2 0 1 1 1 1 0 0 0 0 0 16 1 1761.8785 P46013 P46013 1091 1106 MKI67 Antigen KI-67 yes no 2;3 4.569E-09 116.51 By matching By matching By MS/MS By matching By matching 1 1 6 3 3 0.78156 0.89406 37.652 14 Median 0.77109 0.73082 NaN 1 0 Median 0.71374 0.67051 NaN 1 0 Median 0.76522 0.86806 30.95 6 0 Median 1.1723 1.0903 40.618 3 0 Median 1.4575 1.6198 16.149 3 0 Median NaN NaN NaN 0 0 Median 54304000 28522000 25781000 3310600 1854700 1455900 1402500 690450 712010 42020000 23008000 19012000 1281700 730130 551590 6288700 2238800 4049900 0 0 0 33917 2335 35658 178098;178099;178100;178101;178102;178103;178104;178105;178106;178107;178108;178109;178110;178111 180070;180071;180072;180073;180074 180071 5 TPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQSK TSRATRRKTNRSSVKTPKPVEPAASDLEPF QSVTPEAIAQGGQSKTLRSSTVRAMPVPTT K T P S K T 4 0 0 2 0 3 3 2 0 1 1 2 0 1 6 3 4 0 0 2 0 0 34 1 3492.726 Q14676 Q14676 1649 1682 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 4 3.1148E-06 37.274 By MS/MS 1 0.22648 0.26145 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22648 0.26145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5168200 4158400 1009700 0 0 0 0 0 0 5168200 4158400 1009700 0 0 0 0 0 0 0 0 0 33918 2887 35659 178112 180075 180075 1 TPLALAGSPTPK AKGLGHPPSSPLLKKTPLALAGSPTPKNPE LKKTPLALAGSPTPKNPEDKSPQLSLSPRP K T P P K N 2 0 0 0 0 0 0 1 0 0 2 1 0 0 3 1 2 0 0 0 0 0 12 0 1151.655 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 170 181 WIZ Protein Wiz yes no 2 3.4285E-06 111.06 By MS/MS By matching 1 1 0.45739 0.48289 42.341 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60439 0.65143 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34615 0.35795 NaN 1 0 Median NaN NaN NaN 0 0 Median 9291900 6038000 3253900 0 0 0 0 0 0 6301800 3893500 2408200 0 0 0 2990200 2144500 845720 0 0 0 33919 656 35660 178113;178114 180076 180076 1 TPLENLVLQAK RLEKMVPFQVPEILRTPLENLVLQAKIHMP EILRTPLENLVLQAKIHMPEKTAVEFLSKA R T P A K I 1 0 1 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1224.7078 H7BXY3;Q7L2E3 H7BXY3 786 796 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0041397 70.256 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 3 1 1.0693 1.0602 25.925 8 Median 0.88222 0.85837 NaN 1 0 Median 1.2711 1.1061 NaN 1 0 Median 1.0478 1.135 NaN 1 0 Median 1.2012 1.0162 NaN 1 0 Median 1.0543 1.1082 43.338 3 1 Median 1.1081 0.92394 NaN 1 0 Median 22670000 10654000 12016000 6246400 3279600 2966800 2967500 1278600 1688900 3470000 1412300 2057700 537670 241270 296400 8722800 4105700 4617100 725820 336480 389340 33920 1244 35661 178115;178116;178117;178118;178119;178120;178121;178122 180077;180078;180079 180079 3 TPLFDQIIDMLR CNALETLLIHRDLLRTPLFDQIIDMLRVEQ LLRTPLFDQIIDMLRVEQVKIHAGPKFASY R T P L R V 0 1 0 2 0 1 0 0 0 2 2 0 1 1 1 0 1 0 0 0 0 0 12 0 1460.7697 P54886 P54886 627 638 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0030154 73.067 By MS/MS 1 1.2694 1.0969 NaN 1 Median NaN NaN NaN 0 0 Median 1.2694 1.0969 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7633700 2915800 4717800 0 0 0 7633700 2915800 4717800 0 0 0 0 0 0 0 0 0 0 0 0 33921 2488 35662 178123 180080 180080 1172 1 TPLFLSWSHQSANK T P N K 1 0 1 0 0 1 0 0 1 0 2 1 0 1 1 3 1 1 0 0 0 0 14 0 1614.8154 REV__H7C5G6 yes no 3 0.059478 11.44 By MS/MS 1 3.4154 2.9671 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.4154 2.9671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1399500 140040 1259500 0 0 0 0 0 0 0 0 0 1399500 140040 1259500 0 0 0 0 0 0 + 33922 4529 35663 178124 180081 180081 1 TPLHEIALSIK RFERLETHMTPEMFRTPLHEIALSIKLLRL EMFRTPLHEIALSIKLLRLGGIGQFLAKAI R T P I K L 1 0 0 0 0 0 1 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1220.7129 Q08211 Q08211 796 806 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.9118E-15 191.4 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 1 7 2 8 5 1.0642 1.0455 12.526 28 Median 1.0492 0.99476 10.753 5 1 Median 1.218 1.0361 NaN 1 0 Median 1.0151 1.0797 17.814 7 0 Median 1.2487 1.0749 4.2152 2 0 Median 1.0017 1.0283 14.318 8 0 Median 1.2737 1.0773 7.8207 5 0 Median 414040000 197240000 216800000 42460000 19444000 23016000 5817700 2618800 3198900 225540000 110830000 114700000 8412700 3721300 4691400 118460000 55792000 62666000 13356000 4835600 8520000 33923 2736 35664 178125;178126;178127;178128;178129;178130;178131;178132;178133;178134;178135;178136;178137;178138;178139;178140;178141;178142;178143;178144;178145;178146;178147;178148;178149;178150;178151;178152 180082;180083;180084;180085;180086;180087;180088;180089;180090;180091;180092;180093;180094;180095;180096;180097;180098;180099;180100;180101;180102;180103;180104;180105;180106;180107;180108;180109;180110;180111;180112;180113 180090 32 TPLLLMLGQEDR EMLDKSPIRYIPQVKTPLLLMLGQEDRRVP QVKTPLLLMLGQEDRRVPFKQGMEYYRALK K T P D R R 0 1 0 1 0 1 1 1 0 0 4 0 1 0 1 0 1 0 0 0 0 0 12 0 1384.7384 C9JIF9;P13798 C9JIF9 670 681 APEH Acylamino-acid-releasing enzyme yes no 2 4.3735E-05 136.63 By MS/MS By MS/MS 1 1 0.88977 0.80469 3.1265 2 Median 0.8317 0.7871 NaN 1 0 Median 0.95189 0.82268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17569000 9085100 8484200 8082000 4185800 3896200 9487300 4899300 4588000 0 0 0 0 0 0 0 0 0 0 0 0 33924 699 35665 178153;178154 180114;180115;180116;180117;180118;180119 180116 6 TPLMEAAENNHLEAVK VQAGANIDTCSEDQRTPLMEAAENNHLEAV PLMEAAENNHLEAVKYLIKAGALVDPKDAE R T P V K Y 3 0 2 0 0 0 3 0 1 0 2 1 1 0 1 0 1 0 0 1 0 0 16 0 1765.8669 Q9H9B1;A0A1B0GV09;A0A1B0GU48;A0A1B0GWF6;A0A0C4DGF8;A0A1B0GTP4 Q9H9B1 808 823 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 3 0.00019969 42.913 By MS/MS 1 0.8052 0.85951 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8052 0.85951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14267000 7598000 6669000 0 0 0 0 0 0 14267000 7598000 6669000 0 0 0 0 0 0 0 0 0 33925 3997 35666 178155 180120;180121 180120 2 TPLRPLDPTR GLPHISDVVLDKANKTPLRPLDPTRLQGIN DKANKTPLRPLDPTRLQGINCGPDFTPSFA K T P T R L 0 2 0 1 0 0 0 0 0 0 2 0 0 0 3 0 2 0 0 0 0 0 10 1 1164.6615 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073;C9J2Z7 E7EX73 483 492 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.011313 60.436 By matching By MS/MS By matching 1 1 1 0.61197 0.65445 38.625 3 Median 0.61197 0.65445 NaN 1 0 Median 0.52357 0.52872 NaN 1 0 Median 0.88575 1.1189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11840000 8038000 3801600 4300900 3012200 1288600 5926900 3945100 1981800 1611800 1080700 531160 0 0 0 0 0 0 0 0 0 33926 894 35667 178156;178157;178158 180122;180123 180123 2 TPLSEAEFEEIMNR RGDYGPPGREMDTARTPLSEAEFEEIMNRN RTPLSEAEFEEIMNRNRAISSSAISRAVSD R T P N R N 1 1 1 0 0 0 4 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 14 0 1664.7716 F8WJN3;Q16630 F8WJN3 334 347 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes no 2;3 6.9668E-08 136.48 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 3 3 0.87145 0.86091 75.845 12 Median 0.89695 0.88329 19.015 2 0 Median NaN NaN NaN 0 0 Median 0.81702 0.84672 132.6 4 1 Median 1.0332 0.8647 21.215 3 0 Median 0.96274 0.96885 19.958 3 0 Plateau NaN NaN NaN 0 0 Median 102890000 27354000 75540000 6888000 3636800 3251200 0 0 0 89429000 20348000 69081000 3983800 1889100 2094700 2593000 1479800 1113200 0 0 0 33927 1099 35668;35669 178159;178160;178161;178162;178163;178164;178165;178166;178167;178168;178169;178170 180124;180125;180126;180127;180128;180129;180130;180131;180132;180133;180134 180124 373 11 TPLSQSMSVLPTSKPEK KSKIKTLLSKSNLQKTPLSQSMSVLPTSKP LSQSMSVLPTSKPEKVLLRPGDFQSQWDED K T P E K V 0 0 0 0 0 1 1 0 0 0 2 2 1 0 3 4 2 0 0 1 0 0 17 1 1828.9604 E7EX40;Q6WKZ4 E7EX40 81 97 RAB11FIP1 Rab11 family-interacting protein 1 yes no 3 0.02795 16.123 By matching By MS/MS By matching 1 1 1 0.7356 0.71861 18.532 3 Median 0.94295 0.96136 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60347 0.68134 NaN 1 0 Median 0.7356 0.71861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6737200 3390900 3346300 2001000 871150 1129900 0 0 0 3931300 2165000 1766400 804880 354820 450070 0 0 0 0 0 0 33928 905 35670 178171;178172;178173 180135 180135 1 TPLYSQLLQAYK LHNSGLLSLDPVQDKTPLYSQLLQAYKWSN QDKTPLYSQLLQAYKWSNKLQYHAGLASGL K T P Y K W 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 1 1 0 2 0 0 0 12 0 1423.7711 Q6P2C8;A0A494C0K7;A0A494C0P0 Q6P2C8 101 112 MED27 Mediator of RNA polymerase II transcription subunit 27 yes no 2 0.018731 33.378 By matching By MS/MS By matching By matching 1 1 1 1 0.96053 0.90434 30.406 4 Median 0.95723 0.93814 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96384 0.92496 NaN 1 0 Median 1.0418 0.88419 NaN 1 0 Median 0.4795 0.4994 NaN 1 0 Median NaN NaN NaN 0 0 Median 4336200 2168200 2168000 1687300 761290 926030 0 0 0 2231500 1190200 1041300 233370 116060 117320 184080 100700 83380 0 0 0 33929 460 35671 178174;178175;178176;178177 180136;180137 180137 2 TPMENIGLQDSLLSR LAAANPVYGRYDQYKTPMENIGLQDSLLSR TPMENIGLQDSLLSRFDLLFIMLDQMDPEQ K T P S R F 0 1 1 1 0 1 1 1 0 1 3 0 1 0 1 2 1 0 0 0 0 0 15 0 1672.8454 P25205;J3KQ69;A0A499FHX9 P25205 464 478 MCM3 DNA replication licensing factor MCM3 yes no 2;3 1.6552E-122 238.98 By MS/MS By matching By MS/MS By matching 5 3 2 1 0.83391 0.80203 19.423 11 Median 0.76193 0.73415 18.036 5 1 Median 0.99325 0.88326 6.6556 3 0 Plateau 0.83868 0.89377 1.9738 2 1 Median 1.2091 1.0457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110360000 63395000 46961000 71759000 41591000 30169000 1881800 851200 1030600 36297000 20732000 15565000 417990 221110 196880 0 0 0 0 0 0 33930 2129 35672;35673 178178;178179;178180;178181;178182;178183;178184;178185;178186;178187;178188 180138;180139;180140;180141;180142;180143;180144 180144 891 7 TPMGIVLDALEQQEEGINR KNKLENKMEGIGLKRTPMGIVLDALEQQEE IVLDALEQQEEGINRLTDYISKVKE_____ R T P N R L 1 1 1 1 0 2 3 2 0 2 2 0 1 0 1 0 1 0 0 1 0 0 19 0 2112.0521 O75915 O75915 160 178 ARL6IP5 PRA1 family protein 3 yes yes 3 1.5078E-13 104.2 By MS/MS By matching By matching 6 1 1 0.85309 0.86428 15.261 8 Median 0.85309 0.86428 16.716 6 0 Median 1.0927 0.93184 NaN 1 0 Median 0.6814 0.76026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10273000 5360700 4912500 8877200 4732700 4144500 1070100 461370 608700 325830 166580 159250 0 0 0 0 0 0 0 0 0 33931 1705 35674;35675 178189;178190;178191;178192;178193;178194;178195;178196 180145;180146;180147;180148 180145 562 4 TPMMSVPVLNTK PRLREILMVASANIKTPMMSVPVLNTKKAL NIKTPMMSVPVLNTKKALKRVKSLKKQLTR K T P T K K 0 0 1 0 0 0 0 0 0 0 1 1 2 0 2 1 2 0 0 2 0 0 12 0 1316.6832 O95602;B9ZVN9 O95602 1261 1272 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 3.1373E-05 90.827 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33932 1781 35676 178197 180149 180149 1 TPMSVLQQAGGSMMDGPGPR RCRSPGMLEPLGSSRTPMSVLQQAGGSMMD LQQAGGSMMDGPGPRIPDHQRTSVPENHAQ R T P P R I 1 1 0 1 0 2 0 4 0 0 1 0 3 0 3 2 1 0 0 1 0 0 20 0 2015.9227 Q9UQ35 Q9UQ35 2144 2163 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 4.2202E-10 89.629 By MS/MS 4 0.79922 0.78093 15.951 4 Median 0.79922 0.78093 15.951 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33250000 19003000 14247000 33250000 19003000 14247000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33933 4359 35677 178198;178199;178200;178201 180150;180151;180152;180153;180154 180152 5 TPMYGSQTPLQDGSR PMYGSQTPMYGSGSRTPMYGSQTPLQDGSR TPMYGSQTPLQDGSRTPHYGSQTPLHDGSR R T P S R T 0 1 0 1 0 2 0 2 0 0 1 0 1 0 2 2 2 0 1 0 0 0 15 0 1636.7515 O00267 O00267 784 798 SUPT5H Transcription elongation factor SPT5 yes yes 2 6.3361E-14 176.42 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.84059 0.782 42.613 4 Median 0.81694 0.78991 NaN 1 0 Median 0.908 0.77417 NaN 1 0 Median 0.32268 0.35481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86492 0.90861 NaN 1 0 Median NaN NaN NaN 0 0 Median 23232000 15337000 7894300 5243600 2541200 2702300 3262000 1723900 1538100 11489000 9274700 2213800 0 0 0 3237600 1797500 1440100 0 0 0 33934 1452 35678 178202;178203;178204;178205 180155;180156 180155 2 TPMYGSQTPMYGSGSR VGSRRPGGMTSTYGRTPMYGSQTPMYGSGS PMYGSQTPMYGSGSRTPMYGSQTPLQDGSR R T P S R T 0 1 0 0 0 1 0 3 0 0 0 0 2 0 2 3 2 0 2 0 0 0 16 0 1718.7392 O00267 O00267 768 783 SUPT5H Transcription elongation factor SPT5 yes yes 2 6.8928E-21 141.73 By MS/MS By MS/MS 1 2 0.63903 0.66909 3.1412 3 Median NaN NaN NaN 0 0 Median 0.76762 0.66909 NaN 1 0 Median 0.62062 0.68252 4.1352 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17152000 10475000 6677000 0 0 0 1192900 646040 546890 15959000 9828900 6130100 0 0 0 0 0 0 0 0 0 33935 1452 35679 178206;178207;178208 180157;180158;180159 180158 3 TPNGVVLAPVQLGK ELLLKTFDHYCEYRRTPNGVVLAPVQLGKW RTPNGVVLAPVQLGKWLVLFCDEINLPDMD R T P G K W 1 0 1 0 0 1 0 2 0 0 2 1 0 0 2 0 1 0 0 3 0 0 14 0 1391.8136 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2644 2657 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 4.52E-07 155.53 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 2 0.86061 0.78056 21.198 9 Median 0.72606 0.7289 NaN 1 0 Median 0.95923 0.84064 15.666 2 0 Median 0.81832 0.89025 18.596 2 0 Median 0.86008 0.80517 5.6029 2 0 Median NaN NaN NaN 0 0 Median 1.2317 1.0493 42.462 2 0 Median 99661000 56158000 43503000 37712000 20945000 16767000 12247000 6485900 5760800 44671000 26159000 18511000 4066000 2077500 1988500 0 0 0 965460 490100 475360 33936 2865 35680 178209;178210;178211;178212;178213;178214;178215;178216;178217 180160;180161;180162;180163;180164;180165;180166;180167 180160 8 TPNPANQYQFDK DSVLSCLYPGDHGKKTPNPANQYQFDKVGI GKKTPNPANQYQFDKVGILTLSDYVLELGH K T P D K V 1 0 2 1 0 2 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 12 0 1421.6575 Q13769 Q13769 413 424 THOC5 THO complex subunit 5 homolog yes yes 2 0.00037636 133.89 By MS/MS By MS/MS 1 1 0.81994 0.76334 3.6522 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78358 0.78331 NaN 1 0 Median 0.85799 0.74388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24658000 12714000 11944000 0 0 0 0 0 0 21625000 11029000 10596000 3032900 1684800 1348100 0 0 0 0 0 0 33937 2837 35681 178218;178219 180168;180169;180170;180171;180172;180173 180170 6 TPPAPSPFDLPELK ILKEMCDVEQVLSKKTPPAPSPFDLPELKH KTPPAPSPFDLPELKHVATEYQENKAPGKK K T P L K H 1 0 0 1 0 0 1 0 0 0 2 1 0 1 5 1 1 0 0 0 0 0 14 0 1507.7922 O95239 O95239 1181 1194 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0011401 50.284 By MS/MS 1 0.51082 0.55373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51082 0.55373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036100 2551100 1485000 0 0 0 0 0 0 4036100 2551100 1485000 0 0 0 0 0 0 0 0 0 33938 1757 35682 178220 180174;180175 180174 2 TPPGIQK AVSGKPPNGFSAIYKTPPGIQKSAVATAEA NGFSAIYKTPPGIQKSAVATAEALGLDRPA K T P Q K S 0 0 0 0 0 1 0 1 0 1 0 1 0 0 2 0 1 0 0 0 0 0 7 0 739.42284 Q6W2J9;H7BYY2 Q6W2J9 151 157 BCOR BCL-6 corepressor yes no 1 0.051274 23.972 By MS/MS 1 1.0716 0.8684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0716 0.8684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2599800 1304000 1295800 0 0 0 0 0 0 0 0 0 2599800 1304000 1295800 0 0 0 0 0 0 33939 3191 35683 178221 180176 180176 1 TPPGLQHEYAAPADYFR AQELKNAEIALRTQKTPPGLQHEYAAPADY PGLQHEYAAPADYFRILVQQFEVQLQQYRQ K T P F R I 3 1 0 1 0 1 1 1 1 0 1 0 0 1 3 0 1 0 2 0 0 0 17 0 1931.9166 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 278 294 NUPL1 Nucleoporin p58/p45 yes no 3 7.1141E-06 57.52 By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 0.86306 0.80011 35.739 6 Median 0.72328 0.70831 NaN 1 0 Median 1.0755 0.9537 NaN 1 0 Median 0.72381 0.73521 19.707 2 0 Median 1.2692 1.1457 58.522 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59862000 35306000 24557000 4193300 2559700 1633700 462240 267980 194260 51349000 30531000 20818000 3857700 1947300 1910500 0 0 0 0 0 0 33940 1247 35684 178222;178223;178224;178225;178226;178227 180177;180178;180179;180180;180181;180182 180182 6 TPPLITDYR YKEQVLEPMLNGTEKTPPLITDYREYHTDT LNGTEKTPPLITDYREYHTDTTVKFVVKMT K T P Y R E 0 1 0 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 1 0 0 0 9 0 1074.571 P11388 P11388 950 958 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0040235 61.962 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.002 0.94251 10.415 7 Median 0.9504 0.94251 NaN 1 0 Median 1.0399 0.88941 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1901 1.0492 NaN 1 0 Median 0.99989 1.0187 0.85443 2 0 Median 1.0228 0.84104 11.04 2 0 Median 66573000 34423000 32150000 2606100 1398500 1207700 4732300 2199800 2532400 0 0 0 7775900 3669300 4106600 46520000 24749000 21771000 4938900 2406600 2532300 33941 1963 35685 178228;178229;178230;178231;178232;178233;178234 180183;180184;180185;180186;180187;180188;180189 180188 7 TPPLITDYREYHTDTTVK YKEQVLEPMLNGTEKTPPLITDYREYHTDT LITDYREYHTDTTVKFVVKMTEEKLAEAER K T P V K F 0 1 0 2 0 0 1 0 1 1 1 1 0 0 2 0 5 0 2 1 0 0 18 1 2149.0691 P11388 P11388 950 967 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 8.3067E-07 81.157 By MS/MS By MS/MS By matching 4 4 3 0.86223 0.94831 10.608 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74972 0.90234 10.936 4 0 Median NaN NaN NaN 0 0 Median 0.82175 0.91027 7.6124 4 0 Median 1.172 1.0411 14.421 3 0 Median 135510000 75105000 60409000 0 0 0 0 0 0 48403000 26073000 22330000 0 0 0 85719000 48374000 37346000 1392000 657790 734220 33942 1963 35686 178235;178236;178237;178238;178239;178240;178241;178242;178243;178244;178245 180190;180191;180192;180193;180194;180195 180193 6 TPPPELLQTLTAVGGIGQLTAAK NVVTGALELLQQLFRTPPPELLQTLTAVGG TLTAVGGIGQLTAAKEESGGRSRSGSIVEL R T P A K E 3 0 0 0 0 2 1 3 0 1 4 1 0 0 3 0 4 0 0 1 0 0 23 0 2275.2787 P42858 P42858 386 408 HTT Huntingtin yes yes 3 0.065956 6.0677 By MS/MS By matching 1 1 0.69897 0.65368 13.042 2 Median 0.72329 0.71683 NaN 1 0 Median 0.67547 0.5961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2132900 1199800 933080 1395200 761150 634080 737650 438660 299000 0 0 0 0 0 0 0 0 0 0 0 0 33943 2319 35687 178246;178247 180196 180196 1 TPPQLEALQELHPYMEGAQLR ELQNRRAGPATSPPKTPPQLEALQELHPYM ALQELHPYMEGAQLREVTLALLSLPETHLV K T P L R E 2 1 0 0 0 3 3 1 1 0 4 0 1 0 3 0 1 0 1 0 0 0 21 0 2420.2158 O60287 O60287 1101 1121 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 8.3378E-07 46.027 By MS/MS By matching 1 1 0.82054 0.93103 22.358 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72275 0.79489 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93157 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median 6381500 3614900 2766700 0 0 0 0 0 0 5833700 3328900 2504800 0 0 0 547780 285960 261820 0 0 0 33944 1610 35688 178248;178249 180197;180198 180197 2 TPPSEEDSAEAER ATGKEMPQDLRSPARTPPSEEDSAEAERLK ARTPPSEEDSAEAERLKTEGNEQMKVENFE R T P E R L 2 1 0 1 0 0 4 0 0 0 0 0 0 0 2 2 1 0 0 0 0 0 13 0 1416.6005 O43765;K7EMD6 O43765 81 93 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes no 2 0.0033589 60.434 By MS/MS By MS/MS 1 1 0.73205 0.6661 16.522 2 Median 0.77494 0.74864 NaN 1 1 Median 0.69154 0.59265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2878300 1601700 1276600 2308100 1286100 1021900 570200 315510 254690 0 0 0 0 0 0 0 0 0 0 0 0 33945 1588 35689 178250;178251 180199;180200;180201;180202 180200 4 TPPSTTVGSHSPPETPVLTR KEPKEPSPKQDVVGKTPPSTTVGSHSPPET TVGSHSPPETPVLTRSSAQTSAAGATATTS K T P T R S 0 1 0 0 0 0 1 1 1 0 1 0 0 0 5 3 5 0 0 2 0 0 20 0 2060.0538 Q9ULU4 Q9ULU4 746 765 ZMYND8 Protein kinase C-binding protein 1 no no 3 1.86E-07 55.206 By MS/MS 1 1.4174 1.5584 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4174 1.5584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13821000 6472400 7348400 0 0 0 0 0 0 13821000 6472400 7348400 0 0 0 0 0 0 0 0 0 33946 4328 35690 178252 180203;180204 180204 2 TPPYADPSLQAPVR FSQADVHRQVAIVFRTPPYADPSLQAPVRV RTPPYADPSLQAPVRVSMQLRRPSDRELSE R T P V R V 2 1 0 1 0 1 0 0 0 0 1 0 0 0 4 1 1 0 1 1 0 0 14 0 1510.778 Q2TAM5;E9PKH5;A0A087X0W8;Q04206 Q2TAM5 254 267 RELA Transcription factor p65 yes no 2 3.5065E-07 115.57 By MS/MS 1 0.68308 0.64781 NaN 1 Median 0.68308 0.64781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13056000 7929400 5126900 13056000 7929400 5126900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33947 114 35691 178253 180205;180206 180205 2 TPQAPASANLVGPR SGTPPTAANYPSSSRTPQAPASANLVGPRS RTPQAPASANLVGPRSAHATAPVNIAGSRT R T P P R S 3 1 1 0 0 1 0 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 14 0 1377.7365 Q9UQ35 Q9UQ35 2329 2342 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 8.8532E-09 157.38 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 3 2 1 1 2 3 0.66511 0.59655 24.466 12 Median 0.52349 0.50219 11.889 3 2 Median 0.55742 0.45797 4.6479 2 0 Median 0.82845 0.89845 NaN 1 0 Median 0.62564 0.52561 NaN 1 0 Median 0.78631 0.80482 14.911 2 0 Median 0.8332 0.69184 9.4973 3 2 Median 96244000 57459000 38785000 36772000 23289000 13483000 20740000 12955000 7784400 3965000 2462200 1502800 671080 396680 274400 24418000 12975000 11443000 9678700 5380800 4297800 33948 4359 35692 178254;178255;178256;178257;178258;178259;178260;178261;178262;178263;178264;178265 180207;180208;180209;180210;180211;180212;180213;180214;180215;180216;180217;180218;180219 180213 13 TPQEAIMDGTEIAVSPR NASKTWELSLYELHRTPQEAIMDGTEIAVS QEAIMDGTEIAVSPRSLHSELMCPICLDML R T P P R S 2 1 0 1 0 1 2 1 0 2 0 0 1 0 2 1 2 0 0 1 0 0 17 0 1813.888 Q06587 Q06587 24 40 RING1 E3 ubiquitin-protein ligase RING1 yes yes 2;3 2.7077E-18 124.12 By MS/MS By matching 4 2 0.71621 0.72941 31.722 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71621 0.72941 22.791 4 1 Median 0.89404 0.7815 55.934 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22755000 10684000 12071000 0 0 0 0 0 0 22116000 10281000 11835000 638890 402910 235980 0 0 0 0 0 0 33949 2727 35693 178266;178267;178268;178269;178270;178271 180220;180221;180222;180223 180223 4 TPQEAITDGLEIVVSPR PLSKTWELSLYELQRTPQEAITDGLEIVVS QEAITDGLEIVVSPRSLHSELMCPICLDML R T P P R S 1 1 0 1 0 1 2 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 17 0 1823.9629 Q99496;X6RFN3 Q99496 27 43 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2;3 2.6204E-10 100.55 By MS/MS By matching By matching 2 1 1 0.79574 0.7649 12.267 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6994 0.75866 0.19074 2 0 Median 0.90499 0.77015 NaN 1 0 Median 0.96214 0.97408 NaN 1 0 Median NaN NaN NaN 0 0 Median 6577700 3781600 2796100 0 0 0 0 0 0 6071800 3538700 2533100 389360 175130 214220 116510 67740 48773 0 0 0 33950 3748 35694 178272;178273;178274;178275 180224;180225;180226;180227 180224 4 TPQEWAPQTAR AHDKQPSVLSSGYQKTPQEWAPQTARIRTR GYQKTPQEWAPQTARIRTRMQTSSPGKSSI K T P A R I 2 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 2 1 0 0 0 0 11 0 1283.6258 A0A0A0MSK5;Q5JTV8;H0YDU3;H0YD16;H0Y4R4;J3KN66 J3KN66 287 297 TOR1AIP1 Torsin-1A-interacting protein 1 no no 2 0.020942 55.567 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33951 182;1302 35695 178276;178277 180228;180229 180228 2 TPQGAVPAYLLDR KMHEKRNTKQKNDEKTPQGAVPAYLLDREG EKTPQGAVPAYLLDREGQSRAKVLSNMIKQ K T P D R E 2 1 0 1 0 1 0 1 0 0 2 0 0 0 2 0 1 0 1 1 0 0 13 0 1399.746 O95478;A0A0A0MQZ6 O95478 81 93 NSA2 Ribosome biogenesis protein NSA2 homolog yes no 2 7.4802E-07 103.34 By MS/MS 2 0.64407 0.64802 4.8357 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64407 0.64802 4.8357 2 0 Median NaN NaN NaN 0 0 Median 27082000 15268000 11814000 0 0 0 0 0 0 0 0 0 0 0 0 27082000 15268000 11814000 0 0 0 33952 1775 35696 178278;178279 180230;180231;180232 180230 3 TPQKEESDVPQWSSQFLQK LQWLATKSPKKEDSKTPQKEESDVPQWSSQ EESDVPQWSSQFLQKSPLPTKRGT______ K T P Q K S 0 0 0 1 0 4 2 0 0 0 1 2 0 1 2 3 1 1 0 1 0 0 19 1 2261.0964 D6R9T3;E7EMP6;Q96FZ2 D6R9T3 255 273 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein yes no 3 1.1797E-06 52.045 By MS/MS 1 0.78903 0.85983 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78903 0.85983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7693600 4190600 3502900 0 0 0 0 0 0 7693600 4190600 3502900 0 0 0 0 0 0 0 0 0 33953 807 35697 178280 180233 180233 1 TPQNLHAFLISVPGSFAESGATK NQEVVRLYLAVLSDRTPQNLHAFLISVPGS LISVPGSFAESGATKNLLDSMARNVVLDAL R T P T K N 3 0 1 0 0 1 1 2 1 1 2 1 0 2 2 3 2 0 0 1 0 0 23 0 2371.2172 H0Y6I6;Q96ME1 H0Y6I6 142 164 FBXL18 F-box/LRR-repeat protein 18 yes no 3 8.2802E-05 31.473 By MS/MS By matching 1 1 1.2104 1.1651 14.696 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2149 1.2926 NaN 1 0 Median 1.2059 1.0501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3221600 1600000 1621600 0 0 0 0 0 0 3078900 1539600 1539300 142710 60401 82305 0 0 0 0 0 0 33954 1157 35698 178281;178282 180234 180234 1 TPQQLWYTHEK LIQNAKKSDIPEKPKTPQQLWYTHEKKVYL EKPKTPQQLWYTHEKKVYLKVRPDATTKEV K T P E K K 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 2 1 1 0 0 0 11 0 1429.699 P17480;E9PKP7 P17480 201 211 UBTF Nucleolar transcription factor 1 yes no 2;3 0.00016796 93.667 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 2 0.89869 0.94402 28.308 9 Median NaN NaN NaN 0 0 Median 0.68462 0.618 NaN 1 0 Median 0.77818 0.83767 17.642 2 0 Median 0.75517 0.65598 51.48 2 0 Median 0.95778 0.97652 8.7562 2 1 Median 1.2395 1.0187 5.1378 2 0 Median 58757000 29004000 29754000 0 0 0 323920 195840 128080 15943000 8474000 7468900 2946500 1341700 1604800 31119000 15477000 15643000 8424800 3515500 4909300 33955 2040 35699 178283;178284;178285;178286;178287;178288;178289;178290;178291;178292 180235;180236;180237;180238;180239;180240;180241;180242;180243;180244 180244 10 TPQQLWYTHEKK LIQNAKKSDIPEKPKTPQQLWYTHEKKVYL KPKTPQQLWYTHEKKVYLKVRPDATTKEVK K T P K K V 0 0 0 0 0 2 1 0 1 0 1 2 0 0 1 0 2 1 1 0 0 0 12 1 1557.794 P17480;E9PKP7 P17480 201 212 UBTF Nucleolar transcription factor 1 yes no 3 0.0050615 32.275 By MS/MS By MS/MS 1 2 0.96325 0.92741 10.929 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8281 0.92741 NaN 1 0 Median 1.0774 0.9653 15.105 2 0 Median 13250000 6696000 6553900 0 0 0 0 0 0 0 0 0 0 0 0 8333400 4360100 3973400 4916400 2335900 2580500 33956 2040 35700 178293;178294;178295 180245;180246 180246 2 TPQQTSASQQMLNFPDK VLADTPSGLVPLQPKTPQQTSASQQMLNFP QQTSASQQMLNFPDKGKEKPTDMQNFGLRT K T P D K G 1 0 1 1 0 4 0 0 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1919.9047 Q8TAQ2 Q8TAQ2 548 564 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2 0.0052142 30.059 By MS/MS By matching 1 2 0.83438 0.76009 11.274 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70082 0.76009 NaN 1 0 Median 0.95896 0.83646 13.896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6090200 3787800 2302300 0 0 0 0 0 0 4524800 3028400 1496400 1565400 759450 805920 0 0 0 0 0 0 33957 3455 35701 178296;178297;178298 180247 180247 1 TPQQTSASQQMLNFPDKGK VLADTPSGLVPLQPKTPQQTSASQQMLNFP TSASQQMLNFPDKGKEKPTDMQNFGLRTDM K T P G K E 1 0 1 1 0 4 0 1 0 0 1 2 1 1 2 2 2 0 0 0 0 0 19 1 2105.0212 Q8TAQ2 Q8TAQ2 548 566 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 3 2.7667E-18 140.28 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.70288 0.75129 11.722 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57216 0.66791 7.4364 2 0 Median 0.88712 0.837 3.4267 2 0 Median 0.65981 0.7084 8.3114 2 0 Median 0.92239 0.83454 NaN 1 0 Median 101930000 70575000 31356000 0 0 0 0 0 0 74632000 55805000 18828000 12881000 6241300 6640000 13412000 8065000 5347400 1005700 464180 541540 33958 3455 35702;35703 178299;178300;178301;178302;178303;178304;178305 180248;180249;180250;180251;180252;180253;180254;180255;180256;180257;180258;180259 180252 1737 12 TPQVIGVMQSQNSSAGNR EQPPLPQQTQPPAKRTPQVIGVMQSQNSSA VIGVMQSQNSSAGNRGPRPLEQVTCYKCGE R T P N R G 1 1 2 0 0 3 0 2 0 1 0 0 1 0 1 3 1 0 0 2 0 0 18 0 1872.9112 C9JEV9;O95639;B7Z7B0;H7C419 C9JEV9 160 177 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes no 2;3 8.037E-99 215.51 By MS/MS By MS/MS 3 1 0.77684 0.74637 10.076 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76115 0.73129 2.4396 3 3 Median 1.0896 0.90238 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46759000 24947000 21812000 0 0 0 0 0 0 44423000 23800000 20623000 2335900 1147300 1188600 0 0 0 0 0 0 33959 693 35704 178306;178307;178308;178309 180260;180261;180262;180263 180261 4 TPSAAYLWVGTGASEAEK PKAGALNSNDAFVLKTPSAAYLWVGTGASE AAYLWVGTGASEAEKTGAQELLRVLRAQPV K T P E K T 4 0 0 0 0 0 2 2 0 0 1 1 0 0 1 2 2 1 1 1 0 0 18 0 1836.8894 A0A0A0MS51;A0A0A0MT01;P06396 A0A0A0MS51 564 581 GSN Gelsolin yes no 2 4.7516E-06 76.522 By MS/MS By matching 1 1 1.023 0.92984 10.931 2 Median 0.93922 0.86068 NaN 1 0 Median 1.1143 1.0046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8199900 4190500 4009400 7952100 4083300 3868900 247770 107220 140550 0 0 0 0 0 0 0 0 0 0 0 0 + 33960 176 35705 178310;178311 180264;180265 180265 2 TPSALAILENANVLAR ADFAKWRCVLKISERTPSALAILENANVLA PSALAILENANVLARYA_____________ R T P A R Y 4 1 2 0 0 0 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 16 0 1651.9257 J3KSV6;J3QKP5;A8MVZ9;P09972;K7EKH5 J3KSV6 158 173 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 2 0.0073173 42.041 By MS/MS By MS/MS 1 2 1.0555 0.98302 5.9075 2 Median 0.94881 0.9428 NaN 1 0 Median 1.1741 1.025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11945000 5954200 5991000 4304000 2218500 2085600 7641100 3735700 3905400 0 0 0 0 0 0 0 0 0 0 0 0 33961 546 35706 178312;178313;178314 180266;180267 180266 2 TPSASGLLVLASAMR SPEVFLKLILSTLKKTPSASGLLVLASAMR TPSASGLLVLASAMRGCPREALQPHLAAIA K T P M R G 3 1 0 0 0 0 0 1 0 0 3 0 1 0 1 3 1 0 0 1 0 0 15 0 1472.8021 Q86Y56;H0Y650 Q86Y56 447 461 DNAAF5 Dynein assembly factor 5, axonemal yes no 2 0.00066957 47.288 By MS/MS By MS/MS 1 1 0.9045 0.83852 17.777 2 Median 0.9585 0.95084 NaN 1 0 Median 0.85354 0.73947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5684300 3048700 2635600 1431900 701300 730630 4252400 2347400 1905000 0 0 0 0 0 0 0 0 0 0 0 0 33962 3305 35707 178315;178316 180268;180269;180270 180269 3 TPSEALWKPTHEDSK FKLFLLRILYQSMQKTPSEALWKPTHEDSK TPSEALWKPTHEDSKILLVDSPGMGNADDE K T P S K I 1 0 0 1 0 0 2 0 1 0 1 2 0 0 2 2 2 1 0 0 0 0 15 1 1724.837 Q9UKN8 Q9UKN8 591 605 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 3;4 0.003774 27.85 By MS/MS 2 0.63862 0.72989 11.731 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63862 0.72989 11.731 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10971000 6883800 4087300 0 0 0 0 0 0 10971000 6883800 4087300 0 0 0 0 0 0 0 0 0 33963 4314 35708 178317;178318 180271;180272 180271 2 TPSGEFLER PKEENAEPVSKLRIRTPSGEFLERRFLASN SKLRIRTPSGEFLERRFLASNKLQIVFDFV R T P E R R 0 1 0 0 0 0 2 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 9 0 1034.5033 Q9UNN5;B1ANM7;B3KT28 Q9UNN5 580 588 FAF1 FAS-associated factor 1 yes no 2 0.00094944 88.948 By MS/MS By MS/MS 1 1 0.8685 0.79931 1.75 2 Median 0.84039 0.80926 NaN 1 0 Median 0.89755 0.78948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5622400 3215900 2406400 4166800 2394500 1772400 1455600 821470 634090 0 0 0 0 0 0 0 0 0 0 0 0 33964 575 35709 178319;178320 180273;180274 180273 2 TPSIQPSLLPHAAPFAK DEAVVQAPRHAPVVRTPSIQPSLLPHAAPF SIQPSLLPHAAPFAKSHLVHGSSPGVMGTS R T P A K S 3 0 0 0 0 1 0 0 1 1 2 1 0 1 4 2 1 0 0 0 0 0 17 0 1773.9778 A0A494C1F2;P35658;A0A0A0MSW3;H0YF36 A0A494C1F2 1009 1025 NUP214 Nuclear pore complex protein Nup214 yes no 2;3 2.2439E-05 67.153 By MS/MS By matching 3 1 0.62975 0.6912 28.42 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58066 0.64669 10.157 3 1 Median NaN NaN NaN 0 0 Median 1.0772 1.1389 NaN 1 0 Median NaN NaN NaN 0 0 Median 24395000 15652000 8742900 0 0 0 0 0 0 22036000 14457000 7579300 0 0 0 2359000 1195500 1163500 0 0 0 33965 467 35710 178321;178322;178323;178324 180275;180276;180277 180277 3 TPSLTVFLLGQSAR VPRLKELINISKKPKTPSLTVFLLGQSARD KTPSLTVFLLGQSARDAERAKDILCRLEHT K T P A R D 1 1 0 0 0 1 0 1 0 0 3 0 0 1 1 2 2 0 0 1 0 0 14 0 1488.83 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1136 1149 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 5.7388E-05 91.855 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 0.98472 1.0939 23.192 7 Median 0.92833 0.92866 NaN 1 0 Median 1.5566 1.3287 NaN 1 0 Median 1.0008 1.1118 2.2953 2 2 Median NaN NaN NaN 0 0 Median 0.71903 0.75645 4.8526 2 0 Median 1.5229 1.2692 NaN 1 0 Median 17236000 7716000 9520500 2119300 1111700 1007600 7116800 2611200 4505600 5859400 2741300 3118000 0 0 0 2061400 1215900 845500 79698 35965 43733 33966 486 35711 178325;178326;178327;178328;178329;178330;178331 180278;180279;180280;180281;180282;180283;180284;180285 180281 8 TPSNELYKPLR TDNDLRAKFKERWQRTPSNELYKPLRAEGT RWQRTPSNELYKPLRAEGTNFRTVLDKAVQ R T P L R A 0 1 1 0 0 0 1 0 0 0 2 1 0 0 2 1 1 0 1 0 0 0 11 1 1316.7089 Q8WUM4 Q8WUM4 479 489 PDCD6IP Programmed cell death 6-interacting protein yes yes 3 0.0016655 62.924 By matching By MS/MS By matching By MS/MS By MS/MS 2 2 1 1 2 0.86062 0.83007 43.174 7 Median 0.65421 0.6745 40.032 2 0 Median 0.55203 0.53726 61.522 2 1 Median NaN NaN NaN 0 0 Median 1.2921 1.2409 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98167 0.87657 18.162 2 0 Median 14436000 7681600 6754900 5713100 3375400 2337700 5173200 2677400 2495700 0 0 0 630430 264520 365910 0 0 0 2919800 1364200 1555600 33967 3493 35712 178332;178333;178334;178335;178336;178337;178338;178339 180286;180287;180288 180287 2 TPSNGAEGLTPR QVVQTPNTVLSTPFRTPSNGAEGLTPRSGT PFRTPSNGAEGLTPRSGTTPKPVINSTPGR R T P P R S 1 1 1 0 0 0 1 2 0 0 1 0 0 0 2 1 2 0 0 0 0 0 12 0 1198.5942 Q99459 Q99459 415 426 CDC5L Cell division cycle 5-like protein yes yes 2 0.013861 35.541 By matching By MS/MS 1 1 0.61235 0.58584 6.0927 2 Median NaN NaN NaN 0 0 Median 0.71394 0.61163 NaN 1 0 Median 0.52521 0.56114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2145200 1322200 822990 0 0 0 1015400 598340 417070 1129800 723870 405910 0 0 0 0 0 0 0 0 0 33968 3745 35713 178340;178341 180289 180289 1 TPSNLAAAR EIEHHEMAKSSLRMRTPSNLAAARLTGPSH SSLRMRTPSNLAAARLTGPSHSKGSLGEER R T P A R L 3 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 9 0 899.48248 Q86U86;E7EVG2;H0Y5B5 Q86U86 301 309 PBRM1 Protein polybromo-1 yes no 2 0.0031588 67.032 By MS/MS By matching 1 1 0.82981 0.81858 8.929 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69155 0.7685 NaN 1 0 Median 0.99572 0.87193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1578800 879820 698970 0 0 0 0 0 0 1308000 755500 552500 270780 124320 146470 0 0 0 0 0 0 33969 3273 35714 178342;178343 180290;180291 180290 2 TPSPAAEDAREPEAK RSPQTLAPVGEDAMKTPSPAAEDAREPEAK TPSPAAEDAREPEAKGNS____________ K T P A K G 4 1 0 1 0 0 3 0 0 0 0 1 0 0 3 1 1 0 0 0 0 0 15 1 1567.7478 Q92797 Q92797 1257 1271 SYMPK Symplekin yes yes 3 0.06166 11.768 By matching By MS/MS 1 2 0.66928 0.64319 1.212 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5513 0.62983 NaN 1 0 Median 0.66928 0.64319 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2084300 1183800 900550 0 0 0 0 0 0 1250900 724310 526590 833430 459480 373950 0 0 0 0 0 0 33970 3558 35715 178344;178345;178346 180292 180292 1 TPSSDVLVFDYTK RARYMPQNPHIIATKTPSSDVLVFDYTKHP TKTPSSDVLVFDYTKHPAKPDPSGECNPDL K T P T K H 0 0 0 2 0 0 0 0 0 0 1 1 0 1 1 2 2 0 1 2 0 0 13 0 1470.7242 Q09028;H0YF10;Q16576;E9PC52;Q5JP01 Q16576 143 155 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 4.832E-07 147.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 1 6 1 0.89584 0.85476 54.981 15 Median 0.93303 0.86688 7.2807 2 0 Median 0.73166 0.65418 34.922 2 0 Median 0.86779 0.84131 105.79 4 0 Median 1.015 0.91579 NaN 1 0 Median 0.8883 0.88925 17.267 5 1 Median 1.0371 0.85408 NaN 1 0 Median 533990000 276110000 257880000 46982000 24368000 22614000 27217000 13742000 13475000 323600000 168820000 154780000 37534000 18489000 19044000 94550000 48627000 45924000 4108600 2067200 2041500 33971 2746;2990 35716 178347;178348;178349;178350;178351;178352;178353;178354;178355;178356;178357;178358;178359;178360;178361;178362;178363 180293;180294;180295;180296;180297;180298;180299;180300;180301;180302;180303;180304;180305;180306;180307;180308;180309;180310;180311;180312;180313 180309 21 TPTAPAVNLAGAR RTAVAPSAVNLADPRTPTAPAVNLAGARTP PRTPTAPAVNLAGARTPAALAALSLTGSGT R T P A R T 4 1 1 0 0 0 0 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 13 0 1237.6779 Q9UQ35 Q9UQ35 2289 2301 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 1.266E-24 168.83 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 2 2 1 3 2 0.79011 0.72536 54.07 12 Median 0.68514 0.6633 70.312 3 1 Median 0.60986 0.52007 NaN 1 0 Median 0.45862 0.54321 92.746 2 1 Median 0.72789 0.6326 NaN 1 0 Median 1.0134 1.0333 14.833 3 0 Median 1.0598 0.89757 24.472 2 0 Median 125740000 70292000 55447000 55362000 32456000 22906000 3964000 2598300 1365700 14213000 8808900 5403800 600110 322750 277360 46117000 23123000 22994000 5483400 2983900 2499500 33972 4359 35717 178364;178365;178366;178367;178368;178369;178370;178371;178372;178373;178374;178375;178376 180314;180315;180316;180317;180318;180319;180320;180321;180322;180323;180324;180325 180322 12 TPTAVVAPVEK KAPTKILKPGSTALKTPTAVVAPVEKTISS TALKTPTAVVAPVEKTISSEKASSTPSSET K T P E K T 2 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 2 0 0 3 0 0 11 0 1110.6285 J3KP58;P30622;F5H6A0;F5H1T5;F5H367;F5H270 J3KP58 25 35 CLIP1 CAP-Gly domain-containing linker protein 1 yes no 2 0.049023 63.184 By MS/MS 1 0.97109 0.85448 NaN 1 Median NaN NaN NaN 0 0 Median 0.97109 0.85448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1635100 742500 892600 0 0 0 1635100 742500 892600 0 0 0 0 0 0 0 0 0 0 0 0 33973 1308 35718 178377 180326 180326 0 TPTEALASFDYIVR ADDWLVHLISPNVYRTPTEALASFDYIVRE RTPTEALASFDYIVREGKFGAVEGAVAKYM R T P V R E 2 1 0 1 0 0 1 0 0 1 1 0 0 1 1 1 2 0 1 1 0 0 14 0 1581.8039 Q9H7Z7;A6NHH0;X6RJ95 Q9H7Z7 253 266 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes no 2 0.00078971 60.434 By MS/MS 1 0.92211 0.86065 NaN 1 Median 0.92211 0.86065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7438600 3645900 3792800 7438600 3645900 3792800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33974 3985 35719 178378 180327;180328;180329 180328 3 TPTLQPTPEVHNGLR EDDDDQFSEEGDETKTPTLQPTPEVHNGLR TPTLQPTPEVHNGLRVTSVRKPAVNIKQGE K T P L R V 0 1 1 0 0 1 1 1 1 0 2 0 0 0 3 0 3 0 0 1 0 0 15 0 1658.874 O75152;E9PQ61;E9PBY7;A0A1W2PPR9;A0A1B0GTU1;A0A494C0C4 O75152 179 193 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 0.00075933 37.654 By MS/MS 1 0.62576 0.672 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62576 0.672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3299000 2162400 1136600 0 0 0 0 0 0 3299000 2162400 1136600 0 0 0 0 0 0 0 0 0 33975 1650 35720 178379 180330 180330 1 TPTLYLDFK ISGEALGIKSKVYTRTPTLYLDFKLDPGAK SKVYTRTPTLYLDFKLDPGAKHSQPIPKGW R T P F K L 0 0 0 1 0 0 0 0 0 0 2 1 0 1 1 0 2 0 1 0 0 0 9 0 1096.5805 O00625 O00625 167 175 PIR Pirin yes yes 2 0.0008527 94.302 By MS/MS By matching 1 1 0.78487 0.75232 4.847 2 Median 0.82701 0.77855 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74489 0.72697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7522100 4289400 3232700 6414400 3634300 2780100 0 0 0 1107800 655060 452690 0 0 0 0 0 0 0 0 0 33976 1474 35721 178380;178381 180331;180332 180332 2 TPTPAGPTIMPLIR IITGPAPVLPPAALRTPTPAGPTIMPLIRQ RTPTPAGPTIMPLIRQIQTAVMPNGTPHPT R T P I R Q 1 1 0 0 0 0 0 1 0 2 1 0 1 0 4 0 3 0 0 0 0 0 14 0 1463.817 Q96PU8;H0YG47;H0YGD6 Q96PU8 243 256 QKI Protein quaking yes no 2 1.1647E-06 106.29 By MS/MS By matching By matching 3 1 1 0.43262 0.46827 7.7386 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43059 0.46827 2.1511 3 2 Median 0.50856 0.44823 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61699 0.54391 NaN 1 0 Median 41412000 28508000 12905000 0 0 0 0 0 0 39544000 27150000 12394000 1691800 1256200 435620 0 0 0 176340 101090 75252 33977 3715 35722;35723 178382;178383;178384;178385;178386 180333;180334;180335 180333 1815 3 TPTPSTPGDTQPNTPAPVPPAEDGIK EENKKMSQPGSPSPKTPTPSTPGDTQPNTP PNTPAPVPPAEDGIKIEENSLKEEESIEGE K T P I K I 2 0 1 2 0 1 1 2 0 1 0 1 0 0 8 1 5 0 0 1 0 0 26 0 2584.2657 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1540 1565 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 2.6494E-19 63.906 By MS/MS By matching 1 2 0.17733 0.19543 88.811 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17733 0.19543 NaN 1 0 Median 0.28633 0.28492 121.77 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21633000 18841000 2792100 0 0 0 0 0 0 17497000 15301000 2195900 4135900 3539700 596210 0 0 0 0 0 0 33978 246 35724 178387;178388;178389 180336 180336 1 TPTQLEGATR CASCWIYWKKYGGLKTPTQLEGATRGTTEP YGGLKTPTQLEGATRGTTEPHSRGHLSRPE K T P T R G 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 10 0 1072.5513 O94776 O94776 406 415 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.00040727 103.56 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1.0104 0.91657 26.031 7 Median NaN NaN NaN 0 0 Median 0.86229 0.74344 NaN 1 1 Median 0.89218 0.91657 NaN 1 0 Median 1.139 0.97881 NaN 1 1 Median 1.1231 1.194 NaN 1 0 Median 1.0104 0.82456 37.745 3 0 Median 14465000 7534300 6930900 0 0 0 1382600 681370 701200 6994900 3805200 3189700 986930 434220 552710 2019400 1109400 910030 3081400 1504100 1577300 33979 1723 35725 178390;178391;178392;178393;178394;178395;178396 180337;180338;180339;180340;180341;180342;180343;180344 180337 8 TPTQTNGSNVPFKPR VEGPNNNNPQTSAVRTPTQTNGSNVPFKPR TPTQTNGSNVPFKPRGREFSFEAWNAKITD R T P P R G 0 1 2 0 0 1 0 1 0 0 0 1 0 1 3 1 3 0 0 1 0 0 15 1 1642.8427 P78347;A0A494C1K3 P78347 703 717 GTF2I General transcription factor II-I yes no 3 0.023052 30.543 By MS/MS 1 2.5281 2.8654 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5281 2.8654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11400000 1765000 9634700 0 0 0 0 0 0 11400000 1765000 9634700 0 0 0 0 0 0 0 0 0 33980 2642 35726 178397 180345 180345 1 TPTSSPASSPLVAK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK KTPTSSPASSPLVAKKPLTTTPRRRPRAMD K T P A K K 2 0 0 0 0 0 0 0 0 0 1 1 0 0 3 4 2 0 0 1 0 0 14 0 1341.714 Q14684 Q14684 728 741 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.00085939 57.836 By MS/MS By MS/MS 1 2 1.0762 0.87361 13.791 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64868 0.71112 NaN 1 0 Median 1.0979 0.89847 3.9693 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10270000 5967300 4302800 0 0 0 0 0 0 7515800 4571700 2944100 2754300 1395600 1358600 0 0 0 0 0 0 33981 2890 35727 178398;178399;178400 180346;180347;180348;180349 180347 4 TPTTQETDGFQVK KDLYGPDNHLVEWHRTPTTQETDGFQVKRP HRTPTTQETDGFQVKRPGDLSVRCTLLLML R T P V K R 0 0 0 1 0 2 1 1 0 0 0 1 0 1 1 0 4 0 0 1 0 0 13 0 1450.694 Q6STE5 Q6STE5 229 241 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes yes 2 0.0010284 60.518 By MS/MS By matching 1 1 0.97775 0.91616 38.804 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68391 0.69632 NaN 1 0 Median 1.3978 1.2054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4768900 2418600 2350300 0 0 0 0 0 0 3591000 2008500 1582400 1177900 410020 767850 0 0 0 0 0 0 33982 3183 35728 178401;178402 180350;180351 180351 2 TPTYREPVSDYQVLR PSHFPEFPDPHTYIKTPTYREPVSDYQVLR TPTYREPVSDYQVLREKAASQRRDVERALT K T P L R E 0 2 0 1 0 1 1 0 0 0 1 0 0 0 2 1 2 0 2 2 0 0 15 1 1822.9214 Q7Z7C8;B4DZU5 Q7Z7C8 162 176 TAF8 Transcription initiation factor TFIID subunit 8 yes no 3 0.00010325 51.546 By MS/MS By matching 1 1 0.97281 0.92403 5.0023 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93401 0.9573 NaN 1 0 Median 1.0132 0.89192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10505000 5480200 5024800 0 0 0 0 0 0 9203200 4759700 4443500 1301800 720510 581310 0 0 0 0 0 0 33983 3255 35729 178403;178404 180352 180352 1 TPVANQSSNLTATQMSFPVQGVHTVAQTVSR GIPHGSQTIGNHFQRTPVANQSSNLTATQM FPVQGVHTVAQTVSRIPQNPSPHTHQQQNA R T P S R I 3 1 2 0 0 4 0 1 1 0 1 0 1 1 2 4 5 0 0 5 0 0 31 0 3255.6306 Q68CP9;F8WCU9;F8W108 Q68CP9 653 683 ARID2 AT-rich interactive domain-containing protein 2 yes no 3 3.9136E-22 73.317 By MS/MS By matching By matching 2 1 1 0.64225 0.68984 8.7415 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58965 0.64554 12.106 2 0 Median 0.82381 0.72121 NaN 1 0 Median 0.64501 0.6767 NaN 1 0 Median NaN NaN NaN 0 0 Median 28996000 17492000 11503000 0 0 0 0 0 0 26324000 16175000 10149000 316150 161870 154280 2356000 1155800 1200300 0 0 0 33984 3122 35730 178405;178406;178407;178408 180353;180354;180355;180356 180354 4 TPVEASHPVENASVPR ATILAGTANVKVGSRTPVEASHPVENASVP PVEASHPVENASVPRPSSHFVRRKKSEPDD R T P P R P 2 1 1 0 0 0 2 0 1 0 0 0 0 0 3 2 1 0 0 3 0 0 16 0 1688.8482 Q8TBA6 Q8TBA6 90 105 GOLGA5 Golgin subfamily A member 5 yes yes 3 0.02653 16.306 By MS/MS 1 0.72676 0.66125 NaN 1 Median NaN NaN NaN 0 0 Median 0.72676 0.66125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 761890 439550 322350 0 0 0 761890 439550 322350 0 0 0 0 0 0 0 0 0 0 0 0 33985 3459 35731 178409 180357 180357 1 TPVEEVPAAIAPFQGR YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG PVEEVPAAIAPFQGRVLIGVGKLLRVYDLG K T P G R V 3 1 0 0 0 1 2 1 0 1 0 0 0 1 3 0 1 0 0 2 0 0 16 0 1680.8835 Q15393 Q15393 943 958 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 2.899E-47 226.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 6 2 2 2 0.64981 0.63416 9.9095 20 Median 0.56633 0.54073 16.376 4 0 Median 0.66244 0.55959 6.1192 4 0 Median 0.61198 0.65328 4.1169 6 0 Median 0.74894 0.65485 3.3471 2 0 Median 0.65541 0.68328 0.53451 2 0 Median 0.73484 0.62546 6.4312 2 0 Median 215900000 129500000 86405000 46928000 27982000 18946000 7033600 4121700 2911800 144840000 87263000 57576000 3235600 1828300 1407400 13172000 7918300 5253300 693030 382150 310880 33986 2946 35732 178410;178411;178412;178413;178414;178415;178416;178417;178418;178419;178420;178421;178422;178423;178424;178425;178426;178427;178428;178429 180358;180359;180360;180361;180362;180363;180364;180365;180366;180367;180368;180369;180370;180371;180372;180373;180374;180375;180376;180377;180378;180379;180380;180381;180382 180375 25 TPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K T P H R I 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1246.667 P60866;E5RJX2;E5RIP1 P60866 9 19 RPS20 40S ribosomal protein S20 yes no 2;3 5.701E-22 201.58 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 4 2 3 1 0.84419 0.75459 58.719 20 Median 0.60137 0.57012 56.043 4 2 Median 0.68579 0.57109 80.88 6 3 Median 0.89127 0.89859 37.49 4 0 Median 0.98357 0.7723 2.688 2 0 Median 0.85069 0.89894 58.593 3 1 Plateau 1.0167 0.792 NaN 1 0 Median 1197600000 688600000 509030000 407340000 259710000 147630000 585880000 322400000 263480000 170820000 87914000 82903000 15465000 7631300 7833700 17662000 10717000 6945000 464070 220730 243350 33987 2530 35733 178430;178431;178432;178433;178434;178435;178436;178437;178438;178439;178440;178441;178442;178443;178444;178445;178446;178447;178448;178449 180383;180384;180385;180386;180387;180388;180389;180390;180391;180392;180393;180394;180395;180396;180397;180398;180399;180400;180401;180402;180403;180404;180405;180406;180407;180408;180409;180410;180411;180412;180413;180414;180415;180416 180409 33 TPVEVPVGGFK EELYSELQARETFEKTPVEVPVGGFKGRTV TFEKTPVEVPVGGFKGRTVTVWELISSEYF K T P F K G 0 0 0 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 0 3 0 0 11 0 1128.6179 Q15149;H0YDN1 Q15149 3374 3384 PLEC Plectin yes no 2 0.0001742 112.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 0.7854 0.8191 27.582 7 Median 1.0684 1.0728 NaN 1 1 Median 1.5031 1.3305 NaN 1 1 Median 0.87224 0.92961 NaN 1 0 Median 0.77179 0.74787 NaN 1 0 Median 0.78249 0.8191 NaN 1 0 Median 0.74918 0.63313 4.7032 2 0 Median 91858000 46520000 45337000 46292000 22416000 23876000 2274300 1033200 1241100 31167000 16358000 14809000 2970900 1631500 1339500 6651500 3660600 2990900 2502000 1420800 1081300 33988 2933 35734 178450;178451;178452;178453;178454;178455;178456 180417;180418;180419;180420;180421;180422;180423;180424;180425;180426;180427 180418 11 TPVFIFER VCIETAKRYNLDDYRTPVFIFERLCSIIYP YNLDDYRTPVFIFERLCSIIYPEENEVTEF R T P E R L 0 1 0 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 8 0 1007.544 Q5T4S7;X6R960 Q5T4S7 4327 4334 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0038087 85.212 By MS/MS By matching By matching By matching 2 2 1 1 1.0119 0.90606 14.236 6 Median 1.0453 1.0461 21.624 2 0 Median 1.0491 0.90606 0.31753 2 0 Median 1.0034 1.1252 NaN 1 0 Median 1.0017 0.86829 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8796400 4517200 4279300 5846800 3030400 2816300 2053300 1047100 1006100 827610 400380 427230 68781 39247 29534 0 0 0 0 0 0 33989 3089 35735 178457;178458;178459;178460;178461;178462 180428;180429 180428 2 TPVGFIGLGNMGNPMAK AGSFAAVCSRSVASKTPVGFIGLGNMGNPM VGFIGLGNMGNPMAKNLMKHGYPLIIYDVF K T P A K N 1 0 2 0 0 0 0 4 0 1 1 1 2 1 2 0 1 0 0 1 0 0 17 0 1702.8535 P31937 P31937 40 56 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial yes yes 2 0.00029525 45.879 By MS/MS 1 0.6338 0.57567 NaN 1 Median 0.6338 0.57567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21743000 12925000 8818600 21743000 12925000 8818600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33990 2206 35736 178463 180430;180431 180430 2 TPVIDADKPVSSQLR IHYGVKSNSLAFIKRTPVIDADKPVSSQLR TPVIDADKPVSSQLRVLTLSEDSPYETLHS R T P L R V 1 1 0 2 0 1 0 0 0 1 1 1 0 0 2 2 1 0 0 2 0 0 15 1 1624.8784 Q14204 Q14204 122 136 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 8.944E-72 250.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 2 0.74257 0.7391 16.661 15 Median 0.75051 0.79859 20.28 3 0 Plateau 0.80821 0.7391 5.6422 3 0 Median 0.73532 0.86973 16.559 4 1 Linear 0.88162 0.8212 8.0689 3 0 Median NaN NaN NaN 0 0 Median 0.69684 0.60996 32.6 2 0 Median 493020000 273230000 219790000 154110000 85787000 68325000 143770000 74893000 68879000 159330000 93546000 65783000 33842000 18043000 15799000 0 0 0 1964400 956780 1007600 33991 2865 35737 178464;178465;178466;178467;178468;178469;178470;178471;178472;178473;178474;178475;178476;178477;178478 180432;180433;180434;180435;180436;180437;180438;180439;180440;180441;180442;180443;180444;180445;180446;180447;180448;180449;180450;180451;180452;180453 180435 22 TPVIVTLK GVPMEIVLNKESRRKTPVIVTLKENERFFG NKESRRKTPVIVTLKENERFFGDSAASMAI K T P L K E 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 2 0 0 2 0 0 8 0 869.5586 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06;A0A087WW13;A0A087X214 A0A087X054 68 75 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.019541 47.082 By MS/MS 1 1.2431 1.0589 NaN 1 Median NaN NaN NaN 0 0 Median 1.2431 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5551300 2404300 3147000 0 0 0 5551300 2404300 3147000 0 0 0 0 0 0 0 0 0 0 0 0 33992 101 35738 178479 180454;180455 180455 2 TPVKEPNSENVDISSGGGVTGWK IEKAFLTLAEDILRKTPVKEPNSENVDISS ENVDISSGGGVTGWKSKCC___________ K T P W K S 0 0 2 1 0 0 2 4 0 1 0 2 0 0 2 3 2 1 0 3 0 0 23 1 2357.1499 P61026 P61026 174 196 RAB10 Ras-related protein Rab-10 yes yes 3 3.5637E-23 98.3 By MS/MS By MS/MS 1 1 0.8769 0.8451 13.765 2 Median 0.75477 0.76672 NaN 1 0 Median 1.0188 0.93149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22162000 11225000 10937000 17966000 9321800 8644200 4196400 1903400 2293000 0 0 0 0 0 0 0 0 0 0 0 0 33993 2540 35739 178480;178481 180456;180457;180458;180459 180457 4 TPVLFDIYEIK ELSGNFEKTILALMKTPVLFDIYEIKEAIK ALMKTPVLFDIYEIKEAIKGVGTDEACLIE K T P I K E 0 0 0 1 0 0 1 0 0 2 1 1 0 1 1 0 1 0 1 1 0 0 11 0 1336.7279 P50995 P50995 272 282 ANXA11 Annexin A11 yes yes 2 0.00015601 96.143 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.89854 0.85139 20.309 6 Median 0.75113 0.717 9.7381 2 0 Median 1.1667 0.98907 NaN 1 0 Median 1.0061 1.0352 13.093 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88548 0.73389 NaN 1 0 Median 27426000 13280000 14146000 12209000 6559700 5649200 10595000 4650900 5944200 4180100 1855000 2325100 0 0 0 0 0 0 441930 214500 227430 33994 2425 35740 178482;178483;178484;178485;178486;178487 180460;180461;180462;180463;180464;180465 180463 6 TPVLLHDHDER RAVGVPALGFSPMNRTPVLLHDHDERLHEA PMNRTPVLLHDHDERLHEAVFLRGVDIYTR R T P E R L 0 1 0 2 0 0 1 0 2 0 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1330.663 A0A1B0GU86;C9JMV9;A0A1B0GW23;Q03154 A0A1B0GU86 333 343 ABHD14A-ACY1;ACY1 Aminoacylase-1 yes no 3 0.0092721 30.004 By MS/MS 1 0.9776 0.84935 NaN 1 Median NaN NaN NaN 0 0 Median 0.9776 0.84935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 796210 420890 375310 0 0 0 796210 420890 375310 0 0 0 0 0 0 0 0 0 0 0 0 33995 322 35741 178488 180466 180466 1 TPVLMNFMMR GSIGLTALSAIAISRTPVLMNFMMRGSWVT IAISRTPVLMNFMMRGSWVTIGVTFAAMVG R T P M R G 0 1 1 0 0 0 0 0 0 0 1 0 3 1 1 0 1 0 0 1 0 0 10 0 1238.5974 Q9H3K2 Q9H3K2 148 157 GHITM Growth hormone-inducible transmembrane protein yes yes 2 0.0095388 45.081 By MS/MS By matching By matching 2 1 1 0.95165 0.91521 13.272 4 Median 0.86135 0.86167 13.688 2 0 Median 1.0415 0.88239 NaN 1 0 Median 0.95464 1.0737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8510500 4591400 3919100 6128100 3411500 2716600 1379700 681090 698650 1002700 498830 503860 0 0 0 0 0 0 0 0 0 33996 3954 35742 178489;178490;178491;178492 180467 180467 1 TPVPSDIDISR KPGKWMIQYNNLNLKTPVPSDIDISRSCKP LNLKTPVPSDIDISRSCKPKPIGKLAREIG K T P S R S 0 1 0 2 0 0 0 0 0 2 0 0 0 0 2 2 1 0 0 1 0 0 11 0 1198.6194 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 314 324 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00015971 114.4 By MS/MS By MS/MS By MS/MS 1 3 1 0.94979 0.80824 6.989 5 Median 0.74769 0.71738 NaN 1 0 Median 0.94979 0.82101 5.2877 3 2 Median NaN NaN NaN 0 0 Median 0.95178 0.80824 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157960000 83893000 74064000 104810000 57891000 46919000 48065000 23486000 24579000 0 0 0 5081700 2515600 2566000 0 0 0 0 0 0 33997 1968 35743 178493;178494;178495;178496;178497 180468;180469;180470;180471;180472;180473;180474 180469 7 TPVQAAAVSIVEKPVTR VAAKDKKPNKSKRSKTPVQAAAVSIVEKPV VQAAAVSIVEKPVTRKSERIDREKLKRSNS K T P T R K 3 1 0 0 0 1 1 0 0 1 0 1 0 0 2 1 2 0 0 4 0 0 17 1 1765.0098 Q96T58 Q96T58 1826 1842 SPEN Msx2-interacting protein yes yes 3 0.0013786 31.818 By MS/MS 1 0.70727 0.81944 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70727 0.81944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7593900 4600700 2993200 0 0 0 0 0 0 7593900 4600700 2993200 0 0 0 0 0 0 0 0 0 33998 3741 35744 178498 180475 180475 1 TPVSEDMLGR DAKKTSCEFTGDILRTPVSEDMLGRVFNGS GDILRTPVSEDMLGRVFNGSGKPIDRGPVV R T P G R V 0 1 0 1 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1103.5281 P21281;H0YC04;C9JL73;P15313;C9JNS9 P21281 121 130 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 2 0.00024769 127.68 By MS/MS By MS/MS 1 2 1.066 0.95148 3.7589 2 Median 0.97863 0.92653 NaN 1 0 Median 1.1612 0.97711 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30409000 15283000 15126000 19550000 10227000 9323200 10859000 5056000 5803200 0 0 0 0 0 0 0 0 0 0 0 0 33999 2086 35745 178499;178500;178501 180476;180477;180478;180479 180477 4 TPVSITEHPK VLGISSREGEEVMFKTPVSITEHPKINEWL EVMFKTPVSITEHPKINEWLTLVEKEMRVT K T P P K I 0 0 0 0 0 0 1 0 1 1 0 1 0 0 2 1 2 0 0 1 0 0 10 0 1107.5924 Q14204 Q14204 1688 1697 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00048844 73.985 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.87424 0.85427 8.2533 4 Median 0.88009 0.87383 NaN 1 0 Median 0.94992 0.83515 NaN 1 0 Median 0.8316 0.89712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86844 0.74431 NaN 1 0 Median 17777000 9396000 8380700 3904900 2177500 1727300 8291700 4111600 4180100 4242400 2409200 1833200 0 0 0 0 0 0 1337600 697630 639990 34000 2865 35746 178502;178503;178504;178505 180480;180481;180482;180483;180484 180483 5 TPVTDPATGAVK ISNGGLADIFTVFAKTPVTDPATGAVKEKI FAKTPVTDPATGAVKEKITAFVVERGFGGI K T P V K E 2 0 0 1 0 0 0 1 0 0 0 1 0 0 2 0 3 0 0 2 0 0 12 0 1155.6136 P49748 P49748 265 276 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 0.032347 45.908 By MS/MS By MS/MS 1 2 0.83816 0.7039 9.0486 3 Median 0.64509 0.61712 NaN 1 0 Median 0.85637 0.71878 2.9576 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22365000 11434000 10931000 5187900 3093300 2094600 17177000 8340300 8836400 0 0 0 0 0 0 0 0 0 0 0 0 34001 2394 35747 178506;178507;178508 180485;180486;180487 180485 3 TPVTQVNEVTGTLR LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI KTPVTQVNEVTGTLRIKGYFDQELKAWLLE K T P L R I 0 1 1 0 0 1 1 1 0 0 1 0 0 0 1 0 4 0 0 3 0 0 14 0 1513.81 Q13405;H0YDP7 Q13405 135 148 MRPL49 39S ribosomal protein L49, mitochondrial yes no 2 6.9551E-11 170.52 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 2 1.0386 0.87312 13.227 9 Median 0.81836 0.78724 0.95305 2 0 Median 1.0758 1.0672 11.34 4 3 Linear 0.86456 0.87312 NaN 1 0 Median 1.1905 0.96162 22.247 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103080000 52753000 50330000 46856000 25033000 21823000 12692000 5566100 7126000 38490000 19706000 18784000 5045300 2448500 2596800 0 0 0 0 0 0 34002 2810 35748 178509;178510;178511;178512;178513;178514;178515;178516;178517 180488;180489;180490;180491;180492;180493;180494;180495;180496;180497;180498;180499;180500;180501;180502;180503;180504 180495 17 TPVVQNAASIVQPSPAHVGQQGLSK KLRQSQLQKENVVQKTPVVQNAASIVQPSP VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL K T P S K L 3 0 1 0 0 4 0 2 1 1 1 1 0 0 3 3 1 0 0 4 0 0 25 0 2512.3398 A0A0U1RRM1;Q8WXI9 A0A0U1RRM1 200 224 GATAD2B Transcriptional repressor p66-beta yes no 3 4.226E-36 131.04 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 2 0.67098 0.60204 15.354 11 Median NaN NaN NaN 0 0 Median 0.70495 0.61078 NaN 1 0 Median 0.57561 0.56597 8.7362 2 0 Median 0.72449 0.6153 6.2984 3 0 Median 0.68429 0.65306 10.867 3 0 Median 0.55782 0.46966 24.189 2 0 Median 152440000 92209000 60229000 0 0 0 260280 155120 105160 98220000 59720000 38500000 7344500 4203200 3141300 45028000 27138000 17890000 1585600 993400 592240 34003 311 35749 178518;178519;178520;178521;178522;178523;178524;178525;178526;178527;178528 180505;180506;180507;180508;180509;180510;180511;180512;180513;180514;180515;180516;180517;180518 180507 14 TPVVTGTGPNFSLGELQGHLAYDLNPASTGLR TSGVFSVTELIQVSRTPVVTGTGPNFSLGE GHLAYDLNPASTGLRRTLPSTSSSGSKRHK R T P L R R 2 1 2 1 0 1 1 5 1 0 5 0 0 1 3 2 4 0 1 2 0 0 32 0 3281.6681 A0A286YEX4;P08651 A0A286YEX4 259 290 NFIC Nuclear factor 1 C-type yes no 3 1.0291E-11 50.757 By MS/MS 3 0.48067 0.47515 33.358 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48067 0.47515 33.358 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23506000 14992000 8513600 0 0 0 0 0 0 23506000 14992000 8513600 0 0 0 0 0 0 0 0 0 34004 350 35750 178529;178530;178531 180519;180520;180521 180521 3 TPYIVLSGSGK LGTVALLQEKQKAQKTPYIVLSGSGKSMNA KAQKTPYIVLSGSGKSMNANTITK______ K T P G K S 0 0 0 0 0 0 0 2 0 1 1 1 0 0 1 2 1 0 1 1 0 0 11 0 1120.6128 O43290 O43290 781 791 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.00019308 107.21 By MS/MS 1 0.80851 0.87946 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80851 0.87946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14629000 7862200 6766800 0 0 0 0 0 0 14629000 7862200 6766800 0 0 0 0 0 0 0 0 0 34005 1563 35751 178532 180522;180523 180523 2 TPYTDVNIVTIR LYANVRPCVSIEGYKTPYTDVNIVTIRENT GYKTPYTDVNIVTIRENTEGEYSGIEHVIV K T P I R E 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 0 3 0 1 2 0 0 12 0 1390.7456 P50213;H0YL72;H0YLI6;H0YMU3;H0YKD0 P50213 135 146 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes no 2 0.00015936 135.86 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0339 0.91758 63.63 6 Median 0.90154 0.87366 1.0214 2 0 Median 1.1871 1.0113 7.8373 2 0 Median 1.1727 1.1532 NaN 1 0 Median 0.23695 0.21099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 200370000 98200000 102170000 136000000 68503000 67494000 56512000 25794000 30718000 7381000 3503700 3877300 480590 399590 80998 0 0 0 0 0 0 34006 2409 35752 178533;178534;178535;178536;178537;178538 180524;180525;180526;180527;180528;180529;180530 180526 7 TPYTPNSQYQMLLDPTNPSAGTAK NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP QMLLDPTNPSAGTAKIDKQEKVKLNFDMTA R T P A K I 2 0 2 1 0 2 0 1 0 0 2 1 1 0 4 2 4 0 2 0 0 0 24 0 2594.2323 Q9ULU4 Q9ULU4 367 390 ZMYND8 Protein kinase C-binding protein 1 no no 3 2.2792E-12 59.429 By MS/MS 1 0.66576 0.71744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66576 0.71744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6350900 3825800 2525000 0 0 0 0 0 0 6350900 3825800 2525000 0 0 0 0 0 0 0 0 0 34007 4328 35753 178539 180531;180532 180532 2 TPYVTTTVSAHSAK GDGAEVYIDLLQKNRTPYVTTTVSAHSAKV RTPYVTTTVSAHSAKVKIAEFSRTPEDFLK R T P A K V 2 0 0 0 0 0 0 0 1 0 0 1 0 0 1 2 4 0 1 2 0 0 14 0 1461.7464 Q9BSJ2;F2Z2B9;R4GMM4 Q9BSJ2 37 50 TUBGCP2 Gamma-tubulin complex component 2 yes no 2;3 1.1179E-05 89.548 By matching By MS/MS 1 2 1.2377 0.88498 12.866 3 Plateau 0.87201 0.88498 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0946 0.95079 17.227 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3493400 1818800 1674600 807270 476490 330790 0 0 0 0 0 0 2686100 1342300 1343800 0 0 0 0 0 0 34008 3815 35754 178540;178541;178542 180533;180534;180535;180536 180534 4 TQADLDSLVR QALHATGARVVAVSRTQADLDSLVRECPGI VAVSRTQADLDSLVRECPGIEPVCVDLGDW R T Q V R E 1 1 0 2 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1116.5775 J3KS22;Q7Z4W1;J3QS36 J3KS22 38 47 DCXR L-xylulose reductase yes no 2 0.020497 56.013 By MS/MS By MS/MS 1 1 1.1194 1.0635 NaN 1 Median 1.1194 1.0635 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25176000 9910700 15266000 25176000 9910700 15266000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34009 1330 35755 178543;178544 180537;180538 180537 2 TQAVFNHTEDYVLLPDER VRYTGAGLSGRQVHRTQAVFNHTEDYVLLP VFNHTEDYVLLPDERTISLCCWDSRTAERR R T Q E R T 1 1 1 2 0 1 2 0 1 0 2 0 0 1 1 0 2 0 1 2 0 0 18 0 2146.0331 Q05048 Q05048 357 374 CSTF1 Cleavage stimulation factor subunit 1 yes yes 2;3 4.5476E-13 139.11 By matching By MS/MS By MS/MS 1 2 2 1.1018 0.96368 14.873 5 Median NaN NaN NaN 0 0 Median 1.192 1.0593 NaN 1 0 Median 0.78646 0.76908 4.8175 2 0 Median 1.1093 0.96654 0.41886 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111400000 57628000 53767000 0 0 0 345990 143260 202730 106310000 55267000 51043000 4739800 2218200 2521700 0 0 0 0 0 0 34010 2716 35756 178545;178546;178547;178548;178549 180539;180540;180541;180542;180543;180544;180545 180540 7 TQAYQDQKPGTSGLR ______________________________ TQAYQDQKPGTSGLRKRVKVFQSSANYAEN K T Q L R K 1 1 0 1 0 3 0 2 0 0 1 1 0 0 1 1 2 0 1 0 0 0 15 1 1648.8169 P36871;A0A3B3ITK7 P36871 9 23 PGM1 Phosphoglucomutase-1 yes no 3 4.1912E-05 78.69 By MS/MS By MS/MS By matching 1 3 1 1.0278 1.0357 17.136 5 Median 0.80117 0.80364 NaN 1 0 Median 1.1793 1.0737 17.046 3 0 Plateau 1.0278 1.1342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28511000 13297000 15214000 11242000 5972900 5268600 16812000 7090200 9721500 457610 234070 223540 0 0 0 0 0 0 0 0 0 34011 2262 35757 178550;178551;178552;178553;178554 180546;180547;180548 180547 3 TQCPTCCVTVTEPDLK HNYCSLCIRKFLSYKTQCPTCCVTVTEPDL QCPTCCVTVTEPDLKNNRILDELVKSLNFA K T Q L K N 0 0 0 1 3 1 1 0 0 0 1 1 0 0 2 0 4 0 0 2 0 0 16 0 1907.8427 Q9NS91;F8WE49;C9J0Q4;F8WFA6 Q9NS91 58 73 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 3 0.056253 10.196 By matching By MS/MS 1 1 0.88885 0.84818 18.806 2 Median 0.78486 0.74256 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0066 0.96881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4583500 2458000 2125500 2600900 1477500 1123400 0 0 0 1982600 980550 1002100 0 0 0 0 0 0 0 0 0 34012 4099 35758 178555;178556 180549 180549 1 TQDASGPELILPASIEFR IRVEQQPDYRRQESRTQDASGPELILPASI ASGPELILPASIEFRESSEDSFLSAIINYT R T Q F R E 2 1 0 1 0 1 2 1 0 2 2 0 0 1 2 2 1 0 0 0 0 0 18 0 1943 J3KN01;P55196;Q5TIG5;A8MQ02;H0Y7R8 J3KN01 591 608 MLLT4 Afadin yes no 2 4.9771E-06 62.891 By MS/MS By MS/MS By matching 1 2 1 0.73216 0.73639 26.131 4 Median 0.85444 0.84463 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53343 0.57133 28.12 2 0 Median 0.89758 0.77799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5656100 3240700 2415400 2812700 1513900 1298800 0 0 0 2722100 1660700 1061500 121280 66231 55044 0 0 0 0 0 0 34013 1300 35759 178557;178558;178559;178560 180550;180551;180552;180553 180550 4 TQDGETALQLAIR SALFLLEHQADINVRTQDGETALQLAIRNQ VRTQDGETALQLAIRNQLPLVVDAICTRGA R T Q I R N 2 1 0 1 0 2 1 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 13 0 1414.7416 Q9P2R3 Q9P2R3 652 664 ANKFY1 Rabankyrin-5 yes yes 2 6.7811E-07 104.52 By MS/MS By matching 1 1 1.0925 0.99646 19.362 2 Median 0.89921 0.86896 NaN 1 0 Median 1.3273 1.1427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7959500 3928200 4031300 6293600 3252100 3041500 1665900 676090 989790 0 0 0 0 0 0 0 0 0 0 0 0 34014 4229 35760 178561;178562 180554;180555 180555 2 TQEEIVAK KILKKGQAVDYEGSRTQEEIVAKVREVSQP VDYEGSRTQEEIVAKVREVSQPDWTPPPEV R T Q A K V 1 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 8 0 916.48656 P13667;A0A499FI48 P13667 156 163 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.066471 31.229 By matching By MS/MS By matching 1 2 1 1.1288 1.0269 13.975 4 Median 1.0069 1.0145 NaN 1 0 Median 1.2648 1.1032 23.056 2 0 Median NaN NaN NaN 0 0 Median 1.1713 1.0394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6571500 2953000 3618600 1270000 610960 659070 5069400 2228100 2841200 0 0 0 232140 113890 118250 0 0 0 0 0 0 34015 1993 35761 178563;178564;178565;178566 180556 180556 1 TQEELKELLNK HVKDEQIEHWKKIVKTQEELKELLNKMVNL KIVKTQEELKELLNKMVNLKEKIKELHQQY K T Q N K M 0 0 1 0 0 1 3 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 11 1 1343.7296 O60341;R4GMQ1 O60341 437 447 KDM1A Lysine-specific histone demethylase 1A yes no 2;3 0.00057081 136.52 By MS/MS By matching 2 1 0.85338 0.97371 2.9158 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83851 0.95723 2.4132 2 0 Median NaN NaN NaN 0 0 Median 0.89055 0.99725 NaN 1 0 Median NaN NaN NaN 0 0 Median 26241000 14223000 12018000 0 0 0 0 0 0 23405000 12656000 10749000 0 0 0 2836000 1566500 1269500 0 0 0 34016 1613 35762 178567;178568;178569 180557;180558;180559 180558 3 TQEFPQILTLIGR LQWLLDESFKGDKIKTQEFPQILTLIGRNP IKTQEFPQILTLIGRNPVGYPLAWQFLRKN K T Q G R N 0 1 0 0 0 2 1 1 0 2 2 0 0 1 1 0 2 0 0 0 0 0 13 0 1514.8457 Q9NZ08;H0Y9X5 Q9NZ08 829 841 ERAP1 Endoplasmic reticulum aminopeptidase 1 yes no 2 0.00062741 69.01 By MS/MS By MS/MS 2 2 0.96102 0.90921 11.442 4 Median 0.85618 0.85287 5.3693 2 1 Median 1.1411 1.0025 10.133 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5538600 2871700 2667000 3982800 2132100 1850600 1555900 739570 816330 0 0 0 0 0 0 0 0 0 0 0 0 34017 4182 35763 178570;178571;178572;178573 180560;180561;180562;180563 180561 4 TQEQLALEMAELTAR EAKEALLQASRDQKKTQEQLALEMAELTAR TQEQLALEMAELTARISQLEMARQKKESEA K T Q A R I 3 1 0 0 0 2 3 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 15 0 1702.856 P26038 P26038 413 427 MSN Moesin yes yes 2;3 2.1519E-09 102.66 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 4 2 1 1.1138 1.0238 25.856 17 Median 1.0824 1.0238 18.349 5 0 Median 1.1546 0.99912 22.122 5 0 Median 1.0286 1.0444 41.161 4 1 Median 1.0379 0.8747 25.621 2 0 Median 1.2753 1.3449 NaN 1 0 Median NaN NaN NaN 0 0 Median 94742000 43550000 51192000 32914000 15483000 17432000 16714000 7163800 9550600 42418000 19538000 22880000 2245600 1107300 1138200 449460 258420 191040 0 0 0 34018 2139 35764;35765 178574;178575;178576;178577;178578;178579;178580;178581;178582;178583;178584;178585;178586;178587;178588;178589;178590 180564;180565;180566;180567;180568;180569;180570;180571;180572;180573;180574;180575;180576;180577;180578;180579 180564 901 16 TQETPSAQMEGFLNR KTALPAQSAATLPARTQETPSAQMEGFLNR TQETPSAQMEGFLNRKHEWEAHNKKASSRS R T Q N R K 1 1 1 0 0 2 2 1 0 0 1 0 1 1 1 1 2 0 0 0 0 0 15 0 1707.7886 Q01082;A0A087WUZ3 Q01082 2192 2206 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 1.1689E-09 155.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 4 2 2 0.86595 0.78692 11.004 13 Median NaN NaN NaN 0 0 Median 1.0254 0.8785 28.558 2 0 Median 0.77778 0.84773 7.8576 3 0 Median 0.89024 0.77649 2.8617 4 0 Median 0.79105 0.81886 5.6275 2 0 Median 0.9868 0.81768 8.8082 2 0 Median 101750000 54561000 47186000 0 0 0 4517500 2219000 2298500 77593000 42435000 35158000 7192400 3692000 3500300 11650000 5829400 5820200 794250 385920 408330 34019 2681 35766;35767 178591;178592;178593;178594;178595;178596;178597;178598;178599;178600;178601;178602;178603 180580;180581;180582;180583;180584;180585;180586;180587;180588;180589;180590;180591;180592;180593;180594;180595;180596 180580 1380 17 TQEVLQAVAEK EVEGGVPDIEEQERRTQEVLQAVAEKVKEE QERRTQEVLQAVAEKVKEESQLPGTGGPED R T Q E K V 2 0 0 0 0 2 2 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1214.6507 Q02952 Q02952 1039 1049 AKAP12 A-kinase anchor protein 12 yes yes 2 0.00013616 88.134 By MS/MS By MS/MS 1 1 1.4969 1.4983 NaN 1 Median 1.4969 1.4983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9551800 2889300 6662500 9551800 2889300 6662500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34020 2705 35768 178604;178605 180597;180598 180597 1 TQFLTTPISQAQK GAQQKVAYAAQPALKTQFLTTPISQAQKLA LKTQFLTTPISQAQKLAGAQQVQTQIQVAK K T Q Q K L 1 0 0 0 0 3 0 0 0 1 1 1 0 1 1 1 3 0 0 0 0 0 13 0 1461.7827 Q96L91;A0A0A0MR70 Q96L91 3019 3031 EP400 E1A-binding protein p400 yes no 2 9.7133E-07 99.568 By MS/MS By matching 1 1 0.8049 0.80395 0.82695 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75763 0.80866 NaN 1 0 Median 0.85513 0.79926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20166000 11625000 8541200 0 0 0 0 0 0 19403000 11283000 8119300 763230 341300 421930 0 0 0 0 0 0 34021 3700 35769 178606;178607 180599;180600 180599 2 TQGFLALFSGDTGEIK VHTVSLHEIDVINSRTQGFLALFSGDTGEI QGFLALFSGDTGEIKSEVREQINAKVAEWR R T Q I K S 1 0 0 1 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 0 0 0 16 0 1682.8516 Q9Y230;M0R0Y3 Q9Y230 254 269 RUVBL2 RuvB-like 2 yes no 2 0.00013333 53.967 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 3 2 1 1.1822 1.0848 7.9017 8 Median 1.1345 1.0662 NaN 1 0 Median 1.2504 1.0637 NaN 1 0 Median 1.0848 1.0894 13.376 3 0 Median 1.2384 1.0849 0.62362 2 0 Median 1.1542 1.1027 NaN 1 0 Median NaN NaN NaN 0 0 Median 50990000 24179000 26811000 6217200 2887600 3329600 5443500 2364900 3078700 34581000 16783000 17798000 1959600 863370 1096200 2788600 1280300 1508200 0 0 0 34022 4368 35770 178608;178609;178610;178611;178612;178613;178614;178615 180601;180602;180603;180604;180605;180606;180607 180606 7 TQGIWLSPLYPR VIHTSNLIHADWHQKTQGIWLSPLYPRIAD HQKTQGIWLSPLYPRIADGTHKSGESPTHF K T Q P R I 0 1 0 0 0 1 0 1 0 1 2 0 0 0 2 1 1 1 1 0 0 0 12 0 1429.7718 G3V2F4;E7EPD8;Q9NUW8;G3V2J6 G3V2F4 293 304 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 2 0.001592 51.092 By MS/MS By matching 1 1 0.95781 0.91337 9.0141 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81333 0.85697 NaN 1 0 Median 1.128 0.97348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4203300 2102800 2100500 0 0 0 0 0 0 4005300 2019000 1986300 197970 83762 114200 0 0 0 0 0 0 34023 869 35771 178616;178617 180608;180609 180609 2 TQGVPAVLK PTVPGSSISVPTAARTQGVPAVLKVTGPQA VPTAARTQGVPAVLKVTGPQATTGTPLVTM R T Q L K V 1 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 2 0 0 9 0 911.54402 A6NEM2;P51610 A6NEM2 480 488 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.0063689 54.776 By MS/MS By matching 2 2 1.1139 0.98243 58.132 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3967 1.5291 90.194 2 0 Median 1.1139 0.98243 6.7769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13831000 6250800 7580500 0 0 0 0 0 0 10253000 4587800 5665200 3578300 1662900 1915400 0 0 0 0 0 0 34024 509;2438 35772 178618;178619;178620;178621 180610;180611 180611 2 TQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVK QPVQLAFQQQIQTLKTQHEEFVTSLAQQQQ QQQQLQMPQMEAEVKATPPPPAPPPAPAPA K T Q V K A 2 0 0 0 0 15 4 0 1 0 2 1 2 1 1 1 2 0 0 2 0 0 34 0 4081.9222 J3QK89;Q8IWX8 J3QK89 330 363 CHERP Calcium homeostasis endoplasmic reticulum protein yes no 4 9.5976E-16 59.838 By MS/MS By matching By MS/MS 1 1 1 0.89392 0.98602 13.122 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80765 0.88491 NaN 1 0 Median 0.89392 0.76098 NaN 1 0 Median 0.96729 0.98833 NaN 1 0 Median NaN NaN NaN 0 0 Median 14764000 6732800 8031500 0 0 0 0 0 0 3014500 1152200 1862200 403250 186450 216800 11347000 5394100 5952500 0 0 0 34025 1338 35773 178622;178623;178624 180612;180613;180614 180614 3 TQHLSNDHICYFLYQILR IVQDLMETDLYKLLKTQHLSNDHICYFLYQ LSNDHICYFLYQILRGLKYIHSANVLHRDL K T Q L R G 0 1 1 1 1 2 0 0 2 2 3 0 0 1 0 1 1 0 2 0 0 0 18 0 2320.1423 P28482 P28482 118 135 MAPK1 Mitogen-activated protein kinase 1 yes yes 3 1.6632E-06 65.107 By MS/MS 2 1.0843 0.92905 1.7619 2 Median NaN NaN NaN 0 0 Median 1.0843 0.92905 1.7619 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4062200 1855600 2206600 0 0 0 4062200 1855600 2206600 0 0 0 0 0 0 0 0 0 0 0 0 34026 2166 35774 178625;178626 180615;180616 180615 2 TQHLSVETSYLQHESGR SYAWLLSWLTRHSTRTQHLSVETSYLQHES HLSVETSYLQHESGRISTKFEFVPSPGNHF R T Q G R I 0 1 0 0 0 2 2 1 2 0 2 0 0 0 0 3 2 0 1 1 0 0 17 0 1970.9446 C9JAS4;A0A2R8Y7T3;C9J8G3;Q9Y276 C9JAS4 74 90 BCS1L Mitochondrial chaperone BCS1 yes no 4 5.1843E-05 47.754 By MS/MS 1 1.2546 1.2431 NaN 1 Median 1.2546 1.2431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5610200 2329500 3280700 5610200 2329500 3280700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34027 383 35775 178627 180617 180617 1 TQHNGMNNIIR SCPSTSSFYSSATAKTQHNGMNNIIRLFLK ATAKTQHNGMNNIIRLFLKKGLVNDLARVP K T Q I R L 0 1 3 0 0 1 0 1 1 2 0 0 1 0 0 0 1 0 0 0 0 0 11 0 1296.6357 Q7Z6Z7 Q7Z6Z7 2204 2214 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.00022212 62.466 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.069 1.0371 16.054 5 Median 0.86208 0.88605 27.65 2 1 Median 1.2307 1.0414 NaN 1 0 Median 0.85009 0.92319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2252 1.0371 NaN 1 0 Median 10474000 5052900 5421400 4953400 2570600 2382800 4232400 1884000 2348400 1034100 544540 489560 0 0 0 0 0 0 254350 53734 200620 34028 3253 35776 178628;178629;178630;178631;178632 180618;180619;180620 180619 3 TQIALSPNNHEVHIYK FLLEPITCHAWNRDRTQIALSPNNHEVHIY QIALSPNNHEVHIYKKNGSQWVKAHELKEH R T Q Y K K 1 0 2 0 0 1 1 0 2 2 1 1 0 0 1 1 1 0 1 1 0 0 16 0 1862.9639 A0A1W2PNV4;E9PF58;Q92747 Q92747 21 36 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 3;4 0.00014116 45.723 By MS/MS By MS/MS By MS/MS By matching 5 2 2 1 0.92566 0.92501 7.2703 10 Median 0.92472 0.87047 7.3267 5 0 Median 1.1278 0.97511 4.5484 2 0 Median 0.90139 0.93068 3.3136 2 0 Median 1.1221 0.94451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101020000 50911000 50106000 43196000 22234000 20962000 8083500 3628200 4455200 48856000 24684000 24172000 881300 364520 516780 0 0 0 0 0 0 34029 334;3552 35777 178633;178634;178635;178636;178637;178638;178639;178640;178641;178642 180621;180622;180623;180624;180625;180626;180627;180628;180629;180630 180627 10 TQIALSPNNHEVHIYKK FLLEPITCHAWNRDRTQIALSPNNHEVHIY IALSPNNHEVHIYKKNGSQWVKAHELKEHN R T Q K K N 1 0 2 0 0 1 1 0 2 2 1 2 0 0 1 1 1 0 1 1 0 0 17 1 1991.0589 A0A1W2PNV4;E9PF58;Q92747 Q92747 21 37 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 3;4 5.1526E-06 65.716 By MS/MS By MS/MS 4 1 1.0032 1.0012 9.9235 5 Median 1.0072 1.0461 11.152 4 0 Median NaN NaN NaN 0 0 Median 0.8818 0.96092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37833000 20035000 17799000 31914000 16981000 14933000 0 0 0 5919600 3053700 2865800 0 0 0 0 0 0 0 0 0 34030 334;3552 35778 178643;178644;178645;178646;178647 180631;180632;180633;180634;180635;180636;180637;180638 180634 8 TQIDHYVGIAR ELLIFSVPIVYEKYKTQIDHYVGIARDQTK EKYKTQIDHYVGIARDQTKSIVEKIQAKLP K T Q A R D 1 1 0 1 0 1 0 1 1 2 0 0 0 0 0 0 1 0 1 1 0 0 11 0 1271.6622 O95197 O95197 999 1009 RTN3 Reticulon-3 yes yes 2;3 6.8225E-07 167.1 By MS/MS By MS/MS By MS/MS By matching 9 11 2 1 1.2141 1.0821 22.188 23 Median 1.1889 1.1458 23.141 9 0 Median 1.2141 1.0346 22.019 11 1 Median NaN NaN NaN 0 0 Median 1.546 1.2791 7.1511 2 1 Median 0.65186 0.78132 NaN 1 0 Median NaN NaN NaN 0 0 Median 719290000 326930000 392360000 307740000 138440000 169300000 407530000 186650000 220870000 0 0 0 3547800 1527400 2020300 471980 305130 166850 0 0 0 34031 1753 35779 178648;178649;178650;178651;178652;178653;178654;178655;178656;178657;178658;178659;178660;178661;178662;178663;178664;178665;178666;178667;178668;178669;178670 180639;180640;180641;180642;180643;180644;180645;180646;180647;180648;180649;180650;180651;180652;180653;180654;180655;180656;180657;180658;180659;180660;180661;180662;180663;180664;180665;180666;180667;180668;180669;180670;180671;180672 180669 34 TQIEQTNEER NKEIKNALKEVKQIKTQIEQTNEERKLLLS VKQIKTQIEQTNEERKLLLSSLEEAKKKKE K T Q E R K 0 1 1 0 0 2 3 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1246.579 CON__P17697 CON__P17697 52 61 yes yes 2 0.04235 45.161 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 415370 415370 0 0 0 0 0 0 0 0 0 0 0 0 0 415370 415370 0 0 0 0 + 34032 759 35780 178671 180673 180673 1 TQIGMTESLLK SGSTAELREDLDQAKTQIGMTESLLKALSP DQAKTQIGMTESLLKALSPSDSLEIFTKLE K T Q L K A 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 1 2 0 0 0 0 0 11 0 1219.6482 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1759 1769 SYNE2 Nesprin-2 yes no 2 0.002334 54.066 By matching By MS/MS 1 1 0.99255 0.96013 8.4693 2 Median NaN NaN NaN 0 0 Median 1.1642 1.0194 NaN 1 0 Median 0.84622 0.90432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15139000 7832600 7306200 0 0 0 1965400 841880 1123500 13173000 6990700 6182700 0 0 0 0 0 0 0 0 0 34033 3521 35781 178672;178673 180674 180674 1 TQIHFDPEVVQIK EEEKHKESDLRDVKKTQIHFDPEVVQIKAG KKTQIHFDPEVVQIKAGKAEIDRRISAFIE K T Q I K A 0 0 0 1 0 2 1 0 1 2 0 1 0 1 1 0 1 0 0 2 0 0 13 0 1552.8249 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9;S4R3Y0 Q9NS73 141 153 MBIP MAP3K12-binding inhibitory protein 1 yes no 3 0.029261 20.236 By MS/MS 1 0.83106 0.89318 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83106 0.89318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3569800 1850400 1719400 0 0 0 0 0 0 3569800 1850400 1719400 0 0 0 0 0 0 0 0 0 34034 4097 35782 178674 180675 180675 1 TQILAASYELHK LNEAWADLLELIDTRTQILAASYELHKFYH DTRTQILAASYELHKFYHDAKEIFGRIQDK R T Q H K F 2 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 1 0 0 0 12 0 1372.7351 Q01082;A0A087WUZ3 Q01082 1798 1809 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 3.8725E-06 152.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 5 3 5 1.2055 1.1256 26.902 24 Median 1.3311 1.282 9.1428 3 0 Median 1.31 1.1623 28.74 5 2 Median 0.8783 0.96372 4.7188 3 0 Plateau 1.1284 1.0137 43.965 5 1 Median 1.3273 1.3897 8.1703 3 2 Plateau 1.1726 1.0045 25.055 5 2 Median 343520000 157610000 185910000 39384000 14593000 24791000 83769000 35449000 48321000 130370000 66592000 63775000 24444000 11043000 13401000 48059000 22214000 25845000 17498000 7717300 9780900 34035 2681 35783 178675;178676;178677;178678;178679;178680;178681;178682;178683;178684;178685;178686;178687;178688;178689;178690;178691;178692;178693;178694;178695;178696;178697;178698 180676;180677;180678;180679;180680;180681;180682;180683;180684;180685;180686;180687;180688;180689;180690;180691;180692;180693;180694;180695;180696;180697;180698;180699;180700;180701 180686 26 TQIPTQR RPLPVSRLVSLIGSKTQIPTQRYGRRPYGV LVSLIGSKTQIPTQRYGRRPYGVGLLIAGY K T Q Q R Y 0 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 7 0 842.46102 P25786;F5GX11 P25786 116 122 PSMA1 Proteasome subunit alpha type-1 yes no 2 0.017772 64.757 By MS/MS By matching By matching 1 2 1 0.9863 0.93558 4.6192 4 Median 0.96882 0.93382 NaN 1 0 Median 1.0254 0.89825 6.8825 2 0 Median 1.0041 0.93733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3729600 1913400 1816100 2546800 1358500 1188400 791070 372990 418080 391660 182000 209660 0 0 0 0 0 0 0 0 0 34036 2136 35784 178699;178700;178701;178702 180702;180703 180703 2 TQIQSQESDLKSQEDDLNR RQKCQDETQMISSLKTQIQSQESDLKSQED SQESDLKSQEDDLNRAKSELNRLQQEETQL K T Q N R A 0 1 1 3 0 4 2 0 0 1 2 1 0 0 0 3 1 0 0 0 0 0 19 1 2233.0458 M0R165;Q9UBC2;M0R2S2 M0R165 482 500 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 yes no 3 2.9781E-08 76.768 By MS/MS By MS/MS 2 1 1.148 1.3027 33.703 3 Median 1.3776 1.4221 47.122 2 1 Median NaN NaN NaN 0 0 Median 1.148 1.3027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13480000 6206700 7272900 7177900 2859400 4318500 0 0 0 6301700 3347300 2954400 0 0 0 0 0 0 0 0 0 34037 1431 35785 178703;178704;178705 180704;180705;180706 180704 3 TQIVTEIISEIR LVERLLHIIIDDNKRTQIVTEIISEIRAPI NKRTQIVTEIISEIRAPIVTVGVNNDPADV R T Q I R A 0 1 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 12 0 1400.7875 Q9BPX3;H0Y9Z8 Q9BPX3 459 470 NCAPG Condensin complex subunit 3 yes no 2 0.0052277 41.54 By matching By MS/MS By matching 1 1 2 1.0718 1.3131 20.419 4 Linear NaN NaN NaN 0 0 Median 1.4928 1.4178 NaN 1 0 Median 1.0582 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0675 0.924 0.30939 2 0 Median 1827300 909660 917590 0 0 0 824520 453340 371180 653300 344880 308420 0 0 0 0 0 0 349430 111440 238000 34038 3778 35786 178706;178707;178708;178709 180707;180708 180707 2 TQLAVCQQR FQKVLQLYPNNKAAKTQLAVCQQRIRRQLA NNKAAKTQLAVCQQRIRRQLAREKKLYANM K T Q Q R I 1 1 0 0 1 3 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1102.5553 Q02790;H0YFG2 Q02790 391 399 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 0.0012806 83.265 By MS/MS By MS/MS 1 1 1.1472 1.0452 20.056 2 Median 1.2275 1.2044 NaN 1 0 Median 1.0722 0.90697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6799900 3272500 3527400 888590 414130 474460 5911300 2858400 3052900 0 0 0 0 0 0 0 0 0 0 0 0 34039 2701 35787 178710;178711 180709;180710;180711 180711 3 TQLEELEDELQATEDAK EKSKRALEQQVEEMKTQLEELEDELQATED LEELEDELQATEDAKLRLEVNLQAMKAQFE K T Q A K L 2 0 0 2 0 2 5 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 17 0 1960.9113 P35579;P35580 P35579 1539 1555 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.0050195 30.438 By matching By MS/MS By MS/MS By matching 1 6 1 1 0.96993 0.84582 17.782 9 Median 1.0947 1.054 NaN 1 0 Median 0.92828 0.8151 14.389 6 0 Median 0.59466 0.66081 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97365 1.0159 NaN 1 0 Median NaN NaN NaN 0 0 Median 92115000 43077000 49038000 19687000 8884000 10803000 64637000 29600000 35038000 6856300 4098900 2757400 0 0 0 933730 493970 439760 0 0 0 34040 2244;2245 35788 178712;178713;178714;178715;178716;178717;178718;178719;178720 180712;180713;180714;180715 180713 4 TQLIQLSTLLR DQMHQNFEEQMQGMKTQLIQLSTLLRLLDS QGMKTQLIQLSTLLRLLDSGFCSYLESQDS K T Q L R L 0 1 0 0 0 2 0 0 0 1 4 0 0 0 0 1 2 0 0 0 0 0 11 0 1284.7765 Q8TC07 Q8TC07 497 507 TBC1D15 TBC1 domain family member 15 yes yes 2 0.017604 35.944 By MS/MS 2 0.93444 0.92364 4.1194 2 Median 0.93444 0.92364 4.1194 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4937500 2483700 2453800 4937500 2483700 2453800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34041 3463 35789 178721;178722 180716 180716 1 TQLLQDVQDENK LEAMLKERESDLSSKTQLLQDVQDENKLFK SSKTQLLQDVQDENKLFKSQIEQLKQQNYQ K T Q N K L 0 0 1 2 0 3 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1429.7049 Q86UP2;G3V4Y7;H0YJV5 Q86UP2 960 971 KTN1 Kinectin yes no 2 1.7026E-10 135.86 By MS/MS By MS/MS By MS/MS 2 2 2 1.2286 1.0739 25.53 6 Median 1.0773 1.046 55.259 2 1 Median 1.1959 1.0372 8.1567 2 0 Median NaN NaN NaN 0 0 Median 1.2592 1.1159 8.6591 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38830000 17367000 21463000 13703000 6592100 7110600 12448000 5557900 6889800 0 0 0 12680000 5217100 7462800 0 0 0 0 0 0 34042 3280 35790 178723;178724;178725;178726;178727;178728 180717;180718;180719;180720;180721;180722;180723;180724;180725;180726 180726 10 TQLLQDVQDENKLFK LEAMLKERESDLSSKTQLLQDVQDENKLFK TQLLQDVQDENKLFKSQIEQLKQQNYQQAS K T Q F K S 0 0 1 2 0 3 1 0 0 0 3 2 0 1 0 0 1 0 0 1 0 0 15 1 1817.9523 Q86UP2;G3V4Y7;H0YJV5 Q86UP2 960 974 KTN1 Kinectin yes no 3 0.0079089 25.866 By matching By MS/MS 1 1 1.2509 1.3185 3.4413 2 Median 1.3355 1.2868 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1716 1.3509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20120000 8723300 11397000 12060000 4829600 7229900 0 0 0 8060900 3893700 4167200 0 0 0 0 0 0 0 0 0 34043 3280 35791 178729;178730 180727 180727 1 TQLLQPADENWDPTGTK KTLVEANNEHMVEVRTQLLQPADENWDPTG LLQPADENWDPTGTKKIWHCESNRSHTTIA R T Q T K K 1 0 1 2 0 2 1 1 0 0 2 1 0 0 2 0 3 1 0 0 0 0 17 0 1912.9167 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248;F5GWV3;H0Y5J3;H0Y6I7 O15550 1002 1018 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 2 2.1382E-05 62.14 By MS/MS 1 0.64879 0.70312 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64879 0.70312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3829600 2172800 1656800 0 0 0 0 0 0 3829600 2172800 1656800 0 0 0 0 0 0 0 0 0 34044 111 35792 178731 180728;180729 180729 2 TQLNDSLKEIHQK PDGSQNLVYETELLRTQLNDSLKEIHQKEL LRTQLNDSLKEIHQKELRIQQLNSNFSQLL R T Q Q K E 0 0 1 1 0 2 1 0 1 1 2 2 0 0 0 1 1 0 0 0 0 0 13 1 1552.8209 Q14789;H7C5I7 Q14789 3032 3044 GOLGB1 Golgin subfamily B member 1 yes no 3 0.052821 25.322 By MS/MS 1 1.3656 1.4822 NaN 1 Median 1.3656 1.4822 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4010900 1888800 2122100 4010900 1888800 2122100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34045 2900 35793 178732 180730 180730 1 TQLQENETHSQLTNLER KKIMEKQNIEYEALKTQLQENETHSQLTNL LQENETHSQLTNLERKWQHLEQNNFAMKEF K T Q E R K 0 1 2 0 0 3 3 0 1 0 3 0 0 0 0 1 3 0 0 0 0 0 17 0 2039.9872 Q96LB3 Q96LB3 531 547 IFT74 Intraflagellar transport protein 74 homolog yes yes 3 3.4297E-05 49.049 By MS/MS By matching By MS/MS 1 2 1 1.1139 1.126 5.7534 4 Median 1.1485 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0779 1.1766 4.97 2 0 Median 1.2695 1.0603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20629000 10163000 10466000 5116400 2645300 2471100 0 0 0 13414000 6521300 6892400 2099200 996540 1102600 0 0 0 0 0 0 34046 3701 35794 178733;178734;178735;178736 180731;180732 180732 2 TQLQLDER GGIEICITFPTEYVKTQLQLDERSHPPRYR FPTEYVKTQLQLDERSHPPRYRGIGDCVRQ K T Q E R S 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 1001.5142 P53007 P53007 51 58 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.0042854 82.452 By MS/MS By MS/MS By matching 1 3 1 1.0211 0.84922 16.852 5 Median 0.81111 0.75817 NaN 1 1 Median 1.1709 0.97855 15.225 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81535 0.80215 NaN 1 0 Median NaN NaN NaN 0 0 Median 23453000 11694000 11759000 9689400 5346000 4343400 11485000 5074700 6409800 0 0 0 0 0 0 2278800 1273500 1005300 0 0 0 34047 2464 35795 178737;178738;178739;178740;178741 180733;180734;180735 180734 3 TQLQQLGVTLSMTR PATTLYAHFEQANIKTQLQQLGVTLSMTRT KTQLQQLGVTLSMTRTELSPAQIKQLLQNP K T Q T R T 0 1 0 0 0 3 0 1 0 0 3 0 1 0 0 1 3 0 0 1 0 0 14 0 1574.845 Q7Z3B4 Q7Z3B4 272 285 NUP54 Nucleoporin p54 yes yes 2 0.013278 46.73 By MS/MS 1 1.3939 1.4417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3939 1.4417 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4521400 1807000 2714400 0 0 0 0 0 0 4521400 1807000 2714400 0 0 0 0 0 0 0 0 0 34048 3239 35796 178742 180736 180736 1693 1 TQLTSMLMMNLESRPVIFEDVGR LMGGTVDTVELERAKTQLTSMLMMNLESRP MNLESRPVIFEDVGRQVLATRSRKLPHELC K T Q G R Q 0 2 1 1 0 1 2 1 0 1 3 0 3 1 1 2 2 0 0 2 0 0 23 1 2666.323 Q10713;Q5SXN9 Q10713 429 451 PMPCA Mitochondrial-processing peptidase subunit alpha yes no 3 2.2786E-08 61.222 By MS/MS 1 1.3555 1.2224 NaN 1 Median NaN NaN NaN 0 0 Median 1.3555 1.2224 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8112600 3852300 4260300 0 0 0 8112600 3852300 4260300 0 0 0 0 0 0 0 0 0 0 0 0 34049 2754 35797 178743 180737 180737 1 TQLVSNLK LQEVKVMADRIIGMRTQLVSNLKKEGSTHN DRIIGMRTQLVSNLKKEGSTHNWQHITDQI R T Q L K K 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 8 0 901.52328 P00505 P00505 356 363 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0030924 101.6 By MS/MS By MS/MS By MS/MS 1 1 1 1.4722 1.2272 8.4497 3 Plateau 1.1393 1.0731 NaN 1 0 Median 1.4722 1.2543 NaN 1 0 Median 1.1137 1.2272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22774000 9324500 13450000 2615400 1240900 1374500 17762000 7027400 10735000 2396700 1056200 1340500 0 0 0 0 0 0 0 0 0 34050 1823 35798 178744;178745;178746 180738;180739;180740;180741;180742 180741 5 TQLVSNLKK LQEVKVMADRIIGMRTQLVSNLKKEGSTHN RIIGMRTQLVSNLKKEGSTHNWQHITDQIG R T Q K K E 0 0 1 0 0 1 0 0 0 0 2 2 0 0 0 1 1 0 0 1 0 0 9 1 1029.6182 P00505 P00505 356 364 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 0.0164 47.198 By MS/MS By MS/MS By matching 2 3 1 1.1128 1.0335 12.107 6 Median 1.0838 1.015 2.8875 2 0 Median 1.5056 1.0311 16.666 3 0 Plateau 1.0658 1.1615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11272000 4537500 6734800 2248600 1061500 1187100 7620500 2800000 4820500 1403200 676000 727150 0 0 0 0 0 0 0 0 0 34051 1823 35799 178747;178748;178749;178750;178751;178752 180743;180744;180745;180746 180743 4 TQLVWLVR QILMEKYLKLQDTCRTQLVWLVRELVKSGV KLQDTCRTQLVWLVRELVKSGVLGADGVCM R T Q V R E 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 0 2 0 0 8 0 1013.6022 Q68E01 Q68E01 143 150 INTS3 Integrator complex subunit 3 yes yes 2 0.044676 35.88 By MS/MS By matching 2 1 1.041 1.1174 18.468 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95984 1.0289 11.67 2 0 Median 1.5409 1.3698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2196800 1138600 1058200 0 0 0 0 0 0 2053900 1083600 970370 142850 55017 87830 0 0 0 0 0 0 34052 3126 35800 178753;178754;178755 180747 180747 1 TQLWASEPGTPPLPTSLPSQNPILK DIKLAAKLIHTLDDRTQLWASEPGTPPLPT PPLPTSLPSQNPILKNITDYLIEEVSAEEE R T Q L K N 1 0 1 0 0 2 1 1 0 1 4 1 0 0 6 3 3 1 0 0 0 0 25 0 2671.4221 Q9BXP5;H7C3A1 Q9BXP5 535 559 SRRT Serrate RNA effector molecule homolog yes no 3 0.038427 18.403 By MS/MS 1 0.42715 0.46002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42715 0.46002 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1938500 1024500 914010 0 0 0 0 0 0 1938500 1024500 914010 0 0 0 0 0 0 0 0 0 34053 3879 35801 178756 180748 180748 1 TQLYEYLQNR ILHLCTQVIEISEYRTQLYEYLQNRMMAIA ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL R T Q N R M 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1326.6568 Q9Y2X3;H7BZ72 Q9Y2X3 269 278 NOP58 Nucleolar protein 58 yes no 2;3 4.7859E-05 137.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 6 4 1.1842 1.1549 29.7 17 Median 1.1738 1.1414 NaN 1 1 Median 1.3492 1.1706 NaN 1 0 Median 1.1059 1.086 7.9173 3 0 Median 0.84651 0.79883 49.223 2 0 Median 1.201 1.2044 12.764 6 0 Median 2.6524 2.2082 41.257 4 0 Linear 224890000 100510000 124380000 5022600 2380200 2642400 2994700 1320100 1674600 72612000 33191000 39420000 2990200 1336700 1653500 130880000 59180000 71702000 10386000 3099900 7286000 34054 4396 35802 178757;178758;178759;178760;178761;178762;178763;178764;178765;178766;178767;178768;178769;178770;178771;178772;178773 180749;180750;180751;180752;180753;180754;180755;180756;180757;180758;180759;180760;180761;180762;180763;180764;180765;180766;180767 180751 19 TQMAEVLPSPR QVGLPGKGGKAKGKKTQMAEVLPSPRGQRV KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K T Q P R G 1 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 0 1 0 0 11 0 1227.6282 P11388 P11388 1205 1215 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00091284 85.355 By matching By MS/MS By MS/MS 1 2 1 0.80473 0.74971 87.428 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38465 0.42875 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4789 1.5194 109.07 2 1 Median 0.96045 0.79996 NaN 1 0 Median 54490000 17229000 37261000 0 0 0 0 0 0 2626300 1822000 804290 0 0 0 50037000 14458000 35579000 1827000 949290 877730 34055 1963 35803;35804 178774;178775;178776;178777 180768;180769;180770;180771;180772 180772 747 5 TQMDGMSLLPILR LGPTILDIAGYDLNKTQMDGMSLLPILRGA NKTQMDGMSLLPILRGASNLTWRSDVLVEY K T Q L R G 0 1 0 1 0 1 0 1 0 1 3 0 2 0 1 1 1 0 0 0 0 0 13 0 1473.7684 P15586;H7C3P4;F6S8M0 P15586 389 401 GNS N-acetylglucosamine-6-sulfatase yes no 2 4.8978E-05 88.681 By MS/MS 1 0.81667 0.7064 NaN 1 Median NaN NaN NaN 0 0 Median 0.81667 0.7064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5792700 3144100 2648600 0 0 0 5792700 3144100 2648600 0 0 0 0 0 0 0 0 0 0 0 0 34056 2019 35805 178778 180773;180774 180774 2 TQMELLQAGLSR FILPNVSTPVSDAFKTQMELLQAGLSRTPT AFKTQMELLQAGLSRTPTRHLLNGSLVDGE K T Q S R T 1 1 0 0 0 2 1 1 0 0 3 0 1 0 0 1 1 0 0 0 0 0 12 0 1345.7024 Q9P2D1 Q9P2D1 2480 2491 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.0014871 81.771 By matching By MS/MS By MS/MS 1 1 1 1.1207 1.1026 6.8846 3 Median NaN NaN NaN 0 0 Median 1.1207 0.99784 NaN 1 0 Median 1.0835 1.1387 NaN 1 1 Median 1.2697 1.1026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20250000 9032100 11217000 0 0 0 1367100 593900 773170 18411000 8252800 10158000 471210 185450 285760 0 0 0 0 0 0 34057 4220 35806 178779;178780;178781 180775;180776 180775 2 TQMEMLTK LDQEMEQLNHHTTTRTQMEMLTKDKADKDE NHHTTTRTQMEMLTKDKADKDEQIRKIKSR R T Q T K D 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 0 2 0 0 0 0 0 8 0 980.46709 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7ESD9;A0A494C0Y7;H7C0P8 Q92878 536 543 RAD50 DNA repair protein RAD50 yes no 2 0.027049 41.448 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1532 1.1895 19.967 5 Median NaN NaN NaN 0 0 Median 1.381 1.1895 NaN 1 0 Median 0.78053 0.83692 NaN 1 0 Median 1.0417 0.94823 NaN 1 0 Median 1.1532 1.2204 NaN 1 0 Median 1.6268 1.3629 NaN 1 0 Median 14903000 7659800 7243300 0 0 0 3848300 1682000 2166300 7727300 4440000 3287300 1225800 500830 725000 1781000 903430 877530 320690 133540 187150 34058 3561 35807 178782;178783;178784;178785;178786 180777;180778 180777 2 TQMLDQEELLASTR DEEINQQSQLVEKLKTQMLDQEELLASTRR KTQMLDQEELLASTRRDQDNMQAELNRLQA K T Q T R R 1 1 0 1 0 2 2 0 0 0 3 0 1 0 0 1 2 0 0 0 0 0 14 0 1633.7981 P33176 P33176 451 464 KIF5B Kinesin-1 heavy chain yes yes 2 4.7755E-08 117.23 By MS/MS By MS/MS By MS/MS 2 1 1 1.0633 0.9961 24.463 4 Median 1.0278 0.9961 2.0578 2 1 Median 1.0774 0.90445 NaN 1 0 Median 1.4555 1.559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24259000 11203000 13056000 14564000 6753900 7810100 7168800 3347800 3821100 2526400 1101700 1424700 0 0 0 0 0 0 0 0 0 34059 2221 35808 178787;178788;178789;178790 180779;180780;180781 180779 3 TQMLDQEELLASTRR DEEINQQSQLVEKLKTQMLDQEELLASTRR TQMLDQEELLASTRRDQDNMQAELNRLQAE K T Q R R D 1 2 0 1 0 2 2 0 0 0 3 0 1 0 0 1 2 0 0 0 0 0 15 1 1789.8992 P33176 P33176 451 465 KIF5B Kinesin-1 heavy chain yes yes 3 0.04356 12.285 By MS/MS 1 1.4739 1.7926 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4739 1.7926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2775500 1085300 1690200 0 0 0 0 0 0 2775500 1085300 1690200 0 0 0 0 0 0 0 0 0 34060 2221 35809 178791 180782 180782 1 TQMNSFLLSTASQQEIATLDNK TACYDIDVEVDDTLKTQMNSFLLSTASQQE LSTASQQEIATLDNKIHETIETINQLKTQR K T Q N K I 2 0 2 1 0 3 1 0 0 1 3 1 1 1 0 3 3 0 0 0 0 0 22 0 2439.1952 Q96GM5;F8VRQ4 Q96GM5 402 423 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 3 0.0079054 21.37 By MS/MS 1 1.0503 1.0517 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0503 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5356100 2473700 2882400 0 0 0 0 0 0 5356100 2473700 2882400 0 0 0 0 0 0 0 0 0 34061 3659 35810 178792 180783;180784 180783 2 TQNDVLHAENVK ALSSELAQARDETKKTQNDVLHAENVKAGR TKKTQNDVLHAENVKAGRDKYKTLRQIRQG K T Q V K A 1 0 2 1 0 1 1 0 1 0 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1366.6841 P35241;A0A2R8Y5S7;A0A2R8Y4H6 P35241 545 556 RDX Radixin yes no 3 0.020349 36.284 By MS/MS By matching By matching By MS/MS 1 1 2 1 0.69397 0.7377 90.561 5 Median 0.94326 0.93574 NaN 1 0 Median 0.30546 0.29328 NaN 1 0 Median 0.98458 1.0478 49.62 2 0 Median 0.18454 0.1599 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11202000 7039900 4161700 1723900 715270 1008600 1145700 763280 382440 3774000 1695100 2078900 4558000 3866200 691740 0 0 0 0 0 0 34062 2235 35811 178793;178794;178795;178796;178797 180785;180786 180786 2 TQNPMVTGTSVLGVK FMDPASALYRGPITRTQNPMVTGTSVLGVK TQNPMVTGTSVLGVKFEGGVVIAADMLGSY R T Q V K F 0 0 1 0 0 1 0 2 0 0 1 1 1 0 1 1 3 0 0 3 0 0 15 0 1530.8076 P28070 P28070 46 60 PSMB4 Proteasome subunit beta type-4 yes yes 2;3 1.9295E-09 103.44 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 2 1 1 0.9687 0.89942 10.997 7 Median 0.9687 0.89942 6.1783 3 0 Median 1.1574 0.97838 NaN 1 0 Median 1.0425 0.9846 13.222 2 0 Median NaN NaN NaN 0 0 Median 0.75101 0.76591 NaN 1 0 Median NaN NaN NaN 0 0 Median 124640000 63955000 60689000 107820000 55801000 52016000 2739600 1160000 1579700 10627000 5125400 5501800 1498900 688080 810810 1961000 1180300 780750 0 0 0 34063 2160 35812;35813 178798;178799;178800;178801;178802;178803;178804;178805 180787;180788;180789;180790;180791;180792;180793;180794;180795;180796 180791 915 10 TQNVLGEK RVTPTRTEIIILATRTQNVLGEKGRRIREL IIILATRTQNVLGEKGRRIRELTAVVQKRF R T Q E K G 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 887.47125 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 55 62 RPS3 40S ribosomal protein S3 yes no 2 0.021331 45.738 By MS/MS By MS/MS 1 1 1.1528 1.0279 3.9341 2 Median 1.1361 1.0569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1698 0.99967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9668500 4395500 5273000 9009200 4084400 4924700 0 0 0 0 0 0 659350 311110 348250 0 0 0 0 0 0 34064 2112 35814 178806;178807 180797;180798;180799 180797 3 TQPAVATAATAAEK GGSLESDGCPKEPAKTQPAVATAATAAEKY KTQPAVATAATAAEKYKHRGEGERKDIVSS K T Q E K Y 6 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 14 0 1328.6936 P51608 P51608 436 449 MECP2 Methyl-CpG-binding protein 2 yes yes 2 0.00012567 81.431 By MS/MS By MS/MS By MS/MS 1 2 1 0.6706 0.65508 4.1258 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66497 0.68553 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63838 0.63364 2.3666 2 0 Median 0.79314 0.666 NaN 1 0 Median 19220000 10149000 9071200 0 0 0 0 0 0 7595200 3837000 3758200 0 0 0 10042000 5367500 4674400 1582700 944020 638660 34065 2437 35815 178808;178809;178810;178811 180800;180801;180802;180803;180804;180805 180804 6 TQPDGTSVPGEPASPISQR CEEGTPLSITSKLPRTQPDGTSVPGEPASP GTSVPGEPASPISQRLPPKVESLESLYFTP R T Q Q R L 1 1 0 1 0 2 1 2 0 1 0 0 0 0 4 3 2 0 0 1 0 0 19 0 1922.9334 A0A087WY61;Q14980 Q14980 1744 1762 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.2459E-18 137.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.61382 0.51078 19.86 5 Median NaN NaN NaN 0 0 Median 0.75358 0.64234 NaN 1 0 Median 0.40157 0.43772 NaN 1 0 Median 0.62041 0.54604 NaN 1 0 Median 0.37417 0.38423 NaN 1 0 Median 0.61382 0.51078 NaN 1 0 Median 51072000 35836000 15236000 0 0 0 3878900 2225900 1653000 28622000 20763000 7858800 4599800 2787000 1812700 11722000 8624300 3097700 2249100 1435300 813860 34066 2905;77 35816 178812;178813;178814;178815;178816 180806;180807;180808;180809;180810;180811;180812;180813;180814;180815;180816;180817;180818 180808 13 TQPMTAQAASYR AYRAQPSASLGVGYRTQPMTAQAASYRAQP GYRTQPMTAQAASYRAQPSVSLGAPYRGQL R T Q Y R A 3 1 0 0 0 2 0 0 0 0 0 0 1 0 1 1 2 0 1 0 0 0 12 0 1323.6241 Q96PK6 Q96PK6 263 274 RBM14 RNA-binding protein 14 yes yes 2 1.4483E-17 131.45 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 3 1.1628 1.0647 23.708 9 Median NaN NaN NaN 0 0 Median 0.90421 0.80427 39.671 2 0 Median 0.91004 0.91926 8.1146 2 0 Median 1.2766 1.0684 17.275 4 1 Median 1.1442 1.1485 NaN 1 1 Median NaN NaN NaN 0 0 Median 39732000 19168000 20563000 0 0 0 5156600 2545100 2611400 23385000 11639000 11746000 5777300 2272300 3505000 5412700 2711700 2701000 0 0 0 34067 3712 35817 178817;178818;178819;178820;178821;178822;178823;178824;178825;178826;178827 180819;180820;180821;180822;180823;180824;180825;180826;180827;180828;180829;180830 180823 12 TQPSSGVDSAVGTLPATSPQSTSVQAK VLAQKASEAQPPVARTQPSSGVDSAVGTLP TLPATSPQSTSVQAKGTNKLRKPKLPEVQQ R T Q A K G 3 0 0 1 0 3 0 2 0 0 1 1 0 0 3 6 4 0 0 3 0 0 27 0 2600.293 Q13428 Q13428 1094 1120 TCOF1 Treacle protein yes yes 3 1.0866E-31 101.71 By matching By MS/MS By MS/MS By matching 1 2 1 1 0.65093 0.65335 15.284 5 Median 0.52279 0.50207 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6449 0.70343 10.446 2 0 Median 0.69013 0.62403 NaN 1 0 Median 0.65093 0.68751 NaN 1 0 Median NaN NaN NaN 0 0 Median 48175000 28331000 19844000 5059800 2847400 2212400 0 0 0 37975000 22939000 15036000 2622300 1210200 1412100 2517300 1334100 1183200 0 0 0 34068 2816 35818 178828;178829;178830;178831;178832 180831;180832;180833;180834;180835 180832 5 TQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAK ISRQPLGATSGASLKTQPSSQPLQSGQVLP TPSAPPTSQQELQAKILSLFNSGTVTANSS K T Q A K I 3 0 0 0 0 7 1 1 0 0 3 1 0 0 7 6 4 0 0 1 0 0 34 0 3485.7638 Q9HCD5 Q9HCD5 401 434 NCOA5 Nuclear receptor coactivator 5 yes yes 3 1.4976E-05 30.306 By MS/MS By matching 1 1 0.27193 0.26926 16.678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29436 0.30297 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.2512 0.23931 NaN 1 0 Median NaN NaN NaN 0 0 Median 12429000 9789900 2638900 0 0 0 0 0 0 7893100 6509400 1383700 0 0 0 4535700 3280500 1255200 0 0 0 34069 4028 35819 178833;178834 180836 180836 1 TQQAAQANITLQEQIEAIHK EEKVTWDGHSGSMARTQQAAQANITLQEQI QANITLQEQIEAIHKAKGLVPEDDTKEKIG R T Q H K A 4 0 1 0 0 5 2 0 1 3 1 1 0 0 0 0 2 0 0 0 0 0 20 0 2234.1655 Q15459;H7C1L2 Q15459 512 531 SF3A1 Splicing factor 3A subunit 1 yes no 3 7.7028E-20 151.87 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 5 3 2 1.0954 1.0188 12.587 16 Median 1.0726 1.0448 1.7734 2 0 Median 1.1457 1.0152 6.9948 2 0 Median 1.1597 1.2338 14.775 2 0 Median 1.1492 1.006 12.68 5 0 Median 0.98993 0.96459 12.648 3 0 Median 1.0614 0.88959 5.8997 2 0 Median 216530000 100270000 116250000 17782000 7912900 9868600 3415800 1625600 1790200 104030000 49152000 54882000 13325000 6068500 7256100 74926000 34082000 40844000 3046300 1432700 1613600 34070 2954 35820 178835;178836;178837;178838;178839;178840;178841;178842;178843;178844;178845;178846;178847;178848;178849;178850 180837;180838;180839;180840;180841;180842;180843;180844;180845;180846;180847;180848;180849;180850;180851 180846 15 TQQGAALQNYNNELVK ______________________________ QQGAALQNYNNELVKCIEELCQKREELCRQ M T Q V K C 2 0 3 0 0 3 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 16 0 1789.8959 O43805;A0A087WV26 O43805 2 17 SSNA1 Sjoegren syndrome nuclear autoantigen 1 yes no 2 1.0142E-08 123.95 By MS/MS By matching By matching 1 1 1 0.99602 0.83578 50.096 3 Median 0.91668 0.83578 NaN 1 0 Median 2.1767 1.9833 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99602 0.8299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8736100 4216200 4519900 8283600 4040800 4242800 180300 55937 124370 0 0 0 272160 119430 152730 0 0 0 0 0 0 34071 1591 35821 178851;178852;178853 180852;180853 180853 2 TQQMLHGLQR SGGDQDQEERRWNKRTQQMLHGLQRALAKT RWNKRTQQMLHGLQRALAKTGAESISLLEL R T Q Q R A 0 1 0 0 0 3 0 1 1 0 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1210.6241 O60216;E5RFZ5;E5RI01 O60216 560 569 RAD21 Double-strand-break repair protein rad21 homolog yes no 3 0.0011374 54.066 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 1 1.1287 1.0224 22.757 7 Median NaN NaN NaN 0 0 Median 1.6769 1.53 NaN 1 0 Median 0.81947 0.87678 NaN 1 0 Median 1.1879 1.0224 NaN 1 0 Median 1.12 1.1702 17.075 3 1 Plateau 1.5776 1.3544 NaN 1 0 Median 19663000 10019000 9643300 0 0 0 674830 240700 434130 4228900 2435000 1793800 1145200 485510 659710 12128000 6246400 5881700 1485600 611670 873960 34072 1603 35822 178854;178855;178856;178857;178858;178859;178860;178861 180854;180855;180856;180857;180858;180859;180860;180861;180862;180863;180864 180854 11 TQQQVEAEVTNIKK QQVLRANQYKENHNRTQQQVEAEVTNIKKT RTQQQVEAEVTNIKKTLKATASSSAQEMEQ R T Q K K T 1 0 1 0 0 3 2 0 0 1 0 2 0 0 0 0 2 0 0 2 0 0 14 1 1614.8577 J3KQ34;Q9H9Q2;J3QT73;A0A087X1P5 J3KQ34 171 184 COPS7B COP9 signalosome complex subunit 7b yes no 3 0.000352 48.405 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.89726 0.86628 8.2897 4 Median 0.91027 0.88473 NaN 1 0 Median 0.8247 0.74284 NaN 1 0 Median 0.88444 0.88513 NaN 1 0 Median 0.966 0.84822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23709000 11627000 12082000 12236000 5824200 6412000 5155900 2654500 2501500 3355400 1649800 1705700 2961400 1498500 1462800 0 0 0 0 0 0 34073 1316 35823 178862;178863;178864;178865 180865;180866;180867 180865 3 TQQTSPDKVDYEYSELLLYQNQVLR EDYEMAAKILEEFRKTQQTSPDKVDYEYSE YEYSELLLYQNQVLREAGLYREALEHLCTY K T Q L R E 0 1 1 2 0 4 2 0 0 0 4 1 0 0 1 2 2 0 3 2 0 0 25 1 3029.4982 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 177 201 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 3 2.4361E-13 61.136 By MS/MS By matching By MS/MS 1 1 1 0.95492 0.99379 5.65 3 Median 0.95492 0.99379 NaN 1 0 Median 0.96886 0.97293 NaN 1 0 Median 0.95245 1.0825 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8525400 3949000 4576400 5156900 2396800 2760100 688160 302630 385530 2680400 1249600 1430800 0 0 0 0 0 0 0 0 0 34074 213 35824 178866;178867;178868 180868;180869;180870;180871 180869 4 TQQYDDLIDEFMK LKDPFYMGLYQKRDRTQQYDDLIDEFMKAI DRTQQYDDLIDEFMKAITDRYGRNTLIQFE R T Q M K A 0 0 0 3 0 2 1 0 0 1 1 1 1 1 0 0 1 0 1 0 0 0 13 0 1644.7341 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37 A0A1W2PPH1 228 240 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.01532 33.409 By MS/MS By matching 1 1 1.2988 1.1923 13.376 2 Median 1.123 1.0847 NaN 1 0 Median 1.5021 1.3106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3061500 1397900 1663600 2086600 1016300 1070300 974890 381620 593270 0 0 0 0 0 0 0 0 0 0 0 0 34075 337 35825 178869;178870 180872 180872 1 TQRPADVIFATVR MSKDSLLGDKGQTARTQRPADVIFATVREL ARTQRPADVIFATVRELVSGGRSVRFSEAE R T Q V R E 2 2 0 1 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 2 0 0 13 1 1472.81 P33993 P33993 654 666 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 3.9463E-06 101.89 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 2 3 1 1 0.83825 0.87222 23.588 10 Median 0.85875 0.88047 14.702 3 0 Median 1.0349 1.0239 1.9178 2 0 Median 0.71866 0.80196 28.55 3 0 Median 1.2054 1.0681 NaN 1 0 Median 0.63247 0.6872 NaN 1 0 Median NaN NaN NaN 0 0 Median 181830000 98531000 83301000 97437000 52152000 45285000 18956000 8951700 10004000 61998000 35570000 26429000 563860 227880 335980 2877700 1630000 1247700 0 0 0 34076 2225 35826 178871;178872;178873;178874;178875;178876;178877;178878;178879;178880 180873;180874;180875;180876;180877;180878;180879;180880;180881;180882;180883;180884 180882 12 TQSGLQSYLLQFHGLVR IIQLQPLQEPESWARTQSGLQSYLLQFHGL SGLQSYLLQFHGLVRLVHQERTLAFPLTIR R T Q V R L 0 1 0 0 0 3 0 2 1 0 4 0 0 1 0 2 1 0 1 1 0 0 17 0 1946.0374 Q9UNN8;A0A0U1RQQ4 Q9UNN8 82 98 PROCR Endothelial protein C receptor yes no 3 5.7462E-06 64.136 By MS/MS 1 1.4051 1.2214 NaN 1 Median NaN NaN NaN 0 0 Median 1.4051 1.2214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5132300 2148000 2984200 0 0 0 5132300 2148000 2984200 0 0 0 0 0 0 0 0 0 0 0 0 34077 4346 35827 178881 180885 180885 1 TQSQLAVQIR EQMVQNAEDVYEAVRTQSQLAVQIRRGRET YEAVRTQSQLAVQIRRGRETLTLYVTPEVT R T Q I R R 1 1 0 0 0 3 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1142.6408 A0A0C4DG44;O43464 A0A0C4DG44 398 407 HTRA2 Serine protease HTRA2, mitochondrial yes no 2 6.7536E-05 133.58 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3559 1.1963 13.64 4 Median 1.1666 1.092 NaN 1 0 Median 1.5759 1.3105 NaN 1 0 Median 1.073 1.0607 NaN 1 0 Median 1.6764 1.4015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39174000 15469000 23705000 16863000 6916800 9946300 14878000 5561000 9317100 6043400 2546400 3497000 1389300 444870 944430 0 0 0 0 0 0 34078 234 35828 178882;178883;178884;178885 180886;180887;180888;180889;180890 180889 5 TQSSASLAASYAAQQHPQAAASYR AYGAQPSATLAAPYRTQSSASLAASYAAQQ SYAAQQHPQAAASYRGQPGNAYDGAGQPSA R T Q Y R G 8 1 0 0 0 4 0 0 1 0 1 0 0 0 1 5 1 0 2 0 0 0 24 0 2464.1731 Q96PK6 Q96PK6 518 541 RBM14 RNA-binding protein 14 yes yes 2;3;4 1.3048E-38 162.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 7 4 7 3 0.97807 0.88489 20.459 29 Median 0.97807 0.94203 15.936 3 1 Median 1.3886 1.1793 24.738 5 0 Median 0.81257 0.80856 18.217 7 0 Median 1.1825 0.99378 16.029 4 0 Linear 0.85474 0.84663 10.506 7 0 Median 1.0829 0.89213 11.888 3 0 Median 858240000 448990000 409250000 17871000 9451200 8419900 11580000 5342900 6237500 313520000 168880000 144640000 20813000 9974100 10839000 482070000 249680000 232390000 12384000 5660900 6722800 34079 3712 35829 178886;178887;178888;178889;178890;178891;178892;178893;178894;178895;178896;178897;178898;178899;178900;178901;178902;178903;178904;178905;178906;178907;178908;178909;178910;178911;178912;178913;178914 180891;180892;180893;180894;180895;180896;180897;180898;180899;180900;180901;180902;180903;180904;180905;180906;180907;180908;180909;180910;180911;180912;180913;180914;180915;180916;180917;180918;180919;180920;180921;180922;180923;180924;180925;180926 180906 36 TQSSLVPALTDFVR KGKIEEDSEVLMMIKTQSSLVPALTDFVRS KTQSSLVPALTDFVRSVHPYEVAESCHDEP K T Q V R S 1 1 0 1 0 1 0 0 0 0 2 0 0 1 1 2 2 0 0 2 0 0 14 0 1532.8199 C9IZG4;O60888 C9IZG4 102 115 CUTA Protein CutA yes no 2 7.2619E-11 170.04 By MS/MS By MS/MS By MS/MS 2 2 1 0.92911 0.90109 3.8935 5 Median 0.92439 0.8899 1.7661 2 0 Median 1.0598 0.89337 5.8306 2 0 Median 0.92821 0.94115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92829000 46012000 46817000 51924000 26533000 25391000 33269000 15570000 17699000 7636500 3909700 3726700 0 0 0 0 0 0 0 0 0 34080 664 35830 178915;178916;178917;178918;178919 180927;180928;180929;180930;180931;180932;180933;180934;180935;180936;180937;180938;180939;180940;180941;180942;180943 180943 17 TQSTWVDSFFR GRQDKAVFVPDIYSRTQSTWVDSFFRQNGY IYSRTQSTWVDSFFRQNGYLEFDALSRLGI R T Q F R Q 0 1 0 1 0 1 0 0 0 0 0 0 0 2 0 2 2 1 0 1 0 0 11 0 1372.6412 O94874 O94874 252 262 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.0025641 52.79 By MS/MS By matching By matching 1 1 1 1.2105 1.189 15.289 3 Median 0.9772 0.96174 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2105 1.2941 NaN 1 0 Median 1.4428 1.189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3606600 1660300 1946300 2330200 1119300 1210900 0 0 0 1163600 498960 664670 112840 42086 70758 0 0 0 0 0 0 34081 1732 35831 178920;178921;178922 180944;180945 180945 2 TQTAIASEDMPNTLTEAEK QFLRDLDDFQSWLSRTQTAIASEDMPNTLT IASEDMPNTLTEAEKLLTQHENIKNEIDNY R T Q E K L 3 0 1 1 0 1 3 0 0 1 1 1 1 0 1 1 4 0 0 0 0 0 19 0 2048.9572 Q01082;A0A087WUZ3 Q01082 1081 1099 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 2.413E-30 183 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 2 2 0.86928 0.82881 11.67 17 Median 0.96657 0.94511 7.2901 2 0 Median 1.0128 0.88328 9.0651 3 0 Median 0.75573 0.82919 13.183 4 0 Median 0.86099 0.77457 3.929 4 0 Median 0.81502 0.85417 13.777 2 0 Median 0.83156 0.71272 3.5608 2 0 Median 269020000 142540000 126480000 37704000 18101000 19602000 19197000 8571600 10625000 167570000 92642000 74932000 17260000 8811000 8449100 24855000 13132000 11722000 2426000 1280400 1145600 34082 2681 35832;35833 178923;178924;178925;178926;178927;178928;178929;178930;178931;178932;178933;178934;178935;178936;178937;178938;178939 180946;180947;180948;180949;180950;180951;180952;180953;180954;180955;180956;180957;180958;180959;180960;180961;180962;180963;180964;180965;180966;180967;180968;180969;180970 180949 1381 25 TQTAISVVEEDLK EKMKNQIKQMMDVSRTQTAISVVEEDLKLL SRTQTAISVVEEDLKLLQLKLRASVSTKCN R T Q L K L 1 0 0 1 0 1 2 0 0 1 1 1 0 0 0 1 2 0 0 2 0 0 13 0 1431.7457 Q5JRA6;A0A0A0MRH6 Q5JRA6 1460 1472 MIA3 Melanoma inhibitory activity protein 3 yes no 2 0.0029333 62.408 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34083 3049 35834 178940 180971 180971 1 TQTAVASEEGPATLPEAEALLAQHAALR DFLRSLDDFQAWLGRTQTAVASEEGPATLP LPEAEALLAQHAALRGEVERAQSEYSRLRA R T Q L R G 8 1 0 0 0 2 4 1 1 0 4 0 0 0 2 1 3 0 0 1 0 0 28 0 2844.4618 O15020 O15020 1084 1111 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 2.3544E-09 47.38 By matching By MS/MS By matching 1 1 1 0.72684 0.61548 4.6232 3 Median NaN NaN NaN 0 0 Median 0.72684 0.61548 NaN 1 0 Median 0.53923 0.59297 NaN 1 0 Median 0.75095 0.65006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7433200 4504300 2928800 0 0 0 1402000 692980 709030 5888700 3746700 2142000 142430 64638 77797 0 0 0 0 0 0 34084 1512 35835 178941;178942;178943 180972;180973 180973 2 TQTFSGDFMHR QTSSKLFQNCSELFKTQTFSGDFMHRLPLL ELFKTQTFSGDFMHRLPLLGEKQEAKENGT K T Q H R L 0 1 0 1 0 1 0 1 1 0 0 0 1 2 0 1 2 0 0 0 0 0 11 0 1325.5823 Q8NBN3 Q8NBN3 134 144 TMEM87A Transmembrane protein 87A yes yes 3 0.023962 42.976 By matching By MS/MS 1 1 1.2312 1.1411 1.5741 2 Median 1.1157 1.1284 NaN 1 0 Median 1.3587 1.1538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6705700 2783300 3922500 3058500 1349600 1709000 3647200 1433700 2213500 0 0 0 0 0 0 0 0 0 0 0 0 34085 3408 35836 178944;178945 180974 180974 0 TQTILFYGR FNANHPFLFFIRHNKTQTILFYGRVCSP__ FIRHNKTQTILFYGRVCSP___________ K T Q G R V 0 1 0 0 0 1 0 1 0 1 1 0 0 1 0 0 2 0 1 0 0 0 9 0 1097.5869 Q96P63 Q96P63 393 401 SERPINB12 Serpin B12 yes yes 2 0.0052544 72.485 By MS/MS By MS/MS 1 1 0.016303 0.013187 NaN 1 Median NaN NaN NaN 0 0 Median 0.016303 0.013187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2801800 2772100 29685 0 0 0 1530000 1500400 29685 0 0 0 1271700 1271700 0 0 0 0 0 0 0 34086 3710 35837 178946;178947 180975;180976 180975 2 TQTPPLGQTPQLGLK QPQITMIPPSAQPPRTQTPPLGQTPQLGLK TQTPPLGQTPQLGLKTNPPLIQEKPAKTSK R T Q L K T 0 0 0 0 0 3 0 2 0 0 3 1 0 0 3 0 3 0 0 0 0 0 15 0 1577.8777 P78344;D3DQV9;H0Y3P2;E9PKF8 P78344 506 520 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 3.3769E-06 90.146 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.59696 0.53994 14.932 5 Median 0.56817 0.55133 NaN 1 0 Median 0.55289 0.48687 7.2397 2 0 Median 0.63612 0.69391 NaN 1 0 Median 0.63256 0.53994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12661000 8114300 4546400 7862000 4995200 2866700 1597400 955980 641430 2845200 1920200 924960 356140 242900 113240 0 0 0 0 0 0 34087 2639 35838 178948;178949;178950;178951;178952 180977;180978 180977 2 TQTPPVSPAPQPTEER QEEARRKLEEQARAKTQTPPVSPAPQPTEE QTPPVSPAPQPTEERLPSSPVYEDAASFKA K T Q E R L 1 1 0 0 0 2 2 0 0 0 0 0 0 0 5 1 3 0 0 1 0 0 16 0 1733.8584 Q14247;H0YEV2;H0YCD9 Q14247 399 414 CTTN Src substrate cortactin yes no 2 0.00012702 65.563 By MS/MS 1 0.59169 0.5109 NaN 1 Median NaN NaN NaN 0 0 Median 0.59169 0.5109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1624300 1095000 529350 0 0 0 1624300 1095000 529350 0 0 0 0 0 0 0 0 0 0 0 0 34088 2868 35839 178953 180979 180979 1 TQTQRPNLIGLTSGDMDVNPR ITSSGRSQYRQFFSRTQTQRPNLIGLTSGD NLIGLTSGDMDVNPRAANIVIQTEPPVPVS R T Q P R A 0 2 2 2 0 2 0 2 0 1 2 0 1 0 2 1 3 0 0 1 0 0 21 1 2312.1543 Q9P2N5;U3KPZ7 Q9P2N5 511 531 RBM27 RNA-binding protein 27 yes no 3 1.1045E-13 82.635 By MS/MS 2 0.46648 0.56734 35.53 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46648 0.56734 35.53 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15947000 11026000 4920400 0 0 0 0 0 0 15947000 11026000 4920400 0 0 0 0 0 0 0 0 0 34089 4227 35840;35841 178954;178955 180980;180981 180981 1904 2 TQTSDPAMLPTMIGLLAEAGVR PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL MLPTMIGLLAEAGVRLLSYQTSLVSDGETW R T Q V R L 3 1 0 1 0 1 1 2 0 1 3 0 2 0 2 1 3 0 0 1 0 0 22 0 2271.1603 A0A286YF22;O43175;A0A286YFA2 A0A286YF22 463 484 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.042986 18.596 By matching By matching By MS/MS 2 1 1 0.78995 0.97127 19.353 4 Linear 0.67909 0.65616 6.2598 2 0 Median 1.0155 0.89521 NaN 1 0 Median 0.88687 0.92745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1794600 935380 859190 474760 270040 204720 518110 252080 266030 801690 413260 388440 0 0 0 0 0 0 0 0 0 34090 351 35842 178956;178957;178958;178959 180982 180982 1 TQTVQAHYVLK FVYLEPLPRELPCGKTQTVQAHYVLKGQVL PCGKTQTVQAHYVLKGQVLKDLKELVFYYL K T Q L K G 1 0 0 0 0 2 0 0 1 0 1 1 0 0 0 0 2 0 1 2 0 0 11 0 1286.6983 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 473 483 yes yes 2;3 1.6124E-05 126.24 By MS/MS By MS/MS 2 6 0.029558 0.02546 NaN 1 Median NaN NaN NaN 0 0 Median 0.029558 0.02546 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23017000 22905000 111510 4455300 4455300 0 18561000 18450000 111510 0 0 0 0 0 0 0 0 0 0 0 0 + 34091 734 35843 178960;178961;178962;178963;178964;178965;178966;178967 180983;180984;180985;180986;180987;180988;180989;180990 180990 8 TQVAGGQLSFK MASEDIAKLAETLAKTQVAGGQLSFKGKSL TLAKTQVAGGQLSFKGKSLKLNTAEDAKDV K T Q F K G 1 0 0 0 0 2 0 2 0 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1134.6033 P46060;B0QYT5;B0QYT4;B0QYT6 P46060 16 26 RANGAP1 Ran GTPase-activating protein 1 yes no 2 0.00019398 95.483 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 4 3 1 2 1.106 1.0105 59.622 13 Median 1.1565 1.0577 NaN 1 0 Median 1.0728 0.91965 7.0629 2 1 Median 1.168 1.1471 9.4611 4 1 Median 1.0353 0.89672 125.97 3 0 Median 0.95003 1.087 NaN 1 0 Median 0.97388 0.80334 28.706 2 0 Median 107400000 51044000 56360000 8572700 4015800 4556800 13498000 6587600 6910600 60124000 27162000 32961000 10922000 4642200 6279900 8754700 5737300 3017500 5532600 2898300 2634300 34092 2336 35844 178968;178969;178970;178971;178972;178973;178974;178975;178976;178977;178978;178979;178980 180991;180992;180993;180994;180995;180996;180997;180998;180999;181000;181001;181002;181003;181004 180993 14 TQVDAQLQVVR KEEKEELADQVLTLKTQVDAQLQVVRKLEE LTLKTQVDAQLQVVRKLEEKEHLLQSNIGT K T Q V R K 1 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 11 0 1255.6884 Q5VTR2 Q5VTR2 793 803 RNF20 E3 ubiquitin-protein ligase BRE1A yes yes 2 0.0001186 135.43 By MS/MS By MS/MS 1 1 1.2308 1.1869 1.9461 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0948 1.2034 NaN 1 0 Median 1.3836 1.1707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43600000 18182000 25417000 0 0 0 0 0 0 27757000 11236000 16521000 15842000 6945900 8896300 0 0 0 0 0 0 34093 3112 35845 178981;178982 181005;181006;181007 181007 3 TQVEASEESALNHLQNPGDAAEGR RSKLWEMDNMLIQIKTQVEASEESALNHLQ ALNHLQNPGDAAEGRAAKRCEKAEEKAKEI K T Q G R A 4 1 2 1 0 2 4 2 1 0 2 0 0 0 1 2 1 0 0 1 0 0 24 0 2522.1633 Q9Y605;A0A087WTY9 Q9Y605 69 92 MRFAP1 MORF4 family-associated protein 1 yes no 3 3.9129E-20 88.79 By MS/MS 1 0.80517 0.81441 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80517 0.81441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20461000 10982000 9478800 0 0 0 0 0 0 20461000 10982000 9478800 0 0 0 0 0 0 0 0 0 34094 4474 35846 178983 181008;181009 181008 2 TQVELLEAPTPALKR DNYFLVGPYTEQGVRTQVELLEAPTPALKR TQVELLEAPTPALKRTLDSMNSKGCKVYFG R T Q K R T 2 1 0 0 0 1 2 0 0 0 3 1 0 0 2 0 2 0 0 1 0 0 15 1 1664.9461 P13807 P13807 75 89 GYS1 Glycogen [starch] synthase, muscle yes yes 3 0.00064015 37.77 By MS/MS By matching 1 1 0.72157 0.73094 18.759 2 Median 0.62362 0.64014 NaN 1 0 Median 0.83491 0.83462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10382000 6243600 4138400 8126500 5106700 3019900 2255400 1137000 1118500 0 0 0 0 0 0 0 0 0 0 0 0 34095 1997 35847 178984;178985 181010 181010 1 TQVELVADPETR GRGPLTQVTDRKCSRTQVELVADPETRTVA CSRTQVELVADPETRTVAVKQLGVNPSTTG R T Q T R T 1 1 0 1 0 1 2 0 0 0 1 0 0 0 1 0 2 0 0 2 0 0 12 0 1356.6885 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1;A0A0D9SEV0;M0R000;A0A1B0GU66 M0QYH2 49 60 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 1.8085E-29 167.09 By MS/MS By MS/MS 1 2 0.91858 0.78681 5.9207 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72754 0.72327 NaN 1 1 Median 0.93255 0.7987 2.1213 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34957000 18650000 16307000 0 0 0 0 0 0 20104000 11856000 8248300 14853000 6793700 8059100 0 0 0 0 0 0 34096 1418 35848 178986;178987;178988 181011;181012;181013 181011 3 TQVLIKPKPVTFQATVVSEQTR AKIIPTKIVYGQQGKTQVLIKPKPVTFQAT KPVTFQATVVSEQTRQLVTETLQQASRVAE K T Q T R Q 1 1 0 0 0 3 1 0 0 1 1 2 0 1 2 1 4 0 0 4 0 0 22 2 2469.3955 E9PMC9;Q7Z589;H0YCS3 E9PMC9 580 601 C11orf30;EMSY Protein EMSY yes no 3 2.4727E-12 69.947 By MS/MS 1 0.56931 0.64872 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56931 0.64872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8469400 5613900 2855400 0 0 0 0 0 0 8469400 5613900 2855400 0 0 0 0 0 0 0 0 0 34097 966 35849 178989 181014 181014 1 TQVLSPDSLFTAK GAPPPPPQRNASYLKTQVLSPDSLFTAKFV LKTQVLSPDSLFTAKFVAYNEEEEEEDCSL K T Q A K F 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 2 2 0 0 1 0 0 13 0 1405.7453 J3KN01;P55196;A8MQ02;H0Y948;H0Y8L4 J3KN01 1724 1736 MLLT4 Afadin yes no 2 0.0025189 47.559 By matching By MS/MS 1 1 0.99374 1.0204 3.4725 2 Median 1.0508 0.99568 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93974 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4503300 2635600 1867700 2405700 1436600 969100 0 0 0 2097700 1199100 898590 0 0 0 0 0 0 0 0 0 34098 1300 35850 178990;178991 181015 181015 1 TQVSLKDQITSGK LFICLSGYPPFSEHRTQVSLKDQITSGKYN HRTQVSLKDQITSGKYNFIPEVWAEVSEKA R T Q G K Y 0 0 0 1 0 2 0 1 0 1 1 2 0 0 0 2 2 0 0 1 0 0 13 1 1403.762 O96017 O96017 432 444 CHEK2 Serine/threonine-protein kinase Chk2 yes yes 2 0.021059 40.589 By MS/MS 1 0.84148 0.80297 NaN 1 Median 0.84148 0.80297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1597300 839260 758040 1597300 839260 758040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34099 1808 35851 178992 181016 181016 1 TQVTVQYMQDR LRRNGTLPWLRPDSKTQVTVQYMQDRGAVL PDSKTQVTVQYMQDRGAVLPIRVHTIVISV K T Q D R G 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 2 0 1 2 0 0 11 0 1367.6503 P31153 P31153 182 192 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2 3.0523E-48 205.09 By MS/MS By MS/MS By MS/MS 5 2 3 1.1005 1.078 67.957 10 Median 1.1436 1.1384 3.5965 5 2 Median 0.79813 0.69321 39.274 2 0 Median 0.59229 0.59444 133.64 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 303800000 140030000 163780000 214940000 99199000 115740000 55675000 29423000 26252000 33194000 11405000 21789000 0 0 0 0 0 0 0 0 0 34100 2202 35852;35853 178993;178994;178995;178996;178997;178998;178999;179000;179001;179002 181017;181018;181019;181020;181021;181022;181023;181024;181025;181026;181027 181022 937 11 TQVVAGTNYYIK KTNETYGKLEAVQYKTQVVAGTNYYIKVRA QYKTQVVAGTNYYIKVRAGDNKYMHLKVFK K T Q I K V 1 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 2 0 2 2 0 0 12 0 1355.7085 P01040;C9J0E4 P01040 45 56 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes no 2 4.6769E-25 153.97 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 10 1 1 0.081212 0.069554 156.23 20 Median 0.86514 0.79126 137.85 3 2 Median 0.02507 0.021237 159.01 2 2 Median 0.19553 0.19791 216.55 4 4 Median 0.076249 0.064237 55.479 9 8 Median 0.25007 0.26206 NaN 1 1 Median 0.040414 0.032925 NaN 1 1 Median 124470000 80422000 44045000 22010000 10978000 11032000 7279800 7000000 279750 47267000 17844000 29423000 39232000 37150000 2081200 5448000 4383600 1064400 3230400 3065200 165140 34101 1830 35854 179003;179004;179005;179006;179007;179008;179009;179010;179011;179012;179013;179014;179015;179016;179017;179018;179019;179020;179021;179022;179023;179024;179025 181028;181029;181030;181031;181032;181033;181034;181035;181036;181037;181038;181039;181040;181041;181042;181043;181044;181045;181046;181047;181048;181049 181038 22 TQYHMGYFR YDPPEFQTIIIGDNKTQYHMGYFRDSPDEF IIGDNKTQYHMGYFRDSPDEFPVYVGINEA K T Q F R D 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 1 0 2 0 0 0 9 0 1201.5339 Q9NWY4 Q9NWY4 125 133 C4orf27 UPF0609 protein C4orf27 yes yes 3 0.0030105 47.603 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3686 1.2718 6.6814 4 Median 1.2265 1.2408 NaN 1 0 Median 1.4131 1.2561 NaN 1 0 Median 1.3256 1.4365 NaN 1 0 Median 1.4648 1.2877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7940900 3400000 4540900 1741100 861130 879960 399120 179280 219840 5082400 2043800 3038600 718330 315770 402560 0 0 0 0 0 0 34102 4153 35855 179026;179027;179028;179029 181050;181051;181052 181051 3 TQYNQVPSEDFER SLGSMSPSNMEGYSKTQYNQVPSEDFERTP SKTQYNQVPSEDFERTPQSPTLPPAKVAAP K T Q E R T 0 1 1 1 0 2 2 0 0 0 0 0 0 1 1 1 1 0 1 1 0 0 13 0 1611.7165 P78310 P78310 316 328 CXADR Coxsackievirus and adenovirus receptor yes yes 2 0.0025189 47.559 By MS/MS By matching 1 1 1.1133 1.0362 2.3955 2 Median 1.0664 1.0539 NaN 1 0 Median 1.1623 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4956700 1605000 3351800 4308900 1335500 2973400 647890 269530 378370 0 0 0 0 0 0 0 0 0 0 0 0 34103 2636 35856 179030;179031 181053;181054 181053 2 TQYSSAMLESLLPGIR DQWVKLNLGTVGFYRTQYSSAMLESLLPGI QYSSAMLESLLPGIRDLSLPPVDRLGLQND R T Q I R D 1 1 0 0 0 1 1 1 0 1 3 0 1 0 1 3 1 0 1 0 0 0 16 0 1764.908 E9PLK3;P55786;H0YCQ5 E9PLK3 587 602 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 5.2754E-10 105.65 By MS/MS By MS/MS By matching 1 1 1 1.0937 0.95305 10.099 3 Plateau 0.92102 0.88911 NaN 1 0 Median 1.1018 0.95305 NaN 1 0 Median 0.73497 0.78109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39341000 18996000 20344000 7434200 4015100 3419100 31059000 14518000 16540000 848030 462820 385210 0 0 0 0 0 0 0 0 0 34104 960 35857 179032;179033;179034 181055;181056;181057;181058;181059 181058 5 TRAEAEAAAVHGAR CQIDDSSLHAVITFKTRAEAEAAAVHGARF KTRAEAEAAAVHGARFKGQDLKLAWNKPVT K T R A R F 6 2 0 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 14 1 1408.7171 Q5T8P6 Q5T8P6 934 947 RBM26 RNA-binding protein 26 no no 3 0.00017929 67.115 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.94879 1.0256 27.823 4 Median 1.3668 1.5185 NaN 1 0 Median 0.80951 0.78044 NaN 1 1 Median 0.79438 0.96614 NaN 1 0 Median 1.112 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3188600 1662500 1526200 361940 161200 200730 1323700 689470 634200 1188300 684440 503850 314740 127360 187390 0 0 0 0 0 0 34105 3097 35858 179035;179036;179037;179038 181060;181061;181062 181061 3 TRAEVKFEGDTLVNR VQERTIFYKDDGNYKTRAEVKFEGDTLVNR TRAEVKFEGDTLVNRIELKGIDFKEDGNIL K T R N R I 1 2 1 1 0 0 2 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 15 2 1733.906 CON__Q9U6Y5;P37840 P37840 248 262 SNCA Alpha-synuclein no no 3 1.534E-05 83.856 By MS/MS By matching By MS/MS 4 1 1 1.0718 1.167 24.894 5 Median 1.0911 1.1799 13.583 4 0 Median 0.74461 0.68959 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58101000 21375000 36726000 51628000 20500000 31128000 1861400 875010 986400 0 0 0 0 0 0 4611400 0 4611400 0 0 0 + 34106 2271;795 35859 179039;179040;179041;179042;179043;179044 181063;181064;181065;181066;181067;181068;181069;181070 181065 8 TRDELEVIHLIEEHR EKLLKYLEAVEKVKRTRDELEVIHLIEEHR TRDELEVIHLIEEHRLVREHLLTNHLKSKE R T R H R L 0 2 0 1 0 0 4 0 2 2 2 0 0 0 0 0 1 0 0 1 0 0 15 1 1887.9803 P10155 P10155 238 252 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 4 0.062157 10.854 By matching By MS/MS 1 1 0.99466 1.0388 6.4114 2 Median 0.98307 0.99275 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0064 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3418500 1713800 1704700 1397400 799710 597710 0 0 0 2021000 914060 1107000 0 0 0 0 0 0 0 0 0 34107 1934 35860 179045;179046 181071 181071 1 TREEECHFYAGGQVYPGEASR PAGAVQGWETEERPRTREEECHFYAGGQVY HFYAGGQVYPGEASRVSVADHSLHLSKAKI R T R S R V 2 2 0 0 1 1 4 3 1 0 0 0 0 1 1 1 1 0 2 1 0 0 21 1 2442.0659 Q13162;A6NG45 Q13162 46 66 PRDX4 Peroxiredoxin-4 yes no 3;4 1.1985E-25 133.38 By matching By MS/MS 2 2 1.0085 0.96089 14.179 4 Median 0.78226 0.83618 10.298 2 0 Median 1.229 1.0437 2.3363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77328000 35152000 42176000 11100000 5537300 5563000 66228000 29615000 36613000 0 0 0 0 0 0 0 0 0 0 0 0 34108 2793 35861 179047;179048;179049;179050 181072;181073;181074;181075 181073 4 TREEIQEVR RYHGHSMSDPGVSYRTREEIQEVRSKSDPI PGVSYRTREEIQEVRSKSDPIMLLKDRMVN R T R V R S 0 2 0 0 0 1 3 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 9 1 1158.5993 P08559;Q5JPU3;P29803 P08559 303 311 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial yes no 2 0.0033131 103.7 By matching By MS/MS 1 1 1.1438 1.1339 14.737 2 Median 0.97099 1.0216 NaN 1 0 Median 1.3475 1.2584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8561600 4056000 4505600 3514800 1733700 1781100 5046700 2322300 2724400 0 0 0 0 0 0 0 0 0 0 0 0 34109 1902 35862 179051;179052 181076;181077 181077 2 TREGNDLYHEMIESGVINLK KAHGGYSVFAGVGERTREGNDLYHEMIESG DLYHEMIESGVINLKDATSKVALVYGQMNE R T R L K D 0 1 2 1 0 0 3 2 1 2 2 1 1 0 0 1 1 0 1 1 0 0 20 1 2317.1372 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 240 259 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 3;4 3.7968E-08 61.648 By MS/MS By MS/MS By matching 2 2 2 1.0468 1.0507 17.729 6 Median 0.95837 0.95472 6.5774 2 0 Median 1.3256 1.2088 11.04 2 0 Median 0.92014 0.93133 24.034 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73996000 34416000 39580000 33548000 16653000 16894000 35155000 14890000 20265000 5293400 2873300 2420100 0 0 0 0 0 0 0 0 0 34110 1872 35863 179053;179054;179055;179056;179057;179058 181078;181079;181080;181081 181080 4 TREPLILEEER VVSSSHDKSLRLWERTREPLILEEEREMER LWERTREPLILEEEREMEREAEYEESVAKE R T R E R E 0 2 0 0 0 0 4 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 11 1 1383.7358 Q9UNX4 Q9UNX4 705 715 WDR3 WD repeat-containing protein 3 yes yes 3 0.0011557 68.676 By MS/MS By MS/MS 2 1 1.0075 1.1642 29.352 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91126 1.0529 14.202 2 2 Median 1.7342 1.6978 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24359000 12060000 12300000 0 0 0 0 0 0 20395000 10573000 9822300 3963900 1486600 2477200 0 0 0 0 0 0 34111 4351 35864 179059;179060;179061 181082;181083;181084 181083 3 TRESAWTKPDGVK ENKTPDGKVYYYNARTRESAWTKPDGVKVI ARTRESAWTKPDGVKVIQQSELTPMLAAQA R T R V K V 1 1 0 1 0 0 1 1 0 0 0 2 0 0 1 1 2 1 0 1 0 0 13 2 1473.7576 O14776;G3V220 O14776 154 166 TCERG1 Transcription elongation regulator 1 yes no 3 0.063618 13.746 By MS/MS 1 0.7814 0.89039 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7814 0.89039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2459500 1369200 1090300 0 0 0 0 0 0 2459500 1369200 1090300 0 0 0 0 0 0 0 0 0 34112 1494 35865 179062 181085 181085 1 TRIEGLLAAFPK AGKAIVSRQFVEMTRTRIEGLLAAFPKLMN MTRTRIEGLLAAFPKLMNTGKQHTFVETES R T R P K L 2 1 0 0 0 0 1 1 0 1 2 1 0 1 1 0 1 0 0 0 0 0 12 1 1314.766 B0YIW6;P48444;Q6P1Q5;E9PK34 B0YIW6 68 79 ARCN1 Coatomer subunit delta yes no 3 0.0096251 28.327 By MS/MS By matching 1 2 1.0142 1.002 9.6413 3 Median 0.99265 1.002 NaN 1 0 Median 1.1122 1.0178 13.575 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5646900 2658500 2988400 3073500 1433800 1639700 2573400 1224800 1348600 0 0 0 0 0 0 0 0 0 0 0 0 34113 561 35866 179063;179064;179065 181086 181086 1 TRLELEENQMK KKLKYYTGNYDQYVKTRLELEENQMKRFHW QYVKTRLELEENQMKRFHWEQDQIAHMKNY K T R M K R 0 1 1 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1389.6922 Q9UG63 Q9UG63 316 326 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2;3 0.00019369 66.267 By MS/MS By MS/MS By MS/MS 2 2 2 1.2601 1.2436 41.097 6 Median NaN NaN NaN 0 0 Median 1.0781 0.98823 31.088 2 0 Median 1.4064 1.4931 24.428 2 1 Median 1.2745 1.1686 71.823 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19697000 8507900 11189000 0 0 0 6470200 2996500 3473700 7984300 2953700 5030600 5242900 2557700 2685100 0 0 0 0 0 0 34114 4262 35867 179066;179067;179068;179069;179070;179071 181087;181088;181089;181090;181091 181091 5 TRLELEENQMKR KKLKYYTGNYDQYVKTRLELEENQMKRFHW YVKTRLELEENQMKRFHWEQDQIAHMKNYI K T R K R F 0 2 1 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 12 2 1545.7933 Q9UG63 Q9UG63 316 327 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 3 0.00011212 81.494 By MS/MS 1 1.5196 1.534 NaN 1 Median 1.5196 1.534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2464000 963070 1500900 2464000 963070 1500900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34115 4262 35868 179072 181092;181093 181092 2 TRLEQEIATYR MEQQNQEYKILLDVKTRLEQEIATYRRLLE LDVKTRLEQEIATYRRLLEGEDAHLTQYKK K T R Y R R 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 11 1 1378.7205 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;CON__P08730-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;A8MT21;CON__P35900;CON__Q9D312;P35900;P02533;CON__P02533;CON__Q61782;CON__Q04695;Q04695;F5GWP8;A0A3B3IS58;CON__Q6IFX2 CON__Q04695 375 385 KRT13;KRT16;KRT15;KRT20;KRT14;KRT17 Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2;3 2.4001E-74 214.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 9 14 14 11 6 0.15244 0.15882 114.26 62 Median 0.22808 0.24145 106.03 12 8 Median 0.08595 0.086795 167.65 7 4 Median 0.14077 0.15708 119.67 13 10 Median 0.067874 0.061464 123.97 13 10 Median 0.12881 0.13749 78.227 11 8 Median 0.32108 0.2842 88.92 6 2 Median 978270000 703930000 274340000 185470000 151230000 34239000 52033000 46177000 5856100 288400000 186100000 102300000 241430000 161680000 79751000 156750000 120330000 36425000 54182000 38413000 15769000 + 34116 768;739;754;787;736;753 35869 179073;179074;179075;179076;179077;179078;179079;179080;179081;179082;179083;179084;179085;179086;179087;179088;179089;179090;179091;179092;179093;179094;179095;179096;179097;179098;179099;179100;179101;179102;179103;179104;179105;179106;179107;179108;179109;179110;179111;179112;179113;179114;179115;179116;179117;179118;179119;179120;179121;179122;179123;179124;179125;179126;179127;179128;179129;179130;179131;179132;179133;179134;179135;179136;179137;179138 181094;181095;181096;181097;181098;181099;181100;181101;181102;181103;181104;181105;181106;181107;181108;181109;181110;181111;181112;181113;181114;181115;181116;181117;181118;181119;181120;181121;181122;181123;181124;181125;181126;181127;181128;181129;181130;181131;181132;181133;181134;181135;181136;181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149;181150;181151;181152;181153;181154;181155;181156;181157;181158 181095 65 TRLEQEIATYRR MEQQNQEYKILLDVKTRLEQEIATYRRLLE DVKTRLEQEIATYRRLLEGEDAHLTQYKKE K T R R R L 1 3 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 12 2 1534.8216 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P35900;CON__Q9D312;P35900;P02533;CON__P02533;CON__Q61782;CON__Q04695;Q04695;F5GWP8;A0A3B3IS58;CON__Q6IFX2 CON__Q04695 375 386 KRT16;KRT20;KRT14;KRT17 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 20;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 0.00033291 58.098 By matching By matching By MS/MS By MS/MS 3 1 2 1 0.53351 0.62637 66.855 7 Median 0.40362 0.39281 104.94 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53351 0.65381 NaN 1 0 Median 0.40722 0.52679 46.307 2 0 Median 0.59196 0.62637 NaN 1 0 Median 113930000 73252000 40681000 25208000 17065000 8142900 0 0 0 0 0 0 23297000 14371000 8925900 43590000 28400000 15190000 21838000 13416000 8422500 + 34117 768;739;754;787 35870 179139;179140;179141;179142;179143;179144;179145 181159;181160;181161 181159 3 TRLQQELDDLLVDLDHQR HEEKVAAYDKLEKTKTRLQQELDDLLVDLD QQELDDLLVDLDHQRQSACNLEKKQKKFDQ K T R Q R Q 0 2 0 4 0 3 1 0 1 0 5 0 0 0 0 0 1 0 0 1 0 0 18 1 2206.1342 P35579 P35579 1416 1433 MYH9 Myosin-9 yes yes 3 0.068468 8.8192 By MS/MS 1 1.0627 1.1365 NaN 1 Median 1.0627 1.1365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 838990 415960 423030 838990 415960 423030 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34118 2244 35871 179146 181162 181162 1 TRNEELAQTWK MPLQDSISLLLEAVRTRNEELAQTWKRSEQ EAVRTRNEELAQTWKRSEQWATIEQLCSTV R T R W K R 1 1 1 0 0 1 2 0 0 0 1 1 0 0 0 0 2 1 0 0 0 0 11 1 1374.6892 Q8TAT6;I3L283;I3L3I1;I3L281 Q8TAT6 534 544 NPLOC4 Nuclear protein localization protein 4 homolog yes no 2 0.0016887 71.349 By MS/MS By MS/MS 1 1 1.3046 1.288 14.827 2 Median NaN NaN NaN 0 0 Median 1.2648 1.1598 NaN 1 0 Median 1.3456 1.4303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4775000 1929900 2845100 0 0 0 2876700 1100500 1776200 1898400 829440 1068900 0 0 0 0 0 0 0 0 0 34119 3456 35872 179147;179148 181163;181164;181165 181164 3 TRPAANPIQFTLNK YGWKQGLKTGMYYLRTRPAANPIQFTLNKE RTRPAANPIQFTLNKEKLKDKEKVSKEEEE R T R N K E 2 1 2 0 0 1 0 0 0 1 1 1 0 1 2 0 2 0 0 0 0 0 14 1 1569.8627 P23921;E9PL69 P23921 741 754 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2;3 1.3304E-07 106.67 By MS/MS By MS/MS By matching 2 3 1 0.84345 0.85273 35.664 6 Median 0.80814 0.83075 0.97694 2 0 Median 0.92833 0.92149 47.66 3 0 Median 0.77919 0.83379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60228000 31765000 28463000 39497000 21821000 17676000 18314000 8836300 9478000 2417000 1108000 1309000 0 0 0 0 0 0 0 0 0 34120 2121 35873 179149;179150;179151;179152;179153;179154 181166;181167;181168;181169;181170;181171;181172;181173 181168 8 TRPDGNCFYR QKIKDLHKKYSYIRKTRPDGNCFYRAFGFS SYIRKTRPDGNCFYRAFGFSHLEALLDDSK K T R Y R A 0 2 1 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 10 1 1284.567 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5GYJ8 J3KR44 85 94 OTUB1 Ubiquitin thioesterase OTUB1 yes no 3 0.00068151 61.353 By MS/MS 1 1.06 0.97569 NaN 1 Median NaN NaN NaN 0 0 Median 1.06 0.97569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1953500 858780 1094700 0 0 0 1953500 858780 1094700 0 0 0 0 0 0 0 0 0 0 0 0 34121 1322 35874 179155 181174;181175 181175 2 TRPEGEPSSLSPEELAFAR MKIEKFFPHVLEKEKTRPEGEPSSLSPEEL GEPSSLSPEELAFAREFMANTESYLKNVAL K T R A R E 2 2 0 0 0 0 4 1 0 0 2 0 0 1 3 3 1 0 0 0 0 0 19 1 2072.0174 Q9BRT9;E5RFF9 Q9BRT9 113 131 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed;DNA replication complex GINS protein SLD5 yes no 3 0.018743 18.296 By MS/MS 1 0.78271 0.66473 NaN 1 Median NaN NaN NaN 0 0 Median 0.78271 0.66473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1787200 992560 794630 0 0 0 1787200 992560 794630 0 0 0 0 0 0 0 0 0 0 0 0 34122 833 35875 179156 181176;181177 181177 2 TRPEPTEVLHACK DSSDAQGGLEPRVEKTRPEPTEVLHACKTQ EKTRPEPTEVLHACKTQVAELELWLQQANV K T R C K T 1 1 0 0 1 0 2 0 1 0 1 1 0 0 2 0 2 0 0 1 0 0 13 1 1536.7719 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4230 4242 SYNE2 Nesprin-2 yes no 3 0.0023613 37.613 By MS/MS By matching 1 1 0.94673 0.98197 53.612 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58194 0.67214 NaN 1 0 Median 1.5402 1.4346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1925700 1079200 846470 0 0 0 0 0 0 1627000 946750 680210 298740 132490 166250 0 0 0 0 0 0 34123 3521 35876 179157;179158 181178 181178 1 TRPEVGEMLR KFLKAQVLPPLRDVRTRPEVGEMLRNKLVR LRDVRTRPEVGEMLRNKLVRLMTHLDTDVK R T R L R N 0 2 0 0 0 0 2 1 0 0 1 0 1 0 1 0 1 0 0 1 0 0 10 1 1186.6128 Q9NPQ8;H0YEN0 Q9NPQ8 365 374 RIC8A Synembryn-A yes no 3 0.00072444 70.942 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1298600 0 1298600 1298600 0 1298600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34124 4057 35877 179159 181179 181179 1 TRPKPIITSVPK RYLVTALIKDKILFKTRPKPIITSVPKKV_ LFKTRPKPIITSVPKKV_____________ K T R P K K 0 1 0 0 0 0 0 0 0 2 0 2 0 0 3 1 2 0 0 1 0 0 12 2 1335.8238 P0CG13;J3KSJ7 P0CG13 108 119 CHTF8 Chromosome transmission fidelity protein 8 homolog yes no 3 0.0011225 46.159 By matching By MS/MS By MS/MS 1 1 1 0.52651 0.57042 14.995 3 Median 0.52651 0.57042 NaN 1 0 Median 0.77889 0.70596 NaN 1 0 Median 0.46841 0.52863 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8231700 5253300 2978400 1400300 784010 616320 3977000 2387600 1589300 2854400 2081600 772760 0 0 0 0 0 0 0 0 0 34125 1927 35878 179160;179161;179162 181180;181181;181182 181182 3 TRPLLNIR ETSKYCPICDVQVHKTRPLLNIRSDKTLQD CDVQVHKTRPLLNIRSDKTLQDIVYKLVPG K T R I R S 0 2 1 0 0 0 0 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 1 981.60835 R4GMX3;Q5T8Z4;P35226;Q5T8Z6;Q5T8Z2 R4GMX3 206 213 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 yes no 2 0.019613 83.265 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.9484 0.9357 12.855 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86626 0.89597 6.1365 2 0 Median 1.0413 0.9166 NaN 1 0 Median 0.9484 1.0123 NaN 1 0 Median 1.3635 1.1992 NaN 1 0 Median 15757000 7964000 7793200 0 0 0 0 0 0 9009600 4869900 4139700 2274800 1095100 1179700 3480500 1601100 1879400 992300 397880 594420 34126 4503 35879 179163;179164;179165;179166;179167 181183;181184 181183 2 TRPLLSIR ______________________________ CDVQVHKTRPLLSIRSDKTLQDIVYKLVPG K T R I R S 0 2 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 1 954.59745 A0A087X259;J3KT13;P35227 A0A087X259 9 16 PCGF2 Polycomb group RING finger protein 2 yes no 2 0.016211 96.948 By MS/MS By matching 2 1 0.84909 0.81001 7.813 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76492 0.80579 11.041 2 0 Median 0.86839 0.81001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10822000 6288400 4534000 0 0 0 0 0 0 5857200 3569100 2288100 4965200 2719300 2245900 0 0 0 0 0 0 34127 130 35880 179168;179169;179170 181185;181186 181186 2 TRPVVAAGAVGLAQR GDGAGFKVAMGAFDKTRPVVAAGAVGLAQR TRPVVAAGAVGLAQRALDEATKYALERKTF K T R Q R A 4 2 0 0 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 3 0 0 15 1 1464.8525 B7Z9I1;Q5T4U5;P11310;H0YDT5 B7Z9I1 244 258 ACADM Medium-chain specific acyl-CoA dehydrogenase, mitochondrial yes no 2;3 7.5322E-08 155.66 By MS/MS By MS/MS By MS/MS 2 2 1 0.89799 0.93886 22.398 5 Median 0.84682 0.891 7.4003 2 0 Median 1.3629 1.2728 22.577 2 0 Median 0.89799 0.92037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52287000 27415000 24872000 34457000 18984000 15473000 11016000 5331200 5684400 6814500 3099900 3714700 0 0 0 0 0 0 0 0 0 34128 639 35881 179171;179172;179173;179174;179175 181187;181188;181189;181190;181191;181192;181193;181194 181188 8 TRQDGSQEAPEAPLSSELEPFHPKPK LLSPLLPSIKPTVRKTRQDGSQEAPEAPLS APLSSELEPFHPKPKIRTRKSSRMTPFPAT K T R P K I 2 1 0 1 0 2 4 1 1 0 2 2 0 1 5 3 1 0 0 0 0 0 26 2 2874.4148 Q14676;H0Y6Z8 Q14676 1081 1106 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 4 2.0177E-15 76.471 By MS/MS 1 0.32216 0.42563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.32216 0.42563 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13534000 11042000 2492300 0 0 0 0 0 0 13534000 11042000 2492300 0 0 0 0 0 0 0 0 0 34129 2887 35882 179176 181195 181195 1 TRQEPTSESSMEDSPTTER EAIVKNVPEWNPVPRTRQEPTSESSMEDSP PTSESSMEDSPTTERLNFDRFDICRLLQHG R T R E R L 0 2 0 1 0 1 4 0 0 0 0 0 1 0 2 4 4 0 0 0 0 0 19 1 2166.9335 A0A0A0MTH9;O14981 A0A0A0MTH9 82 100 BTAF1 TATA-binding protein-associated factor 172 yes no 3 0.018743 18.296 By MS/MS 1 0.52105 0.6582 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52105 0.6582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1696200 740160 956010 0 0 0 0 0 0 1696200 740160 956010 0 0 0 0 0 0 0 0 0 34130 191 35883 179177 181196 181196 1 TRQEQGAENEELHQLWR KKHLEVARTWHKLIKTRQEQGAENEELHQL QEQGAENEELHQLWRKLTQFLAESTEDQNN K T R W R K 1 2 1 0 0 3 4 1 1 0 2 0 0 0 0 0 1 1 0 0 0 0 17 1 2123.0144 Q6PGP7;D6RCE2;H0Y964 Q6PGP7 145 161 TTC37 Tetratricopeptide repeat protein 37 yes no 3 7.072E-12 93.152 By MS/MS 1 0.82999 0.8876 NaN 1 Median 0.82999 0.8876 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8570100 4544800 4025300 8570100 4544800 4025300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34131 3169 35884 179178 181197 181197 1 TRRDEPTGEVLSLVGK NSNLVLQADRSLIDRTRRDEPTGEVLSLVG RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R T R G K L 0 2 0 1 0 0 2 2 0 0 2 1 0 0 1 1 2 0 0 2 0 0 16 2 1755.9479 O75643;A0A494C1A5 O75643 31 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 3 0.052641 12.518 By matching By MS/MS 1 1 0.58225 0.64451 1.1229 2 Median 0.59367 0.63942 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57105 0.64965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5823200 3251900 2571200 2449900 1434400 1015500 0 0 0 3373300 1817600 1555700 0 0 0 0 0 0 0 0 0 34132 1688 35885 179179;179180 181198 181198 1 TRTEELIVQTK GRNVLRWDLSPEQIKTRTEELIVQTKQVYD EQIKTRTEELIVQTKQVYDAVGMLGIEEVT K T R T K Q 0 1 0 0 0 1 2 0 0 1 1 1 0 0 0 0 3 0 0 1 0 0 11 1 1316.73 Q9BYT8 Q9BYT8 59 69 NLN Neurolysin, mitochondrial yes yes 3 0.036067 21.301 By MS/MS 1 1.2007 1.2202 NaN 1 Median 1.2007 1.2202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 872600 415120 457480 872600 415120 457480 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34133 3895 35886 179181 181199 181199 1 TRTPASINATPANINLADLTR YQDPVPGITPSSSSRTRTPASINATPANIN INATPANINLADLTRAVNALPQNMTSQMFS R T R T R A 4 2 3 1 0 0 0 0 0 2 2 0 0 0 2 1 4 0 0 0 0 0 21 1 2209.1815 Q7KZ85 Q7KZ85 1530 1550 SUPT6H Transcription elongation factor SPT6 yes yes 3 9.2115E-18 103.26 By MS/MS By MS/MS 1 1 0.63281 0.68063 10.598 2 Median 0.68598 0.7336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58375 0.63149 NaN 1 0 Median NaN NaN NaN 0 0 Median 10834000 6163100 4671400 5466400 3093600 2372800 0 0 0 0 0 0 0 0 0 5368000 3069400 2298600 0 0 0 34134 3213 35887 179182;179183 181200;181201 181200 2 TSAALQTHFNEVHAK SGFICWKKGCNQVFKTSAALQTHFNEVHAK TSAALQTHFNEVHAKRPQLPVSDRHVYKYR K T S A K R 3 0 1 0 0 1 1 0 2 0 1 1 0 1 0 1 2 0 0 1 0 0 15 0 1652.8271 Q15911 Q15911 1373 1387 ZFHX3 Zinc finger homeobox protein 3 yes yes 3 0.04511 13.101 By MS/MS By matching 1 1 1.2993 1.3097 2.1667 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2121 1.3299 NaN 1 0 Median 1.3928 1.2898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2318600 832970 1485600 0 0 0 0 0 0 1782600 638520 1144000 536050 194440 341600 0 0 0 0 0 0 34135 2977 35888 179184;179185 181202 181202 1 TSAALSTVGSAISR LYKKTQETLSQAGQKTSAALSTVGSAISRK KTSAALSTVGSAISRKLGDMRNSATFKSFE K T S S R K 3 1 0 0 0 0 0 1 0 1 1 0 0 0 0 4 2 0 0 1 0 0 14 0 1319.7045 O43399;A0A087WYR3 O43399 140 153 TPD52L2 Tumor protein D54 yes no 2;3 1.0068E-42 218.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 2 1 1.1655 1.0498 19.374 14 Median 1.1621 1.1068 22.812 5 0 Median 0.94614 0.80367 15.988 5 1 Median 1.2216 1.1734 NaN 1 0 Median 1.3457 1.0889 1.5853 2 1 Median 0.96408 0.95561 NaN 1 0 Median NaN NaN NaN 0 0 Median 253570000 116990000 136580000 187960000 87479000 100480000 39234000 17265000 21969000 18188000 8532700 9655300 4308600 1853000 2455600 3876400 1862900 2013500 0 0 0 34136 1571 35889 179186;179187;179188;179189;179190;179191;179192;179193;179194;179195;179196;179197;179198;179199 181203;181204;181205;181206;181207;181208;181209;181210;181211;181212;181213;181214;181215;181216;181217;181218;181219;181220;181221 181204 18 TSAAPNLDTLPANK T S N K 3 0 2 1 0 0 0 0 0 0 2 1 0 0 2 1 2 0 0 0 0 0 14 0 1411.7307 REV__Q5VT06 yes yes 3 0.052221 12.833 By MS/MS 1 0.73003 0.69732 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73003 0.69732 NaN 1 0 Median NaN NaN NaN 0 0 Median 18081000 11980000 6101700 0 0 0 0 0 0 0 0 0 0 0 0 18081000 11980000 6101700 0 0 0 + 34137 4546 35890 179200 181222 181222 1 TSALENYINR ______________________________ ______________________________ M T S N R T 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.5884 O95777;F2Z2Y6;C9JNV3 O95777 2 11 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes no 2 0.00035599 100.15 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 2 1.0427 1.0314 13.851 8 Median 1.0866 1.0512 NaN 1 0 Median 1.4866 1.2321 10.954 2 0 Median 0.90311 0.90786 11.119 2 0 Median 1.2906 1.0119 NaN 1 0 Median 0.9498 0.98553 9.6309 2 0 Median NaN NaN NaN 0 0 Median 135230000 64560000 70672000 53504000 25164000 28340000 8817400 3648500 5168900 27054000 13447000 13607000 12206000 5205100 7001200 33650000 17096000 16554000 0 0 0 34138 1792 35891 179201;179202;179203;179204;179205;179206;179207;179208 181223;181224;181225;181226;181227;181228;181229;181230;181231;181232;181233 181229 11 TSALQEEADSIQR EVEHKIKFCRQFHEKTSALQEEADSIQRNE EKTSALQEEADSIQRNELLLNQEVNKGVKE K T S Q R N 2 1 0 1 0 2 2 0 0 1 1 0 0 0 0 2 1 0 0 0 0 0 13 0 1446.6951 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2952 2964 SYNE2 Nesprin-2 yes no 2 7.118E-11 180.36 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0443 0.97809 17.789 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80494 0.84882 NaN 1 0 Median 1.4881 1.2955 NaN 1 0 Median 0.91574 0.95975 NaN 1 1 Median 1.1909 0.99679 NaN 1 0 Median 16536000 8795600 7740900 0 0 0 0 0 0 11906000 6665300 5240500 1778200 711440 1066700 2170900 1123400 1047500 681490 295380 386100 34139 3521 35892 179209;179210;179211;179212 181234;181235;181236;181237;181238 181234 5 TSALSDETKNNWEVSALSR PYYKDILPCLDGYLKTSALSDETKNNWEVS SDETKNNWEVSALSRAAQKGFNKVVLKHLK K T S S R A 2 1 2 1 0 0 2 0 0 0 2 1 0 0 0 4 2 1 0 1 0 0 19 1 2107.0182 P78527 P78527 802 820 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.6269E-25 175.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 1 1 0.91704 0.98509 18.997 9 Median 0.93659 0.93979 4.0843 3 0 Median 1.5975 1.4853 NaN 1 0 Median 0.85012 0.98509 19.449 3 0 Median 1.2368 1.1521 NaN 1 0 Median 0.80918 0.91915 NaN 1 0 Median NaN NaN NaN 0 0 Median 328450000 167630000 160820000 137190000 68815000 68379000 6810500 3537800 3272600 171340000 88812000 82526000 429010 206040 222970 12679000 6262200 6417000 0 0 0 34140 2647 35893 179213;179214;179215;179216;179217;179218;179219;179220;179221 181239;181240;181241;181242;181243;181244;181245;181246;181247;181248;181249;181250;181251;181252;181253;181254;181255;181256;181257 181240 19 TSALTQGLER ______________________________ ______________________________ M T S E R I 1 1 0 0 0 1 1 1 0 0 2 0 0 0 0 1 2 0 0 0 0 0 10 0 1074.5669 A0A087WV46;C9JXA7;Q0VGL1 A0A087WV46 2 11 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes no 2 8.7791E-12 145.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.3232 1.2515 63.704 6 Median 1.1071 1.0706 NaN 1 1 Median 1.7188 1.4626 NaN 1 0 Median 1.2597 1.2783 NaN 1 0 Median 0.67221 0.58187 105.31 2 1 Median 1.39 1.4226 NaN 1 0 Median NaN NaN NaN 0 0 Median 87766000 38367000 49399000 59555000 27251000 32304000 14633000 5133400 9499400 5161300 2529500 2631800 3477300 1439500 2037800 4939700 2013900 2925800 0 0 0 34141 39 35894 179222;179223;179224;179225;179226;179227 181258;181259;181260;181261;181262;181263 181258 6 TSAPITCELLNK IQEALREHSNPNYDKTSAPITCELLNKQVK YDKTSAPITCELLNKQVKVSPDMAIFITMN K T S N K Q 1 0 1 0 1 0 1 0 0 1 2 1 0 0 1 1 2 0 0 0 0 0 12 0 1345.6912 Q14204;A0A2R8YFZ7 Q14204 1993 2004 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00061558 67.704 By MS/MS By MS/MS 1 1 0.95493 0.96712 10.508 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84134 0.89787 NaN 1 0 Median 1.0839 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22453000 11317000 11135000 0 0 0 0 0 0 20464000 10137000 10327000 1988600 1180000 808610 0 0 0 0 0 0 34142 2865 35895 179228;179229 181264;181265;181266;181267 181265 4 TSAQVAVFHLQEIAEDELAR DPLGVERTPSGRVRRTSAQVAVFHLQEIAE AVFHLQEIAEDELARDWTKRRMKDDLVPET R T S A R D 4 1 0 1 0 2 3 0 1 1 2 0 0 1 0 1 1 0 0 2 0 0 20 0 2226.1281 Q96KM6 Q96KM6 685 704 ZNF512B Zinc finger protein 512B yes yes 3 0.0057879 23.726 By MS/MS 1 0.83025 0.88815 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83025 0.88815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1830300 845660 984600 0 0 0 0 0 0 1830300 845660 984600 0 0 0 0 0 0 0 0 0 34143 3694 35896 179230 181268;181269 181268 2 TSAQVVLDGLVDK LHIVALIAQKGNFSKTSAQVVLDGLVDKIG SKTSAQVVLDGLVDKIGDVKCGNNAKEAMT K T S D K I 1 0 0 2 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1343.7296 Q14008 Q14008 677 689 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 5.512E-07 106.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 4 1 2 1.1425 1.0616 22.943 11 Median 1.2373 1.1887 NaN 1 0 Median 1.1265 1.0006 NaN 1 0 Median 1.1062 1.2079 5.8364 2 0 Median 1.1651 1.0384 16.28 4 0 Median 1.6919 1.7901 NaN 1 0 Median 1.0331 0.87879 12.303 2 0 Median 43693000 19722000 23971000 4897800 1968800 2929000 3125900 1397100 1728800 24408000 11265000 13143000 8798900 3979000 4819900 1768400 800720 967700 694000 311440 382560 34144 2850 35897 179231;179232;179233;179234;179235;179236;179237;179238;179239;179240;179241 181270;181271;181272;181273;181274;181275;181276;181277;181278;181279;181280;181281 181272 12 TSASIILR ICDDELILIKNTKARTSASIILRGANDFMC IKNTKARTSASIILRGANDFMCDEMERSLH R T S L R G 1 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 0 8 0 859.51272 P17987;E7ERF2;E7EQR6;F5H282;F5GZ03 P17987 371 378 TCP1 T-complex protein 1 subunit alpha yes no 2 1.6003E-05 158.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.135 0.94807 41.718 7 Median 1.0298 0.99657 26.046 2 1 Median 1.2853 1.0936 3.2527 2 1 Median 0.50909 0.52239 NaN 1 0 Median 1.135 0.94807 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.46662 0.40162 NaN 1 0 Median 184900000 80388000 104520000 55622000 24031000 31591000 120250000 50403000 69850000 5694700 3711400 1983300 1326100 574370 751690 0 0 0 2009100 1668400 340740 34145 2051 35898 179242;179243;179244;179245;179246;179247;179248 181282;181283;181284;181285;181286;181287;181288;181289;181290 181287 9 TSASLEMNQGVSEER HQLESSLSPVEVFAKTSASLEMNQGVSEER TSASLEMNQGVSEERIHLGSSPKKGGNCDL K T S E R I 1 1 1 0 0 1 3 1 0 0 1 0 1 0 0 3 1 0 0 1 0 0 15 0 1636.7363 Q9H410;Q5JW53 Q9H410 38 52 DSN1 Kinetochore-associated protein DSN1 homolog yes no 2 1.4027E-13 121.08 By MS/MS 1 1.1907 1.2954 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1907 1.2954 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8812800 3533700 5279100 0 0 0 0 0 0 8812800 3533700 5279100 0 0 0 0 0 0 0 0 0 34146 3960 35899 179249 181291 181291 1 TSATWLALSR EADTTENQSGVSFDKTSATWLALSRIAGLC VSFDKTSATWLALSRIAGLCNRAVFQANQE K T S S R I 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 2 2 1 0 0 0 0 10 0 1104.5928 P05023 P05023 414 423 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.00013096 131.5 By MS/MS By MS/MS By matching By matching By matching 4 3 1 1 2 1.2585 1.1099 13.594 11 Median 1.1662 1.0944 16.398 4 4 Median 1.3009 1.1099 11.496 3 0 Median NaN NaN NaN 0 0 Median 1.2585 1.0261 NaN 1 0 Median 1.3458 1.3591 NaN 1 0 Median 1.4459 1.1483 12.643 2 0 Median 166430000 74035000 92396000 79535000 35540000 43995000 52053000 22638000 29415000 0 0 0 243520 104780 138740 26146000 11708000 14438000 8453800 4044100 4409800 34147 1857 35900 179250;179251;179252;179253;179254;179255;179256;179257;179258;179259;179260 181292;181293;181294;181295;181296;181297;181298;181299 181296 8 TSDANINWNNLK KNTPEKGYLAVAVVKTSDANINWNNLKDKK VVKTSDANINWNNLKDKKSCHTAVDRTAGW K T S L K D 1 0 4 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 12 0 1388.6684 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 457 468 yes no 2 8.3397E-41 189.38 By MS/MS 1 0.024369 0.021652 NaN 1 Median 0.024369 0.021652 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25883000 25181000 702040 25883000 25181000 702040 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 34148 769 35901 179261 181300 181300 1 TSDELRDTMSLMIR AENSCTERDGWCLPKTSDELRDTMSLMIRQ KTSDELRDTMSLMIRQTIRSKRPALFSSSA K T S I R Q 0 2 0 2 0 0 1 0 0 1 2 0 2 0 0 2 2 0 0 0 0 0 14 1 1666.8018 Q9Y5Q8;Q5T7U1;H7BY84 Q9Y5Q8 443 456 GTF3C5 General transcription factor 3C polypeptide 5 yes no 3 0.035956 18.457 By matching By MS/MS 1 1 1.1177 1.153 14.442 2 Median 1.2961 1.2769 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96386 1.041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3173500 1693200 1480400 508090 162520 345570 0 0 0 2665400 1530600 1134800 0 0 0 0 0 0 0 0 0 34149 4466 35902 179262;179263 181301 181301 1 TSDIFGSPVTATSR TPVQTRQHLNPPGGKTSDIFGSPVTATSRL KTSDIFGSPVTATSRLAHPNKPKDHVFLCE K T S S R L 1 1 0 1 0 0 0 1 0 1 0 0 0 1 1 3 3 0 0 1 0 0 14 0 1437.71 H3BMT0;H3BTV5;H3BU16;A6NGP5;H3BMV3;Q9H910 H3BMT0 75 88 HN1L Hematological and neurological expressed 1-like protein yes no 2 8.0775E-15 136.96 By MS/MS By MS/MS 3 1 0.81482 0.79861 38.855 4 Median 0.77884 0.7648 41.075 3 3 Median NaN NaN NaN 0 0 Median 0.9723 0.93396 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79313000 51762000 27550000 61310000 42692000 18618000 0 0 0 18003000 9070900 8932100 0 0 0 0 0 0 0 0 0 34150 514 35903 179264;179265;179266;179267 181302;181303;181304;181305 181305 4 TSDLIVLGLPWK TDASSAVKVKRAVQKTSDLIVLGLPWKTTE VQKTSDLIVLGLPWKTTEQDLKEYFSTFGE K T S W K T 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 1 1 1 0 1 0 0 12 0 1340.7704 Q13148;A0A087WYY0;A0A087X260;G3V162;B1AKP7;A0A087WX29;K7EN94;A0A0A0N0M3;K7EJM5;A0A087WV68;A0A087WXQ5 Q13148 103 114 TARDBP;TDP43 TAR DNA-binding protein 43 yes no 2 4.8959E-06 101.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 3 3 3 1.0982 0.97805 20.049 21 Median 1.0886 1.0659 19.951 3 0 Median 1.1454 0.97824 13.476 4 0 Median 0.94163 0.97274 14.132 5 0 Median 1.1626 1.0333 7.6299 3 0 Plateau 0.9531 0.95056 2.2967 3 0 Median 1.187 0.94677 40.045 3 0 Plateau 102010000 51041000 50965000 2939700 1366800 1572900 13872000 6294300 7577400 56733000 29921000 26812000 3941000 1780600 2160300 10863000 5336200 5527000 13657000 6342400 7314500 34151 2789 35904 179268;179269;179270;179271;179272;179273;179274;179275;179276;179277;179278;179279;179280;179281;179282;179283;179284;179285;179286;179287;179288 181306;181307;181308;181309;181310;181311;181312;181313;181314;181315;181316;181317;181318;181319;181320;181321;181322;181323;181324;181325;181326 181326 21 TSDPDVILCNSVELIR HEEGEPEAASAGSCKTSDPDVILCNSVELI SDPDVILCNSVELIRERLTVSEDGPGVRRQ K T S I R E 0 1 1 2 1 0 1 0 0 2 2 0 0 0 1 2 1 0 0 2 0 0 16 0 1829.9193 A0A087X0P9;Q96CW6 A0A087X0P9 124 139 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS yes no 2 0.00037963 47.559 By MS/MS By matching 1 1 1.2806 1.1771 61.84 2 Median 0.78933 0.76016 NaN 1 0 Median 2.0778 1.8227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14831000 7949900 6881100 14448000 7838700 6608900 383340 111150 272190 0 0 0 0 0 0 0 0 0 0 0 0 34152 109 35905 179289;179290 181327;181328 181327 2 TSDQTWVKLER ISFIRQMVEHGGFYRTSDQTWVKLERIQFV GFYRTSDQTWVKLERIQFVGACNPPTDPGR R T S E R I 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 1 2 1 0 1 0 0 11 1 1361.6939 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2;A0A2R8YGC7 Q14204 2695 2705 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 5.6897E-19 164.97 By MS/MS By MS/MS 2 2 1.0282 1.1314 15.336 4 Median 1.1843 1.2343 18.815 2 2 Median NaN NaN NaN 0 0 Median 0.93069 1.0797 13.13 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59503000 29704000 29799000 30810000 14840000 15971000 0 0 0 28692000 14864000 13828000 0 0 0 0 0 0 0 0 0 34153 2865 35906 179291;179292;179293;179294 181329;181330;181331;181332 181330 4 TSDSKEGGEGFTVDTPAK LPNQSLTVRESEVLKTSDSKEGGEGFTVDT SKEGGEGFTVDTPAKASITSKRHIPEAHQA K T S A K A 1 0 0 2 0 0 2 3 0 0 0 2 0 1 1 2 3 0 0 1 0 0 18 1 1824.8378 Q8NFC6 Q8NFC6 1340 1357 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 0.02811 15.09 By MS/MS 1 0.56999 0.64779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56999 0.64779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3238600 1982500 1256200 0 0 0 0 0 0 3238600 1982500 1256200 0 0 0 0 0 0 0 0 0 34154 3434 35907 179295 181333;181334 181333 2 TSDVGGYYYEK DEEDYDYESYEKTTRTSDVGGYYYEKIERT KTTRTSDVGGYYYEKIERTTKSPSDSGYSY R T S E K I 0 0 0 1 0 0 1 2 0 0 0 1 0 0 0 1 1 0 3 1 0 0 11 0 1280.5561 P46821 P46821 1898 1908 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00013748 85.533 By MS/MS By MS/MS 1 1 1.2695 1.2963 21.121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4002 1.5051 NaN 1 0 Median 1.151 1.1165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8751100 3199700 5551400 0 0 0 0 0 0 5631000 1863900 3767100 3120100 1335800 1784300 0 0 0 0 0 0 34155 2347 35908 179296;179297 181335;181336;181337 181336 3 TSEEFVHINR DGTVVSDVELPPWAKTSEEFVHINRLALES PPWAKTSEEFVHINRLALESEFVSCQLHQW K T S N R L 0 1 1 0 0 0 2 0 1 1 0 0 0 1 0 1 1 0 0 1 0 0 10 0 1230.5993 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A3B3IU76;A0A3B3IS13;A0A3B3ISK3 E9PEM5 2388 2397 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2;3 0.00043215 104.06 By MS/MS By MS/MS By matching 3 2 1 1.1994 1.1042 38.815 6 Median 0.96669 0.96881 28.054 3 0 Plateau 1.4848 1.2262 0.28442 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1535 1.8099 NaN 1 0 Median 25299000 11118000 14181000 8386400 4325000 4061400 15895000 6553700 9341500 0 0 0 0 0 0 0 0 0 1017700 239220 778440 34156 470 35909 179298;179299;179300;179301;179302;179303 181338;181339;181340;181341;181342 181338 4 TSEEISLNDAGVELK PAVEKEQASTEHQSRTSEEISLNDAGVELK TSEEISLNDAGVELKSTKQDGDKSLSAVPD R T S L K S 1 0 1 1 0 0 3 1 0 1 2 1 0 0 0 2 1 0 0 1 0 0 15 0 1603.7941 Q14789;E7EU81;H0Y867 Q14789 648 662 GOLGB1 Golgin subfamily B member 1 yes no 2 2.4702E-10 166.14 By MS/MS By MS/MS 1 1 1.0284 0.96158 9.5309 2 Median 1.0256 1.0286 NaN 1 0 Median 1.0312 0.89891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19274000 9450500 9823400 15450000 7577200 7873200 3823500 1873300 1950300 0 0 0 0 0 0 0 0 0 0 0 0 34157 2900 35910 179304;179305 181343;181344;181345 181344 3 TSEFTAAFVGR LWYVMQVVSQLLDPRTSEFTAAFVGRLVST LDPRTSEFTAAFVGRLVSTLISKAGRELGE R T S G R L 2 1 0 0 0 0 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 11 0 1184.5826 Q96P70 Q96P70 755 765 IPO9 Importin-9 yes yes 2 2.3759E-05 124.23 By MS/MS 2 0.84185 0.81113 17.895 2 Median 0.84185 0.81113 17.895 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22361000 11408000 10953000 22361000 11408000 10953000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34158 3711 35911 179306;179307 181346;181347 181346 2 TSEIVLRPR ______________________________ RPETQKTSEIVLRPRNKRSRSPLELEPEAK K T S P R N 0 2 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 9 1 1069.6244 Q92466;A0A087X0X5;A0A087WW71;A0A087WTQ7;A0A087WV56 Q92466 12 20 DDB2 DNA damage-binding protein 2 yes no 2 3.5115E-06 160.88 By matching By MS/MS By MS/MS 1 5 1 0.78229 0.85974 31.852 7 Median 0.94131 0.95684 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71497 0.73279 32.641 5 0 Median 1.4506 1.3531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24734000 13145000 11589000 1032200 389970 642230 0 0 0 16810000 9918800 6891100 6891900 2836400 4055500 0 0 0 0 0 0 34159 3527 35912 179308;179309;179310;179311;179312;179313;179314 181348;181349;181350;181351;181352 181352 5 TSEVDLAKPLVK ______________________________ LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQ K T S V K F 1 0 0 1 0 0 1 0 0 0 2 2 0 0 1 1 1 0 0 2 0 0 12 1 1298.7446 Q8WUM4;A0A3B3IT07;C9IZF9;F8WEQ7;F8WBR8 Q8WUM4 12 23 PDCD6IP Programmed cell death 6-interacting protein yes no 2;3 0.0054047 56.563 By MS/MS By MS/MS By matching By matching 3 2 2 2 0.92095 1.0076 41.356 9 Median 1.0725 1.1299 68.297 3 0 Plateau 0.78394 0.75742 0.69865 2 0 Median 1.0145 1.1607 13.702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1614 1.0528 6.2063 2 0 Median 14633000 7504800 7128000 7621400 4092100 3529300 2238800 1198800 1040000 3629200 1762500 1866700 0 0 0 0 0 0 1143400 451430 691940 34160 3493 35913 179315;179316;179317;179318;179319;179320;179321;179322;179323 181353;181354;181355 181353 3 TSEVIEDEKQFYSK ______________________________ MTSEVIEDEKQFYSKAKTYWKQIPPTVDGM M T S S K A 0 0 0 1 0 1 3 0 0 1 0 2 0 1 0 2 1 0 1 1 0 0 14 1 1701.8097 Q9BV86;S4R3J7;S4R344 Q9BV86 2 15 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2 1.49E-08 153.95 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2048 1.1059 13.381 4 Median 1.3847 1.4061 NaN 1 0 Median 1.2447 1.1405 NaN 1 0 Median 1.0773 1.0723 NaN 1 0 Median 1.1662 1.0484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38136000 16788000 21348000 21918000 9582000 12336000 1434100 626370 807700 14204000 6332800 7871000 580240 246400 333840 0 0 0 0 0 0 34161 3848 35914 179324;179325;179326;179327 181356;181357;181358;181359 181356 4 TSEVNCYR YRCGETGHVAINCSKTSEVNCYRCGESGHL VAINCSKTSEVNCYRCGESGHLARECTIEA K T S Y R C 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 8 0 1027.4393 P62633 P62633 153 160 CNBP Cellular nucleic acid-binding protein yes yes 2 0.019561 47.067 By MS/MS 1 1.0759 0.90118 NaN 1 Median NaN NaN NaN 0 0 Median 1.0759 0.90118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 510960 246940 264020 0 0 0 510960 246940 264020 0 0 0 0 0 0 0 0 0 0 0 0 34162 2591 35915 179328 181360 181360 1 TSEVPYAGINIGPVHK ASTLGSLEALLEFLKTSEVPYAGINIGPVH SEVPYAGINIGPVHKKDVMKASVMLEHDPQ K T S H K K 1 0 1 0 0 0 1 2 1 2 0 1 0 0 2 1 1 0 1 2 0 0 16 0 1680.8835 A0A087WUT6;O60841 A0A087WUT6 1000 1015 EIF5B Eukaryotic translation initiation factor 5B yes no 2;3 3.7973E-05 62.287 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 1 4 1 0.86984 0.77717 32.479 9 Median 0.35832 0.34387 NaN 1 1 Median 0.88873 0.76615 0.96935 2 0 Median 1.1022 1.1771 NaN 1 0 Median 0.86423 0.78024 9.2195 4 0 Median 0.7636 0.80106 NaN 1 0 Median NaN NaN NaN 0 0 Median 57898000 35925000 21973000 29164000 21652000 7512000 4383600 2259000 2124600 12500000 5642900 6857200 10614000 5654100 4960000 1236400 717320 519120 0 0 0 34163 35 35916 179329;179330;179331;179332;179333;179334;179335;179336;179337 181361;181362;181363;181364;181365;181366 181364 6 TSEVPYAGINIGPVHKK ASTLGSLEALLEFLKTSEVPYAGINIGPVH EVPYAGINIGPVHKKDVMKASVMLEHDPQY K T S K K D 1 0 1 0 0 0 1 2 1 2 0 2 0 0 2 1 1 0 1 2 0 0 17 1 1808.9785 A0A087WUT6;O60841 A0A087WUT6 1000 1016 EIF5B Eukaryotic translation initiation factor 5B yes no 3;4 3.991E-06 78.191 By MS/MS By MS/MS 2 1 0.77367 0.74513 13.049 3 Median 0.82311 0.80696 11.273 2 0 Median NaN NaN NaN 0 0 Median 0.58044 0.67475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34226000 19223000 15003000 15714000 8613800 7100300 0 0 0 18512000 10609000 7902900 0 0 0 0 0 0 0 0 0 34164 35 35917 179338;179339;179340 181367;181368;181369;181370 181367 4 TSFEIAELK LEVKTREKLEAAKKKTSFEIAELKERLKAS EAAKKKTSFEIAELKERLKASRETINCLKN K T S L K E 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1036.5441 O95619;F8W0J4 O95619 190 198 YEATS4 YEATS domain-containing protein 4 yes no 2 0.033408 47.574 By MS/MS 1 0.72706 0.68999 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72706 0.68999 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3955000 1970500 1984600 0 0 0 0 0 0 3955000 1970500 1984600 0 0 0 0 0 0 0 0 0 34165 1783 35918 179341 181371 181371 1 TSFFHVK HARQQVRSPVTNIARTSFFHVKRSNIWLAA SPVTNIARTSFFHVKRSNIWLAAVTKQNVN R T S V K R 0 0 0 0 0 0 0 0 1 0 0 1 0 2 0 1 1 0 0 1 0 0 7 0 864.44939 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8;C9JJD3;C9JPV8 A0A087WY71 53 59 AP2M1 AP-2 complex subunit mu yes no 2 0.050156 40.103 By matching By MS/MS By matching 1 1 1 1.1411 0.98442 15.095 3 Median NaN NaN NaN 0 0 Median 1.1411 0.98442 NaN 1 0 Median 1.1689 1.1479 NaN 1 0 Median 0.94786 0.84883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12173000 5830300 6342800 0 0 0 1630100 704080 926020 5837000 2706100 3130900 4706000 2420100 2285900 0 0 0 0 0 0 34166 78 35919 179342;179343;179344 181372 181372 1 TSFFLGEVGNAAK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM GKTSFFLGEVGNAAKMMLIVNMVQGSFMAT K T S A K M 2 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1339.6772 Q49A26;K7EMM8 Q49A26 423 435 GLYR1 Putative oxidoreductase GLYR1 yes no 2 3.4333E-05 147.41 By matching By MS/MS By matching By MS/MS By matching 1 1 2 4 2 1.0592 1.0431 26.745 10 Median NaN NaN NaN 0 0 Median 1.5619 1.3834 NaN 1 0 Median 0.91421 0.88618 NaN 1 0 Median 1.0705 0.92363 65.079 2 0 Median 0.94906 0.95228 15.703 4 1 Median 1.2206 1.1055 1.5287 2 0 Median 39433000 20514000 18919000 0 0 0 198750 51777 146980 18162000 9375900 8785700 343470 175910 167560 19862000 10524000 9338300 867610 387030 480580 34167 3018 35920 179345;179346;179347;179348;179349;179350;179351;179352;179353;179354 181373;181374;181375;181376;181377;181378 181374 6 TSFFLVR LIRLDVDTKLNEQLKTSFFLVREDTKAAVL TKLNEQLKTSFFLVREDTKAAVLLHLLHNV K T S V R E 0 1 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 7 0 868.48069 Q8TDD1 Q8TDD1 313 319 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.028868 50.539 By matching By MS/MS By MS/MS 1 1 1 1.4171 1.4638 10.485 3 Median NaN NaN NaN 0 0 Median 1.6624 1.4638 NaN 1 0 Median 1.4171 1.5149 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1708 1.2449 NaN 1 0 Median NaN NaN NaN 0 0 Median 4154800 1853500 2301300 0 0 0 236940 108220 128720 1922300 919110 1003200 0 0 0 1995500 826220 1169300 0 0 0 34168 3470 35921 179355;179356;179357 181379;181380;181381 181380 3 TSFFQALGITTK EVTVPAQNTGLGPEKTSFFQALGITTKISR PEKTSFFQALGITTKISRGTIEILSDVQLI K T S T K I 1 0 0 0 0 1 0 1 0 1 1 1 0 2 0 1 3 0 0 0 0 0 12 0 1312.7027 P05388;F8VU65;F8VWS0;F8VPE8;G3V210;F8VW21;Q8NHW5 P05388 135 146 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 4.5969E-06 137.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 2 1.2935 1.1515 16.475 9 Median 1.1321 1.0552 0.60036 2 0 Median 1.2365 1.0313 NaN 1 0 Median 1.2885 1.2395 NaN 1 0 Median 1.3695 1.1515 NaN 1 0 Median 1.5381 1.5076 21.407 2 0 Median 1.4038 1.1338 5.0696 2 0 Median 371390000 165500000 205900000 175500000 80582000 94918000 131780000 57512000 74269000 9287400 4156100 5131200 4957900 2021200 2936700 18693000 8040500 10653000 31173000 13184000 17989000 34169 1865 35922 179358;179359;179360;179361;179362;179363;179364;179365;179366 181382;181383;181384;181385;181386;181387;181388;181389;181390;181391;181392;181393;181394;181395;181396 181384 15 TSFHALTSILK RMQLSGEGAKTREYKTSFHALTSILKAEGL REYKTSFHALTSILKAEGLRGIYTGLSAGL K T S L K A 1 0 0 0 0 0 0 0 1 1 2 1 0 1 0 2 2 0 0 0 0 0 11 0 1216.6816 I3L1P8;Q02978 I3L1P8 52 62 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes no 2;3 0.00016424 74.267 By MS/MS By MS/MS 4 2 1.1304 1.0543 24.943 6 Median 1.2254 0.97843 10.217 4 0 Linear 1.72 1.4441 28.154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95734000 42847000 52887000 85917000 39020000 46897000 9816500 3827200 5989300 0 0 0 0 0 0 0 0 0 0 0 0 34170 1277 35923 179367;179368;179369;179370;179371;179372 181397;181398;181399;181400;181401;181402 181400 6 TSFLDDAFR TEFIMNEYKDRKITRTSFLDDAFRKNLESA DRKITRTSFLDDAFRKNLESALRFGNPLLV R T S F R K 1 1 0 2 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 9 0 1070.5033 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542;H0YJ21 Q14204 3612 3620 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0022569 73.248 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 2 2 2 1 1 1.0217 0.9627 19.947 9 Median 1.0217 1.0217 NaN 1 0 Median 1.0948 0.95271 1.4748 2 0 Median 0.91821 0.9946 5.1073 2 0 Median 1.013 0.88238 21.591 2 0 Median 1.4831 1.5105 NaN 1 0 Median 0.94005 0.77372 NaN 1 0 Median 20577000 9841500 10735000 5470700 2606600 2864200 2797000 1300300 1496700 10512000 5121400 5390500 1200300 537290 662970 502070 223400 278670 94552 52619 41933 34171 2865 35924 179373;179374;179375;179376;179377;179378;179379;179380;179381 181403;181404;181405;181406;181407 181406 5 TSFLDDAFRK TEFIMNEYKDRKITRTSFLDDAFRKNLESA RKITRTSFLDDAFRKNLESALRFGNPLLVQ R T S R K N 1 1 0 2 0 0 0 0 0 0 1 1 0 2 0 1 1 0 0 0 0 0 10 1 1198.5982 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542;H0YJ21 Q14204 3612 3621 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 6.3763E-05 138.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 1 1 1.151 1.3029 33.295 12 Median 1.0407 1.0651 6.6448 3 0 Median 1.4633 1.3574 21.64 2 0 Median 1.1288 1.3114 3.9792 3 0 Median 1.5166 1.4127 1.3061 2 0 Median 1.4286 1.6202 NaN 1 0 Median 0.53185 0.45761 NaN 1 0 Median 147620000 66659000 80963000 52862000 24164000 28698000 23106000 10051000 13055000 66818000 30421000 36397000 2734600 1112600 1622000 1495300 515020 980250 607390 396570 210830 34172 2865 35925 179382;179383;179384;179385;179386;179387;179388;179389;179390;179391;179392;179393 181408;181409;181410;181411;181412;181413;181414;181415;181416;181417;181418;181419;181420 181411 13 TSFLLNLR APRCPENAFFLDHVRTSFLLNLRRQLPQNV FFLDHVRTSFLLNLRRQLPQNVLDTSWPTP R T S L R R 0 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 8 0 962.55492 F5H6E2;O00159 F5H6E2 790 797 MYO1C Unconventional myosin-Ic yes no 2 0.033626 38.238 By MS/MS By matching By matching By matching 1 1 1 1 1.0995 1.0244 16.046 4 Median 1.1129 1.1147 NaN 1 0 Median 1.0862 0.92833 NaN 1 0 Median 0.88565 0.94147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2287 1.3045 NaN 1 0 Median NaN NaN NaN 0 0 Median 5863300 2867200 2996100 1367900 566520 801400 2882100 1462200 1419900 864500 492410 372080 0 0 0 748760 346080 402680 0 0 0 34173 1042 35926 179394;179395;179396;179397 181421;181422 181421 2 TSFNYAMK MVGRRALIVLAHSERTSFNYAMKEAAAAAL VLAHSERTSFNYAMKEAAAAALKKKGWEVV R T S M K E 1 0 1 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 8 0 960.4375 B4DLR8;H3BRK3;P15559 B4DLR8 16 23 NQO1 NAD(P)H dehydrogenase [quinone] 1 yes no 2 0.076219 29.149 By MS/MS By matching 1 1 1.2734 1.1563 75.034 2 Median 2.0223 1.9655 NaN 1 0 Median 0.80183 0.6802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3624400 1494900 2129500 2943100 1094000 1849100 681320 400960 280370 0 0 0 0 0 0 0 0 0 0 0 0 34174 599 35927 179398;179399 181423 181423 1 TSFTPVGDVFELNFMNVK EHAKSVASRATVLQKTSFTPVGDVFELNFM TPVGDVFELNFMNVKFSSGYYDFLVEVEGD K T S V K F 0 0 2 1 0 0 1 1 0 0 1 1 1 3 1 1 2 0 0 3 0 0 18 0 2043.9976 P04844 P04844 323 340 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 0.031635 23.118 By matching By MS/MS By MS/MS By matching 2 2 1 1 0.9653 0.92888 11.291 6 Median 0.9185 0.875 2.6648 2 0 Median 0.96309 0.84227 20.334 2 0 Median 0.98736 0.96767 NaN 1 0 Median 1.1131 0.97424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15504000 7559200 7945100 4934300 2552600 2381700 1454000 662610 791370 8996700 4287600 4709100 119350 56328 63020 0 0 0 0 0 0 34175 1854 35928 179400;179401;179402;179403;179404;179405 181424;181425 181424 2 TSGADGLVGEDGAADASK EFLIQHLLQAPSPPRTSGADGLVGEDGAAD ADGLVGEDGAADASKGLGGSGGAGGPPGTP R T S S K G 4 0 0 3 0 0 1 4 0 0 1 1 0 0 0 2 1 0 0 1 0 0 18 0 1619.7275 Q9ULL5 Q9ULL5 655 672 PRR12 Proline-rich protein 12 yes yes 2 7.3994E-05 48.704 By MS/MS 1 0.59666 0.66492 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59666 0.66492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4004800 2194400 1810400 0 0 0 0 0 0 4004800 2194400 1810400 0 0 0 0 0 0 0 0 0 34176 4325 35929 179406 181426 181426 1 TSGAPNEVTLSYIGGDEHAAR T S A R 3 1 1 1 0 0 2 3 1 1 1 0 0 0 1 2 2 0 1 1 0 0 21 0 2144.0134 REV__A0A0A0MRA3 yes no 3 0.058461 7.712 By MS/MS 2 1.9545 1.6457 0 2 Median NaN NaN NaN 0 0 Median 1.9545 1.6457 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4065900 1180700 2885200 0 0 0 4065900 1180700 2885200 0 0 0 0 0 0 0 0 0 0 0 0 + 34177 4507 35930 179407;179408 181427 181427 1 TSGHLLLGVVR SVESIISPKVKMALRTSGHLLLGVVRIYHR MALRTSGHLLLGVVRIYHRKAKYLLADCNE R T S V R I 0 1 0 0 0 0 0 2 1 0 3 0 0 0 0 1 1 0 0 2 0 0 11 0 1150.6822 O60216;E5RFV8;E5RIN7;E5RJW1;E5RJK5;A0A140T8W2;Q9H4I0 O60216 55 65 RAD21;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 2 0.00049027 68.625 By MS/MS By MS/MS By MS/MS By matching 1 1 3 2 0.93574 0.91686 21 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86103 0.91686 NaN 1 0 Median 1.469 1.2658 NaN 1 0 Median 0.93574 0.91917 20.317 3 0 Median 0.97224 0.7864 11.433 2 0 Median 36685000 20436000 16250000 0 0 0 0 0 0 6686400 3975300 2711000 2364500 902290 1462200 25157000 14272000 10886000 2477100 1286600 1190500 34178 1603 35931 179409;179410;179411;179412;179413;179414;179415 181428;181429;181430;181431;181432 181428 5 TSGHVDKFADFMVK LEIDCTMLTPEPVLKTSGHVDKFADFMVKD KTSGHVDKFADFMVKDVKNGECFRADHLLK K T S V K D 1 0 0 2 0 0 0 1 1 0 0 2 1 2 0 1 1 0 0 2 0 0 14 1 1580.7657 P41250 P41250 191 204 GARS Glycine--tRNA ligase yes yes 3 0.015547 24.415 By MS/MS 1 1.4091 1.4515 NaN 1 Median 1.4091 1.4515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6062100 2549400 3512800 6062100 2549400 3512800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34179 2301 35932 179416 181433;181434 181433 2 TSGLYTGQEYVQR ILIEFINMFLFPASKTSGLYTGQEYVQRVL SKTSGLYTGQEYVQRVLLVVTALSVPVLFL K T S Q R V 0 1 0 0 0 2 1 2 0 0 1 0 0 0 0 1 2 0 2 1 0 0 13 0 1500.7209 Q9Y487 Q9Y487 638 650 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 yes yes 2 0.012529 34.887 By MS/MS 1 1.5117 1.3031 NaN 1 Median NaN NaN NaN 0 0 Median 1.5117 1.3031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 713030 380580 332450 0 0 0 713030 380580 332450 0 0 0 0 0 0 0 0 0 0 0 0 34180 4440 35933 179417 181435 181435 1 TSGNLENFVVLEQYK SRKTYIVHCQDCARKTSGNLENFVVLEQYK TSGNLENFVVLEQYKMEDLMQVYDQFTLAP K T S Y K M 0 0 2 0 0 1 2 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 15 0 1739.873 O15550;A0A087X0R0;F8W8R6;F5H6S1;H0Y5J3;H0Y6I7;H0Y6V5 O15550 1365 1379 KDM6A Lysine-specific demethylase 6A yes no 2 0.0091547 31.431 By MS/MS By matching 1 1 0.96895 0.95459 35.366 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68917 0.74337 NaN 1 0 Median 1.3623 1.2258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2354800 1256500 1098300 0 0 0 0 0 0 2166300 1174800 991540 188490 81687 106800 0 0 0 0 0 0 34181 111 35934 179418;179419 181436 181436 1 TSGSVYITLK EQFLTELTRLFQKCRTSGSVYITLKKYDGR FQKCRTSGSVYITLKKYDGRTKPIPKKGTV R T S L K K 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 2 0 1 1 0 0 10 0 1067.5863 P37108;H0YLA2 P37108 22 31 SRP14 Signal recognition particle 14 kDa protein yes no 2 0.00036469 107.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1483 1.0074 10.818 6 Median 1.1433 1.0788 NaN 1 0 Median 1.2379 1.0589 NaN 1 0 Median 1.0644 1.019 17.679 2 1 Median 1.1533 0.95836 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.111 0.88218 NaN 1 0 Median 90856000 42725000 48131000 13447000 7030100 6417300 13361000 6066600 7294400 26085000 12168000 13917000 35676000 16411000 19266000 0 0 0 2286200 1050100 1236100 34182 2266 35935 179420;179421;179422;179423;179424;179425 181437;181438;181439;181440;181441;181442;181443;181444;181445;181446 181443 10 TSGSVYITLKK EQFLTELTRLFQKCRTSGSVYITLKKYDGR QKCRTSGSVYITLKKYDGRTKPIPKKGTVE R T S K K Y 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 2 2 0 1 1 0 0 11 1 1195.6812 P37108;H0YLA2 P37108 22 32 SRP14 Signal recognition particle 14 kDa protein yes no 2;3 0.0002405 110.14 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 1 1 1.3228 1.238 20.045 10 Median 1.2383 1.2367 7.7891 2 1 Median 1.3228 1.1696 24.881 2 1 Median 1.4272 1.4511 35.171 2 1 Median 1.4854 1.3386 18.687 2 1 Median 1.4526 1.6701 NaN 1 0 Median 1.3395 1.1298 NaN 1 0 Median 63564000 22307000 41257000 22571000 8300700 14271000 6654900 1351500 5303400 13017000 4664300 8352800 20299000 7586900 12712000 596450 234080 362360 425460 169560 255900 34183 2266 35936 179426;179427;179428;179429;179430;179431;179432;179433;179434;179435;179436 181447;181448;181449;181450;181451;181452;181453;181454;181455;181456;181457;181458 181448 12 TSGTEPADFALPSSR SSGSSGKGAGPLRGKTSGTEPADFALPSSR TSGTEPADFALPSSRGGPGKLRETAVPGPL K T S S R G 2 1 0 1 0 0 1 1 0 0 1 0 0 1 2 3 2 0 0 0 0 0 15 0 1534.7264 A6NNK5;Q12888;M0R142 A6NNK5 1346 1360 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 3.6888E-08 152.85 By MS/MS By MS/MS 1 3 0.86611 0.74682 14.814 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59903 0.65291 NaN 1 0 Median 0.96882 0.88327 12.993 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22837000 12666000 10171000 0 0 0 0 0 0 18628000 10730000 7898600 4209100 1936900 2272200 0 0 0 0 0 0 34184 530 35937 179437;179438;179439;179440 181459;181460;181461;181462;181463;181464;181465 181461 7 TSGTLISFIYPAQNPELLNK MVNPTLGVHEADLLKTSGTLISFIYPAQNP ISFIYPAQNPELLNKLSQRKTTVLAMDQVP K T S N K L 1 0 2 0 0 1 1 1 0 2 3 1 0 1 2 2 2 0 1 0 0 0 20 0 2205.1681 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7;D6RCR6 Q13423 147 166 NNT NAD(P) transhydrogenase, mitochondrial yes no 2;3 8.2599E-09 83.204 By MS/MS By matching 5 3 0.63496 0.61772 26.694 8 Median 0.60608 0.60746 4.3214 5 0 Median 1.0833 0.95353 10.48 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36152000 21775000 14376000 32116000 19693000 12423000 4035300 2081900 1953500 0 0 0 0 0 0 0 0 0 0 0 0 34185 2814 35938 179441;179442;179443;179444;179445;179446;179447;179448 181466;181467;181468;181469;181470;181471 181467 6 TSGVPGNRPGSVIR GNGVIISIPLTETNKTSGVPGNRPGSVIRV KTSGVPGNRPGSVIRVYGDENSDKVTPGTF K T S I R V 0 2 1 0 0 0 0 3 0 1 0 0 0 0 2 2 1 0 0 2 0 0 14 1 1395.7583 A0A087X2D8;O60271 A0A087X2D8 1169 1182 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 4.6998E-05 80.469 By MS/MS By MS/MS 4 3 0.79874 0.79097 9.9525 7 Median 0.69653 0.75087 8.0043 4 0 Median 0.92629 0.86816 9.2291 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32078000 17325000 14753000 12062000 6653100 5408800 20016000 10672000 9344300 0 0 0 0 0 0 0 0 0 0 0 0 34186 134 35939 179449;179450;179451;179452;179453;179454;179455 181472;181473;181474;181475;181476;181477;181478;181479;181480;181481;181482;181483 181478 12 TSGVPSGFNFTAPPVLGK NKASSTSLTSTQPTKTSGVPSGFNFTAPPV VPSGFNFTAPPVLGKHTEPPVTSSATTTSV K T S G K H 1 0 1 0 0 0 0 3 0 0 1 1 0 2 3 2 2 0 0 2 0 0 18 0 1774.9254 A0A494C1F2;P35658;A0A0A0MSW3;H0Y837;B7ZAV2;E9PKD2 A0A494C1F2 1353 1370 NUP214 Nuclear pore complex protein Nup214 yes no 2 5.0501E-06 64.121 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 2 0.68044 0.64547 16.984 8 Median 0.51075 0.4997 11.819 2 1 Median NaN NaN NaN 0 0 Median 0.65677 0.72303 NaN 1 0 Median 0.82295 0.73448 2.9499 2 0 Median 0.66141 0.69331 NaN 1 0 Median 0.70483 0.60077 0.036587 2 0 Median 39759000 23603000 16156000 8354900 5221200 3133800 0 0 0 24017000 14025000 9991700 1061900 596300 465630 5144800 3073900 2070900 1180100 686010 494090 34187 467 35940 179456;179457;179458;179459;179460;179461;179462;179463 181484;181485;181486;181487;181488;181489;181490;181491 181486 8 TSHGEVISVPHK SNPWQSPSGTLPALRTSHGEVISVPHKIIT ALRTSHGEVISVPHKIITHLRKEKYNADYD R T S H K I 0 0 0 0 0 0 1 1 2 1 0 1 0 0 1 2 1 0 0 2 0 0 12 0 1289.6728 Q13505 Q13505 207 218 MTX1 Metaxin-1 yes yes 3 0.031143 20.463 By MS/MS By matching By MS/MS 1 1 1 1.1226 0.94935 6.9512 3 Median 0.91748 0.89851 NaN 1 0 Median 1.1226 0.94935 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2086 1.0316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4586800 2236300 2350500 2377300 1218000 1159200 1436700 675570 761100 0 0 0 772850 342710 430140 0 0 0 0 0 0 34188 2821 35941 179464;179465;179466 181492;181493;181494 181494 3 TSHILSLQK YSALEQKHKAEMEEKTSHILSLQKTGQELQ AEMEEKTSHILSLQKTGQELQSACDALKDQ K T S Q K T 0 0 0 0 0 1 0 0 1 1 2 1 0 0 0 2 1 0 0 0 0 0 9 0 1025.5869 Q14789;E7EU81;H0Y867 Q14789 378 386 GOLGB1 Golgin subfamily B member 1 yes no 2 0.0068944 53.166 By MS/MS 1 1.2946 1.2784 NaN 1 Median 1.2946 1.2784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2056600 762820 1293800 2056600 762820 1293800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34189 2900 35942 179467 181495 181495 1 TSIAIDTIINQK RGQRELIIGDRQTGKTSIAIDTIINQKRFN TGKTSIAIDTIINQKRFNDGSDEKKKLYCI K T S Q K R 1 0 1 1 0 1 0 0 0 4 0 1 0 0 0 1 2 0 0 0 0 0 12 0 1315.7347 P25705;K7EK77;K7ENJ4 P25705 219 230 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 5.2785E-06 153.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 2 1.4142 1.2068 15.878 10 Median 1.249 1.1614 20.404 2 0 Median 1.4073 1.1947 9.0863 3 0 Median 1.1999 1.1857 NaN 1 0 Median 1.6375 1.4169 NaN 1 0 Median 1.107 1.0579 NaN 1 1 Median 1.8308 1.5442 0.48874 2 0 Median 100450000 47105000 53349000 79701000 38288000 41413000 9025600 3704100 5321500 7355200 3340000 4015300 942880 361180 581700 2717700 1178000 1539700 711340 233550 477790 34190 2135 35943 179468;179469;179470;179471;179472;179473;179474;179475;179476;179477 181496;181497;181498;181499;181500;181501;181502;181503 181498 8 TSIAIDTIINQKR RGQRELIIGDRQTGKTSIAIDTIINQKRFN GKTSIAIDTIINQKRFNDGSDEKKKLYCIY K T S K R F 1 1 1 1 0 1 0 0 0 4 0 1 0 0 0 1 2 0 0 0 0 0 13 1 1471.8358 P25705;K7EK77;K7ENJ4 P25705 219 231 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 2.1257E-08 125.56 By MS/MS 1 0.83732 0.83496 NaN 1 Median 0.83732 0.83496 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9522100 4357300 5164900 9522100 4357300 5164900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34191 2135 35944 179478 181504 181504 1 TSIDAYDNFDNISLAQR LNNLFITEEDYQALRTSIDAYDNFDNISLA IDAYDNFDNISLAQRLEKHELIEFRRIAAY R T S Q R L 2 1 2 3 0 1 0 0 0 2 1 0 0 1 0 2 1 0 1 0 0 0 17 0 1941.9068 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1486 1502 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 2.4541E-51 217.35 By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 7 3 1 1 1.1719 1.0806 16.856 21 Median 1.1719 1.1163 13.735 9 1 Median 1.2167 1.0344 12.561 7 0 Median 0.81965 0.89345 12.054 3 0 Median 1.2411 1.0902 NaN 1 0 Median 0.87554 0.92989 NaN 1 0 Median NaN NaN NaN 0 0 Median 283070000 123050000 160020000 211170000 89609000 121570000 24309000 10126000 14183000 44277000 21970000 22307000 2536400 1062100 1474300 775300 284910 490390 0 0 0 34192 44 35945 179479;179480;179481;179482;179483;179484;179485;179486;179487;179488;179489;179490;179491;179492;179493;179494;179495;179496;179497;179498;179499 181505;181506;181507;181508;181509;181510;181511;181512;181513;181514;181515;181516;181517;181518;181519;181520;181521;181522;181523;181524;181525 181518 21 TSIEDQDELSSLLQVPLVAGTVNR SYCVFSNQGGLVHPKTSIEDQDELSSLLQV SSLLQVPLVAGTVNRGSEVIAAGMVVNDWC K T S N R G 1 1 1 2 0 2 2 1 0 1 4 0 0 0 1 3 2 0 0 3 0 0 24 0 2583.3392 P56537;A0A0U1RQV5 P56537 165 188 EIF6 Eukaryotic translation initiation factor 6 yes no 3 0.061591 6.7232 By matching By MS/MS 1 1 1.2261 1.0971 18.387 2 Median 1.3333 1.2494 NaN 1 0 Median 1.1276 0.96331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1092800 472400 620370 384550 153330 231220 708230 319070 389150 0 0 0 0 0 0 0 0 0 0 0 0 34193 2513 35946 179500;179501 181526 181526 1 TSIETNIR NSPGIEGLSRRRKKRTSIETNIRVALEKSF SRRRKKRTSIETNIRVALEKSFLENQKPTS R T S I R V 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 2 0 0 0 0 0 8 0 932.49271 P14859;A0A0C4DG88;A0A0A0MT46;Q9UKI9;H0YLC5 P14859 384 391 POU2F1;POU2F3 POU domain, class 2, transcription factor 1;POU domain protein;POU domain, class 2, transcription factor 3 yes no 2 0.01208 55.676 By MS/MS By MS/MS 1 1 0.98772 0.94832 9.0326 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82975 0.88964 NaN 1 0 Median 1.1758 1.0109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2587400 1231300 1356200 0 0 0 0 0 0 1559700 783750 775930 1027800 447520 580240 0 0 0 0 0 0 34194 2010 35947 179502;179503 181527;181528 181527 2 TSIFIAHR EETILGAMKDVVKHRTSIFIAHRLSTVVDA KDVVKHRTSIFIAHRLSTVVDADEIIVLDQ R T S H R L 1 1 0 0 0 0 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 8 0 943.52395 O75027;A0A590UJS8;B4DGL8;A0A087WW65 O75027 659 666 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 8.1234E-05 111.73 By MS/MS 1 1.3269 1.0616 NaN 1 Median NaN NaN NaN 0 0 Median 1.3269 1.0616 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22511000 9611100 12900000 0 0 0 22511000 9611100 12900000 0 0 0 0 0 0 0 0 0 0 0 0 34195 1642 35948 179504 181529 181529 1 TSIFWNDVKDPVSIEER ECRDQYSVIFESGDRTSIFWNDVKDPVSIE IFWNDVKDPVSIEERARWTETYVRWSPKGT R T S E R A 0 1 1 2 0 0 2 0 0 2 0 1 0 1 1 2 1 1 0 2 0 0 17 1 2034.0058 P55884;C9JZG1;C9JQN7 P55884 316 332 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 3 7.8915E-06 59.003 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 0.95376 0.98905 6.2933 8 Median 0.96784 1.0004 5.3819 2 0 Median 0.9509 0.92217 3.0464 2 0 Median 0.94674 1.0741 NaN 1 0 Median 1.0689 1.0371 2.9459 2 0 Median 0.85591 0.94916 NaN 1 0 Median NaN NaN NaN 0 0 Median 37811000 19130000 18681000 21345000 10909000 10436000 5964300 2879600 3084700 6819000 3536000 3283000 1766000 754790 1011200 1917500 1051200 866270 0 0 0 34196 2504 35949 179505;179506;179507;179508;179509;179510;179511;179512 181530;181531;181532;181533;181534;181535;181536;181537;181538 181531 9 TSIHEAMEQQSISISK VCLIDEFDKMNDQDRTSIHEAMEQQSISIS SIHEAMEQQSISISKAGIVTSLQARCTVIA R T S S K A 1 0 0 0 0 2 2 0 1 3 0 1 1 0 0 4 1 0 0 0 0 0 16 0 1787.8724 P49736;H0Y8E6 P49736 598 613 MCM2 DNA replication licensing factor MCM2 yes no 2;3 1.2774E-14 178.22 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 3 0.99098 1.0064 14.22 12 Median 0.92914 0.89317 8.3671 4 0 Linear 1.1868 1.0006 0.73271 3 0 Plateau 0.9992 1.0479 1.9433 3 0 Plateau 1.3045 1.1277 10.269 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 189620000 94783000 94833000 83380000 43582000 39798000 27981000 12961000 15020000 65884000 33594000 32290000 12371000 4646500 7724900 0 0 0 0 0 0 34197 2393 35950;35951 179513;179514;179515;179516;179517;179518;179519;179520;179521;179522;179523;179524;179525 181539;181540;181541;181542;181543;181544;181545;181546;181547;181548;181549;181550;181551;181552;181553;181554;181555;181556;181557 181545 1105 19 TSIIEAQYLR IDYSQMDELALLSLRTSIIEAQYLRYHDIE LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL R T S L R Y 1 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1192.6452 Q14690;A0A3B3IUD7 Q14690 437 446 PDCD11 Protein RRP5 homolog yes no 2 4.1715E-06 155.75 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 1.4432 1.1865 76.912 7 Median NaN NaN NaN 0 0 Median 1.9286 1.6064 NaN 1 0 Median 0.73518 0.80448 44.289 2 1 Median 1.6533 1.4506 NaN 1 0 Median 0.20748 0.22216 NaN 1 0 Median 1.9598 1.6077 42.961 2 0 Median 33605000 17488000 16118000 0 0 0 1496500 536070 960410 25387000 12787000 12599000 1530500 563840 966630 4281600 3296300 985310 910280 304170 606110 34198 448 35952 179526;179527;179528;179529;179530;179531;179532 181558;181559;181560;181561;181562 181560 5 TSILAAANPISGHYDR ISITKAGVKATLNARTSILAAANPISGHYD SILAAANPISGHYDRSKSLKQNINLSAPIM R T S D R S 3 1 1 1 0 0 0 1 1 2 1 0 0 0 1 2 1 0 1 0 0 0 16 0 1684.8533 Q14566 Q14566 497 512 MCM6 DNA replication licensing factor MCM6 yes yes 2;3 4.8589E-10 151.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 0.76585 0.74811 16.666 11 Median 0.73889 0.71017 18.188 4 0 Median 1.0055 0.86936 9.4925 3 0 Median 0.68469 0.7233 8.4417 2 0 Median 1.006 0.85392 10.578 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187780000 104440000 83345000 90835000 50732000 40103000 20870000 10310000 10559000 75132000 42924000 32209000 946340 472450 473890 0 0 0 0 0 0 34199 2881 35953 179533;179534;179535;179536;179537;179538;179539;179540;179541;179542;179543 181563;181564;181565;181566;181567;181568;181569;181570;181571;181572;181573 181571 11 TSILAVSDVSSSKPSIK NKGVGQANKPDETSKTSILAVSDVSSSKPS ILAVSDVSSSKPSIKAVIVSSPKAKATVSK K T S I K A 1 0 0 1 0 0 0 0 0 2 1 2 0 0 1 6 1 0 0 2 0 0 17 1 1717.9462 Q14966 Q14966 1379 1395 ZNF638 Zinc finger protein 638 yes yes 3 7.6889E-06 59.606 By MS/MS By MS/MS By matching By MS/MS 1 1 2 2 1.0598 1.0581 13.779 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83433 0.96942 NaN 1 0 Median 1.0937 1.0279 NaN 1 0 Median 1.0209 1.119 3.833 2 0 Median 1.2952 1.168 25.57 2 0 Median 46080000 22656000 23424000 0 0 0 0 0 0 33724000 16665000 17059000 3195900 1597700 1598200 7795400 3739900 4055500 1364500 653540 710940 34200 2903 35954 179544;179545;179546;179547;179548;179549 181574;181575;181576;181577 181574 4 TSKAEELLAEEK GVQEPTTGNWRGMLKTSKAEELLAEEKSKP MLKTSKAEELLAEEKSKPIPIMPASPQKGH K T S E K S 2 0 0 0 0 0 4 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 12 1 1346.6929 O00429 O00429 595 606 DNM1L Dynamin-1-like protein yes yes 2;3 0.00024246 125.72 By MS/MS By matching 2 1 0.93431 0.83929 7.9837 3 Median 0.87245 0.89901 9.7215 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9402 0.83796 NaN 1 0 Median 12420000 5993100 6426800 11003000 5310700 5692600 0 0 0 0 0 0 0 0 0 0 0 0 1416600 682390 734190 34201 1463 35955 179550;179551;179552 181578;181579;181580 181580 3 TSKPFNPLLGETFELDR VAAFTVSSYSTTVFRTSKPFNPLLGETFEL KPFNPLLGETFELDRLEENGYRSLCEQVSH R T S D R L 0 1 1 1 0 0 2 1 0 0 3 1 0 2 2 1 2 0 0 0 0 0 17 1 1963.0051 P22059;H0YCV6 P22059 491 507 OSBP Oxysterol-binding protein 1 yes no 3 0.0074823 24.793 By MS/MS By matching By matching 1 1 1 1.0786 0.97678 39.936 3 Median NaN NaN NaN 0 0 Median 0.52688 0.52628 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1558 1.1108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0786 0.97678 NaN 1 0 Median 6107100 3282400 2824600 0 0 0 2646100 1680100 966030 0 0 0 284510 133590 150920 0 0 0 3176400 1468700 1707700 34202 2096 35956 179553;179554;179555 181581 181581 1 TSLALDESLFR KGFAYIEFSDKESVRTSLALDESLFRGRQI ESVRTSLALDESLFRGRQIKVIPKRTNRPG R T S F R G 1 1 0 1 0 0 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 11 0 1250.6507 Q86U42;B4DEH8;G3V4T2;H0YJH9 Q86U42 228 238 PABPN1 Polyadenylate-binding protein 2 yes no 2 5.4301E-28 163.32 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 5 5 1.0839 1.0049 26.506 17 Median 1.3665 1.3533 31.074 2 0 Median 1.038 0.89966 22.897 2 0 Median 0.97043 1.0106 2.9704 2 0 Median 1.0351 0.84822 47.369 2 1 Median 0.87819 0.8961 8.3966 4 1 Median 1.6238 1.3128 23.703 5 0 Median 179700000 91506000 88199000 3311500 1621300 1690200 974090 545970 428120 30183000 15090000 15093000 28211000 14389000 13822000 100710000 52061000 48645000 16319000 7798800 8520000 34203 3270 35957 179556;179557;179558;179559;179560;179561;179562;179563;179564;179565;179566;179567;179568;179569;179570;179571;179572;179573 181582;181583;181584;181585;181586;181587;181588;181589;181590;181591;181592;181593;181594 181590 13 TSLAQQLQR ______________________________ ______________________________ M T S Q R L 1 1 0 0 0 3 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1043.5724 Q9H583;Q5T3Q7;Q6P664 Q9H583 2 10 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00019012 142.64 By matching By matching By MS/MS 1 1 1 1.2962 1.2384 7.9436 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1238 1.2384 NaN 1 0 Median 1.3295 1.1572 NaN 1 0 Median 1.2962 1.3557 NaN 1 0 Median NaN NaN NaN 0 0 Median 10118000 5066900 5051000 0 0 0 0 0 0 5068800 2929800 2139000 193850 80335 113510 4855200 2056700 2798500 0 0 0 34204 3086 35958 179574;179575;179576 181595;181596 181596 2 TSLATILDGGEENLEK STACQQLEVFSRVLRTSLATILDGGEENLE SLATILDGGEENLEKNLPEFAKMVCHGEHT R T S E K N 1 0 1 1 0 0 3 2 0 1 3 1 0 0 0 1 2 0 0 0 0 0 16 0 1688.8469 H0UI80;X6RLT1;Q8IXH7 H0UI80 216 231 TH1L;NELFCD Negative elongation factor C/D yes no 2 0.00050587 45.915 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.0084 0.93906 32.311 5 Median 1.0084 0.95584 NaN 1 0 Median 1.061 0.93906 NaN 1 0 Median 0.863 0.90458 27.117 2 1 Median 0.46144 0.48154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16548000 8622100 7925700 8051700 4082000 3969700 664940 289120 375820 7560600 4074300 3486300 270560 176630 93922 0 0 0 0 0 0 34205 1138 35959 179577;179578;179579;179580;179581 181597;181598 181597 2 TSLEGYPAGGSLPYSIQTAEK SVPLYLIYPSVENVRTSLEGYPAGGSLPYS PAGGSLPYSIQTAEKQNWLHSYFHKWSAET R T S E K Q 2 0 0 0 0 1 2 3 0 1 2 1 0 0 2 3 2 0 2 0 0 0 21 0 2168.0637 G3V2F4;E7EPD8;Q9NUW8;H0YJ44 G3V2F4 449 469 TDP1 Tyrosyl-DNA phosphodiesterase 1 yes no 2 0.046652 18.596 By MS/MS By matching By matching 1 1 1 0.85427 0.73617 20.701 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59864 0.63619 NaN 1 0 Median 0.85427 0.73617 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1285 0.9572 NaN 1 0 Median 4447900 2193900 2253900 0 0 0 0 0 0 4097800 2027400 2070500 216140 104170 111970 0 0 0 133930 62407 71525 34206 869 35960 179582;179583;179584 181599 181599 1 TSLEVPEINALLLVPK KKGCKELWRRQPPYRTSLEVPEINALLLVP SLEVPEINALLLVPKENSLILAGGDCQLHT R T S P K E 1 0 1 0 0 0 2 0 0 1 4 1 0 0 2 1 1 0 0 2 0 0 16 0 1735.0131 Q86W42 Q86W42 122 137 THOC6 THO complex subunit 6 homolog yes yes 2 0.0060059 32.127 By MS/MS 1 0.65654 0.63218 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65654 0.63218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15914000 9292000 6621600 0 0 0 0 0 0 15914000 9292000 6621600 0 0 0 0 0 0 0 0 0 34207 3290 35961 179585 181600;181601 181600 2 TSLGPNGLDK KSHIMAAKAVANTMRTSLGPNGLDKMMVDK ANTMRTSLGPNGLDKMMVDKDGDVTVTNDG R T S D K M 0 0 1 1 0 0 0 2 0 0 2 1 0 0 1 1 1 0 0 0 0 0 10 0 1000.5189 P48643;B7ZAR1;E9PCA1 P48643 50 59 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.00037664 80.755 By MS/MS By matching 1 1 1.1952 1.0741 50.097 2 Median 0.80337 0.7537 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.778 1.5307 NaN 1 0 Median 16336000 7569900 8766200 12386000 6090800 6295000 0 0 0 0 0 0 0 0 0 0 0 0 3950300 1479100 2471200 34208 2364 35962 179586;179587 181602;181603 181603 2 TSLKEDEDKSGPIFIVVPNGK SSKAKSAQGKKMPSKTSLKEDEDKSGPIFI EDKSGPIFIVVPNGKEQRMKDEKGLKVLKW K T S G K E 0 0 1 2 0 0 2 2 0 2 1 3 0 1 2 2 1 0 0 2 0 0 21 2 2272.1951 Q14008 Q14008 1148 1168 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 8.1494E-05 36.856 By matching By MS/MS By matching 1 1 1 0.61425 0.70688 9.8188 3 Median 0.61425 0.67252 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61012 0.70688 NaN 1 0 Median 0.80193 0.81277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10999000 6735100 4264300 2590600 1583100 1007500 0 0 0 7692100 4767000 2925100 716660 384920 331740 0 0 0 0 0 0 34209 2850 35963 179588;179589;179590 181604 181604 1 TSLMNQYVNK VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ SGVGKTSLMNQYVNKKFSNQYKATIGADFL K T S N K K 0 0 2 0 0 1 0 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 10 0 1196.586 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 P51149 22 31 RAB7A Ras-related protein Rab-7a yes no 2 0.000783 98.523 By MS/MS 1 1.2589 1.055 NaN 1 Median NaN NaN NaN 0 0 Median 1.2589 1.055 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8263300 4379500 3883800 0 0 0 8263300 4379500 3883800 0 0 0 0 0 0 0 0 0 0 0 0 34210 2428 35964 179591 181605 181605 1 TSLMNQYVNKK VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ GVGKTSLMNQYVNKKFSNQYKATIGADFLT K T S K K F 0 0 2 0 0 1 0 0 0 0 1 2 1 0 0 1 1 0 1 1 0 0 11 1 1324.6809 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 P51149 22 32 RAB7A Ras-related protein Rab-7a yes no 2;3 3.3045E-05 141.47 By MS/MS By MS/MS By matching 3 2 1 1.0451 1.0191 23.373 6 Median 1.1283 1.0566 16.031 3 0 Median 0.93768 0.85651 35.36 2 0 Median 0.87766 0.88533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58594000 26722000 31873000 41422000 18622000 22800000 14978000 7074900 7902700 2194700 1024300 1170400 0 0 0 0 0 0 0 0 0 34211 2428 35965 179592;179593;179594;179595;179596;179597 181606;181607;181608;181609;181610;181611;181612;181613 181613 8 TSLNNPYIIR PGRGSLRKTRPLVVKTSLNNPYIIRWSALE PLVVKTSLNNPYIIRWSALESEDMHFILQT K T S I R W 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 1 1 0 1 0 0 0 10 0 1189.6455 P78345;Q5VUC9;Q5VUC3 P78345 23 32 RPP38 Ribonuclease P protein subunit p38 yes no 2 0.0072482 61.999 By MS/MS By MS/MS 1 1 1.0358 0.98181 121.37 2 Median 2.4808 2.3161 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.43247 0.41619 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9410300 3221000 6189300 7806800 2128200 5678600 0 0 0 1603500 1092800 510710 0 0 0 0 0 0 0 0 0 34212 2640 35966 179598;179599 181614;181615 181614 2 TSLPNLFQDK EENEALHKMIANEQKTSLPNLFQDKNRPCL ANEQKTSLPNLFQDKNRPCLSNWPEDTDVL K T S D K N 0 0 1 1 0 1 0 0 0 0 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1161.603 Q86UV5;A0A0A0MRS6 Q86UV5 718 727 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.0013144 66.621 By MS/MS 1 0.80455 0.86009 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80455 0.86009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9417100 5081500 4335600 0 0 0 0 0 0 9417100 5081500 4335600 0 0 0 0 0 0 0 0 0 34213 3281 35967 179600 181616;181617 181617 2 TSLPWQGLK DDMESLGYVLMYFNRTSLPWQGLKRQCLTV LMYFNRTSLPWQGLKRQCLTVLPRLVSNSW R T S L K R 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 1 1 0 0 0 0 9 0 1028.5655 U3KPX3;A0A590UJ43;P48729;D6REM4;E7ETM0;H0Y9X2;U3KQK7 U3KPX3 217 225 CSNK1A1 Casein kinase I isoform alpha yes no 2 0.0049965 58.981 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.8585 0.8483 12.314 5 Median 0.83085 0.90009 15.393 2 0 Median NaN NaN NaN 0 0 Median 0.88737 0.8483 NaN 1 0 Median 1.0623 0.89459 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8585 0.71949 NaN 1 0 Median 13319000 6748800 6570600 8789300 4423700 4365600 0 0 0 2910700 1565300 1345300 904310 449260 455050 0 0 0 715240 310520 404720 34214 481 35968 179601;179602;179603;179604;179605 181618;181619;181620 181618 3 TSLSAEDAEVTK KNVEGLDLLFMSHKRTSLSAEDAEVTKAFE HKRTSLSAEDAEVTKAFEEDIETPPTRNIP R T S T K A 2 0 0 1 0 0 2 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 12 0 1249.6038 Q9P2D1 Q9P2D1 2532 2543 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.00062094 66.595 By MS/MS 1 0.70055 0.75783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70055 0.75783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3708400 1988200 1720200 0 0 0 0 0 0 3708400 1988200 1720200 0 0 0 0 0 0 0 0 0 34215 4220 35969 179606 181621;181622 181622 2 TSLTVADKIEDQKK VSILKINSQLKHIFKTSLTVADKIEDQKKE KTSLTVADKIEDQKKELDGFLSILCNNLHE K T S K K E 1 0 0 2 0 1 1 0 0 1 1 3 0 0 0 1 2 0 0 1 0 0 14 2 1574.8516 P52732 P52732 660 673 KIF11 Kinesin-like protein KIF11 yes yes 3 0.00099627 39.629 By MS/MS By MS/MS By matching 1 1 1 0.88961 0.89814 18.575 3 Median 0.85679 0.89814 NaN 1 0 Median 0.88961 0.8449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1012 1.1964 NaN 1 0 Median 9757500 4659400 5098100 4367100 2244500 2122600 4399900 2039000 2360900 0 0 0 0 0 0 0 0 0 990500 375840 614660 34216 2454 35970 179607;179608;179609 181623;181624;181625 181625 3 TSLVEYLAAVTGR SQNAVLLEGPIGCGKTSLVEYLAAVTGRTK GKTSLVEYLAAVTGRTKPPQLLKVQLGDQT K T S G R T 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 2 0 1 2 0 0 13 0 1378.7456 Q9NU22;Q5T795 Q9NU22 336 348 MDN1 Midasin yes no 2 0.0042583 41.283 By MS/MS By matching By MS/MS By matching 1 1 2 2 1.104 1.0777 16.516 6 Median 1.4305 1.4208 NaN 1 0 Median 1.0211 0.89823 NaN 1 0 Median 1.0569 1.1376 10.31 2 0 Median 1.1832 1.0298 9.1028 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2130300 1021700 1108600 717390 307460 409930 535400 274680 260720 788470 399710 388760 89065 39849 49216 0 0 0 0 0 0 34217 4112 35971 179610;179611;179612;179613;179614;179615 181626;181627;181628;181629 181626 4 TSLVGALAK LKKPILLEGSPGVGKTSLVGALAKASGNTL SPGVGKTSLVGALAKASGNTLVRINLSEQT K T S A K A 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 858.51747 Q9NU22 Q9NU22 1760 1768 MDN1 Midasin yes yes 2 0.0022552 73.26 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1862 1.1543 16.205 4 Median NaN NaN NaN 0 0 Median 0.97334 0.85134 NaN 1 0 Median 1.1316 1.2103 NaN 1 0 Median 1.2434 1.1702 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3241 1.1387 NaN 1 0 Median 13914000 6579200 7334800 0 0 0 2203400 1045200 1158200 10109000 4813700 5294800 939630 394090 545540 0 0 0 662390 326180 336210 34218 4112 35972 179616;179617;179618;179619 181630;181631;181632;181633 181630 4 TSMESLIHHFK VDDAKVSPPKRAEMKTSMESLIHHFKLYTE AEMKTSMESLIHHFKLYTEGYQVPPGATYT K T S F K L 0 0 0 0 0 0 1 0 2 1 1 1 1 1 0 2 1 0 0 0 0 0 11 0 1328.6547 O75306 O75306 373 383 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 3 0.0027354 38.634 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.2066 1.1143 45.355 6 Median 0.71385 0.69075 40.081 2 0 Median 1.9186 1.6971 5.6067 2 0 Median 0.9702 0.94323 NaN 1 0 Median 1.4733 1.3165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26618000 13088000 13529000 13455000 7285800 6168700 1387300 436700 950580 8617300 4262700 4354600 3158700 1103200 2055500 0 0 0 0 0 0 34219 1657 35973 179620;179621;179622;179623;179624;179625 181634;181635;181636;181637 181635 4 TSMETALALEK ISLEECRGHKRARKRTSMETALALEKLFPK ARKRTSMETALALEKLFPKQCQVLGIVTPG R T S E K L 2 0 0 0 0 0 2 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 11 0 1192.6009 Q8NEZ5;H3BTH6;H3BVA4;H3BUC1 Q8NEZ5 127 137 FBXO22 F-box only protein 22 yes no 2 0.00047715 68.893 By MS/MS By matching By matching 1 1 1 0.53825 0.8031 100.73 3 Plateau 1.1887 1.1076 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.24373 0.28735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.18815 0.15445 NaN 1 0 Median 11865000 5983500 5881200 8692200 3863800 4828400 0 0 0 2912400 1902300 1010200 0 0 0 0 0 0 259970 217400 42564 34220 3432 35974 179626;179627;179628 181638;181639 181638 2 TSMGGTQQQFVEGVR LVQLLVRAHQDTQRRTSMGGTQQQFVEGVR TSMGGTQQQFVEGVRMEEIVEGCTGALHIL R T S V R M 0 1 0 0 0 3 1 3 0 0 0 0 1 1 0 1 2 0 0 2 0 0 15 0 1623.7675 A0A2R8Y804;A0A2R8Y543;A0A2R8Y5Z1;B4DGU4;A0A2R8YCH5;A0A2R8Y5A3;P35222;A0A2R8Y5C3;A0A2R8Y750;A0A2R8Y6G0 A0A2R8Y804 551 565 CTNNB1 Catenin beta-1 yes no 2 2.3467E-05 85.288 By MS/MS By MS/MS By matching 1 1 1 0.89051 0.86497 27.39 3 Median 0.89051 0.86497 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59461 0.6389 NaN 1 0 Median 1.3008 1.1038 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6793100 4368600 2424500 3327000 2201300 1125700 0 0 0 3035800 1988300 1047500 430200 179010 251200 0 0 0 0 0 0 34221 368 35975 179629;179630;179631 181640;181641 181641 2 TSMNVNEIFMAIAK YADDNSLLFMETSAKTSMNVNEIFMAIAKK KTSMNVNEIFMAIAKKLPKNEPQNPGANSA K T S A K K 2 0 2 0 0 0 1 0 0 2 0 1 2 1 0 1 1 0 0 1 0 0 14 0 1567.7738 P20339 P20339 166 179 RAB5A Ras-related protein Rab-5A yes yes 2 0.052059 35.414 By MS/MS 1 1.4847 1.243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4847 1.243 NaN 1 1 Median 693490 198310 495190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 693490 198310 495190 34222 2078 35976 179632 181642 181642 1 TSMQSVLQEWK FQKRSSVLTQVNQLKTSMQSVLQEWKIYDQ NQLKTSMQSVLQEWKIYDQLYDEVNMMTIR K T S W K I 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 2 1 1 0 1 0 0 11 0 1335.6493 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3;G3V4T3 Q8WXH0 5270 5280 SYNE2 Nesprin-2 yes no 2 0.00089327 85.676 By MS/MS By matching By MS/MS 1 1 1 0.7863 0.8457 22.463 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7863 0.8457 NaN 1 1 Median 1.1782 1.0814 NaN 1 0 Median 0.65384 0.69053 NaN 1 0 Median NaN NaN NaN 0 0 Median 7282800 4116200 3166600 0 0 0 0 0 0 5316200 2880200 2436000 330250 139240 191010 1636300 1096700 539600 0 0 0 34223 3521 35977 179633;179634;179635 181643;181644 181643 2 TSMTEEYR DSISSQLGPIHPPPRTSMTEEYRVPDGMVG PIHPPPRTSMTEEYRVPDGMVGLIIGRGGE R T S Y R V 0 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 2 0 1 0 0 0 8 0 1015.4281 Q92945;A0A087WTP3;M0R0I5 Q92945 143 150 KHSRP Far upstream element-binding protein 2 yes no 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS 1 2 1 1.0139 0.96966 4.3902 4 Median NaN NaN NaN 0 0 Median 1.1457 0.9965 NaN 1 0 Median 0.87086 0.92785 3.441 2 0 Median 1.1476 0.989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11252000 5321600 5930900 0 0 0 2005300 931600 1073700 4346900 2068300 2278600 4900200 2321700 2578500 0 0 0 0 0 0 34224 3568 35978 179636;179637;179638;179639 181645;181646;181647;181648;181649;181650;181651 181648 7 TSMTEEYRVPDGMVGLIIGR DSISSQLGPIHPPPRTSMTEEYRVPDGMVG EYRVPDGMVGLIIGRGGEQINKIQQDSGCK R T S G R G 0 2 0 1 0 0 2 3 0 2 1 0 2 0 1 1 2 0 1 2 0 0 20 1 2223.1028 Q92945;A0A087WTP3 Q92945 143 162 KHSRP Far upstream element-binding protein 2 yes no 3 3.4254E-09 82.482 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 1 6 4 1 0.85212 0.96913 6.6347 14 Median 0.92769 0.95115 11.157 2 0 Median 0.84043 0.83151 NaN 1 0 Median 0.84126 0.96323 3.1454 6 0 Median 1.1085 0.98228 5.6227 4 0 Median 0.85149 0.92517 NaN 1 0 Median NaN NaN NaN 0 0 Median 129110000 68924000 60184000 6273100 3128800 3144300 7743600 3876100 3867400 105970000 57012000 48956000 4257300 1936900 2320400 4866100 2970100 1896000 0 0 0 34225 3568 35979;35980;35981 179640;179641;179642;179643;179644;179645;179646;179647;179648;179649;179650;179651;179652;179653 181652;181653;181654;181655;181656;181657;181658;181659;181660;181661;181662;181663;181664;181665;181666;181667 181666 1782;1783 16 TSMTQSLR ______________________________ ______________________________ M T S L R E 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 2 2 0 0 0 0 0 8 0 922.45422 Q9NPJ3 Q9NPJ3 2 9 ACOT13 Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed yes yes 2 0.0033033 100.19 By MS/MS By MS/MS By MS/MS 1 1 1 1.3466 1.0431 20.063 3 Plateau 1.0529 1.0255 NaN 1 0 Median 1.7221 1.4636 NaN 1 0 Median 1.0276 1.0431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17028000 6876800 10151000 5721900 2782400 2939600 9783500 3353200 6430200 1522500 741210 781330 0 0 0 0 0 0 0 0 0 34226 4055 35982 179654;179655;179656 181668;181669;181670;181671 181670 4 TSNEVQYDQR RDISEVIALGVPNPRTSNEVQYDQRLFNQS VPNPRTSNEVQYDQRLFNQSKGMDSGFAGG R T S Q R L 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 10 0 1238.5527 Q13573;G3V3A4;G3V4X8 Q13573 401 410 SNW1 SNW domain-containing protein 1 yes no 2 0.0034879 56.563 By MS/MS By MS/MS 1 1 0.99365 1.0218 16.981 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0958 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90103 0.90615 NaN 1 0 Median NaN NaN NaN 0 0 Median 3171200 1736900 1434300 0 0 0 0 0 0 1362000 736120 625930 0 0 0 1809200 1000800 808340 0 0 0 34227 2826 35983 179657;179658 181672;181673;181674;181675 181674 4 TSNHLLGPKPFPLDR HGKIKKTNFLKKHEKTSNHLLGPKPFPLDR TSNHLLGPKPFPLDRLLAILYSIVDSRVAP K T S D R L 0 1 1 1 0 0 0 1 1 0 3 1 0 1 3 1 1 0 0 0 0 0 15 1 1690.9155 O43913 O43913 347 361 ORC5 Origin recognition complex subunit 5 yes yes 4 0.029885 17.703 By MS/MS By matching 1 1 0.60348 0.59463 1.3238 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58156 0.58909 NaN 1 0 Median 0.62623 0.60023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12013000 6217900 5795000 0 0 0 0 0 0 6527300 3861200 2666100 5485600 2356700 3128900 0 0 0 0 0 0 34228 1599 35984 179659;179660 181676 181676 1 TSNLLLSHAGILK VKHLHDNWILHRDLKTSNLLLSHAGILKVG LKTSNLLLSHAGILKVGDFGLAREYGSPLK K T S L K V 1 0 1 0 0 0 0 1 1 1 4 1 0 0 0 2 1 0 0 0 0 0 13 0 1365.798 Q5QPR4;A0A0D9SEI3;Q5QPR3;A0A0D9SER5;A0A0D9SEN2;Q9UQ88;P21127 Q5QPR4 516 528 CDK11A;CDK11B Cyclin-dependent kinase 11A;Cyclin-dependent kinase 11B yes no 2;3 0.0013433 55.353 By matching By matching By MS/MS By matching 2 1 2 2 1.3208 1.3201 28.247 7 Median 1.1785 1.171 16.944 2 0 Median 1.3201 1.2081 NaN 1 0 Median 1.3123 1.4462 18.08 2 0 Median 2.2425 1.9217 36.666 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15186000 6638900 8547200 5263400 2509800 2753600 261290 106570 154730 8295700 3539400 4756300 1365700 483070 882650 0 0 0 0 0 0 34229 259 35985 179661;179662;179663;179664;179665;179666;179667 181677;181678;181679;181680 181680 4 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR DDEGSTAATDGSTLRTSPADHGGSVGSESG SAVDSVAGEHSVSGRSSAYGDATAEGHPAG R T S G R S 3 1 0 2 0 0 2 7 2 0 0 0 0 0 1 8 1 0 0 4 0 0 31 0 2839.2605 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 2884 2914 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3;4 3.1146E-39 96.748 By MS/MS By MS/MS By matching 3 1 1 0.79016 0.77821 21.867 5 Median 0.96278 0.93805 9.6041 3 0 Plateau 0.79016 0.63166 NaN 1 0 Median 0.50304 0.5633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60315000 33061000 27254000 25811000 14126000 11685000 32844000 17813000 15031000 1659500 1121500 538010 0 0 0 0 0 0 0 0 0 34230 3089 35986 179668;179669;179670;179671;179672 181681;181682;181683;181684;181685;181686 181685 6 TSPEMDIQNPDDGAR AERIEINRNEKKPMKTSPEMDIQNPDDGAR TSPEMDIQNPDDGARKPIPRDKVTENKRCL K T S A R K 1 1 1 3 0 1 1 1 0 1 0 0 1 0 2 1 1 0 0 0 0 0 15 0 1644.705 P46013 P46013 3127 3141 MKI67 Antigen KI-67 yes yes 2 6.7656E-06 86.313 By MS/MS By MS/MS 1 1 0.69897 0.73471 3.8169 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67669 0.71514 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72199 0.75481 NaN 1 1 Median NaN NaN NaN 0 0 Median 10476000 5762700 4713500 0 0 0 0 0 0 8955500 4896500 4059100 0 0 0 1520600 866210 654410 0 0 0 34231 2335 35987 179673;179674 181687;181688;181689 181688 3 TSPFELYQFFVR LGKSAGNAVWLNRDKTSPFELYQFFVRQPD RDKTSPFELYQFFVRQPDDSVERYLKLFTF K T S V R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 3 1 1 1 0 1 1 0 0 12 0 1532.7664 Q9Y2Z4;H0YHS6 Q9Y2Z4 297 308 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2 0.0011423 56.563 By matching By matching By MS/MS 2 1 2 0.78853 0.77303 57.66 5 Median 0.60245 0.61521 32.295 2 0 Median 1.3466 1.2076 NaN 1 0 Median 0.51376 0.55982 89.447 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3414400 1719900 1694500 1219000 689800 529170 92143 39447 52696 2103300 990680 1112600 0 0 0 0 0 0 0 0 0 34232 4399 35988 179675;179676;179677;179678;179679 181690;181691 181690 2 TSPHGILDILVHER CSYFALWSLESVVSRTSPHGILDILVHERS RTSPHGILDILVHERSLNRGVPPSYPPPEQ R T S E R S 0 1 0 1 0 0 1 1 2 2 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1585.8576 Q8WYP5 Q8WYP5 440 453 AHCTF1 Protein ELYS yes yes 3 0.0029105 46.408 By MS/MS 1 1.1611 1.2858 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1611 1.2858 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3629500 1124000 2505400 0 0 0 0 0 0 3629500 1124000 2505400 0 0 0 0 0 0 0 0 0 34233 3524 35989 179680 181692 181692 1 TSPKPAVVETVTTAKPQQIQALMDEVTK QIESLRQRFGGGQAKTSPKPAVVETVTTAK AKPQQIQALMDEVTKQGNIVRELKAQKADK K T S T K Q 3 0 0 1 0 3 2 0 0 1 1 3 1 0 3 1 5 0 0 4 0 0 28 2 3009.6056 P56192;H0YIP0;H0YI94 P56192 824 851 MARS Methionine--tRNA ligase, cytoplasmic yes no 4 3.898E-05 29.736 By MS/MS 1 0.68779 0.67107 NaN 1 Median NaN NaN NaN 0 0 Median 0.68779 0.67107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2968000 1535600 1432400 0 0 0 2968000 1535600 1432400 0 0 0 0 0 0 0 0 0 0 0 0 34234 2508 35990 179681 181693;181694 181694 2 TSPVTASDPAGPSYAAATLQASSAASSASPVSR NSLRPGALFFSRINKTSPVTASDPAGPSYA LQASSAASSASPVSRAIGSTSKPQESPKGK K T S S R A 9 1 0 1 0 1 0 1 0 0 1 0 0 0 4 9 3 0 1 2 0 0 33 0 3062.4793 F5H8D7;P18887;M0QYS5;M0R1U8 F5H8D7 167 199 XRCC1 DNA repair protein XRCC1 yes no 3 1.0839E-08 51.566 By MS/MS 1 0.53705 0.54726 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53705 0.54726 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10743000 5391600 5351500 0 0 0 0 0 0 10743000 5391600 5351500 0 0 0 0 0 0 0 0 0 34235 1047 35991 179682 181695 181695 1 TSQDFLFSQLQYLPFSNK CACSDTSGPTMRYLRTSQDFLFSQLQYLPF DFLFSQLQYLPFSNKEYEISMLNQMSWLMK R T S N K E 0 0 1 1 0 3 0 0 0 0 3 1 0 3 1 3 1 0 1 0 0 0 18 0 2162.0684 Q92621;U3KQ97 Q92621 1086 1103 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.0031207 31.228 By matching By matching By MS/MS By matching 1 1 2 1 0.95805 0.96782 13.112 5 Median 1.0575 1.0325 NaN 1 0 Median 1.1171 0.96782 NaN 1 0 Median 0.77813 0.84791 19.208 2 0 Median 0.95805 0.86883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3033000 1606300 1426700 189620 94893 94723 511700 256120 255580 2269400 1224000 1045400 62290 31281 31009 0 0 0 0 0 0 34236 3547 35992 179683;179684;179685;179686;179687 181696;181697 181696 2 TSQDYQALTVHDNLAMK LVDLTRPSGLNPQAKTSQDYQALTVHDNLA QDYQALTVHDNLAMKICNEILTSPCSPEIR K T S M K I 2 0 1 2 0 2 0 0 1 0 2 1 1 0 0 1 2 0 1 1 0 0 17 0 1933.9204 Q9BPX3 Q9BPX3 817 833 NCAPG Condensin complex subunit 3 yes yes 3 6.485E-06 59.728 By MS/MS By MS/MS By matching 1 1 1 1.2242 1.0778 6.8544 3 Median 1.2242 1.1855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2015 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2897 1.0778 NaN 1 0 Median 15505000 7190600 8314600 10208000 4842400 5365700 0 0 0 0 0 0 4847600 2135800 2711800 0 0 0 449470 212400 237070 34237 3778 35993 179688;179689;179690 181698;181699;181700;181701 181700 4 TSQEELLAEVVQGQSR TVPQKQTLPVAPRTRTSQEELLAEVVQGQS SQEELLAEVVQGQSRTPRISPPIKEEETKG R T S S R T 1 1 0 0 0 3 3 1 0 0 2 0 0 0 0 2 1 0 0 2 0 0 16 0 1772.8905 Q6PJT7;H0YJA2;G3V256;G3V5I6;A0A087WTC9 Q6PJT7 389 404 ZC3H14 Zinc finger CCCH domain-containing protein 14 yes no 2 1.6856E-06 89.013 By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 1.1348 1.1553 100.61 6 Median 9.9992 11.273 NaN 1 0 Median 1.2874 1.164 NaN 1 0 Median 0.96115 1.0684 34.755 2 1 Median 0.86885 0.73551 NaN 1 0 Median 1.09 1.1466 NaN 1 0 Median NaN NaN NaN 0 0 Median 19343000 5076200 14267000 10943000 568890 10374000 418480 184900 233580 3397600 1773600 1623900 389180 234440 154750 4195600 2314300 1881300 0 0 0 34238 3175 35994 179691;179692;179693;179694;179695;179696 181702;181703;181704 181704 3 TSQLGDSPFYPGK FGTLSPSLGNSSILKTSQLGDSPFYPGKTT LKTSQLGDSPFYPGKTTYGGAAAAVRQSKL K T S G K T 0 0 0 1 0 1 0 2 0 0 1 1 0 1 2 2 1 0 1 0 0 0 13 0 1395.667 P49790 P49790 251 263 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.0017246 68.893 By MS/MS By MS/MS By matching 1 2 1 0.79254 0.78419 32.597 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65607 0.72308 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.97119 1.0757 42.991 2 0 Median 0.82993 0.77475 NaN 1 0 Median 24887000 14024000 10863000 0 0 0 0 0 0 17061000 9637500 7423500 0 0 0 7645500 4301300 3344200 180430 85561 94873 34239 2400 35995 179697;179698;179699;179700 181705;181706 181705 2 TSQLGSDHENTEEVSMR MTERFNLSVRQQVMKTSQLGSDHENTEEVS QLGSDHENTEEVSMRRAPLMWELIHKKVLS K T S M R R 0 1 1 1 0 1 3 1 1 0 1 0 1 0 0 3 2 0 0 1 0 0 17 0 1918.8327 A6NJ78 A6NJ78 353 369 METTL15 Probable methyltransferase-like protein 15 yes yes 3 0.057919 9.2834 By matching By matching By MS/MS By matching 1 1 1 1 1.1016 1.0726 34.49 4 Median 0.76175 0.77388 NaN 1 0 Median 1.3409 1.1758 NaN 1 0 Median 0.90502 0.97842 NaN 1 0 Median 1.9814 1.7509 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5528800 2303400 3225300 1463800 643110 820720 653330 248610 404720 1827400 996590 830810 1584200 415130 1169100 0 0 0 0 0 0 34240 522 35996 179701;179702;179703;179704 181707 181707 1 TSQLNVGTSTDVSLK GSPFTAKITGDDSMRTSQLNVGTSTDVSLK TSQLNVGTSTDVSLKITESDLSQLTASIRA R T S L K I 0 0 1 1 0 1 0 1 0 0 2 1 0 0 0 3 3 0 0 2 0 0 15 0 1548.7995 Q14315 Q14315 1954 1968 FLNC Filamin-C yes yes 2 3.0972E-21 193.23 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 1.2017 1.1795 28.644 9 Median 1.4593 1.4654 21.977 3 0 Median 1.0513 0.93998 7.8227 3 0 Median 1.0667 1.1814 NaN 1 1 Median 1.0434 0.9545 29.938 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128990000 56981000 72010000 67575000 26995000 40579000 51327000 24872000 26454000 8624100 4431900 4192200 1466300 681730 784600 0 0 0 0 0 0 34241 2871 35997 179705;179706;179707;179708;179709;179710;179711;179712;179713 181708;181709;181710;181711;181712;181713;181714;181715;181716;181717;181718;181719;181720;181721;181722;181723 181716 16 TSQNDAYLNSPSLNFVTDNQTLPNQPAFSSIDK MLQEYSKFLQQALDRTSQNDAYLNSPSLNF NQTLPNQPAFSSIDKQVYATMPINSFRSGM R T S D K Q 2 0 5 3 0 3 0 0 0 1 3 1 0 2 3 5 3 0 1 1 0 0 33 0 3625.7172 Q9UQR1 Q9UQR1 616 648 ZNF148 Zinc finger protein 148 yes yes 3 0.026479 19.903 By MS/MS 1 0.51006 0.55828 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51006 0.55828 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2973600 2335300 638240 0 0 0 0 0 0 2973600 2335300 638240 0 0 0 0 0 0 0 0 0 34242 4364 35998 179714 181724 181724 1 TSQNSELNNMQDLVEDYK IDSLKRYLDGLTAERTSQNSELNNMQDLVE NSELNNMQDLVEDYKKKYEDEINKRTAAEN R T S Y K K 0 0 3 2 0 2 2 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 18 0 2126.9426 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 271 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 4.5389E-08 71.548 By MS/MS 2 0.13671 0.12895 NaN 1 Median 0.13671 0.12895 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7482900 7315100 167790 7482900 7315100 167790 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 34243 764;765 35999 179715;179716 181725;181726 181725 2 TSQNSELNNMQDLVEDYKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE SELNNMQDLVEDYKKKYEDEINKRTAAEND R T S K K K 0 0 3 2 0 2 2 0 0 0 2 2 1 0 0 2 1 0 1 1 0 0 19 1 2255.0376 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 272 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 2.8049E-47 154.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 3 12 11 10 1 0.060298 0.063926 121.32 43 Median 0.05046 0.048687 134.59 13 13 Median 0.096229 0.091926 32.883 2 2 Median 0.074532 0.082349 147.8 11 11 Median 0.065312 0.060136 100.13 8 8 Median 0.072429 0.079727 118.7 8 8 Median 0.12237 0.1092 NaN 1 1 Median 1246300000 1146100000 100200000 571540000 545060000 26478000 38361000 37109000 1252200 339980000 279910000 60072000 52615000 50184000 2430900 241590000 231690000 9898300 2178500 2107000 71488 + 34244 764;765 36000;36001 179717;179718;179719;179720;179721;179722;179723;179724;179725;179726;179727;179728;179729;179730;179731;179732;179733;179734;179735;179736;179737;179738;179739;179740;179741;179742;179743;179744;179745;179746;179747;179748;179749;179750;179751;179752;179753;179754;179755;179756;179757;179758;179759;179760;179761;179762;179763;179764;179765;179766;179767;179768;179769 181727;181728;181729;181730;181731;181732;181733;181734;181735;181736;181737;181738;181739;181740;181741;181742;181743;181744;181745;181746;181747;181748;181749;181750;181751;181752;181753;181754;181755;181756;181757;181758;181759;181760;181761;181762;181763;181764;181765;181766;181767;181768;181769;181770;181771;181772;181773;181774;181775;181776;181777;181778;181779;181780;181781;181782;181783;181784;181785;181786;181787;181788;181789;181790;181791 181781 287 65 TSQNSELNNMQDLVEDYKKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE ELNNMQDLVEDYKKKYEDEINKRTAAENDF R T S K K Y 0 0 3 2 0 2 2 0 0 0 2 3 1 0 0 2 1 0 1 1 0 0 20 2 2383.1326 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 273 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 1.8531E-14 86.96 By MS/MS By MS/MS 2 1 0.24169 0.28549 43.126 3 Median 0.18003 0.21265 41.656 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3247 0.36696 NaN 1 1 Median NaN NaN NaN 0 0 Median 32700000 27637000 5062200 29711000 25408000 4303300 0 0 0 0 0 0 0 0 0 2988600 2229700 758870 0 0 0 + 34245 764;765 36002 179770;179771;179772 181792;181793;181794 181792 3 TSQPMAPGVFLTQR EYTAAGTFTGAQAGRTSQPMAPGVFLTQRR RTSQPMAPGVFLTQRRPSASSPNNNTAAKG R T S Q R R 1 1 0 0 0 2 0 1 0 0 1 0 1 1 2 1 2 0 0 1 0 0 14 0 1531.7817 O75151;E7ET14;A0A087WW48 O75151 1040 1053 PHF2 Lysine-specific demethylase PHF2 yes no 2 0.00070169 63.408 By MS/MS By matching 1 1 0.88493 0.87509 22.606 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67801 0.74582 NaN 1 0 Median 1.155 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5069300 2897200 2172100 0 0 0 0 0 0 4926500 2832900 2093600 142830 64331 78499 0 0 0 0 0 0 34246 1649 36003 179773;179774 181795 181795 1 TSQPPVPQGEAEEDSQGK VRFRISNSSTANRVKTSQPPVPQGEAEEDS PPVPQGEAEEDSQGKEGPSGSGDSQLSASS K T S G K E 1 0 0 1 0 3 3 2 0 0 0 1 0 0 3 2 1 0 0 1 0 0 18 0 1882.8545 Q12789 Q12789 725 742 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 1.1433E-05 52.555 By MS/MS By matching 1 1 0.62881 0.63022 17.956 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49812 0.55507 NaN 1 0 Median 0.79378 0.71554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4520000 2867800 1652200 0 0 0 0 0 0 4116500 2662700 1453900 403450 205140 198310 0 0 0 0 0 0 34247 2758 36004 179775;179776 181796;181797 181796 2 TSQSWVER SNVLQMQCKLFVFDKTSQSWVERGRGLLRL KLFVFDKTSQSWVERGRGLLRLNDMASTDD K T S E R G 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 2 1 1 0 1 0 0 8 0 991.47231 B7Z7F3;Q9H6Z4;K7EIJ4 B7Z7F3 341 348 RANBP3 Ran-binding protein 3 yes no 2 0.0049216 78.77 By MS/MS By MS/MS 1 1 0.90929 0.85258 24.158 2 Median 0.70885 0.71871 NaN 1 1 Median 1.1664 1.0114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4250500 2058600 2192000 1550100 842750 707380 2700400 1215800 1484600 0 0 0 0 0 0 0 0 0 0 0 0 34248 636 36005 179777;179778 181798;181799 181799 2 TSQTSLTASINK FQDSEFSSSQGEDEKTSQTSLTASINKLES DEKTSQTSLTASINKLESTARPSESSEEFL K T S N K L 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 3 3 0 0 0 0 0 12 0 1249.6514 D6RB01;Q9Y6X4 D6RB01 297 308 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 0.0052277 41.54 By MS/MS 1 0.75134 0.82097 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75134 0.82097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2908300 1601400 1306900 0 0 0 0 0 0 2908300 1601400 1306900 0 0 0 0 0 0 0 0 0 34249 814 36006 179779 181800;181801 181801 2 TSQTVATFLDELAQK FHTHADYVLEMNMAKTSQTVATFLDELAQK TSQTVATFLDELAQKLKPLGEQERAVILEL K T S Q K L 2 0 0 1 0 2 1 0 0 0 2 1 0 1 0 1 3 0 0 1 0 0 15 0 1650.8465 P52888;K7EP46 P52888 287 301 THOP1 Thimet oligopeptidase yes no 2 4.6488E-10 108.56 By matching By MS/MS 1 1 1.081 0.97291 1.94 2 Median 1.064 0.98635 NaN 1 0 Median 1.0983 0.95966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15226000 7273300 7952300 6333000 3030200 3302900 8892600 4243200 4649400 0 0 0 0 0 0 0 0 0 0 0 0 34250 2460 36007 179780;179781 181802;181803 181802 2 TSRPENAIIYNNNEDFQVGQAK AVELAANTKGICFIRTSRPENAIIYNNNED IIYNNNEDFQVGQAKVVLKSKDDQVTVIGA R T S A K V 2 1 4 1 0 2 2 1 0 2 0 1 0 1 1 1 1 0 1 1 0 0 22 1 2507.2041 P29401;A0A0B4J1R6 P29401 472 493 TKT Transketolase yes no 2;3 1.1618E-123 265.43 By MS/MS By MS/MS By MS/MS By MS/MS 8 6 1 3 0.82534 0.82718 16.524 17 Median 0.79251 0.79079 10.477 7 0 Median 0.85029 0.81797 8.0479 6 0 Median 0.81415 0.86777 NaN 1 0 Median 1.0324 0.91393 29.66 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 673910000 353530000 320380000 526290000 279870000 246420000 51655000 25568000 26087000 80528000 40609000 39919000 15437000 7481300 7956200 0 0 0 0 0 0 34251 2173 36008 179782;179783;179784;179785;179786;179787;179788;179789;179790;179791;179792;179793;179794;179795;179796;179797;179798;179799 181804;181805;181806;181807;181808;181809;181810;181811;181812;181813;181814;181815;181816;181817;181818;181819;181820;181821;181822;181823;181824;181825;181826;181827 181812 24 TSSAETPTIPLGSAVEAIK HQLWLSVEALKYSMKTSSAETPTIPLGSAV ETPTIPLGSAVEAIKANCSDNEFTQALTAA K T S I K A 3 0 0 0 0 0 2 1 0 2 1 1 0 0 2 3 3 0 0 1 0 0 19 0 1870.9888 Q16891;B9A067;C9J406;H7C463 Q16891 582 600 IMMT MICOS complex subunit MIC60 yes no 2 2.5519E-13 106.58 By MS/MS By matching By matching By MS/MS By matching 1 1 1 1 2 0.95258 0.88769 17.58 6 Median 0.71353 0.6365 NaN 1 0 Median 1.084 0.94955 NaN 1 0 Median 0.99441 1.0344 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93684 0.9665 NaN 1 0 Median 0.94491 0.81499 2.5585 2 0 Median 29995000 16563000 13432000 22223000 12610000 9613600 3918900 1869300 2049600 1188000 613300 574750 0 0 0 2274100 1264000 1010100 390690 207120 183560 34252 3001 36009 179800;179801;179802;179803;179804;179805 181828;181829;181830;181831 181829 4 TSSAQVEGGVHSLHSYEK VRAMMYSGELKFEKRTSSAQVEGGVHSLHS AQVEGGVHSLHSYEKRLF____________ R T S E K R 1 0 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 18 0 1914.9072 P12268;H0Y4R1 P12268 494 511 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 3;4 1.7595E-11 100.04 By MS/MS By MS/MS By MS/MS 5 4 2 1.2772 1.1351 10.69 11 Median 1.1467 1.0737 11.666 5 0 Median 1.3436 1.1356 7.2237 4 0 Median NaN NaN NaN 0 0 Median 1.4689 1.2602 2.8714 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 97189000 44348000 52841000 57199000 26668000 30531000 31257000 14356000 16901000 0 0 0 8733400 3324500 5408900 0 0 0 0 0 0 34253 1148 36010 179806;179807;179808;179809;179810;179811;179812;179813;179814;179815;179816 181832;181833;181834;181835;181836;181837;181838;181839;181840;181841;181842;181843;181844 181844 13 TSSGDASSLSIEETNK REKRDDGYEAAASSKTSSGDASSLSIEETN SSGDASSLSIEETNKLRAKLGLKPLEVNAI K T S N K L 1 0 1 1 0 0 2 1 0 1 1 1 0 0 0 5 2 0 0 0 0 0 16 0 1624.7428 O43290;E9PQI8 O43290 110 125 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes no 2 9.4268E-09 153.63 By matching By MS/MS By MS/MS 1 1 2 1.3016 1.1844 4.5912 4 Median NaN NaN NaN 0 0 Median 1.2607 1.1038 NaN 1 0 Median 1.0887 1.2019 NaN 1 0 Median 1.3813 1.1966 3.5315 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13779000 5869600 7909100 0 0 0 2459200 957280 1501900 4841600 2168400 2673300 6477900 2744000 3733900 0 0 0 0 0 0 34254 1563 36011 179817;179818;179819;179820 181845;181846;181847;181848;181849 181848 5 TSSGLGGSTTDFLEEWK ______________________________ SGLGGSTTDFLEEWKAKREKMRAKQNPPGP R T S W K A 0 0 0 1 0 0 2 3 0 0 2 1 0 1 0 3 3 1 0 0 0 0 17 0 1813.837 Q96IZ0;A0A0B4J260;F8W1M8 Q96IZ0 8 24 PAWR PRKC apoptosis WT1 regulator protein yes no 2 2.6763E-05 57.019 By MS/MS By matching 2 2 0.91532 0.86539 13.69 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91604 0.94702 4.3151 2 0 Median 0.88583 0.76423 9.1486 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7213300 3939000 3274300 0 0 0 0 0 0 6529300 3580300 2949000 683950 358670 325270 0 0 0 0 0 0 34255 3681 36012 179821;179822;179823;179824 181850;181851;181852 181851 3 TSSLAPVVGTTTTTPSPSAIK GSPDTKPSRLASKTKTSSLAPVVGTTTTTP VVGTTTTTPSPSAIKAAAKSAALQVTKQIT K T S I K A 2 0 0 0 0 0 0 1 0 1 1 1 0 0 3 4 6 0 0 2 0 0 21 0 2015.0787 Q92733 Q92733 226 246 PRCC Proline-rich protein PRCC yes yes 2 4.2863E-25 132.86 By MS/MS By MS/MS 2 1 0.58615 0.60762 9.5081 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57862 0.58294 5.8661 2 0 Median 0.79259 0.67605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18017000 11020000 6997500 0 0 0 0 0 0 15910000 9846000 6063800 2107700 1173900 933720 0 0 0 0 0 0 34256 3550 36013 179825;179826;179827 181853;181854;181855;181856;181857;181858 181855 6 TSSLPNHSEPDHDTDAGLER VLSEIKRLGDHLAEKTSSLPNHSEPDHDTD NHSEPDHDTDAGLERTNPEYENEVEASMDM K T S E R T 1 1 1 3 0 0 2 1 2 0 2 0 0 0 2 3 2 0 0 0 0 0 20 0 2176.9621 Q69YN4 Q69YN4 577 596 KIAA1429 Protein virilizer homolog yes yes 3;4 1.6898E-07 55.763 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.78582 0.71665 14.572 6 Median NaN NaN NaN 0 0 Median 0.85594 0.71908 NaN 1 0 Median 0.65757 0.71798 0.74356 2 0 Median 0.78582 0.69026 4.1802 2 0 Median 0.95868 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median 30554000 17412000 13142000 0 0 0 1070300 465200 605080 22452000 13035000 9416600 5004500 2712200 2292300 2027500 1199300 828180 0 0 0 34257 3130 36014 179828;179829;179830;179831;179832;179833 181859;181860;181861;181862;181863;181864;181865;181866;181867 181860 9 TSSQLVTMHDLK KRSTYNYSLPITVKKTSSQLVTMHDLKQGL VKKTSSQLVTMHDLKQGLGPSGTSGARKPA K T S L K Q 0 0 0 1 0 1 0 0 1 0 2 1 1 0 0 2 2 0 0 1 0 0 12 0 1358.6864 Q9Y5Q8;Q5T7U1;H7BY84;H0Y5D2 Q9Y5Q8 356 367 GTF3C5 General transcription factor 3C polypeptide 5 yes no 2;3 0.023831 49.3 By MS/MS 2 1.5425 1.5788 36.79 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5425 1.5788 36.79 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6094100 2157000 3937100 0 0 0 0 0 0 6094100 2157000 3937100 0 0 0 0 0 0 0 0 0 34258 4466 36015 179834;179835 181868;181869 181868 2 TSSSFAAAMAR KGKVMASMFYEVSTRTSSSFAAAMARLGGA VSTRTSSSFAAAMARLGGAVLSFSEATSSV R T S A R L 4 1 0 0 0 0 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 11 0 1098.5128 F8VPD4;P27708;H7C2E4 F8VPD4 1913 1923 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.00013635 85.731 By matching By MS/MS 1 1 1.1221 1.0169 15.027 2 Median 1.1761 1.1309 NaN 1 0 Median 1.0707 0.9144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10860000 5274000 5585500 4406600 1789200 2617500 6452900 3484800 2968100 0 0 0 0 0 0 0 0 0 0 0 0 34259 1057 36016 179836;179837 181870;181871 181870 2 TSSVLGMSVESAPAVEEEKGEELEQK GSISQVIEQLPQPNRTSSVLGMSVESAPAV APAVEEEKGEELEQKEKEKEEDTSGNTTHS R T S Q K E 2 0 0 0 0 1 7 2 0 0 2 2 1 0 1 4 1 0 0 3 0 0 26 1 2762.3168 A6NNK5;Q12888;C9JXV0 A6NNK5 122 147 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 3 1.5863E-06 38.629 By MS/MS By matching 1 1 0.75451 0.78283 26.383 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56186 0.6496 NaN 1 0 Median 1.0132 0.94339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8516600 5101400 3415200 0 0 0 0 0 0 8019700 4861700 3158100 496910 239760 257160 0 0 0 0 0 0 34260 530 36017 179838;179839 181872 181872 1 TSSVLGMSVESAPAVEEEKGEELEQKEK GSISQVIEQLPQPNRTSSVLGMSVESAPAV AVEEEKGEELEQKEKEKEEDTSGNTTHSLG R T S E K E 2 0 0 0 0 1 8 2 0 0 2 3 1 0 1 4 1 0 0 3 0 0 28 2 3019.4543 A6NNK5;Q12888;C9JXV0 A6NNK5 122 149 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 4 4.3138E-06 37.908 By MS/MS 1 0.49757 0.57647 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49757 0.57647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7249400 4459900 2789500 0 0 0 0 0 0 7249400 4459900 2789500 0 0 0 0 0 0 0 0 0 34261 530 36018 179840 181873 181873 1 TSSVPEYVYNLHLVENDFVGGR ARKGRSSVGNGNLHRTSSVPEYVYNLHLVE VYNLHLVENDFVGGRSPVPKTYDMLKAGTT R T S G R S 0 1 2 1 0 0 2 2 1 0 2 0 0 1 1 2 1 0 2 4 0 0 22 0 2494.2129 Q99959 Q99959 80 101 PKP2 Plakophilin-2 yes yes 3 1.5112E-12 72.876 By MS/MS By MS/MS 1 1 0.58451 0.61664 36.183 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74345 0.79643 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45954 0.47744 NaN 1 0 Median NaN NaN NaN 0 0 Median 7483200 4733700 2749500 0 0 0 0 0 0 1657300 922430 734830 0 0 0 5825900 3811300 2014700 0 0 0 34262 3773 36019 179841;179842 181874;181875;181876 181875 3 TSSVVTLEVAK LVGLSQERAAELMTRTSSVVTLEVAKQGAI LMTRTSSVVTLEVAKQGAIYHGLATLLNQP R T S A K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 2 0 0 3 0 0 11 0 1132.634 J3KN01;P55196;Q5TIG5;A8MQ02 J3KN01 1088 1098 MLLT4 Afadin yes no 2 0.018728 35.541 By MS/MS By matching 1 2 0.99109 0.90079 49.726 3 Median NaN NaN NaN 0 0 Median 0.97161 0.86078 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5014 1.3694 59.232 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968700 1754900 2213700 0 0 0 2398900 1099500 1299400 0 0 0 1569700 655420 914310 0 0 0 0 0 0 34263 1300 36020 179843;179844;179845 181877 181877 1 TSTILAAAR DLPNLLFYGPPGTGKTSTILAAARELFGPE PPGTGKTSTILAAARELFGPELFRLRVLEL K T S A R E 3 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 2 0 0 0 0 0 9 0 902.51853 P35249;C9JZI1;C9J8M3;C9JTT7;C9JXZ7;C9JGY5;F8WE44 P35249 85 93 RFC4 Replication factor C subunit 4 yes no 2 0.0011629 84.568 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.3364 1.1326 12.256 6 Median 1.0466 1.0552 NaN 1 0 Median 1.3677 1.1732 NaN 1 0 Median 1.0398 1.0284 NaN 1 0 Median 1.3668 1.1604 8.4112 2 0 Median NaN NaN NaN 0 0 Median 1.7511 1.4322 NaN 1 0 Median 16450000 7450400 8999600 2001200 1025100 976100 2128400 989220 1139200 4046900 2010100 2036800 4510400 1843500 2667000 0 0 0 3763100 1582500 2180600 34264 2237 36021 179846;179847;179848;179849;179850;179851 181878;181879;181880 181879 3 TSTIQYLAHITGHR KGEPVLLVGETGTGKTSTIQYLAHITGHRL KTSTIQYLAHITGHRLRVVNMNQQSDTADL K T S H R L 1 1 0 0 0 1 0 1 2 2 1 0 0 0 0 1 3 0 1 0 0 0 14 0 1596.8372 Q9NU22;Q5T795 Q9NU22 684 697 MDN1 Midasin yes no 2 0.00045292 68.069 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34265 4112 36022 179852 181881 181881 1 TSTMQDETLNSSVQSIR VVQPVQAVPEGEAARTSTMQDETLNSSVQS TMQDETLNSSVQSIRTIQAPTQVPVVVSPR R T S I R T 0 1 1 1 0 2 1 0 0 1 1 0 1 0 0 4 3 0 0 1 0 0 17 0 1895.8895 A0A0U1RRL5;P32519 A0A0U1RRL5 403 419 ELF1 ETS-related transcription factor Elf-1 yes no 2 1.4576E-07 75.78 By MS/MS 1 0.87238 0.92372 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87238 0.92372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3321100 1625900 1695100 0 0 0 0 0 0 3321100 1625900 1695100 0 0 0 0 0 0 0 0 0 34266 310 36023 179853 181882 181882 1 TSTPEDFIR RQELAVFCSPEPPAKTSTPEDFIRMTKGIT PEPPAKTSTPEDFIRMTKGITMATAKAVAA K T S I R M 0 1 0 1 0 0 1 0 0 1 0 0 0 1 1 1 2 0 0 0 0 0 9 0 1064.5138 Q9Y490 Q9Y490 2169 2177 TLN1 Talin-1 yes yes 2 0.0027536 69.825 By MS/MS By MS/MS By MS/MS 1 1 2 0.9973 0.86019 11.583 4 Median NaN NaN NaN 0 0 Median 0.97636 0.83286 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.01 0.88842 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1268 0.93541 17.646 2 0 Median 6785600 3308300 3477300 0 0 0 4025800 1985600 2040200 0 0 0 1250000 611010 638970 0 0 0 1509800 711670 798180 34267 4441 36024 179854;179855;179856;179857 181883;181884;181885;181886 181883 4 TSTPVIMEGVQEETDTR ENKNESKLEREHKRRTSTPVIMEGVQEETD TPVIMEGVQEETDTRDVKRQVERSEICTEE R T S T R D 0 1 0 1 0 1 3 1 0 1 0 0 1 0 1 1 4 0 0 2 0 0 17 0 1891.8833 Q8NFC6 Q8NFC6 658 674 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.014948 41.052 By MS/MS 1 6.6124 7.1405 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6.6124 7.1405 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4483100 833830 3649200 0 0 0 0 0 0 4483100 833830 3649200 0 0 0 0 0 0 0 0 0 34268 3434 36025 179858 181887 181887 1 TSTSAVPNLFVPLNTNPK SPKSKTKWTKEDGHRTSTSAVPNLFVPLNT SAVPNLFVPLNTNPKEVQEMRNKIREQNLQ R T S P K E 1 0 3 0 0 0 0 0 0 0 2 1 0 1 3 2 3 0 0 2 0 0 18 0 1899.0102 E7EV99;E7ENY0;P35611;H0Y9H2 E7EV99 480 497 ADD1 Alpha-adducin yes no 2 1.1889E-05 51.841 By matching By MS/MS By matching By matching 1 2 2 1 0.59785 0.57995 17.252 6 Median NaN NaN NaN 0 0 Median 0.8847 0.79767 NaN 1 0 Median 0.50103 0.53827 4.3047 2 0 Median 0.72513 0.62888 5.2099 2 0 Median 0.48296 0.49726 NaN 1 0 Median NaN NaN NaN 0 0 Median 22034000 14182000 7851500 0 0 0 464720 285950 178770 18173000 11630000 6543500 1574800 940370 634420 1821000 1326300 494790 0 0 0 34269 866 36026 179859;179860;179861;179862;179863;179864 181888;181889 181889 2 TSTSNVEQYQAMVTSLEESLNKEK RQTEEQVNDLKERLKTSTSNVEQYQAMVTS QAMVTSLEESLNKEKQVTEEVRKNIEVRLK K T S E K Q 1 0 2 0 0 2 4 0 0 0 2 2 1 0 0 4 3 0 1 2 0 0 24 1 2715.2909 P12270 P12270 957 980 TPR Nucleoprotein TPR yes yes 3 0.072136 6.7984 By MS/MS 1 0.98714 1.136 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98714 1.136 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3181300 1604100 1577200 0 0 0 0 0 0 3181300 1604100 1577200 0 0 0 0 0 0 0 0 0 34270 1978 36027 179865 181890;181891 181891 2 TSTTAEKTDEEEKEDR IKEEKVKADTNGIIKTSTTAEKTDEEEKED STTAEKTDEEEKEDRAAQSLLNKLIRSNLV K T S D R A 1 1 0 2 0 0 5 0 0 0 0 2 0 0 0 1 4 0 0 0 0 0 16 2 1867.8283 Q9NUU7;I3L0H8;H3BTB3 Q9NUU7 40 55 DDX19A ATP-dependent RNA helicase DDX19A yes no 3;4 0.0071016 25.59 By matching By MS/MS By MS/MS By matching By matching 2 1 2 1 2 1.0945 1.2593 21.679 8 Median 1.0156 1.1348 8.7295 2 0 Median 1.109 1.1364 NaN 1 0 Median 1.0331 1.2704 0.45631 2 0 Median 1.1767 1.2524 NaN 1 0 Median 1.6327 1.8677 9.0177 2 0 Median NaN NaN NaN 0 0 Median 4516200 2082300 2434000 944540 438260 506280 992950 420300 572650 1902900 911770 991150 331690 160110 171580 344140 151830 192300 0 0 0 34271 4121 36028 179866;179867;179868;179869;179870;179871;179872;179873 181892;181893 181893 2 TSTTSSMVASAEQPR STASHRPIKGILKNKTSTTSSMVASAEQPR TSTTSSMVASAEQPRGNVDEELSKKSQKWD K T S P R G 2 1 0 0 0 1 1 0 0 0 0 0 1 0 1 4 3 0 0 1 0 0 15 0 1551.7199 E7EMN6;Q6NXS1;P41236;E7EUI7 E7EMN6 19 33 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 yes no 2 0.051578 67.456 By MS/MS By matching 1 1 1.0358 0.92347 30.913 2 Median 1.2241 1.1491 NaN 1 0 Median 0.87648 0.74215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7462100 3510600 3951500 6179100 2903300 3275800 1283000 607300 675710 0 0 0 0 0 0 0 0 0 0 0 0 34272 857 36029 179874;179875 181894 181894 0 TSTVDLPIENQLLWQIDR KKMDQPPQAKKAKVKTSTVDLPIENQLLWQ VDLPIENQLLWQIDREMLNLYIENEGKMIM K T S D R E 0 1 1 2 0 2 1 0 0 2 3 0 0 0 1 1 2 1 0 1 0 0 18 0 2140.1164 P34932 P34932 574 591 HSPA4 Heat shock 70 kDa protein 4 yes yes 3 0.022605 15.592 By MS/MS By matching 1 1 0.96653 0.99299 1.568 2 Median 0.97078 0.98204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96231 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1251200 618580 632590 897120 447830 449290 0 0 0 354050 170750 183300 0 0 0 0 0 0 0 0 0 34273 2230 36030 179876;179877 181895 181895 1 TSTVINWFHNYR SPKTIEDLATQLNLKTSTVINWFHNYRSRI NLKTSTVINWFHNYRSRIRRELFIEEIQAG K T S Y R S 0 1 2 0 0 0 0 0 1 1 0 0 0 1 0 1 2 1 1 1 0 0 12 0 1536.7474 A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 1240 1251 no no 3 0.0022449 38.021 By MS/MS By matching 2 1 1.0016 1.1054 91.352 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9023 2.1345 93.057 2 0 Median 0.81332 0.71224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5906900 2971100 2935800 0 0 0 0 0 0 5646000 2845800 2800200 260930 125270 135650 0 0 0 0 0 0 34274 388 36031 179878;179879;179880 181896;181897 181897 2 TSVATSTEGKDKDVTLSPVK GQTEDVATGPRRAEKTSVATSTEGKDKDVT STEGKDKDVTLSPVKAGPATTTSSETRQSE K T S V K A 1 0 0 2 0 0 1 1 0 0 1 3 0 0 1 3 4 0 0 3 0 0 20 2 2062.0794 Q8NFC6 Q8NFC6 1515 1534 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 0.00033216 33.405 By MS/MS 2 0.71349 0.85573 14.943 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71349 0.85573 14.943 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6894600 4077000 2817600 0 0 0 0 0 0 6894600 4077000 2817600 0 0 0 0 0 0 0 0 0 34275 3434 36032 179881;179882 181898;181899 181899 2 TSVDAAEDYAEGVR TEDGLPLGVNLGKNKTSVDAAEDYAEGVRV KTSVDAAEDYAEGVRVLGPLADYLVVNVSS K T S V R V 3 1 0 2 0 0 2 1 0 0 0 0 0 0 0 1 1 0 1 2 0 0 14 0 1481.6634 Q02127;I3NI32 Q02127 186 199 DHODH Dihydroorotate dehydrogenase (quinone), mitochondrial yes no 2 0.002275 58.676 By MS/MS 1 1.1349 1.1418 NaN 1 Median 1.1349 1.1418 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2191900 1008900 1183000 2191900 1008900 1183000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34276 2696 36033 179883 181900 181900 1 TSVETALR DPRPCEVENAVESWRTSVETALRAYVKEHY NAVESWRTSVETALRAYVKEHYPNGVCTVY R T S L R A 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 8 0 875.47125 P47755;C9JUG7;F8W9N7;A0A0D9SET8 P47755 122 129 CAPZA2 F-actin-capping protein subunit alpha-2 yes no 2 0.0023383 114.78 By MS/MS By MS/MS By MS/MS 1 1 1 1.2186 1.0162 16.717 3 Median 1.4403 1.347 NaN 1 0 Median 1.2038 1.0012 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2186 1.0162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20356000 8547900 11808000 10754000 4392000 6362400 7228800 3102800 4126000 0 0 0 2373000 1053100 1319800 0 0 0 0 0 0 34277 2354 36034 179884;179885;179886 181901;181902;181903;181904;181905 181902 5 TSVFTPAYGSVTNVR RRHRFSINGHFYNHKTSVFTPAYGSVTNVR TSVFTPAYGSVTNVRVNSTMTTLQVLTLLL K T S V R V 1 1 1 0 0 0 0 1 0 0 0 0 0 1 1 2 3 0 1 3 0 0 15 0 1597.81 Q9H2L5;P50749 Q9H2L5 178 192 RASSF4;RASSF2 Ras association domain-containing protein 4;Ras association domain-containing protein 2 yes no 2 0.00037579 61.435 By MS/MS 1 0.79492 0.7905 NaN 1 Median 0.79492 0.7905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4006100 2230100 1776000 4006100 2230100 1776000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34278 2421 36035 179887 181906;181907 181906 2 TSVIQGIHTDHNTLK EELMKIGSDVELLLRTSVIQGIHTDHNTLK TSVIQGIHTDHNTLKLVPRKDLLVENVPYC R T S L K L 0 0 1 1 0 1 0 1 2 2 1 1 0 0 0 1 3 0 0 1 0 0 15 0 1662.8689 Q5U5X0 Q5U5X0 68 82 LYRM7 Complex III assembly factor LYRM7 yes yes 2;3;4 1.9527E-26 196.24 By MS/MS By MS/MS By matching 3 3 1 1.328 1.1045 40.144 7 Median 0.98354 0.88936 12.553 3 0 Median 1.4433 1.1865 14.147 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6678 2.8479 NaN 1 0 Median NaN NaN NaN 0 0 Median 191840000 86530000 105310000 47226000 24242000 22985000 144220000 62172000 82051000 0 0 0 0 0 0 386210 116680 269530 0 0 0 34279 3108 36036 179888;179889;179890;179891;179892;179893;179894 181908;181909;181910;181911;181912;181913;181914 181914 7 TSVLAAANPIESQWNPK LSIAKAGIICQLNARTSVLAAANPIESQWN VLAAANPIESQWNPKKTTIENIQLPHTLLS R T S P K K 3 0 2 0 0 1 1 0 0 1 1 1 0 0 2 2 1 1 0 1 0 0 17 0 1824.937 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 561 577 MCM4 DNA replication licensing factor MCM4 yes no 2 3.5914E-13 156.69 By MS/MS By matching By MS/MS By matching 2 2 2 1 0.79727 0.7013 28.037 7 Median 0.82871 0.78269 35.207 2 1 Median 0.82569 0.72854 5.3895 2 0 Median 0.9025 0.96689 48.413 2 0 Median NaN NaN NaN 0 0 Median 0.67376 0.69416 NaN 1 0 Median NaN NaN NaN 0 0 Median 54139000 31002000 23138000 24237000 13721000 10515000 3537200 1853100 1684100 24403000 14326000 10077000 0 0 0 1962800 1101200 861530 0 0 0 34280 441 36037 179895;179896;179897;179898;179899;179900;179901 181915;181916;181917;181918;181919 181916 5 TSVLEMIAQAR HLPRVVVVGDQSAGKTSVLEMIAQARIFPR SAGKTSVLEMIAQARIFPRGSGEMMTRSPV K T S A R I 2 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 0 1 0 0 11 0 1217.6438 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4;A0A2R8YE54 A0A2R8Y3X5 196 206 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.0001696 79.906 By MS/MS 2 1.1075 1.0923 10.594 2 Median 1.1075 1.0923 10.594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4598300 1991300 2607100 4598300 1991300 2607100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34281 357 36038 179902;179903 181920;181921;181922;181923 181923 4 TSVQFQNFSPTVVHPGDLQTQLAVQTK FRQNLGRMYLFYGNKTSVQFQNFSPTVVHP VHPGDLQTQLAVQTKRVAAQVDGGAQVQQV K T S T K R 1 0 1 1 0 5 0 1 1 0 2 1 0 2 2 2 4 0 0 4 0 0 27 0 2969.5247 O95782 O95782 784 810 AP2A1 AP-2 complex subunit alpha-1 yes yes 3 0.011405 17.341 By MS/MS By matching 1 1 0.78431 0.80892 3.9792 2 Median 0.8043 0.78648 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76483 0.83201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7315100 4118300 3196800 4571300 2454500 2116700 0 0 0 2743900 1663800 1080100 0 0 0 0 0 0 0 0 0 34282 1793 36039 179904;179905 181924 181924 1 TSVQPTFTASQYR EYDLQQREAATKSSRTSVQPTFTASQYRAL SRTSVQPTFTASQYRALSVLGCGHTSSTKC R T S Y R A 1 1 0 0 0 2 0 0 0 0 0 0 0 1 1 2 3 0 1 1 0 0 13 0 1484.726 Q5T4S7 Q5T4S7 3845 3857 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 3.21E-15 185.08 By MS/MS By MS/MS 1 2 0.85302 0.76561 10.758 3 Median 0.85302 0.83617 NaN 1 0 Median 0.8784 0.7189 8.9018 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30436000 15928000 14507000 11171000 5671400 5499600 19265000 10257000 9007700 0 0 0 0 0 0 0 0 0 0 0 0 34283 3089 36040 179906;179907;179908 181925;181926 181925 2 TSVQTEDDQLIAGQSAR DDSDFETEDFDVRSRTSVQTEDDQLIAGQS VQTEDDQLIAGQSARAIMAQLPQEQKAKIA R T S A R A 2 1 0 2 0 3 1 1 0 1 1 0 0 0 0 2 2 0 0 1 0 0 17 0 1817.8755 P35221;G3XAM7;P26232;A0A0A0MTJ6;A0A0A0MRI5 P35221 654 670 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 no no 2 2.9902E-24 188.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 1 0.96823 0.89403 18.011 8 Median 0.96369 0.92828 NaN 1 0 Median 1.1679 1.0089 15.412 2 0 Median 0.8333 0.88343 NaN 1 0 Median 1.0401 0.88959 8.4268 2 0 Median 0.82465 0.86193 NaN 1 0 Median 0.7285 0.59301 NaN 1 0 Median 46910000 23764000 23146000 12785000 6343400 6441400 5602900 2700700 2902300 15586000 7938100 7647900 6956900 3512000 3445000 4970100 2761000 2209100 1009400 508880 500480 34284 2232;2141 36041 179909;179910;179911;179912;179913;179914;179915;179916 181927;181928;181929;181930;181931;181932;181933;181934 181930 8 TSVSLAVSR SLITTLAQKNPEEFKTSVSLAVSRLSRIVT NPEEFKTSVSLAVSRLSRIVTSASTDLQDY K T S S R L 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 3 1 0 0 2 0 0 9 0 918.51345 O94973;A0A0G2JS82;A0A0G2JQM1;E9PR62;A0A0G2JQA4;A0A0G2JRF9;A0A0G2JRS3;E9PNC4 O94973 224 232 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.00097604 87.476 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.2525 1.1377 9.8661 6 Median 0.98544 0.95654 NaN 1 0 Median 1.3131 1.1377 4.7297 2 0 Median 1.1766 1.2619 NaN 1 0 Median 1.3021 1.1157 8.2589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17364000 8119100 9245000 3445600 1846400 1599200 5247600 2402900 2844700 3585900 1621800 1964100 5085000 2248000 2837000 0 0 0 0 0 0 34285 1741 36042 179917;179918;179919;179920;179921;179922 181935;181936;181937;181938;181939;181940;181941;181942 181935 8 TSVSMNTDNLMR WLVSIKIAFDKKAQKTSVSMNTDNLMRIFT AQKTSVSMNTDNLMRIFTMGIDLTKPFEYL K T S M R I 0 1 2 1 0 0 0 0 0 0 1 0 2 0 0 2 2 0 0 1 0 0 12 0 1367.6173 Q9H9Y6 Q9H9Y6 407 418 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 2.406E-06 166.07 By matching By MS/MS By MS/MS 1 2 1 1.1816 1.1912 13.605 4 Median NaN NaN NaN 0 0 Median 1.2458 1.0851 NaN 1 0 Median 1.0962 1.1912 1.4417 2 0 Median 1.7485 1.4931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12905000 5935900 6969600 0 0 0 1208100 514840 693260 10815000 5022000 5793000 882410 399040 483360 0 0 0 0 0 0 34286 4004 36043 179923;179924;179925;179926 181943;181944;181945;181946 181943 4 TSVTDFLR KAEGYAEGDLTLYHRTSVTDFLRAANPVDF DLTLYHRTSVTDFLRAANPVDFLSKASEIM R T S L R A 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 937.4869 Q8IY81 Q8IY81 252 259 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.0035841 87.323 By matching By MS/MS By matching 1 3 1 1.1622 1.2185 9.4766 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1004 1.1792 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1622 1.2185 12.285 3 0 Median 1.5954 1.3086 NaN 1 0 Median 17616000 8287500 9329000 0 0 0 0 0 0 1320900 765940 555010 0 0 0 16157000 7471300 8685600 138700 50292 88404 34287 3338 36044 179927;179928;179929;179930;179931 181947;181948;181949;181950;181951 181950 5 TSVVGLFLR DLSDSFSGTEPEVHKTSVVGLFLRHMILAY EPEVHKTSVVGLFLRHMILAYSKLSFSQVF K T S L R H 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 1 1 0 0 2 0 0 9 0 990.58622 F5H0F9;Q9UJX4;F5GY68;F5H3S5;F5GZ05 F5H0F9 129 137 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 0.019166 40.103 By MS/MS 1 0.90019 0.95994 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90019 0.95994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2180300 1091200 1089100 0 0 0 0 0 0 2180300 1091200 1089100 0 0 0 0 0 0 0 0 0 34288 1019 36045 179932 181952 181952 1 TSYAQHQQVR FCVGFTKKRNNQIRKTSYAQHQQVRQIRKK NQIRKTSYAQHQQVRQIRKKMMEIMTREVQ K T S V R Q 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 10 0 1216.5949 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6;D6RAS7 P61247 153 162 RPS3A 40S ribosomal protein S3a yes no 2;3 0.00039516 65.347 By MS/MS By MS/MS By matching By MS/MS By MS/MS By matching 2 2 2 2 4 3 1.2755 1.1592 7.7715 15 Median 1.1549 1.1184 5.0039 2 0 Median 1.1941 1.0151 1.5769 2 0 Median 1.2842 1.2639 0.36621 2 0 Median 1.3708 1.1534 0.53238 2 0 Median 1.2259 1.21 4.2555 4 0 Median 1.4219 1.2535 5.5731 3 0 Median 8570900 3807600 4763300 3755800 1684200 2071600 2046700 934400 1112300 313310 133570 179740 655140 287610 367540 1337200 590660 746520 462690 177120 285570 34289 2553 36046 179933;179934;179935;179936;179937;179938;179939;179940;179941;179942;179943;179944;179945;179946;179947 181953;181954;181955;181956;181957;181958;181959;181960;181961;181962 181958 10 TSYEEFTHK FNMCGFECRILPKCRTSYEEFTHKDGVWNL ILPKCRTSYEEFTHKDGVWNLQNEVTKERT R T S H K D 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 1 2 0 1 0 0 0 9 0 1140.5088 Q6P2Q9 Q6P2Q9 1202 1210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0053629 57.859 By MS/MS By MS/MS By MS/MS 2 1 1 1.1164 1.0591 19.608 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0178 1.1337 24.82 2 2 Median 1.3007 1.1792 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0278 0.88119 NaN 1 0 Median 9130400 4246400 4884100 0 0 0 0 0 0 6274800 2934100 3340700 1769100 741040 1028000 0 0 0 1086600 571250 515350 34290 3157 36047 179948;179949;179950;179951 181963;181964;181965;181966;181967 181966 5 TSYEEFTHKDGVWNLQNEVTK FNMCGFECRILPKCRTSYEEFTHKDGVWNL THKDGVWNLQNEVTKERTAQCFLRVDDESM R T S T K E 0 0 2 1 0 1 3 1 1 0 1 2 0 1 0 1 3 1 1 2 0 0 21 1 2524.187 Q6P2Q9 Q6P2Q9 1202 1222 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 6.2011E-07 47.808 By matching By MS/MS 1 2 0.97974 1.1318 7.3582 3 Median 1.2375 1.2539 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9591 1.1092 2.8513 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20908000 10207000 10702000 2340500 1191500 1149000 0 0 0 18568000 9015100 9552700 0 0 0 0 0 0 0 0 0 34291 3157 36048 179952;179953;179954 181968;181969;181970 181968 3 TSYLTELIDR KELLKHKFIVKNSKKTSYLTELIDRFKRWK KNSKKTSYLTELIDRFKRWKAEGHSDDESD K T S D R F 0 1 0 1 0 0 1 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 10 0 1209.6241 H0Y630;B4DR80;Q9Y6E0;Q5JV99;Q5JV98;Q8NBY1;B4E0Y9;Q9P289 Q8NBY1 281 290 STK24;STK26 Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit;Serine/threonine-protein kinase 26 no no 2 0.014003 39.305 By MS/MS By MS/MS 1 1 1.163 1.1658 2.8305 2 Median 1.1921 1.1893 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1346 1.1427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5921300 2753100 3168200 2970700 1492400 1478300 0 0 0 2950500 1260600 1689900 0 0 0 0 0 0 0 0 0 34292 602;612 36049 179955;179956 181971;181972 181972 2 TSYMAQLMK EHERILDMCCAPGGKTSYMAQLMKNTGVIL CAPGGKTSYMAQLMKNTGVILANDANAERL K T S M K N 1 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 1 0 0 0 9 0 1071.5093 P46087 P46087 399 407 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0025334 71.342 By matching By MS/MS 2 3 1.1489 1.2026 23.294 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98678 1.0569 44.522 2 0 Median NaN NaN NaN 0 0 Median 1.1489 1.2149 5.6663 3 0 Plateau NaN NaN NaN 0 0 Median 24957000 12402000 12554000 0 0 0 0 0 0 5987600 3342400 2645100 0 0 0 18969000 9059800 9909200 0 0 0 34293 2338 36050 179957;179958;179959;179960;179961 181973;181974;181975;181976 181976 4 TSYMFLR IKQFLDFGRDNACEKTSYMFLRKELPVRLA GRDNACEKTSYMFLRKELPVRLANTMREVN K T S L R K 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 7 0 916.44767 Q15120 Q15120 44 50 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.011827 79.454 By matching By MS/MS 2 1 0.8708 0.87147 15.341 3 Median 0.8197 0.80463 20.695 2 0 Median NaN NaN NaN 0 0 Median 0.8708 0.87147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8343400 4335800 4007600 2453200 1195000 1258200 0 0 0 5890200 3140800 2749400 0 0 0 0 0 0 0 0 0 34294 2929 36051 179962;179963;179964 181977 181977 1 TTAAFQQGK YQKWMEEQAQSLIDKTTAAFQQGKIPPTPF QSLIDKTTAAFQQGKIPPTPFSAPPPAGAM K T T G K I 2 0 0 0 0 2 0 1 0 0 0 1 0 1 0 0 2 0 0 0 0 0 9 0 950.48214 P09234;A0A0A0MRR7;Q5TAL2 P09234 53 61 SNRPC U1 small nuclear ribonucleoprotein C yes no 2 0.0073446 51.787 By matching By MS/MS By matching 1 1 1 1.4154 1.3554 21.432 3 Plateau 1.1501 1.1092 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4296 1.3554 NaN 1 0 Median 1.0928 0.88314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1552400 687540 864860 313850 137420 176430 0 0 0 1077900 475510 602360 160680 74610 86069 0 0 0 0 0 0 34295 169 36052 179965;179966;179967 181978;181979 181979 2 TTAAHGLELR LLRELYLFDVLRADRTTAAHGLELRVPFLD LRADRTTAAHGLELRVPFLDHRFSSYYLSL R T T L R V 2 1 0 0 0 0 1 1 1 0 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1067.5724 P08243 P08243 408 417 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2 0.0044231 67.881 By MS/MS 2 1.0441 0.90337 NaN 1 Median NaN NaN NaN 0 0 Median 1.0441 0.90337 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9843200 4751000 5092200 0 0 0 9843200 4751000 5092200 0 0 0 0 0 0 0 0 0 0 0 0 34296 1901 36053 179968;179969 181980;181981 181980 2 TTAAHSLVGTPYYMSPER VKLGDLGLGRFFSSKTTAAHSLVGTPYYMS AHSLVGTPYYMSPERIHENGYNFKSDIWSL K T T E R I 2 1 0 0 0 0 1 1 1 0 1 0 1 0 2 2 3 0 2 1 0 0 18 0 1979.9411 Q8TDX7 Q8TDX7 190 207 NEK7 Serine/threonine-protein kinase Nek7 yes yes 3 1.52E-06 73.498 By MS/MS By MS/MS 1 1 1.1121 1.0701 49.923 2 Median 0.80294 0.7518 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5403 1.5231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18571000 9382200 9188900 14606000 7828700 6777800 0 0 0 3964600 1553500 2411100 0 0 0 0 0 0 0 0 0 34297 3474 36054 179970;179971 181982;181983 181982 2 TTAAMWALQTVEK SLTLATVNARWLEPRTTAAMWALQTVEKER PRTTAAMWALQTVEKERGLGGEVPGSHQGP R T T E K E 3 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 3 1 0 1 0 0 13 0 1448.7334 K7ELQ9;Q6UW68;K7EM09;K7EPR0 K7ELQ9 110 122 TMEM205 Transmembrane protein 205 yes no 2 0.00013679 140.07 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.172 1.1445 20.787 5 Median 1.152 1.1318 5.0673 2 0 Median 1.3082 1.1445 NaN 1 0 Median 1.172 1.2836 NaN 1 0 Median 0.85997 0.74993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28235000 13140000 15094000 19232000 8675100 10557000 6108700 2678200 3430500 1969900 1201900 768030 924000 584980 339020 0 0 0 0 0 0 34298 1379 36055 179972;179973;179974;179975;179976 181984;181985;181986;181987;181988;181989 181984 6 TTAARPTFEPAR ______________________________ ______________________________ M T T A R G 3 2 0 0 0 0 1 0 0 0 0 0 0 1 2 0 3 0 0 0 0 0 12 1 1316.6837 Q9P013 Q9P013 2 13 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2 1.4736E-06 123.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.85672 0.84581 15.219 6 Median 0.81808 0.88071 NaN 1 0 Median 0.84319 0.77612 NaN 1 0 Median 0.64465 0.67286 NaN 1 0 Median 0.87045 0.81229 NaN 1 0 Median 0.92473 0.99492 1.0417 2 0 Median NaN NaN NaN 0 0 Median 93910000 50887000 43023000 17117000 8549600 8567700 4893700 2559000 2334800 26125000 15450000 10675000 15376000 8678500 6697300 30397000 15650000 14748000 0 0 0 34299 4196 36056 179977;179978;179979;179980;179981;179982 181990;181991;181992;181993;181994;181995;181996;181997;181998;181999 181991 10 TTAATLMNAYSSR KDEVYQILEKGAAKRTTAATLMNAYSSRSH KRTTAATLMNAYSSRSHSVFSVTIHMKETT R T T S R S 3 1 1 0 0 0 0 0 0 0 1 0 1 0 0 2 3 0 1 0 0 0 13 0 1385.6609 P52732 P52732 222 234 KIF11 Kinesin-like protein KIF11 yes yes 2 3.9044E-05 125.22 By MS/MS By matching 1 1 1.112 1.0113 7.254 2 Median 0.9959 0.96076 NaN 1 0 Median 1.2416 1.0646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10271000 5246900 5024100 8264100 4238000 4026100 2006800 1008900 997980 0 0 0 0 0 0 0 0 0 0 0 0 34300 2454 36057 179983;179984 182000 182000 1 TTAEDGVPAPPLLDPIVQQFGQFSK REPPGSTAGLPQEPKTTAEDGVPAPPLLDP PLLDPIVQQFGQFSKDKALEEEEDDRPYDP K T T S K D 2 0 0 2 0 3 1 2 0 1 2 1 0 2 4 1 2 0 0 2 0 0 25 0 2654.3592 Q9BTC0 Q9BTC0 1348 1372 DIDO1 Death-inducer obliterator 1 yes yes 3 5.4839E-05 36.576 By MS/MS 1 0.41052 0.45713 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41052 0.45713 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5582200 4181600 1400600 0 0 0 0 0 0 5582200 4181600 1400600 0 0 0 0 0 0 0 0 0 34301 3824 36058 179985 182001 182001 1 TTAENEFVMLK VEDFKNKYEDEINKRTTAENEFVMLKKDVD INKRTTAENEFVMLKKDVDAAYMNKVELEA R T T L K K 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1281.6275 CON__P13647;P13647;F8W0C6;H0YIN9 CON__P13647 266 276 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.0044404 69.423 By MS/MS 1 0.15634 0.16893 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.15634 0.16893 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3922200 3265300 656980 0 0 0 0 0 0 3922200 3265300 656980 0 0 0 0 0 0 0 0 0 + 34302 757 36059 179986 182002 182002 1 TTAENEFVMLKK VEDFKNKYEDEINKRTTAENEFVMLKKDVD NKRTTAENEFVMLKKDVDAAYMNKVELEAK R T T K K D 1 0 1 0 0 0 2 0 0 0 1 2 1 1 0 0 2 0 0 1 0 0 12 1 1409.7225 CON__P13647;P13647;F8W0C6;H0YIN9 CON__P13647 266 277 KRT5 Keratin, type II cytoskeletal 5 no no 2;3 0.0009811 62.924 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.21012 0.21428 60.462 5 Median 0.32397 0.34681 50.006 2 2 Median NaN NaN NaN 0 0 Median 0.21012 0.21428 NaN 1 1 Median 0.1797 0.12988 NaN 1 1 Median 0.10477 0.10487 NaN 1 1 Median NaN NaN NaN 0 0 Median 30596000 23733000 6863300 21582000 15677000 5905100 0 0 0 3690000 3286400 403540 869160 761650 107510 4454700 4007400 447250 0 0 0 + 34303 757 36060 179987;179988;179989;179990;179991;179992 182003;182004;182005;182006;182007;182008 182003 6 TTAGSVDWTDQLGLR PSSKMEGGHFVPPGKTTAGSVDWTDQLGLR TTAGSVDWTDQLGLRNLEVSSCVGSGGSSE K T T L R N 1 1 0 2 0 1 0 2 0 0 2 0 0 0 0 1 3 1 0 1 0 0 15 0 1618.7951 Q9C0C2 Q9C0C2 1154 1168 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 7.8912E-13 97.214 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34304 3903 36061 179993 182009 182009 1 TTALDQLSEK ERNQLRGELDTMSKKTTALDQLSEKMKEKT TMSKKTTALDQLSEKMKEKTQELESHQSEC K T T E K M 1 0 0 1 0 1 1 0 0 0 2 1 0 0 0 1 2 0 0 0 0 0 10 0 1104.5663 P49454 P49454 1974 1983 CENPF Centromere protein F yes yes 2 0.0087066 46.158 By MS/MS 1 1.3819 1.5014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3819 1.5014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2993800 1168700 1825000 0 0 0 0 0 0 2993800 1168700 1825000 0 0 0 0 0 0 0 0 0 34305 2383 36062 179994 182010 182010 1 TTANPVYSGAVFEPER HLEEIQSKRQERKRRTTANPVYSGAVFEPE TANPVYSGAVFEPERKKSAVTYLNSTMHPG R T T E R K 2 1 1 0 0 0 2 1 0 0 0 0 0 1 2 1 2 0 1 2 0 0 16 0 1736.837 Q96BD5 Q96BD5 394 409 PHF21A PHD finger protein 21A yes yes 2 5.2969E-06 72.958 By MS/MS 1 0.54003 0.57391 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54003 0.57391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8556200 5955200 2601000 0 0 0 0 0 0 8556200 5955200 2601000 0 0 0 0 0 0 0 0 0 34306 3605 36063 179995 182011 182011 1 TTAQVLIR LEDPRIKAIAAKHNKTTAQVLIRFPMQRNL IAAKHNKTTAQVLIRFPMQRNLVVIPKSVT K T T I R F 1 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 8 0 900.53927 P15121;C9JRZ8 P15121 244 251 AKR1B1;AKR1B15 Aldose reductase;Aldo-keto reductase family 1 member B15 yes no 2 0.0022895 110.61 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 2 1.1581 0.9852 18.622 9 Median 0.9624 0.92734 6.9181 2 0 Median 1.3016 1.1266 9.3317 3 0 Median 0.9996 0.9852 NaN 1 0 Median 1.2757 1.0696 NaN 1 0 Median 0.95718 1.0277 47.541 2 0 Median NaN NaN NaN 0 0 Median 86453000 40455000 45998000 38584000 18411000 20174000 41906000 19233000 22674000 3041800 1492600 1549300 884980 362370 522610 2035300 956830 1078400 0 0 0 34307 2015 36064 179996;179997;179998;179999;180000;180001;180002;180003;180004 182012;182013;182014;182015;182016;182017;182018 182017 7 TTDDTTTDNYIAQGK SSNVNKQEENGVFIKTTDDTTTDNYIAQGK TTDDTTTDNYIAQGKRKSNEMITNLGKKQK K T T G K R 1 0 1 3 0 1 0 1 0 1 0 1 0 0 0 0 5 0 1 0 0 0 15 0 1642.7322 Q7Z2T5 Q7Z2T5 595 609 TRMT1L TRMT1-like protein yes yes 2 0.0029011 37.556 By matching By MS/MS 1 1 0.87913 0.91618 24.503 2 Median 1.0714 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72139 0.77044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2964100 1744100 1220100 809190 420710 388480 0 0 0 2154900 1323300 831600 0 0 0 0 0 0 0 0 0 34308 3235 36065 180005;180006 182019 182019 1 TTDGVYEGVAIGGDR RSGGMSNELNNIISRTTDGVYEGVAIGGDR TTDGVYEGVAIGGDRYPGSTFMDHVLRYQD R T T D R Y 1 1 0 2 0 0 1 4 0 1 0 0 0 0 0 0 2 0 1 2 0 0 15 0 1508.7107 P53396 P53396 677 691 ACLY ATP-citrate synthase yes yes 2 4.5325E-07 97.214 By MS/MS By matching 1 1 1.2279 1.1842 23.32 2 Median NaN NaN NaN 0 0 Median 1.1994 1.0042 NaN 1 0 Median 1.257 1.3965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11863000 5177900 6685100 0 0 0 9380600 4102700 5277900 2482400 1075200 1407100 0 0 0 0 0 0 0 0 0 34309 2467 36066 180007;180008 182020 182020 1 TTDGVYEGVAIGGDRYPGSTFMDHVLR RSGGMSNELNNIISRTTDGVYEGVAIGGDR GDRYPGSTFMDHVLRYQDTPGVKMIVVLGE R T T L R Y 1 2 0 3 0 0 1 5 1 1 1 0 1 1 1 1 3 0 2 3 0 0 27 1 2912.3763 P53396 P53396 677 703 ACLY ATP-citrate synthase yes yes 3;4 0.011915 17.794 By MS/MS By matching 2 2 0.9872 0.95531 8.1691 4 Median 0.91542 1.0171 12.473 2 0 Median 0.9909 0.95531 2.3263 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10180000 4886600 5293100 8179600 3967400 4212100 2000100 919180 1081000 0 0 0 0 0 0 0 0 0 0 0 0 34310 2467 36067 180009;180010;180011;180012 182021;182022;182023 182021 3 TTDGYLLR VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR K T T L R L 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 8 0 937.4869 P61247;E9PFI5;D6RG13;H0Y9Y4;D6RAT0;H0Y8L7;D6RB09;D6R9B6;D6RAS7;D6RED7 P61247 129 136 RPS3A 40S ribosomal protein S3a yes no 2 0.00070426 151.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1 1.1518 1.0646 57.285 8 Median 1.1523 1.075 NaN 1 0 Median 0.73862 0.60155 65.681 2 0 Median 1.1063 1.0818 NaN 1 0 Median 0.65185 0.55512 90.788 2 0 Median 1.404 1.4462 NaN 1 1 Median 1.3339 1.0745 NaN 1 1 Median 174530000 79673000 94857000 91548000 40946000 50602000 51372000 24119000 27253000 9133900 4699000 4434900 11430000 5185800 6244300 6693800 2832100 3861700 4351700 1890500 2461200 34311 2553 36068 180013;180014;180015;180016;180017;180018;180019;180020 182024;182025;182026;182027;182028;182029;182030;182031;182032;182033;182034 182031 11 TTDIVIR VSVYDIADHPDFRFRTTDIVIRIGNTEDGA DHPDFRFRTTDIVIRIGNTEDGAPHKEDEP R T T I R I 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 7 0 816.47052 Q9C0C9;K7ES11 Q9C0C9 655 661 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.023925 56.122 By MS/MS 1 1.4126 1.1932 NaN 1 Median NaN NaN NaN 0 0 Median 1.4126 1.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2444300 874530 1569800 0 0 0 2444300 874530 1569800 0 0 0 0 0 0 0 0 0 0 0 0 34312 3904 36069 180021 182035 182035 1 TTDLLTDWEK LQMKIVQEDRAVESRTTDLLTDWEKTKPVT AVESRTTDLLTDWEKTKPVTGNLRPEEALQ R T T E K T 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 3 1 0 0 0 0 10 0 1220.5925 Q14204 Q14204 1254 1263 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00031227 125.56 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 1.1689 1.1157 17.071 8 Median 0.94915 0.93361 10.28 2 1 Median 1.2206 1.0772 NaN 1 0 Median 1.2657 1.3316 20.053 2 0 Median 1.266 1.1776 1.1089 2 0 Median NaN NaN NaN 0 0 Median 1.1194 0.96652 NaN 1 0 Median 115820000 53952000 61866000 44944000 22075000 22870000 9905900 4199400 5706500 58235000 26484000 31751000 2403900 1034400 1369500 0 0 0 328990 159500 169490 34313 2865 36070 180022;180023;180024;180025;180026;180027;180028;180029 182036;182037;182038;182039;182040;182041;182042 182040 7 TTDMAPSKETEMALAK ERPPAQALEIMMGLKTTDMAPSKETEMALA TDMAPSKETEMALAKDMALATKTEVALAKD K T T A K D 3 0 0 1 0 0 2 0 0 0 1 2 2 0 1 1 3 0 0 0 0 0 16 1 1722.8168 E7EVA0;P27816;H7C456 E7EVA0 264 279 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 5.5319E-07 88.768 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 2 4 1 0.96784 0.98064 34.542 12 Median 0.84873 0.8944 15.988 4 0 Median 0.88441 0.82523 NaN 1 0 Median 1.5939 1.8611 10.962 2 1 Median 0.96913 0.9153 33.255 4 1 Median 1.1303 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median 119990000 52172000 67814000 37630000 19929000 17701000 3267100 1886700 1380400 60447000 21536000 38911000 16059000 8036600 8021900 2583500 783550 1799900 0 0 0 34314 895 36071 180030;180031;180032;180033;180034;180035;180036;180037;180038;180039;180040;180041 182043;182044;182045;182046;182047;182048;182049;182050;182051;182052 182051 10 TTEEALHASHGFMWYT TRWVPPLIGELYGLRTTEEALHASHGFMWY TEEALHASHGFMWYT_______________ R T T Y T - 2 0 0 0 0 0 2 1 2 0 1 0 1 1 0 1 3 1 1 0 0 0 16 0 1879.8199 Q9P0J0 Q9P0J0 129 144 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes yes 2 0.00012493 64.82 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5062500 0 0 5062500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34315 4203 36072 180042 182053 182053 1 TTEINFK QEGDTFYIKTSTTVRTTEINFKVGEEFEEQ IKTSTTVRTTEINFKVGEEFEEQTVDGRPC R T T F K V 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 7 0 851.43888 P29373;Q5SYZ4;B5MCB5;P29762 P29373 61 67 CRABP2;CRABP1 Cellular retinoic acid-binding protein 2;Cellular retinoic acid-binding protein 1 yes no 2 0.0083653 86.086 By MS/MS By MS/MS 1 1 1.1627 1.0056 43.147 2 Median 0.81536 0.74115 NaN 1 0 Median 1.6579 1.3643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27542000 13076000 14465000 13438000 7685900 5752000 14104000 5390400 8713300 0 0 0 0 0 0 0 0 0 0 0 0 34316 2171 36073 180043;180044 182054;182055;182056;182057 182056 4 TTELIRR KEQLPIFKAQNPDAKTTELIRRIAQRWREL KAQNPDAKTTELIRRIAQRWRELPDSKKKI K T T R R I 0 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 7 1 887.51886 Q00059;H7BYN3 Q00059 77 83 TFAM Transcription factor A, mitochondrial yes no 2 0.039366 51.572 By MS/MS By matching 1 1 1.2323 1.1874 1.9189 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1298 1.1714 NaN 1 0 Median 1.3442 1.2036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3315800 1465000 1850800 0 0 0 0 0 0 2698300 1220200 1478100 617470 244810 372660 0 0 0 0 0 0 34317 2673 36074 180045;180046 182058 182058 1 TTELVNKDLDIYYK RDAEEKYREMMIVMRTTELVNKDLDIYYKT RTTELVNKDLDIYYKTLDQAIMKFHSMKME R T T Y K T 0 0 1 2 0 0 1 0 0 1 2 2 0 0 0 0 2 0 2 1 0 0 14 1 1713.8825 Q92878;A0A1W2PQ90;A0A494BZX8 Q92878 1113 1126 RAD50 DNA repair protein RAD50 yes no 2;3 3.0371E-06 122.51 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.96794 1.0173 14.52 5 Median 0.96794 0.94329 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9758 1.1378 2.3542 2 0 Median NaN NaN NaN 0 0 Median 0.95082 1.0173 NaN 1 0 Median 1.007 0.80559 NaN 1 0 Median 62557000 31658000 30899000 7680000 3865000 3815000 0 0 0 50576000 25839000 24736000 0 0 0 3887900 1738900 2149100 413160 214270 198880 34318 3561 36075 180047;180048;180049;180050;180051 182059;182060;182061;182062;182063 182062 5 TTEMETIYDLGTK PATGTGSKVGKLTLKTTEMETIYDLGTKMI LKTTEMETIYDLGTKMIESLTKDKVQAGDV K T T T K M 0 0 0 1 0 0 2 1 0 1 1 1 1 0 0 0 4 0 1 0 0 0 13 0 1500.7018 Q9Y230;M0R0Y3;X6R2L4 Q9Y230 165 177 RUVBL2 RuvB-like 2 yes no 2 7.1234E-07 149.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 4 1 1 1.1729 1.0666 6.0828 12 Median 1.1237 1.0461 8.716 2 1 Median 1.3222 1.1285 NaN 1 0 Median 1.0884 1.0279 2.6855 3 1 Plateau 1.2671 1.1086 7.4602 4 0 Median 1.1351 1.0819 NaN 1 0 Median 1.2243 1.0046 NaN 1 0 Median 132670000 60617000 72054000 23302000 10364000 12937000 3287600 1431100 1856400 83575000 38920000 44655000 14914000 6511600 8402200 7474800 3336100 4138600 118840 54147 64690 34319 4368 36076;36077 180052;180053;180054;180055;180056;180057;180058;180059;180060;180061;180062;180063 182064;182065;182066;182067;182068;182069;182070;182071;182072;182073;182074;182075;182076;182077;182078;182079;182080;182081 182081 1950 18 TTEPGVTGLLLAVEGPAAK SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG GVTGLLLAVEGPAAKRTMRPTQKDSETVDE K T T A K R 3 0 0 0 0 0 2 3 0 0 3 1 0 0 2 0 3 0 0 2 0 0 19 0 1823.004 Q14690;A0A3B3IUD7 Q14690 982 1000 PDCD11 Protein RRP5 homolog yes no 2 6.6264E-07 61.038 By matching By MS/MS 1 1 0.84032 0.8708 7.4951 2 Median NaN NaN NaN 0 0 Median 0.95218 0.9182 NaN 1 0 Median 0.74161 0.82585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5974400 3361800 2612600 0 0 0 549110 327030 222080 5425300 3034800 2390500 0 0 0 0 0 0 0 0 0 34320 448 36078 180064;180065 182082;182083 182083 2 TTESHMDWEK CMKNNLPSNDSSKFKTTESHMDWEKVAFKD SSKFKTTESHMDWEKVAFKDFSGDMCKLKW K T T E K V 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 10 0 1262.5238 P17480;E9PKP7;E9PMM2 P17480 48 57 UBTF Nucleolar transcription factor 1 yes no 3 0.02656 23.376 By matching By MS/MS 1 1 1.3044 1.2096 56.826 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78548 0.80933 NaN 1 0 Median 2.166 1.8078 NaN 1 0 Median 2591700 1384000 1207600 0 0 0 0 0 0 0 0 0 0 0 0 1979400 1183800 795640 612210 200210 412000 34321 2040 36079 180066;180067 182084 182084 1 TTETQVLVASAQK SIVEQRLEALEEKIRTTETQVLVASAQKKL IRTTETQVLVASAQKKLLEERLKLVSELWD R T T Q K K 2 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7355 P12081;B3KWE1;B4DDD8;B4E1C5 P12081 406 418 HARS Histidine--tRNA ligase, cytoplasmic yes no 2;3 5.6333E-07 166.86 By MS/MS By MS/MS By MS/MS 2 3 4 1.1395 1.0155 24.391 9 Median NaN NaN NaN 0 0 Median 0.9014 0.77007 45.886 2 0 Median 1.1395 1.1374 7.9146 3 0 Median 1.1329 0.95174 17.445 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57120000 26333000 30787000 0 0 0 3132800 1320000 1812800 23078000 10352000 12726000 30909000 14661000 16248000 0 0 0 0 0 0 34322 1975 36080 180068;180069;180070;180071;180072;180073;180074;180075;180076 182085;182086;182087;182088;182089;182090;182091;182092 182085 8 TTEVGSVSEVKK ______________________________ ______________________________ M T T K K D 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 2 2 0 0 3 0 0 12 1 1262.6718 O43491;E9PHY5;E9PK52;E9PII3;E9PQD2;E9PIG0;E9PRG1;E9PQN0;E9PJP4 O43491 2 13 EPB41L2 Band 4.1-like protein 2 yes no 2 1.8605E-06 112.13 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1205 1.0729 4.8729 5 Median 1.0209 1.0719 NaN 1 0 Median 1.1784 1.1135 4.177 2 1 Median 0.86657 0.9997 NaN 1 0 Median 1.1263 1.0729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33133000 16022000 17110000 7499800 4019000 3480800 15400000 6868200 8532300 8482000 4186200 4295700 1750500 949000 801460 0 0 0 0 0 0 34323 1573 36081 180077;180078;180079;180080;180081 182093;182094;182095;182096;182097;182098 182097 6 TTFEDLIQR KITKKPIPDEHLILKTTFEDLIQRCLSSAT EHLILKTTFEDLIQRCLSSATDPQTKRKLD K T T Q R C 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 9 0 1121.5717 D6REX3;O94979;H7BXG7;H0Y8W8;H0YAF5 D6REX3 1152 1160 SEC31A Protein transport protein Sec31A yes no 2 0.0036618 63.565 By MS/MS By matching By MS/MS By matching By matching 2 3 3 1 1 1.1333 0.99993 20.192 10 Median 0.89633 0.856 36.402 2 0 Median 1.1215 0.98217 9.5755 3 0 Median 1.0502 0.99451 23.129 3 2 Median 1.3974 1.1359 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4633 1.2104 NaN 1 0 Median 15594000 7655800 7938400 7068400 3435900 3632600 1483400 704380 779030 6705600 3412000 3293600 160160 68367 91794 0 0 0 176500 35159 141340 34324 823 36082 180082;180083;180084;180085;180086;180087;180088;180089;180090;180091 182099;182100;182101;182102 182100 4 TTFQENTQSISVR SLSIAGVGLDSSNLKTTFQENTQSISVRGI LKTTFQENTQSISVRGIKFIPGPPGNKDLC K T T V R G 0 1 1 0 0 2 1 0 0 1 0 0 0 1 0 2 3 0 0 1 0 0 13 0 1509.7423 A6NHR9;J3KTL8 A6NHR9 1208 1220 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 1.1092E-30 205.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 3 1.1161 1.0048 23.706 7 Median NaN NaN NaN 0 0 Median 1.3847 1.1811 NaN 1 0 Median 1.0125 1.1086 14.391 2 0 Median 1.1379 1.0048 NaN 1 0 Median 0.66261 0.67895 NaN 1 0 Median 1.3665 1.1223 31.296 2 1 Median 121310000 61774000 59538000 0 0 0 8489000 3040200 5448800 78884000 40945000 37939000 13160000 6387400 6772900 14469000 8903000 5565900 6310200 2498400 3811800 34325 518 36083 180092;180093;180094;180095;180096;180097;180098;180099 182103;182104;182105;182106;182107;182108;182109;182110;182111;182112 182104 10 TTFTSYQLEELEK KADSESNKGKKRRNRTTFTSYQLEELEKVF NRTTFTSYQLEELEKVFQKTHYPDVYAREQ R T T E K V 0 0 0 0 0 1 3 0 0 0 2 1 0 1 0 1 3 0 1 0 0 0 13 0 1587.7668 Q9H161 Q9H161 219 231 ALX4 Homeobox protein aristaless-like 4 yes yes 2 0.0044158 40.715 By MS/MS By matching 2 1 0.9563 0.90774 14.931 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85486 0.82705 13.166 2 0 Median 1.1367 1.0124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6234500 3635100 2599400 0 0 0 0 0 0 6006600 3518300 2488200 227950 116710 111240 0 0 0 0 0 0 34326 3932 36084 180100;180101;180102 182113 182113 1 TTFTVAQNER SISPFMRKGMAGDWKTTFTVAQNERFDADY AGDWKTTFTVAQNERFDADYAEKMAGCSLS K T T E R F 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 3 0 0 1 0 0 10 0 1165.5728 A0A0A6YYL2;P0DMN0;P0DMM9;P50225;H3BRY5;P50226;E9PKW4 P50225 266 275 SULT1A4;SULT1A3;SULT1A1;SULT1A2 Sulfotransferase;Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1;Sulfotransferase 1A2 no no 2 1.8105E-15 186.16 By MS/MS By MS/MS 1 1 1.2321 1.0246 NaN 1 Median NaN NaN NaN 0 0 Median 1.2321 1.0246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16365000 5827800 10538000 0 0 0 16365000 5827800 10538000 0 0 0 0 0 0 0 0 0 0 0 0 34327 2410;208 36085 180103;180104 182114;182115;182116 182115 3 TTFYTALGR LGINNQSNLTDMRCRTTFYTALGRLLMVDL TDMRCRTTFYTALGRLLMVDLGEDEDQYEQ R T T G R L 1 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 3 0 1 0 0 0 9 0 1028.5291 E7ESC6;Q9UIA9 E7ESC6 667 675 XPO7 Exportin-7 yes no 2 0.0056689 89.296 By MS/MS By MS/MS By matching 3 1 1 0.98973 0.96654 20.069 4 Median 0.94546 0.89858 23.185 2 1 Median 1.4115 1.2039 NaN 1 0 Median 0.89316 0.88243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20890000 10356000 10534000 14230000 7071300 7158300 3216200 1421100 1795200 3444700 1864100 1580600 0 0 0 0 0 0 0 0 0 34328 885 36086 180105;180106;180107;180108;180109 182117;182118;182119;182120 182118 4 TTGDKTVEAPLVTEEK VTVVTLESAPSALEKTTGDKTVEAPLVTEE TGDKTVEAPLVTEEKTVEPATVSEEAKPAS K T T E K T 1 0 0 1 0 0 3 1 0 0 1 2 0 0 1 0 4 0 0 2 0 0 16 1 1716.8782 Q96T58 Q96T58 1657 1672 SPEN Msx2-interacting protein yes yes 3 0.0020325 31.876 By MS/MS By MS/MS 1 1 0.54604 0.6033 16.017 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59528 0.67564 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.50087 0.5387 NaN 1 0 Median NaN NaN NaN 0 0 Median 13437000 8123900 5313300 0 0 0 0 0 0 6219400 3288700 2930700 0 0 0 7217800 4835200 2382600 0 0 0 34329 3741 36087 180110;180111 182121;182122 182122 2 TTGEENGVEAEEWGK LILQLVHVSQEDKRKTTGEENGVEAEEWGK TTGEENGVEAEEWGKFLHTKNKLYTDFDEI K T T G K F 1 0 1 0 0 0 5 3 0 0 0 1 0 0 0 0 2 1 0 1 0 0 15 0 1634.706 O00429;F8VZ52;F8W1W3;B4DDQ3;B4DPZ9 O00429 78 92 DNM1L Dynamin-1-like protein yes no 2 0.00066957 47.288 By MS/MS 1 0.62969 0.61586 NaN 1 Median 0.62969 0.61586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2547800 1204000 1343800 2547800 1204000 1343800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34330 1463 36088 180112 182123;182124 182124 2 TTGEGTSLR VKRGVLLMLFGGVPKTTGEGTSLRGDINVC FGGVPKTTGEGTSLRGDINVCIVGDPSTAK K T T L R G 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 1 3 0 0 0 0 0 9 0 920.45632 Q14566 Q14566 379 387 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.053179 30.167 By MS/MS By matching 1 1 0.97425 0.93281 11.884 2 Median NaN NaN NaN 0 0 Median 0.96193 0.85763 NaN 1 0 Median 0.98674 1.0146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1313400 650630 662780 0 0 0 1115600 559090 556530 197790 91538 106250 0 0 0 0 0 0 0 0 0 34331 2881 36089 180113;180114 182125;182126;182127 182127 3 TTGEVVSGVVSK EAALVYVENAHVAGKTTGEVVSGVVSKVFN AGKTTGEVVSGVVSKVFNQPKAKAKELGIE K T T S K V 0 0 0 0 0 0 1 2 0 0 0 1 0 0 0 2 2 0 0 4 0 0 12 0 1161.6241 Q14008;E9PQH5 Q14008 85 96 CKAP5 Cytoskeleton-associated protein 5 yes no 2 1.7424E-05 97.456 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 5 2 3 1.2292 1.1055 19.642 14 Median 1.1072 1.0648 NaN 1 0 Median 0.6821 0.60509 NaN 1 0 Median 1.1025 1.1997 17.257 2 0 Median 1.3293 1.1415 5.9881 5 1 Median 1.1971 1.2566 17.375 2 1 Median 1.289 1.0594 9.2215 3 1 Median 88718000 39285000 49432000 4313900 1869300 2444600 4455300 2551000 1904300 34659000 15516000 19143000 20010000 8568400 11442000 8035100 3392800 4642300 17244000 7388300 9856200 34332 2850 36090 180115;180116;180117;180118;180119;180120;180121;180122;180123;180124;180125;180126;180127;180128 182128;182129;182130;182131;182132;182133;182134;182135;182136;182137;182138;182139;182140;182141;182142;182143;182144 182131 17 TTGFGMIYDSLDYAK VIFVFGFRTHFGGGKTTGFGMIYDSLDYAK TTGFGMIYDSLDYAKKNEPKHRLARHGLYE K T T A K K 1 0 0 2 0 0 0 2 0 1 1 1 1 1 0 1 2 0 2 0 0 0 15 0 1680.7705 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847;A0A2R8Y8A0 E7ETK0 69 83 RPS24 40S ribosomal protein S24 yes no 2 0.00017991 75.695 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 6 2 2 4 4 1.2363 1.0954 19.821 24 Median 1.1009 1.0385 26.793 6 1 Median 1.2572 1.0837 7.6268 6 0 Median 1.133 1.1136 5.0005 2 0 Median 1.3543 1.1172 5.3811 2 0 Median 1.2631 1.5181 12.814 4 1 Linear 1.4339 1.1369 13.24 4 0 Median 107860000 50262000 57595000 58476000 28782000 29694000 20994000 9231300 11763000 2731900 1302700 1429300 1488500 579630 908840 22112000 9510900 12601000 2053900 855710 1198200 34333 387 36091;36092 180129;180130;180131;180132;180133;180134;180135;180136;180137;180138;180139;180140;180141;180142;180143;180144;180145;180146;180147;180148;180149;180150;180151;180152 182145;182146;182147;182148;182149;182150;182151;182152;182153;182154;182155 182149 183 11 TTGFTFVVDR EKNGLQKYEYVLHPRTTGFTFVVDRLREGK VLHPRTTGFTFVVDRLREGKNLDAVHDITV R T T D R L 0 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 3 0 0 2 0 0 10 0 1141.5768 Q6UWP7;C9K0C3 Q6UWP7 235 244 LCLAT1 Lysocardiolipin acyltransferase 1 yes no 2 0.00037063 81.525 By MS/MS By MS/MS 1 1 1.3463 1.2128 5.9396 2 Median 1.2962 1.2648 NaN 1 0 Median 1.3984 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21293000 8946700 12346000 14653000 6189200 8464200 6639200 2757500 3881700 0 0 0 0 0 0 0 0 0 0 0 0 34334 3187 36093 180153;180154 182156;182157;182158;182159 182156 4 TTGIVETHFTFK DYIPTQQDVLRTRVKTTGIVETHFTFKDLH RVKTTGIVETHFTFKDLHFKMFDVGGQRSE K T T F K D 0 0 0 0 0 0 1 1 1 1 0 1 0 2 0 0 4 0 0 1 0 0 12 0 1379.7085 P04899;P09471;H3BTM2;A0A1W2PP38;P08754;P63096;A0A3B3ITM0 P04899 182 193 GNAI2;GNAO1;GNAI3;GNAI1 Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1 no no 2;3 5.4737E-06 98.943 By MS/MS By matching By MS/MS By matching By MS/MS 2 4 3 2 2 1.207 1.0722 19.764 12 Median 0.95768 0.88525 5.5209 2 0 Median 1.1258 0.96507 19.722 4 0 Median 1.2984 1.2942 12.499 2 1 Median 1.3375 1.1234 4.9044 2 0 Median 1.2079 1.2193 7.3168 2 0 Median NaN NaN NaN 0 0 Median 61187000 30042000 31145000 33379000 17847000 15532000 5098200 2299400 2798700 13679000 6131300 7547900 1486000 749450 736590 7544200 3014500 4529700 0 0 0 34335 1855;1908;2617 36094 180155;180156;180157;180158;180159;180160;180161;180162;180163;180164;180165;180166;180167 182160;182161;182162;182163;182164;182165;182166;182167;182168 182162 9 TTGIVMDSGDGVTHTVPIYEGYALPHAILR YVAIQAVLSLYASGRTTGIVMDSGDGVTHT VPIYEGYALPHAILRLDLAGRDLTDYLMKI R T T L R L 2 1 0 2 0 0 1 4 2 3 2 0 1 0 2 1 4 0 2 3 0 0 30 0 3182.607 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L4N8;A0A2R8YEA7 P63261 148 177 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2;3;4;5 1.4011E-104 175.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 15 7 11 7 7 10 0.81806 0.73375 23.324 56 Median 0.80604 0.81105 11.718 15 3 Median 0.82262 0.71388 10.335 7 2 Median 0.61669 0.68284 16.206 11 4 Median 0.88616 0.72638 17.884 6 0 Median 0.6854 0.70355 19.132 7 0 Median 0.91129 0.74145 43.156 10 0 Median 5009100000 2886300000 2122800000 972680000 523730000 448950000 1000500000 528540000 472000000 2724300000 1668300000 1056000000 184870000 95271000 89604000 72551000 42991000 29560000 54066000 27418000 26648000 34336 2625 36095;36096 180168;180169;180170;180171;180172;180173;180174;180175;180176;180177;180178;180179;180180;180181;180182;180183;180184;180185;180186;180187;180188;180189;180190;180191;180192;180193;180194;180195;180196;180197;180198;180199;180200;180201;180202;180203;180204;180205;180206;180207;180208;180209;180210;180211;180212;180213;180214;180215;180216;180217;180218;180219;180220;180221;180222;180223;180224 182169;182170;182171;182172;182173;182174;182175;182176;182177;182178;182179;182180;182181;182182;182183;182184;182185;182186;182187;182188;182189;182190;182191;182192;182193;182194;182195;182196;182197;182198;182199;182200;182201;182202;182203;182204;182205;182206;182207;182208;182209;182210;182211;182212;182213;182214;182215;182216;182217;182218;182219;182220;182221;182222;182223;182224;182225;182226;182227;182228;182229;182230;182231;182232 182212 1291 63 TTGKPIEASIR RSKQHLRLVFDEYLKTTGKPIEASIRGELS EYLKTTGKPIEASIRGELSGDFEKLMLAVV K T T I R G 1 1 0 0 0 0 1 1 0 2 0 1 0 0 1 1 2 0 0 0 0 0 11 1 1171.6561 P08133 P08133 221 231 ANXA6 Annexin A6 yes yes 2 0.013009 51.762 By matching By MS/MS 2 1 0.80578 0.81917 20.681 3 Median 0.79595 0.80561 2.3611 2 0 Median 1.2626 1.1513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14783000 7436300 7346800 4752900 2628400 2124500 10030000 4808000 5222300 0 0 0 0 0 0 0 0 0 0 0 0 34337 1898 36097 180225;180226;180227 182233 182233 1 TTGLVGLAVCNTPHER ______________________________ TGLVGLAVCNTPHERLRILYTKILDVLEEI K T T E R L 1 1 1 0 1 0 1 2 1 0 2 0 0 0 1 0 3 0 0 2 0 0 16 0 1723.8676 F8WAS3;Q16718 F8WAS3 8 23 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 2;3 4.6402E-08 83.54 By MS/MS By MS/MS 1 2 1.5422 1.0766 11.552 3 Plateau 1.1004 1.0766 NaN 1 1 Median 1.3946 1.1829 14.414 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12190000 4808600 7381700 1567600 761960 805660 10623000 4046600 6576000 0 0 0 0 0 0 0 0 0 0 0 0 34338 1093 36098 180228;180229;180230 182234;182235;182236 182235 3 TTGQVVAMK IGEGTYGVVYKGRHKTTGQVVAMKKIRLES YKGRHKTTGQVVAMKKIRLESEEEGVPSTA K T T M K K 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 9 0 933.49535 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 25 33 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 0.0032096 66.682 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0983 0.99192 9.5865 4 Median 1.0666 1.0324 NaN 1 1 Median 1.1309 0.95305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0397 0.87728 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3118 1.0932 NaN 1 0 Median 8348100 3859500 4488600 3532500 1650700 1881800 2087400 1012500 1074900 0 0 0 2229300 983770 1245500 0 0 0 498830 212560 286280 34339 1871 36099 180231;180232;180233;180234 182237;182238;182239 182239 3 TTGSPENEILTVHYLLEQIK QARDYLEHITSIGPRTTGSPENEILTVHYL ENEILTVHYLLEQIKLIEVQSNSLHKISVD R T T I K L 0 0 1 0 0 1 3 1 1 2 3 1 0 0 1 1 3 0 1 1 0 0 20 0 2284.1951 Q7Z2K6;E7ER77 Q7Z2K6 126 145 ERMP1 Endoplasmic reticulum metallopeptidase 1 yes no 3 0.0062264 23.447 By MS/MS 2 1.0586 0.92174 15.602 2 Median NaN NaN NaN 0 0 Median 1.0586 0.92174 15.602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6874200 3200900 3673300 0 0 0 6874200 3200900 3673300 0 0 0 0 0 0 0 0 0 0 0 0 34340 883 36100 180235;180236 182240 182240 1 TTGTPPDSSLVTYELHSRPEQDK QLEATKNSKGGSGGKTTGTPPDSSLVTYEL SLVTYELHSRPEQDKFSQAAKVAELEKRLT K T T D K F 0 1 0 2 0 1 2 1 1 0 2 1 0 0 3 3 4 0 1 1 0 0 23 1 2557.2296 Q13561;H0YI98;F8W1I6;F8VW18 Q13561 195 217 DCTN2 Dynactin subunit 2 yes no 4 0.026706 20.678 By MS/MS 1 1.9309 1.9603 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9309 1.9603 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17427000 5400600 12026000 0 0 0 0 0 0 17427000 5400600 12026000 0 0 0 0 0 0 0 0 0 34341 2824 36101 180237 182241 182241 1 TTGTPPDSSLVTYELHSRPEQDKFSQAAK QLEATKNSKGGSGGKTTGTPPDSSLVTYEL LHSRPEQDKFSQAAKVAELEKRLTELETAV K T T A K V 2 1 0 2 0 2 2 1 1 0 2 2 0 1 3 4 4 0 1 1 0 0 29 2 3189.5578 Q13561;H0YI98;F8W1I6;F8VW18 Q13561 195 223 DCTN2 Dynactin subunit 2 yes no 5 0.0089806 20.652 By MS/MS By MS/MS 1 1 0.65879 0.74144 23.276 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54208 0.62892 NaN 1 0 Median 0.80064 0.87408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15328000 8404400 6923700 0 0 0 0 0 0 10080000 5725600 4354900 5247700 2678900 2568900 0 0 0 0 0 0 34342 2824 36102 180238;180239 182242;182243 182243 2 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR FISMQAVLSLYATGRTTGVVLDSGDGVTHA VPIYEGFAMPHSIMRIDIAGRDVSRFLRLY R T T M R I 2 1 0 2 0 0 1 4 2 2 1 0 2 1 2 2 3 0 1 4 0 0 30 0 3156.5372 P42025;P61163;R4GMT0;A0A1B0GVS3 P61163 153 182 ACTR1B;ACTR1A Beta-centractin;Alpha-centractin no no 4 4.811E-06 37.344 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.84258 0.76159 13.348 5 Median 0.69409 0.6996 NaN 1 0 Median 0.84258 0.73204 NaN 1 0 Median 0.70323 0.76684 NaN 1 0 Median 0.8919 0.76159 NaN 1 0 Median 0.96762 0.98539 NaN 1 0 Median NaN NaN NaN 0 0 Median 19267000 10953000 8314400 2026600 1222300 804300 4879200 2529300 2349800 11733000 6891900 4840900 416780 209870 206900 212010 99549 112460 0 0 0 34343 2547;2304 36103 180240;180241;180242;180243;180244 182244;182245;182246;182247 182245 4 TTHFVEGGDAGNR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED KKTTHFVEGGDAGNREDQINRLIRRMN___ K T T N R E 1 1 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 1 0 0 13 0 1359.6167 P18124;A8MUD9 P18124 224 236 RPL7 60S ribosomal protein L7 yes no 2;3 0.0001818 67.997 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 3 1 2 1.2102 1.1688 13.623 9 Median 1.2203 1.1788 NaN 1 0 Median 1.1914 1.0109 1.0171 2 0 Median 1.2474 1.2251 18.753 3 0 Median 1.516 1.2724 NaN 1 0 Median 1.1409 1.1014 8.402 2 0 Median NaN NaN NaN 0 0 Median 5012900 2290600 2722400 945840 398590 547250 2345400 1004700 1340700 506680 256500 250180 566640 337110 229530 648400 293680 354720 0 0 0 34344 2056 36104 180245;180246;180247;180248;180249;180250;180251;180252;180253 182248;182249;182250;182251;182252;182253 182250 6 TTHFVEGGDAGNREDQINR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED VEGGDAGNREDQINRLIRRMN_________ K T T N R L 1 2 2 2 0 1 2 3 1 1 0 0 0 1 0 0 2 0 0 1 0 0 19 1 2114.973 P18124;A8MUD9 P18124 224 242 RPL7 60S ribosomal protein L7 yes no 2;3;4 3.699E-34 193.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 8 4 4 6 8 1.1444 1.1354 13.419 34 Median 1.154 1.2451 15.47 4 0 Linear 1.1444 1.0501 13.684 8 0 Median 1.0896 1.1373 8.8504 4 0 Median 1.3076 1.1713 7.3747 4 0 Median 0.95243 1.0288 19.156 6 0 Median 1.2538 1.1169 13.411 8 0 Median 471190000 214380000 256810000 101790000 49192000 52598000 118030000 52850000 65181000 39551000 18360000 21191000 81608000 35145000 46463000 49430000 24159000 25271000 80780000 34676000 46104000 34345 2056 36105 180254;180255;180256;180257;180258;180259;180260;180261;180262;180263;180264;180265;180266;180267;180268;180269;180270;180271;180272;180273;180274;180275;180276;180277;180278;180279;180280;180281;180282;180283;180284;180285;180286;180287 182254;182255;182256;182257;182258;182259;182260;182261;182262;182263;182264;182265;182266;182267;182268;182269;182270;182271;182272;182273;182274;182275;182276;182277;182278;182279;182280;182281;182282;182283;182284;182285;182286;182287;182288;182289;182290;182291;182292;182293;182294;182295;182296;182297;182298;182299;182300;182301;182302;182303;182304;182305 182287 52 TTHLIAKEEMIHNLQ DWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ TTHLIAKEEMIHNLQ_______________ K T T L Q - 1 0 1 0 0 1 2 0 2 2 2 1 1 0 0 0 2 0 0 0 0 0 15 1 1776.9193 O00232 O00232 442 456 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 3 0.00037286 42.317 By MS/MS 1 1.1985 1.1073 NaN 1 Median 1.1985 1.1073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18778000 8331400 10446000 18778000 8331400 10446000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34346 1449 36106 180288 182306;182307 182306 2 TTHYTPLACGSNPLKR QWPLLLKNFDKLNVRTTHYTPLACGSNPLK THYTPLACGSNPLKREIGDYIRTGFINLDK R T T K R E 1 1 1 0 1 0 0 1 1 0 2 1 0 0 2 1 3 0 1 0 0 0 16 1 1814.9098 O60832;C9IYT0;H7C0M1;H7C2Q9 O60832 66 81 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 3 0.0035539 41.542 By MS/MS 1 0.54656 0.56695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54656 0.56695 NaN 1 1 Median NaN NaN NaN 0 0 Median 3942100 2094100 1848000 0 0 0 0 0 0 0 0 0 0 0 0 3942100 2094100 1848000 0 0 0 34347 1634 36107 180289 182308 182308 1 TTIAQQVK LEALELLGNFKDKERTTIAQQVKGKKVWIG NFKDKERTTIAQQVKGKKVWIGIKKLLMLI R T T V K G 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 0 2 0 0 1 0 0 8 0 887.50763 I3L0N3;P46459;I3L2G1;K7EQD6 I3L0N3 687 694 NSF Vesicle-fusing ATPase yes no 2 0.0069529 69.093 By matching By MS/MS By matching 1 1 1 1.4407 1.373 14.202 3 Median 1.1851 1.2011 NaN 1 0 Median 1.5578 1.373 NaN 1 0 Median 1.4407 1.5954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4229500 1728700 2500800 987510 420070 567440 2680300 1086500 1593800 561670 222060 339600 0 0 0 0 0 0 0 0 0 34348 1272 36108 180290;180291;180292 182309;182310 182309 2 TTIEAIHGLMSQVIKDK KSEDKLAKATRDSCKTTIEAIHGLMSQVIK IEAIHGLMSQVIKDKLFNQINIS_______ K T T D K L 1 0 0 1 0 1 1 1 1 3 1 2 1 0 0 1 2 0 0 1 0 0 17 1 1883.0186 Q92905 Q92905 310 326 COPS5 COP9 signalosome complex subunit 5 yes yes 3 0.066383 9.5802 By MS/MS By matching 1 1 1.0051 0.94182 7.2519 2 Median 0.91795 0.89474 NaN 1 0 Median 1.1005 0.99137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7362500 3857400 3505100 3294100 1578100 1716100 4068400 2279300 1789000 0 0 0 0 0 0 0 0 0 0 0 0 34349 3565 36109 180293;180294 182311 182311 1 TTIENIQLPHTLLSR LAAANPIESQWNPKKTTIENIQLPHTLLSR TTIENIQLPHTLLSRFDLIFLLLDPQDEAY K T T S R F 0 1 1 0 0 1 1 0 1 2 3 0 0 0 1 1 3 0 0 0 0 0 15 0 1734.9628 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57;A0A3B3ITP6 A0A3B3IU45 579 593 MCM4 DNA replication licensing factor MCM4 yes no 2;3 0.018814 42.041 By MS/MS By MS/MS By MS/MS 1 1 2 0.75622 0.72458 8.9619 4 Median 0.81871 0.78939 NaN 1 0 Median 0.78013 0.67415 NaN 1 0 Median 0.67687 0.72184 10.738 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28623000 16412000 12211000 9000800 4866200 4134600 7937700 4493200 3444500 11684000 7052700 4631400 0 0 0 0 0 0 0 0 0 34350 441 36110 180295;180296;180297;180298 182312;182313;182314;182315;182316 182315 5 TTIFSPEGR ______________________________ RRYDSRTTIFSPEGRLYQVEYAMEAIGHAG R T T G R L 0 1 0 0 0 0 1 1 0 1 0 0 0 1 1 1 2 0 0 0 0 0 9 0 1006.5084 P25789;H0YMZ1;H0YL69;H0YMI6;H0YMA1;H0YLC2;H0YLS6 P25789 9 17 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type yes no 2 0.00094944 88.948 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 1 1 1 1 0.9997 0.84541 35.212 9 Median 1.0156 0.96247 14.327 3 1 Plateau 0.95736 0.79177 9.2699 2 0 Median 1.1086 1.0652 NaN 1 0 Median 1.2075 1.0085 NaN 1 0 Median 1.085 1.1767 NaN 1 0 Median 0.45648 0.35561 NaN 1 0 Median 35893000 15836000 20057000 11762000 4917800 6844200 8197400 3767400 4430000 11069000 4575500 6493700 1619300 634800 984460 2619800 1494900 1124900 625140 445450 179700 34351 2138 36111 180299;180300;180301;180302;180303;180304;180305;180306;180307 182317;182318;182319;182320;182321;182322;182323;182324;182325;182326 182323 10 TTIFTDAK ______________________________ ______________________________ K T T A K E 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 3 0 0 0 0 0 8 0 895.4651 B8ZZU8;I3L0M9;Q15370;A0A0B4J296 B8ZZU8 7 14 TCEB2 Transcription elongation factor B polypeptide 2 yes no 2 0.0035928 86.794 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1617 1.0682 6.9156 5 Median 1.164 1.0972 NaN 1 0 Median 1.22 1.026 5.7061 2 0 Median 1.1328 1.0872 NaN 1 0 Median 1.1617 0.93693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44287000 20502000 23785000 17566000 8186000 9380300 13167000 5692200 7474400 8241100 4111100 4129900 5313000 2512400 2800700 0 0 0 0 0 0 34352 651 36112 180308;180309;180310;180311;180312 182327;182328;182329;182330;182331 182329 5 TTIHEMFLSTLDPK SSTSLLKMAPSAEERTTIHEMFLSTLDPKT RTTIHEMFLSTLDPKTISFRSRVLPSNAVW R T T P K T 0 0 0 1 0 0 1 0 1 1 2 1 1 1 1 1 3 0 0 0 0 0 14 0 1631.8229 Q9Y305;H7C5Q2 Q9Y305 259 272 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 3 0.0035587 32.068 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0457 0.97438 25.763 4 Median 0.80632 0.75237 NaN 1 0 Median 1.3386 1.1807 NaN 1 0 Median 0.81692 0.80412 NaN 1 0 Median 1.3913 1.2411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15580000 8247900 7332200 8797400 4950800 3846600 624930 265510 359420 5374300 2805200 2569100 783520 226420 557100 0 0 0 0 0 0 34353 4400 36113 180313;180314;180315;180316 182332;182333;182334;182335 182333 4 TTIHQLTMQKEEDTSGYR ISLKNQFETEINITKTTIHQLTMQKEEDTS HQLTMQKEEDTSGYRAQIDNLTRENRSLSE K T T Y R A 0 1 0 1 0 2 2 1 1 1 1 1 1 0 0 1 4 0 1 0 0 0 18 1 2137.011 P15924 P15924 1375 1392 DSP Desmoplakin yes yes 3;4 1.8966E-19 171.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 2 5 1 2 1 0.85686 0.94502 19.186 13 Median 1.0694 1.1108 15.489 4 0 Median 1.0577 0.9812 3.7166 2 1 Median 0.67639 0.79589 13.057 4 1 Median NaN NaN NaN 0 0 Median 0.79903 0.90608 9.7624 2 0 Median 0.72769 0.63809 NaN 1 0 Median 92977000 47314000 45663000 37289000 18333000 18956000 19683000 9036600 10646000 17214000 10066000 7148200 554880 287890 266990 17461000 9213100 8247600 775850 377590 398260 34354 2021 36114 180317;180318;180319;180320;180321;180322;180323;180324;180325;180326;180327;180328;180329;180330;180331 182336;182337;182338;182339;182340;182341;182342;182343;182344;182345;182346;182347;182348;182349 182337 14 TTIIWDAHTGEAK WNKKGNFILSAGVDKTTIIWDAHTGEAKQQ DKTTIIWDAHTGEAKQQFPFHSAPALDVDW K T T A K Q 2 0 0 1 0 0 1 1 1 2 0 1 0 0 0 0 3 1 0 0 0 0 13 0 1441.7201 A0A0D9SF63;Q9BZK7;A0A1B0GVH3;A0A2R8YFW3;Q9BQ87;O60907 A0A0D9SF63 289 301 TBL1XR1;TBL1Y;TBL1X F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1Y;F-box-like/WD repeat-containing protein TBL1X yes no 2;3 1.4615E-09 105.86 By MS/MS By MS/MS 2 1 0.8789 0.88186 30.383 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8789 0.88186 30.383 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10276000 6185800 4090300 0 0 0 0 0 0 10276000 6185800 4090300 0 0 0 0 0 0 0 0 0 34355 265 36115 180332;180333;180334 182350;182351;182352 182352 3 TTILQSTGK VTRDIVSRERVWRTRTTILQSTGKNFSKNI RVWRTRTTILQSTGKNFSKNIFAILQSVKA R T T G K N 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 9 0 947.52876 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2;A0A2R8YHB3 Q6P1J9 235 243 CDC73 Parafibromin yes no 2 0.037899 34.253 By MS/MS 1 0.98426 0.99797 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98426 0.99797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1139400 366340 773020 0 0 0 0 0 0 1139400 366340 773020 0 0 0 0 0 0 0 0 0 34356 3150 36116 180335 182353 182353 1 TTISVAHLLAAR LAKVYQPKRSVLSPKTTISVAHLLAARQDL SPKTTISVAHLLAARQDLSKILRTSSGSIR K T T A R Q 3 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 2 0 0 1 0 0 12 0 1251.7299 Q8NCA5;E9PH82 Q8NCA5 261 272 FAM98A Protein FAM98A yes no 2;3 0.0026083 66.435 By matching By MS/MS 1 3 1.1326 1.2158 26.282 4 Median NaN NaN NaN 0 0 Median 1.1344 1.0183 NaN 1 0 Median 1.1307 1.2648 25.43 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7837500 2923500 4913900 0 0 0 211670 107740 103930 7625800 2815800 4810000 0 0 0 0 0 0 0 0 0 34357 3417 36117 180336;180337;180338;180339 182354;182355 182354 2 TTITMAHLLAAR IARIYQPKRYALSPKTTITMAHLLAAREDL SPKTTITMAHLLAAREDLSKIIRTSSGTSR K T T A R E 3 1 0 0 0 0 0 0 1 1 2 0 1 0 0 0 3 0 0 0 0 0 12 0 1297.7176 Q52LJ0 Q52LJ0 264 275 FAM98B Protein FAM98B yes yes 2;3 4.8954E-06 101.65 By MS/MS By matching By MS/MS By MS/MS 2 1 5 4 1.1753 1.1314 11.257 12 Median 1.025 1.0097 18.877 2 1 Median 1.1944 1.0558 NaN 1 0 Median 1.0907 1.0677 10.712 5 0 Median 1.3631 1.1721 5.9338 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159030000 71489000 87540000 9302800 4838200 4464600 463380 238190 225200 60006000 28891000 31115000 89257000 37521000 51736000 0 0 0 0 0 0 34358 3025 36118;36119 180340;180341;180342;180343;180344;180345;180346;180347;180348;180349;180350;180351 182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373;182374 182359 1655 19 TTITPEQLEILYEK GGNSGEDQHRDKRLRTTITPEQLEILYEKY RTTITPEQLEILYEKYLLDSNPTRKMLDHI R T T E K Y 0 0 0 0 0 1 3 0 0 2 2 1 0 0 1 0 3 0 1 0 0 0 14 0 1676.8873 E7EVZ1;Q86UP3 E7EVZ1 2584 2597 ZFHX4 Zinc finger homeobox protein 4 yes no 2 0.012463 32.523 By MS/MS 1 0.79373 0.86427 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79373 0.86427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2690500 1381400 1309000 0 0 0 0 0 0 2690500 1381400 1309000 0 0 0 0 0 0 0 0 0 34359 898 36120 180352 182375 182375 1 TTITPEQLEILYQK SGTGGEEPQRDKRLRTTITPEQLEILYQKY RTTITPEQLEILYQKYLLDSNPTRKMLDHI R T T Q K Y 0 0 0 0 0 2 2 0 0 2 2 1 0 0 1 0 3 0 1 0 0 0 14 0 1675.9033 Q15911 Q15911 2646 2659 ZFHX3 Zinc finger homeobox protein 3 yes yes 2 0.0024852 42.743 By MS/MS By matching 2 1 0.84244 0.76386 44.21 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64098 0.70026 62.118 2 0 Median 0.84244 0.76386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6135000 3394800 2740200 0 0 0 0 0 0 6069400 3362100 2707200 65616 32625 32991 0 0 0 0 0 0 34360 2977 36121 180353;180354;180355 182376;182377 182377 2 TTKTPEDGDYSYEIIEK KSPSDSGYSYETIGKTTKTPEDGDYSYEII KTPEDGDYSYEIIEKTTRTPEEGGYSYDIS K T T E K T 0 0 0 2 0 0 3 1 0 2 0 2 0 0 1 1 3 0 2 0 0 0 17 1 1987.9262 P46821 P46821 1929 1945 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 6.2484E-05 47.754 By MS/MS 1 0.76864 0.87225 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76864 0.87225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6827600 3629000 3198600 0 0 0 0 0 0 6827600 3629000 3198600 0 0 0 0 0 0 0 0 0 34361 2347 36122 180356 182378 182378 1 TTLALHHLSSGHLK VGLQESVRYIAVLKKTTLALHHLSSGHLKW KTTLALHHLSSGHLKWVEHLPESDSIHYQM K T T L K W 1 0 0 0 0 0 0 1 3 0 4 1 0 0 0 2 2 0 0 0 0 0 14 0 1513.8365 Q8N766 Q8N766 149 162 EMC1 ER membrane protein complex subunit 1 yes yes 3 0.00014021 68.262 By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 1.2701 1.1696 24.843 7 Median 1.241 1.1696 38.716 3 0 Median 1.2078 1.0373 12.681 2 0 Median 1.2701 1.319 NaN 1 0 Median 1.4048 1.2036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23761000 11138000 12623000 4480500 2286200 2194300 15232000 7219800 8012300 1043500 375790 667700 3004400 1256100 1748400 0 0 0 0 0 0 34362 3392 36123 180357;180358;180359;180360;180361;180362;180363 182379;182380;182381;182382;182383 182380 5 TTLEGHLAK LRDAQQQVKALGTERTTLEGHLAKVQAQAE ALGTERTTLEGHLAKVQAQAEQGQQELKNL R T T A K V 1 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 2 0 0 0 0 0 9 0 968.5291 Q9BW19 Q9BW19 186 194 KIFC1 Kinesin-like protein KIFC1 yes yes 2 0.056937 29.162 By matching By MS/MS By matching 1 1 1 1.1394 1.0239 19.528 3 Median 1.4207 1.4249 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96048 1.0239 NaN 1 0 Median 1.1394 1.0086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1996300 903660 1092600 246370 103540 142830 0 0 0 1467700 676110 791600 282220 124010 158200 0 0 0 0 0 0 34363 3860 36124 180364;180365;180366 182384 182384 1 TTLEQLLMR DLTGEVSNGAVAMAKTTLEQLLMRCATPLK AVAMAKTTLEQLLMRCATPLKDEERAEEIV K T T M R C 0 1 0 0 0 1 1 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 9 0 1103.6009 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1207 1215 TRRAP Transformation/transcription domain-associated protein yes no 2 0.0020175 75.109 By matching By matching By MS/MS By MS/MS 1 1 3 2 1.1969 1.16 10.016 7 Median 1.1616 1.16 NaN 1 0 Median 1.2461 1.0463 NaN 1 0 Median 1.0337 1.092 13.863 3 0 Median 1.4165 1.2309 5.9416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20932000 10310000 10623000 988910 401580 587330 1860500 857590 1002900 17412000 8791400 8620200 671240 259030 412200 0 0 0 0 0 0 34364 991 36125;36126 180367;180368;180369;180370;180371;180372;180373 182385;182386;182387 182386 346 3 TTLEVLQLFPINIK FSYCQGKSFAATISRTTLEVLQLFPINIKS RTTLEVLQLFPINIKSSNGGSKTSPALCQW R T T I K S 0 0 1 0 0 1 1 0 0 2 3 1 0 1 1 0 2 0 0 1 0 0 14 0 1627.9549 Q5T4S7;A0A0A0MSW0 Q5T4S7 2139 2152 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 1.9919E-06 156.83 By MS/MS By MS/MS 1 2 0.98632 0.91578 5.0862 3 Median 0.9684 0.95999 NaN 1 0 Median 1.0196 0.89117 3.8523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10538000 5286300 5252000 1370100 703460 666650 9168200 4582900 4585400 0 0 0 0 0 0 0 0 0 0 0 0 34365 3089 36127 180374;180375;180376 182388;182389;182390;182391 182390 4 TTLILPTQQVR SPSEASQHSMQSPQKTTLILPTQQVRRSSR SPQKTTLILPTQQVRRSSRIKPPGPTAVPK K T T V R R 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 0 3 0 0 1 0 0 11 0 1268.7452 Q9UQR0;B4DRC2 Q9UQR0 271 281 SCML2 Sex comb on midleg-like protein 2 yes no 2 0.00011565 141.48 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1.0103 0.9629 16.231 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78647 0.82182 15.021 4 0 Median 1.1923 1.0275 13.596 3 0 Median 0.91063 0.93554 17.433 2 0 Median 1.2693 1.0635 3.1831 2 0 Median 79010000 40792000 38218000 0 0 0 0 0 0 60868000 31753000 29115000 7935200 4012600 3922700 6263200 3079400 3183800 3942700 1946500 1996200 34366 4363 36128 180377;180378;180379;180380;180381;180382;180383;180384;180385;180386;180387 182392;182393;182394;182395;182396;182397;182398;182399 182392 8 TTLLAGDIEHPR NLDQIEVAKLDGTLRTTLLAGDIEHPRAIA TLRTTLLAGDIEHPRAIALDPRDGILFWTD R T T P R A 1 1 0 1 0 0 1 1 1 1 2 0 0 0 1 0 2 0 0 0 0 0 12 0 1321.699 Q07954 Q07954 1379 1390 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2;3 6.1328E-06 117.7 By MS/MS By MS/MS 2 1 1.413 1.1483 46.051 3 Plateau 0.52861 0.52363 11.449 2 1 Median 1.413 1.1483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27287000 14771000 12516000 17050000 10922000 6127700 10237000 3849100 6387800 0 0 0 0 0 0 0 0 0 0 0 0 34367 2733 36129 180388;180389;180390 182400;182401;182402 182400 3 TTLLEGFAGVEEAR KETTESLHGDISSLKTTLLEGFAGVEEARE KTTLLEGFAGVEEAREQNERNRDSGYLHLL K T T A R E 2 1 0 0 0 0 3 2 0 0 2 0 0 1 0 0 2 0 0 1 0 0 14 0 1491.7569 A0A494C1F2;P35658;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 758 771 NUP214 Nuclear pore complex protein Nup214 yes no 2 7.8822E-09 125.22 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 1.0565 1.0607 14.882 6 Median 0.82997 0.81924 NaN 1 0 Median 1.0742 0.89185 NaN 1 0 Median 1.0098 1.1026 3.9147 2 0 Median 1.1883 1.0489 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4372 1.2137 NaN 1 0 Median 16919000 7934800 8983900 2903900 1443400 1460500 1322600 645740 676890 11555000 5349500 6205900 946570 426260 520320 0 0 0 190250 69895 120360 34368 467 36130 180391;180392;180393;180394;180395;180396 182403;182404;182405;182406;182407;182408 182405 6 TTLLHMLK KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH GLDNAGKTTLLHMLKDDRLGQHVPTLHPTS K T T L K D 0 0 0 0 0 0 0 0 1 0 3 1 1 0 0 0 2 0 0 0 0 0 8 0 955.55247 Q9NR31;Q5SQT8;X1WI22;D6RAA2;D6RDB2;Q9Y6B6;D6RD69 Q9NR31 39 46 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b no no 2 0.0028873 90.777 By MS/MS By MS/MS By matching 1 1 1 1.2028 1.031 9.0459 3 Median 1.0452 0.9757 NaN 1 1 Median 1.2028 1.031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3876 1.1644 NaN 1 0 Median 22647000 10825000 11822000 12971000 6600400 6371000 7309300 3183200 4126100 0 0 0 0 0 0 0 0 0 2366000 1041300 1324700 34369 4077;4487 36131 180397;180398;180399 182409;182410 182409 2 TTLLHMLKDDR KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH NAGKTTLLHMLKDDRLGQHVPTLHPTSEEL K T T D R L 0 1 0 2 0 0 0 0 1 0 3 1 1 0 0 0 2 0 0 0 0 0 11 1 1341.7075 Q9NR31;Q5SQT8;X1WI22;D6RAA2;D6RDB2;Q9Y6B6;D6RD69 Q9NR31 39 49 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b no no 3 6.3257E-05 74.962 By MS/MS By MS/MS By matching 1 2 1 1.0369 1.0171 24.216 4 Median 1.0042 1.0424 NaN 1 0 Median 0.97021 0.9056 12.952 2 0 Median 1.4346 1.4753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88048000 42748000 45300000 74218000 36153000 38064000 11537000 5662700 5874600 2293600 932620 1361000 0 0 0 0 0 0 0 0 0 34370 4077;4487 36132 180400;180401;180402;180403 182411;182412;182413 182411 3 TTLLPGLLK VHISNPKTAEFQVARTTLLPGLLKTIAANR EFQVARTTLLPGLLKTIAANRKMPLPLKLF R T T L K T 0 0 0 0 0 0 0 1 0 0 4 1 0 0 1 0 2 0 0 0 0 0 9 0 954.61137 Q9NSD9 Q9NSD9 452 460 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0059298 56.122 By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1.0927 0.96668 16.938 6 Median 0.93831 0.89371 NaN 1 0 Median 1.2074 1.0066 NaN 1 0 Median 0.88495 0.91951 34.697 2 0 Median 1.0797 0.9283 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2387 1.0666 NaN 1 0 Median 38483000 18100000 20383000 6589300 3552300 3037000 27078000 12164000 14915000 3918700 1961800 1956900 785430 368130 417300 0 0 0 111290 54339 56947 34371 4102 36133 180404;180405;180406;180407;180408;180409 182414;182415;182416 182415 3 TTLPERPLTEVK AEKDKKKRKDEGKSRTTLPERPLTEVKAET KSRTTLPERPLTEVKAETRAEEAPEKKREK R T T V K A 0 1 0 0 0 0 2 0 0 0 2 1 0 0 2 0 3 0 0 1 0 0 12 1 1382.7769 Q96QC0 Q96QC0 168 179 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2;3 0.0027623 78.556 By MS/MS By MS/MS 3 4 0.87599 0.91417 21.344 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81439 0.92291 20.327 3 3 Plateau 0.99863 0.95969 14.526 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40783000 18508000 22274000 0 0 0 0 0 0 25053000 11868000 13184000 15730000 6640200 9090100 0 0 0 0 0 0 34372 3718 36134 180410;180411;180412;180413;180414;180415;180416 182417;182418;182419;182420;182421;182422;182423 182420 7 TTLPTFQSPEFSVTR ALSERDKVKFTVHTKTTLPTFQSPEFSVTR TTLPTFQSPEFSVTRQHEDFVWLHDTLIET K T T T R Q 0 1 0 0 0 1 1 0 0 0 1 0 0 2 2 2 4 0 0 1 0 0 15 0 1709.8625 Q9Y5X3;Q5QPE4 Q9Y5X3 53 67 SNX5 Sorting nexin-5 yes no 2 0.00031309 67.153 By MS/MS By MS/MS By matching 1 1 1 1.0082 0.89385 9.6932 3 Median 0.86654 0.83585 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0082 1.0118 NaN 1 0 Median 1.022 0.89385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13265000 6583300 6681300 8283100 4179100 4104000 0 0 0 4556700 2191300 2365400 424750 212900 211840 0 0 0 0 0 0 34373 4471 36135 180417;180418;180419 182424;182425;182426 182425 3 TTLQVDTLNAELAAER EEQSNMELLNDRFRKTTLQVDTLNAELAAE TLQVDTLNAELAAERSAAQKSDNARQQLER K T T E R S 3 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 3 0 0 1 0 0 16 0 1743.9003 P35580 P35580 1762 1777 MYH10 Myosin-10 yes yes 2;3 7.4957E-20 157.52 By MS/MS By MS/MS By MS/MS 2 1 1 1.1652 0.9695 23.57 4 Linear 0.82025 0.79531 33.267 2 0 Median NaN NaN NaN 0 0 Median 0.96636 1.0533 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.90812 0.93411 NaN 1 1 Median NaN NaN NaN 0 0 Median 57383000 28305000 29078000 28264000 13637000 14627000 0 0 0 19185000 8851900 10333000 0 0 0 9934500 5816600 4117900 0 0 0 34374 2245 36136 180420;180421;180422;180423 182427;182428;182429;182430;182431 182431 5 TTLSASGTGFGDK TAKQTGIETPNKSGKTTLSASGTGFGDKFK GKTTLSASGTGFGDKFKPVIGTWDCDTCLV K T T D K F 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 2 3 0 0 0 0 0 13 0 1240.5935 P49790 P49790 706 718 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.00010464 130.94 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1.1499 1.1757 26.096 5 Median NaN NaN NaN 0 0 Median 1.3473 1.1757 NaN 1 0 Median 1.1241 1.2327 1.1466 2 0 Median 1.154 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79784 0.66535 NaN 1 0 Median 12256000 5346200 6909400 0 0 0 1113800 445260 668530 8861000 3858900 5002000 1578600 655580 922990 0 0 0 702340 386480 315860 34375 2400 36137 180424;180425;180426;180427;180428 182432;182433;182434;182435 182432 4 TTLTAAITK PHVNVGTIGHVDHGKTTLTAAITKILAEGG HVDHGKTTLTAAITKILAEGGGAKFKKYEE K T T T K I 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 4 0 0 0 0 0 9 0 918.5386 P49411;H3BNU3 P49411 71 79 TUFM Elongation factor Tu, mitochondrial yes no 2 0.0027865 69.598 By MS/MS By MS/MS 2 1 1.3879 1.1808 35.255 3 Plateau 0.70771 0.67128 16.902 2 0 Median 1.3994 1.1923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20716000 7934300 12782000 4411700 2259100 2152700 16304000 5675200 10629000 0 0 0 0 0 0 0 0 0 0 0 0 34376 2382 36138 180429;180430;180431 182436;182437 182437 2 TTLTSDESVKDHTTAGR SSDEEGSQDESLDSKTTLTSDESVKDHTTA LTSDESVKDHTTAGRVVAGQIFLDSEESEL K T T G R V 1 1 0 2 0 0 1 1 1 0 1 1 0 0 0 2 5 0 0 1 0 0 17 1 1817.8755 Q9UBV2;G3V3B3 Q9UBV2 37 53 SEL1L Protein sel-1 homolog 1 yes no 3;4 1.7385E-06 83.966 By MS/MS By MS/MS 4 3 1.1182 1.1556 19.022 7 Median 1.0637 1.1005 8.6105 4 0 Median 1.4361 1.4342 31.083 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7413100 3283800 4129300 3247500 1458800 1788700 4165600 1824900 2340600 0 0 0 0 0 0 0 0 0 0 0 0 34377 4250 36139 180432;180433;180434;180435;180436;180437;180438 182438;182439;182440 182439 3 TTLVIMER IVKNSAKDCYPAVQKTTLVIMERLQQVLQM CYPAVQKTTLVIMERLQQVLQMESHIQSTS K T T E R L 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 2 0 0 1 0 0 8 0 961.52665 Q14974;J3KTM9;J3QKQ5 Q14974 550 557 KPNB1 Importin subunit beta-1 yes no 2 0.0024637 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 4 1.2888 1.1583 15.928 12 Median 1.1587 1.1058 1.3844 2 0 Median 1.3211 1.1392 0.14577 2 0 Median 1.2625 1.3477 NaN 1 0 Median 1.4038 1.2098 3.9436 2 1 Median 1.1869 1.2164 NaN 1 0 Median 1.3365 1.1097 28.641 4 0 Median 116840000 53098000 63743000 49409000 23101000 26308000 34203000 15072000 19131000 5045200 2242100 2803100 12937000 5791600 7145100 8894900 4078700 4816200 6351500 2812300 3539300 34378 2904 36140;36141 180439;180440;180441;180442;180443;180444;180445;180446;180447;180448;180449;180450 182441;182442;182443;182444;182445;182446;182447;182448;182449;182450;182451;182452;182453 182443 1593 13 TTMRPQSFYDGSHSCAR IQPGDIVIIDQFIDRTTMRPQSFYDGSHSC MRPQSFYDGSHSCARGVCHIPMAEPFCPKT R T T A R G 1 2 0 1 1 1 0 1 1 0 0 0 1 1 1 3 2 0 1 0 0 0 17 1 1999.8629 B4DUC8;Q13126;J3QSB7 B4DUC8 134 150 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 3 0.028793 15.766 By MS/MS 1 0.76911 0.70792 NaN 1 Median NaN NaN NaN 0 0 Median 0.76911 0.70792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2031900 1108600 923290 0 0 0 2031900 1108600 923290 0 0 0 0 0 0 0 0 0 0 0 0 34379 604 36142 180451 182454 182454 1 TTNAGPLHPYWPQHLR ______________________________ TNAGPLHPYWPQHLRLDNFVPNDRPTWHIL M T T L R L 1 1 1 0 0 1 0 1 2 0 2 0 0 0 3 0 2 1 1 0 0 0 16 0 1886.954 Q15125;C9J719;C9JJ78;A0A494C0F3 Q15125 2 17 EBP 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase yes no 2;3 3.7444E-20 190.36 By MS/MS By matching By matching By matching 3 3 2 1 0.78025 0.82454 35.77 9 Median 0.70735 0.67701 3.7352 3 0 Median 1.1088 0.95808 7.5197 3 0 Plateau 0.82881 0.89773 12.027 2 0 Median 0.37607 0.30591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 314770000 185600000 129180000 301220000 177990000 123230000 2697300 1375700 1321600 10665000 6123800 4541000 187370 106390 80981 0 0 0 0 0 0 34380 2930 36143 180452;180453;180454;180455;180456;180457;180458;180459;180460 182455;182456;182457;182458;182459;182460;182461;182462 182458 8 TTNEGLLYPNPAAQMLVGDSFAR ELLKSGFNPNQGFFKTTNEGLLYPNPAAQM PNPAAQMLVGDSFARHYYFLGRMLGKALYE K T T A R H 3 1 2 1 0 1 1 2 0 0 3 0 1 1 2 1 2 0 1 1 0 0 23 0 2464.2057 Q15386 Q15386 794 816 UBE3C Ubiquitin-protein ligase E3C yes yes 3 0.061447 6.8749 By MS/MS 1 0.69268 0.69916 NaN 1 Median 0.69268 0.69916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1040300 517590 522700 1040300 517590 522700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34381 2944 36144 180461 182463 182463 1 TTNFAGILSQGLR FKQLHNRRLLWHGSRTTNFAGILSQGLRIA SRTTNFAGILSQGLRIAPPEAPVTGYMFGK R T T L R I 1 1 1 0 0 1 0 2 0 1 2 0 0 1 0 1 2 0 0 0 0 0 13 0 1376.7412 P09874 P09874 866 878 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.3605E-41 222.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 14 8 5 4 1.2123 1.1479 22.659 37 Median 0.72314 0.7303 21.728 3 1 Median 1.2622 1.0609 37.265 3 1 Median 1.0856 1.1899 24.488 14 1 Median 1.3294 1.1291 13.061 8 1 Median 1.2715 1.3032 15.109 5 0 Median 1.3406 1.0976 8.3467 4 0 Median 762440000 351930000 410510000 26083000 12589000 13494000 9607200 4670400 4936700 537130000 251690000 285440000 118490000 52359000 66130000 54302000 23621000 30681000 16831000 6997300 9834100 34382 1922 36145 180462;180463;180464;180465;180466;180467;180468;180469;180470;180471;180472;180473;180474;180475;180476;180477;180478;180479;180480;180481;180482;180483;180484;180485;180486;180487;180488;180489;180490;180491;180492;180493;180494;180495;180496;180497;180498 182464;182465;182466;182467;182468;182469;182470;182471;182472;182473;182474;182475;182476;182477;182478;182479;182480;182481;182482;182483;182484;182485;182486;182487;182488;182489;182490;182491;182492;182493;182494;182495;182496;182497;182498;182499;182500;182501;182502;182503;182504;182505;182506;182507;182508;182509;182510;182511;182512;182513;182514;182515;182516 182492 53 TTNIELQGVPNDEVHPLLGVK QSSADGSQPPKKKPKTTNIELQGVPNDEVH QGVPNDEVHPLLGVKGDGKSKKKQAGRPKG K T T V K G 0 0 2 1 0 1 2 2 1 1 3 1 0 0 2 0 2 0 0 3 0 0 21 0 2272.2063 Q15291 Q15291 454 474 RBBP5 Retinoblastoma-binding protein 5 yes yes 3 1.1431E-06 44.238 By MS/MS 2 0.70441 0.70523 17.856 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70441 0.70523 17.856 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22531000 12994000 9536300 0 0 0 0 0 0 22531000 12994000 9536300 0 0 0 0 0 0 0 0 0 34383 2939 36146 180499;180500 182517;182518;182519;182520 182519 4 TTNPLDLAVMR TWRGRGREGLAPQRKTTNPLDLAVMRLAAL PQRKTTNPLDLAVMRLAALEQNVERRYLRE K T T M R L 1 1 1 1 0 0 0 0 0 0 2 0 1 0 1 0 2 0 0 1 0 0 11 0 1229.6438 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1549 1559 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0063851 64.04 By MS/MS 1 0.78309 0.82253 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78309 0.82253 NaN 1 1 Median NaN NaN NaN 0 0 Median 2941100 1612100 1329000 0 0 0 0 0 0 0 0 0 0 0 0 2941100 1612100 1329000 0 0 0 34384 1065 36147 180501 182521 182521 1 TTNVLGAVNKPLSSAGK LPPEMKSFFTPGKPKTTNVLGAVNKPLSSA NVLGAVNKPLSSAGKQSQTKSSRMETVSNA K T T G K Q 2 0 2 0 0 0 0 2 0 0 2 2 0 0 1 2 2 0 0 2 0 0 17 1 1655.9206 Q9NTI5;A9IYQ1 Q9NTI5 1127 1143 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes no 2;3 1.1766E-50 217.2 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 4 0.86246 0.88552 20.379 14 Median 1.2888 1.2772 9.9219 2 0 Median NaN NaN NaN 0 0 Median 0.76234 0.89417 2.5216 2 0 Median 1.1011 1.0289 7.8532 3 0 Median 0.78411 0.85198 10.664 3 0 Median 0.86246 0.76963 9.6343 4 0 Median 169960000 93220000 76737000 3232600 1489500 1743200 0 0 0 93736000 53213000 40522000 16754000 7800100 8954000 46361000 25506000 20855000 9873500 5210900 4662600 34385 4107 36148 180502;180503;180504;180505;180506;180507;180508;180509;180510;180511;180512;180513;180514;180515 182522;182523;182524;182525;182526;182527;182528;182529;182530;182531;182532;182533;182534;182535;182536 182523 15 TTPDVIFVFGFR VPKTEIREKLAKMYKTTPDVIFVFGFRTHF MYKTTPDVIFVFGFRTHFGGGKTTGFGMIY K T T F R T 0 1 0 1 0 0 0 1 0 1 0 0 0 3 1 0 2 0 0 2 0 0 12 0 1397.7343 E7ETK0;A0A2R8Y849;A0A2R8YD14;P62847;A0A2R8Y8A0 E7ETK0 50 61 RPS24 40S ribosomal protein S24 yes no 2 0.00062172 66.435 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.1881 0.99646 22.055 5 Median 1.6863 1.5801 NaN 1 0 Median 1.0981 0.92196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0407 1.1011 NaN 1 0 Median 1.2298 0.97003 3.8017 2 0 Median 17279000 7566100 9712800 397340 157340 240000 394290 191130 203160 0 0 0 0 0 0 3812500 1966100 1846400 12675000 5251600 7423200 34386 387 36149 180516;180517;180518;180519;180520 182537;182538;182539;182540 182539 4 TTPEADDWSNPSSEPR ERLPVFNKSAWRHYKTTPEADDWSNPSSEP TPEADDWSNPSSEPRDASKYKAKQ______ K T T P R D 1 1 1 2 0 0 2 0 0 0 0 0 0 0 3 3 2 1 0 0 0 0 16 0 1787.7598 Q15120 Q15120 382 397 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 2.1872E-05 83.617 By matching By MS/MS By MS/MS 1 1 1 0.80627 0.69523 35.313 3 Median NaN NaN NaN 0 0 Median 0.90574 0.79588 NaN 1 0 Median 0.40673 0.4081 NaN 1 0 Median 0.80627 0.69523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14331000 9087800 5242700 0 0 0 624930 274200 350730 5378600 3982000 1396700 8327000 4831700 3495300 0 0 0 0 0 0 34387 2929 36150 180521;180522;180523 182541;182542;182543 182541 3 TTPLKPSPLPVIPDTIK ENLRIKGPNAVQLVKTTPLKPSPLPVIPDT PLKPSPLPVIPDTIKEVIYDMLNALAAYHA K T T I K E 0 0 0 1 0 0 0 0 0 2 2 2 0 0 5 1 3 0 0 1 0 0 17 1 1816.071 Q7Z6Z7 Q7Z6Z7 1927 1943 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.00082764 35.176 By MS/MS By MS/MS By matching 1 2 1 0.45648 0.46536 31.146 4 Median 0.3778 0.41153 NaN 1 0 Median 0.66681 0.64442 28.653 2 0 Median 0.35594 0.40463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24486000 17281000 7204200 13246000 9906400 3340000 9338500 6203000 3135500 1900600 1171900 728690 0 0 0 0 0 0 0 0 0 34388 3253 36151 180524;180525;180526;180527 182544;182545 182544 2 TTPLNQESDR VTYLFKQLSRSTKKRTTPLNQESDRFLHIM STKKRTTPLNQESDRFLHIMQQHPEMIQQM R T T D R F 0 1 1 1 0 1 1 0 0 0 1 0 0 0 1 1 2 0 0 0 0 0 10 0 1159.5469 E7ESC6;Q9UIA9 E7ESC6 959 968 XPO7 Exportin-7 yes no 2 0.00092421 70.1 By MS/MS 1 1.0599 0.89555 NaN 1 Median NaN NaN NaN 0 0 Median 1.0599 0.89555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4718900 2317100 2401800 0 0 0 4718900 2317100 2401800 0 0 0 0 0 0 0 0 0 0 0 0 34389 885 36152 180528 182546;182547 182547 2 TTPNSGDVQVTEDAVR QSLSGKSTPQPPSGKTTPNSGDVQVTEDAV TPNSGDVQVTEDAVRRYLTRKPMTTKDLLK K T T V R R 1 1 1 2 0 1 1 1 0 0 0 0 0 0 1 1 3 0 0 3 0 0 16 0 1687.8013 P35269;M0QXD6 P35269 445 460 GTF2F1 General transcription factor IIF subunit 1 yes no 2 1.4148E-05 84.718 By matching By MS/MS By MS/MS 1 1 1 0.77848 0.81423 9.3824 3 Plateau NaN NaN NaN 0 0 Median 0.77848 0.67505 NaN 1 0 Median 0.7729 0.81423 NaN 1 0 Median 0.88151 0.73598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6940200 3795600 3144600 0 0 0 1020600 536380 484250 4036900 2324000 1712900 1882700 935250 947490 0 0 0 0 0 0 34390 2240 36153 180529;180530;180531 182548;182549;182550;182551;182552 182548 5 TTPNSGDVQVTEDAVRR QSLSGKSTPQPPSGKTTPNSGDVQVTEDAV PNSGDVQVTEDAVRRYLTRKPMTTKDLLKK K T T R R Y 1 2 1 2 0 1 1 1 0 0 0 0 0 0 1 1 3 0 0 3 0 0 17 1 1843.9024 P35269;M0QXD6 P35269 445 461 GTF2F1 General transcription factor IIF subunit 1 yes no 3 0.042098 11.12 By MS/MS 1 0.69905 0.68873 NaN 1 Median 0.69905 0.68873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6173100 3861300 2311900 6173100 3861300 2311900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34391 2240 36154 180532 182553 182553 1 TTPSVVAFTADGER EGKQAKVLENAEGARTTPSVVAFTADGERL RTTPSVVAFTADGERLVGMPAKRQAVTNPN R T T E R L 2 1 0 1 0 0 1 1 0 0 0 0 0 1 1 1 3 0 0 2 0 0 14 0 1449.71 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 86 99 HSPA9 Stress-70 protein, mitochondrial yes no 2 1.2583E-09 164.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 1 1 2 1.0583 0.96762 18.681 16 Median 1.0021 0.92843 21.955 5 1 Median 1.1914 1.0271 11.317 5 0 Median 1.0596 1.0885 18.422 2 1 Median 1.0621 0.89274 NaN 1 0 Median 1.329 1.3527 NaN 1 0 Median 1.2039 0.95724 35.045 2 0 Median 572060000 276070000 295990000 363940000 176500000 187430000 98997000 44815000 54182000 84479000 43803000 40676000 11798000 5658400 6139500 11700000 4727800 6972200 1147100 557910 589230 34392 2277 36155 180533;180534;180535;180536;180537;180538;180539;180540;180541;180542;180543;180544;180545;180546;180547;180548 182554;182555;182556;182557;182558;182559;182560;182561;182562;182563;182564;182565;182566;182567;182568;182569;182570;182571 182561 18 TTPSYVAFTDTER QHGKVEIIANDQGNRTTPSYVAFTDTERLI NRTTPSYVAFTDTERLIGDAAKNQVALNPQ R T T E R L 1 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 4 0 1 1 0 0 13 0 1486.694 A0A0G2JIW1;P0DMV9;P0DMV8;P11142;E9PKE3;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;P17066;P48741;Q53FA3;P34931;P54652 A0A0G2JIW1 38 50 HSPA1B;HSPA1A;HSPA8;HSPA6;HSPA7;HSPA1L;HSPA2 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1-like;Heat shock-related 70 kDa protein 2 no no 2;3 2.074E-15 187.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 12 11 10 9 6 1.1156 1.0041 25.423 62 Median 1.1322 1.0784 10.842 14 0 Median 1.0523 0.88638 8.7721 12 0 Median 1.1219 1.1151 19.603 11 2 Median 1.1086 0.94243 49.63 10 1 Median 1.1135 1.1305 14.751 9 0 Median 1.147 0.92153 6.4823 6 0 Median 5592500000 2622600000 2969800000 2159000000 1008300000 1150700000 1014000000 478310000 535700000 1607200000 752960000 854200000 326490000 155590000 170900000 420380000 197830000 222560000 65392000 29629000 35763000 34393 278;1950;2229;2035;2483 36156 180549;180550;180551;180552;180553;180554;180555;180556;180557;180558;180559;180560;180561;180562;180563;180564;180565;180566;180567;180568;180569;180570;180571;180572;180573;180574;180575;180576;180577;180578;180579;180580;180581;180582;180583;180584;180585;180586;180587;180588;180589;180590;180591;180592;180593;180594;180595;180596;180597;180598;180599;180600;180601;180602;180603;180604;180605;180606;180607;180608;180609;180610 182572;182573;182574;182575;182576;182577;182578;182579;182580;182581;182582;182583;182584;182585;182586;182587;182588;182589;182590;182591;182592;182593;182594;182595;182596;182597;182598;182599;182600;182601;182602;182603;182604;182605;182606;182607;182608;182609;182610;182611;182612;182613;182614;182615;182616;182617;182618;182619;182620;182621;182622;182623;182624;182625;182626;182627;182628;182629;182630;182631;182632;182633;182634;182635;182636;182637;182638;182639;182640;182641;182642;182643;182644;182645;182646;182647;182648;182649;182650;182651;182652;182653;182654;182655;182656;182657;182658;182659;182660;182661;182662;182663;182664;182665;182666;182667;182668;182669;182670;182671;182672;182673;182674;182675;182676;182677;182678;182679;182680;182681;182682 182601 111 TTQGLTALLLSLKK GCCQGRNWDPAQLSRTTQGLTALLLSLKKC RTTQGLTALLLSLKKCPMIRYQLSSEAAKR R T T K K C 1 0 0 0 0 1 0 1 0 0 5 2 0 0 0 1 3 0 0 0 0 0 14 1 1485.913 A0A087WU65;A0A2R8YE10;Q9NRW7;A0A2R8YD95;B7Z7G7 A0A087WU65 35 48 VPS45 Vacuolar protein sorting-associated protein 45 yes no 2 0.014901 33.886 By MS/MS 1 1.7137 1.6199 NaN 1 Median NaN NaN NaN 0 0 Median 1.7137 1.6199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 553930 201700 352230 0 0 0 553930 201700 352230 0 0 0 0 0 0 0 0 0 0 0 0 34394 27 36157 180611 182683 182683 1 TTQIINITMTK VFLDSGRKTRSARRRTTQIINITMTKKLDV ARRRTTQIINITMTKKLDVEEPDSANSSFY R T T T K K 0 0 1 0 0 1 0 0 0 3 0 1 1 0 0 0 4 0 0 0 0 0 11 0 1262.6904 A0A087WY61;Q14980 Q14980 1811 1821 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00097428 70.1 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1633 1.1205 1.4074 4 Median NaN NaN NaN 0 0 Median 1.2632 1.1193 NaN 1 1 Median 1.0135 1.1147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0712 1.1218 NaN 1 0 Median 1.3418 1.1499 NaN 1 1 Median 58540000 27071000 31469000 0 0 0 10225000 4236000 5988600 31549000 15219000 16330000 0 0 0 15224000 6996200 8228200 1542200 619520 922660 34395 2905;77 36158;36159 180612;180613;180614;180615 182684;182685;182686;182687 182685 37 4 TTQIPQYLYEGGISR NLDNAVLIGETGSGKTTQIPQYLYEGGISR TTQIPQYLYEGGISRQGIIAVTQPRRVAAI K T T S R Q 0 1 0 0 0 2 1 2 0 2 1 0 0 0 1 1 2 0 2 0 0 0 15 0 1724.8733 Q9H6R0 Q9H6R0 104 118 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.0051838 48.004 By MS/MS 1 0.86077 0.88621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86077 0.88621 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6765000 3670500 3094500 0 0 0 0 0 0 6765000 3670500 3094500 0 0 0 0 0 0 0 0 0 34396 3975 36160 180616 182688 182688 1 TTQITQYLAEAGYTSR DNQILIVIGETGSGKTTQITQYLAEAGYTS TQITQYLAEAGYTSRGKIGCTQPRRVAAMS K T T S R G 2 1 0 0 0 2 1 1 0 1 1 0 0 0 0 1 4 0 2 0 0 0 16 0 1801.8846 F5H658;Q14562 F5H658 595 610 DHX8 ATP-dependent RNA helicase DHX8 yes no 2 1.2084E-07 90.146 By MS/MS 1 0.91965 1.0051 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91965 1.0051 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2109200 931870 1177300 0 0 0 0 0 0 2109200 931870 1177300 0 0 0 0 0 0 0 0 0 34397 1040 36161 180617 182689 182689 1 TTQQIDLQGPGPWGFR ______________________________ TQQIDLQGPGPWGFRLVGGKDFEQPLAISR M T T F R L 0 1 0 1 0 3 0 3 0 1 1 0 0 1 2 0 2 1 0 0 0 0 16 0 1799.8955 O00151 O00151 2 17 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 2.7282E-08 138.99 By MS/MS By matching 2 2 0.76232 0.73364 11.254 4 Median 0.7417 0.73364 1.8781 2 0 Median 0.88 0.75107 19.259 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9172600 4989100 4183500 8724100 4742300 3981800 448480 246770 201710 0 0 0 0 0 0 0 0 0 0 0 0 34398 1442 36162 180618;180619;180620;180621 182690;182691;182692 182691 3 TTQVPQFILDDFIQNDR QNSVVIIRGATGCGKTTQVPQFILDDFIQN QVPQFILDDFIQNDRAAECNIVVTQPRRIS K T T D R A 0 1 1 3 0 3 0 0 0 2 1 0 0 2 1 0 2 0 0 1 0 0 17 0 2049.0167 Q08211 Q08211 418 434 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.1956E-10 98.439 By MS/MS By matching By MS/MS By MS/MS By MS/MS 5 1 3 3 3 1.0955 1.1158 10.015 15 Median 1.1383 1.1427 9.8461 5 0 Median 1.0701 0.95582 NaN 1 0 Median 1.0092 1.0695 2.8065 3 0 Median NaN NaN NaN 0 0 Median 1.0771 1.1358 11.821 3 0 Median 1.3571 1.2001 11.911 3 0 Median 34657000 15771000 18886000 8990700 3913100 5077600 68383 35245 33138 3954000 1926500 2027500 0 0 0 20485000 9406600 11078000 1159200 489730 669440 34399 2736 36163 180622;180623;180624;180625;180626;180627;180628;180629;180630;180631;180632;180633;180634;180635;180636 182693;182694;182695;182696;182697;182698;182699;182700;182701;182702;182703;182704;182705;182706;182707 182701 15 TTSAGTGGMWR RQRKNASCGTRSAGRTTSAGTGGMWRFYTE SAGRTTSAGTGGMWRFYTEDSPGLKVGPVP R T T W R F 1 1 0 0 0 0 0 3 0 0 0 0 1 0 0 1 3 1 0 0 0 0 11 0 1123.508 P60468 P60468 47 57 SEC61B Protein transport protein Sec61 subunit beta yes yes 2 0.00013404 111.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1.211 1.1688 8.9652 6 Median 1.1557 1.1219 NaN 1 0 Median 1.1903 1.0135 NaN 1 0 Median 1.2403 1.2584 NaN 1 0 Median 1.361 1.0695 NaN 1 0 Median 1.1869 1.2338 1.8522 2 0 Median NaN NaN NaN 0 0 Median 47811000 21897000 25914000 16869000 7776400 9092200 17867000 8643100 9223900 6046900 2557200 3489700 5075900 2040600 3035300 1952300 879610 1072700 0 0 0 34400 2525 36164 180637;180638;180639;180640;180641;180642 182708;182709;182710;182711;182712;182713;182714;182715 182711 8 TTSDYFLLQVLLK EVDWSSEKAKAALKRTTSDYFLLQVLLKFR KRTTSDYFLLQVLLKFRTDKGRDPSSDTYE R T T L K F 0 0 0 1 0 1 0 0 0 0 4 1 0 1 0 1 2 0 1 1 0 0 13 0 1539.8548 Q9UBE0;M0QZS6 Q9UBE0 236 248 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 2 9.3691E-07 100.15 By matching By MS/MS 1 1 1.0728 0.97837 5.8508 2 Median 1.0572 1.0197 NaN 1 0 Median 1.0886 0.93872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2795300 1178500 1616800 118340 47325 71019 2677000 1131200 1545800 0 0 0 0 0 0 0 0 0 0 0 0 34401 4237 36165 180643;180644 182716;182717 182717 2 TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR SRLESGMQNMSIHTKTTSGYAGGLSSAYGG GSSFGSGAGSSSFSRTSSSRAVVVKKIETR K T T S R T 3 1 0 0 0 0 0 10 0 0 4 0 0 2 1 13 3 0 3 0 0 0 40 0 3724.7129 P05787;CON__P05787 P05787 415 454 KRT8 Keratin, type II cytoskeletal 8 yes no 3 1.0848E-24 72.585 By matching By matching By MS/MS By MS/MS 1 1 3 4 0.9992 1.0004 23.779 9 Median 0.84596 0.82423 NaN 1 0 Median 1.5982 1.4254 NaN 1 0 Median 0.98442 0.99585 5.4523 3 0 Median NaN NaN NaN 0 0 Median 1.1853 1.1696 27.014 4 0 Median NaN NaN NaN 0 0 Median 35527000 17806000 17722000 450720 224530 226190 182770 65844 116930 30112000 15579000 14533000 0 0 0 4782400 1936600 2845900 0 0 0 + 34402 750 36166 180645;180646;180647;180648;180649;180650;180651;180652;180653 182718;182719;182720;182721;182722;182723;182724;182725;182726;182727;182728 182719 11 TTSNTLHYIHIEQLDK EFYADPGAEVKIEKRTTSNTLHYIHIEQLD TSNTLHYIHIEQLDKISESPSEIMESLTKM R T T D K I 0 0 1 1 0 1 1 0 2 2 2 1 0 0 0 1 3 0 1 0 0 0 16 0 1911.969 Q7Z6Z7 Q7Z6Z7 216 231 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 4 3.544E-05 54.281 By MS/MS By MS/MS 2 1 1.2893 1.2048 10.122 3 Median 1.1444 1.1141 12.81 2 1 Median 1.3541 1.2048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30101000 14529000 15572000 13971000 7173600 6797600 16130000 7355300 8774500 0 0 0 0 0 0 0 0 0 0 0 0 34403 3253 36167 180654;180655;180656 182729;182730 182730 2 TTSPLEEEER RKSHLARQQQEKEMKTTSPLEEEEREIKSS EKEMKTTSPLEEEEREIKSSQGLKEKSKSP K T T E R E 0 1 0 0 0 0 4 0 0 0 1 0 0 0 1 1 2 0 0 0 0 0 10 0 1189.5463 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 305 314 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.0068526 62.823 By MS/MS 1 0.74716 0.78465 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74716 0.78465 NaN 1 1 Median NaN NaN NaN 0 0 Median 2623300 1435700 1187600 0 0 0 0 0 0 0 0 0 0 0 0 2623300 1435700 1187600 0 0 0 34404 4560 36168 180657 182731 182731 1 TTSPPEVSGYSYEK RTPEEGGYSYDISEKTTSPPEVSGYSYEKT KTTSPPEVSGYSYEKTERSRRLLDDISNGY K T T E K T 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 3 2 0 2 1 0 0 14 0 1543.7042 P46821 P46821 1963 1976 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00027332 74.76 By MS/MS By MS/MS 1 1 0.92232 0.94847 0.27345 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88521 0.94663 NaN 1 0 Median 0.96099 0.9503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18653000 9960400 8692400 0 0 0 0 0 0 10596000 5740000 4856300 8056400 4220400 3836100 0 0 0 0 0 0 34405 2347 36169 180658;180659 182732;182733;182734;182735 182732 4 TTSSAIYMNLASHIQPGTVNR PKPGLQSSSSVPCQRTTSSAIYMNLASHIQ YMNLASHIQPGTVNRVSSPLPSPSAMTDAA R T T N R V 2 1 2 0 0 1 0 1 1 2 1 0 1 0 1 3 3 0 1 1 0 0 21 0 2260.127 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 295 315 GATAD2B Transcriptional repressor p66-beta yes no 3 9.76E-24 120.31 By MS/MS By MS/MS 3 1 0.68989 0.70047 22.546 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71756 0.73407 11.536 3 0 Median NaN NaN NaN 0 0 Median 0.48002 0.4942 NaN 1 1 Median NaN NaN NaN 0 0 Median 50892000 28957000 21935000 0 0 0 0 0 0 43173000 23850000 19323000 0 0 0 7719500 5107500 2612100 0 0 0 34406 311 36170;36171 180660;180661;180662;180663 182736;182737;182738;182739 182737 146 4 TTSSANNPNLMYQDECDRR HRGGGGGGGGRSRYRTTSSANNPNLMYQDE ANNPNLMYQDECDRRLRGVKDGGRRDSASY R T T R R L 1 2 3 2 1 1 1 0 0 0 1 0 1 0 1 2 2 0 1 0 0 0 19 1 2270.9644 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 569 587 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 3 9.7779E-07 50.831 By MS/MS By MS/MS 1 1 0.69307 0.76315 4.3539 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66314 0.74002 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72434 0.78701 NaN 1 0 Median NaN NaN NaN 0 0 Median 18839000 10021000 8817800 0 0 0 0 0 0 10173000 5277600 4895200 0 0 0 8666000 4743400 3922600 0 0 0 34407 343 36172 180664;180665 182740;182741;182742 182742 3 TTSSQWQSPPVVVILK TVTQKTDPKMLSKKRTTSSQWQSPPVVVIL TSSQWQSPPVVVILKDMESFATKVLQDFII R T T L K D 0 0 0 0 0 2 0 0 0 1 1 1 0 0 2 3 2 1 0 3 0 0 16 0 1768.9723 Q9UBD5 Q9UBD5 205 220 ORC3 Origin recognition complex subunit 3 yes yes 2 0.00013597 63.624 By MS/MS By matching 1 1 0.89379 0.84592 8.9386 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78057 0.7941 NaN 1 0 Median 1.0234 0.90111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10712000 5670000 5042000 0 0 0 0 0 0 10361000 5497900 4862900 351230 172120 179110 0 0 0 0 0 0 34408 4236 36173 180666;180667 182743;182744 182743 2 TTTAAAVASTGPSSR PASRSGSKSTQTVAKTTTAAAVASTGPSSR TTTAAAVASTGPSSRSPSTLLPKKPTAIKT K T T S R S 4 1 0 0 0 0 0 1 0 0 0 0 0 0 1 3 4 0 0 1 0 0 15 0 1376.6896 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 1955 1969 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 1.0895E-07 99.5 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 9 0.99735 0.88411 21.064 13 Median 0.71623 0.71739 NaN 1 0 Median 0.75062 0.63702 NaN 1 1 Median 1.0843 1.1605 22.472 2 0 Median 1.0263 0.88411 15.102 9 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18526000 9952000 8573600 961850 564800 397050 3883700 2237800 1646000 5335500 2790700 2544800 8344500 4358700 3985700 0 0 0 0 0 0 34409 895 36174 180668;180669;180670;180671;180672;180673;180674;180675;180676;180677;180678;180679;180680 182745;182746;182747;182748;182749;182750;182751;182752;182753;182754;182755;182756;182757;182758;182759;182760 182750 16 TTTESEVMK AEEIGIKATHIKLPRTTTESEVMKYITSLN HIKLPRTTTESEVMKYITSLNEDSTVHGFL R T T M K Y 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 3 0 0 1 0 0 9 0 1024.4747 P11586;V9GYY3;A0A384N5Y3;F5H2F4 P11586 75 83 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0038209 79.906 By MS/MS 1 1.265 1.0734 NaN 1 Median NaN NaN NaN 0 0 Median 1.265 1.0734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6987900 2991200 3996700 0 0 0 6987900 2991200 3996700 0 0 0 0 0 0 0 0 0 0 0 0 34410 1968 36175 180681 182761 182761 1 TTTGDVQVLGLVHTQK KGPLGCSERASICRRTTTGDVQVLGLVHTQ TTGDVQVLGLVHTQKLGVIGDKVVVTYSKG R T T Q K L 0 0 0 1 0 2 0 2 1 0 2 1 0 0 0 0 4 0 0 3 0 0 16 0 1695.9155 P11717;S4R328 P11717 2049 2064 IGF2R Cation-independent mannose-6-phosphate receptor yes no 2;3 3.5534E-05 57.019 By MS/MS By MS/MS By matching 2 4 1 1.2469 1.2002 50.423 7 Median 1.148 1.1239 9.2849 2 0 Median 1.861 1.6633 68.3 4 2 Linear 1.1589 1.2855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49705000 20843000 28862000 12151000 5149200 7002000 36381000 15099000 21282000 1172300 594620 577660 0 0 0 0 0 0 0 0 0 34411 1969 36176 180682;180683;180684;180685;180686;180687;180688 182762;182763;182764;182765;182766;182767 182762 6 TTTGLDSAVDPVQMK IYGLLKNPFLSVRFRTTTGLDSAVDPVQMK TTTGLDSAVDPVQMKNVTFEHVKGVEEAKQ R T T M K N 1 0 0 2 0 1 0 1 0 0 1 1 1 0 1 1 3 0 0 2 0 0 15 0 1561.7658 Q96I63;Q96TA2;R4GNA5;Q5T8D1 Q96I63 320 334 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes no 2 0.00037107 63.408 By MS/MS By matching 1 1 0.8782 0.79044 6.3512 2 Median 0.8768 0.82674 NaN 1 0 Median 0.87961 0.75572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13215000 6914100 6301200 9879900 5244600 4635300 3335500 1669600 1665900 0 0 0 0 0 0 0 0 0 0 0 0 34412 3677 36177 180689;180690 182768 182768 1 TTTGNKVFGALK QPGAFTCYLDAGLARTTTGNKVFGALKGAV LARTTTGNKVFGALKGAVDGGLSIPHSTKR R T T L K G 1 0 1 0 0 0 0 2 0 0 1 2 0 1 0 0 3 0 0 1 0 0 12 1 1235.6874 A0A2R8Y6J3;P46777;Q5T7N0 A0A2R8Y6J3 103 114 RPL5 60S ribosomal protein L5 yes no 2;3 0.0031468 47.561 By MS/MS By MS/MS By MS/MS 4 1 1 1.1178 1.1327 19.389 6 Median 1.215 1.253 23.29 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1093 0.97407 NaN 1 0 Median 0.99125 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median 29522000 12182000 17340000 22531000 9264700 13267000 0 0 0 0 0 0 1347700 716200 631460 5642700 2200900 3441800 0 0 0 34413 375 36178 180691;180692;180693;180694;180695;180696 182769;182770;182771;182772;182773;182774;182775 182771 7 TTTGPPHLVPPQPLPR EKSNSQVPQQSHFTKTTTGPPHLVPPQPLP TTGPPHLVPPQPLPRRGTQPVGSLELKSAC K T T P R R 0 1 0 0 0 1 0 1 1 0 2 0 0 0 6 0 3 0 0 1 0 0 16 0 1706.9468 Q9UNY4 Q9UNY4 482 497 TTF2 Transcription termination factor 2 yes yes 3 0.00092917 35.659 By MS/MS By matching 1 1 0.64092 0.62574 7.5759 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7747 0.66018 NaN 1 0 Median 0.53025 0.5931 NaN 1 0 Median NaN NaN NaN 0 0 Median 3190500 2100200 1090300 0 0 0 0 0 0 0 0 0 1369100 863150 505980 1821400 1237100 584300 0 0 0 34414 4352 36179 180697;180698 182776 182776 1 TTTGSYIANR AVQFDGGVVLGADSRTTTGSYIANRVTDKL GADSRTTTGSYIANRVTDKLTPIHDRIFCC R T T N R V 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 3 0 1 0 0 0 10 0 1082.5356 P28072;I3L3X7;A0A087X2I4 P28072 54 63 PSMB6 Proteasome subunit beta type-6;Proteasome subunit beta type yes no 2 4.3566E-05 138.54 By MS/MS By MS/MS 2 4 1.203 1.1272 26.496 6 Median 1.1754 1.1272 2.5001 2 0 Median 1.377 1.155 33.971 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16295000 7695900 8599300 9917300 4606000 5311300 6377800 3089800 3288000 0 0 0 0 0 0 0 0 0 0 0 0 34415 2161 36180 180699;180700;180701;180702;180703;180704 182777;182778;182779;182780;182781;182782 182778 6 TTTHVPPELGQIMDSETFEK LWETFLAQRQRRIYKTTTHVPPELGQIMDS PPELGQIMDSETFEKSRLYQLDKSTFSFWS K T T E K S 0 0 0 1 0 1 3 1 1 1 1 1 1 1 2 1 4 0 0 1 0 0 20 0 2259.0729 O75844 O75844 47 66 ZMPSTE24 CAAX prenyl protease 1 homolog yes yes 3 1.1956E-07 57.989 By MS/MS By MS/MS By MS/MS 2 1 1 0.92814 0.8519 13.636 4 Median 0.85731 0.84309 5.3319 2 0 Median 0.94861 0.82896 NaN 1 0 Median 0.97841 1.0929 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30288000 16667000 13621000 25909000 14521000 11388000 2434800 1284600 1150100 1944500 861660 1082900 0 0 0 0 0 0 0 0 0 34416 1700 36181 180705;180706;180707;180708 182783;182784;182785;182786 182783 4 TTTIAVEVK AVARIKKIYEEKKKKTTTIAVEVKKSQHKY EEKKKKTTTIAVEVKKSQHKYVIGPKGNSL K T T V K K 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 3 0 0 2 0 0 9 0 960.54916 Q00341;A0A024R4E5 Q00341 295 303 HDLBP Vigilin yes no 2 0.0054678 71.379 By MS/MS 1 2.9267 2.638 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.9267 2.638 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5049400 877540 4171900 0 0 0 0 0 0 0 0 0 5049400 877540 4171900 0 0 0 0 0 0 34417 4 36182 180709 182787 182787 1 TTTIAVEVKK AVARIKKIYEEKKKKTTTIAVEVKKSQHKY EKKKKTTTIAVEVKKSQHKYVIGPKGNSLQ K T T K K S 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 3 0 0 2 0 0 10 1 1088.6441 Q00341;A0A024R4E5 Q00341 295 304 HDLBP Vigilin yes no 2 0.00051514 87.308 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.4149 1.2996 39.924 4 Median 1.0893 1.0786 NaN 1 0 Median 1.396 1.2987 NaN 1 0 Median 2.3361 2.6613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4342 1.3005 NaN 1 0 Median 11140000 4425400 6714800 4199100 1878900 2320200 5615900 2152800 3463100 804170 151030 653140 0 0 0 0 0 0 521140 242700 278440 34418 4 36183 180710;180711;180712;180713 182788;182789;182790;182791;182792 182790 5 TTTLSGTAPAAGVVPSR DLSRPKSTSTSSMKKTTTLSGTAPAAGVVP TLSGTAPAAGVVPSRVKATPMPSRPSTTPF K T T S R V 3 1 0 0 0 0 0 2 0 0 1 0 0 0 2 2 4 0 0 2 0 0 17 0 1584.8471 E7EVA0;P27816;H7C4C5;H0Y2V1;B5MEG9;F8W9U4 E7EVA0 2017 2033 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 3.2602E-24 148.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 7 10 2 2 0.95556 0.8997 23.334 26 Median 0.50945 0.49082 19.488 3 2 Median 0.92202 0.77308 3.3279 2 2 Median 0.97939 0.97747 19.343 7 1 Median 1.0791 0.91011 11.114 10 1 Median 0.9931 1.0289 5.3819 2 2 Median 0.83397 0.68665 2.6056 2 0 Median 308160000 151520000 156640000 44938000 26680000 18258000 16275000 8081800 8193400 125260000 56891000 68372000 104120000 51042000 53074000 14560000 7260000 7300000 3013300 1569800 1443500 34419 895 36184 180714;180715;180716;180717;180718;180719;180720;180721;180722;180723;180724;180725;180726;180727;180728;180729;180730;180731;180732;180733;180734;180735;180736;180737;180738;180739 182793;182794;182795;182796;182797;182798;182799;182800;182801;182802;182803;182804;182805;182806;182807;182808;182809;182810;182811;182812;182813;182814;182815;182816;182817;182818;182819;182820;182821;182822;182823;182824;182825;182826;182827;182828;182829;182830;182831;182832;182833;182834 182796 42 TTTPGPSLSQGVSVDEK KNYCDPQGHPSTGLKTTTPGPSLSQGVSVD TPGPSLSQGVSVDEKLMPSAPVNTTTYVAD K T T E K L 0 0 0 1 0 1 1 2 0 0 1 1 0 0 2 3 3 0 0 2 0 0 17 0 1701.8421 O60934;A0A0C4DG07 O60934 335 351 NBN Nibrin yes no 2 4.3293E-12 127.02 By MS/MS By matching 3 2 0.83483 0.72472 20.494 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64412 0.66732 23.261 3 0 Median 0.96572 0.83865 20.647 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22153000 13227000 8925300 0 0 0 0 0 0 19992000 12143000 7849100 2161000 1084700 1076200 0 0 0 0 0 0 34420 1641 36185 180740;180741;180742;180743;180744 182835;182836;182837 182835 3 TTTTLIEPIR GGSGPPEKKLSREEKTTTTLIEPIRLGGIS SREEKTTTTLIEPIRLGGISSTEEMDLKVL K T T I R L 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 0 4 0 0 0 0 0 10 0 1143.6499 O75150;H3BP71;H3BQ99;H3BUL6;I3L332 O75150 28 37 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 2 0.0004183 88.948 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.2919 1.1379 28.164 4 Median 1.6376 1.6461 NaN 1 0 Median 1.5526 1.3534 NaN 1 0 Median 0.86996 0.9567 NaN 1 0 Median 1.075 0.91565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12753000 6357200 6396200 1621800 590280 1031600 660140 257400 402740 8717800 4560700 4157000 1753700 948790 804920 0 0 0 0 0 0 34421 1648 36186 180745;180746;180747;180748 182838;182839 182838 2 TTTTNTQVEGDDEAAFLER VEVNAQNSVPDEEAKTTTTNTQVEGDDEAA NTQVEGDDEAAFLERLARREERRQKRLQEA K T T E R L 2 1 1 2 0 1 3 1 0 0 1 0 0 1 0 0 5 0 0 1 0 0 19 0 2096.9498 E9PGZ1;E7EX44;Q05682;C9J813;C9JEK3 E9PGZ1 75 93 CALD1 Caldesmon yes no 2 6.7823E-14 109.22 By matching By MS/MS By matching 2 1 2 0.96693 0.9613 23.307 5 Median 1.0989 1.0969 18.668 2 0 Median NaN NaN NaN 0 0 Median 0.96693 1.0048 NaN 1 0 Median 0.86753 0.73783 12.407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11063000 5359500 5703300 3776100 1790100 1986000 0 0 0 5864300 2844600 3019700 1422400 724770 697650 0 0 0 0 0 0 34422 928 36187 180749;180750;180751;180752;180753 182840 182840 1 TTTVIFYPK EVKAYLDFREKGGYRTTTVIFYPKDPTTKP EKGGYRTTTVIFYPKDPTTKPFSVLLYIGT R T T P K D 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 3 0 1 1 0 0 9 0 1068.5855 Q8WUX2 Q8WUX2 89 97 CHAC2 Putative glutathione-specific gamma-glutamylcyclotransferase 2 yes yes 2 0.020926 38.792 By MS/MS 1 1.4975 1.4168 NaN 1 Median 1.4975 1.4168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2902200 1216300 1685800 2902200 1216300 1685800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34423 3498 36188 180754 182841 182841 1 TTTVNIGSISTADGSALVK KENCRPDGRELGEFRTTTVNIGSISTADGS NIGSISTADGSALVKLGNTTVICGVKAEFA R T T V K L 2 0 1 1 0 0 0 2 0 2 1 1 0 0 0 3 4 0 0 2 0 0 19 0 1833.9684 Q96B26 Q96B26 34 52 EXOSC8 Exosome complex component RRP43 yes yes 2 9.0216E-08 77.078 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1294 1.0212 8.427 4 Median 0.97726 0.89393 NaN 1 1 Median 1.2013 1.0204 NaN 1 0 Median 1.0618 1.022 NaN 1 0 Median 1.2943 1.0932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31070000 13872000 17198000 15623000 7219700 8403100 492350 210040 282300 12993000 5614900 7378200 1962300 827840 1134400 0 0 0 0 0 0 34424 3604 36189 180755;180756;180757;180758 182842;182843;182844 182843 3 TTTVVNVEGDALGAGILHHLNQK HDLPLILAVDWIVDRTTTVVNVEGDALGAG GDALGAGILHHLNQKATKKGEQELAEVKVE R T T Q K A 2 0 2 1 0 1 1 3 2 1 3 1 0 0 0 0 3 0 0 3 0 0 23 0 2386.2605 P43007 P43007 458 480 SLC1A4 Neutral amino acid transporter A yes yes 4 0.025613 13.188 By MS/MS 2 1.2344 1.0745 12.188 2 Median NaN NaN NaN 0 0 Median 1.2344 1.0745 12.188 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4021600 1516000 2505500 0 0 0 4021600 1516000 2505500 0 0 0 0 0 0 0 0 0 0 0 0 34425 2320 36190 180759;180760 182845 182845 1 TTVGVDGSLYK ILNRLRDNKGTPRLRTTVGVDGSLYKTHPQ PRLRTTVGVDGSLYKTHPQYSRRFHKTLRR R T T Y K T 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 1 2 0 1 2 0 0 11 0 1138.587 P19367 P19367 408 418 HK1 Hexokinase-1 yes yes 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.3178 1.2936 17.173 6 Median 1.099 1.0588 NaN 1 0 Median 1.3072 1.1245 21.676 2 1 Median 1.1575 1.2767 NaN 1 1 Median 1.6833 1.4594 4.9284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53004000 23550000 29454000 22541000 10340000 12201000 17789000 7542200 10247000 4334600 2344600 1990000 8339500 3323400 5016100 0 0 0 0 0 0 34426 2064 36191 180761;180762;180763;180764;180765;180766 182846;182847;182848;182849;182850;182851 182851 6 TTVIQDGIK LVRNLSEEGLLRLYRTTVIQDGIKKKVDLV LLRLYRTTVIQDGIKKKVDLVVHPSMDQND R T T I K K 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 0 2 0 0 1 0 0 9 0 973.54441 Q12789 Q12789 677 685 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.065873 63.565 By MS/MS 1 0.88691 0.98856 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88691 0.98856 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2933800 1582000 1351800 0 0 0 0 0 0 2933800 1582000 1351800 0 0 0 0 0 0 0 0 0 34427 2758 36192 180767 182852 182852 0 TTVISAVGTIVK LPAVVTVTTSASGSKTTVISAVGTIVKKAK GSKTTVISAVGTIVKKAKQ___________ K T T V K K 1 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 3 0 0 3 0 0 12 0 1187.7125 J3QQJ0;Q9UHR5 J3QQJ0 310 321 SAP30BP SAP30-binding protein yes no 2 0.003924 44.882 By MS/MS By matching By matching 1 1 1 1.2725 1.2809 14.513 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1879 1.2809 NaN 1 0 Median 1.2725 1.0115 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5746 1.3175 NaN 1 0 Median 3685100 1642300 2042800 0 0 0 0 0 0 3321000 1506800 1814200 55449 22777 32672 0 0 0 308630 112690 195940 34428 1343 36193 180768;180769;180770 182853 182853 1 TTVKDLSELGSVR GVLSRAQFEQLKDGKTTVKDLSELGSVRTL GKTTVKDLSELGSVRTLLQGSGCLAGIYLE K T T V R T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 2 2 0 0 2 0 0 13 1 1403.762 Q15149;H0YDN1 Q15149 3473 3485 PLEC Plectin yes no 2;3 0.019415 56.936 By MS/MS By matching 2 1 1.1176 1.2696 17.059 3 Median 1.2042 1.249 24.088 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1176 1.2696 NaN 1 0 Median NaN NaN NaN 0 0 Median 22198000 8936900 13261000 20159000 7778700 12380000 0 0 0 0 0 0 0 0 0 2039100 1158100 881010 0 0 0 34429 2933 36194 180771;180772;180773 182854;182855 182854 2 TTVLAMDQVPR PAQNPELLNKLSQRKTTVLAMDQVPRVTIA SQRKTTVLAMDQVPRVTIAQGYDALSSMAN K T T P R V 1 1 0 1 0 1 0 0 0 0 1 0 1 0 1 0 2 0 0 2 0 0 11 0 1229.6438 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7;D6RCR6 Q13423 172 182 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 2.2143E-08 138.98 By MS/MS By MS/MS 3 4 1.2642 1.0707 27.311 7 Median 0.82009 0.76978 46.265 3 0 Median 1.3007 1.0709 7.5058 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129640000 59692000 69949000 67073000 31769000 35305000 62567000 27923000 34644000 0 0 0 0 0 0 0 0 0 0 0 0 34430 2814 36195;36196 180774;180775;180776;180777;180778;180779;180780 182856;182857;182858;182859;182860;182861;182862;182863;182864;182865 182862 1509 10 TTVPQLLASVQR EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ EGRTTVPQLLASVQRWVQETKLLAQARVMV R T T Q R W 1 1 0 0 0 2 0 0 0 0 2 0 0 0 1 1 2 0 0 2 0 0 12 0 1311.751 P58107;A0A075B730 P58107 1170 1181 EPPK1 Epiplakin yes no 2 4.1172E-06 112.75 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.1806 1.1316 14.587 6 Median 1.1806 1.1319 0.24927 2 0 Median 1.2105 1.0153 15.56 2 0 Median 1.2246 1.3647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1585 0.95031 NaN 1 0 Median 51132000 23121000 28011000 31336000 14118000 17218000 19032000 8657400 10375000 547550 259390 288160 0 0 0 0 0 0 216680 86304 130380 34431 2520 36197 180781;180782;180783;180784;180785;180786 182866;182867;182868;182869;182870;182871 182871 6 TTVQQEPLESGAK QLLAPPPPSAPPGNKTTVQQEPLESGAKNK NKTTVQQEPLESGAKNKSTEQQQAAPEPDP K T T A K N 1 0 0 0 0 2 2 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1386.6991 P49750;F8VU51 P49750 258 270 YLPM1 YLP motif-containing protein 1 yes no 2 5.2437E-07 134.68 By MS/MS By MS/MS 1 1 0.78372 0.74218 3.3502 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69266 0.7248 NaN 1 0 Median 0.88675 0.75997 NaN 1 0 Median 9421000 6052300 3368700 0 0 0 0 0 0 0 0 0 0 0 0 7899100 5326500 2572500 1521900 725770 796150 34432 2395 36198 180787;180788 182872;182873;182874 182874 3 TTVVAQLK NLYSDDIPHALREKRTTVVAQLKQLQAETE HALREKRTTVVAQLKQLQAETEPIVKMFED R T T L K Q 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 8 0 858.51747 P60228;H0YBR5;E5RIT4 P60228 75 82 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0070981 68.485 By matching By MS/MS By MS/MS By matching By matching 1 1 1 2 1 1.2359 1.1087 23.114 6 Median 1.2358 1.1626 NaN 1 0 Median 1.236 1.0572 NaN 1 0 Median 1.252 1.2443 NaN 1 0 Median 1.1577 1.0007 31.374 2 0 Median NaN NaN NaN 0 0 Median 0.86964 0.73202 NaN 1 0 Median 19225000 8547500 10677000 5917200 2690600 3226600 5503800 2439200 3064600 2749800 1105100 1644700 3642700 1611700 2031000 0 0 0 1411300 700950 710320 34433 2524 36199 180789;180790;180791;180792;180793;180794 182875;182876;182877;182878 182876 4 TTYDQMYNDLLR LPGPAPDKPNVYDFKTTYDQMYNDLLRKDK DFKTTYDQMYNDLLRKDKELYTQNGILHML K T T L R K 0 1 1 2 0 1 0 0 0 0 2 0 1 0 0 0 2 0 2 0 0 0 12 0 1531.6977 Q9NP77 Q9NP77 59 70 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 yes yes 2 0.00059955 71.016 By MS/MS By matching By matching 2 1 1 0.9241 0.89054 30.023 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64462 0.67339 41.529 2 0 Median 1.1596 0.95484 NaN 1 0 Median 0.90768 0.87802 NaN 1 0 Median NaN NaN NaN 0 0 Median 8990500 4744000 4246500 0 0 0 0 0 0 7877400 4208600 3668800 555660 256490 299170 557520 278980 278550 0 0 0 34434 4042 36200 180795;180796;180797;180798 182879;182880 182879 2 TTYGGAAAAVR LKTSQLGDSPFYPGKTTYGGAAAAVRQSKL YPGKTTYGGAAAAVRQSKLRNTPYQAPVRR K T T V R Q 4 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 1 1 0 0 11 0 1036.5302 P49790 P49790 264 274 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.00035542 71.379 By MS/MS By matching 1 1 0.9366 0.89097 26.169 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96765 1.0721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90654 0.74046 NaN 1 0 Median 4383000 2038000 2345000 0 0 0 0 0 0 3508600 1607000 1901600 0 0 0 0 0 0 874410 431000 443410 34435 2400 36201 180799;180800 182881;182882 182882 2 TTYKYEMINK NILLYIQRTKSMFQRTTYKYEMINKQNEQM SMFQRTTYKYEMINKQNEQMHALLAIALTM R T T N K Q 0 0 1 0 0 0 1 0 0 1 0 2 1 0 0 0 2 0 2 0 0 0 10 1 1289.6326 B0QY89;Q9Y262;B0QY90 B0QY89 396 405 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 3 0.055854 26.118 By MS/MS 2 0.91436 0.86377 9.3843 2 Median 0.91436 0.86377 9.3843 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9565800 4746000 4819800 9565800 4746000 4819800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34436 554 36202 180801;180802 182883;182884 182883 2 TTYLEFIQQNEER ______________________________ ______________________________ M T T E R D 0 1 1 0 0 2 3 0 0 1 1 0 0 1 0 0 2 0 1 0 0 0 13 0 1669.7948 F5H365;Q15436;G3V5X8;G3V4Q2;G3V4V1;G3V1W4;G3V3G5;G3V2R6;G3V5K1 F5H365 2 14 SEC23A Protein transport protein Sec23A yes no 2 0.00094175 62.303 By MS/MS By matching By matching 1 1 1 0.98932 1.0417 6.304 3 Median 0.97618 0.96207 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98932 1.0417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3754 1.0896 NaN 1 0 Median 2776900 1363400 1413400 2243000 1102200 1140800 0 0 0 457490 233780 223710 0 0 0 0 0 0 76427 27452 48975 34437 1029 36203 180803;180804;180805 182885;182886 182886 2 TTYLVLDEADR RLIDFLECGKTNLRRTTYLVLDEADRMLDM NLRRTTYLVLDEADRMLDMGFEPQIRKIVD R T T D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 11 0 1294.6405 J3KTA4;P17844;J3QSF1;J3KRZ1 J3KTA4 242 252 DDX5 Probable ATP-dependent RNA helicase DDX5 yes no 2 0.00011507 132.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 2 4 3 1.188 1.0915 14.574 18 Median 1.1112 1.0483 31.724 2 0 Median 1.2093 1.0531 7.2619 3 0 Median 1.0529 1.0935 13.69 4 1 Median 1.3108 1.1123 0.25073 2 0 Median 1.164 1.1939 22.672 4 2 Median 1.417 1.2161 9.6196 3 0 Plateau 298030000 131370000 166660000 40699000 17158000 23541000 12976000 5463800 7512300 142210000 64698000 77510000 13610000 5205900 8403600 71459000 31708000 39752000 17076000 7137300 9938600 34438 1334 36204 180806;180807;180808;180809;180810;180811;180812;180813;180814;180815;180816;180817;180818;180819;180820;180821;180822;180823 182887;182888;182889;182890;182891;182892;182893;182894;182895;182896;182897;182898;182899;182900;182901;182902 182890 16 TVAAELAIFR TDCNVLLGAPTGSGKTVAAELAIFRVFNKY TGSGKTVAAELAIFRVFNKYPTSKAVYIAP K T V F R V 3 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1089.6182 Q8N3C0 Q8N3C0 1356 1365 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00038325 79.906 By MS/MS By MS/MS 1 3 1.0491 1.0971 19.319 4 Median 0.96135 0.97472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1449 1.2223 19.721 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4365700 2167000 2198800 2403200 1325400 1077800 0 0 0 1962500 841530 1121000 0 0 0 0 0 0 0 0 0 34439 3366 36205 180824;180825;180826;180827 182903;182904 182903 2 TVAELEAEK PTPKNIPQGAPVKQKTVAELEAEKAATITP APVKQKTVAELEAEKAATITPFRKTMSTAS K T V E K A 2 0 0 0 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 988.50769 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 454 462 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.0019932 75.378 By MS/MS 1 1.3775 1.2281 NaN 1 Median NaN NaN NaN 0 0 Median 1.3775 1.2281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24407000 9950600 14456000 0 0 0 24407000 9950600 14456000 0 0 0 0 0 0 0 0 0 0 0 0 34440 2814 36206 180828 182905;182906 182906 2 TVAEVQETLAEMIR ELFSEKHASLQNSQRTVAEVQETLAEMIRQ RTVAEVQETLAEMIRQHQKSQLCKSTANGP R T V I R Q 2 1 0 0 0 1 3 0 0 1 1 0 1 0 0 0 2 0 0 2 0 0 14 0 1588.8131 Q8TEQ6 Q8TEQ6 1373 1386 GEMIN5 Gem-associated protein 5 yes yes 2 4.4548E-08 113.63 By MS/MS By matching By matching 2 1 1 0.99868 0.95541 8.8733 4 Median 0.99868 0.96934 1.266 2 0 Median 1.112 0.95015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97315 0.80762 NaN 1 0 Median 10560000 4825900 5734200 6071900 2717500 3354400 4363500 2047700 2315800 0 0 0 0 0 0 0 0 0 124630 60674 63952 34441 3478 36207 180829;180830;180831;180832 182907;182908;182909 182909 3 TVAFPSTHPPR RLFQPVQYGQKPEGRTVAFPSTHPPRTAAP PEGRTVAFPSTHPPRTAAPTTASAAPQGPL R T V P R T 1 1 0 0 0 0 0 0 1 0 0 0 0 1 3 1 2 0 0 1 0 0 11 0 1208.6302 Q96L91 Q96L91 1477 1487 EP400 E1A-binding protein p400 yes yes 3 0.00056759 55.401 By MS/MS By MS/MS 1 1 1.2594 1.2116 44.572 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83191 0.88403 NaN 1 0 Median 1.9065 1.6604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10032000 4823800 5208500 0 0 0 0 0 0 7113900 3783600 3330200 2918500 1040200 1878300 0 0 0 0 0 0 34442 3700 36208 180833;180834 182910;182911;182912 182911 2 TVAGGAWTYNTTSAVTVK KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV GGAWTYNTTSAVTVKSAIRRLKELKDQ___ K T V V K S 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 5 1 1 3 0 0 18 0 1825.921 C9J4Z3;P61513 C9J4Z3 39 56 RPL37A 60S ribosomal protein L37a yes no 2 2.0479E-06 82.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1 1.1825 1.0769 11.852 8 Median 1.1245 1.0148 11.936 3 0 Median 1.3052 1.1034 14.731 2 0 Median 1.1643 1.1008 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.201 1.2944 NaN 1 1 Median 1.2816 1.0535 NaN 1 0 Median 135740000 62518000 73225000 58526000 27338000 31188000 4353500 1949600 2403800 55703000 25697000 30007000 0 0 0 5848500 2618600 3229800 11312000 4914700 6396800 34443 676 36209 180835;180836;180837;180838;180839;180840;180841;180842 182913;182914;182915;182916;182917;182918;182919;182920;182921;182922;182923;182924 182916 12 TVAGGGLETISNLK LPLFQEAEDKNRLLRTVAGGGLETISNLKA RTVAGGGLETISNLKAKWDKFELMMESHQL R T V L K A 1 0 1 0 0 0 1 3 0 1 2 1 0 0 0 1 2 0 0 1 0 0 14 0 1358.7405 Q8NCM8;A0A3B3ISP9 Q8NCM8 999 1012 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes no 2 7.077E-07 122.51 By MS/MS By MS/MS 1 2 1.2764 1.1184 19.499 3 Median 0.82008 0.82264 NaN 1 0 Median 1.3121 1.1493 3.8611 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32168000 15496000 16672000 18859000 10045000 8813900 13309000 5451300 7858100 0 0 0 0 0 0 0 0 0 0 0 0 34444 3418 36210 180843;180844;180845 182925;182926;182927;182928 182926 4 TVAGQDAVIVLLGTR HVVVGDVLQAADVDKTVAGQDAVIVLLGTR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN K T V T R N 2 1 0 1 0 1 0 2 0 1 2 0 0 0 0 0 2 0 0 3 0 0 15 0 1511.8671 P30043;M0R192;A0A2R8YEP4;A0A2R8Y7Y9;M0QZL1 P30043 64 78 BLVRB Flavin reductase (NADPH) yes no 2;3 6.7656E-06 86.313 By MS/MS By matching By matching 2 2 1 1.0229 0.96048 26.701 5 Median 1.0111 0.95232 1.2062 2 0 Median NaN NaN NaN 0 0 Median 0.84987 0.793 31.384 2 0 Median 1.6559 1.3458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7310300 3590900 3719400 6829400 3372200 3457200 0 0 0 328730 153410 175310 152170 65357 86814 0 0 0 0 0 0 34445 2180 36211 180846;180847;180848;180849;180850 182929;182930;182931 182929 3 TVAIPSGENQINQIALNPTGTFLYAASGNAVR GQVTLGDACSASTSRTVAIPSGENQINQIA PTGTFLYAASGNAVRMWDLKRFQSTGKLTG R T V V R M 5 1 4 0 0 2 1 3 0 3 2 0 0 1 2 2 3 0 1 2 0 0 32 0 3286.6946 A0A1B0GV47;Q7Z4S6;H0YI78;H0YHT2 A0A1B0GV47 1423 1454 KIF21A Kinesin-like protein KIF21A yes no 3 0.072848 4.857 By MS/MS 1 0.77769 0.776 NaN 1 Median 0.77769 0.776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 656860 307640 349220 656860 307640 349220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34446 325 36212 180851 182932 182932 1 TVAIYSEQDTGQMHR IAIRVFRACTELGIRTVAIYSEQDTGQMHR TVAIYSEQDTGQMHRQKADEAYLIGRGLAP R T V H R Q 1 1 0 1 0 2 1 1 1 1 0 0 1 0 0 1 2 0 1 1 0 0 15 0 1734.7995 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 63 77 PC Pyruvate carboxylase, mitochondrial yes no 3 5.7834E-10 102.73 By matching By MS/MS 1 1 1.2293 1.1062 3.291 2 Median 1.1719 1.1323 NaN 1 0 Median 1.2895 1.0808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14962000 6279000 8683400 6495600 2775600 3720000 8466800 3503400 4963400 0 0 0 0 0 0 0 0 0 0 0 0 34447 1967 36213 180852;180853 182933;182934 182933 2 TVALDGTLFQK EDARRIAFGGHQRHKTVALDGTLFQKSGVI QRHKTVALDGTLFQKSGVISGGASDLKAKA K T V Q K S 1 0 0 1 0 1 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 11 0 1191.6499 Q14683;G8JLG1 Q14683 638 648 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00015337 82.749 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 2 1.2501 1.0709 8.8472 9 Median 1.0998 1.0645 NaN 1 0 Median 1.3845 1.2094 NaN 1 0 Median 0.94988 1.0117 NaN 1 0 Median 1.4229 1.2445 6.1245 2 0 Median 0.98276 1.0298 3.8194 2 0 Median 1.2905 1.1083 4.8627 2 0 Median 83579000 42149000 41430000 9153200 4976400 4176800 2673000 1146100 1526800 26516000 13278000 13238000 3613900 1530800 2083100 35957000 18703000 17254000 5666100 2514400 3151600 34448 2889 36214 180854;180855;180856;180857;180858;180859;180860;180861;180862 182935;182936;182937;182938;182939;182940;182941;182942;182943;182944 182940 10 TVALWDLR NPYSEFILATGSADKTVALWDLRNLKLKLH ATGSADKTVALWDLRNLKLKLHTFESHKDE K T V L R N 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 8 0 972.53927 Q09028;H0YF10;H0YCT5;H0YDK2;H0YEU5;Q16576;E9PC52;Q5JP02 Q16576 296 303 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.0055542 75.109 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 5 1 1.1906 1.0783 15.56 19 Median 1.1806 1.1202 15.103 3 0 Median 1.3416 1.1268 3.1249 3 0 Plateau 1.0771 1.0352 11.574 4 0 Median 1.279 1.0783 3.9924 3 0 Median 1.0432 1.0731 17.61 5 0 Median 2.3115 1.7566 NaN 1 0 Median 559650000 259740000 299910000 19725000 8641200 11084000 20820000 8481400 12338000 373240000 176360000 196880000 74173000 34859000 39314000 66288000 30381000 35907000 5397700 1018900 4378800 34449 2746;2990 36215 180863;180864;180865;180866;180867;180868;180869;180870;180871;180872;180873;180874;180875;180876;180877;180878;180879;180880;180881 182945;182946;182947;182948;182949;182950;182951;182952;182953;182954;182955;182956;182957;182958;182959;182960;182961;182962;182963;182964 182957 20 TVANLLSGK AGKTGNSMPHPATGKTVANLLSGKSPRKSA HPATGKTVANLLSGKSPRKSAEPSANTTLV K T V G K S 1 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 901.52328 E7ETY2;A0A3B3IS06;H0Y8Y7;A0A2R8Y857;Q13428 Q13428 147 155 TCOF1 Treacle protein no no 2 0.00079617 97.431 By MS/MS By MS/MS By matching 2 2 1 1.1389 1.0923 17.233 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9171 0.965 24.434 2 0 Median 1.3074 1.1536 16.208 2 1 Median NaN NaN NaN 0 0 Median 1.3226 1.0923 NaN 1 0 Median 52079000 25073000 27006000 0 0 0 0 0 0 42526000 21200000 21325000 7601500 3180700 4420800 0 0 0 1951800 692280 1259500 34450 2816;891 36216 180882;180883;180884;180885;180886 182965;182966;182967;182968;182969 182966 5 TVAQSQQLETNSQR DAGNSDRVVIQEMLKTVAQSQQLETNSQRD KTVAQSQQLETNSQRDFKVVLLTEVDKLTK K T V Q R D 1 1 1 0 0 4 1 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1588.7805 P40938 P40938 114 127 RFC3 Replication factor C subunit 3 yes yes 2 0.00016547 79.633 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.181 1.0974 12.91 6 Median 0.89726 0.91825 NaN 1 0 Median 1.177 1.0039 NaN 1 0 Median 1.0876 1.0974 5.3305 2 0 Median 1.4982 1.3054 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3899 1.2169 NaN 1 0 Median 5589200 2692100 2897100 997220 528610 468610 1511500 825250 686220 1977700 856460 1121200 612300 246400 365900 0 0 0 490480 235350 255140 34451 2294 36217 180887;180888;180889;180890;180891;180892 182970;182971;182972;182973;182974;182975;182976;182977;182978;182979;182980 182975 11 TVASQPISTQTLVEGENDEQSSTDQASAIK QMNFLNQLTSVFNPRTVASQPISTQTLVEG ENDEQSSTDQASAIKTKNVFIAQNVASLQE R T V I K T 3 0 1 2 0 4 3 1 0 2 1 1 0 0 1 5 4 0 0 2 0 0 30 0 3133.4899 Q5T4S7 Q5T4S7 205 234 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 5.9468E-30 84.515 By MS/MS By matching 2 2 0.96344 0.96369 23.993 4 Linear 0.89844 0.8826 8.7588 2 0 Median 0.68327 0.59941 12.379 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25308000 12381000 12927000 23648000 11465000 12183000 1660000 916430 743580 0 0 0 0 0 0 0 0 0 0 0 0 34452 3089 36218 180893;180894;180895;180896 182981 182981 1 TVASSLGQIPMQR QAHVSGFKHKNQSPKTVASSLGQIPMQRQP PKTVASSLGQIPMQRQPIQKDSTTLED___ K T V Q R Q 1 1 0 0 0 2 0 1 0 1 1 0 1 0 1 2 1 0 0 1 0 0 13 0 1386.7289 D6RJ07;Q9UL40;B7Z4J8;B7Z4N4 D6RJ07 286 298 ZNF346 Zinc finger protein 346 yes no 2 1.3987E-06 150.08 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 2 0.9399 0.85261 39.79 8 Median 1.5305 1.4466 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82972 0.80914 42.274 3 0 Plateau 0.97036 0.85187 7.5218 2 0 Median 1.012 1.0425 6.2034 2 1 Median NaN NaN NaN 0 0 Median 46722000 23192000 23530000 5171800 1941600 3230200 0 0 0 17902000 9816700 8085700 3597200 1874300 1723000 20050000 9559700 10491000 0 0 0 34453 829 36219;36220 180897;180898;180899;180900;180901;180902;180903;180904 182982;182983;182984;182985;182986;182987;182988;182989 182985 304 8 TVASTAMNSQSSR ALDTVSCLEQGNNSRTVASTAMNSQSSRSH SRTVASTAMNSQSSRSHAIFTISLEQRKKS R T V S R S 2 1 1 0 0 1 0 0 0 0 0 0 1 0 0 4 2 0 0 1 0 0 13 0 1338.6198 O95239;Q2VIQ3 O95239 199 211 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.00035974 75.695 By MS/MS By MS/MS By matching 1 2 1 1.0343 0.98678 11.402 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93135 1.0201 NaN 1 0 Median 1.1558 0.99973 6.5327 2 0 Median NaN NaN NaN 0 0 Median 0.9811 0.81226 NaN 1 0 Median 3830700 1702600 2128100 0 0 0 0 0 0 2383000 1101100 1281900 1086200 437970 648240 0 0 0 361480 163500 197980 34454 1757 36221 180905;180906;180907;180908 182990;182991;182992;182993 182992 4 TVATFILQK PLCLRIMESGSELSKTVATFILQKILLDDT GSELSKTVATFILQKILLDDTGLAYICQTY K T V Q K I 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 9 0 1019.6015 Q92600 Q92600 180 188 RQCD1 Cell differentiation protein RCD1 homolog yes yes 2 0.006571 54.157 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.1425 1.0031 14.773 6 Median 1.0382 0.96674 7.5116 2 0 Median 1.1937 1.0182 NaN 1 0 Median 0.99595 0.93764 NaN 1 0 Median 1.1993 0.98819 NaN 1 0 Median 1.3499 1.3782 NaN 1 0 Median NaN NaN NaN 0 0 Median 25008000 11737000 13271000 15088000 7105500 7982100 1303800 538900 764880 6296000 3153500 3142500 463220 192680 270540 1857000 746310 1110700 0 0 0 34455 3542 36222 180909;180910;180911;180912;180913;180914 182994;182995;182996;182997 182996 4 TVATLSILGTR ALRTLVGICSEHQSRTVATLSILGTRRVVS HQSRTVATLSILGTRRVVSILGVESQAVSL R T V T R R 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 3 0 0 1 0 0 11 0 1130.6659 A0A1W2PNX8;Q9H3U1 A0A1W2PNX8 370 380 UNC45A Protein unc-45 homolog A yes no 2 0.00012074 136.57 By MS/MS By matching By matching By matching 1 1 1 1 1.2613 1.1553 18.352 4 Median 1.2055 1.1656 NaN 1 0 Median 1.3196 1.145 NaN 1 0 Median 1.4472 1.5503 NaN 1 0 Median 1.1928 1.0024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9215500 3956100 5259400 5162200 2340100 2822100 2469000 1081500 1387500 1299500 398160 901380 284740 136340 148410 0 0 0 0 0 0 34456 335 36223 180915;180916;180917;180918 182998;182999 182999 2 TVATPLNQVANPNSAIFGGAR EEERAQRPRLQLKPRTVATPLNQVANPNSA NQVANPNSAIFGGARPREEVVQKEQE____ R T V A R P 4 1 3 0 0 1 0 2 0 1 1 0 0 1 2 1 2 0 0 2 0 0 21 0 2097.0967 Q15056 Q15056 217 237 EIF4H Eukaryotic translation initiation factor 4H yes yes 2;3 4.2863E-25 132.86 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 3 1 2 2 1 1 0.78717 0.74381 9.9561 10 Median 0.78324 0.74451 7.2996 3 1 Median 0.77451 0.66096 NaN 1 0 Median 0.77603 0.74548 0.44929 2 0 Median 0.794 0.65154 1.4583 2 0 Median 0.84456 0.81984 NaN 1 0 Median 1.018 0.84091 NaN 1 0 Median 89035000 50023000 39012000 51757000 30017000 21740000 811460 461430 350030 34157000 18190000 15968000 1327200 720730 606450 777130 479320 297810 204950 154800 50146 34457 2922 36224 180919;180920;180921;180922;180923;180924;180925;180926;180927;180928 183000;183001;183002;183003;183004;183005;183006;183007;183008;183009;183010;183011;183012 183002 13 TVATPLNQVANPNSAIFGGARPR EEERAQRPRLQLKPRTVATPLNQVANPNSA VANPNSAIFGGARPREEVVQKEQE______ R T V P R E 4 2 3 0 0 1 0 2 0 1 1 0 0 1 3 1 2 0 0 2 0 0 23 1 2350.2506 Q15056 Q15056 217 239 EIF4H Eukaryotic translation initiation factor 4H yes yes 2;3 4.574E-66 209.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 2 3 1 0.68605 0.65944 18.413 11 Median 0.64151 0.67904 26.117 4 1 Median 0.68605 0.58264 NaN 1 0 Median 0.65313 0.67719 10.401 2 0 Median 0.71232 0.63783 20.161 3 0 Median 0.70864 0.76853 NaN 1 0 Median NaN NaN NaN 0 0 Median 568390000 330420000 237970000 355660000 209440000 146220000 21292000 11869000 9423700 158220000 90551000 67666000 14174000 8103100 6070400 19048000 10460000 8588100 0 0 0 34458 2922 36225 180929;180930;180931;180932;180933;180934;180935;180936;180937;180938;180939 183013;183014;183015;183016;183017;183018;183019;183020;183021;183022;183023;183024;183025;183026 183021 14 TVAVDWAVAK GKALKGMNMKEIKGRTVAVDWAVAKDKYKD EIKGRTVAVDWAVAKDKYKDTQSVSAIGEE R T V A K D 3 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 3 0 0 10 0 1058.576 Q9NW13;C9JAA9 Q9NW13 183 192 RBM28 RNA-binding protein 28 yes no 2 0.0035742 56.258 By matching By MS/MS By matching 1 2 1 1.1344 1.0429 45.963 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56391 0.4821 NaN 1 0 Median 1.2411 1.2694 9.4418 2 0 Median 1.1083 0.91599 NaN 1 0 Median 17419000 7510300 9908600 0 0 0 0 0 0 0 0 0 628330 413790 214540 15303000 6368700 8934000 1487900 727800 760120 34459 4145 36226 180940;180941;180942;180943 183027;183028;183029;183030 183028 4 TVAVIGGISR IEEETIKFGKPLGIRTVAVIGGISREDQGF PLGIRTVAVIGGISREDQGFRLRMGCEIVI R T V S R E 1 1 0 0 0 0 0 2 0 2 0 0 0 0 0 1 1 0 0 2 0 0 10 0 971.57638 Q9BUQ8 Q9BUQ8 499 508 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 4.9808E-05 136.39 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 3 1 3 1.2058 1.0543 19.164 13 Median 1.1376 1.0981 22.113 3 0 Median 1.2058 1.0236 33.149 3 1 Median 0.87061 0.91969 NaN 1 0 Median 1.3185 1.1266 0.24888 2 1 Median 0.96346 1.0089 NaN 1 0 Median 1.2987 1.0543 11.781 3 0 Median 85636000 41160000 44476000 11307000 5360800 5946700 9985800 4318600 5667300 37686000 20055000 17632000 15749000 6716100 9033400 4726700 2226000 2500700 6180500 2484000 3696400 34460 3842 36227 180944;180945;180946;180947;180948;180949;180950;180951;180952;180953;180954;180955;180956;180957 183031;183032;183033;183034;183035;183036;183037;183038;183039;183040;183041;183042;183043 183033 13 TVAVITSDGR ______________________________ NYINRTVAVITSDGRMIVGTLKGFDQTINL R T V G R M 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 0 10 0 1017.5455 O95777;F2Z2Y6 O95777 12 21 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes no 2 0.00034968 117.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 2 1 1.1091 1.037 6.1779 7 Median 1.1091 1.0773 NaN 1 0 Median 1.3396 1.139 NaN 1 0 Median 0.98371 0.99654 NaN 1 0 Median 1.2435 0.9786 NaN 1 0 Median 1.0142 1.0506 1.8451 2 0 Median 1.2407 0.95315 NaN 1 0 Median 46280000 21592000 24688000 13775000 6268900 7505700 11302000 4926200 6375300 10942000 5513900 5427800 2806600 1208800 1597800 6817000 3413300 3403600 638320 260270 378050 34461 1792 36228 180958;180959;180960;180961;180962;180963;180964 183044;183045;183046;183047;183048;183049;183050;183051;183052 183045 9 TVAVWDSETGER YNTDGSMLFSASTDKTVAVWDSETGERVKR TDKTVAVWDSETGERVKRLKGHTSFVNSCY K T V E R V 1 1 0 1 0 0 2 1 0 0 0 0 0 0 0 1 2 1 0 2 0 0 12 0 1348.6259 Q96DI7 Q96DI7 132 143 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 1.499E-10 174.41 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 0.98052 0.90282 12.194 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90056 0.92986 17.545 2 0 Median 1.1819 0.98901 12.896 2 1 Median 0.96717 0.97483 NaN 1 1 Median 1.0047 0.81914 2.8277 2 0 Median 100010000 51664000 48346000 0 0 0 0 0 0 60984000 32248000 28736000 14358000 6393900 7964100 19416000 10465000 8950700 5252600 2556900 2695700 34462 3627 36229 180965;180966;180967;180968;180969;180970;180971 183053;183054;183055;183056;183057;183058;183059;183060;183061;183062;183063;183064 183057 12 TVAYTEQK ILFRPSHLTNKFEDKTVAYTEQKMTSGKIK TNKFEDKTVAYTEQKMTSGKIKKFIQENIF K T V Q K M 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 2 0 1 1 0 0 8 0 938.47091 P30101 P30101 219 226 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.024929 63.48 By MS/MS 1 1.2188 1.0483 NaN 1 Median NaN NaN NaN 0 0 Median 1.2188 1.0483 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1922300 766430 1155900 0 0 0 1922300 766430 1155900 0 0 0 0 0 0 0 0 0 0 0 0 34463 2189 36230 180972 183065 183065 1 TVDDVIKEQNR ______________________________ FKKKTVDDVIKEQNRELRGTQRAIIRDRAA K T V N R E 0 1 1 2 0 1 1 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 1 1315.6732 Q9UQN3;C9J0A7 Q9UQN3 9 19 CHMP2B Charged multivesicular body protein 2b yes no 2;3 5.9813E-05 94.465 By MS/MS By MS/MS 3 4 1.1902 1.1345 16.853 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3582 1.3993 7.6738 3 2 Plateau 1.1773 1.076 13.031 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18742000 8213700 10529000 0 0 0 0 0 0 8362000 3416300 4945700 10380000 4797400 5582800 0 0 0 0 0 0 34464 667 36231 180973;180974;180975;180976;180977;180978;180979 183066;183067;183068;183069;183070;183071;183072;183073;183074;183075 183070 10 TVDFTQDSNYLLTGGQDK SGDELMTLAHKHIVKTVDFTQDSNYLLTGG FTQDSNYLLTGGQDKLLRIYDLNKPEAEPK K T V D K L 0 0 1 3 0 2 0 2 0 0 2 1 0 1 0 1 3 0 1 1 0 0 18 0 2000.9327 Q9Y3F4 Q9Y3F4 105 122 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 3.5025E-08 95.508 By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 1.2479 1.1021 22.373 6 Median 1.2974 1.1965 NaN 1 0 Median 1.0111 0.86265 2.7679 2 0 Median 1.4079 1.4 3.9565 2 2 Median 1.2003 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48703000 21126000 27577000 23868000 9979300 13889000 2103700 983060 1120600 20295000 9052100 11243000 2435600 1111400 1324200 0 0 0 0 0 0 34465 4429 36232 180980;180981;180982;180983;180984;180985 183076;183077;183078;183079;183080 183077 5 TVDISLILSEAIR TVPHEVQKLQCPKIKTVDISLILSEAIRRI IKTVDISLILSEAIRRIHNGESMAYLFRNI K T V I R R 1 1 0 1 0 0 1 0 0 3 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1428.8188 B4DP31;Q14558 B4DP31 251 263 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 yes no 2 0.00063239 68.893 By MS/MS 1 1.1802 1.0125 NaN 1 Median NaN NaN NaN 0 0 Median 1.1802 1.0125 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2136200 998470 1137700 0 0 0 2136200 998470 1137700 0 0 0 0 0 0 0 0 0 0 0 0 34466 600 36233 180986 183081;183082 183081 2 TVDISMILSEAIR TIPHEVQKLQCPKIKTVDISMILSEAIRRI IKTVDISMILSEAIRRIHNGESMSYLFRNI K T V I R R 1 1 0 1 0 0 1 0 0 3 1 0 1 0 0 2 1 0 0 1 0 0 13 0 1446.7752 O60256;I3L0S1 O60256 338 350 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 2.1898E-06 119.16 By MS/MS 1 0.58799 0.51507 NaN 1 Median NaN NaN NaN 0 0 Median 0.58799 0.51507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 667250 316420 350830 0 0 0 667250 316420 350830 0 0 0 0 0 0 0 0 0 0 0 0 34467 1607 36234 180987 183083;183084 183083 2 TVDLKPDWGK AKKGDYQKAYEDGCKTVDLKPDWGKGYSRK EDGCKTVDLKPDWGKGYSRKAAALEFLNRF K T V G K G 0 0 0 2 0 0 0 1 0 0 1 2 0 0 1 0 1 1 0 1 0 0 10 1 1157.6081 P31948;F5H783;F5GXD8 P31948 64 73 STIP1 Stress-induced-phosphoprotein 1 yes no 2 0.00024338 135.83 By MS/MS By MS/MS 1 1 0.94414 0.87693 5.7317 2 Median 0.98583 0.9132 NaN 1 0 Median 0.90422 0.8421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92004000 43544000 48460000 66808000 32465000 34344000 25196000 11079000 14116000 0 0 0 0 0 0 0 0 0 0 0 0 34468 2212 36235 180988;180989 183085;183086;183087;183088 183085 4 TVDLQDAEEAVELVQYAYFKK LIRLATAHAKARMSKTVDLQDAEEAVELVQ AEEAVELVQYAYFKKVLEKEKKRKKRSEDE K T V K K V 3 0 0 2 0 2 3 0 0 0 2 2 0 1 0 0 1 0 2 3 0 0 21 1 2458.2268 P25205;J3KQ69;A0A499FHX9;Q7Z6P5 P25205 636 656 MCM3 DNA replication licensing factor MCM3 yes no 3 0.067637 4.3512 By MS/MS 2 0.91321 0.92881 4.5415 2 Median 0.91321 0.92881 4.5415 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1178400 606280 572150 1178400 606280 572150 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34469 2129 36236 180990;180991 183089;183090 183089 2 TVDLSSHLAK ASSEAPPLINEDVKRTVDLSSHLAKVTAEV EDVKRTVDLSSHLAKVTAEVVLAHLGGGST R T V A K V 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 2 1 0 0 1 0 0 10 0 1069.5768 P04843;F8WF32 P04843 39 48 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.00036469 82.287 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2234 1.0777 6.2497 4 Median 1.1514 1.0725 NaN 1 0 Median 1.2998 1.0829 NaN 1 0 Median 1.0373 1.0616 NaN 1 0 Median 1.422 1.2138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70868000 31378000 39489000 28919000 13262000 15657000 31143000 13213000 17930000 9019000 4196100 4823000 1786400 707320 1079000 0 0 0 0 0 0 34470 1853 36237 180992;180993;180994;180995 183091;183092;183093;183094;183095;183096;183097;183098 183096 8 TVDNFVALATGEK VGRVIFGLFGKTVPKTVDNFVALATGEKGF PKTVDNFVALATGEKGFGYKNSKFHRVIKD K T V E K G 2 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 13 0 1363.6983 P23284 P23284 72 84 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 6.4222E-07 147.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 2 3 1.1744 1.1473 12.972 18 Median 1.068 0.97998 2.4377 3 0 Plateau 1.403 1.1893 3.2728 3 0 Median 1.06 1.0046 7.0312 4 0 Median 1.3879 1.15 10.132 3 0 Median 1.1492 1.2123 8.1263 2 0 Median 1.4564 1.1722 14.628 3 0 Median 1207600000 556420000 651220000 368830000 173610000 195220000 27347000 10973000 16374000 546030000 261090000 284930000 169070000 68805000 100270000 78354000 34836000 43517000 18007000 7103000 10905000 34471 2109 36238 180996;180997;180998;180999;181000;181001;181002;181003;181004;181005;181006;181007;181008;181009;181010;181011;181012;181013 183099;183100;183101;183102;183103;183104;183105;183106;183107;183108;183109;183110;183111;183112;183113;183114;183115;183116;183117;183118;183119;183120;183121;183122;183123;183124;183125;183126;183127;183128;183129;183130;183131;183132;183133;183134;183135;183136 183130 38 TVDQYFYGIK VHLLPHTHDDVGWLKTVDQYFYGIKNDIQH VGWLKTVDQYFYGIKNDIQHAGVQYILDSV K T V I K N 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 0 2 1 0 0 10 0 1232.6077 O00754;M0QZG6;M0R2P5 O00754 80 89 MAN2B1 Lysosomal alpha-mannosidase;Lysosomal alpha-mannosidase A peptide;Lysosomal alpha-mannosidase B peptide;Lysosomal alpha-mannosidase C peptide;Lysosomal alpha-mannosidase D peptide;Lysosomal alpha-mannosidase E peptide yes no 2 0.061346 26.384 By MS/MS 1 0.69485 0.65046 NaN 1 Median 0.69485 0.65046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3498900 2137500 1361400 3498900 2137500 1361400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34472 1477 36239 181014 183137 183137 1 TVDTDSHAEQGPAQQPQAQVEDADAFEHIK RSMGDHNERVHKRLRTVDTDSHAEQGPAQQ PQAQVEDADAFEHIKQGSDAYDAQTYDVAS R T V I K Q 5 0 0 4 0 5 3 1 2 1 0 1 0 1 2 1 2 0 0 2 0 0 30 0 3261.481 Q9NU22 Q9NU22 5123 5152 MDN1 Midasin yes yes 4 3.0079E-14 54.311 By MS/MS 1 0.67578 0.72144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67578 0.72144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18282000 10271000 8011000 0 0 0 0 0 0 18282000 10271000 8011000 0 0 0 0 0 0 0 0 0 34473 4112 36240 181015 183138;183139 183139 2 TVDVAAEK KPIELPVKEEEPPEKTVDVAAEKKVVKITS EEEPPEKTVDVAAEKKVVKITSEIPQTERM K T V E K K 2 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 8 0 831.4338 P82979;H0YHG0;F8VZQ9 P82979 81 88 SARNP SAP domain-containing ribonucleoprotein yes no 2 0.013601 52.716 By matching By MS/MS By matching 1 1 1 1.071 0.99974 6.9149 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0011 0.97792 NaN 1 0 Median 1.1818 0.99974 NaN 1 0 Median 1.071 1.1129 NaN 1 0 Median NaN NaN NaN 0 0 Median 2739500 1199300 1540300 0 0 0 0 0 0 580480 262010 318470 1725200 744800 980430 433830 192470 241360 0 0 0 34474 2661 36241 181016;181017;181018 183140;183141;183142 183142 3 TVEACPVVR AFQLQDGCEYVFIWRTVEACPVVRVEGDNC YVFIWRTVEACPVVRVEGDNCEVKDPRHGN R T V V R V 1 1 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 3 0 0 9 0 1029.5277 P11717 P11717 1213 1221 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.0060753 55.676 By MS/MS By matching 1 1 0.98628 0.93497 2.8584 2 Median NaN NaN NaN 0 0 Median 1.0771 0.91626 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90314 0.95406 NaN 1 0 Median NaN NaN NaN 0 0 Median 5965000 3012800 2952200 0 0 0 2947100 1298300 1648800 0 0 0 0 0 0 3017800 1714500 1303300 0 0 0 34475 1969 36242 181019;181020 183143 183143 1 TVEAEAAHGTVTR SLGMMTSVLVCPDGKTVEAEAAHGTVTRHY GKTVEAEAAHGTVTRHYRMYQKGQETSTNP K T V T R H 3 1 0 0 0 0 2 1 1 0 0 0 0 0 0 0 3 0 0 2 0 0 13 0 1340.6684 O75874 O75874 302 314 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 2;3 0.00015584 83 By MS/MS By MS/MS By matching 4 4 1 1.033 1.0439 19.068 9 Median 0.99453 0.98487 5.0958 4 0 Median 1.4836 1.2744 16.125 4 1 Median 0.96629 0.92938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10458000 4803300 5654800 3149100 1720900 1428100 6956400 2929200 4027200 352630 153180 199450 0 0 0 0 0 0 0 0 0 34476 1701 36243 181021;181022;181023;181024;181025;181026;181027;181028;181029 183144;183145;183146;183147;183148;183149;183150;183151;183152;183153;183154 183153 11 TVEALYK RQIPYTMMKFACFERTVEALYKFVVPKPRS MKFACFERTVEALYKFVVPKPRSECSKPEQ R T V Y K F 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 822.44872 Q00325;F8VVM2 Q00325 241 247 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.017757 64.803 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.4561 1.2364 26.233 7 Median 1.0116 0.99762 17.883 2 0 Median 1.6452 1.4698 32.851 3 0 Median 1.5089 1.4712 NaN 1 0 Median 1.4561 1.2364 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47755000 19837000 27918000 6246900 3207600 3039200 39073000 15640000 23433000 1165500 469970 695510 1269200 518960 750200 0 0 0 0 0 0 34477 2674 36244 181030;181031;181032;181033;181034;181035;181036 183155;183156;183157;183158;183159 183157 5 TVEAPLVTEEK LESAPSALEKTTGDKTVEAPLVTEEKTVEP TGDKTVEAPLVTEEKTVEPATVSEEAKPAS K T V E K T 1 0 0 0 0 0 3 0 0 0 1 1 0 0 1 0 2 0 0 2 0 0 11 0 1214.6394 Q96T58 Q96T58 1662 1672 SPEN Msx2-interacting protein yes yes 2 0.021919 52.79 By MS/MS 1 0.91893 0.99043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91893 0.99043 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4436000 2375400 2060600 0 0 0 0 0 0 4436000 2375400 2060600 0 0 0 0 0 0 0 0 0 34478 3741 36245 181037 183160 183160 1 TVEDADMELTSR LYTALQQYFQNGEKKTVEDADMELTSRDEG EKKTVEDADMELTSRDEGERKMEKEELDVS K T V S R D 1 1 0 2 0 0 2 0 0 0 1 0 1 0 0 1 2 0 0 1 0 0 12 0 1365.6082 F5H0F9;Q9UJX4;F5GY68 F5H0F9 169 180 ANAPC5 Anaphase-promoting complex subunit 5 yes no 2 3.3934E-06 108.67 By matching By MS/MS By MS/MS 2 2 1 0.90129 0.91515 26.354 5 Median NaN NaN NaN 0 0 Median 0.74064 0.64532 26.991 2 0 Median 1.0728 0.94002 3.7925 2 0 Median 1.1941 1.0289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11113000 5558000 5554500 0 0 0 3081400 1652800 1428600 5759600 2947200 2812400 2271500 958030 1313400 0 0 0 0 0 0 34479 1019 36246 181038;181039;181040;181041;181042 183161;183162;183163;183164 183163 4 TVEDDLLLQKPFQK SDDERCGESSKRKKRTVEDDLLLQKPFQKE RTVEDDLLLQKPFQKEKHGKVAHKQVAAEL R T V Q K E 0 0 0 2 0 2 1 0 0 0 3 2 0 1 1 0 1 0 0 1 0 0 14 1 1672.9036 Q70Z53 Q70Z53 27 40 FRA10AC1 Protein FRA10AC1 yes yes 3 0.0096925 26.124 By MS/MS By matching 1 1 1.104 1.0875 7.153 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0497 1.1439 NaN 1 0 Median 1.161 1.0339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5079400 2425300 2654100 0 0 0 0 0 0 4649400 2228300 2421100 430000 197020 232980 0 0 0 0 0 0 34480 3209 36247 181043;181044 183165 183165 1 TVEDLDGLIQQIYR EYVTNKTKKTEELRKTVEDLDGLIQQIYRD KTVEDLDGLIQQIYRDQDLTQEIAMEHFVK K T V Y R D 0 1 0 2 0 2 1 1 0 2 2 0 0 0 0 0 1 0 1 1 0 0 14 0 1661.8625 Q9ULX6 Q9ULX6 449 462 AKAP8L A-kinase anchor protein 8-like yes yes 2 1.7024E-05 128.17 By MS/MS By matching 2 1 0.86823 0.7585 6.2027 3 Median NaN NaN NaN 0 0 Median 0.85694 0.74548 2.4484 2 1 Median NaN NaN NaN 0 0 Median 1.0042 0.8265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5207100 2797600 2409400 0 0 0 5109800 2748100 2361800 0 0 0 97236 49590 47646 0 0 0 0 0 0 34481 4331 36248 181045;181046;181047 183166;183167;183168 183167 3 TVEDVFLR LHTGNLDGEDHAAERTVEDVFLRKFMWGTF EDHAAERTVEDVFLRKFMWGTFPGCLADQL R T V L R K 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 8 0 977.5182 Q96EL2 Q96EL2 86 93 MRPS24 28S ribosomal protein S24, mitochondrial yes yes 2 0.0034866 93.262 By MS/MS By MS/MS By matching 1 1 2 0.9488 0.92415 23.735 4 Median 1.0692 1.0373 NaN 1 0 Median 1.532 1.2728 NaN 1 0 Median 0.79548 0.78634 6.5067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17925000 8621500 9303600 11787000 5637100 6150000 1604100 634100 970040 4533900 2350400 2183600 0 0 0 0 0 0 0 0 0 34482 3636 36249 181048;181049;181050;181051 183169;183170;183171;183172 183170 4 TVEEVLGHFGVNESTGLSLEQVK ______________________________ FGVNESTGLSLEQVKKLKERWGSNELPAEE K T V V K K 0 0 1 0 0 1 4 3 1 0 3 1 0 1 0 2 2 0 0 4 0 0 23 0 2471.2544 P16615;J3QSY6 P16615 8 30 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 3 0.00012887 27.32 By MS/MS 4 1.238 1.079 25.874 4 Median NaN NaN NaN 0 0 Median 1.238 1.079 25.874 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9478900 3727100 5751800 0 0 0 9478900 3727100 5751800 0 0 0 0 0 0 0 0 0 0 0 0 34483 2031 36250 181052;181053;181054;181055 183173 183173 1 TVEEVLGHFGVNESTGLSLEQVKK ______________________________ GVNESTGLSLEQVKKLKERWGSNELPAEEG K T V K K L 0 0 1 0 0 1 4 3 1 0 3 2 0 1 0 2 2 0 0 4 0 0 24 1 2599.3493 P16615;J3QSY6 P16615 8 31 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 3;4 4.6529E-05 32.391 By matching By MS/MS 1 6 1.2689 1.1943 15.051 7 Median 1.5907 1.6827 NaN 1 0 Median 1.26 1.1935 9.6212 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35242000 14637000 20606000 1972300 1212400 759900 33270000 13424000 19846000 0 0 0 0 0 0 0 0 0 0 0 0 34484 2031 36251 181056;181057;181058;181059;181060;181061;181062 183174;183175;183176;183177 183177 4 TVEEVTVER AVSTPVKHADDHTPKTVEEVTVERNEKQTP DDHTPKTVEEVTVERNEKQTPSLPEPKPVY K T V E R N 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 9 0 1060.5401 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 354 362 TJP1 Tight junction protein ZO-1 yes no 2 0.0035039 81.548 By MS/MS 1 0.91915 0.96293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91915 0.96293 NaN 1 1 Median NaN NaN NaN 0 0 Median 4416700 2225100 2191600 0 0 0 0 0 0 0 0 0 0 0 0 4416700 2225100 2191600 0 0 0 34485 104 36252 181063 183178 183178 1 TVEFLQEYIVNR HKETLRFISTKLPDKTVEFLQEYIVNRNKK PDKTVEFLQEYIVNRNKKIEKRRQELMEKE K T V N R N 0 1 1 0 0 1 2 0 0 1 1 0 0 1 0 0 1 0 1 2 0 0 12 0 1509.7827 O43823 O43823 429 440 AKAP8 A-kinase anchor protein 8 yes yes 2 3.0793E-06 110.14 By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 0.77375 0.76364 133.15 6 Median 1.0796 1.0795 NaN 1 0 Median 0.82122 0.74531 NaN 1 0 Median 0.15153 0.16029 224.21 2 0 Median 1.0646 0.89815 NaN 1 0 Median 0.70015 0.7431 NaN 1 0 Median NaN NaN NaN 0 0 Median 23760000 20450000 3310700 414360 244970 169390 841690 380320 461370 19853000 18259000 1593500 335520 153110 182410 2316000 1411900 904040 0 0 0 34486 1596 36253 181064;181065;181066;181067;181068;181069 183179;183180 183179 2 TVEGAGSIAAATGFVK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV VEGAGSIAAATGFVKKDQLGKNEEGAPQEG K T V V K K 4 0 0 0 0 0 1 3 0 1 0 1 0 1 0 1 2 0 0 2 0 0 16 0 1477.7777 P37840;E7EPV7;H6UYS7 P37840 81 96 SNCA Alpha-synuclein yes no 2;3 2.4444E-20 152.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 15 15 9 16 13 0.76186 0.76842 180.42 76 Median 1.0467 0.98102 39.122 12 1 Median 0.75572 0.6571 105.9 15 4 Median 1.0969 1.1359 163.6 15 3 Median 1.5683 1.3739 275.86 6 0 Median 0.52025 0.54006 227.63 16 5 Median 0.41037 0.34704 225.87 12 3 Median 11069000000 7503000000 3566200000 3927000000 1858400000 2068500000 1666500000 939730000 726750000 1216900000 873350000 343550000 184890000 127750000 57139000 1261400000 961950000 299410000 2812600000 2741800000 70852000 34487 2271 36254 181070;181071;181072;181073;181074;181075;181076;181077;181078;181079;181080;181081;181082;181083;181084;181085;181086;181087;181088;181089;181090;181091;181092;181093;181094;181095;181096;181097;181098;181099;181100;181101;181102;181103;181104;181105;181106;181107;181108;181109;181110;181111;181112;181113;181114;181115;181116;181117;181118;181119;181120;181121;181122;181123;181124;181125;181126;181127;181128;181129;181130;181131;181132;181133;181134;181135;181136;181137;181138;181139;181140;181141;181142;181143;181144;181145;181146;181147;181148;181149 183181;183182;183183;183184;183185;183186;183187;183188;183189;183190;183191;183192;183193;183194;183195;183196;183197;183198;183199;183200;183201;183202;183203;183204;183205;183206;183207;183208;183209;183210;183211;183212;183213;183214;183215;183216;183217;183218;183219;183220;183221;183222;183223;183224;183225;183226;183227;183228;183229;183230;183231;183232;183233;183234;183235;183236;183237;183238;183239;183240;183241;183242;183243;183244;183245;183246;183247;183248;183249;183250;183251;183252;183253;183254;183255;183256;183257;183258;183259;183260;183261;183262;183263;183264;183265;183266;183267;183268;183269;183270;183271;183272;183273;183274;183275;183276;183277;183278;183279;183280;183281;183282;183283;183284;183285;183286;183287;183288;183289;183290;183291;183292;183293;183294;183295;183296;183297;183298;183299;183300;183301;183302;183303;183304;183305;183306;183307;183308;183309;183310;183311;183312 183272 132 TVEGAGSIAAATGFVKK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV EGAGSIAAATGFVKKDQLGKNEEGAPQEGI K T V K K D 4 0 0 0 0 0 1 3 0 1 0 2 0 1 0 1 2 0 0 2 0 0 17 1 1605.8726 P37840;E7EPV7;H6UYS7 P37840 81 97 SNCA Alpha-synuclein yes no 2;3 1.0258E-58 182.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 16 11 11 10 18 8 0.58746 0.55014 182.48 74 Median 1.0466 1.0091 51.551 16 1 Median 0.57651 0.5097 111.33 11 2 Median 0.37503 0.37325 177.7 11 0 Median 0.14823 0.13184 189.61 10 3 Median 0.54585 0.60129 242.08 18 8 Median 0.10221 0.088673 236.04 8 1 Median 5918000000 3898300000 2019700000 2603400000 1197700000 1405700000 328160000 268910000 59246000 385420000 333520000 51901000 181260000 75081000 106180000 2311900000 1943300000 368600000 107880000 79815000 28068000 34488 2271 36255 181150;181151;181152;181153;181154;181155;181156;181157;181158;181159;181160;181161;181162;181163;181164;181165;181166;181167;181168;181169;181170;181171;181172;181173;181174;181175;181176;181177;181178;181179;181180;181181;181182;181183;181184;181185;181186;181187;181188;181189;181190;181191;181192;181193;181194;181195;181196;181197;181198;181199;181200;181201;181202;181203;181204;181205;181206;181207;181208;181209;181210;181211;181212;181213;181214;181215;181216;181217;181218;181219;181220;181221;181222;181223 183313;183314;183315;183316;183317;183318;183319;183320;183321;183322;183323;183324;183325;183326;183327;183328;183329;183330;183331;183332;183333;183334;183335;183336;183337;183338;183339;183340;183341;183342;183343;183344;183345;183346;183347;183348;183349;183350;183351;183352;183353;183354;183355;183356;183357;183358;183359;183360;183361;183362;183363;183364;183365;183366;183367;183368;183369;183370;183371;183372;183373;183374;183375;183376;183377;183378;183379;183380;183381;183382;183383;183384;183385;183386;183387;183388;183389;183390;183391;183392;183393;183394;183395;183396;183397;183398;183399;183400;183401;183402;183403;183404;183405;183406;183407;183408;183409;183410;183411;183412;183413;183414;183415;183416;183417;183418;183419;183420;183421;183422;183423;183424;183425;183426;183427;183428;183429 183396 117 TVEGAGSIAAATGFVKKDQLGK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV IAAATGFVKKDQLGKNEEGAPQEGILEDMP K T V G K N 4 0 0 1 0 1 1 4 0 1 1 3 0 1 0 1 2 0 0 2 0 0 22 2 2147.1586 P37840;E7EPV7;H6UYS7 P37840 81 102 SNCA Alpha-synuclein yes no 3 0.019126 34.914 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2997500 2997500 0 0 0 0 0 0 0 0 0 0 0 0 0 2997500 2997500 0 0 0 0 34489 2271 36256 181224 183430 183430 1 TVEGVLIVHEHR FQRMREEFDKIGMRRTVEGVLIVHEHRLPH MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK R T V H R L 0 1 0 0 0 0 2 1 2 1 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1387.7572 O43809;H3BND3;H3BV41 O43809 79 90 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes no 2;3 1.5045E-14 182.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 4 3 3 1.1422 1.0056 16.486 17 Median 0.9085 0.86194 24.594 2 0 Median 1.3088 1.1071 NaN 1 0 Median 0.98589 0.97233 4.5933 4 0 Median 1.327 1.1117 11.967 4 0 Median 1.1422 1.15 29.89 3 0 Plateau 1.2748 0.99928 2.8204 3 0 Median 448120000 215820000 232300000 34444000 17466000 16978000 14370000 6350900 8018900 257320000 127220000 130100000 78976000 35958000 43018000 20553000 9822200 10730000 42452000 18996000 23456000 34490 1592 36257 181225;181226;181227;181228;181229;181230;181231;181232;181233;181234;181235;181236;181237;181238;181239;181240;181241;181242;181243;181244 183431;183432;183433;183434;183435;183436;183437;183438;183439;183440;183441;183442;183443;183444;183445;183446;183447;183448;183449;183450;183451;183452;183453;183454;183455;183456;183457;183458;183459;183460;183461 183453 31 TVEKPPKFTEK LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE NTYRTVEKPPKFTEKGNLEVLLFTIQSKMR R T V E K G 0 0 0 0 0 0 2 0 0 0 0 3 0 1 2 0 2 0 0 1 0 0 11 2 1302.7184 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4 Q01082 349 359 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 3 0.0026267 41.283 By matching By MS/MS By matching 1 1 1 0.73411 0.85935 22.143 3 Median 1.1039 1.2086 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68872 0.79793 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73411 0.85935 NaN 1 0 Median NaN NaN NaN 0 0 Median 3395600 1931600 1464000 460870 204250 256620 0 0 0 1508900 914410 594460 0 0 0 1425900 812910 612960 0 0 0 34491 2681;1512 36258 181245;181246;181247 183462 183462 1 TVELLSGVVDQTK TRYLNIFGESQPNPKTVELLSGVVDQTKDG PKTVELLSGVVDQTKDGLISFQEFVAFESV K T V T K D 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 2 0 0 3 0 0 13 0 1387.7559 Q9UJS0;R4GN64 Q9UJS0 57 69 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 2 2.3763E-06 139.86 By MS/MS 1 0.82007 0.77202 NaN 1 Median 0.82007 0.77202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10513000 5679100 4834300 10513000 5679100 4834300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34492 4297 36259 181248 183463;183464 183463 2 TVELPLNKEEIER LATVKKQLSRVKSKKTVELPLNKEEIERIH KKTVELPLNKEEIERIHREVAFNKTAQVLS K T V E R I 0 1 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1568.841 Q9BVJ6 Q9BVJ6 115 127 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2;3 9.2972E-08 117.2 By MS/MS 3 0.90041 0.99035 3.8325 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90041 0.99035 3.8325 3 2 Median NaN NaN NaN 0 0 Median 31165000 16170000 14995000 0 0 0 0 0 0 0 0 0 0 0 0 31165000 16170000 14995000 0 0 0 34493 3855 36260 181249;181250;181251 183465;183466;183467 183467 3 TVELSIPADPANLDSEAK RLGGIPVGVVAVETRTVELSIPADPANLDS LSIPADPANLDSEAKIIQQAGQVWFPDSAF R T V A K I 3 0 1 2 0 0 2 0 0 1 2 1 0 0 2 2 1 0 0 1 0 0 18 0 1868.9367 Q13085;Q59FY4 Q13085 1992 2009 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 4.1145E-08 95.018 By MS/MS By matching 2 1 0.53567 0.54084 15.02 3 Plateau 0.51055 0.50178 12.562 2 0 Median 0.46107 0.40682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17546000 10755000 6791100 16798000 10306000 6491700 748100 448680 299410 0 0 0 0 0 0 0 0 0 0 0 0 34494 2784 36261 181252;181253;181254 183468;183469;183470 183469 3 TVENFVALATGEK VGRIVIGLFGKVVPKTVENFVALATGEKGY PKTVENFVALATGEKGYGYKGSKFHRVIKD K T V E K G 2 0 1 0 0 0 2 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 13 0 1377.714 P45877 P45877 66 78 PPIC Peptidyl-prolyl cis-trans isomerase C yes yes 2 0.0035312 59.542 By MS/MS 1 0.92321 0.87197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92321 0.87197 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5119100 2747600 2371400 0 0 0 0 0 0 5119100 2747600 2371400 0 0 0 0 0 0 0 0 0 34495 2329 36262 181255 183471 183471 1 TVENIKDPLFR NWLHLIPQTLSHLKRTVENIKDPLFRFFER HLKRTVENIKDPLFRFFEREVKMGAKLLQD R T V F R F 0 1 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 11 1 1330.7245 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4401 4411 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 3.094E-14 186.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 5 5 4 1 4 0.91388 0.95549 31.746 23 Median 0.90406 0.9479 13.624 4 0 Linear 1.0825 1.0412 50.011 5 0 Median 0.87404 1.0482 20.981 5 0 Median 1.0122 0.95764 7.8853 4 0 Median 0.84347 0.95549 NaN 1 0 Median 0.77761 0.68914 31.311 4 0 Median 306740000 157300000 149440000 108230000 56322000 51905000 34308000 16439000 17869000 147920000 76610000 71312000 11299000 5296900 6001600 2880500 1455700 1424800 2103400 1178800 924630 34496 2865 36263 181256;181257;181258;181259;181260;181261;181262;181263;181264;181265;181266;181267;181268;181269;181270;181271;181272;181273;181274;181275;181276;181277;181278 183472;183473;183474;183475;183476;183477;183478;183479;183480;183481;183482;183483;183484 183479 13 TVENVTVFGTASASK MAAGGVGMAAVQLCRTVENVTVFGTASASK TVENVTVFGTASASKHEALKENGVTHPIDY R T V S K H 2 0 1 0 0 0 1 1 0 0 0 1 0 1 0 2 3 0 0 3 0 0 15 0 1509.7675 Q99536;K7ENX2;K7EM19;K7ER81 Q99536 211 225 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 3.0554E-09 142.97 By MS/MS By matching By MS/MS 3 1 2 1.3241 1.2159 7.5797 5 Median 1.2691 1.1702 5.4172 2 0 Median 1.3461 1.1591 NaN 1 0 Median 1.3128 1.327 0.56894 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83440000 34396000 49044000 66397000 26484000 39913000 3059000 1314200 1744800 13984000 6597800 7386200 0 0 0 0 0 0 0 0 0 34497 3750 36264 181279;181280;181281;181282;181283;181284 183485;183486;183487;183488;183489;183490;183491;183492;183493;183494 183486 10 TVEPLEYYR ______________________________ MAAGFKTVEPLEYYRRFLKENCRPDGRELG K T V Y R R 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 2 1 0 0 9 0 1168.5764 Q96B26 Q96B26 7 15 EXOSC8 Exosome complex component RRP43 yes yes 2 5.3568E-05 122.13 By MS/MS By MS/MS By MS/MS 1 1 2 1.091 0.9364 9.1522 4 Median NaN NaN NaN 0 0 Median 1.073 0.90246 NaN 1 0 Median 0.97385 0.94756 NaN 1 1 Median 1.2094 1.0116 12.601 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26845000 12976000 13870000 0 0 0 2145100 988840 1156200 17247000 8558200 8688900 7453400 3428900 4024500 0 0 0 0 0 0 34498 3604 36265 181285;181286;181287;181288 183495;183496;183497;183498;183499 183495 5 TVEPLEYYRR ______________________________ AAGFKTVEPLEYYRRFLKENCRPDGRELGE K T V R R F 0 2 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 2 1 0 0 10 1 1324.6776 Q96B26 Q96B26 7 16 EXOSC8 Exosome complex component RRP43 yes yes 3 0.00037583 64.297 By MS/MS By MS/MS 1 1 1.2277 1.2253 5.9637 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2588 1.1747 NaN 1 0 Median 1.1974 1.2781 NaN 1 1 Median NaN NaN NaN 0 0 Median 3993000 1690600 2302400 0 0 0 0 0 0 0 0 0 2362400 1057200 1305300 1630600 633440 997180 0 0 0 34499 3604 36266 181289;181290 183500;183501;183502 183501 3 TVEPPISQVGNVDTASELEK GKEKPEVTDRAGGNKTVEPPISQVGNVDTA ISQVGNVDTASELEKGVSEAAVLKPSEELP K T V E K G 1 0 1 1 0 1 3 1 0 1 1 1 0 0 2 2 2 0 0 3 0 0 20 0 2112.0586 O95104 O95104 1092 1111 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 2;3 9.988E-19 146 By MS/MS By matching By MS/MS 2 1 2 0.66784 0.70004 7.7995 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66258 0.70696 1.3917 2 0 Median 0.76907 0.69082 NaN 1 0 Median 0.69101 0.72884 14.844 2 1 Median NaN NaN NaN 0 0 Median 41185000 23014000 18171000 0 0 0 0 0 0 37149000 20740000 16409000 284350 167770 116580 3751200 2106100 1645100 0 0 0 34500 1745 36267 181291;181292;181293;181294;181295 183503;183504;183505;183506 183504 4 TVESEAASYLDQISR LIEKCNTEETVAELRTVESEAASYLDQISR TVESEAASYLDQISRYYITRAKLVSKIAKY R T V S R Y 2 1 0 1 0 1 2 0 0 1 1 0 0 0 0 3 1 0 1 1 0 0 15 0 1667.8002 K9J957;P61289;K7ESG5;A0A087WTV2;K7ENH2;B3KQ25 K9J957 144 158 PSME3 Proteasome activator complex subunit 3 yes no 2;3 6.7656E-06 86.313 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 4 1.2717 1.1259 36.092 10 Median 1.1997 1.1407 0.6172 2 0 Median 1.2704 1.07 NaN 1 0 Median 1.4265 1.3786 NaN 1 0 Median 1.3312 1.1162 NaN 1 0 Median 3.3256 3.2331 NaN 1 0 Median 1.2456 0.99114 10.541 4 0 Median 27298000 11514000 15785000 14000000 5867900 8132600 1972800 804410 1168400 624330 275160 349170 883640 354100 529530 892390 210630 681760 8924500 4001400 4923100 34501 1403 36268 181296;181297;181298;181299;181300;181301;181302;181303;181304;181305 183507;183508;183509;183510;183511;183512;183513;183514;183515;183516 183507 10 TVESGLEVAAAPSVTPQAGTALLAPFPTQR VSVGALLPDATSSHRTVESGLEVAAAPSVT PQAGTALLAPFPTQRVCSNPPCETHETGTT R T V Q R V 6 1 0 0 0 2 2 2 0 0 3 0 0 1 4 2 4 0 0 3 0 0 30 0 2978.5713 A6NEM2;P51610 A6NEM2 1386 1415 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 2.5096E-05 30.855 By MS/MS 3 0.50262 0.55193 27.377 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50262 0.55193 27.377 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9731400 7017400 2714000 0 0 0 0 0 0 9731400 7017400 2714000 0 0 0 0 0 0 0 0 0 34502 509;2438 36269 181306;181307;181308 183517;183518;183519;183520 183518 4 TVESITDIR SDTHLFPNASSKEIKTVESITDIRADIDKK SSKEIKTVESITDIRADIDKKYRCVSGTQV K T V I R A 0 1 0 1 0 0 1 0 0 2 0 0 0 0 0 1 2 0 0 1 0 0 9 0 1032.5451 P11279 P11279 138 146 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 2 0.00050786 119.27 By MS/MS By MS/MS 2 2 1.2801 1.1992 10.945 4 Median 1.2801 1.2268 1.7687 2 0 Median 1.2774 1.0774 13.704 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118170000 51196000 66971000 45227000 18716000 26510000 72940000 32480000 40460000 0 0 0 0 0 0 0 0 0 0 0 0 34503 1961 36270 181309;181310;181311;181312 183521;183522;183523;183524;183525 183522 5 TVESLEETLKK AYLQKLGFDVVFNYKTVESLEETLKKASPD FNYKTVESLEETLKKASPDGYDCYFDNVGG K T V K K A 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 2 0 0 1 0 0 11 1 1275.6922 Q14914;F2Z3J9 Q14914 195 205 PTGR1 Prostaglandin reductase 1 yes no 2;3 7.1994E-05 94.616 By MS/MS By MS/MS 2 2 0.91552 0.8579 13.468 4 Median 0.81747 0.79656 19.372 2 2 Median 0.96028 0.86502 10.047 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23204000 12241000 10962000 14323000 7428000 6895100 8880600 4813500 4067100 0 0 0 0 0 0 0 0 0 0 0 0 34504 995 36271 181313;181314;181315;181316 183526;183527;183528;183529 183528 4 TVETEAVQMLK ETETPTAEDIQLLKRTVETEAVQMLKDIKK LLKRTVETEAVQMLKDIKKEKVLLRRKSEL R T V L K D 1 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 2 0 0 2 0 0 11 0 1247.6431 E9PFR3;Q14738;H0Y8C4 E9PFR3 542 552 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.038681 28.399 By MS/MS By matching 1 1 1.1518 1.0787 9.8742 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.115 1.1567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1898 1.0059 NaN 1 0 Median 6856900 3056600 3800300 0 0 0 0 0 0 6624500 2939000 3685500 0 0 0 0 0 0 232400 117630 114780 34505 920 36272 181317;181318 183530 183530 1 TVETLLLR DSANKFEENTYCFGRTVETLLLRFGKTIME NTYCFGRTVETLLLRFGKTIMEEQLVLKRV R T V L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 1 0 0 8 0 943.57023 Q9H845;H0Y8Z9 Q9H845 511 518 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.0035575 88.942 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.1921 1.0724 13.128 5 Median 1.1144 1.0591 NaN 1 0 Median 1.3693 1.1698 21.418 2 0 Median 1.0349 1.0724 NaN 1 0 Median 1.5146 1.2763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22229000 10093000 12136000 11712000 5414600 6297300 5690700 2321000 3369700 4286600 2185200 2101400 539410 172130 367280 0 0 0 0 0 0 34506 3988 36273 181319;181320;181321;181322;181323 183531;183532;183533 183531 3 TVETRDGQVINETSQHHDDLE LPLVDTHSKRTLLIKTVETRDGQVINETSQ GQVINETSQHHDDLE_______________ K T V L E - 0 1 1 3 0 2 3 1 2 1 1 0 0 0 0 1 3 0 0 2 0 0 21 1 2422.0997 P08670 P08670 446 466 VIM Vimentin yes yes 3;4 3.8701E-15 97.488 By MS/MS By matching By MS/MS By MS/MS 3 1 5 10 0.95526 0.87266 23.781 19 Median 0.98192 0.97477 6.7859 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0686 0.92779 NaN 1 0 Median 1.0805 1.1188 4.8364 5 0 Median 0.86356 0.72479 15.923 10 2 Median 247890000 119760000 128140000 14792000 7740900 7051500 0 0 0 0 0 0 4228500 2129700 2098800 152820000 70779000 82036000 76058000 39109000 36949000 34507 1907 36274 181324;181325;181326;181327;181328;181329;181330;181331;181332;181333;181334;181335;181336;181337;181338;181339;181340;181341;181342 183534;183535;183536;183537;183538;183539;183540;183541;183542;183543;183544;183545;183546;183547;183548;183549 183541 16 TVEVAEGEAVR KNRKKLSEKPKPNGRTVEVAEGEAVRTPQS PNGRTVEVAEGEAVRTPQSVTAKQPPEIDK R T V V R T 2 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 3 0 0 11 0 1158.5881 Q86UE4;E5RJU9;H0YB56 Q86UE4 132 142 MTDH Protein LYRIC yes no 2 0.00013635 108.98 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1.091 0.92715 39.786 7 Median 0.98014 0.94354 17.565 2 1 Median 1.2467 1.0873 32.299 2 1 Median 0.45441 0.46262 NaN 1 1 Median 1.4588 1.2109 37.761 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39135000 22301000 16834000 12222000 6611500 5610800 11439000 5487100 5952400 11670000 8487000 3183100 3803300 1715700 2087600 0 0 0 0 0 0 34508 3276 36275 181343;181344;181345;181346;181347;181348;181349 183550;183551;183552;183553;183554;183555;183556;183557;183558 183556 9 TVEVLEPEVTK VKCNEQPNRVEIYEKTVEVLEPEVTKLMNF IYEKTVEVLEPEVTKLMNFMYFQRNAIERF K T V T K L 0 0 0 0 0 0 3 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 11 0 1242.6707 E7EVJ5;H7C229;Q96F07;Q7L576;A0A0G2JR96;A0A0G2JQT1;A0A0G2JRX2;A0A087WU52;A0A0G2JRV9;A0A087WWL1;A0A087WVE1;A0A087WTQ3;A0A087WWZ1 Q7L576 111 121 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2 0.00015771 112.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.839 0.80617 17.375 4 Median 0.65889 0.63747 NaN 1 0 Median 0.92158 0.79789 NaN 1 0 Median 0.76381 0.81454 NaN 1 0 Median 1.1141 0.97396 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43641000 24563000 19078000 11790000 7186900 4603400 3375700 1827400 1548300 18710000 10520000 8190100 9764900 5028700 4736200 0 0 0 0 0 0 34509 3224;897 36276 181350;181351;181352;181353 183559;183560;183561;183562;183563;183564;183565 183564 7 TVEYLHAQGVVHR FSEREASAVLFTITKTVEYLHAQGVVHRDL TKTVEYLHAQGVVHRDLKPSNILYVDESGN K T V H R D 1 1 0 0 0 1 1 1 2 0 1 0 0 0 0 0 1 0 1 3 0 0 13 0 1507.7896 B1AXG1;B7ZB17;P51812;B4DG22 B1AXG1 497 509 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2;3 0.0001169 73.624 By MS/MS By MS/MS By matching By matching 3 2 1 1 1.029 0.92136 20.709 6 Median 0.8751 0.85308 20.95 2 1 Median 1.1181 0.95721 15.46 2 0 Median NaN NaN NaN 0 0 Median 1.4754 1.2652 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89731 0.77065 NaN 1 0 Median 20294000 9508700 10785000 11897000 5715200 6181600 6842700 3087100 3755500 0 0 0 807000 318780 488220 0 0 0 747100 387510 359590 34510 581 36277 181354;181355;181356;181357;181358;181359;181360 183566;183567;183568;183569;183570;183571;183572 183571 7 TVEYLHSQGVVHR FSEREASFVLHTIGKTVEYLHSQGVVHRDL GKTVEYLHSQGVVHRDLKPSNILYVDESGN K T V H R D 0 1 0 0 0 1 1 1 2 0 1 0 0 0 0 1 1 0 1 3 0 0 13 0 1523.7845 E9PGT3;Q15418;Q5SVM6 E9PGT3 511 523 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 yes no 3 4.7085E-05 82.362 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0705 0.96638 13.724 4 Median 0.98616 0.94728 NaN 1 0 Median 1.3548 1.1736 NaN 1 0 Median 0.80074 0.84264 NaN 1 0 Median 1.1621 0.98586 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10635000 4961300 5673300 4479600 2374000 2105600 4320900 1574900 2746000 1407400 784950 622430 426750 227480 199260 0 0 0 0 0 0 34511 926 36278 181361;181362;181363;181364 183573;183574;183575;183576 183575 4 TVFAEHISDECK IVGYVETPRGLRTFKTVFAEHISDECKRRF TFKTVFAEHISDECKRRFYKNWHKSKKKAF K T V C K R 1 0 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 12 0 1434.6449 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2;F8WCR1 P39023 104 115 RPL3 60S ribosomal protein L3 yes no 2;3 1.3421E-21 196.88 By matching By MS/MS By MS/MS 2 7 2 1.0608 0.94807 37.43 11 Median 1.5627 1.5169 43.891 2 0 Median 1.0608 0.94807 32.909 7 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92188 0.87892 9.6986 2 2 Median NaN NaN NaN 0 0 Median 84493000 40135000 44358000 4461000 1672500 2788500 72262000 34452000 37810000 0 0 0 0 0 0 7769400 4010500 3758900 0 0 0 34512 2281 36279 181365;181366;181367;181368;181369;181370;181371;181372;181373;181374;181375 183577;183578;183579;183580;183581;183582;183583;183584;183585;183586 183581 10 TVFAEHISDECKR IVGYVETPRGLRTFKTVFAEHISDECKRRF FKTVFAEHISDECKRRFYKNWHKSKKKAFT K T V K R R 1 1 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 13 1 1590.746 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2;F8WCR1 P39023 104 116 RPL3 60S ribosomal protein L3 yes no 3;4 0.00035248 68.809 By MS/MS By MS/MS 1 5 1.113 1.0424 35.337 5 Median 0.60785 0.6232 NaN 1 1 Median 1.1458 1.0645 25.624 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40997000 14760000 26237000 2976700 1764300 1212300 38020000 12995000 25025000 0 0 0 0 0 0 0 0 0 0 0 0 34513 2281 36280 181376;181377;181378;181379;181380;181381 183587;183588;183589;183590;183591;183592 183588 6 TVFDEAIR VKYLECSALTQRGLKTVFDEAIRAVLCPPP LTQRGLKTVFDEAIRAVLCPPPVKKRKRKC K T V I R A 1 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 949.4869 P63000;B1AH77;B1AH80;P15153;P60763;J3KSC4;J3QLK0 P63000 167 174 RAC1;RAC2;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3 no no 2 0.0024585 135.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 2 2 1.1517 1.0207 123.73 12 Median 1.0381 0.98525 0.70353 2 0 Median 1.2417 1.0161 8.5563 2 0 Median 1.1534 1.107 NaN 1 0 Median 0.51267 0.47042 226.67 3 0 Median 1.2362 1.2833 7.5196 2 0 Median 1.2174 0.95115 14.287 2 0 Median 291510000 132160000 159350000 147050000 66157000 80897000 40481000 18099000 22382000 82124000 37621000 44503000 8795100 4721800 4073300 9509100 3905700 5603500 3549600 1657700 1891900 34514 2615;2528 36281 181382;181383;181384;181385;181386;181387;181388;181389;181390;181391;181392;181393 183593;183594;183595;183596;183597;183598;183599;183600;183601;183602;183603;183604;183605;183606;183607;183608;183609;183610 183598 18 TVFFESLER PYLHGGIAVQVKTPKTVFFESLERQLKHPK QVKTPKTVFFESLERQLKHPKCLIVDFSNP K T V E R Q 0 1 0 0 0 0 2 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 9 0 1126.5659 A0AVT1 A0AVT1 296 304 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2 0.0084827 50.04 By MS/MS By matching 1 1 1.0968 0.99927 4.4621 2 Median 1.0676 1.0313 NaN 1 0 Median 1.1268 0.96823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8474200 3979200 4495000 6658600 3185200 3473400 1815700 794040 1021600 0 0 0 0 0 0 0 0 0 0 0 0 34515 489 36282 181394;181395 183611 183611 1 TVFFWAPIMK PEKLRPLYNHPAGPRTVFFWAPIMKWGLVC PAGPRTVFFWAPIMKWGLVCAGLADMARPA R T V M K W 1 0 0 0 0 0 0 0 0 1 0 1 1 2 1 0 1 1 0 1 0 0 10 0 1238.6522 Q5R3B4;O95563 Q5R3B4 40 49 MPC2 Mitochondrial pyruvate carrier 2 yes no 2 0.031122 33.797 By MS/MS By matching 2 2 1.2844 1.1727 15.904 4 Median 1.2065 1.1727 3.6974 2 0 Median 1.5121 1.3113 24.907 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6003500 2624500 3379000 4617800 2034800 2582900 1385700 589660 796060 0 0 0 0 0 0 0 0 0 0 0 0 34516 1779 36283 181396;181397;181398;181399 183612;183613 183612 2 TVFGVEPDLTR DFSHPHYLAGRRAMKTVFGVEPDLTREGGS RAMKTVFGVEPDLTREGGSIPVTLTFQEAT K T V T R E 0 1 0 1 0 0 1 1 0 0 1 0 0 1 1 0 2 0 0 2 0 0 11 0 1232.6401 Q96KP4 Q96KP4 403 413 CNDP2 Cytosolic non-specific dipeptidase yes yes 2 0.00015157 89.247 By MS/MS By matching By MS/MS 1 1 1 0.96039 0.90523 3.2223 3 Median 0.96039 0.90846 NaN 1 0 Median 1.0544 0.90523 NaN 1 0 Median 0.8545 0.85769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27113000 13955000 13158000 20666000 10627000 10038000 2537500 1200000 1337500 3910000 2127200 1782800 0 0 0 0 0 0 0 0 0 34517 3696 36284 181400;181401;181402 183614;183615;183616 183615 3 TVFGYLKPDNR RRIVQACVDCALETKTVFGYLKPDNRGGEV LETKTVFGYLKPDNRGGEVITASFDGETHS K T V N R G 0 1 1 1 0 0 0 1 0 0 1 1 0 1 1 0 1 0 1 1 0 0 11 1 1308.6826 Q9UQR0;B4DRC2 Q9UQR0 408 418 SCML2 Sex comb on midleg-like protein 2 yes no 3 0.0017974 61.435 By MS/MS 1 0.56409 0.60011 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56409 0.60011 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25200000 15472000 9727400 0 0 0 0 0 0 25200000 15472000 9727400 0 0 0 0 0 0 0 0 0 34518 4363 36285 181403 183617 183617 1 TVFKTENSILR NPGNLGGTMRLGIRRTVFKTENSILRKLYG GIRRTVFKTENSILRKLYGDVPFIEERHRH R T V L R K 0 1 1 0 0 0 1 0 0 1 1 1 0 1 0 1 2 0 0 1 0 0 11 1 1306.7245 Q9NRF8 Q9NRF8 455 465 CTPS2 CTP synthase 2 yes yes 3 0.01988 25.437 By matching By MS/MS By matching 1 2 2 1.2746 1.1244 24.137 5 Median NaN NaN NaN 0 0 Median 1.2746 1.1244 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80568 0.91129 13.136 2 0 Median 1.6049 1.3542 24.24 2 0 Median 45969000 20362000 25607000 0 0 0 1067900 459340 608570 0 0 0 0 0 0 21633000 10696000 10937000 23268000 9206400 14061000 34519 4080 36286 181404;181405;181406;181407;181408 183618 183618 1 TVFQFDVQR KKHGGSDNASTDCERTVFQFDVQRKYFKEA STDCERTVFQFDVQRKYFKEALDRWAQFFI R T V Q R K 0 1 0 1 0 2 0 0 0 0 0 0 0 2 0 0 1 0 0 2 0 0 9 0 1138.5771 O43847;G3V1R5;F5H7V1 O43847 272 280 NRD1 Nardilysin yes no 2 0.00045508 96.253 By MS/MS By MS/MS 1 1 1.3684 1.2351 16.752 2 Median 1.441 1.3904 NaN 1 1 Median 1.2994 1.0971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12937000 5552700 7384600 7998000 3452200 4545800 4939300 2100500 2838800 0 0 0 0 0 0 0 0 0 0 0 0 34520 1597 36287 181409;181410 183619;183620 183619 2 TVFRPPLDIYDVLIR LEKQLMDPRGPGDIRTVFRPPLDIYDVLIR TVFRPPLDIYDVLIRLSPRHIPRHRQAVDS R T V I R L 0 2 0 2 0 0 0 0 0 2 2 0 0 1 2 0 1 0 1 2 0 0 15 1 1816.0247 Q9H6R4;A0A0C4DFX0 Q9H6R4 999 1013 NOL6 Nucleolar protein 6 yes no 2;3 0.0028298 48.004 By matching By matching By MS/MS By matching 2 1 4 2 0.85785 0.91886 41.619 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49453 0.55765 78.059 2 0 Median 1.5343 1.5021 NaN 1 0 Median 0.84295 0.90937 3.2613 4 0 Median 0.91552 0.80087 27.222 2 0 Median 9465100 5177100 4288000 0 0 0 0 0 0 1521400 1063900 457510 115640 53840 61798 7385800 3821000 3564800 442310 238380 203920 34521 3976 36288 181411;181412;181413;181414;181415;181416;181417;181418;181419 183621;183622;183623;183624 183623 4 TVFSADPNVVDLHK ILSVELPKIYQEGWRTVFSADPNVVDLHKM RTVFSADPNVVDLHKMGPHFYGFGSQLLHF R T V H K M 1 0 1 2 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 3 0 0 14 0 1540.7886 Q9BRX5 Q9BRX5 98 111 GINS3 DNA replication complex GINS protein PSF3 yes yes 3 0.00023029 58.21 By MS/MS By MS/MS 2 1 0.90148 0.88729 10.592 3 Median 0.87356 0.86114 4.2307 2 0 Median 1.2186 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29366000 15764000 13603000 25685000 13998000 11687000 3681000 1765400 1915600 0 0 0 0 0 0 0 0 0 0 0 0 34522 3806 36289 181420;181421;181422 183625;183626;183627;183628 183625 4 TVGALQVLGTEAQSSLLK LLAALECYNTFIGERTVGALQVLGTEAQSS ALQVLGTEAQSSLLKAVAFFLESIAMHDII R T V L K A 2 0 0 0 0 2 1 2 0 0 4 1 0 0 0 2 2 0 0 2 0 0 18 0 1814.0149 P78527 P78527 1275 1292 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.9493E-52 222.94 By MS/MS By matching By MS/MS By MS/MS By MS/MS 5 3 5 3 3 1.0076 1.0485 15.728 19 Median 0.99052 0.95503 6.4439 5 0 Median 1.4209 1.2596 17.679 3 0 Median 0.96505 1.0247 5.5172 5 0 Median 1.4283 1.4039 3.4034 3 0 Plateau 1.0468 1.0761 7.7362 3 1 Median NaN NaN NaN 0 0 Median 323030000 158750000 164280000 147270000 71714000 75556000 8938800 3639400 5299400 139190000 70560000 68627000 8803000 3567600 5235300 18829000 9271200 9558300 0 0 0 34523 2647 36290 181423;181424;181425;181426;181427;181428;181429;181430;181431;181432;181433;181434;181435;181436;181437;181438;181439;181440;181441 183629;183630;183631;183632;183633;183634;183635;183636;183637;183638;183639;183640;183641;183642;183643;183644;183645;183646;183647;183648;183649;183650;183651;183652 183637 24 TVGATALPR LVRLNSKWDLRRLCKTVGATALPRLTPPVL LRRLCKTVGATALPRLTPPVLEEMGHCDSV K T V P R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 2 0 0 1 0 0 9 0 884.50797 P50990;H7C4C8 P50990 327 335 CCT8 T-complex protein 1 subunit theta yes no 2 0.0019606 75.738 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 0.97633 0.87627 25.698 7 Median 0.82084 0.79418 30.572 2 1 Median 1.3162 1.1397 37.178 2 0 Median 0.90706 0.95597 NaN 1 0 Median 0.92589 0.79948 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97633 0.83712 NaN 1 0 Median 43593000 22072000 21520000 21219000 11224000 9995700 18610000 9016800 9593000 1651600 832300 819260 1191200 548090 643100 0 0 0 920520 451140 469380 34524 2423 36291 181442;181443;181444;181445;181446;181447;181448 183653;183654;183655;183656;183657;183658;183659;183660;183661 183659 9 TVGFGTNNSEHITYLEHNPYEK LLHHPYEPSGNKKGKTVGFGTNNSEHITYL NSEHITYLEHNPYEKFSKEELKKAQDVLVQ K T V E K F 0 0 3 0 0 0 3 2 2 1 1 1 0 1 1 1 3 0 2 1 0 0 22 0 2549.1823 Q99459 Q99459 602 623 CDC5L Cell division cycle 5-like protein yes yes 3;4 1.6685E-12 72.015 By matching By MS/MS By matching By MS/MS 1 4 1 2 0.85715 0.88466 19.514 8 Median 1.1597 1.1329 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79619 0.85582 16.536 4 0 Median 0.79872 0.68538 NaN 1 0 Median 0.95621 0.98139 0.056704 2 0 Median NaN NaN NaN 0 0 Median 103920000 55803000 48113000 4707600 2173600 2534000 0 0 0 83050000 46045000 37005000 405280 287480 117800 15753000 7296900 8455600 0 0 0 34525 3745 36292 181449;181450;181451;181452;181453;181454;181455;181456 183662;183663;183664;183665;183666;183667;183668 183663 7 TVGGKEDVIWELLNHAQEHFGK ECYLAMVPSHAVVARTVGGKEDVIWELLNH VIWELLNHAQEHFGKDKPDNFQLFQSPHGK R T V G K D 1 0 1 1 0 1 3 3 2 1 2 2 0 1 0 0 1 1 0 2 0 0 22 1 2506.2605 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 278 299 yes no 3;4 6.1029E-08 60.602 By MS/MS 2 0.029496 0.028568 180.03 2 Median NaN NaN NaN 0 0 Median 0.029496 0.028568 180.03 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29994000 29616000 377810 0 0 0 29994000 29616000 377810 0 0 0 0 0 0 0 0 0 0 0 0 + 34526 769 36293 181457;181458 183669;183670;183671 183671 3 TVGIDDLTGEPLIQR PASGRVYNIEFNPPKTVGIDDLTGEPLIQR TVGIDDLTGEPLIQREDDKPETVIKRLKAY K T V Q R E 0 1 0 2 0 1 1 2 0 2 2 0 0 0 1 0 2 0 0 1 0 0 15 0 1625.8625 Q9UIJ7 Q9UIJ7 147 161 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 7.2395E-08 101.95 By MS/MS 1 0.6876 0.65245 NaN 1 Median 0.6876 0.65245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13923000 7863800 6059700 13923000 7863800 6059700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34527 4291 36294 181459 183672 183672 1 TVGMLSNMIAFYDMAR QNGYTPYDRFCPFYKTVGMLSNMIAFYDMA VGMLSNMIAFYDMARRAVETTAQSDNKITW K T V A R R 2 1 1 1 0 0 0 1 0 1 1 0 3 1 0 1 1 0 1 1 0 0 16 0 1818.8467 P38606 P38606 537 552 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 8.7485E-10 102.66 By MS/MS By MS/MS By matching 1 1 1 1.1744 1.122 50.554 3 Median 1.1744 1.122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2058 1.2428 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49141 0.49417 NaN 1 0 Median NaN NaN NaN 0 0 Median 10085000 4571800 5513400 9181900 4133200 5048700 0 0 0 660360 266270 394080 0 0 0 242940 172330 70611 0 0 0 34528 2276 36295 181460;181461;181462 183673;183674;183675 183674 3 TVGQCLETTAQR LSYVQGCTKKHLNSKTVGQCLETTAQRVPE NSKTVGQCLETTAQRVPEREALVVLHEDVR K T V Q R V 1 1 0 0 1 2 1 1 0 0 1 0 0 0 0 0 3 0 0 1 0 0 12 0 1362.6562 Q96CM8;E9PF16;D6RF87 Q96CM8 73 84 ACSF2 Acyl-CoA synthetase family member 2, mitochondrial yes no 2 0.056027 42.743 By MS/MS 1 2.0644 1.7836 NaN 1 Median NaN NaN NaN 0 0 Median 2.0644 1.7836 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1168800 367910 800880 0 0 0 1168800 367910 800880 0 0 0 0 0 0 0 0 0 0 0 0 34529 916 36296 181463 183676 183676 1 TVGQLYK TALPGAFKTRKGMFRTVGQLYKEQLAKLMA KTRKGMFRTVGQLYKEQLAKLMATLRNTNP R T V Y K E 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 807.44905 P35579;Q7Z406;P35580 P35579 645 651 MYH9;MYH14;MYH10 Myosin-9;Myosin-14;Myosin-10 no no 2 0.021746 74.717 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1.1711 1.104 12.973 7 Median 1.2087 1.1628 NaN 1 0 Median 1.0914 0.95381 11.782 2 0 Median 1.0105 1.1264 NaN 1 0 Median 1.4802 1.3373 NaN 1 0 Median 0.97553 1.0209 NaN 1 0 Median 1.2889 1.104 NaN 1 1 Median 54734000 24678000 30055000 4176400 1851200 2325200 33012000 14988000 18024000 2907100 1398400 1508800 485260 195430 289830 8548300 3741100 4807200 5604100 2503700 3100400 34530 2244;2245;3242 36297 181464;181465;181466;181467;181468;181469;181470 183677;183678;183679;183680;183681;183682;183683;183684;183685 183685 9 TVGQLYKEQLAK TALPGAFKTRKGMFRTVGQLYKEQLAKLMA MFRTVGQLYKEQLAKLMATLRNTNPNFVRC R T V A K L 1 0 0 0 0 2 1 1 0 0 2 2 0 0 0 0 1 0 1 1 0 0 12 1 1376.7664 P35579 P35579 645 656 MYH9 Myosin-9 yes yes 2;3 2.5411E-05 152.7 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 1 1 0.99579 1.1154 39.455 7 Median 1.2303 1.1503 4.3594 2 0 Median 0.85988 0.83838 NaN 1 0 Median 0.97232 1.1202 3.1143 2 1 Median NaN NaN NaN 0 0 Median 1.135 1.2308 NaN 1 1 Median 0.45543 0.40641 NaN 1 1 Median 113510000 52500000 61014000 81135000 35981000 45154000 1030200 494630 535530 7716600 3791100 3925500 0 0 0 19224000 9326100 9897700 4408600 2906900 1501700 34531 2244 36298 181471;181472;181473;181474;181475;181476;181477 183686;183687;183688;183689;183690 183689 5 TVGTPIASVPGSTNTGTVPGSEK SASQQFLSSVIQNLRTVGTPIASVPGSTNT VPGSTNTGTVPGSEKDSDSMETEEKTSSAF R T V E K D 1 0 1 0 0 0 1 4 0 1 0 1 0 0 3 3 5 0 0 3 0 0 23 0 2156.0961 A0A087WW66;Q99460;H7BZR6 A0A087WW66 270 292 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 8.3086E-19 86.641 By MS/MS 2 0.65473 0.63487 1.7516 2 Median 0.65473 0.63487 1.7516 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16832000 9881500 6950300 16832000 9881500 6950300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34532 54 36299 181478;181479 183691;183692 183691 2 TVGTPIASVPGSTNTGTVPGSEKDSDSMETEEK SASQQFLSSVIQNLRTVGTPIASVPGSTNT PGSEKDSDSMETEEKTSSAFVGKTPEASPE R T V E K T 1 0 1 2 0 0 4 4 0 1 0 2 1 0 3 5 6 0 0 3 0 0 33 1 3307.5249 A0A087WW66;Q99460;H7BZR6 A0A087WW66 270 302 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 3 1.5843E-08 49.57 By MS/MS 1 0.61489 0.64091 NaN 1 Median 0.61489 0.64091 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26766000 20172000 6593900 26766000 20172000 6593900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34533 54 36300 181480 183693 183693 1 TVGVEPAADGK KARNSFRYNGLIHRKTVGVEPAADGKGVVV IHRKTVGVEPAADGKGVVVVIKRRSGRKSG K T V G K G 2 0 0 1 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 11 0 1042.5295 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 48 58 RPL28 60S ribosomal protein L28 yes no 2 0.00019545 105.52 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.94595 0.88804 18.885 5 Median 0.94595 0.89427 NaN 1 0 Median 1.0483 0.89861 NaN 1 0 Median 0.76791 0.7286 NaN 1 1 Median 0.70907 0.58477 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0967 0.88804 NaN 1 0 Median 16367000 8399800 7967400 4556800 2355600 2201200 7093200 3468300 3624900 4001800 2177700 1824100 618850 352680 266170 0 0 0 96620 45646 50974 34534 1191 36301 181481;181482;181483;181484;181485 183694;183695;183696;183697;183698 183696 5 TVGVEPAADGKGVVVVIK KARNSFRYNGLIHRKTVGVEPAADGKGVVV VEPAADGKGVVVVIKRRSGRKSGNCHRGGH K T V I K R 2 0 0 1 0 0 1 3 0 1 0 2 0 0 1 0 1 0 0 6 0 0 18 1 1737.0036 H0YMF4;H0YKD8;P46779 H0YMF4 48 65 RPL28 60S ribosomal protein L28 yes no 3 0.00038263 36.593 By MS/MS By matching By matching 2 1 1 1.0364 0.98138 15.647 4 Median 0.93986 0.94145 1.0326 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1309 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5521 1.3091 NaN 1 0 Median 17888000 8604600 9283800 14161000 7188600 6972000 0 0 0 0 0 0 183360 64466 118890 0 0 0 3544300 1351500 2192800 34535 1191 36302 181486;181487;181488;181489 183699;183700;183701;183702 183701 4 TVHAGEVGSAEVVK HVQAYQEAVKSGIHRTVHAGEVGSAEVVKE RTVHAGEVGSAEVVKEAVDILKTERLGHGY R T V V K E 2 0 0 0 0 0 2 2 1 0 0 1 0 0 0 1 1 0 0 4 0 0 14 0 1381.7201 F5GXW0;P00813 F5GXW0 212 225 ADA Adenosine deaminase yes no 3 0.00024287 56.482 By MS/MS By MS/MS 1 1 1.1865 1.0656 13.844 2 Median 1.0299 0.96619 NaN 1 0 Median 1.3669 1.1751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6540000 3129200 3410800 3096500 1700500 1396000 3443500 1428700 2014800 0 0 0 0 0 0 0 0 0 0 0 0 34536 1008 36303 181490;181491 183703;183704 183703 2 TVHNLYLFDR ______________________________ ______________________________ M T V D R N 0 1 1 1 0 0 0 0 1 0 2 0 0 1 0 0 1 0 1 1 0 0 10 0 1276.6564 I3L3S0;Q9Y5R8;I3L1R8;I3L3V5 I3L3S0 2 11 TRAPPC1 Trafficking protein particle complex subunit 1 yes no 2;3 0.0023766 75.378 By MS/MS By matching By MS/MS 2 1 1 1.0769 1.0463 21.434 4 Median 1.247 1.2243 28 2 1 Median 1.0764 0.90878 NaN 1 0 Median 1.0775 1.09 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17155000 7104500 10051000 13490000 5370400 8119900 1077900 458870 619030 2587000 1275300 1311800 0 0 0 0 0 0 0 0 0 34537 1290 36304 181492;181493;181494;181495 183705;183706 183705 2 TVHTEWTQR CLGPEVTTQYGGQYRTVHTEWTQRDLERME YGGQYRTVHTEWTQRDLERMENIRFCRQYL R T V Q R D 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 3 1 0 1 0 0 9 0 1156.5625 C9JIF9;P13798;H7C393 C9JIF9 45 53 APEH Acylamino-acid-releasing enzyme yes no 2 0.0036618 63.565 By MS/MS 1 2.2969 1.9888 NaN 1 Median NaN NaN NaN 0 0 Median 2.2969 1.9888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4760300 1423700 3336600 0 0 0 4760300 1423700 3336600 0 0 0 0 0 0 0 0 0 0 0 0 34538 699 36305 181496 183707 183707 1 TVHVVQPVQAVPEGEAAR TVQPTQSPYPTQLFRTVHVVQPVQAVPEGE VVQPVQAVPEGEAARTSTMQDETLNSSVQS R T V A R T 3 1 0 0 0 2 2 1 1 0 0 0 0 0 2 0 1 0 0 5 0 0 18 0 1886.001 A0A0U1RRL5;P32519 A0A0U1RRL5 385 402 ELF1 ETS-related transcription factor Elf-1 yes no 3 0.00051425 63.691 By MS/MS By MS/MS 2 2 0.78886 0.76462 16.844 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78886 0.8258 12.668 2 0 Median 0.80207 0.68183 17.989 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14592000 9159400 5432300 0 0 0 0 0 0 11809000 7564300 4244500 2782900 1595100 1187800 0 0 0 0 0 0 34539 310 36306 181497;181498;181499;181500 183708;183709 183708 1 TVHYLPILFIDQLSNR PADVHRYMKMIQLGKTVHYLPILFIDQLSN VHYLPILFIDQLSNRVKDLMVINRSTTELP K T V N R V 0 1 1 1 0 1 0 0 1 2 3 0 0 1 1 1 1 0 1 1 0 0 16 0 1928.052 Q96KA5;G5E9Z2 Q96KA5 206 221 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes no 2;3 3.5776E-05 52.254 By MS/MS By MS/MS 5 2 1.0656 0.95245 8.2672 7 Median 1.0153 1.0193 9.7183 5 0 Median 1.1401 0.94536 1.0576 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22978000 11099000 11880000 10552000 5137600 5414600 12426000 5961300 6465000 0 0 0 0 0 0 0 0 0 0 0 0 34540 3691 36307 181501;181502;181503;181504;181505;181506;181507 183710;183711;183712;183713;183714 183713 5 TVIDYNGER HSFPTLKFFPASADRTVIDYNGERTLDGFK PASADRTVIDYNGERTLDGFKKFLESGGQD R T V E R T 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 9 0 1065.5091 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 453 461 P4HB Protein disulfide-isomerase yes no 2 8.3479E-07 130.27 By MS/MS By MS/MS By MS/MS 3 3 1 1.4804 1.2575 12.314 4 Median 1.224 1.1646 NaN 1 1 Median 1.6593 1.4139 12.394 2 1 Median NaN NaN NaN 0 0 Median 1.4199 1.221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52592000 20620000 31973000 14289000 6230300 8059100 36234000 13662000 22572000 0 0 0 2069300 727500 1341800 0 0 0 0 0 0 34541 1883 36308 181508;181509;181510;181511;181512;181513;181514 183715;183716;183717;183718;183719;183720;183721;183722 183716 8 TVIEMFK YSLVPKKKTKVLKQRTVIEMFKSITHSTVG KTKVLKQRTVIEMFKSITHSTVGSKGEKDL R T V F K S 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 1 0 0 7 0 866.45718 Q9H9B1;A0A1B0GV09;A0A1B0GU48;A0A1B0GUD1;A0A1B0GVZ8;A0A0D9SEQ1;A0A0D9SER9;A0A1W2PPZ7;A0A1B0GW12 Q9H9B1 311 317 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.040795 44.692 By MS/MS 1 0.82057 0.86618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82057 0.86618 NaN 1 0 Median NaN NaN NaN 0 0 Median 2618200 1199000 1419200 0 0 0 0 0 0 0 0 0 0 0 0 2618200 1199000 1419200 0 0 0 34542 3997 36309 181515 183723 183723 1 TVIEPMACDGLR EAVPFKNKDRDDMVRTVIEPMACDGLRTIC MVRTVIEPMACDGLRTICIAYRDFDDTEPS R T V L R T 1 1 0 1 1 0 1 1 0 1 1 0 1 0 1 0 1 0 0 1 0 0 12 0 1360.6479 P23634 P23634 625 636 ATP2B4 Plasma membrane calcium-transporting ATPase 4 yes yes 2 0.0015234 51.927 By MS/MS 1 1.3194 1.1144 NaN 1 Median NaN NaN NaN 0 0 Median 1.3194 1.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2143200 1082600 1060600 0 0 0 2143200 1082600 1060600 0 0 0 0 0 0 0 0 0 0 0 0 34543 2119 36310 181516 183724 183724 1 TVIEPMASEGLR EAKVFRPRDRDDIVKTVIEPMASEGLRTIC IVKTVIEPMASEGLRTICLAFRDFPAGEPE K T V L R T 1 1 0 0 0 0 2 1 0 1 1 0 1 0 1 1 1 0 0 1 0 0 12 0 1301.6649 P20020;E7ERY9 P20020 635 646 ATP2B1 Plasma membrane calcium-transporting ATPase 1;Calcium-transporting ATPase yes no 2 0.0011208 85.377 By MS/MS By MS/MS By matching 3 3 1 1.1885 1.0669 87.298 6 Median 1.0721 1.0262 14.349 2 1 Median 1.1693 1.0021 104.02 3 1 Median NaN NaN NaN 0 0 Median 3.0954 2.6785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32175000 16454000 15721000 25447000 13097000 12350000 5901800 3126400 2775400 0 0 0 826240 230990 595240 0 0 0 0 0 0 34544 2071 36311 181517;181518;181519;181520;181521;181522;181523 183725;183726;183727;183728 183725 4 TVIESSPESPVTITEPYR ASGSNNAVIYVHNLKTVIESSPESPVTITE ESSPESPVTITEPYRTLSGHTAKITSVAWS K T V Y R T 0 1 0 0 0 0 3 0 0 2 0 0 0 0 3 3 3 0 1 2 0 0 18 0 2004.0052 Q8TEQ6 Q8TEQ6 616 633 GEMIN5 Gem-associated protein 5 yes yes 2 1.2907E-12 142.57 By MS/MS By matching 1 1 0.72053 0.64512 5.9379 2 Median 0.71679 0.67278 NaN 1 0 Median 0.72429 0.61859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13780000 7833300 5946600 12960000 7361700 5598600 819600 471560 348030 0 0 0 0 0 0 0 0 0 0 0 0 34545 3478 36312 181524;181525 183729;183730 183730 2 TVIFVATGEGK PQRVTLTLPVLNAARTVIFVATGEGKAAVL NAARTVIFVATGEGKAAVLKRILEDQEENP R T V G K A 1 0 0 0 0 0 1 2 0 1 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1120.6128 O95336;M0R261 O95336 198 208 PGLS 6-phosphogluconolactonase yes no 2 1.1952E-05 156.92 By MS/MS By MS/MS 1 1 1.2332 1.0795 4.1143 2 Median 1.1369 1.0486 NaN 1 0 Median 1.3377 1.1114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 112080000 53320000 58765000 77082000 38306000 38776000 35002000 15014000 19988000 0 0 0 0 0 0 0 0 0 0 0 0 34546 1764 36313 181526;181527 183731;183732;183733;183734 183732 4 TVIGSVLLR LKEGSTAQLIINTEKTVIGSVLLRELKPVL IINTEKTVIGSVLLRELKPVLSQG______ K T V L R E 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 2 0 0 9 0 956.60187 O00203 O00203 1077 1085 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.00077011 98.997 By MS/MS By matching By matching By matching By matching 4 3 1 1 1 1.1332 1.0812 33.998 10 Median 1.0938 1.0832 13.585 4 0 Median 1.1231 0.96126 10.322 3 0 Median 2.6267 2.8666 NaN 1 0 Median 1.1429 1.0046 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6043 1.1987 NaN 1 0 Median 17136000 7171500 9964600 8859500 4150000 4709500 2447200 1141000 1306200 1947300 401230 1546100 231410 101830 129580 0 0 0 3650600 1377400 2273200 34547 1447 36314 181528;181529;181530;181531;181532;181533;181534;181535;181536;181537 183735;183736;183737 183736 3 TVIIEQSWGSPK LLADAVAVTMGPKGRTVIIEQSWGSPKVTK KGRTVIIEQSWGSPKVTKDGVTVAKSIDLK R T V P K V 0 0 0 0 0 1 1 1 0 2 0 1 0 0 1 2 1 1 0 1 0 0 12 0 1343.7085 P10809;E7ESH4;E7EXB4;C9JL25;C9JCQ4;C9JL19 P10809 61 72 HSPD1 60 kDa heat shock protein, mitochondrial yes no 2 3.0207E-13 179.8 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 1 2 1.2353 1.0469 22.077 11 Median 0.87298 0.82119 7.5627 4 2 Median 1.2542 1.0583 3.1815 4 0 Median 1.0118 0.97137 NaN 1 0 Median 1.7318 1.4777 7.791 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 745710000 362460000 383250000 504360000 250110000 254250000 124220000 53848000 70371000 106180000 54421000 51756000 10956000 4079300 6877100 0 0 0 0 0 0 34548 1947 36315 181538;181539;181540;181541;181542;181543;181544;181545;181546;181547;181548;181549 183738;183739;183740;183741;183742;183743;183744;183745;183746;183747;183748;183749;183750;183751;183752;183753;183754;183755;183756;183757;183758;183759;183760;183761 183745 24 TVIIHDRPDITHPR ESDRREVRGERDERRTVIIHDRPDITHPRH RTVIIHDRPDITHPRHPREAGPNPSRPTSW R T V P R H 0 2 0 2 0 0 0 0 2 3 0 0 0 0 2 0 2 0 0 1 0 0 14 1 1668.906 Q9NWH9;H7C3F4 Q9NWH9 855 868 SLTM SAFB-like transcription modulator yes no 3;4 3.3392E-07 97.551 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 3 0.75502 0.85006 85.142 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69559 0.84599 5.755 2 0 Median 0.89768 0.87882 2.0624 2 0 Median 0.64357 0.6962 123.42 5 2 Median 1.2634 1.1421 15.167 3 1 Plateau 81848000 50844000 31004000 0 0 0 0 0 0 18771000 10594000 8176700 8890700 4488500 4402200 49838000 34006000 15833000 4348500 1756000 2592500 34549 4149 36316 181550;181551;181552;181553;181554;181555;181556;181557;181558;181559;181560;181561;181562 183762;183763;183764;183765;183766;183767;183768;183769;183770;183771;183772;183773;183774;183775;183776;183777 183763 15 TVIKEGEEQLQTQHQK RNLTYSAPLYVDITKTVIKEGEEQLQTQHQ VIKEGEEQLQTQHQKTFIGKIPIMLRSTYC K T V Q K T 0 0 0 0 0 4 3 1 1 1 1 2 0 0 0 0 2 0 0 1 0 0 16 1 1894.9749 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 124 139 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3;4 0.00016228 45.434 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 2 3 2 1.0262 1.0823 21.131 10 Median 1.2118 1.2801 9.4661 2 0 Median 1.3669 1.2754 NaN 1 0 Median 0.96888 1.113 11.774 2 0 Median NaN NaN NaN 0 0 Median 0.98645 1.0425 26.627 3 0 Median 0.98203 0.88831 11.659 2 0 Median 33723000 17145000 16578000 5293500 2420100 2873400 3265200 1506700 1758500 11583000 5827600 5755300 0 0 0 11383000 6174900 5208500 2197900 1215900 982020 34550 671 36317 181563;181564;181565;181566;181567;181568;181569;181570;181571;181572 183778;183779;183780;183781;183782;183783;183784;183785;183786 183786 9 TVIKKDEQEHEFYK NRYIVLAKDFEKAYKTVIKKDEQEHEFYK_ KTVIKKDEQEHEFYK_______________ K T V Y K - 0 0 0 1 0 1 3 0 1 1 0 3 0 1 0 0 1 0 1 1 0 0 14 2 1792.8996 P43686 P43686 405 418 PSMC4 26S protease regulatory subunit 6B yes yes 4 0.014376 24.53 By MS/MS By matching 1 1 1.2694 1.2274 21.515 2 Median 1.0838 1.0542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4868 1.4291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12269000 6397700 5871300 11024000 5737300 5287100 0 0 0 0 0 0 1244600 660390 584180 0 0 0 0 0 0 34551 2327 36318 181573;181574 183787 183787 1 TVINFTMPNTIK ATDVAARGLDIEGVKTVINFTMPNTIKHYV GVKTVINFTMPNTIKHYVHRVGRTARAGRA K T V I K H 0 0 2 0 0 0 0 0 0 2 0 1 1 1 1 0 3 0 0 1 0 0 12 0 1377.7326 B7Z6D5;Q96GQ7 B7Z6D5 503 514 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0041475 44.309 By matching By MS/MS By matching 1 2 1 1.0634 0.9928 19.98 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2024 1.2958 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86925 0.90186 17.379 2 0 Median 1.168 0.96653 NaN 1 0 Median 17555000 9115800 8439500 0 0 0 0 0 0 1996100 1007600 988470 0 0 0 14219000 7503300 6715700 1340200 604800 735350 34552 635 36319 181575;181576;181577;181578 183788;183789;183790 183788 3 TVINYDVAR ATDVAARGLDIPSIKTVINYDVARDIDTHT DIPSIKTVINYDVARDIDTHTHRIGRTGRA K T V A R D 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 9 0 1049.5506 Q86XP3;A0A0A0MSJ0 Q86XP3 569 577 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.00082812 93.195 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1.0658 0.96485 24.954 7 Median NaN NaN NaN 0 0 Median 1.553 1.3411 33.663 2 1 Median 0.89146 0.96216 3.8683 2 1 Median 1.1368 0.96485 NaN 1 0 Median 0.75932 0.77958 NaN 1 1 Median 1.0658 0.86471 NaN 1 0 Median 61016000 31036000 29980000 0 0 0 4502600 2003500 2499100 38828000 19882000 18946000 6074400 3039600 3034700 8414500 4602700 3811800 3196600 1508000 1688600 34553 3302 36320 181579;181580;181581;181582;181583;181584;181585;181586;181587;181588 183791;183792;183793;183794;183795;183796;183797;183798;183799;183800;183801 183792 11 TVIPGMPTVIPPGLTR KRKRSRWNQDTMEQKTVIPGMPTVIPPGLT VIPGMPTVIPPGLTREQERAYIVQLQIEDL K T V T R E 0 1 0 0 0 0 0 2 0 2 1 0 1 0 4 0 3 0 0 2 0 0 16 0 1647.9382 Q15637;F8WEV5;C9J792 Q15637 31 46 SF1 Splicing factor 1 yes no 2 8.7485E-10 102.66 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 1 8 12 6 1 0.62218 0.57467 14.791 32 Median 0.54311 0.53482 5.1556 4 0 Median 0.5349 0.47563 NaN 1 0 Median 0.60376 0.60029 14.553 8 0 Median 0.67517 0.57826 8.3602 12 0 Median 0.55431 0.56633 23.578 6 0 Median 0.6578 0.57989 NaN 1 0 Median 155480000 97201000 58278000 6060900 3906800 2154000 407640 281580 126050 137610000 85929000 51678000 4636700 2676700 1960000 6623000 4317300 2305700 142760 88864 53895 34554 2959 36321;36322 181589;181590;181591;181592;181593;181594;181595;181596;181597;181598;181599;181600;181601;181602;181603;181604;181605;181606;181607;181608;181609;181610;181611;181612;181613;181614;181615;181616;181617;181618;181619;181620 183802;183803;183804;183805;183806;183807;183808;183809;183810;183811;183812;183813;183814;183815;183816;183817;183818;183819;183820;183821;183822;183823;183824;183825;183826;183827;183828;183829 183809 1630 27 TVIQSLTMYPR QQLMEQSPLPMLLMRTVIQSLTMYPRLGGF LLMRTVIQSLTMYPRLGGFVMNILSRLIMK R T V P R L 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 1 2 0 1 1 0 0 11 0 1307.6908 Q92797 Q92797 1001 1011 SYMPK Symplekin yes yes 2 0.00011141 122.13 By MS/MS By matching 1 1 1.1961 1.1426 10.659 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96379 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4845 1.232 NaN 1 0 Median 16793000 7725200 9067800 0 0 0 0 0 0 15698000 7269700 8428400 0 0 0 0 0 0 1094800 455440 639400 34555 3558 36323 181621;181622 183830;183831;183832;183833 183831 4 TVISNWIK LRKRKTFEDNIRKNRTVISNWIKYAQWEES DNIRKNRTVISNWIKYAQWEESLKEIQRAR R T V I K Y 0 0 1 0 0 0 0 0 0 2 0 1 0 0 0 1 1 1 0 1 0 0 8 0 959.54402 Q5JY65;Q9BZJ0 Q5JY65 228 235 CRNKL1 Crooked neck-like protein 1 yes no 2 0.036811 37.558 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.1355 1.0242 15.062 5 Median 1.3113 1.3318 NaN 1 0 Median 1.1216 1.0131 NaN 1 0 Median 0.97693 1.0242 NaN 1 0 Median 1.1355 1.0073 NaN 1 0 Median 1.3048 1.3397 NaN 1 0 Median NaN NaN NaN 0 0 Median 7702200 3633100 4069100 902430 391000 511430 195180 97065 98119 5589000 2690500 2898500 241260 119470 121790 774370 335100 439270 0 0 0 34556 3061 36324 181623;181624;181625;181626;181627 183834;183835 183835 2 TVISQSLSK QGGTTAIPGAFGCGKTVISQSLSKYSNSDV AFGCGKTVISQSLSKYSNSDVIIYVGCGER K T V S K Y 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 3 1 0 0 1 0 0 9 0 961.54441 P38606 P38606 257 265 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.00061082 109.71 By MS/MS By MS/MS By MS/MS 1 1 1 1.2549 1.114 10.677 3 Median 1.1738 1.1041 NaN 1 0 Median 1.3374 1.114 NaN 1 0 Median 1.2549 1.3341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45409000 19579000 25830000 10891000 5066000 5825300 31706000 13335000 18371000 2811900 1178300 1633600 0 0 0 0 0 0 0 0 0 34557 2276 36325 181628;181629;181630 183836;183837;183838;183839;183840 183840 5 TVITEEFK DDGVGNQLGALVHQRTVITEEFKVPDKMVG GALVHQRTVITEEFKVPDKMVGFIIGRGGE R T V F K V 0 0 0 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 8 0 965.50696 Q96I24 Q96I24 76 83 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.01108 75.854 By MS/MS 1 1.2814 1.3029 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2814 1.3029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3706400 1764600 1941800 0 0 0 0 0 0 3706400 1764600 1941800 0 0 0 0 0 0 0 0 0 34558 3673 36326 181631 183841 183841 1 TVITEEFKVPDK DDGVGNQLGALVHQRTVITEEFKVPDKMVG HQRTVITEEFKVPDKMVGFIIGRGGEQISR R T V D K M 0 0 0 1 0 0 2 0 0 1 0 2 0 1 1 0 2 0 0 2 0 0 12 1 1404.75 Q96I24 Q96I24 76 87 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 0.00039809 73.951 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 3 4 4 0.96377 0.99207 23.133 18 Median 0.85893 0.8064 18.338 2 0 Median 1.1757 1.1042 NaN 1 0 Median 0.90699 0.98622 7.3592 4 0 Median 1.1278 1.0414 40.141 3 1 Plateau 0.90622 0.98299 8.2839 4 0 Median 1.4299 1.2475 21.686 4 0 Median 213590000 111770000 101820000 22019000 13122000 8897000 1468100 638010 830050 110580000 58547000 52033000 13722000 7397700 6324100 37939000 19524000 18415000 27865000 12540000 15325000 34559 3673 36327 181632;181633;181634;181635;181636;181637;181638;181639;181640;181641;181642;181643;181644;181645;181646;181647;181648;181649 183842;183843;183844;183845;183846;183847;183848;183849;183850;183851;183852;183853;183854;183855;183856;183857;183858;183859;183860 183846 19 TVITPDPNLSIDQVGVPR VRGNLMGKRVDFSARTVITPDPNLSIDQVG TPDPNLSIDQVGVPRSIAANMTFAEIVTPF R T V P R S 0 1 1 2 0 1 0 1 0 2 1 0 0 0 3 1 2 0 0 3 0 0 18 0 1920.0316 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 365 382 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2;3 8.311E-14 155.42 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 4 1 0.50024 0.5304 11.282 8 Median 0.65517 0.61913 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50614 0.55163 NaN 1 0 Median 0.72423 0.63591 NaN 1 0 Median 0.4831 0.49603 4.3425 4 0 Median 0.67106 0.55475 NaN 1 0 Median 41487000 25860000 15627000 6216600 3729600 2487000 0 0 0 12851000 8145600 4705400 597550 327920 269630 21465000 13456000 8009100 357140 200930 156210 34560 486 36328 181650;181651;181652;181653;181654;181655;181656;181657 183861;183862;183863;183864;183865;183866;183867;183868;183869;183870 183866 10 TVIVAALDGTFQR PDIVEFCEAMANAGKTVIVAALDGTFQRKP GKTVIVAALDGTFQRKPFGAILNLVPLAES K T V Q R K 2 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 2 0 0 2 0 0 13 0 1389.7616 P04183;K7ES52;K7ERJ1;K7ERV3 P04183 118 130 TK1 Thymidine kinase, cytosolic;Thymidine kinase yes no 2 4.8234E-07 107.83 By MS/MS By MS/MS 1 1 1.1799 1.0576 1.2233 2 Median 1.1228 1.0667 NaN 1 0 Median 1.2398 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32380000 15378000 17002000 24048000 11542000 12506000 8332500 3836400 4496200 0 0 0 0 0 0 0 0 0 0 0 0 34561 1847 36329 181658;181659 183871;183872;183873;183874 183872 4 TVIVHGFTLGEK SLLTSVAARKRAPYKTVIVHGFTLGEKGEK PYKTVIVHGFTLGEKGEKMSKSLGNVIHPD K T V E K G 0 0 0 0 0 0 1 2 1 1 1 1 0 1 0 0 2 0 0 2 0 0 12 0 1299.7187 Q9NSE4 Q9NSE4 650 661 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.012955 35.944 By MS/MS By matching By matching By matching 1 1 1 1 1.0597 0.94909 6.5341 4 Median 0.97899 0.95423 NaN 1 0 Median 1.1472 0.94397 NaN 1 0 Median 0.88316 0.83578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.176 0.95759 NaN 1 0 Median 69526000 33386000 36140000 5357600 2706200 2651500 14437000 6850100 7586900 49587000 23761000 25826000 0 0 0 0 0 0 144020 68928 75094 34562 4103 36330 181660;181661;181662;181663 183875 183875 1 TVIVHGFTLGEKGEK SLLTSVAARKRAPYKTVIVHGFTLGEKGEK TVIVHGFTLGEKGEKMSKSLGNVIHPDVVV K T V E K M 0 0 0 0 0 0 2 3 1 1 1 2 0 1 0 0 2 0 0 2 0 0 15 1 1613.8777 Q9NSE4 Q9NSE4 650 664 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3;4 0.0009943 44.294 By MS/MS 3 0.868 0.91381 27.955 3 Median 0.868 0.91381 27.955 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12665000 6384600 6280500 12665000 6384600 6280500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34563 4103 36331 181664;181665;181666 183876;183877;183878;183879 183876 4 TVIVNMVDVAK PRLIAKVEGKGNGIKTVIVNMVDVAKALNR NGIKTVIVNMVDVAKALNRPPTYPTKYFGC K T V A K A 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 4 0 0 11 0 1187.6584 P55010;H0YK11;H0YMJ8;H0YM54;H0YLZ1;H0YN40;H0YK29 P55010 34 44 EIF5 Eukaryotic translation initiation factor 5 yes no 2 0.00041805 70.1 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 4 4 1 1.2278 1.0961 22.684 12 Median 0.98959 0.92707 32.726 2 0 Median 1.1325 0.97022 NaN 1 0 Median 1.5587 1.4874 33.493 4 1 Linear 1.2805 1.0979 2.0999 4 1 Median NaN NaN NaN 0 0 Median 0.82603 0.76945 NaN 1 0 Median 51147000 21783000 29365000 9727300 4178500 5548800 2507300 1060800 1446500 19080000 8309200 10771000 19434000 8085100 11349000 0 0 0 398740 149140 249590 34564 2489 36332;36333 181667;181668;181669;181670;181671;181672;181673;181674;181675;181676;181677;181678 183880;183881;183882;183883;183884;183885;183886;183887 183881 1173 8 TVIVTGANTGIGK VTGGACPSKATIPGKTVIVTGANTGIGKQT GKTVIVTGANTGIGKQTALELARRGGNIIL K T V G K Q 1 0 1 0 0 0 0 3 0 2 0 1 0 0 0 0 3 0 0 2 0 0 13 0 1229.698 Q8NBN7;G8JLA1 Q8NBN7 40 52 RDH13 Retinol dehydrogenase 13 yes no 2 0.0002491 79.659 By MS/MS By matching 1 1 0.83919 0.74469 4.1359 2 Median 0.83288 0.76679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84554 0.72323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13199000 7135300 6064000 12609000 6869300 5739700 0 0 0 0 0 0 590310 266020 324290 0 0 0 0 0 0 34565 3409 36334 181679;181680 183888;183889 183889 2 TVKEEAEKPER QAGKKSLEDQVEMLRTVKEEAEKPEREAKE EMLRTVKEEAEKPEREAKEQHQKLWEEQLA R T V E R E 1 1 0 0 0 0 4 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 11 2 1314.6779 K7ELL7;P14314 K7ELL7 178 188 PRKCSH Glucosidase 2 subunit beta yes no 2;3 0.0001636 68.44 By MS/MS By MS/MS 3 2 0.79876 0.86471 13.291 5 Median 0.79876 0.86471 11.205 3 0 Plateau 0.99642 0.94787 1.0319 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5030400 2454700 2575700 1459200 778610 680570 3571200 1676100 1895100 0 0 0 0 0 0 0 0 0 0 0 0 34566 1378 36335 181681;181682;181683;181684;181685 183890;183891;183892;183893;183894;183895;183896;183897;183898;183899 183896 10 TVKEVLPALENNKEQIQK TRKCYRMVGGVLVERTVKEVLPALENNKEQ EVLPALENNKEQIQKIIETLTQQLQAKGKE R T V Q K I 1 0 2 0 0 2 3 0 0 1 2 3 0 0 1 0 1 0 0 2 0 0 18 2 2080.1528 Q9UHV9 Q9UHV9 82 99 PFDN2 Prefoldin subunit 2 yes yes 3;4 7.2171E-07 82.007 By MS/MS 2 0.89591 0.97022 1.1606 2 Median 0.89591 0.97022 1.1606 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12105000 5862200 6242800 12105000 5862200 6242800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34567 4284 36336 181686;181687 183900;183901;183902 183900 3 TVKGPDGLTAFEATDNQAIK DLDEVKDYVAKGADKTVKGPDGLTAFEATD DGLTAFEATDNQAIKALLQ___________ K T V I K A 3 0 1 2 0 1 1 2 0 1 1 2 0 1 1 0 3 0 0 1 0 0 20 1 2075.0535 C9JL85;P58546 C9JL85 29 48 MTPN Myotrophin yes no 3 0.0083516 22.902 By MS/MS By matching 1 1 1.1027 1.081 16.987 2 Median 1.0237 0.95864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1878 1.219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4669100 2146600 2522400 3469100 1645200 1823800 0 0 0 1200000 501420 698590 0 0 0 0 0 0 0 0 0 34568 706 36337 181688;181689 183903 183903 1 TVKHPTLLQDPDLR FVEKRRAALERYLQRTVKHPTLLQDPDLRQ RTVKHPTLLQDPDLRQFLESSELPRAVNTQ R T V L R Q 0 1 0 2 0 1 0 0 1 0 3 1 0 0 2 0 2 0 0 1 0 0 14 1 1631.8995 O60749;D6RC15 O60749 246 259 SNX2 Sorting nexin-2 yes no 3 0.00025874 59.709 By MS/MS 1 0.76521 0.76808 NaN 1 Median 0.76521 0.76808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7874200 3928000 3946200 7874200 3928000 3946200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34569 1629 36338 181690 183904;183905 183904 2 TVKQPVYVVDVSK MHRFGPIPLGSLGWKTVKQPVYVVDVSKGI WKTVKQPVYVVDVSKGIVNAVKDPDANGKS K T V S K G 0 0 0 1 0 1 0 0 0 0 0 2 0 0 1 1 1 0 1 5 0 0 13 1 1460.8239 A0A3B3ISG8;Q16795 A0A3B3ISG8 235 247 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 3 0.0010351 44.968 By MS/MS 1 0.84408 0.82317 NaN 1 Median 0.84408 0.82317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5984200 2795500 3188800 5984200 2795500 3188800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34570 424 36339 181691 183906;183907 183907 2 TVLAAAYGEK LWILLILLFEQYVTKTVLAAAYGEKDAILE QYVTKTVLAAAYGEKDAILEADTEFWFSVC K T V E K D 3 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1021.5444 Q9H583;Q5T3Q7 Q9H583 1427 1436 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.0040958 54.416 By MS/MS By MS/MS 1 1 1.3197 1.2892 62.949 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.806 2.012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96436 0.82604 NaN 1 0 Median 8740900 3560700 5180200 0 0 0 0 0 0 2347900 753540 1594300 0 0 0 0 0 0 6393000 2807100 3585900 34571 3086 36340 181692;181693 183908;183909;183910 183908 3 TVLDPVTGDLSDTR FLYLNIGLQNGVLLRTVLDPVTGDLSDTRT RTVLDPVTGDLSDTRTRYLGSRPVKLFRVR R T V T R T 0 1 0 3 0 0 0 1 0 0 2 0 0 0 1 1 3 0 0 2 0 0 14 0 1487.7468 Q15393 Q15393 677 690 SF3B3 Splicing factor 3B subunit 3 yes yes 2 2.4918E-11 145.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 3 4 2 1 0.93733 0.89652 28.432 14 Median 0.85119 0.79882 61.361 3 0 Median 1.0565 0.87235 9.6875 2 0 Median 0.84865 0.90204 2.8019 2 0 Median 1.015 0.8891 23.345 4 0 Median 0.87067 0.88277 4.3851 2 2 Median 1.1495 0.98881 NaN 1 0 Median 267510000 139990000 127520000 31348000 16294000 15054000 43617000 21188000 22428000 148540000 80217000 68324000 18334000 9091100 9243300 23824000 12665000 11159000 1847100 535600 1311500 34572 2946 36341 181694;181695;181696;181697;181698;181699;181700;181701;181702;181703;181704;181705;181706;181707;181708;181709 183911;183912;183913;183914;183915;183916;183917;183918;183919;183920;183921;183922;183923;183924;183925;183926;183927;183928;183929;183930;183931;183932 183911 22 TVLDQQQTPSR QVRRDYLKEAVTTLKTVLDQQQTPSRLAVT TTLKTVLDQQQTPSRLAVTRVIQALAMKGD K T V S R L 0 1 0 1 0 3 0 0 0 0 1 0 0 0 1 1 2 0 0 1 0 0 11 0 1271.647 P42704 P42704 1129 1139 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 1.1686E-09 172.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 1.3847 1.1758 18.367 6 Median 0.85944 0.83105 NaN 1 0 Median 1.2849 1.0644 NaN 1 0 Median 1.001 1.0856 NaN 1 1 Median 1.5303 1.2989 2.7879 2 0 Median NaN NaN NaN 0 0 Median 1.6334 1.3429 NaN 1 1 Median 35030000 15167000 19862000 4330500 2432700 1897700 27478000 11422000 16056000 1386000 625160 760790 1318000 486050 831920 0 0 0 516650 201080 315570 34573 2315 36342 181710;181711;181712;181713;181714;181715 183933;183934;183935;183936;183937;183938;183939 183936 7 TVLEGSTASTSPADHSALPNQSLTVR RESYDPDVIPLFDKRTVLEGSTASTSPADH PADHSALPNQSLTVRESEVLKTSDSKEGGE R T V V R E 3 1 1 1 0 1 1 1 1 0 3 0 0 0 2 5 4 0 0 2 0 0 26 0 2638.3198 Q8NFC6 Q8NFC6 1308 1333 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 6.7896E-37 112.48 By matching By MS/MS By MS/MS By matching 1 2 2 1 0.71259 0.71726 6.342 6 Median 0.70506 0.71066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66025 0.70262 6.6893 2 0 Median 0.77006 0.67401 10.102 2 0 Median NaN NaN NaN 0 0 Median 0.88428 0.73451 NaN 1 0 Median 112590000 64000000 48594000 3689800 1440600 2249200 0 0 0 99992000 57671000 42321000 8470900 4733400 3737500 0 0 0 441910 155030 286880 34574 3434 36343 181716;181717;181718;181719;181720;181721 183940;183941;183942;183943;183944;183945;183946 183940 7 TVLELQYVLDK REQLMREEAEQKRLKTVLELQYVLDKLGDD KRLKTVLELQYVLDKLGDDEVRTDLKQGLN K T V D K L 0 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 1 2 0 0 11 0 1319.7337 Q14444;E9PLA9;G3V153 Q14444 148 158 CAPRIN1 Caprin-1 yes no 2 0.00013836 105.2 By matching By MS/MS By MS/MS 1 3 1 1.0875 1.0299 9.4676 5 Median 1.0142 1.0299 NaN 1 0 Median 1.0875 0.95229 6.9799 3 0 Median 1.0892 1.1638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47330000 21218000 26113000 776600 360340 416250 44386000 20045000 24340000 2168200 812120 1356000 0 0 0 0 0 0 0 0 0 34575 2878 36344 181722;181723;181724;181725;181726 183947;183948;183949;183950;183951;183952;183953;183954 183953 8 TVLELQYVLDKLGDDEVR REQLMREEAEQKRLKTVLELQYVLDKLGDD ELQYVLDKLGDDEVRTDLKQGLNGVPILSE K T V V R T 0 1 0 3 0 1 2 1 0 0 4 1 0 0 0 0 1 0 1 3 0 0 18 1 2104.1052 Q14444;E9PLA9;G3V153 Q14444 148 165 CAPRIN1 Caprin-1 yes no 2;3 1.1155E-10 83.314 By MS/MS 2 4.1435 4.1246 204.42 2 Median NaN NaN NaN 0 0 Median 4.1435 4.1246 204.42 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19873000 2633100 17240000 0 0 0 19873000 2633100 17240000 0 0 0 0 0 0 0 0 0 0 0 0 34576 2878 36345 181727;181728 183955;183956 183955 2 TVLFTNAR FATETFAMGINMPARTVLFTNARKFDGKDF GINMPARTVLFTNARKFDGKDFRWISSGEY R T V A R K 1 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 8 0 920.50797 P42285 P42285 495 502 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.015483 50.127 By matching By MS/MS By matching 1 1 1 1.1093 1.0874 14.611 3 Median 1.2524 1.2481 NaN 1 0 Median 1.1093 0.93197 NaN 1 0 Median 0.98876 1.0874 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16118000 7906300 8211700 1604100 563860 1040200 6716400 3365600 3350800 7797600 3976900 3820700 0 0 0 0 0 0 0 0 0 34577 2309 36346 181729;181730;181731 183957 183957 1 TVLGEYNLFSR AAEAEPPAVSETTERTVLGEYNLFSRKIEE TTERTVLGEYNLFSRKIEEILKQKNVSYVS R T V S R K 0 1 1 0 0 0 1 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 11 0 1297.6667 Q9UK61;A0A087X0F1 Q9UK61 1020 1030 FAM208A Protein FAM208A yes no 2 0.00016921 98.249 By matching By matching By MS/MS By matching 1 1 2 2 1.0648 1.0626 9.3236 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0383 1.1532 NaN 1 0 Median 1.3254 1.1504 NaN 1 0 Median 0.99451 1.0438 2.4034 2 1 Median 1.1761 0.97543 12.223 2 0 Median 11133000 5305500 5827400 0 0 0 0 0 0 1468500 743580 724900 101690 37551 64140 9159700 4352500 4807200 403120 171960 231160 34578 4307 36347 181732;181733;181734;181735;181736;181737 183958;183959;183960 183959 3 TVLGQQILGQLDSSSLALPSEAK ______________________________ GQLDSSSLALPSEAKLKLAGSSGRGGQTVK R T V A K L 2 0 0 1 0 3 1 2 0 1 5 1 0 0 1 4 1 0 0 1 0 0 23 0 2354.2693 Q99959 Q99959 15 37 PKP2 Plakophilin-2 yes yes 3 0.041756 10.399 By MS/MS By MS/MS 1 2 0.70793 0.69894 6.4448 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63886 0.66416 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7195 0.72636 5.4435 2 0 Median NaN NaN NaN 0 0 Median 3767000 2086300 1680700 0 0 0 0 0 0 1131900 640100 491770 0 0 0 2635200 1446200 1189000 0 0 0 34579 3773 36348 181738;181739;181740 183961;183962;183963 183962 3 TVLGTPEVLLGALPGAGGTQR VAISCQYRIATKDRKTVLGTPEVLLGALPG EVLLGALPGAGGTQRLPKMVGVPAALDMML K T V Q R L 2 1 0 0 0 1 1 5 0 0 4 0 0 0 2 0 3 0 0 2 0 0 21 0 2006.116 H0YFD6;P40939;A0A2R8YG21;A0A2R8Y688 H0YFD6 167 187 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2;3 7.4342E-09 59.871 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 0.86874 0.86109 8.595 7 Median 0.83164 0.81314 7.5655 2 0 Median 1.0227 0.88432 3.7647 2 0 Median 0.81962 0.84606 3.5418 2 1 Median 1.1981 1.0181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57919000 29772000 28147000 4120700 2195300 1925400 38033000 19357000 18676000 15306000 8003600 7302800 458320 215560 242760 0 0 0 0 0 0 34580 1180 36349 181741;181742;181743;181744;181745;181746;181747 183964;183965;183966;183967;183968;183969;183970 183968 7 TVLIACNVK CLPGKKGGYTSGTFRTVLIACNVKQMSKDA TSGTFRTVLIACNVKQMSKDAQPSFSAEDI R T V V K Q 1 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1016.5689 P25205;J3KQ69;A0A499FHX9 P25205 258 266 MCM3 DNA replication licensing factor MCM3 yes no 2 0.010839 47.849 By MS/MS 1 1.4394 1.2641 NaN 1 Median NaN NaN NaN 0 0 Median 1.4394 1.2641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3378800 1424400 1954400 0 0 0 3378800 1424400 1954400 0 0 0 0 0 0 0 0 0 0 0 0 34581 2129 36350 181748 183971 183971 1 TVLIMELINNVAK KGGKIGLFGGAGVGKTVLIMELINNVAKAH GKTVLIMELINNVAKAHGGYSVFAGVGERT K T V A K A 1 0 2 0 0 0 1 0 0 2 2 1 1 0 0 0 1 0 0 2 0 0 13 0 1456.8323 P06576;H0YH81;F8W079;F8W0P7;H0YI37 P06576 213 225 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 0.00073699 66.435 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 4 2 2 1 1 1.2771 1.1319 18.996 15 Median 0.98242 0.97674 7.9805 5 0 Median 1.3141 1.1143 10.498 4 0 Median 1.1369 1.1371 0.6395 2 0 Median 1.5674 1.3863 7.9579 2 0 Median 1.8378 1.8221 NaN 1 0 Median 1.439 1.2395 NaN 1 0 Median 98797000 42132000 56665000 21687000 10175000 11512000 73614000 30417000 43197000 2783700 1285300 1498400 242190 85665 156530 363510 132700 230810 106120 35827 70290 34582 1872 36351;36352 181749;181750;181751;181752;181753;181754;181755;181756;181757;181758;181759;181760;181761;181762;181763 183972;183973;183974;183975;183976;183977;183978;183979 183979 632 8 TVLITGANSGLGR QRLRRGGDPGLMHGKTVLITGANSGLGRAT GKTVLITGANSGLGRATAAELLRLGARVIM K T V G R A 1 1 1 0 0 0 0 3 0 1 2 0 0 0 0 1 2 0 0 1 0 0 13 0 1257.7041 Q9HBH5 Q9HBH5 45 57 RDH14 Retinol dehydrogenase 14 yes yes 2 7.5519E-07 103.22 By MS/MS By MS/MS By matching 1 1 1 2.0477 1.7131 21.568 3 Median 1.3263 1.2404 NaN 1 0 Median 2.0477 1.7131 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.2248 1.8674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30537000 13370000 17166000 26711000 11916000 14795000 3262000 1278400 1983600 0 0 0 563830 176160 387660 0 0 0 0 0 0 34583 4018 36353 181764;181765;181766 183980;183981;183982 183980 3 TVLLLADQMISR LEDLFNFCSRKFSLKTVLLLADQMISRIEY SLKTVLLLADQMISRIEYIHSKNFIHRDVK K T V S R I 1 1 0 1 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 1 0 0 12 0 1358.7592 P49674;H0Y645;B0QY35;B0QY34;J3QQI9;B0QY36;H0Y2N6;P48730;H7BYT1 P49674 104 115 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 2 2.5339E-05 96.89 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 0.86779 0.79931 28.134 5 Median NaN NaN NaN 0 0 Median 1.584 1.3494 NaN 1 0 Median 0.81028 0.79931 NaN 1 0 Median 1.2237 1.0649 NaN 1 0 Median 0.67112 0.67542 NaN 1 0 Median 0.86779 0.76179 NaN 1 0 Median 16264000 8055800 8208300 0 0 0 1587900 702930 884920 11506000 5797400 5708700 2306600 997600 1309000 540030 368160 171870 323560 189700 133870 34584 2390;1248 36354 181767;181768;181769;181770;181771 183983;183984;183985;183986;183987 183986 5 TVLMLADQMISR LEDLFNFCSRRFTMKTVLMLADQMISRIEY TMKTVLMLADQMISRIEYVHTKNFIHRDIK K T V S R I 1 1 0 1 0 1 0 0 0 1 2 0 2 0 0 1 1 0 0 1 0 0 12 0 1376.7156 U3KPX3;A0A590UJ43;P48729;D6REM4;E7ETM0;Q8N752 U3KPX3 112 123 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.0030408 72.006 By MS/MS By MS/MS 2 1 1.2367 1.2389 107.37 3 Median 3.0786 2.9808 124.17 2 2 Median NaN NaN NaN 0 0 Median 1.0368 1.0221 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24299000 3922300 20377000 21238000 2487100 18751000 0 0 0 3061000 1435200 1625800 0 0 0 0 0 0 0 0 0 34585 481 36355 181772;181773;181774 183988;183989;183990 183988 3 TVLNQILR PPDTQKFLRFAETHRTVLNQILRQSTTHLA RFAETHRTVLNQILRQSTTHLADGPFAVLV R T V L R Q 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 955.58147 Q7Z6Z7;H0Y659 Q7Z6Z7 3964 3971 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0023 111.28 By MS/MS By MS/MS By matching 3 3 1 1.2444 1.0675 12.173 7 Median 1.0687 1.0494 12.471 3 0 Median 1.325 1.1148 12.52 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2929 1.0765 NaN 1 0 Median 73935000 34538000 39396000 46282000 22300000 23983000 27147000 11972000 15176000 0 0 0 0 0 0 0 0 0 504950 266940 238020 34586 3253 36356 181775;181776;181777;181778;181779;181780;181781 183991;183992;183993;183994;183995;183996;183997 183991 7 TVLNSEVLEQR LVEVIEEVNKVKQEKTVLNSEVLEQRKVLE KQEKTVLNSEVLEQRKVLEKCNRVSMLAVE K T V Q R K 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 11 0 1286.683 A0MZ66 A0MZ66 187 197 KIAA1598 Shootin-1 yes yes 2 1.3346E-05 101.65 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34587 490 36357 181782 183998 183998 1 TVLPFSQEFQR LPNYCYNGSTNRFVRTVLPFSQEFQRDKQP RFVRTVLPFSQEFQRDKQPNAQPQYLHGSK R T V Q R D 0 1 0 0 0 2 1 0 0 0 1 0 0 2 1 1 1 0 0 1 0 0 11 0 1350.6932 Q7L576 Q7L576 867 877 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 2 0.0024672 71.451 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.88388 1.0755 16.768 4 Linear 0.8725 0.84367 NaN 1 1 Median 0.85749 0.74725 NaN 1 0 Median 0.9792 1.0767 NaN 1 0 Median 0.8954 0.76252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18428000 9339800 9088300 4701500 2479900 2221600 1197900 615020 582900 10500000 5217000 5283300 2028400 1027900 1000400 0 0 0 0 0 0 34588 3224 36358 181783;181784;181785;181786 183999;184000;184001 184000 3 TVLPTVPESPEEEVK NRGRYVDGLFLPPSKTVLPTVPESPEEEVK TVLPTVPESPEEEVKASQLSVQQNKLSVQS K T V V K A 0 0 0 0 0 0 4 0 0 0 1 1 0 0 3 1 2 0 0 3 0 0 15 0 1652.8509 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 100 114 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.00032688 66.262 By MS/MS By MS/MS By MS/MS By matching 1 2 1 3 0.73249 0.67372 17.483 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61375 0.67372 NaN 1 0 Median 0.6985 0.60151 10.374 2 0 Median 0.88556 0.91575 NaN 1 0 Median 0.84024 0.68819 16.027 3 0 Median 13089000 7761600 5327800 0 0 0 0 0 0 6920600 4334200 2586400 1395200 827850 567310 3968300 2175300 1793000 805380 424350 381030 34589 1650 36359 181787;181788;181789;181790;181791;181792;181793 184002;184003;184004;184005 184002 3 TVLPTVPESPEEEVKASQLSVQQNK NRGRYVDGLFLPPSKTVLPTVPESPEEEVK EEEVKASQLSVQQNKLSVQSNPSPQLRSVM K T V N K L 1 0 1 0 0 3 4 0 0 0 2 2 0 0 3 3 2 0 0 4 0 0 25 1 2736.4182 O75152;E9PQ61;E9PBY7;A0A1W2PPR9 O75152 100 124 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 0.0019459 25.604 By MS/MS 1 0.67989 0.76166 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67989 0.76166 NaN 1 0 Median NaN NaN NaN 0 0 Median 3334000 1662100 1671800 0 0 0 0 0 0 0 0 0 0 0 0 3334000 1662100 1671800 0 0 0 34590 1650 36360 181794 184006 184006 1 TVLQEIK LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT EFGDFDIKTVLQEIKRGKRMKCTLCSQPGA K T V I K R 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 267 273 PHF6 PHD finger protein 6 yes no 2 0.010865 81.297 By matching By MS/MS By MS/MS 2 2 1 1.2473 1.0915 16.554 5 Median NaN NaN NaN 0 0 Median 1.4415 1.2498 19.151 2 0 Median 1.1238 1.1291 19.85 2 0 Median 1.1132 1.0018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38627000 16737000 21890000 0 0 0 5775500 2213200 3562200 16957000 7347300 9609600 15895000 7176300 8718200 0 0 0 0 0 0 34591 3327 36361 181795;181796;181797;181798;181799 184007;184008;184009 184009 3 TVLQEIKR LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT FGDFDIKTVLQEIKRGKRMKCTLCSQPGAT K T V K R G 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 1 985.59203 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 267 274 PHF6 PHD finger protein 6 yes no 2 0.0050563 88.942 By matching By MS/MS By MS/MS 1 2 2 1.2113 1.1958 8.6998 5 Median 1.1004 1.1756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1398 1.2212 16.708 2 0 Median 1.3387 1.2243 3.3371 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15859000 6737800 9120800 705910 344230 361680 0 0 0 4329200 1798200 2531000 10823000 4595400 6228100 0 0 0 0 0 0 34592 3327 36362 181800;181801;181802;181803;181804 184010;184011;184012;184013 184012 4 TVLQIDDNVTSAVEGINR YEALEKYPMAYVDYKTVLQIDDNVTSAVEG QIDDNVTSAVEGINRMTRALMDSLGPEWRL K T V N R M 1 1 2 2 0 1 1 1 0 2 1 0 0 0 0 1 2 0 0 3 0 0 18 0 1942.996 Q15785 Q15785 110 127 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 8.6968E-15 108.17 By MS/MS 1 0.88027 0.85783 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88027 0.85783 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10835000 5099100 5735400 0 0 0 0 0 0 10835000 5099100 5735400 0 0 0 0 0 0 0 0 0 34593 2971 36363 181805 184014 184014 1 TVLQLSLR LQKIYEANAKRFSRKTVLQLSLRILDILEY AKRFSRKTVLQLSLRILDILEYIHEHEYVH K T V L R I 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 8 0 928.57057 Q99986;H0YJ50 Q99986 153 160 VRK1 Serine/threonine-protein kinase VRK1 yes no 2 0.0014063 145.34 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1457 1.0191 6.4305 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0005 1.0285 1.3089 2 0 Median 1.1881 1.0241 4.7158 2 0 Median 1.1457 1.1546 NaN 1 0 Median 1.1567 0.96423 2.7354 2 0 Median 94075000 43253000 50821000 0 0 0 0 0 0 34635000 15841000 18794000 53527000 24698000 28828000 2501800 1133200 1368600 3411000 1580800 1830200 34594 3775 36364 181806;181807;181808;181809;181810;181811;181812 184015;184016;184017;184018 184016 4 TVLQMDELK AIDIKSAKRELKKARTVLQMDELKCRKRVL ELKKARTVLQMDELKCRKRVLRRLGFATSS R T V L K C 0 0 0 1 0 1 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 9 0 1075.5583 P42285 P42285 844 852 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1.2933 1.23 14.267 6 Median NaN NaN NaN 0 0 Median 1.5231 1.3114 NaN 1 0 Median 1.189 1.27 13.057 2 0 Median 1.3986 1.1866 13.605 2 0 Median NaN NaN NaN 0 0 Median 1.1354 0.95523 NaN 1 0 Median 22421000 10305000 12117000 0 0 0 3907900 1592900 2315000 13680000 6575200 7104800 3573000 1457900 2115100 0 0 0 1260500 678770 581680 34595 2309 36365 181813;181814;181815;181816;181817;181818 184019;184020;184021;184022;184023 184020 5 TVLQRPLSLIQGPPGTGK QGLPDLNHSQVYAVKTVLQRPLSLIQGPPG QRPLSLIQGPPGTGKTVTSATIVYHLARQG K T V G K T 0 1 0 0 0 2 0 3 0 1 3 1 0 0 3 1 2 0 0 1 0 0 18 1 1861.0785 Q92900 Q92900 492 509 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 2.7165E-13 116.51 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 0.68994 0.70692 10.907 9 Median 0.72591 0.75621 9.5323 2 0 Median NaN NaN NaN 0 0 Median 0.64258 0.72858 11.723 2 0 Median 0.69812 0.6709 1.6664 2 0 Median 0.69944 0.78303 3.851 2 0 Median 0.6618 0.5869 NaN 1 0 Median 39610000 22699000 16911000 21185000 11792000 9392300 0 0 0 13902000 8295500 5606700 1493600 790200 703360 2842400 1708000 1134500 187130 112580 74550 34596 3564 36366 181819;181820;181821;181822;181823;181824;181825;181826;181827 184024;184025;184026;184027;184028;184029;184030 184026 7 TVLQYRPVHIDPISR FKTLKDYNTALSLHKTVLQYRPVHIDPISR TVLQYRPVHIDPISRKQMLKFIARYEKKRS K T V S R K 0 2 0 1 0 1 0 0 1 2 1 0 0 0 2 1 1 0 1 2 0 0 15 1 1792.9948 B9ZVT1;Q8IXT5 B9ZVT1 346 360 RBM12B RNA-binding protein 12B yes no 2 0.038162 32.498 By MS/MS 1 0.77403 0.841 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77403 0.841 NaN 1 0 Median NaN NaN NaN 0 0 Median 4352600 2516100 1836600 0 0 0 0 0 0 0 0 0 0 0 0 4352600 2516100 1836600 0 0 0 34597 658 36367 181828 184031 184031 1 TVLRDEIIAWHK RCFAQPNFKVDGILKTVLRDEIIAWHKKTQ ILKTVLRDEIIAWHKKTQEDTSSPLSAAGQ K T V H K K 1 1 0 1 0 0 1 0 1 2 1 1 0 0 0 0 1 1 0 1 0 0 12 1 1479.8198 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3761 3772 TRRAP Transformation/transcription domain-associated protein yes no 3 0.00045228 53.252 By MS/MS By MS/MS 1 1 1.1077 1.1512 11.284 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0753 1.2469 NaN 1 0 Median 1.1412 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11968000 5149900 6818100 0 0 0 0 0 0 11529000 4956400 6573100 438590 193550 245040 0 0 0 0 0 0 34598 991 36368 181829;181830 184032;184033;184034 184032 3 TVLSNVQEELDR GAGGVQSTAKKSGQKTVLSNVQEELDRMTR GQKTVLSNVQEELDRMTRKPDSMVTNSSTE K T V D R M 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1401.71 O43237;J3KRI4 O43237 463 474 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 yes no 2 7.9867E-15 187.64 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1231 1.0488 8.696 4 Median 1.0441 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95505 0.95081 NaN 1 0 Median 1.2082 1.0382 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3333 1.1751 NaN 1 0 Median 21440000 9470700 11970000 1429500 770230 659230 0 0 0 17515000 7591900 9922700 2235800 992740 1243000 0 0 0 260480 115890 144580 34599 1559 36369 181831;181832;181833;181834 184035;184036;184037 184036 3 TVLVIAHR EYLVQEALDRLMDGRTVLVIAHRLSTIKNA DRLMDGRTVLVIAHRLSTIKNANMVAVLDQ R T V H R L 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 907.56034 Q9NRK6;Q9NUT2;X5CMH5;A0A0G2JLV0;A0A087WYD6;Q03519 Q9NRK6 684 691 ABCB10;ABCB8;TAP2 ATP-binding cassette sub-family B member 10, mitochondrial;ATP-binding cassette sub-family B member 8, mitochondrial;Antigen peptide transporter 2 no no 2 0.014439 70.912 By MS/MS 1 1.3681 1.1576 NaN 1 Median NaN NaN NaN 0 0 Median 1.3681 1.1576 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4243900 1802000 2441900 0 0 0 4243900 1802000 2441900 0 0 0 0 0 0 0 0 0 0 0 0 34600 4083;4564 36370 181835 184038 184038 1 TVLVNADGEEVAMR VWKGQSSWGTGESFRTVLVNADGEEVAMRT RTVLVNADGEEVAMRTVKKSSVMRENENGE R T V M R T 2 1 1 1 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 3 0 0 14 0 1502.7399 Q03252 Q03252 562 575 LMNB2 Lamin-B2 yes yes 2 1.7478E-26 163.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 5 10 7 0.92973 0.89236 71.945 28 Median NaN NaN NaN 0 0 Median 0.79771 0.6654 NaN 1 1 Median 0.76814 0.77924 37.412 5 1 Median 1.3527 1.1197 166.9 5 3 Median 0.87606 0.89236 17.911 10 4 Median 1.2979 1.1011 28.036 7 2 Median 361450000 185320000 176140000 0 0 0 792560 408290 384270 41201000 22314000 18887000 24578000 12327000 12251000 274060000 140880000 133180000 20822000 9384500 11438000 34601 2709 36371;36372 181836;181837;181838;181839;181840;181841;181842;181843;181844;181845;181846;181847;181848;181849;181850;181851;181852;181853;181854;181855;181856;181857;181858;181859;181860;181861;181862;181863 184039;184040;184041;184042;184043;184044;184045;184046;184047;184048;184049;184050;184051;184052;184053;184054;184055;184056;184057;184058;184059;184060;184061;184062;184063;184064;184065 184051 1398 27 TVLWNPEDLIPLPIPK HIKKDVTLSKPSFARTVLWNPEDLIPLPIP VLWNPEDLIPLPIPKQDAVPPVPAALQSMP R T V P K Q 0 0 1 1 0 0 1 0 0 2 3 1 0 0 4 0 1 1 0 1 0 0 16 0 1844.0448 M0QY97;Q9UPT8 M0QY97 583 598 ZC3H4 Zinc finger CCCH domain-containing protein 4 yes no 2 0.027717 24.853 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.44447 0.42639 12.826 5 Median 0.45606 0.44534 8.9579 2 0 Median 0.59553 0.5409 NaN 1 0 Median 0.40036 0.42639 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.37262 0.38921 NaN 1 0 Median NaN NaN NaN 0 0 Median 3439200 2375600 1063600 2017500 1380700 636770 100560 61880 38683 1134300 807820 326460 0 0 0 186860 125170 61689 0 0 0 34602 1413 36373 181864;181865;181866;181867;181868 184066;184067;184068 184068 3 TVLWPNGLSLDIPAGR AWMDGSHRDIFVTSKTVLWPNGLSLDIPAG VLWPNGLSLDIPAGRLYWVDAFYDRIETIL K T V G R L 1 1 1 1 0 0 0 2 0 1 3 0 0 0 2 1 1 1 0 1 0 0 16 0 1707.9308 Q07954 Q07954 697 712 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 0.019432 40.589 By MS/MS 1 0.49166 0.4978 NaN 1 Median 0.49166 0.4978 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2194000 1422500 771580 2194000 1422500 771580 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34603 2733 36374 181869 184069 184069 1 TVMEEMR KTAIHKALCDNVDTRTVMEEMRALVSQCNL LCDNVDTRTVMEEMRALVSQCNLYMAARKA R T V M R A 0 1 0 0 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 1 0 0 7 0 894.39392 P49589;B4DKY1 P49589 513 519 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.047302 41.502 By MS/MS By matching By matching 1 1 1 1.0212 1.0111 17.665 3 Median 1.0212 1.0111 NaN 1 0 Median 0.91331 0.79424 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3072 1.1205 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589800 2293600 2296100 1804000 857820 946170 2014200 1039700 974510 0 0 0 771600 396140 375460 0 0 0 0 0 0 34604 2386 36375 181870;181871;181872 184070 184070 1 TVMENFVAFVDK ELLKHKPKATEEQLKTVMENFVAFVDKCCA QLKTVMENFVAFVDKCCAADDKEACFAVEG K T V D K C 1 0 1 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 3 0 0 12 0 1398.6853 CON__P02769 CON__P02769 569 580 yes yes 2 8.7651E-05 104.52 By MS/MS By matching By MS/MS 5 2 3 0.038137 0.038398 148.4 10 Median 0.049371 0.047106 161.36 5 4 Median 0.10845 0.097015 182.4 2 0 Median 0.029459 0.031299 163.91 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89251000 85640000 3611000 56223000 53947000 2275200 21862000 21569000 292580 11166000 10123000 1043200 0 0 0 0 0 0 0 0 0 + 34605 746 36376;36377 181873;181874;181875;181876;181877;181878;181879;181880;181881;181882 184071;184072;184073;184074;184075;184076;184077;184078 184074 265 8 TVMPYISTTPAK ITSDFRIGFGSFVEKTVMPYISTTPAKLRN VEKTVMPYISTTPAKLRNPCTSEQNCTSPF K T V A K L 1 0 0 0 0 0 0 0 0 1 0 1 1 0 2 1 3 0 1 1 0 0 12 0 1307.6795 P05556 P05556 191 202 ITGB1 Integrin beta-1 yes yes 2 0.00055672 75.294 By MS/MS 1 0.77962 0.75153 NaN 1 Median 0.77962 0.75153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20484000 11481000 9003700 20484000 11481000 9003700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34606 1868 36378 181883 184079;184080;184081;184082 184080 4 TVMVQEGNVESAYR ______________________________ RTVMVQEGNVESAYRTLNRILTMDGLIEDI R T V Y R T 1 1 1 0 0 1 2 1 0 0 0 0 1 0 0 1 1 0 1 3 0 0 14 0 1581.7457 P82921 P82921 11 24 MRPS21 28S ribosomal protein S21, mitochondrial yes yes 2 1.5078E-98 229.16 By MS/MS By MS/MS By MS/MS 2 3 1 1.255 1.1391 22.344 6 Median 1.0491 1.0213 2.7802 2 0 Median 1.5373 1.3124 2.7268 3 2 Plateau 0.7217 0.73225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98212000 42685000 55527000 18721000 8829300 9892000 74539000 31182000 43356000 4951900 2673600 2278400 0 0 0 0 0 0 0 0 0 34607 2657 36379;36380 181884;181885;181886;181887;181888;181889 184083;184084;184085;184086;184087;184088;184089;184090;184091 184090 1343 9 TVNAVVEFFQSNK LIVQSQPVEVIYDAKTVNAVVEFFQSNKGL AKTVNAVVEFFQSNKGLDLEQITSATLMKL K T V N K G 1 0 2 0 0 1 1 0 0 0 0 1 0 2 0 1 1 0 0 3 0 0 13 0 1481.7514 Q709C8 Q709C8 640 652 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.0003807 74.944 By MS/MS 1 0.76808 0.76273 NaN 1 Median 0.76808 0.76273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4288700 2431000 1857600 4288700 2431000 1857600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34608 3205 36381 181890 184092;184093 184092 2 TVNDLSSQLSPLDLHPSLK MAFREEIAPINFKVKTVNDLSSQLSPLDLH LSSQLSPLDLHPSLKMSRQLDDLNMRWKLL K T V L K M 0 0 1 2 0 1 0 0 1 0 5 1 0 0 2 4 1 0 0 1 0 0 19 0 2063.0899 P46939;Q5T097 P46939 2751 2769 UTRN Utrophin yes no 3 6.2483E-06 58.073 By MS/MS By MS/MS By matching 2 2 1 0.76371 0.70452 23.237 5 Median 0.6187 0.60021 38.083 2 0 Median 0.77966 0.68113 4.7751 2 0 Median 0.76371 0.82643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17778000 10424000 7354100 12641000 7545200 5095800 1489100 767000 722120 3647600 2111500 1536200 0 0 0 0 0 0 0 0 0 34609 2349 36382 181891;181892;181893;181894;181895 184094;184095 184094 1 TVNELQNLSSAEVVVPR VPSFAAGRVIGKGGKTVNELQNLSSAEVVV NELQNLSSAEVVVPRDQTPDENDQVVVKIT K T V P R D 1 1 2 0 0 1 2 0 0 0 2 0 0 0 1 2 1 0 0 4 0 0 17 0 1853.9847 O00425 O00425 509 525 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 3.4435E-18 122.39 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 3 2 1 1 0.76902 0.73745 53.779 10 Median 0.67925 0.65343 12.864 2 0 Median 0.83942 0.72432 NaN 1 0 Median 0.70863 0.75083 91.966 3 1 Median 0.98462 0.82823 6.5999 2 0 Median 1.0948 1.1499 NaN 1 0 Median 0.78448 0.67508 NaN 1 0 Median 38506000 21950000 16556000 17005000 9572900 7432200 1509900 866050 643860 14324000 8788900 5534700 634040 319260 314780 4361400 2016500 2344900 671850 386240 285610 34610 1462 36383 181896;181897;181898;181899;181900;181901;181902;181903;181904;181905 184096;184097;184098;184099;184100;184101;184102;184103 184101 8 TVNELQNLTAAEVVVPR VPASAAGRVIGKGGKTVNELQNLTAAEVVV NELQNLTAAEVVVPRDQTPDENDQVIVKII K T V P R D 2 1 2 0 0 1 2 0 0 0 2 0 0 0 1 0 2 0 0 4 0 0 17 0 1852.0054 Q9NZI8 Q9NZI8 509 525 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 4.2182E-13 141.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 5 11 5 1.1018 1.0586 24.744 31 Median 0.88101 0.83247 11.831 3 0 Plateau 1.0965 0.95221 2.7662 3 0 Plateau 1.0677 1.0884 32.236 4 0 Median 1.2527 1.0349 13.263 5 0 Median 1.1978 1.2679 10.685 11 0 Median 1.0121 0.86728 22.434 5 0 Median 95081000 44686000 50395000 29696000 15386000 14309000 6137000 2877000 3259900 23428000 10376000 13051000 3787100 1721900 2065200 27002000 11844000 15158000 5031500 2480400 2551100 34611 4188 36384 181906;181907;181908;181909;181910;181911;181912;181913;181914;181915;181916;181917;181918;181919;181920;181921;181922;181923;181924;181925;181926;181927;181928;181929;181930;181931;181932;181933;181934;181935;181936 184104;184105;184106;184107;184108;184109;184110;184111;184112;184113;184114;184115;184116;184117;184118;184119;184120;184121;184122;184123;184124;184125;184126;184127;184128;184129;184130;184131;184132 184104 29 TVNELQNLTSAEVIVPR VPSSTAGRVIGKGGKTVNELQNLTSAEVIV NELQNLTSAEVIVPRDQTPDENEEVIVRII K T V P R D 1 1 2 0 0 1 2 0 0 1 2 0 0 0 1 1 2 0 0 3 0 0 17 0 1882.016 F8W930;Q9Y6M1 F8W930 537 553 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 6.903E-13 141.38 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 2 1 0.91598 0.85648 25.502 8 Median 0.75187 0.72264 NaN 1 0 Median 0.93523 0.80794 NaN 1 0 Median 1.0894 1.1343 31.479 2 0 Median 0.89712 0.75428 NaN 1 0 Median 1.0848 1.1241 2.9973 2 1 Median 0.81943 0.70255 NaN 1 0 Median 22796000 11908000 10888000 7042300 3958300 3084000 1715500 947390 768140 9264900 4584100 4680800 633900 375470 258430 3212600 1513300 1699200 926780 529810 396970 34612 1088 36385 181937;181938;181939;181940;181941;181942;181943;181944 184133;184134;184135;184136;184137;184138;184139 184134 7 TVNEPWTMGFSK RDDRHFVPMGLYIVRTVNEPWTMGFSKSFK IVRTVNEPWTMGFSKSFKKKFFYNKKTKDS R T V S K S 0 0 1 0 0 0 1 1 0 0 0 1 1 1 1 1 2 1 0 1 0 0 12 0 1395.6493 Q8N1G2;H0Y4T0 Q8N1G2 753 764 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 yes no 2 0.00063137 64.439 By MS/MS By MS/MS By matching 1 1 1 1.0516 0.91791 15.697 3 Median 1.1334 1.1394 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.76202 0.83964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0516 0.91791 NaN 1 0 Median 5821600 3085700 2735900 1621500 780350 841110 0 0 0 4086100 2247700 1838400 0 0 0 0 0 0 114030 57622 56409 34613 3358 36386 181945;181946;181947 184140;184141;184142 184142 3 TVNFDIIK YKCTVSLDFIRAIARTVNFDIIKYLYDFL_ FIRAIARTVNFDIIKYLYDFL_________ R T V I K Y 0 0 1 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 1 0 0 8 0 948.52803 O43913 O43913 422 429 ORC5 Origin recognition complex subunit 5 yes yes 2 0.0055542 75.109 By matching By MS/MS By matching 1 1 1 1.0585 1.0234 15.706 3 Median 1.2799 1.2354 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0585 1.0234 NaN 1 0 Median 1.0141 0.90438 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17540000 7878700 9661300 4042600 1705500 2337000 0 0 0 12243000 5570500 6672400 1254600 602680 651920 0 0 0 0 0 0 34614 1599 36387 181948;181949;181950 184143 184143 1 TVNKHGDEIITSTTSNYETQTFSSK KQTKEQSQLTATQTRTVNKHGDEIITSTTS TSTTSNYETQTFSSKTEWRVRAISAANLHL R T V S K T 0 0 2 1 0 1 2 1 1 2 0 2 0 1 0 4 6 0 1 1 0 0 25 1 2787.3199 Q6P2Q9 Q6P2Q9 2046 2070 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 1.0426E-24 100.88 By MS/MS By MS/MS By MS/MS 3 1 2 1.0504 1.1582 15.107 6 Median 1.0592 1.2427 8.8121 3 0 Plateau NaN NaN NaN 0 0 Median 1.0213 1.1833 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.204 1.2944 27.955 2 0 Median NaN NaN NaN 0 0 Median 49616000 22969000 26647000 20827000 9748400 11079000 0 0 0 15032000 7365900 7666300 0 0 0 13757000 5854700 7901900 0 0 0 34615 3157 36388 181951;181952;181953;181954;181955;181956 184144;184145;184146;184147 184145 4 TVNLNLWDTAGQEEYDRLR TVFDNYSAQSAVDGRTVNLNLWDTAGQEEY NLWDTAGQEEYDRLRTLSYPQTNVFVICFS R T V L R T 1 2 2 2 0 1 2 1 0 0 3 0 0 0 0 0 2 1 1 1 0 0 19 1 2292.1135 P84095 P84095 50 68 RHOG Rho-related GTP-binding protein RhoG yes yes 3 0.0090161 23.1 By matching By MS/MS 1 1 0.58556 0.63555 127.23 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2466 0.25849 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3904 1.5626 NaN 1 0 Median NaN NaN NaN 0 0 Median 6478700 3649900 2828800 0 0 0 0 0 0 3761400 2648700 1112700 0 0 0 2717200 1001100 1716100 0 0 0 34616 2667 36389 181957;181958 184148 184148 1 TVNMDYLSLLR DLALHMSLRTYSSKRTVNMDYLSLLRDALV SSKRTVNMDYLSLLRDALVQPLTSQGVDGV R T V L R D 0 1 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 1 1 0 0 11 0 1323.6857 P35251 P35251 993 1003 RFC1 Replication factor C subunit 1 yes yes 2 0.00014249 101.11 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2866 1.2929 9.0044 5 Median 1.1812 1.1869 12.092 2 0 Median 1.3234 1.1385 NaN 1 0 Median 1.1903 1.3079 NaN 1 0 Median 1.5046 1.3251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8006000 3521000 4485000 2636900 1156700 1480200 1715900 684870 1031000 3440500 1601700 1838800 212810 77762 135050 0 0 0 0 0 0 34617 2239 36390 181959;181960;181961;181962;181963 184149;184150;184151;184152;184153 184151 5 TVNNLLK CRILRLKNQLNEDYKTVNNLLKAAVKGSDG NQLNEDYKTVNNLLKAAVKGSDGFWVGKSS K T V L K A 0 0 2 0 0 0 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 7 0 800.4756 Q86UV5;A0A0A0MRS6 Q86UV5 577 583 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.033693 48.174 By matching By MS/MS By matching 1 1 1 1.1752 0.9973 17.036 3 Median NaN NaN NaN 0 0 Median 1.4767 1.3307 NaN 1 0 Median 0.92598 0.9973 NaN 1 0 Median 1.1752 0.98453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3465800 1580400 1885400 0 0 0 478450 169310 309140 1944800 1020700 924040 1042500 390360 652170 0 0 0 0 0 0 34618 3281 36391 181964;181965;181966 184154 184154 1 TVNQLAHALHQDK AFLLTEGSEEKRSAKTVNQLAHALHQDKQL AKTVNQLAHALHQDKQLHAGSLVSVMWPNS K T V D K Q 2 0 1 1 0 2 0 0 2 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1473.7688 O95140 O95140 159 171 MFN2 Mitofusin-2 yes yes 3 0.029677 20.106 By MS/MS By matching 1 1 1.232 1.1713 7.2722 2 Median 1.2176 1.2331 NaN 1 0 Median 1.2465 1.1126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2224700 873070 1351600 1017500 454290 563240 1207200 418780 788410 0 0 0 0 0 0 0 0 0 0 0 0 34619 1747 36392 181967;181968 184155 184155 1 TVNQQTMAAPVVKEEKQPEK PLEPVSTVQVEPAVKTVNQQTMAAPVVKEE TMAAPVVKEEKQPEKVISKDLVIERPRPDS K T V E K V 2 0 1 0 0 3 3 0 0 0 0 3 1 0 2 0 2 0 0 3 0 0 20 2 2254.1627 E7EPN9;Q9Y520 E7EPN9 1123 1142 PRRC2C Protein PRRC2C yes no 4 0.014802 25.888 By MS/MS 1 0.55495 0.65551 NaN 1 Median 0.55495 0.65551 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2443800 1206500 1237300 2443800 1206500 1237300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34620 872 36393 181969 184156 184156 1 TVNTFSQSVSSLFGEDNVR GARGRGGAEKNSYRRTVNTFSQSVSSLFGE FSQSVSSLFGEDNVRAAQKFLARLTERFVL R T V V R A 0 1 2 1 0 1 1 1 0 0 1 0 0 2 0 4 2 0 0 3 0 0 19 0 2085.9967 Q8WY22 Q8WY22 49 67 BRI3BP BRI3-binding protein yes yes 2;3 1.5213E-06 58.487 By MS/MS By MS/MS By MS/MS 3 2 1 1.1326 1.1401 8.4192 6 Median 1.0999 1.0972 3.0228 3 0 Median 1.5025 1.258 10.399 2 0 Median 1.1357 1.151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6353400 2928800 3424700 4163100 2009900 2153200 1460900 585900 874960 729470 332930 396550 0 0 0 0 0 0 0 0 0 34621 3523 36394 181970;181971;181972;181973;181974;181975 184157;184158;184159;184160;184161 184161 5 TVNVVQFEPSK TKVPLVAEKPLKEPKTVNVVQFEPSKGAIG KEPKTVNVVQFEPSKGAIGKAYKKDAKLVM K T V S K G 0 0 1 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 3 0 0 11 0 1246.6558 P41250 P41250 491 501 GARS Glycine--tRNA ligase yes yes 2 0.00018403 100.48 By MS/MS By MS/MS 1 1 0.94514 0.82502 9.6768 2 Median 1.001 0.88345 NaN 1 0 Median 0.8924 0.77046 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35760000 18155000 17605000 33424000 16958000 16466000 2335700 1196600 1139100 0 0 0 0 0 0 0 0 0 0 0 0 34622 2301 36395 181976;181977 184162;184163;184164;184165 184164 4 TVPEELVKPEELSK DKATVLTTERKKRGKTVPEELVKPEELSKY KTVPEELVKPEELSKYRQVASHVGLHSASI K T V S K Y 0 0 0 0 0 0 4 0 0 0 2 2 0 0 2 1 1 0 0 2 0 0 14 1 1596.8611 Q9UMS4;F5GY56;H0YGF3 Q9UMS4 193 206 PRPF19 Pre-mRNA-processing factor 19 yes no 2;3 1.9204E-08 150.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 3 3 3 3 0.8564 0.84621 21.063 15 Median 0.81025 0.7733 5.723 2 0 Median 0.90542 0.84621 NaN 1 0 Median 0.71137 0.73639 30.528 3 0 Median 0.90178 0.9014 17.354 3 0 Median 0.87796 0.93729 8.446 3 0 Median 0.75423 0.65459 30.979 3 0 Median 306360000 173900000 132450000 26536000 14749000 11787000 22799000 11754000 11045000 185220000 109630000 75598000 42551000 21405000 21145000 24170000 13542000 10628000 5080400 2827600 2252800 34623 4334 36396 181978;181979;181980;181981;181982;181983;181984;181985;181986;181987;181988;181989;181990;181991;181992 184166;184167;184168;184169;184170;184171;184172;184173;184174;184175;184176;184177;184178;184179;184180;184181;184182;184183;184184;184185;184186;184187;184188;184189;184190;184191;184192;184193;184194;184195;184196 184193 31 TVPGATTTSSAATETMENVKK SLGTATAVQTGTPQRTVPGATTTSSAATET TTSSAATETMENVKKCKNFLSTLIKLASSG R T V K K C 3 0 1 0 0 0 2 1 0 0 0 2 1 0 1 2 6 0 0 2 0 0 21 1 2123.0416 O00268 O00268 575 595 TAF4 Transcription initiation factor TFIID subunit 4 yes yes 3 7.3193E-12 64.203 By MS/MS By matching 1 1 1.1614 1.2201 34.05 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82776 0.95906 NaN 1 0 Median 1.6296 1.5523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15471000 7205200 8265600 0 0 0 0 0 0 13188000 6517500 6670800 2282400 687670 1594800 0 0 0 0 0 0 34624 1453 36397 181993;181994 184197;184198 184197 2 TVPILFASTVR LKVKAKVRQCLQERRTVPILFASTVRRHPD QERRTVPILFASTVRRHPDKTALIFEGTDT R T V V R R 1 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 2 0 0 2 0 0 11 0 1202.7023 Q6P1M0 Q6P1M0 75 85 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 2 0.00076197 63.076 By MS/MS By matching 1 1 1.1207 1.1767 5.8174 2 Median 1.1521 1.1293 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0902 1.2262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12188000 5534500 6653600 11184000 5074900 6109100 0 0 0 1004200 459650 544540 0 0 0 0 0 0 0 0 0 34625 3152 36398 181995;181996 184199;184200 184199 2 TVPLAGHVGFDSLPDQLVNK MAATDIARQVGEGCRTVPLAGHVGFDSLPD GHVGFDSLPDQLVNKSVSQGFCFNILCVGE R T V N K S 1 0 1 2 0 1 0 2 1 0 3 1 0 1 2 1 1 0 0 3 0 0 20 0 2106.111 B1AMS2;Q14141 B1AMS2 16 35 SEPT6 Septin-6 yes no 3 2.4312E-07 52.814 By matching By MS/MS By MS/MS 1 1 2 1.1165 0.98003 24.249 4 Median NaN NaN NaN 0 0 Median 1.2396 1.124 NaN 1 0 Median 0.67156 0.64323 NaN 1 0 Median 1.1165 0.98003 2.155 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48792000 26510000 22282000 0 0 0 280560 108800 171760 36776000 21018000 15758000 11735000 5383200 6352100 0 0 0 0 0 0 34626 573 36399 181997;181998;181999;182000 184201;184202;184203;184204 184202 4 TVPLYESPR LTIGTIDEIQKLHIRTVPLYESPRKICYQE QKLHIRTVPLYESPRKICYQEVSQCFGVLS R T V P R K 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 1 1 0 1 1 0 0 9 0 1060.5553 Q16531;F5GY55 Q16531 714 722 DDB1 DNA damage-binding protein 1 yes no 2 0.00077811 98.458 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.85573 0.7114 39.056 7 Median 1.1397 1.0859 53.012 2 1 Median 0.8722 0.71101 0.07831 2 0 Median 0.48256 0.56476 24.423 2 0 Median 1.3288 1.1272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84652000 43561000 41091000 15901000 7352900 8547900 42665000 21796000 20869000 18994000 11389000 7604700 7092600 3023600 4069000 0 0 0 0 0 0 34627 2985 36400 182001;182002;182003;182004;182005;182006;182007 184205;184206;184207;184208;184209;184210;184211;184212;184213;184214 184208 10 TVPPVDIVFER RNDHDDDEDEEVISKTVPPVDIVFERDMLT VISKTVPPVDIVFERDMLTQTYDLIERRGT K T V E R D 0 1 0 1 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 3 0 0 11 0 1270.6921 Q12789 Q12789 356 366 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00015337 82.749 By matching By MS/MS By matching By matching 1 2 1 1 0.63135 0.61273 13.197 5 Median NaN NaN NaN 0 0 Median 0.72663 0.61273 NaN 1 0 Median 0.56279 0.62676 13.207 2 0 Median 0.56043 0.48813 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76337 0.64621 NaN 1 0 Median 16589000 10111000 6478100 0 0 0 1000900 609670 391280 15308000 9324600 5983300 200470 135630 64840 0 0 0 79436 40694 38742 34628 2758 36401 182008;182009;182010;182011;182012 184215;184216;184217 184216 3 TVPQSSLTMGQLYEK IQLPSEKAIFLFVDKTVPQSSLTMGQLYEK TVPQSSLTMGQLYEKEKDEDGFLYVAYSGE K T V E K E 0 0 0 0 0 2 1 1 0 0 2 1 1 0 1 2 2 0 1 1 0 0 15 0 1680.8393 P60520;H3BQ50 P60520 83 97 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2 1.7466E-09 106.49 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.97705 0.81839 12.718 5 Median 1.0798 0.97929 NaN 1 0 Median 0.96738 0.79587 1.32 2 0 Median 0.85331 0.81839 NaN 1 1 Median 1.276 1.0391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61815000 31395000 30420000 19140000 9010000 10130000 32394000 16698000 15695000 9044700 5124000 3920700 1236100 562510 673640 0 0 0 0 0 0 34629 2526 36402;36403 182013;182014;182015;182016;182017 184218;184219;184220;184221;184222;184223;184224;184225;184226;184227;184228;184229 184229 1206 12 TVPSTPTLVVPHR GIGGMQQHFFDDEDRTVPSTPTLVVPHRTD DRTVPSTPTLVVPHRTDGFAEAIHSPQVAG R T V H R T 0 1 0 0 0 0 0 0 1 0 1 0 0 0 3 1 3 0 0 3 0 0 13 0 1402.7932 P12270 P12270 2133 2145 TPR Nucleoprotein TPR yes yes 3 9.1313E-05 84.289 By MS/MS By MS/MS 1 1 0.44651 0.43137 6.3138 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42065 0.45107 NaN 1 1 Median 0.47397 0.41254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6893900 4580600 2313300 0 0 0 0 0 0 5485100 3642400 1842700 1408800 938270 470520 0 0 0 0 0 0 34630 1978 36404 182018;182019 184230;184231 184230 2 TVPVEAVTSK STFEDVTQVSSAYQKTVPVEAVTSKTSNIR SAYQKTVPVEAVTSKTSNIRANFENLAKEK K T V S K T 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 3 0 0 10 0 1029.5706 Q14247 Q14247 337 346 CTTN Src substrate cortactin yes yes 2 0.0046162 54.416 By MS/MS By MS/MS By MS/MS By matching 5 4 2 1 0.99141 0.84886 34.969 12 Median 1.2483 1.1958 50.161 5 1 Median 0.99141 0.84886 5.9035 4 0 Median 1.0677 1.0726 41.718 2 0 Median 0.82496 0.69589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39305000 18821000 20484000 13600000 6176400 7423800 22227000 10875000 11352000 3137200 1592800 1544400 341100 177300 163800 0 0 0 0 0 0 34631 2868 36405 182020;182021;182022;182023;182024;182025;182026;182027;182028;182029;182030;182031 184232;184233;184234;184235;184236;184237;184238;184239;184240;184241 184233 10 TVPVGGVVK GSLRLWEVATARCVRTVPVGGVVKSVAWNP TARCVRTVPVGGVVKSVAWNPSPAVCLVAA R T V V K S 0 0 0 0 0 0 0 2 0 0 0 1 0 0 1 0 1 0 0 4 0 0 9 0 854.52255 Q14137 Q14137 450 458 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.056982 29.15 By matching By MS/MS By MS/MS 1 1 4 1.1972 1.0396 9.3319 6 Median NaN NaN NaN 0 0 Median 1.0832 0.97533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1664 1.2062 NaN 1 0 Median 1.2343 1.0396 7.5145 4 0 Median 10368000 4526000 5841900 0 0 0 573710 339990 233720 0 0 0 0 0 0 4490200 1742300 2747900 5304000 2443800 2860200 34632 2856 36406 182032;182033;182034;182035;182036;182037 184242;184243;184244;184245;184246;184247 184242 6 TVPYTDPDHASLK FLMPFPVNYVGECIRTVPYTDPDHASLKIL IRTVPYTDPDHASLKILARLMTAKFLHTEI R T V L K I 1 0 0 2 0 0 0 0 1 0 1 1 0 0 2 1 2 0 1 1 0 0 13 0 1442.7042 Q5JRX3;A0A0A0MRX9;B1APQ0 Q5JRX3 872 884 PITRM1 Presequence protease, mitochondrial yes no 2;3 0.00062138 80.763 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.89415 0.81485 22.511 6 Median 0.66095 0.64803 28.936 2 1 Median 1.0565 0.89646 10.039 2 2 Median 0.72827 0.79152 NaN 1 1 Median 1.1691 0.98854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27144000 14248000 12896000 8437200 5074300 3363000 14209000 6925800 7283400 2711600 1450100 1261500 1785900 798090 987780 0 0 0 0 0 0 34633 3050 36407 182038;182039;182040;182041;182042;182043 184248;184249;184250;184251;184252;184253 184252 6 TVQAAPPALPGPPGAPVNMYSR EEKKAPPPPPTSMPKTVQAAPPALPGPPGA ALPGPPGAPVNMYSRRAAGTRARYVDVLNP K T V S R R 4 1 1 0 0 1 0 2 0 0 1 0 1 0 6 1 1 0 1 2 0 0 22 0 2190.1256 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09;Q8N9G1 O15027 2163 2184 SEC16A Protein transport protein Sec16A yes no 3 1.442E-09 57.293 By MS/MS 1 0.35696 0.3368 NaN 1 Median 0.35696 0.3368 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7008700 4840200 2168500 7008700 4840200 2168500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34634 1513 36408 182044 184254 184254 1 TVQAIVELK RTKMVRTINLYYNNRTVQAIVELKNKPARW LYYNNRTVQAIVELKNKPARWHKAKKVQLT R T V L K N 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 999.59645 Q5T4S7 Q5T4S7 3598 3606 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2 0.0010633 85.67 By MS/MS By MS/MS 2 1 1.1317 1.0047 6.5567 3 Plateau 1.0608 1.0358 8.9324 2 0 Median 1.1317 1.0047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23027000 10889000 12138000 9989900 4682500 5307400 13037000 6206600 6830300 0 0 0 0 0 0 0 0 0 0 0 0 34635 3089 36409 182045;182046;182047 184255;184256 184256 2 TVQAVLTIPK SLTSEFIHDIDRELKTVQAVLTIPKLKLSY DRELKTVQAVLTIPKLKLSYEGELTKSVQE K T V P K L 1 0 0 0 0 1 0 0 0 1 1 1 0 0 1 0 2 0 0 2 0 0 10 0 1068.6543 CON__Q95121 CON__Q95121 305 314 yes yes 2 0.0028498 71.349 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4264700 4264700 0 0 0 0 0 0 0 2812300 2812300 0 1452400 1452400 0 0 0 0 0 0 0 + 34636 791 36410 182048;182049 184257;184258 184258 2 TVQDALESLVAR PFFTLQLDIQSDKIRTVQDALESLVARESV KIRTVQDALESLVARESVQGYTTKTKQEVE R T V A R E 2 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1300.6987 Q14694;H3BQP1;H3BNS8 Q14694 642 653 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes no 2 5.6046E-05 123.63 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.0819 0.98956 8.0407 6 Median 0.98339 0.96603 NaN 1 0 Median 1.072 0.92383 6.2196 2 0 Median 1.0415 1.1149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1706 1.0335 2.7433 2 0 Median 12172000 6131700 6039900 2420400 1174000 1246400 8210400 4178300 4032200 1248600 628700 619900 0 0 0 0 0 0 292170 150690 141480 34637 2894 36411 182050;182051;182052;182053;182054;182055 184259;184260;184261;184262;184263 184263 5 TVQDLKQEIK ELLEAELLKVANKEKTVQDLKQEIKALKEE ANKEKTVQDLKQEIKALKEEIGNVQLEKAQ K T V I K A 0 0 0 1 0 2 1 0 0 1 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1200.6714 Q86UP2;G3V4Y7;H0YJZ8;G3V5G2 Q86UP2 830 839 KTN1 Kinectin yes no 2;3 0.0047321 69.423 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2326 1.1519 85.861 5 Median 1.5452 1.5781 18.564 2 1 Median 1.2326 1.1519 NaN 1 0 Median 0.9244 1.0577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22906 0.20441 NaN 1 1 Median 10817000 5399100 5417700 3695100 1518800 2176300 2465200 1094800 1370400 2057400 976830 1080600 0 0 0 0 0 0 2599100 1808700 790390 34638 3280 36412 182056;182057;182058;182059;182060 184264;184265;184266;184267 184266 4 TVQGPPTSDDIFER VHSSVASATSVATKKTVQGPPTSDDIFERE KTVQGPPTSDDIFEREYKYGAHNYHPLPVA K T V E R E 0 1 0 2 0 1 1 1 0 1 0 0 0 1 2 1 2 0 0 1 0 0 14 0 1560.742 P04181 P04181 33 46 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 1.2581E-05 89.403 By MS/MS By matching By MS/MS By matching 3 2 1 1 0.72956 0.72933 58.745 6 Median 0.67369 0.67283 77.628 3 1 Median 1.0259 0.89474 NaN 1 0 Median 0.48553 0.47737 NaN 1 1 Median 0.97634 0.85836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60400000 37147000 23253000 37692000 23925000 13767000 7081100 3168100 3913000 14907000 9754400 5152500 719890 299410 420480 0 0 0 0 0 0 34639 1846 36413 182061;182062;182063;182064;182065;182066;182067 184268;184269;184270;184271 184270 4 TVQGSGHQEHINIHK FVNDVSEKEQRWGAKTVQGSGHQEHINIHK TVQGSGHQEHINIHKLRENVFQEHQTLKEK K T V H K L 0 0 1 0 0 2 1 2 3 2 0 1 0 0 0 1 1 0 0 1 0 0 15 0 1683.8441 Q14247 Q14247 43 57 CTTN Src substrate cortactin yes yes 4 0.056328 10.787 By MS/MS By matching 3 1 1.187 1.1307 12.957 4 Median NaN NaN NaN 0 0 Median 1.2182 1.0981 15.696 3 0 Median 1.1566 1.1642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1137200 543510 593680 0 0 0 968120 493720 474400 169070 49794 119270 0 0 0 0 0 0 0 0 0 34640 2868 36414 182068;182069;182070;182071 184272 184272 1 TVQHQDSQVNALEVTPDR HTVRFWQAHSGICTRTVQHQDSQVNALEVT HQDSQVNALEVTPDRSMIAAAACVPRLPAH R T V D R S 1 1 1 2 0 3 1 0 1 0 1 0 0 0 1 1 2 0 0 3 0 0 18 0 2035.9923 H3BR38;H3BM50;H3BPU5;H3BR25;H3BPT1;H3BN58;H3BSZ4;A0A0A0MR05;Q9BVC4 H3BR38 37 54 MLST8 Target of rapamycin complex subunit LST8 yes no 3 2.1939E-07 70.335 By MS/MS 1 0.94519 0.78971 NaN 1 Median NaN NaN NaN 0 0 Median 0.94519 0.78971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3636800 1384300 2252500 0 0 0 3636800 1384300 2252500 0 0 0 0 0 0 0 0 0 0 0 0 34641 152 36415 182072 184273 184273 1 TVQIEASTVEIEER YPERVIPGAAEKIERTVQIEASTVEIEERG RTVQIEASTVEIEERGVKLRLTVVDTPGYG R T V E R G 1 1 0 0 0 1 4 0 0 2 0 0 0 0 0 1 2 0 0 2 0 0 14 0 1602.8101 Q15019;B5MCX3;C9J2Q4;C9JB25;H7C310;C9J938;C9IY94;C9IZU3;C9JQJ4;C9JZI2;B5MD47 Q15019 78 91 SEPT2 Septin-2 yes no 2;3 1.3937E-23 199.43 By MS/MS By MS/MS By matching 5 2 1 1.0717 1.0523 14.487 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99216 1.0887 15.5 4 0 Median 1.1933 1.0205 8.2832 2 0 Median NaN NaN NaN 0 0 Median 1.0717 0.80851 NaN 1 0 Median 215800000 104950000 110850000 0 0 0 0 0 0 201140000 98430000 102710000 13384000 5845400 7538300 0 0 0 1269500 672590 596940 34642 2914 36416 182073;182074;182075;182076;182077;182078;182079;182080 184274;184275;184276;184277;184278;184279;184280;184281;184282;184283;184284;184285;184286;184287;184288;184289;184290;184291;184292;184293;184294;184295;184296;184297;184298;184299;184300 184275 27 TVQIPVYDFVSHSR NELILKTLKEITEGKTVQIPVYDFVSHSRK KTVQIPVYDFVSHSRKEETVTVYPADVVLF K T V S R K 0 1 0 1 0 1 0 0 1 1 0 0 0 1 1 2 1 0 1 3 0 0 14 0 1646.8417 A0A2R8Y653;Q9BZX2 A0A2R8Y653 85 98 UCK2 Uridine-cytidine kinase 2 yes no 2;3 0.00062612 65.395 By MS/MS 2 1.0121 0.94655 2.6487 2 Median 1.0121 0.94655 2.6487 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13641000 7186100 6454700 13641000 7186100 6454700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34643 374 36417 182081;182082 184301;184302;184303;184304 184303 4 TVQLTSSELESTLETLK DAHLLVESKNLDFQKTVQLTSSELESTLET QLTSSELESTLETLKAENQPIRDVLKQLIL K T V L K A 0 0 0 0 0 1 3 0 0 0 4 1 0 0 0 3 4 0 0 1 0 0 17 0 1877.9834 P42704 P42704 656 672 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 1.027E-05 81.494 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.0879 1.0514 10.432 7 Median 0.99548 0.98366 9.4167 2 0 Median 1.4579 1.2331 13.462 3 0 Plateau NaN NaN NaN 0 0 Median 1.2442 1.0521 NaN 1 0 Median 0.9478 0.96221 NaN 1 0 Median NaN NaN NaN 0 0 Median 38556000 17055000 21501000 14280000 6840600 7438900 23376000 9784500 13592000 0 0 0 547010 257900 289110 352910 171840 181070 0 0 0 34644 2315 36418 182083;182084;182085;182086;182087;182088;182089 184305;184306;184307;184308 184306 4 TVQPTQSPYPTQLFR PKDPVEVAQPSEVLRTVQPTQSPYPTQLFR TVQPTQSPYPTQLFRTVHVVQPVQAVPEGE R T V F R T 0 1 0 0 0 3 0 0 0 0 1 0 0 1 3 1 3 0 1 1 0 0 15 0 1761.905 A0A0U1RRL5;P32519 A0A0U1RRL5 370 384 ELF1 ETS-related transcription factor Elf-1 yes no 2 0.0018004 38.634 By MS/MS By matching 1 1 0.70811 0.66346 3.767 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60986 0.64602 NaN 1 0 Median 0.82219 0.68137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3445800 2185800 1260000 0 0 0 0 0 0 3286300 2098800 1187500 159490 86980 72506 0 0 0 0 0 0 34645 310 36419 182090;182091 184309 184309 1 TVQPVAMGPDGLPVDASSVSNNYIQTLGR TETTVKKVVKTVTTRTVQPVAMGPDGLPVD DASSVSNNYIQTLGRDFRKNGNGGPGPYVG R T V G R D 2 1 2 2 0 2 0 3 0 1 2 0 1 0 3 3 2 0 1 4 0 0 29 0 2985.4866 C9JZR2;O60716;E9PRE2;E9PKL1 C9JZR2 152 180 CTNND1 Catenin delta-1 yes no 3 0.018392 24.395 By MS/MS By MS/MS 1 1 0.58205 0.5962 14.355 2 Median 0.67399 0.65989 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50265 0.53865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6453600 3717300 2736300 2647600 1625900 1021700 0 0 0 3806100 2091500 1714600 0 0 0 0 0 0 0 0 0 34646 732 36420 182092;182093 184310;184311;184312 184312 2 TVQQHAGETDPVTTMR AEEFTYNPFMRVREKTVQQHAGETDPVTTM VQQHAGETDPVTTMRAVRREKDQFKMPRD_ K T V M R A 1 1 0 1 0 2 1 1 1 0 0 0 1 0 1 0 4 0 0 2 0 0 16 0 1769.8366 H3BPK3;Q16775;H3BV79 H3BPK3 210 225 HAGH Hydroxyacylglutathione hydrolase, mitochondrial yes no 3 3.5654E-05 51.695 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.0302 0.87101 20.084 7 Median 0.77945 0.73361 0.46853 2 0 Median 1.1155 0.93527 16.777 3 0 Median 0.69663 0.66848 NaN 1 0 Median 1.1527 0.95326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35803000 19412000 16391000 20162000 10953000 9209100 7932900 3817900 4115000 6239800 3845200 2394500 1468400 796410 671960 0 0 0 0 0 0 34647 1224 36421 182094;182095;182096;182097;182098;182099;182100 184313;184314;184315;184316;184317;184318;184319;184320;184321;184322;184323;184324;184325;184326;184327;184328 184319 16 TVQSLEIDLDSMR AEVGAAETTLTELRRTVQSLEIDLDSMRNL RRTVQSLEIDLDSMRNLKASLENSLREVEA R T V M R N 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 13 0 1505.7396 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 302 314 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 2.8551E-22 198.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 6 5 12 6 1.2428 1.2128 26.887 37 Median 1.2045 1.2689 12.384 5 0 Median 1.5629 1.343 16.197 3 0 Median 1.2396 1.2157 18.092 6 0 Median 1.1263 0.96674 11.828 5 0 Median 1.4405 1.4324 24.755 12 2 Median 1.2259 0.99187 24.455 6 0 Median 2366900000 1023600000 1343300000 25876000 11494000 14382000 171520000 64946000 106570000 1433500000 633040000 800460000 262510000 119080000 143430000 422330000 172420000 249910000 51210000 22665000 28544000 34648 1869 36422;36423 182101;182102;182103;182104;182105;182106;182107;182108;182109;182110;182111;182112;182113;182114;182115;182116;182117;182118;182119;182120;182121;182122;182123;182124;182125;182126;182127;182128;182129;182130;182131;182132;182133;182134;182135;182136;182137 184329;184330;184331;184332;184333;184334;184335;184336;184337;184338;184339;184340;184341;184342;184343;184344;184345;184346;184347;184348;184349;184350;184351;184352;184353;184354;184355;184356;184357;184358;184359;184360;184361;184362;184363;184364;184365;184366;184367;184368;184369;184370;184371;184372;184373;184374;184375 184335 624 47 TVQSNSPISALAPTGK ENKQFKEEDGLRMRKTVQSNSPISALAPTG VQSNSPISALAPTGKEEGLSTRLLALVVLF K T V G K E 2 0 1 0 0 1 0 1 0 1 1 1 0 0 2 3 2 0 0 1 0 0 16 0 1569.8362 O95292 O95292 201 216 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2 1.7908E-10 113.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 1 1.0081 0.83834 21.706 8 Median 1.0336 0.95173 51.461 2 1 Median 1.1825 0.97758 0.50479 2 1 Median 0.85539 0.80196 NaN 1 0 Median 1.0081 0.83277 7.2185 2 0 Median 0.77809 0.79218 NaN 1 0 Median NaN NaN NaN 0 0 Median 102680000 41418000 61266000 64258000 22890000 41368000 6984200 3248700 3735500 20001000 9349600 10652000 2356300 1126700 1229600 9083300 4802700 4280600 0 0 0 34649 1760 36424 182138;182139;182140;182141;182142;182143;182144;182145 184376;184377;184378;184379;184380;184381;184382;184383;184384;184385;184386;184387;184388;184389 184376 14 TVQSNSPISALAPTGKEEGLSTR ENKQFKEEDGLRMRKTVQSNSPISALAPTG SALAPTGKEEGLSTRLLALVVLFFIVGVII K T V T R L 2 1 1 0 0 1 2 2 0 1 2 1 0 0 2 4 3 0 0 1 0 0 23 1 2342.2078 O95292 O95292 201 223 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 3 0.013802 33.425 By MS/MS By matching By matching 1 1 1 0.6733 0.70388 18.986 3 Median 0.6733 0.70388 NaN 1 0 Median 0.63205 0.59258 NaN 1 0 Median 0.83889 0.86582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14322000 8219600 6102900 9868000 5957100 3910900 1179100 615610 563530 3275300 1646900 1628400 0 0 0 0 0 0 0 0 0 34650 1760 36425 182146;182147;182148 184390 184390 0 TVQTAAANAASTAASSAAQNAFK EKAQQEFATGVMSNKTVQTAAANAASTAAS AASTAASSAAQNAFKGNQI___________ K T V F K G 10 0 2 0 0 2 0 0 0 0 0 1 0 1 0 3 3 0 0 1 0 0 23 0 2151.0556 O15126;A0A087WXB0;A0A087WU14 O15126 312 334 SCAMP1 Secretory carrier-associated membrane protein 1 yes no 2;3 4.3641E-35 126.55 By MS/MS By matching 4 2 1.0729 1.0136 19.212 6 Median 1.0691 1.0136 21.601 4 0 Median 1.1771 1.0161 20.609 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107170000 46242000 60928000 105110000 45279000 59830000 2061100 963710 1097400 0 0 0 0 0 0 0 0 0 0 0 0 34651 1522 36426 182149;182150;182151;182152;182153;182154 184391;184392;184393;184394;184395 184391 5 TVQTAVFLYSLYK QGTDTILADEMGLGKTVQTAVFLYSLYKEG GKTVQTAVFLYSLYKEGHSKGPFLVSAPLS K T V Y K E 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 2 0 2 2 0 0 13 0 1531.8286 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 758 770 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0009775 61.353 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 1 1 1.2963 1.2859 12.21 9 Median 1.3355 1.2859 NaN 1 0 Median 1.8991 1.6531 NaN 1 0 Median 1.1764 1.2744 1.6154 2 0 Median 1.3425 1.2214 7.2363 3 0 Median 1.2842 1.3561 NaN 1 0 Median 1.2058 1.0481 NaN 1 0 Median 24204000 11007000 13197000 507160 220720 286440 989810 362550 627260 18965000 8839200 10126000 1093900 469190 624760 2548500 1067200 1481400 99476 48648 50828 34652 246 36427 182155;182156;182157;182158;182159;182160;182161;182162;182163 184396;184397;184398;184399;184400;184401 184396 6 TVQVSATEDGNVTK ______________________________ KTVQVSATEDGNVTKDSNVVLEIPAATTIA K T V T K D 1 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 3 0 0 3 0 0 14 0 1447.7155 H7C147;C9JSR4;O60443 H7C147 15 28 DFNA5 Non-syndromic hearing impairment protein 5 yes no 2 0.0019258 45.879 By MS/MS 1 0.91099 0.88868 NaN 1 Median 0.91099 0.88868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1575400 753090 822320 1575400 753090 822320 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34653 722 36428 182164 184402 184402 1 TVQVVPHITDAIQEWVMR QYVINKERKGDYLGKTVQVVPHITDAIQEW VVPHITDAIQEWVMRQALIPVDEDGLEPQV K T V M R Q 1 1 0 1 0 2 1 0 1 2 0 0 1 0 1 0 2 1 0 4 0 0 18 0 2121.1041 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8 P17812 110 127 CTPS1 CTP synthase 1 yes no 2;3 1.0995E-06 78.021 By MS/MS By MS/MS By matching 2 2 1 1.0228 0.90509 25.016 5 Median 1.0756 1.034 4.8676 2 0 Median 1.0297 0.89141 2.1545 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71795 0.56458 NaN 1 0 Median 39527000 17783000 21744000 22634000 10361000 12273000 16759000 7350000 9408600 0 0 0 0 0 0 0 0 0 134510 71988 62519 34654 2046 36429 182165;182166;182167;182168;182169 184403;184404;184405;184406;184407;184408;184409;184410;184411 184411 9 TVSALGLDPSGAR KIPDSHEITLKHGTKTVSALGLDPSGARLV TKTVSALGLDPSGARLVTGGYDYDVKFWDF K T V A R L 2 1 0 1 0 0 0 2 0 0 2 0 0 0 1 2 1 0 0 1 0 0 13 0 1242.6568 Q9NW82;D6RIW8 Q9NW82 184 196 WDR70 WD repeat-containing protein 70 yes no 2 1.4639E-05 95.573 By MS/MS 1 0.79517 0.81104 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79517 0.81104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9878100 5031100 4847000 0 0 0 0 0 0 9878100 5031100 4847000 0 0 0 0 0 0 0 0 0 34655 4147 36430 182170 184412 184412 1 TVSDLIDQK VIPEVIKNFIQYFHKTVSDLIDQKVYELQA IQYFHKTVSDLIDQKVYELQASRVSSDVID K T V Q K V 0 0 0 2 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 1017.5342 B0QY89;Q9Y262;C9JHP4;C9K0Q7;H7C3A0 B0QY89 105 113 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00093589 89.698 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1897 1.0481 14.015 4 Median 1.1621 1.0807 NaN 1 0 Median 1.2179 1.0166 NaN 1 0 Median 1.3088 1.321 NaN 1 0 Median 1.1199 0.95635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62836000 28031000 34805000 34972000 15627000 19345000 21781000 9671200 12110000 4414400 1919400 2495000 1668600 813230 855350 0 0 0 0 0 0 34656 554 36431 182171;182172;182173;182174 184413;184414;184415;184416;184417;184418;184419 184413 7 TVSEWISQMATLPQASNLATR VLIKAALPLTTSDTKTVSEWISQMATLPQA SQMATLPQASNLATRILLLTLLFEELKLPC K T V T R I 3 1 1 0 0 2 1 0 0 1 2 0 1 0 1 3 3 1 0 1 0 0 21 0 2303.158 Q7Z6Z7 Q7Z6Z7 1509 1529 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.058461 7.712 By MS/MS 2 0.75876 0.75474 43.165 2 Median 0.75876 0.75474 43.165 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1286900 761270 525630 1286900 761270 525630 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34657 3253 36432 182175;182176 184420;184421 184420 2 TVSGLESLK T V L K 0 0 0 0 0 0 1 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 9 0 932.51786 REV__Q15149 yes no 2 0.030052 49.57 By MS/MS 1 2.0015 1.7519 NaN 1 Median NaN NaN NaN 0 0 Median 2.0015 1.7519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6315200 2390000 3925200 0 0 0 6315200 2390000 3925200 0 0 0 0 0 0 0 0 0 0 0 0 + 34658 4540 36433 182177 184422 184422 1 TVSHEAEVHAESLQQK QEQINKQGLEIESLKTVSHEAEVHAESLQQ VSHEAEVHAESLQQKLESSQLQIAGLEHLR K T V Q K L 2 0 0 0 0 2 3 0 2 0 1 1 0 0 0 2 1 0 0 2 0 0 16 0 1791.8751 Q14789;E7EU81 Q14789 1358 1373 GOLGB1 Golgin subfamily B member 1 yes no 3;4 1.6512E-20 188.39 By MS/MS By MS/MS By matching 4 2 2 1.1409 1.1017 28.58 8 Median 1.0342 1.0042 42.248 4 1 Median 1.3184 1.171 9.3024 2 0 Median 1.1044 1.2199 13.722 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51346000 22789000 28557000 26818000 12075000 14743000 22744000 9875000 12869000 1783300 838210 945070 0 0 0 0 0 0 0 0 0 34659 2900 36434 182178;182179;182180;182181;182182;182183;182184;182185 184423;184424;184425;184426;184427 184427 5 TVSLGAGAK FKVDNDENEHQLSLRTVSLGAGAKDELHIV HQLSLRTVSLGAGAKDELHIVEAEAMNYEG R T V A K D 2 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 9 0 802.45487 P06748;E5RGW4 P06748 46 54 NPM1 Nucleophosmin yes no 2 0.00089092 92.187 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 3 1 2 1.26 1.1358 7.9573 15 Median 1.2034 1.178 6.3395 3 0 Median 1.3173 1.1358 7.9778 3 0 Median 1.2038 1.2147 11.299 3 0 Median 1.3027 1.0996 4.672 3 0 Median 1.1525 1.1411 NaN 1 0 Median 1.234 1.016 7.793 2 0 Median 46957000 21402000 25555000 2179900 1005000 1174900 9299800 4085000 5214800 24516000 11453000 13063000 6834800 2957800 3877000 2490400 1162200 1328200 1636100 739000 897130 34660 1877 36435 182186;182187;182188;182189;182190;182191;182192;182193;182194;182195;182196;182197;182198;182199;182200 184428;184429;184430;184431;184432;184433;184434;184435;184436;184437;184438;184439;184440;184441;184442;184443;184444;184445;184446;184447;184448;184449;184450;184451;184452;184453;184454;184455 184433 28 TVSLGAGAKDELHIVEAEAMNYEGSPIK FKVDNDENEHQLSLRTVSLGAGAKDELHIV IVEAEAMNYEGSPIKVTLATLKMSVQPTVS R T V I K V 4 0 1 1 0 0 4 3 1 2 2 2 1 0 1 2 1 0 1 2 0 0 28 1 2928.4539 P06748 P06748 46 73 NPM1 Nucleophosmin yes yes 3;4 1.7192E-40 102.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 4 5 6 0.95968 0.90269 14.037 26 Median NaN NaN NaN 0 0 Median 1.0108 0.91318 17.467 7 0 Median 0.84355 0.87615 1.7721 5 0 Median 1.0994 0.979 3.1916 4 0 Median 0.87063 0.95419 4.8218 4 0 Median 0.98638 0.83731 18.504 6 0 Median 349710000 165660000 184050000 0 0 0 18345000 8085500 10260000 250530000 121210000 129320000 17146000 7822800 9322800 32649000 14761000 17888000 31036000 13772000 17264000 34661 1877 36436;36437 182201;182202;182203;182204;182205;182206;182207;182208;182209;182210;182211;182212;182213;182214;182215;182216;182217;182218;182219;182220;182221;182222;182223;182224;182225;182226;182227 184456;184457;184458;184459;184460;184461;184462;184463;184464;184465;184466;184467;184468;184469;184470;184471;184472;184473;184474;184475;184476;184477;184478;184479;184480;184481 184466 643 25 TVSLLDENNVSSYLSK SRSQGCSEQVLTVLKTVSLLDENNVSSYLS VSLLDENNVSSYLSKNILAFRDQNILLGTT K T V S K N 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 4 1 0 1 2 0 0 16 0 1767.8891 P78527 P78527 3303 3318 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.8538E-27 201.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 3 2 1.0165 1.0012 20.571 15 Median 0.96932 0.97442 14.353 3 0 Plateau 1.1529 1.0337 17.234 2 0 Median 0.93722 1.0012 33.194 3 0 Median 1.4175 1.3327 2.7937 2 0 Median 0.9721 0.99475 8.0804 3 0 Median 1.4513 1.2438 2.6129 2 0 Median 345520000 168680000 176840000 138540000 68836000 69704000 34119000 14192000 19927000 141910000 70663000 71244000 4798600 1953300 2845300 25286000 12656000 12630000 868680 379380 489290 34662 2647 36438 182228;182229;182230;182231;182232;182233;182234;182235;182236;182237;182238;182239;182240;182241;182242 184482;184483;184484;184485;184486;184487;184488;184489;184490;184491;184492;184493;184494;184495;184496;184497;184498;184499;184500;184501;184502;184503 184490 22 TVSPALISR AVVSTRHEMLPEFYKTVSPALISRFKEREE LPEFYKTVSPALISRFKEREENVKADVFHA K T V S R F 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 2 1 0 0 1 0 0 9 0 942.54983 Q86VP6;A0A0C4DGH5;H0YH27 Q86VP6 374 382 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.00073228 101.54 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.8805 0.89887 5.9701 4 Linear 0.83989 0.8085 NaN 1 0 Median 1.0721 0.88031 NaN 1 0 Median 0.80023 0.87972 NaN 1 0 Median 0.92309 0.78288 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110730000 55074000 55660000 18205000 9445500 8759700 66541000 32497000 34044000 18390000 9558300 8831600 7598100 3572800 4025300 0 0 0 0 0 0 34663 3288 36439 182243;182244;182245;182246 184504;184505;184506;184507;184508;184509;184510;184511 184504 8 TVSPDRLELEAAQK ______________________________ KTVSPDRLELEAAQKFLERAAVENLPTFLV K T V Q K F 2 1 0 1 0 1 2 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 14 1 1555.8206 Q14974;J3QR48 Q14974 10 23 KPNB1 Importin subunit beta-1 yes no 2;3 1.0661E-15 185.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 2 8 4 6 9 1 0.9938 18.452 36 Median 0.94831 0.9646 4.2578 7 0 Median 1.1323 1.1229 5.4041 2 0 Median 0.8783 0.97855 12.402 8 1 Median 1.0771 0.97403 8.235 4 0 Median 1.0524 1.157 19.9 6 0 Median 1.1446 0.99252 25.015 9 1 Median 484780000 238930000 245850000 121910000 61057000 60849000 28337000 12892000 15445000 245780000 125080000 120700000 35211000 16023000 19188000 37641000 17387000 20254000 15906000 6490900 9414600 34664 2904 36440 182247;182248;182249;182250;182251;182252;182253;182254;182255;182256;182257;182258;182259;182260;182261;182262;182263;182264;182265;182266;182267;182268;182269;182270;182271;182272;182273;182274;182275;182276;182277;182278;182279;182280;182281;182282 184512;184513;184514;184515;184516;184517;184518;184519;184520;184521;184522;184523;184524;184525;184526;184527;184528;184529;184530;184531;184532;184533;184534;184535;184536;184537;184538;184539;184540;184541;184542;184543;184544;184545;184546;184547 184521 36 TVSQIISLQTLK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY GIKTVSQIISLQTLKKEYKSYEAKLRLLSS K T V L K K 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 2 2 0 0 1 0 0 12 0 1329.7868 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 125 136 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 5.1286E-06 115.23 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 5 2 1.1745 1.15 26.901 15 Median 2.812 2.712 NaN 1 0 Median 1.1706 0.98438 26.107 2 0 Median 1.0901 1.1038 5.8019 2 0 Median 1.3657 1.2336 18.437 3 0 Median 1.152 1.1314 6.4745 5 1 Median 1.2597 1.0491 9.2263 2 0 Median 88566000 40015000 48551000 2402900 495490 1907400 11258000 4477900 6780300 9132300 4120900 5011400 801260 326390 474870 58502000 27654000 30848000 6469100 2940100 3529000 34665 1716 36441 182283;182284;182285;182286;182287;182288;182289;182290;182291;182292;182293;182294;182295;182296;182297 184548;184549;184550;184551;184552;184553;184554;184555;184556;184557;184558;184559;184560 184554 13 TVSQIISLQTLKK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY IKTVSQIISLQTLKKEYKSYEAKLRLLSSF K T V K K E 0 0 0 0 0 2 0 0 0 2 2 2 0 0 0 2 2 0 0 1 0 0 13 1 1457.8817 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 125 137 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2;3 9.3849E-07 125.74 By matching By MS/MS By MS/MS By matching 2 1 10 3 1.222 1.2746 10.776 16 Median NaN NaN NaN 0 0 Median 1.3149 1.2404 23.451 2 0 Median 1.0749 1.127 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.222 1.3212 6.4008 10 0 Median 1.2616 1.1258 4.6671 3 0 Median 235570000 102860000 132710000 0 0 0 1600700 620380 980330 3532900 1741000 1791900 0 0 0 225720000 98374000 127340000 4718300 2119500 2598900 34666 1716 36442 182298;182299;182300;182301;182302;182303;182304;182305;182306;182307;182308;182309;182310;182311;182312;182313 184561;184562;184563;184564;184565;184566;184567;184568;184569;184570;184571;184572 184563 11 TVSSHEVFLQR MKQELEAEYLAVFKKTVSSHEVFLQRLSSH VFKKTVSSHEVFLQRLSSHPVLSKDRNFHV K T V Q R L 0 1 0 0 0 1 1 0 1 0 1 0 0 1 0 2 1 0 0 2 0 0 11 0 1301.6728 Q9Y5X3;Q5QPE5;Q5QPE4 Q9Y5X3 139 149 SNX5 Sorting nexin-5 yes no 2;3 4.1196E-05 83 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.1177 1.0751 22.277 7 Median 0.99839 0.97426 15.768 2 0 Median 1.9805 1.6227 32.011 3 0 Plateau 1.0923 1.0963 NaN 1 0 Median 1.1774 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37294000 16444000 20850000 11645000 5026200 6619000 13799000 5081500 8717300 4161400 2017600 2143800 7688500 4318700 3369700 0 0 0 0 0 0 34667 4471 36443 182314;182315;182316;182317;182318;182319;182320 184573;184574;184575;184576 184576 4 TVSSSVIEQLFFVR PSRFGKLLLRLPSLRTVSSSVIEQLFFVRL RTVSSSVIEQLFFVRLVGKTPIETLIRDML R T V V R L 0 1 0 0 0 1 1 0 0 1 1 0 0 2 0 3 1 0 0 3 0 0 14 0 1610.8668 P10589;F1DAL7;F1DAL9 P10589 379 392 NR2F1 COUP transcription factor 1 no no 2 6.8598E-06 154.35 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.89483 0.907 22.682 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83431 0.84514 9.9909 2 1 Median 1.3692 1.1954 NaN 1 0 Median 0.89483 0.89983 NaN 1 0 Median 1.5432 1.3646 NaN 1 0 Median 50600000 26999000 23601000 0 0 0 0 0 0 49215000 26382000 22832000 633720 246330 387400 613750 320380 293360 137940 49672 88270 34668 1941 36444 182321;182322;182323;182324;182325 184577;184578;184579;184580 184578 4 TVSTLHHVLQR WTHKHPNNLKVACEKTVSTLHHVLQRTIQC ACEKTVSTLHHVLQRTIQCAKAQAGEGVRP K T V Q R T 0 1 0 0 0 1 0 0 2 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1289.7204 O00764;F2Z2Y4 O00764 259 269 PDXK Pyridoxal kinase yes no 2;3 5.1811E-05 95.502 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 1 1 1.3694 1.2088 15.137 6 Median 1.391 1.2997 13.098 2 0 Median 1.3694 1.1388 4.2499 2 2 Median 1.2864 1.2333 NaN 1 1 Median 1.986 1.6565 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68784000 28173000 40611000 33953000 14023000 19930000 31514000 12746000 18768000 1340100 594190 745920 1977100 809880 1167200 0 0 0 0 0 0 34669 1478 36445 182326;182327;182328;182329;182330;182331;182332;182333 184581;184582;184583;184584;184585;184586;184587;184588;184589;184590 184582 10 TVSVGLTLLR VQIGKGPTNNTCVVRTVSVGLTLLRVWDAE TCVVRTVSVGLTLLRVWDAEHPGLSDFMPL R T V L R V 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 2 0 0 2 0 0 10 0 1057.6495 Q8TEM1 Q8TEM1 1448 1457 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0070645 48.283 By matching By MS/MS By matching 2 1 1 1.1936 1.0782 18.323 4 Median NaN NaN NaN 0 0 Median 1.1936 1.0062 3.8302 2 0 Median 1.0203 1.1244 NaN 1 0 Median 1.7061 1.4793 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12315000 5533300 6782200 0 0 0 7111600 3102200 4009400 5051500 2361700 2689800 152380 69352 83025 0 0 0 0 0 0 34670 3477 36446 182334;182335;182336;182337 184591 184591 1 TVSVSEAIKK AEKAITGFDDPFSGKTVSVSEAIKKNLIDR PFSGKTVSVSEAIKKNLIDRETGMRLLEAQ K T V K K N 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 1 0 0 2 0 0 10 1 1060.6128 P15924 P15924 2104 2113 DSP Desmoplakin yes yes 2 0.0036989 68.224 By matching By matching By matching By MS/MS By MS/MS 1 1 1 1 2 0.96287 1.0361 21.563 6 Median 0.94501 1.0205 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83285 0.95481 NaN 1 0 Median 1.3883 1.4104 NaN 1 0 Median 0.98107 1.0519 NaN 1 1 Median 1.1589 1.04 37.329 2 0 Median 14186000 6895400 7290600 1039200 512950 526280 0 0 0 1154100 703980 450080 353450 159650 193810 5003800 2615800 2388000 6635400 2903000 3732400 34671 2021 36447 182338;182339;182340;182341;182342;182343 184592;184593;184594;184595 184592 4 TVSYNILADTYAQTEFSR RHLYTKKVTEDALIRTVSYNILADTYAQTE YNILADTYAQTEFSRTVLYPYCAPYALELD R T V S R T 2 1 1 1 0 1 1 0 0 1 1 0 0 1 0 2 3 0 2 1 0 0 18 0 2077.9956 F6T1Q0;Q6L8Q7 F6T1Q0 297 314 PDE12 2,5-phosphodiesterase 12 yes no 2 0.00031234 40.577 By MS/MS 1 1.0018 1.0068 NaN 1 Median 1.0018 1.0068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2359200 1138200 1221000 2359200 1138200 1221000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34672 1050 36448 182344 184596;184597 184596 2 TVTAAGAENIQQK QATQGNISSDRGKKRTVTAAGAENIQQKTD KRTVTAAGAENIQQKTDEKVDESGPPAPSK R T V Q K T 3 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 13 0 1329.6888 Q29RF7 Q29RF7 1240 1252 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 5.5866E-05 87.298 By matching By MS/MS By MS/MS 1 1 2 1.1953 1.0791 5.3911 4 Median NaN NaN NaN 0 0 Median 1.1428 0.99847 NaN 1 0 Median 0.99018 1.0705 NaN 1 0 Median 1.2651 1.1121 3.1204 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11199000 5407800 5791100 0 0 0 2651900 1312200 1339800 5587900 2818200 2769700 2959100 1277500 1681700 0 0 0 0 0 0 34673 3003 36449 182345;182346;182347;182348 184598;184599;184600;184601;184602 184602 5 TVTAMDVVYALK VIRDAVTYTEHAKRKTVTAMDVVYALKRQG KRKTVTAMDVVYALKRQGRTLYGFGG____ K T V L K R 2 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 12 0 1309.6952 P62805 P62805 81 92 HIST1H4A Histone H4 yes yes 2 3.6707E-06 127.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 9 12 17 21 1.2457 1.0467 18.348 68 Median 1.139 1.0174 22.256 4 0 Linear 1.4511 1.2755 5.3238 5 0 Median 0.86887 0.88311 9.8488 9 0 Median 1.3858 1.7923 14.455 12 0 Linear 0.92206 1.15 7.5387 17 3 Linear 1.3252 1.1051 13.41 21 0 Median 11669000000 5135200000 6534000000 40910000 19580000 21330000 12919000 4978800 7939800 70157000 35639000 34518000 7334900 2659600 4675200 3139100000 1595200000 1543900000 8398800000 3477200000 4921600000 34674 2597 36450;36451 182349;182350;182351;182352;182353;182354;182355;182356;182357;182358;182359;182360;182361;182362;182363;182364;182365;182366;182367;182368;182369;182370;182371;182372;182373;182374;182375;182376;182377;182378;182379;182380;182381;182382;182383;182384;182385;182386;182387;182388;182389;182390;182391;182392;182393;182394;182395;182396;182397;182398;182399;182400;182401;182402;182403;182404;182405;182406;182407;182408;182409;182410;182411;182412;182413;182414;182415;182416 184603;184604;184605;184606;184607;184608;184609;184610;184611;184612;184613;184614;184615;184616;184617;184618;184619;184620;184621;184622;184623;184624;184625;184626;184627;184628;184629;184630;184631;184632;184633;184634;184635;184636;184637;184638;184639;184640;184641;184642;184643;184644;184645;184646;184647;184648;184649;184650;184651;184652;184653;184654;184655;184656;184657;184658;184659;184660;184661;184662;184663;184664;184665;184666;184667;184668;184669;184670;184671;184672;184673;184674;184675;184676;184677;184678;184679 184668 1264 77 TVTAMDVVYALKR VIRDAVTYTEHAKRKTVTAMDVVYALKRQG RKTVTAMDVVYALKRQGRTLYGFGG_____ K T V K R Q 2 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 13 1 1465.7963 P62805 P62805 81 93 HIST1H4A Histone H4 yes yes 2;3 2.6584E-53 234.2 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 9 6 8 1 42 22 1.0244 1.1099 16.179 84 Median 1.1223 1.1023 18.219 9 0 Median 1.7539 1.5485 11.1 6 2 Median 0.96741 1.0007 10.184 7 0 Median 1.8069 1.5995 NaN 1 0 Median 0.98126 1.0876 8.9242 40 1 Median 1.4203 1.1531 14.296 21 2 Median 14337000000 6415400000 7921700000 124350000 56978000 67373000 31608000 11514000 20094000 155680000 75373000 80305000 111870 34341 77530 7421100000 3637300000 3783800000 6604200000 2634200000 3970000000 34675 2597 36452;36453 182417;182418;182419;182420;182421;182422;182423;182424;182425;182426;182427;182428;182429;182430;182431;182432;182433;182434;182435;182436;182437;182438;182439;182440;182441;182442;182443;182444;182445;182446;182447;182448;182449;182450;182451;182452;182453;182454;182455;182456;182457;182458;182459;182460;182461;182462;182463;182464;182465;182466;182467;182468;182469;182470;182471;182472;182473;182474;182475;182476;182477;182478;182479;182480;182481;182482;182483;182484;182485;182486;182487;182488;182489;182490;182491;182492;182493;182494;182495;182496;182497;182498;182499;182500;182501;182502;182503;182504 184680;184681;184682;184683;184684;184685;184686;184687;184688;184689;184690;184691;184692;184693;184694;184695;184696;184697;184698;184699;184700;184701;184702;184703;184704;184705;184706;184707;184708;184709;184710;184711;184712;184713;184714;184715;184716;184717;184718;184719;184720;184721;184722;184723;184724;184725;184726;184727;184728;184729;184730;184731;184732;184733;184734;184735;184736;184737;184738;184739;184740;184741;184742;184743;184744;184745;184746;184747;184748;184749;184750;184751;184752;184753;184754;184755;184756;184757;184758;184759;184760;184761;184762;184763;184764;184765;184766;184767;184768;184769;184770;184771;184772;184773;184774;184775;184776;184777;184778;184779;184780;184781;184782;184783;184784;184785;184786;184787;184788;184789;184790;184791;184792;184793;184794;184795;184796;184797;184798;184799;184800;184801;184802;184803;184804;184805;184806;184807;184808;184809;184810;184811;184812;184813;184814;184815;184816;184817;184818;184819;184820;184821;184822;184823;184824;184825;184826;184827;184828;184829;184830;184831;184832 184715 1264 153 TVTATFGYPFR TEIQVNCPPAVTENKTVTATFGYPFRLNEA TENKTVTATFGYPFRLNEASFQPPPGVNIC K T V F R L 1 1 0 0 0 0 0 1 0 0 0 0 0 2 1 0 3 0 1 1 0 0 11 0 1258.6346 Q16563;A0A0U1RQT9;C9JYN0 Q16563 73 83 SYPL1 Synaptophysin-like protein 1 yes no 2 0.00013669 99.802 By MS/MS By matching By matching 5 3 1 1.6463 1.5414 58.369 9 Median 1.8261 1.7227 79.342 5 0 Median 1.5345 1.2866 31.848 3 0 Median 1.4764 1.4167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48413000 15383000 33030000 42550000 13362000 29188000 4990200 1725500 3264700 873090 295560 577530 0 0 0 0 0 0 0 0 0 34676 2989 36454 182505;182506;182507;182508;182509;182510;182511;182512;182513 184833;184834;184835;184836;184837;184838;184839 184834 7 TVTDMLMTICAR MLDGTVKTIMVDDSKTVTDMLMTICARIGI DSKTVTDMLMTICARIGITNHDEYSLVREL K T V A R I 1 1 0 1 1 0 0 0 0 1 1 0 2 0 0 0 3 0 0 1 0 0 12 0 1410.6669 Q9Y490 Q9Y490 107 118 TLN1 Talin-1 yes yes 2 0.013929 35.511 By MS/MS 2 1.1506 1 7.5224 2 Median NaN NaN NaN 0 0 Median 1.1506 1 7.5224 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2624200 1278200 1346000 0 0 0 2624200 1278200 1346000 0 0 0 0 0 0 0 0 0 0 0 0 34677 4441 36455 182514;182515 184840 184840 1 TVTEIDEKEYISLR VSKIAKYPHVEDYRRTVTEIDEKEYISLRL RTVTEIDEKEYISLRLIISELRNQYVTLHD R T V L R L 0 1 0 1 0 0 3 0 0 2 1 1 0 0 0 1 2 0 1 1 0 0 14 1 1694.8727 K9J957;P61289;K7ESG5;A0A087WTV2;B3KQ25 K9J957 182 195 PSME3 Proteasome activator complex subunit 3 yes no 3 4.9035E-05 79.646 By MS/MS By MS/MS By MS/MS 1 1 2 1.1376 1.1487 44.759 4 Median 0.70789 0.71086 NaN 1 0 Median 0.95144 0.89155 NaN 1 1 Median 1.5326 1.6677 16.881 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22594000 9572300 13022000 11429000 5303500 6125100 1254000 631600 622440 9911800 3637200 6274600 0 0 0 0 0 0 0 0 0 34678 1403 36456 182516;182517;182518;182519 184841;184842;184843;184844 184842 4 TVTELVTK FDPKFAFKEVEVQAKTVTELVTKKKPKAEG EVEVQAKTVTELVTKKKPKAEGYAEGDLTL K T V T K K 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 3 0 0 2 0 0 8 0 889.51205 Q8IY81 Q8IY81 226 233 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.012958 53.968 By MS/MS By MS/MS 2 2 1.182 1.0958 7.1751 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0548 1.0958 4.7981 2 0 Median 1.3333 1.1235 11.189 2 0 Median 19074000 8851600 10222000 0 0 0 0 0 0 0 0 0 0 0 0 13137000 6186600 6950300 5937000 2665000 3272000 34679 3338 36457 182520;182521;182522;182523 184845;184846;184847 184845 3 TVTEYKIDEDGKK APLPPPKEVINGNIKTVTEYKIDEDGKKFK IKTVTEYKIDEDGKKFKIVRTFRIETRKAS K T V K K F 0 0 0 2 0 0 2 1 0 1 0 3 0 0 0 0 2 0 1 1 0 0 13 2 1524.7672 O75821;K7ER90;K7EL20;K7ENA8;K7EL60 O75821 66 78 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2;3 0.0066312 64.65 By MS/MS By MS/MS By matching By matching 4 3 1 1 1.0191 1.045 6.9056 9 Median 1.1178 1.1402 8.7942 4 0 Linear 1.0861 1.0637 1.5354 3 1 Median 0.94564 1.0444 NaN 1 0 Median 0.9842 0.92643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12402000 5888600 6513500 8263000 3875900 4387100 2502800 1227800 1275100 762920 377030 385890 873320 407860 465460 0 0 0 0 0 0 34680 1697 36458 182524;182525;182526;182527;182528;182529;182530;182531;182532 184848;184849;184850;184851 184850 4 TVTIPTQPYQDIVTALK DGVFKAPAPPSKVIKTVTIPTQPYQDIVTA TIPTQPYQDIVTALKCRREDKELYTVVQHV K T V L K C 1 0 0 1 0 2 0 0 0 2 1 1 0 0 2 0 4 0 1 2 0 0 17 0 1887.0353 Q7Z5K2 Q7Z5K2 608 624 WAPAL Wings apart-like protein homolog yes yes 2 0.00081404 38.634 By MS/MS 3 0.61249 0.64068 5.0851 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61249 0.64068 5.0851 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4423100 2696500 1726600 0 0 0 0 0 0 4423100 2696500 1726600 0 0 0 0 0 0 0 0 0 34681 3249 36459 182533;182534;182535 184852;184853;184854 184853 3 TVTISQVSDNK SLAHRGVDASKKTSKTVTISQVSDNKASLP KTSKTVTISQVSDNKASLPPKPGTMAAGGG K T V N K A 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 2 2 0 0 2 0 0 11 0 1190.6143 Q5JPT2;Q96B97 Q5JPT2 516 526 SH3KBP1 SH3 domain-containing kinase-binding protein 1 yes no 2 0.0014 59.245 By MS/MS By MS/MS 1 1 1.0491 0.91172 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0491 0.91172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1284700 657610 627060 0 0 0 0 0 0 0 0 0 1284700 657610 627060 0 0 0 0 0 0 34682 3048 36460 182536;182537 184855;184856;184857 184857 3 TVTITKEDESTEK QARKGYKKIAGMSQKTVTITKEDESTEKLS QKTVTITKEDESTEKLSSVCMGQEDNMTSV K T V E K L 0 0 0 1 0 0 3 0 0 1 0 2 0 0 0 1 4 0 0 1 0 0 13 1 1479.7304 Q9NS91;H7C3I2 Q9NS91 371 383 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 2;3 0.00018264 70.332 By MS/MS By matching 2 1 1.0309 1.1633 27.381 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0889 1.2307 7.9669 2 0 Median 0.83795 0.77372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7562100 3444900 4117100 0 0 0 0 0 0 7306000 3314900 3991200 256030 130060 125960 0 0 0 0 0 0 34683 4099 36461 182538;182539;182540 184858;184859;184860 184859 3 TVTLGGDVFDPHGTLSGGAR DNAKKVAFDKRIMTRTVTLGGDVFDPHGTL GDVFDPHGTLSGGARSQAASILTKFQELKD R T V A R S 1 1 0 2 0 0 0 5 1 0 2 0 0 1 1 1 3 0 0 2 0 0 20 0 1955.9701 O95347 O95347 649 668 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 7.8253E-09 73.928 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 0.99571 0.92788 8.2251 7 Median 0.98009 0.94559 2.6748 2 0 Median 0.95802 0.8064 NaN 1 0 Median 0.80123 0.88086 NaN 1 0 Median 1.1113 0.94335 NaN 1 0 Median 0.99571 1.0544 NaN 1 0 Median 1.0987 0.91372 NaN 1 0 Median 52227000 27260000 24967000 20429000 9781000 10648000 5974600 3186500 2788200 16947000 10037000 6909800 5775900 2797700 2978200 2788400 1284000 1504400 311840 174190 137650 34684 1766 36462 182541;182542;182543;182544;182545;182546;182547 184861;184862;184863;184864;184865;184866 184862 6 TVTLGIWDTAGSER IGAAFVAKVMSVGDRTVTLGIWDTAGSERY RTVTLGIWDTAGSERYEAMSRIYYRGAKAA R T V E R Y 1 1 0 1 0 0 1 2 0 1 1 0 0 0 0 1 3 1 0 1 0 0 14 0 1504.7522 Q969Q5;F8W8H5 Q969Q5 56 69 RAB24 Ras-related protein Rab-24 yes no 2 6.4075E-08 116.77 By MS/MS 2 1.0518 0.99572 8.7316 2 Median 1.0518 0.99572 8.7316 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15745000 7316500 8428600 15745000 7316500 8428600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34685 3584 36463 182548;182549 184867;184868 184867 2 TVTLPENEDELESTNR APGVRVSGDDVIIGKTVTLPENEDELESTN VTLPENEDELESTNRRYTKRDCSTFLRTSE K T V N R R 0 1 2 1 0 0 4 0 0 0 2 0 0 0 1 1 3 0 0 1 0 0 16 0 1845.8592 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 863 878 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 2.7209E-10 107.85 By matching By matching By MS/MS 1 1 1 0.94221 0.84683 6.1103 3 Median 0.94221 0.91921 NaN 1 0 Median 0.95832 0.84683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78612 0.8157 NaN 1 0 Median NaN NaN NaN 0 0 Median 9507500 4743800 4763700 2944400 1331700 1612700 521240 234100 287140 0 0 0 0 0 0 6041900 3178000 2863800 0 0 0 34686 671 36464 182550;182551;182552 184869 184869 1 TVTLPENEDELESTNRR APGVRVSGDDVIIGKTVTLPENEDELESTN TLPENEDELESTNRRYTKRDCSTFLRTSET K T V R R Y 0 2 2 1 0 0 4 0 0 0 2 0 0 0 1 1 3 0 0 1 0 0 17 1 2001.9603 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 863 879 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 6.2406E-19 123.38 By MS/MS By MS/MS 1 1 0.82952 0.95357 42.551 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0593 1.2883 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.6496 0.7058 NaN 1 1 Median NaN NaN NaN 0 0 Median 24706000 12097000 12609000 0 0 0 0 0 0 15931000 7051800 8879600 0 0 0 8774100 5044900 3729200 0 0 0 34687 671 36465 182553;182554 184870;184871 184870 2 TVTLVEAIK RPAPYIIFGPPGTGKTVTLVEAIKQVVKHL PPGTGKTVTLVEAIKQVVKHLPKAHILACA K T V I K Q 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 9 0 972.58555 Q9HCE1;Q5JR04 Q9HCE1 531 539 MOV10 Putative helicase MOV-10 yes no 2 0.028308 50.607 By MS/MS 1 1.1926 1.1807 NaN 1 Median 1.1926 1.1807 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2900900 1291000 1609900 2900900 1291000 1609900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34688 4029 36466 182555 184872 184872 1 TVTNAVVTVPAYFNDSQR VLTKMKEIAEAYLGKTVTNAVVTVPAYFND NAVVTVPAYFNDSQRQATKDAGTIAGLNVL K T V Q R Q 2 1 2 1 0 1 0 0 0 0 0 0 0 1 1 1 3 0 1 4 0 0 18 0 1980.9905 P11142;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 138 155 HSPA8 Heat shock cognate 71 kDa protein yes no 2;3 5.1326E-52 218.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 8 4 4 9 3 0.94941 0.86372 39.06 39 Median 2.5934 2.6105 60.299 11 3 Linear 1.033 0.89106 42.359 8 0 Median 0.86947 0.88473 16.643 4 0 Median 1.0339 0.86854 15.472 4 0 Median 0.89861 0.90314 12.086 9 1 Median 0.92775 0.81786 8.8411 3 0 Median 832570000 420220000 412350000 361940000 184430000 177510000 138050000 68390000 69663000 234060000 117910000 116150000 23111000 11045000 12066000 74352000 37917000 36435000 1046200 521200 525000 34689 1950 36467 182556;182557;182558;182559;182560;182561;182562;182563;182564;182565;182566;182567;182568;182569;182570;182571;182572;182573;182574;182575;182576;182577;182578;182579;182580;182581;182582;182583;182584;182585;182586;182587;182588;182589;182590;182591;182592;182593;182594 184873;184874;184875;184876;184877;184878;184879;184880;184881;184882;184883;184884;184885;184886;184887;184888;184889;184890;184891;184892;184893;184894;184895;184896;184897;184898;184899;184900;184901;184902;184903;184904;184905;184906;184907;184908;184909;184910;184911;184912;184913;184914;184915;184916;184917;184918;184919;184920;184921;184922;184923;184924;184925;184926;184927;184928;184929;184930;184931;184932;184933;184934;184935;184936;184937;184938;184939;184940;184941;184942;184943 184887 71 TVTQLVAEDGSR EMKLKRRRQRPNLPRTVTQLVAEDGSRVYV LPRTVTQLVAEDGSRVYVVGTAHFSDDSKR R T V S R V 1 1 0 1 0 1 1 1 0 0 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1274.6466 J3KPT4;Q9H4I3 J3KPT4 63 74 TRABD TraB domain-containing protein yes no 2 0.00023666 83 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34690 1311 36468 182595 184944 184944 1 TVTSATIVYHLAR QRPLSLIQGPPGTGKTVTSATIVYHLARQG GKTVTSATIVYHLARQGNGPVLVCAPSNIA K T V A R Q 2 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 3 0 1 2 0 0 13 0 1430.7882 Q92900 Q92900 510 522 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 8.0804E-06 127.76 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 0.99564 0.96602 19.378 8 Median 1.0389 1.0008 12.278 2 0 Median 0.96245 0.81392 8.9302 2 0 Median 1.2434 1.3674 NaN 1 0 Median 1.0472 0.89056 20.527 2 0 Median 0.96206 1.017 NaN 1 0 Median NaN NaN NaN 0 0 Median 52213000 24384000 27829000 24791000 10268000 14522000 9794800 5460300 4334500 7656300 3714600 3941700 6716900 3185800 3531100 3254400 1755000 1499400 0 0 0 34691 3564 36469 182596;182597;182598;182599;182600;182601;182602;182603 184945;184946;184947;184948;184949;184950;184951;184952;184953 184953 9 TVTVTRPTGVSFK VSTMVTTSTTTTVAKTVTVTRPTGVSFKKD AKTVTVTRPTGVSFKKDVPPSINTTNIDTL K T V F K K 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 4 0 0 3 0 0 13 1 1391.7773 A5YKK6;H3BVC9 A5YKK6 1051 1063 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2;3 0.00013909 92.611 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 1 1 0.80113 0.88034 31.448 8 Median 0.91986 0.92514 7.5401 2 0 Median 0.65176 0.62255 28.828 3 2 Median 0.72253 0.86365 3.2273 2 1 Median 1.7762 1.614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36855000 20076000 16780000 19269000 10536000 8732900 6799100 3574600 3224500 9356700 5476900 3879900 1430500 488130 942360 0 0 0 0 0 0 34692 503 36470 182604;182605;182606;182607;182608;182609;182610;182611;182612 184954;184955;184956;184957;184958;184959;184960;184961 184954 8 TVVALCGQR SQEAGGRVVPDSCCKTVVALCGQRDHASNI PDSCCKTVVALCGQRDHASNIYKVEGGCIT K T V Q R D 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1002.528 K4DIA7;E9PMR4;P48509;E9PRJ3 K4DIA7 187 195 CD151 Tetraspanin;CD151 antigen yes no 2 0.005475 71.342 By MS/MS 1 0.81243 0.66889 NaN 1 Median NaN NaN NaN 0 0 Median 0.81243 0.66889 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7916800 4288500 3628300 0 0 0 7916800 4288500 3628300 0 0 0 0 0 0 0 0 0 0 0 0 34693 970 36471 182613 184962 184962 1 TVVAPMLDSR ILNPDTLSLLIAENKTVVAPMLDSRAAYSN IAENKTVVAPMLDSRAAYSNFWCGMTSQGY K T V S R A 1 1 0 1 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 2 0 0 10 0 1087.5696 Q8NBJ5;M0QYH0 Q8NBJ5 186 195 COLGALT1 Procollagen galactosyltransferase 1 yes no 2 0.0013065 66.692 By matching By MS/MS 1 1 1.242 1.1095 22.219 2 Median 1.3575 1.2982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1363 0.94818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6892800 2757200 4135700 5258800 2028200 3230600 0 0 0 0 0 0 1634000 728910 905100 0 0 0 0 0 0 34694 3404 36472 182614;182615 184963 184963 1 TVVAPSAVAGK GLPAARVRWESSFSRTVVAPSAVAGKRPPE SFSRTVVAPSAVAGKRPPEPTTPWQEDPEP R T V G K R 3 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 0 3 0 0 11 0 998.57605 Q9NX14 Q9NX14 36 46 NDUFB11 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial yes yes 2 0.0010545 61.161 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1594 0.94214 21.62 5 Median 0.92966 0.87854 NaN 1 1 Median 1.411 1.1869 14.538 2 0 Median 0.75064 0.73935 NaN 1 0 Median 1.1594 0.94214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23720000 11064000 12655000 7785500 4008500 3777000 11527000 4686300 6840600 2698500 1602300 1096200 1708800 767320 941500 0 0 0 0 0 0 34695 4154 36473 182616;182617;182618;182619;182620 184964;184965;184966;184967;184968;184969;184970;184971;184972 184969 9 TVVDSEGRTETTVTR VTKITKPDGIVEERRTVVDSEGRTETTVTR TVVDSEGRTETTVTRHEADSSPRGDPESPR R T V T R H 0 2 0 1 0 0 2 1 0 0 0 0 0 0 0 1 5 0 0 3 0 0 15 1 1649.822 O00165;E9PIQ7;Q5VYD6 O00165 228 242 HAX1 HCLS1-associated protein X-1 yes no 3 0.012943 24.191 By MS/MS 1 1.5056 1.3858 NaN 1 Median NaN NaN NaN 0 0 Median 1.5056 1.3858 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1337500 475880 861650 0 0 0 1337500 475880 861650 0 0 0 0 0 0 0 0 0 0 0 0 34696 1444 36474 182621 184973 184973 1 TVVEALFQR EESVFAVTAVNASEKTVVEALFQRDSLVRQ VNASEKTVVEALFQRDSLVRQSQLVVDWLE K T V Q R D 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1061.5869 P57740 P57740 251 259 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.00077011 98.997 By matching By MS/MS By MS/MS By MS/MS 1 2 2 3 1.2474 1.1789 67.58 8 Median 0.19869 0.20589 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1692 1.2246 12.221 2 0 Median 1.4402 1.2161 14.779 2 0 Median 1.2072 1.2373 30.822 3 0 Median NaN NaN NaN 0 0 Median 31513000 14936000 16576000 1863200 1399900 463280 0 0 0 21821000 10130000 11691000 4401300 1860700 2540600 3427300 1545700 1881600 0 0 0 34697 2518 36475 182622;182623;182624;182625;182626;182627;182628;182629 184974;184975;184976;184977;184978;184979 184975 6 TVVENLPR LVVDWDHHLPPPAAKTVVENLPRTVIRGSQ LPPPAAKTVVENLPRTVIRGSQAELKCPVC K T V P R T 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 926.51853 Q9P0P0;F8WBU5;C9J391;C9J1C6;H7C426 Q9P0P0 57 64 RNF181 E3 ubiquitin-protein ligase RNF181 yes no 2 0.0039759 84.244 By MS/MS By MS/MS 1 1 0.82679 0.7522 14.629 2 Median 0.83694 0.83417 NaN 1 0 Median 0.81676 0.67828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5689000 3032800 2656200 3837200 2068400 1768800 1851800 964390 887440 0 0 0 0 0 0 0 0 0 0 0 0 34698 4207 36476 182630;182631 184980;184981;184982;184983;184984 184982 5 TVVFDSMR FATETFAMGVNMPARTVVFDSMRKHDGSTF GVNMPARTVVFDSMRKHDGSTFRDLLPGEY R T V M R K 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 2 0 0 8 0 953.46405 Q15477 Q15477 675 682 SKIV2L Helicase SKI2W yes yes 2 0.022207 45.081 By MS/MS By matching By matching By matching 1 1 1 1 1.0765 0.99799 22.652 4 Median NaN NaN NaN 0 0 Median 1.2398 1.0664 NaN 1 0 Median 0.84242 0.80469 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93462 0.93395 NaN 1 0 Median 1.6924 1.3723 NaN 1 0 Median 12585000 6108900 6475900 0 0 0 1732700 735170 997530 3862300 2028100 1834300 0 0 0 6014700 2955800 3058900 975160 389910 585240 34699 2955 36477 182632;182633;182634;182635 184985 184985 1 TVVGQITVDMMYGGMR KEQARIKTFRQQHGKTVVGQITVDMMYGGM VVGQITVDMMYGGMRGMKGLVYETSVLDPD K T V M R G 0 1 0 1 0 1 0 3 0 1 0 0 3 0 0 0 2 0 1 3 0 0 16 0 1756.831 O75390;B4DJV2;H0YH82;F8W4S1;F8VTT8;F8VU34 O75390 58 73 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 6.3831E-05 77.64 By MS/MS By matching 1 1 1.3345 1.2522 3.0904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2208 1.2252 NaN 1 0 Median 1.4588 1.2799 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4592900 1996200 2596800 0 0 0 0 0 0 4435300 1938100 2497200 157610 58076 99538 0 0 0 0 0 0 34700 594 36478 182636;182637 184986;184987 184987 2 TVVLPPIVASR DTTCIKLKIDSEIKKTVVLPPIVASRGQSE EIKKTVVLPPIVASRGQSEEPAGKTKSMQE K T V S R G 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 3 0 0 11 0 1150.7074 O75152;E9PQ61;E9PBY7 O75152 443 453 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 0.00029355 72.643 By MS/MS By MS/MS By MS/MS By matching 1 3 4 3 0.85218 0.77652 18.757 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77174 0.82302 NaN 1 0 Median 0.92873 0.78286 5.5447 3 0 Median 0.77354 0.78901 32.358 4 1 Median 0.86376 0.72073 6.3829 3 0 Median 18357000 9840200 8516300 0 0 0 0 0 0 5618400 2991200 2627200 2380400 1323300 1057100 9682800 5159500 4523200 675000 366150 308850 34701 1650 36479 182638;182639;182640;182641;182642;182643;182644;182645;182646;182647;182648 184988;184989;184990;184991;184992;184993;184994 184988 7 TVVNKDVFR HLMPTRYSVDIPLDKTVVNKDVFRDPALKR DIPLDKTVVNKDVFRDPALKRKARREAKVK K T V F R D 0 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 3 0 0 9 1 1076.5978 P61353;K7ELC7 P61353 94 102 RPL27 60S ribosomal protein L27 yes no 2 0.01067 73.26 By MS/MS By MS/MS 1 1 1.1047 1.0333 6.4906 2 Median 1.0908 1.0818 NaN 1 0 Median 1.1187 0.98697 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6417800 3148700 3269100 4836100 2319800 2516300 1581600 828890 752760 0 0 0 0 0 0 0 0 0 0 0 0 34702 2557 36480 182649;182650 184995;184996 184995 2 TVVNKDVFRDPALK HLMPTRYSVDIPLDKTVVNKDVFRDPALKR KTVVNKDVFRDPALKRKARREAKVKFEERY K T V L K R 1 1 1 2 0 0 0 0 0 0 1 2 0 1 1 0 1 0 0 3 0 0 14 2 1600.8937 P61353;K7ELC7 P61353 94 107 RPL27 60S ribosomal protein L27 yes no 2;3;4 8.9169E-07 160.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 4 4 2 4 1 1.0362 1.0596 17.361 20 Median 0.97611 1.0261 13.532 6 2 Median 1.0293 1.0532 26.36 3 0 Median 0.99857 1.1225 6.8358 4 1 Median 1.218 1.0047 2.7964 2 0 Median 1.1059 1.2898 29.719 4 0 Median 1.1221 0.91464 NaN 1 0 Median 218430000 112440000 105980000 152750000 80909000 71841000 24305000 11559000 12746000 23344000 11466000 11878000 10423000 4433200 5989400 6887200 3759800 3127400 719050 316750 402300 34703 2557 36481 182651;182652;182653;182654;182655;182656;182657;182658;182659;182660;182661;182662;182663;182664;182665;182666;182667;182668;182669;182670;182671 184997;184998;184999;185000;185001;185002;185003;185004;185005;185006;185007;185008;185009;185010;185011;185012;185013;185014;185015 185003 19 TVVSGLVNHVPLEQMQNR SLYVEEVDVGEIAPRTVVSGLVNHVPLEQM SGLVNHVPLEQMQNRMVILLCNLKPAKMRG R T V N R M 0 1 2 0 0 2 1 1 1 0 2 0 1 0 1 1 1 0 0 4 0 0 18 0 2020.0524 Q12904 Q12904 188 205 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 2;3 1.0048E-12 127.02 By MS/MS By matching By MS/MS By matching By MS/MS 4 3 1 1 1 0.94957 0.84765 18 10 Median 0.95225 0.91996 24.926 4 1 Median 0.99072 0.84533 11.372 3 0 Median 0.90267 0.88931 NaN 1 0 Median 1.032 0.83989 NaN 1 0 Median 0.60421 0.63375 NaN 1 0 Median NaN NaN NaN 0 0 Median 145060000 68445000 76618000 116830000 54463000 62366000 16698000 8206500 8491700 6880900 3814000 3066900 211430 99602 111830 4442800 1861300 2581500 0 0 0 34704 2768 36482 182672;182673;182674;182675;182676;182677;182678;182679;182680;182681 185016;185017;185018;185019;185020;185021;185022;185023;185024;185025 185021 10 TVVSGLVQFVPKEELQDR SLYVEKIDVGEAEPRTVVSGLVQFVPKEEL SGLVQFVPKEELQDRLVVVLCNLKPQKMRG R T V D R L 0 1 0 1 0 2 2 1 0 0 2 1 0 1 1 1 1 0 0 4 0 0 18 1 2043.1001 P54577 P54577 401 418 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 3 2.7776E-06 56.851 By MS/MS By MS/MS 1 1 1.0037 1.0625 16.444 2 Median 0.94407 0.94585 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0671 1.1935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26799000 13614000 13185000 21197000 10884000 10313000 0 0 0 5602400 2730700 2871700 0 0 0 0 0 0 0 0 0 34705 2482 36483 182682;182683 185026;185027;185028 185026 3 TVVSHSLTTLGLEVAK FQNIPGSELMSSFAKTVVSHSLTTLGLEVA VVSHSLTTLGLEVAKQSQHDKIDASELSFP K T V A K Q 1 0 0 0 0 0 1 1 1 0 3 1 0 0 0 2 3 0 0 3 0 0 16 0 1653.9301 P42166 P42166 463 478 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 3.7068E-08 98.105 By MS/MS By MS/MS By MS/MS By matching 6 6 2 3 1.1083 1.0739 12.582 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.007 1.0285 10.84 6 1 Median 1.1902 1.0455 12.697 6 0 Median 1.2029 1.194 12.454 2 0 Median 1.4347 1.1976 17.254 3 0 Median 161520000 80625000 80899000 0 0 0 0 0 0 139400000 70300000 69103000 9884900 4453500 5431400 10219000 4959900 5259100 2016300 911620 1104700 34706 2306 36484 182684;182685;182686;182687;182688;182689;182690;182691;182692;182693;182694;182695;182696;182697;182698;182699;182700 185029;185030;185031;185032;185033;185034;185035;185036;185037;185038 185032 10 TVVTEHALHQHTISTLHWSPR SSDDGTVKIWDVETKTVVTEHALHQHTIST ALHQHTISTLHWSPRVKDLIVSGDEKGVVF K T V P R V 1 1 0 0 0 1 1 0 4 1 2 0 0 0 1 2 4 1 0 2 0 0 21 0 2449.2615 Q8TEQ6 Q8TEQ6 100 120 GEMIN5 Gem-associated protein 5 yes yes 5 8.9668E-07 44.729 By MS/MS By matching By matching By matching 1 1 1 1 1.1727 1.1943 25.355 4 Median 1.1418 1.077 NaN 1 0 Median 0.94711 0.79137 NaN 1 0 Median 1.2046 1.3244 NaN 1 0 Median 1.5638 1.3769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13275000 6529800 6745600 7152200 3784600 3367700 1605800 671410 934340 3812600 1741900 2070700 704760 331940 372820 0 0 0 0 0 0 34707 3478 36485 182701;182702;182703;182704 185039 185039 1 TVVTGIEMFHK KGDECELLGHSKNIRTVVTGIEMFHKSLER KNIRTVVTGIEMFHKSLERAEAGDNLGALV R T V H K S 0 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 2 0 0 2 0 0 11 0 1260.6536 P49411 P49411 301 311 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 0.00041373 101.11 By MS/MS By matching By MS/MS By matching 5 3 2 1 1.0718 0.98338 28.954 11 Median 1.0583 0.98338 35.889 5 1 Median 1.1018 0.93432 17.682 3 0 Median 1.0334 1.0016 18.123 2 1 Median NaN NaN NaN 0 0 Median 1.3867 1.329 NaN 1 0 Median NaN NaN NaN 0 0 Median 122920000 64625000 58299000 88711000 47362000 41349000 11000000 5119100 5880700 21238000 11130000 10107000 0 0 0 1975200 1013400 961800 0 0 0 34708 2382 36486;36487 182705;182706;182707;182708;182709;182710;182711;182712;182713;182714;182715 185040;185041;185042;185043;185044 185042 1099 5 TVVVVNNPR KVNRMLQPVPKQEGRTVVVVNNPRAPLGPV PKQEGRTVVVVNNPRAPLGPVPVRPPPGPE R T V P R A 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 4 0 0 9 0 996.57163 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 1008 1016 SRCAP Helicase SRCAP yes no 2 0.0032096 66.682 By matching By MS/MS 1 1 0.51384 0.53005 109.82 2 Median NaN NaN NaN 0 0 Median 0.25673 0.24383 NaN 1 0 Median 1.0284 1.1523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3328400 1965900 1362600 0 0 0 2549000 1658700 890260 779460 307160 472300 0 0 0 0 0 0 0 0 0 34709 3199 36488 182716;182717 185045 185045 1 TVWDWELMNDIKPIWQR EEEEEKKPKTKKVEKTVWDWELMNDIKPIW WDWELMNDIKPIWQRPSKEVEEDEYKAFYK K T V Q R P 0 1 1 2 0 1 1 0 0 2 1 1 1 0 1 0 1 3 0 1 0 0 17 1 2229.1041 P14625 P14625 329 345 HSP90B1 Endoplasmin yes yes 3 1.0329E-10 98.312 By MS/MS 1 1.108 1.1027 NaN 1 Median NaN NaN NaN 0 0 Median 1.108 1.1027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5580400 2612500 2968000 0 0 0 5580400 2612500 2968000 0 0 0 0 0 0 0 0 0 0 0 0 34710 2006 36489 182718 185046;185047 185046 2 TVWDWELMNDIKPIWQRPSK EEEEEKKPKTKKVEKTVWDWELMNDIKPIW ELMNDIKPIWQRPSKEVEEDEYKAFYKSFS K T V S K E 0 1 1 2 0 1 1 0 0 2 1 2 1 0 2 1 1 3 0 1 0 0 20 2 2541.2838 P14625 P14625 329 348 HSP90B1 Endoplasmin yes yes 3 6.771E-11 94.057 By MS/MS By MS/MS 2 1 0.96002 1.0161 18.789 3 Plateau 0.72185 0.80767 18.837 2 0 Median 0.96002 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16526000 8478000 8048400 4912500 2754800 2157800 11614000 5723200 5890600 0 0 0 0 0 0 0 0 0 0 0 0 34711 2006 36490 182719;182720;182721 185048;185049;185050;185051 185051 4 TVWDYVGK DLPDTIHIGGRIAPKTVWDYVGKLKSSVSK GGRIAPKTVWDYVGKLKSSVSKELCLIRFH K T V G K L 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 1 2 0 0 8 0 966.48108 Q9BTC0 Q9BTC0 1101 1108 DIDO1 Death-inducer obliterator 1 yes yes 2 0.012659 54.549 By MS/MS By matching By matching 1 2 1 0.9692 0.9773 12.06 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91807 1.0205 NaN 1 0 Median 1.0695 0.9773 3.9769 2 0 Median 0.75463 0.78522 NaN 1 0 Median NaN NaN NaN 0 0 Median 7884900 3983900 3901000 0 0 0 0 0 0 6707100 3428300 3278800 371020 167670 203350 806760 387930 418830 0 0 0 34712 3824 36491 182722;182723;182724;182725 185052;185053 185053 2 TVWEISQK QSIPEIPDDLKQLYKTVWEISQKTVLKMAA DLKQLYKTVWEISQKTVLKMAAERGAFIDQ K T V Q K T 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 1 1 0 1 0 0 8 0 989.5182 P23921;E9PL69 P23921 682 689 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 0.0027808 128.57 By MS/MS By MS/MS By matching 1 3 1 1.1771 1.0638 9.7876 5 Median 1.1771 1.0638 NaN 1 0 Median 1.3026 1.1393 12.927 3 1 Plateau 1.0087 1.0808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36696000 15080000 21616000 13514000 5867000 7646700 19326000 7912800 11414000 3855700 1299900 2555800 0 0 0 0 0 0 0 0 0 34713 2121 36492 182726;182727;182728;182729;182730 185054;185055 185054 2 TVWQYHFR LSKVGQALLQGNTERTVWQYHFRTWPDHGV LQGNTERTVWQYHFRTWPDHGVPSDPGGVL R T V F R T 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 1 1 1 0 0 8 0 1135.5563 Q06124;A0A0U1RRI0 Q06124 418 425 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.0029333 103.29 By MS/MS By matching By matching 1 1 1 1.4476 1.313 0.90525 2 Median 1.3965 1.3214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5007 1.3046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18422000 8149400 10273000 17662000 7810900 9851300 0 0 0 0 0 0 655510 292870 362640 0 0 0 104620 45726 58893 34714 2721 36493 182731;182732;182733 185056;185057 185057 2 TVYGGGCSEMLMAHAVTQLANR HDALCVLAQTVKDSRTVYGGGCSEMLMAHA SEMLMAHAVTQLANRTPGKEAVAMESYAKA R T V N R T 3 1 1 0 1 1 1 3 1 0 2 0 2 0 0 1 2 0 1 2 0 0 22 0 2365.0977 P78371;F5GWF6 P78371 406 427 CCT2 T-complex protein 1 subunit beta yes no 3 0.015304 15.896 By MS/MS By MS/MS By matching 2 1 1 1.1005 1.0149 15.712 4 Median 1.0125 1.0138 23.148 2 0 Median 1.0859 0.91725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1153 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median 13013000 5979000 7034200 4807900 2401700 2406200 6547400 3066200 3481200 0 0 0 0 0 0 1657900 511090 1146800 0 0 0 34715 2644 36494 182734;182735;182736;182737 185058;185059 185059 2 TVYLFDRR ASVGTEEDGGGVGHRTVYLFDRREKESELG GGGVGHRTVYLFDRREKESELGDRPLQVGE R T V R R E 0 2 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 8 1 1068.5716 A6NHR9 A6NHR9 27 34 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0092652 70.912 By MS/MS 1 1.1152 1.4087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1152 1.4087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14683000 7263500 7420000 0 0 0 0 0 0 14683000 7263500 7420000 0 0 0 0 0 0 0 0 0 34716 518 36495 182738 185060 185060 1 TVYNLLSDR ESLRSSVHKRKPLPKTVYNLLSDRDLKKKL RKPLPKTVYNLLSDRDLKKKLKEHGLSIQG K T V D R D 0 1 1 1 0 0 0 0 0 0 2 0 0 0 0 1 1 0 1 1 0 0 9 0 1079.5611 Q9NS91;F8WE49 Q9NS91 246 254 RAD18 E3 ubiquitin-protein ligase RAD18 yes no 2 0.00081745 96.253 By MS/MS By matching 1 1 1.056 0.99315 25.422 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1344 1.1887 NaN 1 0 Median 0.98298 0.82975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5634800 2501900 3132900 0 0 0 0 0 0 5151900 2269900 2882000 482830 231930 250900 0 0 0 0 0 0 34717 4099 36496 182739;182740 185061 185061 1 TVYNLNDK DVYLTVKLLLPGVIKTVYNLNDKQIVKLFS LLPGVIKTVYNLNDKQIVKLFSRIFNCNPD K T V D K Q 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P49916;K7ERZ5;K7EQB6 P49916 317 324 LIG3 DNA ligase 3 yes no 2 0.041504 36.557 By MS/MS 1 0.93829 0.98247 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93829 0.98247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1526700 706270 820460 0 0 0 0 0 0 1526700 706270 820460 0 0 0 0 0 0 0 0 0 34718 2406 36497 182741 185062;185063 185063 2 TVYSHLFDHVVNR LKVEQANNARDALAKTVYSHLFDHVVNRVN AKTVYSHLFDHVVNRVNQCFPFETSSYFIG K T V N R V 0 1 1 1 0 0 0 0 2 0 1 0 0 1 0 1 1 0 1 3 0 0 13 0 1585.8001 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 426 438 MYO6 Unconventional myosin-VI yes no 2 2.0552E-06 128.81 By MS/MS 3 0.46191 0.45236 121.57 2 Median 0.46191 0.45236 121.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17234000 9475300 7758300 17234000 9475300 7758300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34719 164 36498 182742;182743;182744 185064;185065 185065 2 TVYSILR PEEAIKCEDKFTKSKTVYSILRHVAEVLEY EDKFTKSKTVYSILRHVAEVLEYTKDEQLE K T V L R H 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 1 0 0 7 0 850.49125 P05198;G3V4T5;H0YJS4 P05198 107 113 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.0006141 139.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.3043 1.1138 10.949 6 Median 1.3107 1.2247 NaN 1 0 Median 1.2979 1.0793 NaN 1 0 Median 1.458 1.4172 NaN 1 0 Median 1.2747 1.0749 0.63728 2 0 Median NaN NaN NaN 0 0 Median 1.3873 1.1489 NaN 1 0 Median 186120000 79037000 107090000 40639000 17895000 22745000 24531000 9950000 14581000 23370000 10043000 13327000 95123000 40126000 54997000 0 0 0 2460800 1023500 1437300 34720 1862 36499 182745;182746;182747;182748;182749;182750 185066;185067;185068;185069;185070;185071;185072;185073 185066 8 TVYTGIDHHWK GYGDEEEPLHTILGKTVYTGIDHHWKEAVF ILGKTVYTGIDHHWKEAVFATCGQQVDIWD K T V W K E 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 2 1 1 1 0 0 11 0 1355.6622 A0A087WT20;Q9NV06;B3KME9;E5RHM4;A0A087X1F8 A0A087WT20 309 319 DCAF13 DDB1- and CUL4-associated factor 13 yes no 3 0.0015714 45.433 By MS/MS By MS/MS 1 1 1.4493 1.2921 4.6168 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4025 1.335 NaN 1 0 Median 1.4977 1.2506 NaN 1 0 Median 7525000 2857100 4667800 0 0 0 0 0 0 0 0 0 0 0 0 5469200 2159300 3310000 2055700 697870 1357900 34721 13 36500 182751;182752 185074;185075;185076 185075 3 TVYVYLEK ILSEFSSKLLRQDKRTVYVYLEKFMTFQMS LLRQDKRTVYVYLEKFMTFQMSLRREDVWL R T V E K F 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 2 2 0 0 8 0 1013.5433 Q8N3U4 Q8N3U4 1017 1024 STAG2 Cohesin subunit SA-2 yes yes 2 0.028978 51.059 By MS/MS By MS/MS 1 1 1.3966 1.4693 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3966 1.4693 NaN 1 0 Median NaN NaN NaN 0 0 Median 3419500 1277700 2141800 0 0 0 0 0 0 0 0 0 0 0 0 3419500 1277700 2141800 0 0 0 34722 3369 36501 182753;182754 185077;185078 185078 2 TWAGKEELLK LGMILTALLQGLAGRTWAGKEELLKAIACV GLAGRTWAGKEELLKAIACVVTACSAELEK R T W L K A 1 0 0 0 0 0 2 1 0 0 2 2 0 0 0 0 1 1 0 0 0 0 10 1 1173.6394 Q5VYK3;J3KN16;F6XAQ5 Q5VYK3 1581 1590 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.024219 50.805 By MS/MS 1 0.81986 0.8024 NaN 1 Median 0.81986 0.8024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6479500 3508200 2971300 6479500 3508200 2971300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34723 3116 36502 182755 185079 185079 1 TWDRFQMR LRITTRKTPCGEGSKTWDRFQMRIHKRLID PCGEGSKTWDRFQMRIHKRLIDLHSPSEIV K T W M R I 0 2 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 8 1 1138.5342 P60866;G3XAN0 P60866 76 83 RPS20 40S ribosomal protein S20 yes no 2 0.011482 122.74 By MS/MS By MS/MS 2 1 1.1085 1.1347 12.967 3 Plateau 0.99979 1.0224 18.083 2 0 Median 1.2448 1.0613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79447000 36810000 42637000 49966000 23493000 26473000 29481000 13317000 16164000 0 0 0 0 0 0 0 0 0 0 0 0 34724 2530 36503 182756;182757;182758 185080;185081;185082 185082 3 TWEILKEDESGSLK EEPERTKRWEGGYERTWEILKEDESGSLKA RTWEILKEDESGSLKATIEDILFKAKRKRV R T W L K A 0 0 0 1 0 0 3 1 0 1 2 2 0 0 0 2 1 1 0 0 0 0 14 1 1633.8199 D6RID8;Q6P1K8;Q13888;D6RJD3;D6RIT7;D6RGC9;D6RAW1 D6RID8 18 31 GTF2H2C;GTF2H2 General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2;3 9.151E-05 99.522 By MS/MS 2 0.82401 0.89794 36.133 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82401 0.89794 36.133 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18604000 9759900 8844600 0 0 0 0 0 0 18604000 9759900 8844600 0 0 0 0 0 0 0 0 0 34725 827 36504 182759;182760 185083;185084 185084 2 TWELSLYELHR ______________________________ NASKTWELSLYELHRTPQEAIMDGTEIAVS K T W H R T 0 1 0 0 0 0 2 0 1 0 3 0 0 0 0 1 1 1 1 0 0 0 11 0 1445.7303 Q06587 Q06587 13 23 RING1 E3 ubiquitin-protein ligase RING1 yes yes 2;3 0.00014032 68.069 By matching By MS/MS By matching By matching By matching 3 2 3 1 2 0.95783 0.90218 38.988 11 Median 0.91959 0.90218 62.431 3 0 Median NaN NaN NaN 0 0 Median 0.89331 0.89045 12.833 2 0 Median 0.95783 0.84012 39.718 3 0 Median 0.85262 0.86073 NaN 1 0 Median 1.3857 1.1586 33.982 2 0 Median 23738000 11975000 11762000 8273000 3938000 4335000 0 0 0 13423000 7035400 6387900 691740 358190 333550 1069800 522770 546980 279700 120990 158710 34726 2727 36505 182761;182762;182763;182764;182765;182766;182767;182768;182769;182770;182771 185085;185086;185087 185086 3 TWELSLYELQR MSQAVQTNGTQPLSKTWELSLYELQRTPQE PLSKTWELSLYELQRTPQEAITDGLEIVVS K T W Q R T 0 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 1 1 1 0 0 0 11 0 1436.73 Q99496;X6RFN3 Q99496 16 26 RNF2 E3 ubiquitin-protein ligase RING2 yes no 2 0.00013635 105.4 By matching By MS/MS By matching By matching 1 1 1 2 1.4432 1.2534 27.647 5 Median NaN NaN NaN 0 0 Median 2.0581 1.7732 NaN 1 0 Median 1.2926 1.4056 NaN 1 0 Median 1.4829 1.2534 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2375 0.98937 24.573 2 0 Median 10201000 4628800 5572000 0 0 0 1031000 231930 799090 8359200 4068300 4290800 205620 75687 129930 0 0 0 604990 252830 352160 34727 3748 36506 182772;182773;182774;182775;182776 185088;185089 185088 2 TWEQQQEVVSR EQRYQEQGGEASPQRTWEQQQEVVSRNRNE SPQRTWEQQQEVVSRNRNEQESAVHPREIF R T W S R N 0 1 0 0 0 3 2 0 0 0 0 0 0 0 0 1 1 1 0 2 0 0 11 0 1388.6684 Q9UJU6;B4DDD6;H0Y5J4 Q9UJU6 236 246 DBNL Drebrin-like protein yes no 2 1.7734E-06 163.16 By MS/MS By MS/MS By MS/MS 1 2 1 1.1809 1.1115 25.207 4 Median 1.0561 1.0047 NaN 1 0 Median 1.6208 1.3578 35.853 2 0 Median 1.1127 1.1725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34382000 14980000 19403000 14343000 6605500 7737600 18357000 7569100 10788000 1682500 805190 877330 0 0 0 0 0 0 0 0 0 34728 4298 36507 182777;182778;182779;182780 185090;185091;185092;185093;185094 185093 5 TWFDKPNFNR KRTIGSGEPGVPTKKTWFDKPNFNRTNSPG VPTKKTWFDKPNFNRTNSPGFQKKVQFGNE K T W N R T 0 1 2 1 0 0 0 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 10 1 1323.636 Q5T8P6 Q5T8P6 506 515 RBM26 RNA-binding protein 26 no no 2;3 0.00013333 143.85 By matching By MS/MS 1 2 1.2308 1.4094 65.081 3 Plateau 0.45815 0.47399 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0817 1.226 49.505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22821000 12262000 10559000 1345300 895980 449300 0 0 0 21476000 11366000 10110000 0 0 0 0 0 0 0 0 0 34729 3097 36508 182781;182782;182783 185095;185096;185097;185098 185097 4 TWFQEYMNSK SQVVNRAQHQLGEFKTWFQEYMNSKDRRLS LGEFKTWFQEYMNSKDRRLSPATENKLRLH K T W S K D 0 0 1 0 0 1 1 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 10 0 1332.5809 Q8N1F7;H3BVG0;H3BPA9 Q8N1F7 350 359 NUP93 Nuclear pore complex protein Nup93 yes no 2 0.00033784 85.731 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1.1829 1.1286 7.557 6 Median 1.1501 1.1232 NaN 1 0 Median 1.2167 1.0981 NaN 1 0 Median 1.0464 1.1386 0.57288 2 0 Median 1.29 1.1208 NaN 1 0 Median 1.3143 1.3482 NaN 1 0 Median NaN NaN NaN 0 0 Median 23203000 11140000 12063000 2664700 1271300 1393400 767360 371210 396160 17271000 8486300 8784500 1351900 545280 806660 1148200 465440 682770 0 0 0 34730 3356 36509 182784;182785;182786;182787;182788;182789 185099;185100;185101;185102;185103 185102 5 TWNDPSVQQDIK NPENTVFDAKRLIGRTWNDPSVQQDIKFLP IGRTWNDPSVQQDIKFLPFKVVEKKTKPYI R T W I K F 0 0 1 2 0 2 0 0 0 1 0 1 0 0 1 1 1 1 0 1 0 0 12 0 1429.6838 P11021 P11021 102 113 HSPA5 78 kDa glucose-regulated protein yes yes 2 4.7875E-15 150.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 1 1.1295 1.0202 19.91 10 Median 0.99066 0.88698 1.3868 2 1 Median 1.1134 0.97658 4.8799 3 0 Median 1.0483 1.0389 NaN 1 0 Median 1.2223 1.0494 1.0307 2 0 Median 1.6877 1.7273 NaN 1 0 Median 1.4839 1.2276 NaN 1 0 Median 248280000 120030000 128250000 117890000 59374000 58519000 77324000 35922000 41402000 34684000 16930000 17753000 7929600 3637500 4292100 9085800 3607800 5478000 1369200 560460 808720 34731 1948 36510 182790;182791;182792;182793;182794;182795;182796;182797;182798;182799 185104;185105;185106;185107;185108;185109;185110;185111;185112;185113;185114;185115;185116;185117;185118;185119 185107 16 TWNQSIALR FNPPIISRFIRIIPKTWNQSIALRLELFGC IRIIPKTWNQSIALRLELFGCDMY______ K T W L R L 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1087.5774 CON__Q28107;A0A0A0MRJ7;P12259 CON__Q28107 2194 2202 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 0.051617 47.574 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 34732 772 36511 182800 185120 185120 1 TWQANLR QNRWALWFFKNDKSKTWQANLRLISKFDTV FFKNDKSKTWQANLRLISKFDTVEDFWALY K T W L R L 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 7 0 887.46135 D6RBW1;P06730;H0Y8J7 D6RBW1 83 89 EIF4E Eukaryotic translation initiation factor 4E yes no 2 0.020125 77.748 By MS/MS 1 1.2603 1.1922 NaN 1 Median 1.2603 1.1922 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7121600 3426100 3695400 7121600 3426100 3695400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34733 818 36512 182801 185121 185121 1 TWTLELSPELASMTTR IANSLKALIQSRRGKTWTLELSPELASMTT WTLELSPELASMTTRFTDELMEQGLTYKVL K T W T R F 1 1 0 0 0 0 2 0 0 0 3 0 1 0 1 2 4 1 0 0 0 0 16 0 1834.9135 Q92621 Q92621 157 172 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00076393 52.693 By matching By MS/MS By matching 1 4 1 1.0405 1.052 16.07 6 Median NaN NaN NaN 0 0 Median 1.0484 0.93275 NaN 1 0 Median 1.0246 1.1135 13.359 4 0 Median 1.0327 0.89665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10232000 4654200 5578100 0 0 0 168360 88282 80075 9966100 4516900 5449300 97844 49059 48785 0 0 0 0 0 0 34734 3547 36513;36514 182802;182803;182804;182805;182806;182807 185122;185123;185124 185123 1766 2 TWTQTYK ILNSTTIEISELPVRTWTQTYKEQVLEPML EISELPVRTWTQTYKEQVLEPMLNGTEKTP R T W Y K E 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 3 1 1 0 0 0 7 0 926.44978 P11388 P11388 930 936 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.015867 70.268 By matching By MS/MS By MS/MS 1 1 2 1.3899 1.2388 18.741 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1802 1.0718 NaN 1 0 Median 1.5051 1.5772 NaN 1 0 Median 1.4729 1.2388 16.857 2 0 Median 12337000 5514300 6822900 0 0 0 0 0 0 0 0 0 685910 240830 445080 5499000 2399500 3099500 6152300 2873900 3278300 34735 1963 36515 182808;182809;182810;182811 185125;185126 185126 2 TWTVVDAK RIAAYKSILQERVKKTWTVVDAKTLKKEDI LQERVKKTWTVVDAKTLKKEDIQKETVYCL K T W A K T 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 8 0 918.48108 P13010 P13010 275 282 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0042476 82.671 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.057 0.99035 114.72 8 Median 0.259 0.24642 199.06 2 0 Median 0.50699 0.42328 144.82 2 0 Median 0.88421 0.91433 8.9631 2 0 Median 1.3912 1.2032 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4463 1.2051 NaN 1 0 Median 136770000 72786000 63988000 24822000 14348000 10474000 19957000 13695000 6261600 76604000 38846000 37758000 14576000 5611400 8964700 0 0 0 814960 284690 530270 34736 1986 36516 182812;182813;182814;182815;182816;182817;182818;182819 185127;185128;185129;185130;185131;185132;185133;185134;185135;185136 185133 10 TWVQLFPR AFVQLCHISTTLAEKTWVQLFPRLWKILSD STTLAEKTWVQLFPRLWKILSDRQQHALAG K T W P R L 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 8 0 1045.5709 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 2610 2617 TRRAP Transformation/transcription domain-associated protein yes no 2 0.003424 97.071 By MS/MS By matching 1 1 0.82098 0.79582 10.888 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79394 0.8595 NaN 1 0 Median 0.84894 0.73685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4573300 2598600 1974700 0 0 0 0 0 0 4171300 2362600 1808700 401980 236020 165960 0 0 0 0 0 0 34737 991 36517 182820;182821 185137;185138;185139;185140 185140 4 TYADYESVNECMEGVCK HTILLVQPTKRPEGRTYADYESVNECMEGV ADYESVNECMEGVCKMYEEHLKRMNPNSPS R T Y C K M 1 0 1 1 2 0 3 1 0 0 0 1 1 0 0 1 1 0 2 2 0 0 17 0 2053.8067 P84090;G3V279 P84090 18 34 ERH Enhancer of rudimentary homolog yes no 2 5.7876E-08 97.214 By matching By MS/MS 1 1 1.1594 1.0402 7.0005 2 Median NaN NaN NaN 0 0 Median 1.3033 1.0929 NaN 1 0 Median 1.0315 0.98993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9897300 4573400 5323900 0 0 0 1601500 666630 934880 8295800 3906800 4389000 0 0 0 0 0 0 0 0 0 34738 2666 36518 182822;182823 185141;185142 185142 2 TYAFSENPLPTVEIAIR TIAYSIRGQLSWHQKTYAFSENPLPTVEIA AFSENPLPTVEIAIRNTGDADQWCPLLETL K T Y I R N 2 1 1 0 0 0 2 0 0 2 1 0 0 1 2 1 2 0 1 1 0 0 17 0 1919.9993 G5E975;Q12824;A0A0G2JRV3 Q12824 325 341 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 no no 2 1.6967E-12 123.64 By MS/MS By matching By matching By matching 2 1 1 1 0.77541 0.67684 18.318 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64037 0.66537 1.8539 2 0 Median 0.77541 0.67684 NaN 1 0 Median 0.80836 0.82931 NaN 1 0 Median 1.2083 1.004 NaN 1 0 Median 12357000 7150600 5206000 0 0 0 0 0 0 11250000 6597800 4652600 668140 354580 313560 327900 150060 177850 110200 48166 62034 34739 1128;2761 36519 182824;182825;182826;182827;182828 185143;185144 185143 2 TYAICGAIR AEVDKVTGRFNGQFKTYAICGAIRRMGESD FNGQFKTYAICGAIRRMGESDDSILRLAKA K T Y I R R 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1023.5172 Q8WVC2;P63220;Q9BYK1 Q8WVC2 52 60 RPS21 40S ribosomal protein S21 yes no 2 0.00071478 102.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.1068 0.98835 12.145 7 Median 0.92446 0.89726 NaN 1 0 Median 1.1528 0.95859 4.3238 2 0 Median 1.0898 1.096 10.774 2 0 Median 1.0718 0.8464 NaN 1 0 Median 1.1068 1.1324 NaN 1 0 Median NaN NaN NaN 0 0 Median 198550000 91905000 106650000 17931000 9551000 8379700 137930000 62717000 75209000 37314000 17152000 20162000 720090 321610 398470 4660800 2163300 2497500 0 0 0 34740 2623 36520 182829;182830;182831;182832;182833;182834;182835 185145;185146;185147;185148;185149;185150;185151;185152;185153;185154;185155;185156;185157 185148 13 TYAICGAIRR AEVDKVTGRFNGQFKTYAICGAIRRMGESD NGQFKTYAICGAIRRMGESDDSILRLAKAD K T Y R R M 2 2 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 0 0 10 1 1179.6183 Q8WVC2;P63220;Q9BYK1 Q8WVC2 52 61 RPS21 40S ribosomal protein S21 yes no 3 0.066328 20.304 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 968590 0 968590 968590 0 968590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34741 2623 36521 182836 185158 185158 1 TYAIMISR SKVECTYISIDQVPRTYAIMISRPAWLWGA SIDQVPRTYAIMISRPAWLWGAEMGANEHG R T Y S R P 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 1 0 1 0 0 0 8 0 953.50044 Q12765;B8ZZP4;C9J7U9;C9K052 Q12765 65 72 SCRN1 Secernin-1 yes no 2 0.0078694 65.252 By MS/MS By MS/MS 1 2 1.3567 1.1403 20.231 3 Median 1.0091 0.96116 NaN 1 0 Median 1.4763 1.2807 16.414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28922000 13324000 15598000 13343000 6482600 6860600 15579000 6841500 8737100 0 0 0 0 0 0 0 0 0 0 0 0 34742 2755 36522 182837;182838;182839 185159;185160 185159 2 TYAVGIQQVLLK NVTKEYFEFSEFFLKTYAVGIQQVLLKILD FLKTYAVGIQQVLLKILDQYRQKEYVAPRV K T Y L K I 1 0 0 0 0 2 0 1 0 1 2 1 0 0 0 0 1 0 1 2 0 0 12 0 1331.7813 O15397;F5H244 O15397 296 307 IPO8 Importin-8 yes no 2 0.0034263 46.158 By MS/MS By matching By matching 2 2 1 1.1098 1.0071 25.478 5 Median 1.0046 0.97836 4.0879 2 0 Median 1.6288 1.4043 31.523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1098 0.9721 NaN 1 0 Median 8393400 3885100 4508400 5962700 3035100 2927500 2342800 811910 1530900 0 0 0 0 0 0 0 0 0 87933 38021 49912 34743 1545 36523 182840;182841;182842;182843;182844 185161;185162 185161 2 TYAVSYVPK HTEEAKVVPNNDKDRTYAVSYVPKVAGLHK NNDKDRTYAVSYVPKVAGLHKVTVLFAGQN R T Y P K V 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 2 2 0 0 9 0 1026.5386 Q14315 Q14315 335 343 FLNC Filamin-C yes yes 2 0.032216 48.283 By MS/MS 1 0.8368 0.74653 NaN 1 Median NaN NaN NaN 0 0 Median 0.8368 0.74653 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28066000 16817000 11249000 0 0 0 28066000 16817000 11249000 0 0 0 0 0 0 0 0 0 0 0 0 34744 2871 36524 182845 185163 185163 1 TYDATTHFETTCDDIK VPKDLGTESQIFISRTYDATTHFETTCDDI YDATTHFETTCDDIKNIYKRMTGSEFDFEE R T Y I K N 1 0 0 3 1 0 1 0 1 1 0 1 0 1 0 0 5 0 1 0 0 0 16 0 1916.8098 P50395 P50395 403 418 GDI2 Rab GDP dissociation inhibitor beta yes yes 3 0.02573 16.666 By MS/MS 1 1.1148 0.95039 NaN 1 Median NaN NaN NaN 0 0 Median 1.1148 0.95039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3925700 1927000 1998700 0 0 0 3925700 1927000 1998700 0 0 0 0 0 0 0 0 0 0 0 0 34745 2411 36525 182846 185164 185164 1 TYDLPGNFLTQALTQR KLQESGQVTISELCKTYDLPGNFLTQALTQ YDLPGNFLTQALTQRLGRIISGHIDLDNRG K T Y Q R L 1 1 1 1 0 2 0 1 0 0 3 0 0 1 1 0 3 0 1 0 0 0 16 0 1836.937 O94874 O94874 145 160 UFL1 E3 UFM1-protein ligase 1 yes yes 2 0.011015 44.188 By MS/MS By MS/MS 1 1 0.76228 0.74465 4.83 2 Median NaN NaN NaN 0 0 Median 0.80695 0.71964 NaN 1 1 Median 0.72008 0.77052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2335400 1300100 1035300 0 0 0 1112200 579020 533190 1223200 721070 502140 0 0 0 0 0 0 0 0 0 34746 1732 36526 182847;182848 185165;185166 185165 2 TYDRDNSGMIDKNELK TGVWKYITDWQNVFRTYDRDNSGMIDKNEL YDRDNSGMIDKNELKQALSGFGYRLSDQFH R T Y L K Q 0 1 2 3 0 0 1 1 0 1 1 2 1 0 0 1 1 0 1 0 0 0 16 2 1897.884 O75340;A0A024QZ42 O75340 101 116 PDCD6 Programmed cell death protein 6 yes no 3;4 3.7543E-05 68.257 By MS/MS By MS/MS 2 2 0.94101 0.97593 10.061 4 Median 0.85412 0.89784 6.1306 2 0 Median 1.026 1.0498 4.6527 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23802000 11788000 12014000 19781000 9913600 9867300 4021500 1874600 2147000 0 0 0 0 0 0 0 0 0 0 0 0 34747 1659 36527 182849;182850;182851;182852 185167;185168;185169;185170;185171;185172;185173;185174 185168 8 TYDSYLGDDYVR LFRDDTKCLASIAKKTYDSYLGDDYVRAMT AKKTYDSYLGDDYVRAMTNLRQCSTSKLLE K T Y V R A 0 1 0 3 0 0 0 1 0 0 1 0 0 0 0 1 1 0 3 1 0 0 12 0 1465.6361 CON__Q0IIK2;CON__Q29443 CON__Q0IIK2 671 682 yes no 2 0.00077584 90.108 By MS/MS 1 0.29737 0.24052 NaN 1 Median NaN NaN NaN 0 0 Median 0.29737 0.24052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 698550 588920 109630 0 0 0 698550 588920 109630 0 0 0 0 0 0 0 0 0 0 0 0 + 34748 769 36528 182853 185175 185175 1 TYEDIKENLESR APAEFRAQLDPAFIKTYEDIKENLESRRFQ FIKTYEDIKENLESRRFQVVDSRATGRFRG K T Y S R R 0 1 1 1 0 0 3 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 12 1 1495.7155 P25325;B1AH49 P25325 165 176 MPST 3-mercaptopyruvate sulfurtransferase;Sulfurtransferase yes no 2;3 0.0011275 70.17 By MS/MS 2 2.7109 2.4061 88.841 2 Median NaN NaN NaN 0 0 Median 2.7109 2.4061 88.841 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30141000 5289700 24851000 0 0 0 30141000 5289700 24851000 0 0 0 0 0 0 0 0 0 0 0 0 34749 2131 36529 182854;182855 185176;185177 185176 2 TYEDLKR EEEYEDSSGNVVNKKTYEDLKRQGLL____ SGNVVNKKTYEDLKRQGLL___________ K T Y K R Q 0 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 7 1 923.47125 Q12874 Q12874 491 497 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.034992 57.559 By MS/MS 1 0.7765 0.80612 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7765 0.80612 NaN 1 1 Median NaN NaN NaN 0 0 Median 1866900 976600 890280 0 0 0 0 0 0 0 0 0 0 0 0 1866900 976600 890280 0 0 0 34750 2767 36530 182856 185178 185178 1 TYEEGLKHEANNPQLK AAALEFLNRFEEAKRTYEEGLKHEANNPQL YEEGLKHEANNPQLKEGLQNMEARLAERKF R T Y L K E 1 0 2 0 0 1 3 1 1 0 2 2 0 0 1 0 1 0 1 0 0 0 16 1 1869.9221 P31948;F5H783;F5GXD8 P31948 94 109 STIP1 Stress-induced-phosphoprotein 1 yes no 2;3;4 5.792E-14 132.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 6 4 3 1 1 0.94057 0.89617 17.163 20 Median 0.98174 0.90342 19.515 5 0 Median 0.98115 0.91187 15.57 6 1 Median 0.89798 0.97737 12.656 4 0 Median 0.97084 0.89642 15.882 3 0 Plateau 0.70994 0.75724 NaN 1 0 Median 0.89711 0.79955 NaN 1 0 Median 480110000 236830000 243280000 213580000 106750000 106830000 227780000 110770000 117010000 15346000 7732800 7613100 18397000 9367900 9028700 3727500 1475200 2252200 1278300 738950 539350 34751 2212 36531 182857;182858;182859;182860;182861;182862;182863;182864;182865;182866;182867;182868;182869;182870;182871;182872;182873;182874;182875;182876 185179;185180;185181;185182;185183;185184;185185;185186;185187;185188;185189;185190;185191;185192;185193;185194;185195;185196;185197;185198;185199;185200;185201;185202 185196 24 TYEIWHR SLWQNEERAATVTKKTYEIWHRRHDYWLLA RAATVTKKTYEIWHRRHDYWLLAGIINHGY K T Y H R R 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 7 0 1003.4876 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1725 1731 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0021583 114.02 By MS/MS By matching By MS/MS 1 1 1 0.91262 0.99745 27.746 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91262 0.99745 NaN 1 0 Median 1.1359 0.99874 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74332 0.61725 NaN 1 0 Median 14646000 7168400 7477900 0 0 0 0 0 0 9749200 4518200 5231000 1301700 556360 745340 0 0 0 3595300 2093800 1501600 34752 246 36532 182877;182878;182879 185203;185204 185203 2 TYEQMEFPLLK PSRLNQSPSLAPVKRTYEQMEFPLLKKRKL PVKRTYEQMEFPLLKKRKLDDDSDSPSFFE R T Y L K K 0 0 0 0 0 1 2 0 0 0 2 1 1 1 1 0 1 0 1 0 0 0 11 0 1397.6901 Q9H2P0;A0A2R8Y6X0 Q9H2P0 718 728 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 0.022328 34.253 By MS/MS 2 0.83765 0.87537 2.2728 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83765 0.87537 2.2728 2 0 Median NaN NaN NaN 0 0 Median 3934600 2176200 1758400 0 0 0 0 0 0 0 0 0 0 0 0 3934600 2176200 1758400 0 0 0 34753 3946 36533 182880;182881 185205;185206 185205 2 TYEVSLR TICFVYQDPQGRHVKTYEVSLREKEFNKGP DPQGRHVKTYEVSLREKEFNKGPWKQENVE K T Y L R E 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 7 0 866.44978 Q16531;F5GY55;F5H2L3 Q16531 192 198 DDB1 DNA damage-binding protein 1 yes no 2 0.008794 85.265 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 1 1.3067 1.0461 45.835 7 Median 3.3076 3.1918 NaN 1 1 Median 1.3067 1.0461 16.542 3 0 Median 0.83358 0.89831 12.081 2 1 Median 1.694 1.4395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55799000 25317000 30482000 7859900 1527900 6331900 26334000 11936000 14398000 17503000 10350000 7153100 4102200 1502600 2599600 0 0 0 0 0 0 34754 2985 36534 182882;182883;182884;182885;182886;182887;182888 185207;185208;185209;185210;185211;185212;185213;185214 185211 8 TYFNILIKPETLAK STPAVFTMITEQLKKTYFNILIKPETLAKD KTYFNILIKPETLAKDVRLLILEYARWSMI K T Y A K D 1 0 1 0 0 0 1 0 0 2 2 2 0 1 1 0 2 0 1 0 0 0 14 1 1649.9392 O43847;G3V1R5;F5H7V1;H0Y5G9 O43847 801 814 NRD1 Nardilysin yes no 2 0.0060555 49.5 By MS/MS By matching 1 1 0.94437 0.94284 9.6096 2 Median 0.83388 0.8809 NaN 1 0 Median 1.0695 1.0091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3245200 1717300 1528000 2552300 1417500 1134800 692940 299770 393170 0 0 0 0 0 0 0 0 0 0 0 0 34755 1597 36535 182889;182890 185215 185215 1 TYFPHFDLSHGSAQVK AEALERMFLSFPTTKTYFPHFDLSHGSAQV YFPHFDLSHGSAQVKGHGAKVAAALTKAVE K T Y V K G 1 0 0 1 0 1 0 1 2 0 1 1 0 2 1 2 1 0 1 1 0 0 16 0 1832.8846 A0A2R8Y7C0;P69905;G3V1N2;CON__P01966 CON__P01966 42 57 HBA1;HBA2 Hemoglobin subunit alpha no no 2;3;4 4.0206E-06 75.479 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 2 0.019143 0.017719 135.52 6 Median 0.017244 0.015611 128.29 2 2 Median 0.046857 0.038538 NaN 1 1 Median 0.0081363 0.0077204 7.5977 2 2 Median NaN NaN NaN 0 0 Median 0.17344 0.19623 NaN 1 1 Median NaN NaN NaN 0 0 Median 180500000 177490000 3010800 65274000 63922000 1352100 17759000 17025000 734000 91584000 91061000 522700 0 0 0 5885200 5483200 401960 0 0 0 + 34756 738;380 36536 182891;182892;182893;182894;182895;182896;182897;182898;182899 185216;185217;185218;185219;185220;185221;185222;185223;185224 185218 9 TYFTDKK IYEEKHAKRPDADLKTYFTDKKTHLYTLIL KRPDADLKTYFTDKKTHLYTLILNPDNSFE K T Y K K T 0 0 0 1 0 0 0 0 0 0 0 2 0 1 0 0 2 0 1 0 0 0 7 1 901.45453 P27824;D6RGY2;D6RFL1;H0Y9H1 P27824 228 234 CANX Calnexin yes no 2 0.02526 64.757 By MS/MS By MS/MS 2 1 1.284 1.2758 8.1846 3 Plateau 1.1329 1.1419 6.8559 2 0 Median 1.3222 1.28 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8519400 3686700 4832800 2043000 950860 1092100 6476400 2735800 3740700 0 0 0 0 0 0 0 0 0 0 0 0 34757 2158 36537 182900;182901;182902 185225;185226;185227 185226 3 TYGADLASVDFQHASEDAR KTYNFLPEFLVSTQKTYGADLASVDFQHAS DLASVDFQHASEDARKTINQWVKGQTEGKI K T Y A R K 4 1 0 3 0 1 1 1 1 0 1 0 0 1 0 2 1 0 1 1 0 0 19 0 2051.9185 P30740 P30740 111 129 SERPINB1 Leukocyte elastase inhibitor yes yes 3 3.0585E-08 67.995 By matching By matching By MS/MS 1 1 1 1.1665 1.0855 28.962 3 Median 1.7336 1.7184 NaN 1 0 Median 1.1665 1.0062 NaN 1 0 Median 0.99736 1.0855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18125000 8827200 9297400 6060100 2806000 3254100 2843000 1217900 1625100 9221500 4803300 4418200 0 0 0 0 0 0 0 0 0 34758 2197 36538 182903;182904;182905 185228;185229 185229 2 TYGEIFEK YMKLHPEDFPEEDKKTYGEIFEKFHPIR__ FPEEDKKTYGEIFEKFHPIR__________ K T Y E K F 0 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 1 0 1 0 0 0 8 0 985.47566 O95298;E9PRJ5 O95298 107 114 NDUFC2 NADH dehydrogenase [ubiquinone] 1 subunit C2 yes no 2 0.0042854 82.452 By MS/MS By MS/MS By MS/MS 1 1 1 1.5737 1.2966 21.166 3 Plateau 1.0727 0.97694 NaN 1 0 Median 1.6383 1.3451 NaN 1 0 Median 0.91835 0.90157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48711000 19832000 28879000 9846500 4646500 5200000 35940000 13783000 22157000 2924500 1402400 1522200 0 0 0 0 0 0 0 0 0 34759 1762 36539 182906;182907;182908 185230;185231;185232;185233;185234 185234 5 TYGEPESAGPSR GYNDDYYEESYFTTRTYGEPESAGPSRAVR TTRTYGEPESAGPSRAVRQSVTSFPDADAF R T Y S R A 1 1 0 0 0 0 2 2 0 0 0 0 0 0 2 2 1 0 1 0 0 0 12 0 1249.5575 P50402;Q5HY57 P50402 104 115 EMD Emerin yes no 2 0.0014524 52.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.94536 0.81323 16.775 5 Median NaN NaN NaN 0 0 Median 0.79529 0.67358 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1175 0.93762 NaN 1 0 Median 0.83666 0.8541 22.921 2 0 Median 0.97991 0.81323 NaN 1 0 Median 9472900 4869400 4603500 0 0 0 1206100 487680 718440 0 0 0 653240 281080 372150 5299200 2823100 2476100 2314300 1277500 1036800 34760 2412 36540 182909;182910;182911;182912;182913 185235;185236;185237;185238;185239;185240;185241;185242;185243;185244 185235 10 TYGESMLYLDGQR FTFMSEKEVPLVFPKTYGESMLYLDGQRHF PKTYGESMLYLDGQRHFNSMSGPATLRKDY K T Y Q R H 0 1 0 1 0 1 1 2 0 0 2 0 1 0 0 1 1 0 2 0 0 0 13 0 1531.6977 Q9Y305 Q9Y305 408 420 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 3.7242E-11 135.86 By MS/MS By matching By MS/MS By MS/MS 5 5 3 3 1.2316 1.1206 37.179 16 Median 0.90596 0.87053 43.032 5 1 Median 1.5559 1.3213 5.7776 5 0 Median 0.95186 0.93278 5.9613 3 2 Median 1.8372 1.5883 14.323 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130130000 61767000 68365000 54026000 27407000 26619000 8585700 3534300 5051400 46949000 23188000 23761000 20572000 7638100 12934000 0 0 0 0 0 0 34761 4400 36541;36542 182914;182915;182916;182917;182918;182919;182920;182921;182922;182923;182924;182925;182926;182927;182928;182929 185245;185246;185247;185248;185249;185250;185251;185252;185253;185254;185255 185249 1966 11 TYGGCEGPDAMYVK ______________________________ KTYGGCEGPDAMYVKLISSDGHEFIVKREH K T Y V K L 1 0 0 1 1 0 1 3 0 0 0 1 1 0 1 0 1 0 2 1 0 0 14 0 1546.6432 Q15369;E5RHG8;R4GMY8 Q15369 7 20 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 7.4957E-08 100.72 By MS/MS By MS/MS By matching 1 1 1 1.0993 0.9028 9.4568 3 Median NaN NaN NaN 0 0 Median 1.0993 0.9028 NaN 1 0 Median 0.82327 0.79178 NaN 1 0 Median 1.1381 0.95133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38631000 16931000 21700000 0 0 0 32070000 13485000 18585000 6348700 3321200 3027500 211930 124360 87569 0 0 0 0 0 0 34762 846 36543 182930;182931;182932 185256;185257;185258;185259 185258 4 TYGQSTYSR KPIRALDEGDIALLKTYGQSTYSRQIKQVE DIALLKTYGQSTYSRQIKQVEDDIQQLLKK K T Y S R Q 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 2 0 2 0 0 0 9 0 1061.4778 P35998;C9JLS9 P35998 35 43 PSMC2 26S protease regulatory subunit 7 yes no 2 0.0545 43.808 By MS/MS 2 0.79084 0.68096 0.1456 2 Median NaN NaN NaN 0 0 Median 0.79084 0.68096 0.1456 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4519100 2305000 2214100 0 0 0 4519100 2305000 2214100 0 0 0 0 0 0 0 0 0 0 0 0 34763 2253 36544 182933;182934 185260;185261 185261 2 TYHALSNLPK DDKALLVEVQLLESKTYHALSNLPKARAAL LLESKTYHALSNLPKARAALTSARTTANAI K T Y P K A 1 0 1 0 0 0 0 0 1 0 2 1 0 0 1 1 1 0 1 0 0 0 10 0 1142.6084 O00231;J3QS13 O00231 176 185 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2 0.00043466 101.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0094 0.94937 17.806 5 Median 1.0094 0.94937 NaN 1 0 Median 0.9249 0.7907 1.4609 2 0 Median 1.1876 1.1776 NaN 1 0 Median 1.1904 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23337000 10809000 12528000 5999300 2864000 3135300 9177400 4667200 4510200 3097100 1284500 1812700 5063200 1993200 3070100 0 0 0 0 0 0 34764 1448 36545 182935;182936;182937;182938;182939 185262;185263;185264;185265;185266;185267;185268;185269 185267 8 TYHEVVDEIYFK ILSSPYFKVQLYELKTYHEVVDEIYFKVTH ELKTYHEVVDEIYFKVTHVEPWEKGSRKTA K T Y F K V 0 0 0 1 0 0 2 0 1 1 0 1 0 1 0 0 1 0 2 2 0 0 12 0 1541.7402 Q5VTL8 Q5VTL8 81 92 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2;3 0.00041495 91.867 By MS/MS 2 1.001 1.0314 4.895 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.001 1.0314 4.895 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16847000 8005500 8841600 0 0 0 0 0 0 16847000 8005500 8841600 0 0 0 0 0 0 0 0 0 34765 3111 36546 182940;182941 185270;185271;185272 185270 3 TYHPPAQLTHTQFPAASSVGLPSR SSGELFQEYRYGDIRTYHPPAQLTHTQFPA HTQFPAASSVGLPSRTKTAAQGPPPEGEPL R T Y S R T 3 1 0 0 0 2 0 1 2 0 2 0 0 1 4 3 3 0 1 1 0 0 24 0 2562.2979 Q96T58 Q96T58 3313 3336 SPEN Msx2-interacting protein yes yes 4 7.0863E-12 52.359 By MS/MS 1 0.49365 0.52312 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.49365 0.52312 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7707800 4893200 2814500 0 0 0 0 0 0 7707800 4893200 2814500 0 0 0 0 0 0 0 0 0 34766 3741 36547 182942 185273 185273 1 TYHSVGDSVLR CGPSSAVCMHDLKTRTYHSVGDSVLRSATR LKTRTYHSVGDSVLRSATRSLLEFNTTVSC R T Y L R S 0 1 0 1 0 0 0 1 1 0 1 0 0 0 0 2 1 0 1 2 0 0 11 0 1232.6149 P11717 P11717 92 102 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2;3 5.1315E-05 108.9 By matching By MS/MS 1 3 1.5533 1.3002 28.797 4 Median 2.0143 2.044 NaN 1 0 Median 1.3721 1.1384 16.508 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37174000 14332000 22843000 2533200 1040600 1492600 34641000 13291000 21350000 0 0 0 0 0 0 0 0 0 0 0 0 34767 1969 36548 182943;182944;182945;182946 185274;185275;185276;185277 185274 4 TYIPPKGETK DMAKADKARYEREMKTYIPPKGETKKKFKD EREMKTYIPPKGETKKKFKDPNAPKRPPSA K T Y T K K 0 0 0 0 0 0 1 1 0 1 0 2 0 0 2 0 2 0 1 0 0 0 10 1 1132.6128 P09429;Q5T7C4;B2RPK0 P09429 77 86 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2 0.0019325 76.679 By matching By matching By MS/MS By MS/MS By matching By matching 2 1 2 2 1 2 0.7832 0.74426 4.4141 10 Median 0.72896 0.72336 0.40084 2 0 Median 0.80682 0.7427 NaN 1 0 Median 0.71567 0.73505 4.2672 2 0 Median 0.87567 0.77862 6.0854 2 0 Median 0.71971 0.75075 NaN 1 0 Median 0.84564 0.72877 7.1394 2 0 Median 18597000 10152000 8444800 1825700 983010 842650 232740 130580 102160 9791700 5456100 4335600 5687200 3023400 2663700 618870 330480 288390 440400 228140 212260 34768 1915 36549 182947;182948;182949;182950;182951;182952;182953;182954;182955;182956 185278;185279;185280;185281;185282;185283;185284 185278 7 TYIQLLIR LGLQTKEEVSIEVLKTYIQLLIREKHTNLI VSIEVLKTYIQLLIREKHTNLIAFYTCHLP K T Y I R E 0 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1018.6175 P57740 P57740 575 582 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.017646 48.504 By MS/MS By matching 1 2 1.4106 1.2556 8.2881 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.132 1.2167 NaN 1 0 Median 1.561 1.3368 8.8533 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3344400 1593500 1750900 0 0 0 0 0 0 3105900 1494700 1611100 238570 98796 139780 0 0 0 0 0 0 34769 2518 36550 182957;182958;182959 185285 185285 1 TYIQTELPFK PLQEDRLLPAEVKAKTYIQTELPFKAKTLH EVKAKTYIQTELPFKAKTLHEKTSHSSTEA K T Y F K A 0 0 0 0 0 1 1 0 0 1 1 1 0 1 1 0 2 0 1 0 0 0 10 0 1238.6547 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 554 563 WIZ Protein Wiz yes no 2 0.066188 40.987 By MS/MS 1 0.86774 0.89733 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86774 0.89733 NaN 1 1 Median NaN NaN NaN 0 0 Median 4507600 2447500 2060200 0 0 0 0 0 0 0 0 0 0 0 0 4507600 2447500 2060200 0 0 0 34770 656 36551 182960 185286 185286 1 TYKEVVVSVPQR VGSVTVYYEVAGHLRTYKEVVVSVPQRIMA HLRTYKEVVVSVPQRIMARHLHPIQTSFQE R T Y Q R I 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 1 1 0 1 4 0 0 12 1 1403.7773 Q8TEM1 Q8TEM1 1545 1556 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 1.7523E-06 118.4 By MS/MS 4 0.8781 1.0136 9.5729 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8781 1.0136 9.5729 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28091000 15831000 12260000 0 0 0 0 0 0 28091000 15831000 12260000 0 0 0 0 0 0 0 0 0 34771 3477 36552 182961;182962;182963;182964 185287;185288;185289;185290;185291 185290 5 TYKGSEEELADIK LFKKISLEDIQAFEKTYKGSEEELADIKQA EKTYKGSEEELADIKQAYLDFKGDMDQIME K T Y I K Q 1 0 0 1 0 0 3 1 0 1 1 2 0 0 0 1 1 0 1 0 0 0 13 1 1481.725 Q8WXX5 Q8WXX5 119 131 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 0.0003466 96.64 By matching By MS/MS By MS/MS 1 1 2 0.96847 0.9284 17.382 4 Median NaN NaN NaN 0 0 Median 0.75347 0.67901 NaN 1 0 Median 0.85058 0.89019 NaN 1 0 Median 1.1163 0.98017 1.7293 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17120000 9312900 7806800 0 0 0 1813300 1056200 757120 5629800 3473600 2156200 9676600 4783200 4893400 0 0 0 0 0 0 34772 3522 36553 182965;182966;182967;182968 185292;185293;185294 185293 3 TYLAGQIAR LPGSILDNAQSPELRTYLAGQIARACAIFC QSPELRTYLAGQIARACAIFCVDEIVVFDE R T Y A R A 2 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 991.54508 Q5T280 Q5T280 94 102 C9orf114 Putative methyltransferase C9orf114 yes yes 2 0.0070414 52.716 By MS/MS By MS/MS By matching 1 1 1 1.0182 0.88012 36.466 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5039 1.5092 NaN 1 0 Median 1.0182 0.88012 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87505 0.75333 NaN 1 0 Median 15167000 7276300 7891100 0 0 0 0 0 0 4636800 2023200 2613700 6578200 3197600 3380600 0 0 0 3952300 2055400 1896800 34773 3083 36554 182969;182970;182971 185295;185296 185296 2 TYLGEEGKR VDMVDITEDFLVQAKTYLGEEGKRVRNYFC FLVQAKTYLGEEGKRVRNYFCCGLQDFTPE K T Y K R V 0 1 0 0 0 0 2 2 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 1 1051.5298 Q9BV86;S4R338 Q9BV86 102 110 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes no 2 0.04248 36.395 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.3529 1.3873 14.715 4 Median 1.4581 1.5336 NaN 1 0 Median 1.2553 1.1921 NaN 1 0 Median 1.227 1.2549 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5484 1.6084 NaN 1 0 Median NaN NaN NaN 0 0 Median 1967500 839350 1128200 650610 256100 394520 272650 129450 143200 913720 412500 501210 0 0 0 130550 41309 89243 0 0 0 34774 3848 36555 182972;182973;182974;182975 185297;185298 185297 2 TYLGMSTLR SALEVVRKYCEDESRTYLGMSTLRDLIFKR CEDESRTYLGMSTLRDLIFKRPSRQFQYLH R T Y L R D 0 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 2 0 1 0 0 0 9 0 1040.5325 Q92797;A0A087WUE9 Q92797 692 700 SYMPK Symplekin yes no 2 0.0074886 51.346 By matching By MS/MS By MS/MS 1 2 1 1.0469 1.066 21.959 4 Median NaN NaN NaN 0 0 Median 1.0182 0.9602 NaN 1 0 Median 0.87023 0.94391 31.979 2 0 Median 1.4132 1.2035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23578000 12326000 11253000 0 0 0 785260 449600 335660 20745000 10994000 9751300 2047700 882120 1165600 0 0 0 0 0 0 34775 3558 36556 182976;182977;182978;182979 185299;185300 185299 2 TYLISSIPLQGAFNYK VLAVQTELKECMVVKTYLISSIPLQGAFNY YLISSIPLQGAFNYKYTACLCDDNPKTFYW K T Y Y K Y 1 0 1 0 0 1 0 1 0 2 2 1 0 1 1 2 1 0 2 0 0 0 16 0 1813.9614 P12273 P12273 70 85 PIP Prolactin-inducible protein yes yes 2 0.0025627 51.092 By MS/MS By MS/MS By MS/MS 2 2 1 0.098436 0.095813 59.112 4 Median 0.098436 0.095813 13.513 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1477 0.12965 96.88 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6336700 5913700 422990 3641300 3386800 254540 0 0 0 0 0 0 1265800 1097400 168450 1429600 1429600 0 0 0 0 34776 1979 36557 182980;182981;182982;182983;182984 185301;185302;185303;185304;185305 185301 5 TYLPSQVSR LIRTGRLPEAAFLARTYLPSQVSRVVKLWR AAFLARTYLPSQVSRVVKLWRENLSKVNQK R T Y S R V 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 1 0 1 1 0 0 9 0 1049.5506 P35606 P35606 760 768 COPB2 Coatomer subunit beta yes yes 2 0.0025104 82.279 By MS/MS By MS/MS By MS/MS 3 2 1 0.95237 0.88363 6.9869 3 Plateau 0.95237 0.92628 NaN 1 1 Median 0.97048 0.82535 2.9839 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37748000 19372000 18376000 21201000 11211000 9990000 16546000 8160200 8386200 0 0 0 0 0 0 0 0 0 0 0 0 34777 2246 36558 182985;182986;182987;182988;182989;182990 185306;185307;185308;185309;185310;185311;185312 185310 7 TYMDVMR FADGGKTPDPKMNARTYMDVMREQHLTKEE PDPKMNARTYMDVMREQHLTKEEREIRQQL R T Y M R E 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 1 0 0 7 0 914.39901 O75533 O75533 151 157 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0054115 97.071 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1.0811 1.056 18.013 7 Median NaN NaN NaN 0 0 Median 1.2636 1.0699 NaN 1 0 Median 1.1489 1.2634 NaN 1 0 Median 1.0811 0.92091 NaN 1 0 Median 1.0466 1.0802 3.2033 2 0 Median 1.0416 0.85132 25.353 2 0 Median 35308000 16629000 18679000 0 0 0 4225500 1861500 2363900 8974700 4207500 4767300 1726900 679390 1047500 19029000 9261900 9767400 1351700 618650 733050 34778 1683 36559 182991;182992;182993;182994;182995;182996;182997 185313;185314;185315;185316;185317 185315 5 TYNASITLQQQLK HLQDLMEGLTAKVFRTYNASITLQQQLKEL FRTYNASITLQQQLKELTAPDENIPAKILS R T Y L K E 1 0 1 0 0 3 0 0 0 1 2 1 0 0 0 1 2 0 1 0 0 0 13 0 1506.8042 P11387 P11387 591 603 TOP1 DNA topoisomerase 1 yes yes 2;3 3.1955E-22 159.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 7 6 2 3 1.359 1.2665 18.929 19 Median 1.7799 1.729 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1936 1.1567 13.357 7 2 Median 1.6448 1.4102 22.378 6 0 Median 1.1434 1.1646 6.8347 2 0 Median 1.5783 1.3048 6.9737 3 0 Median 469220000 207220000 262000000 7180100 2473700 4706300 0 0 0 327770000 149950000 177810000 95453000 38433000 57019000 22531000 10379000 12152000 16289000 5975000 10314000 34779 1962 36560 182998;182999;183000;183001;183002;183003;183004;183005;183006;183007;183008;183009;183010;183011;183012;183013;183014;183015;183016 185318;185319;185320;185321;185322;185323;185324;185325;185326;185327;185328;185329;185330;185331;185332;185333;185334;185335;185336;185337;185338;185339;185340 185326 23 TYNEPGSQVFK HAMAKDIDLLAKNAKTYNEPGSQVFKDANS KNAKTYNEPGSQVFKDANSIKKIFYMKKAE K T Y F K D 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1268.6037 Q86U86;E7EVG2;H0Y5B5 Q86U86 261 271 PBRM1 Protein polybromo-1 yes no 2 0.00068471 64.654 By MS/MS By MS/MS 1 1 0.91298 0.90906 2.6143 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81093 0.89241 NaN 1 0 Median 1.0279 0.92602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32353000 17257000 15096000 0 0 0 0 0 0 26748000 14404000 12344000 5605300 2853600 2751700 0 0 0 0 0 0 34780 3273 36561 183017;183018 185341;185342 185341 2 TYNFLPEFLVSTQK ASYILKLANRLYGEKTYNFLPEFLVSTQKT KTYNFLPEFLVSTQKTYGADLASVDFQHAS K T Y Q K T 0 0 1 0 0 1 1 0 0 0 2 1 0 2 1 1 2 0 1 1 0 0 14 0 1685.8665 P30740 P30740 97 110 SERPINB1 Leukocyte elastase inhibitor yes yes 2 0.011444 33.225 By MS/MS By MS/MS 1 1 1.1542 1.0356 40.819 2 Median 0.83035 0.77597 NaN 1 0 Median 1.6045 1.3821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9732400 4674700 5057600 6762800 3653400 3109400 2969600 1021400 1948200 0 0 0 0 0 0 0 0 0 0 0 0 34781 2197 36562 183019;183020 185343;185344;185345 185344 3 TYNRVPLHKPTDWQK GFCTKPQESPGAPSRTYNRVPLHKPTDWQK TYNRVPLHKPTDWQKKILIWSGRFKKEDEI R T Y Q K K 0 1 1 1 0 1 0 0 1 0 1 2 0 0 2 0 2 1 1 1 0 0 15 2 1881.985 Q96A26;F8W7Q4;E9PH05 Q96A26 54 68 FAM162A Protein FAM162A yes no 3;4 1.3015E-06 88.706 By MS/MS By MS/MS By matching 2 2 1 0.93466 0.9825 9.4297 5 Median 0.91744 0.9644 2.6298 2 0 Median 1.2205 1.1062 8.9132 2 1 Median 0.82754 0.93393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48226000 23477000 24749000 15382000 8148700 7233800 29442000 13398000 16044000 3400800 1930200 1470600 0 0 0 0 0 0 0 0 0 34782 1085 36563 183021;183022;183023;183024;183025 185346;185347;185348;185349;185350;185351;185352 185350 7 TYQDIQNTIKK EGHTIGIGDSIADSKTYQDIQNTIKKAKQD ADSKTYQDIQNTIKKAKQDVIEVIEKAHNN K T Y K K A 0 0 1 1 0 2 0 0 0 2 0 2 0 0 0 0 2 0 1 0 0 0 11 1 1350.7143 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 698 708 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.016802 39.657 By MS/MS By MS/MS 1 1 0.76028 0.74356 6.8455 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72812 0.78044 NaN 1 1 Median 0.79387 0.70843 NaN 1 1 Median 7166100 3829600 3336600 0 0 0 0 0 0 0 0 0 0 0 0 4818900 2697200 2121700 2347200 1132300 1214900 34783 486 36564 183026;183027 185353;185354 185354 2 TYQELLVNQNPIAQPLASR PDGPEAQAEACSGERTYQELLVNQNPIAQP LLVNQNPIAQPLASRRLTRKLYKCIKKAVK R T Y S R R 2 1 2 0 0 3 1 0 0 1 3 0 0 0 2 1 1 0 1 1 0 0 19 0 2154.1433 Q9NX24;D6RC52;D6RCB9;J3QSY4 Q9NX24 23 41 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 2;3 1.7402E-30 185.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 4 2 3 1 0.73804 0.76297 18.015 14 Median 0.8594 0.85544 0.20287 2 0 Median 0.97588 0.8135 5.4914 2 1 Median 0.61094 0.60322 17.516 4 1 Median 0.9316 0.77184 1.19 2 0 Median 0.73189 0.76057 2.3407 3 0 Median 0.70441 0.63246 NaN 1 0 Median 128850000 73625000 55228000 8156700 4214600 3942100 2083000 962980 1120000 64920000 37822000 27099000 5712900 2861500 2851400 47354000 27388000 19966000 626040 376510 249530 34784 4156 36565 183028;183029;183030;183031;183032;183033;183034;183035;183036;183037;183038;183039;183040;183041 185355;185356;185357;185358;185359;185360;185361;185362;185363;185364;185365;185366;185367;185368;185369;185370;185371;185372;185373;185374;185375;185376;185377;185378;185379 185372 25 TYQELLVNQNPIAQPLASRR PDGPEAQAEACSGERTYQELLVNQNPIAQP LVNQNPIAQPLASRRLTRKLYKCIKKAVKQ R T Y R R L 2 2 2 0 0 3 1 0 0 1 3 0 0 0 2 1 1 0 1 1 0 0 20 1 2310.2444 Q9NX24;D6RC52;D6RCB9;J3QSY4 Q9NX24 23 42 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes no 3 0.00026458 32.858 By matching By MS/MS 1 1 1.1349 1.1384 36.932 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6508 1.4782 NaN 1 0 Median 0.78017 0.87678 NaN 1 0 Median NaN NaN NaN 0 0 Median 4207500 2182000 2025400 0 0 0 0 0 0 0 0 0 451110 166260 284850 3756400 2015800 1740600 0 0 0 34785 4156 36566 183042;183043 185380;185381 185380 2 TYQGSYGFR PAPSWPLSSSVPSQKTYQGSYGFRLGFLHS SVPSQKTYQGSYGFRLGFLHSGTAKSVTCT K T Y F R L 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 1 1 0 2 0 0 0 9 0 1077.488 A0A0U1RQC9;P04637;A0A087WZU8;J3KP33;E7EQX7;E7EMR6;E9PCY9;S4R334 A0A0U1RQC9 63 71 TP53 Cellular tumor antigen p53 yes no 2 3.4867E-09 138.83 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.116 0.93979 22.827 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2372 1.2143 NaN 1 1 Median 1.3842 1.2101 35.745 2 1 Median 0.84242 0.8416 8.1297 2 0 Median 1.1208 0.93828 4.2134 2 1 Median 92243000 44620000 47623000 0 0 0 0 0 0 17285000 7709800 9575000 29735000 13379000 16356000 32629000 17228000 15402000 12594000 6303500 6290800 34786 299 36567 183044;183045;183046;183047;183048;183049;183050;183051;183052 185382;185383;185384;185385;185386;185387;185388;185389;185390;185391;185392 185383 11 TYQLVYFLDK LDMKAIEAVAISPWKTYQLVYFLDKILQKS ISPWKTYQLVYFLDKILQKSPLPPGNVKKL K T Y D K I 0 0 0 1 0 1 0 0 0 0 2 1 0 1 0 0 1 0 2 1 0 0 10 0 1288.6703 Q9H4A4;A6NKB8 Q9H4A4 532 541 RNPEP Aminopeptidase B yes no 2 0.0088316 45.997 By MS/MS By MS/MS 1 1 1.1451 1.023 1.7126 2 Median 1.0969 1.0355 NaN 1 0 Median 1.1954 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15437000 6637400 8799600 9438100 4285400 5152600 5998900 2352000 3646900 0 0 0 0 0 0 0 0 0 0 0 0 34787 3964 36568 183053;183054 185393;185394 185393 2 TYQVKPIR IQEVMESYEVEIDGKTYQVKPIRNLNGHSI EVEIDGKTYQVKPIRNLNGHSIGQYRIHAG K T Y I R N 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 0 8 1 1003.5815 P50579;F8VRR3;F8VQZ7 P50579 319 326 METAP2 Methionine aminopeptidase 2 yes no 2 0.033656 68.422 By MS/MS By matching 2 1 0.88573 0.81588 47.888 3 Median NaN NaN NaN 0 0 Median 0.70861 0.65006 32.132 2 0 Median 1.2232 1.3491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4201600 2525400 1676200 0 0 0 3781700 2340000 1441700 419950 185400 234550 0 0 0 0 0 0 0 0 0 34788 2418 36569 183055;183056;183057 185395;185396 185396 2 TYQVTPMTPR FAPKDFMFQPLDGLKTYQVTPMTPRSANAF LDGLKTYQVTPMTPRSANAFLTPSYTWTPL K T Y P R S 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 3 0 1 1 0 0 10 0 1192.591 Q15398 Q15398 322 331 DLGAP5 Disks large-associated protein 5 yes yes 2 0.069818 40.352 By MS/MS 1 1.5664 1.6771 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5664 1.6771 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2460100 1027900 1432200 0 0 0 0 0 0 2460100 1027900 1432200 0 0 0 0 0 0 0 0 0 34789 2948 36570 183058 185397 185397 1 TYRENVGGPGAPEGTPAGR PLGTAPHCPRLPLRKTYRENVGGPGAPEGT NVGGPGAPEGTPAGRARGGSPAPLPAKVDE K T Y G R A 2 2 1 0 0 0 2 5 0 0 0 0 0 0 3 0 2 0 1 1 0 0 19 1 1884.9078 A0A087WWH3;Q9NZM4 A0A087WWH3 1338 1356 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein yes no 3 0.00066402 31.462 By MS/MS 1 0.73511 0.92862 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73511 0.92862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2067200 1145000 922250 0 0 0 0 0 0 2067200 1145000 922250 0 0 0 0 0 0 0 0 0 34790 59 36571 183059 185398 185398 1 TYRPELIK QAEGFYNSFLEQLRKTYRPELIKDGKFGAY FLEQLRKTYRPELIKDGKFGAYMQVHIQND K T Y I K D 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 1 0 0 0 8 1 1018.5811 Q8TEA8;A0A2R8Y6X2;A0A2R8YCT7;A0A087WZV9 Q8TEA8 116 123 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1;D-tyrosyl-tRNA(Tyr) deacylase yes no 2 0.057159 55.676 By matching By MS/MS By matching By matching By matching 1 2 1 1 1 0.90735 0.80692 22.401 6 Median 0.99181 1.0438 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81513 0.87738 26.608 2 0 Median 1.0119 0.89575 NaN 1 0 Median 0.58258 0.61272 NaN 1 0 Median 0.83009 0.7114 NaN 1 0 Median 21584000 11731000 9852700 2945000 1416800 1528200 0 0 0 11531000 6008700 5521900 2076100 993180 1082900 3508200 2415600 1092600 1523800 896670 627120 34791 3476 36572 183060;183061;183062;183063;183064;183065 185399 185399 1 TYRPELIKDGK QAEGFYNSFLEQLRKTYRPELIKDGKFGAY QLRKTYRPELIKDGKFGAYMQVHIQNDGPV K T Y G K F 0 1 0 1 0 0 1 1 0 1 1 2 0 0 1 0 1 0 1 0 0 0 11 2 1318.7245 Q8TEA8;A0A2R8Y6X2;A0A087WZV9 Q8TEA8 116 126 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1;D-tyrosyl-tRNA(Tyr) deacylase yes no 2;3 5.7445E-05 84.17 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.80939 0.86071 15.139 4 Median 0.76523 0.81481 NaN 1 0 Median 0.80673 0.69946 NaN 1 0 Median 0.81206 0.9092 NaN 1 0 Median 1.205 0.99398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21365000 10401000 10963000 5595200 2886300 2709000 3168700 1767300 1401300 7072000 3255800 3816200 5528900 2491900 3037000 0 0 0 0 0 0 34792 3476 36573 183066;183067;183068;183069;183070 185400;185401;185402;185403;185404;185405;185406 185404 7 TYRPLNDVHIK LETLDELEKLPVNEKTYRPLNDVHIKDITI VNEKTYRPLNDVHIKDITIHANPFAQ____ K T Y I K D 0 1 1 1 0 0 0 0 1 1 1 1 0 0 1 0 1 0 1 1 0 0 11 1 1354.7357 H7BZ14;Q9H2H8;B8ZZ77 H7BZ14 159 169 PPIL3 Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase-like 3 yes no 3 0.0027972 39.918 By MS/MS By MS/MS 1 1 1.1103 0.98123 37.622 2 Median NaN NaN NaN 0 0 Median 1.4512 1.2803 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84956 0.75204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2798200 1306600 1491600 0 0 0 1670300 757930 912340 0 0 0 1127900 548630 579250 0 0 0 0 0 0 34793 1250 36574 183071;183072 185407;185408 185407 2 TYSLGSALRPSTSR SRPSSSRSYVTTSTRTYSLGSALRPSTSRS RTYSLGSALRPSTSRSLYASSPGGVYATRS R T Y S R S 1 2 0 0 0 0 0 1 0 0 2 0 0 0 1 4 2 0 1 0 0 0 14 1 1494.7791 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 37 50 VIM Vimentin yes no 2;3 2.1298E-07 104.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 6 5 13 11 0.91022 0.9098 53.241 43 Median 0.83103 0.83911 23.931 4 1 Linear 1.0273 0.92952 11.822 4 0 Median 0.89857 0.97051 21.131 6 0 Median 1.0292 0.94696 6.0805 5 0 Median 0.94464 1.0245 32.804 13 0 Median 0.63484 0.57389 70.96 11 0 Median 1188000000 645670000 542370000 206770000 125690000 81081000 106640000 51105000 55530000 98749000 55845000 42904000 78754000 37051000 41704000 441840000 226230000 215620000 255290000 149750000 105540000 34794 1907 36575 183073;183074;183075;183076;183077;183078;183079;183080;183081;183082;183083;183084;183085;183086;183087;183088;183089;183090;183091;183092;183093;183094;183095;183096;183097;183098;183099;183100;183101;183102;183103;183104;183105;183106;183107;183108;183109;183110;183111;183112;183113;183114;183115 185409;185410;185411;185412;185413;185414;185415;185416;185417;185418;185419;185420;185421;185422;185423;185424;185425;185426;185427;185428;185429;185430;185431;185432;185433;185434;185435;185436;185437;185438;185439;185440;185441;185442;185443;185444;185445;185446;185447;185448;185449;185450;185451;185452;185453;185454;185455;185456;185457;185458;185459;185460;185461;185462;185463;185464;185465;185466 185453 58 TYSMGGAYTAEQENEPTVGVIPR YNATVLAYGQTGSGKTYSMGGAYTAEQENE TAEQENEPTVGVIPRVIQLLFKEIDKKSDF K T Y P R V 2 1 1 0 0 1 3 3 0 1 0 0 1 0 2 1 3 0 2 2 0 0 23 0 2469.1482 O95239 O95239 95 117 KIF4A Chromosome-associated kinesin KIF4A yes yes 2;3 2.3083E-34 138.19 By MS/MS By matching 2 3 0.78969 0.7489 8.831 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72248 0.79449 10.721 2 0 Median 0.85536 0.7489 8.7012 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21124000 11311000 9813300 0 0 0 0 0 0 20276000 10846000 9430900 847820 465410 382410 0 0 0 0 0 0 34795 1757 36576 183116;183117;183118;183119;183120 185467;185468;185469 185469 3 TYSTSFTPMYHAVTK TEDEAIHKYGIENVKTYSTSFTPMYHAVTK TYSTSFTPMYHAVTKRKTKCVMKMVCANKE K T Y T K R 1 0 0 0 0 0 0 0 1 0 0 1 1 1 1 2 4 0 2 1 0 0 15 0 1732.8131 P00390 P00390 442 456 GSR Glutathione reductase, mitochondrial yes yes 2;3 0.00054667 59.57 By MS/MS 2 0.84308 0.78423 14.721 2 Median 0.84308 0.78423 14.721 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35004000 21491000 13513000 35004000 21491000 13513000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34796 1817 36577 183121;183122 185470;185471 185471 2 TYSVEYLPK NKEEAQVTPDSDKNKTYSVEYLPKVTGLHK DSDKNKTYSVEYLPKVTGLHKVTVLFAGQH K T Y P K V 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 2 1 0 0 9 0 1098.5597 O75369;E7EN95 O75369 314 322 FLNB Filamin-B yes no 2 0.0027536 69.825 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0588 1.0248 12.733 6 Median 1.0422 1.0259 0.92686 2 0 Median 1.1331 1.0069 8.6102 2 0 Median 0.68066 0.75792 NaN 1 0 Median 1.0977 1.0304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68423000 35756000 32667000 33328000 17775000 15553000 28642000 14035000 14608000 5584300 3506200 2078200 868800 440180 428610 0 0 0 0 0 0 34797 1664 36578 183123;183124;183125;183126;183127;183128 185472;185473;185474;185475;185476;185477;185478 185473 7 TYSVVPMTSR LAQDSACSQRALQLRTYSVVPMTSRLGLIE ALQLRTYSVVPMTSRLGLIEWLENTVTLKD R T Y S R L 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 2 2 0 1 2 0 0 10 0 1139.5645 P78527 P78527 3790 3799 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.8138E-05 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 2 1 1.1791 0.9806 15.344 9 Median 0.82602 0.79869 NaN 1 0 Median 1.2029 0.98958 1.2888 2 0 Median 0.78778 0.81793 NaN 1 0 Median 1.2748 1.1158 4.0175 2 0 Median 0.7769 0.80138 11.439 2 1 Median 1.2672 1.0536 NaN 1 0 Median 221060000 115700000 105350000 48108000 26566000 21542000 42934000 19225000 23709000 88621000 49144000 39478000 17594000 7869200 9724700 21073000 11716000 9357200 2727300 1184400 1543000 34798 2647 36579 183129;183130;183131;183132;183133;183134;183135;183136;183137;183138 185479;185480;185481;185482;185483;185484;185485;185486;185487;185488;185489;185490;185491;185492;185493;185494;185495;185496 185492 18 TYSYLNKLPVK DGCKSGINCPIQKDKTYSYLNKLPVKSEYP QKDKTYSYLNKLPVKSEYPSV_________ K T Y V K S 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 1 1 0 2 1 0 0 11 1 1324.7391 G3V2V8;J3KMY5;H0YIZ1;G3V3E8;E7EMS2;G3V3D1;P61916 G3V2V8 106 116 NPC2 Epididymal secretory protein E1 yes no 3 0.041026 31.185 By MS/MS 1 0.86963 0.8709 NaN 1 Median 0.86963 0.8709 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5039100 2843300 2195800 5039100 2843300 2195800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34799 858 36580 183139 185497 185497 1 TYSYLTPDLWK TLGNFAKATFDAISKTYSYLTPDLWKETVF AISKTYSYLTPDLWKETVFTKSPYQEFTDH K T Y W K E 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 2 1 2 0 0 0 11 0 1385.6867 P15880;H0YEN5;E9PQD7 P15880 247 257 RPS2 40S ribosomal protein S2 yes no 2 0.00015771 105.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 2 2 1.0232 0.89433 37.092 11 Median 0.98986 0.89433 21.415 3 1 Median 1.0232 0.85806 NaN 1 1 Median 0.77996 0.80548 32.626 2 0 Median 1.2586 1.0651 NaN 1 0 Median 1.1013 1.1128 5.171 2 0 Median 0.53748 0.44104 22.483 2 0 Median 214380000 105660000 108710000 151290000 75060000 76235000 22037000 10903000 11134000 8740500 4474900 4265600 1665300 700880 964420 28575000 12869000 15706000 2066700 1657300 409420 34800 2020 36581 183140;183141;183142;183143;183144;183145;183146;183147;183148;183149;183150 185498;185499;185500;185501;185502;185503;185504;185505;185506;185507;185508;185509;185510;185511 185502 14 TYTAYVDLEK SEFVILRDEKWGGNKTYTAYVDLEKDFAAE WGGNKTYTAYVDLEKDFAAEVVHPGDLKNS K T Y E K D 1 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 2 1 0 0 10 0 1201.5867 P54577;A0A0C4DGZ5 P54577 288 297 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.0043036 53.683 By MS/MS By MS/MS 1 1 1.3965 1.2409 15.813 2 Median 1.4811 1.3878 NaN 1 0 Median 1.3167 1.1097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21414000 8754300 12659000 14394000 5274200 9119600 7019800 3480100 3539700 0 0 0 0 0 0 0 0 0 0 0 0 34801 2482 36582 183151;183152 185512;185513 185512 2 TYTDELTPIESAVSVFK YNLLSLRFNSRIRVKTYTDELTPIESAVSV TDELTPIESAVSVFKAANWYEREIWDMFGV K T Y F K A 1 0 0 1 0 0 2 0 0 1 1 1 0 1 1 2 3 0 1 2 0 0 17 0 1898.9513 O75489 O75489 145 161 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.0005337 41.401 By MS/MS By matching 1 1 1.0473 0.93653 24.65 2 Median 0.84653 0.78673 NaN 1 0 Median 1.2956 1.1149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6276500 3304700 2971800 5983400 3169700 2813700 293130 135070 158060 0 0 0 0 0 0 0 0 0 0 0 0 34802 1678 36583 183153;183154 185514;185515;185516 185516 3 TYTFQGTEENIGILPR QSRLIFTYGLTNSGKTYTFQGTEENIGILP YTFQGTEENIGILPRTLNVLFDSLQERLYT K T Y P R T 0 1 1 0 0 1 2 2 0 2 1 0 0 1 1 0 3 0 1 0 0 0 16 0 1837.921 Q96Q89;A0A0A0MSJ5 Q96Q89 159 174 KIF20B Kinesin-like protein KIF20B;Kinesin-like protein yes no 2 7.2976E-10 103.91 By MS/MS By matching 2 1 0.82515 0.75487 11.334 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77617 0.81906 11.542 2 0 Median 0.82515 0.71477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7092600 3881700 3211000 0 0 0 0 0 0 6938300 3805700 3132600 154310 75917 78391 0 0 0 0 0 0 34803 3717 36584 183155;183156;183157 185517;185518 185517 2 TYTIANQFPLNK AIAYGYNNIQMTLPKTYTIANQFPLNKLTE LPKTYTIANQFPLNKLTELLRHDMAAAGFT K T Y N K L 1 0 2 0 0 1 0 0 0 1 1 1 0 1 1 0 2 0 1 0 0 0 12 0 1408.7351 Q9NSD9 Q9NSD9 384 395 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0036374 68.735 By MS/MS 1 0.90424 0.85665 NaN 1 Median 0.90424 0.85665 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8212900 4335000 3877800 8212900 4335000 3877800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34804 4102 36585 183158 185519 185519 1 TYTQLVR TPEKWDIITRKGGERTYTQLVRLIILDEIH ITRKGGERTYTQLVRLIILDEIHLLHDDRG R T Y V R L 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 7 0 879.48142 O75643;A0A494C1A5 O75643 604 610 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0026408 117.7 By MS/MS By matching By matching 1 1 1 1.3704 1.122 4.0038 3 Median NaN NaN NaN 0 0 Median 1.3704 1.1683 NaN 1 0 Median 0.98819 1.0784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3784 1.122 NaN 1 0 Median 21717000 10423000 11293000 0 0 0 9348400 4071000 5277400 11114000 5826400 5287300 0 0 0 0 0 0 1254500 526000 728520 34805 1688 36586 183159;183160;183161 185520;185521 185521 2 TYTTQLEDLR VTMYNFRYPTTEELKTYTTQLEDLRQEASN TEELKTYTTQLEDLRQEASNLQTQENMTEE K T Y L R Q 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 3 0 1 0 0 0 10 0 1238.6143 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4500 4509 SYNE2 Nesprin-2 yes no 2 0.00041856 105.78 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.5759 1.3153 27.38 5 Median NaN NaN NaN 0 0 Median 2.163 1.8378 NaN 1 0 Median 0.94347 0.99659 NaN 1 0 Median 1.192 1.0375 NaN 1 0 Median 1.584 1.664 NaN 1 0 Median 1.5759 1.3153 NaN 1 0 Median 18257000 8383800 9873400 0 0 0 3428600 1070800 2357900 9545300 5151100 4394200 1489900 634650 855280 3214700 1331600 1883000 578740 195720 383020 34806 3521 36587 183162;183163;183164;183165;183166 185522;185523;185524;185525 185522 4 TYTVNTLQTLTSQLLK LKFKQCLSKALHLMKTYTVNTLQTLTSQLL YTVNTLQTLTSQLLKRDPSSVPNADNAFTL K T Y L K R 0 0 1 0 0 2 0 0 0 0 4 1 0 0 0 1 5 0 1 1 0 0 16 0 1823.004 Q96JB2 Q96JB2 265 280 COG3 Conserved oligomeric Golgi complex subunit 3 yes yes 2 0.0012542 38.634 By MS/MS 1 1.507 1.342 NaN 1 Median NaN NaN NaN 0 0 Median 1.507 1.342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1361100 590130 770940 0 0 0 1361100 590130 770940 0 0 0 0 0 0 0 0 0 0 0 0 34807 3683 36588 183167 185526;185527 185527 2 TYTWNTKEEAK FTPKKEEEESQPAKKTYTWNTKEEAKQAFK PAKKTYTWNTKEEAKQAFKELLKEKRVPSN K T Y A K Q 1 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 3 1 1 0 0 0 11 1 1369.6514 O75400;A0A3F2YNY6;F5H578 O75400 387 397 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 3 0.011346 29.544 By MS/MS By matching 1 1 1.4193 1.4456 16.117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4158 1.6201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4229 1.2899 NaN 1 0 Median 3098100 1260500 1837700 0 0 0 0 0 0 2521700 999420 1522300 0 0 0 0 0 0 576430 261060 315370 34808 1670 36589 183168;183169 185528;185529 185529 2 TYTYVWHATTR SPEWFKEDNAIQPNKTYTYVWHATTRSGPE QPNKTYTYVWHATTRSGPENPGSACRAWAY K T Y T R S 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 1 2 1 0 0 11 0 1397.6728 CON__Q28107 CON__Q28107 1692 1702 yes yes 3 0.020147 37.426 By MS/MS 1 0.24121 0.23071 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.24121 0.23071 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 995730 856710 139020 0 0 0 0 0 0 995730 856710 139020 0 0 0 0 0 0 0 0 0 + 34809 772 36590 183170 185530 185530 1 TYVGAMPGK VGGMTDVAEIKGHRRTYVGAMPGKIIQCLK IKGHRRTYVGAMPGKIIQCLKKTKTENPLI R T Y G K I 1 0 0 0 0 0 0 2 0 0 0 1 1 0 1 0 1 0 1 1 0 0 9 0 922.45824 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 450 458 LONP1 Lon protease homolog, mitochondrial yes no 2 0.029888 36.395 By MS/MS 1 1.1292 0.96609 NaN 1 Median NaN NaN NaN 0 0 Median 1.1292 0.96609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4809100 2213500 2595600 0 0 0 4809100 2213500 2595600 0 0 0 0 0 0 0 0 0 0 0 0 34810 1370 36591 183171 185531 185531 1 TYVLNPLAPEFIPR FEQIKAQLEALELKKTYVLNPLAPEFIPRA KTYVLNPLAPEFIPRALRLQHSGSTNKQQQ K T Y P R A 1 1 1 0 0 0 1 0 0 1 2 0 0 1 3 0 1 0 1 1 0 0 14 0 1628.8926 J3QS41;P42694 J3QS41 1098 1111 HELZ Probable helicase with zinc finger domain yes no 2 0.00088765 56.783 By MS/MS By matching By matching 1 1 1 0.53436 0.53642 24.41 3 Median 0.53436 0.53642 NaN 1 0 Median 0.83883 0.74332 NaN 1 0 Median 0.41312 0.46102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1991400 1152600 838830 1205500 728830 476640 375050 143230 231820 410900 280530 130370 0 0 0 0 0 0 0 0 0 34811 1355 36592 183172;183173;183174 185532 185532 1 TYVPALEQSADGHK NAQSQQYLYWDGERRTYVPALEQSADGHKE RTYVPALEQSADGHKETGAPSKEGKEKKEK R T Y H K E 2 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 1 1 0 0 14 0 1514.7365 P98175 P98175 614 627 RBM10 RNA-binding protein 10 yes yes 3 0.0011478 56.599 By MS/MS By matching By MS/MS 1 1 1 1.0121 0.98759 56.667 2 Median NaN NaN NaN 0 0 Median 1.6755 1.4743 NaN 1 0 Median 0.61138 0.66154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4711400 2475800 2235600 0 0 0 1823100 750290 1072800 2888300 1725500 1162800 0 0 0 0 0 0 0 0 0 34812 2671 36593 183175;183176;183177 185533;185534 185533 2 TYVPALEQSADGHKETGAPSK NAQSQQYLYWDGERRTYVPALEQSADGHKE EQSADGHKETGAPSKEGKEKKEKHKTKTAQ R T Y S K E 3 0 0 1 0 1 2 2 1 0 1 2 0 0 2 2 2 0 1 1 0 0 21 1 2185.0651 P98175 P98175 614 634 RBM10 RNA-binding protein 10 yes yes 4 0.017041 16.506 By MS/MS By matching 1 1 0.68388 0.77544 11.577 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73348 0.8416 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63764 0.71449 NaN 1 0 Median NaN NaN NaN 0 0 Median 8527900 5167800 3360100 0 0 0 0 0 0 4878400 2859100 2019300 0 0 0 3649500 2308600 1340900 0 0 0 34813 2671 36594 183178;183179 185535 185535 1 TYVTPPGTGFLPGDTAR VGVVRDGKVLANPRRTYVTPPGTGFLPGDT VTPPGTGFLPGDTARHHRAVILDLLQEALT R T Y A R H 1 1 0 1 0 0 0 3 0 0 1 0 0 1 3 0 4 0 1 1 0 0 17 0 1748.8733 Q9NPF4;G3V445 Q9NPF4 31 47 OSGEP Probable tRNA N6-adenosine threonylcarbamoyltransferase yes no 2 1.0738E-08 98.105 By MS/MS By matching 1 1 0.64183 0.57627 27.669 2 Median 0.5077 0.47387 NaN 1 0 Median 0.81139 0.7008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7744900 5116500 2628400 7456700 4948900 2507800 288180 167580 120610 0 0 0 0 0 0 0 0 0 0 0 0 34814 4049 36595 183180;183181 185536;185537 185537 2 TYVTQTLLK SFPSIFIYGHTASGKTYVTQTLLKTLELPH HTASGKTYVTQTLLKTLELPHVFVNCVECF K T Y L K T 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 3 0 1 1 0 0 9 0 1065.607 O43913;G3V0H0 O43913 44 52 ORC5 Origin recognition complex subunit 5 yes no 2 0.0021041 74.301 By MS/MS By MS/MS By matching By matching 3 1 1 2 1.0857 0.99999 18.987 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0113 1.0109 26.419 3 0 Median 1.3399 1.2065 NaN 1 0 Median 0.9461 0.99999 NaN 1 0 Median 1.1169 0.92757 1.1754 2 0 Median 52073000 24293000 27780000 0 0 0 0 0 0 30769000 15201000 15568000 18623000 7871800 10751000 861510 376310 485200 1819000 844010 974980 34815 1599 36596 183182;183183;183184;183185;183186;183187;183188 185538;185539;185540 185540 3 TYYMSGGLQPVPIVFR FSMQAIDQVINSAAKTYYMSGGLQPVPIVF YYMSGGLQPVPIVFRGPNGASAGVAAQHSQ K T Y F R G 0 1 0 0 0 1 0 2 0 1 1 0 1 1 2 1 1 0 2 2 0 0 16 0 1826.9389 P11177;C9J634;F8WF02 P11177 130 145 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 4.5258E-10 117.67 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 1 1 2 1 0.80441 0.78709 37.072 8 Median 0.76877 0.71975 9.0344 3 1 Median 0.60494 0.50301 NaN 1 0 Median 0.78338 0.75183 NaN 1 0 Median 1.2793 1.0781 28.82 2 0 Median 1.5458 1.6082 NaN 1 0 Median NaN NaN NaN 0 0 Median 109440000 58272000 51172000 84227000 46603000 37624000 23306000 10722000 12584000 867410 500920 366490 443700 184860 258850 600670 261490 339180 0 0 0 34816 1954 36597;36598 183189;183190;183191;183192;183193;183194;183195;183196 185541;185542;185543;185544;185545;185546;185547;185548;185549 185548 734 9 TYYYNNR TAVSEWTEYKTADGKTYYYNNRTLESTWEK EYKTADGKTYYYNNRTLESTWEKPQELKEK K T Y N R T 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 7 0 992.43519 O14776;G3V220 O14776 445 451 TCERG1 Transcription elongation regulator 1 yes no 2 0.052906 51.688 By MS/MS 1 0.90611 0.98519 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90611 0.98519 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1581000 730280 850700 0 0 0 0 0 0 1581000 730280 850700 0 0 0 0 0 0 0 0 0 34817 1494 36599 183197 185550 185550 1 TYYYNTETK GAKSMWTEHKSPDGRTYYYNTETKQSTWEK KSPDGRTYYYNTETKQSTWEKPDDLKTPAE R T Y T K Q 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 3 0 3 0 0 0 9 0 1181.5241 O75400;A0A3F2YNY6;F5H578;H0YG38 O75400 156 164 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.00015253 116.73 By MS/MS By MS/MS By MS/MS 2 1 1 1.0931 0.96902 15.852 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97431 1.0363 22.88 2 1 Median 1.0244 0.87942 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2827 1.0652 NaN 1 0 Median 11076000 5398000 5678300 0 0 0 0 0 0 6649100 3186900 3462200 3379700 1732400 1647300 0 0 0 1047400 478660 568740 34818 1670 36600 183198;183199;183200;183201 185551;185552;185553;185554 185551 4 VAAAGAFAQTLR THAMVNIPEEMLRVKVAAAGAFAQTLRRYT RVKVAAAGAFAQTLRRYTSLNHLAQAARAV K V A L R R 5 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1174.6459 P22670 P22670 738 749 RFX1 MHC class II regulatory factor RFX1 yes yes 2 5.1455E-06 100.48 By matching By MS/MS By matching 1 1 1 0.93447 1.0274 101.77 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93447 1.0274 NaN 1 0 Median 1.0969 0.93404 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.16414 0.1684 NaN 1 0 Median 17265000 9001500 8263500 0 0 0 0 0 0 14781000 7776600 7004600 2098900 909600 1189300 0 0 0 384880 315270 69603 34819 2104 36601 183202;183203;183204 185555;185556 185555 2 VAAALPGMESTQDR TSAKAGYNVKQLFRRVAAALPGMESTQDRS RVAAALPGMESTQDRSREDMIDIKLEKPQE R V A D R S 3 1 0 1 0 1 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 14 0 1444.698 P20340;F5H3K7 P20340 170 183 RAB6A Ras-related protein Rab-6A yes no 2 7.8822E-09 137.89 By MS/MS By MS/MS 1 1 0.93563 0.83911 5.2173 2 Median 0.85042 0.80872 NaN 1 0 Median 1.0294 0.87064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57104000 29275000 27829000 45295000 23607000 21689000 11808000 5667900 6140200 0 0 0 0 0 0 0 0 0 0 0 0 34820 2079 36602 183205;183206 185557;185558;185559;185560;185561 185558 5 VAAAMENPNLR STEEDINKQINDKERVAAAMENPNLREIVE DKERVAAAMENPNLREIVEQCVLEPD____ R V A L R E 3 1 2 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 11 0 1184.5972 Q9H5X1 Q9H5X1 139 149 FAM96A MIP18 family protein FAM96A yes yes 2 0.01162 57.59 By MS/MS 1 1.6595 1.3786 NaN 1 Median NaN NaN NaN 0 0 Median 1.6595 1.3786 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1625900 584350 1041500 0 0 0 1625900 584350 1041500 0 0 0 0 0 0 0 0 0 0 0 0 34821 3971 36603 183207 185562 185562 1 VAAAMPVR TEKTRVALEKSVSQKVAAAMPVRAADKLAP EKSVSQKVAAAMPVRAADKLAPAQYIRYTP K V A V R A 3 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 0 0 8 0 813.45309 Q13573;G3V3A4 Q13573 159 166 SNW1 SNW domain-containing protein 1 yes no 2 0.0096746 60.358 By MS/MS 1 0.86885 0.8709 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86885 0.8709 NaN 1 0 Median NaN NaN NaN 0 0 Median 4567700 2467900 2099800 0 0 0 0 0 0 0 0 0 0 0 0 4567700 2467900 2099800 0 0 0 34822 2826 36604 183208 185563 185563 1 VAAAVDLIIK RVLEALLPLKGLEERVAAAVDLIIKSHQGL GLEERVAAAVDLIIKSHQGLDRQELSFAAR R V A I K S 3 0 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1011.6328 P49327;A0A0U1RQF0 P49327 2397 2406 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.001158 68.016 By MS/MS By MS/MS By matching 2 3 1 1.1853 1.0729 9.8647 6 Median 1.0547 1.0319 2.2591 2 0 Median 1.4012 1.2325 12.089 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2509 1.0979 NaN 1 0 Median 51877000 22751000 29125000 35107000 16158000 18949000 16696000 6563400 10133000 0 0 0 0 0 0 0 0 0 73424 30076 43348 34823 2377 36605 183209;183210;183211;183212;183213;183214 185564;185565;185566;185567;185568;185569 185564 6 VAAAVPVIISR ARIKKIMQTDEEIGKVAAAVPVIISRALEL EIGKVAAAVPVIISRALELFLESLLKKACQ K V A S R A 3 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 3 0 0 11 0 1094.6812 E9PNC7;C9JCC6;Q14919;E9PQX9 E9PNC7 30 40 DRAP1 Dr1-associated corepressor yes no 2 0.00020467 102.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 4 2 2 1.1555 0.98184 13.072 16 Median 1.1652 1.1401 17.589 3 0 Median 1.1219 0.92923 12.771 2 0 Median 0.99773 1.0105 11.059 3 0 Median 1.2898 1.0176 5.5018 4 0 Median 0.84205 0.85089 18.986 2 0 Median 1.1936 0.94503 3.4714 2 0 Median 143860000 69704000 74154000 28797000 13842000 14955000 3167700 1513900 1653800 80928000 41137000 39792000 10821000 4624200 6196700 13956000 5764900 8191100 6187200 2822000 3365200 34824 690 36606 183215;183216;183217;183218;183219;183220;183221;183222;183223;183224;183225;183226;183227;183228;183229;183230 185570;185571;185572;185573;185574;185575;185576;185577;185578;185579;185580;185581;185582;185583;185584;185585 185571 16 VAAENALSVAEEQIR VNELRKLLEEERDQRVAAENALSVAEEQIR VAAENALSVAEEQIRRLEHSEWDSSRTPII R V A I R R 4 1 1 0 0 1 3 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 15 0 1598.8264 Q14789 Q14789 3165 3179 GOLGB1 Golgin subfamily B member 1 yes yes 2;3 9.0983E-14 174.24 By MS/MS By MS/MS By matching 2 2 1 1.1311 1.0556 8.0149 5 Median 1.1037 1.0776 2.9255 2 0 Median 1.2568 1.0782 8.675 2 0 Median NaN NaN NaN 0 0 Median 1.0729 0.93046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36501000 16386000 20115000 32305000 14606000 17700000 3955400 1665800 2289600 0 0 0 240430 114150 126280 0 0 0 0 0 0 34825 2900 36607 183231;183232;183233;183234;183235 185586;185587;185588;185589;185590;185591 185587 6 VAAETQSPSLFGSTK QHGNSGRNSESESNKVAAETQSPSLFGSTK VAAETQSPSLFGSTKLQQESTFLFHGNKTE K V A T K L 2 0 0 0 0 1 1 1 0 0 1 1 0 1 1 3 2 0 0 1 0 0 15 0 1521.7675 Q9UKX7 Q9UKX7 215 229 NUP50 Nuclear pore complex protein Nup50 yes yes 2 3.0893E-09 144.65 By MS/MS By MS/MS By MS/MS 1 1 1 1.1482 0.98476 12.799 3 Median NaN NaN NaN 0 0 Median 1.1981 1.0497 NaN 1 0 Median 0.84803 0.82028 NaN 1 0 Median 1.1482 0.98476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34566000 18084000 16482000 0 0 0 979360 475750 503600 26793000 14397000 12397000 6793300 3211400 3581900 0 0 0 0 0 0 34826 4317 36608 183236;183237;183238 185592;185593;185594;185595;185596 185592 5 VAAGLQIK LSRVLANPGNSQVARVAAGLQIKNSLTSKD GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ R V A I K N 2 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 798.49634 Q14974;J3QR48 Q14974 55 62 KPNB1 Importin subunit beta-1 yes no 2 0.0024257 119.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 3 3 1 2 1.4347 1.4083 22.151 18 Median 1.3972 1.252 22.518 4 0 Median 1.7748 1.5541 9.3195 5 0 Median 1.426 1.4493 34.676 3 0 Median 1.7832 1.5263 25.795 3 0 Plateau 1.4123 1.4559 NaN 1 0 Median 1.6833 1.3873 10.745 2 0 Median 108460000 41845000 66613000 21787000 8736900 13050000 41905000 15830000 26075000 18557000 7943600 10613000 13610000 4648200 8962200 5624300 1979500 3644800 6974400 2706400 4268000 34827 2904 36609 183239;183240;183241;183242;183243;183244;183245;183246;183247;183248;183249;183250;183251;183252;183253;183254;183255;183256 185597;185598;185599;185600;185601;185602;185603;185604;185605;185606;185607 185604 11 VAAGTLDASTK SEILKQKDTEPTNFKVAAGTLDASTKIYAV TNFKVAAGTLDASTKIYAVRVDAVHADVYR K V A T K I 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1032.5451 E9PHA2;Q15003;C9J470 E9PHA2 142 152 NCAPH Condensin complex subunit 2 yes no 2 0.00041805 70.1 By matching By MS/MS By matching 1 1 1 1.1234 0.99474 5.86 3 Plateau 1.0375 1.056 NaN 1 0 Median 1.1234 0.99474 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0804 0.93921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3319200 1482100 1837000 685510 309620 375890 1911500 812790 1098700 0 0 0 722200 359730 362470 0 0 0 0 0 0 34828 929 36610 183257;183258;183259 185608;185609 185609 2 VAAHPILR IFKKTVAMHEVFLCRVAAHPILRRDLNFHV HEVFLCRVAAHPILRRDLNFHVFLEYNQDL R V A L R R 2 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 8 0 875.53412 A0A0A0MRI2;Q9UNH7;G3V5X9 A0A0A0MRI2 163 170 SNX6 Sorting nexin-6;Sorting nexin-6, N-terminally processed yes no 2 0.051366 51.572 By MS/MS 1 1.1418 0.98912 NaN 1 Median NaN NaN NaN 0 0 Median 1.1418 0.98912 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1750500 980780 769680 0 0 0 1750500 980780 769680 0 0 0 0 0 0 0 0 0 0 0 0 34829 161 36611 183260 185610 185610 1 VAAIEALNDGELQK AEITEEMMDQANDKKVAAIEALNDGELQKA KVAAIEALNDGELQKAIDLFTDAIKLNPRL K V A Q K A 3 0 1 1 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1469.7726 P50502;Q3KNR6;H7C3I1;F6VDH7;Q8IZP2 P50502 119 132 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 yes no 2 7.5569E-11 169.58 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 3 1 1.0971 0.97976 13.987 10 Median 0.97363 0.89907 18.21 2 0 Median 1.3154 1.1194 16.963 2 0 Median 0.96771 0.94266 3.583 2 1 Median 1.2813 1.1571 10.93 3 0 Median 0.93763 0.8947 NaN 1 0 Median NaN NaN NaN 0 0 Median 326900000 150300000 176610000 150180000 69289000 80896000 40768000 17640000 23128000 70507000 34987000 35520000 55658000 24109000 31549000 9782800 4270100 5512700 0 0 0 34830 2415 36612 183261;183262;183263;183264;183265;183266;183267;183268;183269;183270 185611;185612;185613;185614;185615;185616;185617;185618;185619;185620;185621 185621 11 VAAIQQILGK KASELNPESIYSVFKVAAIQQILGKYKEAV YSVFKVAAIQQILGKYKEAVAQYQMIIKKK K V A G K Y 2 0 0 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1039.639 Q6PGP7;D6RCE2 Q6PGP7 638 647 TTC37 Tetratricopeptide repeat protein 37 yes no 2 0.00079272 112.17 By MS/MS By MS/MS 1 1 0.94766 0.87475 23.716 2 Median 0.76639 0.73969 NaN 1 1 Median 1.1718 1.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16422000 11522000 4899700 14502000 10692000 3809600 1919500 829440 1090100 0 0 0 0 0 0 0 0 0 0 0 0 34831 3169 36613 183271;183272 185622;185623 185622 2 VAAISLATR GISRQGIIAVTQPRRVAAISLATRVSDEKR VTQPRRVAAISLATRVSDEKRTELGKLVGY R V A T R V 3 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 900.53927 Q9H6R0 Q9H6R0 130 138 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.015183 43.808 By MS/MS 1 1.2344 1.3044 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2344 1.3044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1639600 813450 826140 0 0 0 0 0 0 1639600 813450 826140 0 0 0 0 0 0 0 0 0 34832 3975 36614 183273 185624 185624 1 VAAKNALESYTYNIK EAERYKSEDEANRDRVAAKNALESYTYNIK VAAKNALESYTYNIKQTVEDEKLRGKISEQ R V A I K Q 3 0 2 0 0 0 1 0 0 1 1 2 0 0 0 1 1 0 2 1 0 0 15 1 1683.8832 P54652 P54652 539 553 HSPA2 Heat shock-related 70 kDa protein 2 yes yes 2 0.0011188 63.694 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34833 2483 36615 183274 185625 185625 1 VAALQNLVK QVVCEATQCPDTRVRVAALQNLVKIMSLYY PDTRVRVAALQNLVKIMSLYYQYMETYMGP R V A V K I 2 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 954.58622 Q14974;J3KTM9 Q14974 235 243 KPNB1 Importin subunit beta-1 yes no 2 0.00041521 131.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 5 4 4 1.2778 1.1663 26.356 23 Median 1.163 1.1215 7.3097 3 0 Median 1.3413 1.1748 18.543 3 0 Median 1.128 1.179 10.205 4 0 Median 1.3159 1.138 48.789 5 0 Median 1.4262 1.4237 7.1321 4 0 Median 1.3986 1.1657 8.8036 4 0 Median 230520000 101420000 129100000 69859000 31279000 38580000 44468000 18675000 25794000 72869000 32708000 40161000 19039000 8167600 10872000 16638000 7389100 9248500 7644400 3199800 4444600 34834 2904 36616 183275;183276;183277;183278;183279;183280;183281;183282;183283;183284;183285;183286;183287;183288;183289;183290;183291;183292;183293;183294;183295;183296;183297 185626;185627;185628;185629;185630;185631;185632;185633;185634;185635;185636;185637;185638;185639;185640;185641;185642;185643 185629 18 VAALQTAADAFYK HIRASYAAEERIEGRVAALQTAADAFYKAK GRVAALQTAADAFYKAKNEFAAKATEDQMR R V A Y K A 5 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 13 0 1367.7085 Q9H269 Q9H269 648 660 VPS16 Vacuolar protein sorting-associated protein 16 homolog yes yes 2 0.0010049 75.294 By MS/MS By MS/MS 1 1 1.0965 1.1135 3.3054 2 Median 1.1843 1.1398 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0152 1.0878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5712400 2408300 3304100 3464400 1326700 2137700 0 0 0 2248000 1081600 1166400 0 0 0 0 0 0 0 0 0 34835 3940 36617 183298;183299 185644;185645 185644 2 VAALTGLPFVTAPNK GLNTRIGFAEKVAAKVAALTGLPFVTAPNK VAALTGLPFVTAPNKFEALAAHDALVELSG K V A N K F 3 0 1 0 0 0 0 1 0 0 2 1 0 1 2 0 2 0 0 2 0 0 15 0 1497.8555 P07954 P07954 297 311 FH Fumarate hydratase, mitochondrial yes yes 2 0.0045311 35.959 By MS/MS 1 0.81989 0.80882 NaN 1 Median 0.81989 0.80882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 468240 272370 195870 468240 272370 195870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34836 1896 36618 183300 185646 185646 1 VAAMSVAQR LPGPKRGVACTQPRRVAAMSVAQRVADEMD CTQPRRVAAMSVAQRVADEMDVMLGQEVGY R V A Q R V 3 1 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 9 0 931.49094 O43143 O43143 196 204 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00047919 121.99 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1 1.1831 1.0794 9.4027 7 Median 1.2732 1.2418 NaN 1 0 Median 1.2488 1.0794 NaN 1 0 Median 1.1831 1.269 NaN 1 0 Median 1.2696 1.0927 NaN 1 0 Median 1.0317 1.0757 0.085858 2 0 Median 1.181 0.96521 NaN 1 0 Median 25849000 11600000 14249000 2987700 1328100 1659600 11382000 5063200 6318600 1514300 635700 878620 1135800 491400 644370 7977400 3745000 4232400 852050 336940 515110 34837 1553 36619 183301;183302;183303;183304;183305;183306;183307 185647;185648;185649;185650;185651;185652;185653;185654 185652 6 VAAPDVVVPTLDTVR PWQAKVPQIEVETHKVAAPDVVVPTLDTVR VAAPDVVVPTLDTVRHEALLYTWLAEHKPL K V A V R H 2 1 0 2 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 5 0 0 15 0 1550.8668 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2562 2576 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 2.5142E-09 132.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 3 1 1 0.8904 0.78076 25.938 14 Median 0.89974 0.87453 35.242 4 2 Median 0.74861 0.62394 17.981 2 0 Median 0.79648 0.82303 24.478 3 1 Median 0.93222 0.81296 17.926 3 0 Median 1.0501 1.102 NaN 1 0 Median 0.89718 0.74983 NaN 1 0 Median 324960000 173110000 151850000 100510000 56269000 44243000 16439000 8664600 7774000 188710000 98878000 89830000 14082000 7083500 6998700 4015800 1670000 2345800 1198400 540900 657540 34838 2865 36620 183308;183309;183310;183311;183312;183313;183314;183315;183316;183317;183318;183319;183320;183321 185655;185656;185657;185658;185659;185660;185661;185662;185663;185664;185665;185666;185667;185668;185669;185670;185671;185672;185673 185671 19 VAAPEIVSGVSGESEQK LAHAIAGELDLPILKVAAPEIVSGVSGESE APEIVSGVSGESEQKLRELFEQAVSNAPCI K V A Q K L 2 0 0 0 0 1 3 2 0 1 0 1 0 0 1 3 0 0 0 3 0 0 17 0 1685.8472 O15381 O15381 329 345 NVL Nuclear valosin-containing protein-like yes yes 2 8.1993E-11 107.17 By MS/MS By matching 1 1 0.76693 0.70984 9.1142 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64816 0.66554 NaN 1 0 Median 0.90747 0.75709 NaN 1 0 Median 7901600 4498100 3403500 0 0 0 0 0 0 0 0 0 0 0 0 7250200 4157100 3093100 651380 340960 310420 34839 1542 36621 183322;183323 185674;185675 185675 2 VAAQCSHAAVSAYK MILVVRNDLKMGKGKVAAQCSHAAVSAYKQ KVAAQCSHAAVSAYKQIQRRNPEMLKQWEY K V A Y K Q 5 0 0 0 1 1 0 0 1 0 0 1 0 0 0 2 0 0 1 2 0 0 14 0 1461.7034 J3KQ48;Q9Y3E5 J3KQ48 83 96 PTRH2 Peptidyl-tRNA hydrolase 2, mitochondrial yes no 3 0.0034769 32.275 By matching By MS/MS 1 1 1.2282 1.1131 0.46528 2 Median 1.1748 1.1094 NaN 1 0 Median 1.284 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1228800 555270 673510 148130 63022 85111 1080600 492250 588400 0 0 0 0 0 0 0 0 0 0 0 0 34840 1317 36622 183324;183325 185676 185676 1 VAAQNLIQNTNIDNGQK MLIPQLKESLQTLMKVAAQNLIQNTNIDNG AQNLIQNTNIDNGQKSSDGPIQRFDKCLEE K V A Q K S 2 0 4 1 0 3 0 1 0 2 1 1 0 0 0 0 1 0 0 1 0 0 17 0 1839.9439 B4DUA7;M0R3F3;Q9NX70 B4DUA7 98 114 IXL;MED29 Mediator of RNA polymerase II transcription subunit 29 yes no 2 5.7917E-07 87.363 By matching By MS/MS 1 1 1.0686 1.009 6.3868 2 Median 1.1196 1.0556 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0199 0.96448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11036000 5027900 6008500 6256200 2695500 3560700 0 0 0 4780200 2332400 2447800 0 0 0 0 0 0 0 0 0 34841 603 36623 183326;183327 185677 185677 1 VAASEEQEFAEGFVK LVTTTPTSSQFLYPKVAASEEQEFAEGFVK VAASEEQEFAEGFVKALEDLHKQNQLGAGA K V A V K A 3 0 0 0 0 1 4 1 0 0 0 1 0 2 0 1 0 0 0 2 0 0 15 0 1639.773 P17535 P17535 128 142 JUND Transcription factor jun-D yes yes 2 9.726E-05 80.763 By MS/MS By matching 2 1 0.73074 0.75299 58.953 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45571 0.45298 72.313 2 1 Median 0.89302 0.75299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13610000 8009200 5600600 0 0 0 0 0 0 13262000 7831300 5430400 348170 177940 170230 0 0 0 0 0 0 34842 2041 36624 183328;183329;183330 185678;185679;185680 185679 3 VAASIGNAQK NKPSGFRSVKAPVTKVAASIGNAQKLPMCD APVTKVAASIGNAQKLPMCDKCGTGIVGVF K V A Q K L 3 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 10 0 957.52434 O00151 O00151 247 256 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 0.00057108 73.248 By matching By MS/MS 1 2 1.5196 1.3105 23.588 3 Median 1.1418 1.1187 NaN 1 0 Median 1.7895 1.527 21.623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2580500 1031300 1549200 467910 208970 258940 2112500 822290 1290200 0 0 0 0 0 0 0 0 0 0 0 0 34843 1442 36625 183331;183332;183333 185681;185682 185681 2 VAASNIVQMK IGIQGPDYVLVASDRVAASNIVQMKDDHDK VASDRVAASNIVQMKDDHDKMFKMSEKILL R V A M K D 2 0 1 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 0 2 0 0 10 0 1059.5747 P49721 P49721 20 29 PSMB2 Proteasome subunit beta type-2 yes yes 2 0.00032996 124.98 By MS/MS By MS/MS By matching 2 3 1 1.1965 1.0505 6.4929 6 Median 1.126 1.0118 6.3629 2 0 Median 1.2188 1.0427 5.2809 3 1 Median 1.224 1.1471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83224000 37310000 45914000 49873000 23012000 26862000 21776000 9455600 12321000 11574000 4842800 6731600 0 0 0 0 0 0 0 0 0 34844 2392 36626 183334;183335;183336;183337;183338;183339 185683;185684;185685;185686;185687;185688 185683 6 VAASNIVQMKDDHDK IGIQGPDYVLVASDRVAASNIVQMKDDHDK VAASNIVQMKDDHDKMFKMSEKILLLCVGE R V A D K M 2 0 1 3 0 1 0 0 1 1 0 2 1 0 0 1 0 0 0 2 0 0 15 1 1669.8094 P49721 P49721 20 34 PSMB2 Proteasome subunit beta type-2 yes yes 3;4 4.2767E-06 85.837 By MS/MS By MS/MS 2 4 1.1603 1.1195 6.994 6 Median 1.0816 1.1001 5.7157 2 0 Median 1.2471 1.1221 8.4036 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23013000 10566000 12447000 17558000 8016100 9542200 5454900 2549800 2905100 0 0 0 0 0 0 0 0 0 0 0 0 34845 2392 36627 183340;183341;183342;183343;183344;183345 185689;185690;185691;185692;185693;185694;185695;185696;185697;185698 185693 10 VAASNIVQMKDDHDKMFK IGIQGPDYVLVASDRVAASNIVQMKDDHDK SNIVQMKDDHDKMFKMSEKILLLCVGEAGD R V A F K M 2 0 1 3 0 1 0 0 1 1 0 3 2 1 0 1 0 0 0 2 0 0 18 2 2076.0132 P49721 P49721 20 37 PSMB2 Proteasome subunit beta type-2 yes yes 4 1.6874E-06 65.716 By MS/MS 1 0.93187 0.98413 NaN 1 Median 0.93187 0.98413 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49571000 21838000 27733000 49571000 21838000 27733000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34846 2392 36628 183346 185699 185699 1 VAASVLNPYVK EKELLRVAQILKEPKVAASVLNPYVKRSIK KEPKVAASVLNPYVKRSIKVKSLNDITAKE K V A V K R 2 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 3 0 0 11 0 1159.6601 P48047;A0A494C0K9;H7C0C1 P48047 74 84 ATP5O ATP synthase subunit O, mitochondrial yes no 2 0.00012337 120.15 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 1.2078 1.0292 21.856 9 Median 0.91067 0.83794 8.7705 3 0 Median 1.2442 1.0326 5.4464 3 0 Median 0.99435 0.93215 NaN 1 0 Median 1.7119 1.4174 0.4823 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 208240000 102360000 105890000 156670000 79025000 77645000 29712000 12868000 16844000 17625000 8873700 8751000 4237200 1589400 2647700 0 0 0 0 0 0 34847 2358 36629 183347;183348;183349;183350;183351;183352;183353;183354;183355 185700;185701;185702;185703;185704;185705;185706;185707;185708;185709;185710;185711;185712;185713;185714 185700 15 VAATSVITIVK RGPLAAGLGPLVPGKVAATSVITIVKSKTD VPGKVAATSVITIVKSKTDARS________ K V A V K S 2 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 2 0 0 3 0 0 11 0 1100.6805 O15525 O15525 145 155 MAFG Transcription factor MafG yes yes 2 0.0023898 53.756 By matching By matching By MS/MS 1 1 1 1.0645 1.0756 12.145 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98891 0.94428 NaN 1 0 Median 1.3028 1.0756 NaN 1 0 Median 1.0645 1.2036 NaN 1 0 Median NaN NaN NaN 0 0 Median 8163000 3937300 4225700 0 0 0 0 0 0 3072800 1468500 1604200 989190 420190 569010 4101000 2048600 2052400 0 0 0 34848 1552 36630 183356;183357;183358 185715;185716 185715 2 VAAWVEALR ______________________________ LSQNPRVAAWVEALRCDGETDKHWRHRRDF R V A L R C 3 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 9 0 1013.5658 Q9NXV6;J3KNE1;D6RGD2 Q9NXV6 15 23 CDKN2AIP CDKN2A-interacting protein yes no 2 0.0028118 69.423 By matching By matching By MS/MS 1 1 1 0.59002 0.553 27.396 3 Median 0.86755 0.87733 NaN 1 0 Median 0.59002 0.553 NaN 1 0 Median 0.52839 0.53935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11722000 6533300 5189000 2031300 1066400 964890 469720 262240 207480 9221300 5204700 4016700 0 0 0 0 0 0 0 0 0 34849 4169 36631 183359;183360;183361 185717;185718 185718 2 VAAYDKLEK LQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ QRHEEKVAAYDKLEKTKTRLQQELDDLLVD K V A E K T 2 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1035.5601 P35579 P35579 1405 1413 MYH9 Myosin-9 yes yes 2 0.015228 66.621 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.98282 1.005 17.417 5 Median 0.93967 0.90525 NaN 1 0 Median 1.0519 1.005 NaN 1 0 Median 1.1572 1.3316 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98282 1.0563 NaN 1 0 Median 0.94881 0.84669 NaN 1 0 Median 41364000 19460000 21903000 12146000 5625200 6520400 15527000 7449300 8077900 3136900 1345200 1791600 0 0 0 6654600 3194700 3459900 3899300 1845800 2053500 34850 2244 36632 183362;183363;183364;183365;183366 185719;185720;185721;185722;185723;185724 185720 6 VACAEEWQESR TDALRCVNNYQGMLKVACAEEWQESRTEGE GMLKVACAEEWQESRTEGEHSKEVIKPYDW K V A S R T 2 1 0 0 1 1 3 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 11 0 1363.5827 O75663 O75663 85 95 TIPRL TIP41-like protein yes yes 2 0.0020677 78.655 By MS/MS 1 2.3234 1.9332 NaN 1 Median NaN NaN NaN 0 0 Median 2.3234 1.9332 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6412000 2133600 4278300 0 0 0 6412000 2133600 4278300 0 0 0 0 0 0 0 0 0 0 0 0 34851 1689 36633 183367 185725 185725 1 VACIGAWHPAR HTKKLPRKTHRGLRKVACIGAWHPARVAFS GLRKVACIGAWHPARVAFSVARAGQKGYHH K V A A R V 3 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 1 0 0 11 0 1236.6186 P39023;G5E9G0;H7C422;B5MCW2;Q92901 P39023 251 261 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 2;3 0.00065578 53.597 By matching By MS/MS 2 6 0.99002 0.86882 8.2999 8 Median 0.89273 0.8942 4.523 2 0 Median 1.0474 0.85138 9.4716 6 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158800000 77139000 81657000 7439700 3793900 3645800 151360000 73345000 78011000 0 0 0 0 0 0 0 0 0 0 0 0 34852 2281 36634 183368;183369;183370;183371;183372;183373;183374;183375 185726;185727;185728 185726 2 VACITEQVLTLVNK DFSITKDPAAEARMKVACITEQVLTLVNKR KVACITEQVLTLVNKRIGLYRHFDETVNRY K V A N K R 1 0 1 0 1 1 1 0 0 1 2 1 0 0 0 0 2 0 0 3 0 0 14 0 1586.8702 P04843;B7Z4L4 P04843 475 488 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2 0.048976 24.382 By MS/MS 1 1.0014 0.8655 NaN 1 Median NaN NaN NaN 0 0 Median 1.0014 0.8655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1706400 798790 907570 0 0 0 1706400 798790 907570 0 0 0 0 0 0 0 0 0 0 0 0 34853 1853 36635 183376 185729 185729 1 VACQVNDNTNTAGSPGEVLSR IDKQHTDTVVNFLIRVACQVNDNTNTAGSP DNTNTAGSPGEVLSRRCVNLLKTALRPDMW R V A S R R 2 1 3 1 1 1 1 2 0 0 1 0 0 0 1 2 2 0 0 3 0 0 21 0 2188.0179 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2085 2105 TRRAP Transformation/transcription domain-associated protein yes no 3 0.0003315 28.505 By MS/MS 1 0.92178 1.0087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92178 1.0087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3224500 1956200 1268300 0 0 0 0 0 0 3224500 1956200 1268300 0 0 0 0 0 0 0 0 0 34854 991 36636 183377 185730 185730 1 VADFTEQYNEQYGAVR EGHWSKECPVDRTGRVADFTEQYNEQYGAV ADFTEQYNEQYGAVRTPYTMGYGESMYYND R V A V R T 2 1 1 1 0 2 2 1 0 0 0 0 0 1 0 0 1 0 2 2 0 0 16 0 1888.8592 Q9BQ04 Q9BQ04 183 198 RBM4B RNA-binding protein 4B yes yes 2 3.6407E-10 134.75 By matching By matching By MS/MS By matching By MS/MS 1 1 2 1 1 0.9894 0.97165 3.8279 6 Median 0.95825 0.96383 NaN 1 0 Median 1.0932 0.97954 NaN 1 0 Median 0.94195 0.97501 4.0402 2 0 Median 1.1673 1.0024 NaN 1 0 Median 0.89586 0.90711 NaN 1 0 Median NaN NaN NaN 0 0 Median 29750000 15722000 14027000 2214500 1101500 1113000 190150 101380 88776 15605000 8257200 7347500 467030 221790 245240 11273000 6040300 5233000 0 0 0 34855 3780 36637 183378;183379;183380;183381;183382;183383 185731;185732;185733;185734 185734 4 VADGGGAGGTFQPYLDTLR ______________________________ GGAGGTFQPYLDTLRQELQQTDPTLLSVVV R V A L R Q 2 1 0 2 0 1 0 5 0 0 2 0 0 1 1 0 2 0 1 1 0 0 19 0 1893.9221 Q9Y5M8;C9J5Z8 Q9Y5M8 9 27 SRPRB Signal recognition particle receptor subunit beta yes no 2 6.8234E-13 100.55 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 1 1.1454 0.98955 12.407 7 Median 1.1989 1.1194 NaN 1 0 Median 1.0944 0.93406 8.162 2 0 Median 1.091 1.0473 NaN 1 0 Median 1.1368 0.94754 1.5422 2 0 Median 1.2997 1.2751 NaN 1 0 Median NaN NaN NaN 0 0 Median 17800000 8072300 9727700 7907800 3554800 4353000 395460 154660 240800 6594100 2976000 3618100 1087000 511930 575050 1815700 874900 940790 0 0 0 34856 4463 36638 183384;183385;183386;183387;183388;183389;183390 185735;185736;185737;185738;185739;185740 185736 6 VADGLPLAASMQEDEQSGR ______________________________ LPLAASMQEDEQSGRDLQQYQSQAKQLFRK R V A G R D 3 1 0 2 0 2 2 2 0 0 2 0 1 0 1 2 0 0 0 1 0 0 19 0 1972.916 O75396 O75396 10 28 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.00016782 39.661 By MS/MS By MS/MS By matching 1 1 1 1.0758 1.0222 11.012 3 Median 0.92695 0.87505 NaN 1 0 Median 1.2735 1.0826 NaN 1 0 Median 1.0758 1.0222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9874700 5133200 4741500 5397200 3004600 2392600 1476400 680680 795720 3001100 1447900 1553200 0 0 0 0 0 0 0 0 0 34857 1669 36639 183391;183392;183393 185741;185742;185743 185741 3 VADIGLAAWGR ______________________________ LPYKVADIGLAAWGRKALDIAENEMPGLMR K V A G R K 3 1 0 1 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 1 0 0 11 0 1127.6087 P23526 P23526 9 19 AHCY Adenosylhomocysteinase yes yes 2 2.2612E-13 131.06 By MS/MS By MS/MS By MS/MS By MS/MS 9 5 2 2 1.3564 1.2253 10.696 16 Median 1.215 1.18 14.423 7 1 Median 1.4381 1.204 3.1402 5 0 Median 1.3001 1.3435 5.4823 2 0 Median 1.436 1.2355 15.059 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 210670000 81772000 128900000 152470000 57288000 95184000 40600000 17001000 23599000 15777000 6808600 8968700 1820900 674640 1146200 0 0 0 0 0 0 34858 2116 36640 183394;183395;183396;183397;183398;183399;183400;183401;183402;183403;183404;183405;183406;183407;183408;183409;183410;183411 185744;185745;185746;185747;185748;185749;185750;185751;185752;185753;185754;185755;185756;185757;185758;185759;185760;185761;185762;185763;185764 185748 20 VADKIQLINNMLDK ESPERPFLAILGGAKVADKIQLINNMLDKV KVADKIQLINNMLDKVNEMIIGGGMAFTFL K V A D K V 1 0 2 2 0 1 0 0 0 2 2 2 1 0 0 0 0 0 0 1 0 0 14 1 1613.8811 P00558 P00558 217 230 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 1.3009E-14 140.24 By MS/MS By matching By MS/MS By matching 5 2 2 1 1.1919 1.1608 10.512 10 Median 1.1637 1.0774 11.025 5 2 Median 1.2647 1.1658 1.4982 2 0 Median 1.0267 1.0981 8.7372 2 0 Median 1.4659 1.3924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96029000 44079000 51950000 65377000 29853000 35525000 20256000 8535500 11721000 9970100 5465700 4504400 425060 225080 199990 0 0 0 0 0 0 34859 1824 36641 183412;183413;183414;183415;183416;183417;183418;183419;183420;183421 185765;185766;185767;185768;185769;185770;185771;185772 185769 8 VADLTEQYNEQYGAVR EGHWSKECPIDRSGRVADLTEQYNEQYGAV ADLTEQYNEQYGAVRTPYTMSYGDSLYYNN R V A V R T 2 1 1 1 0 2 2 1 0 0 1 0 0 0 0 0 1 0 2 2 0 0 16 0 1854.8748 Q9BWF3 Q9BWF3 183 198 RBM4 RNA-binding protein 4 yes yes 2 1.5449E-38 206.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 4 3 3 2 1.0791 1.0381 19.693 15 Median 1.0781 1.0783 NaN 1 0 Median 1.3791 1.1719 31.081 3 0 Median 1.0928 1.207 12.494 3 0 Median 1.0791 0.90743 2.6932 3 0 Median 1.1273 1.132 10.683 3 0 Median 1.0137 0.83607 2.2959 2 0 Median 313910000 158550000 155360000 24178000 10956000 13222000 7361400 3291800 4069600 223440000 117430000 106010000 15112000 7078800 8032800 39652000 17587000 22065000 4164000 2208800 1955200 34860 3870 36642 183422;183423;183424;183425;183426;183427;183428;183429;183430;183431;183432;183433;183434;183435;183436;183437 185773;185774;185775;185776;185777;185778;185779;185780;185781;185782;185783;185784;185785;185786;185787;185788;185789;185790;185791;185792;185793 185776 21 VADMALHYANK AIADTGANVVVTGGKVADMALHYANKYNIM TGGKVADMALHYANKYNIMLVRLNSKWDLR K V A N K Y 3 0 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1231.6019 P50990;H7C4C8 P50990 297 307 CCT8 T-complex protein 1 subunit theta yes no 2;3 0.00011715 143.7 By MS/MS By MS/MS By matching By MS/MS 7 4 2 2 1.2568 1.1246 18.305 15 Median 1.2844 1.1942 22.196 7 0 Median 1.2387 1.0489 13.112 4 0 Median 1.1391 1.1402 8.8308 2 0 Median 1.2976 1.1133 3.4895 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 187840000 77297000 110550000 133850000 54380000 79471000 34398000 15230000 19167000 10838000 4270300 6567500 8756800 3416700 5340000 0 0 0 0 0 0 34861 2423 36643 183438;183439;183440;183441;183442;183443;183444;183445;183446;183447;183448;183449;183450;183451;183452 185794;185795;185796;185797;185798;185799;185800;185801;185802;185803;185804;185805;185806;185807;185808 185803 15 VADNAQQQYVR QSTLEASLELRGLARVADNAQQQYVRSRPA GLARVADNAQQQYVRSRPAPSPESIKRAKE R V A V R S 2 1 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.6317 Q8TDD1 Q8TDD1 511 521 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.0036624 49.418 By MS/MS By MS/MS By MS/MS 1 1 2 1.178 1.1008 21.886 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85064 0.90915 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1614 1.2336 NaN 1 0 Median 1.4298 1.2016 28.491 2 0 Median 4547000 2116400 2430600 0 0 0 0 0 0 1150400 583340 567070 0 0 0 2176000 1007600 1168500 1220600 525540 695040 34862 3470 36644 183453;183454;183455;183456 185809;185810;185811 185811 3 VADNSFDAK PFRRVREEEIEVDSRVADNSFDAKRGAAGD IEVDSRVADNSFDAKRGAAGDWGERANQVL R V A A K R 2 0 1 2 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 965.44543 A0A0A0MRM9;Q14978 A0A0A0MRM9 648 656 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2 0.0084827 50.04 By MS/MS By matching By MS/MS 1 1 2 1.075 1.0317 10.883 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96945 1.0101 NaN 1 0 Median 1.2436 1.0537 NaN 1 0 Median 1.0125 1.0091 18.48 2 0 Median NaN NaN NaN 0 0 Median 4134500 1966000 2168500 0 0 0 0 0 0 1352300 649820 702450 74550 34572 39978 2707700 1281600 1426100 0 0 0 34863 165 36645 183457;183458;183459;183460 185812;185813 185812 2 VADPDHDHTGFLTEYVATR NTTCDLKICDFGLARVADPDHDHTGFLTEY DHDHTGFLTEYVATRWYRAPEIMLNSKGYT R V A T R W 2 1 0 3 0 0 1 1 2 0 1 0 0 1 1 0 3 0 1 2 0 0 19 0 2142.997 P28482 P28482 173 191 MAPK1 Mitogen-activated protein kinase 1 yes yes 3 4.4032E-10 89.846 By matching By MS/MS 1 2 0.88849 0.9608 12.726 3 Median NaN NaN NaN 0 0 Median 0.88849 0.77303 NaN 1 0 Median 0.92985 0.9636 0.41258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28268000 13009000 15259000 0 0 0 5550000 2056800 3493200 22718000 10952000 11766000 0 0 0 0 0 0 0 0 0 34864 2166 36646 183461;183462;183463 185814;185815;185816;185817 185814 4 VADPTPFHIQAEVTMK GGLDVLVNNAGIAFKVADPTPFHIQAEVTM ADPTPFHIQAEVTMKTNFFGTRDVCTELLP K V A M K T 2 0 0 1 0 1 1 0 1 1 0 1 1 1 2 0 2 0 0 2 0 0 16 0 1782.8975 P16152;E9PQ63;A8MTM1 P16152 97 112 CBR1 Carbonyl reductase [NADPH] 1 yes no 2 0.032329 24.291 By MS/MS 1 1.039 0.96234 NaN 1 Median 1.039 0.96234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10340000 5249600 5090600 10340000 5249600 5090600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34865 2025 36647 183464 185818 185818 1 VADWTGATYQDK DMPYQPFSKGDRLGKVADWTGATYQDKRYT LGKVADWTGATYQDKRYTNKYSSQFGGGSQ K V A D K R 2 0 0 2 0 1 0 1 0 0 0 1 0 0 0 0 2 1 1 1 0 0 12 0 1353.6201 O15371;B0QYA5;B0QYA6;B0QYA8 O15371 42 53 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.00016495 86.898 By matching By MS/MS By MS/MS 1 1 1 1.1011 1.0537 10.084 3 Plateau 1.0199 0.97447 NaN 1 0 Median 1.3478 1.1393 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1011 0.94358 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12852000 5469300 7382500 5567200 2311600 3255600 6053800 2529200 3524600 0 0 0 1230700 628490 602210 0 0 0 0 0 0 34866 1540 36648 183465;183466;183467 185819;185820;185821 185819 3 VADWTGATYQDKR DMPYQPFSKGDRLGKVADWTGATYQDKRYT GKVADWTGATYQDKRYTNKYSSQFGGGSQY K V A K R Y 2 1 0 2 0 1 0 1 0 0 0 1 0 0 0 0 2 1 1 1 0 0 13 1 1509.7212 O15371;B0QYA5;B0QYA6;B0QYA8 O15371 42 54 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2;3 1.4605E-06 164.64 By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 1.1652 1.0479 27.894 8 Median 1.0973 1.0991 9.1227 2 0 Median 0.98487 0.88278 19.409 4 3 Median 1.2419 1.3804 NaN 1 0 Median 1.8498 1.6961 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99208000 47697000 51512000 51039000 25512000 25528000 43417000 20723000 22694000 1572700 569490 1003200 3179300 892770 2286500 0 0 0 0 0 0 34867 1540 36649 183468;183469;183470;183471;183472;183473;183474;183475 185822;185823;185824;185825;185826;185827;185828;185829;185830 185825 9 VAEAAIQIFR TYESLLQCLRMEDDKVAEAAIQIFRNTGHK MEDDKVAEAAIQIFRNTGHKIETDLPQIRS K V A F R N 3 1 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1116.6291 Q29RF7 Q29RF7 694 703 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.00071486 105.57 By matching By MS/MS By MS/MS 1 1 1 0.93739 0.82601 39.916 3 Median NaN NaN NaN 0 0 Median 0.93739 0.82601 NaN 1 0 Median 0.45252 0.49644 NaN 1 0 Median 1.2809 1.0907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6225400 3549900 2675500 0 0 0 1389200 737740 651420 2685600 1868600 817050 2150600 943580 1207000 0 0 0 0 0 0 34868 3003 36650 183476;183477;183478 185831;185832 185831 2 VAEAALQIFK TFESLLACLKMDDEKVAEAALQIFKNTGSK MDDEKVAEAALQIFKNTGSKIEEDFPHIRS K V A F K N 3 0 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1088.623 Q9NTI5 Q9NTI5 684 693 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00035707 83.265 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 1 3 1.2145 1.0887 11.89 10 Median 0.97755 0.93297 NaN 1 0 Median 1.3604 1.1942 NaN 1 0 Median 1.012 1.0662 20.244 2 0 Median 1.2616 1.1055 3.6137 2 0 Median 0.90207 0.9439 NaN 1 0 Median 1.276 1.0998 13.594 3 0 Median 23595000 11856000 11739000 702690 313020 389660 246240 106150 140090 11982000 6254100 5728100 1609400 669750 939620 7699100 3956700 3742400 1355800 556760 799070 34869 4107 36651 183479;183480;183481;183482;183483;183484;183485;183486;183487;183488 185833;185834 185834 2 VAEAHENIIHGSGATGK GWLKPVIGSQYPLEKVAEAHENIIHGSGAT EAHENIIHGSGATGKMILLL__________ K V A G K M 3 0 1 0 0 0 2 3 2 2 0 1 0 0 0 1 1 0 0 1 0 0 17 0 1689.8434 Q08257 Q08257 308 324 CRYZ Quinone oxidoreductase yes yes 3;4 0.0012673 31.111 By MS/MS By MS/MS By matching 2 2 1 0.99264 0.97027 12.168 5 Median 0.89557 0.8807 12.912 2 0 Median 1.2434 1.0508 10.642 2 0 Median 0.99264 0.97027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6012900 2922700 3090200 2559000 1303400 1255500 2843600 1261700 1581900 610260 357570 252690 0 0 0 0 0 0 0 0 0 34870 2737 36652 183489;183490;183491;183492;183493 185835;185836;185837;185838;185839;185840 185840 6 VAEAHVPNFIFDEFR LFLEDYVRYTKLPRRVAEAHVPNFIFDEFR VAEAHVPNFIFDEFRTVL____________ R V A F R T 2 1 1 1 0 0 2 0 1 1 0 0 0 3 1 0 0 0 0 2 0 0 15 0 1789.8788 Q12768;E7EQI7 Q12768 1142 1156 KIAA0196 WASH complex subunit strumpellin yes no 3 0.057207 10.854 By matching By MS/MS 1 1 0.76226 0.79223 16.402 2 Median 0.69722 0.70548 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83337 0.88965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1403500 869330 534140 942570 576750 365830 0 0 0 460890 292580 168310 0 0 0 0 0 0 0 0 0 34871 878 36653 183494;183495 185841 185841 1 VAEAVATFLIR LPQCGHAVHEDAPDKVAEAVATFLIRHRFA APDKVAEAVATFLIRHRFAEPIGGFQCVFP K V A I R H 3 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1188.6867 Q9Y570 Q9Y570 359 369 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.0020665 55.549 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.125 1.0583 19.066 6 Median 1.125 1.1458 4.7135 2 0 Median 1.1821 1.0633 7.9808 2 0 Median 0.93097 1.0106 NaN 1 0 Median 0.79665 0.69841 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26272000 11592000 14680000 17843000 7855900 9986900 6212700 2749700 3463000 1996200 903130 1093100 220230 83152 137080 0 0 0 0 0 0 34872 4453 36654 183496;183497;183498;183499;183500;183501 185842;185843 185842 2 VAECKALALECER AKQDRLKLQNELAHKVAECKALALECERVK HKVAECKALALECERVKEDSDEQIKQLEDA K V A E R V 3 1 0 0 2 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 13 1 1547.7436 F5H2B9;H0YNH8;Q9BZF9;H0YN48 F5H2B9 362 374 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats yes no 3 0.039856 18.823 By MS/MS 1 1.0908 0.96558 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0908 0.96558 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2854300 1246500 1607700 0 0 0 0 0 0 0 0 0 2854300 1246500 1607700 0 0 0 0 0 0 34873 1026 36655 183502 185844;185845 185845 2 VAEDEAEAAAAAK MSLAGAEKNGLVKIKVAEDEAEAAAAAKFT IKVAEDEAEAAAAAKFTGLSKEELLKVAGS K V A A K F 7 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 13 0 1244.5885 F5GZS6;J3KPF3;P08195;H0YFS2;F5H0E2;F5H867 F5GZS6 117 129 SLC3A2 4F2 cell-surface antigen heavy chain yes no 2 4.4454E-07 108.47 By MS/MS By MS/MS 1 2 0.72847 0.62333 8.8233 2 Median NaN NaN NaN 0 0 Median 0.72847 0.62333 8.8233 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17633000 9481300 8151800 0 0 0 17633000 9481300 8151800 0 0 0 0 0 0 0 0 0 0 0 0 34874 1016 36656 183503;183504;183505 185846;185847;185848;185849 185848 4 VAEEHAPSIVFIDEIDAIGTK KYLGDGPKLVRELFRVAEEHAPSIVFIDEI PSIVFIDEIDAIGTKRYDSNSGGEREIQRT R V A T K R 3 0 0 2 0 0 3 1 1 4 0 1 0 1 1 1 1 0 0 2 0 0 21 0 2253.1529 P62191 P62191 273 293 PSMC1 26S protease regulatory subunit 4 yes yes 3 8.8178E-12 63.184 By MS/MS By MS/MS 1 1 0.96736 0.87797 1.2946 2 Median 0.92292 0.88604 NaN 1 1 Median 1.0139 0.86997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5003300 2498800 2504500 2737400 1395400 1342000 2266000 1103500 1162500 0 0 0 0 0 0 0 0 0 0 0 0 34875 2571 36657 183506;183507 185850;185851 185851 2 VAEELALEQAK GAYGASVSDEELKRRVAEELALEQAKKESE LKRRVAEELALEQAKKESEDQKRLKQAKEL R V A A K K 3 0 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1199.6398 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 66 76 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.00016143 81.338 By matching By MS/MS 1 1 1.3299 1.1672 29.11 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5342 1.434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1528 0.95007 NaN 1 0 Median 17809000 7534800 10274000 0 0 0 0 0 0 1174300 444810 729490 0 0 0 0 0 0 16635000 7089900 9544700 34876 720 36658 183508;183509 185852 185852 1 VAEELALEQAKK GAYGASVSDEELKRRVAEELALEQAKKESE KRRVAEELALEQAKKESEDQKRLKQAKELD R V A K K E 3 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1327.7347 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 66 77 CHCHD3 MICOS complex subunit MIC19 yes no 2;3 4.482E-06 110.38 By MS/MS By MS/MS By matching By MS/MS By matching By MS/MS 2 2 1 1 2 2 1.3067 1.2808 17.515 10 Median 0.9828 0.999 1.5094 2 0 Median 1.2444 1.1373 13.285 2 0 Median 1.2905 1.313 NaN 1 0 Median 1.4892 1.3398 NaN 1 0 Median 1.4493 1.5286 12.216 2 0 Median 1.4214 1.2336 19.603 2 0 Median 42680000 19781000 22899000 24295000 12287000 12007000 10959000 4760100 6199000 1142500 495680 646810 1164300 337710 826640 3028800 1140800 1887900 2090000 758730 1331200 34877 720 36659 183510;183511;183512;183513;183514;183515;183516;183517;183518;183519 185853;185854;185855;185856;185857;185858;185859;185860;185861;185862;185863 185856 11 VAEELVAAAR LVQSHLTRQQGSGLRVAEELVAAARERGSH GSGLRVAEELVAAARERGSHDNITVMVVFL R V A A R E 4 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1027.5662 B5MCT7;P49593 B5MCT7 221 230 PPM1F Protein phosphatase 1F yes no 2 0.024384 55.112 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34878 619 36660 183520 185864 185864 1 VAEETIKDYFEAR LVYDLLKNHLETLSRVAEETIKDYFEARLA SRVAEETIKDYFEARLALLEPVFPIACHRL R V A A R L 2 1 0 1 0 0 3 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 13 1 1569.7675 Q99549 Q99549 729 741 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 0.040202 18.731 By matching By MS/MS 1 2 1.0747 1.1972 5.3235 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98544 1.2021 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0242 1.1445 6.3721 2 0 Median NaN NaN NaN 0 0 Median 14467000 7017900 7449000 0 0 0 0 0 0 3943600 1990100 1953500 0 0 0 10523000 5027800 5495500 0 0 0 34879 3752 36661 183521;183522;183523 185865 185865 1 VAEFHTELER QLLGLNLLFLLSQNRVAEFHTELERLPAKD LSQNRVAEFHTELERLPAKDIQTNVYIKHP R V A E R L 1 1 0 0 0 0 3 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1229.6041 R4GMR5;P48556;K7EJR3;K7EJC1;K7ERW6 R4GMR5 142 151 PSMD8 26S proteasome non-ATPase regulatory subunit 8 yes no 2;3 3.3515E-07 121.6 By MS/MS By MS/MS By matching 1 4 1 1.0131 0.84235 93.305 5 Median 0.61337 0.5732 NaN 1 0 Median 1.0131 0.84235 125.19 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0691 0.86639 NaN 1 0 Median 111530000 78110000 33424000 9299900 4899300 4400500 101490000 72827000 28659000 0 0 0 0 0 0 0 0 0 748710 383520 365190 34880 2362 36662 183524;183525;183526;183527;183528;183529 185866;185867;185868;185869;185870;185871;185872 185870 7 VAEIEHAEK IKIFGSRVRVDSTAKVAEIEHAEKEKMKEK VDSTAKVAEIEHAEKEKMKEKVERILKHGI K V A E K E 2 0 0 0 0 0 3 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 9 0 1024.5189 P78371;F5GWF6;F8VQ14 P78371 264 272 CCT2 T-complex protein 1 subunit beta yes no 2 0.0049104 59.245 By matching By MS/MS 2 1 1.0836 0.99316 8.5499 3 Median 1.0742 1.0471 7.4843 2 0 Median 1.0836 0.93216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184800 1428500 1756300 1278500 587940 690510 1906400 840560 1065800 0 0 0 0 0 0 0 0 0 0 0 0 34881 2644 36663 183530;183531;183532 185873;185874 185874 2 VAEIEHAEKEK IKIFGSRVRVDSTAKVAEIEHAEKEKMKEK STAKVAEIEHAEKEKMKEKVERILKHGINC K V A E K M 2 0 0 0 0 0 4 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 11 1 1281.6565 P78371;F5GWF6;F8VQ14 P78371 264 274 CCT2 T-complex protein 1 subunit beta yes no 2;3 0.021368 47.823 By matching By MS/MS By matching By matching By MS/MS By MS/MS 7 3 2 1 3 3 1.0848 1.0354 37.292 19 Median 1.0848 1.0354 12.742 7 0 Median 1.0634 1.0024 4.1975 3 0 Median 1.2418 1.3132 5.1753 2 0 Median 1.0167 1.0163 NaN 1 0 Median 2.416 2.5769 25.204 3 0 Median 0.98575 0.8439 3.9288 3 0 Median 36448000 15364000 21084000 22462000 9984300 12478000 6348500 3029300 3319200 1104000 466590 637430 117330 58354 58981 5423200 1322500 4100700 992490 502470 490020 34882 2644 36664 183533;183534;183535;183536;183537;183538;183539;183540;183541;183542;183543;183544;183545;183546;183547;183548;183549;183550;183551 185875;185876;185877;185878;185879 185875 5 VAEITELILK LKDQVLRCSKIAGVKVAEITELILKALEND IAGVKVAEITELILKALENDQKVRKEGGKF K V A L K A 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1127.6802 D6RIY6;Q06265;H0Y9L5;D6R905 D6RIY6 242 251 EXOSC9 Exosome complex component RRP45 yes no 2 0.034259 32.841 By matching By matching By MS/MS By matching By matching By matching 1 3 2 2 1 1 1.1836 1.0803 11.916 10 Median 1.1224 1.0799 NaN 1 0 Median 1.228 1.0273 24.172 3 0 Median 1.0835 1.0884 5.0339 2 0 Median 1.2756 1.1048 5.9012 2 0 Median 1.1408 1.0906 NaN 1 0 Median 1.2642 1.0808 NaN 1 0 Median 42145000 20169000 21977000 3088100 1442500 1645600 15479000 7229200 8250000 18850000 9368200 9482100 1870800 864720 1006000 2582400 1142900 1439500 274620 121350 153270 34883 828 36665 183552;183553;183554;183555;183556;183557;183558;183559;183560;183561 185880;185881 185880 2 VAEITGVVETAK VRIGIGNHNSKPVYRVAEITGVVETAKVYQ VYRVAEITGVVETAKVYQLGGTRTNKGLQL R V A A K V 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 0 2 0 0 3 0 0 12 0 1215.6711 Q92541 Q92541 402 413 RTF1 RNA polymerase-associated protein RTF1 homolog yes yes 2 1.427E-05 122.26 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 1.147 1.0414 10.051 6 Median 1.0526 1.024 NaN 1 0 Median 1.1523 0.99233 5.5698 2 0 Median 1.1254 1.2175 2.7624 2 2 Median 1.2134 1.0508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34694000 17099000 17596000 6322800 3553900 2768900 13324000 6556800 6766800 8375600 3870400 4505200 6672100 3117500 3554600 0 0 0 0 0 0 34884 3534 36666 183562;183563;183564;183565;183566;183567 185882;185883;185884;185885;185886 185886 4 VAEKEGWPLDIR PFTPDLAHPVAEVGKVAEKEGWPLDIRVGL VGKVAEKEGWPLDIRVGLIGSCTNSSYEDM K V A I R V 1 1 0 1 0 0 2 1 0 1 1 1 0 0 1 0 0 1 0 1 0 0 12 1 1411.746 A2A274;Q99798 A2A274 392 403 ACO2 Aconitate hydratase, mitochondrial yes no 3 0.0058376 33.589 By MS/MS 1 0.84803 0.86897 NaN 1 Median 0.84803 0.86897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2917400 1506900 1410500 2917400 1506900 1410500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34885 495 36667 183568 185887;185888 185887 2 VAEKLDEIYVAGLVAHSDLDER SENFQTLLDAGLPQKVAEKLDEIYVAGLVA IYVAGLVAHSDLDERAIEALKEFNEDGALA K V A E R A 3 1 0 3 0 0 3 1 1 1 3 1 0 0 0 1 0 0 1 3 0 0 22 1 2441.2438 O60506;F6UXX1 O60506 39 60 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes no 4 0.058709 15.896 By MS/MS 1 0.9381 0.99557 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9381 0.99557 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4046900 1713100 2333800 0 0 0 0 0 0 4046900 1713100 2333800 0 0 0 0 0 0 0 0 0 34886 1619 36668 183569 185889 185889 1 VAEKLEALSVK REKKAGSGKNDHAEKVAEKLEALSVKEETK HAEKVAEKLEALSVKEETKEDAEEKQ____ K V A V K E 2 0 0 0 0 0 2 0 0 0 2 2 0 0 0 1 0 0 0 2 0 0 11 1 1185.6969 F6WQW2;P43487;C9JXG8 F6WQW2 257 267 RANBP1 Ran-specific GTPase-activating protein yes no 2;3 0.00062212 96.113 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1.1276 1.0372 6.9768 5 Median 1.0383 1.0333 8.6701 2 0 Median 1.1345 1.0372 NaN 1 0 Median 1.158 1.151 NaN 1 0 Median 1.1046 0.99532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79521000 25882000 53639000 25695000 8440600 17254000 6980800 1991700 4989100 36253000 11990000 24263000 10592000 3460200 7132100 0 0 0 0 0 0 34887 1052 36669 183570;183571;183572;183573;183574;183575;183576;183577;183578 185890;185891;185892;185893;185894;185895;185896;185897;185898;185899;185900 185898 11 VAELDKITYER AIAEYKKKEELYLQRVAELDKITYERDSFR YLQRVAELDKITYERDSFRQAYEDLRKQRL R V A E R D 1 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1335.7034 Q9NTJ3;E9PD53 Q9NTJ3 1107 1117 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 4.7049E-05 103.34 By MS/MS By MS/MS By MS/MS 3 2 1 1.006 1.1402 10.56 6 Median 1.0587 0.96442 12.416 3 0 Plateau NaN NaN NaN 0 0 Median 1.006 1.1402 2.9491 2 0 Median 1.2455 1.2024 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61431000 29043000 32388000 37509000 17457000 20052000 0 0 0 21612000 10458000 11154000 2311000 1128700 1182200 0 0 0 0 0 0 34888 4108 36670 183579;183580;183581;183582;183583;183584 185901;185902;185903;185904;185905;185906;185907;185908;185909 185901 9 VAELDPVNSYQAWQLATR SAAGDSCPGTQAGRRVAELDPVNSYQAWQL LDPVNSYQAWQLATRGKVAEPAEYLKYGAW R V A T R G 3 1 1 1 0 2 1 0 0 0 2 0 0 0 1 1 1 1 1 2 0 0 18 0 2060.0327 Q92618 Q92618 407 424 ZNF516 Zinc finger protein 516 yes yes 2 0.0039894 28.806 By MS/MS 1 0.83345 0.89618 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83345 0.89618 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 846280 491690 354590 0 0 0 0 0 0 846280 491690 354590 0 0 0 0 0 0 0 0 0 34889 3545 36671 183585 185910 185910 1 VAELEAQAASEVTPTGEK QLEAQRAEAERLRQRVAELEAQAASEVTPT LEAQAASEVTPTGEKEGLGQGQSLEQLEAL R V A E K E 4 0 0 0 0 1 4 1 0 0 1 1 0 0 1 1 2 0 0 2 0 0 18 0 1828.9054 M0QYF9;Q9NSC5 M0QYF9 22 39 HOMER3 Homer protein homolog 3 yes no 2 8.068E-08 91.858 By matching By matching By MS/MS 1 1 1 0.86512 0.8537 12.446 3 Median 0.86512 0.8537 NaN 1 0 Median 1.1354 1.0012 NaN 1 0 Median 0.73051 0.78342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15859000 8518000 7341100 11552000 6152800 5398900 563920 279020 284900 3743600 2086200 1657400 0 0 0 0 0 0 0 0 0 34890 1417 36672 183586;183587;183588 185911;185912 185911 2 VAELFEK LALEEPTVIKKYLLKVAELFEKLRKVEGRV VIKKYLLKVAELFEKLRKVEGRVSSDEDLK K V A E K L 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 834.44872 Q9Y5X3;Q5QPE5;A0A087WUY5 Q9Y5X3 269 275 SNX5 Sorting nexin-5 yes no 2 0.029709 50.127 By MS/MS By matching 1 2 1.1291 1.0681 22.399 3 Plateau 1.1291 1.0681 NaN 1 0 Median 0.98878 0.86294 26.458 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7795800 3599700 4196200 4586800 2171800 2415000 3209000 1427800 1781200 0 0 0 0 0 0 0 0 0 0 0 0 34891 4471 36673 183589;183590;183591 185913 185913 1 VAELLGESDGRR LRSRRQGTDPISQTKVAELLGESDGRRTSQ QTKVAELLGESDGRRTSQEGPGDSVKFEGG K V A R R T 1 2 0 1 0 0 2 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1300.6735 Q9NSK0 Q9NSK0 506 517 KLC4 Kinesin light chain 4 yes yes 3 0.00015052 64.55 By MS/MS By MS/MS 1 1 0.96372 0.91162 4.7694 2 Median 0.95702 0.94289 NaN 1 0 Median 0.97047 0.88139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3334900 1521100 1813800 1680400 738780 941670 1654400 782310 872110 0 0 0 0 0 0 0 0 0 0 0 0 34892 4105 36674 183592;183593 185914;185915;185916;185917 185917 4 VAELLLAK ENSRDVFIDSGGVRRVAELLLAKAAGPELR DSGGVRRVAELLLAKAAGPELRVEGWKALH R V A A K A 2 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 855.54295 Q5T6V5 Q5T6V5 31 38 C9orf64 UPF0553 protein C9orf64 yes yes 2 0.015483 50.127 By MS/MS 1 0.8216 0.7969 NaN 1 Median 0.8216 0.7969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3190500 2068300 1122200 3190500 2068300 1122200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34893 3092 36675 183594 185918 185918 1 VAELSSDDFHLDR PKIQVSELCKKAILRVAELSSDDFHLDRHL LRVAELSSDDFHLDRHLYFACRDDRERFCE R V A D R H 1 1 0 3 0 0 1 0 1 0 2 0 0 1 0 2 0 0 0 1 0 0 13 0 1502.7001 Q92896;H3BM42 Q92896 298 310 GLG1 Golgi apparatus protein 1 yes no 3 0.0001987 66.533 By matching By MS/MS 1 1 1.0254 1.0775 27.94 2 Median 1.3077 1.3128 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8041 0.8843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9779600 4619600 5160000 1732000 677090 1054900 0 0 0 8047600 3942500 4105100 0 0 0 0 0 0 0 0 0 34894 3563 36676 183595;183596 185919;185920 185920 2 VAEMIREEGYDSVFSVVR IQATSPCLHPTDLQKVAEMIREEGYDSVFS MIREEGYDSVFSVVRRHQFRWSEIQKGVRE K V A V R R 1 2 0 1 0 0 3 1 0 1 0 0 1 1 0 2 0 0 1 4 0 0 18 1 2085.0201 Q8NFW8 Q8NFW8 157 174 CMAS N-acylneuraminate cytidylyltransferase yes yes 3 1.7172E-06 69.522 By MS/MS By matching 1 1 1.1069 1.1124 7.017 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97769 1.0586 NaN 1 0 Median 1.2533 1.169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13145000 7300000 5844900 0 0 0 0 0 0 11202000 6497400 4704400 1943000 802580 1140400 0 0 0 0 0 0 34895 3441 36677 183597;183598 185921 185921 1 VAEPGAEATSSTGEESGSEHPPAVPMHNK GREPEASGLKALKARVAEPGAEATSSTGEE ESGSEHPPAVPMHNKRKRPRKKSPRAHREM R V A N K R 4 0 1 0 0 0 5 3 2 0 0 1 1 0 4 4 2 0 0 2 0 0 29 0 2902.3039 Q14684 Q14684 443 471 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 4 0.053099 16.447 By MS/MS 1 0.42597 0.46323 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42597 0.46323 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14984000 12101000 2882800 0 0 0 0 0 0 14984000 12101000 2882800 0 0 0 0 0 0 0 0 0 34896 2890 36678 183599 185922 185922 1 VAEPGAEATSSTGEESGSEHPPAVPMHNKR GREPEASGLKALKARVAEPGAEATSSTGEE SGSEHPPAVPMHNKRKRPRKKSPRAHREML R V A K R K 4 1 1 0 0 0 5 3 2 0 0 1 1 0 4 4 2 0 0 2 0 0 30 1 3058.405 Q14684 Q14684 443 472 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 4 0.038635 10.148 By MS/MS By matching 1 1 0.63235 0.62962 34.748 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43427 0.49246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92078 0.80498 NaN 1 0 Median 10144000 6331400 3812700 0 0 0 0 0 0 9017500 5860300 3157100 0 0 0 0 0 0 1126700 471100 655560 34897 2890 36679 183600;183601 185923 185923 1 VAEQAANDLR DDVGKSVHELERACRVAEQAANDLRAQVTE ERACRVAEQAANDLRAQVTELEDELTAAED R V A L R A 3 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1085.5465 Q7Z406;A1L2Z2 Q7Z406 1553 1562 MYH14 Myosin-14 yes no 2 0.00066973 96.331 By MS/MS By MS/MS 1 1 1.0811 0.98761 13.053 2 Median 1.0847 1.0831 NaN 1 0 Median 1.0776 0.90053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2319200 985230 1334000 707050 289120 417920 1612200 696100 916090 0 0 0 0 0 0 0 0 0 0 0 0 34898 3242 36680 183602;183603 185924;185925;185926 185926 3 VAEQTPLSALYLASLIK KLAPALATGNTVVMKVAEQTPLSALYLASL EQTPLSALYLASLIKEAGFPPGVVNIITGY K V A I K E 3 0 0 0 0 1 1 0 0 1 4 1 0 0 1 2 1 0 1 1 0 0 17 0 1816.0346 P30837 P30837 210 226 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 5.4088E-07 88.087 By MS/MS By MS/MS By matching 2 1 1 0.93422 0.88381 20.274 4 Median 0.78671 0.75147 3.5741 2 0 Median 1.1921 1.0135 NaN 1 0 Median 1.0598 1.1078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14131000 6838500 7292800 7912300 4001100 3911200 5960700 2685800 3274800 258330 151560 106760 0 0 0 0 0 0 0 0 0 34899 2199 36681 183604;183605;183606;183607 185927;185928;185929 185929 3 VAEQTPLTALYVANLIK KLGPALATGNVVVMKVAEQTPLTALYVANL EQTPLTALYVANLIKEAGFPPGVVNIVPGF K V A I K E 3 0 1 0 0 1 1 0 0 1 3 1 0 0 1 0 2 0 1 2 0 0 17 0 1843.0455 P05091;F8VP50 P05091 210 226 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.00022024 47.288 By MS/MS By MS/MS 1 1 1.2309 1.1003 36.411 2 Median 0.90914 0.85054 NaN 1 0 Median 1.6664 1.4234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10779000 5118300 5661100 7723700 3986900 3736800 3055700 1131500 1924300 0 0 0 0 0 0 0 0 0 0 0 0 34900 1860 36682 183608;183609 185930;185931 185930 2 VAEQVLNAVNK SMSLLEDKGLAEVSKVAEQVLNAVNKGLYR EVSKVAEQVLNAVNKGLYREATELWGKAEM K V A N K G 2 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 11 0 1183.6561 Q9HB40 Q9HB40 233 243 SCPEP1 Retinoid-inducible serine carboxypeptidase yes yes 2 0.00011141 147.2 By MS/MS By MS/MS By MS/MS 2 2 1 1.4876 1.3487 27.469 5 Median 1.5956 1.4604 11.257 2 0 Median 1.9835 1.6607 48.83 2 0 Median 1.3369 1.2665 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110510000 40124000 70390000 86891000 32077000 54814000 19283000 6148000 13135000 4339800 1898600 2441200 0 0 0 0 0 0 0 0 0 34901 4015 36683 183610;183611;183612;183613;183614 185932;185933;185934;185935;185936;185937;185938;185939;185940 185934 9 VAERPQHMLMR FKTLERSYLLKINGKVAERPQHMLMRVSVG INGKVAERPQHMLMRVSVGIHKEDIDAAIE K V A M R V 1 2 0 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 11 1 1366.6962 P23921 P23921 163 173 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 2;3 0.0001109 71.555 By MS/MS By MS/MS 2 3 1.0634 1.059 49.857 5 Median 0.6953 0.71289 60.091 2 0 Median 1.0706 1.0592 55.985 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36641000 18206000 18435000 9950800 5250200 4700600 26690000 12956000 13734000 0 0 0 0 0 0 0 0 0 0 0 0 34902 2121 36684 183615;183616;183617;183618;183619 185941;185942;185943;185944;185945 185942 5 VAETANEEEVK PTENLRFRDASLVFKVAETANEEEVKKMCM LVFKVAETANEEEVKKMCMYKYPGMKKKMG K V A V K K 2 0 1 0 0 0 4 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1217.5776 P61221;D6R9I9 P61221 333 343 ABCE1 ATP-binding cassette sub-family E member 1 yes no 2 0.0018837 56.563 By MS/MS By matching 1 1 0.90476 0.87183 0.0024305 2 Median NaN NaN NaN 0 0 Median 1.0041 0.87185 NaN 1 0 Median 0.81521 0.87182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2275600 1151600 1124000 0 0 0 1096500 650660 445830 1179100 500970 678130 0 0 0 0 0 0 0 0 0 34903 2550 36685 183620;183621 185946;185947 185946 2 VAETANEEEVKK PTENLRFRDASLVFKVAETANEEEVKKMCM VFKVAETANEEEVKKMCMYKYPGMKKKMGE K V A K K M 2 0 1 0 0 0 4 0 0 0 0 2 0 0 0 0 1 0 0 2 0 0 12 1 1345.6725 P61221;D6R9I9 P61221 333 344 ABCE1 ATP-binding cassette sub-family E member 1 yes no 3 0.026236 20.857 By MS/MS By matching 1 1 1.1054 1.1549 3.4211 2 Median NaN NaN NaN 0 0 Median 1.2604 1.1832 NaN 1 0 Median 0.96953 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2249200 1134600 1114600 0 0 0 1552000 784820 767230 697140 349800 347330 0 0 0 0 0 0 0 0 0 34904 2550 36686 183622;183623 185948 185948 1 VAETAVQLFISGDK FARLRMEKRHNYVRKVAETAVQLFISGDKV KVAETAVQLFISGDKVNVAGLVLAGSADFK K V A D K V 2 0 0 1 0 1 1 1 0 1 1 1 0 1 0 1 1 0 0 2 0 0 14 0 1476.7824 B7Z7P8;P62495;I3L492 B7Z7P8 191 204 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 6.8256E-05 79.693 By MS/MS By matching 2 1 0.92815 0.87405 23.311 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0376 1.0307 NaN 1 0 Median 0.83026 0.74123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5534500 2464100 3070400 0 0 0 0 0 0 2825800 970290 1855500 2708700 1493800 1214900 0 0 0 0 0 0 34905 638 36687 183624;183625;183626 185949;185950 185950 2 VAEVAPEERENVAVAK LNKDKETEERTDGERVAEVAPEERENVAVA AEVAPEERENVAVAKLQESQPGNAVIDKET R V A A K L 4 1 1 0 0 0 4 0 0 0 0 1 0 0 1 0 0 0 0 4 0 0 16 1 1709.8948 Q6IQ49 Q6IQ49 354 369 SDE2 Protein SDE2 homolog yes yes 3 0.032567 15.818 By matching By MS/MS 1 1 0.94349 0.94182 13.213 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89519 0.85781 NaN 1 0 Median 0.99438 1.0341 NaN 1 0 Median NaN NaN NaN 0 0 Median 9194900 4696500 4498400 0 0 0 0 0 0 0 0 0 5917800 3176100 2741800 3277000 1520400 1756600 0 0 0 34906 3140 36688 183627;183628 185951 185951 1 VAEVEGEQVDNK LQTLPEIVAKEAQVKVAEVEGEQVDNKAKL QVKVAEVEGEQVDNKAKLEATLQEEAAIQQ K V A N K A 1 0 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 0 3 0 0 12 0 1315.6256 O95202 O95202 452 463 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 2.5339E-05 96.89 By MS/MS By MS/MS By MS/MS 1 2 1 1.1931 1.1461 64.407 4 Median 1.1087 1.0011 NaN 1 0 Median 0.7688 0.66787 95.507 2 1 Median 1.284 1.3187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35479000 19044000 16435000 13968000 6297100 7670500 13211000 9052700 4158700 8300000 3693900 4606000 0 0 0 0 0 0 0 0 0 34907 1754 36689 183629;183630;183631;183632 185952;185953;185954;185955;185956;185957;185958;185959 185958 8 VAEVLNDPENMEK MRSRKQGLDNVHKQRVAEVLNDPENMEKRR QRVAEVLNDPENMEKRRSRESLNVDVVKYE R V A E K R 1 0 2 1 0 0 3 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 13 0 1486.6974 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;H0YJU9;H0YJL0;H0YJT3;H0YG16;H0YGB8 G5E9S8 504 516 KLC1 Kinesin light chain 1 yes no 2 1.1948E-05 96.113 By MS/MS By matching 2 1 0.85056 0.78178 6.712 2 Median 0.79424 0.74554 NaN 1 0 Median 0.91087 0.81978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12291000 6408700 5882600 11778000 6110000 5668000 513230 298690 214530 0 0 0 0 0 0 0 0 0 0 0 0 34908 896 36690 183633;183634;183635 185960;185961;185962 185962 3 VAEVLQVPPMR AQRQNGWLPISAMNKVAEVLQVPPMRVYEV AMNKVAEVLQVPPMRVYEVATFYTMYNRKP K V A M R V 1 1 0 0 0 1 1 0 0 0 1 0 1 0 2 0 0 0 0 3 0 0 11 0 1237.6853 E7EPT4;P19404 E7EPT4 104 114 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.00087286 86.011 By MS/MS 2 0.61186 0.58407 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61186 0.58407 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3740000 2321900 1418200 0 0 0 0 0 0 3740000 2321900 1418200 0 0 0 0 0 0 0 0 0 34909 873 36691 183636;183637 185963;185964 185963 2 VAEYGGNTLGYGSR DKLVIYAGPNTNSRKVAEYGGNTLGYGSRS KVAEYGGNTLGYGSRSVLGTGWPKDLVKCI K V A S R S 1 1 1 0 0 0 1 4 0 0 1 0 0 0 0 1 1 0 2 1 0 0 14 0 1442.679 F8VWT9;J3KPF0;Q9Y4D8 F8VWT9 979 992 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 yes no 2 0.00038344 72.006 By MS/MS 1 1.441 1.254 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.441 1.254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1200500 454140 746370 0 0 0 0 0 0 0 0 0 1200500 454140 746370 0 0 0 0 0 0 34910 1070 36692 183638 185965 185965 1 VAFDPEQKPLHGVLK KTDKSILVSPTGPSRVAFDPEQKPLHGVLK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK R V A L K T 1 0 0 1 0 1 1 1 1 0 2 2 0 1 2 0 0 0 0 2 0 0 15 1 1676.925 Q14684 Q14684 713 727 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3;4 0.00019859 47.774 By matching By MS/MS By MS/MS By MS/MS 1 4 2 2 0.79421 0.8695 12.185 9 Median NaN NaN NaN 0 0 Median 1.0442 1.0095 NaN 1 0 Median 0.77834 0.86752 12.218 4 0 Median 0.91755 0.86019 12.753 2 0 Median 0.7176 0.80381 13.94 2 0 Median NaN NaN NaN 0 0 Median 84862000 46860000 38002000 0 0 0 1251700 619460 632240 65751000 35115000 30636000 3384600 1805400 1579200 14475000 9320200 5154400 0 0 0 34911 2890 36693 183639;183640;183641;183642;183643;183644;183645;183646;183647 185966;185967;185968;185969;185970;185971;185972 185968 7 VAFERGEEPGK VTQPRRISAVSVAERVAFERGEEPGKSCGY VAERVAFERGEEPGKSCGYSVRFESILPRP R V A G K S 1 1 0 0 0 0 3 2 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 1 1217.6041 Q08211 Q08211 457 467 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0.0089128 56.563 By MS/MS By MS/MS By matching 2 5 1 0.94603 0.96448 21.997 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87235 0.99256 16.839 2 0 Median NaN NaN NaN 0 0 Median 0.90976 1.0299 27.555 5 0 Median 0.98376 0.90321 NaN 1 0 Median 22081000 11598000 10483000 0 0 0 0 0 0 5170300 2674900 2495300 0 0 0 16190000 8436200 7753700 720610 487090 233530 34912 2736 36694 183648;183649;183650;183651;183652;183653;183654;183655 185973;185974;185975;185976;185977 185976 5 VAFGSLAANGPTTLVDK SAPPFASAKAAADPKVAFGSLAANGPTTLV FGSLAANGPTTLVDKVSNPKTNGDSQQPSS K V A D K V 3 0 1 1 0 0 0 2 0 0 2 1 0 1 1 1 2 0 0 2 0 0 17 0 1659.8832 Q9UKX7 Q9UKX7 111 127 NUP50 Nuclear pore complex protein Nup50 yes yes 2 2.1556E-05 65.563 By MS/MS By matching By matching 1 1 2 0.95569 0.87606 31.572 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81808 0.79464 NaN 1 0 Median 1.1165 0.96583 NaN 1 0 Median 0.77367 0.81085 52.347 2 0 Median NaN NaN NaN 0 0 Median 15267000 7466100 7800900 0 0 0 0 0 0 12436000 6096800 6339700 954910 398500 556420 1875600 970850 904790 0 0 0 34913 4317 36695 183656;183657;183658;183659 185978;185979;185980 185979 3 VAFHPARPFLLVASQR RSQSPFRRSHGQVQRVAFHPARPFLLVASQ AFHPARPFLLVASQRSVRLYHLLRQELTKK R V A Q R S 3 2 0 0 0 1 0 0 1 0 2 0 0 2 2 1 0 0 0 2 0 0 16 1 1808.021 Q14137 Q14137 585 600 BOP1 Ribosome biogenesis protein BOP1 yes yes 3;4 0.00023216 42.242 By MS/MS By matching 5 3 0.92424 0.97477 15.449 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89842 0.95767 16.592 5 0 Median 1.1222 0.99217 16.866 3 0 Median 22698000 11737000 10961000 0 0 0 0 0 0 0 0 0 0 0 0 19825000 10521000 9303800 2873100 1215600 1657500 34914 2856 36696 183660;183661;183662;183663;183664;183665;183666;183667 185981;185982;185983 185982 3 VAFITGGGSGIGFR PAYRHLFCPDLLRDKVAFITGGGSGIGFRI KVAFITGGGSGIGFRIAEIFMRHGCHTVIA K V A F R I 1 1 0 0 0 0 0 5 0 2 0 0 0 2 0 1 1 0 0 1 0 0 14 0 1337.7092 A0A0J9YWI0;Q4VXZ8;Q9NUI1;G3V0I9;A0A0J9YXZ6;A0A0J9YY83 A0A0J9YWI0 30 43 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 2 0.040038 41.54 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34915 289 36697 183668 185984 185984 1 VAFITGGGTGLGK PLQKAMLPPNSFQGKVAFITGGGTGLGKGM GKVAFITGGGTGLGKGMTTLLSSLGAQCVI K V A G K G 1 0 0 0 0 0 0 5 0 1 1 1 0 1 0 0 2 0 0 1 0 0 13 0 1176.6503 Q16698;E5RJG7;E5RFV2;E5RJD2;E5RID6 Q16698 61 73 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 2 2.6176E-05 93.258 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.5741 1.3196 34.181 5 Median 0.84225 0.76288 NaN 1 0 Median 1.7539 1.4679 15.055 2 0 Median 0.82607 0.79477 NaN 1 0 Median 1.5971 1.3441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76982000 40741000 36241000 58003000 31475000 26528000 4934800 1872700 3062100 9965700 5801700 4164100 4078200 1591500 2486700 0 0 0 0 0 0 34916 2994 36698 183669;183670;183671;183672;183673 185985;185986;185987;185988;185989;185990;185991 185986 7 VAFTGSTEIGR PTAGAAIASHEDVDKVAFTGSTEIGRVIQV DVDKVAFTGSTEIGRVIQVAAGSSNLKRVT K V A G R V 1 1 0 0 0 0 1 2 0 1 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1136.5826 P05091 P05091 258 268 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2 1.6768E-05 122.33 By MS/MS By MS/MS 1 2 2.1207 1.8914 29.607 2 Median 2.4673 2.3319 NaN 1 1 Median 1.8227 1.5341 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31818000 11131000 20687000 21875000 7489700 14385000 9943300 3641400 6301900 0 0 0 0 0 0 0 0 0 0 0 0 34917 1860 36699 183674;183675;183676 185992;185993;185994 185994 3 VAFTLLEK SLAGVVIADNEYPSRVAFTLLEKVLDEFSK DNEYPSRVAFTLLEKVLDEFSKQVDRIDWP R V A E K V 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 8 0 919.53787 O15498 O15498 89 96 YKT6 Synaptobrevin homolog YKT6 yes yes 2 0.0055363 75.213 By MS/MS By matching By MS/MS By matching By matching 3 1 2 1 1 1.2892 1.0819 57.741 8 Median 0.99149 0.97011 14.638 3 0 Plateau 1.1688 1.0219 NaN 1 0 Median 2.0997 2.136 57.607 2 0 Median NaN NaN NaN 0 0 Median 3.3359 3.4902 NaN 1 0 Median 1.422 1.1454 NaN 1 0 Median 32062000 14149000 17913000 22079000 10742000 11337000 188750 83080 105670 8557200 3045900 5511200 0 0 0 1075300 215000 860260 162200 63214 98990 34918 1550 36700 183677;183678;183679;183680;183681;183682;183683;183684 185995;185996;185997;185998;185999 185995 5 VAFVIPPVVAAPPSLR TLCRCGESLQDVIDRVAFVIPPVVAAPPSL AFVIPPVVAAPPSLRVPRPPPLYSHRMRIL R V A L R V 3 1 0 0 0 0 0 0 0 1 1 0 0 1 4 1 0 0 0 4 0 0 16 0 1631.9763 Q96L91 Q96L91 1831 1846 EP400 E1A-binding protein p400 yes yes 2 0.0001111 69.01 By MS/MS By matching 2 2 0.51762 0.50779 7.6928 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46392 0.50345 6.3529 2 0 Median 0.60911 0.52813 10.69 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9635800 6440900 3194900 0 0 0 0 0 0 9207200 6177400 3029800 428560 263500 165060 0 0 0 0 0 0 34919 3700 36701 183685;183686;183687;183688 186000;186001;186002 186000 3 VAFVNFR VKISHLSGSGSGDERVAFVNFRRPEDARAA GSGSGDERVAFVNFRRPEDARAAKHARGRL R V A F R R 1 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 851.46537 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 173 179 RBM15 Putative RNA-binding protein 15 yes no 2 0.0024619 126.05 By MS/MS By matching By MS/MS By matching 1 2 2 3 1.1982 1.0967 10.195 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2166 1.2926 NaN 1 0 Median 1.2321 1.0478 7.4001 2 0 Median 1.0144 1.0635 8.7301 2 0 Median 1.2569 1.0894 10.466 3 0 Median 15206000 7595500 7610800 0 0 0 0 0 0 9165300 4574500 4590800 760500 328650 431860 3999400 2093700 1905700 1281100 598700 682360 34920 60 36702 183689;183690;183691;183692;183693;183694;183695;183696 186003;186004;186005 186004 3 VAGAATPKK AKPRKPAGAAKKPKKVAGAATPKKSIKKTP AKKPKKVAGAATPKKSIKKTPKKVKKPATA K V A K K S 3 0 0 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 1 0 0 9 1 841.50215 P16402 P16402 142 150 HIST1H1D Histone H1.3 yes yes 2 0.02724 40.103 By MS/MS 1 0.00064012 0.00059174 NaN 1 Median NaN NaN NaN 0 0 Median 0.00064012 0.00059174 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 332470000 332130000 347180 0 0 0 332470000 332130000 347180 0 0 0 0 0 0 0 0 0 0 0 0 34921 2028 36703 183697 186006;186007 186007 2 VAGALVQNTEK CAGGPRKGYMGHLTRVAGALVQNTEKGPNA HLTRVAGALVQNTEKGPNAEQLRQLLKELP R V A E K G 2 0 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 Q9UPN7 Q9UPN7 470 480 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 2 0.059911 25.621 By MS/MS 1 1.5582 1.406 NaN 1 Median NaN NaN NaN 0 0 Median 1.5582 1.406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 649090 208980 440120 0 0 0 649090 208980 440120 0 0 0 0 0 0 0 0 0 0 0 0 34922 4356 36704 183698 186008 186008 1 VAGALVQNTEKGPNAEQLR CAGGPRKGYMGHLTRVAGALVQNTEKGPNA LVQNTEKGPNAEQLRQLLKELPSEQQEQWE R V A L R Q 3 1 2 0 0 2 2 2 0 0 2 1 0 0 1 0 1 0 0 2 0 0 19 1 1994.0545 Q9UPN7 Q9UPN7 470 488 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 yes yes 3 1.9287E-13 101.67 By MS/MS 1 1.0358 1.079 NaN 1 Median 1.0358 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9894500 4783200 5111300 9894500 4783200 5111300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34923 4356 36705 183699 186009;186010 186009 2 VAGDCLDEK WLDLKDNPLDPVLAKVAGDCLDEKQCKQCA DPVLAKVAGDCLDEKQCKQCANKVLQHMKA K V A E K Q 1 0 0 2 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1005.4437 Q96AG4 Q96AG4 127 135 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.017009 42.109 By MS/MS 1 1.0199 0.86427 NaN 1 Median NaN NaN NaN 0 0 Median 1.0199 0.86427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186100 637830 548300 0 0 0 1186100 637830 548300 0 0 0 0 0 0 0 0 0 0 0 0 34924 3600 36706 183700 186011 186011 1 VAGEDMLVWR FLASNESRIQTESHRVAGEDMLVWRWTKPS TESHRVAGEDMLVWRWTKPSSFSDSER___ R V A W R W 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 1 0 2 0 0 10 0 1174.5805 Q8NC56;H0Y9B7 Q8NC56 482 491 LEMD2 LEM domain-containing protein 2 yes no 2 0.00037046 107.66 By matching By MS/MS By matching 1 2 1 1.9197 1.7852 37.408 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1045 3.2221 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7954 1.7852 26.661 2 0 Median 1.6913 1.4662 NaN 1 0 Median 18199000 5804200 12395000 0 0 0 0 0 0 4080000 904520 3175500 0 0 0 13435000 4665900 8768600 684470 233680 450800 34925 3415 36707 183701;183702;183703;183704 186012;186013 186012 2 VAGFDLDGTLITTR KLLVFTAAGVKPQGKVAGFDLDGTLITTRS KVAGFDLDGTLITTRSGKVFPTGPSDWRIL K V A T R S 1 1 0 2 0 0 0 2 0 1 2 0 0 1 0 0 3 0 0 1 0 0 14 0 1477.7777 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1 M0QYH2 167 180 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 4.031E-05 85.288 By matching By MS/MS By MS/MS 1 2 1 0.82378 0.76228 23.084 4 Median NaN NaN NaN 0 0 Median 0.79493 0.68649 NaN 1 0 Median 0.72012 0.74277 18.475 2 0 Median 1.2574 1.0822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30116000 15413000 14703000 0 0 0 829760 471700 358060 27426000 14166000 13260000 1859700 774780 1084900 0 0 0 0 0 0 34926 1418 36708 183705;183706;183707;183708 186014;186015 186014 2 VAGHPNIVINNAAGNFISPTER RDPDMVQNTVSELIKVAGHPNIVINNAAGN VINNAAGNFISPTERLSPNAWKTITDIVLN K V A E R L 3 1 4 0 0 0 1 2 1 3 0 0 0 1 2 1 1 0 0 2 0 0 22 0 2290.1818 Q16698;E5RJG7;E5RFV2;E5RJD2 Q16698 134 155 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes no 3 2.8802E-15 96.379 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 3 3 1 0.63143 0.69257 20.651 9 Median 0.5909 0.55147 NaN 1 0 Median 0.95746 0.79632 NaN 1 0 Median 0.59045 0.59641 12.532 3 0 Median 0.92633 0.82948 24.593 3 0 Plateau 0.87869 0.86687 NaN 1 0 Median NaN NaN NaN 0 0 Median 133450000 78479000 54968000 76623000 46209000 30414000 8168700 4160000 4008700 34014000 20507000 13507000 11848000 5927800 5920000 2793900 1674400 1119600 0 0 0 34927 2994 36709 183709;183710;183711;183712;183713;183714;183715;183716;183717 186016;186017;186018;186019;186020;186021;186022 186016 7 VAGHSLGYGFVNYVTAK SSIGEVESAKLIRDKVAGHSLGYGFVNYVT GHSLGYGFVNYVTAKDAERAINTLNGLRLQ K V A A K D 2 0 1 0 0 0 0 3 1 0 1 1 0 1 0 1 1 0 2 3 0 0 17 0 1781.9101 Q15717;M0QZR9 Q15717 56 72 ELAVL1 ELAV-like protein 1 yes no 2;3 6.6502E-07 85.493 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 1.1518 1.0494 24.125 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0394 1.0026 NaN 1 0 Median 1.3856 1.166 19.359 3 0 Plateau 1.0959 1.0967 18.494 3 0 Median 1.2105 0.97933 31.077 3 0 Median 171660000 81637000 90027000 0 0 0 0 0 0 43864000 21223000 22641000 3553300 1421200 2132000 105050000 49620000 55428000 19198000 9372400 9826000 34928 2964 36710 183718;183719;183720;183721;183722;183723;183724;183725;183726;183727 186023;186024;186025;186026;186027;186028;186029;186030;186031;186032 186024 10 VAGIESHSELQISR ECEKARQELQEAKEKVAGIESHSELQISRQ KVAGIESHSELQISRQQNELAELHANLARA K V A S R Q 1 1 0 0 0 1 2 1 1 2 1 0 0 0 0 3 0 0 0 1 0 0 14 0 1524.7896 A0A087WY61;Q14980 Q14980 856 869 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 2.9517E-11 176.8 By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 3 1.0723 0.9891 21.967 12 Median 1.1126 1.0507 61.172 2 0 Median 1.1426 0.97261 10.52 2 0 Median 0.92918 1.0131 4.9881 2 0 Median 1.0889 0.95877 3.8381 3 0 Median 1.0048 1.0241 22.596 3 0 Median NaN NaN NaN 0 0 Median 559140000 279950000 279190000 13033000 5404800 7627800 25224000 11871000 13353000 364200000 186140000 178070000 52326000 23694000 28632000 104350000 52843000 51510000 0 0 0 34929 2905;77 36711 183728;183729;183730;183731;183732;183733;183734;183735;183736;183737;183738;183739 186033;186034;186035;186036;186037;186038;186039;186040;186041;186042;186043;186044;186045;186046;186047;186048;186049;186050;186051;186052;186053;186054;186055;186056;186057 186044 25 VAGILTVK GSLSGWSSPKDVILKVAGILTVKGGTGAIV PKDVILKVAGILTVKGGTGAIVEYHGPGVD K V A V K G 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 8 0 799.51674 A2A274;Q99798 A2A274 251 258 ACO2 Aconitate hydratase, mitochondrial yes no 2 0.0075885 66.429 By MS/MS By MS/MS 1 3 1.7214 1.4911 19.076 4 Median 1.1669 1.071 NaN 1 0 Median 1.7522 1.5321 6.626 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15211000 6279900 8931500 7497600 3563300 3934400 7713700 2716600 4997100 0 0 0 0 0 0 0 0 0 0 0 0 34930 495 36712 183740;183741;183742;183743 186058;186059;186060;186061 186059 4 VAGISLAYSSVQDVQK QFNGKGSYGNGGAMRVAGISLAYSSVQDVQ AGISLAYSSVQDVQKFARLSAQLTHASSLG R V A Q K F 2 0 0 1 0 2 0 1 0 1 1 1 0 0 0 3 0 0 1 3 0 0 16 0 1663.8781 Q9NX46 Q9NX46 157 172 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 yes yes 2 2.1098E-10 108.37 By MS/MS By matching 1 1 1.1259 0.99671 27.953 2 Median 1.3141 1.2145 NaN 1 0 Median 0.9647 0.81795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16776000 7215800 9560500 15997000 6696700 9300100 779480 519100 260380 0 0 0 0 0 0 0 0 0 0 0 0 34931 4157 36713 183744;183745 186062;186063 186062 2 VAGLETISTATGR NSQKNTFRKNPSDPRVAGLETISTATGRKL PRVAGLETISTATGRKLLVSGWWGMVRHPN R V A G R K 2 1 0 0 0 0 1 2 0 1 1 0 0 0 0 1 3 0 0 1 0 0 13 0 1274.683 O76062;H0YEN6;E9PS18;E9PLS9 O76062 323 335 TM7SF2 Delta(14)-sterol reductase yes no 2 0.000403 85.355 By MS/MS 1 0.48201 0.47245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48201 0.47245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8358500 5370900 2987600 0 0 0 0 0 0 8358500 5370900 2987600 0 0 0 0 0 0 0 0 0 34932 1719 36714 183746 186064 186064 1 VAGLLTQK VSSCQEKREPQGFHKVAGLLTQKLTYENGL EPQGFHKVAGLLTQKLTYENGLLKMNFTGG K V A Q K L 1 0 0 0 0 1 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 828.5069 P11717 P11717 1294 1301 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.0023383 113.7 By matching By MS/MS By matching 1 2 1 1.2348 1.0902 13.008 4 Median 0.9973 0.95685 NaN 1 0 Median 1.2348 1.0902 12.278 2 0 Median NaN NaN NaN 0 0 Median 1.4892 1.2499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12832000 5689700 7142700 582970 257820 325150 11497000 5136400 6360800 0 0 0 752210 295490 456720 0 0 0 0 0 0 34933 1969 36715 183747;183748;183749;183750 186065;186066 186065 2 VAGLQMTLTELR RALGLVSGQEAGPHRVAGLQMTLTELRAFL PHRVAGLQMTLTELRAFLDQMNNLPCAMHQ R V A L R A 1 1 0 0 0 1 1 1 0 0 3 0 1 0 0 0 2 0 0 1 0 0 12 0 1330.7279 P41229 P41229 843 854 KDM5C Lysine-specific demethylase 5C yes yes 2 0.0013313 82.749 By MS/MS 1 1.1171 1.0957 NaN 1 Median 1.1171 1.0957 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3194900 1437600 1757300 3194900 1437600 1757300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34934 2299 36716 183751 186067 186067 1 VAGMDVELTVEER EQAERYDEMVESMKKVAGMDVELTVEERNL KKVAGMDVELTVEERNLLSVAYKNVIGARR K V A E R N 1 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 1 0 0 3 0 0 13 0 1446.7024 P62258;B4DJF2;I3L3T1;K7EIT4 P62258 30 42 YWHAE 14-3-3 protein epsilon yes no 2 4.7379E-22 157.24 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0531 0.9479 10.384 6 Median 1.0087 0.94438 NaN 1 1 Median 1.0437 0.87848 11.283 2 2 Median 1.068 1.0381 10.955 2 2 Median 1.0995 0.91714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50112000 25321000 24791000 12867000 6497800 6369100 15623000 8119500 7503100 16139000 7966800 8171700 5483700 2737000 2746700 0 0 0 0 0 0 34935 2576 36717;36718 183752;183753;183754;183755;183756;183757 186068;186069;186070;186071;186072;186073 186069 1248 6 VAGMLQSFQGK KGLLTYTSWEDALSRVAGMLQSFQGKDVAA ALSRVAGMLQSFQGKDVAAIAGGLVDAEAL R V A G K D 1 0 0 0 0 2 0 2 0 0 1 1 1 1 0 1 0 0 0 1 0 0 11 0 1164.5961 P28331;B4DJ81 P28331 326 336 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.00011219 124.23 By MS/MS By matching By matching By matching 1 1 1 1 0.95217 0.94244 12.035 4 Median 0.94149 0.85083 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84548 0.95542 NaN 1 0 Median 0.96297 0.92963 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2548 1.1343 NaN 1 0 Median 74934000 39560000 35373000 13536000 6280300 7256200 0 0 0 58168000 31765000 26403000 1053300 439480 613800 0 0 0 2176000 1075900 1100200 34936 2165 36719 183758;183759;183760;183761 186074 186074 1 VAGPLVNVER V A E R 1 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 3 0 0 10 0 1052.5978 REV__P19823 yes no 2 0.0032846 57.281 By matching By matching By MS/MS By MS/MS By matching By matching 3 2 3 4 1 1 0.8949 0.78912 21.697 14 Median 1.1285 1.1504 22.101 3 0 Median 0.80051 0.67546 23.697 2 0 Median 0.74404 0.72675 5.795 3 0 Median 0.92334 0.79166 7.9735 4 0 Median 1.1789 1.1887 NaN 1 0 Median 0.86733 0.73997 NaN 1 0 Median 267190000 136530000 130660000 19639000 10626000 9013000 10471000 5126600 5344400 38391000 20465000 17926000 196550000 99290000 97257000 985220 446670 538540 1156700 580500 576150 + 34937 4536 36720 183762;183763;183764;183765;183766;183767;183768;183769;183770;183771;183772;183773;183774;183775 186075;186076;186077 186076 3 VAGQDGSVVQFK KEGVKTENNDHINLKVAGQDGSVVQFKIKR NLKVAGQDGSVVQFKIKRHTPLSKLMKAYC K V A F K I 1 0 0 1 0 2 0 2 0 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1233.6354 P61956;A8MUA9;A8MU27;Q6EEV6;P55854 P61956 22 33 SUMO2;SUMO3;SUMO4 Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 3 yes no 2 2.2273E-06 166.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 2 3 1.0595 1.0207 12.564 17 Median 1.013 0.91873 8.9957 5 0 Median 1.3333 1.0911 3.4208 3 0 Plateau 1.0098 0.9885 17.423 4 0 Median 1.3258 1.062 0.57824 2 0 Median 0.95054 1.0206 10.976 3 0 Median NaN NaN NaN 0 0 Median 750150000 345260000 404890000 266220000 130750000 135460000 222560000 95721000 126840000 183720000 85086000 98638000 71599000 30974000 40625000 6048100 2727300 3320900 0 0 0 34938 2562 36721 183776;183777;183778;183779;183780;183781;183782;183783;183784;183785;183786;183787;183788;183789;183790;183791;183792 186078;186079;186080;186081;186082;186083;186084;186085;186086;186087;186088;186089;186090;186091;186092;186093;186094;186095;186096;186097;186098;186099;186100;186101;186102;186103;186104;186105;186106 186099 29 VAGQLLPLAYNLLK LGMDLFCYGSHYFHKVAGQLLPLAYNLLKR KVAGQLLPLAYNLLKRNLFAEIIEEHLANR K V A L K R 2 0 1 0 0 1 0 1 0 0 5 1 0 0 1 0 0 0 1 1 0 0 14 0 1511.9076 Q9NWY4;A8MVJ9 Q9NWY4 308 321 C4orf27 UPF0609 protein C4orf27;Putative UPF0609 protein C4orf27-like yes no 2 0.0009231 55.461 By MS/MS By matching 1 1 1.0831 0.92017 15.022 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1921 1.0233 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98404 0.82744 NaN 1 0 Median 48499000 22583000 25916000 0 0 0 0 0 0 0 0 0 48239000 22463000 25776000 0 0 0 259870 120200 139670 34939 4153 36722 183793;183794 186107 186107 1 VAGSVTELIQAAEAMK PSPELKQQLTGHSKRVAGSVTELIQAAEAM AGSVTELIQAAEAMKGTEWVDPEDPTVIAE R V A M K G 4 0 0 0 0 1 2 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 16 0 1616.8444 Q9Y490 Q9Y490 2276 2291 TLN1 Talin-1 yes yes 2 3.5055E-08 129.84 By MS/MS By MS/MS By matching By matching By matching 3 5 1 1 1 1.13 1.0056 18.116 11 Median 0.99736 0.96354 13.635 3 0 Median 1.1535 1.0056 19.726 5 0 Median 1.3078 1.456 NaN 1 0 Median 1.2559 1.1292 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.13 0.97613 NaN 1 0 Median 28394000 13048000 15346000 14601000 6968100 7633000 11234000 5051600 6182800 2184800 871410 1313400 227330 81002 146330 0 0 0 146650 76404 70247 34940 4441 36723 183795;183796;183797;183798;183799;183800;183801;183802;183803;183804;183805 186108;186109;186110;186111 186109 4 VAGTGEGGLEEMVEELNSGK DWALFTYEGNSNDIRVAGTGEGGLEEMVEE EGGLEEMVEELNSGKVMYAFCRVKDPNSGL R V A G K V 1 0 1 0 0 0 5 5 0 0 2 1 1 0 0 1 1 0 0 2 0 0 20 0 2004.931 Q9UJU6;B4DDD6;F8WBG8 Q9UJU6 42 61 DBNL Drebrin-like protein yes no 2 3.3576E-05 43.382 By MS/MS 1 0.95942 0.9131 NaN 1 Median 0.95942 0.9131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3672700 1897300 1775400 3672700 1897300 1775400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34941 4298 36724 183806 186112;186113 186113 2 VAGTQACATETIDTSR GHWANQLAAVAAGARVAGTQACATETIDTS AGTQACATETIDTSRVSLRAPQEFMTSHSE R V A S R V 3 1 0 1 1 1 1 1 0 1 0 0 0 0 0 1 4 0 0 1 0 0 16 0 1679.7785 Q9BRR6 Q9BRR6 409 424 ADPGK ADP-dependent glucokinase yes yes 2 0.00013392 54.7 By MS/MS 1 1.3782 1.1956 NaN 1 Median NaN NaN NaN 0 0 Median 1.3782 1.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1626900 693970 932970 0 0 0 1626900 693970 932970 0 0 0 0 0 0 0 0 0 0 0 0 34942 3801 36725 183807 186114;186115 186114 2 VAGVVAPTLPR KLIDSWMGKGAAKLRVAGVVAPTLPREDLE AKLRVAGVVAPTLPREDLEKIIAHFLIQQY R V A P R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 3 0 0 11 0 1078.6499 P46063 P46063 529 539 RECQL ATP-dependent DNA helicase Q1 yes yes 2 1.0788E-09 172.94 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 4 1 0.87059 0.75817 10.233 11 Median 0.67318 0.65699 0.89961 2 0 Median 0.87059 0.7534 NaN 1 0 Median 0.71034 0.73174 7.2772 3 0 Median 0.95866 0.82043 8.2557 4 0 Median NaN NaN NaN 0 0 Median 0.90312 0.76113 NaN 1 0 Median 108980000 60851000 48125000 15833000 9611100 6222300 7516700 3755500 3761200 60727000 34539000 26188000 24684000 12849000 11835000 0 0 0 214980 96775 118200 34943 2337 36726 183808;183809;183810;183811;183812;183813;183814;183815;183816;183817;183818 186116;186117;186118;186119;186120;186121;186122;186123;186124;186125;186126;186127 186116 12 VAGYAALLEQYQK KGEESNSSANKCLLKVAGYAALLEQYQKAI LKVAGYAALLEQYQKAIDIYEQVGTNAMDS K V A Q K A 3 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 0 0 2 1 0 0 13 0 1452.7613 M0R0Y2;P54920;M0R2M1;M0R027;M0R058 M0R0Y2 129 141 NAPA Alpha-soluble NSF attachment protein yes no 2 3.4514E-05 91.584 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0808 0.97021 5.6007 4 Median 1.057 0.95912 NaN 1 0 Median 1.1676 0.98143 NaN 1 0 Median 1.1051 1.0572 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90222 0.92619 NaN 1 0 Median NaN NaN NaN 0 0 Median 45302000 21484000 23818000 30472000 14671000 15802000 10338000 4602400 5735700 3645000 1736600 1908500 0 0 0 846190 474250 371950 0 0 0 34944 1430 36727 183819;183820;183821;183822 186128;186129;186130;186131;186132 186129 5 VAHALAEGLGVIACIGEK RRHVFGESDELIGQKVAHALAEGLGVIACI ALAEGLGVIACIGEKLDEREAGITEKVVFE K V A E K L 4 0 0 0 1 0 2 3 1 2 2 1 0 0 0 0 0 0 0 2 0 0 18 0 1806.9662 P60174;U3KPZ0;U3KQF3 P60174 151 168 TPI1 Triosephosphate isomerase yes no 3 1.6289E-06 65.231 By MS/MS 1 0.38312 0.31799 NaN 1 Median NaN NaN NaN 0 0 Median 0.38312 0.31799 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41016000 32773000 8243800 0 0 0 41016000 32773000 8243800 0 0 0 0 0 0 0 0 0 0 0 0 34945 2523 36728 183823 186133 186133 1 VAHEPVAPPEDKESESEAK ______________________________ PVAPPEDKESESEAKVDGETASDSESRAES R V A A K V 3 0 0 1 0 0 5 0 1 0 0 2 0 0 3 2 0 0 0 2 0 0 19 1 2047.9698 O95674 O95674 8 26 CDS2 Phosphatidate cytidylyltransferase 2 yes yes 4 3.1675E-08 75.239 By matching By MS/MS 2 2 0.60139 0.87709 22.087 4 Linear 0.53233 0.56759 14.17 2 0 Median 0.75462 0.72862 25.276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6241300 3530900 2710400 1351100 832240 518890 4890200 2698700 2191500 0 0 0 0 0 0 0 0 0 0 0 0 34946 1785 36729 183824;183825;183826;183827 186134;186135 186134 2 VAHFLEK ADKVLPTIPKEQRTRVAHFLEKQGFKQQAL IPKEQRTRVAHFLEKQGFKQQALTVSTDPE R V A E K Q 1 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 842.46504 P35606 P35606 621 627 COPB2 Coatomer subunit beta yes yes 2 0.016269 84.244 By MS/MS 1 0.97567 0.85288 NaN 1 Median NaN NaN NaN 0 0 Median 0.97567 0.85288 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5416600 2832300 2584300 0 0 0 5416600 2832300 2584300 0 0 0 0 0 0 0 0 0 0 0 0 34947 2246 36730 183828 186136 186136 1 VAHHEGLIR KLEMATNKTKSWKDKVAHHEGLIRLIEPGS KSWKDKVAHHEGLIRLIEPGSKNPHLITNW K V A I R L 1 1 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1030.5672 Q9UH65;E7EMB1 Q9UH65 538 546 SWAP70 Switch-associated protein 70 yes no 2 0.017009 42.109 By MS/MS By MS/MS 1 1 1.0882 1.0046 10.653 2 Median 0.94408 0.93173 NaN 1 0 Median 1.2544 1.0832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1717700 794280 923380 526010 276540 249480 1191700 517750 673910 0 0 0 0 0 0 0 0 0 0 0 0 34948 4270 36731 183829;183830 186137;186138;186139 186138 3 VAHILNISPPLNLNPVWFK YLASKACIPYLKKSKVAHILNISPPLNLNP LNISPPLNLNPVWFKQHCAYTIAKYGMSMY K V A F K Q 1 0 3 0 0 0 0 0 1 2 3 1 0 1 3 1 0 1 0 2 0 0 19 0 2171.2255 Q6YN16 Q6YN16 145 163 HSDL2 Hydroxysteroid dehydrogenase-like protein 2 yes yes 3 0.05522 8.9317 By matching By matching By MS/MS By matching 2 2 1 1 0.79596 0.73352 21.079 6 Median 0.62311 0.60876 14.31 2 0 Median 1.0279 0.88926 19.684 2 0 Median 0.69922 0.69541 NaN 1 0 Median 0.94238 0.83842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11369000 6042300 5326600 943220 575590 367630 7698500 3872700 3825800 2652200 1554700 1097500 75080 39417 35663 0 0 0 0 0 0 34949 3195 36732 183831;183832;183833;183834;183835;183836 186140 186140 1 VAHPIRPKPPSATSIPAILK INNQPLSEEQLIDIKVAHPIRPKPPSATSI RPKPPSATSIPAILKALQDEWDAVMLHSFT K V A L K A 3 1 0 0 0 0 0 0 1 3 1 2 0 0 5 2 1 0 0 1 0 0 20 2 2092.2521 Q9UMS4;F5GY56 Q9UMS4 57 76 PRPF19 Pre-mRNA-processing factor 19 yes no 3;4;5 9.4006E-09 70.335 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 5 3 3 1 0.53244 0.61955 19.96 16 Median 0.47252 0.52801 22.639 2 0 Median 0.82451 0.84488 31.504 2 0 Median 0.45826 0.55188 8.614 5 0 Median 0.61691 0.65661 10.674 3 0 Median 0.50609 0.57893 16.409 3 0 Median 0.76712 0.69448 NaN 1 0 Median 346940000 222110000 124830000 25744000 16467000 9276800 3904100 2201000 1703100 223930000 145010000 78926000 55793000 33079000 22714000 36197000 24676000 11521000 1372500 680070 692390 34950 4334 36733 183837;183838;183839;183840;183841;183842;183843;183844;183845;183846;183847;183848;183849;183850;183851;183852 186141;186142;186143;186144;186145;186146;186147;186148;186149;186150;186151;186152;186153;186154;186155;186156;186157;186158;186159;186160;186161;186162;186163;186164;186165 186141 25 VAHRPVTQQGLTGMK GCPIGTGGVLSSQIKVAHRPVTQQGLTGMK VAHRPVTQQGLTGMKTGTKGPQRQILDKSY K V A M K T 1 1 0 0 0 2 0 2 1 0 1 1 1 0 1 0 2 0 0 2 0 0 15 1 1621.8722 Q96LB3;E5RGX6;E5RJK3;E5RIF0;E5RH29;A0A3B3IT46 Q96LB3 67 81 IFT74 Intraflagellar transport protein 74 homolog yes no 3 0.069811 10.485 By MS/MS By matching By matching 1 1 1 1.101 1.0095 27.115 3 Median 1.1722 1.1902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65813 0.7007 NaN 1 0 Median 1.101 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2605800 1247500 1358200 1205400 485790 719600 0 0 0 953190 545530 407660 447170 216200 230980 0 0 0 0 0 0 34951 3701 36734 183853;183854;183855 186166 186166 1 VAHSDKPGSTSTASFR EENRHLRDEGLRLRKVAHSDKPGSTSTASF AHSDKPGSTSTASFRDNVTSPLPSLLVVIA K V A F R D 2 1 0 1 0 0 0 1 1 0 0 1 0 1 1 4 2 0 0 1 0 0 16 1 1646.8012 Q9P0L0 Q9P0L0 206 221 VAPA Vesicle-associated membrane protein-associated protein A yes yes 3;4 0.0028347 28.212 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 6 5 3 2 2 1.1144 1.0524 12.571 20 Median 0.87923 0.86712 12.362 2 0 Median 1.1461 1.036 4.1154 6 0 Median 0.95702 1.0281 19.306 5 0 Median 1.2366 1.0946 4.8032 3 0 Median 1.0322 1.0818 2.2937 2 0 Median 1.1964 1.0953 5.6053 2 0 Median 12397000 5860100 6536800 2779200 1332200 1447000 2711700 1202400 1509300 3107800 1540100 1567700 2175700 1021400 1154300 1377900 657530 720390 244560 106580 137980 34952 4205 36735 183856;183857;183858;183859;183860;183861;183862;183863;183864;183865;183866;183867;183868;183869;183870;183871;183872;183873;183874;183875 186167;186168;186169;186170;186171;186172 186170 6 VAIAALEVLEEENLAENADK GEHGSTYGGNPLGCRVAIAALEVLEEENLA LEVLEEENLAENADKLGIILRNELMKLPSD R V A D K L 5 0 2 1 0 0 5 0 0 1 3 1 0 0 0 0 0 0 0 2 0 0 20 0 2140.0899 P04181 P04181 332 351 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 7.6513E-06 49.298 By matching By MS/MS By MS/MS 1 1 2 1.1725 1.1441 10.993 4 Median 1.3637 1.327 NaN 1 0 Median 1.2481 1.0637 NaN 1 0 Median 1.0908 1.1441 10.179 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18375000 8029800 10346000 278180 103160 175020 11508000 4762500 6745900 6588800 3164200 3424600 0 0 0 0 0 0 0 0 0 34953 1846 36736 183876;183877;183878;183879 186173;186174;186175 186173 3 VAIDASMSIYQFLIAVR SAIRENDIKSYFGRKVAIDASMSIYQFLIA IDASMSIYQFLIAVRQGGDVLQNEEGETTS K V A V R Q 3 1 0 1 0 1 0 0 0 3 1 0 1 1 0 2 0 0 1 2 0 0 17 0 1896.0179 P39748;F5H1Y3 P39748 31 47 FEN1 Flap endonuclease 1 yes no 2 0.0090407 44.188 By MS/MS 1 0.99886 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99886 1.0065 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2826600 1266100 1560600 0 0 0 0 0 0 2826600 1266100 1560600 0 0 0 0 0 0 0 0 0 34954 2283 36737 183880 186176 186176 1038 1 VAIDNTNPDAASR RCVTTCETALKQGKRVAIDNTNPDAASRAR KRVAIDNTNPDAASRARYVQCARAAGVPCR R V A S R A 3 1 2 2 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 13 0 1342.6477 M0QYH2;Q96T60;A0A0D9SFL2 M0QYH2 388 400 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.00040822 74.162 By matching By MS/MS By MS/MS 1 1 1 0.84475 0.7383 12.264 3 Median NaN NaN NaN 0 0 Median 0.84475 0.7383 NaN 1 0 Median 0.67278 0.69834 NaN 1 0 Median 1.0243 0.88307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7966400 4037200 3929200 0 0 0 2399800 1153300 1246400 4064500 2167900 1896600 1502100 715950 786180 0 0 0 0 0 0 34955 1418 36738 183881;183882;183883 186177;186178;186179;186180 186178 4 VAIDVGYR GTWKSPPGQVTEAVKVAIDVGYRHIDCAHV QVTEAVKVAIDVGYRHIDCAHVYQNENEVG K V A Y R H 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 891.48142 P15121;E9PCX2;E9PEF9 P15121 34 41 AKR1B1 Aldose reductase yes no 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS 2 1 2 1.0795 0.98507 13.621 4 Median 0.94883 0.91714 9.6288 2 0 Median 1.1889 0.9884 NaN 1 0 Median 1.211 1.1935 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 190940000 91905000 99036000 129890000 65063000 64822000 54271000 23478000 30793000 6784400 3363700 3420700 0 0 0 0 0 0 0 0 0 34956 2015 36739 183884;183885;183886;183887;183888 186181;186182;186183;186184;186185;186186;186187;186188 186186 8 VAIEHLDK IHPIRIADGYEQAARVAIEHLDKISDSVLV GYEQAARVAIEHLDKISDSVLVDIKDTEPL R V A D K I 1 0 0 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 923.50763 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 143 150 CCT5 T-complex protein 1 subunit epsilon yes no 2 0.0081187 64.207 By MS/MS By MS/MS By matching 1 2 1 1.193 1.1344 42.759 4 Median 1.1894 1.1356 NaN 1 0 Median 1.8897 1.5868 66.02 2 1 Median 1.1229 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61346000 25868000 35479000 5794800 2615400 3179400 54588000 22826000 31762000 963860 426450 537420 0 0 0 0 0 0 0 0 0 34957 2364 36740 183889;183890;183891;183892 186189;186190;186191;186192 186191 4 VAIEHLDKISDSVLVDIKDTEPLIQTAK IHPIRIADGYEQAARVAIEHLDKISDSVLV LVDIKDTEPLIQTAKTTLGSKVVNSCHRQM R V A A K T 2 0 0 4 0 1 2 0 1 4 3 3 0 0 1 2 2 0 0 3 0 0 28 2 3089.686 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 143 170 CCT5 T-complex protein 1 subunit epsilon yes no 4;5 3.7964E-44 107.23 By MS/MS By MS/MS 2 2 0.91593 0.89313 26.02 4 Median 1.1028 1.1253 37.136 2 1 Median 0.91593 0.87942 6.6427 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39518000 23282000 16236000 35035000 20686000 14349000 4483000 2596200 1886800 0 0 0 0 0 0 0 0 0 0 0 0 34958 2364 36741 183893;183894;183895;183896 186193;186194;186195 186194 3 VAIEPGAPR EKVGSSVKHLKPGDRVAIEPGAPRENDEFC LKPGDRVAIEPGAPRENDEFCKMGRYNLSP R V A P R E 2 1 0 0 0 0 1 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 9 0 908.50797 Q00796;H0YLA4 Q00796 92 100 SORD Sorbitol dehydrogenase yes no 2 0.00097881 87.323 By matching By MS/MS By matching 2 2 1 0.91879 0.79839 43.27 5 Median 0.82655 0.80787 20.707 2 0 Median 1.1936 1.0261 35.493 2 0 Median 0.3639 0.40567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9378000 4816300 4561800 2832200 1593200 1239000 5787900 2886800 2901100 758010 336380 421630 0 0 0 0 0 0 0 0 0 34959 2679 36742 183897;183898;183899;183900;183901 186196 186196 1 VAIESAVQQK MVAVPAGADPSTVAKVAIESAVQQKQQHPP STVAKVAIESAVQQKQQHPPTYVQNVVPQN K V A Q K Q 2 0 0 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 0 2 0 0 10 0 1071.5924 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1568 1577 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.0099777 85.676 By MS/MS 1 0.82204 0.91114 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82204 0.91114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8179400 4379600 3799800 0 0 0 0 0 0 8179400 4379600 3799800 0 0 0 0 0 0 0 0 0 34960 3122 36743 183902 186197 186197 0 VAIFIEK RAQRIEYDCELVPRRVAIFIEKTKDGQILP DCELVPRRVAIFIEKTKDGQILPVPNVVVR R V A E K T 1 0 0 0 0 0 1 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 7 0 818.49019 Q9P258 Q9P258 312 318 RCC2 Protein RCC2 yes yes 2 0.017772 64.757 By matching By MS/MS By MS/MS By MS/MS By matching 1 4 5 1 1 1.2352 1.0561 21.597 12 Median NaN NaN NaN 0 0 Median 1.2312 1.0505 NaN 1 0 Median 0.9728 1.0208 20.316 4 0 Median 1.3383 1.1459 14.754 5 0 Median 1.601 1.535 NaN 1 0 Median 1.7099 1.4481 NaN 1 0 Median 81944000 37425000 44519000 0 0 0 3423300 1567500 1855800 45688000 21604000 24084000 29899000 13100000 16799000 1886900 752720 1134200 1047300 401230 646030 34961 4214 36744 183903;183904;183905;183906;183907;183908;183909;183910;183911;183912;183913;183914 186198;186199;186200;186201;186202;186203;186204;186205;186206 186206 9 VAIHEAMEQQTISIAK VVCIDEFDKMREDDRVAIHEAMEQQTISIA AIHEAMEQQTISIAKAGITTTLNSRCSVLA R V A A K A 3 0 0 0 0 2 2 0 1 3 0 1 1 0 0 1 1 0 0 1 0 0 16 0 1767.9189 P33992;B1AHB1 P33992 456 471 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2;3 3.6268E-05 67.102 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 2 1.0045 0.92316 16.897 11 Median 0.96095 0.87022 10.174 3 0 Median 1.3556 1.1902 3.3906 2 0 Median 0.79647 0.85779 17.021 4 1 Median 1.087 0.94324 11.497 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84596000 40768000 43828000 22419000 11170000 11249000 19414000 7800200 11614000 33967000 17828000 16139000 8796600 3970300 4826300 0 0 0 0 0 0 34962 2224 36745;36746 183915;183916;183917;183918;183919;183920;183921;183922;183923;183924;183925 186207;186208;186209;186210;186211;186212 186209 961 6 VAIHYINPPNPAK QNKPTGFALGSIEGRVAIHYINPPNPAKDN GRVAIHYINPPNPAKDNFTFKCHRSNGTNT R V A A K D 2 0 2 0 0 0 0 0 1 2 0 1 0 0 3 0 0 0 1 1 0 0 13 0 1432.7827 P78406;E9PQ57 P78406 240 252 RAE1 mRNA export factor yes no 2;3 1.629E-15 189.13 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 0.78006 0.7404 13.152 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69024 0.71047 6.6062 3 0 Median 0.86571 0.7395 19.814 3 1 Median 0.78553 0.78658 NaN 1 0 Median 1.0192 0.83397 NaN 1 0 Median 243240000 137680000 105560000 0 0 0 0 0 0 204700000 115740000 88956000 21777000 12351000 9426700 13650000 8101400 5548900 3116200 1486400 1629800 34963 2645 36747 183926;183927;183928;183929;183930;183931;183932;183933 186213;186214;186215;186216;186217;186218;186219;186220;186221;186222;186223;186224;186225;186226;186227;186228;186229;186230;186231 186221 19 VAILAELDKEK MAANSSGQGFQNKNRVAILAELDKEKRKLL NKNRVAILAELDKEKRKLLMQNQSSTNHPG R V A E K R 2 0 0 1 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1227.7075 Q9NRY2 Q9NRY2 16 26 INIP SOSS complex subunit C yes yes 3 0.0023023 42.809 By MS/MS 1 1.1928 1.215 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1928 1.215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4357600 1478200 2879400 0 0 0 0 0 0 4357600 1478200 2879400 0 0 0 0 0 0 0 0 0 34964 4094 36748 183934 186232;186233 186233 2 VAILAQLYHEKPLVFLER CSQQQGEPDLTEHEKVAILAQLYHEKPLVF LAQLYHEKPLVFLERFRTGLREEHLACFGH K V A E R F 2 1 0 0 0 1 2 0 1 1 4 1 0 1 1 0 0 0 1 2 0 0 18 1 2138.2252 Q96F63 Q96F63 93 110 CCDC97 Coiled-coil domain-containing protein 97 yes yes 3 0.009139 23.562 By matching By MS/MS 1 1 0.73676 0.70832 44.921 2 Median NaN NaN NaN 0 0 Median 0.56411 0.51556 NaN 1 0 Median 0.96226 0.97314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4532700 2515300 2017400 0 0 0 1769800 1207800 562050 2762900 1307500 1455400 0 0 0 0 0 0 0 0 0 34965 3647 36749 183935;183936 186234 186234 1 VAIPIEDVNR IYYQVKQPRWFETVKVAIPIEDVNRSHLRF FETVKVAIPIEDVNRSHLRFTFRHRSSQDS K V A N R S 1 1 1 1 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1124.619 A0A096LNH6;Q14185 A0A096LNH6 518 527 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.0093248 86.67 By MS/MS By MS/MS 1 1 0.82189 0.80505 4.4734 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71386 0.77998 NaN 1 0 Median 0.94627 0.83092 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12253000 6405000 5847500 0 0 0 0 0 0 10016000 5372600 4643900 2236100 1032400 1203600 0 0 0 0 0 0 34966 140 36750 183937;183938 186235;186236 186235 1 VAIQLNDTHPALSIPELMR CRDPVRTCFETFPDKVAIQLNDTHPALSIP LNDTHPALSIPELMRILVDVEKVDWDKAWE K V A M R I 2 1 1 1 0 1 1 0 1 2 3 0 1 0 2 1 1 0 0 1 0 0 19 0 2117.1303 P11216 P11216 334 352 PYGB Glycogen phosphorylase, brain form yes yes 3 4.8987E-05 38.915 By MS/MS 1 0.92799 0.80252 NaN 1 Median NaN NaN NaN 0 0 Median 0.92799 0.80252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22287000 11153000 11134000 0 0 0 22287000 11153000 11134000 0 0 0 0 0 0 0 0 0 0 0 0 34967 1956 36751 183939 186237 186237 1 VAIQLNDTHPSLAIPELMR CRDPVRTNFDAFPDKVAIQLNDTHPSLAIP LNDTHPSLAIPELMRILVDLERMDWDKAWD K V A M R I 2 1 1 1 0 1 1 0 1 2 3 0 1 0 2 1 1 0 0 1 0 0 19 0 2117.1303 P11217 P11217 334 352 PYGM Glycogen phosphorylase, muscle form yes yes 2;3 0.0026194 29.328 By MS/MS 2 0.93459 0.80902 1.1404 2 Median NaN NaN NaN 0 0 Median 0.93459 0.80902 1.1404 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26367000 13269000 13098000 0 0 0 26367000 13269000 13098000 0 0 0 0 0 0 0 0 0 0 0 0 34968 1957 36752 183940;183941 186238;186239;186240 186239 3 VAIQPVNDHAPVQTISR SSGDMAWEEVRGVFRVAIQPVNDHAPVQTI IQPVNDHAPVQTISRIFHVARGGRRLLTTD R V A S R I 2 1 1 1 0 2 0 0 1 2 0 0 0 0 2 1 1 0 0 3 0 0 17 0 1843.9904 Q6UVK1 Q6UVK1 1009 1025 CSPG4 Chondroitin sulfate proteoglycan 4 yes yes 3 0.00043571 48.314 By MS/MS 1 0.48538 0.45643 NaN 1 Median 0.48538 0.45643 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9096200 5995700 3100600 9096200 5995700 3100600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34969 3186 36753 183942 186241 186241 1 VAISLGFLGGAK LSYVWPKDRPDLRARVAISLGFLGGAKAMN RARVAISLGFLGGAKAMNIVVPFMFKYAVD R V A A K A 2 0 0 0 0 0 0 3 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1131.6652 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;E9PJR8;E9PNQ5;A0A2R8Y3N2 O75027 140 151 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 0.0006333 64.04 By MS/MS By matching 1 1 1.5686 1.4538 0.91404 2 Median 1.4734 1.4633 NaN 1 0 Median 1.67 1.4445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5031000 2253100 2777900 4463200 2039800 2423300 567800 213240 354570 0 0 0 0 0 0 0 0 0 0 0 0 34970 1642 36754 183943;183944 186242;186243 186243 2 VAISNPPQR VMKMDGMTIKENIIKVAISNPPQRKVPEKP KENIIKVAISNPPQRKVPEKPETRKAPGGP K V A Q R K 1 1 1 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 9 0 980.54033 A0A499FI31;Q15020;H0YHU8 A0A499FI31 891 899 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.0068483 69.198 By MS/MS 2 1.0426 0.8794 10.581 2 Median NaN NaN NaN 0 0 Median 1.0426 0.8794 10.581 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10505000 4940900 5564200 0 0 0 10505000 4940900 5564200 0 0 0 0 0 0 0 0 0 0 0 0 34971 473 36755 183945;183946 186244;186245 186244 2 VAIVKPGVPMEIVLNK TLAVMSVDLGSESMKVAIVKPGVPMEIVLN AIVKPGVPMEIVLNKESRRKTPVIVTLKEN K V A N K E 1 0 1 0 0 0 1 1 0 2 1 2 1 0 2 0 0 0 0 4 0 0 16 1 1706.0164 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1;Q9BST8;J3QQH7;J3QLE9;J3QL06;A0A087WW13;A0A087X214 A0A087X054 47 62 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 0.017771 46.352 By MS/MS By matching 2 1 0.84949 0.8431 2.7175 2 Median 0.81758 0.85945 NaN 1 0 Median 0.88263 0.82705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7540500 3873500 3666900 6037500 3122300 2915300 1502900 751270 751640 0 0 0 0 0 0 0 0 0 0 0 0 34972 101 36756 183947;183948;183949 186246;186247;186248 186247 3 VAIYSPDGVR VFLRQLQEEDRGIDRVAIYSPDGVRVAAST RGIDRVAIYSPDGVRVAASTGIDLLLLDDF R V A V R V 1 1 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 2 0 0 10 0 1075.5662 S4R468;Q8NE86 S4R468 90 99 MCU Calcium uniporter protein, mitochondrial yes no 2 0.003055 73.985 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34973 3428 36757 183950 186249 186249 1 VAKPVVEMDGDEMTR SQEQPRRHYADKRIKVAKPVVEMDGDEMTR VAKPVVEMDGDEMTRIIWQFIKEKLILPHV K V A T R I 1 1 0 2 0 0 2 1 0 0 0 1 2 0 1 0 1 0 0 3 0 0 15 1 1675.7909 P48735;H0YL11 P48735 46 60 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes no 3 1.3701E-07 87.566 By MS/MS 1 0.58707 0.58438 NaN 1 Median 0.58707 0.58438 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21074000 11429000 9644500 21074000 11429000 9644500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34974 2367 36758 183951 186250 186250 1 VALDMTTLTIMR CRRQLDKSKLKPGTRVALDMTTLTIMRYLP GTRVALDMTTLTIMRYLPREVDPLVYNMSH R V A M R Y 1 1 0 1 0 0 0 0 0 1 2 0 2 0 0 0 3 0 0 1 0 0 12 0 1363.7203 A0A087X2I1;P62333;H0YJC0;H0YJS8 A0A087X2I1 112 123 PSMC6 26S protease regulatory subunit 10B yes no 2 0.00020783 85.377 By MS/MS By MS/MS By MS/MS 3 2 1 1.1062 1.0431 27.011 6 Median 1.0742 1.0655 6.5772 3 0 Median 0.94272 0.81572 27.822 2 0 Median 1.4412 1.5443 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34105000 15699000 18406000 15728000 7079400 8649100 16868000 7965400 8902400 1509000 654030 854940 0 0 0 0 0 0 0 0 0 34975 138 36759;36760 183952;183953;183954;183955;183956;183957 186251;186252;186253;186254;186255;186256;186257;186258;186259;186260;186261 186258 72;73 11 VALEDDGFR ISEAAKEPAKAKVQKVALEDDGFRLFFTSV KAKVQKVALEDDGFRLFFTSVPGGREKEES K V A F R L 1 1 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1020.4876 F5H7W8;Q96C57;F5H3K2;E7ENF1;F5H8B7 F5H7W8 146 154 C12orf43 Uncharacterized protein C12orf43 yes no 2 0.00086947 93.374 By MS/MS By MS/MS By matching 1 2 1 1.2156 1.1521 8.3779 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0461 1.0195 NaN 1 0 Median 1.219 1.1521 0.41166 2 1 Median NaN NaN NaN 0 0 Median 1.3684 1.2491 NaN 1 0 Median 12914000 6036400 6877500 0 0 0 0 0 0 10470000 5019300 5450600 1848700 759190 1089500 0 0 0 595320 257880 337450 34976 1045 36761 183958;183959;183960;183961 186262;186263 186262 2 VALGETQLVQEVR SQVFDHETKGSVAVRVALGETQLVQEVRRF VRVALGETQLVQEVRRFLIDNGVSLDSFSQ R V A V R R 1 1 0 0 0 2 2 1 0 0 2 0 0 0 0 0 1 0 0 3 0 0 13 0 1440.7936 Q9Y4C8 Q9Y4C8 552 564 RBM19 Probable RNA-binding protein 19 yes yes 2 0.0001147 131.82 By matching By MS/MS By MS/MS 1 1 1 1.1845 1.2331 43.131 3 Median NaN NaN NaN 0 0 Median 0.70468 0.62369 NaN 1 0 Median 1.2604 1.3862 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1845 1.2331 NaN 1 0 Median NaN NaN NaN 0 0 Median 10108000 4617600 5490300 0 0 0 613250 277360 335890 3975500 1623000 2352500 0 0 0 5519100 2717200 2801900 0 0 0 34977 4444 36762 183962;183963;183964 186264;186265 186265 2 VALGHGLK DNIQAGELTEGIWRRVALGHGLKLLTKNGH TEGIWRRVALGHGLKLLTKNGHVYKYDGFR R V A L K L 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 793.48102 Q08945 Q08945 56 63 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.052986 50.966 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 518460 0 518460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 518460 0 518460 34978 2743 36763 183965 186266 186266 1 VALGNTWK APPEGQTVLDGLEFKVALGNTWKENLTELS LDGLEFKVALGNTWKENLTELSGGQRSLVA K V A W K E 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 8 0 887.4865 O95347;A0A0C4DGE5 O95347 1072 1079 SMC2 Structural maintenance of chromosomes protein 2 yes no 2 0.012155 55.531 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.0803 1.0422 47.502 6 Median 0.69524 0.65137 NaN 1 0 Median 1.3091 1.118 1.0514 2 0 Median 1.0142 1.0991 NaN 1 1 Median 1.1508 0.98824 NaN 1 0 Median 0.33388 0.34249 NaN 1 0 Median NaN NaN NaN 0 0 Median 20457000 9809600 10648000 3340700 1976600 1364100 9169800 4061400 5108300 3843400 1867400 1976000 3428700 1471200 1957500 674660 432930 241730 0 0 0 34979 1766 36764 183966;183967;183968;183969;183970;183971 186267;186268;186269 186269 3 VALGNTWKENLTELSGGQR APPEGQTVLDGLEFKVALGNTWKENLTELS NTWKENLTELSGGQRSLVALSLILSMLLFK K V A Q R S 1 1 2 0 0 1 2 3 0 0 3 1 0 0 0 1 2 1 0 1 0 0 19 1 2072.0651 O95347;A0A0C4DGE5 O95347 1072 1090 SMC2 Structural maintenance of chromosomes protein 2 yes no 3 1.0853E-13 105.39 By MS/MS By MS/MS By matching 2 1 1 1.1792 1.2803 19.932 4 Median 1.1293 1.1749 5.3025 2 2 Median NaN NaN NaN 0 0 Median 1.1858 1.3438 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5744 1.7841 NaN 1 0 Median NaN NaN NaN 0 0 Median 18673000 8892800 9780700 7997300 3950000 4047300 0 0 0 9373700 4517900 4855800 0 0 0 1302500 424800 877690 0 0 0 34980 1766 36765 183972;183973;183974;183975 186270;186271;186272;186273 186273 4 VALIGFPSVGK SKGEGFDVMKSGDARVALIGFPSVGKSTFL GDARVALIGFPSVGKSTFLSLMTSTASEAA R V A G K S 1 0 0 0 0 0 0 2 0 1 1 1 0 1 1 1 0 0 0 2 0 0 11 0 1086.6437 P55039;A8MZF9;J3QKW7;J3KRL5;J3QR71;J3QRI9;J3QL90;J3QKV7 P55039 65 75 DRG2 Developmentally-regulated GTP-binding protein 2 yes no 2 0.0019387 56.258 By MS/MS By matching By MS/MS 1 2 2 0.9258 0.86376 14.711 5 Median 0.9258 0.86376 NaN 1 0 Median 0.92607 0.81393 8.8989 2 0 Median 0.90347 0.95092 23.276 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9750100 5073200 4676900 4234300 2212000 2022400 1768200 909430 858730 3747600 1951800 1795800 0 0 0 0 0 0 0 0 0 34981 2492 36766 183976;183977;183978;183979;183980 186274;186275;186276;186277 186274 4 VALIGSPVDLTYTYDHLGDSPK FNARIRKSWLHNDLKVALIGSPVDLTYTYD VDLTYTYDHLGDSPKILQDIASGSHPFSQV K V A P K I 1 0 0 3 0 0 0 2 1 1 3 1 0 0 2 2 2 0 2 2 0 0 22 0 2360.19 P28331;B4DJ81 P28331 429 450 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 3 2.5358E-09 53.201 By MS/MS By MS/MS By MS/MS 2 2 1 0.78298 0.83299 42.327 5 Median 0.55674 0.52741 12.561 2 0 Median 1.37 1.1926 18.238 2 0 Median 0.78298 0.83299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16064000 8741700 7322100 7264500 4414100 2850300 5420000 2346800 3073200 3379300 1980800 1398500 0 0 0 0 0 0 0 0 0 34982 2165 36767 183981;183982;183983;183984;183985 186278;186279;186280;186281;186282 186278 4 VALLDFGATR DPNWSNFFYDPQQHKVALLDFGATREYDRS PQQHKVALLDFGATREYDRSFTDLYIQIIR K V A T R E 2 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1061.5869 Q8NI60 Q8NI60 503 512 ADCK3 Atypical kinase ADCK3, mitochondrial yes yes 2 0.00047649 90.657 By MS/MS By MS/MS By matching By matching 1 3 2 1 1.1878 1.1822 45.596 7 Median 1.1878 1.185 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87274 0.90966 26.106 3 2 Median 0.92913 0.81577 98.273 2 0 Median 1.2249 1.1822 NaN 1 0 Median NaN NaN NaN 0 0 Median 16749000 8504600 8243900 3090400 1359600 1730900 0 0 0 13011000 6833900 6176700 361350 165820 195530 286140 145340 140800 0 0 0 34983 3449 36768 183986;183987;183988;183989;183990;183991;183992 186283;186284;186285;186286 186286 4 VALLDVFR SQKVELSESRLKAFKVALLDVFREAHAQSI SRLKAFKVALLDVFREAHAQSIGMNRLTES K V A F R E 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 8 0 931.5491 P25205;J3KQ69;A0A499FHX9 P25205 749 756 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0079205 65.038 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 4 5 1 1 1 1.005 1.0007 12.382 17 Median 0.99452 0.95822 11.433 5 0 Median 1.1564 1.0198 1.2151 4 0 Median 0.86832 0.92489 16.026 5 0 Median 1.216 1.0465 NaN 1 0 Median 0.93381 0.99285 NaN 1 0 Median 1.3464 1.1906 NaN 1 0 Median 59894000 27715000 32179000 13357000 6436200 6920600 36798000 16191000 20607000 7664500 4143200 3521400 1137600 481710 655900 848560 422030 426530 88334 40442 47892 34984 2129 36769 183993;183994;183995;183996;183997;183998;183999;184000;184001;184002;184003;184004;184005;184006;184007;184008;184009 186287;186288;186289;186290;186291;186292;186293 186288 7 VALLLLEK RTVALLTEKKADVEKVALLLLEKEVLDKND KKADVEKVALLLLEKEVLDKNDMVELLGPR K V A E K E 1 0 0 0 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 8 0 897.5899 I6L894;Q01484;E9PHW9;A0A0U1RQN6;B7Z651;Q9Y4W6 Q9Y4W6 726 733 ANK2;AFG3L2 Ankyrin-2;AFG3-like protein 2 no no 2 0.012861 54.157 By MS/MS 1 0.99185 0.97241 NaN 1 Median 0.99185 0.97241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2364400 1259400 1105000 2364400 1259400 1105000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34985 4449;1297 36770 184010 186294 186294 1 VALLSGGGSGHEPAHAGFIGK HRVALRSDLDSLKGRVALLSGGGSGHEPAH GGSGHEPAHAGFIGKGMLTGVIAGAVFTSP R V A G K G 3 0 0 0 0 0 1 6 2 1 2 1 0 1 1 2 0 0 0 1 0 0 21 0 1961.0119 Q3LXA3;H0YCY6;E9PJG8 Q3LXA3 49 69 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 3;4 7.9592E-09 51.566 By MS/MS By matching 2 1 1.0564 0.99747 13.161 3 Plateau 1.0275 0.95974 8.4304 2 0 Median 0.91622 0.78324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47166000 22239000 24927000 43241000 20352000 22888000 3925300 1886200 2039100 0 0 0 0 0 0 0 0 0 0 0 0 34986 3012 36771 184011;184012;184013 186295;186296;186297;186298 186295 4 VALNTLAR AEVRGPAHCLLLGERVALNTLARCSGIASA CLLLGERVALNTLARCSGIASAAAAAVEAA R V A A R C 2 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 856.51305 Q15274;C9JCJ5 Q15274 103 110 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes no 2 7.7574E-06 164 By MS/MS By MS/MS 1 1 1.3123 1.1575 38.058 2 Median 0.94534 0.88444 NaN 1 0 Median 1.8216 1.515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30709000 14843000 15866000 21745000 11622000 10124000 8963700 3220900 5742800 0 0 0 0 0 0 0 0 0 0 0 0 34987 2936 36772 184014;184015 186299;186300;186301;186302 186300 4 VALQAQIENHK KEKLAHGHLKQTKSKVALQAQIENHKVFFQ TKSKVALQAQIENHKVFFQKLVADMLLIQA K V A H K V 2 0 1 0 0 2 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1249.6779 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4770 4780 SYNE2 Nesprin-2 yes no 3 0.0086016 30.889 By MS/MS By MS/MS 1 1 1.0664 1.081 32.102 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79546 0.86146 NaN 1 0 Median 1.4297 1.3564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4711200 2522900 2188300 0 0 0 0 0 0 3510800 2031500 1479300 1200400 491410 709040 0 0 0 0 0 0 34988 3521 36773 184016;184017 186303;186304;186305;186306 186303 4 VALQDLQTNSK QVTRAVLGDDPQLMKVALQDLQTNSKIGAL QLMKVALQDLQTNSKIGALLPYFVYVVSGV K V A S K I 1 0 1 1 0 2 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 11 0 1215.6459 Q9Y6J9 Q9Y6J9 178 188 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 2 0.0018485 79.148 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34989 4494 36774 184018;184019 186307;186308 186307 2 VALQWMVK NVVKKAILTMTQLYKVALQWMVKSRVISEL TMTQLYKVALQWMVKSRVISELQEACWDMV K V A V K S 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 2 0 0 8 0 973.54191 Q92797;A0A087WUE9;M0R3C7 Q92797 139 146 SYMPK Symplekin yes no 2 0.0036575 86.086 By MS/MS By matching By matching 1 2 1 1.1892 1.0571 11.799 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94094 1.0153 NaN 1 0 Median 1.2148 1.0442 7.4331 2 0 Median 1.2525 1.2867 NaN 1 0 Median NaN NaN NaN 0 0 Median 7289200 3620400 3668700 0 0 0 0 0 0 6031200 2984800 3046500 738170 354400 383770 519810 281290 238520 0 0 0 34990 3558 36775 184020;184021;184022;184023 186309;186310 186310 2 VALRGEDVPLTEQTVSQVLQSAK GGVILESDPQQVVHRVALRGEDVPLTEQTV PLTEQTVSQVLQSAKEQIKWSLLR______ R V A A K E 2 1 0 1 0 3 2 1 0 0 3 1 0 0 1 2 2 0 0 4 0 0 23 1 2467.3282 F8VVA7;P61923;F8W651;F8VYK5 F8VVA7 167 189 COPZ1 Coatomer subunit zeta-1 yes no 3 0.00010031 31.27 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.0611 0.89647 61.614 5 Median 0.88772 0.87994 NaN 1 0 Median 1.0161 0.89647 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1228 0.99388 NaN 1 0 Median 3.1633 3.5598 NaN 1 0 Median 1.0611 0.84888 NaN 1 0 Median 7253500 2862100 4391500 2289200 1120500 1168700 1917200 897140 1020000 0 0 0 210390 101600 108780 2422800 536990 1885800 413960 205870 208090 34991 1067 36776 184024;184025;184026;184027;184028 186311;186312;186313 186311 3 VALSEPQPER AEIISLCKRYPGFMRVALSEPQPERRFFRR PGFMRVALSEPQPERRFFRRGWVTFDRSVN R V A E R R 1 1 0 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1124.5826 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 450 459 SRRT Serrate RNA effector molecule homolog yes no 2 0.0022775 76.221 By MS/MS 1 0.81691 0.87471 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81691 0.87471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4015400 2092900 1922500 0 0 0 0 0 0 4015400 2092900 1922500 0 0 0 0 0 0 0 0 0 34992 3879 36777 184029 186314 186314 1 VALSEPQPERR AEIISLCKRYPGFMRVALSEPQPERRFFRR GFMRVALSEPQPERRFFRRGWVTFDRSVNI R V A R R F 1 2 0 0 0 1 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 11 1 1280.6837 Q9BXP5;H7C3A1;H7C1K0 Q9BXP5 450 460 SRRT Serrate RNA effector molecule homolog yes no 3 0.00017938 64.439 By matching By MS/MS By MS/MS By matching By MS/MS 1 3 3 1 1 0.9723 1.0225 28.49 8 Median 1.2519 1.2403 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82159 0.94933 16.947 3 1 Median 1.0044 0.93497 23.161 2 1 Median 1.3693 1.5315 NaN 1 0 Median 0.6929 0.62637 NaN 1 0 Median 10035000 5379600 4655600 1743200 777750 965410 0 0 0 5695800 3282200 2413600 1516300 781470 734870 179710 101360 78348 900160 436760 463400 34993 3879 36778 184030;184031;184032;184033;184034;184035;184036;184037;184038 186315;186316;186317;186318;186319;186320 186316 6 VALSHHLVAR ALAVSTKYHGPKALKVALSHHLVARVYESK PKALKVALSHHLVARVYESKAEFRSALQHE K V A A R V 2 1 0 0 0 0 0 0 2 0 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1101.6407 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 1145 1154 CLUH Clustered mitochondria protein homolog yes no 2 0.0011713 67.897 By matching By MS/MS 1 1 1.4791 1.3616 69.363 2 Median 2.2448 2.2236 NaN 1 0 Median 0.97456 0.83376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2652800 1275100 1377700 374360 86953 287400 2278400 1188100 1090300 0 0 0 0 0 0 0 0 0 0 0 0 34994 1651 36779 184039;184040 186321 186321 1 VALSNMNVIDR IKATFDISLVVPKDRVALSNMNVIDRKPYP PKDRVALSNMNVIDRKPYPDDENLVEVKFA R V A D R K 1 1 2 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 2 0 0 11 0 1230.6391 E9PLK3;P55786;A6NEC2 E9PLK3 207 217 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.00011336 127.4 By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1.0344 1.0324 65.922 8 Median 0.79487 0.76331 26.464 2 0 Median 1.1215 0.9706 91.85 4 1 Median 1.1164 1.1893 NaN 1 0 Median 1.3506 1.1598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124080000 65637000 58443000 72039000 37353000 34686000 44728000 24999000 19730000 6393600 2847400 3546200 918670 438000 480670 0 0 0 0 0 0 34995 960 36780;36781 184041;184042;184043;184044;184045;184046;184047;184048 186322;186323;186324;186325;186326;186327;186328;186329 186323 339 8 VALSPAGVQNLVK LTVGVPKEIFQNEKRVALSPAGVQNLVKQG KRVALSPAGVQNLVKQGFNVVVESGAGEAS R V A V K Q 2 0 1 0 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 3 0 0 13 0 1294.7609 Q13423;A0A590UK15;A0A590UJM2;A0A590UK29;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7 Q13423 72 84 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 7.268E-07 103.7 By MS/MS By MS/MS By MS/MS 2 2 1 0.82091 0.79125 52.086 5 Median 0.77109 0.7587 5.9412 2 0 Median 1.8099 1.6154 53.918 2 0 Median 0.60711 0.65545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 118530000 60863000 57665000 74036000 40990000 33046000 40408000 17286000 23122000 4084400 2586800 1497500 0 0 0 0 0 0 0 0 0 34996 2814 36782 184049;184050;184051;184052;184053 186330;186331;186332;186333;186334;186335;186336;186337;186338 186331 9 VALSSETEVALAR ANDIISSTEISSAEKVALSSETEVALARDM EKVALSSETEVALARDMTLPPETNVILTKD K V A A R D 3 1 0 0 0 0 2 0 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1344.7249 E7EVA0;P27816 E7EVA0 453 465 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 2.5356E-30 182.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 4 4 2 1 1.2582 1.1071 39.838 18 Median 0.97978 0.93144 28.143 4 2 Median 1.2646 1.0644 41.911 3 1 Median 1.4155 1.5295 49.475 4 2 Median 1.2446 1.0623 30.419 4 0 Median 1.308 1.3795 71.131 2 1 Median 1.8204 1.4775 NaN 1 0 Median 183870000 78320000 105550000 59359000 28408000 30952000 9363400 4078400 5285100 76663000 28634000 48029000 31100000 13871000 17229000 5353900 2898200 2455700 2030600 430740 1599800 34997 895 36783 184054;184055;184056;184057;184058;184059;184060;184061;184062;184063;184064;184065;184066;184067;184068;184069;184070;184071 186339;186340;186341;186342;186343;186344;186345;186346;186347;186348;186349;186350;186351;186352;186353;186354;186355;186356;186357;186358;186359 186342 21 VALTGLTVAEYFR LVYGQMNEPPGARARVALTGLTVAEYFRDQ ARVALTGLTVAEYFRDQEGQDVLLFIDNIF R V A F R D 2 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 2 0 1 2 0 0 13 0 1438.782 P06576;H0YH81;F8W0P7 P06576 282 294 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 1.885E-06 138.25 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 1.0863 1.0373 17.802 8 Median 1.0771 1.0203 16.602 3 1 Median 1.3523 1.1326 25.257 3 0 Plateau 0.86008 0.90623 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4218 1.1599 NaN 1 0 Median 79099000 34545000 44554000 23649000 11336000 12313000 53324000 22144000 31180000 1700300 865400 834900 0 0 0 0 0 0 425750 199740 226010 34998 1872 36784 184072;184073;184074;184075;184076;184077;184078;184079 186360;186361;186362;186363;186364;186365;186366;186367;186368;186369;186370;186371;186372 186370 13 VALVNDSLSDVTSTTSSR DVQATGRIADDADPRVALVNDSLSDVTSTT VNDSLSDVTSTTSSRVDDHDSEEICLDHLC R V A S R V 1 1 1 2 0 0 0 0 0 0 2 0 0 0 0 5 3 0 0 3 0 0 18 0 1850.9222 Q7Z2W4 Q7Z2W4 486 503 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes yes 2 1.9914E-12 132.47 By MS/MS By matching 2 1 1.2199 1.134 2.3789 3 Median 1.1669 1.1546 3.0284 2 0 Median 1.2588 1.134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6758400 3144100 3614200 6471900 3034900 3437000 286480 109240 177230 0 0 0 0 0 0 0 0 0 0 0 0 34999 3236 36785 184080;184081;184082 186373 186373 1 VALVTFNSAAHNKPSLIR DFLKTLEDPDLNVRRVALVTFNSAAHNKPS VTFNSAAHNKPSLIRDLLDTVLPHLYNETK R V A I R D 3 1 2 0 0 0 0 0 1 1 2 1 0 1 1 2 1 0 0 2 0 0 18 1 1937.0847 Q86VP6;A0A0C4DGH5 Q86VP6 1025 1042 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2;3;4 8.9693E-19 178.32 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 3 3 2 1 1 0.94944 0.96876 16.858 15 Median 0.92718 0.96876 19.005 5 0 Median 1.0693 0.96596 13.232 3 0 Plateau 0.81921 0.92992 4.1676 3 0 Plateau 1.0961 1.0533 5.5496 2 0 Median 1.2852 1.4162 NaN 1 0 Median 1.1576 1.0293 NaN 1 0 Median 309670000 162320000 147350000 136100000 70384000 65721000 24051000 12163000 11888000 130060000 70947000 59109000 13573000 6626900 6946500 3890100 1403500 2486500 1996700 800860 1195800 35000 3288 36786 184083;184084;184085;184086;184087;184088;184089;184090;184091;184092;184093;184094;184095;184096;184097 186374;186375;186376;186377;186378;186379;186380;186381;186382;186383;186384;186385;186386;186387;186388;186389 186379 16 VALVVHPGTAR LRQGDDSSDEEDKERVALVVHPGTARLGSP DKERVALVVHPGTARLGSPDEEFFHKVRTI R V A A R L 2 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 3 0 0 11 0 1118.656 Q12846;C9JFM5;H3BMK2;A0A087WWW0 Q12846 23 33 STX4 Syntaxin-4 yes no 2 0.034503 47.198 By MS/MS 1 0.7542 0.72617 NaN 1 Median 0.7542 0.72617 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2669200 1438200 1231000 2669200 1438200 1231000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35001 2764 36787 184098 186390 186390 1 VALVYGQMNEPPGAR MIESGVINLKDATSKVALVYGQMNEPPGAR VALVYGQMNEPPGARARVALTGLTVAEYFR K V A A R A 2 1 1 0 0 1 1 2 0 0 1 0 1 0 2 0 0 0 1 2 0 0 15 0 1600.8032 P06576;H0YH81;F8W0P7 P06576 265 279 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 5.2029E-10 162.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 3 1 0.77714 0.76204 58.855 14 Median 0.75283 0.71153 61.891 5 1 Median 1.0039 0.84309 86.098 3 0 Median 0.7547 0.76204 0.084284 2 2 Median 1.1988 1.0395 52.661 3 0 Plateau 1.3636 1.3671 NaN 1 0 Median NaN NaN NaN 0 0 Median 311330000 159910000 151420000 251510000 128260000 123250000 24296000 12386000 11911000 22806000 13508000 9297300 4669900 2391200 2278700 8050300 3366400 4683900 0 0 0 35002 1872 36788;36789 184099;184100;184101;184102;184103;184104;184105;184106;184107;184108;184109;184110;184111;184112 186391;186392;186393;186394;186395;186396;186397;186398;186399;186400;186401;186402;186403;186404;186405;186406;186407;186408;186409;186410;186411;186412;186413;186414;186415;186416 186397 633 26 VAMANIQPQMLVAGATSIAR DASEEAIKKDLDKCKVAMANIQPQMLVAGA IQPQMLVAGATSIARRANRILLVAKREVEN K V A A R R 5 1 1 0 0 2 0 1 0 2 1 0 2 0 1 1 1 0 0 2 0 0 20 0 2041.0813 P18206 P18206 739 758 VCL Vinculin yes yes 2;3 1.8846E-08 78.763 By MS/MS By MS/MS 3 2 0.89486 0.85021 4.9985 5 Median 0.88258 0.85342 3.2145 3 0 Median 0.9392 0.81315 6.3033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18287000 9331900 8954700 13636000 6990700 6645600 4650300 2341200 2309100 0 0 0 0 0 0 0 0 0 0 0 0 35003 2057 36790 184113;184114;184115;184116;184117 186417;186418;186419;186420;186421;186422 186419 6 VAMCVLSSPHGR GQTIRQLISAHVLRRVAMCVLSSPHGRRQH LRRVAMCVLSSPHGRRQHLAVSHEKGKITV R V A G R R 1 1 0 0 1 0 0 1 1 0 1 0 1 0 1 2 0 0 0 2 0 0 12 0 1312.638 Q5T4S7;A0A0A0MSW0 Q5T4S7 1897 1908 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 0.0020236 57.003 By MS/MS 1 3.1906 2.5532 NaN 1 Median NaN NaN NaN 0 0 Median 3.1906 2.5532 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21134000 4870700 16264000 0 0 0 21134000 4870700 16264000 0 0 0 0 0 0 0 0 0 0 0 0 35004 3089 36791 184118 186423 186423 1 VAMFLTDSNNIK YGLPPTAGWGMGIDRVAMFLTDSNNIKEVL IDRVAMFLTDSNNIKEVLLFPAMKPEDKKE R V A I K E 1 0 2 1 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 12 0 1351.6806 Q15046 Q15046 554 565 KARS Lysine--tRNA ligase yes yes 2 4.2972E-06 163.32 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.1304 1.0017 10.407 4 Median 1.1976 1.1053 15.085 2 0 Median 1.2012 1.0063 NaN 1 0 Median 0.90384 0.99712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54781000 27071000 27710000 30829000 14747000 16082000 11107000 4950000 6156900 12846000 7373800 5471900 0 0 0 0 0 0 0 0 0 35005 2919 36792 184119;184120;184121;184122;184123;184124 186424;186425;186426;186427;186428;186429;186430 186427 7 VAMIDETR TLRARFYAVQKLARRVAMIDETRNSLYQYF VQKLARRVAMIDETRNSLYQYFLSYLQSLL R V A T R N 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 933.45897 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 645 652 IMMT MICOS complex subunit MIC60 yes no 2 0.0034039 98.299 By MS/MS By MS/MS By MS/MS 1 1 1 1.3003 1.0571 22.243 3 Median 1.1081 1.0487 NaN 1 0 Median 1.7909 1.5477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3003 1.0571 NaN 1 1 Median 18809000 7902300 10906000 8292000 4037900 4254000 8164200 2881600 5282600 0 0 0 0 0 0 0 0 0 2352400 982740 1369600 35006 3001 36793 184125;184126;184127 186431;186432;186433;186434 186432 4 VAMNILNSGR IPVENILGEVGDGFKVAMNILNSGRFSMGS GDGFKVAMNILNSGRFSMGSVVAGLLKRLI K V A G R F 1 1 2 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 10 0 1073.5652 Q9H845;H0Y8Z9 Q9H845 295 304 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.00025298 113.62 By MS/MS By MS/MS 1 1 1.8327 1.5856 NaN 1 Median NaN NaN NaN 0 0 Median 1.8327 1.5856 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10268000 3761000 6506800 0 0 0 10268000 3761000 6506800 0 0 0 0 0 0 0 0 0 0 0 0 35007 3988 36794 184128;184129 186435;186436 186435 2 VAMQDATAQMAMLQFISSGLSK EIERGKSYLRLRPDRVAMQDATAQMAMLQF AQMAMLQFISSGLSKVAVPSTIHCDHLIEA R V A S K V 4 0 0 1 0 3 0 1 0 1 2 1 3 1 0 3 1 0 0 1 0 0 22 0 2327.1324 A2A274;Q99798 A2A274 96 117 ACO2 Aconitate hydratase, mitochondrial yes no 2;3 0.00079038 27.969 By MS/MS 2 1.0152 0.94692 2.3808 2 Median 1.0152 0.94692 2.3808 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12909000 6276200 6633000 12909000 6276200 6633000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35008 495 36795 184130;184131 186437;186438;186439 186439 3 VAMSHFEPNEYIHYDLLEK VRQYHVASVLCQRAKVAMSHFEPNEYIHYD HFEPNEYIHYDLLEKNINIVRKRLNRPLTL K V A E K N 1 0 1 1 0 0 3 0 2 1 2 1 1 1 1 1 0 0 2 1 0 0 19 0 2334.0991 A2A274;Q99798 A2A274 32 50 ACO2 Aconitate hydratase, mitochondrial yes no 3;4 4.2759E-05 40.349 By MS/MS By matching 2 1 1.1683 1.0286 23 3 Median 0.9767 0.91918 31.203 2 0 Median 1.1683 1.0286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12999000 6364900 6634000 10106000 5114700 4991200 2892900 1250200 1642800 0 0 0 0 0 0 0 0 0 0 0 0 35009 495 36796 184132;184133;184134 186440;186441 186440 2 VAMTAEACSR TFENIVCVLNREVERVAMTAEACSRQHRLD REVERVAMTAEACSRQHRLDQDKIEALSSK R V A S R Q 3 1 0 0 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 10 0 1094.4849 Q12933 Q12933 296 305 TRAF2 TNF receptor-associated factor 2 yes yes 2 0.0039125 55.064 By MS/MS 1 1.1859 1.027 NaN 1 Median NaN NaN NaN 0 0 Median 1.1859 1.027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1773500 815390 958080 0 0 0 1773500 815390 958080 0 0 0 0 0 0 0 0 0 0 0 0 35010 2772 36797 184135 186442;186443 186442 2 VANAESLNAIGVLIYMDQTK SIVIVRAGKITFAEKVANAESLNAIGVLIY SLNAIGVLIYMDQTKFPIVNAELSFFGHAH K V A T K F 3 0 2 1 0 1 1 1 0 2 2 1 1 0 0 1 1 0 1 2 0 0 20 0 2149.1089 P02786;G3V0E5 P02786 268 287 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 1.2725E-05 48.14 By MS/MS 1 0.86486 0.77752 NaN 1 Median NaN NaN NaN 0 0 Median 0.86486 0.77752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 934820 486060 448760 0 0 0 934820 486060 448760 0 0 0 0 0 0 0 0 0 0 0 0 35011 1836 36798 184136 186444 186444 1 VANASYYR RLYLVSDVLYNSSAKVANASYYRKFFETKL LYNSSAKVANASYYRKFFETKLCQIFSDLN K V A Y R K 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 1 0 0 8 0 942.45593 O15042;E7ET15 O15042 609 616 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.042262 36.395 By MS/MS 1 0.79952 0.85836 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79952 0.85836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 754970 429800 325160 0 0 0 0 0 0 754970 429800 325160 0 0 0 0 0 0 0 0 0 35012 1515 36799 184137 186445 186445 1 VANEAEFILSR EGRLLSQTMKDHLVRVANEAEFILSRQRAE HLVRVANEAEFILSRQRAEDIHRHAEFESL R V A S R Q 2 1 1 0 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 11 0 1247.651 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1895 1905 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.00011296 126.31 By MS/MS By MS/MS 1 1 0.89646 0.8038 4.3756 2 Median 0.8526 0.82906 NaN 1 0 Median 0.94257 0.77931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29227000 14671000 14556000 21876000 11030000 10847000 7350800 3641500 3709300 0 0 0 0 0 0 0 0 0 0 0 0 35013 470 36800 184138;184139 186446;186447;186448 186446 3 VANEPVLAFTQGSPER WTGAGLRWKHTSSLKVANEPVLAFTQGSPE ANEPVLAFTQGSPERDALQKALKDLKGRME K V A E R D 2 1 1 0 0 1 2 1 0 0 1 0 0 1 2 1 1 0 0 2 0 0 16 0 1713.8686 P30038;Q5TF55 P30038 32 47 ALDH4A1 Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial yes no 2 0.00010428 70.488 By MS/MS By matching 2 1 0.83003 0.73246 14.104 3 Median 0.72756 0.72108 19.905 2 0 Median 0.87353 0.73246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6212100 3523900 2688100 5755900 3282500 2473400 456180 241440 214750 0 0 0 0 0 0 0 0 0 0 0 0 35014 2177 36801 184140;184141;184142 186449 186449 1 VANPSGNLTETYVQDR ARALTQTGGPHVKARVANPSGNLTETYVQD ANPSGNLTETYVQDRGDGMYKVEYTPYEEG R V A D R G 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 2 0 1 2 0 0 16 0 1762.8486 P21333;Q60FE5;A0A087WWY3 P21333 1297 1312 FLNA Filamin-A no no 2;3 7.7193E-106 226.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 4 2 1 0.90642 0.92123 23.495 20 Median 1.0009 0.94355 5.3908 3 2 Median 0.85791 0.73317 4.6745 5 0 Median 0.96801 1.0186 25.636 5 0 Median 1.0155 0.88408 25.955 4 0 Median 1.0054 1.0429 20.152 2 0 Median 0.88797 0.73727 NaN 1 0 Median 1108400000 547180000 561250000 530760000 248550000 282210000 388090000 204050000 184040000 123060000 62201000 60858000 32276000 16952000 15323000 30530000 13384000 17147000 3709700 2043200 1666500 35015 2088;3120 36802 184143;184144;184145;184146;184147;184148;184149;184150;184151;184152;184153;184154;184155;184156;184157;184158;184159;184160;184161;184162;184163 186450;186451;186452;186453;186454;186455;186456;186457;186458;186459;186460;186461;186462;186463;186464;186465;186466;186467;186468;186469;186470;186471;186472;186473;186474;186475;186476;186477;186478;186479;186480;186481;186482 186452 33 VANPSGNLTETYVQDRGDGMYK ARALTQTGGPHVKARVANPSGNLTETYVQD LTETYVQDRGDGMYKVEYTPYEEGLHSVDV R V A Y K V 1 1 2 2 0 1 1 3 0 0 1 1 1 0 1 1 2 0 2 2 0 0 22 1 2414.1172 P21333;Q60FE5;A0A087WWY3 P21333 1297 1318 FLNA Filamin-A no no 3 2.0383E-14 86.748 By MS/MS 2 0.96524 0.98861 10.263 2 Median 0.96524 0.98861 10.263 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24594000 11706000 12888000 24594000 11706000 12888000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35016 2088;3120 36803 184164;184165 186483;186484;186485;186486 186483 4 VANQIKEEEEK RAHTSSTQLQEELEKVANQIKEEEEKQVVE ELEKVANQIKEEEEKQVVEAEKVVESPDFS K V A E K Q 1 0 1 0 0 1 4 0 0 1 0 2 0 0 0 0 0 0 0 1 0 0 11 1 1315.662 Q9Y6Y8 Q9Y6Y8 905 915 SEC23IP SEC23-interacting protein yes yes 2;3 4.7049E-05 88.596 By matching By MS/MS 1 2 1.0008 0.87126 13.925 3 Plateau 0.81742 0.87126 NaN 1 0 Median 1.0008 0.93429 18.849 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6230200 3032100 3198000 196730 97214 99514 6033400 2934900 3098500 0 0 0 0 0 0 0 0 0 0 0 0 35017 4502 36804 184166;184167;184168 186487;186488;186489 186488 3 VANTSTQTMGPR RPASSQVPRVMSTQRVANTSTQTMGPRPAA TQRVANTSTQTMGPRPAAAAAAATPAVRTV R V A P R P 1 1 1 0 0 1 0 1 0 0 0 0 1 0 1 1 3 0 0 1 0 0 12 0 1261.6085 P11940;E7EQV3;E7ERJ7;H0YB75;H0YAS6;H0YAW6 P11940 482 493 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein yes no 2 0.013929 35.511 By matching By MS/MS By matching 2 2 1 0.93472 0.97975 25.1 5 Median 0.84505 0.87613 15.808 2 0 Median 0.93514 0.83428 39.813 2 0 Median 1.0992 1.1397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8118300 4004800 4113500 4386000 2179600 2206500 2700800 1365500 1335300 1031500 459780 571740 0 0 0 0 0 0 0 0 0 35018 1973 36805 184169;184170;184171;184172;184173 186490 186490 1 VANVELYYR TDAWKEGQFKDIITKVANVELYYRAIQFYL KDIITKVANVELYYRAIQFYLEFKPLLLND K V A Y R A 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 9 0 1125.5819 A0A087WVQ6;Q00610;J3KS13 A0A087WVQ6 1402 1410 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 2.3638E-16 190.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 3 2 2 3 1.2707 1.2112 15.966 21 Median 1.2855 1.2544 16.552 5 0 Median 1.2883 1.1237 17.828 6 1 Median 0.99712 1.0961 11.875 3 0 Median 1.4564 1.2746 20.579 2 0 Median 1.1842 1.2177 0.75629 2 1 Median 1.3832 1.1618 18.271 3 0 Median 486670000 209630000 277040000 222090000 93591000 128500000 168300000 71063000 97242000 59143000 29230000 29913000 14120000 5555600 8564700 18024000 8318000 9706200 4991700 1874500 3117200 35019 44 36806 184174;184175;184176;184177;184178;184179;184180;184181;184182;184183;184184;184185;184186;184187;184188;184189;184190;184191;184192;184193;184194 186491;186492;186493;186494;186495;186496;186497;186498;186499;186500;186501;186502;186503;186504;186505;186506;186507;186508;186509;186510;186511;186512;186513;186514;186515 186492 24 VANVPNTSLLVNIPQPTPASLK VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ SLLVNIPQPTPASLKGTTATSAQANSTPTS R V A L K G 2 0 3 0 0 1 0 0 0 1 3 1 0 0 4 2 2 0 0 3 0 0 22 0 2272.2791 Q86YP4 Q86YP4 294 315 GATAD2A Transcriptional repressor p66-alpha yes yes 2;3 1.304E-05 38.787 By MS/MS By matching By matching 2 1 1 0.51679 0.49627 10.515 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51679 0.54189 2.8082 2 0 Median 0.53679 0.46359 NaN 1 0 Median 0.43208 0.44422 NaN 1 0 Median NaN NaN NaN 0 0 Median 11128000 7144000 3983700 0 0 0 0 0 0 9415800 5890600 3525200 190150 121000 69151 1521700 1132400 389360 0 0 0 35020 3309 36807 184195;184196;184197;184198 186516;186517;186518;186519;186520 186519 5 VANVSAAEDSVSQR SMIQQLATYCARDVRVANVSAAEDSVSQRA RVANVSAAEDSVSQRAVLMEKPDVVVGTPS R V A Q R A 3 1 1 1 0 1 1 0 0 0 0 0 0 0 0 3 0 0 0 3 0 0 14 0 1431.6954 Q9NY93;G3V0G3;H7C3E9;F8WDT8 Q9NY93 115 128 DDX56 Probable ATP-dependent RNA helicase DDX56 yes no 2 1.8785E-07 113.22 By MS/MS By MS/MS By MS/MS 1 3 3 0.80785 0.78804 18.843 7 Median NaN NaN NaN 0 0 Median 1.1901 1.0324 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76729 0.76324 9.5877 3 2 Median 0.99085 0.852 21.997 3 3 Plateau 45826000 23946000 21879000 0 0 0 2925200 1373600 1551600 0 0 0 0 0 0 30396000 16368000 14028000 12504000 6204500 6299900 35021 4173 36808 184199;184200;184201;184202;184203;184204;184205 186521;186522;186523;186524;186525;186526 186521 6 VANVSLLALYK HAVGDIPGVRFKVVKVANVSLLALYKGKKE KVVKVANVSLLALYKGKKERPRS_______ K V A Y K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 11 0 1189.7071 P62266 P62266 125 135 RPS23 40S ribosomal protein S23 yes yes 2 0.00013837 99.802 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 5 3 2 1 5 2 1.2472 1.1963 19.343 18 Median 1.1904 1.1885 9.752 5 0 Median 1.2397 1.0592 19.27 3 0 Plateau 1.2445 1.1778 6.2645 2 0 Median 1.457 1.1998 NaN 1 0 Median 1.2547 1.4082 20.039 5 0 Median 1.4315 1.2245 3.6978 2 0 Median 279170000 125280000 153890000 213050000 96910000 116140000 20940000 9154700 11785000 27613000 11904000 15709000 528190 213630 314560 15075000 6276900 8797800 1964200 818060 1146100 35022 2577 36809 184206;184207;184208;184209;184210;184211;184212;184213;184214;184215;184216;184217;184218;184219;184220;184221;184222;184223 186527;186528;186529;186530;186531;186532;186533;186534;186535;186536;186537;186538;186539;186540;186541 186530 15 VAPAEPQEAPDSTAAGGSASK PNVAAVSITGRKRSRVAPAEPQEAPDSTAA QEAPDSTAAGGSASKRMALVLERVCSTLLG R V A S K R 6 0 0 1 0 1 2 2 0 0 0 1 0 0 3 3 1 0 0 1 0 0 21 0 1939.9123 Q3LXA3;H0YCY6;I3L252 Q3LXA3 352 372 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 2 0.021945 32.275 By MS/MS By MS/MS 1 1 0.66027 0.60581 22.929 2 Median 0.53183 0.51514 NaN 1 1 Median 0.81971 0.71244 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2249700 1439500 810270 1179800 717920 461870 1070000 721550 348400 0 0 0 0 0 0 0 0 0 0 0 0 35023 3012 36810 184224;184225 186542;186543 186542 2 VAPAEPQEAPDSTAAGGSASKR PNVAAVSITGRKRSRVAPAEPQEAPDSTAA EAPDSTAAGGSASKRMALVLERVCSTLLGL R V A K R M 6 1 0 1 0 1 2 2 0 0 0 1 0 0 3 3 1 0 0 1 0 0 22 1 2096.0134 Q3LXA3;H0YCY6;I3L252 Q3LXA3 352 373 DAK;TKFC Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) yes no 3 0.0089521 19.693 By MS/MS 1 0.61609 0.62415 NaN 1 Median 0.61609 0.62415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2193300 1410100 783210 2193300 1410100 783210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35024 3012 36811 184226 186544 186544 1 VAPAPAAADAEVEQTDAESK GAETMAAEAESAQTRVAPAPAAADAEVEQT AAADAEVEQTDAESKDAVPTE_________ R V A S K D 7 0 0 2 0 1 3 0 0 0 0 1 0 0 2 1 1 0 0 2 0 0 20 0 1968.9276 O43823 O43823 667 686 AKAP8 A-kinase anchor protein 8 yes yes 2 3.0366E-10 92.063 By MS/MS By matching 1 1 0.59879 0.58545 3.5413 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51951 0.57097 NaN 1 0 Median 0.69017 0.6003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7454400 5284300 2170100 0 0 0 0 0 0 6407600 4680400 1727200 1046800 603930 442870 0 0 0 0 0 0 35025 1596 36812 184227;184228 186545 186545 1 VAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR GRITKKDIDSFVPSKVAPAPAAVVPPTGPG VPTGVFTDIPISNIRRVIAQRLMQSKQTIP K V A I R R 5 1 1 1 0 0 0 3 0 3 0 0 1 1 8 1 3 0 0 5 0 0 33 0 3208.7318 P10515;H0YDD4;E9PEJ4 P10515 397 429 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 3 0.0027889 27.165 By MS/MS 1 0.24285 0.23854 NaN 1 Median 0.24285 0.23854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3914700 3429300 485440 3914700 3429300 485440 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35026 1938 36813 184229 186546;186547 186547 2 VAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K V A V K K 3 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 3 0 0 9 0 850.52764 P62424;Q5T8U3 P62424 12 20 RPL7A 60S ribosomal protein L7a yes no 2 0.0017007 78.616 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 4 0.87917 0.77446 6.3782 10 Median 0.79774 0.72619 NaN 1 0 Median 0.89259 0.7499 NaN 1 0 Median 0.86596 0.8362 NaN 1 0 Median 0.93624 0.78585 NaN 1 0 Median 0.77322 0.77914 0.32358 2 0 Median 0.9177 0.76877 8.7522 4 0 Median 53494000 28107000 25386000 18355000 9698900 8656100 12320000 6282800 6037500 1684800 981130 703680 7409300 3935500 3473700 7902400 4288600 3613800 5821800 2920400 2901500 35027 2589 36814 184230;184231;184232;184233;184234;184235;184236;184237;184238;184239 186548;186549;186550;186551;186552;186553;186554;186555;186556;186557;186558;186559;186560;186561;186562;186563;186564 186553 17 VAPAQPSEEGPGR SSDTEQQSPTSGGGKVAPAQPSEEGPGRKD GKVAPAQPSEEGPGRKDENKVDGMNAPKGQ K V A G R K 2 1 0 0 0 1 2 2 0 0 0 0 0 0 3 1 0 0 0 1 0 0 13 0 1293.6313 E7EX17;P23588 E7EX17 517 529 EIF4B Eukaryotic translation initiation factor 4B yes no 2 0.0017637 50.284 By matching By MS/MS By matching 1 1 1 0.58629 0.68423 19.307 3 Plateau 0.51503 0.51212 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66793 0.70463 NaN 1 0 Median 0.58629 0.49761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5241400 3071500 2169900 1034700 634910 399750 0 0 0 3770900 2161100 1609800 435840 275500 160340 0 0 0 0 0 0 35028 904 36815 184240;184241;184242 186565;186566 186565 2 VAPDEHPILLTEAPLNPK DMEKIWYHTFYNELRVAPDEHPILLTEAPL DEHPILLTEAPLNPKINREKMTQIMFEAFN R V A P K I 2 0 1 1 0 0 2 0 1 1 3 1 0 0 4 0 1 0 0 1 0 0 18 0 1953.0571 Q562R1 Q562R1 97 114 ACTBL2 Beta-actin-like protein 2 yes yes 3 1.7733E-06 60.209 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 0.56909 0.50573 12.418 6 Median 0.51609 0.48074 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45906 0.43851 NaN 1 0 Median 0.6475 0.57196 1.9655 2 0 Median 0.45617 0.43714 NaN 1 0 Median 0.66637 0.53202 NaN 1 0 Median 754670000 453440000 301230000 28730000 17725000 11005000 0 0 0 54184000 36014000 18169000 468560000 269870000 198690000 125290000 85375000 39917000 77911000 44456000 33455000 35029 3035 36816 184243;184244;184245;184246;184247;184248 186567;186568;186569;186570;186571;186572 186568 6 VAPEEHPILLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPILLTEAPL EEHPILLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 1 3 1 0 0 4 0 1 0 0 1 0 0 18 0 1967.0728 Q6S8J3;P0CG38;P0CG39;Q9BYX7 Q6S8J3 796 813 POTEE;POTEI;POTEJ;POTEKP POTE ankyrin domain family member E;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed yes no 3 4.5622E-06 50.653 By MS/MS By matching By MS/MS By matching 2 1 3 1 0.51929 0.47978 32.413 7 Median 0.54806 0.50925 8.4295 2 0 Median 0.57062 0.50787 NaN 1 0 Median 0.36253 0.37674 18.333 3 1 Median 0.957 0.81718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65732000 47048000 18684000 23741000 14565000 9176300 504460 309880 194580 41274000 32050000 9224400 211980 122880 89099 0 0 0 0 0 0 35030 3181 36817 184249;184250;184251;184252;184253;184254;184255 186573;186574;186575;186576;186577;186578 186573 6 VAPEEHPTLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPTLLTEAPL EEHPTLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 2 0 0 1 0 0 18 0 1955.0364 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;P68032;P68133;A6NL76 P68032 98 115 ACTG2;ACTA2;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 3 0.00022214 37.645 By matching By MS/MS 1 1 0.29528 0.28963 24.923 2 Median 0.37093 0.34544 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.23506 0.24283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24910000 18685000 6224500 9012000 6360400 2651600 0 0 0 15898000 12325000 3572900 0 0 0 0 0 0 0 0 0 35031 2630;2595 36818 184256;184257 186579 186579 1 VAPEEHPVLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPVLLTEAPL EEHPVLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 18 0 1953.0571 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0 P63261 96 113 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 2;3 3.5859E-32 199.31 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 13 14 7 8 6 0.52302 0.48708 14.448 62 Median 0.55304 0.51629 9.9436 14 3 Median 0.61656 0.53436 12.804 13 2 Plateau 0.43439 0.4376 5.3488 14 1 Median 0.6475 0.57196 19.841 7 0 Plateau 0.47249 0.47824 20.672 8 0 Median 0.66113 0.5357 5.882 6 0 Median 13763000000 8602400000 5160600000 3920100000 2410500000 1509600000 3036700000 1761500000 1275300000 5457900000 3584400000 1873500000 472940000 272570000 200360000 758710000 506740000 251980000 116610000 66658000 49952000 35032 2625 36819 184258;184259;184260;184261;184262;184263;184264;184265;184266;184267;184268;184269;184270;184271;184272;184273;184274;184275;184276;184277;184278;184279;184280;184281;184282;184283;184284;184285;184286;184287;184288;184289;184290;184291;184292;184293;184294;184295;184296;184297;184298;184299;184300;184301;184302;184303;184304;184305;184306;184307;184308;184309;184310;184311;184312;184313;184314;184315;184316;184317;184318;184319 186580;186581;186582;186583;186584;186585;186586;186587;186588;186589;186590;186591;186592;186593;186594;186595;186596;186597;186598;186599;186600;186601;186602;186603;186604;186605;186606;186607;186608;186609;186610;186611;186612;186613;186614;186615;186616;186617;186618;186619;186620;186621;186622;186623;186624;186625;186626;186627;186628;186629;186630;186631;186632;186633;186634;186635;186636;186637;186638;186639;186640;186641;186642;186643;186644;186645;186646;186647;186648;186649;186650;186651;186652;186653;186654;186655;186656;186657;186658;186659;186660;186661;186662;186663;186664;186665;186666;186667;186668;186669;186670;186671;186672;186673;186674;186675;186676;186677;186678;186679;186680;186681;186682;186683;186684;186685;186686;186687;186688;186689;186690 186596 111 VAPEEHPVLLTEAPLNPKANR DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PVLLTEAPLNPKANREKMTQIMFETFNTPA R V A N R E 3 1 2 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 21 1 2294.2383 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;G5E9R0 P63261 96 116 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 3;4 1.9572E-06 40.432 By matching By matching By MS/MS 1 2 2 0.52681 0.54133 14.309 5 Median 0.52681 0.5644 NaN 1 0 Median 0.59423 0.55452 3.4028 2 0 Median 0.39316 0.44807 15.152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43791000 29499000 14292000 5724400 3697400 2027000 1569800 998740 571030 36496000 24803000 11693000 0 0 0 0 0 0 0 0 0 35033 2625 36820 184320;184321;184322;184323;184324 186691;186692;186693 186692 3 VAPGFQFFATR ENGELLIPGRGDCLKVAPGFQFFATRRLLS DCLKVAPGFQFFATRRLLSCGGNWYRPLNS K V A T R R 2 1 0 0 0 1 0 1 0 0 0 0 0 3 1 0 1 0 0 1 0 0 11 0 1239.64 Q9NU22 Q9NU22 434 444 MDN1 Midasin yes yes 2 0.00096639 61.65 By matching By MS/MS By matching 1 1 1 1.3243 1.3611 6.2698 3 Median 1.2937 1.2481 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3384 1.4097 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3243 1.3611 NaN 1 0 Median NaN NaN NaN 0 0 Median 16173000 6809700 9363000 1571200 567790 1003400 0 0 0 13870000 5935300 7934400 0 0 0 731820 306620 425200 0 0 0 35034 4112 36821 184325;184326;184327 186694;186695 186695 2 VAPHALSEEEK AVLYFKHGIDRYWRRVAPHALSEEEKTTLR YWRRVAPHALSEEEKTTLRAGLITNFNEPI R V A E K T 2 0 0 0 0 0 3 0 1 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1208.6037 Q9UI26;F8WDV0;D6RCN7;D6RJB1 Q9UI26 77 87 IPO11 Importin-11 yes no 2;3 0.006947 43.282 By matching By MS/MS 1 4 0.92586 0.94139 21.256 5 Median 0.92586 0.94477 NaN 1 0 Median 0.95358 0.84946 23.601 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811800 1935500 1876300 235440 107490 127950 3576300 1828000 1748300 0 0 0 0 0 0 0 0 0 0 0 0 35035 4288 36822 184328;184329;184330;184331;184332 186696;186697;186698 186698 3 VAPHALSEEEKTTLR AVLYFKHGIDRYWRRVAPHALSEEEKTTLR VAPHALSEEEKTTLRAGLITNFNEPINQIA R V A L R A 2 1 0 0 0 0 3 0 1 0 2 1 0 0 1 1 2 0 0 1 0 0 15 1 1679.8842 Q9UI26;F8WDV0;D6RCN7;D6RJB1 Q9UI26 77 91 IPO11 Importin-11 yes no 3 0.018099 22.475 By MS/MS 1 0.88794 0.92369 NaN 1 Median 0.88794 0.92369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3877000 2014400 1862700 3877000 2014400 1862700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35036 4288 36823 184333 186699;186700 186700 2 VAPLFLVR KKLNTSTKNVPGKMKVAPLFLVRKAQKAAD NVPGKMKVAPLFLVRKAQKAADPVPSFDES K V A V R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 8 0 913.57492 A0A075B754;Q96QE3 A0A075B754 794 801 ATAD5 ATPase family AAA domain-containing protein 5 yes no 2 0.020489 46.37 By MS/MS By matching By matching 1 1 1 0.93205 0.86377 10.99 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77762 0.86377 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93205 0.96804 NaN 1 0 Median 0.94809 0.77707 NaN 1 0 Median 2597800 1360900 1236900 0 0 0 0 0 0 1450900 812950 637910 0 0 0 996210 475280 520930 150690 72650 78045 35037 10 36824 184334;184335;184336 186701 186701 1 VAPLGEEFR FQKKWHEEVEIYRQKVAPLGEEFREGARQK EIYRQKVAPLGEEFREGARQKVQELQDKLS K V A F R E 1 1 0 0 0 0 2 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1016.5291 CON__P15497 CON__P15497 142 150 yes yes 2 8.0068E-12 143.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 0.069259 0.065762 74.072 7 Median 0.069259 0.065762 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.14267 0.1409 85.358 2 2 Median 0.067753 0.056315 NaN 1 1 Median 0.098059 0.10137 81.979 2 2 Median 0.037194 0.029764 NaN 1 1 Median 107290000 101980000 5307800 16963000 15363000 1600100 0 0 0 25470000 23454000 2016100 7742200 7336000 406190 29862000 29099000 762920 27252000 26730000 522450 + 35038 758 36825 184337;184338;184339;184340;184341;184342;184343 186702;186703;186704;186705;186706;186707;186708;186709;186710 186703 9 VAPLGEEFREGAR FQKKWHEEVEIYRQKVAPLGEEFREGARQK QKVAPLGEEFREGARQKVQELQDKLSPLAQ K V A A R Q 2 2 0 0 0 0 3 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 13 1 1429.7314 CON__P15497 CON__P15497 142 154 yes yes 3 5.9678E-08 117.79 By MS/MS By MS/MS By MS/MS 1 1 2 0.18795 0.18361 96.349 4 Median 0.07173 0.076675 NaN 1 1 Median 0.10244 0.086998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3891 0.42957 14.564 2 2 Median NaN NaN NaN 0 0 Median 53777000 42497000 11280000 24270000 22290000 1980700 3503800 3163600 340220 0 0 0 0 0 0 26003000 17044000 8958700 0 0 0 + 35039 758 36826 184344;184345;184346;184347 186711;186712;186713;186714 186714 4 VAPNFKTEPIETK HEGKQLVNGEVSDERVAPNFKTEPIETKFY ERVAPNFKTEPIETKFYETKEESYSPSKDR R V A T K F 1 0 1 0 0 0 2 0 0 1 0 2 0 1 2 0 2 0 0 1 0 0 13 1 1472.7875 Q96T23;H0YER1;H0YCN2 Q96T23 451 463 RSF1 Remodeling and spacing factor 1 yes no 3 0.0022529 37.793 By MS/MS By matching 1 2 0.91154 0.94861 18.173 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88052 0.94861 NaN 1 0 Median 1.1001 0.98945 25.47 2 0 Median 10383000 6259200 4123500 0 0 0 0 0 0 0 0 0 0 0 0 8807500 5436900 3370700 1575200 822300 752860 35040 3740 36827 184348;184349;184350 186715 186715 1 VAPPGLTQIPQIQK MLLTISEFKPTYQDRVAPPGLTQIPQIQKT RVAPPGLTQIPQIQKTEISFRPNDPKSYEA R V A Q K T 1 0 0 0 0 3 0 1 0 2 1 1 0 0 3 0 1 0 0 1 0 0 14 0 1488.8664 P05026;V9GYR2 P05026 72 85 ATP1B1 Sodium/potassium-transporting ATPase subunit beta-1 yes no 2 0.0004472 70.1 By MS/MS By matching By matching By matching 2 2 1 1 0.77283 0.69286 6.9136 6 Median 0.72722 0.67507 5.3624 2 0 Median 0.79105 0.69781 1.1204 2 0 Median 0.58005 0.5897 NaN 1 0 Median 0.78983 0.69342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15348000 8796300 6552200 11875000 6756600 5118400 1780700 996320 784340 1580500 982350 598130 112290 61014 51278 0 0 0 0 0 0 35041 1858 36828 184351;184352;184353;184354;184355;184356 186716;186717;186718 186717 3 VAPQNDSFGTQLPPMHQQQR EGMPSPFKDQPDAKKVAPQNDSFGTQLPPM DSFGTQLPPMHQQQRSVMTEEYKVPDGMVG K V A Q R S 1 1 1 1 0 5 0 1 1 0 1 0 1 1 3 1 1 0 0 1 0 0 20 0 2278.0913 C9JSZ1 C9JSZ1 99 118 FUBP1 yes yes 3 7.7821E-09 70.335 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.74219 0.71533 7.182 5 Median 0.74219 0.71841 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69765 0.69673 NaN 1 0 Median 0.86644 0.73687 4.1965 2 0 Median 0.60529 0.62477 NaN 1 0 Median NaN NaN NaN 0 0 Median 120200000 65069000 55136000 3641400 1819300 1822000 0 0 0 86812000 47828000 38984000 22631000 11599000 11032000 7120600 3822900 3297600 0 0 0 35042 723 36829 184357;184358;184359;184360;184361 186719;186720;186721;186722;186723;186724;186725;186726;186727;186728;186729;186730 186723 12 VAPQNDSFGTQLPPMHQQQSR QKRPLEDGDQPDAKKVAPQNDSFGTQLPPM SFGTQLPPMHQQQSRSVMTEEYKVPDGMVG K V A S R S 1 1 1 1 0 5 0 1 1 0 1 0 1 1 3 2 1 0 0 1 0 0 21 0 2365.1233 Q96AE4;E9PEB5 Q96AE4 78 98 FUBP1 Far upstream element-binding protein 1 yes no 3 3.3301E-12 74.364 By MS/MS By MS/MS 1 2 0.8838 0.76171 5.2317 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69313 0.69656 NaN 1 0 Median 0.89808 0.76261 0.16657 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56661000 30751000 25910000 0 0 0 0 0 0 44734000 24463000 20270000 11927000 6287200 5639800 0 0 0 0 0 0 35043 3599 36830 184362;184363;184364 186731;186732;186733;186734;186735;186736;186737;186738;186739;186740 186731 10 VAPSKLEALQK VHRHALRLLIHLHPRVAPSKLEALQKALEP LHPRVAPSKLEALQKALEPTGQSGEAVKEL R V A Q K A 2 0 0 0 0 1 1 0 0 0 2 2 0 0 1 1 0 0 0 1 0 0 11 1 1182.6972 Q8WX92 Q8WX92 515 525 NELFB Negative elongation factor B yes yes 3 0.01394 43.604 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 899380 0 899380 899380 0 899380 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35044 3514 36831 184365 186741 186741 1 VAPSKWEAVDESELEAQAVTTSK LDATEDSKKNEPIFKVAPSKWEAVDESELE VDESELEAQAVTTSKWELFDQHEESEEEEN K V A S K W 4 0 0 1 0 1 4 0 0 0 1 2 0 0 1 3 2 1 0 3 0 0 23 1 2474.2177 O15042;E7ET15;H7C4V2 O15042 756 778 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 3 4.1681E-16 69.133 By MS/MS By MS/MS By matching 1 1 1 0.79045 0.88565 16.755 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7163 0.82964 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79045 0.88565 NaN 1 0 Median 1.2531 1.1394 NaN 1 0 Median 18156000 10437000 7719300 0 0 0 0 0 0 12737000 7323800 5413200 0 0 0 5085100 2942000 2143100 334310 171360 162950 35045 1515 36832 184366;184367;184368 186742;186743;186744;186745 186743 4 VAPVINNGSPTILGK VKSVSSVLSSLTPAKVAPVINNGSPTILGK VAPVINNGSPTILGKRSYEQHNGVDGLANH K V A G K R 1 0 2 0 0 0 0 2 0 2 1 1 0 0 2 1 1 0 0 2 0 0 15 0 1478.8457 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 568 582 MTA1 Metastasis-associated protein MTA1 yes no 2 0.00013168 78.653 By MS/MS By MS/MS 1 1 0.69443 0.7133 5.4398 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67273 0.68638 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71684 0.74127 NaN 1 0 Median NaN NaN NaN 0 0 Median 13267000 7471300 5795800 0 0 0 0 0 0 9678700 5642000 4036800 0 0 0 3588300 1829300 1759000 0 0 0 35046 888 36833 184369;184370 186746;186747;186748 186747 3 VAPYRPDQQVEEDDDFMDENQGK YVIKACSRKLYNWLRVAPYRPDQQVEEDDD QVEEDDDFMDENQGKGIRVLGIAFSSARDH R V A G K G 1 1 1 5 0 3 3 1 0 0 0 1 1 1 2 0 0 0 1 2 0 0 23 1 2724.161 Q7KZ85 Q7KZ85 755 777 SUPT6H Transcription elongation factor SPT6 yes yes 3 5.7399E-12 58.914 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.79569 0.81019 4.0004 4 Median 0.75189 0.7572 NaN 1 0 Median 0.87347 0.83109 NaN 1 0 Median 0.67356 0.80748 NaN 1 0 Median 0.84204 0.8129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20418000 12153000 8265400 7495900 4261000 3234900 2517500 1268100 1249400 9554300 6192800 3361500 850600 431030 419560 0 0 0 0 0 0 35047 3213 36834 184371;184372;184373;184374 186749;186750;186751;186752 186749 4 VAQAQAQHELEIK VVAELKQEDQRCTERVAQAQAQHELEIKKL ERVAQAQAQHELEIKKLKELMSATEKARRE R V A I K K 3 0 0 0 0 3 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1463.7732 Q9UPN4;I3L2X7;I3L2J8 Q9UPN4 666 678 CEP131 Centrosomal protein of 131 kDa yes no 3 0.0073631 27.137 By MS/MS 1 0.73682 0.61913 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73682 0.61913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1431500 841560 589920 0 0 0 0 0 0 0 0 0 1431500 841560 589920 0 0 0 0 0 0 35048 4355 36835 184375 186753 186753 1 VAQDWLK LAAKFVNQLKGESRRVAQDWLKEARMTLET QLKGESRRVAQDWLKEARMTLETKQIVEIL R V A L K E 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 7 0 858.45995 Q16891;B9A067;C9J406;H7C463;A0A087WYS0 Q16891 720 726 IMMT MICOS complex subunit MIC60 yes no 2 0.017757 69.432 By MS/MS By MS/MS By matching 1 2 1 1.1791 1.0287 22.934 4 Median 1.0178 0.93009 NaN 1 0 Median 1.2892 1.1312 35.841 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3659 1.1377 NaN 1 0 Median 20108000 8649400 11459000 8848700 4160500 4688200 10409000 4145700 6262900 0 0 0 0 0 0 0 0 0 850960 343200 507760 35049 3001 36836 184376;184377;184378;184379 186754;186755 186754 2 VAQEKDQLQEQLQALK LQLRSEQQKATEKERVAQEKDQLQEQLQAL AQEKDQLQEQLQALKESLKVTKGSLEEEKR R V A L K E 2 0 0 1 0 5 2 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 16 1 1868.0003 A0A087WY61;F5H4J1;Q14980 Q14980 693 708 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 5.8653E-46 219.42 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 3 2 1.1805 1.1458 25.857 14 Median 1.8268 1.82 45.089 2 0 Median 1.174 1.1327 10.415 2 0 Median 0.94123 1.0947 22.03 3 0 Median 1.2864 1.2606 25.622 2 0 Median 1.0515 1.1428 23.763 3 0 Median 1.1731 1.0468 13.145 2 0 Median 395400000 193300000 202100000 7277600 2749200 4528300 15072000 6832400 8239100 273840000 137160000 136680000 9087500 4176800 4910600 87948000 41378000 46570000 2172900 1000900 1172000 35050 2905;77 36837 184380;184381;184382;184383;184384;184385;184386;184387;184388;184389;184390;184391;184392;184393 186756;186757;186758;186759;186760;186761;186762;186763;186764;186765;186766;186767;186768 186760 13 VAQEKDQLQEQLQALKESLK LQLRSEQQKATEKERVAQEKDQLQEQLQAL DQLQEQLQALKESLKVTKGSLEEEKRRAAD R V A L K V 2 0 0 1 0 5 3 0 0 0 4 3 0 0 0 1 0 0 0 1 0 0 20 2 2325.254 A0A087WY61;F5H4J1;Q14980 Q14980 693 712 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 9.1506E-09 74.953 By matching By MS/MS By MS/MS 1 2 2 0.93154 1.0793 23.052 5 Median NaN NaN NaN 0 0 Median 0.74984 0.69615 NaN 1 0 Median 0.91233 1.057 2.948 2 0 Median NaN NaN NaN 0 0 Median 1.0389 1.2187 1.5779 2 0 Median NaN NaN NaN 0 0 Median 30568000 14930000 15638000 0 0 0 5002900 2871600 2131300 20946000 10157000 10790000 0 0 0 4618800 1902300 2716500 0 0 0 35051 2905;77 36838 184394;184395;184396;184397;184398 186769;186770;186771;186772;186773 186770 5 VAQETDVR FPPGTKGNTFVHDPKVAQETDVRAQIRLQF TFVHDPKVAQETDVRAQIRLQFRDVNGELI K V A V R A 1 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 8 0 916.46141 Q92878;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;E9PM98 Q92878 72 79 RAD50 DNA repair protein RAD50 yes no 2 0.060654 32.47 By MS/MS By matching By matching 1 1 1 1.1066 1.0445 5.103 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98018 1.0445 NaN 1 0 Median 1.1636 1.0075 NaN 1 0 Median 1.1066 1.1143 NaN 1 0 Median NaN NaN NaN 0 0 Median 805470 405140 400330 0 0 0 0 0 0 368500 190070 178430 137990 66345 71648 298970 148730 150250 0 0 0 35052 3561 36839 184399;184400;184401 186774 186774 1 VAQGIREEEVSYQLAFNK PLEKLNHFFEGVEARVAQGIREEEVSYQLA GIREEEVSYQLAFNKQELRKVIKEYPGKEV R V A N K Q 2 1 1 0 0 2 3 1 0 1 1 1 0 1 0 1 0 0 1 2 0 0 18 1 2080.0589 Q9NV70 Q9NV70 789 806 EXOC1 Exocyst complex component 1 yes yes 3 0.0002154 49.993 By MS/MS 1 1.1874 1.348 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1874 1.348 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4878700 2687400 2191200 0 0 0 0 0 0 4878700 2687400 2191200 0 0 0 0 0 0 0 0 0 35053 4125 36840 184402 186775 186775 1 VAQGVSGAVQDK LSSQNRYFSEADKIKVAQGVSGAVQDKGSI KIKVAQGVSGAVQDKGSIHKFVPYLIAGIQ K V A D K G 2 0 0 1 0 2 0 2 0 0 0 1 0 0 0 1 0 0 0 3 0 0 12 0 1157.6041 P12268;H0Y4R1 P12268 439 450 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 7.8434E-06 121.9 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0922 1.0295 9.4094 6 Plateau 0.94972 0.90615 15.933 2 0 Median 1.1831 1.028 2.332 2 0 Median 0.91491 0.91494 NaN 1 0 Median 1.1026 0.96714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24284000 10566000 13719000 7215000 3392200 3822900 16270000 6797900 9471900 428040 203400 224640 371650 172350 199310 0 0 0 0 0 0 35054 1148 36841 184403;184404;184405;184406;184407;184408 186776;186777;186778 186777 3 VAQILKEPK SKQNKLEQVEKELLRVAQILKEPKVAASVL EKELLRVAQILKEPKVAASVLNPYVKRSIK R V A P K V 1 0 0 0 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 1 0 0 9 1 1024.6281 P48047;A0A494C0K9;H7C0C1 P48047 65 73 ATP5O ATP synthase subunit O, mitochondrial yes no 2 0.0041598 92.838 By matching By MS/MS By matching 1 3 1 1.1082 1.0022 10.73 5 Median 0.87013 0.88469 NaN 1 0 Median 1.1334 1.0149 5.053 3 0 Median 0.84316 0.84584 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18887000 9279700 9607200 10269000 5167900 5101500 5665300 2545600 3119600 2952200 1566200 1386000 0 0 0 0 0 0 0 0 0 35055 2358 36842 184409;184410;184411;184412;184413 186779;186780 186779 2 VAQIQNAGLGEFR AEKWRRQIIGEISKKVAQIQNAGLGEFRIR KKVAQIQNAGLGEFRIRDLNDEINKLLREK K V A F R I 2 1 1 0 0 2 1 2 0 1 1 0 0 1 0 0 0 0 0 1 0 0 13 0 1401.7365 Q9ULR0;D6RC18;A8MVI5 Q9ULR0 57 69 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes no 2 0.013272 51.092 By MS/MS 1 21.203 21.39 NaN 1 Median 21.203 21.39 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152810000 7842900 144970000 152810000 7842900 144970000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35056 4327 36843 184414 186781 186781 1 VAQKELEEAVTSALQQETEK HQAKEQYEALQEETRVAQKELEEAVTSALQ LEEAVTSALQQETEKSKAAKELAENKKKID R V A E K S 3 0 0 0 0 3 5 0 0 0 2 2 0 0 0 1 2 0 0 2 0 0 20 1 2230.1329 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4 H3BPE1 3714 3733 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 1.2691E-07 58.49 By MS/MS By matching 1 1 0.84326 0.86296 1.2412 2 Median 0.79887 0.87056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89012 0.85542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8863200 4393600 4469700 8440800 4174800 4266100 0 0 0 0 0 0 422430 218790 203640 0 0 0 0 0 0 35057 1220 36844 184415;184416 186782;186783 186783 2 VAQLEEER LQQQSAREVGELQGRVAQLEEERARLAEQL VGELQGRVAQLEEERARLAEQLRAEAELCA R V A E R A 1 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 972.48762 Q7Z406 Q7Z406 899 906 MYH14 Myosin-14 no no 2 0.021269 66.073 By MS/MS 1 1.1577 0.9937 NaN 1 Median NaN NaN NaN 0 0 Median 1.1577 0.9937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 757170 378490 378680 0 0 0 757170 378490 378680 0 0 0 0 0 0 0 0 0 0 0 0 35058 3242 36845 184417 186784 186784 1 VAQLEQVYIR NCQMSNITVTYRDGRVAQLEQVYIRGSKIR YRDGRVAQLEQVYIRGSKIRFLILPDMLKN R V A I R G 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 2 0 0 10 0 1217.6768 P62318 P62318 55 64 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 4.8644E-22 194.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 4 5 2 1.1633 1.0584 11.815 17 Median 1.1214 1.0627 0.57082 2 0 Median 1.3035 1.1212 9.3932 3 0 Median 1.0567 1.0571 0.1093 2 0 Median 1.2077 0.96943 19.496 4 1 Median 1.1279 1.1582 3.6202 4 0 Median 1.2202 0.98407 1.5678 2 0 Median 3042600000 1385000000 1657600000 322300000 148100000 174200000 487140000 211820000 275320000 1360900000 633980000 726890000 372200000 157680000 214520000 481340000 224920000 256420000 18743000 8510300 10233000 35059 2587 36846 184418;184419;184420;184421;184422;184423;184424;184425;184426;184427;184428;184429;184430;184431;184432;184433;184434;184435 186785;186786;186787;186788;186789;186790;186791;186792;186793;186794;186795;186796;186797;186798;186799;186800;186801;186802;186803;186804;186805;186806;186807;186808;186809;186810;186811;186812;186813;186814;186815;186816;186817;186818;186819;186820 186791 35 VAQLLER RHGERDVEVERWRERVAQLLERWQAVLAQT EVERWRERVAQLLERWQAVLAQTDVRQREL R V A E R W 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 827.4865 Q15149;H0YDN1 Q15149 1318 1324 PLEC Plectin yes no 2 0.00067942 138.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.3269 1.2139 12.333 6 Median NaN NaN NaN 0 0 Median 1.3704 1.0967 NaN 1 0 Median 1.1801 1.3008 6.4581 2 0 Median 1.2848 1.1184 NaN 1 0 Median 1.4586 1.5132 NaN 1 0 Median 1.4368 1.1856 NaN 1 0 Median 50083000 20965000 29118000 0 0 0 21290000 8844800 12445000 5508400 2673700 2834700 1541900 675640 866300 6906500 2718200 4188200 14836000 6052500 8783400 35060 2933 36847 184436;184437;184438;184439;184440;184441 186821;186822;186823;186824;186825;186826;186827 186827 7 VAQMPQEEVELLPPAPK IVLMAQALEKIFLQKVAQMPQEEVELLPPA QMPQEEVELLPPAPKGKGRKPAAGAQSAGT K V A P K G 2 0 0 0 0 2 3 0 0 0 2 1 1 0 4 0 0 0 0 2 0 0 17 0 1874.9812 Q15059 Q15059 137 153 BRD3 Bromodomain-containing protein 3 yes yes 2;3 0.00064738 39.266 By MS/MS By MS/MS 2 2 0.391 0.41318 10.398 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3956 0.43259 3.6555 2 0 Median NaN NaN NaN 0 0 Median 0.36487 0.37572 10.601 2 0 Median NaN NaN NaN 0 0 Median 32594000 21984000 10610000 0 0 0 0 0 0 24743000 16885000 7858100 0 0 0 7851000 5098900 2752100 0 0 0 35061 2923 36848 184442;184443;184444;184445 186828;186829 186829 2 VAQPETPVTLQFQGSK VKIAQLASITGPQSRVAQPETPVTLQFQGS AQPETPVTLQFQGSKFTLSHSQLRQLTAGQ R V A S K F 1 0 0 0 0 3 1 1 0 0 1 1 0 1 2 1 2 0 0 2 0 0 16 0 1728.9046 Q96L91 Q96L91 1619 1634 EP400 E1A-binding protein p400 yes yes 2 1.413E-09 119.45 By MS/MS By MS/MS By matching 2 1 1 0.69962 0.70065 16.218 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54686 0.59601 22.282 2 0 Median 0.74841 0.71061 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81377 0.70359 NaN 1 0 Median 29965000 18144000 11821000 0 0 0 0 0 0 28460000 17309000 11151000 1229800 675390 554420 0 0 0 275440 159860 115580 35062 3700 36849 184446;184447;184448;184449 186830;186831;186832 186831 3 VAQPGPLEPEEPR GQEPLHNEELAGAGRVAQPGPLEPEEPRAG GRVAQPGPLEPEEPRAGGRPRRRRDLGSRL R V A P R A 1 1 0 0 0 1 3 1 0 0 1 0 0 0 4 0 0 0 0 1 0 0 13 0 1417.7201 Q96HY6;A0A0A0MRX2 Q96HY6 47 59 DDRGK1 DDRGK domain-containing protein 1 yes no 2 0.00054524 70.942 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.61509 0.53071 31.083 5 Median NaN NaN NaN 0 0 Median 0.70111 0.6286 23.939 2 0 Median 0.45866 0.49749 NaN 1 0 Median 0.5633 0.49402 NaN 1 0 Median 0.94666 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median 18577000 10223000 8354300 0 0 0 5864700 3234200 2630500 6269700 3634300 2635400 1919800 1178200 741630 4523200 2176500 2346700 0 0 0 35063 3672 36850 184450;184451;184452;184453;184454 186833;186834;186835 186833 3 VAQPKEVYQQQQYGSGGR EKKFHTVSGSKCEIKVAQPKEVYQQQQYGS PKEVYQQQQYGSGGRGNRNRGNRGSGGGQG K V A G R G 1 1 0 0 0 5 1 3 0 0 0 1 0 0 1 1 0 0 2 2 0 0 18 1 2021.9919 D6R9P3;D6RD18;D6RBZ0;Q99729 D6R9P3 228 245 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes no 3 0.031639 23.329 By MS/MS 1 1.1596 1.0201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1596 1.0201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 833930 257510 576420 0 0 0 0 0 0 0 0 0 833930 257510 576420 0 0 0 0 0 0 35064 805 36851 184455 186836 186836 1 VAQPPLSAQATGSGQPTR TSLVSAWNSSSSSKKVAQPPLSAQATGSGQ PPLSAQATGSGQPTRKAGKGSRGGRKGGPP K V A T R K 3 1 0 0 0 3 0 2 0 0 1 0 0 0 3 2 2 0 0 1 0 0 18 0 1764.9119 Q86UK7;H3BQQ2;H3BPG6;H3BR87 Q86UK7 516 533 ZNF598 Zinc finger protein 598 yes no 2 5.604E-06 73.466 By MS/MS 1 0.54282 0.46379 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54282 0.46379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 807650 434380 373270 0 0 0 0 0 0 0 0 0 807650 434380 373270 0 0 0 0 0 0 35065 3278 36852 184456 186837;186838 186837 2 VAQPTITDNK KKGEITGEVRMPSGKVAQPTITDNKDGTVT MPSGKVAQPTITDNKDGTVTVRYAPSEAGL K V A N K D 1 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 0 0 1 0 0 10 0 1085.5717 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1815 1824 FLNA Filamin-A no no 2 0.003121 57.859 By MS/MS 2 0.78813 0.69105 7.0417 2 Median NaN NaN NaN 0 0 Median 0.78813 0.69105 7.0417 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7166200 3984700 3181500 0 0 0 7166200 3984700 3181500 0 0 0 0 0 0 0 0 0 0 0 0 35066 2088;3120 36853 184457;184458 186839;186840;186841 186841 3 VAQPTITDNKDGTVTVR KKGEITGEVRMPSGKVAQPTITDNKDGTVT QPTITDNKDGTVTVRYAPSEAGLHEMDIRY K V A V R Y 1 1 1 2 0 1 0 1 0 1 0 1 0 0 1 0 4 0 0 3 0 0 17 1 1813.9534 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1815 1831 FLNA Filamin-A no no 2;3 1.0252E-17 173.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 11 4 4 3 3 0.90106 0.88902 22.968 32 Median 1.0374 1.0471 13.324 8 1 Median 0.82759 0.7699 14.958 10 0 Median 0.93601 1.1204 15.626 4 0 Median 0.84926 0.80533 14.348 4 0 Median 1.1655 1.3246 1.4574 3 0 Median 0.87245 0.775 9.3567 3 0 Median 1193000000 617850000 575200000 385150000 186600000 198540000 659250000 354050000 305200000 85232000 44558000 40674000 28674000 15302000 13371000 25262000 12468000 12794000 9476300 4861500 4614800 35067 2088;3120 36854 184459;184460;184461;184462;184463;184464;184465;184466;184467;184468;184469;184470;184471;184472;184473;184474;184475;184476;184477;184478;184479;184480;184481;184482;184483;184484;184485;184486;184487;184488;184489;184490;184491 186842;186843;186844;186845;186846;186847;186848;186849;186850;186851;186852;186853;186854;186855;186856;186857;186858;186859;186860;186861;186862;186863;186864;186865;186866;186867;186868;186869;186870;186871;186872;186873;186874;186875;186876;186877;186878;186879;186880;186881;186882;186883;186884;186885;186886;186887;186888;186889;186890;186891;186892;186893;186894;186895 186846 54 VAQVAEITYGQK EAETERKKALIEAEKVAQVAEITYGQKVME AEKVAQVAEITYGQKVMEKETEKKISEIED K V A Q K V 2 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 1 0 1 2 0 0 12 0 1305.6929 O94905;E5RHW4;E5RJ09 O94905 221 232 ERLIN2 Erlin-2 yes no 2 1.163E-09 176.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.486 1.2537 27.457 6 Median 0.94574 0.86943 NaN 1 0 Median 1.6459 1.4012 NaN 1 0 Median 0.84413 0.8907 NaN 1 0 Median 1.3417 1.1236 NaN 1 0 Median 1.7343 1.7267 NaN 1 1 Median 1.6641 1.3989 NaN 1 0 Median 105660000 46739000 58926000 42930000 21684000 21246000 50789000 20003000 30786000 5408500 2653900 2754700 644270 212040 432230 4754100 1749300 3004800 1139600 437110 702510 35068 848 36855 184492;184493;184494;184495;184496;184497 186896;186897;186898;186899;186900;186901;186902;186903 186897 8 VAQVLEGFITR QVEVFRRQDAQRGMRVAQVLEGFITRKVVK RGMRVAQVLEGFITRKVVKQTVMTVVYGVT R V A T R K 1 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1231.6925 O00411 O00411 977 987 POLRMT DNA-directed RNA polymerase, mitochondrial yes yes 2 0.013325 37.476 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0792 1.0876 16.48 5 Median 1.0158 0.98287 NaN 1 0 Median 1.6143 1.4028 NaN 1 0 Median 0.9942 1.0876 NaN 1 0 Median 1.0792 0.94354 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.467 1.2416 NaN 1 0 Median 7663200 3858100 3805100 3811100 2101600 1709500 1258600 495040 763580 2234700 1073800 1160900 280790 150190 130600 0 0 0 78024 37479 40545 35069 1461 36856 184498;184499;184500;184501;184502 186904;186905;186906 186906 3 VAQWMIQQPHK KVEYHAGGSTQNSIKVAQWMIQQPHKAATF NSIKVAQWMIQQPHKAATFFGCIGIDKFGE K V A H K A 1 0 0 0 0 3 0 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 11 0 1364.7023 P55263 P55263 89 99 ADK Adenosine kinase yes yes 3 0.00052072 56.359 By MS/MS By MS/MS 1 1 0.94232 0.83605 24.222 2 Median 0.76258 0.70445 NaN 1 0 Median 1.1644 0.99224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31884000 14771000 17112000 17556000 9299100 8257100 14327000 5472300 8855100 0 0 0 0 0 0 0 0 0 0 0 0 35070 2497 36857 184503;184504 186907;186908;186909;186910 186908 4 VAQYVVR DTELQGMNEYLSSFKVAQYVVREEEMGEEE NEYLSSFKVAQYVVREEEMGEEEEVEREII K V A V R E 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 7 0 833.47594 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y5M9;A0A2R8YE38;K7EPV1;K7ESA5;Q8TDI0;K7EMY3;Q12873 Q14839 1282 1288 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0031886 121.87 By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 1.2325 1.1382 7.8943 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0404 1.1491 NaN 1 0 Median 1.3338 1.1643 7.067 2 0 Median 1.1866 1.2444 NaN 1 0 Median 1.2855 1.0613 8.5461 2 0 Median 15120000 6864400 8255900 0 0 0 0 0 0 4337100 2110300 2226900 2186000 899590 1286400 4152700 1993400 2159300 4444500 1861200 2583400 35071 246;3471;2766 36858 184505;184506;184507;184508;184509;184510 186911;186912;186913;186914;186915 186915 5 VAQYVVREEEMGEEEEVER DTELQGMNEYLSSFKVAQYVVREEEMGEEE VVREEEMGEEEEVEREIIKQEESVDPDYWE K V A E R E 1 2 0 0 0 1 8 1 0 0 0 0 1 0 0 0 0 0 1 4 0 0 19 1 2309.0482 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y5M9;A0A2R8YE38 Q14839 1282 1300 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 6.3685E-31 184.8 By MS/MS 3 0.88759 1.1212 2.5769 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88759 1.1212 2.5769 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42142000 22332000 19810000 0 0 0 0 0 0 42142000 22332000 19810000 0 0 0 0 0 0 0 0 0 35072 246 36859;36860 184511;184512;184513 186916;186917;186918;186919 186917 100 4 VARPLPAEEPER KDQDEKRRRVTSRERVARPLPAEEPERAKS RERVARPLPAEEPERAKSGTRTEKEEERDE R V A E R A 2 2 0 0 0 0 3 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 12 1 1362.7256 P26358;K7ENQ6 P26358 213 224 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2;3 4.143E-05 89.43 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 8 11 1 0.59151 0.59902 18.766 22 Median 0.31803 0.34011 NaN 1 0 Median 0.48047 0.41856 NaN 1 0 Median 0.52225 0.61519 17.276 8 3 Median 0.64466 0.61626 8.8863 11 0 Median NaN NaN NaN 0 0 Median 0.54963 0.48593 NaN 1 0 Median 142360000 89526000 52838000 1024300 723520 300790 618780 468850 149930 92925000 60380000 32545000 46426000 27171000 19255000 0 0 0 1369400 781950 587440 35073 2142 36861 184514;184515;184516;184517;184518;184519;184520;184521;184522;184523;184524;184525;184526;184527;184528;184529;184530;184531;184532;184533;184534;184535 186920;186921;186922;186923;186924;186925;186926;186927;186928;186929;186930;186931;186932;186933;186934;186935;186936;186937;186938;186939;186940;186941;186942;186943;186944;186945;186946 186933 27 VARPLPAEEPERAK KDQDEKRRRVTSRERVARPLPAEEPERAKS RVARPLPAEEPERAKSGTRTEKEEERDEKE R V A A K S 3 2 0 0 0 0 3 0 0 0 1 1 0 0 3 0 0 0 0 1 0 0 14 2 1561.8576 P26358;K7ENQ6 P26358 213 226 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3 0.0014991 37.954 By MS/MS 1 0.57521 0.69123 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57521 0.69123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2917500 1815100 1102400 0 0 0 0 0 0 2917500 1815100 1102400 0 0 0 0 0 0 0 0 0 35074 2142 36862 184536 186947 186947 1 VASGNDHLVMLTADGDLYTLGCGEQGQLGR SMVPVQVQLDVPVVKVASGNDHLVMLTADG DLYTLGCGEQGQLGRVPELFANRGGRQGLE K V A G R V 2 1 1 3 1 2 1 6 1 0 5 0 1 0 0 1 2 0 1 2 0 0 30 0 3146.4761 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 177 206 RCC1 Regulator of chromosome condensation yes no 3 0.04059 10.631 By MS/MS 1 0.89546 0.90205 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89546 0.90205 NaN 1 0 Median NaN NaN NaN 0 0 Median 3093800 1647600 1446100 0 0 0 0 0 0 0 0 0 0 0 0 3093800 1647600 1446100 0 0 0 35075 2061 36863 184537 186948 186948 1 VASIETGLAAAAAK PSVPRQDRPVREGTRVASIETGLAAAAAKL RVASIETGLAAAAAKLSQQEEQKSKKKKSA R V A A K L 6 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1271.7085 O75151;E7ET14;A0A087WW48;Q9UPP1;H0Y3N9;H0Y589 O75151 927 940 PHF2;PHF8 Lysine-specific demethylase PHF2;Histone lysine demethylase PHF8 no no 2 1.895E-08 134.84 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1048 1.0191 18.431 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86152 0.9019 13.677 2 0 Median 1.1048 0.94464 14.322 2 0 Median 1.2566 1.3151 NaN 1 0 Median 1.3846 1.1909 NaN 1 0 Median 40149000 19928000 20221000 0 0 0 0 0 0 27356000 13816000 13540000 2890400 1407300 1483000 9256600 4396100 4860500 646270 308970 337300 35076 1649;1143 36864 184538;184539;184540;184541;184542;184543 186949;186950;186951;186952;186953;186954 186949 6 VASLDYLGTVAAR LVHQFSNKSTEMALRVASLDYLGTVAARLR LRVASLDYLGTVAARLRKDAVTSKMDQGSI R V A A R L 3 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 2 0 0 13 0 1334.7194 A0A590UJS4;Q6KC79 A0A590UJS4 1607 1619 NIPBL Nipped-B-like protein yes no 2 1.1973E-15 152.04 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.0244 1.0083 10.589 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0085 1.0605 NaN 1 1 Median 1.359 1.1787 NaN 1 0 Median 0.95909 0.9984 0.95398 2 0 Median 1.1257 0.92758 12.247 2 0 Median 45814000 21926000 23889000 0 0 0 0 0 0 16908000 8440900 8467000 307620 76197 231430 24320000 11571000 12749000 4278300 1837300 2441000 35077 488 36865 184544;184545;184546;184547;184548;184549 186955;186956;186957;186958;186959;186960;186961 186955 7 VASLEESEGNKQDLK VQKRSQKEINDMKAKVASLEESEGNKQDLK VASLEESEGNKQDLKALKEAVKEIQTSAKS K V A L K A 1 0 1 1 0 1 3 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 15 1 1645.8159 Q07065 Q07065 273 287 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 1.9967E-45 218.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 1.7434 1.6098 30.46 9 Median 1.0059 0.93926 1.7758 2 0 Median 1.7592 1.6446 7.152 3 0 Median 1.0824 1.2095 NaN 1 0 Median 1.8413 1.7001 7.7222 2 0 Median NaN NaN NaN 0 0 Median 2.6577 2.3687 NaN 1 0 Median 104820000 43949000 60867000 50789000 23908000 26881000 38855000 13922000 24934000 9104200 4156300 4947900 4189800 1529000 2660900 0 0 0 1878600 434330 1444300 35078 2730 36866 184550;184551;184552;184553;184554;184555;184556;184557;184558 186962;186963;186964;186965;186966;186967;186968;186969;186970;186971;186972;186973 186969 12 VASMAPVTAEGFQER AHYKTDWHRYNLRRKVASMAPVTAEGFQER VASMAPVTAEGFQERVRAQRAVAEEESKGS K V A E R V 3 1 0 0 0 1 2 1 0 0 0 0 1 1 1 1 1 0 0 2 0 0 15 0 1591.7664 Q969S3 Q969S3 36 50 ZNF622 Zinc finger protein 622 yes yes 2 1.4109E-13 121.02 By MS/MS By MS/MS By MS/MS 2 1 2 0.98863 0.91298 8.151 4 Median 0.94245 0.89759 1.6513 2 2 Median NaN NaN NaN 0 0 Median 1.0252 1.0618 NaN 1 1 Median 1.0984 0.91785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26791000 13267000 13524000 21204000 10758000 10446000 0 0 0 4346300 1932500 2413800 1240700 576500 664230 0 0 0 0 0 0 35079 3586 36867 184559;184560;184561;184562;184563 186974;186975;186976;186977;186978 186974 5 VASMPQEEQELVVTIPK IVLMAQTLEKIFLQKVASMPQEEQELVVTI SMPQEEQELVVTIPKNSHKKGAKLAALQGS K V A P K N 1 0 0 0 0 2 3 0 0 1 1 1 1 0 2 1 1 0 0 3 0 0 17 0 1896.9867 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0Y799;A0A140T9X8 H0Y6K2 183 199 BRD2 Bromodomain-containing protein 2 yes no 2 0.0051389 30.205 By MS/MS By MS/MS 1 1 1.7032 1.813 18.372 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4513 1.5921 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9989 2.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median 8181500 2427800 5753700 0 0 0 0 0 0 3176700 978880 2197800 0 0 0 5004800 1448900 3555900 0 0 0 35080 279 36868 184564;184565 186979;186980 186980 2 VASQGEVVR PAGLETPEAKVLFDKVASQGEVVRKLKTEK KVLFDKVASQGEVVRKLKTEKAPKDQVDIA K V A V R K 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 3 0 0 9 0 943.50869 P07814;V9GYZ6 P07814 908 916 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0036618 63.565 By MS/MS 2 0.91253 0.78201 31.684 2 Median NaN NaN NaN 0 0 Median 0.91253 0.78201 31.684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2361600 1108300 1253300 0 0 0 2361600 1108300 1253300 0 0 0 0 0 0 0 0 0 0 0 0 35081 1892 36869 184566;184567 186981;186982;186983;186984 186984 4 VASSHISDANLANTIIGK HRDERVLSLKILSDRVASSHISDANLANTI SHISDANLANTIIGKAVEHMFEGEHGSKDE R V A G K A 3 0 2 1 0 0 0 1 1 3 1 1 0 0 0 3 1 0 0 1 0 0 18 0 1809.9585 Q5JZB8;Q9BPZ2;Q99865 Q5JZB8 114 131 SPIN2B;SPIN2A Spindlin-2B;Spindlin-2A yes no 3 7.4484E-05 41.86 By MS/MS 1 0.95799 0.9763 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95799 0.9763 NaN 1 0 Median NaN NaN NaN 0 0 Median 12088000 6293800 5794100 0 0 0 0 0 0 0 0 0 0 0 0 12088000 6293800 5794100 0 0 0 35082 3062 36870 184568 186985;186986 186985 2 VASSPVMVSNPATR MAVTPGTTTLPATVKVASSPVMVSNPATRM KVASSPVMVSNPATRMLKTAAAQVGTSVSS K V A T R M 2 1 1 0 0 0 0 0 0 0 0 0 1 0 2 3 1 0 0 3 0 0 14 0 1414.7238 A6NEM2;P51610 A6NEM2 595 608 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 2.7444E-32 209.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 0.81302 0.7279 16.587 9 Median NaN NaN NaN 0 0 Median 1.2163 1.0238 NaN 1 1 Median 0.68024 0.7279 18.046 3 0 Median 0.87134 0.74999 7.7006 3 0 Median NaN NaN NaN 0 0 Median 0.79252 0.65273 1.9901 2 0 Median 68466000 37088000 31379000 0 0 0 5971300 2041500 3929800 48713000 28114000 20599000 10490000 5350900 5139000 0 0 0 3292100 1581500 1710600 35083 509;2438 36871 184569;184570;184571;184572;184573;184574;184575;184576;184577 186987;186988;186989;186990;186991;186992;186993;186994;186995;186996;186997;186998;186999;187000 186991 14 VASSSSGNNFLSGSPASPMGDILQTPQFQMR SHQAKREIRFLELQKVASSSSGNNFLSGSP SPMGDILQTPQFQMRRLKKQLADERSNRDE K V A M R R 2 1 2 1 0 3 0 3 0 1 2 0 2 2 3 7 1 0 0 1 0 0 31 0 3210.5074 A0A087WY61;F5H4J1;F5H6Y5;F5H763;Q14980 Q14980 187 217 NUMA1 Nuclear mitotic apparatus protein 1 no no 3 1.166E-09 48.422 By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 0.54336 0.56986 16.033 8 Median 0.80647 0.80611 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52283 0.56986 0.19256 2 2 Median NaN NaN NaN 0 0 Median 0.52425 0.55569 13.073 4 0 Median 0.65084 0.55074 NaN 1 0 Median 46925000 34617000 12308000 2160200 1059200 1101000 0 0 0 37997000 29368000 8628900 0 0 0 6599400 4091400 2508000 168440 98483 69961 35084 2905;77 36872;36873 184578;184579;184580;184581;184582;184583;184584;184585 187001;187002;187003;187004;187005;187006;187007;187008 187008 38 8 VASSTLLDDRR PQHTEAETIQKLCDRVASSTLLDDRRNAVR LCDRVASSTLLDDRRNAVRALKSLSKKYRL R V A R R N 1 2 0 2 0 0 0 0 0 0 2 0 0 0 0 2 1 0 0 1 0 0 11 1 1231.6521 O60763 O60763 30 40 USO1 General vesicular transport factor p115 yes yes 2;3 3.4199E-05 84.507 By MS/MS By MS/MS 2 3 0.99324 1.0876 28.58 5 Median 0.9914 1.1015 1.7965 2 0 Median 0.99324 0.98269 36.531 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19211000 9269900 9940800 7518000 3829100 3689000 11693000 5440800 6251800 0 0 0 0 0 0 0 0 0 0 0 0 35085 1630 36874 184586;184587;184588;184589;184590 187009;187010;187011;187012 187012 4 VASTENGIIFGNIVYDVSGAASDR TLAPHDFANIKANVKVASTENGIIFGNIVY FGNIVYDVSGAASDRNCVVLSDIHIDIMDY K V A D R N 3 1 2 2 0 0 1 3 0 3 0 0 0 1 0 3 1 0 1 3 0 0 24 0 2454.2027 P53618 P53618 791 814 COPB1 Coatomer subunit beta yes yes 3 0.0099104 18.719 By MS/MS 1 0.8089 0.81737 NaN 1 Median 0.8089 0.81737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 999790 508000 491780 999790 508000 491780 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35086 2472 36875 184591 187013 187013 1 VASTLTEEGGGGGGGGGSVAPKPPR PGSQALQVVPDLSKKVASTLTEEGGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K V A P R G 2 1 0 0 0 0 2 9 0 0 1 1 0 0 3 2 2 0 0 2 0 0 25 1 2194.0978 Q8TF68;F5H8L7;E9PHB3;F5H105 Q8TF68 168 192 ZNF384 Zinc finger protein 384 yes no 3 4.759E-17 64.028 By MS/MS By MS/MS By MS/MS By matching 3 2 5 2 0.65188 0.68087 14.463 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58728 0.62335 9.0552 3 0 Median 0.77785 0.72151 14.418 2 0 Median 0.63789 0.67605 13.308 5 1 Median 0.91742 0.83945 18.867 2 0 Median 29998000 18053000 11946000 0 0 0 0 0 0 11069000 6715800 4353600 4133600 2319600 1813900 13357000 8318300 5038500 1438500 698940 739590 35087 3483 36876 184592;184593;184594;184595;184596;184597;184598;184599;184600;184601;184602;184603 187014;187015;187016;187017;187018;187019;187020 187015 7 VASVEMVK LPGHYEVLDLKPNGKVASVEMVKYHHCRDV DLKPNGKVASVEMVKYHHCRDVPLHALYDN K V A V K Y 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 8 0 861.46299 P08243;F8WEJ5;C9J057 P08243 196 203 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes no 2 0.040793 55.531 By MS/MS 1 1.0196 0.86302 NaN 1 Median NaN NaN NaN 0 0 Median 1.0196 0.86302 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5694300 2616200 3078100 0 0 0 5694300 2616200 3078100 0 0 0 0 0 0 0 0 0 0 0 0 35088 1901 36877 184604 187021 187021 1 VASVFANADKGDDEK SVRFVPRDVPLPVVRVASVFANADKGDDEK VASVFANADKGDDEKNTDNSEDSRAEDNFN R V A E K N 3 0 1 3 0 0 1 1 0 0 0 2 0 1 0 1 0 0 0 2 0 0 15 1 1564.7369 Q86U86;E7EVG2;H0Y5B5 Q86U86 1097 1111 PBRM1 Protein polybromo-1 yes no 2 0.0016746 57.348 By MS/MS By MS/MS 1 1 1.0946 1.1324 24.254 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83136 0.95392 NaN 1 0 Median 1.4412 1.3442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2979200 1540200 1439000 0 0 0 0 0 0 2185600 1146400 1039200 793670 393870 399810 0 0 0 0 0 0 35089 3273 36878 184605;184606 187022;187023;187024 187023 3 VASVFANADKGDDEKNTDNSEDSR SVRFVPRDVPLPVVRVASVFANADKGDDEK KGDDEKNTDNSEDSRAEDNFNLEKEKEDVP R V A S R A 3 1 3 5 0 0 2 1 0 0 0 2 0 1 0 3 1 0 0 2 0 0 24 2 2583.1321 Q86U86;E7EVG2;H0Y5B5 Q86U86 1097 1120 PBRM1 Protein polybromo-1 yes no 3;4 1.3431E-05 37.56 By MS/MS By MS/MS 2 2 0.96441 1.112 14.84 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87192 1.152 22.315 2 0 Median 0.99346 1.112 12.255 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18682000 9166300 9515600 0 0 0 0 0 0 15271000 7788900 7481800 3411200 1377400 2033800 0 0 0 0 0 0 35090 3273 36879 184607;184608;184609;184610 187025;187026;187027;187028;187029;187030 187027 6 VASVLGTMEMGR PEARALAMSRPPPPRVASVLGTMEMGRRMD PPRVASVLGTMEMGRRMDAPASAAAVRAFL R V A G R R 1 1 0 0 0 0 1 2 0 0 1 0 2 0 0 1 1 0 0 2 0 0 12 0 1249.6159 H3BLU7;O43488 H3BLU7 28 39 AKR7A2 Aflatoxin B1 aldehyde reductase member 2 yes no 2 4.1172E-06 132.91 By MS/MS By MS/MS By matching 2 1 1 1.2543 1.1054 19.462 4 Median 1.0681 0.99822 0.93329 2 0 Median 1.462 1.2159 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7816 1.5004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80115000 38380000 41734000 71961000 35037000 36924000 7900100 3240400 4659800 0 0 0 253140 103110 150020 0 0 0 0 0 0 35091 1206 36880;36881 184611;184612;184613;184614 187031;187032;187033;187034;187035;187036 187032 404 6 VASVMQEYTQSGGVR LVYQEPIPTAQLVQRVASVMQEYTQSGGVR VASVMQEYTQSGGVRPFGVSLLICGWNEGR R V A V R P 1 1 0 0 0 2 1 2 0 0 0 0 1 0 0 2 1 0 1 3 0 0 15 0 1610.7723 A0A024RA52;P25787;C9JCK5 A0A024RA52 114 128 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 yes no 2 2.354E-09 101.95 By MS/MS 1 0.77229 0.72945 NaN 1 Median 0.77229 0.72945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5802300 2802200 3000100 5802300 2802200 3000100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35092 7 36882 184615 187037 187037 1 VASVSQNAIVSAAGNIAR IQVYDLGQDGQGMSRVASVSQNAIVSAAGN VSQNAIVSAAGNIARTIDRSVFKPIVQIAV R V A A R T 5 1 2 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 3 0 0 18 0 1726.9326 O75694;E9PF10 O75694 315 332 NUP155 Nuclear pore complex protein Nup155 yes no 2;3 3.4075E-13 153.38 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 4 3 3 1.1481 1.2288 25.469 12 Median 1.1082 1.0687 NaN 1 0 Median 1.1191 0.95833 NaN 1 0 Median 1.1117 1.2288 5.0007 4 0 Median 1.4243 1.2377 35.725 3 0 Median 1.1781 1.2371 36.562 3 0 Median NaN NaN NaN 0 0 Median 86141000 38875000 47266000 8791200 3914200 4877000 2121700 904700 1217000 65160000 29702000 35458000 2958900 1219700 1739200 7108900 3133700 3975200 0 0 0 35093 1692 36883 184616;184617;184618;184619;184620;184621;184622;184623;184624;184625;184626;184627 187038;187039;187040;187041;187042;187043;187044;187045;187046 187041 9 VATAQDDITGDGTTSNVLIIGELLK HEMQIQHPTASLIAKVATAQDDITGDGTTS DGTTSNVLIIGELLKQADLYISEGLHPRII K V A L K Q 2 0 1 3 0 1 1 3 0 3 3 1 0 0 0 1 4 0 0 2 0 0 25 0 2543.333 P40227 P40227 80 104 CCT6A T-complex protein 1 subunit zeta yes yes 2;3 8.5453E-08 43.297 By MS/MS By MS/MS By matching 2 3 1 1.1155 1.0405 12.283 6 Median 1.0955 1.0466 3.468 2 0 Median 1.1095 0.94302 7.4043 3 0 Median 1.2785 1.3021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21643000 9634800 12008000 11193000 5004900 6188600 9111100 4035700 5075400 1338200 594290 743940 0 0 0 0 0 0 0 0 0 35094 2285 36884 184628;184629;184630;184631;184632;184633 187047;187048;187049 187049 3 VATAYRPPALR TYQAVPSEVPNEEPKVATAYRPPALRNKPI EEPKVATAYRPPALRNKPITNSKLHEEEPP K V A L R N 3 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 1 0 1 1 0 0 11 1 1213.6931 Q9BY44;F8WAE5;H7C5R5 Q9BY44 442 452 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 3 6.1101E-05 76.143 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.92662 0.88782 31.739 4 Median 0.86465 0.85188 NaN 1 0 Median 0.80392 0.73013 NaN 1 0 Median 1.3632 1.5212 NaN 1 0 Median 0.99303 0.92527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12160000 6322100 5837700 4437000 2260500 2176500 4164400 2483900 1680500 2078500 839790 1238800 1479800 737850 741910 0 0 0 0 0 0 35095 3886 36885 184634;184635;184636;184637 187050;187051;187052 187050 3 VATFHDCEDAAR LVSAGCYALGTVGYRVATFHDCEDAARELQ GYRVATFHDCEDAARELQSQIQEARADLAR R V A A R E 3 1 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1390.5936 Q9P2X0 Q9P2X0 61 72 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 yes yes 3 0.0037696 35.523 By MS/MS 1 1.3058 1.0562 NaN 1 Median NaN NaN NaN 0 0 Median 1.3058 1.0562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 997450 414590 582870 0 0 0 997450 414590 582870 0 0 0 0 0 0 0 0 0 0 0 0 35096 4231 36886 184638 187053 187053 1 VATGQELSNNILDTVFK AHRPVRLAEFKRAVKVATGQELSNNILDTV TGQELSNNILDTVFKIFDLDGDECLSHEEF K V A F K I 1 0 2 1 0 1 1 1 0 1 2 1 0 1 0 1 2 0 0 2 0 0 17 0 1847.9629 Q8IYU8 Q8IYU8 356 372 MICU2 Calcium uptake protein 2, mitochondrial yes yes 2 0.0011064 53.528 By MS/MS 1 1.1766 1.0146 NaN 1 Median NaN NaN NaN 0 0 Median 1.1766 1.0146 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2200700 1055900 1144800 0 0 0 2200700 1055900 1144800 0 0 0 0 0 0 0 0 0 0 0 0 35097 3346 36887 184639 187054 187054 1 VATLNSEEESDPPTYK SFAEHRSGLVPQQIKVATLNSEEESDPPTY ATLNSEEESDPPTYKDAFPPLPEKAACLES K V A Y K D 1 0 1 1 0 0 3 0 0 0 1 1 0 0 2 2 2 0 1 1 0 0 16 0 1778.821 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JQ82;C9JMQ6 Q00341 26 41 HDLBP Vigilin yes no 2 3.5009E-10 107.85 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.89417 0.78276 28.424 4 Median 0.58804 0.56574 NaN 1 1 Median 0.88764 0.75371 NaN 1 0 Median 1.0423 1.1296 NaN 1 0 Median 0.90075 0.81292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35427000 21056000 14371000 21471000 14158000 7313700 6261700 3010900 3250800 3800000 2068000 1732000 3894100 1819500 2074600 0 0 0 0 0 0 35098 4 36888 184640;184641;184642;184643 187055;187056;187057;187058;187059;187060 187057 6 VATLNSEEESDPPTYKDAFPPLPEK SFAEHRSGLVPQQIKVATLNSEEESDPPTY DPPTYKDAFPPLPEKAACLESAQEPSGAWG K V A E K A 2 0 1 2 0 0 4 0 0 0 2 2 0 1 5 2 2 0 1 1 0 0 25 1 2773.3334 Q00341;A0A024R4E5;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JHZ8;C9JHS7;C9JK79;C9JT62;C9JHN6;C9JEJ8;C9JBS3;C9JQ82 Q00341 26 50 HDLBP Vigilin yes no 3 3.6583E-05 32.952 By matching By MS/MS 1 1 0.62304 0.69746 19.777 2 Median 0.73265 0.80215 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52983 0.60644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20093000 12957000 7136000 16292000 10573000 5719600 0 0 0 3800500 2384100 1416400 0 0 0 0 0 0 0 0 0 35099 4 36889 184644;184645 187061 187061 1 VATMLATGGNR SMLSIYMDTLNIFMRVATMLATGGNRKK__ IFMRVATMLATGGNRKK_____________ R V A N R K 2 1 1 0 0 0 0 2 0 0 1 0 1 0 0 0 2 0 0 1 0 0 11 0 1089.5601 Q9H3K2 Q9H3K2 333 343 GHITM Growth hormone-inducible transmembrane protein yes yes 2 0.00016745 113.18 By MS/MS By MS/MS 1 2 1.3146 1.3186 21.704 3 Median 1.3146 1.3186 NaN 1 0 Median 1.4916 1.2745 30.568 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11937000 4390400 7546300 4709400 1653500 3055900 7227200 2736800 4490400 0 0 0 0 0 0 0 0 0 0 0 0 35100 3954 36890 184646;184647;184648 187062;187063;187064;187065;187066 187064 5 VATPLPDPMASR EIVTERSVSSRQAQKVATPLPDPMASRNVI AQKVATPLPDPMASRNVIATETSYVTGSTM K V A S R N 2 1 0 1 0 0 0 0 0 0 1 0 1 0 3 1 1 0 0 1 0 0 12 0 1253.6438 Q14126 Q14126 920 931 DSG2 Desmoglein-2 yes yes 2 0.03764 26.673 By MS/MS 1 0.55778 0.58417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55778 0.58417 NaN 1 0 Median NaN NaN NaN 0 0 Median 4711300 3212300 1499000 0 0 0 0 0 0 0 0 0 0 0 0 4711300 3212300 1499000 0 0 0 35101 2855 36891 184649 187067 187067 1 VATPMSVTSQR TPTIATPQTVSVPNKVATPMSVTSQRFTVQ VPNKVATPMSVTSQRFTVQIPPSQSTPVKP K V A Q R F 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 2 2 0 0 2 0 0 11 0 1175.5969 Q9HBM6 Q9HBM6 172 182 TAF9B Transcription initiation factor TFIID subunit 9B yes yes 2 0.0026022 53.751 By matching By MS/MS By MS/MS 1 2 2 1.0289 0.89441 27.041 5 Median 1.5231 1.4785 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79582 0.78076 8.2415 2 0 Median 1.1406 0.9719 11.751 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12969000 6256800 6712500 1718900 708930 1010000 0 0 0 5930000 2957300 2972700 5320300 2590600 2729800 0 0 0 0 0 0 35102 4022 36892 184650;184651;184652;184653;184654 187068;187069 187068 2 VATPVDWK ILRVVISLQLTAEKRVATPVDWKDGDSVMV QLTAEKRVATPVDWKDGDSVMVLPTIPEEE R V A W K D 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 2 0 0 8 0 914.48617 P30041 P30041 175 182 PRDX6 Peroxiredoxin-6 yes yes 2 0.0035928 86.794 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.0163 0.8852 31.924 7 Median 0.98555 0.91169 16.513 2 0 Median 1.0163 0.84787 52.371 3 1 Median 0.94457 0.8852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1331 0.94515 NaN 1 0 Median 109410000 57143000 52268000 71939000 38565000 33375000 25808000 12748000 13060000 11055000 5611700 5443100 0 0 0 0 0 0 608550 218170 390380 35103 2179 36893 184655;184656;184657;184658;184659;184660;184661 187070;187071;187072;187073;187074;187075;187076 187070 7 VATPVDWKDGDSVMVLPTIPEEEAK ILRVVISLQLTAEKRVATPVDWKDGDSVMV DSVMVLPTIPEEEAKKLFPKGVFTKELPSG R V A A K K 2 0 0 3 0 0 3 1 0 1 1 2 1 0 3 1 2 1 0 4 0 0 25 1 2725.352 P30041 P30041 175 199 PRDX6 Peroxiredoxin-6 yes yes 3 0.0038286 24.153 By MS/MS By MS/MS 1 1 0.69364 0.66888 15.01 2 Median 0.59181 0.60153 NaN 1 0 Median 0.81299 0.74378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15613000 9141900 6470700 12528000 7456700 5071800 3084200 1685300 1398900 0 0 0 0 0 0 0 0 0 0 0 0 35104 2179 36894 184662;184663 187077;187078;187079;187080;187081;187082 187077 6 VATQAVEDVLNIAK FIGESLSSRSFNINRVATQAVEDVLNIAKR RVATQAVEDVLNIAKRQGNLSLPLNRELVE R V A A K R 3 0 1 1 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 3 0 0 14 0 1469.809 A0A0C4DGV3;B7Z8V7;Q4G0N4 A0A0C4DGV3 131 144 NADK2 NAD kinase 2, mitochondrial yes no 2 4.5013E-08 150.46 By MS/MS By MS/MS By matching 1 1 1 1.2715 0.98523 12.424 3 Plateau 0.96605 0.8939 NaN 1 0 Median 1.3433 1.144 NaN 1 0 Median 0.92564 0.98523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53624000 20557000 33068000 13428000 6239000 7189300 35776000 12567000 23209000 4420500 1750700 2669800 0 0 0 0 0 0 0 0 0 35105 255 36895 184664;184665;184666 187083;187084;187085 187084 3 VATSSLDQTVK PITDLHCGFGGPLARVATSSLDQTVKLWEV PLARVATSSLDQTVKLWEVSSGELLLSVLF R V A V K L 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 11 0 1147.6085 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0;K7EML4 U3KQC1 151 161 WDR18 WD repeat-containing protein 18 yes no 2 0.00021142 98.048 By matching By MS/MS By MS/MS By matching 1 2 2 2 1.0555 1.0355 18.614 7 Median NaN NaN NaN 0 0 Median 1.0258 0.87761 NaN 1 0 Median 1.065 1.0963 8.0756 2 0 Median 1.1939 1.0361 29.178 2 1 Median NaN NaN NaN 0 0 Median 1.1432 0.95187 27.385 2 0 Median 16586000 7711900 8874500 0 0 0 1393200 721440 671740 9256600 4509400 4747200 5047500 2077200 2970300 0 0 0 889120 403820 485310 35106 147 36896 184667;184668;184669;184670;184671;184672;184673 187086;187087;187088 187086 3 VATVADTDDHR MKLEVVDKRNPMFIRVATVADTDDHRVKVH MFIRVATVADTDDHRVKVHFDGWNNCYDYW R V A H R V 2 1 0 3 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 2 0 0 11 0 1198.5578 Q96JM7 Q96JM7 494 504 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 yes yes 2;3 0.0012628 57.859 By matching By MS/MS By MS/MS By matching 1 5 4 1 0.89761 0.94747 23.467 11 Median 1.222 1.1773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88508 0.89699 7.9778 5 0 Median 1.2888 1.113 39.789 4 0 Median 0.89761 0.93476 NaN 1 0 Median NaN NaN NaN 0 0 Median 6813500 3418100 3395400 102170 55605 46566 0 0 0 4699700 2377000 2322700 1841100 895440 945690 170560 90060 80496 0 0 0 35107 3688 36897 184674;184675;184676;184677;184678;184679;184680;184681;184682;184683;184684 187089;187090;187091;187092;187093;187094;187095;187096 187094 8 VATVSLPR IMLIKLSSPATLNSRVATVSLPRSCAAAGT PATLNSRVATVSLPRSCAAAGTECLISGWG R V A P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 CON__P00761 CON__P00761 108 115 yes yes 2 3.8378E-09 138.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 12 18 16 11 12 0.0020348 0.0019054 158.11 56 Median 0.0035077 0.0032354 69.789 7 6 Median 0.0013332 0.0011113 132.16 8 7 Median 0.0026752 0.0027123 168.87 12 12 Median 0.00086608 0.00075253 153.16 10 9 Median 0.0013617 0.0013239 157.94 7 5 Median 0.002946 0.0023102 193.05 12 10 Median 112540000000 112460000000 78605000 17079000000 17056000000 22628000 11328000000 11318000000 10146000 25105000000 25090000000 15197000 21101000000 21096000000 5841300 15581000000 15570000000 11108000 22343000000 22329000000 13685000 + 35108 737 36898 184685;184686;184687;184688;184689;184690;184691;184692;184693;184694;184695;184696;184697;184698;184699;184700;184701;184702;184703;184704;184705;184706;184707;184708;184709;184710;184711;184712;184713;184714;184715;184716;184717;184718;184719;184720;184721;184722;184723;184724;184725;184726;184727;184728;184729;184730;184731;184732;184733;184734;184735;184736;184737;184738;184739;184740;184741;184742;184743;184744;184745;184746;184747;184748;184749;184750;184751;184752;184753;184754;184755;184756;184757;184758;184759;184760;184761;184762;184763;184764;184765 187097;187098;187099;187100;187101;187102;187103;187104;187105;187106;187107;187108;187109;187110;187111;187112;187113;187114;187115;187116;187117;187118;187119;187120;187121;187122;187123;187124;187125;187126;187127;187128;187129;187130;187131;187132;187133;187134;187135;187136;187137;187138;187139;187140;187141;187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157;187158;187159;187160;187161;187162;187163;187164;187165;187166;187167;187168;187169;187170;187171;187172;187173;187174;187175;187176;187177;187178;187179;187180;187181;187182;187183;187184;187185;187186;187187;187188;187189;187190;187191;187192;187193;187194;187195;187196;187197;187198;187199;187200;187201;187202;187203;187204;187205;187206;187207;187208;187209;187210;187211;187212;187213;187214;187215;187216;187217;187218;187219;187220;187221;187222;187223;187224;187225;187226;187227;187228;187229;187230;187231;187232;187233;187234;187235;187236;187237;187238;187239;187240;187241;187242;187243;187244;187245;187246;187247;187248;187249;187250;187251;187252;187253;187254;187255;187256;187257;187258;187259;187260;187261;187262;187263;187264;187265;187266;187267;187268;187269;187270;187271;187272;187273;187274;187275;187276;187277;187278;187279;187280;187281;187282;187283;187284;187285;187286;187287;187288;187289;187290;187291;187292;187293;187294;187295;187296;187297;187298;187299;187300;187301;187302;187303;187304;187305;187306;187307;187308;187309;187310;187311;187312;187313;187314;187315;187316;187317;187318;187319;187320;187321;187322;187323;187324;187325;187326;187327;187328;187329;187330;187331;187332;187333;187334;187335;187336;187337;187338;187339;187340;187341;187342;187343;187344;187345;187346;187347;187348;187349;187350;187351;187352;187353;187354;187355;187356;187357;187358;187359;187360;187361;187362;187363;187364;187365;187366;187367;187368;187369;187370;187371;187372;187373;187374;187375;187376;187377;187378;187379;187380;187381;187382;187383;187384 187143 288 VATWFNQPAR GMVLKPHFHKDWQRRVATWFNQPARKIRRR DWQRRVATWFNQPARKIRRRKARQAKARRI R V A A R K 2 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 10 0 1188.604 P26373;J3QSB4;H3BTH3 P26373 22 31 RPL13 60S ribosomal protein L13 yes no 2 6.8568E-05 133.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 2 3 1 0.99436 0.92768 12.898 15 Median 0.90034 0.85395 7.5161 4 0 Median 1.0486 0.86743 12.872 4 1 Median 1.0726 1.03 NaN 1 0 Median 1.4063 1.0888 22.654 2 0 Median 0.96767 0.98264 2.2657 3 2 Median 1.2054 0.96298 NaN 1 0 Median 430670000 209390000 221280000 190220000 97425000 92791000 39980000 19056000 20924000 28999000 13894000 15105000 5561300 2720600 2840700 122440000 58741000 63694000 43480000 17558000 25922000 35109 2144 36899 184766;184767;184768;184769;184770;184771;184772;184773;184774;184775;184776;184777;184778;184779;184780 187385;187386;187387;187388;187389;187390;187391;187392;187393;187394;187395;187396;187397;187398;187399;187400;187401;187402;187403;187404;187405;187406;187407;187408;187409;187410;187411 187397 27 VATWFNQPARK GMVLKPHFHKDWQRRVATWFNQPARKIRRR WQRRVATWFNQPARKIRRRKARQAKARRIA R V A R K I 2 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 11 1 1316.699 P26373;J3QSB4;H3BTH3 P26373 22 32 RPL13 60S ribosomal protein L13 yes no 2;3 0.00035757 78.334 By MS/MS By matching By matching By MS/MS 2 1 1 1 1.0291 1.0872 92.502 5 Median 1.0973 1.0993 8.9944 2 1 Median 0.15205 0.14879 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5581 1.3792 NaN 1 0 Median 1.0252 1.0872 NaN 1 0 Median NaN NaN NaN 0 0 Median 39170000 19657000 19513000 17050000 8033000 9016800 3736000 2910600 825330 0 0 0 1357200 605860 751370 17027000 8107900 8919500 0 0 0 35110 2144 36900 184781;184782;184783;184784;184785 187412;187413;187414;187415;187416;187417 187416 6 VATYWSGVGLTGSR WEECGYHLAPSDLRRVATYWSGVGLTGSRQ RVATYWSGVGLTGSRQTMFYTEVTDAQRSG R V A S R Q 1 1 0 0 0 0 0 3 0 0 1 0 0 0 0 2 2 1 1 2 0 0 14 0 1452.7361 O95848 O95848 139 152 NUDT14 Uridine diphosphate glucose pyrophosphatase yes yes 2 0.0024437 42.976 By MS/MS 1 1.7786 1.6828 NaN 1 Median 1.7786 1.6828 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7288400 2123700 5164800 7288400 2123700 5164800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35111 1798 36901 184786 187418 187418 1 VAVAIPNRPPDAVLTDTTSLNQAALYR GSGGFGGKRTSDKVKVAVAIPNRPPDAVLT VLTDTTSLNQAALYRLSGDWNPLHIDPNFA K V A Y R L 5 2 2 2 0 1 0 0 0 1 3 0 0 0 3 1 3 0 1 3 0 0 27 1 2865.5349 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 480 506 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 3 1.3565E-19 65.423 By MS/MS By matching By MS/MS By MS/MS 4 2 2 2 0.89912 0.89152 65.516 10 Median 0.827 0.89152 76.183 4 1 Median 0.8752 0.84127 26.116 2 0 Median 1.6959 1.8137 115.62 2 0 Median 1.118 1.0164 27.01 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70626000 34259000 36367000 30291000 15431000 14859000 1930200 990000 940210 28453000 13694000 14759000 9951900 4143700 5808200 0 0 0 0 0 0 35112 393 36902 184787;184788;184789;184790;184791;184792;184793;184794;184795;184796 187419;187420;187421;187422;187423;187424;187425;187426;187427;187428;187429 187420 11 VAVATILEK LIKIFLLECNVREVRVAVATILEKTLDSAL NVREVRVAVATILEKTLDSALFYQDKLKSL R V A E K T 2 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 9 0 942.57498 Q9UPU5 Q9UPU5 2236 2244 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 0.0098224 48.794 By MS/MS 1 1.7322 1.6532 NaN 1 Median 1.7322 1.6532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2781400 820700 1960700 2781400 820700 1960700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35113 4357 36903 184797 187430 187430 1 VAVEEVDEEGK ESRSSFSQHARTSGRVAVEEVDEEGKFVRL TSGRVAVEEVDEEGKFVRLRNKSNEDQSMG R V A G K F 1 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1202.5667 P02545;A0A0C4DGC5 P02545 440 450 LMNA Prelamin-A/C;Lamin-A/C no no 2 2.4863E-06 160.59 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 4 6 1.2077 1.1069 17.793 17 Median NaN NaN NaN 0 0 Median 0.99532 0.86576 NaN 1 0 Median 1.0595 1.0295 10.53 2 0 Median 1.3976 1.1863 27.766 4 0 Median 1.0684 1.0959 7.9891 4 0 Median 1.3426 1.101 18.59 6 0 Median 386780000 170930000 215850000 0 0 0 1049700 537510 512150 106680000 48588000 58093000 163000000 67502000 95502000 79609000 39021000 40588000 36438000 15285000 21153000 35114 1834 36904 184798;184799;184800;184801;184802;184803;184804;184805;184806;184807;184808;184809;184810;184811;184812;184813;184814 187431;187432;187433;187434;187435;187436;187437;187438;187439;187440;187441;187442;187443;187444;187445;187446;187447;187448;187449;187450;187451;187452;187453;187454;187455;187456;187457;187458;187459;187460;187461 187456 30 VAVEEVDEEGKFVR ESRSSFSQHARTSGRVAVEEVDEEGKFVRL RVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ R V A V R L 1 1 0 1 0 0 4 1 0 0 0 1 0 1 0 0 0 0 0 4 0 0 14 1 1604.8046 P02545;A0A0C4DGC5 P02545 440 453 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 4.7428E-16 189.72 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 7 6 11 12 1.1747 1.1701 22.275 37 Median NaN NaN NaN 0 0 Median 1.1606 1.0618 NaN 1 0 Median 1.0864 1.1589 24.646 7 1 Median 1.5509 1.3972 18.228 6 0 Median 1.0351 1.0886 9.9396 11 0 Median 1.3262 1.157 28.005 12 0 Median 1346100000 620380000 725750000 0 0 0 1420600 580920 839630 228760000 106330000 122430000 74564000 29645000 44918000 842740000 398280000 444460000 198650000 85544000 113100000 35115 1834 36905 184815;184816;184817;184818;184819;184820;184821;184822;184823;184824;184825;184826;184827;184828;184829;184830;184831;184832;184833;184834;184835;184836;184837;184838;184839;184840;184841;184842;184843;184844;184845;184846;184847;184848;184849;184850;184851 187462;187463;187464;187465;187466;187467;187468;187469;187470;187471;187472;187473;187474;187475;187476;187477;187478;187479;187480;187481;187482;187483;187484;187485;187486;187487;187488;187489;187490;187491;187492;187493;187494;187495;187496;187497;187498;187499;187500;187501;187502;187503;187504;187505;187506;187507;187508;187509;187510;187511;187512;187513;187514;187515;187516;187517;187518;187519;187520 187500 59 VAVEYLDPSPEVQK FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK RVAVEYLDPSPEVQKKKYAFKCHRLKENNI R V A Q K K 1 0 0 1 0 1 2 0 0 0 1 1 0 0 2 1 0 0 1 3 0 0 14 0 1572.8035 O43684;J3QT28 O43684 203 216 BUB3 Mitotic checkpoint protein BUB3 yes no 2 3.4707E-08 105.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 1 1 0.70256 0.67103 12.086 9 Median 0.72683 0.67103 NaN 1 0 Median 0.65909 0.56016 9.4115 2 0 Median 0.7032 0.71558 9.6371 3 0 Plateau 0.79589 0.67717 NaN 1 0 Median 0.71377 0.71096 NaN 1 0 Median 0.63121 0.53062 NaN 1 0 Median 276010000 154910000 121100000 19585000 11148000 8436400 14011000 8195700 5815200 235340000 131810000 103520000 1075800 584960 490800 4946300 2624700 2321600 1055100 545960 509170 35116 1357 36906 184852;184853;184854;184855;184856;184857;184858;184859;184860 187521;187522;187523;187524;187525;187526;187527;187528;187529;187530;187531;187532;187533;187534 187527 14 VAVEYLDPSPEVQKK FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK VAVEYLDPSPEVQKKKYAFKCHRLKENNIE R V A K K K 1 0 0 1 0 1 2 0 0 0 1 2 0 0 2 1 0 0 1 3 0 0 15 1 1700.8985 O43684;J3QT28 O43684 203 217 BUB3 Mitotic checkpoint protein BUB3 yes no 2;3 3.7464E-06 91.937 By MS/MS By MS/MS 3 2 0.70795 0.7065 7.4497 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70795 0.73978 3.9032 3 0 Median 0.73761 0.65681 5.93 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46154000 27159000 18995000 0 0 0 0 0 0 35234000 21148000 14086000 10920000 6011400 4909100 0 0 0 0 0 0 35117 1357 36907 184861;184862;184863;184864;184865 187535;187536;187537;187538;187539;187540;187541;187542;187543 187539 9 VAVFFGGLSIK SKEYERFSKYMPNVKVAVFFGGLSIKKDEE PNVKVAVFFGGLSIKKDEEVLKKNCPHIVV K V A I K K 1 0 0 0 0 0 0 2 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1136.6594 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4;F6R6M7;F6QYI9;A0A0G2JJL7;A0A140T9N3;A0A140T9K2 Q13838 145 155 DDX39B Spliceosome RNA helicase DDX39B yes no 2 0.0003569 71.349 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 3 5 2 6 1 1.1141 1.0856 28.155 18 Median 1.3342 1.2735 NaN 1 0 Median 0.84478 0.75188 30.502 3 0 Median 0.92166 0.93047 23.638 5 0 Median 1.4289 1.2745 11.47 2 0 Median 1.0699 1.0394 29.85 6 0 Median 1.7076 1.4341 NaN 1 0 Median 225600000 100240000 125350000 3333100 1453900 1879100 15555000 6720600 8834100 60333000 27334000 32999000 118870000 51477000 67393000 26339000 12771000 13568000 1169800 487860 681970 35118 2842 36908 184866;184867;184868;184869;184870;184871;184872;184873;184874;184875;184876;184877;184878;184879;184880;184881;184882;184883 187544;187545;187546;187547;187548;187549;187550;187551;187552 187552 9 VAVFFGGLSIKK SKEYERFSKYMPNVKVAVFFGGLSIKKDEE NVKVAVFFGGLSIKKDEEVLKKNCPHIVVG K V A K K D 1 0 0 0 0 0 0 2 0 1 1 2 0 2 0 1 0 0 0 2 0 0 12 1 1264.7543 Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6WLT2;A0A0A0MT12;F6TRA5;A0A140T996;A0A140T9X9;F6S4E6;F6UJC5;A0A140TA18;A0A140T9K1;A0A140T973;A0A140T9L4;F6R6M7;F6QYI9;A0A0G2JJL7;A0A140T9N3;A0A140T9K2 Q13838 145 156 DDX39B Spliceosome RNA helicase DDX39B yes no 2;3 0.0010192 43.991 By MS/MS By matching By MS/MS 2 2 2 1.2265 1.2346 14.371 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1308 1.1851 19.296 2 0 Median 1.367 1.2985 12.09 2 0 Median 1.0665 1.1286 17.652 2 0 Median NaN NaN NaN 0 0 Median 21623000 10035000 11588000 0 0 0 0 0 0 13914000 6507200 7407200 2606200 1145400 1460900 5102400 2382100 2720300 0 0 0 35119 2842 36909 184884;184885;184886;184887;184888;184889 187553;187554;187555;187556;187557 187553 5 VAVFTENASEVK SVLSLPYPFASEINKVAVFTENASEVKIAE INKVAVFTENASEVKIAEENGAAFAGGTSL K V A V K I 2 0 1 0 0 0 2 0 0 0 0 1 0 1 0 1 1 0 0 3 0 0 12 0 1292.6612 Q9BYD6;H0Y8N7 Q9BYD6 157 168 MRPL1 39S ribosomal protein L1, mitochondrial yes no 2 5.2533E-06 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.3731 1.274 25.603 6 Median 1.0521 0.95526 NaN 1 0 Median 1.3105 1.1013 NaN 1 0 Median 1.2639 1.2152 NaN 1 0 Median 1.5557 1.3976 6.4011 2 0 Median 1.4388 2.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median 49017000 20849000 28168000 25041000 11857000 13184000 7325800 2737600 4588200 7583100 3087200 4495900 7339100 2612900 4726300 1728300 554800 1173500 0 0 0 35120 3890 36910 184890;184891;184892;184893;184894;184895 187558;187559;187560;187561;187562;187563;187564 187564 7 VAVGELTDEDVK ATVILANHVAKKDNKVAVGELTDEDVKMIT DNKVAVGELTDEDVKMITSLSKDQQIGEKI K V A V K M 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 3 0 0 12 0 1273.6402 P49736;H0Y8E6 P49736 451 462 MCM2 DNA replication licensing factor MCM2 yes no 2 5.3523E-06 127.76 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 0.92233 0.86712 10.302 7 Median 0.90758 0.86712 NaN 1 0 Median 1.1564 0.99249 4.2117 2 0 Median 0.77026 0.82512 1.7711 2 0 Median 1.0315 0.89826 16.13 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 188210000 94465000 93745000 78790000 38551000 40238000 35764000 15847000 19917000 63489000 35349000 28141000 10167000 4718300 5449100 0 0 0 0 0 0 35121 2393 36911 184896;184897;184898;184899;184900;184901;184902 187565;187566;187567;187568;187569;187570;187571;187572;187573;187574;187575;187576;187577 187576 13 VAVGQEQAFSVNTR PLDLSKIKVQGLNSKVAVGQEQAFSVNTRG KVAVGQEQAFSVNTRGAGGQGQLDVRMTSP K V A T R G 2 1 1 0 0 2 1 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 14 0 1504.7634 Q14315 Q14315 978 991 FLNC Filamin-C yes yes 2;3 3.5895E-98 269.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 2 1 2 1.1709 1.1533 34.749 13 Median 1.3259 1.2603 2.5015 3 0 Plateau 1.0793 0.89092 8.8451 2 0 Median 1.5229 1.6612 20.153 3 3 Plateau 1.2034 1.0529 12.88 2 1 Median 3.0553 3.2101 NaN 1 1 Median 1.131 0.93397 2.2905 2 0 Median 164330000 71191000 93142000 72979000 30428000 42551000 55698000 25703000 29995000 20708000 8983900 11724000 8486300 3719300 4767000 3498100 978750 2519400 2963300 1377300 1586000 35122 2871 36912 184903;184904;184905;184906;184907;184908;184909;184910;184911;184912;184913;184914;184915 187578;187579;187580;187581;187582;187583;187584;187585;187586;187587;187588;187589;187590;187591;187592;187593;187594;187595;187596;187597;187598;187599;187600;187601;187602;187603 187580 26 VAVHHAEAEALAR HVHFDHSGGLYQFDRVAVHHAEAEALARGD DRVAVHHAEAEALARGDNFETVTWLSDSEV R V A A R G 5 1 0 0 0 0 2 0 2 0 1 0 0 0 0 0 0 0 0 2 0 0 13 0 1372.7211 Q68D91 Q68D91 98 110 MBLAC2 Metallo-beta-lactamase domain-containing protein 2 yes yes 3 0.0090341 26.541 By MS/MS By MS/MS 1 1 1.1481 1.0403 38.505 2 Median 0.82268 0.79234 NaN 1 0 Median 1.6022 1.3659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1731000 696720 1034200 801560 388450 413110 929400 308270 621120 0 0 0 0 0 0 0 0 0 0 0 0 35123 3125 36913 184916;184917 187604;187605;187606 187604 3 VAVLENQNK CRRKKKEYVKCLENRVAVLENQNKTLIEEL KCLENRVAVLENQNKTLIEELKALKDLYCH R V A N K T 1 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5506 P16220;E9PAR2;G5E998 P16220 315 323 CREB1;CREM Cyclic AMP-responsive element-binding protein 1 no no 2 0.0036742 63.48 By MS/MS By MS/MS By matching By MS/MS 3 3 2 3 1.033 0.93547 6.4427 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99764 1.0292 5.0281 3 0 Median 1.0487 0.88492 0.68596 3 0 Median 0.95757 0.98204 0.05194 2 0 Median 1.115 0.93547 3.4522 3 0 Plateau 8420200 4239500 4180600 0 0 0 0 0 0 3596200 1731400 1864700 1815300 999100 816170 1708200 913320 794890 1300500 595670 704850 35124 2027 36914 184918;184919;184920;184921;184922;184923;184924;184925;184926;184927;184928 187607;187608;187609;187610;187611;187612 187610 6 VAVLGASGGIGQPLSLLLK ALRRSFSTSAQNNAKVAVLGASGGIGQPLS GASGGIGQPLSLLLKNSPLVSRLTLYDIAH K V A L K N 2 0 0 0 0 1 0 4 0 1 5 1 0 0 1 2 0 0 0 2 0 0 19 0 1792.0822 P40926 P40926 27 45 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 2.2123E-80 232.5 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 1.2671 1.0681 12.653 9 Median 0.99011 0.92819 7.1087 2 1 Median 1.3107 1.1035 4.6364 4 1 Median 0.94497 0.90717 0.85042 2 0 Median NaN NaN NaN 0 0 Median 1.2671 1.2522 NaN 1 0 Median NaN NaN NaN 0 0 Median 608420000 257660000 350760000 74719000 39563000 35156000 510640000 206570000 304070000 22280000 11190000 11089000 0 0 0 775960 329070 446890 0 0 0 35125 2292 36915 184929;184930;184931;184932;184933;184934;184935;184936;184937 187613;187614;187615;187616;187617;187618;187619;187620;187621;187622;187623;187624;187625 187625 13 VAVLLLAGGQGTR QAWESEGLFQISQNKVAVLLLAGGQGTRLG NKVAVLLLAGGQGTRLGVAYPKGMYDVGLP K V A T R L 2 1 0 0 0 1 0 3 0 0 3 0 0 0 0 0 1 0 0 2 0 0 13 0 1253.7456 Q16222 Q16222 103 115 UAP1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase no no 2 0.00073699 66.435 By MS/MS By matching By matching By matching 2 2 1 1 1.2525 1.1813 15.464 6 Median 1.42 1.3898 19.56 2 0 Median 1.3617 1.1801 10.449 2 0 Median 1.0926 1.1529 NaN 1 0 Median 1.1581 1.0223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13948000 5886300 8062000 9724700 4027200 5697500 2701300 1134000 1567300 1388100 662240 725870 134110 62765 71348 0 0 0 0 0 0 35126 2981 36916 184938;184939;184940;184941;184942;184943 187626;187627 187626 2 VAVLQALASTVNR GIEEVVIPKKKTWDKVAVLQALASTVNRDT DKVAVLQALASTVNRDTTAVPYVFQDDPYL K V A N R D 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1340.7776 Q96EY7;B8ZZQ4 Q96EY7 68 80 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes no 2 5.9879E-07 115.78 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.3885 1.2669 18.984 7 Median 1.0237 0.97909 6.3279 2 0 Median 1.4162 1.2336 3.7636 2 0 Median 1.2262 1.3119 NaN 1 0 Median 1.7551 1.527 NaN 1 0 Median 1.4784 1.5597 NaN 1 0 Median NaN NaN NaN 0 0 Median 28366000 12532000 15834000 13378000 6432400 6945200 11993000 4759900 7233400 2403500 1090000 1313500 132670 44032 88636 458530 205250 253280 0 0 0 35127 3644 36917 184944;184945;184946;184947;184948;184949;184950 187628;187629;187630;187631;187632;187633;187634;187635 187628 8 VAVLSQNR NVAKKWQVSREDQDKVAVLSQNRTENAQKA SREDQDKVAVLSQNRTENAQKAGHFDKEIV K V A N R T 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 885.50321 Q9BWD1 Q9BWD1 181 188 ACAT2 Acetyl-CoA acetyltransferase, cytosolic yes yes 2 0.0025526 107.32 By MS/MS By matching By matching 1 1 1 1.083 1.2167 12.141 3 Plateau NaN NaN NaN 0 0 Median 1.4198 1.2386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96608 1.0451 NaN 1 0 Median 1.083 0.97904 NaN 1 0 Median 15599000 6820100 8778500 0 0 0 11287000 4722500 6564100 0 0 0 0 0 0 3339800 1719900 1619900 972130 377640 594490 35128 3868 36918 184951;184952;184953 187636 187636 1 VAVLVKPEHENR LDYRPIAMQSLWNIKVAVLVKPEHENRISH NIKVAVLVKPEHENRISHVSTSSVKTGIAN K V A N R I 1 1 1 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 3 0 0 12 1 1389.7728 O15357;A0A0A0MTP6 O15357 510 521 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 3 0.00019712 67.519 By matching By MS/MS 1 1 1.0563 1.0399 14.219 2 Median 1.1227 1.1499 NaN 1 0 Median 0.99383 0.94044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3009300 1467900 1541500 650420 304090 346320 2358900 1163800 1195100 0 0 0 0 0 0 0 0 0 0 0 0 35129 1539 36919 184954;184955 187637;187638 187638 2 VAVNALAVGEPGTASK PSPAPLTPQVGVPGRVAVNALAVGEPGTAS AVNALAVGEPGTASKPASPIGGPTQEEKTR R V A S K P 4 0 1 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 0 3 0 0 16 0 1482.8042 Q96L91 Q96L91 1714 1729 EP400 E1A-binding protein p400 yes yes 2 0.00013844 63.091 By MS/MS By MS/MS 1 1 0.72973 0.74302 6.538 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6552 0.70945 NaN 1 0 Median 0.81274 0.77818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5188000 2885200 2302800 0 0 0 0 0 0 3537300 2049300 1488000 1650700 835920 814790 0 0 0 0 0 0 35130 3700 36920 184956;184957 187639;187640;187641 187639 3 VAVNALAVGEPGTASKPASPIGGPTQEEK PSPAPLTPQVGVPGRVAVNALAVGEPGTAS SKPASPIGGPTQEEKTRLLKERLDQIYLVN R V A E K T 5 0 1 0 0 1 3 4 0 1 1 2 0 0 4 2 2 0 0 3 0 0 29 1 2774.445 Q96L91 Q96L91 1714 1742 EP400 E1A-binding protein p400 yes yes 3 2.0633E-09 50.857 By MS/MS By MS/MS 2 2 0.5473 0.59281 12.863 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48046 0.54934 17.96 2 1 Median 0.61932 0.6023 9.4391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29546000 20830000 8716200 0 0 0 0 0 0 28129000 19950000 8179000 1417000 879840 537170 0 0 0 0 0 0 35131 3700 36921 184958;184959;184960;184961 187642;187643 187642 2 VAVNDAHLLQYNHR KPFKIQVLVEPDHFKVAVNDAHLLQYNHRV KVAVNDAHLLQYNHRVKKLNEISKLGISGD K V A H R V 2 1 2 1 0 1 0 0 2 0 2 0 0 0 0 0 0 0 1 2 0 0 14 0 1648.8434 P17931 P17931 211 224 LGALS3 Galectin-3 yes yes 2;3;4 9.4622E-11 109.84 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 3 1.2747 1.2283 15.738 9 Median 1.3927 1.3005 18.718 4 0 Median 1.186 0.98618 11.676 2 1 Median 1.1121 1.0686 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2474 1.2534 2.8643 2 1 Median NaN NaN NaN 0 0 Median 238620000 104230000 134390000 155600000 65233000 90369000 51941000 25214000 26728000 9364700 4289600 5075200 0 0 0 21716000 9494000 12222000 0 0 0 35132 2049 36922 184962;184963;184964;184965;184966;184967;184968;184969;184970;184971 187644;187645;187646;187647;187648;187649;187650;187651;187652;187653 187651 10 VAVPLLSSGGQVAVLELR TTPGESDGFCANKLRVAVPLLSSGGQVAVL PLLSSGGQVAVLELRKPGRLPDTALPTLQN R V A L R K 2 1 0 0 0 1 1 2 0 0 4 0 0 0 1 2 0 0 0 4 0 0 18 0 1807.0567 A0A0A6YYL4;P57737 A0A0A6YYL4 511 528 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 2 5.3749E-06 69.602 By MS/MS By MS/MS 2 3 1.3336 1.1557 21.271 5 Median 0.85108 0.83911 10.621 2 0 Median 1.3375 1.1926 5.8522 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7410800 3443300 3967600 3598000 1860500 1737500 3812900 1582800 2230100 0 0 0 0 0 0 0 0 0 0 0 0 35133 209 36923 184972;184973;184974;184975;184976 187654;187655;187656;187657 187657 4 VAVQAISADEEAPDYGSGVR VAIVSEKGEVKGFLRVAVQAISADEEAPDY ISADEEAPDYGSGVRQSGTAKISFDDQHFE R V A V R Q 4 1 0 2 0 1 2 2 0 1 0 0 0 0 1 2 0 0 1 3 0 0 20 0 2032.9702 A0A3B3ITK3;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;A0A3B3ITW6;Q12756 A0A3B3ITK3 631 650 KIF1A Kinesin-like protein KIF1A yes no 2 0.045363 19.578 By matching By MS/MS 1 1 1.0482 0.94708 33.476 2 Median 0.77181 0.74745 NaN 1 0 Median 1.4237 1.2 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4893200 2834800 2058300 3885000 2460500 1424500 1008100 374310 633800 0 0 0 0 0 0 0 0 0 0 0 0 35134 431 36924 184977;184978 187658 187658 1 VAVQAVQAMNR IEHAEFSGNLYGTSKVAVQAVQAMNRICVL GTSKVAVQAVQAMNRICVLDVDLQGVRNIK K V A N R I 3 1 1 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 3 0 0 11 0 1185.6288 B1ANH6;Q16774;B1ANH5;B1ANH0;B1ANG9;B1ANH2;B1ANH3 B1ANH6 86 96 GUK1 Guanylate kinase yes no 2 6.4155E-47 179.21 By MS/MS By MS/MS By MS/MS 2 2 1 1.5572 1.3955 13.826 4 Median 1.515 1.4387 NaN 1 1 Median 1.556 1.3159 4.0035 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.1667 1.757 NaN 1 0 Median 36132000 13485000 22646000 17662000 6187700 11475000 17494000 6945700 10549000 0 0 0 0 0 0 0 0 0 974740 351970 622770 35135 574 36925 184979;184980;184981;184982;184983 187659;187660;187661;187662;187663 187660 5 VAVQGDVVR NNCTTSEDSLVLYNRVAVQGDVVRELKAKK LVLYNRVAVQGDVVRELKAKKAPKEDVDAA R V A V R E 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 941.52943 P07814;V9GYZ6 P07814 757 765 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0004831 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1 1 0.91187 0.87622 34.312 10 Median 1.1682 1.1285 3.0209 2 0 Median 1.021 0.87622 21.278 4 1 Median 0.94095 1.0181 NaN 1 0 Median 0.5344 0.47017 NaN 1 1 Median 0.49823 0.52345 NaN 1 1 Median 0.68299 0.56034 NaN 1 0 Median 62777000 30035000 32742000 13458000 6425900 7032100 42679000 19190000 23489000 1219000 572320 646630 1234100 756250 477820 3461300 2588800 872540 725990 501990 224000 35136 1892 36926 184984;184985;184986;184987;184988;184989;184990;184991;184992;184993 187664;187665;187666;187667;187668;187669;187670;187671;187672;187673;187674 187672 11 VAVTEGCQPSR EVTYDDVPIPNSPFKVAVTEGCQPSRVQAQ SPFKVAVTEGCQPSRVQAQGPGLKEAFTNK K V A S R V 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 2 0 0 11 0 1202.5714 O75369;E7EN95 O75369 1320 1330 FLNB Filamin-B yes no 2 0.0022363 54.608 By MS/MS 1 1.2066 1.0195 NaN 1 Median NaN NaN NaN 0 0 Median 1.2066 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1500200 619890 880330 0 0 0 1500200 619890 880330 0 0 0 0 0 0 0 0 0 0 0 0 35137 1664 36927 184994 187675;187676 187676 2 VAVTPPGLAR SATYVNTEGRAQQTKVAVTPPGLAREDWKI AQQTKVAVTPPGLAREDWKIIRALSEIAGM K V A A R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 2 0 0 10 0 979.58147 P28331;B4DJ81 P28331 608 617 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.00057108 73.248 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1026 0.98462 32.835 5 Median 0.6491 0.62144 NaN 1 0 Median 1.1346 0.98462 NaN 1 0 Median 0.56497 0.60116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1026 1.1618 NaN 1 0 Median 1.3626 1.1594 NaN 1 0 Median 18323000 9625200 8697600 5053800 3392900 1660800 3074400 1068500 2005900 2932500 1923900 1008500 0 0 0 4761700 2269500 2492200 2500500 970420 1530100 35138 2165 36928 184995;184996;184997;184998;184999 187677;187678;187679;187680 187677 4 VAVVAGYGDVGK IDGIKRATDVMIAGKVAVVAGYGDVGKGCA AGKVAVVAGYGDVGKGCAQALRGFGARVII K V A G K G 2 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 1 4 0 0 12 0 1133.6081 P23526 P23526 215 226 AHCY Adenosylhomocysteinase yes yes 2 4.8065E-06 102.06 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 1 1.3188 1.2003 8.9902 13 Median 1.2718 1.1607 9.1955 4 1 Median 1.4164 1.1994 4.6272 4 0 Median 1.2021 1.1963 8.6222 2 0 Median NaN NaN NaN 0 0 Median 1.0783 1.2494 22.365 2 0 Median 1.3188 1.264 NaN 1 0 Median 678700000 295390000 383310000 332470000 148710000 183760000 296030000 124500000 171530000 46034000 20391000 25643000 0 0 0 3465900 1475300 1990600 708240 320270 387970 35139 2116 36929 185000;185001;185002;185003;185004;185005;185006;185007;185008;185009;185010;185011;185012 187681;187682;187683;187684;187685;187686;187687;187688;187689;187690;187691;187692;187693;187694;187695;187696;187697;187698;187699;187700;187701;187702 187688 22 VAVVESVIGGR MRVEVVDKRHLCRTRVAVVESVIGGRLRLV CRTRVAVVESVIGGRLRLVYEESEDRTDDF R V A G R L 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 0 4 0 0 11 0 1084.6241 Q05BQ5 Q05BQ5 304 314 MBTD1 MBT domain-containing protein 1 yes yes 2 0.00011141 122.13 By matching By matching By MS/MS 1 1 1 1.0341 0.98133 4.795 3 Median 1.0341 0.98133 NaN 1 0 Median 1.1583 1.0036 NaN 1 0 Median 0.89473 0.91543 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22369000 10444000 11924000 12532000 5523200 7009000 2366800 1041500 1325300 7469500 3879500 3590000 0 0 0 0 0 0 0 0 0 35140 2719 36930 185013;185014;185015 187703 187703 1 VAVVGNVDAGK LVRKRVGDNDFLEVRVAVVGNVDAGKSTLL LEVRVAVVGNVDAGKSTLLGVLTHGELDNG R V A G K S 2 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 4 0 0 11 0 1027.5662 O00178;F5H716 O00178 163 173 GTPBP1 GTP-binding protein 1 yes no 2 0.00071474 84.213 By MS/MS By MS/MS By MS/MS 3 1 2 1.2549 1.0825 8.2797 5 Median NaN NaN NaN 0 0 Median 1.262 1.0825 8.861 3 2 Median 1.1713 1.229 NaN 1 0 Median 1.2146 1.0545 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16703000 7668600 9034300 0 0 0 9586400 4494200 5092200 5512800 2549000 2963800 1603700 625440 978210 0 0 0 0 0 0 35141 1446 36931 185016;185017;185018;185019;185020;185021 187704;187705;187706;187707;187708;187709 187704 6 VAVVNQIAR RFESLEPEMNNQASRVAVVNQIARQLMHSG NNQASRVAVVNQIARQLMHSGHPSEKEIKA R V A A R Q 2 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 9 0 968.57671 Q01082;A0A087WUZ3 Q01082 905 913 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00048655 121.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 2 1.0774 0.97143 14.591 10 Median NaN NaN NaN 0 0 Median 1.2916 1.0647 8.4581 2 0 Median 0.82199 0.89895 12.915 2 0 Median 1.071 0.93978 5.2465 2 0 Median 0.81998 0.85096 32.862 2 0 Median 1.1458 0.93468 4.8913 2 0 Median 292120000 138140000 153990000 0 0 0 93475000 40773000 52702000 91022000 46506000 44516000 21729000 10452000 11277000 31665000 14997000 16668000 54230000 25407000 28822000 35142 2681 36932 185022;185023;185024;185025;185026;185027;185028;185029;185030;185031 187710;187711;187712;187713;187714;187715;187716;187717;187718 187710 9 VAVVQGAGLR V A L R 2 1 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 3 0 0 10 0 968.57671 REV__Q9UN73 yes yes 2 0.00047073 119.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1.0774 0.9762 10.296 8 Median 1.2093 1.135 NaN 1 1 Median 1.2573 1.0029 NaN 1 0 Median 0.82199 0.89895 12.915 2 0 Median 1.0243 0.90555 NaN 1 0 Median 1.0551 1.0736 NaN 1 0 Median 1.1458 0.93468 4.8913 2 0 Median 289780000 137720000 152060000 14654000 7010000 7643900 82406000 36206000 46200000 91022000 46506000 44516000 18714000 9234800 9478900 28755000 13354000 15401000 54230000 25407000 28822000 + 35143 4559 36933 185032;185033;185034;185035;185036;185037;185038;185039 187719;187720;187721;187722;187723;187724;187725;187726 187720 8 VAVVQYSGTGQQRPER RFLTAGRTDPAHDVRVAVVQYSGTGQQRPE AVVQYSGTGQQRPERASLQFLQNYTALASA R V A E R A 1 2 0 0 0 3 1 2 0 0 0 0 0 0 1 1 1 0 1 3 0 0 16 1 1773.9122 A0A087X0S5;P12109 A0A087X0S5 871 886 COL6A1 Collagen alpha-1(VI) chain yes no 3 2.7059E-05 74.678 By MS/MS 1 1.2768 1.2309 NaN 1 Median NaN NaN NaN 0 0 Median 1.2768 1.2309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4067300 1501600 2565700 0 0 0 4067300 1501600 2565700 0 0 0 0 0 0 0 0 0 0 0 0 35144 113 36934 185040 187727 187727 1 VAVYVPGSK KINDFVLSPGPQPYKVAVYVPGSKGAPSFV GPQPYKVAVYVPGSKGAPSFVRLYQYPNFA K V A S K G 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 3 0 0 9 0 918.51747 Q9BY44;F8WAE5;C9IZE1 Q9BY44 184 192 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.015853 43.185 By MS/MS 1 0.78143 0.67468 NaN 1 Median NaN NaN NaN 0 0 Median 0.78143 0.67468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2310600 1338200 972400 0 0 0 2310600 1338200 972400 0 0 0 0 0 0 0 0 0 0 0 0 35145 3886 36935 185041 187728 187728 1 VAYAAQPALK KITAQQITTPGAQQKVAYAAQPALKTQFLT GAQQKVAYAAQPALKTQFLTTPISQAQKLA K V A L K T 4 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1030.5811 Q96L91;A0A0A0MR70 Q96L91 3009 3018 EP400 E1A-binding protein p400 yes no 2 0.0045576 52.786 By MS/MS 1 1.4493 1.5753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4493 1.5753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2931100 1626400 1304700 0 0 0 0 0 0 2931100 1626400 1304700 0 0 0 0 0 0 0 0 0 35146 3700 36936 185042 187729 187729 1 VAYIPDEMAAQQNPLQQPR LDKLNGFQLENFTLKVAYIPDEMAAQQNPL PDEMAAQQNPLQQPRGRRGLGQRGSSRQGS K V A P R G 3 1 1 1 0 4 1 0 0 1 1 0 1 0 3 0 0 0 1 1 0 0 19 0 2168.0684 O00425 O00425 151 169 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 9.3356E-18 97.214 By MS/MS By matching 3 1 0.66109 0.64071 9.2029 4 Median 0.69043 0.67741 7.7501 3 2 Median NaN NaN NaN 0 0 Median 0.54464 0.57827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19503000 11942000 7560900 16404000 9645500 6758900 0 0 0 3098700 2296700 801990 0 0 0 0 0 0 0 0 0 35147 1462 36937 185043;185044;185045;185046 187730;187731;187732;187733 187732 4 VAYPQADSNLR GIRTVIIRQHEIVLKVAYPQADSNLRNIVT IVLKVAYPQADSNLRNIVTEQLVALIDCFL K V A L R N 2 1 1 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 11 0 1232.6149 Q8WUM0 Q8WUM0 788 798 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00016938 91.867 By MS/MS By MS/MS By matching 1 1 1 0.98019 0.94773 10.078 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80259 0.88254 NaN 1 0 Median 1.1971 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14587000 7668200 6918700 0 0 0 0 0 0 10584000 6170900 4413200 3515200 1305200 2210000 0 0 0 487550 192030 295520 35148 3492 36938 185047;185048;185049 187734;187735;187736 187734 3 VAYVSFGPHAGK ______________________________ VGRVAYVSFGPHAGKLVAIVDVIDQNRALV R V A G K L 2 0 0 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 1 2 0 0 12 0 1231.635 E7EPB3;P50914 E7EPB3 12 23 RPL14 60S ribosomal protein L14 yes no 2;3 4.0931E-06 113.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 2 6 6 1.1639 1.0539 22.799 26 Median 1.0975 1.0123 16.551 4 0 Median 1.0664 0.88327 35.144 6 2 Median 1.18 1.1068 1.0252 2 0 Median 1.202 0.99679 9.077 2 0 Median 1.1922 1.2421 20.787 6 1 Median 1.2967 1.0628 17.021 6 0 Median 642020000 308480000 333540000 278490000 137660000 140830000 70486000 33081000 37405000 75558000 36133000 39425000 15253000 7093400 8159700 173660000 81843000 91818000 28571000 12672000 15899000 35149 868 36939 185050;185051;185052;185053;185054;185055;185056;185057;185058;185059;185060;185061;185062;185063;185064;185065;185066;185067;185068;185069;185070;185071;185072;185073;185074;185075 187737;187738;187739;187740;187741;187742;187743;187744;187745;187746;187747;187748;187749;187750;187751;187752;187753;187754;187755;187756;187757;187758;187759;187760;187761;187762;187763;187764;187765;187766;187767;187768;187769;187770;187771;187772;187773;187774;187775;187776;187777;187778 187742 42 VCADLIR IRITLTSRNVKSLEKVCADLIRGAKEKNLK RNVKSLEKVCADLIRGAKEKNLKVKGPVRM K V C I R G 1 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 845.44292 P60866;E5RJX2 P60866 35 41 RPS20 40S ribosomal protein S20 yes no 2 0.0081656 86.512 By MS/MS By MS/MS By matching 2 1 1 1.1618 0.95385 14.713 4 Median NaN NaN NaN 0 0 Median 1.0846 0.91385 10.08 2 0 Median 1.1867 1.2028 NaN 1 0 Median 1.1771 0.92711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109960000 48856000 61104000 0 0 0 98982000 44073000 54910000 8947600 3859500 5088100 2029200 923400 1105800 0 0 0 0 0 0 35150 2530 36940 185076;185077;185078;185079 187779;187780;187781;187782;187783 187782 5 VCEEIAIIPSK KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN TNKRVCEEIAIIPSKKLRNKIAGYVTHLMK R V C S K K 1 0 0 0 1 0 2 0 0 3 0 1 0 0 1 1 0 0 0 1 0 0 11 0 1257.6639 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73 H3BNC9 483 493 RPS17 40S ribosomal protein S17 yes no 2 0.0052833 46.39 By MS/MS By MS/MS 1 1 1.0686 0.9619 13.789 2 Median 1.1221 1.0604 NaN 1 0 Median 1.0177 0.87254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14329000 6553900 7775500 7525100 3194100 4331000 6804300 3359800 3444500 0 0 0 0 0 0 0 0 0 0 0 0 35151 1214 36941 185080;185081 187784;187785;187786 187784 3 VCEEIAIIPSKK KYYTRLGNDFHTNKRVCEEIAIIPSKKLRN NKRVCEEIAIIPSKKLRNKIAGYVTHLMKR R V C K K L 1 0 0 0 1 0 2 0 0 3 0 2 0 0 1 1 0 0 0 1 0 0 12 1 1385.7588 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73 H3BNC9 483 494 RPS17 40S ribosomal protein S17 yes no 2;3 0.00014594 79.693 By MS/MS By MS/MS 2 3 1.0656 0.94248 19.088 4 Median 0.9334 0.93206 NaN 1 0 Median 1.0707 0.94706 21.819 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34575000 16483000 18092000 10758000 5338100 5420000 23817000 11144000 12672000 0 0 0 0 0 0 0 0 0 0 0 0 35152 1214 36942 185082;185083;185084;185085;185086 187787;187788;187789;187790;187791;187792;187793 187791 7 VCENIPIVLCGNK VTYKNVPNWHRDLVRVCENIPIVLCGNKVD VRVCENIPIVLCGNKVDIKDRKVKAKSIVF R V C N K V 0 0 2 0 2 0 1 1 0 2 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1514.7585 B5MDF5;P62826;J3KQE5;F5H018;B4DV51 B5MDF5 128 140 RAN GTP-binding nuclear protein Ran yes no 2 0.027199 27.115 By MS/MS 2 0.84763 0.80227 13.388 2 Median NaN NaN NaN 0 0 Median 0.84763 0.80227 13.388 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9511700 4818200 4693500 0 0 0 9511700 4818200 4693500 0 0 0 0 0 0 0 0 0 0 0 0 35153 623 36943 185087;185088 187794 187794 1 VCHAHPTLSEAFR ALALEYGASCEDIARVCHAHPTLSEAFREA ARVCHAHPTLSEAFREANLAASFGKSINF_ R V C F R E 2 1 0 0 1 0 1 0 2 0 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1523.7303 E9PEX6;P09622 E9PEX6 460 472 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 3 0.00037791 54.524 By MS/MS 1 1.4346 1.2117 NaN 1 Median NaN NaN NaN 0 0 Median 1.4346 1.2117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6625200 2799400 3825800 0 0 0 6625200 2799400 3825800 0 0 0 0 0 0 0 0 0 0 0 0 35154 915 36944 185089 187795;187796 187795 2 VCLDIIYK DFVQVMRHRDDERQKVCLDIIYKMMPKLKP RDDERQKVCLDIIYKMMPKLKPVELRELLN K V C Y K M 0 0 0 1 1 0 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 8 0 1022.5471 P78527 P78527 2434 2441 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011309 57.177 By matching By MS/MS By matching 1 1 1 1.5879 1.4172 18.781 3 Median NaN NaN NaN 0 0 Median 1.5879 1.4172 NaN 1 0 Median 1.0034 1.0734 NaN 1 0 Median 1.652 1.5353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40310000 16259000 24052000 0 0 0 30348000 11358000 18991000 9340900 4663900 4677000 621200 237140 384050 0 0 0 0 0 0 35155 2647 36945 185090;185091;185092 187797 187797 1 VCMYFTYK NEVNFREIPSHVLSKVCMYFTYKVRYTNSS PSHVLSKVCMYFTYKVRYTNSSTEIPEFPI K V C Y K V 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 2 1 0 0 8 0 1110.4878 Q15369;E5RHG8 Q15369 73 80 TCEB1 Transcription elongation factor B polypeptide 1 yes no 2 0.022474 52.716 By MS/MS By matching 1 1 1.8174 1.512 19.392 2 Median NaN NaN NaN 0 0 Median 2.0899 1.7342 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5804 1.3182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3805600 1602100 2203500 0 0 0 3555500 1488600 2066900 0 0 0 250080 113490 136590 0 0 0 0 0 0 35156 846 36946 185093;185094 187798 187798 306 1 VCNYGLTFTQK TDTGKASGNLETKYKVCNYGLTFTQKWNTD TKYKVCNYGLTFTQKWNTDNTLGTEISWEN K V C Q K W 0 0 1 0 1 1 0 1 0 0 1 1 0 1 0 0 2 0 1 1 0 0 11 0 1329.6387 Q9Y277;E5RJN6;E5RHZ6;E5RFP6;E5RHE1;E5RK27 Q9Y277 64 74 VDAC3 Voltage-dependent anion-selective channel protein 3 yes no 2 0.047579 45.997 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35157 4377 36947 185095 187799 187799 1 VCNYVNWIQQTIAAN GYGCAQKNKPGVYTKVCNYVNWIQQTIAAN VCNYVNWIQQTIAAN_______________ K V C A N - 2 0 3 0 1 2 0 0 0 2 0 0 0 0 0 0 1 1 1 2 0 0 15 0 1792.8567 CON__P00761 CON__P00761 217 231 yes yes 2 0.053295 33.961 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1856400 0 0 0 0 0 1856400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 35158 737 36948 185096 187800 187800 1 VCTLAIIDPGDSDIIR GNNIELGTACGKYYRVCTLAIIDPGDSDII CTLAIIDPGDSDIIRSMPEQTGE_______ R V C I R S 1 1 0 3 1 0 0 1 0 4 1 0 0 0 1 1 1 0 0 1 0 0 16 0 1756.9029 E5RI99;P62888;A0A0C4DH44;A0A0B4J213 E5RI99 91 106 RPL30 60S ribosomal protein L30 yes no 2 0.00063854 48.004 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.0475 0.93095 58.257 7 Median 1.0767 1.0787 85.207 3 2 Median 1.2099 1.1882 41.416 2 0 Median 0.89 0.9005 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87126 0.93095 NaN 1 0 Median NaN NaN NaN 0 0 Median 28070000 14451000 13618000 7458200 4137700 3320500 2012000 870270 1141800 18041000 9215300 8825300 0 0 0 559110 228260 330850 0 0 0 35159 849 36949 185097;185098;185099;185100;185101;185102;185103 187801;187802;187803;187804;187805 187805 5 VCVEHHTFYR GFKLPNHRAAKRLWKVCVEHHTFYRLVSPE KRLWKVCVEHHTFYRLVSPEQPPKAKFLTL K V C Y R L 0 1 0 0 1 0 1 0 2 0 0 0 0 1 0 0 1 0 1 2 0 0 10 0 1346.619 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 487 496 EPB41L2 Band 4.1-like protein 2 yes no 3 0.0036777 39.873 By MS/MS 1 0.93076 0.7934 NaN 1 Median NaN NaN NaN 0 0 Median 0.93076 0.7934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3290900 1633300 1657500 0 0 0 3290900 1633300 1657500 0 0 0 0 0 0 0 0 0 0 0 0 35160 1573 36950 185104 187806 187806 1 VDAAELLR HGVPLPNWLINSYKKVDAAELLRLYLNYDL LINSYKKVDAAELLRLYLNYDLLEEAVDLV K V D L R L 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 885.49198 Q12769 Q12769 1332 1339 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.0059586 73.26 By matching By MS/MS By matching 4 1 1 0.97994 1.015 8.4539 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96855 1.0512 10.318 4 0 Median 1.1527 0.98291 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.149 0.94453 NaN 1 0 Median 17436000 8836200 8599700 0 0 0 0 0 0 15682000 8030500 7651300 1128300 515700 612620 0 0 0 625840 290070 335770 35161 2756 36951 185105;185106;185107;185108;185109;185110 187807;187808 187807 2 VDAEWWAETLRPYQSPFMDR QRYDPVWMTVTRKCRVDAEWWAETLRPYQS WAETLRPYQSPFMDREKKEDLEFQAKHMDQ R V D D R E 2 2 0 2 0 1 2 0 0 0 1 0 1 1 2 1 1 2 1 1 0 0 20 1 2496.1532 Q01831 Q01831 598 617 XPC DNA repair protein complementing XP-C cells yes yes 3 0.068685 7.9922 By MS/MS 1 0.64322 0.78229 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64322 0.78229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 816370 463720 352640 0 0 0 0 0 0 816370 463720 352640 0 0 0 0 0 0 0 0 0 35162 2693 36952 185111 187809 187809 1 VDALLSAQPK QLRVEEDVASDLVMKVDALLSAQPKGDPRI DLVMKVDALLSAQPKGDPRIEYQFFEDRHS K V D P K G 2 0 0 1 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1040.5866 Q9NYU2 Q9NYU2 950 959 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 0.00036469 82.287 By MS/MS By MS/MS By matching 1 1 1 1.0681 0.9854 16.421 3 Plateau 0.89929 0.86336 NaN 1 0 Median 1.2685 1.1247 NaN 1 0 Median 0.81077 0.83246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12873000 5947700 6925100 5415700 2694600 2721100 5668200 2353000 3315200 1788900 900080 888840 0 0 0 0 0 0 0 0 0 35163 4179 36953 185112;185113;185114 187810;187811;187812 187811 2 VDALMDEINFMK DVDAAYMNKVELEAKVDALMDEINFMKMFF EAKVDALMDEINFMKMFFDAELSQMQTHVS K V D M K M 1 0 1 2 0 0 1 0 0 1 1 1 2 1 0 0 0 0 0 1 0 0 12 0 1424.668 CON__P13647;P13647;H0YIN9 CON__P13647 293 304 KRT5 Keratin, type II cytoskeletal 5 no no 2 4.5882E-06 113.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1 0.24352 0.23457 127.69 10 Median 0.046712 0.04542 134 2 2 Median 0.3289 0.28927 73.464 2 2 Median 0.31695 0.3483 27.636 2 1 Median NaN NaN NaN 0 0 Median 0.61077 0.58287 187.7 3 3 Median 0.22959 0.19208 NaN 1 1 Median 38284000 31820000 6463600 13575000 13117000 458140 2843700 2070600 773150 3692000 2693200 998780 0 0 0 16872000 12865000 4006200 1301300 1074100 227270 + 35164 757 36954;36955 185115;185116;185117;185118;185119;185120;185121;185122;185123;185124 187813;187814;187815;187816;187817;187818;187819;187820;187821;187822 187818 282;283 10 VDALNDEIR GTDLLSQLSLEDQKRVDALNDEIRQLQQEN LEDQKRVDALNDEIRQLQQENRQLLNERIK R V D I R Q 1 1 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1043.5247 Q9UQE7 Q9UQE7 797 805 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00017666 143.01 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.2591 1.0448 10.436 7 Median 1.3135 1.2802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91265 1.0033 NaN 1 0 Median 1.2598 1.0705 NaN 1 0 Median 0.93399 0.94814 3.0163 2 0 Median 1.3047 1.0701 3.3943 2 0 Median 78675000 38309000 40366000 3027200 1283300 1743900 0 0 0 17229000 8721300 8508100 4148200 1611500 2536700 46444000 23450000 22994000 7826500 3243100 4583300 35165 4362 36956 185125;185126;185127;185128;185129;185130;185131 187823;187824;187825;187826;187827;187828;187829;187830;187831;187832;187833;187834 187828 12 VDAQFGGIDQR LLYPGLQALDEEYLKVDAQFGGIDQRKIFT EYLKVDAQFGGIDQRKIFTFAEKYLPALGY K V D Q R K 1 1 0 2 0 2 0 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1204.5836 P54577;A0A0C4DGZ5 P54577 179 189 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.00011201 123.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1434 1.0301 58.852 4 Median 1.118 1.0502 NaN 1 0 Median 1.1694 1.0104 NaN 1 0 Median 1.9257 1.9494 NaN 1 1 Median 0.55317 0.46346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83172000 38516000 44656000 47324000 22224000 25100000 22638000 10042000 12595000 8312300 3123200 5189100 4898000 3126400 1771600 0 0 0 0 0 0 35166 2482 36957 185132;185133;185134;185135 187835;187836;187837;187838;187839;187840 187835 6 VDATADYICK VVTKDGVYVLDLAAKVDATADYICKVKWGD DLAAKVDATADYICKVKWGDIEFPPPFGRE K V D C K V 2 0 0 2 1 0 0 0 0 1 0 1 0 0 0 0 1 0 1 1 0 0 10 0 1154.5278 P53396 P53396 221 230 ACLY ATP-citrate synthase yes yes 2 0.0010628 85.731 By MS/MS 2 1.5009 1.2702 NaN 1 Median NaN NaN NaN 0 0 Median 1.5009 1.2702 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11011000 4138400 6872600 0 0 0 11011000 4138400 6872600 0 0 0 0 0 0 0 0 0 0 0 0 35167 2467 36958 185136;185137 187841;187842 187842 2 VDATAETDLAK AKELSKRSPPIPLAKVDATAETDLAKRFDV PLAKVDATAETDLAKRFDVSGYPTLKIFRK K V D A K R 3 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1132.5612 P13667;A0A499FI48 P13667 235 245 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00014634 116.52 By MS/MS By MS/MS By MS/MS 3 2 1 1.052 0.98741 20.214 6 Median 0.92538 0.89022 29.088 3 1 Median 1.2044 1.0298 13.222 2 0 Median 1.0317 1.0395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64387000 29582000 34804000 20396000 10748000 9647300 29941000 12467000 17474000 14050000 6366900 7683300 0 0 0 0 0 0 0 0 0 35168 1993 36959 185138;185139;185140;185141;185142;185143 187843;187844;187845;187846 187846 4 VDATAETDLAKR AKELSKRSPPIPLAKVDATAETDLAKRFDV LAKVDATAETDLAKRFDVSGYPTLKIFRKG K V D K R F 3 1 0 2 0 0 1 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 12 1 1288.6623 P13667;A0A499FI48 P13667 235 246 PDIA4 Protein disulfide-isomerase A4 yes no 2;3 0.00196 53.683 By MS/MS By MS/MS 2 1 0.97982 1.0053 14.611 3 Median 1.026 1.0525 6.4859 2 0 Median NaN NaN NaN 0 0 Median 0.77819 0.82769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12608000 6567500 6040300 11134000 5714900 5418800 0 0 0 1474100 852560 621490 0 0 0 0 0 0 0 0 0 35169 1993 36960 185144;185145;185146 187847;187848;187849;187850 187848 4 VDATEESDLAQQYGVR AGKLKAEGSEIRLAKVDATEESDLAQQYGV DATEESDLAQQYGVRGYPTIKFFRNGDTAS K V D V R G 2 1 0 2 0 2 2 1 0 0 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1779.8275 P07237;H7BZ94;I3NI03;I3L3U6 P07237 82 97 P4HB Protein disulfide-isomerase yes no 2;3 3.0044E-72 241.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 3 2 2 1 1.2801 1.249 15.016 14 Median 1.1847 1.1393 11.465 6 0 Median 1.5652 1.3161 6.6959 3 0 Median 1.1108 1.1069 10.962 2 0 Median 1.5683 1.3572 3.2927 2 0 Median 1.5861 1.5963 NaN 1 1 Median NaN NaN NaN 0 0 Median 248520000 108430000 140090000 184760000 81012000 103750000 14374000 5324600 9049300 42916000 19522000 23393000 3192200 1189000 2003200 3276200 1382100 1894100 0 0 0 35170 1883 36961 185147;185148;185149;185150;185151;185152;185153;185154;185155;185156;185157;185158;185159;185160 187851;187852;187853;187854;187855;187856;187857;187858;187859;187860;187861;187862;187863;187864;187865;187866;187867;187868 187858 18 VDATRPEATTEVGPQIGVK AGGGPQGKKGKNEPKVDATRPEATTEVGPQ RPEATTEVGPQIGVKESSMEPKAAEEEAGS K V D V K E 2 1 0 1 0 1 2 2 0 1 0 1 0 0 2 0 3 0 0 3 0 0 19 1 1967.0324 Q96T58 Q96T58 2006 2024 SPEN Msx2-interacting protein yes yes 2;3 2.1177E-10 94.856 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 1 0.69517 0.78048 15.752 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62374 0.73504 8.0646 2 0 Median 0.8769 0.84463 10.753 2 0 Median 0.69232 0.78634 19.787 3 0 Median 0.69803 0.62006 NaN 1 0 Median 52127000 28590000 23537000 0 0 0 0 0 0 20937000 11349000 9587800 10387000 5449400 4937400 19535000 11139000 8396200 1267800 652710 615120 35171 3741 36962 185161;185162;185163;185164;185165;185166;185167;185168 187869;187870;187871;187872;187873;187874;187875;187876 187875 8 VDAVIPPYPR FSEDKYYRVNLRTRRVDAVIPPYPRSIAQY LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA R V D P R S 1 1 0 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 1 2 0 0 10 0 1125.6182 CON__Q3ZBS7 CON__Q3ZBS7 460 469 yes yes 2 0.0011775 86.833 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2122 1.1035 97.859 4 Median NaN NaN NaN 0 0 Median 0.43879 0.35491 NaN 1 1 Median 3.5934 3.6422 NaN 1 1 Median 1.8665 1.4657 NaN 1 1 Median 0.78731 0.83078 NaN 1 1 Median NaN NaN NaN 0 0 Median 38596000 21869000 16727000 0 0 0 2517700 1937900 579760 8920900 2959700 5961300 6789200 3558400 3230700 20368000 13413000 6954800 0 0 0 + 35172 783 36963 185169;185170;185171;185172 187877;187878;187879;187880 187878 4 VDDDSLGEFPVTNSR LRTDPLEKRGAPDPRVDDDSLGEFPVTNSR VDDDSLGEFPVTNSRARKRILEPDDFLDDL R V D S R A 0 1 1 3 0 0 1 1 0 0 1 0 0 1 1 2 1 0 0 2 0 0 15 0 1649.7533 Q92785;J3KMZ8 Q92785 138 152 DPF2 Zinc finger protein ubi-d4 yes no 2 3.3666E-10 164.9 By MS/MS By MS/MS 2 1 0.86281 0.92407 11.115 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82182 0.84679 14.008 2 0 Median 1.0629 0.92407 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28533000 15214000 13319000 0 0 0 0 0 0 25100000 13514000 11586000 3432700 1700200 1732500 0 0 0 0 0 0 35173 1299 36964 185173;185174;185175 187881;187882;187883;187884 187881 4 VDDEPMDVDKGPGSTK REEEKKRHSYFEKPKVDDEPMDVDKGPGST DDEPMDVDKGPGSTKELIKSINEKFAGSAG K V D T K E 0 0 0 4 0 0 1 2 0 0 0 2 1 0 2 1 1 0 0 2 0 0 16 1 1688.7563 Q13123;A0A0C4DGW5 Q13123 389 404 IK Protein Red yes no 2;3 5.2501E-06 92.19 By MS/MS By MS/MS 2 2 0.63397 0.6671 19.387 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73306 0.69622 30.074 2 1 Median 0.59574 0.6671 14.313 2 0 Median NaN NaN NaN 0 0 Median 23894000 13201000 10694000 0 0 0 0 0 0 0 0 0 4253100 2292700 1960400 19641000 10908000 8733300 0 0 0 35174 2787 36965 185176;185177;185178;185179 187885;187886;187887;187888;187889;187890;187891 187886 7 VDDESMQR QNEVTKERTAQCFLRVDDESMQRFHNRVRQ TAQCFLRVDDESMQRFHNRVRQILMASGST R V D Q R F 0 1 0 2 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 8 0 978.40766 Q6P2Q9 Q6P2Q9 1232 1239 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.022207 45.081 By MS/MS By matching By MS/MS 1 1 2 1.2021 1.1335 14.014 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89697 0.99911 NaN 1 0 Median 1.2744 1.1037 NaN 1 0 Median 1.2327 1.2746 12.816 2 0 Median NaN NaN NaN 0 0 Median 1886500 920460 966070 0 0 0 0 0 0 862800 454250 408550 152490 60390 92101 871240 405820 465420 0 0 0 35175 3157 36966 185180;185181;185182;185183 187892;187893 187893 2 VDDFLANEAK DHGFVVCAFNRTVSKVDDFLANEAKGTKVV RTVSKVDDFLANEAKGTKVVGAQSLKEMVS K V D A K G 2 0 1 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1120.5401 P52209;K7EMN2;K7EM49;K7EPF6 P52209 39 48 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.00034968 84.213 By MS/MS By MS/MS By MS/MS 1 2 2 1.0085 0.97991 73.165 5 Median 1.1232 1.0356 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6264 2.1064 108.23 2 0 Median 0.88134 0.80504 5.2739 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41232000 18181000 23051000 26276000 11229000 15047000 0 0 0 9150200 4405800 4744400 5805100 2546200 3258900 0 0 0 0 0 0 35176 2447 36967 185184;185185;185186;185187;185188 187894;187895;187896;187897;187898 187895 5 VDDLLESYMGIR VEDLPSAFEEKAIEKVDDLLESYMGIRDTE IEKVDDLLESYMGIRDTELAATMVELGKDK K V D I R D 0 1 0 2 0 0 1 1 0 1 2 0 1 0 0 1 0 0 1 1 0 0 12 0 1409.6861 O14908;K7EM11;A0A2R8Y651;Q8TF64 O14908 268 279 GIPC1;GIPC3 PDZ domain-containing protein GIPC1;PDZ domain-containing protein GIPC3 yes no 2 0.0041475 44.309 By MS/MS 2 0.4918 0.50128 52.918 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4918 0.50128 52.918 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3145000 2317100 827910 0 0 0 0 0 0 3145000 2317100 827910 0 0 0 0 0 0 0 0 0 35177 1502 36968 185189;185190 187899 187899 1 VDDLLIIEEK YVQRLAETVFNFQEKVDDLLIIEEKIDLEV NFQEKVDDLLIIEEKIDLEVRSLETCMYDH K V D E K I 0 0 0 2 0 0 2 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1185.6493 Q14204 Q14204 847 856 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0012684 80.755 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35178 2865 36969 185191 187900 187900 1 VDDNEETIK TMTQRLLKRGETSGRVDDNEETIKKRLETY GETSGRVDDNEETIKKRLETYYKATEPVIA R V D I K K 0 0 1 2 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 9 0 1061.4877 Q5T9B7;P00568 Q5T9B7 155 163 AK1 Adenylate kinase isoenzyme 1 yes no 2 0.039605 33.797 By matching By MS/MS By matching By matching 1 1 1 1 1.1479 1.0467 16.112 4 Median 1.0436 1.0131 NaN 1 0 Median 1.2626 1.0813 NaN 1 0 Median 1.3335 1.2149 NaN 1 0 Median 0.91896 0.82717 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2199600 1067000 1132600 1071100 566510 504580 479250 196770 282480 300350 120790 179560 348860 182900 165960 0 0 0 0 0 0 35179 1825 36970 185192;185193;185194;185195 187901 187901 1 VDDQIAIVFK FAAFLCCLCKIGVLRVDDQIAIVFKVFNRY IGVLRVDDQIAIVFKVFNRYLEVMRKLQKT R V D F K V 1 0 0 2 0 1 0 0 0 2 0 1 0 1 0 0 0 0 0 2 0 0 10 0 1146.6285 A6PVN5;Q15257;F6WIT2;Q5T949;Q5T948;A6PVN9 A6PVN5 180 189 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 2 0.010957 43.246 By MS/MS By matching 1 2 1.1903 1.0162 4.2624 3 Median 1.0478 0.97864 NaN 1 0 Median 1.2234 1.0406 3.3504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8088500 3157300 4931200 5735800 2380900 3354900 2352700 776380 1576300 0 0 0 0 0 0 0 0 0 0 0 0 35180 533 36971 185196;185197;185198 187902;187903 187903 2 VDDQIYSEFRK KLISSVDPQFLKLTKVDDQIYSEFRKNFET KLTKVDDQIYSEFRKNFETLRIDVLDPEEL K V D R K N 0 1 0 2 0 1 1 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 11 1 1398.6779 Q9BVG4;A6NDF3 Q9BVG4 67 77 PBDC1 Protein PBDC1 yes no 3 0.0075693 30.889 By MS/MS By MS/MS 1 1 0.86035 0.79052 13.435 2 Median NaN NaN NaN 0 0 Median 0.80356 0.71887 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92115 0.8693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9240300 4414500 4825800 0 0 0 6975400 3411500 3563800 0 0 0 2264900 1003000 1261900 0 0 0 0 0 0 35181 3852 36972 185199;185200 187904;187905;187906 187905 3 VDDSSEDKTEFTVK AEQGGQIYDEGYLVKVDDSSEDKTEFTVKN KVDDSSEDKTEFTVKNAQVRGGYVLHIGTI K V D V K N 0 0 0 3 0 0 2 0 0 0 0 2 0 1 0 2 2 0 0 2 0 0 14 1 1598.7312 P49588 P49588 551 564 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2;3 1.0766E-10 174.72 By MS/MS By MS/MS 1 3 1.4695 1.2516 5.7392 3 Plateau 1.1974 1.2516 NaN 1 1 Median 1.3864 1.2833 7.8547 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50135000 22287000 27847000 16424000 7465400 8958900 33710000 14822000 18888000 0 0 0 0 0 0 0 0 0 0 0 0 35182 2385 36973 185201;185202;185203;185204 187907;187908;187909;187910;187911 187907 5 VDDSSGSIGR KELSEALTRHGVSHKVDDSSGSIGRRYART GVSHKVDDSSGSIGRRYARTDEIGVAFGVT K V D G R R 0 1 0 2 0 0 0 2 0 1 0 0 0 0 0 3 0 0 0 1 0 0 10 0 991.45705 P41250 P41250 647 656 GARS Glycine--tRNA ligase yes yes 2 0.006956 48.423 By matching By MS/MS 1 1 0.99376 0.94255 7.1435 2 Median 0.99142 0.99139 NaN 1 0 Median 0.99609 0.89613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1425300 664700 760600 418910 193630 225280 1006400 471070 535330 0 0 0 0 0 0 0 0 0 0 0 0 35183 2301 36974 185205;185206 187912;187913 187913 2 VDDYSQEWAAQTEK PDIYFASVSETFETKVDDYSQEWAAQTEKS KVDDYSQEWAAQTEKSYEKSELSLDRLRTL K V D E K S 2 0 0 2 0 2 2 0 0 0 0 1 0 0 0 1 1 1 1 1 0 0 14 0 1668.7267 O95602;B9ZVN9 O95602 1167 1180 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 3.1746E-05 134.75 By MS/MS By MS/MS 1 1 1.0524 1.0544 9.2752 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89483 0.98747 NaN 1 0 Median 1.2377 1.1259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12691000 6797900 5893300 0 0 0 0 0 0 11821000 6347300 5473800 870110 450580 419530 0 0 0 0 0 0 35184 1781 36975 185207;185208 187914;187915 187914 2 VDEAVAVLQAHHAK ELLHMLESPESLRSKVDEAVAVLQAHHAKK KVDEAVAVLQAHHAKKEAAQKVGAVAAATS K V D A K K 4 0 0 1 0 1 1 0 2 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1486.7892 B1ANR0;Q13310;H0YER0;H0Y5F5;H0Y6X6 B1ANR0 587 600 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 3 0.029428 25.322 By MS/MS By matching By MS/MS 1 1 1 3.8696 3.2347 50.081 3 Plateau 1.3484 1.3116 NaN 1 1 Median 3.9992 3.3973 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.857 1.6107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10041000 3497200 6544000 2921100 1390300 1530800 4816200 1179000 3637100 0 0 0 2303900 927890 1376000 0 0 0 0 0 0 35185 576;1151 36976 185209;185210;185211 187916;187917 187917 2 VDEAVAVLQAHQAK ELLHMLESPESLRSKVDEAVAVLQAHQAKE KVDEAVAVLQAHQAKEAAQKAVNSATGVPT K V D A K E 4 0 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1477.7889 P11940;E7EQV3;E7ERJ7;A0A087WTT1;Q9H361;H0YB75;H0YAS6;H0YAS7;H0YC10 P11940 607 620 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 yes no 2;3 0.0002615 75.294 By MS/MS By MS/MS 1 1 1.0812 0.98199 24.857 2 Median 1.2153 1.1707 NaN 1 1 Median 0.96197 0.82371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6407700 2984300 3423400 2687300 1108900 1578400 3720400 1875400 1845000 0 0 0 0 0 0 0 0 0 0 0 0 35186 1973 36977 185212;185213 187918;187919;187920 187919 3 VDEEPTTLPSGEAKPR ADELAARIKGDAVGRVDEEPTTLPSGEAKP DEEPTTLPSGEAKPRKTLKEKKERRTPSDD R V D P R K 1 1 0 1 0 0 3 1 0 0 1 1 0 0 3 1 2 0 0 1 0 0 16 1 1724.8581 F8W7U3;J3KP36;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1;Q641Q2;A0A0A0MT65 F8W7U3 217 232 FAM21A;FAM21C WASH complex subunit FAM21C;WASH complex subunit FAM21A yes no 3 0.00060289 37.77 By MS/MS 1 0.85851 0.8223 NaN 1 Median NaN NaN NaN 0 0 Median 0.85851 0.8223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1236500 701530 534930 0 0 0 1236500 701530 534930 0 0 0 0 0 0 0 0 0 0 0 0 35187 143 36978 185214 187921;187922 187921 2 VDEEQMK IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF SDIVPFSKVDEEQMKYKSEGKCFSVLGFCK K V D M K Y 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 7 0 877.38513 P13010 P13010 326 332 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0096554 83.614 By matching By matching By MS/MS By matching 1 1 1 1 1.2174 1.1458 9.6376 4 Median 1.1749 1.1756 NaN 1 0 Median 1.3907 1.2571 NaN 1 0 Median 0.94118 1.0004 NaN 1 0 Median 1.2615 1.1168 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3674500 1792900 1881600 221880 98774 123100 402700 152170 250530 2768800 1411900 1356900 281180 130050 151130 0 0 0 0 0 0 35188 1986 36979 185215;185216;185217;185218 187923;187924;187925 187924 3 VDEFNVSSPQFVGNLR HPRIIMLTCAFLACKVDEFNVSSPQFVGNL DEFNVSSPQFVGNLRESPLGQEKALEQILE K V D L R E 0 1 2 1 0 1 1 1 0 0 1 0 0 2 1 2 0 0 0 3 0 0 16 0 1806.8901 D6RHI7;D6RG18;A0A2R8YEM2;P51946 D6RHI7 41 56 CCNH Cyclin-H yes no 2 2.9511E-06 86.313 By matching By MS/MS 1 1 1.0289 1.0082 35.638 2 Median 1.3366 1.2972 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79209 0.78363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5665700 3058200 2607600 1373900 649370 724510 0 0 0 4291800 2408800 1883100 0 0 0 0 0 0 0 0 0 35189 400 36980 185219;185220 187926 187926 1 VDEFVTHNLSFDEINK SVPKLVSEYMSKKIKVDEFVTHNLSFDEIN DEFVTHNLSFDEINKAFELMHSGKSIRTVV K V D N K A 0 0 2 2 0 0 2 0 1 1 1 1 0 2 0 1 1 0 0 2 0 0 16 0 1905.9109 P11766 P11766 342 357 ADH5 Alcohol dehydrogenase class-3 yes yes 2;3 1.6246E-09 141.38 By MS/MS By matching 3 4 1.2617 1.1149 10.974 7 Median 1.1114 1.1136 0.57762 3 0 Plateau 1.4293 1.2381 12.178 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41776000 19712000 22064000 34349000 16613000 17736000 7427000 3098300 4328700 0 0 0 0 0 0 0 0 0 0 0 0 35190 1970 36981 185221;185222;185223;185224;185225;185226;185227 187927;187928;187929;187930;187931;187932 187929 6 VDEGGWNTVQGAK QQLMTKEKRRPGVQRVDEGGWNTVQGAKNS QRVDEGGWNTVQGAKNSRVLDPSKFLKITK R V D A K N 1 0 1 1 0 1 1 3 0 0 0 1 0 0 0 0 1 1 0 2 0 0 13 0 1359.6419 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1219 1231 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.00031274 77.379 By MS/MS By matching By matching 1 1 1 69.9 59.072 229.33 3 Plateau 1.6096 1.55 NaN 1 0 Median 0.84885 0.95314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73.722 63.109 NaN 1 0 Median 40238000 2715600 37522000 3776800 1430200 2346600 1950700 1041700 909000 0 0 0 0 0 0 0 0 0 34510000 243630 34266000 35191 300 36982 185228;185229;185230 187933 187933 1 VDEHLAKQDAQILYKAGENR ALLTLADGRRDESLKVDEHLAKQDAQILYK AKQDAQILYKAGENRWGTDEDKFTEILCLR K V D N R W 3 1 1 2 0 2 2 1 1 1 2 2 0 0 0 0 0 0 1 1 0 0 20 2 2297.1764 P12429;D6RA82;D6RFJ9 P12429 170 189 ANXA3 Annexin A3;Annexin yes no 4 0.064014 15.422 By MS/MS 1 0.93631 1.0786 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93631 1.0786 NaN 1 0 Median NaN NaN NaN 0 0 Median 1424200 910150 514080 0 0 0 0 0 0 0 0 0 0 0 0 1424200 910150 514080 0 0 0 35192 1981 36983 185231 187934 187934 0 VDEIDAAIQR ANEQYKLVSDTIGQRVDEIDAAIQRSQQYE TIGQRVDEIDAAIQRSQQYEQAADAELAWV R V D Q R S 2 1 0 2 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1128.5775 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 5767 5776 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 3.7893E-05 140.5 By MS/MS By MS/MS By MS/MS 1 1 1 1.2296 0.99154 11.454 3 Plateau 0.88539 0.8831 NaN 1 0 Median 1.2296 0.99154 NaN 1 0 Median 0.74618 0.78854 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28180000 14948000 13232000 6041300 3604100 2437200 13118000 6094000 7024300 9020600 5250400 3770200 0 0 0 0 0 0 0 0 0 35193 1220 36984 185232;185233;185234 187935;187936;187937 187935 3 VDEIFGQLR FNAPVYLENKEQIGKVDEIFGQLRDFYFSV KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K V D L R D 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1075.5662 Q9NY12 Q9NY12 113 121 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.00081745 96.253 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.3754 1.1835 26.993 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.02 0.97926 NaN 1 0 Median 1.5077 1.2471 NaN 1 0 Median 1.097 1.1234 7.3714 2 0 Median 1.5532 1.3552 35.706 3 0 Median 75361000 35800000 39561000 0 0 0 0 0 0 50840000 25446000 25394000 1575400 637480 937960 18134000 7803700 10330000 4812100 1913000 2899100 35194 4171 36985 185235;185236;185237;185238;185239;185240;185241 187938;187939;187940;187941 187939 4 VDEIVVLSGDNSK ALPQIAAKIAAPLTKVDEIVVLSGDNSKVT TKVDEIVVLSGDNSKVTSEVNRLLAELPAS K V D S K V 0 0 1 2 0 0 1 1 0 1 1 1 0 0 0 2 0 0 0 3 0 0 13 0 1373.7038 J3QLD9;E7EMK3;Q14254 J3QLD9 378 390 FLOT2 Flotillin-2 yes no 2 0.0052394 57.836 By MS/MS 1 0.71406 0.67883 NaN 1 Median 0.71406 0.67883 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811900 2109000 1702900 3811900 2109000 1702900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35195 856 36986 185242 187942 187942 1 VDELSLYSVPEGQSK YAAPKKDSPPKNSVKVDELSLYSVPEGQSK VDELSLYSVPEGQSKYVEEARSQLEESISQ K V D S K Y 0 0 0 1 0 1 2 1 0 0 2 1 0 0 1 3 0 0 1 2 0 0 15 0 1649.8148 H7C1U8;Q9BUR5;G3V1B6 H7C1U8 17 31 APOO Apolipoprotein O yes no 2 1.4347E-09 105.17 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.048 0.94545 19.862 4 Median 0.82222 0.77116 NaN 1 0 Median 1.3023 1.1171 NaN 1 0 Median 1.1214 1.1063 NaN 1 0 Median 0.97946 0.80801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78256000 39929000 38327000 69137000 35725000 33412000 5789800 2468000 3321700 2596600 1322000 1274600 733320 414100 319220 0 0 0 0 0 0 35196 1261 36987 185243;185244;185245;185246 187943;187944;187945;187946;187947;187948;187949;187950 187946 8 VDELTCEKDVLQGELEAVK TKNALNIVKNDLIAKVDELTCEKDVLQGEL TCEKDVLQGELEAVKQAKLKLEEKNRELEE K V D V K Q 1 0 0 2 1 1 4 1 0 0 3 2 0 0 0 0 1 0 0 3 0 0 19 1 2174.0777 A0A087X2D8;O60271;H0YBE9 A0A087X2D8 424 442 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 3 1.3944E-05 48.112 By MS/MS 1 1.2588 1.1974 NaN 1 Median NaN NaN NaN 0 0 Median 1.2588 1.1974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2897200 1256300 1640900 0 0 0 2897200 1256300 1640900 0 0 0 0 0 0 0 0 0 0 0 0 35197 134 36988 185247 187951 187951 1 VDELTTDLEILK RAESLQQEVEALKERVDELTTDLEILKAEI KERVDELTTDLEILKAEIEEKGSDGAASSY R V D L K A 0 0 0 2 0 0 2 0 0 1 3 1 0 0 0 0 2 0 0 1 0 0 12 0 1387.7446 E7EX90;Q14203;Q6AWB1 E7EX90 315 326 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 4.28E-06 104.52 By MS/MS 2 1.3405 1.1718 17.341 2 Median NaN NaN NaN 0 0 Median 1.3405 1.1718 17.341 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6745300 3049000 3696300 0 0 0 6745300 3049000 3696300 0 0 0 0 0 0 0 0 0 0 0 0 35198 906 36989 185248;185249 187952 187952 1 VDEMSQDIVK SSNHLGKNLQLLMDRVDEMSQDIVKYNTYM LLMDRVDEMSQDIVKYNTYMRNTSKQQQQK R V D V K Y 0 0 0 2 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 2 0 0 10 0 1162.554 B3KS98;O15372;A0A087WZK9;E5RJT0 B3KS98 264 273 EIF3H Eukaryotic translation initiation factor 3 subunit H yes no 2 0.0026978 72.643 By MS/MS 1 1.3328 1.1359 NaN 1 Median NaN NaN NaN 0 0 Median 1.3328 1.1359 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12359000 4406800 7951900 0 0 0 12359000 4406800 7951900 0 0 0 0 0 0 0 0 0 0 0 0 35199 584 36990 185250 187953 187953 1 VDENHSEFTLYESR DMMRRAARALLALAKVDENHSEFTLYESRL KVDENHSEFTLYESRLLDISVSPLMNSLVS K V D S R L 0 1 1 1 0 0 3 0 1 0 1 0 0 1 0 2 1 0 1 1 0 0 14 0 1724.7642 O14497;H0Y488;A0A1B0GTU5 O14497 2244 2257 ARID1A AT-rich interactive domain-containing protein 1A yes no 2;3 1.9297E-08 101.2 By MS/MS By MS/MS 5 4 1.1928 1.1024 21.193 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1354 1.2197 15.794 5 0 Median 1.2622 1.0926 27.842 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55731000 28791000 26940000 0 0 0 0 0 0 47895000 25485000 22409000 7836300 3305900 4530400 0 0 0 0 0 0 35200 1480 36991 185251;185252;185253;185254;185255;185256;185257;185258;185259 187954;187955;187956;187957;187958;187959;187960;187961;187962 187955 9 VDENNPEYLR PPPTTAPHKERYFDRVDENNPEYLRERNMA RYFDRVDENNPEYLRERNMAPDLRQDFNMM R V D L R E 0 1 2 1 0 0 2 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 10 0 1247.5782 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25;D6RJE2;D6RAH3 E7EV99 28 37 ADD1 Alpha-adducin yes no 2 0.00061928 94.85 By MS/MS By MS/MS 1 2 0.97275 0.93414 4.6993 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90233 0.9657 NaN 1 1 Median 1.0487 0.90361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4544400 1967200 2577100 0 0 0 0 0 0 2402300 1227300 1175000 2142100 739930 1402100 0 0 0 0 0 0 35201 866 36992 185260;185261;185262 187963;187964;187965 187964 3 VDEVGGEALGR AEEKAAVTSLFAKVKVDEVGGEALGRLLVV AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V D G R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1100.5462 CON__Q3SX09;CON__P02070 CON__Q3SX09 75 85 yes no 2 0.0076573 60.518 By MS/MS By MS/MS 1 1 0.33139 0.30669 125.6 2 Median NaN NaN NaN 0 0 Median 0.88099 0.74545 NaN 1 0 Median 0.12466 0.12618 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4568400 3837000 731350 0 0 0 1643200 1199800 443390 2925100 2637200 287960 0 0 0 0 0 0 0 0 0 + 35202 777 36993 185263;185264 187966;187967 187966 1 VDEVPDGAVKPPTNK LIFAKMKGYPHWPARVDEVPDGAVKPPTNK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG R V D N K L 1 0 1 2 0 0 1 1 0 0 0 2 0 0 3 0 1 0 0 3 0 0 15 1 1564.8097 O75475 O75475 25 39 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 8.1215E-10 119.32 By MS/MS By MS/MS By MS/MS 5 9 1 0.66373 0.6311 35.361 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56914 0.59015 11.025 5 0 Median 0.72424 0.71462 25.793 9 1 Median 0.20164 0.22582 NaN 1 1 Median NaN NaN NaN 0 0 Median 185370000 113150000 72220000 0 0 0 0 0 0 124600000 79489000 45112000 52147000 27392000 24756000 8617800 6265800 2352100 0 0 0 35203 1674 36994 185265;185266;185267;185268;185269;185270;185271;185272;185273;185274;185275;185276;185277;185278;185279 187968;187969;187970;187971;187972;187973;187974;187975;187976;187977;187978;187979;187980;187981;187982;187983;187984;187985;187986;187987;187988;187989;187990;187991;187992;187993;187994 187974 27 VDFNVPMK TLDKLDVKGKRVVMRVDFNVPMKNNQITNN GKRVVMRVDFNVPMKNNQITNNQRIKAAVP R V D M K N 0 0 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 2 0 0 8 0 948.47389 P00558;P07205 P00558 23 30 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2 0.0035902 86.953 By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1.0334 0.94487 9.9904 10 Median 1.0494 0.89734 7.8214 4 0 Linear 1.2369 1.0541 8.2374 3 1 Median 0.94189 0.93424 9.6465 2 0 Median 1.2392 1.0379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 196200000 93416000 102790000 161820000 77758000 84063000 22222000 9858600 12363000 11673000 5602700 6070700 484730 196480 288250 0 0 0 0 0 0 35204 1824 36995 185280;185281;185282;185283;185284;185285;185286;185287;185288;185289 187995;187996;187997;187998;187999;188000;188001;188002;188003;188004;188005;188006;188007 188000 13 VDFNVPMKNNQITNNQR TLDKLDVKGKRVVMRVDFNVPMKNNQITNN FNVPMKNNQITNNQRIKAAVPSIKFCLDNG R V D Q R I 0 1 5 1 0 2 0 0 0 1 0 1 1 1 1 0 1 0 0 2 0 0 17 1 2030.9956 P00558 P00558 23 39 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 4.8338E-14 114.01 By MS/MS By matching 4 1 0.90873 0.97374 18.937 5 Median 1.0101 1.082 12.248 4 1 Median 0.70226 0.76169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55843000 25388000 30455000 50317000 23070000 27247000 5525800 2317800 3207900 0 0 0 0 0 0 0 0 0 0 0 0 35205 1824 36996;36997 185290;185291;185292;185293;185294 188008;188009;188010;188011;188012;188013 188010 593 6 VDFPQDQLTALTGR AGKTIIPLISQCTPKVDFPQDQLTALTGRI KVDFPQDQLTALTGRIQEAGTEVVKAKAGA K V D G R I 1 1 0 2 0 2 0 1 0 0 2 0 0 1 1 0 2 0 0 1 0 0 14 0 1559.7944 P40926;G3XAL0 P40926 216 229 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 1.664E-10 114.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 6 9 3 1.2693 1.0626 32.739 12 Median 1.0222 0.95961 3.7973 2 1 Median 1.3364 1.1125 46.728 6 2 Median 0.81852 0.80471 6.9122 2 2 Median 1.2693 1.0626 0.78876 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138080000 56069000 82013000 44825000 18899000 25926000 76457000 29872000 46586000 14474000 6374400 8099300 2326000 924320 1401700 0 0 0 0 0 0 35206 2292 36998 185295;185296;185297;185298;185299;185300;185301;185302;185303;185304;185305;185306;185307;185308;185309;185310;185311;185312;185313;185314 188014;188015;188016;188017;188018;188019;188020;188021;188022;188023;188024;188025;188026;188027;188028;188029;188030;188031;188032;188033;188034;188035;188036;188037;188038;188039;188040;188041;188042;188043;188044 188028 31 VDFPSSVR ALHDILTEIHLFVHRVDFPSSVRIHLLTKM IHLFVHRVDFPSSVRIHLLTKMADIEYRLS R V D V R I 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 8 0 905.46068 P40937 P40937 291 298 RFC5 Replication factor C subunit 5 yes yes 2 0.01208 55.676 By matching By matching By MS/MS 1 1 1 1.0829 0.91382 10.414 3 Median NaN NaN NaN 0 0 Median 1.0829 0.91382 NaN 1 0 Median 0.89548 0.88499 NaN 1 0 Median 1.227 1.0747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9848700 5166200 4682500 0 0 0 1750000 864240 885770 6114400 3402500 2711900 1984300 899500 1084800 0 0 0 0 0 0 35207 2293 36999 185315;185316;185317 188045;188046 188045 2 VDFPTAIGMVVER SYTVRAGYAGEDCPKVDFPTAIGMVVERDD PKVDFPTAIGMVVERDDGSTLMEIDGDKGK K V D E R D 1 1 0 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 0 3 0 0 13 0 1432.7384 O96019;H7C5S0 O96019 35 47 ACTL6A Actin-like protein 6A yes no 2 8.0279E-06 122.51 By matching By matching By MS/MS By matching By matching 1 1 2 1 2 0.88091 0.88295 41.594 7 Median 1.3385 1.3229 NaN 1 0 Median 1.1429 0.97963 NaN 1 0 Median 0.81652 0.842 6.7154 2 0 Median 1.0708 0.93174 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59214 0.5002 51.963 2 0 Median 28908000 15400000 13508000 1225600 561220 664340 1237400 596120 641330 23119000 12403000 10716000 2384400 1145600 1238800 0 0 0 941270 694230 247050 35208 1809 37000 185318;185319;185320;185321;185322;185323;185324 188047;188048;188049;188050;188051 188049 5 VDFSITK KERANGMELDGRRIRVDFSITKRPHTPTPG ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R V D T K R 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 7 0 808.43307 P62995;H7BXF3;H7C2L4 P62995 191 197 TRA2B Transformer-2 protein homolog beta yes no 2 0.027893 51.335 By MS/MS By MS/MS By MS/MS By matching 2 1 3 3 1.195 1.0561 9.9475 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0792 1.0961 9.424 2 0 Median 1.2215 1.0301 NaN 1 0 Median 1.1067 1.2836 11.75 3 0 Median 1.2732 1.0483 4.7063 3 0 Median 34320000 16249000 18071000 0 0 0 0 0 0 5721300 2800000 2921300 1083300 522720 560560 21407000 10193000 11213000 6108900 2732400 3376400 35209 2614 37001 185325;185326;185327;185328;185329;185330;185331;185332;185333 188052;188053;188054;188055 188053 4 VDFSPQPPYNYAVTASSR YKTPVQIKEFGAVSKVDFSPQPPYNYAVTA SPQPPYNYAVTASSRIHIYGRYSQEPIKTF K V D S R I 2 1 1 1 0 1 0 0 0 0 0 0 0 1 3 3 1 0 2 2 0 0 18 0 1997.9483 Q8TED0;H0Y8P4;D6RF65 Q8TED0 44 61 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes no 2 0.0038021 29.328 By MS/MS 1 0.73336 0.73655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73336 0.73655 NaN 1 0 Median NaN NaN NaN 0 0 Median 3764600 2016800 1747800 0 0 0 0 0 0 0 0 0 0 0 0 3764600 2016800 1747800 0 0 0 35210 1163 37002 185334 188056;188057 188056 2 VDFTEEEINNMK FKLGLAPQIQDLYGKVDFTEEEINNMKTEL YGKVDFTEEEINNMKTELEKYGIQMPAFSK K V D M K T 0 0 2 1 0 0 3 0 0 1 0 1 1 1 0 0 1 0 0 1 0 0 12 0 1467.6552 P46940;A0A0J9YXZ5;H0YKA5 P46940 175 186 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 4.1013E-06 134.25 By MS/MS By MS/MS 1 3 1.0847 1.0002 6.1145 4 Median 1.0842 1.0394 NaN 1 0 Median 1.0851 0.96241 7.1496 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51443000 23574000 27869000 32908000 15012000 17896000 18535000 8561200 9973500 0 0 0 0 0 0 0 0 0 0 0 0 35211 2350 37003 185335;185336;185337;185338 188058;188059;188060 188058 3 VDFTEEEINNMKTELEK FKLGLAPQIQDLYGKVDFTEEEINNMKTEL FTEEEINNMKTELEKYGIQMPAFSKIGGIL K V D E K Y 0 0 2 1 0 0 5 0 0 1 1 2 1 1 0 0 2 0 0 1 0 0 17 1 2067.9671 P46940;A0A0J9YXZ5 P46940 175 191 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3 0.0092581 24.041 By MS/MS 1 1.0394 1.0203 NaN 1 Median 1.0394 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5770400 3014300 2756100 5770400 3014300 2756100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35212 2350 37004 185339 188061 188061 1 VDGAEWGVDLPSVEAQLGSHR YLQDLLAWVEENQHRVDGAEWGVDLPSVEA GVDLPSVEAQLGSHRGLHQSIEEFRAKIER R V D H R G 2 1 0 2 0 1 2 3 1 0 2 0 0 0 1 2 0 1 0 3 0 0 21 0 2221.0764 Q15149;H0YDN1;E9PMV1 Q15149 676 696 PLEC Plectin yes no 3 3.3624E-09 57.989 By MS/MS By MS/MS 1 1 0.88628 0.79762 3.937 2 Median 0.77826 0.77572 NaN 1 1 Median 1.0093 0.82013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16429000 7789500 8639100 6160900 3549400 2611500 10268000 4240100 6027500 0 0 0 0 0 0 0 0 0 0 0 0 35213 2933 37005 185340;185341 188062;188063 188063 2 VDGEKDTYSYLA KKCIDILIEKEYLERVDGEKDTYSYLA___ LERVDGEKDTYSYLA_______________ R V D L A - 1 0 0 2 0 0 1 1 0 0 1 1 0 0 0 1 1 0 2 1 0 0 12 1 1359.6194 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJC4 A0A0C4DGX4 741 752 CUL1 Cullin-1 yes no 2 0.0021001 78.556 By MS/MS By matching By MS/MS 1 1 2 0.97864 0.96196 21.166 4 Median 0.89609 0.83986 NaN 1 0 Median 0.98041 0.86802 NaN 1 0 Median 1.1049 1.1894 15.484 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20268000 8755000 11513000 5306200 2921700 2384500 1929400 1020900 908420 13033000 4812300 8220200 0 0 0 0 0 0 0 0 0 35214 256 37006 185342;185343;185344;185345 188064;188065 188065 2 VDGIAWSPETR GIQYKTLRTFHHGVRVDGIAWSPETRLDSL HGVRVDGIAWSPETRLDSLPPVIKFCTSAA R V D T R L 1 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 1 1 0 1 0 0 11 0 1229.6041 Q8NFH4;F8VTY2 Q8NFH4 75 85 NUP37 Nucleoporin Nup37 yes no 2 0.00094301 71.451 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 0.85666 0.92262 55.813 5 Median NaN NaN NaN 0 0 Median 0.54856 0.5381 97.068 2 0 Median 0.72346 0.7347 NaN 1 0 Median 1.1067 0.9428 NaN 1 0 Median 0.85666 0.92262 NaN 1 0 Median NaN NaN NaN 0 0 Median 12996000 6340500 6655400 0 0 0 3758400 1936800 1821500 1271200 701620 569560 5750000 2628700 3121300 2216400 1073400 1143000 0 0 0 35215 3436 37007 185346;185347;185348;185349;185350;185351;185352 188066;188067;188068;188069;188070;188071;188072 188072 7 VDGSVNAYAINVSQK KLMGFASFDSTKGKKVDGSVNAYAINVSQK VDGSVNAYAINVSQKRKYRQYMNRKGGFNR K V D Q K R 2 0 2 1 0 1 0 1 0 1 0 1 0 0 0 2 0 0 1 3 0 0 15 0 1563.7893 Q8WVK2 Q8WVK2 120 134 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 2 5.7814E-05 83.182 By matching By MS/MS By MS/MS 1 1 1 1.1631 1.0902 16.798 3 Median 0.89188 0.83134 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1631 1.0902 NaN 1 0 Median 1.3643 1.1305 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23017000 11144000 11873000 4382500 2163900 2218600 0 0 0 14645000 7548000 7097300 3989400 1432400 2557000 0 0 0 0 0 0 35216 3502 37008 185353;185354;185355 188073;188074;188075 188073 3 VDHDTIIDATK KRYVQEGIGSSYLFRVDHDTIIDATKCGNL YLFRVDHDTIIDATKCGNLARFINHCCTPN R V D T K C 1 0 0 3 0 0 0 0 1 2 0 1 0 0 0 0 2 0 0 1 0 0 11 0 1226.6143 O15047;A0A0A0MQV9;Q9UPS6 O15047 1627 1637 SETD1A;SETD1B Histone-lysine N-methyltransferase SETD1A;Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B yes no 3 0.00020209 63.415 By MS/MS 1 0.80788 0.90047 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80788 0.90047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3154600 1730900 1423700 0 0 0 0 0 0 3154600 1730900 1423700 0 0 0 0 0 0 0 0 0 35217 1516 37009 185356 188076;188077 188077 2 VDHHVFISNR DGLQCVLCVGLQFGKVDHHVFISNRNKAIL LQFGKVDHHVFISNRNKAILQLDSPESAQS K V D N R N 0 1 1 1 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 2 0 0 10 0 1222.6207 Q14966 Q14966 1034 1043 ZNF638 Zinc finger protein 638 yes yes 3 0.00094689 56.548 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 2 1 1.1438 1.1002 10.128 8 Median 1.1761 1.1581 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88428 0.95837 15.071 2 0 Median 1.3111 1.1505 4.0838 2 0 Median 1.0708 1.1211 4.8955 2 0 Median 1.2604 1.0495 NaN 1 0 Median 12939000 5742700 7196200 244170 110520 133650 0 0 0 5849600 2807200 3042400 1223500 487780 735760 3696400 1580700 2115700 1925100 756520 1168600 35218 2903 37010 185357;185358;185359;185360;185361;185362;185363;185364;185365 188078;188079;188080;188081;188082;188083;188084;188085;188086 188081 9 VDHVQMIVLDEADK TPGRILDLIKKGVAKVDHVQMIVLDEADKL KVDHVQMIVLDEADKLLSQDFVQIMEDIIL K V D D K L 1 0 0 3 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 3 0 0 14 0 1610.7974 P26196 P26196 237 250 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 0.00044158 47.545 By matching By MS/MS By matching 1 1 1 0.78807 0.79418 27.93 3 Median NaN NaN NaN 0 0 Median 0.66156 0.59337 NaN 1 0 Median 0.78807 0.79418 NaN 1 0 Median 1.1941 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5689700 2983500 2706200 0 0 0 375870 241500 134370 4581500 2458200 2123300 732400 283830 448570 0 0 0 0 0 0 35219 2140 37011 185366;185367;185368 188087 188087 1 VDIAPHVR KLEKLMPEIVATASKVDIAPHVRDGYIMMF IVATASKVDIAPHVRDGYIMMFNYLPITFG K V D V R D 1 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 2 0 0 8 0 905.5083 Q92616 Q92616 1746 1753 GCN1L1 Translational activator GCN1 yes yes 2 0.018519 58.604 By matching By MS/MS 1 3 1.1493 1.0613 17.154 4 Median 1.0701 1.0745 NaN 1 0 Median 1.2343 1.0483 20.414 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8195600 3551400 4644200 1676300 806170 870090 6519300 2745200 3774100 0 0 0 0 0 0 0 0 0 0 0 0 35220 3544 37012 185369;185370;185371;185372 188088;188089;188090 188090 3 VDIDAPDVDVHGPDWHLK DVTVPKLEGELKGPKVDIDAPDVDVHGPDW DAPDVDVHGPDWHLKMPKMKMPKFSVPGFK K V D L K M 1 0 0 5 0 0 0 1 2 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 2026.9749 Q09666 Q09666 731 748 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3;4 1.4337E-06 68.129 By MS/MS By MS/MS By MS/MS By matching 5 2 5 1 0.79717 0.80082 51.821 13 Median 0.79717 0.79072 31.835 5 0 Median 2.0821 1.8387 105.64 2 1 Median 0.7356 0.8196 16.628 5 0 Median 0.70688 0.63507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 237330000 106060000 131260000 163780000 92487000 71288000 59383000 6193100 53190000 13879000 7221400 6657900 289420 160720 128690 0 0 0 0 0 0 35221 2749 37013 185373;185374;185375;185376;185377;185378;185379;185380;185381;185382;185383;185384;185385 188091;188092;188093;188094;188095;188096;188097;188098;188099 188093 9 VDIDAPDVSIEGPDAK DVTLPKADIEISGPKVDIDAPDVSIEGPDA DIDAPDVSIEGPDAKLKGPKFKMPEMNIKA K V D A K L 2 0 0 4 0 0 1 1 0 2 0 1 0 0 2 1 0 0 0 2 0 0 16 0 1639.7941 Q09666 Q09666 4352 4367 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.1608E-09 117.79 By MS/MS By MS/MS By MS/MS 1 3 2 0.73038 0.75555 28.605 6 Median 0.72651 0.7293 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76357 0.81406 26.199 3 3 Median 0.62346 0.59018 15.094 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110730000 61760000 48969000 35371000 20607000 14764000 0 0 0 64207000 34415000 29792000 11151000 6738100 4412800 0 0 0 0 0 0 35222 2749 37014 185386;185387;185388;185389;185390;185391 188100;188101;188102;188103;188104;188105;188106 188100 7 VDIDTPDIDIHGPEGK DVNLPKADIDVSGPKVDIDTPDIDIHGPEG DIDTPDIDIHGPEGKLKGPKFKMPDLHLKA K V D G K L 0 0 0 4 0 0 1 2 1 3 0 1 0 0 2 0 1 0 0 1 0 0 16 0 1719.8315 Q09666 Q09666 4096 4111 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00022799 41.554 By MS/MS By matching By matching 2 1 1 0.73596 0.7058 22.6 4 Median 0.5998 0.58393 17.549 2 0 Median 0.86389 0.75355 NaN 1 0 Median 0.82118 0.87961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28261000 16040000 12222000 15246000 9205300 6040900 4860000 2354400 2505700 8154900 4479900 3674900 0 0 0 0 0 0 0 0 0 35223 2749 37015 185392;185393;185394;185395 188107 188107 1 VDIDTPDINIEGSEGK EGDLKGPEVDIKGPKVDIDTPDINIEGSEG DIDTPDINIEGSEGKFKGPKFKIPEMHLKA K V D G K F 0 0 1 3 0 0 2 2 0 3 0 1 0 0 1 1 1 0 0 1 0 0 16 0 1700.8105 Q09666 Q09666 3712 3727 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.6069E-10 162.49 By MS/MS By MS/MS By MS/MS By matching 2 2 1 3 1.0224 0.93847 19.536 8 Median 0.69898 0.68481 17.583 2 0 Median 1.052 0.91581 3.9425 2 0 Median 0.87517 0.93525 NaN 1 0 Median 1.2184 1.0376 8.5334 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58979000 31695000 27283000 36318000 20092000 16226000 7125700 2830400 4295300 13185000 7714000 5470700 2350800 1059400 1291400 0 0 0 0 0 0 35224 2749 37016 185396;185397;185398;185399;185400;185401;185402;185403 188108;188109;188110;188111;188112 188109 5 VDIDVPDVDVQGPDWHLK EGDLKGPEVDIKGPKVDIDVPDVDVQGPDW DVPDVDVQGPDWHLKMPKVKMPKFSMPGFK K V D L K M 0 0 0 5 0 1 0 1 1 1 1 1 0 0 2 0 0 1 0 4 0 0 18 0 2046.0058 Q09666 Q09666 4170 4187 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 1.5835E-11 101.05 By MS/MS By MS/MS 1 1 0.78884 0.7367 0.45873 2 Median 0.73973 0.73432 NaN 1 0 Median 0.84121 0.7391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11465000 6084700 5380700 3415800 1762400 1653400 8049700 4322300 3727300 0 0 0 0 0 0 0 0 0 0 0 0 35225 2749 37017 185404;185405 188113;188114 188114 2 VDIDVPDVNIEGPDAK DVNLPKADLDVSGPKVDIDVPDVNIEGPDA DIDVPDVNIEGPDAKLKGPKFKMPEMNIKA K V D A K L 1 0 1 4 0 0 1 1 0 2 0 1 0 0 2 0 0 0 0 3 0 0 16 0 1694.8363 Q09666 Q09666 4224 4239 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 5.8317E-10 105.17 By MS/MS By matching By MS/MS By matching 1 2 2 1 0.8927 0.80897 50.297 6 Median 0.72402 0.72762 NaN 1 0 Median 1.0256 0.9053 13.439 2 0 Median 0.43161 0.4751 89.33 2 0 Median 0.94706 0.79497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 199460000 106930000 92531000 95132000 52763000 42369000 1201900 535160 666790 101830000 52986000 48841000 1301400 647110 654280 0 0 0 0 0 0 35226 2749 37018 185406;185407;185408;185409;185410;185411 188115;188116;188117 188117 3 VDIDVPDVNIEGPEGK DVNLPKADLDVSGPKVDIDVPDVNIEGPEG DIDVPDVNIEGPEGKLKGPKFKMPEMNIKA K V D G K L 0 0 1 3 0 0 2 2 0 2 0 1 0 0 2 0 0 0 0 3 0 0 16 0 1694.8363 Q09666 Q09666 3058 3073 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 8.7485E-10 102.66 By MS/MS By MS/MS By MS/MS 1 1 1 0.86569 0.85612 4.7845 3 Median NaN NaN NaN 0 0 Median 0.91032 0.81214 NaN 1 0 Median 0.84146 0.89354 NaN 1 0 Median 0.86569 0.85612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 136110000 69992000 66122000 0 0 0 28219000 13779000 14441000 99811000 51932000 47879000 8083000 4280700 3802300 0 0 0 0 0 0 35227 2749 37019 185412;185413;185414 188118;188119;188120;188121;188122;188123;188124 188120 7 VDIDVPDVNLEAPEGK DMNLPKADLGVSGPKVDIDVPDVNLEAPEG DIDVPDVNLEAPEGKLKGPKFKMPSMNIQT K V D G K L 1 0 1 3 0 0 2 1 0 1 1 1 0 0 2 0 0 0 0 3 0 0 16 0 1708.8519 Q09666 Q09666 1546 1561 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.4513E-10 125.54 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 2 0.83407 0.80229 9.6497 9 Median 0.79303 0.77908 2.0503 2 0 Median 0.92771 0.81352 13.325 3 0 Median 0.8236 0.89744 9.6397 2 0 Median 0.83993 0.78567 2.961 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108940000 57961000 50977000 65272000 35120000 30152000 8250600 3973600 4277000 32483000 17354000 15129000 2932900 1513900 1419000 0 0 0 0 0 0 35228 2749 37020 185415;185416;185417;185418;185419;185420;185421;185422;185423 188125;188126;188127;188128;188129;188130;188131;188132;188133;188134;188135;188136 188128 12 VDIDVPDVNVQGPDWHLK EGDLKGPEVDLKGPKVDIDVPDVNVQGPDW DVPDVNVQGPDWHLKMPKMKMPKFSMPGFK K V D L K M 0 0 1 4 0 1 0 1 1 1 1 1 0 0 2 0 0 1 0 4 0 0 18 0 2045.0218 Q09666 Q09666 2876 2893 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.3807E-06 68.41 By MS/MS By MS/MS 2 2 0.98886 0.92099 10.222 4 Median 0.99889 0.99595 2.826 2 0 Median 0.95386 0.84131 4.5557 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35536000 18479000 17057000 14190000 7700800 6488800 21347000 10778000 10568000 0 0 0 0 0 0 0 0 0 0 0 0 35229 2749 37021 185424;185425;185426;185427 188137;188138;188139;188140 188139 4 VDIEAPDVSLEGPEGK DVNLPKADVVVSGPKVDIEAPDVSLEGPEG DIEAPDVSLEGPEGKLKGPKFKMPEMHFKT K V D G K L 1 0 0 2 0 0 3 2 0 1 1 1 0 0 2 1 0 0 0 2 0 0 16 0 1653.8097 Q09666 Q09666 1162 1177 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 8.7485E-10 136.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 1 0.905 0.89197 16.857 10 Median 0.94282 0.92851 12.428 2 1 Median 1.3449 1.1909 19.227 2 1 Median 0.82085 0.89197 1.8927 2 0 Median 0.87403 0.81973 3.4179 2 0 Median 0.95996 1.0098 NaN 1 1 Median 0.8841 0.76605 NaN 1 0 Median 160500000 82554000 77948000 85977000 43845000 42132000 13149000 6451700 6697300 52742000 27726000 25015000 4952200 2650200 2302000 3465600 1775300 1690300 216680 105390 111290 35230 2749 37022 185428;185429;185430;185431;185432;185433;185434;185435;185436;185437 188141;188142;188143;188144;188145;188146;188147;188148;188149;188150;188151;188152;188153;188154 188146 14 VDIEGPDVNIEGPEGK DVNLPKADVDISGPKVDIEGPDVNIEGPEG DIEGPDVNIEGPEGKLKGPKLKMPEMNIKA K V D G K L 0 0 1 2 0 0 3 3 0 2 0 1 0 0 2 0 0 0 0 2 0 0 16 0 1666.805 Q09666 Q09666 2546 2561 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 4.8589E-10 149.41 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 0.82753 0.79159 5.8105 8 Median 0.76126 0.75043 1.6848 2 0 Median 0.93383 0.83189 NaN 1 0 Median 0.75237 0.8188 9.2754 2 0 Median 0.88868 0.82388 4.5893 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 233050000 125730000 107310000 134520000 73204000 61316000 20821000 10704000 10117000 63392000 34457000 28935000 14314000 7367400 6946600 0 0 0 0 0 0 35231 2749 37023 185438;185439;185440;185441;185442;185443;185444;185445 188155;188156;188157;188158;188159;188160;188161;188162;188163;188164;188165;188166;188167;188168;188169;188170;188171;188172 188165 18 VDIETPNLEGTLTGPR QGDVKGPQVALKGSRVDIETPNLEGTLTGP DIETPNLEGTLTGPRLGSPSGKTGTCRISM R V D P R L 0 1 1 1 0 0 2 2 0 1 2 0 0 0 2 0 3 0 0 1 0 0 16 0 1710.8788 Q09666 Q09666 541 556 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 5.2754E-10 138.94 By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 3 4 1 0.75758 0.7355 21.051 13 Median 0.74796 0.7355 15.379 3 0 Median 0.80638 0.69336 25.681 2 0 Median 0.74394 0.78525 10.089 3 0 Median 0.78523 0.6825 24.244 4 0 Median 1.1166 1.1668 NaN 1 0 Median NaN NaN NaN 0 0 Median 144400000 82897000 61507000 64131000 36935000 27196000 2158700 1266500 892240 65944000 38128000 27817000 7059500 3730200 3329300 5111000 2837800 2273200 0 0 0 35232 2749 37024 185446;185447;185448;185449;185450;185451;185452;185453;185454;185455;185456;185457;185458 188173;188174;188175;188176;188177;188178;188179;188180;188181;188182;188183;188184;188185;188186;188187;188188 188180 15 VDIIPGFEFDR LDFYLEYFPELKKKRVDIIPGFEFDRWLNT KKKRVDIIPGFEFDRWLNTPGWPPYLPDLS R V D D R W 0 1 0 2 0 0 1 1 0 2 0 0 0 2 1 0 0 0 0 1 0 0 11 0 1306.6558 Q9H4A4;A6NKB8 Q9H4A4 471 481 RNPEP Aminopeptidase B yes no 2 0.00013373 86.624 By MS/MS By MS/MS 1 1 0.95401 0.86891 9.868 2 Median 0.84539 0.81034 NaN 1 0 Median 1.0766 0.9317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13764000 6792000 6971700 7871400 4275600 3595700 5892300 2516300 3375900 0 0 0 0 0 0 0 0 0 0 0 0 35233 3964 37025 185459;185460 188189;188190;188191 188191 3 VDIKAPDVEGQGLDWSLK EGEMQVPDVDIRGPKVDIKAPDVEGQGLDW KAPDVEGQGLDWSLKIPKMKMPKFSMPSLK K V D L K I 1 0 0 3 0 1 1 2 0 1 2 2 0 0 1 1 0 1 0 2 0 0 18 1 1969.0157 Q09666 Q09666 1108 1125 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0015422 41.53 By MS/MS 3 0.90713 0.9879 21.107 3 Median 0.90713 0.9879 21.107 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38119000 17950000 20169000 38119000 17950000 20169000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35234 2749 37026 185461;185462;185463 188192;188193;188194 188192 3 VDILDPALLR FQPNTQVKVIAATNRVDILDPALLRSGRLD AATNRVDILDPALLRSGRLDRKIEFPMPNE R V D L R S 1 1 0 2 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1123.6601 R4GNH3;P17980;E9PM69;E9PKD5 R4GNH3 319 328 PSMC3 26S protease regulatory subunit 6A yes no 2 0.034259 32.841 By MS/MS By matching By MS/MS By matching 2 2 1 2 1.0737 0.94408 24.015 7 Median 1.0009 0.98498 28.713 2 0 Median 1.0273 0.87555 10.657 2 0 Median 1.0737 1.0561 NaN 1 0 Median 0.86146 0.75494 38.431 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124480000 62551000 61930000 21206000 11083000 10123000 87225000 43510000 43716000 14440000 7204700 7235600 1609800 753460 856300 0 0 0 0 0 0 35235 2050 37027 185464;185465;185466;185467;185468;185469;185470 188195;188196 188195 2 VDINAPDVDVHGPDWHLK EGDLKGPEVDIKGPKVDINAPDVDVHGPDW NAPDVDVHGPDWHLKMPKVKMPKFSMPGFK K V D L K M 1 0 1 4 0 0 0 1 2 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 2025.9908 Q09666 Q09666 3584 3601 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3;4 8.0026E-19 120.6 By MS/MS By MS/MS By matching By matching 4 2 4 1 0.80328 0.80602 24 11 Median 0.69454 0.6955 11.675 4 2 Median 1.0581 0.92886 2.1063 2 0 Median 0.86729 0.9494 35.564 4 0 Median 0.89347 0.80355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135250000 76878000 58371000 103510000 59934000 43576000 15138000 7216800 7921500 16280000 9546000 6733900 321300 181310 139990 0 0 0 0 0 0 35236 2749 37028 185471;185472;185473;185474;185475;185476;185477;185478;185479;185480;185481 188197;188198;188199;188200 188199 4 VDINAPDVDVQGPDWHLK EGDMKVPDVDIKGPKVDINAPDVDVQGPDW NAPDVDVQGPDWHLKMPKIKMPKISMPGFK K V D L K M 1 0 1 4 0 1 0 1 1 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 2016.9905 Q09666 Q09666 3132 3149 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 9.1906E-15 111.12 By MS/MS By MS/MS By matching By matching 3 3 2 1 0.90509 0.85003 8.8918 9 Median 0.81704 0.8128 5.1916 3 0 Median 0.98585 0.87067 1.7171 3 0 Median 0.81967 0.89411 17.034 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0801 0.92779 NaN 1 0 Median 155300000 84294000 71006000 137430000 75159000 62269000 12234000 5981200 6253200 5471200 3083400 2387700 0 0 0 0 0 0 166610 70295 96320 35237 2749 37029 185482;185483;185484;185485;185486;185487;185488;185489;185490 188201;188202;188203;188204;188205;188206 188204 6 VDINAPDVDVR EGDMQVPDLDIKGPKVDINAPDVDVRGPDW KGPKVDINAPDVDVRGPDWHLKMPKIKMPK K V D V R G 1 1 1 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 3 0 0 11 0 1211.6146 Q09666 Q09666 3914 3924 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00011469 140.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 0.9142 0.76743 14.419 8 Median 0.80218 0.76647 26.118 2 0 Median 0.89188 0.73477 3.7342 2 0 Median 0.94924 0.98791 NaN 1 0 Median 0.91974 0.80716 4.7214 2 0 Median 0.68338 0.71241 NaN 1 1 Median NaN NaN NaN 0 0 Median 234500000 118720000 115780000 66233000 33643000 32590000 56285000 28302000 27983000 65184000 33161000 32023000 41082000 20414000 20668000 5718100 3205300 2512700 0 0 0 35238 2749 37030 185491;185492;185493;185494;185495;185496;185497;185498;185499 188207;188208;188209;188210;188211;188212;188213;188214;188215;188216;188217;188218;188219;188220 188214 14 VDINAPDVDVRGPDWHLK EGDMQVPDLDIKGPKVDINAPDVDVRGPDW NAPDVDVRGPDWHLKMPKIKMPKISMPGFK K V D L K M 1 1 1 4 0 0 0 1 1 1 1 1 0 0 2 0 0 1 0 3 0 0 18 1 2045.033 Q09666 Q09666 3914 3931 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 2.1271E-06 60.034 By MS/MS 2 0.76633 0.8016 7.5802 2 Median 0.76633 0.8016 7.5802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42989000 22805000 20185000 42989000 22805000 20185000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35239 2749 37031 185500;185501 188221;188222;188223;188224 188223 4 VDINAPDVEVHGPDWHLK EGEIKAPDVDIKGPKVDINAPDVEVHGPDW NAPDVEVHGPDWHLKMPKVKMPKFSMPGFK K V D L K M 1 0 1 3 0 0 1 1 2 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 2040.0065 Q09666 Q09666 1492 1509 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3;4 7.0737E-25 136.92 By MS/MS By MS/MS By MS/MS By matching 5 4 3 1 0.75059 0.67154 18.333 13 Median 0.58912 0.58674 8.9722 5 2 Median 0.78646 0.68636 5.9538 4 0 Median 0.80712 0.86872 28.724 3 0 Median 0.75059 0.68063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 183970000 112830000 71139000 144530000 91359000 53172000 24105000 12143000 11962000 14711000 8989200 5722100 622210 339610 282600 0 0 0 0 0 0 35240 2749 37032 185502;185503;185504;185505;185506;185507;185508;185509;185510;185511;185512;185513;185514 188225;188226;188227;188228;188229;188230;188231;188232;188233;188234 188229 10 VDINAPDVEVQGK DVKGKKPDIDITGPKVDINAPDVEVQGKVK PKVDINAPDVEVQGKVKGSKFKMPFLSISS K V D G K V 1 0 1 2 0 1 1 1 0 1 0 1 0 0 1 0 0 0 0 3 0 0 13 0 1382.7042 Q09666 Q09666 3385 3397 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 5.6706E-07 150.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 3 1 1 1.0013 0.90298 19.519 11 Median 0.97249 0.97148 14.401 3 0 Plateau 0.92355 0.82557 NaN 1 0 Median 0.84471 0.91651 21.125 2 1 Median 1.0066 1.0419 11.611 3 1 Median 1.3748 1.4393 NaN 1 0 Median 1.0013 0.85786 NaN 1 0 Median 396710000 194310000 202400000 124200000 62423000 61780000 42373000 22294000 20080000 123370000 59170000 64205000 90853000 43684000 47169000 12434000 5067200 7366900 3470900 1671000 1799900 35241 2749 37033 185515;185516;185517;185518;185519;185520;185521;185522;185523;185524;185525 188235;188236;188237;188238;188239;188240;188241;188242;188243;188244;188245;188246;188247;188248;188249;188250;188251 188238 16 VDINAPDVGVQGPDWHLK EGDLKGPEVDIKGPKVDINAPDVGVQGPDW NAPDVGVQGPDWHLKMPKVKMPKFSMPGFK K V D L K M 1 0 1 3 0 1 0 2 1 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 1958.985 Q09666 Q09666 2620 2637 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 7.7327E-09 97.69 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 4 0.75597 0.75791 10.472 11 Median 0.74144 0.74503 13.973 3 0 Median 0.80355 0.70976 12.33 2 0 Median 0.73956 0.79218 6.2551 2 0 Median 0.81323 0.76082 11.348 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 172620000 88813000 83803000 123380000 62479000 60899000 11754000 5762900 5990700 33600000 18531000 15068000 3885900 2040600 1845300 0 0 0 0 0 0 35242 2749 37034 185526;185527;185528;185529;185530;185531;185532;185533;185534;185535;185536 188252;188253;188254;188255;188256;188257;188258;188259;188260;188261;188262;188263 188255 12 VDINTEDLEDGTCR AGYGGLSLSIEGPSKVDINTEDLEDGTCRV KVDINTEDLEDGTCRVTYCPTEPGNYIINI K V D C R V 0 1 1 3 1 0 2 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 14 0 1635.7046 P21333;H0Y5C6;Q60FE5 P21333 2090 2103 FLNA Filamin-A no no 2 9.3617E-08 113.69 By MS/MS 1 0.78721 0.64431 NaN 1 Median NaN NaN NaN 0 0 Median 0.78721 0.64431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8783600 4888200 3895400 0 0 0 8783600 4888200 3895400 0 0 0 0 0 0 0 0 0 0 0 0 35243 2088;3120 37035 185537 188264;188265 188265 2 VDINTPDVDVHGPDWHLK EGDLKGPEADIKGPKVDINTPDVDVHGPDW NTPDVDVHGPDWHLKMPKVKMPKFSMPGFK K V D L K M 0 0 1 4 0 0 0 1 2 1 1 1 0 0 2 0 1 1 0 3 0 0 18 0 2056.0014 Q09666 Q09666 4762 4779 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3;4 5.5347E-11 101.53 By MS/MS By matching By matching By matching 5 2 2 2 0.77844 0.75563 23.066 11 Median 0.78407 0.76713 5.228 5 0 Median 0.69218 0.6054 27.853 2 0 Median 0.70919 0.77916 13.67 2 0 Median 0.80927 0.73268 57.508 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94360000 54149000 40211000 75830000 44348000 31482000 9791700 4967800 4823900 7594500 4259800 3334700 1143200 572910 570240 0 0 0 0 0 0 35244 2749 37036 185538;185539;185540;185541;185542;185543;185544;185545;185546;185547;185548 188266;188267;188268;188269;188270;188271 188269 6 VDIQTEDLEDGTCK AGYGGISLAVEGPSKVDIQTEDLEDGTCKV KVDIQTEDLEDGTCKVSYFPTVPGVYIVST K V D C K V 0 0 0 3 1 1 2 1 0 1 1 1 0 0 0 0 2 0 0 1 0 0 14 0 1621.7141 O75369;E7EN95;H7C5L4 O75369 2045 2058 FLNB Filamin-B yes no 2 1.4229E-48 167.18 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35245 1664 37037 185549;185550 188272;188273 188273 2 VDIRPQLLK SLIRKYVSQYYPKLRVDIRPQLLKNALQRA YYPKLRVDIRPQLLKNALQRAVERGQLEQI R V D L K N 0 1 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1080.6655 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 294 302 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.008167 78.334 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 4 4 0.89845 0.89797 23.307 13 Median 0.88025 0.89797 NaN 1 0 Median 0.89845 0.9019 NaN 1 0 Median 0.71359 0.75894 NaN 1 0 Median 1.0346 0.96809 15.951 2 0 Median 0.67776 0.72981 7.5665 4 0 Median 1.2768 1.1393 20.399 4 0 Median 117640000 64717000 52928000 1668300 720990 947310 811980 432320 379650 21337000 12772000 8564900 2103500 1117800 985740 62920000 36556000 26364000 28804000 13118000 15686000 35246 3075 37038 185551;185552;185553;185554;185555;185556;185557;185558;185559;185560;185561;185562;185563 188274;188275;188276 188275 3 VDISAPDVDVHGPDWHLK EGEMKVPDVDIKGPKVDISAPDVDVHGPDW SAPDVDVHGPDWHLKMPKVKMPKFSMPGFK K V D L K M 1 0 0 4 0 0 0 1 2 1 1 1 0 0 2 1 0 1 0 3 0 0 18 0 1998.9799 Q09666 Q09666 1364 1381 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 2.9746E-06 53.278 By MS/MS By MS/MS By matching By matching 4 2 2 1 0.86531 0.90315 48.741 9 Median 0.79982 0.80288 21.371 4 1 Median 0.95368 0.83998 18.486 2 0 Median 0.89441 0.98339 12.037 2 0 Median 3.7073 3.3303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93278000 51174000 42104000 80645000 44264000 36381000 7458100 4060000 3398100 4888600 2775900 2112700 286120 73475 212640 0 0 0 0 0 0 35247 2749 37039 185564;185565;185566;185567;185568;185569;185570;185571;185572 188277;188278;188279;188280;188281;188282 188279 6 VDIVQAAWSPFQR VSINDRFQQRIFDPRVDIVQAAWSPFQRTS PRVDIVQAAWSPFQRTSWVQPLLMDLSPWR R V D Q R T 2 1 0 1 0 2 0 0 0 1 0 0 0 1 1 1 0 1 0 2 0 0 13 0 1515.7834 P38435 P38435 486 498 GGCX Vitamin K-dependent gamma-carboxylase yes yes 2 2.5039E-06 120.68 By MS/MS By MS/MS 1 1 0.86494 0.79339 12.294 2 Median 0.73414 0.72733 NaN 1 0 Median 1.019 0.86544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8598500 4732400 3866100 7317300 4088100 3229200 1281200 644350 636850 0 0 0 0 0 0 0 0 0 0 0 0 35248 2275 37040 185573;185574 188283;188284;188285 188283 3 VDKAAAAAAALQAK RRNTILRQARNHKLRVDKAAAAAAALQAKS RVDKAAAAAAALQAKSDEKAAVAGKKPVVG R V D A K S 8 0 0 1 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 14 1 1297.7354 P36578;H3BM89;H3BU31 P36578 351 364 RPL4 60S ribosomal protein L4 yes no 2;3 4.0832E-07 99.283 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 2 2 1.0991 1.0631 19.147 10 Median 1.1082 1.0631 1.5896 2 0 Median 1.2449 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1046 1.0492 28.681 3 1 Plateau 0.99623 1.0632 5.4873 2 0 Median 1.3822 1.2319 9.8417 2 0 Median 49590000 22242000 27347000 12224000 5492000 6731600 851380 299840 551540 0 0 0 6877900 3096200 3781800 18243000 8523800 9719200 11394000 4830700 6563200 35249 2260 37041 185575;185576;185577;185578;185579;185580;185581;185582;185583;185584 188286;188287;188288;188289;188290;188291;188292;188293;188294;188295;188296;188297;188298;188299 188292 14 VDKGVVPLAGTDGETTTQGLDGLSER FVRTIQDKGIVVGIKVDKGVVPLAGTDGET DGETTTQGLDGLSERCAQYKKDGADFAKWR K V D E R C 1 1 0 3 0 1 2 5 0 0 3 1 0 0 1 1 4 0 0 3 0 0 26 1 2614.3086 J3KSV6;J3QKP5;A8MVZ9;P09972;C9J8F3;K7EKH5 J3KSV6 109 134 ALDOC Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C yes no 3 1.5144E-31 105.46 By MS/MS By matching By MS/MS 2 2 2 0.972 0.99039 21.418 6 Median 0.972 1.0416 3.2206 2 0 Median 0.97886 0.91423 7.4036 2 0 Median 0.87712 0.99698 45.301 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61529000 29044000 32485000 44271000 21032000 23239000 1533500 891230 642230 15724000 7121100 8603100 0 0 0 0 0 0 0 0 0 35250 546 37042 185585;185586;185587;185588;185589;185590 188300;188301;188302;188303;188304 188303 5 VDKGVVPLAGTNGETTTQGLDGLSER FPQVIKSKGGVVGIKVDKGVVPLAGTNGET NGETTTQGLDGLSERCAQYKKDGADFAKWR K V D E R C 1 1 1 2 0 1 2 5 0 0 3 1 0 0 1 1 4 0 0 3 0 0 26 1 2613.3246 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 J3KPS3 109 134 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 3 6.498E-28 95.319 By MS/MS By matching By matching By matching 1 1 1 1 0.68154 0.66318 75.97 4 Median 0.6998 0.74994 NaN 1 0 Median 0.85131 0.79499 NaN 1 0 Median 0.14072 0.15777 NaN 1 0 Median 0.66375 0.58646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27108000 19151000 7957300 20664000 13665000 6999200 319550 167070 152480 5746400 5056900 689560 378050 261960 116080 0 0 0 0 0 0 35251 1310 37043 185591;185592;185593;185594 188305 188305 1 VDKLDASESLR AMPYFIQVMKEYLTKVDKLDASESLRKEEE YLTKVDKLDASESLRKEEEQATETQPIVYG K V D L R K 1 1 0 2 0 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1231.6408 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1614 1624 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 4.3383E-05 154.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 7 1 2 1 1.1836 1.1493 20.575 15 Median 1.1836 1.1891 18.989 5 2 Median 1.2578 1.1651 28.221 6 3 Median 0.79275 0.95054 NaN 1 0 Median 1.2152 1.1731 6.5984 2 1 Median 1.0012 1.1316 NaN 1 1 Median NaN NaN NaN 0 0 Median 110360000 48798000 61557000 27151000 12171000 14980000 65113000 27625000 37488000 7064100 3974700 3089400 7229100 3276200 3952900 3798500 1751700 2046800 0 0 0 35252 44 37044 185595;185596;185597;185598;185599;185600;185601;185602;185603;185604;185605;185606;185607;185608;185609;185610 188306;188307;188308;188309;188310;188311;188312;188313;188314;188315;188316;188317;188318;188319;188320;188321;188322;188323;188324;188325;188326 188314 21 VDKLDASESLRK AMPYFIQVMKEYLTKVDKLDASESLRKEEE LTKVDKLDASESLRKEEEQATETQPIVYGQ K V D R K E 1 1 0 2 0 0 1 0 0 0 2 2 0 0 0 2 0 0 0 1 0 0 12 2 1359.7358 A0A087WVQ6;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 1614 1625 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.069433 13.404 By MS/MS By matching 1 1 1.0557 1.1203 1.8729 2 Median 1.0739 1.1352 NaN 1 0 Median 1.0377 1.1056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1549400 712780 836630 933770 458070 475700 615630 254710 360920 0 0 0 0 0 0 0 0 0 0 0 0 35253 44 37045 185611;185612 188327;188328 188327 2 VDKLYAGLKDLAEER DSHPESERISMRQSKVDKLYAGLKDLAEER VDKLYAGLKDLAEERRGKLDERHRLFQLNR K V D E R R 2 1 0 2 0 0 2 1 0 0 3 2 0 0 0 0 0 0 1 1 0 0 15 2 1718.9203 Q01082;A0A087WUZ3 Q01082 1676 1690 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3;4 0.00011132 54.7 By MS/MS 2 0.88242 1.1658 4.22 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88242 1.1658 4.22 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7273000 3950200 3322800 0 0 0 0 0 0 7273000 3950200 3322800 0 0 0 0 0 0 0 0 0 35254 2681 37046 185613;185614 188329;188330;188331 188329 3 VDLAAFQTR SQQLDASEQHKALLKVDLAAFQTRGNQLCS HKALLKVDLAAFQTRGNQLCSLISGIIRAS K V D T R G 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1019.54 Q53GS7 Q53GS7 274 282 GLE1 Nucleoporin GLE1 yes yes 2 0.004872 74.464 By MS/MS 1 1.304 1.3442 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.304 1.3442 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6634600 2731700 3903000 0 0 0 0 0 0 6634600 2731700 3903000 0 0 0 0 0 0 0 0 0 35255 3031 37047 185615 188332 188332 1 VDLAVTRDEAAK ENEAGGLKLDGRQLKVDLAVTRDEAAKLQT QLKVDLAVTRDEAAKLQTTKVKKPTGTRNL K V D A K L 3 1 0 2 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 12 1 1286.683 Q9NW13 Q9NW13 414 425 RBM28 RNA-binding protein 28 yes yes 2 0.002938 66.595 By matching By MS/MS 1 1 1.102 1.0821 23.247 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83218 0.91803 NaN 1 0 Median 1.4592 1.2754 NaN 1 0 Median 4579300 1699300 2880000 0 0 0 0 0 0 0 0 0 0 0 0 3419000 1204400 2214600 1160300 494910 665420 35256 4145 37048 185616;185617 188333 188333 1 VDLGGFAGLFDLK KIQPLAKATSRSGCKVDLGGFAGLFDLKAA CKVDLGGFAGLFDLKAAGFKDPLLASGTDG K V D L K A 1 0 0 2 0 0 0 3 0 0 3 1 0 2 0 0 0 0 0 1 0 0 13 0 1350.7184 P22102 P22102 468 480 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.014456 33.866 By MS/MS By matching 3 1 1.4616 1.3447 30.15 4 Linear 1.161 1.1327 34.047 3 0 Plateau 1.1397 1.0156 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5700400 2574800 3125600 5323200 2406100 2917100 377250 168680 208570 0 0 0 0 0 0 0 0 0 0 0 0 35257 2098 37049 185618;185619;185620;185621 188334 188334 1 VDLGVLGK ISKTIEEYAVCPDLKVDLGVLGKQQFDLEN AVCPDLKVDLGVLGKQQFDLENKFKPFTVE K V D G K Q 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 799.48035 P36871;A0A3B3ITK7 P36871 165 172 PGM1 Phosphoglucomutase-1 yes no 2 0.0089543 79.116 By MS/MS By MS/MS By matching 1 1 1 1.3143 1.1374 8.0828 3 Plateau 1.1366 1.0714 NaN 1 1 Median 1.3758 1.1533 NaN 1 0 Median 0.97701 0.98139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20526000 9485300 11040000 9997800 5062600 4935200 9782800 4018500 5764300 745010 404180 340820 0 0 0 0 0 0 0 0 0 35258 2262 37050 185622;185623;185624 188335;188336 188335 2 VDLLGEFQSALPK LTPAPSKKADSVAAKVDLLGEFQSALPKIN AKVDLLGEFQSALPKINSHPTRSQKKSSQK K V D P K I 1 0 0 1 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1415.766 Q9H9L3 Q9H9L3 116 128 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 yes yes 2 0.027199 27.115 By matching By matching By matching By MS/MS 1 1 1 1 1.0214 0.80639 32.926 4 Linear 0.65906 0.63679 NaN 1 0 Median 0.66256 0.58178 NaN 1 0 Median 0.9161 1.0212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1338 1.1187 NaN 1 0 Median NaN NaN NaN 0 0 Median 2216900 1100800 1116100 145890 88971 56922 326850 218940 107910 857820 393150 464660 0 0 0 886350 399710 486630 0 0 0 35259 4001 37051 185625;185626;185627;185628 188337 188337 1 VDLLNQEIEFLK DVDNAYMIKVELQSKVDLLNQEIEFLKVLY QSKVDLLNQEIEFLKVLYDAEISQIHQSVT K V D L K V 0 0 1 1 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 12 0 1459.7922 CON__P35908;CON__P35908v2;P35908 CON__P35908 309 320 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.9218E-39 179 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 5 2 3 0.017187 0.017077 143.15 20 Median 0.019539 0.017523 135.49 5 5 Median 0.013016 0.011026 102.23 6 6 Median 0.085937 0.082959 97.025 4 4 Median 0.0099872 0.0086209 46.294 2 2 Median 0.0059056 0.0060121 173.79 3 3 Median NaN NaN NaN 0 0 Median 470430000 463450000 6977000 177560000 175490000 2062400 169520000 167400000 2116300 38130000 35864000 2265800 5194100 5137600 56491 80030000 79554000 476040 0 0 0 + 35260 764;765 37052 185629;185630;185631;185632;185633;185634;185635;185636;185637;185638;185639;185640;185641;185642;185643;185644;185645;185646;185647;185648;185649 188338;188339;188340;188341;188342;188343;188344;188345;188346;188347;188348;188349;188350;188351;188352;188353;188354;188355;188356;188357;188358;188359;188360;188361;188362;188363 188339 26 VDLNSNGFICDYELHELFK ISKDELDELKEAFAKVDLNSNGFICDYELH SNGFICDYELHELFKEANMPLPGYKVREII K V D F K E 0 0 2 2 1 0 2 1 1 1 3 1 0 2 0 1 0 0 1 1 0 0 19 0 2312.0783 P13797;U3KQI3 P13797 24 42 PLS3 Plastin-3 yes no 3 0.0045658 24.893 By MS/MS By MS/MS 1 1 1.1128 0.99152 6.5477 2 Median 1.0953 1.0385 NaN 1 0 Median 1.1305 0.94666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19984000 8897000 11087000 7956200 3679300 4276900 12028000 5217700 6810500 0 0 0 0 0 0 0 0 0 0 0 0 35261 1995 37053 185650;185651 188364;188365;188366 188364 3 VDLPDKYPFK GPQGTPYEGGVWKVRVDLPDKYPFKSPSIE VWKVRVDLPDKYPFKSPSIEL_________ R V D F K S 0 0 0 2 0 0 0 0 0 0 1 2 0 1 2 0 0 0 1 1 0 0 10 1 1220.6441 H7C4M9;C9JZG9;C9JZY6;P62256;C9J8Q9 H7C4M9 47 56 UBE2H Ubiquitin-conjugating enzyme E2 H yes no 3 0.046716 28.797 By MS/MS 1 0.94321 0.94663 NaN 1 Median 0.94321 0.94663 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3215500 1577900 1637500 3215500 1577900 1637500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35262 731 37054 185652 188367 188367 1 VDLPLIDSLIR IYASQTEQEYLKIEKVDLPLIDSLIRVLQN KIEKVDLPLIDSLIRVLQNMEQCQKKPENS K V D I R V 0 1 0 2 0 0 0 0 0 2 3 0 0 0 1 1 0 0 0 1 0 0 11 0 1252.7391 Q96ER3 Q96ER3 348 358 SAAL1 Protein SAAL1 yes yes 2 0.01596 55.567 By MS/MS 1 0.8934 0.75116 NaN 1 Median NaN NaN NaN 0 0 Median 0.8934 0.75116 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14001000 7996300 6004500 0 0 0 14001000 7996300 6004500 0 0 0 0 0 0 0 0 0 0 0 0 35263 3639 37055 185653 188368 188368 1 VDLQSLPTR VENEKINAEKSSKQKVDLQSLPTRAYLDQT KSSKQKVDLQSLPTRAYLDQTVVPILLQGL K V D T R A 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 9 0 1027.5662 Q9C005 Q9C005 46 54 DPY30 Protein dpy-30 homolog yes yes 2 0.00067245 105.57 By MS/MS By MS/MS By MS/MS 1 1 2 0.85172 0.86556 5.8744 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80213 0.81255 NaN 1 0 Median 1.1034 0.86665 NaN 1 0 Median 0.85172 0.90039 5.7579 2 0 Median NaN NaN NaN 0 0 Median 21278000 11374000 9903200 0 0 0 0 0 0 11177000 6407700 4769500 6027700 2746900 3280800 4072700 2219700 1853000 0 0 0 35264 3902 37056 185654;185655;185656;185657 188369;188370;188371;188372 188369 4 VDLSTSTDWK TAGVRTWAPLAMAAKVDLSTSTDWKEAKSF AMAAKVDLSTSTDWKEAKSFLKGLSDKQRE K V D W K E 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 2 2 1 0 1 0 0 10 0 1150.5506 Q9BQ69 Q9BQ69 87 96 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 2 0.0012826 107.15 By MS/MS By MS/MS 2 2 1.1422 1.0057 24.024 2 Median 0.91827 0.8486 NaN 1 1 Median 1.4207 1.1919 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50201000 30248000 19953000 43357000 26608000 16749000 6843800 3639500 3204300 0 0 0 0 0 0 0 0 0 0 0 0 35265 3785 37057 185658;185659;185660;185661 188373;188374;188375;188376 188373 4 VDLSTSTDWKEAK TAGVRTWAPLAMAAKVDLSTSTDWKEAKSF AKVDLSTSTDWKEAKSFLKGLSDKQREEHY K V D A K S 1 0 0 2 0 0 1 0 0 0 1 2 0 0 0 2 2 1 0 1 0 0 13 1 1478.7253 Q9BQ69 Q9BQ69 87 99 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 3 0.022325 23.456 By MS/MS By matching 1 1 2.2094 2.0052 2.3382 2 Median NaN NaN NaN 0 0 Median 2.2256 2.0387 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1934 1.9723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2382700 853080 1529700 0 0 0 1652500 580750 1071700 0 0 0 730240 272330 457920 0 0 0 0 0 0 35266 3785 37058 185662;185663 188377 188377 1 VDLVDENFTELR KEVLKSEETSKNQIKVDLVDENFTELRGEI QIKVDLVDENFTELRGEIAGPPDTPYEGGR K V D L R G 0 1 1 2 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1448.7147 P61086;D6RDM7 P61086 29 40 UBE2K Ubiquitin-conjugating enzyme E2 K yes no 2 0.0044584 43.512 By matching By MS/MS By matching 1 1 2 1.2761 1.1476 23.339 4 Linear 1.3776 1.3 NaN 1 0 Median 1.1397 0.96488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0235 0.8141 13.119 2 0 Median 10228000 4855300 5372700 4627400 2038500 2589000 3195600 1579400 1616200 0 0 0 0 0 0 0 0 0 2405000 1237400 1167500 35267 2543 37059 185664;185665;185666;185667 188378 188378 1 VDLVDESGYVSGYK ERFDPSGKGKGKAGRVDLVDESGYVSGYKH RVDLVDESGYVSGYKHAGTYDQKVQGGK__ R V D Y K H 0 0 0 2 0 0 1 2 0 0 1 1 0 0 0 2 0 0 2 3 0 0 14 0 1529.725 O94811 O94811 193 206 TPPP Tubulin polymerization-promoting protein yes yes 2 0.00019497 72.34 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35268 1726 37060 185668 188379 188379 1 VDLVLLGK LQVARVLAKLAEKEKVDLVLLGKQAIDDDC KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K V D G K Q 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 8 0 855.54295 P38117 P38117 117 124 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.0094483 60.799 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.0081 0.96558 28.347 5 Median 0.96909 0.92224 6.4941 2 0 Median 1.5729 1.3232 NaN 1 0 Median 1.0081 0.94937 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6799 1.726 NaN 1 0 Median NaN NaN NaN 0 0 Median 40976000 20403000 20573000 29333000 15544000 13789000 4405200 1601000 2804200 6074600 2879100 3195500 0 0 0 1163700 378920 784770 0 0 0 35269 2272 37061 185669;185670;185671;185672;185673 188380;188381;188382;188383;188384 188382 5 VDMKEEPLAVSK TSRSSKQRLKIPLVKVDMKEEPLAVSKLTR LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K V D S K L 1 0 0 1 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 2 0 0 12 1 1344.6959 P46013 P46013 2489 2500 MKI67 Antigen KI-67 yes yes 3 0.0011668 62.891 By MS/MS 2 0.84984 0.96266 3.6719 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84984 0.96266 3.6719 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33383000 18616000 14767000 0 0 0 0 0 0 33383000 18616000 14767000 0 0 0 0 0 0 0 0 0 35270 2335 37062 185674;185675 188385;188386 188386 2 VDMMDLPR ______________________________ ______________________________ M V D P R S 0 1 0 2 0 0 0 0 0 0 1 0 2 0 1 0 0 0 0 1 0 0 8 0 975.45177 P35244 P35244 2 9 RPA3 Replication protein A 14 kDa subunit yes yes 2 0.0090439 61.999 By MS/MS By matching By matching By matching 1 1 1 1 1.0805 0.89727 12.137 4 Median 0.89835 0.87533 NaN 1 0 Median 1.2299 1.0364 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1666 0.91976 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0008 0.77311 NaN 1 0 Median 7565600 3725700 3840000 4995400 2551500 2443900 759510 326070 433440 0 0 0 1344900 641260 703620 0 0 0 465850 206810 259030 35271 2236 37063 185676;185677;185678;185679 188387 188387 1 VDMVTEQLHSK DKEVVTDENKSLIQKVDMVTEQLHSKKFCL LIQKVDMVTEQLHSKKFCLENMTQKFKEFQ K V D S K K 0 0 0 1 0 1 1 0 1 0 1 1 1 0 0 1 1 0 0 2 0 0 11 0 1285.6336 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 2957 2967 DST Dystonin yes no 3 0.048658 26.703 By MS/MS 1 1.229 1.074 NaN 1 Median NaN NaN NaN 0 0 Median 1.229 1.074 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5670200 2239200 3431000 0 0 0 5670200 2239200 3431000 0 0 0 0 0 0 0 0 0 0 0 0 35272 934 37064 185680 188388 188388 1 VDNAYWLWTFQGR TGRYVVTSVSWWSHKVDNAYWLWTFQGRLL HKVDNAYWLWTFQGRLLQKNNKDRFCQLLW K V D G R L 1 1 1 1 0 1 0 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 13 0 1654.7892 P55884 P55884 677 689 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.0016366 69.349 By MS/MS 3 1.1255 1.0881 10.722 3 Plateau 1.1255 1.0881 10.722 3 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13195000 5845100 7349800 13195000 5845100 7349800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35273 2504 37065 185681;185682;185683 188389;188390;188391 188390 3 VDNDENEHQLSLR LFGCELKADKDYHFKVDNDENEHQLSLRTV FKVDNDENEHQLSLRTVSLGAGAKDELHIV K V D L R T 0 1 2 2 0 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1567.7227 P06748;E5RGW4 P06748 33 45 NPM1 Nucleophosmin yes no 2;3 1.4272E-40 192.3 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 10 11 14 5 11 1.1736 0.98836 36.941 58 Median 1.1217 1.1017 25.13 8 0 Median 1.2487 1.0377 7.6744 10 0 Median 0.98227 0.9635 13.624 11 0 Median 1.1888 0.97883 7.3935 14 1 Median 0.8358 0.88436 112.66 5 4 Median 1.2215 0.96973 11.795 10 2 Median 4185800000 1819000000 2366800000 107100000 50004000 57098000 194040000 83882000 110160000 2180000000 1024600000 1155400000 1335000000 580690000 754350000 270450000 37106000 233350000 99087000 42622000 56465000 35274 1877 37066 185684;185685;185686;185687;185688;185689;185690;185691;185692;185693;185694;185695;185696;185697;185698;185699;185700;185701;185702;185703;185704;185705;185706;185707;185708;185709;185710;185711;185712;185713;185714;185715;185716;185717;185718;185719;185720;185721;185722;185723;185724;185725;185726;185727;185728;185729;185730;185731;185732;185733;185734;185735;185736;185737;185738;185739;185740;185741;185742 188392;188393;188394;188395;188396;188397;188398;188399;188400;188401;188402;188403;188404;188405;188406;188407;188408;188409;188410;188411;188412;188413;188414;188415;188416;188417;188418;188419;188420;188421;188422;188423;188424;188425;188426;188427;188428;188429;188430;188431;188432;188433;188434;188435;188436;188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447;188448;188449;188450;188451;188452;188453;188454;188455;188456;188457;188458;188459;188460;188461;188462;188463;188464;188465;188466;188467;188468;188469;188470;188471;188472;188473;188474;188475;188476;188477;188478;188479;188480;188481;188482;188483;188484;188485;188486;188487;188488;188489;188490;188491;188492;188493;188494;188495;188496;188497;188498;188499 188483 108 VDNEFDQR SALKTLMAQSIYGGRVDNEFDQRLLNTFLE QSIYGGRVDNEFDQRLLNTFLERLFTTRSF R V D Q R L 0 1 1 2 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1021.4465 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4256 4263 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0035864 87.181 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.084 1.024 11.932 8 Median 1.1766 1.1858 11.699 2 1 Median 1.0818 0.91783 1.7978 2 0 Median 0.99957 1.088 8.4406 2 0 Median 1.1278 0.9849 5.3788 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21630000 9811000 11819000 1902200 733280 1168900 7366100 3362700 4003400 7745100 3638200 4107000 4616100 2076800 2539300 0 0 0 0 0 0 35275 2865 37067 185743;185744;185745;185746;185747;185748;185749;185750 188500;188501;188502;188503;188504;188505;188506;188507;188508 188505 9 VDNEFLNMLLDK FTIKFLKHSALKTPRVDNEFLNMLLDKGAV TPRVDNEFLNMLLDKGAVKTKNCFFEIIKP R V D D K G 0 0 2 2 0 0 1 0 0 0 3 1 1 1 0 0 0 0 0 1 0 0 12 0 1449.7174 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 412 423 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.016133 34.532 By matching By matching By MS/MS By matching 2 1 1 1 1.0308 1.0063 27.494 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94294 1.0035 0.39396 2 0 Median 2.0348 1.814 NaN 1 0 Median 1.0308 1.066 NaN 1 0 Median 1.0543 0.90977 NaN 1 0 Median 7001300 3381000 3620200 0 0 0 0 0 0 2594900 1306100 1288800 66273 17510 48763 4261800 2024700 2237200 78237 32749 45488 35276 1437 37068 185751;185752;185753;185754;185755 188509 188509 1 VDNIQAGELTEGIWR LSRQGIIFKNSKTGKVDNIQAGELTEGIWR VDNIQAGELTEGIWRRVALGHGLKLLTKNG K V D W R R 1 1 1 1 0 1 2 2 0 2 1 0 0 0 0 0 1 1 0 1 0 0 15 0 1699.8529 Q08945 Q08945 40 54 SSRP1 FACT complex subunit SSRP1 yes yes 2 9.4746E-10 112.13 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 1 4 3 1.2195 1.1513 21.958 10 Median 0.8513 0.82028 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4571 1.626 NaN 1 0 Median 1.2637 1.0888 NaN 1 0 Median 1.1698 1.1864 16.222 4 0 Median 1.3481 1.0267 14.509 3 1 Median 23674000 11116000 12557000 4100300 2126700 1973600 0 0 0 2240100 1022100 1218000 1736800 822840 913910 13732000 6380400 7351500 1864600 764340 1100200 35277 2743 37069 185756;185757;185758;185759;185760;185761;185762;185763;185764;185765 188510;188511;188512;188513;188514;188515;188516;188517 188513 8 VDNLSDEGALNISDR PLVYLMLTTHPSLYRVDNLSDEGALNISDR VDNLSDEGALNISDRTIPQPPILQLSVEKL R V D D R T 1 1 2 3 0 0 1 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 15 0 1616.7642 O95486 O95486 949 963 SEC24A Protein transport protein Sec24A yes yes 2 6.2909E-14 106.49 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35278 1777 37070 185766 188518 188518 1 VDNLTYR YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR K V D Y R T 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 7 0 879.44503 J3QL05;J3KP15;Q01130;Q9BRL6 J3QL05 18 24 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 2.2887E-12 154.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 1 1.0738 1.045 11.323 8 Median 1.0685 1.0244 3.559 2 0 Median 1.2499 1.0395 NaN 1 0 Median 0.99007 0.9649 NaN 1 0 Median 1.3255 1.1059 NaN 1 1 Median 1.0158 1.0479 10.773 2 0 Median 1.6397 1.366 NaN 1 0 Median 50772000 22969000 27803000 11322000 5274500 6047600 10249000 4645900 5602900 10644000 5197200 5446300 11774000 4850200 6923300 4714300 2247300 2467000 2070100 754090 1316000 35279 1307 37071 185767;185768;185769;185770;185771;185772;185773;185774;185775 188519;188520;188521;188522;188523;188524;188525;188526 188526 8 VDNSSLTGESEPQTR RIPADLRIISANGCKVDNSSLTGESEPQTR VDNSSLTGESEPQTRSPDFTNENPLETRNI K V D T R S 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 3 2 0 0 1 0 0 15 0 1618.7435 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;P20648;M0QXF2 P05023 213 227 ATP1A1;ATP1A3;ATP1A2;ATP4A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1 yes no 2 1.8404E-09 123.84 By MS/MS By MS/MS 4 4 0.96398 0.83499 16.01 8 Median 0.84016 0.83028 22.928 4 0 Median 0.99126 0.83499 5.7754 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32644000 16509000 16135000 8346900 4048600 4298200 24297000 12461000 11836000 0 0 0 0 0 0 0 0 0 0 0 0 35280 1857 37072 185776;185777;185778;185779;185780;185781;185782;185783 188527;188528;188529;188530;188531;188532;188533;188534;188535;188536;188537;188538;188539;188540 188533 14 VDPAFDKDR FSKTEMSEVLTEILRVDPAFDKDRFLKQCE LTEILRVDPAFDKDRFLKQCENDIIPNVLE R V D D R F 1 1 0 3 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 9 1 1061.5142 O43615;M0QXM9 O43615 306 314 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.023234 59.245 By matching By MS/MS By matching 1 1 2 1.435 1.4384 31.817 4 Median 0.96116 1.0244 NaN 1 0 Median 1.2368 1.1538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7691 1.8685 5.8214 2 0 Median NaN NaN NaN 0 0 Median 3388600 1189700 2198900 238970 123260 115720 724400 341140 383260 0 0 0 0 0 0 2425200 725340 1699900 0 0 0 35281 1577 37073 185784;185785;185786;185787 188541 188541 1 VDPALFPPVPLFTAVPSR GLVLPDIGVEGSEQKVDPALFPPVPLFTAV ALFPPVPLFTAVPSRSFFPRGFLWDEGFHQ K V D S R S 2 1 0 1 0 0 0 0 0 0 2 0 0 2 5 1 1 0 0 3 0 0 18 0 1922.0666 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 424 441 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 5.4385E-06 75.045 By MS/MS By MS/MS By MS/MS 2 1 1 0.55908 0.58096 12.122 4 Median 0.53802 0.53212 16.203 2 0 Median NaN NaN NaN 0 0 Median 0.52784 0.56563 NaN 1 0 Median 0.73328 0.62656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8183800 5163400 3020500 3740600 2380400 1360200 0 0 0 3813500 2422800 1390700 629720 360120 269600 0 0 0 0 0 0 35282 2835 37074 185788;185789;185790;185791 188542;188543;188544;188545 188544 4 VDPEIQNVK EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ QPLNVKVDPEIQNVKAQEREQIKTLNNKFA K V D V K A 0 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 9 0 1040.5502 CON__P35908;CON__P35908v2;P35908 CON__P35908 173 181 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.1139E-12 151.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 10 5 10 5 5 0.04758 0.041506 122.9 40 Median 0.13013 0.1229 132.35 8 8 Median 0.044245 0.039221 99.278 9 9 Median 0.037924 0.038587 133.95 5 5 Median 0.037924 0.033154 135.92 8 8 Median 0.11594 0.11874 119.89 5 5 Median 0.055431 0.045865 108.15 5 5 Median 533730000 509980000 23748000 68283000 63922000 4360800 143160000 138250000 4912700 50752000 49116000 1636000 115830000 111350000 4479900 66734000 59979000 6754800 88975000 87372000 1603400 + 35283 764;765 37075 185792;185793;185794;185795;185796;185797;185798;185799;185800;185801;185802;185803;185804;185805;185806;185807;185808;185809;185810;185811;185812;185813;185814;185815;185816;185817;185818;185819;185820;185821;185822;185823;185824;185825;185826;185827;185828;185829;185830;185831;185832;185833;185834;185835 188546;188547;188548;188549;188550;188551;188552;188553;188554;188555;188556;188557;188558;188559;188560;188561;188562;188563;188564;188565;188566;188567;188568;188569;188570;188571;188572;188573;188574;188575;188576;188577;188578;188579;188580;188581;188582;188583;188584;188585;188586;188587;188588;188589 188575 44 VDPEIQNVKAQER EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ VKVDPEIQNVKAQEREQIKTLNNKFASFID K V D E R E 1 1 1 1 0 2 2 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 13 1 1524.7896 CON__P35908;CON__P35908v2;P35908 CON__P35908 173 185 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 0.0023063 54.343 By MS/MS By MS/MS 1 1 0.058171 0.054945 150.17 2 Median NaN NaN NaN 0 0 Median 0.16589 0.15889 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.020398 0.019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4873300 4557100 316240 0 0 0 1238100 1018400 219710 0 0 0 3635200 3538700 96528 0 0 0 0 0 0 + 35284 764;765 37076 185836;185837 188590;188591 188591 2 VDPEIQNVKAQEREQIK EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ PEIQNVKAQEREQIKTLNNKFASFIDKVRF K V D I K T 1 1 1 1 0 3 3 0 0 2 0 2 0 0 1 0 0 0 0 2 0 0 17 2 2023.0698 CON__P35908;CON__P35908v2;P35908 CON__P35908 173 189 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 0.00071495 58.09 By MS/MS 2 0.1538 0.1637 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1538 0.1637 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4004400 3792300 212100 0 0 0 0 0 0 0 0 0 4004400 3792300 212100 0 0 0 0 0 0 + 35285 764;765 37077 185838;185839 188592;188593 188593 2 VDPLETELGVK QELLGEERRNKKGPRVDPLETELGVKTLDC KGPRVDPLETELGVKTLDCRKPLIPFEEFI R V D V K T 0 0 0 1 0 0 2 1 0 0 2 1 0 0 1 0 1 0 0 2 0 0 11 0 1198.6445 A0A0D9SG77;A0A1B0GVL3;Q05086 A0A0D9SG77 402 412 UBE3A Ubiquitin-protein ligase E3A yes no 2 0.039759 28.013 By MS/MS 1 0.99428 0.98791 NaN 1 Median 0.99428 0.98791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2287900 1137500 1150400 2287900 1137500 1150400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35286 272 37078 185840 188594 188594 1 VDPLFTELLNGIR KAADALGKLISIHIKVDPLFTELLNGIRAM IKVDPLFTELLNGIRAMEDPGVRDTMLQAL K V D I R A 0 1 1 1 0 0 1 1 0 1 3 0 0 1 1 0 1 0 0 1 0 0 13 0 1485.8191 Q92616 Q92616 2381 2393 GCN1L1 Translational activator GCN1 yes yes 2 0.012529 34.887 By matching By MS/MS 1 3 0.99352 0.90627 47.492 4 Median 0.88613 0.88627 NaN 1 0 Median 1.1139 0.92672 56.216 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4585000 2247800 2337200 2129500 1068600 1060900 2455500 1179200 1276300 0 0 0 0 0 0 0 0 0 0 0 0 35287 3544 37079 185841;185842;185843;185844 188595 188595 1 VDPMAIVVFHQADIGEYVR LGFGVAAKSTQDCRKVDPMAIVVFHQADIG AIVVFHQADIGEYVRHEETLT_________ K V D V R H 2 1 0 2 0 1 1 1 1 2 0 0 1 1 1 0 0 0 1 4 0 0 19 0 2158.0881 Q9Y221 Q9Y221 156 174 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 3 5.0893E-05 38.888 By MS/MS By matching 1 1 1.1551 1.0789 25.71 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85035 0.89956 NaN 1 0 Median 1.569 1.294 NaN 1 0 Median 2622400 1267700 1354700 0 0 0 0 0 0 0 0 0 0 0 0 2386600 1193700 1192900 235870 74040 161830 35288 4365 37080 185845;185846 188596;188597 188597 2 VDPSQPIDLTQLVNGR PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG DPSQPIDLTQLVNGRGVTIQPLKRDYGVQL R V D G R G 0 1 1 2 0 2 0 1 0 1 2 0 0 0 2 1 1 0 0 2 0 0 16 0 1750.9214 Q9P015;E5RIZ4;E5RHF4 Q9P015 110 125 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 0.00076393 42.556 By MS/MS By MS/MS By matching 1 1 1 1.0882 0.917 16.94 3 Median 0.81327 0.78095 NaN 1 0 Median 1.0882 0.917 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3001 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5053800 2604100 2449600 2990400 1646400 1344000 1906000 892840 1013200 0 0 0 157380 64911 92470 0 0 0 0 0 0 35289 4197 37081 185847;185848;185849 188598;188599;188600 188600 3 VDPTVENEETFMNR STSETPQPPRKKRARVDPTVENEETFMNRV RVDPTVENEETFMNRVEVKVKIPEELKPWL R V D N R V 0 1 2 1 0 0 3 0 0 0 0 0 1 1 1 0 2 0 0 2 0 0 14 0 1679.7461 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YM21;H0YMT8;H0YLV1;H0YNE0;H0YNX3 B3KTM8 165 178 MORF4L1 Mortality factor 4-like protein 1 yes no 2 7.0014E-07 155.53 By MS/MS By matching 3 1 0.73241 0.9211 23.07 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86884 0.94529 16.834 3 0 Plateau 0.64287 0.55664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50163000 27623000 22540000 0 0 0 0 0 0 47502000 26045000 21457000 2660900 1577300 1083600 0 0 0 0 0 0 35290 585 37082;37083 185850;185851;185852;185853 188601;188602;188603;188604;188605;188606 188604 228 6 VDPVNFK GALSELSDLHAHKLRVDPVNFKLLSHSLLV DLHAHKLRVDPVNFKLLSHSLLVTLASHLP R V D F K L 0 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 2 0 0 7 0 817.4334 A0A2R8Y7C0;P69905;G3V1N2;P02008;CON__P01966 CON__P01966 94 100 HBA1;HBA2;HBZ Hemoglobin subunit alpha;Hemoglobin subunit zeta no no 2 0.015382 85.306 By MS/MS By MS/MS By MS/MS 1 2 2 0.0084249 0.0067351 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0084249 0.0067351 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62701000 62419000 281810 0 0 0 0 0 0 11540000 11540000 0 29755000 29474000 281810 21405000 21405000 0 0 0 0 + 35291 738;380 37084 185854;185855;185856;185857;185858 188607;188608;188609;188610;188611;188612 188608 6 VDQALHTQTDADPAEEYAR ANTGLFNLRQIVLAKVDQALHTQTDADPAE LHTQTDADPAEEYARLCQEILGVPATPGTN K V D A R L 4 1 0 3 0 2 2 0 1 0 1 0 0 0 1 0 2 0 1 1 0 0 19 0 2128.9661 P52888;K7EP46;K7EIK4;K7EL32;K7EL02 P52888 560 578 THOP1 Thimet oligopeptidase yes no 3 8.4408E-14 105.79 By MS/MS By MS/MS 1 1 0.85075 0.76939 1.9484 2 Median 0.82498 0.78006 NaN 1 0 Median 0.87732 0.75886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37674000 20096000 17578000 31876000 17194000 14682000 5797800 2901800 2896000 0 0 0 0 0 0 0 0 0 0 0 0 35292 2460 37085 185859;185860 188613;188614;188615;188616 188614 4 VDQETLTEMVKPSIDYVR GMAGIYYMLMQPAAKVDQETLTEMVKPSID ETLTEMVKPSIDYVRHKKFRSGNYPSSLSN K V D V R H 0 1 0 2 0 1 2 0 0 1 1 1 1 0 1 1 2 0 1 3 0 0 18 1 2122.0616 Q9NS86 Q9NS86 280 297 LANCL2 LanC-like protein 2 yes yes 3 0.027033 15.422 By matching By MS/MS 1 2 0.84851 0.83004 17.258 3 Median NaN NaN NaN 0 0 Median 0.84851 0.79166 NaN 1 0 Median 0.88744 0.95116 19.264 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7557300 5117600 2439700 0 0 0 649380 352620 296760 6907900 4765000 2142900 0 0 0 0 0 0 0 0 0 35293 4098 37086 185861;185862;185863 188617 188617 1 VDQIIMAKPAGGPKPPSGK WAIKLATNAAVTVLRVDQIIMAKPAGGPKP IMAKPAGGPKPPSGKKDWDDDQND______ R V D G K K 2 0 0 1 0 1 0 3 0 2 0 3 1 0 4 1 0 0 0 1 0 0 19 2 1890.0397 P50990;H7C2U0 P50990 521 539 CCT8 T-complex protein 1 subunit theta yes no 3;4 1.1682E-06 51.566 By MS/MS 4 0.64859 0.64618 11.992 4 Median 0.64859 0.64618 11.992 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31204000 19038000 12166000 31204000 19038000 12166000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35294 2423 37087 185864;185865;185866;185867 188618;188619;188620;188621;188622 188620 5 VDQIQEIVTGNPTVIK LRLFKTALQEEIKSKVDQIQEIVTGNPTVI DQIQEIVTGNPTVIKMVVSFNRGARGQNAL K V D I K M 0 0 1 1 0 2 1 1 0 3 0 1 0 0 1 0 2 0 0 3 0 0 16 0 1752.9622 P46940;A0A0J9YXZ5;H0YLE8 P46940 1038 1053 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2;3 1.3744E-07 97.551 By MS/MS By MS/MS By MS/MS 5 4 1 0.84971 0.8035 15.506 10 Median 0.86068 0.85473 17.663 5 0 Median 0.81926 0.73208 10.496 4 0 Median 0.87913 0.97952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71573000 36925000 34648000 59778000 30924000 28854000 7464000 4069800 3394300 4331200 1931600 2399600 0 0 0 0 0 0 0 0 0 35295 2350 37088 185868;185869;185870;185871;185872;185873;185874;185875;185876;185877 188623;188624;188625;188626;188627;188628;188629;188630;188631;188632;188633 188626 11 VDQLNLER ILNYISRKEFEPLLRVDQLNLEREKHKVFL EFEPLLRVDQLNLEREKHKVFLRFSEEEIS R V D E R E 0 1 1 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 985.51926 O15357;A0A0A0MTP6 O15357 634 641 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.04634 59.35 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35296 1539 37089 185878 188634 188634 1 VDQLTAQLADLAAR MMGPYRQDLLAKCDRVDQLTAQLADLAARG RVDQLTAQLADLAARGEGESPQARALASQL R V D A R G 4 1 0 2 0 2 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 14 0 1483.7995 P18206 P18206 548 561 VCL Vinculin yes yes 2 0.00010931 82.171 By MS/MS By MS/MS 1 2 0.97955 0.88956 5.2036 3 Median 0.91992 0.90481 NaN 1 0 Median 0.97974 0.8545 5.6864 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12130000 6026000 6103500 2340200 1238700 1101500 9789400 4787300 5002000 0 0 0 0 0 0 0 0 0 0 0 0 35297 2057 37090 185879;185880;185881 188635;188636;188637;188638 188636 4 VDQSAVGFEYQGK SVRGFGGKFGVQMDRVDQSAVGFEYQGKTE DRVDQSAVGFEYQGKTEKHASQKDYSSGFG R V D G K T 1 0 0 1 0 2 1 2 0 0 0 1 0 1 0 1 0 0 1 2 0 0 13 0 1426.6729 Q14247 Q14247 132 144 CTTN Src substrate cortactin yes yes 2 2.6176E-05 93.258 By MS/MS By MS/MS By matching 4 2 1 1.6731 1.5617 63.477 7 Median 1.709 1.5713 38.942 4 2 Median 2.3932 2.0344 129.6 2 1 Median 1.044 1.0689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75873000 24183000 51690000 48121000 15484000 32637000 18829000 4483000 14346000 8923200 4216100 4707100 0 0 0 0 0 0 0 0 0 35298 2868 37091 185882;185883;185884;185885;185886;185887;185888 188639;188640;188641;188642;188643;188644;188645 188640 7 VDQSILTGESVSVIK PADIRLTSIKSTTLRVDQSILTGESVSVIK VDQSILTGESVSVIKHTDPVPDPRAVNQDK R V D I K H 0 0 0 1 0 1 1 1 0 2 1 1 0 0 0 3 1 0 0 3 0 0 15 0 1573.8563 P16615;O14983 P16615 175 189 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 1.057E-09 106.49 By MS/MS By MS/MS By MS/MS 4 4 2 1.2233 1.1377 9.4361 10 Median 1.185 1.1423 4.3072 4 0 Median 1.2512 1.0833 3.352 4 0 Median 1.2714 1.3568 5.9937 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93290000 41466000 51824000 67155000 29808000 37347000 20802000 9436400 11366000 5333400 2221600 3111800 0 0 0 0 0 0 0 0 0 35299 2031 37092 185889;185890;185891;185892;185893;185894;185895;185896;185897;185898 188646;188647;188648;188649;188650;188651;188652;188653;188654;188655 188648 10 VDQSLHTNTSLDAASEYAK VNTGLLTLRQIVLSKVDQSLHTNTSLDAAS LHTNTSLDAASEYAKYCSEILGVAATPGTN K V D A K Y 3 0 1 2 0 1 1 0 1 0 2 1 0 0 0 3 2 0 1 1 0 0 19 0 2048.9651 Q9BYT8;E9PCB6;H0YAK4;H0YAF7 Q9BYT8 584 602 NLN Neurolysin, mitochondrial yes no 3 2.3279E-05 45.237 By MS/MS By matching 1 1 1.2876 1.1576 2.3255 2 Median 1.2516 1.1387 NaN 1 0 Median 1.3246 1.1767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12028000 4984700 7042800 10479000 4408500 6070700 1548300 576160 972160 0 0 0 0 0 0 0 0 0 0 0 0 35300 3895 37093 185899;185900 188656;188657 188657 2 VDQVQDIVTGNPTVIK LKLFKTALEEEIKSKVDQVQDIVTGNPTVI DQVQDIVTGNPTVIKMVVSFNRGARGQNTL K V D I K M 0 0 1 2 0 2 0 1 0 2 0 1 0 0 1 0 2 0 0 4 0 0 16 0 1724.9309 E7EWC2;F5H7S7;Q13576 E7EWC2 901 916 IQGAP2 Ras GTPase-activating-like protein IQGAP2 yes no 2 6.1853E-10 104.87 By MS/MS 1 0.78216 0.75473 NaN 1 Median 0.78216 0.75473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7491800 3933900 3557900 7491800 3933900 3557900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35301 901 37094 185901 188658;188659 188658 2 VDREQLVQK ______________________________ ______________________________ M V D Q K A 0 1 0 1 0 2 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1113.6142 P61981 P61981 2 10 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 0.00019342 131.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 1.1648 1.093 10.3 6 Median 1.2159 1.2383 15.154 2 0 Median 1.1705 1.0738 NaN 1 0 Median 0.99483 1.0591 NaN 1 0 Median 1.2051 1.0668 NaN 1 0 Median 1.1591 1.2049 NaN 1 0 Median NaN NaN NaN 0 0 Median 199510000 95002000 104510000 76748000 36376000 40373000 29468000 13430000 16038000 69902000 35024000 34878000 20502000 8762900 11739000 2892300 1409400 1482800 0 0 0 35302 2566 37095 185902;185903;185904;185905;185906;185907 188660;188661;188662;188663;188664;188665;188666;188667;188668 188666 9 VDSAATSGYEIGNPPDYR FRKLVTDQNISENWRVDSAATSGYEIGNPP AATSGYEIGNPPDYRGQSCMKRHGIPMSHV R V D Y R G 2 1 1 2 0 0 1 2 0 1 0 0 0 0 2 2 1 0 2 1 0 0 18 0 1910.8646 P24666;G5E9R5 P24666 42 59 ACP1 Low molecular weight phosphotyrosine protein phosphatase yes no 2;3 3.5529E-109 275.35 By MS/MS By MS/MS By MS/MS By matching 3 1 2 1 0.80636 0.7815 13.917 7 Median 0.79948 0.7815 21.709 3 1 Median 0.90595 0.7508 NaN 1 0 Median 0.79434 0.78333 1.7645 2 0 Median 0.95822 0.79113 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 102010000 55650000 46358000 73047000 40223000 32824000 13274000 6807800 6466300 14716000 8148100 6568300 970430 470560 499860 0 0 0 0 0 0 35303 2125 37096 185908;185909;185910;185911;185912;185913;185914 188669;188670;188671;188672;188673;188674;188675;188676;188677;188678;188679;188680;188681 188671 13 VDSANALANGLIAGGHAAR FREFSRDTSTIGQERVDSANALANGLIAGG NALANGLIAGGHAARATVAEWKDSLNEAWA R V D A R A 6 1 2 1 0 0 0 3 1 1 2 0 0 0 0 1 0 0 0 1 0 0 19 0 1776.9231 O15020 O15020 1751 1769 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.0029725 48.314 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35304 1512 37097 185915 188682 188682 1 VDSGYRVHEELR SKRRKLVAIVDPHIKVDSGYRVHEELRNLG HIKVDSGYRVHEELRNLGLYVKTRDGSDYE K V D L R N 0 2 0 1 0 0 2 1 1 0 1 0 0 0 0 1 0 0 1 2 0 0 12 1 1458.7215 E9PKU7;Q14697;F5H6X6 Q14697 473 484 GANAB Neutral alpha-glucosidase AB no no 3 0.0038975 36.284 By MS/MS By matching 1 1 0.972 1.0061 16.852 2 Median 1.0202 1.1334 NaN 1 0 Median 0.92612 0.89307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7297700 3185300 4112400 3880500 1817000 2063600 3417200 1368300 2048900 0 0 0 0 0 0 0 0 0 0 0 0 35305 2896;951 37098 185916;185917 188683 188683 1 VDSLIPWIK SATEVDSRWQEYQSRVDSLIPWIKQHTILM QEYQSRVDSLIPWIKQHTILMSDKTFPQNP R V D I K Q 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 1 0 1 0 1 0 0 9 0 1069.6172 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 318 326 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.014552 44.395 By MS/MS By MS/MS 1 1 0.81082 0.84403 2.3027 2 Median 0.83623 0.8304 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78619 0.85789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6675900 3725700 2950200 4273600 2400900 1872700 0 0 0 2402300 1324800 1077500 0 0 0 0 0 0 0 0 0 35306 1220 37099 185918;185919 188684;188685;188686 188685 3 VDSLLENLEK DLQAIKKELTQIKQKVDSLLENLEKIEKEQ QIKQKVDSLLENLEKIEKEQSKQAVEMKND K V D E K I 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1158.6132 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1 B2R5W2 194 203 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 0.0003908 90.15 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 3 1.0405 0.95121 11.445 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87524 0.84257 11.208 3 1 Median 1.142 0.96602 5.0119 2 0 Median 0.93376 1.0002 14.306 4 0 Median 1.1736 0.968 6.304 3 0 Median 94975000 49011000 45964000 0 0 0 0 0 0 25956000 12800000 13156000 4688900 2293200 2395700 49320000 26641000 22678000 15010000 7276800 7733500 35307 582 37100 185920;185921;185922;185923;185924;185925;185926;185927;185928;185929;185930;185931 188687;188688;188689;188690;188691;188692;188693;188694;188695 188691 9 VDSLLENLEKIEKEQSK DLQAIKKELTQIKQKVDSLLENLEKIEKEQ SLLENLEKIEKEQSKQAVEMKNDKSEEEQS K V D S K Q 0 0 1 1 0 1 4 0 0 1 3 3 0 0 0 2 0 0 0 1 0 0 17 2 2001.063 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;B2RXH8;O60812;A0A0G2JNQ3 B2R5W2 194 210 HNRNPC;HNRNPCL2;HNRNPCL1 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1 yes no 3 3.2534E-05 49.559 By MS/MS 3 1.0903 1.2322 14.595 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0903 1.2322 14.595 3 0 Median NaN NaN NaN 0 0 Median 8073700 3649700 4424100 0 0 0 0 0 0 0 0 0 0 0 0 8073700 3649700 4424100 0 0 0 35308 582 37101 185932;185933;185934 188696 188696 1 VDSLLHGTFSAK PKSFLSGLYEFPLNKVDSLLHGTFSAKMLS LNKVDSLLHGTFSAKMLSSEPKDSALVEES K V D A K M 1 0 0 1 0 0 0 1 1 0 2 1 0 1 0 2 1 0 0 1 0 0 12 0 1273.6667 Q9UJA5 Q9UJA5 262 273 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.0045381 43.308 By MS/MS 1 1.6692 1.5913 NaN 1 Median 1.6692 1.5913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6285500 2394100 3891400 6285500 2394100 3891400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35309 4294 37102 185935 188697 188697 1 VDSPTVNTTLR SAPYGEYGSWYKACKVDSPTVNTTLRSLGA KACKVDSPTVNTTLRSLGALYRRQGKLEAA K V D L R S 0 1 1 1 0 0 0 0 0 0 1 0 0 0 1 1 3 0 0 2 0 0 11 0 1201.6303 Q9H0B6;A8MZ87 Q9H0B6 443 453 KLC2 Kinesin light chain 2 yes no 2 0.00019593 75.294 By MS/MS 1 0.81208 0.70281 NaN 1 Median NaN NaN NaN 0 0 Median 0.81208 0.70281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5304500 2823500 2481100 0 0 0 5304500 2823500 2481100 0 0 0 0 0 0 0 0 0 0 0 0 35310 3922 37103 185936 188698 188698 1 VDSPTVTTTLK GTSFGEYGGWYKACKVDSPTVTTTLKNLGA KACKVDSPTVTTTLKNLGALYRRQGKFEAA K V D L K N 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 4 0 0 2 0 0 11 0 1160.6289 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866;H0YJU9;H0YJL0;H0YJT3;H0YG16 G5E9S8 456 466 KLC1 Kinesin light chain 1 yes no 2 0.0031943 50.292 By MS/MS 1 1.3405 1.1548 NaN 1 Median NaN NaN NaN 0 0 Median 1.3405 1.1548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2755700 1177500 1578200 0 0 0 2755700 1177500 1578200 0 0 0 0 0 0 0 0 0 0 0 0 35311 896 37104 185937 188699 188699 1 VDSVPDVSPAPSPAGIPHGSQTIGNHFQR QMYYQQQPVSTSVVRVDSVPDVSPAPSPAG GIPHGSQTIGNHFQRTPVANQSSNLTATQM R V D Q R T 2 1 1 2 0 2 0 3 2 2 0 0 0 1 5 4 1 0 0 3 0 0 29 0 2966.4635 Q68CP9;F8WCU9;F8W108 Q68CP9 624 652 ARID2 AT-rich interactive domain-containing protein 2 yes no 4 2.9307E-26 89.197 By MS/MS 2 0.60933 0.6671 77.453 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60933 0.6671 77.453 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39771000 23212000 16559000 0 0 0 0 0 0 39771000 23212000 16559000 0 0 0 0 0 0 0 0 0 35312 3122 37105 185938;185939 188700;188701 188700 2 VDTEDIEK SLERAQNLNPMVDVKVDTEDIEKKPESFFT NPMVDVKVDTEDIEKKPESFFTQFDAVCLT K V D E K K 0 0 0 2 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 8 0 947.44476 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0QX65;A0A590UKA0;M0QYP2 Q9UBE0 110 117 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed no no 2 0.0085504 62.546 By MS/MS By matching 1 1 0.9404 0.84417 2.7464 2 Median 0.92107 0.86073 NaN 1 0 Median 0.96012 0.82794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6342300 3212700 3129700 3854000 1917500 1936500 2488300 1295100 1193200 0 0 0 0 0 0 0 0 0 0 0 0 35313 4237 37106 185940;185941 188702;188703 188702 2 VDTILEFSQNMNTK EVLTHLKEHPDAWTRVDTILEFSQNMNTKY RVDTILEFSQNMNTKYYGLQILENVIKTRW R V D T K Y 0 0 2 1 0 1 1 0 0 1 1 1 1 1 0 1 2 0 0 1 0 0 14 0 1638.7923 O14980;C9JKM9;C9J673;C9IZS4;C9JQ02;C9JV99;H7BZC5;F8WF71 O14980 63 76 XPO1 Exportin-1 yes no 2 3.7661E-20 152.54 By MS/MS 2 1.0079 0.97389 0.27719 2 Median 1.0079 0.97389 0.27719 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28719000 14348000 14372000 28719000 14348000 14372000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35314 1510 37107 185942;185943 188704;188705 188705 2 VDTLPYVPEPIK ANLPSAVTSDQKSQKVDTLPYVPEPIKVAI SQKVDTLPYVPEPIKVAIAENLLDVIKDTR K V D I K V 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 1 0 1 2 0 0 12 0 1369.7493 Q8WYP5 Q8WYP5 1654 1665 AHCTF1 Protein ELYS yes yes 2 0.00063919 62.823 By MS/MS By matching 1 2 0.59788 0.62182 14.868 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57189 0.62182 NaN 1 0 Median 0.68221 0.62542 21.022 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3154700 2128700 1026000 0 0 0 0 0 0 2887100 1977400 909690 267680 151340 116340 0 0 0 0 0 0 35315 3524 37108 185944;185945;185946 188706 188706 1 VDTNAPDLSLEGPEGK DVNLSKANVDISAPKVDTNAPDLSLEGPEG DTNAPDLSLEGPEGKLKGPKFKMPEMHFRA K V D G K L 1 0 1 2 0 0 2 2 0 0 2 1 0 0 2 1 1 0 0 1 0 0 16 0 1640.7893 Q09666 Q09666 1034 1049 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 9.7783E-26 151.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 2 1 0.8611 0.86247 24.227 12 Median 0.9216 0.9074 22.895 2 0 Median 1.1293 1.0001 35.126 2 0 Median 0.84486 0.92042 19.037 3 1 Median 0.81523 0.8124 16.011 3 0 Median 0.91202 0.95429 NaN 1 1 Median 0.68423 0.58641 NaN 1 0 Median 251920000 132780000 119130000 77035000 40855000 36180000 15694000 7941800 7752300 130150000 67891000 62264000 20071000 10653000 9417200 7541000 4576500 2964500 1422600 865450 557120 35316 2749 37109 185947;185948;185949;185950;185951;185952;185953;185954;185955;185956;185957;185958;185959 188707;188708;188709;188710;188711;188712;188713;188714;188715;188716;188717;188718;188719;188720;188721;188722;188723;188724 188711 18 VDVADQAQDKDRDDR ALSLNEESLGNRRIRVDVADQAQDKDRDDR VDVADQAQDKDRDDRSFGRDRNRDSDKTDT R V D D R S 2 2 0 6 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 15 2 1744.7976 E7EX17;P23588;F8W0K0;F8VSC7;F8VP89 E7EX17 168 182 EIF4B Eukaryotic translation initiation factor 4B yes no 3 0.00038205 42.317 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 5 1.0037 1.0788 18.443 16 Median 1.2668 1.3514 17.12 4 0 Median 1.0468 1.2281 19.96 5 0 Median 0.99689 1.1442 2.8632 2 0 Median 0.93902 0.96486 9.2101 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16109000 8122500 7986800 3848000 1839300 2008600 4841200 2668800 2172400 5025100 2471400 2553700 2395000 1142900 1252100 0 0 0 0 0 0 35317 904 37110 185960;185961;185962;185963;185964;185965;185966;185967;185968;185969;185970;185971;185972;185973;185974;185975 188725;188726;188727;188728;188729;188730;188731 188728 7 VDVAVNCAGIAVASK DVQTALALAKGKFGRVDVAVNCAGIAVASK VDVAVNCAGIAVASKTYNLKKGQTHTLEDF R V D S K T 4 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 0 4 0 0 15 0 1472.7657 Q99714;Q5H928 Q99714 85 99 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes no 2 3.2777E-05 84.718 By MS/MS By MS/MS 1 1 1.2816 1.1337 4.9442 2 Median 1.2593 1.174 NaN 1 0 Median 1.3043 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16074000 6869000 9205400 9688100 4410400 5277700 6386300 2458600 3927700 0 0 0 0 0 0 0 0 0 0 0 0 35318 3764 37111 185976;185977 188732;188733;188734;188735 188735 4 VDVDIPDVNIEGPDAK DVSLPKADIDVSGPKVDVDIPDVNIEGPDA DVDIPDVNIEGPDAKLKGPKFKMPEINIKA K V D A K L 1 0 1 4 0 0 1 1 0 2 0 1 0 0 2 0 0 0 0 3 0 0 16 0 1694.8363 Q09666 Q09666 4816 4831 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 1.1198E-09 124.12 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.88211 0.82231 9.6558 6 Median 0.72402 0.72762 NaN 1 0 Median 0.90349 0.80425 1.3796 2 1 Median 0.8545 0.92718 5.2269 2 0 Median 0.91889 0.83261 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 236230000 125030000 111200000 95132000 52763000 42369000 31426000 15516000 15910000 107820000 55752000 52071000 1850200 998030 852130 0 0 0 0 0 0 35319 2749 37112 185978;185979;185980;185981;185982;185983 188736;188737;188738;188739;188740;188741;188742 188737 7 VDVDVPDVNIEGPDAK DVNLPKADLDVSGPKVDVDVPDVNIEGPDA DVDVPDVNIEGPDAKLKGPKFKMPEMNIKA K V D A K L 1 0 1 4 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 4 0 0 16 0 1680.8206 Q09666 Q09666 3186 3201 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 2.472E-10 116.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 3 2 0.85678 0.84628 15.197 12 Median 0.77344 0.7775 NaN 1 0 Median 0.9454 0.83797 11.66 2 0 Median 0.90895 0.97494 19.412 4 0 Median 0.85894 0.86072 12.66 3 0 Plateau 0.78899 0.82578 11.309 2 2 Median NaN NaN NaN 0 0 Median 284300000 149960000 134340000 120850000 65837000 55013000 17382000 8659900 8722500 111830000 58263000 53568000 20545000 10486000 10059000 13696000 6714400 6981400 0 0 0 35320 2749 37113 185984;185985;185986;185987;185988;185989;185990;185991;185992;185993;185994;185995 188743;188744;188745;188746;188747;188748;188749;188750;188751;188752;188753;188754;188755;188756;188757;188758;188759;188760;188761;188762;188763 188744 21 VDVEALENSAGATYIR ALSKHLPSSDSMSLKVDVEALENSAGATYI DVEALENSAGATYIRKKGGKVTGDSQPKEQ K V D I R K 3 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1706.8475 O76094 O76094 516 531 SRP72 Signal recognition particle subunit SRP72 yes yes 2 5.8317E-10 105.17 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1264 1.1073 35.889 4 Median 1.2216 1.1607 NaN 1 0 Median 1.3815 1.2014 NaN 1 0 Median 1.0386 1.0563 NaN 1 0 Median 0.66419 0.5597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20843000 9381300 11461000 6651000 2793200 3857800 916630 398460 518160 12735000 5886400 6848400 540290 303240 237050 0 0 0 0 0 0 35321 1721 37114 185996;185997;185998;185999 188764;188765;188766 188764 3 VDVECPDVNIEGPEGK DVNLPKADIDVSGPKVDVECPDVNIEGPEG DVECPDVNIEGPEGKWKSPKFKMPEMHFKT K V D G K W 0 0 1 2 1 0 3 2 0 1 0 1 0 0 2 0 0 0 0 3 0 0 16 0 1755.7985 Q09666 Q09666 2802 2817 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 2.1098E-10 126.76 By MS/MS By MS/MS By MS/MS 1 1 1 0.82427 0.81268 13.676 3 Median NaN NaN NaN 0 0 Median 0.77354 0.67472 NaN 1 0 Median 0.82427 0.88091 NaN 1 0 Median 0.84359 0.81268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19977000 10552000 9424700 0 0 0 4811700 2627900 2183700 12935000 6892200 6043200 2229400 1031600 1197700 0 0 0 0 0 0 35322 2749 37115 186000;186001;186002 188767;188768;188769;188770;188771;188772 188770 6 VDVEGPDVNIEGPEGK DVNLPKADVDVSGPKVDVEGPDVNIEGPEG DVEGPDVNIEGPEGKLKGPKFKMPEMNIKA K V D G K L 0 0 1 2 0 0 3 3 0 1 0 1 0 0 2 0 0 0 0 3 0 0 16 0 1652.7893 Q09666 Q09666 2930 2945 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 9.6987E-10 149.23 By MS/MS By MS/MS By MS/MS 2 2 2 0.82382 0.78261 35.667 6 Median 0.68091 0.70245 4.3916 2 0 Median 1.4489 1.2855 46.646 2 0 Median NaN NaN NaN 0 0 Median 0.82382 0.78261 3.3796 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95943000 50214000 45729000 53298000 30076000 23222000 25540000 10601000 14939000 0 0 0 17104000 9537100 7567400 0 0 0 0 0 0 35323 2749 37116 186003;186004;186005;186006;186007;186008 188773;188774;188775;188776;188777;188778;188779 188776 7 VDVEVPDVSLEGPEGK DVNLPKADIDVSGPKVDVEVPDVSLEGPEG DVEVPDVSLEGPEGKLKGPKFKMPEMHFKA K V D G K L 0 0 0 2 0 0 3 2 0 0 1 1 0 0 2 1 0 0 0 4 0 0 16 0 1667.8254 Q09666 Q09666 1290 1305 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 1.8873E-10 142.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 2 0.86658 0.84368 14.361 11 Median 0.78625 0.77534 0.75236 2 0 Median 1.1405 1.0142 26.037 2 0 Median 0.81469 0.8841 2.2526 2 0 Median 0.87924 0.83401 4.7852 2 0 Median 0.87296 0.91341 NaN 1 0 Median 0.87867 0.74556 11.379 2 0 Median 360660000 191990000 168670000 158320000 87958000 70365000 52564000 26125000 26439000 127270000 65452000 61818000 14097000 7454100 6643200 7420100 4485200 2935000 990500 516460 474040 35324 2749 37117 186009;186010;186011;186012;186013;186014;186015;186016;186017;186018;186019 188780;188781;188782;188783;188784;188785;188786;188787;188788;188789;188790;188791;188792;188793;188794;188795;188796;188797;188798;188799;188800;188801;188802;188803;188804;188805 188793 26 VDVFTNLGYR APECKVLTAAGNSCRVDVFTNLGYRAFSLS GNSCRVDVFTNLGYRAFSLSF_________ R V D Y R A 0 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 2 0 0 10 0 1182.6033 Q86W42 Q86W42 326 335 THOC6 THO complex subunit 6 homolog yes yes 2 0.00063775 112.84 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 1 3 1 2 1.1303 1.0048 16.338 10 Median 1.2615 1.2603 NaN 1 0 Median 1.1256 0.98329 2.908 2 0 Median 0.94335 0.91525 NaN 1 0 Median 1.156 1.0058 16.337 3 0 Plateau 1.0633 1.1438 NaN 1 0 Median 1.3871 1.1839 7.6097 2 0 Median 50422000 25275000 25147000 2944300 1447500 1496900 922620 463460 459160 40732000 20542000 20189000 2945900 1401200 1544700 2332300 1134900 1197400 544900 285210 259690 35325 3290 37118 186020;186021;186022;186023;186024;186025;186026;186027;186028;186029 188806;188807;188808;188809 188806 4 VDVGGSEPASLSYLSFEGATK HVIGIVTAKSGDIFKVDVGGSEPASLSYLS EPASLSYLSFEGATKRNRPNVQVGDLIYGQ K V D T K R 2 0 0 1 0 0 2 3 0 0 2 1 0 1 1 4 1 0 1 2 0 0 21 0 2113.0215 Q9NQT5 Q9NQT5 131 151 EXOSC3 Exosome complex component RRP40 yes yes 2 1.3219E-08 57.679 By MS/MS 1 0.88673 0.84979 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88673 0.84979 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5025000 2552600 2472400 0 0 0 0 0 0 5025000 2552600 2472400 0 0 0 0 0 0 0 0 0 35326 4067 37119 186030 188810;188811 188811 2 VDVGGSEPASLSYLSFEGATKR HVIGIVTAKSGDIFKVDVGGSEPASLSYLS PASLSYLSFEGATKRNRPNVQVGDLIYGQF K V D K R N 2 1 0 1 0 0 2 3 0 0 2 1 0 1 1 4 1 0 1 2 0 0 22 1 2269.1226 Q9NQT5 Q9NQT5 131 152 EXOSC3 Exosome complex component RRP40 yes yes 3 2.8882E-12 63.184 By MS/MS By matching 1 1 0.59812 0.64178 30.544 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.729 0.7965 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.49073 0.51712 NaN 1 0 Median NaN NaN NaN 0 0 Median 3996100 2283800 1712200 0 0 0 0 0 0 2577100 1271900 1305200 0 0 0 1419000 1012000 407030 0 0 0 35327 4067 37120 186031;186032 188812;188813 188813 2 VDVGKDQEFTVK SLDLSKIKVSGLGEKVDVGKDQEFTVKSKG GEKVDVGKDQEFTVKSKGAGGQGKVASKIV K V D V K S 0 0 0 2 0 1 1 1 0 0 0 2 0 1 0 0 1 0 0 3 0 0 12 1 1363.6983 P21333;Q60FE5;A0A087WWY3 P21333 983 994 FLNA Filamin-A no no 2;3 1.6684E-29 207.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 3 1 0.95391 0.97315 16.844 16 Median 1.0991 1.0965 14.612 5 0 Median 0.96131 0.92278 9.7688 5 0 Median 0.85291 0.98837 5.3293 2 0 Median 0.90194 0.91632 9.4091 3 0 Median 0.61323 0.68829 NaN 1 0 Median NaN NaN NaN 0 0 Median 777950000 385060000 392890000 209360000 91872000 117490000 516410000 265430000 250980000 31923000 16690000 15233000 19455000 10578000 8876300 798700 491320 307380 0 0 0 35328 2088;3120 37121 186033;186034;186035;186036;186037;186038;186039;186040;186041;186042;186043;186044;186045;186046;186047;186048 188814;188815;188816;188817;188818;188819;188820;188821;188822;188823;188824;188825;188826;188827;188828;188829;188830;188831;188832;188833;188834;188835 188824 22 VDVGNPEESLEMPLR VESITSLEAIIIPYRVDVGNPEESLEMPLR VDVGNPEESLEMPLRKQEELESTVAHIQDL R V D L R K 0 1 1 1 0 0 3 1 0 0 2 0 1 0 2 1 0 0 0 2 0 0 15 0 1683.8138 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3284 3298 SYNE2 Nesprin-2 yes no 2 0.00038801 59.542 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35329 3521 37122 186049 188836 188836 1 VDVGNPEESLEMPLRK VESITSLEAIIIPYRVDVGNPEESLEMPLR DVGNPEESLEMPLRKQEELESTVAHIQDLT R V D R K Q 0 1 1 1 0 0 3 1 0 0 2 1 1 0 2 1 0 0 0 2 0 0 16 1 1811.9087 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3284 3299 SYNE2 Nesprin-2 yes no 3 0.03075 24.538 By MS/MS 1 0.52126 0.60321 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52126 0.60321 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4185100 2718800 1466300 0 0 0 0 0 0 4185100 2718800 1466300 0 0 0 0 0 0 0 0 0 35330 3521 37123 186050 188837 188837 1 VDVGQQPLR VRGANTHLSTFSFTKVDVGQQPLRINGVKV TFSFTKVDVGQQPLRINGVKVYTENVDKRQ K V D L R I 0 1 0 1 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 1010.5509 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8 A0A499FIX8 164 172 ESYT2 Extended synaptotagmin-2 yes no 2 0.031748 48.561 By MS/MS 1 0.8294 0.73048 NaN 1 Median NaN NaN NaN 0 0 Median 0.8294 0.73048 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1407900 735300 672630 0 0 0 1407900 735300 672630 0 0 0 0 0 0 0 0 0 0 0 0 35331 72 37124 186051 188838 188838 1 VDVIQEPGLSGR AFAKNGEILQISVGKVDVIQEPGLSGRFFV VGKVDVIQEPGLSGRFFVTTLPAFFHAKDG K V D G R F 0 1 0 1 0 1 1 2 0 1 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1268.6725 Q9H1E5 Q9H1E5 91 102 TMX4 Thioredoxin-related transmembrane protein 4 yes yes 2 0.00055693 93.111 By MS/MS 1 0.65731 0.65436 NaN 1 Median 0.65731 0.65436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9769800 6831100 2938800 9769800 6831100 2938800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35332 3936 37125 186052 188839 188839 1 VDVNAPDVQAPDWHLK EGKLEVPDMNIRGPKVDVNAPDVQAPDWHL DVNAPDVQAPDWHLKMPKMKMPKFSMPGFK K V D L K M 2 0 1 3 0 1 0 0 1 0 1 1 0 0 2 0 0 1 0 3 0 0 16 0 1802.8951 Q09666 Q09666 2494 2509 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.6708E-08 126.83 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 3 0.84853 0.87753 23.777 9 Median 0.89566 0.89932 4.7689 3 0 Median 1.9698 1.7341 NaN 1 0 Median 0.82687 0.88067 0.50657 2 0 Median 0.88166 0.85989 4.3571 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 256990000 135380000 121610000 126490000 68167000 58325000 8818200 3465800 5352400 113700000 59801000 53894000 7979900 3941600 4038300 0 0 0 0 0 0 35333 2749 37126 186053;186054;186055;186056;186057;186058;186059;186060;186061 188840;188841;188842;188843;188844;188845;188846;188847;188848;188849;188850;188851 188843 12 VDVSAPDVEAHGPEWNLK EGKVKVPEVDVRGPKVDVSAPDVEAHGPEW SAPDVEAHGPEWNLKMPKMKMPTFSTPGAK K V D L K M 2 0 1 2 0 0 2 1 1 0 1 1 0 0 2 1 0 1 0 3 0 0 18 0 1961.9483 Q09666 Q09666 610 627 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 7.0809E-49 168.82 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 1 1 0.74549 0.74414 70.325 9 Median 0.76408 0.76715 2.8337 2 1 Median 0.31693 0.27912 102.98 2 0 Median 0.79366 0.85259 10.225 2 0 Median 0.77119 0.74414 NaN 1 0 Median 0.19452 0.20436 NaN 1 0 Median 0.33761 0.28384 NaN 1 0 Median 170650000 94803000 75844000 95185000 52969000 42216000 11588000 6135500 5452500 57860000 31380000 26480000 2415500 1366000 1049500 3314800 2761100 553710 283660 191860 91795 35334 2749 37127 186062;186063;186064;186065;186066;186067;186068;186069;186070 188852;188853;188854;188855;188856;188857;188858;188859;188860 188854 9 VDVSAPDVEMQGPDWNLK DMTVPKLEGDLKGPKVDVSAPDVEMQGPDW SAPDVEMQGPDWNLKMPKIKMPKFSMPSLK K V D L K M 1 0 1 3 0 1 1 1 0 0 1 1 1 0 2 1 0 1 0 3 0 0 18 0 1998.9357 Q09666 Q09666 980 997 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 6.2749E-11 100.38 By MS/MS By matching By MS/MS By matching 3 1 2 3 0.84703 0.81642 10.38 9 Median 0.80682 0.80954 13.412 3 0 Median 0.85146 0.74684 NaN 1 0 Median 0.81624 0.8871 7.4506 2 0 Median 0.89053 0.82617 5.9961 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47063000 25101000 21961000 35857000 19111000 16746000 1645800 896650 749140 8427800 4524300 3903500 1132300 569000 563270 0 0 0 0 0 0 35335 2749 37128;37129 186071;186072;186073;186074;186075;186076;186077;186078;186079 188861;188862;188863;188864;188865;188866;188867 188865 1467 7 VDVTEQPGLSGR SFAEWGEDLEVNIAKVDVTEQPGLSGRFII IAKVDVTEQPGLSGRFIITALPTIYHCKDG K V D G R F 0 1 0 1 0 1 1 2 0 0 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1256.6361 Q9H3N1;G3V448 Q9H3N1 83 94 TMX1 Thioredoxin-related transmembrane protein 1 yes no 2 6.9442E-08 164.97 By MS/MS By MS/MS 1 4 0.9845 0.90294 36.684 5 Median 0.96481 0.90294 NaN 1 0 Median 1.0354 0.86835 42.355 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39474000 19872000 19601000 18506000 9853300 8652600 20968000 10019000 10949000 0 0 0 0 0 0 0 0 0 0 0 0 35336 3956 37130 186080;186081;186082;186083;186084 188868;188869;188870;188871 188870 4 VDWLTEK LTITQAVIFINTRRKVDWLTEKMHARDFTV IFINTRRKVDWLTEKMHARDFTVSAMHGDM K V D E K M 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 889.45453 P38919;I3L3H2;P60842;J3KT12;J3QS69;J3KSZ0;J3QL43;J3KTN0;J3QL52;Q14240;E7EQG2 P60842 285 291 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.012003 79.116 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 4 1.1881 1.0375 17.816 11 Median 1.1731 1.1055 0.66191 2 0 Median 1.0969 0.94584 NaN 1 0 Median 1.3105 1.3546 25.341 2 0 Median 1.056 0.94893 NaN 1 0 Median 1.5595 1.4896 NaN 1 0 Median 1.2202 1.0191 2.8562 4 0 Median 40491000 18803000 21688000 10163000 5046400 5116300 2717800 1300200 1417600 13721000 6252100 7469200 9467200 4499400 4967900 2871100 990240 1880900 1551200 714810 836430 35337 2278;2529;2867 37131 186085;186086;186087;186088;186089;186090;186091;186092;186093;186094;186095 188872;188873;188874;188875;188876 188872 5 VDWQENDFSKR TAGIPTLPWSGSGLRVDWQENDFSKRILNV SGLRVDWQENDFSKRILNVPQELYEKGYVK R V D K R I 0 1 1 2 0 1 1 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 11 1 1422.6528 Q13085 Q13085 267 277 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 3 0.023656 28.327 By MS/MS 1 1.208 1.2384 NaN 1 Median 1.208 1.2384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2926900 1539800 1387200 2926900 1539800 1387200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35338 2784 37132 186096 188877 188877 0 VDYKADEWLMK LKDKADFCIIHYAGKVDYKADEWLMKNMDP YAGKVDYKADEWLMKNMDPLNDNIATLLHQ K V D M K N 1 0 0 2 0 0 1 0 0 0 1 2 1 0 0 0 0 1 1 1 0 0 11 1 1396.6697 P35579;P35580 P35579 577 587 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.00085121 81.338 By MS/MS By MS/MS By MS/MS 4 1 1 1.2336 1.159 15.86 5 Median 1.2336 1.159 4.9822 3 2 Median NaN NaN NaN 0 0 Median 1.344 1.5527 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95455 1.0253 NaN 1 0 Median NaN NaN NaN 0 0 Median 139930000 61144000 78781000 127300000 54602000 72699000 0 0 0 6416400 3212000 3204300 0 0 0 6208500 3330200 2878300 0 0 0 35339 2244;2245 37133;37134 186097;186098;186099;186100;186101;186102 188878;188879;188880;188881;188882;188883;188884;188885;188886 188878 1000 9 VDYSGGFEPFSVLR LGNSHQPEKPLVRLRVDYSGGFEPFSVLRF RVDYSGGFEPFSVLRFSQKFVDRVANPKDI R V D L R F 0 1 0 1 0 0 1 2 0 0 1 0 0 2 1 2 0 0 1 2 0 0 14 0 1571.762 P49959;F8W7U8 P49959 367 380 MRE11A Double-strand break repair protein MRE11A yes no 2 0.00059314 66.262 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 4 3 1 0.93895 0.94452 22.24 10 Median 0.9681 0.96095 NaN 1 0 Median 0.88842 0.78257 NaN 1 0 Median 0.83481 0.86113 31.66 4 0 Median 1.1232 0.97736 3.4705 3 0 Median 1.0139 1.0218 NaN 1 0 Median NaN NaN NaN 0 0 Median 34389000 18203000 16186000 1319500 678300 641210 1402600 793860 608700 28126000 15089000 13037000 3104800 1448500 1656300 436000 192810 243200 0 0 0 35340 2407 37135 186103;186104;186105;186106;186107;186108;186109;186110;186111;186112 188887;188888;188889;188890;188891;188892;188893;188894;188895;188896 188891 10 VDYTLSSSLLQSVEEPMVHLR VCSLRMNRLAGVGWRVDYTLSSSLLQSVEE SSLLQSVEEPMVHLRLEVAAAPGTPAQPVA R V D L R L 0 1 0 1 0 1 2 0 1 0 4 0 1 0 1 4 1 0 1 3 0 0 21 0 2402.2152 A0A0B4J287;H3BM91;Q9H0A8 A0A0B4J287 116 136 COMMD4 COMM domain-containing protein 4 yes no 3 3.7915E-07 48.656 By MS/MS 1 0.98457 0.77143 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98457 0.77143 NaN 1 0 Median 1602700 562090 1040700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1602700 562090 1040700 35341 217 37136 186113 188897 188897 1 VDYYEVLGVQR ______________________________ ______________________________ M V D Q R H 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 2 3 0 0 11 0 1339.6772 C9J2C4;A0A0J9YX62;O75190;C9JB42;C9JDR7;C9JDX6;F8WCZ4;C9J2P2;E9PH18;C9JN01 C9J2C4 2 12 DNAJB6 DnaJ homolog subfamily B member 6 yes no 2 6.105E-06 105.52 By MS/MS By MS/MS 2 2 1.5287 1.5335 13.074 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4707 1.4032 17.01 2 2 Median NaN NaN NaN 0 0 Median 1.5287 1.5335 NaN 1 1 Median NaN NaN NaN 0 0 Median 17006000 6879400 10127000 0 0 0 0 0 0 9161100 3529100 5632000 0 0 0 7845100 3350300 4494800 0 0 0 35342 291 37137 186114;186115;186116;186117 188898;188899;188900;188901 188901 4 VEAAEIVEGEDSAYSVR SSQDMTAQVTSPSGKVEAAEIVEGEDSAYS AAEIVEGEDSAYSVRFVPQEMGPHTVAVKY K V E V R F 3 1 0 1 0 0 4 1 0 1 0 0 0 0 0 2 0 0 1 3 0 0 17 0 1822.8585 Q14315 Q14315 2261 2277 FLNC Filamin-C yes yes 2;3 4.6245E-48 166.6 By MS/MS By MS/MS By MS/MS 4 3 3 1.2447 1.2058 29.452 9 Median 1.2809 1.2406 9.0268 4 3 Median 0.99676 0.80363 3.2178 3 0 Median 1.4863 1.6374 17.644 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124640000 54365000 70279000 100060000 43655000 56407000 14720000 7129800 7590300 9861700 3580500 6281200 0 0 0 0 0 0 0 0 0 35343 2871 37138 186118;186119;186120;186121;186122;186123;186124;186125;186126;186127 188902;188903;188904;188905;188906;188907;188908;188909;188910 188904 9 VEAALDSR EEVKNFITRENLEARVEAALDSRKNYNWAI RENLEARVEAALDSRKNYNWAITREGLVVR R V E S R K 2 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 859.43995 Q9BYN8 Q9BYN8 177 184 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 0.030362 38.962 By MS/MS By matching By matching 1 1 1 1.2408 1.0608 10.393 3 Median 0.96805 0.91033 NaN 1 0 Median 1.2408 1.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2778 1.1101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1825800 864990 960840 1186100 554870 631260 462470 243380 219080 0 0 0 177230 66734 110500 0 0 0 0 0 0 35344 3894 37139 186128;186129;186130 188911;188912 188911 2 VEAAQETVADYQQTIKK QLDMAGARVREAQKRVEAAQETVADYQQTI AAQETVADYQQTIKKYRQLTAHLQDVNREL R V E K K Y 3 0 0 1 0 3 2 0 0 1 0 2 0 0 0 0 2 0 1 2 0 0 17 1 1920.9793 E7EX90;Q14203;Q6AWB1 E7EX90 486 502 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 3 2.8028E-06 80.738 By MS/MS By matching 1 1 0.77476 0.69103 51.212 2 Median 1.0461 0.99258 NaN 1 0 Median 0.57382 0.48109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23952000 10610000 13343000 22221000 9811800 12409000 1731300 797970 933340 0 0 0 0 0 0 0 0 0 0 0 0 35345 906 37140 186131;186132 188913;188914 188914 2 VEADRPGK ______________________________ ______________________________ M V E G K L 1 1 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 8 1 870.45593 P38159;H3BT71;H3BR27;O75526;H3BNC1;Q96E39;A0A1B0GUK8 P38159 2 9 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 no no 2 0.002336 78.324 By MS/MS By MS/MS By matching 1 1 1 0.91208 0.92455 198.54 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77837 0.78796 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91208 0.92455 NaN 1 0 Median 0.03035 0.027476 NaN 1 0 Median 53010000 28172000 24838000 0 0 0 0 0 0 1565300 884310 681020 0 0 0 50566000 26475000 24090000 878940 812480 66466 35346 2273;3632 37141 186133;186134;186135 188915;188916;188917 188917 3 VEAEGQLQQLR VQTLRGEVADLELQRVEAEGQLQQLREVLR ELQRVEAEGQLQQLREVLRQRQEGEAAALN R V E L R E 1 1 0 0 0 3 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1269.6677 Q5TZA2 Q5TZA2 1806 1816 CROCC Rootletin yes yes 2 0.0089644 73.233 By MS/MS 1 2.4407 2.0297 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4407 2.0297 NaN 1 0 Median 2601100 766570 1834500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2601100 766570 1834500 35347 3107 37142 186136 188918 188918 0 VEAGDVIYIEANSGAVK LKLDPSIFESLQKERVEAGDVIYIEANSGA AGDVIYIEANSGAVKRQGRCDTYATEFDLE R V E V K R 3 0 1 1 0 0 2 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 17 0 1733.8836 Q9Y265;E7ETR0;H7C4I3 Q9Y265 185 201 RUVBL1 RuvB-like 1 yes no 2 6.1191E-06 83.617 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 1 1.1987 1.1062 15.264 6 Median 1.1922 1.1525 NaN 1 0 Median 1.2052 1.0618 NaN 1 0 Median 0.96611 0.94292 0.67891 2 0 Median 1.5817 1.4085 NaN 1 0 Median 1.2266 1.1763 NaN 1 0 Median NaN NaN NaN 0 0 Median 26743000 12881000 13863000 2111700 888110 1223600 767840 304550 463290 21834000 10617000 11217000 190100 77755 112340 1840000 993390 846570 0 0 0 35348 4375 37143 186137;186138;186139;186140;186141;186142 188919;188920;188921;188922;188923;188924;188925;188926 188923 8 VEAGDVIYIEANSGAVKR LKLDPSIFESLQKERVEAGDVIYIEANSGA GDVIYIEANSGAVKRQGRCDTYATEFDLEA R V E K R Q 3 1 1 1 0 0 2 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 18 1 1889.9847 Q9Y265;E7ETR0;H7C4I3 Q9Y265 185 202 RUVBL1 RuvB-like 1 yes no 3 4.8761E-07 82.349 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.86041 0.82529 21.566 4 Median 0.99822 0.99587 NaN 1 0 Median 0.7785 0.70724 NaN 1 0 Median 0.95095 0.96303 NaN 1 0 Median 0.67305 0.64969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14930000 8188000 6741600 7696500 4291100 3405400 277020 140650 136370 5859400 3247000 2612400 1096700 509300 587420 0 0 0 0 0 0 35349 4375 37144 186143;186144;186145;186146 188927;188928;188929;188930 188928 4 VEAIDVEEAKR IRLAEAHAKVRLSNKVEAIDVEEAKRLHRE LSNKVEAIDVEEAKRLHREALKQSATDPRT K V E K R L 2 1 0 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 2 0 0 11 1 1257.6565 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 703 713 MCM4 DNA replication licensing factor MCM4 yes no 3 0.0010545 48.004 By MS/MS By MS/MS 2 1 0.99715 0.94129 14.129 3 Median NaN NaN NaN 0 0 Median 1.0034 0.97613 5.1392 2 0 Median 0.67671 0.77055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5745900 2847700 2898200 0 0 0 4152900 1918800 2234100 1593100 928870 664180 0 0 0 0 0 0 0 0 0 35350 441 37145 186147;186148;186149 188931;188932;188933 188931 3 VEAKFINYVK AKMQASIEKGGSLPKVEAKFINYVKNCFRM GSLPKVEAKFINYVKNCFRMTDQEAIQDLW K V E V K N 1 0 1 0 0 0 1 0 0 1 0 2 0 1 0 0 0 0 1 2 0 0 10 1 1209.6758 P06748 P06748 264 273 NPM1 Nucleophosmin yes yes 2;3 0.0034379 99.136 By matching By MS/MS By matching By matching 2 2 3 1 1.1481 1.0999 30.537 8 Median NaN NaN NaN 0 0 Median 1.5635 1.4084 2.0616 2 0 Median 1.0244 1.0722 12.309 2 0 Median 1.1779 1.0343 41.627 3 0 Median 0.78542 0.82599 NaN 1 0 Median NaN NaN NaN 0 0 Median 16093000 7445300 8647600 0 0 0 1118100 393320 724810 11949000 5592700 6356000 2044500 957340 1087200 981410 501910 479500 0 0 0 35351 1877 37146 186150;186151;186152;186153;186154;186155;186156;186157 188934;188935;188936 188935 3 VEAKPEVQSQPPR SGIPPHVKAPVSQPRVEAKPEVQSQPPRVR PRVEAKPEVQSQPPRVREQRPRERPGFPPR R V E P R V 1 1 0 0 0 2 2 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 13 1 1463.7732 Q9UN86 Q9UN86 278 290 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 3 9.0066E-05 86.699 By MS/MS 1 0.48143 0.43932 NaN 1 Median NaN NaN NaN 0 0 Median 0.48143 0.43932 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8444000 5551100 2892900 0 0 0 8444000 5551100 2892900 0 0 0 0 0 0 0 0 0 0 0 0 35352 4341 37147 186158 188937 188937 1 VEALPEQVAPESR YTMYSMMNVGQTAEKVEALPEQVAPESRNR EKVEALPEQVAPESRNRIRVRQDLASLPAE K V E S R N 2 1 0 0 0 1 3 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 13 0 1423.7307 Q96RE7 Q96RE7 319 331 NACC1 Nucleus accumbens-associated protein 1 yes yes 2 1.3011E-06 133.81 By MS/MS By MS/MS By matching 1 1 2 1.1476 1.0046 20.029 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71396 0.71714 NaN 1 0 Median 1.1122 0.92935 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2243 1.0957 1.2605 2 0 Median 18966000 9876600 9089800 0 0 0 0 0 0 10283000 6085300 4197400 2375600 1029000 1346600 0 0 0 6308100 2762300 3545800 35353 3725 37148 186159;186160;186161;186162 188938;188939;188940;188941 188939 4 VEALQSGGGQER KGVGAIYIRRRPRVRVEALQSGGGQERGMR RVRVEALQSGGGQERGMRSGTVPTPLVVGL R V E E R G 1 1 0 0 0 2 2 3 0 0 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1229.6 Q9Y697 Q9Y697 278 289 NFS1 Cysteine desulfurase, mitochondrial yes yes 2 0.046454 44.318 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35354 4484 37149 186163 188942 188942 1 VEAMALKPDLVNVIK EVKSPPLNQPVSWCKVEAMALKPDLVNVIK VEAMALKPDLVNVIKDVSPPPLVVMAFSMK K V E I K D 2 0 1 1 0 0 1 0 0 1 2 2 1 0 1 0 0 0 0 3 0 0 15 1 1638.9379 A0A087WU64;A6NMQ1;P09884 A0A087WU64 515 529 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.031131 18.138 By MS/MS By matching By matching 2 3 1 0.97672 0.9475 11.525 6 Median 0.81613 0.84182 14.796 2 0 Median 1.0491 1.0161 9.2987 3 0 Median NaN NaN NaN 0 0 Median 1.0356 0.9605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15337000 7041100 8295500 11897000 5606300 6290600 3333400 1384000 1949400 0 0 0 106290 50767 55528 0 0 0 0 0 0 35355 26 37150 186164;186165;186166;186167;186168;186169 188943;188944 188943 2 VEAQHILASAPTDR RMAGAIAQGLIRAGKVEAQHILASAPTDRN KVEAQHILASAPTDRNLCHFQALGCRTTHS K V E D R N 3 1 0 1 0 1 1 0 1 1 1 0 0 0 1 1 1 0 0 1 0 0 14 0 1506.7791 A0A0A0MQS1;Q53H96 A0A0A0MQS1 45 58 PYCRL Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 3 yes no 2;3 0.0013518 63.473 By MS/MS By matching By matching 3 1 1 0.72916 0.65277 41.161 4 Median 0.65632 0.62077 14.123 2 1 Median 0.73467 0.62118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.718 1.3914 NaN 1 0 Median 23407000 12467000 10940000 15916000 9022600 6893600 4990500 2725100 2265500 0 0 0 0 0 0 0 0 0 2500500 719790 1780700 35356 146 37151 186170;186171;186172;186173;186174 188945;188946 188946 2 VEAQLQELQVK VLLQGKGDSEHKRKKVEAQLQELQVKFNEG KRKKVEAQLQELQVKFNEGERVRTELADKV K V E V K F 1 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1283.7085 P35579 P35579 1250 1260 MYH9 Myosin-9 yes yes 2 0.00015157 109.29 By MS/MS By MS/MS By MS/MS 1 2 1 1.4688 1.3001 25.696 4 Median 2.0664 1.9788 NaN 1 1 Median 1.4688 1.3001 2.2885 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2593 1.0789 NaN 1 0 Median 104550000 37271000 67281000 38041000 8965700 29075000 63185000 26875000 36310000 0 0 0 0 0 0 0 0 0 3325600 1429700 1895900 35357 2244 37152 186175;186176;186177;186178 188947;188948;188949;188950 188950 4 VEAQVYILSK GLVMVKPGSIKPHQKVEAQVYILSKEEGGR KPHQKVEAQVYILSKEEGGRHKPFVSHFMP K V E S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 2 0 0 10 0 1148.6441 P49411 P49411 352 361 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00063896 72.643 By MS/MS 1 1.7604 1.5073 NaN 1 Median NaN NaN NaN 0 0 Median 1.7604 1.5073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4917800 1836300 3081600 0 0 0 4917800 1836300 3081600 0 0 0 0 0 0 0 0 0 0 0 0 35358 2382 37153 186179 188951;188952 188952 2 VEATVIEK FTLLGKPLLGKDLVRVEATVIEKTESWPRI LGKDLVRVEATVIEKTESWPRIIMRFRKRK R V E E K T 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 8 0 887.4964 Q7Z2W9;H3BUY0 Q7Z2W9 156 163 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.0058621 73.665 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.3049 1.1556 11.678 4 Median 1.0738 1.0119 NaN 1 0 Median 1.5415 1.3273 NaN 1 0 Median 1.256 1.209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3558 1.1045 NaN 1 0 Median 6256000 2817100 3439000 1577700 834700 743010 2672700 1121800 1551000 1952300 836200 1116100 0 0 0 0 0 0 53324 24398 28926 35359 3237 37154 186180;186181;186182;186183 188953;188954;188955;188956 188953 4 VEAVNMAEGIIHDTETK NAEKYAEEDRRKKERVEAVNMAEGIIHDTE AVNMAEGIIHDTETKMEEFKDQLPADECNK R V E T K M 2 0 1 1 0 0 3 1 1 2 0 1 1 0 0 0 2 0 0 2 0 0 17 0 1855.8986 P38646 P38646 579 595 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 8.9166E-06 51.193 By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1.2269 1.084 13.613 6 Median 1.1243 1.0545 NaN 1 0 Median 1.3388 1.1143 16.97 3 0 Median 0.94284 0.99003 NaN 1 1 Median 1.4787 1.2707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59509000 25975000 33534000 12875000 5691100 7183900 40606000 17046000 23560000 5446200 3006600 2439700 581430 231630 349810 0 0 0 0 0 0 35360 2277 37155 186184;186185;186186;186187;186188;186189;186190 188957;188958;188959;188960;188961 188959 5 VEDAADSATKPENLSSK LTPRKLSTRNRTPAKVEDAADSATKPENLS DAADSATKPENLSSKTRGSIPTDVEVLPTE K V E S K T 3 0 1 2 0 0 2 0 0 0 1 2 0 0 1 3 1 0 0 1 0 0 17 1 1760.8428 P46013 P46013 405 421 MKI67 Antigen KI-67 yes yes 3 0.063935 9.9585 By matching By MS/MS 2 1 0.72137 0.82704 14.546 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75669 0.8638 6.1507 2 0 Median 0.67949 0.6792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2583800 1509500 1074300 0 0 0 0 0 0 1959800 1136800 822910 624040 372660 251390 0 0 0 0 0 0 35361 2335 37156 186191;186192;186193 188962 188962 1 VEDKWYSLSGR AWTHITIPESLRQGKVEDKWYSLSGRQGDD RQGKVEDKWYSLSGRQGDDKEGMINLVMSY K V E G R Q 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 2 0 1 1 1 0 0 11 1 1338.6568 Q9H0E2;E7EN89;F2Z2Y8;E9PP67;E9PQ25 Q9H0E2 147 157 TOLLIP Toll-interacting protein yes no 3 0.024073 36.954 By MS/MS 1 0.54172 0.54386 NaN 1 Median 0.54172 0.54386 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11094000 8310600 2783600 11094000 8310600 2783600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35362 3925 37157 186194 188963 188963 1 VEDLSLREENSENR ILEPLLERRASSGARVEDLSLREENSENRI RVEDLSLREENSENRISKFKRKDWSLSKSQ R V E N R I 0 2 2 1 0 0 4 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 14 1 1688.7966 Q9H7D0 Q9H7D0 1715 1728 DOCK5 Dedicator of cytokinesis protein 5 yes yes 3 0.00079208 42.789 By MS/MS 1 1.1693 1.0589 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1693 1.0589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1077300 517220 560090 0 0 0 0 0 0 0 0 0 1077300 517220 560090 0 0 0 0 0 0 35363 3981 37158 186195 188964 188964 1 VEDMAELTCLNEASVLHNLK NKDDIQKMNPPKFSKVEDMAELTCLNEASV ELTCLNEASVLHNLKERYYSGLIYTYSGLF K V E L K E 2 0 2 1 1 0 3 0 1 0 4 1 1 0 0 1 1 0 0 2 0 0 20 0 2285.1032 P35579;Q5BKV1;B1AH99;P35580;E7ERA5 P35579 83 102 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 0.05718 8.1875 By MS/MS By matching 2 1 1.099 0.89568 5.1137 3 Plateau NaN NaN NaN 0 0 Median 1.0667 0.92921 6.5797 2 0 Median 0.80826 0.89568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17194000 8110400 9083400 0 0 0 16548000 7745500 8803000 645370 364930 280450 0 0 0 0 0 0 0 0 0 35364 2244;2245 37159 186196;186197;186198 188965 188965 1 VEDPTFLNQLQSGVNR YERGEKPKVTDFGDKVEDPTFLNQLQSGVN EDPTFLNQLQSGVNRWIREIQKVTKLDRDP K V E N R W 0 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 1 0 0 2 0 0 16 0 1815.9115 Q14204 Q14204 236 251 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 7.4665E-07 94.191 By matching By MS/MS By MS/MS 1 1 1 0.92028 0.90154 2.2477 3 Plateau 0.92028 0.90879 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83168 0.88896 NaN 1 0 Median 0.99866 0.86885 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14901000 7781200 7119800 8023600 4041000 3982600 0 0 0 6013900 3331900 2682000 863480 408300 455180 0 0 0 0 0 0 35365 2865 37160 186199;186200;186201 188966;188967;188968 188966 3 VEDSSSNGQAHIHVVGVK YKCLRTVFPNHTVKRVEDSSSNGQAHIHVV SSSNGQAHIHVVGVKRRAIPLPIQMYYQQQ R V E V K R 1 0 1 1 0 1 1 2 2 1 0 1 0 0 0 3 0 0 0 4 0 0 18 0 1861.9282 Q68CP9;F8WCU9;F8W108 Q68CP9 583 600 ARID2 AT-rich interactive domain-containing protein 2 yes no 4 0.051931 19.39 By MS/MS 1 0.82231 0.91406 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82231 0.91406 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1862200 967460 894770 0 0 0 0 0 0 1862200 967460 894770 0 0 0 0 0 0 0 0 0 35366 3122 37161 186202 188969 188969 1 VEDSTMPIRR IVGAQLIHADKLGEKVEDSTMPIRRTVNST KLGEKVEDSTMPIRRTVNSTRETPPKSKLA K V E R R T 0 2 0 1 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 10 1 1202.6078 Q5SSJ5;X6RGJ2;B0QZK9;B0QZK8 Q5SSJ5 34 43 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3 0.0032826 39.622 By matching By MS/MS By MS/MS By matching 1 1 1 2 0.89615 0.90992 31.965 5 Median 0.89615 0.89776 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84399 0.94183 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66047 0.71762 NaN 1 0 Median 1.3908 1.2401 43.784 2 0 Median 7449800 3660700 3789200 237970 130240 107720 0 0 0 3257200 1593100 1664100 0 0 0 3033500 1622900 1410600 921140 314410 606740 35367 3075 37162 186203;186204;186205;186206;186207 188970;188971;188972 188970 3 VEDVEALDR AEEAGAENLFIFGLRVEDVEALDRKGYNAR FIFGLRVEDVEALDRKGYNAREYYDHLPEL R V E D R K 1 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1044.5088 P11216;H0Y4Z6 P11216 716 724 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase yes no 2 0.000491 99.802 By MS/MS 1 1.1809 1.0231 NaN 1 Median NaN NaN NaN 0 0 Median 1.1809 1.0231 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4186000 1950400 2235600 0 0 0 4186000 1950400 2235600 0 0 0 0 0 0 0 0 0 0 0 0 35368 1956 37163 186208 188973 188973 1 VEDVSAVEIVGGATR IEVPLYSLLEQTHLKVEDVSAVEIVGGATR VEDVSAVEIVGGATRIPAVKERIAKFFGKD K V E T R I 2 1 0 1 0 0 2 2 0 1 0 0 0 0 0 1 1 0 0 4 0 0 15 0 1500.7784 Q92598;A0A0A0MSM0 Q92598 332 346 HSPH1 Heat shock protein 105 kDa yes no 2 1.2605E-09 107.85 By MS/MS By MS/MS 1 1 0.8896 0.80707 54.257 2 Median 1.2275 1.1845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64474 0.54991 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8968100 3945900 5022200 7884800 3261200 4623700 0 0 0 0 0 0 1083200 684760 398470 0 0 0 0 0 0 35369 3541 37164 186209;186210 188974;188975 188974 2 VEDYEPYPDDGMGYGDYPK TPEERAAAAKKYNMRVEDYEPYPDDGMGYG EPYPDDGMGYGDYPKLPDRSQHERDPWYSW R V E P K L 0 0 0 4 0 0 2 3 0 0 0 1 1 0 3 0 0 0 4 1 0 0 19 0 2208.8834 K9J7I2;E9PQ68;O95169 K9J7I2 59 77 NDUFB8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial yes no 2 0.00017432 39.219 By MS/MS By matching 1 1 0.78498 0.71387 49.78 2 Median 0.5307 0.50205 NaN 1 0 Median 1.1611 1.0151 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3234700 1953400 1281300 3048100 1869000 1179100 186600 84411 102190 0 0 0 0 0 0 0 0 0 0 0 0 35370 980 37165 186211;186212 188976 188976 1 VEEAEPEEFVVEK TLQKMGKKQNGKSKKVEEAEPEEFVVEKVL KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K V E E K V 1 0 0 0 0 0 6 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1532.7246 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 22 34 CBX3 Chromobox protein homolog 3 yes no 2 0.00091324 62.408 By MS/MS By MS/MS 1 2 0.8607 0.85018 11.042 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78419 0.85018 NaN 1 0 Median 0.91577 0.74218 10.99 2 0 Median 102790000 52771000 50021000 0 0 0 0 0 0 0 0 0 0 0 0 64356000 32908000 31449000 38435000 19863000 18572000 35371 2795 37166 186213;186214;186215 188977;188978;188979;188980;188981;188982 188977 6 VEEAIVAR TQLLINQLWQLPTERVEEAIVARLPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP R V E A R L 2 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q15050 Q15050 84 91 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0029873 102.71 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.3777 1.1762 17.216 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.575 1.6537 NaN 1 0 Median 1.3777 1.133 NaN 1 0 Median 1.1741 1.1762 NaN 1 0 Median 1.3387 1.1445 10.915 2 0 Median 20912000 8739600 12173000 0 0 0 0 0 0 5455400 2145200 3310200 408340 202390 205950 8454800 3633100 4821700 6593600 2758900 3834700 35372 2920 37167 186216;186217;186218;186219;186220 188983;188984;188985;188986;188987 188985 5 VEEDVASDLVMK KTSGQKIKSHIQQLRVEEDVASDLVMKVDA QLRVEEDVASDLVMKVDALLSAQPKGDPRI R V E M K V 1 0 0 2 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 3 0 0 12 0 1333.6435 Q9NYU2 Q9NYU2 938 949 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 3.5722E-06 130.94 By MS/MS By MS/MS 1 1 1.2737 1.1762 17.789 2 Median 1.0778 1.0372 NaN 1 0 Median 1.5053 1.3338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30764000 13921000 16843000 20809000 10013000 10796000 9955400 3907800 6047600 0 0 0 0 0 0 0 0 0 0 0 0 35373 4179 37168 186221;186222 188988;188989;188990;188991 188988 4 VEEEEDESALKR EYCRISNLIVLHLRKVEEEEDESALKRSEL LRKVEEEEDESALKRSELVNWYLKEIESEI K V E K R S 1 1 0 1 0 0 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1432.6682 Q14566 Q14566 734 745 MCM6 DNA replication licensing factor MCM6 yes yes 3 0.007432 27.862 By MS/MS By matching By MS/MS 1 1 1 0.9362 0.9734 5.1701 3 Median 0.9362 0.96837 NaN 1 0 Median 1.0563 1.0617 NaN 1 0 Median 0.85222 0.9734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2434700 1085900 1348700 1179500 562780 616760 447430 190300 257130 807710 332860 474840 0 0 0 0 0 0 0 0 0 35374 2881 37169 186223;186224;186225 188992;188993;188994 188992 3 VEEEEERNQILQNEK KKQELEEILHDLESRVEEEEERNQILQNEK VEEEEERNQILQNEKKKMQAHIQDLEEQLD R V E E K K 0 1 2 0 0 2 6 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1885.9017 P35580 P35580 931 945 MYH10 Myosin-10 yes yes 2;3 6.3763E-10 103.21 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1 0.9412 0.94596 22.565 6 Median 0.9412 0.94596 4.7533 2 0 Median 1.3429 1.2657 NaN 1 0 Median 0.62951 0.7545 NaN 1 1 Median 1.3891 1.341 NaN 1 0 Median 0.75265 0.85299 NaN 1 0 Median NaN NaN NaN 0 0 Median 49059000 25611000 23449000 23970000 12103000 11867000 6918900 2785700 4133200 13876000 8503100 5373200 1565800 672360 893430 2728000 1546100 1181900 0 0 0 35375 2245 37170 186226;186227;186228;186229;186230;186231 188995;188996;188997;188998;188999;189000;189001 189000 7 VEEEEERNQILQNEKK KKQELEEILHDLESRVEEEEERNQILQNEK EEEEERNQILQNEKKKMQAHIQDLEEQLDE R V E K K K 0 1 2 0 0 2 6 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 16 2 2013.9967 P35580 P35580 931 946 MYH10 Myosin-10 yes yes 3 0.062374 11.044 By MS/MS By matching 1 1 0.73613 0.86994 19.038 2 Median 0.94156 0.9953 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57553 0.76037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5517700 3097600 2420100 3799800 1925600 1874200 0 0 0 1717900 1171900 545940 0 0 0 0 0 0 0 0 0 35376 2245 37171 186232;186233 189002 189002 1 VEEEIQTLSQVLAAK LSEEEQEELRRELAKVEEEIQTLSQVLAAK VEEEIQTLSQVLAAKEKHLAEIKRKLGINS K V E A K E 2 0 0 0 0 2 3 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 15 0 1656.8934 H0YC42;E5RFR7;H0YC44;P55327 H0YC42 86 100 TPD52 Tumor protein D52 no no 2 7.4307E-05 82.171 By MS/MS By matching By matching 1 1 1 1.018 0.92297 2.121 3 Median 0.99096 0.92297 NaN 1 0 Median 1.0511 0.8921 NaN 1 0 Median 1.018 0.92753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10255000 5019000 5236100 8046400 4007000 4039300 1908000 885390 1022600 300710 126610 174100 0 0 0 0 0 0 0 0 0 35377 1172;2499 37172 186234;186235;186236 189003 189003 1 VEEEIVTLR LTEAEEEELRAELTKVEEEIVTLRQVLAAK RAELTKVEEEIVTLRQVLAAKERHCGELKR K V E L R Q 0 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1086.5921 O43399;A0A087WYR3;A0A087WZ51 O43399 56 64 TPD52L2 Tumor protein D54 yes no 2 0.00048735 99.442 By MS/MS By MS/MS 1 2 1.1463 0.9613 11.202 3 Median 1.2026 1.1399 NaN 1 1 Median 1.1182 0.94191 2.8827 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14068000 6472900 7594700 10080000 4431200 5649300 3987100 2041700 1945400 0 0 0 0 0 0 0 0 0 0 0 0 35378 1571 37173 186237;186238;186239 189004;189005;189006 189004 3 VEEEQDLK VEESPEKIKVQTTPKVEEEQDLKFQIGELA KVQTTPKVEEEQDLKFQIGELANTLTSKFE K V E L K F 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 988.47131 Q8N3X1 Q8N3X1 520 527 FNBP4 Formin-binding protein 4 yes yes 2 0.060369 51.346 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35379 3370 37174 186240 189007 189007 1 VEEFGVVSNTR ______________________________ LASKVEEFGVVSNTRLIAAATSVLKTRFSY K V E T R L 0 1 1 0 0 0 2 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 11 0 1235.6146 E5RFX8;E5RI39;G5E954;H0YBQ5;J3KP90;E5RFK5;P24863;E5RIH8;Q5JV82 E5RFX8 12 22 CCNC Cyclin-C yes no 2 0.00013373 90.108 By MS/MS 1 1.0451 1.0033 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0451 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6728900 2987000 3741900 0 0 0 0 0 0 6728900 2987000 3741900 0 0 0 0 0 0 0 0 0 35380 835 37175 186241 189008;189009 189009 2 VEEILEQADYLYESGETEK YQVISQAAVVHATAKVEEILEQADYLYESG LEQADYLYESGETEKLYQLLTQYKESEDAE K V E E K L 1 0 0 1 0 1 6 1 0 1 2 1 0 0 0 1 1 0 2 1 0 0 19 0 2244.0322 H0YB83;E5RH53;Q96DB5;E5RGC8 H0YB83 29 47 RMDN1 Regulator of microtubule dynamics protein 1 yes no 2 0.0011248 35.204 By MS/MS By matching 1 1 1.0835 0.94808 9.7444 2 Median 0.91889 0.88495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2776 1.0157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1778200 840110 938070 1722100 818670 903400 0 0 0 0 0 0 56117 21442 34675 0 0 0 0 0 0 35381 845 37176 186242;186243 189010;189011 189010 2 VEEINPEYMLEK SAFHLTYNMVLNLLRVEEINPEYMLEKSFY LLRVEEINPEYMLEKSFYQFQHYRAIPGVV R V E E K S 0 0 1 0 0 0 4 0 0 1 1 1 1 0 1 0 0 0 1 1 0 0 12 0 1492.7119 P42285 P42285 576 587 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.00059955 71.016 By matching By MS/MS By MS/MS By matching 2 2 1 1 1.0669 0.96711 19.386 6 Median 0.91972 0.86879 23.499 2 0 Median NaN NaN NaN 0 0 Median 1.1088 1.203 3.554 2 0 Median 1.087 0.91175 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0431 0.87381 NaN 1 0 Median 33995000 16478000 17518000 13986000 6585500 7400900 0 0 0 18487000 9133600 9353300 1199400 603240 596190 0 0 0 322580 155170 167410 35382 2309 37177 186244;186245;186246;186247;186248;186249 189012;189013;189014;189015;189016;189017 189014 6 VEEISPNIR ASAFTEEQAVLYNQRVEEISPNIRYCAYNI VLYNQRVEEISPNIRYCAYNIGDQSAINEL R V E I R Y 0 1 1 0 0 0 2 0 0 2 0 0 0 0 1 1 0 0 0 1 0 0 9 0 1055.5611 Q9UHB9 Q9UHB9 237 245 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.00060862 109.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 1.0001 0.86546 16.597 5 Median 0.93991 0.92679 21.047 2 0 Median 1.0001 0.86546 NaN 1 0 Median 1.0899 1.1142 NaN 1 1 Median 0.93973 0.78446 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23669000 11518000 12150000 5718800 3066200 2652600 8134900 4002200 4132700 8006800 3424100 4582800 1808100 1025800 782300 0 0 0 0 0 0 35383 4274 37178 186250;186251;186252;186253;186254;186255;186256 189018;189019;189020;189021;189022;189023;189024 189022 7 VEEITMR DDIDVAQQFSLNQSRVEEITMREEVGNISI QFSLNQSRVEEITMREEVGNISILQENDFG R V E M R E 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 7 0 876.4375 O60216;E5RFV8;E5RIN7 O60216 140 146 RAD21 Double-strand-break repair protein rad21 homolog yes no 2 0.018227 81.297 By MS/MS 1 0.9477 1.0141 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9477 1.0141 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2383800 1201000 1182800 0 0 0 0 0 0 2383800 1201000 1182800 0 0 0 0 0 0 0 0 0 35384 1603 37179 186257 189025 189025 1 VEEKEGIPPQQQR IDIEPTDKVERIKERVEEKEGIPPQQQRLI ERVEEKEGIPPQQQRLIYSGKQIDGTVRDR R V E Q R L 0 1 0 0 0 3 3 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 13 1 1536.7896 E9PL57;F8VSA6;E9PS38;S4R3E9;Q15843 E9PL57 30 42 NEDD8-MDP1;NEDD8 NEDD8 yes no 3 0.032892 20.663 By MS/MS 1 0.90752 0.78507 NaN 1 Median NaN NaN NaN 0 0 Median 0.90752 0.78507 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 540530 304720 235810 0 0 0 540530 304720 235810 0 0 0 0 0 0 0 0 0 0 0 0 35385 956 37180 186258 189026 189026 1 VEEKPPNPMEGMTEEQKEHEAMK EYKEAKASINPVTGRVEEKPPNPMEGMTEE MEGMTEEQKEHEAMKLVTMFDKLSRNRVIQ R V E M K L 1 0 1 0 0 1 7 1 1 0 0 3 3 0 3 0 1 0 0 1 0 0 23 2 2697.2084 Q9NPQ8;H0YE35;H0YC88 Q9NPQ8 460 482 RIC8A Synembryn-A yes no 4 6.337E-05 33.833 By MS/MS 1 0.767 0.78268 NaN 1 Median 0.767 0.78268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4581900 2260400 2321600 4581900 2260400 2321600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35386 4057 37181 186259 189027 189027 1 VEENFLK LNREGKQKADKNRARVEENFLKLTHVQRQE KADKNRARVEENFLKLTHVQRQEAAQSRRE R V E L K L 0 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 7 0 877.45453 Q96A33;A0A087WYW6;J3QR89 Q96A33 413 419 CCDC47 Coiled-coil domain-containing protein 47 yes no 2 0.04771 41.302 By MS/MS 1 1.326 1.1323 NaN 1 Median NaN NaN NaN 0 0 Median 1.326 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3119300 1212100 1907200 0 0 0 3119300 1212100 1907200 0 0 0 0 0 0 0 0 0 0 0 0 35387 3592 37182 186260 189028 189028 1 VEEQEPELTSTPNFVVEVIK PPTFDGEEEPSQGQKVEEQEPELTSTPNFV PELTSTPNFVVEVIKNDDGKKALVLDCHYP K V E I K N 0 0 1 0 0 1 5 0 0 1 1 1 0 1 2 1 2 0 0 4 0 0 20 0 2286.1631 Q07021;I3L3Q7;I3L3B0 Q07021 155 174 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 2;3 0.0016606 29.689 By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 0.88407 0.80766 9.7107 7 Median 0.75949 0.71163 NaN 1 0 Median 0.94765 0.80044 1.27 2 0 Median 0.84 0.81897 11.908 2 0 Median NaN NaN NaN 0 0 Median 0.88391 0.91968 NaN 1 0 Median 1.0642 0.89586 NaN 1 0 Median 12982000 6418400 6563800 3476000 1800700 1675300 6051100 2900600 3150500 1182700 654010 528670 0 0 0 324410 179810 144600 1948000 883260 1064800 35388 2729 37183 186261;186262;186263;186264;186265;186266;186267 189029;189030;189031 189030 3 VEEQEPELTSTPNFVVEVIKNDDGKK PPTFDGEEEPSQGQKVEEQEPELTSTPNFV PNFVVEVIKNDDGKKALVLDCHYPEDEVGQ K V E K K A 0 0 2 2 0 1 5 1 0 1 1 3 0 1 2 1 2 0 0 4 0 0 26 2 2943.4713 Q07021;I3L3Q7;I3L3B0 Q07021 155 180 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes no 4 1.1912E-08 45.07 By MS/MS By MS/MS 1 1 0.84897 0.86304 10.166 2 Median 0.87813 0.92737 NaN 1 0 Median 0.82078 0.80319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14943000 7711200 7231400 10435000 5391700 5043200 4507700 2319500 2188200 0 0 0 0 0 0 0 0 0 0 0 0 35389 2729 37184 186268;186269 189032;189033 189032 2 VEEQGNQMR RLDKIRQQLEEVHAKVEEQGNQMRLQAEAF EEVHAKVEEQGNQMRLQAEAFQARLRSWFE K V E M R L 0 1 1 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1089.4873 CON__Q03247 CON__Q03247 260 268 yes yes 2 0.017083 57.281 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 839840 839840 0 0 0 0 0 0 0 0 0 0 0 0 0 839840 839840 0 0 0 0 + 35390 767 37185 186270 189034 189034 1 VEESSWLIEDGK GQPAIIDGELYNEVKVEESSWLIEDGKVVT EVKVEESSWLIEDGKVVTVHLEKINKMEWW K V E G K V 0 0 0 1 0 0 3 1 0 1 1 1 0 0 0 2 0 1 0 1 0 0 12 0 1390.6616 Q9Y266 Q9Y266 228 239 NUDC Nuclear migration protein nudC yes yes 2 0.0012941 83 By MS/MS 1 1.1644 1.2123 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1644 1.2123 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7972300 3365000 4607300 0 0 0 0 0 0 7972300 3365000 4607300 0 0 0 0 0 0 0 0 0 35391 4376 37186 186271 189035 189035 1 VEESYAMPTK YAQYVHNLCNSLSIKVEESYAMPTKTIEVL SLSIKVEESYAMPTKTIEVLQLQDQGSKML K V E T K T 1 0 0 0 0 0 2 0 0 0 0 1 1 0 1 1 1 0 1 1 0 0 10 0 1153.5325 F5H702;Q96GC5 F5H702 22 31 MRPL48 39S ribosomal protein L48, mitochondrial yes no 2 0.0033915 70.028 By MS/MS 1 1.2484 1.083 NaN 1 Median NaN NaN NaN 0 0 Median 1.2484 1.083 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1447900 664670 783210 0 0 0 1447900 664670 783210 0 0 0 0 0 0 0 0 0 0 0 0 35392 1044 37187 186272 189036 189036 1 VEETVKHDWDR LLGQALQDSRNYGWKVEETVKHDWDRMIEA YGWKVEETVKHDWDRMIEAVQNHIGSLNWG K V E D R M 0 1 0 2 0 0 2 0 1 0 0 1 0 0 0 0 1 1 0 2 0 0 11 1 1412.6684 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3;A0A0B4J225 E9PIR7 90 100 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 3 0.0043053 37.426 By MS/MS By MS/MS 1 1 1.4086 1.3508 24.302 2 Median 1.5935 1.6041 NaN 1 0 Median 1.2452 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5204100 2252000 2952100 2376300 1056700 1319500 2827900 1195300 1632600 0 0 0 0 0 0 0 0 0 0 0 0 35393 11 37188 186273;186274 189037;189038 189038 2 VEEVELPVEK KANKLDHVVTIIKGKVEEVELPVEKVDIII IIKGKVEEVELPVEKVDIIISEWMGYCLFY K V E E K V 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 0 0 0 0 3 0 0 10 0 1169.618 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4;Q9NR22 E9PKG1 100 109 PRMT1;PRMT8 Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8 yes no 2 0.00071899 104.2 By MS/MS By MS/MS By MS/MS 1 1 1 0.73113 0.75508 15.662 3 Plateau NaN NaN NaN 0 0 Median 0.85648 0.73605 NaN 1 0 Median 0.73113 0.75508 NaN 1 0 Median 0.6726 0.56889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24764000 10378000 14386000 0 0 0 3546800 1775100 1771700 18761000 7273900 11487000 2456400 1329000 1127400 0 0 0 0 0 0 35394 947 37189 186275;186276;186277 189039;189040;189041;189042 189039 4 VEEVGPYTYR NVTNPEEILRGETPRVEEVGPYTYRELRNK GETPRVEEVGPYTYRELRNKANIQFGDNGT R V E Y R E 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 0 1 0 2 2 0 0 10 0 1211.5823 A0A1W2PPU6;A0A1W2PS43;A0A1W2PRS1;Q14108;A0A1W2PPX5;A0A1W2PQR6;A0A1W2PQB7;A0A1W2PSE4;A0A1W2PS70;A0A1W2PNX7;D6RDG0 A0A1W2PPU6 83 92 SCARB2 Lysosome membrane protein 2 yes no 2 6.7789E-05 133.57 By MS/MS By MS/MS 1 1 1.1539 1.0436 27.815 2 Median 0.90614 0.8573 NaN 1 0 Median 1.4695 1.2705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27984000 13421000 14563000 12749000 7729500 5020000 15235000 5691600 9543100 0 0 0 0 0 0 0 0 0 0 0 0 35395 340 37190 186278;186279 189043;189044;189045;189046 189046 4 VEFATLQEALAHALTEKEGKDQELAK AELEMRLQNALNEQRVEFATLQEALAHALT HALTEKEGKDQELAKLRGLEAAQIKELEEL R V E A K L 5 0 0 1 0 2 5 1 1 0 4 3 0 1 0 0 2 0 0 1 0 0 26 2 2868.4869 A0A087WY61;Q14980 Q14980 1043 1068 NUMA1 Nuclear mitotic apparatus protein 1 no no 4 0.0026179 25.021 By MS/MS 1 0.81316 0.94211 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81316 0.94211 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9026200 4734700 4291500 0 0 0 0 0 0 9026200 4734700 4291500 0 0 0 0 0 0 0 0 0 35396 2905;77 37191 186280 189047;189048 189047 2 VEFILEQMR ELQVETYGSMEKKERVEFILEQMRLCLAVK MEKKERVEFILEQMRLCLAVKDYIRTQIIS R V E M R L 0 1 0 0 0 1 2 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1163.6009 O00232 O00232 183 191 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.011161 71.501 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.175 1.0389 19.96 3 Median NaN NaN NaN 0 0 Median 1.1355 0.9558 NaN 1 0 Median 1.3873 1.3973 NaN 1 0 Median 1.175 1.0389 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12556000 5775900 6780600 0 0 0 9566700 4508300 5058400 2913100 1234400 1678700 76592 33095 43497 0 0 0 0 0 0 35397 1449 37192 186281;186282;186283;186284 189049;189050 189049 2 VEFMDDTSR VLGRTGSQGQCTQVRVEFMDDTSRSIIRNV QCTQVRVEFMDDTSRSIIRNVKGPVREGDV R V E S R S 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1098.4652 P62857 P62857 32 40 RPS28 40S ribosomal protein S28 yes yes 2 0.00094944 88.948 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 3 3 5 2 1.2259 1.0471 13.775 16 Median 1.1354 1.102 8.1726 3 0 Median 1.1583 0.93684 4.9109 3 0 Median 1.2418 1.2414 8.6253 3 0 Median 1.3214 0.98342 8.6807 5 0 Median NaN NaN NaN 0 0 Median 1.2592 0.97966 20.639 2 0 Median 68583000 31656000 36926000 20842000 10726000 10116000 14553000 6529100 8024100 10462000 4643100 5819300 21736000 9386600 12349000 0 0 0 989470 371230 618240 35398 2602 37193;37194 186285;186286;186287;186288;186289;186290;186291;186292;186293;186294;186295;186296;186297;186298;186299;186300 189051;189052;189053;189054;189055;189056;189057;189058;189059;189060;189061;189062 189052 1267 12 VEGDLKGPEADIK KGPKVKGDVDVTLPKVEGDLKGPEADIKGP PKVEGDLKGPEADIKGPKVDINTPDVDVHG K V E I K G 1 0 0 2 0 0 2 2 0 1 1 2 0 0 1 0 0 0 0 1 0 0 13 1 1369.7089 Q09666 Q09666 4746 4758 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0001787 70.622 By matching By MS/MS By MS/MS 1 1 3 0.86308 0.88248 8.8595 5 Median NaN NaN NaN 0 0 Median 0.7994 0.76251 NaN 1 0 Median 0.78106 0.88755 NaN 1 0 Median 0.86863 0.88248 6.0748 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25371000 12933000 12437000 0 0 0 7983400 3959600 4023700 3440100 1812800 1627200 13947000 7160900 6786300 0 0 0 0 0 0 35399 2749 37195 186301;186302;186303;186304;186305 189063;189064;189065;189066;189067;189068;189069;189070;189071 189067 9 VEGDLKGPEADIKGPK KGPKVKGDVDVTLPKVEGDLKGPEADIKGP EGDLKGPEADIKGPKVDINTPDVDVHGPDW K V E P K V 1 0 0 2 0 0 2 3 0 1 1 3 0 0 2 0 0 0 0 1 0 0 16 2 1651.8781 Q09666 Q09666 4746 4761 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.0884E-05 62.377 By MS/MS By matching By MS/MS By MS/MS 2 1 2 3 0.80986 0.95142 26.915 8 Median 0.79188 0.93538 18.453 2 0 Median 0.62947 0.65571 NaN 1 0 Median 0.87982 1.0924 35.584 2 1 Median 0.93128 1.1221 28.1 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35422000 18056000 17366000 14309000 6987100 7322000 2679100 1209400 1469700 15128000 8205100 6922800 3306100 1654300 1651800 0 0 0 0 0 0 35400 2749 37196 186306;186307;186308;186309;186310;186311;186312;186313 189072;189073;189074;189075;189076;189077;189078;189079;189080 189077 9 VEGDLKGPEIDIK KGPKVKGDVDVSLPKVEGDLKGPEIDIKGP PKVEGDLKGPEIDIKGPSLDIDTPDVNIEG K V E I K G 0 0 0 2 0 0 2 2 0 2 1 2 0 0 1 0 0 0 0 1 0 0 13 1 1411.7559 Q09666 Q09666 4410 4422 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00027007 73.927 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 1.2016 1.1912 25.993 7 Median 0.89653 0.9767 NaN 1 1 Median 1.2469 1.1912 NaN 1 0 Median 1.3549 1.535 NaN 1 1 Median 1.1461 1.1633 29.063 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51527000 24043000 27484000 11526000 6305300 5221100 13896000 6277300 7618700 15766000 6726400 9039600 10338000 4734100 5604400 0 0 0 0 0 0 35401 2749 37197 186314;186315;186316;186317;186318;186319;186320 189081;189082;189083;189084;189085;189086;189087;189088 189086 8 VEGDLKGPEIDVK KAPKLKTDVDVSLPKVEGDLKGPEIDVKAP PKVEGDLKGPEIDVKAPKMDVNVGDIDIEG K V E V K A 0 0 0 2 0 0 2 2 0 1 1 2 0 0 1 0 0 0 0 2 0 0 13 1 1397.7402 Q09666 Q09666 1604 1616 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00046069 53.754 By MS/MS 1 0.93083 1.0506 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93083 1.0506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103380000 51862000 51519000 0 0 0 0 0 0 103380000 51862000 51519000 0 0 0 0 0 0 0 0 0 35402 2749 37198 186321 189089 189089 1 VEGDLKGPEVDIR KGPKVKGDVDISLPKVEGDLKGPEVDIRGP PKVEGDLKGPEVDIRGPQVDIDVPDVGVQG K V E I R G 0 1 0 2 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 13 1 1425.7464 Q09666 Q09666 2988 3000 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 6.5969E-06 115.29 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 4 0.96687 0.97613 17.502 9 Median 0.9185 0.96342 9.0998 3 0 Median 1.0592 0.97613 NaN 1 0 Median 0.90012 1.046 NaN 1 0 Median 1.0668 1.0117 26.574 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123720000 60985000 62739000 45769000 23944000 21825000 23225000 10243000 12982000 34411000 17018000 17393000 20320000 9780700 10539000 0 0 0 0 0 0 35403 2749 37199 186322;186323;186324;186325;186326;186327;186328;186329;186330 189090;189091;189092;189093;189094;189095;189096;189097;189098;189099;189100;189101;189102;189103;189104;189105 189093 16 VEGDLKGPEVDIRDPK KGPKVKGDMDISLPKVEGDLKGPEVDIRDP EGDLKGPEVDIRDPKVDIDVPDVDVQGPDW K V E P K V 0 1 0 3 0 0 2 2 0 1 1 2 0 0 2 0 0 0 0 2 0 0 16 2 1765.921 Q09666 Q09666 4618 4633 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.5208E-05 65.467 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 5 0.83885 0.91913 22.273 13 Median 0.70352 0.7656 5.4319 2 1 Median 0.77886 0.82979 14.461 2 0 Median 0.85845 1.1367 26.547 4 0 Median 0.88173 0.98691 15.45 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 146240000 82539000 63702000 39253000 24637000 14616000 33049000 19371000 13678000 47433000 24911000 22521000 26506000 13620000 12886000 0 0 0 0 0 0 35404 2749 37200 186331;186332;186333;186334;186335;186336;186337;186338;186339;186340;186341;186342;186343 189106;189107;189108;189109;189110;189111;189112;189113;189114;189115;189116;189117;189118 189112 13 VEGDLKGPEVDLK TGPKIKGDVDVTGPKVEGDLKGPEVDLKGP PKVEGDLKGPEVDLKGPKVDIDVPDVNVQG K V E L K G 0 0 0 2 0 0 2 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 13 1 1397.7402 Q09666 Q09666 2860 2872 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 4.0193E-24 150.49 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 2 6 1 0.93083 1.0133 10.881 11 Median 0.98681 0.96226 10.577 3 0 Median NaN NaN NaN 0 0 Median 0.9023 1.0317 2.5559 2 1 Median 1.0111 1.0273 11.018 5 0 Median 0.74467 0.80188 NaN 1 1 Median NaN NaN NaN 0 0 Median 326420000 162800000 163620000 58276000 27976000 30300000 0 0 0 117720000 60364000 57356000 142090000 69539000 72550000 8338100 4925800 3412300 0 0 0 35405 2749 37201 186344;186345;186346;186347;186348;186349;186350;186351;186352;186353;186354;186355;186356;186357;186358;186359;186360;186361;186362 189119;189120;189121;189122;189123;189124;189125;189126;189127;189128;189129;189130;189131;189132;189133;189134;189135;189136;189137;189138;189139;189140;189141;189142;189143;189144;189145;189146;189147;189148;189149;189150;189151;189152;189153 189124 35 VEGDLKGPEVDLKGPK TGPKIKGDVDVTGPKVEGDLKGPEVDLKGP EGDLKGPEVDLKGPKVDIDVPDVNVQGPDW K V E P K V 0 0 0 2 0 0 2 3 0 0 2 3 0 0 2 0 0 0 0 2 0 0 16 2 1679.9094 Q09666 Q09666 2860 2875 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3;4 1.5026E-11 159 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 1 4 3 1 0.75809 0.90076 23.752 14 Median 0.6792 0.78046 21.599 5 0 Median 0.85819 0.89396 NaN 1 0 Median 0.80953 1.0051 10.691 4 0 Median 1.0397 1.2528 19.596 3 3 Plateau 1.1232 1.3148 NaN 1 0 Median NaN NaN NaN 0 0 Median 349320000 189760000 159550000 166680000 94519000 72157000 16175000 6660900 9513800 150270000 80080000 70191000 12045000 6065900 5979100 4150900 2438800 1712100 0 0 0 35406 2749 37202 186363;186364;186365;186366;186367;186368;186369;186370;186371;186372;186373;186374;186375;186376 189154;189155;189156;189157;189158;189159;189160;189161;189162;189163;189164;189165;189166;189167;189168;189169;189170;189171;189172;189173;189174;189175;189176;189177;189178;189179;189180;189181 189156 28 VEGDMKVPDVDIKGPK KGPKVKGDMDVSLPKVEGDMKVPDVDIKGP EGDMKVPDVDIKGPKVDINAPDVDVQGPDW K V E P K V 0 0 0 3 0 0 1 2 0 1 0 3 1 0 2 0 0 0 0 3 0 0 16 2 1725.8971 Q09666 Q09666 3116 3131 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 3.3801E-05 68.944 By MS/MS 2 0.79588 0.9401 5.1186 2 Median 0.79588 0.9401 5.1186 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29614000 15199000 14415000 29614000 15199000 14415000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35407 2749 37203 186377;186378 189182;189183;189184 189183 3 VEGDMQVPDLDIK KGPKVKGDMDVSLPKVEGDMQVPDLDIKGP PKVEGDMQVPDLDIKGPKVDINAPDVDVRG K V E I K G 0 0 0 3 0 1 1 1 0 1 1 1 1 0 1 0 0 0 0 2 0 0 13 0 1457.7072 Q09666 Q09666 3898 3910 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00016996 82.494 By MS/MS By MS/MS By matching 1 2 1 1.5367 1.4523 28.043 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1002 1.1746 NaN 1 0 Median 1.047 1.0186 4.7203 2 0 Median 0.58866 0.62134 NaN 1 0 Median NaN NaN NaN 0 0 Median 27750000 13617000 14133000 0 0 0 0 0 0 17876000 8687500 9188700 7246100 3339000 3907100 2628000 1590300 1037700 0 0 0 35408 2749 37204;37205 186379;186380;186381;186382 189185;189186;189187;189188;189189 189186 1468 5 VEGDMQVPDLDIKGPK KGPKVKGDMDVSLPKVEGDMQVPDLDIKGP EGDMQVPDLDIKGPKVDINAPDVDVRGPDW K V E P K V 0 0 0 3 0 1 1 2 0 1 1 2 1 0 2 0 0 0 0 2 0 0 16 1 1739.8764 Q09666 Q09666 3898 3913 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 3.4906E-05 69.451 By MS/MS By MS/MS By matching 2 3 1 0.87778 0.98378 22.571 6 Median 0.72517 0.78939 40.444 2 0 Median NaN NaN NaN 0 0 Median 0.9172 1.0374 14.515 3 0 Plateau 0.99984 1.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103500000 55654000 47845000 55730000 30645000 25085000 0 0 0 47073000 24604000 22469000 695630 404970 290670 0 0 0 0 0 0 35409 2749 37206;37207 186383;186384;186385;186386;186387;186388 189190;189191;189192;189193;189194;189195;189196;189197;189198 189195 1468 9 VEGDNIYVR APHLQLIEGKKNSLRVEGDNIYVRHSNLML KKNSLRVEGDNIYVRHSNLMLEELDKAQED R V E V R H 0 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 2 0 0 9 0 1063.5298 O43491;Q6ZSX4;H0Y5B0;E9PMV8;E9PPC9 O43491 617 625 EPB41L2 Band 4.1-like protein 2 yes no 2 0.00045508 96.253 By MS/MS By MS/MS 1 1 0.56954 0.47043 77.67 2 Median NaN NaN NaN 0 0 Median 0.97224 0.81474 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33364 0.27163 NaN 1 1 Median 10040000 5586600 4453200 0 0 0 8583200 4481600 4101600 0 0 0 0 0 0 0 0 0 1456600 1105000 351580 35410 1573 37208 186389;186390 189199;189200 189199 2 VEGEIKAPDVDIK KGPKMKGDYDVTVPKVEGEIKAPDVDIKGP PKVEGEIKAPDVDIKGPKVDINAPDVEVHG K V E I K G 1 0 0 2 0 0 2 1 0 2 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1411.7559 Q09666 Q09666 1476 1488 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.018261 24.53 By MS/MS 1 0.91851 1.0004 NaN 1 Median 0.91851 1.0004 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15316000 7170300 8146200 15316000 7170300 8146200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35411 2749 37209 186391 189201 189201 1 VEGEIKAPDVDIKGPK KGPKMKGDYDVTVPKVEGEIKAPDVDIKGP EGEIKAPDVDIKGPKVDINAPDVEVHGPDW K V E P K V 1 0 0 2 0 0 2 2 0 2 0 3 0 0 2 0 0 0 0 2 0 0 16 2 1693.9251 Q09666 Q09666 1476 1491 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.4541E-05 63.631 By MS/MS 2 0.83038 0.98086 12.798 2 Median 0.83038 0.98086 12.798 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64393000 34304000 30089000 64393000 34304000 30089000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35412 2749 37210 186392;186393 189202;189203 189203 2 VEGELEEMER AKDEELLKVKEKQTKVEGELEEMERKHQQL EKQTKVEGELEEMERKHQQLLEEKNILAEQ K V E E R K 0 1 0 0 0 0 5 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1219.5391 P35580 P35580 871 880 MYH10 Myosin-10 yes yes 2 8.1206E-05 133.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 0.98451 0.9401 28.119 8 Median 0.98451 0.95554 5.0909 2 0 Median 1.1813 0.9967 5.4815 2 0 Median 0.48029 0.52532 NaN 1 0 Median 1.1002 0.97049 NaN 1 0 Median 0.60236 0.63126 25.044 2 0 Median NaN NaN NaN 0 0 Median 50163000 25693000 24470000 19156000 9436500 9719400 16088000 7494400 8593200 9140100 5379800 3760300 1003200 410770 592430 4775900 2971200 1804700 0 0 0 35413 2245 37211;37212 186394;186395;186396;186397;186398;186399;186400;186401 189204;189205;189206;189207;189208;189209;189210;189211;189212 189206 1007 9 VEGELEEMERK AKDEELLKVKEKQTKVEGELEEMERKHQQL KQTKVEGELEEMERKHQQLLEEKNILAEQL K V E R K H 0 1 0 0 0 0 5 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1347.634 P35580 P35580 871 881 MYH10 Myosin-10 yes yes 3 0.000464 56.225 By MS/MS By matching 1 1 0.96205 0.94654 1.9427 2 Median 0.92164 0.93363 NaN 1 0 Median 1.0042 0.95964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5217700 2621300 2596400 3629600 1841500 1788000 1588200 779820 808360 0 0 0 0 0 0 0 0 0 0 0 0 35414 2245 37213 186402;186403 189213 189213 1 VEGEMKVPDVDIK KGPKLKGDVDVSLPEVEGEMKVPDVDIKGP PEVEGEMKVPDVDIKGPKVDISAPDVDVHG E V E I K G 0 0 0 2 0 0 2 1 0 1 0 2 1 0 1 0 0 0 0 3 0 0 13 1 1457.7436 Q09666 Q09666 1348 1360 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 0.0014502 57.348 By MS/MS By MS/MS 1 2 0.88362 0.94866 19.871 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96231 1.0918 NaN 1 1 Median 0.81137 0.82431 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10319000 5568200 4750400 0 0 0 0 0 0 7617900 4022600 3595300 2700700 1545600 1155100 0 0 0 0 0 0 35415 2749 37214;37215 186404;186405;186406 189214;189215;189216 189216 1469 3 VEGEMKVPDVDIKGPK KGPKLKGDVDVSLPEVEGEMKVPDVDIKGP EGEMKVPDVDIKGPKVDISAPDVDVHGPDW E V E P K V 0 0 0 2 0 0 2 2 0 1 0 3 1 0 2 0 0 0 0 3 0 0 16 2 1739.9128 Q09666 Q09666 1348 1363 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3;4 4.0256E-05 62.861 By MS/MS By MS/MS 3 3 0.69461 0.82049 21.745 5 Median 0.69264 0.81816 0.40059 2 1 Median NaN NaN NaN 0 0 Median 0.9806 1.2175 25.226 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72353000 37541000 34812000 39506000 21087000 18419000 0 0 0 32847000 16454000 16393000 0 0 0 0 0 0 0 0 0 35416 2749 37216;37217 186407;186408;186409;186410;186411;186412 189217;189218;189219;189220;189221;189222;189223;189224;189225 189222 1469 9 VEGEMKVPDVDIR KGPKVKGDMDVSVPKVEGEMKVPDVDIRGP PKVEGEMKVPDVDIRGPKVDIDAPDVDVHG K V E I R G 0 1 0 2 0 0 2 1 0 1 0 1 1 0 1 0 0 0 0 3 0 0 13 1 1485.7497 Q09666 Q09666 2209 2221 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 9.5384E-05 94.465 By MS/MS By MS/MS By matching 3 2 1 0.94384 1.0766 10.727 6 Median 0.93342 0.97546 13.502 3 0 Median NaN NaN NaN 0 0 Median 0.92841 1.0766 3.9696 2 0 Median 1.2542 1.2108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61367000 30656000 30711000 36404000 17885000 18519000 0 0 0 23815000 12336000 11479000 1148700 435770 712910 0 0 0 0 0 0 35417 2749 37218;37219 186413;186414;186415;186416;186417;186418 189226;189227;189228;189229;189230 189228 1470 5 VEGEMKVPDVEIK KGPKVKGDVDVSVPKVEGEMKVPDVEIKGP PKVEGEMKVPDVEIKGPKMDIDAPDVEVQG K V E I K G 0 0 0 1 0 0 3 1 0 1 0 2 1 0 1 0 0 0 0 3 0 0 13 1 1471.7592 Q09666 Q09666 1220 1232 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.00024183 69.03 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35418 2749 37220 186419 189231 189231 1471 1 VEGEMKVPDVEIKGPK KGPKVKGDVDVSVPKVEGEMKVPDVEIKGP EGEMKVPDVEIKGPKMDIDAPDVEVQGPDW K V E P K M 0 0 0 1 0 0 3 2 0 1 0 3 1 0 2 0 0 0 0 3 0 0 16 2 1753.9284 Q09666 Q09666 1220 1235 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 4.2323E-05 62.861 By matching By MS/MS 1 2 0.87677 1.0886 11.088 3 Median 0.78612 0.92858 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90096 1.1186 3.8488 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18183000 9019600 9163300 7231800 3891300 3340500 0 0 0 10951000 5128300 5822700 0 0 0 0 0 0 0 0 0 35419 2749 37221 186420;186421;186422 189232;189233 189232 2 VEGFPTIYFAPSGDK KMDATANDVPSDRYKVEGFPTIYFAPSGDK VEGFPTIYFAPSGDKKNPVKFEGGDRDLEH K V E D K K 1 0 0 1 0 0 1 2 0 1 0 1 0 2 2 1 1 0 1 1 0 0 15 0 1626.793 P13667;A0A499FI48 P13667 597 611 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00034031 65.395 By MS/MS 1 0.9775 0.86731 NaN 1 Median NaN NaN NaN 0 0 Median 0.9775 0.86731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1676200 869120 807040 0 0 0 1676200 869120 807040 0 0 0 0 0 0 0 0 0 0 0 0 35420 1993 37222 186423 189234 189234 1 VEGFPTIYFAPSGDKK KMDATANDVPSDRYKVEGFPTIYFAPSGDK EGFPTIYFAPSGDKKNPVKFEGGDRDLEHL K V E K K N 1 0 0 1 0 0 1 2 0 1 0 2 0 2 2 1 1 0 1 1 0 0 16 1 1754.8879 P13667;A0A499FI48 P13667 597 612 PDIA4 Protein disulfide-isomerase A4 yes no 3 0.0019855 28.956 By MS/MS By matching By matching 1 1 1 1.1318 1.1056 29.251 3 Median 0.68737 0.70979 NaN 1 0 Median 1.2801 1.2331 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1318 1.1056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3846300 2039800 1806500 3155700 1705300 1450400 377510 156670 220840 0 0 0 313060 177790 135280 0 0 0 0 0 0 35421 1993 37223 186424;186425;186426 189235;189236 189235 2 VEGGTPLFTLR ANGVIEALLVPDGGKVEGGTPLFTLRKTGA DGGKVEGGTPLFTLRKTGAAPAKAKPAEAP K V E L R K 0 1 0 0 0 0 1 2 0 0 2 0 0 1 1 0 2 0 0 1 0 0 11 0 1188.6503 P36957;Q86SW4 P36957 134 144 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes no 2 0.00012637 119.68 By MS/MS By MS/MS By MS/MS 1 1 1 0.9766 0.96094 25.335 3 Median 0.91939 0.86869 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9766 0.96094 NaN 1 0 Median 1.6118 1.4046 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37478000 17474000 20005000 22220000 11083000 11137000 0 0 0 14030000 5943100 8086900 1228600 447630 780960 0 0 0 0 0 0 35422 2265 37224 186427;186428;186429 189237;189238;189239;189240 189237 4 VEGILQDVQK LQRLRGTISKAVQNKVEGILQDVQKFSDND AVQNKVEGILQDVQKFSDNDKLYLYLQLPS K V E Q K F 0 0 0 1 0 2 1 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1127.6186 P48382;F8W689;A0A0A0MSQ2;F6UE82;F6S3S0;A0A0A0MT34;A0A0A0MSM9;F6X9D6;F6R6G4 P48382 46 55 RFX5 DNA-binding protein RFX5 yes no 2 0.0013065 66.692 By matching By MS/MS By matching 1 1 1 0.66908 0.68455 59.057 3 Median NaN NaN NaN 0 0 Median 1.0372 0.91908 NaN 1 0 Median 0.66908 0.68455 NaN 1 0 Median 0.34349 0.29456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12657000 6823900 5833000 0 0 0 2433800 1178000 1255800 9071100 4977800 4093300 1152000 668100 483950 0 0 0 0 0 0 35423 2360 37225 186430;186431;186432 189241;189242 189241 2 VEGIVHPTTAEIDLKEDIGK LSLTQSDISHIGSMRVEGIVHPTTAEIDLK HPTTAEIDLKEDIGKALEKAGGKEFLETVK R V E G K A 1 0 0 2 0 0 3 2 1 3 1 2 0 0 1 0 2 0 0 2 0 0 20 1 2163.1423 Q9P0M6;Q5SQT3 Q9P0M6 212 231 H2AFY2 Core histone macro-H2A.2;Histone H2A yes no 3;4 9.1285E-09 66.874 By MS/MS By matching 4 1 0.68036 0.78221 27.037 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65495 0.72283 10.074 4 3 Median 1.4389 1.2824 NaN 1 0 Median 58691000 33355000 25336000 0 0 0 0 0 0 0 0 0 0 0 0 57316000 32778000 24538000 1375500 577900 797640 35424 4206 37226 186433;186434;186435;186436;186437 189243;189244;189245;189246;189247 189243 5 VEGNLRVEYLDDRNTFR CSDSDGLAPPQHLIRVEGNLRVEYLDDRNT GNLRVEYLDDRNTFRHSVVVPYEPPEVGSD R V E F R H 0 3 2 2 0 0 2 1 0 0 2 0 0 1 0 0 1 0 1 2 0 0 17 2 2095.0447 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22;E7EQX7;E9PFT5 A0A0U1RQC9 158 174 TP53 Cellular tumor antigen p53 yes no 3;4 7.0317E-11 102.29 By MS/MS By matching 2 1 0.97771 1.275 7.8566 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96128 1.2666 2.3958 2 0 Median 1.0481 1.109 NaN 1 0 Median 17908000 9174400 8733600 0 0 0 0 0 0 0 0 0 0 0 0 17035000 8782700 8252400 872940 391750 481180 35425 299 37227 186438;186439;186440 189248;189249;189250;189251 189249 4 VEGPAFTDAIR DCIRHCNNGIPEDSKVEGPAFTDAIRMYRQ EDSKVEGPAFTDAIRMYRQSKELYGTWEML K V E I R M 2 1 0 1 0 0 1 1 0 1 0 0 0 1 1 0 1 0 0 1 0 0 11 0 1174.5982 Q96TA1 Q96TA1 204 214 FAM129B Niban-like protein 1 yes yes 2 0.047152 45.161 By MS/MS 1 1.9432 1.8386 NaN 1 Median 1.9432 1.8386 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10940000 2960200 7979500 10940000 2960200 7979500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35426 3743 37228 186441 189252 189252 1 VEGPGSLGLEESGSR RNMVQTAVVPVKKKRVEGPGSLGLEESGSR VEGPGSLGLEESGSRRMQNFAFSGGLYGGL R V E S R R 0 1 0 0 0 0 3 4 0 0 2 0 0 0 1 3 0 0 0 1 0 0 15 0 1472.7107 Q12972;A0A0A0MT09 Q12972 238 252 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2 3.1509E-08 131.43 By MS/MS By MS/MS 3 1 0.85721 0.83784 33.956 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80765 0.88434 41.584 3 0 Median 0.90982 0.79379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47022000 24219000 22803000 0 0 0 0 0 0 44831000 23169000 21662000 2191500 1050200 1141300 0 0 0 0 0 0 35427 2775 37229 186442;186443;186444;186445 189253;189254;189255;189256;189257;189258 189255 6 VEGSFPVTMLPGDGVGPELMHAVK AAAHAASRSQAEDVRVEGSFPVTMLPGDGV LPGDGVGPELMHAVKEVFKAAAVPVEFQEH R V E V K E 1 0 0 1 0 0 2 4 1 0 2 1 2 1 3 1 1 0 0 4 0 0 24 0 2466.2287 A0A087WZN1;O43837;A0A087X2E5 A0A087WZN1 45 68 IDH3B Isocitrate dehydrogenase [NAD] subunit, mitochondrial;Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes no 3 0.041209 17.943 By MS/MS 1 0.91476 0.7829 NaN 1 Median NaN NaN NaN 0 0 Median 0.91476 0.7829 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5160400 2614000 2546400 0 0 0 5160400 2614000 2546400 0 0 0 0 0 0 0 0 0 0 0 0 35428 96 37230 186446 189259 189259 1 VEGTEPTTAFNLFVGNLNFNK EMAKQKAAPEAKKQKVEGTEPTTAFNLFVG TTAFNLFVGNLNFNKSAPELKTGISDVFAK K V E N K S 1 0 4 0 0 0 2 2 0 0 2 1 0 3 1 0 3 0 0 2 0 0 21 0 2311.1485 P19338 P19338 298 318 NCL Nucleolin yes yes 2;3 2.4905E-08 53.252 By MS/MS By MS/MS By matching By matching By MS/MS By matching 6 3 4 5 3 2 1.0248 0.99616 12.285 23 Median 0.97657 0.9553 7.8464 6 0 Median 1.017 0.88604 0.61034 3 0 Median 0.9799 1.032 10.506 4 0 Median 1.1328 0.99616 18.142 5 0 Median 1.0354 0.99994 6.109 3 0 Median 1.2294 1.0577 16.369 2 0 Median 56924000 27860000 29064000 23163000 11693000 11470000 4750600 2267800 2482800 12218000 5935900 6282100 666190 327990 338200 15857000 7498600 8358300 268920 136430 132490 35429 2063 37231 186447;186448;186449;186450;186451;186452;186453;186454;186455;186456;186457;186458;186459;186460;186461;186462;186463;186464;186465;186466;186467;186468;186469 189260;189261;189262;189263;189264;189265;189266;189267;189268;189269;189270;189271;189272 189262 13 VEGTLKGPEVDLKGPR KGPKVKGDFDVSVPKVEGTLKGPEVDLKGP EGTLKGPEVDLKGPRLDFEGPDAKLSGPSL K V E P R L 0 1 0 1 0 0 2 3 0 0 2 2 0 0 2 0 1 0 0 2 0 0 16 2 1693.9363 Q09666 Q09666 4874 4889 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 6.4102E-07 87.519 By MS/MS By MS/MS 3 4 0.8174 0.93437 15.401 7 Median 0.82554 0.88947 9.2332 3 0 Median NaN NaN NaN 0 0 Median 0.81013 1.0751 10.52 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73768000 37292000 36476000 25556000 11939000 13617000 0 0 0 48212000 25353000 22858000 0 0 0 0 0 0 0 0 0 35430 2749 37232 186470;186471;186472;186473;186474;186475;186476 189273;189274;189275;189276;189277;189278;189279;189280;189281 189281 9 VEHGSVALPAIMR KKSTVLQQQYNRVGKVEHGSVALPAIMRSG GKVEHGSVALPAIMRSGASGPENFQVGSMP K V E M R S 2 1 0 0 0 0 1 1 1 1 1 0 1 0 1 1 0 0 0 2 0 0 13 0 1378.7391 Q9Y490 Q9Y490 442 454 TLN1 Talin-1 yes yes 3 0.00023399 63.473 By MS/MS By MS/MS 1 1 0.98444 0.87127 0.035691 2 Median 0.92455 0.87149 NaN 1 1 Median 1.0482 0.87105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14286000 6813400 7472800 7559900 3693600 3866300 6726200 3119800 3606500 0 0 0 0 0 0 0 0 0 0 0 0 35431 4441 37233 186477;186478 189282;189283;189284 189284 3 VEHINLHPELDGQEYVVEFDFLGK EEGETADTVGCCSLRVEHINLHPELDGQEY LDGQEYVVEFDFLGKDSIRYYNKVPVEKRV R V E G K D 0 0 1 2 0 1 4 2 2 1 3 1 0 2 1 0 0 0 1 3 0 0 24 0 2826.3865 P11387 P11387 509 532 TOP1 DNA topoisomerase 1 yes yes 3;4 9.8353E-06 50.539 By MS/MS 2 1.2773 1.1384 22.497 2 Median NaN NaN NaN 0 0 Median 1.2773 1.1384 22.497 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2694900 1173800 1521100 0 0 0 2694900 1173800 1521100 0 0 0 0 0 0 0 0 0 0 0 0 35432 1962 37234 186479;186480 189285;189286 189286 2 VEHNQSYSQAGITETEWTSGSSK LKGRAKTPVTLKQRRVEHNQSYSQAGITET QAGITETEWTSGSSKGGPLQALTRESTRGS R V E S K G 1 0 1 0 0 2 3 2 1 1 0 1 0 0 0 5 3 1 1 1 0 0 23 0 2525.1306 P42167 P42167 217 239 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 3 5.6366E-43 178.19 By MS/MS By MS/MS By MS/MS By matching 4 4 3 3 1.3003 1.1577 15.703 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96431 0.93404 20.969 4 0 Median 1.3968 1.1901 4.9719 4 0 Median 0.98028 0.93929 6.5487 3 0 Median 1.4452 1.1987 1.6605 3 0 Median 124640000 60504000 64136000 0 0 0 0 0 0 62363000 31362000 31001000 18654000 7568500 11086000 38649000 19309000 19340000 4973300 2264500 2708800 35433 2307 37235 186481;186482;186483;186484;186485;186486;186487;186488;186489;186490;186491;186492;186493;186494 189287;189288;189289;189290;189291;189292;189293;189294;189295;189296;189297;189298 189288 12 VEHSDLSFSK DIEVDLLKNGERIEKVEHSDLSFSKDWSFY ERIEKVEHSDLSFSKDWSFYLLYYTEFTPT K V E S K D 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 3 0 0 0 1 0 0 10 0 1147.551 H0YLF3;F5H6I0;P61769 H0YLF3 21 30 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes no 2 0.019982 37.191 By matching By MS/MS 1 2 1.0797 1.0022 16.141 3 Median 1.0797 1.0151 NaN 1 0 Median 1.0213 0.87437 19.301 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4513700 2071800 2442000 927380 418880 508500 3586300 1652900 1933500 0 0 0 0 0 0 0 0 0 0 0 0 35434 1043 37236 186495;186496;186497 189299 189299 1 VEIAGPGFINVHLR ENITKHLPDNECIEKVEIAGPGFINVHLRK KVEIAGPGFINVHLRKDFVSEQLTSLLVNG K V E L R K 1 1 1 0 0 0 1 2 1 2 1 0 0 1 1 0 0 0 0 2 0 0 14 0 1520.8463 P54136 P54136 154 167 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.043889 14.432 By MS/MS 2 1.1514 1.0114 6.2758 2 Median NaN NaN NaN 0 0 Median 1.1514 1.0114 6.2758 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5669800 3250600 2419200 0 0 0 5669800 3250600 2419200 0 0 0 0 0 0 0 0 0 0 0 0 35435 2480 37237 186498;186499 189300 189300 1 VEIATLTR VLNKTMDVSKLSAEKVEIATLTRENGKTVI SKLSAEKVEIATLTRENGKTVIRVLKQKEV K V E T R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 8 0 901.52328 P25789;H0YMZ1;H0YN18;H0YL69 P25789 211 218 PSMA4 Proteasome subunit alpha type-4;Proteasome subunit alpha type yes no 2 0.0024268 133.6 By MS/MS By MS/MS 2 2 1.2687 1.1191 25.732 4 Median 1.5213 1.4288 29.764 2 0 Median 1.2304 1.0323 6.6414 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51136000 23506000 27630000 39791000 18617000 21174000 11345000 4888700 6456500 0 0 0 0 0 0 0 0 0 0 0 0 35436 2138 37238 186500;186501;186502;186503 189301;189302;189303;189304;189305;189306;189307 189301 7 VEILANDQGNR LGTTYSCVGVFQQGRVEILANDQGNRTTPS QQGRVEILANDQGNRTTPSYVAFTDTERLV R V E N R T 1 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1227.6208 P17066;P48741 P17066 28 38 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 2 4.172E-23 204.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 9 8 9 6 8 1.1533 1.0284 20.079 48 Median 1.1272 1.1039 9.3457 9 0 Median 1.1688 0.95542 5.255 9 0 Median 1.1556 1.1312 9.3907 7 0 Median 1.0546 0.87954 34.98 9 1 Median 1.1016 1.1339 10.91 6 0 Median 1.1941 0.94491 5.483 8 0 Median 2662500000 1144100000 1518400000 749130000 315580000 433540000 1145900000 487270000 658580000 479550000 213330000 266220000 105950000 46525000 59425000 106900000 48920000 57980000 75075000 32453000 42622000 35437 2035 37239 186504;186505;186506;186507;186508;186509;186510;186511;186512;186513;186514;186515;186516;186517;186518;186519;186520;186521;186522;186523;186524;186525;186526;186527;186528;186529;186530;186531;186532;186533;186534;186535;186536;186537;186538;186539;186540;186541;186542;186543;186544;186545;186546;186547;186548;186549;186550;186551;186552;186553 189308;189309;189310;189311;189312;189313;189314;189315;189316;189317;189318;189319;189320;189321;189322;189323;189324;189325;189326;189327;189328;189329;189330;189331;189332;189333;189334;189335;189336;189337;189338;189339;189340;189341;189342;189343;189344;189345;189346;189347;189348;189349;189350;189351;189352;189353;189354;189355;189356;189357;189358;189359;189360;189361;189362;189363;189364;189365;189366;189367;189368;189369;189370;189371;189372;189373;189374;189375;189376;189377;189378;189379;189380;189381;189382;189383;189384;189385;189386;189387;189388;189389;189390;189391;189392;189393;189394;189395;189396;189397;189398;189399;189400;189401 189314 94 VEILTALR LMVGKLERDLYTQQKVEILTALRKLGEKLT DLYTQQKVEILTALRKLGEKLTADDEAFLS K V E L R K 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 Q8WZA0;K7ES95 Q8WZA0 132 139 LZIC Protein LZIC yes no 2 0.0035517 89.296 By MS/MS By MS/MS By matching By matching 3 3 1 2 1.1649 0.98727 23.481 9 Median 0.77116 1.1921 27.464 3 0 Plateau 1.1649 0.98727 10.796 3 0 Median 1.2358 1.1606 NaN 1 0 Median 1.218 1.0285 45.433 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22997000 10102000 12895000 16351000 7235300 9116000 4417300 2046400 2370900 1743600 593960 1149700 485020 226150 258870 0 0 0 0 0 0 35438 3525 37240 186554;186555;186556;186557;186558;186559;186560;186561;186562 189402;189403;189404;189405;189406 189402 5 VEILTALRK LMVGKLERDLYTQQKVEILTALRKLGEKLT LYTQQKVEILTALRKLGEKLTADDEAFLSA K V E R K L 1 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 9 1 1041.6546 Q8WZA0;K7ES95 Q8WZA0 132 140 LZIC Protein LZIC yes no 2 0.0030435 81.548 By MS/MS 1 1.6777 1.7569 NaN 1 Median 1.6777 1.7569 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6408300 2307800 4100500 6408300 2307800 4100500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35439 3525 37241 186563 189407 189407 1 VEIMPPPPKPK YLEKQTGAILPPSPKVEIMPPPPKPKDMTV PSPKVEIMPPPPKPKDMTVPILVSKPPVFT K V E P K D 0 0 0 0 0 0 1 0 0 1 0 2 1 0 5 0 0 0 0 1 0 0 11 1 1231.6999 P11182;Q5VVL7 P11182 223 233 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes no 3 0.058396 47.559 By MS/MS 1 1.0549 1.0019 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0549 1.0019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4244300 2290600 1953700 0 0 0 0 0 0 0 0 0 4244300 2290600 1953700 0 0 0 0 0 0 35440 1955 37242 186564 189408 189408 0 VEISNAIK RLLYDIVFKHFKRNKVEISNAIKKTFPFLE KHFKRNKVEISNAIKKTFPFLEGLRDRDLI K V E I K K 1 0 1 0 0 0 1 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 8 0 872.49673 P23497;C9JBL0;E9PHV6 P23497 62 69 SP100 Nuclear autoantigen Sp-100 yes no 2 0.047859 35.201 By MS/MS 1 0.79847 0.80103 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79847 0.80103 NaN 1 0 Median NaN NaN NaN 0 0 Median 30924000 15473000 15451000 0 0 0 0 0 0 0 0 0 0 0 0 30924000 15473000 15451000 0 0 0 35441 2114 37243 186565 189409 189409 1 VEITPESILSALSK ATTTSHNPLANILSKVEITPESILSALSKT KVEITPESILSALSKTQTQSAPALQGLSSL K V E S K T 1 0 0 0 0 0 2 0 0 2 2 1 0 0 1 3 1 0 0 1 0 0 14 0 1485.829 Q5VT52 Q5VT52 514 527 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.009029 34.887 By MS/MS By matching By MS/MS By matching 2 4 1 1 1.0286 0.9775 8.52 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8307 0.89513 15.512 2 0 Median 1.11 0.97839 7.5503 4 0 Median 0.90745 0.93331 NaN 1 0 Median 1.1343 0.98253 NaN 1 0 Median 6063400 3189400 2874000 0 0 0 0 0 0 3912800 2104800 1808000 420300 206590 213710 1593100 819060 774040 137220 58990 78232 35442 3110 37244 186566;186567;186568;186569;186570;186571;186572;186573 189410;189411;189412;189413 189410 4 VEITYTPSDGTQK DQYRATDFVVPGPGKVEITYTPSDGTQKVT GKVEITYTPSDGTQKVTYLVHNFEEGGGVA K V E Q K V 0 0 0 1 0 1 1 1 0 1 0 1 0 0 1 1 3 0 1 1 0 0 13 0 1437.6987 O75874 O75874 152 164 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic yes yes 2 5.9879E-07 105.86 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.83291 0.85681 27.179 6 Median 0.75887 0.70619 10.86 2 0 Median 1.0959 0.93545 8.7271 2 0 Median 0.83981 0.83473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82101 1.4443 NaN 1 0 Median 38078000 19776000 18302000 24798000 13626000 11172000 10017000 4223400 5793600 2737200 1563900 1173300 0 0 0 0 0 0 526620 363080 163540 35443 1701 37245 186574;186575;186576;186577;186578;186579 189414;189415;189416;189417;189418;189419;189420 189415 7 VEKDGLILTSR DKMMNGGHYTYSENRVEKDGLILTSRGPGT SENRVEKDGLILTSRGPGTSFEFALAIVEA R V E S R G 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 11 1 1229.698 Q99497;K7ELW0;K7EN27 Q99497 146 156 PARK7 Protein deglycase DJ-1 yes no 3 0.0002089 65.295 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.3007 1.2182 4.5096 5 Median 1.168 1.2182 NaN 1 0 Median 1.3521 1.2231 1.9298 2 0 Median 1.1256 1.157 NaN 1 0 Median 1.4795 1.3096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28688000 12109000 16579000 19023000 8087100 10936000 6926700 2767500 4159200 2182100 1027100 1154900 556030 227450 328580 0 0 0 0 0 0 35444 3749 37246 186580;186581;186582;186583;186584 189421;189422;189423;189424;189425 189422 5 VEKEEAGGGISEEEAAQYDR ______________________________ AGGGISEEEAAQYDRQIRLWGLEAQKRLRA M V E D R Q 3 1 0 1 0 1 6 3 0 1 0 1 0 0 0 1 0 0 1 1 0 0 20 1 2165.9713 Q9UBE0;M0QZS6;B3KNJ4;A0A590UK93;A0A590UKC5;M0R375 Q9UBE0 2 21 SAE1 SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed yes no 3 1.501E-06 49.973 By MS/MS By MS/MS By MS/MS 1 1 1 0.71495 0.71708 24.715 2 Median 0.56202 0.6021 NaN 1 1 Median 0.9095 0.85402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9142400 4886500 4255900 4946200 2336800 2609400 4196200 2549700 1646500 0 0 0 0 0 0 0 0 0 0 0 0 35445 4237 37247 186585;186586;186587 189426;189427;189428;189429 189429 4 VELAEEDDGEK DLLNHAFFQEETGVRVELAEEDDGEKIAIK TGVRVELAEEDDGEKIAIKLWLRIEDIKKL R V E E K I 1 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1232.5408 F5GWT4;Q9H4A3 F5GWT4 487 497 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 0.00014526 88.681 By MS/MS 1 0.98511 0.85848 NaN 1 Median NaN NaN NaN 0 0 Median 0.98511 0.85848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3330700 1664000 1666700 0 0 0 3330700 1664000 1666700 0 0 0 0 0 0 0 0 0 0 0 0 35446 1001 37248 186588 189430;189431 189431 2 VELAQLQEEWNEHNAK ERRAKQTELRLLEQKVELAQLQEEWNEHNA ELAQLQEEWNEHNAKIIKYIRTKTKPHLFY K V E A K I 2 0 2 0 0 2 4 0 1 0 2 1 0 0 0 0 0 1 0 1 0 0 16 0 1936.9279 Q9H307 Q9H307 213 228 PNN Pinin yes yes 2;3 3.6154E-05 53.981 By matching By MS/MS By matching 1 4 3 1.1539 1.0391 17.513 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2701 1.3644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0393 1.0636 20.264 4 0 Median 1.2488 1.0375 5.2608 3 0 Plateau 41800000 20286000 21514000 0 0 0 0 0 0 2327200 1037700 1289500 0 0 0 37950000 18581000 19370000 1522600 667930 854650 35447 3950 37249 186589;186590;186591;186592;186593;186594;186595;186596 189432;189433 189432 2 VELDNMPLR GFIRLETRTLAEIAKVELDNMPLRGKQLRV LAEIAKVELDNMPLRGKQLRVRFACHSASL K V E L R G 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 9 0 1085.5539 Q15233;C9JYS8;C9IZL7;C9J4X2 Q15233 127 135 NONO Non-POU domain-containing octamer-binding protein yes no 2 1.9191E-10 170.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 9 9 9 7 1.1201 0.98489 35.898 38 Median 1.068 1.0107 NaN 1 1 Median 1.2923 1.1002 82.129 3 0 Plateau 0.8805 0.84415 35.44 9 1 Median 1.2462 1.0602 10.557 9 1 Median 0.91633 0.9311 28.09 9 0 Median 1.2103 1.02 40.508 7 1 Median 1544800000 777070000 767750000 17240000 8310800 8929700 74354000 36757000 37597000 862170000 452680000 409480000 319520000 141480000 178040000 200810000 98628000 102190000 70733000 39210000 31523000 35448 2935 37250;37251 186597;186598;186599;186600;186601;186602;186603;186604;186605;186606;186607;186608;186609;186610;186611;186612;186613;186614;186615;186616;186617;186618;186619;186620;186621;186622;186623;186624;186625;186626;186627;186628;186629;186630;186631;186632;186633;186634 189434;189435;189436;189437;189438;189439;189440;189441;189442;189443;189444;189445;189446;189447;189448;189449;189450;189451;189452;189453;189454;189455;189456;189457;189458;189459;189460;189461;189462;189463;189464;189465;189466;189467;189468;189469;189470;189471;189472;189473;189474;189475;189476;189477;189478;189479;189480;189481;189482;189483;189484;189485;189486;189487 189435 1623 54 VELFFKDDANNDPQWSEEQLIAAK RNPGVKEGYKFYPPKVELFFKDDANNDPQW NNDPQWSEEQLIAAKFCFAGLLIGQTEVDI K V E A K F 3 0 2 3 0 2 3 0 0 1 2 2 0 2 1 1 0 1 0 1 0 0 24 1 2806.345 P22234;E9PBS1;D6RF62 P22234 126 149 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 3 0.0023919 25.408 By matching By MS/MS 1 1 0.79995 0.80854 1.9148 2 Median 0.8212 0.79767 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77926 0.81956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4385700 2375300 2010400 873180 526000 347180 0 0 0 3512500 1849300 1663200 0 0 0 0 0 0 0 0 0 35449 909 37252 186635;186636 189488;189489 189489 2 VELGEKPLR VRGSNPHLQTFTFTRVELGEKPLRIIGVKV TFTFTRVELGEKPLRIIGVKVHPGQRKEQI R V E L R I 0 1 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1039.6026 Q9BSJ8;F8VZB1 Q9BSJ8 184 192 ESYT1 Extended synaptotagmin-1 yes no 2 0.058522 46.426 By MS/MS 1 0.99509 1.0307 NaN 1 Median 0.99509 1.0307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1734400 850390 883960 1734400 850390 883960 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35450 3816 37253 186637 189490 189490 1 VELQELNDR DAINTEFKNTRTNEKVELQELNDRFANYID TRTNEKVELQELNDRFANYIDKVRFLEQQN K V E D R F 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1114.5619 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 105 113 VIM;DES Vimentin;Desmin yes no 2 3.0055E-18 164.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 2 4 1.0386 0.96688 19.524 14 Median 0.92517 0.87898 NaN 1 1 Median 1.3498 1.1531 4.2099 2 1 Median 1.051 1.0378 5.689 2 0 Median 1.1927 0.99466 7.0976 3 0 Median 0.96148 0.98516 9.5765 2 0 Median 0.88202 0.70228 13.281 4 2 Median 246550000 114600000 131950000 15633000 7265200 8367700 70480000 28301000 42179000 38709000 18351000 20357000 30516000 15484000 15032000 37501000 18171000 19330000 53709000 27028000 26680000 35451 1907 37254 186638;186639;186640;186641;186642;186643;186644;186645;186646;186647;186648;186649;186650;186651;186652 189491;189492;189493;189494;189495;189496;189497;189498;189499;189500;189501;189502;189503;189504;189505;189506;189507;189508;189509 189492 19 VELQQGLR VGFSSQLYGYALLGKVELQQGLRAVYHNMP GYALLGKVELQQGLRAVYHNMPLIWKPGYL K V E L R A 0 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 941.52943 G5EA06;Q92552;D6RH20 G5EA06 178 185 MRPS27 28S ribosomal protein S27, mitochondrial yes no 2 0.003424 97.071 By MS/MS By MS/MS 1 1 1.1326 1.0549 24.624 2 Median 0.88432 0.8863 NaN 1 0 Median 1.4505 1.2555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6193900 2810200 3383700 2576300 1313900 1262400 3617600 1496200 2121400 0 0 0 0 0 0 0 0 0 0 0 0 35452 1131 37255 186653;186654 189510;189511;189512 189510 3 VELSDVQNPAISITENVLHFK PHVYWAQRHRELYLRVELSDVQNPAISITE QNPAISITENVLHFKAQGHGAKGDNVYEFH R V E F K A 1 0 2 1 0 1 2 0 1 2 2 1 0 1 1 2 1 0 0 3 0 0 21 0 2352.2325 Q9P035 Q9P035 23 43 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 3 1.8987E-09 60.034 By MS/MS By MS/MS By matching By matching 1 5 1 1 1.0808 0.99288 9.4209 8 Median 0.9216 0.91523 NaN 1 0 Median 1.0907 0.97729 7.6514 5 0 Median 0.98494 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4063 1.1515 NaN 1 0 Median 86031000 39002000 47028000 4463700 2195400 2268300 80631000 36363000 44268000 516640 286470 230160 0 0 0 0 0 0 419200 156840 262360 35453 4200 37256 186655;186656;186657;186658;186659;186660;186661;186662 189513;189514;189515;189516 189514 4 VELSPMQK DVFKNMPSKTELIVRVELSPMQKKYYKYIL KTELIVRVELSPMQKKYYKYILTRNFEALN R V E Q K K 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 8 0 930.48445 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q12873 Q14839 976 983 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 2.0584E-05 117.17 By MS/MS By MS/MS 2 1 0.87949 0.96313 2.281 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87615 0.96682 0.54146 2 2 Median 1.0272 0.92989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25949000 12439000 13510000 0 0 0 0 0 0 23867000 11396000 12471000 2082700 1043300 1039400 0 0 0 0 0 0 35454 246;2766 37257 186663;186664;186665 189517;189518;189519;189520 189518 4 VELSQLR GKKKEELLKQLDDLKVELSQLRVAKVTGGA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K V E L R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 843.48142 P42766;F2Z388 P42766 26 32 RPL35 60S ribosomal protein L35 yes no 2 0.0016661 114.02 By MS/MS 1 2.4472 2.029 NaN 1 Median NaN NaN NaN 0 0 Median 2.4472 2.029 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7990300 2225300 5765000 0 0 0 7990300 2225300 5765000 0 0 0 0 0 0 0 0 0 0 0 0 35455 2316 37258 186666 189521 189521 1 VELSTGMPR VRGLDGKVICGSRVRVELSTGMPRRSRFDR CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V E P R R 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 988.50117 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 79 87 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 3 0.90668 0.81307 11.88 9 Median 0.9102 0.84987 NaN 1 0 Median 0.90668 0.7565 NaN 1 0 Median 0.8025 0.78417 NaN 1 0 Median 0.99283 0.82821 NaN 1 0 Median 0.89055 0.8947 1.9738 2 0 Median 0.90895 0.76068 15.38 3 0 Median 86271000 43448000 42823000 7981900 4231700 3750300 4388000 2104800 2283200 9390300 5269500 4120800 7225200 3591400 3633800 46518000 22999000 23520000 10767000 5251600 5515000 35456 214 37259 186667;186668;186669;186670;186671;186672;186673;186674;186675;186676 189522;189523;189524;189525;189526;189527;189528;189529;189530;189531;189532;189533;189534;189535;189536;189537;189538 189527 17 VELSTVNVR ENTKKDLLGIIKGMKVELSTVNVRTTKPPK IIKGMKVELSTVNVRTTKPPKRRPLKSLEA K V E V R T 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 3 0 0 9 0 1015.5662 Q92665 Q92665 108 116 MRPS31 28S ribosomal protein S31, mitochondrial yes yes 2 0.0054443 71.501 By MS/MS By MS/MS 1 1 0.96768 0.96107 NaN 1 Median 0.96768 0.96107 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4504600 2035700 2468900 4504600 2035700 2468900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35457 3548 37260 186677;186678 189539;189540 189539 2 VELTITPDFQWDEK ELSVHLQPITRSTLKVELTITPDFQWDEKV KVELTITPDFQWDEKVHGSSEAFWILVEDV K V E E K V 0 0 0 2 0 1 2 0 0 1 1 1 0 1 1 0 2 1 0 1 0 0 14 0 1719.8356 O75643;A0A494C1A5 O75643 1200 1213 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00070644 63.283 By MS/MS By MS/MS 1 1 1.0056 0.99997 12.686 2 Median NaN NaN NaN 0 0 Median 1.2329 1.0938 NaN 1 0 Median 0.82018 0.91418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7423400 3358000 4065400 0 0 0 4305800 1640500 2665300 3117600 1717500 1400100 0 0 0 0 0 0 0 0 0 35458 1688 37261 186679;186680 189541;189542;189543 189542 3 VELVPPTPAEIPR TYSKPRLATFWYYAKVELVPPTPAEIPRAI AKVELVPPTPAEIPRAIQSLKKIVNSAQTG K V E P R A 1 1 0 0 0 0 2 0 0 1 1 0 0 0 4 0 1 0 0 2 0 0 13 0 1416.7977 O75964;E9PN17;A0A3B3ITX4 O75964 36 48 ATP5L ATP synthase subunit g, mitochondrial yes no 2 6.603E-07 104.82 By MS/MS By MS/MS By matching 1 3 1 0.72121 0.58728 8.1803 5 Median 0.54308 0.52606 NaN 1 0 Median 0.74638 0.60369 6.4649 3 1 Median 0.58746 0.58728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66553000 39341000 27212000 34352000 21407000 12945000 31055000 17114000 13941000 1147000 820240 326720 0 0 0 0 0 0 0 0 0 35459 1713 37262 186681;186682;186683;186684;186685 189544;189545;189546;189547;189548;189549;189550;189551;189552;189553;189554;189555;189556;189557;189558;189559 189553 16 VELVTGEEDEK SDDIHFEPVVQMPEKVELVTGEEDEKVLYS MPEKVELVTGEEDEKVLYSQRVKLFRFDAE K V E E K V 0 0 0 1 0 0 4 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 11 0 1246.5929 P49792 P49792 2023 2033 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00083547 86.624 By MS/MS By MS/MS By MS/MS 1 1 2 1.1074 1.0951 11.376 4 Median NaN NaN NaN 0 0 Median 1.3612 1.1858 NaN 1 1 Median 0.96714 1.0386 NaN 1 1 Median 1.1074 1.0328 15.772 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11397000 5993300 5403400 0 0 0 1030000 394540 635510 6235800 3560100 2675800 4130800 2038700 2092200 0 0 0 0 0 0 35460 2401 37263 186686;186687;186688;186689 189560;189561;189562;189563 189562 4 VELVTGEEDEKVLYSQR SDDIHFEPVVQMPEKVELVTGEEDEKVLYS LVTGEEDEKVLYSQRVKLFRFDAEVSQWKE K V E Q R V 0 1 0 1 0 1 4 1 0 0 2 1 0 0 0 1 1 0 1 3 0 0 17 1 1993.0004 P49792 P49792 2023 2039 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 7.7082E-14 116.35 By MS/MS 1 0.52851 0.61397 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52851 0.61397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29032000 15379000 13652000 0 0 0 0 0 0 29032000 15379000 13652000 0 0 0 0 0 0 0 0 0 35461 2401 37264 186690 189564;189565 189564 2 VEMALEALR AAKVESEQHGDRLPRVEMALEALRNVIKYN GDRLPRVEMALEALRNVIKYNPGSESECIG R V E L R N 2 1 0 0 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1030.5481 O75165 O75165 1749 1757 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.039605 33.797 By MS/MS 1 1.3017 1.0913 NaN 1 Median NaN NaN NaN 0 0 Median 1.3017 1.0913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1729600 657580 1072100 0 0 0 1729600 657580 1072100 0 0 0 0 0 0 0 0 0 0 0 0 35462 1653 37265 186691 189566 189566 1 VEMLETER EAATLAANNTQLQARVEMLETERGQQEAKL NTQLQARVEMLETERGQQEAKLLAERGHFE R V E E R G 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 8 0 1005.4801 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 436 443 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.0664E-21 166.96 By MS/MS By MS/MS By matching By MS/MS By MS/MS 3 5 2 2 1 0.99191 0.98619 20.626 12 Median NaN NaN NaN 0 0 Median 1.3517 1.219 13.702 3 0 Median 0.93384 0.95143 24.4 4 2 Median 1.1382 0.99965 30.826 2 0 Median 0.9521 0.97911 12.752 2 0 Median 0.91429 0.75599 NaN 1 0 Median 137780000 69085000 68692000 0 0 0 9249300 3827800 5421500 59172000 30478000 28694000 7115500 3518300 3597200 52841000 26442000 26399000 9398700 4818100 4580600 35463 2905;77 37266;37267 186692;186693;186694;186695;186696;186697;186698;186699;186700;186701;186702;186703;186704 189567;189568;189569;189570;189571;189572;189573;189574;189575;189576;189577 189571 39 11 VEMLETERGQQEAK EAATLAANNTQLQARVEMLETERGQQEAKL RVEMLETERGQQEAKLLAERGHFEEEKQQL R V E A K L 1 1 0 0 0 2 4 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 14 1 1646.7934 A0A087WY61;F5H4J1;F5H6Y5;Q14980 Q14980 436 449 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 1.2548E-22 194.24 By matching By MS/MS By MS/MS By MS/MS 1 2 3 1 0.96288 1.086 12.597 7 Median 1.179 1.2072 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0032 1.2026 5.8327 2 0 Median NaN NaN NaN 0 0 Median 0.9475 1.086 9.8026 3 0 Plateau 1.0476 0.93055 NaN 1 0 Median 80191000 40291000 39900000 939780 432480 507300 0 0 0 20713000 9780500 10932000 0 0 0 56364000 28920000 27444000 2173900 1157400 1016600 35464 2905;77 37268 186705;186706;186707;186708;186709;186710;186711 189578;189579;189580;189581;189582;189583;189584;189585;189586;189587 189584 10 VEMQPTELVSK EKPSVSKEEKPSVSKVEMQPTELVSKEREE SVSKVEMQPTELVSKEREEKVKETQEDKLE K V E S K E 0 0 0 0 0 1 2 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 11 0 1259.6431 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3;E9PQD2 O43491 161 171 EPB41L2 Band 4.1-like protein 2 yes no 2 0.00048871 68.657 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.9869 0.92693 4.6322 4 Median 0.97177 0.93985 NaN 1 0 Median 1.0023 0.85027 NaN 1 0 Median 0.8621 0.92017 NaN 1 0 Median 1.0824 0.93373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38818000 19299000 19520000 12439000 5818000 6620800 7292200 3594300 3697900 14612000 7755300 6857200 4475000 2131000 2344000 0 0 0 0 0 0 35465 1573 37269 186712;186713;186714;186715 189588;189589;189590 189590 3 VEMYSGSDDDDDFNKLPK LEDKDSKSKKTAKPKVEMYSGSDDDDDFNK YSGSDDDDDFNKLPKKAKGKAQKSNKKWDG K V E P K K 0 0 1 5 0 0 1 1 0 0 1 2 1 1 1 2 0 0 1 1 0 0 18 1 2073.8837 A0A087WUT6;O60841 A0A087WUT6 131 148 EIF5B Eukaryotic translation initiation factor 5B yes no 3 0.0086171 23.799 By MS/MS 1 1.0518 1.0107 NaN 1 Median 1.0518 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13431000 5847000 7584100 13431000 5847000 7584100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35466 35 37270 186716 189591 189591 1 VENDWHRVYLVR EKQCYLQQVKQFCIRVENDWHRVYLVRKLS CIRVENDWHRVYLVRKLSSQRGMEFVQGLS R V E V R K 0 2 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 3 0 0 12 1 1584.8161 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 4319 4330 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.064596 13.964 By MS/MS 1 1.3169 1.1905 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3169 1.1905 NaN 1 0 Median 3511200 1070200 2441000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3511200 1070200 2441000 35467 189 37271 186717 189592 189592 1 VENEDMNKDQILLEK YENFRSERLKRGGRKVENEDMNKDQILLEK VENEDMNKDQILLEKEAELRRMQEMIARMQ K V E E K E 0 0 2 2 0 1 3 0 0 1 2 2 1 0 0 0 0 0 0 1 0 0 15 1 1816.8877 Q15019;B5MCX3;H7C2Y0 Q15019 311 325 SEPT2 Septin-2 yes no 2;3 0.00011112 56.147 By MS/MS By MS/MS 2 1 0.95267 1.0236 6.2906 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94599 1.0309 0.99556 2 0 Median 1.0389 0.92508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36329000 17660000 18669000 0 0 0 0 0 0 30804000 14967000 15838000 5524500 2692900 2831600 0 0 0 0 0 0 35468 2914 37272 186718;186719;186720 189593;189594;189595 189595 3 VENEKTEGTNLK QLDSLEAALQKQKQKVENEKTEGTNLKREN KQKVENEKTEGTNLKRENQRLMEICESLEK K V E L K R 0 0 2 0 0 0 3 1 0 0 1 2 0 0 0 0 2 0 0 1 0 0 12 1 1360.6834 P49454 P49454 55 66 CENPF Centromere protein F yes yes 3 0.013621 26.274 By MS/MS 1 1.3486 1.2554 NaN 1 Median NaN NaN NaN 0 0 Median 1.3486 1.2554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29353000 14346000 15007000 0 0 0 29353000 14346000 15007000 0 0 0 0 0 0 0 0 0 0 0 0 35469 2383 37273 186721 189596;189597 189596 2 VENFEAAVHFYGK AEAERLKTEGNEQMKVENFEAAVHFYGKAI MKVENFEAAVHFYGKAIELNPANAVYFCNR K V E G K A 2 0 1 0 0 0 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 13 0 1509.7252 O43765;K7EMD6 O43765 104 116 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha yes no 2 0.0014451 53.683 By MS/MS By matching 2 1 0.98556 0.91878 5.7566 3 Plateau 0.92763 0.87551 6.8617 2 0 Median 0.98556 0.82977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16441000 8395100 8045600 13594000 7053700 6540700 2846300 1341400 1504900 0 0 0 0 0 0 0 0 0 0 0 0 35470 1588 37274 186722;186723;186724 189598;189599 189598 2 VENFIQK KLVTIKFKWWGLQSKVENFIQKQEKRIFTN KWWGLQSKVENFIQKQEKRIFTNFHRQLFC K V E Q K Q 0 0 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 876.47052 P48739;A0A0A0MSW4 P48739 209 215 PITPNB Phosphatidylinositol transfer protein beta isoform yes no 2 0.014432 74.415 By MS/MS By MS/MS 2 1 1.0683 0.92225 11.647 3 Median 1.0827 1.0119 13.12 2 0 Median 1.0683 0.89572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14594000 7067700 7526600 10543000 5305100 5237700 4051400 1762600 2288800 0 0 0 0 0 0 0 0 0 0 0 0 35471 2368 37275 186725;186726;186727 189600;189601;189602;189603 189603 4 VENMVDQLLR DTPLIYKAVPSWFVRVENMVDQLLRNNDLC SWFVRVENMVDQLLRNNDLCYWVPELVREK R V E L R N 0 1 1 1 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1215.6282 P41252;A0A0A0MSX9;J3KR24 P41252 419 428 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.00025925 127.3 By MS/MS By MS/MS 1 1 1.1702 1.0472 4.5343 2 Median 1.1236 1.0813 NaN 1 0 Median 1.2187 1.0141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39135000 18727000 20408000 21677000 10665000 11012000 17458000 8061800 9396300 0 0 0 0 0 0 0 0 0 0 0 0 35472 2302 37276 186728;186729 189604;189605;189606 189606 3 VENPFDFMENISLEGK ADRLMLELGFSKVFRVENPFDFMENISLEG ENPFDFMENISLEGKTNFFEKRVGEYQRMG R V E G K T 0 0 2 1 0 0 3 1 0 1 1 1 1 2 1 1 0 0 0 1 0 0 16 0 1867.8662 P31350 P31350 343 358 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes yes 2 1.4513E-10 112.51 By MS/MS 1 0.90201 0.77744 NaN 1 Median NaN NaN NaN 0 0 Median 0.90201 0.77744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1840900 903900 936990 0 0 0 1840900 903900 936990 0 0 0 0 0 0 0 0 0 0 0 0 35473 2203 37277 186730 189607;189608 189608 2 VENQENVSNLVIEDTELK KKEPAVLELEGKKWRVENQENVSNLVIEDT QENVSNLVIEDTELKQVAYIYKCVNTTLQI R V E L K Q 0 0 3 1 0 1 4 0 0 1 2 1 0 0 0 1 1 0 0 3 0 0 18 0 2072.0273 Q01518 Q01518 331 348 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 1.0987E-05 53.252 By MS/MS By matching By MS/MS 2 1 1 0.99741 0.94126 8.9081 4 Median 0.99764 0.94816 10.177 2 0 Median 0.99788 0.85503 NaN 1 0 Median 0.99694 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17324000 8181900 9142000 10203000 4625100 5577400 2480900 1118500 1362400 4640400 2438300 2202200 0 0 0 0 0 0 0 0 0 35474 2686 37278 186731;186732;186733;186734 189609;189610;189611;189612 189609 4 VEPADASGTEK TFVVSQPLNYRGGARVEPADASGTEKAFEP GGARVEPADASGTEKAFEPATGRVIATFTC R V E E K A 2 0 0 1 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1102.5142 P49189 P49189 20 30 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.018812 35.511 By MS/MS By matching 1 1 1.0686 0.99517 17.65 2 Median 0.89973 0.87841 NaN 1 0 Median 1.2692 1.1275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2083200 1015900 1067300 1536900 770460 766460 546290 245440 300850 0 0 0 0 0 0 0 0 0 0 0 0 35475 2372 37279 186735;186736 189613;189614 189614 2 VEPATPLAVR KSKHEEEAVQKQKPKVEPATPLAVRFGLPD KQKPKVEPATPLAVRFGLPDSRRHGESICL K V E V R F 2 1 0 0 0 0 1 0 0 0 1 0 0 0 2 0 1 0 0 2 0 0 10 0 1051.6026 Q9H2M9 Q9H2M9 368 377 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.035967 32.32 By matching By MS/MS 1 1 0.71688 0.65831 24.713 2 Median 0.5605 0.55277 NaN 1 0 Median 0.91689 0.78402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5514900 2963100 2551800 2943000 1737000 1206000 2571900 1226000 1345800 0 0 0 0 0 0 0 0 0 0 0 0 35476 3945 37280 186737;186738 189615 189615 1 VEPAVIEAQNAVK VIADKQMSVKEDLDKVEPAVIEAQNAVKSI DKVEPAVIEAQNAVKSIKKQHLVEVRSMAN K V E V K S 3 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 0 3 0 0 13 0 1366.7456 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3285 3297 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0009775 61.353 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.87929 0.87489 15.428 4 Median 0.76429 0.75863 NaN 1 0 Median 1.1823 1.0325 NaN 1 0 Median 0.72609 0.78455 NaN 1 0 Median 1.0116 0.97564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12104000 6178100 5926100 3234800 1471300 1763500 2589700 1252900 1336800 3922600 2421100 1501500 2357100 1032900 1324300 0 0 0 0 0 0 35477 2865 37281 186739;186740;186741;186742 189616;189617;189618;189619 189617 4 VEPAVSSVVNSIQVLTSK SSPKDKKKKEKKVAKVEPAVSSVVNSIQVL AVSSVVNSIQVLTSKAAILETAPKEVPMVV K V E S K A 1 0 1 0 0 1 1 0 0 1 1 1 0 0 1 4 1 0 0 5 0 0 18 0 1856.0255 Q9P2E9;A2A2S5 Q9P2E9 149 166 RRBP1 Ribosome-binding protein 1 yes no 2 0.047176 20.857 By MS/MS By matching By matching 2 2 2 0.85572 0.83717 13.704 6 Median 0.86915 0.83717 6.9227 2 0 Median 0.81119 0.71102 11.43 2 0 Median 0.85572 0.93522 0.047343 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5738700 3003200 2735500 3697000 1935900 1761100 1585000 836310 748690 456690 230990 225700 0 0 0 0 0 0 0 0 0 35478 4222 37282 186743;186744;186745;186746;186747;186748 189620 189620 1 VEPGLGADNSVVR ASKIVGPSGAAVPCKVEPGLGADNSVVRFL CKVEPGLGADNSVVRFLPREEGPYEVEVTY K V E V R F 1 1 1 1 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 3 0 0 13 0 1311.6783 P21333;Q60FE5;A0A087WWY3 P21333 1020 1032 FLNA Filamin-A no no 2 5.735E-07 141.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 0.82376 0.70166 15.853 9 Median 0.94978 0.9062 0.67221 2 0 Median 0.81764 0.67165 6.1818 2 0 Median 0.69901 0.77001 24.717 2 1 Median 0.80913 0.70861 1.9663 2 0 Median NaN NaN NaN 0 0 Median 0.7527 0.62587 NaN 1 1 Median 407570000 219260000 188320000 54345000 27435000 26910000 312850000 168060000 144790000 25403000 15807000 9596800 12302000 6615300 5686400 0 0 0 2671200 1335600 1335600 35479 2088;3120 37283 186749;186750;186751;186752;186753;186754;186755;186756;186757 189621;189622;189623;189624;189625;189626;189627;189628;189629;189630;189631;189632;189633;189634;189635;189636;189637;189638;189639;189640;189641;189642;189643 189622 23 VEPHATIAEIK ILDAKTREKLCFLDKVEPHATIAEIKNLFT FLDKVEPHATIAEIKNLFTKTHPQWYPARQ K V E I K N 2 0 0 0 0 0 2 0 1 2 0 1 0 0 1 0 1 0 0 1 0 0 11 0 1206.6608 Q9NZ01;M0R2N5;M0R3C3 Q9NZ01 23 33 TECR Very-long-chain enoyl-CoA reductase yes no 2;3 0.00016383 80.916 By MS/MS 6 0.95663 0.84614 11.302 4 Median NaN NaN NaN 0 0 Median 0.95663 0.84614 11.302 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43454000 20080000 23374000 0 0 0 43454000 20080000 23374000 0 0 0 0 0 0 0 0 0 0 0 0 35480 4181 37284 186758;186759;186760;186761;186762;186763 189644;189645;189646;189647;189648;189649 189644 6 VEPLDFGGTQK LDLISYGQDWRKYYKVEPLDFGGTQKQKQL KYYKVEPLDFGGTQKQKQLFIGGEACLWGE K V E Q K Q 0 0 0 1 0 1 1 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 11 0 1189.5979 P07686;Q5URX0;H0YA83;H0Y9B6 P07686 466 476 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes no 2 0.045866 45.368 By MS/MS 1 1.3907 1.1842 NaN 1 Median NaN NaN NaN 0 0 Median 1.3907 1.1842 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1479600 590760 888820 0 0 0 1479600 590760 888820 0 0 0 0 0 0 0 0 0 0 0 0 35481 1888 37285 186764 189650 189650 1 VEPLEEAIPLPPTK EPEEGVTVESQPQVKVEPLEEAIPLPPTKK KVEPLEEAIPLPPTKKRKKEKGQMAMMEPG K V E T K K 1 0 0 0 0 0 3 0 0 1 2 1 0 0 4 0 1 0 0 1 0 0 14 0 1531.8498 O15446 O15446 315 328 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 2 0.010499 33.875 By MS/MS 1 0.36935 0.39228 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36935 0.39228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2104000 1477200 626860 0 0 0 0 0 0 2104000 1477200 626860 0 0 0 0 0 0 0 0 0 35482 1548 37286 186765 189651 189651 1 VEPLRNELQK KWAIAQLNYADMLKRVEPLRNELQKLEDDA DMLKRVEPLRNELQKLEDDAKDNQQKANEV R V E Q K L 0 1 1 0 0 1 2 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 10 1 1224.6826 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3409 3418 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 0.0029047 95.358 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 1.0441 0.97684 10.173 8 Median 0.85162 0.88269 5.9457 2 0 Median 1.113 1.027 6.795 2 0 Median 0.85014 0.9849 NaN 1 0 Median 1.0466 0.97489 11.77 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82461000 40951000 41510000 18772000 9199900 9572200 39714000 19053000 20661000 7314000 4608200 2705800 16661000 8089300 8571800 0 0 0 0 0 0 35483 2865 37287 186766;186767;186768;186769;186770;186771;186772;186773 189652;189653;189654;189655;189656;189657;189658;189659;189660;189661;189662;189663 189659 12 VEPMTYLGSSQNEVLNTKPDYQK ILSRGSTEAKITEVKVEPMTYLGSSQNEVL SSQNEVLNTKPDYQKILQNQSKVFDCMELV K V E Q K I 0 0 2 1 0 2 2 1 0 0 2 2 1 0 2 2 2 0 2 2 0 0 23 1 2640.2741 Q9H410;Q5JW54 Q9H410 254 276 DSN1 Kinetochore-associated protein DSN1 homolog yes no 3 5.9299E-05 34.405 By MS/MS By MS/MS 1 1 0.54417 0.58287 10.693 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57689 0.62865 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5133 0.54042 NaN 1 0 Median NaN NaN NaN 0 0 Median 13481000 7980100 5501200 0 0 0 0 0 0 11177000 6494700 4682500 0 0 0 2304100 1485400 818700 0 0 0 35484 3960 37288 186774;186775 189664;189665;189666 189665 3 VEPSDNGPLFTELK NSSESVGSDAPCVVKVEPSDNGPLFTELKF KVEPSDNGPLFTELKFYQRAAKPEQIQKWI K V E L K F 0 0 1 1 0 0 2 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1544.7722 Q99986 Q99986 72 85 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 1.0576E-05 147.37 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.69565 0.69764 12.172 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67336 0.64328 NaN 1 0 Median 0.84177 0.7566 NaN 1 0 Median 0.58158 0.76627 NaN 1 0 Median 0.71868 0.59879 NaN 1 0 Median 67732000 39171000 28560000 0 0 0 0 0 0 53274000 31528000 21746000 10269000 5106700 5162700 3781700 2334200 1447500 405950 202210 203740 35485 3775 37289 186776;186777;186778;186779 189667;189668;189669;189670;189671;189672;189673;189674 189668 8 VEPVGDVVSTR GKPLKISRRVLRAPKVEPVGDVVSTRDPVK RAPKVEPVGDVVSTRDPVKSQSKSNTSLPP K V E T R D 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 4 0 0 11 0 1156.6088 P46013 P46013 2968 2978 MKI67 Antigen KI-67 yes yes 2 0.0044939 69.276 By MS/MS By MS/MS 1 1 0.81525 0.78603 12.822 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81382 0.86063 NaN 1 1 Median 0.81668 0.7179 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11367000 6623500 4743600 0 0 0 0 0 0 8232000 4816100 3415900 3135100 1807400 1327800 0 0 0 0 0 0 35486 2335 37290 186780;186781 189675;189676 189676 2 VEPVGDVVSTRDPVK GKPLKISRRVLRAPKVEPVGDVVSTRDPVK VEPVGDVVSTRDPVKSQSKSNTSLPPLPFK K V E V K S 0 1 0 2 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 5 0 0 15 1 1595.8519 P46013 P46013 2968 2982 MKI67 Antigen KI-67 yes yes 2;3 1.0599E-09 98.592 By MS/MS By MS/MS By MS/MS By MS/MS 6 2 2 3 0.7565 0.85482 18.069 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74754 0.88138 18.496 6 2 Median 0.81398 0.75125 10.633 2 0 Median 0.76147 0.86187 1.5649 2 0 Median 0.7565 0.6623 18.483 3 0 Median 106270000 57707000 48565000 0 0 0 0 0 0 88353000 47924000 40428000 1600100 815480 784640 11784000 6528800 5255000 4536100 2438700 2097400 35487 2335 37291 186782;186783;186784;186785;186786;186787;186788;186789;186790;186791;186792;186793;186794 189677;189678;189679;189680;189681;189682;189683;189684;189685;189686;189687;189688 189679 12 VEPVGNAPLLALVHK VFFSSPLPGEEPIGRVEPVGNAPLLALVHK VEPVGNAPLLALVHKMNNCLSQMEQFPVKV R V E H K M 2 0 1 0 0 0 1 1 1 0 3 1 0 0 2 0 0 0 0 3 0 0 15 0 1555.9086 Q14669 Q14669 1207 1221 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.010975 24.191 By matching By MS/MS By matching 1 2 1 0.8538 0.90634 22.181 4 Median NaN NaN NaN 0 0 Median 1.2903 1.1183 NaN 1 0 Median 0.68965 0.75161 0.6269 2 0 Median NaN NaN NaN 0 0 Median 1.0385 1.0881 NaN 1 0 Median NaN NaN NaN 0 0 Median 6879100 3803100 3076000 0 0 0 681950 405550 276390 5041600 2907700 2133900 0 0 0 1155500 489820 665690 0 0 0 35488 2886 37292 186795;186796;186797;186798 189689;189690 189689 2 VEPYSLTAQQSSLIR PSRAGSPRRTSKKTKVEPYSLTAQQSSLIR VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K V E I R E 1 1 0 0 0 2 1 0 0 1 2 0 0 0 1 3 1 0 1 1 0 0 15 0 1690.889 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 684 698 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 2.4054E-26 194.17 By MS/MS By matching By MS/MS By matching 2 2 4 1 0.68583 0.6741 58.61 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64378 0.66119 1.6492 2 0 Median 0.29849 0.27671 119.56 2 0 Median 0.69113 0.71856 3.4479 4 0 Median 0.81275 0.6741 NaN 1 0 Median 49541000 29846000 19695000 0 0 0 0 0 0 31958000 19003000 12955000 2524400 2116600 407780 14719000 8542700 6176300 338860 183430 155430 35489 20 37293 186799;186800;186801;186802;186803;186804;186805;186806;186807 189691;189692;189693;189694;189695;189696;189697 189692 6 VEQATKPSFESGR ARDMNGKSLDGKAIKVEQATKPSFESGRRG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K V E G R R 1 1 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 13 1 1434.7103 P38159;H3BT71;H0Y6E7 P38159 81 93 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 2;3 2.7136E-06 122.7 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 8 6 0.92118 0.931 19.609 23 Median NaN NaN NaN 0 0 Median 1.7284 1.5803 NaN 1 0 Median 0.72705 0.73524 19.521 3 0 Median 1.1384 1.0958 12.209 5 0 Median 0.76591 0.79655 10.065 8 0 Median 1.138 1.0194 10.909 6 0 Median 154840000 80387000 74449000 0 0 0 1211000 451030 759970 15331000 8812200 6519200 17429000 8361200 9067400 84139000 46045000 38094000 36726000 16718000 20008000 35490 2273 37294 186808;186809;186810;186811;186812;186813;186814;186815;186816;186817;186818;186819;186820;186821;186822;186823;186824;186825;186826;186827;186828;186829;186830 189698;189699;189700;189701;189702;189703;189704;189705;189706;189707;189708;189709;189710;189711;189712;189713;189714;189715;189716;189717;189718;189719;189720;189721;189722;189723;189724;189725 189711 27 VEQATKPSFESGRR ARDMNGKSLDGKAIKVEQATKPSFESGRRG KVEQATKPSFESGRRGPPPPPRSRGPPRGL K V E R R G 1 2 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 14 2 1590.8114 P38159;H3BT71;H0Y6E7 P38159 81 94 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes no 3 0.0034843 33.782 By matching By matching By MS/MS By MS/MS 1 1 2 1 0.92262 0.96057 24.811 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59503 0.69639 NaN 1 0 Median 1.2919 1.3763 NaN 1 0 Median 0.8475 0.96824 11.794 2 0 Median 1.1072 0.96057 NaN 1 0 Median 7588400 3871100 3717200 0 0 0 0 0 0 320390 166930 153450 326600 141120 185490 5927700 3155300 2772500 1013700 407820 605830 35491 2273 37295 186831;186832;186833;186834;186835 189726;189727;189728 189726 3 VEQESLLTAFR IGVAVDLILLFRELRVEQESLLTAFRCGLQ RELRVEQESLLTAFRCGLQFLGNIASRNED R V E F R C 1 1 0 0 0 1 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 11 0 1291.6772 Q9UBB4;A0A1W2PQD2 Q9UBB4 123 133 ATXN10 Ataxin-10 yes no 2 0.00015157 89.247 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1756 1.0209 24.821 5 Median 0.71808 0.71635 NaN 1 0 Median 1.0506 0.89025 NaN 1 0 Median 1.297 1.2992 NaN 1 0 Median 1.4368 1.2602 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1756 1.0209 NaN 1 0 Median 15148000 7537500 7610800 3321700 1992800 1329000 5208900 2388300 2820600 5719000 2795800 2923200 249820 94460 155360 0 0 0 648800 266140 382660 35492 4232 37296 186836;186837;186838;186839;186840 189729;189730;189731 189730 3 VEQFLTIAR LSLRRSGRQPKRTERVEQFLTIARRRGRRS PKRTERVEQFLTIARRRGRRSMPVSLEDSG R V E A R R 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1075.6026 Q9BTC0 Q9BTC0 74 82 DIDO1 Death-inducer obliterator 1 yes yes 2 0.002581 85.731 By MS/MS 2 1.1469 1.203 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1469 1.203 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984100 2289400 2694700 0 0 0 0 0 0 4984100 2289400 2694700 0 0 0 0 0 0 0 0 0 35493 3824 37297 186841;186842 189732;189733 189732 2 VEQIAAIAQELNELDYYDSHNVNTR KHEAFESDLAAHQDRVEQIAAIAQELNELD LNELDYYDSHNVNTRCQKICDQWDALGSLT R V E T R C 3 1 3 2 0 2 3 0 1 2 2 0 0 0 0 1 1 0 2 2 0 0 25 0 2904.389 O43707 O43707 470 494 ACTN4 Alpha-actinin-4 yes yes 3;4 4.4738E-22 97.346 By MS/MS By MS/MS By MS/MS 2 4 1 0.8123 0.80208 12.637 7 Median 0.87776 0.86258 8.58 2 0 Median 0.99384 0.84965 12.577 4 0 Linear 0.6927 0.74317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21429000 10517000 10913000 6922400 3371300 3551100 13014000 6250600 6763700 1492700 894840 597840 0 0 0 0 0 0 0 0 0 35494 1585 37298 186843;186844;186845;186846;186847;186848;186849 189734;189735;189736;189737;189738;189739;189740;189741;189742 189740 9 VEQIAAIAQELNELDYYDSPSVNAR KHEAFESDLAAHQDRVEQIAAIAQELNELD LNELDYYDSPSVNARCQKICDQWDNLGALT R V E A R C 4 1 2 2 0 2 3 0 0 2 2 0 0 0 1 2 0 0 2 2 0 0 25 0 2807.3614 P12814;H9KV75;H7C5W8 P12814 451 475 ACTN1 Alpha-actinin-1 yes no 3 4.692E-10 63.122 By MS/MS 1 11.313 9.8026 NaN 1 Median NaN NaN NaN 0 0 Median 11.313 9.8026 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3690500 704840 2985700 0 0 0 3690500 704840 2985700 0 0 0 0 0 0 0 0 0 0 0 0 35495 1983 37299 186850 189743 189743 1 VEQIEAGTPGR EEHGIKFIRQFVPIKVEQIEAGTPGRLRVV VPIKVEQIEAGTPGRLRVVAQSTNSEEIIE K V E G R L 1 1 0 0 0 1 2 2 0 1 0 0 0 0 1 0 1 0 0 1 0 0 11 0 1155.5884 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9 E9PIR7 256 266 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 0.003904 70.908 By MS/MS 1 0.82654 0.69785 NaN 1 Median NaN NaN NaN 0 0 Median 0.82654 0.69785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6788700 3544600 3244000 0 0 0 6788700 3544600 3244000 0 0 0 0 0 0 0 0 0 0 0 0 35496 11 37300 186851 189744 189744 1 VEQIPYGER QTVDYGHGRDISTNKVEQIPYGERITLRPD DISTNKVEQIPYGERITLRPDPLPERSTFE K V E E R I 0 1 0 0 0 1 2 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 9 0 1089.5455 P49750;F8VU51;H0YIQ2;H0YI23 P49750 1653 1661 YLPM1 YLP motif-containing protein 1 yes no 2 0.0413 51.949 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35497 2395 37301 186852 189745 189745 1 VEQLFQVMNGILAQDSACSQR PFLVKGGEDLRQDQRVEQLFQVMNGILAQD VMNGILAQDSACSQRALQLRTYSVVPMTSR R V E Q R A 2 1 1 1 1 4 1 1 0 1 2 0 1 1 0 2 0 0 0 2 0 0 21 0 2393.1468 P78527 P78527 3764 3784 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00034108 28.202 By MS/MS 2 1.6602 1.4272 30.66 2 Median NaN NaN NaN 0 0 Median 1.6602 1.4272 30.66 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3229000 1219800 2009300 0 0 0 3229000 1219800 2009300 0 0 0 0 0 0 0 0 0 0 0 0 35498 2647 37302 186853;186854 189746;189747 189746 2 VEQLGAEGNVEESQK RVHELNEEIGKLLAKVEQLGAEGNVEESQK VEQLGAEGNVEESQKVMDEVEKARAKKREA K V E Q K V 1 0 1 0 0 2 4 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1615.7689 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 206 220 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 1.1956E-09 155.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 2 3 1.0382 0.9357 17.45 11 Median 0.95445 0.89358 NaN 1 0 Median 1.1868 1.023 11.078 3 2 Median 0.92829 0.95917 11.752 3 1 Median 1.0373 0.93159 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1397 0.9357 32.675 3 0 Median 87673000 42171000 45502000 7450100 3558200 3891900 18706000 8488600 10217000 38586000 19316000 19270000 7858200 3465900 4392300 0 0 0 15072000 7342000 7730100 35499 206;4407 37303 186855;186856;186857;186858;186859;186860;186861;186862;186863;186864;186865;186866;186867;186868 189748;189749;189750;189751;189752;189753;189754;189755;189756;189757;189758;189759;189760;189761;189762;189763;189764;189765;189766;189767;189768;189769;189770;189771 189756 24 VEQLKPYHAHKEEMIK FFVKFFGTEDHAWIKVEQLKPYHAHKEEMI EQLKPYHAHKEEMIKINKGKRFQQAVDAVE K V E I K I 1 0 0 0 0 1 3 0 2 1 1 3 1 0 1 0 0 0 1 1 0 0 16 2 1979.0299 Q49A26;K7EMM8;K7EQB2 Q49A26 57 72 GLYR1 Putative oxidoreductase GLYR1 yes no 4 0.059156 10.816 By MS/MS 1 0.69003 0.75164 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69003 0.75164 NaN 1 0 Median NaN NaN NaN 0 0 Median 4624200 2651200 1973000 0 0 0 0 0 0 0 0 0 0 0 0 4624200 2651200 1973000 0 0 0 35500 3018 37304 186869 189772 189772 1 VEQTETPEMMEAR RYSDSLVQKGYKVARVEQTETPEMMEARCR ARVEQTETPEMMEARCRKMAHISKYDRVVR R V E A R C 1 1 0 0 0 1 4 0 0 0 0 0 2 0 1 0 2 0 0 1 0 0 13 0 1549.6752 P52701;A0A494C0M1;A0A087WWJ1 P52701 483 495 MSH6 DNA mismatch repair protein Msh6 yes no 2 6.6201E-07 151.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 2 1 1 0.88944 0.89992 17.842 9 Median 0.83349 0.7992 12.223 2 0 Median 0.97331 0.82259 14.966 2 0 Median 0.81861 0.89992 NaN 1 0 Median 1.0654 0.92295 0.83952 2 0 Median 1.135 1.1868 NaN 1 0 Median 0.77904 0.64051 NaN 1 0 Median 59069000 31570000 27499000 20409000 11361000 9047600 8043400 3714200 4329300 19076000 10897000 8179200 9356000 4461200 4894800 1679000 878690 800270 505270 257510 247760 35501 2453 37305 186870;186871;186872;186873;186874;186875;186876;186877;186878 189773;189774;189775;189776;189777;189778;189779;189780;189781;189782;189783;189784;189785 189783 13 VEQVLSLEPQHELK ______________________________ KVEQVLSLEPQHELKFRGPFTDVVTTNLKL K V E L K F 0 0 0 0 0 2 3 0 1 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1647.8832 O95292;E5RK64 O95292 4 17 VAPB Vesicle-associated membrane protein-associated protein B/C yes no 2;3 6.5451E-08 101.93 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 2 1.0123 0.89852 19.152 8 Median 0.88092 0.81288 28.575 3 0 Median 1.0793 0.90696 NaN 1 0 Median 0.92728 0.86924 3.362 2 0 Median 1.3437 1.1132 13.911 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158650000 82665000 75989000 112250000 59325000 52929000 5306500 2570300 2736200 34144000 18128000 16016000 6948700 2640800 4307900 0 0 0 0 0 0 35502 1760 37306 186879;186880;186881;186882;186883;186884;186885;186886 189786;189787;189788;189789;189790;189791;189792;189793;189794 189790 9 VESDLKGPEVDIEGPEGK KGPKVKGDVDVSLPKVESDLKGPEVDIEGP DLKGPEVDIEGPEGKLKGPKFKMPDVHFKS K V E G K L 0 0 0 2 0 0 4 3 0 1 1 2 0 0 2 1 0 0 0 2 0 0 18 1 1896.9317 Q09666 Q09666 4484 4501 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 2.7523E-13 139.11 By MS/MS By MS/MS By MS/MS 2 2 3 0.78851 0.8205 12.21 7 Median 0.67294 0.73283 2.9514 2 0 Median NaN NaN NaN 0 0 Median 0.80222 0.90801 2.2698 2 0 Median 0.80763 0.8205 13.229 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128520000 71994000 56521000 37163000 22965000 14198000 0 0 0 58345000 31622000 26723000 33008000 17408000 15601000 0 0 0 0 0 0 35503 2749 37307 186887;186888;186889;186890;186891;186892;186893 189795;189796;189797;189798;189799;189800;189801;189802;189803;189804;189805;189806;189807;189808;189809;189810;189811;189812 189807 18 VESEIKVPDVELK KGPNVKGEYDVTMPKVESEIKVPDVELKSA PKVESEIKVPDVELKSAKMDIDVPDVEVQG K V E L K S 0 0 0 1 0 0 3 0 0 1 1 2 0 0 1 1 0 0 0 3 0 0 13 1 1483.8134 Q09666 Q09666 843 855 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0001812 150.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 2 5 1 0.98396 1.0556 20.8 13 Median 0.99877 1.032 7.3678 4 1 Median 1.1916 1.1388 NaN 1 0 Median 0.99292 1.1244 5.7643 2 0 Median 0.98396 0.99965 30.995 5 0 Median NaN NaN NaN 0 0 Median 0.8778 0.78333 NaN 1 0 Median 153890000 77239000 76653000 83140000 40944000 42196000 15964000 8871600 7092600 50537000 25472000 25064000 3905100 1769000 2136100 0 0 0 346780 181770 165010 35504 2749 37308 186894;186895;186896;186897;186898;186899;186900;186901;186902;186903;186904;186905;186906 189813;189814;189815;189816;189817;189818;189819;189820;189821;189822;189823;189824;189825;189826;189827 189820 15 VESHFDLELR GRHSKGVAKTVTKQRVESHFDLELRAAVMH VTKQRVESHFDLELRAAVMHDILDMMPEGI R V E L R A 0 1 0 1 0 0 2 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1243.6197 Q6P2Q9;I3L0J9 Q6P2Q9 677 686 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 3 0.00019264 72.006 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1338 1.0578 7.6514 4 Median 1.0908 1.08 NaN 1 0 Median 1.4337 1.1933 NaN 1 0 Median 0.91176 0.99969 NaN 1 0 Median 1.1786 1.036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11966000 5771500 6194200 2707200 1249000 1458300 1265600 459680 805960 7353800 3807000 3546900 639020 255910 383110 0 0 0 0 0 0 35505 3157 37309 186907;186908;186909;186910 189828;189829;189830 189828 3 VESLESLYFTPIPAR PGEPASPISQRLPPKVESLESLYFTPIPAR VESLESLYFTPIPARSQAPLESSLDSLGDV K V E A R S 1 1 0 0 0 0 2 0 0 1 2 0 0 1 2 2 1 0 1 1 0 0 15 0 1720.9036 A0A087WY61;Q14980 Q14980 1767 1781 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 1.6767E-09 104.32 By MS/MS By MS/MS By MS/MS 1 1 1 0.67956 0.73175 6.5009 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67956 0.74068 NaN 1 0 Median 0.83113 0.73175 NaN 1 0 Median 0.63186 0.65813 NaN 1 0 Median NaN NaN NaN 0 0 Median 26236000 15514000 10722000 0 0 0 0 0 0 19153000 11295000 7858400 1166200 631290 534890 5916600 3587900 2328700 0 0 0 35506 2905;77 37310 186911;186912;186913 189831;189832;189833;189834;189835;189836;189837 189834 7 VESLLVTAISK DPGFAKQKVYNPRIRVESLLVTAISKASAQ PRIRVESLLVTAISKASAQQRAGRAGRTRP R V E S K A 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 1 0 0 2 0 0 11 0 1158.686 O43143 O43143 453 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00013849 100.48 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.1424 1.0395 9.11 5 Median 1.1054 1.0374 NaN 1 0 Median 1.1883 1.0395 NaN 1 0 Median 1.0571 1.167 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1817 1.222 NaN 1 0 Median 1.1424 0.98225 NaN 1 0 Median 31333000 14844000 16490000 5197400 2902200 2295200 18225000 7955600 10269000 4555000 2396100 2158900 0 0 0 3192500 1512100 1680400 163410 77549 85856 35507 1553 37311 186914;186915;186916;186917;186918 189838;189839;189840;189841;189842;189843 189838 6 VESLQEEIAFLK DVDNASLARLDLERKVESLQEEIAFLKKLH ERKVESLQEEIAFLKKLHEEEIQELQAQIQ K V E L K K 1 0 0 0 0 1 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1404.75 P08670;B0YJC4;B0YJC5 P08670 224 235 VIM Vimentin yes no 2 0.00060419 81.338 By MS/MS By MS/MS By matching By matching 2 1 1 2 0.90692 0.76896 42.197 6 Median NaN NaN NaN 0 0 Median 0.63412 0.54016 57.154 2 1 Median NaN NaN NaN 0 0 Median 0.75979 0.6573 NaN 1 0 Median 1.1295 1.0885 NaN 1 0 Median 1.1036 0.92132 32.774 2 0 Median 16202000 10965000 5237000 0 0 0 12899000 9272300 3627000 0 0 0 953860 618350 335510 1121900 486080 635820 1227200 588430 638730 35508 1907 37312 186919;186920;186921;186922;186923;186924 189844;189845 189845 2 VESLQEEIAFLKK DVDNASLARLDLERKVESLQEEIAFLKKLH RKVESLQEEIAFLKKLHEEEIQELQAQIQE K V E K K L 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 P08670;B0YJC4;B0YJC5 P08670 224 236 VIM Vimentin yes no 3 0.042185 14.687 By matching By matching By MS/MS By matching 1 2 1 1 1.1859 1.0293 29.177 5 Median 0.86831 0.84562 NaN 1 0 Median 1.7068 1.5754 13.076 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93765 1.0002 NaN 1 0 Median 1.1859 1.0293 NaN 1 0 Median 16714000 6392200 10322000 601680 298470 303200 9616900 3168300 6448600 0 0 0 0 0 0 2050000 936590 1113400 4445500 1988800 2456700 35509 1907 37313 186925;186926;186927;186928;186929 189846 189846 1 VESLSQVEVILQHSAADIAR TPQQLQNLTEDIRERVESLSQVEVILQHSA QVEVILQHSAADIARAEMLLEEAKRASKSA R V E A R A 3 1 0 1 0 2 2 0 1 2 2 0 0 0 0 3 0 0 0 3 0 0 20 0 2164.1488 G3XAI2;P07942 G3XAI2 1575 1594 LAMB1 Laminin subunit beta-1 yes no 3 2.7059E-09 82.482 By MS/MS 1 1.6774 1.4214 NaN 1 Median NaN NaN NaN 0 0 Median 1.6774 1.4214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2911800 1057900 1853800 0 0 0 2911800 1057900 1853800 0 0 0 0 0 0 0 0 0 0 0 0 35510 1125 37314 186930 189847;189848 189847 2 VETAATEAELK FQLMVQESETLIIPRVETAATEAELKHHHV IIPRVETAATEAELKHHHVTLEASQKELQE R V E L K H 3 0 0 0 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1160.5925 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2861 2871 SYNE2 Nesprin-2 yes no 2 0.00016921 79.974 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.80233 0.86336 22.899 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80233 0.86336 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62456 0.65833 NaN 1 0 Median 1.2114 1.0379 NaN 1 0 Median 11228000 5816300 5411700 0 0 0 0 0 0 5053400 2826400 2227000 0 0 0 2891900 1596800 1295100 3282700 1393200 1889500 35511 3521 37315 186931;186932;186933;186934 189849;189850;189851;189852;189853;189854;189855 189854 7 VETDHIVAAVGLEPNVELAK VSSGKLLIKLKDGRKVETDHIVAAVGLEPN IVAAVGLEPNVELAKTGGLEIDSDFGGFRV K V E A K T 3 0 1 1 0 0 3 1 1 1 2 1 0 0 1 0 1 0 0 4 0 0 20 0 2103.1212 O95831;E9PMA0 O95831 389 408 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 3 9.4208E-06 43.116 By MS/MS By matching 1 1 1.0882 0.99258 29.504 2 Median 0.83939 0.80568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4107 1.2228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4449100 2465200 1984000 4282300 2403200 1879100 0 0 0 0 0 0 166830 61959 104870 0 0 0 0 0 0 35512 1797 37316 186935;186936 189856 189856 1 VETFSGVYK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K V E Y K K 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 9 0 1028.5179 P62081;A0A2R8Y623 P62081 170 178 RPS7 40S ribosomal protein S7 yes no 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 3 1.2161 1.0874 20.844 12 Median 1.0861 1.0333 6.6402 2 0 Median 1.28 1.065 7.1691 2 0 Median 1.2663 1.1876 NaN 1 0 Median 1.5389 1.264 20.716 2 0 Median 1.1943 1.2902 10.282 2 0 Median 1.2855 1.0611 24.752 3 0 Plateau 125550000 56432000 69113000 48572000 23063000 25508000 15612000 6702300 8909400 32063000 13922000 18141000 4891800 2064500 2827300 8613400 3593100 5020200 15793000 7086700 8706300 35513 2568 37317 186937;186938;186939;186940;186941;186942;186943;186944;186945;186946;186947;186948 189857;189858;189859;189860;189861;189862;189863;189864;189865;189866;189867;189868;189869;189870;189871 189865 15 VETFSGVYKK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NVEHKVETFSGVYKKLTGKDVNFEFPEFQL K V E K K L 0 0 0 0 0 0 1 1 0 0 0 2 0 1 0 1 1 0 1 2 0 0 10 1 1156.6128 P62081;A0A2R8Y623 P62081 170 179 RPS7 40S ribosomal protein S7 yes no 2 0.00051514 88.948 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.1001 1.1662 24.319 6 Median 1.1133 1.1321 NaN 1 0 Median 1.418 1.3233 44.585 2 0 Median 1.2051 1.2014 NaN 1 0 Median 1.0871 0.91177 NaN 1 0 Median 1.0746 1.2354 NaN 1 0 Median NaN NaN NaN 0 0 Median 23848000 10862000 12986000 9544800 4599600 4945200 5015100 2371000 2644100 7969200 3289900 4679300 490080 193310 296770 829070 408400 420670 0 0 0 35514 2568 37318 186949;186950;186951;186952;186953;186954 189872;189873;189874;189875;189876;189877 189872 6 VETGILRPGMVVTFAPVNITTEVK DVYKIGGIGTVPVGRVETGILRPGMVVTFA MVVTFAPVNITTEVKSVEMHHEALSEALPG R V E V K S 1 1 1 0 0 0 2 2 0 2 1 1 1 1 2 0 4 0 0 5 0 0 24 1 2570.4142 A0A2U3TZH3;Q05639 A0A2U3TZH3 267 290 EEF1A2 Elongation factor 1-alpha 2 yes no 2;3 1.2441E-22 101.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 6 6 8 2 1 2 0.93374 0.96117 38.63 25 Median 0.84856 0.86924 18.9 6 0 Median 1.2249 1.1388 22.79 6 0 Median 0.83663 0.88545 57.467 8 1 Median 1.1842 1.1227 4.7195 2 0 Median 0.93374 0.96858 NaN 1 0 Median 1.149 1.0496 12.441 2 0 Median 150060000 75593000 74464000 10243000 5750100 4493200 20826000 8871400 11955000 108110000 56136000 51970000 8274000 3594300 4679700 1446200 755420 690780 1160600 485230 675320 35515 404 37319;37320 186955;186956;186957;186958;186959;186960;186961;186962;186963;186964;186965;186966;186967;186968;186969;186970;186971;186972;186973;186974;186975;186976;186977;186978;186979 189878;189879;189880;189881;189882;189883;189884;189885;189886;189887;189888;189889;189890;189891;189892 189886 188 15 VETGVLKPGMVVTFAPVNVTTEVK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA MVVTFAPVNVTTEVKSVEMHHEALSEALPG R V E V K S 1 0 1 0 0 0 2 2 0 0 1 2 1 1 2 0 4 0 0 7 0 0 24 1 2514.3767 P68104;Q5VTE0;A0A087WVQ9 P68104 267 290 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3 yes no 2;3;4 8.6011E-195 300.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 18 20 17 21 7 14 0.81155 0.78035 40.907 97 Median 0.84865 0.80721 13.197 18 0 Median 0.75001 0.7068 74.5 20 2 Median 0.832 0.92496 7.999 17 1 Median 0.76269 0.7088 31.423 21 1 Median 0.94008 1.0037 8.3332 7 0 Median 0.76765 0.66877 12.772 14 0 Median 4352100000 2402300000 1949800000 593860000 313320000 280540000 369030000 208990000 160040000 1967800000 1138200000 829630000 1104300000 573110000 531170000 93056000 46811000 46245000 224050000 121900000 102160000 35516 2632 37321;37322 186980;186981;186982;186983;186984;186985;186986;186987;186988;186989;186990;186991;186992;186993;186994;186995;186996;186997;186998;186999;187000;187001;187002;187003;187004;187005;187006;187007;187008;187009;187010;187011;187012;187013;187014;187015;187016;187017;187018;187019;187020;187021;187022;187023;187024;187025;187026;187027;187028;187029;187030;187031;187032;187033;187034;187035;187036;187037;187038;187039;187040;187041;187042;187043;187044;187045;187046;187047;187048;187049;187050;187051;187052;187053;187054;187055;187056;187057;187058;187059;187060;187061;187062;187063;187064;187065;187066;187067;187068;187069;187070;187071;187072;187073;187074;187075;187076 189893;189894;189895;189896;189897;189898;189899;189900;189901;189902;189903;189904;189905;189906;189907;189908;189909;189910;189911;189912;189913;189914;189915;189916;189917;189918;189919;189920;189921;189922;189923;189924;189925;189926;189927;189928;189929;189930;189931;189932;189933;189934;189935;189936;189937;189938;189939;189940;189941;189942;189943;189944;189945;189946;189947;189948;189949;189950;189951;189952;189953;189954;189955;189956;189957;189958;189959;189960;189961;189962;189963;189964;189965;189966;189967;189968;189969;189970;189971;189972;189973;189974;189975;189976;189977;189978;189979;189980;189981;189982;189983;189984;189985;189986;189987;189988;189989;189990;189991;189992;189993;189994;189995;189996;189997;189998;189999;190000;190001;190002;190003;190004;190005;190006;190007 189993 1297 115 VETPHVTIEDAQHR NEDSHRKCHRTRVEKVETPHVTIEDAQHRK KVETPHVTIEDAQHRKPMDQKRSSSLGSNR K V E H R K 1 1 0 1 0 1 2 0 2 1 0 0 0 0 1 0 2 0 0 2 0 0 14 0 1630.8063 Q5T200 Q5T200 1168 1181 ZC3H13 Zinc finger CCCH domain-containing protein 13 yes yes 3;4 2.0242E-08 100.55 By MS/MS By MS/MS 2 3 0.92973 0.89826 18.127 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83709 0.91573 15.121 2 0 Median 1.1883 1.045 23.134 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22019000 12236000 9783200 0 0 0 0 0 0 18270000 10686000 7584800 3748900 1550500 2198400 0 0 0 0 0 0 35517 3082 37323 187077;187078;187079;187080;187081 190008;190009;190010;190011;190012;190013;190014;190015 190008 8 VETPLEEAIK IGGPKEELIPEKLAKVETPLEEAIKFLTPL EKLAKVETPLEEAIKFLTPLKNLVKNKIET K V E I K F 1 0 0 0 0 0 3 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 10 0 1127.6074 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 650 659 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 0.0059454 64.711 By MS/MS By MS/MS 1 1 0.54853 0.56314 63.971 2 Median 0.37203 0.35824 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.80877 0.88525 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32453000 22214000 10239000 24160000 17490000 6670100 0 0 0 8293000 4724000 3568900 0 0 0 0 0 0 0 0 0 35518 213 37324 187082;187083 190016;190017 190016 2 VETPVLPPVLVPR MKKDEVCVNPYHYQRVETPVLPPVLVPRHT QRVETPVLPPVLVPRHTEIPAEFPPLDDYS R V E P R H 0 1 0 0 0 0 1 0 0 0 2 0 0 0 4 0 1 0 0 4 0 0 13 0 1414.8548 P84022;H3BVD1 P84022 130 142 SMAD3 Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog no no 2 0.0031835 45.161 By matching By matching By MS/MS By matching By matching 1 1 2 1 1 0.52075 0.50809 19.472 6 Median 0.46442 0.46121 NaN 1 0 Median 0.56339 0.49448 NaN 1 0 Median 0.52075 0.53473 3.384 2 0 Median 0.6255 0.54703 NaN 1 0 Median 0.32521 0.32761 NaN 1 0 Median NaN NaN NaN 0 0 Median 9487300 6105600 3381700 1564000 939220 624790 617010 379420 237580 6599100 4315000 2284100 324730 208770 115960 382530 263270 119260 0 0 0 35519 2664 37325 187084;187085;187086;187087;187088;187089 190018;190019;190020 190019 3 VETSDEEIHDLHQR TRSAAREDDSIRPFKVETSDEEIHDLHQRI KVETSDEEIHDLHQRIDKFRFTPPLEDSCF K V E Q R I 0 1 0 2 0 1 3 0 2 1 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1706.786 P07099;B1AQP8;B1AQP9 P07099 53 66 EPHX1 Epoxide hydrolase 1 yes no 3;4 0.00088803 38.799 By MS/MS By MS/MS 2 3 1.0491 0.91734 31.563 5 Median 0.92252 0.91707 18.704 2 0 Median 1.0558 0.91734 39.573 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8638300 3888500 4749800 3865000 1965300 1899700 4773300 1923200 2850100 0 0 0 0 0 0 0 0 0 0 0 0 35520 1879 37326 187090;187091;187092;187093;187094 190021;190022;190023;190024 190021 3 VETSEHFR TRESTRGSRRTPRKRVETSEHFRIDGPVIS RRTPRKRVETSEHFRIDGPVISESTPIAET R V E F R I 0 1 0 0 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 8 0 1003.4723 P42167 P42167 262 269 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 0.0079205 65.038 By MS/MS By MS/MS By matching 5 1 1 0.98445 0.97746 12.212 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98445 0.96083 5.349 5 0 Median NaN NaN NaN 0 0 Median 0.97142 0.97746 NaN 1 0 Median 1.5054 1.2997 NaN 1 0 Median 6082000 2949500 3132500 0 0 0 0 0 0 3391900 1635100 1756800 0 0 0 2092000 1043300 1048600 598130 270990 327140 35521 2307 37327 187095;187096;187097;187098;187099;187100;187101 190025;190026;190027;190028 190028 4 VETTEDLVAK VISVEDPPQRTAGVKVETTEDLVAKLKEIG TAGVKVETTEDLVAKLKEIGRI________ K V E A K L 1 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1103.571 P38117 P38117 239 248 ETFB Electron transfer flavoprotein subunit beta yes yes 2 5.9531E-07 137.13 By MS/MS By MS/MS By MS/MS 2 2 1 0.94242 0.87215 22.234 3 Median 0.94242 0.87215 NaN 1 1 Median 1.4597 1.2199 NaN 1 1 Median 0.85435 0.80119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70662000 34510000 36152000 28711000 14369000 14343000 12990000 5236500 7754000 28960000 14905000 14055000 0 0 0 0 0 0 0 0 0 35522 2272 37328 187102;187103;187104;187105;187106 190029;190030;190031;190032;190033;190034 190030 6 VETYLNENLR QLLNERIKLEGIITRVETYLNENLRKRLDQ GIITRVETYLNENLRKRLDQVEQELNELRE R V E L R K 0 1 2 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 10 0 1249.6303 Q9UQE7 Q9UQE7 828 837 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 7.6351E-26 177.32 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 2 3 1.1995 1.0188 13.196 10 Median 1.374 1.328 NaN 1 0 Median 1.548 1.3003 0.29319 2 2 Median 0.92224 1.0135 NaN 1 0 Median 1.2086 1.0242 NaN 1 1 Median 0.99808 1.0102 2.7181 2 0 Median 1.2073 0.98785 1.347 3 0 Plateau 147730000 70656000 77075000 6090100 2539500 3550600 13583000 5284700 8297900 41976000 21825000 20150000 9766800 4530900 5235800 63241000 30710000 32531000 13075000 5765800 7309000 35523 4362 37329 187107;187108;187109;187110;187111;187112;187113;187114;187115;187116 190035;190036;190037;190038;190039;190040;190041;190042;190043;190044;190045;190046;190047 190043 13 VETYLNENLRK QLLNERIKLEGIITRVETYLNENLRKRLDQ IITRVETYLNENLRKRLDQVEQELNELRET R V E R K R 0 1 2 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 1 1377.7252 Q9UQE7 Q9UQE7 828 838 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 3.297E-08 136.57 By MS/MS By MS/MS By MS/MS 2 3 1 1.1401 1.1328 20.404 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82726 0.93792 11.802 2 2 Median NaN NaN NaN 0 0 Median 1.1442 1.2961 9.3511 3 3 Median 1.1563 1.0007 NaN 1 1 Median 119070000 59315000 59753000 0 0 0 0 0 0 31887000 17911000 13976000 0 0 0 83266000 39496000 43770000 3915300 1908000 2007400 35524 4362 37330 187117;187118;187119;187120;187121;187122 190048;190049;190050;190051;190052;190053 190048 6 VEVDGSIMEGGGQILR ______________________________ EVDGSIMEGGGQILRVSTALSCLLGLPLRV R V E L R V 0 1 0 1 0 1 2 4 0 2 1 0 1 0 0 1 0 0 0 2 0 0 16 0 1658.8298 O00442;A6NIC1 O00442 6 21 RTCA RNA 3-terminal phosphate cyclase yes no 2 4.5487E-08 96.103 By MS/MS 1 2.4756 2.6932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.4756 2.6932 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8808200 2858600 5949600 0 0 0 0 0 0 8808200 2858600 5949600 0 0 0 0 0 0 0 0 0 35525 1464 37331 187123 190054 190054 1 VEVDMEK AQSTAMNRHIKASTKVEVDMEKAESLQVTR RHIKASTKVEVDMEKAESLQVTRGDFLASL K V E E K A 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 7 0 848.39497 I3L0N3;P46459;Q969G3;A0A2R8Y855;A0A2R8Y765;B4DGM3;A0A2R8Y4T4;A0A2R8Y7I9;A0A2U3TZQ7;A0A2R8Y7U4;J3QKS7;A0A2R8YES3 I3L0N3 458 464 NSF;SMARCE1 Vesicle-fusing ATPase;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 no no 2 0.044333 55.676 By MS/MS By MS/MS 1 2 0.95847 0.97385 32.339 3 Median NaN NaN NaN 0 0 Median 0.64049 0.5648 NaN 1 1 Median 0.97405 0.98833 2.0873 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5302100 2900900 2401200 0 0 0 2585100 1524500 1060700 2717000 1376500 1340500 0 0 0 0 0 0 0 0 0 35526 1272;389 37332 187124;187125;187126 190055;190056 190056 2 VEVDMVR NVDSKTYNASVLPVRVEVDMVRVMEVFLAQ NASVLPVRVEVDMVRVMEVFLAQLRLLFGI R V E V R V 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 3 0 0 7 0 846.42694 Q96S52 Q96S52 378 384 PIGS GPI transamidase component PIG-S yes yes 2 0.018478 62.717 By matching By MS/MS 2 1 1.3429 1.1629 30.238 3 Plateau 0.87952 0.88403 36.434 2 0 Median 1.3429 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7292800 3356900 3936000 2459300 1228600 1230700 4833500 2128300 2705200 0 0 0 0 0 0 0 0 0 0 0 0 35527 3729 37333 187127;187128;187129 190057 190057 1 VEVDTFMEAYDQK ISDYADSVPDPEALRVEVDTFMEAYDQKIA LRVEVDTFMEAYDQKIAEEEAKAKEEEGVP R V E Q K I 1 0 0 2 0 1 2 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 13 0 1573.697 Q9Y3A4 Q9Y3A4 171 183 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 0.00091964 62.303 By MS/MS 1 1.3205 1.2624 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3205 1.2624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943600 1182600 1761000 0 0 0 0 0 0 2943600 1182600 1761000 0 0 0 0 0 0 0 0 0 35528 4412 37334 187130 190058;190059 190058 2 VEVEEDGQLK RKITTKRIVENGQERVEVEEDGQLKSLT__ NGQERVEVEEDGQLKSLT____________ R V E L K S 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1144.5612 C9J2C4;A0A0J9YX62;O75190;Q8NHS0;C9JRD2;C9JXB9;P25686 C9J2C4 216 225 DNAJB6;DNAJB8;DNAJB2 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 8;DnaJ homolog subfamily B member 2 yes no 2 0.0075902 47.603 By matching By matching By MS/MS 1 1 1 0.99933 0.88616 19.188 3 Median NaN NaN NaN 0 0 Median 0.99933 0.88616 NaN 1 0 Median 1.1779 1.1135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91879 0.76049 NaN 1 0 Median 5574700 2884000 2690700 0 0 0 384350 198130 186220 988920 460230 528690 0 0 0 0 0 0 4201500 2225700 1975800 35529 291 37335 187131;187132;187133 190060;190061 190061 2 VEVERDNLAEDIMR ELRRQVDQLTNDKARVEVERDNLAEDIMRL RVEVERDNLAEDIMRLREKLQEEMLQREEA R V E M R L 1 2 1 2 0 0 3 0 0 1 1 0 1 0 0 0 0 0 0 2 0 0 14 1 1687.8199 P08670;B0YJC4 P08670 171 184 VIM Vimentin yes no 2;3 1.4366E-54 235.21 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 1 3 4 10 6 1.0554 1.0197 17.111 27 Median 0.98369 0.9812 9.3101 4 0 Median 1.1137 1.0043 NaN 1 0 Median 1.1163 1.2056 15.864 3 0 Plateau 1.2887 1.1938 9.2296 4 0 Median 1.0599 1.1661 11.184 9 0 Median 0.93675 0.82819 9.441 6 0 Median 692880000 326270000 366610000 117990000 61080000 56907000 379080 189790 189290 29740000 14983000 14757000 37944000 15281000 22663000 441660000 201990000 239660000 65170000 32740000 32429000 35530 1907 37336;37337 187134;187135;187136;187137;187138;187139;187140;187141;187142;187143;187144;187145;187146;187147;187148;187149;187150;187151;187152;187153;187154;187155;187156;187157;187158;187159;187160;187161 190062;190063;190064;190065;190066;190067;190068;190069;190070;190071;190072;190073;190074;190075;190076;190077;190078;190079;190080;190081;190082;190083;190084;190085;190086;190087 190073 677 26 VEVETSGIGDSLLNVK TRHLTKRLPTKSSQKVEVETSGIGDSLLNV EVETSGIGDSLLNVKCAAQTLEKRGKAKPK K V E V K C 0 0 1 1 0 0 2 2 0 1 2 1 0 0 0 2 1 0 0 3 0 0 16 0 1658.8727 O75152;E9PQ61 O75152 620 635 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 2 2.4134E-06 78.653 By MS/MS 1 2.6672 2.9282 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.6672 2.9282 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6868600 1713500 5155100 0 0 0 0 0 0 6868600 1713500 5155100 0 0 0 0 0 0 0 0 0 35531 1650 37338 187162 190088 190088 1 VEVGKDQEFTVDTR PLDLSKIKLNGLENRVEVGKDQEFTVDTRG RVEVGKDQEFTVDTRGAGGQGKLDVTILSP R V E T R G 0 1 0 2 0 1 2 1 0 0 0 1 0 1 0 0 2 0 0 3 0 0 14 1 1621.7948 O75369;E7EN95 O75369 956 969 FLNB Filamin-B yes no 2;3 2.4773E-134 293.47 By MS/MS By MS/MS By MS/MS By MS/MS 5 5 1 2 1.1576 1.1254 18.435 12 Median 1.0783 1.1026 11.923 4 1 Median 1.1941 1.1177 24.086 5 1 Median 0.81975 0.98242 NaN 1 0 Median 1.3554 1.2853 17.829 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 311110000 148910000 162200000 84604000 43104000 41500000 202810000 93728000 109080000 16063000 8983400 7079800 7630200 3095600 4534500 0 0 0 0 0 0 35532 1664 37339 187163;187164;187165;187166;187167;187168;187169;187170;187171;187172;187173;187174;187175 190089;190090;190091;190092;190093;190094;190095;190096;190097;190098;190099;190100;190101;190102;190103;190104;190105;190106;190107 190101 19 VEVGTEVTDYR PCANHKMHLYLGAAKVEVGTEVTDYRFFVR GAAKVEVGTEVTDYRFFVRAIIRHSDLVTK K V E Y R F 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 0 2 0 1 3 0 0 11 0 1266.6092 Q13085;Q59FY4 Q13085 1410 1420 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.00015157 90.108 By MS/MS By MS/MS By matching 1 1 1 0.67883 0.63522 57.55 2 Median NaN NaN NaN 0 0 Median 1.1158 0.95424 NaN 1 0 Median 0.41299 0.42286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6830900 3778500 3052500 0 0 0 4772800 2087000 2685800 2058200 1691500 366690 0 0 0 0 0 0 0 0 0 35533 2784 37340 187176;187177;187178 190108;190109;190110 190110 3 VEVKEEEESSSNGTASQSTSPSQPR KSEPMEVDEKKPEVKVEVKEEEESSSNGTA SNGTASQSTSPSQPRKKIFKPEELRQALMP K V E P R K 1 1 1 0 0 2 5 1 0 0 0 1 0 0 2 7 2 0 0 2 0 0 25 1 2649.2002 Q92793;I3L466 Q92793 1057 1081 CREBBP CREB-binding protein yes no 3 0.010906 18.699 By MS/MS By MS/MS 1 1 0.65382 0.70034 40.04 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44396 0.52765 NaN 1 1 Median 0.96287 0.92954 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2098500 1355800 742750 0 0 0 0 0 0 1406800 999130 407620 691770 356640 335130 0 0 0 0 0 0 35534 3557 37341 187179;187180 190111;190112;190113 190112 3 VEVKEELLAVGK TATSSKRRPRTRAQKVEVKEELLAVGKLTQ AQKVEVKEELLAVGKLTQTSGETTHTDKEP K V E G K L 1 0 0 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1312.7602 P46013 P46013 2849 2860 MKI67 Antigen KI-67 yes yes 2;3 2.394E-05 127.76 By MS/MS By MS/MS By matching By matching 6 6 1 2 1.2357 1.2593 29.319 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2007 1.3723 19.359 6 0 Median 1.0166 1.0127 41.58 6 0 Median 1.3789 1.457 NaN 1 0 Median 1.494 1.346 9.4096 2 0 Median 54345000 24738000 29607000 0 0 0 0 0 0 47785000 21982000 25803000 4100900 1837100 2263800 1993000 768810 1224200 465970 149960 316010 35535 2335 37342 187181;187182;187183;187184;187185;187186;187187;187188;187189;187190;187191;187192;187193;187194;187195 190114;190115;190116;190117;190118;190119;190120;190121;190122 190116 9 VEVLNDEDCR IMLDPQGEVITRQGRVEVLNDEDCREFPWH TRQGRVEVLNDEDCREFPWHPKPVLELSDS R V E C R E 0 1 1 2 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1247.5452 Q6DKJ4;A0A0C4DGI2 Q6DKJ4 294 303 NXN Nucleoredoxin yes no 2 0.0028895 58.676 By MS/MS 1 0.88985 0.77497 NaN 1 Median NaN NaN NaN 0 0 Median 0.88985 0.77497 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1221100 622360 598750 0 0 0 1221100 622360 598750 0 0 0 0 0 0 0 0 0 0 0 0 35536 3133 37343 187196 190123 190123 1 VEVNTNSGEIIHK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR PKVEVNTNSGEIIHKKRGRKPKKLQYAKPE K V E H K K 0 0 2 0 0 0 2 1 1 2 0 1 0 0 0 1 1 0 0 2 0 0 13 0 1438.7416 Q8WWQ0 Q8WWQ0 1645 1657 PHIP PH-interacting protein yes yes 3 0.010997 40.066 By MS/MS 1 0.8921 0.93439 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8921 0.93439 NaN 1 1 Median NaN NaN NaN 0 0 Median 5959500 3188100 2771500 0 0 0 0 0 0 0 0 0 0 0 0 5959500 3188100 2771500 0 0 0 35537 3512 37344 187197 190124 190124 1 VEVNTNSGEIIHKK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR KVEVNTNSGEIIHKKRGRKPKKLQYAKPED K V E K K R 0 0 2 0 0 0 2 1 1 2 0 2 0 0 0 1 1 0 0 2 0 0 14 1 1566.8366 Q8WWQ0 Q8WWQ0 1645 1658 PHIP PH-interacting protein yes yes 3 0.0045521 27.969 By MS/MS 2 0.5695 0.64058 11.024 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5695 0.64058 11.024 2 0 Median NaN NaN NaN 0 0 Median 2350800 1146800 1203900 0 0 0 0 0 0 0 0 0 0 0 0 2350800 1146800 1203900 0 0 0 35538 3512 37345 187198;187199 190125 190125 1 VEVTEFEDIK LLGEEDEEALHYLTRVEVTEFEDIKSGYRI HYLTRVEVTEFEDIKSGYRIDFYFDENPYF R V E I K S 0 0 0 1 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1207.5972 Q01105;A0A0C4DFV9;A0A087X027;P0DME0 Q01105 123 132 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.00033784 85.731 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 1.1819 1.101 16.593 11 Median 1.0395 0.97548 32.113 3 0 Median 1.1938 1.0069 11.67 3 0 Median 1.1387 1.114 7.5509 3 0 Median 1.2644 1.0643 12.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 438860000 222300000 216560000 108980000 48213000 60764000 110180000 49192000 60985000 191120000 112670000 78446000 28585000 12223000 16362000 0 0 0 0 0 0 35539 2683 37346 187200;187201;187202;187203;187204;187205;187206;187207;187208;187209;187210;187211 190126;190127;190128;190129;190130;190131;190132;190133;190134;190135;190136;190137;190138;190139 190127 14 VEVVSPLSSWK AALFRSSLAEFISERVEVVSPLSSWKRVVE ISERVEVVSPLSSWKRVVEGLSLLDLGVSP R V E W K R 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 3 0 1 0 3 0 0 11 0 1229.6656 Q9H490 Q9H490 32 42 PIGU Phosphatidylinositol glycan anchor biosynthesis class U protein yes yes 2 0.00014249 87.913 By MS/MS By MS/MS 1 1 1.0302 0.96102 10.507 2 Median 0.89401 0.8922 NaN 1 0 Median 1.1871 1.0351 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9791500 4521800 5269700 6706200 3190600 3515600 3085300 1331200 1754100 0 0 0 0 0 0 0 0 0 0 0 0 35540 3963 37347 187212;187213 190140;190141 190140 2 VEWTSDTVDNEHMGR RSLTIKLRKRKPEKKVEWTSDTVDNEHMGR VEWTSDTVDNEHMGRRSSKCCCIYEKPRAF K V E G R R 0 1 1 2 0 0 2 1 1 0 0 0 1 0 0 1 2 1 0 2 0 0 15 0 1774.7581 O60927 O60927 41 55 PPP1R11 Protein phosphatase 1 regulatory subunit 11 yes yes 3 9.1974E-05 64.394 By MS/MS 1 1.0244 0.96822 NaN 1 Median 1.0244 0.96822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6302600 2908700 3393900 6302600 2908700 3393900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35541 1640 37348 187214 190142;190143 190143 2 VEYHAGGSTQNSIK DKHKELFDELVKKFKVEYHAGGSTQNSIKV KVEYHAGGSTQNSIKVAQWMIQQPHKAATF K V E I K V 1 0 1 0 0 1 1 2 1 1 0 1 0 0 0 2 1 0 1 1 0 0 14 0 1489.7161 P55263 P55263 75 88 ADK Adenosine kinase yes yes 2;3 0.0048409 28.812 By matching By MS/MS 1 2 1.0619 0.91475 3.7699 3 Plateau 0.98393 0.96402 NaN 1 0 Median 1.0478 0.90534 1.4622 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3058300 1479500 1578800 465840 236720 229120 2592400 1242800 1349600 0 0 0 0 0 0 0 0 0 0 0 0 35542 2497 37349 187215;187216;187217 190144;190145;190146 190145 3 VEYHFLSPYVSPK TDRFVMKKLNDRVMRVEYHFLSPYVSPKES MRVEYHFLSPYVSPKESPFRHVFWGSGSHT R V E P K E 0 0 0 0 0 0 1 0 1 0 1 1 0 1 2 2 0 0 2 2 0 0 13 0 1564.7926 P02786;G3V0E5 P02786 681 693 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.008243 55.314 By MS/MS 1 0.80666 0.78581 NaN 1 Median 0.80666 0.78581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5625800 3395500 2230300 5625800 3395500 2230300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35543 1836 37350 187218 190147 190147 1 VEYLDDR LAPPQHLIRVEGNLRVEYLDDRNTFRHSVV IRVEGNLRVEYLDDRNTFRHSVVVPYEPPE R V E D R N 0 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 908.42396 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22;E7EQX7;E9PFT5 A0A0U1RQC9 164 170 TP53 Cellular tumor antigen p53 yes no 2 0.0030389 105.39 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.97607 0.91012 17.691 4 Median NaN NaN NaN 0 0 Median 0.88059 0.77165 NaN 1 0 Median 1.1747 1.179 NaN 1 0 Median 1.0174 0.88273 NaN 1 0 Median 0.93646 0.93836 NaN 1 0 Median NaN NaN NaN 0 0 Median 13900000 7130700 6769200 0 0 0 655060 395050 260010 4343500 1856800 2486700 4509900 2335400 2174500 4391600 2543500 1848100 0 0 0 35544 299 37351 187219;187220;187221;187222 190148;190149;190150;190151 190151 4 VEYLDDRNTFR LAPPQHLIRVEGNLRVEYLDDRNTFRHSVV GNLRVEYLDDRNTFRHSVVVPYEPPEVGSD R V E F R H 0 2 1 2 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 11 1 1426.6841 A0A0U1RQC9;P04637;A0A087WZU8;A0A087X1Q1;J3KP33;E7ESS1;A0A087WXZ1;A0A087WT22;E7EQX7;E9PFT5 A0A0U1RQC9 164 174 TP53 Cellular tumor antigen p53 yes no 2;3 1.4499E-26 174.98 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 6 2 1.1604 1.0824 32.981 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.388 1.5028 8.132 3 2 Plateau 1.0308 0.96147 21.709 4 2 Median 0.89178 0.96418 46.698 6 1 Median 1.2825 1.1309 17.807 2 0 Median 229360000 109770000 119590000 0 0 0 0 0 0 33490000 14245000 19244000 104110000 47154000 56956000 83859000 44939000 38921000 7902000 3431000 4471000 35545 299 37352 187223;187224;187225;187226;187227;187228;187229;187230;187231;187232;187233;187234;187235;187236;187237 190152;190153;190154;190155;190156;190157;190158;190159;190160;190161;190162;190163;190164;190165 190162 14 VEYSEEELK KRKHDNEGSGSKRPKVEYSEEELKTHISKG GSKRPKVEYSEEELKTHISKGTLGKFTVPM K V E L K T 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1124.5237 P12956;B1AHC9 P12956 557 565 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.00043177 128.69 By MS/MS By MS/MS By MS/MS 1 2 1 1.0738 1.0517 9.1525 4 Median NaN NaN NaN 0 0 Median 1.2178 1.0145 NaN 1 0 Median 0.92784 1.0088 10.993 2 0 Median 1.3641 1.1531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98700000 46317000 52383000 0 0 0 31411000 15060000 16351000 47812000 23429000 24382000 19477000 7827700 11650000 0 0 0 0 0 0 35546 1985 37353 187238;187239;187240;187241 190166;190167;190168;190169;190170 190170 5 VEYSEEELKTHISK KRKHDNEGSGSKRPKVEYSEEELKTHISKG KVEYSEEELKTHISKGTLGKFTVPMLKEAC K V E S K G 0 0 0 0 0 0 4 0 1 1 1 2 0 0 0 2 1 0 1 1 0 0 14 1 1690.8414 P12956;B1AHC9 P12956 557 570 XRCC6 X-ray repair cross-complementing protein 6 yes no 2;3;4 1.7692E-08 166.14 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 7 2 6 1.2534 1.1318 19.104 25 Median 1.097 1.013 17.88 5 0 Median 1.3231 1.2311 7.4584 2 0 Median 0.94683 1.0314 4.4516 3 0 Median 1.3602 1.256 21.084 7 0 Median 1.1621 1.2699 33.183 2 0 Median 1.2938 1.1633 16.372 6 2 Median 563700000 263030000 300670000 187790000 89309000 98483000 74546000 30916000 43629000 192530000 96332000 96195000 72135000 29209000 42927000 13729000 7211500 6518000 22968000 10049000 12919000 35547 1985 37354 187242;187243;187244;187245;187246;187247;187248;187249;187250;187251;187252;187253;187254;187255;187256;187257;187258;187259;187260;187261;187262;187263;187264;187265;187266 190171;190172;190173;190174;190175;190176;190177;190178;190179;190180;190181;190182;190183;190184;190185;190186;190187;190188;190189;190190;190191;190192;190193;190194;190195;190196;190197;190198 190186 28 VEYTLGEESEAPGQR LPEGQDIGAFVAEQKVEYTLGEESEAPGQR VEYTLGEESEAPGQRALPSEELNRQLEKLL K V E Q R A 1 1 0 0 0 1 4 2 0 0 1 0 0 0 1 1 1 0 1 1 0 0 15 0 1663.7689 E7EX73;E9PGM1;E7EUU4;Q04637;H7C0V6 E7EX73 1259 1273 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 2.5384E-19 186.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 3 1 1 1.1769 1.137 29.441 13 Median 1.1769 1.137 22.302 3 2 Median 1.0576 0.90938 9.349 4 3 Median 1.1922 1.2994 NaN 1 0 Median 1.4166 1.2037 24.241 3 0 Median 2.189 2.2795 NaN 1 1 Median 1.6289 1.3568 NaN 1 0 Median 124600000 59251000 65349000 51616000 24782000 26835000 30909000 15796000 15112000 18642000 8694700 9947600 15661000 7554200 8106800 5965600 1646700 4318900 1806100 777700 1028400 35548 894 37355 187267;187268;187269;187270;187271;187272;187273;187274;187275;187276;187277;187278;187279 190199;190200;190201;190202;190203;190204;190205;190206;190207;190208;190209;190210;190211;190212;190213;190214;190215;190216;190217 190200 19 VFAEYPGSSAQLR GFMDFICSLVTKSVKVFAEYPGSSAQLRVL VKVFAEYPGSSAQLRVLLAFYASTIVSALV K V F L R V 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 2 0 0 1 1 0 0 13 0 1423.7096 Q9H583;Q5T3Q7 Q9H583 202 214 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 5.1709E-07 111.06 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.0814 0.88022 31.845 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1218 1.2244 NaN 1 0 Median 1.0877 0.95449 NaN 1 1 Median 0.62373 0.65104 34.004 2 0 Median 1.0814 0.88022 NaN 1 0 Median 26832000 14198000 12635000 0 0 0 0 0 0 11017000 5665300 5351800 1846500 944310 902220 12730000 7011800 5718400 1238500 576320 662170 35549 3086 37356 187280;187281;187282;187283;187284 190218;190219;190220;190221 190219 4 VFANNADQQLVK NWALPVMYAVALDLRVFANNADQQLVKKGK DLRVFANNADQQLVKKGKSKVGDMLEKAAE R V F V K K 2 0 2 1 0 2 0 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 12 0 1345.699 Q5JVF3 Q5JVF3 117 128 PCID2 PCI domain-containing protein 2 yes yes 2 2.34E-06 166.16 By matching By MS/MS By MS/MS 1 2 1 0.99933 0.93545 46.887 4 Median 1.1675 1.09 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63298 0.62858 66.525 2 1 Median 1.0236 0.86974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63186000 31478000 31708000 5095900 2458900 2637000 0 0 0 51900000 25969000 25930000 6190200 3049500 3140700 0 0 0 0 0 0 35550 3057 37357 187285;187286;187287;187288 190222;190223;190224;190225;190226 190223 5 VFAQPNLAEMIQK LVSPKHALMVFRVAKVFAQPNLAEMIQKGE AKVFAQPNLAEMIQKGEQLFLEPELVIPHR K V F Q K G 2 0 1 0 0 2 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 13 0 1487.7806 Q9NXE4;H7C1Q6;H7C0W5;H7C2J2;H7C235;H7C2E2 Q9NXE4 511 523 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2 0.0031903 45.137 By MS/MS By matching 1 1 0.72747 0.81286 53.066 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50628 0.55854 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0453 1.183 NaN 1 0 Median NaN NaN NaN 0 0 Median 7627800 4364200 3263600 0 0 0 0 0 0 4388300 2999100 1389200 0 0 0 3239500 1365200 1874300 0 0 0 35551 4162 37358 187289;187290 190227;190228 190228 2 VFASELNAGIIK WDSLRSGPASTFNDRVFASELNAGIIKTDQ NDRVFASELNAGIIKTDQNYEKMMFKEALK R V F I K T 2 0 1 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1260.7078 Q9P2J5 Q9P2J5 796 807 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00047426 77.677 By MS/MS By matching By MS/MS 2 3 1 1.1475 1.0889 12.22 6 Median 1.1464 1.0884 2.9247 2 0 Median 1.2628 1.0671 15.849 3 0 Plateau 1.1135 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65659000 28956000 36704000 44568000 19803000 24764000 15071000 6443400 8627500 6020900 2708900 3312000 0 0 0 0 0 0 0 0 0 35552 4224 37359 187291;187292;187293;187294;187295;187296 190229;190230;190231 190231 3 VFASLPQVER ______________________________ YEIKKVFASLPQVERGVSKIIGGDPKGNNF K V F E R G 1 1 0 0 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 10 0 1144.6241 O75083;D6RD66 O75083 8 17 WDR1 WD repeat-containing protein 1 yes no 2 0.00035135 83.998 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.87814 0.85205 16.644 6 Median 0.87814 0.85755 2.6104 2 0 Median 0.92466 0.78668 12.987 2 0 Median 0.96556 0.96435 NaN 1 0 Median 0.72749 0.60737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35895000 18610000 17285000 15498000 8357400 7140500 5630200 2855700 2774500 12891000 6305200 6585900 1875900 1092000 783940 0 0 0 0 0 0 35553 1643 37360 187297;187298;187299;187300;187301;187302 190232;190233;190234 190233 3 VFAWGMGTNYQLGTGQDEDAWSPVEMMGK ACGASVGYAVTKDGRVFAWGMGTNYQLGTG GQDEDAWSPVEMMGKQLENRVVLSVSSGGQ R V F G K Q 2 0 1 2 0 2 2 5 0 0 1 1 3 1 1 1 2 2 1 2 0 0 29 0 3204.3991 P18754 P18754 366 394 RCC1 Regulator of chromosome condensation yes yes 3 3.028E-05 30.135 By MS/MS By matching 1 1 0.9338 0.86512 4.9194 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86672 0.83555 NaN 1 0 Median 1.0061 0.89575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14776000 6946400 7829900 0 0 0 0 0 0 14616000 6877200 7738600 160500 69212 91287 0 0 0 0 0 0 35554 2061 37361 187303;187304 190235;190236 190236 2 VFAWHPHTNK AEFAQVTNWSSCCLRVFAWHPHTNKFAVAL SCCLRVFAWHPHTNKFAVALLDDSVRVYNA R V F N K F 1 0 1 0 0 0 0 0 2 0 0 1 0 1 1 0 1 1 0 1 0 0 10 0 1235.62 Q9NRG9;F8VZ44 Q9NRG9 156 165 AAAS Aladin yes no 3 0.019759 25.437 By MS/MS 1 0.9642 0.98437 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9642 0.98437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1458900 763070 695800 0 0 0 0 0 0 1458900 763070 695800 0 0 0 0 0 0 0 0 0 35555 4082 37362 187305 190237;190238 190238 2 VFDAIMNFK LPRTFCQLILDPIFKVFDAIMNFKKEETAK LDPIFKVFDAIMNFKKEETAKLIEKLDIKL K V F F K K 1 0 1 1 0 0 0 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 9 0 1083.5423 P13639 P13639 300 308 EEF2 Elongation factor 2 yes yes 2 0.00077714 98.523 By MS/MS By matching By MS/MS By matching 2 3 2 2 1.0028 0.86952 27.708 9 Median 1.2121 1.1322 4.014 2 0 Median 0.9238 0.7951 9.16 3 0 Median 1.3428 1.4793 8.5812 2 0 Median 0.96722 0.83707 5.3788 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55448000 25172000 30276000 37257000 16755000 20502000 3224200 1594700 1629500 11918000 5288600 6629700 3048800 1533000 1515700 0 0 0 0 0 0 35556 1992 37363 187306;187307;187308;187309;187310;187311;187312;187313;187314 190239;190240;190241;190242;190243;190244 190239 6 VFDAIMNFKK LPRTFCQLILDPIFKVFDAIMNFKKEETAK DPIFKVFDAIMNFKKEETAKLIEKLDIKLD K V F K K E 1 0 1 1 0 0 0 0 0 1 0 2 1 2 0 0 0 0 0 1 0 0 10 1 1211.6373 P13639 P13639 300 309 EEF2 Elongation factor 2 yes yes 2;3 0.0011455 71.223 By MS/MS By matching By matching 4 1 1 1.2674 1.3184 26.985 6 Median 1.2674 1.3184 19.271 4 1 Median 0.86048 0.83235 NaN 1 0 Median 1.4771 1.6895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30269000 13537000 16732000 24479000 10547000 13932000 2461000 1451800 1009200 3329100 1538300 1790800 0 0 0 0 0 0 0 0 0 35557 1992 37364 187315;187316;187317;187318;187319;187320 190245;190246;190247;190248;190249 190246 5 VFDAIMNFKKEETAK LPRTFCQLILDPIFKVFDAIMNFKKEETAK VFDAIMNFKKEETAKLIEKLDIKLDSEDKD K V F A K L 2 0 1 1 0 0 2 0 0 1 0 3 1 2 0 0 1 0 0 1 0 0 15 2 1769.9022 P13639 P13639 300 314 EEF2 Elongation factor 2 yes yes 3 0.00012365 61.732 By MS/MS 2 1.6042 1.6235 79.996 2 Median 1.6042 1.6235 79.996 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31610000 10537000 21072000 31610000 10537000 21072000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35558 1992 37365 187321;187322 190250 190250 1 VFDENKEDDLTELSHR DLKEKENDELDIQLKVFDENKEDDLTELSH FDENKEDDLTELSHRLNDIRAEMDDMNEVY K V F H R L 0 1 1 3 0 0 3 0 1 0 2 1 0 1 0 1 1 0 0 1 0 0 16 1 1945.9017 A6NML8;K4DI95;C9J6U3;O60879 A6NML8 379 394 DIAPH2 Protein diaphanous homolog 2 yes no 4 0.0023688 29.341 By MS/MS 1 0.99761 1.1298 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99761 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4851500 2512500 2339000 0 0 0 0 0 0 4851500 2512500 2339000 0 0 0 0 0 0 0 0 0 35559 528 37366 187323 190251;190252 190251 2 VFDFAGEEVR ELEKPKETEKVKITKVFDFAGEEVRVTKEV VKITKVFDFAGEEVRVTKEVDATSKEAKSF K V F V R V 1 1 0 1 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 10 0 1167.556 Q9UEE9 Q9UEE9 168 177 CFDP1 Craniofacial development protein 1 yes yes 2 0.0030923 57.96 By matching By matching By MS/MS By matching 1 1 2 2 1.1316 1.0146 16.727 6 Median 1.2142 1.2049 NaN 1 0 Median 1.242 1.1067 NaN 1 0 Median 0.97477 1.0774 21.682 2 0 Median 1.0381 0.87659 8.3982 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10695000 5032700 5662200 4863900 2171800 2692100 343240 160200 183040 5181000 2566900 2614200 306700 133830 172870 0 0 0 0 0 0 35560 4255 37367 187324;187325;187326;187327;187328;187329 190253 190253 1 VFDGIPPPYDK PHKTKRGQAALDRLKVFDGIPPPYDKKKRM DRLKVFDGIPPPYDKKKRMVVPAALKVVRL K V F D K K 0 0 0 2 0 0 0 1 0 1 0 1 0 1 3 0 0 0 1 1 0 0 11 0 1246.6234 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 104 114 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.00068187 64.711 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 0.6458 0.54321 16.359 5 Median 0.58019 0.53703 NaN 1 0 Median 0.6458 0.54321 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51289 0.42282 NaN 1 0 Median 0.64581 0.66345 NaN 1 0 Median 0.6972 0.57936 NaN 1 0 Median 39497000 24796000 14701000 27142000 17706000 9435900 4482400 2640600 1841800 0 0 0 498060 290620 207440 3931100 2294100 1637000 3443600 1865100 1578500 35561 2288 37368 187330;187331;187332;187333;187334 190254;190255;190256;190257;190258;190259;190260 190254 7 VFDGIPPPYDKK PHKTKRGQAALDRLKVFDGIPPPYDKKKRM RLKVFDGIPPPYDKKKRMVVPAALKVVRLK K V F K K K 0 0 0 2 0 0 0 1 0 1 0 2 0 1 3 0 0 0 1 1 0 0 12 1 1374.7184 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 104 115 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 3 0.0014734 39.111 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1 0.83297 0.76194 21.941 7 Median 0.70763 0.74313 3.5342 2 0 Median 0.88977 0.82971 12.128 2 0 Median 1.0015 1.0014 NaN 1 1 Median 1.0933 0.98306 NaN 1 0 Median 0.49826 0.53171 NaN 1 0 Median NaN NaN NaN 0 0 Median 40976000 23045000 17930000 22637000 12566000 10071000 7234600 3801400 3433200 3518000 1656200 1861800 696930 321250 375680 6888800 4700600 2188200 0 0 0 35562 2288 37369 187335;187336;187337;187338;187339;187340;187341 190261;190262;190263;190264;190265;190266;190267;190268 190262 8 VFDKDGNGYISAAELR MKDTDSEEEIREAFRVFDKDGNGYISAAEL FDKDGNGYISAAELRHVMTNLGEKLTDEEV R V F L R H 2 1 1 2 0 0 1 2 0 1 1 1 0 1 0 1 0 0 1 1 0 0 16 1 1753.8635 P0DP25;P0DP24;P0DP23;A0A590UK56;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 92 107 CALM2;CALM1 yes no 2;3 4.2086E-19 186.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 4 3 3 1.0541 1.0174 15.503 17 Median 1.0099 0.99225 10.566 4 0 Median 1.0885 0.95905 11.403 3 0 Median 0.90012 0.93607 24.802 4 0 Median NaN NaN NaN 0 0 Median 1.0541 1.1923 4.5755 3 0 Median 1.4657 1.1767 19.706 3 0 Median 134330000 66364000 67962000 66755000 32096000 34659000 3178600 1538700 1639900 24458000 13047000 11411000 0 0 0 38537000 18947000 19589000 1397400 734450 662930 35563 1931 37370 187342;187343;187344;187345;187346;187347;187348;187349;187350;187351;187352;187353;187354;187355;187356;187357;187358 190269;190270;190271;190272;190273;190274;190275;190276;190277;190278;190279;190280;190281;190282;190283;190284;190285 190281 17 VFDKEGNGTVMGAELR NKDQATYEDFVEGLRVFDKEGNGTVMGAEL FDKEGNGTVMGAELRHVLATLGEKMKEEEV R V F L R H 1 1 1 1 0 0 2 3 0 0 1 1 1 1 0 0 1 0 0 2 0 0 16 1 1721.8407 P05976;P08590 P05976 138 153 MYL1;MYL3 Myosin light chain 1/3, skeletal muscle isoform;Myosin light chain 3 yes no 2;3 1.398E-09 151.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 1 1 1.1335 1.0008 19.734 11 Median 1.1774 1.1548 14.932 4 0 Median 1.1335 1.0008 10.676 3 0 Median 0.74684 0.7755 17.811 2 0 Median NaN NaN NaN 0 0 Median 0.78848 0.89272 NaN 1 0 Median 1.6207 1.296 NaN 1 0 Median 138480000 65737000 72743000 61129000 27335000 33795000 42336000 19588000 22748000 27479000 15193000 12286000 0 0 0 4926200 2682100 2244100 2609900 939540 1670300 35564 1870 37371 187359;187360;187361;187362;187363;187364;187365;187366;187367;187368;187369 190286;190287;190288;190289;190290;190291;190292;190293;190294;190295;190296;190297;190298;190299;190300 190299 15 VFDLLNR ELQVYATFFEIYSGKVFDLLNRKTKLRVLE FFEIYSGKVFDLLNRKTKLRVLEDGKQQVQ K V F N R K 0 1 1 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 875.4865 O00139 O00139 374 380 KIF2A Kinesin-like protein KIF2A yes yes 2 0.013989 75.311 By MS/MS By matching By matching 1 2 1 1.3465 1.2114 44.623 4 Median 0.86122 0.85382 NaN 1 0 Median 1.3465 1.2114 47.256 2 0 Median NaN NaN NaN 0 0 Median 2.3669 2.013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2388600 1158900 1229700 1540900 803200 737710 372110 173650 198450 0 0 0 475590 182040 293550 0 0 0 0 0 0 35565 1440 37372 187370;187371;187372;187373 190301;190302 190302 2 VFDLQFSTDSPR QNDDEKERLQRRRSRVFDLQFSTDSPRLLA RSRVFDLQFSTDSPRLLASPSSRSIDISAT R V F P R L 0 1 0 2 0 1 0 0 0 0 1 0 0 2 1 2 1 0 0 1 0 0 12 0 1410.6779 E9PHA2;Q15003;C9J470;C9JZP1 E9PHA2 61 72 NCAPH Condensin complex subunit 2 yes no 2 0.00015936 87.298 By MS/MS 1 1.1829 1.1506 NaN 1 Median 1.1829 1.1506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3202900 1278400 1924400 3202900 1278400 1924400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35566 929 37373 187374 190303 190303 1 VFDMLNR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI IIVGTPGRVFDMLNRRYLSPKYIKMFVLDE R V F N R R 0 1 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 893.44292 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25;Q14240;E7EQG2 P60842 162 168 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.001726 129.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 1 2 2 1.179 1.1251 42.546 12 Median 1.1699 1.0974 11.012 3 0 Median 1.0302 0.89705 NaN 1 0 Median 1.2049 1.2654 36.347 3 0 Median 1.0994 0.94635 NaN 1 0 Median 2.5133 2.6132 11.995 2 1 Median 1.1185 0.90897 17.846 2 0 Median 163330000 76157000 87174000 57125000 27503000 29622000 31457000 15010000 16447000 48868000 21677000 27191000 16427000 7868100 8559200 4023800 1294500 2729300 5429500 2803900 2625600 35567 2529;2867 37374 187375;187376;187377;187378;187379;187380;187381;187382;187383;187384;187385;187386 190304;190305;190306;190307;190308;190309;190310;190311;190312;190313;190314;190315;190316;190317 190308 14 VFDMLNRR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI IVGTPGRVFDMLNRRYLSPKYIKMFVLDEA R V F R R Y 0 2 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 8 1 1049.544 P60842;J3KT12;J3QS69;J3KSZ0;J3KTB5;J3QL43;J3QR64;J3QLN6;J3QKZ9;J3KS25;Q14240;E7EQG2 P60842 162 169 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.0035613 135.35 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 3 1.2544 1.2173 15.4 9 Median 1.1245 1.1591 6.9328 2 0 Median 1.3226 1.2138 9.9586 2 0 Median 1.3927 1.5079 NaN 1 0 Median 1.0795 1.0069 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4186 1.2542 21.093 3 0 Median 205750000 95593000 110150000 101700000 46372000 55331000 32740000 15204000 17536000 12264000 5267300 6996700 39418000 19235000 20183000 0 0 0 19622000 9515100 10107000 35568 2529;2867 37375 187387;187388;187389;187390;187391;187392;187393;187394;187395 190318;190319;190320;190321;190322;190323;190324;190325;190326;190327;190328;190329 190319 12 VFDPVPVGVTK ILPLHSQIPREEQRKVFDPVPVGVTKVILS EQRKVFDPVPVGVTKVILSTNIAETSITIN K V F T K V 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 4 0 0 11 0 1156.6492 Q08211 Q08211 698 708 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0005643 67.113 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 4 6 1 0.85955 0.91541 22.918 13 Median 1.0963 1.0604 NaN 1 0 Median 0.85785 0.75312 NaN 1 0 Median 0.83088 0.87642 19.843 4 0 Median NaN NaN NaN 0 0 Median 0.93582 0.93517 27.2 6 0 Median 1.1293 0.94116 NaN 1 0 Median 211400000 112150000 99243000 12191000 6016700 6174500 1497300 525940 971400 117210000 63918000 53289000 0 0 0 79052000 40979000 38073000 1448800 714210 734590 35569 2736 37376 187396;187397;187398;187399;187400;187401;187402;187403;187404;187405;187406;187407;187408 190330;190331;190332;190333;190334;190335;190336;190337;190338;190339;190340 190336 11 VFDQQSSPMVTR SEVDKVLSGLEILSKVFDQQSSPMVTRLLQ LSKVFDQQSSPMVTRLLQQQNLPQTGEQEL K V F T R L 0 1 0 1 0 2 0 0 0 0 0 0 1 1 1 2 1 0 0 2 0 0 12 0 1393.666 O15357;A0A0A0MTP6 O15357 235 246 INPPL1 Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 yes no 2 0.00020783 85.377 By MS/MS By MS/MS 1 2 0.47034 0.45007 98.076 2 Median 0.91939 0.90045 NaN 1 0 Median 0.24062 0.22495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5559000 3550900 2008100 3271400 1665100 1606200 2287700 1885800 401910 0 0 0 0 0 0 0 0 0 0 0 0 35570 1539 37377 187409;187410;187411 190341;190342 190341 2 VFDVIIR GTRDYSPRQMAVREKVFDVIIRCFKRHGAE RQMAVREKVFDVIIRCFKRHGAEVIDTPVF K V F I R C 0 1 0 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 2 0 0 7 0 860.51199 P12081;B3KWE1;B4DDD8;E7ETE2 P12081 76 82 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.018479 62.714 By matching By matching By MS/MS By matching 1 1 1 1 1.2391 1.2456 11.338 4 Median 1.248 1.2426 NaN 1 0 Median 1.5794 1.4016 NaN 1 0 Median 1.1892 1.2486 NaN 1 0 Median 1.2303 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5811300 2493900 3317400 1922000 776760 1145300 382340 160070 222270 2496100 1096300 1399800 1010900 460770 550100 0 0 0 0 0 0 35571 1975 37378 187412;187413;187414;187415 190343;190344 190344 2 VFDYFEGATSQR RDRIQNTWVPPPHARVFDYFEGATSQRKGD HARVFDYFEGATSQRKGDNVPQVNGENTER R V F Q R K 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 1 1 0 1 1 0 0 12 0 1418.6466 A0A0A0MT33;Q9UPN6 A0A0A0MT33 1273 1284 SCAF8 Protein SCAF8 yes no 2 0.00062094 66.595 By matching By MS/MS By matching 1 1 1 0.85304 0.93306 24.383 3 Median NaN NaN NaN 0 0 Median 1.3933 1.2243 NaN 1 0 Median 0.84885 0.93306 NaN 1 0 Median 0.85304 0.75259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26173000 14103000 12070000 0 0 0 421930 151240 270690 24762000 13402000 11360000 989370 549640 439730 0 0 0 0 0 0 35572 186 37379 187416;187417;187418 190345;190346 190346 2 VFEDESGKHWSK QKELEHMVRKILNLRVFEDESGKHWSKSVM NLRVFEDESGKHWSKSVMDKQYEILCVSQF R V F S K S 0 0 0 1 0 0 2 1 1 0 0 2 0 1 0 2 0 1 0 1 0 0 12 1 1447.6732 Q8TEA8;A0A2R8Y6X2;A0A2R8YCT7;A0A087WZV9 Q8TEA8 54 65 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1;D-tyrosyl-tRNA(Tyr) deacylase yes no 3 0.0019877 39.006 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0681 1.031 8.2628 4 Median 0.98062 0.99825 NaN 1 0 Median 1.1633 1.0648 NaN 1 0 Median 0.93276 0.93078 NaN 1 0 Median 1.2518 1.1274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16288000 7770900 8516800 3930400 1702300 2228100 2424100 1188000 1236100 5494600 2837000 2657600 4438600 2043600 2395000 0 0 0 0 0 0 35573 3476 37380 187419;187420;187421;187422 190347;190348;190349;190350;190351;190352;190353;190354 190352 8 VFEEDALSWEDKLNR HINSVSAMKLSPYYKVFEEDALSWEDKLNR VFEEDALSWEDKLNRIMALFDVWIDVQRRW K V F N R I 1 1 1 2 0 0 3 0 0 0 2 1 0 1 0 1 0 1 0 1 0 0 15 1 1849.8846 Q14204 Q14204 1515 1529 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 1.5672E-45 220.94 By MS/MS By MS/MS By MS/MS 3 2 3 0.93254 1.0577 20.328 8 Median 0.94543 0.96068 6.0366 3 0 Median 1.0264 0.97915 20.407 2 0 Median 0.91983 1.0667 26.255 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120690000 60244000 60442000 94330000 47382000 46948000 5082400 2133000 2949400 21275000 10730000 10545000 0 0 0 0 0 0 0 0 0 35574 2865 37381 187423;187424;187425;187426;187427;187428;187429;187430 190355;190356;190357;190358;190359;190360;190361;190362;190363;190364 190357 10 VFEELQATDK ELPREYLGANWTLEKVFEELQATDKKRVLE WTLEKVFEELQATDKKRVLEENQEHYHIVQ K V F D K K 1 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1178.5819 P57740;H0YG15 P57740 492 501 NUP107 Nuclear pore complex protein Nup107 yes no 2 0.0085741 74.464 By matching By MS/MS By matching 1 1 2 0.72053 0.74332 49.88 4 Median NaN NaN NaN 0 0 Median 0.37637 0.41633 NaN 1 0 Median 1.2975 1.3964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72053 0.74332 11.606 2 0 Median 44089000 21448000 22641000 0 0 0 2346900 1661100 685890 38414000 18015000 20399000 0 0 0 0 0 0 3328100 1772400 1555700 35575 2518 37382 187431;187432;187433;187434 190365 190365 0 VFEFGGPEVLK ______________________________ RAVRVFEFGGPEVLKLRSDIAVPIPKDHQV R V F L K L 0 0 0 0 0 0 2 2 0 0 1 1 0 2 1 0 0 0 0 2 0 0 11 0 1220.6441 Q08257;A6NP24;C9JH92 Q08257 13 23 CRYZ Quinone oxidoreductase yes no 2 0.0043727 48.091 By MS/MS 1 0.85038 0.7886 NaN 1 Median 0.85038 0.7886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9946400 5375700 4570800 9946400 5375700 4570800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35576 2737 37383 187435 190366;190367 190366 2 VFEGNRPTNSIVFTK AGKSPEDLERLLPHKVFEGNRPTNSIVFTK VFEGNRPTNSIVFTKLTPFMLGALVAMYEH K V F T K L 0 1 2 0 0 0 1 1 0 1 0 1 0 2 1 1 2 0 0 2 0 0 15 1 1707.8944 P06744;A0A2U3TZU2;CON__Q3ZBD7 P06744 467 481 GPI Glucose-6-phosphate isomerase yes no 2;3 7.0023E-09 113.22 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 7 2 2 1 1 0.91464 0.92712 56.931 20 Median 0.96584 0.96078 7.6579 7 1 Median 0.83965 0.76518 83.96 7 2 Median 0.88352 0.99372 1.8743 2 0 Median 0.92747 0.87033 1.2273 2 0 Median 1.0579 1.1636 NaN 1 0 Median 1.2866 1.0291 NaN 1 0 Median 803150000 407060000 396080000 623360000 309180000 314180000 88293000 51832000 36461000 63802000 34026000 29777000 16188000 7929200 8258900 9293700 3143300 6150400 2213400 955460 1257900 35577 1875 37384 187436;187437;187438;187439;187440;187441;187442;187443;187444;187445;187446;187447;187448;187449;187450;187451;187452;187453;187454;187455 190368;190369;190370;190371;190372;190373;190374;190375;190376;190377;190378;190379;190380;190381;190382;190383;190384;190385;190386;190387 190372 20 VFEHDSVELNCK LKQISSNKCFGGLQKVFEHDSVELNCKMKF LQKVFEHDSVELNCKMKFAVYLPPKAETGK K V F C K M 0 0 1 1 1 0 2 0 1 0 1 1 0 1 0 1 0 0 0 2 0 0 12 0 1475.6715 P10768 P10768 18 29 ESD S-formylglutathione hydrolase yes yes 2;3 7.9519E-06 96.604 By MS/MS 2 1.1514 0.96713 NaN 1 Median NaN NaN NaN 0 0 Median 1.1514 0.96713 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13087000 5956600 7130700 0 0 0 13087000 5956600 7130700 0 0 0 0 0 0 0 0 0 0 0 0 35578 1946 37385 187456;187457 190388;190389;190390 190389 3 VFEISPFEPWITR LPFPLPLFAYRWVARVFEISPFEPWITRDK ARVFEISPFEPWITRDKVERVWQCGGKVEI R V F T R D 0 1 0 0 0 0 2 0 0 2 0 0 0 2 2 1 1 1 0 1 0 0 13 0 1619.8348 A0A3B3ISG8;Q16795;H3BRM9;F5H0J3 A0A3B3ISG8 304 316 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.010506 35.959 By MS/MS By matching By MS/MS 1 1 1 0.71425 0.6866 25.458 3 Median 0.71425 0.6866 NaN 1 0 Median 1.2296 1.0622 NaN 1 0 Median 0.71169 0.68047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4221100 2329600 1891500 2862900 1596200 1266700 236840 105890 130950 1121400 627490 493880 0 0 0 0 0 0 0 0 0 35579 424 37386 187458;187459;187460 190391;190392;190393;190394 190394 4 VFELMTSLHTK RIEDGNNFGVAVQEKVFELMTSLHTKLEGF VQEKVFELMTSLHTKLEGFHTQISKYFSER K V F T K L 0 0 0 0 0 0 1 0 1 0 2 1 1 1 0 1 2 0 0 1 0 0 11 0 1304.6799 Q06323;H0YLU2 Q06323 156 166 PSME1 Proteasome activator complex subunit 1 yes no 2;3 5.1018E-05 84.213 By MS/MS By matching 3 2 1.0814 0.99865 16.064 5 Median 1.0226 0.92899 10.96 3 0 Median 1.349 1.1492 11.046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41556000 21100000 20456000 40189000 20450000 19739000 1367000 649570 717460 0 0 0 0 0 0 0 0 0 0 0 0 35580 2724 37387;37388 187461;187462;187463;187464;187465 190395;190396;190397;190398;190399 190396 1409 5 VFEMSQDK AESIKNQMTVKEWEKVFEMSQDKNLYHNLC TVKEWEKVFEMSQDKNLYHNLCTSLFPTIH K V F D K N 0 0 0 1 0 1 1 0 0 0 0 1 1 1 0 1 0 0 0 1 0 0 8 0 982.44298 Q14566 Q14566 337 344 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0038087 85.212 By MS/MS By matching 1 1 1.1146 1.0411 0.56251 2 Median NaN NaN NaN 0 0 Median 1.1869 1.037 NaN 1 0 Median 1.0467 1.0453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12561000 5604000 6956500 0 0 0 8371200 3658700 4712500 4189400 1945300 2244100 0 0 0 0 0 0 0 0 0 35581 2881 37389 187466;187467 190400 190400 1 VFENILLSSYTGR KNSRRIVLPDVMNPRVFENILLSSYTGRLV PRVFENILLSSYTGRLVMPAPEIVSYLTAA R V F G R L 0 1 1 0 0 0 1 1 0 1 2 0 0 1 0 2 1 0 1 1 0 0 13 0 1497.7827 Q5JU97;O43298 Q5JU97 80 92 ZBTB43 Zinc finger and BTB domain-containing protein 43 yes no 2 2.0552E-06 94.297 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35582 1565 37390 187468 190401 190401 1 VFEPNEEALGVVLHK RKRTEFAGDKFKEEKVFEPNEEALGVVLHK VFEPNEEALGVVLHKDSKWYQQWKDFKENN K V F H K D 1 0 1 0 0 0 3 1 1 0 2 1 0 1 1 0 0 0 0 3 0 0 15 0 1679.8883 O43615;M0QXU7 O43615 223 237 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 3 0.00022211 45.79 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 2 0.85238 0.78743 24.634 6 Median 0.81935 0.76291 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78049 0.81275 NaN 1 0 Median 0.58091 0.49858 NaN 1 0 Median 1.0745 1.0643 NaN 1 0 Median 0.92794 0.77275 8.5513 2 0 Median 20205000 10100000 10106000 9122200 4316300 4805900 0 0 0 7918600 4355300 3563400 171140 111010 60137 2645800 1154200 1491500 347790 162840 184950 35583 1577 37391 187469;187470;187471;187472;187473;187474 190402;190403;190404;190405 190402 4 VFEVMLATDR LIHNLRKNGIIKTDKVFEVMLATDRSHYAK IKTDKVFEVMLATDRSHYAKCNPYMDSPQS K V F D R S 1 1 0 1 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 2 0 0 10 0 1179.5958 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;F8WDT3;F8WAV5;F8WAX2 A0A0A0MRJ6 86 95 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2 0.0006139 107.15 By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 0.99524 1.0049 49.469 6 Median 1.0963 1.0412 NaN 1 0 Median 1.2043 1.0185 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78416 0.73122 NaN 1 0 Median 0.50829 0.54626 84.313 2 0 Median 1.3004 1.0731 NaN 1 0 Median 25412000 12027000 13385000 18485000 8640300 9844400 3770200 1750800 2019400 0 0 0 106740 43574 63164 2823200 1504000 1319200 227370 88153 139210 35584 163 37392 187475;187476;187477;187478;187479;187480 190406;190407;190408;190409 190407 4 VFEVNASNLEK KKIEKEIQQKWDTERVFEVNASNLEKQTSK DTERVFEVNASNLEKQTSKGKYFVTFPYPY R V F E K Q 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 2 0 0 11 0 1248.635 Q9P2J5;A0A087WXY1 Q9P2J5 29 39 LARS Leucine--tRNA ligase, cytoplasmic yes no 2 0.00011409 129.38 By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 0.89353 0.84001 44.148 8 Median 1.0955 1.0448 18.612 2 0 Median 1.3135 1.1254 60.922 3 0 Median 0.72016 0.77038 NaN 1 0 Median 0.6461 0.54515 39.953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66629000 32109000 34519000 30835000 14629000 16207000 21960000 9847000 12113000 8472300 4631600 3840700 5360900 3002300 2358600 0 0 0 0 0 0 35585 4224 37393 187481;187482;187483;187484;187485;187486;187487;187488 190410;190411;190412;190413;190414;190415 190410 6 VFEVSLADLQNDEVAFR RTQGTKIASDGLKGRVFEVSLADLQNDEVA EVSLADLQNDEVAFRKFKLITEDVQGKNCL R V F F R K 2 1 1 2 0 1 2 0 0 0 2 0 0 2 0 1 0 0 0 3 0 0 17 0 1950.9687 P61247;E9PFI5;D6RG13;D6RAT0;H0Y8L7;D6RB09;D6RAS7;D6RI02;D6RED7;D6RGE0 P61247 66 82 RPS3A 40S ribosomal protein S3a yes no 2 2.3535E-10 101.53 By MS/MS 1 1.1429 0.95052 NaN 1 Median NaN NaN NaN 0 0 Median 1.1429 0.95052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10493000 4837700 5655400 0 0 0 10493000 4837700 5655400 0 0 0 0 0 0 0 0 0 0 0 0 35586 2553 37394 187489 190416 190416 1 VFEVSLADLQNDEVAFRK RTQGTKIASDGLKGRVFEVSLADLQNDEVA VSLADLQNDEVAFRKFKLITEDVQGKNCLT R V F R K F 2 1 1 2 0 1 2 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 18 1 2079.0637 P61247;E9PFI5;D6RG13;D6RAT0;H0Y8L7;D6RB09;D6RAS7;D6RI02;D6RED7;D6RGE0 P61247 66 83 RPS3A 40S ribosomal protein S3a yes no 3 2.5195E-08 89.866 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.89 1.7914 18.866 4 Linear 1.1087 1.0979 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.3347 1.4597 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3074 1.4096 NaN 1 0 Median 1.9475 1.735 NaN 1 0 Median 11051000 4833600 6217600 1798300 739260 1059000 0 0 0 2396500 1021200 1375300 0 0 0 1814000 888670 925370 5042500 2184500 2858000 35587 2553 37395 187490;187491;187492;187493 190417;190418;190419;190420;190421 190421 5 VFEYMSYLQR APGQKKCYSCPVCSRVFEYMSYLQRHSITH PVCSRVFEYMSYLQRHSITHSEVKPFECDI R V F Q R H 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 1 0 0 2 1 0 0 10 0 1334.6329 K7EM32;Q9P0T4 K7EM32 95 104 ZNF581 Zinc finger protein 581 yes no 2 0.00035909 83.005 By MS/MS By MS/MS 1 1 1.1745 1.1268 15.179 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3387 1.2544 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0304 1.0121 NaN 1 0 Median NaN NaN NaN 0 0 Median 3466700 1515200 1951500 0 0 0 0 0 0 1471400 668780 802650 0 0 0 1995300 846460 1148800 0 0 0 35588 1381 37396 187494;187495 190422;190423;190424;190425 190425 4 VFFDLMR NYVETSAKTRANVDKVFFDLMREIRARKME KTRANVDKVFFDLMREIRARKMEDSKEKNG K V F M R E 0 1 0 1 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 7 0 926.46841 P11233;P11234 P11233 167 173 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B no no 2 0.035951 47.067 By MS/MS By MS/MS By matching 1 1 1 0.99436 0.94324 17.325 3 Median 0.99436 0.94324 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81736 0.78547 NaN 1 0 Median 1.3531 1.1105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21378000 11394000 9984100 12689000 6472900 6215900 0 0 0 8282600 4751800 3530900 406650 169310 237330 0 0 0 0 0 0 35589 1958;1959 37397 187496;187497;187498 190426;190427;190428 190428 3 VFFEQSK MARDLEQGDVSETIRVFFEQSKSFPPAAKS GDVSETIRVFFEQSKSFPPAAKSLLTIQEV R V F S K S 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 7 0 883.44397 P49916;K7ERZ5;K7EQB6 P49916 356 362 LIG3 DNA ligase 3 yes no 2 0.020057 60.788 By MS/MS 1 0.93736 1.0297 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93736 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3424800 1752800 1672000 0 0 0 0 0 0 3424800 1752800 1672000 0 0 0 0 0 0 0 0 0 35590 2406 37398 187499 190429;190430 190429 2 VFFTDYGQIPK LYNPKGIALDPAMGKVFFTDYGQIPKVERC AMGKVFFTDYGQIPKVERCDMDGQNRTKLV K V F P K V 0 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 1 0 1 1 0 0 11 0 1313.6656 Q07954;Q6PJ72 Q07954 337 347 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes no 2 0.0018837 56.563 By MS/MS 1 0.6235 0.62488 NaN 1 Median 0.6235 0.62488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12792000 7576200 5215800 12792000 7576200 5215800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35591 2733 37399 187500 190431;190432 190432 2 VFFYNPTTR IPGTPWCVVWTGDERVFFYNPTTRLSMWDR WTGDERVFFYNPTTRLSMWDRPDDLIGRAD R V F T R L 0 1 1 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 1 1 0 0 9 0 1143.5713 O14776;G3V220 O14776 544 552 TCERG1 Transcription elongation regulator 1 yes no 2 0.0004831 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 3 1.0389 0.9433 20.877 8 Median NaN NaN NaN 0 0 Median 0.99126 0.84684 NaN 1 0 Median 0.89668 0.97137 3.4907 2 0 Median 1.1059 0.93893 NaN 1 0 Median 1.0678 1.1144 NaN 1 0 Median 1.043 0.87039 35.395 3 0 Median 86175000 45212000 40963000 0 0 0 3027500 1527100 1500500 69687000 37420000 32267000 5379600 2540500 2839100 5482400 2465200 3017200 2598400 1259500 1339000 35592 1494 37400 187501;187502;187503;187504;187505;187506;187507;187508 190433;190434;190435;190436;190437;190438;190439;190440;190441;190442 190435 10 VFGAAPLENVVR IVLCISPSKPNPVFKVFGAAPLENVVRKYK VFKVFGAAPLENVVRKYKSMILEDLESALA K V F V R K 2 1 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 3 0 0 12 0 1270.7034 Q16656;C9JP85 Q16656 146 157 NRF1 Nuclear respiratory factor 1 yes no 2 2.5339E-05 96.89 By MS/MS By MS/MS 2 4 0.88119 0.78442 22.379 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60851 0.60514 24.682 2 0 Median 1.0271 0.86216 14.646 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26534000 15137000 11397000 0 0 0 0 0 0 23097000 13432000 9664600 3437200 1704600 1732600 0 0 0 0 0 0 35593 2992 37401 187509;187510;187511;187512;187513;187514 190443;190444;190445 190443 3 VFGAGYPSLPTMTVSDWYEQHRK PVKPFILTRNMAQAKVFGAGYPSLPTMTVS LPTMTVSDWYEQHRKYGALPDQGIAKAAPE K V F R K Y 1 1 0 1 0 1 1 2 1 0 1 1 1 1 2 2 2 1 2 2 0 0 23 1 2668.2744 P78318 P78318 254 276 IGBP1 Immunoglobulin-binding protein 1 yes yes 3 0.052908 7.1117 By MS/MS 1 0.91046 0.97523 NaN 1 Median 0.91046 0.97523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2448200 1228200 1220000 2448200 1228200 1220000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35594 2638 37402 187515 190446 190446 1 VFGAPEVLENLEVK AEILLSNHYTSSEIRVFGAPEVLENLEVKS RVFGAPEVLENLEVKSGSPAVLAFAKEKSF R V F V K S 1 0 1 0 0 0 3 1 0 0 2 1 0 1 1 0 0 0 0 3 0 0 14 0 1542.8294 Q8TEM1 Q8TEM1 1711 1724 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 9.3617E-08 98.353 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 3 1 1 0.83776 0.84132 22.545 8 Median 1.0614 1.0342 14.856 2 0 Median 0.99667 0.86869 NaN 1 0 Median 0.74895 0.81481 13.307 3 0 Median NaN NaN NaN 0 0 Median 0.59312 0.61842 NaN 1 0 Median 0.73251 0.60025 NaN 1 0 Median 32589000 17299000 15290000 7742500 3639700 4102800 3562600 1693000 1869600 20195000 11347000 8848000 0 0 0 897470 530120 367350 191990 89206 102780 35595 3477 37403 187516;187517;187518;187519;187520;187521;187522;187523 190447;190448;190449;190450;190451;190452 190450 6 VFGAPNVVEDEIDQYLSK GPSSEMETSVPPGFKVFGAPNVVEDEIDQY APNVVEDEIDQYLSKQDGKIYRSRDPQLCR K V F S K Q 1 0 1 2 0 1 2 1 0 1 1 1 0 1 1 1 0 0 1 3 0 0 18 0 2021.9946 Q8TAT6;I3L4U9;A0A0D9SFI9 Q8TAT6 99 116 NPLOC4 Nuclear protein localization protein 4 homolog yes no 2 1.0443E-07 89.959 By matching By MS/MS By matching 1 1 1 1.0106 0.93408 3.9596 3 Median 0.97234 0.93574 NaN 1 0 Median 1.0106 0.87295 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0658 0.93408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4635000 2240600 2394300 2986800 1468200 1518600 1535200 715630 819600 0 0 0 112970 56820 56153 0 0 0 0 0 0 35596 3456 37404 187524;187525;187526 190453 190453 1 VFGDILDFAYTSR AGGSRELEMHTISSKVFGDILDFAYTSRIV SKVFGDILDFAYTSRIVVRLESFPELMTAA K V F S R I 1 1 0 2 0 0 0 1 0 1 1 0 0 2 0 1 1 0 1 1 0 0 13 0 1502.7405 Q9HBE1 Q9HBE1 113 125 PATZ1 POZ-, AT hook-, and zinc finger-containing protein 1 yes yes 2 0.042256 43.512 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35597 4017 37405 187527 190454 190454 1 VFGFSLITNK STVPEVIVARHCGLRVFGFSLITNKVIMDY HCGLRVFGFSLITNKVIMDYESLEKANHEE R V F N K V 0 0 1 0 0 0 0 1 0 1 1 1 0 2 0 1 1 0 0 1 0 0 10 0 1124.623 P00491 P00491 235 244 PNP Purine nucleoside phosphorylase yes yes 2 0.002391 60.436 By MS/MS By matching By matching By matching 1 2 1 1 1.362 1.1458 11.236 5 Median 1.1147 1.0106 NaN 1 0 Median 1.4642 1.2498 11.759 2 0 Median 1.0983 1.0605 NaN 1 0 Median 1.362 1.1458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51317000 24356000 26961000 40794000 19780000 21014000 8665600 3631900 5033700 1693000 879800 813210 164200 63913 100290 0 0 0 0 0 0 35598 1821 37406 187528;187529;187530;187531;187532 190455;190456 190456 2 VFGGTVHK KPVLGICYGMQMMNKVFGGTVHKKSVREDG GMQMMNKVFGGTVHKKSVREDGVFNISVDN K V F H K K 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 843.46029 P49915 P49915 113 120 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.049624 34.824 By MS/MS By matching By matching 2 1 1 1.1941 1.1058 11.591 4 Median NaN NaN NaN 0 0 Median 1.1616 1.0231 4.2228 2 0 Median 1.2181 1.2943 NaN 1 0 Median 1.3257 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3898000 1785600 2112400 0 0 0 3334800 1527100 1807700 494310 227660 266660 68831 30841 37990 0 0 0 0 0 0 35599 2405 37407 187533;187534;187535;187536 190457 190457 1 VFGINKY LSVLLPKLPQFHGVRVFGINKY________ LPQFHGVRVFGINKY_______________ R V F K Y - 0 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 1 0 0 7 1 839.45414 Q53FV1;F8VXD5;F8VWV8 Q53FV1 147 153 ORMDL2 ORM1-like protein 2 yes no 2 0.031013 58.661 By matching By MS/MS 1 3 1.5019 1.0018 40.207 4 Linear 1.1457 1.083 NaN 1 0 Median 1.2331 1.0157 44.737 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16119000 6969400 9149200 5138800 2270200 2868700 10980000 4699200 6280500 0 0 0 0 0 0 0 0 0 0 0 0 35600 3029 37408 187537;187538;187539;187540 190458 190458 1 VFGIQLK VYPEIIERAGYSLEKVFGIQLKEIDKNDHL RAGYSLEKVFGIQLKEIDKNDHLYILLSTL K V F L K E 0 0 0 0 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 803.49052 Q9UNF1;Q5H909;Q5H907 Q9UNF1 331 337 MAGED2 Melanoma-associated antigen D2 yes no 2 0.025249 54.525 By MS/MS By matching By matching 1 1 1 1.3363 1.1293 2.176 3 Median 1.2065 1.1118 NaN 1 0 Median 1.343 1.1606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3363 1.1293 NaN 1 0 Median 8869600 3962000 4907600 6974800 3185800 3789000 1658900 687200 971690 0 0 0 0 0 0 0 0 0 235900 88967 146940 35601 4343 37409 187541;187542;187543 190459;190460 190460 2 VFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD ALELTGLKVFGNEIKLEKPKGKDSKKERDA K V F I K L 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 805.4334 P19338 P19338 371 377 NCL Nucleolin yes yes 2 0.012264 78.616 By MS/MS By MS/MS By matching By matching By matching 1 2 1 1 1 1.2302 1.1082 14.13 6 Median 0.97058 0.93862 NaN 1 0 Median 1.253 1.0777 3.5546 2 0 Median 1.0527 1.1113 NaN 1 0 Median 1.68 1.4433 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.261 1.1238 NaN 1 0 Median 80444000 36177000 44267000 12610000 6261400 6348800 51082000 22045000 29037000 4996700 2335600 2661000 2191800 894750 1297100 0 0 0 9563000 4640000 4922900 35602 2063 37410 187544;187545;187546;187547;187548;187549 190461;190462 190461 2 VFGNEIKLEKPK SAEDLEKALELTGLKVFGNEIKLEKPKGKD GLKVFGNEIKLEKPKGKDSKKERDARTLLA K V F P K G 0 0 1 0 0 0 2 1 0 1 1 3 0 1 1 0 0 0 0 1 0 0 12 2 1400.8028 P19338 P19338 371 382 NCL Nucleolin yes yes 2;3 0.00020794 63.76 By MS/MS By MS/MS By MS/MS 5 5 2 0.91555 0.89364 20.072 12 Median 0.80346 0.82466 6.2884 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96416 1.0503 24.703 5 0 Median 0.97475 1.0056 16.884 2 0 Median 120030000 63131000 56894000 59421000 33097000 26324000 0 0 0 0 0 0 0 0 0 44978000 22429000 22549000 15627000 7605900 8020600 35603 2063 37411 187550;187551;187552;187553;187554;187555;187556;187557;187558;187559;187560;187561 190463;190464;190465;190466;190467;190468;190469;190470;190471;190472;190473;190474;190475;190476;190477 190475 15 VFGPGIEGK ARVKVEPAVDTSRIKVFGPGIEGKDVFREA DTSRIKVFGPGIEGKDVFREATTDFTVDSR K V F G K D 0 0 0 0 0 0 1 3 0 1 0 1 0 1 1 0 0 0 0 1 0 0 9 0 902.48617 O75369;E7EN95 O75369 1233 1241 FLNB Filamin-B yes no 2 0.0022569 73.248 By MS/MS 1 1.1118 0.99445 NaN 1 Median NaN NaN NaN 0 0 Median 1.1118 0.99445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47683000 20225000 27458000 0 0 0 47683000 20225000 27458000 0 0 0 0 0 0 0 0 0 0 0 0 35604 1664 37412 187562 190478 190478 1 VFGPGIEGKDVFR ARVKVEPAVDTSRIKVFGPGIEGKDVFREA IKVFGPGIEGKDVFREATTDFTVDSRPLTQ K V F F R E 0 1 0 1 0 0 1 3 0 1 0 1 0 2 1 0 0 0 0 2 0 0 13 1 1419.751 O75369;E7EN95 O75369 1233 1245 FLNB Filamin-B yes no 3 2.9198E-07 100.55 By MS/MS By matching 2 1 1.0324 1.0693 97.703 3 Median 0.44478 0.47365 115.16 2 0 Median 1.2526 1.2066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14600000 8138400 6462100 12766000 7462000 5303700 1834800 676390 1158400 0 0 0 0 0 0 0 0 0 0 0 0 35605 1664 37413 187563;187564;187565 190479;190480 190480 2 VFGPGVER YRVNIGQGSHPQKVKVFGPGVERSGLKANE SHPQKVKVFGPGVERSGLKANEPTHFTVDC K V F E R S 0 1 0 0 0 0 1 2 0 0 0 0 0 1 1 0 0 0 0 2 0 0 8 0 859.4552 O75369;E7EN95 O75369 747 754 FLNB Filamin-B yes no 2 0.0072183 70.525 By MS/MS By MS/MS 2 4 0.94299 0.80596 70.853 5 Median 0.4074 0.398 106.39 2 0 Median 1.0077 0.80596 19.676 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38010000 19316000 18694000 5986300 3797100 2189200 32023000 15519000 16504000 0 0 0 0 0 0 0 0 0 0 0 0 35606 1664 37414 187566;187567;187568;187569;187570;187571 190481;190482;190483;190484;190485 190481 5 VFGPTIVAHAVPNPDPVTMLQDIK AQSPHTKMDVANLAKVFGPTIVAHAVPNPD AVPNPDPVTMLQDIKRQPKVVERLLSLPLE K V F I K R 2 0 1 2 0 1 0 1 1 2 1 1 1 1 4 0 2 0 0 4 0 0 24 0 2558.3567 Q9H0H5;H0YIK5;F8VZ41 Q9H0H5 499 522 RACGAP1 Rac GTPase-activating protein 1 yes no 3 0.060301 6.9526 By MS/MS 1 0.54054 0.57417 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54054 0.57417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2070500 1308000 762440 0 0 0 0 0 0 2070500 1308000 762440 0 0 0 0 0 0 0 0 0 35607 3926 37415 187572 190486 190486 1 VFGSDSALQIHLR AEDPFFKHKCRFCAKVFGSDSALQIHLRSH AKVFGSDSALQIHLRSHTGERPFKCNICGN K V F L R S 1 1 0 1 0 1 0 1 1 1 2 0 0 1 0 2 0 0 0 1 0 0 13 0 1441.7678 A0A140TA74;A0A140TA70;Q9BXA9;A9JR48;A0A087WXW6;H3BSM9;Q9NSC2;H0YFS7;E7EW59;F5H433;Q9Y467 A0A140TA74 424 436 SALL3;SALL1;SALL2 Sal-like protein 3;Sal-like protein 1;Sal-like protein 2 yes no 3 0.00026047 73.848 By MS/MS 2 1.1155 1.227 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1155 1.227 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5496600 2894700 2601900 0 0 0 0 0 0 5496600 2894700 2601900 0 0 0 0 0 0 0 0 0 35608 315 37416 187573;187574 190487;190488 190488 2 VFGTYTDVTPR LWRRPITGTHLYQYRVFGTYTDVTPRQFFN YQYRVFGTYTDVTPRQFFNVQLDTEYRKKW R V F P R Q 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 3 0 1 2 0 0 11 0 1254.6245 Q9NQZ5;C9JTD3 Q9NQZ5 167 177 STARD7 StAR-related lipid transfer protein 7, mitochondrial yes no 2 0.00016513 80.688 By MS/MS By MS/MS 1 2 1.2183 1.1409 64.501 3 Plateau 1.2183 1.1409 NaN 1 0 Median 0.68598 0.60426 75.017 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18669000 9012600 9656200 13501000 6096700 7404100 5167900 2915900 2252100 0 0 0 0 0 0 0 0 0 0 0 0 35609 4072 37417 187575;187576;187577 190489;190490 190489 2 VFGWVHR VKIGALEGYRGQRVKVFGWVHRLRRQGKNL GYRGQRVKVFGWVHRLRRQGKNLMFLVLRD K V F H R L 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 2 0 0 7 0 899.47661 O43776;K7EQ35;K7EIU7;K7EPK2;K7EMQ6 O43776 130 136 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2 0.0019278 120.76 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.3532 1.2331 14.147 4 Median 1.3929 1.3145 NaN 1 0 Median 1.3374 1.1567 NaN 1 0 Median 1.3693 1.4125 NaN 1 0 Median 1.2228 1.0255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48799000 20747000 28052000 25395000 10396000 14999000 12171000 5350700 6820600 4882200 2207200 2675100 6350100 2793600 3556500 0 0 0 0 0 0 35610 1589 37418 187578;187579;187580;187581 190491;190492;190493;190494;190495;190496;190497;190498 190495 8 VFHAGFGVVLGEDK AAAQMIGWYDPKVTRVFHAGFGVVLGEDKK RVFHAGFGVVLGEDKKKFKTRSGETVRLMD R V F D K K 1 0 0 1 0 0 1 3 1 0 1 1 0 2 0 0 0 0 0 3 0 0 14 0 1473.7616 P54136 P54136 436 449 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.00045882 47.189 By MS/MS By matching By matching By matching 1 2 1 1 1.3373 1.2603 13.793 5 Median 1.0728 1.0315 NaN 1 0 Median 1.5045 1.2929 19.472 2 0 Median 1.3293 1.2603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5235 1.2813 NaN 1 0 Median 8980000 3897200 5082800 3359200 1634500 1724700 3558500 1524200 2034200 1077700 340850 736860 0 0 0 0 0 0 984630 397600 587030 35611 2480 37419 187582;187583;187584;187585;187586 190499;190500 190499 2 VFHAGFGVVLGEDKKK AAAQMIGWYDPKVTRVFHAGFGVVLGEDKK FHAGFGVVLGEDKKKFKTRSGETVRLMDLL R V F K K F 1 0 0 1 0 0 1 3 1 0 1 3 0 2 0 0 0 0 0 3 0 0 16 2 1729.9515 P54136 P54136 436 451 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3;4 8.5727E-05 48.823 By MS/MS 2 1.1077 1.1303 8.6418 2 Median 1.1077 1.1303 8.6418 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40796000 19192000 21604000 40796000 19192000 21604000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35612 2480 37420 187587;187588 190501;190502;190503;190504 190501 4 VFHGADSDIEWLQK MYILNESLTDPAIVKVFHGADSDIEWLQKD KVFHGADSDIEWLQKDFGLYVVNMFDTHQA K V F Q K D 1 0 0 2 0 1 1 1 1 1 1 1 0 1 0 1 0 1 0 1 0 0 14 0 1643.7944 Q01780 Q01780 364 377 EXOSC10 Exosome component 10 yes yes 3 0.00024548 56.122 By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1.1102 1.0351 17.618 6 Median NaN NaN NaN 0 0 Median 1.0129 0.91529 NaN 1 0 Median 1.2049 1.3111 NaN 1 0 Median 1.3091 1.1295 23.841 2 0 Median 1.0867 1.1227 NaN 1 0 Median 1.0563 0.91397 NaN 1 0 Median 18295000 8214800 10080000 0 0 0 363440 163430 200010 14175000 6269100 7906200 963820 364840 598980 2651800 1360500 1291400 140730 57017 83711 35613 2691 37421 187589;187590;187591;187592;187593;187594 190505;190506 190506 2 VFHLLGVDTLVVTNAAGGLNPK MYEGYPLWKVTFPVRVFHLLGVDTLVVTNA DTLVVTNAAGGLNPKFEVGDIMLIRDHINL R V F P K F 2 0 2 1 0 0 0 3 1 0 4 1 0 1 1 0 2 0 0 4 0 0 22 0 2234.2423 P00491;G3V5M2;G3V393 P00491 102 123 PNP Purine nucleoside phosphorylase yes no 3 6.947E-24 118.72 By MS/MS By MS/MS By matching 1 1 1 1.0845 0.90938 8.0289 3 Plateau 0.87405 0.85592 NaN 1 0 Median 1.0845 0.90938 NaN 1 0 Median 0.7953 0.77564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25036000 11962000 13074000 1602800 914630 688210 22921000 10795000 12126000 512150 251650 260510 0 0 0 0 0 0 0 0 0 35614 1821 37422 187595;187596;187597 190507;190508;190509 190508 3 VFHLPTTTFIGGQESALPLR TVGGFYGLDESDLDKVFHLPTTTFIGGQES TTTFIGGQESALPLREIIRRLEMAYCQHIG K V F L R E 1 1 0 0 0 1 1 2 1 1 3 0 0 2 2 1 3 0 0 1 0 0 20 0 2183.1739 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;C9J4G7 E9PDF2 196 215 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 3 0.014849 24.3 By MS/MS 1 0.73198 0.78307 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73198 0.78307 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2345900 1429100 916810 0 0 0 0 0 0 2345900 1429100 916810 0 0 0 0 0 0 0 0 0 35615 912 37423 187598 190510 190510 1 VFIASSSGFVAIKK ______________________________ RVFIASSSGFVAIKKKQQDVVRFLEANKIE R V F K K K 2 0 0 0 0 0 0 1 0 2 0 2 0 2 0 3 0 0 0 2 0 0 14 1 1452.8341 Q9UJC5 Q9UJC5 5 18 SH3BGRL2 SH3 domain-binding glutamic acid-rich-like protein 2 yes yes 3 0.0030597 32.275 By matching By matching By MS/MS 1 1 1 0.84272 0.80486 14.281 3 Median 0.84272 0.78918 NaN 1 0 Median 1.1767 1.02 NaN 1 0 Median 0.7884 0.80486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5657600 2879100 2778500 1571800 901250 670590 911090 344480 566610 3174700 1633300 1541300 0 0 0 0 0 0 0 0 0 35616 4296 37424 187599;187600;187601 190511 190511 1 VFIDKQTNLSK LLQMFMPFGNVVSAKVFIDKQTNLSKCFGF VSAKVFIDKQTNLSKCFGFVSYDNPVSAQA K V F S K C 0 0 1 1 0 1 0 0 0 1 1 2 0 1 0 1 1 0 0 1 0 0 11 1 1291.7136 G5EA30;Q92879;E9PC62;A0A0J9YXJ0;Q5VZZ6;A0A0J9YX66;A0A1B0GU44;A0A1B0GUN8;O95319 G5EA30 460 470 CELF1;CELF2 CUGBP Elav-like family member 1;CUGBP Elav-like family member 2 no no 3 0.06275 24.853 By MS/MS 1 1.3767 1.1547 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3767 1.1547 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1003700 488900 514820 0 0 0 0 0 0 0 0 0 1003700 488900 514820 0 0 0 0 0 0 35617 1133;294 37425 187602 190512 190512 1 VFIDQINR PSAQGRQKESGSKWKVFIDQINRSLENYEP ESGSKWKVFIDQINRSLENYEPCSSQNCSC K V F N R S 0 1 1 1 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1003.5451 Q8NBL1;F8WEW4;B4DVA9;H7C5H0 Q8NBL1 34 41 POGLUT1 Protein O-glucosyltransferase 1 yes no 2 0.014705 79.116 By MS/MS By MS/MS 2 1 1.0638 1.045 28.012 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78973 0.85721 NaN 1 0 Median 1.433 1.2739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3254500 1449600 1804900 0 0 0 0 0 0 1992300 999730 992540 1262200 449830 812360 0 0 0 0 0 0 35618 3405 37426 187603;187604;187605 190513;190514;190515 190513 3 VFIDQNLSPGK MAKDAGLIEANGELKVFIDQNLSPGKGVVS GELKVFIDQNLSPGKGVVSLVAVHPSTVNP K V F G K G 0 0 1 1 0 1 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 11 0 1216.6452 F5H452;Q5JSB6;Q5JSB5;Q14186 F5H452 16 26 TFDP1 Transcription factor Dp-1 yes no 2 0.00018924 76.465 By matching By matching By MS/MS 1 1 1 0.90533 0.83349 21.654 3 Median 0.8864 0.83349 NaN 1 0 Median 1.3946 1.1964 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90533 0.81226 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9021000 4524600 4496300 905870 533330 372530 1546600 628260 918380 0 0 0 6568500 3363100 3205400 0 0 0 0 0 0 35619 1031 37427 187606;187607;187608 190516;190517 190517 2 VFIEDVSR FEEARKKALKLGAKKVFIEDVSREFVEEFI LKLGAKKVFIEDVSREFVEEFIWPAIQSSA K V F S R E 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 2 0 0 8 0 963.50255 P00966;Q5T6L5;Q5T6L6 P00966 59 66 ASS1 Argininosuccinate synthase yes no 2 0.024929 63.48 By MS/MS 1 1.6994 1.4389 NaN 1 Median NaN NaN NaN 0 0 Median 1.6994 1.4389 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5520600 1479300 4041300 0 0 0 5520600 1479300 4041300 0 0 0 0 0 0 0 0 0 0 0 0 35620 1828 37428 187609 190518 190518 1 VFIGNLNTALVK SNVTNKNDPKSINSRVFIGNLNTALVKKSD NSRVFIGNLNTALVKKSDVETIFSKYGRVA R V F V K K 1 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 2 0 0 12 0 1287.7551 Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1;Q5QPM2 Q9UKM9 23 34 RALY RNA-binding protein Raly yes no 2 5.2871E-06 99.815 By matching By matching By MS/MS By MS/MS 1 1 1 8 1.0203 1.0712 16.024 11 Median 1.3274 1.3042 NaN 1 0 Median 1.926 1.6771 NaN 1 0 Median 0.9824 0.94668 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0169 1.057 4.5392 8 0 Median NaN NaN NaN 0 0 Median 323880000 159690000 164200000 1980400 918490 1061900 118930 35312 83621 24939000 12786000 12152000 0 0 0 296850000 145950000 150900000 0 0 0 35621 4313 37429 187610;187611;187612;187613;187614;187615;187616;187617;187618;187619;187620 190519;190520;190521;190522;190523;190524;190525;190526;190527;190528;190529;190530;190531;190532 190525 14 VFIGNLNTALVKK SNVTNKNDPKSINSRVFIGNLNTALVKKSD SRVFIGNLNTALVKKSDVETIFSKYGRVAG R V F K K S 1 0 2 0 0 0 0 1 0 1 2 2 0 1 0 0 1 0 0 2 0 0 13 1 1415.85 Q9UKM9;Q5QPL9;Q5QPM0;Q5QPM1;Q5QPM2 Q9UKM9 23 35 RALY RNA-binding protein Raly yes no 2;3 0.00052825 48.659 By MS/MS 3 1.0225 1.0837 18.691 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0225 1.0837 18.691 3 0 Plateau NaN NaN NaN 0 0 Median 42424000 20826000 21598000 0 0 0 0 0 0 0 0 0 0 0 0 42424000 20826000 21598000 0 0 0 35622 4313 37430 187621;187622;187623 190533;190534;190535 190534 3 VFIGNLNTLVVK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV R V F V K K 0 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 12 0 1315.7864 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1;G3V4M8;G3V2H6 B2R5W2 18 29 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2 6.3504E-06 125.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 5 7 9 1.1563 1.0614 13.623 29 Median 1.053 0.98238 47.027 2 0 Median 1.3927 1.2016 6.8411 2 0 Median 1.0514 1.0614 14.017 5 0 Median 1.234 1.0065 14.913 5 0 Median 1.0808 1.1104 5.3092 7 0 Median 1.2451 1.0043 5.7464 8 1 Median 3931900000 1878800000 2053100000 13438000 5617400 7820600 29329000 12460000 16869000 202350000 97756000 104600000 474580000 210560000 264010000 2633200000 1296600000 1336600000 579020000 255830000 323190000 35623 582 37431 187624;187625;187626;187627;187628;187629;187630;187631;187632;187633;187634;187635;187636;187637;187638;187639;187640;187641;187642;187643;187644;187645;187646;187647;187648;187649;187650;187651;187652;187653 190536;190537;190538;190539;190540;190541;190542;190543;190544;190545;190546;190547;190548;190549;190550;190551;190552;190553;190554;190555;190556;190557;190558;190559;190560;190561;190562;190563;190564;190565;190566;190567;190568;190569;190570;190571;190572;190573;190574 190560 39 VFIGNLNTLVVKK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG R V F K K S 0 0 2 0 0 0 0 1 0 1 2 2 0 1 0 0 1 0 0 3 0 0 13 1 1443.8813 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V555;G3V575;G3V251;G3V3K6;G3V5X6;B4DSU6;B2RXH8;O60812;A0A0G2JNQ3;B7ZW38;A0A0G2JPF8;P0DMR1;G3V4M8;G3V2H6 B2R5W2 18 30 HNRNPC;HNRNPCL2;HNRNPCL1;HNRNPCL3;HNRNPCL4 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 4 yes no 2;3 2.6865E-06 117.7 By matching By matching By MS/MS By matching 2 1 10 2 1.1453 1.2187 12.597 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1806 1.2633 9.7861 2 0 Median 1.4436 1.2855 NaN 1 0 Median 1.1424 1.2212 12.966 10 0 Median 1.2344 1.0765 15.954 2 0 Median 330050000 158300000 171750000 0 0 0 0 0 0 2687300 1230000 1457300 583160 234480 348680 325480000 156280000 169210000 1300900 563800 737070 35624 582 37432 187654;187655;187656;187657;187658;187659;187660;187661;187662;187663;187664;187665;187666;187667;187668 190575;190576;190577;190578;190579;190580;190581;190582;190583;190584;190585;190586;190587;190588;190589 190584 15 VFIPHGLIMDR DLFCIPNHYAEDLERVFIPHGLIMDRTERL DLERVFIPHGLIMDRTERLARDVMKEMGGH R V F D R T 0 1 0 1 0 0 0 1 1 2 1 0 1 1 1 0 0 0 0 1 0 0 11 0 1296.7013 P00492 P00492 35 45 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2;3 0.0004849 68.735 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 2 1 1 1.0582 0.91396 8.6313 11 Median 1.0661 1.0148 10.571 3 0 Plateau 1.1312 0.96314 3.9901 4 0 Median 0.80454 0.84139 11.699 2 0 Median 1.0582 0.85687 NaN 1 0 Median 1.0186 0.98325 NaN 1 0 Median NaN NaN NaN 0 0 Median 144190000 70467000 73722000 127390000 62273000 65117000 11810000 5671700 6138000 4619700 2332500 2287200 67413 36551 30861 302650 153480 149160 0 0 0 35625 1822 37433 187669;187670;187671;187672;187673;187674;187675;187676;187677;187678;187679 190590;190591;190592;190593;190594;190595;190596;190597;190598;190599 190595 10 VFIPVLQSVTAR WNGGVFWFSLLLFYRVFIPVLQSVTARIIG FYRVFIPVLQSVTARIIGDPSLHGDVWSWL R V F A R I 1 1 0 0 0 1 0 0 0 1 1 0 0 1 1 1 1 0 0 3 0 0 12 0 1328.7816 O14681;E9PLB8;E9PL33;E9PM05;E9PS58;E9PK61 O14681 92 103 EI24 Etoposide-induced protein 2.4 homolog yes no 2 0.011268 36.693 By MS/MS 1 1.3932 1.1694 NaN 1 Median NaN NaN NaN 0 0 Median 1.3932 1.1694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1837600 795040 1042600 0 0 0 1837600 795040 1042600 0 0 0 0 0 0 0 0 0 0 0 0 35626 1489 37434 187680 190600 190600 1 VFITDDFHDMMPK YGSKKSDYIKLYVRRVFITDDFHDMMPKYL RRVFITDDFHDMMPKYLNFVKGVVDSDDLP R V F P K Y 0 0 0 3 0 0 0 0 1 1 0 1 2 2 1 0 1 0 0 1 0 0 13 0 1594.716 P14625 P14625 416 428 HSP90B1 Endoplasmin yes yes 2;3 0.0096284 36.424 By MS/MS By MS/MS By matching 2 2 1 1.1085 0.97492 11.524 5 Median 1.0498 1.0407 20.323 2 0 Median 1.1241 0.98539 1.5111 2 0 Median 0.87616 0.91289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19293000 9337200 9955400 9318700 4755800 4562900 9334800 4187500 5147300 639140 393980 245160 0 0 0 0 0 0 0 0 0 35627 2006 37435 187681;187682;187683;187684;187685 190601;190602;190603 190603 3 VFIWNNMGSQGIQETGK GSPEMAENESEGQTKVFIWNNMGSQGIQET IWNNMGSQGIQETGKTRRKNQTTKRFIYNI K V F G K T 0 0 2 0 0 2 1 3 0 2 0 1 1 1 0 1 1 1 0 1 0 0 17 0 1907.92 Q96DT7 Q96DT7 557 573 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 2 4.9176E-05 62.408 By MS/MS 2 0.7677 0.83247 0.60874 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7677 0.83247 0.60874 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8703700 5013700 3690100 0 0 0 0 0 0 8703700 5013700 3690100 0 0 0 0 0 0 0 0 0 35628 3628 37436 187686;187687 190604;190605 190605 2 VFKDFSELEPDKFQNK VNGVAKIHSDIVKTKVFKDFSELEPDKFQN FKDFSELEPDKFQNKTNGITPRRWLLLCNP K V F N K T 0 0 1 2 0 1 2 0 0 0 1 3 0 3 1 1 0 0 0 1 0 0 16 2 1969.9785 P06737;E9PK47 P06737 468 483 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 3;4 0.0016955 33.265 By MS/MS 2 0.99819 1.0464 12.562 2 Median 0.99819 1.0464 12.562 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15998000 7446600 8551500 15998000 7446600 8551500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35629 1874 37437 187688;187689 190606;190607;190608 190607 3 VFLADQPIEAPEEPRR KEKEYSVLNAVDQARVFLADQPIEAPEEPR FLADQPIEAPEEPRRNLQSKTELTPEERAQ R V F R R N 2 2 0 1 0 1 3 0 0 1 1 0 0 1 3 0 0 0 0 1 0 0 16 1 1865.9636 P46939;Q5T097 P46939 2625 2640 UTRN Utrophin yes no 3 1.3352E-20 136.51 By MS/MS 1 0.38045 0.41344 NaN 1 Median 0.38045 0.41344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21855000 15661000 6193600 21855000 15661000 6193600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35630 2349 37438 187690 190609 190609 1 VFLALAAK YSPKMQLVCCRAIVKVFLALAAKGPVLRNC CCRAIVKVFLALAAKGPVLRNCISTVVHQG K V F A K G 3 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 831.52182 P78527 P78527 464 471 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 1;2 0.0079765 87.582 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 4 2 4 1.2562 1.2287 18.386 19 Median 1.0998 1.0354 11.75 3 0 Median 1.5036 1.3396 11.726 3 0 Median 1.0377 1.1396 12.162 3 0 Median 1.57 1.5591 7.2755 4 0 Linear 1.1185 1.18 45.603 2 0 Median 1.3076 1.1206 12.912 4 0 Median 82575000 39330000 43244000 20194000 10776000 9418000 24516000 10163000 14353000 28950000 14531000 14419000 3589000 1311100 2277900 3301600 1721400 1580200 2024500 827420 1197100 35631 2647 37439 187691;187692;187693;187694;187695;187696;187697;187698;187699;187700;187701;187702;187703;187704;187705;187706;187707;187708;187709 190610;190611;190612;190613;190614;190615;190616;190617;190618;190619;190620 190610 9 VFLATNSDYK GKLPLLLSRMKEVGKVFLATNSDYKYTDKI KEVGKVFLATNSDYKYTDKIMTYLFDFPHG K V F Y K Y 1 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 1 0 1 1 0 0 10 0 1156.5764 P49902;Q5JUV4 P49902 245 254 NT5C2 Cytosolic purine 5-nucleotidase yes no 2 0.00033784 110.87 By MS/MS By MS/MS By matching 1 1 1 1.2939 1.22 116.66 3 Median 1.2939 1.22 NaN 1 0 Median 1.0012 0.85236 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7.31 7.5096 NaN 1 0 Median 17032000 6332700 10699000 9885200 4218200 5667100 4480700 1923900 2556800 0 0 0 0 0 0 0 0 0 2666100 190680 2475400 35632 2403 37440 187710;187711;187712 190621;190622;190623 190622 3 VFLDFFTYAPPK MAQKEAVIKHSLVHKVFLDFFTYAPPKLRS VHKVFLDFFTYAPPKLRSEMIEAIREAVVY K V F P K L 1 0 0 1 0 0 0 0 0 0 1 1 0 3 2 0 1 0 1 1 0 0 12 0 1443.7438 Q15397 Q15397 331 342 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.018991 33.263 By MS/MS 1 0.79175 0.75396 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79175 0.75396 NaN 1 0 Median NaN NaN NaN 0 0 Median 4906900 2606600 2300300 0 0 0 0 0 0 0 0 0 0 0 0 4906900 2606600 2300300 0 0 0 35633 2947 37441 187713 190624 190624 1 VFLDPNILSDDGTVALR QRVLYVQDSLEGEARVFLDPNILSDDGTVA LDPNILSDDGTVALRGYAFSEDGEYFAYGL R V F L R G 1 1 1 3 0 0 0 1 0 1 3 0 0 1 1 1 1 0 0 2 0 0 17 0 1843.968 A0A499FJL1;P48147 A0A499FJL1 46 62 PREP Prolyl endopeptidase yes no 2 2.8484E-07 92.925 By MS/MS By MS/MS By matching 2 2 1 0.80495 0.79471 19.402 5 Median 0.80475 0.78864 4.975 2 0 Median 0.91764 0.7951 0.069736 2 0 Median 0.49893 0.51503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19437000 10097000 9339400 9642300 5197300 4445000 9449300 4678900 4770400 344950 220960 123990 0 0 0 0 0 0 0 0 0 35634 478 37442 187714;187715;187716;187717;187718 190625;190626;190627;190628;190629;190630;190631 190629 7 VFLENVIR RISGLIYEETRGVLKVFLENVIRDAVTYTE ETRGVLKVFLENVIRDAVTYTEHAKRKTVT K V F I R D 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 8 0 988.57057 P62805 P62805 61 68 HIST1H4A Histone H4 yes yes 2 3.4997E-13 154.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 5 8 7 8 1.3213 1.0826 27.623 38 Median 1.0215 0.99048 26.941 5 0 Median 1.5613 1.3358 63.829 6 0 Median 0.94147 0.96217 13.036 5 0 Median 1.4027 1.2107 7.4678 8 0 Median 0.9717 0.99139 3.0246 7 0 Median 1.3755 1.1242 7.868 7 0 Median 7947900000 3452000000 4495800000 264560000 103670000 160890000 236920000 87762000 149160000 281250000 138830000 142420000 33873000 12352000 21520000 3026300000 1538400000 1487900000 4105000000 1571000000 2533900000 35635 2597 37443 187719;187720;187721;187722;187723;187724;187725;187726;187727;187728;187729;187730;187731;187732;187733;187734;187735;187736;187737;187738;187739;187740;187741;187742;187743;187744;187745;187746;187747;187748;187749;187750;187751;187752;187753;187754;187755;187756;187757 190632;190633;190634;190635;190636;190637;190638;190639;190640;190641;190642;190643;190644;190645;190646;190647;190648;190649;190650;190651;190652;190653;190654;190655;190656;190657;190658;190659;190660;190661;190662;190663;190664;190665;190666;190667;190668;190669;190670;190671;190672;190673;190674;190675;190676;190677;190678;190679;190680;190681;190682;190683;190684;190685;190686;190687;190688;190689;190690;190691;190692;190693;190694;190695;190696;190697;190698;190699;190700;190701;190702;190703;190704;190705;190706;190707;190708 190704 77 VFLENVIRDAVTYTEHAK RISGLIYEETRGVLKVFLENVIRDAVTYTE ENVIRDAVTYTEHAKRKTVTAMDVVYALKR K V F A K R 2 1 1 1 0 0 2 0 1 1 1 1 0 1 0 0 2 0 1 3 0 0 18 1 2104.0953 P62805 P62805 61 78 HIST1H4A Histone H4 yes yes 3;4 2.3677E-13 148.24 By matching By MS/MS By MS/MS 1 7 9 1.1941 1.0574 14.164 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96357 1.2172 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0173 1.1193 12.901 7 0 Median 1.3048 1.038 16.147 9 0 Median 1224500000 518030000 706480000 0 0 0 0 0 0 12513000 6177000 6335700 0 0 0 42697000 20996000 21701000 1169300000 490850000 678440000 35636 2597 37444 187758;187759;187760;187761;187762;187763;187764;187765;187766;187767;187768;187769;187770;187771;187772;187773;187774 190709;190710;190711;190712;190713;190714;190715;190716;190717;190718;190719;190720;190721;190722;190723 190719 15 VFLENVIRDAVTYTEHAKR RISGLIYEETRGVLKVFLENVIRDAVTYTE NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ K V F K R K 2 2 1 1 0 0 2 0 1 1 1 1 0 1 0 0 2 0 1 3 0 0 19 2 2260.1964 P62805 P62805 61 79 HIST1H4A Histone H4 yes yes 4 9.0517E-06 49.049 By MS/MS 1 1.2887 1.1805 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2887 1.1805 NaN 1 0 Median 10901000 4060300 6840400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10901000 4060300 6840400 35637 2597 37445 187775 190724 190724 1 VFLEYPPILVK V F V K 0 0 0 0 0 0 1 0 0 1 2 1 0 1 2 0 0 0 1 2 0 0 11 0 1316.7744 REV__Q93070 yes no 2 0.0025774 52.716 By matching By matching By MS/MS By matching 1 1 4 3 1.033 1.0134 12.983 9 Median NaN NaN NaN 0 0 Median 1.1618 1.0134 NaN 1 0 Median 1.0259 1.1334 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.005 0.98793 10.176 4 0 Median 1.4515 1.2097 21.82 3 0 Plateau 39540000 18054000 21487000 0 0 0 291990 95748 196240 612950 329700 283240 0 0 0 36541000 16768000 19773000 2094100 860310 1233800 + 35638 4527 37446 187776;187777;187778;187779;187780;187781;187782;187783;187784 190725;190726 190726 2 VFLGNVETFIK KLRINLNLIYDHNPKVFLGNVETFIKQIDS HNPKVFLGNVETFIKQIDSVNHINLFFTEL K V F I K Q 0 0 1 0 0 0 1 1 0 1 1 1 0 2 0 0 1 0 0 2 0 0 11 0 1265.702 O95163;F5H2T0 O95163 762 772 IKBKAP Elongator complex protein 1 yes no 2 0.0015026 58.676 By MS/MS By matching 2 1 1.3001 1.2598 14.975 3 Median 1.4003 1.3684 11.692 2 0 Median 1.3001 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15079000 6517800 8561500 7100800 2893500 4207400 7978500 3624400 4354100 0 0 0 0 0 0 0 0 0 0 0 0 35639 1749 37447 187785;187786;187787 190727;190728;190729 190727 3 VFLHLADIYAK TKVFERAVQYNEPLKVFLHLADIYAKSEKF EPLKVFLHLADIYAKSEKFQEAGELYNRML K V F A K S 2 0 0 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 1 1 0 0 11 0 1288.718 Q14690;A0A3B3IUD7 Q14690 1693 1703 PDCD11 Protein RRP5 homolog yes no 2;3 0.009331 29.926 By MS/MS By matching 3 3 1.0828 1.1744 34.702 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1242 1.2528 14.924 3 0 Median NaN NaN NaN 0 0 Median 1.043 1.1009 52.779 3 0 Median NaN NaN NaN 0 0 Median 15264000 7731700 7532100 0 0 0 0 0 0 10445000 5472400 4972800 0 0 0 4818700 2259300 2559300 0 0 0 35640 448 37448 187788;187789;187790;187791;187792;187793 190730;190731;190732;190733 190732 4 VFLIDLNSTHGTFLGHIR SRVHAALVYHKHLKRVFLIDLNSTHGTFLG IDLNSTHGTFLGHIRLEPHKPQQIPIDSTV R V F I R L 0 1 1 1 0 0 0 2 2 2 3 0 0 2 0 1 2 0 0 1 0 0 18 0 2039.0952 Q12972 Q12972 83 100 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes yes 3 0.0012428 27.149 By MS/MS 2 1.0159 1.0615 14.046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0159 1.0615 14.046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6043300 2812900 3230400 0 0 0 0 0 0 6043300 2812900 3230400 0 0 0 0 0 0 0 0 0 35641 2775 37449 187794;187795 190734;190735;190736 190734 3 VFLISASSK SIRITAMDTEDQGVKVFLISASSKDTGQLY EDQGVKVFLISASSKDTGQLYAALHHRILA K V F S K D 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 3 0 0 0 1 0 0 9 0 950.54368 B7Z7F3;Q9H6Z4;K7EIJ4 B7Z7F3 414 422 RANBP3 Ran-binding protein 3 yes no 2 0.00087329 93.162 By MS/MS By MS/MS By matching 1 1 1 1.166 1.093 18.707 3 Median 1.166 1.093 NaN 1 0 Median 1.1254 0.95146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6541 1.3778 NaN 1 0 Median 20210000 10637000 9573100 13751000 7706800 6044600 6031700 2760100 3271600 0 0 0 0 0 0 0 0 0 427130 170230 256900 35642 636 37450 187796;187797;187798 190737;190738 190737 2 VFLLGEEVAQYDGAYK AINQGMDEELERDEKVFLLGEEVAQYDGAY FLLGEEVAQYDGAYKVSRGLWKKYGDKRII K V F Y K V 2 0 0 1 0 1 2 2 0 0 2 1 0 1 0 0 0 0 2 2 0 0 16 0 1800.8934 P11177;C9J634;F8WF02 P11177 53 68 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 9.9353E-05 71.555 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1172 0.98547 11.715 4 Median 0.97451 0.90177 NaN 1 0 Median 1.2809 1.077 NaN 1 0 Median 0.92878 0.89582 NaN 1 0 Median 1.3067 1.121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20630000 10660000 9970100 10648000 5150100 5497800 8050000 4547500 3502500 1756500 895130 861330 175970 67453 108510 0 0 0 0 0 0 35643 1954 37451 187799;187800;187801;187802 190739;190740;190741;190742 190740 4 VFLMSESEKR YIGSAGKPHERVEQKVFLMSESEKRKKLLA RVEQKVFLMSESEKRKKLLAILEQGFDPPI K V F K R K 0 1 0 0 0 0 2 0 0 0 1 1 1 1 0 2 0 0 0 1 0 0 10 1 1224.6173 Q9BUQ8 Q9BUQ8 643 652 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3 0.00031432 66.595 By matching By MS/MS By matching 1 1 1 0.87078 0.98883 34.642 3 Median 0.67011 0.67966 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87078 0.98883 NaN 1 0 Median 1.4129 1.3578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7499100 3706100 3793000 1970600 961680 1008900 0 0 0 4249000 2193600 2055400 1279500 550830 728650 0 0 0 0 0 0 35644 3842 37452 187803;187804;187805 190743;190744 190743 2 VFLNGNKLPVK VRRAYDIAGSTKDVKVFLNGNKLPVKGFRS KDVKVFLNGNKLPVKGFRSYVDMYLKDKLD K V F V K G 0 0 2 0 0 0 0 1 0 0 2 2 0 1 1 0 0 0 0 2 0 0 11 1 1227.7339 P11388 P11388 255 265 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0066912 34.755 By matching By MS/MS By matching 1 2 1 0.77832 0.86676 38.41 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68145 0.78545 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0461 1.1475 25.746 2 0 Median 0.60202 0.54861 NaN 1 0 Median 13213000 7133600 6078900 0 0 0 0 0 0 3896600 2312800 1583800 0 0 0 9079800 4675400 4404400 236120 145440 90677 35645 1963 37453 187806;187807;187808;187809 190745;190746 190745 2 VFLQGPAPVGTPSFNR SSAPLASFSGIPGTRVFLQGPAPVGTPSFN FLQGPAPVGTPSFNRQHFSPHPWTSASNSS R V F N R Q 1 1 1 0 0 1 0 2 0 0 1 0 0 2 3 1 1 0 0 2 0 0 16 0 1685.8889 Q8IWZ3;H7C0V5;H0Y785;H0Y472;H0Y4P6 Q8IWZ3 2313 2328 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 yes no 2 0.014833 42.556 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1509700 1509700 0 1509700 1509700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35646 3329 37454 187810 190747 190747 1 VFLQNLLSVSQAR NSFMGLGQAAWKEARVFLQNLLSVSQARLR ARVFLQNLLSVSQARLRDDTELRKCAFISQ R V F A R L 1 1 1 0 0 2 0 0 0 0 3 0 0 1 0 2 0 0 0 2 0 0 13 0 1473.8304 P16930;H0YLC7 P16930 83 95 FAH Fumarylacetoacetase yes no 2 1.6731E-07 107.24 By MS/MS By MS/MS By MS/MS 2 1 1 1.0491 1.042 13.734 4 Median 1.0491 1.042 6.3884 2 0 Median 1.44 1.2549 NaN 1 0 Median 0.85027 0.90931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31327000 14169000 17159000 9972200 4912100 5060100 19909000 8408700 11500000 1446100 847710 598360 0 0 0 0 0 0 0 0 0 35647 2032 37455 187811;187812;187813;187814 190748;190749;190750;190751 190751 2 VFLQYLPAIR DTRAPMAAQGMVETRVFLQYLPAIRALWAD MVETRVFLQYLPAIRALWADSGIQNAYDRR R V F I R A 1 1 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 0 1 1 0 0 10 0 1218.7125 Q14344 Q14344 141 150 GNA13 Guanine nucleotide-binding protein subunit alpha-13 yes yes 2 0.0044487 53.17 By MS/MS By matching 1 1 1.1403 1.047 20.748 2 Median 0.9037 0.90411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4387 1.2124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3032500 1489400 1543100 2776900 1410900 1366000 0 0 0 0 0 0 255560 78487 177070 0 0 0 0 0 0 35648 2875 37456 187815;187816 190752;190753 190752 2 VFLSGMPELR GNVLRSEIVGSIKMRVFLSGMPELRLGLND SIKMRVFLSGMPELRLGLNDKVLFDNTGRG R V F L R L 0 1 0 0 0 0 1 1 0 0 2 0 1 1 1 1 0 0 0 1 0 0 10 0 1147.606 E7ENJ6;Q9BXS5;K7EJL1;K7EMG5;K7EPR4;K7EJJ1;Q9Y6Q5 E7ENJ6 202 211 AP1M1;AP1M2 AP-1 complex subunit mu-1;AP-1 complex subunit mu-2 no no 2 0.0029636 70.919 By MS/MS By matching By matching 2 1 1 1.0752 1.048 7.6988 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0515 1.048 3.8624 2 1 Median 1.2712 1.1085 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0788 0.93055 NaN 1 0 Median 14671000 5926300 8744600 0 0 0 0 0 0 13330000 5361200 7968400 949360 390790 558580 0 0 0 391970 174330 217650 35649 864;1364 37457;37458 187817;187818;187819;187820 190754;190755 190755 312 2 VFLWGSFR SAGDSHTAALTDDGRVFLWGSFRDNNGVIG ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS R V F F R D 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 1 0 1 0 0 8 0 1010.5338 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 140 147 RCC1 Regulator of chromosome condensation yes no 2 0.0032257 100.19 By matching By MS/MS By matching By MS/MS By matching 1 5 4 2 3 1.2381 1.1894 14.106 15 Median 1.5738 1.5335 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1393 1.0976 18.378 5 0 Median 1.4447 1.2105 4.0678 4 0 Median 1.1623 1.1992 0.060342 2 0 Median 1.4134 1.1474 7.136 3 0 Median 142350000 65542000 76808000 323420 149180 174240 0 0 0 109530000 51279000 58249000 13524000 5734400 7789700 13243000 5866400 7376800 5730300 2512600 3217700 35650 2061 37459 187821;187822;187823;187824;187825;187826;187827;187828;187829;187830;187831;187832;187833;187834;187835 190756;190757;190758;190759;190760;190761;190762;190763;190764;190765;190766 190758 11 VFMAHQDLR RFINHHCEPNLVPVRVFMAHQDLRFPRIAF NLVPVRVFMAHQDLRFPRIAFFSTRLIEAG R V F L R F 1 1 0 1 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1115.5546 Q9H9B1;A0A1B0GV09 Q9H9B1 1212 1220 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.044161 80.438 By MS/MS By MS/MS 1 1 0.87455 0.91433 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87455 0.91433 NaN 1 0 Median NaN NaN NaN 0 0 Median 1557900 708000 849930 0 0 0 0 0 0 0 0 0 0 0 0 1557900 708000 849930 0 0 0 35651 3997 37460 187836;187837 190767;190768 190767 1 VFMQEFK FSTVFKDDDDVVIGKVFMQEFKEGRRASHT DDDVVIGKVFMQEFKEGRRASHTAPQVLFS K V F F K E 0 0 0 0 0 1 1 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 7 0 927.45242 O15144 O15144 180 186 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2 0.010689 86.866 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.1599 1.0731 19.961 6 Median 0.99883 0.94269 15.542 2 1 Median 1.3247 1.1164 18.075 2 0 Median 1.1375 1.0944 NaN 1 0 Median 1.7841 1.4956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74892000 33096000 41796000 36898000 17279000 19618000 17846000 7614000 10232000 10168000 4526400 5641200 9980500 3676300 6304100 0 0 0 0 0 0 35652 1526 37461;37462 187838;187839;187840;187841;187842;187843;187844 190769;190770;190771;190772;190773;190774;190775 190772 494 7 VFNELLVLLPDTAK YYKSCRDLLGENFQKVFNELLVLLPDTAKQ KVFNELLVLLPDTAKQQELLSAHTDFCNRE K V F A K Q 1 0 1 1 0 0 1 0 0 0 4 1 0 1 1 0 1 0 0 2 0 0 14 0 1570.897 Q86UK7;H3BQQ2;H3BPG6 Q86UK7 810 823 ZNF598 Zinc finger protein 598 yes no 2 0.06353 34.532 By MS/MS 1 1.109 1.1523 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.109 1.1523 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 755780 358300 397480 0 0 0 0 0 0 755780 358300 397480 0 0 0 0 0 0 0 0 0 35653 3278 37463 187845 190776 190776 1 VFNETPINPR PFQHLEKSAVLQEARVFNETPINPRKCAHI LQEARVFNETPINPRKCAHILTKILYLINQ R V F P R K 0 1 2 0 0 0 1 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 10 0 1185.6142 Q9Y678 Q9Y678 33 42 COPG1 Coatomer subunit gamma-1 yes yes 2 0.00059424 105.14 By MS/MS By MS/MS 3 1 0.77754 0.75241 9.2352 4 Median 0.77075 0.74643 4.7681 3 2 Median 1.002 0.86578 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21096000 11475000 9621200 13802000 7792500 6009700 7294200 3682700 3611500 0 0 0 0 0 0 0 0 0 0 0 0 35654 4481 37464 187846;187847;187848;187849 190777;190778;190779;190780;190781 190781 5 VFNIYTDATPLR LVVLPTKELAQQVSKVFNIYTDATPLRVSL VSKVFNIYTDATPLRVSLVTGQKSLAKEQE K V F L R V 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 2 0 1 1 0 0 12 0 1408.7351 Q8N8A6 Q8N8A6 300 311 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.00017484 102.06 By MS/MS By MS/MS 1 1 1.1682 1.2171 58.88 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77306 0.8026 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.7654 1.8456 NaN 1 0 Median NaN NaN NaN 0 0 Median 10887000 4499400 6387300 0 0 0 0 0 0 5944500 3050800 2893800 0 0 0 4942100 1448600 3493500 0 0 0 35655 3394 37465 187850;187851 190782;190783 190782 2 VFNLYPR DENQFVAVTSTNAAKVFNLYPRKGRIAVGS VTSTNAAKVFNLYPRKGRIAVGSDADLVIW K V F P R K 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 907.49159 Q16555;A0A1C7CYX9 Q16555 391 397 DPYSL2 Dihydropyrimidinase-related protein 2 yes no 2 0.0030756 109.88 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1865 1.1051 26.869 4 Median 0.80608 0.76374 NaN 1 1 Median 1.4387 1.2478 NaN 1 0 Median 0.97847 0.97867 NaN 1 0 Median 1.603 1.3975 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30661000 15693000 14968000 14803000 8485500 6317900 3872300 1573100 2299200 11548000 5458400 6089900 437100 175920 261180 0 0 0 0 0 0 35656 328 37466 187852;187853;187854;187855 190784;190785 190784 2 VFNPYTEFK DLNQGIGEPQSPSRRVFNPYTEFKEFSRKQ QSPSRRVFNPYTEFKEFSRKQIKDMEKMFK R V F F K E 0 0 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 1 1 0 0 9 0 1143.5601 Q96C19 Q96C19 79 87 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.012973 60.436 By MS/MS 1 0.91442 0.83991 NaN 1 Median 0.91442 0.83991 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13621000 7143300 6477400 13621000 7143300 6477400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35657 3613 37467 187856 190786 190786 1 VFNPYTEFKEFSR DLNQGIGEPQSPSRRVFNPYTEFKEFSRKQ RRVFNPYTEFKEFSRKQIKDMEKMFKQYDA R V F S R K 0 1 1 0 0 0 2 0 0 0 0 1 0 3 1 1 1 0 1 1 0 0 13 1 1662.8042 Q96C19 Q96C19 79 91 EFHD2 EF-hand domain-containing protein D2 yes yes 3 0.0012796 42.209 By MS/MS 2 0.88804 0.90924 11.643 2 Median 0.88804 0.90924 11.643 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5720000 3031000 2689000 5720000 3031000 2689000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35658 3613 37468 187857;187858 190787 190787 1 VFNTTPDDLDLHVIYDVSHNIAK NRSSMTFLTRQAFAKVFNTTPDDLDLHVIY LDLHVIYDVSHNIAKVEQHVVDGKERTLLV K V F A K V 1 0 2 4 0 0 0 0 2 2 2 1 0 1 1 1 2 0 1 3 0 0 23 0 2625.3075 Q9Y3I0 Q9Y3I0 335 357 RTCB tRNA-splicing ligase RtcB homolog yes yes 3;4 1.1511E-11 53.779 By matching By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 4 1 1 1.0055 0.85474 21.288 11 Median 1.0076 0.96717 NaN 1 0 Median 0.92291 0.78355 12.299 2 0 Median 0.98917 1.0146 30.425 2 0 Median 1.014 0.86785 24.281 4 1 Median 1.0528 1.0036 NaN 1 0 Median 0.8212 0.68401 NaN 1 0 Median 258170000 126690000 131480000 2758100 1250000 1508200 16005000 7909700 8095200 40113000 20131000 19981000 194900000 95340000 99556000 3966200 1829900 2136300 432740 225870 206860 35659 4430 37469 187859;187860;187861;187862;187863;187864;187865;187866;187867;187868;187869 190788;190789;190790;190791;190792;190793;190794 190788 7 VFNVFCLYGNVEK LMVYGLDQSKMNCDRVFNVFCLYGNVEKVK DRVFNVFCLYGNVEKVKFMKSKPGAAMVEM R V F E K V 0 0 2 0 1 0 1 1 0 0 1 1 0 2 0 0 0 0 1 3 0 0 13 0 1587.7755 A0A3B3ITJ4;M0QXS5;M0R076;P14866;M0QYT0 P14866 399 411 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 2 0.00062741 69.01 By MS/MS By MS/MS 2 3 0.99868 1.0008 28.246 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2747 1.2743 48.823 2 1 Median NaN NaN NaN 0 0 Median 0.99868 1.0008 2.7709 3 0 Median NaN NaN NaN 0 0 Median 36261000 17782000 18479000 0 0 0 0 0 0 3142300 1632400 1509900 0 0 0 33119000 16150000 16969000 0 0 0 35660 2011;436;1419 37470 187870;187871;187872;187873;187874 190795;190796;190797;190798;190799;190800;190801 190798 7 VFNYNTLER RKNWVVTGADDMQIRVFNYNTLERVHMFEA DDMQIRVFNYNTLERVHMFEAHSDYIRCIA R V F E R V 0 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 9 0 1154.572 P35606;D6R997;D6RBZ7;D6RCL6;D6RBG7;D6RBT6 P35606 83 91 COPB2 Coatomer subunit beta yes no 2 2.5204E-06 128.69 By MS/MS By MS/MS 2 2 1.7255 1.6794 28.861 3 Plateau 1.7255 1.6794 NaN 1 0 Median 1.3117 1.1096 22.822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31668000 13455000 18213000 19220000 7524400 11695000 12448000 5930600 6517500 0 0 0 0 0 0 0 0 0 0 0 0 35661 2246 37471 187875;187876;187877;187878 190802;190803;190804;190805 190803 4 VFPGSTTEDYNLIVIER LDLDLTADSQPPVFKVFPGSTTEDYNLIVI PGSTTEDYNLIVIERGAAAAATGQPGTAPA K V F E R G 0 1 1 1 0 0 2 1 0 2 1 0 0 1 1 1 2 0 1 2 0 0 17 0 1951.9891 Q13263;M0R0K9 Q13263 508 524 TRIM28 Transcription intermediary factor 1-beta yes no 2 7.8864E-15 120.14 By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 2 0.78364 0.79224 7.8345 8 Median 0.75272 0.73617 6.4484 2 0 Median 0.86768 0.75756 14.441 2 0 Median 0.76473 0.81375 NaN 1 0 Median 0.9186 0.77129 NaN 1 0 Median 0.7623 0.82977 0.57134 2 1 Median NaN NaN NaN 0 0 Median 23796000 13938000 9858300 7681200 4435800 3245300 2397800 1438500 959250 7251200 4487400 2763800 275150 125770 149380 6190700 3450100 2740600 0 0 0 35662 2802 37472 187879;187880;187881;187882;187883;187884;187885;187886 190806;190807;190808;190809;190810;190811;190812;190813;190814;190815;190816;190817;190818;190819 190809 14 VFPSHFTQQR VVCRHVLDTLIQLAKVFPSHFTQQRTKETN IQLAKVFPSHFTQQRTKETNCESDRERGNK K V F Q R T 0 1 0 0 0 2 0 0 1 0 0 0 0 2 1 1 1 0 0 1 0 0 10 0 1245.6255 Q7Z6Z7;H0Y659 Q7Z6Z7 3346 3355 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2;3 0.00010893 97.431 By MS/MS By MS/MS By MS/MS 3 2 1 1.2566 1.1428 5.7303 6 Median 1.1152 1.0994 4.8571 3 1 Median 1.4354 1.1813 0.73341 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4032 1.1688 NaN 1 0 Median 52004000 23473000 28531000 21505000 10351000 11153000 28702000 12279000 16424000 0 0 0 0 0 0 0 0 0 1796800 843070 953730 35663 3253 37473 187887;187888;187889;187890;187891;187892 190820;190821;190822;190823;190824;190825;190826;190827;190828 190825 9 VFPTGPSDWR GFDLDGTLITTRSGKVFPTGPSDWRILYPE TRSGKVFPTGPSDWRILYPEIPRKLRELEA K V F W R I 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 1 1 1 0 1 0 0 10 0 1160.5615 M0QYH2;Q96T60;M0R3C8;A0A0D9SFL2;M0QYI1 M0QYH2 184 193 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes no 2 0.0031972 57.59 By MS/MS 1 0.54819 0.55571 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54819 0.55571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8000000 4880900 3119100 0 0 0 0 0 0 8000000 4880900 3119100 0 0 0 0 0 0 0 0 0 35664 1418 37474 187893 190829;190830;190831;190832 190831 4 VFQASPEDHEK DWIRHKFTRSRIPEKVFQASPEDHEKYGGD IPEKVFQASPEDHEKYGGDPQNPHKLHIVT K V F E K Y 1 0 0 1 0 1 2 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 11 0 1285.5939 Q8TCC3;B8ZZV5 Q8TCC3 45 55 MRPL30 39S ribosomal protein L30, mitochondrial yes no 3 0.024194 23.226 By matching By MS/MS By matching By matching 1 1 2 1 0.90893 0.91759 22.91 5 Median 0.88271 0.83172 NaN 1 0 Median 1.4019 1.2217 NaN 1 0 Median 0.81209 0.77597 23.707 2 0 Median 1.2372 0.99655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2446200 1060600 1385600 811960 394750 417210 849070 265820 583240 650390 336900 313480 134770 63142 71631 0 0 0 0 0 0 35665 3465 37475 187894;187895;187896;187897;187898 190833 190833 1 VFQEFLK V F L K 0 0 0 0 0 1 1 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 7 0 909.496 REV__A0A0C4DG94 yes no 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS 4 2 2 1.0382 1.0237 14.472 8 Median 1.0261 0.95564 1.4467 4 0 Linear 1.5654 1.3101 0 2 0 Median 1.0505 1.0967 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 114230000 51661000 62573000 75646000 36060000 39587000 26630000 9938400 16692000 11958000 5663400 6294700 0 0 0 0 0 0 0 0 0 + 35666 4509 37476 187899;187900;187901;187902;187903;187904;187905;187906 190834;190835;190836;190837;190838 190838 5 VFQFLNAK IYPGHGRRYARTDGKVFQFLNAKCESAFLS YARTDGKVFQFLNAKCESAFLSKRNPRQIN K V F A K C 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 965.53345 C9JXB8;C9JNW5;P83731 C9JXB8 28 35 RPL24 60S ribosomal protein L24 yes no 2 0.0028554 104.11 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 5 1 2 2 3 1.2631 1.0828 22.614 14 Median 1.1658 1.101 5.9501 2 0 Median 1.0625 0.90003 31.579 4 1 Median 1.1207 1.051 NaN 1 0 Median 1.3154 1.0345 11.019 2 0 Median 1.2597 1.299 4.1805 2 0 Median 1.3659 1.1253 11.389 3 0 Median 339390000 154610000 184790000 202050000 93455000 108590000 23180000 10653000 12527000 29980000 13749000 16231000 3501500 1505100 1996400 54531000 24014000 30517000 26155000 11230000 14926000 35667 713 37477 187907;187908;187909;187910;187911;187912;187913;187914;187915;187916;187917;187918;187919;187920;187921 190839;190840;190841;190842;190843;190844;190845;190846;190847;190848 190840 10 VFQGFFTGR SKQNLVPFRDSKLTRVFQGFFTGRGRSCMI DSKLTRVFQGFFTGRGRSCMIVNVNPCAST R V F G R G 0 1 0 0 0 1 0 2 0 0 0 0 0 3 0 0 1 0 0 1 0 0 9 0 1057.5345 O95235 O95235 467 475 KIF20A Kinesin-like protein KIF20A yes yes 2 0.025749 59.245 By MS/MS 2 1.2312 1.3195 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2312 1.3195 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2597400 1191600 1405900 0 0 0 0 0 0 2597400 1191600 1405900 0 0 0 0 0 0 0 0 0 35668 1756 37478 187922;187923 190849;190850 190850 2 VFQGTDEQLNDLYHNHQR QMEKDNSELEEKMEKVFQGTDEQLNDLYHN GTDEQLNDLYHNHQRTVREKERKLVDCHRE K V F Q R T 0 1 2 2 0 3 1 1 2 0 2 0 0 1 0 0 1 0 1 1 0 0 18 0 2213.025 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 296 313 RAD50 DNA repair protein RAD50 yes no 2;3;4 1.0944E-19 159.31 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 3 1.1742 1.1226 22.794 14 Median 1.1875 1.1142 9.8571 3 2 Plateau NaN NaN NaN 0 0 Median 1.0196 1.1199 10.217 5 1 Median 1.2749 1.1253 11.114 3 0 Median 1.4684 1.5247 22.395 3 0 Median NaN NaN NaN 0 0 Median 435510000 204900000 230610000 86040000 39751000 46289000 0 0 0 316710000 153490000 163220000 18419000 7514400 10905000 14336000 4146300 10189000 0 0 0 35669 3561 37479 187924;187925;187926;187927;187928;187929;187930;187931;187932;187933;187934;187935;187936;187937 190851;190852;190853;190854;190855;190856;190857;190858;190859;190860;190861;190862;190863;190864;190865 190860 15 VFQKEEIEPLQGK GMETETINQQLNMFKVFQKEEIEPLQGKQQ FKVFQKEEIEPLQGKQQDVNWLGQGLIQSA K V F G K Q 0 0 0 0 0 2 3 1 0 1 1 2 0 1 1 0 0 0 0 1 0 0 13 1 1543.8246 E9PHM6;F6QMI7;Q03001;F8W9J4 E9PHM6 3240 3252 DST Dystonin yes no 3 0.00019257 69.602 By MS/MS By MS/MS By matching 1 1 1 1.1936 1.3542 45.108 3 Median NaN NaN NaN 0 0 Median 0.66266 0.63252 NaN 1 0 Median 1.1936 1.3542 NaN 1 0 Median 1.3855 1.4076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19194000 9106300 10087000 0 0 0 10342000 4804500 5537500 7823900 3831100 3992800 1027800 470660 557110 0 0 0 0 0 0 35670 934 37480 187938;187939;187940 190866;190867;190868 190867 3 VFQNEVLGTLQR EPDSRGGSPQMDDIKVFQNEVLGTLQRGKE DIKVFQNEVLGTLQRGKEENISCDNLVLEI K V F Q R G 0 1 1 0 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1402.7569 A0A3B3IUB1;Q13144;A0A3B3ITG6 A0A3B3IUB1 560 571 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes no 2 3.958E-06 118.4 By MS/MS By matching By MS/MS 1 1 1 1.1927 1.0346 2.374 3 Median 1.0801 1.0219 NaN 1 0 Median 1.1927 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2415 1.0699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18119000 7619100 10500000 11490000 5135900 6353900 2551500 1187100 1364500 0 0 0 4077300 1296100 2781200 0 0 0 0 0 0 35671 443 37481 187941;187942;187943 190869;190870;190871 190869 3 VFQSLPHENKPLTLSNYQTNK FIKVHVGDEDFVHLRVFQSLPHENKPLTLS HENKPLTLSNYQTNKAKHDELTYF______ R V F N K A 0 0 3 0 0 2 1 0 1 0 3 2 0 1 2 2 2 0 1 1 0 0 21 1 2457.2652 P04080;A0A1W2PQG6 P04080 69 89 CSTB Cystatin-B yes no 2;3;4 8.9274E-29 165.45 By MS/MS By MS/MS By MS/MS 2 3 2 0.8716 0.7556 7.427 7 Median 0.80039 0.74954 0.3097 2 0 Median 0.8716 0.7556 1.9574 3 0 Median 0.87328 0.87795 0.12987 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 685610000 362080000 323530000 236400000 131060000 105340000 387720000 199520000 188200000 61482000 31495000 29987000 0 0 0 0 0 0 0 0 0 35672 1843 37482 187944;187945;187946;187947;187948;187949;187950 190872;190873;190874;190875;190876;190877;190878;190879;190880;190881;190882;190883;190884;190885;190886;190887;190888;190889;190890;190891;190892;190893;190894 190887 23 VFQSSTSQEQVYNDCAK EDTVVIASKPYAFDRVFQSSTSQEQVYNDC QSSTSQEQVYNDCAKKIVKDVLEGYNGTIF R V F A K K 1 0 1 1 1 3 1 0 0 0 0 1 0 1 0 3 1 0 1 2 0 0 17 0 1989.8738 P33176 P33176 51 67 KIF5B Kinesin-1 heavy chain yes yes 2 1.5296E-07 95.417 By MS/MS 1 1.2122 1.0487 NaN 1 Median NaN NaN NaN 0 0 Median 1.2122 1.0487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3444500 1527600 1917000 0 0 0 3444500 1527600 1917000 0 0 0 0 0 0 0 0 0 0 0 0 35673 2221 37483 187951 190895;190896 190896 2 VFQTEAELQEVISDLQSK QLTDENQSCCPVCQRVFQTEAELQEVISDL TEAELQEVISDLQSKLRLAPDKLKSTESEL R V F S K L 1 0 0 1 0 3 3 0 0 1 2 1 0 1 0 2 1 0 0 2 0 0 18 0 2063.0423 Q92878;A0A1W2PQ90;A0A494C1B7;E7EN38 Q92878 687 704 RAD50 DNA repair protein RAD50 yes no 2;3 0.00089797 37.426 By MS/MS By MS/MS By matching 1 2 1 1.0502 1.0779 12.693 4 Median 1.0656 1.0015 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99812 1.0779 4.7326 2 0 Median NaN NaN NaN 0 0 Median 1.2991 1.3344 NaN 1 0 Median NaN NaN NaN 0 0 Median 13897000 6526800 7369700 1458900 632630 826300 0 0 0 11774000 5577100 6197200 0 0 0 663340 317120 346220 0 0 0 35674 3561 37484 187952;187953;187954;187955 190897;190898;190899;190900 190900 4 VFQVEYAMK TGYDLSASTFSPDGRVFQVEYAMKAVENSS FSPDGRVFQVEYAMKAVENSSTAIGIRCKD R V F M K A 1 0 0 0 0 1 1 0 0 0 0 1 1 1 0 0 0 0 1 2 0 0 9 0 1113.5529 P25788;G3V3W4;G3V5N4 P25788 21 29 PSMA3 Proteasome subunit alpha type-3 yes no 2 0.00066073 106.36 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.1776 1.0819 7.0203 7 Median 1.172 1.0819 3.0366 3 1 Median 1.2526 1.047 2.5643 2 0 Median 1.2933 1.2122 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1461 1.2114 NaN 1 0 Median NaN NaN NaN 0 0 Median 291670000 136050000 155630000 239710000 113050000 126650000 37914000 17033000 20881000 13910000 5889300 8020600 0 0 0 144430 73369 71061 0 0 0 35675 2137 37485;37486 187956;187957;187958;187959;187960;187961;187962 190901;190902;190903;190904;190905;190906;190907;190908;190909;190910;190911;190912 190908 897 12 VFSATLGLVDIVK SGLEHSAHVLEKGGKVFSATLGLVDIVKGT GKVFSATLGLVDIVKGTNSYYKLQLLEDDK K V F V K G 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 1 0 0 3 0 0 13 0 1360.7966 P09874 P09874 552 564 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 8.938E-07 127.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 2 2 3 1.2863 1.1597 20.721 18 Median 1.3158 1.3339 8.6578 3 0 Median 1.5743 1.3771 17.446 3 0 Median 1.0903 1.1596 8.4698 5 0 Median 1.9279 1.6906 54.332 2 0 Median 1.1972 1.1833 14.044 2 0 Median 1.3849 1.1463 2.8592 3 0 Median 255110000 109380000 145730000 4834100 2197600 2636500 10720000 4325700 6394000 70861000 33079000 37782000 113990000 45727000 68260000 14127000 5808100 8319100 40581000 18244000 22337000 35676 1922 37487 187963;187964;187965;187966;187967;187968;187969;187970;187971;187972;187973;187974;187975;187976;187977;187978;187979;187980 190913;190914;190915;190916;190917;190918;190919;190920;190921;190922;190923;190924;190925;190926;190927;190928;190929;190930;190931;190932;190933;190934;190935;190936 190931 24 VFSAYIK NNVLLAAGSCDFKCRVFSAYIKEVDEKPAS GSCDFKCRVFSAYIKEVDEKPASTPWGSKM R V F I K E 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 7 0 826.45889 A0A1W2PNV4;E9PF58;Q92747 Q92747 168 174 ARPC1A Actin-related protein 2/3 complex subunit 1A no no 2 0.040795 44.692 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3966 1.2558 6.0275 4 Median 1.4348 1.3387 NaN 1 0 Median 1.3594 1.1641 NaN 1 0 Median 1.2278 1.2855 NaN 1 0 Median 1.453 1.2267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17404000 7557100 9847300 4251900 1860400 2391500 4825100 2052000 2773000 6779400 2947000 3832300 1548000 697560 850450 0 0 0 0 0 0 35677 334;3552 37488 187981;187982;187983;187984 190937;190938;190939;190940 190937 4 VFSDEVQQQAQLSTIR VHPNYHKEPFLQQLKVFSDEVQQQAQLSTI FSDEVQQQAQLSTIRSFLKLYTTMPVAKLA K V F I R S 1 1 0 1 0 4 1 0 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1847.9377 B0QY89;Q9Y262;B0QY90 B0QY89 489 504 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2;3 1.0917E-59 238.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 4 3 2 1 1 1.1215 1.0492 31.718 18 Median 1.0702 1.0382 20.495 7 0 Median 1.1123 0.95699 52.207 4 0 Median 1.1225 1.1421 10.823 3 0 Median 1.1129 0.93089 17.423 2 0 Median 1.395 1.4048 NaN 1 0 Median 1.5051 1.3198 NaN 1 0 Median 174410000 82120000 92291000 129520000 61605000 67916000 10874000 4910100 5964000 26682000 12557000 14125000 3844800 1768900 2075900 3151000 1150200 2000700 337160 128350 208820 35678 554 37489 187985;187986;187987;187988;187989;187990;187991;187992;187993;187994;187995;187996;187997;187998;187999;188000;188001;188002 190941;190942;190943;190944;190945;190946;190947;190948;190949;190950;190951;190952;190953;190954;190955;190956;190957;190958;190959 190942 19 VFSGLVSTGLK MVPTSDKGRFYAFGRVFSGLVSTGLKVRIM AFGRVFSGLVSTGLKVRIMGPNYTPGKKED R V F L K V 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 2 1 0 0 2 0 0 11 0 1106.6336 P13639 P13639 416 426 EEF2 Elongation factor 2 yes yes 2 0.00013586 118.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 6 7 6 2 6 1.104 0.96642 33.053 34 Median 1.1616 1.0751 13.475 8 0 Median 0.95164 0.79759 18.59 6 0 Median 1.2645 1.3025 17.575 6 1 Median 1.4007 0.87201 21.766 6 0 Linear 1.8678 1.9349 1.255 2 0 Median 1.436 1.1828 32.098 6 0 Median 1206900000 556350000 650540000 569950000 253130000 316820000 445050000 219590000 225460000 121690000 53423000 68267000 34987000 16765000 18222000 16671000 5922600 10748000 18544000 7517700 11026000 35679 1992 37490 188003;188004;188005;188006;188007;188008;188009;188010;188011;188012;188013;188014;188015;188016;188017;188018;188019;188020;188021;188022;188023;188024;188025;188026;188027;188028;188029;188030;188031;188032;188033;188034;188035;188036;188037 190960;190961;190962;190963;190964;190965;190966;190967;190968;190969;190970;190971;190972;190973;190974;190975;190976;190977;190978;190979;190980;190981;190982;190983;190984;190985;190986;190987;190988;190989;190990;190991;190992 190973 33 VFSIGPVFR PQLYKQMCICADFEKVFSIGPVFRAEDSNT CADFEKVFSIGPVFRAEDSNTHRHLTEFVG K V F F R A 0 1 0 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 0 2 0 0 9 0 1020.5757 P14868 P14868 265 273 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 0.00094593 89.142 By MS/MS By matching By matching By matching By matching 4 2 1 1 1 0.94201 0.96488 60.923 9 Median 1.0278 1.0279 3.8854 4 0 Median 1.2224 1.0681 35.726 2 0 Median 0.16156 0.16952 NaN 1 0 Median 0.8053 0.66743 NaN 1 0 Median 0.81704 0.78853 NaN 1 0 Median NaN NaN NaN 0 0 Median 24306000 12330000 11976000 18506000 8773000 9733300 2618200 898840 1719300 2836000 2454800 381220 63061 24422 38638 282660 178930 103730 0 0 0 35680 2012 37491 188038;188039;188040;188041;188042;188043;188044;188045;188046 190993;190994;190995;190996 190994 4 VFSLMDPNSPER AEVEVADELLENLAKVFSLMDPNSPERVTF LAKVFSLMDPNSPERVTFVSRALKWSSGGS K V F E R V 0 1 1 1 0 0 1 0 0 0 1 0 1 1 2 2 0 0 0 1 0 0 12 0 1390.6551 Q7L5D6;C9JPA8;C9JY46;C9JHN8 Q7L5D6 111 122 GET4 Golgi to ER traffic protein 4 homolog yes no 2 0.00019561 85.731 By MS/MS By matching By matching 1 1 1 0.82097 0.69672 5.4764 3 Median 0.81976 0.76506 NaN 1 0 Median 0.82097 0.69496 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82976 0.69672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9186200 4964400 4221800 7341900 3929900 3412000 1363400 784420 578980 0 0 0 480850 250020 230830 0 0 0 0 0 0 35681 3225 37492 188047;188048;188049 190997;190998 190997 2 VFSLSSEFK NQLLKPTLSEIELFRVFSLSSEFKNITVRE EIELFRVFSLSSEFKNITVREEEKLELQKL R V F F K N 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 3 0 0 0 1 0 0 9 0 1042.5335 O75643;A0A494C1A5 O75643 1017 1025 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0005086 103.83 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 2 1 3 3 2 2 1.1863 1.1525 10.808 13 Median 1.3602 1.3391 8.3839 2 2 Median 1.4215 1.2608 NaN 1 0 Median 1.0109 1.111 5.8139 3 0 Plateau 1.3003 1.1753 12.29 3 0 Median 1.0824 1.1235 3.6001 2 0 Median 1.2667 1.0875 9.6314 2 0 Median 96149000 45443000 50706000 20372000 7889800 12482000 4740100 2027300 2712800 49609000 25517000 24092000 3391600 1451300 1940300 16387000 7761400 8625100 1649500 795760 853730 35682 1688 37493 188050;188051;188052;188053;188054;188055;188056;188057;188058;188059;188060;188061;188062 190999;191000;191001;191002;191003;191004;191005;191006;191007;191008 190999 10 VFSSAEALVQSFR REREDYSPLIRVIGRVFSSAEALVQSFRKV GRVFSSAEALVQSFRKVKQHTKEELKSLQA R V F F R K 2 1 0 0 0 1 1 0 0 0 1 0 0 2 0 3 0 0 0 2 0 0 13 0 1439.7409 A0A0D9SG77;A0A1B0GVL3;Q05086;A0A0D9SF91 A0A0D9SG77 133 145 UBE3A Ubiquitin-protein ligase E3A yes no 2 0.026507 27.481 By MS/MS By matching 1 1 0.60094 0.60225 43.861 2 Median 0.81829 0.82124 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44132 0.44166 NaN 1 0 Median 1942200 1049700 892570 1276100 582620 693490 0 0 0 0 0 0 0 0 0 0 0 0 666140 467060 199080 35683 272 37494 188063;188064 191009 191009 1 VFSSTLQNWQTTR LAQVSPELLLASVRRVFSSTLQNWQTTRFM RRVFSSTLQNWQTTRFMEVEVAIRLLYMLA R V F T R F 0 1 1 0 0 2 0 0 0 0 1 0 0 1 0 2 3 1 0 1 0 0 13 0 1566.7791 O43592;F5GZM3 O43592 430 442 XPOT Exportin-T yes no 2 4.8234E-07 107.83 By MS/MS By matching 2 2 1.4003 1.2432 15.751 4 Median 1.3261 1.269 27.107 2 0 Median 1.4003 1.2432 2.299 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27751000 10673000 17078000 25696000 9798200 15898000 2054500 874590 1179900 0 0 0 0 0 0 0 0 0 0 0 0 35684 1576 37495 188065;188066;188067;188068 191010 191010 1 VFSWGFGGYGR ACGANHTLVLDSQKRVFSWGFGGYGRLGHA SQKRVFSWGFGGYGRLGHAEQKDEMVPRLV R V F G R L 0 1 0 0 0 0 0 4 0 0 0 0 0 2 0 1 0 1 1 1 0 0 11 0 1231.5774 Q9P258 Q9P258 351 361 RCC2 Protein RCC2 yes yes 2 0.00015521 99.442 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 5 1 8 5 2 1 1.1253 1.0859 15.341 22 Median 1.0329 1.0209 10.227 5 0 Median 1.321 1.1369 NaN 1 0 Median 1.1314 1.1308 11.71 8 0 Median 1.2646 1.0814 22.148 5 0 Median 0.93317 0.96231 14.638 2 0 Median 1.1369 0.97887 NaN 1 0 Median 158990000 72847000 86141000 22913000 11387000 11527000 2297800 903330 1394500 103880000 47316000 56567000 24728000 10661000 14067000 4507000 2266700 2240300 658900 313350 345550 35685 4214 37496 188069;188070;188071;188072;188073;188074;188075;188076;188077;188078;188079;188080;188081;188082;188083;188084;188085;188086;188087;188088;188089;188090 191011;191012;191013;191014;191015;191016;191017;191018;191019;191020;191021;191022;191023;191024;191025;191026;191027;191028;191029;191030;191031 191014 21 VFSWLATLHGSNMK FTSATMIIAIPTGVKVFSWLATLHGSNMKW KVFSWLATLHGSNMKWSAAVLWALGFIFLF K V F M K W 1 0 1 0 0 0 0 1 1 0 2 1 1 1 0 2 1 1 0 1 0 0 14 0 1589.8024 P00395 P00395 320 333 MT-CO1 Cytochrome c oxidase subunit 1 yes yes 3 0.0012405 37.954 By MS/MS 1 0.84449 0.84054 NaN 1 Median 0.84449 0.84054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5538700 2872500 2666200 5538700 2872500 2666200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35686 1818 37497 188091 191032;191033 191033 2 VFSWLQQEGHLSEEEMAR KLGVDLDAQTWRIPRVFSWLQQEGHLSEEE WLQQEGHLSEEEMARTFNCGVGAVLVVSKE R V F A R T 1 1 0 0 0 2 4 1 1 0 2 0 1 1 0 2 0 1 0 1 0 0 18 0 2175.0055 P22102 P22102 712 729 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 3 2.5755E-08 90.714 By MS/MS By matching By matching 1 1 1 1.1419 1.053 5.103 3 Median 1.1419 1.1006 NaN 1 0 Median 1.1519 0.99409 NaN 1 0 Median 0.9868 1.053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12201000 5421000 6779700 9597400 4322700 5274700 1543700 655070 888630 1059700 443280 616390 0 0 0 0 0 0 0 0 0 35687 2098 37498 188092;188093;188094 191034 191034 1 VFTAGSEER LHLAEIEDMPLFEPRVFTAGSEERVTCLPP PLFEPRVFTAGSEERVTCLPPKGLPEPSVW R V F E R V 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 9 0 994.47197 Q13308;Q86X91;H7C5L0 Q13308 332 340 PTK7 Inactive tyrosine-protein kinase 7 yes no 2 0.0075799 51.066 By MS/MS 1 1.2507 1.0714 NaN 1 Median NaN NaN NaN 0 0 Median 1.2507 1.0714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2090500 964000 1126500 0 0 0 2090500 964000 1126500 0 0 0 0 0 0 0 0 0 0 0 0 35688 2804 37499 188095 191035 191035 1 VFTEANLVSVGSK SAANKTIIYLDREKRVFTEANLVSVGSKKL KRVFTEANLVSVGSKKLRESVLRMSFEFHQ R V F S K K 1 0 1 0 0 0 1 1 0 0 1 1 0 1 0 2 1 0 0 3 0 0 13 0 1349.7191 Q9NU22 Q9NU22 2644 2656 MDN1 Midasin yes yes 2 7.4802E-07 123.79 By MS/MS By MS/MS 1 1 1.3283 1.339 19.588 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0944 1.1658 NaN 1 0 Median 1.6123 1.5379 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37685000 18314000 19371000 0 0 0 0 0 0 36272000 17767000 18505000 1413200 547090 866080 0 0 0 0 0 0 35689 4112 37500 188096;188097 191036;191037;191038 191037 3 VFTGVVTK TPRSSQQQTQPQKQRVFTGVVTKLHDTFGF TQPQKQRVFTGVVTKLHDTFGFVDEDVFFQ R V F T K L 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 3 0 0 8 0 849.496 Q8IX12;A0A0C4DGG8;F5H2E6;F5H3E1;F5H7M9 Q8IX12 149 156 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0033829 98.523 By MS/MS By matching 2 1 0.94623 0.92994 4.9582 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92416 0.96932 5.8652 2 0 Median 1.0815 0.92476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16876000 8607100 8269200 0 0 0 0 0 0 14201000 7370600 6830600 2675200 1236500 1438600 0 0 0 0 0 0 35690 3331 37501 188098;188099;188100 191039 191039 1 VFTKPVDPDEVPDYVTVIK LRNVTHRLAIDKRFRVFTKPVDPDEVPDYV PVDPDEVPDYVTVIKQPMDLSSVISKIDLH R V F I K Q 0 0 0 3 0 0 1 0 0 1 0 2 0 1 3 0 2 0 1 5 0 0 19 1 2160.1354 Q6PL18;A0A0B4J211 Q6PL18 1008 1026 ATAD2 ATPase family AAA domain-containing protein 2 yes no 3 0.068084 8.4704 By MS/MS 3 0.42063 0.4711 1.1032 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42063 0.4711 1.1032 3 0 Plateau NaN NaN NaN 0 0 Median 8919200 5988400 2930800 0 0 0 0 0 0 0 0 0 0 0 0 8919200 5988400 2930800 0 0 0 35691 3177 37502 188101;188102;188103 191040 191040 1 VFTQLGSVLK ELGPGRGTLVGDILRVFTQLGSVLKNCDIS GDILRVFTQLGSVLKNCDISVHLVEVSQKL R V F L K N 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 1 1 0 0 2 0 0 10 0 1090.6386 C9JS27;Q7L592;C9J236;C9JP36;C9JEL7 C9JS27 95 104 NDUFAF7 NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 yes no 2 0.00095511 69.825 By MS/MS By matching By MS/MS By matching 1 2 2 2 1.3407 1.1551 38.859 7 Median 0.4625 0.43204 NaN 1 0 Median 1.4038 1.2207 7.8029 2 0 Median 0.99268 1.014 2.1643 2 0 Median 1.4822 1.271 2.8766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21127000 10016000 11111000 6051600 3415800 2635800 3554700 1185100 2369600 10373000 4921000 5452000 1148000 494340 653680 0 0 0 0 0 0 35692 721 37503 188104;188105;188106;188107;188108;188109;188110 191041;191042;191043 191043 3 VFTSAAFHELGLHPHLISTINTVLK IPELHRPVVKQVQEKVFTSAAFHELGLHPH GLHPHLISTINTVLKMSSMTSVQKQSIPVL K V F L K M 2 0 1 0 0 0 1 1 3 2 4 1 0 2 1 2 3 0 0 2 0 0 25 0 2744.5014 F8WAJ0;Q9H8H2 F8WAJ0 121 145 DDX31 Probable ATP-dependent RNA helicase DDX31 yes no 4 0.060818 6.5042 By MS/MS 1 1.1278 0.98606 NaN 1 Median NaN NaN NaN 0 0 Median 1.1278 0.98606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5123500 2182900 2940600 0 0 0 5123500 2182900 2940600 0 0 0 0 0 0 0 0 0 0 0 0 35693 1092 37504 188111 191044 191044 1 VFTSSTISGGYAEYALAADHTVYK EAVGDNASAFKKGDRVFTSSTISGGYAEYA GYAEYALAADHTVYKLPEKLDFKQGAAIGI R V F Y K L 4 0 0 1 0 0 1 2 1 1 1 1 0 1 0 3 3 0 3 2 0 0 24 0 2550.2278 Q08257;A6NP24;C9JH92 Q08257 93 116 CRYZ Quinone oxidoreductase yes no 3 0.030159 12.314 By MS/MS 1 0.79207 0.76076 NaN 1 Median 0.79207 0.76076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4609300 2618900 1990400 4609300 2618900 1990400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35694 2737 37505 188112 191045 191045 1 VFTTGFSR EGARPMRAIFLADGKVFTTGFSRMSERQLA IFLADGKVFTTGFSRMSERQLALWDPENLE K V F S R M 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 8 0 913.46577 Q9BR76;A0A087WW53;F5H390 Q9BR76 234 241 CORO1B Coronin-1B;Coronin yes no 2 0.002116 92.47 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.3564 1.2779 14.204 5 Median 1.3501 1.3327 23.342 2 1 Median 1.4701 1.2779 NaN 1 0 Median 1.3564 1.366 NaN 1 1 Median 1.3008 1.1162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23901000 10700000 13201000 10695000 4997900 5697300 929810 246940 682860 9581900 4306700 5275200 2694100 1148100 1546000 0 0 0 0 0 0 35695 3792 37506 188113;188114;188115;188116;188117;188118 191046;191047;191048;191049;191050 191046 5 VFTTQELVQAFTHAPATLEADR TLKETFLTSPEELYRVFTTQELVQAFTHAP VQAFTHAPATLEADRGGKFHMVDGNVSGEF R V F D R G 4 1 0 1 0 2 2 0 1 0 2 0 0 2 1 0 4 0 0 2 0 0 22 0 2444.2336 O95433;G3V438;H0YJG7;H0YJ63 O95433 225 246 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 3 6.9407E-07 41.521 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.88444 0.82256 23.916 4 Median 0.9167 0.90912 NaN 1 0 Median 0.85332 0.74424 NaN 1 0 Median 1.1087 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66748 0.71698 NaN 1 0 Median NaN NaN NaN 0 0 Median 29934000 14990000 14944000 5141500 2531100 2610500 12830000 6816900 6012600 10996000 5055300 5940600 0 0 0 966860 587030 379840 0 0 0 35696 1773 37507 188119;188120;188121;188122 191051;191052;191053;191054;191055 191053 5 VFTTVGSAEK VGQAAIAIALSLGCRVFTTVGSAEKRAYLQ SLGCRVFTTVGSAEKRAYLQARFPQLDSTS R V F E K R 1 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 2 0 0 2 0 0 10 0 1037.5393 P49327;A0A0U1RQF0 P49327 1695 1704 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00056965 115.71 By MS/MS By MS/MS 1 1 1.5748 1.4577 16.643 2 Median 1.3389 1.2959 NaN 1 0 Median 1.8523 1.6398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36225000 13838000 22387000 9121100 3754400 5366700 27104000 10083000 17020000 0 0 0 0 0 0 0 0 0 0 0 0 35697 2377 37508 188123;188124 191056;191057;191058;191059 191058 4 VFTTVGSAEKR VGQAAIAIALSLGCRVFTTVGSAEKRAYLQ LGCRVFTTVGSAEKRAYLQARFPQLDSTSF R V F K R A 1 1 0 0 0 0 1 1 0 0 0 1 0 1 0 1 2 0 0 2 0 0 11 1 1193.6404 P49327;A0A0U1RQF0 P49327 1695 1705 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 3 0.037374 30.205 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 723240 0 723240 0 0 0 723240 0 723240 0 0 0 0 0 0 0 0 0 0 0 0 35698 2377 37509 188125 191060 191060 1 VFVESVLR FSEAFIAWIHVKALRVFVESVLRYGLPVNF IHVKALRVFVESVLRYGLPVNFQAMLLQPN R V F L R Y 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 3 0 0 8 0 947.54402 P21283;E7EV59;A0A0U1RR16;Q8NEY4 P21283 302 309 ATP6V1C1;ATP6V1C2 V-type proton ATPase subunit C 1;V-type proton ATPase subunit C 2 yes no 2 0.004801 79.469 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2022 1.0956 13.574 4 Median 1.0086 1.0056 NaN 1 0 Median 1.1707 1.0199 NaN 1 0 Median 1.2345 1.3418 NaN 1 0 Median 1.3291 1.1769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27312000 12633000 14679000 12246000 6189500 6056100 6252500 2936400 3316200 7947700 3217200 4730500 866540 290000 576530 0 0 0 0 0 0 35699 2087 37510 188126;188127;188128;188129 191061;191062;191063 191061 3 VFVGGDDFK NTLVPGALELAWQHRVFVGGDDFKSGQTKV LAWQHRVFVGGDDFKSGQTKVKSVLVDFLI R V F F K S 0 0 0 2 0 0 0 2 0 0 0 1 0 2 0 0 0 0 0 2 0 0 9 0 982.476 Q9NPH2 Q9NPH2 297 305 ISYNA1 Inositol-3-phosphate synthase 1 yes yes 2 0.001584 79.906 By MS/MS By MS/MS 1 1 0.79968 0.70643 47.597 2 Median 0.5441 0.50455 NaN 1 0 Median 1.1753 0.98908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56434000 35416000 21018000 48886000 32104000 16782000 7548300 3312200 4236100 0 0 0 0 0 0 0 0 0 0 0 0 35700 4052 37511 188130;188131 191064;191065;191066 191065 3 VFVGGLSPDTSEEQIK PKRAKALKGKEPPKKVFVGGLSPDTSEEQI FVGGLSPDTSEEQIKEYFGAFGEIENIELP K V F I K E 0 0 0 1 0 1 2 2 0 1 1 1 0 1 1 2 1 0 0 2 0 0 16 0 1704.857 A0A087WUK2;O14979 A0A087WUK2 235 250 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 1.3388E-06 90.926 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 4 2 0.95905 0.89119 16.116 15 Median 0.75113 0.72347 NaN 1 0 Median 1.1027 0.93706 7.0977 2 0 Median 0.87536 0.84565 10.032 3 0 Median 1.1285 0.9587 19.323 3 0 Plateau 0.94814 0.96269 26.354 4 1 Median 1.0423 0.86673 5.0013 2 0 Median 200890000 101200000 99692000 2424600 1489900 934730 2365700 1173000 1192700 112760000 57555000 55204000 8101200 3759900 4341300 66629000 33217000 33412000 8610800 4003300 4607500 35701 32 37512 188132;188133;188134;188135;188136;188137;188138;188139;188140;188141;188142;188143;188144;188145;188146 191067;191068;191069;191070;191071;191072;191073;191074;191075;191076;191077;191078;191079;191080;191081 191070 15 VFVHYTGWLLDGTK KREGTGTEMPMIGDRVFVHYTGWLLDGTKF RVFVHYTGWLLDGTKFDSSLDRKDKFSFDL R V F T K F 0 0 0 1 0 0 0 2 1 0 2 1 0 1 0 0 2 1 1 2 0 0 14 0 1634.8457 Q02790;F5H1U3 Q02790 53 66 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 3 0.014878 27.029 By MS/MS By MS/MS 2 1 0.68263 0.64637 46.582 3 Plateau 0.44759 0.42099 8.011 2 2 Median NaN NaN NaN 0 0 Median 0.96226 0.93773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51146000 34466000 16680000 40825000 30505000 10319000 0 0 0 10322000 3960900 6360800 0 0 0 0 0 0 0 0 0 35702 2701 37513 188147;188148;188149 191082;191083;191084 191084 3 VFVLDEADVMIATQGHQDQSIR DWCSKLKFIDPKKIKVFVLDEADVMIATQG DVMIATQGHQDQSIRIQRMLPRNCQMLLFS K V F I R I 2 1 0 3 0 3 1 1 1 2 1 0 1 1 0 1 1 0 0 3 0 0 22 0 2471.2115 H3BQK0;Q9UMR2;H3BN59;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 237 258 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 3 0.0068951 22.118 By MS/MS 1 0.89549 0.93197 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89549 0.93197 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3715600 1869600 1846000 0 0 0 0 0 0 3715600 1869600 1846000 0 0 0 0 0 0 0 0 0 35703 4121;1225 37514 188150 191085 191085 1 VFVMPNGMLK KRRLDECEEAFQGTKVFVMPNGMLKSNQQL FQGTKVFVMPNGMLKSNQQLVDIIEKVKPE K V F L K S 0 0 1 0 0 0 0 1 0 0 1 1 2 1 1 0 0 0 0 2 0 0 10 0 1134.593 K9J957;P61289;K7ESG5;K7ENH2;B3KQ25;K7EMD0;K7EPX6;K7EKR3 K9J957 101 110 PSME3 Proteasome activator complex subunit 3 yes no 2 0.034259 32.841 By MS/MS By matching By matching 2 2 1 1.0985 0.9702 22.947 5 Median 0.81654 0.76208 38.102 2 0 Median 1.1117 0.9434 3.9617 2 0 Median NaN NaN NaN 0 0 Median 1.1581 0.98644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28061000 13009000 15051000 24125000 11137000 12988000 3638800 1742900 1895900 0 0 0 296630 129080 167560 0 0 0 0 0 0 35704 1403 37515 188151;188152;188153;188154;188155 191086;191087 191086 2 VFVSPLAK PSAPCPATPAGPKGRVFVSPLAKKLAVEKG PAGPKGRVFVSPLAKKLAVEKGIDLTQVKG R V F A K K 1 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 8 0 859.51674 P10515;H0YDD4;E9PEJ4 P10515 355 362 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.0074447 67.032 By MS/MS By MS/MS 1 1 1.1861 1.0513 27.632 2 Median 0.92262 0.86474 NaN 1 0 Median 1.5248 1.2782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23746000 10863000 12884000 13879000 6926000 6952500 9867800 3936500 5931200 0 0 0 0 0 0 0 0 0 0 0 0 35705 1938 37516 188156;188157 191088;191089;191090;191091 191088 4 VFVVEAAVR KVSGDALQLMVELLKVFVVEAAVRGVRQAQ MVELLKVFVVEAAVRGVRQAQAEDALRVDV K V F V R G 2 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 9 0 988.57057 A8MT69;J3QR01 A8MT69 44 52 STRA13 Centromere protein X yes no 2 0.0034481 65.038 By matching By MS/MS By MS/MS By matching 1 1 1 2 1.1827 0.96411 100.06 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3113 1.3109 NaN 1 0 Median 1.1827 0.85418 NaN 1 0 Median 0.94553 0.96411 NaN 1 0 Median 0.40559 0.33789 155.79 2 0 Median 10862000 5881300 4980800 0 0 0 0 0 0 2945700 1158900 1786800 2001300 937760 1063600 2346700 1059900 1286800 3568400 2724800 843590 35706 542 37517 188158;188159;188160;188161;188162 191092;191093 191093 2 VFVVHIPR VTLRIRRACGPPRVRVFVVHIPRLTGEWAA CGPPRVRVFVVHIPRLTGEWAAPGAPAAVA R V F P R L 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 3 0 0 8 0 965.58107 Q8N726 Q8N726 22 29 CDKN2A Tumor suppressor ARF yes yes 2 0.0040524 83.801 By matching By MS/MS 1 1 1.1304 1.0418 1.8071 2 Median NaN NaN NaN 0 0 Median 1.2255 1.0286 NaN 1 0 Median 1.0427 1.0552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2840400 1474500 1365900 0 0 0 408770 190170 218600 2431600 1284300 1147300 0 0 0 0 0 0 0 0 0 35707 3391 37518 188163;188164 191094;191095 191094 2 VFWDPSVNLFGHVGSTTASR MGFGNLNKVVLCFDRVFWDPSVNLFGHVGS SVNLFGHVGSTTASRGELFLFWNLYKAPIL R V F S R G 1 1 1 1 0 0 0 2 1 0 1 0 0 2 1 3 2 1 0 3 0 0 20 0 2176.0702 O60341;R4GMQ1;R4GMP9 O60341 669 688 KDM1A Lysine-specific histone demethylase 1A yes no 3 1.8179E-07 55.383 By MS/MS 1 0.81602 0.86605 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81602 0.86605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11921000 6107900 5812700 0 0 0 0 0 0 11921000 6107900 5812700 0 0 0 0 0 0 0 0 0 35708 1613 37519 188165 191096;191097 191096 2 VFYELQHSDKPVGTK EGDDSSKSVPLALQRVFYELQHSDKPVGTK VFYELQHSDKPVGTKKLTKSFGWETLDSFM R V F T K K 0 0 0 1 0 1 1 1 1 0 1 2 0 1 1 1 1 0 1 2 0 0 15 1 1746.8941 Q93009;H3BND8;F5H2X1 Q93009 263 277 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2;3;4 2.5979E-10 119.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 4 3 1 0.90598 0.91505 20.866 14 Median 0.95043 0.99723 35.476 3 0 Median 1.258 1.1626 20.479 3 0 Plateau 0.75139 0.87304 12.157 4 0 Median 0.97481 0.92157 2.2205 3 0 Plateau NaN NaN NaN 0 0 Median 0.74382 0.67343 NaN 1 0 Median 114740000 59145000 55593000 14704000 7918800 6785100 27766000 12329000 15437000 47012000 26050000 20962000 24431000 12462000 11969000 0 0 0 825400 385570 439820 35709 3574 37520 188166;188167;188168;188169;188170;188171;188172;188173;188174;188175;188176;188177;188178;188179 191098;191099;191100;191101;191102;191103;191104;191105;191106;191107;191108;191109 191106 12 VFYIGLR LSIHISKNFGADTTKVFYIGLRGEWTELRR NFGADTTKVFYIGLRGEWTELRRHEVTICN K V F L R G 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 1 0 0 7 0 866.50142 Q9GZP4;X6R8S9 Q9GZP4 167 173 PITHD1 PITH domain-containing protein 1 yes no 2 0.021008 59.641 By MS/MS By matching By matching 1 1 1 1.5666 1.3363 16.72 3 Median 1.7181 1.6273 NaN 1 0 Median 1.5666 1.3363 NaN 1 0 Median 1.2494 1.167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9355800 3493200 5862600 8416700 3032200 5384400 286300 125530 160770 652850 335440 317420 0 0 0 0 0 0 0 0 0 35710 3910 37521 188180;188181;188182 191110 191110 1 VFYSLMR LTERDVELLYPVKEKVFYSLMRESGYMHIQ LLYPVKEKVFYSLMRESGYMHIQCTKPDTV K V F M R E 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 7 0 914.46841 P07099 P07099 289 295 EPHX1 Epoxide hydrolase 1 yes yes 2 0.026776 52.683 By MS/MS By matching 1 1 1.4398 1.3283 5.053 2 Median 1.3159 1.2817 NaN 1 0 Median 1.5754 1.3766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6858000 3049000 3809000 6129300 2775000 3354400 728710 274070 454640 0 0 0 0 0 0 0 0 0 0 0 0 35711 1879 37522 188183;188184 191111 191111 1 VFYTGQVVK PKHELSTEYIPDPERVFYTGQVVKVVVLNC IPDPERVFYTGQVVKVVVLNCEPSKERMLL R V F V K V 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 1 3 0 0 9 0 1039.5702 Q14690;A0A3B3IUD7 Q14690 585 593 PDCD11 Protein RRP5 homolog yes no 2 0.0054463 71.491 By MS/MS By MS/MS 1 1 1.3978 1.3577 23.314 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4539 1.601 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3438 1.1513 NaN 1 0 Median 25886000 10626000 15260000 0 0 0 0 0 0 22329000 9099300 13230000 0 0 0 0 0 0 3556800 1526500 2030300 35712 448 37523 188185;188186 191112;191113;191114 191112 3 VGAAEEELQK LQKSVEEEEQVWRAKVGAAEEELQKSRVTV VWRAKVGAAEEELQKSRVTVKHLEEIVEKL K V G Q K S 2 0 0 0 0 1 3 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1072.5401 Q9P2E9;A0A087WVV2;F8W7S5;A0A087WU26 Q9P2E9 1160 1169 RRBP1 Ribosome-binding protein 1 yes no 2 0.0044151 67.897 By MS/MS 1 1.6907 1.4171 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6907 1.4171 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1109100 472620 636520 0 0 0 0 0 0 0 0 0 1109100 472620 636520 0 0 0 0 0 0 35713 4222 37524 188187 191115 191115 1 VGAAEIISR NYRQLVDTTVELANKVGAAEIISRIVDDLK VELANKVGAAEIISRIVDDLKDEAEQYRKM K V G S R I 2 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 O75533 O75533 844 852 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00041524 131.03 By MS/MS By matching By matching By MS/MS By MS/MS 1 1 2 3 3 1.095 0.9637 17.763 10 Median NaN NaN NaN 0 0 Median 1.0996 0.91577 NaN 1 0 Median 1.0543 1.1589 NaN 1 0 Median 1.2394 1.0673 13.742 2 0 Median 0.97143 0.97232 14.606 3 0 Median 1.0904 0.8982 18.059 3 1 Median 189730000 87804000 101930000 0 0 0 15956000 6321800 9634300 24220000 11632000 12589000 10049000 4683900 5364900 104210000 48926000 55281000 35300000 16240000 19060000 35714 1683 37525 188188;188189;188190;188191;188192;188193;188194;188195;188196;188197 191116;191117;191118;191119;191120;191121;191122 191120 7 VGAAGPAPGTGSGPLR RVLLPVWEAEGLGLRVGAAGPAPGTGSGPL GAAGPAPGTGSGPLRAARDSIELRRGACVR R V G L R A 3 1 0 0 0 0 0 5 0 0 1 0 0 0 3 1 1 0 0 1 0 0 16 0 1363.7208 Q5T447 Q5T447 75 90 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes yes 2 0.0062136 31.843 By MS/MS 1 0.95628 0.84153 NaN 1 Median NaN NaN NaN 0 0 Median 0.95628 0.84153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1438200 723620 714540 0 0 0 1438200 723620 714540 0 0 0 0 0 0 0 0 0 0 0 0 35715 3088 37526 188198 191123 191123 1 VGAEDADGIDMAYR EAIQKGTGARPYTGKVGAEDADGIDMAYRV KVGAEDADGIDMAYRVLADHARTITVALAD K V G Y R V 3 1 0 3 0 0 1 2 0 1 0 0 1 0 0 0 0 0 1 1 0 0 14 0 1481.6457 P49588 P49588 283 296 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 5.4319E-08 113.63 By MS/MS By MS/MS By matching 3 2 1 1.0638 1.0567 10.607 6 Median 1.1126 0.87383 11.706 3 0 Plateau 1.2594 1.0595 2.06 2 2 Median 1.0172 1.0925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67210000 31532000 35677000 51550000 24572000 26979000 12397000 5503700 6893600 3262200 1457100 1805100 0 0 0 0 0 0 0 0 0 35716 2385 37527;37528 188199;188200;188201;188202;188203;188204 191124;191125;191126;191127;191128;191129 191125 1101 6 VGAEELTADQNLK VKSHFIEIFLEELTKVGAEELTADQNLKFI TKVGAEELTADQNLKFIDPFCRIAARTKDS K V G L K F 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1386.6991 P56182 P56182 180 192 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 4.8234E-07 119.16 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.1434 1.0639 21.805 7 Median 0.57364 0.61756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0809 1.0631 NaN 1 0 Median 1.2399 1.0639 NaN 1 0 Median 1.1349 1.1205 0.27625 2 0 Median 1.2639 1.0446 12.629 2 0 Median 96149000 43043000 53106000 4971300 3173700 1797600 0 0 0 8268200 4098900 4169300 3646900 1368600 2278300 58407000 26680000 31727000 20855000 7721900 13133000 35717 2507 37529 188205;188206;188207;188208;188209;188210;188211 191130;191131;191132;191133;191134;191135;191136 191132 7 VGAGAGAAPFR PFYERVRPAYSLEPRVGAGAGAAPFREVDE LEPRVGAGAGAAPFREVDEISPEDDQRANR R V G F R E 4 1 0 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 1 0 0 11 0 972.51411 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 305 315 RBM15 Putative RNA-binding protein 15 yes no 2 0.0026196 60.91 By MS/MS By MS/MS 1 1 0.89421 0.74487 29.046 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0732 0.91471 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7451 0.60657 NaN 1 0 Median 2578500 1320600 1257900 0 0 0 0 0 0 0 0 0 1216800 639180 577640 0 0 0 1361600 681400 680240 35718 60 37530 188212;188213 191137;191138 191137 1 VGAHAGEYGAEALER ______________________________ VGAHAGEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 A0A2R8Y7C0;P69905 A0A2R8Y7C0 8 22 HBA1 Hemoglobin subunit alpha yes no 3 3.7494E-06 73.022 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1604000 1604000 0 0 0 0 0 0 0 0 0 0 1604000 1604000 0 0 0 0 0 0 0 35719 380 37531 188214 191139 191139 1 VGAIPANALDDGQWSQGLISAAR KAASAAQRELVAQGKVGAIPANALDDGQWS LDDGQWSQGLISAARMVAAATNNLCEAANA K V G A R M 5 1 1 2 0 2 0 3 0 2 2 0 0 0 1 2 0 1 0 1 0 0 23 0 2309.1764 Q9Y490 Q9Y490 2376 2398 TLN1 Talin-1 yes yes 2;3 2.1226E-19 91.032 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 0.95058 0.82911 16.123 9 Median 0.76918 0.72196 4.0704 2 0 Median 0.9586 0.8166 8.2046 4 0 Median 0.98958 1.0968 5.6367 2 0 Median 1.0252 0.89569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37441000 19501000 17939000 25490000 13765000 11725000 4883200 2412800 2470500 6836200 3199000 3637200 231580 124590 106990 0 0 0 0 0 0 35720 4441 37532 188215;188216;188217;188218;188219;188220;188221;188222;188223 191140;191141;191142;191143;191144;191145;191146;191147;191148;191149;191150 191145 11 VGAVAGNDWLIWDITR VPLMSAHWCLKNTFKVGAVAGNDWLIWDIT GAVAGNDWLIWDITRSSYPQNKRPVHMDRA K V G T R S 2 1 1 2 0 0 0 2 0 2 1 0 0 0 0 0 1 2 0 2 0 0 16 0 1784.921 Q8NFH4 Q8NFH4 224 239 NUP37 Nucleoporin Nup37 yes yes 2 1.7894E-06 88.441 By MS/MS By MS/MS By matching 2 2 1 1.2344 1.2071 6.6872 5 Median NaN NaN NaN 0 0 Median 1.4351 1.2203 1.5366 2 0 Median 1.1051 1.1047 4.0725 2 0 Median NaN NaN NaN 0 0 Median 1.2344 1.2669 NaN 1 0 Median NaN NaN NaN 0 0 Median 12124000 5403400 6720200 0 0 0 2705500 1074100 1631400 9082800 4167500 4915300 0 0 0 335310 161810 173510 0 0 0 35721 3436 37533 188224;188225;188226;188227;188228 191151;191152;191153;191154 191152 4 VGAVDADKHHSLGGQYGVQGFPTIK PEWKKAATALKDVVKVGAVDADKHHSLGGQ SLGGQYGVQGFPTIKIFGSNKNRPEDYQGG K V G I K I 2 0 0 2 0 2 0 5 2 1 1 2 0 1 1 1 1 0 1 3 0 0 25 1 2580.3085 Q15084 Q15084 78 102 PDIA6 Protein disulfide-isomerase A6 yes yes 3;4;5 3.5114E-05 32.702 By MS/MS By matching By matching By matching 3 2 1 1 1.0221 1.0243 16.899 7 Median 1.0221 0.96747 14.492 3 0 Median 1.0804 1.0136 20.727 2 0 Median 1.0142 1.0628 NaN 1 0 Median 1.3468 1.2792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 141790000 66092000 75695000 112090000 52397000 59692000 12911000 5872500 7038100 6816200 3635400 3180800 9971200 4187200 5784000 0 0 0 0 0 0 35722 2927 37534 188229;188230;188231;188232;188233;188234;188235 191155;191156;191157;191158;191159;191160 191156 6 VGDAIPAVEVFEGEPGNK VRSFSRAAAAMAPIKVGDAIPAVEVFEGEP AIPAVEVFEGEPGNKVNLAELFKGKKGVLF K V G N K V 2 0 1 1 0 0 3 3 0 1 0 1 0 1 2 0 0 0 0 3 0 0 18 0 1826.905 P30044 P30044 58 75 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 1.1417E-06 84.289 By MS/MS By MS/MS By MS/MS 1 1 1 0.57467 0.56016 23.328 3 Median 0.57376 0.54137 NaN 1 0 Median 0.94766 0.82396 NaN 1 0 Median 0.57467 0.56016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18414000 11248000 7166500 13534000 8387400 5146600 1120800 558260 562500 3759400 2302000 1457400 0 0 0 0 0 0 0 0 0 35723 2181 37535 188236;188237;188238 191161;191162;191163;191164;191165;191166;191167 191166 7 VGDDPAVWQLK ALGDLISATKAAAGKVGDDPAVWQLKNSAK AAGKVGDDPAVWQLKNSAKVMVTNVTSLLK K V G L K N 1 0 0 2 0 1 0 1 0 0 1 1 0 0 1 0 0 1 0 2 0 0 11 0 1226.6295 Q9Y490 Q9Y490 2105 2115 TLN1 Talin-1 yes yes 2 0.00021058 99.442 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0243 1.0245 39.01 6 Median 0.75087 0.72233 NaN 1 0 Median 1.0516 0.92606 7.7012 2 0 Median 1.015 1.1228 6.3725 2 2 Median NaN NaN NaN 0 0 Median 2.1339 2.2528 NaN 1 0 Median NaN NaN NaN 0 0 Median 55321000 31715000 23606000 21718000 12175000 9542600 9140100 4602800 4537300 21869000 14151000 7717900 0 0 0 2593800 785410 1808400 0 0 0 35724 4441 37536 188239;188240;188241;188242;188243;188244 191168;191169;191170;191171;191172;191173 191168 6 VGDDVEFEVSSDRR FFHCSQYNGNLQDLKVGDDVEFEVSSDRRT KVGDDVEFEVSSDRRTGKPIAVKLVKIKQE K V G R R T 0 2 0 3 0 0 2 1 0 0 0 0 0 1 0 2 0 0 0 3 0 0 14 1 1608.738 O75534;E9PLD4 O75534 65 78 CSDE1 Cold shock domain-containing protein E1 yes no 3 0.00019642 59.185 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 1.1067 1.1101 8.7284 4 Median 0.99057 1.0156 NaN 1 0 Median 1.1271 1.1151 NaN 1 0 Median 1.0868 1.2557 NaN 1 0 Median 1.2471 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21394000 9997800 11396000 5497500 2916400 2581100 4363800 1689400 2674400 8034200 3864400 4169800 3498400 1527600 1970900 0 0 0 0 0 0 35725 1684 37537 188245;188246;188247;188248 191174;191175;191176;191177;191178 191178 5 VGDFVATDLDTGRPSTTVR SKTYVVTGNMGSNDKVGDFVATDLDTGRPS VATDLDTGRPSTTVRYVMGNNPADLLAVDS K V G V R Y 1 2 0 3 0 0 0 2 0 0 1 0 0 1 1 1 4 0 0 3 0 0 19 1 2006.0069 Q02413 Q02413 404 422 DSG1 Desmoglein-1 yes yes 3 4.3484E-15 90.714 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 4 1 0.21205 0.2147 98.255 8 Median 0.56865 0.61795 NaN 1 1 Median 0.21705 0.20343 NaN 1 1 Median 0.20619 0.2266 NaN 1 1 Median 0.27958 0.25841 119.3 4 4 Linear 0.26205 0.28348 NaN 1 1 Median NaN NaN NaN 0 0 Median 26021000 22522000 3499200 7880000 6427100 1452900 4575600 4261200 314440 6545300 5906700 638650 3854100 3399800 454370 3166400 2527500 638860 0 0 0 35726 2698 37538 188249;188250;188251;188252;188253;188254;188255;188256 191179;191180;191181;191182;191183;191184;191185;191186 191179 8 VGDGDLSAEEIPENEVSLR SPFVPEETMEEQKTKVGDGDLSAEEIPENE DLSAEEIPENEVSLRRAVSKKKTALGKNHS K V G L R R 1 1 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 19 0 2027.9647 Q14684 Q14684 239 257 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 7.5472E-13 99.531 By MS/MS By matching 1 1 0.79326 0.75775 6.106 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74532 0.79119 NaN 1 0 Median 0.84429 0.72573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11529000 6249400 5279100 0 0 0 0 0 0 11297000 6109200 5187400 231870 140160 91707 0 0 0 0 0 0 35727 2890 37539 188257;188258 191187;191188;191189 191188 3 VGDGDLSAEEIPENEVSLRR SPFVPEETMEEQKTKVGDGDLSAEEIPENE LSAEEIPENEVSLRRAVSKKKTALGKNHSR K V G R R A 1 2 1 2 0 0 4 2 0 1 2 0 0 0 1 2 0 0 0 2 0 0 20 1 2184.0659 Q14684 Q14684 239 258 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 4.272E-14 100.21 By MS/MS By matching 2 1 0.76433 0.85293 23.552 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7763 0.88151 4.6608 2 0 Median NaN NaN NaN 0 0 Median 0.54171 0.58858 NaN 1 0 Median NaN NaN NaN 0 0 Median 36287000 18845000 17442000 0 0 0 0 0 0 28967000 14303000 14664000 0 0 0 7319700 4541400 2778300 0 0 0 35728 2890 37540 188259;188260;188261 191190;191191 191191 2 VGDGMNAYMAYR GDIFDIEIGVSDPEKVGDGMNAYMAYRVTT PEKVGDGMNAYMAYRVTTKTSLSMFSKSEF K V G Y R V 2 1 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 2 1 0 0 12 0 1346.5747 O60749;D6RC15 O60749 152 163 SNX2 Sorting nexin-2 yes no 2 3.7171E-06 107.15 By MS/MS By MS/MS By MS/MS 2 2 1 0.8949 0.88042 15.329 5 Median 0.99056 0.95818 11.97 2 0 Median 0.87578 0.7702 4.9928 2 0 Median 0.99171 1.0408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21399000 10541000 10858000 13538000 6776300 6762100 3016800 1545900 1470900 4843800 2219100 2624800 0 0 0 0 0 0 0 0 0 35729 1629 37541 188262;188263;188264;188265;188266 191192;191193;191194 191192 3 VGDKVLLPEYGGTK GSKGKGGEIQPVSVKVGDKVLLPEYGGTKV KVGDKVLLPEYGGTKVVLDDKDYFLFRDGD K V G T K V 0 0 0 1 0 0 1 3 0 0 2 2 0 0 1 0 1 0 1 2 0 0 14 1 1474.8031 P61604;B8ZZL8;B8ZZ54 P61604 67 80 HSPE1 10 kDa heat shock protein, mitochondrial yes no 2;3 1.6903E-08 115.14 By MS/MS By MS/MS By matching 2 2 1 0.99097 0.93874 169.58 5 Median 0.37158 0.34798 140.35 2 1 Median 0.18626 0.16147 269.26 2 1 Median 0.99097 1.0155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 555550000 475260000 80283000 213550000 160200000 53344000 340330000 314330000 25991000 1672200 724760 947480 0 0 0 0 0 0 0 0 0 35730 2560 37542 188267;188268;188269;188270;188271 191195;191196;191197;191198;191199;191200;191201;191202;191203 191196 9 VGDLILAHLHK PIAVVASGIWELHPRVGDLILAHLHKKCPY LHPRVGDLILAHLHKKCPYSVPFYPTFKEG R V G H K K 1 0 0 1 0 0 0 1 2 1 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1214.7135 Q53GS7 Q53GS7 516 526 GLE1 Nucleoporin GLE1 yes yes 3 0.002372 39.917 By MS/MS By matching 2 1 1.4412 1.5178 7.0789 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4049 1.4866 2.9425 2 0 Median NaN NaN NaN 0 0 Median 1.6163 1.6714 NaN 1 0 Median NaN NaN NaN 0 0 Median 10022000 4218700 5803800 0 0 0 0 0 0 5559600 2511700 3047900 0 0 0 4462900 1707000 2755800 0 0 0 35731 3031 37543 188272;188273;188274 191204;191205 191205 2 VGDLYSDLR FTKWVNSHLARVTCRVGDLYSDLRDGRNLL ARVTCRVGDLYSDLRDGRNLLRLLEVLSGE R V G L R D 0 1 0 2 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1036.5189 O15020;A4QPE4;E9PJZ2;A0A494C1G7 O15020 78 86 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 2 0.001354 82.452 By MS/MS By matching 1 1 1.3607 1.3386 15.836 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0876 1.1968 NaN 1 0 Median 1.7025 1.4972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6267100 2748800 3518300 0 0 0 0 0 0 5610800 2507800 3103000 656320 240980 415350 0 0 0 0 0 0 35732 1512 37544 188275;188276 191206;191207 191206 2 VGDPQELNGITR PESFEYIEAHGTGTKVGDPQELNGITRALC GTKVGDPQELNGITRALCATRQEPLLIGST K V G T R A 0 1 1 1 0 1 1 2 0 1 1 0 0 0 1 0 1 0 0 1 0 0 12 0 1297.6626 P49327;A0A0U1RQF0 P49327 299 310 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 2.7012E-32 160.36 By MS/MS By MS/MS 2 4 1.0489 0.87879 14.986 5 Median 0.76367 0.72711 10.223 2 0 Median 1.1792 1.0007 6.8753 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101840000 50454000 51381000 58502000 31186000 27316000 43334000 19268000 24066000 0 0 0 0 0 0 0 0 0 0 0 0 35733 2377 37545 188277;188278;188279;188280;188281;188282 191208;191209;191210;191211;191212;191213;191214;191215;191216;191217 191212 10 VGDQILLAIK APRCIHVYKKNGVGKVGDQILLAIKGQKKK NGVGKVGDQILLAIKGQKKKALIVGHCMPG K V G I K G 1 0 0 1 0 1 0 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1068.6543 Q6P1L8 Q6P1L8 69 78 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 2 0.00041576 75.738 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.2472 1.1787 12.396 5 Median 1.159 1.0747 13.064 2 0 Median 1.5304 1.2653 NaN 1 0 Median 1.1968 1.1495 NaN 1 0 Median 1.6727 1.3657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31693000 13995000 17698000 18430000 8494800 9935400 4913200 2069200 2844000 7514600 3142900 4371700 835310 288240 547070 0 0 0 0 0 0 35734 3151 37546 188283;188284;188285;188286;188287 191218;191219;191220;191221;191222;191223 191222 6 VGDQVWLFIDEPR GGYVLHIGTIYGDLKVGDQVWLFIDEPRRR LKVGDQVWLFIDEPRRRPIMSNHTATHILN K V G P R R 0 1 0 2 0 1 1 1 0 1 1 0 0 1 1 0 0 1 0 2 0 0 13 0 1572.7936 P49588;H3BPK7 P49588 585 597 AARS Alanine--tRNA ligase, cytoplasmic yes no 2 0.002783 50.284 By MS/MS By MS/MS 1 1 1.0877 1.0136 7.5799 2 Median 0.96967 0.96066 NaN 1 0 Median 1.2201 1.0694 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3528300 1790100 1738300 1925100 1079300 845840 1603200 710770 892450 0 0 0 0 0 0 0 0 0 0 0 0 35735 2385 37547 188288;188289 191224;191225 191224 2 VGDTSLDPNDFDFTVTGR KAFRSKVELIAYFEKVGDTSLDPNDFDFTV TSLDPNDFDFTVTGRGSPSRREQKPPKKPK K V G G R G 0 1 1 4 0 0 0 2 0 0 1 0 0 2 1 1 3 0 0 2 0 0 18 0 1954.8909 P51608;A0A087X1U4;I6LM39;A0A087WVW7 P51608 145 162 MECP2 Methyl-CpG-binding protein 2 yes no 2 0.00081418 50.675 By MS/MS 1 15.212 15.436 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15.212 15.436 NaN 1 1 Median NaN NaN NaN 0 0 Median 14361000 1457700 12904000 0 0 0 0 0 0 0 0 0 0 0 0 14361000 1457700 12904000 0 0 0 35736 2437 37548 188290 191226 191226 1 VGDVTPQVK TKESPARKAAPAPGKVGDVTPQVKGGALPP APAPGKVGDVTPQVKGGALPPAKRAKKPEE K V G V K G 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 3 0 0 9 0 941.5182 E7ETY2;H0Y8Y7;Q13428 Q13428 245 253 TCOF1 Treacle protein no no 2 0.023564 38.086 By matching By matching By MS/MS By matching 1 1 2 1 1.0623 1.0402 17.819 5 Median 0.89038 0.86872 NaN 1 0 Median 1.0623 0.93196 NaN 1 0 Median 1.1397 1.2451 13.708 2 0 Median 1.1446 1.0402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6463300 3321000 3142300 275970 144210 131760 2293400 1274300 1019100 3144300 1583100 1561200 749610 319400 430210 0 0 0 0 0 0 35737 2816;891 37549 188291;188292;188293;188294;188295 191227 191227 1 VGDVVEFR FPEGGKMSQYLDSLKVGDVVEFRGPSGLLT QYLDSLKVGDVVEFRGPSGLLTYTGKGHFN K V G F R G 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 3 0 0 8 0 919.47633 Q9UHQ9;H7C0R7 Q9UHQ9 140 147 CYB5R1 NADH-cytochrome b5 reductase 1 yes no 2 0.0059586 73.26 By MS/MS By MS/MS By MS/MS 1 1 1 1.6093 1.3421 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6093 1.3421 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2598600 1075800 1522800 0 0 0 0 0 0 0 0 0 2598600 1075800 1522800 0 0 0 0 0 0 35738 4280 37550 188296;188297;188298 191228;191229;191230;191231 191230 4 VGDVYIPR TSPDTLRRVFEKYGRVGDVYIPRDRYTKES VFEKYGRVGDVYIPRDRYTKESRGFAFVRF R V G P R D 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 2 0 0 8 0 917.49707 J3QL05;J3KP15;Q01130;Q9BRL6 J3QL05 40 47 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 0.0024312 119.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 4 2 4 6 1.0716 0.92378 21.674 21 Median 0.8094 0.76038 33.629 3 0 Median 1.1619 0.96452 10.236 4 0 Median 0.90159 0.87232 24.179 3 0 Median 1.2104 0.98125 9.1658 2 0 Median 0.95549 0.96611 8.0447 4 1 Median 1.1677 0.95808 15.321 5 0 Median 502670000 246920000 255750000 197050000 98608000 98438000 63979000 28840000 35140000 97641000 50552000 47088000 63971000 30028000 33943000 67510000 33816000 33695000 12524000 5074200 7450100 35739 1307 37551 188299;188300;188301;188302;188303;188304;188305;188306;188307;188308;188309;188310;188311;188312;188313;188314;188315;188316;188317;188318;188319;188320;188321 191232;191233;191234;191235;191236;191237;191238;191239;191240;191241;191242;191243;191244;191245;191246;191247;191248;191249;191250;191251;191252;191253;191254;191255;191256;191257;191258;191259;191260;191261 191233 30 VGDYGSLSGR EFKECHAIRNYTLWRVGDYGSLSGREKMMA YTLWRVGDYGSLSGREKMMAEIYANGPISC R V G G R E 0 1 0 1 0 0 0 3 0 0 1 0 0 0 0 2 0 0 1 1 0 0 10 0 1009.4829 Q9UBR2 Q9UBR2 190 199 CTSZ Cathepsin Z yes yes 2 0.000715 105.52 By MS/MS By MS/MS 1 3 1.0657 0.97178 46.613 4 Median 1.1131 1.0418 NaN 1 0 Median 1.0203 0.9065 55.661 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39917000 17882000 22035000 18023000 8785400 9237600 21894000 9097000 12797000 0 0 0 0 0 0 0 0 0 0 0 0 35740 4244 37552 188322;188323;188324;188325 191262;191263;191264 191263 3 VGDYVYFENSSSNPYLIR ______________________________ YVYFENSSSNPYLIRRIEELNKTANGNVEA R V G I R R 0 1 2 1 0 0 1 1 0 1 1 0 0 1 1 3 0 0 3 2 0 0 18 0 2122.0007 E7ESY4;Q13330;H0YIT0;E7EQY4;E7EV10;Q9BTC8;E9PCS8;E9PF88 E7ESY4 8 25 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 2;3 1.1624E-14 111.39 By MS/MS By matching By MS/MS 3 2 4 0.88969 0.90035 43.843 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73579 0.75098 59.931 3 1 Median 1.0713 0.90505 1.6316 2 0 Median 1.0355 1.0583 24.834 4 1 Median NaN NaN NaN 0 0 Median 31718000 16830000 14887000 0 0 0 0 0 0 20348000 11331000 9017100 675420 343790 331630 10694000 5155300 5538500 0 0 0 35741 888;881 37553 188326;188327;188328;188329;188330;188331;188332;188333;188334 191265;191266;191267;191268;191269;191270;191271;191272;191273 191267 9 VGDYVYFENSSSNPYLVR ______________________________ YVYFENSSSNPYLVRRIEELNKTANGNVEA R V G V R R 0 1 2 1 0 0 1 1 0 0 1 0 0 1 1 3 0 0 3 3 0 0 18 0 2107.9851 O94776 O94776 8 25 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 1.1626E-07 89.013 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 4 1 0.87529 0.87801 16.992 10 Median 0.99831 0.98743 19.557 2 2 Median NaN NaN NaN 0 0 Median 0.90916 0.93851 6.9807 2 0 Median 0.86853 0.73796 NaN 1 0 Median 0.88181 0.91259 17.366 4 0 Median 0.85144 0.72 NaN 1 0 Median 40099000 20287000 19812000 3863100 1971900 1891300 0 0 0 24096000 12218000 11878000 456800 216210 240590 11507000 5781600 5725700 175480 98664 76820 35742 1723 37554 188335;188336;188337;188338;188339;188340;188341;188342;188343;188344 191274;191275;191276;191277;191278;191279;191280;191281;191282;191283 191277 10 VGEEFEEQTVDGR IKTSTTVRTTEINFKVGEEFEEQTVDGRPC FKVGEEFEEQTVDGRPCKSLVKWESENKMV K V G G R P 0 1 0 1 0 1 4 2 0 0 0 0 0 1 0 0 1 0 0 2 0 0 13 0 1493.6634 P29373;Q5SYZ4 P29373 68 80 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2 2.0352E-06 118.4 By MS/MS By matching 1 1 1.0873 1.007 85.432 2 Median NaN NaN NaN 0 0 Median 2.1748 1.8423 NaN 1 0 Median 0.54359 0.55037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5042000 2275400 2766600 0 0 0 2777600 821270 1956300 2264400 1454100 810330 0 0 0 0 0 0 0 0 0 35743 2171 37555 188345;188346 191284 191284 1 VGEFCHNR QVVVLTNTPLEDQLRVGEFCHNRGIKLVVA PLEDQLRVGEFCHNRGIKLVVADTRGLFGQ R V G N R G 0 1 1 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1017.445 P22314;Q5JRR9;Q5JRS0;Q5JRS2 P22314 175 182 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes no 2 0.0071131 68.422 By MS/MS 2 1.2878 1.1195 12.069 2 Median NaN NaN NaN 0 0 Median 1.2878 1.1195 12.069 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3999600 1648600 2350900 0 0 0 3999600 1648600 2350900 0 0 0 0 0 0 0 0 0 0 0 0 35744 2100 37556 188347;188348 191285;191286;191287;191288;191289 191286 5 VGEFSGANK VKCMPTFQFFKKGQKVGEFSGANKEKLEAT FKKGQKVGEFSGANKEKLEATINELV____ K V G N K E 1 0 1 0 0 0 1 2 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 907.43995 P10599 P10599 86 94 TXN Thioredoxin yes yes 2 7.1721E-05 138.83 By MS/MS By MS/MS By matching By MS/MS 5 4 1 2 1.0988 0.96193 7.5983 11 Median 1.1635 1.0433 7.2922 4 1 Linear 1.0955 0.92582 8.7892 4 0 Median 1.07 1.0561 NaN 1 0 Median 1.1146 0.94942 1.8523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83940000 37531000 46409000 34718000 16030000 18688000 41503000 18008000 23495000 4437400 2049900 2387500 3281300 1443000 1838400 0 0 0 0 0 0 35745 1942 37557 188349;188350;188351;188352;188353;188354;188355;188356;188357;188358;188359;188360 191290;191291;191292;191293;191294;191295;191296;191297;191298;191299 191293 10 VGEFSGANKEK VKCMPTFQFFKKGQKVGEFSGANKEKLEAT KGQKVGEFSGANKEKLEATINELV______ K V G E K L 1 0 1 0 0 0 2 2 0 0 0 2 0 1 0 1 0 0 0 1 0 0 11 1 1164.5775 P10599 P10599 86 96 TXN Thioredoxin yes yes 2 0.012569 52.278 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.1162 0.94929 22.669 6 Median 1.1224 1.0511 NaN 1 0 Median 1.1924 0.93555 24.218 2 0 Median 1.1784 1.2146 NaN 1 0 Median 1.0222 0.85734 NaN 1 0 Median 0.67159 0.67225 NaN 1 0 Median NaN NaN NaN 0 0 Median 3681700 1682200 1999500 1715100 775510 939550 1366300 620670 745600 432570 193750 238820 95138 53806 41332 72620 38471 34149 0 0 0 35746 1942 37558 188361;188362;188363;188364;188365;188366 191300;191301 191300 2 VGEIEFEGLMR SGGGGVNMGSHQKWKVGEIEFEGLMRTLDN QKWKVGEIEFEGLMRTLDNLGYRTGYAYRH K V G M R T 0 1 0 0 0 0 3 2 0 1 1 0 1 1 0 0 0 0 0 1 0 0 11 0 1278.6278 Q9UEY8 Q9UEY8 366 376 ADD3 Gamma-adducin yes yes 2 0.0092274 39.022 By MS/MS By matching 1 1 0.97996 0.94226 0.2108 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87673 0.94086 NaN 1 0 Median 1.0953 0.94367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4422600 2233300 2189300 0 0 0 0 0 0 2818800 1559300 1259500 1603800 674040 929730 0 0 0 0 0 0 35747 4257 37559 188367;188368 191302;191303 191302 2 VGEIFSAAGAAFTK ______________________________ KVGEIFSAAGAAFTKLGELTMQLHPVADSS K V G T K L 4 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 1 0 0 14 0 1367.7085 F8W038;Q8IXM2 F8W038 8 21 C17orf49;BAP18 Chromatin complexes subunit BAP18 yes no 2 6.2255E-07 119.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 0.92256 0.93072 14.761 8 Median 0.95698 0.89078 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88937 0.83434 10.67 3 0 Median 1.5213 1.2582 NaN 1 0 Median 0.84942 0.90755 9.7661 2 0 Median 1.377 1.0918 NaN 1 0 Median 90950000 47247000 43703000 16315000 8945400 7369200 0 0 0 50504000 25972000 24531000 1489600 608040 881520 21750000 11492000 10258000 891050 229070 661980 35748 1079 37560 188369;188370;188371;188372;188373;188374;188375;188376 191304;191305;191306;191307;191308;191309;191310;191311;191312;191313;191314 191306 11 VGEIVVFR GDLLFLTNRVEDPIRVGEIVVFRIEGREIP RVEDPIRVGEIVVFRIEGREIPIVHRVLKI R V G F R I 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 3 0 0 8 0 917.53345 H0YNX5;H0YNA5;H0YNG3;P67812 H0YNX5 53 60 SEC11A Signal peptidase complex catalytic subunit SEC11;Signal peptidase I;Signal peptidase complex catalytic subunit SEC11A yes no 2 1.0445E-06 127.84 By MS/MS By MS/MS By MS/MS 3 1 1 1.3007 1.1214 10.393 4 Linear 1.1247 1.0834 11.012 2 1 Median 1.2968 1.0739 NaN 1 0 Median 1.2591 1.273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99989000 43522000 56467000 42126000 18260000 23866000 32974000 13974000 19000000 24889000 11288000 13601000 0 0 0 0 0 0 0 0 0 35749 1202 37561 188377;188378;188379;188380;188381 191315;191316;191317;191318;191319;191320;191321 191315 7 VGELKDDDFEK QQRKRLEAFLTQKQKVGELKDDDFEKISEL QKQKVGELKDDDFEKISELGAGNGGVVFKV K V G E K I 0 0 0 3 0 0 2 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 11 1 1293.6089 Q02750 Q02750 60 70 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 3 0.00023844 63.408 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0067 0.96491 7.3117 4 Median 0.98061 0.91817 NaN 1 0 Median 1.027 0.93017 NaN 1 0 Median 0.98682 1.0754 NaN 1 0 Median 1.1241 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9751700 4613600 5138100 1644700 793110 851630 2443900 1201500 1242500 4688700 2145900 2542800 974380 473130 501250 0 0 0 0 0 0 35750 2700 37562 188382;188383;188384;188385 191322;191323;191324;191325;191326;191327 191327 6 VGELKDDDFER QQKKRLEAFLTQKAKVGELKDDDFERISEL QKAKVGELKDDDFERISELGAGNGGVVTKV K V G E R I 0 1 0 3 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 11 1 1321.615 P36507;A0A1B0GUL7 P36507 64 74 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 3 0.0049726 36.679 By matching By MS/MS By MS/MS 1 1 1 1.0779 1.154 22.619 3 Median 1.0779 1.154 NaN 1 0 Median 0.97997 0.91968 NaN 1 0 Median 1.2736 1.4458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7304300 3698000 3606400 1933400 969470 963910 3758800 1956800 1802000 1612200 771670 840490 0 0 0 0 0 0 0 0 0 35751 2256 37563 188386;188387;188388 191328;191329 191329 2 VGELTNLTQIELR ALHLGNNVLQSLPSRVGELTNLTQIELRGN SRVGELTNLTQIELRGNRLECLPVELGECP R V G L R G 0 1 1 0 0 1 2 1 0 1 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1484.8199 Q8IWT6 Q8IWT6 750 762 LRRC8A Volume-regulated anion channel subunit LRRC8A yes yes 2 2.0999E-05 94.297 By matching By MS/MS 1 1 1.6011 1.4902 21.998 2 Median 1.7459 1.741 NaN 1 0 Median 1.4683 1.2755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2902600 1236000 1666600 730500 357630 372860 2172100 878320 1293700 0 0 0 0 0 0 0 0 0 0 0 0 35752 3328 37564 188389;188390 191330;191331 191330 2 VGENADSQIK SSRQSIQKYIKSHYKVGENADSQIKLSIKR KSHYKVGENADSQIKLSIKRLVTTGVLKQT K V G I K L 1 0 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1059.5197 P07305 P07305 60 69 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0011606 67.993 By matching By MS/MS By MS/MS 1 2 2 0.96948 1.0097 40.794 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96948 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68433 0.68769 10.931 2 0 Median 1.844 1.5396 6.2661 2 0 Median 13493000 7241000 6252500 0 0 0 0 0 0 769080 360520 408560 0 0 0 10981000 6272500 4708700 1743200 607910 1135300 35753 1884 37565 188391;188392;188393;188394;188395 191332;191333;191334;191335;191336;191337 191332 6 VGEPVALSEEER PMAHPPNLGPPPPLRVGEPVALSEEERLKL PLRVGEPVALSEEERLKLAQQQAALLMQQE R V G E R L 1 1 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1313.6463 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3;E9PIL8 Q13435 135 146 SF3B2 Splicing factor 3B subunit 2 yes no 2 3.1534E-06 146.71 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 3 2 0.86659 0.84309 54.546 10 Median 0.84898 0.81948 NaN 1 0 Median 1.1032 0.91587 NaN 1 0 Median 0.57443 0.66515 37.542 2 0 Median 1.0397 0.879 NaN 1 0 Median 0.77345 0.77368 97.604 3 1 Median 0.96837 0.80442 11.463 2 0 Median 140500000 74420000 66082000 7552100 4222500 3329600 22033000 9418000 12615000 30471000 17414000 13057000 20242000 9718000 10524000 55161000 31142000 24019000 5043100 2506000 2537100 35754 2817 37566 188396;188397;188398;188399;188400;188401;188402;188403;188404;188405 191338;191339;191340;191341;191342;191343;191344;191345;191346;191347;191348;191349;191350;191351 191344 14 VGEPVALSEEERLK PMAHPPNLGPPPPLRVGEPVALSEEERLKL RVGEPVALSEEERLKLAQQQAALLMQQEER R V G L K L 1 1 0 0 0 0 4 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 14 1 1554.8253 Q13435;E9PPJ0;H0YCG1;E9PJ04;E9PJT3;E9PIL8 Q13435 135 148 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 2.1212E-10 174.4 By matching By MS/MS By MS/MS By MS/MS 2 2 6 3 0.77779 0.84883 18.379 13 Median 0.66754 0.69584 4.908 2 0 Median NaN NaN NaN 0 0 Median 0.77404 0.87834 4.8324 2 0 Median NaN NaN NaN 0 0 Median 0.8298 0.91436 14.771 6 0 Median 0.76884 0.66362 19.328 3 0 Median 323810000 175470000 148340000 33143000 18867000 14276000 0 0 0 103350000 55233000 48115000 0 0 0 178360000 96326000 82032000 8959500 5043500 3916000 35755 2817 37567 188406;188407;188408;188409;188410;188411;188412;188413;188414;188415;188416;188417;188418 191352;191353;191354;191355;191356;191357;191358;191359;191360;191361;191362;191363;191364 191362 13 VGEQAQVVIIDMNDPSNPIR TLTMESDKFICIREKVGEQAQVVIIDMNDP QVVIIDMNDPSNPIRRPISADSAIMNPASK K V G I R R 1 1 2 2 0 2 1 1 0 3 0 0 1 0 2 1 0 0 0 3 0 0 20 0 2194.1052 A0A087WVQ6;Q00610;J3KS13;J3KSQ2;J3QL20 A0A087WVQ6 44 63 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 2.8683E-08 73.156 By MS/MS By MS/MS By matching 2 1 2 0.93284 0.89135 23.304 5 Median 1.1572 1.1093 30.937 2 1 Median 0.99045 0.84202 NaN 1 0 Median 0.75505 0.82604 14.634 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14652000 6941700 7710000 9380200 4201200 5178900 3410000 1702700 1707400 1861600 1037800 823760 0 0 0 0 0 0 0 0 0 35756 44 37568 188419;188420;188421;188422;188423 191365;191366;191367;191368 191365 4 VGESVFHTTR LEEEAIIMKDVPDWKVGESVFHTTRWVPPL VPDWKVGESVFHTTRWVPPLIGELYGLRTT K V G T R W 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 1 2 0 0 2 0 0 10 0 1131.5673 Q9P0J0 Q9P0J0 106 115 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes yes 2 0.00072672 101.65 By MS/MS By MS/MS 1 1 1.1938 1.108 42.937 2 Median NaN NaN NaN 0 0 Median 1.7635 1.5011 NaN 1 0 Median 0.80817 0.81787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18403000 7225700 11177000 0 0 0 15971000 5739600 10231000 2432200 1486100 946070 0 0 0 0 0 0 0 0 0 35757 4203 37569 188424;188425 191369;191370 191370 2 VGEVIVTK LTLNLEDVQPHDLGKVGEVIVTKDDAMLLK QPHDLGKVGEVIVTKDDAMLLKGKGDKAQI K V G T K D 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 3 0 0 8 0 843.50657 P10809 P10809 345 352 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0027586 105.14 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 2 3 1 1.3936 1.1914 13.246 11 Median 1.2009 1.15 17.112 2 0 Median 1.4196 1.1716 7.8434 3 0 Plateau 1.035 1.0378 5.8332 2 0 Median 1.4306 1.2341 0.81211 3 0 Median NaN NaN NaN 0 0 Median 1.8786 1.5776 NaN 1 0 Median 238400000 99582000 138810000 33546000 15432000 18113000 191340000 78011000 113330000 8463200 4230600 4232600 3476300 1381400 2094900 0 0 0 1575600 527190 1048400 35758 1947 37570 188426;188427;188428;188429;188430;188431;188432;188433;188434;188435;188436 191371;191372;191373;191374;191375;191376;191377;191378;191379 191377 9 VGEVIVTKDDAMLLK LTLNLEDVQPHDLGKVGEVIVTKDDAMLLK VGEVIVTKDDAMLLKGKGDKAQIEKRIQEI K V G L K G 1 0 0 2 0 0 1 1 0 1 2 2 1 0 0 0 1 0 0 3 0 0 15 1 1629.9011 P10809 P10809 345 359 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 6.821E-13 170.04 By MS/MS By MS/MS By MS/MS By matching By matching 4 4 2 1 1 1.2107 1.1744 15.594 12 Median 1.1377 1.0469 9.0694 4 0 Median 1.3694 1.2825 8.0063 4 0 Median 1.106 1.153 9.8955 2 0 Median 0.89983 0.83086 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6197 1.4435 NaN 1 0 Median 577640000 262140000 315510000 498850000 227980000 270870000 22688000 9030800 13657000 52095000 23756000 28340000 709490 368200 341300 0 0 0 3299900 999560 2300300 35759 1947 37571;37572 188437;188438;188439;188440;188441;188442;188443;188444;188445;188446;188447;188448 191380;191381;191382;191383;191384;191385;191386;191387;191388;191389;191390;191391;191392 191387 719 13 VGEVTYVELLMDAEGK FDVKWQSLKDLVKEKVGEVTYVELLMDAEG GEVTYVELLMDAEGKSRVSVVVEFKMEESM K V G G K S 1 0 0 1 0 0 3 2 0 0 2 1 1 0 0 0 1 0 1 3 0 0 16 0 1751.8652 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3 A0A087X0X3 95 110 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 1.0136E-09 101.47 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 2 3 1 2 1 1.0226 0.9728 16.653 10 Median 1.3099 1.2979 NaN 1 0 Median 1.0226 0.89278 8.1528 2 0 Median 0.95456 0.97976 16.383 3 0 Median 1.3077 1.1518 NaN 1 0 Median 0.86956 0.85892 6.3355 2 0 Median 1.3177 1.1338 NaN 1 0 Median 35569000 18431000 17137000 1764900 740210 1024700 4279100 2174000 2105100 3469800 1607900 1861800 111030 50587 60443 25819000 13800000 12019000 125360 58484 66872 35760 116 37573 188449;188450;188451;188452;188453;188454;188455;188456;188457;188458 191393;191394;191395;191396;191397;191398;191399;191400;191401 191400 9 VGFAEAAR FIGRYYTVFDRDNNRVGFAEAARL______ FDRDNNRVGFAEAARL______________ R V G A R L 3 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 819.4239 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;H7C1V0 A0A1B0GW44 397 404 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.0023833 116.54 By MS/MS By MS/MS By MS/MS 4 4 1 1.7494 1.5904 71.123 7 Median 1.7494 1.6603 48.739 3 1 Median 0.84944 0.68705 80.652 3 1 Median 2.2312 2.1401 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38729000 16554000 22175000 19026000 6513300 12513000 13852000 8158300 5693700 5851100 1882400 3968700 0 0 0 0 0 0 0 0 0 35761 324 37574 188459;188460;188461;188462;188463;188464;188465;188466;188467 191402;191403;191404;191405;191406;191407;191408;191409;191410;191411;191412 191405 11 VGFEVEK KMEEQGLADASLLKKVGFEVEKKGEKLILK ADASLLKKVGFEVEKKGEKLILKSTRDTPK K V G E K K 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 2 0 0 7 0 806.41742 Q9UBB4;B1AHE3 Q9UBB4 453 459 ATXN10 Ataxin-10 yes no 2 0.055177 50.632 By MS/MS 1 1.5676 1.3505 NaN 1 Median NaN NaN NaN 0 0 Median 1.5676 1.3505 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1725200 712260 1013000 0 0 0 1725200 712260 1013000 0 0 0 0 0 0 0 0 0 0 0 0 35762 4232 37575 188468 191413 191413 1 VGFLPSAGK MVAQFSTPSLPPTLKVGFLPSAGKEQSVLW LPPTLKVGFLPSAGKEQSVLWVSLEEAEPI K V G G K E 1 0 0 0 0 0 0 2 0 0 1 1 0 1 1 1 0 0 0 1 0 0 9 0 874.49125 C9JIF9;P13798 C9JIF9 435 443 APEH Acylamino-acid-releasing enzyme yes no 2 0.0040235 61.962 By MS/MS 2 0.99979 0.97432 6.9947 2 Median 0.99979 0.97432 6.9947 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9926600 5158100 4768500 9926600 5158100 4768500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35763 699 37576 188469;188470 191414 191414 1 VGFQYEGTYK YGSRGPTEADELMKRVGFQYEGTYKWVNPH ELMKRVGFQYEGTYKWVNPHKL________ R V G Y K W 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 1 0 2 1 0 0 10 0 1190.5608 P11413 P11413 499 508 G6PD Glucose-6-phosphate 1-dehydrogenase yes yes 2 0.00037764 110.87 By MS/MS By MS/MS 3 1 1.8294 1.7175 37.395 3 Plateau 1.5432 1.4354 25.376 2 1 Median 0.95645 0.81318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39311000 14991000 24320000 33328000 11920000 21408000 5983000 3070700 2912300 0 0 0 0 0 0 0 0 0 0 0 0 35764 1964 37577 188471;188472;188473;188474 191415;191416;191417;191418 191417 4 VGFQYQGIMQK LQAAAAHWQQHQQHRVGFQYQGIMQKHTQL QQHRVGFQYQGIMQKHTQLQQILQQYQQII R V G Q K H 0 0 0 0 0 3 0 2 0 1 0 1 1 1 0 0 0 0 1 1 0 0 11 0 1297.6489 P49750;F8VU51 P49750 398 408 YLPM1 YLP motif-containing protein 1 yes no 2 0.00019688 95.909 By MS/MS By matching By MS/MS By matching 1 2 1 1 1.4256 1.1922 15.599 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0823 1.1922 NaN 1 1 Median 1.6871 1.456 18.401 2 0 Median 1.064 1.1142 NaN 1 0 Median 1.4256 1.1833 NaN 1 0 Median 37508000 17625000 19883000 0 0 0 0 0 0 19857000 9136700 10720000 992920 393340 599580 15573000 7607300 7965400 1085500 487540 597930 35765 2395 37578 188475;188476;188477;188478;188479 191419;191420;191421 191420 3 VGFVGISNWALDPAK LEDGCIEDDPAPHKKVGFVGISNWALDPAK VGFVGISNWALDPAKMNRGIFVSRGSPNET K V G A K M 2 0 1 1 0 0 0 2 0 1 1 1 0 1 1 1 0 1 0 2 0 0 15 0 1572.83 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2928 2942 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.0003509 56.783 By MS/MS 1 0.65166 0.64869 NaN 1 Median 0.65166 0.64869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5589100 3053100 2536000 5589100 3053100 2536000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35766 189 37579 188480 191422;191423 191422 2 VGGDAHYETEDIDLR V G L R 1 1 0 3 0 0 2 2 1 1 1 0 0 0 0 0 1 0 1 1 0 0 15 0 1688.7642 REV__J3QLU9 yes no 3 0.059428 18.596 By MS/MS 1 7.6728 6.5736 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7.6728 6.5736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6144400 497150 5647300 0 0 0 0 0 0 0 0 0 6144400 497150 5647300 0 0 0 0 0 0 + 35767 4530 37580 188481 191424 191424 1 VGGFPNFLSNAFVSTAK VLGLVRVPLYTQKDRVGGFPNFLSNAFVST GFPNFLSNAFVSTAKCQLLFALKVLNMMPE R V G A K C 2 0 2 0 0 0 0 2 0 0 1 1 0 3 1 2 1 0 0 2 0 0 17 0 1754.8992 Q9BRJ7;K7EIN2 Q9BRJ7 154 170 NUDT16L1 Protein syndesmos yes no 2 2.8986E-06 70.622 By MS/MS 1 0.76417 0.64302 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76417 0.64302 NaN 1 1 Median 1431500 764830 666680 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1431500 764830 666680 35768 3796 37581 188482 191425 191425 1 VGGGGVGGGLLENANPLIYQR ______________________________ GGGLLENANPLIYQRSGERPVTAGEEDEQV M V G Q R S 1 1 2 0 0 1 1 7 0 1 3 0 0 0 1 0 0 0 1 2 0 0 21 0 2040.0752 Q9Y3D0;J3QLT9 Q9Y3D0 2 22 FAM96B Mitotic spindle-associated MMXD complex subunit MIP18 yes no 2;3 1.2589E-11 73.624 By MS/MS 2 0.64628 0.64661 14.158 2 Median 0.64628 0.64661 14.158 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6338500 3796000 2542500 6338500 3796000 2542500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35769 4421 37582 188483;188484 191426;191427 191427 2 VGGGWMALDEFLVK QLRLVRILRSTVMVRVGGGWMALDEFLVKN RVGGGWMALDEFLVKNDPCRVHHPGSKIKR R V G V K N 1 0 0 1 0 0 1 3 0 0 2 1 1 1 0 0 0 1 0 2 0 0 14 0 1520.7697 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;H0Y314;H0Y4F5;H0Y7I1;H0Y6T5;E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2;A0A494C073;A0A494C1U5;H0YC65 H3BPE1 7278 7291 MACF1;DST Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;Dystonin no no 2 0.0013725 48.981 By MS/MS By matching 1 1 1.0662 0.99193 9.5758 2 Median 1.0688 1.0614 NaN 1 0 Median 1.0635 0.92699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8081700 3828700 4253000 4518300 2183300 2335000 3563400 1645400 1918000 0 0 0 0 0 0 0 0 0 0 0 0 35770 1220;934 37583 188485;188486 191428 191428 1 VGGHAAEYGAEALER LSAADKGNVKAAWGKVGGHAAEYGAEALER VGGHAAEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 CON__P01966 CON__P01966 18 32 yes yes 2;3 9.4771E-14 124.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 4 9 0.088286 0.070967 176.22 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.0038663 0.0038963 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.10746 0.086414 118.1 5 5 Median 479220000 470900000 8322200 8028800 8028800 0 37437000 37437000 0 126410000 126270000 131910 2736300 2736300 0 58647000 58647000 0 245970000 237780000 8190300 + 35771 738 37584 188487;188488;188489;188490;188491;188492;188493;188494;188495;188496;188497;188498;188499;188500;188501;188502;188503;188504;188505 191429;191430;191431;191432;191433;191434;191435;191436;191437;191438;191439;191440;191441;191442;191443;191444;191445;191446;191447 191437 19 VGGIYTVLQTK ENAVLFEVAWEVANKVGGIYTVLQTKAKVT VANKVGGIYTVLQTKAKVTGDEWGDNYFLV K V G T K A 0 0 0 0 0 1 0 2 0 1 1 1 0 0 0 0 2 0 1 2 0 0 11 0 1177.6707 P13807 P13807 40 50 GYS1 Glycogen [starch] synthase, muscle yes yes 2 0.00056558 82.645 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35772 1997 37585 188506 191448 191448 1 VGGLLAFAK LRGDHTRCKTVLTGKVGGLLAFAKRRNCCI TVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ K V G A K R 2 0 0 0 0 0 0 2 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 874.52764 M0R2B7;P28340;A0A087WYJ2;M0QXE6;M0QXQ2;M0R3H8 M0R2B7 1025 1033 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.019639 39.663 By MS/MS By matching By matching 1 1 1 1.1713 1.0834 9.4106 3 Median 1.0927 1.0834 NaN 1 0 Median 1.217 1.0436 NaN 1 0 Median 1.1713 1.2475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4952100 2157300 2794800 2604300 1212000 1392300 1257600 522760 734820 1090300 422570 667690 0 0 0 0 0 0 0 0 0 35773 1436 37586 188507;188508;188509 191449;191450 191450 2 VGGNEVTELSTGSSGHDSSLFEDKNDHDKHK LYEEYVEKPLKLVLKVGGNEVTELSTGSSG DSSLFEDKNDHDKHKDRKRKKRKKGEKQIP K V G H K D 0 0 2 4 0 0 3 4 3 0 2 3 0 1 0 5 2 0 0 2 0 0 31 2 3325.5083 Q9NPI1 Q9NPI1 29 59 BRD7 Bromodomain-containing protein 7 yes yes 5 0.064994 8.2744 By MS/MS 1 0.63687 0.7363 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63687 0.7363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4755000 2464700 2290300 0 0 0 0 0 0 4755000 2464700 2290300 0 0 0 0 0 0 0 0 0 35774 4053 37587 188510 191451 191451 1 VGGNIEVLGFNAR LRNDKDKPLPPLLARVGGNIEVLGFNARQR ARVGGNIEVLGFNARQRKAFLNAIMRYGMP R V G A R Q 1 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 2 0 0 13 0 1344.715 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;Q8TDI0;K7EMY3 Q14839 1407 1419 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 7.1211E-16 191.48 By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 1 1.151 1.0984 15.791 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0704 1.1655 3.0178 3 0 Plateau 1.2511 1.0905 22.698 5 0 Median 1.0057 1.0195 NaN 1 0 Median 1.2378 1.0276 NaN 1 0 Median 174440000 83309000 91132000 0 0 0 0 0 0 115440000 55390000 60051000 13984000 6055700 7928000 41184000 20235000 20950000 3832500 1629100 2203400 35775 246;3471 37588 188511;188512;188513;188514;188515;188516;188517;188518;188519;188520 191452;191453;191454;191455;191456;191457;191458;191459;191460;191461;191462;191463;191464;191465;191466;191467 191458 16 VGGNIEVLGFNTR LRNEKDKPLPPLLARVGGNIEVLGFNTRQR ARVGGNIEVLGFNTRQRKAFLNAVMRWGMP R V G T R Q 0 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 1 0 0 2 0 0 13 0 1374.7256 Q12873 Q12873 1403 1415 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 7.5591E-16 147.74 By MS/MS 3 0.86914 0.95353 10.175 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86914 0.95353 10.175 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20205000 10752000 9452800 0 0 0 0 0 0 20205000 10752000 9452800 0 0 0 0 0 0 0 0 0 35776 2766 37589 188521;188522;188523 191468;191469;191470 191468 3 VGGSDEEASGIPSR EAHRKKSLEGMKKARVGGSDEEASGIPSRT RVGGSDEEASGIPSRTASLELGEDDDEQED R V G S R T 1 1 0 1 0 0 2 3 0 1 0 0 0 0 1 3 0 0 0 1 0 0 14 0 1359.6266 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55;A8MV53;H7C446 A0A0A6YYI3 356 369 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 1.6624E-05 128.01 By matching By matching By matching By MS/MS By MS/MS 1 1 2 2 1 0.9072 0.88718 14.489 7 Median 1.0283 1.0282 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63099 0.67703 NaN 1 0 Median 0.95262 0.81848 11.398 2 0 Median 0.83341 0.85743 8.2678 2 0 Median 1.1168 0.96177 NaN 1 0 Median 17489000 8569600 8919000 448390 251280 197110 0 0 0 1408400 785740 622680 1598400 686620 911730 11830000 5921400 5908500 2203600 924550 1279000 35777 205 37590 188524;188525;188526;188527;188528;188529;188530 191471;191472;191473 191472 3 VGGSSVDLHR APSRQDVYGPQPQVRVGGSSVDLHRFHPEP QPQVRVGGSSVDLHRFHPEPYGLEDDQRSM R V G H R F 0 1 0 1 0 0 0 2 1 0 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1025.5254 C9JZR2;O60716;E9PRE2 C9JZR2 265 274 CTNND1 Catenin delta-1 yes no 2 0.0057065 50.04 By MS/MS 1 1.2666 1.1468 NaN 1 Median NaN NaN NaN 0 0 Median 1.2666 1.1468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 922600 465440 457170 0 0 0 922600 465440 457170 0 0 0 0 0 0 0 0 0 0 0 0 35778 732 37591 188531 191474;191475 191475 2 VGGTKPAGGDFGEVLNSAANASATTTEPLPEKTQESL TFKSFEEKVENLKSKVGGTKPAGGDFGEVL ATTTEPLPEKTQESL_______________ K V G S L - 5 0 2 1 0 1 4 5 0 0 3 2 0 1 3 3 5 0 0 2 0 0 37 2 3643.7853 P55327;E5RK35 P55327 188 224 TPD52 Tumor protein D52 yes no 3 3.8126E-10 44.75 By MS/MS 1 0.53249 0.54162 NaN 1 Median 0.53249 0.54162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7912200 4637800 3274400 7912200 4637800 3274400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35779 2499 37592 188532 191476;191477 191476 2 VGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPR VPQQIEVARQLIDEKVGGTNLGAPGAFGQS SQPPAPPHQNTFPPRSSGCFPNMAAKVNGN K V G P R S 3 1 2 0 0 3 0 5 1 0 1 0 0 3 8 2 2 0 0 1 0 0 32 0 3227.5901 Q96I24 Q96I24 425 456 FUBP3 Far upstream element-binding protein 3 yes yes 4 0.018959 13.943 By MS/MS 1 0.17299 0.18397 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.17299 0.18397 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2972600 2312400 660130 0 0 0 0 0 0 2972600 2312400 660130 0 0 0 0 0 0 0 0 0 35780 3673 37593 188533 191478 191478 1 VGGTSDVEVNEK NERLAKLSDGVAVLKVGGTSDVEVNEKKDR VLKVGGTSDVEVNEKKDRVTDALNATRAAV K V G E K K 0 0 1 1 0 0 2 2 0 0 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1232.5885 P10809 P10809 406 417 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 1.3083E-52 229.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 7 1 3 2 4 1.3155 1.1376 32.918 24 Median 1.0709 0.98831 24.693 7 0 Median 1.3624 1.1534 15.065 7 0 Median 1.0855 1.0501 NaN 1 0 Median 1.4683 1.2412 26.23 3 0 Median 2.4904 2.4147 31.882 2 0 Median 1.557 1.2932 32.053 4 0 Median 552540000 234430000 318110000 175790000 79688000 96106000 308350000 126460000 181890000 26223000 12194000 14029000 22010000 8576100 13434000 8054200 2768700 5285500 12110000 4737000 7373100 35781 1947 37594 188534;188535;188536;188537;188538;188539;188540;188541;188542;188543;188544;188545;188546;188547;188548;188549;188550;188551;188552;188553;188554;188555;188556;188557 191479;191480;191481;191482;191483;191484;191485;191486;191487;191488;191489;191490;191491;191492;191493;191494;191495;191496;191497;191498;191499;191500;191501;191502;191503;191504;191505;191506;191507;191508;191509;191510;191511;191512;191513;191514;191515;191516;191517;191518 191498 40 VGGTSDVEVNEKK NERLAKLSDGVAVLKVGGTSDVEVNEKKDR LKVGGTSDVEVNEKKDRVTDALNATRAAVE K V G K K D 0 0 1 1 0 0 2 2 0 0 0 2 0 0 0 1 1 0 0 3 0 0 13 1 1360.6834 P10809 P10809 406 418 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 3.6893E-07 130.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 3 2 1 1.2106 1.1908 21.582 20 Median 1.0624 1.047 7.5167 8 0 Median 1.365 1.2565 6.9077 7 0 Median 1.1472 1.2057 1.5953 2 0 Median 1.53 1.4128 2.8825 2 0 Median 2.345 2.503 NaN 1 1 Median NaN NaN NaN 0 0 Median 93042000 42160000 50882000 39784000 18060000 21723000 47207000 21539000 25667000 4084600 1854200 2230300 584860 228370 356490 1382200 477920 904260 0 0 0 35782 1947 37595 188558;188559;188560;188561;188562;188563;188564;188565;188566;188567;188568;188569;188570;188571;188572;188573;188574;188575;188576;188577;188578 191519;191520;191521;191522;191523;191524;191525;191526;191527;191528;191529;191530;191531;191532;191533 191528 15 VGGTSDVEVNEKKDR NERLAKLSDGVAVLKVGGTSDVEVNEKKDR VGGTSDVEVNEKKDRVTDALNATRAAVEEG K V G D R V 0 1 1 2 0 0 2 2 0 0 0 2 0 0 0 1 1 0 0 3 0 0 15 2 1631.8115 P10809 P10809 406 420 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3;4 9.6259E-07 91.207 By MS/MS By MS/MS By matching By MS/MS By MS/MS 15 3 2 5 3 1.1946 1.2962 33.089 28 Median 1.1528 1.2479 16.868 15 0 Median 1.2987 1.1378 10.449 3 0 Median 1.1122 1.3677 3.5321 2 0 Median NaN NaN NaN 0 0 Median 2.0281 2.32 28.766 5 0 Median 1.7617 1.6411 3.7264 3 0 Median 178210000 78499000 99708000 163040000 73057000 89988000 2849100 1235900 1613200 369990 172880 197100 0 0 0 7395500 2492100 4903400 4548600 1541500 3007100 35783 1947 37596 188579;188580;188581;188582;188583;188584;188585;188586;188587;188588;188589;188590;188591;188592;188593;188594;188595;188596;188597;188598;188599;188600;188601;188602;188603;188604;188605;188606 191534;191535;191536;191537;191538;191539;191540;191541;191542;191543;191544;191545;191546;191547;191548;191549;191550;191551;191552 191536 19 VGGVGPADTHEPLRPEAEPGELER WAEFRPIQQALAQERVGGVGPADTHEPLRP HEPLRPEAEPGELERERARRREERRKRFGM R V G E R E 2 2 0 1 0 0 5 4 1 0 2 0 0 0 4 0 1 0 0 2 0 0 24 1 2511.2354 A0A494BZV2;Q6WCQ1;J3KSW8;H0Y2S9 A0A494BZV2 678 701 MPRIP Myosin phosphatase Rho-interacting protein yes no 3;4 4.0538E-20 89.946 By MS/MS By MS/MS 2 2 0.46803 0.5107 40.813 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.30222 0.36756 0.022098 2 0 Median 0.759 0.74305 6.5435 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58312000 41449000 16863000 0 0 0 0 0 0 49158000 36398000 12760000 9154000 5050900 4103100 0 0 0 0 0 0 35784 453 37597 188607;188608;188609;188610 191553;191554;191555;191556 191554 4 VGGVQSLGGTGALR RLALGDDSPALKEKRVGGVQSLGGTGALRI RVGGVQSLGGTGALRIGADFLARWYNGTNN R V G L R I 1 1 0 0 0 1 0 5 0 0 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1270.6993 P17174 P17174 101 114 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 4.7388E-08 157.66 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.1398 1.1248 47.9 7 Median 1.1614 1.1324 14.566 2 0 Median 1.3207 1.137 1.5255 2 0 Median 0.56166 0.61977 92.911 2 0 Median 1.1398 0.99506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 160660000 72282000 88376000 98842000 44127000 54714000 39930000 16304000 23625000 19728000 10816000 8911900 2157500 1033800 1123700 0 0 0 0 0 0 35785 2038 37598 188611;188612;188613;188614;188615;188616;188617 191557;191558;191559;191560;191561;191562;191563;191564 191559 8 VGGYILGEFGNLIAGDPR FEALQAPACHENMVKVGGYILGEFGNLIAG YILGEFGNLIAGDPRSSPPVQFSLLHSKFH K V G P R S 1 1 1 1 0 0 1 5 0 2 2 0 0 1 1 0 0 0 1 1 0 0 18 0 1846.9577 O94973;A0A0G2JS82;A0A0G2JQM1;O95782 O95782 499 516 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 0.041854 21.631 By MS/MS By matching 2 1 0.91493 0.89144 23.735 3 Median 0.74353 0.73951 26.425 2 0 Median 1.0691 0.95288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456100 2267200 2188900 4362900 2225100 2137800 93211 42114 51097 0 0 0 0 0 0 0 0 0 0 0 0 35786 1793;1741 37599 188618;188619;188620 191565 191565 1 VGHFDPVTR GITYDRKDIEEHLQRVGHFDPVTRSPLTQE EEHLQRVGHFDPVTRSPLTQEQLIPNLAMK R V G T R S 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 2 0 0 9 0 1026.5247 Q9UNE7;H3BTA3 Q9UNE7 264 272 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.0030194 67.993 By MS/MS By MS/MS By MS/MS 1 1 2 0.80275 0.70847 18.321 4 Median 0.74871 0.70093 NaN 1 0 Median 0.86069 0.71608 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73957 0.63091 29.501 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29160000 15134000 14026000 15525000 8121700 7403600 6489100 3333600 3155500 0 0 0 7145100 3678500 3466600 0 0 0 0 0 0 35787 4342 37600 188621;188622;188623;188624 191566;191567;191568;191569;191570;191571 191566 6 VGHLSEPLMNR TEIEDSHTLVTVMMKVGHLSEPLMNRLEDK VMMKVGHLSEPLMNRLEDKCLELVEHFGPN K V G N R L 0 1 1 0 0 0 1 1 1 0 2 0 1 0 1 1 0 0 0 1 0 0 11 0 1251.6394 Q969Z0;C9J7P5;C9IZN7 Q969Z0 231 241 TBRG4 Protein TBRG4 yes no 2;3 1.2857E-06 113.71 By MS/MS By MS/MS 2 2 1.4489 1.047 12.219 3 Plateau 1.0865 1.047 NaN 1 0 Median 1.3395 1.1591 15.152 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24085000 10465000 13620000 6534500 2860700 3673800 17551000 7604400 9946100 0 0 0 0 0 0 0 0 0 0 0 0 35788 3591 37601 188625;188626;188627;188628 191572;191573;191574;191575 191572 4 VGHSELVGEIIR TACDMAGAAMYELVRVGHSELVGEIIRLEG LVRVGHSELVGEIIRLEGDMATIQVYEETS R V G I R L 0 1 0 0 0 0 2 2 1 2 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1307.7197 P38606;C9JA17;C9JVW8 P38606 45 56 ATP6V1A V-type proton ATPase catalytic subunit A yes no 2;3 2.5633E-05 91.937 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.2738 1.1496 70.266 8 Median 1.7863 1.9325 77.532 2 0 Median 1.4013 1.212 3.4036 2 0 Median 0.49135 0.52106 98.806 2 0 Median 1.4464 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97441 0.7767 NaN 1 0 Median 91139000 42146000 48993000 34530000 16373000 18157000 25158000 10779000 14380000 13706000 7677300 6028600 1268700 547570 721170 0 0 0 16476000 6769100 9706600 35789 2276 37602 188629;188630;188631;188632;188633;188634;188635;188636 191576;191577;191578;191579;191580;191581;191582;191583;191584 191577 9 VGHSIRHPDVEVDGFSELR DGKVPHWYHFSCFWKVGHSIRHPDVEVDGF IRHPDVEVDGFSELRWDDQQKVKKTAEAGG K V G L R W 0 2 0 2 0 0 2 2 2 1 1 0 0 1 1 2 0 0 0 3 0 0 19 1 2148.0712 P09874;Q5VX84;Q5VX85 P09874 60 78 PARP1 Poly [ADP-ribose] polymerase 1 yes no 3;4 1.1657E-25 178.75 By MS/MS 2 0.87195 1.0605 2.2896 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87195 1.0605 2.2896 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66887000 34846000 32041000 0 0 0 0 0 0 66887000 34846000 32041000 0 0 0 0 0 0 0 0 0 35790 1922 37603 188637;188638 191585;191586;191587 191586 3 VGHSTAHDEIIPMSIR LNGHVVVKDLDIFDRVGHSTAHDEIIPMSI GHSTAHDEIIPMSIRKGKLSVQGEVSTFTG R V G I R K 1 1 0 1 0 0 1 1 2 3 0 0 1 0 1 2 1 0 0 1 0 0 16 0 1761.8832 F5H1S8;Q14165;H0YG07 F5H1S8 76 91 MLEC Malectin yes no 3 3.5654E-05 51.695 By MS/MS By MS/MS 1 2 0.54212 0.56584 36.838 3 Median NaN NaN NaN 0 0 Median 0.98589 0.82091 NaN 1 0 Median 0.46665 0.47154 25.783 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23662000 14578000 9084400 0 0 0 5803000 2470000 3333000 17859000 12108000 5751300 0 0 0 0 0 0 0 0 0 35791 1021 37604 188639;188640;188641 191588;191589 191589 2 VGIALKPFLPQLQTTFTK VKAALLETLSLLLAKVGIALKPFLPQLQTT ALKPFLPQLQTTFTKALQDSNRGVRLKAAD K V G T K A 1 0 0 0 0 2 0 1 0 1 3 2 0 2 2 0 3 0 0 1 0 0 18 1 2001.1663 Q92616 Q92616 2337 2354 GCN1L1 Translational activator GCN1 yes yes 3 0.019088 19.036 By MS/MS By MS/MS By matching 1 3 1 0.86364 0.87827 21.472 5 Median 0.86364 0.87827 NaN 1 0 Median 1.0021 0.9583 23.448 3 0 Plateau 0.91466 1.0488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12298000 6133000 6165200 2133600 1085100 1048400 9498800 4687200 4811600 665900 360680 305220 0 0 0 0 0 0 0 0 0 35792 3544 37605 188642;188643;188644;188645;188646 191590;191591 191591 2 VGIDTPDIDIHGPEGK EGDLKGPKVDVKGPKVGIDTPDIDIHGPEG GIDTPDIDIHGPEGKLKGPKFKMPDLHLKA K V G G K L 0 0 0 3 0 0 1 3 1 3 0 1 0 0 2 0 1 0 0 1 0 0 16 0 1661.8261 Q09666 Q09666 4560 4575 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 3.686E-05 73.466 By MS/MS By matching By MS/MS By MS/MS 2 1 2 4 0.7967 0.77642 17.849 9 Median 0.72751 0.7301 11.988 2 0 Median 0.7967 0.69927 NaN 1 0 Median 0.8117 0.86853 19.338 2 0 Median 0.87685 0.81396 22.876 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 103110000 58452000 44660000 55918000 34779000 21138000 1536100 797990 738150 41709000 20769000 20940000 3949500 2106000 1843500 0 0 0 0 0 0 35793 2749 37606 188647;188648;188649;188650;188651;188652;188653;188654;188655 191592;191593;191594;191595;191596;191597;191598;191599;191600;191601;191602;191603 191592 12 VGIFTGAR GDAQGMNAAVRAVVRVGIFTGARVFFVHEG AVRAVVRVGIFTGARVFFVHEGYQGLVDGG R V G A R V 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 819.46029 A0A2R8Y891;P08237;F8VZI0;F8VX13;F8VZQ1;F8VSF7;F8VTQ3;F8VW30;F8VUB8;F8VYK8;F8VVE3 A0A2R8Y891 143 150 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 2 0.0035088 91.906 By MS/MS By MS/MS 1 1 1.3291 1.2235 12.702 2 Median 1.16 1.1184 NaN 1 0 Median 1.5228 1.3385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5518700 2653900 2864800 4036600 2031700 2004800 1482200 622230 859930 0 0 0 0 0 0 0 0 0 0 0 0 35794 390 37607 188656;188657 191604;191605;191606 191604 3 VGIIAWHPTAR PLTEPVVVLEGHTKRVGIIAWHPTARNVLL HTKRVGIIAWHPTARNVLLSAGCDNVVLIW R V G A R N 2 1 0 0 0 0 0 1 1 2 0 0 0 0 1 0 1 1 0 1 0 0 11 0 1219.6826 Q9BR76;A0A087WW53;F5H390 Q9BR76 135 145 CORO1B Coronin-1B;Coronin yes no 2;3 0.00011752 69.786 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 1 0.95373 0.95836 11.301 7 Median 0.96801 0.96796 9.4989 2 0 Median 0.93271 0.79178 NaN 1 0 Median 0.95373 0.95836 13.71 3 0 Median 1.1126 0.95946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26694000 13823000 12871000 6554900 3420400 3134500 4568100 2170200 2397800 14114000 7572700 6541600 1456300 659640 796640 0 0 0 0 0 0 35795 3792 37608 188658;188659;188660;188661;188662;188663;188664 191607;191608;191609;191610;191611;191612;191613;191614 191608 8 VGILLDEASGVNK KFDLLVDANDVILERVGILLDEASGVNKNQ ERVGILLDEASGVNKNQQPVLPAGLQVPKT R V G N K N 1 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1313.7191 Q01780 Q01780 124 136 EXOSC10 Exosome component 10 yes yes 2 1.31E-06 132.88 By MS/MS By MS/MS By MS/MS 1 1 1 1.0116 1.0928 11.267 3 Plateau 0.91261 0.889 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0116 1.0928 NaN 1 0 Median 1.0596 0.9115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36753000 17197000 19556000 5638300 2897500 2740800 0 0 0 27304000 12537000 14767000 3810900 1762700 2048200 0 0 0 0 0 0 35796 2691 37609 188665;188666;188667 191615;191616;191617;191618 191618 4 VGINYQPPTVVPGGDLAK KRSIQFVDWCPTGFKVGINYQPPTVVPGGD NYQPPTVVPGGDLAKVQRAVCMLSNTTAIA K V G A K V 1 0 1 1 0 1 0 3 0 1 1 1 0 0 3 0 1 0 1 3 0 0 18 0 1823.9781 Q9BQE3;F5H5D3;A0A1W2PQM2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;V9GZ17 P68363 353 370 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA8 Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 7.6881E-07 82.543 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 14 11 10 9 6 5 0.75126 0.67668 21.611 55 Median 0.66046 0.61229 8.3338 14 1 Median 0.75616 0.65019 8.6199 11 0 Median 0.69922 0.69944 11.429 10 0 Median 0.79714 0.68908 8.5913 9 0 Median 1.14 1.1437 12.526 6 3 Median 0.83639 0.68354 1.5716 5 0 Median 3760800000 2201100000 1559700000 2676100000 1620600000 1055500000 262590000 143830000 118760000 527460000 298020000 229440000 68428000 36968000 31460000 204270000 89982000 114290000 22018000 11768000 10250000 35797 2633;3212;1034 37610 188668;188669;188670;188671;188672;188673;188674;188675;188676;188677;188678;188679;188680;188681;188682;188683;188684;188685;188686;188687;188688;188689;188690;188691;188692;188693;188694;188695;188696;188697;188698;188699;188700;188701;188702;188703;188704;188705;188706;188707;188708;188709;188710;188711;188712;188713;188714;188715;188716;188717;188718;188719;188720;188721;188722 191619;191620;191621;191622;191623;191624;191625;191626;191627;191628;191629;191630;191631;191632;191633;191634;191635;191636;191637;191638;191639;191640;191641;191642;191643;191644;191645;191646;191647;191648;191649;191650;191651;191652;191653;191654;191655;191656;191657;191658;191659;191660;191661;191662;191663;191664;191665;191666;191667;191668;191669;191670;191671;191672;191673;191674;191675;191676;191677;191678;191679;191680;191681;191682 191629 64 VGINYQPPTVVPGGDLAKVQR KRSIQFVDWCPTGFKVGINYQPPTVVPGGD PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW K V G Q R A 1 1 1 1 0 2 0 3 0 1 1 1 0 0 3 0 1 0 1 4 0 0 21 1 2207.2063 Q9BQE3;F5H5D3;A0A1W2PQM2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;V9GZ17 P68363 353 373 TUBA1C;TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA8 Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 3 6.3811E-09 55.127 By MS/MS By matching By matching 1 2 1 0.73211 0.6477 30.19 4 Median 0.84064 0.83809 NaN 1 0 Median 0.697 0.62617 38.522 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6376 0.51022 NaN 1 0 Median 12292000 6314700 5977400 10464000 5258800 5205100 1666800 963500 703310 0 0 0 0 0 0 0 0 0 161410 92396 69011 35798 2633;3212;1034 37611 188723;188724;188725;188726 191683;191684 191684 2 VGIPVTDENGNR ANCINIPLMRQRELKVGIPVTDENGNRLGE ELKVGIPVTDENGNRLGESANAAKQAITQV K V G N R L 0 1 2 1 0 0 1 2 0 1 0 0 0 0 1 0 1 0 0 2 0 0 12 0 1269.6313 Q9H9B4 Q9H9B4 203 214 SFXN1 Sideroflexin-1 yes yes 2 8.1954E-05 92.838 By MS/MS By MS/MS By matching By matching By matching By matching 2 1 1 2 3 1 1.2273 1.1346 27.098 10 Median 0.98212 0.94803 7.7082 2 0 Median 1.1875 0.98751 NaN 1 0 Median 1.4392 1.3986 NaN 1 0 Median 1.2995 1.1635 31.859 2 0 Median 1.5419 1.7435 18.932 3 0 Median 1.0561 0.93644 NaN 1 0 Median 168990000 77039000 91952000 39651000 20235000 19416000 16349000 6558000 9790600 1952100 755050 1197100 5423700 2543800 2880000 58200000 24772000 33428000 47415000 22175000 25240000 35799 3998 37612 188727;188728;188729;188730;188731;188732;188733;188734;188735;188736 191685;191686;191687;191688;191689 191686 5 VGIQELGPR IFFRFHRYIFRSEKKVGIQELGPRFTLKLR FRSEKKVGIQELGPRFTLKLRSLQKGTFDS K V G P R F 0 1 0 0 0 1 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 967.54508 Q9H9Y2 Q9H9Y2 303 311 RPF1 Ribosome production factor 1 yes yes 2 0.0023235 72.789 By MS/MS By MS/MS 1 1 1.0295 0.98029 14.987 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0362 1.0899 NaN 1 0 Median 1.0229 0.88172 NaN 1 0 Median 6736600 3185500 3551100 0 0 0 0 0 0 0 0 0 0 0 0 4223200 2210900 2012300 2513400 974550 1538800 35800 4003 37613 188737;188738 191690;191691;191692 191691 3 VGIQQGLLSQSTR GRLNARPGVGGVRSRVGIQQGLLSQSTRTA SRVGIQQGLLSQSTRTATFQQRFDARQKIG R V G T R T 0 1 0 0 0 3 0 2 0 1 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1385.7627 F6VRR5;Q9BY77;F8WCX5;Q6R954;Q8WUT1;F8WEE2 F6VRR5 34 46 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 no no 2 3.6644E-07 167.12 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 5 6 2 1 1.2571 1.0772 26.856 15 Median NaN NaN NaN 0 0 Median 1.3826 1.1183 NaN 1 0 Median 1.0982 1.0474 41.666 5 2 Median 1.312 1.0727 19.983 6 0 Median 1.248 1.242 9.5534 2 1 Median 1.0546 0.85464 NaN 1 0 Median 455930000 212230000 243700000 0 0 0 447780 184700 263090 273990000 130000000 143990000 157120000 71240000 85876000 23663000 10506000 13157000 720190 301880 418310 35801 1051;3496 37614 188739;188740;188741;188742;188743;188744;188745;188746;188747;188748;188749;188750;188751;188752;188753 191693;191694;191695;191696;191697;191698;191699;191700;191701;191702;191703;191704;191705;191706;191707;191708;191709;191710;191711 191694 19 VGIVAWHPTAR SLTEPVVILEGHSKRVGIVAWHPTARNVLL HSKRVGIVAWHPTARNVLLSAGCDNAIIIW R V G A R N 2 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 2 0 0 11 0 1205.6669 Q9ULV4;B4E3S0;F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;F8VV53 Q9ULV4 133 143 CORO1C Coronin-1C;Coronin yes no 2;3 0.0011096 82.749 By MS/MS By MS/MS By MS/MS 2 5 6 0.90082 0.78056 33.713 13 Median NaN NaN NaN 0 0 Median 0.77473 0.65495 24.813 2 1 Median 0.77155 0.74219 36.708 5 1 Median 1.0524 0.91536 36.444 6 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 393890000 223280000 170610000 0 0 0 13640000 6621500 7018500 150680000 88688000 61991000 229570000 127970000 101600000 0 0 0 0 0 0 35802 4329 37615 188754;188755;188756;188757;188758;188759;188760;188761;188762;188763;188764;188765;188766 191712;191713;191714;191715;191716;191717;191718;191719;191720;191721;191722;191723;191724 191716 13 VGIYSPHTAYDAAPQGVNNWLAK NTWKERLVIRALENRVGIYSPHTAYDAAPQ AYDAAPQGVNNWLAKGLGACTSRPIHPSKA R V G A K G 4 0 2 1 0 1 0 2 1 1 1 1 0 0 2 1 1 1 2 2 0 0 23 0 2471.2234 Q9GZT8;E7EXA3;Q6X734;C9JN42;B8ZZI0 Q9GZT8 121 143 NIF3L1 NIF3-like protein 1 yes no 3 1.1747E-12 61.767 By MS/MS By matching By matching 2 2 1 0.78867 0.72669 20.077 5 Median 0.71841 0.68289 8.7899 2 0 Median 0.83454 0.72446 12.121 2 0 Median 1.097 1.0612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32643000 18165000 14479000 29924000 16752000 13171000 1141900 627760 514160 1577700 784500 793160 0 0 0 0 0 0 0 0 0 35803 3916 37616 188767;188768;188769;188770;188771 191725;191726 191726 2 VGKDHTLEDEDVIQIVK YALVWGLSVKHNPQKVGKDHTLEDEDVIQI KDHTLEDEDVIQIVKK______________ K V G V K K 0 0 0 3 0 1 2 1 1 2 1 2 0 0 0 0 1 0 0 3 0 0 17 1 1937.0106 Q9Y295 Q9Y295 350 366 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 3;4 0.0008714 34.909 By MS/MS 2 1.0058 1.096 8.6659 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0058 1.096 8.6659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21035000 10036000 10999000 0 0 0 0 0 0 21035000 10036000 10999000 0 0 0 0 0 0 0 0 0 35804 4382 37617 188772;188773 191727;191728 191727 2 VGKEDSSSAEFLEK PPPPEKSLIGMTKVKVGKEDSSSAEFLEKR KVGKEDSSSAEFLEKRRAALERYLQRIVNH K V G E K R 1 0 0 1 0 0 3 1 0 0 1 2 0 1 0 3 0 0 0 1 0 0 14 1 1524.7308 Q13596;H0YK42 Q13596 224 237 SNX1 Sorting nexin-1 yes no 3 0.022193 33.842 By MS/MS By MS/MS 1 1 1.1562 1.0908 NaN 1 Median 1.1562 1.0908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5711300 2842300 2869000 5711300 2842300 2869000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35805 2829 37618 188774;188775 191729;191730 191729 2 VGKEDSSSTEFVEK PPAPEKSIVGMTKVKVGKEDSSSTEFVEKR KVGKEDSSSTEFVEKRRAALERYLQRTVKH K V G E K R 0 0 0 1 0 0 3 1 0 0 0 2 0 1 0 3 1 0 0 2 0 0 14 1 1540.7257 O60749;D6RC15 O60749 221 234 SNX2 Sorting nexin-2 yes no 3 0.00046477 48.527 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0635 1.0002 22.617 4 Median 1.1243 1.0618 NaN 1 0 Median 1.006 0.94226 NaN 1 0 Median 1.242 1.3997 NaN 1 0 Median 0.89068 0.82241 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13318000 6673700 6644000 4990000 2458000 2532000 3441700 1871700 1570000 4558300 2177600 2380700 327750 166440 161310 0 0 0 0 0 0 35806 1629 37619 188776;188777;188778;188779 191731;191732;191733;191734 191731 4 VGKETVQTTEDQILK APVAAVQAAVSNLVRVGKETVQTTEDQILK VGKETVQTTEDQILKRDMPPAFIKVENACT R V G L K R 0 0 0 1 0 2 2 1 0 1 1 2 0 0 0 0 3 0 0 2 0 0 15 1 1687.8992 P18206 P18206 57 71 VCL Vinculin yes yes 3 0.00013289 59.68 By MS/MS 1 0.88381 0.92691 NaN 1 Median 0.88381 0.92691 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9079300 4484700 4594600 9079300 4484700 4594600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35807 2057 37620 188780 191735 191735 1 VGKETVQTTEDQILKR APVAAVQAAVSNLVRVGKETVQTTEDQILK GKETVQTTEDQILKRDMPPAFIKVENACTK R V G K R D 0 1 0 1 0 2 2 1 0 1 1 2 0 0 0 0 3 0 0 2 0 0 16 2 1844.0003 P18206 P18206 57 72 VCL Vinculin yes yes 3;4 4.0596E-10 98.676 By MS/MS 2 1.076 1.2231 0.46777 2 Median 1.076 1.2231 0.46777 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32723000 16254000 16470000 32723000 16254000 16470000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35808 2057 37621 188781;188782 191736;191737;191738;191739 191739 4 VGKFPFAANSR GKSEEQLKEEGIEYKVGKFPFAANSRAKTN IEYKVGKFPFAANSRAKTNADTDGMVKILG K V G S R A 2 1 1 0 0 0 0 1 0 0 0 1 0 2 1 1 0 0 0 1 0 0 11 1 1192.6353 E9PEX6;P09622 E9PEX6 395 405 DLD Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial yes no 3 0.0036421 56.087 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2412700 0 2412700 2412700 0 2412700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35809 915 37622 188783 191740 191740 1 VGKGEPGAAPLSAPAFSLVFPFLK KRAVMLLHTHTITSRVGKGEPGAAPLSAPA PLSAPAFSLVFPFLKMVLTEMPHHSEEEEE R V G L K M 4 0 0 0 0 0 1 3 0 0 3 2 0 3 4 2 0 0 0 2 0 0 24 1 2399.3253 Q92616 Q92616 963 986 GCN1L1 Translational activator GCN1 yes yes 3 0.072136 6.7984 By MS/MS By MS/MS 1 1 0.5821 0.62146 14.624 2 Median 0.5637 0.56041 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6011 0.68917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4776100 2984000 1792100 3788400 2381700 1406700 0 0 0 987730 602240 385480 0 0 0 0 0 0 0 0 0 35810 3544 37623 188784;188785 191741;191742 191741 2 VGKVEHGSVALPAIMR VSPKKSTVLQQQYNRVGKVEHGSVALPAIM GKVEHGSVALPAIMRSGASGPENFQVGSMP R V G M R S 2 1 0 0 0 0 1 2 1 1 1 1 1 0 1 1 0 0 0 3 0 0 16 1 1662.9239 Q9Y490 Q9Y490 439 454 TLN1 Talin-1 yes yes 3 1.1333E-06 74.296 By MS/MS 1 0.80152 0.80376 NaN 1 Median 0.80152 0.80376 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15522000 7919100 7603300 15522000 7919100 7603300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35811 4441 37624 188786 191743 191743 1 VGLADLHPDVFATAPR VQAWVESLRGFEQERVGLADLHPDVFATAP GLADLHPDVFATAPRLDILHQVAMWQKNFK R V G P R L 3 1 0 2 0 0 0 1 1 0 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1677.8839 K7ES61;Q9BYD3;K7ELQ0;X6RAY8;K7EKI4;K7ELF1 K7ES61 77 92 MRPL4 39S ribosomal protein L4, mitochondrial yes no 3 0.025254 16.88 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.79923 0.72632 31.514 6 Median 0.6548 0.61454 NaN 1 0 Median 0.80181 0.6696 NaN 1 0 Median 0.79665 0.78786 NaN 1 0 Median 1.2436 1.0479 NaN 1 0 Median 0.63704 0.66044 NaN 1 0 Median 1.5786 1.3704 NaN 1 0 Median 15464000 8536500 6927500 6209700 3617700 2592000 3882500 2016300 1866200 4038200 2258200 1780000 149760 65294 84470 529050 347810 181240 654780 231240 423540 35812 1401 37625 188787;188788;188789;188790;188791;188792 191744;191745 191744 2 VGLIHMLTHLAEALHQAR GFVVEVWNQLLSQKRVGLIHMLTHLAEALH IHMLTHLAEALHQARLLALLVIPPAITPGT R V G A R L 3 1 0 0 0 1 1 1 3 1 4 0 1 0 0 0 1 0 0 1 0 0 18 0 2009.0993 Q9BWS9 Q9BWS9 203 220 CHID1 Chitinase domain-containing protein 1 yes yes 3 3.1662E-06 52.172 By MS/MS 1 1.2327 1.0736 NaN 1 Median NaN NaN NaN 0 0 Median 1.2327 1.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6094100 2723800 3370300 0 0 0 6094100 2723800 3370300 0 0 0 0 0 0 0 0 0 0 0 0 35813 3874 37626 188793 191746;191747 191747 2 VGLKAPGIIPR AIDGKGPIGSKTRRRVGLKAPGIIPRISVR TRRRVGLKAPGIIPRISVREPMQTGIKAVD R V G P R I 1 1 0 0 0 0 0 2 0 2 1 1 0 0 2 0 0 0 0 1 0 0 11 1 1119.7128 P25705;K7EK77;K7ENJ4;K7ERX7;K7EJP1 P25705 172 182 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 0.00091444 75.761 By MS/MS 1 0.74807 0.74639 NaN 1 Median 0.74807 0.74639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7368800 4227500 3141300 7368800 4227500 3141300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35814 2135 37627 188794 191748 191748 1 VGLLLEYEAQK ANEKAPVEGIGQPEKVGLLLEYEAQKLSLV QPEKVGLLLEYEAQKLSLVDVSQVSVVHTL K V G Q K L 1 0 0 0 0 1 2 1 0 0 3 1 0 0 0 0 0 0 1 1 0 0 11 0 1261.6918 Q8WW59 Q8WW59 151 161 SPRYD4 SPRY domain-containing protein 4 yes yes 2 0.00042523 69.954 By MS/MS By MS/MS By matching 1 1 1 0.87011 0.87261 11.61 3 Median 0.87011 0.81166 NaN 1 0 Median 1.1719 1.0188 NaN 1 0 Median 0.85215 0.87261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12324000 6864900 5459100 10672000 6244300 4427400 1148400 443060 705320 504010 177590 326420 0 0 0 0 0 0 0 0 0 35815 3506 37628 188795;188796;188797 191749;191750 191749 2 VGLNFSPGQSFPASQAHLR GDSARYEIEHCLANKVGLNFSPGQSFPASQ FSPGQSFPASQAHLRVTASPQSLCALRAVD K V G L R V 2 1 1 0 0 2 0 2 1 0 2 0 0 2 2 3 0 0 0 1 0 0 19 0 2012.0228 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 568 586 yes yes 3 2.2614E-07 65.808 By MS/MS 2 0.23527 0.22973 85.746 2 Median 0.23527 0.22973 85.746 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21121000 18291000 2829400 21121000 18291000 2829400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 35816 734 37629 188798;188799 191751;191752;191753 191752 3 VGLPPLEK DSDWFAENYMGRKTKVGLPPLEKFNNWGGS YMGRKTKVGLPPLEKFNNWGGSLSLGHPFG K V G E K F 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 8 0 851.51165 P55084;F5GZQ3;B5MD38 P55084 409 416 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes no 2 0.023904 43.808 By MS/MS By matching By matching By matching 1 1 1 1 0.84849 0.78376 20.225 4 Median 0.71201 0.67628 NaN 1 0 Median 1.1219 0.96365 NaN 1 0 Median 0.66317 0.64734 NaN 1 0 Median 1.0111 0.90833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21780000 11243000 10537000 3928200 2434400 1493800 2099200 1097500 1001800 7244600 3998100 3246600 8507900 3713000 4794900 0 0 0 0 0 0 35817 2496 37630 188800;188801;188802;188803 191754;191755 191754 2 VGLQAQPVPDEIVKK VQASFPEGALTKRIRVGLQAQPVPDEIVKK VGLQAQPVPDEIVKKILGNKATFSPIVTVE R V G K K I 1 0 0 1 0 2 1 1 0 1 1 2 0 0 2 0 0 0 0 3 0 0 15 1 1619.9247 Q12955;A0A087WZ65;A0A087WTF3 Q12955 1177 1191 ANK3 Ankyrin-3 yes no 3 6.7986E-05 68.972 By matching By matching By MS/MS By matching 1 1 2 2 0.83709 0.81936 23.155 6 Median 0.7796 0.78412 NaN 1 0 Median 1.3146 1.2818 NaN 1 0 Median 0.59957 0.69273 2.1795 2 0 Median 0.94682 0.89364 6.0535 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28798000 17523000 11275000 2821300 1398800 1422500 1018500 560130 458380 22314000 14268000 8045600 2644100 1295400 1348700 0 0 0 0 0 0 35818 2773 37631 188804;188805;188806;188807;188808;188809 191756;191757;191758;191759 191758 4 VGLQVVAVK VDGEALSTLVLNRLKVGLQVVAVKAPGFGD VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM K V G V K A 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 4 0 0 9 0 911.5804 P10809 P10809 293 301 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 1;2 0.00026628 139.28 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 7 3 3 2 3 1.4599 1.2654 24.985 23 Median 1.3496 1.2644 17.106 5 1 Median 1.4288 1.1984 24.375 7 1 Median 1.0577 1.0818 12.223 3 0 Median 1.7311 1.4843 10.099 3 0 Median 2.0412 2.0228 1.2094 2 0 Median 1.8339 1.577 7.7584 3 0 Median 1159100000 490290000 668820000 486230000 213490000 272740000 553750000 227180000 326560000 64820000 30744000 34076000 27493000 10176000 17317000 11378000 3673000 7705200 15443000 5017400 10425000 35819 1947 37632 188810;188811;188812;188813;188814;188815;188816;188817;188818;188819;188820;188821;188822;188823;188824;188825;188826;188827;188828;188829;188830;188831;188832;188833 191760;191761;191762;191763;191764;191765;191766;191767;191768;191769;191770;191771;191772;191773;191774;191775;191776;191777;191778;191779;191780;191781;191782;191783 191778 23 VGLTNYAAAYCTGLLLAR VCAAYAHELPKYGVKVGLTNYAAAYCTGLL TNYAAAYCTGLLLARRLLNRFGMDKIYEGQ K V G A R R 4 1 1 0 1 0 0 2 0 0 4 0 0 0 0 0 2 0 2 1 0 0 18 0 1926.0033 A0A2R8Y6J3;P46777;Q5T7N0;A0A2R8Y4A2 A0A2R8Y6J3 40 57 RPL5 60S ribosomal protein L5 yes no 2 0.001881 34.685 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.1706 1.0967 5.6589 5 Median 1.1398 1.0967 NaN 1 0 Median 1.2816 1.0774 9.6011 2 0 Median 1.1706 1.1237 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0013 1.0354 NaN 1 0 Median NaN NaN NaN 0 0 Median 20478000 9102400 11375000 2744100 1302600 1441400 15780000 6803300 8977100 1472200 726070 746110 0 0 0 481170 270320 210850 0 0 0 35820 375 37633 188834;188835;188836;188837;188838 191784;191785;191786;191787 191785 4 VGLTVGYQIR AISVAERVAKERAERVGLTVGYQIRLESVK ERAERVGLTVGYQIRLESVKSSATRLLYCT R V G I R L 0 1 0 0 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 2 0 0 10 0 1104.6291 Q6P158 Q6P158 621 630 DHX57 Putative ATP-dependent RNA helicase DHX57 yes yes 2 0.0070645 48.283 By MS/MS 1 1.919 1.8596 NaN 1 Median 1.919 1.8596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3847000 1510500 2336500 3847000 1510500 2336500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35821 3148 37634 188839 191788 191788 1 VGLVASQK HLGHFSKFIPEGSQRVGLVASQKNDLDAVA IPEGSQRVGLVASQKNDLDAVALMHPDGSA R V G Q K N 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 800.4756 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 386 393 GBA Glucosylceramidase yes no 2 0.011544 56.721 By MS/MS By MS/MS 1 1 1.1144 1.0183 5.2616 2 Median 1.0895 1.0569 NaN 1 0 Median 1.1398 0.98109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3642800 1815500 1827400 715720 317030 398690 2927100 1498400 1428700 0 0 0 0 0 0 0 0 0 0 0 0 35822 281 37635 188840;188841 191789;191790;191791 191791 3 VGMADANSPPKPLSKPR GRLENGNQARSEARRVGMADANSPPKPLSK MADANSPPKPLSKPRTPRRSKSDGEAKPEP R V G P R T 2 1 1 1 0 0 0 1 0 0 1 2 1 0 4 2 0 0 0 1 0 0 17 2 1763.9352 P26358;K7EJL0 P26358 120 136 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 3;4 0.01699 26.808 By MS/MS By MS/MS 1 1 0.36469 0.44348 74.804 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19779 0.26131 NaN 1 1 Median 0.67244 0.75265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17928000 14370000 3558000 0 0 0 0 0 0 14911000 12682000 2229600 3016800 1688400 1328400 0 0 0 0 0 0 35823 2142 37636 188842;188843 191792;191793;191794 191794 3 VGMGGMEAK YPGDQQSVTFGTKSRVGMGGMEAKVKAALW FGTKSRVGMGGMEAKVKAALWALQGGTSVV R V G A K V 1 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 1 0 0 9 0 878.39901 P54886 P54886 303 311 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0090248 49.536 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.4326 1.3366 18.618 5 Median 0.9956 0.9554 NaN 1 0 Median 1.5298 1.3366 NaN 1 0 Median 1.4249 1.4994 2.8239 2 0 Median 1.4326 1.246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17380000 7401800 9977900 3629600 1775400 1854200 7979600 3134100 4845500 4750500 2043800 2706700 1019900 448470 571450 0 0 0 0 0 0 35824 2488 37637 188844;188845;188846;188847;188848 191795;191796;191797 191797 3 VGMIPVPYVEK KPEEQWWSARNKDGRVGMIPVPYVEKLVRS KDGRVGMIPVPYVEKLVRSSPHGKHGNRNS R V G E K L 0 0 0 0 0 0 1 1 0 1 0 1 1 0 2 0 0 0 1 3 0 0 11 0 1230.6682 P46109 P46109 170 180 CRKL Crk-like protein yes yes 2 0.037765 28.727 By MS/MS By matching By MS/MS By matching 2 1 1 2 0.84226 0.74614 17.561 6 Median 0.78818 0.73184 16.239 2 0 Median 0.8069 0.67724 NaN 1 0 Median 0.70869 0.67819 NaN 1 0 Median 1.1115 0.93576 11.919 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29164000 16712000 12452000 19114000 11261000 7853100 5615900 2963400 2652500 4033000 2297100 1735900 400860 190500 210360 0 0 0 0 0 0 35825 2341 37638 188849;188850;188851;188852;188853;188854 191798;191799;191800;191801 191800 4 VGMQIPR VMVEPGTTVLQACEKVGMQIPRFCYHERLS TVLQACEKVGMQIPRFCYHERLSVAGNCRM K V G P R F 0 1 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 7 0 799.43744 P28331;C9JPQ5;F8WDL5 P28331 56 62 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.018719 80.377 By MS/MS 1 0.8541 0.83872 NaN 1 Median 0.8541 0.83872 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2476500 1448100 1028400 2476500 1448100 1028400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35826 2165 37639 188855 191802 191802 1 VGMQQMFALGER ETTLKGGMFAGQLTKVGMQQMFALGERLRK LTKVGMQQMFALGERLRKNYVEDIPFLSPT K V G E R L 1 1 0 0 0 2 1 2 0 0 1 0 2 1 0 0 0 0 0 1 0 0 12 0 1365.6533 A0A087WW36;A0A087WYU6;A0A0A0MS36;Q9NPH0 A0A087WW36 76 87 ACP6 Lysophosphatidic acid phosphatase type 6 yes no 2 0.00067049 62.303 By MS/MS 1 0.87558 0.8704 NaN 1 Median 0.87558 0.8704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4142600 2285900 1856700 4142600 2285900 1856700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35827 51 37640 188856 191803 191803 1 VGMVETNSQDRPVDDVK TIFGRVCQGIGMVNRVGMVETNSQDRPVDD MVETNSQDRPVDDVKIIKAYPSG_______ R V G V K I 0 1 1 3 0 1 1 1 0 0 0 1 1 0 1 1 1 0 0 4 0 0 17 1 1887.8996 Q9Y3C6 Q9Y3C6 142 158 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 2;3 7.2784E-07 95.401 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 2 1 0.89524 0.89951 8.5609 9 Median 0.90334 0.8916 0.53982 2 0 Median 1.1853 1.0462 NaN 1 0 Median 0.81375 0.84864 8.704 2 0 Median 1.0162 0.89951 NaN 1 0 Median 0.84426 0.95172 2.1893 2 0 Median 0.99746 0.79766 NaN 1 0 Median 85540000 43259000 42281000 31255000 15371000 15884000 14698000 6405300 8292500 20656000 11664000 8992300 4543200 2431500 2111700 12521000 6533100 5988200 1866900 855030 1011800 35828 4418 37641 188857;188858;188859;188860;188861;188862;188863;188864;188865 191804;191805;191806;191807;191808;191809;191810;191811;191812;191813;191814;191815 191806 12 VGNALWR SAASLWGPYKDIWHKVGNALWRRQPEAVHL PYKDIWHKVGNALWRRQPEAVHLLDKILKK K V G W R R 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 814.44497 Q92621 Q92621 24 30 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.010361 82.263 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.169 1.1422 15.776 4 Median NaN NaN NaN 0 0 Median 1.0655 0.88941 NaN 1 1 Median 1.0576 1.1533 NaN 1 0 Median 1.2825 1.1313 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5447 1.2951 NaN 1 0 Median 15048000 6521700 8526200 0 0 0 1201800 642350 559400 11952000 5125600 6826300 1004400 412790 591570 0 0 0 889860 340940 548920 35829 3547 37642 188866;188867;188868;188869 191816;191817;191818 191816 3 VGNGFEEGTTQGPLINEK AFVKAFAEAMKKNLRVGNGFEEGTTQGPLI GFEEGTTQGPLINEKAVEKVEKQVNDAVSK R V G E K A 0 0 2 0 0 1 3 4 0 1 1 1 0 1 1 0 2 0 0 1 0 0 18 0 1888.9167 P51649;C9J8Q5 P51649 370 387 ALDH5A1 Succinate-semialdehyde dehydrogenase, mitochondrial yes no 2 1.4317E-05 60.157 By MS/MS 2 0.82866 0.78058 5.4153 2 Median 0.82866 0.78058 5.4153 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11169000 6362600 4806400 11169000 6362600 4806400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35830 2439 37643 188870;188871 191819;191820 191820 2 VGNIEIKDLMVGDEASELR FPALVGRPIIRSTTKVGNIEIKDLMVGDEA EIKDLMVGDEASELRSMLEVNYPMENGIVR K V G L R S 1 1 1 2 0 0 3 2 0 2 2 1 1 0 0 1 0 0 0 2 0 0 19 1 2087.0569 P61160 P61160 47 65 ACTR2 Actin-related protein 2 yes yes 2;3 3.5876E-08 64.679 By MS/MS By matching 3 2 1.1083 1.1435 21.707 5 Median 1.0671 1.1435 28.321 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2612 1.1064 11.477 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29540000 14217000 15323000 26658000 12801000 13857000 0 0 0 0 0 0 2882000 1416600 1465400 0 0 0 0 0 0 35831 2546 37644;37645 188872;188873;188874;188875;188876 191821;191822;191823 191822 1221 3 VGNIIDTMITDAFLK FHTRNSLHRRAYQHKVGNIIDTMITDAFLK VGNIIDTMITDAFLKADDYIEITGAGGKKY K V G L K A 1 0 1 2 0 0 0 1 0 3 1 1 1 1 0 0 2 0 0 1 0 0 15 0 1649.8698 Q9Y3Z3;A0A2R8YCS7;A0A2R8YD90 Q9Y3Z3 378 392 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 0.0080393 32.523 By MS/MS By matching By matching 2 2 1 1.1898 1.1988 7.5746 5 Median 1.1115 1.0946 5.9807 2 0 Median NaN NaN NaN 0 0 Median 1.1932 1.2258 3.141 2 0 Median 1.4364 1.2593 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6992400 3159000 3833400 4694000 2122100 2571900 0 0 0 2187200 990910 1196300 111190 46009 65180 0 0 0 0 0 0 35832 4436 37646 188877;188878;188879;188880;188881 191824;191825 191825 2 VGNLGLATSFFNER SDIEEYVHRIGRTGRVGNLGLATSFFNERN RVGNLGLATSFFNERNINITKDLLDLLVEA R V G E R N 1 1 2 0 0 0 1 2 0 0 2 0 0 2 0 1 1 0 0 1 0 0 14 0 1523.7732 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8Y7T2;A0A2R8YDT5;A0A0J9YVQ7;A0A087WVZ1 A0A2U3TZJ9 534 547 DDX3X ATP-dependent RNA helicase DDX3X yes no 2;3 3.1885E-08 133.07 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 4 7 4 1.1633 1.1005 23.375 24 Median 1.0855 1.0225 11.488 4 0 Median 0.93698 0.82406 12.354 2 0 Median 1.2811 1.2788 15.909 3 0 Median 1.1624 0.98342 8.1135 4 0 Median 1.384 1.4741 8.5605 7 0 Median 1.1187 0.87619 5.6295 4 0 Linear 240360000 107130000 133230000 49553000 23747000 25807000 11314000 5472900 5840700 99800000 44062000 55738000 5293400 2506200 2787200 57930000 23696000 34234000 16466000 7642800 8822900 35833 263 37647 188882;188883;188884;188885;188886;188887;188888;188889;188890;188891;188892;188893;188894;188895;188896;188897;188898;188899;188900;188901;188902;188903;188904;188905 191826;191827;191828;191829;191830;191831;191832;191833;191834;191835;191836;191837;191838;191839;191840;191841;191842;191843;191844;191845;191846;191847;191848;191849;191850;191851;191852;191853;191854;191855;191856 191843 31 VGNLTVVGK CAQSFSKNFGLYNERVGNLTVVGKEPESIL GLYNERVGNLTVVGKEPESILQVLSQMEKI R V G G K E 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 3 0 0 9 0 885.52837 P17174 P17174 268 276 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00061082 109.71 By matching By MS/MS 1 2 1.3032 1.3283 13.753 3 Median 1.3032 1.3283 NaN 1 0 Median 1.3192 1.2212 18.198 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9830800 4412600 5418100 1514600 691560 823080 8316100 3721100 4595000 0 0 0 0 0 0 0 0 0 0 0 0 35834 2038 37648 188906;188907;188908 191857;191858 191858 2 VGNNFHNLQEIR YKSDESYTPSKISVRVGNNFHNLQEIRQLE SVRVGNNFHNLQEIRQLELVEPSGWIHVPL R V G I R Q 0 1 3 0 0 1 1 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 12 0 1439.727 Q9UM13;D6R9Q5;A0A3B3ISY7;A0A286YEY6;D6RD74;D6RA92 Q9UM13 98 109 ANAPC10 Anaphase-promoting complex subunit 10 yes no 2;3 0.00013943 76.522 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1 1.2185 1.0129 20.201 8 Median 1.4856 1.4012 NaN 1 1 Median 1.7703 1.5349 NaN 1 0 Median 0.9456 0.90819 11.986 2 0 Median 1.2389 1.0288 0.88982 2 1 Median 1.0142 1.0035 NaN 1 0 Median 1.2078 0.97878 NaN 1 0 Median 69676000 34473000 35203000 3531500 1382300 2149100 1029200 543930 485300 48055000 24908000 23147000 12805000 5705000 7100100 3461300 1588500 1872800 793240 344690 448550 35835 4332 37649 188909;188910;188911;188912;188913;188914;188915;188916 191859;191860;191861;191862;191863 191862 5 VGNPFELDTQQGPQVDKEQFER NEFLERTVEKAKQRKVGNPFELDTQQGPQV DTQQGPQVDKEQFERVLGYIQLGQKEGAKL K V G E R V 0 1 1 2 0 4 3 2 0 0 1 1 0 2 2 0 1 0 0 2 0 0 22 1 2560.2194 P30837 P30837 348 369 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 3 0.010828 20.426 By MS/MS By matching 1 1 0.91445 0.87069 24.453 2 Median 0.73383 0.73244 NaN 1 0 Median 1.1395 1.035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6562100 3448600 3113500 6295700 3321500 2974200 266390 127050 139340 0 0 0 0 0 0 0 0 0 0 0 0 35836 2199 37650 188917;188918 191864 191864 1 VGNPWDPNVLYGPLHTK DEVVNRLKKAYAQIRVGNPWDPNVLYGPLH NPWDPNVLYGPLHTKQAVSMFLGAVEEAKK R V G T K Q 0 0 2 1 0 0 0 2 1 0 2 1 0 0 3 0 1 1 1 2 0 0 17 0 1905.9737 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTJ4;A0A1B0GV49 P49419 359 375 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 3 0.016483 30.107 By MS/MS 2 0.63582 0.58931 0.97507 2 Median 0.63582 0.58931 0.97507 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25131000 16294000 8836500 25131000 16294000 8836500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35837 318 37651 188919;188920 191865;191866;191867 191866 3 VGNQIFQSR KGLVKGKSDPYGIIRVGNQIFQSRVIKENL PYGIIRVGNQIFQSRVIKENLSPKWNEVYE R V G S R V 0 1 1 0 0 2 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1047.5461 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8 A0A499FIX8 344 352 ESYT2 Extended synaptotagmin-2 yes no 2 0.0027555 69.812 By MS/MS 1 0.91933 0.79876 NaN 1 Median NaN NaN NaN 0 0 Median 0.91933 0.79876 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2138500 1123600 1014900 0 0 0 2138500 1123600 1014900 0 0 0 0 0 0 0 0 0 0 0 0 35838 72 37652 188921 191868 191868 1 VGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFR ______________________________ EPAADAAPGPSAAFRLMVTRREPAVKLQYA R V G F R L 9 1 0 3 0 0 6 10 0 0 0 1 0 1 6 2 0 0 0 1 0 0 40 1 3633.6092 Q9UKN8;F2Z356 Q9UKN8 9 48 GTF3C4 General transcription factor 3C polypeptide 4 yes no 4 1.629E-06 37.648 By MS/MS 1 0.2973 0.33707 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2973 0.33707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9998900 6781800 3217100 0 0 0 0 0 0 9998900 6781800 3217100 0 0 0 0 0 0 0 0 0 35839 4314 37653 188922 191869 191869 1 VGPDVVTDPAFLVTR HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK R V G T R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 2 0 2 0 0 4 0 0 15 0 1584.8512 Q9NV31 Q9NV31 138 152 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 5.5663E-05 83.314 By MS/MS By MS/MS By matching By MS/MS 1 1 1 3 0.92552 0.9349 11.151 6 Median NaN NaN NaN 0 0 Median 1.1272 0.93781 NaN 1 0 Median 0.8511 0.8165 NaN 1 0 Median 1.3796 1.1299 NaN 1 0 Median 0.92057 0.93199 6.2628 3 0 Median NaN NaN NaN 0 0 Median 46772000 24814000 21957000 0 0 0 1035200 497330 537870 5987200 3334400 2652900 343590 135590 208000 39406000 20847000 18558000 0 0 0 35840 4122 37654 188923;188924;188925;188926;188927;188928 191870;191871;191872;191873;191874;191875;191876;191877;191878 191876 9 VGPEELPVVGQLLR PRVLRLMLQSLRVNRVGPEELPVVGQLLRL RVGPEELPVVGQLLRLLLQHAPLRTHMLTN R V G L R L 0 1 0 0 0 1 2 2 0 0 3 0 0 0 2 0 0 0 0 3 0 0 14 0 1504.8613 Q9NXF1 Q9NXF1 852 865 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.011444 33.225 By MS/MS By matching By matching By matching 1 1 1 2 0.73747 0.79263 20.094 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73747 0.79263 NaN 1 0 Median 1.048 0.86496 NaN 1 0 Median 0.69931 0.74491 NaN 1 0 Median 0.96012 0.80832 38.741 2 0 Median 5118400 2807100 2311300 0 0 0 0 0 0 3085000 1737300 1347700 132790 56487 76302 1712900 916450 796430 187720 96921 90794 35841 4163 37655 188929;188930;188931;188932;188933 191879;191880;191881 191879 3 VGPGAGESPGTPPFR GLFGFAARTSVFLVRVGPGAGESPGTPPFR VGPGAGESPGTPPFRVIGELVGHTERVSGF R V G F R V 1 1 0 0 0 0 1 4 0 0 0 0 0 1 4 1 1 0 0 1 0 0 15 0 1424.7048 Q8TEQ6 Q8TEQ6 41 55 GEMIN5 Gem-associated protein 5 yes yes 2 0.00022796 72.652 By MS/MS By MS/MS 1 1 0.87338 0.78129 2.3106 2 Median 0.81884 0.76863 NaN 1 0 Median 0.93155 0.79416 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14417000 5415700 9001500 10509000 3380000 7128600 3908500 2035700 1872900 0 0 0 0 0 0 0 0 0 0 0 0 35842 3478 37656 188934;188935 191882;191883 191882 2 VGPGDRPLYLHVQGQTR VSTRGRFMTTEEKAKVGPGDRPLYLHVQGQ PGDRPLYLHVQGQTRELVDRAVNRIKEIIT K V G T R E 0 2 0 1 0 2 0 3 1 0 2 0 0 0 2 0 1 0 1 2 0 0 17 1 1892.0017 Q7Z7F0 Q7Z7F0 152 168 KIAA0907 UPF0469 protein KIAA0907 yes yes 3;4 8.1981E-06 58.09 By MS/MS By MS/MS 2 2 0.69898 0.72788 3.7756 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65227 0.72788 0.68616 2 0 Median 0.78049 0.72724 6.5028 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39341000 23300000 16041000 0 0 0 0 0 0 33123000 19786000 13337000 6217700 3513600 2704200 0 0 0 0 0 0 35843 3256 37657 188936;188937;188938;188939 191884;191885;191886;191887;191888;191889;191890 191887 7 VGPGPALMLR HNLSGRYESRWASVRVGPGPALMLRGMEGA WASVRVGPGPALMLRGMEGAVLPVWSAHGE R V G L R G 1 1 0 0 0 0 0 2 0 0 2 0 1 0 2 0 0 0 0 1 0 0 10 0 1009.5743 O15067;H0YGH1 O15067 1211 1220 PFAS Phosphoribosylformylglycinamidine synthase yes no 2 0.0013066 85.212 By MS/MS By MS/MS By matching 2 1 1 0.82982 0.73817 17.635 4 Median 0.72717 0.69315 15.297 2 1 Median 0.8406 0.70553 NaN 1 0 Median 0.87031 0.94573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26162000 14332000 11830000 17295000 9714800 7580700 7332100 3846700 3485500 1534300 770540 763800 0 0 0 0 0 0 0 0 0 35844 1518 37658 188940;188941;188942;188943 191891;191892;191893;191894;191895 191893 5 VGPMPWLGPQTDESIK RLEYCNPYRLVWQSKVGPMPWLGPQTDESI GPMPWLGPQTDESIKGLCERGRKNILLVPI K V G I K G 0 0 0 1 0 1 1 2 0 1 1 1 1 0 3 1 1 1 0 1 0 0 16 0 1753.8709 P22830;K7ELX4;A0A499FJN5;K7EJX5 P22830 305 320 FECH Ferrochelatase, mitochondrial;Ferrochelatase yes no 2 4.8763E-06 86.313 By MS/MS 2 0.36962 0.38975 7.5051 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36962 0.38975 7.5051 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11572000 8454600 3117100 0 0 0 0 0 0 11572000 8454600 3117100 0 0 0 0 0 0 0 0 0 35845 2106 37659;37660 188944;188945 191896;191897 191896 864 2 VGPQVPLSEPGFR PFQHRGGDSPEAKNRVGPQVPLSEPGFRRR NRVGPQVPLSEPGFRRRESQEEPRAVLAQK R V G F R R 0 1 0 0 0 1 1 2 0 0 1 0 0 1 3 1 0 0 0 2 0 0 13 0 1381.7354 A0A3B3ISQ4;Q9H6S3;H0YD62;H0YF37 A0A3B3ISQ4 224 236 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 yes no 2 0.0132 34.532 By matching By MS/MS 1 1 0.41033 0.42925 62.873 2 Median 0.26687 0.27519 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6309 0.66956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7693000 5258400 2434500 4558800 3439200 1119600 0 0 0 3134200 1819200 1315000 0 0 0 0 0 0 0 0 0 35846 426 37661 188946;188947 191898 191898 1 VGPQYQAVVPDFDPAK SGSSSDEEHGGGGMRVGPQYQAVVPDFDPA GPQYQAVVPDFDPAKLARRSQERDNLGMLV R V G A K L 2 0 0 2 0 2 0 1 0 0 0 1 0 1 3 0 0 0 1 3 0 0 16 0 1729.8675 Q9UKL0 Q9UKL0 107 122 RCOR1 REST corepressor 1 yes yes 2 0.00011374 68.44 By MS/MS 1 0.46927 0.45552 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46927 0.45552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14051000 10126000 3924800 0 0 0 0 0 0 14051000 10126000 3924800 0 0 0 0 0 0 0 0 0 35847 4312 37662 188948 191899;191900 191899 2 VGPVAATYPMLNK LLEHKMERPGPSLKRVGPVAATYPMLNKKG KRVGPVAATYPMLNKKGPVPAATNGCTGDA R V G N K K 2 0 1 0 0 0 0 1 0 0 1 1 1 0 2 0 1 0 1 2 0 0 13 0 1359.7221 Q9NPH2;J3QS51 Q9NPH2 518 530 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2 3.96E-07 109.29 By MS/MS 2 0.4498 0.42229 8.985 2 Median 0.4498 0.42229 8.985 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27966000 18722000 9244000 27966000 18722000 9244000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35848 4052 37663 188949;188950 191901;191902;191903 191902 3 VGQALELPLR EPHSMEFAPCQVEARVGQALELPLRISGLM QVEARVGQALELPLRISGLMPGGASEVVTL R V G L R I 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1094.6448 Q8TEM1 Q8TEM1 549 558 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00035294 124.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 2 1 1.0462 0.89899 18.531 8 Median 1.0672 1.0219 NaN 1 0 Median 1.0928 0.89899 5.0937 2 0 Median 0.76014 0.80924 0.84157 2 0 Median 1.3545 1.1852 8.8889 2 1 Median 0.69625 0.72447 NaN 1 0 Median NaN NaN NaN 0 0 Median 171560000 91548000 80010000 4788800 2583600 2205200 22747000 10375000 12372000 131610000 72643000 58970000 6259600 2651600 3608000 6150300 3294800 2855500 0 0 0 35849 3477 37664 188951;188952;188953;188954;188955;188956;188957;188958 191904;191905;191906;191907;191908;191909;191910;191911;191912;191913 191906 10 VGQAMASTEEK ILVDNNTWNNTHISRVGQAMASTEEKAYEI HISRVGQAMASTEEKAYEIMRELDVSYVLV R V G E K A 2 0 0 0 0 1 2 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1149.5336 P46977 P46977 555 565 STT3A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A yes yes 2 0.0050537 46.819 By matching By MS/MS 1 3 1.0563 0.96549 11.849 4 Median 0.98958 0.96588 NaN 1 0 Median 1.1275 0.9651 14.512 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2205000 967830 1237100 107470 61217 46254 2097500 906620 1190900 0 0 0 0 0 0 0 0 0 0 0 0 35850 2352 37665 188959;188960;188961;188962 191914;191915;191916 191916 3 VGQASEIAR PAPQISDAELQEVVKVGQASEIARQTAEES LQEVVKVGQASEIARQTAEESGITNSASST K V G A R Q 2 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 9 0 929.49304 Q99459 Q99459 313 321 CDC5L Cell division cycle 5-like protein yes yes 2 0.0040235 61.962 By matching By MS/MS By MS/MS By matching By matching By MS/MS 1 1 3 2 2 2 1.0831 1.0749 13.387 11 Median 1.0831 1.1353 NaN 1 0 Median 1.0029 0.88568 NaN 1 0 Median 1.0262 1.0749 6.4396 3 0 Median 1.0705 0.91262 9.4392 2 0 Median 1.1202 1.2268 1.0028 2 0 Median 1.1791 0.9836 14.636 2 0 Median 20870000 9545500 11325000 10398000 4782700 5615400 1313500 525190 788300 5612900 2655000 2957900 681700 308430 373260 1846100 812840 1033300 1018100 461340 556730 35851 3745 37666 188963;188964;188965;188966;188967;188968;188969;188970;188971;188972;188973 191917;191918;191919;191920;191921 191918 5 VGQAVALR ARIRGETLGIIGLGRVGQAVALRAKAFGFN GIIGLGRVGQAVALRAKAFGFNVLFYDPYL R V G L R A 2 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 812.48684 Q13363;D6RAX2;H0Y8W7;H0Y9M9 Q13363 185 192 CTBP1 C-terminal-binding protein 1 yes no 2 0.0079765 64.803 By MS/MS By MS/MS By matching 3 2 1 1.5897 1.3815 15.602 6 Median NaN NaN NaN 0 0 Median 1.6562 1.434 6.1666 3 0 Median 1.0791 1.0876 10.375 2 0 Median 1.719 1.4757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10777000 4724400 6052700 0 0 0 3675600 1409500 2266000 6506300 3091700 3414700 595150 223150 372000 0 0 0 0 0 0 35852 2808 37667 188974;188975;188976;188977;188978;188979 191922;191923;191924 191923 3 VGQAVDVVGQAGKPK VTFDEELRPLPVSVRVGQAVDVVGQAGKPK VGQAVDVVGQAGKPKTITGFQTHTTPVLLA R V G P K T 2 0 0 1 0 2 0 3 0 0 0 2 0 0 1 0 0 0 0 4 0 0 15 1 1451.8096 Q13200 Q13200 846 860 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2;3 2.1199E-07 143.97 By MS/MS By MS/MS By MS/MS By MS/MS 7 4 1 1 1.0526 1.0774 24.196 13 Median 0.92224 0.99592 17.331 7 0 Median 1.1207 1.0668 14.6 4 0 Median 1.5937 1.8234 NaN 1 0 Median 1.5356 1.5001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73835000 34853000 38983000 26415000 12862000 13553000 43328000 20710000 22618000 2851800 844040 2007800 1239700 436640 803030 0 0 0 0 0 0 35853 2796 37668 188980;188981;188982;188983;188984;188985;188986;188987;188988;188989;188990;188991;188992 191925;191926;191927;191928;191929;191930;191931;191932;191933;191934;191935;191936;191937;191938;191939;191940;191941;191942 191939 18 VGQDPVLR LVLERSLNRVHLLGRVGQDPVLRQVEGKNP RVHLLGRVGQDPVLRQVEGKNPVTIFSLAT R V G L R Q 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 8 0 882.49232 Q04837;A0A0G2JLD8;E7EUY5;C9K0U8 Q04837 39 46 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes no 2 0.0024453 120.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 3 1 1.0499 0.99832 19.043 9 Median 0.9215 0.90672 11.091 2 0 Median 1.1949 1.019 NaN 1 0 Median 0.98904 0.99832 NaN 1 0 Median 1.2631 0.98942 NaN 1 0 Median 1.0499 1.1085 34.91 3 0 Median 1.4972 1.1182 NaN 1 0 Median 133000000 63506000 69497000 12998000 6512100 6485500 29727000 13869000 15859000 47485000 24192000 23293000 17948000 7699500 10249000 19838000 9260500 10578000 5006600 1972500 3034000 35854 2713 37669 188993;188994;188995;188996;188997;188998;188999;189000;189001 191943;191944;191945;191946;191947;191948;191949;191950 191946 8 VGQEIEVRPGIVSK KGGVAGGSILKGVLKVGQEIEVRPGIVSKD KVGQEIEVRPGIVSKDSEGKLMCKPIFSKI K V G S K D 0 1 0 0 0 1 2 2 0 2 0 1 0 0 1 1 0 0 0 3 0 0 14 1 1509.8515 P41091 P41091 290 303 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 2;3 1.2124E-54 236.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 4 6 8 2 1.0111 0.97875 18.379 29 Median 0.88999 0.94203 19.165 9 0 Median 0.9843 0.89223 9.5666 4 0 Median 1.1388 1.1785 14.385 6 0 Median 1.0849 0.99165 11.07 8 0 Median NaN NaN NaN 0 0 Median 0.89135 0.79137 13.155 2 0 Median 594870000 290990000 303880000 96325000 49359000 46966000 50496000 25116000 25381000 166410000 78706000 87707000 270940000 132470000 138470000 0 0 0 10698000 5339400 5358800 35855 2295 37670 189002;189003;189004;189005;189006;189007;189008;189009;189010;189011;189012;189013;189014;189015;189016;189017;189018;189019;189020;189021;189022;189023;189024;189025;189026;189027;189028;189029;189030 191951;191952;191953;191954;191955;191956;191957;191958;191959;191960;191961;191962;191963;191964;191965;191966;191967;191968;191969;191970;191971;191972;191973;191974;191975;191976;191977;191978;191979;191980;191981;191982;191983 191974 33 VGQEKEETVSSHFEMR VLQRNLTEKEKLLQRVGQEKEETVSSHFEM GQEKEETVSSHFEMRCQYQERLIKLEHAEA R V G M R C 0 1 0 0 0 1 4 1 1 0 0 1 1 1 0 2 1 0 0 2 0 0 16 1 1891.8734 Q13439;H0Y6I0 Q13439 1755 1770 GOLGA4 Golgin subfamily A member 4 yes no 4 0.0063855 25.59 By MS/MS 1 0.90934 0.92792 NaN 1 Median 0.90934 0.92792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2266900 1172900 1094100 2266900 1172900 1094100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35856 1156 37671 189031 191984 191984 1 VGQETFYDVYR FVLGGTMEWIMIKVRVGQETFYDVYRRKAS IKVRVGQETFYDVYRRKASERQYQRRLEDE R V G Y R R 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 2 2 0 0 11 0 1375.6408 Q8WVI0 Q8WVI0 45 55 SMIM4 Small integral membrane protein 4 yes yes 2 0.00014249 87.913 By MS/MS By MS/MS 1 2 1.27 1.0035 13.019 3 Plateau 1.2782 1.2431 NaN 1 0 Median 1.1999 0.99288 1.4997 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15517000 6743100 8774300 9184400 3936400 5248000 6333000 2806700 3526200 0 0 0 0 0 0 0 0 0 0 0 0 35857 3501 37672 189032;189033;189034 191985;191986;191987;191988;191989 191987 5 VGQETFYDVYRR FVLGGTMEWIMIKVRVGQETFYDVYRRKAS KVRVGQETFYDVYRRKASERQYQRRLEDE_ R V G R R K 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 2 2 0 0 12 1 1531.7419 Q8WVI0 Q8WVI0 45 56 SMIM4 Small integral membrane protein 4 yes yes 3 0.0056469 31.185 By MS/MS By matching 1 1 1.582 1.4591 13.918 2 Median 1.6137 1.61 NaN 1 0 Median 1.551 1.3224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4614300 1890800 2723500 3322400 1342600 1979800 1292000 548220 743760 0 0 0 0 0 0 0 0 0 0 0 0 35858 3501 37673 189035;189036 191990 191990 1 VGQISFDLPR QSAYAQIVQFGMNEKVGQISFDLPRQGDMV GMNEKVGQISFDLPRQGDMVLEKPYSEATA K V G P R Q 0 1 0 1 0 1 0 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 10 0 1130.6084 Q9Y4W6 Q9Y4W6 670 679 AFG3L2 AFG3-like protein 2 yes yes 2 0.013584 56.432 By MS/MS By MS/MS 1 1 0.94583 0.93645 16.531 2 Median 0.8798 0.83314 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0168 1.0526 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13736000 7326100 6410400 7515000 4247400 3267600 0 0 0 6221500 3078700 3142800 0 0 0 0 0 0 0 0 0 35859 4449 37674 189037;189038 191991;191992 191991 2 VGQLSEGAIAAIMQK ______________________________ VGQLSEGAIAAIMQKGDTNIKPILQVINIR M V G Q K G 3 0 0 0 0 2 1 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 15 0 1514.8127 P27694 P27694 2 16 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.0002791 69.349 By MS/MS By MS/MS 1 1 1.0943 1.0699 6.0075 2 Median 1.0869 1.0254 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1016 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21030000 9551700 11478000 9677000 4386600 5290300 0 0 0 11353000 5165100 6187500 0 0 0 0 0 0 0 0 0 35860 2156 37675 189039;189040 191993;191994;191995;191996 191996 4 VGQTIER GMGFGLERMAAPIDRVGQTIERMGSGVERM RMAAPIDRVGQTIERMGSGVERMGPAIERM R V G E R M 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 801.43447 A0A087X0X3;P52272;M0R2I7;M0QZM1 A0A087X0X3 504 510 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.009327 85.359 By matching By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 2 1 4 3 1.2041 1.1075 17.201 13 Median 1.3627 1.3632 NaN 1 0 Median 1.1322 0.99454 3.9243 2 1 Median 1.1996 1.2328 37.96 2 0 Median 1.3298 1.1075 NaN 1 0 Median 1.057 1.0422 14.231 4 0 Median 1.5068 1.2518 5.9315 3 0 Median 19421000 9646800 9774600 338990 139530 199450 3274900 1634900 1640100 3874400 1991600 1882800 199490 92205 107290 10053000 5098700 4954700 1680100 689890 990250 35861 116;1423 37676 189041;189042;189043;189044;189045;189046;189047;189048;189049;189050;189051;189052;189053 191997;191998;191999;192000;192001;192002;192003 192001 7 VGRPIVEALR HPKALAELTKSDWERVGRPIVEALREISSA SDWERVGRPIVEALREISSAAAHSQPFAWK R V G L R E 1 2 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 10 1 1108.6717 I3L2C7;P57678;E7EN12;I3L4M4;I3L4A4;I3L399;I3L1J7 I3L2C7 31 40 GEMIN4 Gem-associated protein 4 yes no 2 0.00371 71.349 By MS/MS 1 1.0771 1.0385 NaN 1 Median NaN NaN NaN 0 0 Median 1.0771 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8902400 4160600 4741700 0 0 0 8902400 4160600 4741700 0 0 0 0 0 0 0 0 0 0 0 0 35862 1282 37677 189054 192004;192005 192004 2 VGRPSNIGQAQPIIDQLAEEAR LEQMNSVMLGGRNIKVGRPSNIGQAQPIID GQAQPIIDQLAEEARAFNRIYVASVHQDLS K V G A R A 3 2 1 1 0 3 2 2 0 3 1 0 0 0 2 1 0 0 0 1 0 0 22 1 2361.2401 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7 A0A0J9YVP6 177 198 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 3 2.6145E-26 141.78 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 4 1 1 0.71838 0.69446 19.307 12 Median 0.59481 0.62285 3.9564 2 1 Median NaN NaN NaN 0 0 Median 0.66127 0.71597 30.071 4 2 Median 0.80492 0.72439 9.7824 4 1 Median 0.72669 0.78274 NaN 1 0 Median 0.77679 0.69197 NaN 1 0 Median 224330000 128730000 95596000 10529000 5532500 4996700 0 0 0 200240000 115960000 84279000 6928500 3362200 3566300 6017000 3541200 2475900 613140 334230 278910 35863 284 37678 189055;189056;189057;189058;189059;189060;189061;189062;189063;189064;189065;189066 192006;192007;192008;192009;192010;192011;192012;192013;192014;192015;192016;192017;192018;192019;192020 192012 15 VGRQELEIVIGDEHISFTTSK EITKEDDALWPPPDRVGRQELEIVIGDEHI EIVIGDEHISFTTSKIGSLIDVNQSKDPEG R V G S K I 0 1 0 1 0 1 3 2 1 3 1 1 0 1 0 2 2 0 0 2 0 0 21 1 2357.2227 P61326;F5H6P7;Q96A72 Q96A72 85 105 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3 0.02763 21.616 By MS/MS 1 0.76239 0.85877 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76239 0.85877 NaN 1 1 Median NaN NaN NaN 0 0 Median 3706100 2102000 1604100 0 0 0 0 0 0 0 0 0 0 0 0 3706100 2102000 1604100 0 0 0 35864 2556;3596 37679 189067 192021 192021 1 VGSAADIPINISETDLSLLTATVVPPSGR ARVTGDDSMRMSHLKVGSAADIPINISETD DLSLLTATVVPPSGREEPCLLKRLRNGHVG K V G G R E 3 1 1 2 0 0 1 2 0 3 3 0 0 0 3 4 3 0 0 3 0 0 29 0 2892.5444 P21333;H0Y5F3;H7C2E7;Q60FE5 P21333 1965 1993 FLNA Filamin-A no no 3 0.0060588 21.925 By matching By MS/MS By matching 3 1 1 0.60184 0.56121 10.186 5 Median 0.64435 0.64084 7.1872 3 0 Plateau 0.60184 0.50312 NaN 1 0 Median 0.48658 0.54194 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7667000 4499300 3167700 1466700 861810 604910 6054300 3579600 2474600 146030 57825 88205 0 0 0 0 0 0 0 0 0 35865 2088;3120 37680 189068;189069;189070;189071;189072 192022;192023 192022 2 VGSEIER GMERMGAGLGHGMDRVGSEIERMGLVMDRM GLGHGMDRVGSEIERMGLVMDRMGSVERMG R V G E R M 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 7 0 788.40283 A0A087X0X3;P52272;M0QZM1 A0A087X0X3 430 436 HNRNPM Heterogeneous nuclear ribonucleoprotein M no no 2 0.017967 81.784 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8663500 0 8663500 0 0 0 0 0 0 5402700 0 5402700 0 0 0 2652200 0 2652200 608610 0 608610 35866 116;1423 37681 189073;189074;189075 192024;192025;192026 192024 3 VGSGDTNNFPYLEK MAVEFLHELNVPFFKVGSGDTNNFPYLEKT KVGSGDTNNFPYLEKTAKKGRPMVISSGMQ K V G E K T 0 0 2 1 0 0 1 2 0 0 1 1 0 1 1 1 1 0 1 1 0 0 14 0 1539.7205 Q9NR45 Q9NR45 132 145 NANS Sialic acid synthase yes yes 2 5.4254E-05 84.658 By MS/MS By matching By matching 1 1 1 1.0741 0.92166 24.222 3 Median 0.98484 0.90787 NaN 1 0 Median 1.0741 0.92166 NaN 1 0 Median 1.18 1.3913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33687000 16272000 17415000 25809000 12968000 12841000 1560300 696380 863910 6318100 2607300 3710700 0 0 0 0 0 0 0 0 0 35867 4079 37682 189076;189077;189078 192027;192028;192029;192030 192029 4 VGSGSLDNLGR EKENTEQRAEEIESRVGSGSLDNLGRFRSM IESRVGSGSLDNLGRFRSMSSIPPYPASSL R V G G R F 0 1 1 1 0 0 0 3 0 0 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1073.5465 A0A2R8Y7R9;Q13136;H0YDW2 A0A2R8Y7R9 646 656 PPFIA1 Liprin-alpha-1 yes no 2 0.0076573 60.518 By MS/MS 1 1.0837 0.91032 NaN 1 Median NaN NaN NaN 0 0 Median 1.0837 0.91032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6792700 3003800 3788900 0 0 0 6792700 3003800 3788900 0 0 0 0 0 0 0 0 0 0 0 0 35868 382 37683 189079 192031 192031 1 VGSHITGGDIYGIVSENSLIK SRDIKWDFTPCKNLRVGSHITGGDIYGIVS GGDIYGIVSENSLIKHKIMLPPRNRGTVTY R V G I K H 0 0 1 1 0 0 1 4 1 4 1 1 0 0 0 3 1 0 1 2 0 0 21 0 2158.127 P38606;C9JA17;C9JVW8 P38606 143 163 ATP6V1A V-type proton ATPase catalytic subunit A yes no 3 2.6444E-14 91.725 By MS/MS By MS/MS By MS/MS 1 1 1 1.2224 1.0192 16.656 3 Median 1.013 0.93857 NaN 1 0 Median 1.2224 1.0192 NaN 1 0 Median 1.2557 1.2935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89034000 41526000 47508000 54272000 25638000 28633000 27028000 12506000 14522000 7734400 3382500 4351900 0 0 0 0 0 0 0 0 0 35869 2276 37684 189080;189081;189082 192032;192033;192034;192035;192036;192037 192037 6 VGSHPEGGASWLSTAANFLSR EDESPTKEQDKAVSRVGSHPEGGASWLSTA GGASWLSTAANFLSRSFYW___________ R V G S R S 3 1 1 0 0 0 1 3 1 0 2 0 0 1 1 4 1 1 0 1 0 0 21 0 2143.0447 Q9NVT9 Q9NVT9 258 278 ARMC1 Armadillo repeat-containing protein 1 yes yes 3 0.013055 18.316 By MS/MS By matching 1 1 1.3408 1.1271 20.32 2 Median NaN NaN NaN 0 0 Median 1.1642 0.97623 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5441 1.3012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2870200 1487900 1382300 0 0 0 2717400 1367000 1350300 0 0 0 152840 120870 31960 0 0 0 0 0 0 35870 4140 37685 189083;189084 192038 192038 1 VGSHPELLPSIAPSQNLVSK GIASESLAGGLVEEKVGSHPELLPSIAPSQ ELLPSIAPSQNLVSKETSTTALQASVARPE K V G S K E 1 0 1 0 0 1 1 1 1 1 3 1 0 0 3 4 0 0 0 2 0 0 20 0 2072.1266 Q14686 Q14686 1954 1973 NCOA6 Nuclear receptor coactivator 6 yes yes 3 3.1353E-08 61.684 By MS/MS 1 0.4797 0.52974 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4797 0.52974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10528000 7086500 3441900 0 0 0 0 0 0 10528000 7086500 3441900 0 0 0 0 0 0 0 0 0 35871 2891 37686 189085 192039;192040 192040 2 VGSLDNVGHLPAGGAVK IESQKLNFKEKAQAKVGSLDNVGHLPAGGA SLDNVGHLPAGGAVKTEGGGSEAPLCPGPP K V G V K T 2 0 1 1 0 0 0 4 1 0 2 1 0 0 1 1 0 0 0 3 0 0 17 0 1589.8526 E7EVA0;P27816;H7C4C5;H0Y2V1;F8W9U4 E7EVA0 2216 2232 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2;3 5.2792E-24 184.44 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 7 6 1 1 0.90978 0.81308 49.428 21 Median 0.66447 0.63935 24.071 4 0 Median 0.71685 0.62164 18.347 2 0 Median 1.2377 1.1928 30.137 7 1 Median 0.92127 0.82101 17.312 6 2 Median 0.31054 0.32113 NaN 1 0 Median 0.2547 0.2109 NaN 1 0 Median 393140000 181950000 211190000 83045000 45685000 37360000 13061000 7343500 5717700 207050000 83857000 123190000 85541000 42433000 43107000 3167600 1832800 1334800 1279800 800540 479230 35872 895 37687 189086;189087;189088;189089;189090;189091;189092;189093;189094;189095;189096;189097;189098;189099;189100;189101;189102;189103;189104;189105;189106 192041;192042;192043;192044;192045;192046;192047;192048;192049;192050;192051;192052;192053;192054;192055;192056;192057;192058;192059;192060;192061;192062;192063;192064 192046 24 VGSLYPEMSAHER YEHALSQCSVDVYKKVGSLYPEMSAHERSL KKVGSLYPEMSAHERSLDFLIELLHKDQLD K V G E R S 1 1 0 0 0 0 2 1 1 0 1 0 1 0 1 2 0 0 1 1 0 0 13 0 1474.6875 E7EX90;Q14203;Q6AWB1 E7EX90 668 680 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 3 0.00099519 43.405 By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1.1945 1.1565 33.461 6 Median 1.4244 1.3699 49.536 2 0 Median 1.6324 1.3823 NaN 1 0 Median 1.1409 1.2528 NaN 1 0 Median 1.0201 0.88219 26.982 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18387000 7836500 10551000 9603800 4178800 5425000 4211500 1482900 2728600 3110100 1512800 1597300 1461900 661980 799930 0 0 0 0 0 0 35873 906 37688 189107;189108;189109;189110;189111;189112 192065;192066;192067;192068;192069 192065 5 VGSPATVTFQQNK SGSVTTGTKMVLTTKVGSPATVTFQQNKNF TKVGSPATVTFQQNKNFHQTFATWVKQGQS K V G N K N 1 0 1 0 0 2 0 1 0 0 0 1 0 1 1 1 2 0 0 2 0 0 13 0 1375.7096 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;J3QQK4 Q12830 2096 2108 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 9.0216E-09 136.63 By MS/MS By MS/MS By MS/MS 2 2 1 0.85227 0.88468 15.501 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77454 0.84498 2.2974 2 1 Median 1.0991 1.0327 17.689 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25029000 13524000 11505000 0 0 0 0 0 0 18346000 10276000 8070400 6682800 3248400 3434400 0 0 0 0 0 0 35874 2762 37689 189113;189114;189115;189116;189117 192070;192071;192072;192073;192074;192075;192076 192076 7 VGSPERPLSDLGLISYR MLIDFSYLLSKVEEKVGSPERPLSDLGLIS SPERPLSDLGLISYRSYWKEVLLRYLHNFQ K V G Y R S 0 2 0 1 0 0 1 2 0 1 3 0 0 0 2 3 0 0 1 1 0 0 17 1 1857.9949 O95251;E7EUP3 O95251 504 520 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 3 6.7355E-06 75.018 By MS/MS By MS/MS 1 2 0.64917 0.69291 15.588 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5835 0.65114 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7231 0.77871 16.51 2 0 Median NaN NaN NaN 0 0 Median 14912000 9151300 5761000 0 0 0 0 0 0 8523800 5793200 2730600 0 0 0 6388600 3358100 3030400 0 0 0 35875 1759 37690 189118;189119;189120 192077;192078;192079;192080 192077 4 VGSPFELVVSGNKR SKTYIQLKTRDENIKVGSPFELVVSGNKRL KVGSPFELVVSGNKRLKELSYMVVSRGQLV K V G K R L 0 1 1 0 0 0 1 2 0 0 1 1 0 1 1 2 0 0 0 3 0 0 14 1 1487.8096 Q6YHK3 Q6YHK3 479 492 CD109 CD109 antigen yes yes 3 0.00026307 64.104 By MS/MS 1 0.93366 1.0569 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93366 1.0569 NaN 1 1 Median NaN NaN NaN 0 0 Median 5662200 3035200 2627000 0 0 0 0 0 0 0 0 0 0 0 0 5662200 3035200 2627000 0 0 0 35876 3193 37691 189121 192081 192081 1 VGSTAVQVTSAER NALKLAHKDTKVSIKVGSTAVQVTSAERTK IKVGSTAVQVTSAERTKVLGQSVFLNDIYY K V G E R T 2 1 0 0 0 1 1 1 0 0 0 0 0 0 0 2 2 0 0 3 0 0 13 0 1303.6732 P21359;H0Y465 P21359 1757 1769 NF1 Neurofibromin;Neurofibromin truncated yes no 2 5.1709E-07 107.24 By MS/MS 1 0.92572 0.77577 NaN 1 Median NaN NaN NaN 0 0 Median 0.92572 0.77577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1713800 923270 790540 0 0 0 1713800 923270 790540 0 0 0 0 0 0 0 0 0 0 0 0 35877 1147 37692 189122 192082;192083 192083 2 VGSTSENITQK ARDFLDEYIFLAVGRVGSTSENITQKVVWV AVGRVGSTSENITQKVVWVEESDKRSFLLD R V G Q K V 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 2 2 0 0 1 0 0 11 0 1162.583 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 407 417 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00048871 68.657 By matching By MS/MS By matching By matching By matching By MS/MS 1 2 2 1 1 2 1.1175 1.0047 17.35 9 Median 1.0528 1.0168 NaN 1 0 Median 1.1135 0.97267 4.5781 2 0 Median 1.296 1.3346 14.079 2 0 Median 1.0864 0.93119 NaN 1 0 Median 1.2881 1.3218 NaN 1 0 Median 1.1277 0.94498 7.5311 2 0 Median 16451000 7469300 8981900 2101400 1081300 1020100 7369600 3364700 4004900 3355400 1384500 1970800 320010 159450 160550 1201300 534180 667140 2103500 945180 1158300 35878 263 37693 189123;189124;189125;189126;189127;189128;189129;189130;189131 192084;192085;192086;192087;192088 192084 5 VGSTSQPTLETFQDLLHR SKALFSKAEEQLLSKVGSTSQPTLETFQDL TSQPTLETFQDLLHRHPDAFYLARTAKALQ K V G H R H 0 1 0 1 0 2 1 1 1 0 3 0 0 1 1 2 3 0 0 1 0 0 18 0 2028.0276 Q96EZ8;F8W126 Q96EZ8 220 237 MCRS1 Microspherule protein 1 yes no 3 1.5061E-06 72.634 By matching By MS/MS 1 1 0.67131 0.75293 31.994 2 Median NaN NaN NaN 0 0 Median 0.50068 0.60049 NaN 1 0 Median 0.9001 0.94408 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3557700 1887200 1670500 0 0 0 795060 558470 236590 2762600 1328700 1433900 0 0 0 0 0 0 0 0 0 35879 3646 37694 189132;189133 192089 192089 1 VGSVEEFQGQER LDRELRGLDDIKDLKVGSVEEFQGQERSVI DLKVGSVEEFQGQERSVILISTVRSSQSFV K V G E R S 0 1 0 0 0 2 3 2 0 0 0 0 0 1 0 1 0 0 0 2 0 0 12 0 1363.6368 Q9HCE1;Q5JR04 Q9HCE1 862 873 MOV10 Putative helicase MOV-10 yes no 2 7.8154E-06 121.83 By MS/MS 1 1.7962 1.5084 NaN 1 Median NaN NaN NaN 0 0 Median 1.7962 1.5084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6921900 2214700 4707200 0 0 0 6921900 2214700 4707200 0 0 0 0 0 0 0 0 0 0 0 0 35880 4029 37695 189134 192090 192090 1 VGSVLQEGCGK LSMQKSMQNHAAVFRVGSVLQEGCGKISKL AVFRVGSVLQEGCGKISKLYGDLKHLKTFD R V G G K I 0 0 0 0 1 1 1 3 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1132.5547 P31040;A0A087X1I3 P31040 528 538 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 1.1952E-05 156.92 By MS/MS 1 1.4907 1.2614 NaN 1 Median NaN NaN NaN 0 0 Median 1.4907 1.2614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5769200 2087500 3681700 0 0 0 5769200 2087500 3681700 0 0 0 0 0 0 0 0 0 0 0 0 35881 2200 37696 189135 192091;192092 192091 2 VGTAQLALVAR LGAHALLANGSVMSRVGTAQLALVARAHNV VMSRVGTAQLALVARAHNVPVLVCCETYKF R V G A R A 3 1 0 0 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1097.6557 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 415 425 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 2 0.00020977 99.802 By matching By matching By MS/MS By MS/MS 1 2 1 3 1.1694 1.012 20.577 7 Median 1.0369 0.98199 NaN 1 0 Median 1.0945 0.94953 9.0092 2 0 Median 1.6121 1.6516 NaN 1 0 Median 1.2743 1.0656 8.1702 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35300000 16416000 18884000 15824000 8075000 7749100 7032500 3292400 3740100 5961700 2371700 3590000 6481200 2676400 3804800 0 0 0 0 0 0 35882 16 37697 189136;189137;189138;189139;189140;189141;189142 192093;192094;192095;192096 192093 4 VGTDLLEEEITK GIRKLQIQCVVEDDKVGTDLLEEEITKFEE DDKVGTDLLEEEITKFEEHVQSVDIAAFNK K V G T K F 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 0 2 0 0 1 0 0 12 0 1345.6977 E9PRY8;H0YE72;H0YE58;P29692;E9PQZ1 P29692 254 265 EEF1D Elongation factor 1-delta no no 2 4.3444E-06 104.22 By MS/MS By matching 1 1 1.2557 1.1289 18.897 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.34 1.2903 NaN 1 0 Median 1.1767 0.9877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23423000 9933100 13489000 0 0 0 0 0 0 16082000 6690600 9391800 7340100 3242500 4097700 0 0 0 0 0 0 35883 985;2174 37698 189143;189144 192097;192098 192098 2 VGTFFSEVKPAGPTVEQQGEMAR KVSGHVITDIVEGKKVGTFFSEVKPAGPTV KPAGPTVEQQGEMARSGGRMLATLEPEQRA K V G A R S 2 1 0 0 0 2 3 3 0 0 0 1 1 2 2 1 2 0 0 3 0 0 23 1 2464.2057 P54886 P54886 349 371 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 7.7242E-35 130.05 By MS/MS By MS/MS By matching By matching 1 5 2 2 0.84833 0.89789 20.853 10 Median 0.71855 0.73977 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81498 0.90563 20.585 5 0 Median 0.99155 0.91781 4.3161 2 0 Median 1.0342 1.1056 32.133 2 0 Median NaN NaN NaN 0 0 Median 229240000 118890000 110350000 45599000 25740000 19859000 0 0 0 164540000 82896000 81643000 7487800 3742500 3745200 11618000 6514900 5103300 0 0 0 35884 2488 37699 189145;189146;189147;189148;189149;189150;189151;189152;189153;189154 192099;192100;192101;192102 192102 4 VGTHGGTLSSYIVK HKPEPPVAGPGRGGRVGTHGGTLSSYIVKN RVGTHGGTLSSYIVKNIALDKTDDSNPREA R V G V K N 0 0 0 0 0 0 0 3 1 1 1 1 0 0 0 2 2 0 1 2 0 0 14 0 1417.7565 Q9NW82 Q9NW82 577 590 WDR70 WD repeat-containing protein 70 yes yes 3 0.0032963 32.734 By matching By MS/MS 3 1 0.78291 0.70054 41.703 4 Median 0.70985 0.65578 49.281 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86349 0.74837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14133000 8048200 6084600 10260000 6287400 3972300 0 0 0 0 0 0 3873100 1760800 2112300 0 0 0 0 0 0 35885 4147 37700 189155;189156;189157;189158 192103;192104 192103 2 VGTIDDDPEYRK FQKAAKKKTKKRDTKVGTIDDDPEYRKFLE DTKVGTIDDDPEYRKFLESYATDNEKMTST K V G R K F 0 1 0 3 0 0 1 1 0 1 0 1 0 0 1 0 1 0 1 1 0 0 12 1 1406.6678 A0A087WYC8;Q9BZI7 A0A087WYC8 151 162 UPF3B Regulator of nonsense transcripts 3B yes no 3 0.006925 28.806 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.98637 0.9232 27.753 4 Median 0.79485 0.80556 NaN 1 0 Median 0.84315 0.77492 NaN 1 0 Median 1.2705 1.4087 NaN 1 0 Median 1.1539 1.058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6020700 2897600 3123200 2115600 992860 1122800 1719500 790220 929260 1042900 594070 448880 1142700 520410 622290 0 0 0 0 0 0 35886 80 37701 189159;189160;189161;189162 192105;192106;192107 192106 3 VGTLDVLVGLSDELAK NNLAVTSKFNIPDLKVGTLDVLVGLSDELA GTLDVLVGLSDELAKLDAFVEGVVKKVAQY K V G A K L 1 0 0 2 0 0 1 2 0 0 4 1 0 0 0 1 1 0 0 3 0 0 16 0 1627.9033 P21283 P21283 45 60 ATP6V1C1 V-type proton ATPase subunit C 1 yes yes 2 6.6184E-05 77.305 By MS/MS By matching 1 1 1.2523 1.2185 27.582 2 Median NaN NaN NaN 0 0 Median 1.1754 1.0026 NaN 1 0 Median 1.3341 1.4809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8394100 3863300 4530900 0 0 0 7691000 3574400 4116700 703100 288920 414180 0 0 0 0 0 0 0 0 0 35887 2087 37702 189163;189164 192108 192108 1 VGTLVGEDKYGNK LRGYLRVFFRTNDAKVGTLVGEDKYGNKYY AKVGTLVGEDKYGNKYYEDNKQFFGRHRWV K V G N K Y 0 0 1 1 0 0 1 3 0 0 1 2 0 0 0 0 1 0 1 2 0 0 13 1 1378.7092 Q9UI09;F8VRD8;H0YID5;H0YIT1 Q9UI09 35 47 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 3 0.03029 21.351 By matching By MS/MS By matching 1 1 2 0.89332 0.91347 33.872 4 Median 1.0045 1.0222 NaN 1 0 Median 1.8001 1.5912 NaN 1 0 Median 0.7494 0.77975 6.481 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4651100 2309900 2341200 1117500 539070 578430 931450 332450 599000 2602200 1438400 1163800 0 0 0 0 0 0 0 0 0 35888 4286 37703 189165;189166;189167;189168 192109 192109 1 VGTPLATEDSGR PAFSGEEAKAAKRPRVGTPLATEDSGRSQD RPRVGTPLATEDSGRSQDYVAFVESLLQVQ R V G G R S 1 1 0 1 0 0 1 2 0 0 1 0 0 0 1 1 2 0 0 1 0 0 12 0 1201.5939 A0A0C4DFL8;F5GX28;O94953 A0A0C4DFL8 1063 1074 KDM4B Lysine-specific demethylase 4B yes no 2 0.014078 35.445 By matching By MS/MS 1 1 4.9962 4.731 219.32 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25.614 22.308 NaN 1 0 Median 0.97452 1.0033 NaN 1 0 Median NaN NaN NaN 0 0 Median 18852000 8023200 10829000 0 0 0 0 0 0 0 0 0 2938200 82219 2856000 15914000 7940900 7973200 0 0 0 35889 228 37704 189169;189170 192110 192110 1 VGTSFSIPVVSDVR IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE KVGTSFSIPVVSDVRELVPSSDPIVFVVGA K V G V R E 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 3 1 0 0 4 0 0 14 0 1461.7827 Q92979;V9GYP5;A0A087WWQ2 Q92979 174 187 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 5.0227E-09 109.6 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1.0092 0.94521 25.347 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98445 0.94521 NaN 1 0 Median 1.0092 0.83661 NaN 1 0 Median 0.99657 1.0077 NaN 1 0 Median 1.5237 1.1945 40.256 2 0 Median 77355000 38274000 39081000 0 0 0 0 0 0 40479000 19684000 20795000 3278300 1588100 1690200 33154000 16842000 16312000 442930 159700 283230 35890 3571 37705 189171;189172;189173;189174;189175;189176 192111;192112;192113;192114;192115;192116;192117;192118;192119 192117 9 VGTVIGSNK DDKENRYWIFRSWGRVGTVIGSNKLEQMPS FRSWGRVGTVIGSNKLEQMPSKEDAIEHFM R V G N K L 0 0 1 0 0 0 0 2 0 1 0 1 0 0 0 1 1 0 0 2 0 0 9 0 873.49198 P09874 P09874 592 600 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0013564 82.426 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2772 1.1266 6.691 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.062 1.1518 NaN 1 0 Median 1.3519 1.1745 9.0147 2 0 Median NaN NaN NaN 0 0 Median 1.2946 1.075 NaN 1 0 Median 15804000 7304300 8499900 0 0 0 0 0 0 4554500 2251100 2303300 10194000 4591800 5602500 0 0 0 1055400 461320 594050 35891 1922 37706 189177;189178;189179;189180;189181 192120;192121;192122;192123;192124;192125;192126;192127 192125 8 VGTVIGSNKLEQMPSK DDKENRYWIFRSWGRVGTVIGSNKLEQMPS GTVIGSNKLEQMPSKEDAIEHFMKLYEEKT R V G S K E 0 0 1 0 0 1 1 2 0 1 1 2 1 0 1 2 1 0 0 2 0 0 16 1 1686.8975 P09874 P09874 592 607 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 3.1053E-11 121.79 By matching By MS/MS By MS/MS By matching By MS/MS 1 4 4 2 1 0.96386 1.0609 21.057 12 Median 0.98609 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91978 1.0609 13.071 4 2 Median 1.1042 1.0401 16.901 4 0 Median 0.76688 0.82968 48.937 2 0 Median 1.3366 1.2053 NaN 1 0 Median 114480000 58544000 55931000 3529200 1970000 1559200 0 0 0 79312000 41770000 37541000 24870000 11851000 13019000 4097000 1905500 2191600 2667000 1047600 1619400 35892 1922 37707;37708 189182;189183;189184;189185;189186;189187;189188;189189;189190;189191;189192;189193 192128;192129;192130;192131;192132;192133;192134;192135;192136 192132 704 9 VGTVIGSNKLEQMPSKEDAIEHFMK DDKENRYWIFRSWGRVGTVIGSNKLEQMPS EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF R V G M K L 1 0 1 1 0 1 3 2 1 2 1 3 2 1 1 2 1 0 0 2 0 0 25 2 2787.3935 P09874 P09874 592 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4;5 1.2168E-24 98.74 By MS/MS By MS/MS By matching By MS/MS By matching 2 15 2 3 2 0.87461 1.0336 22.808 24 Median 0.84502 0.8858 6.9574 2 1 Median NaN NaN NaN 0 0 Median 0.85631 1.0331 17.02 15 0 Median 1.0694 1.0951 17.581 2 0 Median 1.1606 1.2939 25.164 3 0 Median 1.5318 1.6643 25.162 2 0 Median 851760000 437650000 414110000 19253000 7892200 11361000 0 0 0 814140000 421080000 393060000 4051700 1734600 2317100 13263000 6483800 6779300 1052900 460730 592160 35893 1922 37709;37710;37711 189194;189195;189196;189197;189198;189199;189200;189201;189202;189203;189204;189205;189206;189207;189208;189209;189210;189211;189212;189213;189214;189215;189216;189217 192137;192138;192139;192140;192141;192142;192143;192144;192145;192146;192147;192148;192149;192150;192151;192152;192153;192154;192155;192156;192157;192158 192141 698;704 22 VGTVTMGPSAR ETRGTRYQYCDFLVKVGTVTMGPSARGISV FLVKVGTVTMGPSARGISVEVEYGPCVVAS K V G A R G 1 1 0 0 0 0 0 2 0 0 0 0 1 0 1 1 2 0 0 2 0 0 11 0 1074.5492 Q9H944;A6PVP4;B7ZBQ3 Q9H944 126 136 MED20 Mediator of RNA polymerase II transcription subunit 20 yes no 2 0.00099856 83.948 By MS/MS 1 1.0902 1.0436 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0902 1.0436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4267000 2069800 2197200 0 0 0 0 0 0 4267000 2069800 2197200 0 0 0 0 0 0 0 0 0 35894 3993 37712 189218 192159 192159 1 VGTYQLAIVAK VGADRVVANGDTANKVGTYQLAIVAKHHGI TANKVGTYQLAIVAKHHGIPFYVAAPSSSC K V G A K H 2 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 2 0 0 11 0 1161.6758 Q9BV20 Q9BV20 260 270 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2 0.00015521 109.11 By MS/MS By MS/MS 1 1 0.85444 0.75746 18.462 2 Median 0.93569 0.8631 NaN 1 0 Median 0.78024 0.66476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40997000 21266000 19730000 22989000 12378000 10611000 18008000 8888700 9119300 0 0 0 0 0 0 0 0 0 0 0 0 35895 3844 37713 189219;189220 192160;192161;192162;192163 192162 4 VGVASSEELAR ASTSRSLALMYESEKVGVASSEELARQRGV ESEKVGVASSEELARQRGVLERTEKMVDKM K V G A R Q 2 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1116.5775 O95721 O95721 73 83 SNAP29 Synaptosomal-associated protein 29 yes yes 2 0.00015337 93.111 By MS/MS By MS/MS By MS/MS 1 1 1 1.207 1.0039 13.983 3 Median 0.95679 0.89718 NaN 1 0 Median 1.207 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4178 1.1847 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14817000 6872100 7945100 6353800 3159700 3194100 6952000 3120200 3831700 0 0 0 1511400 592170 919220 0 0 0 0 0 0 35896 1788 37714 189221;189222;189223 192164;192165;192166 192164 3 VGVDPLIIPTDYWK TQEDWLVSVLPEGSRVGVDPLIIPTDYWKK RVGVDPLIIPTDYWKKMAKVLRSAGHHLIP R V G W K K 0 0 0 2 0 0 0 1 0 2 1 1 0 0 2 0 1 1 1 2 0 0 14 0 1614.8657 Q9NQW7;Q5T6H7;Q5T6H2;Q5T6H3 Q9NQW7 117 130 XPNPEP1 Xaa-Pro aminopeptidase 1 yes no 2 0.0029894 39.917 By MS/MS By MS/MS 2 1 0.86262 0.82777 12.954 3 Median 0.82006 0.7802 8.3697 2 0 Median 1.1023 0.95254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11028000 5922500 5105400 9168300 5095500 4072800 1859600 827010 1032600 0 0 0 0 0 0 0 0 0 0 0 0 35897 4070 37715 189224;189225;189226 192167;192168;192169 192168 3 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER EPDKTNKKEGEKTDRVGVEASEETPQTSSS TPSDHQSQEASQFERKDEPKTEQTEKAEEE R V G E R K 3 2 0 1 0 4 5 2 1 0 0 0 0 1 3 8 3 0 0 2 0 0 35 1 3702.663 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1 Q6Y7W6 362 396 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 4 0.0055465 20.572 By MS/MS 1 0.73147 0.78224 NaN 1 Median 0.73147 0.78224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6508100 3681300 2826800 6508100 3681300 2826800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35898 3192 37716 189227 192170;192171 192170 2 VGVEVPDVNIEGPEGK DVNLPKADVDISGPKVGVEVPDVNIEGPEG GVEVPDVNIEGPEGKLKGPKFKMPEMNIKA K V G G K L 0 0 1 1 0 0 3 3 0 1 0 1 0 0 2 0 0 0 0 4 0 0 16 0 1636.8308 Q09666 Q09666 913 928 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.6023E-10 107.09 By MS/MS By MS/MS By MS/MS 1 1 3 0.8379 0.75664 8.5852 5 Median 0.74916 0.75274 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8379 0.89164 NaN 1 0 Median 0.88999 0.75664 8.1357 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140430000 77932000 62498000 80507000 45271000 35236000 0 0 0 50951000 27958000 22993000 8971400 4702200 4269300 0 0 0 0 0 0 35899 2749 37717 189228;189229;189230;189231;189232 192172;192173;192174;192175;192176;192177;192178;192179;192180;192181 192175 10 VGVGHAGEWAR GPLEPSEPAVVAAARVGVGHAGEWARKPLR AAARVGVGHAGEWARKPLRFYVRGSPWVSV R V G A R K 2 1 0 0 0 0 1 3 1 0 0 0 0 0 0 0 0 1 0 2 0 0 11 0 1137.5679 P29372 P29372 262 272 MPG DNA-3-methyladenine glycosylase yes yes 2 0.00021866 74.173 By matching By MS/MS 1 1 1.085 0.98443 11.249 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0802 1.0659 NaN 1 0 Median 1.0899 0.90916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9925000 4492700 5432300 0 0 0 0 0 0 3207800 1572900 1634900 6717300 2919900 3797400 0 0 0 0 0 0 35900 2170 37718 189233;189234 192182 192182 1 VGVGTSFGLPQTR PDPATVKKVVNYLPRVGVGTSFGLPQTRRI PRVGVGTSFGLPQTRRISLASPRQLFKASN R V G T R R 0 1 0 0 0 1 0 3 0 0 1 0 0 1 1 1 2 0 0 2 0 0 13 0 1317.7041 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A3B3IU76 E9PEM5 2172 2184 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.00030676 77.593 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2073 1.032 12.086 5 Median 0.89979 0.87338 NaN 1 0 Median 1.3166 1.1246 12.145 2 0 Median 0.91878 1.0016 NaN 1 0 Median 1.2073 1.0468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40509000 19598000 20911000 28106000 14107000 13998000 8707700 3683500 5024200 3520100 1723300 1796800 175780 83883 91900 0 0 0 0 0 0 35901 470 37719 189235;189236;189237;189238;189239 192183;192184;192185;192186 192183 4 VGVIGFPNVGK KLLGGFQETCSKAIRVGVIGFPNVGKSSII KAIRVGVIGFPNVGKSSIINSLKQEQMCNV R V G G K S 0 0 1 0 0 0 0 3 0 1 0 1 0 1 1 0 0 0 0 3 0 0 11 0 1085.6233 Q9BVP2 Q9BVP2 257 267 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.0020699 55.531 By MS/MS By MS/MS By MS/MS By matching 1 1 4 2 0.91717 0.89611 7.2651 8 Median 1.0353 0.99576 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82298 0.85712 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87297 0.8694 8.6234 4 0 Median 1.1131 0.93343 2.2629 2 0 Median 33462000 17198000 16265000 3247600 1572500 1675000 0 0 0 6215500 3452400 2763000 0 0 0 21297000 10934000 10363000 2702300 1238700 1463600 35902 3858 37720 189240;189241;189242;189243;189244;189245;189246;189247 192187;192188;192189;192190;192191;192192;192193 192189 7 VGVKEELLAVGK TPTHTKQQLKASLGKVGVKEELLAVGKFTR LGKVGVKEELLAVGKFTRTSGETTHTHREP K V G G K F 1 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1240.7391 P46013 P46013 1032 1043 MKI67 Antigen KI-67 yes no 2;3 1.5379E-06 137.46 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 4 7 11 4 4 1.1036 1.1499 21.487 31 Median 0.88898 0.90493 NaN 1 0 Median 0.86636 0.83399 15.902 4 0 Median 1.2428 1.4424 15.144 7 0 Median 1.2487 1.2198 19.686 11 0 Median 1.1037 1.2355 5.4541 4 0 Median 1.1046 0.98571 4.4116 4 0 Median 271830000 126090000 145740000 2081400 932910 1148500 4390900 2317800 2073100 218830000 101700000 117120000 16769000 7091100 9678300 27561000 12985000 14577000 2200500 1057800 1142700 35903 2335 37721 189248;189249;189250;189251;189252;189253;189254;189255;189256;189257;189258;189259;189260;189261;189262;189263;189264;189265;189266;189267;189268;189269;189270;189271;189272;189273;189274;189275;189276;189277;189278 192194;192195;192196;192197;192198;192199;192200;192201;192202;192203;192204;192205;192206;192207;192208;192209;192210;192211;192212;192213;192214;192215;192216 192195 23 VGVKEEVLPVGK TPTSSKQRLKISLGKVGVKEEVLPVGKLTQ LGKVGVKEEVLPVGKLTQTSGKTTQTHRET K V G G K L 0 0 0 0 0 0 2 2 0 0 1 2 0 0 1 0 0 0 0 4 0 0 12 1 1252.7391 P46013 P46013 2006 2017 MKI67 Antigen KI-67 yes yes 2;3 0.00020172 85.807 By MS/MS By MS/MS By MS/MS By matching 4 7 2 2 0.95129 0.97661 15.385 15 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9823 1.1246 7.7005 4 0 Median 0.93479 0.89045 13.392 7 0 Median 0.91167 0.98141 10.444 2 1 Median 0.91304 0.82023 21.355 2 0 Median 126910000 64240000 62667000 0 0 0 0 0 0 94916000 48661000 46255000 14326000 6973900 7352400 16093000 7821900 8271200 1572000 783570 788400 35904 2335 37722 189279;189280;189281;189282;189283;189284;189285;189286;189287;189288;189289;189290;189291;189292;189293 192217;192218;192219;192220;192221;192222;192223;192224;192225;192226;192227;192228;192229;192230;192231 192229 15 VGVKPVGSDPDFQPELSGAGSR ______________________________ SDPDFQPELSGAGSRLAVVKFTMRGCGPCL M V G S R L 1 1 0 2 0 1 1 4 0 0 1 1 0 1 3 3 0 0 0 3 0 0 22 1 2198.0968 O43396;K7EPB7;K7EKG2 O43396 2 23 TXNL1 Thioredoxin-like protein 1 yes no 3 4.4415E-07 45.784 By MS/MS By matching 1 1 0.64959 0.63239 17.733 2 Median 0.71381 0.71687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59114 0.55786 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12456000 7698200 4757900 11556000 7149400 4406200 0 0 0 0 0 0 900500 548810 351680 0 0 0 0 0 0 35905 1570 37723 189294;189295 192232 192232 1 VGVLAASMEAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ PIAKVGVLAASMEAKASSQQEKEDKPAETK K V G A K A 3 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 0 2 0 0 11 0 1074.5743 Q9UHB6;F8VQE1;F8VS07 Q9UHB6 501 511 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.0001932 107.15 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 4 1 1.0938 0.94908 21.761 8 Median 1.4461 1.402 NaN 1 0 Median 0.74344 0.65082 NaN 1 0 Median 0.8266 0.90303 NaN 1 0 Median 1.0938 0.93315 9.1774 4 0 Median NaN NaN NaN 0 0 Median 1.2628 1.04 NaN 1 0 Median 25909000 12831000 13078000 3079200 1130300 1948900 2475200 1400900 1074300 9879800 5555400 4324300 7663500 3509500 4154000 0 0 0 2811500 1234700 1576800 35906 4273 37724 189296;189297;189298;189299;189300;189301;189302;189303;189304 192233;192234;192235;192236;192237;192238;192239;192240 192235 8 VGVNGFGR ______________________________ ______________________________ K V G G R I 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 804.42424 P04406 P04406 6 13 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 4.7882E-06 166.13 By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 4 1 2 1 0.99491 0.96755 80.327 11 Median 1.1298 1.0593 11.235 4 0 Median 1.3048 1.0848 30.1 3 0 Median 0.096754 0.10539 NaN 1 0 Median 0.40372 0.3219 53.254 2 1 Median 0.94936 0.96353 NaN 1 0 Median NaN NaN NaN 0 0 Median 153320000 73159000 80160000 79351000 37843000 41508000 66305000 29258000 37047000 3717700 3474000 243650 3009800 2119700 890100 934600 463480 471130 0 0 0 35907 1850 37725 189305;189306;189307;189308;189309;189310;189311;189312;189313;189314;189315;189316 192241;192242;192243;192244;192245;192246;192247;192248;192249;192250;192251 192242 11 VGVPSTMDLVK QLRYVEQKAGITFKRVGVPSTMDLVKSKSM TFKRVGVPSTMDLVKSKSMDAIRSLASVSY R V G V K S 0 0 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 0 0 3 0 0 11 0 1144.6162 Q9BQ39;A0A087WVC1 Q9BQ39 514 524 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.024675 68.846 By MS/MS By matching 1 1 1.128 1.0523 19.273 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89776 0.91825 NaN 1 0 Median 1.4172 1.206 NaN 1 0 Median 10592000 5527500 5064300 0 0 0 0 0 0 0 0 0 0 0 0 9854500 5213300 4641200 737380 314260 423120 35908 3781 37726 189317;189318 192252 192252 0 VGVPTVDLDAQGR KYSNMEQSLFTRFVRVGVPTVDLDAQGRAR VRVGVPTVDLDAQGRARASLCNLYNWRYKN R V G G R A 1 1 0 2 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1325.6939 O60306 O60306 1126 1138 AQR Intron-binding protein aquarius yes yes 2 3.031E-05 139.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 0.86438 0.76838 21.373 7 Median 0.64409 0.60476 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6989 0.76838 NaN 1 0 Median 0.86438 0.75922 NaN 1 1 Median 0.94994 0.99125 12.509 2 0 Median 0.89309 0.73886 26.975 2 1 Median 41707000 22476000 19231000 10226000 5490200 4735500 0 0 0 15889000 8860500 7028700 1409200 724880 684280 12655000 6578100 6076700 1527900 822510 705430 35909 1611 37727 189319;189320;189321;189322;189323;189324;189325 192253;192254;192255;192256;192257;192258;192259;192260 192258 8 VGVTEGCDPTR EVLYDEVAVPKSPFRVGVTEGCDPTRVRAF SPFRVGVTEGCDPTRVRAFGPGLEGGLVNK R V G T R V 0 1 0 1 1 0 1 2 0 0 0 0 0 0 1 0 2 0 0 2 0 0 11 0 1189.5397 Q14315 Q14315 1342 1352 FLNC Filamin-C yes yes 2 0.022458 34.206 By MS/MS 1 0.76553 0.65076 NaN 1 Median NaN NaN NaN 0 0 Median 0.76553 0.65076 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1231000 647650 583390 0 0 0 1231000 647650 583390 0 0 0 0 0 0 0 0 0 0 0 0 35910 2871 37728 189326 192261 192261 1 VGVWNVPYISNIYLIK YARSEDYVDIVQGRRVGVWNVPYISNIYLI GVWNVPYISNIYLIKGSALRGELQSSDLFH R V G I K G 0 0 2 0 0 0 0 1 0 3 1 1 0 0 1 1 0 1 2 3 0 0 16 0 1877.0451 Q02809 Q02809 443 458 PLOD1 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 yes yes 2 0.00010428 70.488 By MS/MS By matching 1 1 1.173 1.0287 2.6428 2 Median NaN NaN NaN 0 0 Median 1.1517 1.0097 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1946 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3820100 1632400 2187700 0 0 0 3736300 1594100 2142100 0 0 0 83812 38270 45542 0 0 0 0 0 0 35911 2702 37729 189327;189328 192262;192263 192263 2 VGWEQLLTTIAR IFDNKHTNYTMEHIRVGWEQLLTTIARTIN HIRVGWEQLLTTIARTINEVENQILTRDAK R V G A R T 1 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 2 1 0 1 0 0 12 0 1385.7667 O43707;F5GXS2;H7C144;P12814;H9KV75;H7C5W8;H0YJW3;H0YJ11 O43707 734 745 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2 4.456E-06 103.7 By MS/MS By MS/MS By matching By MS/MS By MS/MS 7 5 3 1 1 1.1988 1.0993 28.234 17 Median 1.2065 1.2174 6.0445 7 0 Median 1.0962 0.92662 17.799 5 1 Median 0.73135 0.75574 54.149 3 0 Median 1.0381 0.88148 NaN 1 0 Median 1.5087 1.5955 NaN 1 0 Median NaN NaN NaN 0 0 Median 168240000 77113000 91125000 111920000 49616000 62309000 47642000 23519000 24124000 401290 236460 164830 5120400 2534800 2585600 3150000 1207600 1942300 0 0 0 35912 1585;1983 37730 189329;189330;189331;189332;189333;189334;189335;189336;189337;189338;189339;189340;189341;189342;189343;189344;189345 192264;192265;192266;192267;192268;192269;192270;192271;192272;192273;192274;192275;192276;192277;192278;192279;192280;192281;192282 192267 19 VGWIFTDLVSEDTR AEVVDEIAAKLGLRKVGWIFTDLVSEDTRK KVGWIFTDLVSEDTRKGTVRYSRNKDTYFL K V G T R K 0 1 0 2 0 0 1 1 0 1 1 0 0 1 0 1 2 1 0 2 0 0 14 0 1636.8097 Q8TAT6 Q8TAT6 308 321 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.00081363 59.542 By matching By MS/MS 1 1 1.3047 1.2152 38.56 2 Median 0.92502 0.92521 NaN 1 0 Median 1.8402 1.5961 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3104800 1329200 1775600 261380 175430 85951 2843400 1153700 1689700 0 0 0 0 0 0 0 0 0 0 0 0 35913 3456 37731 189346;189347 192283;192284 192284 2 VGWSTMQASLDLGTDK KHYYEVSCHDQGLCRVGWSTMQASLDLGTD GWSTMQASLDLGTDKFGFGFGGTGKKSHNK R V G D K F 1 0 0 2 0 1 0 2 0 0 2 1 1 0 0 2 2 1 0 1 0 0 16 0 1707.8138 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 66 81 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00013888 74.76 By matching By MS/MS By MS/MS By matching By matching 1 2 1 2 1 1.1501 1.0489 9.5452 7 Median 1.1096 1.0858 NaN 1 0 Median 1.1567 1.0319 0.42614 2 0 Median 1.0707 1.1147 NaN 1 0 Median 1.3089 1.1371 11.415 2 0 Median NaN NaN NaN 0 0 Median 1.0664 0.89882 NaN 1 0 Median 14551000 6600800 7949800 2508800 1176600 1332200 2605800 1145100 1460700 6257200 2837600 3419600 2919100 1310900 1608200 0 0 0 259660 130540 129120 35914 135 37732;37733 189348;189349;189350;189351;189352;189353;189354 192285;192286;192287;192288 192286 70 4 VGYELKDEIER LAARVDSFHESTEGKVGYELKDEIERKFDK TEGKVGYELKDEIERKFDKWQEPPPVKQVK K V G E R K 0 1 0 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 1 1349.6827 Q8WWY3 Q8WWY3 316 326 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 2;3 4.7049E-05 147.95 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 1 5 3 1 2 1.1347 1.1764 42.754 15 Median 0.79329 0.81061 25.811 3 1 Median 1.5229 1.3912 NaN 1 0 Median 0.94268 1.0064 52.347 5 0 Median 1.2544 1.1771 12.405 3 0 Median 1.4925 1.5337 NaN 1 0 Median 1.7407 1.6763 50.077 2 0 Median 94814000 47066000 47748000 22210000 10348000 11863000 988830 463320 525510 50025000 27401000 22624000 9205200 3886500 5318700 6743600 3264600 3479000 5641400 1703300 3938200 35915 3513 37734 189355;189356;189357;189358;189359;189360;189361;189362;189363;189364;189365;189366;189367;189368;189369;189370 192289;192290;192291;192292;192293;192294;192295;192296;192297;192298 192293 10 VGYPFLR IQKDSCESNHNITCKVGYPFLRRGEMVTFK SNHNITCKVGYPFLRRGEMVTFKILFQFNT K V G L R R 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 850.47012 P56199 P56199 888 894 ITGA1 Integrin alpha-1 yes yes 2 0.052362 39.021 By MS/MS 1 0.7203 0.70792 NaN 1 Median 0.7203 0.70792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3102400 1805000 1297300 3102400 1805000 1297300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35916 2509 37735 189371 192299 192299 1 VGYTPDWIFLLR AETGQVQKIVLYAKKVGYTPDWIFLLRNVM AKKVGYTPDWIFLLRNVMRISPDQGQQFAQ K V G L R N 0 1 0 1 0 0 0 1 0 1 2 0 0 1 1 0 1 1 1 1 0 0 12 0 1478.7922 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 512 523 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 7.8145E-05 93.111 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 4 1 1 1.0729 0.98969 9.8795 11 Median 1.0814 1.0564 5.7406 3 0 Median 1.1941 0.98886 3.3648 2 0 Median 0.81532 0.89076 2.1066 4 0 Linear 1.2387 1.094 NaN 1 0 Median 0.97956 0.98969 NaN 1 0 Median NaN NaN NaN 0 0 Median 128820000 59810000 69009000 58617000 27272000 31346000 57953000 25957000 31997000 11244000 6125400 5118200 910060 413380 496690 94577 42339 52238 0 0 0 35917 44 37736 189372;189373;189374;189375;189376;189377;189378;189379;189380;189381;189382 192300;192301;192302;192303;192304;192305;192306;192307;192308;192309;192310;192311;192312 192308 13 VGYYTIPSMDDLAK NNSYHMHPAGIILTKVGYYTIPSMDDLAKI KVGYYTIPSMDDLAKITNEKGECIVSDFTI K V G A K I 1 0 0 2 0 0 0 1 0 1 1 1 1 0 1 1 1 0 2 1 0 0 14 0 1571.7541 P52948;A0A3B3ITD8 P52948 739 752 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 2 0.0003072 73.781 By matching By MS/MS By matching By matching By matching 2 2 3 2 1 0.92661 0.90044 31.157 10 Median 0.89602 0.86871 4.4581 2 0 Median NaN NaN NaN 0 0 Median 1.3284 1.4112 59.879 2 0 Median 1.0567 0.90438 8.1094 3 0 Median 0.82758 0.83639 15.297 2 0 Median 0.80986 0.67954 NaN 1 0 Median 41130000 20274000 20857000 7962000 3808200 4153800 0 0 0 27627000 13775000 13852000 2379400 1076400 1303000 2857900 1456200 1401700 303960 158100 145860 35918 2462 37737 189383;189384;189385;189386;189387;189388;189389;189390;189391;189392 192313;192314 192314 2 VGYYVNNEYLNPELR VVLITCTYHGQEFIRVGYYVNNEYLNPELR VGYYVNNEYLNPELRENPPMKPDFSQLQRN R V G L R E 0 1 3 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 3 2 0 0 15 0 1841.8948 Q9NVP2;K7ELW9 Q9NVP2 109 123 ASF1B Histone chaperone ASF1B yes no 2 0.00013168 78.653 By matching By MS/MS By MS/MS 1 2 1 0.86647 0.76311 12.626 4 Median 0.55503 0.64365 NaN 1 0 Median 0.91126 0.76311 9.8625 2 1 Median 0.88955 0.84462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17062000 8940500 8121800 12915000 6629000 6285900 1254600 674030 580570 2892700 1637400 1255300 0 0 0 0 0 0 0 0 0 35919 4138 37738 189393;189394;189395;189396 192315;192316;192317 192315 3 VGYYVNNEYTETELR VVLITCTYRGQEFIRVGYYVNNEYTETELR VGYYVNNEYTETELRENPPVKPDFSKLQRN R V G L R E 0 1 2 0 0 0 3 1 0 0 1 0 0 0 0 0 2 0 3 2 0 0 15 0 1848.853 Q9Y294 Q9Y294 109 123 ASF1A Histone chaperone ASF1A yes yes 2 6.0092E-10 113.47 By MS/MS 2 0.88616 0.85009 4.6651 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88616 0.85009 4.6651 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11895000 5838400 6057000 0 0 0 0 0 0 11895000 5838400 6057000 0 0 0 0 0 0 0 0 0 35920 4381 37739 189397;189398 192318;192319 192319 2 VHAEAFSRPLSR ______________________________ ______________________________ M V H S R N 2 2 0 0 0 0 1 0 1 0 1 0 0 1 1 2 0 0 0 1 0 0 12 1 1368.7262 Q8NBU5 Q8NBU5 2 13 ATAD1 ATPase family AAA domain-containing protein 1 yes yes 3 0.0092102 28.903 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1692 1.0292 23.256 5 Median 0.9899 1.0142 23.494 2 0 Median 0.84837 0.71972 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1692 1.0292 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4286 1.2565 NaN 1 0 Median 7102500 3508400 3594100 3891400 2111900 1779500 944260 422780 521480 0 0 0 1021400 488260 533180 0 0 0 1245400 485480 759910 35921 3412 37740 189399;189400;189401;189402;189403 192320;192321;192322 192320 3 VHAENGELVAEGAK YQVLHACKDIGAIARVHAENGELVAEGAKE RVHAENGELVAEGAKEALDLGITGPEGIEI R V H A K E 3 0 1 0 0 0 3 2 1 0 1 1 0 0 0 0 0 0 0 2 0 0 14 0 1422.7103 Q9BPU6 Q9BPU6 190 203 DPYSL5 Dihydropyrimidinase-related protein 5 yes yes 2;3 9.1178E-05 70.889 By MS/MS By MS/MS 2 4 1.1056 0.94626 18.899 5 Median 0.79787 0.76886 10.851 2 2 Median 1.1513 0.99158 11.443 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14708000 7113200 7594900 5205600 2868100 2337500 9502600 4245200 5257400 0 0 0 0 0 0 0 0 0 0 0 0 35922 3776 37741 189404;189405;189406;189407;189408;189409 192323;192324;192325;192326;192327;192328 192327 6 VHAFLEQWGLVNYQVDPESR ACRRNLTGDVCAVMRVHAFLEQWGLVNYQV EQWGLVNYQVDPESRPMAMGPPPTPHFNVL R V H S R P 1 1 1 1 0 2 2 1 1 0 2 0 0 1 1 1 0 1 1 3 0 0 20 0 2386.1706 Q92922 Q92922 525 544 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3 2.4382E-07 52.784 By MS/MS By matching 1 1 0.87129 0.85919 8.7889 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73977 0.80742 NaN 1 0 Median 1.0262 0.91428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2052300 1153100 899230 0 0 0 0 0 0 1959300 1109800 849420 93028 43222 49807 0 0 0 0 0 0 35923 3567 37742 189410;189411 192329;192330 192329 2 VHAIPLR QDGKLIIWDSYTTNKVHAIPLRSSWVMTCA WDSYTTNKVHAIPLRSSWVMTCAYAPSGNY K V H L R S 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 1 0 0 7 0 804.49701 E7EP32;P62879;C9JIS1;C9JXA5;C9JZN1;F5H8J8;F5H100;F5H0S8;E9PCP0;P16520;P62873;F6UT28;B1AKQ8;F6X3N5 P62873 90 96 GNB2;GNB3;GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.0098565 83.229 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 3 2 1.0331 0.9599 12.334 10 Median 0.89537 0.83846 NaN 1 0 Median 1.1075 0.92825 6.0023 2 0 Median 1.0529 1.0411 NaN 1 0 Median 1.1493 0.9588 NaN 1 0 Median 0.9718 1.007 3.3181 3 0 Plateau 0.9718 0.80842 24.452 2 0 Median 43891000 21921000 21970000 13591000 7114300 6476900 9249400 4705200 4544200 3906600 1791800 2114800 7904500 3731600 4172800 7490900 3689400 3801500 1748500 888780 859700 35924 2603;867 37743 189412;189413;189414;189415;189416;189417;189418;189419;189420;189421 192331;192332;192333;192334;192335;192336;192337;192338;192339;192340;192341;192342;192343;192344;192345 192336 15 VHAPGLNLSGVGGK PSLKGDLDASVPSMKVHAPGLNLSGVGGKM KVHAPGLNLSGVGGKMQVGGDGVKVPGIDA K V H G K M 1 0 1 0 0 0 0 4 1 0 2 1 0 0 1 1 0 0 0 2 0 0 14 0 1304.7201 Q09666 Q09666 5324 5337 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 1.874E-05 128.81 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 6 2 2 1.1164 1.0604 15.909 21 Median 0.98914 0.99657 4.5198 3 1 Plateau 1.1239 0.96615 20.663 3 0 Median 1.1372 1.2294 9.8297 5 0 Median 1.0709 1.0235 6.7568 6 2 Median 1.2603 1.32 13.239 2 0 Median 1.1568 0.97812 11.418 2 0 Median 261880000 118960000 142930000 58291000 27117000 31175000 18598000 8101900 10496000 119520000 53738000 65780000 51204000 24101000 27103000 12038000 4906200 7132200 2233500 991120 1242400 35925 2749 37744 189422;189423;189424;189425;189426;189427;189428;189429;189430;189431;189432;189433;189434;189435;189436;189437;189438;189439;189440;189441;189442 192346;192347;192348;192349;192350;192351;192352;192353;192354;192355;192356;192357;192358;192359;192360;192361;192362;192363;192364;192365;192366;192367;192368;192369 192362 24 VHAQVQQFLK NVREQASRYATVSERVHAQVQQFLKEGYLR TVSERVHAQVQQFLKEGYLREEMVLDNIPK R V H L K E 1 0 0 0 0 3 0 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 10 0 1196.6666 Q12768;E7EQI7 Q12768 337 346 KIAA0196 WASH complex subunit strumpellin yes no 2 0.0018167 62.464 By MS/MS 1 1.8752 1.6049 NaN 1 Median NaN NaN NaN 0 0 Median 1.8752 1.6049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4753900 1373900 3380000 0 0 0 4753900 1373900 3380000 0 0 0 0 0 0 0 0 0 0 0 0 35926 878 37745 189443 192370;192371 192370 2 VHAYIISSLKK LRKLNDLIKRARLAKVHAYIISSLKKEMPN RLAKVHAYIISSLKKEMPNVFGKESKKKEL K V H K K E 1 0 0 0 0 0 0 0 1 2 1 2 0 0 0 2 0 0 1 1 0 0 11 1 1257.7445 A0A024R571;Q9H4M9;C9JC03;C9J2Z4 A0A024R571 320 330 EHD1 EH domain-containing protein 1 no no 2;3 0.00052601 54.784 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 1 2 1 2 1.3025 1.3386 37.483 11 Median 1.2204 1.1472 5.5953 2 0 Median 1.4607 1.377 20.378 3 0 Median 1.2774 1.3386 NaN 1 0 Median 1.6432 1.5786 1.6096 2 0 Median 3.6603 3.905 NaN 1 0 Median 1.2256 1.0923 8.6131 2 0 Median 53058000 22220000 30839000 21039000 10006000 11034000 6296800 2648100 3648700 4137500 1718600 2418900 4003800 1378300 2625600 5145200 1167100 3978100 12435000 5301800 7133500 35927 5 37746 189444;189445;189446;189447;189448;189449;189450;189451;189452;189453;189454 192372;192373;192374;192375;192376;192377;192378;192379;192380;192381;192382 192372 10 VHDLALR DVLSGTRMDLGECLKVHDLALRADYEIASK MDLGECLKVHDLALRADYEIASKEQDFFFE K V H L R A 1 1 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 822.47119 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 128 134 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 0.024355 55.604 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.9923 0.98855 16.344 4 Median 1.0042 0.99064 NaN 1 0 Median 0.90873 0.7726 NaN 1 0 Median 0.98057 0.98646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3363 1.1459 NaN 1 0 Median 9836200 4749700 5086600 1129700 615170 514570 4190100 1900000 2290100 3187400 1606900 1580500 0 0 0 0 0 0 1329000 627600 701350 35928 206;4407 37747 189455;189456;189457;189458 192383;192384;192385;192386 192384 4 VHDYDMR GHHPVPHEARYRDKRVHDYDMRVDDFLRRT EARYRDKRVHDYDMRVDDFLRRTQAVVSGR R V H M R V 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 7 0 934.3967 Q96MU7;J3QR07 Q96MU7 653 659 YTHDC1 YTH domain-containing protein 1 yes no 2 0.044246 43 By MS/MS 1 1.0187 1.0866 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0187 1.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median 1102500 516140 586390 0 0 0 0 0 0 0 0 0 0 0 0 1102500 516140 586390 0 0 0 35929 1347 37748 189459 192387;192388 192388 2 VHEENTTIEELEALGESLGK GGQEPGEEDTQNDLKVHEENTTIEELEALG TTIEELEALGESLGKGDDH___________ K V H G K G 1 0 1 0 0 0 6 2 1 1 3 1 0 0 0 1 2 0 0 1 0 0 20 0 2197.075 Q5T9P8;Q5T9P7;Q99633;M0R3G1 Q5T9P8 144 163 PRPF18 Pre-mRNA-splicing factor 18 yes no 3 2.8379E-06 48.656 By MS/MS By MS/MS 1 1 1.0129 0.97821 8.5521 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93125 1.0392 NaN 1 0 Median 1.1017 0.92081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1882200 945320 936880 0 0 0 0 0 0 1312500 696490 616060 569660 248830 320830 0 0 0 0 0 0 35930 3099 37749 189460;189461 192389;192390 192390 2 VHELNEEIGK TQEEISAEVAAKAERVHELNEEIGKLLAKV AKAERVHELNEEIGKLLAKVEQLGAEGNVE R V H G K L 0 0 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1166.5932 A0A0A6YYJ8;Q9NQ29;A8MYV2;B8ZZ10;B8ZZ09;Q9Y383 A0A0A6YYJ8 192 201 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.00036109 96.143 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 4 2 1 1.0499 0.94911 29.558 14 Median 1.0189 0.97819 6.0772 2 0 Median 1.2544 1.0754 5.7724 2 0 Median 0.97434 1.0371 14.089 3 0 Median 1.085 0.94828 44.973 4 2 Median 0.80819 0.7887 25.747 2 0 Median 0.792 0.65029 NaN 1 0 Median 48428000 24022000 24406000 6740500 3218100 3522500 6376700 2779000 3597700 13116000 6648600 6467600 5536700 2378700 3157900 14040000 7609100 6430600 2618700 1388900 1229900 35931 206;4407;4058 37750 189462;189463;189464;189465;189466;189467;189468;189469;189470;189471;189472;189473;189474;189475 192391;192392;192393;192394;192395;192396;192397;192398;192399;192400 192396 10 VHELQGNAPSDPDAVSAEEALK HVKKTTPELEIVLQKVHELQGNAPSDPDAV APSDPDAVSAEEALKYLLHLVDVNELYDHS K V H L K Y 4 0 1 2 0 1 3 1 1 0 2 1 0 0 2 2 0 0 0 2 0 0 22 0 2276.0921 O95163;F5H2T0 O95163 858 879 IKBKAP Elongator complex protein 1 yes no 3 8.927E-15 92.336 By MS/MS By matching 3 1 0.95544 0.87479 17.151 4 Median 0.97797 0.94344 20.075 3 0 Median 0.93344 0.81114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40735000 22444000 18291000 37658000 20964000 16695000 3076400 1480400 1596000 0 0 0 0 0 0 0 0 0 0 0 0 35932 1749 37751 189476;189477;189478;189479 192401;192402;192403;192404 192401 4 VHEYNVLLETLSR ELDKLWREFLHHKEKVHEYNVLLETLSRTE EKVHEYNVLLETLSRTEEIHENVISPSDLS K V H S R T 0 1 1 0 0 0 2 0 1 0 3 0 0 0 0 1 1 0 1 2 0 0 13 0 1571.8308 P30533;A0A3B3IRQ7 P30533 183 195 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes no 2;3 0.00039064 70.977 By MS/MS By MS/MS By matching 2 3 2 1.3334 1.3231 8.9378 7 Median 1.257 1.2584 2.4957 2 0 Median NaN NaN NaN 0 0 Median 1.3334 1.4515 3.7692 3 0 Median 1.4293 1.2629 6.5814 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23494000 9642800 13852000 8097700 3403200 4694500 0 0 0 13093000 5376000 7716800 2303900 863550 1440400 0 0 0 0 0 0 35933 2196 37752 189480;189481;189482;189483;189484;189485;189486 192405;192406;192407;192408;192409 192406 5 VHFEESSK FYRDIISIAEDEDLRVHFEESSKLEDLLRK AEDEDLRVHFEESSKLEDLLRKVRAKETRK R V H S K L 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 2 0 0 0 1 0 0 8 0 961.45051 P12956;B1AHC9 P12956 231 238 XRCC6 X-ray repair cross-complementing protein 6 yes no 2 0.018884 47.574 By MS/MS 1 1.6253 1.4027 NaN 1 Median NaN NaN NaN 0 0 Median 1.6253 1.4027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1315400 591820 723600 0 0 0 1315400 591820 723600 0 0 0 0 0 0 0 0 0 0 0 0 35934 1985 37753 189487 192410;192411 192411 2 VHFEESSKLEDLLR FYRDIISIAEDEDLRVHFEESSKLEDLLRK RVHFEESSKLEDLLRKVRAKETRKRALSRL R V H L R K 0 1 0 1 0 0 3 0 1 0 3 1 0 1 0 2 0 0 0 1 0 0 14 1 1700.8733 P12956;B1AHC9 P12956 231 244 XRCC6 X-ray repair cross-complementing protein 6 yes no 3;4 0.00022521 61.375 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.3014 1.1887 11.429 7 Median 1.2248 1.2344 18.116 2 0 Median 1.361 1.2484 6.9344 2 0 Median 0.99075 1.0532 1.272 2 0 Median 1.3772 1.2628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70444000 34239000 36206000 17361000 7952200 9408800 8147000 3593600 4553400 40761000 20978000 19782000 4175700 1714600 2461100 0 0 0 0 0 0 35935 1985 37754 189488;189489;189490;189491;189492;189493;189494 192412;192413;192414;192415;192416;192417;192418;192419 192415 8 VHFITDTLSK KQPKLLHQVVEQLQKVHFITDTLSKGETKF EQLQKVHFITDTLSKGETKFMGVCQLPSKN K V H S K G 0 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1159.6237 P06746;E7EW18;H0YBX1;H0YAV8 P06746 221 230 POLB DNA polymerase beta yes no 2 0.0013065 66.692 By MS/MS By MS/MS 1 1 1.146 1.0733 6.2977 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99116 1.0266 NaN 1 0 Median 1.3249 1.1222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12510000 5879200 6630400 0 0 0 0 0 0 9247500 4549500 4698000 3262200 1329800 1932400 0 0 0 0 0 0 35936 1876 37755 189495;189496 192420;192421;192422;192423 192421 4 VHFTAER GANLSVLLVEHALSKVHFTAERSSYYKSLL LVEHALSKVHFTAERSSYYKSLLSAEEAAK K V H E R S 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 7 0 858.4348 Q7KZF4 Q7KZF4 630 636 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.013187 76.847 By MS/MS By matching 2 1 1.3829 1.2883 6.8211 3 Median NaN NaN NaN 0 0 Median 1.4294 1.2361 9.0342 2 0 Median 1.2185 1.2883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9751600 4175600 5576000 0 0 0 9182700 3923500 5259200 568890 252120 316770 0 0 0 0 0 0 0 0 0 35937 3214 37756 189497;189498;189499 192424;192425;192426 192425 3 VHGGTTADMIYSR LRRGGTNADTIKLVKVHGGTTADMIYSRVR VKVHGGTTADMIYSRVREAENVAFANKDQH K V H S R V 1 1 0 1 0 0 0 2 1 1 0 0 1 0 0 1 2 0 1 1 0 0 13 0 1406.6612 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2500 2512 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2;3 1.2439E-05 96.015 By MS/MS By MS/MS 2 1 0.93898 0.95012 14.795 3 Median 0.92644 0.93716 1.9415 2 0 Median 1.4698 1.2096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14038000 6701500 7336800 6057600 3390200 2667400 7980800 3311300 4669400 0 0 0 0 0 0 0 0 0 0 0 0 35938 189 37757 189500;189501;189502 192427;192428;192429;192430;192431 192430 5 VHGPGIQSGTTNKPNK FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN HGPGIQSGTTNKPNKFTVETRGAGTGGLGL R V H N K F 0 0 2 0 0 1 0 3 1 1 0 2 0 0 2 1 2 0 0 1 0 0 16 1 1633.8536 P21333;Q60FE5;A0A087WWY3 P21333 1360 1375 FLNA Filamin-A no no 3;4 5.9779E-11 108.58 By MS/MS By MS/MS By matching By matching By matching 4 4 2 1 1 0.7544 0.74055 17.024 12 Median 0.81228 0.86221 2.3165 4 0 Median 0.72219 0.69508 5.4054 4 0 Median NaN NaN NaN 0 0 Median 0.69726 0.70837 1.9226 2 0 Median 1.0414 1.082 NaN 1 0 Median 0.62833 0.5607 NaN 1 0 Median 14057000 7742100 6314500 1926900 1008700 918220 11555000 6450000 5104600 0 0 0 186340 82838 103500 197810 109290 88525 190910 91227 99685 35939 2088;3120 37758 189503;189504;189505;189506;189507;189508;189509;189510;189511;189512;189513;189514 192432;192433;192434;192435;192436;192437;192438;192439;192440;192441;192442 192439 11 VHGPGIQSGTTNKPNKFTVETR FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN SGTTNKPNKFTVETRGAGTGGLGLAVEGPS R V H T R G 0 1 2 0 0 1 1 3 1 1 0 2 0 1 2 1 4 0 0 2 0 0 22 2 2367.2295 P21333;Q60FE5;A0A087WWY3 P21333 1360 1381 FLNA Filamin-A no no 3;4;5 1.6618E-26 125.09 By MS/MS By MS/MS By MS/MS By MS/MS 6 3 4 3 0.83198 0.92519 33.755 16 Median 0.83754 0.91094 4.2346 6 0 Median 0.70019 0.74597 49.791 3 1 Plateau 0.81329 1.0769 12.224 4 0 Median NaN NaN NaN 0 0 Median 0.94798 1.1145 25.94 3 0 Plateau NaN NaN NaN 0 0 Median 139390000 74808000 64579000 93829000 49331000 44497000 14836000 9600500 5235600 22572000 11804000 10768000 0 0 0 8149900 4072000 4078000 0 0 0 35940 2088;3120 37759 189515;189516;189517;189518;189519;189520;189521;189522;189523;189524;189525;189526;189527;189528;189529;189530 192443;192444;192445;192446;192447;192448;192449;192450;192451;192452;192453;192454;192455;192456;192457;192458;192459;192460;192461;192462;192463;192464;192465;192466;192467;192468;192469 192446 26 VHIDIGADGR ENDIANFFSPLNPIRVHIDIGADGRATGEA LNPIRVHIDIGADGRATGEADVEFVTHEDA R V H G R A 1 1 0 2 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1051.5411 P31942 P31942 223 232 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 1.5895E-07 166.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 4 4 1.1222 0.9741 19.907 15 Median 1.1511 1.1108 NaN 1 1 Median 1.4438 1.2252 22.611 2 0 Median 0.84751 0.80742 28.945 2 0 Median 1.235 1.0371 5.9595 2 0 Median 0.91978 0.94983 20.77 4 0 Median 1.1528 0.91437 8.1974 4 0 Median 476640000 226620000 250020000 2418900 1038700 1380200 26223000 9442300 16781000 79791000 38644000 41147000 38874000 17065000 21810000 268600000 133840000 134760000 60732000 26591000 34141000 35941 2208 37760 189531;189532;189533;189534;189535;189536;189537;189538;189539;189540;189541;189542;189543;189544;189545 192470;192471;192472;192473;192474;192475;192476;192477;192478;192479;192480;192481;192482;192483;192484;192485;192486;192487;192488;192489;192490;192491;192492;192493;192494;192495;192496;192497;192498;192499;192500;192501;192502;192503;192504 192472 34 VHIEIGPDGR ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA LNPVRVHIEIGPDGRVTGEADVEFATHEDA R V H G R V 0 1 0 1 0 0 1 2 1 2 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 P52597;P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;P55795 P31943 317 326 HNRNPF;HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2 2.404E-07 164.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 6 8 11 11 1.0145 0.89896 14.633 42 Median 0.84343 0.80458 8.7426 4 3 Median 1.158 0.9902 10.879 4 2 Median 0.85049 0.82393 17.969 6 1 Median 1.117 0.94658 18.27 7 1 Median 0.88552 0.90611 9.9605 10 3 Median 1.0958 0.89714 14.578 11 2 Median 1708800000 856750000 852050000 74411000 38035000 36376000 53977000 23857000 30119000 266390000 137950000 128440000 242640000 116530000 126100000 813020000 422060000 390960000 258370000 118320000 140050000 35942 1136;2452;2502 37761 189546;189547;189548;189549;189550;189551;189552;189553;189554;189555;189556;189557;189558;189559;189560;189561;189562;189563;189564;189565;189566;189567;189568;189569;189570;189571;189572;189573;189574;189575;189576;189577;189578;189579;189580;189581;189582;189583;189584;189585;189586;189587;189588;189589;189590;189591;189592 192505;192506;192507;192508;192509;192510;192511;192512;192513;192514;192515;192516;192517;192518;192519;192520;192521;192522;192523;192524;192525;192526;192527;192528;192529;192530;192531;192532;192533;192534;192535;192536;192537;192538;192539;192540;192541;192542;192543;192544;192545;192546;192547;192548;192549;192550;192551;192552;192553;192554;192555;192556;192557;192558;192559;192560;192561;192562;192563;192564;192565;192566;192567;192568;192569;192570;192571;192572;192573;192574;192575;192576;192577;192578;192579;192580;192581;192582;192583;192584;192585;192586;192587;192588;192589;192590;192591;192592;192593;192594;192595;192596;192597;192598;192599 192575 95 VHIGQVIMSIR GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ TVARVHIGQVIMSIRTKLQNKEHVIEALRR R V H I R T 0 1 0 0 0 1 0 1 1 3 0 0 1 0 0 1 0 0 0 2 0 0 11 0 1251.7122 F8W7C6;A0A087WV22;P27635;X1WI28;H7C123;H7C2C5;Q96L21 F8W7C6 78 88 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2;3 4.4658E-05 150.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 4 7 5 1.2362 1.1568 17.643 26 Median 1.1859 1.1297 6.2886 5 0 Median 1.2362 1.0426 21.348 6 0 Median 1.1102 1.0665 6.0982 4 2 Median NaN NaN NaN 0 0 Median 1.2819 1.3195 10.287 7 0 Median 1.5001 1.2051 29.974 4 0 Median 1048300000 475300000 572960000 768460000 352140000 416320000 64779000 28941000 35838000 27082000 14185000 12897000 0 0 0 115340000 48715000 66621000 72611000 31326000 41285000 35943 1084 37762;37763 189593;189594;189595;189596;189597;189598;189599;189600;189601;189602;189603;189604;189605;189606;189607;189608;189609;189610;189611;189612;189613;189614;189615;189616;189617;189618;189619 192600;192601;192602;192603;192604;192605;192606;192607;192608;192609;192610;192611;192612;192613;192614;192615;192616;192617;192618;192619;192620;192621;192622;192623;192624;192625;192626;192627;192628;192629;192630;192631;192632;192633;192634;192635;192636 192616 367 37 VHILDTESFETTFGPK PMSLLHDRIRPHNLKVHILDTESFETTFGP HILDTESFETTFGPKSQRKRPNLFASDMQS K V H P K S 0 0 0 1 0 0 2 1 1 1 1 1 0 2 1 1 3 0 0 1 0 0 16 0 1819.8992 Q13823 Q13823 132 147 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 0.00024367 40.801 By MS/MS 1 0.57662 0.59595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57662 0.59595 NaN 1 0 Median NaN NaN NaN 0 0 Median 4785100 3223300 1561800 0 0 0 0 0 0 0 0 0 0 0 0 4785100 3223300 1561800 0 0 0 35944 2839 37764 189620 192637;192638 192637 2 VHILGSFQNIK IENVTRTRIVLADVKVHILGSFQNIKMART ADVKVHILGSFQNIKMARTAICNLILGNPP K V H I K M 0 0 1 0 0 1 0 1 1 2 1 1 0 1 0 1 0 0 0 1 0 0 11 0 1254.7085 Q9NRX1 Q9NRX1 209 219 PNO1 RNA-binding protein PNO1 yes yes 2;3 0.0017177 46.39 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 2 3 1.2055 1.149 51.93 11 Median 1.2055 1.149 NaN 1 0 Median 1.7598 1.5681 NaN 1 0 Median 1.6049 1.5344 26.914 3 0 Median 0.93185 0.79691 NaN 1 0 Median 1.2754 1.3013 12.223 2 0 Median 1.068 0.89164 73.457 3 0 Median 30433000 14374000 16059000 5233500 2637200 2596400 378050 131110 246930 8572400 3553300 5019100 603560 331740 271820 11907000 5841900 6065600 3738200 1878600 1859600 35945 4091 37765 189621;189622;189623;189624;189625;189626;189627;189628;189629;189630;189631 192639;192640;192641 192641 3 VHILYVGSMPLK IVTCKVSSINSRFAKVHILYVGSMPLKNSF FAKVHILYVGSMPLKNSFRGTIRKEDVRAT K V H L K N 0 0 0 0 0 0 0 1 1 1 2 1 1 0 1 1 0 0 1 2 0 0 12 0 1355.7635 Q9Y3B2;B1AMU3;R4GNH9;R4GMQ7;B1AMU4 Q9Y3B2 85 96 EXOSC1 Exosome complex component CSL4 yes no 2;3 0.00014263 88.496 By MS/MS By MS/MS By matching By matching 3 2 2 1 1.044 1.0384 99.271 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1023 1.0484 39.381 3 0 Median 0.36484 0.30205 183.44 2 1 Median 0.86031 0.95579 10.379 2 0 Median 2.5633 2.1344 NaN 1 0 Median 66192000 48649000 17543000 0 0 0 0 0 0 25817000 10819000 14998000 39064000 37290000 1774000 850030 414450 435590 461160 126350 334820 35946 4414 37766;37767 189632;189633;189634;189635;189636;189637;189638;189639 192642;192643;192644;192645;192646;192647 192645 1971 6 VHIYHHTGNNTFR NKKWVPAGGSTGFSRVHIYHHTGNNTFRVV SRVHIYHHTGNNTFRVVGRKIQDHQVVINC R V H F R V 0 1 2 0 0 0 0 1 3 1 0 0 0 1 0 0 2 0 1 1 0 0 13 0 1594.7753 A0A0U1RRM6;Q8N8S7;A0A075B6E5 A0A0U1RRM6 35 47 ENAH Protein enabled homolog yes no 2;3;4 0.00011907 73.435 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 8 3 3 1 1.2412 1.0972 24.369 17 Median 1.3814 1.3648 45.437 2 1 Median 1.2867 1.1105 19.674 8 2 Median 1.3082 1.3456 17.433 3 1 Median 1.0785 0.929 10.468 3 2 Plateau 1.5192 1.6229 NaN 1 1 Median NaN NaN NaN 0 0 Median 39174000 14900000 24274000 3746100 1210000 2536100 18702000 7530400 11171000 12517000 4247100 8269400 2875000 1442500 1432500 1334900 469770 865100 0 0 0 35947 313 37768 189640;189641;189642;189643;189644;189645;189646;189647;189648;189649;189650;189651;189652;189653;189654;189655;189656 192648;192649;192650;192651;192652;192653;192654;192655;192656;192657;192658;192659;192660;192661;192662;192663;192664 192655 17 VHLDIQVGEHANNYPEIAAK SNSTRMALFAGGKLRVHLDIQVGEHANNYP QVGEHANNYPEIAAKDKLTELQLRARQLLD R V H A K D 3 0 2 1 0 1 2 1 2 2 1 1 0 0 1 0 0 0 1 2 0 0 20 0 2217.1178 Q7Z7H5 Q7Z7H5 131 150 TMED4 Transmembrane emp24 domain-containing protein 4 yes yes 3 2.4382E-07 52.784 By MS/MS By matching 1 1 1.1304 1.0059 30.541 2 Median 0.86829 0.8105 NaN 1 0 Median 1.4716 1.2483 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14034000 7499500 6534900 12041000 6835300 5205300 1993800 664210 1329600 0 0 0 0 0 0 0 0 0 0 0 0 35948 3258 37769 189657;189658 192665;192666 192665 2 VHLDKAQQNNVEHKVETFSGVYK GKRIRVKLDGSRLIKVHLDKAQQNNVEHKV NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K V H Y K K 1 0 2 1 0 2 2 1 2 0 1 3 0 1 0 1 1 0 1 4 0 0 23 2 2669.3562 P62081;A0A2R8Y623 P62081 156 178 RPS7 40S ribosomal protein S7 yes no 3 7.0536E-05 33.676 By MS/MS By matching 1 1 1.4699 1.4484 14.329 2 Median 1.2394 1.3089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7432 1.6029 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19015000 8703400 10312000 18326000 8473100 9852500 0 0 0 0 0 0 689590 230300 459290 0 0 0 0 0 0 35949 2568 37770 189659;189660 192667 192667 1 VHLENMGSHDIVDGNHR LENVDKALQFLKEQRVHLENMGSHDIVDGN LENMGSHDIVDGNHRLTLGLIWTIILRFQI R V H H R L 0 1 2 2 0 0 1 2 3 1 1 0 1 0 0 1 0 0 0 2 0 0 17 0 1928.8911 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4;P11277 Q01082 128 144 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 3;4 1.619E-12 129.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 6 3 5 1 1.188 0.98152 24.37 17 Median 1.2597 1.1873 0.27732 2 0 Median 1.3533 1.1085 29.731 6 1 Median 0.89966 0.98152 16.322 3 0 Median 0.98963 0.86936 13.851 5 0 Median NaN NaN NaN 0 0 Median 0.78466 0.63641 NaN 1 0 Median 244250000 111190000 133060000 19098000 8285000 10813000 120610000 50747000 69858000 75606000 37690000 37916000 28391000 14147000 14244000 0 0 0 547160 321220 225940 35950 2681;1512;1960 37771;37772 189661;189662;189663;189664;189665;189666;189667;189668;189669;189670;189671;189672;189673;189674;189675;189676;189677 192668;192669;192670;192671;192672;192673;192674;192675;192676;192677;192678;192679;192680;192681;192682;192683;192684;192685;192686;192687;192688;192689;192690;192691;192692;192693;192694 192680 487 27 VHLMNPMVPGLTGSK TFAEKYLPALGYSKRVHLMNPMVPGLTGSK VHLMNPMVPGLTGSKMSSSEEESKIDLLDR R V H S K M 0 0 1 0 0 0 0 2 1 0 2 1 2 0 2 1 1 0 0 2 0 0 15 0 1579.8215 P54577;A0A0C4DGZ5 P54577 208 222 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 3 0.029357 26.781 By MS/MS 1 0.79484 0.75634 NaN 1 Median 0.79484 0.75634 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6911800 3885000 3026800 6911800 3885000 3026800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35951 2482 37773 189678 192695 192695 1 VHLPTQPAADTYSEFHK DTALLLPPSPRPSPRVHLPTQPAADTYSEF LPTQPAADTYSEFHKHYARISTSPSVALSK R V H H K H 2 0 0 1 0 1 1 0 2 0 1 1 0 1 2 1 2 0 1 1 0 0 17 0 1939.9428 Q6W2J9;H7BYY2 Q6W2J9 343 359 BCOR BCL-6 corepressor yes no 3;4 5.3996E-08 94.544 By MS/MS By matching 2 1 0.62398 0.68836 23.132 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69765 0.77315 16.429 2 0 Median 0.60252 0.54676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19661000 12270000 7391200 0 0 0 0 0 0 19009000 11911000 7098100 652600 359440 293170 0 0 0 0 0 0 35952 3191 37774 189679;189680;189681 192696;192697 192696 2 VHLSTGELGIIDSAFGQSGK LFKKETNIQLFVGLKVHLSTGELGIIDSAF GELGIIDSAFGQSGKFKIHIPGGLSPESKK K V H G K F 1 0 0 1 0 1 1 4 1 2 2 1 0 1 0 3 1 0 0 1 0 0 20 0 2015.0324 P57772 P57772 508 527 EEFSEC Selenocysteine-specific elongation factor yes yes 3 0.00031521 32.55 By MS/MS By matching By matching 1 1 1 1.0319 0.91125 0.79858 3 Median NaN NaN NaN 0 0 Median 1.0544 0.91125 NaN 1 0 Median 0.86118 0.91939 NaN 1 0 Median 1.0319 0.90486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3245400 1725100 1520300 0 0 0 1807900 905800 902120 1327400 772090 555270 110130 47248 62883 0 0 0 0 0 0 35953 2519 37775 189682;189683;189684 192698 192698 1 VHLVGIDIFTGK VEMSTSKTGKHGHAKVHLVGIDIFTGKKYE HAKVHLVGIDIFTGKKYEDICPSTHNMDVP K V H G K K 0 0 0 1 0 0 0 2 1 2 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1297.7394 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 56 67 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 2;3 5.2805E-06 112.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 7 5 4 2 1 2 1.2511 1.1635 21.41 21 Median 1.3963 1.2837 12.855 7 0 Median 1.104 0.94189 11.212 5 1 Median 1.1672 1.0507 3.7249 4 0 Linear 1.4033 1.1572 37.206 2 1 Median 1.3143 1.4971 NaN 1 0 Median 1.8013 1.5168 30.724 2 0 Median 405540000 184410000 221130000 181410000 78957000 102450000 94624000 42594000 52031000 124300000 60772000 63526000 1755700 866690 889000 2518900 1041400 1477500 934210 178900 755300 35954 1287 37776 189685;189686;189687;189688;189689;189690;189691;189692;189693;189694;189695;189696;189697;189698;189699;189700;189701;189702;189703;189704;189705 192699;192700;192701;192702;192703;192704;192705;192706;192707;192708;192709;192710;192711;192712;192713;192714;192715;192716;192717;192718;192719;192720;192721;192722;192723;192724 192722 26 VHLVGIDIFTGKK VEMSTSKTGKHGHAKVHLVGIDIFTGKKYE AKVHLVGIDIFTGKKYEDICPSTHNMDVPN K V H K K Y 0 0 0 1 0 0 0 2 1 2 1 2 0 1 0 0 1 0 0 2 0 0 13 1 1425.8344 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 56 68 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 2 0.0005411 74.944 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0921 1.0426 20.212 5 Median 1.0921 1.0859 NaN 1 0 Median 1.1717 1.0361 NaN 1 0 Median 0.91493 0.91608 18.299 2 0 Median 1.5791 1.4218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 80115000 36603000 43511000 32837000 14407000 18430000 3865400 1765900 2099500 40282000 19294000 20988000 3130400 1136700 1993700 0 0 0 0 0 0 35955 1287 37777 189706;189707;189708;189709;189710 192725;192726;192727;192728;192729;192730;192731 192725 7 VHMFEAHSDYIR DDMQIRVFNYNTLERVHMFEAHSDYIRCIA LERVHMFEAHSDYIRCIAVHPTQPFILTSS R V H I R C 1 1 0 1 0 0 1 0 2 1 0 0 1 1 0 1 0 0 1 1 0 0 12 0 1503.6929 P35606;D6R997;D6RBZ7;D6RCL6;D6RBG7;D6RBT6 P35606 92 103 COPB2 Coatomer subunit beta yes no 3 0.00015329 75.045 By MS/MS By MS/MS By matching By MS/MS 3 4 1 2 1.0752 0.92898 33.457 10 Median 1.2614 1.2401 19.669 3 0 Plateau 1.011 0.83391 24.213 4 0 Median 1.8346 1.9625 NaN 1 0 Median 1.1515 0.98553 10.345 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61210000 29050000 32161000 24597000 11518000 13079000 27435000 13910000 13525000 4295700 1548900 2746800 4882700 2072900 2809800 0 0 0 0 0 0 35956 2246 37778 189711;189712;189713;189714;189715;189716;189717;189718;189719;189720 192732;192733;192734;192735;192736;192737;192738;192739;192740;192741;192742;192743 192741 11 VHMTWVQPR SVGLVKGSIDEVDKRVHMTWVQPRVLDLQQ DEVDKRVHMTWVQPRVLDLQQIKGMKDRLE R V H P R V 0 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 2 0 0 9 0 1152.5862 Q9UNM6;A0A087WUL9;J3KNQ3 Q9UNM6 331 339 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.00098836 86.794 By MS/MS By MS/MS By matching 1 1 1 0.9647 0.89732 4.353 3 Median 0.89963 0.89732 NaN 1 0 Median 0.9767 0.85133 NaN 1 0 Median 0.9647 0.92814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41277000 21764000 19513000 13359000 6944100 6415000 17989000 9214100 8774800 9928700 5605300 4323400 0 0 0 0 0 0 0 0 0 35957 4345 37779 189721;189722;189723 192744;192745;192746;192747 192747 4 VHNNIVYNEYISHR NDFLELLRRRFGTKRVHNNIVYNEYISHRE RVHNNIVYNEYISHREHIHMNATQWETLTD R V H H R E 0 1 3 0 0 0 1 0 2 2 0 0 0 0 0 1 0 0 2 2 0 0 14 0 1756.8645 O60870 O60870 89 102 KIN DNA/RNA-binding protein KIN17 yes yes 4 2.7706E-07 97.551 By MS/MS By MS/MS 1 1 1.1321 1.0509 8.7769 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1171 1.1182 NaN 1 0 Median 1.1473 0.98764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21784000 10416000 11368000 0 0 0 0 0 0 5862100 3076400 2785700 15922000 7339300 8582200 0 0 0 0 0 0 35958 1636 37780 189724;189725 192748;192749;192750;192751 192750 4 VHPAVVIR VMATVKKGKPELRKKVHPAVVIRQRKSYRR KPELRKKVHPAVVIRQRKSYRRKDGVFLYF K V H I R Q 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 3 0 0 8 0 889.54977 P62829;C9JD32;J3KT29;J3KTJ3;J3QQT9 P62829 76 83 RPL23 60S ribosomal protein L23 yes no 2 0.0062714 71.949 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 3 2 1.0096 0.92685 17.054 11 Median 1.0381 1.0079 11.858 2 0 Median 0.97589 0.82033 1.252 2 0 Median 1.0093 1.0206 NaN 1 0 Median 1.0844 0.85202 NaN 1 0 Median 1.0096 1.0687 19.917 3 0 Median 1.1144 0.85428 3.9 2 0 Median 123830000 62308000 61523000 19154000 9727000 9426600 67506000 34301000 33205000 23065000 11517000 11548000 5312700 2563400 2749300 5421100 2701600 2719600 3373000 1498300 1874700 35959 2598 37781 189726;189727;189728;189729;189730;189731;189732;189733;189734;189735;189736 192752;192753;192754;192755;192756;192757;192758;192759 192755 8 VHPEIINENGNPSYK GGYIPRILFLDPSGKVHPEIINENGNPSYK VHPEIINENGNPSYKYFYVSAEQVVQGMKE K V H Y K Y 0 0 3 0 0 0 2 1 1 2 0 1 0 0 2 1 0 0 1 1 0 0 15 0 1709.8373 O95881 O95881 124 138 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 2;3 7.5454E-10 100.45 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.85177 0.77946 11.678 6 Median 0.82676 0.77946 3.6348 2 0 Median 1.0283 0.88884 11.232 2 0 Median 0.72274 0.70402 NaN 1 0 Median 0.85375 0.70521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55340000 29065000 26275000 37795000 20318000 17477000 12598000 6063200 6534500 3851600 2208100 1643400 1095700 476230 619470 0 0 0 0 0 0 35960 1802 37782 189737;189738;189739;189740;189741;189742 192760;192761;192762;192763;192764;192765;192766;192767;192768 192765 9 VHPEPGTWDSFLEK KDVAVSYYHFYHMAKVHPEPGTWDSFLEKF KVHPEPGTWDSFLEKFMVGEVSYGSWYQHV K V H E K F 0 0 0 1 0 0 2 1 1 0 1 1 0 1 2 1 1 1 0 1 0 0 14 0 1640.7835 P50225;H3BRY5;H3BQX5 P50225 148 161 SULT1A1 Sulfotransferase 1A1;Sulfotransferase yes no 3 0.015897 23.481 By matching By matching By MS/MS 1 1 1 1.0128 0.96922 37.834 3 Median 0.65638 0.62516 NaN 1 0 Median 1.5789 1.3279 NaN 1 0 Median 1.0128 0.96922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12417000 6287800 6128800 5293500 3216700 2076800 3124900 1102000 2022800 3998100 1969000 2029100 0 0 0 0 0 0 0 0 0 35961 2410 37783 189743;189744;189745 192769;192770 192770 2 VHPETYEWAR GDSTDSYIEVLDGSRVHPETYEWARKMAVD LDGSRVHPETYEWARKMAVDALEYDESAED R V H A R K 1 1 0 0 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 10 0 1286.6044 Q7KZ85 Q7KZ85 1058 1067 SUPT6H Transcription elongation factor SPT6 yes yes 2;3 0.0070645 52.482 By MS/MS By MS/MS By MS/MS 2 3 2 0.99654 0.9118 13.868 7 Median NaN NaN NaN 0 0 Median 1.1406 0.96494 8.0113 2 0 Median 0.77172 0.84748 15.009 3 2 Median 1.1005 0.96588 14.02 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25967000 13829000 12138000 0 0 0 5352400 2733200 2619200 16800000 9485500 7314500 3814400 1610200 2204100 0 0 0 0 0 0 35962 3213 37784 189746;189747;189748;189749;189750;189751;189752 192771;192772;192773;192774;192775;192776;192777;192778 192774 7 VHPVSTMIK SVADLAESIMKNLRRVHPVSTMIKGLYGIK MKNLRRVHPVSTMIKGLYGIKDDVFLSVPC R V H I K G 0 0 0 0 0 0 0 0 1 1 0 1 1 0 1 1 1 0 0 2 0 0 9 0 1010.5583 P00338 P00338 270 278 LDHA L-lactate dehydrogenase A chain yes yes 2 0.0020081 75.213 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 8 7 2 2 1 1 1.0081 0.91617 13.972 21 Median 1.0861 1.0201 9.0527 8 0 Median 0.97759 0.83585 5.5632 7 0 Median 1.092 1.0574 5.0988 2 0 Median 1.0349 0.87066 7.1011 2 0 Median 1.0824 1.0714 NaN 1 0 Median 0.92265 0.75665 NaN 1 0 Median 417790000 203690000 214100000 287780000 138170000 149610000 107630000 54734000 52894000 8478100 3915800 4562200 11445000 5576900 5868200 2315300 1216500 1098800 145950 82745 63204 35963 1813 37785;37786 189753;189754;189755;189756;189757;189758;189759;189760;189761;189762;189763;189764;189765;189766;189767;189768;189769;189770;189771;189772;189773 192779;192780;192781;192782;192783;192784;192785;192786;192787;192788;192789;192790 192786 583 12 VHQILNMR MAEICNANVPQIRQRVHQILNMRGSSIKIV VPQIRQRVHQILNMRGSSIKIVRHIIKEYA R V H M R G 0 1 1 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 8 0 1009.5491 Q8WYA6;A0A087WUB9 Q8WYA6 515 522 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.0037831 85.359 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.9124 1.9428 38.69 4 Median 1.6485 1.6265 NaN 1 1 Median 1.2736 1.1022 NaN 1 0 Median 2.2186 2.3205 NaN 1 1 Median 3.1043 2.5954 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12392000 4566300 7826000 3528000 1241200 2286800 5293400 2425100 2868300 804210 245930 558280 2766700 654110 2112600 0 0 0 0 0 0 35964 28 37787 189774;189775;189776;189777 192791;192792;192793;192794 192793 4 VHQLYETIQR AKHKASVEDADTQSKVHQLYETIQRWSPIA DTQSKVHQLYETIQRWSPIASTLPELVQRL K V H Q R W 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1285.6779 Q13561;H0YI98 Q13561 309 318 DCTN2 Dynactin subunit 2 yes no 2;3 9.7906E-05 119.68 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 2 2 1 1.1688 1.0583 15.731 13 Median 1.1176 1.0668 3.7346 2 0 Median 1.1743 1.0032 10.229 4 0 Median 1.0381 1.0291 7.4427 2 0 Median 1.2836 1.1047 6.0569 2 0 Median 1.0586 1.0472 34.18 2 0 Median 1.9332 1.5004 NaN 1 0 Median 100850000 46870000 53981000 25002000 11047000 13955000 15868000 7427400 8441100 18404000 9602400 8801800 37844000 16847000 20997000 3630800 1909000 1721800 102480 38021 64462 35965 2824 37788 189778;189779;189780;189781;189782;189783;189784;189785;189786;189787;189788;189789;189790 192795;192796;192797;192798;192799;192800;192801;192802;192803;192804;192805;192806;192807;192808 192800 14 VHQVLYR ______________________________ ______________________________ M V H Y R A 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 7 0 913.51339 Q16762;B1AH48 Q16762 2 8 TST Thiosulfate sulfurtransferase yes no 2 0.048488 40.921 By MS/MS By matching By matching 1 1 1 0.69547 0.67116 29.309 3 Median 0.69547 0.67116 NaN 1 0 Median 1.187 1.0159 NaN 1 0 Median 0.58593 0.57668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1633600 860380 773250 894440 548490 345950 614390 237540 376850 124800 74347 50452 0 0 0 0 0 0 0 0 0 35966 2996 37789 189791;189792;189793 192809 192809 1 VHQVTPQTHFIS TICNYEASANPADHRVHQVTPQTHFIS___ DHRVHQVTPQTHFIS_______________ R V H I S - 0 0 0 0 0 2 0 0 2 1 0 0 0 1 1 1 2 0 0 2 0 0 12 0 1392.715 Q9GZP4;X6R8S9 Q9GZP4 200 211 PITHD1 PITH domain-containing protein 1 yes no 2;3 0.0014049 82.287 By MS/MS By MS/MS By MS/MS 2 2 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39842000 0 0 27789000 0 0 10881000 0 0 0 0 0 1171900 0 0 0 0 0 0 0 0 35967 3910 37790 189794;189795;189796;189797;189798 192810;192811;192812;192813;192814 192813 5 VHSDFTAAATR KNLPERLLRERAIFKVHSDFTAAATRGAMA AIFKVHSDFTAAATRGAMAVIDGNVMAINP K V H T R G 3 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1174.5731 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 385 395 CLUH Clustered mitochondria protein homolog yes no 2 0.00047813 106.2 By MS/MS By MS/MS 1 1 1.0266 0.94496 3.4468 2 Median 0.924 0.92221 NaN 1 0 Median 1.1405 0.96828 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4502600 2132100 2370500 672780 266620 406160 3829800 1865500 1964300 0 0 0 0 0 0 0 0 0 0 0 0 35968 1651 37791 189799;189800 192815;192816 192816 2 VHSESDKAITPQAQEELQKQER KEKEDAQEVELQEGKVHSESDKAITPQAQE AITPQAQEELQKQERESAKSELTES_____ K V H E R E 2 1 0 1 0 4 4 0 1 1 1 2 0 0 1 2 1 0 0 1 0 0 22 2 2550.2674 Q02952 Q02952 1751 1772 AKAP12 A-kinase anchor protein 12 yes yes 4;5 0.00025624 27.904 By MS/MS 3 1.0284 1.1192 22.881 3 Median 1.0284 1.1192 22.881 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10981000 5890900 5090400 10981000 5890900 5090400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35969 2705 37792 189801;189802;189803 192817;192818;192819 192819 3 VHSEVASLQEK SSQVCFTQNNYIQVRVHSEVASLQEKQHTT IQVRVHSEVASLQEKQHTTTNVFHFTFMSE R V H E K Q 1 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1225.6303 Q9Y305 Q9Y305 373 383 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 0.00011201 135.55 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 1.23 1.0514 22.911 11 Median 0.93349 0.87992 18.075 3 0 Median 1.3945 1.1827 14.485 4 2 Median 0.8751 0.87183 1.8896 2 0 Median 1.4587 1.3012 38.192 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41359000 18197000 23162000 9054200 4683300 4370900 24808000 9932000 14876000 5615200 2809900 2805300 1881400 771360 1110000 0 0 0 0 0 0 35970 4400 37793 189804;189805;189806;189807;189808;189809;189810;189811;189812;189813;189814 192820;192821;192822;192823;192824;192825;192826;192827;192828;192829;192830;192831;192832;192833 192828 14 VHSEVVQIR VLASKLKESVKEKEKVHSEVVQIRSEVSQV VKEKEKVHSEVVQIRSEVSQVKREKENIQT K V H I R S 0 1 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 0 3 0 0 9 0 1065.5931 Q9P0K7 Q9P0K7 817 825 RAI14 Ankycorbin yes yes 2 0.014552 44.395 By matching By matching By MS/MS By matching 1 1 1 1 0.95021 0.91643 18.897 4 Median NaN NaN NaN 0 0 Median 1.0703 0.91959 NaN 1 0 Median 0.84356 0.91329 NaN 1 0 Median 1.2837 1.0936 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84244 0.69246 NaN 1 0 Median 5351400 2276800 3074700 0 0 0 1824500 724250 1100300 1262700 611140 651540 1601300 680780 920490 0 0 0 662960 260600 402360 35971 4204 37794 189815;189816;189817;189818 192834 192834 1 VHSFPTLK IAKMDSTANEVEAVKVHSFPTLKFFPASAD NEVEAVKVHSFPTLKFFPASADRTVIDYNG K V H L K F 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 8 0 927.5178 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 437 444 P4HB Protein disulfide-isomerase yes no 2 0.00099637 138.83 By MS/MS By MS/MS By MS/MS 3 3 1 1.3572 1.168 14.778 5 Median 1.0688 1.0003 21.922 2 1 Median 1.3867 1.1736 2.9311 2 1 Median NaN NaN NaN 0 0 Median 1.4313 1.2303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59033000 25897000 33136000 36613000 16382000 20231000 20460000 8806900 11653000 0 0 0 1959200 707440 1251800 0 0 0 0 0 0 35972 1883 37795 189819;189820;189821;189822;189823;189824;189825 192835;192836;192837;192838;192839;192840;192841;192842;192843;192844 192835 10 VHSIYNR FAYADYEESRMKYEKVHSIYNRLLAIEDID ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ K V H N R L 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 7 0 887.46135 Q12996;E9PLP8 Q12996 359 365 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.029724 50.12 By MS/MS 1 1.0184 1.09 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0184 1.09 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2429300 1114100 1315200 0 0 0 0 0 0 2429300 1114100 1315200 0 0 0 0 0 0 0 0 0 35973 2777 37796 189826 192845 192845 1 VHSPSGALEECYVTEIDQDKYAVR FAVSLNGAKGAIDAKVHSPSGALEECYVTE ECYVTEIDQDKYAVRFIPRENGVYLIDVKF K V H V R F 2 1 0 2 1 1 3 1 1 1 1 1 0 0 1 2 1 0 2 3 0 0 24 1 2765.2967 P21333;Q60FE5;A0A087WWY3 P21333 2368 2391 FLNA Filamin-A no no 3;4 6.8974E-24 102.6 By MS/MS By MS/MS 4 2 0.79943 0.78426 15.412 6 Median 0.76375 0.78078 13.836 4 0 Median 0.9073 0.86202 21.654 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68867000 37801000 31066000 56585000 30840000 25745000 12282000 6961400 5320300 0 0 0 0 0 0 0 0 0 0 0 0 35974 2088;3120 37797 189827;189828;189829;189830;189831;189832 192846;192847;192848;192849 192846 3 VHTVEDYQAIVDAEWNILYDKLEK VELELKAEKDNAEIRVHTVEDYQAIVDAEW IVDAEWNILYDKLEKIHHSGAKVVLSKLPI R V H E K I 2 0 1 3 0 1 3 0 1 2 2 2 0 0 0 0 1 1 2 3 0 0 24 1 2890.4389 Q99832 Q99832 257 280 CCT7 T-complex protein 1 subunit eta yes yes 3;4 0.030548 12.677 By MS/MS 2 1.0623 0.99524 4.4356 2 Median NaN NaN NaN 0 0 Median 1.0623 0.99524 4.4356 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15541000 6875900 8665300 0 0 0 15541000 6875900 8665300 0 0 0 0 0 0 0 0 0 0 0 0 35975 3771 37798 189833;189834 192850;192851 192851 2 VHTVMTLEQQDMVCYTAQTLVR GSVGITDPCESGNFRVHTVMTLEQQDMVCY EQQDMVCYTAQTLVRILSHGGFRKILGQEG R V H V R I 1 1 0 1 1 3 1 0 1 0 2 0 2 0 0 0 4 0 1 4 0 0 22 0 2622.2604 B4DY09;Q12905 B4DY09 260 281 ILF2 Interleukin enhancer-binding factor 2 yes no 3 0.00021558 27.904 By matching By MS/MS 1 1 0.88973 0.92472 12.917 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78653 0.844 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0065 1.0132 NaN 1 0 Median NaN NaN NaN 0 0 Median 3241400 1582500 1658800 0 0 0 0 0 0 1555700 774360 781310 0 0 0 1685700 808180 877540 0 0 0 35976 609 37799 189835;189836 192852 192852 1 VHTVVDRPQQPMTHR PARSSTPLHSPSPIRVHTVVDRPQQPMTHR VHTVVDRPQQPMTHRETAPVSQPENKPESK R V H H R E 0 2 0 1 0 2 0 0 2 0 0 0 1 0 2 0 2 0 0 3 0 0 15 1 1799.9213 O95817 O95817 295 309 BAG3 BAG family molecular chaperone regulator 3 yes yes 3;4 0.059773 11.262 By MS/MS By MS/MS By matching 1 1 1 0.97666 0.93401 14.882 3 Median 0.97666 1.0014 NaN 1 0 Median 0.7608 0.75272 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0024 0.93401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1470000 750070 719950 735100 366560 368540 617690 317410 300280 0 0 0 117230 66102 51127 0 0 0 0 0 0 35977 1796 37800 189837;189838;189839 192853;192854 192853 2 VHVGDEDFVHLR SFKSQVVAGTNYFIKVHVGDEDFVHLRVFQ FIKVHVGDEDFVHLRVFQSLPHENKPLTLS K V H L R V 0 1 0 2 0 0 1 1 2 0 1 0 0 1 0 0 0 0 0 3 0 0 12 0 1421.7052 P04080 P04080 57 68 CSTB Cystatin-B yes yes 2;3 1.2846E-21 160.59 By MS/MS By MS/MS By MS/MS 1 2 3 1.0261 0.95732 6.1861 5 Median 1.0261 0.99801 NaN 1 0 Median 1.1242 0.95732 NaN 1 0 Median 0.94445 0.9555 8.4679 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109790000 54558000 55232000 9027700 4486700 4541000 18350000 8556100 9794200 82411000 41515000 40896000 0 0 0 0 0 0 0 0 0 35978 1843 37801 189840;189841;189842;189843;189844;189845 192855;192856;192857;192858;192859;192860;192861;192862 192860 8 VHVIFNYK NIMFGPDICGPGTKKVHVIFNYKGKNVLIN CGPGTKKVHVIFNYKGKNVLINKDIRCKDD K V H Y K G 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 2 0 0 8 0 1018.56 P27797;K7EJB9 P27797 144 151 CALR Calreticulin yes no 2 1.5375E-05 158.53 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 1 2 1 1.2361 1.1312 9.0578 13 Median 1.2006 1.1312 13.633 5 1 Median 1.2887 1.1067 4.861 4 0 Median 1.0324 1.0621 NaN 1 0 Median 1.3269 1.1389 2.7425 2 2 Median 1.1756 1.207 NaN 1 0 Median NaN NaN NaN 0 0 Median 186490000 82758000 103730000 118580000 53265000 65319000 58863000 25348000 33515000 2707100 1306300 1400800 5455500 2414500 3041000 882630 424360 458270 0 0 0 35979 2157 37802 189846;189847;189848;189849;189850;189851;189852;189853;189854;189855;189856;189857;189858 192863;192864;192865;192866;192867;192868;192869;192870;192871;192872;192873 192869 11 VHVLWWNESADSR KLVGVFHTEYGALNRVHVLWWNESADSRAA NRVHVLWWNESADSRAAGRHKSHEDPRVVA R V H S R A 1 1 1 1 0 0 1 0 1 0 1 0 0 0 0 2 0 2 0 2 0 0 13 0 1597.7637 Q9UFN0;Q9BS92 Q9UFN0 194 206 NIPSNAP3A;NIPSNAP3B Protein NipSnap homolog 3A;Protein NipSnap homolog 3B yes no 2;3 0.0001346 79.741 By MS/MS By MS/MS By matching 2 1 1 1.0811 1.018 17.135 4 Median 0.9899 0.9398 1.8511 2 1 Median 1.593 1.3494 NaN 1 0 Median 1.1651 1.0883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36636000 18004000 18632000 32842000 16543000 16298000 2929400 1052900 1876500 864570 407830 456740 0 0 0 0 0 0 0 0 0 35980 4259 37803 189859;189860;189861;189862 192874;192875;192876;192877 192875 4 VHVQFFDDSPTR PFDGTFIREKGKSVRVHVQFFDDSPTRGWV SVRVHVQFFDDSPTRGWVSKRLLKPYTGSK R V H T R G 0 1 0 2 0 1 0 0 1 0 0 0 0 2 1 1 1 0 0 2 0 0 12 0 1446.6892 P52701;A0A494C0M1;A0A087WWJ1;C9JH55;C9J8Y8;C9J7Y7;F8WAX8 P52701 129 140 MSH6 DNA mismatch repair protein Msh6 yes no 2;3 1.3688E-06 157.96 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 4 1 2 1.0492 0.91933 12.312 12 Median 0.85367 0.80107 0.46705 2 0 Median 1.0666 0.91768 NaN 1 0 Median 0.82685 0.9088 8.5704 2 0 Median 1.0953 0.95134 8.9709 4 1 Median 1.1304 1.1815 NaN 1 0 Median 1.1721 1.0111 13.197 2 0 Median 121810000 65149000 56663000 49283000 25902000 23381000 1708500 851260 857210 59776000 33303000 26473000 8016000 3604700 4411300 1292600 658290 634280 1736100 829910 906170 35981 2453 37804 189863;189864;189865;189866;189867;189868;189869;189870;189871;189872;189873;189874 192878;192879;192880;192881;192882;192883;192884;192885;192886 192881 9 VHVQPAVDTSGVK TIKYGGHPVPKFPTRVHVQPAVDTSGVKVS TRVHVQPAVDTSGVKVSGPGVEPHGVLREV R V H V K V 1 0 0 1 0 1 0 1 1 0 0 1 0 0 1 1 1 0 0 4 0 0 13 0 1335.7147 Q14315 Q14315 1242 1254 FLNC Filamin-C yes yes 2;3 4.8234E-07 129.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 4 1 2 1.0667 1.0229 20.603 15 Median 1.2707 1.2339 6.0599 4 1 Median 0.98821 0.8756 11.977 4 1 Median NaN NaN NaN 0 0 Median 1.0065 0.96507 11.878 4 0 Median 1.501 1.5882 NaN 1 0 Median 0.98244 0.84188 3.8727 2 0 Median 78923000 38403000 40521000 14383000 5867400 8515800 53253000 27350000 25903000 0 0 0 4826300 2260300 2566000 2228700 657800 1570900 4231800 2267100 1964700 35982 2871 37805 189875;189876;189877;189878;189879;189880;189881;189882;189883;189884;189885;189886;189887;189888;189889 192887;192888;192889;192890;192891;192892;192893;192894;192895;192896;192897;192898;192899;192900;192901;192902;192903;192904;192905;192906;192907;192908;192909;192910 192910 24 VHVSYLDGK LATNIPKGCAETAVRVHVSYLDGKGNLAPQ AETAVRVHVSYLDGKGNLAPQGSVPSAVSS R V H G K G 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 2 0 0 9 0 1016.5291 Q9Y6J9;E9PP94 Q9Y6J9 129 137 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes no 2 0.022052 61.999 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35983 4494 37806 189890 192911 192911 1 VHVTVDLK GKNENEVGRCKETGKVHVTVDLKYYRPTEV RCKETGKVHVTVDLKYYRPTEVDFLQGDCT K V H L K Y 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 3 0 0 8 0 909.52837 O60547 O60547 315 322 GMDS GDP-mannose 4,6 dehydratase yes yes 2 0.0035542 89.142 By MS/MS By MS/MS 1 1 1.2107 1.0866 1.2857 2 Median 1.1524 1.0768 NaN 1 0 Median 1.272 1.0966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9406600 3976000 5430600 6604500 2768100 3836400 2802100 1207900 1594200 0 0 0 0 0 0 0 0 0 0 0 0 35984 1620 37807 189891;189892 192912;192913;192914;192915 192914 4 VHVVALATEQER PFSDECIPWEVWTVKVHVVALATEQERQIC TVKVHVVALATEQERQICR___________ K V H E R Q 2 1 0 0 0 1 2 0 1 0 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1350.7256 F8VVA0;F8VQD9;Q9BSB4 F8VVA0 126 137 ATG101 Autophagy-related protein 101 yes no 2;3 0.00051621 76.465 By MS/MS 2 1.2817 1.2083 9.0097 2 Median 1.2817 1.2083 9.0097 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5374500 2284000 3090400 5374500 2284000 3090400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35985 1059 37808 189893;189894 192916;192917;192918 192916 3 VHVVDLK DQVFQSYKPGEVMVKVHVVDLKAESVAAPI KPGEVMVKVHVVDLKAESVAAPITVRAYLN K V H L K A 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 3 0 0 7 0 808.48069 Q96K76 Q96K76 718 724 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 0.026814 52.636 By MS/MS 1 0.57732 0.5015 NaN 1 Median NaN NaN NaN 0 0 Median 0.57732 0.5015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3104900 1776000 1328900 0 0 0 3104900 1776000 1328900 0 0 0 0 0 0 0 0 0 0 0 0 35986 3690 37809 189895 192919 192919 1 VHYENNSPFLTITSMTR GPFRDVPAYSQDTFKVHYENNSPFLTITSM YENNSPFLTITSMTRVIEVSHWGNIAVEEN K V H T R V 0 1 2 0 0 0 1 0 1 1 1 0 1 1 1 2 3 0 1 1 0 0 17 0 2008.9677 P04843;B7Z4L4 P04843 216 232 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 4.9079E-15 110.56 By MS/MS By MS/MS By MS/MS By matching 4 2 2 1 0.99125 0.86606 60.924 9 Median 0.86327 0.82213 11.42 4 2 Median 1.0683 0.91854 8.32 2 0 Median 1.0398 1.0564 7.5789 2 0 Median 0.16533 0.15266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104920000 53291000 51628000 60906000 31446000 29460000 9147100 4182500 4964600 34188000 17079000 17109000 678070 583890 94182 0 0 0 0 0 0 35987 1853 37810;37811 189896;189897;189898;189899;189900;189901;189902;189903;189904 192920;192921;192922;192923;192924;192925;192926;192927;192928;192929;192930;192931;192932 192920 616 13 VHYETALAESEKK PEEKEKLQKNMKELKVHYETALAESEKKMK LKVHYETALAESEKKMKLTHSLQEELEKFD K V H K K M 2 0 0 0 0 0 3 0 1 0 1 2 0 0 0 1 1 0 1 1 0 0 13 1 1503.7569 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;H0YC82 E9PHM6 1816 1828 DST Dystonin yes no 3 0.049014 13.137 By matching By MS/MS 1 1 1.1251 1.2466 19.764 2 Median 1.0037 1.084 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2613 1.4336 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1957600 624210 1333400 1103400 332610 770750 0 0 0 854200 291600 562600 0 0 0 0 0 0 0 0 0 35988 934 37812 189905;189906 192933 192933 1 VIAAEGEMNASR AMAAEAEASREARAKVIAAEGEMNASRALK RAKVIAAEGEMNASRALKEASMVITESPAA K V I S R A 3 1 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 12 0 1246.5976 P27105 P27105 221 232 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.00018891 132.78 By MS/MS By MS/MS 2 2 0.9982 0.79792 61.278 3 Median 2.0972 2.0945 NaN 1 1 Median 0.89064 0.73228 12.139 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48183000 21520000 26663000 5817500 1539300 4278100 42366000 19981000 22385000 0 0 0 0 0 0 0 0 0 0 0 0 35989 2150 37813 189907;189908;189909;189910 192934;192935;192936;192937;192938;192939 192936 6 VIAALLQTMEDQGNQR ATDFAPGFQKKFHEKVIAALLQTMEDQGNQ IAALLQTMEDQGNQRVQAHAAAALINFTED K V I Q R V 2 1 1 1 0 3 1 1 0 1 2 0 1 0 0 0 1 0 0 1 0 0 16 0 1785.9043 O00410;H0Y8C6 O00410 442 457 IPO5 Importin-5 yes no 2;3 7.9574E-10 103.34 By MS/MS By MS/MS By MS/MS 3 3 2 1.0596 1.0497 24.248 8 Median 1.1346 1.0971 23.665 3 0 Median 1.0641 0.90648 13.534 3 1 Plateau 1.1859 1.2716 17.366 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23524000 11234000 12290000 17228000 8166100 9061600 4878500 2411700 2466800 1417400 655680 761770 0 0 0 0 0 0 0 0 0 35990 1460 37814 189911;189912;189913;189914;189915;189916;189917;189918 192940;192941;192942;192943;192944;192945 192941 6 VIAAMTVGK LNNEKKEKRKEAVKKVIAAMTVGKDVSSLF KEAVKKVIAAMTVGKDVSSLFPDVVNCMQT K V I G K D 2 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 9 0 888.51027 A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6;K7EJX1;K7EN71;K7ERB2;A0A087WXS3;K7EKZ5 A0A087X253 37 45 AP2B1 AP-2 complex subunit beta yes no 2 0.045553 45.335 By MS/MS 1 1.2424 1.0946 NaN 1 Median NaN NaN NaN 0 0 Median 1.2424 1.0946 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2758700 1143500 1615100 0 0 0 2758700 1143500 1615100 0 0 0 0 0 0 0 0 0 0 0 0 35991 128 37815 189919 192946 192946 1 VIAATNRVDILDPALLR LLNQLDGFQPNTQVKVIAATNRVDILDPAL AATNRVDILDPALLRSGRLDRKIEFPMPNE K V I L R S 3 2 1 2 0 0 0 0 0 2 3 0 0 0 1 0 1 0 0 2 0 0 17 1 1849.0785 R4GNH3;P17980;E9PM69;E9PKD5 R4GNH3 312 328 PSMC3 26S protease regulatory subunit 6A yes no 3 0.065882 9.6577 By MS/MS By matching 1 1 1.1368 1.0528 0.85038 2 Median 1.0362 1.0465 NaN 1 0 Median 1.2471 1.0591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11048000 5484900 5563600 10313000 5159700 5153600 735140 325150 409990 0 0 0 0 0 0 0 0 0 0 0 0 35992 2050 37816 189920;189921 192947 192947 1 VIAAVSHELITSTTR LPSITDVTMENNLSRVIAAVSHELITSTTR VIAAVSHELITSTTRALTFGCCEALCLLST R V I T R A 2 1 0 0 0 0 1 0 1 2 1 0 0 0 0 2 3 0 0 2 0 0 15 0 1596.8835 P42858;A0A3B3ISR3 P42858 1005 1019 HTT Huntingtin yes no 2;3 2.3613E-09 101.93 By MS/MS By MS/MS 2 1 0.75901 0.75119 24.943 3 Median 0.72641 0.71378 7.2245 2 0 Median 1.3151 1.0895 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29455000 15052000 14402000 22360000 11735000 10625000 7095300 3317900 3777500 0 0 0 0 0 0 0 0 0 0 0 0 35993 2319 37817 189922;189923;189924 192948;192949;192950 192949 2 VIACDGGGGALGHPK IDLIAEQPVSEVETRVIACDGGGGALGHPK VIACDGGGGALGHPKVYINLDKETKTGTCG R V I P K V 2 0 0 1 1 0 0 5 1 1 1 1 0 0 1 0 0 0 0 1 0 0 15 0 1407.6929 O75380;D6RBT3 O75380 84 98 NDUFS6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial yes no 3 8.8591E-05 52.265 By matching By MS/MS 1 1 0.68724 0.61578 93.661 2 Median 0.32873 0.31754 NaN 1 0 Median 1.4367 1.1941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3490700 1495800 1994900 418660 305370 113300 3072000 1190400 1881600 0 0 0 0 0 0 0 0 0 0 0 0 35994 1666 37818 189925;189926 192951;192952 192952 2 VIADNVKDWSK REAGITEKVVFEQTKVIADNVKDWSKVVLA EQTKVIADNVKDWSKVVLAYEPVWAIGTGK K V I S K V 1 0 1 2 0 0 0 0 0 1 0 2 0 0 0 1 0 1 0 2 0 0 11 1 1273.6667 P60174;U3KPZ0;U3KQF3 P60174 187 197 TPI1 Triosephosphate isomerase yes no 2;3 4.3842E-05 145.28 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 7 5 2 1 2 1 1.1176 1.0959 64.472 18 Median 1.0889 1.0999 17.611 7 0 Median 1.257 1.1299 8.1678 5 1 Median 1.1099 1.1003 2.4866 2 0 Median 0.092448 0.079316 NaN 1 0 Median 1.0381 1.107 46.937 2 0 Median 0.80877 0.68462 NaN 1 0 Median 1655000000 787670000 867300000 1328000000 637290000 690710000 176340000 77989000 98350000 133770000 63038000 70728000 4189600 3941800 247820 12608000 5379800 7227900 66298 33963 32336 35995 2523 37819 189927;189928;189929;189930;189931;189932;189933;189934;189935;189936;189937;189938;189939;189940;189941;189942;189943;189944 192953;192954;192955;192956;192957;192958;192959;192960;192961;192962;192963;192964;192965;192966;192967;192968;192969;192970;192971;192972;192973 192968 21 VIAEGDLGIVEK SAYSIAQKAGMIVRRVIAEGDLGIVEKTCA VRRVIAEGDLGIVEKTCATDLQTKADRLAQ R V I E K T 1 0 0 1 0 0 2 2 0 2 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1241.6867 O95861;A6NF51;F8VZG4;F8W1J0;F8VVW8 O95861 29 40 BPNT1 3(2),5-bisphosphate nucleotidase 1 yes no 2 0.00061626 72.006 By MS/MS By MS/MS 2 1 1.253 1.0525 6.7414 3 Plateau 1.0211 0.94323 3.2803 2 2 Median 1.253 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48305000 22568000 25737000 35400000 17064000 18336000 12905000 5503900 7401000 0 0 0 0 0 0 0 0 0 0 0 0 35996 1799 37820 189945;189946;189947 192974;192975;192976;192977 192977 4 VIAGLYQR RILELSGSSSEDSEKVIAGLYQRAFQHLSE SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE K V I Q R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 918.5287 P78527 P78527 3373 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0012948 146.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 2 2 1.4266 1.2233 15.102 14 Median NaN NaN NaN 0 0 Median 1.5064 1.2487 12.124 3 0 Median 0.85831 0.94908 1.9531 3 1 Plateau 1.4542 1.2737 8.6131 4 0 Median 1.1148 1.1494 15.975 2 0 Median 1.4664 1.1993 5.3398 2 0 Median 259660000 119620000 140040000 0 0 0 95560000 38869000 56691000 98291000 52146000 46144000 25853000 10371000 15482000 24209000 11870000 12339000 15747000 6367900 9379400 35997 2647 37821 189948;189949;189950;189951;189952;189953;189954;189955;189956;189957;189958;189959;189960;189961 192978;192979;192980;192981;192982;192983;192984;192985;192986;192987;192988;192989;192990;192991;192992;192993 192983 16 VIAGQFFGHHHTDSFR GFNEKYLKVVRKHHRVIAGQFFGHHHTDSF IAGQFFGHHHTDSFRMLYDDAGVPISAMFI R V I F R M 1 1 0 1 0 1 0 2 3 1 0 0 0 3 0 1 1 0 0 1 0 0 16 0 1854.8914 F8VWW8;Q92485 F8VWW8 221 236 SMPDL3B Acid sphingomyelinase-like phosphodiesterase 3b yes no 4 0.00042509 53.403 By MS/MS By MS/MS 1 1 0.9552 0.97803 47.553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3057 1.3689 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69876 0.69874 NaN 1 1 Median NaN NaN NaN 0 0 Median 12496000 8093700 4401900 0 0 0 0 0 0 2884000 1514300 1369700 0 0 0 9611600 6579400 3032200 0 0 0 35998 1071 37822 189962;189963 192994;192995 192995 1 VIAHPSFHNINFK EDMKRKQQRTTYIKRVIAHPSFHNINFKQA KRVIAHPSFHNINFKQAEKMMETMDQGDVI R V I F K Q 1 0 2 0 0 0 0 0 2 2 0 1 0 2 1 1 0 0 0 1 0 0 13 0 1522.8045 Q7KZ85 Q7KZ85 1329 1341 SUPT6H Transcription elongation factor SPT6 yes yes 3 9.66E-05 75.819 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.98058 0.91876 10.446 4 Median 1.0136 0.97863 NaN 1 0 Median 1.1747 1.0423 NaN 1 1 Median 0.75353 0.83525 NaN 1 0 Median 0.9486 0.86255 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21466000 10598000 10868000 7758000 3479600 4278400 4212100 1865700 2346400 8146400 4595000 3551300 1349800 657640 692150 0 0 0 0 0 0 35999 3213 37823 189964;189965;189966;189967 192996;192997;192998 192996 3 VIAHTQMR EKDFSSMKKYCQVIRVIAHTQMRLLPLRQK KYCQVIRVIAHTQMRLLPLRQKKAHLMEIQ R V I M R L 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 8 0 954.50692 P39023;G5E9G0;H7C422;B5MCW2;H7C3M2 P39023 162 169 RPL3 60S ribosomal protein L3 yes no 2 0.0042476 82.671 By matching By MS/MS By MS/MS By matching By matching 3 4 2 4 1 1.2331 1.2114 25.065 14 Median 1.1603 1.1315 5.6613 3 0 Median 1.2331 1.0823 6.0404 4 0 Median 1.2922 1.2918 7.15 2 0 Median NaN NaN NaN 0 0 Median 1.2948 1.2759 40.877 4 0 Median 1.684 1.4017 NaN 1 0 Median 6845700 3116800 3729000 358110 161130 196970 4154600 1873400 2281200 751320 345730 405590 0 0 0 1490600 702870 787740 91132 33651 57481 36000 2281 37824 189968;189969;189970;189971;189972;189973;189974;189975;189976;189977;189978;189979;189980;189981 192999;193000;193001;193002 193001 4 VIAINVDDPDAANYNDINDVK LGILAMIDEGETDWKVIAINVDDPDAANYN DDPDAANYNDINDVKRLKPGYLEATVDWFR K V I V K R 3 0 4 5 0 0 0 0 0 3 0 1 0 0 1 0 0 0 1 3 0 0 21 0 2287.0968 Q15181 Q15181 156 176 PPA1 Inorganic pyrophosphatase yes yes 2 3.1163E-25 138.87 By MS/MS By MS/MS 1 1 0.87815 0.82528 17.588 2 Median 0.79053 0.72877 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9755 0.93458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14490000 7287700 7202300 12064000 6082400 5981300 0 0 0 2426300 1205300 1221000 0 0 0 0 0 0 0 0 0 36001 2934 37825 189982;189983 193003;193004;193005 193004 3 VIAINVDDPDAANYNDINDVKR LGILAMIDEGETDWKVIAINVDDPDAANYN DPDAANYNDINDVKRLKPGYLEATVDWFRR K V I K R L 3 1 4 5 0 0 0 0 0 3 0 1 0 0 1 0 0 0 1 3 0 0 22 1 2443.1979 Q15181 Q15181 156 177 PPA1 Inorganic pyrophosphatase yes yes 2;3 3.4091E-26 136.58 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.84312 0.88756 9.1958 6 Median 0.85149 0.87102 8.9501 3 0 Median 0.8006 0.75329 NaN 1 0 Median 0.83483 0.90442 NaN 1 0 Median 0.98511 0.92966 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154920000 75844000 79078000 134310000 64905000 69403000 785050 415890 369160 18586000 9968700 8616900 1245100 555260 689810 0 0 0 0 0 0 36002 2934 37826 189984;189985;189986;189987;189988;189989 193006;193007;193008;193009;193010;193011;193012 193008 7 VIANQQQVLQR IMDNGFGNFVNGIRRVIANQQQVLQRNLEQ GIRRVIANQQQVLQRNLEQEQQQRGMGG__ R V I Q R N 1 1 1 0 0 4 0 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1295.731 M0QYH6;M0QY25;Q86YD1 M0QYH6 88 98 PTOV1 Prostate tumor-overexpressed gene 1 protein yes no 2 0.00017963 93.374 By MS/MS 1 1.0739 0.91347 NaN 1 Median NaN NaN NaN 0 0 Median 1.0739 0.91347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2540200 1219300 1320800 0 0 0 2540200 1219300 1320800 0 0 0 0 0 0 0 0 0 0 0 0 36003 1412 37827 189990 193013 193013 1 VIAPNPAQLQGQR SATNTTLPHMLMSQRVIAPNPAQLQGQRGP QRVIAPNPAQLQGQRGPPKPGLQSSSSVPC R V I Q R G 2 1 1 0 0 3 0 1 0 1 1 0 0 0 2 0 0 0 0 1 0 0 13 0 1390.7681 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 265 277 GATAD2B Transcriptional repressor p66-beta yes no 2 4.4787E-22 194.9 By MS/MS By MS/MS By MS/MS By matching 1 2 3 3 0.68435 0.60299 38.11 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63532 0.63741 NaN 1 0 Median 0.7598 0.64629 17.119 2 0 Median 0.59465 0.60299 22.629 3 0 Median 0.71097 0.58177 61.167 3 0 Median 89519000 55674000 33845000 0 0 0 0 0 0 53219000 32936000 20282000 6144700 3575200 2569600 20413000 12371000 8041600 9742600 6790900 2951800 36004 311 37828 189991;189992;189993;189994;189995;189996;189997;189998;189999 193014;193015;193016;193017;193018;193019;193020;193021;193022 193016 9 VIAPSSSLPTSLTIHHPR MPDLRDGSNVIVTERVIAPSSSLPTSLTIH PSSSLPTSLTIHHPRESSNVVVTERVIQPT R V I P R E 1 1 0 0 0 0 0 0 2 2 2 0 0 0 3 4 2 0 0 1 0 0 18 0 1912.053 Q02413 Q02413 898 915 DSG1 Desmoglein-1 yes yes 3;4 0.00019439 49.559 By MS/MS By MS/MS By MS/MS 1 1 1 0.12891 0.13416 62.618 2 Median 0.20714 0.20888 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.080223 0.086161 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9326700 8515200 811470 3598300 2962400 635910 0 0 0 5240400 5064800 175560 0 0 0 487980 487980 0 0 0 0 36005 2698 37829 190000;190001;190002 193023;193024;193025 193023 3 VIAQLEIR RYQEKGSQLQERWHRVIAQLEIRQSELESI LQERWHRVIAQLEIRQSELESIQEVLGDYR R V I I R Q 1 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 940.57057 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1254 1261 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.2195 1.1245 11.212 7 Median 1.2195 1.1412 10.793 3 0 Median 1.3293 1.0871 15.341 2 0 Median 0.88845 0.95616 NaN 1 0 Median 1.295 1.1245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71946000 33882000 38064000 46207000 21943000 24264000 20347000 9102300 11245000 4942000 2657100 2284900 450660 180270 270390 0 0 0 0 0 0 36006 1220 37830 190003;190004;190005;190006;190007;190008;190009 193026;193027;193028;193029;193030 193028 5 VIAQQVQLQQQQEQVR QVRSLEAHMYPEKLKVIAQQVQLQQQQEQV IAQQVQLQQQQEQVRLLHQEKLEREQQQLR K V I V R L 1 1 0 0 0 8 1 0 0 1 1 0 0 0 0 0 0 0 0 3 0 0 16 0 1922.0334 Q01664 Q01664 190 205 TFAP4 Transcription factor AP-4 yes yes 2;3 8.6283E-87 259.23 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 0.85718 0.87997 20.128 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89515 0.9815 15.467 3 0 Median 1.0823 0.92177 10.238 2 0 Median 0.76104 0.80965 11.611 2 1 Median 0.70134 0.60869 NaN 1 0 Median 92565000 49680000 42885000 0 0 0 0 0 0 73573000 39583000 33990000 11627000 6127400 5499500 6705400 3711300 2994100 659920 258790 401130 36007 2690 37831 190010;190011;190012;190013;190014;190015;190016;190017 193031;193032;193033;193034;193035;193036;193037;193038;193039 193032 9 VIASELGSMPELK RKHFEANNGKLPDNKVIASELGSMPELKKY NKVIASELGSMPELKKYMKKVMPFVAMIKE K V I L K K 1 0 0 0 0 0 2 1 0 1 2 1 1 0 1 2 0 0 0 1 0 0 13 0 1372.7272 Q9P2J5 Q9P2J5 971 983 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00034725 76.143 By MS/MS 1 0.76988 0.74729 NaN 1 Median 0.76988 0.74729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7661700 4234400 3427300 7661700 4234400 3427300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36008 4224 37832 190018 193040;193041 193041 2 VIASELGSMPELKK RKHFEANNGKLPDNKVIASELGSMPELKKY KVIASELGSMPELKKYMKKVMPFVAMIKEN K V I K K Y 1 0 0 0 0 0 2 1 0 1 2 2 1 0 1 2 0 0 0 1 0 0 14 1 1500.8222 Q9P2J5 Q9P2J5 971 984 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2;3 4.9342E-05 91.937 By MS/MS By MS/MS 4 1 0.94434 0.96388 3.7445 5 Median 0.93103 0.97316 4.3107 4 2 Median 1.0355 0.96388 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53965000 28673000 25292000 48841000 26183000 22658000 5124400 2490200 2634200 0 0 0 0 0 0 0 0 0 0 0 0 36009 4224 37833 190019;190020;190021;190022;190023 193042;193043;193044;193045;193046 193044 5 VIASMTVGK LNSDKKEKKKEAVKKVIASMTVGKDVSALF KEAVKKVIASMTVGKDVSALFPDVVNCMQT K V I G K D 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 2 0 0 9 0 904.50519 Q10567;C9J1E7 Q10567 37 45 AP1B1 AP-1 complex subunit beta-1 yes no 2 0.0043669 60.91 By MS/MS By MS/MS 1 2 1.2465 1.0754 8.5389 3 Median 0.96139 0.93369 NaN 1 0 Median 1.2561 1.0821 0.87325 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14399000 6860500 7538200 7307900 3377100 3930800 7090800 3483400 3607400 0 0 0 0 0 0 0 0 0 0 0 0 36010 2752 37834 190024;190025;190026 193047;193048 193047 2 VIATDINESK IGQAAALAFAREGAKVIATDINESKLQELE REGAKVIATDINESKLQELEKYPGIQTRVL K V I S K L 1 0 1 1 0 0 1 0 0 2 0 1 0 0 0 1 1 0 0 1 0 0 10 0 1088.5714 Q9BUT1;D6RFG2;D6R9U8;D6RIR6;D6RBF6 Q9BUT1 33 42 BDH2 3-hydroxybutyrate dehydrogenase type 2 yes no 2 0.0035742 56.258 By MS/MS 1 1.2587 1.1757 NaN 1 Median 1.2587 1.1757 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3989000 1651200 2337800 3989000 1651200 2337800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36011 3843 37835 190027 193049;193050 193050 2 VIDDTNITR AMRQSVENDIHGLRKVIDDTNITRLQLETE IHGLRKVIDDTNITRLQLETEIEALKEELL K V I T R L 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 9 0 1045.5404 P05783;F8VZY9 P05783 188 196 KRT18 Keratin, type I cytoskeletal 18 yes no 2 9.5302E-32 205.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 6 8 1.2729 1.1093 23.006 23 Median 1.2013 1.1068 24.324 3 0 Median 1.4943 1.2755 15.881 2 0 Median 1.2122 1.1606 17.983 3 0 Median 1.1779 1.0083 NaN 1 0 Median 1.4225 1.428 6.2553 6 0 Median 1.203 1.0091 18.78 8 0 Median 1429000000 619480000 809480000 124670000 55533000 69142000 98587000 39731000 58856000 192730000 85039000 107690000 199030000 91471000 107560000 532810000 222020000 310790000 281130000 125680000 155450000 36012 1869 37836 190028;190029;190030;190031;190032;190033;190034;190035;190036;190037;190038;190039;190040;190041;190042;190043;190044;190045;190046;190047;190048;190049;190050 193051;193052;193053;193054;193055;193056;193057;193058;193059;193060;193061;193062;193063;193064;193065;193066;193067;193068;193069;193070;193071;193072;193073;193074;193075;193076;193077;193078;193079;193080;193081;193082;193083 193073 33 VIDFDENTALDDAEEESFRK DTVTWDEYNIQMYDRVIDFDENTALDDAEE ENTALDDAEEESFRKLHLKDKKRFEKANQD R V I R K L 2 1 1 4 0 0 4 0 0 1 1 1 0 2 0 1 1 0 0 1 0 0 20 1 2342.055 Q14257;H0YL43 Q14257 130 149 RCN2 Reticulocalbin-2 yes no 3 0.020313 17.824 By matching By MS/MS By MS/MS 1 1 1 0.88993 0.83231 24.865 3 Median 0.64457 0.65516 NaN 1 0 Median 0.88993 0.83231 NaN 1 1 Median 0.94856 1.0771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6666600 3381100 3285500 982120 550480 431640 1879300 966340 912990 3805100 1864300 1940800 0 0 0 0 0 0 0 0 0 36013 2869 37837 190051;190052;190053 193084;193085 193084 2 VIDPATATSVDLR YSSLLSPMSVNAVMKVIDPATATSVDLRDI MKVIDPATATSVDLRDIKIVKKLGGTIDDC K V I L R D 2 1 0 2 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 2 0 0 13 0 1356.7249 P50991 P50991 194 206 CCT4 T-complex protein 1 subunit delta yes yes 2 8.938E-07 146.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1 2 0.93113 0.79984 43.823 10 Median 0.81199 0.75644 69.853 3 1 Median 0.81989 0.69805 19.569 2 0 Median 0.92968 0.91056 NaN 1 0 Median 0.93259 0.79805 NaN 1 0 Median 1.1996 1.1948 NaN 1 1 Median 1.0239 0.85773 40.46 2 0 Median 391060000 222790000 168280000 216830000 135910000 80915000 51069000 26742000 24327000 83755000 41493000 42263000 12426000 6031900 6394400 16937000 7357000 9580100 10048000 5249400 4798800 36014 2424 37838 190054;190055;190056;190057;190058;190059;190060;190061;190062;190063 193086;193087;193088;193089;193090;193091;193092;193093;193094;193095;193096;193097;193098;193099;193100;193101;193102;193103;193104;193105;193106;193107;193108 193095 23 VIDPVAPR VVNMEWDKIWAFNKKVIDPVAPRYVALLKK IWAFNKKVIDPVAPRYVALLKKEVIPVNVP K V I P R Y 1 1 0 1 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 2 0 0 8 0 865.50215 P07814;V9GYZ6 P07814 499 506 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 8.6234E-05 111.28 By MS/MS By MS/MS 1 1 0.67807 0.60777 25.694 2 Median 0.53798 0.5068 NaN 1 1 Median 0.85464 0.72886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16636000 9321700 7314100 7922300 4856000 3066300 8713500 4465700 4247800 0 0 0 0 0 0 0 0 0 0 0 0 36015 1892 37839 190064;190065 193109;193110;193111 193109 3 VIDQQNGLYR NCMYQACPTQDCNKKVIDQQNGLYRCEKCD DCNKKVIDQQNGLYRCEKCDTEFPNFKYRM K V I Y R C 0 1 1 1 0 2 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1204.62 P27694 P27694 490 499 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 3.6831E-07 162.5 By MS/MS By MS/MS By MS/MS 1 1 1 1.1241 0.97283 21.443 3 Median 0.86911 0.83374 NaN 1 0 Median 1.1241 0.97283 NaN 1 0 Median 1.2317 1.2736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19661000 9902100 9758600 7587700 4746400 2841300 5742700 2299600 3443100 6330300 2856100 3474200 0 0 0 0 0 0 0 0 0 36016 2156 37840 190066;190067;190068 193112;193113;193114;193115;193116 193116 5 VIDRELYQQLQR GLRSLVPAAELLESRVIDRELYQQLQRGER ESRVIDRELYQQLQRGERSVRDVAEVDTVR R V I Q R G 0 2 0 1 0 3 1 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 12 1 1559.842 Q15149;H0YDN1 Q15149 3128 3139 PLEC Plectin yes no 2;3 1.1513E-39 196.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 3 5 1.3003 1.3092 13.356 19 Median 1.2765 1.3673 3.5043 4 0 Median 1.126 1.0553 17.404 2 0 Median 1.0132 1.1135 4.7848 2 1 Median 1.4534 1.3544 18.375 3 0 Median 1.3783 1.4903 1.6144 3 0 Plateau 1.3554 1.1983 7.3234 5 0 Median 324530000 144100000 180430000 157680000 69852000 87829000 55947000 24042000 31905000 66375000 31720000 34655000 2990800 1178700 1812100 35387000 14821000 20567000 6150000 2491900 3658200 36017 2933 37841 190069;190070;190071;190072;190073;190074;190075;190076;190077;190078;190079;190080;190081;190082;190083;190084;190085;190086;190087 193117;193118;193119;193120;193121;193122;193123;193124;193125;193126;193127;193128;193129;193130;193131;193132;193133;193134;193135;193136 193123 19 VIDSSDVVVQVLDAR YKKGQSKRIWGELYKVIDSSDVVVQVLDAR VIDSSDVVVQVLDARDPMGTRSPHIETYLK K V I A R D 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 5 0 0 15 0 1613.8625 Q13823 Q13823 213 227 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 0.0055929 47.288 By MS/MS 1 1.0092 0.87959 NaN 1 Median NaN NaN NaN 0 0 Median 1.0092 0.87959 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1889700 927930 961750 0 0 0 1889700 927930 961750 0 0 0 0 0 0 0 0 0 0 0 0 36018 2839 37842 190088 193137 193137 1 VIDTLHR AYLTIKDRIPQILTKVIDTLHRHKSEFFEK RIPQILTKVIDTLHRHKSEFFEKHGEEGVE K V I H R H 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 7 0 852.48175 Q9H993 Q9H993 32 38 ARMT1 Protein-glutamate O-methyltransferase yes yes 2 0.024489 55.441 By matching By MS/MS By matching 1 1 1 1.8075 1.5718 27.449 3 Plateau 1.6636 1.6206 NaN 1 0 Median 1.8075 1.5718 NaN 1 0 Median 1.0354 0.99285 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1937100 734450 1202600 370590 155590 215000 1436300 514710 921630 130120 64145 65975 0 0 0 0 0 0 0 0 0 36019 3995 37843 190089;190090;190091 193138 193138 1 VIDVGSEWR GDMICPECGLVVGDRVIDVGSEWRTFSNDK LVVGDRVIDVGSEWRTFSNDKATKDPSRVG R V I W R T 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 1 0 2 0 0 9 0 1059.5349 B1APE1;B1APE2;Q00403 B1APE1 44 52 GTF2B Transcription initiation factor IIB yes no 2 0.0022552 73.26 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.1403 1.0242 15.062 5 Median 1.1033 1.0426 NaN 1 0 Median 1.2175 1.0242 NaN 1 0 Median 1.021 1.0048 NaN 1 0 Median 1.1403 0.95103 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6167 1.395 NaN 1 0 Median 14525000 6620700 7904500 5189300 2404800 2784500 2115100 1018100 1097000 2853500 1148700 1704800 3580100 1675700 1904400 0 0 0 787190 373410 413780 36020 578 37844 190092;190093;190094;190095;190096 193139;193140;193141 193139 3 VIDYAVK ______________________________ RVLVAVKRVIDYAVKIRVKPDRTGVVTDGV R V I V K I 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 7 0 806.4538 P38117;M0QY67 P38117 13 19 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.028199 50.966 By MS/MS By MS/MS 1 1 1.3101 1.1704 19.244 2 Median NaN NaN NaN 0 0 Median 1.5874 1.341 NaN 1 0 Median 1.0813 1.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7955600 3286900 4668700 0 0 0 2902800 1141300 1761500 5052800 2145600 2907200 0 0 0 0 0 0 0 0 0 36021 2272 37845 190097;190098 193142;193143 193142 2 VIEASDVVLEVLDAR GKQNSKKLYCQELKKVIEASDVVLEVLDAR VIEASDVVLEVLDARDPLGCRCPQVEEAIV K V I A R D 2 1 0 2 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 4 0 0 15 0 1626.8829 Q9BVP2 Q9BVP2 137 151 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.00027613 65.5 By MS/MS By matching 2 1 0.88725 0.9433 15.595 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88725 0.9202 3.5057 2 1 Median 0.83416 0.7048 NaN 1 0 Median 2722000 1379200 1342700 0 0 0 0 0 0 0 0 0 0 0 0 2654500 1341400 1313100 67478 37883 29595 36022 3858 37846 190099;190100;190101 193144;193145 193144 2 VIEAVSEELSR VFTISKELVPRVLSKVIEAVSEELSRLMQC VLSKVIEAVSEELSRLMQCVSSFSKNGALQ K V I S R L 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1230.6456 Q96KP1 Q96KP1 828 838 EXOC2 Exocyst complex component 2 yes yes 2 1.257E-05 102.06 By MS/MS By MS/MS 1 1 0.71707 0.76031 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71707 0.76031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15105000 10848000 4256700 0 0 0 0 0 0 15105000 10848000 4256700 0 0 0 0 0 0 0 0 0 36023 3695 37847 190102;190103 193146;193147 193147 2 VIECDVVKDYAFVHMEK CTSQELRSLFERRGRVIECDVVKDYAFVHM ECDVVKDYAFVHMEKEADAKAAIAQLNGKE R V I E K E 1 0 0 2 1 0 2 0 1 1 0 2 1 1 0 0 0 0 1 4 0 0 17 1 2080.9962 Q96PK6 Q96PK6 105 121 RBM14 RNA-binding protein 14 yes yes 4 0.030664 14.695 By MS/MS 1 1.0757 1.2043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0757 1.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median 2583600 1285100 1298400 0 0 0 0 0 0 0 0 0 0 0 0 2583600 1285100 1298400 0 0 0 36024 3712 37848 190104 193148 193148 1 VIECSYTSADGQR RRTDGRCLIWGRKPKVIECSYTSADGQRHH PKVIECSYTSADGQRHHSKLLVSGFWGVAR K V I Q R H 1 1 0 1 1 1 1 1 0 1 0 0 0 0 0 2 1 0 1 1 0 0 13 0 1484.6566 Q9UBM7;H0YE57 Q9UBM7 377 389 DHCR7 7-dehydrocholesterol reductase yes no 2 2.0336E-06 159.83 By MS/MS 1 1.1325 0.93144 NaN 1 Median NaN NaN NaN 0 0 Median 1.1325 0.93144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8060200 3799900 4260300 0 0 0 8060200 3799900 4260300 0 0 0 0 0 0 0 0 0 0 0 0 36025 4241 37849 190105 193149;193150 193149 2 VIEDGPEPRPNLR VRGCEIQGMLDDKGRVIEDGPEPRPNLRGE GRVIEDGPEPRPNLRGESRTFRVFLDPNQY R V I L R G 0 2 1 1 0 0 2 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 13 1 1490.7841 O60306 O60306 607 619 AQR Intron-binding protein aquarius yes yes 3 0.00051411 51.013 By matching By MS/MS By matching 1 1 1 0.61928 0.5608 78.887 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21537 0.24541 NaN 1 0 Median 0.61928 0.5608 NaN 1 0 Median 1.1397 1.1881 NaN 1 0 Median NaN NaN NaN 0 0 Median 10664000 5097900 5565800 0 0 0 0 0 0 3141800 2356000 785800 1783200 1121600 661600 5738700 1620300 4118400 0 0 0 36026 1611 37850 190106;190107;190108 193151 193151 1 VIEDIYEKEIVK YWAPHIKKKSPFDIKVIEDIYEKEIVKSRF DIKVIEDIYEKEIVKSRFAIRKIMLLEFSQ K V I V K S 0 0 0 1 0 0 3 0 0 3 0 2 0 0 0 0 0 0 1 2 0 0 12 1 1476.8076 O60306;H0YH15;H0YLN9 O60306 45 56 AQR Intron-binding protein aquarius yes no 2;3 0.0016791 54.608 By MS/MS By matching 2 2 0.77394 0.85213 22.644 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74258 0.85094 2.4053 2 0 Median NaN NaN NaN 0 0 Median 0.99809 1.0566 32.618 2 0 Median NaN NaN NaN 0 0 Median 13622000 7531500 6090800 0 0 0 0 0 0 8567800 4916000 3651800 0 0 0 5054500 2615500 2439000 0 0 0 36027 1611 37851 190109;190110;190111;190112 193152;193153 193152 2 VIEDNEYTAR SESLMCKIADFGLARVIEDNEYTAREGAKF FGLARVIEDNEYTAREGAKFPIKWTAPEAI R V I A R E 1 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 10 0 1208.5673 P07948;H0Y3C5;J3KPD6;P08631 P07948 391 400 LYN;HCK Tyrosine-protein kinase Lyn;Non-specific protein-tyrosine kinase;Tyrosine-protein kinase HCK yes no 2 0.00039083 78.934 By MS/MS By MS/MS By MS/MS 1 1 1 0.69898 0.68841 72.039 3 Median 0.69898 0.68841 NaN 1 0 Median 1.2328 1.074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.26314 0.26242 NaN 1 1 Median NaN NaN NaN 0 0 Median 13796000 10217000 3579800 1049300 647780 401560 1175700 465870 709820 0 0 0 0 0 0 11571000 9102900 2468400 0 0 0 36028 1895 37852 190113;190114;190115 193154;193155;193156 193156 3 VIEDRDSQLR RLKGTSPSSSSRPQRVIEDRDSQLRSQART SRPQRVIEDRDSQLRSQARTLITFAGMIPY R V I L R S 0 2 0 2 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1229.6364 Q8N1F7 Q8N1F7 777 786 NUP93 Nuclear pore complex protein Nup93 yes yes 3 0.0072891 36.334 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2486 1.3516 7.3333 4 Median 1.183 1.213 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1357 1.3123 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3178 1.4318 NaN 1 0 Median 1.5398 1.392 NaN 1 0 Median 3134900 1279400 1855400 592900 261990 330910 0 0 0 1062500 486310 576160 0 0 0 1097500 399030 698460 382010 132120 249890 36029 3356 37853 190116;190117;190118;190119 193157;193158;193159;193160 193157 4 VIEEEWQQVDR DASELSFPFHESILKVIEEEWQQVDRQLPS SILKVIEEEWQQVDRQLPSLACKYPVSSRE K V I D R Q 0 1 0 1 0 2 3 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 11 0 1429.6838 P42166 P42166 501 511 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 3.8984E-13 180.8 By MS/MS By MS/MS By MS/MS By MS/MS 6 6 2 5 1.0652 0.9558 37.519 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97812 0.9718 9.2245 5 1 Median 1.1286 0.9558 11.372 6 3 Median 1.0126 1.0219 1.3418 2 0 Median 1.119 0.92989 68.243 5 0 Median 138680000 67764000 70918000 0 0 0 0 0 0 73313000 36364000 36950000 37052000 16690000 20362000 19020000 9944800 9075400 9296600 4765500 4531100 36030 2306 37854 190120;190121;190122;190123;190124;190125;190126;190127;190128;190129;190130;190131;190132;190133;190134;190135;190136;190137;190138 193161;193162;193163;193164;193165;193166;193167;193168;193169;193170;193171;193172;193173;193174;193175;193176;193177;193178;193179;193180;193181 193177 21 VIEEQLEPAVEK VIEPQYFGLAYLFRKVIEEQLEPAVEKISI FRKVIEEQLEPAVEKISIMAERLANQFAIY K V I E K I 1 0 0 0 0 1 4 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1382.7293 P42704 P42704 1225 1236 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 3.4438E-06 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1926 1.0872 15.091 5 Median 0.92309 0.88305 NaN 1 0 Median 1.1926 1.0046 NaN 1 0 Median 1.0181 1.0872 NaN 1 0 Median 1.3221 1.1459 NaN 1 0 Median 1.2554 1.3249 NaN 1 1 Median NaN NaN NaN 0 0 Median 110480000 54417000 56064000 65053000 34659000 30395000 24107000 10173000 13933000 12759000 6147500 6611600 5899900 2613900 3286000 2661200 823400 1837800 0 0 0 36031 2315 37855 190139;190140;190141;190142;190143 193182;193183;193184;193185;193186;193187;193188 193182 7 VIEETEER AGALGLPDLVAVLTRVIEETEERLSKVSFR LVAVLTRVIEETEERLSKVSFRGLRRQVSA R V I E R L 0 1 0 0 0 0 4 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 8 0 1003.4822 P58107;A0A075B730 P58107 2697 2704 EPPK1 Epiplakin yes no 2 0.00010201 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 1 1 3 4 1.2634 1.1726 14.406 19 Median 1.2065 1.2003 11.916 6 1 Median 1.3148 1.0819 8.6079 4 1 Median 1.5426 1.7218 NaN 1 0 Median 1.3587 1.1794 NaN 1 0 Median 1.3479 1.3578 6.011 3 0 Median 1.2694 1.0793 3.7589 4 0 Median 67343000 29506000 37838000 6291200 2793300 3497900 34970000 15051000 19919000 506970 218680 288290 414130 188670 225460 19921000 8960800 10960000 5240600 2293600 2946900 36032 2520 37856 190144;190145;190146;190147;190148;190149;190150;190151;190152;190153;190154;190155;190156;190157;190158;190159;190160;190161;190162;190163 193189;193190;193191;193192;193193;193194;193195;193196;193197;193198;193199;193200;193201;193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212;193213;193214;193215;193216;193217;193218;193219;193220;193221;193222;193223;193224;193225;193226;193227;193228 193215 40 VIEETEERLSK AGALGLPDLVAVLTRVIEETEERLSKVSFR VLTRVIEETEERLSKVSFRGLRRQVSASEL R V I S K V 0 1 0 0 0 0 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 11 1 1331.6933 P58107;A0A075B730 P58107 2697 2707 EPPK1 Epiplakin yes no 2 0.003448 86.624 By MS/MS By MS/MS 1 1 0.65123 0.70425 9.5026 2 Median 0.63895 0.65848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66374 0.75319 NaN 1 1 Median NaN NaN NaN 0 0 Median 7772200 4034000 3738200 5437300 2929300 2508000 0 0 0 0 0 0 0 0 0 2334900 1104800 1230100 0 0 0 36033 2520 37857 190164;190165 193229;193230 193230 2 VIEGDVVSALNK HYNQLFGDVCFHCNRVIEGDVVSALNKAWC CNRVIEGDVVSALNKAWCVNCFACSTCNTK R V I N K A 1 0 1 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 3 0 0 12 0 1242.682 A0A0M3HER1;A0A0J9YXC7;P48059 A0A0M3HER1 94 105 LIMS1 LIM and senescent cell antigen-like-containing domain protein 1 yes no 2 0.00012009 90.108 By MS/MS By MS/MS By MS/MS 1 1 3 1.1476 1.0254 12.102 5 Median 1.0047 0.91411 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1476 1.1062 NaN 1 0 Median 1.2194 1.0254 13.759 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58950000 23637000 35312000 18660000 9290900 9369100 0 0 0 30845000 10145000 20700000 9444700 4201200 5243600 0 0 0 0 0 0 36034 292 37858 190166;190167;190168;190169;190170 193231;193232;193233;193234;193235 193235 5 VIELFSVCTNEDPK RPPINMEELDESYQKVIELFSVCTNEDPKD KVIELFSVCTNEDPKDRPSAAHIVEALETD K V I P K D 0 0 1 1 1 0 2 0 0 1 1 1 0 1 1 1 1 0 0 2 0 0 14 0 1649.7971 Q96KB5 Q96KB5 293 306 PBK Lymphokine-activated killer T-cell-originated protein kinase yes yes 2 0.031182 26.043 By matching By MS/MS By matching 1 2 1 2.0135 1.9579 30.886 4 Linear 1.8777 1.817 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9573 1.8802 0 2 0 Median 1.1734 1.0031 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18089000 7472200 10617000 3794600 1352800 2441700 0 0 0 13557000 5739800 7816700 737680 379550 358140 0 0 0 0 0 0 36035 3692 37859 190171;190172;190173;190174 193236 193236 1 VIELTGDVTPDMK MDDWKVRIEEKLGKKVIELTGDVTPDMKSI KKVIELTGDVTPDMKSIAKADLIVTTPEKW K V I M K S 0 0 0 2 0 0 1 1 0 1 1 1 1 0 1 0 2 0 0 2 0 0 13 0 1416.717 Q8N3C0 Q8N3C0 1404 1416 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 1.1751E-11 140.3 By MS/MS By MS/MS 1 1 0.95923 1.0003 0.16984 2 Median 0.99682 0.99912 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92306 1.0015 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16241000 7058500 9182700 13037000 5507700 7529000 0 0 0 3204400 1550700 1653700 0 0 0 0 0 0 0 0 0 36036 3366 37860 190175;190176 193237;193238 193237 2 VIEPFSR LAKLYDNLLEQNLIRVIEPFSRVQIEHISS LLEQNLIRVIEPFSRVQIEHISSLIKLSKA R V I S R V 0 1 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 7 0 846.45995 O00231 O00231 338 344 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.010865 81.297 By MS/MS By MS/MS By MS/MS 1 1 1 1.1019 1.0416 43.351 3 Median 1.1019 1.0416 NaN 1 1 Median 1.0302 0.89751 NaN 1 0 Median 2.0189 2.0259 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50849000 26148000 24701000 21554000 11013000 10541000 24383000 13158000 11225000 4912200 1977900 2934200 0 0 0 0 0 0 0 0 0 36037 1448 37861 190177;190178;190179 193239;193240;193241 193241 3 VIEPLKDFHKDEVR HNDTELIRKLREEGKVIEPLKDFHKDEVRI KVIEPLKDFHKDEVRILGRELGLPEELVSR K V I V R I 0 1 0 2 0 0 2 0 1 1 1 2 0 1 1 0 0 0 0 2 0 0 14 2 1723.9257 P49915 P49915 407 420 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3;4 4.399E-05 80.3 By MS/MS By MS/MS By MS/MS By MS/MS 3 3 2 4 0.95497 0.99443 13.433 12 Median 0.95213 1.0487 13.644 3 1 Median 0.95778 0.91111 16.995 3 2 Median 0.85819 0.97871 1.3497 2 0 Median 0.99252 1.0485 4.0846 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120400000 62361000 58041000 27763000 13476000 14287000 26638000 14913000 11725000 55599000 28747000 26852000 10402000 5224400 5177100 0 0 0 0 0 0 36038 2405 37862 190180;190181;190182;190183;190184;190185;190186;190187;190188;190189;190190;190191 193242;193243;193244;193245;193246;193247;193248;193249;193250;193251;193252;193253;193254 193253 13 VIEPQYFGLAYLFR AAIENIENMLTSENKVIEPQYFGLAYLFRK KVIEPQYFGLAYLFRKVIEEQLEPAVEKIS K V I F R K 1 1 0 0 0 1 1 1 0 1 2 0 0 2 1 0 0 0 2 1 0 0 14 0 1714.9083 P42704 P42704 1210 1223 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 0.00030949 73.721 By MS/MS By MS/MS By matching By matching 5 1 1 2 0.99586 0.95817 49.86 9 Median 0.98733 0.95463 18.15 5 2 Median 1.3424 1.132 NaN 1 0 Median 1.2236 1.3142 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73479 0.79323 128.67 2 0 Median NaN NaN NaN 0 0 Median 60044000 29564000 30481000 53396000 26591000 26805000 5355100 2304800 3050400 782750 353770 428980 0 0 0 510410 313830 196580 0 0 0 36039 2315 37863 190192;190193;190194;190195;190196;190197;190198;190199;190200 193255;193256;193257;193258;193259;193260 193260 6 VIEQLGTPSAEFMK CVIFQGTDHIDQWNKVIEQLGTPSAEFMKK KVIEQLGTPSAEFMKKLQPTVRNYVENRPK K V I M K K 1 0 0 0 0 1 2 1 0 1 1 1 1 1 1 1 1 0 0 1 0 0 14 0 1548.7858 P45984 P45984 237 250 MAPK9 Mitogen-activated protein kinase 9 yes yes 2 0.0011401 50.284 By MS/MS 1 0.9818 0.92615 NaN 1 Median 0.9818 0.92615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5227700 2639500 2588200 5227700 2639500 2588200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36040 2333 37864 190201 193261;193262 193261 2 VIEQLLVGLK EDDDEDDDVPEGVERVIEQLLVGLKDKDTV EGVERVIEQLLVGLKDKDTVVRWSAAKGIG R V I L K D 0 0 0 0 0 1 1 1 0 1 3 1 0 0 0 0 0 0 0 2 0 0 10 0 1110.7012 Q9BTW9;J3KR97 Q9BTW9 361 370 TBCD Tubulin-specific chaperone D yes no 2 0.049573 28.174 By MS/MS By matching 2 2 1.2314 1.1443 20.104 4 Median 1.009 1.0082 7.0181 2 0 Median 1.5812 1.3714 14.723 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7226200 3286200 3940000 2493000 1348800 1144200 4733200 1937500 2795700 0 0 0 0 0 0 0 0 0 0 0 0 36041 1324 37865 190202;190203;190204;190205 193263 193263 1 VIEQNGDSFTIHTNSSLR DFATRKIAKLLKPQKVIEQNGDSFTIHTNS QNGDSFTIHTNSSLRNYFVKFKVGEEFDED K V I L R N 0 1 2 1 0 1 1 1 1 2 1 0 0 1 0 3 2 0 0 1 0 0 18 0 2016.9865 Q96R05 Q96R05 42 59 RBP7 Retinoid-binding protein 7 yes yes 3 2.4494E-12 108.77 By matching By MS/MS By matching 2 1 1 1.1291 1.1079 13.614 4 Median 0.98928 0.96651 11.676 2 0 Median 1.3752 1.1694 NaN 1 0 Median 1.1856 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25365000 11286000 14079000 10064000 4558800 5504800 11681000 5066100 6614600 3620700 1661500 1959200 0 0 0 0 0 0 0 0 0 36042 3724 37866 190206;190207;190208;190209 193264;193265 193264 2 VIEQPIR VYTEAIADIKRTVLRVIEQPIRGMGMNSPE DIKRTVLRVIEQPIRGMGMNSPELLLLVEN R V I I R G 0 1 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 7 0 853.50215 Q92797;A0A087WUE9 Q92797 826 832 SYMPK Symplekin yes no 2 0.0027798 106.29 By matching By MS/MS By matching 1 1 1 0.98497 0.84739 20.453 3 Median NaN NaN NaN 0 0 Median 0.98497 0.84739 NaN 1 0 Median 0.75827 0.83396 NaN 1 0 Median 1.4046 1.1977 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6827400 3382900 3444600 0 0 0 1713300 773100 940200 3977500 2158100 1819400 1136700 451690 684980 0 0 0 0 0 0 36043 3558 37867 190210;190211;190212 193266;193267 193266 2 VIESTQDLGNDLAGVMALQR LECNETKSWIREKTKVIESTQDLGNDLAGV QDLGNDLAGVMALQRKLTGMERDLVAIEAK K V I Q R K 2 1 1 2 0 2 1 2 0 1 3 0 1 0 0 1 1 0 0 2 0 0 20 0 2129.0787 Q01082;A0A087WUZ3 Q01082 977 996 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2;3 2.7712E-21 162.97 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 9 8 3 2 1.1398 0.99818 23.34 25 Median 1.154 1.1063 8.7825 3 0 Plateau 1.1946 0.9886 25.798 9 0 Median 0.87292 0.94711 23.908 8 1 Median 1.2434 1.0808 37.307 3 0 Median 1.0755 1.1243 8.1824 2 0 Median NaN NaN NaN 0 0 Median 106480000 50362000 56119000 9909700 4497300 5412400 44219000 19282000 24937000 48467000 24675000 23791000 845720 393890 451830 3040900 1514100 1526800 0 0 0 36044 2681 37868;37869 190213;190214;190215;190216;190217;190218;190219;190220;190221;190222;190223;190224;190225;190226;190227;190228;190229;190230;190231;190232;190233;190234;190235;190236;190237 193268;193269;193270;193271;193272;193273;193274;193275;193276;193277;193278;193279;193280;193281;193282;193283;193284;193285;193286;193287 193275 1382 20 VIESTQGLGNDLAGVLALQR LECTETQAWMREKTKVIESTQGLGNDLAGV QGLGNDLAGVLALQRKLAGTERDLEAIAAR K V I Q R K 2 1 1 1 0 2 1 3 0 1 4 0 0 0 0 1 1 0 0 2 0 0 20 0 2053.1168 O15020 O15020 980 999 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 3.2502E-19 122.42 By matching By MS/MS 1 2 0.90854 1.0085 5.888 3 Median NaN NaN NaN 0 0 Median 1.2868 1.1072 NaN 1 0 Median 0.90317 1.0008 1.0912 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7788600 3582300 4206300 0 0 0 771740 338820 432920 7016800 3243400 3773400 0 0 0 0 0 0 0 0 0 36045 1512 37870 190238;190239;190240 193288;193289;193290 193289 3 VIEVSHWGNIAVEENVDLK YENNSPFLTITSMTRVIEVSHWGNIAVEEN SHWGNIAVEENVDLKHTGAVLKGPFSRYDY R V I L K H 1 0 2 1 0 0 3 1 1 2 1 1 0 0 0 1 0 1 0 4 0 0 19 0 2150.1008 P04843;B7Z4L4 P04843 233 251 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 0.010018 30.956 By MS/MS 1 1.2729 1.2249 NaN 1 Median 1.2729 1.2249 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3022100 1283000 1739000 3022100 1283000 1739000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36046 1853 37871 190241 193291 193291 1 VIFGLFGK KVYFDLRIGDEDVGRVIFGLFGKTVPKTVD GDEDVGRVIFGLFGKTVPKTVDNFVALATG R V I G K T 0 0 0 0 0 0 0 2 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 879.52182 P23284 P23284 60 67 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.0060114 73.039 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 1 2 1 1 1 1.2616 1.1653 10.695 9 Median 1.1486 1.0639 6.6663 3 0 Median 1.4717 1.2636 NaN 1 0 Median 1.1575 1.1226 0.018247 2 0 Median 1.5372 1.278 NaN 1 0 Median 1.2918 1.4425 NaN 1 0 Median 1.5269 1.2603 NaN 1 0 Median 287680000 121880000 165800000 62202000 26905000 35298000 4313200 1667600 2645500 148230000 64706000 83525000 53329000 20463000 32866000 9289900 4091000 5199000 10313000 4043300 6269400 36047 2109 37872 190242;190243;190244;190245;190246;190247;190248;190249;190250 193292;193293;193294;193295;193296;193297;193298;193299;193300;193301 193300 10 VIFLEDDDVAAVVDGR YFASDASAVIEHTNRVIFLEDDDVAAVVDG IFLEDDDVAAVVDGRLSIHRIKRTAGDHPG R V I G R L 2 1 0 4 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 4 0 0 16 0 1731.8679 Q06210 Q06210 291 306 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.00013449 57.492 By MS/MS By MS/MS 1 2 1.1428 0.99025 32.029 3 Median 1.7383 1.694 NaN 1 0 Median 1.1239 0.97346 2.4192 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8779100 3932000 4847100 3056700 1215400 1841300 5722400 2716500 3005900 0 0 0 0 0 0 0 0 0 0 0 0 36048 2723 37873 190251;190252;190253 193302;193303;193304 193302 3 VIFLENYR ADVVNNDPMVGSKLKVIFLENYRVSLAEKV MVGSKLKVIFLENYRVSLAEKVIPATDLSE K V I Y R V 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 P06737;E9PK47;P11216;H0Y4Z6;P11217 P06737 643 650 PYGL;PYGB;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form no no 2 0.0029313 134.66 By MS/MS By MS/MS By MS/MS By matching 3 2 1 1 1.109 1.05 11.839 7 Median 1.2134 1.1672 14.899 3 0 Plateau 1.1194 0.97496 18.376 2 0 Median 0.92047 0.98256 NaN 1 0 Median 1.2303 1.0599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51881000 23775000 28107000 34889000 16002000 18888000 10454000 4603200 5851000 5042900 2492700 2550200 1494500 677020 817500 0 0 0 0 0 0 36049 1874;1956;1957 37874 190254;190255;190256;190257;190258;190259;190260 193305;193306;193307;193308;193309;193310;193311 193305 7 VIFPAAEDKDQDLITIIGK GGGKIRKVRDSTGARVIFPAAEDKDQDLIT AAEDKDQDLITIIGKEDAVREAQKELEALI R V I G K E 2 0 0 3 0 1 1 1 0 4 1 2 0 1 1 0 1 0 0 1 0 0 19 1 2085.1358 Q00341;A0A024R4E5;H0Y394;H7C2D1 Q00341 761 779 HDLBP Vigilin yes no 3 0.00060553 32.181 By MS/MS By MS/MS By matching 1 1 1 1.0309 0.95919 13.745 3 Median 0.93242 0.89974 NaN 1 0 Median 1.0309 0.95919 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2606 1.171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17062000 8143600 8918000 11378000 5501100 5877300 5484500 2570000 2914500 0 0 0 198770 72603 126170 0 0 0 0 0 0 36050 4 37875 190261;190262;190263 193312;193313;193314;193315 193313 4 VIFPAAEDKDQDLITIIGKEDAVR GGGKIRKVRDSTGARVIFPAAEDKDQDLIT DQDLITIIGKEDAVREAQKELEALIQNLDN R V I V R E 3 1 0 4 0 1 2 1 0 4 1 2 0 1 1 0 1 0 0 2 0 0 24 2 2655.4119 Q00341;A0A024R4E5;H0Y394;H7C2D1 Q00341 761 784 HDLBP Vigilin yes no 3;4 1.2094E-12 61.136 By MS/MS By matching 3 1 0.89716 0.97193 14.251 4 Median 0.87795 0.96911 2.6824 3 0 Median 1.2803 1.2684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12025000 6117200 5907700 11445000 5864900 5580100 579910 252270 327630 0 0 0 0 0 0 0 0 0 0 0 0 36051 4 37876 190264;190265;190266;190267 193316;193317;193318 193316 3 VIFPAPTPK MGHVIRGTVVMKDGKVIFPAPTPKNIPQGA VMKDGKVIFPAPTPKNIPQGAPVKQKTVAE K V I P K N 1 0 0 0 0 0 0 0 0 1 0 1 0 1 3 0 1 0 0 1 0 0 9 0 968.5695 Q13423;E9PCX7;A0A590UK15;A0A590UJM2;A0A590UK29;A0A590UJI3 Q13423 434 442 NNT NAD(P) transhydrogenase, mitochondrial yes no 2 0.00050786 119.27 By MS/MS By MS/MS By matching 2 2 1 0.47161 0.51871 28.565 5 Median 0.44262 0.43486 7.4544 2 0 Median 0.84596 0.74496 15.548 2 0 Median 0.47161 0.51871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46820000 28757000 18063000 22636000 15148000 7488600 22721000 12526000 10195000 1462700 1082600 380050 0 0 0 0 0 0 0 0 0 36052 2814 37877 190268;190269;190270;190271;190272 193319;193320;193321;193322;193323;193324 193320 6 VIFPTGDSK EREFERMREDREVLRVIFPTGDSKVVLPCN DREVLRVIFPTGDSKVVLPCNLLRMIWNAQ R V I S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 9 0 962.5073 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 968 976 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.001354 82.452 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 0.76092 0.83542 38.314 7 Median 1.387 1.4685 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74783 0.83363 2.5772 2 1 Median NaN NaN NaN 0 0 Median 0.57552 0.59808 47.264 2 0 Median 0.9006 0.76112 33.2 2 0 Median 30605000 15961000 14645000 2828400 1221100 1607300 0 0 0 6341700 3584700 2757000 0 0 0 17671000 9126800 8544200 3764400 2028000 1736400 36053 486 37878 190273;190274;190275;190276;190277;190278;190279 193325;193326;193327;193328;193329 193327 5 VIFTKPVR VSSFNQDPSSCGEGRVIFTKPVRGVEARHE SSCGEGRVIFTKPVRGVEARHERKRVLGKV R V I V R G 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 2 0 0 8 1 958.59639 C9JJV1;Q9Y5U2 C9JJV1 149 156 TSSC4 Protein TSSC4 yes no 2 0.062318 53.554 By matching By matching By MS/MS 1 1 1 1.076 1.1488 2.8944 3 Median 1.076 1.1488 NaN 1 0 Median 1.174 1.0951 NaN 1 0 Median 1.017 1.1538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3775400 1793500 1981900 522210 223770 298440 747040 353460 393580 2506100 1216200 1289900 0 0 0 0 0 0 0 0 0 36054 704 37879 190280;190281;190282 193330 193330 1 VIFTSPIK CAEYAIALALREKQRVIFTSPIKALSNQKY ALREKQRVIFTSPIKALSNQKYREMYEEFQ R V I I K A 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 1 1 0 0 1 0 0 8 0 903.54295 P42285 P42285 185 192 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.010382 58.981 By matching By MS/MS By MS/MS By matching By matching 1 2 1 1 1 0.91306 0.98815 16.476 6 Median 1.1163 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91101 0.98815 3.3244 2 0 Median 0.87162 0.73978 NaN 1 0 Median 1.0124 1.0425 NaN 1 0 Median 0.90719 0.77385 NaN 1 0 Median 23874000 12017000 11857000 3635000 1805200 1829800 0 0 0 15990000 8043800 7946400 2038500 1104800 933680 1847500 878050 969490 362350 184710 177640 36055 2309 37880 190283;190284;190285;190286;190287;190288 193331;193332;193333;193334;193335 193335 5 VIGELVGHTER VGPGAGESPGTPPFRVIGELVGHTERVSGF PPFRVIGELVGHTERVSGFTFSHHPGQYNL R V I E R V 0 1 0 0 0 0 2 2 1 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1208.6513 Q8TEQ6 Q8TEQ6 56 66 GEMIN5 Gem-associated protein 5 yes yes 2;3 4.7299E-05 96.229 By MS/MS By MS/MS By MS/MS 2 2 2 1.169 1.0065 8.1665 6 Median 1.1208 1.0535 12.287 2 0 Median 1.1358 0.96425 4.9965 2 0 Median NaN NaN NaN 0 0 Median 1.2058 1.062 6.5313 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30796000 13729000 17067000 19066000 8461900 10604000 8288900 3719400 4569400 0 0 0 3441300 1547700 1893600 0 0 0 0 0 0 36056 3478 37881 190289;190290;190291;190292;190293;190294 193336;193337;193338;193339;193340;193341;193342;193343 193340 8 VIGENLVIVK V I V K 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 REV__O75976 yes yes 2 0.0056885 65.246 By MS/MS 1 0.4617 0.4967 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4617 0.4967 NaN 1 1 Median NaN NaN NaN 0 0 Median 3835000 3210600 624450 0 0 0 0 0 0 0 0 0 0 0 0 3835000 3210600 624450 0 0 0 + 36057 4534 37882 190295 193344 193344 1 VIGGDDLSTLTGK RLKSYCNDQSTGDIKVIGGDDLSTLTGKNV IKVIGGDDLSTLTGKNVLIVEDIIDTGKTM K V I G K N 0 0 0 2 0 0 0 3 0 1 2 1 0 0 0 1 2 0 0 1 0 0 13 0 1274.6718 P00492 P00492 116 128 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.00021121 81.017 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.194 1.0672 1.2965 5 Median 1.194 1.0962 NaN 1 0 Median 1.2879 1.0672 NaN 1 0 Median 1.1422 1.0709 NaN 1 0 Median 1.2884 1.0651 NaN 1 0 Median 1.0377 1.0608 NaN 1 0 Median NaN NaN NaN 0 0 Median 366150000 161020000 205130000 286200000 125560000 160640000 53982000 23392000 30591000 22093000 10219000 11874000 1325100 597520 727550 2549500 1251700 1297800 0 0 0 36058 1822 37883 190296;190297;190298;190299;190300 193345;193346;193347;193348;193349 193349 5 VIGHYAGEDATDAFR YNITKWSIQHPGGQRVIGHYAGEDATDAFR VIGHYAGEDATDAFRAFHPDLEFVGKFLKP R V I F R A 3 1 0 2 0 0 1 2 1 1 0 0 0 1 0 0 1 0 1 1 0 0 15 0 1620.7532 O95864 O95864 59 73 FADS2 Fatty acid desaturase 2 yes yes 2;3 8.4929E-10 127.79 By MS/MS By MS/MS By MS/MS 3 2 1 0.7406 0.75515 33.707 6 Median 0.77687 0.75845 10.675 3 0 Plateau 1.594 1.31 11.597 2 0 Median 0.69404 0.75185 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89838000 42757000 47081000 49204000 28116000 21088000 36542000 12079000 24463000 4091900 2561800 1530100 0 0 0 0 0 0 0 0 0 36059 1800 37884 190301;190302;190303;190304;190305;190306 193350;193351;193352;193353;193354;193355;193356;193357 193357 7 VIGIDHIK ILTACFARMVGCTGKVIGIDHIKELVDDSV MVGCTGKVIGIDHIKELVDDSVNNVRKDDP K V I I K E 0 0 0 1 0 0 0 1 1 3 0 1 0 0 0 0 0 0 0 1 0 0 8 0 893.53345 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8;C9J0F2 A0A0A0MRJ6 164 171 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2 0.0055403 75.189 By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 1.1673 1.0425 22.453 8 Median 1.1865 1.1025 10.521 2 0 Median 1.203 1.0117 19.87 3 0 Median 1.1326 1.0619 NaN 1 0 Median 0.88455 0.74265 NaN 1 0 Median 1.4458 1.484 NaN 1 0 Median NaN NaN NaN 0 0 Median 69652000 32158000 37493000 32951000 15369000 17582000 11417000 5215300 6201500 23096000 10655000 12441000 1333100 626760 706320 855470 292630 562840 0 0 0 36060 163 37885 190307;190308;190309;190310;190311;190312;190313;190314 193358;193359;193360;193361;193362 193359 5 VIGLSSDLQQVGGASAR IGVDLIMKTCFSPNRVIGLSSDLQQVGGAS GLSSDLQQVGGASARIQDALSTVLQYAEDV R V I A R I 2 1 0 1 0 2 0 3 0 1 2 0 0 0 0 3 0 0 0 2 0 0 17 0 1656.8795 O00303;H0YDT6 O00303 262 278 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2;3 4.1249E-15 167.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 2 1 2 2 1.215 1.1167 29.716 14 Median 1.1589 1.0677 6.6679 3 1 Median 1.5199 1.2837 35.319 4 0 Median 1.1717 1.1547 0.71591 2 0 Median 1.0389 0.90647 NaN 1 0 Median 2.0197 2.0245 1.4759 2 0 Median 1.173 1.0202 8.7727 2 0 Median 192290000 84500000 107790000 125160000 56339000 68817000 9467400 4167000 5300400 41848000 18746000 23102000 725680 311260 414420 13330000 4134900 9194800 1767200 801100 966130 36061 1457 37886 190315;190316;190317;190318;190319;190320;190321;190322;190323;190324;190325;190326;190327;190328 193363;193364;193365;193366;193367;193368;193369;193370;193371;193372;193373 193366 11 VIGMHYFSPVDK LPISEIAAVSKRPEKVIGMHYFSPVDKMQL PEKVIGMHYFSPVDKMQLLEIITTEKTSKD K V I D K M 0 0 0 1 0 0 0 1 1 1 0 1 1 1 1 1 0 0 1 2 0 0 12 0 1391.6908 H0YFD6;P40939;A0A2R8Y4F5 H0YFD6 494 505 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes no 2;3 0.0003767 96.143 By MS/MS By matching By MS/MS 4 2 3 1.0633 1.0914 29.58 9 Median 1.0705 0.99152 25.543 4 2 Median 1.5359 1.3588 19.672 2 0 Median 0.97142 0.96644 32.274 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100940000 50874000 50069000 42237000 21219000 21018000 5286800 2041200 3245700 53419000 27614000 25805000 0 0 0 0 0 0 0 0 0 36062 1180 37887;37888 190329;190330;190331;190332;190333;190334;190335;190336;190337 193374;193375;193376;193377;193378;193379;193380;193381 193378 397 8 VIGNQSLVNELAFTAR VGLAADVGTLQRLPKVIGNQSLVNELAFTA IGNQSLVNELAFTARKMMADEALGSGLVSR K V I A R K 2 1 2 0 0 1 1 1 0 1 2 0 0 1 0 1 1 0 0 2 0 0 16 0 1730.9315 Q13011 Q13011 215 230 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 2;3 6.1853E-10 117.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 1 1.2293 1.0423 22.476 9 Median 0.98659 0.92103 1.7255 2 0 Median 1.2293 1.0423 3.0905 3 0 Median 0.97237 0.96276 NaN 1 1 Median 1.4978 1.2491 NaN 1 0 Median 1.2576 1.2317 NaN 1 0 Median 2.2424 1.8643 NaN 1 0 Median 95667000 46479000 49187000 72931000 36441000 36490000 12896000 5635600 7260100 5698300 2721900 2976400 2452300 1019200 1433200 1586200 626600 959640 103200 34995 68202 36063 2778 37889 190338;190339;190340;190341;190342;190343;190344;190345;190346 193382;193383;193384;193385;193386;193387;193388;193389;193390;193391;193392;193393;193394 193391 13 VIGPEPTGFLLK TDVNGQTPLMLSAHKVIGPEPTGFLLKFNP AHKVIGPEPTGFLLKFNPSLNVVDKIHQNT K V I L K F 0 0 0 0 0 0 1 2 0 1 2 1 0 1 2 0 1 0 0 1 0 0 12 0 1269.7333 Q8IUH4 Q8IUH4 193 204 ZDHHC13 Palmitoyltransferase ZDHHC13 yes yes 2 0.005853 39.937 By MS/MS By matching By matching 2 1 1 0.8609 0.87532 16.583 4 Median 0.78664 0.76399 16.566 2 0 Median 1.1538 1.0107 NaN 1 0 Median 0.81252 0.89202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16812000 9255600 7555900 13198000 7415000 5782800 1885700 832930 1052700 1728200 1007800 720450 0 0 0 0 0 0 0 0 0 36064 3315 37890 190347;190348;190349;190350 193395 193395 1 VIGQDSSEIHFK EDLGDKKEGEYIKLKVIGQDSSEIHFKVKM KLKVIGQDSSEIHFKVKMTTHLKKLKESYC K V I F K V 0 0 0 1 0 1 1 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 12 0 1358.683 B8ZZN6;P63165;B8ZZJ0;B9A032;G2XKQ0 B8ZZN6 26 37 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 2;3 4.1361E-06 105.2 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 6 6 4 1 1.1385 1.0081 25.745 21 Median 1.1187 1.0596 23.109 4 0 Median 1.2888 1.0809 37.389 6 1 Median 0.985 0.93662 13.199 6 0 Median 1.3706 1.2299 17.183 4 0 Linear 1.7797 1.7006 NaN 1 0 Median NaN NaN NaN 0 0 Median 260210000 125380000 134830000 60271000 30588000 29682000 44931000 18777000 26153000 131940000 66207000 65731000 20333000 9115100 11218000 2736500 693620 2042900 0 0 0 36065 649 37891 190351;190352;190353;190354;190355;190356;190357;190358;190359;190360;190361;190362;190363;190364;190365;190366;190367;190368;190369;190370;190371 193396;193397;193398;193399;193400;193401;193402;193403;193404;193405;193406;193407;193408;193409;193410;193411;193412;193413;193414;193415;193416;193417;193418;193419;193420 193417 25 VIGSELVQK CARAVANRTDACFIRVIGSELVQKYVGEGA DACFIRVIGSELVQKYVGEGARMVRELFEM R V I Q K Y 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 971.56515 P35998 P35998 240 248 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.0011692 84.498 By MS/MS By MS/MS 1 1 1.3029 1.2262 21.649 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0672 1.0521 NaN 1 0 Median 1.5906 1.429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13698000 6374800 7323000 0 0 0 0 0 0 4997800 1814300 3183500 8700100 4560500 4139600 0 0 0 0 0 0 36066 2253 37892 190372;190373 193421;193422;193423 193423 3 VIGSGCNLDSAR LTYVAWKISGFPKNRVIGSGCNLDSARFRY KNRVIGSGCNLDSARFRYLMGERLGVHPLS R V I A R F 1 1 1 1 1 0 0 2 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1247.5928 P07195;A0A3B3IS95;A8MW50;F5H5G7;F5H155;A0A087WUM2;G3XAP5;F5H245;Q6ZMR3;P07864;P00338 P00338 158 169 LDHB;LDHC;LDHAL6A;LDHA L-lactate dehydrogenase B chain;L-lactate dehydrogenase;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A chain no no 2 4.829E-06 135.55 By MS/MS By MS/MS By MS/MS 1 2 1 1.1832 1.0802 7.1014 4 Median 1.207 1.1272 NaN 1 0 Median 1.1832 1.0056 4.0831 2 0 Median 1.1568 1.1313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 456860000 204870000 252000000 54673000 23959000 30714000 393100000 177500000 215600000 9086300 3405300 5681000 0 0 0 0 0 0 0 0 0 36067 1813;1880 37893 190374;190375;190376;190377 193424;193425;193426;193427;193428;193429;193430;193431;193432 193427 9 VIGTLLGTVDK SIVDSYERRNEGAARVIGTLLGTVDKHSVE GAARVIGTLLGTVDKHSVEVTNCFSVPHNE R V I D K H 0 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 11 0 1114.6598 O00303 O00303 116 126 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.00015771 90.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.2063 1.1435 8.2517 7 Median 1.1187 1.0306 NaN 1 0 Median 1.2296 1.0494 3.7237 2 0 Median 1.136 1.1763 2.6947 2 0 Median 1.2754 1.1435 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5342 1.2825 NaN 1 0 Median 73606000 33529000 40078000 29990000 14188000 15802000 14316000 6133700 8182000 22934000 10456000 12479000 5761700 2534200 3227500 0 0 0 604710 217550 387160 36068 1457 37894 190378;190379;190380;190381;190382;190383;190384 193433;193434;193435;193436;193437;193438 193437 6 VIGYNLMQAMR LNFLQVPMCKEYEVKVIGYNLMQAMRFAVE YEVKVIGYNLMQAMRFAVEEINNDSSLLPG K V I M R F 1 1 1 0 0 1 0 1 0 1 1 0 2 0 0 0 0 0 1 1 0 0 11 0 1294.6526 Q8TE23 Q8TE23 66 76 TAS1R2 Taste receptor type 1 member 2 yes yes 2 0.0069141 63.486 By MS/MS 1 1.0656 0.95321 NaN 1 Median NaN NaN NaN 0 0 Median 1.0656 0.95321 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48627000 23958000 24669000 0 0 0 48627000 23958000 24669000 0 0 0 0 0 0 0 0 0 0 0 0 36069 3475 37895 190385 193439 193439 1740 1 VIHDNFGIVEGLMTTVHAITATQK SNASCTTNCLAPLAKVIHDNFGIVEGLMTT EGLMTTVHAITATQKTVDGPSGKLWRDGRG K V I Q K T 2 0 1 1 0 1 1 2 2 3 1 1 1 1 0 0 4 0 0 3 0 0 24 0 2594.3527 P04406;E7EUT5 P04406 163 186 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3;4 2.8215E-135 268.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 7 13 2 2 3 1 1.1345 0.96623 21.579 28 Median 1.1173 1.0306 10.899 7 0 Median 1.1294 0.94626 16.184 13 3 Median 1.1654 1.1159 3.0053 2 0 Median 0.81005 0.68573 61.395 2 1 Median 1.2663 1.2256 16.279 3 0 Median 1.0694 0.89225 NaN 1 0 Median 413440000 197000000 216440000 47957000 21222000 26734000 297530000 139770000 157760000 7451300 3299900 4151300 57995000 31498000 26497000 2168700 1069800 1098900 339590 136670 202930 36070 1850 37896;37897 190386;190387;190388;190389;190390;190391;190392;190393;190394;190395;190396;190397;190398;190399;190400;190401;190402;190403;190404;190405;190406;190407;190408;190409;190410;190411;190412;190413 193440;193441;193442;193443;193444;193445;193446;193447;193448;193449;193450;193451;193452;193453;193454;193455;193456;193457 193456 612 17 VIHDNFGIVEGLMTTVHAITATQKTVDGPSGK SNASCTTNCLAPLAKVIHDNFGIVEGLMTT AITATQKTVDGPSGKLWRDGRGALQNIIPA K V I G K L 2 0 1 2 0 1 1 4 2 3 1 2 1 1 1 1 5 0 0 4 0 0 32 1 3335.7184 P04406;E7EUT5 P04406 163 194 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 4;5 0.016895 14.593 By MS/MS 3 0.923 0.83396 9.8942 3 Median NaN NaN NaN 0 0 Median 0.923 0.83396 9.8942 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11091000 5293500 5797300 0 0 0 11091000 5293500 5797300 0 0 0 0 0 0 0 0 0 0 0 0 36071 1850 37898 190414;190415;190416 193458;193459 193459 2 VIHELANER LYVKDKLDETGVALKVIHELANERWDVCLT TGVALKVIHELANERWDVCLTLSEKGFQQI K V I E R W 1 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1079.5724 Q02880;E9PCY5 Q02880 309 317 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.015183 43.808 By matching By MS/MS By MS/MS 1 1 1 1.1768 1.0108 16.451 3 Median NaN NaN NaN 0 0 Median 1.1768 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3822 1.2093 NaN 1 0 Median 0.83294 0.87068 NaN 1 0 Median NaN NaN NaN 0 0 Median 2092300 1068800 1023400 0 0 0 245530 133340 112190 0 0 0 468420 187070 281350 1378300 748400 629910 0 0 0 36072 2704 37899 190417;190418;190419 193460;193461 193461 2 VIHLSNLPHSGYSDSAVLK GKPDQKFDQKQELGRVIHLSNLPHSGYSDS SNLPHSGYSDSAVLKLAEPYGKIKNYILMR R V I L K L 1 0 1 1 0 0 0 1 2 1 3 1 0 0 1 4 0 0 1 2 0 0 19 0 2036.0691 P43243;A8MXP9;A0A0R4J2E8;D6REM6;H0Y8T4;B3KM87;D6RBK5 P43243 497 515 MATR3 Matrin-3 yes no 2;3;4 8.9501E-18 129.37 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 8 6 12 6 0.92163 0.92844 35.332 34 Median 0.75361 0.73415 NaN 1 0 Median 1.1242 0.96489 NaN 1 0 Median 0.97606 1.0371 73.545 8 3 Median 1.15 1.0228 7.4659 6 0 Median 0.88813 0.90908 5.1024 12 0 Median 1.1179 0.91144 13.992 6 0 Median 1420500000 718480000 702060000 5618100 2631700 2986300 4334100 2123500 2210600 380190000 197900000 182290000 64088000 28900000 35188000 890900000 452160000 438740000 75413000 34768000 40644000 36073 297 37900 190420;190421;190422;190423;190424;190425;190426;190427;190428;190429;190430;190431;190432;190433;190434;190435;190436;190437;190438;190439;190440;190441;190442;190443;190444;190445;190446;190447;190448;190449;190450;190451;190452;190453 193462;193463;193464;193465;193466;193467;193468;193469;193470;193471;193472;193473;193474;193475;193476;193477;193478;193479;193480;193481;193482;193483;193484;193485;193486;193487;193488;193489;193490;193491 193476 30 VIHLVER LQDDKKLQEYNVGGKVIHLVERAPPQTHLP QEYNVGGKVIHLVERAPPQTHLPSGASSGT K V I E R A 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 2 0 0 7 0 864.51814 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;A0A1B0GX79;F6U341;F6X9W3;F6VEM6;F6WML8;A0A0G2JJR8;F6XTU0;F6U1F2;F6UR09;F6TC96 P46379 81 87 BAG6;BAT3 Large proline-rich protein BAG6 yes no 2 0.025514 54.205 By MS/MS By MS/MS By matching 1 1 1 1.084 0.90877 12.886 3 Plateau 1.0045 0.99838 NaN 1 0 Median 1.084 0.90877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94118 0.7738 NaN 1 0 Median 10466000 4833500 5632400 1743200 825080 918170 8207600 3765400 4442100 0 0 0 0 0 0 0 0 0 515110 242990 272120 36074 8 37901 190454;190455;190456 193492;193493;193494 193494 3 VIHSILNSPYAK EHYIPRAVLLDLEPRVIHSILNSPYAKLYN EPRVIHSILNSPYAKLYNPENIYLSEHGGG R V I A K L 1 0 1 0 0 0 0 0 1 2 1 1 0 0 1 2 0 0 1 1 0 0 12 0 1340.7452 P23258;Q9NRH3;K7EIS0;K7EKE5 P23258 73 84 TUBG1;TUBG2 Tubulin gamma-1 chain;Tubulin gamma-2 chain;Tubulin gamma chain yes no 2;3 5.3669E-10 179.1 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0344 0.98015 3.4452 7 Median 1.0126 0.95789 7.8876 2 0 Median NaN NaN NaN 0 0 Median 1.0186 0.98534 0.55684 2 0 Median 1.0795 0.97515 0.72268 2 0 Median 1.0203 0.97312 NaN 1 0 Median NaN NaN NaN 0 0 Median 251110000 121130000 129980000 10969000 5752800 5216000 0 0 0 52513000 25009000 27504000 184020000 88780000 95240000 3611400 1589500 2021900 0 0 0 36075 2108 37902 190457;190458;190459;190460;190461;190462;190463 193495;193496;193497;193498;193499;193500;193501;193502 193501 8 VIHVVTSEMDNYEPGVYTEK GLDRTAGAIRGRAARVIHVVTSEMDNYEPG TSEMDNYEPGVYTEKVLEATKLLSNTVMPR R V I E K V 0 0 1 1 0 0 3 1 1 1 0 1 1 0 1 1 2 0 2 4 0 0 20 0 2309.0886 P35221;G3XAM7 P35221 552 571 CTNNA1 Catenin alpha-1 yes no 3 2.9972E-19 113.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 4 2 1 0.89176 0.79079 28.51 13 Median 0.64891 0.62864 63.994 2 0 Median 1.1584 1.0378 35.94 2 0 Median 0.65033 0.70756 6.3717 2 0 Median 0.84926 0.72752 19.092 4 1 Median 0.82112 0.81523 11.677 2 0 Median 0.94601 0.79079 NaN 1 0 Median 73691000 41823000 31868000 21490000 12326000 9163900 1339000 569430 769560 34413000 19955000 14457000 7196900 3822900 3374000 8874500 4983300 3891200 378620 166050 212580 36076 2232 37903;37904 190464;190465;190466;190467;190468;190469;190470;190471;190472;190473;190474;190475;190476 193503;193504;193505;193506;193507;193508;193509;193510;193511;193512 193506 972 10 VIIEKYYTR DQGRVRTKTVKKAARVIIEKYYTRLGNDFH VKKAARVIIEKYYTRLGNDFHTNKRVCEEI R V I T R L 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 1 0 2 1 0 0 9 1 1183.6601 H3BNC9;P08708;H0YN88;A0A075B716;H0YN73;A0A0J9YYC4 H3BNC9 464 472 RPS17 40S ribosomal protein S17 yes no 2;3 0.0060444 68.735 By MS/MS By MS/MS 1 2 1.1816 1.1049 1.4482 2 Median 1.1036 1.0936 NaN 1 0 Median 1.2652 1.1162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9049400 4248500 4800900 5570200 3222200 2347900 3479300 1026300 2453000 0 0 0 0 0 0 0 0 0 0 0 0 36077 1214 37905 190477;190478;190479 193513;193514 193514 2 VIIIGSGVSGLAAAR IYKRIKPLPTKKTGKVIIIGSGVSGLAAAR VIIIGSGVSGLAAARQLQSFGMDVTLLEAR K V I A R Q 3 1 0 0 0 0 0 3 0 3 1 0 0 0 0 2 0 0 0 2 0 0 15 0 1382.8245 O60341;R4GMQ1 O60341 281 295 KDM1A Lysine-specific histone demethylase 1A yes no 2 3.049E-09 99.522 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.1362 1.1056 50.268 5 Median 1.1362 1.1056 NaN 1 0 Median 3.6783 3.2424 NaN 1 0 Median 0.93 0.98437 4.9784 2 0 Median 1.5368 1.3058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27498000 13347000 14151000 3198600 1486100 1712500 1376000 644160 731880 18727000 9622500 9104500 4196400 1594000 2602400 0 0 0 0 0 0 36078 1613 37906 190480;190481;190482;190483;190484 193515;193516;193517;193518 193516 4 VIILGDSGVGK ______________________________ VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ K V I G K T 0 0 0 1 0 0 0 3 0 2 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1056.6179 P51149;C9J592;C9J8S3;C9IZZ0;C9J4V0;C9J4S4;C9J7D1 P51149 11 21 RAB7A Ras-related protein Rab-7a yes no 2 0.00013635 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 2 2 2 1.2956 1.1157 30.205 17 Median 1.2143 1.1127 17.11 6 0 Median 1.375 1.1453 3.9779 4 0 Median 1.2678 1.1883 NaN 1 0 Median 1.0402 0.81836 43.073 2 0 Median 1.8228 1.8935 12.634 2 1 Median 0.96133 0.78905 32.802 2 0 Median 240660000 100450000 140200000 158120000 66264000 91857000 47674000 19457000 28217000 14238000 5942700 8295000 6364500 2786400 3578100 7685100 2550500 5134700 6573900 3454000 3119900 36079 2428 37907 190485;190486;190487;190488;190489;190490;190491;190492;190493;190494;190495;190496;190497;190498;190499;190500;190501 193519;193520;193521;193522;193523;193524;193525;193526;193527;193528;193529;193530;193531;193532;193533;193534;193535;193536 193522 18 VIILMLTNQTVHR SVLPGGVYVSETQNRVIILMLTNQTVHRLL NRVIILMLTNQTVHRLLLPHPSRMYRSELV R V I H R L 0 1 1 0 0 1 0 0 1 2 2 0 1 0 0 0 2 0 0 2 0 0 13 0 1536.881 Q12769;G3V198;E9PR16 Q12769 151 163 NUP160 Nuclear pore complex protein Nup160 yes no 3 0.00025765 72.265 By MS/MS By matching 2 1 1.3738 1.3614 7.8836 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2712 1.3977 10.94 2 1 Median 1.5851 1.3614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11420000 4722500 6697500 0 0 0 0 0 0 10838000 4518300 6320100 581620 204180 377450 0 0 0 0 0 0 36080 2756 37908;37909 190502;190503;190504 193537;193538 193538 1477 2 VIILSLDR EMRAPKHFLPEMLSKVIILSLDRSDEDKEK LPEMLSKVIILSLDRSDEDKEKASSLISLL K V I D R S 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 927.57532 P78344;D3DQV9;H0Y3P2;E9PKF8 P78344 585 592 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 yes no 2 0.021359 45.718 By MS/MS By matching By matching By matching By matching 1 4 1 1 1 1.0825 1.0399 20.557 8 Median 1.1943 1.1698 NaN 1 0 Median 1.1554 1.0399 10.971 4 0 Median 1.0489 1.1163 NaN 1 0 Median 0.86655 0.75531 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79837 0.67625 NaN 1 0 Median 12954000 6070600 6883200 2619600 1093500 1526000 2070700 1006600 1064100 7057900 3477200 3580700 1122000 452060 669950 0 0 0 83580 41178 42401 36081 2639 37910 190505;190506;190507;190508;190509;190510;190511;190512 193539;193540 193539 2 VIINSTITPNMTFTK VTRNSYRIISVDGAKVIINSTITPNMTFTK VIINSTITPNMTFTKTSQKFGQWADSRANT K V I T K T 0 0 2 0 0 0 0 0 0 3 0 1 1 1 1 1 4 0 0 1 0 0 15 0 1678.8964 Q9NSB8 Q9NSB8 55 69 HOMER2 Homer protein homolog 2 yes yes 2 0.0070594 46.706 By MS/MS 2 1.0149 1.1052 5.7553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0149 1.1052 5.7553 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5649500 3040000 2609500 0 0 0 0 0 0 5649500 3040000 2609500 0 0 0 0 0 0 0 0 0 36082 4100 37911 190513;190514 193541;193542 193541 2 VIISAPSADAPMFVMGVNHEK TMEKAGAHLQGGAKRVIISAPSADAPMFVM SADAPMFVMGVNHEKYDNSLKIISNASCTT R V I E K Y 3 0 1 1 0 0 1 1 1 2 0 1 2 1 2 2 0 0 0 3 0 0 21 0 2212.102 P04406;E7EUT5 P04406 119 139 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 4.8208E-26 151.54 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 8 6 2 2 0.80363 0.75428 14.661 25 Median 0.78412 0.70914 7.2724 7 0 Median 0.90018 0.76622 15.621 8 2 Median 0.81956 0.7899 24.461 6 1 Median 0.88974 0.75333 3.189 2 0 Median 0.77481 0.78006 2.6289 2 0 Median NaN NaN NaN 0 0 Median 765750000 408700000 357050000 457220000 243440000 213780000 161410000 85475000 75938000 133670000 72841000 60834000 6798200 3357500 3440800 6644600 3586000 3058600 0 0 0 36083 1850 37912;37913 190515;190516;190517;190518;190519;190520;190521;190522;190523;190524;190525;190526;190527;190528;190529;190530;190531;190532;190533;190534;190535;190536;190537;190538;190539 193543;193544;193545;193546;193547;193548;193549;193550;193551;193552;193553;193554;193555;193556;193557;193558;193559;193560;193561;193562;193563;193564;193565;193566;193567;193568;193569;193570;193571;193572;193573;193574 193557 610;611 32 VIISAPSADAPMFVMGVNHEKYDNSLK TMEKAGAHLQGGAKRVIISAPSADAPMFVM FVMGVNHEKYDNSLKIISNASCTTNCLAPL R V I L K I 3 0 2 2 0 0 1 1 1 2 1 2 2 1 2 3 0 0 1 3 0 0 27 1 2932.4463 P04406;E7EUT5 P04406 119 145 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 3;4 9.1292E-32 103.63 By MS/MS 7 0.8149 0.80362 157.44 7 Median 0.8149 0.80362 157.44 7 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 243230000 59901000 183330000 243230000 59901000 183330000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36084 1850 37914;37915 190540;190541;190542;190543;190544;190545;190546 193575;193576;193577;193578;193579;193580;193581 193577 610;611 7 VIITNFPAAK NDTAPRAMAVLESLRVIITNFPAAKSLDIQ LESLRVIITNFPAAKSLDIQVPNFPADETK R V I A K S 2 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 0 0 1 0 0 10 0 1072.6281 P47897;A0A1B0GVU9;B4DDN1;H7C0R3 P47897 577 586 QARS Glutamine--tRNA ligase yes no 2 0.0011347 68.224 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0092 0.9006 9.6945 5 Median 0.98529 0.87511 NaN 1 0 Median 1.1602 1.0199 11.218 2 0 Median 0.82606 0.9006 NaN 1 0 Median 1.0092 0.87683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35922000 17415000 18507000 26246000 12830000 13416000 5492300 2493900 2998400 2824000 1409800 1414200 1359400 681330 678070 0 0 0 0 0 0 36085 2356 37916 190547;190548;190549;190550;190551 193582;193583;193584;193585;193586;193587;193588;193589 193582 8 VIIVGLDNAGK IFAKLWSLFCNQEHKVIIVGLDNAGKTTIL QEHKVIIVGLDNAGKTTILYQFLMNEVVHT K V I G K T 1 0 1 1 0 0 0 2 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1097.6445 Q96KC2;Q9Y689 Q96KC2 19 29 ARL5B;ARL5A ADP-ribosylation factor-like protein 5B;ADP-ribosylation factor-like protein 5A yes no 2 0.013692 37.344 By MS/MS By matching By matching 2 1 1 1.0227 1.003 52.614 4 Median 1.2508 1.2078 72.48 2 0 Median 0.77355 0.67832 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3521 1.3905 NaN 1 0 Median NaN NaN NaN 0 0 Median 5901100 2711100 3190000 3938200 1804600 2133600 393270 247220 146060 0 0 0 0 0 0 1569600 659300 910350 0 0 0 36086 3693 37917 190552;190553;190554;190555 193590;193591 193590 2 VIIYQEK GEVTEECGKFGAVNRVIIYQEKQGEEEDAE GKFGAVNRVIIYQEKQGEEEDAEIIVKIFV R V I E K Q 0 0 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 1 1 0 0 7 0 891.50657 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 471 477 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.010865 81.297 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 3 1.1586 1.0197 9.2776 10 Median 1.127 1.0843 NaN 1 0 Median 1.0795 0.90789 NaN 1 0 Median 1.0698 1.0619 5.0904 2 1 Median 1.2665 1.0283 4.7935 3 1 Plateau NaN NaN NaN 0 0 Median 1.2263 1.0151 11.907 3 1 Plateau 40415000 19430000 20985000 3076100 1513400 1562700 7781800 3844800 3937000 18124000 8702100 9422000 7106800 3348800 3758000 0 0 0 4326600 2021200 2305400 36087 284 37918 190556;190557;190558;190559;190560;190561;190562;190563;190564;190565 193592;193593;193594;193595;193596;193597;193598;193599;193600;193601;193602 193593 11 VIKDFMIQGGDFTR TGEKGFGYKNSKFHRVIKDFMIQGGDFTRG RVIKDFMIQGGDFTRGDGTGGKSIYGERFP R V I T R G 0 1 0 2 0 1 0 2 0 2 0 1 1 2 0 0 1 0 0 1 0 0 14 1 1625.8236 P23284 P23284 96 109 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 3.0969E-07 128.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 6 7 4 5 3 1.2135 1.1792 23.166 31 Median 1.0668 1.0527 23.426 6 2 Median 1.4081 1.2744 8.9616 6 0 Median 1.1156 1.1998 22.616 7 0 Median 1.3719 1.2144 9.0048 4 0 Median 1.1049 1.1701 18.587 5 0 Median 1.2948 1.1804 49.537 3 0 Median 1145600000 541090000 604540000 227870000 109270000 118600000 17655000 6995000 10660000 708190000 341480000 366710000 115740000 48682000 67062000 73922000 33642000 40279000 2251300 1018300 1233000 36088 2109 37919;37920 190566;190567;190568;190569;190570;190571;190572;190573;190574;190575;190576;190577;190578;190579;190580;190581;190582;190583;190584;190585;190586;190587;190588;190589;190590;190591;190592;190593;190594;190595;190596 193603;193604;193605;193606;193607;193608;193609;193610;193611;193612;193613;193614;193615;193616;193617;193618;193619;193620;193621;193622;193623;193624;193625;193626;193627;193628;193629;193630;193631;193632;193633;193634;193635;193636;193637;193638;193639;193640 193613 877 38 VIKDFMIQGGDFTRGDGTGGK TGEKGFGYKNSKFHRVIKDFMIQGGDFTRG IQGGDFTRGDGTGGKSIYGERFPDENFKLK R V I G K S 0 1 0 3 0 1 0 6 0 2 0 2 1 2 0 0 2 0 0 1 0 0 21 2 2198.079 P23284 P23284 96 116 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3 4.2301E-07 48.824 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.16 1.2232 5.2142 5 Median 1.0851 1.1554 NaN 1 0 Median 1.5152 1.3137 NaN 1 0 Median 1.16 1.2988 NaN 1 0 Median 1.4807 1.2213 NaN 1 0 Median 1.0618 1.2232 NaN 1 0 Median NaN NaN NaN 0 0 Median 22997000 9837600 13160000 11353000 5205400 6147600 576630 180280 396350 5069200 1659500 3409800 3725300 1707900 2017400 2273300 1084500 1188800 0 0 0 36089 2109 37921 190597;190598;190599;190600;190601 193641 193641 1 VILAGNLLSHSTQSR LGDEGEQCSAAHVSRVILAGNLLSHSTQSR VILAGNLLSHSTQSRDSINKAKYLTKKTQA R V I S R D 1 1 1 0 0 1 0 1 1 1 3 0 0 0 0 3 1 0 0 1 0 0 15 0 1594.8791 F8W8R3;A0A087WWF6;P49005;C9JHC7 F8W8R3 241 255 POLD2 DNA polymerase delta subunit 2 yes no 2;3 7.9391E-08 91.076 By MS/MS By matching By matching By MS/MS 3 1 1 3 0.82451 0.77198 28.881 8 Median 0.82463 0.78377 1.4663 3 2 Median 1.0285 0.89839 NaN 1 0 Median 0.62267 0.62481 NaN 1 0 Median 0.5734 0.49512 34.296 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89835000 52902000 36933000 44700000 23683000 21017000 738320 390750 347570 5092700 3129300 1963400 39304000 25699000 13605000 0 0 0 0 0 0 36090 58 37922 190602;190603;190604;190605;190606;190607;190608;190609 193642;193643;193644;193645;193646 193646 5 VILDYNTAHNK FLAKSRPELLEYYIKVILDYNTAHNKVALS YYIKVILDYNTAHNKVALSECYTVASVAEM K V I N K V 1 0 2 1 0 0 0 0 1 1 1 1 0 0 0 0 1 0 1 1 0 0 11 0 1286.6619 Q14258 Q14258 459 469 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2;3 4.5469E-05 106.4 By MS/MS By MS/MS By matching 2 3 1 1.1736 1.095 30.831 6 Median 0.98576 0.97592 16.383 2 0 Median 1.3435 1.1533 7.4229 3 0 Median NaN NaN NaN 0 0 Median 0.6426 0.54492 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23439000 10249000 13190000 5046700 2671100 2375600 17911000 7315900 10596000 0 0 0 481160 261820 219340 0 0 0 0 0 0 36091 2870 37923 190610;190611;190612;190613;190614;190615 193647;193648;193649;193650;193651;193652;193653;193654;193655 193651 9 VILEIDNAR ELRDKILTATIENNRVILEIDNARLAADDF TIENNRVILEIDNARLAADDFRLKYENELA R V I A R L 1 1 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1041.5819 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9 K7ERE3 176 184 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.00091162 91.041 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 5 1 3 1.202 1.0315 100.2 12 Median 1.1124 1.096 14.508 2 0 Median 1.2102 1.0303 NaN 1 0 Median 1.1506 1.1855 3.3064 2 0 Median 1.154 0.99221 192 3 2 Median 1.4047 1.3984 NaN 1 0 Median 1.2044 1.0327 53.672 3 1 Plateau 157960000 64900000 93062000 9391800 4279300 5112500 3889100 1527300 2361800 51477000 21655000 29822000 47951000 18078000 29873000 19858000 7890800 11967000 25395000 11471000 13925000 + 36092 736 37924 190616;190617;190618;190619;190620;190621;190622;190623;190624;190625;190626;190627;190628;190629 193656;193657;193658;193659;193660;193661;193662;193663;193664;193665;193666;193667;193668;193669;193670;193671;193672;193673;193674;193675 193668 20 VILGSEAAQQHPEEVR DTKFVPNLPKEKLERVILGSEAAQQHPEEV ILGSEAAQQHPEEVRGLWQTCGELMFSLEP R V I V R G 2 1 0 0 0 2 3 1 1 1 1 0 0 0 1 1 0 0 0 2 0 0 16 0 1761.901 G3V1D3;G3V180;Q9NY33;E9PQ14;E9PPK9;E9PKK8;E9PNX5 G3V1D3 145 160 DPP3 Dipeptidyl peptidase 3 yes no 2;3 4.0789E-11 108.89 By MS/MS By MS/MS By matching 2 3 1 1.0052 0.94489 10.037 6 Median 0.95765 0.91512 0.72382 2 0 Median 1.1016 0.97064 12.258 3 0 Median 1.0384 1.0616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87502000 41659000 45843000 51965000 25066000 26898000 27557000 12809000 14748000 7980800 3783900 4197000 0 0 0 0 0 0 0 0 0 36093 1102 37925 190630;190631;190632;190633;190634;190635 193676;193677;193678;193679;193680;193681;193682;193683 193681 8 VILHGEHAVVHGK ______________________________ GKVILHGEHAVVHGKVALAVSLNLRTFLRL K V I G K V 1 0 0 0 0 0 1 2 3 1 1 1 0 0 0 0 0 0 0 3 0 0 13 0 1394.7783 F5H8H2;Q03426;F5H163;F5H368;A0A1W2PS16;F5GXC0;F5H092 F5H8H2 14 26 MVK Mevalonate kinase yes no 3 0.025047 21.55 By MS/MS By matching By matching 2 1 1 1.1601 1.1251 20.681 4 Median NaN NaN NaN 0 0 Median 1.0673 0.97972 32.82 2 0 Median 1.0142 1.0952 NaN 1 0 Median 1.327 1.1559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1864100 974140 889950 0 0 0 1564200 815980 748220 226880 125770 101110 73023 32393 40630 0 0 0 0 0 0 36094 1049 37926 190636;190637;190638;190639 193684;193685 193685 2 VILHLKEDQTEYLEER TVRTDTGEPMGRGTKVILHLKEDQTEYLEE ILHLKEDQTEYLEERRIKEIVKKHSQFIGY K V I E R R 0 1 0 1 0 1 4 0 1 1 3 1 0 0 0 0 1 0 1 1 0 0 16 1 2014.0371 P07900;G3V2J8;P08238;Q58FF7;Q58FF6 P07900 186 201 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB4P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4 no no 2;3;4 3.4207E-12 169.09 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 12 7 4 1 2 3 1.118 1.1345 25.841 29 Median 1.1513 1.1805 14.019 12 2 Median 1.0925 1.0727 20.503 7 1 Median 1.073 1.2139 16.91 4 2 Median 1.118 1.0584 NaN 1 0 Median 0.78804 0.8397 65.463 2 0 Median 1.0258 0.8893 52.575 3 0 Median 1174800000 544640000 630150000 899850000 412510000 487340000 136200000 66219000 69978000 99933000 47409000 52524000 2225100 999660 1225500 32012000 15206000 16806000 4567500 2296200 2271400 36095 1894;1899;3039 37927 190640;190641;190642;190643;190644;190645;190646;190647;190648;190649;190650;190651;190652;190653;190654;190655;190656;190657;190658;190659;190660;190661;190662;190663;190664;190665;190666;190667;190668 193686;193687;193688;193689;193690;193691;193692;193693;193694;193695;193696;193697;193698;193699;193700;193701;193702;193703;193704;193705;193706;193707;193708;193709;193710;193711;193712;193713;193714;193715;193716;193717;193718;193719;193720;193721;193722;193723;193724;193725;193726;193727;193728 193717 43 VILHLKEDQTEYLEERR TVRTDTGEPMGRGTKVILHLKEDQTEYLEE LHLKEDQTEYLEERRIKEIVKKHSQFIGYP K V I R R I 0 2 0 1 0 1 4 0 1 1 3 1 0 0 0 0 1 0 1 1 0 0 17 2 2170.1382 P07900;G3V2J8;P08238;Q58FF7 P07900 186 202 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 3;4;5 3.7278E-15 131.24 By MS/MS By matching By matching By matching 6 1 1 1 1.1679 1.178 34.376 9 Median 1.153 1.1635 34.817 6 0 Median 1.1851 1.4428 NaN 1 0 Median 0.96314 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5538 1.8177 NaN 1 0 Median NaN NaN NaN 0 0 Median 420820000 185330000 235490000 392870000 172780000 220090000 6509400 3227600 3281800 11155000 5280200 5874800 0 0 0 10285000 4043600 6241800 0 0 0 36096 1894;1899 37928 190669;190670;190671;190672;190673;190674;190675;190676;190677 193729;193730;193731;193732;193733;193734;193735;193736;193737;193738 193738 10 VILHSSSGNKEIISHISQHGGK GTSHGGSKKLLVELKVILHSSSGNKEIISH GNKEIISHISQHGGKWPYWFKKMENIQKLG K V I G K W 0 0 1 0 0 1 1 3 3 4 1 2 0 0 0 5 0 0 0 1 0 0 22 1 2327.2346 A6NHR9;J3KTL8;J3QSH1 A6NHR9 750 771 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 4;5 0.0096836 20.625 By MS/MS 2 0.93688 1.0786 6.228 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93688 1.0786 6.228 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6687400 3380100 3307400 0 0 0 0 0 0 6687400 3380100 3307400 0 0 0 0 0 0 0 0 0 36097 518 37929 190678;190679 193739;193740 193740 2 VILIQEQLSK PLDPGGYFIVKGVEKVILIQEQLSKNRIIV KGVEKVILIQEQLSKNRIIVEADRKGAVGA K V I S K N 0 0 0 0 0 2 1 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1169.702 Q9NW08 Q9NW08 177 186 POLR3B DNA-directed RNA polymerase III subunit RPC2 yes yes 2 0.0019484 61.999 By MS/MS By MS/MS 1 1 0.90249 0.85833 44.533 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57999 0.62647 NaN 1 0 Median 1.4043 1.176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3458400 1821600 1636800 0 0 0 0 0 0 2456100 1429000 1027100 1002300 392590 609670 0 0 0 0 0 0 36098 4144 37930 190680;190681 193741;193742 193742 2 VILLDVAR SPCNTLAAVTDDFGRVILLDVARGIAIRMW VTDDFGRVILLDVARGIAIRMWKGYRDAQI R V I A R G 1 1 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 8 0 897.56475 Q9H2M9 Q9H2M9 408 415 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.0033929 98.418 By MS/MS 1 1.0478 0.98802 NaN 1 Median 1.0478 0.98802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7376300 3317100 4059100 7376300 3317100 4059100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36099 3945 37931 190682 193743;193744 193743 2 VILLGDGGVGK ______________________________ SLFKVILLGDGGVGKSSLMNRYVTNKFDTQ K V I G K S 0 0 0 1 0 0 0 4 0 1 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1026.6073 P51151;A0A1B0GUI0;Q9NP90 P51151 10 20 RAB9A;RAB9B Ras-related protein Rab-9A;Ras-related protein Rab-9B yes no 2 0.00013837 88.948 By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 2 1.1238 1.0747 45.422 7 Median 1.1238 1.0399 NaN 1 0 Median 1.4227 1.1948 NaN 1 0 Median 1.0254 1.0747 NaN 1 0 Median 2.6245 2.0908 75.041 2 0 Median 0.94084 1.0073 1.7531 2 0 Median NaN NaN NaN 0 0 Median 165230000 84095000 81134000 29825000 14585000 15240000 5787400 2174500 3612900 3481600 1752400 1729100 2472300 917970 1554300 123660000 64665000 58998000 0 0 0 36100 2429 37932 190683;190684;190685;190686;190687;190688;190689 193745;193746;193747;193748 193745 4 VILPDDVR PVCVLGNYRDMGEHRVILPDDVRDFIDNLD RDMGEHRVILPDDVRDFIDNLDRPPGSSYF R V I V R D 0 1 0 2 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 2 0 0 8 0 925.52328 Q3YEC7;F2Z2T0;G3V154;H0Y7H6 Q3YEC7 185 192 RABL6 Rab-like protein 6 yes no 2 0.011909 56.011 By MS/MS By MS/MS 1 2 0.96465 0.81072 31.144 3 Median 0.77736 0.75171 NaN 1 0 Median 1.2227 1.0398 35.189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11008000 5597400 5410900 3964600 2242600 1722000 7043700 3354700 3688900 0 0 0 0 0 0 0 0 0 0 0 0 36101 3014 37933 190690;190691;190692 193749;193750;193751 193751 3 VILPVSVDEYQVGQLYSVAEASK ______________________________ EYQVGQLYSVAEASKNETGGGEGVEVLVNE R V I S K N 2 0 0 1 0 2 2 1 0 1 2 1 0 0 1 3 0 0 2 5 0 0 23 0 2493.3003 F5GWE5;Q00169;I3L471;I3L4U7 F5GWE5 9 31 PITPNA Phosphatidylinositol transfer protein alpha isoform yes no 3 0.056751 15.316 By MS/MS 1 1.0948 0.92262 NaN 1 Median NaN NaN NaN 0 0 Median 1.0948 0.92262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2494700 1220300 1274400 0 0 0 2494700 1220300 1274400 0 0 0 0 0 0 0 0 0 0 0 0 36102 997 37934 190693 193752 193752 1 VILQDFTGVPAVVDFAAMR VTQHKNIEVPFKPARVILQDFTGVPAVVDF DFTGVPAVVDFAAMRDAVKKLGGDPEKINP R V I M R D 3 1 0 2 0 1 0 1 0 1 1 0 1 2 1 0 1 0 0 4 0 0 19 0 2048.0765 P21399 P21399 83 101 ACO1 Cytoplasmic aconitate hydratase yes yes 2;3 1.1202E-07 74.326 By MS/MS By MS/MS By matching 3 2 1 0.96379 0.96864 12.416 6 Median 0.94377 0.94381 5.094 3 0 Median 1.2503 1.1134 4.3324 2 0 Median 0.79279 0.81591 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5092800 2462700 2630100 3244500 1644200 1600200 1633700 733000 900750 214590 85530 129060 0 0 0 0 0 0 0 0 0 36103 2090 37935 190694;190695;190696;190697;190698;190699 193753;193754;193755;193756;193757 193754 5 VILQPDVHPGNCWAFQGPQGFAVVR SLFGIPLWYHSQSPRVILQPDVHPGNCWAF NCWAFQGPQGFAVVRLSARIRPTAVTLEHV R V I V R L 2 1 1 1 1 3 0 3 1 1 1 0 0 2 3 0 0 1 0 4 0 0 25 0 2791.4017 Q9UH99;B0QY60 Q9UH99 590 614 SUN2 SUN domain-containing protein 2 yes no 3 0.061336 6.6491 By matching By MS/MS 1 1 0.56992 0.60383 3.4397 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58704 0.6187 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55331 0.58932 NaN 1 0 Median NaN NaN NaN 0 0 Median 3217900 2124600 1093300 0 0 0 0 0 0 1488700 1033100 455560 0 0 0 1729200 1091500 637700 0 0 0 36104 4271 37936 190700;190701 193758 193758 1 VIMAELATK GDAYKKKGLIPAYHRVIMAELATKNSKWVE IPAYHRVIMAELATKNSKWVEVDTWESLQK R V I T K N 2 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 0 0 9 0 974.54705 Q9HAN9;B1AN62 Q9HAN9 67 75 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes no 2 0.042986 32.892 By matching By MS/MS 1 1 0.85829 0.72719 2.5691 2 Median NaN NaN NaN 0 0 Median 0.87387 0.74052 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84298 0.7141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2738000 1416700 1321300 0 0 0 1198900 644140 554740 0 0 0 1539100 772600 766540 0 0 0 0 0 0 36105 4010 37937 190702;190703 193759 193759 1 VIMDYESLEK HCGLRVFGFSLITNKVIMDYESLEKANHEE LITNKVIMDYESLEKANHEEVLAAGKQAAQ K V I E K A 0 0 0 1 0 0 2 0 0 1 1 1 1 0 0 1 0 0 1 1 0 0 10 0 1225.59 P00491 P00491 245 254 PNP Purine nucleoside phosphorylase yes yes 2 0.00039083 78.934 By MS/MS By MS/MS 1 1 1.1477 1.0699 6.3871 2 Median 1.2322 1.1193 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0689 1.0227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24746000 11285000 13461000 20975000 9412700 11563000 0 0 0 3770400 1872000 1898400 0 0 0 0 0 0 0 0 0 36106 1821 37938 190704;190705 193760;193761;193762 193761 3 VIMELFDNDQVGKDEFLGR EIYGEPQTVLQNPPKVIMELFDNDQVGKDE LFDNDQVGKDEFLGRSIFSPVVKLNSEMDI K V I G R S 0 1 1 3 0 1 2 2 0 1 2 1 1 2 0 0 0 0 0 2 0 0 19 1 2224.0834 Q9NZM1;H0YD14 Q9NZM1 1211 1229 MYOF Myoferlin yes no 3 0.066021 8.7918 By MS/MS By matching 1 1 0.94967 1.0085 42.245 2 Median 0.73379 0.74806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2291 1.3596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3105900 1514200 1591700 2410200 1245800 1164400 0 0 0 695710 268370 427330 0 0 0 0 0 0 0 0 0 36107 4192 37939 190706;190707 193763 193763 1 VIMGEEVEPVGLMTGSGVVGVK VSKTLGVDLVALATRVIMGEEVEPVGLMTG EPVGLMTGSGVVGVKVPQFSFSRLAGADVV R V I V K V 0 0 0 0 0 0 3 5 0 1 1 1 2 0 1 1 1 0 0 6 0 0 22 0 2186.1327 F8VPD4;P27708 F8VPD4 1178 1199 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2;3 4.0327E-12 75.669 By MS/MS 3 1.1849 1.147 7.9492 3 Median 1.1849 1.147 7.9492 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18707000 7371700 11335000 18707000 7371700 11335000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36108 1057 37940 190708;190709;190710 193764;193765;193766;193767;193768 193765 5 VIMITGDNK EVASSVKLCRQAGIRVIMITGDNKGTAVAI RQAGIRVIMITGDNKGTAVAICRRIGIFGQ R V I N K G 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 0 1 0 0 1 0 0 9 0 989.52157 P16615;H7C5W9;O14983 P16615 620 628 ATP2A2;ATP2A1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 yes no 2 0.00082669 95.741 By MS/MS 3 1.1303 0.97767 3.2541 3 Plateau NaN NaN NaN 0 0 Median 1.1303 0.97767 3.2541 3 1 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22504000 10083000 12421000 0 0 0 22504000 10083000 12421000 0 0 0 0 0 0 0 0 0 0 0 0 36109 2031 37941 190711;190712;190713 193769;193770;193771;193772 193770 4 VIMSDLQIR TDLAVLQWVEELEQRVIMSDLQIRGWTCPS EELEQRVIMSDLQIRGWTCPSPDSTREDLA R V I I R G 0 1 0 1 0 1 0 0 0 2 1 0 1 0 0 1 0 0 0 1 0 0 9 0 1073.5903 J3KPG5;F8VU39;Q9UIF9;A0A0C4DGI9 J3KPG5 1498 1506 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0012806 83.265 By MS/MS By MS/MS 1 1 2.2779 2.1198 35.958 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5837 1.6439 NaN 1 0 Median 3.2765 2.7335 NaN 1 0 Median 7331600 3277700 4053900 0 0 0 0 0 0 0 0 0 0 0 0 6767300 3079800 3687500 564230 197850 366380 36110 1065 37942 190714;190715 193773;193774;193775 193774 3 VIMVGSGGVGK AANKPKGQNSLALHKVIMVGSGGVGKSALT ALHKVIMVGSGGVGKSALTLQFMYDEFVED K V I G K S 0 0 0 0 0 0 0 4 0 1 0 1 1 0 0 1 0 0 0 3 0 0 11 0 1002.5532 P11233;H7C3P7;P11234;C9J6B1;C9JQB3;F8WEQ6;C9JPE8;C9JYR1 P11233 17 27 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B no no 2 0.00013666 99.802 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1 1 1.1719 1.167 19.265 7 Median 0.90871 0.84814 22.652 2 1 Median 1.4198 1.1863 NaN 1 0 Median 1.1444 1.0726 NaN 1 0 Median 1.4074 1.167 NaN 1 1 Median 1.1719 1.1941 NaN 1 0 Median 1.5537 1.2839 NaN 1 0 Median 82468000 38301000 44167000 30201000 14436000 15765000 13592000 5428500 8163400 12974000 5909100 7065000 7083300 4590000 2493300 11462000 5510300 5952100 7155300 2427200 4728100 36111 1958;1959 37943;37944 190716;190717;190718;190719;190720;190721;190722 193776;193777;193778;193779;193780;193781;193782;193783;193784;193785 193778 735 10 VIMVTGDHPITAK AVPDAVGKCRSAGIKVIMVTGDHPITAKAI IKVIMVTGDHPITAKAIAKGVGIISEGNET K V I A K A 1 0 0 1 0 0 0 1 1 2 0 1 1 0 1 0 2 0 0 2 0 0 13 0 1380.7435 P05023;M0R116;A0A2R8YEY8;A0A0A0MT26;P13637;B1AKY9;P50993;H0Y7C1;Q13733;P20648;P54707 P05023 613 625 ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP4A;ATP12A Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 1;Potassium-transporting ATPase alpha chain 2 yes no 2;3 2.361E-08 125.74 By MS/MS By MS/MS 5 9 1.0214 0.8993 54.674 14 Median 1.121 1.0029 26.629 5 2 Median 1.0209 0.88073 61.732 9 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 507690000 237760000 269930000 107200000 49875000 57328000 400490000 187890000 212600000 0 0 0 0 0 0 0 0 0 0 0 0 36112 1857 37945 190723;190724;190725;190726;190727;190728;190729;190730;190731;190732;190733;190734;190735;190736 193786;193787;193788;193789;193790;193791;193792;193793;193794;193795;193796;193797;193798;193799;193800 193788 14 VINAAHSFYNGTTTLPISDEDR QSVEEALKKLGIQVKVINAAHSFYNGTTTL FYNGTTTLPISDEDRTPRKRISKTLNMTTS K V I D R T 2 1 2 2 0 0 1 1 1 2 1 0 0 1 1 2 3 0 1 1 0 0 22 0 2420.1608 P49915 P49915 296 317 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 2.8684E-26 104.63 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.94216 0.90314 14.124 5 Median 0.94216 0.89149 NaN 1 0 Median 1.2275 1.0648 NaN 1 0 Median 0.8896 0.90314 NaN 1 1 Median 1.1128 0.94348 24.52 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30545000 14776000 15769000 10365000 5103000 5262100 2909400 1453000 1456400 15212000 7186600 8025600 2058300 1033400 1024900 0 0 0 0 0 0 36113 2405 37946 190737;190738;190739;190740;190741 193801;193802;193803 193802 3 VINDKHDDVMAK ITCPKVNQFRQLYSKVINDKHDDVMAKFGA YSKVINDKHDDVMAKFGAILAQGILDAGGH K V I A K F 1 0 1 3 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 2 0 0 12 1 1383.6816 A0A087WW66;Q99460 A0A087WW66 716 727 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2;3 0.00019733 67.385 By matching By MS/MS 2 2 1.0653 1.0852 8.3661 4 Median 1.0653 1.1324 0.11369 2 0 Median 1.0651 0.99452 6.4411 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8143900 3982500 4161400 1041000 477760 563220 7102900 3504700 3598200 0 0 0 0 0 0 0 0 0 0 0 0 36114 54 37947 190742;190743;190744;190745 193804;193805;193806 193804 3 VINEEYK ______________________________ FEDTVEERVINEEYKIWKKNTPFLYDLVMT R V I Y K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 893.44945 Q09028;E9PNS6;E9PNS2;E9PIC4;Q16576;E9PC52;C9JAJ9 Q16576 15 21 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.0054115 97.071 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 2 2 1.2602 1.0787 10.266 9 Median 1.088 1.04 NaN 1 0 Median 1.2729 1.0787 NaN 1 0 Median 0.97253 0.93626 NaN 1 0 Median 1.2432 1.0986 2.5984 2 0 Median 1.1149 1.1094 23.332 2 0 Median 1.3514 1.1226 4.8805 2 0 Median 45956000 21447000 24509000 3176000 1468600 1707400 12181000 5236300 6945200 17800000 8777700 9022300 2169500 897590 1271900 8957900 4390000 4567900 1671300 677130 994190 36115 2746;2990 37948 190746;190747;190748;190749;190750;190751;190752;190753;190754 193807;193808;193809;193810;193811;193812;193813;193814 193813 8 VINEEYKIWK ______________________________ TVEERVINEEYKIWKKNTPFLYDLVMTHAL R V I W K K 0 0 1 0 0 0 2 0 0 2 0 2 0 0 0 0 0 1 1 1 0 0 10 1 1320.7078 Q09028;E9PNS6;E9PNS2;E9PIC4;Q16576;E9PC52;C9JAJ9 Q16576 15 24 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 3 0.001457 52.79 By matching By MS/MS By matching 1 1 1 1.1212 1.0763 1.4041 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1212 1.0649 NaN 1 0 Median 1.0082 1.0763 NaN 1 0 Median 1.2286 1.095 NaN 1 0 Median 16535000 7557800 8977300 0 0 0 0 0 0 0 0 0 3720600 1533900 2186700 12154000 5760900 6392700 660890 262940 397950 36116 2746;2990 37949 190755;190756;190757 193815;193816 193815 2 VINEPTAAALAYGLDK ATKDAGQISGLNVLRVINEPTAAALAYGLD INEPTAAALAYGLDKSEDKVIAVYDLGGGT R V I D K S 4 0 1 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 1 1 0 0 16 0 1644.8723 P38646 P38646 219 234 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 1.0226E-09 101.39 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 2 2 1 1 1.073 1.0035 21.943 10 Median 1.006 0.91807 26.423 4 0 Median 1.2158 1.0208 2.6059 2 0 Median 1.0321 1.0605 14.036 2 0 Median 1.347 1.1954 NaN 1 0 Median 1.1571 1.1953 NaN 1 1 Median NaN NaN NaN 0 0 Median 152540000 71628000 80914000 75925000 36566000 39359000 37019000 16117000 20902000 34425000 16745000 17680000 233070 122970 110100 4939700 2077300 2862400 0 0 0 36117 2277 37950 190758;190759;190760;190761;190762;190763;190764;190765;190766;190767 193817;193818;193819;193820;193821;193822;193823;193824;193825;193826;193827 193818 11 VINEPTAAALAYGLDKSEDK ATKDAGQISGLNVLRVINEPTAAALAYGLD TAAALAYGLDKSEDKVIAVYDLGGGTFDIS R V I D K V 4 0 1 2 0 0 2 1 0 1 2 2 0 0 1 1 1 0 1 1 0 0 20 1 2104.0688 P38646 P38646 219 238 HSPA9 Stress-70 protein, mitochondrial yes yes 3 9.1525E-09 68.567 By MS/MS By matching By matching 2 1 1 0.79214 0.77895 38.45 4 Median 0.79214 0.77895 35.96 2 0 Median 1.321 1.235 NaN 1 0 Median 0.49937 0.56218 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28885000 14108000 14777000 17227000 8542200 8685000 6686200 2414800 4271400 4971900 3151500 1820500 0 0 0 0 0 0 0 0 0 36118 2277 37951 190768;190769;190770;190771 193828;193829 193829 2 VINLNDNTFTEK ITALAQAFAVNPLLRVINLNDNTFTEKGAV LLRVINLNDNTFTEKGAVAMAETLKTLRQV R V I E K G 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1406.7042 P46060;H0Y4Q3 P46060 240 251 RANGAP1 Ran GTPase-activating protein 1 yes no 2 1.0587E-09 176.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 6 2 3 1.0941 0.96559 38.504 18 Median 1.3214 1.2116 14.155 2 0 Median 1.0921 0.93333 7.3115 2 1 Median 1.2324 1.1809 13.416 3 0 Median 1.0586 0.91109 25.074 6 2 Median 1.5873 1.5665 11.637 2 0 Median 0.57207 0.50314 45.534 3 0 Median 345050000 155950000 189100000 39411000 16808000 22603000 25600000 11817000 13783000 212890000 96635000 116260000 42612000 20397000 22215000 20540000 7660700 12880000 3991600 2633700 1357800 36119 2336 37952 190772;190773;190774;190775;190776;190777;190778;190779;190780;190781;190782;190783;190784;190785;190786;190787;190788;190789 193830;193831;193832;193833;193834;193835;193836;193837;193838;193839;193840;193841;193842 193834 13 VINQILTEMDGMSTK ARGGNIGDGGGAADRVINQILTEMDGMSTK VINQILTEMDGMSTKKNVFIIGATNRPDII R V I T K K 0 0 1 1 0 1 1 1 0 2 1 1 2 0 0 1 2 0 0 1 0 0 15 0 1678.827 P55072 P55072 600 614 VCP Transitional endoplasmic reticulum ATPase yes yes 2;3 2.8151E-10 165.66 By MS/MS By MS/MS By MS/MS 7 5 1 1.2094 1.0608 36.257 13 Median 1.2094 1.169 34.59 7 0 Median 1.1291 1.0194 37.76 5 0 Median 1.2664 1.3972 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75327000 33766000 41561000 46931000 20936000 25995000 23984000 10886000 13098000 4412500 1943900 2468500 0 0 0 0 0 0 0 0 0 36120 2494 37953;37954 190790;190791;190792;190793;190794;190795;190796;190797;190798;190799;190800;190801;190802 193843;193844;193845;193846;193847;193848;193849;193850;193851;193852 193847 1180;1181 10 VINQILTEMDGMSTKK ARGGNIGDGGGAADRVINQILTEMDGMSTK INQILTEMDGMSTKKNVFIIGATNRPDIID R V I K K N 0 0 1 1 0 1 1 1 0 2 1 2 2 0 0 1 2 0 0 1 0 0 16 1 1806.922 P55072 P55072 600 615 VCP Transitional endoplasmic reticulum ATPase yes yes 3 3.0454E-05 63.631 By MS/MS By matching By matching 3 1 1 1.0703 1.0127 39.976 5 Median 1.0703 1.0127 7.2024 3 1 Median 2.2082 2.1376 NaN 1 0 Median 0.66259 0.72818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53932000 26793000 27139000 46179000 23470000 22709000 5791200 2309400 3481800 1961400 1013600 947870 0 0 0 0 0 0 0 0 0 36121 2494 37955 190803;190804;190805;190806;190807 193853;193854;193855 193853 3 VINQMLEFAFR AQILKDMGITEYEPRVINQMLEFAFRYVTT YEPRVINQMLEFAFRYVTTILDDAKIYSSH R V I F R Y 1 1 1 0 0 1 1 0 0 1 1 0 1 2 0 0 0 0 0 1 0 0 11 0 1366.7067 Q9HBM6;D6RHW1;D6RIY1;D6RGK3;D6RIV9 Q9HBM6 35 45 TAF9B;TAF9 Transcription initiation factor TFIID subunit 9B no no 2 0.00059752 66.435 By MS/MS By matching By matching By matching 1 1 1 1 0.77819 0.71367 87.66 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3175 1.2796 NaN 1 0 Median 1.4927 1.257 NaN 1 0 Median 0.21698 0.21719 NaN 1 0 Median 0.45964 0.40519 NaN 1 0 Median 2803300 1470200 1333100 0 0 0 0 0 0 1928900 859550 1069400 122390 55020 67375 679390 531710 147690 72570 23884 48685 36122 4022 37956 190808;190809;190810;190811 193856;193857 193857 2 VINQYQVVKPTAER IGLNGWLRIDDQTVKVINQYQVVKPTAERT KVINQYQVVKPTAERTAYLLYYRRVDLL__ K V I E R T 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 1 0 1 3 0 0 14 1 1643.8995 Q14694 Q14694 772 785 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 2;3 5.9529E-05 88.441 By MS/MS By MS/MS 3 1 0.84047 0.87448 9.536 3 Median 0.83979 0.87376 0.1157 2 1 Median NaN NaN NaN 0 0 Median 0.90754 1.0307 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12789000 6190900 6598500 8744400 4433700 4310700 0 0 0 4045000 1757200 2287800 0 0 0 0 0 0 0 0 0 36123 2894 37957 190812;190813;190814;190815 193858;193859;193860;193861 193858 4 VINSVDIK WDSGSSVGEITGHNKVINSVDIKQSRPYRL EITGHNKVINSVDIKQSRPYRLATGSDDNC K V I I K Q 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 8 0 886.51238 O75083;D6RD66 O75083 148 155 WDR1 WD repeat-containing protein 1 yes no 2 0.032019 58.815 By MS/MS By MS/MS 1 1 1.2386 1.1034 8.6869 2 Median 1.2379 1.1733 NaN 1 1 Median 1.2394 1.0377 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20450000 8909200 11540000 8065800 3321000 4744900 12384000 5588300 6795500 0 0 0 0 0 0 0 0 0 0 0 0 36124 1643 37958 190816;190817 193862;193863 193862 2 VINTPEVLR QLMRVYGALMWSLGKVINTPEVLRVYIGSF MWSLGKVINTPEVLRVYIGSFWAQPLQNTD K V I L R V 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1039.6026 Q9H223 Q9H223 246 254 EHD4 EH domain-containing protein 4 yes yes 2 0.0019606 75.738 By MS/MS By matching By MS/MS By matching By MS/MS 1 2 1 1 1 0.85636 0.78626 24.842 6 Median 1.0856 1.0535 NaN 1 1 Median 0.68961 0.59494 19.056 2 0 Median 0.86103 0.886 NaN 1 0 Median 0.85171 0.71075 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0105 0.86979 NaN 1 1 Median 20738000 10544000 10195000 5315400 2453200 2862200 4450300 2658700 1791600 5250900 2755200 2495700 1650300 775220 875100 0 0 0 4071500 1901200 2170300 36125 3939 37959 190818;190819;190820;190821;190822;190823 193864;193865;193866 193865 3 VINVETNR ETGHFVLYGTMLGIKVINVETNRCVRILGK GTMLGIKVINVETNRCVRILGKQENIRVMQ K V I N R C 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 943.50869 Q96BP3;F5H7P7;H0Y8N5 Q96BP3 380 387 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0048619 79.116 By matching By MS/MS 1 1 1.1438 1.0824 8.5062 2 Median NaN NaN NaN 0 0 Median 1.2188 1.0192 NaN 1 0 Median 1.0734 1.1495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4434800 2194900 2239900 0 0 0 1962300 1006300 956060 2472500 1188600 1283900 0 0 0 0 0 0 0 0 0 36126 3609 37960 190824;190825 193867;193868 193867 2 VIPAADLSQQISTAGTEASGTGNMK KVIFLENYRVSLAEKVIPAADLSQQISTAG ISTAGTEASGTGNMKFMLNGALTIGTMDGA K V I M K F 4 0 1 1 0 2 1 3 0 2 1 1 1 0 1 3 3 0 0 1 0 0 25 0 2446.201 P11216;H0Y4Z6 P11216 657 681 PYGB Glycogen phosphorylase, brain form;Alpha-1,4 glucan phosphorylase yes no 2;3 8.0183E-17 68.944 By MS/MS By matching By matching 2 1 1 1.0842 1.0983 11.097 4 Median 1.0024 0.98349 7.9008 2 0 Median 1.3509 1.1826 NaN 1 0 Median 1.0976 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15868000 7269500 8598400 9986600 4679700 5306900 4076300 1764800 2311500 1805000 824980 980000 0 0 0 0 0 0 0 0 0 36127 1956 37961 190826;190827;190828;190829 193869;193870;193871 193870 3 VIPATDLSEQISTAGTEASGTGNMK KVIFLENYRVSLAEKVIPATDLSEQISTAG ISTAGTEASGTGNMKFMLNGALTIGTMDGA K V I M K F 3 0 1 1 0 1 2 3 0 2 1 1 1 0 1 3 4 0 0 1 0 0 25 0 2477.1955 P06737;E9PK47 P06737 657 681 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2;3 1.1512E-20 91.616 By MS/MS By matching By MS/MS 2 2 2 0.92944 0.90259 8.4805 6 Median 0.86357 0.83548 0.17047 2 0 Median 1.0082 0.9109 2.5184 2 0 Median 0.91759 0.9783 10.169 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34825000 17500000 17326000 30224000 14954000 15271000 636460 310000 326470 3964700 2236000 1728700 0 0 0 0 0 0 0 0 0 36128 1874 37962 190830;190831;190832;190833;190834;190835 193872;193873;193874;193875;193876;193877 193874 6 VIPDFVCQGGDITK TGEKGFGFKNSIFHRVIPDFVCQGGDITKH RVIPDFVCQGGDITKHDGTGGQSIYGDKFE R V I T K H 0 0 0 2 1 1 0 2 0 2 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1547.7654 P49792 P49792 3116 3129 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.306E-07 114.86 By MS/MS 1 0.93713 1.0013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93713 1.0013 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14128000 6789800 7338000 0 0 0 0 0 0 14128000 6789800 7338000 0 0 0 0 0 0 0 0 0 36129 2401 37963 190836 193878 193878 1 VIPEDGPAAQNPENVKR RSSFDEMLPGTHFQRVIPEDGPAAQNPENV PEDGPAAQNPENVKRLLFCTGKVYYDLTRE R V I K R L 2 1 2 1 0 1 2 1 0 1 0 1 0 0 3 0 0 0 0 2 0 0 17 1 1832.9381 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 895 911 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 3 0.00015079 55.589 By MS/MS By MS/MS 1 1 0.68178 0.67389 12.996 2 Median 0.59104 0.61473 NaN 1 0 Median 0.78644 0.73875 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7760700 4614600 3146100 3440800 2000100 1440600 4319900 2614500 1705400 0 0 0 0 0 0 0 0 0 0 0 0 36130 912 37964 190837;190838 193879;193880;193881 193881 3 VIPELNGK NIIPASTGAAKAVGKVIPELNGKLTGMAFR AAKAVGKVIPELNGKLTGMAFRVPTANVSV K V I G K L 0 0 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 868.50182 P04406;E7EUT5 P04406 220 227 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 0.0024066 118.01 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 2 1.051 0.92253 83.836 7 Median 1.0073 0.92253 NaN 1 0 Median 1.0753 0.90683 100.52 4 1 Median 1.5166 1.4618 NaN 1 0 Median 0.46918 0.43783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257110000 117480000 139630000 86731000 41319000 45412000 137820000 61251000 76572000 29624000 12920000 16704000 2931200 1986300 944920 0 0 0 0 0 0 36131 1850 37965 190839;190840;190841;190842;190843;190844;190845;190846 193882;193883;193884;193885;193886;193887;193888;193889;193890;193891;193892;193893;193894 193883 13 VIPELNGKLTGMAFR NIIPASTGAAKAVGKVIPELNGKLTGMAFR VIPELNGKLTGMAFRVPTANVSVVDLTCRL K V I F R V 1 1 1 0 0 0 1 2 0 1 2 1 1 1 1 0 1 0 0 1 0 0 15 1 1644.9021 P04406;E7EUT5 P04406 220 234 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 0.00047883 69.01 By MS/MS By matching 3 1 0.96808 0.99411 21.883 4 Median 0.9082 0.89398 22.132 3 1 Median 1.2148 1.1375 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9525100 4995500 4529600 9190800 4845500 4345300 334250 149990 184250 0 0 0 0 0 0 0 0 0 0 0 0 36132 1850 37966 190847;190848;190849;190850 193895;193896;193897 193897 3 VIPLDRDNKELK ECRMIGLRLYDGLFKVIPLDRDNKELKAFN LFKVIPLDRDNKELKAFNIRLEELHVIDVK K V I L K A 0 1 1 2 0 0 1 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 12 2 1438.8144 Q16531;F5GY55;F5H2L3;F5GWI0 Q16531 142 153 DDB1 DNA damage-binding protein 1 yes no 3 0.036307 20.788 By MS/MS 1 0.579 0.65976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.579 0.65976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2162300 1157100 1005200 0 0 0 0 0 0 2162300 1157100 1005200 0 0 0 0 0 0 0 0 0 36133 2985 37967 190851 193898 193898 1 VIPNGDGTFR KLYAQDADGCPIDIKVIPNGDGTFRCSYVP PIDIKVIPNGDGTFRCSYVPTKPIKHTIII K V I F R C 0 1 1 1 0 0 0 2 0 1 0 0 0 1 1 0 1 0 0 1 0 0 10 0 1074.5458 Q14315 Q14315 718 727 FLNC Filamin-C yes yes 2 0.0035251 56.432 By MS/MS 1 0.95852 0.77575 NaN 1 Median NaN NaN NaN 0 0 Median 0.95852 0.77575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11687000 4583000 7104200 0 0 0 11687000 4583000 7104200 0 0 0 0 0 0 0 0 0 0 0 0 36134 2871 37968 190852 193899;193900 193899 2 VIPVMLMGK KFVSFPTQVLAKASKVIPVMLMGKLVSRRS LAKASKVIPVMLMGKLVSRRSYEHWEYLTA K V I G K L 0 0 0 0 0 0 0 1 0 1 1 1 2 0 1 0 0 0 0 2 0 0 9 0 986.56568 Q8TB61 Q8TB61 220 228 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 yes yes 2 0.006443 54.549 By MS/MS By MS/MS 2 2 1.2118 1.1176 7.1517 4 Median 1.0971 1.0662 11.338 2 0 Median 1.2843 1.1176 1.6427 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25653000 11362000 14291000 19454000 8784400 10670000 6199000 2577400 3621600 0 0 0 0 0 0 0 0 0 0 0 0 36135 3458 37969 190853;190854;190855;190856 193901;193902;193903 193901 3 VIPYIASQFR LKGDYRTGKRLNIRKVIPYIASQFRKDKIW LNIRKVIPYIASQFRKDKIWLRRTKPSKRQ K V I F R K 1 1 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 1 0 0 10 0 1192.6604 Q9NU22 Q9NU22 5358 5367 MDN1 Midasin yes yes 2 0.00038325 79.906 By MS/MS By matching 1 1 1.137 1.1078 14.553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9518 0.99943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3582 1.2278 NaN 1 0 Median 20689000 10180000 10510000 0 0 0 0 0 0 20596000 10152000 10444000 0 0 0 0 0 0 93257 27073 66184 36136 4112 37970 190857;190858 193904;193905 193904 2 VIPYIASQFRK LKGDYRTGKRLNIRKVIPYIASQFRKDKIW NIRKVIPYIASQFRKDKIWLRRTKPSKRQY K V I R K D 1 1 0 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 1 1 0 0 11 1 1320.7554 Q9NU22 Q9NU22 5358 5368 MDN1 Midasin yes yes 3 8.6652E-05 71.221 By MS/MS 1 0.93531 1.0831 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93531 1.0831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5878700 3072700 2806100 0 0 0 0 0 0 5878700 3072700 2806100 0 0 0 0 0 0 0 0 0 36137 4112 37971 190859 193906 193906 1 VIQAGMFDQK KILAAAKYKLNVDQKVIQAGMFDQKSSSHE NVDQKVIQAGMFDQKSSSHERRAFLQAILE K V I Q K S 1 0 0 1 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 10 0 1135.5696 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;P51531;F6VDE0;A0A0U1RQZ9 P51532 1228 1237 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.00056301 112.84 By matching By MS/MS By MS/MS By matching By MS/MS 1 3 3 1 1 0.98606 0.99873 18.268 8 Median 0.93102 0.82418 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95747 1.0577 9.3855 3 0 Median 1.0407 0.94308 27.734 3 0 Median 1.0469 1.1065 NaN 1 0 Median NaN NaN NaN 0 0 Median 122300000 60129000 62173000 696980 304410 392570 0 0 0 102250000 51003000 51242000 18283000 8253900 10029000 1077000 567110 509850 0 0 0 36138 366;2433 37972;37973 190860;190861;190862;190863;190864;190865;190866;190867;190868 193907;193908;193909;193910;193911;193912;193913;193914;193915 193910 175 9 VIQALAMK VLDQQQTPSRLAVTRVIQALAMKGDVENIE SRLAVTRVIQALAMKGDVENIEVVQKMLNG R V I M K G 2 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 8 0 872.51536 P42704 P42704 1145 1152 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0036575 86.086 By MS/MS By MS/MS By matching 1 1 1 1.4128 1.2186 2.8058 3 Plateau 1.2105 1.1742 NaN 1 0 Median 1.4457 1.2186 NaN 1 0 Median 1.1469 1.2406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32463000 13451000 19013000 8099200 3438600 4660600 21566000 8667400 12898000 2798500 1344600 1453900 0 0 0 0 0 0 0 0 0 36139 2315 37974 190869;190870;190871 193916;193917;193918;193919 193918 4 VIQALAMKGDVENIEVVQK VLDQQQTPSRLAVTRVIQALAMKGDVENIE LAMKGDVENIEVVQKMLNGLEDSIGLSKMV R V I Q K M 2 0 1 1 0 2 2 1 0 2 1 2 1 0 0 0 0 0 0 4 0 0 19 1 2083.1347 P42704 P42704 1145 1163 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 1.0286E-06 54.103 By MS/MS By matching By matching 2 1 2 1.112 1.2607 20.956 5 Median 1.0293 1.0824 10.823 2 0 Median 1.7927 1.7043 NaN 1 0 Median 1.2061 1.3803 12.822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18051000 8965000 9085700 11384000 5792300 5591400 327120 133190 193940 6339900 3039500 3300400 0 0 0 0 0 0 0 0 0 36140 2315 37975;37976 190872;190873;190874;190875;190876 193920;193921;193922 193920 1057 3 VIQCFAETGQVQK TLALSVYLRANVPNKVIQCFAETGQVQKIV NKVIQCFAETGQVQKIVLYAKKVGYTPDWI K V I Q K I 1 0 0 0 1 3 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 0 13 0 1506.7501 A0A087WVQ6;Q00610 A0A087WVQ6 492 504 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 1.5449E-10 179.1 By MS/MS By MS/MS 4 1 1.2647 1.1408 14.073 5 Median NaN NaN NaN 0 0 Median 1.3178 1.1776 9.8193 4 0 Median 0.83412 0.91813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70352000 27805000 42548000 0 0 0 69015000 27107000 41908000 1337400 697760 639640 0 0 0 0 0 0 0 0 0 36141 44 37977 190877;190878;190879;190880;190881 193923;193924;193925;193926;193927;193928;193929;193930 193924 8 VIQEGLEGLVLK KRVTKALDLADMITRVIQEGLEGLVLKDVK ITRVIQEGLEGLVLKDVKGTYEPGKRHWLK R V I L K D 0 0 0 0 0 1 2 2 0 1 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 P49916 P49916 649 660 LIG3 DNA ligase 3 yes yes 2 0.00031777 132.01 By matching By MS/MS By matching By matching 1 3 1 1 1.0479 1.0669 14.029 6 Median 1.2287 1.238 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86673 0.93463 16.229 3 0 Median 1.2741 1.0949 NaN 1 0 Median 1.0097 1.0397 NaN 1 0 Median NaN NaN NaN 0 0 Median 39777000 20512000 19265000 1406100 824100 582030 0 0 0 36277000 18763000 17514000 254330 112020 142310 1839900 812740 1027200 0 0 0 36142 2406 37978 190882;190883;190884;190885;190886;190887 193931;193932 193932 2 VIQEGRGELPDFQDGTK ADIIARLREDGIQKRVIQEGRGELPDFQDG QEGRGELPDFQDGTKATFHYRTLHSDDEGT R V I T K A 0 1 0 2 0 2 2 3 0 1 1 1 0 1 1 0 1 0 0 1 0 0 17 1 1887.9327 O00170;E9PMH2 O00170 17 33 AIP AH receptor-interacting protein yes no 3 1.3127E-05 50.653 By MS/MS By MS/MS 1 1 0.83195 0.80474 2.3502 2 Median 0.76353 0.81823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90649 0.79148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21406000 11563000 9843100 18561000 10151000 8409400 0 0 0 0 0 0 2845100 1411400 1433700 0 0 0 0 0 0 36143 1445 37979 190888;190889 193933;193934;193935 193933 3 VIQEIVDK VPRNLVGKVIGKNGKVIQEIVDKSGVVRVR VIGKNGKVIQEIVDKSGVVRVRIEGDNENK K V I D K S 0 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 942.5386 B4DXZ6;P51114;E7EU85;E9PFF5;P51116 B4DXZ6 290 297 FXR1;FXR2 Fragile X mental retardation syndrome-related protein 1;Fragile X mental retardation syndrome-related protein 2 no no 2 0.0023353 113.5 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.2728 1.1096 18.011 10 Median 1.0904 1.0255 10.555 2 0 Median 1.2728 1.0868 3.5135 2 0 Median 1.0825 1.0805 20.418 3 0 Median 1.4544 1.2517 4.0836 2 0 Median 1.6387 1.6899 NaN 1 0 Median NaN NaN NaN 0 0 Median 77035000 35155000 41880000 15022000 7175800 7845900 29140000 12447000 16693000 26741000 13250000 13491000 3957800 1422000 2535800 2174100 859200 1314900 0 0 0 36144 608;2426 37980 190890;190891;190892;190893;190894;190895;190896;190897;190898;190899 193936;193937;193938;193939;193940;193941;193942;193943;193944;193945;193946;193947;193948;193949 193942 14 VIQEIWPVLSETLNK TNPIVENGQTHPCQKVIQEIWPVLSETLNK VIQEIWPVLSETLNKHRADNRIVERCCRCL K V I N K H 0 0 1 0 0 1 2 0 0 2 2 1 0 0 1 1 1 1 0 2 0 0 15 0 1767.9771 Q9Y5L0;E9PFH4;C9J7E5 Q9Y5L0 637 651 TNPO3 Transportin-3 yes no 2 0.00035654 57.836 By MS/MS By matching 1 1 0.85198 0.82679 9.0546 2 Median NaN NaN NaN 0 0 Median 0.86793 0.77551 NaN 1 0 Median 0.83632 0.88145 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1421500 769630 651880 0 0 0 1142600 611510 531110 278900 158130 120770 0 0 0 0 0 0 0 0 0 36145 4461 37981 190900;190901 193950;193951 193951 2 VIQENEHALQK PEIQKEHRNLLQELKVIQENEHALQKDALS QELKVIQENEHALQKDALSIKLKLEQIDGH K V I Q K D 1 0 1 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 0 1307.6834 Q9NTJ3;E9PD53 Q9NTJ3 999 1009 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 3 0.0023912 39.785 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.0223 0.96466 12.672 5 Median 1.0223 0.96466 NaN 1 0 Median 1.0092 0.89054 NaN 1 0 Median 1.0387 1.113 NaN 1 0 Median 1.06 0.96524 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91719 0.78727 NaN 1 0 Median 7378600 3539800 3838800 2038000 1013500 1024500 1869500 829680 1039800 1554300 748320 806020 1021400 516210 505170 0 0 0 895330 432080 463240 36146 4108 37982 190902;190903;190904;190905;190906 193952;193953;193954 193954 3 VIQGDGVDINTLQEIVEGMK TENSKGYKLLPPYLRVIQGDGVDINTLQEI GVDINTLQEIVEGMKQKMWSIENIAFGSGG R V I M K Q 0 0 1 2 0 2 2 3 0 3 1 1 1 0 0 0 1 0 0 3 0 0 20 0 2157.0987 P43490 P43490 350 369 NAMPT Nicotinamide phosphoribosyltransferase yes yes 2 8.5715E-19 115.78 By MS/MS 1 1.142 0.99425 NaN 1 Median NaN NaN NaN 0 0 Median 1.142 0.99425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1289500 548680 740860 0 0 0 1289500 548680 740860 0 0 0 0 0 0 0 0 0 0 0 0 36147 2326 37983 190907 193955;193956 193955 2 VIQHNALEDR IKRHKWNDFAEDSLRVIQHNALEDRSISDK EDSLRVIQHNALEDRSISDKQQWDAAIYFM R V I D R S 1 1 1 1 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1193.6153 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1 A0A2R8Y3X5 618 627 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2;3 0.00042214 74.92 By MS/MS By MS/MS 2 2 1.2411 1.1565 33.153 2 Median 0.91494 0.91485 NaN 1 0 Median 1.6836 1.4621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4748800 980390 3768400 855940 218810 637130 3892800 761570 3131300 0 0 0 0 0 0 0 0 0 0 0 0 36148 357 37984 190908;190909;190910;190911 193957;193958;193959;193960 193958 4 VIQIATSSSTAK RALTQFPLPKNLLAKVIQIATSSSTAKNLM LAKVIQIATSSSTAKNLMQFHTVGTKTKLS K V I A K N 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 3 2 0 0 1 0 0 12 0 1204.6663 H7BXY3;Q7L2E3 H7BXY3 224 235 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 3.9693E-06 105.98 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.38 1.1644 30.229 4 Median 0.91072 0.90184 NaN 1 1 Median 1.294 1.0974 NaN 1 0 Median 1.7332 1.846 NaN 1 1 Median 1.4717 1.2353 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12866000 5789400 7076500 2852800 1487100 1365700 7622000 3416000 4206000 1094700 412290 682440 1296400 474050 822360 0 0 0 0 0 0 36149 1244 37985 190912;190913;190914;190915;190916 193961;193962;193963;193964;193965;193966;193967 193963 7 VIQIVINR IRIAGDYVSEEVWYRVIQIVINRDDVQGYA SEEVWYRVIQIVINRDDVQGYAAKTVFEAL R V I N R D 0 1 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 8 0 953.6022 O94973;A0A0G2JS82;A0A0G2JQM1 O94973 464 471 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.0055194 75.311 By MS/MS By MS/MS 2 2 1.3874 1.1926 15.91 4 Median NaN NaN NaN 0 0 Median 1.5888 1.3837 23.163 2 0 Median NaN NaN NaN 0 0 Median 1.3874 1.1926 1.4612 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5468600 2159300 3309300 0 0 0 3940000 1535300 2404700 0 0 0 1528600 623970 904600 0 0 0 0 0 0 36150 1741 37986 190917;190918;190919;190920 193968;193969;193970 193968 3 VIQIVLMR PEWKSTFDAHIYEGRVIQIVLMRAAEEPVS AHIYEGRVIQIVLMRAAEEPVSEVTVGVSV R V I M R A 0 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 0 2 0 0 8 0 970.59976 Q05655;C9JZU8;C9J9P1;C9K0E3;A0A494C1T7 Q05655 68 75 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit yes no 2 0.0036575 86.086 By MS/MS By matching 1 1 0.97535 0.92181 57.035 2 Median 0.62214 0.61587 NaN 1 0 Median 1.5291 1.3797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1947800 1158900 788920 1847500 1118100 729390 100360 40837 59528 0 0 0 0 0 0 0 0 0 0 0 0 36151 2718 37987 190921;190922 193971;193972 193971 2 VIQKVEAFEHR DPIDDMGIQDQGLKKVIQKVEAFEHRMYSH GLKKVIQKVEAFEHRMYSHPLHNDPNLETV K V I H R M 1 1 0 0 0 1 2 0 1 1 0 1 0 1 0 0 0 0 0 2 0 0 11 1 1354.7357 P42285 P42285 793 803 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 0.00017981 70.1 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0845 1.1874 15.51 5 Median 1.284 1.3315 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95498 1.0845 18.498 2 0 Median NaN NaN NaN 0 0 Median 1.075 1.1874 NaN 1 0 Median 1.0845 0.95144 NaN 1 0 Median 17807000 8665900 9140700 2096700 755740 1341000 0 0 0 12027000 6170700 5856200 0 0 0 2955800 1405200 1550600 727120 334180 392930 36152 2309 37988 190923;190924;190925;190926;190927 193973;193974;193975;193976;193977 193975 5 VIQLLFK TAEQENEPTVGVIPRVIQLLFKEIDKKSDF PTVGVIPRVIQLLFKEIDKKSDFEFTLKVS R V I F K E 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 O95239;Q2VIQ3 O95239 118 124 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.025249 54.525 By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 1 2 1.1899 1.0489 19.656 8 Median 1.109 1.0537 NaN 1 0 Median 1.7318 1.5706 NaN 1 0 Median 1.3104 1.4037 NaN 1 0 Median 1.2002 1.0436 1.9563 2 0 Median 0.91446 0.95379 NaN 1 0 Median 1.1073 0.95475 12.666 2 0 Median 11515000 5106800 6408200 823830 373440 450380 52837 23681 29156 8041600 3468200 4573400 1253400 556180 697200 913210 503540 409670 430130 181720 248410 36153 1757 37989 190928;190929;190930;190931;190932;190933;190934;190935 193978;193979 193979 2 VIQPHGGGSNPLEGTQHLQDVPYVMVR DQPYANEGTVVVTERVIQPHGGGSNPLEGT EGTQHLQDVPYVMVRERESFLAPSSGVQPT R V I V R E 0 1 1 1 0 3 1 4 2 1 2 0 1 0 3 1 1 0 1 4 0 0 27 0 2927.4712 Q14126 Q14126 991 1017 DSG2 Desmoglein-2 yes yes 4 1.5833E-05 35.016 By MS/MS By MS/MS 2 2 0.45662 0.48682 22.186 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56224 0.60979 22.021 2 0 Median NaN NaN NaN 0 0 Median 0.42768 0.44557 2.6906 2 1 Median NaN NaN NaN 0 0 Median 16748000 10927000 5821700 0 0 0 0 0 0 6078700 3745300 2333400 0 0 0 10670000 7181500 3488300 0 0 0 36154 2855 37990 190936;190937;190938;190939 193980;193981;193982 193980 3 VIQQESYTYK KDVRKRRQVLKDLVKVIQQESYTYKDPITE KDLVKVIQQESYTYKDPITEFVECLYVNFD K V I Y K D 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 1 1 0 2 1 0 0 10 0 1257.6241 P60228;E5RGA2;E5RHS5 P60228 280 289 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0034408 56.729 By MS/MS 1 1.2647 1.0855 NaN 1 Median NaN NaN NaN 0 0 Median 1.2647 1.0855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1573500 674350 899150 0 0 0 1573500 674350 899150 0 0 0 0 0 0 0 0 0 0 0 0 36155 2524 37991 190940 193983 193983 1 VIQQLEGAFALVFK NRESQDTSFTTLVERVIQQLEGAFALVFKS RVIQQLEGAFALVFKSVHFPGQAVGTRRGS R V I F K S 2 0 0 0 0 2 1 1 0 1 2 1 0 2 0 0 0 0 0 2 0 0 14 0 1561.8868 Q06210;O94808;E5RJP4 Q06210 177 190 GFPT1;GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 yes no 2 1.9364E-06 96.847 By matching By MS/MS 1 2 1.1927 1.0232 34.109 3 Median 1.2706 1.2699 NaN 1 0 Median 0.9424 0.81603 31.988 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10702000 5391900 5310100 1495700 744300 751380 9206300 4647600 4558700 0 0 0 0 0 0 0 0 0 0 0 0 36156 2723 37992 190941;190942;190943 193984;193985 193984 2 VIQQSLEQEEAEHK KEKSNMEIDMTYQLKVIQQSLEQEEAEHKA KVIQQSLEQEEAEHKATKARLADKNKIYES K V I H K A 1 0 0 0 0 3 4 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 14 0 1666.8162 O75116;E9PF63;Q14DU5 O75116 696 709 ROCK2 Rho-associated protein kinase 2 yes no 2;3 3.537E-06 88.075 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1045 1.0306 9.0767 6 Median 1.0264 0.98479 2.0407 2 0 Median 1.3099 1.1517 1.5176 2 1 Median 0.86696 0.92676 NaN 1 0 Median 1.1793 1.063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41299000 19697000 21601000 16000000 7789900 8209800 10742000 4902800 5839200 9550400 4689000 4861400 5006400 2315400 2691100 0 0 0 0 0 0 36157 1644 37993 190944;190945;190946;190947;190948;190949;190950 193986;193987;193988;193989;193990;193991;193992;193993;193994 193986 9 VIQSVANYAK GTERLFTNLKDTSSKVIQSVANYAKGDLDI DTSSKVIQSVANYAKGDLDISYITSRIAVM K V I A K G 2 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 2 0 0 10 0 1091.5975 O14976 O14976 396 405 GAK Cyclin-G-associated kinase yes yes 2 0.0026267 73.248 By MS/MS 1 1.5403 1.347 NaN 1 Median NaN NaN NaN 0 0 Median 1.5403 1.347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5936600 2579900 3356800 0 0 0 5936600 2579900 3356800 0 0 0 0 0 0 0 0 0 0 0 0 36158 1509 37994 190951 193995 193995 1 VIQVAAGSSNLK DVDKVAFTGSTEIGRVIQVAAGSSNLKRVT IGRVIQVAAGSSNLKRVTLELGGKSPNIIM R V I L K R 2 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 0 0 2 0 0 12 0 1185.6717 P05091 P05091 269 280 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2 5.1455E-06 100.48 By MS/MS By MS/MS 1 1 1.4471 1.3093 28.416 2 Median 1.1113 1.071 NaN 1 0 Median 1.8844 1.6007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9307100 3368300 5938800 2374300 1090400 1283900 6932800 2277900 4654900 0 0 0 0 0 0 0 0 0 0 0 0 36159 1860 37995 190952;190953 193996;193997;193998;193999 193999 4 VIQVAAGSSNLKR DVDKVAFTGSTEIGRVIQVAAGSSNLKRVT GRVIQVAAGSSNLKRVTLELGGKSPNIIMS R V I K R V 2 1 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 0 0 2 0 0 13 1 1341.7728 P05091 P05091 269 281 ALDH2 Aldehyde dehydrogenase, mitochondrial yes yes 2;3 2.1263E-06 115.78 By MS/MS By MS/MS 2 2 1.3244 1.2658 34.371 4 Median 0.93684 0.93542 4.8206 2 1 Median 1.8523 1.6918 3.0769 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20039000 8828800 11211000 12496000 6378700 6117800 7543000 2450100 5092800 0 0 0 0 0 0 0 0 0 0 0 0 36160 1860 37996 190954;190955;190956;190957 194000;194001;194002;194003;194004;194005 194001 6 VIQVSPFLLALSGNSR LTLLGSYKGKKCAFRVIQVSPFLLALSGNS IQVSPFLLALSGNSRELVLD__________ R V I S R E 1 1 1 0 0 1 0 1 0 1 3 0 0 1 1 3 0 0 0 2 0 0 16 0 1699.9621 O95059 O95059 104 119 RPP14 Ribonuclease P protein subunit p14 yes yes 2 0.00028884 48.741 By matching By matching By MS/MS 1 1 1 0.90156 0.89731 2.084 3 Median 0.90156 0.87013 NaN 1 0 Median 1.0742 0.90541 NaN 1 0 Median 0.88643 0.89731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3798400 1903500 1894900 370720 178560 192150 451540 218520 233020 2976100 1506400 1469700 0 0 0 0 0 0 0 0 0 36161 1742 37997 190958;190959;190960 194006;194007 194007 2 VIQYLAHVASSHK CTGESGAGKTENTKKVIQYLAHVASSHKGR KKVIQYLAHVASSHKGRKDHNIPGELERQL K V I H K G 2 0 0 0 0 1 0 0 2 1 1 1 0 0 0 2 0 0 1 2 0 0 13 0 1451.7885 P35580 P35580 191 203 MYH10 Myosin-10 yes yes 2;3 8.3164E-07 101.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 1 3 3 1.0827 1.1155 26.355 15 Median 1.0788 1.0284 0.084169 2 0 Median 1.3405 1.1698 32.445 4 1 Median 0.71733 0.79374 18.897 2 0 Median 1.5409 1.3912 NaN 1 0 Median 0.86789 0.90872 14.689 3 0 Median 1.4041 1.2025 23.622 3 0 Median 301310000 144450000 156860000 140640000 66605000 74038000 61458000 26073000 35386000 35510000 20479000 15031000 3576100 1308600 2267500 46664000 24777000 21887000 13458000 5212500 8245800 36162 2245 37998 190961;190962;190963;190964;190965;190966;190967;190968;190969;190970;190971;190972;190973;190974;190975;190976 194008;194009;194010;194011;194012;194013;194014;194015;194016;194017;194018;194019;194020;194021;194022;194023;194024;194025 194015 18 VIQYLAHVASSPK CTGESGAGKTENTKKVIQYLAHVASSPKGR KKVIQYLAHVASSPKGRKEPGVPGELERQL K V I P K G 2 0 0 0 0 1 0 0 1 1 1 1 0 0 1 2 0 0 1 2 0 0 13 0 1411.7823 Q7Z406 Q7Z406 211 223 MYH14 Myosin-14 no no 2;3 6.6201E-07 104.79 By MS/MS By MS/MS 2 2 0.88853 0.81524 11.719 4 Median 0.86281 0.8343 14.858 2 0 Median 0.90657 0.80509 13.363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29055000 14751000 14304000 22403000 11319000 11084000 6651600 3431800 3219800 0 0 0 0 0 0 0 0 0 0 0 0 36163 3242 37999 190977;190978;190979;190980 194026;194027;194028;194029;194030;194031;194032;194033 194026 8 VIQYLAYVASSHK CTGESGAGKTENTKKVIQYLAYVASSHKSK KKVIQYLAYVASSHKSKKDQGELERQLLQA K V I H K S 2 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 2 2 0 0 13 0 1477.7929 P35579;Q5BKV1 P35579 187 199 MYH9 Myosin-9 yes no 2;3 1.0211E-06 140.3 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 5 3 2 1 3 2 1.2717 1.1371 21.728 16 Median 1.3339 1.267 21.356 5 0 Median 1.18 1.0441 5.2016 3 0 Median 0.97864 1.0833 4.5201 2 1 Median 1.2847 1.1661 NaN 1 0 Median 1.368 1.4327 30.532 3 0 Median 1.2034 1.033 10.034 2 0 Median 369870000 163320000 206540000 250000000 108110000 141890000 61765000 27629000 34137000 25442000 12886000 12557000 663750 290950 372800 30217000 13591000 16627000 1775900 817770 958150 36164 2244 38000 190981;190982;190983;190984;190985;190986;190987;190988;190989;190990;190991;190992;190993;190994;190995;190996 194034;194035;194036;194037;194038;194039;194040;194041;194042;194043;194044;194045;194046;194047;194048;194049;194050;194051;194052 194037 19 VIRPLDQPSSFDATPYIK KITSEALLVTQQLVKVIRPLDQPSSFDATP PLDQPSSFDATPYIKDLFTCTIKRLKAADI K V I I K D 1 1 0 2 0 1 0 0 0 2 1 1 0 1 3 2 1 0 1 1 0 0 18 1 2046.0786 Q86VP6 Q86VP6 549 566 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2;3 3.9324E-13 119.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 2 1 2 0.69385 0.72301 19.147 13 Median 0.59764 0.624 19.919 3 0 Median 0.79198 0.75458 6.0547 2 1 Median 0.61843 0.7018 6.2664 3 1 Median 0.81837 0.78646 1.8423 2 1 Median 1.0218 1.1236 NaN 1 1 Median 0.74897 0.66096 14.392 2 0 Median 144450000 85604000 58850000 61983000 37272000 24711000 6263500 3177400 3086100 66775000 40313000 26461000 3080600 1764000 1316600 5429400 2601500 2828000 922610 475250 447360 36165 3288 38001 190997;190998;190999;191000;191001;191002;191003;191004;191005;191006;191007;191008;191009 194053;194054;194055;194056;194057;194058;194059;194060;194061;194062;194063;194064;194065;194066 194056 14 VISDKDLELLLDR KSRDYEREIKGSREKVISDKDLELLLDRSD EKVISDKDLELLLDRSDLIDQMNASGPIKE K V I D R S 0 1 0 3 0 0 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 13 1 1527.8508 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7;Q9NW36 F6XU50 667 679 HELLS Lymphoid-specific helicase yes no 2;3 0.013216 39.661 By MS/MS 2 0.88088 1.0036 9.1045 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88088 1.0036 9.1045 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2836800 1480500 1356300 0 0 0 0 0 0 2836800 1480500 1356300 0 0 0 0 0 0 0 0 0 36166 211 38002 191010;191011 194067;194068 194068 2 VISELNGK LDSVGIEADDDRLNKVISELNGKNIEDVIA DDDRLNKVISELNGKNIEDVIAQGIGKLAS K V I G K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 P05387 P05387 42 49 RPLP2 60S acidic ribosomal protein P2 yes yes 2 0.0022898 135.87 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.0596 0.87385 15.867 5 Median 1.0499 0.94241 0.26742 2 0 Median 1.0596 0.8717 NaN 1 0 Median 0.66944 0.64279 NaN 1 1 Median 1.0797 0.87385 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52528000 26856000 25672000 25533000 12177000 13356000 16070000 8022800 8047200 7803600 5161300 2642300 3121500 1494600 1626900 0 0 0 0 0 0 36167 1864 38003 191012;191013;191014;191015;191016;191017 194069;194070;194071;194072;194073;194074;194075;194076 194070 8 VISESPPDQWEAR EKLYRPPPVLDALGRVISESPPDQWEARCG GRVISESPPDQWEARCGLALALNKLSQYLD R V I A R C 1 1 0 1 0 1 2 0 0 1 0 0 0 0 2 2 0 1 0 1 0 0 13 0 1512.7209 Q92616 Q92616 1222 1234 GCN1L1 Translational activator GCN1 yes yes 2 2.3822E-06 120.09 By MS/MS By MS/MS By matching By matching 1 3 2 1 0.8716 0.818 38.853 7 Median 0.8716 0.818 NaN 1 0 Median 0.72716 0.58917 24.082 3 2 Median 1.101 1.1679 1.1899 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38987 0.41253 NaN 1 0 Median 59040000 31866000 27174000 17295000 9707400 7588100 27612000 15247000 12365000 13408000 6479700 6928000 0 0 0 0 0 0 724840 432410 292430 36168 3544 38004 191018;191019;191020;191021;191022;191023;191024 194077;194078;194079;194080;194081 194077 5 VISFEEQVASIR AKEIYHFTLEKIQPRVISFEEQVASIRQHL QPRVISFEEQVASIRQHLASIYEKEEDWRN R V I I R Q 1 1 0 0 0 1 2 0 0 2 0 0 0 1 0 2 0 0 0 2 0 0 12 0 1376.73 D6RAX7;Q9BT78;D6RFN0 D6RAX7 96 107 COPS4 COP9 signalosome complex subunit 4 yes no 2 3.5722E-06 131.28 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.2386 1.1079 24.008 7 Median 1.1087 1.1079 NaN 1 0 Median 1.2386 1.0809 NaN 1 0 Median 1.1059 1.1642 22.909 2 0 Median 1.1734 1.0418 NaN 1 0 Median 1.8739 1.9823 NaN 1 0 Median 1.4924 1.3156 NaN 1 0 Median 53012000 23915000 29096000 19936000 9565100 10371000 9163000 4016000 5147000 21107000 9124500 11983000 1401600 643930 757690 1095500 448210 647310 308160 117700 190460 36169 813 38005 191025;191026;191027;191028;191029;191030;191031 194082;194083;194084;194085;194086 194085 5 VISFIENTSTPVDR MTVALKTKSVNVREKVISFIENTSTPVDRM KVISFIENTSTPVDRMSFNLPWPDRSCTER K V I D R M 0 1 1 1 0 0 1 0 0 2 0 0 0 1 1 2 2 0 0 2 0 0 14 0 1576.8097 E9PGE5;Q9NUY8 E9PGE5 368 381 TBC1D23 TBC1 domain family member 23 yes no 2 0.00011155 84.17 By MS/MS 1 0.97878 0.93856 NaN 1 Median 0.97878 0.93856 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4770900 2388100 2382800 4770900 2388100 2382800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36170 924 38006 191032 194087 194087 1 VISGHLGWVR TMPKPQWHPPWKLYRVISGHLGWVRCIAVE WKLYRVISGHLGWVRCIAVEPGNQWFVTGS R V I V R C 0 1 0 0 0 0 0 2 1 1 1 0 0 0 0 1 0 1 0 2 0 0 10 0 1122.6298 O43660;D6RA26 O43660 199 208 PLRG1 Pleiotropic regulator 1 yes no 2 0.00038123 80.165 By MS/MS By MS/MS By matching 1 2 1 1.2218 1.158 28.302 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0974 1.1187 NaN 1 0 Median 1.3959 1.2135 1.7477 2 0 Median NaN NaN NaN 0 0 Median 0.78341 0.67431 NaN 1 0 Median 12761000 5858500 6902700 0 0 0 0 0 0 6866500 3153700 3712800 3869500 1595900 2273600 0 0 0 2025200 1109000 916220 36171 1580 38007 191033;191034;191035;191036 194088;194089;194090 194088 3 VISGHQEALR NPVCEVSNYLFPDCRVISGHQEALRFLQKN FPDCRVISGHQEALRFLQKNSSKFHFRRTR R V I L R F 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1108.5989 Q8IVS2 Q8IVS2 237 246 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.065949 41.029 By MS/MS 1 2.8215 2.4464 NaN 1 Median NaN NaN NaN 0 0 Median 2.8215 2.4464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 846920 244380 602540 0 0 0 846920 244380 602540 0 0 0 0 0 0 0 0 0 0 0 0 36172 3319 38008 191037 194091 194091 1 VISGQFLSDR EVIVDGIVANALRVKVISGQFLSDRKVGIY ALRVKVISGQFLSDRKVGIYVEVDMFGLPV K V I D R K 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1120.5877 Q01970 Q01970 732 741 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.00036244 87.308 By matching By matching By MS/MS 1 1 1 1.4876 1.377 14.089 3 Median 1.4876 1.4657 NaN 1 0 Median 1.6068 1.377 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3176 1.1198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8207500 3605900 4601600 2231800 1092100 1139600 2050400 743020 1307300 0 0 0 3925300 1770700 2154600 0 0 0 0 0 0 36173 2695 38009 191038;191039;191040 194092;194093 194092 2 VISGVLQLGNIVFK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK RVISGVLQLGNIVFKKERNTDQASMPDNTA R V I F K K 0 0 1 0 0 1 0 2 0 2 2 1 0 1 0 1 0 0 0 3 0 0 14 0 1485.8919 P35579 P35579 342 355 MYH9 Myosin-9 yes yes 2;3 6.7676E-08 145.89 By MS/MS By MS/MS By matching By matching By matching By matching 6 6 1 1 2 2 1.1889 1.1394 16.073 18 Median 1.364 1.3421 7.4701 6 0 Median 1.0825 0.95317 6.3992 6 0 Median 1.0587 1.1744 NaN 1 0 Median 1.1683 1.0518 NaN 1 0 Median 1.1201 1.1251 28.292 2 0 Median 1.3398 1.1446 14.437 2 0 Median 287240000 132450000 154800000 21506000 9342600 12164000 263370000 121960000 141410000 1169300 590680 578640 175940 83439 92496 579300 297390 281900 444290 179810 264490 36174 2244 38010 191041;191042;191043;191044;191045;191046;191047;191048;191049;191050;191051;191052;191053;191054;191055;191056;191057;191058 194094;194095;194096;194097;194098;194099;194100;194101;194102;194103 194102 9 VISGVLQLGNIVFKK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK VISGVLQLGNIVFKKERNTDQASMPDNTAA R V I K K E 0 0 1 0 0 1 0 2 0 2 2 2 0 1 0 1 0 0 0 3 0 0 15 1 1613.9869 P35579 P35579 342 356 MYH9 Myosin-9 yes yes 2;3 6.8698E-06 86.624 By MS/MS By matching By MS/MS By matching By matching 4 5 2 2 2 1.1563 1.1185 15.571 15 Median 1.3647 1.2909 19.679 4 0 Median 1.1563 1.11 17.357 5 0 Median 1.032 1.19 10.32 2 0 Median NaN NaN NaN 0 0 Median 1.1141 1.2031 0.49268 2 0 Median 1.1507 1.0256 11.717 2 0 Median 76389000 33419000 42970000 51835000 21887000 29948000 13446000 6182300 7263800 8347200 4039900 4307300 0 0 0 1419500 726460 693020 1341300 583080 758220 36175 2244 38011 191059;191060;191061;191062;191063;191064;191065;191066;191067;191068;191069;191070;191071;191072;191073 194104;194105;194106;194107;194108;194109;194110 194104 7 VISHYAGQDATDPFVAFHINK YNISEFTRRHPGGSRVISHYAGQDATDPFV GQDATDPFVAFHINKGLVKKYMNSLLIGEL R V I N K G 3 0 1 2 0 1 0 1 2 2 0 1 0 2 1 1 1 0 1 2 0 0 21 0 2329.1491 O60427;H7C2V0;A0A0A0MR51 O60427 58 78 FADS1 Fatty acid desaturase 1 yes no 3;4 7.1453E-05 45.069 By MS/MS By matching By matching 2 1 1 0.83633 0.83918 9.9465 4 Median 0.83633 0.83918 7.8099 2 1 Median 1.1109 0.97212 NaN 1 0 Median 0.70721 0.78911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57488000 32076000 25413000 49284000 28482000 20802000 6191500 2548800 3642700 2013000 1045000 967940 0 0 0 0 0 0 0 0 0 36176 1614 38012 191074;191075;191076;191077 194111;194112;194113 194111 3 VISSIEQKTDTSDK VAYKNVVGGRRSAWRVISSIEQKTDTSDKK RVISSIEQKTDTSDKKLQLIKDYREKVESE R V I D K K 0 0 0 2 0 1 1 0 0 2 0 2 0 0 0 3 2 0 0 1 0 0 14 1 1549.7835 P27348;E9PG15 P27348 61 74 YWHAQ 14-3-3 protein theta yes no 3 0.068596 11.692 By matching By MS/MS 1 1 1.0562 1.0105 25.04 2 Median 0.83154 0.84649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3415 1.2062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2093100 1044300 1048800 1443700 755140 688520 0 0 0 0 0 0 649440 289120 360320 0 0 0 0 0 0 36177 2152 38013 191078;191079 194114 194114 1 VISSIEQKTER VAYKNVVGARRSSWRVISSIEQKTERNEKK SSWRVISSIEQKTERNEKKQQMGKEYREKI R V I E R N 0 1 0 0 0 1 2 0 0 2 0 1 0 0 0 2 1 0 0 1 0 0 11 1 1288.6987 P31946;Q4VY20;Q4VY19;A0A0J9YWE8;A0A0J9YWZ2 P31946 63 73 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes no 3 0.00020569 65.5 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2266 1.212 39.795 4 Median 1.0406 1.0951 NaN 1 0 Median 2.6275 2.443 NaN 1 1 Median 1.3125 1.3413 NaN 1 0 Median 1.1462 1.0146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8846900 3146700 5700100 2935100 1547600 1387500 3989700 801390 3188300 780630 301390 479250 1141400 496420 645020 0 0 0 0 0 0 36178 2210 38014 191080;191081;191082;191083 194115;194116;194117;194118;194119 194115 5 VISSVSYYTHR SSFNGKMNALNEVNKVISSVSYYTHRHGNP EVNKVISSVSYYTHRHGNPEEEEWLTAERM K V I H R H 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 3 1 0 2 2 0 0 11 0 1310.6619 Q93008;O00507 Q93008 361 371 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 3 5.0387E-05 103.34 By MS/MS By MS/MS By matching 2 2 1 1.2357 1.1492 28.563 5 Median 1.1326 1.0968 7.9251 2 1 Median 1.2806 1.0538 12.26 2 1 Median 1.7921 1.9903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76666000 33270000 43396000 16140000 7021300 9118600 57546000 25299000 32248000 2980000 949840 2030100 0 0 0 0 0 0 0 0 0 36179 3573 38015 191084;191085;191086;191087;191088 194120;194121;194122;194123;194124;194125 194120 6 VISTMSVGIDHLALDEIK HVDKRILDAAGANLKVISTMSVGIDHLALD TMSVGIDHLALDEIKKRGIRVGYTPDVLTD K V I I K K 1 0 0 2 0 0 1 1 1 3 2 1 1 0 0 2 1 0 0 2 0 0 18 0 1940.0289 Q9UBQ7;U3KQ56 Q9UBQ7 77 94 GRHPR Glyoxylate reductase/hydroxypyruvate reductase yes no 3 0.021616 16.123 By matching By MS/MS 1 1 1.4321 1.3036 12.921 2 Median 1.4464 1.4283 NaN 1 0 Median 1.4179 1.1898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6482400 2869000 3613500 1119600 564090 555550 5362800 2304900 3057900 0 0 0 0 0 0 0 0 0 0 0 0 36180 4243 38016 191089;191090 194126 194126 1 VISTTDAER DLPNRQLKVQVADRRVISTTDAERQAVTPP QVADRRVISTTDAERQAVTPPGLQEAINDL R V I E R Q 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 2 0 0 1 0 0 9 0 990.49819 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27;H0Y8I3 H0Y987 461 469 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.0027536 69.825 By MS/MS By MS/MS 1 1 0.79226 0.73184 38.367 2 Median 0.56614 0.55795 NaN 1 1 Median 1.1087 0.95993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8602800 4493900 4108900 3624000 2276200 1347800 4978800 2217700 2761100 0 0 0 0 0 0 0 0 0 0 0 0 36181 1165 38017 191091;191092 194127;194128;194129 194129 3 VISVSTSER AYAIRAANNGSAMVRVISVSTSERTLLKGF GSAMVRVISVSTSERTLLKGFTGSVADLAF R V I E R T 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 3 1 0 0 2 0 0 9 0 976.51892 Q6P2E9 Q6P2E9 161 169 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.038513 34.089 By matching By matching By MS/MS 1 2 1 1.2135 1.1656 45.537 4 Linear 0.33812 0.34499 NaN 1 0 Median 0.86904 0.85291 18.953 2 0 Median 0.72748 0.79462 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8249600 4360100 3889500 556730 372890 183840 5646500 2816700 2829800 2046300 1170500 875800 0 0 0 0 0 0 0 0 0 36182 3155 38018 191093;191094;191095;191096 194130 194130 1 VITALVER REAGNINQSLLTLGRVITALVERTPHVPYR SLLTLGRVITALVERTPHVPYRESKLTRIL R V I E R T 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 899.54402 P52732 P52732 298 305 KIF11 Kinesin-like protein KIF11 yes yes 2 0.0038087 85.212 By MS/MS By MS/MS By matching 1 1 1 1.0241 0.86062 4.4345 3 Median 0.84186 0.81579 NaN 1 0 Median 1.0241 0.86062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0923 0.89084 NaN 1 0 Median 11194000 5564200 5630200 3632200 1745900 1886200 6629900 3320400 3309400 0 0 0 0 0 0 0 0 0 932320 497790 434530 36183 2454 38019 191097;191098;191099 194131;194132;194133 194131 3 VITDENWR LWGAPWTHGRRSNVRVITDENWRELLEGDW GRRSNVRVITDENWRELLEGDWMIEFYAPW R V I W R E 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 8 0 1031.5036 Q9H3N1;G3V448 Q9H3N1 33 40 TMX1 Thioredoxin-related transmembrane protein 1 yes no 2 0.0024054 117.93 By MS/MS By MS/MS 2 2 1.1789 1.0464 31.653 4 Median 1.492 1.4016 41.56 2 0 Median 1.1789 0.98947 8.1335 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33241000 14164000 19077000 23207000 9662000 13545000 10034000 4501900 5532200 0 0 0 0 0 0 0 0 0 0 0 0 36184 3956 38020 191100;191101;191102;191103 194134;194135;194136;194137;194138 194134 5 VITDIAGVIPAEK QSATRLTGGKEITEKVITDIAGVIPAEKID EKVITDIAGVIPAEKIDGVFAACQSGSFDK K V I E K I 2 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P35249;H7C1P0 P35249 261 273 RFC4 Replication factor C subunit 4 yes no 2 3.8285E-05 90.827 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1.0573 0.92181 8.6398 7 Median 0.99559 0.95082 15.164 2 0 Median NaN NaN NaN 0 0 Median 0.92448 0.93536 3.5195 2 0 Median NaN NaN NaN 0 0 Median 1.087 1.0793 NaN 1 0 Median 1.0824 0.91094 1.6775 2 0 Median 44062000 21449000 22613000 14447000 6851100 7595900 0 0 0 24259000 12200000 12059000 0 0 0 3716300 1624400 2091800 1639700 773210 866500 36185 2237 38021 191104;191105;191106;191107;191108;191109;191110 194139;194140;194141;194142;194143;194144;194145;194146;194147 194140 8 VITDVYYVDGTEVER RHMRTIREVRTLVTRVITDVYYVDGTEVER VITDVYYVDGTEVERKVTEETEEPIVECQE R V I E R K 0 1 0 2 0 0 2 1 0 1 0 0 0 0 0 0 2 0 2 4 0 0 15 0 1756.8519 A6NNK5;Q12888;M0R142 A6NNK5 1258 1272 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 4.4954E-09 151.1 By matching By MS/MS By MS/MS By matching 1 4 4 1 1.0928 1.0552 22.384 10 Median 0.90915 0.91373 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7757 0.85031 12.139 4 0 Median 1.4219 1.2297 10.707 4 0 Median 1.424 1.4925 NaN 1 0 Median NaN NaN NaN 0 0 Median 66126000 34353000 31773000 4265700 2138600 2127000 0 0 0 52654000 28350000 24303000 4907500 2065900 2841600 4299700 1798300 2501400 0 0 0 36186 530 38022 191111;191112;191113;191114;191115;191116;191117;191118;191119;191120 194148;194149;194150;194151;194152;194153;194154;194155;194156;194157 194148 9 VITEEEKNFK PVMPVRNVYKKEKARVITEEEKNFKAFASL KEKARVITEEEKNFKAFASLRMARANARLF R V I F K A 0 0 1 0 0 0 3 0 0 1 0 2 0 1 0 0 1 0 0 1 0 0 10 1 1235.6398 P26373;J3KS98;H3BUK8 P26373 168 177 RPL13 60S ribosomal protein L13 yes no 2;3 2.5967E-05 133.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 3 1 1.0658 1.0542 27.506 15 Median 1.0428 1.0367 6.6409 4 0 Median 1.1235 1.0256 24.934 3 0 Median 1.0289 1.0251 4.9651 2 0 Median 0.84933 0.73815 41.573 2 0 Median 1.0548 1.1295 1.8781 3 0 Plateau 2.4363 2.073 NaN 1 1 Median 158640000 75917000 82727000 66665000 32489000 34176000 25005000 11416000 13590000 19821000 9708700 10112000 4395300 1956100 2439200 40295000 19708000 20586000 2462700 638920 1823800 36187 2144 38023 191121;191122;191123;191124;191125;191126;191127;191128;191129;191130;191131;191132;191133;191134;191135 194158;194159;194160;194161;194162;194163;194164;194165;194166;194167;194168;194169;194170;194171;194172;194173;194174;194175;194176;194177;194178;194179 194174 22 VITEYLNAQESAK GLVMVEVRKEKQFQKVITEYLNAQESAKSA QKVITEYLNAQESAKSARLNLWRYGDFRAD K V I A K S 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1464.746 Q7KZF4 Q7KZF4 874 886 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 1.6766E-22 201.33 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.101 1.1327 10.294 5 Median 1.1088 1.0439 11.55 2 0 Median 1.0805 0.96303 NaN 1 0 Median 1.101 1.1874 NaN 1 0 Median 1.3058 1.1565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135280000 64689000 70596000 81126000 40522000 40604000 1300200 684210 615990 31971000 14382000 17589000 20887000 9100500 11786000 0 0 0 0 0 0 36188 3214 38024 191136;191137;191138;191139;191140 194180;194181;194182;194183;194184;194185;194186 194186 7 VITFIDLAGHEK GGSLEWTKICEKSTKVITFIDLAGHEKYLK STKVITFIDLAGHEKYLKTTVFGMTGHLPD K V I E K Y 1 0 0 1 0 0 1 1 1 2 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1341.7293 O00178 O00178 247 258 GTPBP1 GTP-binding protein 1 yes yes 3 0.04478 27.862 By MS/MS 1 1.4107 1.3713 NaN 1 Median 1.4107 1.3713 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2953000 1373500 1579500 2953000 1373500 1579500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36189 1446 38025 191141 194187 194187 1 VITIMQNPR LTKRAGELTEDEVERVITIMQNPRQYKIPD EDEVERVITIMQNPRQYKIPDWFLNRQKDV R V I P R Q 0 1 1 0 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 9 0 1070.5906 P62269 P62269 67 75 RPS18 40S ribosomal protein S18 yes yes 2 3.1443E-05 154.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 3 6 5 1.0845 1.0053 20.815 26 Median 0.82416 0.77116 20.454 4 0 Median 1.1683 0.97035 32.691 5 1 Median 1.0242 1.032 6.0534 3 0 Plateau 1.5487 1.2213 19.906 3 0 Median 1.0431 1.082 11.957 6 0 Median 1.3246 1.032 6.4398 5 0 Median 1008700000 495200000 513530000 483070000 248080000 234990000 416210000 194780000 221430000 46359000 22676000 23683000 6299700 2771300 3528400 25947000 13240000 12707000 30843000 13654000 17189000 36190 2578 38026;38027 191142;191143;191144;191145;191146;191147;191148;191149;191150;191151;191152;191153;191154;191155;191156;191157;191158;191159;191160;191161;191162;191163;191164;191165;191166;191167 194188;194189;194190;194191;194192;194193;194194;194195;194196;194197;194198;194199;194200;194201;194202;194203;194204;194205;194206;194207;194208;194209;194210;194211;194212;194213;194214;194215;194216;194217;194218;194219;194220;194221;194222;194223;194224;194225 194199 1249 38 VITLCLYR HRLALHKPPLHHQSKVITLCLYRDLSGMFT PLHHQSKVITLCLYRDLSGMFTTESRLGGA K V I Y R D 0 1 0 0 1 0 0 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 8 0 1036.5739 Q10570 Q10570 695 702 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0022898 110.63 By matching By MS/MS 1 1 1.2725 1.2112 6.8161 2 Median NaN NaN NaN 0 0 Median 1.4953 1.271 NaN 1 0 Median 1.0828 1.1542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7751000 3554700 4196300 0 0 0 1236300 528490 707850 6514700 3026200 3488500 0 0 0 0 0 0 0 0 0 36191 2753 38028 191168;191169 194226;194227 194226 2 VITLWYRPPELLLGEER ARLYNSEESRPYTNKVITLWYRPPELLLGE TLWYRPPELLLGEERYTPAIDVWSCGCILG K V I E R Y 0 2 0 0 0 0 3 1 0 1 4 0 0 0 2 0 1 1 1 1 0 0 17 1 2083.1466 Q9NYV4;J3QSD7;A0A2R8YEB7;Q9BVE2;A0A2R8Y4Z0;A0A2R8Y7W5;A0A2R8YF61;A0A2R8YD28;A0A087X209;Q14004;A0A2R8Y644 Q9NYV4 896 912 CDK12;CDK13 Cyclin-dependent kinase 12;Cyclin-dependent kinase 13 yes no 3 0.026623 16.685 By MS/MS By matching 1 1 0.92072 0.95681 13.764 2 Median 0.81173 0.86807 NaN 1 0 Median 1.0443 1.0546 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2487800 1224400 1263400 967110 479020 488090 1520700 745410 775290 0 0 0 0 0 0 0 0 0 0 0 0 36192 4180 38029 191170;191171 194228 194228 1 VITMFVQR NSIPGIESPFEQAKKVITMFVQRQVFAENK PFEQAKKVITMFVQRQVFAENKDEIALVLF K V I Q R Q 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 8 0 992.54772 P13010;C9JZ81;H7C0H9 P13010 37 44 XRCC5 X-ray repair cross-complementing protein 5 yes no 2 0.00070426 151.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 4 5 5 1 2 1.286 1.1761 10.931 22 Median 1.1821 1.1186 8.833 5 0 Median 1.4363 1.2404 8.3404 4 0 Median 1.0159 1.0454 6.9891 5 0 Median 1.4107 1.1999 14.29 5 0 Median 1.1736 1.213 NaN 1 0 Median 1.3455 1.1296 13.52 2 0 Median 368020000 170420000 197600000 93747000 41120000 52627000 41209000 16636000 24573000 172670000 87370000 85301000 52070000 21566000 30503000 6820400 3153900 3666500 1506600 577460 929110 36193 1986 38030;38031 191172;191173;191174;191175;191176;191177;191178;191179;191180;191181;191182;191183;191184;191185;191186;191187;191188;191189;191190;191191;191192;191193 194229;194230;194231;194232;194233;194234;194235;194236;194237;194238;194239;194240;194241;194242;194243;194244;194245;194246;194247;194248;194249 194237 770 21 VITNFNSAHDTDR GTLNTALRSLGIPSRVITNFNSAHDTDRNL SRVITNFNSAHDTDRNLSVDVYYDPMGNPL R V I D R N 1 1 2 2 0 0 0 0 1 1 0 0 0 1 0 1 2 0 0 1 0 0 13 0 1488.6957 A0A494C0J7;Q08188 A0A494C0J7 312 324 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 3 0.0031021 49.929 By MS/MS By MS/MS By MS/MS 4 1 1 0.23717 0.24539 36.618 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.14869 0.1294 NaN 1 1 Median 0.23785 0.24884 NaN 1 1 Median 0.16163 0.13487 NaN 1 1 Median 6660300 6052300 608010 0 0 0 0 0 0 0 0 0 3372000 3292000 80043 1889000 1583900 305120 1399300 1176400 222840 36194 459 38032 191194;191195;191196;191197;191198;191199 194250;194251;194252;194253;194254;194255 194251 6 VITNQYNNPAGLYSSENISNFNNALESK AMPFTASPASSTTARVITNQYNNPAGLYSS SSENISNFNNALESKTAASGVEANSRPLDH R V I S K T 2 0 7 0 0 1 2 1 0 2 2 1 0 1 1 4 1 0 2 1 0 0 28 0 3100.4738 O00151 O00151 139 166 PDLIM1 PDZ and LIM domain protein 1 yes yes 2;3 1.7412E-14 60.139 By MS/MS By matching By MS/MS 3 3 1 0.77431 0.73775 12.774 7 Median 0.80143 0.7337 4.3342 3 0 Plateau 0.94223 0.82126 17.995 3 0 Median 0.77431 0.74088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88437000 43028000 45409000 83847000 40408000 43439000 744900 421220 323680 3845300 2199100 1646100 0 0 0 0 0 0 0 0 0 36195 1442 38033 191200;191201;191202;191203;191204;191205;191206 194256;194257;194258;194259;194260;194261;194262;194263 194258 8 VITPEDLLFLMR LLQQAAEVSQLRGARVITPEDLLFLMRKDK GARVITPEDLLFLMRKDKKKLRRLLKYMFI R V I M R K 0 1 0 1 0 0 1 0 0 1 3 0 1 1 1 0 1 0 0 1 0 0 12 0 1445.7952 O75486 O75486 77 88 SUPT3H Transcription initiation protein SPT3 homolog yes yes 2 0.029939 28.399 By MS/MS By matching 1 1 0.9959 0.905 4.737 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89034 0.87519 NaN 1 0 Median 1.114 0.93582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2774000 1425600 1348500 0 0 0 0 0 0 2714900 1406800 1308200 59104 18797 40307 0 0 0 0 0 0 36196 1676 38034 191207;191208 194264 194264 1 VIVAVGDR LHPIQTSFQEATASKVIVAVGDRSSNLRGE QEATASKVIVAVGDRSSNLRGECTPTQREV K V I D R S 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 827.4865 Q8TEM1 Q8TEM1 1577 1584 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0029873 102.71 By matching By MS/MS By MS/MS 1 5 1 1.0352 1.1007 15.743 6 Median NaN NaN NaN 0 0 Median 1.374 1.1504 NaN 1 0 Median 0.95815 1.0371 15.814 4 1 Median 1.4359 1.2631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21389000 11516000 9873100 0 0 0 538970 208830 330140 19595000 10778000 8816900 1255600 529590 726010 0 0 0 0 0 0 36197 3477 38035 191209;191210;191211;191212;191213;191214;191215 194265;194266;194267;194268;194269 194268 5 VIVDFSSPNIAK LVNGVQLPALGENKKVIVDFSSPNIAKEMH NKKVIVDFSSPNIAKEMHVGHLRSTIIGES K V I A K E 1 0 1 1 0 0 0 0 0 2 0 1 0 1 1 2 0 0 0 2 0 0 12 0 1288.7027 P54136 P54136 194 205 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 7.8145E-05 93.111 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.97858 0.95975 11.005 5 Median 1.1215 1.043 NaN 1 0 Median 1.1366 0.95975 NaN 1 0 Median 0.9663 0.98472 NaN 1 0 Median 0.95552 0.82471 4.9388 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53357000 25077000 28281000 34748000 15938000 18811000 6381100 2824100 3557000 9958300 5226700 4731500 2269600 1088100 1181400 0 0 0 0 0 0 36198 2480 38036 191216;191217;191218;191219;191220 194270;194271;194272;194273;194274 194271 4 VIVESASNIPK ______________________________ ______________________________ R V I P K T 1 0 1 0 0 0 1 0 0 2 0 1 0 0 1 2 0 0 0 2 0 0 11 0 1155.6499 Q9NZM1 Q9NZM1 4 14 MYOF Myoferlin yes yes 2 0.0068613 43.442 By MS/MS By MS/MS 1 1 0.80324 0.73486 20.919 2 Median 0.90385 0.85201 NaN 1 0 Median 0.71384 0.63382 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5422200 2961800 2460300 1931500 1006600 924940 3490700 1955300 1535400 0 0 0 0 0 0 0 0 0 0 0 0 36199 4192 38037 191221;191222 194275;194276 194276 2 VIVFDGVPSK VVEHDFIMATYLADRVIVFDGVPSKNTVAN YLADRVIVFDGVPSKNTVANSPQTLLAGMN R V I S K N 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 3 0 0 10 0 1059.5964 P61221 P61221 532 541 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 3 1 1.1205 0.94186 19.502 8 Median 0.99732 0.90106 21.889 2 0 Median 0.98349 0.83149 NaN 1 0 Median 1.3416 1.4268 NaN 1 0 Median 1.1221 0.95431 12.638 3 0 Median NaN NaN NaN 0 0 Median 1.141 0.92957 NaN 1 0 Median 66246000 32814000 33432000 39499000 19964000 19536000 6016400 3223800 2792700 3593300 1741700 1851600 13953000 6379400 7573500 0 0 0 3184500 1505700 1678800 36200 2550 38038 191223;191224;191225;191226;191227;191228;191229;191230 194277;194278;194279;194280;194281 194278 5 VIVGGSSEYK MVYSEEGAEDRTFARVIVGGSSEYKINNKV RTFARVIVGGSSEYKINNKVVQLHEYSEEL R V I Y K I 0 0 0 0 0 0 1 2 0 1 0 1 0 0 0 2 0 0 1 2 0 0 10 0 1037.5393 Q14683;G8JLG1;H0Y7K8 Q14683 97 106 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00033784 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 2 1.2722 1.1284 11.404 7 Median 1.337 1.2556 NaN 1 0 Median 1.333 1.1301 NaN 1 0 Median 0.87568 0.93533 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1726 1.2205 11.102 2 0 Median 1.2701 1.0669 2.5161 2 0 Median 61288000 28213000 33075000 1535500 684300 851170 8229400 3257000 4972400 11953000 6299300 5653500 0 0 0 26109000 12198000 13912000 13461000 5774800 7685700 36201 2889 38039 191231;191232;191233;191234;191235;191236;191237 194282;194283;194284;194285;194286;194287;194288;194289;194290;194291;194292;194293;194294 194290 13 VIVGGSSEYKINNK MVYSEEGAEDRTFARVIVGGSSEYKINNKV RVIVGGSSEYKINNKVVQLHEYSEELEKLG R V I N K V 0 0 2 0 0 0 1 2 0 2 0 2 0 0 0 2 0 0 1 2 0 0 14 1 1506.8042 Q14683;G8JLG1;H0Y7K8 Q14683 97 110 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 3.4476E-06 126.76 By MS/MS By MS/MS By MS/MS 1 2 1 1.0741 1.0845 20.087 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95011 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0411 1.1266 5.9305 2 0 Median 0.84125 0.75071 NaN 1 1 Median 40014000 19885000 20129000 0 0 0 0 0 0 4254000 1907900 2346100 0 0 0 30259000 14990000 15269000 5500900 2987000 2513900 36202 2889 38040 191238;191239;191240;191241 194295;194296;194297;194298;194299;194300 194298 6 VIVLSSSHSYQR CEKLLSWVKSSGCARVIVLSSSHSYQRNDL CARVIVLSSSHSYQRNDLQLRSTPFRYLLT R V I Q R N 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 4 0 0 1 2 0 0 12 0 1374.7256 V9GZ55;K7ENR6;Q969U7 V9GZ55 126 137 PSMG2 Proteasome assembly chaperone 2 yes no 2;3 1.8561E-06 140.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 1.0297 0.90978 18.537 10 Median 1.1652 1.0905 13.963 3 0 Median 1.1978 1.013 12.261 3 0 Plateau 0.88698 0.84475 10.386 2 0 Median 1.1014 0.91045 NaN 1 1 Median 0.62284 0.60922 NaN 1 0 Median NaN NaN NaN 0 0 Median 62796000 29219000 33578000 40735000 19148000 21587000 12668000 5419100 7249400 6697600 3215900 3481700 1277200 502220 775010 1418100 933410 484680 0 0 0 36203 1388 38041 191242;191243;191244;191245;191246;191247;191248;191249;191250;191251 194301;194302;194303;194304;194305;194306;194307;194308;194309;194310;194311 194310 11 VIVLWTANTER RRDIRDFRSSAGLDKVIVLWTANTERFCEV GLDKVIVLWTANTERFCEVIPGLNDTAENL K V I E R F 1 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 2 1 0 2 0 0 11 0 1300.7139 Q9NPH2;J3KRH4 Q9NPH2 223 233 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2 0.00011486 131.44 By MS/MS By matching 2 1 0.79339 0.78913 45.274 3 Median 0.6746 0.65495 26.358 2 0 Median 1.5127 1.3384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16664000 9941100 6722800 16218000 9777100 6440900 445920 164080 281840 0 0 0 0 0 0 0 0 0 0 0 0 36204 4052 38042 191252;191253;191254 194312;194313;194314 194312 3 VIVMPTTK INLEGGDIREESSYKVIVMPTTKEKCPRCW REESSYKVIVMPTTKEKCPRCWKYTAESSD K V I T K E 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 2 0 0 2 0 0 8 0 887.51502 Q9NSE4 Q9NSE4 977 984 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.0059586 73.26 By MS/MS 1 1.4311 1.2167 NaN 1 Median NaN NaN NaN 0 0 Median 1.4311 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5924100 2656900 3267200 0 0 0 5924100 2656900 3267200 0 0 0 0 0 0 0 0 0 0 0 0 36205 4103 38043 191255 194315;194316 194315 2 VIVMSATLDAGK MGVLKEVVRQRSDLKVIVMSATLDAGKFQI DLKVIVMSATLDAGKFQIYFDNCPLLTIPG K V I G K F 2 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 12 0 1203.6533 O43143 O43143 288 299 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.001017 76.465 By MS/MS By MS/MS By MS/MS 1 2 2 0.90096 0.92435 44.439 5 Median 0.90096 0.8963 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98953 1.0867 22.884 2 1 Median 0.70694 0.61207 63.316 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32680000 17880000 14800000 1632800 1002900 629940 0 0 0 14931000 8181300 6749600 16116000 8695400 7420600 0 0 0 0 0 0 36206 1553 38044;38045 191256;191257;191258;191259;191260 194317;194318;194319;194320;194321;194322 194320 502 6 VIVMTTK TVNDFWRMVFQENSRVIVMTTKEVERGKSK MVFQENSRVIVMTTKEVERGKSKCVKYWPD R V I T K E 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 2 0 0 2 0 0 7 0 790.46226 Q06124;A0A0U1RRI0 Q06124 352 358 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.030639 64.757 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4405500 0 4405500 1352400 0 1352400 3053100 0 3053100 0 0 0 0 0 0 0 0 0 0 0 0 36207 2721 38046 191261;191262 194323;194324 194324 2 VIVPNMEFR NLFEDQNTLTSICEKVIVPNMEFRAADEEA TSICEKVIVPNMEFRAADEEAFEDNSEEYI K V I F R A 0 1 1 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 2 0 0 9 0 1103.5798 P55060 P55060 347 355 CSE1L Exportin-2 yes yes 2 0.00081745 96.253 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 1 1 1.0277 0.966 12.709 6 Median 1.0047 0.966 3.2297 2 0 Median 1.0263 0.87747 NaN 1 0 Median 1.053 1.1191 NaN 1 0 Median 1.284 1.0972 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99059 0.80644 NaN 1 0 Median 97199000 48473000 48726000 84024000 42187000 41837000 2617000 1215700 1401300 8393500 4050100 4343400 787310 356600 430720 0 0 0 1377100 662860 714220 36208 2493 38047;38048 191263;191264;191265;191266;191267;191268;191269 194325;194326;194327;194328;194329;194330;194331 194327 1175 7 VIVQFQPSSVPDEWGTTQDGQTRPR LEFPSGETIVMHNPKVIVQFQPSSVPDEWG PDEWGTTQDGQTRPRVVKRGIDDNLDEIPD K V I P R V 0 2 0 2 0 4 1 2 0 1 0 0 0 1 3 2 3 1 0 3 0 0 25 1 2827.3889 Q9Y6Y8;A0A0C4DH82 Q9Y6Y8 398 422 SEC23IP SEC23-interacting protein yes no 3 7.2513E-05 27.081 By MS/MS By matching 1 1 0.797 0.82486 0.57769 2 Median 0.74547 0.82823 NaN 1 0 Median 0.8521 0.82149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8876700 5215700 3661000 8389200 4950500 3438700 487470 265180 222290 0 0 0 0 0 0 0 0 0 0 0 0 36209 4502 38049 191270;191271 194332;194333 194333 2 VIVQQPGER PIGGHINNYLLEKSRVIVQQPGERSFHSFY LLEKSRVIVQQPGERSFHSFYQLLQGGSEQ R V I E R S 0 1 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 9 0 1024.5665 K7EIG7;O94832;J3QRN6;J3KRL0 K7EIG7 103 111 MYO1D Unconventional myosin-Id yes no 2 0.011663 47.082 By matching By MS/MS 1 1 0.86385 0.9189 55.229 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5859 0.62182 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2737 1.3579 NaN 1 0 Median NaN NaN NaN 0 0 Median 2346300 1112400 1233900 0 0 0 0 0 0 762960 477880 285080 0 0 0 1583300 634540 948770 0 0 0 36210 1359 38050 191272;191273 194334 194334 1 VIVVGNPANTNCLTASK SQGAALDKYAKKSVKVIVVGNPANTNCLTA VVGNPANTNCLTASKSAPSIPKENFSCLTR K V I S K S 2 0 3 0 1 0 0 1 0 1 1 1 0 0 1 1 2 0 0 3 0 0 17 0 1756.9142 P40925;B9A041;C9JF79;C9JRL4 P40925 126 142 MDH1 Malate dehydrogenase, cytoplasmic;Malate dehydrogenase yes no 2 4.1531E-13 120.87 By MS/MS By MS/MS By MS/MS 1 2 1 0.95885 0.85772 16.933 4 Median 0.90474 0.82052 NaN 1 0 Median 0.91879 0.76721 22.041 2 1 Median 1.0162 0.97207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73456000 36379000 37077000 37048000 19581000 17466000 32851000 14995000 17856000 3557700 1802700 1755000 0 0 0 0 0 0 0 0 0 36211 2291 38051 191274;191275;191276;191277 194335;194336;194337;194338;194339;194340;194341;194342 194335 8 VIWLQSVR LLVSVLEQGLPPSHRVIWLQSVRILSRDRN GLPPSHRVIWLQSVRILSRDRNCLDPFTSR R V I V R I 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 0 2 0 0 8 0 999.58655 Q9NPQ8;E9PSI0 Q9NPQ8 64 71 RIC8A Synembryn-A yes no 2 0.0069954 68.915 By MS/MS By matching By matching By matching 2 2 1 1 1.3702 1.2016 22.397 6 Median 1.5625 1.5143 7.5104 2 0 Median 1.2415 1.0843 21.467 2 0 Median NaN NaN NaN 0 0 Median 1.0609 0.92388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3104 1.144 NaN 1 0 Median 13769000 6139100 7630200 7956600 3310300 4646400 5300800 2593700 2707100 0 0 0 113320 62199 51116 0 0 0 398550 172890 225660 36212 4057 38052 191278;191279;191280;191281;191282;191283 194343;194344 194343 2 VIYEGLTNYEK SKYEELECLYAAVGKVIYEGLTNYEKATNA AVGKVIYEGLTNYEKATNANPSQLFGTLMI K V I E K A 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 1 0 2 1 0 0 11 0 1327.666 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 2230 2240 TRRAP Transformation/transcription domain-associated protein yes no 2 3.3312E-09 123.88 By MS/MS By MS/MS 1 1 1.2139 1.192 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2139 1.192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5709300 2559800 3149500 0 0 0 0 0 0 0 0 0 5709300 2559800 3149500 0 0 0 0 0 0 36213 991 38053 191284;191285 194345;194346;194347 194345 3 VIYHLDEEETPYLVK MAGSSTGGGGVGETKVIYHLDEEETPYLVK VIYHLDEEETPYLVKIPVPAERITLGDFKS K V I V K I 0 0 0 1 0 0 3 0 1 1 2 1 0 0 1 0 1 0 2 2 0 0 15 0 1846.9353 I3L2N2;O14641;I3L2W9 I3L2N2 16 30 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes no 3 0.03904 14.228 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 0.52109 0.47028 48.635 5 Median 1.1173 1.1244 NaN 1 0 Median 0.52109 0.47028 NaN 1 0 Median 0.31425 0.34706 NaN 1 0 Median 0.43194 0.38226 NaN 1 0 Median 0.6527 0.71098 NaN 1 0 Median NaN NaN NaN 0 0 Median 7920600 5328000 2592600 1307000 621420 685590 766640 424210 342430 4661800 3577000 1084800 140490 90873 49617 1044700 614490 430170 0 0 0 36214 1284 38054 191286;191287;191288;191289;191290 194348 194348 1 VIYVLPMLTIK EILGASLSAPLTSYKVIYVLPMLTIKEDKG TSYKVIYVLPMLTIKEDKGTGVVTSVPSDS K V I I K E 0 0 0 0 0 0 0 0 0 2 2 1 1 0 1 0 1 0 1 2 0 0 11 0 1288.7829 Q9P2J5 Q9P2J5 371 381 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.055005 44.318 By MS/MS 1 1.121 0.98673 NaN 1 Median NaN NaN NaN 0 0 Median 1.121 0.98673 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1642500 675080 967450 0 0 0 1642500 675080 967450 0 0 0 0 0 0 0 0 0 0 0 0 36215 4224 38055 191291 194349 194349 1903 1 VKADRDESSPYAAMLAAQDVAQR LSGKETICRVTGGMKVKADRDESSPYAAML SPYAAMLAAQDVAQRCKELGITALHIKLRA K V K Q R C 6 2 0 3 0 2 1 0 0 0 1 1 1 0 1 2 0 0 1 2 0 0 23 2 2491.2125 P62263;A0A2R8Y811;E5RH77 P62263 62 84 RPS14 40S ribosomal protein S14 yes no 3;4 5.4666E-19 85.932 By MS/MS By MS/MS By MS/MS 2 2 3 0.95164 1.1117 14.872 7 Median 0.88981 1.0319 5.441 2 0 Median 1.1195 1.2392 24.409 2 0 Median 1.0221 1.194 11.298 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75474000 36953000 38521000 22809000 12184000 10626000 1876200 851420 1024700 50789000 23918000 26871000 0 0 0 0 0 0 0 0 0 36216 386 38056;38057 191292;191293;191294;191295;191296;191297;191298 194350;194351;194352;194353;194354;194355;194356;194357;194358;194359 194353 180 10 VKAEEDKIPLLVVGNK ESFTATAEFREQILRVKAEEDKIPLLVVGN KAEEDKIPLLVVGNKSDLEERRQVPVEEAR R V K N K S 1 0 1 1 0 0 2 1 0 1 2 3 0 0 1 0 0 0 0 3 0 0 16 2 1751.0193 P11234;C9J6B1;C9JQB3 P11234 114 129 RALB Ras-related protein Ral-B yes no 3 0.025949 18.579 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.032 0.99892 16.802 5 Median 0.72974 0.77066 NaN 1 0 Median 1.0741 1.051 NaN 1 0 Median 0.88531 0.99892 NaN 1 0 Median 1.032 0.94894 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3065 1.2233 NaN 1 0 Median 19651000 10286000 9365100 11955000 6718200 5236700 1855900 740110 1115800 4112500 2031300 2081200 1217200 506510 710660 0 0 0 510610 289900 220710 36217 1959 38058 191299;191300;191301;191302;191303 194360 194360 1 VKAEGPGLSR SPIRVKVEPSHDASKVKAEGPGLSRTGVEL HDASKVKAEGPGLSRTGVELGKPTHFTVNA K V K S R T 1 1 0 0 0 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 0 0 10 1 1012.5665 P21333;Q60FE5;A0A087WWY3 P21333 875 884 FLNA Filamin-A no no 2 0.020839 53.327 By matching By MS/MS By matching 2 3 1 0.92197 0.91602 23.375 6 Median 1.0355 1.0454 4.7999 2 0 Median 0.80347 0.77203 5.4408 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2181 1.3689 NaN 1 0 Median NaN NaN NaN 0 0 Median 4262600 2220100 2042400 593370 279010 314360 3347600 1794500 1553100 0 0 0 0 0 0 321650 146660 174990 0 0 0 36218 2088;3120 38059 191304;191305;191306;191307;191308;191309 194361;194362 194362 2 VKAEPAKIEAFR HVEEEGKGKDASGNKVKAEPAKIEAFRASL GNKVKAEPAKIEAFRASLSKLGDVYVNDAF K V K F R A 3 1 0 0 0 0 2 0 0 1 0 2 0 1 1 0 0 0 0 1 0 0 12 2 1357.7718 P00558 P00558 140 151 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 0.00020927 62.924 By MS/MS By matching By matching 3 1 1 0.95433 1.0104 104.52 5 Median 0.95433 1.0104 9.2055 3 0 Median 9.9336 10.364 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92525 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25083000 11878000 13205000 21585000 10677000 10908000 1105200 120650 984520 0 0 0 2392300 1080400 1311900 0 0 0 0 0 0 36219 1824 38060 191310;191311;191312;191313;191314 194363;194364;194365;194366;194367 194365 4 VKAFGPGLQGGSAGSPAR SPFPLEAVAPTKPSKVKAFGPGLQGGSAGS FGPGLQGGSAGSPARFTIDTKGAGTGGLGL K V K A R F 3 1 0 0 0 1 0 5 0 0 1 1 0 1 2 2 0 0 0 1 0 0 18 1 1655.8744 P21333;Q60FE5;A0A087WWY3 P21333 1070 1087 FLNA Filamin-A no no 3 9.1198E-07 80.609 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 0.71058 0.73342 11.384 5 Median 0.78594 0.80075 12.42 2 0 Median 0.71058 0.66242 NaN 1 0 Median 0.57236 0.68114 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70005 0.79467 NaN 1 0 Median NaN NaN NaN 0 0 Median 18325000 10270000 8055100 9654300 5459600 4194600 4731300 2369900 2361400 2199500 1417200 782300 0 0 0 1739900 1023100 716820 0 0 0 36220 2088;3120 38061 191315;191316;191317;191318;191319 194368;194369;194370;194371;194372;194373 194368 6 VKASGPGLNTTGVPASLPVEFTIDAK SPFKVKVLPTHDASKVKASGPGLNTTGVPA GVPASLPVEFTIDAKDAGEGLLAVQITDPE K V K A K D 3 0 1 1 0 0 1 3 0 1 2 2 0 1 3 2 3 0 0 3 0 0 26 1 2568.3799 P21333;Q60FE5;A0A087WWY3 P21333 1548 1573 FLNA Filamin-A no no 3 0.051082 17.527 By MS/MS 1 0.67993 0.68645 NaN 1 Median 0.67993 0.68645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2564600 1533800 1030800 2564600 1533800 1030800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36221 2088;3120 38062 191320 194374 194374 1 VKDAMGWLTLQK YSKDAPGTGEEAQGKVKDAMGWLTLQKEKL QGKVKDAMGWLTLQKEKLQKLLKDSENDTY K V K Q K E 1 0 0 1 0 1 0 1 0 0 2 2 1 0 0 0 1 1 0 1 0 0 12 1 1388.7486 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 299 310 SYNE2 Nesprin-2 yes no 3 0.060509 14.687 By MS/MS 1 0.76025 0.86428 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76025 0.86428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2290600 1240600 1050100 0 0 0 0 0 0 2290600 1240600 1050100 0 0 0 0 0 0 0 0 0 36222 3521 38063 191321 194375;194376 194376 2 VKDAQQVEPEGQEKPSPATVR KPGPIGKERSLKNRKVKDAQQVEPEGQEKP VEPEGQEKPSPATVRSTDPVTTKETKAVSE K V K V R S 2 1 0 1 0 3 3 1 0 0 0 2 0 0 3 1 1 0 0 3 0 0 21 2 2292.171 E7EPN9;Q9Y520;H7C5N8;A0A2R8Y7F4;A0A2R8YET2 E7EPN9 2130 2150 PRRC2C Protein PRRC2C yes no 4 0.012544 19.587 By MS/MS By matching By matching By MS/MS 2 1 1 2 0.54454 0.58405 41.446 6 Median 0.54454 0.58405 1.7081 2 0 Median 0.3439 0.35823 NaN 1 0 Median 0.63774 0.84629 NaN 1 0 Median 0.69511 0.78508 58.696 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7372000 4314200 3057700 3811700 2261300 1550400 1429900 998820 431090 833830 418890 414940 1296500 635190 661330 0 0 0 0 0 0 36223 872 38064 191322;191323;191324;191325;191326;191327 194377;194378;194379;194380;194381 194377 5 VKDAYLVHLIQR TVEQLDQRYLLVPEKVKDAYLVHLIQRFQD PEKVKDAYLVHLIQRFQDEHEDWSIIIFTN K V K Q R F 1 1 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 0 1 2 0 0 12 1 1453.8405 Q9Y6V7 Q9Y6V7 230 241 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 3 0.033396 21.301 By MS/MS 1 0.80006 0.81043 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80006 0.81043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6550700 3496900 3053800 0 0 0 0 0 0 6550700 3496900 3053800 0 0 0 0 0 0 0 0 0 36224 4497 38065 191328 194382 194382 1 VKDDIESLHDK IRGAIREYQTQLIQRVKDDIESLHDKFKVQ LIQRVKDDIESLHDKFKVQYPQSQACKMSH R V K D K F 0 0 0 3 0 0 1 0 1 1 1 2 0 0 0 1 0 0 0 1 0 0 11 1 1297.6514 Q14204 Q14204 612 622 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.036067 21.301 By matching By MS/MS By MS/MS 1 1 1 1.0074 0.95733 19.572 3 Median 0.72769 0.78462 NaN 1 0 Median 1.0074 0.95733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1423 1.1605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3408100 1504100 1904000 513630 234780 278850 1611500 668000 943450 0 0 0 1283100 601330 681730 0 0 0 0 0 0 36225 2865 38066 191329;191330;191331 194383;194384 194383 2 VKDDIESLHDKFK IRGAIREYQTQLIQRVKDDIESLHDKFKVQ QRVKDDIESLHDKFKVQYPQSQACKMSHVR R V K F K V 0 0 0 3 0 0 1 0 1 1 1 3 0 1 0 1 0 0 0 1 0 0 13 2 1572.8148 Q14204 Q14204 612 624 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 7.5753E-05 80.3 By MS/MS By MS/MS By MS/MS 3 1 1 0.76543 0.90414 NaN 1 Median 0.76543 0.90414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94328000 17383000 76945000 47945000 17383000 30562000 30693000 0 30693000 15690000 0 15690000 0 0 0 0 0 0 0 0 0 36226 2865 38067 191332;191333;191334;191335;191336 194385;194386;194387;194388;194389;194390 194386 6 VKDFATVYVEAIK RHFWQQDDPQSSWDRVKDFATVYVEAIKDS DRVKDFATVYVEAIKDSGRDYVAQFEASAL R V K I K D 2 0 0 1 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 3 0 0 13 1 1481.813 CON__P15497 CON__P15497 34 46 yes yes 3 0.011004 41.577 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7851800 7851800 0 7851800 7851800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 36227 758 38068 191337 194391 194391 1 VKDILQNVFK SPAAWNKEDFPWSGKVKDILQNVFKLEKFR PWSGKVKDILQNVFKLEKFRPLQLETINVT K V K F K L 0 0 1 1 0 1 0 0 0 1 1 2 0 1 0 0 0 0 0 2 0 0 10 1 1202.7023 P46063;F8WA66;F8WD97;F5H2L2;F5H4P4;F5H3W0 P46063 79 88 RECQL ATP-dependent DNA helicase Q1 yes no 2;3 0.00323 96.711 By matching By matching By MS/MS By MS/MS 2 1 3 4 1.0223 1.0757 15.907 10 Median 0.99869 0.99438 1.1023 2 0 Median 1.3834 1.3177 NaN 1 0 Median 0.96973 1.0743 4.6351 3 0 Median 1.1767 1.1176 23.615 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47840000 22766000 25074000 2273600 1023100 1250500 175300 83831 91468 38005000 18407000 19599000 7385800 3252700 4133100 0 0 0 0 0 0 36228 2337 38069 191338;191339;191340;191341;191342;191343;191344;191345;191346;191347 194392;194393;194394;194395;194396 194395 5 VKDLESLFHR SAKKREGELTVAQGRVKDLESLFHRSEVEL VAQGRVKDLESLFHRSEVELAAALSDKRGL R V K H R S 0 1 0 1 0 0 1 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1242.6721 Q03252 Q03252 149 158 LMNB2 Lamin-B2 yes yes 2;3 0.00012814 135.79 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 7 5 1.207 1.1675 26.546 17 Median 1.207 1.2268 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0273 1.0659 3.8227 2 0 Median 2.1775 2.042 56.386 2 0 Median 1.0301 1.1345 11.92 7 1 Median 1.4787 1.2863 12.519 5 0 Median 177050000 82713000 94335000 688920 249570 439350 0 0 0 23194000 10366000 12829000 5939700 1621700 4318000 137700000 66741000 70962000 9522200 3735400 5786800 36229 2709 38070 191348;191349;191350;191351;191352;191353;191354;191355;191356;191357;191358;191359;191360;191361;191362;191363;191364 194397;194398;194399;194400;194401;194402;194403;194404;194405;194406;194407;194408;194409 194406 13 VKDLVLSVHNR DLWIRYSQYLDRQLKVKDLVLSVHNRAIRN RQLKVKDLVLSVHNRAIRNCPWTVALWSRY K V K N R A 0 1 1 1 0 0 0 0 1 0 2 1 0 0 0 1 0 0 0 3 0 0 11 1 1278.7408 A0A499FI31;Q15020 A0A499FI31 378 388 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 0.00038944 73.848 By MS/MS By MS/MS 1 1 0.93097 0.91748 27.688 2 Median 1.0732 1.1159 NaN 1 0 Median 0.80757 0.75435 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10135000 4827800 5307000 3263900 1517300 1746700 6870900 3310600 3560400 0 0 0 0 0 0 0 0 0 0 0 0 36230 473 38071 191365;191366 194410;194411;194412 194411 3 VKDMAAPGTSSVPAPTAGNAEK DIDEQIESMFNSKKRVKDMAAPGTSSVPAP GTSSVPAPTAGNAEKLEIAKRLALRINAQK R V K E K L 5 0 1 1 0 0 1 2 0 0 0 2 1 0 3 2 2 0 0 2 0 0 22 1 2098.0365 Q7L014;A0A0C4DG89 Q7L014 827 848 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 3 9.8313E-07 39.647 By matching By MS/MS By MS/MS 1 1 1 0.5564 0.6318 26.51 3 Median NaN NaN NaN 0 0 Median 0.99806 0.89245 NaN 1 0 Median 0.5471 0.6318 NaN 1 0 Median 0.5564 0.53001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12525000 8074500 4450700 0 0 0 1112900 431750 681160 9422900 6328600 3094300 1989500 1314200 675260 0 0 0 0 0 0 36231 3216 38072 191367;191368;191369 194413;194414;194415 194414 3 VKDMAAPGTSSVPAPTAGNAEKLEIAK DIDEQIESMFNSKKRVKDMAAPGTSSVPAP PAPTAGNAEKLEIAKRLALRINAQKNLGIE R V K A K R 6 0 1 1 0 0 2 2 0 1 1 3 1 0 3 2 2 0 0 2 0 0 27 2 2652.3793 Q7L014;A0A0C4DG89 Q7L014 827 853 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 4 2.8944E-05 32.675 By MS/MS 1 0.76549 0.91985 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76549 0.91985 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12972000 7518300 5453400 0 0 0 0 0 0 12972000 7518300 5453400 0 0 0 0 0 0 0 0 0 36232 3216 38073 191370 194416;194417 194416 2 VKDTDDVPMILVGNK STFNDLQDLREQILRVKDTDDVPMILVGNK VKDTDDVPMILVGNKCDLEDERVVGKEQGQ R V K N K C 0 0 1 3 0 0 0 1 0 1 1 2 1 0 1 0 1 0 0 3 0 0 15 1 1642.86 P61224;A6NIZ1;F5H7Y6;E7ESV4;F5GX62;F5H004;F5H6R7;F5GZG1;B7ZB78;F5H823 P61224 103 117 RAP1B Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein yes no 3 0.022251 21.093 By MS/MS By matching 1 1 1.1056 1.0669 9.4453 2 Median 1.1223 1.1406 NaN 1 0 Median 1.0891 0.99797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14625000 6592700 8032500 13235000 6006100 7229200 1389900 586610 803330 0 0 0 0 0 0 0 0 0 0 0 0 36233 2551 38074 191371;191372 194418 194418 1 VKEDENVPFLLVGNK ESFAATADFREQILRVKEDENVPFLLVGNK VKEDENVPFLLVGNKSDLEDKRQVSVEEAK R V K N K S 0 0 2 1 0 0 2 1 0 0 2 2 0 1 1 0 0 0 0 3 0 0 15 1 1699.9145 P11233;H7C3P7 P11233 114 128 RALA Ras-related protein Ral-A yes no 2;3 0.0004587 79.659 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 2 2 2 0.96862 0.97369 9.4932 11 Median 0.95945 0.97369 5.7632 3 2 Median 1.0135 0.92746 18.41 2 0 Median 0.96198 0.95864 5.6592 2 0 Median 1.1503 1.0343 5.8238 2 0 Median NaN NaN NaN 0 0 Median 0.97236 0.84391 1.3978 2 0 Median 102470000 52364000 50105000 73867000 38295000 35573000 6768900 3423000 3345900 18396000 9032900 9362700 1342100 647090 695040 0 0 0 2094700 966400 1128300 36234 1958 38075 191373;191374;191375;191376;191377;191378;191379;191380;191381;191382;191383 194419;194420;194421;194422;194423;194424 194422 6 VKEDPDGEHAR AEVLNKHSLSGRPLKVKEDPDGEHARRAMQ RPLKVKEDPDGEHARRAMQKVMATTGGMGM K V K A R R 1 1 0 2 0 0 2 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 11 1 1251.5844 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7 A0A087X0X3 144 154 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 3 0.044922 29.936 By MS/MS 2 0.58571 0.65297 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58571 0.65297 NaN 1 0 Median NaN NaN NaN 0 0 Median 365240 208890 156350 0 0 0 0 0 0 0 0 0 0 0 0 365240 208890 156350 0 0 0 36235 116 38076 191384;191385 194425;194426 194426 2 VKEDRFENNELFAK KLVAEDLSQDCFWTKVKEDRFENNELFAKL KVKEDRFENNELFAKLTLTFSAQTKTLLAK K V K A K L 1 1 2 1 0 0 3 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 14 2 1737.8686 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 801 814 DIAPH1 Protein diaphanous homolog 1 yes no 3 0.073978 11.105 By MS/MS By matching By matching 1 1 1 1.0647 1.1917 14.085 3 Median 0.93197 0.98516 NaN 1 0 Median 1.3092 1.297 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0647 1.1917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35300000 16895000 18405000 31716000 15404000 16312000 2278100 902800 1375300 0 0 0 1306100 588200 717920 0 0 0 0 0 0 36236 274 38077 191386;191387;191388 194427 194427 1 VKEEDESANSLRPGALFFSR APSQKVTVTKLGQFRVKEEDESANSLRPGA ESANSLRPGALFFSRINKTSPVTASDPAGP R V K S R I 2 2 1 1 0 0 3 1 0 0 2 1 0 2 1 3 0 0 0 1 0 0 20 2 2251.1233 F5H8D7;P18887;M0QYS5;M0R1U8;M0QZ96;M0R0D2 F5H8D7 144 163 XRCC1 DNA repair protein XRCC1 yes no 3;4 5.7148E-10 85.937 By MS/MS By matching By matching 2 3 1 0.77325 0.79053 14.839 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61805 0.69337 0.87926 2 0 Median 0.93475 0.95159 15.841 3 0 Plateau NaN NaN NaN 0 0 Median 1.0224 0.88626 NaN 1 0 Median 21068000 11974000 9094200 0 0 0 0 0 0 18329000 10530000 7798300 2469900 1313400 1156400 0 0 0 269640 130150 139480 36237 1047 38078 191389;191390;191391;191392;191393;191394 194428;194429;194430;194431 194428 4 VKEESQLPGTGGPEDVLQPVQR QERRTQEVLQAVAEKVKEESQLPGTGGPED PGTGGPEDVLQPVQRAEAERPEEQAEASGL K V K Q R A 0 1 0 1 0 3 3 3 0 0 2 1 0 0 3 1 1 0 0 3 0 0 22 1 2362.2129 Q02952 Q02952 1050 1071 AKAP12 A-kinase anchor protein 12 yes yes 3 1.525E-23 115.85 By MS/MS By MS/MS By matching 2 2 1 0.70851 0.65301 18.709 5 Median 0.71778 0.73856 22.412 2 0 Median 0.73194 0.68357 6.4699 2 0 Median NaN NaN NaN 0 0 Median 0.5114 0.51831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123010000 67948000 55062000 95277000 53040000 42237000 27397000 14709000 12688000 0 0 0 336410 199410 136990 0 0 0 0 0 0 36238 2705 38079 191395;191396;191397;191398;191399 194432;194433;194434;194435;194436;194437;194438;194439;194440;194441;194442 194434 11 VKEFLHNQGK GQIVLKNDHQEDFWKVKEFLHNQGKQKYTL EDFWKVKEFLHNQGKQKYTLPLYHAMMGGS K V K G K Q 0 0 1 0 0 1 1 1 1 0 1 2 0 1 0 0 0 0 0 1 0 0 10 1 1198.6459 Q9H4A4;A6NKB8 Q9H4A4 591 600 RNPEP Aminopeptidase B yes no 2;3 0.025699 41.029 By matching By MS/MS 2 2 1.1209 1.0627 12.384 4 Median 0.99589 0.95316 8.6516 2 0 Median 1.2275 1.153 4.8074 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6268800 2897500 3371300 2196900 1064700 1132200 4071900 1832800 2239100 0 0 0 0 0 0 0 0 0 0 0 0 36239 3964 38080 191400;191401;191402;191403 194443;194444;194445 194444 3 VKEGMNIVEAMER AKTEWLDGKHVVFGKVKEGMNIVEAMERFG GKVKEGMNIVEAMERFGSRNGKTSKKITIA K V K E R F 1 1 1 0 0 0 3 1 0 1 0 1 2 0 0 0 0 0 0 2 0 0 13 1 1504.7378 P62937 P62937 132 144 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2;3 3.4473E-07 145.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 8 16 10 6 6 1.0838 1.0589 28.062 57 Median 1.0843 1.0477 11.44 11 1 Median 1.2177 1.0922 58.716 8 0 Median 1.0404 1.0801 8.9847 16 0 Median 1.1459 1.0038 16.975 10 1 Median 1.0877 1.2284 35.463 6 0 Median 1.1137 0.89074 24.39 6 0 Median 5710500000 2684300000 3026100000 1835200000 865180000 970070000 204920000 88818000 116110000 3470300000 1640000000 1830200000 133810000 60417000 73393000 45435000 21100000 24334000 20803000 8787100 12016000 36240 2611 38081;38082;38083 191404;191405;191406;191407;191408;191409;191410;191411;191412;191413;191414;191415;191416;191417;191418;191419;191420;191421;191422;191423;191424;191425;191426;191427;191428;191429;191430;191431;191432;191433;191434;191435;191436;191437;191438;191439;191440;191441;191442;191443;191444;191445;191446;191447;191448;191449;191450;191451;191452;191453;191454;191455;191456;191457;191458;191459;191460 194446;194447;194448;194449;194450;194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477;194478;194479;194480;194481;194482;194483;194484;194485;194486;194487;194488;194489;194490;194491;194492;194493;194494;194495;194496;194497;194498;194499;194500;194501;194502;194503;194504;194505;194506;194507;194508;194509;194510;194511;194512;194513;194514;194515;194516;194517;194518;194519;194520;194521;194522;194523;194524;194525;194526;194527;194528;194529;194530;194531;194532;194533;194534 194532 1271;1272 89 VKEHINSVSAMK NKCRLIRGWDDLFNKVKEHINSVSAMKLSP FNKVKEHINSVSAMKLSPYYKVFEEDALSW K V K M K L 1 0 1 0 0 0 1 0 1 1 0 2 1 0 0 2 0 0 0 2 0 0 12 1 1341.7075 Q14204 Q14204 1497 1508 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.017409 25.322 By MS/MS By MS/MS By MS/MS 1 1 1 1.114 1.1279 1.1117 3 Median NaN NaN NaN 0 0 Median 1.1851 1.1279 NaN 1 0 Median 0.97523 1.1086 NaN 1 0 Median 1.114 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5923400 2674800 3248600 0 0 0 3580000 1553300 2026700 1303600 649700 653930 1039800 471810 567980 0 0 0 0 0 0 36241 2865 38084 191461;191462;191463 194535;194536;194537;194538;194539 194537 5 VKEIGSTMSGRK NFAIVFTDVKRPGYRVKEIGSTMSGRKGTD GYRVKEIGSTMSGRKGTDDSMTLQSQKFQI R V K R K G 0 1 0 0 0 0 1 2 0 1 0 2 1 0 0 2 1 0 0 1 0 0 12 2 1291.6918 O00422;H7BZW6 O00422 103 114 SAP18 Histone deacetylase complex subunit SAP18 yes no 2 0.022283 55.064 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4731100 0 4731100 0 0 0 0 0 0 0 0 0 0 0 0 4731100 0 4731100 0 0 0 36242 1253 38085 191464 194540 194540 419 1 VKELQAEQEDR LAANLDRAKAGLLERVKELQAEQEDRALRS LLERVKELQAEQEDRALRSFKLSVTVDPKY R V K D R A 1 1 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1343.6681 Q00341;A0A024R4E5;H0Y394 Q00341 1038 1048 HDLBP Vigilin yes no 2;3 0.0007189 83 By MS/MS By MS/MS By matching 3 1 1 1.093 1.1196 32.114 5 Median 1.3172 1.352 37.607 3 0 Plateau 1.0808 1.0222 NaN 1 0 Median 1.3268 1.5228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4280800 1956100 2324600 1449200 730190 718980 2480000 1076100 1403900 351630 149860 201760 0 0 0 0 0 0 0 0 0 36243 4 38086 191465;191466;191467;191468;191469 194541;194542;194543;194544 194543 4 VKEPEPQYFR KPVAPVAPPELVPMKVKEPEPQYFRFEGVW LVPMKVKEPEPQYFRFEGVWLTETGMALLR K V K F R F 0 1 0 0 0 1 2 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 10 1 1291.6561 O14686 O14686 1577 1586 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.00042123 66.595 By MS/MS By MS/MS 1 1 1.0079 1.047 18.406 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79347 0.91927 NaN 1 0 Median 1.2803 1.1926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10013000 4711600 5301100 0 0 0 0 0 0 7440400 3650300 3790100 2572300 1061300 1511000 0 0 0 0 0 0 36244 1490 38087 191470;191471 194545;194546 194545 2 VKEPSVQEATSTSDILK EKKEKTPELPEPSVKVKEPSVQEATSTSDI EPSVQEATSTSDILKVPKPEPIPEPKEPSP K V K L K V 1 0 0 1 0 1 2 0 0 1 1 2 0 0 1 3 2 0 0 2 0 0 17 1 1830.9575 M0R088;E9PCT1;A9Z1X7;Q8IYB3 M0R088 191 207 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2;3 2.4426E-06 88.552 By MS/MS By matching By MS/MS By matching 2 2 3 2 0.77545 0.81165 19.47 9 Median 0.76134 0.7983 2.3447 2 1 Median 1.0856 1.0224 28.852 2 0 Median 0.6719 0.76879 10.96 3 0 Median 0.97386 0.93944 30.836 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70660000 39610000 31051000 19763000 10943000 8820100 3096700 1551400 1545300 44924000 25537000 19387000 2876200 1578300 1297900 0 0 0 0 0 0 36245 553 38088 191472;191473;191474;191475;191476;191477;191478;191479;191480 194547;194548;194549;194550;194551;194552 194547 6 VKESMQMQVEAER RCLRYEIKDIHVPPRVKESMQMQVEAERRK PRVKESMQMQVEAERRKRATVLESEGTRES R V K E R R 1 1 0 0 0 2 3 0 0 0 0 1 2 0 0 1 0 0 0 2 0 0 13 1 1563.7385 Q9UJZ1;A0A087WYB4 Q9UJZ1 186 198 STOML2 Stomatin-like protein 2, mitochondrial yes no 3 0.00050022 51.726 By MS/MS By MS/MS 1 1 1.0733 1.0747 3.4278 2 Median 0.97912 1.049 NaN 1 0 Median 1.1765 1.1011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7737800 3854600 3883100 5563300 2963600 2599700 2174500 891010 1283500 0 0 0 0 0 0 0 0 0 0 0 0 36246 4304 38089 191481;191482 194553;194554;194555;194556;194557 194554 5 VKETQEDKLEGGAAK EMQPTELVSKEREEKVKETQEDKLEGGAAK VKETQEDKLEGGAAKRETKEVQTNELKAEK K V K A K R 2 0 0 1 0 1 3 2 0 0 1 3 0 0 0 0 1 0 0 1 0 0 15 2 1601.8261 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 177 191 EPB41L2 Band 4.1-like protein 2 yes no 2;3;4 0.0012795 65.395 By matching By MS/MS By matching By matching By matching 6 3 3 2 2 0.99547 1.0153 14.945 16 Median 1.0285 1.0386 20.809 6 0 Median 1.116 1.0599 5.6344 3 0 Median 0.75035 0.90166 5.9878 3 0 Median 0.95089 0.97378 8.2507 2 0 Median 1.0253 1.1712 13.809 2 0 Median NaN NaN NaN 0 0 Median 16696000 8054400 8642000 2238400 1092200 1146100 12376000 5866400 6510000 1075800 628460 447330 421420 186370 235050 584420 280970 303440 0 0 0 36247 1573 38090 191483;191484;191485;191486;191487;191488;191489;191490;191491;191492;191493;191494;191495;191496;191497;191498 194558;194559;194560;194561 194561 4 VKEVLPHVPLGVIQR PGPSPDVQLATLAQRVKEVLPHVPLGVIQR VKEVLPHVPLGVIQRDLAKTGCVDLTITNL R V K Q R D 0 1 0 0 0 1 1 1 1 1 2 1 0 0 2 0 0 0 0 4 0 0 15 1 1683.0196 Q9Y679 Q9Y679 304 318 AUP1 Ancient ubiquitous protein 1 yes yes 3 0.00018569 48.177 By MS/MS By matching By matching 1 1 1 1.7536 1.7927 32.713 3 Median 1.0083 1.0803 NaN 1 0 Median 1.9115 1.7927 NaN 1 0 Median 1.7536 1.9921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17390000 8154400 9235500 9542900 5532100 4010700 3270500 1046200 2224400 4576500 1576100 3000300 0 0 0 0 0 0 0 0 0 36248 4482 38091 191499;191500;191501 194562 194562 1 VKEVLTDNNLGQR VAMSPELDTYGITKRVKEVLTDNNLGQRLF KRVKEVLTDNNLGQRLFGETILGLTQGSVS R V K Q R L 0 1 2 1 0 1 1 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 13 1 1484.7947 A0A2R8Y852;A0A2R8YDI1;O14529 A0A2R8Y852 1090 1102 CUX2 Homeobox protein cut-like 2 no no 2;3 3.1939E-10 112.13 By MS/MS By MS/MS 2 1 1.0425 1.1215 2.9143 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95505 1.1449 NaN 1 0 Median 1.1381 1.0987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13218000 6786100 6432300 0 0 0 0 0 0 10319000 5490200 4829000 2899200 1295900 1603300 0 0 0 0 0 0 36249 388 38092 191502;191503;191504 194563;194564;194565 194564 3 VKEYKVEILNPPR EVENREENLLKISRRVKEYKVEILNPPREG RRVKEYKVEILNPPREGKKLLVLDVDYTLF R V K P R E 0 1 1 0 0 0 2 0 0 1 1 2 0 0 2 0 0 0 1 2 0 0 13 2 1583.9035 Q8WVY7 Q8WVY7 122 134 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 yes yes 3 0.00066418 49.333 By MS/MS 1 0.94123 0.99653 NaN 1 Median 0.94123 0.99653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3202400 1977300 1225100 3202400 1977300 1225100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36250 3504 38093 191505 194566 194566 1 VKGDFDVSVPK KISIPDVDLDLKGPKVKGDFDVSVPKVEGT KGPKVKGDFDVSVPKVEGTLKGPEVDLKGP K V K P K V 0 0 0 2 0 0 0 1 0 0 0 2 0 1 1 1 0 0 0 3 0 0 11 1 1189.6343 Q09666 Q09666 4863 4873 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00093219 105.46 By MS/MS By MS/MS By MS/MS 1 1 4 1.0264 1.0428 9.1575 3 Median NaN NaN NaN 0 0 Median 0.96741 0.92782 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1013 1.0765 4.5109 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88432000 39419000 49013000 0 0 0 59253000 32818000 26435000 9243600 0 9243600 19936000 6600700 13335000 0 0 0 0 0 0 36251 2749 38094 191506;191507;191508;191509;191510;191511 194567;194568;194569;194570;194571;194572 194569 6 VKGDLDIAGPNLEGDFKGPK KVSMPDVELNLKSPKVKGDLDIAGPNLEGD DIAGPNLEGDFKGPKVDIKAPEVNLNAPDV K V K P K V 1 0 1 3 0 0 1 4 0 1 2 3 0 1 2 0 0 0 0 1 0 0 20 2 2069.0793 Q09666 Q09666 3429 3448 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3;4 2.7421E-14 105.52 By MS/MS By matching By MS/MS By matching 2 1 2 1 0.84534 1.0237 16.844 6 Median 0.78635 0.92885 1.4404 2 1 Median 1.3003 1.3545 NaN 1 0 Median 0.81519 1.0121 13.925 2 0 Median 1.2183 1.2347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89732000 46777000 42955000 70249000 37018000 33231000 3584900 1577500 2007400 15712000 8098800 7612800 186610 83261 103350 0 0 0 0 0 0 36252 2749 38095 191512;191513;191514;191515;191516;191517 194573;194574;194575;194576;194577;194578;194579 194573 7 VKGDMDISLPK KISMPEVDLNLKGPKVKGDMDISLPKVEGD KGPKVKGDMDISLPKVEGDLKGPEVDIRDP K V K P K V 0 0 0 2 0 0 0 1 0 1 1 2 1 0 1 1 0 0 0 1 0 0 11 1 1201.6377 Q09666 Q09666 4607 4617 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.0048256 69.721 By MS/MS By matching By MS/MS By MS/MS 2 1 2 4 1.1625 1.2065 20.295 9 Median 0.82109 0.89477 24.969 2 0 Median 1.1625 1.1069 NaN 1 0 Median 1.1549 1.3083 7.8836 2 1 Median 1.2841 1.2521 16.313 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66232000 30398000 35834000 16783000 8615800 8167600 4152100 1688900 2463200 33445000 14749000 18696000 11852000 5344400 6507100 0 0 0 0 0 0 36253 2749 38096 191518;191519;191520;191521;191522;191523;191524;191525;191526 194580;194581;194582;194583;194584;194585 194585 6 VKGDMDVSLPK KISMPDIDLNLKGPKVKGDMDVSLPKVEGD KGPKVKGDMDVSLPKVEGDMKVPDVDIKGP K V K P K V 0 0 0 2 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 2 0 0 11 1 1187.622 Q09666 Q09666 3105 3115 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2;3 0.00078363 94.791 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 0.98558 1.0104 4.4471 7 Median 0.94742 1.0313 NaN 1 0 Median 1.0567 1.0104 NaN 1 0 Median 0.94282 1.0696 5.9844 2 0 Median 0.99069 0.97934 1.6044 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126630000 53173000 73458000 34242000 13609000 20633000 32602000 10543000 22059000 23616000 11608000 12008000 36171000 17413000 18758000 0 0 0 0 0 0 36254 2749 38097;38098 191527;191528;191529;191530;191531;191532;191533;191534;191535 194586;194587;194588;194589;194590;194591;194592;194593;194594;194595 194593 1472 10 VKGDMDVSVPK KISMPDVDLHLKGPKVKGDMDVSVPKVEGE KGPKVKGDMDVSVPKVEGEMKVPDVDIKGP K V K P K V 0 0 0 2 0 0 0 1 0 0 0 2 1 0 1 1 0 0 0 3 0 0 11 1 1173.6064 Q09666 Q09666 1667 1677 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00074299 90.05 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 1 1 0.98033 1.2051 21.042 6 Linear 0.65115 0.67191 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.049 1.1877 NaN 1 0 Median 1.0465 1.0228 0.16672 2 0 Median 0.72305 0.7725 NaN 1 0 Median 0.95353 0.8509 NaN 1 0 Median 46346000 22553000 23794000 1162900 666550 496400 0 0 0 21143000 10042000 11101000 18792000 8989500 9802300 3282600 1835400 1447200 1965800 1019100 946770 36255 2749 38099 191536;191537;191538;191539;191540;191541;191542 194596;194597;194598;194599;194600 194599 5 VKGDMDVSVPKVEGEMK KISMPDVDLHLKGPKVKGDMDVSVPKVEGE GDMDVSVPKVEGEMKVPDVDIKGPKVDIDA K V K M K V 0 0 0 2 0 0 2 2 0 0 0 3 2 0 1 1 0 0 0 4 0 0 17 2 1846.9169 Q09666 Q09666 1667 1683 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3;4 9.9682E-06 53.536 By MS/MS By MS/MS 2 1 0.87826 1.0374 12.469 3 Median 0.85897 1.0146 3.1407 2 0 Median NaN NaN NaN 0 0 Median 1.0107 1.2549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42424000 22048000 20376000 35352000 18636000 16715000 0 0 0 7072900 3412300 3660600 0 0 0 0 0 0 0 0 0 36256 2749 38100 191543;191544;191545 194601;194602;194603 194601 3 VKGDVDISLPK KIPMPDFDLHLKGPKVKGDVDISLPKVEGD KGPKVKGDVDISLPKVEGDLKGPEVDIRGP K V K P K V 0 0 0 2 0 0 0 1 0 1 1 2 0 0 1 1 0 0 0 2 0 0 11 1 1169.6656 Q09666 Q09666 2977 2987 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00093219 105.46 By MS/MS By MS/MS 2 2 0.9089 0.92425 22.803 2 Median 0.77283 0.78662 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0689 1.086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30430000 14544000 15886000 2086400 1025100 1061200 0 0 0 0 0 0 28343000 13519000 14825000 0 0 0 0 0 0 36257 2749 38101 191546;191547;191548;191549 194604;194605;194606 194605 3 VKGDVDVSLPK KISMPDVDLHLKGPKVKGDVDVSLPKLEGD KGPKVKGDVDVSLPKLEGDLTGPSVDVEVP K V K P K L 0 0 0 2 0 0 0 1 0 0 1 2 0 0 1 1 0 0 0 3 0 0 11 1 1155.6499 Q09666 Q09666 2131 2141 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00054341 145.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 2 1 1 1.0087 1.0344 9.386 11 Median 0.96274 1.047 10.937 3 0 Plateau 1.0934 1.051 6.5941 3 0 Median 1.0384 1.1704 NaN 1 0 Median 1.0491 1.0296 0.66087 2 0 Median 0.98111 1.0627 NaN 1 0 Median 0.98896 0.88252 NaN 1 1 Median 575290000 278530000 296750000 89408000 44226000 45183000 141110000 67115000 73994000 199410000 97685000 101720000 111740000 53434000 58306000 16650000 8031800 8618500 16971000 8042200 8929300 36258 2749 38102 191550;191551;191552;191553;191554;191555;191556;191557;191558;191559;191560 194607;194608;194609;194610;194611;194612;194613;194614;194615;194616;194617;194618;194619;194620;194621;194622;194623;194624;194625;194626;194627;194628;194629 194624 23 VKGDVDVSVPK KISMPDVDLHLKGPKVKGDVDVSVPKVEGE KGPKVKGDVDVSVPKVEGEMKVPDVEIKGP K V K P K V 0 0 0 2 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 4 0 0 11 1 1141.6343 Q09666 Q09666 1209 1219 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.00053116 124.42 By matching By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 3 1 1 0.99621 1.0145 8.7588 11 Median 0.98787 1.0443 4.0964 2 0 Median 1.1761 1.1345 10.041 2 0 Median 0.92428 1.0532 7.5585 2 0 Median 1.0118 1.0121 4.1077 3 0 Median 0.85981 0.91538 NaN 1 0 Median 1.0035 0.89548 NaN 1 0 Median 79895000 39052000 40844000 12533000 6248700 6283900 14643000 6852800 7789900 18578000 9595000 8983000 28924000 13606000 15318000 2727600 1560600 1167100 2490600 1188600 1302000 36259 2749 38103 191561;191562;191563;191564;191565;191566;191567;191568;191569;191570;191571 194630;194631;194632;194633;194634;194635 194633 6 VKGDVDVTLPK KISMPDIDLNLKGPKVKGDVDVTLPKVEGD KGPKVKGDVDVTLPKVEGDLKGPEADIKGP K V K P K V 0 0 0 2 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 3 0 0 11 1 1169.6656 Q09666 Q09666 4735 4745 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0017579 93.345 By MS/MS By MS/MS 1 1 0.6386 0.62886 45.454 2 Median NaN NaN NaN 0 0 Median 0.90855 0.86725 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.44885 0.45601 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35452000 26837000 8614300 0 0 0 10382000 6415200 3966600 0 0 0 25070000 20422000 4647700 0 0 0 0 0 0 36260 2749 38104 191572;191573 194636;194637 194637 2 VKGEEIYSMDEGIR QHGINADDKRLQDIRVKGEEIYSMDEGIRT RVKGEEIYSMDEGIRTRSKSAKNPERWTNI R V K I R T 0 1 0 1 0 0 3 2 0 2 0 1 1 0 0 1 0 0 1 1 0 0 14 1 1624.7767 Q96P70 Q96P70 883 896 IPO9 Importin-9 yes yes 2;3 0.0002973 79.693 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 1 1.1218 1.2048 18.326 6 Median 1.0251 1.0683 5.8514 2 0 Median 1.4051 1.3325 NaN 1 0 Median 1.1783 1.3393 NaN 1 0 Median 1.3567 1.3038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95744 0.84761 NaN 1 0 Median 31843000 12714000 19129000 26258000 10686000 15572000 1970900 763290 1207700 2695900 881140 1814800 685370 280910 404460 0 0 0 233260 102900 130360 36261 3711 38105 191574;191575;191576;191577;191578;191579 194638;194639;194640;194641 194640 4 VKGEYDMTVPK KISMPDVDLHMKGPKVKGEYDMTVPKLEGD KGPKVKGEYDMTVPKLEGDLKGPKVDVSAP K V K P K L 0 0 0 1 0 0 1 1 0 0 0 2 1 0 1 0 1 0 1 2 0 0 11 1 1265.6326 Q09666 Q09666 960 970 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.006005 35.523 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 3 1 1 1.0724 1.0898 17.521 8 Median 1.009 1.0979 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1085 1.2645 10.121 2 0 Median 0.96856 0.984 14.367 3 0 Median 1.32 1.3896 NaN 1 0 Median 1.1203 0.99975 NaN 1 0 Median 29515000 13384000 16131000 5449300 2890000 2559300 0 0 0 8987100 3359700 5627400 11776000 5617300 6158800 1714800 789730 925070 1587800 727040 860710 36262 2749 38106 191580;191581;191582;191583;191584;191585;191586;191587;191588 194642;194643;194644;194645;194646;194647;194648;194649 194648 8 VKGEYDVTVPK KISMPDVDLHVKGTKVKGEYDVTVPKLEGE KGTKVKGEYDVTVPKLEGELKGPKVDIDAP K V K P K L 0 0 0 1 0 0 1 1 0 0 0 2 0 0 1 0 1 0 1 3 0 0 11 1 1233.6605 Q09666 Q09666 711 721 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00079719 80.102 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 0.72855 0.76847 14.308 7 Median 0.68801 0.74794 NaN 1 0 Median 0.60016 0.56341 NaN 1 0 Median 0.74383 0.84343 2.9281 2 0 Median 0.75641 0.76847 6.4792 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42788000 23501000 19287000 4854600 2682600 2172000 1153300 706420 446910 20198000 11117000 9080700 16582000 8994800 7587400 0 0 0 0 0 0 36263 2749 38107 191589;191590;191591;191592;191593;191594;191595 194650;194651;194652;194653;194654;194655;194656;194657 194656 8 VKGEYDVTVPKLEGELK KISMPDVDLHVKGTKVKGEYDVTVPKLEGE GEYDVTVPKLEGELKGPKVDIDAPDVDVHG K V K L K G 0 0 0 1 0 0 3 2 0 0 2 3 0 0 1 0 1 0 1 3 0 0 17 2 1903.0302 Q09666 Q09666 711 727 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 4 0.0015744 30.107 By MS/MS By matching 1 1 0.76452 0.92585 5.0476 2 Median 0.75633 0.89339 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77281 0.95949 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4754000 2837400 1916600 2888900 1761600 1127300 0 0 0 1865100 1075800 789300 0 0 0 0 0 0 0 0 0 36264 2749 38108 191596;191597 194658 194658 1 VKGGGHVAQIYAIR LLGKERFAGVDIRVRVKGGGHVAQIYAIRQ RVKGGGHVAQIYAIRQSISKALVAYYQKYV R V K I R Q 2 1 0 0 0 1 0 3 1 2 0 1 0 0 0 0 0 0 1 2 0 0 14 1 1467.831 P62249;M0R210;M0R3H0;M0R1M5;M0QX76 P62249 72 85 RPS16 40S ribosomal protein S16 yes no 2;3 3.0475E-08 120.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 3 2 1.2983 1.204 13.439 16 Median 1.1639 1.1344 2.7968 3 0 Median 1.2465 1.1001 4.2464 4 0 Median 1.357 1.3963 9.0378 2 0 Median 1.4656 1.2974 7.0304 2 0 Median 1.3396 1.5062 21.542 3 1 Median 1.6736 1.3416 9.4381 2 0 Median 245730000 109800000 135930000 130920000 58542000 72382000 70838000 31502000 39336000 27683000 12683000 14999000 8412300 3322500 5089800 6899700 3341000 3558700 977950 413290 564650 36265 2574 38109 191598;191599;191600;191601;191602;191603;191604;191605;191606;191607;191608;191609;191610;191611;191612;191613 194659;194660;194661;194662;194663;194664;194665;194666;194667;194668;194669;194670;194671;194672;194673;194674;194675;194676;194677;194678;194679;194680;194681 194666 23 VKGGVDVTLPR RISMSEVDLNVAAPKVKGGVDVTLPRVEGK AAPKVKGGVDVTLPRVEGKVKVPEVDVRGP K V K P R V 0 1 0 1 0 0 0 2 0 0 1 1 0 0 1 0 1 0 0 3 0 0 11 1 1139.6663 Q09666 Q09666 583 593 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.025188 64.82 By MS/MS 1 1.0909 1.1254 NaN 1 Median 1.0909 1.1254 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6104600 2570800 3533800 6104600 2570800 3533800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36266 2749 38110 191614 194682 194682 1 VKGPFVTWQVVR LLVLCRIASNVLNTKVKGPFVTWQVVRDIL NTKVKGPFVTWQVVRDILHATFEESLDKTS K V K V R D 0 1 0 0 0 1 0 1 0 0 0 1 0 1 1 0 1 1 0 4 0 0 12 1 1414.8085 Q12789;H3BRD0 Q12789 1287 1298 GTF3C1 General transcription factor 3C polypeptide 1 yes no 3 0.00020348 63.408 By MS/MS 1 0.86132 1.0328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86132 1.0328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6255100 3374900 2880200 0 0 0 0 0 0 6255100 3374900 2880200 0 0 0 0 0 0 0 0 0 36267 2758 38111 191615 194683;194684 194684 2 VKGVTIVKPIVYGNVAR MFKRMAEFGPDSGGRVKGVTIVKPIVYGNV GVTIVKPIVYGNVARYFGKKREEDGHTHQW R V K A R Y 1 1 1 0 0 0 0 2 0 2 0 2 0 0 1 0 1 0 1 5 0 0 17 2 1812.0985 O95619;F8W1B9;F8W0J4 O95619 16 32 YEATS4 YEATS domain-containing protein 4 yes no 3 0.014809 21.841 By MS/MS 1 0.80829 0.95429 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80829 0.95429 NaN 1 0 Median NaN NaN NaN 0 0 Median 4749600 2809200 1940300 0 0 0 0 0 0 0 0 0 0 0 0 4749600 2809200 1940300 0 0 0 36268 1783 38112 191616 194685 194685 1 VKHEVSGETVVFQGGALGK ELVSTLVETLMTGKRVKHEVSGETVVFQGG VSGETVVFQGGALGKTPDGQGLSTYKELCS R V K G K T 1 0 0 0 0 1 2 4 1 0 1 2 0 1 0 1 1 0 0 4 0 0 19 1 1941.032 Q5VYK3;J3KN16 Q5VYK3 1038 1056 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3;4 1.1378E-21 117.26 By MS/MS By MS/MS 2 3 1.0705 1.0217 8.7233 5 Median 1.0824 1.0264 0.64343 2 0 Median 1.0209 0.97816 12.271 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71648000 33423000 38226000 47127000 21385000 25742000 24521000 12037000 12484000 0 0 0 0 0 0 0 0 0 0 0 0 36269 3116 38113 191617;191618;191619;191620;191621 194686;194687;194688;194689;194690;194691;194692 194692 7 VKIHEATGMPAGK LVFTLPLTDQVSVIKVKIHEATGMPAGKQK IKVKIHEATGMPAGKQKLQYEGIFIKDSNS K V K G K Q 2 0 0 0 0 0 1 2 1 1 0 2 1 0 1 0 1 0 0 1 0 0 13 1 1337.7126 Q15459 Q15459 742 754 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.0090338 26.969 By matching By MS/MS By matching 1 1 1 1.024 1.021 9.8622 3 Median 0.88546 0.94164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.024 1.1458 NaN 1 0 Median 1.1226 1.021 NaN 1 0 Median 2784100 1398100 1386000 394310 217460 176850 0 0 0 0 0 0 0 0 0 2066900 1044000 1022800 322900 136610 186290 36270 2954 38114 191622;191623;191624 194693 194693 1 VKIPEGTILTMDMLTVK EMACNEKLGKSVVAKVKIPEGTILTMDMLT IPEGTILTMDMLTVKVGEPKGYPPEDIFNL K V K V K V 0 0 0 1 0 0 1 1 0 2 2 2 2 0 1 0 3 0 0 2 0 0 17 1 1888.0413 Q9NR45 Q9NR45 299 315 NANS Sialic acid synthase yes yes 2 0.0021011 43.084 By matching By MS/MS 1 1 0.75616 0.69703 5.6677 2 Median 0.77525 0.72553 NaN 1 0 Median 0.73754 0.66965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2035900 1063600 972290 829800 433570 396230 1206100 630010 576060 0 0 0 0 0 0 0 0 0 0 0 0 36271 4079 38115 191625;191626 194694;194695 194695 2 VKLDSPAGTALSPSGHTK EQVSPAAIKKTILDKVKLDSPAGTALSPSG DSPAGTALSPSGHTKLLPRSLAPAGKD___ K V K T K L 2 0 0 1 0 0 0 2 1 0 2 2 0 0 2 3 2 0 0 1 0 0 18 1 1764.937 P32322;E2QRB3 P32322 290 307 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes no 3;4 1.0269E-06 79.837 By MS/MS By matching By MS/MS 2 1 2 1.2687 1.1435 39.034 5 Median 0.62894 0.61232 17.329 2 0 Median 1.2687 1.1435 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4378 1.2625 2.4438 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26273000 14406000 11867000 19880000 11721000 8159500 1317000 776790 540170 0 0 0 5075700 1908200 3167600 0 0 0 0 0 0 36272 2218 38116 191627;191628;191629;191630;191631 194696;194697;194698;194699 194697 3 VKLEAEIATYR GQRQAQEYEALLNIKVKLEAEIATYRRLLE LNIKVKLEAEIATYRRLLEDGEDFNLGDAL K V K Y R R 2 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1291.7136 CON__P05784;P05783;F8VZY9 P05783 371 381 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 4.5653E-05 140.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 4 9 7 1.3591 1.2471 59.954 31 Median 1.3698 1.4131 26.23 4 0 Median 2.3532 2.198 155.37 4 0 Linear 1.1539 1.237 44.023 4 0 Median 1.2764 1.1555 6.7735 4 0 Median 1.4118 1.4764 19.919 8 0 Median 1.2982 1.1432 8.4463 7 0 Median 2127600000 943240000 1184400000 276790000 122650000 154140000 60989000 27398000 33591000 638470000 289740000 348730000 546450000 246970000 299480000 326890000 133170000 193710000 278020000 123320000 154700000 + 36273 1869;749 38117 191632;191633;191634;191635;191636;191637;191638;191639;191640;191641;191642;191643;191644;191645;191646;191647;191648;191649;191650;191651;191652;191653;191654;191655;191656;191657;191658;191659;191660;191661;191662;191663;191664 194700;194701;194702;194703;194704;194705;194706;194707;194708;194709;194710;194711;194712;194713;194714;194715;194716;194717;194718;194719;194720;194721;194722;194723;194724;194725;194726;194727;194728;194729;194730;194731;194732;194733;194734;194735;194736;194737;194738;194739;194740;194741;194742;194743;194744;194745;194746;194747;194748;194749;194750;194751;194752;194753;194754;194755;194756;194757;194758;194759;194760;194761;194762;194763;194764;194765;194766;194767;194768;194769;194770;194771;194772;194773;194774;194775;194776;194777;194778;194779 194760 80 VKLEAEIATYRR GQRQAQEYEALLNIKVKLEAEIATYRRLLE NIKVKLEAEIATYRRLLEDGEDFNLGDALD K V K R R L 2 2 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 12 2 1447.8147 CON__P05784;P05783;F8VZY9 P05783 371 382 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 1.3234E-06 155.97 By MS/MS By MS/MS By MS/MS 3 6 3 1.1184 1.214 24.527 12 Median 1.2931 1.4419 1.2117 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1022 1.214 22.364 6 0 Median 0.97246 0.84368 9.8913 3 0 Median 344990000 154830000 190160000 34579000 13153000 21427000 0 0 0 0 0 0 0 0 0 164740000 74704000 90038000 145660000 66973000 78691000 + 36274 1869;749 38118 191665;191666;191667;191668;191669;191670;191671;191672;191673;191674;191675;191676 194780;194781;194782;194783;194784;194785;194786;194787;194788;194789;194790 194784 11 VKLEEQLKETVEK KADPPATEKTLLEEKVKLEEQLKETVEKYK EKVKLEEQLKETVEKYKRALADTENLRQRS K V K E K Y 0 0 0 0 0 1 4 0 0 0 2 3 0 0 0 0 1 0 0 2 0 0 13 2 1571.877 Q9HAV7 Q9HAV7 65 77 GRPEL1 GrpE protein homolog 1, mitochondrial yes yes 2;3 2.6861E-06 140.08 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.2497 1.3198 26.65 7 Median 1.2612 1.332 1.3019 2 0 Median 1.4477 1.4166 3.8729 2 0 Median 0.85995 0.9703 NaN 1 0 Median 0.98367 0.90448 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77551 0.72613 NaN 1 0 Median 119050000 49670000 69384000 73322000 31314000 42008000 38327000 14688000 23639000 3434200 1775400 1658800 3338800 1615300 1723500 0 0 0 631860 276820 355040 36275 4013 38119 191677;191678;191679;191680;191681;191682;191683 194791;194792;194793;194794;194795;194796;194797;194798;194799 194794 9 VKLESPTVSTLTPSSPGK EKISPAALKKTLLDRVKLESPTVSTLTPSS ESPTVSTLTPSSPGKLLTRSLALGGKKD__ R V K G K L 0 0 0 0 0 0 1 1 0 0 2 2 0 0 3 4 3 0 0 2 0 0 18 1 1826.9989 Q96C36;A0A087WTV6;A0A087WZR9 Q96C36 290 307 PYCR2 Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase yes no 2;3 1.7419E-11 101.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 1.0156 0.89004 33.008 10 Median 0.59908 0.58054 4.3166 2 0 Median 0.93851 0.84539 7.27 2 0 Median 0.93749 0.98077 20.052 2 0 Median 1.1683 1.0258 12.426 2 0 Median 1.7061 1.7963 NaN 1 0 Median 1.0435 0.8901 NaN 1 0 Median 110860000 62698000 48161000 68388000 41273000 27115000 14277000 7113200 7163500 13916000 7344100 6571900 11427000 5482200 5945000 1759300 912940 846410 1091900 573040 518810 36276 3615 38120 191684;191685;191686;191687;191688;191689;191690;191691;191692;191693 194800;194801;194802;194803;194804;194805;194806;194807;194808;194809;194810;194811;194812 194811 13 VKLFTAHNNMTNYATVWASK TINDVVYVIDSCKQKVKLFTAHNNMTNYAT AHNNMTNYATVWASKTNLEQRKGRAGRVRP K V K S K T 3 0 3 0 0 0 0 0 1 0 1 2 1 1 0 1 3 1 1 2 0 0 20 1 2295.147 Q08211 Q08211 736 755 DHX9 ATP-dependent RNA helicase A yes yes 3 0.00013492 36.805 By MS/MS 1 1.265 1.4619 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.265 1.4619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10164000 4447000 5717300 0 0 0 0 0 0 10164000 4447000 5717300 0 0 0 0 0 0 0 0 0 36277 2736 38121 191694 194813;194814 194813 2 VKLGHTDILVGVK EVETDVVSNTSGSARVKLGHTDILVGVKAE ARVKLGHTDILVGVKAEMGTPKLEKPNEGY R V K V K A 0 0 0 1 0 0 0 2 1 1 2 2 0 0 0 0 1 0 0 3 0 0 13 1 1377.8344 Q15024 Q15024 51 63 EXOSC7 Exosome complex component RRP42 yes yes 3 0.0031634 36.284 By matching By matching By MS/MS By matching 1 1 1 1 1.2334 1.1567 25.319 4 Median 1.3266 1.2944 NaN 1 0 Median 1.1468 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1256 0.98837 NaN 1 0 Median 1.6442 1.7179 NaN 1 0 Median NaN NaN NaN 0 0 Median 8786000 4004800 4781200 5376100 2501400 2874700 966180 445170 521010 0 0 0 1748700 836910 911760 695020 221300 473730 0 0 0 36278 2916 38122 191695;191696;191697;191698 194815 194815 1 VKLLLQVQHASK IAAAISKTAVAPIERVKLLLQVQHASKQIA IERVKLLLQVQHASKQIAADKQYKGIVDCI R V K S K Q 1 0 0 0 0 2 0 0 1 0 3 2 0 0 0 1 0 0 0 2 0 0 12 1 1362.8347 P05141;P12235;V9GYG0;P12236 P12236 32 43 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2;3 1.8405E-07 123.96 By MS/MS By MS/MS By matching By matching By MS/MS 6 5 1 1 2 1.4453 1.432 21.052 13 Median 1.0851 1.0872 12.141 5 0 Median 1.5964 1.4545 3.82 4 0 Median 1.3744 1.447 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5197 1.6189 NaN 1 0 Median 1.9211 1.6395 10.884 2 0 Median 125720000 53795000 71924000 65856000 30614000 35242000 51921000 20495000 31426000 1068800 437970 630820 0 0 0 5053300 1616900 3436400 1819400 631410 1187900 36279 1977;1861;1976 38123 191699;191700;191701;191702;191703;191704;191705;191706;191707;191708;191709;191710;191711;191712;191713 194816;194817;194818;194819;194820;194821;194822;194823;194824;194825;194826;194827;194828;194829;194830 194827 15 VKLQDGVHIIK ALEKNPDEFYYKMTRVKLQDGVHIIKETKE KMTRVKLQDGVHIIKETKEEVTPEQLKLMR R V K I K E 0 0 0 1 0 1 0 1 1 2 1 2 0 0 0 0 0 0 0 2 0 0 11 1 1248.7554 Q9Y3A2 Q9Y3A2 73 83 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 3 0.05645 16.093 By MS/MS By matching 1 1 1.2685 1.2044 18.373 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2995 1.3715 NaN 1 0 Median 1.2383 1.0577 NaN 1 0 Median 7671400 2888800 4782600 0 0 0 0 0 0 0 0 0 0 0 0 7095500 2678700 4416700 575920 210080 365830 36280 4410 38124 191714;191715 194831 194831 1 VKLQEMEGTVK ENARQQLERQNKELKVKLQEMEGTVKSKYK KELKVKLQEMEGTVKSKYKASITALEAKIA K V K V K S 0 0 0 0 0 1 2 1 0 0 1 2 1 0 0 0 1 0 0 2 0 0 11 1 1260.6748 P35579 P35579 1792 1802 MYH9 Myosin-9 yes yes 2;3 5.6447E-05 116.52 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 3 2 3 1 2 1 1.1812 1.1679 15.018 12 Median 1.2717 1.2059 5.5689 3 2 Median 1.231 1.1882 6.9772 2 0 Median 0.90105 1.0362 20.487 3 0 Median 1.5699 1.3785 NaN 1 0 Median 1.1512 1.2314 20.852 2 0 Median 1.1574 1.0329 NaN 1 0 Median 111130000 50260000 60868000 80535000 35018000 45516000 8284900 3644000 4640900 12564000 6955400 5608900 1324500 523930 800540 7488700 3686100 3802600 930080 431780 498300 36281 2244 38125 191716;191717;191718;191719;191720;191721;191722;191723;191724;191725;191726;191727 194832;194833;194834;194835;194836;194837;194838;194839;194840;194841;194842;194843 194832 11 VKLQIWDTAGQER GVDFKIRTVEINGEKVKLQIWDTAGQERFR EKVKLQIWDTAGQERFRTITSTYYRGTHGV K V K E R F 1 1 0 1 0 2 1 1 0 1 1 1 0 0 0 0 1 1 0 1 0 0 13 1 1542.8154 Q15286;F5H157;E9PI18;C9JFM7;E9PJQ5;E9PRF7;E9PNB9;E9PS06;E9PMJ1;A8MSP2;A8MTC6;A8MZI4;B7Z3L0;Q15771;Q86YS6;Q96AX2 Q15286 57 69 RAB35;RAB30;RAB43;RAB37 Ras-related protein Rab-35;Ras-related protein Rab-30;Ras-related protein Rab-43;Ras-related protein Rab-37 no no 3 0.005306 32.734 By MS/MS By matching By matching 1 1 1 1.1492 1.1899 36.299 3 Plateau 1.1817 1.2343 NaN 1 0 Median 0.86711 0.81038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69839 0.59918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14603000 4158000 10446000 12586000 2904000 9681800 1853000 1144600 708410 0 0 0 164670 109360 55306 0 0 0 0 0 0 36282 2938 38126 191728;191729;191730 194844 194844 1 VKLTAELIEQAAQYTNAVR ______________________________ AELIEQAAQYTNAVRDRELDLRGYKIPVIE M V K V R D 4 1 1 0 0 2 2 0 0 1 2 1 0 0 0 0 2 0 1 2 0 0 19 1 2117.1481 P09661;H0YKK0 P09661 2 20 SNRPA1 U2 small nuclear ribonucleoprotein A yes no 3 1.5635E-05 47.752 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.177 1.2494 19.293 4 Median 1.2336 1.299 NaN 1 0 Median 1.3725 1.3 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.123 1.2017 NaN 1 0 Median 0.97683 0.86689 NaN 1 0 Median 6212900 2841800 3371100 2670200 1183000 1487200 367930 136320 231600 0 0 0 0 0 0 503300 206930 296370 2671500 1315500 1355900 36283 1920 38127 191731;191732;191733;191734 194845;194846;194847;194848 194847 4 VKMPDVDISVPK AIHVEGLDIKAKAPKVKMPDVDISVPKIEG APKVKMPDVDISVPKIEGDLKGPKVQANLG K V K P K I 0 0 0 2 0 0 0 0 0 1 0 2 1 0 2 1 0 0 0 3 0 0 12 1 1326.7217 Q09666 Q09666 5143 5154 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0098843 27.967 By MS/MS 1 1.2006 1.3614 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2006 1.3614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9751400 4231900 5519500 0 0 0 0 0 0 9751400 4231900 5519500 0 0 0 0 0 0 0 0 0 36284 2749 38128 191735 194849 194849 1 VKNFAQLTVSGSR LNASDERGIQVVREKVKNFAQLTVSGSRSD EKVKNFAQLTVSGSRSDGKPCPPFKIVILD K V K S R S 1 1 1 0 0 1 0 1 0 0 1 1 0 1 0 2 1 0 0 2 0 0 13 1 1405.7678 P35249;C9JZI1;C9J8M3;C9JTT7 P35249 123 135 RFC4 Replication factor C subunit 4 yes no 2;3 0.00015098 72.659 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1117 1.1911 12.547 5 Median 1.0575 1.1331 7.0638 2 0 Median NaN NaN NaN 0 0 Median 1.0195 1.1098 NaN 1 0 Median 1.3999 1.2224 NaN 1 0 Median 1.3711 1.4844 NaN 1 0 Median NaN NaN NaN 0 0 Median 30533000 13740000 16793000 19442000 9010400 10431000 0 0 0 4526200 2405200 2120900 2804900 1079500 1725400 3760300 1244600 2515700 0 0 0 36285 2237 38129 191736;191737;191738;191739;191740 194850;194851;194852;194853;194854;194855;194856;194857;194858 194851 9 VKNFGIWLR EIVYCGQVFEKSPLRVKNFGIWLRYDSRSG EKSPLRVKNFGIWLRYDSRSGTHNMYREYR R V K L R Y 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 9 1 1131.6553 M0R3D6;M0R1A7;Q02543;M0R117;M0R0P7 M0R3D6 46 54 RPL18A 60S ribosomal protein L18a yes no 2 0.0026274 114.78 By MS/MS By matching By MS/MS By matching By MS/MS 1 3 1 1 2 1.3921 1.3301 8.7832 8 Median 1.3283 1.3806 NaN 1 0 Median 1.4248 1.3286 3.5018 3 0 Median 1.5602 1.6262 NaN 1 0 Median 1.3622 1.2058 NaN 1 0 Median 1.2095 1.3248 0.72192 2 0 Median NaN NaN NaN 0 0 Median 115960000 50289000 65671000 50700000 20106000 30594000 3513200 1405500 2107700 8645200 4353300 4291900 5046400 2135200 2911200 48055000 22290000 25766000 0 0 0 36286 1433 38130 191741;191742;191743;191744;191745;191746;191747;191748 194859;194860;194861;194862;194863;194864;194865 194863 7 VKNPEDLSAETMAK CRIVALDLRSHGETKVKNPEDLSAETMAKD KVKNPEDLSAETMAKDVGNVVEAMYGDLPP K V K A K D 2 0 1 1 0 0 2 0 0 0 1 2 1 0 1 1 1 0 0 1 0 0 14 1 1531.7552 Q9Y570 Q9Y570 120 133 PPME1 Protein phosphatase methylesterase 1 yes yes 2;3 4.9315E-05 90.146 By MS/MS By MS/MS By MS/MS 2 2 1 0.86429 0.7807 17.88 5 Median 0.84267 0.78542 10.718 2 0 Median 0.80191 0.72533 10.403 2 0 Median 0.98505 1.0734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25520000 12787000 12733000 13030000 6474900 6554900 7852700 3832500 4020200 4637500 2479800 2157700 0 0 0 0 0 0 0 0 0 36287 4453 38131 191749;191750;191751;191752;191753 194866;194867;194868;194869;194870;194871;194872;194873;194874 194868 9 VKPAPDETSFSEALLK ______________________________ KPAPDETSFSEALLKRNQDLAPNSAEQASI R V K L K R 2 0 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 16 1 1730.9091 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 6 21 ILF2 Interleukin enhancer-binding factor 2 yes no 2;3 6.3346E-06 90.926 By MS/MS By MS/MS By MS/MS By matching 7 4 5 6 0.75553 0.75656 19.695 22 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67499 0.7308 18.087 7 0 Median 0.98492 0.87703 32.816 4 0 Median 0.71372 0.76223 21.494 5 2 Median 0.88294 0.76638 4.3189 6 0 Median 820370000 468600000 351780000 0 0 0 0 0 0 656750000 376110000 280630000 11035000 5424800 5610000 135550000 78130000 57419000 17044000 8929100 8114800 36288 609 38132 191754;191755;191756;191757;191758;191759;191760;191761;191762;191763;191764;191765;191766;191767;191768;191769;191770;191771;191772;191773;191774;191775 194875;194876;194877;194878;194879;194880;194881;194882;194883;194884;194885;194886;194887;194888;194889;194890;194891;194892;194893;194894;194895;194896;194897 194886 23 VKPAPDETSFSEALLKR ______________________________ PAPDETSFSEALLKRNQDLAPNSAEQASIL R V K K R N 2 1 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 17 2 1887.0102 B4DY09;Q12905;X6R6Z1;A0A0A0MRL0 B4DY09 6 22 ILF2 Interleukin enhancer-binding factor 2 yes no 3;4 4.3382E-11 105.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 7 4 0.76433 0.81544 18.825 17 Median 0.75872 0.8033 37.802 2 1 Median NaN NaN NaN 0 0 Median 0.76755 0.86053 0.59547 2 0 Median 0.79736 0.83326 23.013 2 0 Median 0.71097 0.81329 17.576 7 2 Median 0.86607 0.75465 23.042 4 0 Median 373020000 209210000 163810000 17391000 10304000 7087300 0 0 0 155680000 86264000 69417000 6504200 3330200 3174000 180010000 102570000 77435000 13435000 6736300 6698300 36289 609 38133 191776;191777;191778;191779;191780;191781;191782;191783;191784;191785;191786;191787;191788;191789;191790;191791;191792 194898;194899;194900;194901;194902;194903;194904;194905;194906;194907;194908;194909;194910;194911;194912;194913;194914;194915;194916;194917 194900 20 VKPDVVQDKETER IKQRDKRLEWEMMCRVKPDVVQDKETERNL CRVKPDVVQDKETERNLQRIATRGVVQLFN R V K E R N 0 1 0 2 0 1 2 0 0 0 0 2 0 0 1 0 1 0 0 3 0 0 13 2 1541.8049 Q9Y3B9 Q9Y3B9 148 160 RRP15 RRP15-like protein yes yes 2;3 0.00030652 62.042 By MS/MS By matching 3 1 0.95107 1.0596 7.8731 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93836 1.0937 9.6147 3 0 Median 1.134 1.0266 NaN 1 0 Median 6731900 3266700 3465200 0 0 0 0 0 0 0 0 0 0 0 0 6446400 3156500 3289900 285460 110150 175310 36290 4417 38134 191793;191794;191795;191796 194918;194919;194920;194921 194920 4 VKPEEMMDERPK PILKEFKEEGEEIPRVKPEEMMDERPKTRS IPRVKPEEMMDERPKTRSQEQEVLERGGRF R V K P K T 0 1 0 1 0 0 3 0 0 0 0 2 2 0 2 0 0 0 0 1 0 0 12 2 1487.7112 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 256 267 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 3 0.0015532 42.789 By MS/MS By MS/MS 1 1 0.74512 0.81831 13.424 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76539 0.89979 NaN 1 0 Median 0.72538 0.74421 NaN 1 0 Median 7003900 3693000 3310900 0 0 0 0 0 0 0 0 0 0 0 0 6132500 3207300 2925200 871360 485750 385610 36291 4560 38135 191797;191798 194922;194923 194922 2 VKPFMTGAAEQIK MKSIKGKLEEQRPERVKPFMTGAAEQIKHI ERVKPFMTGAAEQIKHILANFKNYQFFIGE R V K I K H 2 0 0 0 0 1 1 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 13 1 1418.7592 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7;Q56UQ5 Q5W0H4 111 123 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 2;3 1.0978E-05 97.734 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 7 5 4 4 2 0.97211 0.8853 53.097 27 Median 1.087 1.0941 3.9333 5 1 Median 0.88998 0.78721 79.386 7 0 Median 1.0557 1.0444 14.266 5 0 Median 0.92659 0.83579 2.6635 4 0 Median 1.5077 1.6704 45.74 4 0 Linear 1.0994 0.95415 38.624 2 0 Median 1042200000 508930000 533320000 392310000 193260000 199050000 68132000 36368000 31764000 436590000 205560000 231030000 131620000 67256000 64363000 10503000 5212000 5290800 3092700 1267400 1825300 36292 222 38136;38137 191799;191800;191801;191802;191803;191804;191805;191806;191807;191808;191809;191810;191811;191812;191813;191814;191815;191816;191817;191818;191819;191820;191821;191822;191823;191824;191825 194924;194925;194926;194927;194928;194929;194930;194931;194932;194933;194934;194935;194936;194937;194938;194939;194940;194941;194942;194943;194944;194945;194946;194947;194948;194949;194950;194951;194952;194953;194954 194933 94 31 VKPLLQVSR YLKLRNWQWWRLFTKVKPLLQVSRQEEEMM WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K V K S R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 9 1 1038.655 P35579 P35579 834 842 MYH9 Myosin-9 yes yes 2 0.0031817 105.57 By MS/MS By MS/MS By matching By matching By MS/MS By MS/MS 1 2 1 1 1 1 1.0117 0.98694 12.217 7 Median 1.0547 1.0545 NaN 1 0 Median 0.99777 0.92708 8.8496 2 0 Median 0.79336 0.95145 NaN 1 0 Median 1.1748 1.1341 NaN 1 0 Median 1.0117 1.1503 NaN 1 0 Median 0.94683 0.84107 NaN 1 0 Median 132810000 68042000 64771000 26007000 13203000 12804000 62486000 32545000 29942000 5100200 2827800 2272400 860700 433260 427440 16008000 7637600 8370800 22351000 11395000 10955000 36293 2244 38138 191826;191827;191828;191829;191830;191831;191832 194955;194956;194957;194958;194959;194960 194955 6 VKPLLQVTR YLKLRHWQWWRVFTKVKPLLQVTRQEEELQ WRVFTKVKPLLQVTRQEEELQAKDEELLKV K V K T R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 2 0 0 9 1 1052.6706 Q7Z406;P35580 P35580 841 849 MYH14;MYH10 Myosin-14;Myosin-10 no no 2 0.015469 66.27 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1 1.1203 1.0627 30.999 7 Median 0.94844 0.95266 NaN 1 0 Median 1.1667 1.0983 4.6599 2 0 Median 0.57254 0.68661 NaN 1 0 Median 1.5705 1.5161 NaN 1 0 Median 0.5617 0.63735 NaN 1 0 Median 1.3675 1.2147 NaN 1 0 Median 52517000 27813000 24704000 11704000 6358900 5345600 19678000 8814600 10863000 5335600 3591100 1744400 548030 207550 340480 9884600 6425400 3459200 5367200 2415600 2951500 36294 2245;3242 38139 191833;191834;191835;191836;191837;191838;191839 194961;194962;194963;194964;194965;194966 194966 6 VKPLQDQNELFGK YLEMLLEYLQDYTDRVKPLQDQNELFGKIQ DRVKPLQDQNELFGKIQAEFEKKWENGTFP R V K G K I 0 0 1 1 0 2 1 1 0 0 2 2 0 1 1 0 0 0 0 1 0 0 13 1 1514.8093 Q12874 Q12874 200 212 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 9.0091E-06 96.015 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 4 4 4 3 0.9005 0.91824 25.892 20 Median 0.97438 0.90756 11.209 3 2 Plateau 0.99762 0.93373 1.7545 2 0 Median 0.89397 0.92927 48.113 4 0 Median 0.9693 0.93121 11.468 4 0 Median 0.8749 0.93489 15.025 4 0 Median 0.89741 0.79982 21.199 3 0 Median 435810000 221510000 214300000 103140000 52529000 50614000 17499000 8881300 8617400 101210000 51037000 50171000 54708000 27527000 27181000 143790000 73605000 70181000 15465000 7933800 7530900 36295 2767 38140 191840;191841;191842;191843;191844;191845;191846;191847;191848;191849;191850;191851;191852;191853;191854;191855;191856;191857;191858;191859 194967;194968;194969;194970;194971;194972;194973;194974;194975;194976;194977;194978;194979;194980;194981;194982;194983;194984;194985;194986;194987;194988;194989;194990 194983 24 VKPPVRNPQNSTVLAR VVTAAAQAKQRSPSKVKPPVRNPQNSTVLA KPPVRNPQNSTVLARGPASVPSVGKAVATA K V K A R G 1 2 2 0 0 1 0 0 0 0 1 1 0 0 3 1 1 0 0 3 0 0 16 2 1775.0166 E7ETY2;A0A3B3IS06;H0Y8Y7;Q13428 Q13428 827 842 TCOF1 Treacle protein no no 3;4 0.00082279 36.638 By MS/MS 3 0.56716 0.68155 31.299 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56716 0.68155 31.299 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10919000 6739400 4179500 0 0 0 0 0 0 10919000 6739400 4179500 0 0 0 0 0 0 0 0 0 36296 2816;891 38141 191860;191861;191862 194991;194992;194993;194994;194995;194996 194995 6 VKPWNYTYDPK KVFGASAKVVHFLGRVKPWNYTYDPKTKSV FLGRVKPWNYTYDPKTKSVKSEAHDPNMTH R V K P K T 0 0 1 1 0 0 0 0 0 0 0 2 0 0 2 0 1 1 2 1 0 0 11 1 1409.698 P46976;C9JQ42 P46976 217 227 GYG1 Glycogenin-1 yes no 2;3 0.0029149 66.056 By matching By MS/MS By matching 1 3 1 0.84636 0.82965 47.202 5 Median 0.29653 0.30002 NaN 1 0 Median 0.86794 0.82965 8.2729 3 0 Median 0.81059 0.86992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38951000 20087000 18865000 2427700 1872300 555360 33697000 17076000 16621000 2826500 1138400 1688100 0 0 0 0 0 0 0 0 0 36297 2351 38142 191863;191864;191865;191866;191867 194997;194998;194999 194998 3 VKQELLEEVKK QPCTPSSSDYSDLQRVKQELLEEVKKELQK DLQRVKQELLEEVKKELQKVKEEIIEAFVQ R V K K K E 0 0 0 0 0 1 3 0 0 0 2 3 0 0 0 0 0 0 0 2 0 0 11 2 1341.7868 P50552 P50552 347 357 VASP Vasodilator-stimulated phosphoprotein yes yes 3 0.00081367 53.237 By MS/MS By matching By matching 1 1 1 0.9835 1.0234 3.5389 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85016 0.9972 NaN 1 0 Median 1.0757 1.034 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9835 0.96332 NaN 1 0 Median 9547700 4922500 4625200 0 0 0 0 0 0 3522000 1959800 1562300 5300100 2628000 2672100 0 0 0 725510 334750 390770 36298 2416 38143 191868;191869;191870 195000;195001 195000 2 VKTDTVLILCR NNLLKPISVEGSSKKVKTDTVLILCRKKVE SSKKVKTDTVLILCRKKVENTRWDYLTQVE K V K C R K 0 1 0 1 1 0 0 0 0 1 2 1 0 0 0 0 2 0 0 2 0 0 11 1 1316.7486 Q9HB71 Q9HB71 145 155 CACYBP Calcyclin-binding protein yes yes 3 0.058615 15.539 By MS/MS By matching 1 1 1.2684 1.2027 1.9231 2 Median NaN NaN NaN 0 0 Median 1.3018 1.2191 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2358 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4686800 1487900 3198900 0 0 0 1367500 558410 809070 0 0 0 3319300 929510 2389800 0 0 0 0 0 0 36299 4016 38144 191871;191872 195002 195002 1 VKTPEMIIQKPK EIATGGLEGKMKGTKVKTPEMIIQKPKISM GTKVKTPEMIIQKPKISMQDVDLSLGSPKL K V K P K I 0 0 0 0 0 1 1 0 0 2 0 3 1 0 2 0 1 0 0 1 0 0 12 2 1410.8269 Q09666 Q09666 488 499 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.0002036 66.498 By MS/MS By MS/MS By MS/MS 2 1 2 0.96364 1.1039 11.866 5 Median 1.0175 1.1571 22.566 2 0 Median NaN NaN NaN 0 0 Median 0.96364 1.1964 NaN 1 0 Median 0.99511 1.0997 0.54516 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16901000 8798600 8102700 9337600 5003900 4333700 0 0 0 4515800 2189600 2326100 3047900 1605100 1442800 0 0 0 0 0 0 36300 2749 38145 191873;191874;191875;191876;191877 195003;195004;195005;195006;195007;195008;195009 195005 7 VKTSEDADELHK IDEKNATMPVTMLIRVKTSEDADELHKILL LIRVKTSEDADELHKILLEKKDA_______ R V K H K I 1 0 0 2 0 0 2 0 1 0 1 2 0 0 0 1 1 0 0 1 0 0 12 1 1370.6678 Q9UKX7 Q9UKX7 449 460 NUP50 Nuclear pore complex protein Nup50 yes yes 3 0.053081 16.35 By matching By matching By MS/MS 2 1 1 0.99574 1.02 8.6104 4 Median 1.0592 1.0316 4.126 2 0 Median NaN NaN NaN 0 0 Median 0.82672 0.87629 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97323 1.0385 NaN 1 0 Median NaN NaN NaN 0 0 Median 2384200 1189200 1195000 461290 227510 233770 0 0 0 280940 151790 129160 0 0 0 1642000 809900 832100 0 0 0 36301 4317 38146 191878;191879;191880;191881 195010 195010 1 VKVDEVGGEALGR LSAEEKAAVTSLFAKVKVDEVGGEALGRLL AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V K G R L 1 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 3 0 0 13 1 1327.7096 CON__Q3SX09;CON__P02070 CON__Q3SX09 73 85 yes no 2;3 4.9834E-11 140.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 1 0.033647 0.038044 38.825 4 Median NaN NaN NaN 0 0 Median 0.027424 0.024213 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.04424 0.05032 29.065 3 3 Plateau NaN NaN NaN 0 0 Median 115810000 113480000 2329900 1860000 1860000 0 18079000 17671000 408550 57476000 57476000 0 2844500 2844500 0 32802000 30881000 1921400 2744700 2744700 0 + 36302 777 38147 191882;191883;191884;191885;191886;191887;191888;191889;191890;191891 195011;195012;195013;195014;195015;195016;195017;195018;195019;195020 195013 10 VKVEHVVSVLEK QTLTHIYNKVRTGEKVKVEHVVSVLEKKYP GEKVKVEHVVSVLEKKYPYVEVNSILGIDS K V K E K K 0 0 0 0 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 5 0 0 12 1 1364.8028 Q9NYU2 Q9NYU2 584 595 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2;3 6.3912E-06 160.52 By MS/MS By MS/MS 3 2 1.0965 1.0379 24.665 5 Median 1.0548 0.99449 2.5838 3 0 Median 1.6382 1.578 2.0471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74922000 32480000 42442000 59165000 26348000 32817000 15756000 6131500 9624800 0 0 0 0 0 0 0 0 0 0 0 0 36303 4179 38148 191892;191893;191894;191895;191896 195021;195022;195023;195024;195025;195026 195025 6 VKVEPAVDTSR TMKYGGELVPHFPARVKVEPAVDTSRIKVF FPARVKVEPAVDTSRIKVFGPGIEGKDVFR R V K S R I 1 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 3 0 0 11 1 1199.651 O75369;E7EN95 O75369 1220 1230 FLNB Filamin-B yes no 2;3 0.00033294 94.692 By MS/MS By MS/MS By matching By matching By matching 4 4 1 2 1 0.92992 0.90506 64.278 12 Median 0.82699 0.84454 11.749 4 0 Median 0.94104 0.88827 13.474 4 0 Median 0.70163 0.83299 NaN 1 0 Median 2.2847 2.0192 54.128 2 0 Median 5.8801 6.165 NaN 1 0 Median NaN NaN NaN 0 0 Median 28870000 13092000 15778000 6229400 3363800 2865600 15394000 7798100 7595700 973520 526250 447280 1318400 248420 1070000 4955000 1155200 3799800 0 0 0 36304 1664 38149 191897;191898;191899;191900;191901;191902;191903;191904;191905;191906;191907;191908 195027;195028;195029;195030;195031;195032;195033;195034;195035;195036;195037 195032 11 VKVEPIPAIGHATLGTASR PKAEAQENGDHREVKVKVEPIPAIGHATLG PIPAIGHATLGTASRIIQTAQTTPVQTVTI K V K S R I 3 1 0 0 0 0 1 2 1 2 1 1 0 0 2 1 2 0 0 2 0 0 19 1 1916.0843 Q01167;I3L4U8 Q01167 526 544 FOXK2 Forkhead box protein K2 yes no 3 1.2397E-06 51.487 By MS/MS By MS/MS 1 1 0.87013 0.87359 4.6901 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79486 0.84509 NaN 1 0 Median 0.95252 0.90304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19194000 10189000 9004100 0 0 0 0 0 0 17232000 9222200 8010000 1961400 967260 994100 0 0 0 0 0 0 36305 2684 38150 191909;191910 195038;195039 195038 2 VKVETYNDESR VFQNANFRSFIFRVRVKVETYNDESRIKAT FRVRVKVETYNDESRIKATVMDVKPVDYRE R V K S R I 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 11 1 1338.6416 P27694;I3L4R8 P27694 576 586 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 2;3 0.00026932 81.338 By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1.0546 1.0985 11.124 8 Median 1.0324 1.0464 4.7892 2 0 Median 1.0848 0.99611 22.997 2 0 Median 1.0345 1.0985 1.0793 2 0 Median 1.2856 1.1788 1.9756 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25938000 12229000 13709000 3925100 1970800 1954300 4856800 2221400 2635400 16556000 7766300 8789800 600220 270480 329730 0 0 0 0 0 0 36306 2156 38151 191911;191912;191913;191914;191915;191916;191917;191918 195040;195041;195042;195043;195044;195045;195046;195047;195048;195049 195045 10 VKVGKEDSSSAEFLEK IVPPPPEKSLIGMTKVKVGKEDSSSAEFLE KVGKEDSSSAEFLEKRRAALERYLQRIVNH K V K E K R 1 0 0 1 0 0 3 1 0 0 1 3 0 1 0 3 0 0 0 2 0 0 16 2 1751.8941 Q13596;H0YK42 Q13596 222 237 SNX1 Sorting nexin-1 yes no 3 0.033331 43.454 By MS/MS 1 1.061 1.0827 NaN 1 Median 1.061 1.0827 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6861400 3790100 3071300 6861400 3790100 3071300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36307 2829 38152 191919 195050 195050 1 VKVGKEDSSSTEFVEK IVPPAPEKSIVGMTKVKVGKEDSSSTEFVE KVGKEDSSSTEFVEKRRAALERYLQRTVKH K V K E K R 0 0 0 1 0 0 3 1 0 0 0 3 0 1 0 3 1 0 0 3 0 0 16 2 1767.8891 O60749;D6RC15 O60749 219 234 SNX2 Sorting nexin-2 yes no 3 0.0030758 27.496 By MS/MS By matching By matching 1 1 1 0.83673 0.99984 9.9414 3 Plateau 0.97981 0.99984 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.78252 0.90468 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83673 0.81956 NaN 1 0 Median 8555600 4157900 4397700 6885400 3230200 3655200 0 0 0 952380 546460 405920 0 0 0 0 0 0 717870 381280 336590 36308 1629 38153 191920;191921;191922 195051;195052 195051 2 VKVPEVDVR VKGGVDVTLPRVEGKVKVPEVDVRGPKVDV PRVEGKVKVPEVDVRGPKVDVSAPDVEAHG K V K V R G 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 4 0 0 9 1 1039.6026 Q09666 Q09666 598 606 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.013184 69.598 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1.0346 0.97913 11.503 7 Median 0.87813 0.89762 7.6736 2 0 Median 1.053 0.97913 NaN 1 0 Median 1.0151 1.178 NaN 1 0 Median 1.0556 1.001 5.377 2 0 Median NaN NaN NaN 0 0 Median 1.3001 1.1549 NaN 1 0 Median 41874000 19780000 22094000 8577100 3857000 4720000 6761200 2968400 3792800 17671000 8947000 8724000 7006800 3378500 3628300 0 0 0 1858000 628720 1229300 36309 2749 38154 191923;191924;191925;191926;191927;191928;191929 195053;195054;195055;195056;195057;195058 195057 6 VKVTFNSALAQK ______________________________ ______________________________ M V K Q K E 2 0 1 0 0 1 0 0 0 0 1 2 0 1 0 1 1 0 0 2 0 0 12 1 1304.7452 A0A3B3IU60;A0A3B3ITP9;Q9Y287 A0A3B3IU60 2 13 ITM2B Integral membrane protein 2B;BRI2, membrane form;BRI2 intracellular domain;BRI2C, soluble form;Bri23 peptide yes no 2 0.05489 60.102 By MS/MS 1 1.1529 0.99943 NaN 1 Median NaN NaN NaN 0 0 Median 1.1529 0.99943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6595900 2806400 3789500 0 0 0 6595900 2806400 3789500 0 0 0 0 0 0 0 0 0 0 0 0 36310 437 38155 191930 195059 195059 0 VKYETELAMR VLQIDNARLAADDFRVKYETELAMRQSVEN ADDFRVKYETELAMRQSVENDIHGLRKVID R V K M R Q 1 1 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 10 1 1238.6329 CON__P05784;P05783;F8VZY9 P05783 166 175 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 1.762E-05 137.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 8 9 14 16 1.3155 1.2299 20.767 63 Median 1.2267 1.2166 29.22 9 0 Median 1.463 1.3357 13.838 7 0 Median 1.2611 1.3621 12.448 8 0 Median 1.2005 1.1302 11.93 9 0 Median 1.4051 1.534 14.461 14 2 Median 1.1965 1.0521 13.398 16 1 Median 3967100000 1739100000 2227900000 329750000 142220000 187520000 182050000 71969000 110080000 936540000 403100000 533430000 1156900000 530200000 626660000 699660000 289640000 410020000 662210000 301970000 360240000 + 36311 1869;749 38156;38157 191931;191932;191933;191934;191935;191936;191937;191938;191939;191940;191941;191942;191943;191944;191945;191946;191947;191948;191949;191950;191951;191952;191953;191954;191955;191956;191957;191958;191959;191960;191961;191962;191963;191964;191965;191966;191967;191968;191969;191970;191971;191972;191973;191974;191975;191976;191977;191978;191979;191980;191981;191982;191983;191984;191985;191986;191987;191988;191989;191990;191991;191992;191993 195060;195061;195062;195063;195064;195065;195066;195067;195068;195069;195070;195071;195072;195073;195074;195075;195076;195077;195078;195079;195080;195081;195082;195083;195084;195085;195086;195087;195088;195089;195090;195091;195092;195093;195094;195095;195096;195097;195098;195099;195100;195101;195102;195103;195104;195105;195106;195107;195108;195109;195110;195111;195112;195113;195114;195115;195116;195117;195118;195119;195120;195121;195122;195123;195124;195125 195108 267 65 VLAALAASSGSSSASSSSAPVAASSGQATTQSK PVLLQLLSCALCGSKVLAALAASSGSSSAS APVAASSGQATTQSKSSTKKSKKEEKEKEK K V L S K S 9 0 0 0 0 2 0 2 0 0 2 1 0 0 1 12 2 0 0 2 0 0 33 0 2923.4371 Q5T4S7;A0A0A0MSW0;X6RE05 Q5T4S7 3332 3364 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 3 7.32E-31 84.097 By MS/MS By matching 1 1 1.0359 0.97051 15.836 2 Median 1.0823 1.0855 NaN 1 0 Median 0.99142 0.8677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22969000 10582000 12387000 16694000 7754300 8939800 6275000 2827800 3447200 0 0 0 0 0 0 0 0 0 0 0 0 36312 3089 38158 191994;191995 195126;195127 195127 2 VLAALQER SNTEKLTDQVMQNPRVLAALQERLDNVPHT QVMQNPRVLAALQERLDNVPHTPSSYIETL R V L E R L 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 898.52362 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8;E9PKI2;E9PP22;C9J1B1 Q99733 37 44 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 0.025775 62.88 By MS/MS 1 1.3064 1.0955 NaN 1 Median NaN NaN NaN 0 0 Median 1.3064 1.0955 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32830000 14791000 18039000 0 0 0 32830000 14791000 18039000 0 0 0 0 0 0 0 0 0 0 0 0 36313 3766 38159 191996 195128 195128 1 VLADPSDDTK DVAYRRGYFDEEMNRVLADPSDDTKGFFDP EEMNRVLADPSDDTKGFFDPNTHENLTYLQ R V L T K G 1 0 0 3 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2979 2988 EPPK1;PLEC Epiplakin;Plectin no no 2 3.5054E-05 141.48 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 2 4 1.0508 1.015 23.566 12 Median 0.97746 0.94371 11.339 2 0 Median 1.1033 0.98229 5.5015 2 0 Median 0.9684 1.0617 NaN 1 0 Median 1.161 1.1151 NaN 1 0 Median 1.1693 1.2132 7.746 2 0 Median 1.0202 0.86207 30.565 4 0 Median 55818000 26648000 29170000 4816700 2367200 2449400 31201000 14669000 16532000 1859500 966320 893210 1921200 843260 1078000 10873000 5233000 5640100 5146400 2569100 2577300 36314 2933;2520 38160 191997;191998;191999;192000;192001;192002;192003;192004;192005;192006;192007;192008;192009 195129;195130;195131;195132;195133;195134;195135;195136;195137;195138;195139;195140;195141;195142;195143;195144;195145 195138 17 VLADPSDDTKGFFDPNTHENLTYR DVAYQRGYFSEEMNRVLADPSDDTKGFFDP KGFFDPNTHENLTYRQLLERCVEDPETGLR R V L Y R Q 1 1 2 4 0 0 1 1 1 0 2 1 0 2 2 1 3 0 1 1 0 0 24 1 2751.2776 Q15149;H0YDN1 Q15149 3638 3661 PLEC Plectin yes no 3 0.0031038 24.896 By MS/MS 2 0.88335 0.89235 10.524 2 Median 0.88335 0.89235 10.524 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21981000 10512000 11469000 21981000 10512000 11469000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36315 2933 38161 192010;192011 195146 195146 1 VLADPSDDTKGFFDPNTHENLTYVQLLR DVAYRRGYFDEEMNRVLADPSDDTKGFFDP DPNTHENLTYVQLLRRCVPDPDTGLYMLQL R V L L R R 1 1 2 4 0 1 1 1 1 0 4 1 0 2 2 1 3 0 1 2 0 0 28 1 3204.5728 P58107;A0A075B730 P58107 2375 2402 EPPK1 Epiplakin yes no 4 3.6209E-05 30.135 By MS/MS 1 1.0521 1.0902 NaN 1 Median 1.0521 1.0902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9190100 4359100 4831100 9190100 4359100 4831100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36316 2520 38162 192012 195147 195147 1 VLADSLHVGPSARPPPSLSLR DATVQGNYEDTVQVKVLADSLHVGPSARPP HVGPSARPPPSLSLREGEPFELRCTAASAS K V L L R E 2 2 0 1 0 0 0 1 1 0 4 0 0 0 4 4 0 0 0 2 0 0 21 1 2168.2066 Q9P2B2 Q9P2B2 140 160 PTGFRN Prostaglandin F2 receptor negative regulator yes yes 3 0.00037656 28.891 By MS/MS 1 0.3641 0.40453 NaN 1 Median 0.3641 0.40453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10342000 7000700 3341600 10342000 7000700 3341600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36317 4219 38163 192013 195148 195148 1 VLAEDEELYGDFEDLETGDVHK CFVTGKWEDDKDAAKVLAEDEELYGDFEDL LYGDFEDLETGDVHKGKSGPNTQNEDIEKE K V L H K G 1 0 0 4 0 0 5 2 1 0 3 1 0 1 0 0 1 0 1 2 0 0 22 0 2522.1337 Q14692 Q14692 772 793 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.01323 17.43 By matching By matching By MS/MS 1 1 2 0.97823 1.0266 16.956 4 Median 1.1103 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97123 1.0352 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87114 0.8697 22.269 2 0 Median NaN NaN NaN 0 0 Median 4865000 2116800 2748300 514860 191360 323510 0 0 0 772680 314220 458460 0 0 0 3577500 1611200 1966300 0 0 0 36318 2893 38164 192014;192015;192016;192017 195149;195150 195150 2 VLAELYVSDR ______________________________ ______________________________ M V L D R E 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 2 0 0 10 0 1163.6186 O43776;K7EQ35;K7EIU7;K7EJ19 O43776 2 11 NARS Asparagine--tRNA ligase, cytoplasmic yes no 2 0.00036244 94.692 By MS/MS By MS/MS 1 1 1.2741 1.161 18.37 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3378 1.322 NaN 1 0 Median 1.2135 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46101000 19226000 26875000 0 0 0 0 0 0 35695000 14574000 21121000 10406000 4651900 5754200 0 0 0 0 0 0 36319 1589 38165 192018;192019 195151;195152;195153;195154 195153 4 VLAELYVSDREGSDATGDGTK ______________________________ VSDREGSDATGDGTKEKPFKTGLKALMTVG M V L T K E 2 1 0 3 0 0 2 3 0 0 2 1 0 0 0 2 2 0 1 2 0 0 21 1 2182.039 O43776;K7EQ35;K7EIU7;K7EJ19 O43776 2 22 NARS Asparagine--tRNA ligase, cytoplasmic yes no 3 2.7452E-13 85.737 By MS/MS By matching 1 1 1.1416 1.2076 23.61 2 Median 1.0206 1.022 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.277 1.4271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33015000 15268000 17746000 28350000 13336000 15013000 0 0 0 4665300 1932000 2733300 0 0 0 0 0 0 0 0 0 36320 1589 38166 192020;192021 195155;195156 195155 2 VLAEPVPLPADPMELK RRKWKLNLIAELESRVLAEPVPLPADPMEL LAEPVPLPADPMELKNLEYRPVKVRGCFDH R V L L K N 2 0 0 1 0 0 2 0 0 0 3 1 1 0 4 0 0 0 0 2 0 0 16 0 1717.9324 Q15526 Q15526 98 113 SURF1 Surfeit locus protein 1 yes yes 2 0.00054859 45.359 By matching By MS/MS 1 1 0.54815 0.48858 50.006 2 Median NaN NaN NaN 0 0 Median 0.81402 0.69582 NaN 1 0 Median 0.36911 0.34306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1211500 672030 539440 0 0 0 615330 284840 330490 596150 387200 208950 0 0 0 0 0 0 0 0 0 36321 2956 38167 192022;192023 195157 195157 1 VLAETPDSFEK LCTREDVEVAESPLRVLAETPDSFEKHIRS SPLRVLAETPDSFEKHIRSILQRSVANPAF R V L E K H 1 0 0 1 0 0 2 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 11 0 1234.6081 Q99567;J3KMX1 Q99567 521 531 NUP88 Nuclear pore complex protein Nup88 yes no 2 0.00029355 72.643 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 1 1.0274 1.0368 47.877 7 Median NaN NaN NaN 0 0 Median 0.81896 0.71783 NaN 1 0 Median 0.98285 1.1014 8.5523 2 0 Median 1.0786 0.93449 6.8743 2 2 Median 2.5309 2.5845 NaN 1 0 Median 2.583 2.2162 NaN 1 0 Median 65640000 30228000 35412000 0 0 0 3777700 1901000 1876800 39226000 18961000 20265000 9413200 4877900 4535300 12261000 4135300 8125300 962160 352480 609680 36322 3753 38168 192024;192025;192026;192027;192028;192029;192030 195158;195159;195160;195161;195162;195163 195159 6 VLAFFETDMER TDHIEVVQDHSALFKVLAFFETDMERRCKM ALFKVLAFFETDMERRCKMHKRRIAMLEPL K V L E R R 1 1 0 1 0 0 2 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 11 0 1356.6384 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 457 467 KIAA1279 KIF1-binding protein yes no 2 0.014477 56.258 By MS/MS By MS/MS By matching 2 1 1 1.0189 1.008 13.647 4 Median 1.0189 1.008 1.2761 2 2 Median 1.175 1.0363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89192 0.77562 NaN 1 0 Median 4637900 2123600 2514300 4000900 1836600 2164300 561070 248730 312340 0 0 0 0 0 0 0 0 0 75893 38298 37595 36323 323 38169 192031;192032;192033;192034 195164;195165;195166 195164 3 VLAFGAKPDSTLHTYFPSFLSR PSLQEQLCQLYPRLKVLAFGAKPDSTLHTY PDSTLHTYFPSFLSRATPSCPPEMKKELLS K V L S R A 2 1 0 1 0 0 0 1 1 0 3 1 0 3 2 3 2 0 1 1 0 0 22 1 2453.2743 Q6NUQ4;H7C0H8;H7C085 Q6NUQ4 351 372 TMEM214 Transmembrane protein 214 yes no 3 0.059208 16.506 By MS/MS 1 1.3985 1.485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3985 1.485 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7851200 3292000 4559200 0 0 0 0 0 0 7851200 3292000 4559200 0 0 0 0 0 0 0 0 0 36324 3145 38170 192035 195167 195167 1 VLAFLSSVAGDALTR PYLVPKLTTPPVNTRVLAFLSSVAGDALTR VLAFLSSVAGDALTRHLGVILPAVMLALKE R V L T R H 3 1 0 1 0 0 0 1 0 0 3 0 0 1 0 2 1 0 0 2 0 0 15 0 1518.8406 Q92616 Q92616 2093 2107 GCN1L1 Translational activator GCN1 yes yes 2 5.5054E-10 161.94 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1 1.2213 1.1222 22.109 8 Median 1.0529 0.99082 NaN 1 0 Median 1.2264 1.0099 6.4966 3 0 Plateau 1.1484 1.2753 NaN 1 0 Median 1.4668 1.2708 NaN 1 0 Median 1.7181 1.7965 NaN 1 0 Median 1.4773 1.2469 NaN 1 0 Median 43754000 19806000 23948000 8593400 4063400 4530000 32279000 14484000 17796000 2236000 1022600 1213300 155630 68477 87153 292430 85203 207220 196660 82233 114420 36325 3544 38171 192036;192037;192038;192039;192040;192041;192042;192043 195168;195169;195170;195171;195172;195173;195174 195173 7 VLAGDKNFITAEELR TTDTDTADQVIASFKVLAGDKNFITAEELR VLAGDKNFITAEELRRELPPDQAEYCIARM K V L L R R 2 1 1 1 0 0 2 1 0 1 2 1 0 1 0 0 1 0 0 1 0 0 15 1 1674.8941 O43707;F5GXS2;H7C144 O43707 854 868 ACTN4 Alpha-actinin-4 yes no 2;3 6.2618E-26 199.12 By MS/MS By MS/MS By MS/MS 3 3 1 1.2121 1.1834 25.515 7 Median 1.2121 1.2656 27.972 3 1 Median 1.2258 1.1402 22.888 3 0 Median 1.0439 1.1834 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 109640000 49041000 60599000 78824000 34415000 44409000 20025000 9262100 10763000 10791000 5363800 5426700 0 0 0 0 0 0 0 0 0 36326 1585 38172 192044;192045;192046;192047;192048;192049;192050 195175;195176;195177;195178;195179;195180 195176 6 VLAGDKNFITAEELRR TTDTDTADQVIASFKVLAGDKNFITAEELR LAGDKNFITAEELRRELPPDQAEYCIARMA K V L R R E 2 2 1 1 0 0 2 1 0 1 2 1 0 1 0 0 1 0 0 1 0 0 16 2 1830.9952 O43707;F5GXS2;H7C144 O43707 854 869 ACTN4 Alpha-actinin-4 yes no 2;3;4 4.3251E-19 184.03 By MS/MS By matching By MS/MS By matching 4 3 1 2 0.98686 1.0666 29.78 10 Median 1.0197 1.0983 25.687 4 0 Median 0.99998 1.0846 40.53 3 0 Median 0.87848 1.0336 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.066 1.2471 39.943 2 0 Median NaN NaN NaN 0 0 Median 233480000 111950000 121530000 218760000 104970000 113790000 3949900 1998300 1951600 4859200 2384800 2474400 0 0 0 5914200 2596700 3317600 0 0 0 36327 1585 38173 192051;192052;192053;192054;192055;192056;192057;192058;192059;192060 195181;195182;195183;195184;195185;195186;195187 195185 7 VLAGETLSVNDPPDVLDR TIHLTSPVVREEMEKVLAGETLSVNDPPDV GETLSVNDPPDVLDRQKCLAALASLRHAKW K V L D R Q 1 1 1 3 0 0 1 1 0 0 3 0 0 0 2 1 1 0 0 3 0 0 18 0 1908.9793 Q12906;K7EKJ9;K7EQR9 Q12906 183 200 ILF3 Interleukin enhancer-binding factor 3 yes no 2;3 1.239E-12 128.31 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 3 8 4 5 5 0.8161 0.74479 18.131 29 Median 0.80967 0.79406 35.888 4 0 Median 0.86644 0.74966 9.589 3 0 Median 0.67065 0.71808 16.447 8 0 Median 0.95031 0.81107 3.108 4 0 Median 0.70244 0.70146 10.965 5 0 Median 0.84028 0.70481 20.849 5 0 Median 240820000 137350000 103460000 19834000 10894000 8939200 6427300 3345900 3081400 106250000 61617000 44634000 3201000 1590000 1611000 102020000 58248000 43775000 3078300 1657400 1420900 36328 2769 38174 192061;192062;192063;192064;192065;192066;192067;192068;192069;192070;192071;192072;192073;192074;192075;192076;192077;192078;192079;192080;192081;192082;192083;192084;192085;192086;192087;192088;192089 195188;195189;195190;195191;195192;195193;195194;195195;195196;195197;195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208 195190 21 VLAGLYMGR NKAIITALGVERRNRVLAGLYMGRSDTQLV VERRNRVLAGLYMGRSDTQLVVRQASLHVW R V L G R S 1 1 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 1 1 0 0 9 0 978.53207 Q92616 Q92616 1885 1893 GCN1L1 Translational activator GCN1 yes yes 2 0.0039736 79.116 By MS/MS 2 1.1158 0.91184 NaN 1 Median NaN NaN NaN 0 0 Median 1.1158 0.91184 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9029200 4257700 4771500 0 0 0 9029200 4257700 4771500 0 0 0 0 0 0 0 0 0 0 0 0 36329 3544 38175 192090;192091 195209;195210 195209 2 VLAGQTLDINMAGEPKPDRPK NERHARAAVLGENGRVLAGQTLDINMAGEP LDINMAGEPKPDRPKGLKRAASAIYSGYIF R V L P K G 2 1 1 2 0 1 1 2 0 1 2 2 1 0 3 0 1 0 0 1 0 0 21 2 2249.1838 Q9UKM9;Q5QPL9;Q5QPM1 Q9UKM9 79 99 RALY RNA-binding protein Raly yes no 3;4 1.1658E-17 101.64 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 5 12 9 0.59221 0.63738 28.477 30 Median 0.56267 0.59573 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51211 0.57996 4.1012 3 0 Median 0.82562 0.82588 10.772 5 0 Median 0.54623 0.62485 36.893 12 1 Median 0.76649 0.65899 16.973 9 0 Median 550020000 349910000 200110000 1915200 1427300 487960 0 0 0 81466000 52608000 28858000 15564000 7999000 7564600 425090000 273890000 151200000 25983000 13986000 11997000 36330 4313 38176;38177 192092;192093;192094;192095;192096;192097;192098;192099;192100;192101;192102;192103;192104;192105;192106;192107;192108;192109;192110;192111;192112;192113;192114;192115;192116;192117;192118;192119;192120;192121 195211;195212;195213;195214;195215;195216;195217;195218;195219;195220;195221;195222;195223;195224;195225;195226;195227;195228;195229;195230;195231;195232;195233;195234;195235;195236;195237 195230 1923 27 VLAHLAPLFDNPK RQGVFSSLNHIVEKRVLAHLAPLFDNPKLD KRVLAHLAPLFDNPKLDKELRAMLREKFPE R V L P K L 2 0 1 1 0 0 0 0 1 0 3 1 0 1 2 0 0 0 0 1 0 0 13 0 1433.8031 Q68E01 Q68E01 469 481 INTS3 Integrator complex subunit 3 yes yes 3 0.0035011 34.685 By MS/MS By matching 1 1 0.65564 0.63814 0.70966 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57824 0.63494 NaN 1 0 Median 0.7434 0.64135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3578500 2126500 1452000 0 0 0 0 0 0 3350500 1996100 1354400 227980 130400 97572 0 0 0 0 0 0 36331 3126 38178 192122;192123 195238;195239 195238 2 VLAIGDEKDQTR LEIPDTLQELFARYRVLAIGDEKDQTRKED RYRVLAIGDEKDQTRKEDELNSVDDIHFLV R V L T R K 1 1 0 2 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1343.7045 Q12789 Q12789 1402 1413 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2;3 0.0001216 134.98 By MS/MS By MS/MS 2 1 0.8839 1.0591 22.48 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86058 1.0313 3.7627 2 0 Median 1.5726 1.5181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35351000 18657000 16695000 0 0 0 0 0 0 34520000 18318000 16202000 831300 338480 492820 0 0 0 0 0 0 36332 2758 38179 192124;192125;192126 195240;195241;195242;195243;195244;195245 195241 6 VLAINILGR TVLTIMDIKSESGLRVLAINILGRFLLNND SESGLRVLAINILGRFLLNNDKNIRYVALT R V L G R F 1 1 1 0 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 967.61785 O43747 O43747 307 315 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.0029572 68.422 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.2877 1.0815 7.3443 5 Median 1.1376 1.0766 NaN 1 0 Median 1.281 1.1225 5.2625 2 0 Median NaN NaN NaN 0 0 Median 1.2877 1.0772 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4389 1.2725 NaN 1 0 Median 16588000 7306700 9281400 8128900 3654900 4474000 8067500 3453800 4613600 0 0 0 237700 122720 114980 0 0 0 154010 75292 78719 36333 1587 38180 192127;192128;192129;192130;192131 195246;195247;195248;195249 195246 4 VLALELFEQITK LEQWIEKRRGEKLDKVLALELFEQITKGVD LDKVLALELFEQITKGVDYIHSKKLIHRDL K V L T K G 1 0 0 0 0 1 2 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 12 0 1402.8072 P19525 P19525 389 400 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00020783 85.377 By MS/MS By matching By matching By MS/MS 1 2 3 1 1.0821 1.0212 13.291 7 Median 0.96689 0.92824 NaN 1 0 Median 1.2471 1.0922 22.019 2 0 Median 1.0821 1.0852 12.838 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2612 1.0616 NaN 1 0 Median 9207800 4427200 4780600 4167800 2152900 2015000 2096200 913030 1183100 1129000 555730 573290 0 0 0 0 0 0 1814800 805550 1009200 36334 2067 38181 192132;192133;192134;192135;192136;192137;192138 195250;195251;195252 195252 3 VLALPEPSPAAPTLR GLGKGVARLSAEAEKVLALPEPSPAAPTLR VLALPEPSPAAPTLRSELELTLGKLEQVRS K V L L R S 3 1 0 0 0 0 1 0 0 0 3 0 0 0 4 1 1 0 0 1 0 0 15 0 1530.877 Q15149;H0YDN1 Q15149 1187 1201 PLEC Plectin yes no 2 2.7277E-10 149.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 0.7617 0.66312 15.856 9 Median 0.60492 0.58256 NaN 1 0 Median 0.8298 0.69111 16.619 2 0 Median 0.60021 0.62768 NaN 1 0 Median 0.92995 0.80736 27.834 2 0 Median 0.73412 0.75178 NaN 1 0 Median 0.80142 0.66745 1.0829 2 0 Median 151200000 90633000 60568000 84328000 51208000 33120000 11693000 6271400 5421300 34903000 21608000 13295000 1972300 1111000 861350 15332000 8823900 6508000 2974200 1611300 1362900 36335 2933 38182 192139;192140;192141;192142;192143;192144;192145;192146;192147 195253;195254;195255;195256;195257;195258;195259;195260;195261;195262;195263;195264;195265;195266;195267;195268 195255 16 VLAMSGDPNYLHR EKFGKEWAHATIIPKVLAMSGDPNYLHRMT PKVLAMSGDPNYLHRMTTLFCINVLSEVCG K V L H R M 1 1 1 1 0 0 0 1 1 0 2 0 1 0 1 1 0 0 1 1 0 0 13 0 1471.7242 P30153;B3KQV6;E9PH38 P30153 486 498 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2;3 1.9406E-18 136.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 2 4 1 0.93522 0.82827 19.888 16 Median 0.86992 0.81373 9.782 5 0 Median 0.95746 0.83444 5.4746 5 1 Median 0.94093 0.9322 NaN 1 0 Median 1.302 1.1054 33.16 4 2 Linear 1.2609 1.2452 NaN 1 0 Median NaN NaN NaN 0 0 Median 291520000 151900000 139610000 214580000 112440000 102140000 33205000 16304000 16900000 27931000 14723000 13208000 12787000 6846100 5941000 3013200 1592900 1420300 0 0 0 36336 2190 38183;38184 192148;192149;192150;192151;192152;192153;192154;192155;192156;192157;192158;192159;192160;192161;192162;192163;192164 195269;195270;195271;195272;195273;195274;195275;195276;195277;195278;195279;195280;195281;195282;195283;195284;195285;195286 195279 933 18 VLANNSLSFEK GSFKEALNVINTHTKVLANNSLSFEKAYCE THTKVLANNSLSFEKAYCEYRLNRIENALK K V L E K A 1 0 2 0 0 0 1 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1220.6401 O76094;D6RDY6;R4GNC1 O76094 74 84 SRP72 Signal recognition particle subunit SRP72 yes no 2 0.0001134 121.73 By MS/MS By MS/MS By MS/MS 2 1 2 1.013 0.89119 24.321 5 Median 0.90968 0.88199 26.673 2 0 Median NaN NaN NaN 0 0 Median 1.3071 1.3149 NaN 1 0 Median 0.95136 0.82574 10.788 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44549000 21509000 23040000 23763000 11841000 11923000 0 0 0 15330000 7123200 8206300 5456000 2545100 2910900 0 0 0 0 0 0 36337 1721 38185 192165;192166;192167;192168;192169 195287;195288;195289;195290;195291;195292 195289 6 VLANPGNSQVAR AAVENLPTFLVELSRVLANPGNSQVARVAA LSRVLANPGNSQVARVAAGLQIKNSLTSKD R V L A R V 2 1 2 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1224.6575 Q14974;J3QR48 Q14974 43 54 KPNB1 Importin subunit beta-1 yes no 2 4.4067E-06 163.16 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 5 3 5 4 0.91985 0.86415 17.914 25 Median 0.92725 0.86415 10.891 5 0 Plateau 1.1088 0.95946 6.7822 3 1 Plateau 0.71413 0.70046 14.496 5 0 Median 1.0629 0.87787 14.984 3 0 Median 0.87375 0.93398 23.56 5 2 Median 0.84129 0.69762 27.021 4 0 Median 121740000 59885000 61852000 21369000 10653000 10716000 52830000 25008000 27822000 23404000 12236000 11168000 10371000 4916800 5454000 8637000 4281600 4355400 5125500 2788700 2336800 36338 2904 38186 192170;192171;192172;192173;192174;192175;192176;192177;192178;192179;192180;192181;192182;192183;192184;192185;192186;192187;192188;192189;192190;192191;192192;192193;192194 195293;195294;195295;195296;195297;195298;195299;195300;195301;195302;195303;195304;195305;195306;195307;195308;195309;195310;195311;195312;195313;195314;195315;195316;195317;195318;195319;195320;195321 195310 29 VLANQYK CDLVSDFDGFSERFKVLANQYKSIYPTLEI DGFSERFKVLANQYKSIYPTLEIDIEGELQ K V L Y K S 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 834.45995 P30520 P30520 197 203 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.064634 36.587 By matching By MS/MS By matching 1 1 2 1.1771 1.3439 17.191 4 Median 1.4093 1.3883 NaN 1 0 Median 1.1221 0.96465 NaN 1 0 Median 1.1771 1.3439 0.28048 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2973700 1395700 1578000 323580 135090 188490 1987800 965550 1022200 662380 295080 367300 0 0 0 0 0 0 0 0 0 36339 2195 38187 192195;192196;192197;192198 195322 195322 1 VLAPASTLQSSYQIPTENSMTAR MPNIAVGQNVTVTERVLAPASTLQSSYQIP QSSYQIPTENSMTARNTTVSGAGVPGPLPD R V L A R N 3 1 1 0 0 2 1 0 0 1 2 0 1 0 2 4 3 0 1 1 0 0 23 0 2464.2268 Q14126 Q14126 1050 1072 DSG2 Desmoglein-2 yes yes 3 6.5053E-05 40.381 By matching By MS/MS By MS/MS 1 1 6 0.59268 0.62417 41.582 8 Median 0.79754 0.7882 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70707 0.75593 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56222 0.59133 43.036 6 2 Median NaN NaN NaN 0 0 Median 33815000 21727000 12088000 2056800 1177900 878820 0 0 0 1907000 1269300 637750 0 0 0 29851000 19280000 10571000 0 0 0 36340 2855 38188 192199;192200;192201;192202;192203;192204;192205;192206 195323;195324;195325;195326;195327;195328;195329 195326 7 VLAPELIPSILEK EKENTTTIVFRMFDKVLAPELIPSILEKFI DKVLAPELIPSILEKFIRVYMREHDLQEEE K V L E K F 1 0 0 0 0 0 2 0 0 2 3 1 0 0 2 1 0 0 0 1 0 0 13 0 1420.8541 P50748;E7ES84 P50748 727 739 KNTC1 Kinetochore-associated protein 1 yes no 2 0.016991 32.523 By MS/MS By matching 2 1 0.65106 0.62111 18.655 3 Median 0.63317 0.61621 1.1189 2 0 Median 0.96227 0.85101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5125700 3140900 1984700 4505500 2814400 1691200 620120 326570 293550 0 0 0 0 0 0 0 0 0 0 0 0 36341 2420 38189 192207;192208;192209 195330 195330 1 VLAPILPDNFSTPTGSR PRDSPAFPDSPWRERVLAPILPDNFSTPTG APILPDNFSTPTGSRTDSQSVRHSPIAPSS R V L S R T 1 1 1 1 0 0 0 1 0 1 2 0 0 1 3 2 2 0 0 1 0 0 17 0 1783.9468 Q9NQS7 Q9NQS7 281 297 INCENP Inner centromere protein yes yes 2 6.7118E-06 83.314 By MS/MS By matching 2 2 0.6971 0.68156 12.322 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65374 0.68156 1.4925 2 0 Median 0.81999 0.69933 21.135 2 0 Median 10720000 6443900 4276300 0 0 0 0 0 0 0 0 0 0 0 0 10430000 6310500 4119000 290680 133450 157230 36342 4065 38190 192210;192211;192212;192213 195331;195332;195333;195334 195333 4 VLAQNSGFDLQETLVK LGVQAFADALLIIPKVLAQNSGFDLQETLV LAQNSGFDLQETLVKIQAEHSESGQLVGVD K V L V K I 1 0 1 1 0 2 1 1 0 0 3 1 0 1 0 1 1 0 0 2 0 0 16 0 1760.9309 P40227 P40227 450 465 CCT6A T-complex protein 1 subunit zeta yes yes 2 3.5009E-10 151.1 By MS/MS By MS/MS By MS/MS By MS/MS 6 2 2 2 1.2383 1.1911 24.585 12 Median 1.2383 1.1771 19.443 6 0 Median 1.3075 1.1157 19.799 2 0 Median 1.0884 1.0787 7.9049 2 0 Median NaN NaN NaN 0 0 Median 1.9114 1.8849 15.813 2 0 Median NaN NaN NaN 0 0 Median 183080000 80672000 102410000 120360000 53050000 67311000 18866000 8685900 10180000 34447000 15574000 18872000 0 0 0 9410200 3362000 6048300 0 0 0 36343 2285 38191 192214;192215;192216;192217;192218;192219;192220;192221;192222;192223;192224;192225 195335;195336;195337;195338;195339;195340;195341;195342;195343;195344;195345;195346;195347;195348 195345 14 VLAQQGEYSEAIPILR EHQPDNIKALFRKGKVLAQQGEYSEAIPIL LAQQGEYSEAIPILRAALKLEPSNKTIHAE K V L L R A 2 1 0 0 0 2 2 1 0 2 2 0 0 0 1 1 0 0 1 1 0 0 16 0 1785.9625 Q14318;A0A0A0MTJ1;U3KQI1 Q14318 315 330 FKBP8 Peptidyl-prolyl cis-trans isomerase FKBP8 yes no 2 1.2754E-09 99.215 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.756 0.71291 13.425 6 Median 0.65381 0.62303 NaN 1 0 Median 0.98231 0.84591 NaN 1 0 Median 0.65848 0.65515 NaN 1 0 Median 0.96847 0.84595 NaN 1 0 Median 0.66282 0.66716 NaN 1 0 Median 0.86228 0.7618 NaN 1 0 Median 23929000 12814000 11115000 12933000 7089300 5844100 2251100 1063500 1187600 7114000 3786100 3327900 568080 271860 296220 867070 497540 369520 195450 105700 89751 36344 2872 38192 192226;192227;192228;192229;192230;192231 195349;195350;195351;195352 195352 4 VLAQYYTVTDEHHR QAPDNEITIKKLRKKVLAQYYTVTDEHHRS KVLAQYYTVTDEHHRSEEELLVIFNKKISK K V L H R S 1 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 2 0 2 2 0 0 14 0 1730.8376 Q9NX58 Q9NX58 336 349 LYAR Cell growth-regulating nucleolar protein yes yes 2;3;4 3.5068E-09 124.12 By matching By matching By MS/MS By MS/MS By MS/MS 2 2 3 2 1 1.1777 1.0852 74.768 10 Median 4.2454 4.187 138.6 2 0 Median 1.3395 1.1405 20.109 2 0 Median 1.1237 1.0887 9.2456 3 0 Plateau 1.1391 0.98029 7.7038 2 0 Median 1.2009 1.1999 NaN 1 0 Median NaN NaN NaN 0 0 Median 170240000 75602000 94639000 10271000 1716000 8554700 8532200 3331300 5200900 105540000 49710000 55828000 35765000 16276000 19488000 10135000 4568800 5566400 0 0 0 36345 4160 38193 192232;192233;192234;192235;192236;192237;192238;192239;192240;192241 195353;195354;195355;195356;195357;195358;195359;195360;195361;195362 195353 10 VLASDAAAFLK YEKYYRQVDTGNTGRVLASDAAAFLKKSGL NTGRVLASDAAAFLKKSGLPDLILGKIWDL R V L L K K 4 0 0 1 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1104.6179 P42566;B1AUU8;S4R3U1 P42566 34 44 EPS15 Epidermal growth factor receptor substrate 15 yes no 2 0.0092274 39.022 By MS/MS By matching 1 1 1.6883 1.5733 83.194 2 Median 0.8957 0.87364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.1824 2.8333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5210800 1644400 3566300 5055700 1576000 3479800 0 0 0 0 0 0 155040 68474 86563 0 0 0 0 0 0 36346 580 38194 192242;192243 195363;195364 195364 2 VLASLIIR DTALDMRGRCSAGQKVLASLIIRLALAETF RCSAGQKVLASLIIRLALAETFCLNCGIIA K V L I R L 1 1 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 883.58549 Q92878;A0A1W2PQ90;A0A494BZX8;H7C0V2 Q92878 1207 1214 RAD50 DNA repair protein RAD50 yes no 2 0.0034153 97.602 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1 1.3954 1.2087 21.399 8 Median 1.1058 1.0413 NaN 1 0 Median 1.433 1.2481 5.0923 2 0 Median 1.0346 1.1373 NaN 1 0 Median 1.8028 1.5911 38.309 2 0 Median 1.3704 1.4374 NaN 1 0 Median 1.4133 1.1817 NaN 1 0 Median 36782000 17321000 19461000 8136000 3611000 4525000 2799400 1172300 1627100 19396000 9978100 9418100 1696900 676730 1020200 4112700 1623300 2489400 640970 259720 381250 36347 3561 38195 192244;192245;192246;192247;192248;192249;192250;192251 195365;195366;195367;195368;195369;195370 195368 6 VLASSLNSLPDFFLPEAMHR AGIYLSLSLKNPLKKVLASSLNSLPDFFLP LNSLPDFFLPEAMHRFTSRLQEELNTTDLY K V L H R F 2 1 1 1 0 0 1 0 1 0 4 0 1 2 2 3 0 0 0 1 0 0 20 0 2243.1409 Q6YHU6;B6ZDE5;F5H3M9;B5MC89 Q6YHU6 98 117 THADA Thyroid adenoma-associated protein yes no 3 0.021402 14.77 By MS/MS 1 0.78081 0.77869 NaN 1 Median 0.78081 0.77869 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 621830 324440 297390 621830 324440 297390 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36348 3194 38196 192252 195371;195372 195371 2 VLASTISTTSTIEFK LAAPTGHPPTSGVEKVLASTISTTSTIEFK VLASTISTTSTIEFKNMLKNASRKPSDDKH K V L F K N 1 0 0 0 0 0 1 0 0 2 1 1 0 1 0 3 4 0 0 1 0 0 15 0 1596.8611 Q5VT52 Q5VT52 996 1010 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 yes yes 2 0.045984 23.605 By MS/MS 1 0.59405 0.66126 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59405 0.66126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2154700 1360500 794250 0 0 0 0 0 0 2154700 1360500 794250 0 0 0 0 0 0 0 0 0 36349 3110 38197 192253 195373 195373 1 VLATAFDTTLGGR AYQVSVCAFNRGKLKVLATAFDTTLGGRKF LKVLATAFDTTLGGRKFDEVLVNHFCEEFG K V L G R K 2 1 0 1 0 0 0 2 0 0 2 0 0 1 0 0 3 0 0 1 0 0 13 0 1320.7038 P34932;A0A087WYC1;A0A087WTS8 P34932 222 234 HSPA4 Heat shock 70 kDa protein 4 yes no 2 2.86E-22 198.61 By MS/MS By MS/MS By MS/MS By matching 4 2 1 1 1.2112 1.0971 10.354 8 Median 1.2188 1.1652 8.3758 4 0 Median 1.2379 1.0463 2.796 2 0 Median NaN NaN NaN 0 0 Median 1.1906 1.0107 NaN 1 0 Median 0.9418 0.98841 NaN 1 0 Median NaN NaN NaN 0 0 Median 184180000 81198000 102990000 126500000 55417000 71081000 51193000 23065000 28127000 0 0 0 5667600 2373300 3294300 824980 342520 482460 0 0 0 36350 2230 38198 192254;192255;192256;192257;192258;192259;192260;192261 195374;195375;195376;195377;195378;195379;195380;195381;195382;195383;195384 195374 11 VLATEDRSDHLIQTDTVNLHR DATNVAAAFEEAVRRVLATEDRSDHLIQTD RSDHLIQTDTVNLHRKPKPSSSCC______ R V L H R K 1 2 1 3 0 1 1 0 2 1 3 0 0 0 0 1 3 0 0 2 0 0 21 1 2432.2408 P51151 P51151 172 192 RAB9A Ras-related protein Rab-9A yes yes 4 9.5176E-12 63.302 By MS/MS By MS/MS 1 1 1.1657 1.1106 9.6797 2 Median 1.1126 1.1893 NaN 1 0 Median 1.2212 1.0372 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20029000 8457100 11572000 14076000 6004300 8072000 5952300 2452700 3499500 0 0 0 0 0 0 0 0 0 0 0 0 36351 2429 38199 192262;192263 195385;195386;195387;195388 195386 4 VLATTFDPYLGGR AYQVLVCAFNKGKLKVLATTFDPYLGGRNF LKVLATTFDPYLGGRNFDEALVDYFCDEFK K V L G R N 1 1 0 1 0 0 0 2 0 0 2 0 0 1 1 0 2 0 1 1 0 0 13 0 1408.7351 O95757;E9PDE8;D6RJ96 O95757 222 234 HSPA4L Heat shock 70 kDa protein 4L yes no 2 8.0804E-06 96.89 By MS/MS By MS/MS By matching 2 1 1 1.1164 0.99535 29.538 4 Median 1.3549 1.3494 30.914 2 0 Median NaN NaN NaN 0 0 Median 0.82383 0.88328 NaN 1 0 Median 1.106 0.91354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29967000 13672000 16295000 26153000 11830000 14323000 0 0 0 3676700 1791600 1885100 137560 49877 87681 0 0 0 0 0 0 36352 1790 38200 192264;192265;192266;192267 195389;195390;195391 195389 3 VLATVTKPVGGDK YSAAKSKVEKKKKEKVLATVTKPVGGDKNG EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K V L D K N 1 0 0 1 0 0 0 2 0 0 1 2 0 0 1 0 2 0 0 3 0 0 13 1 1283.7449 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 88 100 RPL6 60S ribosomal protein L6 yes no 2;3 1.8376E-06 109.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 5 5 7 5 0.97399 0.95796 15.743 31 Median 0.88279 0.89582 6.5486 5 0 Median 0.97886 0.88665 12.652 5 0 Median 0.97383 1.0242 3.7152 5 0 Median 1.2065 1.1345 15.206 5 0 Median 0.86964 0.91904 24.678 7 0 Median 1.0577 0.94331 7.768 4 0 Median 178470000 90387000 88086000 53966000 27920000 26046000 55173000 27747000 27426000 14366000 7244400 7121800 10773000 4795300 5978100 32617000 17314000 15303000 11578000 5366400 6211400 36353 2703 38201 192268;192269;192270;192271;192272;192273;192274;192275;192276;192277;192278;192279;192280;192281;192282;192283;192284;192285;192286;192287;192288;192289;192290;192291;192292;192293;192294;192295;192296;192297;192298;192299 195392;195393;195394;195395;195396;195397;195398;195399;195400;195401;195402;195403;195404;195405;195406;195407;195408;195409;195410;195411;195412;195413;195414;195415;195416;195417;195418;195419;195420;195421;195422;195423;195424;195425;195426;195427;195428;195429;195430;195431;195432;195433;195434;195435 195423 44 VLAVNQENEHLMEDYEK SGAQKAETAANRICKVLAVNQENEHLMEDY AVNQENEHLMEDYEKLASDLLEWIRRTIPW K V L E K L 1 0 2 1 0 1 4 0 1 0 2 1 1 0 0 0 0 0 1 2 0 0 17 0 2059.9521 O43707;K7EJH8 O43707 284 300 ACTN4 Alpha-actinin-4 yes no 2;3 3.5308E-19 180.09 By MS/MS By matching By MS/MS By MS/MS By matching 4 3 1 1 1 1.0805 1.033 14.62 10 Median 1.1273 1.0867 8.0533 4 0 Median 1.0222 0.87946 11.659 3 0 Median 0.76676 0.82953 NaN 1 0 Median 1.0016 0.85752 NaN 1 0 Median 1.1579 1.1974 NaN 1 0 Median NaN NaN NaN 0 0 Median 193130000 91430000 101690000 155320000 72049000 83275000 6804100 3256500 3547700 23988000 12787000 11200000 2876500 1491100 1385400 4132700 1846100 2286600 0 0 0 36354 1585 38202;38203 192300;192301;192302;192303;192304;192305;192306;192307;192308;192309 195436;195437;195438;195439;195440;195441;195442;195443;195444 195440 515 9 VLAVNQENEQLMEDYEK SGAQKAETAANRICKVLAVNQENEQLMEDY AVNQENEQLMEDYEKLASDLLEWIRRTIPW K V L E K L 1 0 2 1 0 2 4 0 0 0 2 1 1 0 0 0 0 0 1 2 0 0 17 0 2050.9517 P12814;H9KV75;G3V2W4;G3V2N5 P12814 265 281 ACTN1 Alpha-actinin-1 yes no 2 5.2214E-07 88.441 By MS/MS By matching By MS/MS 1 2 1 1.0158 0.97782 14.824 4 Median 1.1279 1.0902 NaN 1 0 Median 0.9751 0.85999 2.7758 2 0 Median 1.0297 1.1278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18779000 8738300 10041000 13627000 6025100 7602300 2151700 1089800 1062000 3000000 1623500 1376600 0 0 0 0 0 0 0 0 0 36355 1983 38204 192310;192311;192312;192313 195445;195446;195447 195446 3 VLAVSLINEALDK TVSQVNAQTQEETDRVLAVSLINEALDKGS DRVLAVSLINEALDKGSPEKTLSALLLPAA R V L D K G 2 0 1 1 0 0 1 0 0 1 3 1 0 0 0 1 0 0 0 2 0 0 13 0 1383.7973 F2Z2E2;Q86VI3 F2Z2E2 482 494 IQGAP3 Ras GTPase-activating-like protein IQGAP3 yes no 2 0.00062741 69.01 By MS/MS By MS/MS 1 2 0.68679 0.65214 43.991 3 Median 0.68679 0.65214 NaN 1 0 Median 0.74892 0.66206 62.2 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9032600 4263200 4769500 841450 548660 292790 8191200 3714500 4476700 0 0 0 0 0 0 0 0 0 0 0 0 36356 989 38205 192314;192315;192316 195448;195449 195449 2 VLAVTAIR GTALKNGKVVTHGGRVLAVTAIRENLISAL VVTHGGRVLAVTAIRENLISALEEAKKGLA R V L I R E 2 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 841.53854 P22102 P22102 386 393 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes yes 2 0.0028236 104.45 By MS/MS By MS/MS By matching By matching 3 4 1 1 1.1272 1.0182 16.084 9 Median 1.0605 1.03 16.557 3 0 Median 1.3799 1.146 8.7952 4 0 Linear 1.423 1.4315 NaN 1 0 Median 1.0208 0.88745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57559000 25452000 32107000 13958000 6735800 7222400 36887000 15721000 21165000 3206100 1316400 1889600 3507800 1678400 1829400 0 0 0 0 0 0 36357 2098 38206 192317;192318;192319;192320;192321;192322;192323;192324;192325 195450;195451;195452;195453 195450 4 VLCLAVAVGHVK KVDEVKSTIKFQMKKVLCLAVAVGHVKMTD MKKVLCLAVAVGHVKMTDDELVYNIHLAVN K V L V K M 2 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 4 0 0 12 0 1264.7326 P62906 P62906 162 173 RPL10A 60S ribosomal protein L10a yes yes 3 0.051908 14.561 By MS/MS 1 1.0903 0.93189 NaN 1 Median NaN NaN NaN 0 0 Median 1.0903 0.93189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 839650 461490 378160 0 0 0 839650 461490 378160 0 0 0 0 0 0 0 0 0 0 0 0 36358 2608 38207 192326 195454 195454 1 VLDAESMHDCVSVVK SSIPTALTRWTEECKVLDAESMHDCVSVVK VLDAESMHDCVSVVKVSIVNHLEFLRDEEL K V L V K V 1 0 0 2 1 0 1 0 1 0 1 1 1 0 0 2 0 0 0 4 0 0 15 0 1687.7909 Q7Z6Z7 Q7Z6Z7 2657 2671 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 8.7764E-05 51.695 By MS/MS 2 1.1267 0.98774 4.0933 2 Median NaN NaN NaN 0 0 Median 1.1267 0.98774 4.0933 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14011000 6291200 7719800 0 0 0 14011000 6291200 7719800 0 0 0 0 0 0 0 0 0 0 0 0 36359 3253 38208 192327;192328 195455;195456 195455 2 VLDAIIQEK EEAKSSLAMNRSRGKVLDAIIQEKKSGRIP NRSRGKVLDAIIQEKKSGRIPGIYGRLGDL K V L E K K 1 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1027.5914 Q9NTJ3;E9PD53 Q9NTJ3 599 607 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2 0.00075813 99.802 By MS/MS By MS/MS By matching 2 2 1 0.98596 0.93995 22.816 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81173 0.8213 35.301 2 0 Median 1.0929 0.94915 1.3782 2 0 Median 0.61997 0.66764 NaN 1 0 Median NaN NaN NaN 0 0 Median 26615000 13870000 12745000 0 0 0 0 0 0 11551000 5897800 5653600 9203000 4201900 5001200 5860800 3770800 2090100 0 0 0 36360 4108 38209 192329;192330;192331;192332;192333 195457;195458;195459;195460 195457 4 VLDASWYSPGTR LAESIRTGKLGPGLRVLDASWYSPGTREAR GLRVLDASWYSPGTREARKEYLERHVPGAS R V L T R E 1 1 0 1 0 0 0 1 0 0 1 0 0 0 1 2 1 1 1 1 0 0 12 0 1350.6568 Q16762;B1AH48 Q16762 31 42 TST Thiosulfate sulfurtransferase yes no 2 1.427E-05 122.26 By MS/MS By MS/MS 1 1 0.72158 0.63625 28.12 2 Median 0.55788 0.52152 NaN 1 0 Median 0.9333 0.77621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42020000 25682000 16338000 32879000 21048000 11831000 9141000 4634000 4507100 0 0 0 0 0 0 0 0 0 0 0 0 36361 2996 38210 192334;192335 195461;195462 195461 2 VLDDGELLVQQTK YIMNGIIKWGDPVTRVLDDGELLVQQTKNS TRVLDDGELLVQQTKNSDRTPLVSVLLEGP R V L T K N 0 0 0 2 0 2 1 1 0 0 3 1 0 0 0 0 1 0 0 2 0 0 13 0 1456.7773 I3L0N3;P46459 I3L0N3 512 524 NSF Vesicle-fusing ATPase yes no 2 8.6913E-07 126.71 By MS/MS By MS/MS 1 1 1.0453 1.0128 6.4015 2 Median 1.0961 0.96802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99675 1.0597 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36442000 18073000 18369000 32655000 16152000 16502000 0 0 0 3787500 1920900 1866600 0 0 0 0 0 0 0 0 0 36362 1272 38211 192336;192337 195463;195464;195465 195464 3 VLDDVSIR SDPSHTTNKLYPKDRVLDDVSIRSPETKCP KLYPKDRVLDDVSIRSPETKCPKQNSIEND R V L I R S 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 8 0 915.50255 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1292 1299 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0034992 92.491 By MS/MS By MS/MS 1 2 1.4071 1.2347 14.152 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92795 0.97536 NaN 1 0 Median 1.425 1.2457 1.2518 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22709000 10563000 12146000 0 0 0 0 0 0 18100000 8605500 9494300 4609400 1957900 2651500 0 0 0 0 0 0 36363 2762 38212 192338;192339;192340 195466;195467;195468 195466 3 VLDELKHYYHGFR SPPAEVVVKKSLGQRVLDELKHYYHGFRLL QRVLDELKHYYHGFRLLWIDTKIAARMLWR R V L F R L 0 1 0 1 0 0 1 1 2 0 2 1 0 1 0 0 0 0 2 1 0 0 13 1 1675.8471 O95202 O95202 157 169 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 4 0.0012734 41.052 By MS/MS 1 1.0401 1.0671 NaN 1 Median 1.0401 1.0671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6086800 2764000 3322800 6086800 2764000 3322800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36364 1754 38213 192341 195469;195470 195470 2 VLDELTLAR ALRLSVEADINGLRRVLDELTLARADLEMQ INGLRRVLDELTLARADLEMQIENLKEELA R V L A R A 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 9 0 1028.5866 CON__P08779;P08779;A8MT21;C9JTG5;P02533;CON__P02533;CON__Q04695;Q04695;F5GWP8;K7EPJ9;CON__Q6IFX2;CON__P08727;P08727;K7EMS3;C9JM50;CON__P19001 CON__Q04695 193 201 KRT16;KRT15;KRT14;KRT17;KRT19 Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 6.405E-12 174.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 8 6 8 4 12.925 10.471 126.64 38 Linear 0.22651 0.22622 124.08 5 4 Median 0.18637 0.15759 168.78 7 4 Median 0.30654 0.30487 147.75 8 3 Median 0.11756 0.10033 116.05 6 1 Median 0.1689 0.17145 114.7 8 2 Median 1.0547 0.84952 87.557 4 0 Linear 1328300000 805470000 522790000 104600000 67458000 37139000 38623000 30715000 7908600 585220000 330970000 254250000 161090000 103580000 57511000 334610000 213090000 121530000 104120000 59663000 44456000 + 36365 768;739;752;754;787;760 38214 192342;192343;192344;192345;192346;192347;192348;192349;192350;192351;192352;192353;192354;192355;192356;192357;192358;192359;192360;192361;192362;192363;192364;192365;192366;192367;192368;192369;192370;192371;192372;192373;192374;192375;192376;192377;192378;192379;192380 195471;195472;195473;195474;195475;195476;195477;195478;195479;195480;195481;195482;195483;195484;195485;195486;195487;195488;195489;195490;195491;195492;195493;195494;195495;195496;195497;195498;195499;195500;195501;195502;195503;195504;195505;195506;195507;195508;195509;195510;195511;195512;195513;195514;195515;195516;195517;195518 195473 48 VLDELTLSK TLRQSVEADINGLRRVLDELTLSKSDLEMQ INGLRRVLDELTLSKSDLEMQIESLNEELA R V L S K S 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 9 0 1016.5754 K7ERE3;CON__ENSEMBL:ENSP00000377550;P13646;CON__P13646-1;K7EMD9;CON__P02535-1 CON__P02535-1 256 264 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.043534 45.68 By MS/MS 1 0.054756 0.050596 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.054756 0.050596 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 490410 454020 36391 0 0 0 0 0 0 0 0 0 490410 454020 36391 0 0 0 0 0 0 + 36366 740;736 38215 192381 195519 195519 1 VLDELTLTK ALRQSVEADINGLRRVLDELTLTKADLEMQ INGLRRVLDELTLTKADLEMQIESLTEELA R V L T K A 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 9 0 1030.591 P13645;CON__P13645 P13645 258 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 8.7714E-08 136.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 7 10 12 7 3 0.018344 0.019121 140.65 47 Median 0.0062043 0.0058997 125.87 9 9 Median 0.011302 0.009266 160.27 7 7 Median 0.037766 0.038427 123.01 10 10 Median 0.018344 0.016575 135.8 11 11 Median 0.030569 0.030743 95.083 7 7 Median 0.064724 0.053025 129.84 3 3 Median 4004600000 3852500000 152080000 1083500000 1069600000 13940000 680970000 675580000 5390100 702660000 645150000 57502000 622630000 599610000 23015000 815850000 770110000 45737000 98926000 92426000 6499900 + 36367 756 38216 192382;192383;192384;192385;192386;192387;192388;192389;192390;192391;192392;192393;192394;192395;192396;192397;192398;192399;192400;192401;192402;192403;192404;192405;192406;192407;192408;192409;192410;192411;192412;192413;192414;192415;192416;192417;192418;192419;192420;192421;192422;192423;192424;192425;192426;192427;192428;192429;192430;192431 195520;195521;195522;195523;195524;195525;195526;195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538;195539;195540;195541;195542;195543;195544;195545;195546;195547;195548;195549;195550;195551;195552;195553;195554;195555;195556;195557;195558;195559;195560;195561;195562;195563;195564;195565;195566;195567;195568;195569;195570;195571;195572;195573;195574;195575;195576;195577;195578 195544 59 VLDETAR GIKALYESELADARRVLDETARERARLQIE SELADARRVLDETARERARLQIEIGKLRAE R V L A R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 7 0 802.41848 Q03252 Q03252 106 112 LMNB2 Lamin-B2 yes yes 2 0.038095 46.016 By matching By matching By MS/MS 1 1 2 1.4354 1.4675 32.34 4 Linear 1.6641 1.6858 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99955 1.0576 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82437 0.85342 6.8598 2 0 Median NaN NaN NaN 0 0 Median 6342900 3150000 3192900 2206200 1036400 1169800 0 0 0 1721500 907470 814050 0 0 0 2415100 1206100 1209000 0 0 0 36368 2709 38217 192432;192433;192434;192435 195579 195579 1 VLDEYEEEKR PAVKHRKKSLIRLDKVLDEYEEEKRHLQEM IRLDKVLDEYEEEKRHLQEMANSLPHFKDG K V L K R H 0 1 0 1 0 0 4 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 10 1 1308.6198 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 1476 1485 SYNE2 Nesprin-2 yes no 2;3 8.569E-05 83 By matching By MS/MS By MS/MS 1 2 2 1.1985 1.1388 15.952 4 Median NaN NaN NaN 0 0 Median 1.135 1.1001 NaN 1 0 Median 0.75164 0.86853 NaN 1 0 Median 1.3027 1.2134 4.0751 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4381500 2159700 2221800 0 0 0 1439500 756320 683210 2013900 997510 1016400 928040 405840 522190 0 0 0 0 0 0 36369 3521 38218 192436;192437;192438;192439;192440 195580;195581;195582;195583;195584 195581 4 VLDFDVK HLADGPFAVLVDYIRVLDFDVKRKYFRQEL AVLVDYIRVLDFDVKRKYFRQELERLDEGL R V L V K R 0 0 0 2 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 7 0 834.44872 Q7Z6Z7;H0Y659 Q7Z6Z7 3991 3997 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.016244 69.176 By MS/MS By MS/MS By matching 2 4 1 1.2054 1.071 34.044 7 Median 1.0473 1.0174 7.2681 2 0 Median 1.4199 1.2952 14.915 4 0 Median NaN NaN NaN 0 0 Median 0.43913 0.5291 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15893000 7347800 8545100 8642700 4094300 4548400 6931400 3049200 3882200 0 0 0 318790 204200 114590 0 0 0 0 0 0 36370 3253 38219 192441;192442;192443;192444;192445;192446;192447 195585;195586;195587;195588 195586 4 VLDFEHFLPMLQTVAK LKVLGNPKSDEMNVKVLDFEHFLPMLQTVA LDFEHFLPMLQTVAKNKDQGTYEDYVEGLR K V L A K N 1 0 0 1 0 1 1 0 1 0 3 1 1 2 1 0 1 0 0 2 0 0 16 0 1886.9964 F8W1R7;G3V1V0;P60660;J3KND3;G8JLA2;B7Z6Z4;G3V1Y7;F8VPF3;F8VZU9;F8W180 F8W1R7 64 79 MYL6 Myosin light polypeptide 6 yes no 2 1.1198E-09 100.55 By matching By MS/MS 1 1 0.89981 0.81931 1.0765 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81916 0.82557 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9884 0.8131 NaN 1 0 Median 3769900 1877300 1892600 0 0 0 0 0 0 260020 150180 109840 0 0 0 0 0 0 3509800 1727100 1782700 36371 1082 38220 192448;192449 195589 195589 1 VLDGPEKVPVVHVDEK KLQTNRDGAASLSYRVLDGPEKVPVVHVDE LDGPEKVPVVHVDEKGFLASGSMIGTSTIE R V L E K G 0 0 0 2 0 0 2 1 1 0 1 2 0 0 2 0 0 0 0 5 0 0 16 1 1758.9516 Q8TEM1 Q8TEM1 1322 1337 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3;4 2.5049E-05 75.574 By matching By MS/MS By matching 2 3 2 0.9899 0.92317 21.726 7 Median 1.0535 1.1015 8.1373 2 0 Median NaN NaN NaN 0 0 Median 0.58478 0.67732 7.9952 3 0 Median 1.0144 0.9454 3.3657 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46116000 27017000 19099000 7289000 3369000 3920000 0 0 0 37488000 23025000 14462000 1339000 622220 716810 0 0 0 0 0 0 36372 3477 38221 192450;192451;192452;192453;192454;192455;192456 195590;195591;195592 195592 3 VLDIIYQPQAIFR SLGKTLESQAVETEKVLDIIYQPQAIFRVR EKVLDIIYQPQAIFRVRAVTRCTSSLEGHS K V L F R V 1 1 0 1 0 2 0 0 0 3 1 0 0 1 1 0 0 0 1 1 0 0 13 0 1574.8821 Q9NVX2;A0A0A0MRH0;K7ERN7 Q9NVX2 87 99 NLE1 Notchless protein homolog 1 yes no 2 4.6155E-05 89.247 By MS/MS By MS/MS By matching By MS/MS By matching 1 2 2 1 2 1.089 1.0194 29.168 8 Median 1.2007 1.1936 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97365 0.99231 5.9642 2 1 Median 1.1635 1.0194 1.697 2 0 Median 0.85172 0.85826 NaN 1 0 Median 0.86308 0.76203 64.746 2 0 Median 10760000 5456600 5303300 1692400 785420 907020 0 0 0 5125600 2547800 2577800 548440 239360 309080 3029100 1644400 1384600 364290 239600 124690 36373 4142 38222 192457;192458;192459;192460;192461;192462;192463;192464 195593;195594;195595;195596;195597;195598;195599 195597 7 VLDILLEQYPALITGR AMTHITEGIQEDSLKVLDILLEQYPALITG LDILLEQYPALITGRSSILLKNFVELISHQ K V L G R S 1 1 0 1 0 1 1 1 0 2 4 0 0 0 1 0 1 0 1 1 0 0 16 0 1813.0349 Q9NXF1 Q9NXF1 163 178 TEX10 Testis-expressed sequence 10 protein yes yes 2 1.7155E-05 84.289 By matching By matching By MS/MS 1 1 1 1.1053 1.0443 2.4028 3 Median NaN NaN NaN 0 0 Median 1.1053 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2873 1.0607 NaN 1 0 Median 0.99636 1.0443 NaN 1 0 Median NaN NaN NaN 0 0 Median 5307300 2517600 2789800 0 0 0 582000 293110 288900 0 0 0 110010 45198 64814 4615300 2179300 2436100 0 0 0 36374 4163 38223 192465;192466;192467 195600;195601 195601 2 VLDLDLFR ______________________________ ______________________________ M V L F R V 0 1 0 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 1 0 0 8 0 989.55458 Q5T5C7;P49591 Q5T5C7 2 9 SARS Serine--tRNA ligase, cytoplasmic yes no 2 0.044676 35.88 By matching By MS/MS By matching 2 1 1 1.2889 1.1107 15.011 4 Median NaN NaN NaN 0 0 Median 1.2101 1.032 1.7708 2 0 Median 1.3417 1.4158 NaN 1 0 Median 1.3356 1.1804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20985000 9093300 11892000 0 0 0 19619000 8509000 11110000 1277900 545770 732150 88803 38526 50278 0 0 0 0 0 0 36375 2387 38224 192468;192469;192470;192471 195602;195603 195602 2 VLDLELK VFQKYTKYSKHDMNKVLDLELKGDIEKCLT YSKHDMNKVLDLELKGDIEKCLTAIVKCAT K V L L K G 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 P04083 P04083 251 257 ANXA1 Annexin A1 yes yes 2 0.020048 60.799 By MS/MS By matching By matching 2 1 1 1.406 1.0997 27.423 4 Linear 1.0265 0.97922 45.863 2 0 Median 1.252 1.0672 NaN 1 0 Median 1.1789 1.1332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29494000 12879000 16616000 13118000 5487700 7630000 9043600 4153700 4890000 7333100 3237400 4095700 0 0 0 0 0 0 0 0 0 36376 1844 38225 192472;192473;192474;192475 195604;195605 195605 2 VLDLELKGDIEK VFQKYTKYSKHDMNKVLDLELKGDIEKCLT MNKVLDLELKGDIEKCLTAIVKCATSKPAF K V L E K C 0 0 0 2 0 0 2 1 0 1 3 2 0 0 0 0 0 0 0 1 0 0 12 1 1370.7657 P04083 P04083 251 262 ANXA1 Annexin A1 yes yes 2;3 1.5609E-06 154.24 By MS/MS By MS/MS By MS/MS By matching 2 4 2 1 1.2724 1.22 15.115 9 Median 1.4309 1.3246 3.5951 2 0 Median 1.2702 1.1438 8.8026 4 0 Median 1.2996 1.3628 15.654 2 0 Median 1.0257 0.91331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 90128000 35934000 54194000 54077000 20364000 33713000 29692000 12887000 16805000 6012100 2502200 3509900 346480 180830 165650 0 0 0 0 0 0 36377 1844 38226 192476;192477;192478;192479;192480;192481;192482;192483;192484 195606;195607;195608;195609;195610;195611 195609 6 VLDLHKKPFLAK VDKVEIGKTVKAYVRVLDLHKKPFLAKYFP YVRVLDLHKKPFLAKYFPFMDLKLRAASPI R V L A K Y 1 0 0 1 0 0 0 0 1 0 3 3 0 1 1 0 0 0 0 1 0 0 12 2 1407.8602 Q8TEM1 Q8TEM1 1001 1012 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.050879 17.211 By MS/MS 1 0.75749 0.94048 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75749 0.94048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2801200 1756700 1044500 0 0 0 0 0 0 2801200 1756700 1044500 0 0 0 0 0 0 0 0 0 36378 3477 38227 192485 195612;195613 195612 2 VLDLLDPASGDLVIR ALSVTMSYLEIYQEKVLDLLDPASGDLVIR VLDLLDPASGDLVIREDCRGNILIPGLSQK K V L I R E 1 1 0 3 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 2 0 0 15 0 1594.893 Q14807;H3BRB3;H3BTH5 Q14807 184 198 KIF22 Kinesin-like protein KIF22;Kinesin-like protein yes no 2 0.00022155 73.067 By MS/MS By matching By matching 2 1 1 0.86452 0.83519 9.6122 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86701 0.89584 10.236 2 0 Median 0.9584 0.83709 NaN 1 0 Median 0.75937 0.76332 NaN 1 0 Median NaN NaN NaN 0 0 Median 2784600 1596000 1188600 0 0 0 0 0 0 2509600 1445600 1064000 70074 40885 29189 204910 109520 95390 0 0 0 36379 1228 38228 192486;192487;192488;192489 195614;195615 195615 2 VLDLQQIK DEVDKRVHMTWVQPRVLDLQQIKGMKDRLE MTWVQPRVLDLQQIKGMKDRLEFWCTDVKS R V L I K G 0 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 955.57023 Q9UNM6;J3KNQ3 Q9UNM6 340 347 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2 0.0034744 94.006 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.2995 1.1139 12.91 5 Median 1.1653 1.0733 NaN 1 0 Median 1.2995 1.1139 NaN 1 0 Median 1.3327 1.3776 NaN 1 0 Median 1.358 1.145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.171 0.9666 NaN 1 0 Median 47739000 21470000 26269000 30313000 13786000 16527000 4306900 1849800 2457100 10091000 4474600 5616300 1024100 439640 584490 0 0 0 2004200 919850 1084400 36380 4345 38229 192490;192491;192492;192493;192494 195616;195617;195618 195616 3 VLDMENSFK SHKGDLRFVTISGQKVLDMENSFKEGKEPS TISGQKVLDMENSFKEGKEPSEIGNLVKDK K V L F K E 0 0 1 1 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 9 0 1081.5114 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 3944 3952 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.0028118 69.423 By MS/MS By MS/MS By matching 1 1 1 1.0279 1.0206 4.3916 3 Median 1.0279 1.0206 NaN 1 1 Median 1.1289 0.98444 NaN 1 0 Median 0.99348 1.0743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11871000 5708600 6162400 3766200 1552800 2213400 4334700 2023400 2311300 3770100 2132400 1637700 0 0 0 0 0 0 0 0 0 36381 1220 38230 192495;192496;192497 195619;195620 195620 2 VLDMPTQELGLPAYR SLQMEILTELGLHFRVLDMPTQELGLPAYR VLDMPTQELGLPAYRKFDIEAWMPGRGRFG R V L Y R K 1 1 0 1 0 1 1 1 0 0 3 0 1 0 2 0 1 0 1 1 0 0 15 0 1701.876 M0QWZ7;M0R2C6;Q9NP81;M0R259;M0QX29 M0QWZ7 388 402 SARS2 Serine--tRNA ligase, mitochondrial yes no 2 0.00034105 65.347 By MS/MS By matching 1 1 0.81665 0.82779 30.388 2 Median 0.6693 0.66773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99644 1.0262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3558200 2638000 920210 3012300 2305000 707360 0 0 0 545850 333000 212850 0 0 0 0 0 0 0 0 0 36382 1407 38231 192498;192499 195621;195622 195621 2 VLDNAIETEK SKMKALAVEGKRIGKVLDNAIETEKMIEKY KRIGKVLDNAIETEKMIEKYESLASDLLEW K V L E K M 1 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1130.5819 Q01082;A0A087WUZ3;F8W6C1 Q01082 293 302 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 8.1206E-05 133.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1 2 1.1669 1.0256 21.041 10 Median 1.3176 1.2675 NaN 1 0 Median 1.2471 1.1096 2.6134 2 0 Median 0.69231 0.74745 22.181 2 0 Median 1.1198 1.0415 21.632 2 0 Median 0.92226 0.96555 NaN 1 0 Median 1.2922 1.0868 19.141 2 0 Median 136200000 65771000 70432000 4225300 1701200 2524100 37965000 16025000 21940000 55099000 29524000 25575000 14360000 7101300 7259000 12412000 6028000 6383500 12141000 5390900 6750000 36383 2681 38232 192500;192501;192502;192503;192504;192505;192506;192507;192508;192509 195623;195624;195625;195626;195627;195628;195629;195630;195631;195632;195633;195634;195635;195636;195637;195638;195639 195629 17 VLDNAMNSNVTVVSR NHVSSLPPFIAPPGRVLDNAMNSNVTVVSR VLDNAMNSNVTVVSRVNHVFSQGVQVNPGL R V L S R V 1 1 3 1 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 4 0 0 15 0 1617.8145 Q8NEZ4;H7BY37 Q8NEZ4 2964 2978 KMT2C Histone-lysine N-methyltransferase 2C yes no 2 6.802E-10 160.15 By MS/MS By matching 1 1 0.76064 0.72798 16.359 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77458 0.81726 NaN 1 0 Median 0.74695 0.64846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11510000 6393700 5116500 0 0 0 0 0 0 11081000 6197800 4883600 428720 195880 232830 0 0 0 0 0 0 36384 3431 38233 192510;192511 195640;195641 195641 2 VLDNYLTSPLPEEVDETSAEDEGVSQR ALNDNLEKGLLKALKVLDNYLTSPLPEEVD EVDETSAEDEGVSQRKFLDGNELTLADCNL K V L Q R K 1 1 1 3 0 1 5 1 0 0 3 0 0 0 2 3 2 0 1 3 0 0 27 0 2991.3833 O00299 O00299 139 165 CLIC1 Chloride intracellular channel protein 1 yes yes 3 0.011832 16.977 By MS/MS By matching By MS/MS 2 1 1 0.71406 0.64809 5.8843 4 Median 0.71406 0.67636 5.3143 2 0 Median 0.75501 0.64478 NaN 1 0 Median 0.62001 0.60854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10944000 5658300 5285800 7711900 4051100 3660900 687180 370080 317100 2545000 1237100 1307900 0 0 0 0 0 0 0 0 0 36385 1456 38234 192512;192513;192514;192515 195642;195643 195643 2 VLDNYLTSPLPEEVDETSAEDEGVSQRK ALNDNLEKGLLKALKVLDNYLTSPLPEEVD VDETSAEDEGVSQRKFLDGNELTLADCNLL K V L R K F 1 1 1 3 0 1 5 1 0 0 3 1 0 0 2 3 2 0 1 3 0 0 28 1 3119.4782 O00299 O00299 139 166 CLIC1 Chloride intracellular channel protein 1 yes yes 3 6.6744E-09 39.783 By MS/MS By MS/MS 2 1 0.76563 0.71859 46.743 3 Median 0.51714 0.53104 61.318 2 0 Median 0.76563 0.71859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9171300 5636300 3535000 8127100 5185200 2941900 1044200 451180 593030 0 0 0 0 0 0 0 0 0 0 0 0 36386 1456 38235 192516;192517;192518 195644;195645;195646;195647 195645 4 VLDPASSDFTR DTQLVNSLLEKASEKVLDPASSDFTRLSVL ASEKVLDPASSDFTRLSVLDLVVALAPCAD K V L T R L 1 1 0 2 0 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1206.5881 Q5JTH9 Q5JTH9 740 750 RRP12 RRP12-like protein yes yes 2 0.00011205 136.57 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0388 0.96479 170.71 5 Median 20.426 42.68 NaN 1 0 Median 1.3533 1.1348 NaN 1 0 Median 0.76626 0.84273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93865 0.96479 NaN 1 0 Median 1.0388 0.87098 NaN 1 0 Median 30112000 12955000 17157000 3233600 311580 2922000 8022600 2632600 5389900 7285100 3765500 3519500 0 0 0 10683000 5843700 4839000 887740 401200 486540 36387 3052 38236 192519;192520;192521;192522;192523 195648;195649;195650;195651;195652 195650 5 VLDPEKQADMLDSLR EGDNPESITSVFITKVLDPEKQADMLDSLR VLDPEKQADMLDSLRIYLLQYATLLVEHAP K V L L R I 1 1 0 3 0 1 1 0 0 0 3 1 1 0 1 1 0 0 0 1 0 0 15 1 1728.8716 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 1796 1810 TRRAP Transformation/transcription domain-associated protein yes no 3 1.0056E-06 90.707 By MS/MS 1 0.88701 1.0287 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88701 1.0287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12685000 6670700 6014100 0 0 0 0 0 0 12685000 6670700 6014100 0 0 0 0 0 0 0 0 0 36388 991 38237 192524 195653;195654 195654 2 VLDPFTIKPLDR LAAAELLKKEKINIRVLDPFTIKPLDRKLI NIRVLDPFTIKPLDRKLILDSARATKGRIL R V L D R K 0 1 0 2 0 0 0 0 0 1 2 1 0 1 2 0 1 0 0 1 0 0 12 1 1412.8028 P29401;A0A0B4J1R6 P29401 531 542 TKT Transketolase yes no 2;3 0.00011989 96.89 By MS/MS By MS/MS By MS/MS By matching 8 4 3 2 0.84725 0.80256 51.197 17 Median 0.78873 0.79658 24.19 8 0 Median 0.94153 0.88319 100.19 4 0 Median 0.7874 0.8367 30.639 3 0 Median 0.92593 0.84899 7.953 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127810000 69168000 58639000 84966000 47790000 37176000 26095000 11798000 14297000 16186000 9290800 6895300 559940 288910 271030 0 0 0 0 0 0 36389 2173 38238 192525;192526;192527;192528;192529;192530;192531;192532;192533;192534;192535;192536;192537;192538;192539;192540;192541 195655;195656;195657;195658;195659;195660;195661;195662;195663;195664;195665 195659 11 VLDPFTIKPLDRK LAAAELLKKEKINIRVLDPFTIKPLDRKLI IRVLDPFTIKPLDRKLILDSARATKGRILT R V L R K L 0 1 0 2 0 0 0 0 0 1 2 2 0 1 2 0 1 0 0 1 0 0 13 2 1540.8977 P29401;A0A0B4J1R6 P29401 531 543 TKT Transketolase yes no 3 0.00055254 50.563 By MS/MS By MS/MS 3 1 0.73666 0.79091 19.411 4 Median 0.67095 0.71442 14.362 3 0 Median NaN NaN NaN 0 0 Median 0.89122 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32103000 17968000 14136000 29201000 16352000 12850000 0 0 0 2902200 1616100 1286100 0 0 0 0 0 0 0 0 0 36390 2173 38239 192542;192543;192544;192545 195666;195667;195668;195669 195667 2 VLDQYIFELSR KLPMNKDVCDEGNTKVLDQYIFELSRKTQI GNTKVLDQYIFELSRKTQIPEVFLTKILES K V L S R K 0 1 0 1 0 1 1 0 0 1 2 0 0 1 0 1 0 0 1 1 0 0 11 0 1381.7242 CON__Q3MHN5 CON__Q3MHN5 341 351 no no 2 0.0037773 71.349 By MS/MS 1 0.2457 0.238 NaN 1 Median 0.2457 0.238 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7260700 5227000 2033800 7260700 5227000 2033800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 36391 776 38240 192546 195670 195670 1 VLDSFCEGLK DAILGNPKVKAHGKKVLDSFCEGLKQLDDL AHGKKVLDSFCEGLKQLDDLKGAFASLSEL K V L L K Q 0 0 0 1 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1166.5642 CON__Q3SX09 CON__Q3SX09 122 131 yes yes 2 0.0018447 79.906 By MS/MS By MS/MS 1 1 0.12871 0.11585 29.49 2 Median NaN NaN NaN 0 0 Median 0.17132 0.14271 NaN 1 1 Median 0.096694 0.094044 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6661200 6055100 606140 0 0 0 2583000 2231700 351320 4078200 3823400 254820 0 0 0 0 0 0 0 0 0 + 36392 777 38241 192547;192548 195671;195672 195672 2 VLDSGAPIK TIAMDGTEGLVRGQKVLDSGAPIKIPVGPE LVRGQKVLDSGAPIKIPVGPETLGRIMNVI K V L I K I 1 0 0 1 0 0 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 898.51238 P06576;H0YH81;F8W079 P06576 125 133 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 0.0012859 83.206 By MS/MS By MS/MS 1 1 1.1445 1.0298 4.0248 2 Median 1.1084 1.0595 NaN 1 0 Median 1.1817 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18108000 8021300 10086000 3179300 1368300 1811000 14928000 6653000 8275200 0 0 0 0 0 0 0 0 0 0 0 0 36393 1872 38242 192549;192550 195673;195674;195675 195674 3 VLDSGAPIKIPVGPETLGR TIAMDGTEGLVRGQKVLDSGAPIKIPVGPE GAPIKIPVGPETLGRIMNVIGEPIDERGPI K V L G R I 1 1 0 1 0 0 1 3 0 2 2 1 0 0 3 1 1 0 0 2 0 0 19 1 1918.0888 P06576;H0YH81;F8W079 P06576 125 143 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 3 2.1402E-07 66.779 By MS/MS 1 0.59785 0.59363 NaN 1 Median 0.59785 0.59363 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64801000 43176000 21625000 64801000 43176000 21625000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36394 1872 38243 192551 195676;195677 195677 2 VLDSYGDDYR RITRRLQQERRFLMRVLDSYGDDYRASQFT RFLMRVLDSYGDDYRASQFTIVLEDEGSQG R V L Y R A 0 1 0 3 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1201.5251 P0C1Z6;A0A0G2JP55;A8MTQ3 P0C1Z6 123 132 TFPT TCF3 fusion partner yes no 2 0.0040128 68.735 By MS/MS By MS/MS 1 1 1.1832 1.0764 21.254 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2663 1.2509 NaN 1 0 Median 1.1055 0.92617 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4360100 2200000 2160100 0 0 0 0 0 0 3355400 1659900 1695400 1004700 540060 464660 0 0 0 0 0 0 36395 1926 38244 192552;192553 195678;195679 195679 2 VLEAAAQAAR LLEMDARLHEDHLERVLEAAAQAARDVHTL DHLERVLEAAAQAARDVHTLLDRVVRQHVR R V L A R D 5 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 998.55089 Q9NPD3;E9PI41 Q9NPD3 213 222 EXOSC4 Exosome complex component RRP41 yes no 2 0.00035707 92.439 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1966 1.0433 6.974 5 Median 1.1966 1.1341 NaN 1 1 Median 1.3425 1.1351 NaN 1 0 Median 1.0867 1.0433 NaN 1 0 Median 1.239 1.0278 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1875 0.96408 NaN 1 0 Median 67179000 29928000 37251000 9825300 4165600 5659700 4666700 1894600 2772100 47225000 21552000 25673000 3969400 1602100 2367300 0 0 0 1493000 713660 779320 36396 4046 38245 192554;192555;192556;192557;192558 195680;195681;195682;195683;195684 195683 5 VLEAAVAAK GATILTHAYSRVVLRVLEAAVAAKKRFSVY SRVVLRVLEAAVAAKKRFSVYVTESQPDLS R V L A K K 4 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 870.51747 Q14232;F5H0D0 Q14232 137 145 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes no 2 0.00097881 87.323 By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 1.1833 1.0535 37.257 6 Median 1.2097 1.1189 NaN 1 0 Median 1.2496 1.0766 3.2246 2 0 Median 1.0967 1.0547 NaN 1 0 Median 1.1574 0.97484 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51254 0.4285 NaN 1 0 Median 32892000 15228000 17665000 10807000 5388200 5419200 16105000 6816500 9288400 2007000 1101700 905280 3362200 1612200 1750000 0 0 0 611010 309370 301640 36397 2866 38246 192559;192560;192561;192562;192563;192564 195685;195686;195687 195687 3 VLEAEVLALK TAIRTEEEKRLMEQKVLEAEVLALKMAEES LMEQKVLEAEVLALKMAEESERRAKEADQL K V L L K M 2 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 10 0 1083.654 P35240 P35240 430 439 NF2 Merlin yes yes 2 0.0007807 71.379 By MS/MS By matching 1 1 1.096 1.1428 19.062 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94339 0.99873 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2734 1.3077 NaN 1 0 Median NaN NaN NaN 0 0 Median 5484700 2598200 2886400 0 0 0 0 0 0 4774300 2250200 2524100 0 0 0 710400 348050 362350 0 0 0 36398 2234 38247 192565;192566 195688;195689 195689 2 VLEALLPLK ICFFVQQFTDMEHNRVLEALLPLKGLEERV DMEHNRVLEALLPLKGLEERVAAAVDLIIK R V L L K G 1 0 0 0 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 1 0 0 9 0 994.64267 P49327;A0A0U1RQF0 P49327 2383 2391 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.015787 43.246 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 4 2 1 1 2 1.1791 1.0704 22.299 15 Median 0.90592 0.86982 26.405 5 0 Median 1.3405 1.1867 9.2118 4 0 Linear 1.1811 1.3051 12.95 2 0 Median 1.2181 1.098 NaN 1 0 Median 1.7733 1.8147 NaN 1 0 Median 1.2311 1.0452 8.7554 2 0 Median 73839000 35345000 38493000 38017000 19828000 18189000 31602000 13459000 18143000 2820900 1498700 1322200 160700 81008 79689 461070 139000 322070 777290 339610 437680 36399 2377 38248 192567;192568;192569;192570;192571;192572;192573;192574;192575;192576;192577;192578;192579;192580;192581 195690;195691;195692;195693;195694;195695;195696 195690 7 VLEALLPLKGLEER ICFFVQQFTDMEHNRVLEALLPLKGLEERV RVLEALLPLKGLEERVAAAVDLIIKSHQGL R V L E R V 1 1 0 0 0 0 3 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 14 1 1578.9345 P49327;A0A0U1RQF0 P49327 2383 2396 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 3.7295E-08 120.96 By MS/MS By matching By matching 6 2 2 1.0209 1.0517 20.289 10 Median 0.95935 0.98816 8.6189 6 2 Median 1.5528 1.5233 3.2542 2 0 Median 0.99243 1.1589 26.904 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50165000 25564000 24602000 47719000 24560000 23159000 1662500 678120 984410 783690 325820 457870 0 0 0 0 0 0 0 0 0 36400 2377 38249 192582;192583;192584;192585;192586;192587;192588;192589;192590;192591 195697;195698;195699;195700;195701;195702;195703;195704;195705 195704 9 VLEAMTER SALCILPQPEDMNERVLEAMTERAEMDEVE PEDMNERVLEAMTERAEMDEVERFQPLLDG R V L E R A 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 8 0 947.47462 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 279 286 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.0034335 96.492 By MS/MS By MS/MS 1 1 1.2404 1.0362 NaN 1 Median NaN NaN NaN 0 0 Median 1.2404 1.0362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11801000 5265600 6535600 0 0 0 11801000 5265600 6535600 0 0 0 0 0 0 0 0 0 0 0 0 36401 274 38250 192592;192593 195706;195707;195708 195707 3 VLEAVSANPGR PMWAEPIHDLDFVGRVLEAVSANPGRFHTS FVGRVLEAVSANPGRFHTSERIRGVLSVIT R V L G R F 2 1 1 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 0 1111.5986 Q9NXH9 Q9NXH9 411 421 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase yes yes 2 0.00021132 98.033 By matching By MS/MS 1 1 1.0552 0.98042 4.6645 2 Median 1.0174 1.0133 NaN 1 0 Median 1.0943 0.94861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3404400 1587700 1816600 841090 383080 458010 2563300 1204700 1358600 0 0 0 0 0 0 0 0 0 0 0 0 36402 4166 38251 192594;192595 195709;195710 195710 2 VLEDEEGSK AVKAALFNTRIPRVRVLEDEEGSKDIELSD RIPRVRVLEDEEGSKDIELSDDPYDCIRLS R V L S K D 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1004.4662 Q15024 Q15024 170 178 EXOSC7 Exosome complex component RRP42 yes yes 2 0.016483 42.599 By matching By matching By MS/MS 1 1 1 1.2152 1.0287 4.0088 3 Median 1.0153 1.0104 NaN 1 0 Median 1.2152 1.0287 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2799 1.0909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1681300 787590 893710 457900 226810 231090 300370 153500 146870 0 0 0 923020 407280 515750 0 0 0 0 0 0 36403 2916 38252 192596;192597;192598 195711 195711 1 VLEDGKQQVQVVGLQER SGKVFDLLNRKTKLRVLEDGKQQVQVVGLQ EDGKQQVQVVGLQEREVKCVEDVLKLIDIG R V L E R E 0 1 0 1 0 4 2 2 0 0 2 1 0 0 0 0 0 0 0 4 0 0 17 1 1924.0378 O00139;H0Y8H2 O00139 386 402 KIF2A Kinesin-like protein KIF2A yes no 3 7.4769E-06 74.786 By MS/MS 2 0.9838 1.0004 17.92 2 Median 0.9838 1.0004 17.92 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14911000 7380500 7530200 14911000 7380500 7530200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36404 1440 38253 192599;192600 195712;195713;195714 195713 2 VLEDSDLK LNMDLFRSTMKPVQKVLEDSDLKKSDIDEI TMKPVQKVLEDSDLKKSDIDEIVLVGGSTR K V L L K K 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 8 0 917.47058 P11021 P11021 345 352 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.0055542 75.109 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.2592 1.1194 12.893 4 Median 1.172 1.0857 8.893 2 0 Median 1.3056 1.0839 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6043 1.3746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82517000 36678000 45839000 21700000 10413000 11287000 59578000 25818000 33761000 0 0 0 1238900 447700 791240 0 0 0 0 0 0 36405 1948 38254 192601;192602;192603;192604;192605 195715;195716;195717;195718;195719;195720;195721;195722 195715 8 VLEDSDLKK LNMDLFRSTMKPVQKVLEDSDLKKSDIDEI MKPVQKVLEDSDLKKSDIDEIVLVGGSTRI K V L K K S 0 0 0 2 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 9 1 1045.5655 P11021 P11021 345 353 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.0031219 73.665 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 2 1.0702 1.1163 10.538 8 Median 1.0611 1.053 18.443 2 0 Median 1.1873 1.1278 4.4504 2 0 Median 1.0099 1.1402 NaN 1 0 Median 1.0817 1.0567 NaN 1 0 Median 0.93224 1.0451 17.641 2 0 Median NaN NaN NaN 0 0 Median 27860000 12902000 14958000 4612100 2222300 2389800 17996000 8058600 9937900 3940700 1890400 2050300 304470 146600 157870 1006600 584110 422510 0 0 0 36406 1948 38255 192606;192607;192608;192609;192610;192611;192612;192613 195723;195724;195725;195726;195727;195728;195729 195729 7 VLEDSDLKKSDIDEIVLVGGSTR LNMDLFRSTMKPVQKVLEDSDLKKSDIDEI KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K V L T R I 0 1 0 4 0 0 2 2 0 2 3 2 0 0 0 3 1 0 0 3 0 0 23 2 2487.3068 P11021 P11021 345 367 HSPA5 78 kDa glucose-regulated protein yes yes 3;4 1.5732E-18 84.762 By MS/MS 3 1.0939 1.1972 5.8567 3 Median 1.0939 1.1972 5.8567 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22898000 10735000 12163000 22898000 10735000 12163000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36407 1948 38256 192614;192615;192616 195730;195731;195732;195733 195730 4 VLEDTLSELAEGSERPGPK DRQVLAQRAFILTVKVLEDTLSELAEGSER TLSELAEGSERPGPKVCGLPGARMTTDVSH K V L P K V 1 1 0 1 0 0 4 2 0 0 3 1 0 0 2 2 1 0 0 1 0 0 19 1 2026.0219 A0A087WWW8;Q9Y6J0;B5MEB3 A0A087WWW8 1609 1627 CABIN1 Calcineurin-binding protein cabin-1 yes no 3 7.8471E-05 54.288 By MS/MS 1 1.6689 2.0013 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6689 2.0013 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5609000 1994200 3614800 0 0 0 0 0 0 5609000 1994200 3614800 0 0 0 0 0 0 0 0 0 36408 64 38257 192617 195734 195734 1 VLEEAAAAEEGLR LPPNNSYADFERFSKVLEEAAAAEEGLREL SKVLEEAAAAEEGLRELQRSRRLCHEDVEA K V L L R E 4 1 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 13 0 1356.6885 O43293 O43293 328 340 DAPK3 Death-associated protein kinase 3 yes yes 2 7.4802E-07 152.07 By MS/MS By MS/MS 1 1 1.2043 1.107 11.066 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0387 1.0237 NaN 1 0 Median 1.3964 1.1971 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16540000 7884400 8655600 0 0 0 0 0 0 12361000 6181300 6179700 4179100 1703100 2475900 0 0 0 0 0 0 36409 1564 38258 192618;192619 195735;195736;195737 195736 3 VLEEALLSR TGGAEGTGDAVLGEKVLEEALLSREHVLEL AVLGEKVLEEALLSREHVLELENSKGPSLA K V L S R E 1 1 0 0 0 0 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1028.5866 I3L0W0;Q92667 I3L0W0 28 36 AKAP1 A-kinase anchor protein 1, mitochondrial yes no 2 0.0032081 66.692 By MS/MS 2 1.1505 1.0946 8.1819 2 Median 1.1505 1.0946 8.1819 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20170000 9083200 11087000 20170000 9083200 11087000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36410 1275 38259 192620;192621 195738;195739;195740 195738 3 VLEEANQAINPK FFTPGNLKQARELIKVLEEANQAINPKLMQ LIKVLEEANQAINPKLMQLVDHRGGGGGGG K V L P K L 2 0 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1324.6987 A0A1X7SBZ2;A0A1W2PQ51;Q92841 A0A1X7SBZ2 536 547 DDX17 Probable ATP-dependent RNA helicase DDX17 yes no 2 1.0749E-30 214.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 6 5 6 5 0.86344 0.76828 43.776 28 Median 1.2615 1.2018 127.77 3 0 Median 0.90321 0.75354 4.0714 3 2 Plateau 0.6836 0.71831 16.593 6 0 Median 0.90886 0.78528 7.3842 5 0 Median 0.77526 0.79578 21.607 6 4 Median 0.96695 0.78774 8.7493 5 0 Median 860260000 454730000 405530000 31830000 11924000 19906000 33576000 17004000 16572000 521340000 286270000 235070000 64646000 31112000 33534000 147670000 77569000 70105000 61194000 30852000 30342000 36411 343 38260 192622;192623;192624;192625;192626;192627;192628;192629;192630;192631;192632;192633;192634;192635;192636;192637;192638;192639;192640;192641;192642;192643;192644;192645;192646;192647;192648;192649 195741;195742;195743;195744;195745;195746;195747;195748;195749;195750;195751;195752;195753;195754;195755;195756;195757;195758;195759;195760;195761;195762;195763;195764;195765;195766;195767;195768;195769;195770;195771;195772;195773;195774;195775;195776;195777;195778;195779;195780;195781;195782;195783;195784;195785 195746 45 VLEEDESIR ATTVSSPSAAITVQRVLEEDESIRTCLSED AITVQRVLEEDESIRTCLSEDAKEIQNKIE R V L I R T 0 1 0 1 0 0 3 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1088.535 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 640 648 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 2 0.0014358 81.548 By MS/MS By MS/MS 1 1 1.2432 1.1315 10.301 2 Median 1.2431 1.217 NaN 1 0 Median 1.2434 1.052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5998200 2859900 3138300 3291500 1712700 1578800 2706800 1147200 1559600 0 0 0 0 0 0 0 0 0 0 0 0 36412 300 38261 192650;192651 195786;195787;195788 195788 3 VLEEEEQR LELEELKKKREERRKVLEEEEQRRKQEEAD KREERRKVLEEEEQRRKQEEADRKLREEEE K V L Q R R 0 1 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 1030.4931 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 317 324 CALD1 Caldesmon yes no 2 0.0027464 127.84 By matching By MS/MS By MS/MS 1 1 1 1.0719 1.0953 19.149 3 Median NaN NaN NaN 0 0 Median 0.92477 0.85705 NaN 1 0 Median 1.0719 1.0953 NaN 1 0 Median 1.4519 1.2499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10152000 4923000 5228700 0 0 0 611250 379140 232110 8379500 4123300 4256300 1160900 420570 740330 0 0 0 0 0 0 36413 928 38262 192652;192653;192654 195789;195790;195791 195790 3 VLEEEEQRR LELEELKKKREERRKVLEEEEQRRKQEEAD REERRKVLEEEEQRRKQEEADRKLREEEEK K V L R R K 0 2 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1186.5942 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 317 325 CALD1 Caldesmon yes no 3 0.055552 23.429 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 625760 0 625760 0 0 0 0 0 0 625760 0 625760 0 0 0 0 0 0 0 0 0 36414 928 38263 192655 195792 195792 1 VLEEGSVEAR KSHLEVPLEENVNRRVLEEGSVEARTIEDA NVNRRVLEEGSVEARTIEDAIAVLSVAEEA R V L A R T 1 1 0 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1087.551 Q96CT7 Q96CT7 136 145 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 0.00033784 122.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 2 2 1.0846 0.96362 35.65 11 Median 1.0426 0.98908 NaN 1 0 Median 0.85664 0.72211 52.446 2 0 Median 1.0844 1.0489 43.333 4 0 Median 1.0074 0.83837 13.215 2 0 Median NaN NaN NaN 0 0 Median 1.1503 0.94393 2.9196 2 0 Median 70740000 33033000 37708000 4696500 2367500 2329000 5157500 2697100 2460400 32095000 14871000 17224000 24930000 11299000 13630000 0 0 0 3861600 1798000 2063600 36415 3621 38264 192656;192657;192658;192659;192660;192661;192662;192663;192664;192665;192666 195793;195794;195795;195796;195797;195798;195799;195800;195801;195802;195803;195804;195805;195806;195807;195808;195809 195796 17 VLEELEGVR LLSKLFPKIPPHSLRVLEELEGVRRRSFND PPHSLRVLEELEGVRRRSFNDFRSILPSNL R V L V R R 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1042.5659 P42356 P42356 219 227 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 2 0.0056451 70.919 By MS/MS 1 3.0493 3.3436 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.0493 3.3436 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7319400 1601300 5718100 0 0 0 0 0 0 7319400 1601300 5718100 0 0 0 0 0 0 0 0 0 36416 2311 38265 192667 195810 195810 1 VLEEMESR AAQGKVKLVVRYTPKVLEEMESRFEKMRSA VVRYTPKVLEEMESRFEKMRSAKRRQQT__ K V L S R F 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 8 0 991.46445 Q9NUP9;G3V1D4 Q9NUP9 177 184 LIN7C Protein lin-7 homolog C yes no 2 0.0034385 96.19 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.2223 1.1019 10.59 5 Median 0.97308 0.92213 NaN 1 0 Median 1.3884 1.1786 NaN 1 0 Median 1.1468 1.1019 NaN 1 0 Median 1.2223 1.0119 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4553 1.1794 NaN 1 0 Median 24115000 11757000 12358000 9404800 4924000 4480800 2046800 865450 1181400 9961400 4732100 5229400 2076200 998980 1077200 0 0 0 625520 236040 389480 36417 4117 38266 192668;192669;192670;192671;192672 195811;195812;195813;195814 195813 4 VLEENQEHYHIVQK LEKVFEELQATDKKRVLEENQEHYHIVQKF RVLEENQEHYHIVQKFLILGDIDGLMDEFS R V L Q K F 0 0 1 0 0 2 3 0 2 1 1 1 0 0 0 0 0 0 1 2 0 0 14 0 1764.8795 P57740 P57740 504 517 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3;4 7.1243E-07 97.813 By MS/MS By MS/MS By MS/MS 4 4 6 1.323 1.1677 13.256 14 Median NaN NaN NaN 0 0 Median 1.6428 1.3929 9.7995 4 2 Median 0.97223 1.0546 6.8119 4 0 Median 1.3457 1.1552 8.2179 6 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95178000 43301000 51877000 0 0 0 21481000 8048200 13433000 46503000 23639000 22864000 27195000 11614000 15581000 0 0 0 0 0 0 36418 2518 38267 192673;192674;192675;192676;192677;192678;192679;192680;192681;192682;192683;192684;192685;192686 195815;195816;195817;195818;195819;195820;195821;195822;195823;195824;195825;195826;195827;195828;195829 195826 15 VLEEQIGVHR EWLFHTQQLLQMQLKVLEEQIGVHRKSRKA QMQLKVLEEQIGVHRKSRKALCAKQRTAKK K V L H R K 0 1 0 0 0 1 2 1 1 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1178.6408 O14686 O14686 3527 3536 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 0.00035707 83.265 By MS/MS 1 0.83346 0.91623 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83346 0.91623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2909300 1607600 1301700 0 0 0 0 0 0 2909300 1607600 1301700 0 0 0 0 0 0 0 0 0 36419 1490 38268 192687 195830 195830 1 VLEEQIGVHRK EWLFHTQQLLQMQLKVLEEQIGVHRKSRKA MQLKVLEEQIGVHRKSRKALCAKQRTAKKA K V L R K S 0 1 0 0 0 1 2 1 1 1 1 1 0 0 0 0 0 0 0 2 0 0 11 1 1306.7357 O14686 O14686 3527 3537 KMT2D Histone-lysine N-methyltransferase 2D yes yes 3 0.022192 22.917 By MS/MS By matching 1 1 1.116 1.2182 5.5016 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0141 1.1718 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2281 1.2666 NaN 1 0 Median 2295400 1136800 1158600 0 0 0 0 0 0 1965900 1002700 963140 0 0 0 0 0 0 329550 134100 195450 36420 1490 38269 192688;192689 195831;195832 195832 2 VLEEVDWLITK AAPTVCLLVLSQAEKVLEEVDWLITKLKGQ QAEKVLEEVDWLITKLKGQVSQETLSEEAS K V L T K L 0 0 0 1 0 0 2 0 0 1 2 1 0 0 0 0 1 1 0 2 0 0 11 0 1343.7337 Q9NVI1;H3BP78;F8W7R3 Q9NVI1 1095 1105 FANCI Fanconi anemia group I protein yes no 2 0.00083547 86.624 By MS/MS 1 1.5018 1.2948 NaN 1 Median NaN NaN NaN 0 0 Median 1.5018 1.2948 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3746800 1545800 2201000 0 0 0 3746800 1545800 2201000 0 0 0 0 0 0 0 0 0 0 0 0 36421 4132 38270 192690 195833 195833 1 VLEGLREDMLETLVPK VLSPDTCVCRTDEGRVLEGLREDMLETLVP LEGLREDMLETLVPKAEGDRVMVVLGPQTG R V L P K A 0 1 0 1 0 0 3 1 0 0 4 1 1 0 1 0 1 0 0 2 0 0 16 1 1840.9968 Q92917 Q92917 401 416 GPKOW G patch domain and KOW motifs-containing protein yes yes 3 0.027629 17.701 By matching By MS/MS 1 1 0.85921 0.86975 7.2102 2 Median NaN NaN NaN 0 0 Median 0.90412 0.82651 NaN 1 0 Median 0.81653 0.91524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10672000 6079200 4593000 0 0 0 1369000 643060 725920 9303200 5436100 3867100 0 0 0 0 0 0 0 0 0 36422 3566 38271 192691;192692 195834;195835 195834 2 VLEGMEVVR VKTAWLDGKHVVFGKVLEGMEVVRKVESTK HVVFGKVLEGMEVVRKVESTKTDSRDKPLK K V L V R K 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 3 0 0 9 0 1030.5481 P23284 P23284 172 180 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.00056821 107.9 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 3 3 6 1.275 1.0878 69.04 23 Median 1.0248 0.98197 137.53 5 1 Median 1.3124 1.0873 7.9249 4 0 Median 1.0642 1.0209 2.7621 2 0 Median 1.4389 1.2024 2.658 3 1 Median 1.1473 1.1725 2.0764 3 0 Median 1.417 1.0977 4.4938 6 0 Median 1325400000 603870000 721570000 241460000 119630000 121830000 103480000 42394000 61087000 468580000 222900000 245680000 427970000 179900000 248070000 46354000 22248000 24106000 37599000 16798000 20801000 36423 2109 38272;38273 192693;192694;192695;192696;192697;192698;192699;192700;192701;192702;192703;192704;192705;192706;192707;192708;192709;192710;192711;192712;192713;192714;192715 195836;195837;195838;195839;195840;195841;195842;195843;195844;195845;195846;195847;195848;195849;195850;195851;195852;195853;195854;195855;195856;195857;195858;195859;195860;195861;195862;195863;195864;195865 195848 879 30 VLEGSELELAK RKHPSSPECLVSAQKVLEGSELELAKMTML SAQKVLEGSELELAKMTMLLLYHSTMSSKS K V L A K M 1 0 0 0 0 0 3 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1186.6445 A0A087WY61;F5H4J1;F5H6Y5;F5H763;F5H2F3;F5H0Z7;F5H3L6;F5GZW1;F5H1L0;Q14980 Q14980 87 97 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00015771 99.815 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 0.99095 0.88209 15.996 7 Median NaN NaN NaN 0 0 Median 1.1299 1.001 NaN 1 0 Median 0.8442 0.92353 NaN 1 0 Median 0.88898 0.8082 34.486 2 0 Median 0.84096 0.88209 NaN 1 1 Median 1.0241 0.86164 2.1061 2 0 Median 252850000 130290000 122550000 0 0 0 13440000 5892300 7547600 154640000 78706000 75934000 13001000 5861700 7139400 65298000 36663000 28635000 6468000 3170000 3298000 36424 2905;77 38274 192716;192717;192718;192719;192720;192721;192722 195866;195867;195868;195869;195870;195871;195872;195873 195866 8 VLEHQLLQTTK ______________________________ MFSKVLEHQLLQTTKLVEEHLDSEIQKLDQ K V L T K L 0 0 0 0 0 2 1 0 1 0 3 1 0 0 0 0 2 0 0 1 0 0 11 0 1308.7402 F8WBV5;G3XAJ4;F8WCJ3;B8ZZX4;O14530 F8WBV5 13 23 TXNDC9 Thioredoxin domain-containing protein 9 yes no 2;3 9.5067E-05 127.42 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.4416 1.3857 28.391 7 Median 1.4708 1.3701 7.1725 2 1 Median 1.064 0.8979 1.9984 2 1 Median 1.7298 1.6599 25.531 2 0 Median 1.7711 1.4642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33672000 13546000 20126000 18454000 7031100 11423000 8946200 4323100 4623200 4921700 1527900 3393800 1350400 663820 686580 0 0 0 0 0 0 36425 652 38275 192723;192724;192725;192726;192727;192728;192729 195874;195875;195876;195877;195878;195879;195880 195876 7 VLEKDAEVIVDWR GKTNDQDGLISGILRVLEKDAEVIVDWRPL LRVLEKDAEVIVDWRPLDDALDSSSILYAR R V L W R P 1 1 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 1 0 3 0 0 13 1 1570.8355 Q8TC07;F8WDJ1;F8WF35;F8WCB5 Q8TC07 40 52 TBC1D15 TBC1 domain family member 15 yes no 3 0.052852 15.387 By matching By matching By MS/MS 1 1 4 1.2358 1.1269 14.309 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2931 1.1857 NaN 1 0 Median 0.89008 0.91341 NaN 1 0 Median 1.2798 1.1562 12.848 4 0 Median 23997000 10792000 13205000 0 0 0 0 0 0 0 0 0 639590 236520 403070 7855800 4225300 3630500 15502000 6329800 9171800 36426 3463 38276 192730;192731;192732;192733;192734;192735 195881 195881 1 VLELDNVK MVRRAAASKLGEFAKVLELDNVKSEIIPMF KLGEFAKVLELDNVKSEIIPMFSNLASDEQ K V L V K S 0 0 1 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 P30153;B3KQV6;C9J9C1 P30153 195 202 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.0029868 102.72 By MS/MS By MS/MS By MS/MS By matching 1 3 2 1 1.1824 1.0887 23.122 7 Median 1.1689 1.0842 NaN 1 0 Median 1.1824 0.98433 12.433 3 0 Median 1.1592 1.1626 9.2922 2 0 Median NaN NaN NaN 0 0 Median 2.0084 1.915 NaN 1 0 Median NaN NaN NaN 0 0 Median 109800000 49900000 59895000 47369000 21609000 25760000 46606000 21540000 25066000 12015000 5293100 6722000 0 0 0 3805800 1457900 2347900 0 0 0 36427 2190 38277 192736;192737;192738;192739;192740;192741;192742 195882;195883;195884;195885;195886;195887;195888 195882 7 VLELDPALAPVVSR AAVWNAQEAQADFAKVLELDPALAPVVSRE KVLELDPALAPVVSRELQALEARIRQKDEE K V L S R E 2 1 0 1 0 0 1 0 0 0 3 0 0 0 2 1 0 0 0 3 0 0 14 0 1477.8504 O00170 O00170 291 304 AIP AH receptor-interacting protein yes yes 2 2.2346E-08 116.77 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 1 2 1 2 2 0.98529 0.79872 46.297 9 Median 0.71609 0.69284 4.9416 2 0 Median NaN NaN NaN 0 0 Median 1.0522 1.0037 23.061 2 0 Median 0.98529 0.79731 NaN 1 0 Median 2.1257 2.1085 2.4025 2 0 Median 0.89458 0.72473 13.749 2 0 Median 89474000 41696000 47778000 38747000 21101000 17646000 0 0 0 12849000 6775500 6073000 57916 29594 28322 28188000 8260800 19927000 9633800 5529400 4104400 36428 1445 38278 192743;192744;192745;192746;192747;192748;192749;192750;192751;192752 195889;195890;195891;195892;195893;195894;195895;195896;195897;195898 195892 10 VLELEDELQESR VIALTSQELEESREKVLELEDELQESRGFR REKVLELEDELQESRGFRKKIKRLEESNKK K V L S R G 0 1 0 1 0 1 4 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 12 0 1458.7202 Q08378 Q08378 1083 1094 GOLGA3 Golgin subfamily A member 3 yes yes 2 4.017E-05 105.86 By MS/MS 1 4.5829 4.311 NaN 1 Median 4.5829 4.311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8867800 1625500 7242300 8867800 1625500 7242300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36429 2738 38279 192753 195899 195899 1 VLELEGEKGEWGFK LKEDDPKAALSSFQKVLELEGEKGEWGFKA KVLELEGEKGEWGFKALKQMIKINFKLTNF K V L F K A 0 0 0 0 0 0 4 3 0 0 2 2 0 1 0 0 0 1 0 1 0 0 14 1 1619.8195 P61201;H0YKU5 P61201 57 70 COPS2 COP9 signalosome complex subunit 2 yes no 3 0.00094974 40.025 By matching By MS/MS By matching 1 1 1 1.221 1.2789 110.19 3 Median 0.19289 0.19121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.221 1.2789 NaN 1 0 Median 1.3685 1.2998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9302400 4952400 4350000 1398900 1209500 189410 0 0 0 7331500 3533800 3797700 571920 209030 362890 0 0 0 0 0 0 36430 2548 38280 192754;192755;192756 195900;195901 195900 2 VLELKEHK GFGFVLFKDAASVDKVLELKEHKLDGKLID DAASVDKVLELKEHKLDGKLIDPKRAKALK K V L H K L 0 0 0 0 0 0 2 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 8 1 994.58113 A0A087WUK2;O14979 A0A087WUK2 205 212 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 2 0.016106 98.299 By MS/MS 1 0.94713 0.99713 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94713 0.99713 NaN 1 0 Median NaN NaN NaN 0 0 Median 3044400 1560000 1484400 0 0 0 0 0 0 0 0 0 0 0 0 3044400 1560000 1484400 0 0 0 36431 32 38281 192757 195902;195903 195902 2 VLELKEHKLDGK GFGFVLFKDAASVDKVLELKEHKLDGKLID VDKVLELKEHKLDGKLIDPKRAKALKGKEP K V L G K L 0 0 0 1 0 0 2 1 1 0 3 3 0 0 0 0 0 0 0 1 0 0 12 2 1407.8086 A0A087WUK2;O14979 A0A087WUK2 205 216 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes no 3 2.2268E-05 93.839 By MS/MS 2 1.0147 1.1077 9.939 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0147 1.1077 9.939 2 0 Median NaN NaN NaN 0 0 Median 17003000 8164400 8838100 0 0 0 0 0 0 0 0 0 0 0 0 17003000 8164400 8838100 0 0 0 36432 32 38282 192758;192759 195904;195905;195906 195906 3 VLELNASDER AAARELFGPELFRLRVLELNASDERGIQVV LFRLRVLELNASDERGIQVVREKVKNFAQL R V L E R G 1 1 1 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1144.5724 P35249;C9JZI1;C9J8M3;C9JTT7;C9JXZ7 P35249 105 114 RFC4 Replication factor C subunit 4 yes no 2 1.2123E-05 151.44 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 1 1.1616 1.0173 28.798 7 Median 0.66863 0.64815 35.782 2 0 Median 1.1616 0.97277 NaN 1 0 Median 1.0493 1.0204 NaN 1 0 Median 1.3322 1.1212 13.746 2 0 Median NaN NaN NaN 0 0 Median 1.2824 1.0328 NaN 1 0 Median 53286000 24597000 28689000 10253000 5541000 4711800 3024000 1294600 1729300 20071000 8910500 11160000 9306300 4043900 5262400 0 0 0 10632000 4807400 5825000 36433 2237 38283 192760;192761;192762;192763;192764;192765;192766 195907;195908;195909;195910;195911;195912;195913;195914;195915;195916;195917 195910 10 VLELQGLGWEGQEAEK PTEILSSCLTMPKLRVLELQGLGWEGQEAE LELQGLGWEGQEAEKILCKGLPHCMVIVRA R V L E K I 1 0 0 0 0 2 4 3 0 0 3 1 0 0 0 0 0 1 0 1 0 0 16 0 1784.8945 Q9NXK8 Q9NXK8 286 301 FBXL12 F-box/LRR-repeat protein 12 yes yes 2 0.00072332 43.084 By MS/MS 1 1.0074 0.96956 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0074 0.96956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1934400 859240 1075100 0 0 0 0 0 0 1934400 859240 1075100 0 0 0 0 0 0 0 0 0 36434 4167 38284 192767 195918;195919 195919 2 VLELVSITANK VDLRPKGLDGARAERVLELVSITANKNTCP RAERVLELVSITANKNTCPGDRSAITPGGL R V L N K N 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 11 0 1185.6969 P34897;H0YIZ0 P34897 399 409 SHMT2 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase yes no 2 0.00015337 82.749 By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 1.3243 1.1759 26.236 8 Median 0.97678 0.90992 21.914 2 0 Median NaN NaN NaN 0 0 Median 0.97584 0.94286 8.1733 2 0 Median 1.5563 1.3316 3.6476 3 0 Median 1.8012 1.7234 NaN 1 0 Median NaN NaN NaN 0 0 Median 116650000 53904000 62744000 40814000 18735000 22080000 0 0 0 49565000 24951000 24614000 23904000 9533300 14371000 2364700 684790 1679900 0 0 0 36435 2228 38285 192768;192769;192770;192771;192772;192773;192774;192775;192776 195920;195921;195922;195923;195924;195925;195926;195927;195928 195921 9 VLELYVSDR ______________________________ ______________________________ M V L D R E 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 2 0 0 9 0 1092.5815 K7ENF0 K7ENF0 2 10 NARS yes yes 2 0.00088636 92.439 By matching By MS/MS By MS/MS 2 1 1 0.97336 0.82808 64.874 4 Median NaN NaN NaN 0 0 Median 0.52908 0.4601 68.42 2 0 Median 1.2544 1.2847 NaN 1 0 Median 1.099 0.91871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13394000 6641300 6752600 0 0 0 4748000 2997600 1750400 6008900 2478200 3530600 2637100 1165500 1471600 0 0 0 0 0 0 36436 1386 38286 192777;192778;192779;192780 195929;195930 195930 2 VLELYVSDREGSDATGDGTK ______________________________ VSDREGSDATGDGTKEKPFKTGLKYCTMFK M V L T K E 1 1 0 3 0 0 2 3 0 0 2 1 0 0 0 2 2 0 1 2 0 0 20 1 2111.0019 K7ENF0 K7ENF0 2 21 NARS yes yes 3 0.0034609 25.544 By MS/MS 1 0.98235 0.98628 NaN 1 Median 0.98235 0.98628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6875100 2737300 4137800 6875100 2737300 4137800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36437 1386 38287 192781 195931 195931 1 VLENAEGAR TTNSCVAVMEGKQAKVLENAEGARTTPSVV EGKQAKVLENAEGARTTPSVVAFTADGERL K V L A R T 2 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 957.48796 P38646;A0A3B3ITI4;D6RJI2;D6RA73 P38646 77 85 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.00062125 109.01 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 1 2 1.2169 1.1675 13.578 9 Median 1.2027 1.1658 1.2433 2 0 Median 1.5682 1.3716 15.17 2 0 Median 1.0594 1.1412 3.2291 2 0 Median 1.355 1.1567 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3362 1.0755 24.063 2 0 Median 67417000 28198000 39219000 14053000 6512100 7540800 46474000 18475000 27999000 6248400 2932700 3315700 305240 124280 180960 0 0 0 336300 153890 182410 36438 2277 38288 192782;192783;192784;192785;192786;192787;192788;192789;192790 195932;195933;195934;195935;195936;195937;195938;195939;195940 195939 9 VLENIELNK LRLHSLLGDYYQAIKVLENIELNKKSMYSR YYQAIKVLENIELNKKSMYSRVPECQVTTY K V L N K K 0 0 2 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1070.5972 B0QY89;Q9Y262;B0QY90 B0QY89 336 344 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.0014358 81.548 By matching By MS/MS By matching By matching 1 1 2 1 0.98459 0.84297 26.524 5 Median 0.8933 0.83814 NaN 1 0 Median 1.1148 0.93139 NaN 1 0 Median 1.0996 1.098 45.739 2 0 Median 0.98459 0.84297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35454000 18140000 17314000 12272000 7558000 4714400 18335000 8287700 10048000 4323100 2124500 2198600 523320 169950 353370 0 0 0 0 0 0 36439 554 38289 192791;192792;192793;192794;192795 195941 195941 1 VLENIELNKK LRLHSLLGDYYQAIKVLENIELNKKSMYSR YQAIKVLENIELNKKSMYSRVPECQVTTYY K V L K K S 0 0 2 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1198.6921 B0QY89;Q9Y262;B0QY90 B0QY89 336 345 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2;3 5.0995E-05 141.2 By MS/MS By MS/MS By MS/MS 3 3 1 1.1165 1.0456 43.73 7 Median 1.0682 0.99952 61.2 3 0 Median 1.2495 1.1671 16.572 3 1 Plateau 1.1636 1.2221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60057000 29771000 30286000 34766000 18101000 16666000 23100000 10549000 12550000 2191200 1121000 1070200 0 0 0 0 0 0 0 0 0 36440 554 38290 192796;192797;192798;192799;192800;192801;192802 195942;195943;195944;195945;195946;195947;195948;195949;195950;195951 195950 10 VLEPFLLR DHGKGRENGYQSLHKVLEPFLLRRVKKDVE GYQSLHKVLEPFLLRRVKKDVEKSLPAKVE K V L L R R 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 8 0 985.59605 O14647;A0A1B0GTU9 O14647 692 699 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes no 2 0.0034866 93.262 By matching By matching By MS/MS By matching 1 1 2 2 1.0797 0.99533 14.085 6 Median NaN NaN NaN 0 0 Median 0.99767 0.85033 NaN 1 0 Median 1.0152 1.1333 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98505 1.0388 22.63 2 0 Median 1.1854 0.99533 5.703 2 0 Median 17167000 8957700 8209300 0 0 0 10742000 5586300 5156000 590120 264010 326110 0 0 0 5194800 2830900 2363900 639800 276480 363320 36441 321 38291 192803;192804;192805;192806;192807;192808 195952;195953 195952 2 VLEQAEGKVEEPENPAAK QTPPVISSAHIQDERVLEQAEGKVEEPENP QAEGKVEEPENPAAKEKCEGKEEEEETDGS R V L A K E 3 0 1 0 0 1 5 1 0 0 1 2 0 0 2 0 0 0 0 2 0 0 18 1 1936.9742 Q9P2D1 Q9P2D1 2167 2184 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 3 0.00079525 32.995 By MS/MS By MS/MS 2 2 0.64746 0.69515 32.976 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47391 0.54111 11.334 2 0 Median 0.94908 0.92459 16.243 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12385000 7630500 4754400 0 0 0 0 0 0 9883900 6396500 3487400 2501000 1234000 1267100 0 0 0 0 0 0 36442 4220 38292 192809;192810;192811;192812 195954;195955;195956;195957;195958 195956 5 VLEQHKLNKDQWEER HKSGYLAGDKLLPQRVLEQHKLNKDQWEER VLEQHKLNKDQWEERIQVWHEEHRGMLRED R V L E R I 0 1 1 1 0 2 3 0 1 0 2 2 0 0 0 0 0 1 0 1 0 0 15 2 1950.9912 P26038 P26038 157 171 MSN Moesin yes yes 4 0.061451 11.279 By MS/MS 1 1.2037 1.3258 NaN 1 Median 1.2037 1.3258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2382600 994490 1388200 2382600 994490 1388200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36443 2139 38293 192813 195959;195960 195960 2 VLEQLEDLDSR SCARLAEMRQKEIPRVLEQLEDLDSRVLYY EIPRVLEQLEDLDSRVLYYSATKNGILYRV R V L S R V 0 1 0 2 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1315.662 P26358 P26358 910 920 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 2.0665E-10 179.8 By matching By MS/MS By MS/MS By matching 1 2 3 1 1.0192 0.899 17.356 7 Median 1.2595 1.2351 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9914 1.0854 2.0809 2 0 Median 1.0443 0.88803 9.7588 3 0 Plateau NaN NaN NaN 0 0 Median 1.0192 0.83775 NaN 1 0 Median 77651000 38967000 38684000 3209600 1426900 1782700 0 0 0 67424000 34052000 33372000 6346700 3146400 3200300 0 0 0 670270 341150 329120 36444 2142 38294 192814;192815;192816;192817;192818;192819;192820 195961;195962;195963;195964;195965;195966;195967;195968 195962 8 VLEQLIVAHFPMQSR FFTSLTGGSLEELRRVLEQLIVAHFPMQSR VLEQLIVAHFPMQSREFPPGTPRFNNYVDC R V L S R E 1 1 0 0 0 2 1 0 1 1 2 0 1 1 1 1 0 0 0 2 0 0 15 0 1766.9502 P78527 P78527 1713 1727 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.7571E-07 95.018 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 1 0.80034 0.83442 11.419 9 Median 0.86763 0.86362 4.6276 3 2 Median 0.93125 0.76818 23.726 2 1 Median 0.79289 0.83442 6.1229 3 0 Median NaN NaN NaN 0 0 Median 0.67569 0.70747 NaN 1 0 Median NaN NaN NaN 0 0 Median 59894000 32367000 27527000 18235000 9834500 8400700 14627000 6974500 7653000 25025000 14363000 10662000 0 0 0 2006400 1194700 811750 0 0 0 36445 2647 38295;38296 192821;192822;192823;192824;192825;192826;192827;192828;192829 195969;195970;195971;195972;195973;195974;195975;195976;195977;195978;195979;195980;195981;195982;195983;195984 195982 1338 16 VLEQLQR SKVLARHFSAADASRVLEQLQRDYERSLSR FSAADASRVLEQLQRDYERSLSRLTLDDIE R V L Q R D 0 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 884.50797 P11441;Q5HY81 P11441 115 121 UBL4A Ubiquitin-like protein 4A yes no 2 0.007586 88.734 By MS/MS 1 1.1268 1.1246 NaN 1 Median 1.1268 1.1246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3573700 1565100 2008600 3573700 1565100 2008600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36446 1965 38297 192830 195985;195986 195986 2 VLEQLTGQTPVFSK ICVGESGDRLTRAAKVLEQLTGQTPVFSKA KVLEQLTGQTPVFSKARYTVRSFGIRRNEK K V L S K A 0 0 0 0 0 2 1 1 0 0 2 1 0 1 1 1 2 0 0 2 0 0 14 0 1545.8403 P62913;Q5VVC8 P62913 39 52 RPL11 60S ribosomal protein L11 yes no 2;3 5.2384E-08 167.6 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 4 3 4 6 2 1.0328 0.95008 11.611 24 Median 0.97575 0.89777 4.8351 6 2 Median 1.0389 0.8749 10.832 4 0 Median 1.0526 0.98832 8.209 3 0 Median 1.368 1.0679 9.1629 4 0 Median 0.98396 1.0335 12.404 5 0 Median 1.1871 0.9778 9.8539 2 0 Median 1543500000 759190000 784260000 977050000 484820000 492230000 64314000 30873000 33441000 187830000 91391000 96435000 31790000 14407000 17382000 257180000 126100000 131080000 25291000 11606000 13684000 36447 2609 38298 192831;192832;192833;192834;192835;192836;192837;192838;192839;192840;192841;192842;192843;192844;192845;192846;192847;192848;192849;192850;192851;192852;192853;192854;192855 195987;195988;195989;195990;195991;195992;195993;195994;195995;195996;195997;195998;195999;196000;196001;196002;196003;196004;196005;196006;196007;196008;196009;196010;196011;196012;196013;196014;196015;196016;196017;196018;196019;196020;196021;196022;196023;196024;196025;196026;196027;196028;196029;196030;196031;196032;196033;196034 196027 48 VLEQPVVVQSVGTDGR SALAQARLLYGNDAKVLEQPVVVQSVGTDG LEQPVVVQSVGTDGRVFHFLVFQLNTTDLD K V L G R V 0 1 0 1 0 2 1 2 0 0 1 0 0 0 1 1 1 0 0 5 0 0 16 0 1681.8999 Q9BZE1;S4R369;A6NHR2;H0Y4J2 Q9BZE1 335 350 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 1.4113E-08 151.78 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.201 1.1595 17.19 4 Median 1.0183 1.0171 NaN 1 0 Median 1.3925 1.1872 NaN 1 0 Median 1.0359 1.1325 NaN 1 0 Median 1.7375 1.5262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42002000 19720000 22282000 17960000 8814100 9146200 1538200 638810 899370 20660000 9599400 11061000 1843800 667690 1176100 0 0 0 0 0 0 36448 3897 38299 192856;192857;192858;192859 196035;196036;196037;196038;196039;196040;196041 196038 7 VLESEEQVLVMYHR TKIFLENHVRHLHKRVLESEEQVLVMYHRY RVLESEEQVLVMYHRYWEEYSKGADYMDCL R V L H R Y 0 1 0 0 0 1 3 0 1 0 2 0 1 0 0 1 0 0 1 3 0 0 14 0 1730.8662 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 89 102 CUL2 Cullin-2 yes no 3 0.00064293 43.382 By MS/MS By matching 1 1 1.2195 1.1094 12.493 2 Median 1.0634 1.0156 NaN 1 0 Median 1.3986 1.2119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9593300 4232700 5360500 5518300 2563000 2955300 4075000 1669800 2405200 0 0 0 0 0 0 0 0 0 0 0 0 36449 196 38300 192860;192861 196042;196043 196043 2 VLESLDR HLEKQVRLLNIRLNRVLESLDRSKDK____ LLNIRLNRVLESLDRSKDK___________ R V L D R S 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 830.44978 Q8WY22 Q8WY22 241 247 BRI3BP BRI3-binding protein yes no 2 0.01522 72.138 By MS/MS By MS/MS By MS/MS 1 1 1 1.3383 1.2338 7.3103 3 Median NaN NaN NaN 0 0 Median 1.3383 1.1105 NaN 1 0 Median 1.2911 1.2338 NaN 1 0 Median 1.5463 1.278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8304500 3486700 4817900 0 0 0 3158900 1211600 1947300 3947900 1947700 2000100 1197800 327340 870430 0 0 0 0 0 0 36450 3523 38301 192862;192863;192864 196044;196045;196046;196047;196048 196045 5 VLESSIR KGQQELLYVVPFVAKVLESSIRSVVFRPPN YVVPFVAKVLESSIRSVVFRPPNPWTMAIM K V L I R S 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 7 0 802.45487 A5YKK6;H3BVC9 A5YKK6 1242 1248 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.026776 52.683 By MS/MS By MS/MS 1 1 1.2944 1.084 28.144 2 Median NaN NaN NaN 0 0 Median 1.5806 1.3227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.06 0.88843 NaN 1 0 Median 1885200 711450 1173800 0 0 0 1147800 373170 774610 0 0 0 0 0 0 0 0 0 737460 338280 399180 36451 503 38302 192865;192866 196049;196050 196049 2 VLESVTVHNPENQSYLIAYK EKLVASLWGAERCLRVLESVTVHNPENQSY TVHNPENQSYLIAYKDSQLIVSSAKALQHC R V L Y K D 1 0 2 0 0 1 2 0 1 1 2 1 0 0 1 2 1 0 2 3 0 0 20 0 2303.1798 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 857 876 WAPAL Wings apart-like protein homolog yes no 3 2.3204E-07 53.278 By matching By MS/MS By matching 1 2 2 0.72603 0.7734 50.358 5 Median NaN NaN NaN 0 0 Median 0.70207 0.64216 NaN 1 0 Median 0.67892 0.73621 6.9687 2 0 Median 1.4062 1.3344 71.067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34937000 18484000 16452000 0 0 0 286170 153410 132750 30019000 15866000 14153000 4631200 2464900 2166300 0 0 0 0 0 0 36452 3249 38303 192867;192868;192869;192870;192871 196051;196052;196053;196054 196051 4 VLESVVADLLNR ______________________________ ______________________________ M V L N R F 1 1 1 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 3 0 0 12 0 1326.7507 Q709C8 Q709C8 2 13 VPS13C Vacuolar protein sorting-associated protein 13C yes yes 2 0.00034587 132.91 By MS/MS 1 1.2274 1.0203 NaN 1 Median NaN NaN NaN 0 0 Median 1.2274 1.0203 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6689000 3156100 3532900 0 0 0 6689000 3156100 3532900 0 0 0 0 0 0 0 0 0 0 0 0 36453 3205 38304 192872 196055 196055 1 VLETAEDIQER ______________________________ SGVKVLETAEDIQERRQQVLDRYHRFKELS K V L E R R 1 1 0 1 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1301.6463 A0A0D9SF54;A0A0D9SFF6;A0A1B0GTB7;Q13813 Q13813 8 18 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 8.0252E-11 180.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 4 3 1 1 1.0656 0.98606 27.082 16 Median 1.0909 1.0689 30.4 4 1 Median 1.2413 0.98861 30.791 3 1 Median 1.0025 1.0911 40.611 4 2 Median 1.0483 0.91471 10.154 3 0 Median 0.96598 0.98351 NaN 1 0 Median 0.95865 0.79249 NaN 1 0 Median 568660000 268940000 299720000 51345000 21968000 29377000 172610000 74110000 98502000 222510000 114270000 108230000 85303000 40391000 44912000 26987000 13857000 13130000 9907800 4337100 5570700 36454 264;2838 38305 192873;192874;192875;192876;192877;192878;192879;192880;192881;192882;192883;192884;192885;192886;192887;192888 196056;196057;196058;196059;196060;196061;196062;196063;196064;196065;196066;196067;196068;196069;196070;196071;196072;196073;196074;196075;196076;196077;196078;196079;196080;196081;196082;196083 196068 28 VLETAEDIQERR ______________________________ GVKVLETAEDIQERRQQVLDRYHRFKELST K V L R R Q 1 2 0 1 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 12 1 1457.7474 A0A0D9SF54;A0A0D9SFF6;A0A1B0GTB7;Q13813 Q13813 8 19 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 1.0799E-18 136.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 3 2 1 1.2547 1.2201 24.964 11 Median 1.3504 1.4441 29.579 4 0 Median 1.4221 1.3328 12.5 2 1 Median 0.8653 1.0725 13.078 2 0 Median NaN NaN NaN 0 0 Median 1.2102 1.3091 24.452 2 0 Median 0.98414 0.86378 NaN 1 0 Median 51596000 21132000 30465000 13132000 4991400 8140900 15727000 5650900 10076000 11446000 5415100 6031300 0 0 0 8962500 3994800 4967700 2328200 1079400 1248800 36455 264;2838 38306 192889;192890;192891;192892;192893;192894;192895;192896;192897;192898;192899;192900 196084;196085;196086;196087;196088;196089;196090;196091;196092;196093;196094;196095;196096 196089 13 VLETFLAK KATSSHPNSTSLKAKVLETFLAKSRPELLE STSLKAKVLETFLAKSRPELLEYYIKVILD K V L A K S 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 8 0 919.53787 Q14258;A0A3B3IUA7 Q14258 440 447 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes no 2 0.0067369 69.998 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.2871 1.2195 20.044 8 Median 1.0439 1.0468 15.192 3 0 Median 1.6967 1.4628 2.438 2 0 Median 1.2569 1.282 NaN 1 0 Median 1.4521 1.258 11.456 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49471000 24000000 25471000 22410000 11938000 10472000 14795000 5979900 8815600 9756700 5102800 4653900 2508600 979610 1528900 0 0 0 0 0 0 36456 2870 38307 192901;192902;192903;192904;192905;192906;192907;192908 196097;196098;196099;196100;196101;196102;196103 196098 7 VLETLASSLHTLK MLQGATELVAEPNRRVLETLASSLHTLKFR RRVLETLASSLHTLKFRHLLFSDVAAQQSL R V L L K F 1 0 0 0 0 0 1 0 1 0 4 1 0 0 0 2 2 0 0 1 0 0 13 0 1410.8082 A0A0B4J2G4;Q15345;A0A087X0S7;A0A087WTU1 A0A0B4J2G4 165 177 LRRC41 Leucine-rich repeat-containing protein 41 yes no 2;3 2.7171E-05 93.058 By matching By MS/MS By matching By matching 1 3 1 1 1.1035 1.0154 13.131 6 Median NaN NaN NaN 0 0 Median 1.0182 0.91923 NaN 1 0 Median 1.1354 1.2041 8.9638 3 0 Median 1.0726 0.93222 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1697 0.97787 NaN 1 0 Median 21161000 9595400 11566000 0 0 0 668560 329380 339180 19476000 8784900 10691000 648370 275970 372390 0 0 0 368210 205160 163050 36457 226 38308 192909;192910;192911;192912;192913;192914 196104;196105;196106;196107;196108 196104 5 VLETLQEK DHENKKVRLVLSGEKVLETLQEKGERTNPN LVLSGEKVLETLQEKGERTNPNHPTLWRPE K V L E K G 0 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 958.53351 B4E2I4;E1CEI4;A0A2R8YEL6;P48506;A0A0C4DGB2 B4E2I4 21 28 GCLC Glutamate--cysteine ligase catalytic subunit yes no 2 0.0034039 98.299 By MS/MS 1 1.1185 0.95018 NaN 1 Median NaN NaN NaN 0 0 Median 1.1185 0.95018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4805600 2231000 2574600 0 0 0 4805600 2231000 2574600 0 0 0 0 0 0 0 0 0 0 0 0 36458 399 38309 192915 196109;196110 196110 2 VLETLQEKGER DHENKKVRLVLSGEKVLETLQEKGERTNPN SGEKVLETLQEKGERTNPNHPTLWRPEYGS K V L E R T 0 1 0 0 0 1 3 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 1 1300.6987 B4E2I4;E1CEI4;A0A2R8YEL6;P48506;A0A0C4DGB2 B4E2I4 21 31 GCLC Glutamate--cysteine ligase catalytic subunit yes no 3 0.00057602 57.019 By MS/MS By matching 1 2 1.0803 1.096 35.831 3 Median 1.0803 1.096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91653 0.89061 47.756 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2242400 1192200 1050200 1844800 975250 869500 0 0 0 0 0 0 397680 216970 180710 0 0 0 0 0 0 36459 399 38310 192916;192917;192918 196111 196111 1 VLETTVEIFNK LAMKCYPDRVDYVDKVLETTVEIFNKLNLE YVDKVLETTVEIFNKLNLEHIATSSAVSKE K V L N K L 0 0 1 0 0 0 2 0 0 1 1 1 0 1 0 0 2 0 0 2 0 0 11 0 1291.7024 Q96QK1 Q96QK1 372 382 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.033973 49.418 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36460 3722 38311 192919 196112 196112 1 VLEVASGSGQHAAHFAR HVLRQYLDPAQRGVRVLEVASGSGQHAAHF EVASGSGQHAAHFARAFPLAEWQPSDVDQR R V L A R A 4 1 0 0 0 1 1 2 2 0 1 0 0 1 0 2 0 0 0 2 0 0 17 0 1735.8754 H3BS73;H3BRT2;H3BNB2;A0A087WYU2;Q96S19;H3BQ55;H3BNT3;H3BMF3 H3BS73 31 47 C16orf13 UPF0585 protein C16orf13 yes no 4 0.0039642 39.685 By MS/MS 1 1.5136 1.2866 NaN 1 Median NaN NaN NaN 0 0 Median 1.5136 1.2866 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1499400 551690 947700 0 0 0 1499400 551690 947700 0 0 0 0 0 0 0 0 0 0 0 0 36461 88 38312 192920 196113 196113 1 VLEVGALQAVYELER TCPRAVIHLLLCQLRVLEVGALQAVYELER VLEVGALQAVYELERILNRFLEENPDPSAS R V L E R I 2 1 0 0 0 1 3 1 0 0 3 0 0 0 0 0 0 0 1 3 0 0 15 0 1687.9145 O95602;B9ZVN9 O95602 126 140 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.024587 62.408 By MS/MS By matching 1 1 2.0608 2.0025 87.291 2 Median NaN NaN NaN 0 0 Median 4.3647 3.7122 NaN 1 0 Median 0.97297 1.0802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5590000 1649000 3941000 0 0 0 3485800 644240 2841600 2104200 1004800 1099400 0 0 0 0 0 0 0 0 0 36462 1781 38313 192921;192922 196114 196114 0 VLEVNPQNK LLMNEFESAKGDFEKVLEVNPQNKAARLQI KGDFEKVLEVNPQNKAARLQISMCQKKAKE K V L N K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 9 0 1039.5662 Q13451 Q13451 377 385 FKBP5 Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed yes yes 2 0.0062885 69.998 By MS/MS 1 0.99869 0.8579 NaN 1 Median NaN NaN NaN 0 0 Median 0.99869 0.8579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2092400 1063300 1029100 0 0 0 2092400 1063300 1029100 0 0 0 0 0 0 0 0 0 0 0 0 36463 2819 38314 192923 196115 196115 1 VLEVPPVVYSR ATLWYVPLSLKNVDKVLEVPPVVYSRQEQE NVDKVLEVPPVVYSRQEQEEEGRKRYEAQK K V L S R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 4 0 0 11 0 1256.7129 O00154;K7EKP8 O00154 173 183 ACOT7 Cytosolic acyl coenzyme A thioester hydrolase yes no 2 0.00011703 134.59 By MS/MS By MS/MS By MS/MS 3 3 1 0.86179 0.82985 8.652 7 Median 0.80277 0.77512 6.8434 3 0 Median 0.97437 0.84767 6.5652 3 0 Median 0.86179 0.93652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152180000 80989000 71188000 118620000 63842000 54781000 25770000 13077000 12693000 7784000 4070400 3713700 0 0 0 0 0 0 0 0 0 36464 1443 38315 192924;192925;192926;192927;192928;192929;192930 196116;196117;196118;196119;196120;196121;196122;196123;196124;196125;196126;196127;196128 196117 13 VLFASQEIPASPFR TVKYVPPAAGRYTIKVLFASQEIPASPFRV KVLFASQEIPASPFRVKVDPSHDASKVKAE K V L F R V 2 1 0 0 0 1 1 0 0 1 1 0 0 2 2 2 0 0 0 1 0 0 14 0 1560.83 O75369;E7EN95 O75369 823 836 FLNB Filamin-B yes no 2 3.6996E-32 207.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 2 0.84768 0.74039 35.609 11 Median 0.87195 0.84476 7.4949 3 0 Median 0.85287 0.70576 6.7751 2 0 Median 0.66793 0.72795 56.285 3 0 Plateau 1.009 0.87779 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94201 0.7905 11.586 2 0 Median 111470000 60930000 50536000 72729000 39351000 33378000 21516000 11400000 10117000 16073000 9609600 6463500 817130 412360 404770 0 0 0 330760 156900 173860 36465 1664 38316 192931;192932;192933;192934;192935;192936;192937;192938;192939;192940;192941 196129;196130;196131;196132;196133;196134;196135;196136;196137;196138;196139;196140;196141;196142;196143;196144;196145;196146 196132 18 VLFDKDVNER LLVKLQELNYNLKVKVLFDKDVNERNTVKG NLKVKVLFDKDVNERNTVKGFRKFNILGTH K V L E R N 0 1 1 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 10 1 1233.6354 P42224;J3KPM9 P42224 362 371 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 3 0.0023552 47.894 By MS/MS By matching By matching 1 1 1 0.90128 0.9667 61.553 3 Median 0.37599 0.38587 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90128 0.9667 NaN 1 0 Median 1.4271 1.2422 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14215000 8352100 5862900 7259400 4894200 2365200 0 0 0 5445500 2780800 2664700 1510100 677110 833030 0 0 0 0 0 0 36466 2308 38317 192942;192943;192944 196147;196148 196147 2 VLFDKVASQGEVVR TRNSEPAGLETPEAKVLFDKVASQGEVVRK KVLFDKVASQGEVVRKLKTEKAPKDQVDIA K V L V R K 1 1 0 1 0 1 1 1 0 0 1 1 0 1 0 1 0 0 0 4 0 0 14 1 1545.8515 P07814;V9GYZ6 P07814 903 916 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 3 8.9793E-05 74.475 By MS/MS 2 0.94587 1.0077 18.817 2 Median 0.94587 1.0077 18.817 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42098000 22460000 19638000 42098000 22460000 19638000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36467 1892 38318 192945;192946 196149 196149 1 VLFDPFELDTSVTPGR ATTTEGLLIYSLDTRVLFDPFELDTSVTPG LFDPFELDTSVTPGRVREALRQQDFTRAIL R V L G R V 0 1 0 2 0 0 1 1 0 0 2 0 0 2 2 1 2 0 0 2 0 0 16 0 1791.9043 Q15269;A0A0B4J2E5 Q15269 734 749 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.00012367 66.289 By matching By matching By MS/MS By matching 1 1 3 2 0.83155 0.9255 46.658 7 Median 1.1288 1.1137 NaN 1 0 Median 1.0987 0.953 NaN 1 0 Median 0.83155 0.9255 1.5011 3 0 Median NaN NaN NaN 0 0 Median 0.47098 0.48492 77.141 2 0 Median NaN NaN NaN 0 0 Median 6621800 3536800 3085100 473750 250190 223560 401690 206460 195230 5209600 2746900 2462600 0 0 0 536840 333190 203650 0 0 0 36468 223 38319 192947;192948;192949;192950;192951;192952;192953 196150;196151;196152;196153 196152 4 VLFELTGR FLSGMPELRLGLNDRVLFELTGRSKNKSVE RLGLNDRVLFELTGRSKNKSVELEDVKFHQ R V L G R S 0 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 1 0 0 1 0 0 8 0 933.52837 K7EPR4;K7EJJ1;Q9Y6Q5 K7EPR4 192 199 AP1M2 AP-1 complex subunit mu-2 yes no 2 0.039331 37.021 By MS/MS 1 1.6966 1.4506 NaN 1 Median NaN NaN NaN 0 0 Median 1.6966 1.4506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3080600 1167100 1913400 0 0 0 3080600 1167100 1913400 0 0 0 0 0 0 0 0 0 0 0 0 36469 1364 38320 192954 196154 196154 1 VLFEQAFSFHGK PNFTPFPDEWTVEDKVLFEQAFSFHGKTFH EDKVLFEQAFSFHGKTFHRIQQMLPDKSIA K V L G K T 1 0 0 0 0 1 1 1 1 0 1 1 0 3 0 1 0 0 0 1 0 0 12 0 1408.7139 Q9UKL0;Q9P2K3;E9PQE5;B4DV59 Q9UKL0 201 212 RCOR1;RCOR3 REST corepressor 1;REST corepressor 3 yes no 3 0.0029615 36.847 By MS/MS 3 1.0317 1.0926 29.549 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0317 1.0926 29.549 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13606000 6427900 7178100 0 0 0 0 0 0 13606000 6427900 7178100 0 0 0 0 0 0 0 0 0 36470 4312 38321 192955;192956;192957 196155 196155 1 VLFGEITR KLLNIRPPPRAQWIRVLFGEITRLLNHIMA PRAQWIRVLFGEITRLLNHIMAVTTHALDL R V L T R L 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 1 0 0 1 0 0 8 0 933.52837 O75306 O75306 172 179 NDUFS2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial yes yes 2 0.0061436 72.485 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 2 0.73796 0.73788 64.664 7 Median 1.1048 1.0707 NaN 1 0 Median 1.1544 1.0192 NaN 1 0 Median 0.95884 0.95274 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.40006 0.40113 86.197 2 0 Median 0.49124 0.40831 56.16 2 0 Median 31010000 18211000 12800000 7158500 3411500 3747000 2352200 982810 1369400 7417700 3582000 3835700 0 0 0 8612400 6910600 1701800 5469300 3323500 2145800 36471 1657 38322 192958;192959;192960;192961;192962;192963;192964 196156;196157;196158;196159 196156 4 VLFGPEAPK MSDLPVKVTHTETGKVLFGPEAPKASQLDA HTETGKVLFGPEAPKASQLDAWLEMNPGYE K V L P K A 1 0 0 0 0 0 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 9 0 956.53312 P51531;F6VDE0;A0A0U1RQZ9 P51531 605 613 SMARCA2 Probable global transcription activator SNF2L2 yes no 2 0.0044715 60.59 By MS/MS By MS/MS By matching 1 1 1 0.98947 0.83351 15.282 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63526 0.70154 NaN 1 0 Median 1.0486 0.95152 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98947 0.83351 NaN 1 0 Median 12400000 6906900 5493600 0 0 0 0 0 0 10512000 6003500 4508300 1623900 760110 863770 0 0 0 264750 143210 121540 36472 2433 38323 192965;192966;192967 196160;196161;196162 196160 3 VLFLDHPK KGRILVGHALHNDLKVLFLDHPKKKIRDTQ ALHNDLKVLFLDHPKKKIRDTQKYKPFKSQ K V L P K K 0 0 0 1 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 1 0 0 8 0 967.5491 Q9GZR2;A0A0C4DG31 Q9GZR2 334 341 REXO4 RNA exonuclease 4 yes no 2 0.0054254 75.854 By matching By matching By MS/MS By matching 1 1 2 1 0.84775 0.75508 21.318 5 Median NaN NaN NaN 0 0 Median 0.7243 0.63134 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70878 0.60447 NaN 1 0 Median 0.92157 0.9115 17.17 2 0 Median 0.90469 0.75508 NaN 1 0 Median 10472000 5448400 5023700 0 0 0 1245000 636130 608920 0 0 0 1102800 517460 585330 6021500 3312300 2709200 2102900 982550 1120300 36473 3912 38324 192968;192969;192970;192971;192972 196163 196163 1 VLFPGNSTQYNILEGLEK LIVWHPANPAEKIIRVLFPGNSTQYNILEG PGNSTQYNILEGLEKLKHLDFLKQPLATQK R V L E K L 0 0 2 0 0 1 2 2 0 1 3 1 0 1 1 1 1 0 1 1 0 0 18 0 2021.047 P46821;D6RA32;D6RA40 P46821 487 504 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes no 2;3 6.1624E-11 100.55 By MS/MS By matching By matching 2 1 3 0.76193 0.78542 18.846 6 Median 0.8723 0.86577 13.92 2 0 Median 0.70593 0.61999 NaN 1 0 Median 0.73774 0.78624 18.712 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14252000 7518600 6733300 8043200 4093200 3950000 1387300 798480 588830 4821400 2626900 2194500 0 0 0 0 0 0 0 0 0 36474 2347 38325 192973;192974;192975;192976;192977;192978 196164;196165;196166 196164 3 VLFRPSDTANSSNQDALSSNTSLK LRNHPSFYVFNHRGRVLFRPSDTANSSNQD NSSNQDALSSNTSLKLRKLESLRR______ R V L L K L 2 1 3 2 0 1 0 0 0 0 3 1 0 1 1 6 2 0 0 1 0 0 24 1 2551.2514 Q8N4V1 Q8N4V1 99 122 MMGT1 Membrane magnesium transporter 1 yes yes 3 3.3756E-35 139.36 By MS/MS By MS/MS By MS/MS 2 1 2 1.0536 1.0247 19.639 4 Median 0.86267 0.85015 23.344 2 0 Median 1.186 1.0471 NaN 1 0 Median 1.0856 1.1214 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155740000 70928000 84807000 47231000 22394000 24837000 75882000 33773000 42109000 32622000 14761000 17861000 0 0 0 0 0 0 0 0 0 36475 3376 38326 192979;192980;192981;192982;192983 196167;196168;196169;196170;196171;196172 196172 6 VLFSQAQVYELER LHAAAAAAAPRRKRRVLFSQAQVYELERRF RRVLFSQAQVYELERRFKQQKYLSAPEREH R V L E R R 1 1 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 1 2 0 0 13 0 1580.8199 Q9H2Z4;P52952;P43699 Q9H2Z4 194 206 NKX2-4;NKX2-5;NKX2-1 Homeobox protein Nkx-2.4;Homeobox protein Nkx-2.5;Homeobox protein Nkx-2.1 yes no 2 0.00021121 81.017 By MS/MS By matching 2 1 0.6567 0.64843 14.429 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59696 0.61775 20.018 2 0 Median NaN NaN NaN 0 0 Median 0.66275 0.64843 NaN 1 0 Median NaN NaN NaN 0 0 Median 10260000 6496600 3763600 0 0 0 0 0 0 8810700 5674400 3136300 0 0 0 1449500 822170 627360 0 0 0 36476 3949 38327 192984;192985;192986 196173;196174;196175;196176 196174 4 VLFSSNGGVVK HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF EDLKVLFSSNGGVVKGFKFFQKDRKMALIQ K V L V K G 0 0 1 0 0 0 0 2 0 0 1 1 0 1 0 2 0 0 0 3 0 0 11 0 1105.6132 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20 A0A0U1RRM4 529 539 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2 0.00012337 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 6 4 3 4 1.1628 1.0444 29.971 22 Median 1.4676 1.3596 15.767 3 0 Median 1.2379 1.0455 3.1065 2 0 Median 1.0579 1.0394 50.619 6 2 Median 1.2329 1.0297 9.5539 4 0 Median 1.01 0.96632 13.401 3 0 Median 1.1901 0.97143 16.586 4 0 Median 479080000 220140000 258930000 47737000 19537000 28199000 15901000 7425300 8475900 261720000 121400000 140320000 66819000 29259000 37560000 63638000 31765000 31873000 23266000 10762000 12504000 36477 312 38328 192987;192988;192989;192990;192991;192992;192993;192994;192995;192996;192997;192998;192999;193000;193001;193002;193003;193004;193005;193006;193007;193008 196177;196178;196179;196180;196181;196182;196183;196184;196185;196186;196187;196188;196189;196190;196191;196192;196193;196194;196195;196196;196197;196198;196199;196200;196201;196202;196203 196178 27 VLFTEQPETYYK ISKLAPKDYVHCLHKVLFTEQPETYYKWDN LHKVLFTEQPETYYKWDNWPPESDRNFFLR K V L Y K W 0 0 0 0 0 1 2 0 0 0 1 1 0 1 1 0 2 0 2 1 0 0 12 0 1516.745 Q8N201 Q8N201 615 626 INTS1 Integrator complex subunit 1 yes yes 2 0.00083862 89.247 By MS/MS 2 0.84439 0.93175 7.2945 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84439 0.93175 7.2945 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24040000 12070000 11970000 0 0 0 0 0 0 24040000 12070000 11970000 0 0 0 0 0 0 0 0 0 36478 3360 38329 193009;193010 196204;196205 196204 2 VLFTGVVDAR SLRRTKLNQESTAPKVLFTGVVDARGERAV STAPKVLFTGVVDARGERAVLALGGSLAGS K V L A R G 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 3 0 0 10 0 1075.6026 Q14676 Q14676 1895 1904 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0004183 95.502 By MS/MS By MS/MS By MS/MS 3 5 5 1.6059 1.3205 74.101 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1282 1.23 7.4399 3 0 Median 1.6059 1.3205 17.892 5 0 Median NaN NaN NaN 0 0 Median 1.9168 1.56 124.05 5 0 Median 94312000 42812000 51500000 0 0 0 0 0 0 78700000 36796000 41903000 6661600 2545900 4115700 0 0 0 8951100 3470000 5481100 36479 2887 38330 193011;193012;193013;193014;193015;193016;193017;193018;193019;193020;193021;193022;193023 196206;196207;196208;196209;196210;196211;196212;196213;196214 196206 9 VLFTSLADNK KERLQQILNFQNDLKVLFTSLADNKYIILQ QNDLKVLFTSLADNKYIILQKLANVFEQPV K V L N K Y 1 0 1 1 0 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1106.5972 A0A0C4DG40;Q8NF91;E7ENN3 A0A0C4DG40 6424 6433 SYNE1 Nesprin-1 yes no 2 0.0019484 61.999 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 6 9 3 5 1.1786 1.0295 18.003 26 Median 1.2455 1.1563 9.687 2 1 Median 1.1983 1.0178 NaN 1 0 Median 1.0096 1.0047 6.9854 6 0 Median 1.2525 1.0575 28.486 9 0 Median 1.0599 1.0145 10.261 3 0 Median 1.2274 1.0074 11.019 5 0 Median 694770000 329590000 365180000 43179000 19237000 23942000 499730 190050 309680 380110000 188990000 191120000 147810000 64466000 83340000 83520000 39370000 44150000 39663000 17339000 22324000 36480 233 38331 193024;193025;193026;193027;193028;193029;193030;193031;193032;193033;193034;193035;193036;193037;193038;193039;193040;193041;193042;193043;193044;193045;193046;193047;193048;193049 196215;196216;196217;196218;196219;196220;196221;196222;196223;196224;196225;196226;196227;196228;196229;196230;196231;196232;196233;196234;196235 196222 21 VLFYEEELVR HQQEISKIKSELEKKVLFYEEELVRREASH ELEKKVLFYEEELVRREASHVLEVKNVKKE K V L V R R 0 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 0 0 1 2 0 0 10 0 1295.6762 Q9Y5S2 Q9Y5S2 694 703 CDC42BPB Serine/threonine-protein kinase MRCK beta yes yes 3 0.056633 23.32 By MS/MS 1 0.39517 0.33476 NaN 1 Median NaN NaN NaN 0 0 Median 0.39517 0.33476 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2889200 2209200 680000 0 0 0 2889200 2209200 680000 0 0 0 0 0 0 0 0 0 0 0 0 36481 4468 38332 193050 196236 196236 1 VLFYPTLLYTLFR ______________________________ ARVLFYPTLLYTLFRGKVPGRAHRDWYHRI R V L F R G 0 1 0 0 0 0 0 0 0 0 4 0 0 2 1 0 2 0 2 1 0 0 13 0 1644.928 Q8WUK0;E9PQM0 Q8WUK0 14 26 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes no 2 0.033637 26.514 By MS/MS 1 1.0586 1.1189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0586 1.1189 NaN 1 0 Median NaN NaN NaN 0 0 Median 1204600 563770 640870 0 0 0 0 0 0 0 0 0 0 0 0 1204600 563770 640870 0 0 0 36482 3491 38333 193051 196237 196237 1 VLGAGGAGPAPATPSR LVSLGGKDASIFQWRVLGAGGAGPAPATPS LGAGGAGPAPATPSRTPSLSPASSLDV___ R V L S R T 4 1 0 0 0 0 0 4 0 0 1 0 0 0 3 1 1 0 0 1 0 0 16 0 1377.7365 G3V195;B7WPE2;Q32P44;H7C355 G3V195 652 667 EML3 Echinoderm microtubule-associated protein-like 3 yes no 2 7.0748E-05 76.655 By matching By MS/MS 1 1 0.61288 0.58687 45.5 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39769 0.42542 NaN 1 0 Median 0.94453 0.8096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1976900 1131800 845070 0 0 0 0 0 0 1204300 733590 470670 772650 398250 374400 0 0 0 0 0 0 36483 628 38334 193052;193053 196238;196239 196238 2 VLGALLPFLDAQYQK LKTIRLIDPQVDESRVLGALLPFLDAQYQK VLGALLPFLDAQYQKVPVLFHLDVTSSVQT R V L Q K V 2 0 0 1 0 2 0 1 0 0 4 1 0 1 1 0 0 0 1 1 0 0 15 0 1674.9345 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2084 2098 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 2 0.017151 26.673 By MS/MS By matching 1 1 0.96727 0.90002 28.33 2 Median 0.74173 0.73663 NaN 1 0 Median 1.2614 1.0996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8450500 4249600 4201000 4569300 2494200 2075100 3881200 1755300 2125900 0 0 0 0 0 0 0 0 0 0 0 0 36484 189 38335 193054;193055 196240 196240 1 VLGAPVPAFEGR TCSCPAGRGGAVCEKVLGAPVPAFEGRSFL CEKVLGAPVPAFEGRSFLAFPTLRAYHTLR K V L G R S 2 1 0 0 0 0 1 2 0 0 1 0 0 1 2 0 0 0 0 2 0 0 12 0 1211.6663 A0A087X208;A0A494C0G5;A0A494C1I6;O00468 A0A087X208 1231 1242 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment yes no 2 0.023134 31.422 By MS/MS 1 13.944 11.703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13.944 11.703 NaN 1 0 Median 796130 47072 749050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 796130 47072 749050 36485 126 38336 193056 196241 196241 1 VLGATLLPDLIQK HKQADMQEEKNRIERVLGATLLPDLIQKVL ERVLGATLLPDLIQKVLTFALSEEVRPQDT R V L Q K V 1 0 0 1 0 1 0 1 0 1 4 1 0 0 1 0 1 0 0 1 0 0 13 0 1379.8388 E9PLK3;P55786;H0YDG0 E9PLK3 778 790 NPEPPS Puromycin-sensitive aminopeptidase yes no 2 4.2761E-10 174.98 By MS/MS By MS/MS By matching By matching 4 4 2 1 1.0842 0.96197 17.614 11 Median 0.93147 0.82878 3.9131 4 0 Linear 1.1213 0.97226 22.733 4 0 Median NaN NaN NaN 0 0 Median 1.1178 0.98705 3.6404 2 0 Median 1.1557 1.2085 NaN 1 0 Median NaN NaN NaN 0 0 Median 80150000 38639000 41511000 31704000 16362000 15342000 48108000 22126000 25981000 0 0 0 174940 85331 89610 163890 64960 98926 0 0 0 36486 960 38337 193057;193058;193059;193060;193061;193062;193063;193064;193065;193066;193067 196242;196243;196244;196245;196246;196247;196248;196249;196250;196251 196250 10 VLGEAMTGISQNAK MSYFGCLDSVMENSKVLGEAMTGISQNAKN KVLGEAMTGISQNAKNGNLPEFGDAISTAS K V L A K N 2 0 1 0 0 1 1 2 0 1 1 1 1 0 0 1 1 0 0 1 0 0 14 0 1417.7235 Q9Y490 Q9Y490 1402 1415 TLN1 Talin-1 yes yes 2 1.3344E-23 199.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 1 3 1.1652 1.0279 33.458 14 Median 0.88941 0.85702 4.3985 3 0 Median 1.1897 1.0577 17.905 4 0 Median 1.3006 1.4314 NaN 1 0 Median 1.1375 1.0299 14.118 2 0 Median 2.694 2.8197 NaN 1 0 Median 1.1101 0.95123 23.274 3 0 Median 187280000 84829000 102450000 84626000 42269000 42358000 53586000 23449000 30137000 26021000 10914000 15107000 7697800 3372500 4325300 9857600 2412800 7444800 5490800 2410900 3080000 36487 4441 38338;38339 193068;193069;193070;193071;193072;193073;193074;193075;193076;193077;193078;193079;193080;193081 196252;196253;196254;196255;196256;196257;196258;196259;196260;196261;196262;196263;196264;196265;196266;196267;196268;196269;196270;196271;196272;196273;196274 196267 1989 23 VLGELWPLFGGR LICGPNGCGKSSLFRVLGELWPLFGGRLTK LFRVLGELWPLFGGRLTKPERGKLFYVPQR R V L G R L 0 1 0 0 0 0 1 3 0 0 3 0 0 1 1 0 0 1 0 1 0 0 12 0 1342.7398 P28288 P28288 485 496 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.00060469 69.954 By MS/MS By MS/MS By matching 2 2 1 1.2383 1.3008 16.9 5 Median 1.0206 1.0244 2.8838 2 0 Median NaN NaN NaN 0 0 Median 1.2461 1.3073 0.70442 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6964 1.5001 NaN 1 0 Median 10100000 4843000 5256700 6400400 3203700 3196700 0 0 0 3586700 1604400 1982300 0 0 0 0 0 0 112570 34903 77668 36488 2163 38340 193082;193083;193084;193085;193086 196275;196276;196277;196278;196279;196280;196281 196276 7 VLGENAIAVR PFAQSFDIYLTQILRVLGENAIAVRTKAMK TQILRVLGENAIAVRTKAMKCLSEVVAVDP R V L V R T 2 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1040.5978 A0A590UJS4;Q6KC79 A0A590UJS4 1780 1789 NIPBL Nipped-B-like protein yes no 2 0.00057088 105.14 By matching By matching By MS/MS By matching By MS/MS 1 1 2 2 1 0.87596 0.77904 36.266 7 Median 0.7906 0.77101 NaN 1 0 Median 0.78635 0.68573 NaN 1 0 Median 0.59192 0.63998 56.983 2 0 Median 1.4448 1.2092 3.7277 2 0 Median NaN NaN NaN 0 0 Median 0.95685 0.77904 NaN 1 0 Median 18950000 9628900 9321300 2979300 1632600 1346800 994840 620360 374480 11483000 5890200 5592700 2005700 825080 1180600 0 0 0 1487400 660700 826740 36489 488 38341 193087;193088;193089;193090;193091;193092;193093 196282;196283;196284 196282 3 VLGETANILETGETLEPAGAHLVLEEK SEASFTLTAAAEEEKVLGETANILETGETL ETLEPAGAHLVLEEKSSEKNEDFAAHPGED K V L E K S 3 0 1 0 0 0 6 3 1 1 5 1 0 0 1 0 3 0 0 2 0 0 27 0 2832.4757 Q02952 Q02952 1430 1456 AKAP12 A-kinase anchor protein 12 yes yes 3 0.010966 17.716 By MS/MS 2 0.90718 0.79459 5.0874 2 Median NaN NaN NaN 0 0 Median 0.90718 0.79459 5.0874 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3864600 2056000 1808600 0 0 0 3864600 2056000 1808600 0 0 0 0 0 0 0 0 0 0 0 0 36490 2705 38342 193094;193095 196285;196286 196286 2 VLGGNQTLTVNVEGTK EIRSQQQQLVESLHKVLGGNQTLTVNVEGT LGGNQTLTVNVEGTKTLPDDQTEVVIYVVE K V L T K T 0 0 2 0 0 1 1 3 0 0 2 1 0 0 0 0 3 0 0 3 0 0 16 0 1628.8733 Q7Z3B4 Q7Z3B4 216 231 NUP54 Nucleoporin p54 yes yes 2 1.1887E-09 130.01 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 2 2 1.263 1.0549 16.537 11 Median 1.0825 1.0262 NaN 1 1 Median 1.3503 1.1923 19.699 2 0 Median 0.8422 0.87265 13.17 2 0 Median 1.3401 1.1483 1.0546 2 0 Median 1.3023 1.2634 1.7716 2 1 Median 1.1521 0.95749 13.702 2 0 Median 110220000 54113000 56111000 8009100 3901400 4107700 1383800 521110 862660 72426000 37607000 34820000 17457000 7639600 9817900 8243100 3374600 4868600 2704000 1069500 1634500 36491 3239 38343 193096;193097;193098;193099;193100;193101;193102;193103;193104;193105;193106;193107 196287;196288;196289;196290;196291;196292;196293;196294;196295;196296;196297;196298;196299 196290 13 VLGGSFADQK DEALKALGHPAMLSKVLGGSFADQKICQGC AMLSKVLGGSFADQKICQGCPHRYECEESF K V L Q K I 1 0 0 1 0 1 0 2 0 0 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1020.524 Q93008;O00507 Q93008 1713 1722 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0039357 64.654 By MS/MS By MS/MS 1 3 1.3318 1.2122 23.816 4 Median 1.3295 1.2831 NaN 1 0 Median 1.334 1.1898 26.24 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38760000 17391000 21369000 7566700 3537200 4029400 31193000 13854000 17339000 0 0 0 0 0 0 0 0 0 0 0 0 36492 3573 38344 193108;193109;193110;193111 196300;196301 196300 2 VLGIAFSSAR EDDDFMDENQGKGIRVLGIAFSSARDHPVF GKGIRVLGIAFSSARDHPVFCALVNGEGEV R V L A R D 2 1 0 0 0 0 0 1 0 1 1 0 0 1 0 2 0 0 0 1 0 0 10 0 1019.5764 Q7KZ85 Q7KZ85 781 790 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.00073165 100.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1 1.079 1.0051 31.903 7 Median 1.5322 1.4467 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.70746 0.76664 36.861 2 1 Median 0.91757 0.80685 35.678 2 0 Median 1.079 1.1101 NaN 1 0 Median 1.2001 1.0051 NaN 1 0 Median 32277000 16481000 15796000 6623400 2696400 3927000 0 0 0 13761000 8307500 5453500 1197600 526860 670750 9713500 4501600 5211900 981420 448260 533160 36493 3213 38345 193112;193113;193114;193115;193116;193117;193118 196302;196303;196304;196305;196306;196307;196308;196309 196304 8 VLGIQVDTDGSGR GRDRVGVGIRSSYIRVLGIQVDTDGSGRSF IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR R V L G R S 0 1 0 2 0 1 0 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1315.6732 P33992;B1AHB1 P33992 296 308 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 4.2761E-10 174.98 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 4 2 2 1 0.94195 0.90368 32.303 9 Median 0.91681 0.86692 NaN 1 0 Median 1.004 0.86755 56.224 3 1 Median 0.88398 0.91316 5.2948 2 0 Median 1.1841 1.0254 9.864 2 0 Median 0.85587 0.90368 NaN 1 0 Median NaN NaN NaN 0 0 Median 109330000 52714000 56618000 30393000 15528000 14865000 17329000 7207700 10121000 53284000 26243000 27042000 4699500 1941000 2758500 3626100 1794100 1832000 0 0 0 36494 2224 38346 193119;193120;193121;193122;193123;193124;193125;193126;193127;193128 196310;196311;196312;196313;196314;196315;196316;196317;196318 196311 9 VLGIYTFTK TCCICREGYKFQPTKVLGIYTFTKRVALEE KFQPTKVLGIYTFTKRVALEEMENKPRKQQ K V L T K R 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 2 0 1 1 0 0 9 0 1040.5906 Q5T4S7;X6R960 Q5T4S7 4852 4860 UBR4 E3 ubiquitin-protein ligase UBR4 yes no 2 0.0011692 84.498 By MS/MS By matching By matching 1 2 1 1.0808 0.94031 21.153 4 Median 1.1916 1.1909 NaN 1 0 Median 1.0808 0.94031 8.0522 2 0 Median 0.65219 0.71877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12299000 5892000 6407200 7464800 3491600 3973300 3677300 1751800 1925500 1157000 648610 508380 0 0 0 0 0 0 0 0 0 36495 3089 38347 193129;193130;193131;193132 196319 196319 1 VLGLLGALDPYK LKTEQNQGTRREAIRVLGLLGALDPYKHKV AIRVLGLLGALDPYKHKVNIGMIDQSRDAS R V L Y K H 1 0 0 1 0 0 0 2 0 0 4 1 0 0 1 0 0 0 1 1 0 0 12 0 1257.7333 P42345 P42345 887 898 MTOR Serine/threonine-protein kinase mTOR yes yes 2 0.0006573 62.463 By MS/MS By MS/MS By matching 2 3 1 1.1185 0.99741 14.704 6 Median 0.80025 0.77392 4.4569 2 0 Median 1.1951 1.0527 3.0276 3 0 Plateau NaN NaN NaN 0 0 Median 1.1002 0.99935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16638000 7635400 9002900 1603100 862940 740120 14997000 6755500 8241700 0 0 0 38011 16944 21067 0 0 0 0 0 0 36496 2310 38348 193133;193134;193135;193136;193137;193138 196320;196321 196321 2 VLGLSQGSVSDMLSR KLAKNGICQRIFGEKVLGLSQGSVSDMLSR VLGLSQGSVSDMLSRPKPWSKLTQKGREPF K V L S R P 0 1 0 1 0 1 0 2 0 0 3 0 1 0 0 4 0 0 0 2 0 0 15 0 1547.7977 A0A2R8Y852;A0A2R8YDI1;O14529 A0A2R8Y852 925 939 CUX2 Homeobox protein cut-like 2 no no 2 1.6761E-09 122.51 By MS/MS By MS/MS By matching 2 1 1 0.92751 0.95105 19.985 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92024 0.99543 30.068 2 0 Median 1.2107 1.069 NaN 1 0 Median 0.76665 0.84612 NaN 1 0 Median NaN NaN NaN 0 0 Median 12001000 5674400 6326600 0 0 0 0 0 0 7910300 3595600 4314700 835010 353800 481210 3255600 1725000 1530600 0 0 0 36497 388 38349 193139;193140;193141;193142 196322;196323;196324;196325 196322 4 VLGLVLLR IKPKNSKQAEREEKRVLGLVLLRGENLVSM AEREEKRVLGLVLLRGENLVSMTVEGPPPK R V L L R G 0 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 8 0 881.60622 P14678;J3QLE5;P63162 P14678 66 73 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 0.0023516 129.96 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 4 5 5 1 7 5 1.2299 1.1497 12.97 27 Median 1.1142 1.0714 10.54 4 0 Median 1.3472 1.1788 7.7567 5 0 Median 1.16 1.1297 9.9176 5 0 Median 1.3809 1.1497 NaN 1 0 Median 1.1935 1.2195 10.607 7 0 Median 1.2691 1.0073 22.339 5 0 Median 621830000 276230000 345600000 35915000 16292000 19623000 29002000 12087000 16915000 109400000 48574000 60828000 13587000 5596400 7990200 127760000 58357000 69405000 306170000 135330000 170840000 36498 2009 38350 193143;193144;193145;193146;193147;193148;193149;193150;193151;193152;193153;193154;193155;193156;193157;193158;193159;193160;193161;193162;193163;193164;193165;193166;193167;193168;193169 196326;196327;196328;196329;196330;196331;196332;196333;196334;196335;196336;196337;196338;196339;196340;196341;196342;196343;196344;196345;196346;196347;196348;196349;196350;196351;196352 196345 27 VLGMDPLPQMSQR AQFALRLLAFRQIHKVLGMDPLPQMSQRFN HKVLGMDPLPQMSQRFNIHNNRKRRRDSDG K V L Q R F 0 1 0 1 0 2 0 1 0 0 2 0 2 0 2 1 0 0 0 1 0 0 13 0 1470.7323 Q96KR1 Q96KR1 1029 1041 ZFR Zinc finger RNA-binding protein yes yes 2 0.00027712 78.655 By matching By MS/MS By MS/MS 5 2 2 1.1294 1.0405 11.46 8 Median 1.131 1.0215 7.2827 5 0 Median NaN NaN NaN 0 0 Median 1.1277 1.0598 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0647 1.1254 22.821 2 0 Median NaN NaN NaN 0 0 Median 444170000 205900000 238270000 317910000 146510000 171400000 0 0 0 120810000 56513000 64299000 0 0 0 5444700 2872700 2572000 0 0 0 36499 3697 38351;38352 193170;193171;193172;193173;193174;193175;193176;193177;193178 196353;196354 196354 1811 2 VLGMDPLPSK AQHALRLAAFGQLHKVLGMDPLPSKMPKKP GQLHKVLGMDPLPSKMPKKPKNENPVDYTV K V L S K M 0 0 0 1 0 0 0 1 0 0 2 1 1 0 2 1 0 0 0 1 0 0 10 0 1055.5685 Q12906 Q12906 333 342 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.00034968 96.331 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 5 5 4 0.83918 0.75731 12.007 23 Median 0.75339 0.70696 3.7231 2 1 Median 0.80433 0.71361 3.9139 3 0 Median 0.70274 0.73477 13.53 4 0 Median 1.0753 0.93233 12.875 5 0 Median 0.75881 0.77758 7.0584 5 1 Median 0.88758 0.73203 10.459 4 0 Median 303970000 167740000 136230000 18107000 9536500 8570800 21811000 12218000 9592400 98320000 55507000 42812000 10707000 5080100 5627400 132140000 73280000 58864000 22884000 12118000 10766000 36500 2769 38353;38354 193179;193180;193181;193182;193183;193184;193185;193186;193187;193188;193189;193190;193191;193192;193193;193194;193195;193196;193197;193198;193199;193200;193201 196355;196356;196357;196358;196359;196360;196361;196362;196363;196364;196365;196366;196367;196368;196369;196370;196371;196372;196373;196374;196375;196376;196377;196378 196364 1491 24 VLGMTLIQK LRVKDPKKSLDFYTRVLGMTLIQKCDFPIM LDFYTRVLGMTLIQKCDFPIMKFSLYFLAY R V L Q K C 0 0 0 0 0 1 0 1 0 1 2 1 1 0 0 0 1 0 0 1 0 0 9 0 1001.5943 Q04760 Q04760 52 60 GLO1 Lactoylglutathione lyase yes yes 2 0.0013507 96.253 By MS/MS By MS/MS By MS/MS By matching By matching By matching 11 9 4 3 4 1 1.3006 1.214 18.016 32 Median 1.2061 1.1095 10.709 11 0 Median 1.4477 1.2443 6.0297 9 0 Median 1.2066 1.1368 8.3122 4 0 Median 1.4284 1.183 14.147 3 0 Median 1.8605 1.9341 17.569 4 0 Linear 2.9734 2.4586 NaN 1 0 Median 978910000 433220000 545690000 735420000 330200000 405210000 164020000 67349000 96666000 59935000 27939000 31996000 3963200 1585300 2377900 9732200 4017900 5714300 5845900 2122300 3723600 36501 2712 38355;38356 193202;193203;193204;193205;193206;193207;193208;193209;193210;193211;193212;193213;193214;193215;193216;193217;193218;193219;193220;193221;193222;193223;193224;193225;193226;193227;193228;193229;193230;193231;193232;193233 196379;196380;196381;196382;196383;196384;196385;196386;196387;196388;196389;196390;196391;196392;196393;196394;196395;196396;196397;196398;196399;196400;196401;196402;196403;196404;196405 196398 1401 27 VLGQGSFGK EGHEKADPSQFELLKVLGQGSFGKVFLVKK QFELLKVLGQGSFGKVFLVKKISGSDARQL K V L G K V 0 0 0 0 0 1 0 3 0 0 1 1 0 1 0 1 0 0 0 1 0 0 9 0 891.48142 E9PGT3;Q15418;E9PAN7;B1AXG1;B7ZB17;P51812;B4DG22;Q9UK32;B1AXG2;A0A2R8YGB7 B1AXG1 44 52 RPS6KA1;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 no no 2 0.0074886 51.346 By MS/MS By MS/MS 1 1 1.3549 1.2282 2.2931 2 Median 1.3281 1.2483 NaN 1 0 Median 1.3823 1.2084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10338000 4530400 5807900 5073400 2352400 2721000 5264900 2178000 3086900 0 0 0 0 0 0 0 0 0 0 0 0 36502 581;926 38357 193234;193235 196406;196407 196406 2 VLGQLTETGVVSPEQFMK LRPLCTADLNRGFFKVLGQLTETGVVSPEQ QLTETGVVSPEQFMKSFEHMKKSGDYYVTV K V L M K S 0 0 0 0 0 2 2 2 0 0 2 1 1 1 1 1 2 0 0 3 0 0 18 0 1962.0132 Q96EK6;G3V4W4 Q96EK6 56 73 GNPNAT1 Glucosamine 6-phosphate N-acetyltransferase yes no 2 0.0011055 45.257 By MS/MS By MS/MS 1 1 1.6315 1.4643 66.492 2 Median 0.98143 0.91503 NaN 1 0 Median 2.7122 2.3432 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6357700 2670900 3686800 4336200 2314400 2021900 2021400 356540 1664900 0 0 0 0 0 0 0 0 0 0 0 0 36503 1117 38358 193236;193237 196408;196409 196408 2 VLGSDTNCSAPR RFLEEERRTVSDMNRVLGSDTNCSAPRVTI MNRVLGSDTNCSAPRVTISPEFWTWAQTLG R V L P R V 1 1 1 1 1 0 0 1 0 0 1 0 0 0 1 2 1 0 0 1 0 0 12 0 1275.5877 Q9UL41 Q9UL41 123 134 PNMA3 Paraneoplastic antigen Ma3 yes yes 2 0.0012256 55.549 By matching By MS/MS By matching By matching 1 1 1 1 1.2786 1.1471 26.429 4 Median 1.3762 1.3319 NaN 1 0 Median 1.188 0.98796 NaN 1 0 Median 1.4319 1.3911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97972 0.79396 NaN 1 0 Median 15941000 6619800 9321000 2136700 866350 1270300 11077000 4679000 6397800 1940800 733940 1206900 0 0 0 0 0 0 786500 340520 445980 36504 4321 38359 193238;193239;193240;193241 196410;196411;196412;196413 196410 4 VLGSGAFGTVYK ALLRILKETEFKKIKVLGSGAFGTVYKGLW KIKVLGSGAFGTVYKGLWIPEGEKVKIPVA K V L Y K G 1 0 0 0 0 0 0 3 0 0 1 1 0 1 0 1 1 0 1 2 0 0 12 0 1197.6394 Q504U8;E9PFD7;P00533;J3KTI5;H3BLT0;B4DTR1;J3QLU9;A0A0A0MSE1;P04626;Q15303 Q504U8 672 683 EGFR;ERBB2;ERBB4 Receptor protein-tyrosine kinase;Epidermal growth factor receptor;Receptor tyrosine-protein kinase erbB-2;Receptor tyrosine-protein kinase erbB-4;ERBB4 intracellular domain yes no 2 0.0093263 37.556 By MS/MS 1 0.91881 0.88373 NaN 1 Median 0.91881 0.88373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6094800 2649300 3445600 6094800 2649300 3445600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36505 918 38360 193242 196414 196414 1 VLGTAFDPFLGGK AFQVSACAFNKGKLKVLGTAFDPFLGGKNF LKVLGTAFDPFLGGKNFDEKLVEHFCAEFK K V L G K N 1 0 0 1 0 0 0 3 0 0 2 1 0 2 1 0 1 0 0 1 0 0 13 0 1320.7078 Q92598 Q92598 222 234 HSPH1 Heat shock protein 105 kDa yes yes 2 0.00037094 75.294 By MS/MS By MS/MS By MS/MS 1 2 1 1.0767 0.9956 40.828 4 Median 1.2421 1.2013 NaN 1 0 Median 0.83948 0.7275 17.805 2 1 Median 1.5424 1.6196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22254000 10738000 11517000 12434000 5465900 6967700 8212300 4508900 3703400 1608600 762890 845730 0 0 0 0 0 0 0 0 0 36506 3541 38361 193243;193244;193245;193246 196415;196416;196417;196418 196415 4 VLGTAQLK KFEVVHKGGLFKTDRVLGTAQLKLDALEIA GLFKTDRVLGTAQLKLDALEIACEVREILE R V L L K L 1 0 0 0 0 1 0 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 828.5069 Q6P1N0;K7EMP1 Q6P1N0 750 757 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 2 0.066122 31.304 By MS/MS 1 1.3948 1.2272 NaN 1 Median NaN NaN NaN 0 0 Median 1.3948 1.2272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1888300 709650 1178600 0 0 0 1888300 709650 1178600 0 0 0 0 0 0 0 0 0 0 0 0 36507 3153 38362 193247 196419 196419 1 VLGTEAVQDPTK MPPPEPKVRISNLMRVLGTEAVQDPTKVEA LMRVLGTEAVQDPTKVEAHVRAQMAKRQKA R V L T K V 1 0 0 1 0 1 1 1 0 0 1 1 0 0 1 0 2 0 0 2 0 0 12 0 1256.6612 O43395 O43395 484 495 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 1.4426E-10 113.93 By MS/MS By MS/MS 1 1 1.1322 0.98069 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1322 0.98069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5649300 2576500 3072800 0 0 0 0 0 0 0 0 0 5649300 2576500 3072800 0 0 0 0 0 0 36508 1569 38363 193248;193249 196420;196421 196420 2 VLGTEAVQDPTKVEAHVR MPPPEPKVRISNLMRVLGTEAVQDPTKVEA TEAVQDPTKVEAHVRAQMAKRQKAHEEANA R V L V R A 2 1 0 1 0 1 2 1 1 0 1 1 0 0 1 0 2 0 0 4 0 0 18 1 1948.0378 O43395 O43395 484 501 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 3;4 8.784E-14 104.21 By MS/MS By matching By MS/MS By matching 4 1 2 1 0.82314 0.91644 13.556 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80307 0.89399 4.2329 4 1 Median 1.189 1.1324 NaN 1 0 Median 0.88945 0.99283 26.014 2 0 Median 1.1415 1.0014 NaN 1 0 Median 59534000 31490000 28044000 0 0 0 0 0 0 49074000 26467000 22607000 1312800 511210 801570 8411700 4172500 4239200 735450 339720 395730 36509 1569 38364 193250;193251;193252;193253;193254;193255;193256;193257 196422;196423;196424;196425;196426;196427;196428 196422 7 VLGTEDLYDYIDK FHGHDNYDQLVRIAKVLGTEDLYDYIDKYN AKVLGTEDLYDYIDKYNIELDPRFNDILGR K V L D K Y 0 0 0 3 0 0 1 1 0 1 2 1 0 0 0 0 1 0 2 1 0 0 13 0 1542.7454 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2 P68400 248 260 CSNK2A1 Casein kinase II subunit alpha yes no 2 0.00045482 73.067 By matching By MS/MS By MS/MS 1 1 1 1.0862 1.023 5.3726 3 Median 1.0862 1.023 NaN 1 0 Median 1.1541 0.99528 NaN 1 0 Median 1.0576 1.104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10263000 4871100 5391900 973920 476820 497100 1911900 913540 998410 7377100 3480800 3896400 0 0 0 0 0 0 0 0 0 36510 394 38365 193258;193259;193260 196429;196430;196431 196431 3 VLGTEDLYDYIDKYNIELDPR FHGHDNYDQLVRIAKVLGTEDLYDYIDKYN LYDYIDKYNIELDPRFNDILGRHSRKRWER K V L P R F 0 1 1 4 0 0 2 1 0 2 3 1 0 0 1 0 1 0 3 1 0 0 21 1 2543.2431 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2 P68400 248 268 CSNK2A1 Casein kinase II subunit alpha yes no 3 0.016939 23.172 By MS/MS 1 1.0228 1.0353 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0228 1.0353 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4759100 1811200 2947900 0 0 0 0 0 0 4759100 1811200 2947900 0 0 0 0 0 0 0 0 0 36511 394 38366 193261 196432 196432 1 VLGTEELYGYLK FHGQDNYDQLVRIAKVLGTEELYGYLKKYH IAKVLGTEELYGYLKKYHIDLDPHFNDILG K V L L K K 0 0 0 0 0 0 2 2 0 0 3 1 0 0 0 0 1 0 2 1 0 0 12 0 1383.7286 P19784;H3BSA1;H3BV19 P19784 249 260 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.0015711 51.346 By matching By MS/MS By matching 1 2 1 1.117 1.0134 11.018 4 Median 1.1196 1.0446 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0205 1.0194 18.586 2 0 Median 1.1637 0.9831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17259000 7920300 9338300 4301100 2061300 2239800 0 0 0 11022000 4916100 6106200 1935300 942940 992390 0 0 0 0 0 0 36512 2069 38367 193262;193263;193264;193265 196433 196433 1 VLGTEELYGYLKK FHGQDNYDQLVRIAKVLGTEELYGYLKKYH AKVLGTEELYGYLKKYHIDLDPHFNDILGQ K V L K K Y 0 0 0 0 0 0 2 2 0 0 3 2 0 0 0 0 1 0 2 1 0 0 13 1 1511.8235 P19784;H3BSA1;H3BV19 P19784 249 261 CSNK2A2 Casein kinase II subunit alpha yes no 3 0.0064795 27.137 By MS/MS By matching 1 2 1.277 1.2756 10.394 3 Median 1.3674 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1351 1.2152 14.156 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9184600 3828000 5356600 5384400 2332800 3051700 0 0 0 3800100 1495300 2304900 0 0 0 0 0 0 0 0 0 36513 2069 38368 193266;193267;193268 196434;196435 196434 2 VLGTLAAVFVSHLHADHHTGLPSILLQR TFGQLCRHYGDQVDRVLGTLAAVFVSHLHA HADHHTGLPSILLQRERALASLGKPLHPLL R V L Q R E 3 1 0 1 0 1 0 2 4 1 6 0 0 1 1 2 2 0 0 3 0 0 28 0 3001.6614 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 535 562 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 4 0.056083 7.7651 By MS/MS 2 0.93389 0.80794 1.2138 2 Median NaN NaN NaN 0 0 Median 0.93389 0.80794 1.2138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15764000 8306400 7457400 0 0 0 15764000 8306400 7457400 0 0 0 0 0 0 0 0 0 0 0 0 36514 3782 38369 193269;193270 196436;196437 196437 2 VLGTPVETIELTEDR VELTKAGVLARYGVRVLGTPVETIELTEDR VLGTPVETIELTEDRRAFAARMAEIGEHVA R V L D R R 0 1 0 1 0 0 3 1 0 1 2 0 0 0 1 0 3 0 0 2 0 0 15 0 1670.8727 F8VPD4;P27708 F8VPD4 501 515 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 5.6904E-07 87.363 By MS/MS 1 1.0739 1.0331 NaN 1 Median 1.0739 1.0331 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4374300 2172800 2201500 4374300 2172800 2201500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36515 1057 38370 193271 196438 196438 1 VLGTPVETIELTEDRR VELTKAGVLARYGVRVLGTPVETIELTEDR LGTPVETIELTEDRRAFAARMAEIGEHVAP R V L R R A 0 2 0 1 0 0 3 1 0 1 2 0 0 0 1 0 3 0 0 2 0 0 16 1 1826.9738 F8VPD4;P27708 F8VPD4 501 516 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.00022403 40.278 By MS/MS 2 0.91146 0.98257 8.0358 2 Median 0.91146 0.98257 8.0358 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31847000 12966000 18881000 31847000 12966000 18881000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36516 1057 38371 193272;193273 196439;196440;196441;196442 196442 4 VLGTSPEAIDSAENR LPNNMAMALHRQQCRVLGTSPEAIDSAENR VLGTSPEAIDSAENRFKFSRLLDTIGISQP R V L N R F 2 1 1 1 0 0 2 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 15 0 1557.7635 F8VPD4;P27708 F8VPD4 971 985 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 4.243E-19 169.52 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 0.89798 0.79636 12.444 6 Median 0.96891 0.92582 13.493 2 0 Median 0.89037 0.74177 4.5452 2 1 Median 0.74969 0.82792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89902 0.75109 NaN 1 0 Median 109210000 56046000 53160000 54026000 27577000 26449000 49558000 25215000 24343000 4380100 2682000 1698000 0 0 0 0 0 0 1241400 571720 669720 36517 1057 38372 193274;193275;193276;193277;193278;193279 196443;196444;196445;196446;196447;196448;196449;196450;196451 196447 9 VLGTSPEAIDSAENRFK LPNNMAMALHRQQCRVLGTSPEAIDSAENR GTSPEAIDSAENRFKFSRLLDTIGISQPQW R V L F K F 2 1 1 1 0 0 2 1 0 1 1 1 0 1 1 2 1 0 0 1 0 0 17 1 1832.9268 F8VPD4;P27708 F8VPD4 971 987 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 3 0.00033218 52.172 By MS/MS 2 0.84963 0.87072 75.609 2 Median 0.84963 0.87072 75.609 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22995000 14373000 8622400 22995000 14373000 8622400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36518 1057 38373 193280;193281 196452;196453 196452 2 VLGVLEVSR RMRIQKAGGNVRDGRVLGVLEVSRSIGDGQ NVRDGRVLGVLEVSRSIGDGQYKRCGVTSV R V L S R S 0 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 3 0 0 9 0 970.58113 Q9H0C8;F8SNU7;H7C2I8 Q9H0C8 283 291 ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 2 0.00041503 131.06 By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 1.2464 1.088 11.081 7 Median 1.0461 1.0213 3.8424 2 0 Median 1.3134 1.1454 7.2789 2 0 Median 1.1738 1.2109 18.406 2 0 Median 1.3798 1.19 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43868000 19329000 24538000 5914500 2771000 3143500 9261500 3825500 5436100 20492000 9530800 10962000 8199000 3201900 4997100 0 0 0 0 0 0 36519 3923 38374 193282;193283;193284;193285;193286;193287;193288 196454;196455;196456;196457;196458 196456 5 VLGVNVMLR NWKIIRSENFEELLKVLGVNVMLRKIAVAA FEELLKVLGVNVMLRKIAVAAASKPAVEIK K V L L R K 0 1 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 3 0 0 9 0 999.58992 P29373;Q5SYZ4 P29373 22 30 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2 0.0034583 81.784 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.79857 0.80755 112.71 6 Median 0.81974 0.81015 1.1918 2 0 Median 1.426 1.2098 NaN 1 1 Median 0.2097 0.2121 189.81 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5136 0.41784 NaN 1 0 Median 105470000 76831000 28643000 42688000 23104000 19584000 5676700 2340900 3335800 55015000 50154000 4861100 0 0 0 0 0 0 2094300 1232000 862250 36520 2171 38375;38376 193289;193290;193291;193292;193293;193294 196459;196460;196461;196462;196463;196464 196463 920 6 VLGVNVMLRK NWKIIRSENFEELLKVLGVNVMLRKIAVAA EELLKVLGVNVMLRKIAVAAASKPAVEIKQ K V L R K I 0 1 1 0 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 3 0 0 10 1 1127.6849 P29373;Q5SYZ4 P29373 22 31 CRABP2 Cellular retinoic acid-binding protein 2 yes no 2 0.00073487 117.93 By MS/MS By MS/MS 2 2 1.5123 1.4071 60.883 4 Median 0.87782 0.86078 3.3434 2 0 Median 2.7769 2.4517 12.365 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31490000 15080000 16410000 26076000 13773000 12304000 5413400 1307300 4106100 0 0 0 0 0 0 0 0 0 0 0 0 36521 2171 38377;38378 193295;193296;193297;193298 196465;196466;196467 196466 920 3 VLGVPIIVQASQAEK DVSSVPLAIGLTGQRVLGVPIIVQASQAEK VLGVPIIVQASQAEKNRAAAMANNLQKGSA R V L E K N 2 0 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 0 3 0 0 15 0 1550.9032 Q14498;H0Y4X3;A0A0U1RQH7;G3XAC6;Q5QP23 Q14498 218 232 RBM39 RNA-binding protein 39 yes no 2 1.6904E-10 127.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 6 4 4 1 0.95514 0.87962 17.847 16 Median 0.86607 0.82851 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0065 1.0196 24.063 6 0 Median 0.99475 0.89439 6.6894 4 2 Median 0.89675 0.87683 9.2658 4 0 Median 1.0167 0.83673 NaN 1 0 Median 163570000 85690000 77881000 5190900 2898400 2292500 0 0 0 88285000 45987000 42298000 24615000 13171000 11444000 40837000 21299000 19539000 4643300 2335400 2307900 36522 2879 38379 193299;193300;193301;193302;193303;193304;193305;193306;193307;193308;193309;193310;193311;193312;193313;193314 196468;196469;196470;196471;196472;196473;196474;196475;196476;196477;196478;196479;196480;196481;196482;196483;196484;196485;196486;196487;196488;196489;196490;196491;196492;196493;196494;196495;196496 196478 29 VLGYIQLGQK DTQQGPQVDKEQFERVLGYIQLGQKEGAKL EQFERVLGYIQLGQKEGAKLLCGGERFGER R V L Q K E 0 0 0 0 0 2 0 2 0 1 2 1 0 0 0 0 0 0 1 1 0 0 10 0 1117.6495 P30837 P30837 370 379 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 0.00036295 87.323 By MS/MS By matching 1 1 1.1346 1.1008 13.999 2 Median 1.0756 0.99709 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1968 1.2154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13391000 6398200 6993000 12184000 5933800 6250700 0 0 0 1206700 464360 742380 0 0 0 0 0 0 0 0 0 36523 2199 38380 193315;193316 196497 196497 1 VLHAAFIPFGDITDIQIPLDYETEK RVLYVGGLAEEVDDKVLHAAFIPFGDITDI DITDIQIPLDYETEKHRGFAFVEFELAEDA K V L E K H 2 0 0 3 0 1 2 1 1 4 2 1 0 2 2 0 2 0 1 1 0 0 25 0 2844.4586 Q9UNP9;E9PK21 Q9UNP9 21 45 PPIE Peptidyl-prolyl cis-trans isomerase E yes no 3 0.029295 12.314 By MS/MS 1 0.64957 0.63703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64957 0.63703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 790030 429490 360540 0 0 0 0 0 0 790030 429490 360540 0 0 0 0 0 0 0 0 0 36524 4347 38381 193317 196498 196498 1 VLHEAEGHIVTCETNTGEVYR ______________________________ GHIVTCETNTGEVYRGKLIEAEDNMNCQMS K V L Y R G 1 1 1 0 1 0 4 2 2 1 1 0 0 0 0 0 3 0 1 3 0 0 21 0 2413.1332 P62318;H3BT13 P62318 9 29 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes no 2;3;4 3.4067E-67 225.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1.115 1.0014 10.01 8 Median NaN NaN NaN 0 0 Median 1.3568 1.1516 11.694 2 0 Median 0.98141 0.9864 1.9738 3 0 Median NaN NaN NaN 0 0 Median 1.0364 1.0962 NaN 1 0 Median 1.2209 0.9266 2.8878 2 0 Median 530280000 256720000 273560000 0 0 0 12891000 5160600 7730300 513510000 249950000 263570000 0 0 0 1828900 721830 1107100 2043700 886120 1157600 36525 2587 38382 193318;193319;193320;193321;193322;193323;193324;193325 196499;196500;196501;196502;196503;196504;196505;196506;196507;196508;196509;196510;196511;196512;196513 196508 15 VLHFYNVK AEESAIRVGFVTYNKVLHFYNVKSSLAQPQ GFVTYNKVLHFYNVKSSLAQPQMMVVSDVA K V L V K S 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 1 2 0 0 8 0 1018.56 P53992;G5EA31 P53992 555 562 SEC24C Protein transport protein Sec24C yes no 2 0.028216 40.573 By MS/MS 1 1.0412 0.91561 NaN 1 Median NaN NaN NaN 0 0 Median 1.0412 0.91561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2109400 1035000 1074400 0 0 0 2109400 1035000 1074400 0 0 0 0 0 0 0 0 0 0 0 0 36526 1134 38383 193326 196514 196514 1 VLHGEQYLELYKPLPR GGLAEIPGLSINFAKVLHGEQYLELYKPLP LHGEQYLELYKPLPRAGKLKCEAVVADVLD K V L P R A 0 1 0 0 0 1 2 1 1 0 4 1 0 0 2 0 0 0 2 1 0 0 16 1 1954.0676 A0A2R8YD50;P51659;E7EWE5;E7ER27;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 404 419 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 4 3.863E-05 64.675 By MS/MS By MS/MS By MS/MS 3 3 2 0.94996 0.97414 27.897 8 Median 0.91435 0.93762 5.9628 3 2 Median NaN NaN NaN 0 0 Median 0.99853 1.0123 13.881 3 0 Median 0.79589 0.80108 65.21 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52126000 25593000 26534000 11207000 5550400 5656200 0 0 0 23909000 13040000 10869000 17011000 7001900 10009000 0 0 0 0 0 0 36527 393 38384 193327;193328;193329;193330;193331;193332;193333;193334 196515;196516;196517;196518;196519 196517 5 VLHIDLWK NYDKVEKLFQRCLMKVLHIDLWKCYLSYVR FQRCLMKVLHIDLWKCYLSYVRETKGKLPS K V L W K C 0 0 0 1 0 0 0 0 1 1 2 1 0 0 0 0 0 1 0 1 0 0 8 0 1022.5913 Q12996;E9PLP8 Q12996 95 102 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.0079205 65.038 By MS/MS By matching 1 1 0.9979 0.94 12.777 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0077 1.0289 NaN 1 0 Median 0.9882 0.8588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10803000 5546300 5256300 0 0 0 0 0 0 9518900 4995700 4523200 1283700 550610 733070 0 0 0 0 0 0 36528 2777 38385 193335;193336 196520;196521 196520 2 VLHIPEFYVGSILR LKFQIERKDMLERRKVLHIPEFYVGSILRV KVLHIPEFYVGSILRVTTADPYASGKISQF K V L L R V 0 1 0 0 0 0 1 1 1 2 2 0 0 1 1 1 0 0 1 2 0 0 14 0 1641.9243 P49406;S4R3W9;A0A0A0MRF4 P49406 105 118 MRPL19 39S ribosomal protein L19, mitochondrial yes no 2;3 0.00084901 58.223 By MS/MS By MS/MS By matching 2 2 1 0.963 0.93488 23.412 5 Median 1.079 1.046 15.88 2 0 Median 1.0581 0.88264 39.618 2 0 Median 0.88895 0.86804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16104000 7937700 8166100 3900700 1802600 2098100 11877000 5970200 5906900 325910 164890 161010 0 0 0 0 0 0 0 0 0 36529 2380 38386 193337;193338;193339;193340;193341 196522;196523;196524;196525 196524 4 VLHNAQEVEKEPGQR EAFKASRNLQDVVERVLHNAQEVEKEPGQR VLHNAQEVEKEPGQRRALSVQASLMTPVQP R V L Q R R 1 1 1 0 0 2 3 1 1 0 1 1 0 0 1 0 0 0 0 2 0 0 15 1 1732.8856 P49916;K7ERZ5 P49916 454 468 LIG3 DNA ligase 3 yes no 3;4 0.0012048 36.392 By MS/MS By MS/MS 4 4 0.83641 0.87413 19.95 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68851 0.75686 9.5136 4 0 Median 1.0818 1.0382 10.689 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13162000 7073700 6088200 0 0 0 0 0 0 8812600 5011900 3800700 4349400 2061800 2287600 0 0 0 0 0 0 36530 2406 38387 193342;193343;193344;193345;193346;193347;193348;193349 196526;196527;196528;196529;196530;196531;196532;196533;196534 196529 9 VLHPLEGAVVIIFK DSYPDGNITWYRNGKVLHPLEGAVVIIFKK KVLHPLEGAVVIIFKKEMDPVTQLYTMTST K V L F K K 1 0 0 0 0 0 1 1 1 2 2 1 0 1 1 0 0 0 0 3 0 0 14 0 1533.9283 Q13740;F5GXJ9;H7C543 Q13740 176 189 ALCAM CD166 antigen yes no 2 0.00053832 67.704 By MS/MS 1 0.87102 0.76114 NaN 1 Median NaN NaN NaN 0 0 Median 0.87102 0.76114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9240100 4895600 4344400 0 0 0 9240100 4895600 4344400 0 0 0 0 0 0 0 0 0 0 0 0 36531 2836 38388 193350 196535;196536 196535 2 VLHSSNPVPLYAPNLSPPADSR QVKKAAPLIVEVFNKVLHSSNPVPLYAPNL VPLYAPNLSPPADSRIHVPASGYCCLECGD K V L S R I 2 1 2 1 0 0 0 0 1 0 3 0 0 0 5 4 0 0 1 2 0 0 22 0 2330.2019 Q92610;H0YM74 Q92610 558 579 ZNF592 Zinc finger protein 592 yes no 3 1.4582E-14 88.555 By MS/MS By matching 1 1 0.57103 0.58703 14.093 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48318 0.53135 NaN 1 0 Median 0.67485 0.64854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9264400 6505400 2759100 0 0 0 0 0 0 8979200 6332100 2647000 285270 173270 112000 0 0 0 0 0 0 36532 3543 38389 193351;193352 196537 196537 1 VLHTALHSSSSYR KPEPVDKVAAMREFRVLHTALHSSSSYREA FRVLHTALHSSSSYREAGFSRTRTSSLSSL R V L Y R E 1 1 0 0 0 0 0 0 2 0 2 0 0 0 0 4 1 0 1 1 0 0 13 0 1456.7423 H3BV23;Q96S82;H3BSQ2 H3BV23 115 127 UBL7 Ubiquitin-like protein 7 yes no 2;3 0.011536 35.414 By MS/MS By MS/MS By matching 2 2 1 1.0664 1.0888 24.979 5 Median 0.84225 0.8609 33.207 2 0 Median 1.1962 1.0508 14.526 2 0 Median 1.2648 1.301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2802300 1288000 1514300 1406200 679450 726730 1216200 521370 694800 180000 87207 92791 0 0 0 0 0 0 0 0 0 36533 1239 38390 193353;193354;193355;193356;193357 196538;196539 196539 2 VLHVSENPVPLTVR GEEQDVGDAGRLLLRVLHVSENPVPLTVRV RVLHVSENPVPLTVRVSPEVRDVRPYIVGA R V L V R V 0 1 1 0 0 0 1 0 1 0 2 0 0 0 2 1 1 0 0 4 0 0 14 0 1558.8831 Q8N1G4 Q8N1G4 311 324 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 2.9899E-06 152.7 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1 0.89664 0.822 13.864 10 Median 0.86121 0.81134 1.5942 2 0 Median 0.96375 0.83264 3.235 2 0 Median 0.86603 0.89209 11.654 2 0 Median 0.99862 0.83572 2.2593 2 0 Median 0.84653 0.85602 NaN 1 0 Median 0.65598 0.56293 NaN 1 0 Median 109150000 57385000 51763000 64072000 33523000 30549000 7130400 3752900 3377500 28452000 15154000 13298000 7460700 3753800 3707000 1205100 694410 510640 828220 507740 320480 36534 3359 38391 193358;193359;193360;193361;193362;193363;193364;193365;193366;193367 196540;196541;196542;196543;196544;196545;196546;196547;196548;196549;196550;196551;196552 196543 13 VLIAAHGNSLR FWNEEIVPQIKEGKRVLIAAHGNSLRGIVK EGKRVLIAAHGNSLRGIVKHLEGLSEEAIM R V L L R G 2 1 1 0 0 0 0 1 1 1 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1149.6618 P18669;P15259 P18669 181 191 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 yes no 2 0.00012337 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 3 1.1464 1.048 40.845 12 Median 1.11 1.0848 3.6482 3 0 Median 1.1861 0.98218 16.644 4 0 Median 1.1263 1.0812 NaN 1 1 Median 1.1501 0.95213 NaN 1 1 Median 3.8665 3.8869 73.538 3 1 Plateau NaN NaN NaN 0 0 Median 548800000 244210000 304590000 416590000 191520000 225080000 43868000 19943000 23925000 60885000 29144000 31741000 2103400 1089900 1013600 25351000 2515700 22835000 0 0 0 36535 2060 38392 193368;193369;193370;193371;193372;193373;193374;193375;193376;193377;193378;193379 196553;196554;196555;196556;196557;196558;196559;196560;196561;196562;196563;196564;196565 196553 13 VLIALLAR PEERWSPESPLQAPRVLIALLARNAAHALP SPLQAPRVLIALLARNAAHALPTTLGALER R V L A R N 2 1 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 8 0 867.59057 Q8NBJ5 Q8NBJ5 54 61 COLGALT1 Procollagen galactosyltransferase 1 yes yes 2 0.0079829 64.776 By MS/MS By matching By matching 3 2 2 1.3263 1.1499 20.184 7 Median 1.2491 1.2476 27.984 3 0 Plateau 1.3766 1.2232 8.7424 2 0 Median NaN NaN NaN 0 0 Median 1.355 1.1403 6.5468 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9653800 4333200 5320600 3638000 1751100 1886900 5744400 2464400 3280000 0 0 0 271450 117800 153650 0 0 0 0 0 0 36536 3404 38393 193380;193381;193382;193383;193384;193385;193386 196566;196567 196567 2 VLIANNGIAAVK AEFVTRFGGNKVIEKVLIANNGIAAVKCMR IEKVLIANNGIAAVKCMRSIRRWSYEMFRN K V L V K C 3 0 2 0 0 0 0 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1181.7132 Q13085;O00763;A0A087X0W4;S4R3S7 Q13085 121 132 ACACA;ACACB Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase yes no 2 0.0052635 41.448 By matching By MS/MS 2 2 0.89239 0.81147 20.578 4 Median 0.73291 0.71237 23.046 2 0 Median 1.005 0.88334 16.627 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13829000 7008300 6820500 8491700 4546300 3945400 5337100 2462000 2875100 0 0 0 0 0 0 0 0 0 0 0 0 36537 2784 38394 193387;193388;193389;193390 196568 196568 1 VLIDISEK HATCLANAEEQDMQRVLIDISEKEAVNLQQ EEQDMQRVLIDISEKEAVNLQQDAFVVIGR R V L E K E 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 8 0 915.5277 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27;A0A494C163;A0A494C099;D6RCQ8;D6RF77;D6RIS6 H0Y987 105 112 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.023821 64.265 By MS/MS 1 1.3286 1.1129 NaN 1 Median NaN NaN NaN 0 0 Median 1.3286 1.1129 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11422000 4211400 7210900 0 0 0 11422000 4211400 7210900 0 0 0 0 0 0 0 0 0 0 0 0 36538 1165 38395 193391 196569 196569 1 VLIDLIQR ELLRHDFVRRDRPLRVLIDLIQRTKDAVRE RRDRPLRVLIDLIQRTKDAVRELDNLQYRK R V L Q R T 0 1 0 1 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 8 0 968.60187 Q9H2K8 Q9H2K8 285 292 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 2 0.024816 43.124 By MS/MS 1 1.4027 1.5054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4027 1.5054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1429200 498090 931150 0 0 0 0 0 0 1429200 498090 931150 0 0 0 0 0 0 0 0 0 36539 3944 38396 193392 196570;196571 196570 2 VLIDWINDVLVGER DPNSRSDPKLQELMKVLIDWINDVLVGERI KVLIDWINDVLVGERIIVKDLAEDLYDGQV K V L E R I 0 1 1 2 0 0 1 1 0 2 2 0 0 0 0 0 0 1 0 3 0 0 14 0 1639.8934 Q9NVD7;E9PS97 Q9NVD7 100 113 PARVA Alpha-parvin yes no 2 5.0227E-09 122.42 By MS/MS By matching 1 1 1.1221 1.0522 19.265 2 Median NaN NaN NaN 0 0 Median 1.0524 0.91823 NaN 1 0 Median 1.1965 1.2058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12545000 5859000 6686500 0 0 0 10332000 4945900 5386200 2213400 913080 1300300 0 0 0 0 0 0 0 0 0 36540 4127 38397 193393;193394 196572;196573 196573 2 VLIEGSINSVR LLLQPVTISRNEKEKVLIEGSINSVRVSIA EKEKVLIEGSINSVRVSIAVKQADEIEKIL K V L V R V 0 1 1 0 0 0 1 1 0 2 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1185.6717 F8WCF6;P59998;F8WDD7;A0A0A6YYG9;H7C0A3 F8WCF6 61 71 ARPC4-TTLL3;ARPC4 Actin-related protein 2/3 complex subunit 4 yes no 2 0.00011409 142.92 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2534 1.1192 2.329 4 Median 1.1471 1.0731 NaN 1 0 Median 1.358 1.1246 NaN 1 0 Median 1.1602 1.1139 NaN 1 0 Median 1.354 1.1295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 206220000 91144000 115080000 102370000 45904000 56470000 30512000 12967000 17545000 47520000 21804000 25717000 25818000 10469000 15348000 0 0 0 0 0 0 36541 1096 38398 193395;193396;193397;193398 196574;196575;196576;196577;196578;196579;196580;196581;196582;196583 196583 10 VLIEILCTR WSLRKAMQGAGTQERVLIEILCTRTNQEIR AGTQERVLIEILCTRTNQEIREIVRCYQSE R V L T R T 0 1 0 0 1 0 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1115.6373 P20073 P20073 279 287 ANXA7 Annexin A7 yes yes 2 0.039605 33.797 By MS/MS 1 1.2736 1.0867 NaN 1 Median NaN NaN NaN 0 0 Median 1.2736 1.0867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3445200 1197700 2247500 0 0 0 3445200 1197700 2247500 0 0 0 0 0 0 0 0 0 0 0 0 36542 2073 38399 193399 196584 196584 1 VLIFSQMTK LLQKMLKNLKEGGHRVLIFSQMTKMLDLLE KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK R V L T K M 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 9 0 1065.5893 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q8TDI0;K7EMY3;F2Z2R5;Q12873 Q14839 1069 1077 CHD4;CHD5;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.00040442 132.57 By matching By MS/MS By MS/MS By MS/MS 1 4 4 1 1.1592 1.099 41.771 9 Median NaN NaN NaN 0 0 Median 1.3535 1.1816 NaN 1 0 Median 1.1592 1.2724 59.896 3 1 Median 1.2209 1.0605 31.283 4 1 Median 0.73829 0.77358 NaN 1 0 Median NaN NaN NaN 0 0 Median 132050000 61001000 71047000 0 0 0 1136800 458250 678530 95706000 43654000 52052000 9605400 4775800 4829600 25600000 12113000 13486000 0 0 0 36543 246;3471;2766 38400;38401 193400;193401;193402;193403;193404;193405;193406;193407;193408;193409 196585;196586;196587;196588;196589;196590;196591;196592;196593;196594 196587 107 10 VLIFSQMTR VLDKLLPKLKEQGSRVLIFSQMTRVLDILE KEQGSRVLIFSQMTRVLDILEDYCMWRNYE R V L T R V 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 1 0 0 1 0 0 9 0 1093.5954 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 502 510 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.00041503 131.06 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 4 3 1.2618 1.2193 13.971 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0943 1.2029 18.517 4 0 Median 1.5223 1.2896 4.9276 2 0 Median 1.1914 1.2186 9.3442 3 0 Median 1.4174 1.1452 17.342 3 0 Median 124760000 55673000 69084000 0 0 0 0 0 0 58773000 27548000 31225000 2406600 935200 1471400 54602000 23432000 31169000 8975800 3757600 5218200 36544 1608;643;167 38402;38403 193410;193411;193412;193413;193414;193415;193416;193417;193418;193419;193420;193421;193422 196595;196596;196597;196598;196599;196600;196601;196602;196603;196604;196605;196606;196607 196598 80 13 VLIFSQMVR LIDKLLPKLKAGGHRVLIFSQMVRCLDILE KAGGHRVLIFSQMVRCLDILEDYLIQRRYP R V L V R C 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 2 0 0 9 0 1091.6161 Q9HCK8;A0A2R8Y840;H0YJG4;Q9P2D1;H3BTW3;Q3L8U1;Q8TD26;O14647;A0A1B0GTU9;O14646 Q9P2D1 1309 1317 CHD8;CHD7;CHD9;CHD6;CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 0.0012806 83.265 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.2311 1.226 6.3954 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1645 1.2589 4.4721 2 1 Median 1.469 1.2863 NaN 1 0 Median 1.195 1.226 NaN 1 0 Median 1.3178 1.1058 NaN 1 0 Median 28265000 12680000 15586000 0 0 0 0 0 0 14318000 6825800 7492200 258210 90020 168190 12867000 5368100 7499000 822060 395800 426260 36545 4220;4030;1486;321;3469 38404 193423;193424;193425;193426;193427 196608;196609;196610;196611;196612;196613 196612 6 VLIFTQMTR TLAVLLRQLKAEGHRVLIFTQMTRMLDVLE KAEGHRVLIFTQMTRMLDVLEQFLTYHGHL R V L T R M 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 2 0 0 1 0 0 9 0 1107.6111 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 2062 2070 SRCAP Helicase SRCAP yes no 2 0.00046727 117.04 By matching By MS/MS By matching By MS/MS By matching 1 3 3 1 2 1.2931 1.1469 7.732 9 Median NaN NaN NaN 0 0 Median 1.1798 1.0021 NaN 1 0 Median 1.0547 1.1294 5.2179 2 1 Median 1.3225 1.1469 1.7368 3 0 Median 1.0383 1.091 NaN 1 0 Median 1.5236 1.2702 4.961 2 0 Median 17880000 8142300 9737700 0 0 0 600970 242690 358280 12434000 5519000 6915400 741090 333390 407700 3688400 1871500 1816900 415200 175720 239490 36546 3199 38405;38406 193428;193429;193430;193431;193432;193433;193434;193435;193436;193437 196614;196615;196616;196617 196616 1683 4 VLIGENEK SKKQGKQEAADAALRVLIGENEKAERMGFT AADAALRVLIGENEKAERMGFTEVTPVTGA R V L E K A 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 900.49165 P55265;A0A3B3IRQ9 P55265 791 798 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 0.011309 57.177 By MS/MS By MS/MS 1 2 1.1544 1.2184 13.653 3 Median NaN NaN NaN 0 0 Median 1.4113 1.2184 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0369 1.0847 16.815 2 0 Median NaN NaN NaN 0 0 Median 10143000 4747600 5395400 0 0 0 3624600 1562400 2062300 0 0 0 0 0 0 6518400 3185200 3333100 0 0 0 36547 2498 38407 193438;193439;193440 196618;196619;196620;196621 196620 4 VLIGENEKAER SKKQGKQEAADAALRVLIGENEKAERMGFT AALRVLIGENEKAERMGFTEVTPVTGASLR R V L E R M 1 1 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1256.6725 P55265;A0A3B3IRQ9 P55265 791 801 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2;3 5.4388E-05 113.22 By MS/MS By MS/MS By MS/MS 6 7 5 1.0447 1.1405 27.691 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85237 0.93791 37.448 5 3 Median NaN NaN NaN 0 0 Median 1.0447 1.1304 14.881 7 0 Median 1.3746 1.2259 9.6181 5 0 Median 101750000 49239000 52509000 0 0 0 0 0 0 8209200 4693700 3515500 0 0 0 83137000 40156000 42981000 10402000 4389500 6012700 36548 2498 38408 193441;193442;193443;193444;193445;193446;193447;193448;193449;193450;193451;193452;193453;193454;193455;193456;193457;193458 196622;196623;196624;196625;196626;196627;196628;196629;196630;196631;196632;196633;196634;196635;196636;196637;196638;196639;196640;196641;196642;196643;196644;196645 196640 24 VLIGGDETPEGQR LAEGTAIKDLKNPDRVLIGGDETPEGQRAV DRVLIGGDETPEGQRAVQALCAVYEHWVPR R V L Q R A 0 1 0 1 0 1 2 3 0 1 1 0 0 0 1 0 1 0 0 1 0 0 13 0 1369.6838 O60701 O60701 178 190 UGDH UDP-glucose 6-dehydrogenase yes yes 2 4.3287E-07 108.67 By matching By MS/MS 1 1 0.95511 0.85437 4.3457 2 Median 0.8719 0.82851 NaN 1 0 Median 1.0462 0.88103 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23960000 12289000 11671000 15473000 8234600 7238200 8486800 4054000 4432900 0 0 0 0 0 0 0 0 0 0 0 0 36549 1627 38409 193459;193460 196646;196647 196646 2 VLIGHISK NFLMSDEEYDDRTARVLIGHISKKMNKQTF YDDRTARVLIGHISKKMNKQTFPEHCSLCK R V L S K K 0 0 0 0 0 0 0 1 1 2 1 1 0 0 0 1 0 0 0 1 0 0 8 0 865.53854 Q9UKN8 Q9UKN8 729 736 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.023183 44.349 By MS/MS By matching By matching By matching 1 2 1 2 1.2844 1.1597 10.932 6 Median NaN NaN NaN 0 0 Median 1.4589 1.287 NaN 1 0 Median 1.0289 1.0825 6.388 2 0 Median 1.4766 1.2841 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2844 1.0841 12.886 2 0 Median 7140600 3161200 3979400 0 0 0 2517400 1030100 1487300 2651700 1309100 1342600 924060 372020 552030 0 0 0 1047500 450050 597440 36550 4314 38410 193461;193462;193463;193464;193465;193466 196648;196649 196649 2 VLIIGGGDGGVLR MIANLPLCSHPNPRKVLIIGGGDGGVLREV RKVLIIGGGDGGVLREVVKHPSVESVVQCE K V L L R E 0 1 0 1 0 0 0 5 0 2 2 0 0 0 0 0 0 0 0 2 0 0 13 0 1224.719 P19623;K7ESL0 P19623 97 109 SRM Spermidine synthase yes no 2 2.6909E-05 93.111 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.2076 1.0152 21.145 5 Median 1.1272 1.0828 12.895 2 0 Median 1.0952 0.9108 NaN 1 0 Median 1.5976 1.5556 NaN 1 0 Median 1.2076 1.0152 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65981000 28919000 37063000 50386000 21428000 28958000 13212000 6444400 6767400 2030800 905590 1125200 352420 140390 212030 0 0 0 0 0 0 36551 2068 38411 193467;193468;193469;193470;193471 196650;196651;196652;196653;196654 196651 5 VLIIGSGGR ______________________________ ______________________________ R V L G R E 0 1 0 0 0 0 0 3 0 2 1 0 0 0 0 1 0 0 0 1 0 0 9 0 870.5287 P22102;F8WD69;C9JBJ1;C9JTV6;C9JZG2;C9JKQ7 P22102 5 13 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase yes no 2 0.0012859 83.206 By MS/MS By MS/MS 1 2 1.3602 1.1406 9.9213 3 Median 1.0376 0.99701 NaN 1 0 Median 1.3984 1.1748 4.1719 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27894000 12591000 15303000 9327800 4624700 4703100 18566000 7966300 10600000 0 0 0 0 0 0 0 0 0 0 0 0 36552 2098 38412 193472;193473;193474 196655;196656;196657 196657 3 VLIMHGGLFSEDGVTLDDIR EVFEWLPLAQCINGKVLIMHGGLFSEDGVT GGLFSEDGVTLDDIRKIERNRQPPDSGPMC K V L I R K 0 1 0 3 0 0 1 3 1 2 3 0 1 1 0 1 1 0 0 2 0 0 20 0 2186.1042 P53041;H0YDU8;A8MU39 P53041 348 367 PPP5C Serine/threonine-protein phosphatase 5;Serine/threonine-protein phosphatase yes no 3 0.0081647 30.416 By MS/MS 1 0.74733 0.63454 NaN 1 Median NaN NaN NaN 0 0 Median 0.74733 0.63454 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4501700 2565400 1936300 0 0 0 4501700 2565400 1936300 0 0 0 0 0 0 0 0 0 0 0 0 36553 1177 38413 193475 196658 196658 1 VLIPVFALGR DFLKKVHETVERGGKVLIPVFALGRAQELC ERGGKVLIPVFALGRAQELCILLETFWERM K V L G R A 1 1 0 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 2 0 0 10 0 1083.6805 C9J979;Q5TA45;C9IYS7;A0A087WYI0 C9J979 265 274 CPSF3L Integrator complex subunit 11 yes no 2 0.069222 25.737 By matching By MS/MS By matching 1 2 1 0.95877 0.92294 5.3211 4 Median NaN NaN NaN 0 0 Median 1.0708 0.9403 NaN 1 0 Median 0.85746 0.89416 1.8432 2 0 Median 1.1473 0.99776 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2619000 1325000 1294000 0 0 0 656450 298380 358070 1820600 961940 858650 141940 64703 77238 0 0 0 0 0 0 36554 681 38414 193476;193477;193478;193479 196659 196659 1 VLIPVKQYPK YLDLFSHKNMKLKERVLIPVKQYPKFNFVG KLKERVLIPVKQYPKFNFVGKILGPQGNTI R V L P K F 0 0 0 0 0 1 0 0 0 1 1 2 0 0 2 0 0 0 1 2 0 0 10 1 1183.7329 Q07666;Q5VWX1 Q07666 160 169 KHDRBS1;KHDRBS2 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2 yes no 3 0.021047 37.556 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2508600 0 2508600 0 0 0 0 0 0 0 0 0 2508600 0 2508600 0 0 0 0 0 0 36555 2731 38415 193480;193481 196660;196661 196661 2 VLIQVGYEPLPPTIGR GSGLTILSQPLMYVKVLIQVGYEPLPPTIG LIQVGYEPLPPTIGRNIFGRQVCQLPGLFS K V L G R N 0 1 0 0 0 1 1 2 0 2 2 0 0 0 3 0 1 0 1 2 0 0 16 0 1750.9982 Q9Y6C9;E9PIE4 Q9Y6C9 26 41 MTCH2 Mitochondrial carrier homolog 2 yes no 2 5.6725E-05 78.653 By MS/MS By MS/MS By MS/MS By matching By matching By MS/MS 2 2 1 1 1 2 0.80986 0.72986 22.342 9 Median 0.60789 0.57092 12.28 2 0 Median 0.89363 0.75228 12.19 2 0 Median 0.80768 0.77393 NaN 1 0 Median 0.73586 0.62057 NaN 1 0 Median 1.1946 1.1629 NaN 1 0 Median 0.91094 0.73742 1.4576 2 0 Median 53548000 28977000 24570000 25226000 14819000 10407000 16220000 8085200 8135200 925500 594070 331430 191520 98865 92659 990620 504370 486250 9993700 4875800 5117900 36556 4488 38416 193482;193483;193484;193485;193486;193487;193488;193489;193490 196662;196663;196664;196665;196666;196667;196668;196669;196670;196671;196672;196673;196674 196665 13 VLISTDVWAR ERESIMKEFRSGASRVLISTDVWARGLDVP SGASRVLISTDVWARGLDVPQVSLIINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 2 0 0 10 0 1158.6397 P38919;I3L3H2 P38919 330 339 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes no 2 0.00040727 111.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 3 5 1.122 1.0796 16.343 12 Median 1.3588 1.2867 NaN 1 1 Median 1.3831 1.1831 8.2811 2 0 Median 1.1934 1.1545 NaN 1 0 Median 1.3097 1.128 NaN 1 0 Median 1.0284 1.071 8.9673 3 0 Median 1.0522 0.90251 11.231 4 0 Median 155380000 69541000 85840000 19291000 7422400 11869000 2953700 1173400 1780200 66455000 29593000 36861000 12670000 5613100 7057000 46762000 22273000 24489000 7248500 3464900 3783600 36557 2278 38417 193491;193492;193493;193494;193495;193496;193497;193498;193499;193500;193501;193502;193503;193504;193505 196675;196676;196677;196678;196679;196680;196681;196682;196683;196684;196685;196686;196687;196688;196689;196690 196678 16 VLITTDLLAR ERDVIMREFRSGSSRVLITTDLLARGIDVQ SGSSRVLITTDLLARGIDVQQVSLVINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 2 0 0 1 0 0 10 0 1113.6758 P60842;Q14240;E7EQG2 P60842 325 334 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.00039551 111.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 7 4 3 6 5 1.2126 1.1084 35.592 34 Median 1.1773 1.1326 10.724 9 0 Median 1.1152 0.94167 9.297 7 0 Median 1.2579 1.2434 5.2062 4 1 Median 1.1233 0.99919 8.9913 3 0 Median 2.4393 2.4332 8.1192 6 1 Median 1.1383 0.97301 9.8495 5 0 Median 3105400000 1430400000 1675000000 509920000 227490000 282430000 1849700000 868810000 980930000 325300000 138350000 186950000 356410000 173620000 182790000 41013000 11453000 29560000 23057000 10693000 12364000 36558 2529;2867 38418 193506;193507;193508;193509;193510;193511;193512;193513;193514;193515;193516;193517;193518;193519;193520;193521;193522;193523;193524;193525;193526;193527;193528;193529;193530;193531;193532;193533;193534;193535;193536;193537;193538;193539 196691;196692;196693;196694;196695;196696;196697;196698;196699;196700;196701;196702;196703;196704;196705;196706;196707;196708;196709;196710;196711;196712;196713;196714;196715;196716;196717;196718;196719;196720;196721;196722;196723;196724;196725;196726;196727;196728;196729;196730;196731;196732;196733;196734;196735;196736;196737;196738;196739;196740;196741;196742;196743 196692 53 VLITTLITAGR GEYVFPAKKKLQEYRVLITTLITAGRLVSA QEYRVLITTLITAGRLVSAQFPIDHFTHIF R V L G R L 1 1 0 0 0 0 0 1 0 2 2 0 0 0 0 0 3 0 0 1 0 0 11 0 1156.718 Q9HCE1;Q5JR04 Q9HCE1 618 628 MOV10 Putative helicase MOV-10 yes no 2 0.0020665 55.549 By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1.2713 1.3112 24.269 6 Median 1.2034 1.1976 5.9757 2 0 Median 1.7274 1.5073 NaN 1 0 Median 0.75135 0.79212 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2919 1.3761 NaN 1 0 Median 1.7829 1.51 NaN 1 0 Median 6365500 2711900 3653700 2844900 1310900 1534000 1169900 404610 765290 473390 285880 187510 0 0 0 1717400 653260 1064200 159880 57203 102680 36559 4029 38419 193540;193541;193542;193543;193544;193545 196744;196745 196744 2 VLIVSEDPELPYMRPPLSK FAAARSIRARDPGARVLIVSEDPELPYMRP SEDPELPYMRPPLSKELWFSDDPNVTKTLR R V L S K E 0 1 0 1 0 0 2 0 0 1 3 1 1 0 4 2 0 0 1 2 0 0 19 1 2182.1708 O95831 O95831 159 177 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 3 1.047E-06 53.278 By MS/MS By MS/MS 2 1 0.73306 0.71914 21.917 3 Median 0.60599 0.61144 28.022 2 0 Median 0.7887 0.71914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50391000 31755000 18636000 40280000 26304000 13976000 10111000 5450600 4660000 0 0 0 0 0 0 0 0 0 0 0 0 36560 1797 38420 193546;193547;193548 196746;196747;196748;196749 196747 4 VLIVVPFR GDDDDFRDQGLTRPKVLIVVPFREAALRVV QGLTRPKVLIVVPFREAALRVVQLFISLLE K V L F R E 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 8 0 941.60622 Q68CQ4 Q68CQ4 355 362 DIEXF Digestive organ expansion factor homolog yes yes 2 0.020489 46.37 By MS/MS By matching By matching 1 1 1 1.0808 1.1581 20.592 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0808 1.1581 NaN 1 0 Median 1.1985 1.0073 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87322 0.77217 NaN 1 0 Median 1656000 727630 928330 0 0 0 0 0 0 1311700 550920 760730 286220 142850 143370 0 0 0 58088 33858 24230 36561 3123 38421 193549;193550;193551 196750 196750 1 VLIVYAHQEPK ______________________________ AGKKVLIVYAHQEPKSFNGSLKNVAVDELS K V L P K S 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1295.7238 Q5TD05;Q5TD07;P16083;A2A2U4 Q5TD05 6 16 NQO2 Ribosyldihydronicotinamide dehydrogenase [quinone] yes no 2;3 0.00067336 56.258 By MS/MS By MS/MS 2 2 1.2822 1.1482 37.113 4 Median 0.94464 0.88765 4.4356 2 0 Median 1.9278 1.6403 18.478 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9839000 4973400 4865600 6821100 3955100 2865900 3017900 1018300 1999600 0 0 0 0 0 0 0 0 0 0 0 0 36562 2023 38422 193552;193553;193554;193555 196751;196752;196753;196754;196755;196756;196757 196755 7 VLKDQPPNSVEGLLNALR AFAKTSKIDMKGCIKVLKDQPPNSVEGLLN DQPPNSVEGLLNALRYTTKHLNDETTSKQI K V L L R Y 1 1 2 1 0 1 1 1 0 0 4 1 0 0 2 1 0 0 0 2 0 0 18 1 1962.0898 Q9NUQ9 Q9NUQ9 287 304 FAM49B Protein FAM49B yes yes 3 0.0075448 24.287 By MS/MS By matching 1 1 0.70392 0.68258 9.2169 2 Median 0.73119 0.72855 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67766 0.63951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4352800 2483100 1869700 4305400 2456400 1849000 0 0 0 0 0 0 47357 26736 20621 0 0 0 0 0 0 36563 4120 38423 193556;193557 196758 196758 1 VLKDSLHEKFPDAGEDELLK SSVDKIPYGMRFIAKVLKDSLHEKFPDAGE LHEKFPDAGEDELLKIIGNLLYYRYMNPAI K V L L K I 1 0 0 3 0 0 3 1 1 0 4 3 0 1 1 1 0 0 0 1 0 0 20 2 2282.1794 P46940;A0A0J9YXZ5;H0YLE8 P46940 1166 1185 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 3;4 9.4258E-09 71.853 By MS/MS 2 0.89069 0.97518 1.4447 2 Median 0.89069 0.97518 1.4447 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53111000 27030000 26081000 53111000 27030000 26081000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36564 2350 38424 193558;193559 196759;196760;196761 196760 3 VLKDVYALK AMLIKGGNANATVTKVLKDVYALKKPYGVL NATVTKVLKDVYALKKPYGVLYKKKNITRP K V L L K K 1 0 0 1 0 0 0 0 0 0 2 2 0 0 0 0 0 0 1 2 0 0 9 1 1047.6328 Q9H7B2;Q5VXN0 Q9H7B2 48 56 RPF2 Ribosome production factor 2 homolog yes no 2 0.0044576 89.355 By MS/MS 1 1.0008 1.0621 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0008 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median 24741000 11939000 12802000 0 0 0 0 0 0 0 0 0 0 0 0 24741000 11939000 12802000 0 0 0 36565 3980 38425 193560 196762 196762 1 VLKEEGNELVK TKNRVPSAGDVEKARVLKEEGNELVKKGNH EKARVLKEEGNELVKKGNHKKAIEKYSESL R V L V K K 0 0 1 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 0 2 0 0 11 1 1256.6976 Q15785 Q15785 195 205 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2;3 6.2128E-05 109.66 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 5 1.3015 1.209 13.611 12 Median 1.1794 1.1499 17.25 3 0 Median 1.3503 1.2161 0.20747 2 0 Median 1.3251 1.3873 5.2995 2 0 Median 1.3291 1.1671 11.628 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64995000 26845000 38150000 10251000 4057600 6193500 13588000 5768400 7819500 11295000 4661700 6633400 29861000 12357000 17504000 0 0 0 0 0 0 36566 2971 38426 193561;193562;193563;193564;193565;193566;193567;193568;193569;193570;193571;193572 196763;196764;196765;196766;196767;196768;196769;196770;196771;196772;196773;196774;196775;196776;196777 196768 15 VLKEIVER LLEGKEKPVCGTTYKVLKEIVERVFQSNYF VCGTTYKVLKEIVERVFQSNYFDSTHNHQN K V L E R V 0 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 1 984.59678 Q14444;G3V153 Q14444 232 239 CAPRIN1 Caprin-1 yes no 2 0.03835 64.265 By MS/MS 2 0.92265 0.9499 17.505 2 Median 0.92265 0.9499 17.505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4325400 2112000 2213500 4325400 2112000 2213500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36567 2878 38427 193573;193574 196778 196778 1 VLKEQYLGYR VALAAQLQSIHENVKVLKEQYLGYRKMFLG HENVKVLKEQYLGYRKMFLGDAVDVFETRR K V L Y R K 0 1 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 2 1 0 0 10 1 1267.6925 Q5JRG1;H7BYF2;Q9BVL2 Q5JRG1 359 368 NUPL1 Nucleoporin p58/p45 yes no 3 0.00066292 72.607 By MS/MS By MS/MS 1 2 0.94921 1.008 13.885 3 Median 1.0173 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88259 0.89958 16.092 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10822000 4905400 5917100 1494000 683100 810870 0 0 0 9328500 4222300 5106200 0 0 0 0 0 0 0 0 0 36568 1247 38428 193575;193576;193577 196779;196780 196780 2 VLKGEVTPDHLIR MFNLKDPKNNILFKKVLKGEVTPDHLIRMS KKVLKGEVTPDHLIRMSPEELASKELAAWR K V L I R M 0 1 0 1 0 0 1 1 1 1 2 1 0 0 1 0 1 0 0 2 0 0 13 1 1475.846 Q92576;E7ER40;E7EVH3 Q92576 1000 1012 PHF3 PHD finger protein 3 yes no 3 0.00093749 46.069 By MS/MS 1 0.7977 0.95656 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7977 0.95656 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6185600 3343000 2842700 0 0 0 0 0 0 6185600 3343000 2842700 0 0 0 0 0 0 0 0 0 36569 3539 38429 193578 196781 196781 1 VLKPIQLTDPGK PGGGGEVVFSCPVRKVLKPIQLTDPGKIKR VRKVLKPIQLTDPGKIKRIRGMAYSVRVSP K V L G K I 0 0 0 1 0 1 0 1 0 1 2 2 0 0 2 0 1 0 0 1 0 0 12 1 1307.7813 Q9Y2P8;Q5VZU3 Q9Y2P8 176 187 RCL1 RNA 3-terminal phosphate cyclase-like protein yes no 2;3 0.0089225 37.344 By matching By MS/MS By matching 1 3 2 0.92461 0.88211 14.862 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0089 0.89835 NaN 1 0 Median 0.81962 0.86617 10.411 3 0 Median 1.0982 0.94423 29.223 2 0 Median 24728000 11597000 13131000 0 0 0 0 0 0 0 0 0 1365300 734890 630360 20079000 9284600 10795000 3283600 1577600 1706000 36570 4385 38430 193579;193580;193581;193582;193583;193584 196782;196783;196784;196785;196786 196786 5 VLKQVHPDTGISSK RKRSRKESYSVYVYKVLKQVHPDTGISSKA KVLKQVHPDTGISSKAMGIMNSFVNDIFER K V L S K A 0 0 0 1 0 1 0 1 1 1 1 2 0 0 1 2 1 0 0 2 0 0 14 1 1507.8358 Q16778;P33778;P23527;P06899;Q8N257;Q96A08;U3KQK0;Q99880;Q99879;Q99877;Q93079;Q5QNW6;P62807;P58876;P57053;O60814 U3KQK0 45 58 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST1H2BA;HIST1H2BN;HIST1H2BL;HIST1H2BM;HIST1H2BH;HIST2H2BF;HIST1H2BC;HIST1H2BD;H2BFS;HIST1H2BK Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Histone H2B type 1-A;Histone H2B;Histone H2B type 1-L;Histone H2B type 1-M;Histone H2B type 1-N;Histone H2B type 1-H;Histone H2B type 2-F;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type F-S;Histone H2B type 1-K no no 2;3 0.00028168 57.034 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 1 7 5 0.89531 0.92203 16.88 15 Median 1.0728 1.0952 NaN 1 0 Median 1.3284 1.1742 NaN 1 0 Median 0.89531 0.92203 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80005 0.83583 7.8657 7 0 Median 1.195 1.0079 19.194 5 0 Median 45495000 24114000 21381000 184560 93204 91357 767990 352560 415430 527920 288070 239850 0 0 0 36462000 19887000 16574000 7553200 3492900 4060200 36571 2117;2521 38431 193585;193586;193587;193588;193589;193590;193591;193592;193593;193594;193595;193596;193597;193598;193599 196787;196788;196789;196790;196791;196792;196793 196790 7 VLLALHDR KPIPGDLYRACLYERVLLALHDRAPQLKIS RACLYERVLLALHDRAPQLKISDDRLTVVG R V L D R A 1 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 935.55525 F5H8F7;Q9UBL3 F5H8F7 242 249 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes no 2 0.0061436 72.485 By matching By matching By MS/MS By matching 1 1 1 1 1.0524 1.0853 12.44 4 Median 1.0612 1.0775 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0437 1.0931 NaN 1 0 Median 1.3448 1.1586 NaN 1 0 Median 0.82616 0.87188 NaN 1 0 Median NaN NaN NaN 0 0 Median 8936000 4215800 4720300 1332000 668390 663620 0 0 0 5192700 2525000 2667700 1676000 713030 962960 735350 309380 425980 0 0 0 36572 1048 38432 193600;193601;193602;193603 196794;196795 196794 2 VLLASSFVPIYAGLK NHLVSTFSSREDLIKVLLASSFVPIYAGLK VLLASSFVPIYAGLKLVEYKGQKWVDGGLT K V L L K L 2 0 0 0 0 0 0 1 0 1 3 1 0 1 1 2 0 0 1 2 0 0 15 0 1576.9229 C9IZF6;P41247 C9IZF6 138 152 PNPLA4 Patatin-like phospholipase domain-containing protein 4 yes no 2 0.00016736 76.465 By MS/MS By matching By matching By matching 1 1 1 1 0.89477 0.86763 33.774 4 Median 0.77702 0.72398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80987 0.73198 NaN 1 0 Median 1.8478 1.476 NaN 1 0 Median 0.98856 1.0284 NaN 1 0 Median NaN NaN NaN 0 0 Median 5051300 2707500 2343800 4464200 2376900 2087400 0 0 0 155560 96480 59078 77286 35972 41314 354250 198160 156090 0 0 0 36573 663 38433 193604;193605;193606;193607 196796;196797 196796 2 VLLATLSIPITPER RKNLTQDEMQRMSTRVLLATLSIPITPERT RVLLATLSIPITPERTDIARLLDMDGIIVE R V L E R T 1 1 0 0 0 0 1 0 0 2 3 0 0 0 2 1 2 0 0 1 0 0 14 0 1521.913 Q14152 Q14152 322 335 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 1.0024E-16 189.72 By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 2 0.88488 0.83515 9.453 10 Median 0.84331 0.83411 6.6827 3 0 Median 0.90641 0.78547 6.1413 3 0 Median 0.85734 0.93662 NaN 1 0 Median 0.9238 0.80853 NaN 1 0 Median 0.90876 0.95525 1.3969 2 0 Median NaN NaN NaN 0 0 Median 99612000 53046000 46567000 26825000 14718000 12107000 68413000 36132000 32282000 2065700 1030600 1035100 372670 201670 171000 1935600 963920 971650 0 0 0 36574 2860 38434 193608;193609;193610;193611;193612;193613;193614;193615;193616;193617 196798;196799;196800;196801;196802;196803;196804;196805;196806;196807;196808;196809;196810;196811;196812;196813 196809 16 VLLDAPCSGTGVISK YDGRQFPKVVGGFDRVLLDAPCSGTGVISK VLLDAPCSGTGVISKDPAVKTNKDEKDILR R V L S K D 1 0 0 1 1 0 0 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 15 0 1515.7967 P46087 P46087 457 471 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 7.072E-07 84.718 By MS/MS 1 0.79991 0.81854 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79991 0.81854 NaN 1 1 Median NaN NaN NaN 0 0 Median 9265100 5271100 3994000 0 0 0 0 0 0 0 0 0 0 0 0 9265100 5271100 3994000 0 0 0 36575 2338 38435 193618 196814 196814 1 VLLDDTQSEAAR VEHRKKAQAELASFKVLLDDTQSEAARVLA SFKVLLDDTQSEAARVLADNLKLKKELQSN K V L A R V 2 1 0 2 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 12 0 1316.6572 Q14789 Q14789 2082 2093 GOLGB1 Golgin subfamily B member 1 yes yes 2 5.032E-22 163.94 By MS/MS By MS/MS By MS/MS 1 1 1 1.202 1.1071 10.479 2 Median 1.2234 1.1922 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1811 1.028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17552000 6601200 10951000 16064000 6130700 9933600 0 0 0 0 0 0 1488100 470570 1017500 0 0 0 0 0 0 36576 2900 38436 193619;193620;193621 196815;196816;196817 196815 3 VLLDFLDQHPFSFTPLIQR VCRDRLEKTIILFTKVLLDFLDQHPFSFTP FLDQHPFSFTPLIQRSLEFSVSYVFTEVGE K V L Q R S 0 1 0 2 0 2 0 0 1 1 4 0 0 3 2 1 1 0 0 1 0 0 19 0 2285.2208 Q9UI26;F8WDV0 Q9UI26 276 294 IPO11 Importin-11 yes no 3 0.056434 8.7088 By matching By MS/MS 1 2 0.86239 0.80279 3.9284 3 Median 0.82356 0.82188 NaN 1 0 Median 0.88836 0.78173 3.7602 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3190800 1673100 1517700 1533900 794040 739880 1656900 879040 777850 0 0 0 0 0 0 0 0 0 0 0 0 36577 4288 38437 193622;193623;193624 196818 196818 1 VLLDIFTGVR GEKRKAADETLCQTKVLLDIFTGVRLYLPP LCQTKVLLDIFTGVRLYLPPSTPDFSRLRR K V L V R L 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 2 0 0 10 0 1131.6652 P49916 P49916 933 942 LIG3 DNA ligase 3 yes yes 2 0.012347 41.448 By matching By matching By MS/MS By matching By matching By matching 1 1 1 2 1 1 1.2108 1.1382 11.769 7 Median 0.93342 0.93566 NaN 1 0 Median 1.3658 1.2011 NaN 1 0 Median 1.0642 1.1382 NaN 1 0 Median 1.4578 1.229 0.18841 2 0 Median 0.92566 0.9751 NaN 1 0 Median 1.2108 1.0002 NaN 1 0 Median 6272800 3060600 3212200 295090 177270 117820 435660 175210 260450 4321100 2161700 2159300 593690 222390 371300 424410 240920 183490 202880 83080 119800 36578 2406 38438 193625;193626;193627;193628;193629;193630;193631 196819;196820 196820 2 VLLDNVENK TLDSFMQHDVQELCRVLLDNVENKMKGTCV VQELCRVLLDNVENKMKGTCVEGTIPKLFR R V L N K M 0 0 2 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1042.5659 Q93009;H3BND8;F5H2X1 Q93009 302 310 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.00081314 96.492 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1.0076 0.87782 23.985 7 Median 1.0195 0.99242 NaN 1 1 Median 0.96919 0.81576 NaN 1 0 Median 0.99199 0.99236 17.343 2 0 Median 1.1817 1.0026 18.911 2 0 Median 0.54924 0.56415 NaN 1 0 Median NaN NaN NaN 0 0 Median 72622000 36073000 36549000 5980000 2646800 3333200 27681000 14097000 13584000 29148000 14563000 14585000 9025000 4219500 4805500 788550 547060 241490 0 0 0 36579 3574 38439 193632;193633;193634;193635;193636;193637;193638 196821;196822;196823;196824;196825;196826;196827;196828;196829 196822 9 VLLDQLR DGRLLEYDTVTREVKVLLDQLRFPNGVQLS DTVTREVKVLLDQLRFPNGVQLSPAEDFVL K V L L R F 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 855.5178 Q9HDC9;H0Y512 Q9HDC9 251 257 APMAP Adipocyte plasma membrane-associated protein yes no 2 0.0026408 117.7 By MS/MS By MS/MS By matching By matching By matching 1 3 3 2 1 1.2728 1.1507 14.481 10 Median 1.2022 1.1396 NaN 1 0 Median 1.6837 1.4257 11.45 3 0 Plateau 1.1448 1.1246 15.411 3 0 Median 1.1812 1.0045 21.088 2 0 Median NaN NaN NaN 0 0 Median 1.4019 1.1618 NaN 1 0 Median 40036000 17396000 22640000 18018000 7723800 10294000 7207300 2583200 4624100 7073500 3432200 3641300 7338600 3516500 3822100 0 0 0 398700 140150 258550 36580 4039 38440 193639;193640;193641;193642;193643;193644;193645;193646;193647;193648 196830;196831;196832;196833 196830 4 VLLEAAIR KLEDSRYGRLPFSIRVLLEAAIRNCDEFLV RLPFSIRVLLEAAIRNCDEFLVKKQDIENI R V L I R N 2 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 883.5491 P21399 P21399 41 48 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.0069954 68.915 By MS/MS By MS/MS 1 1 1.2212 1.1195 15.85 2 Median 1.035 1.0008 NaN 1 0 Median 1.4409 1.2522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7216700 3363400 3853300 5139100 2551800 2587300 2077600 811610 1266000 0 0 0 0 0 0 0 0 0 0 0 0 36581 2090 38441 193649;193650 196834;196835 196834 2 VLLEAGEGLVTITPTTGSDGRPDAR NWRQAHMQARFVILRVLLEAGEGLVTITPT TITPTTGSDGRPDARVRLDRSKIRSVGKPA R V L A R V 2 2 0 2 0 0 2 4 0 1 3 0 0 0 2 1 4 0 0 2 0 0 25 1 2524.3133 G3V1D3;G3V180;Q9NY33 G3V1D3 597 621 DPP3 Dipeptidyl peptidase 3 yes no 3 1.5544E-21 95.48 By MS/MS By matching 1 1 0.82187 0.82777 9.3724 2 Median 0.75557 0.77469 NaN 1 0 Median 0.89398 0.88449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24024000 12636000 11387000 22751000 12015000 10736000 1272100 621220 650910 0 0 0 0 0 0 0 0 0 0 0 0 36582 1102 38442 193651;193652 196836;196837 196837 2 VLLEEGEAQR GPNSKLNLVVKPLEKVLLEEGEAQRLADSP KPLEKVLLEEGEAQRLADSPPPQVWQLISK K V L Q R L 1 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1142.5932 P11441;Q5HY81 P11441 77 86 UBL4A Ubiquitin-like protein 4A yes no 2 0.028205 48.283 By MS/MS 1 0.81858 0.82927 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81858 0.82927 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2068700 1174100 894570 0 0 0 0 0 0 2068700 1174100 894570 0 0 0 0 0 0 0 0 0 36583 1965 38443 193653 196838 196838 1 VLLESEQFLTELTR ______________________________ MVLLESEQFLTELTRLFQKCRTSGSVYITL M V L T R L 0 1 0 0 0 1 3 0 0 0 4 0 0 1 0 1 2 0 0 1 0 0 14 0 1676.8985 P37108;H0YLA2 P37108 2 15 SRP14 Signal recognition particle 14 kDa protein yes no 2 5.0227E-09 109.6 By MS/MS By MS/MS By matching By MS/MS 1 1 1 2 1.1017 0.93758 12.39 5 Median NaN NaN NaN 0 0 Median 1.1017 0.914 NaN 1 1 Median 1.0634 1.0781 NaN 1 0 Median 1.1498 0.94502 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0624 0.84564 14.596 2 0 Median 20634000 9846700 10788000 0 0 0 3812900 1651500 2161400 8062600 3871000 4191600 452830 203480 249340 0 0 0 8306100 4120700 4185400 36584 2266 38444 193654;193655;193656;193657;193658 196839;196840;196841;196842 196842 4 VLLGAHALLANGSVMSR LLIPAASYVLPEVSKVLLGAHALLANGSVM LGAHALLANGSVMSRVGTAQLALVARAHNV K V L S R V 3 1 1 0 0 0 0 2 1 0 4 0 1 0 0 2 0 0 0 2 0 0 17 0 1707.9454 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 398 414 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 3 5.898E-06 66.335 By MS/MS By matching 1 1 1.2892 1.2124 29.518 2 Median 1.4971 1.4938 NaN 1 0 Median 1.1101 0.98399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3218000 1387900 1830200 2749300 1135900 1613400 468750 252020 216720 0 0 0 0 0 0 0 0 0 0 0 0 36585 16 38445 193659;193660 196843 196843 1 VLLGDVSTEAAR NEGFSAVEDGVLTQRVLLGDVSTEAARTFL TQRVLLGDVSTEAARTFLHYLYTADTGLPP R V L A R T 2 1 0 1 0 0 1 1 0 0 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1229.6616 Q8IY92 Q8IY92 738 749 SLX4 Structure-specific endonuclease subunit SLX4 yes yes 2 0.00087993 88.681 By MS/MS By MS/MS 1 1 1.0126 0.99282 32.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1464 1.2508 NaN 1 1 Median 0.89431 0.78806 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12503000 5591400 6911300 0 0 0 0 0 0 11415000 5087300 6327400 1088000 504140 583900 0 0 0 0 0 0 36586 3339 38446 193661;193662 196844;196845 196844 2 VLLGETGK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK R V L G K E 0 0 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 815.47527 M0QZC5;P62280;M0R1H6 M0QZC5 23 30 RPS11 40S ribosomal protein S11 yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 3 1.1429 0.99845 17.422 10 Median 1.0567 0.99201 2.5436 2 0 Median 1.1538 0.9855 0.21652 2 0 Median 1.0829 1.066 11.871 2 0 Median NaN NaN NaN 0 0 Median 1.2277 1.4223 NaN 1 0 Median 1.41 1.1535 26.392 3 0 Plateau 29152000 13824000 15328000 11475000 5512100 5963200 6716800 3233700 3483200 5550700 2798500 2752200 0 0 0 1362700 584640 778050 4046200 1695000 2351200 36587 1422 38447 193663;193664;193665;193666;193667;193668;193669;193670;193671;193672 196846;196847;196848;196849;196850;196851;196852 196851 7 VLLGETGKEK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY QNKKRVLLGETGKEKLPRYYKNIGLGFKTP R V L E K L 0 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 1 0 0 1 0 0 10 1 1072.6128 M0QZC5;P62280;M0R1H6 M0QZC5 23 32 RPS11 40S ribosomal protein S11 yes no 2 0.063708 40.002 By matching By MS/MS By matching By matching By matching By matching 2 2 2 1 2 1 1.2061 1.2783 20.179 10 Median 1.0842 1.0935 4.4086 2 0 Median 1.1044 0.99429 3.5902 2 0 Median 1.4544 1.5486 30.828 2 0 Median 1.4597 1.3122 NaN 1 0 Median 1.2442 1.3737 3.5633 2 0 Median 1.6739 1.4119 NaN 1 0 Median 45292000 20304000 24988000 16541000 7619200 8921500 16068000 7253600 8814700 7793900 3338200 4455700 530140 192370 337770 3848100 1694600 2153400 510620 205600 305020 36588 1422 38448 193673;193674;193675;193676;193677;193678;193679;193680;193681;193682 196853 196853 1 VLLGETGKEKLPR RAYQKQPTIFQNKKRVLLGETGKEKLPRYY KRVLLGETGKEKLPRYYKNIGLGFKTPKEA R V L P R Y 0 1 0 0 0 0 2 2 0 0 3 2 0 0 1 0 1 0 0 1 0 0 13 2 1438.8508 M0QZC5;P62280;M0R1H6 M0QZC5 23 35 RPS11 40S ribosomal protein S11 yes no 3 7.1659E-06 94.122 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.0313 1.0721 10.269 7 Median 0.98512 1.0721 10.783 3 0 Median 1.0389 0.97851 12.752 2 0 Median NaN NaN NaN 0 0 Median 1.4163 1.1682 NaN 1 0 Median 0.95474 1.0999 NaN 1 0 Median NaN NaN NaN 0 0 Median 32820000 15721000 17098000 20330000 10059000 10272000 2950400 1492500 1457900 0 0 0 1156100 483000 673100 8382900 3687100 4695800 0 0 0 36589 1422 38449 193683;193684;193685;193686;193687;193688;193689 196854;196855;196856;196857;196858;196859;196860;196861;196862;196863;196864;196865 196858 12 VLLGFSSDESDVEASPR GGPGGASAAPAAGSKVLLGFSSDESDVEAS LGFSSDESDVEASPRDQAGGGGRKDRASLQ K V L P R D 1 1 0 2 0 0 2 1 0 0 2 0 0 1 1 4 0 0 0 2 0 0 17 0 1806.8636 Q9Y2U8 Q9Y2U8 135 151 LEMD3 Inner nuclear membrane protein Man1 yes yes 2 5.0054E-14 121.04 By MS/MS By matching 1 1 0.72673 0.69285 9.8302 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6074 0.64632 NaN 1 0 Median 0.86949 0.74272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8108600 4585800 3522700 0 0 0 0 0 0 7267400 4131500 3135900 841150 454340 386800 0 0 0 0 0 0 36590 4392 38450 193690;193691 196866;196867 196866 2 VLLGLSEPIFQLPR SSLVHRFLGPRNAQRVLLGLSEPIFQLPRS RVLLGLSEPIFQLPRSLASTPTAPTTPATP R V L P R S 0 1 0 0 0 1 1 1 0 1 4 0 0 1 2 1 0 0 0 1 0 0 14 0 1580.929 Q8IWA4 Q8IWA4 544 557 MFN1 Mitofusin-1 yes yes 2 0.0022058 44.309 By MS/MS By MS/MS 1 2 0.94892 0.83823 11.775 3 Median 0.94892 0.94386 NaN 1 0 Median 0.91054 0.79068 8.2603 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3639300 1899400 1740000 988920 516500 472420 2650400 1382900 1267600 0 0 0 0 0 0 0 0 0 0 0 0 36591 3323 38451 193692;193693;193694 196868;196869 196869 2 VLLGQDEPLIHVFAK SSVASDVSKPVLTTKVLLGQDEPLIHVFAK VLLGQDEPLIHVFAKNLVAFVSQEAGNRAV K V L A K N 1 0 0 1 0 1 1 1 1 1 3 1 0 1 1 0 0 0 0 2 0 0 15 0 1677.9454 Q9BT73 Q9BT73 66 80 PSMG3 Proteasome assembly chaperone 3 yes yes 3 0.0080937 25.322 By MS/MS By matching 1 1 0.88162 0.85141 9.7281 2 Median 0.85404 0.79481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9101 0.91204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3414200 1673600 1740600 1772300 947400 824900 0 0 0 1641900 726180 915720 0 0 0 0 0 0 0 0 0 36592 3822 38452 193695;193696 196870 196870 1 VLLGSVSGLAGGFVGTPADLVNVR RVAKGSQGPLPFHEKVLLGSVSGLAGGFVG AGGFVGTPADLVNVRMQNDVKLPQGQRRNY K V L V R M 2 1 1 1 0 0 0 5 0 0 4 0 0 1 1 2 1 0 0 5 0 0 24 0 2297.2743 B4DLN1;I3L1E8 B4DLN1 258 281 SLC25A10 no no 3 0.030159 12.314 By MS/MS By MS/MS 1 3 1.5653 1.3264 19.948 4 Median 0.99343 0.99473 NaN 1 0 Median 1.6191 1.3598 11.458 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5054600 2158900 2895700 1139800 581210 558640 3914800 1577700 2337100 0 0 0 0 0 0 0 0 0 0 0 0 36593 598 38453 193697;193698;193699;193700 196871;196872;196873;196874 196873 4 VLLGVGDPK LRLLLETHLPSKKKKVLLGVGDPKIGAAIQ PSKKKKVLLGVGDPKIGAAIQEELGYNCQT K V L P K I 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 896.53312 O00567;A0A494C128;Q5JXT2 O00567 91 99 NOP56 Nucleolar protein 56 yes no 2 0.0034179 65.246 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 3 1.0363 0.88458 17.022 9 Median 1.0745 1.0335 NaN 1 0 Median 1.1067 0.93161 NaN 1 0 Median 0.93667 0.91793 NaN 1 0 Median 1.4022 1.1941 NaN 1 0 Median 0.81825 0.80715 1.6456 2 0 Median 1.0822 0.88458 16.949 3 0 Plateau 158950000 82210000 76738000 3229400 1894100 1335300 7428500 3663100 3765400 64320000 32931000 31390000 3119800 1318600 1801200 59926000 32383000 27543000 20924000 10020000 10904000 36594 1472 38454 193701;193702;193703;193704;193705;193706;193707;193708;193709 196875;196876;196877;196878;196879;196880;196881;196882;196883;196884;196885 196877 11 VLLIESLATMEPDSRPELQEK LEESKQWECLTSECRVLLIESLATMEPDSR LATMEPDSRPELQEKAALLKKTLENLE___ R V L E K A 1 1 0 1 0 1 4 0 0 1 4 1 1 0 2 2 1 0 0 1 0 0 21 1 2397.2461 Q5VYK3;J3KN16 Q5VYK3 1813 1833 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 0.0082746 29.384 By MS/MS 1 0.69968 0.70447 NaN 1 Median 0.69968 0.70447 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7778200 4372800 3405400 7778200 4372800 3405400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36595 3116 38455 193710 196886 196886 1 VLLLPLER PSFRRSSLSRLGSSRVLLLPLERDSELLRE SRLGSSRVLLLPLERDSELLRERESVLRLR R V L E R D 0 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 8 0 951.6117 O95071 O95071 296 303 UBR5 E3 ubiquitin-protein ligase UBR5 yes yes 2 0.0047788 79.597 By MS/MS By matching 1 3 0.67215 0.62042 14.012 4 Median 0.70014 0.70079 NaN 1 0 Median 0.64527 0.57343 13.054 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6157500 3525700 2631700 5216300 2899200 2317100 941150 626540 314610 0 0 0 0 0 0 0 0 0 0 0 0 36596 1744 38456 193711;193712;193713;193714 196887;196888 196888 2 VLLLSHLAR KNEPPLTCPYSLKARVLLLSHLARMKIPET YSLKARVLLLSHLARMKIPETLEEDQQFML R V L A R M 1 1 0 0 0 0 0 0 1 0 4 0 0 0 0 1 0 0 0 1 0 0 9 0 1020.6444 Q9UGP8 Q9UGP8 303 311 SEC63 Translocation protein SEC63 homolog yes yes 2 0.00081314 96.492 By MS/MS By MS/MS 1 1 1.2044 1.0904 2.6865 2 Median 1.1746 1.1114 NaN 1 0 Median 1.2349 1.0699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15565000 6813500 8751100 11343000 5026100 6316400 4222100 1787400 2434800 0 0 0 0 0 0 0 0 0 0 0 0 36597 4264 38457 193715;193716 196889;196890 196889 2 VLLLSSPGLEELYR AEPITADSDPAYSSKVLLLSSPGLEELYRC KVLLLSSPGLEELYRCCMLFVDDMAEPRET K V L Y R C 0 1 0 0 0 0 2 1 0 0 5 0 0 0 1 2 0 0 1 1 0 0 14 0 1587.8872 Q8N163;E5RHJ4 Q8N163 310 323 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 1.1647E-06 97.456 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 3 2 1 0.95535 0.92033 16.992 13 Median 0.95535 0.92033 29.481 3 0 Median 0.96402 0.84254 17.823 4 0 Median 0.75272 0.80115 14.585 3 0 Median 1.1101 0.93282 9.099 2 0 Median 0.93831 0.99702 NaN 1 0 Median NaN NaN NaN 0 0 Median 50305000 26168000 24138000 13530000 6715200 6814700 18418000 9239100 9178900 16793000 9564900 7228500 756380 327210 429170 807380 321230 486150 0 0 0 36598 3354 38458 193717;193718;193719;193720;193721;193722;193723;193724;193725;193726;193727;193728;193729 196891;196892;196893;196894;196895;196896;196897;196898;196899;196900;196901;196902 196900 11 VLLLTGKPK KDFCNDKSYISEETRVLLLTGKPKPAGVLG ISEETRVLLLTGKPKPAGVLGAVNKPLSAT R V L P K P 0 0 0 0 0 0 0 1 0 0 3 2 0 0 1 0 1 0 0 1 0 0 9 1 967.643 Q29RF7 Q29RF7 1128 1136 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.031091 54.157 By matching By MS/MS 1 1 0.98836 1.0267 6.1254 2 Median NaN NaN NaN 0 0 Median 1.0527 0.98319 NaN 1 0 Median 0.9279 1.0722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12747000 6639200 6107500 0 0 0 2763300 1427700 1335500 9983400 5211400 4772000 0 0 0 0 0 0 0 0 0 36599 3003 38459 193730;193731 196903 196903 1 VLLMELEEAR RRMEIQVKDLSQQIRVLLMELEEARGNHVI SQQIRVLLMELEEARGNHVIRDEEVSSADI R V L A R G 1 1 0 0 0 0 3 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 10 0 1201.6377 P12270 P12270 502 511 TPR Nucleoprotein TPR yes yes 2 0.00033784 104.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 6 3 1 1.0089 1.0034 75.914 12 Median 1.081 1.0496 3.9842 2 0 Median 1.2756 1.0773 12.431 2 0 Median 0.91482 1.0516 11.993 4 1 Linear 1.2686 1.111 31.074 3 0 Median NaN NaN NaN 0 0 Median 0.085296 0.077107 NaN 1 0 Median 61030000 30017000 31013000 16446000 7940700 8505700 5516300 2527700 2988600 38087000 19082000 19006000 873690 373760 499930 0 0 0 106330 93037 13288 36600 1978 38460;38461 193732;193733;193734;193735;193736;193737;193738;193739;193740;193741;193742;193743;193744;193745 196904;196905;196906;196907;196908;196909;196910;196911;196912;196913;196914;196915;196916;196917;196918 196905 758 15 VLLPEYGGTK KGGEIQPVSVKVGDKVLLPEYGGTKVVLDD KVGDKVLLPEYGGTKVVLDDKDYFLFRDGD K V L T K V 0 0 0 0 0 0 1 2 0 0 2 1 0 0 1 0 1 0 1 1 0 0 10 0 1075.5914 P61604;B8ZZL8;B8ZZ54 P61604 71 80 HSPE1 10 kDa heat shock protein, mitochondrial yes no 2 0.0002262 128.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 1 1.0666 0.96231 12.409 10 Median 0.99332 0.87962 1.3324 2 0 Median 1.2479 1.0128 3.1944 2 0 Median 0.96932 0.93996 3.9198 3 2 Median 1.1938 0.92079 11.127 2 1 Median 1.2422 1.3129 NaN 1 0 Median NaN NaN NaN 0 0 Median 1186700000 552000000 634660000 406090000 200900000 205190000 606160000 268420000 337740000 135910000 65980000 69933000 33977000 14553000 19424000 4521400 2148600 2372800 0 0 0 36601 2560 38462 193746;193747;193748;193749;193750;193751;193752;193753;193754;193755 196919;196920;196921;196922;196923;196924;196925;196926;196927;196928;196929;196930;196931;196932;196933;196934;196935;196936;196937;196938;196939;196940;196941;196942;196943;196944;196945;196946 196944 28 VLLPFTR AAGPSAAAAKLNIPKVLLPFTRATRVNFTL AAKLNIPKVLLPFTRATRVNFTLEASEGCY K V L T R A 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 Q8TEM1 Q8TEM1 33 39 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0030738 122.79 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 4 3 1.1111 1.0069 35.686 15 Median 1.0481 1.0396 10.327 2 0 Median 1.1995 1.0365 4.092 2 0 Median 0.84471 0.90248 4.2313 2 0 Median 1.4476 1.2627 0.44775 2 0 Median 0.79648 0.82635 52.724 4 0 Median 1.5026 1.2764 7.2464 3 0 Median 60063000 32803000 27260000 7331300 3838000 3493300 4462000 1958600 2503400 41632000 23520000 18112000 925540 383880 541670 3879300 2444000 1435300 1833200 659190 1174000 36602 3477 38463 193756;193757;193758;193759;193760;193761;193762;193763;193764;193765;193766;193767;193768;193769;193770 196947;196948;196949;196950;196951;196952;196953;196954 196950 8 VLLPLHK FALPLKEEHKMFLIRVLLPLHKVKSLSVYH EHKMFLIRVLLPLHKVKSLSVYHPQLAYCV R V L H K V 0 0 0 0 0 0 0 0 1 0 3 1 0 0 1 0 0 0 0 1 0 0 7 0 818.53781 E9PFR3;Q14738;H0Y8C4;H0YJU0;H0YJ75;Q13362;Q96B13 E9PFR3 318 324 PPP2R5D;PPP2R5C Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform no no 2 0.025249 54.525 By MS/MS By MS/MS By matching 1 1 1 0.94966 1.0159 11.755 3 Median 0.87094 0.8328 NaN 1 0 Median 1.1995 1.0255 NaN 1 0 Median 0.94966 1.0159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10115000 5222100 4893200 5319800 2943700 2376000 3916100 1740600 2175500 879500 537820 341670 0 0 0 0 0 0 0 0 0 36603 920;1185 38464 193771;193772;193773 196955;196956 196956 2 VLLPVWEAEGLGLR EVLYKLYKDPAGPSRVLLPVWEAEGLGLRV RVLLPVWEAEGLGLRVGAAGPAPGTGSGPL R V L L R V 1 1 0 0 0 0 2 2 0 0 4 0 0 0 1 0 0 1 0 2 0 0 14 0 1550.8821 Q5T447 Q5T447 61 74 HECTD3 E3 ubiquitin-protein ligase HECTD3 yes yes 2 0.0031389 57.492 By MS/MS 1 1.1922 1.0346 NaN 1 Median NaN NaN NaN 0 0 Median 1.1922 1.0346 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2425200 1111500 1313700 0 0 0 2425200 1111500 1313700 0 0 0 0 0 0 0 0 0 0 0 0 36604 3088 38465 193774 196957 196957 1 VLLQASQDENFGNTTPR AEVTRTARKQSAQKRVLLQASQDENFGNTT LQASQDENFGNTTPRNQVIPRTPSSFRQPF R V L P R N 1 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 2 0 0 1 0 0 17 0 1888.9279 P57740;G3V1T4 P57740 32 48 NUP107 Nuclear pore complex protein Nup107 yes no 2;3 1.1234E-40 211.26 By MS/MS By MS/MS By MS/MS By matching By matching 1 3 2 1 2 1.0232 0.98823 26.349 9 Median 1.0232 0.98823 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84747 0.89242 22.023 3 0 Median 1.1434 0.97025 12.774 2 0 Median 1.1206 1.1793 NaN 1 0 Median 0.98902 0.83952 57.094 2 0 Median 136700000 71225000 65472000 6880300 3072400 3807900 0 0 0 106480000 57342000 49138000 18011000 8587200 9424000 4149400 1719700 2429700 1176000 503380 672650 36605 2518 38466 193775;193776;193777;193778;193779;193780;193781;193782;193783 196958;196959;196960;196961;196962;196963;196964;196965 196960 8 VLLQEEGTR EKAIKEKEYEIERLRVLLQEEGTRKREYEN EIERLRVLLQEEGTRKREYENELAKVRNHY R V L T R K 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1043.5611 P15924 P15924 1176 1184 DSP Desmoplakin yes yes 2 0.00040055 133.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 2 4 0.82848 0.81223 22.817 9 Median 0.91796 0.92472 18.343 2 0 Median NaN NaN NaN 0 0 Median 0.65694 0.72783 NaN 1 1 Median 0.95599 0.83246 NaN 1 0 Median 0.7016 0.78852 22.433 2 0 Median 1.2811 1.0559 36.667 3 0 Plateau 54386000 26381000 28005000 4710100 2319500 2390600 0 0 0 2436900 1401200 1035700 2388100 1154300 1233900 20805000 10523000 10282000 24046000 10982000 13063000 36606 2021 38467 193784;193785;193786;193787;193788;193789;193790;193791;193792;193793;193794 196966;196967;196968;196969;196970;196971;196972;196973;196974 196969 9 VLLQHVHEGYEK QKVQDKYRYCESRRRVLLQHVHEGYEKDLW RRRVLLQHVHEGYEKDLWEYIED_______ R V L E K D 0 0 0 0 0 1 2 1 2 0 2 1 0 0 0 0 0 0 1 2 0 0 12 0 1450.7569 Q9Y4X5;A0A087WT96 Q9Y4X5 538 549 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes no 3 0.0003592 54.343 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.1693 0.99667 49.378 6 Median 1.4491 1.3945 NaN 1 0 Median 1.0365 0.87074 49.115 3 0 Plateau 1.3757 1.4165 NaN 1 1 Median 1.3191 1.131 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15766000 9114000 6651500 3006900 1992200 1014700 9294700 5463800 3830900 2293300 1003000 1290200 1170600 654940 515710 0 0 0 0 0 0 36607 4450 38468 193795;193796;193797;193798;193799;193800 196975;196976;196977;196978 196977 4 VLLQNTSFFSSLLNEMAHK RYPVVMSTYLGVMGRVLLQNTSFFSSLLNE NTSFFSSLLNEMAHKFNQEMDQLLGNMIEM R V L H K F 1 0 2 0 0 1 1 0 1 0 4 1 1 2 0 3 1 0 0 1 0 0 19 0 2178.1143 Q9UI26;F8WDV0;H0Y8M5 Q9UI26 798 816 IPO11 Importin-11 yes no 3 0.00051346 32.181 By MS/MS By matching 2 1 1.1696 1.157 13.009 3 Median 1.1955 1.1901 3.9861 2 0 Median NaN NaN NaN 0 0 Median 0.91433 0.95508 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3856700 1767600 2089100 3308200 1488600 1819600 0 0 0 548560 279050 269510 0 0 0 0 0 0 0 0 0 36608 4288 38469 193801;193802;193803 196979;196980 196980 2 VLLQSKDQITAGNAAR GKTKEVYELLDSPGKVLLQSKDQITAGNAA LLQSKDQITAGNAARKNHLEGKAAISNKIT K V L A R K 3 1 1 1 0 2 0 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 16 1 1683.9268 P22234;E9PBS1 P22234 31 46 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 2;3 3.1568E-05 78.342 By MS/MS By MS/MS 6 2 1.0699 1.1189 12.514 8 Median 1.0644 1.0838 12.758 6 1 Median 1.3533 1.1827 1.2488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23783000 11314000 12470000 21067000 10207000 10860000 2716000 1106300 1609800 0 0 0 0 0 0 0 0 0 0 0 0 36609 909 38470 193804;193805;193806;193807;193808;193809;193810;193811 196981;196982;196983;196984;196985;196986 196983 6 VLLSALER LLSEEVELYGETKAKVLLSALERLKHRPDG YGETKAKVLLSALERLKHRPDGKYVVVTGI K V L E R L 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 8 0 899.54402 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 355 362 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.0011297 147.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 1 1.2455 1.102 10.705 9 Median 1.0381 1.0099 1.8696 2 0 Median 1.2526 1.102 4.8186 3 0 Median 1.0452 1.1097 NaN 1 0 Median 1.1301 0.95929 22.449 2 0 Median NaN NaN NaN 0 0 Median 1.4169 1.1568 NaN 1 0 Median 142340000 63958000 78378000 83423000 38482000 44941000 44515000 19350000 25164000 10738000 4499000 6238700 2767900 1246200 1521600 0 0 0 892780 380830 511950 36610 1968 38471 193812;193813;193814;193815;193816;193817;193818;193819;193820;193821 196987;196988;196989;196990;196991;196992;196993;196994;196995;196996 196988 10 VLLSLEHGLWAPNLHFHSPNPEIPALLDGR MGHPEPASGLAALAKVLLSLEHGLWAPNLH FHSPNPEIPALLDGRLQVVDQPLPVRGGNV K V L G R L 2 1 2 1 0 0 2 2 3 1 7 0 0 1 4 2 0 1 0 1 0 0 30 0 3341.7673 P49327;A0A0U1RQF0 P49327 344 373 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 4;5 1.5189E-37 95.823 By MS/MS 8 0.73218 0.62177 14.602 8 Median NaN NaN NaN 0 0 Median 0.73218 0.62177 14.602 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149480000 80630000 68848000 0 0 0 149480000 80630000 68848000 0 0 0 0 0 0 0 0 0 0 0 0 36611 2377 38472 193822;193823;193824;193825;193826;193827;193828;193829 196997;196998;196999;197000;197001;197002;197003 197001 7 VLLSPDYLPAMR LQSFVQCQPFERLFKVLLSPDYLPAMRRRR LFKVLLSPDYLPAMRRRRSSDPLGDTASNL K V L M R R 1 1 0 1 0 0 0 0 0 0 3 0 1 0 2 1 0 0 1 1 0 0 12 0 1373.7377 Q7Z6Z7 Q7Z6Z7 633 644 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 4.6895E-06 102.61 By MS/MS By matching By matching 1 1 1 1.1046 0.93129 6.9494 3 Median NaN NaN NaN 0 0 Median 1.1046 0.93129 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1626 1.008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85427 0.87759 NaN 1 0 Median 5032000 2404900 2627100 0 0 0 4791500 2294500 2497000 0 0 0 109660 52852 56806 0 0 0 130880 57615 73267 36612 3253 38473 193830;193831;193832 197004;197005 197005 2 VLLTMIAR ______________________________ ______________________________ M V L A R V 1 1 0 0 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 1 0 0 8 0 915.55756 O75396 O75396 2 9 SEC22B Vesicle-trafficking protein SEC22b yes yes 2 0.0048619 79.116 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 1 1.5702 1.2942 14.229 6 Median 1.1662 1.1094 NaN 1 0 Median 1.7515 1.4828 18.137 2 0 Median 1.2884 1.2379 NaN 1 0 Median 1.7336 1.4315 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5984 1.2842 NaN 1 0 Median 83321000 36335000 46986000 56510000 25594000 30916000 6317700 2505500 3812200 10486000 4555900 5930200 999770 395410 604360 0 0 0 9007800 3283900 5724000 36613 1669 38474 193833;193834;193835;193836;193837;193838 197006;197007;197008;197009;197010 197006 5 VLLTTQGVDMISK TQTPSWLGLPNNAERVLLTTQGVDMISKML ERVLLTTQGVDMISKMLKMQMLEDEDDLAY R V L S K M 0 0 0 1 0 1 0 1 0 1 2 1 1 0 0 1 2 0 0 2 0 0 13 0 1403.7694 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4330 4342 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 6.6201E-07 138.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 4 4 3 1 1.1772 1.1557 23.524 18 Median 1.1322 1.1067 11.237 4 0 Median 1.1429 1.0179 10.749 2 0 Median 1.1308 1.2266 30.044 4 1 Median 1.1827 1.1718 18.8 4 0 Median 1.6478 1.7273 19.81 3 1 Median 1.2763 1.0952 NaN 1 0 Median 531890000 248950000 282940000 223890000 105760000 118130000 69701000 30533000 39169000 210700000 100610000 110090000 18810000 8552100 10258000 7846600 3069300 4777200 942410 429840 512570 36614 2865 38475;38476 193839;193840;193841;193842;193843;193844;193845;193846;193847;193848;193849;193850;193851;193852;193853;193854;193855;193856 197011;197012;197013;197014;197015;197016;197017;197018;197019;197020;197021;197022;197023;197024;197025;197026;197027;197028;197029;197030 197021 1564 20 VLLVLELQGLQK GPDSLTVHLIHEVTKVLLVLELQGLQKNMT VTKVLLVLELQGLQKNMTRFRIDELEPRRP K V L Q K N 0 0 0 0 0 2 1 1 0 0 5 1 0 0 0 0 0 0 0 2 0 0 12 0 1351.8439 Q14697 Q14697 85 96 GANAB Neutral alpha-glucosidase AB yes yes 2 4.4889E-06 147.51 By MS/MS By MS/MS 2 4 1.2166 1.0953 7.875 6 Median 1.1273 1.1201 8.2061 2 0 Median 1.2571 1.0953 8.2671 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26210000 11613000 14597000 3490200 1715100 1775100 22720000 9897400 12822000 0 0 0 0 0 0 0 0 0 0 0 0 36615 2896 38477 193857;193858;193859;193860;193861;193862 197031;197032;197033;197034;197035 197033 5 VLLVPGPEK ADAMKQMQEKKNVGKVLLVPGPEKEN____ KKNVGKVLLVPGPEKEN_____________ K V L E K E 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 0 0 0 2 0 0 9 0 950.58007 Q99536;K7EJM4 Q99536 383 391 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.0073226 51.854 By MS/MS By MS/MS 1 1 0.94416 0.8456 8.8421 2 Median 0.95606 0.90015 NaN 1 0 Median 0.9324 0.79435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22443000 10655000 11788000 2636600 1272100 1364500 19807000 9383400 10423000 0 0 0 0 0 0 0 0 0 0 0 0 36616 3750 38478 193863;193864 197036;197037;197038 197036 3 VLLVPGPEKEN ADAMKQMQEKKNVGKVLLVPGPEKEN____ NVGKVLLVPGPEKEN_______________ K V L E N - 0 0 1 0 0 0 2 1 0 0 2 1 0 0 2 0 0 0 0 2 0 0 11 1 1193.6656 Q99536;K7EJM4 Q99536 383 393 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 0.013603 51.066 By MS/MS By matching By matching By matching 2 2 1 1 0.8553 0.80994 20.511 6 Median 0.72782 0.67023 18.539 2 0 Median 0.91141 0.78814 12.097 2 0 Median 0.87986 0.94309 NaN 1 0 Median 1.168 1.0454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85854000 47196000 38658000 68592000 38452000 30141000 9215400 4437500 4777900 3787200 2272500 1514700 4259400 2034400 2225000 0 0 0 0 0 0 36617 3750 38479 193865;193866;193867;193868;193869;193870 197039;197040 197039 2 VLLYLLSPR ISSLPSIVNDKYGRKVLLYLLSPRDPAHTV DKYGRKVLLYLLSPRDPAHTVREIIEVLQK K V L P R D 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 1 0 0 9 0 1072.6645 Q15397 Q15397 441 449 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.037899 34.253 By matching By MS/MS By matching 1 4 2 1.0505 0.98276 6.4297 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95192 0.98276 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0434 1.0376 7.1618 4 0 Median 1.1441 0.95496 0.034423 2 0 Median 12691000 6370800 6320100 0 0 0 0 0 0 335390 104570 230830 0 0 0 10062000 5159500 4902500 2293500 1106800 1186700 36618 2947 38480 193871;193872;193873;193874;193875;193876;193877 197041 197041 1 VLMATNR LINQLDGFDPRGNIKVLMATNRPDTLDPAL FDPRGNIKVLMATNRPDTLDPALMRPGRLD K V L N R P 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 7 0 803.43236 P35998 P35998 317 323 PSMC2 26S protease regulatory subunit 7 yes yes 2 0.037371 46.37 By MS/MS By matching 2 1 1.1104 0.9326 5.3901 3 Plateau NaN NaN NaN 0 0 Median 1.0711 0.91419 7.4467 2 0 Median 0.96043 0.9326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13392000 6197000 7195500 0 0 0 12827000 5953700 6873200 565520 243260 322270 0 0 0 0 0 0 0 0 0 36619 2253 38481 193878;193879;193880 197042 197042 1 VLMATNRPDTLDPALMRPGR LINQLDGFDPRGNIKVLMATNRPDTLDPAL NRPDTLDPALMRPGRLDRKIEFSLPDLEGR K V L G R L 2 3 1 2 0 0 0 1 0 0 3 0 2 0 3 0 2 0 0 1 0 0 20 2 2223.1616 P35998 P35998 317 336 PSMC2 26S protease regulatory subunit 7 yes yes 3 0.00050262 30.416 By MS/MS 1 0.75849 0.95667 NaN 1 Median 0.75849 0.95667 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13107000 7415200 5692200 13107000 7415200 5692200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36620 2253 38482 193881 197043;197044 197044 2 VLMEFVENSR KYNDGSPGREFYMDKVLMEFVENSRKAMKE FYMDKVLMEFVENSRKAMKEAGKGGVADSR K V L S R K 0 1 1 0 0 0 2 0 0 0 1 0 1 1 0 1 0 0 0 2 0 0 10 0 1222.6016 Q8WWI5 Q8WWI5 621 630 SLC44A1 Choline transporter-like protein 1 yes yes 2 0.00041856 75.378 By MS/MS By MS/MS 1 1 1.0869 0.99393 14.939 2 Median 0.90722 0.89429 NaN 1 0 Median 1.3022 1.1047 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10825000 5356100 5468700 8445200 4361000 4084200 2379600 995110 1384500 0 0 0 0 0 0 0 0 0 0 0 0 36621 3509 38483 193882;193883 197045;197046;197047 197045 3 VLMQELVTLIEQR KPEKDWTEEDRAREKVLMQELVTLIEQRNA EKVLMQELVTLIEQRNAIINCLDEDRQREE K V L Q R N 0 1 0 0 0 2 2 0 0 1 3 0 1 0 0 0 1 0 0 2 0 0 13 0 1570.8753 Q8N3F8;B0QY91 Q8N3F8 783 795 MICALL1 MICAL-like protein 1 yes no 2 0.0083315 37.112 By MS/MS By matching By matching By matching 1 1 2 1 1.0844 1.0951 7.0271 5 Median 1.0844 1.0951 NaN 1 0 Median 1.0892 0.97275 NaN 1 0 Median 1.0084 1.0524 6.9374 2 0 Median 1.2894 1.1485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1161600 540540 621020 554720 257780 296940 69795 30438 39357 432750 210000 222740 104300 42322 61977 0 0 0 0 0 0 36622 3367 38484 193884;193885;193886;193887;193888 197048 197048 1 VLMTQQPR DKYSRHRITIKKRFKVLMTQQPRPVL____ TIKKRFKVLMTQQPRPVL____________ K V L P R P 0 1 0 0 0 2 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 8 0 971.52224 Q9NPE3 Q9NPE3 54 61 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 0.005111 77.674 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 2 2 0.85654 0.82722 5.0989 9 Median 0.85549 0.82609 NaN 1 0 Median 0.92713 0.74989 NaN 1 0 Median 0.82043 0.82584 0.23554 2 0 Median 1.0886 0.85876 NaN 1 0 Median 0.82862 0.86501 1.3439 2 0 Median 1.1009 0.85408 6.6296 2 0 Median 13358000 7037300 6320800 398920 193950 204980 130350 66352 64003 6376000 3570400 2805600 1068000 493000 574960 2718100 1457400 1260700 2666800 1256200 1410600 36623 4048 38485 193889;193890;193891;193892;193893;193894;193895;193896;193897 197049;197050;197051;197052;197053;197054 197050 6 VLMTQQPRPVL DKYSRHRITIKKRFKVLMTQQPRPVL____ KRFKVLMTQQPRPVL_______________ K V L V L - 0 1 0 0 0 2 0 0 0 0 2 0 1 0 2 0 1 0 0 2 0 0 11 1 1280.7275 Q9NPE3 Q9NPE3 54 64 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 2.8279E-05 146.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 3 4 0.7183 0.71807 16.134 13 Median 0.69592 0.67644 NaN 1 1 Median 0.89334 0.74106 23.629 2 1 Median 0.71809 0.71786 10.088 4 1 Median 0.9789 0.76835 30.004 3 1 Median 0.70175 0.72431 8.0946 3 1 Median NaN NaN NaN 0 0 Median 262150000 147660000 114490000 11068000 5920500 5147400 16319000 7938100 8380600 111980000 64859000 47120000 17523000 8412100 9110700 105260000 60531000 44733000 0 0 0 36624 4048 38486;38487 193898;193899;193900;193901;193902;193903;193904;193905;193906;193907;193908;193909;193910;193911 197055;197056;197057;197058;197059;197060;197061;197062;197063;197064;197065;197066;197067;197068;197069;197070;197071 197055 1867 16 VLNEAVGALMYHTITLTR VAFCDAQSTQEIHEKVLNEAVGALMYHTIT EAVGALMYHTITLTREDLEKFKALRIIVRI K V L T R E 2 1 1 0 0 0 1 1 1 1 3 0 1 0 0 0 3 0 1 2 0 0 18 0 2001.0717 Q13363;D6RAX2;E7ESU7;E7EPF8;E9PGB1 Q13363 66 83 CTBP1 C-terminal-binding protein 1 yes no 2;3 1.9245E-08 92.633 By matching By MS/MS By MS/MS By matching By matching 1 4 3 2 1 1.2819 1.1207 18.534 11 Median 1.2525 1.2226 NaN 1 0 Median 1.3773 1.1823 12.412 4 0 Median 0.9953 0.9679 3.9919 3 0 Median 1.4364 1.2542 15.91 2 0 Median NaN NaN NaN 0 0 Median 0.94122 0.76277 NaN 1 0 Median 71720000 34676000 37044000 554530 271480 283050 9428900 3844200 5584700 59651000 29697000 29954000 1365700 540640 825030 0 0 0 719710 322560 397150 36625 2808 38488;38489 193912;193913;193914;193915;193916;193917;193918;193919;193920;193921;193922 197072;197073;197074;197075;197076;197077;197078;197079 197074 1507 8 VLNEAVGAMMYHTITLTR VAFCDAQSTQEIHEKVLNEAVGAMMYHTIT EAVGAMMYHTITLTREDLEKFKALRVIVRI K V L T R E 2 1 1 0 0 0 1 1 1 1 2 0 2 0 0 0 3 0 1 2 0 0 18 0 2019.0282 P56545 P56545 72 89 CTBP2 C-terminal-binding protein 2 yes yes 3 1.4894E-06 71.594 By matching By MS/MS By MS/MS 1 3 3 1.2972 1.1239 18.665 7 Median NaN NaN NaN 0 0 Median 1.7028 1.4843 NaN 1 0 Median 0.99678 0.9702 9.4388 3 0 Median 1.3573 1.1811 5.9476 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82644000 40300000 42345000 0 0 0 1089700 389270 700400 72875000 36218000 36658000 8679200 3692800 4986500 0 0 0 0 0 0 36626 2514 38490;38491;38492 193923;193924;193925;193926;193927;193928;193929 197080;197081;197082;197083;197084;197085;197086;197087 197084 1193;1194 8 VLNELTQLK KAEDALSEMKSQYSKVLNELTQLKQLVDAQ KSQYSKVLNELTQLKQLVDAQKENSVSITE K V L L K Q 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1056.6179 Q9P0K7 Q9P0K7 709 717 RAI14 Ankycorbin yes yes 2 0.00067245 105.57 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 1 1.3318 1.2491 22.692 8 Median 1.4141 1.402 NaN 1 0 Median 1.268 1.0808 NaN 1 0 Median 0.7811 0.84212 25.577 2 1 Median 1.4863 1.2657 7.8691 2 0 Median 1.2767 1.3136 NaN 1 0 Median 1.5783 1.3034 NaN 1 0 Median 26015000 12861000 13155000 2610900 1032100 1578900 1114900 499790 615090 10905000 6135600 4769300 4588300 1864800 2723600 6387600 3197400 3190200 408460 130920 277530 36627 4204 38493 193930;193931;193932;193933;193934;193935;193936;193937 197088;197089;197090;197091;197092;197093 197088 6 VLNGYSLQHK DEAHRLKNNQSKFFRVLNGYSLQHKLLLTG SKFFRVLNGYSLQHKLLLTGTPLQNNLEEL R V L H K L 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1157.6193 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839 888 897 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.00073339 99.442 By MS/MS 1 1.336 1.1444 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.336 1.1444 NaN 1 0 Median 5862000 2242700 3619300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5862000 2242700 3619300 36628 246 38494 193938 197094;197095 197095 2 VLNHFSIMQQR LTAEEAEEEWERRNKVLNHFSIMQQRRLKD RRNKVLNHFSIMQQRRLKDQDQDEDEEEKE K V L Q R R 0 1 1 0 0 2 0 0 1 1 1 0 1 1 0 1 0 0 0 1 0 0 11 0 1371.7081 P35269;M0QXD6;M0R0R9 P35269 170 180 GTF2F1 General transcription factor IIF subunit 1 yes no 2;3 8.237E-05 72.434 By MS/MS By matching By MS/MS By matching 1 1 2 1 1.237 1.0345 112.02 5 Median 0.34659 0.32751 NaN 1 0 Median 3.7636 3.2197 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1204 0.95288 11.628 2 0 Median NaN NaN NaN 0 0 Median 6.96 5.5682 NaN 1 0 Median 26634000 15153000 11481000 21182000 13178000 8004400 1165700 233150 932530 0 0 0 3916200 1704100 2212100 0 0 0 370160 38027 332140 36629 2240 38495 193939;193940;193941;193942;193943 197096;197097;197098 197098 3 VLNILEK AMGIMDKLSTDKTVKVLNILEKNIQDGSKL LSTDKTVKVLNILEKNIQDGSKLSTLLNHN K V L E K N 0 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 827.51165 A0A590UJS4;Q6KC79 A0A590UJS4 1265 1271 NIPBL Nipped-B-like protein yes no 2 0.023573 56.547 By matching By matching By MS/MS By MS/MS 1 1 1 2 0.98534 0.92056 13.646 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.036 1.1547 NaN 1 0 Median 0.89045 0.81715 NaN 1 0 Median 0.92461 0.96761 NaN 1 0 Median 1.0288 0.8817 6.0998 2 0 Median 13965000 7314500 6650600 0 0 0 0 0 0 3189500 1548400 1641100 368920 195510 173420 8588300 4729600 3858700 1818300 840920 977420 36630 488 38496 193944;193945;193946;193947;193948 197099;197100;197101 197099 3 VLNLGQALER NILIVLTKILPWYPKVLNLGQALERRVHKI PWYPKVLNLGQALERRVHKICQEEKEKRPD K V L E R R 1 1 1 0 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1111.635 Q8NI27;A0A0C4DG98;H0Y815 Q8NI27 1137 1146 THOC2 THO complex subunit 2 yes no 2 5.4366E-06 155.07 By MS/MS By MS/MS By matching 1 2 1 1.0177 0.99724 21.58 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91872 1.0015 NaN 1 0 Median 1.21 1.048 7.6329 2 0 Median NaN NaN NaN 0 0 Median 0.83227 0.67804 NaN 1 0 Median 73663000 38015000 35648000 0 0 0 0 0 0 64876000 33875000 31002000 7812200 3598500 4213700 0 0 0 975130 542240 432880 36631 3448 38497 193949;193950;193951;193952 197102;197103;197104;197105;197106 197102 5 VLNLPPNTIMEYK SDQATTARIRDTLRRVLNLPPNTIMEYKTH RRVLNLPPNTIMEYKTHTDSIKMPGRLGPQ R V L Y K T 0 0 2 0 0 0 1 0 0 1 2 1 1 0 2 0 1 0 1 1 0 0 13 0 1530.8116 O60573;C9JEL3;B9A044;B8ZZ50;B8ZZL3;B4E1E4;B9A023 O60573 203 215 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes no 2 0.0010257 60.563 By MS/MS By matching By matching 1 1 1 0.94328 0.79701 13.91 3 Median 0.73964 0.6941 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98128 0.91673 NaN 1 0 Median 0.94328 0.79701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7730400 4317700 3412700 6836300 3904400 2931900 0 0 0 698510 314660 383850 195530 98579 96946 0 0 0 0 0 0 36632 1622 38498 193953;193954;193955 197107;197108;197109 197108 3 VLNLWQK NLYRCPGDDKSKIVRVLNLWQKNNVFKSEI DDKSKIVRVLNLWQKNNVFKSEIIQPLLDM R V L Q K N 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 7 0 899.52289 A0A0A0MT33;Q9UPN6;O95104 A0A0A0MT33 191 197 SCAF8;SCAF4 Protein SCAF8;Splicing factor, arginine/serine-rich 15 no no 2 0.014298 74.717 By MS/MS By matching By matching 2 3 1 0.85482 0.72297 25.528 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0661 1.1078 7.6042 2 0 Median 0.79452 0.66502 9.674 3 0 Median NaN NaN NaN 0 0 Median 0.76069 0.65524 NaN 1 0 Median 10854000 5503300 5350800 0 0 0 0 0 0 9383300 4696500 4686800 969890 531640 438260 0 0 0 500900 275160 225740 36633 186;1745 38499 193956;193957;193958;193959;193960;193961 197110 197110 1 VLNMKPPEILSMIEEAAGTR VNNPHFLIMQGRITKVLNMKPPEILSMIEE PPEILSMIEEAAGTRMYEYKKIAAQKTIEK K V L T R M 2 1 1 0 0 0 3 1 0 2 2 1 2 0 2 1 1 0 0 1 0 0 20 1 2198.1439 O95347;Q5T821 O95347 153 172 SMC2 Structural maintenance of chromosomes protein 2 yes no 3 8.3411E-08 60.034 By MS/MS By MS/MS 1 1 0.72535 0.78733 3.5654 2 Median 0.74084 0.76773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71017 0.80743 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485000 2617700 1867200 1871700 1059800 811870 0 0 0 2613300 1557900 1055400 0 0 0 0 0 0 0 0 0 36634 1766 38500 193962;193963 197111;197112;197113;197114 197114 4 VLNMMPEEK AFVSTAKCQLLFALKVLNMMPEEKLVEALA LLFALKVLNMMPEEKLVEALAAATEKQKKA K V L E K L 0 0 1 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 0 1 0 0 9 0 1089.5199 Q9BRJ7;K7EIN2 Q9BRJ7 179 187 NUDT16L1 Protein syndesmos yes no 2 0.061721 27.882 By MS/MS By matching 1 1 0.91662 0.80797 0.091983 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85834 0.8085 NaN 1 0 Median 0.97887 0.80745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6623800 3625100 2998600 0 0 0 0 0 0 5928800 3317000 2611800 694970 308160 386810 0 0 0 0 0 0 36635 3796 38501 193964;193965 197115 197115 1 VLNNFISNQK KAHTEKVHVPARPYRVLNNFISNQKMDFKE ARPYRVLNNFISNQKMDFKEDLSGIAEMFK R V L Q K M 0 0 3 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1175.6299 P46013 P46013 736 745 MKI67 Antigen KI-67 yes yes 2 0.00044217 121.09 By MS/MS By MS/MS 1 2 1.0504 1.1189 16.941 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0504 1.1189 NaN 1 0 Median 1.0929 0.97562 21.186 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38243000 18047000 20196000 0 0 0 0 0 0 36341000 17149000 19192000 1902000 897430 1004600 0 0 0 0 0 0 36636 2335 38502 193966;193967;193968 197116;197117;197118 197117 3 VLNNMEIGTSLFDEEGAK NEMIIGGGMAFTFLKVLNNMEIGTSLFDEE NMEIGTSLFDEEGAKIVKDLMSKAEKNGVK K V L A K I 1 0 2 1 0 0 3 2 0 1 2 1 1 1 0 1 1 0 0 1 0 0 18 0 1965.9354 P00558 P00558 247 264 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 1.2718E-24 132.59 By MS/MS By MS/MS By MS/MS By MS/MS 7 5 4 2 1.0755 1.027 34.873 18 Median 0.98255 0.91925 21.237 7 1 Median 1.2657 1.0915 15.49 5 0 Median 0.70875 0.70441 60.741 4 2 Median 1.1556 1.0006 21.362 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246350000 141240000 105110000 81239000 41596000 39643000 33317000 13939000 19378000 128800000 84268000 44531000 2997100 1442000 1555100 0 0 0 0 0 0 36637 1824 38503;38504 193969;193970;193971;193972;193973;193974;193975;193976;193977;193978;193979;193980;193981;193982;193983;193984;193985;193986 197119;197120;197121;197122;197123;197124;197125;197126;197127;197128;197129;197130;197131;197132;197133;197134;197135 197132 594 17 VLNSLTQQEK LLTVIDSTEAHCQAKVLNSLTQQEKKETAR HCQAKVLNSLTQQEKKETARPSCEIVDGTR K V L E K K 0 0 1 0 0 2 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1158.6245 Q92538 Q92538 596 605 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 yes yes 2 0.00070231 109.71 By MS/MS 2 1.2942 1.1259 1.4444 2 Median NaN NaN NaN 0 0 Median 1.2942 1.1259 1.4444 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2942600 1325000 1617700 0 0 0 2942600 1325000 1617700 0 0 0 0 0 0 0 0 0 0 0 0 36638 3533 38505 193987;193988 197136;197137 197136 2 VLNSNPPPIIK VQPPFAEGSDECLPKVLNSNPPPIIKYLAL CLPKVLNSNPPPIIKYLALQDLMLLSQYSP K V L I K Y 0 0 2 0 0 0 0 0 0 2 1 1 0 0 3 1 0 0 0 1 0 0 11 0 1190.7023 Q9BTX1 Q9BTX1 318 328 NDC1 Nucleoporin NDC1 yes yes 2 0.00016115 90.657 By matching By matching By MS/MS By MS/MS By matching 1 1 3 3 1 0.827 0.72384 17.063 9 Median 0.62408 0.61958 NaN 1 0 Median 0.827 0.72384 NaN 1 0 Median 0.77982 0.86911 14.653 3 0 Median 0.86634 0.84569 20.978 3 0 Median NaN NaN NaN 0 0 Median 0.83453 0.72228 NaN 1 0 Median 67023000 37296000 29728000 3666500 2125700 1540800 6295500 3229300 3066200 48085000 27456000 20629000 8730400 4353500 4376900 0 0 0 246000 131270 114730 36639 3831 38506 193989;193990;193991;193992;193993;193994;193995;193996;193997 197138;197139;197140;197141;197142 197139 5 VLNSYWVGEDSTYK SVAEERAGRHCGALRVLNSYWVGEDSTYKF RVLNSYWVGEDSTYKFFEVILIDPFHKAIR R V L Y K F 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 2 2 0 0 14 0 1659.7781 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738 P61313 115 128 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 7.331E-08 100.93 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1.0749 0.97813 12.659 7 Median 0.93856 0.87495 15.764 2 0 Median 1.0749 0.93192 NaN 1 0 Median 1.1098 1.0412 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0527 1.0424 15.332 2 0 Median 1.2986 1.0733 NaN 1 0 Median 376450000 174110000 202350000 239860000 110720000 129140000 1512300 696930 815330 54241000 24595000 29646000 0 0 0 74092000 35173000 38919000 6745800 2919400 3826400 36640 2555 38507 193998;193999;194000;194001;194002;194003;194004 197143;197144;197145;197146;197147;197148;197149;197150;197151;197152;197153 197147 11 VLNTNIDGR ______________________________ FQHILRVLNTNIDGRRKIAFAITAIKGVGR R V L G R R 0 1 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 P62269;A0A0G2JQH2;Q5GGW2 P62269 15 23 RPS18 40S ribosomal protein S18 yes no 2 1.8596E-10 170.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 2 2 1.2926 1.0931 12.864 10 Median 1.1133 1.0484 NaN 1 0 Median 1.2338 1.0261 5.228 3 0 Median 1.0485 1.0062 NaN 1 0 Median 1.3701 1.1341 NaN 1 0 Median 1.2819 1.3294 21.927 2 0 Median 1.4437 1.1277 4.6913 2 0 Median 138370000 63330000 75035000 69219000 31920000 37299000 52576000 23952000 28625000 6361700 3072900 3288800 2026200 770870 1255300 3280400 1464200 1816200 4901400 2150600 2750800 36641 2578 38508 194005;194006;194007;194008;194009;194010;194011;194012;194013;194014 197154;197155;197156;197157;197158;197159;197160;197161;197162;197163;197164;197165;197166;197167;197168 197162 15 VLNTNIDGRR ______________________________ QHILRVLNTNIDGRRKIAFAITAIKGVGRR R V L R R K 0 2 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 1 1156.6313 P62269;A0A0G2JQH2;Q5GGW2 P62269 15 24 RPS18 40S ribosomal protein S18 yes no 2 0.014956 43.808 By matching By MS/MS By matching 1 1 2 1.1917 1.1696 7.1884 4 Median 1.1504 1.2059 NaN 1 0 Median 1.2345 1.1294 NaN 1 0 Median 1.1522 1.2226 10.577 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34316000 15675000 18642000 17330000 8074500 9255300 13788000 6070900 7717000 3198800 1529400 1669400 0 0 0 0 0 0 0 0 0 36642 2578 38509 194015;194016;194017;194018 197169 197169 1 VLNVTNLEFSDTR LKEFVDYYYSTNRKRVLNVTNLEFSDTRMS KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS R V L T R M 0 1 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 13 0 1506.7678 O75151 O75151 189 201 PHF2 Lysine-specific demethylase PHF2 yes yes 2 5.7922E-10 172.69 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.0151 0.95013 17.912 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81429 0.88387 29.349 2 1 Median 1.1086 0.95013 NaN 1 0 Median 0.76205 0.7839 NaN 1 0 Median 1.266 1.0353 NaN 1 0 Median 24189000 13760000 10429000 0 0 0 0 0 0 12830000 7556000 5273800 642820 282570 360250 9884900 5518700 4366200 830890 402570 428330 36643 1649 38510 194019;194020;194021;194022;194023 197170;197171;197172;197173 197172 4 VLNYAPGPLDTDMQQLAR DMLFQVLALEEPNVRVLNYAPGPLDTDMQQ YAPGPLDTDMQQLARETSVDPDMRKGLQEL R V L A R E 2 1 1 2 0 2 0 1 0 0 3 0 1 0 2 0 1 0 1 1 0 0 18 0 2000.999 P35270 P35270 193 210 SPR Sepiapterin reductase yes yes 2 1.0062E-05 54.7 By MS/MS By matching By matching 1 1 1 0.74945 0.70921 11.306 3 Median 0.74945 0.70921 NaN 1 0 Median 0.99949 0.85262 NaN 1 0 Median 0.74309 0.69409 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8416800 4445600 3971200 7450100 3936100 3514000 288860 131770 157090 677870 377730 300140 0 0 0 0 0 0 0 0 0 36644 2241 38511 194024;194025;194026 197174;197175 197175 2 VLPANSMAESR ______________________________ PSDRVLPANSMAESREGDFGCTVMELRKLM R V L S R E 2 1 1 0 0 0 1 0 0 0 1 0 1 0 1 2 0 0 0 1 0 0 11 0 1173.5812 P23634 P23634 8 18 ATP2B4 Plasma membrane calcium-transporting ATPase 4 yes yes 2 0.027463 52.49 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36645 2119 38512 194027 197176 197176 1 VLPFFERPDFQLFTGNK NLYFLYLIELRALSKVLPFFERPDFQLFTG PFFERPDFQLFTGNKIQDEENKMLLLEILH K V L N K I 0 1 1 1 0 1 1 1 0 0 2 1 0 4 2 0 1 0 0 1 0 0 17 1 2054.0625 Q96HE7 Q96HE7 318 334 ERO1L ERO1-like protein alpha yes yes 3 0.026163 16.88 By MS/MS By matching 3 1 0.80485 0.83381 10.942 4 Median 0.80425 0.81008 3.6273 3 0 Median NaN NaN NaN 0 0 Median 0.9161 1.0164 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10549000 5616000 4933000 9393300 5014900 4378500 0 0 0 1155700 601180 554490 0 0 0 0 0 0 0 0 0 36646 3666 38513 194028;194029;194030;194031 197177;197178 197178 2 VLPGDYEILATHPTWALK QSTVTQPGGKFAFFKVLPGDYEILATHPTW GDYEILATHPTWALKEASTTVRVTNSNANA K V L L K E 2 0 0 1 0 0 1 1 1 1 3 1 0 0 2 0 2 1 1 1 0 0 18 0 2023.0779 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;J3KN36;P69849;Q5JPE7 J3KN36 176 193 NOMO1;NOMO3;NOMO2 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 3 0.0081841 23.329 By MS/MS By matching 2 1 0.83828 0.73348 14.499 3 Median 0.81537 0.79267 19.502 2 0 Median 0.83828 0.73348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6601500 3500300 3101100 4082400 2275900 1806500 2519100 1224500 1294600 0 0 0 0 0 0 0 0 0 0 0 0 36647 117;1301 38514 194032;194033;194034 197179;197180 197179 2 VLPGHFNTFGAER CERLIELVDRGLVEKVLPGHFNTFGAERLF EKVLPGHFNTFGAERLFRLASNYISKAGIC K V L E R L 1 1 1 0 0 0 1 2 1 0 1 0 0 2 1 0 1 0 0 1 0 0 13 0 1443.7259 Q68D91 Q68D91 227 239 MBLAC2 Metallo-beta-lactamase domain-containing protein 2 yes yes 3 0.0003957 53.448 By MS/MS 2 0.60133 0.60821 11.297 2 Median 0.60133 0.60821 11.297 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13381000 7483900 5896900 13381000 7483900 5896900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36648 3125 38515 194035;194036 197181 197181 1 VLPGMHHPIQMK RKAALEAQNALHNMKVLPGMHHPIQMKPAD NMKVLPGMHHPIQMKPADSEKNNAVEDRKL K V L M K P 0 0 0 0 0 1 0 1 2 1 1 1 2 0 2 0 0 0 0 1 0 0 12 0 1386.7264 G5EA30;Q92879;E9PSH0 G5EA30 111 122 CELF1 CUGBP Elav-like family member 1 yes no 3 0.00098244 45.653 By MS/MS By MS/MS 1 1 0.82917 0.76234 16.132 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69001 0.68016 NaN 1 1 Median 0.9964 0.85445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12950000 6533300 6416700 0 0 0 0 0 0 5056700 2696200 2360400 7893300 3837100 4056200 0 0 0 0 0 0 36649 1133 38516 194037;194038 197182;197183 197183 2 VLPGMHHPIQMKPADSEK RKAALEAQNALHNMKVLPGMHHPIQMKPAD GMHHPIQMKPADSEKNNAVEDRKLFIGMIS K V L E K N 1 0 0 1 0 1 1 1 2 1 1 2 2 0 3 1 0 0 0 1 0 0 18 1 2014.0128 G5EA30;Q92879 G5EA30 111 128 CELF1 CUGBP Elav-like family member 1 yes no 3;4;5 1.6041E-06 70.783 By MS/MS By MS/MS 6 3 0.66815 0.6979 16.829 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64035 0.66961 17.822 6 0 Median 0.74355 0.74323 13.748 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62493000 36667000 25826000 0 0 0 0 0 0 46288000 27598000 18690000 16205000 9068800 7135800 0 0 0 0 0 0 36650 1133 38517 194039;194040;194041;194042;194043;194044;194045;194046;194047 197184;197185;197186;197187;197188;197189;197190;197191;197192;197193;197194;197195;197196;197197;197198 197192 15 VLPIMFPALYR NNEYIMSLISDNAARVLPIMFPALYRNSKS NAARVLPIMFPALYRNSKSHWNKTIHGLIY R V L Y R N 1 1 0 0 0 0 0 0 0 1 2 0 1 1 2 0 0 0 1 1 0 0 11 0 1318.7472 E9PFR3;Q14738;H0Y8C4;H7C5Q9 E9PFR3 434 444 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform yes no 2 0.0086798 40.045 By MS/MS By MS/MS By MS/MS 3 1 1 0.83921 0.84241 5.948 5 Median 0.83913 0.84241 3.0867 3 0 Median 0.95526 0.8261 NaN 1 0 Median 0.88212 0.9432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8129400 4191600 3937800 3617600 1990600 1627000 1920600 967590 952990 2591200 1233400 1357800 0 0 0 0 0 0 0 0 0 36651 920 38518 194048;194049;194050;194051;194052 197199;197200;197201;197202;197203;197204 197202 6 VLPIQDNVSK KRPETKPSSDLETSKVLPIQDNVSKDVPQT LETSKVLPIQDNVSKDVPQTRWGYWGSWGK K V L S K D 0 0 1 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 10 0 1111.6237 Q9NRY5;E5RK42;E5RHP2;E5RHI8;E5RFK2;E5RGF9 Q9NRY5 66 75 FAM114A2 Protein FAM114A2 yes no 2 0.0097925 44.753 By matching By MS/MS 1 1 0.99752 0.91083 12.662 2 Median 0.85746 0.83282 NaN 1 0 Median 1.1605 0.99615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5589200 2695900 2893400 2157900 1054300 1103600 3431300 1641500 1789700 0 0 0 0 0 0 0 0 0 0 0 0 36652 4095 38519 194053;194054 197205 197205 1 VLPITVPK PTKILEDVVGVPEKKVLPITVPKSPAFALK VGVPEKKVLPITVPKSPAFALKNRIRMPTK K V L P K S 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 8 0 865.56369 Q9ULW0 Q9ULW0 478 485 TPX2 Targeting protein for Xklp2 yes yes 2 0.029451 39.646 By MS/MS By matching By matching By matching 1 4 1 2 0.92285 0.78483 20.161 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.026 1.1286 NaN 1 0 Median 0.93095 0.7785 19.573 4 0 Median 0.82458 0.85097 NaN 1 0 Median 0.85967 0.72567 8.5397 2 0 Median 11777000 5891600 5885000 0 0 0 0 0 0 6093100 2836600 3256500 2458500 1258900 1199600 2355700 1337000 1018700 869260 459080 410180 36653 4330 38520 194055;194056;194057;194058;194059;194060;194061;194062 197206;197207 197207 2 VLPLEALVTDAGEVTEAGK HGLLEELKTVLSSHKVLPLEALVTDAGEVT EALVTDAGEVTEAGKAYVPPRVLQEALCVI K V L G K A 3 0 0 1 0 0 3 2 0 0 3 1 0 0 1 0 2 0 0 3 0 0 19 0 1911.0201 Q92616 Q92616 617 635 GCN1L1 Translational activator GCN1 yes yes 2 4.5812E-07 68.83 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 1 1 0.89102 0.8397 11.478 9 Median 0.89496 0.8771 5.9648 2 0 Median 0.91774 0.79766 3.9122 3 1 Median 0.89102 0.98813 NaN 1 0 Median 0.88395 0.80101 NaN 1 0 Median 0.67193 0.69828 NaN 1 0 Median 1.1392 0.99 NaN 1 0 Median 15710000 8081500 7628700 11330000 5817400 5512200 3045900 1619300 1426600 869210 429820 439390 78879 42840 36039 259760 114580 145180 126850 57507 69348 36654 3544 38521 194063;194064;194065;194066;194067;194068;194069;194070;194071 197208;197209;197210;197211;197212 197212 5 VLPMNTGVEAGETACK GEYEEYITKLFNYHKVLPMNTGVEAGETAC LPMNTGVEAGETACKLARKWGYTVKGIQKY K V L C K L 2 0 1 0 1 0 2 2 0 0 1 1 1 0 1 0 2 0 0 2 0 0 16 0 1675.7909 P04181 P04181 136 151 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.00013161 51.841 By matching By MS/MS 1 1 1.2869 1.15 11.929 2 Median 1.3402 1.2512 NaN 1 0 Median 1.2357 1.057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9576400 4267700 5308700 4071000 1860700 2210300 5505400 2407000 3098400 0 0 0 0 0 0 0 0 0 0 0 0 36655 1846 38522 194072;194073 197213;197214 197213 2 VLPPNWK ESRIHRLARYYKTKRVLPPNWKYESSTASA ARYYKTKRVLPPNWKYESSTASALVA____ R V L W K Y 0 0 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 1 0 1 0 0 7 0 852.48577 P62277 P62277 134 140 RPS13 40S ribosomal protein S13 yes yes 2 0.01102 80.999 By MS/MS By MS/MS 2 1 0.84066 0.74373 4.833 3 Median 0.80354 0.75819 6.6518 2 0 Median 0.87021 0.74373 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44735000 23755000 20981000 27298000 15057000 12241000 17437000 8697700 8739600 0 0 0 0 0 0 0 0 0 0 0 0 36656 2580 38523 194074;194075;194076 197215;197216;197217;197218;197219;197220;197221;197222;197223;197224;197225;197226;197227;197228;197229;197230 197226 16 VLPPPAGYVPIR LSDEELDAMFPEGYKVLPPPAGYVPIRTPA GYKVLPPPAGYVPIRTPARKLTATPTPLGG K V L I R T 1 1 0 0 0 0 0 1 0 1 1 0 0 0 4 0 0 0 1 2 0 0 12 0 1277.7496 O75533 O75533 414 425 SF3B1 Splicing factor 3B subunit 1 yes yes 2 4.0564E-06 117.04 By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 0.51354 0.50561 59.709 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89906 1.0018 81.123 2 0 Median 0.64448 0.54861 NaN 1 0 Median 0.48517 0.49802 2.1371 2 0 Median 0.41032 0.3387 52.131 2 0 Median 56945000 36060000 20885000 0 0 0 0 0 0 24126000 14900000 9225400 2372100 1534400 837660 28642000 18412000 10230000 1805300 1213200 592120 36657 1683 38524 194077;194078;194079;194080;194081;194082;194083 197231;197232;197233;197234;197235;197236;197237;197238;197239;197240;197241;197242;197243;197244;197245;197246;197247;197248;197249;197250;197251;197252;197253;197254;197255;197256;197257;197258;197259;197260 197236 30 VLPQLISTITASVQNPALR SMNAMGSLSVLSPDRVLPQLISTITASVQN LISTITASVQNPALRLVTREEFAIMQTPAG R V L L R L 2 1 1 0 0 2 0 0 0 2 3 0 0 0 2 2 2 0 0 2 0 0 19 0 2020.1681 Q92616 Q92616 738 756 GCN1L1 Translational activator GCN1 yes yes 3 8.7481E-06 48.883 By MS/MS By MS/MS 1 2 0.87432 0.74729 1.688 3 Median 0.76681 0.7668 NaN 1 0 Median 0.88432 0.74505 0.42327 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5873600 3058100 2815500 817690 464060 353620 5055900 2594000 2461900 0 0 0 0 0 0 0 0 0 0 0 0 36658 3544 38525 194084;194085;194086 197261;197262;197263 197263 3 VLPSFWIPSLTPEAK QPGPSVGPPSKDKDKVLPSFWIPSLTPEAK VLPSFWIPSLTPEAKATKLEKPSRTVTCPM K V L A K A 1 0 0 0 0 0 1 0 0 1 2 1 0 1 3 2 1 1 0 1 0 0 15 0 1683.9236 Q9Y314;M0R3B2;A0A075B6F9;A0A075B797 Q9Y314 158 172 NOSIP Nitric oxide synthase-interacting protein yes no 2 0.0025188 54.471 By MS/MS By MS/MS 1 1 0.49265 0.41522 31.091 2 Median NaN NaN NaN 0 0 Median 0.39691 0.33327 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.61148 0.51732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7845000 5190200 2654700 0 0 0 6134200 4193900 1940300 0 0 0 1710700 996300 714400 0 0 0 0 0 0 36659 4401 38526 194087;194088 197264;197265;197266 197264 3 VLPSITTEILK LPRIFTSIGEDYDERVLPSITTEILKSVVA YDERVLPSITTEILKSVVARFDAGELITQR R V L L K S 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1212.7329 P35232;C9JW96;E9PCW0;C9JZ20;E7ESE2 P35232 118 128 PHB Prohibitin yes no 2 0.00014501 84.213 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 4 2 1 2 2 1.3049 1.0938 17.332 13 Median 0.89189 0.81486 0.32246 2 0 Median 1.3006 1.0841 6.4243 4 0 Median 1.0325 0.97792 7.2424 2 0 Median 1.4136 1.1683 NaN 1 0 Median 1.3649 1.4221 1.3808 2 0 Median 1.3729 1.1426 1.6371 2 0 Median 417130000 206580000 210550000 274020000 143080000 130940000 79658000 35250000 44408000 28859000 14168000 14691000 1247800 482920 764860 14795000 5837400 8958000 18550000 7763800 10786000 36660 2233 38527 194089;194090;194091;194092;194093;194094;194095;194096;194097;194098;194099;194100;194101 197267;197268;197269;197270;197271;197272;197273;197274;197275;197276;197277;197278 197269 12 VLPSIVNEVLK LPSMYQRLGLDYEERVLPSIVNEVLKSVVA YEERVLPSIVNEVLKSVVAKFNASQLITQR R V L L K S 0 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 0 3 0 0 11 0 1209.7333 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6 J3KPX7 132 142 PHB2 Prohibitin-2 yes no 2 0.00017064 108.43 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 5 1 1 2 6 1.2432 1.0351 19.444 16 Median 0.88468 0.79922 NaN 1 0 Median 1.2495 1.0431 5.6958 5 0 Median 0.95206 0.91528 NaN 1 0 Median 1.4183 1.2077 NaN 1 0 Median 1.5029 1.5155 9.8597 2 0 Median 1.2314 1.0204 16.866 6 0 Median 374180000 176510000 197680000 146190000 77056000 69134000 181260000 78576000 102680000 7502800 3873200 3629600 1010000 434520 575460 4297300 1752400 2544900 33929000 14814000 19115000 36661 1313 38528 194102;194103;194104;194105;194106;194107;194108;194109;194110;194111;194112;194113;194114;194115;194116;194117 197279;197280;197281;197282;197283;197284;197285;197286;197287;197288;197289 197282 10 VLPSNAVWMENSK FLSTLDPKTISFRSRVLPSNAVWMENSKLK SRVLPSNAVWMENSKLKSLEICHPQERNIF R V L S K L 1 0 2 0 0 0 1 0 0 0 1 1 1 0 1 2 0 1 0 2 0 0 13 0 1473.7286 Q9Y305;H7C5Q2 Q9Y305 280 292 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 7.9643E-07 140.49 By MS/MS By matching By MS/MS By MS/MS 2 2 2 3 0.80714 0.71666 24.351 8 Median 0.74151 0.68513 1.6183 2 0 Median 1.0192 0.87039 22.739 2 0 Median 0.66642 0.64888 8.1774 2 0 Median 1.2245 1.1008 5.8823 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 126770000 63937000 62828000 67708000 36395000 31313000 9856800 4283800 5573000 26026000 14070000 11956000 23174000 9188300 13986000 0 0 0 0 0 0 36662 4400 38529;38530 194118;194119;194120;194121;194122;194123;194124;194125;194126 197290;197291;197292;197293;197294;197295;197296;197297;197298;197299;197300;197301 197296 1967 12 VLPTQPNPVDASR LQSLDLEFGSGFQPRVLPTQPNPVDASRAQ PRVLPTQPNPVDASRAQFFLHLSPSHYALL R V L S R A 1 1 1 1 0 1 0 0 0 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1392.7361 Q8N766 Q8N766 276 288 EMC1 ER membrane protein complex subunit 1 yes yes 2 0.00058618 69.979 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.85469 0.8088 38.081 4 Median 0.58907 0.5714 NaN 1 0 Median 0.82998 0.69553 NaN 1 0 Median 0.88012 0.94052 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1601 1.3687 NaN 1 0 Median NaN NaN NaN 0 0 Median 14617000 7943300 6673600 3519200 2317600 1201600 8579600 4371600 4208000 1968800 994840 973910 0 0 0 549310 259220 290090 0 0 0 36663 3392 38531 194127;194128;194129;194130 197302;197303;197304;197305 197304 4 VLPTYDASK KYADEEIPRSPFKVKVLPTYDASKVTASGP SPFKVKVLPTYDASKVTASGPGLSSYGVPA K V L S K V 1 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 1 0 1 1 0 0 9 0 992.51786 O75369;E7EN95 O75369 1511 1519 FLNB Filamin-B yes no 2 0.0065478 69.628 By matching By MS/MS By MS/MS 2 1 1 1.1209 1.0542 33.076 4 Median 1.0112 0.98768 22.745 2 0 Median 1.0751 0.9581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.09 1.7931 NaN 1 0 Median 30135000 14357000 15777000 6522800 3226400 3296400 22645000 10816000 11830000 0 0 0 0 0 0 0 0 0 966560 315200 651350 36664 1664 38532 194131;194132;194133;194134 197306;197307 197306 2 VLPVFYFAR DPFLYLPVPLPQKQKVLPVFYFAREPHSKP LPQKQKVLPVFYFAREPHSKPIKFLVSVSK K V L A R E 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 1 2 0 0 9 0 1110.6226 O94966;E7ESU0 O94966 682 690 USP19 Ubiquitin carboxyl-terminal hydrolase 19;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.05311 30.185 By MS/MS By matching By matching 3 1 1 0.9226 0.90563 17.377 5 Median 1.0571 1.0558 13.412 3 0 Median 0.91196 0.80003 NaN 1 0 Median 0.75066 0.79745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2237900 1110000 1127900 1725700 882840 842830 291360 98226 193130 220860 128970 91889 0 0 0 0 0 0 0 0 0 36665 1740 38533 194135;194136;194137;194138;194139 197308 197308 1 VLPYSNITVR PRLLSVKGSPKVDEKVLPYSNITVREESLK KVDEKVLPYSNITVREESLKFNPYDSSRRE K V L V R E 0 1 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 2 0 0 10 0 1160.6554 Q96T58 Q96T58 1294 1303 SPEN Msx2-interacting protein yes yes 2 0.014222 39.022 By MS/MS By MS/MS 1 1 1.4786 1.3838 58.078 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.985 2.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1014 0.91777 NaN 1 0 Median 19583000 6080500 13502000 0 0 0 0 0 0 17942000 5288400 12654000 0 0 0 0 0 0 1640300 792100 848210 36666 3741 38534 194140;194141 197309;197310 197310 2 VLQAELK RSMVMRYGSRLWKLRVLQAELKINIRLTPT GSRLWKLRVLQAELKINIRLTPTGKAIPIR R V L L K I 1 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 799.48035 Q13085;Q59FY4 Q13085 1508 1514 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.024489 55.441 By matching By MS/MS 1 1 1.0399 0.95506 5.8574 2 Median 0.9449 0.91632 NaN 1 0 Median 1.1445 0.99545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1716700 797010 919690 789300 372330 416970 927410 424680 502720 0 0 0 0 0 0 0 0 0 0 0 0 36667 2784 38535 194142;194143 197311 197311 1 VLQALEGLK MPSHFSRGSKSVARRVLQALEGLKMVEKDQ KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R V L L K M 1 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 969.58588 P39019;A0A075B6E2 P39019 103 111 RPS19 40S ribosomal protein S19 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 3 2 1.2342 1.0772 17.129 13 Median 1.3531 1.2496 20.333 4 2 Median 1.1989 1.0172 3.5316 3 1 Plateau 1.2342 1.165 NaN 1 0 Median 1.3438 1.0772 3.6338 3 0 Median 0.92609 1.0092 26.438 2 0 Median NaN NaN NaN 0 0 Median 425500000 194310000 231190000 237100000 110400000 126710000 78478000 35273000 43204000 68354000 30791000 37563000 28161000 11997000 16164000 13404000 5852100 7551600 0 0 0 36668 2280 38536 194144;194145;194146;194147;194148;194149;194150;194151;194152;194153;194154;194155;194156 197312;197313;197314;197315;197316;197317;197318;197319;197320;197321;197322;197323;197324;197325;197326;197327;197328;197329;197330;197331;197332;197333;197334;197335 197315 24 VLQALGSEPIQYAVPVVK LFISTRLGTDEISPRVLQALGSEPIQYAVP ALGSEPIQYAVPVVKYDRKGYKPRSRQLLL R V L V K Y 2 0 0 0 0 2 1 1 0 1 2 1 0 0 2 1 0 0 1 4 0 0 18 0 1910.0877 F5H6E2;O00159 F5H6E2 886 903 MYO1C Unconventional myosin-Ic yes no 2 0.00068444 38.021 By MS/MS By MS/MS 2 2 0.74882 0.78642 13.291 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80919 0.8569 18.414 2 0 Median NaN NaN NaN 0 0 Median 0.74849 0.77152 8.9825 2 0 Median NaN NaN NaN 0 0 Median 4500700 2420100 2080600 0 0 0 0 0 0 2614000 1376000 1238000 0 0 0 1886800 1044100 842660 0 0 0 36669 1042 38537 194157;194158;194159;194160 197336;197337 197336 2 VLQAPPPDVGNGEVPK PLLDLPELPFPELERVLQAPPPDVGNGEVP LQAPPPDVGNGEVPKELVELHLKLMRKIGK R V L P K E 1 0 1 1 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 3 0 0 16 0 1615.857 Q96T23;H0YER1;H7C306 Q96T23 50 65 RSF1 Remodeling and spacing factor 1 yes no 2 0.00017621 50.207 By MS/MS 1 0.39833 0.42002 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.39833 0.42002 NaN 1 0 Median NaN NaN NaN 0 0 Median 2813700 1574200 1239500 0 0 0 0 0 0 0 0 0 0 0 0 2813700 1574200 1239500 0 0 0 36670 3740 38538 194161 197338 197338 1 VLQAQGSSDPEEESVLYSNR GQYAEASALYGRALRVLQAQGSSDPEEESV GSSDPEEESVLYSNRAACHLKDGNCRDCIK R V L N R A 1 1 1 1 0 2 3 1 0 0 2 0 0 0 1 4 0 0 1 2 0 0 20 0 2207.0342 Q15785 Q15785 38 57 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2;3 7.3751E-19 116.96 By matching By matching By MS/MS By MS/MS 1 1 3 2 1.1138 1.0012 8.0372 7 Median 1.1615 1.1237 NaN 1 0 Median 1.1123 0.95298 NaN 1 0 Median 1.0182 1.0017 7.3387 3 2 Median 1.1265 0.94234 1.4047 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25911000 12604000 13306000 2168200 974520 1193600 580340 283760 296580 20557000 10219000 10338000 2604800 1126900 1477900 0 0 0 0 0 0 36671 2971 38539 194162;194163;194164;194165;194166;194167;194168 197339;197340;197341;197342;197343;197344;197345 197340 7 VLQATVVAVGSGSK VTKGGIMLPEKSQGKVLQATVVAVGSGSKG KVLQATVVAVGSGSKGKGGEIQPVSVKVGD K V L S K G 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 2 1 0 0 4 0 0 14 0 1314.7507 S4R3N1;P61604;B8ZZL8 P61604 41 54 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2;3 6.9551E-11 170.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 2 1 1.2692 1.1299 18.888 13 Median 1.1504 1.0164 32.91 3 1 Median 1.4237 1.1582 2.5145 3 1 Median 1.227 1.2024 1.2377 2 0 Median 1.4279 1.1059 3.0397 2 0 Median 1.1805 1.2577 2.4656 2 0 Median 1.3184 1.0733 NaN 1 0 Median 3027200000 1315900000 1711400000 1264700000 581010000 683690000 1669100000 693010000 976080000 77313000 34976000 42337000 10483000 4366000 6117000 4643900 2086600 2557300 977350 404730 572610 36672 2560;4561 38540 194169;194170;194171;194172;194173;194174;194175;194176;194177;194178;194179;194180;194181 197346;197347;197348;197349;197350;197351;197352;197353;197354;197355;197356;197357;197358;197359;197360;197361;197362;197363;197364;197365;197366;197367;197368;197369;197370;197371;197372;197373;197374;197375;197376;197377;197378;197379;197380 197373 35 VLQATVVAVGSGSKGK VTKGGIMLPEKSQGKVLQATVVAVGSGSKG LQATVVAVGSGSKGKGGEIQPVSVKVGDKV K V L G K G 2 0 0 0 0 1 0 3 0 0 1 2 0 0 0 2 1 0 0 4 0 0 16 1 1499.8671 S4R3N1;P61604;B8ZZL8 P61604 41 56 HSPE1-MOB4;HSPE1 10 kDa heat shock protein, mitochondrial no no 2;3 2.2121E-09 113.24 By MS/MS By MS/MS 2 3 1.3602 1.1792 7.1167 5 Median 1.2618 1.1816 7.0591 2 0 Median 1.4989 1.2868 8.7324 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15387000 6516700 8869900 2871400 1307000 1564300 12515000 5209700 7305600 0 0 0 0 0 0 0 0 0 0 0 0 36673 2560;4561 38541 194182;194183;194184;194185;194186 197381;197382;197383;197384;197385;197386 197386 6 VLQDLVMDILR LDRLIELKEHPAHERVLQDLVMDILRVLST AHERVLQDLVMDILRVLSTPDLEVRKKTLQ R V L L R V 0 1 0 2 0 1 0 0 0 1 3 0 1 0 0 0 0 0 0 2 0 0 11 0 1313.7377 P53618;E9PP73 P53618 317 327 COPB1 Coatomer subunit beta yes no 2 0.00015693 114.84 By MS/MS By MS/MS By matching By MS/MS By matching 5 4 1 1 1 1.1383 0.99754 45.226 12 Median 1.1224 1.0853 34.064 5 1 Median 1.0888 0.94121 7.8951 4 0 Median 1.2844 1.3488 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.685 3.9034 NaN 1 0 Median 1.1568 0.98219 NaN 1 0 Median 72029000 35527000 36502000 9816000 5122400 4693500 61071000 30065000 31006000 424410 174010 250410 0 0 0 615290 114020 501270 102560 51608 50953 36674 2472 38542;38543 194187;194188;194189;194190;194191;194192;194193;194194;194195;194196;194197;194198 197387;197388;197389;197390;197391;197392;197393 197387 1161 7 VLQDLVPDDR ELASAELAKEWPKRKVLQDLVPDDRKLKYT WPKRKVLQDLVPDDRKLKYTRPGLPTFSQE K V L D R K 0 1 0 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1168.6088 G3XAG1;Q96ME7 G3XAG1 366 375 ZNF512 Zinc finger protein 512 yes no 2 0.00036244 87.308 By MS/MS 1 0.92205 0.95112 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92205 0.95112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4888700 2412600 2476100 0 0 0 0 0 0 4888700 2412600 2476100 0 0 0 0 0 0 0 0 0 36675 1124 38544 194199 197394;197395 197394 2 VLQDMGLPTGAEGR SGPSKKTAKLHVAVKVLQDMGLPTGAEGRD KVLQDMGLPTGAEGRDSSKGEDSAEETEAK K V L G R D 1 1 0 1 0 1 1 3 0 0 2 0 1 0 1 0 1 0 0 1 0 0 14 0 1442.7188 Q12906 Q12906 461 474 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 5.2685E-08 150.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 6 6 7 6 0.90424 0.87202 33.13 31 Median 0.94273 0.89819 20.882 4 1 Median 0.99446 0.85058 19.181 2 0 Median 0.86769 0.88997 5.0056 6 2 Median 1.0726 0.91646 15.981 6 0 Median 0.87275 0.87545 9.6545 7 1 Median 0.98559 0.82133 68.139 6 0 Median 919320000 475790000 443530000 69617000 32904000 36713000 22027000 10295000 11732000 324220000 171280000 152940000 37318000 17776000 19542000 417330000 217870000 199460000 48814000 25668000 23146000 36676 2769 38545;38546 194200;194201;194202;194203;194204;194205;194206;194207;194208;194209;194210;194211;194212;194213;194214;194215;194216;194217;194218;194219;194220;194221;194222;194223;194224;194225;194226;194227;194228;194229;194230 197396;197397;197398;197399;197400;197401;197402;197403;197404;197405;197406;197407;197408;197409;197410;197411;197412;197413;197414;197415;197416;197417;197418;197419;197420;197421;197422;197423;197424;197425;197426;197427;197428;197429;197430;197431;197432;197433;197434;197435;197436;197437;197438;197439;197440;197441;197442;197443 197398 1492 48 VLQDWNALK HDLEPPRFAQLALERVLQDWNALKSMIMFG QLALERVLQDWNALKSMIMFGSQENKDPLS R V L L K S 1 0 1 1 0 1 0 0 0 0 2 1 0 0 0 0 0 1 0 1 0 0 9 0 1085.5869 O95071;E7EMW7 O95071 1332 1340 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 2 0.0083383 75.213 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36677 1744 38547 194231 197444 197444 1 VLQEDILLRK DYSTEGLWKQQSELRVLQEDILLRKQNVDQ QSELRVLQEDILLRKQNVDQALLNGLELLK R V L R K Q 0 1 0 1 0 1 1 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 10 1 1225.7394 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3569 3578 DST Dystonin yes no 3 0.002844 42.001 By MS/MS 1 1.2442 1.2741 NaN 1 Median 1.2442 1.2741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2674800 1127300 1547500 2674800 1127300 1547500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36678 934 38548 194232 197445 197445 1 VLQENNEGLR SEEVRPNIAEIEDIRVLQENNEGLRAFLLT IEDIRVLQENNEGLRAFLLTIENELKNEKE R V L L R A 0 1 2 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1170.5993 Q96Q89 Q96Q89 879 888 KIF20B Kinesin-like protein KIF20B yes yes 2 0.0045773 52.716 By MS/MS 1 0.88248 0.98003 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88248 0.98003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2982700 1389000 1593700 0 0 0 0 0 0 2982700 1389000 1593700 0 0 0 0 0 0 0 0 0 36679 3717 38549 194233 197446 197446 1 VLQGDLVMNVYR SHVPEVDPGSAELQKVLQGDLVMNVYRDGA LQKVLQGDLVMNVYRDGAWGAFRHFLLEED K V L Y R D 0 1 1 1 0 1 0 1 0 0 2 0 1 0 0 0 0 0 1 3 0 0 12 0 1405.7388 P49327;A0A0U1RQF0 P49327 1496 1507 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 5.5387E-15 189.38 By MS/MS By MS/MS By matching By matching 5 4 1 1 1.1984 1.0724 37.749 10 Median 1.0505 0.99507 2.2558 5 1 Median 1.5031 1.2606 8.2817 3 0 Plateau 1.4125 1.5603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.9383 3.3254 NaN 1 0 Median 279050000 131110000 147930000 190160000 93533000 96623000 84393000 35721000 48672000 4305500 1815500 2490000 0 0 0 0 0 0 191770 45213 146550 36680 2377 38550;38551 194234;194235;194236;194237;194238;194239;194240;194241;194242;194243;194244 197447;197448;197449;197450;197451;197452;197453;197454;197455;197456;197457;197458;197459 197449 1093 13 VLQGLIEVR RSGEQCSVEPDLISKVLQGLIEVRSPHLEE PDLISKVLQGLIEVRSPHLEELLTAFFSAT K V L V R S 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1025.6233 Q8N201 Q8N201 1544 1552 INTS1 Integrator complex subunit 1 yes yes 2 0.00088636 92.439 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.2952 1.0636 16.489 5 Median 1.4875 1.4898 NaN 1 0 Median 1.2796 1.0636 NaN 1 0 Median 0.94257 1.039 NaN 1 0 Median 1.5324 1.3409 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2952 1.0615 NaN 1 0 Median 7979700 4154800 3824900 956190 605530 350660 1431800 595300 836520 4998400 2688200 2310200 427310 201590 225720 0 0 0 166000 64211 101790 36681 3360 38552 194245;194246;194247;194248;194249 197460;197461;197462 197460 3 VLQHYQESDKGEELGPGNVQK PRLCSGVLGTVVHGKVLQHYQESDKGEELG ESDKGEELGPGNVQKEVSSSFDHVIKETTR K V L Q K E 0 0 1 1 0 3 3 3 1 0 2 2 0 0 1 1 0 0 1 2 0 0 21 1 2354.1503 Q9Y6C9 Q9Y6C9 91 111 MTCH2 Mitochondrial carrier homolog 2 yes yes 3;4 8.3634E-13 80.238 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 2 2 1.1421 1.0155 16.755 12 Median 0.86576 0.84045 2.8672 3 2 Plateau 1.235 1.1215 9.3463 4 1 Median 0.81159 0.84848 NaN 1 0 Median 1.2625 1.1086 15.871 2 1 Median NaN NaN NaN 0 0 Median 1.186 1.0186 9.6442 2 0 Median 112840000 54595000 58247000 57214000 29570000 27643000 30543000 13374000 17170000 7967800 4150400 3817500 8574500 3910500 4664100 0 0 0 8542400 3590200 4952200 36682 4488 38553 194250;194251;194252;194253;194254;194255;194256;194257;194258;194259;194260;194261 197463;197464;197465;197466;197467;197468;197469;197470;197471;197472;197473;197474;197475;197476;197477;197478;197479;197480;197481;197482 197470 20 VLQIVTNRDDVQGYAAK IRIAGDYVSEEVWYRVLQIVTNRDDVQGYA QIVTNRDDVQGYAAKTVFEALQAPACHENM R V L A K T 2 1 1 2 0 2 0 1 0 1 1 1 0 0 0 0 1 0 1 3 0 0 17 1 1889.0007 O95782 O95782 465 481 AP2A1 AP-2 complex subunit alpha-1 yes yes 2;3 4.0647E-11 136.27 By MS/MS By matching By MS/MS By matching By matching By matching 3 2 2 1 1 1 1.2332 1.2697 12.017 10 Median 1.2633 1.3175 18.63 3 0 Plateau 1.3552 1.3239 9.1885 2 0 Median 1.1945 1.3548 3.7348 2 0 Median 1.3289 1.2678 NaN 1 0 Median 1.0033 1.1034 NaN 1 0 Median 1.4088 1.2357 NaN 1 0 Median 67627000 29178000 38449000 31946000 13858000 18088000 3773700 1425400 2348300 23195000 9310100 13885000 1130200 510190 620030 6837900 3721900 3116000 744350 352720 391640 36683 1793 38554 194262;194263;194264;194265;194266;194267;194268;194269;194270;194271 197483;197484;197485;197486;197487 197486 5 VLQLFTR LQAHGHDVNSFVRSRVLQLFTRIVQQKALP VNSFVRSRVLQLFTRIVQQKALPLTRFQAV R V L T R I 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 7 0 875.52289 Q15021;E7EN77 Q15021 384 390 NCAPD2 Condensin complex subunit 1 yes no 2 0.0030389 105.39 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 1 1 1 4 1.2021 1.0897 16.951 9 Median 1.1833 1.1153 NaN 1 0 Median 1.2879 1.0897 NaN 1 0 Median 1.3812 1.5147 NaN 1 0 Median 1.2497 1.0946 NaN 1 0 Median 1.4125 1.4766 NaN 1 0 Median 1.1637 1.0006 5.1227 4 0 Median 17401000 7621800 9779100 7594800 3473400 4121400 4351200 1841600 2509600 2565600 1062900 1502800 513820 247010 266810 1477900 569120 908800 897580 427820 469760 36684 2915 38555 194272;194273;194274;194275;194276;194277;194278;194279;194280 197488;197489;197490 197488 3 VLQLINDNTATALSYGVFR ERRAVLQAARMAGLKVLQLINDNTATALSY INDNTATALSYGVFRRKDINTTAQNIMFYD K V L F R R 2 1 2 1 0 1 0 1 0 1 3 0 0 1 0 1 2 0 1 2 0 0 19 0 2094.111 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2;J3KTF1 A0A087X054 199 217 HYOU1 Hypoxia up-regulated protein 1 yes no 2;3 7.4367E-08 78.763 By MS/MS 3 1.1989 1.2036 5.5171 3 Median 1.1989 1.2036 5.5171 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7314500 3184300 4130300 7314500 3184300 4130300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36685 101 38556 194281;194282;194283 197491;197492;197493;197494 197491 4 VLQLMLR KDFTKQKYPEHAIHKVLQLMLRRGEIQHRM YPEHAIHKVLQLMLRRGEIQHRMQRKVLYR K V L L R R 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 7 0 871.53134 P33992;B1AHB1 P33992 711 717 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.0024619 126.05 By MS/MS By matching By MS/MS By matching 4 3 2 1 1.0259 1.0209 10.096 10 Median 1.0055 0.99538 12.682 4 0 Median 1.2725 1.0999 8.7401 3 0 Median 0.92999 0.96996 8.8918 2 0 Median NaN NaN NaN 0 0 Median 1.0257 1.0932 NaN 1 0 Median NaN NaN NaN 0 0 Median 59704000 28830000 30874000 29167000 14480000 14688000 13909000 6018400 7890400 14997000 7579100 7417700 0 0 0 1631200 752700 878510 0 0 0 36686 2224 38557 194284;194285;194286;194287;194288;194289;194290;194291;194292;194293 197495;197496;197497;197498;197499;197500;197501;197502 197495 8 VLQLMNLTDSR STDEQDAMDGELVCRVLQLMNLTDSRLAQA LVCRVLQLMNLTDSRLAQAGNEKLELAMLS R V L S R L 0 1 1 1 0 1 0 0 0 0 3 0 1 0 0 1 1 0 0 1 0 0 11 0 1288.6809 E7ESC6;Q9UIA9 E7ESC6 528 538 XPO7 Exportin-7 yes no 2 0.00053328 91.584 By MS/MS 2 1.0153 0.97833 NaN 1 Median 1.0153 0.97833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10773000 5166100 5607000 10773000 5166100 5607000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36687 885 38558 194294;194295 197503;197504 197503 2 VLQLSDTAIVPIGYHVPR VPRQALAVMSCEVLRVLQLSDTAIVPIGYH LSDTAIVPIGYHVPRKAVEFHEDLFPDTAG R V L P R K 1 1 0 1 0 1 0 1 1 2 2 0 0 0 2 1 1 0 1 3 0 0 18 0 1977.1047 A0A0A6YYL4;P57737;E7EP81;I3L167;I3L212 A0A0A6YYL4 330 347 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 3 1.6504E-06 60.918 By MS/MS By matching 1 1 0.51964 0.49455 84.849 2 Median 0.93196 0.9011 NaN 1 0 Median 0.28973 0.27142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7245900 4122500 3123400 5674600 2943800 2730900 1571300 1178700 392590 0 0 0 0 0 0 0 0 0 0 0 0 36688 209 38559 194296;194297 197505;197506 197505 2 VLQLTSWDEDAWASK FTVEKMSAEINEIIRVLQLTSWDEDAWASK VLQLTSWDEDAWASKDTEAMKRALASIDSK R V L S K D 2 0 0 2 0 1 1 0 0 0 2 1 0 0 0 2 1 2 0 1 0 0 15 0 1747.8417 P18206 P18206 247 261 VCL Vinculin yes yes 2 0.0080393 32.523 By MS/MS By matching By matching 2 1 1 1.0541 0.96085 23.33 4 Median 0.88754 0.88224 23.352 2 0 Median 1.0399 0.88718 NaN 1 0 Median 1.1952 1.2935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14902000 7468900 7433200 6700000 3372100 3327900 5276200 2715200 2561000 2925800 1381600 1544200 0 0 0 0 0 0 0 0 0 36689 2057 38560 194298;194299;194300;194301 197507 197507 1 VLQLYPNNK LAVNDFELARADFQKVLQLYPNNKAAKTQL RADFQKVLQLYPNNKAAKTQLAVCQQRIRR K V L N K A 0 0 2 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 9 0 1087.6026 Q02790;H0YFG2 Q02790 379 387 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes no 2 0.00067508 105.39 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 0.94603 0.85394 10.419 6 Median 0.94641 0.87094 7.4145 3 0 Median 0.94566 0.80135 NaN 1 0 Median 1.0279 1.0153 NaN 1 1 Median 0.91143 0.78217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72874000 37783000 35091000 49924000 25834000 24090000 12316000 6550000 5766300 7440000 3785800 3654100 3193600 1612500 1581200 0 0 0 0 0 0 36690 2701 38561 194302;194303;194304;194305;194306;194307 197508;197509;197510;197511;197512;197513;197514 197509 7 VLQLYQITQINHGLMMVGPSGSGK TYGDGEEVGGMWVEKVLQLYQITQINHGLM INHGLMMVGPSGSGKSMAWRVLLKALERLE K V L G K S 0 0 1 0 0 3 0 4 1 2 3 1 2 0 1 2 1 0 1 2 0 0 24 0 2570.3349 Q14204;A0A2R8YFZ7 Q14204 2207 2230 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 3 2.351E-19 85.932 By MS/MS By MS/MS By matching 2 1 2 0.96963 0.9432 12.528 5 Median 0.98792 0.96391 8.4976 2 0 Median 1.0679 0.9432 NaN 1 0 Median 0.82073 0.90444 22.675 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33703000 16726000 16977000 22170000 11034000 11136000 10262000 4967100 5295300 1270800 725060 545760 0 0 0 0 0 0 0 0 0 36691 2865 38562 194308;194309;194310;194311;194312 197515;197516;197517;197518;197519;197520 197519 6 VLQNIIK LYQKTACHKAVVNEKVLQNIIKTLRVPLSL HKAVVNEKVLQNIIKTLRVPLSLKYSCPSE K V L I K T 0 0 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 826.52764 A0A286YFF8;Q7Z3U7 A0A286YFF8 1436 1442 MON2 Protein MON2 homolog yes no 2 0.01526 72.021 By MS/MS 1 1.0885 0.96138 NaN 1 Median NaN NaN NaN 0 0 Median 1.0885 0.96138 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1978100 904680 1073400 0 0 0 1978100 904680 1073400 0 0 0 0 0 0 0 0 0 0 0 0 36692 353 38563 194313 197521;197522 197521 2 VLQNMVLELSPK LQIKLNAEENDKLYKVLQNMVLELSPKELD LYKVLQNMVLELSPKELDEKNCQDKLETSL K V L P K E 0 0 1 0 0 1 1 0 0 0 3 1 1 0 1 1 0 0 0 2 0 0 12 0 1369.7639 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 3136 3147 SYNE2 Nesprin-2 yes no 2 1.7424E-05 97.456 By matching By MS/MS By matching 1 1 1 0.62004 0.61413 9.5242 3 Median 0.62004 0.61413 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56448 0.60388 NaN 1 0 Median 0.7764 0.71775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12445000 8760900 3684000 2577600 1557300 1020400 0 0 0 9367500 6867600 2499900 499800 336000 163800 0 0 0 0 0 0 36693 3521 38564 194314;194315;194316 197523;197524 197524 2 VLQPGTALFSR GRNRKAVLCQRCGSRVLQPGTALFSRRQLF CGSRVLQPGTALFSRRQLFLPSMRKKPALS R V L S R R 1 1 0 0 0 1 0 1 0 0 2 0 0 1 1 1 1 0 0 1 0 0 11 0 1187.6663 P47224 P47224 30 40 RABIF Guanine nucleotide exchange factor MSS4 yes yes 2 0.00011205 123.86 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.98591 0.91119 8.1848 4 Median 0.9299 0.90137 NaN 1 0 Median 0.97425 0.829 NaN 1 0 Median 0.99771 1.0117 NaN 1 0 Median 1.1635 0.92111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46841000 24480000 22361000 27456000 14657000 12798000 14436000 7419900 7016200 4357300 2064500 2292800 592190 338570 253620 0 0 0 0 0 0 36694 2353 38565 194317;194318;194319;194320 197525;197526;197527;197528 197526 4 VLQPHPVTPSDTETR PFAWKKKALIIIWAKVLQPHPVTPSDTETR VLQPHPVTPSDTETRWQEDLFFSVGNMIPT K V L T R W 0 1 0 1 0 1 1 0 1 0 1 0 0 0 3 1 3 0 0 2 0 0 15 0 1675.8529 I3L2C7;P57678;E7EN12;I3L4M4;I3L4A4;I3L399 I3L2C7 66 80 GEMIN4 Gem-associated protein 4 yes no 3 0.00042935 55.66 By MS/MS By MS/MS 1 1 0.74192 0.67664 13.871 2 Median 0.62182 0.61342 NaN 1 0 Median 0.88522 0.74637 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7545000 4125700 3419300 2160300 1187000 973250 5384700 2938600 2446100 0 0 0 0 0 0 0 0 0 0 0 0 36695 1282 38566 194321;194322 197529;197530 197530 2 VLQPTVFPVVPR GFFQGDIRLLMDDLKVLQPTVFPVVPRLLN DLKVLQPTVFPVVPRLLNRMFDRIFGQANT K V L P R L 0 1 0 0 0 1 0 0 0 0 1 0 0 1 3 0 1 0 0 4 0 0 12 0 1350.8024 E7EPM6;P33121;B7Z3Z9;D6RER0;H0Y9Z9 E7EPM6 323 334 ACSL1 Long-chain-fatty-acid--CoA ligase 1 yes no 2 0.00038563 80.239 By MS/MS By MS/MS By matching 2 2 1 0.70152 0.67315 30.549 5 Median 0.63282 0.62166 11.253 2 0 Median 0.66234 0.58371 27.756 2 0 Median 1.039 1.088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13506000 7553100 5952500 6975000 4018800 2956200 5350000 2936700 2413300 1180500 597630 582900 0 0 0 0 0 0 0 0 0 36696 871 38567 194323;194324;194325;194326;194327 197531;197532;197533 197531 3 VLQQAFNYLNQGVVHSITWK KILDQYRQKEYVAPRVLQQAFNYLNQGVVH FNYLNQGVVHSITWKQMKPHIQNISEDVIF R V L W K Q 1 0 2 0 0 3 0 1 1 1 2 1 0 1 0 1 1 1 1 3 0 0 20 0 2344.2328 O15397;F5H244 O15397 322 341 IPO8 Importin-8 yes no 3 3.4842E-06 48.112 By MS/MS By matching 1 1 1.3547 1.1551 11.678 2 Median NaN NaN NaN 0 0 Median 1.2478 1.0635 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4706 1.2545 NaN 1 0 Median 5812200 2560800 3251300 0 0 0 5450800 2406400 3044400 0 0 0 0 0 0 0 0 0 361410 154470 206940 36697 1545 38568 194328;194329 197534;197535 197535 2 VLQQFADNDVSR PILHGLCTFGFSARRVLQQFADNDVSRFKA ARRVLQQFADNDVSRFKAIKARFAKPVYPG R V L S R F 1 1 1 2 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 12 0 1390.6841 A0A2R8YD50;P51659;E7EWE5;G5E9S2;E7ET17;A0A2R8Y7L2;E7EPL9 A0A2R8YD50 544 555 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 2.854E-53 179.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 4 4 1 1.4028 1.2128 13.917 11 Median 1.1603 1.1194 7.4993 2 1 Median 1.4598 1.2679 11.487 4 2 Median 1.2763 1.2634 15.085 2 1 Median 1.5136 1.3018 16.179 2 1 Median NaN NaN NaN 0 0 Median 1.1706 0.9749 NaN 1 0 Median 219940000 85725000 134220000 24608000 11237000 13371000 26528000 10870000 15658000 74628000 27801000 46827000 93670000 35621000 58049000 0 0 0 511080 197050 314020 36698 393 38569 194330;194331;194332;194333;194334;194335;194336;194337;194338;194339;194340;194341;194342;194343;194344;194345 197536;197537;197538;197539;197540;197541;197542;197543;197544;197545;197546;197547;197548;197549;197550;197551;197552;197553 197542 18 VLQQTLNYINQGVSHALTWK KVLYQYKEKQYMAPRVLQQTLNYINQGVSH LNYINQGVSHALTWKNLKPHIQGIIQDVIF R V L W K N 1 0 2 0 0 3 0 1 1 1 3 1 0 0 0 1 2 1 1 2 0 0 20 0 2312.2277 O95373 O95373 321 340 IPO7 Importin-7 yes yes 3 6.7958E-09 76.155 By matching By MS/MS 1 2 1.1843 1.038 30.294 3 Median 1.7192 1.7421 NaN 1 0 Median 1.1783 1.031 0.959 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9415100 4450500 4964700 905030 386760 518270 8510100 4063700 4446400 0 0 0 0 0 0 0 0 0 0 0 0 36699 1768 38570 194346;194347;194348 197554;197555;197556 197556 3 VLQSALAAIR PNLRKLDPELHLDIKVLQSALAAIRHARWF HLDIKVLQSALAAIRHARWFEENASQSTVK K V L I R H 3 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1040.6342 B4DY09;Q12905 B4DY09 159 168 ILF2 Interleukin enhancer-binding factor 2 yes no 2 1.9778E-05 147.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 4 8 7 1.1799 1.021 13.334 28 Median 1.2468 1.2298 3.3132 3 0 Median 1.2712 1.0768 2.7463 3 0 Median 0.98607 0.95707 9.0966 4 0 Median 1.2014 1.0006 21.048 4 0 Median 1.0297 1.0371 12.139 8 0 Median 1.193 0.94197 6.2167 6 0 Median 2308800000 1069200000 1239600000 145110000 62735000 82375000 36160000 16293000 19867000 1153300000 540600000 612700000 124060000 54105000 69957000 609130000 299320000 309810000 241030000 96098000 144930000 36700 609 38571 194349;194350;194351;194352;194353;194354;194355;194356;194357;194358;194359;194360;194361;194362;194363;194364;194365;194366;194367;194368;194369;194370;194371;194372;194373;194374;194375;194376;194377 197557;197558;197559;197560;197561;197562;197563;197564;197565;197566;197567;197568;197569;197570;197571;197572;197573;197574;197575;197576;197577;197578;197579;197580;197581;197582;197583;197584;197585;197586;197587;197588;197589;197590;197591;197592;197593;197594;197595;197596;197597;197598;197599;197600;197601;197602;197603;197604;197605;197606;197607 197562 51 VLQSEGEAVDPEANVIK KDETNSIKREQETKKVLQSEGEAVDPEANV QSEGEAVDPEANVIKQNSGAATSEETLNDS K V L I K Q 2 0 1 1 0 1 3 1 0 1 1 1 0 0 1 1 0 0 0 3 0 0 17 0 1796.9156 Q8IWI9;H3BU53 Q8IWI9 1993 2009 MGA MAX gene-associated protein yes no 2 0.00089236 54.7 By MS/MS 1 1.2332 1.3243 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2332 1.3243 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6254100 2972700 3281400 0 0 0 0 0 0 6254100 2972700 3281400 0 0 0 0 0 0 0 0 0 36701 3325 38572 194378 197608 197608 1 VLQSFTVDSSK VKIAGPGLGSGVRARVLQSFTVDSSKAGLA VRARVLQSFTVDSSKAGLAPLEVRVLGPRG R V L S K A 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 3 1 0 0 2 0 0 11 0 1209.6241 O75369;E7EN95 O75369 1439 1449 FLNB Filamin-B yes no 2 2.2631E-12 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1 0.79722 0.79108 35.58 6 Median 0.95572 0.91919 NaN 1 1 Median 1.0814 0.96323 3.7145 2 2 Median 0.61734 0.68083 NaN 1 1 Median 0.53194 0.496 34.892 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 115600000 62746000 52853000 22291000 11733000 10558000 76623000 40577000 36046000 14180000 8953800 5225900 2505300 1482000 1023400 0 0 0 0 0 0 36702 1664 38573 194379;194380;194381;194382;194383;194384;194385;194386 197609;197610;197611;197612;197613;197614;197615 197612 7 VLQSPATTVVR FGRDPADGRMRLSRKVLQSPATTVVRTLND LSRKVLQSPATTVVRTLNDRSSIVMGEPIS K V L V R T 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 1 2 0 0 3 0 0 11 0 1169.6768 Q8TCS8 Q8TCS8 751 761 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 0.00014653 83.948 By MS/MS By MS/MS By MS/MS 1 1 2 1.1075 0.96359 22.547 4 Median 0.77282 0.76511 NaN 1 0 Median 1.0803 0.94891 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3055 1.138 21.356 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9669200 4453100 5216100 1823400 804390 1019000 1508400 722510 785910 0 0 0 6337400 2926200 3411200 0 0 0 0 0 0 36703 3467 38574 194387;194388;194389;194390 197616;197617;197618;197619 197618 4 VLQTEQAVK SSTVEYLKKHGIDVRVLQTEQAVKEYNALV HGIDVRVLQTEQAVKEYNALVAQGVRVGGV R V L V K E 1 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1014.571 E9PNP3;E9PR47;Q9H7C9;E9PIQ4 E9PNP3 113 121 AAMDC Mth938 domain-containing protein yes no 2 0.0022552 73.26 By matching By MS/MS By matching 1 1 1 1.2319 1.0235 12.265 3 Median 0.97811 0.90196 NaN 1 0 Median 1.2319 1.0235 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3704 1.1527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6265100 3030200 3234900 2941900 1482000 1459900 3192000 1484600 1707300 0 0 0 131250 63622 67629 0 0 0 0 0 0 36704 974 38575 194391;194392;194393 197620;197621 197621 2 VLQTEQAVKEYNALVAQGVR SSTVEYLKKHGIDVRVLQTEQAVKEYNALV QAVKEYNALVAQGVRVGGVFHSTC______ R V L V R V 3 1 1 0 0 3 2 1 0 0 2 1 0 0 0 0 1 0 1 4 0 0 20 1 2215.1961 E9PNP3;E9PR47;Q9H7C9;E9PIQ4 E9PNP3 113 132 AAMDC Mth938 domain-containing protein yes no 3 5.5402E-06 47.09 By MS/MS 1 0.93772 0.91952 NaN 1 Median 0.93772 0.91952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1420800 664370 756420 1420800 664370 756420 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36705 974 38576 194394 197622 197622 1 VLQVQAQVQSQTQPR PEALEAQVLPRFQPRVLQVQAQVQSQTQPR VLQVQAQVQSQTQPRIPSTDTQVQPKLQKQ R V L P R I 1 1 0 0 0 6 0 0 0 0 1 0 0 0 1 1 1 0 0 3 0 0 15 0 1708.922 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3;A0A494C0L7 H0Y5D5 237 251 CIZ1 Cip1-interacting zinc finger protein yes no 2;3 2.6119E-40 169.52 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 3 0.99367 0.92751 35.347 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82103 0.90266 1.3145 2 1 Median 0.96559 0.82088 58.066 3 2 Median 1.0226 1.0602 NaN 1 0 Median 1.4697 1.1968 33.52 2 1 Median 54792000 27504000 27288000 0 0 0 0 0 0 31164000 17735000 13429000 14122000 5623600 8498400 6196100 2953000 3243100 3310200 1193200 2117100 36706 1028 38577 194395;194396;194397;194398;194399;194400;194401;194402;194403 197623;197624;197625;197626;197627;197628;197629;197630;197631;197632;197633;197634 197630 12 VLQYHKPVQASYFETLR IGRKREWFKIEDAIKVLQYHKPVQASYFET QYHKPVQASYFETLRQGYSANNGTPVVATT K V L L R Q 1 1 0 0 0 2 1 0 1 0 2 1 0 1 1 1 1 0 2 2 0 0 17 1 2078.0949 A0A1W2PQS6;O95989 A0A1W2PQS6 247 263 NUDT3 Diphosphoinositol polyphosphate phosphohydrolase 1 yes no 3 1.3678E-06 84.559 By MS/MS 2 0.92001 0.93259 28.504 2 Median 0.92001 0.93259 28.504 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35064000 16785000 18279000 35064000 16785000 18279000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36707 345 38578 194404;194405 197635;197636;197637 197636 2 VLQYYSAATEHDR WQLNLQGINESTIPKVLQYYSAATEHDRSW PKVLQYYSAATEHDRSWYKAWHAWAVMNFE K V L D R S 2 1 0 1 0 1 1 0 1 0 1 0 0 0 0 1 1 0 2 1 0 0 13 0 1551.7318 P42345 P42345 1772 1784 MTOR Serine/threonine-protein kinase mTOR yes yes 3 0.00045444 66.706 By MS/MS 1 1.1769 0.94971 NaN 1 Median NaN NaN NaN 0 0 Median 1.1769 0.94971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12822000 5719900 7102200 0 0 0 12822000 5719900 7102200 0 0 0 0 0 0 0 0 0 0 0 0 36708 2310 38579 194406 197638 197638 1 VLRDNIQGITK GGKGLGKGGAKRHRKVLRDNIQGITKPAIR RHRKVLRDNIQGITKPAIRRLARRGGVKRI K V L T K P 0 1 1 1 0 1 0 1 0 2 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1255.7248 P62805 P62805 22 32 HIST1H4A Histone H4 yes yes 2;3 5.4315E-05 91.937 By matching By MS/MS By MS/MS 1 3 3 1.0326 1.0592 21.99 6 Median 1.0443 1.1623 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0211 1.1584 24.945 3 0 Median 1.0551 0.84462 19.356 2 0 Median 25290000 11402000 13887000 735940 299440 436500 0 0 0 0 0 0 0 0 0 15846000 7792600 8053500 8707800 3310500 5397300 36709 2597 38580 194407;194408;194409;194410;194411;194412;194413 197639;197640;197641;197642;197643 197642 5 VLRDNIQGITKPAIR GGKGLGKGGAKRHRKVLRDNIQGITKPAIR VLRDNIQGITKPAIRRLARRGGVKRISGLI K V L I R R 1 2 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 0 0 1 0 0 15 2 1692.9999 P62805 P62805 22 36 HIST1H4A Histone H4 yes yes 2;3;4 4.4356E-10 153.81 By MS/MS By matching By MS/MS By MS/MS 2 2 11 7 0.87729 1.018 17.843 22 Median 0.57249 0.64615 11.502 2 0 Median 1.0532 1.0861 0.80758 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85824 1.0141 5.3076 11 0 Median 1.1572 1.0219 20.677 7 0 Median 607840000 308450000 299390000 7891200 4923900 2967200 13013000 5976900 7035900 0 0 0 0 0 0 516010000 264070000 251940000 70926000 33483000 37443000 36710 2597 38581 194414;194415;194416;194417;194418;194419;194420;194421;194422;194423;194424;194425;194426;194427;194428;194429;194430;194431;194432;194433;194434;194435 197644;197645;197646;197647;197648;197649;197650;197651;197652;197653;197654;197655;197656;197657;197658;197659;197660;197661;197662;197663;197664;197665;197666;197667;197668;197669;197670;197671 197669 28 VLREEISLAK MFNLKDPKNQGLFHRVLREEISLAKLVRLK GLFHRVLREEISLAKLVRLKPEELVSKELS R V L A K L 1 1 0 0 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 1 1156.6816 Q9BTC0 Q9BTC0 744 753 DIDO1 Death-inducer obliterator 1 yes yes 2 0.013033 65.224 By MS/MS By matching 2 1 0.86176 1.033 40.664 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58887 0.69361 56.329 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69078 0.60188 NaN 1 0 Median 17526000 10011000 7515200 0 0 0 0 0 0 15817000 8987100 6829500 0 0 0 0 0 0 1709400 1023700 685700 36711 3824 38582 194436;194437;194438 197672;197673 197673 2 VLRPQVTAVAQQNQGEVPEPQDMK KFRRQHEQLRAVIVRVLRPQVTAVAQQNQG AQQNQGEVPEPQDMKVAEVLFDAADANAIE R V L M K V 2 1 1 1 0 5 2 1 0 0 1 1 1 0 3 0 1 0 0 4 0 0 24 1 2661.3544 Q14204 Q14204 483 506 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3;4 1.0897E-35 122.41 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 0.67897 0.66657 14.025 11 Median 0.61431 0.6479 14.273 4 0 Median 0.75877 0.69709 20.822 3 1 Median 0.59192 0.68801 4.5131 2 0 Median 0.74317 0.70473 10.247 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 325910000 194890000 131020000 172820000 105550000 67266000 47085000 24517000 22568000 95821000 59309000 36512000 10186000 5510700 4675300 0 0 0 0 0 0 36712 2865 38583;38584 194439;194440;194441;194442;194443;194444;194445;194446;194447;194448;194449 197674;197675;197676;197677;197678;197679;197680;197681;197682;197683;197684;197685;197686;197687;197688;197689;197690;197691;197692;197693;197694;197695;197696;197697 197690 1565 24 VLSAMIR FNKRILCLFRPQSGRVLSAMIRGAADGSRF LFRPQSGRVLSAMIRGAADGSRFQVWDYEE R V L I R G 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 7 0 788.45784 H0Y8X4;O43598 H0Y8X4 195 201 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 2 0.012521 88.734 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10276000 0 10276000 0 0 0 10276000 0 10276000 0 0 0 0 0 0 0 0 0 0 0 0 36713 1164 38585 194450 197698 197698 1 VLSAPPHFHFGQTNR FKALIAAQYSGAQVRVLSAPPHFHFGQTNR VLSAPPHFHFGQTNRTPEFLRKFPAGKVPA R V L N R T 1 1 1 0 0 1 0 1 2 0 1 0 0 2 2 1 1 0 0 1 0 0 15 0 1706.8641 P26641 P26641 31 45 EEF1G Elongation factor 1-gamma yes yes 2;3;4 7.5983E-102 267.43 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 6 8 15 9 8 0.92918 0.84509 25.136 52 Median 0.85707 0.82751 6.6404 8 0 Median 0.85473 0.72679 19.221 6 1 Median 0.99723 0.98181 20.149 8 1 Median 0.96806 0.81543 13.798 14 1 Median 0.97793 1.0377 28.586 9 1 Median 0.84754 0.72604 12.166 7 0 Median 4812500000 2392800000 2419700000 194970000 98661000 96312000 31248000 17416000 13832000 875280000 419870000 455410000 3556000000 1781000000 1775000000 73421000 34240000 39181000 81659000 41656000 40003000 36714 2149 38586 194451;194452;194453;194454;194455;194456;194457;194458;194459;194460;194461;194462;194463;194464;194465;194466;194467;194468;194469;194470;194471;194472;194473;194474;194475;194476;194477;194478;194479;194480;194481;194482;194483;194484;194485;194486;194487;194488;194489;194490;194491;194492;194493;194494;194495;194496;194497;194498;194499;194500;194501;194502;194503;194504 197699;197700;197701;197702;197703;197704;197705;197706;197707;197708;197709;197710;197711;197712;197713;197714;197715;197716;197717;197718;197719;197720;197721;197722;197723;197724;197725;197726;197727;197728;197729;197730;197731;197732;197733;197734;197735;197736;197737;197738;197739;197740;197741;197742;197743;197744;197745;197746;197747;197748;197749;197750;197751;197752;197753;197754;197755;197756;197757;197758;197759;197760;197761;197762;197763;197764;197765;197766;197767;197768;197769;197770;197771;197772;197773;197774;197775;197776;197777;197778;197779;197780;197781;197782;197783;197784;197785;197786;197787;197788;197789;197790;197791;197792;197793;197794;197795 197772 97 VLSASEVAALSSPASSAPHSGGK AGSSQGASSGLSVVKVLSASEVAALSSPAS ALSSPASSAPHSGGKTGMEENRRLEHQKKQ K V L G K T 5 0 0 0 0 0 1 2 1 0 2 1 0 0 2 7 0 0 0 2 0 0 23 0 2109.0702 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4 Q9HCK8 421 443 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 3 5.6794E-20 91.128 By MS/MS 2 0.71771 0.77975 29.005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71771 0.77975 29.005 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21739000 12400000 9338500 0 0 0 0 0 0 21739000 12400000 9338500 0 0 0 0 0 0 0 0 0 36715 4030 38587 194505;194506 197796;197797 197797 2 VLSEAAISASLEK EELCNSCEMENEVLKVLSEAAISASLEKFE LKVLSEAAISASLEKFEIPVKIRLSPEPWT K V L E K F 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 3 0 0 0 1 0 0 13 0 1316.7187 O95573 O95573 661 673 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.00069644 79.693 By MS/MS 1 1.5389 1.5046 NaN 1 Median 1.5389 1.5046 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2573300 960080 1613200 2573300 960080 1613200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36716 1780 38588 194507 197798 197798 1 VLSEDAIR VDASKSIEAVHEDIRVLSEDAIRTATEKPL AVHEDIRVLSEDAIRTATEKPLGELWK___ R V L I R T 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 901.4869 P23919;H7C312 P23919 193 200 DTYMK Thymidylate kinase yes no 2 0.0087245 79.469 By MS/MS By MS/MS 1 1 1.151 1.0311 0.091838 2 Median 1.0856 1.0305 NaN 1 0 Median 1.2203 1.0318 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20934000 10043000 10892000 15329000 7382700 7945800 5605900 2659800 2946000 0 0 0 0 0 0 0 0 0 0 0 0 36717 2120 38589 194508;194509 197799;197800;197801 197801 3 VLSEDEEDVDFDIIHNANDTFTVK AGEGDVSVGIKCDARVLSEDEEDVDFDIIH DFDIIHNANDTFTVKYVPPAAGRYTIKVLF R V L V K Y 1 0 2 5 0 0 3 0 1 2 1 1 0 2 0 1 2 0 0 3 0 0 24 0 2764.2715 O75369;E7EN95 O75369 787 810 FLNB Filamin-B yes no 3 0.0095274 19.044 By MS/MS 1 1.0855 1.0434 NaN 1 Median 1.0855 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4611000 2175500 2435500 4611000 2175500 2435500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36718 1664 38590 194510 197802 197802 1 VLSEKDVDPVR LQEWILETDGVSLMRVLSEKDVDPVRTTSN SLMRVLSEKDVDPVRTTSNDIVEIFTVLGI R V L V R T 0 1 0 2 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 3 0 0 11 1 1255.6772 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1346 1356 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.0020041 59.198 By MS/MS 1 0.82009 0.93044 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82009 0.93044 NaN 1 1 Median NaN NaN NaN 0 0 Median 9636800 4233400 5403400 0 0 0 0 0 0 0 0 0 0 0 0 9636800 4233400 5403400 0 0 0 36719 486 38591 194511 197803 197803 1 VLSEPNPR GDPASYPSVVSTLSRVLSEPNPRPVFGICL VVSTLSRVLSEPNPRPVFGICLGHQLLALA R V L P R P 0 1 1 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 8 0 910.48723 F8VPD4;P27708 F8VPD4 239 246 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.018519 47.849 By MS/MS 1 0.60697 0.50741 NaN 1 Median NaN NaN NaN 0 0 Median 0.60697 0.50741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1623600 1026900 596690 0 0 0 1623600 1026900 596690 0 0 0 0 0 0 0 0 0 0 0 0 36720 1057 38592 194512 197804 197804 1 VLSFIPPDGNFR SFHPCIRFKRWESERVLSFIPPDGNFRLIS SERVLSFIPPDGNFRLISYRVSSQNLVAIP R V L F R L 0 1 1 1 0 0 0 1 0 1 1 0 0 2 2 1 0 0 0 1 0 0 12 0 1360.7139 Q9Y2T2 Q9Y2T2 247 258 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.0019384 78.934 By MS/MS 2 0.69668 0.69334 2.1786 2 Median 0.69668 0.69334 2.1786 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7324800 4373100 2951700 7324800 4373100 2951700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36721 4391 38593 194513;194514 197805;197806 197806 2 VLSFPGGSLLLAGR LLFHEVLEYMSRIDRVLSFPGGSLLLAGRS RVLSFPGGSLLLAGRSGVGRRTITSLVSHM R V L G R S 1 1 0 0 0 0 0 3 0 0 4 0 0 1 1 2 0 0 0 1 0 0 14 0 1385.8031 Q8NCM8 Q8NCM8 2643 2656 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.00031531 74.841 By MS/MS By matching By matching 2 2 1 0.83089 0.78702 32.018 5 Median 0.75214 0.74346 8.0526 2 1 Median 1.4705 1.2519 25.219 2 0 Median NaN NaN NaN 0 0 Median 0.83089 0.72018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14521000 8140100 6381100 12075000 7137400 4937800 2395200 974660 1420500 0 0 0 50786 28014 22772 0 0 0 0 0 0 36722 3418 38594 194515;194516;194517;194518;194519 197807;197808 197807 2 VLSGEFQIVNPHLLK NESIEPYTSNIYTRRVLSGEFQIVNPHLLK VLSGEFQIVNPHLLKDLTERGLWHEEMKNQ R V L L K D 0 0 1 0 0 1 1 1 1 1 3 1 0 1 1 1 0 0 0 2 0 0 15 0 1692.9563 P23921;E9PL69 P23921 629 643 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2;3 0.00017261 76.143 By MS/MS By MS/MS 2 2 1.123 1.0033 9.6224 4 Linear 1.0193 0.94048 4.3922 2 0 Median 1.0502 0.92509 15.992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29314000 13171000 16143000 16256000 8021400 8234700 13058000 5149600 7908300 0 0 0 0 0 0 0 0 0 0 0 0 36723 2121 38595 194520;194521;194522;194523 197809;197810;197811;197812 197811 4 VLSGISFEVPAGK VAFDNVHFEYIEGQKVLSGISFEVPAGKKV QKVLSGISFEVPAGKKVAIVGGSGSGKSTI K V L G K K 1 0 0 0 0 0 1 2 0 1 1 1 0 1 1 2 0 0 0 2 0 0 13 0 1302.7184 O75027;A0A590UJS8;B4DGL8;A0A2R8Y473;A0A087WW65 O75027 487 499 ABCB7 ATP-binding cassette sub-family B member 7, mitochondrial yes no 2 0.026015 27.742 By matching By MS/MS By matching 1 2 1 0.97865 1.0277 20.21 4 Median 1.0359 1.036 NaN 1 0 Median 1.033 0.90817 32.729 2 0 Median 0.92458 1.0195 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15713000 7378100 8334800 7920100 3902600 4017500 6707900 2918900 3789000 1084900 556590 528290 0 0 0 0 0 0 0 0 0 36724 1642 38596 194524;194525;194526;194527 197813 197813 1 VLSGLGGAAASSHR AESQGRSEILMSLQKVLSGLGGAAASSHRD KVLSGLGGAAASSHRDIYKNARSLLTDRSM K V L H R D 3 1 0 0 0 0 0 3 1 0 2 0 0 0 0 3 0 0 0 1 0 0 14 0 1281.6789 Q9P2D3 Q9P2D3 163 176 HEATR5B HEAT repeat-containing protein 5B yes yes 3 0.004331 44.457 By MS/MS 1 1.0245 0.84972 NaN 1 Median NaN NaN NaN 0 0 Median 1.0245 0.84972 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1348700 706410 642260 0 0 0 1348700 706410 642260 0 0 0 0 0 0 0 0 0 0 0 0 36725 4221 38597 194528 197814 197814 1 VLSGTIHAGQPVK MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL GRVLSGTIHAGQPVKVLGENYTLEDEEDSQ R V L V K V 1 0 0 0 0 1 0 2 1 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1305.7405 Q15029 Q15029 496 508 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 6.2643E-07 123.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 4 8 6 1.0126 0.94984 14.018 28 Median 1.0413 1.0282 6.1543 2 0 Median 1.1802 0.99994 5.9748 4 0 Linear 0.85499 0.92637 9.6156 5 0 Median 1.1088 0.96556 7.4502 4 0 Median 0.93009 0.94729 22.145 8 1 Median 1.0884 0.89469 15.231 5 0 Median 191820000 93606000 98215000 6469200 3009100 3460100 46308000 21722000 24586000 26484000 13969000 12515000 22974000 10498000 12476000 64102000 31249000 32853000 25484000 13159000 12325000 36726 2917 38598 194529;194530;194531;194532;194533;194534;194535;194536;194537;194538;194539;194540;194541;194542;194543;194544;194545;194546;194547;194548;194549;194550;194551;194552;194553;194554;194555;194556;194557 197815;197816;197817;197818;197819;197820;197821;197822;197823;197824;197825;197826;197827;197828;197829;197830;197831;197832;197833;197834;197835;197836;197837;197838;197839;197840;197841;197842;197843;197844;197845;197846;197847;197848;197849;197850;197851;197852;197853 197849 38 VLSIGDGIAR ILGADTSVDLEETGRVLSIGDGIARVHGLR EETGRVLSIGDGIARVHGLRNVQAEEMVEF R V L A R V 1 1 0 1 0 0 0 2 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 999.57129 P25705;K7EK77;K7ERX7;K7EJP1;K7EQH4 P25705 74 83 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 4.8634E-05 136.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 3 1 3 1.4323 1.2427 29.124 18 Median 1.0292 0.97713 4.1586 5 0 Median 1.5229 1.3291 16.074 6 0 Median 1.8602 1.867 30.971 3 2 Median 1.6231 1.3923 NaN 1 0 Median 1.7754 1.7389 52.463 3 1 Median NaN NaN NaN 0 0 Median 326540000 142820000 183730000 162260000 76849000 85407000 127340000 51509000 75833000 21845000 8714500 13130000 2953500 1080900 1872600 12144000 4661000 7483400 0 0 0 36727 2135 38599 194558;194559;194560;194561;194562;194563;194564;194565;194566;194567;194568;194569;194570;194571;194572;194573;194574;194575 197854;197855;197856;197857;197858;197859;197860;197861;197862;197863;197864;197865;197866;197867;197868;197869;197870;197871;197872;197873;197874;197875;197876 197856 23 VLSIGLPVAR PSESTWKLAVSSLLRVLSIGLPVARQHASS SSLLRVLSIGLPVARQHASSGKFDSMWPEL R V L A R Q 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 2 0 0 10 0 1023.6441 A0A286YFF8;Q7Z3U7 A0A286YFF8 1470 1479 MON2 Protein MON2 homolog yes no 2 0.00041485 96.253 By MS/MS By matching By matching By matching 1 1 1 4 1.1371 0.9374 23.088 7 Median 0.92644 0.87138 NaN 1 0 Median 1.0816 0.90843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5888 1.6283 NaN 1 0 Median 1.1596 0.95829 11.981 4 0 Median 12049000 5743700 6305600 8936700 4404300 4532400 1801100 767090 1034000 0 0 0 0 0 0 649980 258590 391390 661520 313690 347830 36728 353 38600 194576;194577;194578;194579;194580;194581;194582 197877;197878 197877 2 VLSILISR NDSPLNPLLASFFSKVLSILISRKPEQIVD LASFFSKVLSILISRKPEQIVDFLKKKHDF K V L S R K 0 1 0 0 0 0 0 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 8 0 899.5804 H7BXH2;E9PKF6;Q5H9R7;E9PQP7;E9PK08;E9PNN8 H7BXH2 127 134 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 yes no 2 0.014305 51.346 By MS/MS By matching 1 3 1.181 1.0359 14.378 4 Median 1.3347 1.3162 NaN 1 0 Median 1.1648 1.0018 6.1596 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5267700 2264900 3002700 2179500 866910 1312600 3088100 1398000 1690100 0 0 0 0 0 0 0 0 0 0 0 0 36729 946 38601 194583;194584;194585;194586 197879 197879 1 VLSIQSHVIR ______________________________ EEECRVLSIQSHVIRGYVGNRAATFPLQVL R V L I R G 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1150.6822 O00764;A8MV33 O00764 7 16 PDXK Pyridoxal kinase yes no 2 3.5776E-07 130.75 By MS/MS By MS/MS 3 1 1.1936 1.058 28.809 4 Median 1.1676 1.0899 32.404 3 3 Median 1.2202 1.0148 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 149250000 68897000 80354000 138260000 63993000 74270000 10989000 4903900 6084600 0 0 0 0 0 0 0 0 0 0 0 0 36730 1478 38602 194587;194588;194589;194590 197880;197881;197882;197883 197881 4 VLSIWEER VSSETDESCKKHLGRVLSIWEERSVYENDV CKKHLGRVLSIWEERSVYENDVLEQLKQAL R V L E R S 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 8 0 1030.5447 Q96P16;A0A0C4DGQ6 Q96P16 107 114 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A yes no 2 0.0054254 75.854 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.1493 1.0668 7.4636 5 Median 1.1501 1.1161 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95613 0.94617 NaN 1 0 Median 1.1493 0.96373 NaN 1 0 Median 1.0445 1.0884 NaN 1 0 Median 1.2386 1.0668 NaN 1 0 Median 12500000 5861600 6638600 1328000 468110 859900 0 0 0 4475700 2216900 2258800 851230 411930 439300 5007800 2402400 2605500 837430 362310 475130 36731 3709 38603 194591;194592;194593;194594;194595 197884;197885 197885 2 VLSKPPEGVVSEVEMLSSQER GEDPTQGADLSPDEKVLSKPPEGVVSEVEM EGVVSEVEMLSSQERMKVQGSPLKKLFTST K V L E R M 0 1 0 0 0 1 4 1 0 0 2 1 1 0 2 4 0 0 0 4 0 0 21 1 2299.173 Q02952 Q02952 488 508 AKAP12 A-kinase anchor protein 12 yes yes 3 6.8621E-23 111.66 By MS/MS By matching 2 1 0.82218 0.78744 22.225 3 Median 0.7994 0.82019 31.254 2 1 Median 0.82218 0.78744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24330000 12899000 11431000 22177000 11725000 10452000 2153300 1174300 979000 0 0 0 0 0 0 0 0 0 0 0 0 36732 2705 38604 194596;194597;194598 197886;197887;197888 197887 3 VLSLDTNITNQVNK LLNNPALEFIKYVCKVLSLDTNITNQVNKL KVLSLDTNITNQVNKLNRDLLRLVDVGEFS K V L N K L 0 0 3 1 0 1 0 0 0 1 2 1 0 0 0 1 2 0 0 2 0 0 14 0 1557.8362 Q07864;F5H1D6 Q07864 2111 2124 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.00027152 74.841 By MS/MS 1 0.84071 0.93629 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84071 0.93629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5233600 2652900 2580700 0 0 0 0 0 0 5233600 2652900 2580700 0 0 0 0 0 0 0 0 0 36733 1020 38605 194599 197889;197890 197889 2 VLSLETSVNELNSQLNESKEK QVQEQKAHLRAAQDRVLSLETSVNELNSQL SVNELNSQLNESKEKVSQLDIQIKAKTELL R V L E K V 0 0 3 0 0 1 4 0 0 0 4 2 0 0 0 4 1 0 0 2 0 0 21 1 2360.2071 Q15075 Q15075 616 636 EEA1 Early endosome antigen 1 yes yes 3 2.8411E-14 92.31 By MS/MS By matching By matching 1 1 1 0.73764 0.78933 10.946 3 Median 0.84374 0.82089 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62484 0.78933 NaN 1 0 Median 0.73764 0.66798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21303000 11462000 9841300 8206800 4179100 4027600 0 0 0 12860000 7153400 5706300 236930 129570 107360 0 0 0 0 0 0 36734 2926 38606 194600;194601;194602 197891;197892 197891 2 VLSLVDDPR LWLTKTKLIEGLPEKVLSLVDDPRNHIENQ EGLPEKVLSLVDDPRNHIENQDECVLNVIS K V L P R N 0 1 0 2 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 9 0 1012.5553 Q9BZE1;S4R369 Q9BZE1 136 144 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.006443 54.549 By MS/MS 1 0.74625 0.81105 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74625 0.81105 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7879000 3977100 3901900 0 0 0 0 0 0 7879000 3977100 3901900 0 0 0 0 0 0 0 0 0 36735 3897 38607 194603 197893 197893 1 VLSMAPGLTSVEIIPFR PETKKDLYEPTHGGKVLSMAPGLTSVEIIP SMAPGLTSVEIIPFRVAAYNKAKKAMDFYD K V L F R V 1 1 0 0 0 0 1 1 0 2 2 0 1 1 2 2 1 0 0 2 0 0 17 0 1829.0121 O95340 O95340 535 551 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 2.0981E-08 97.911 By matching By MS/MS By MS/MS 1 1 1 0.99835 0.96666 19.411 3 Median 0.99835 0.96666 NaN 1 0 Median 0.93636 0.81143 NaN 1 0 Median 1.1418 1.1956 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9299500 4607800 4691700 5686000 2819300 2866700 2433200 1224800 1208400 1180300 563720 616590 0 0 0 0 0 0 0 0 0 36736 1765 38608 194604;194605;194606 197894;197895;197896;197897 197896 4 VLSNGVQFSR HGGVRGFDKVLWTPRVLSNGVQFSRISPDG LWTPRVLSNGVQFSRISPDGEEGYPGELKV R V L S R I 0 1 1 0 0 1 0 1 0 0 1 0 0 1 0 2 0 0 0 2 0 0 10 0 1105.588 Q96C23;H7C320;H7C1B5 Q96C23 122 131 GALM Aldose 1-epimerase yes no 2 0.00034654 84.615 By MS/MS By MS/MS 1 1 1.1685 1.0806 3.926 2 Median 1.0608 1.051 NaN 1 0 Median 1.2871 1.111 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8701600 4501200 4200300 5714200 3074700 2639500 2987300 1426500 1560800 0 0 0 0 0 0 0 0 0 0 0 0 36737 3614 38609 194607;194608 197898;197899;197900 197899 3 VLSNRPIMFR NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL EPVQKVLSNRPIMFRGEVRLNVEEKKTRAA K V L F R G 0 2 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 10 1 1231.6859 Q13283 Q13283 394 403 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 0.0001061 124.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 4 6 1 1 1.0145 1.0006 22.838 23 Median 0.97841 1.0102 28.615 6 0 Median 0.97217 0.88293 37.998 5 1 Median 0.97951 1.0365 16.141 4 0 Median 1.115 1.0251 5.3114 6 0 Median 0.92913 0.99992 NaN 1 1 Median 0.94484 0.83534 NaN 1 0 Median 387270000 189640000 197620000 206410000 103020000 103390000 97030000 47337000 49693000 43555000 20505000 23050000 32901000 15427000 17474000 5415000 2412400 3002600 1960300 947340 1013000 36738 2803 38610 194609;194610;194611;194612;194613;194614;194615;194616;194617;194618;194619;194620;194621;194622;194623;194624;194625;194626;194627;194628;194629;194630;194631 197901;197902;197903;197904;197905;197906;197907;197908;197909;197910;197911;197912;197913;197914;197915;197916;197917;197918;197919;197920;197921;197922;197923;197924 197907 24 VLSPAGPEAQFELR FALVRKDAGGRQVQRVLSPAGPEAQFELRG RVLSPAGPEAQFELRGVSAVDSGNYSCVYV R V L L R G 2 1 0 0 0 1 2 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 14 0 1512.7936 CON__Q2KJF1 CON__Q2KJF1 357 370 yes yes 2 6.5856E-05 90.653 By MS/MS 1 0.13462 0.12898 NaN 1 Median 0.13462 0.12898 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8056300 7268000 788210 8056300 7268000 788210 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 36739 773 38611 194632 197925 197925 1 VLSPEAVR ATLANGGFCPITGERVLSPEAVRNTLSLMH CPITGERVLSPEAVRNTLSLMHSCGMYDFS R V L V R N 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 8 0 869.49707 O94925;C9JIJ6;B8ZZA8 O94925 447 454 GLS Glutaminase kidney isoform, mitochondrial no no 2 0.0035475 89.55 By matching By MS/MS 1 1 1.2258 1.1232 1.0076 2 Median 1.1359 1.1153 NaN 1 0 Median 1.3228 1.1313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3961500 1872000 2089500 914140 537240 376900 3047400 1334800 1712600 0 0 0 0 0 0 0 0 0 0 0 0 36740 1738;645 38612 194633;194634 197926;197927 197926 2 VLSPEELEDR VLIPGLVEGSTKRKRVLSPEELEDRQKKRQ TKRKRVLSPEELEDRQKKRQEAAAKRRRLI R V L D R Q 0 1 0 1 0 0 3 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 10 0 1185.5877 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A494C179 Q86WJ1 634 643 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 2 0.00035174 94.692 By MS/MS By MS/MS 1 1 0.86657 0.82237 6.4576 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7419 0.78566 NaN 1 0 Median 1.0122 0.86079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23703000 13489000 10214000 0 0 0 0 0 0 20491000 11885000 8605400 3212600 1603900 1608700 0 0 0 0 0 0 36741 3293 38613 194635;194636 197928;197929;197930 197929 3 VLSPFAPDYIQR GQIRVFNHSRDRWLRVLSPFAPDYIQRSLF WLRVLSPFAPDYIQRSLFHRKGINEESCFS R V L Q R S 1 1 0 1 0 1 0 0 0 1 1 0 0 1 2 1 0 0 1 1 0 0 12 0 1404.7402 H0YMN5;Q9ULG1 H0YMN5 863 874 INO80 DNA helicase INO80 yes no 2 0.023739 49.35 By MS/MS 1 1.0586 1.1632 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0586 1.1632 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6187700 2659200 3528500 0 0 0 0 0 0 6187700 2659200 3528500 0 0 0 0 0 0 0 0 0 36742 1199 38614 194637 197931 197931 1 VLSPGVSHR DCGSLNGTQILRPPKVLSPGVSHRLRDQEL ILRPPKVLSPGVSHRLRDQELILFADLLCQ K V L H R L 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 2 0 0 0 2 0 0 9 0 950.52976 Q14676;A2AB05;A2AB07 Q14676 106 114 MDC1 Mediator of DNA damage checkpoint protein 1 yes no 2 0.039605 33.797 By MS/MS 1 0.93529 1.0427 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93529 1.0427 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 750240 380670 369570 0 0 0 0 0 0 750240 380670 369570 0 0 0 0 0 0 0 0 0 36743 2887 38615 194638 197932 197932 1 VLSQQAASVVK VKAGGSRQDCHEKIRVLSQQAASVVKQEGG EKIRVLSQQAASVVKQEGGDNDLIERIQVD R V L V K Q 2 0 0 0 0 2 0 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 11 0 1128.6503 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6 A0A1B0GWJ0 405 415 ADSL Adenylosuccinate lyase yes no 2 0.00018838 109.29 By MS/MS By MS/MS By matching By MS/MS 3 2 2 1 1.2657 1.084 9.967 8 Median 1.2567 1.1678 14.252 3 0 Median 1.2901 1.084 0.56984 2 0 Median 0.96782 1.0588 0.069285 2 0 Median 1.3722 1.1913 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36737000 16878000 19859000 16229000 7594900 8634400 15084000 6532800 8551500 4669600 2436000 2233500 753590 314070 439520 0 0 0 0 0 0 36744 200 38616 194639;194640;194641;194642;194643;194644;194645;194646 197933;197934;197935;197936;197937;197938 197935 6 VLSRPNAQELPSMYQR PTGSKDLQMVNISLRVLSRPNAQELPSMYQ LSRPNAQELPSMYQRLGLDYEERVLPSIVN R V L Q R L 1 2 1 0 0 2 1 0 0 0 2 0 1 0 2 2 0 0 1 1 0 0 16 1 1887.9625 J3KPX7;Q99623;F5GY37;F5GWA7;F5H3X6 J3KPX7 108 123 PHB2 Prohibitin-2 yes no 2;3 8.2027E-72 246.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 3 2 3 1.0404 0.93613 26.429 14 Median 0.73453 0.79076 0.21358 3 0 Median 1.0713 0.9861 4.3123 3 0 Median 0.69533 0.72575 42.978 3 1 Median 1.2213 1.1397 2.5664 2 0 Median NaN NaN NaN 0 0 Median 1.0253 0.90173 38.806 3 0 Median 1101200000 601740000 499480000 876710000 493970000 382740000 131160000 61375000 69781000 64939000 33306000 31633000 22357000 10052000 12306000 0 0 0 6060100 3041600 3018500 36745 1313 38617;38618 194647;194648;194649;194650;194651;194652;194653;194654;194655;194656;194657;194658;194659;194660 197939;197940;197941;197942;197943;197944;197945;197946;197947;197948;197949;197950;197951;197952;197953;197954;197955;197956;197957;197958;197959;197960 197949 436 22 VLSSAASLPGSELPSSRPEGSQGGELSR AARGLANPEPAPEPKVLSSAASLPGSELPS PSSRPEGSQGGELSRCSSMSSLSREVSQHF K V L S R C 2 2 0 0 0 1 3 4 0 0 4 0 0 0 3 8 0 0 0 1 0 0 28 1 2754.3784 O15027;A0A0C4DH09;Q8N9G1 O15027 2265 2292 SEC16A Protein transport protein Sec16A yes no 3 4.7565E-29 81.341 By MS/MS By matching 1 2 0.54271 0.55947 11.148 3 Median 0.54271 0.58038 NaN 1 0 Median 0.52766 0.51334 12.169 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25667000 16151000 9516000 20246000 12769000 7476700 5421200 3381900 2039300 0 0 0 0 0 0 0 0 0 0 0 0 36746 1513 38619 194661;194662;194663 197961;197962 197961 2 VLSSIEQK VAYKNVVGGQRAAWRVLSSIEQKSNEEGSE GQRAAWRVLSSIEQKSNEEGSEEKGPEVRE R V L Q K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 8 0 902.5073 P31947 P31947 61 68 SFN 14-3-3 protein sigma yes yes 2 0.0023555 114.78 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 1 2 2 1.3349 1.1676 26.954 12 Median 1.7313 1.611 39.528 4 0 Linear 1.4428 1.2159 19.963 3 0 Median 1.3078 1.2267 NaN 1 0 Median 1.1578 0.97253 8.4339 2 0 Median NaN NaN NaN 0 0 Median 1.3735 1.1515 1.4115 2 0 Median 186170000 77948000 108220000 101860000 40125000 61732000 34476000 15849000 18627000 39370000 17652000 21718000 6876400 2875800 4000600 0 0 0 3587100 1446700 2140400 36747 2211 38620 194664;194665;194666;194667;194668;194669;194670;194671;194672;194673;194674;194675 197963;197964;197965;197966;197967;197968;197969;197970;197971;197972;197973;197974 197969 12 VLSSLKPAAPSPATAATTAAAASTAASSTASSASK SPPPPPPLPEPPVLKVLSSLKPAAPSPATA AASTAASSTASSASKTASPLEHILQTLFGK K V L S K T 13 0 0 0 0 0 0 0 0 0 2 2 0 0 3 9 5 0 0 1 0 0 35 1 3102.6045 Q9BTC0 Q9BTC0 1275 1309 DIDO1 Death-inducer obliterator 1 yes yes 3 3.4453E-32 78.618 By MS/MS 1 0.50395 0.58341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.50395 0.58341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11687000 7162600 4524400 0 0 0 0 0 0 11687000 7162600 4524400 0 0 0 0 0 0 0 0 0 36748 3824 38621 194676 197975;197976 197975 2 VLSTPDLEVR AHERVLQDLVMDILRVLSTPDLEVRKKTLQ MDILRVLSTPDLEVRKKTLQLALDLVSSRN R V L V R K 0 1 0 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 2 0 0 10 0 1127.6186 P53618;E9PP73 P53618 328 337 COPB1 Coatomer subunit beta yes no 2 0.0014621 65.305 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 3 1 1 1 1 0.8751 0.78528 32.005 8 Median 0.86598 0.83347 NaN 1 0 Median 0.91664 0.78846 8.2699 3 0 Plateau 0.88431 0.94429 NaN 1 0 Median 0.71031 0.60642 NaN 1 0 Median 1.5598 1.6592 NaN 1 0 Median 0.7719 0.62835 NaN 1 0 Median 38505000 20257000 18248000 19954000 10570000 9384100 9552900 4890100 4662900 4837900 2789600 2048300 921910 465170 456730 1936200 820980 1115300 1302400 721670 580720 36749 2472 38622 194677;194678;194679;194680;194681;194682;194683;194684 197977;197978;197979;197980;197981;197982;197983;197984 197978 8 VLSTPDLEVRK AHERVLQDLVMDILRVLSTPDLEVRKKTLQ DILRVLSTPDLEVRKKTLQLALDLVSSRNV R V L R K K 0 1 0 1 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 11 1 1255.7136 P53618;E9PP73 P53618 328 338 COPB1 Coatomer subunit beta yes no 3 0.065164 16.137 By MS/MS 1 1.2151 1.2567 NaN 1 Median 1.2151 1.2567 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1111600 556620 554990 1111600 556620 554990 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36750 2472 38623 194685 197985 197985 0 VLSTVHTHSSVK LSLLVLHRLLCEHFRVLSTVHTHSSVKSVP HFRVLSTVHTHSSVKSVPENLLKCFGEQNK R V L V K S 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 3 2 0 0 3 0 0 12 0 1293.7041 Q13155;A8MU58 Q13155 148 159 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes no 3 0.0072582 29.807 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 2 1 1.1929 1.1591 14.559 8 Median 1.1789 1.1591 0.36638 2 0 Median 1.3716 1.1872 12.046 2 0 Median 1.204 1.1726 NaN 1 0 Median 1.04 0.89605 13.085 2 0 Median 1.2357 1.2243 NaN 1 0 Median NaN NaN NaN 0 0 Median 4737600 2109400 2628100 1507700 642980 864700 2095900 967550 1128300 409550 173170 236380 390150 185450 204700 334300 140270 194020 0 0 0 36751 2792 38624 194686;194687;194688;194689;194690;194691;194692;194693 197986;197987;197988;197989;197990 197988 5 VLSVDESIIKPEQEFFTAPFEK KNRSSAFGTLNWFTKVLSVDESIIKPEQEF IIKPEQEFFTAPFEKNRMNDFYIVDRDAFF K V L E K N 1 0 0 1 0 1 4 0 0 2 1 2 0 3 2 2 1 0 0 2 0 0 22 1 2552.305 Q4KMQ2 Q4KMQ2 167 188 ANO6 Anoctamin-6 yes yes 3 0.069076 7.5332 By MS/MS 1 0.67571 0.69831 NaN 1 Median 0.67571 0.69831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1071400 761400 310010 1071400 761400 310010 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36752 3023 38625 194694 197991 197991 1 VLSVETPLSIQAHPNK KVKDTFNGNLPFLFKVLSVETPLSIQAHPN LSVETPLSIQAHPNKELAEKLHLQAPQHYP K V L N K E 1 0 1 0 0 1 1 0 1 1 2 1 0 0 2 2 1 0 0 2 0 0 16 0 1731.9519 P34949;H3BPP3;H3BPB8;H3BPM5;F5GX71;H3BUZ9;H3BNY8;H3BT48;H3BP57;H3BMZ9;H3BPU7;H3BT46;H3BN01;B4DYB8 P34949 100 115 MPI Mannose-6-phosphate isomerase yes no 3 4.5806E-08 83.729 By MS/MS 2 0.63118 0.58423 0.027902 2 Median 0.63118 0.58423 0.027902 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26332000 15906000 10426000 26332000 15906000 10426000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36753 1004 38626 194695;194696 197992;197993 197992 2 VLSVETPLSIQAHPNKELAEK KVKDTFNGNLPFLFKVLSVETPLSIQAHPN PLSIQAHPNKELAEKLHLQAPQHYPDANHK K V L E K L 2 0 1 0 0 1 3 0 1 1 3 2 0 0 2 2 1 0 0 2 0 0 21 1 2302.2533 P34949;H3BPP3;H3BPB8;H3BPM5;F5GX71;H3BUZ9;H3BNY8;H3BT48;H3BP57;H3BMZ9;H3BPU7;H3BT46;H3BN01;B4DYB8 P34949 100 120 MPI Mannose-6-phosphate isomerase yes no 3;4 8.5806E-12 66.325 By MS/MS 2 0.68251 0.63417 0.62087 2 Median 0.68251 0.63417 0.62087 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25236000 13903000 11333000 25236000 13903000 11333000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36754 1004 38627 194697;194698 197994;197995 197995 2 VLSVLLNELDGVGLK GARSASKTGCDVQERVLSVLLNELDGVGLK VLSVLLNELDGVGLKTIERRGSKSSQQEFQ R V L L K T 0 0 1 1 0 0 1 2 0 0 5 1 0 0 0 1 0 0 0 3 0 0 15 0 1567.9185 Q9BVQ7;H0YCA5 Q9BVQ7 586 600 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes no 2 0.00035861 58.223 By matching By MS/MS 1 1 1.1428 1.0767 13.54 2 Median 0.97585 0.97836 NaN 1 0 Median 1.3383 1.1848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2177600 1017100 1160500 242320 132770 109540 1935300 884360 1050900 0 0 0 0 0 0 0 0 0 0 0 0 36755 3859 38628 194699;194700 197996 197996 1 VLSVPESTPFTAVLK SFKITLTSDPRLPYKVLSVPESTPFTAVLK VLSVPESTPFTAVLKFAAEEFKVPAATSAI K V L L K F 1 0 0 0 0 0 1 0 0 0 2 1 0 1 2 2 2 0 0 3 0 0 15 0 1586.892 H0Y614;P61960 H0Y614 21 35 UFM1 Ubiquitin-fold modifier 1 yes no 2 3.049E-09 99.522 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1 0.92734 0.76587 47.093 7 Median 0.84491 0.79309 4.9393 2 0 Median 0.90873 0.73889 NaN 1 0 Median 0.92734 0.94254 NaN 1 0 Median 0.99735 0.74464 NaN 1 1 Median 2.5547 2.7003 NaN 1 0 Median 0.93465 0.76053 NaN 1 0 Median 44672000 22541000 22131000 10661000 5676900 4983800 20095000 10207000 9887800 9467800 4705300 4762500 2197900 1237500 960430 1744200 488290 1255900 506700 225960 280740 36756 1153 38629 194701;194702;194703;194704;194705;194706;194707 197997;197998;197999;198000;198001;198002;198003;198004;198005;198006 198004 10 VLTANSNPSSPSAAK KEGADKRKRSRVTDKVLTANSNPSSPSAAK VLTANSNPSSPSAAKRRRT___________ K V L A K R 3 0 2 0 0 0 0 0 0 0 1 1 0 0 2 4 1 0 0 1 0 0 15 0 1442.7365 Q9NV56 Q9NV56 186 200 MRGBP MRG/MORF4L-binding protein yes yes 2 0.007955 32.606 By MS/MS 1 0.84414 0.80445 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84414 0.80445 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1248800 561390 687410 0 0 0 0 0 0 1248800 561390 687410 0 0 0 0 0 0 0 0 0 36757 4123 38630 194708 198007;198008 198007 2 VLTDYYR GENPPDGFMAPKAWKVLTDYYRSLEKN___ FMAPKAWKVLTDYYRSLEKN__________ K V L Y R S 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 7 0 928.46543 O95340 O95340 603 609 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.064484 47.067 By MS/MS 1 1.4592 1.2628 NaN 1 Median NaN NaN NaN 0 0 Median 1.4592 1.2628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7383900 3096600 4287400 0 0 0 7383900 3096600 4287400 0 0 0 0 0 0 0 0 0 0 0 0 36758 1765 38631 194709 198009 198009 1 VLTEDEMGHPEIGDAIAR QEKQDFVQHFSQIVRVLTEDEMGHPEIGDA EDEMGHPEIGDAIARLKEVLEYNAIGGKYN R V L A R L 2 1 0 2 0 0 3 2 1 2 1 0 1 0 1 0 1 0 0 1 0 0 18 0 1951.9309 P14324;A0A087X1D8;A0A087WVN4;A0A087WTP2 P14324 93 110 FDPS Farnesyl pyrophosphate synthase yes no 3 7.4484E-05 41.86 By matching By MS/MS 1 1 0.465 0.43647 68.194 2 Median NaN NaN NaN 0 0 Median 0.299 0.26949 NaN 1 0 Median 0.72318 0.70693 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10609000 6849400 3759400 0 0 0 1353400 1052000 301460 9255300 5797400 3457900 0 0 0 0 0 0 0 0 0 36759 2002 38632 194710;194711 198010;198011 198010 2 VLTEFTR MLVSGDLNAVHGAMRVLTEFTREVTDTQMP NAVHGAMRVLTEFTREVTDTQMPLVAPVIL R V L T R E 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 1 0 0 7 0 864.47052 Q96P70 Q96P70 169 175 IPO9 Importin-9 yes yes 2 0.034996 60.788 By MS/MS By MS/MS 1 1 1.3304 1.2018 13.127 2 Median 1.1287 1.0953 NaN 1 1 Median 1.5683 1.3187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9830200 4182900 5647300 3469800 1705400 1764400 6360500 2477500 3882900 0 0 0 0 0 0 0 0 0 0 0 0 36760 3711 38633 194712;194713 198012;198013 198012 2 VLTEIIASR YELKHALKGAGTNEKVLTEIIASRTPEELR AGTNEKVLTEIIASRTPEELRAIKQVYEEE K V L S R T 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1000.5917 P08758;D6RBL5;E9PHT9 P08758 109 117 ANXA5 Annexin A5;Annexin yes no 2 0.00047525 122.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 1 1 1.1145 1.0213 13.721 13 Median 1.1071 1.04 7.3969 4 0 Median 1.1376 0.95822 1.5726 4 0 Median 0.97214 0.96521 12.533 2 0 Median 1.2675 1.0578 NaN 1 0 Median 1.273 1.2679 NaN 1 0 Median 0.86324 0.72396 NaN 1 0 Median 1583600000 714240000 869320000 1010600000 461340000 549250000 501050000 220710000 280340000 34349000 15493000 18856000 30825000 13607000 17218000 5012400 2119100 2893300 1726300 965440 760890 36761 1909 38634 194714;194715;194716;194717;194718;194719;194720;194721;194722;194723;194724;194725;194726 198014;198015;198016;198017;198018;198019;198020;198021;198022;198023;198024;198025;198026;198027;198028;198029;198030;198031;198032;198033;198034;198035;198036;198037 198014 24 VLTELLEQER PWPLNEAQVQASVVKVLTELLEQERKKVVD ASVVKVLTELLEQERKKVVDTTKESSRKGW K V L E R K 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1228.6663 E7ETY2;A0A3B3IS06;Q13428 Q13428 1318 1327 TCOF1 Treacle protein no no 2 2.2942E-08 169.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 8 5 3 1 1.1233 1.1142 14.274 21 Median 1.1562 1.0996 19.944 2 0 Median 1.0816 0.93896 5.3521 2 0 Median 1.0846 1.1598 9.7207 8 2 Median 1.2557 1.0668 8.4048 5 0 Median 1.0551 1.1142 25.517 3 1 Median 1.2893 1.0515 NaN 1 0 Median 219270000 103280000 116000000 14541000 6931200 7609600 6865800 3201600 3664200 174170000 83255000 90911000 11643000 4788200 6855100 11123000 4750500 6372800 934050 348830 585220 36762 2816;891 38635 194727;194728;194729;194730;194731;194732;194733;194734;194735;194736;194737;194738;194739;194740;194741;194742;194743;194744;194745;194746;194747 198038;198039;198040;198041;198042;198043;198044;198045;198046;198047;198048;198049;198050;198051;198052;198053;198054;198055;198056;198057;198058;198059;198060;198061 198040 24 VLTELLEQERK PWPLNEAQVQASVVKVLTELLEQERKKVVD SVVKVLTELLEQERKKVVDTTKESSRKGWE K V L R K K 0 1 0 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 1 1356.7613 E7ETY2;A0A3B3IS06;Q13428 Q13428 1318 1328 TCOF1 Treacle protein no no 3 6.9936E-05 72.652 By matching By MS/MS 1 1 1.3018 1.3907 22.611 2 Median NaN NaN NaN 0 0 Median 1.7142 1.6318 NaN 1 0 Median 0.98859 1.1852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12791000 5548300 7242700 0 0 0 3758700 1295400 2463300 9032300 4252900 4779300 0 0 0 0 0 0 0 0 0 36763 2816;891 38636 194748;194749 198062;198063 198062 2 VLTELVSK RNSAHSAGVGAIFDRVLTELVSKMRDMRMD VGAIFDRVLTELVSKMRDMRMDKTELGCLR R V L S K M 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 8 0 887.53278 P28702;A0A0G2JKR7;A0A0G2JHI1;P19793;A0A087WZ88;P48443 P28702 420 427 RXRB;RXRA;RXRG Retinoic acid receptor RXR-beta;Retinoic acid receptor RXR-alpha;Retinoic acid receptor RXR-gamma no no 2 0.0054455 75.738 By MS/MS By MS/MS 2 3 1.1754 1.0481 12.57 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1255 1.1629 10.064 2 0 Median 1.1779 1.0108 9.1581 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17735000 7382900 10352000 0 0 0 0 0 0 7485500 3204400 4281100 10249000 4178500 6070700 0 0 0 0 0 0 36764 280;2070 38637 194750;194751;194752;194753;194754 198064;198065;198066;198067;198068 198066 5 VLTFALSEEVRPQDTVSVIGGVAGGSK ERVLGATLLPDLIQKVLTFALSEEVRPQDT QDTVSVIGGVAGGSKHGRKAAWKFIKDNWE K V L S K H 2 1 0 1 0 1 2 4 0 1 2 1 0 1 1 3 2 0 0 5 0 0 27 1 2715.4443 E9PLK3;P55786;H0YDG0 E9PLK3 791 817 NPEPPS Puromycin-sensitive aminopeptidase yes no 3 0.035614 12.346 By MS/MS 1 0.89739 0.89172 NaN 1 Median NaN NaN NaN 0 0 Median 0.89739 0.89172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7687700 3832500 3855200 0 0 0 7687700 3832500 3855200 0 0 0 0 0 0 0 0 0 0 0 0 36765 960 38638 194755 198069 198069 1 VLTFDLTK LIGVYPEQGDCVISKVLTFDLTKYPDANPN GDCVISKVLTFDLTKYPDANPNPNEQ____ K V L T K Y 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 2 0 0 1 0 0 8 0 935.53278 Q14683;G8JLG1 Q14683 1215 1222 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.016427 49.418 By matching By matching By matching By matching By MS/MS By matching 3 3 1 1 1 2 1.196 1.0772 32.5 11 Median 1.3185 1.2226 10.172 3 0 Plateau 1.4827 1.2664 56.028 3 0 Median 0.92572 0.99846 NaN 1 0 Median 1.2164 1.1053 NaN 1 0 Median 0.78875 0.8285 NaN 1 0 Median 1.1917 1.0213 7.5282 2 0 Median 21994000 10094000 11899000 12202000 5245000 6957000 2477700 1153900 1323800 2152600 1112200 1040400 731790 308260 423530 3921400 2052300 1869100 507960 222710 285250 36766 2889 38639 194756;194757;194758;194759;194760;194761;194762;194763;194764;194765;194766 198070;198071 198070 2 VLTFDLTKYPDANPNPNEQ LIGVYPEQGDCVISKVLTFDLTKYPDANPN DLTKYPDANPNPNEQ_______________ K V L E Q - 1 0 3 2 0 1 1 0 0 0 2 1 0 1 3 0 2 0 1 1 0 0 19 1 2175.0484 Q14683;G8JLG1 Q14683 1215 1233 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 2.6367E-17 110.31 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 4 1 0.65124 0.59523 28.275 8 Median 0.63452 0.60984 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.51767 0.55228 NaN 1 1 Median 0.7604 0.68359 NaN 1 0 Median 0.66311 0.70141 37.671 4 0 Median 0.66841 0.57156 NaN 1 0 Median 69727000 43614000 26113000 5818700 3496200 2322400 0 0 0 16638000 11442000 5196300 234580 139950 94621 46852000 28429000 18423000 182950 107110 75838 36767 2889 38640 194767;194768;194769;194770;194771;194772;194773;194774 198072;198073;198074;198075;198076;198077;198078 198076 7 VLTGTPLRPGVSIVSGNTVLAAK LVAGTANGGKVTFTKVLTGTPLRPGVSIVS PGVSIVSGNTVLAAKVPGNQAAVQRIVQPS K V L A K V 2 1 1 0 0 0 0 3 0 1 3 1 0 0 2 2 3 0 0 4 0 0 23 1 2249.3107 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808 Q9HCK8 205 227 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 3 0.016723 15.896 By MS/MS By matching 2 1 0.70175 0.84149 14.876 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66245 0.77986 10.757 2 0 Median 1.008 0.97315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8585000 5008700 3576400 0 0 0 0 0 0 8331100 4881700 3449400 253950 126990 126960 0 0 0 0 0 0 36768 4030 38641 194775;194776;194777 198079;198080 198079 2 VLTGVAGEDAECHAAK SDTKYLEMIYSMCKKVLTGVAGEDAECHAA LTGVAGEDAECHAAKLLEVIILQCKGRGID K V L A K L 4 0 0 1 1 0 2 2 1 0 1 1 0 0 0 0 1 0 0 2 0 0 16 0 1626.7672 O95373 O95373 725 740 IPO7 Importin-7 yes yes 2;3 1.1613E-05 82.171 By MS/MS 2 1.0673 0.9154 15.109 2 Median NaN NaN NaN 0 0 Median 1.0673 0.9154 15.109 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11530000 5387000 6142700 0 0 0 11530000 5387000 6142700 0 0 0 0 0 0 0 0 0 0 0 0 36769 1768 38642 194778;194779 198081;198082;198083 198083 3 VLTIDPTEFK KGNNVYCLDRECRPRVLTIDPTEFKFKLAL ECRPRVLTIDPTEFKFKLALINRKYDEVLH R V L F K F 0 0 0 1 0 0 1 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 10 0 1161.6281 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 589 598 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.00047413 108.74 By MS/MS 2 1.0462 1.0117 NaN 1 Median 1.0462 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12765000 6140000 6625300 12765000 6140000 6625300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36770 2473 38643 194780;194781 198084;198085;198086 198084 3 VLTILEQIPGMVVVADK DYKAFIPGGPSPGSRVLTILEQIPGMVVVA TILEQIPGMVVVADKTSELYQKTYWASYNI R V L D K T 1 0 0 1 0 1 1 1 0 2 2 1 1 0 1 0 1 0 0 4 0 0 17 0 1824.0431 Q8NHP8 Q8NHP8 397 413 PLBD2 Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form yes yes 2 1.9988E-05 76.522 By matching By MS/MS By matching 1 1 1 1.4382 1.2377 37.71 3 Median 1.0347 0.99702 NaN 1 0 Median 1.4382 1.2377 NaN 1 0 Median 1.9362 2.0769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2004200 866750 1137400 104140 55508 48634 1741300 762600 978750 158690 48644 110040 0 0 0 0 0 0 0 0 0 36771 3445 38644 194782;194783;194784 198087;198088 198087 2 VLTISTLR PAGEFKWNGSVHGSKVLTISTLRLTITQLE GSVHGSKVLTISTLRLTITQLENNIPSSFL K V L L R L 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 8 0 901.55967 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 900 907 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0022957 116.88 By MS/MS By MS/MS By matching 2 3 3 1.1596 1.0131 14.009 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0369 1.1149 17.553 2 0 Median 1.3505 1.1757 10.716 3 0 Median NaN NaN NaN 0 0 Median 1.1229 0.93705 6.1784 3 0 Median 34907000 17655000 17252000 0 0 0 0 0 0 30122000 15628000 14493000 3331500 1351700 1979900 0 0 0 1454200 675170 779040 36772 2762 38645 194785;194786;194787;194788;194789;194790;194791;194792 198089;198090;198091;198092;198093;198094;198095;198096 198091 8 VLTLSDDLER EAQRRRMDEISDHAKVLTLSDDLERTIEER SDHAKVLTLSDDLERTIEERVNILFDFVKK K V L E R T 0 1 0 2 0 0 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 10 0 1159.6085 P55010 P55010 225 234 EIF5 Eukaryotic translation initiation factor 5 yes yes 2 0.00040727 98.033 By MS/MS By MS/MS 2 3 0.93141 0.8152 41.855 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0409 1.0264 50.895 2 0 Median 0.93141 0.8152 38.77 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73900000 34404000 39496000 0 0 0 0 0 0 45696000 19150000 26546000 28204000 15254000 12950000 0 0 0 0 0 0 36773 2489 38646 194793;194794;194795;194796;194797 198097;198098;198099;198100;198101;198102;198103 198100 7 VLTPEEQLADK QEEIKKRLEEPEEPKVLTPEEQLADKLRLK EEPKVLTPEEQLADKLRLKKLQEESDLELA K V L D K L 1 0 0 1 0 1 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 11 0 1241.6503 O75822 O75822 107 117 EIF3J Eukaryotic translation initiation factor 3 subunit J yes yes 2 0.00016746 91.584 By MS/MS By MS/MS By MS/MS 1 1 1 0.8373 0.7068 13.436 2 Median NaN NaN NaN 0 0 Median 0.92468 0.77724 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75818 0.64274 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11928000 6469600 5457900 0 0 0 10480000 5694200 4785400 0 0 0 1447900 775380 672510 0 0 0 0 0 0 36774 1698 38647 194798;194799;194800 198104;198105;198106;198107;198108 198106 5 VLTPEEQLADKLR QEEIKKRLEEPEEPKVLTPEEQLADKLRLK PKVLTPEEQLADKLRLKKLQEESDLELAKE K V L L R L 1 1 0 1 0 1 2 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 13 1 1510.8355 O75822 O75822 107 119 EIF3J Eukaryotic translation initiation factor 3 subunit J yes yes 2;3 8.8997E-06 92.925 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 0.87759 0.8286 43.643 8 Median 0.52801 0.53012 70.718 2 0 Median 0.93128 0.84466 NaN 1 0 Median 0.5973 0.65213 69.685 2 0 Median 1.031 0.81285 12.241 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33062000 18655000 14407000 22477000 13514000 8963000 2082300 948540 1133700 7277700 3609100 3668600 1225100 583750 641330 0 0 0 0 0 0 36775 1698 38648 194801;194802;194803;194804;194805;194806;194807;194808 198109;198110;198111;198112;198113;198114;198115 198110 7 VLTPELYAELR DEFPDLSAHNNHMAKVLTPELYAELRAKST HMAKVLTPELYAELRAKSTPSGFTLDDVIQ K V L L R A 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 11 0 1302.7184 P12277;G3V4N7;G3V461 P12277 33 43 CKB Creatine kinase B-type yes no 2 0.00013373 105.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 3 1 1 2 0.8247 0.8157 29.979 14 Median 0.80282 0.7613 31.184 7 4 Median 0.96366 0.83822 17.795 3 0 Median 0.73322 0.80511 NaN 1 0 Median 0.83496 0.71752 NaN 1 0 Median 1.1691 1.1954 40.886 2 0 Median NaN NaN NaN 0 0 Median 463540000 257910000 205630000 339240000 190950000 148290000 60382000 30875000 29506000 53137000 30475000 22663000 3733200 1960700 1772500 7050700 3650200 3400600 0 0 0 36776 1980 38649 194809;194810;194811;194812;194813;194814;194815;194816;194817;194818;194819;194820;194821;194822 198116;198117;198118;198119;198120;198121;198122;198123;198124;198125;198126;198127;198128;198129;198130;198131;198132;198133;198134;198135 198118 20 VLTPTQVK LHVTYAGAAVDELGKVLTPTQVKNRPTSIS AVDELGKVLTPTQVKNRPTSISWDGLDSGK K V L V K N 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 2 0 0 8 0 884.53312 P30086 P30086 40 47 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 0.014311 70.69 By MS/MS By MS/MS By matching 3 1 2 0.89599 0.81669 93.064 6 Median 0.8697 0.85349 5.7001 3 0 Plateau 1.3706 1.1444 NaN 1 1 Median 0.30822 0.31011 167.15 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66815000 37730000 29085000 40112000 20979000 19133000 15229000 6328000 8901400 11474000 10423000 1051300 0 0 0 0 0 0 0 0 0 36777 2188 38650 194823;194824;194825;194826;194827;194828 198136;198137;198138;198139 198136 4 VLTQMGSPSIR WIELHLNGPLQWLDKVLTQMGSPSIRCSSV WLDKVLTQMGSPSIRCSSVS__________ K V L I R C 0 1 0 0 0 1 0 1 0 1 1 0 1 0 1 2 1 0 0 1 0 0 11 0 1187.6332 P84022;H3BQ00 P84022 410 420 SMAD3 Mothers against decapentaplegic homolog 3 yes no 2 0.00013837 91.867 By MS/MS By matching 1 1 0.82442 0.76508 10.304 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82636 0.82291 NaN 1 0 Median 0.82248 0.71132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7815900 4092500 3723400 0 0 0 0 0 0 6910000 3622600 3287400 905880 469880 436010 0 0 0 0 0 0 36778 2664 38651 194829;194830 198140;198141 198141 2 VLTQPSQSAVR CATLEENINSALDIKVLTQPSQSAVRGGPG LDIKVLTQPSQSAVRGGPGRSTMPTPGNTA K V L V R G 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 2 1 0 0 2 0 0 11 0 1184.6513 Q9UP83 Q9UP83 299 309 COG5 Conserved oligomeric Golgi complex subunit 5 yes yes 2 0.0041947 48.423 By MS/MS 1 0.98153 0.87345 NaN 1 Median NaN NaN NaN 0 0 Median 0.98153 0.87345 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1140000 612840 527160 0 0 0 1140000 612840 527160 0 0 0 0 0 0 0 0 0 0 0 0 36779 4354 38652 194831 198142 198142 1 VLTSDIEK LLMDLQDRNEKLFYRVLTSDIEKFMPIVYT NEKLFYRVLTSDIEKFMPIVYTPTVGLACQ R V L E K F 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 903.49131 P48163 P48163 89 96 ME1 NADP-dependent malic enzyme yes yes 2 0.0035928 86.794 By MS/MS By MS/MS 1 1 1.1807 0.99791 NaN 1 Median NaN NaN NaN 0 0 Median 1.1807 0.99791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6114600 3054700 3059900 0 0 0 6114600 3054700 3059900 0 0 0 0 0 0 0 0 0 0 0 0 36780 2359 38653 194832;194833 198143;198144;198145 198144 3 VLTSGIFETK QADYVPSDQDLLRCRVLTSGIFETKFQVDK LLRCRVLTSGIFETKFQVDKVNFHMFDVGG R V L T K F 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1093.6019 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6;A0A590UJQ2;A0A590UJS2;S4R3E3;A0A590UJ22 Q5JWF2 845 854 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 0.00036109 103.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 3 1 1.2371 1.1198 20.975 10 Median 1.1144 1.0908 13.781 3 1 Median 1.23 1.0479 NaN 1 0 Median 1.4125 1.4185 14.594 2 1 Median 1.5458 1.3202 19.258 3 1 Plateau 0.78308 0.784 NaN 1 1 Median NaN NaN NaN 0 0 Median 102910000 46230000 56675000 23008000 11693000 11314000 20530000 8811300 11719000 40344000 16171000 24173000 6366600 2394700 3971900 12657000 7159900 5497000 0 0 0 36781 2616 38654 194834;194835;194836;194837;194838;194839;194840;194841;194842;194843 198146;198147;198148;198149;198150;198151;198152;198153;198154;198155;198156;198157 198151 12 VLTSGSLPPEK SHLNEDNNTRVLFERVLTSGSLPPEKSGEI LFERVLTSGSLPPEKSGEIWARFLAFESNI R V L E K S 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 2 1 0 0 1 0 0 11 0 1126.6234 Q12996;E9PLP8 Q12996 470 480 CSTF3 Cleavage stimulation factor subunit 3 yes no 2 0.00016143 81.338 By matching By MS/MS By MS/MS 1 1 1 0.83869 0.72979 8.6118 3 Median NaN NaN NaN 0 0 Median 0.9364 0.84593 NaN 1 0 Median 0.71715 0.72979 NaN 1 0 Median 0.83869 0.72766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12945000 6944200 6000300 0 0 0 716290 309590 406690 10293000 5876700 4416600 1934900 757920 1177000 0 0 0 0 0 0 36782 2777 38655 194844;194845;194846 198158;198159;198160;198161;198162 198160 5 VLTTAGSYVR KYAPSKRWHIDTIMRVLTTAGSYVRDDAVP DTIMRVLTTAGSYVRDDAVPNLIQLITNSV R V L V R D 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 2 0 1 2 0 0 10 0 1065.5819 O43747 O43747 425 434 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.00039724 98.033 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.91291 0.82255 9.0014 4 Median 0.95967 0.90815 NaN 1 0 Median 1.0034 0.86735 NaN 1 0 Median 0.74091 0.78008 NaN 1 0 Median 0.86843 0.74854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125510000 68451000 57055000 8793200 4074200 4719000 11679000 5866300 5812400 85881000 49298000 36583000 19154000 9212900 9940700 0 0 0 0 0 0 36783 1587 38656 194847;194848;194849;194850 198163;198164;198165;198166;198167;198168;198169 198163 7 VLTTGYWPTQSATPK QATGVSLGGVDLTVRVLTTGYWPTQSATPK VLTTGYWPTQSATPKCNIPPAPRHAFEIFR R V L P K C 1 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 4 1 1 1 0 0 15 0 1648.8461 Q13618;A0A087WTG3 Q13618 507 521 CUL3 Cullin-3 yes no 2 3.167E-06 90.653 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0334 0.93098 15.372 5 Median 0.81113 0.7401 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.936 1.0089 15.952 2 0 Median 1.0709 0.93098 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1839 0.988 NaN 1 0 Median 23163000 11944000 11219000 9379800 5253200 4126700 0 0 0 12401000 6034300 6366900 757930 396110 361810 0 0 0 624110 260870 363240 36784 2831 38657 194851;194852;194853;194854;194855 198170;198171;198172 198171 3 VLTVINQTQK SKLSKIRVVRKSIARVLTVINQTQKENLRK KSIARVLTVINQTQKENLRKFYKGKKYKPL R V L Q K E 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1142.6659 P42766;F2Z388 P42766 57 66 RPL35 60S ribosomal protein L35 yes no 2 5.2125E-22 193.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 3 5 1.3178 1.1316 56.333 19 Median 1.1971 1.1151 5.1944 3 0 Median 1.1882 1.0131 113.33 4 0 Median 1.3014 1.2296 20.457 2 1 Median 1.4483 1.1839 10.087 2 0 Median 1.1776 1.3311 37.316 3 0 Median 1.4259 1.1994 6.2817 5 3 Median 299060000 135930000 163130000 120480000 56096000 64383000 101270000 46018000 55252000 35222000 15702000 19519000 10884000 4723100 6160500 14894000 6707600 8186100 16311000 6683500 9627900 36785 2316 38658 194856;194857;194858;194859;194860;194861;194862;194863;194864;194865;194866;194867;194868;194869;194870;194871;194872;194873;194874 198173;198174;198175;198176;198177;198178;198179;198180;198181;198182;198183;198184;198185;198186;198187;198188;198189;198190;198191;198192;198193;198194 198183 22 VLTVINQTQKENLR SKLSKIRVVRKSIARVLTVINQTQKENLRK RVLTVINQTQKENLRKFYKGKKYKPLDLRP R V L L R K 0 1 2 0 0 2 1 0 0 1 2 1 0 0 0 0 2 0 0 2 0 0 14 1 1654.9366 P42766;F2Z388 P42766 57 70 RPL35 60S ribosomal protein L35 yes no 2;3 4.7428E-16 189.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 2 5 1.1193 1.1489 21.14 19 Median 1.1722 1.1494 10.444 5 1 Median 1.1939 1.0539 29.988 3 1 Median 1.1186 1.1549 9.6203 4 0 Median 1.2431 1.1004 11.925 2 0 Median 1.0076 1.1384 35.27 5 0 Median NaN NaN NaN 0 0 Median 400140000 188130000 212010000 275320000 131740000 143580000 60834000 25983000 34850000 21728000 9381800 12346000 11802000 4983300 6818600 30455000 16037000 14417000 0 0 0 36786 2316 38659 194875;194876;194877;194878;194879;194880;194881;194882;194883;194884;194885;194886;194887;194888;194889;194890;194891;194892;194893 198195;198196;198197;198198;198199;198200;198201;198202;198203;198204;198205;198206;198207;198208;198209;198210;198211;198212;198213;198214;198215;198216;198217;198218;198219;198220 198199 26 VLTVINQTQKENLRK SKLSKIRVVRKSIARVLTVINQTQKENLRK VLTVINQTQKENLRKFYKGKKYKPLDLRPK R V L R K F 0 1 2 0 0 2 1 0 0 1 2 2 0 0 0 0 2 0 0 2 0 0 15 2 1783.0316 P42766;F2Z388 P42766 57 71 RPL35 60S ribosomal protein L35 yes no 3;4 4.73E-10 119.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 3 1.1453 1.2758 19.704 12 Median 1.1463 1.2049 5.5161 3 0 Median 1.4116 1.3594 30.111 4 0 Median 1.1106 1.2534 NaN 1 0 Median 1.0923 0.90099 NaN 1 0 Median 1.1273 1.3309 14.301 3 0 Median NaN NaN NaN 0 0 Median 171110000 76183000 94929000 137850000 61790000 76055000 18642000 7793100 10849000 2962000 1297200 1664800 2424700 1075500 1349200 9237600 4227100 5010600 0 0 0 36787 2316 38660 194894;194895;194896;194897;194898;194899;194900;194901;194902;194903;194904;194905 198221;198222;198223;198224;198225;198226;198227;198228;198229;198230;198231;198232;198233;198234 198230 14 VLTWDVGK LTPTQGSYTFDPVTKVLTWDVGKITPQKLP TFDPVTKVLTWDVGKITPQKLPSLKGLVNL K V L G K I 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 8 0 916.50182 Q9Y2T2 Q9Y2T2 338 345 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.01731 48.756 By MS/MS By matching By matching 1 1 1 1.1056 1.0509 22.772 3 Median 1.1056 1.0509 NaN 1 0 Median 0.8847 0.77806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3639 1.2161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6411000 2983300 3427700 3824400 1782500 2041900 988830 518220 470620 0 0 0 1597800 682610 915150 0 0 0 0 0 0 36788 4391 38661 194906;194907;194908 198235 198235 1 VLVAEVNALQGMAAIGQR NLRGQTVCNVKLLHRVLVAEVNALQGMAAI AEVNALQGMAAIGQRPLLMEEISTVLQYVV R V L Q R P 4 1 1 0 0 2 1 2 0 1 2 0 1 0 0 0 0 0 0 3 0 0 18 0 1839.0037 Q92621 Q92621 1235 1252 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 3.7616E-06 78.653 By matching By MS/MS By matching 1 2 2 1.1694 1.0943 6.7266 5 Median NaN NaN NaN 0 0 Median 1.234 1.0943 NaN 1 0 Median 1.0682 1.1857 0.94024 2 0 Median 1.1965 1.0411 3.0159 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4485100 2122000 2363100 0 0 0 345620 176480 169140 3840600 1809600 2031000 298900 135910 162990 0 0 0 0 0 0 36789 3547 38662 194909;194910;194911;194912;194913 198236;198237;198238;198239 198237 4 VLVAFGQR FSYPLDLLLKLHDERVLVAFGQRDGIRGIK LKLHDERVLVAFGQRDGIRGIKFVVLADPR R V L Q R D 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 8 0 888.51814 E9PKS9;E9PQE8;E9PN70;Q9Y296;G3V1A0;G5EA23;J3KP27 E9PKS9 47 54 TRAPPC4 Trafficking protein particle complex subunit 4 yes no 2 0.0094539 60.788 By MS/MS By MS/MS By matching 1 1 1 1.1043 1.0429 9.3259 3 Plateau 1.1049 1.0429 NaN 1 0 Median 1.0343 0.87793 NaN 1 1 Median 1.0743 1.0182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9927500 4517300 5410200 5215400 2131300 3084100 2062300 1083900 978380 2649900 1302100 1347700 0 0 0 0 0 0 0 0 0 36790 949 38663 194914;194915;194916 198240;198241 198240 2 VLVAGDTMDSVK GSREMAEAFAGEIPKVLVAGDTMDSVKQSA IPKVLVAGDTMDSVKQSAALCLLRLYRTSP K V L V K Q 1 0 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 3 0 0 12 0 1233.6275 O94973;A0A0G2JS82;A0A0G2JQM1;E9PR62;A0A0G2JQA4;A0A0G2JRF9;H0YDE9;H0YEG0;A0A0G2JQT9;A0A0G2JS17;A0A0G2JRS3;E9PQP4 O94973 154 165 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0049 1.0264 19.401 3 Median 0.78764 0.76248 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0049 1.0979 NaN 1 0 Median 1.183 1.0264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22451000 11834000 10618000 10809000 6427300 4381500 0 0 0 9749100 4442400 5306700 1893600 964040 929520 0 0 0 0 0 0 36791 1741 38664 194917;194918;194919;194920 198242;198243;198244;198245;198246;198247 198244 6 VLVAQHDVYK DKVAQDLCKVAGIAKVLVAQHDVYKGLLPE AGIAKVLVAQHDVYKGLLPEELTPLILATQ K V L Y K G 1 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 3 0 0 10 0 1170.6397 P13804;H0YL12;H0YLU7;H0YKF0 P13804 76 85 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.00038082 99.802 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2284 1.0997 37.254 4 Median 0.96696 0.87742 NaN 1 0 Median 1.5605 1.3088 NaN 1 0 Median 0.96529 0.92406 NaN 1 0 Median 2.3349 1.9636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61378000 26629000 34749000 30647000 15088000 15559000 21615000 7997200 13618000 4369800 2041700 2328100 4746100 1501700 3244400 0 0 0 0 0 0 36792 1996 38665 194921;194922;194923;194924 198248;198249;198250;198251;198252;198253;198254;198255 198253 8 VLVASATMDTAR FGLIKDVARFRPELKVLVASATMDTARFST ELKVLVASATMDTARFSTFFDDAPVFRIPG K V L A R F 3 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 2 0 0 2 0 0 12 0 1233.6387 O60231;A0A140T947;Q5SQH5;A0A140T8Y5;A0A140T9T4 O60231 548 559 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes no 2 4.456E-06 142.43 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 1 1 1 1 0.91861 0.91703 31.737 9 Median 1.0034 0.96449 35.592 2 0 Median 0.97648 0.82029 30.237 3 0 Plateau 0.91861 1.01 NaN 1 0 Median 1.1162 0.94674 NaN 1 0 Median 0.89106 0.91703 NaN 1 0 Median 1.4352 1.1767 NaN 1 0 Median 44247000 20117000 24130000 10833000 3920900 6911600 10708000 5258700 5449600 13864000 7053900 6810100 7382700 3241300 4141500 713410 337260 376150 745890 304590 441300 36793 1605 38666 194925;194926;194927;194928;194929;194930;194931;194932;194933;194934 198256;198257;198258;198259;198260;198261;198262 198256 6 VLVATNVAAR QREITLKGFREGSFKVLVATNVAARGLDIP EGSFKVLVATNVAARGLDIPEVDLVIQSSP K V L A R G 3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 10 0 1012.6029 Q9BQ39;A0A087WVC1 Q9BQ39 441 450 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 3.5319E-05 141.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 3 4 1.0985 1.06 24.988 12 Median NaN NaN NaN 0 0 Median 1.1865 1.0315 4.505 2 1 Median 1.1753 1.2248 13.793 2 0 Median 1.002 0.86362 NaN 1 0 Median 1.0523 1.0552 33.795 3 0 Median 1.1745 0.965 30.573 4 1 Median 86651000 40484000 46167000 0 0 0 3734500 1533900 2200500 22526000 10579000 11947000 9000900 4805700 4195100 37183000 17083000 20100000 14207000 6482600 7724100 36794 3781 38667 194935;194936;194937;194938;194939;194940;194941;194942;194943;194944;194945;194946 198263;198264;198265;198266;198267;198268;198269;198270;198271;198272;198273;198274 198265 12 VLVAVKR ______________________________ ______________________________ R V L K R V 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 7 1 783.53306 P38117;M0QY67 P38117 6 12 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.024481 66.994 By MS/MS By MS/MS By MS/MS 1 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2577900 0 2577900 1072700 0 1072700 874960 0 874960 630290 0 630290 0 0 0 0 0 0 0 0 0 36795 2272 38668 194947;194948;194949 198275;198276;198277 198275 3 VLVDGEEHVGFLK VVPGVKPQDWISAARVLVDGEEHVGFLKTD ARVLVDGEEHVGFLKTDGSFVVHDIPSGSY R V L L K T 0 0 0 1 0 0 2 2 1 0 2 1 0 1 0 0 0 0 0 3 0 0 13 0 1440.7613 Q9NPA0;H0YDT8 Q9NPA0 67 79 EMC7 ER membrane protein complex subunit 7 yes no 2;3 8.3176E-05 77.593 By MS/MS By MS/MS 2 1 1.1189 0.95577 17.867 3 Median 1.1942 1.1113 21.325 2 1 Median 1.1189 0.94133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37869000 15762000 22107000 33554000 13481000 20073000 4314500 2280500 2034000 0 0 0 0 0 0 0 0 0 0 0 0 36796 4044 38669 194950;194951;194952 198278;198279;198280;198281 198279 4 VLVDMSR ATILKNIGVDNPAAKVLVDMSRVQDDEVGD GVDNPAAKVLVDMSRVQDDEVGDGTTSVTV K V L S R V 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 7 0 818.43202 P78371;F5GWF6;F8VQ14 P78371 83 89 CCT2 T-complex protein 1 subunit beta yes no 2 0.0011623 132.96 By MS/MS By MS/MS By matching 3 1 1 1.2244 1.1349 12.63 5 Median 1.3444 1.2781 6.1468 3 1 Plateau 1.2244 1.0259 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1082 0.94581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77390000 33943000 43447000 33134000 14329000 18806000 43278000 19192000 24086000 0 0 0 977550 422670 554880 0 0 0 0 0 0 36797 2644 38670 194953;194954;194955;194956;194957 198282;198283;198284;198285;198286 198283 5 VLVDQTTGLSR VEDMFSRFGRIINSRVLVDQTTGLSRGVAF INSRVLVDQTTGLSRGVAFIRFDKRSEAEE R V L S R G 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1187.651 Q15717 Q15717 137 147 ELAVL1 ELAV-like protein 1 yes yes 2 8.9242E-10 174.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 8 6 1.1766 1.0285 26.135 19 Median 1.1999 1.1211 NaN 1 0 Median 1.1541 0.9596 NaN 1 0 Median 1.0708 1.0318 0.45469 2 0 Median 1.2144 1.0143 6.4889 3 0 Median 1.0434 1.0808 47.083 6 2 Median 1.2011 0.94943 6.478 6 0 Median 1018800000 426130000 592710000 43889000 18853000 25036000 31701000 14396000 17306000 99150000 48413000 50736000 63645000 28426000 35219000 587910000 227640000 360270000 192540000 88405000 104140000 36798 2964 38671 194958;194959;194960;194961;194962;194963;194964;194965;194966;194967;194968;194969;194970;194971;194972;194973;194974;194975;194976;194977;194978 198287;198288;198289;198290;198291;198292;198293;198294;198295;198296;198297;198298;198299;198300;198301;198302;198303;198304;198305;198306;198307;198308;198309;198310;198311;198312;198313;198314;198315;198316;198317;198318;198319;198320 198291 34 VLVDSLVEDDR QQQWLLYLSNSGYLKVLVDSLVEDDRTLQS GYLKVLVDSLVEDDRTLQSLLTPQPPLLKA K V L D R T 0 1 0 3 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 3 0 0 11 0 1258.6405 Q92621;U3KPX2 Q92621 1524 1534 NUP205 Nuclear pore complex protein Nup205 yes no 2 0.00012467 138.66 By MS/MS By MS/MS By MS/MS 1 2 2 1.2812 1.1417 17.811 5 Median NaN NaN NaN 0 0 Median 1.3872 1.1866 NaN 1 1 Median 0.93493 1.0228 15.557 2 0 Median 1.5012 1.3043 20.732 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56088000 26372000 29716000 0 0 0 4602000 2087800 2514300 47551000 22664000 24887000 3935000 1620100 2314900 0 0 0 0 0 0 36799 3547 38672 194979;194980;194981;194982;194983 198321;198322;198323;198324 198321 4 VLVDSSFGQPTTQGEAR WRLVFLVKNFPVGQRVLVDSSFGQPTTQGE VDSSFGQPTTQGEARREEATRQGELPLVKE R V L A R R 1 1 0 1 0 2 1 2 0 0 1 0 0 1 1 2 2 0 0 2 0 0 17 0 1790.8799 Q10570 Q10570 817 833 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2;3 2.1821E-40 205.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 5 4 1 1 1.085 0.99053 62.094 14 Median 1.5572 1.5371 NaN 1 1 Median 1.0359 0.84846 17.557 2 1 Median 0.90731 0.99738 28.77 5 0 Median 1.1287 0.99053 110.88 4 0 Median 1.0474 1.1005 NaN 1 0 Median 1.1794 0.9834 NaN 1 0 Median 297570000 151070000 146500000 8123300 3609000 4514300 13773000 5871800 7900900 244550000 128530000 116020000 26967000 11200000 15767000 3614400 1573700 2040700 547080 292250 254830 36800 2753 38673 194984;194985;194986;194987;194988;194989;194990;194991;194992;194993;194994;194995;194996;194997 198325;198326;198327;198328;198329;198330;198331;198332;198333;198334;198335;198336;198337;198338;198339;198340 198330 16 VLVDVER SAYKHADGKKIDGRRVLVDVERGRTVKGWR GKKIDGRRVLVDVERGRTVKGWRPRRLGGG R V L E R G 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 7 0 828.47052 P08621 P08621 174 180 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0022148 108.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 3 4 3 1.1217 1.0722 9.6978 17 Median 1.0219 0.98321 NaN 1 0 Median 1.1868 1.0176 2.9721 2 0 Median 1.0509 1.0845 10.832 4 0 Median 1.2676 1.0745 3.8258 3 0 Median 1.0768 1.0777 14.462 4 0 Median 1.4278 1.1591 12.073 3 0 Median 254050000 120970000 133080000 6826000 3445100 3380900 14783000 6302300 8480500 83007000 40818000 42189000 16023000 6891100 9131700 97011000 47181000 49829000 36396000 16330000 20067000 36801 1905 38674 194998;194999;195000;195001;195002;195003;195004;195005;195006;195007;195008;195009;195010;195011;195012;195013;195014 198341;198342;198343;198344;198345;198346;198347;198348;198349;198350;198351;198352;198353;198354;198355;198356;198357;198358;198359;198360;198361 198349 21 VLVEATYNPNMPFK QLSAVKGKTPQVGDRVLVEATYNPNMPFKW RVLVEATYNPNMPFKWNAQRIQTLPNQNQS R V L F K W 1 0 2 0 0 0 1 0 0 0 1 1 1 1 2 0 1 0 1 2 0 0 14 0 1621.8174 Q8IX12;A0A0C4DGG8;F5H2E6;F5H3E1 Q8IX12 186 199 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 1.047E-05 145.89 By matching By matching By MS/MS By matching By matching 1 3 3 2 1 0.86714 0.81583 19.544 10 Median 0.95723 0.93168 NaN 1 0 Median 0.90353 0.78556 30.118 3 0 Median 0.67065 0.71563 13.306 3 1 Median 0.92108 0.80794 17.765 2 0 Median NaN NaN NaN 0 0 Median 1.0521 0.92327 NaN 1 0 Median 111230000 64647000 46585000 7154200 3622500 3531700 9398400 4571900 4826500 91075000 54484000 36592000 3153300 1731100 1422200 0 0 0 449760 237270 212480 36802 3331 38675;38676 195015;195016;195017;195018;195019;195020;195021;195022;195023;195024 198362;198363;198364;198365;198366 198364 1712 5 VLVEGPLNNLR QPLWNHLLNYYKEQKVLVEGPLNNLRESLM KEQKVLVEGPLNNLRESLMQFSKPRKLVNT K V L L R E 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1222.7034 Q92900 Q92900 908 918 UPF1 Regulator of nonsense transcripts 1 yes yes 2 2.5159E-05 155.75 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.91373 0.89275 22.17 5 Median 0.92654 0.89275 NaN 1 0 Median 0.81713 0.69018 NaN 1 1 Median 0.91373 1.0049 NaN 1 0 Median 0.851 0.72449 NaN 1 0 Median 1.1327 1.1716 NaN 1 0 Median NaN NaN NaN 0 0 Median 25858000 12858000 13000000 10981000 5668100 5312600 4820700 2657900 2162800 6879700 2973100 3906600 2292200 1196600 1095600 884580 362110 522470 0 0 0 36803 3564 38677 195025;195026;195027;195028;195029 198367;198368;198369;198370;198371;198372;198373;198374 198369 8 VLVEPDAGAGVAVMK AAGGGDGARRFGSQRVLVEPDAGAGVAVMK VLVEPDAGAGVAVMKFKNPPVNSLSLEFLT R V L M K F 3 0 0 1 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 4 0 0 15 0 1454.7803 P42126 P42126 47 61 ECI1 Enoyl-CoA delta isomerase 1, mitochondrial yes yes 2 4.2688E-10 127.42 By MS/MS By MS/MS By MS/MS By MS/MS 5 4 2 1 0.83468 0.77652 22.232 12 Median 0.67432 0.64447 16.512 5 0 Median 1.0926 0.91194 10.697 4 1 Median 0.77256 0.72427 12.421 2 0 Median 1.1477 0.94903 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 713340000 392690000 320650000 605760000 338250000 267510000 63907000 28836000 35071000 42274000 24996000 17278000 1402300 608760 793570 0 0 0 0 0 0 36804 2305 38678;38679 195030;195031;195032;195033;195034;195035;195036;195037;195038;195039;195040;195041 198375;198376;198377;198378;198379;198380;198381;198382;198383;198384;198385;198386;198387;198388;198389;198390;198391;198392;198393;198394;198395 198380 1051 21 VLVEQQQDR LAEALLSGDLEKFSRVLVEQQQDRARREQE LEKFSRVLVEQQQDRARREQERIRLFSADP R V L D R A 0 1 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1113.5778 Q5TDH0;H0YII4;H0YI90 Q5TDH0 174 182 DDI2 Protein DDI1 homolog 2 yes no 2 0.00070224 103.56 By MS/MS By MS/MS 1 1 1.306 1.2039 8.3125 2 Median 1.2853 1.2768 NaN 1 0 Median 1.327 1.1352 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4602200 2036500 2565800 1601300 838550 762790 3000900 1197900 1803000 0 0 0 0 0 0 0 0 0 0 0 0 36805 3103 38680 195042;195043 198396;198397;198398;198399 198398 4 VLVFVMGK GGEPTYNVAVGRAGRVLVFVMGKEGVHGGG AVGRAGRVLVFVMGKEGVHGGGLNKKAYSM R V L G K E 0 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 3 0 0 8 0 891.5252 C9J712;P35080 C9J712 60 67 PFN2 Profilin-2 yes no 2 0.008475 62.714 By MS/MS By MS/MS By MS/MS By matching By matching 4 2 1 1 1 1.3574 1.1356 13.675 9 Median 1.1599 1.0436 8.5206 4 0 Median 1.4176 1.1816 5.613 2 0 Median 1.4968 1.4577 NaN 1 0 Median 1.6505 1.3693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4364 1.0715 NaN 1 0 Median 67053000 31304000 35749000 40239000 19339000 20900000 3735500 1489900 2245600 3876500 1459500 2417000 363180 109690 253490 0 0 0 18840000 8906700 9932900 36806 680 38681;38682 195044;195045;195046;195047;195048;195049;195050;195051;195052 198400;198401;198402;198403;198404;198405;198406 198404 246 7 VLVHRPHGPELDADPYDPGEEDPAQSR LPFICNLLRRHPACRVLVHRPHGPELDADP ADPYDPGEEDPAQSRALESSLWELQALQRH R V L S R A 2 2 0 4 0 1 3 2 2 0 2 0 0 0 5 1 0 0 1 2 0 0 27 1 2995.406 Q9BVI4 Q9BVI4 403 429 NOC4L Nucleolar complex protein 4 homolog yes yes 4 2.4418E-13 53.475 By MS/MS By MS/MS 1 1 0.5048 0.54621 4.8843 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48855 0.52767 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52159 0.56541 NaN 1 0 Median NaN NaN NaN 0 0 Median 20502000 13867000 6635300 0 0 0 0 0 0 7593400 5397700 2195700 0 0 0 12909000 8469400 4439600 0 0 0 36807 3854 38683 195053;195054 198407;198408 198408 2 VLVIGAGGLGCELLK EPSTESLQFLLDTCKVLVIGAGGLGCELLK VLVIGAGGLGCELLKNLALSGFRQIHVIDM K V L L K N 1 0 0 0 1 0 1 4 0 1 4 1 0 0 0 0 0 0 0 2 0 0 15 0 1497.8589 Q8TBC4;F8WF86 Q8TBC4 72 86 UBA3 NEDD8-activating enzyme E1 catalytic subunit yes no 2 0.00036566 59.542 By MS/MS 1 0.89307 0.76193 NaN 1 Median NaN NaN NaN 0 0 Median 0.89307 0.76193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3492700 1777500 1715300 0 0 0 3492700 1777500 1715300 0 0 0 0 0 0 0 0 0 0 0 0 36808 3460 38684 195055 198409 198409 1 VLVIGATNRPDSLDPALR LTCMDDLNNVAATARVLVIGATNRPDSLDP IGATNRPDSLDPALRRAGRFDREICLGIPD R V L L R R 2 2 1 2 0 0 0 1 0 1 3 0 0 0 2 1 1 0 0 2 0 0 18 1 1906.0636 O15381 O15381 404 421 NVL Nuclear valosin-containing protein-like yes yes 3 0.017595 19.715 By MS/MS 1 0.6 0.65191 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6 0.65191 NaN 1 0 Median NaN NaN NaN 0 0 Median 4538600 2737800 1800800 0 0 0 0 0 0 0 0 0 0 0 0 4538600 2737800 1800800 0 0 0 36809 1542 38685 195056 198410 198410 1 VLVIGATNRPDSLDPALRR LTCMDDLNNVAATARVLVIGATNRPDSLDP GATNRPDSLDPALRRAGRFDREICLGIPDE R V L R R A 2 3 1 2 0 0 0 1 0 1 3 0 0 0 2 1 1 0 0 2 0 0 19 2 2062.1647 O15381 O15381 404 422 NVL Nuclear valosin-containing protein-like yes yes 3;4 0.00072107 30.974 By MS/MS 2 0.67 0.77457 9.3531 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67 0.77457 9.3531 2 0 Median NaN NaN NaN 0 0 Median 14781000 9190800 5590200 0 0 0 0 0 0 0 0 0 0 0 0 14781000 9190800 5590200 0 0 0 36810 1542 38686 195057;195058 198411;198412 198412 2 VLVIGELGVGK AAAAPAPETREHLFKVLVIGELGVGKTSII HLFKVLVIGELGVGKTSIIKRYVHQLFSQH K V L G K T 0 0 0 0 0 0 1 3 0 1 2 1 0 0 0 0 0 0 0 3 0 0 11 0 1082.6699 Q13637 Q13637 28 38 RAB32 Ras-related protein Rab-32 yes yes 2 0.00068187 64.711 By MS/MS By matching 2 1 1.3859 1.2882 8.0562 3 Plateau 1.3389 1.2902 0.21535 2 0 Median 1.313 1.1222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9568400 4033000 5535500 8639900 3625200 5014700 928540 407780 520760 0 0 0 0 0 0 0 0 0 0 0 0 36811 2833 38687 195059;195060;195061 198413;198414 198413 2 VLVLAPTR LQRNQETIKKSRSPKVLVLAPTRELANQVA KKSRSPKVLVLAPTRELANQVAKDFKDITR K V L T R E 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 867.55419 Q9BQ39;A0A087WVC1 Q9BQ39 214 221 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.0042476 82.671 By MS/MS By MS/MS By MS/MS 2 1 1 1.7002 1.4649 27.019 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98673 1.0071 NaN 1 0 Median 1.7002 1.4649 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.0901 1.7017 NaN 1 1 Median 13013000 5529000 7483800 0 0 0 0 0 0 9307600 4293400 5014200 1830500 703850 1126600 0 0 0 1874800 531720 1343100 36812 3781 38688 195062;195063;195064;195065 198415;198416;198417;198418;198419 198417 5 VLVLDTDYKK KIPAVFKIDALNENKVLVLDTDYKKYLLFC LNENKVLVLDTDYKKYLLFCMENSAEPEQS K V L K K Y 0 0 0 2 0 0 0 0 0 0 2 2 0 0 0 0 1 0 1 2 0 0 10 1 1192.6703 CON__P02754 CON__P02754 92 101 yes yes 2 0.0074451 59.245 By MS/MS By MS/MS 1 1 0.091826 0.081943 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.091826 0.081943 NaN 1 1 Median 2185200 2146100 39169 0 0 0 0 0 0 0 0 0 1261300 1261300 0 0 0 0 923950 884790 39169 + 36813 745 38689 195066;195067 198420;198421 198420 2 VLVLSQDYGK FQEMLYIMDWMDEMKVLVLSQDYGKHLLGV MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV K V L G K H 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1120.6128 Q01082;A0A087WUZ3;F8W6C1 Q01082 549 558 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 3.2347E-10 170.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 3 2 2 1.1446 1.0768 13.412 15 Median 1.4129 1.3782 5.0442 2 0 Median 1.2433 1.1071 3.4444 4 3 Median 1.0302 1.0458 4.14 2 0 Median 1.1395 1.0207 14.41 3 0 Median 0.99582 1.0334 9.2086 2 0 Median 1.1085 0.93156 0.55687 2 0 Median 271100000 127350000 143750000 23532000 9859800 13672000 65304000 27372000 37931000 113730000 57770000 55961000 22175000 10244000 11931000 35525000 17092000 18432000 10830000 5010800 5819300 36814 2681 38690 195068;195069;195070;195071;195072;195073;195074;195075;195076;195077;195078;195079;195080;195081;195082 198422;198423;198424;198425;198426;198427;198428;198429;198430;198431;198432;198433;198434;198435;198436;198437;198438;198439 198425 18 VLVLVPTR LERLIYKPRQAPVTRVLVLVPTRELGIQVH RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ R V L T R E 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 3 0 0 8 0 895.58549 B7Z6D5;Q96GQ7;A0A087X059 B7Z6D5 261 268 DDX27 Probable ATP-dependent RNA helicase DDX27 yes no 2 0.0044851 81.297 By matching By matching By MS/MS By MS/MS 1 1 4 2 1.1223 1.0453 9.3909 8 Median NaN NaN NaN 0 0 Median 1.1712 1.0709 NaN 1 0 Median 0.8376 0.89799 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0482 1.0853 9.6008 4 0 Median 1.2968 1.0647 6.035 2 0 Median 25508000 12880000 12628000 0 0 0 613540 291640 321900 1567400 746350 821100 0 0 0 20319000 10559000 9759400 3008000 1282400 1725600 36815 635 38691 195083;195084;195085;195086;195087;195088;195089;195090 198440;198441;198442;198443 198442 4 VLVMLAAQSR CLELVEHFGPNELRKVLVMLAAQSRRSVPL NELRKVLVMLAAQSRRSVPLLRAISYHLVQ K V L S R R 2 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 0 2 0 0 10 0 1086.6219 Q969Z0;C9J7P5;C9IZN7 Q969Z0 261 270 TBRG4 Protein TBRG4 yes no 2 0.00056168 116.05 By MS/MS By MS/MS 1 2 1.1741 1.1078 19.677 3 Median 1.1741 1.1078 NaN 1 0 Median 1.2927 1.1213 27.809 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33615000 14932000 18683000 25915000 11465000 14450000 7700100 3466500 4233600 0 0 0 0 0 0 0 0 0 0 0 0 36816 3591 38692;38693 195091;195092;195093 198444;198445;198446 198444 1786 3 VLVNDAQK MAILQIMKELNKRGRVLVNDAQKVTEGQQE ELNKRGRVLVNDAQKVTEGQQERLERQHWT R V L Q K V 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q13263 Q13263 312 319 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0052175 77.058 By matching By MS/MS By matching By matching By MS/MS By matching 2 3 2 1 1 2 1.013 0.95967 10.115 11 Median 0.78075 0.79385 1.9497 2 0 Median 1.0986 0.95967 8.3214 3 0 Median 0.92025 0.97699 10.959 2 0 Median 1.1203 0.98244 NaN 1 0 Median 1.0016 1.0314 NaN 1 0 Median 1.1239 0.95104 7.2354 2 0 Median 20923000 10104000 10820000 1364500 712060 652480 14412000 6843700 7568400 2444900 1233300 1211500 415210 183270 231950 1871000 955690 915320 415490 175560 239940 36817 2802 38694 195094;195095;195096;195097;195098;195099;195100;195101;195102;195103;195104 198447;198448;198449;198450;198451;198452 198449 6 VLVNDAQKVTEGQQER MAILQIMKELNKRGRVLVNDAQKVTEGQQE LVNDAQKVTEGQQERLERQHWTMTKIQKHQ R V L E R L 1 1 1 1 0 3 2 1 0 0 1 1 0 0 0 0 1 0 0 3 0 0 16 1 1812.933 Q13263 Q13263 312 327 TRIM28 Transcription intermediary factor 1-beta yes yes 3 0.00021376 43.798 By MS/MS 1 1.034 1.0766 NaN 1 Median 1.034 1.0766 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7052400 3295300 3757100 7052400 3295300 3757100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36818 2802 38695 195105 198453;198454 198454 2 VLVPATDR CGNYSGAAEYLYFFRVLVPATDRNALSSLW EYLYFFRVLVPATDRNALSSLWGKLASEIL R V L D R N 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 869.49707 P60228;E5RGA2 P60228 156 163 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.0044851 81.297 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 2 3 1 0.9888 0.91982 20.97 12 Median 1.0184 1.0036 17.225 2 0 Median 0.99633 0.92512 4.2112 4 1 Median 0.77939 0.83141 14.808 2 0 Median 1.1617 1.1164 26.418 3 0 Median NaN NaN NaN 0 0 Median 0.67855 0.58196 NaN 1 0 Median 55093000 28179000 26913000 10661000 5397300 5263400 22729000 10848000 11882000 10970000 6514600 4455300 9385500 4561000 4824400 0 0 0 1347000 858320 488710 36819 2524 38696 195106;195107;195108;195109;195110;195111;195112;195113;195114;195115;195116;195117 198455;198456;198457;198458;198459;198460;198461 198455 7 VLVPGIPGHHAAIKPAPPQTEQVESK AITKVRTPVMNSEAKVLVPGIPGHHAAIKP AIKPAPPQTEQVESKRKSGGNEVSIEERLG K V L S K R 3 0 0 0 0 2 2 2 2 2 1 2 0 0 5 1 1 0 0 3 0 0 26 1 2699.4759 Q15061 Q15061 403 428 WDR43 WD repeat-containing protein 43 yes yes 3;4;5 1.8591E-10 61.801 By MS/MS By MS/MS 1 4 0.48858 0.62933 12.68 5 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3896 0.43693 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50543 0.60427 6.6038 4 3 Linear NaN NaN NaN 0 0 Median 85336000 59311000 26025000 0 0 0 0 0 0 6783700 4664400 2119300 0 0 0 78552000 54647000 23905000 0 0 0 36820 2924 38697 195118;195119;195120;195121;195122 198462;198463;198464;198465;198466 198465 4 VLVQNAAGSQEK EGILKTAKVLVEDTKVLVQNAAGSQEKLAQ DTKVLVQNAAGSQEKLAQAAQSSVATITRL K V L E K L 2 0 1 0 0 2 1 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1242.6568 Q9Y490 Q9Y490 2032 2043 TLN1 Talin-1 yes yes 2 0.00035803 96.89 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 3 1.1721 1.0532 42.583 11 Median 0.808 0.7928 16.448 2 0 Median 1.1721 1.0218 32.335 3 1 Median 1.3151 1.459 NaN 1 0 Median 1.1667 1.0532 NaN 1 0 Median 3.0628 3.2352 NaN 1 1 Median 1.2698 1.0821 6.6766 3 1 Median 18061000 8530700 9530300 2810800 1476200 1334600 9244400 4615700 4628700 1360400 586720 773700 460120 209500 250630 1649700 463080 1186600 2535600 1179600 1356000 36821 4441 38698 195123;195124;195125;195126;195127;195128;195129;195130;195131;195132;195133 198467;198468;198469;198470;198471;198472;198473;198474;198475;198476;198477;198478;198479 198469 13 VLVSGLPPSGSWQDLK RGGRNGPPTRRSDFRVLVSGLPPSGSWQDL LVSGLPPSGSWQDLKDHMREAGDVCYADVQ R V L L K D 0 0 0 1 0 1 0 2 0 0 3 1 0 0 2 3 0 1 0 2 0 0 16 0 1681.9039 Q13242 Q13242 113 128 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.0001386 60.49 By MS/MS By matching 1 1 0.89305 0.82615 1.2717 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80373 0.81875 NaN 1 0 Median 0.9923 0.83361 NaN 1 0 Median 11649000 6470000 5179200 0 0 0 0 0 0 0 0 0 0 0 0 10693000 5958600 4734400 956190 511380 444810 36822 2799 38699 195134;195135 198480;198481;198482;198483;198484;198485 198481 6 VLVSLSAGGR LEDDIRSDTSFMFQRVLVSLSAGGRDEGNY FMFQRVLVSLSAGGRDEGNYLDDALVRQDA R V L G R D 1 1 0 0 0 0 0 2 0 0 2 0 0 0 0 2 0 0 0 2 0 0 10 0 957.56073 P09525;Q6P452 P09525 151 160 ANXA4 Annexin A4;Annexin yes no 2 3.5319E-05 141.39 By MS/MS By MS/MS By matching 1 1 1 1.0891 0.99097 5.1458 3 Median 1.0587 0.99097 NaN 1 0 Median 1.2109 1.007 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0891 0.91478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29859000 13693000 16166000 17306000 8071800 9234100 12136000 5373800 6762000 0 0 0 417650 247560 170090 0 0 0 0 0 0 36823 1917 38700 195136;195137;195138 198486;198487 198486 2 VLVTGATGLLGR SCRLVEEEVNIPNRRVLVTGATGLLGRAVH NRRVLVTGATGLLGRAVHKEFQQNNWHAVG R V L G R A 1 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1155.6976 Q9NZL9;E5RJR3 Q9NZL9 31 42 MAT2B Methionine adenosyltransferase 2 subunit beta yes no 2 5.6052E-05 127.4 By MS/MS By MS/MS By MS/MS By matching By matching By matching 5 3 2 1 1 1 1.1763 1.1372 22.526 13 Median 1.1702 1.1454 9.0719 5 0 Median 1.2225 1.0543 9.6817 3 0 Median 1.0589 1.0782 7.5338 2 0 Median 1.4017 1.1843 NaN 1 0 Median 2.1151 2.2282 NaN 1 0 Median 0.99766 0.87949 NaN 1 0 Median 80961000 37513000 43448000 70657000 32825000 37832000 5326400 2281200 3045200 3720600 1956400 1764100 210770 84217 126550 945340 314440 630900 101060 51897 49167 36824 4191 38701 195139;195140;195141;195142;195143;195144;195145;195146;195147;195148;195149;195150;195151 198488;198489;198490;198491;198492 198489 5 VLVTTNVCAR QRAAVIERFREGKEKVLVTTNVCARGIDVE EGKEKVLVTTNVCARGIDVEQVSVVINFDL K V L A R G 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 3 0 0 10 0 1131.607 H3BQK0;Q9UMR2;Q9NUU7;I3L0H8;F6QDS0;I3L352 Q9NUU7 385 394 DDX19B;DDX19A ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A no no 2 0.00072039 103.74 By matching By MS/MS 1 1 1.4151 1.2991 29.922 2 Median 1.6099 1.6052 NaN 1 0 Median 1.2438 1.0514 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8403400 3352900 5050600 2154000 594040 1559900 6249400 2758800 3490600 0 0 0 0 0 0 0 0 0 0 0 0 36825 4121;1225 38702 195152;195153 198493 198493 1 VLVTVFR NSSDLSNVAVIDGNRVLVTVFRQTVVPPPM VAVIDGNRVLVTVFRQTVVPPPMCTYQLLF R V L F R Q 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 3 0 0 7 0 832.51707 O95163;F5H2T0 O95163 399 405 IKBKAP Elongator complex protein 1 yes no 2 0.022643 73.039 By MS/MS By matching 2 1 1.7001 1.4481 56.665 3 Plateau 0.94671 0.91866 71 2 1 Median 1.7001 1.4481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10422000 5597800 4824200 7041500 4253400 2788100 3380400 1344300 2036100 0 0 0 0 0 0 0 0 0 0 0 0 36826 1749 38703 195154;195155;195156 198494;198495 198494 2 VLVVGAGGIGCELLK RGLPRELAEAVAGGRVLVVGAGGIGCELLK VLVVGAGGIGCELLKNLVLTGFSHIDLIDL R V L L K N 1 0 0 0 1 0 1 4 0 1 3 1 0 0 0 0 0 0 0 3 0 0 15 0 1483.8432 Q9UBT2;K7EPL2;U3KQ55;K7ES38 Q9UBT2 20 34 UBA2 SUMO-activating enzyme subunit 2 yes no 2 3.6242E-06 89.548 By MS/MS 2 1.2895 1.1441 34.29 2 Median NaN NaN NaN 0 0 Median 1.2895 1.1441 34.29 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6172000 2946100 3225900 0 0 0 6172000 2946100 3225900 0 0 0 0 0 0 0 0 0 0 0 0 36827 4247 38704 195157;195158 198496;198497 198496 2 VLVVHDGFEGLAK AVRSTVRIGLIQGNRVLVVHDGFEGLAKGQ NRVLVVHDGFEGLAKGQIEEAGWSYVGGWT R V L A K G 1 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 0 0 0 3 0 0 13 0 1382.7558 A0A2R8Y891;P08237;F8VZI0;F8VP00 A0A2R8Y891 536 548 PFKM ATP-dependent 6-phosphofructokinase, muscle type yes no 3 0.00018804 67.456 By MS/MS By matching 1 1 1.2765 1.151 21.699 2 Median 1.0769 0.98726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.513 1.3419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8081600 3695900 4385800 7833200 3552900 4280300 0 0 0 0 0 0 248410 142950 105460 0 0 0 0 0 0 36828 390 38705 195159;195160 198498 198498 1 VLVVVTDGR KVLTWESGMRKNVPKVLVVVTDGRSQDEVK RKNVPKVLVVVTDGRSQDEVKKAALVIQHS K V L G R S 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 4 0 0 9 0 956.56548 A0A087X0A8;D6RGG3;Q99715;H0Y5N9 A0A087X0A8 1239 1247 COL12A1 Collagen alpha-1(XII) chain yes no 2 0.015787 43.246 By matching By matching By MS/MS By matching 1 1 1 2 1.0111 1.2739 22.493 5 Linear 1.0467 1.0429 NaN 1 0 Median 1.6945 1.4513 NaN 1 0 Median 0.83707 0.89612 NaN 1 0 Median 1.0038 0.8543 1.626 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6135500 3126800 3008700 1610800 842130 768660 2103700 833130 1270600 1252900 791430 461510 1168100 660100 507970 0 0 0 0 0 0 36829 102 38706 195161;195162;195163;195164;195165 198499 198499 1 VLVWDLR SVSGDRLIVGTAGRRVLVWDLRNMGYVQQR IVGTAGRRVLVWDLRNMGYVQQRRESSLKY R V L L R N 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 7 0 899.52289 O43684;J3QT28 O43684 159 165 BUB3 Mitotic checkpoint protein BUB3 yes no 2 0.015644 70.912 By matching By MS/MS By matching By matching 3 3 2 2 1.1699 1.0451 16.907 10 Median NaN NaN NaN 0 0 Median 1.4811 1.2704 14.318 3 0 Median 1.0856 1.1562 11.243 3 0 Plateau 1.2494 1.0388 2.2165 2 0 Median NaN NaN NaN 0 0 Median 0.97771 0.81666 7.8944 2 0 Median 56003000 25264000 30739000 0 0 0 2832300 1213400 1619000 45072000 20433000 24639000 6616100 2838000 3778100 0 0 0 1482700 779980 702720 36830 1357 38707 195166;195167;195168;195169;195170;195171;195172;195173;195174;195175 198500;198501;198502;198503;198504;198505;198506 198501 7 VLVYELLLGK GLLRAEKKLRPHLAKVLVYELLLGKGFRGG PHLAKVLVYELLLGKGFRGGGGRWKALLGR K V L G K G 0 0 0 0 0 0 1 1 0 0 4 1 0 0 0 0 0 0 1 2 0 0 10 0 1145.706 Q96P11 Q96P11 73 82 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.00037242 81.296 By MS/MS 1 1.1432 1.0196 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1432 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2273300 1532900 740370 0 0 0 0 0 0 0 0 0 2273300 1532900 740370 0 0 0 0 0 0 36831 3708 38708 195176 198507;198508 198507 2 VLVYNNTSIVQDEILAHR RRILLAEVPTMAVEKVLVYNNTSIVQDEIL YNNTSIVQDEILAHRLGLIPIHADPRLFEY K V L H R L 1 1 2 1 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 3 0 0 18 0 2083.1062 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8YEY5;A0A2R8Y8D6;H0Y723;D6RDJ3 O15160 92 109 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 3 3.0851E-13 136.01 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 1 1 1 1.0148 1.0088 16.287 7 Median 1.1183 1.1134 NaN 1 0 Median 1.0148 0.8704 NaN 1 0 Median 0.95985 0.99759 17.095 2 0 Median 1.4082 1.2184 NaN 1 0 Median 0.94664 1.0088 NaN 1 0 Median 0.90785 0.78137 NaN 1 0 Median 103610000 49890000 53723000 9923300 4594900 5328400 2116100 1026700 1089400 84681000 40931000 43750000 2713000 1181000 1532000 3319600 1723300 1596200 859230 432770 426460 36832 1528 38709 195177;195178;195179;195180;195181;195182;195183 198509;198510;198511;198512;198513 198511 5 VLWLSGLSEPGAAR ______________________________ RVLWLSGLSEPGAARQPRIMEEKALEVYDL R V L A R Q 2 1 0 0 0 0 1 2 0 0 3 0 0 0 1 2 0 1 0 1 0 0 14 0 1454.7882 Q9H5X1;H0YLH6;H0YKV4 Q9H5X1 15 28 FAM96A MIP18 family protein FAM96A yes no 2 0.00033438 73.067 By MS/MS By matching 1 1 0.96876 0.8949 13.789 2 Median 0.98348 0.98655 NaN 1 0 Median 0.95425 0.81176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2354800 1205600 1149100 2146000 1108800 1037100 208790 96791 112000 0 0 0 0 0 0 0 0 0 0 0 0 36833 3971 38710 195184;195185 198514;198515 198515 2 VLYAVFSR GTCLAASVAAPGSGRVLYAVFSRDSRSSGG AAPGSGRVLYAVFSRDSRSSGGPGAGLCLF R V L S R D 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 2 0 0 8 0 953.53345 O15031;E2PU09 O15031 292 299 PLXNB2 Plexin-B2 yes no 2 0.027942 40.778 By MS/MS By matching By matching By matching 1 2 1 1 1.1892 1.0498 26.192 5 Median 1.0657 1.0109 NaN 1 0 Median 1.193 1.0545 0.63121 2 0 Median 1.4662 1.6721 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74864 0.81658 NaN 1 0 Median NaN NaN NaN 0 0 Median 9372700 4304400 5068300 5746900 2775000 2971900 1150700 449510 701150 1634600 630480 1004200 0 0 0 840470 449350 391120 0 0 0 36834 1514 38711 195186;195187;195188;195189;195190 198516 198516 1 VLYAYGYYTGEPSK PRIASGLGLAWIVGRVLYAYGYYTGEPSKR RVLYAYGYYTGEPSKRSRGALGSIALLGLV R V L S K R 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 14 0 1609.7664 O14880;Q5VV89 O14880 98 111 MGST3 Microsomal glutathione S-transferase 3 yes no 2 1.737E-07 113.63 By MS/MS By matching By MS/MS 3 3 1 0.94458 0.89705 22.01 7 Median 0.7465 0.70506 13.114 3 2 Median 1.3413 1.1693 16.056 3 0 Median 0.94458 0.90794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44435000 24689000 19746000 28619000 17296000 11323000 8996000 4207700 4788300 6819800 3185300 3634500 0 0 0 0 0 0 0 0 0 36835 1500 38712 195191;195192;195193;195194;195195;195196;195197 198517;198518;198519;198520 198518 4 VLYAYGYYTGEPSKR PRIASGLGLAWIVGRVLYAYGYYTGEPSKR VLYAYGYYTGEPSKRSRGALGSIALLGLVG R V L K R S 1 1 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 15 1 1765.8675 O14880;Q5VV89 O14880 98 112 MGST3 Microsomal glutathione S-transferase 3 yes no 2;3 3.3457E-09 101.95 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 3 2 1 1 1 0.81066 0.75611 38.549 11 Median 0.71595 0.706 9.4938 3 2 Median 1.5778 1.393 29.628 3 0 Median 0.51424 0.53549 29.033 2 1 Median 0.88649 0.75611 NaN 1 0 Median 0.62068 0.64184 NaN 1 0 Median 0.9943 0.79554 NaN 1 0 Median 83286000 43871000 39415000 43119000 25868000 17251000 27254000 10326000 16928000 7975200 4804500 3170700 316600 173120 143480 4344000 2598000 1746000 277340 101540 175800 36836 1500 38713 195198;195199;195200;195201;195202;195203;195204;195205;195206;195207;195208 198521;198522;198523;198524;198525;198526;198527;198528 198528 7 VLYDAEISQIHQSVTDTNVILSMDNSR QSKVDLLNQEIEFLKVLYDAEISQIHQSVT SVTDTNVILSMDNSRNLDLDSIIAEVKAQY K V L S R N 1 1 2 3 0 2 1 0 1 3 2 0 1 0 0 4 2 0 1 3 0 0 27 0 3047.487 CON__P35908;CON__P35908v2;P35908 CON__P35908 321 347 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 1.5711E-22 90.633 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 0.083852 0.083984 94.559 6 Median 0.051015 0.048878 80.11 2 2 Median 0.043383 0.037075 NaN 1 1 Median 0.19571 0.20921 95.357 2 2 Median NaN NaN NaN 0 0 Median 0.078936 0.081896 NaN 1 1 Median NaN NaN NaN 0 0 Median 48989000 47704000 1285600 24927000 24501000 426030 11476000 11446000 30233 4902000 4257200 644830 0 0 0 7684100 7499600 184510 0 0 0 + 36837 764;765 38714 195209;195210;195211;195212;195213;195214;195215;195216;195217;195218;195219;195220 198529;198530;198531;198532;198533;198534;198535;198536;198537;198538;198539;198540;198541 198530 13 VLYDFVMDDTISPYSR AEYYDNLPHYNSWIKVLYDFVMDDTISPYS LYDFVMDDTISPYSRMKRHQKGEMVLE___ K V L S R M 0 1 0 3 0 0 0 0 0 1 1 0 1 1 1 2 1 0 2 2 0 0 16 0 1919.8975 O15121 O15121 296 311 DEGS1 Sphingolipid delta(4)-desaturase DES1 yes yes 2 0.0017019 38.021 By MS/MS By matching 1 1 0.83991 0.78276 13.03 2 Median 0.70559 0.71386 NaN 1 0 Median 0.9998 0.8583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2608900 1545600 1063300 2089000 1281600 807460 519920 264090 255840 0 0 0 0 0 0 0 0 0 0 0 0 36838 1521 38715 195221;195222 198542 198542 1 VLYLLSQLQQSQMAEK LQAELVRMEQQHQEKVLYLLSQLQQSQMAE LYLLSQLQQSQMAEKQLEESVSEKEQQLLS K V L E K Q 1 0 0 0 0 4 1 0 0 0 4 1 1 0 0 2 0 0 1 1 0 0 16 0 1877.9921 O95239 O95239 931 946 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0043619 34.378 By MS/MS By MS/MS By matching 1 2 1 1.1659 1.0909 8.2543 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0544 1.1282 NaN 1 0 Median 1.1683 1.016 5.3127 2 0 Median 1.1664 1.1829 NaN 1 0 Median NaN NaN NaN 0 0 Median 9792600 4563900 5228700 0 0 0 0 0 0 8389600 3950000 4439600 1111900 487910 623950 291200 126010 165190 0 0 0 36839 1757 38716 195223;195224;195225;195226 198543;198544;198545 198543 3 VLYNDLGAQVTEGKQDLER TDNPKGMDEQLTSLKVLYNDLGAQVTEGKQ DLGAQVTEGKQDLERASQLARKMKKEAASL K V L E R A 1 1 1 2 0 2 2 2 0 0 3 1 0 0 0 0 1 0 1 2 0 0 19 1 2147.0859 P46939 P46939 1523 1541 UTRN Utrophin yes yes 3 6.2179E-10 88.176 By MS/MS By matching By matching 1 1 1 0.95936 1.0159 1.2421 3 Median 0.95936 1.0028 NaN 1 0 Median 1.0473 1.0159 NaN 1 0 Median 0.88935 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23839000 12014000 11825000 20021000 10074000 9946900 1360400 642350 718010 2457300 1297400 1159900 0 0 0 0 0 0 0 0 0 36840 2349 38717 195227;195228;195229 198546;198547 198547 2 VLYNLFTK RPEDIVNCDLKSTLRVLYNLFTKYRNVE__ DLKSTLRVLYNLFTKYRNVE__________ R V L T K Y 0 0 1 0 0 0 0 0 0 0 2 1 0 1 0 0 1 0 1 1 0 0 8 0 996.56442 Q9HBI1;A0A087WZB5;Q9NVD7 Q9NVD7 360 367 PARVB;PARVA Beta-parvin;Alpha-parvin no no 2 0.0080329 64.567 By MS/MS By MS/MS By matching By matching By matching 2 4 1 3 1 1.0414 1.0282 23.227 11 Median 1.1674 1.1202 21.533 2 0 Median NaN NaN NaN 0 0 Median 1.011 1.0167 30.074 4 0 Median 1.1357 0.94653 NaN 1 0 Median 1.0414 1.0732 17.789 3 0 Median 0.9739 0.82988 NaN 1 0 Median 25941000 12442000 13499000 4489000 2210800 2278200 0 0 0 18887000 9068500 9818300 93980 42084 51896 2362900 1057600 1305200 108580 63487 45091 36841 4127;4019 38718 195230;195231;195232;195233;195234;195235;195236;195237;195238;195239;195240 198548;198549;198550;198551;198552 198551 5 VLYPNDNFFEGK IQAVLDRNLAENISRVLYPNDNFFEGKELR ISRVLYPNDNFFEGKELRLKQEYFVVAATL R V L G K E 0 0 2 1 0 0 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 12 0 1441.6878 P06737;E9PK47;P11216;P11217 P06737 279 290 PYGL;PYGB;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form no no 2 4.1172E-06 116.3 By MS/MS By MS/MS 3 1 0.94945 0.95094 31.852 4 Median 0.96022 0.92399 34.892 3 1 Median NaN NaN NaN 0 0 Median 0.93879 1.0344 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41409000 21633000 19776000 35931000 18938000 16993000 0 0 0 5478200 2694900 2783400 0 0 0 0 0 0 0 0 0 36842 1874;1956;1957 38719 195241;195242;195243;195244 198553;198554;198555;198556;198557;198558 198554 6 VLYQVEGFVDKNNDLLYR SLPHSCFRIQHYAGKVLYQVEGFVDKNNDL QVEGFVDKNNDLLYRDLSQAMWKASHALIK K V L Y R D 0 1 2 2 0 1 1 1 0 0 3 1 0 1 0 0 0 0 2 3 0 0 18 1 2184.1215 E9PDF6;O43795;A0A0U1RRI3 E9PDF6 519 536 MYO1B Unconventional myosin-Ib yes no 3 0.00024031 48.907 By MS/MS 1 1.3185 1.4932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3185 1.4932 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4375400 2118600 2256700 0 0 0 0 0 0 4375400 2118600 2256700 0 0 0 0 0 0 0 0 0 36843 914 38720 195245 198559 198559 1 VLYSNMLGEENTYLWR SMQGLCKFGFYEVFKVLYSNMLGEENTYLW LYSNMLGEENTYLWRTSLYLAASASAEFFA K V L W R T 0 1 2 0 0 0 2 1 0 0 3 0 1 0 0 1 1 1 2 1 0 0 16 0 1986.9509 Q00325;F8VVM2 Q00325 146 161 SLC25A3 Phosphate carrier protein, mitochondrial yes no 2 0.00013301 53.569 By MS/MS By matching By MS/MS 2 1 1 1.0984 1.0664 18.906 4 Median 1.0422 1.031 6.5102 2 0 Median 1.6926 1.5034 NaN 1 0 Median 1.0806 1.0534 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6313200 3023800 3289400 3944900 1900700 2044200 287210 124140 163060 2081100 998950 1082100 0 0 0 0 0 0 0 0 0 36844 2674 38721 195246;195247;195248;195249 198560;198561;198562 198562 3 VLYVGGLAEEVDDK ______________________________ RVLYVGGLAEEVDDKVLHAAFIPFGDITDI R V L D K V 1 0 0 2 0 0 2 2 0 0 2 1 0 0 0 0 0 0 1 3 0 0 14 0 1505.7613 Q9UNP9;E9PEQ6;E9PK21 Q9UNP9 7 20 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 2 1.4713E-06 97.214 By MS/MS By matching 1 2 1.0245 0.90332 15.813 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0245 0.98557 NaN 1 0 Median 0.9613 0.80934 15.536 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9547200 4419800 5127500 0 0 0 0 0 0 9146100 4215700 4930300 401160 204040 197120 0 0 0 0 0 0 36845 4347 38722 195250;195251;195252 198563;198564 198564 2 VLYVQDSLEGEAR KRYFYFYNTGLQNQRVLYVQDSLEGEARVF QRVLYVQDSLEGEARVFLDPNILSDDGTVA R V L A R V 1 1 0 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1477.7413 A0A499FJL1;P48147 A0A499FJL1 33 45 PREP Prolyl endopeptidase yes no 2 2.0352E-06 148.32 By MS/MS By matching 1 2 0.90679 0.8577 40.768 3 Median 0.90679 0.8577 NaN 1 0 Median 0.81465 0.7051 55.391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25128000 12500000 12628000 18928000 9336000 9591500 6200500 3164000 3036600 0 0 0 0 0 0 0 0 0 0 0 0 36846 478 38723 195253;195254;195255 198565;198566;198567;198568 198565 4 VLYVYDMLAGK SANGEEVLATSTHSKVLYVYDMLAGKLIPV THSKVLYVYDMLAGKLIPVHQVRGLKEKIV K V L G K L 1 0 0 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 2 2 0 0 11 0 1270.6631 Q9Y5J1;J3KSR7 Q9Y5J1 319 329 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes no 2 0.0014477 58.981 By matching By matching By matching By matching By MS/MS By matching 1 1 1 1 3 1 1.0935 1.1055 18.658 8 Median 0.6962 0.70646 NaN 1 0 Median 0.92413 0.8103 NaN 1 0 Median 1.0638 1.135 NaN 1 0 Median 1.0943 0.9352 NaN 1 0 Median 1.2163 1.1341 1.5155 3 0 Plateau 1.2745 1.0861 NaN 1 0 Median 13403000 6474600 6928700 936030 565020 371010 2339200 1671000 668190 680300 365000 315300 336810 156990 179820 8658100 3510200 5147900 452850 206400 246450 36847 4458 38724 195256;195257;195258;195259;195260;195261;195262;195263 198569;198570 198569 2 VLYYSATK EIPRVLEQLEDLDSRVLYYSATKNGILYRV LEDLDSRVLYYSATKNGILYRVGDGVYLPP R V L T K N 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 2 1 0 0 8 0 943.50148 P26358 P26358 921 928 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.0038087 85.212 By matching By MS/MS By MS/MS 1 2 2 0.92854 0.92474 6.4599 4 Median 0.86077 0.83038 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86331 0.95547 NaN 1 0 Median 1.0614 0.92474 3.5646 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19502000 7657700 11844000 5436100 2394800 3041300 0 0 0 9059000 2743200 6315800 5006700 2519600 2487100 0 0 0 0 0 0 36848 2142 38725 195264;195265;195266;195267;195268 198571;198572;198573;198574 198571 4 VLYYTGR ISAHIDSGKTTLTERVLYYTGRIAKMHEVK GKTTLTERVLYYTGRIAKMHEVKGKDGVGA R V L G R I 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 2 1 0 0 7 0 870.45995 Q96RP9;F8WAU4;C9IZ01 Q96RP9 66 72 GFM1 Elongation factor G, mitochondrial yes no 2 0.021555 58.981 By MS/MS By MS/MS 1 1 1.1796 1.0903 2.336 2 Median 1.1253 1.1084 NaN 1 0 Median 1.2365 1.0724 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4862300 2126400 2735900 2276600 947350 1329200 2585800 1179100 1406700 0 0 0 0 0 0 0 0 0 0 0 0 36849 3728 38726 195269;195270 198575;198576 198575 2 VMAAENIPENPLK ELSAVTFPDIIRNYKVMAAENIPENPLKYL YKVMAAENIPENPLKYLYPNIDKDHAFGKY K V M L K Y 2 0 2 0 0 0 2 0 0 1 1 1 1 0 2 0 0 0 0 1 0 0 13 0 1424.7334 P42224;J3KPM9 P42224 653 665 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2 1.2317E-06 129.16 By MS/MS 1 0.79954 0.72067 NaN 1 Median 0.79954 0.72067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14952000 8224900 6727400 14952000 8224900 6727400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36850 2308 38727 195271 198577;198578 198577 2 VMAEGTAVLR ______________________________ ______________________________ M V M L R R 2 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 2 0 0 10 0 1045.559 Q9Y3A3;F8WAQ8;F8W8B0 Q9Y3A3 2 11 MOB4 MOB-like protein phocein yes no 2 0.00036424 115.49 By MS/MS By MS/MS 2 1 1.0825 0.96854 3.1369 2 Median 1.0464 0.99026 NaN 1 1 Median 1.1198 0.94729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11045000 5480300 5564200 7453700 3681500 3772200 3590800 1798800 1792000 0 0 0 0 0 0 0 0 0 0 0 0 36851 4411 38728 195272;195273;195274 198579;198580;198581;198582 198580 4 VMAEGTAVLRR ______________________________ ______________________________ M V M R R N 2 2 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 2 0 0 11 1 1201.6601 Q9Y3A3;F8WAQ8;F8W8B0 Q9Y3A3 2 12 MOB4 MOB-like protein phocein yes no 3 0.058537 17.739 By MS/MS By matching 1 1 1.0453 0.99598 4.0371 2 Median 0.90553 0.96795 NaN 1 0 Median 1.2067 1.0248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3053500 1553500 1499900 1845400 1034700 810680 1208100 518840 689270 0 0 0 0 0 0 0 0 0 0 0 0 36852 4411 38729 195275;195276 198583 198583 0 VMAGALEGDLFIGPK KYCFPNYVGRPKHMRVMAGALEGDLFIGPK VMAGALEGDLFIGPKAEEHRGLLTIRYPME R V M P K A 2 0 0 1 0 0 1 3 0 1 2 1 1 1 1 0 0 0 0 1 0 0 15 0 1516.796 P42025 P42025 47 61 ACTR1B Beta-centractin yes yes 2 1.6198E-09 104.52 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0176 0.91104 12.529 5 Median 1.0176 0.94401 NaN 1 0 Median 1.0689 0.91104 NaN 1 0 Median 0.84201 0.86971 NaN 1 0 Median 1.1149 0.94833 NaN 1 0 Median 0.71081 0.70113 NaN 1 0 Median NaN NaN NaN 0 0 Median 47412000 23679000 23732000 11452000 5608900 5843400 10226000 4962900 5263400 17254000 9212800 8041400 7570800 3338500 4232200 907970 556260 351710 0 0 0 36853 2304 38730 195277;195278;195279;195280;195281 198584;198585;198586;198587;198588;198589;198590;198591;198592;198593 198591 10 VMAGSLLLDKR QFVYKLADQIFAYYKVMAGSLLLDKRLRSE AYYKVMAGSLLLDKRLRSECKNQGATIHLP K V M K R L 1 1 0 1 0 0 0 1 0 0 3 1 1 0 0 1 0 0 0 1 0 0 11 1 1201.6853 Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 716 726 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 3 0.0024071 38.634 By MS/MS 1 1.1874 1.346 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1874 1.346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3795800 1742200 2053600 0 0 0 0 0 0 3795800 1742200 2053600 0 0 0 0 0 0 0 0 0 36854 3224 38731 195282 198594 198594 1 VMAQGSIGVAPGMNR PIAKAKMVALKGIKKVMAQGSIGVAPGMNR VMAQGSIGVAPGMNRQQVSLLAQRLSGGPS K V M N R Q 2 1 1 0 0 1 0 3 0 1 0 0 2 0 1 1 0 0 0 2 0 0 15 0 1486.7385 O14686 O14686 3438 3452 KMT2D Histone-lysine N-methyltransferase 2D yes yes 2 7.2774E-08 101.93 By MS/MS By MS/MS 1 1 1.9224 1.8404 83.497 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96971 1.0198 NaN 1 1 Median 3.8112 3.3214 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23192000 9427000 13765000 0 0 0 0 0 0 16990000 8546300 8444200 6201800 880720 5321000 0 0 0 0 0 0 36855 1490 38732 195283;195284 198595;198596 198595 2 VMASMFYEVSTR MMVQKERSLDILKGKVMASMFYEVSTRTSS KGKVMASMFYEVSTRTSSSFAAAMARLGGA K V M T R T 1 1 0 0 0 0 1 0 0 0 0 0 2 1 0 2 1 0 1 2 0 0 12 0 1419.6527 F8VPD4;P27708 F8VPD4 1901 1912 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 7.3482E-06 120.68 By MS/MS By matching 2 1 1.0817 1.1744 12.792 3 Plateau 1.1379 1.1129 7.599 2 0 Median 1.0817 0.91022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11913000 5132900 6779800 9960000 4224500 5735500 1952700 908450 1044200 0 0 0 0 0 0 0 0 0 0 0 0 36856 1057 38733 195285;195286;195287 198597;198598;198599 198598 2 VMATTGGTNLR SQICIQVSKHMGGAKVMATTGGTNLRDDIM GGAKVMATTGGTNLRDDIMRLDDTVHVVIA K V M L R D 1 1 1 0 0 0 0 2 0 0 1 0 1 0 0 0 3 0 0 1 0 0 11 0 1119.5706 P26196 P26196 196 206 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.00079384 87.308 By MS/MS By MS/MS By MS/MS 1 1 1 1.1347 0.9699 10.136 3 Median NaN NaN NaN 0 0 Median 1.1347 0.9699 NaN 1 1 Median 0.82609 0.87172 NaN 1 0 Median 1.2266 1.0675 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4814200 2338700 2475500 0 0 0 3134100 1585900 1548200 1174000 549210 624760 506120 203530 302600 0 0 0 0 0 0 36857 2140 38734 195288;195289;195290 198600;198601;198602 198601 3 VMATTGGTNLRDDIMR SQICIQVSKHMGGAKVMATTGGTNLRDDIM MATTGGTNLRDDIMRLDDTVHVVIATPGRI K V M M R L 1 2 1 2 0 0 0 2 0 1 1 0 2 0 0 0 3 0 0 1 0 0 16 1 1749.8502 P26196 P26196 196 211 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2;3 4.3903E-05 58.885 By matching By MS/MS By MS/MS 1 2 1 1.0452 1.0363 6.9938 4 Linear 1.0448 1.0551 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91274 0.98582 10.739 2 0 Median NaN NaN NaN 0 0 Median 0.94528 1.0177 NaN 1 0 Median NaN NaN NaN 0 0 Median 49426000 24974000 24452000 25236000 12534000 12702000 0 0 0 18494000 9131800 9362000 0 0 0 5696500 3308200 2388300 0 0 0 36858 2140 38735 195291;195292;195293;195294 198603;198604;198605;198606;198607 198604 5 VMDDLDR WQKDELRETLKSLKKVMDDLDRASKADVQK ETLKSLKKVMDDLDRASKADVQKRVLEKTK K V M D R A 0 1 0 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 862.38547 P49588 P49588 825 831 AARS Alanine--tRNA ligase, cytoplasmic yes yes 2 0.031276 49.358 By MS/MS By MS/MS 3 2 1.084 1.0482 23.415 5 Median 1.084 1.0482 29.051 3 0 Median 1.1406 0.99603 7.2605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22302000 9938200 12364000 6024500 2700800 3323700 16278000 7237400 9040200 0 0 0 0 0 0 0 0 0 0 0 0 36859 2385 38736 195295;195296;195297;195298;195299 198608;198609;198610 198609 3 VMDEVEK VEQLGAEGNVEESQKVMDEVEKARAKKREA GNVEESQKVMDEVEKARAKKREAEEVYRNS K V M E K A 0 0 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 2 0 0 7 0 848.39497 A0A0A6YYJ8;Q9Y383 A0A0A6YYJ8 221 227 LUC7L2 Putative RNA-binding protein Luc7-like 2 no no 2 0.018506 62.659 By matching By MS/MS By matching By MS/MS By matching 1 1 1 3 1 0.86515 0.92112 17.046 7 Median 0.94575 0.92658 NaN 1 0 Median 0.83619 0.71456 NaN 1 0 Median 0.57341 0.61541 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86515 0.92112 10.721 3 0 Median 1.1526 0.96149 NaN 1 0 Median 10816000 5453300 5362400 945200 468640 476560 2964800 1625800 1339000 168710 108930 59786 0 0 0 6207100 2986400 3220700 529790 263530 266260 36860 206;4407 38737 195300;195301;195302;195303;195304;195305;195306 198611;198612;198613;198614 198612 4 VMDIPYLNLEGPDLQPK SKLIEPFFNKLFLMRVMDIPYLNLEGPDLQ DIPYLNLEGPDLQPKRDHVLHVTFPKEWKT R V M P K R 0 0 1 2 0 1 1 1 0 1 3 1 1 0 3 0 0 0 1 1 0 0 17 0 1940.9918 A0A494C1G3;A0A494BZU6;A0A494BZW7;A0A494C0P9;A0A494C1K5;A0A494C0Q2;A0A494C1N1;A0A494C0K5;A0A494C0W0;O95453 A0A494C1G3 354 370 PARN Poly(A)-specific ribonuclease PARN yes no 2 0.040086 22.533 By matching By MS/MS 1 1 0.73264 0.69622 14.832 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71457 0.6269 NaN 1 0 Median 0.75117 0.7732 NaN 1 0 Median NaN NaN NaN 0 0 Median 1845600 921630 923960 0 0 0 0 0 0 0 0 0 83351 56819 26532 1762200 864810 897420 0 0 0 36861 452 38738 195307;195308 198615 198615 1 VMDYHFTTAEASTQDPR ISDRGGGIAHKDLDRVMDYHFTTAEASTQD DYHFTTAEASTQDPRISPLFGHLDMHSGAQ R V M P R I 2 1 0 2 0 1 1 0 1 0 0 0 1 1 1 1 3 0 1 1 0 0 17 0 1967.8683 O14874;H3BUV3 O14874 328 344 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes no 3 6.4365E-06 74.141 By matching By matching By MS/MS By MS/MS 1 1 2 1 1.0665 1.0243 6.2609 5 Median 1.0665 1.0498 NaN 1 0 Median 1.0945 1.0024 NaN 1 0 Median 0.87838 0.96077 9.0586 2 0 Median 1.2024 1.0452 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57986000 29629000 28356000 2296400 1146800 1149500 570640 250980 319660 52709000 27182000 25527000 2409100 1049600 1359500 0 0 0 0 0 0 36862 1499 38739;38740 195309;195310;195311;195312;195313 198616;198617;198618 198617 483 3 VMEAFEQAER DEEQEKAWRKQSRRKVMEAFEQAERKPKPN QSRRKVMEAFEQAERKPKPNPNLLFSDVYQ K V M E R K 2 1 0 0 0 1 3 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 10 0 1208.5496 F5H5P2;P12694 F5H5P2 424 433 BCKDHA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial yes no 2 0.0004183 113.71 By MS/MS By MS/MS 1 1 0.77416 0.71916 13.912 2 Median 0.65336 0.65178 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9173 0.7935 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9407000 5158400 4248600 3322400 1750300 1572100 0 0 0 0 0 0 6084600 3408000 2676500 0 0 0 0 0 0 36863 1037 38741 195314;195315 198619;198620;198621 198619 3 VMEETLSYLLGR KYFSMTEVDRLGIGKVMEETLSYLLGRKKR IGKVMEETLSYLLGRKKRPIHLSFDVDGLD K V M G R K 0 1 0 0 0 0 2 1 0 0 3 0 1 0 0 1 1 0 1 1 0 0 12 0 1409.7225 P05089 P05089 211 222 ARG1 Arginase-1 yes yes 2 0.0013313 82.749 By MS/MS By MS/MS 2 1 1.4299 1.0683 126.98 3 Median NaN NaN NaN 0 0 Median 1.1484 0.97242 179.41 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4299 1.0683 NaN 1 1 Median 6991300 2807700 4183600 0 0 0 3295500 1299400 1996100 0 0 0 0 0 0 0 0 0 3695800 1508300 2187500 36864 1859 38742 195316;195317;195318 198622;198623;198624 198624 3 VMEGTVAAQDEFYR TSDADGLCTRLIKPKVMEGTVAAQDEFYRS KVMEGTVAAQDEFYRSGWALNMKELKLLQT K V M Y R S 2 1 0 1 0 1 2 1 0 0 0 0 1 1 0 0 1 0 1 2 0 0 14 0 1614.7348 P41240 P41240 172 185 CSK Tyrosine-protein kinase CSK yes yes 2 6.9068E-08 166.97 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.1657 1.1111 16.93 6 Median 1.1942 1.1539 NaN 1 0 Median 1.2773 1.1138 NaN 1 0 Median 1.1279 1.1125 0.63013 2 0 Median 1.0439 0.90634 28.464 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43199000 18739000 24460000 7866900 3643900 4223000 1036000 451390 584650 24630000 10683000 13947000 8504700 3960300 4544400 1160500 0 1160500 0 0 0 36865 2300 38743;38744 195319;195320;195321;195322;195323;195324;195325 198625;198626;198627;198628;198629;198630;198631;198632;198633 198628 1049 9 VMEHFIK TNGDTHLGGEDFDQRVMEHFIKLYKKKTGK GGEDFDQRVMEHFIKLYKKKTGKDVRKDNR R V M I K L 0 0 0 0 0 0 1 0 1 1 0 1 1 1 0 0 0 0 0 1 0 0 7 0 902.46841 P11021 P11021 262 268 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.012264 78.616 By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1.2731 1.1364 10.561 8 Median 1.226 1.1268 9.0767 2 0 Median 1.3413 1.1117 4.1516 3 1 Plateau 1.1983 1.2341 NaN 1 0 Median 1.4399 1.2416 21.594 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 129700000 56437000 73260000 27761000 12551000 15210000 91553000 39493000 52059000 7773200 3260300 4512800 2610400 1132600 1477700 0 0 0 0 0 0 36866 1948 38745;38746 195326;195327;195328;195329;195330;195331;195332;195333 198634;198635;198636;198637;198638;198639;198640;198641 198635 725 8 VMEIVDADEK ASITSEVFNKFFKERVMEIVDADEKVRHSK FFKERVMEIVDADEKVRHSKLAESVEKAIE R V M E K V 1 0 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1147.5431 Q9Y5B9 Q9Y5B9 202 211 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00034968 84.213 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0769 0.90655 31.057 5 Median 0.65815 0.62335 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3483 1.4691 NaN 1 0 Median 1.22 1.0517 NaN 1 0 Median 0.838 0.88093 NaN 1 1 Median 1.0769 0.90655 NaN 1 0 Median 14887000 7123000 7764300 2386100 1261900 1124200 0 0 0 2600800 1314500 1286300 4304600 1772500 2532200 3657600 1905200 1752300 1938100 868880 1069300 36867 4456 38747 195334;195335;195336;195337;195338 198642;198643;198644;198645;198646 198644 5 VMEIVDADEKVR ASITSEVFNKFFKERVMEIVDADEKVRHSK KERVMEIVDADEKVRHSKLAESVEKAIEEK R V M V R H 1 1 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 3 0 0 12 1 1402.7126 Q9Y5B9 Q9Y5B9 202 213 SUPT16H FACT complex subunit SPT16 yes yes 2;3 1.3785E-06 116.52 By MS/MS By matching By matching By matching By MS/MS By MS/MS 5 1 1 1 4 2 0.86564 0.91756 31.263 14 Median 0.81104 0.83566 18.809 5 1 Median 0.65105 0.55173 NaN 1 0 Median 1.1024 1.2759 NaN 1 0 Median 1.3965 1.1987 NaN 1 0 Median 0.88075 0.9968 26.624 4 0 Median 0.77525 0.67434 53.121 2 0 Median 64463000 32299000 32165000 27343000 14400000 12943000 3420300 1905000 1515300 4609600 2125600 2484000 2631700 685530 1946100 22233000 11157000 11076000 4226000 2025800 2200200 36868 4456 38748 195339;195340;195341;195342;195343;195344;195345;195346;195347;195348;195349;195350;195351;195352 198647;198648;198649;198650;198651;198652;198653;198654;198655;198656;198657;198658 198647 12 VMEKPSPLLVGR ______________________________ ______________________________ M V M G R E 0 1 0 0 0 0 1 1 0 0 2 1 1 0 2 1 0 0 0 2 0 0 12 1 1324.7537 Q13283;E5RIZ6;E5RIF8;E5RH42;E5RJU8;E5RI46;E5RH00;D6R9X5;D6R9A4;Q9UN86;D6RAC7;D6RB17;D6RGJ4;D6RBM9;D6REX8;D6RBR0;D6RE13;D6RBW8 Q13283 2 13 G3BP1;G3BP2 Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2 no no 2;3 1.3986E-06 123.86 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 7 0.84201 0.77204 19.902 15 Median 0.88431 0.88795 3.1647 3 0 Median 0.73299 0.66962 11.167 4 0 Median 0.93777 1.0522 NaN 1 0 Median 0.84201 0.77204 19.243 7 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130440000 68641000 61800000 76556000 39334000 37222000 24721000 13624000 11097000 11854000 6317300 5536700 17309000 9364700 7944500 0 0 0 0 0 0 36869 2803;4341 38749;38750 195353;195354;195355;195356;195357;195358;195359;195360;195361;195362;195363;195364;195365;195366;195367 198659;198660;198661;198662;198663;198664;198665;198666;198667;198668;198669;198670;198671;198672;198673;198674;198675 198665 1505 17 VMELLVHLNKR VLLKLSSTQEGVRKKVMELLVHLNKRIKSR VRKKVMELLVHLNKRIKSRPKIQLPVETLL K V M K R I 0 1 1 0 0 0 1 0 1 0 3 1 1 0 0 0 0 0 0 2 0 0 11 1 1350.7806 Q5VYK3;J3KN16;R4GMY1;R4GMY3 Q5VYK3 58 68 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 3 4.8194E-05 103.26 By MS/MS By MS/MS 1 1 1.2087 1.1829 2.7524 2 Median 1.2016 1.2062 NaN 1 0 Median 1.2159 1.1601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14972000 6042900 8929500 13104000 5365600 7738000 1868700 677270 1191500 0 0 0 0 0 0 0 0 0 0 0 0 36870 3116 38751 195368;195369 198676;198677;198678 198677 3 VMENSSGTPDILTR MSRSNVQPTAAPGQKVMENSSGTPDILTRH KVMENSSGTPDILTRHFTIDDFEIGRPLGK K V M T R H 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1518.7348 Q96GD4;J3QLN8;J3QR41;J3KTD6;J3KRJ2;J3KRF8 Q96GD4 57 70 AURKB Aurora kinase B yes no 2 2.3803E-05 145.55 By MS/MS By matching 4 2 0.98623 0.94397 14.664 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98623 1.0135 14.669 4 0 Median 1.0341 0.85528 6.8584 2 0 Median 33453000 17425000 16029000 0 0 0 0 0 0 0 0 0 0 0 0 30735000 16082000 14653000 2718900 1343000 1375800 36871 3656 38752;38753 195370;195371;195372;195373;195374;195375 198679;198680;198681 198680 1799 3 VMEPLTASR CTGRNIRQLSLDVRRVMEPLTASRLQVRKK SLDVRRVMEPLTASRLQVRKKNSLKDCVAV R V M S R L 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 1002.5168 A0A0A6YYI3;A0A0B4J1V8;Q9NQ55 A0A0A6YYI3 53 61 PPAN-P2RY11;PPAN Suppressor of SWI4 1 homolog yes no 2 0.0013275 91.069 By MS/MS 1 0.56035 0.56212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56035 0.56212 NaN 1 1 Median NaN NaN NaN 0 0 Median 5051000 2935500 2115500 0 0 0 0 0 0 0 0 0 0 0 0 5051000 2935500 2115500 0 0 0 36872 205 38754 195376 198682 198682 1 VMETNYFGPVALTK YRGTIMDTTVDVDKRVMETNYFGPVALTKA RVMETNYFGPVALTKALLPSMIKRRQGHIV R V M T K A 1 0 1 0 0 0 1 1 0 0 1 1 1 1 1 0 2 0 1 2 0 0 14 0 1568.7909 A0A0C4DGQ8;Q6IAN0;J3KRS1 A0A0C4DGQ8 147 160 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 2 0.00046163 69.721 By MS/MS By matching 1 1 1.0738 0.94491 1.1321 2 Median 1.0201 0.93738 NaN 1 0 Median 1.1303 0.95251 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15565000 7596700 7968200 13438000 6596000 6842300 2126600 1000600 1126000 0 0 0 0 0 0 0 0 0 0 0 0 36873 252 38755 195377;195378 198683;198684 198684 2 VMETQAQVDELK AAQLKHHSENKGLDKVMETQAQVDELKGIM LDKVMETQAQVDELKGIMVRNIDLVAQRGE K V M L K G 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 12 0 1389.681 P51809 P51809 126 137 VAMP7 Vesicle-associated membrane protein 7 yes yes 2 4.1172E-06 122.26 By MS/MS By MS/MS By matching 1 2 1 0.93823 0.88785 44.585 4 Median 0.985 0.91552 NaN 1 0 Median 0.83187 0.7123 73.887 2 1 Median 0.89369 0.86102 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11867000 6535300 5331900 6068200 3252400 2815700 4071100 2392100 1679000 1727900 890730 837220 0 0 0 0 0 0 0 0 0 36874 2443 38756 195379;195380;195381;195382 198685;198686;198687;198688;198689 198685 5 VMETSAQSSGDHQEQHVSVQEMQELK RYKTQYEELKAQQDKVMETSAQSSGDHQEQ HQEQHVSVQEMQELKETLNQAETKSKSLES K V M L K E 1 0 0 1 0 5 4 1 2 0 1 1 2 0 0 4 1 0 0 3 0 0 26 0 2941.3182 P12270 P12270 1455 1480 TPR Nucleoprotein TPR yes yes 3;4 2.8277E-20 73.389 By matching By MS/MS By MS/MS By MS/MS 2 3 3 3 1.0875 1.0681 13.569 11 Median 1.0043 0.98085 10.482 2 0 Median 1.2479 1.1077 24.255 3 0 Median 0.98873 1.0681 9.5398 3 0 Median 1.33 1.1962 9.4922 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 81806000 39144000 42663000 8879400 4541300 4338100 21316000 9551200 11765000 41173000 20833000 20340000 10438000 4217900 6220100 0 0 0 0 0 0 36875 1978 38757 195383;195384;195385;195386;195387;195388;195389;195390;195391;195392;195393 198690;198691;198692;198693;198694 198694 5 VMEYINR QNLLILTAIKADRTRVMEYINRLDNYDAPD AIKADRTRVMEYINRLDNYDAPDIANIAIS R V M N R L 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 7 0 923.45349 A0A087WVQ6;Q00610 A0A087WVQ6 1044 1050 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 0.001726 129.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 1 2 1.3114 1.1823 22.84 13 Median 1.3114 1.2986 41.536 3 0 Median 1.4076 1.2042 4.292 4 0 Median 1.0018 1.0998 4.7304 2 0 Median 1.5104 1.3281 NaN 1 0 Median 1.1467 1.1968 NaN 1 0 Median 1.1 1.0345 3.8732 2 1 Median 124450000 53616000 70833000 30596000 12226000 18369000 72106000 31023000 41083000 10780000 5503000 5276500 3382900 1299700 2083200 5473900 2653700 2820200 2111000 910450 1200500 36876 44 38758 195394;195395;195396;195397;195398;195399;195400;195401;195402;195403;195404;195405;195406 198695;198696;198697;198698;198699;198700;198701;198702;198703;198704;198705;198706;198707;198708;198709;198710 198696 16 VMFDALEQK SSEAWQQHDVQELCRVMFDALEQKWKQTEQ VQELCRVMFDALEQKWKQTEQADLINELYQ R V M Q K W 1 0 0 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 9 0 1079.5321 Q96K76 Q96K76 279 287 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 0.012973 60.436 By MS/MS 1 1.1613 1.1169 NaN 1 Median 1.1613 1.1169 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4325700 1939200 2386500 4325700 1939200 2386500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36877 3690 38759 195407 198711 198711 1 VMFEVWR KTLAESDEGKLHVLRVMFEVWRNHPQMIAV EGKLHVLRVMFEVWRNHPQMIAVLVDKMIR R V M W R N 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 2 0 0 7 0 965.47931 Q09161 Q09161 589 595 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.015867 70.268 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 3 1 1.122 1.0642 13.827 9 Median 1.3199 1.2872 NaN 1 0 Median 1.3678 1.2137 NaN 1 0 Median 0.90062 0.96066 11.494 2 0 Median 1.4497 1.2067 NaN 1 0 Median 0.93776 0.99455 13.157 3 0 Median 1.2859 1.0642 NaN 1 0 Median 11941000 5783000 6157500 2999200 1376300 1622900 1177800 460210 717570 3232000 1757600 1474400 194530 71930 122600 4169500 2046500 2123000 167450 70466 96986 36878 2747 38760 195408;195409;195410;195411;195412;195413;195414;195415;195416 198712;198713;198714;198715 198715 4 VMGFLADK TEAVTLNFRGEKLAKVMGFLADKKPEQGQR RGEKLAKVMGFLADKKPEQGQRVSGILVKR K V M D K K 1 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 8 0 879.45242 Q9UKF6;G5E9W3 Q9UKF6 466 473 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 2 0.041504 36.557 By MS/MS By matching 1 1 1.1557 1.0973 2.81 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0516 1.0757 NaN 1 0 Median 1.2702 1.1193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9451300 4767200 4684100 0 0 0 0 0 0 9112000 4619100 4492800 339340 148000 191340 0 0 0 0 0 0 36879 4309 38761 195417;195418 198716;198717 198716 2 VMGFLADKKPEQGQR TEAVTLNFRGEKLAKVMGFLADKKPEQGQR VMGFLADKKPEQGQRVSGILVKRNFNYHIL K V M Q R V 1 1 0 1 0 2 1 2 0 0 1 2 1 1 1 0 0 0 0 1 0 0 15 2 1702.8825 Q9UKF6;G5E9W3 Q9UKF6 466 480 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes no 3;4 0.0001108 54.402 By MS/MS 2 0.82752 0.94374 33.783 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82752 0.94374 33.783 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18822000 9996800 8825000 0 0 0 0 0 0 18822000 9996800 8825000 0 0 0 0 0 0 0 0 0 36880 4309 38762 195419;195420 198718;198719;198720;198721 198720 4 VMGLVPAK LLGMEFSGRDASGKRVMGLVPAKGLATSVL RDASGKRVMGLVPAKGLATSVLLSPDFLWD R V M A K G 1 0 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 2 0 0 8 0 813.47825 P49327;A0A0U1RQF0 P49327 1613 1620 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0044705 81.381 By MS/MS By MS/MS 2 3 1.2644 1.098 11.485 5 Median 0.93926 0.91921 3.5276 2 0 Median 1.298 1.1193 2.9784 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83561000 36905000 46657000 18978000 8657500 10320000 64583000 28247000 36336000 0 0 0 0 0 0 0 0 0 0 0 0 36881 2377 38763 195421;195422;195423;195424;195425 198722;198723;198724;198725;198726;198727;198728;198729 198724 8 VMGTFSTVTSTVK AVQLCESVANKLEGKVMGTFSTVTSTVKQA GKVMGTFSTVTSTVKQALQESLVQILQPQR K V M V K Q 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 2 4 0 0 3 0 0 13 0 1356.6959 P08240 P08240 374 386 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.000192 93.258 By MS/MS By MS/MS 1 1 1.3072 1.2141 2.7171 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.178 1.191 NaN 1 1 Median 1.4505 1.2377 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13900000 6179700 7720100 0 0 0 0 0 0 11988000 5374500 6613800 1911500 805240 1106300 0 0 0 0 0 0 36882 1900 38764 195426;195427 198730;198731 198730 2 VMIITGPNMGGK QYVPNNTDLSEDSERVMIITGPNMGGKSSY SERVMIITGPNMGGKSSYIKQVALITIMAQ R V M G K S 0 0 1 0 0 0 0 3 0 2 0 1 2 0 1 0 1 0 0 1 0 0 12 0 1216.6308 P20585;A0A590UJW0;A0A590UKC9;A0A590UJN8 P20585 891 902 MSH3 DNA mismatch repair protein Msh3 yes no 2 0.065285 48.796 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36883 2080 38765 195428 198732 198732 837 1 VMIPVPAGVEDGQTVR CVVCRGAGQAKQKKRVMIPVPAGVEDGQTV MIPVPAGVEDGQTVRMPVGKREIFITFRVQ R V M V R M 1 1 0 1 0 1 1 2 0 1 0 0 1 0 2 0 1 0 0 4 0 0 16 0 1666.8712 Q96EY1 Q96EY1 304 319 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 0.00010018 78.096 By matching By MS/MS By matching By matching By matching 1 2 2 2 1 0.96515 0.94102 12.086 8 Median NaN NaN NaN 0 0 Median 1.0408 0.91161 NaN 1 0 Median 0.86632 0.94102 0.70155 2 0 Median 1.1118 0.95971 9.9377 2 0 Median 0.89254 0.92099 5.6294 2 0 Median 1.5659 1.2825 NaN 1 0 Median 21301000 10477000 10825000 0 0 0 668570 330850 337720 13872000 7126700 6745600 1049800 519320 530510 5352900 2363300 2989600 357460 136340 221110 36884 3643 38766;38767 195429;195430;195431;195432;195433;195434;195435;195436 198733;198734;198735;198736;198737 198734 1798 5 VMITHGVDVTAQDTTGHSALHLAAK AFHLAAAKGHVECLRVMITHGVDVTAQDTT AQDTTGHSALHLAAKNSHHECIRKLLQSKC R V M A K N 4 0 0 2 0 1 0 2 3 1 2 1 1 0 0 1 4 0 0 3 0 0 25 0 2572.3068 Q9P0K7;D6RB27;D6R9G4;D6RBY4;D6REL2;D6R9G6;D6RF74;D6RE17 Q9P0K7 71 95 RAI14 Ankycorbin yes no 4 2.989E-13 60.398 By MS/MS By MS/MS 2 1 0.94282 1.0061 14.836 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90628 0.98139 3.5218 2 0 Median 1.4642 1.2643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23613000 12994000 10619000 0 0 0 0 0 0 18871000 11217000 7654300 4742500 1777500 2965000 0 0 0 0 0 0 36885 4204 38768 195437;195438;195439 198738;198739;198740 198740 3 VMITTSR HVDDEYRWAGVEDPKVMITTSRDPSSRLKM WAGVEDPKVMITTSRDPSSRLKMFAKELKL K V M S R D 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 2 0 0 1 0 0 7 0 806.43202 E7ENR5;H0Y714;Q96G21;B8ZZ47 E7ENR5 30 36 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes no 2 0.066709 36.185 By MS/MS 1 1.2675 1.1127 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2675 1.1127 NaN 1 0 Median 442840 193850 249000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 442840 193850 249000 36886 865 38769 195440 198741 198741 1 VMLDLQSYR KRCSLPPSYCSKLVKVMLDLQSYRRSSSVF CSKLVKVMLDLQSYRRSSSVFAGKQGFITL K V M Y R R 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 0 1 1 0 0 9 0 1123.5696 Q9NU22 Q9NU22 1249 1257 MDN1 Midasin yes yes 2 0.00014387 144.38 By matching By MS/MS By MS/MS 1 1 1 1.0547 1.1112 24.291 3 Median NaN NaN NaN 0 0 Median 0.87243 0.77627 NaN 1 0 Median 1.0547 1.1112 NaN 1 0 Median 1.4191 1.2335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14050000 6750500 7300000 0 0 0 128470 70256 58214 13299000 6428300 6870900 622780 251860 370920 0 0 0 0 0 0 36887 4112 38770 195441;195442;195443 198742;198743;198744;198745 198743 4 VMLDLQSYRR KRCSLPPSYCSKLVKVMLDLQSYRRSSSVF SKLVKVMLDLQSYRRSSSVFAGKQGFITLR K V M R R S 0 2 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 0 1 1 0 0 10 1 1279.6707 Q9NU22 Q9NU22 1249 1258 MDN1 Midasin yes yes 3 0.00016434 96.89 By MS/MS By matching 1 1 1.0209 1.1131 10.841 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0936 1.2018 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95306 1.031 NaN 1 0 Median NaN NaN NaN 0 0 Median 11374000 5425800 5948200 0 0 0 0 0 0 10392000 5058900 5332700 0 0 0 982330 366830 615490 0 0 0 36888 4112 38771 195444;195445 198746 198746 1 VMLEDGR LRKEFSPFGSITSAKVMLEDGRSKGFGFVC FGSITSAKVMLEDGRSKGFGFVCFSSPEEA K V M G R S 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 818.39564 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 325 331 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.014432 74.415 By MS/MS By MS/MS By matching 1 2 1 1.1777 1.0754 15.167 4 Median 1.2147 1.1689 NaN 1 0 Median 1.1346 0.98258 0.98203 2 0 Median 1.2705 1.3437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14989000 7126000 7863300 4248500 2042300 2206300 9050100 4415600 4634500 1690600 668110 1022500 0 0 0 0 0 0 0 0 0 36889 576;1151 38772 195446;195447;195448;195449 198747;198748;198749;198750;198751;198752 198747 6 VMLESFIDTQK LRDYVIEDDVNMAIRVMLESFIDTQKFSVM MAIRVMLESFIDTQKFSVMRSMRKTFARYL R V M Q K F 0 0 0 1 0 1 1 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 11 0 1309.6588 P49736;H0Y8E6 P49736 797 807 MCM2 DNA replication licensing factor MCM2 yes no 2 0.00015337 93.649 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 2 1 1 1 0.85188 0.85876 31.81 8 Median 0.6423 0.61931 48.053 2 0 Median 1.0025 0.86012 NaN 1 0 Median 0.75546 0.81606 6.9895 2 0 Median 1.1137 0.94324 NaN 1 0 Median 0.97241 1.002 NaN 1 0 Median 0.45024 0.46433 NaN 1 0 Median 54556000 29401000 25155000 33171000 17880000 15291000 380110 160870 219240 19718000 10711000 9006700 509350 251070 258280 669800 328220 341590 108220 70027 38190 36890 2393 38773 195450;195451;195452;195453;195454;195455;195456;195457 198753;198754;198755;198756;198757;198758 198757 6 VMLETPEYR ENTTDCLSTMASVCRVMLETPEYRSRFTNE MASVCRVMLETPEYRSRFTNEETVSFCLRV R V M Y R S 0 1 0 0 0 0 2 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 9 0 1136.5536 Q9NUQ9;A0A1W2PRQ0;A0A087X178;Q9H0Q0 Q9NUQ9 233 241 FAM49B;FAM49A Protein FAM49B;Protein FAM49A yes no 2 0.001269 91.318 By MS/MS By MS/MS 1 1 0.55036 0.48565 83.566 2 Median 0.93652 0.8769 NaN 1 1 Median 0.32342 0.26897 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27058000 16686000 10371000 14309000 6715200 7593900 12748000 9971200 2777200 0 0 0 0 0 0 0 0 0 0 0 0 36891 4120 38774 195458;195459 198759;198760 198759 2 VMLGETNPADSK VAMVWEGLNVVKTGRVMLGETNPADSKPGT TGRVMLGETNPADSKPGTIRGDFCIQVGRT R V M S K P 1 0 1 1 0 0 1 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 12 0 1260.602 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;O60361 Q32Q12 114 125 NME1;NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 2 0.00059974 70.977 By MS/MS By MS/MS 1 1 0.90633 0.8165 11.555 2 Median 0.79629 0.75244 NaN 1 1 Median 1.0316 0.88601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12735000 6489300 6245700 8831000 4693100 4137900 3904000 1796200 2107800 0 0 0 0 0 0 0 0 0 0 0 0 36892 3008;2018 38775 195460;195461 198761;198762;198763 198763 3 VMLGETNPADSKPGTIR VAMVWEGLNVVKTGRVMLGETNPADSKPGT LGETNPADSKPGTIRGDFCIQVGRTMANLE R V M I R G 1 1 1 1 0 0 1 2 0 1 1 1 1 0 2 1 2 0 0 1 0 0 17 1 1784.9091 P15531;Q32Q12;J3KPD9;P22392;E7ERL0;O60361 Q32Q12 114 130 NME1;NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase A;Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase no no 2;3 5.1813E-77 247.67 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 11 4 7 2 2 0.93452 0.85097 21.578 34 Median 0.87016 0.84629 8.0527 8 0 Median 0.96809 0.84627 4.3651 11 0 Median 0.87588 0.90042 55.381 4 0 Median 0.97506 0.86111 22.367 7 2 Median 0.89827 1.0128 14.931 2 0 Median 1.0356 0.82829 3.4356 2 0 Median 4972300000 2546400000 2426000000 3132800000 1635000000 1497800000 1424200000 697970000 726260000 359920000 185700000 174220000 47636000 23682000 23955000 5383100 2898400 2484700 2402000 1148800 1253100 36893 3008;2018 38776;38777 195462;195463;195464;195465;195466;195467;195468;195469;195470;195471;195472;195473;195474;195475;195476;195477;195478;195479;195480;195481;195482;195483;195484;195485;195486;195487;195488;195489;195490;195491;195492;195493;195494;195495 198764;198765;198766;198767;198768;198769;198770;198771;198772;198773;198774;198775;198776;198777;198778;198779;198780;198781;198782;198783;198784;198785;198786;198787;198788;198789;198790;198791;198792;198793;198794;198795;198796;198797;198798;198799;198800;198801;198802;198803;198804;198805;198806;198807;198808;198809;198810;198811;198812;198813;198814;198815;198816;198817;198818;198819;198820;198821;198822;198823;198824;198825;198826;198827;198828;198829;198830;198831;198832;198833;198834;198835;198836;198837;198838;198839 198803 804 76 VMLLQQGLNDR LAEKVHMRAMSIAQRVMLLQQGLNDRSDAV IAQRVMLLQQGLNDRSDAVKQAMQKHLLQG R V M D R S 0 1 1 1 0 2 0 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 11 0 1285.6813 Q9BPX3 Q9BPX3 247 257 NCAPG Condensin complex subunit 3 yes yes 2 0.00011486 131.44 By MS/MS By MS/MS By MS/MS 1 2 2 1.0213 0.91549 12.718 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92706 1.0057 13.295 2 0 Median 1.0213 0.86707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15216000 7697000 7518900 0 0 0 0 0 0 9680800 5139100 4541700 5535100 2557900 2977200 0 0 0 0 0 0 36894 3778 38778;38779 195496;195497;195498;195499;195500 198840;198841;198842;198843;198844;198845 198844 1828 6 VMLMASPSMEDLYHK AILDPPDADHLYSAKVMLMASPSMEDLYHK VMLMASPSMEDLYHKSCALAEDPQELRDGF K V M H K S 1 0 0 1 0 0 1 0 1 0 2 1 3 0 1 2 0 0 1 1 0 0 15 0 1750.8092 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;F5H3E1 Q8IX12 449 463 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2;3 4.1706E-05 84.17 By MS/MS By matching By matching 3 1 1 0.84053 0.84327 9.7316 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78092 0.83217 11.859 3 0 Median 0.99757 0.85453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43041000 23601000 19440000 0 0 0 0 0 0 42185000 23159000 19026000 305440 165910 139530 551020 276170 274850 0 0 0 36895 3331 38780 195501;195502;195503;195504;195505 198846;198847;198848;198849 198849 4 VMLTVFK PVFKKYDRNGTQMKKVMLTVFKHNHGAYQF RNGTQMKKVMLTVFKHNHGAYQFFREALQF K V M F K H 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 2 0 0 7 0 836.483 F5H2C9;Q86UY6 F5H2C9 58 64 NAA40 N-alpha-acetyltransferase 40 yes no 2 0.033693 48.174 By MS/MS By matching 1 1 1.309 1.2022 13.803 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2991 1.3254 NaN 1 0 Median 1.3189 1.0904 NaN 1 0 Median 22794000 10000000 12794000 0 0 0 0 0 0 0 0 0 0 0 0 16651000 7436500 9214500 6142800 2563600 3579200 36896 1027 38781 195506;195507 198850 198850 1 VMLVNSMNTVK MIDERQQELTHQEHRVMLVNSMNTVKELLP QEHRVMLVNSMNTVKELLPVLISAMKIFVT R V M V K E 0 0 2 0 0 0 0 0 0 0 1 1 2 0 0 1 1 0 0 3 0 0 11 0 1234.6414 P18206 P18206 189 199 VCL Vinculin yes yes 2 0.00013531 118.26 By MS/MS By MS/MS By matching 1 2 1 1.1379 1.0243 9.8015 4 Median 1.0756 1.0311 NaN 1 0 Median 1.1446 0.97263 16.142 2 0 Median NaN NaN NaN 0 0 Median 1.2038 1.0175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76403000 36847000 39555000 47465000 22946000 24519000 27176000 13130000 14046000 0 0 0 1761500 771040 990470 0 0 0 0 0 0 36897 2057 38782 195508;195509;195510;195511 198851;198852;198853;198854 198851 4 VMLYPSR FRSNLPAKAIGHRIRVMLYPSRI_______ KAIGHRIRVMLYPSRI______________ R V M S R I 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 7 0 864.45276 P18077 P18077 103 109 RPL35A 60S ribosomal protein L35a yes yes 2 0.003648 103.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 3 2 2 2 3 1.054 0.95934 13.745 15 Median 1.021 0.99553 13.092 3 0 Median 0.99207 0.84884 6.7371 3 0 Median 1.0993 1.1135 7.77 2 1 Median 1.2257 0.96376 3.8157 2 0 Median 1.1223 1.1652 6.1316 2 0 Median 1.1718 0.92238 8.6967 3 0 Median 167160000 81945000 85213000 34858000 17144000 17715000 108400000 53514000 54887000 10594000 5294900 5299500 7941700 3553700 4388000 2226400 1075200 1151200 3136300 1364100 1772200 36898 2054 38783;38784 195512;195513;195514;195515;195516;195517;195518;195519;195520;195521;195522;195523;195524;195525;195526 198855;198856;198857;198858;198859;198860;198861;198862;198863;198864;198865;198866;198867 198864 816 13 VMLYPSRI FRSNLPAKAIGHRIRVMLYPSRI_______ AIGHRIRVMLYPSRI_______________ R V M R I - 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 0 0 8 1 977.53682 P18077 P18077 103 110 RPL35A 60S ribosomal protein L35a yes yes 2 0.0036281 107.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 4 3 4 2 3 1.0485 0.94722 24.322 22 Median 0.98059 0.9462 8.8456 7 1 Median 1.0781 0.89769 5.8697 4 0 Median 1.0497 1.0607 7.1944 3 0 Median 1.2432 1.0234 17.077 4 0 Median 1.0269 1.0656 0.69423 2 0 Median 0.64894 0.53808 57.045 2 0 Median 1489700000 722750000 766970000 876220000 429450000 446770000 445450000 212820000 232630000 52262000 24893000 27369000 45981000 20448000 25533000 66841000 33779000 33062000 2961800 1359800 1602000 36899 2054 38785;38786 195527;195528;195529;195530;195531;195532;195533;195534;195535;195536;195537;195538;195539;195540;195541;195542;195543;195544;195545;195546;195547;195548;195549 198868;198869;198870;198871;198872;198873;198874;198875;198876;198877;198878;198879;198880;198881;198882;198883;198884;198885;198886;198887;198888;198889;198890;198891;198892;198893;198894;198895;198896;198897;198898 198876 816 31 VMMLVYPEELKPVLTQAK IRKQSAQFWNATFAKVMMLVYPEELKPVLT LVYPEELKPVLTQAKQKFLLLLPGLETVEM K V M A K Q 1 0 0 0 0 1 2 0 0 0 3 2 2 0 2 0 1 0 1 3 0 0 18 1 2088.1363 Q5UIP0 Q5UIP0 942 959 RIF1 Telomere-associated protein RIF1 yes yes 3 0.067675 8.9424 By MS/MS 1 0.31387 0.36119 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31387 0.36119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3175400 2619500 555880 0 0 0 0 0 0 3175400 2619500 555880 0 0 0 0 0 0 0 0 0 36900 3109 38787 195550 198899 198899 1 VMMVALGR RNAWKHSRMFFGKNKVMMVALGRSPSDEYK MFFGKNKVMMVALGRSPSDEYKDNLHQVSK K V M G R S 1 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 2 0 0 8 0 875.47211 Q9UKD2 Q9UKD2 72 79 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0024016 117.7 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 2 1.2711 1.0754 37.848 9 Median 1.2304 1.1633 NaN 1 0 Median 0.91297 0.78429 44.643 2 0 Median 1.3264 1.2702 60.829 3 0 Median NaN NaN NaN 0 0 Median 1.2558 1.2705 NaN 1 0 Median 1.2822 1.0395 1.3423 2 0 Median 72126000 33295000 38831000 6641000 3205100 3435800 6520600 3319600 3200900 9191700 4468600 4723100 0 0 0 35861000 16017000 19844000 13911000 6284200 7627100 36901 4308 38788 195551;195552;195553;195554;195555;195556;195557;195558;195559 198900;198901;198902;198903 198900 4 VMNILHR AQKIRMTSGVTGDWKVMNILHRIASQVAAL SGVTGDWKVMNILHRIASQVAALDLGYKPG K V M H R I 0 1 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 7 0 881.49054 P28331;B4DJ81 P28331 512 518 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes no 2 0.021746 74.717 By MS/MS By MS/MS 1 1 1.1145 1.0302 84.44 2 Median 0.5723 0.56703 NaN 1 0 Median 2.1705 1.8717 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3069600 1450700 1618900 1660100 1004100 655960 1409500 446580 962960 0 0 0 0 0 0 0 0 0 0 0 0 36902 2165 38789 195560;195561 198904;198905 198905 2 VMNKDQWYNVLEFSR LFSVFYQYLEQSKYRVMNKDQWYNVLEFSR VMNKDQWYNVLEFSRTVHADLSNYDEDGAW R V M S R T 0 1 2 1 0 1 1 0 0 0 1 1 1 1 0 1 0 1 1 2 0 0 15 1 1927.9251 Q9BTE7;E9PM04 Q9BTE7 191 205 DCUN1D5 DCN1-like protein 5;DCN1-like protein yes no 3 0.001777 34.954 By MS/MS By matching 1 2 1.3558 1.2779 0.65223 3 Median 1.2152 1.27 NaN 1 0 Median 1.4075 1.2823 0.48523 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11522000 4841600 6680900 10762000 4549600 6212700 760210 292010 468210 0 0 0 0 0 0 0 0 0 0 0 0 36903 3826 38790 195562;195563;195564 198906 198906 1 VMNLISK AQNPANMSKYQSNPKVMNLISKLSAKFGGQ SKYQSNPKVMNLISKLSAKFGGQA______ K V M S K L 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 7 0 803.45751 P50502;Q8NFI4 P50502 354 360 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 yes no 2 0.018227 81.297 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1.1357 1.0781 11.116 7 Median 1.0543 1.0017 8.2617 2 0 Median 1.4719 1.2467 4.2118 3 0 Median 1.0909 1.0781 NaN 1 0 Median 1.1357 1.0217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51253000 22216000 29037000 16782000 7488700 9293200 16878000 6574700 10303000 3903400 1749100 2154300 13689000 6403600 7285800 0 0 0 0 0 0 36904 2415 38791 195565;195566;195567;195568;195569;195570;195571;195572 198907;198908;198909;198910;198911;198912;198913;198914;198915 198914 9 VMNTGSQFVMEGVK SYGSTTTKPMGLLSRVMNTGSQFVMEGVKN RVMNTGSQFVMEGVKNLVLKQQNLPVTRIL R V M V K N 0 0 1 0 0 1 1 2 0 0 0 1 2 1 0 1 1 0 0 3 0 0 14 0 1525.7269 Q8WVM8 Q8WVM8 523 536 SCFD1 Sec1 family domain-containing protein 1 yes yes 2 0.00019873 79.693 By MS/MS 1 0.77687 0.73937 NaN 1 Median 0.77687 0.73937 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6864900 3580800 3284100 6864900 3580800 3284100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36905 3503 38792 195573 198916 198916 1 VMPLIIQGFK LLGVSNKMTDRERDKVMPLIIQGFKDAAEE RERDKVMPLIIQGFKDAAEEAGTSVTGGQT K V M F K D 0 0 0 0 0 1 0 1 0 2 1 1 1 1 1 0 0 0 0 1 0 0 10 0 1144.6678 P49903;Q5T5U6;Q5T5U7 P49903 140 149 SEPHS1 Selenide, water dikinase 1 yes no 2 0.0016668 63.48 By matching By MS/MS 1 1 1.0703 1.0075 1.147 2 Median NaN NaN NaN 0 0 Median 1.1654 0.99941 NaN 1 0 Median 0.98292 1.0158 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14085000 7121000 6964300 0 0 0 1523100 613210 909900 12562000 6507800 6054400 0 0 0 0 0 0 0 0 0 36906 2404 38793 195574;195575 198917;198918 198918 2 VMPNAIVQSVGVSSGK LSNWTMEKVRREGVKVMPNAIVQSVGVSSG MPNAIVQSVGVSSGKLLIKLKDGRKVETDH K V M G K L 1 0 1 0 0 1 0 2 0 1 0 1 1 0 1 3 0 0 0 4 0 0 16 0 1571.8341 O95831;E9PMA0 O95831 363 378 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 5.2981E-10 113.65 By MS/MS By matching By MS/MS 3 1 2 1.1937 1.1407 19.327 6 Median 1.1356 1.0777 16.475 3 0 Median 1.7327 1.4961 NaN 1 0 Median 1.1487 1.187 18.169 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48217000 24090000 24128000 37712000 19374000 18338000 1252200 459240 792910 9253300 4256500 4996800 0 0 0 0 0 0 0 0 0 36907 1797 38794;38795 195576;195577;195578;195579;195580;195581 198919;198920;198921;198922;198923;198924;198925;198926;198927 198923 573 9 VMPSSFFLLLR ELHDHGVSSLSVKIRVMPSSFFLLLRFFLR VKIRVMPSSFFLLLRFFLRIDGVLIRMNDT R V M L R F 0 1 0 0 0 0 0 0 0 0 3 0 1 2 1 2 0 0 0 1 0 0 11 0 1308.7264 O75663 O75663 174 184 TIPRL TIP41-like protein yes yes 2 0.042268 27.115 By MS/MS By matching 1 1 0.88276 0.86285 11.246 2 Median 0.96245 0.93427 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80967 0.79689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1776300 927810 848520 1680200 875030 805210 0 0 0 96083 52778 43305 0 0 0 0 0 0 0 0 0 36908 1689 38796 195582;195583 198928 198928 1 VMQLALFQGIAK TNRCVRILGKQENIRVMQLALFQGIAKKHR NIRVMQLALFQGIAKKHRAATTIEMKASEN R V M A K K 2 0 0 0 0 2 0 1 0 1 2 1 1 1 0 0 0 0 0 1 0 0 12 0 1317.7479 Q96BP3;F5H7P7 Q96BP3 400 411 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.00094354 58.981 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.112 1.0749 12.193 4 Median 1.189 1.2023 NaN 1 0 Median 1.04 0.90575 NaN 1 0 Median 1.0079 1.0301 NaN 1 0 Median 1.2968 1.1216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11598000 5134200 6464300 1091700 512520 579130 1020200 510310 509910 9306200 4016700 5289400 180430 94639 85796 0 0 0 0 0 0 36909 3609 38797 195584;195585;195586;195587 198929;198930 198930 2 VMQPLVQQPILPVVK HREGSTQQLQTTSPKVMQPLVQQPILPVVK VMQPLVQQPILPVVKQSVKERLGPVPSSTI K V M V K Q 0 0 0 0 0 3 0 0 0 1 2 1 1 0 3 0 0 0 0 4 0 0 15 0 1688.0059 Q5T8P6 Q5T8P6 619 633 RBM26 RNA-binding protein 26 yes yes 2 0.00032954 52.79 By MS/MS By matching By MS/MS By matching 1 1 3 2 0.6149 0.5899 13.104 7 Median 0.63781 0.63788 NaN 1 0 Median 0.67357 0.61582 NaN 1 0 Median 0.51688 0.55168 4.5915 3 0 Median 0.74214 0.64924 26.086 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10424000 6696800 3727100 1885400 1227200 658270 245370 148570 96805 8031800 5173300 2858500 261280 147760 113520 0 0 0 0 0 0 36910 3097 38798;38799 195588;195589;195590;195591;195592;195593;195594 198931;198932;198933;198934 198933 1663 4 VMQQNLVYYQYHR APCAVSYLLFDQNDKVMQQNLVYYQYHRDT DKVMQQNLVYYQYHRDTWGLSDEHFQPRPE K V M H R D 0 1 1 0 0 3 0 0 1 0 1 0 1 0 0 0 0 0 3 2 0 0 13 0 1740.8406 C9JP16;O75718 C9JP16 287 299 CRTAP Cartilage-associated protein yes no 3 0.00016503 69.451 By MS/MS 1 1.8289 1.7912 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8289 1.7912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21136000 6460000 14676000 0 0 0 0 0 0 21136000 6460000 14676000 0 0 0 0 0 0 0 0 0 36911 714 38800 195595 198935 198935 1 VMQQQQQTTQQQLPQK FKEGKAQEPSAAIPKVMQQQQQTTQQQLPQ MQQQQQTTQQQLPQKVQAQVIQETIVPKEP K V M Q K V 0 0 0 0 0 9 0 0 0 0 1 1 1 0 1 0 2 0 0 1 0 0 16 0 1940.9738 Q15459 Q15459 116 131 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 1.7556E-08 130.01 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 1 0.92427 0.8253 19.885 9 Median NaN NaN NaN 0 0 Median 0.79703 0.68071 27.24 2 0 Median 0.87569 0.96276 7.6701 2 0 Median 0.90361 0.77355 20.7 2 1 Median 0.80155 0.83527 25.823 2 0 Median 0.94485 0.78708 NaN 1 0 Median 37406000 19540000 17866000 0 0 0 11818000 6706900 5110900 10021000 5409900 4611400 5929600 2934800 2994800 8790800 3993400 4797300 846260 494950 351300 36912 2954 38801 195596;195597;195598;195599;195600;195601;195602;195603;195604 198936;198937;198938;198939;198940;198941;198942;198943;198944;198945 198941 10 VMQTDESNKETANLQER GIVTVEQSPSSSKLKVMQTDESNKETANLQ QTDESNKETANLQERSISNDDGEEKIVTSV K V M E R S 1 1 2 1 0 2 3 0 0 0 1 1 1 0 0 1 2 0 0 1 0 0 17 1 1991.9218 Q8NFC6;H0Y9Y2 Q8NFC6 2913 2929 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes no 3 0.00017046 41.412 By MS/MS 2 1.0352 1.2144 20.623 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0352 1.2144 20.623 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5824900 3135400 2689500 0 0 0 0 0 0 5824900 3135400 2689500 0 0 0 0 0 0 0 0 0 36913 3434 38802 195605;195606 198946;198947;198948 198947 3 VMQVLNADAIVVK PTANLDQKDKQFVAKVMQVLNADAIVVKLN AKVMQVLNADAIVVKLNSGDYKTIHLSSIR K V M V K L 2 0 1 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 4 0 0 13 0 1398.7905 Q7KZF4 Q7KZF4 347 359 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00045482 73.067 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 1 2 3 1 1 1.1832 1.0853 24.145 9 Median 1.0205 0.98596 NaN 1 0 Median 1.199 1.0294 NaN 1 0 Median 1.0947 1.1993 10.727 2 1 Median 0.89532 0.78627 24.306 3 1 Median 1.5146 1.5556 NaN 1 0 Median 1.2913 1.0853 NaN 1 0 Median 38749000 17827000 20922000 14444000 6729300 7715100 4285400 1777800 2507700 12290000 5836500 6453000 6743800 3150900 3592900 699650 221660 478000 286130 110390 175750 36914 3214 38803;38804 195607;195608;195609;195610;195611;195612;195613;195614;195615 198949;198950;198951;198952;198953;198954 198949 1685 6 VMSDFAINQEQK ASAFSLPICEGLTQRVMSDFAINQEQKEAL TQRVMSDFAINQEQKEALSNLTALTSDSDT R V M Q K E 1 0 1 1 0 2 1 0 0 1 0 1 1 1 0 1 0 0 0 1 0 0 12 0 1408.6657 Q96EY7 Q96EY7 649 660 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.0010099 86.898 By MS/MS By MS/MS 1 1 1.1637 1.0458 13.758 2 Median 1.0012 0.94882 NaN 1 1 Median 1.3526 1.1526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8791300 4212100 4579200 4438900 2369200 2069800 4352400 1842900 2509400 0 0 0 0 0 0 0 0 0 0 0 0 36915 3644 38805 195616;195617 198955;198956 198955 2 VMSEFNNNFR VEVAAAIAGYVFRDKVMSEFNNNFRQQMEN VFRDKVMSEFNNNFRQQMENYPKNNHTA__ K V M F R Q 0 1 3 0 0 0 1 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 10 0 1256.5608 F8VNT9;F8VV56;F8W022;F8VWK8;P08962 F8VNT9 111 120 CD63 Tetraspanin;CD63 antigen yes no 2 6.9308E-08 168.23 By MS/MS By MS/MS By matching 3 7 1 1.0806 0.99579 31.411 11 Median 1.1291 1.0555 25.751 3 0 Median 1.0806 0.89872 36.151 7 1 Median 0.91916 0.99579 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137010000 61477000 75531000 94129000 43341000 50788000 39186000 16452000 22734000 3694300 1684300 2010000 0 0 0 0 0 0 0 0 0 36916 1055 38806;38807 195618;195619;195620;195621;195622;195623;195624;195625;195626;195627;195628 198957;198958;198959;198960;198961;198962;198963;198964;198965;198966;198967 198960 358 11 VMSQEIQEQLHK LKKMVKDQQEAEKKKVMSQEIQEQLHKQQE KKKVMSQEIQEQLHKQQEVIADKQMSVKED K V M H K Q 0 0 0 0 0 3 2 0 1 1 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1468.7344 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2 Q14204 3255 3266 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 1.7839E-10 146.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 4 5 1 4 1.1924 1.0631 24.241 21 Median 1.0676 1.0649 8.3725 4 2 Median 1.2553 1.1281 4.1936 3 1 Median 1.0812 1.1711 15.407 4 1 Median 1.2024 1.2067 21.456 5 0 Median 1.2536 1.3135 NaN 1 0 Median 1.1928 1.021 41.955 4 0 Median 549490000 251060000 298430000 158570000 75859000 82710000 183180000 73960000 109220000 146770000 72651000 74118000 46270000 21864000 24405000 5544400 2206200 3338300 9158700 4521700 4637000 36917 2865 38808;38809 195629;195630;195631;195632;195633;195634;195635;195636;195637;195638;195639;195640;195641;195642;195643;195644;195645;195646;195647;195648;195649;195650 198968;198969;198970;198971;198972;198973;198974;198975;198976;198977;198978;198979;198980;198981;198982;198983;198984;198985;198986;198987;198988;198989;198990;198991;198992;198993 198969 1566 26 VMSQNFTNCHTK KPADAVYGQKEIHRKVMSQNFTNCHTKIRH HRKVMSQNFTNCHTKIRHVDAHATLNDGVV K V M T K I 0 0 2 0 1 1 0 0 1 0 0 1 1 1 0 1 2 0 0 1 0 0 12 0 1465.6442 Q13283;E5RIZ6;E5RIF8;E5RH42;E5RJU8;E5RI46 Q13283 65 76 G3BP1 Ras GTPase-activating protein-binding protein 1 yes no 3 0.023077 38.674 By MS/MS 1 1.0456 0.89308 NaN 1 Median NaN NaN NaN 0 0 Median 1.0456 0.89308 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4036100 2059000 1977100 0 0 0 4036100 2059000 1977100 0 0 0 0 0 0 0 0 0 0 0 0 36918 2803 38810 195651 198994 198994 0 VMSVVQTKPVQTSAVTGQASTGPVTQIIQTK ISVPGGSALISNLGKVMSVVQTKPVQTSAV GQASTGPVTQIIQTKGPLPAGTILKLVTSA K V M T K G 2 0 0 0 0 5 0 2 0 2 0 2 1 0 2 3 6 0 0 6 0 0 31 1 3183.7173 A6NEM2;P51610 A6NEM2 683 713 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 2.0777E-14 54.517 By MS/MS 3 0.44336 0.51434 31.95 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44336 0.51434 31.95 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20364000 13728000 6635500 0 0 0 0 0 0 20364000 13728000 6635500 0 0 0 0 0 0 0 0 0 36919 509;2438 38811 195652;195653;195654 198995;198996 198995 2 VMTIPYQPMPASSPVICAGGQDR CLVMLETLSQSPQGRVMTIPYQPMPASSPV MPASSPVICAGGQDRCSDAAGYPHATHDLE R V M D R C 2 1 0 1 1 2 0 2 0 2 0 0 2 0 4 2 1 0 1 2 0 0 23 0 2474.1756 Q15365 Q15365 178 200 PCBP1 Poly(rC)-binding protein 1 yes yes 3 0.029029 12.677 By MS/MS 1 0.59664 0.57007 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59664 0.57007 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1069900 488220 581650 0 0 0 0 0 0 1069900 488220 581650 0 0 0 0 0 0 0 0 0 36920 2941 38812 195655 198997 198997 1 VMTVNYNTHGELGEGAR QYLSQGNVVFKDSVKVMTVNYNTHGELGEG TVNYNTHGELGEGARKFVFFNIPQIQYKNP K V M A R K 1 1 2 0 0 0 2 3 1 0 1 0 1 0 0 0 2 0 1 2 0 0 17 0 1846.8632 P82663;E7EPW2 P82663 29 45 MRPS25 28S ribosomal protein S25, mitochondrial yes no 2;3 6.0937E-12 109.35 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 1 1 1 1 1.0753 1.0484 21.98 8 Median 1.0204 0.97576 6.9298 4 0 Median 1.4273 1.1831 NaN 1 0 Median 1.0709 1.0273 NaN 1 0 Median 1.7897 1.4788 NaN 1 0 Median 1.5948 1.6871 NaN 1 1 Median NaN NaN NaN 0 0 Median 97930000 46568000 51362000 77746000 37911000 39835000 10484000 4140000 6344500 5969000 3080700 2888300 1135000 452650 682310 2595500 983670 1611800 0 0 0 36921 2651 38813 195656;195657;195658;195659;195660;195661;195662;195663 198998;198999;199000;199001;199002;199003;199004;199005;199006;199007;199008;199009 199002 12 VMTVSFHK HHGDGVEEAFYTTDRVMTVSFHKYGEYFPG AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG R V M H K Y 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 2 0 0 8 0 947.48987 Q13547;Q5TEE2;Q92769;O15379;E7ESJ6 Q13547 193 200 HDAC1;HDAC2;HDAC3 Histone deacetylase 1;Histone deacetylase 2;Histone deacetylase 3 no no 2 0.0035575 88.942 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 1 2 1.2225 1.0541 9.9597 8 Median NaN NaN NaN 0 0 Median 1.1146 0.93399 NaN 1 0 Median 1.0819 1.0546 NaN 1 0 Median 1.2782 1.0965 6.0012 3 1 Median 0.90652 0.86425 NaN 1 1 Median 1.2718 1.0404 1.7915 2 1 Median 50817000 23229000 27588000 0 0 0 10584000 4833500 5750400 10258000 4398700 5859700 10519000 4521500 5997300 7933900 4162300 3771600 11522000 5313100 6208900 36922 2823;3555;1541 38814 195664;195665;195666;195667;195668;195669;195670;195671;195672 199010;199011;199012;199013;199014;199015;199016;199017 199013 8 VMVAPISGSVTTGTK SPTSSTTSTISPAQKVMVAPISGSVTTGTK VMVAPISGSVTTGTKMVLTTKVGSPATVTF K V M T K M 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 2 3 0 0 3 0 0 15 0 1446.7752 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;J3QQK4 Q12830 2075 2089 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 4.6488E-10 112.13 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 1 2 0.98987 0.93504 14.774 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80596 0.88069 8.0826 4 0 Median 1.0791 0.99072 16.917 5 0 Median 0.77161 0.81012 NaN 1 0 Median 1.1212 0.96085 7.2542 2 0 Median 82138000 44247000 37891000 0 0 0 0 0 0 63021000 34298000 28723000 11915000 5843400 6071300 4084200 2455700 1628500 3118100 1650100 1468000 36923 2762 38815;38816 195673;195674;195675;195676;195677;195678;195679;195680;195681;195682;195683;195684 199018;199019;199020;199021;199022;199023;199024;199025;199026;199027;199028;199029 199021 1481 11 VMVELLGSYTEDNASQAR YEALVDCKKSDAASKVMVELLGSYTEDNAS ELLGSYTEDNASQARVDAHRCIVRALKDPN K V M A R V 2 1 1 1 0 1 2 1 0 0 2 0 1 0 0 2 1 0 1 2 0 0 18 0 1981.9415 Q7L2H7;J3KNJ2;H0YCQ8;E9PRY0 Q7L2H7 184 201 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 8.068E-08 91.858 By MS/MS By matching By MS/MS 1 2 2 1.0269 0.98157 3.6103 5 Median 1.0269 1.0224 NaN 1 0 Median 1.1168 0.96074 3.0324 2 0 Median 0.94905 0.98076 4.1375 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10180000 5137400 5042300 3577900 1642800 1935000 1540600 706360 834250 5061200 2788200 2273000 0 0 0 0 0 0 0 0 0 36924 3221 38817 195685;195686;195687;195688;195689 199030;199031;199032;199033 199031 4 VMVIVTDGESHDNHR EAFTEARGARRGVKKVMVIVTDGESHDNHR VMVIVTDGESHDNHRLKKVIQDCEDENIQR K V M H R L 0 1 1 2 0 0 1 1 2 1 0 0 1 0 0 1 1 0 0 3 0 0 15 0 1707.7999 P56199 P56199 275 289 ITGA1 Integrin alpha-1 yes yes 3 2.0453E-05 82.102 By matching By MS/MS 1 1 0.81483 0.74879 21.315 2 Median 0.64175 0.64403 NaN 1 0 Median 1.0346 0.8706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3870100 2179400 1690700 1908100 1266800 641360 1962000 912670 1049300 0 0 0 0 0 0 0 0 0 0 0 0 36925 2509 38818 195690;195691 199034;199035 199034 2 VMVLDFVTPTPLGTR GGLAAAKEAAQYGKKVMVLDFVTPTPLGTR VMVLDFVTPTPLGTRWGLGGTCVNVGCIPK K V M T R W 0 1 0 1 0 0 0 1 0 0 2 0 1 1 2 0 3 0 0 3 0 0 15 0 1644.8909 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E9PKD3;A0A0B4J225;E9PIZ5;E9PQI3;E9PLT3;E9PKI4 E9PIR7 38 52 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2 1.6761E-09 113.63 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0569 1.0485 32.153 7 Median 1.0995 1.0712 3.0252 2 0 Median 0.69892 0.6005 2.8308 2 0 Median 1.1269 1.1892 2.7268 2 2 Median 0.77323 0.67898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36069000 19007000 17062000 11250000 4576700 6673500 22166000 13206000 8960100 2425000 1107300 1317700 228090 117370 110730 0 0 0 0 0 0 36926 11 38819 195692;195693;195694;195695;195696;195697;195698 199036;199037;199038;199039;199040;199041 199038 6 VMVQINTSGEESK VNSSWQRKGSPERLKVMVQINTSGEESKHG LKVMVQINTSGEESKHGLPPSETIAIVEHI K V M S K H 0 0 1 0 0 1 2 1 0 1 0 1 1 0 0 2 1 0 0 2 0 0 13 0 1420.6868 O94903;E5RFX7 O94903 141 153 PROSC Proline synthase co-transcribed bacterial homolog protein yes no 2 5.735E-07 155.15 By MS/MS By MS/MS 1 2 1.3575 1.1401 29.444 3 Median 1.0933 0.99783 NaN 1 0 Median 1.6788 1.4137 30.412 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26425000 11861000 14564000 16849000 8157200 8691900 9575800 3703800 5871900 0 0 0 0 0 0 0 0 0 0 0 0 36927 1734 38820 195699;195700;195701 199042;199043;199044;199045;199046 199045 5 VMVQPINLIFR ______________________________ KVQKVMVQPINLIFRYLQNRSRIQVWLYEQ K V M F R Y 0 1 1 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 11 0 1328.7639 P62304 P62304 13 23 SNRPE Small nuclear ribonucleoprotein E yes yes 2 9.2231E-10 174.17 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 5 3 7 5 0.97258 0.90375 14.737 25 Median 0.93326 0.90032 0.53884 2 0 Median 1.2137 1.0361 8.4681 3 1 Plateau 0.87839 0.88256 9.5136 5 0 Median 1.1506 0.91423 28.062 3 0 Plateau 0.97258 1.0036 4.446 7 0 Median 1.0991 0.85974 11.684 5 0 Median 899220000 456350000 442870000 262360000 131780000 130590000 66949000 29262000 37687000 337560000 177260000 160300000 682080 289510 392570 206590000 105150000 101440000 25077000 12614000 12463000 36928 2581 38821;38822 195702;195703;195704;195705;195706;195707;195708;195709;195710;195711;195712;195713;195714;195715;195716;195717;195718;195719;195720;195721;195722;195723;195724;195725;195726 199047;199048;199049;199050;199051;199052;199053;199054;199055;199056;199057;199058;199059;199060;199061;199062;199063;199064;199065;199066;199067;199068;199069;199070;199071;199072;199073;199074;199075;199076;199077;199078;199079;199080;199081;199082;199083;199084 199074 1250 38 VMVTDADR IKRPFLEPKKHVGGRVMVTDADRSILSPGG KKHVGGRVMVTDADRSILSPGGSCGPIKVK R V M D R S 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 2 0 0 8 0 905.42767 P78347;A0A494C1K3 P78347 199 206 GTF2I General transcription factor II-I yes no 2 0.0078694 65.252 By matching By MS/MS By MS/MS 1 1 1 0.81606 0.86014 6.9813 2 Median 0.8948 0.90367 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74425 0.81871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5092700 2884200 2208500 457670 235540 222130 0 0 0 4635000 2648700 1986300 0 0 0 0 0 0 0 0 0 36929 2642 38823 195727;195728;195729 199085;199086;199087 199085 3 VMVTNVTSLLK VGDDPAVWQLKNSAKVMVTNVTSLLKTVKA NSAKVMVTNVTSLLKTVKAVEDEATKGTRA K V M L K T 0 0 1 0 0 0 0 0 0 0 2 1 1 0 0 1 2 0 0 3 0 0 11 0 1203.6897 Q9Y490 Q9Y490 2120 2130 TLN1 Talin-1 no no 2 0.00077434 62.823 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 1.2326 1.0554 51.097 7 Median 1.0196 1.0017 3.323 3 1 Median 1.233 1.0766 2.8082 2 0 Median 1.3751 1.5178 NaN 1 0 Median NaN NaN NaN 0 0 Median 3.8352 4.0291 NaN 1 1 Median NaN NaN NaN 0 0 Median 60405000 27453000 32953000 25855000 13239000 12616000 19622000 8758700 10864000 11062000 4641400 6420600 0 0 0 3865500 813400 3052100 0 0 0 36930 4441 38824 195730;195731;195732;195733;195734;195735;195736 199088;199089;199090;199091;199092;199093 199093 6 VMVVLGPQTGR EDMLETLVPKAEGDRVMVVLGPQTGRVGHL EGDRVMVVLGPQTGRVGHLLSRDRARSRAL R V M G R V 0 1 0 0 0 1 0 2 0 0 1 0 1 0 1 0 1 0 0 3 0 0 11 0 1155.6434 Q92917 Q92917 422 432 GPKOW G patch domain and KOW motifs-containing protein yes yes 2 0.011043 57.859 By MS/MS 1 0.96476 0.98158 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96476 0.98158 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7237100 4097800 3139300 0 0 0 0 0 0 7237100 4097800 3139300 0 0 0 0 0 0 0 0 0 36931 3566 38825 195737 199094 199094 1 VMYTPMAPGNYLISVK SKVKMDCQETPEGYKVMYTPMAPGNYLISV MYTPMAPGNYLISVKYGGPNHIVGSPFKAK K V M V K Y 1 0 1 0 0 0 0 1 0 1 1 1 2 0 2 1 1 0 2 2 0 0 16 0 1782.9048 O75369;E7EN95 O75369 2440 2455 FLNB Filamin-B yes no 2 0.00013161 54.471 By MS/MS By MS/MS By matching 3 1 1 0.89113 0.86 22.49 5 Median 0.93063 0.92436 30.318 3 0 Plateau 1.0018 0.87522 NaN 1 1 Median 0.67082 0.74768 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44726000 23221000 21505000 35719000 18498000 17221000 5540700 2689600 2851100 3466500 2033200 1433300 0 0 0 0 0 0 0 0 0 36932 1664 38826 195738;195739;195740;195741;195742 199095;199096;199097;199098;199099 199095 5 VNAELQAR KTGGLEIDSDFGGFRVNAELQARSNIWVAG SDFGGFRVNAELQARSNIWVAGDAACFYDI R V N A R S 2 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 899.48248 O95831;E9PMA0 O95831 423 430 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes no 2 0.018576 67.981 By MS/MS 1 0.98555 0.96904 NaN 1 Median 0.98555 0.96904 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3823000 1992000 1831000 3823000 1992000 1831000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36933 1797 38827 195743 199100 199100 1 VNAIEHVIIPR SFVTLDEAIKITNRRVNAIEHVIIPRIERT TNRRVNAIEHVIIPRIERTLAYIITELDER R V N P R I 1 1 1 0 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 2 0 0 11 0 1259.735 G3V2S6;Q9Y5K8;G3V2V6;H0YJH8 G3V2S6 114 124 ATP6V1D V-type proton ATPase subunit D yes no 3 0.00012782 69.01 By MS/MS 1 0.89346 0.83649 NaN 1 Median 0.89346 0.83649 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12907000 6454100 6452500 12907000 6454100 6452500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36934 1108 38828 195744 199101 199101 1 VNALLPTETFIPVIR FWRALLSKAYDLLDKVNALLPTETFIPVIR VNALLPTETFIPVIRGLVGNPLPSVRRKAL K V N I R G 1 1 1 0 0 0 1 0 0 2 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1681.9767 Q9H583;Q5T3Q7 Q9H583 1591 1605 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.042396 23.987 By MS/MS By matching By matching 1 1 1 1.0114 0.93382 7.5592 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80201 0.89532 NaN 1 0 Median 1.0666 0.93382 NaN 1 0 Median 1.0114 1.0369 NaN 1 0 Median NaN NaN NaN 0 0 Median 1766100 921370 844720 0 0 0 0 0 0 606320 330750 275570 501440 245820 255610 658340 344800 313540 0 0 0 36935 3086 38829 195745;195746;195747 199102;199103 199102 2 VNATGPQFVSGVIVK NEKTANREECRTQEKVNATGPQFVSGVIVK VNATGPQFVSGVIVKIISTEPLPGRKQVRD K V N V K I 1 0 1 0 0 1 0 2 0 1 0 1 0 1 1 1 1 0 0 4 0 0 15 0 1514.8457 Q4G0J3;D6R9Z6;H0YA82 Q4G0J3 444 458 LARP7 La-related protein 7 yes no 2 0.0085099 32.062 By MS/MS 1 0.8802 0.83929 NaN 1 Median 0.8802 0.83929 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4020300 2299300 1721000 4020300 2299300 1721000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36936 3020 38830 195748 199104 199104 1 VNAVPRPIPEK ILGRNLSGQPNFPCRVNAVPRPIPEKKWFM FPCRVNAVPRPIPEKKWFMEPAVIVCLGGI R V N E K K 1 1 1 0 0 0 1 0 0 1 0 1 0 0 3 0 0 0 0 2 0 0 11 1 1218.7085 Q9HD45 Q9HD45 430 440 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 3 0.00027924 62.166 By MS/MS 2 0.82104 0.77845 7.7431 2 Median NaN NaN NaN 0 0 Median 0.82104 0.77845 7.7431 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5929300 3305400 2623900 0 0 0 5929300 3305400 2623900 0 0 0 0 0 0 0 0 0 0 0 0 36937 4037 38831 195749;195750 199105;199106 199106 2 VNAVPRPIPEKK ILGRNLSGQPNFPCRVNAVPRPIPEKKWFM PCRVNAVPRPIPEKKWFMEPAVIVCLGGIL R V N K K W 1 1 1 0 0 0 1 0 0 1 0 2 0 0 3 0 0 0 0 2 0 0 12 2 1346.8034 Q9HD45 Q9HD45 430 441 TM9SF3 Transmembrane 9 superfamily member 3 yes yes 3 0.030031 22.329 By matching By MS/MS 2 2 0.75978 0.8063 10.769 4 Median 0.6995 0.75025 2.4047 2 0 Median 0.80964 0.89206 6.5124 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4453900 2584500 1869400 1080400 649100 431290 3373500 1935400 1438100 0 0 0 0 0 0 0 0 0 0 0 0 36938 4037 38832 195751;195752;195753;195754 199107;199108 199107 2 VNDFLAEIFKK EKGASRIDEKSSKAKVNDFLAEIFKKIGSK SKAKVNDFLAEIFKKIGSKENTKEGLAELY K V N K K I 1 0 1 1 0 0 1 0 0 1 1 2 0 2 0 0 0 0 0 1 0 0 11 1 1322.7234 Q14008;H0YDX5 Q14008 1829 1839 CKAP5 Cytoskeleton-associated protein 5 yes no 2;3 0.0078048 46.001 By matching By MS/MS By matching By matching 2 2 1 1 1.1849 1.1996 13.628 6 Median NaN NaN NaN 0 0 Median 1.1371 1.1032 1.1634 2 0 Median 1.2429 1.4346 4.8977 2 0 Median 1.1584 1.0806 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5091 1.2938 NaN 1 0 Median 11147000 4739600 6407300 0 0 0 347040 131200 215840 9910600 4215300 5695300 807840 364140 443700 0 0 0 81431 29025 52407 36939 2850 38833 195755;195756;195757;195758;195759;195760 199109;199110;199111;199112 199110 4 VNDNKEPEQIAFQDEDEAQLNK ILASGGDDAVILLWKVNDNKEPEQIAFQDE EQIAFQDEDEAQLNKENWTVVKTLRGHLED K V N N K E 2 0 3 3 0 3 4 0 0 1 1 2 0 1 1 0 0 0 0 1 0 0 22 1 2573.1882 Q13112 Q13112 95 116 CHAF1B Chromatin assembly factor 1 subunit B yes yes 3 0.00025423 27.904 By matching By matching By MS/MS 1 1 1 0.7942 0.73333 19.699 3 Median 0.75954 0.73114 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91612 1.03 NaN 1 0 Median 0.7942 0.73333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14260000 7014300 7246000 6422600 3277900 3144700 0 0 0 5546500 2593600 2952900 2291300 1142900 1148400 0 0 0 0 0 0 36940 2786 38834 195761;195762;195763 199113;199114 199114 2 VNDSDDLIMTENEVGK RQNIRRSLKEILWKRVNDSDDLIMTENEVG NDSDDLIMTENEVGKIALHIEKEMFNLFQV R V N G K I 0 0 2 3 0 0 2 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 16 0 1777.804 Q9BTC0 Q9BTC0 686 701 DIDO1 Death-inducer obliterator 1 yes yes 2 6.104E-10 104.94 By matching By MS/MS By matching 1 2 2 1.0237 0.92234 23.808 5 Median NaN NaN NaN 0 0 Median 1.0141 0.85746 NaN 1 0 Median 1.0835 1.1303 40.664 2 0 Median 1.085 0.94329 3.1766 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18325000 9323400 9002000 0 0 0 1552000 733660 818330 15666000 8050300 7615500 1107600 539440 568120 0 0 0 0 0 0 36941 3824 38835 195764;195765;195766;195767;195768 199115;199116 199115 2 VNDTIQIDLETGK THDARTIRYPDPLIKVNDTIQIDLETGKIT IKVNDTIQIDLETGKITDFIKFDTGNLCMV K V N G K I 0 0 1 2 0 1 1 1 0 2 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1444.7409 P62701 P62701 156 168 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.00014477 83.397 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1894 1.0833 10.086 4 Median 1.1623 1.1216 NaN 1 0 Median 1.1096 0.92605 NaN 1 0 Median 1.2171 1.165 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2703 1.0464 NaN 1 0 Median 44487000 20096000 24390000 4098600 1997200 2101400 16372000 7908500 8463200 4261000 1844200 2416800 0 0 0 0 0 0 19755000 8346400 11409000 36942 2593 38836 195769;195770;195771;195772 199117;199118;199119;199120 199120 4 VNDVCTNGQDLIK KHEAFETDFTVHKDRVNDVCTNGQDLIKKN DRVNDVCTNGQDLIKKNNHHEENISSKMKG R V N I K K 0 0 2 2 1 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1474.7086 A0A0D9SF54;Q13813 Q13813 1926 1938 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 9.0305E-07 100.72 By MS/MS 1 1.079 0.94511 NaN 1 Median NaN NaN NaN 0 0 Median 1.079 0.94511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6625000 2368200 4256800 0 0 0 6625000 2368200 4256800 0 0 0 0 0 0 0 0 0 0 0 0 36943 264;2838 38837 195773 199121 199121 1 VNDVLIVPYRK CTEEDVRKLFQPFGKVNDVLIVPYRKEAYL PFGKVNDVLIVPYRKEAYLEMEFKEAITAI K V N R K E 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 3 0 0 11 1 1314.766 Q14966 Q14966 703 713 ZNF638 Zinc finger protein 638 yes yes 3 0.00099854 48.442 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.89194 0.97516 17.743 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83347 0.99908 NaN 1 0 Median 0.98593 0.95181 NaN 1 0 Median 0.95451 1.08 NaN 1 0 Median 0.80903 0.71866 NaN 1 0 Median 15148000 7759500 7388300 0 0 0 0 0 0 11150000 5744000 5406500 268790 132770 136020 3326200 1657900 1668300 402240 224770 177470 36944 2903 38838 195774;195775;195776;195777 199122;199123;199124;199125 199122 4 VNEAAPEKPQDDSGTAGGISSTSASVNR QLMGHRPQLENLLCKVNEAAPEKPQDDSGT GTAGGISSTSASVNRYILQLAQEYCGDCKN K V N N R Y 4 1 2 2 0 1 2 3 0 1 0 1 0 0 2 5 2 0 0 2 0 0 28 1 2744.2849 Q5T4S7 Q5T4S7 3767 3794 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 3 2.7992E-40 98.812 By MS/MS By MS/MS 2 2 0.74875 0.72876 5.8559 4 Median 0.68704 0.70554 9.6042 2 0 Median 0.78021 0.72876 0.38137 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46724000 25237000 21487000 13472000 7773100 5698800 33252000 17463000 15788000 0 0 0 0 0 0 0 0 0 0 0 0 36945 3089 38839 195778;195779;195780;195781 199126;199127;199128;199129;199130;199131;199132;199133 199131 8 VNEAREELMR TQGLIFVVDSNDRERVNEAREELMRMLAED NDRERVNEAREELMRMLAEDELRDAVLLVF R V N M R M 1 2 1 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 1 1245.6136 P84077;P61204;F5H423 P84077 100 109 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2;3 1.2429E-05 140.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1 1.1343 1.0735 17.121 9 Median 1.0281 1.0776 0.54693 2 0 Median 1.1972 1.0952 7.6303 2 0 Median 1.288 1.3544 21.484 3 0 Median 1.1875 1.0633 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93938 0.79518 NaN 1 0 Median 176310000 85482000 90829000 136710000 67615000 69096000 25874000 11763000 14111000 10950000 4890600 6059000 2555600 1112500 1443100 0 0 0 221060 101400 119660 36946 2549 38840 195782;195783;195784;195785;195786;195787;195788;195789;195790 199134;199135;199136;199137;199138;199139;199140;199141;199142;199143 199142 10 VNEESLDR QPCSKLFSFYDYASKVNEESLDRILKDRRK FYDYASKVNEESLDRILKDRRKKVIGWYRF K V N D R I 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 960.45124 Q15018 Q15018 75 82 FAM175B BRISC complex subunit Abro1 yes yes 2 0.013601 52.716 By MS/MS By matching By matching 2 1 1 0.9691 0.93043 6.5189 4 Median 0.9691 0.9701 8.5666 2 0 Median 1.1042 0.94811 NaN 1 0 Median 0.84109 0.8868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4183600 2129400 2054300 2158600 1063800 1094800 514910 270080 244840 1510100 795480 714600 0 0 0 0 0 0 0 0 0 36947 2913 38841 195791;195792;195793;195794 199144;199145 199145 2 VNEFGESYEEK VYLYQRWLYPVDKRRVNEFGESYEEKATRA DKRRVNEFGESYEEKATRAPHTD_______ R V N E K A 0 0 1 0 0 0 4 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 11 0 1329.5725 Q96KA5;G5E9Z2 Q96KA5 520 530 CLPTM1L Cleft lip and palate transmembrane protein 1-like protein yes no 2 0.00011597 147.75 By MS/MS By MS/MS By matching 1 1 1 1.2342 1.1131 22.42 3 Median 0.86497 0.86062 NaN 1 0 Median 1.2506 1.1131 NaN 1 0 Median 1.2342 1.3453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25101000 11311000 13790000 5399700 2407300 2992300 17144000 7673700 9470500 2557300 1229700 1327500 0 0 0 0 0 0 0 0 0 36948 3691 38842 195795;195796;195797 199146;199147;199148 199148 3 VNEHEQDGNELQTTPEFR VCQMLGFTPGISRHKVNEHEQDGNELQTTP HEQDGNELQTTPEFRAHVAKKLGALLDSFI K V N F R A 0 1 2 1 0 2 4 1 1 0 1 0 0 1 1 0 2 0 0 1 0 0 18 0 2141.9614 F5H7W8;Q96C57;F5H3K2;E7ENF1;G5EA44 F5H7W8 97 114 C12orf43 Uncharacterized protein C12orf43 yes no 3 0.0001109 53.779 By MS/MS 1 0.64005 0.63054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64005 0.63054 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6899000 3741400 3157600 0 0 0 0 0 0 6899000 3741400 3157600 0 0 0 0 0 0 0 0 0 36949 1045 38843 195798 199149 199149 1 VNEISVEVDSDPR TRAKKKMVVMHPMPRVNEISVEVDSDPRAA PRVNEISVEVDSDPRAAYFRQAENGMYIRM R V N P R A 0 1 1 2 0 0 2 0 0 1 0 0 0 0 1 2 0 0 0 3 0 0 13 0 1457.6998 F8VPD4;P27708;H7C2E4 F8VPD4 2125 2137 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 1.3011E-06 122.42 By MS/MS By MS/MS 3 1 1.0642 1.0318 27.176 4 Median 1.2424 1.241 23.344 3 2 Median 0.88974 0.76057 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25039000 12230000 12809000 19774000 9578500 10196000 5264200 2651000 2613200 0 0 0 0 0 0 0 0 0 0 0 0 36950 1057 38844 195799;195800;195801;195802 199150;199151;199152;199153;199154;199155;199156;199157 199153 8 VNEIVETNRPDSK SRFIAAGRLHCKIDKVNEIVETNRPDSKNW DKVNEIVETNRPDSKNWQYQETIKKGDLLL K V N S K N 0 1 2 1 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 2 0 0 13 1 1499.758 Q15008 Q15008 350 362 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2;3 0.00088118 79.693 By MS/MS By MS/MS 2 2 0.91827 0.90007 5.9623 4 Median 0.82862 0.88749 9.9584 2 0 Median 0.96113 0.90007 2.3447 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11174000 5384300 5789900 5303200 2648900 2654400 5871000 2735500 3135600 0 0 0 0 0 0 0 0 0 0 0 0 36951 2911 38845 195803;195804;195805;195806 199158;199159;199160;199161;199162 199160 5 VNELREELQR ______________________________ VRRLKVNELREELQRRGLDTRGLKAELAER K V N Q R R 0 2 1 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 1 1284.6786 Q9BUJ2;M0R247;A0A087X1I2 Q9BUJ2 8 17 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 3 0.046174 28.956 By MS/MS By MS/MS 1 1 1.0634 1.0965 40.536 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3448 1.4604 NaN 1 0 Median 0.84088 0.82321 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1480000 689480 790530 0 0 0 0 0 0 628440 306510 321930 851580 382980 468600 0 0 0 0 0 0 36952 3840 38846 195807;195808 199163;199164 199164 2 VNEMIVTGQYGR DPVEETRHHAEVVKKVNEMIVTGQYGRLFA VKKVNEMIVTGQYGRLFAVVHFASRQWKVT K V N G R L 0 1 1 0 0 1 1 2 0 1 0 0 1 0 0 0 1 0 1 2 0 0 12 0 1365.6711 Q7Z2W9;F5H7V8 Q7Z2W9 83 94 MRPL21 39S ribosomal protein L21, mitochondrial yes no 2 0.00032419 148.32 By MS/MS By MS/MS By MS/MS 1 1 2 1.1307 1.0935 17.852 3 Median 1.1307 1.0935 NaN 1 0 Median 1.5031 1.2465 NaN 1 0 Median 0.9133 0.87562 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26105000 11263000 14843000 14177000 5967700 8209600 6500200 2557500 3942600 5427800 2737500 2690300 0 0 0 0 0 0 0 0 0 36953 3237 38847 195809;195810;195811;195812 199165;199166;199167;199168;199169 199169 5 VNENTHNLQIHAGDILK LLEPVPVSVTRCSFRVNENTHNLQIHAGDI ENTHNLQIHAGDILKFLKKKKPEDAFCVVG R V N L K F 1 0 3 1 0 1 1 1 2 2 2 1 0 0 0 0 1 0 0 1 0 0 17 0 1914.9912 J3KSH1;J3KS38;J3KRS2;J3QLK6;J3KRD0;Q86W34;J3KTM1 J3KSH1 141 157 AMZ2 Archaemetzincin-2 yes no 3;4 0.0071129 24.41 By MS/MS By matching 2 1 0.94512 0.97661 45.232 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97588 1.0105 4.8191 2 0 Median 0.54762 0.46264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23925000 11671000 12254000 0 0 0 0 0 0 22002000 10628000 11374000 1923600 1043200 880410 0 0 0 0 0 0 36954 1326 38848 195813;195814;195815 199170;199171;199172;199173 199173 4 VNEVGVDVNR KEELLNALYCEFINRVNEVGVDVNRAIAHP EFINRVNEVGVDVNRAIAHPYSQALIQYVC R V N N R A 0 1 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 4 0 0 10 0 1099.5622 Q7KZ85 Q7KZ85 966 975 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.00041397 116.05 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.89519 0.86241 9.0619 4 Median NaN NaN NaN 0 0 Median 1.0366 0.88424 NaN 1 1 Median 0.88866 0.98475 NaN 1 0 Median 0.90176 0.79576 NaN 1 0 Median 0.80493 0.84111 NaN 1 1 Median NaN NaN NaN 0 0 Median 13577000 7141700 6435300 0 0 0 4019500 2018200 2001400 3463100 1785000 1678100 971570 531420 440160 5122800 2807100 2315700 0 0 0 36955 3213 38849 195816;195817;195818;195819 199174;199175;199176;199177 199174 4 VNEVNQFAAK KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ AHEERVNEVNQFAAKLIQEQHPEEELIKTK R V N A K L 2 0 2 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 0 1118.572 A0A0D9SF54;Q13813 Q13813 205 214 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 7.9118E-18 157.86 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.0172 1.0387 44.162 9 Median NaN NaN NaN 0 0 Median 1.3051 1.1635 NaN 1 1 Median 0.93993 1.036 0.36364 2 2 Median 1.0171 0.98169 6.8567 3 2 Plateau 2.01 2.09 80.714 2 1 Median 1.2857 1.1013 NaN 1 0 Median 84252000 38484000 45768000 0 0 0 24340000 10351000 13989000 33681000 16887000 16794000 9002800 4390100 4612700 10164000 3762600 6401200 7064500 3093100 3971400 36956 264;2838 38850 195820;195821;195822;195823;195824;195825;195826;195827;195828;195829 199178;199179;199180;199181;199182;199183;199184;199185;199186 199181 9 VNEYVDAR ADEDMWDETELGLYKVNEYVDARDTNMGAW TELGLYKVNEYVDARDTNMGAWFEAQVVRV K V N A R D 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 8 0 964.46141 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 150 157 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 0.010382 58.981 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0185 0.93902 12.586 5 Median 1.0185 1.0014 NaN 1 0 Median 0.95784 0.83356 NaN 1 0 Median 0.87544 0.93902 NaN 1 1 Median 1.0186 0.87752 NaN 1 0 Median 1.0864 1.152 NaN 1 1 Median NaN NaN NaN 0 0 Median 10218000 4858900 5359500 976150 448270 527880 1344200 643500 700700 2739600 1383900 1355800 1520500 755310 765240 3638000 1628000 2010000 0 0 0 36957 20 38851 195830;195831;195832;195833;195834 199187;199188;199189 199189 3 VNFAMNVGK KDPVQEAWAEDVDLRVNFAMNVGKARGFFK EDVDLRVNFAMNVGKARGFFKKGDVVIVLT R V N G K A 1 0 2 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 2 0 0 9 0 978.49569 P14618;B4DNK4 P14618 490 498 PKM Pyruvate kinase PKM;Pyruvate kinase no no 1;2 3.7145E-05 153.73 By MS/MS By MS/MS By MS/MS By MS/MS 12 15 1 3 1.1651 1.0203 15.185 30 Median 1.2184 1.1369 10.788 12 2 Median 1.1563 0.96681 10.164 14 2 Median 1.2307 1.1902 NaN 1 0 Median 0.96662 0.82357 5.6857 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1265100000 556510000 708550000 724880000 312470000 412420000 503610000 226750000 276860000 27461000 12888000 14573000 9105100 4403300 4701800 0 0 0 0 0 0 36958 2005 38852;38853 195835;195836;195837;195838;195839;195840;195841;195842;195843;195844;195845;195846;195847;195848;195849;195850;195851;195852;195853;195854;195855;195856;195857;195858;195859;195860;195861;195862;195863;195864;195865 199190;199191;199192;199193;199194;199195;199196;199197;199198;199199;199200;199201;199202;199203;199204;199205;199206;199207;199208;199209;199210;199211;199212;199213;199214;199215;199216;199217;199218;199219 199216 792 30 VNFATWNQAR TTKKYNIMAFNAADKVNFATWNQARLERDL NAADKVNFATWNQARLERDLSNKKIYQEEE K V N A R L 2 1 2 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 10 0 1205.5942 P35269;M0QXD6;M0R0Z3;M0R0R9 P35269 37 46 GTF2F1 General transcription factor IIF subunit 1 yes no 2 0.046577 29.087 By matching By MS/MS By matching 1 1 1 0.91252 0.82026 3.3262 3 Median 0.8458 0.79719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98036 0.82026 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91252 0.85185 NaN 1 0 Median 7952000 4311800 3640200 6489400 3517500 2972000 0 0 0 0 0 0 953520 505590 447940 0 0 0 509080 288800 220290 36959 2240 38854 195866;195867;195868 199220 199220 1 VNFDDYTVNLGGLK IFEQPESVVNTMRGRVNFDDYTVNLGGLKD RVNFDDYTVNLGGLKDHIKEIQRCRRLILI R V N L K D 0 0 2 2 0 0 0 2 0 0 2 1 0 1 0 0 1 0 1 2 0 0 14 0 1553.7726 Q06210 Q06210 362 375 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0024852 42.743 By MS/MS By MS/MS 2 2 1.0796 0.92998 58.434 4 Median 0.90816 0.93794 101.13 2 1 Median 1.0796 0.92998 4.0517 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5547000 2833700 2713300 2824800 1596800 1227900 2722200 1236900 1485300 0 0 0 0 0 0 0 0 0 0 0 0 36960 2723 38855 195869;195870;195871;195872 199221;199222 199222 2 VNFDDYTVNLGGLKDHIK IFEQPESVVNTMRGRVNFDDYTVNLGGLKD DDYTVNLGGLKDHIKEIQRCRRLILIACGT R V N I K E 0 0 2 3 0 0 0 2 1 1 2 2 0 1 0 0 1 0 1 2 0 0 18 1 2047.0375 Q06210 Q06210 362 379 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.0027376 26.474 By MS/MS 1 1.1036 1.1371 NaN 1 Median 1.1036 1.1371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5690200 2725200 2965000 5690200 2725200 2965000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36961 2723 38856 195873 199223 199223 1 VNFHMFDVGGQR VLTSGIFETKFQVDKVNFHMFDVGGQRDER VDKVNFHMFDVGGQRDERRKWIQCFNDVTA K V N Q R D 0 1 1 1 0 1 0 2 1 0 0 0 1 2 0 0 0 0 0 2 0 0 12 0 1405.6561 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A590UJQ9;A0A590UKB4;A0A590UJG5;A0A590UJJ0;A0A590UJI6;A0A590UJR6;A0A590UJQ2;A0A590UJS2;P38405;K7EPE2;K7EQ80 Q5JWF2 860 871 GNAS;GNAL Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(olf) subunit alpha yes no 3 0.00059883 49.28 By MS/MS By MS/MS 1 2 1.2986 1.4097 28.298 3 Median 0.86669 0.86574 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3508 1.4133 0.36589 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12550000 5687000 6862700 2965900 1582500 1383400 0 0 0 9583800 4104600 5479200 0 0 0 0 0 0 0 0 0 36962 2616 38857 195874;195875;195876 199224;199225;199226;199227 199227 4 VNFLPEIITLSK STRVRGRTGNVLKLKVNFLPEIITLSKEVR KLKVNFLPEIITLSKEVRNLKWLGFRVPLA K V N S K E 0 0 1 0 0 0 1 0 0 2 2 1 0 1 1 1 1 0 0 1 0 0 12 0 1372.7966 Q14204 Q14204 737 748 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 3.7563E-05 96.015 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.9408 0.89029 8.3146 6 Median 0.90964 0.88323 0.078664 2 0 Median 1.031 0.90768 14.142 2 0 Median 0.83947 0.89691 NaN 1 0 Median 1.0554 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50169000 25869000 24300000 25170000 13321000 11849000 8391700 3976100 4415600 14151000 7379500 6771900 2456500 1192400 1264000 0 0 0 0 0 0 36963 2865 38858 195877;195878;195879;195880;195881;195882 199228;199229;199230;199231;199232;199233;199234;199235;199236;199237;199238 199234 11 VNFLVNAAGINR DVQNTFEELEKHLGRVNFLVNAAGINRDGL LGRVNFLVNAAGINRDGLLVRTKTEDMVSQ R V N N R D 2 1 3 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 2 0 0 12 0 1286.7095 Q8N4T8;H0Y962 Q8N4T8 77 88 CBR4 Carbonyl reductase family member 4 yes no 2 7.1992E-05 93.551 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 1 2 1 1 1.186 1.0785 30.985 7 Median 0.84448 0.80094 NaN 1 0 Median 1.8417 1.5741 NaN 1 0 Median 0.83666 0.80158 NaN 1 0 Median 1.551 1.335 30.173 2 0 Median 1.3289 1.2992 NaN 1 0 Median 1.0248 0.87313 NaN 1 0 Median 20151000 10745000 9406200 12113000 6682700 5430800 563930 216680 347240 4856300 2732600 2123700 1053600 473580 580020 1366100 537630 828490 197390 101430 95957 36964 3375 38859 195883;195884;195885;195886;195887;195888;195889 199239;199240;199241;199242;199243 199240 5 VNFPENGFLSPDKLSLLEK YRRPYEKGRLIIEFKVNFPENGFLSPDKLS ENGFLSPDKLSLLEKLLPERKEVEETDEMD K V N E K L 0 0 2 1 0 0 2 1 0 0 4 2 0 2 2 2 0 0 0 1 0 0 19 1 2146.131 P31689 P31689 326 344 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.036269 13.427 By MS/MS By matching By matching 1 1 1 0.97021 0.93911 16.525 3 Median 0.97021 0.93911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7893 0.74969 NaN 1 0 Median 0.97021 1.0346 NaN 1 0 Median NaN NaN NaN 0 0 Median 8263300 4022400 4241000 1446600 598300 848260 0 0 0 0 0 0 4301300 2380900 1920500 2515400 1043200 1472200 0 0 0 36965 2204 38860 195890;195891;195892 199244;199245 199245 2 VNFSEEGETEEDDQDSSHSSVTTVK PLRYPRYEATSVQQKVNFSEEGETEEDDQD EDDQDSSHSSVTTVKARSRDSDESGDKTTR K V N V K A 0 0 1 3 0 1 5 1 1 0 0 1 0 1 0 5 3 0 0 3 0 0 25 0 2755.158 A0A0A0MSK5;Q5JTV8;H0YD16;J3KN66 J3KN66 213 237 TOR1AIP1 Torsin-1A-interacting protein 1 no no 3 2.6778E-17 67.614 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0881 1.0286 7.6929 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0322 1.0012 NaN 1 0 Median 1.187 0.99932 14.965 2 0 Median 1.0881 1.0368 NaN 1 0 Median 1.2178 1.0286 NaN 1 0 Median 30170000 14323000 15848000 0 0 0 0 0 0 15882000 7476000 8406300 6083200 2578900 3504300 7003000 3659100 3344000 1202000 608730 593230 36966 182;1302 38861 195893;195894;195895;195896;195897 199246;199247;199248;199249;199250 199246 5 VNFTVDQIR ______________________________ ______________________________ M V N I R A 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 9 0 1090.5771 P13639 P13639 2 10 EEF2 Elongation factor 2 yes yes 2 1.8617E-05 155.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 7 4 8 1 2 1.0611 0.91476 29.977 33 Median 1.1763 1.1341 15.338 11 2 Median 0.9806 0.80457 8.3523 7 0 Median 1.2241 1.2559 40.663 4 0 Median 0.91154 0.72316 34.446 8 3 Median 1.9785 2.0199 NaN 1 0 Median 1.0599 0.8087 6.4595 2 0 Median 828970000 389460000 439510000 430820000 194740000 236080000 223770000 113510000 110270000 95874000 42279000 53595000 65904000 32794000 33110000 2996400 1061200 1935200 9600300 5073800 4526500 36967 1992 38862;38863 195898;195899;195900;195901;195902;195903;195904;195905;195906;195907;195908;195909;195910;195911;195912;195913;195914;195915;195916;195917;195918;195919;195920;195921;195922;195923;195924;195925;195926;195927;195928;195929;195930 199251;199252;199253;199254;199255;199256;199257;199258;199259;199260;199261;199262;199263;199264;199265;199266;199267;199268;199269;199270;199271;199272;199273;199274;199275;199276;199277;199278 199255 28 VNGEVVQSGNTNQMVFK KDSVADPHNLKICCRVNGEVVQSGNTNQMV GEVVQSGNTNQMVFKTEDLIAWVSQFVTFY R V N F K T 0 0 3 0 0 2 1 2 0 0 0 1 1 1 0 1 1 0 0 4 0 0 17 0 1849.8992 Q96GK7 Q96GK7 239 255 FAHD2A Fumarylacetoacetate hydrolase domain-containing protein 2A yes yes 2 1.9441E-13 115.14 By MS/MS By matching 1 1 1.0189 0.89388 3.8508 2 Median 1.007 0.91855 NaN 1 0 Median 1.031 0.86987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18823000 10173000 8650400 17174000 9357100 7817000 1649200 815780 833430 0 0 0 0 0 0 0 0 0 0 0 0 36968 3658 38864 195931;195932 199279;199280 199279 2 VNGEVVQSSNTNQMVFK KDSVADPHNLKICCRVNGEVVQSSNTNQMV GEVVQSSNTNQMVFKTEDLIAWVSQFVTFY R V N F K T 0 0 3 0 0 2 1 1 0 0 0 1 1 1 0 2 1 0 0 4 0 0 17 0 1879.9098 Q6P2I3 Q6P2I3 239 255 FAHD2B Fumarylacetoacetate hydrolase domain-containing protein 2B yes yes 2 4.0506E-07 90.653 By MS/MS 1 0.83281 0.78796 NaN 1 Median 0.83281 0.78796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5904500 3115000 2789400 5904500 3115000 2789400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36969 3156 38865 195933 199281;199282 199281 2 VNGGLNLSR ARIKNAGGKVTMDGRVNGGLNLSRAIGDHF VTMDGRVNGGLNLSRAIGDHFYKRNKNLPP R V N S R A 0 1 2 0 0 0 0 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 928.50903 O15355 O15355 390 398 PPM1G Protein phosphatase 1G yes yes 2 0.018263 65.305 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 36970 1538 38866 195934 199283 199283 1 VNGRPLEMIEPR ATAVAHCKRGNGLIKVNGRPLEMIEPRTLQ LIKVNGRPLEMIEPRTLQYKLLEPVLLLGK K V N P R T 0 2 1 0 0 0 2 1 0 1 1 0 1 0 2 0 0 0 0 1 0 0 12 1 1409.7449 P62249;M0R3H0;M0R1M5;Q6IPX4 P62249 34 45 RPS16 40S ribosomal protein S16 yes no 2;3 1.1921E-06 111.79 By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 0.78098 0.79561 12.563 9 Median 0.75746 0.79395 4.3254 2 0 Median 0.90889 0.79561 2.7314 3 0 Median 0.78442 0.85187 22.902 3 0 Plateau NaN NaN NaN 0 0 Median 0.63525 0.71391 NaN 1 0 Median NaN NaN NaN 0 0 Median 160310000 87887000 72424000 104660000 56649000 48012000 22014000 11222000 10793000 33013000 19684000 13329000 0 0 0 622410 332330 290080 0 0 0 36971 2574 38867;38868 195935;195936;195937;195938;195939;195940;195941;195942;195943 199284;199285;199286;199287;199288;199289;199290;199291;199292;199293;199294;199295;199296;199297;199298 199296 1244 15 VNHVTLSQPK YTEFTPTEKDEYACRVNHVTLSQPKIVKWD EYACRVNHVTLSQPKIVKWDRDM_______ R V N P K I 0 0 1 0 0 1 0 0 1 0 1 1 0 0 1 1 1 0 0 2 0 0 10 0 1121.6193 H0YLF3;F5H6I0;P61769 H0YLF3 54 63 B2M Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3 yes no 2 0.00043466 74.464 By matching By MS/MS By matching 1 1 1 0.90539 0.89011 8.1792 3 Median 0.84938 0.78304 NaN 1 0 Median 1.078 0.89011 NaN 1 0 Median 0.90539 0.9117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8712100 3945800 4766300 2991900 1035900 1956000 5527000 2798400 2728600 193170 111530 81647 0 0 0 0 0 0 0 0 0 36972 1043 38869 195944;195945;195946 199299;199300 199300 2 VNIAFNYDMPEDSDTYLHR LVATNLFGRGMDIERVNIAFNYDMPEDSDT FNYDMPEDSDTYLHRVARAGRFGTKGLAIT R V N H R V 1 1 2 3 0 0 1 0 1 1 1 0 1 1 1 1 1 0 2 1 0 0 19 0 2299.0215 H0Y400;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3 Q13838 356 374 DDX39B Spliceosome RNA helicase DDX39B no no 2;3 2.6268E-30 182.08 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 8 5 6 4 0.91088 0.87776 20.559 25 Median 0.95682 0.94299 NaN 1 0 Median 1.1361 0.98461 NaN 1 0 Median 0.87463 0.86528 27.062 8 1 Median 1.12 0.96228 11.714 5 0 Median 0.88065 0.90278 12.879 6 0 Median 0.86862 0.73005 16.874 4 0 Median 706130000 371150000 334980000 1080400 604530 475880 859210 414080 445130 588510000 315860000 272650000 43973000 18838000 25135000 69870000 34472000 35398000 1833700 959440 874270 36973 2842;1146 38870;38871 195947;195948;195949;195950;195951;195952;195953;195954;195955;195956;195957;195958;195959;195960;195961;195962;195963;195964;195965;195966;195967;195968;195969;195970;195971 199301;199302;199303;199304;199305;199306;199307;199308;199309;199310;199311;199312;199313;199314;199315;199316;199317;199318;199319;199320;199321;199322 199303 385 22 VNIDDLVK LTSLAAALDENKDGKVNIDDLVKVIELVDK DENKDGKVNIDDLVKVIELVDKEDVHISTS K V N V K V 0 0 1 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 914.5073 O95202 O95202 683 690 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 2 0.066123 31.303 By MS/MS By matching By matching By matching By matching 1 1 1 1 1 1.0768 1.0625 14.696 5 Median 1.0768 1.0625 NaN 1 0 Median 1.3927 1.2377 NaN 1 0 Median 1.1346 1.1385 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93513 0.89747 NaN 1 0 Median 1.0392 0.8856 NaN 1 0 Median 10658000 4552500 6105500 1934200 925060 1009100 1510000 642800 867180 5088700 1945500 3143200 0 0 0 1702200 843940 858280 423000 195230 227770 36974 1754 38872 195972;195973;195974;195975;195976 199323 199323 1 VNIFGVESGK SPDSQYLATGTHVGKVNIFGVESGKKEYSL THVGKVNIFGVESGKKEYSLDTRGKFILSI K V N G K K 0 0 1 0 0 0 1 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 10 0 1048.5553 H0YL19;H0YN81;Q9GZS3;H0YMF9 H0YL19 37 46 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.015167 55.549 By MS/MS 1 1.4327 1.3751 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4327 1.3751 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6045700 2420300 3625400 0 0 0 0 0 0 6045700 2420300 3625400 0 0 0 0 0 0 0 0 0 36975 1194 38873 195977 199324 199324 1 VNIFGVESGKK SPDSQYLATGTHVGKVNIFGVESGKKEYSL HVGKVNIFGVESGKKEYSLDTRGKFILSIA K V N K K E 0 0 1 0 0 0 1 2 0 1 0 2 0 1 0 1 0 0 0 2 0 0 11 1 1176.6503 H0YL19;H0YN81;Q9GZS3;H0YMF9 H0YL19 37 47 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.00017103 114.5 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.99282 0.95071 7.4399 4 Median 0.92851 0.90113 NaN 1 1 Median 0.99457 0.89569 NaN 1 0 Median 0.99106 1.0367 NaN 1 0 Median 1.1423 1.003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37764000 19213000 18551000 16723000 8994300 7729000 7522400 3778200 3744200 6625100 3290100 3335000 6893600 3150700 3742900 0 0 0 0 0 0 36976 1194 38874 195978;195979;195980;195981 199325;199326;199327;199328 199325 4 VNIIGEVVDQGSTNLK RGLSFSEATASNLVKVNIIGEVVDQGSTNL NIIGEVVDQGSTNLKIDHTGFSPHAAIYST K V N L K I 0 0 2 1 0 1 1 2 0 2 1 1 0 0 0 1 1 0 0 3 0 0 16 0 1684.8996 Q9UEY8 Q9UEY8 192 207 ADD3 Gamma-adducin yes yes 2;3 1.8873E-10 134.08 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 4 2 1 1.0205 1.0113 22.936 9 Median 1.1888 1.1672 NaN 1 0 Median 1.1865 1.0614 NaN 1 0 Median 0.7477 0.78209 32.285 4 1 Median 1.0641 0.91861 13.59 2 0 Median 1.0205 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median 31858000 18811000 13048000 2262100 1009500 1252600 1098800 515020 583800 25508000 15730000 9778500 1487500 703480 783990 1501500 852880 648630 0 0 0 36977 4257 38875 195982;195983;195984;195985;195986;195987;195988;195989;195990 199329;199330;199331;199332;199333;199334 199331 6 VNIIPLIAK LKPLDIEFMKRLHEKVNIIPLIAKADTLTP KRLHEKVNIIPLIAKADTLTPEECQQFKKQ K V N A K A 1 0 1 0 0 0 0 0 0 3 1 1 0 0 1 0 0 0 0 1 0 0 9 0 979.643 E7ES33;E7EPK1;Q16181;G3V1Q4;A0A0U1RRH9;A0A0U1RRE1;Q6ZU15 E7ES33 167 175 SEPT7;SEPT14 Septin-7;Septin-14 yes no 2 0.010073 48.561 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 10 5 5 4 0.91227 0.88525 13.773 26 Median 0.87928 0.82766 1.6193 2 0 Median NaN NaN NaN 0 0 Median 0.91227 0.88342 8.0915 10 0 Median 1.2113 1.0646 4.2219 5 0 Median 0.85753 0.81756 10.808 5 0 Median 1.1473 0.95506 20.124 4 0 Median 539090000 265140000 273950000 11555000 6522000 5033000 0 0 0 244310000 127730000 116580000 267490000 122510000 144980000 12327000 6689200 5638100 3406800 1687300 1719500 36978 870 38876 195991;195992;195993;195994;195995;195996;195997;195998;195999;196000;196001;196002;196003;196004;196005;196006;196007;196008;196009;196010;196011;196012;196013;196014;196015;196016 199335;199336;199337;199338;199339;199340;199341;199342;199343;199344;199345;199346;199347;199348 199344 14 VNIIPVIAK LKTLDLLTMKNLDSKVNIIPVIAKADTVSK KNLDSKVNIIPVIAKADTVSKTELQKFKIK K V N A K A 1 0 1 0 0 0 0 0 0 3 0 1 0 0 1 0 0 0 0 2 0 0 9 0 965.62735 E7EW69;B5ME97;Q9P0V9;E7EX04;F5GYV2;F5H1F2 E7EW69 201 209 SEPT10 Septin-10 yes no 2 0.0063698 54.774 By matching By MS/MS By matching 2 3 2 0.87374 0.84773 18.822 7 Median NaN NaN NaN 0 0 Median 0.98001 0.88909 28.827 2 0 Median 0.85179 0.84773 4.8108 3 0 Median 1.1682 1.0135 30.195 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14905000 7219500 7685900 0 0 0 597960 305310 292650 12756000 6159100 6597100 1551200 755050 796120 0 0 0 0 0 0 36979 626 38877 196017;196018;196019;196020;196021;196022;196023 199349;199350;199351 199350 3 VNIISVTNK FSKDGTLFAWGNGEKVNIISVTNKGLLHSF WGNGEKVNIISVTNKGLLHSFDLLKAVCLE K V N N K G 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 2 0 0 9 0 986.57605 Q9BY44;C9IZE1;H7C5Q3 Q9BY44 59 67 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes no 2 0.0032693 66.27 By MS/MS By MS/MS By matching 1 1 1 1.2432 1.1946 12.876 3 Median 1.2432 1.1946 NaN 1 0 Median 1.1827 1.0107 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5148 1.3019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8304300 3704100 4600200 3685000 1658700 2026300 3972900 1688200 2284700 0 0 0 646400 357150 289250 0 0 0 0 0 0 36980 3886 38878 196024;196025;196026 199352;199353 199352 2 VNILEVASGAVLR LDQTGQHLFCVCGTRVNILEVASGAVLRSL TRVNILEVASGAVLRSLEQEDQEDITAFDL R V N L R S 2 1 1 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 3 0 0 13 0 1339.7823 Q12788 Q12788 47 59 TBL3 Transducin beta-like protein 3 yes yes 2 0.00040822 74.162 By matching By MS/MS By matching By matching 2 2 1 1 1.0874 1.1605 30.095 6 Median NaN NaN NaN 0 0 Median 1.6867 1.4386 9.1746 2 0 Median 1.063 1.1605 21.171 2 0 Median NaN NaN NaN 0 0 Median 0.7781 0.81497 NaN 1 0 Median 0.93741 0.73694 NaN 1 0 Median 9697300 4031400 5665900 0 0 0 6338800 2448500 3890300 2688300 1226300 1462000 0 0 0 318220 173450 144780 352040 183240 168800 36981 2757 38879 196027;196028;196029;196030;196031;196032 199354;199355 199354 2 VNILGEVVEK KGVSCSEVTASSLIKVNILGEVVEKGSSCF SSLIKVNILGEVVEKGSSCFPVDTTGFCLH K V N E K G 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 3 0 0 10 0 1098.6285 P35612;C9J080;C9JTM0 P35612 188 197 ADD2 Beta-adducin yes no 2 0.011773 42.19 By MS/MS 1 1.1244 1.2289 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1244 1.2289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9484700 4764100 4720600 0 0 0 0 0 0 9484700 4764100 4720600 0 0 0 0 0 0 0 0 0 36982 2248 38880 196033 199356;199357 199357 2 VNILSDMHLR TQLMILSASEATVKRVNILSDMHLRSIRTK ATVKRVNILSDMHLRSIRTKLMLMSRNEEA R V N L R S 0 1 1 1 0 0 0 0 1 1 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1196.6336 B4DXZ6;P51114;E7EU85;E9PFF5;C9JZE0;C9JY20 B4DXZ6 168 177 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 2;3 0.000505 62.303 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.3793 1.2003 26.478 7 Median 1.3044 1.3139 37.072 2 1 Median 1.5305 1.3685 20.586 2 0 Median 1.5119 1.5963 40.326 2 0 Median 1.3793 1.1576 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12817000 4636700 8180100 4216100 1734400 2481600 623020 247530 375490 7260300 2377600 4882700 717430 277170 440260 0 0 0 0 0 0 36983 608 38881;38882 196034;196035;196036;196037;196038;196039;196040 199358;199359;199360;199361 199360 235 4 VNINGGAVSLGHPIGMSGAR VVLANIKMLEIDPQKVNINGGAVSLGHPIG GAVSLGHPIGMSGARIVGHLTHALKQGEYG K V N A R I 2 1 2 0 0 0 0 5 1 2 1 0 1 0 1 2 0 0 0 2 0 0 20 0 1905.9843 P24752 P24752 374 393 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2;3 4.7319E-21 158.31 By MS/MS By MS/MS By MS/MS 2 2 1 0.82468 0.89004 10.625 5 Median 0.83406 0.8333 9.3147 2 0 Median NaN NaN NaN 0 0 Median 0.8001 0.8773 4.6635 2 0 Median 1.2089 1.0432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130100000 71148000 58953000 35025000 19117000 15909000 0 0 0 92038000 50808000 41229000 3037600 1222600 1814900 0 0 0 0 0 0 36984 2126 38883 196041;196042;196043;196044;196045 199362;199363;199364;199365;199366;199367;199368 199366 7 VNIVDLQQVINVDLIHIENR ISKEMRDELHVRGGRVNIVDLQQVINVDLI LQQVINVDLIHIENRIGDIIKSEKHVQLVL R V N N R I 0 1 3 2 0 2 1 0 1 4 2 0 0 0 0 0 0 0 0 4 0 0 20 0 2343.291 O94874 O94874 77 96 UFL1 E3 UFM1-protein ligase 1 yes yes 3 0.0019876 38.577 By MS/MS 1 1.1135 0.96591 NaN 1 Median NaN NaN NaN 0 0 Median 1.1135 0.96591 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2548500 1153700 1394800 0 0 0 2548500 1153700 1394800 0 0 0 0 0 0 0 0 0 0 0 0 36985 1732 38884 196046 199369 199369 1 VNIVFNYDMPEDSDTYLHR LVATNLFGRGMDIERVNIVFNYDMPEDSDT FNYDMPEDSDTYLHRVARAGRFGTKGLAIT R V N H R V 0 1 2 3 0 0 1 0 1 1 1 0 1 1 1 1 1 0 2 2 0 0 19 0 2327.0528 O00148 O00148 355 373 DDX39A ATP-dependent RNA helicase DDX39A yes yes 2;3 5.6812E-10 94.725 By MS/MS By matching By matching 2 1 1 0.8619 0.81972 4.2794 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82711 0.81972 0.95372 2 0 Median 0.93082 0.81172 NaN 1 0 Median 0.88107 0.88897 NaN 1 0 Median NaN NaN NaN 0 0 Median 29568000 15991000 13578000 0 0 0 0 0 0 27220000 14767000 12453000 924450 484620 439830 1424100 738990 685060 0 0 0 36986 1441 38885;38886 196047;196048;196049;196050 199370;199371;199372 199371 463 3 VNIVPLIAK LRPVDVGFMKALHEKVNIVPLIAKADCLVP KALHEKVNIVPLIAKADCLVPSEIRKLKER K V N A K A 1 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 0 0 0 2 0 0 9 0 965.62735 C9JM82;B4DJ62;G3XAH0;Q99719;E7EPG2;E7EX32;F8W9E5;E7EQM7 C9JM82 135 143 SEPT5 Septin-5 yes no 2 0.032793 35.618 By MS/MS 1 0.64986 0.68467 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64986 0.68467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5651800 3453500 2198300 0 0 0 0 0 0 5651800 3453500 2198300 0 0 0 0 0 0 0 0 0 36987 592 38887 196051 199373;199374 199374 2 VNIVPVIAK LKPLDVAFMKAIHNKVNIVPVIAKADTLTL KAIHNKVNIVPVIAKADTLTLKERERLKKR K V N A K A 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 3 0 0 9 0 951.6117 Q15019;B5MCX3;H7C2Y0;C9J2Q4;H7C310 Q15019 175 183 SEPT2 Septin-2 yes no 2 0.0030211 67.981 By MS/MS By MS/MS By MS/MS 2 1 1 0.95 0.93758 14.773 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95 0.93758 1.8973 2 0 Median 1.1428 0.97923 NaN 1 0 Median 0.71447 0.71053 NaN 1 0 Median NaN NaN NaN 0 0 Median 236990000 118110000 118880000 0 0 0 0 0 0 199270000 100490000 98777000 33438000 15426000 18013000 4280300 2188700 2091600 0 0 0 36988 2914 38888 196052;196053;196054;196055 199375;199376;199377;199378;199379;199380;199381;199382;199383 199376 9 VNKEESLQMQVQDILEQNEALK LEQRLMQLMESEQKRVNKEESLQMQVQDIL QMQVQDILEQNEALKAQIQQFHSQIAAQTS R V N L K A 1 0 2 1 0 4 4 0 0 1 3 2 1 0 0 1 0 0 0 2 0 0 22 1 2585.3007 Q86UP2 Q86UP2 561 582 KTN1 Kinectin yes yes 3 0.00012915 33.348 By MS/MS 1 1.3014 1.2162 NaN 1 Median NaN NaN NaN 0 0 Median 1.3014 1.2162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2453200 1046500 1406700 0 0 0 2453200 1046500 1406700 0 0 0 0 0 0 0 0 0 0 0 0 36989 3280 38889 196056 199384 199384 1 VNKPMELYYAPTK NGSFSLELVSEKYWKVNKPMELYYAPTKEH WKVNKPMELYYAPTKEHK____________ K V N T K E 1 0 1 0 0 0 1 0 0 0 1 2 1 0 2 0 1 0 2 1 0 0 13 1 1552.796 Q99496 Q99496 321 333 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 2;3 0.00043839 62.408 By MS/MS 2 0.76876 0.83773 9.0359 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76876 0.83773 9.0359 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88849000 46873000 41976000 0 0 0 0 0 0 88849000 46873000 41976000 0 0 0 0 0 0 0 0 0 36990 3748 38890 196057;196058 199385;199386;199387;199388 199386 4 VNLAELFK AIPAVEVFEGEPGNKVNLAELFKGKKGVLF EGEPGNKVNLAELFKGKKGVLFGVPGAFTP K V N F K G 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 932.53312 P30044 P30044 76 83 PRDX5 Peroxiredoxin-5, mitochondrial yes yes 2 0.0038087 85.212 By MS/MS By matching By matching 1 2 1 1.1411 1.0412 24.789 4 Median 0.87303 0.82139 NaN 1 0 Median 1.5149 1.283 0.94143 2 0 Median 0.87468 0.85054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39945000 20088000 19858000 29455000 15294000 14160000 6383800 2485900 3897900 4106600 2307300 1799300 0 0 0 0 0 0 0 0 0 36991 2181 38891 196059;196060;196061;196062 199389;199390 199390 2 VNLAIWDTAGQER QASFLTKKLNIGGKRVNLAIWDTAGQERFH KRVNLAIWDTAGQERFHALGPIYYRDSNGA R V N E R F 2 1 1 1 0 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 13 0 1471.7419 Q9UL25 Q9UL25 68 80 RAB21 Ras-related protein Rab-21 yes yes 2 6.4335E-05 127.42 By MS/MS By MS/MS 1 2 1.0813 1.0272 74.332 3 Median 1.0813 1.0272 NaN 1 0 Median 0.62004 0.60863 96.044 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26110000 11960000 14150000 22075000 10299000 11776000 4035600 1661200 2374300 0 0 0 0 0 0 0 0 0 0 0 0 36992 4320 38892 196063;196064;196065 199391;199392;199393 199392 3 VNLAKPMR IDNMNESELFGRTIRVNLAKPMRIKEGSSR LFGRTIRVNLAKPMRIKEGSSRPVWSDDDW R V N M R I 1 1 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 8 1 927.53241 Q9UNP9;E9PKY5;E9PK21;E9PIB0 Q9UNP9 79 86 PPIE Peptidyl-prolyl cis-trans isomerase E;Peptidyl-prolyl cis-trans isomerase yes no 2 0.052581 57.559 By MS/MS By matching By matching 1 1 1 0.77219 0.76137 12.218 3 Plateau 0.77219 0.76137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67884 0.64063 NaN 1 0 Median 0.75652 0.81121 NaN 1 0 Median NaN NaN NaN 0 0 Median 2169100 1039800 1129300 879330 459180 420150 0 0 0 0 0 0 569860 262150 307710 719900 318450 401450 0 0 0 36993 4347 38893 196066;196067;196068 199394 199394 1 VNLEESSGVENSPAGARPK YQALVHDVLDFHLNRVNLEESSGVENSPAG ESSGVENSPAGARPKRKNKKSYDLTPVDKF R V N P K R 2 1 2 0 0 0 3 2 0 0 1 1 0 0 2 3 0 0 0 2 0 0 19 1 1939.9599 Q8WVM8 Q8WVM8 292 310 SCFD1 Sec1 family domain-containing protein 1 yes yes 3 7.1027E-07 56.407 By MS/MS By MS/MS By matching 1 1 1 0.73467 0.67275 45.868 3 Median 0.39934 0.40099 NaN 1 0 Median 0.73467 0.67275 NaN 1 0 Median 0.94219 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12763000 7411400 5351800 6371100 4199600 2171500 3877800 2223700 1654100 2514200 988060 1526200 0 0 0 0 0 0 0 0 0 36994 3503 38894 196069;196070;196071 199395;199396 199395 2 VNLEVIKPWITK ______________________________ MSKVNLEVIKPWITKRVTEILGFEDDVVIE K V N T K R 0 0 1 0 0 0 1 0 0 2 1 2 0 0 1 0 1 1 0 2 0 0 12 1 1438.8548 M0R088;E9PCT1;A9Z1X7;Q8IYB3;M0R1E7;M0QXG5 M0R088 4 15 SRRM1 Serine/arginine repetitive matrix protein 1 yes no 2;3 0.02649 40.589 By matching By matching By MS/MS By matching By matching 3 2 2 2 2 0.9253 0.92849 28.462 11 Median 0.81322 0.84746 12.358 3 0 Median 1.0414 0.98145 7.4656 2 0 Median 0.86571 0.99405 15.938 2 0 Median 0.91354 0.87021 9.1673 2 0 Median 1.3556 1.4156 62.655 2 0 Median NaN NaN NaN 0 0 Median 16491000 8813300 7677500 2487200 1289800 1197500 1642700 809700 832980 10158000 5512600 4645400 307230 142420 164810 1895700 1058900 836860 0 0 0 36995 553 38895 196072;196073;196074;196075;196076;196077;196078;196079;196080;196081;196082 199397;199398 199397 2 VNLFPGLSPSALK QSRRTRMSLGTKGLKVNLFPGLSPSALKAK LKVNLFPGLSPSALKAKLRPRNRSAEEGEL K V N L K A 1 0 1 0 0 0 0 1 0 0 3 1 0 1 2 2 0 0 0 1 0 0 13 0 1341.7656 Q9C0C2 Q9C0C2 1645 1657 TNKS1BP1 182 kDa tankyrase-1-binding protein yes yes 2 0.0038536 42.743 By MS/MS By matching 1 1 0.76346 0.70312 26.098 2 Median 0.6201 0.58463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93997 0.84561 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2147400 1115800 1031600 1948900 1026400 922440 0 0 0 0 0 0 198490 89340 109150 0 0 0 0 0 0 36996 3903 38896 196083;196084 199399;199400 199400 2 VNLFTDFDK KNADGYKLDKQHTFRVNLFTDFDKYMTISD KQHTFRVNLFTDFDKYMTISDEWDIPEKQP R V N D K Y 0 0 1 2 0 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 9 0 1097.5393 P55884;C9JZG1 P55884 263 271 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 0.010372 48.283 By MS/MS By MS/MS By matching 1 2 1 1.1901 1.2394 79.475 4 Median 1.2483 1.2317 NaN 1 0 Median 2.6261 2.2732 123.57 2 1 Median 1.1346 1.2471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17288000 5761400 11527000 3458300 1656500 1801800 10294000 3176200 7117800 3535700 928700 2607000 0 0 0 0 0 0 0 0 0 36997 2504 38897 196085;196086;196087;196088 199401;199402;199403 199401 3 VNLGVGAYR FKLTADFREDPDPRKVNLGVGAYRTDDCHP DPDPRKVNLGVGAYRTDDCHPWVLPVVKKV K V N Y R T 1 1 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 947.51886 P17174 P17174 34 42 GOT1 Aspartate aminotransferase, cytoplasmic yes yes 2 0.00041521 131.04 By MS/MS By matching 2 1 1.1193 1.116 25.575 3 Median 0.97482 0.94345 23.754 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5015 1.3176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13254000 6190700 7063500 12557000 5898300 6659100 0 0 0 0 0 0 696800 292370 404430 0 0 0 0 0 0 36998 2038 38898 196089;196090;196091 199404;199405 199404 2 VNLKYDSWHK EFGPVVIDYGKVQSKVNLKYDSWHKEVLSK KVQSKVNLKYDSWHKEVLSKFGQMLGSNMT K V N H K E 0 0 1 1 0 0 0 0 1 0 1 2 0 0 0 1 0 1 1 1 0 0 10 1 1288.6564 Q14204 Q14204 1116 1125 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00068151 61.353 By MS/MS By MS/MS 2 1 1.0129 1.149 16.959 3 Plateau 0.8502 0.90646 14.161 2 1 Median NaN NaN NaN 0 0 Median 1.0129 1.149 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14640000 6870100 7769800 6234600 3124000 3110600 0 0 0 8405300 3746100 4659200 0 0 0 0 0 0 0 0 0 36999 2865 38899 196092;196093;196094 199406;199407 199407 2 VNLLQIVR ______________________________ ______________________________ M V N V R D 0 1 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 8 0 953.6022 O75438 O75438 2 9 NDUFB1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 yes yes 2 0.0060114 73.039 By MS/MS By matching By matching By matching 1 1 2 1 1.1497 1.0692 15.41 5 Median 1.1097 1.0845 NaN 1 0 Median 1.3219 1.0692 NaN 1 0 Median 1.0301 1.0389 26.476 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1497 0.8911 NaN 1 0 Median 5174500 2217300 2957300 2116500 947670 1168800 2347400 959800 1387600 651910 277880 374030 0 0 0 0 0 0 58699 31915 26785 37000 1672 38900 196095;196096;196097;196098;196099 199408 199408 1 VNLLSFTGSTQVGK CGGADIGTAMAKDERVNLLSFTGSTQVGKQ RVNLLSFTGSTQVGKQVGLMVQERFGRSLL R V N G K Q 0 0 1 0 0 1 0 2 0 0 2 1 0 1 0 2 2 0 0 2 0 0 14 0 1449.7827 P49419;A0A1B0GW77;A0A1B0GTG2;A0A1B0GW82;A0A1B0GUA1;A0A1B0GTY9;A0A1B0GTJ4;A0A1B0GV49;A0A0J9YWF7;A0A1B0GUY0 P49419 267 280 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase yes no 2 0.00034078 73.781 By MS/MS 2 0.90426 0.90694 25.671 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90426 0.90694 25.671 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9015700 4817100 4198600 0 0 0 0 0 0 9015700 4817100 4198600 0 0 0 0 0 0 0 0 0 37001 318 38901 196100;196101 199409;199410 199409 2 VNLLYSR AEISSKSPVAVQSTKVNLLYSRDHSVAESL PVAVQSTKVNLLYSRDHSVAESLNYVASWN K V N S R D 0 1 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 7 0 863.4865 Q13011;M0R248 Q13011 277 283 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes no 2 0.0024321 126.2 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2506 1.1303 13.817 4 Median 1.0452 0.97659 NaN 1 0 Median 1.3015 1.0823 NaN 1 0 Median 1.2017 1.1805 NaN 1 0 Median 1.6223 1.3533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67043000 30137000 36906000 42132000 19593000 22538000 15600000 6805800 8794200 2639900 1074500 1565400 6671300 2663000 4008300 0 0 0 0 0 0 37002 2778 38902 196102;196103;196104;196105 199411;199412;199413;199414;199415;199416;199417 199412 7 VNLNQIPLGR IQSTGIWGIGVATQKVNLNQIPLGRDMHSL VATQKVNLNQIPLGRDMHSLVMRNDGALYH K V N G R D 0 1 2 0 0 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1122.6509 Q5W111 Q5W111 86 95 SPRYD7 SPRY domain-containing protein 7 yes yes 2 0.0092181 86.833 By MS/MS By matching 1 1 1.016 0.91211 2.5178 2 Median 0.94843 0.89601 NaN 1 0 Median 1.0884 0.92849 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6817900 2519300 4298600 5973100 2233300 3739800 844810 286050 558760 0 0 0 0 0 0 0 0 0 0 0 0 37003 3119 38903 196106;196107 199418 199418 0 VNLQNNPGAMEHFHMK DAVREIRKYDDVTEKVNLQNNPGAMEHFHM NLQNNPGAMEHFHMKLFRAQRNLYIAGFSL K V N M K L 1 0 3 0 0 1 1 1 2 0 1 1 2 1 1 0 0 0 0 1 0 0 16 0 1865.8665 P51572;A0A2R8Y5M6;C9JSP1;C9JQ75;C9J0M4;C9JMD7;C9JM14 P51572 80 95 BCAP31 B-cell receptor-associated protein 31 yes no 2;3;4 3.3036E-10 99.705 By MS/MS By MS/MS By matching By matching By matching 6 6 1 2 1 1.0511 0.9446 22.771 16 Median 0.93931 0.90332 11.364 6 0 Median 1.3154 1.1689 24.203 6 0 Median 0.94118 0.8987 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1931 1.2218 16.748 2 0 Median 1.0429 0.86773 NaN 1 0 Median 396210000 191040000 205170000 321920000 158450000 163470000 67466000 29225000 38241000 3073400 1496000 1577300 0 0 0 3193300 1573600 1619700 554820 300720 254090 37004 2436 38904 196108;196109;196110;196111;196112;196113;196114;196115;196116;196117;196118;196119;196120;196121;196122;196123 199419;199420;199421;199422;199423;199424;199425;199426;199427;199428;199429;199430;199431 199430 13 VNLSAAQTLR PLYAVMYPVFNELERVNLSAAQTLRAAFIK NELERVNLSAAQTLRAAFIKAEKENPGLTQ R V N L R A 2 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 10 0 1071.6037 Q9BUL8;C9J5C3;H7C5M9;C9JSA3;C9JND6;C9J6F3;C9J932;F8WDF3 Q9BUL8 36 45 PDCD10 Programmed cell death protein 10 yes no 2 3.2578E-07 163.32 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 3 1.1032 0.93725 18.363 9 Median 1.1032 1.0493 NaN 1 0 Median 0.99372 0.82193 13.952 2 0 Median 1.0208 0.98038 NaN 1 0 Median 1.1277 0.93725 NaN 1 0 Median 1.3938 1.3972 NaN 1 1 Median 1.1514 0.92697 16.193 3 2 Median 115090000 54819000 60275000 48304000 22762000 25542000 13787000 6578800 7208500 23760000 11408000 12353000 7607000 3485100 4121900 7129400 2964700 4164600 14506000 7620700 6885300 37005 3841 38905 196124;196125;196126;196127;196128;196129;196130;196131;196132 199432;199433;199434;199435;199436;199437;199438;199439;199440;199441 199438 10 VNLTLGSIWDK EFEHQRAPRVSFSDKVNLTLGSIWDKIKNL FSDKVNLTLGSIWDKIKNLFSRQGSKDPAE K V N D K I 0 0 1 1 0 0 0 1 0 1 2 1 0 0 0 1 1 1 0 1 0 0 11 0 1244.6765 E9PKU7;E9PNH1 E9PKU7 78 88 GANAB yes no 2 0.00015616 82.261 By matching By MS/MS 1 1 0.88134 0.8421 76.408 2 Median 0.45549 0.49059 NaN 1 0 Median 1.7053 1.4455 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9249500 3936400 5313100 818300 590790 227510 8431100 3345600 5085600 0 0 0 0 0 0 0 0 0 0 0 0 37006 951 38906 196133;196134 199442 199442 1 VNMEDLR ENHCDFVKLREMLIRVNMEDLREQTHTRHY KLREMLIRVNMEDLREQTHTRHYELYRRCK R V N L R E 0 1 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 875.4171 D6RGI3;D6RER5;Q9NVA2;D6RDU5;H0Y961;B1AMS2;Q14141;A0A087X142;A6NMH6;A6NFQ9;F8W8I8;Q92599 D6RGI3 280 286 SEPT11;SEPT6;SEPT8 Septin-11;Septin-6;Septin-8 no no 2 0.0017105 110.61 By matching By matching By MS/MS By MS/MS 1 1 4 4 1.0751 1.0724 12.062 10 Median 0.91118 0.909 NaN 1 0 Median 1.4727 1.2722 NaN 1 0 Median 1.1051 1.0192 6.0509 4 0 Linear 1.3163 1.1347 13.828 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 101400000 46990000 54413000 3169800 1606100 1563700 1991600 895680 1095900 50209000 25245000 24964000 46033000 19243000 26790000 0 0 0 0 0 0 37007 822;573;118 38907;38908 196135;196136;196137;196138;196139;196140;196141;196142;196143;196144 199443;199444;199445;199446;199447;199448;199449;199450;199451;199452 199446 65 10 VNMPAKPAPPTK PTSKDQVLAMLEKAKVNMPAKPAPPTKATS KAKVNMPAKPAPPTKATSKPMGGSAPAKFQ K V N T K A 2 0 1 0 0 0 0 0 0 0 0 2 1 0 4 0 1 0 0 1 0 0 12 1 1249.6853 Q14008 Q14008 1078 1089 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 0.00029814 86.898 By matching By MS/MS 1 2 0.58486 0.55024 15.785 3 Median 0.69175 0.7166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58025 0.54541 1.2459 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7518600 4871700 2646900 940750 601260 339490 0 0 0 0 0 0 6577800 4270400 2307400 0 0 0 0 0 0 37008 2850 38909 196145;196146;196147 199453;199454;199455;199456;199457 199454 5 VNNADDFPNLFR MIKASEGGGGKGIRKVNNADDFPNLFRQVQ IRKVNNADDFPNLFRQVQAEVPGSPIFVMR K V N F R Q 1 1 3 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 12 0 1420.6735 Q13085 Q13085 324 335 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2 4.8954E-06 101.65 By MS/MS 1 0.77451 0.78339 NaN 1 Median 0.77451 0.78339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3046300 1787300 1259000 3046300 1787300 1259000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37009 2784 38910 196148 199458 199458 1 VNNASLIGLGYTQTLR AAKYMLDCRTSLSAKVNNASLIGLGYTQTL NNASLIGLGYTQTLRPGVKLTLSALIDGKN K V N L R P 1 1 2 0 0 1 0 2 0 1 3 0 0 0 0 1 2 0 1 1 0 0 16 0 1718.9315 Q9Y277 Q9Y277 237 252 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 0.00013202 52.344 By MS/MS By matching 2 1 0.92736 0.87797 0.74562 3 Plateau 0.92256 0.87766 0.053705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0488 0.86642 NaN 1 0 Median 6666700 3195000 3471700 6463900 3112400 3351500 0 0 0 0 0 0 0 0 0 0 0 0 202820 82631 120180 37010 4377 38911 196149;196150;196151 199459;199460 199459 2 VNNASLIGLGYTQTLRPGVK AAKYMLDCRTSLSAKVNNASLIGLGYTQTL LIGLGYTQTLRPGVKLTLSALIDGKNFSAG K V N V K L 1 1 2 0 0 1 0 3 0 1 3 1 0 0 1 1 2 0 1 2 0 0 20 1 2100.1691 Q9Y277 Q9Y277 237 256 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2;3 7.7215E-09 76.539 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 2 1.5491 1.429 22.495 8 Median 0.93771 0.97572 21.131 2 0 Median 1.5852 1.4702 NaN 1 0 Median 1.3441 1.3901 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5613 1.6552 1.3015 2 0 Median 1.5843 1.4206 4.7236 2 0 Median 684850000 300140000 384710000 633420000 277510000 355900000 5828100 2546900 3281300 4009300 1709500 2299800 0 0 0 36895000 16314000 20581000 4701500 2056300 2645200 37011 4377 38912 196152;196153;196154;196155;196156;196157;196158;196159 199461;199462;199463;199464;199465;199466;199467;199468;199469 199466 9 VNNFGSGLTALGLKPK LGNYKWMNYLEVNRRVNNFGSGLTALGLKP NNFGSGLTALGLKPKNTIAIFCETRAEWMI R V N P K N 1 0 2 0 0 0 0 3 0 0 3 2 0 1 1 1 1 0 0 1 0 0 16 1 1614.9093 O60488;D6RF95 O60488 135 150 ACSL4 Long-chain-fatty-acid--CoA ligase 4 yes no 3 0.065795 10.281 By MS/MS By matching By matching 1 1 1 1.5032 1.4426 36.687 3 Median 0.75339 0.77963 NaN 1 0 Median 1.5032 1.4426 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5345 1.499 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2091600 1114800 976860 1789300 1002200 787140 122180 48623 73557 0 0 0 180120 63961 116160 0 0 0 0 0 0 37012 1615 38913 196160;196161;196162 199470 199470 1 VNNSSLIGLGYTQTLKPGIK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL LIGLGYTQTLKPGIKLTLSALLDGKNVNAG K V N I K L 0 0 2 0 0 1 0 3 0 2 3 2 0 0 1 2 2 0 1 1 0 0 20 1 2102.1736 P21796 P21796 237 256 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2;3 3.1043E-13 106.52 By MS/MS By matching By MS/MS By matching By MS/MS By matching 5 3 3 2 2 3 1.3102 1.1664 14.11 18 Median 1.1186 1.1188 16.514 5 0 Median 1.5474 1.3942 14.879 3 0 Plateau 1.3082 1.2721 4.0555 3 0 Plateau 1.3867 1.2176 4.5863 2 0 Median 1.4101 1.2269 19.164 2 0 Median 1.3423 1.1541 8.1005 3 0 Median 257220000 113960000 143260000 195920000 87808000 108110000 4305200 1823600 2481600 28691000 12042000 16649000 9404300 4072000 5332300 13122000 5801100 7321000 5775700 2409100 3366600 37013 2092 38914 196163;196164;196165;196166;196167;196168;196169;196170;196171;196172;196173;196174;196175;196176;196177;196178;196179;196180 199471;199472;199473;199474;199475;199476;199477;199478;199479 199472 8 VNNSSLIGVGYTQTLR AAKYQLDPTASISAKVNNSSLIGVGYTQTL NNSSLIGVGYTQTLRPGVKLTLSALVDGKS K V N L R P 0 1 2 0 0 1 0 2 0 1 2 0 0 0 0 2 2 0 1 2 0 0 16 0 1720.9108 A0A0A0MR02;P45880 A0A0A0MR02 248 263 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.00013156 51.774 By MS/MS By matching By matching 1 1 1 1.2608 1.0622 14.993 3 Median 0.96814 0.91324 NaN 1 0 Median 1.4283 1.2326 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2608 1.0622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5908000 2936800 2971200 5442900 2759900 2683000 326180 116740 209430 0 0 0 138900 60136 78764 0 0 0 0 0 0 37014 151 38915 196181;196182;196183 199480 199480 1 VNNSSLIGVGYTQTLRPGVK AAKYQLDPTASISAKVNNSSLIGVGYTQTL LIGVGYTQTLRPGVKLTLSALVDGKSINAG K V N V K L 0 1 2 0 0 1 0 3 0 1 2 1 0 0 1 2 2 0 1 3 0 0 20 1 2102.1484 A0A0A0MR02;P45880 A0A0A0MR02 248 267 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2;3 2.3068E-58 220.85 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 11 7 5 4 6 5 1.1157 1.0169 38.512 38 Median 0.87553 0.8971 14.031 11 0 Median 1.2207 1.0994 15.51 7 0 Median 0.9347 1.0181 90.457 5 0 Median 0.99439 0.90923 41.793 4 0 Median 1.2367 1.3487 9.6858 6 0 Median 1.178 0.99065 8.6005 5 0 Median 1069700000 530410000 539250000 870330000 435960000 434370000 77561000 34357000 43204000 47546000 28185000 19361000 9107000 4146900 4960100 47582000 19629000 27953000 17532000 8136400 9396000 37015 151 38916 196184;196185;196186;196187;196188;196189;196190;196191;196192;196193;196194;196195;196196;196197;196198;196199;196200;196201;196202;196203;196204;196205;196206;196207;196208;196209;196210;196211;196212;196213;196214;196215;196216;196217;196218;196219;196220;196221 199481;199482;199483;199484;199485;199486;199487;199488;199489;199490;199491;199492;199493;199494;199495;199496;199497;199498;199499;199500 199488 20 VNNSTMLGASGDYADFQYLK YGSLARFRNISRIMRVNNSTMLGASGDYAD MLGASGDYADFQYLKQVLGQMVIDEELLGD R V N L K Q 2 0 2 2 0 1 0 2 0 0 2 1 1 1 0 2 1 0 2 1 0 0 20 0 2193.0048 P28070 P28070 90 109 PSMB4 Proteasome subunit beta type-4 yes yes 2 4.72E-08 70.332 By MS/MS By matching By matching By matching 2 1 2 2 1.0916 0.93917 7.2131 7 Median 1.0388 0.96367 9.3415 2 0 Median 1.0916 0.93917 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1247 0.91377 2.1554 2 0 Median 0.98943 1.0161 10.097 2 0 Median NaN NaN NaN 0 0 Median 56208000 25662000 30546000 53477000 24330000 29146000 297210 135970 161230 0 0 0 453950 216850 237100 1980200 979260 1000900 0 0 0 37016 2160 38917;38918 196222;196223;196224;196225;196226;196227;196228 199501;199502;199503;199504 199502 916 4 VNNVVWDLDRPLEEDCTLELLK CGISQGLADNTVIAKVNNVVWDLDRPLEED LDRPLEEDCTLELLKFEDEEAQAVYWHSSA K V N L K F 0 1 2 3 1 0 3 0 0 0 5 1 0 0 1 0 1 1 0 3 0 0 22 1 2669.3371 P26639 P26639 122 143 TARS Threonine--tRNA ligase, cytoplasmic yes yes 3 0.009904 21.006 By MS/MS 1 1.701 1.6862 NaN 1 Median NaN NaN NaN 0 0 Median 1.701 1.6862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12439000 5960700 6478100 0 0 0 12439000 5960700 6478100 0 0 0 0 0 0 0 0 0 0 0 0 37017 2147 38919 196229 199505;199506 199505 2 VNNVYDVDNK RAVLAELNASLLGMRVNNVYDVDNKTYLIR LLGMRVNNVYDVDNKTYLIRLQKPDFKATL R V N N K T 0 0 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 10 0 1178.5568 G3V4D9;G3V5V3;O60524;G3V547 G3V4D9 26 35 NEMF Nuclear export mediator factor NEMF yes no 2 0.0059578 49.715 By MS/MS By matching By matching By matching By matching 1 2 1 5 4 0.96788 0.8826 16.755 13 Median NaN NaN NaN 0 0 Median 1.0066 0.8826 NaN 1 0 Median 0.99204 1.0465 25.93 2 0 Median 1.5586 1.2919 NaN 1 0 Median 0.77202 0.85667 11.361 5 0 Median 1.1493 0.94228 8.9126 4 0 Median 53730000 26684000 27046000 0 0 0 2337300 1115300 1222000 3259200 1572000 1687200 379420 149900 229520 23714000 12395000 11318000 24040000 11452000 12589000 37018 1115 38920 196230;196231;196232;196233;196234;196235;196236;196237;196238;196239;196240;196241;196242 199507 199507 1 VNPALAELNLR GLTEARCKDISSALRVNPALAELNLRSNEL SALRVNPALAELNLRSNELGDVGVHCVLQG R V N L R S 2 1 2 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1208.6877 P13489;E9PMJ3;E9PLZ3;E9PIM9;E9PMA9;E9PMN0;E9PIK5 P13489 54 64 RNH1 Ribonuclease inhibitor yes no 2 0.00016463 113.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 2 1 0.94414 0.90392 70.672 11 Median 0.88227 0.85855 109.14 4 2 Median 0.89505 0.76451 23.689 2 0 Median 0.9816 1.0114 0.92838 2 0 Median 0.88062 0.75864 10.066 2 0 Median 1.7273 1.8519 NaN 1 0 Median NaN NaN NaN 0 0 Median 206640000 108710000 97935000 118010000 65156000 52852000 48979000 24272000 24707000 29596000 14689000 14907000 8342200 4097100 4245100 1719800 496840 1222900 0 0 0 37019 1991 38921 196243;196244;196245;196246;196247;196248;196249;196250;196251;196252;196253 199508;199509;199510;199511;199512;199513;199514;199515;199516;199517;199518;199519;199520;199521;199522 199509 15 VNPCIGGVILFHETLYQK NRRFYRQLLLTADDRVNPCIGGVILFHETL CIGGVILFHETLYQKADDGRPFPQVIKSKG R V N Q K A 0 0 1 0 1 1 1 2 1 2 2 1 0 1 1 0 1 0 1 2 0 0 18 0 2087.0874 J3KPS3;P04075;H3BQN4;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 J3KPS3 70 87 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 3 0.02956 14.041 By MS/MS 1 1.0757 0.92758 NaN 1 Median NaN NaN NaN 0 0 Median 1.0757 0.92758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2411600 1105700 1305800 0 0 0 2411600 1105700 1305800 0 0 0 0 0 0 0 0 0 0 0 0 37020 1310 38922 196254 199523 199523 1 VNPDLQVEVKPSIR MHLKGRRHRLQYKKKVNPDLQVEVKPSIRA KVNPDLQVEVKPSIRARKIQEEKMRKQMQK K V N I R A 0 1 1 1 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 3 0 0 14 1 1592.8886 Q96KR1 Q96KR1 614 627 ZFR Zinc finger RNA-binding protein yes yes 2;3 5.9529E-05 88.441 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 1 0.754 0.76996 63.525 10 Median NaN NaN NaN 0 0 Median 0.75423 0.71577 NaN 1 0 Median 0.6754 0.76629 12.774 3 0 Median 1.0433 1.0019 22.141 2 0 Median 0.6679 0.73465 115.15 3 0 Median 0.88321 0.77365 NaN 1 0 Median 81365000 45002000 36363000 0 0 0 1858300 1137700 720600 55435000 29587000 25848000 5705400 2910700 2794700 17482000 10837000 6644600 884770 529350 355420 37021 3697 38923 196255;196256;196257;196258;196259;196260;196261;196262;196263;196264 199524;199525;199526;199527;199528;199529;199530;199531 199527 8 VNPDTGYINYDQLEENAR KISATSIFFESMPYKVNPDTGYINYDQLEE DTGYINYDQLEENARLFHPKLIIAGTSCYS K V N A R L 1 1 3 2 0 1 2 1 0 1 1 0 0 0 1 0 1 0 2 1 0 0 18 0 2109.9603 P34896 P34896 174 191 SHMT1 Serine hydroxymethyltransferase, cytosolic yes yes 2 5.0883E-14 115.78 By matching By matching By MS/MS By matching 1 1 1 2 0.86981 0.76106 14.425 5 Median 0.71887 0.70976 NaN 1 0 Median 0.97506 0.86979 NaN 1 0 Median 0.69143 0.68785 NaN 1 0 Median 0.98111 0.85906 17.13 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9119400 5133300 3986100 1170700 672120 498620 221940 106490 115440 7140900 4073500 3067400 585820 281200 304630 0 0 0 0 0 0 37022 2227 38924 196265;196266;196267;196268;196269 199532 199532 1 VNPFRPGDSEPPPAPGAQR APQKKFGPVVAPKPKVNPFRPGDSEPPPAP RPGDSEPPPAPGAQRAQMGRVGEIPPPPPE K V N Q R A 2 2 1 1 0 1 1 2 0 0 0 0 0 1 6 1 0 0 0 1 0 0 19 1 1987.9864 Q15942;H0Y2Y8;C9IZ41 Q15942 36 54 ZYX Zyxin yes no 3 0.012531 30.416 By matching By MS/MS By MS/MS 1 1 1 0.41784 0.42841 47.388 3 Median 0.41784 0.42841 NaN 1 0 Median 0.28613 0.25986 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71917 0.6701 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14160000 9683100 4476500 8515900 5905600 2610300 4294400 3169700 1124700 0 0 0 1349300 607770 741530 0 0 0 0 0 0 37023 2978 38925 196270;196271;196272 199533;199534 199534 2 VNPIQGLASK KEWVAKQTKRMLDMKVNPIQGLASKWDYEK MLDMKVNPIQGLASKWDYEKNEWKK_____ K V N S K W 1 0 1 0 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1025.5869 P13073 P13073 150 159 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 2 0.00033774 95.311 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0804 0.86948 14.715 5 Median 0.74321 0.69593 NaN 1 0 Median 1.1517 0.96209 0.94103 2 0 Median 0.78287 0.74915 NaN 1 0 Median 1.0804 0.86948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 362010000 174090000 187930000 107710000 59522000 48191000 234920000 106600000 128320000 12036000 4362800 7673400 7346200 3601900 3744300 0 0 0 0 0 0 37024 1988 38926 196273;196274;196275;196276;196277 199535;199536;199537;199538;199539;199540;199541;199542;199543;199544;199545;199546;199547;199548;199549;199550 199546 16 VNPNTALTLLEK TYLADYGQPASKYLRVNPNTALTLLEKMKD YLRVNPNTALTLLEKMKDTSKKNNIFAQFR R V N E K M 1 0 2 0 0 0 1 0 0 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1311.7398 E7EW84;Q8TAG9 E7EW84 647 658 EXOC6 Exocyst complex component 6 yes no 2 0.025426 48.44 By MS/MS 1 0.69619 0.68262 NaN 1 Median 0.69619 0.68262 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2355900 1288000 1067800 2355900 1288000 1067800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37025 900 38927 196278 199551 199551 1 VNPQDGTNTLTR SSHANAAKHTQDSARVNPQDGTNTLTRIAE SARVNPQDGTNTLTRIAENGVSERDSEAAK R V N T R I 0 1 2 1 0 1 0 1 0 0 1 0 0 0 1 0 3 0 0 1 0 0 12 0 1314.6528 Q9H9B1;A0A1B0GV09;A0A1B0GU48;A0A1B0GUD1;A0A1B0GVZ8;A0A0D9SFX4;A0A0D9SEQ1;A0A1B0GW79;A0A0D9SFG7;A0A0D9SER3;A0A0D9SFS4;A0A0D9SEP2 Q9H9B1 79 90 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes no 2 0.0014698 52.579 By MS/MS By MS/MS By matching 1 1 1 0.95832 1.0053 57.614 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62962 0.68637 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95832 1.0053 NaN 1 0 Median 2.3449 2.1299 NaN 1 0 Median 6332100 2333300 3998800 0 0 0 0 0 0 1830100 909080 921000 0 0 0 2335300 1019700 1315700 2166700 404580 1762100 37026 3997 38928 196279;196280;196281 199552;199553;199554;199555 199555 4 VNPQISDEKDEDEKEEK DLAAKRRPEEKEPEKVNPQISDEKDEDEKE PQISDEKDEDEKEEKRRKTTPKEPTEKKMA K V N E K R 0 0 1 3 0 1 5 0 0 1 0 3 0 0 1 1 0 0 0 1 0 0 17 2 2030.928 P26358 P26358 307 323 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 4 0.062985 9.5802 By matching By MS/MS 2 4 0.76839 0.84732 10.735 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71895 0.8483 7.9825 2 0 Median 0.82359 0.847 12.91 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4822900 2605000 2218000 0 0 0 0 0 0 2426400 1403200 1023200 2396600 1201800 1194700 0 0 0 0 0 0 37027 2142 38929 196282;196283;196284;196285;196286;196287 199556 199556 1 VNPTVFFDIAVDGEPLGR ______________________________ TVFFDIAVDGEPLGRVSFELFADKVPKTAE M V N G R V 1 1 1 2 0 0 1 2 0 1 1 0 0 2 2 0 1 0 0 3 0 0 18 0 1944.9945 P62937;F8WE65;C9J5S7;E5RIZ5 P62937 2 19 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 1.1932E-05 51.774 By MS/MS 1 0.6954 0.70562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6954 0.70562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1005000 562460 442530 0 0 0 0 0 0 1005000 562460 442530 0 0 0 0 0 0 0 0 0 37028 2611 38930 196288 199557;199558 199557 2 VNQAIWLLCTGAR GTVRRQAVDVSPLRRVNQAIWLLCTGAREA RRVNQAIWLLCTGAREAAFRNIKTIAECLA R V N A R E 2 1 1 0 1 1 0 1 0 1 2 0 0 0 0 0 1 1 0 1 0 0 13 0 1500.7871 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 147 159 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 3.0566E-07 117.52 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.1966 1.0032 25.637 7 Median 1.2463 1.1836 5.7577 2 2 Median 1.1862 1.0032 10.331 3 0 Plateau NaN NaN NaN 0 0 Median 1.1969 0.98132 NaN 1 0 Median 1.8283 1.8163 NaN 1 1 Median NaN NaN NaN 0 0 Median 54590000 23096000 31495000 38170000 16164000 22007000 11668000 5215700 6452600 0 0 0 374700 124560 250140 4377100 1591800 2785300 0 0 0 37029 1425 38931 196289;196290;196291;196292;196293;196294;196295 199559;199560;199561;199562;199563;199564 199559 6 VNQIGSVTESLQACK AKAVNEKSCNCLLLKVNQIGSVTESLQACK VNQIGSVTESLQACKLAQANGWGVMVSHRS K V N C K L 1 0 1 0 1 2 1 1 0 1 1 1 0 0 0 2 1 0 0 2 0 0 15 0 1632.8141 P06733;A0A2R8Y6G6 P06733 344 358 ENO1 Alpha-enolase yes no 2 2.7542E-09 143.97 By MS/MS By MS/MS 2 7 1.1741 1.0036 12.627 9 Median 1.1813 1.0809 6.3223 2 0 Median 1.1741 1.0023 13.671 7 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 190620000 87407000 103220000 73106000 32754000 40352000 117520000 54652000 62865000 0 0 0 0 0 0 0 0 0 0 0 0 37030 1873 38932 196296;196297;196298;196299;196300;196301;196302;196303;196304 199565;199566;199567;199568;199569;199570;199571;199572;199573;199574;199575;199576;199577 199569 13 VNQPASFAIR ARRLTVMSLQESGLKVNQPASFAIRLNGAK ESGLKVNQPASFAIRLNGAKGKIDAKVHSP K V N I R L 2 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1101.5931 O75369;E7EN95 O75369 2302 2311 FLNB Filamin-B yes no 2 2.0661E-05 146.81 By MS/MS By MS/MS 2 1 1.086 1.0577 22.22 3 Median 1.2158 1.1623 13.335 2 0 Median 1.0275 0.82028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99928000 46334000 53594000 42764000 18727000 24037000 57164000 27607000 29557000 0 0 0 0 0 0 0 0 0 0 0 0 37031 1664 38933 196305;196306;196307 199578;199579;199580;199581;199582 199579 5 VNQPASFAVQLNGAR ARRLTVTSLQETGLKVNQPASFAVQLNGAR VNQPASFAVQLNGARGVIDARVHTPSGAVE K V N A R G 3 1 2 0 0 2 0 1 0 0 1 0 0 1 1 1 0 0 0 2 0 0 15 0 1570.8216 Q14315 Q14315 2423 2437 FLNC Filamin-C yes yes 2 4.5507E-14 127.42 By MS/MS By MS/MS By matching 1 1 1 1.0958 0.8337 21.132 3 Plateau 1.215 1.1838 NaN 1 1 Median 0.98837 0.80978 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95968 0.8337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25767000 12233000 13535000 16616000 7598000 9018200 8625400 4355500 4269900 0 0 0 525840 279210 246630 0 0 0 0 0 0 37032 2871 38934 196308;196309;196310 199583;199584;199585 199583 3 VNQPASFAVSLNGAK ARRLTVSSLQESGLKVNQPASFAVSLNGAK VNQPASFAVSLNGAKGAIDAKVHSPSGALE K V N A K G 3 0 2 0 0 1 0 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1501.7889 P21333;Q60FE5;A0A087WWY3 P21333 2347 2361 FLNA Filamin-A no no 2 3.2474E-11 165.18 By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 2 0.94605 0.92673 27.053 10 Median 1.0441 1.0254 0.060256 2 0 Median 0.83661 0.74533 26.054 4 1 Median 1.1443 1.2592 5.5663 2 0 Median 0.74147 0.71233 22.96 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 121050000 61279000 59775000 56050000 26714000 29336000 51257000 27148000 24109000 11663000 6269500 5394000 2083900 1147900 936010 0 0 0 0 0 0 37033 2088;3120 38935 196311;196312;196313;196314;196315;196316;196317;196318;196319;196320;196321 199586;199587;199588;199589;199590;199591;199592;199593;199594;199595;199596;199597;199598 199586 12 VNSASSSNPPAEVDPDTILK SDSPSMKKESELPRRVNSASSSNPPAEVDP SSNPPAEVDPDTILKALFKSSGASVTTQPT R V N L K A 2 0 2 2 0 0 1 0 0 1 1 1 0 0 3 4 1 0 0 2 0 0 20 0 2040.0011 F6VRR5;Q9BY77 F6VRR5 398 417 POLDIP3 Polymerase delta-interacting protein 3 yes no 2 4.8868E-06 49.929 By MS/MS 1 0.52706 0.51552 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52706 0.51552 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6744200 4334500 2409700 0 0 0 0 0 0 6744200 4334500 2409700 0 0 0 0 0 0 0 0 0 37034 1051 38936 196322 199599;199600 199599 2 VNSININQGSITFAGGPGR HVIETLTKTALSANRVNSININQGSITFAG NINQGSITFAGGPGRDGTIDFTPGSELLIT R V N G R D 1 1 3 0 0 1 0 4 0 3 0 0 0 1 1 2 1 0 0 1 0 0 19 0 1900.9755 F5H6E2;O00159 F5H6E2 989 1007 MYO1C Unconventional myosin-Ic yes no 2 6.0839E-13 101.6 By MS/MS By matching 1 1 0.78308 0.72467 12.926 2 Median 0.815 0.79403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75241 0.66137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3301600 1895200 1406400 3070500 1773500 1297100 0 0 0 0 0 0 231060 121700 109350 0 0 0 0 0 0 37035 1042 38937 196323;196324 199601;199602 199602 2 VNSLAPGPISGTEGLRR MTRHLAVEWGPQNIRVNSLAPGPISGTEGL SLAPGPISGTEGLRRL______________ R V N R R L 1 2 1 0 0 0 1 3 0 1 2 0 0 0 2 2 1 0 0 1 0 0 17 1 1722.9377 A0A0J9YWI0;Q4VXZ8;Q9NUI1 A0A0J9YWI0 221 237 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes no 3 0.012373 20.939 By MS/MS By MS/MS 1 1 0.78576 0.78758 3.4599 2 Median 0.74968 0.80708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82357 0.76854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8661900 4801900 3860000 7193700 4107700 3086000 0 0 0 0 0 0 1468200 694190 774020 0 0 0 0 0 0 37036 289 38938 196325;196326 199603;199604 199604 1 VNSLGETAER KHEGFERDLAALGDKVNSLGETAERLIQSH ALGDKVNSLGETAERLIQSHPESAEDLQEK K V N E R L 1 1 1 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1074.5306 A0A0D9SF54;Q13813 Q13813 1289 1298 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 0.00040727 76.827 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1 0.87954 0.88391 17.077 7 Median NaN NaN NaN 0 0 Median 0.88463 0.75235 31.169 2 1 Median 0.86917 0.96481 NaN 1 1 Median 0.94414 0.82562 9.649 2 0 Median 0.87954 0.92286 NaN 1 0 Median 0.87269 0.73102 NaN 1 0 Median 11624000 6110200 5513300 0 0 0 3940000 2153800 1786200 2034200 1011500 1022700 2305100 1108400 1196700 2376200 1338700 1037500 968050 497740 470310 37037 264;2838 38939 196327;196328;196329;196330;196331;196332;196333 199605;199606;199607;199608;199609;199610;199611;199612;199613;199614 199607 10 VNSMVAYK SEEVRLRSFTTTIHKVNSMVAYKIPVND__ FTTTIHKVNSMVAYKIPVND__________ K V N Y K I 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 2 0 0 8 0 910.45824 Q13257 Q13257 193 200 MAD2L1 Mitotic spindle assembly checkpoint protein MAD2A yes yes 2 0.011256 57.281 By MS/MS By matching 1 1 1.0173 0.96663 22.054 2 Median 1.1967 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86487 0.82706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4159000 2082400 2076600 2775400 1225500 1549800 0 0 0 1383600 856850 526790 0 0 0 0 0 0 0 0 0 37038 2801 38940 196334;196335 199615 199615 1 VNSTANAETQATSAFQTQKPLK LSPVRSPKKKGSTTRVNSTANAETQATSAF ETQATSAFQTQKPLKSTSLSLFYKKVYRLA R V N L K S 4 0 2 0 0 3 1 0 0 0 1 2 0 1 1 2 4 0 0 1 0 0 22 1 2334.1816 A0A3B3IS71;P06400 A0A3B3IS71 622 643 RB1 Retinoblastoma-associated protein yes no 3 5.6331E-18 98.816 By MS/MS By MS/MS 1 1 0.85169 0.8879 5.1104 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7506 0.85639 NaN 1 0 Median 0.96641 0.92058 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21645000 11696000 9949000 0 0 0 0 0 0 15678000 8762800 6915300 5967300 2933600 3033700 0 0 0 0 0 0 37039 421 38941 196336;196337 199616;199617;199618;199619 199616 4 VNTDGLVLR EYDENTSIIFRPNSKVNTDGLVLRGWYNCL FRPNSKVNTDGLVLRGWYNCLTLAIYGSVD K V N L R G 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 2 0 0 9 0 985.55564 Q69YN4 Q69YN4 106 114 KIAA1429 Protein virilizer homolog yes yes 2 0.001584 79.906 By MS/MS 1 0.82563 0.90609 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82563 0.90609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6771700 3335500 3436200 0 0 0 0 0 0 6771700 3335500 3436200 0 0 0 0 0 0 0 0 0 37040 3130 38942 196338 199620 199620 1 VNTDLGNDLYFVK EEPIPETRIEVEIPKVNTDLGNDLYFVKLP PKVNTDLGNDLYFVKLPNFLSVEPRPFDPQ K V N V K L 0 0 2 2 0 0 0 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 13 0 1496.7511 Q8WVC0 Q8WVC0 365 377 LEO1 RNA polymerase-associated protein LEO1 yes yes 2 0.00045482 73.067 By matching By MS/MS 2 2 1.0673 1.0296 51.794 4 Median NaN NaN NaN 0 0 Median 1.2111 1.0296 0.68801 2 0 Median 0.6092 0.61703 73.659 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20148000 10952000 9195700 0 0 0 1494900 659160 835700 18653000 10293000 8360000 0 0 0 0 0 0 0 0 0 37041 3500 38943 196339;196340;196341;196342 199621;199622 199621 2 VNTELMK YGDDEDSLSSAYIQRVNTELMKAAARGLTL LSSAYIQRVNTELMKAAARGLTLLFASGDS R V N M K A 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 7 0 833.43169 A0A2R8YGD1;O14773;A0A2R8Y7U1;A0A2R8Y7I4;A0A2R8YD72 A0A2R8YGD1 247 253 TPP1 Tripeptidyl-peptidase 1 yes no 2 0.047302 41.502 By matching By MS/MS By matching 1 1 1 1.0473 1.0955 22.847 3 Median 0.85564 0.84042 NaN 1 0 Median 1.5379 1.3245 NaN 1 0 Median 1.0473 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3614600 1750000 1864600 1212000 777080 434890 1764300 653250 1111100 638360 319680 318690 0 0 0 0 0 0 0 0 0 37042 402 38944 196343;196344;196345 199623;199624 199623 2 VNTHGIFTISTASMVEK AQKDGEKSRVKVKVRVNTHGIFTISTASMV THGIFTISTASMVEKVPTEENEMSSEADME R V N E K V 1 0 1 0 0 0 1 1 1 2 0 1 1 1 0 2 3 0 0 2 0 0 17 0 1833.9295 Q92598;A0A0A0MSM0 Q92598 484 500 HSPH1 Heat shock protein 105 kDa yes no 3 0.0049135 25.508 By MS/MS By matching 1 1 1.0214 0.93381 65.163 2 Median 1.5183 1.4804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68714 0.58904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5521800 2443700 3078100 5225500 2259300 2966200 0 0 0 0 0 0 296310 184460 111850 0 0 0 0 0 0 37043 3541 38945 196346;196347 199625 199625 1 VNTLIRPDGEK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV DVAKVNTLIRPDGEKKAYVRLAPDYDALDV K V N E K K 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1240.6776 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 136 RPL23A 60S ribosomal protein L23a yes no 2;3 0.00015376 147.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 2 3 3 2 0.84793 0.84131 22.643 16 Median 0.80071 0.83591 6.4452 2 1 Median 0.88357 0.79862 34.828 4 3 Median 0.8205 0.86125 11.58 2 0 Median 0.91393 0.80902 15.063 3 0 Median 0.82187 0.90544 30.435 3 0 Median 0.85414 0.75834 22.649 2 1 Median 113240000 61767000 51472000 31858000 18204000 13654000 18295000 10796000 7499400 35261000 17965000 17296000 10409000 4637600 5771600 12345000 7322300 5022700 5070800 2842400 2228400 37044 544 38946 196348;196349;196350;196351;196352;196353;196354;196355;196356;196357;196358;196359;196360;196361;196362;196363;196364 199626;199627;199628;199629;199630;199631;199632;199633;199634;199635;199636;199637;199638;199639;199640;199641;199642;199643;199644;199645;199646 199639 21 VNTLIRPDGEKK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV VAKVNTLIRPDGEKKAYVRLAPDYDALDVA K V N K K A 0 1 1 1 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 1 0 0 12 2 1368.7725 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 126 137 RPL23A 60S ribosomal protein L23a yes no 2;3 0.00019559 71.555 By MS/MS By MS/MS By matching By MS/MS By matching By matching 2 4 1 2 3 2 1.0025 0.99016 9.4694 14 Median 0.99599 1.0537 8.0513 2 0 Median 1.0025 0.94425 12.665 4 0 Median 0.87338 0.97786 NaN 1 0 Median 1.0447 0.86172 1.4963 2 0 Median 0.8799 1.0137 2.555 3 0 Median 1.072 0.93733 9.0476 2 0 Median 45710000 23288000 22422000 13040000 6662100 6377700 11863000 5837100 6025500 9873200 5179300 4693900 2583200 1190800 1392300 7626900 4071100 3555800 724490 347380 377110 37045 544 38947 196365;196366;196367;196368;196369;196370;196371;196372;196373;196374;196375;196376;196377;196378 199647;199648;199649;199650;199651;199652;199653;199654;199655;199656;199657 199653 11 VNTLVAAANSLDNLCR TRLHNLAQFEGGESKVNTLVAAANSLDNLC NTLVAAANSLDNLCRMDPAWHPWL______ K V N C R M 3 1 3 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 2 0 0 16 0 1729.8781 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3824 3839 TRRAP Transformation/transcription domain-associated protein yes no 2 2.9511E-06 86.313 By MS/MS By matching 1 1 0.87625 0.8555 2.7272 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76326 0.83916 NaN 1 0 Median 1.006 0.87216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3011500 1565100 1446400 0 0 0 0 0 0 2901200 1515200 1386000 110240 49875 60368 0 0 0 0 0 0 37046 991 38948 196379;196380 199658 199658 1 VNTPTTTVYR MFKYNKFKCRILNEKVNTPTTTVYRCGPLI ILNEKVNTPTTTVYRCGPLIDLCRGPHVRH K V N Y R C 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 4 0 1 2 0 0 10 0 1150.5982 P26639 P26639 244 253 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00048497 107.57 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 0.84197 0.76766 9.4155 4 Median 0.90174 0.8532 NaN 1 0 Median 0.78617 0.67984 NaN 1 0 Median 0.67126 0.75306 NaN 1 0 Median 0.90793 0.78254 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55389000 29231000 26158000 11281000 6041100 5239600 20662000 11360000 9302300 11605000 5496100 6108500 11842000 6334200 5507700 0 0 0 0 0 0 37047 2147 38949 196381;196382;196383;196384 199659;199660;199661;199662;199663;199664;199665 199660 7 VNTSEGVVLLSYSGQK IDDRPADAGSGAGLRVNTSEGVVLLSYSGQ NTSEGVVLLSYSGQKTEGPQRISAKISQIP R V N Q K T 0 0 1 0 0 1 1 2 0 0 2 1 0 0 0 3 1 0 1 3 0 0 16 0 1679.873 Q96T58 Q96T58 2808 2823 SPEN Msx2-interacting protein yes yes 2 1.3741E-06 90.731 By MS/MS By matching By MS/MS 1 2 1 1.0616 1.0482 11.414 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86954 0.93117 NaN 1 0 Median 1.2651 1.1541 6.3742 2 0 Median 0.94606 0.9959 NaN 1 1 Median NaN NaN NaN 0 0 Median 12070000 6096500 5973100 0 0 0 0 0 0 8381400 4282100 4099300 443260 196360 246900 3245000 1618100 1627000 0 0 0 37048 3741 38950 196385;196386;196387;196388 199666;199667;199668 199666 3 VNVAEVLVNQGAHVDAQTK KSGLTPLHLAAQEDRVNVAEVLVNQGAHVD EVLVNQGAHVDAQTKMGYTPLHVGCHYGNI R V N T K M 3 0 2 1 0 2 1 1 1 0 1 1 0 0 0 0 1 0 0 5 0 0 19 0 1991.0436 Q12955 Q12955 710 728 ANK3 Ankyrin-3 yes yes 3 2.3202E-05 45.257 By matching By MS/MS By matching 1 1 1 1.0985 0.98727 23.405 3 Median NaN NaN NaN 0 0 Median 1.346 1.1645 NaN 1 0 Median 0.65829 0.73372 NaN 1 0 Median 1.0985 0.98727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4161700 2752000 1409700 0 0 0 578070 235510 342560 3335000 2387300 947700 248580 129170 119410 0 0 0 0 0 0 37049 2773 38951 196389;196390;196391 199669 199669 1 VNVDIINFGEEEVNTEK EKDLVKLAKRLKKEKVNVDIINFGEEEVNT VDIINFGEEEVNTEKLTAFVNTLNGKDGTG K V N E K L 0 0 3 1 0 0 4 1 0 2 0 1 0 1 0 0 1 0 0 3 0 0 17 0 1947.9426 P55036;Q5VWC4;A6PVX3;A2A3N6 P55036 136 152 PSMD4;PIPSL 26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein yes no 2 0.025877 35.645 By MS/MS 1 0.69642 0.68882 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69642 0.68882 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3598500 2159100 1439400 0 0 0 0 0 0 3598500 2159100 1439400 0 0 0 0 0 0 0 0 0 37050 2491 38952 196392 199670 199670 1 VNVDKVLER QQTQNQVDEVVDIMRVNVDKVLERDQKLSE VVDIMRVNVDKVLERDQKLSELDDRADALQ R V N E R D 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 3 0 0 9 1 1070.6084 J3QRU4;F8WCA0;L7N2F9;P63027;K7ENK9;K7EKX0;F5GZV7;P23763;Q15836 Q15836 31 39 VAMP2;VAMP3;VAMP1 Vesicle-associated membrane protein 2;Vesicle-associated membrane protein 1;Vesicle-associated membrane protein 3 no no 2 0.00083319 143.03 By MS/MS By MS/MS 2 1 1.1636 1.0556 10.783 3 Plateau 1.1441 1.1277 9.3411 2 1 Median 1.102 0.97294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21738000 10108000 11630000 12193000 5711400 6481900 9545200 4396800 5148400 0 0 0 0 0 0 0 0 0 0 0 0 37051 2974;1095 38953 196393;196394;196395 199671;199672;199673;199674;199675 199674 5 VNVDPEDLIPK RCLDLYLCPRQRKMRVNVDPEDLIPKLPRP RKMRVNVDPEDLIPKLPRPRDLQPFPTCQA R V N P K L 0 0 1 2 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1237.6554 Q14137 Q14137 381 391 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.060675 25.559 By MS/MS By matching 2 2 0.72977 0.72716 52.851 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72977 0.72716 25.943 2 0 Median 1.0957 0.93462 84.124 2 0 Median 6552800 3600300 2952600 0 0 0 0 0 0 0 0 0 0 0 0 5940400 3213300 2727100 612420 386990 225430 37052 2856 38954 196396;196397;196398;196399 199676 199676 1 VNVEAPDVNLEGLGGK HMTLPKGDISISGPKVNVEAPDVNLEGLGG NVEAPDVNLEGLGGKLKGPDVKLPDMSVKT K V N G K L 1 0 2 1 0 0 2 3 0 0 2 1 0 0 1 0 0 0 0 3 0 0 16 0 1609.8312 Q09666 Q09666 664 679 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.1913E-11 152.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 2 1 2 0.95299 0.91755 14.943 12 Median 0.91791 0.92261 16.718 3 0 Plateau 0.99553 0.8877 NaN 1 0 Median 1.0468 1.1124 3.3242 3 0 Plateau 1.0229 0.93628 3.6524 2 0 Median 0.91895 0.96219 NaN 1 0 Median 0.89053 0.75369 5.3038 2 0 Median 280520000 139540000 140980000 126560000 65861000 60698000 25376000 11909000 13468000 104250000 49501000 54752000 9052800 4476800 4576000 13704000 6967700 6736600 1574000 826960 747000 37053 2749 38955 196400;196401;196402;196403;196404;196405;196406;196407;196408;196409;196410;196411 199677;199678;199679;199680;199681;199682;199683;199684;199685;199686;199687;199688;199689;199690;199691;199692;199693;199694 199677 18 VNVIHAR VYRDDIGRNAVDAFRVNVIHARQQVRSPVT RNAVDAFRVNVIHARQQVRSPVTNIARTSF R V N A R Q 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 2 0 0 7 0 807.47152 A0A087WY71;E9PFW3;Q96CW1;C9JJ47;C9JTK4;C9JGT8;C9JJD3;C9JPV8 A0A087WY71 34 40 AP2M1 AP-2 complex subunit mu yes no 2 0.026776 52.683 By matching By MS/MS By MS/MS 1 1 1 1.1816 1.0994 4.2354 3 Median 1.1816 1.1528 NaN 1 0 Median 1.2043 1.0594 NaN 1 0 Median 1.1315 1.0994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1242000 579630 662410 94627 39558 55069 564380 257810 306560 583040 282260 300780 0 0 0 0 0 0 0 0 0 37054 78 38956 196412;196413;196414 199695;199696;199697 199696 3 VNVPVIGGHAGK ANTFVAELKGLDPARVNVPVIGGHAGKTII PARVNVPVIGGHAGKTIIPLISQCTPKVDF R V N G K T 1 0 1 0 0 0 0 3 1 1 0 1 0 0 1 0 0 0 0 3 0 0 12 0 1146.6509 P40926;G3XAL0 P40926 192 203 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.00052884 76.1 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.1428 1.0342 17.629 8 Median 0.96963 0.92834 18.049 4 0 Median 1.4029 1.2009 8.5076 2 0 Median 0.85271 0.82251 NaN 1 0 Median 1.2704 1.0621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 415260000 202940000 212320000 282220000 143670000 138550000 70185000 27578000 42607000 44217000 23522000 20695000 18638000 8164800 10473000 0 0 0 0 0 0 37055 2292 38957 196415;196416;196417;196418;196419;196420;196421;196422 199698;199699;199700;199701;199702;199703;199704;199705;199706;199707;199708;199709;199710;199711;199712 199709 15 VNVTGIYR FAHNDLVDKVQPGDRVNVTGIYRAVPIRVN KVQPGDRVNVTGIYRAVPIRVNPRVSNVKS R V N Y R A 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 2 0 0 8 0 920.50797 A0A3B3IU45;P33991;E5RG31;A0A3B3ITP6 A0A3B3IU45 338 345 MCM4 DNA replication licensing factor MCM4 yes no 2 5.1994E-19 158.12 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1.2055 1.0482 18.932 7 Median 0.91465 0.88085 2.0504 2 0 Median 1.3004 1.102 7.0742 2 0 Median 1.2152 1.2948 24.042 2 1 Median 1.2055 1.0266 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76981000 35123000 41858000 20507000 10106000 10401000 31464000 13290000 18174000 22920000 10720000 12201000 2089200 1007800 1081400 0 0 0 0 0 0 37056 441 38958 196423;196424;196425;196426;196427;196428;196429 199713;199714;199715;199716;199717;199718;199719;199720;199721;199722 199717 10 VNVTVDYIR FEAREFLRKKLIGKKVNVTVDYIRPASPAT KLIGKKVNVTVDYIRPASPATETVPAFSER K V N I R P 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 3 0 0 9 0 1077.5819 Q7KZF4 Q7KZF4 415 423 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0043669 60.91 By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1.1939 1.0449 14.198 7 Median 1.144 1.0904 5.0673 2 0 Median 1.1803 1.0016 5.8632 2 0 Median 1.5328 1.4802 NaN 1 0 Median 1.1939 1.0135 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2743 1.0449 NaN 1 0 Median 23517000 10679000 12837000 11203000 4658500 6544900 4721400 2197400 2524100 1719000 566280 1152700 5730000 3196000 2534000 0 0 0 142780 61077 81700 37057 3214 38959 196430;196431;196432;196433;196434;196435;196436 199723;199724 199724 2 VNVTVDYIRPASPATETVPAFSER FEAREFLRKKLIGKKVNVTVDYIRPASPAT PASPATETVPAFSERTCATVTIGGINIAEA K V N E R T 3 2 1 1 0 0 2 0 0 1 0 0 0 1 3 2 3 0 1 4 0 0 24 1 2618.334 Q7KZF4 Q7KZF4 415 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 3.9836E-29 110.94 By MS/MS By MS/MS By MS/MS 1 2 1 0.71914 0.77973 15.129 4 Median 0.61102 0.67885 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71914 0.85251 18.312 2 0 Median 0.82917 0.81175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41444000 24512000 16932000 25404000 15113000 10291000 0 0 0 13612000 8129100 5483000 2428000 1270300 1157700 0 0 0 0 0 0 37058 3214 38960 196437;196438;196439;196440 199725;199726;199727;199728;199729 199726 5 VNVVAPGFVHTDMTK FSRALAKEVARKKIRVNVVAPGFVHTDMTK VNVVAPGFVHTDMTKDLKEEHLKKNIPLGR R V N T K D 1 0 1 1 0 0 0 1 1 0 0 1 1 1 1 0 2 0 0 4 0 0 15 0 1613.8236 Q8N4T8 Q8N4T8 173 187 CBR4 Carbonyl reductase family member 4 yes yes 3 0.056695 10.949 By MS/MS 1 0.52354 0.48826 NaN 1 Median 0.52354 0.48826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10239000 7112900 3125800 10239000 7112900 3125800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37059 3375 38961 196441 199730 199730 1 VNWATTPSSQK LAAMNGRKILGKEVKVNWATTPSSQKKDTS KEVKVNWATTPSSQKKDTSNHFHVFVGDLS K V N Q K K 1 0 1 0 0 1 0 0 0 0 0 1 0 0 1 2 2 1 0 1 0 0 11 0 1217.6041 Q01085;E7ETJ9;E7ETC0;A6NKZ9;E5RG67;C9JTN7;H7BY49;F8W8I6;P31483;E5RGV5 Q01085 80 90 TIAL1;TIA1 Nucleolysin TIAR;Nucleolysin TIA-1 isoform p40 no no 2 0.00019975 96.331 By MS/MS By MS/MS 1 1 0.91228 0.85638 0.44101 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87048 0.85905 NaN 1 0 Median 0.95609 0.85371 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7297300 3870800 3426600 0 0 0 0 0 0 4501900 2460100 2041700 2795500 1410600 1384800 0 0 0 0 0 0 37060 2682;724;1086 38962 196442;196443 199731;199732;199733 199731 3 VNWTPEINK EREINITSALAEKIKVNWTPEINKEHLLQG LAEKIKVNWTPEINKEHLLQGLLPDVQVPT K V N N K E 0 0 2 0 0 0 1 0 0 1 0 1 0 0 1 0 1 1 0 1 0 0 9 0 1099.5662 A6NHR9;J3KTL8 A6NHR9 1093 1101 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.06287 45.335 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37061 518 38963 196444 199734 199734 1 VNYDTTESK PNAQGDAFKTLFVARVNYDTTESKLRREFE TLFVARVNYDTTESKLRREFEVYGPIKRIH R V N S K L 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 2 0 1 1 0 0 9 0 1055.4771 P08621;M0QYR1 P08621 110 118 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes no 2 0.049206 31.229 By matching By MS/MS By matching 1 1 1 0.98102 0.90477 11.798 3 Median NaN NaN NaN 0 0 Median 0.87341 0.79208 NaN 1 0 Median 0.98102 1.0022 NaN 1 0 Median 1.0294 0.90477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1940600 979010 961640 0 0 0 279750 147580 132170 1494500 739430 755050 166410 91991 74424 0 0 0 0 0 0 37062 1905 38964 196445;196446;196447 199735 199735 1 VNYGAYINDFK KAGATLDLLVENMGRVNYGAYINDFKGLVS NMGRVNYGAYINDFKGLVSNLTLSSNILTD R V N F K G 1 0 2 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 2 1 0 0 11 0 1302.6245 E7EQ29;P16278 E7EQ29 352 362 GLB1 Beta-galactosidase yes no 2 0.0025641 52.79 By MS/MS By matching 1 1 1.2709 1.1568 34.331 2 Median 0.94587 0.90745 NaN 1 0 Median 1.7076 1.4746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5897000 2782900 3114100 4438200 2238500 2199600 1458800 544350 914440 0 0 0 0 0 0 0 0 0 0 0 0 37063 874 38965 196448;196449 199736;199737 199737 2 VPADLGAEAGLQQLLGALR EAELGAERSGLRVVRVPADLGAEAGLQQLL LGAEAGLQQLLGALRELPRPKGLQRLLLIN R V P L R E 4 1 0 1 0 2 1 3 0 0 5 0 0 0 1 0 0 0 0 1 0 0 19 0 1891.0527 P35270 P35270 66 84 SPR Sepiapterin reductase yes yes 2 0.0013329 34.386 By matching By MS/MS 1 2 1.0992 0.93597 46.21 3 Median 0.88214 0.83063 NaN 1 0 Median 1.5464 1.351 51.9 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2731900 1313100 1418800 1505900 783280 722630 1226000 529800 696180 0 0 0 0 0 0 0 0 0 0 0 0 37064 2241 38966 196450;196451;196452 199738 199738 1 VPADLLKR NRTETVTSFRKRESKVPADLLKRAFVRMST FRKRESKVPADLLKRAFVRMSTSPEAFLAL K V P K R A 1 1 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 8 1 910.56 P78527 P78527 3878 3885 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.014803 58.917 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 2 1 1 2 1.3031 1.2138 21.762 7 Median 0.85051 0.87532 NaN 1 0 Median 1.4173 1.3408 NaN 1 0 Median 0.78956 0.91428 NaN 1 0 Median 1.3031 1.2138 NaN 1 0 Median 0.9098 1.0285 NaN 1 0 Median 1.6489 1.4553 8.8328 2 0 Median 22537000 10576000 11961000 4642000 2537800 2104200 3033100 1266400 1766800 7547800 3291300 4256500 666390 325450 340950 4165200 2203200 1962000 2482900 951890 1531100 37065 2647 38967 196453;196454;196455;196456;196457;196458;196459;196460 199739;199740;199741;199742;199743 199740 5 VPADTEVVCAPPTAYIDFAR KQSLGELIGTLNAAKVPADTEVVCAPPTAY EVVCAPPTAYIDFARQKLDPKIAVAAQNCY K V P A R Q 4 1 0 2 1 0 1 0 0 1 0 0 0 1 3 0 2 0 1 3 0 0 20 0 2191.062 P60174 P60174 71 90 TPI1 Triosephosphate isomerase yes yes 2 2.2442E-07 60.448 By MS/MS By MS/MS 1 1 0.71925 0.64363 2.65 2 Median 0.66978 0.63168 NaN 1 0 Median 0.77238 0.65581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5328700 3053700 2275000 3368400 1892700 1475700 1960300 1161000 799340 0 0 0 0 0 0 0 0 0 0 0 0 37066 2523 38968 196461;196462 199744;199745;199746 199744 3 VPAEGAPTAAVAEVR ______________________________ VPAEGAPTAAVAEVRCPGPAPLRLLEWRVA R V P V R C 5 1 0 0 0 0 2 1 0 0 0 0 0 0 2 0 1 0 0 3 0 0 15 0 1436.7623 A0A0J9YWB6;Q9Y5B0 A0A0J9YWB6 9 23 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase yes no 2 0.00022796 72.652 By MS/MS 1 0.63972 0.61859 NaN 1 Median 0.63972 0.61859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4167700 2517700 1650100 4167700 2517700 1650100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37067 287 38969 196463 199747 199747 1 VPAEGLEEVLTTPETVLTGHTEK RLAVAGEDARIRLWRVPAEGLEEVLTTPET VLTTPETVLTGHTEKICSLRFHPLAANVLA R V P E K I 1 0 0 0 0 0 5 2 1 0 3 1 0 0 2 0 5 0 0 3 0 0 23 0 2449.2588 A0A0A6YYL4;P57737 A0A0A6YYL4 574 596 CORO7-PAM16;CORO7 Coronin;Coronin-7 yes no 3 1.3735E-11 52.061 By MS/MS By MS/MS By matching 1 2 1 0.87188 0.82565 15.296 4 Median 0.67313 0.66628 NaN 1 0 Median 1.0486 0.91127 2.6883 2 0 Median 0.73158 0.76243 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11030000 5893300 5136700 2941000 1750100 1190900 7459200 3781700 3677500 629940 361590 268350 0 0 0 0 0 0 0 0 0 37068 209 38970 196464;196465;196466;196467 199748;199749 199749 2 VPAGNWVLIEGVDQPIVK RLWISVARYHIEVNRVPAGNWVLIEGVDQP GNWVLIEGVDQPIVKTATITEPRGNEEAQI R V P V K T 1 0 1 1 0 1 1 2 0 2 1 1 0 0 2 0 0 1 0 4 0 0 18 0 1933.0673 Q15029 Q15029 544 561 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 1.3925E-11 89.301 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 4 3 3 2 0.83449 0.80073 42.517 17 Median 0.81272 0.81366 2.2657 2 0 Median 1.0044 0.86745 9.6617 3 0 Plateau 0.6514 0.7149 9.2393 4 0 Median 0.99046 0.8392 2.6879 3 0 Plateau 0.74659 0.7698 15.079 3 1 Median 2.3137 1.9313 110.56 2 0 Median 36156000 20025000 16131000 3770800 2017500 1753300 6375100 3300100 3075000 15335000 8800600 6534100 2623400 1298200 1325200 6895800 4123400 2772400 1156300 485330 670980 37069 2917 38971 196468;196469;196470;196471;196472;196473;196474;196475;196476;196477;196478;196479;196480;196481;196482;196483;196484 199750;199751;199752;199753;199754;199755;199756;199757;199758;199759;199760;199761 199758 12 VPAHGHPVIER YCSNISFYLILKARRVPAHGHPVIERLVTY KARRVPAHGHPVIERLVTYRNLINKLSVVD R V P E R L 1 1 0 0 0 0 1 1 2 1 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1210.6571 Q9NQZ2 Q9NQZ2 290 300 UTP3 Something about silencing protein 10 yes yes 3 0.027494 22.232 By matching By matching By MS/MS By matching 1 1 2 1 0.8277 0.78149 23.161 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0963 1.2874 NaN 1 0 Median 0.76395 0.78149 NaN 1 0 Median 0.77448 0.80454 7.6078 2 0 Median 0.8277 0.72762 NaN 1 0 Median 1214600 586150 628420 0 0 0 0 0 0 50821 24867 25954 173580 95079 78502 683420 298230 385180 306750 167970 138780 37070 4071 38972 196485;196486;196487;196488;196489 199762 199762 1 VPAINVNDSVTK GVHNLYKMMANGILKVPAINVNDSVTKSKF ILKVPAINVNDSVTKSKFDNLYGCRESLID K V P T K S 1 0 2 1 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 3 0 0 12 0 1255.6772 P23526 P23526 175 186 AHCY Adenosylhomocysteinase yes yes 2 2.7297E-09 169.58 By MS/MS By MS/MS By MS/MS By MS/MS By matching 10 7 2 2 2 0.99759 0.93292 21.517 23 Median 0.99079 0.92624 23.378 10 1 Median 1.1555 0.97471 28.035 7 1 Median 0.99426 0.98855 8.1912 2 0 Median 1.1108 0.96975 12.596 2 0 Median 0.86458 0.85471 0.24044 2 0 Median NaN NaN NaN 0 0 Median 896000000 419520000 476480000 460410000 218180000 242240000 329930000 150240000 179690000 58678000 28953000 29725000 41871000 19572000 22299000 5109200 2573400 2535700 0 0 0 37071 2116 38973 196490;196491;196492;196493;196494;196495;196496;196497;196498;196499;196500;196501;196502;196503;196504;196505;196506;196507;196508;196509;196510;196511;196512 199763;199764;199765;199766;199767;199768;199769;199770;199771;199772;199773;199774;199775;199776;199777;199778;199779;199780;199781;199782;199783;199784;199785;199786;199787;199788 199785 26 VPANPASVSTVPSK KVPTTLMPVNTVALKVPANPASVSTVPSKL KVPANPASVSTVPSKLPTSSKPPGAVPSNA K V P S K L 2 0 1 0 0 0 0 0 0 0 0 1 0 0 3 3 1 0 0 3 0 0 14 0 1352.73 Q7Z434 Q7Z434 312 325 MAVS Mitochondrial antiviral-signaling protein yes yes 2 0.0001649 79.659 By MS/MS By MS/MS 1 2 0.70109 0.596 5.5549 3 Median 0.59673 0.57367 NaN 1 0 Median 0.71467 0.61762 5.0393 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9012900 5475800 3537000 3442400 2255400 1187000 5570500 3220400 2350100 0 0 0 0 0 0 0 0 0 0 0 0 37072 3244 38974 196513;196514;196515 199789;199790;199791;199792 199792 4 VPAPFKPITR INRSMDPKNMFAIWRVPAPFKPITRKSVGH FAIWRVPAPFKPITRKSVGHRMGGGKGAID R V P T R K 1 1 0 0 0 0 0 0 0 1 0 1 0 1 3 0 1 0 0 1 0 0 10 1 1124.6706 Q9NX20;E9PI14 Q9NX20 124 133 MRPL16 39S ribosomal protein L16, mitochondrial yes no 2 0.001855 88.177 By MS/MS By MS/MS 1 1 0.80705 0.84365 29.493 2 Median 0.65497 0.68484 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99444 1.0393 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20656000 11337000 9318400 9402300 5239300 4163000 0 0 0 11253000 6097900 5155400 0 0 0 0 0 0 0 0 0 37073 4155 38975 196516;196517 199793;199794 199793 2 VPATLQVLQTLPEENYQVLR YPHVVGFLNIDESQRVPATLQVLQTLPEEN QVLQTLPEENYQVLRFLTAFLVQISAHSDQ R V P L R F 1 1 1 0 0 3 2 0 0 0 4 0 0 0 2 0 2 0 1 3 0 0 20 0 2310.2583 Q07960;H0YE29 Q07960 350 369 ARHGAP1 Rho GTPase-activating protein 1 yes no 2;3 0.0016606 29.689 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.87006 0.86811 13.402 5 Median 0.80376 0.79785 11.935 2 0 Median 1.0216 0.89055 NaN 1 0 Median 1.0651 1.0681 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79961 0.85534 NaN 1 0 Median NaN NaN NaN 0 0 Median 10054000 5271200 4782300 6964200 3744800 3219500 1082800 514010 568740 1610200 821020 789220 0 0 0 396310 191430 204880 0 0 0 37074 2734 38976 196518;196519;196520;196521;196522 199795;199796;199797;199798;199799 199795 5 VPATNLILGEGR NFHGGHFEIHFNQVRVPATNLILGEGRGFE QVRVPATNLILGEGRGFEISQGRLGPGRIH R V P G R G 1 1 1 0 0 0 1 2 0 1 2 0 0 0 1 0 1 0 0 1 0 0 12 0 1238.6983 Q709F0 Q709F0 608 619 ACAD11 Acyl-CoA dehydrogenase family member 11 yes yes 2 0.00015936 87.298 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.0774 1.0192 22.493 5 Median 1.0774 1.0192 NaN 1 0 Median 1.2078 1.0683 NaN 1 0 Median 0.70282 0.73163 5.29 2 1 Median 1.3698 1.1804 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38655000 20913000 17742000 13981000 7162500 6819000 1259400 506500 752930 19127000 11390000 7737200 4287000 1853900 2433200 0 0 0 0 0 0 37075 3206 38977 196523;196524;196525;196526;196527 199800;199801;199802;199803;199804 199802 5 VPATTLYAHFEQANIK VIYVVERSPNGTSRRVPATTLYAHFEQANI PATTLYAHFEQANIKTQLQQLGVTLSMTRT R V P I K T 3 0 1 0 0 1 1 0 1 1 1 1 0 1 1 0 2 0 1 1 0 0 16 0 1801.9363 Q7Z3B4 Q7Z3B4 256 271 NUP54 Nucleoporin p54 yes yes 3 0.0006286 37.177 By MS/MS By matching 1 1 1.0275 0.94396 5.3623 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93688 0.90883 NaN 1 0 Median 1.1269 0.98044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16502000 9693900 6808200 0 0 0 0 0 0 15849000 9343000 6505600 653410 350860 302550 0 0 0 0 0 0 37076 3239 38978 196528;196529 199805;199806 199806 2 VPDDIYKTHLENNR NFLALARELDIMEPKVPDDIYKTHLENNRF KVPDDIYKTHLENNRFGGSGSQVDSARMNL K V P N R F 0 1 2 2 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 0 0 14 1 1712.8482 Q13200 Q13200 344 357 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3;4 0.0070203 26.729 By MS/MS 2 1.4143 1.4702 NaN 1 Median 1.4143 1.4702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3114700 1470700 1643900 3114700 1470700 1643900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37077 2796 38979 196530;196531 199807;199808 199807 2 VPDEHMIPIENLMNPR KGRPGIIRGMDMGAKVPDEHMIPIENLMNP PDEHMIPIENLMNPRALDFHAETGFIYFAD K V P P R A 0 1 2 1 0 0 2 0 1 2 1 0 2 0 3 0 0 0 0 1 0 0 16 0 1903.9284 Q07954 Q07954 547 562 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 3 4.1348E-05 61.097 By MS/MS 1 0.344 0.34443 NaN 1 Median 0.344 0.34443 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5129800 3754100 1375600 5129800 3754100 1375600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37078 2733 38980 196532 199809 199809 1 VPDESEVVVER YLKSDNMIRITAVCKVPDESEVVVERDIIL AVCKVPDESEVVVERDIILDNPTLTLEVLN K V P E R D 0 1 0 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 11 0 1256.6248 A0A494C0J7;Q08188 A0A494C0J7 597 607 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes no 2 0.0031191 74.162 By MS/MS 2 0.032368 0.02713 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.032368 0.02713 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1551100 1496500 54581 0 0 0 0 0 0 0 0 0 1551100 1496500 54581 0 0 0 0 0 0 37079 459 38981 196533;196534 199810;199811 199810 2 VPDFSEYR LNVPASVCYSHTDIKVPDFSEYRRLEVLDS YSHTDIKVPDFSEYRRLEVLDSTKSSRESS K V P Y R R 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 8 0 1011.4662 P47985;P0C7P4 P47985 85 92 UQCRFS1;UQCRFS1P1 Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1 yes no 2 0.0038087 85.212 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.91511 0.86152 31.168 6 Median 0.91225 0.86642 NaN 1 0 Median 1.6039 1.3606 NaN 1 0 Median 0.89378 0.85664 NaN 1 0 Median 1.8267 1.501 NaN 1 0 Median 0.75305 0.72783 NaN 1 0 Median 0.91797 0.7446 NaN 1 0 Median 29048000 14249000 14799000 19589000 9794600 9794400 2297200 813900 1483300 5161200 2753900 2407300 445720 163520 282200 514660 240600 274060 1040200 482890 557260 37080 2357 38982 196535;196536;196537;196538;196539;196540 199812;199813;199814;199815;199816;199817 199812 6 VPDGMVGFIIGR MHQQQSRSVMTEEYKVPDGMVGFIIGRGGE EYKVPDGMVGFIIGRGGEQISRIQQESGCK K V P G R G 0 1 0 1 0 0 0 3 0 2 0 0 1 1 1 0 0 0 0 2 0 0 12 0 1259.6696 Q96AE4;E9PEB5;C9JSZ1 Q96AE4 107 118 FUBP1 Far upstream element-binding protein 1 no no 2 0.0012241 55.567 By matching By MS/MS By MS/MS 1 1 2 1.2082 1.0546 3.9012 4 Median NaN NaN NaN 0 0 Median 1.2258 1.0799 NaN 1 0 Median 1.1008 1.1075 NaN 1 0 Median 1.2082 1.025 0.66429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45584000 21676000 23908000 0 0 0 1397000 611370 785580 39585000 18990000 20594000 4602000 2074300 2527700 0 0 0 0 0 0 37081 3599;723 38983 196541;196542;196543;196544 199818;199819;199820;199821;199822 199818 5 VPDGMVGLIIGR PIHPPPRTSMTEEYRVPDGMVGLIIGRGGE EYRVPDGMVGLIIGRGGEQINKIQQDSGCK R V P G R G 0 1 0 1 0 0 0 3 0 2 1 0 1 0 1 0 0 0 0 2 0 0 12 0 1225.6853 Q92945;A0A087WTP3;M0QYH3;M0QXW7 Q92945 151 162 KHSRP Far upstream element-binding protein 2 yes no 2 3.4142E-06 108.57 By MS/MS By MS/MS By matching 5 2 1 1.0989 0.98883 54.752 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2981 1.3681 63.977 5 0 Median 1.0961 0.93619 5.2845 2 0 Median NaN NaN NaN 0 0 Median 1.0516 0.92469 NaN 1 0 Median 74121000 38596000 35525000 0 0 0 0 0 0 49899000 26849000 23050000 23807000 11617000 12189000 0 0 0 415340 129050 286290 37082 3568 38984 196545;196546;196547;196548;196549;196550;196551;196552 199823;199824;199825;199826;199827;199828;199829;199830;199831 199823 9 VPDNYGDEIAIELR GDLAPLWKGIGHVIKVPDNYGDEIAIELRS KVPDNYGDEIAIELRSSVGAPVEVTHNFQV K V P L R S 1 1 1 2 0 0 2 1 0 2 1 0 0 0 1 0 0 0 1 1 0 0 14 0 1602.789 Q92900 Q92900 394 407 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0004805 70.488 By MS/MS 2 0.52399 0.57642 8.6928 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52399 0.57642 8.6928 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9083300 6360000 2723400 0 0 0 0 0 0 9083300 6360000 2723400 0 0 0 0 0 0 0 0 0 37083 3564 38985 196553;196554 199832;199833 199833 2 VPDSTYEMIGGLDK PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQ KVPDSTYEMIGGLDKQIKEIKEVIELPVKH K V P D K Q 0 0 0 2 0 0 1 2 0 1 1 1 1 0 1 1 1 0 1 1 0 0 14 0 1523.7178 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRW1;J3QSE0 P62195 143 156 PSMC5 26S protease regulatory subunit 8 yes no 2 0.00025741 75.479 By MS/MS By matching By MS/MS By matching 1 2 2 1 1.0027 0.92612 12.943 6 Median 0.90899 0.84179 NaN 1 0 Median 0.96768 0.82616 0.35694 2 0 Median 1.0415 1.0261 0.99191 2 2 Median 1.2264 1.0942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33308000 17660000 15648000 12940000 6818500 6121400 10026000 5143300 4883200 9893500 5447700 4445900 448010 250530 197480 0 0 0 0 0 0 37084 2572 38986 196555;196556;196557;196558;196559;196560 199834;199835;199836;199837 199835 4 VPDVDIKGPK GDVDVSLPEVEGEMKVPDVDIKGPKVDISA EGEMKVPDVDIKGPKVDISAPDVDVHGPDW K V P P K V 0 0 0 2 0 0 0 1 0 1 0 2 0 0 2 0 0 0 0 2 0 0 10 1 1066.6023 Q09666 Q09666 1354 1363 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.0019325 76.679 By MS/MS By MS/MS 1 1 0.7847 0.87185 7.4993 2 Median 0.76137 0.82682 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80875 0.91933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7177600 3751300 3426300 4271800 2314900 1956900 0 0 0 2905800 1436300 1469500 0 0 0 0 0 0 0 0 0 37085 2749 38987 196561;196562 199838;199839;199840;199841;199842;199843 199842 6 VPDVDIR GNVDISAPKIEGEMQVPDVDIRGPKVDIKA PKIEGEMQVPDVDIRGPKVDIKAPDVEGQG Q V P I R G 0 1 0 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 2 0 0 7 0 812.43922 Q09666 Q09666 1098 1104 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.022964 68.915 By MS/MS By MS/MS By MS/MS 1 1 2 1.0428 0.8708 21.523 4 Median 0.59457 0.5904 NaN 1 1 Median 1.0658 0.85187 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0534 0.92258 5.0596 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65017000 31840000 33176000 6858300 4174200 2684100 34883000 16715000 18168000 0 0 0 23275000 10951000 12324000 0 0 0 0 0 0 37086 2749 38988 196563;196564;196565;196566 199844;199845;199846;199847;199848;199849;199850 199848 7 VPDVLVADPPIAR RFRIDELEPRRPRYRVPDVLVADPPIARLS YRVPDVLVADPPIARLSVSGRDENSVELTM R V P A R L 2 1 0 2 0 0 0 0 0 1 1 0 0 0 3 0 0 0 0 3 0 0 13 0 1360.7715 Q14697;F5H6X6 Q14697 115 127 GANAB Neutral alpha-glucosidase AB yes no 2 0.0015815 51.445 By MS/MS By matching 1 2 0.80039 0.67329 13.082 3 Median 0.57438 0.55376 NaN 1 0 Median 0.80253 0.69134 3.7413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16707000 9396600 7310800 9141800 5235600 3906200 7565600 4161000 3404600 0 0 0 0 0 0 0 0 0 0 0 0 37087 2896 38989 196567;196568;196569 199851;199852 199851 2 VPDVQDGVR SIITYVSSLYDAMPRVPDVQDGVRANELQL YDAMPRVPDVQDGVRANELQLRWQEYRELV R V P V R A 0 1 0 2 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 3 0 0 9 0 983.50361 Q15149;H0YDN1;E9PMV1 Q15149 402 410 PLEC Plectin yes no 2 0.0027536 69.825 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.0933 1.0184 30.063 5 Median 0.90922 0.91605 NaN 1 0 Median 1.6026 1.328 37.539 2 1 Median 1.0933 1.2224 NaN 1 0 Median 0.91407 0.79535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17400000 7787800 9612600 3776500 1900700 1875800 10857000 4408900 6447900 1765200 977990 787190 1002000 500230 501720 0 0 0 0 0 0 37088 2933 38990 196570;196571;196572;196573;196574 199853;199854;199855 199854 3 VPEANILGQIGHGYK LRASSTCPLTFENVKVPEANILGQIGHGYK VPEANILGQIGHGYKYAIGSLNEGRIGIAA K V P Y K Y 1 0 1 0 0 1 1 3 1 2 1 1 0 0 1 0 0 0 1 1 0 0 15 0 1594.8467 P45954 P45954 270 284 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2;3 1.0306E-05 77.379 By MS/MS By MS/MS 2 1 0.74052 0.78488 15.354 3 Median 0.74109 0.68767 18.699 2 1 Median NaN NaN NaN 0 0 Median 0.74052 0.78721 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31408000 17344000 14064000 26864000 15239000 11626000 0 0 0 4543500 2105200 2438300 0 0 0 0 0 0 0 0 0 37089 2330 38991 196575;196576;196577 199856;199857;199858;199859;199860 199858 5 VPEANSSWMDTVIR VNDFIIKASALACLKVPEANSSWMDTVIRQ KVPEANSSWMDTVIRQNHVVDVSVAVSTPA K V P I R Q 1 1 1 1 0 0 1 0 0 1 0 0 1 0 1 2 1 1 0 2 0 0 14 0 1603.7664 P10515;H0YDD4;E9PEJ4 P10515 491 504 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 6.9668E-08 101.39 By MS/MS By matching 1 1 1.0368 0.94157 16.84 2 Median 0.87584 0.83587 NaN 1 0 Median 1.2274 1.0606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11407000 5696700 5710800 9640200 4904800 4735400 1767300 791880 975410 0 0 0 0 0 0 0 0 0 0 0 0 37090 1938 38992 196578;196579 199861;199862 199862 2 VPEEDLKR ATQYFADRDMFCAGRVPEEDLKRTMMACGG DMFCAGRVPEEDLKRTMMACGGSIQTSVNA R V P K R T 0 1 0 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 8 1 984.52401 Q99832 Q99832 314 321 CCT7 T-complex protein 1 subunit eta yes yes 2 0.014644 69.198 By MS/MS By MS/MS 1 1 10.577 10.071 3.2711 2 Median 9.826 9.8405 NaN 1 1 Median 11.385 10.306 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76494000 6293100 70201000 26414000 2409600 24005000 50079000 3883500 46196000 0 0 0 0 0 0 0 0 0 0 0 0 37091 3771 38993 196580;196581 199863;199864 199864 2 VPEESVLPLVQK LSSPSDTKAESPAEKVPEESVLPLVQKSTL AEKVPEESVLPLVQKSTLADYSAQKDLEPE K V P Q K S 0 0 0 0 0 1 2 0 0 0 2 1 0 0 2 1 0 0 0 3 0 0 12 0 1336.7602 S4R3H4;E7EQT4;Q9UKV3 S4R3H4 437 448 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 8.7443E-05 92.445 By matching By MS/MS By matching 1 1 1 0.70173 0.72129 10.096 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66586 0.60314 NaN 1 0 Median 0.70173 0.73516 NaN 1 0 Median 0.74987 0.64325 NaN 1 0 Median 6791300 3985200 2806200 0 0 0 0 0 0 0 0 0 88997 51298 37699 5711000 3321600 2389400 991340 612290 379050 37092 4560 38994 196582;196583;196584 199865;199866 199866 2 VPEGGEGISATEVDSR SVITYVSSIYDAFPKVPEGGEGISATEVDS PEGGEGISATEVDSRWQEYQSRVDSLIPWI K V P S R W 1 1 0 1 0 0 3 3 0 1 0 0 0 0 1 2 1 0 0 2 0 0 16 0 1601.7533 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;E9PNZ4;E9PLY5;E9PLY0 H3BPE1 295 310 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 1.8513E-10 141.38 By MS/MS By MS/MS 1 1 0.72109 0.7413 10.817 2 Median 0.69964 0.68671 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74319 0.80022 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15212000 8365000 6846600 10339000 5477900 4861300 0 0 0 4872500 2887100 1985400 0 0 0 0 0 0 0 0 0 37093 1220 38995 196585;196586 199867;199868;199869;199870 199869 4 VPEGPIPPSTPK EKYFALRNIIQKFEKVPEGPIPPSTPKFAY FEKVPEGPIPPSTPKFAYGKVTLEKLKTVG K V P P K F 0 0 0 0 0 0 1 1 0 1 0 1 0 0 5 1 1 0 0 1 0 0 12 0 1217.6656 E7EQ29;P16278 E7EQ29 229 240 GLB1 Beta-galactosidase yes no 2 0.00062355 66.056 By matching By MS/MS 1 1 0.36853 0.33519 28.663 2 Median 0.28446 0.2737 NaN 1 0 Median 0.47744 0.41051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6228300 4473900 1754300 3062200 2385500 676740 3166000 2088400 1077600 0 0 0 0 0 0 0 0 0 0 0 0 37094 874 38996 196587;196588 199871 199871 1 VPEIEVTVEGPNNNNPQTSAVR LQSPKRPRSPGSNSKVPEIEVTVEGPNNNN VEGPNNNNPQTSAVRTPTQTNGSNVPFKPR K V P V R T 1 1 4 0 0 1 3 1 0 1 0 0 0 0 3 1 2 0 0 4 0 0 22 0 2363.1717 P78347;A0A494C1K3 P78347 681 702 GTF2I General transcription factor II-I yes no 2;3 0 357.88 By MS/MS 3 0.33877 0.37241 0.77437 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33877 0.37241 0.77437 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88635000 65439000 23196000 0 0 0 0 0 0 88635000 65439000 23196000 0 0 0 0 0 0 0 0 0 37095 2642 38997 196589;196590;196591 199872;199873;199874 199873 3 VPEILQLSDALR SEFREGVRKIAREQKVPEILQLSDALRDNI EQKVPEILQLSDALRDNILPELGVRFEDHE K V P L R D 1 1 0 1 0 1 1 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 12 0 1352.7664 P49589;B4DKY1 P49589 607 618 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 5.3399E-06 99.568 By MS/MS By MS/MS By MS/MS 1 2 1 0.86168 0.82651 22.132 4 Median NaN NaN NaN 0 0 Median 0.74991 0.6484 NaN 1 0 Median 0.93208 0.98363 15.358 2 0 Median 0.90182 0.77415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20597000 11411000 9186600 0 0 0 17420000 9812800 7607700 2287700 1155000 1132700 889280 443140 446140 0 0 0 0 0 0 37096 2386 38998 196592;196593;196594;196595 199875;199876;199877;199878;199879 199876 5 VPELFANR DLYTLGCGEQGQLGRVPELFANRGGRQGLE EQGQLGRVPELFANRGGRQGLERLLVPKCV R V P N R G 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 944.50797 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 207 214 RCC1 Regulator of chromosome condensation yes no 2 0.0024173 128.38 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 4 1.07 1.0066 10.132 17 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96449 1.007 6.4237 4 1 Median 1.1747 1.001 10.611 4 0 Median 1.0364 1.0444 13.161 5 0 Median 1.1104 0.92073 9.4772 4 0 Median 654550000 315420000 339130000 0 0 0 0 0 0 264940000 130310000 134630000 235200000 107730000 127470000 104240000 53494000 50741000 50170000 23884000 26286000 37097 2061 38999 196596;196597;196598;196599;196600;196601;196602;196603;196604;196605;196606;196607;196608;196609;196610;196611;196612 199880;199881;199882;199883;199884;199885;199886;199887;199888;199889;199890;199891;199892;199893;199894;199895;199896;199897;199898;199899;199900;199901;199902;199903;199904 199892 25 VPELNVQNGVLK CSPFTVLPALMNEYRVPELNVQNGVLKSLS EYRVPELNVQNGVLKSLSFLFEYIGEMGKD R V P L K S 0 0 2 0 0 1 1 1 0 0 2 1 0 0 1 0 0 0 0 3 0 0 12 0 1308.7402 O75533;H7C341 O75533 1138 1149 SF3B1 Splicing factor 3B subunit 1 yes no 2 1.0876E-14 185.6 By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 0.85044 0.86163 23.668 6 Median NaN NaN NaN 0 0 Median 1.1281 0.95753 NaN 1 0 Median 0.8376 0.89245 NaN 1 0 Median 0.9632 0.83187 NaN 1 0 Median 0.84015 0.86759 6.0087 2 0 Median 0.59805 0.50176 NaN 1 0 Median 98976000 52975000 46000000 0 0 0 6651500 3238700 3412700 23877000 12823000 11053000 4794300 2409000 2385300 62005000 33767000 28238000 1647500 736720 910810 37098 1683 39000 196613;196614;196615;196616;196617;196618 199905;199906;199907;199908;199909;199910;199911 199907 7 VPENTMHAMQQK LLEWIRRTIPWLENRVPENTMHAMQQKLED ENRVPENTMHAMQQKLEDFRDYRRLHKPPK R V P Q K L 1 0 1 0 0 2 1 0 1 0 0 1 2 0 1 0 1 0 0 1 0 0 12 0 1412.6541 P12814;H9KV75 P12814 301 312 ACTN1 Alpha-actinin-1 yes no 2;3 0.00067049 62.303 By matching By MS/MS 1 4 0.97991 0.85774 11.347 5 Median 0.99073 1.0042 NaN 1 0 Median 0.9662 0.84959 9.3616 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13265000 6792500 6472800 489360 271990 217370 12776000 6520500 6255400 0 0 0 0 0 0 0 0 0 0 0 0 37099 1983 39001 196619;196620;196621;196622;196623 199912;199913;199914;199915;199916 199916 5 VPETVSAATQTIK SQNNIGIQTMECSLRVPETVSAATQTIKNV LRVPETVSAATQTIKNVCEQGTSTVDQNFG R V P I K N 2 0 0 0 0 1 1 0 0 1 0 1 0 0 1 1 3 0 0 2 0 0 13 0 1343.7296 A6NNK5;Q12888 A6NNK5 1168 1180 TP53BP1 Tumor suppressor p53-binding protein 1 yes no 2 6.2264E-07 116.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1 1.0472 0.99162 15.737 8 Median NaN NaN NaN 0 0 Median 1.0447 0.91644 11.71 2 0 Median 0.7806 0.84653 21.812 2 0 Median 1.2022 1.079 3.4749 3 0 Median NaN NaN NaN 0 0 Median 0.97026 0.81016 NaN 1 0 Median 103180000 54605000 48578000 0 0 0 7296200 3349000 3947200 72352000 40804000 31548000 22227000 9840000 12387000 0 0 0 1307400 611880 695470 37100 530 39002 196624;196625;196626;196627;196628;196629;196630;196631;196632 199917;199918;199919;199920;199921;199922;199923;199924;199925;199926;199927;199928;199929 199928 12 VPEVPTAPATDAAPK PQESAHRRMEPPASKVPEVPTAPATDAAPK VPEVPTAPATDAAPKRVEIQMPKPAEAPTA K V P P K R 4 0 0 1 0 0 1 0 0 0 0 1 0 0 4 0 2 0 0 2 0 0 15 0 1462.7668 Q9UHD8;K7EJ51;K7ERG1 Q9UHD8 172 186 SEPT9 Septin-9 yes no 2 3.2474E-11 144.1 By MS/MS By matching By MS/MS By MS/MS By matching By MS/MS 2 1 3 5 1 3 0.63713 0.52575 41.753 15 Median 1.3287 1.2675 33.429 2 1 Median 1.113 1.0062 NaN 1 0 Median 0.54276 0.51862 19.029 3 0 Plateau 0.69074 0.58275 19.707 5 0 Median 0.34427 0.35427 NaN 1 0 Median 0.79516 0.65041 18.1 3 0 Plateau 433050000 267270000 165770000 10943000 4235400 6707500 385530 157990 227540 278050000 180900000 97146000 130180000 73479000 56706000 6320200 4705300 1614900 7164300 3794500 3369800 37101 4276 39003 196633;196634;196635;196636;196637;196638;196639;196640;196641;196642;196643;196644;196645;196646;196647 199930;199931;199932;199933;199934;199935;199936;199937;199938;199939;199940;199941;199942;199943;199944;199945;199946;199947;199948;199949;199950;199951;199952;199953;199954 199947 24 VPEWVDTVK VRALAAFLKKSGKLKVPEWVDTVKLAKHKE KSGKLKVPEWVDTVKLAKHKELAPYDENWF K V P V K L 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 3 0 0 9 0 1071.5601 P39019;M0R2L9;M0QYF7;M0R140 P39019 30 38 RPS19 40S ribosomal protein S19 yes no 2 0.00049317 111.95 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 2 1.1306 0.90479 7.4137 8 Median 0.95138 0.89091 NaN 1 0 Median 1.1681 0.99629 NaN 1 0 Median 0.93216 0.8846 NaN 1 1 Median 1.1385 0.91889 5.866 3 0 Plateau NaN NaN NaN 0 0 Median 1.0837 0.89516 14.578 2 0 Median 188000000 87266000 100740000 105800000 51712000 54091000 31872000 10139000 21733000 34803000 18270000 16533000 10852000 5061900 5790200 0 0 0 4673800 2083800 2590000 37102 2280 39004 196648;196649;196650;196651;196652;196653;196654;196655;196656;196657 199955;199956;199957;199958;199959;199960;199961;199962 199957 8 VPFESEDNQGIVYAWVGR TDSSLLNSEFCFILKVPFESEDNQGIVYAW ESEDNQGIVYAWVGRASDPDEAKLAEDILN K V P G R A 1 1 1 1 0 1 2 2 0 1 0 0 0 1 1 1 0 1 1 3 0 0 18 0 2064.9905 Q13045;K7EQZ7 Q13045 1090 1107 FLII Protein flightless-1 homolog yes no 3 0.056177 9.1638 By matching By MS/MS By matching 1 1 1 0.60256 0.6325 14.582 3 Plateau 0.59651 0.59459 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.60256 0.6325 NaN 1 0 Median 0.56962 0.47912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2341600 1455600 886060 763370 441940 321430 0 0 0 1283200 855230 428020 295030 158410 136620 0 0 0 0 0 0 37103 2781 39005 196658;196659;196660 199963 199963 1 VPFIYGHK EYAGPLFIYLLFYFRVPFIYGHKYDFTSSR YLLFYFRVPFIYGHKYDFTSSRHTVVHLAC R V P H K Y 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 0 1 1 0 0 8 0 959.52289 Q9NZ01;M0R2N5 Q9NZ01 109 116 TECR Very-long-chain enoyl-CoA reductase yes no 2 0.046072 53.554 By MS/MS 1 0.64094 0.57209 NaN 1 Median NaN NaN NaN 0 0 Median 0.64094 0.57209 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31208000 21966000 9242300 0 0 0 31208000 21966000 9242300 0 0 0 0 0 0 0 0 0 0 0 0 37104 4181 39006 196661 199964 199964 1 VPFLDHR LRADRTTAAHGLELRVPFLDHRFSSYYLSL AAHGLELRVPFLDHRFSSYYLSLPPEMRIP R V P H R F 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 7 0 882.47119 P08243 P08243 418 424 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2 0.027519 51.787 By MS/MS By MS/MS 1 1 0.97379 0.90178 35.905 2 Median 1.173 1.1624 NaN 1 0 Median 0.80841 0.69958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11465000 5571100 5894400 3193300 1664600 1528700 8272200 3906500 4365700 0 0 0 0 0 0 0 0 0 0 0 0 37105 1901 39007 196662;196663 199965;199966 199966 2 VPFLEFK GGDLEKCHRAPIFMRVPFLEFKAPGIPSGM HRAPIFMRVPFLEFKAPGIPSGMETLKDTP R V P F K A 0 0 0 0 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 7 0 878.49019 P50225;H3BRY5;P50226;E9PKR8;E9PKW4 P50225 79 85 SULT1A1;SULT1A2 Sulfotransferase 1A1;Sulfotransferase;Sulfotransferase 1A2 no no 2 0.038368 45.882 By MS/MS 1 0.87042 0.78914 NaN 1 Median 0.87042 0.78914 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41522000 22148000 19374000 41522000 22148000 19374000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37106 2410 39008 196664 199967;199968;199969 199969 3 VPFLPGDSDLDQLTR DMWAVGCILAELLLRVPFLPGDSDLDQLTR VPFLPGDSDLDQLTRIFETLGTPTEEQWPD R V P T R I 0 1 0 3 0 1 0 1 0 0 3 0 0 1 2 1 1 0 0 1 0 0 15 0 1671.8468 P50613;D6REC6;D6R9G1;D6RAD4 P50613 210 224 CDK7 Cyclin-dependent kinase 7 yes no 2 2.354E-09 101.95 By MS/MS By MS/MS By matching 1 1 1 0.83343 0.72827 4.076 3 Median NaN NaN NaN 0 0 Median 0.837 0.72943 NaN 1 0 Median 0.68588 0.67918 NaN 1 0 Median 0.83343 0.72827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6358200 3731300 2626900 0 0 0 744420 391120 353300 4968900 2939300 2029600 644900 400840 244050 0 0 0 0 0 0 37107 2419 39009 196665;196666;196667 199970;199971;199972 199971 3 VPFLVLECPNLK ______________________________ LYRVPFLVLECPNLKLKKPPWLHMPSAMTV R V P L K L 0 0 1 0 1 0 1 0 0 0 3 1 0 1 2 0 0 0 0 2 0 0 12 0 1427.7847 Q9NRP0;A0A087WUD3 Q9NRP0 7 18 OSTC Oligosaccharyltransferase complex subunit OSTC yes no 2 0.00011282 90.629 By matching By MS/MS By matching 2 2 1 0.83974 0.81517 11.945 5 Median 0.71054 0.683 6.6154 2 0 Median 0.99892 0.85201 1.6782 2 0 Median 0.83974 0.81517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17424000 8885700 8537900 3084700 1747600 1337100 9964400 4895400 5069000 4374500 2242600 2131900 0 0 0 0 0 0 0 0 0 37108 4086 39010 196668;196669;196670;196671;196672 199973;199974;199975;199976 199973 4 VPFNVDFDKLPR DVMTRDLYQGLLLQRVPFNVDFDKLPRHKK LQRVPFNVDFDKLPRHKKLERLCLTLGIPQ R V P P R H 0 1 1 2 0 0 0 0 0 0 1 1 0 2 2 0 0 0 0 2 0 0 12 1 1445.7667 A0A0A0MTC1;A0A0A0MTR7;Q63HN8 A0A0A0MTC1 2408 2419 RNF213 E3 ubiquitin-protein ligase RNF213 yes no 3 0.00045228 53.252 By MS/MS 1 0.63747 0.65624 NaN 1 Median 0.63747 0.65624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4789100 2974000 1815100 4789100 2974000 1815100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37109 189 39011 196673 199977 199977 1 VPFPLTLR GGWINMTFSGFVTTKVPFPLTLRFKPMLQQ SGFVTTKVPFPLTLRFKPMLQQGIELLTLD K V P L R F 0 1 0 0 0 0 0 0 0 0 2 0 0 1 2 0 1 0 0 1 0 0 8 0 941.56984 Q9P0I2;C9JLM9 Q9P0I2 140 147 EMC3 ER membrane protein complex subunit 3 yes no 2 0.028622 40.268 By MS/MS By matching By MS/MS 1 1 1 0.91582 0.8638 2.7069 3 Median 0.90105 0.85632 NaN 1 0 Median 1.0536 0.90079 NaN 1 0 Median 0.91582 0.8638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7058600 3856000 3202600 4481100 2474900 2006200 449960 222920 227040 2127500 1158200 969350 0 0 0 0 0 0 0 0 0 37110 4202 39012 196674;196675;196676 199978;199979 199978 2 VPFSLLR ______________________________ ______________________________ R V P L R G 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 7 0 830.50142 P04792;F8WE04 P04792 6 12 HSPB1 Heat shock protein beta-1 yes no 2 0.0026408 117.7 By MS/MS By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1 1.0802 0.97282 28.681 6 Median 0.96797 0.91936 NaN 1 0 Median 1.2054 1.0294 NaN 1 0 Median 0.91465 0.89217 NaN 1 0 Median 1.6025 1.3008 NaN 1 0 Median 0.61332 0.60415 NaN 1 0 Median 1.5758 1.3047 NaN 1 0 Median 23788000 12300000 11489000 19926000 10291000 9634500 745780 319820 425960 344830 151230 193600 116150 45047 71106 2495700 1430800 1064800 160410 61754 98654 37111 1851 39013 196677;196678;196679;196680;196681;196682 199980;199981;199982 199981 3 VPFSPGPAPPPHMGELDQER ESFQPLGDIMKMWGRVPFSPGPAPPPHMGE GPAPPPHMGELDQERLTRQQELTALYQMQH R V P E R L 1 1 0 1 0 1 2 2 1 0 1 0 1 1 6 1 0 0 0 1 0 0 20 0 2157.0313 Q6Y7W6;I1E4Y6;E7ESB6;C9JHW1 Q6Y7W6 590 609 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 yes no 3 1.4296E-07 57.009 By MS/MS 1 0.39046 0.36738 NaN 1 Median 0.39046 0.36738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8721300 6343700 2377600 8721300 6343700 2377600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37112 3192 39014 196683 199983 199983 1 VPGATMLLAK AMVCGNTFLMKPSERVPGATMLLAKLLQDS KPSERVPGATMLLAKLLQDSGAPDGTLNII R V P A K L 2 0 0 0 0 0 0 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 10 0 999.57869 Q02252 Q02252 214 223 ALDH6A1 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial yes yes 2 0.0094773 45.161 By MS/MS 1 0.91505 0.85267 NaN 1 Median 0.91505 0.85267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9408300 4479600 4928700 9408300 4479600 4928700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37113 2697 39015 196684 199984 199984 1 VPGISSIEQGMTGLK ITDGQAGFGNDTLSKVPGISSIEQGMTGLK VPGISSIEQGMTGLKIGGDLTAAVTKTVGT K V P L K I 0 0 0 0 0 1 1 3 0 2 1 1 1 0 1 2 1 0 0 1 0 0 15 0 1515.7967 A0A024R7W5;A0A087X0Q1;A0A087WY31;Q7Z739 A0A024R7W5 130 144 YTHDF3 YTH domain-containing family protein 3 yes no 2 0.011106 56.225 By MS/MS 1 0.63936 0.61362 NaN 1 Median 0.63936 0.61362 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4345200 2545600 1799600 4345200 2545600 1799600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37114 6 39016 196685 199985 199985 0 VPGLPTPIENMILR LSEAWRCWKANIPWKVPGLPTPIENMILRY KVPGLPTPIENMILRYVKAKADWWTNTAHY K V P L R Y 0 1 1 0 0 0 1 1 0 2 2 0 1 0 3 0 1 0 0 1 0 0 14 0 1548.8698 Q6P2Q9;I3L0J9 Q6P2Q9 728 741 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 3.5493E-06 124.67 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 3 1 3 0.67175 0.6533 9.699 10 Median 0.67938 0.6653 5.7538 2 0 Median 0.71569 0.58242 NaN 1 0 Median 0.58792 0.64085 10.672 3 0 Plateau 0.83888 0.73756 NaN 1 0 Median 0.66772 0.69061 3.0769 3 0 Median NaN NaN NaN 0 0 Median 62178000 37299000 24879000 8731400 4820000 3911500 9785800 5758900 4026900 29847000 18900000 10948000 3335700 1759300 1576500 10478000 6061100 4416500 0 0 0 37115 3157 39017 196686;196687;196688;196689;196690;196691;196692;196693;196694;196695 199986;199987;199988;199989;199990;199991;199992;199993;199994;199995 199992 10 VPGLYVIDSIVR QSVEKFIQKCKPEYKVPGLYVIDSIVRQSR EYKVPGLYVIDSIVRQSRHQFGQEKDVFAP K V P V R Q 0 1 0 1 0 0 0 1 0 2 1 0 0 0 1 1 0 0 1 3 0 0 12 0 1329.7656 A0A0A0MT33;Q9UPN6;O95104 A0A0A0MT33 138 149 SCAF8;SCAF4 Protein SCAF8;Splicing factor, arginine/serine-rich 15 no no 2 0.00060398 70.1 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 2 3 1 1 1 0.88256 0.82937 26.135 11 Median 0.81717 0.8132 16.644 3 0 Median 0.81566 0.73623 5.2959 2 0 Median 1.0838 1.1478 26.511 3 0 Median 0.9518 0.83287 NaN 1 0 Median 0.98739 1.036 NaN 1 0 Median 0.98996 0.77027 NaN 1 0 Median 15135000 7821700 7313400 2968800 1620300 1348500 709090 460080 249010 8354300 4331400 4022900 422480 198180 224310 2376800 1057100 1319700 303560 154630 148940 37116 186;1745 39018 196696;196697;196698;196699;196700;196701;196702;196703;196704;196705;196706 199996;199997;199998;199999;200000;200001 199998 6 VPGNFHVSTHSATAQPQNPDMTHVIHK NGAGCRFEGQFSINKVPGNFHVSTHSATAQ TAQPQNPDMTHVIHKLSFGDTLQVQNIHGA K V P H K L 2 0 2 1 0 2 0 1 4 1 0 1 1 1 3 2 3 0 0 3 0 0 27 0 2949.4304 Q969X5 Q969X5 126 152 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 5 0.071996 2.0568 By MS/MS 1 0.97622 0.91052 NaN 1 Median 0.97622 0.91052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8294600 4229600 4064900 8294600 4229600 4064900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37117 3590 39019 196707 200002 200002 1 VPGVTDCVAEIQK VPEDEWQCEVCVAHKVPGVTDCVAEIQKNK HKVPGVTDCVAEIQKNKPYIRHEPIGYDRS K V P Q K N 1 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1414.7126 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 439 451 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00018296 82.029 By MS/MS 1 0.66045 0.70756 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66045 0.70756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8020500 4626500 3394000 0 0 0 0 0 0 8020500 4626500 3394000 0 0 0 0 0 0 0 0 0 37118 2762 39020 196708 200003 200003 1 VPHLIDHQISSGENTR NVFNAPTKQAEPEEKVPHLIDHQISSGENT PHLIDHQISSGENTRSVIPNDISSNAAILG K V P T R S 0 1 1 1 0 1 1 1 2 2 1 0 0 0 1 2 1 0 0 1 0 0 16 0 1801.9071 A0A0A0MT33;Q9UPN6 A0A0A0MT33 848 863 SCAF8 Protein SCAF8 yes no 3 0.025254 16.88 By matching By MS/MS 1 2 1.2812 1.0941 24.464 3 Plateau NaN NaN NaN 0 0 Median 1.285 1.1036 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84896 0.73542 9.9416 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4380000 2347100 2032900 0 0 0 1856300 953680 902640 0 0 0 2523700 1393400 1130300 0 0 0 0 0 0 37119 186 39021 196709;196710;196711 200004;200005;200006 200005 3 VPHNINFR DSQLGQGNLKVRFKKVPHNINFREKKPKPS LKVRFKKVPHNINFREKKPKPSKKKAEGGG K V P F R E 0 1 2 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 8 0 995.5301 Q10570 Q10570 895 902 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.039331 37.021 By MS/MS 1 0.65667 0.73952 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65667 0.73952 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1316800 798680 518090 0 0 0 0 0 0 1316800 798680 518090 0 0 0 0 0 0 0 0 0 37120 2753 39022 196712 200007 200007 1 VPHSLDLSSPNMANTVNAALKPLETLSR IRLFLKKGLVNDLARVPHSLDLSSPNMANT NTVNAALKPLETLSRIVNQPSSLFGSKSAS R V P S R I 3 1 3 1 0 0 1 0 1 0 5 1 1 0 3 4 2 0 0 2 0 0 28 1 2974.5546 Q7Z6Z7 Q7Z6Z7 2228 2255 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 4 2.9039E-12 59.691 By MS/MS 1 0.89773 0.82924 NaN 1 Median NaN NaN NaN 0 0 Median 0.89773 0.82924 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16869000 8959300 7910200 0 0 0 16869000 8959300 7910200 0 0 0 0 0 0 0 0 0 0 0 0 37121 3253 39023 196713 200008 200008 0 VPIDGPPIDIGR PMHGVPCPAGAAVCKVPIDGPPIDIGRVAG VCKVPIDGPPIDIGRVAGPPILNPIANEIY K V P G R V 0 1 0 2 0 0 0 2 0 3 0 0 0 0 3 0 0 0 0 1 0 0 12 0 1247.6874 P11717 P11717 1715 1726 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 4.1172E-06 112.75 By MS/MS By MS/MS By matching By matching By matching By MS/MS 3 5 1 1 1 2 1.2163 1.0678 49.892 13 Median 0.62113 0.58516 37.446 3 1 Median 1.1433 0.97123 27.046 5 1 Median 1.5182 1.4733 NaN 1 0 Median 1.2898 1.1077 NaN 1 0 Median 2.5773 2.5901 NaN 1 0 Median 2.3077 1.9289 23.672 2 0 Median 143150000 66753000 76396000 60518000 29268000 31250000 61248000 29194000 32054000 14732000 5986000 8745900 1013600 428410 585220 3606100 1168200 2437900 2031200 708110 1323100 37122 1969 39024 196714;196715;196716;196717;196718;196719;196720;196721;196722;196723;196724;196725;196726 200009;200010;200011;200012;200013;200014;200015;200016;200017;200018 200010 10 VPIIGVGGVSSGQDALEK STQTIREMYALTQGRVPIIGVGGVSSGQDA IGVGGVSSGQDALEKIRAGASLVQLYTALT R V P E K I 1 0 0 1 0 1 1 4 0 2 1 1 0 0 1 2 0 0 0 3 0 0 18 0 1724.9309 Q02127 Q02127 327 344 DHODH Dihydroorotate dehydrogenase (quinone), mitochondrial yes yes 2 5.0755E-06 64.55 By MS/MS By matching By matching 1 1 1 0.93339 1.0418 19.797 3 Median 0.7937 0.74094 NaN 1 0 Median 1.2195 1.0462 NaN 1 0 Median 0.93339 1.0418 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6641400 3744300 2897200 5006500 2866800 2139700 216430 94217 122210 1418500 783260 635220 0 0 0 0 0 0 0 0 0 37123 2696 39025 196727;196728;196729 200019;200020 200020 2 VPIIVPIMMLAIK QLIRASALRVLSSIRVPIIVPIMMLAIKEA IRVPIIVPIMMLAIKEASADLSPYVRKNAA R V P I K E 1 0 0 0 0 0 0 0 0 4 1 1 2 0 2 0 0 0 0 2 0 0 13 0 1436.8863 O00203;A0A590UJU0;A0A590UJ60;A0A590UK04;A0A2R8Y2A8;A0A590UKC4;Q13367;A0A590UJW5;A0A590UKD3;F5GWU4 O00203 144 156 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 2 0.0064921 38.086 By matching By MS/MS By matching 2 1 1 0.87355 0.82145 49.29 4 Median 0.7063 0.70397 3.4197 2 0 Median NaN NaN NaN 0 0 Median 1.8744 1.9969 NaN 1 0 Median 1.0768 0.93563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1988200 896480 1091700 851130 488090 363040 0 0 0 962690 321000 641700 174330 87392 86940 0 0 0 0 0 0 37124 1447 39026 196730;196731;196732;196733 200021 200021 1 VPINDVLAEDK AAKVRLKMPPVLEERVPINDVLAEDKILEG LEERVPINDVLAEDKILEGTETTKYVFTDI R V P D K I 1 0 1 2 0 0 1 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1211.6398 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3 G5E9W7 95 105 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2 0.0019123 56.404 By MS/MS By matching 1 1 0.95152 0.84914 17.737 2 Median 0.80225 0.74905 NaN 1 0 Median 1.1286 0.96261 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6413800 3114400 3299400 5249500 2602600 2646800 1164300 511720 652610 0 0 0 0 0 0 0 0 0 0 0 0 37125 1130 39027 196734;196735 200022 200022 1 VPINDVLAEDKILEGTETTK AAKVRLKMPPVLEERVPINDVLAEDKILEG VLAEDKILEGTETTKYVFTDISYSIPHRER R V P T K Y 1 0 1 2 0 0 3 1 0 2 2 2 0 0 1 0 3 0 0 2 0 0 20 1 2184.1525 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3 G5E9W7 95 114 MRPS22 28S ribosomal protein S22, mitochondrial yes no 3 7.0717E-09 77.391 By MS/MS By matching By matching 1 1 1 0.9375 0.98606 14.758 3 Median 0.88094 0.82006 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.233 1.0979 NaN 1 0 Median 0.9375 0.98606 NaN 1 0 Median NaN NaN NaN 0 0 Median 9795100 4941500 4853700 8377800 4194100 4183700 0 0 0 0 0 0 400870 201860 199010 1016500 545490 471000 0 0 0 37126 1130 39028 196736;196737;196738 200023;200024 200024 2 VPINESFISMVIGR GAKRPSNYPESYFQRVPINESFISMVIGRL RVPINESFISMVIGRLRSDDIYNQVSAYPL R V P G R L 0 1 1 0 0 0 1 1 0 3 0 0 1 1 1 2 0 0 0 2 0 0 14 0 1560.8334 Q12768;E7EQI7;E5RFU6 Q12768 215 228 KIAA0196 WASH complex subunit strumpellin yes no 2 0.011438 33.229 By MS/MS By MS/MS 1 1 0.83966 0.87423 5.6833 2 Median 0.83888 0.8398 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84045 0.91008 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2665500 1291900 1373600 1391100 748010 643090 0 0 0 1274400 543890 730540 0 0 0 0 0 0 0 0 0 37127 878 39029 196739;196740 200025;200026 200026 2 VPIPAPNEVLNDR KPIPAQFQQAWMQNKVPIPAPNEVLNDRKE NKVPIPAPNEVLNDRKEDIKLEEKKKTQAE K V P D R K 1 1 2 1 0 0 1 0 0 1 1 0 0 0 3 0 0 0 0 2 0 0 13 0 1432.7674 Q9C0J8 Q9C0J8 513 525 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 2 3.3165E-05 91.855 By MS/MS 1 0.53852 0.59215 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53852 0.59215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11054000 7202500 3851500 0 0 0 0 0 0 11054000 7202500 3851500 0 0 0 0 0 0 0 0 0 37128 3907 39030 196741 200027 200027 1 VPIPQVTR SGMNLNPEVEGTLIRVPIPQVTREHREMLV VEGTLIRVPIPQVTREHREMLVKLAKQNTN R V P T R E 0 1 0 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 2 0 0 8 0 908.54435 Q96E11 Q96E11 180 187 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 0.0035928 86.794 By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 0.92486 0.82663 15.339 4 Median 0.7724 0.72922 NaN 1 0 Median 1.1881 1.0094 NaN 1 0 Median 0.78638 0.75516 NaN 1 0 Median 1.0877 0.90487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47618000 25827000 21792000 5461600 2965100 2496500 1703500 677540 1025900 30146000 17314000 12832000 10308000 4870100 5437500 0 0 0 0 0 0 37129 3631 39031 196742;196743;196744;196745 200028;200029;200030;200031;200032;200033;200034;200035;200036 200030 9 VPIPVKESIEEPSAK VREEEKLELQKLLERVPIPVKESIEEPSAK VPIPVKESIEEPSAKINVLLQAFISQLKLE R V P A K I 1 0 0 0 0 0 3 0 0 2 0 2 0 0 3 2 0 0 0 2 0 0 15 1 1621.8927 O75643;A0A494C1A5 O75643 1044 1058 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 1.0279E-09 98.943 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 1 1 0.60602 0.60101 31.364 8 Median 0.65347 0.6701 25.82 2 0 Median NaN NaN NaN 0 0 Median 0.51309 0.59811 20.779 3 0 Plateau 0.63841 0.60023 NaN 1 0 Median 0.718 0.77158 NaN 1 0 Median 1.2259 1.1105 NaN 1 0 Median 109860000 70881000 38974000 12326000 7431000 4895000 0 0 0 86901000 57107000 29793000 3391200 2139600 1251600 6538300 3866000 2672300 699000 337510 361500 37130 1688 39032 196746;196747;196748;196749;196750;196751;196752;196753 200037;200038;200039;200040;200041;200042;200043;200044;200045 200039 9 VPITAVIAAK CGYDIASPNAGPLFRVPITAVIAAKVNESS GPLFRVPITAVIAAKVNESSHYDLAFTDVH R V P A K V 3 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 0 2 0 0 10 0 981.62227 A0A494C0U1;Q5VZU9;P29144;A0A494C1B8 A0A494C0U1 625 634 TPP2 Tripeptidyl-peptidase 2 yes no 2 0.00083236 70.919 By MS/MS By matching 1 1 0.96194 0.87916 3.1646 2 Median 0.92449 0.89905 NaN 1 0 Median 1.0009 0.8597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10742000 5284700 5457600 6518300 3251700 3266600 4224100 2033000 2191000 0 0 0 0 0 0 0 0 0 0 0 0 37131 461 39033 196754;196755 200046;200047 200047 2 VPIYFSTGLTEK LCILLETFWERMNLKVPIYFSTGLTEKANH NLKVPIYFSTGLTEKANHYYKLFIPWTNQK K V P E K A 0 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 2 0 1 1 0 0 12 0 1353.718 C9J979;Q5TA45;Q96HV7;C9IYS7;A0A087WYI0;J3QRY6 C9J979 293 304 CPSF3L Integrator complex subunit 11 yes no 2 0.00059476 72.006 By MS/MS 1 0.9028 0.90843 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9028 0.90843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4751000 2254500 2496500 0 0 0 0 0 0 4751000 2254500 2496500 0 0 0 0 0 0 0 0 0 37132 681 39034 196756 200048 200048 1 VPLAFAMVK KLVKSKVVNDEEVVRVPLAFAMVKLMQSLP DEEVVRVPLAFAMVKLMQSLPQEVMEANLP R V P V K L 2 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 2 0 0 9 0 974.56231 O75691 O75691 1821 1829 UTP20 Small subunit processome component 20 homolog yes yes 2 0.006834 53.351 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 2 2 1 1 1.084 1.0447 9.2756 8 Median 0.89641 0.90283 NaN 1 0 Median 1.1639 1.0271 NaN 1 0 Median 1.0665 1.1724 2.7889 2 0 Median 1.1618 1.0648 6.7583 2 0 Median 1.0046 1.0626 NaN 1 0 Median 1.1143 0.96713 NaN 1 0 Median 13334000 6275800 7058100 1455400 727930 727460 739100 358570 380530 8028500 3693000 4335500 651130 301270 349870 2280500 1111000 1169500 179220 83991 95232 37133 1691 39035 196757;196758;196759;196760;196761;196762;196763;196764 200049;200050;200051;200052;200053 200049 5 VPLAGAAGGPGIGR MTVEGPPPKDTGIARVPLAGAAGGPGIGRA RVPLAGAAGGPGIGRAAGRGIPAGVPMPQA R V P G R A 3 1 0 0 0 0 0 5 0 1 1 0 0 0 2 0 0 0 0 1 0 0 14 0 1191.6724 P14678 P14678 95 108 SNRPB Small nuclear ribonucleoprotein-associated proteins B and B yes yes 2 0.0010085 52.278 By MS/MS By matching By matching By matching 1 1 1 1 0.77705 0.70473 32.175 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69151 0.66296 NaN 1 0 Median 0.87317 0.74913 NaN 1 0 Median 1.0268 1.0145 NaN 1 0 Median 0.57413 0.46607 NaN 1 0 Median 12457000 6358600 6098300 0 0 0 0 0 0 5397600 3197600 2200100 2348200 892100 1456100 3119300 1481700 1637600 1591900 787320 804530 37134 2009 39036 196765;196766;196767;196768 200054 200054 1 VPLAIVNK TLSKEVRNLKWLGFRVPLAIVNKAHQANQL LKWLGFRVPLAIVNKAHQANQLYPFAISLI R V P N K A 1 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 8 0 852.54329 Q14204 Q14204 760 767 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0023085 119.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 2 2 1.3104 1.2525 31.741 9 Median 1.0706 1.0485 25.137 2 0 Median 1.3166 1.1683 31.458 2 0 Median 0.87414 0.93024 NaN 1 0 Median 1.6982 1.6082 60.117 2 0 Median NaN NaN NaN 0 0 Median 1.5238 1.2881 2.6732 2 0 Median 159500000 80021000 79479000 31449000 15743000 15706000 63529000 32114000 31415000 50238000 25895000 24343000 8727200 4059400 4667800 0 0 0 5556100 2208900 3347100 37135 2865 39037 196769;196770;196771;196772;196773;196774;196775;196776;196777 200055;200056;200057;200058;200059;200060;200061;200062;200063 200057 9 VPLALFALNR AATGPSFWLGNETLKVPLALFALNRQRLCE NETLKVPLALFALNRQRLCERLRKNPAVQA K V P N R Q 2 1 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 10 0 1112.6706 A0A494C194;K7ES25;A0A494C165;P12955 A0A494C194 18 27 PEPD Xaa-Pro dipeptidase yes no 2 0.022594 36.395 By MS/MS By matching By matching 2 1 1 0.96745 0.87842 96.96 4 Median 0.37999 0.36359 134.57 2 0 Median 0.97181 0.81949 NaN 1 0 Median 1.1819 1.1392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14712000 7501700 7210700 6890600 3941000 2949500 7429800 3398800 4031000 391990 161850 230140 0 0 0 0 0 0 0 0 0 37136 465 39038 196778;196779;196780;196781 200064 200064 1 VPLAPITDPQQLQLSPLK ______________________________ APITDPQQLQLSPLKGLSLVDKENTPPALS R V P L K G 1 0 0 1 0 3 0 0 0 1 4 1 0 0 4 1 1 0 0 1 0 0 18 0 1957.1248 P31350;A0A286YFD6 P31350 6 23 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 0.0031207 31.228 By MS/MS By MS/MS 1 1 0.63696 0.62482 12.885 2 Median NaN NaN NaN 0 0 Median 0.66174 0.57041 NaN 1 0 Median 0.61311 0.68442 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3357100 2021700 1335400 0 0 0 1848200 1097500 750680 1508900 924200 584720 0 0 0 0 0 0 0 0 0 37137 2203 39039 196782;196783 200065;200066 200065 2 VPLDEALQR QYLTGGLIEPDTPGRVPLDEALQRGTVDAR PDTPGRVPLDEALQRGTVDARTAQKLRDVG R V P Q R G 1 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 9 0 1039.5662 Q15149;H0YDN1 Q15149 4543 4551 PLEC Plectin yes no 2 0.00082366 95.909 By matching By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 2 1.0169 0.89956 62.485 7 Median 0.96246 0.89956 NaN 1 0 Median 0.58896 0.52939 71.4 2 0 Median 0.90928 0.96945 NaN 1 0 Median 1.0169 0.88587 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.3971 1.9977 20.56 2 0 Median 52775000 24401000 28374000 7057300 2920700 4136600 27555000 13941000 13614000 6469200 3296800 3172400 4049600 2010100 2039500 0 0 0 7644300 2232500 5411800 37138 2933 39040 196784;196785;196786;196787;196788;196789;196790 200067;200068;200069;200070 200067 4 VPLDLSPR SSDQEEGETSAQTERVPLDLSPRLEETLDF TSAQTERVPLDLSPRLEETLDFGEVEVEPS R V P P R L 0 1 0 1 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 8 0 895.51272 Q9UKV5;R4GNG2 Q9UKV5 537 544 AMFR E3 ubiquitin-protein ligase AMFR yes no 2 0.011435 75.311 By MS/MS By MS/MS By MS/MS By MS/MS 3 7 2 3 0.47136 0.41315 293.76 14 Median 0.40264 0.39317 390.44 3 3 Median NaN NaN NaN 0 0 Median 0.36316 0.35298 327.33 6 6 Median 0.050502 0.038068 344.22 2 2 Median 1.2209 1.2297 187.42 3 3 Median NaN NaN NaN 0 0 Median 341560000 116350000 225210000 57252000 14694000 42557000 0 0 0 230630000 65583000 165050000 8500700 7940900 559760 45179000 28137000 17042000 0 0 0 37139 4316 39041 196791;196792;196793;196794;196795;196796;196797;196798;196799;196800;196801;196802;196803;196804;196805 200071;200072;200073;200074;200075;200076;200077;200078;200079;200080;200081;200082;200083;200084;200085;200086;200087;200088;200089;200090 200085 20 VPLDPLIGK AELMCQDLEVPLLGRVPLDPLIGKNCDKGQ VPLLGRVPLDPLIGKNCDKGQSFFIDAPDS R V P G K N 0 0 0 1 0 0 0 1 0 1 2 1 0 0 2 0 0 0 0 1 0 0 9 0 950.58007 P53384 P53384 267 275 NUBP1 Cytosolic Fe-S cluster assembly factor NUBP1 yes yes 2 0.011663 47.082 By MS/MS By matching 2 1 0.72493 0.66275 15.131 3 Median 0.63863 0.5919 15.988 2 0 Median 0.83841 0.70453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22106000 12887000 9218300 18757000 11152000 7605000 3349000 1735600 1613300 0 0 0 0 0 0 0 0 0 0 0 0 37140 2466 39042 196806;196807;196808 200091;200092 200092 2 VPLDVACAR QLSTGGIVDPSKSHRVPLDVACARGCLDEE PSKSHRVPLDVACARGCLDEETSRALSAPR R V P A R G 2 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 9 0 999.51715 Q15149;H0YDN1 Q15149 3289 3297 PLEC Plectin yes no 2 0.00093491 89.752 By MS/MS 1 1.057 0.85775 NaN 1 Median NaN NaN NaN 0 0 Median 1.057 0.85775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10706000 4308100 6398000 0 0 0 10706000 4308100 6398000 0 0 0 0 0 0 0 0 0 0 0 0 37141 2933 39043 196809 200093;200094 200093 2 VPLEVQEADEAK QRLRERRAASGYPVKVPLEVQEADEAKLQQ PVKVPLEVQEADEAKLQQTEAELRKVDEAI K V P A K L 2 0 0 1 0 1 3 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1326.6667 P26640;A0A140T936 P26640 1231 1242 VARS Valine--tRNA ligase yes no 2 2.2603E-09 171.62 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1.0882 0.94056 16.606 5 Median NaN NaN NaN 0 0 Median 1.1298 0.9668 3.8901 2 1 Median 0.73756 0.7993 NaN 1 0 Median 0.90578 0.81398 26.55 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40853000 20241000 20611000 0 0 0 10916000 5464400 5451900 5096000 3171400 1924600 24841000 11606000 13235000 0 0 0 0 0 0 37142 2148 39044 196810;196811;196812;196813;196814;196815 200095;200096;200097;200098;200099 200099 4 VPLEVQEADEAKLQQTEAELR QRLRERRAASGYPVKVPLEVQEADEAKLQQ EADEAKLQQTEAELRKVDEAIALFQKML__ K V P L R K 3 1 0 1 0 3 5 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 21 1 2395.2231 P26640;A0A140T936 P26640 1231 1251 VARS Valine--tRNA ligase yes no 3 0.0003678 29.126 By matching By MS/MS 1 1 1.0734 1.1635 16.341 2 Median 0.99921 1.0366 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.153 1.306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7777800 4012400 3765500 2227000 782220 1444800 0 0 0 5550800 3230200 2320700 0 0 0 0 0 0 0 0 0 37143 2148 39045 196816;196817 200100 200100 1 VPLFSPNFSEK AEFIMLNHFSQRYAKVPLFSPNFSEKVGVA RYAKVPLFSPNFSEKVGVAFDHMKVCFGDF K V P E K V 0 0 1 0 0 0 1 0 0 0 1 1 0 2 2 2 0 0 0 1 0 0 11 0 1263.6499 Q9BQ52;G5E9D5;E7ES68 Q9BQ52 732 742 ELAC2 Zinc phosphodiesterase ELAC protein 2 yes no 2 0.0013674 59.426 By MS/MS By matching 1 1 0.91736 0.82479 23.311 2 Median 0.76456 0.69945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1007 0.97259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8780800 4702600 4078200 8476900 4557200 3919700 0 0 0 0 0 0 303910 145400 158510 0 0 0 0 0 0 37144 3782 39046 196818;196819 200101;200102 200102 2 VPLHKPTDWQK KPQESPGAPSRTYNRVPLHKPTDWQKKILI TYNRVPLHKPTDWQKKILIWSGRFKKEDEI R V P Q K K 0 0 0 1 0 1 0 0 1 0 1 2 0 0 2 0 1 1 0 1 0 0 11 1 1347.7299 Q96A26;F8W7Q4;E9PH05 Q96A26 58 68 FAM162A Protein FAM162A yes no 2;3 4.9119E-05 89.548 By matching By MS/MS By MS/MS 3 3 2 0.80122 0.80409 16.788 8 Median 0.81516 0.81498 9.0592 3 0 Plateau 1.123 0.97353 6.4397 3 0 Median 0.70421 0.71712 0.25575 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43025000 20768000 22257000 11078000 5969000 5108800 21583000 9296400 12287000 10364000 5502600 4861800 0 0 0 0 0 0 0 0 0 37145 1085 39047 196820;196821;196822;196823;196824;196825;196826;196827 200103;200104;200105;200106;200107;200108 200107 6 VPLHQVPYAVK ETELTDQAWLPAGVRVPLHQVPYAVKGCFR AGVRVPLHQVPYAVKGCFRFLPPAQVTVVG R V P V K G 1 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 0 1 3 0 0 11 0 1249.7183 Q9H6R4;A0A0A0MRW6 Q9H6R4 139 149 NOL6 Nucleolar protein 6 yes no 2;3 0.00014307 117.04 By matching By MS/MS By matching By MS/MS By matching 1 3 1 1 2 0.81621 0.85334 31.587 8 Median NaN NaN NaN 0 0 Median 0.77268 0.68 NaN 1 0 Median 0.87822 0.93742 29.734 3 0 Median 1.1911 1.0068 NaN 1 0 Median 0.79057 0.80819 NaN 1 0 Median 0.71805 0.59859 9.2288 2 0 Median 43143000 23509000 19634000 0 0 0 1753500 1085700 667800 27544000 14826000 12719000 1764300 763480 1000800 10572000 6002400 4569500 1508800 831890 676940 37146 3976 39048 196828;196829;196830;196831;196832;196833;196834;196835 200109;200110;200111;200112;200113 200109 5 VPLILVGNK KPMRDQIVRVKRYEKVPLILVGNKVDLEPE VKRYEKVPLILVGNKVDLEPEREVMSSEGR K V P N K V 0 0 1 0 0 0 0 1 0 1 2 1 0 0 1 0 0 0 0 2 0 0 9 0 951.6117 Q9Y3L5;A0A087X2C3 Q9Y3L5 109 117 RAP2C Ras-related protein Rap-2c yes no 2 0.0013673 82.305 By MS/MS By matching By matching By matching By matching 3 2 1 3 1 0.98217 0.88203 18.031 10 Median 0.83977 0.78684 10.086 3 0 Median 1.1689 0.99 16.153 2 0 Median 0.76952 0.75041 NaN 1 0 Median 1.1508 0.98459 10.167 3 0 Median 0.63762 0.65377 NaN 1 0 Median NaN NaN NaN 0 0 Median 50816000 26481000 24335000 31088000 16629000 14459000 9860000 4475100 5385000 1153400 613730 539670 4308200 2066500 2241700 4406200 2696500 1709700 0 0 0 37147 4431 39049 196836;196837;196838;196839;196840;196841;196842;196843;196844;196845 200114;200115 200114 2 VPLKVEQANNAR VMLTTAGGTKGTVIKVPLKVEQANNARDAL VIKVPLKVEQANNARDALAKTVYSHLFDHV K V P A R D 2 1 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 12 1 1337.7415 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 409 420 MYO6 Unconventional myosin-VI yes no 3 2.1732E-05 93.839 By MS/MS By MS/MS 2 1 1.437 1.374 24.75 3 Plateau 0.90793 0.93463 10.39 2 0 Median 1.4938 1.4074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4420200 1987800 2432400 1051700 532250 519420 3368600 1455600 1913000 0 0 0 0 0 0 0 0 0 0 0 0 37148 164 39050 196846;196847;196848 200116;200117 200117 2 VPLLLEEQGVVDYFLR PEQVICVHDVSSIYRVPLLLEEQGVVDYFL PLLLEEQGVVDYFLRRLDLPIERQPRKMLM R V P L R R 0 1 0 1 0 1 2 1 0 0 4 0 0 1 1 0 0 0 1 3 0 0 16 0 1889.0299 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8 P17812 253 268 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.032329 24.291 By MS/MS 1 1.0293 0.88787 NaN 1 Median NaN NaN NaN 0 0 Median 1.0293 0.88787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1460600 715340 745220 0 0 0 1460600 715340 745220 0 0 0 0 0 0 0 0 0 0 0 0 37149 2046 39051 196849 200118 200118 1 VPLPSLSPTMQAGTIAR GSPGRRYYSLPPHQKVPLPSLSPTMQAGTI LPSLSPTMQAGTIARWEKKEGDKINEGDLI K V P A R W 2 1 0 0 0 1 0 1 0 1 2 0 1 0 3 2 2 0 0 1 0 0 17 0 1737.9447 P10515;H0YDD4;E9PEJ4 P10515 94 110 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 1.821E-13 114.82 By MS/MS By matching 1 1 0.77545 0.70221 28.934 2 Median 0.60573 0.57228 NaN 1 0 Median 0.99274 0.86163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24909000 14888000 10021000 21746000 13381000 8365200 3163200 1507400 1655700 0 0 0 0 0 0 0 0 0 0 0 0 37150 1938 39052 196850;196851 200119;200120;200121 200120 3 VPLQGFAALEGMNGIQK ADRAKFLQFVTGTSKVPLQGFAALEGMNGI LQGFAALEGMNGIQKFQIHRDDRSTDRLPS K V P Q K F 2 0 1 0 0 2 1 3 0 1 2 1 1 1 1 0 0 0 0 1 0 0 17 0 1771.9291 Q7Z6Z7;H0Y659 Q7Z6Z7 4306 4322 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes no 2 0.0042988 31.843 By MS/MS 2 0.58924 0.58004 46.47 2 Median 0.58924 0.58004 46.47 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35731000 21593000 14138000 35731000 21593000 14138000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37151 3253 39053 196852;196853 200122;200123 200123 2 VPLSAYER RMAPALSGANLTSPRVPLSAYERVSGRTSP ANLTSPRVPLSAYERVSGRTSPPLLDRARS R V P E R V 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 933.49198 Q9UQ35 Q9UQ35 2385 2392 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.011309 57.177 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0057 1.0505 20.181 4 Median 0.76971 0.74253 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90995 0.97528 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1116 1.1464 NaN 1 0 Median 1.314 1.1315 NaN 1 0 Median 20675000 9109300 11565000 6910800 2913500 3997300 0 0 0 2617600 1496800 1120900 0 0 0 7321500 2852700 4468900 3824700 1846300 1978400 37152 4359 39054 196854;196855;196856;196857 200124;200125;200126 200124 3 VPLSEFDFSWSK RPEELGFLRYLKQSKVPLSEFDFSWSKISD QSKVPLSEFDFSWSKISDIQSQLEKLIEKN K V P S K I 0 0 0 1 0 0 1 0 0 0 1 1 0 2 1 3 0 1 0 1 0 0 12 0 1440.6925 Q9NVP1 Q9NVP1 546 557 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00052736 76.143 By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 0.98885 0.92282 9.9712 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98885 0.99008 NaN 1 0 Median 0.85717 0.85156 11.365 2 0 Median 0.98885 1.0109 NaN 1 0 Median 1.067 0.89669 NaN 1 0 Median 32751000 16207000 16544000 0 0 0 0 0 0 19823000 9907700 9914900 191860 89380 102480 10503000 5227200 5275400 2233700 982480 1251200 37153 4137 39055 196858;196859;196860;196861;196862 200127;200128;200129;200130;200131;200132 200127 6 VPLTVDEIASFGEGSR DSEICLLKSGELMIKVPLTVDEIASFGEGS PLTVDEIASFGEGSRELFVRSSTYSLIPIT K V P S R E 1 1 0 1 0 0 2 2 0 1 1 0 0 1 1 2 1 0 0 2 0 0 16 0 1675.8417 Q9BQS8;C9J2W6;H7BZ74 Q9BQS8 1350 1365 FYCO1 FYVE and coiled-coil domain-containing protein 1 yes no 2 0.00013003 64.55 By MS/MS 1 0.74055 0.73346 NaN 1 Median 0.74055 0.73346 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2686900 1206600 1480300 2686900 1206600 1480300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37154 3791 39056 196863 200133 200133 1 VPLVAEKPLKEPK DRSCYDLSCHARATKVPLVAEKPLKEPKTV TKVPLVAEKPLKEPKTVNVVQFEPSKGAIG K V P P K T 1 0 0 0 0 0 2 0 0 0 2 3 0 0 3 0 0 0 0 2 0 0 13 2 1446.881 P41250 P41250 478 490 GARS Glycine--tRNA ligase yes yes 3 0.00028683 63.181 By MS/MS By MS/MS By matching By MS/MS 1 3 1 1 0.67551 0.66909 15.714 6 Median 0.70292 0.68681 NaN 1 0 Median 0.64917 0.63338 13.824 3 0 Median 0.5638 0.65182 NaN 1 0 Median 0.83218 0.88278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22607000 13552000 9054300 6239000 3688600 2550400 13224000 7898600 5325000 2609700 1644700 964970 534380 320460 213920 0 0 0 0 0 0 37155 2301 39057 196864;196865;196866;196867;196868;196869 200134;200135;200136;200137;200138 200136 5 VPLVAPEDLR NHIHTGHHSSMFWMRVPLVAPEDLRDDIIE MFWMRVPLVAPEDLRDDIIENAPTTHTEEY R V P L R D 1 1 0 1 0 0 1 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 10 0 1107.6288 O14744;H0YJX6;G3V580;G3V5L5;G3V2X6;C9JSX3 O14744 155 164 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.0004183 92.439 By MS/MS By MS/MS 1 1 0.86689 0.78752 9.5283 2 Median 0.88337 0.84241 NaN 1 0 Median 0.85072 0.73621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17192000 8950500 8241700 9992400 5160700 4831700 7199700 3789700 3410000 0 0 0 0 0 0 0 0 0 0 0 0 37156 1492 39058 196870;196871 200139;200140;200141;200142 200139 4 VPLYTQK VHSRDHGLEVLGLVRVPLYTQKDRVGGFPN LEVLGLVRVPLYTQKDRVGGFPNFLSNAFV R V P Q K D 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 7 0 847.48035 Q9BRJ7;K7EIN2 Q9BRJ7 145 151 NUDT16L1 Protein syndesmos yes no 2 0.054605 50.898 By MS/MS 1 1.0807 1.0145 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0807 1.0145 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8857000 4340800 4516300 0 0 0 0 0 0 8857000 4340800 4516300 0 0 0 0 0 0 0 0 0 37157 3796 39059 196872 200143 200143 1 VPMADKPGNTVNFR SVAYANMCRCLVTLKVPMADKPGNTVNFRK KVPMADKPGNTVNFRKLLLNRCQKEFEKDK K V P F R K 1 1 2 1 0 0 0 1 0 0 0 1 1 1 2 0 1 0 0 2 0 0 14 1 1544.7769 A0A0U1RQK7;A0A0A0MSA7;O43432 A0A0U1RQK7 1010 1023 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 yes no 3 0.01632 34.302 By MS/MS 1 0.84189 0.80215 NaN 1 Median NaN NaN NaN 0 0 Median 0.84189 0.80215 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2169300 1066800 1102400 0 0 0 2169300 1066800 1102400 0 0 0 0 0 0 0 0 0 0 0 0 37158 300 39060 196873 200144 200144 1 VPMILVGNK KPMRDQIIRVKRYERVPMILVGNKVDLEGE VKRYERVPMILVGNKVDLEGEREVSYGEGK R V P N K V 0 0 1 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 0 2 0 0 9 0 969.56812 P61225 P61225 109 117 RAP2B Ras-related protein Rap-2b yes yes 2 0.035824 34.808 By MS/MS 1 1.3018 1.1196 NaN 1 Median NaN NaN NaN 0 0 Median 1.3018 1.1196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2933200 1136100 1797000 0 0 0 2933200 1136100 1797000 0 0 0 0 0 0 0 0 0 0 0 0 37159 2552 39061 196874 200145 200145 1 VPMSVVNFEKPK EYWCEVTVNGLDTVRVPMSVVNFEKPKTKR TVRVPMSVVNFEKPKTKRYKYWLAQQAAKA R V P P K T 0 0 1 0 0 0 1 0 0 0 0 2 1 1 2 1 0 0 0 3 0 0 12 1 1373.7377 Q9BYD2;Q5SZR1 Q9BYD2 233 244 MRPL9 39S ribosomal protein L9, mitochondrial yes no 2;3 6.744E-05 85.288 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.97861 0.99606 31.636 5 Median 0.93787 0.95371 6.145 2 1 Median 0.94822 0.8895 NaN 1 0 Median 1.0064 1.0044 NaN 1 0 Median 2.1195 1.907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28830000 14027000 14803000 21169000 10675000 10494000 1107900 536390 571560 5167600 2451000 2716600 1385900 365000 1020900 0 0 0 0 0 0 37160 3889 39062 196875;196876;196877;196878;196879 200146;200147;200148;200149;200150 200147 5 VPMVVLQDILAVRPPQIK QDSWSEAGGILFKGKVPMVVLQDILAVRPP VVLQDILAVRPPQIKSLPATPQGKNMTPES K V P I K S 1 1 0 1 0 2 0 0 0 2 2 1 1 0 3 0 0 0 0 4 0 0 18 1 2015.1965 Q13111;K7EPA1 Q13111 237 254 CHAF1A Chromatin assembly factor 1 subunit A yes no 3 0.0069937 24.538 By MS/MS 1 0.60905 0.67778 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60905 0.67778 NaN 1 0 Median NaN NaN NaN 0 0 Median 656050 396810 259240 0 0 0 0 0 0 0 0 0 0 0 0 656050 396810 259240 0 0 0 37161 2785 39063 196880 200151 200151 1 VPNDKYYGAQTVR QNSFRIEYDTFGELKVPNDKYYGAQTVRST LKVPNDKYYGAQTVRSTMNFKIGGVTERMP K V P V R S 1 1 1 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 2 2 0 0 13 1 1509.7576 P07954 P07954 62 74 FH Fumarate hydratase, mitochondrial yes yes 3 0.005306 32.734 By MS/MS By MS/MS 1 1 1.0738 1.0323 12.758 2 Median 0.93301 0.94328 NaN 1 0 Median 1.2359 1.1298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3169200 1588400 1580800 1816900 919470 897480 1352300 668950 683340 0 0 0 0 0 0 0 0 0 0 0 0 37162 1896 39064 196881;196882 200152;200153;200154 200154 3 VPNGGGGGGGLPISTVR RDPHSGHFVALKSVRVPNGGGGGGGLPIST NGGGGGGGLPISTVREVALLRRLEAFEHPN R V P V R E 0 1 1 0 0 0 0 7 0 1 1 0 0 0 2 1 1 0 0 2 0 0 17 0 1493.795 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8;F8VYY1 P11802 39 55 CDK4 Cyclin-dependent kinase 4 yes no 2 4.3088E-11 108.59 By MS/MS By MS/MS By matching 1 1 1 0.83855 0.76533 10.776 3 Median 0.81844 0.76533 NaN 1 0 Median 0.83855 0.69953 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0329 0.86697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33284000 18044000 15240000 28227000 15256000 12971000 4498000 2444600 2053400 0 0 0 559180 343380 215800 0 0 0 0 0 0 37163 1971 39065 196883;196884;196885 200155;200156;200157;200158;200159;200160 200156 6 VPNLPSFK PEIPRNINIGDISIKVPNLPSFK_______ IGDISIKVPNLPSFK_______________ K V P F K - 0 0 1 0 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 8 0 900.5069 Q92572 Q92572 186 193 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.022207 45.081 By MS/MS By matching By matching 1 1 1 0.86035 0.7511 60.233 3 Median 0.79439 0.7511 NaN 1 0 Median 0.86035 0.74208 NaN 1 0 Median 2.2084 2.119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9032900 3754800 5278100 4169200 2077500 2091700 2321100 1180300 1140800 2542700 497020 2045700 0 0 0 0 0 0 0 0 0 37164 3537 39066 196886;196887;196888 200161 200161 1 VPNSNPPEYEFFWGLR ITDEFVKQKYLDYARVPNSNPPEYEFFWGL PNSNPPEYEFFWGLRSYYETSKMKVLKFAC R V P L R S 0 1 2 0 0 0 2 1 0 0 1 0 0 2 3 1 0 1 1 1 0 0 16 0 1950.9264 Q9UNF1;Q5H909;Q5H907 Q9UNF1 431 446 MAGED2 Melanoma-associated antigen D2 yes no 2 0.032633 24.254 By MS/MS By matching By matching 2 1 1 0.75668 0.70697 10.99 4 Median 0.65686 0.6533 17.277 2 0 Median 0.7915 0.70078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8401 0.71321 NaN 1 0 Median 6630600 3667400 2963100 6040000 3362900 2677100 488990 251630 237360 0 0 0 0 0 0 0 0 0 101620 52929 48687 37165 4343 39067 196889;196890;196891;196892 200162 200162 1 VPNSVLWLLR IDPSTLQMWANILKRVPNSVLWLLRFPAVG NILKRVPNSVLWLLRFPAVGEPNIQQYAQN R V P L R F 0 1 1 0 0 0 0 0 0 0 3 0 0 0 1 1 0 1 0 2 0 0 10 0 1195.7077 O15294 O15294 868 877 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.013464 40.002 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 1 1.0097 0.88556 19.13 6 Median 0.90765 0.87158 27.654 2 0 Median 0.77169 0.6779 NaN 1 0 Median 0.99858 1.0695 NaN 1 0 Median 1.0516 0.90546 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.021 0.86611 NaN 1 0 Median 8310600 4369600 3941000 2719200 1459200 1260000 1037600 584980 452640 3943300 2013600 1929700 515620 259720 255900 0 0 0 94915 52185 42731 37166 1537 39068 196893;196894;196895;196896;196897;196898 200163;200164;200165;200166 200165 4 VPPAINQFTQALDR IRLQRQRAILYKRLKVPPAINQFTQALDRQ KVPPAINQFTQALDRQTATQLLKLAHKYRP K V P D R Q 2 1 1 1 0 2 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 14 0 1568.8311 P62424;Q5T8U3 P62424 76 89 RPL7A 60S ribosomal protein L7a yes no 2;3 1.1179E-05 145.28 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 2 2 2 0.81581 0.74134 13.759 11 Median 0.78458 0.80168 11.066 2 0 Median 1.0018 0.84569 NaN 1 0 Median 0.73327 0.7128 26.713 2 0 Median 0.86897 0.72828 9.0665 2 0 Median 0.77225 0.77143 6.1428 2 0 Median 0.79397 0.64152 12.46 2 0 Median 69370000 38722000 30648000 11797000 6041300 5756200 1708200 820350 887820 9336400 5888700 3447800 1403900 759680 644240 31910000 18287000 13623000 13214000 6924500 6289300 37167 2589 39069 196899;196900;196901;196902;196903;196904;196905;196906;196907;196908;196909 200167;200168;200169;200170;200171;200172;200173;200174;200175 200169 9 VPPAVIIPPAAPLSGR RQKHEIESLYTKLGKVPPAVIIPPAAPLSG PPAVIIPPAAPLSGRRRRPTKSKGSKSSRS K V P G R R 3 1 0 0 0 0 0 1 0 2 1 0 0 0 5 1 0 0 0 2 0 0 16 0 1553.9293 F5GWT4;Q9H4A3 F5GWT4 1860 1875 WNK1 Serine/threonine-protein kinase WNK1 yes no 2 1.1324E-07 79.693 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37168 1001 39070 196910 200176 200176 1 VPPEFLVQR WIGREQILGDEARARVPPEFLVQRAVHANP DEARARVPPEFLVQRAVHANPPTLLLPVAH R V P Q R A 0 1 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 1083.6077 Q13724;A0A3B3IRK6;A0A3B3IRW2 Q13724 498 506 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.0096066 65.252 By MS/MS 1 3.5321 3.6804 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.5321 3.6804 NaN 1 1 Median NaN NaN NaN 0 0 Median 5825400 1165400 4660000 0 0 0 0 0 0 0 0 0 0 0 0 5825400 1165400 4660000 0 0 0 37169 2835 39071 196911 200177 200177 1 VPPFVDLNVNSNEGK NNLNLPQVALSFGFKVPPFVDLNVNSNEGK VPPFVDLNVNSNEGKQKKRGGGGGFGYQKT K V P G K Q 0 0 3 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 3 0 0 15 0 1627.8206 Q9NVP1 Q9NVP1 617 631 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 4.2131E-09 129.84 By MS/MS By MS/MS By matching 1 2 1 0.81458 0.82668 9.9545 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79948 0.80498 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80034 0.86115 2.0128 2 1 Median 0.88041 0.69824 NaN 1 0 Median 28707000 15494000 13213000 0 0 0 0 0 0 14579000 7494500 7084400 0 0 0 13580000 7718100 5862200 547450 280980 266460 37170 4137 39072 196912;196913;196914;196915 200178;200179;200180;200181;200182;200183;200184;200185;200186 200180 9 VPPGYHPLDVEKEWGK IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG PPGYHPLDVEKEWGKLHVAILEREKQLRSE K V P G K L 0 0 0 1 0 0 2 2 1 0 1 2 0 0 3 0 0 1 1 2 0 0 16 1 1849.9363 Q15149;H0YDN1;E9PMV1 Q15149 494 509 PLEC Plectin yes no 3;4 4.1105E-05 61.641 By MS/MS By matching By matching 2 1 1 0.77443 0.84342 5.5942 4 Median 0.77443 0.84342 1.534 2 1 Median 0.90553 0.86274 NaN 1 0 Median 0.67143 0.76252 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41910000 24303000 17608000 32035000 19160000 12876000 5198500 2484700 2713800 4676500 2658500 2018100 0 0 0 0 0 0 0 0 0 37171 2933 39073 196916;196917;196918;196919 200187;200188;200189 200188 3 VPPIKPNAGEESVMNLDK ACALSIEESCRPGDKVPPIKPNAGEESVMN IKPNAGEESVMNLDKLRFADGSIRTSELRL K V P D K L 1 0 2 1 0 0 2 1 0 1 1 2 1 0 3 1 0 0 0 2 0 0 18 1 1936.9928 P31040;D6RFM5;A0A087X1I3;H0Y8X1 P31040 481 498 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 1.7188E-06 69.605 By MS/MS By MS/MS 1 1 0.82476 0.7684 24.77 2 Median 0.69347 0.64494 NaN 1 0 Median 0.98092 0.91549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51091000 29343000 21748000 39148000 23259000 15889000 11944000 6084700 5859000 0 0 0 0 0 0 0 0 0 0 0 0 37172 2200 39074 196920;196921 200190;200191;200192 200190 3 VPPPPPIAR FQRDYYDRMYSYPARVPPPPPIARAVVPSK YSYPARVPPPPPIARAVVPSKRQRVSGNTS R V P A R A 1 1 0 0 0 0 0 0 0 1 0 0 0 0 5 0 0 0 0 1 0 0 9 0 942.56509 B2R5W2;G3V4C1;B4DY08;G3V4W0;P07910;G3V2Q1;G3V576;G3V2D6;G3V5V7;G3V555;G3V575 B2R5W2 130 138 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes no 2 0.00047332 122.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 3 10 5 0.56063 0.48015 18.682 23 Median 0.61087 0.61792 NaN 1 0 Median 0.56418 0.49146 40.06 3 0 Median 0.4729 0.51595 12.229 3 0 Median 0.59193 0.48489 15.757 3 0 Median 0.45159 0.44995 16.051 8 0 Median 0.59938 0.48015 3.0244 5 0 Median 1572900000 1034500000 538460000 1746900 1039700 707180 8641200 5236700 3404500 48896000 33334000 15562000 46964000 28301000 18663000 1083500000 728620000 354830000 383240000 237940000 145300000 37173 582 39075 196922;196923;196924;196925;196926;196927;196928;196929;196930;196931;196932;196933;196934;196935;196936;196937;196938;196939;196940;196941;196942;196943;196944;196945;196946 200193;200194;200195;200196;200197;200198;200199;200200;200201;200202;200203;200204;200205;200206;200207;200208;200209;200210;200211;200212;200213;200214;200215;200216;200217;200218;200219;200220;200221;200222;200223;200224;200225;200226;200227;200228;200229;200230;200231;200232;200233;200234;200235;200236;200237;200238;200239;200240;200241;200242;200243;200244;200245;200246;200247;200248;200249;200250;200251;200252;200253;200254;200255;200256;200257;200258;200259;200260;200261;200262;200263;200264;200265;200266;200267;200268;200269;200270;200271;200272;200273;200274;200275;200276;200277 200204 85 VPPPWLIAMQR LRISLGMPVGPNAHKVPPPWLIAMQRYGPP NAHKVPPPWLIAMQRYGPPPSYPNLKIPGL K V P Q R Y 1 1 0 0 0 1 0 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 11 0 1306.722 Q13435;E9PPJ0;H0YEX5 Q13435 628 638 SF3B2 Splicing factor 3B subunit 2 yes no 2;3 0.0010885 60.973 By MS/MS By MS/MS By matching By MS/MS By matching 1 3 1 4 2 0.64864 0.68571 17.018 11 Median 0.74856 0.73101 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63881 0.70222 19.046 3 0 Median 0.81641 0.69781 NaN 1 0 Median 0.62954 0.65441 21.015 4 1 Median 0.79298 0.69543 2.0906 2 0 Median 54290000 33186000 21103000 2855000 1735500 1119400 0 0 0 27136000 16716000 10419000 758030 433820 324210 23107000 14072000 9034200 434420 228020 206400 37174 2817 39076;39077 196947;196948;196949;196950;196951;196952;196953;196954;196955;196956;196957 200278;200279;200280;200281;200282;200283;200284;200285;200286;200287;200288;200289 200281 1514 12 VPPTAAVAQVFER AGRPSGSTPLGPLARVPPTAAVAQVFERGN ARVPPTAAVAQVFERGNMNSEPEEEDGGLE R V P E R G 3 1 0 0 0 1 1 0 0 0 0 0 0 1 2 0 1 0 0 3 0 0 13 0 1383.751 Q8IVW6 Q8IVW6 72 84 ARID3B AT-rich interactive domain-containing protein 3B yes yes 2 0.00049996 72.006 By MS/MS By matching 1 1 0.81872 0.77046 1.1732 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72973 0.76409 NaN 1 0 Median 0.91856 0.77688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470700 2132400 1338300 0 0 0 0 0 0 3024500 1902900 1121700 446150 229530 216610 0 0 0 0 0 0 37175 3320 39078 196958;196959 200290;200291 200290 2 VPPVPDYVAHPER VEGLGRAHRSPASPRVPPVPDYVAHPERWT PRVPPVPDYVAHPERWTKYSLEDVTEVSEQ R V P E R W 1 1 0 1 0 0 1 0 1 0 0 0 0 0 4 0 0 0 1 3 0 0 13 0 1474.7569 C9JJV1;Q9Y5U2;A6NCC9;E9PME3;C9JHT9 C9JJV1 85 97 TSSC4 Protein TSSC4 yes no 3 0.0012096 40.552 By MS/MS By matching 1 1 0.66772 0.6556 9.825 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64843 0.70276 NaN 1 0 Median 0.68759 0.6116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6952000 3577000 3374900 0 0 0 0 0 0 5618200 2825100 2793100 1333800 751940 581860 0 0 0 0 0 0 37176 704 39079 196960;196961 200292 200292 1 VPPVQVSPLIK ______________________________ ______________________________ M V P I K L 0 0 0 0 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 3 0 0 11 0 1175.7278 P56385 P56385 2 12 ATP5I ATP synthase subunit e, mitochondrial yes yes 2 0.00011638 134.25 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.74788 0.6379 33.002 6 Median 0.70536 0.62821 6.0822 2 0 Median 0.70987 0.58623 8.0293 2 0 Median NaN NaN NaN 0 0 Median 1.1168 0.9233 NaN 1 0 Median 1.2362 1.3066 NaN 1 0 Median NaN NaN NaN 0 0 Median 112760000 63398000 49362000 50526000 28509000 22017000 60312000 34050000 26262000 0 0 0 433120 234300 198820 1488600 604800 883820 0 0 0 37177 2512 39080 196962;196963;196964;196965;196966;196967 200293;200294;200295;200296;200297;200298;200299;200300;200301;200302;200303;200304;200305;200306;200307;200308 200302 16 VPQAQPTKPALK KRNAAENMLEILGFKVPQAQPTKPALKSEE GFKVPQAQPTKPALKSEEKTPIKKPGDGRK K V P L K S 2 0 0 0 0 2 0 0 0 0 1 2 0 0 3 0 1 0 0 1 0 0 12 1 1276.7503 O95793;Q5JW30 O95793 356 367 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2;3 0.019624 44.309 By MS/MS By MS/MS By matching By matching By matching By matching 2 4 1 1 1 1 0.62408 0.60015 26.733 10 Median 0.63908 0.61216 37.686 2 0 Median 0.61802 0.57806 7.7329 4 0 Median 0.81322 0.86254 NaN 1 0 Median 0.59168 0.59142 NaN 1 0 Median 0.98982 1.0579 NaN 1 0 Median 0.53461 0.47648 NaN 1 0 Median 6884900 3969600 2915300 1807500 1037400 770060 3259000 1917000 1342000 243420 136020 107400 260670 164880 95791 647030 269260 377770 667270 444930 222350 37178 1794 39081 196968;196969;196970;196971;196972;196973;196974;196975;196976;196977 200309;200310;200311 200311 3 VPQDVLQK FRLTRFTELKGTGCKVPQDVLQKLLESLQE LKGTGCKVPQDVLQKLLESLQENHFQEDEQ K V P Q K L 0 0 0 1 0 2 0 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 8 0 925.52328 P49903;Q5T5U6 P49903 33 40 SEPHS1 Selenide, water dikinase 1 yes no 2 0.018519 47.849 By matching By MS/MS By MS/MS By matching 1 1 1 1 0.93415 0.85367 4.8258 4 Median 0.90661 0.88945 NaN 1 0 Median 0.96253 0.82334 NaN 1 0 Median 0.80188 0.88512 NaN 1 0 Median 0.96337 0.81035 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5086200 2453500 2632600 517690 259950 257740 1384900 677920 706940 2339700 1130500 1209200 843950 385150 458800 0 0 0 0 0 0 37179 2404 39082 196978;196979;196980;196981 200312;200313;200314 200313 3 VPQFSFSR EPVGLMTGSGVVGVKVPQFSFSRLAGADVV SGVVGVKVPQFSFSRLAGADVVLGVEMTST K V P S R L 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 2 0 0 0 1 0 0 8 0 966.49232 F8VPD4;P27708 F8VPD4 1200 1207 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0035517 89.296 By MS/MS By MS/MS By matching 2 1 1 0.9432 0.90021 26.532 3 Median 0.88627 0.87246 37.435 2 0 Median NaN NaN NaN 0 0 Median 0.9432 0.90021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22894000 11923000 10971000 21588000 11326000 10262000 0 0 0 1306100 596840 709250 0 0 0 0 0 0 0 0 0 37180 1057 39083 196982;196983;196984;196985 200315;200316;200317 200316 3 VPQIEVETHK YEVSISGEWSPWQAKVPQIEVETHKVAAPD PWQAKVPQIEVETHKVAAPDVVVPTLDTVR K V P H K V 0 0 0 0 0 1 2 0 1 1 0 1 0 0 1 0 1 0 0 2 0 0 10 0 1178.6295 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2552 2561 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 9.9297E-05 123.35 By MS/MS By MS/MS 1 1 1.6093 1.5441 20.738 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2407 1.3335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0873 1.7879 NaN 1 1 Median 12364000 5021200 7342300 0 0 0 0 0 0 5732300 2640600 3091700 0 0 0 0 0 0 6631300 2380700 4250600 37181 2865 39084 196986;196987 200318;200319 200319 2 VPQLPITNFNR KQTPKQRLLGWIQNKVPQLPITNFNRDWQD IQNKVPQLPITNFNRDWQDGKALGALVDNC K V P N R D 0 1 2 0 0 1 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1297.7143 Q14315 Q14315 173 183 FLNC Filamin-C yes yes 2 0.00013666 115.71 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 1 1 1 1 0.82976 0.6694 25.092 9 Median 1.0398 1.0055 31.351 3 0 Plateau 0.77086 0.63578 7.2869 2 0 Median 0.43588 0.47366 NaN 1 0 Median 0.83607 0.72754 NaN 1 0 Median 0.93146 0.96321 NaN 1 0 Median 0.80928 0.66315 NaN 1 0 Median 80253000 43378000 36875000 59187000 30861000 28326000 15159000 8534800 6624000 3782200 2807900 974360 1093300 607550 485700 877290 483940 393350 154550 83450 71096 37182 2871 39085 196988;196989;196990;196991;196992;196993;196994;196995;196996 200320;200321;200322;200323;200324;200325;200326;200327;200328;200329 200329 10 VPQTFTVDCSQAGR VKCSGPGLGAGVRARVPQTFTVDCSQAGRA RVPQTFTVDCSQAGRAPLQVAVLGPTGVAE R V P G R A 1 1 0 1 1 2 0 1 0 0 0 0 0 1 1 1 2 0 0 2 0 0 14 0 1564.7304 Q14315 Q14315 1461 1474 FLNC Filamin-C yes yes 2 6.9551E-11 170.52 By matching By MS/MS By matching 1 1 1 0.91711 0.7383 31.547 3 Plateau 0.83001 0.83969 NaN 1 0 Median 0.91711 0.7383 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53148 0.46117 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17244000 8798400 8445300 3012500 1294500 1718000 13863000 7241000 6621800 0 0 0 368460 262930 105530 0 0 0 0 0 0 37183 2871 39086 196997;196998;196999 200330;200331 200331 2 VPQVSTPTLVEVSR EYGFQNALIVRYTRKVPQVSTPTLVEVSRS KVPQVSTPTLVEVSRSLGKVGTRCCTKPES K V P S R S 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 2 2 0 0 4 0 0 14 0 1510.8355 CON__P02769;A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;A0A087WWT3;C9JKR2;D6RHD5;B7WNR0 CON__P02769 438 451 ALB Serum albumin no no 2 1.6744E-14 131.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1 0.0072891 0.0063469 52.291 2 Median 0.0046779 0.0043851 NaN 1 1 Median 0.011358 0.0091864 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98316000 98161000 155040 80513000 80370000 143360 845830 834150 11680 15032000 15032000 0 480010 480010 0 1445100 1445100 0 0 0 0 + 37184 746;240 39087 197000;197001;197002;197003;197004;197005;197006;197007 200332;200333;200334;200335;200336;200337;200338;200339;200340 200333 9 VPRPPPLYSHR AFVIPPVVAAPPSLRVPRPPPLYSHRMRIL PSLRVPRPPPLYSHRMRILRQGLREHAAPY R V P H R M 0 2 0 0 0 0 0 0 1 0 1 0 0 0 4 1 0 0 1 1 0 0 11 1 1317.7306 Q96L91 Q96L91 1847 1857 EP400 E1A-binding protein p400 yes yes 3 4.5883E-05 105.2 By MS/MS By matching 2 1 0.50151 0.46736 21.466 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47758 0.56271 26.302 2 0 Median 0.50151 0.46736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15137000 10257000 4879700 0 0 0 0 0 0 13614000 9276800 4337500 1522500 980310 542190 0 0 0 0 0 0 37185 3700 39088 197008;197009;197010 200341;200342 200342 2 VPSAPAPSLAYGAPAAPLSR VLPPNKEEQEGGGARVPSAPAPSLAYGAPA APSLAYGAPAAPLSRPAATMVTNVVRPVSS R V P S R P 6 1 0 0 0 0 0 1 0 0 2 0 0 0 5 3 0 0 1 1 0 0 20 0 1892.0156 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 1556 1575 CIC Protein capicua homolog yes no 2 8.3398E-11 96.591 By MS/MS By matching 1 1 0.55167 0.53778 3.1857 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47969 0.5258 NaN 1 0 Median 0.63443 0.55003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3211100 2224400 986710 0 0 0 0 0 0 3107900 2161300 946620 103160 63071 40093 0 0 0 0 0 0 37186 1283 39089 197011;197012 200343 200343 1 VPSENVLGEVGSGFK IKASNTAEVFFDGVRVPSENVLGEVGSGFK VPSENVLGEVGSGFKVAMHILNNGRFGMAA R V P F K V 0 0 1 0 0 0 2 3 0 0 1 1 0 1 1 2 0 0 0 3 0 0 15 0 1517.7726 P49748 P49748 317 331 ACADVL Very long-chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 3.3824E-08 124.12 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 0.86632 0.84274 11.078 5 Median 0.75941 0.70848 NaN 1 0 Median 1.0052 0.84274 NaN 1 0 Median 0.87321 0.89797 3.7458 2 2 Median 0.86632 0.74464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50445000 27453000 22992000 23980000 13259000 10722000 9681600 4833600 4848000 16102000 9004400 7097700 681100 356720 324380 0 0 0 0 0 0 37187 2394 39090 197013;197014;197015;197016;197017 200344;200345;200346;200347;200348 200345 5 VPSFAAGR FVSPKEEVKLEAHIRVPSFAAGRVIGKGGK KLEAHIRVPSFAAGRVIGKGGKTVNELQNL R V P G R V 2 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 8 0 803.42899 O00425 O00425 494 501 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.0021177 92.467 By MS/MS 1 0.81477 0.78873 NaN 1 Median 0.81477 0.78873 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5724100 3209900 2514200 5724100 3209900 2514200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37188 1462 39091 197018 200349 200349 1 VPSGFYVGSYVHGAMQSPSLHK KLGENMILKRAAWVKVPSGFYVGSYVHGAM GSYVHGAMQSPSLHKLVLGKYGALVICETS K V P H K L 1 0 0 0 0 1 0 3 2 0 1 1 1 1 2 4 0 0 2 3 0 0 22 0 2347.1419 P43897 P43897 207 228 TSFM Elongation factor Ts, mitochondrial yes yes 3;4 3.2078E-05 52.03 By MS/MS By matching By MS/MS By matching 3 1 1 1 0.83585 0.7801 26.411 6 Median 0.72848 0.69563 15.085 3 1 Median 1.1804 1.0011 NaN 1 0 Median 0.89601 0.85992 NaN 1 0 Median 1.301 1.1065 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44950000 25578000 19372000 37936000 21657000 16279000 723730 296720 427020 6031700 3486600 2545000 258500 137560 120940 0 0 0 0 0 0 37189 2328 39092 197019;197020;197021;197022;197023;197024 200350;200351;200352;200353 200352 4 VPSLQHFR ______________________________ FMVPTQKVPSLQHFRKTEKEVIGGLCSLAN K V P F R K 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 8 0 982.53485 Q01664;I3L4L6 Q01664 11 18 TFAP4 Transcription factor AP-4 no no 2 0.012659 54.549 By MS/MS 2 1.1076 1.273 78.297 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1076 1.273 78.297 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3952600 2150800 1801800 0 0 0 0 0 0 3952600 2150800 1801800 0 0 0 0 0 0 0 0 0 37190 2690 39093 197025;197026 200354 200354 1 VPSLTTVPQTQGQTTAQK RGLGATTKITTSHPRVPSLTTVPQTQGQTT LTTVPQTQGQTTAQKVSKKTGPRCSTAIAT R V P Q K V 1 0 0 0 0 4 0 1 0 0 1 1 0 0 2 1 5 0 0 2 0 0 18 0 1883.9953 Q9BW19 Q9BW19 69 86 KIFC1 Kinesin-like protein KIFC1 yes yes 2;3 6.8187E-08 92.856 By MS/MS By MS/MS 2 2 0.91512 0.86459 8.1053 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79408 0.81197 9.1119 2 0 Median 1.0462 0.89313 4.8254 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21386000 11367000 10019000 0 0 0 0 0 0 18613000 10114000 8498600 2772700 1252200 1520500 0 0 0 0 0 0 37191 3860 39094 197027;197028;197029;197030 200355;200356;200357;200358;200359;200360 200355 6 VPSLVGSFIR YEKACQKMILELFSKVPSLVGSFIRSQNKE ELFSKVPSLVGSFIRSQNKEDYAGLKEEFR K V P I R S 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 2 0 0 0 2 0 0 10 0 1073.6233 P78417;Q5TA02 P78417 123 132 GSTO1 Glutathione S-transferase omega-1 yes no 2 5.6804E-05 126.41 By MS/MS By MS/MS By MS/MS By matching 6 4 1 1 0.88606 0.84579 15.448 11 Median 0.8814 0.8504 13.076 5 1 Median 0.93006 0.79255 18.457 4 0 Median 0.88048 0.84579 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1198 0.92372 NaN 1 0 Median 459890000 231140000 228740000 417640000 209560000 208070000 25145000 12801000 12345000 16874000 8690700 8183600 0 0 0 0 0 0 232420 92457 139970 37192 2646 39095 197031;197032;197033;197034;197035;197036;197037;197038;197039;197040;197041;197042 200361;200362;200363;200364;200365;200366;200367;200368;200369;200370 200364 10 VPSNASWEQAMK EEAKQAFKELLKEKRVPSNASWEQAMKMII EKRVPSNASWEQAMKMIINDPRYSALAKLS R V P M K M 2 0 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 12 0 1346.6289 O75400;A0A3F2YNY6;F5H578 O75400 409 420 PRPF40A Pre-mRNA-processing factor 40 homolog A yes no 2 0.00014004 88.681 By matching By MS/MS By matching 1 2 1 1.079 0.92504 15.639 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83446 0.91709 NaN 1 0 Median 1.2189 1.0583 23.477 2 0 Median NaN NaN NaN 0 0 Median 1.1194 0.93305 NaN 1 0 Median 11884000 5630900 6253200 0 0 0 0 0 0 6425700 3093800 3331900 4695500 2156000 2539500 0 0 0 762830 381090 381740 37193 1670 39096 197043;197044;197045;197046 200371;200372 200372 2 VPSPPDEHQEAENAVSSGNR NHEKQESQDLRATAKVPSPPDEHQEAENAV DEHQEAENAVSSGNRDSKVPSEGKKSLYTD K V P N R D 2 1 2 1 0 1 3 1 1 0 0 0 0 0 3 3 0 0 0 2 0 0 20 0 2118.9566 Q9BXS6 Q9BXS6 133 152 NUSAP1 Nucleolar and spindle-associated protein 1 yes yes 3 7.721E-09 65.25 By matching By MS/MS 1 3 0.72005 0.60925 34.5 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1276 1.0806 NaN 1 0 Median 0.66228 0.5677 14.653 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9072100 5114500 3957600 0 0 0 0 0 0 1307700 578030 729690 7764400 4536500 3227900 0 0 0 0 0 0 37194 3881 39097 197047;197048;197049;197050 200373;200374;200375 200374 3 VPSSTVEYLK VQTLVIGRGMSEALKVPSSTVEYLKKHGID SEALKVPSSTVEYLKKHGIDVRVLQTEQAV K V P L K K 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 2 1 0 1 2 0 0 10 0 1121.5968 E9PNP3;E9PR47;Q9H7C9 E9PNP3 96 105 AAMDC Mth938 domain-containing protein yes no 2 0.00036244 87.308 By MS/MS By MS/MS By matching By matching 1 1 1 2 0.7811 0.71021 62.635 5 Median 0.7811 0.71021 NaN 1 0 Median 1.0699 0.88003 NaN 1 0 Median 0.20944 0.20515 NaN 1 0 Median 0.76073 0.64868 50.688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34345000 16818000 17526000 12829000 6408900 6419800 17091000 7901000 9189600 3140700 1839800 1300900 1284700 668520 616140 0 0 0 0 0 0 37195 974 39098 197051;197052;197053;197054;197055 200376;200377;200378 200377 3 VPSSTVEYLKK VQTLVIGRGMSEALKVPSSTVEYLKKHGID EALKVPSSTVEYLKKHGIDVRVLQTEQAVK K V P K K H 0 0 0 0 0 0 1 0 0 0 1 2 0 0 1 2 1 0 1 2 0 0 11 1 1249.6918 E9PNP3;E9PR47;Q9H7C9 E9PNP3 96 106 AAMDC Mth938 domain-containing protein yes no 2;3 3.8262E-05 129.38 By MS/MS By MS/MS By matching By matching 2 2 1 1 0.97387 0.87747 17.252 6 Median 0.83044 0.77768 6.4481 2 0 Median 1.1565 1.0026 8.2249 2 0 Median 0.67373 0.69015 NaN 1 0 Median 1.1908 0.99877 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44346000 22564000 21782000 19994000 10974000 9020300 22142000 10460000 11682000 1844800 977610 867230 364800 152360 212440 0 0 0 0 0 0 37196 974 39099 197056;197057;197058;197059;197060;197061 200379;200380;200381;200382;200383 200381 5 VPSTETEALASNLMGMFEK VVEGSFVYKGGKIYKVPSTETEALASNLMG ETEALASNLMGMFEKRRFRKFLVFVANFDE K V P E K R 2 0 1 0 0 0 3 1 0 0 2 1 2 1 1 2 2 0 0 1 0 0 19 0 2053.97 P31150 P31150 119 137 GDI1 Rab GDP dissociation inhibitor alpha yes yes 2 3.9701E-06 51.211 By matching By MS/MS By matching 1 1 1 0.8968 0.88337 3.1332 3 Median 0.8968 0.88337 NaN 1 0 Median 1.0116 0.88466 NaN 1 0 Median 0.80892 0.83733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2866400 1439800 1426600 834960 406470 428500 1066100 511200 554940 965300 522140 443160 0 0 0 0 0 0 0 0 0 37197 2201 39100 197062;197063;197064 200384 200384 1 VPSVPETELTDQAWLPAGVR RIDAFLREVNQRVVRVPSVPETELTDQAWL ETELTDQAWLPAGVRVPLHQVPYAVKGCFR R V P V R V 2 1 0 1 0 1 2 1 0 0 2 0 0 0 3 1 2 1 0 3 0 0 20 0 2164.1164 Q9H6R4;A0A0A0MRW6 Q9H6R4 119 138 NOL6 Nucleolar protein 6 yes no 2;3 3.0908E-05 43.991 By MS/MS By matching By MS/MS 1 1 2 0.66919 0.72457 18.392 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67999 0.74697 NaN 1 0 Median 1.1007 0.98012 NaN 1 0 Median 0.62756 0.66981 6.8075 2 1 Median NaN NaN NaN 0 0 Median 6289600 3663900 2625700 0 0 0 0 0 0 3299200 1773300 1525900 116770 51185 65581 2873600 1839400 1034200 0 0 0 37198 3976 39101 197065;197066;197067;197068 200385;200386;200387;200388 200386 4 VPSVSSSALVSSLHLLK LQAIERYMKQAIVDKVPSVSSSALVSSLHL SVSSSALVSSLHLLKCSFDVVKRWVNEAQE K V P L K C 1 0 0 0 0 0 0 0 1 0 4 1 0 0 1 6 0 0 0 3 0 0 17 0 1722.988 Q9Y678 Q9Y678 152 168 COPG1 Coatomer subunit gamma-1 yes yes 3 0.026973 14.922 By MS/MS By matching By matching 1 1 1 0.7571 0.67551 20.797 3 Median NaN NaN NaN 0 0 Median 0.99756 0.87197 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7571 0.67551 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68661 0.57751 NaN 1 0 Median 12955000 6439200 6515500 0 0 0 11261000 5616200 5645100 0 0 0 619360 242810 376550 0 0 0 1074000 580200 493810 37199 4481 39102 197069;197070;197071 200389 200389 1 VPTANVSVVDLTCR VIPELNGKLTGMAFRVPTANVSVVDLTCRL RVPTANVSVVDLTCRLEKPAKYDDIKKVVK R V P C R L 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 4 0 0 14 0 1529.7872 P04406;E7EUT5 P04406 235 248 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 1.9136E-16 186.46 By MS/MS By MS/MS By MS/MS By matching 4 7 2 1 0.87805 0.8405 67.331 14 Median 0.85876 0.91223 8.2099 4 0 Linear 1.0348 0.90312 68.022 7 1 Median 0.28836 0.29057 119.77 2 1 Median NaN NaN NaN 0 0 Median 0.81612 0.86108 NaN 1 0 Median NaN NaN NaN 0 0 Median 532390000 273420000 258970000 125510000 64340000 61171000 370850000 185490000 185370000 32041000 21645000 10395000 0 0 0 3987200 1948900 2038300 0 0 0 37200 1850 39103 197072;197073;197074;197075;197076;197077;197078;197079;197080;197081;197082;197083;197084;197085 200390;200391;200392;200393;200394;200395;200396;200397;200398;200399;200400;200401;200402;200403;200404 200391 15 VPTEPPATSVAAR LQSSADTSSSRPGSRVPTEPPATSVAARSS SRVPTEPPATSVAARSSSLPSGRWGRPEAH R V P A R S 3 1 0 0 0 0 1 0 0 0 0 0 0 0 3 1 2 0 0 2 0 0 13 0 1294.6881 Q92610 Q92610 942 954 ZNF592 Zinc finger protein 592 yes yes 2 1.2121E-06 114.4 By MS/MS By MS/MS 1 2 0.81057 0.71447 18.489 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51631 0.56786 NaN 1 0 Median 0.87844 0.7648 9.6277 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8336200 5159000 3177200 0 0 0 0 0 0 6724800 4336600 2388200 1611400 822400 789000 0 0 0 0 0 0 37201 3543 39104 197086;197087;197088 200405;200406;200407;200408;200409 200406 5 VPTIFPLR CSVHFQGGRKTYTVRVPTIFPLRGVNERKV RKTYTVRVPTIFPLRGVNERKVARRPAGAA R V P L R G 0 1 0 0 0 0 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 8 0 941.56984 Q96EK4 Q96EK4 76 83 THAP11 THAP domain-containing protein 11 yes yes 2 0.010267 59.205 By MS/MS By matching 1 1 0.85334 0.79652 12.136 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73645 0.73102 NaN 1 0 Median 0.98879 0.86789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1358600 743430 615130 0 0 0 0 0 0 1229600 677660 551960 128950 65775 63172 0 0 0 0 0 0 37202 3635 39105 197089;197090 200410 200410 1 VPTISINK EIINSKDVKVQVMGKVPTISINKTDGCHAY KVQVMGKVPTISINKTDGCHAYLSKNSLDC K V P N K T 0 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 1 0 0 1 0 0 8 0 870.51747 Q01518;B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123 Q01518 405 412 CAP1;CAP2 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 no no 2 0.0035089 91.9 By MS/MS By MS/MS 1 1 0.95347 0.84261 3.9446 2 Median 0.93808 0.86644 NaN 1 0 Median 0.9691 0.81943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46651000 23260000 23390000 19844000 10052000 9792100 26806000 13208000 13598000 0 0 0 0 0 0 0 0 0 0 0 0 37203 2686;91 39106 197091;197092 200411;200412;200413 200412 3 VPTKRPTDYFAEMAK QAAVLAVLPRLHQLKVPTKRPTDYFAEMAK VPTKRPTDYFAEMAKSDLQMQKIRQKLQTK K V P A K S 2 1 0 1 0 0 1 0 0 0 0 2 1 1 2 0 2 0 1 1 0 0 15 2 1752.8869 H7C2Q8;Q99848 H7C2Q8 183 197 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 3 0.036852 16.529 By matching By MS/MS 1 1 0.95105 1.0318 1.3077 2 Median 1.0312 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87709 1.0223 NaN 1 0 Median NaN NaN NaN 0 0 Median 20886000 10207000 10679000 2599200 1040100 1559200 0 0 0 0 0 0 0 0 0 18287000 9166500 9120200 0 0 0 37204 1262 39107 197093;197094 200414 200414 1 VPTLAVPAISLPDDVR ______________________________ PTLAVPAISLPDDVRRRLKDLERDSLTEKE R V P V R R 2 1 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 16 0 1661.9352 P26358;K7EJL0;K7EIZ6;K7EMU8 P26358 10 25 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 3.0823E-08 128.85 By matching By MS/MS By MS/MS 1 3 2 0.53075 0.52253 21.852 6 Median 0.51462 0.50805 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54739 0.55438 12.903 3 0 Median 0.47691 0.41749 35.713 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18170000 11154000 7016200 302060 186180 115880 0 0 0 16543000 10209000 6333300 1325200 758210 567010 0 0 0 0 0 0 37205 2142 39108 197095;197096;197097;197098;197099;197100 200415;200416;200417;200418;200419;200420 200417 6 VPTLAVPAISLPDDVRR ______________________________ TLAVPAISLPDDVRRRLKDLERDSLTEKEC R V P R R R 2 2 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 17 1 1818.0363 P26358;K7EJL0;K7EIZ6;K7EMU8 P26358 10 26 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes no 2 0.044213 23.749 By MS/MS By matching 1 1 0.52258 0.55893 21.599 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51546 0.65115 NaN 1 0 Median 0.52979 0.47976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7614500 4823200 2791300 0 0 0 0 0 0 7316000 4628000 2688100 298480 195240 103250 0 0 0 0 0 0 37206 2142 39109 197101;197102 200421;200422 200421 2 VPTTEKPTVTVNFR SVAYANMCRCLMALKVPTTEKPTVTVNFRK KVPTTEKPTVTVNFRKLLLNRCQKEFEKDK K V P F R K 0 1 1 0 0 0 1 0 0 0 0 1 0 1 2 0 4 0 0 3 0 0 14 1 1587.8621 E7EX73;E9PGM1;E7EUU4;Q04637;C9JF13;C9J6B6;C9K073 E7EX73 664 677 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2;3 1.5383E-15 181.68 By MS/MS By MS/MS By MS/MS By MS/MS 5 6 2 2 0.78012 0.72054 23.546 15 Median 0.69387 0.6804 10.707 5 0 Median 0.87726 0.78416 28.857 6 0 Median NaN NaN NaN 0 0 Median 0.97066 0.93493 17.758 2 1 Median NaN NaN NaN 0 0 Median 0.69199 0.6147 18.778 2 1 Median 177910000 96586000 81325000 98116000 53941000 44175000 56099000 30597000 25501000 0 0 0 19181000 9338200 9843300 0 0 0 4514300 2709700 1804600 37207 894 39110 197103;197104;197105;197106;197107;197108;197109;197110;197111;197112;197113;197114;197115;197116;197117 200423;200424;200425;200426;200427;200428;200429;200430;200431;200432;200433;200434;200435;200436;200437;200438 200426 16 VPTWGPLR SCVIVIRVLRDLCTRVPTWGPLRGWPLELL LRDLCTRVPTWGPLRGWPLELLCEKSIGTA R V P L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 1 0 1 0 0 8 0 924.51814 Q12906;K7EKJ9;K7EQR9 Q12906 240 247 ILF3 Interleukin enhancer-binding factor 3 yes no 2 0.0023954 108.98 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 3 1 4 3 0.73515 0.71182 29.5 13 Median 0.7522 0.71182 NaN 1 0 Median 0.91785 0.79315 NaN 1 0 Median 0.73515 0.7763 32.67 3 0 Median 0.93966 0.80116 NaN 1 0 Median 0.68641 0.7465 3.6026 4 0 Linear 0.82159 0.69001 41.861 3 0 Plateau 129300000 73026000 56270000 8692200 4724000 3968300 7017900 3576700 3441300 52054000 28566000 23488000 1151700 579250 572490 47971000 28005000 19967000 12409000 7575200 4834000 37208 2769 39111 197118;197119;197120;197121;197122;197123;197124;197125;197126;197127;197128;197129;197130 200439;200440;200441;200442;200443;200444;200445;200446;200447;200448;200449;200450;200451;200452;200453;200454;200455;200456 200442 18 VPTYKDYVDLFR EDHRASGEVRTGKWKVPTYKDYVDLFRHLL KWKVPTYKDYVDLFRHLLSSDQMMDSILAD K V P F R H 0 1 0 2 0 0 0 0 0 0 1 1 0 1 1 0 1 0 2 2 0 0 12 1 1514.7769 P78527 P78527 521 532 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.0003327 69.979 By MS/MS By matching By MS/MS By matching By matching 5 1 3 1 1 0.9015 0.92747 33.025 11 Median 0.9015 0.89546 15.872 5 1 Median 1.5974 1.4466 NaN 1 0 Median 0.79912 0.92537 6.3459 3 0 Median 2.4782 2.3538 NaN 1 0 Median 1.3104 1.4869 NaN 1 0 Median NaN NaN NaN 0 0 Median 57685000 30664000 27022000 30969000 16623000 14346000 2595000 1169900 1425100 21779000 11898000 9880700 727230 288290 438940 1615500 684540 930940 0 0 0 37209 2647 39112 197131;197132;197133;197134;197135;197136;197137;197138;197139;197140;197141 200457;200458;200459;200460;200461;200462 200461 6 VPVATYTNSSQPFR TLLSPPSANNATFARVPVATYTNSSQPFRL RVPVATYTNSSQPFRLGERSFSRQYAHIYA R V P F R L 1 1 1 0 0 1 0 0 0 0 0 0 0 1 2 2 2 0 1 2 0 0 14 0 1565.7838 F8W8R3;A0A087WWF6;P49005;C9IZD2;C9J8Z7;C9JLE1;C9JHC7 F8W8R3 27 40 POLD2 DNA polymerase delta subunit 2 yes no 2 2.4032E-23 195.27 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.81781 0.75257 26.872 4 Median 0.63982 0.60857 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69894 0.68663 NaN 1 0 Median 0.95691 0.82483 NaN 1 0 Median 1.1199 1.1283 NaN 1 0 Median NaN NaN NaN 0 0 Median 41649000 23882000 17768000 14538000 8655300 5882400 0 0 0 15895000 9280200 6615100 8805700 4716800 4088900 2410800 1229600 1181200 0 0 0 37210 58 39113 197142;197143;197144;197145 200463;200464;200465;200466;200467;200468;200469 200466 7 VPVDEFDGK EHLNCTISQVEPDIKVPVDEFDGKVTYGQK VEPDIKVPVDEFDGKVTYGQKRAAGGGSYK K V P G K V 0 0 0 2 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 2 0 0 9 0 1004.4815 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 598 606 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.00053852 116.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.84151 0.84235 10.989 5 Median 0.75904 0.70559 NaN 1 0 Median 1.0812 0.94476 NaN 1 0 Median 0.77071 0.81035 5.478 2 0 Median 0.99658 0.86155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59319000 30327000 28991000 6059700 3176400 2883400 9151600 4303600 4848000 24839000 13740000 11099000 19269000 9107600 10161000 0 0 0 0 0 0 37211 135 39114 197146;197147;197148;197149;197150 200470;200471;200472;200473;200474;200475;200476;200477;200478 200475 9 VPVDVAYQR QIATGGIIDPVHSHRVPVDVAYQRGYFSEE PVHSHRVPVDVAYQRGYFSEEMNRVLADPS R V P Q R G 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 0 1045.5556 P58107;A0A075B730;Q15149;H0YDN1 Q15149 3620 3628 EPPK1;PLEC Epiplakin;Plectin no no 2 6.3546E-05 150.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 3 1.095 0.9424 9.8834 6 Median 0.92127 0.89758 NaN 1 0 Median 1.1085 0.88579 NaN 1 0 Median 0.89132 0.94234 NaN 1 0 Median 1.0817 0.94246 NaN 1 0 Median 1.1285 1.1616 NaN 1 0 Median 1.2015 0.99224 NaN 1 0 Median 90515000 46384000 44131000 16656000 8851700 7804100 38681000 18815000 19866000 8520800 5051300 3469600 4773200 2358500 2414700 9379800 4777700 4602000 12504000 6530000 5974200 37212 2933;2520 39115 197151;197152;197153;197154;197155;197156;197157;197158 200479;200480;200481;200482;200483;200484;200485;200486;200487;200488;200489;200490;200491 200481 13 VPVDVAYR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE DPVHSHRVPVDVAYRRGYFDEEMNRVLADP R V P Y R R 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 8 0 917.49707 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2961 2968 EPPK1;PLEC Epiplakin;Plectin no no 2 2.4951E-13 150.02 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 3 2 2 1 3 1.1019 0.97618 17.1 10 Median 1.008 0.96958 NaN 1 1 Median 1.1789 0.96913 12.825 2 0 Median 1.1601 1.2264 NaN 1 1 Median 0.78523 0.76002 26.242 2 0 Median 0.98208 1.0055 NaN 1 0 Median 1.1671 0.99287 6.6522 3 0 Plateau 443900000 198860000 245040000 99350000 39436000 59914000 300040000 137960000 162080000 8595900 3826700 4769200 4207800 2459000 1748800 15644000 7758600 7885600 16059000 7420000 8639300 37213 2933;2520 39116 197159;197160;197161;197162;197163;197164;197165;197166;197167;197168;197169;197170;197171 200492;200493;200494;200495;200496;200497;200498;200499;200500;200501;200502;200503;200504;200505;200506 200492 15 VPVDVAYRR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE PVHSHRVPVDVAYRRGYFDEEMNRVLADPS R V P R R G 1 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 1 1073.5982 P58107;A0A075B730;Q15149;H0YDN1 Q15149 2961 2969 EPPK1;PLEC Epiplakin;Plectin no no 2 0.0025381 77.674 By MS/MS By MS/MS By MS/MS 2 1 1 1.1675 1.1241 6.2292 4 Median 1.0949 1.1804 6.6435 2 0 Median 1.1972 1.1221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2136 1.0652 NaN 1 0 Median 29278000 12579000 16698000 14816000 6253000 8563300 6688600 2881000 3807700 0 0 0 0 0 0 0 0 0 7772600 3445500 4327200 37214 2933;2520 39117 197172;197173;197174;197175 200507;200508;200509;200510;200511 200509 5 VPVDWSK LQDALVILQLYERIKVPVDWSKVNKPPYPK LQLYERIKVPVDWSKVNKPPYPKLGANMKK K V P S K V 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 2 0 0 7 0 829.4334 P13797;A0A0A0MSQ0;H7C4N2 P13797 438 444 PLS3 Plastin-3 yes no 2 0.05137 52.403 By MS/MS 1 1.0134 0.84887 NaN 1 Median NaN NaN NaN 0 0 Median 1.0134 0.84887 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11246000 5638800 5607000 0 0 0 11246000 5638800 5607000 0 0 0 0 0 0 0 0 0 0 0 0 37215 1995 39118 197176 200512 200512 1 VPVFRPMDLMVEASPR EDGRYRDPTTVTTLRVPVFRPMDLMVEASP PVFRPMDLMVEASPRRIFANAHTYHINSIS R V P P R R 1 2 0 1 0 0 1 0 0 0 1 0 2 1 3 1 0 0 0 3 0 0 16 1 1842.9484 P63151;A0A590UJY3 P63151 154 169 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 3 0.0069308 25.59 By MS/MS By matching 1 1 0.99658 0.96723 22.484 2 Median 0.81701 0.82505 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2156 1.1339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881300 2237400 1643800 2642100 1506600 1135500 0 0 0 0 0 0 1239200 730840 508340 0 0 0 0 0 0 37216 2619 39119 197177;197178 200513 200513 1 VPVGDQPKDIELQIR NVVNLTLVDLPGMTKVPVGDQPKDIELQIR VPVGDQPKDIELQIRELILRFISNPNSIIL K V P I R E 0 1 0 2 0 2 1 1 0 2 1 1 0 0 2 0 0 0 0 2 0 0 15 1 1705.9363 O00429;F8VZ52;F8W1W3;B4DDQ3;F8VUJ9 O00429 153 167 DNM1L Dynamin-1-like protein yes no 3 0.017114 22.803 By MS/MS 1 0.7511 0.77003 NaN 1 Median 0.7511 0.77003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3913700 1924800 1988900 3913700 1924800 1988900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37217 1463 39120 197179 200514 200514 1 VPVGDQPPDIEYQIK HVLNLTLIDLPGITKVPVGDQPPDIEYQIK VPVGDQPPDIEYQIKDMILQFISRESSLIL K V P I K D 0 0 0 2 0 2 1 1 0 2 0 1 0 0 3 0 0 0 1 2 0 0 15 0 1696.8672 P50570 P50570 143 157 DNM2 Dynamin-2 yes yes 2 1.0069E-09 120.86 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 0.66923 0.58529 26.587 6 Median 0.95327 0.92716 NaN 1 1 Median 0.45486 0.40918 NaN 1 0 Median 0.61878 0.66574 NaN 1 0 Median 0.66923 0.57756 4.5833 2 0 Median NaN NaN NaN 0 0 Median 0.68913 0.5742 NaN 1 0 Median 51085000 30590000 20495000 6444100 3555400 2888700 496150 272930 223220 39650000 24204000 15446000 3677000 2144800 1532200 0 0 0 818010 413100 404910 37218 2417 39121 197180;197181;197182;197183;197184;197185 200515;200516;200517 200516 3 VPVHDVTDASK NVTYGGHQVPGSPFKVPVHDVTDASKVKCS SPFKVPVHDVTDASKVKCSGPGLSPGMVRA K V P S K V 1 0 0 2 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 3 0 0 11 0 1166.5932 P21333;Q60FE5;A0A087WWY3 P21333 1440 1450 FLNA Filamin-A no no 2 0.00018162 93.667 By matching By MS/MS By MS/MS By MS/MS By matching 5 4 1 2 1 0.90549 0.89662 15.744 13 Median 0.95461 0.94484 3.6851 5 0 Median 0.82129 0.72821 7.6346 4 0 Median 0.90549 1.0065 NaN 1 0 Median 0.81394 0.73882 11.323 2 0 Median 1.029 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median 37587000 19781000 17806000 5143600 2585300 2558300 28879000 15304000 13576000 1868600 1021900 846730 631530 337080 294450 1063900 533270 530660 0 0 0 37219 2088;3120 39122 197186;197187;197188;197189;197190;197191;197192;197193;197194;197195;197196;197197;197198 200518;200519;200520;200521;200522;200523;200524;200525 200519 8 VPVKDVVDPGK NITFGGRPIPGSPFRVPVKDVVDPGKVKCS SPFRVPVKDVVDPGKVKCSGPGLGAGVRAR R V P G K V 0 0 0 2 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 4 0 0 11 1 1151.655 Q14315 Q14315 1435 1445 FLNC Filamin-C yes yes 2 0.0032895 64.439 By MS/MS By matching 1 2 0.78535 0.79787 18.434 3 Median NaN NaN NaN 0 0 Median 0.70565 0.67313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90649 0.88103 14.023 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9385900 5439700 3946200 0 0 0 8168400 4726100 3442400 0 0 0 1217500 713590 503860 0 0 0 0 0 0 37220 2871 39123 197199;197200;197201 200526;200527 200527 2 VPVKDVVDPSK NITYGGAHIPGSPFRVPVKDVVDPSKVKIA SPFRVPVKDVVDPSKVKIAGPGLGSGVRAR R V P S K V 0 0 0 2 0 0 0 0 0 0 0 2 0 0 2 1 0 0 0 4 0 0 11 1 1181.6656 O75369;E7EN95 O75369 1413 1423 FLNB Filamin-B yes no 2;3 0.00052631 130.01 By MS/MS By MS/MS By matching By matching 3 4 1 1 0.72056 0.73918 16.516 6 Median 0.73799 0.77594 15.235 2 0 Median 0.68105 0.65801 24.822 2 0 Median 0.57517 0.65942 NaN 1 0 Median 0.80567 0.81852 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25003000 9520500 15483000 4145100 1849500 2295500 19253000 6653100 12600000 1048200 704230 344010 556680 313590 243100 0 0 0 0 0 0 37221 1664 39124 197202;197203;197204;197205;197206;197207;197208;197209;197210 200528;200529;200530;200531;200532;200533;200534;200535;200536 200535 9 VPVLGSLLNLPGIR LFRGFFPVVVGFIRRVPVLGSLLNLPGIRS RVPVLGSLLNLPGIRSFVDKVGESNNMV__ R V P I R S 0 1 1 0 0 0 0 2 0 1 4 0 0 0 2 1 0 0 0 2 0 0 14 0 1446.8922 Q9Y3E0;G3V1U5;F5H6U7 Q9Y3E0 112 125 GOLT1B Vesicle transport protein GOT1B yes no 2 9.9001E-24 201.1 By MS/MS By MS/MS By matching 3 7 1 0.84694 0.78456 7.6437 11 Median 0.79918 0.80151 3.8902 3 0 Median 0.88548 0.76968 5.0892 7 0 Median 0.84694 0.94326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72948000 37190000 35758000 10535000 5577700 4957800 62269000 31542000 30727000 143530 70071 73456 0 0 0 0 0 0 0 0 0 37222 4425 39125 197211;197212;197213;197214;197215;197216;197217;197218;197219;197220;197221 200537;200538;200539;200540;200541;200542;200543;200544;200545 200543 9 VPVNLLR HACFRLFLTMEINPKVPVNLLRAGRIFVFE LTMEINPKVPVNLLRAGRIFVFEPPPGVKA K V P L R A 0 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 7 0 809.51232 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542 Q14204 4134 4140 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0022429 114.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 3 2 3 1 1 1.1238 0.9617 13.956 11 Median 0.9244 0.89932 NaN 1 0 Median 1.1238 0.93694 5.791 3 0 Median 1.0267 1.1073 19.939 2 0 Median 1.1359 0.98997 14.448 3 0 Median 1.1585 1.2169 NaN 1 0 Median 1.0393 0.86444 NaN 1 0 Median 98058000 48758000 49300000 20421000 10471000 9950400 36835000 18425000 18410000 27264000 14038000 13225000 8042100 3499500 4542600 3006700 1151600 1855100 2488800 1171900 1316900 37223 2865 39126 197222;197223;197224;197225;197226;197227;197228;197229;197230;197231;197232 200546;200547;200548;200549;200550;200551;200552;200553;200554;200555;200556;200557;200558;200559;200560;200561 200549 16 VPVPDER AENFPFCTIDPNESRVPVPDERFDFLCQYH TIDPNESRVPVPDERFDFLCQYHKPASKIP R V P E R F 0 1 0 1 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 7 0 810.42357 J3KQ32;Q9NTK5;C9JTK6 J3KQ32 84 90 OLA1 Obg-like ATPase 1 yes no 2 0.02008 60.76 By MS/MS By matching 2 1 0.86176 0.7487 5.55 3 Plateau NaN NaN NaN 0 0 Median 0.84435 0.73511 2.591 2 0 Median NaN NaN NaN 0 0 Median 0.77839 0.67134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5859300 3003100 2856200 0 0 0 5656000 2886400 2769600 0 0 0 203230 116650 86572 0 0 0 0 0 0 37224 1315 39127 197233;197234;197235 200562;200563 200562 2 VPVPPNVAFELDR LDFYHSFLEKTAVLRVPVPPNVAFELDRTR LRVPVPPNVAFELDRTRADLISEDVQRRFV R V P D R T 1 1 1 1 0 0 1 0 0 0 1 0 0 1 3 0 0 0 0 3 0 0 13 0 1451.7773 M0QZR4;Q92888 M0QZR4 112 124 ARHGEF1 Rho guanine nucleotide exchange factor 1 yes no 2 0.00035111 87.298 By MS/MS 1 0.51304 0.50953 NaN 1 Median 0.51304 0.50953 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1784100 1218500 565610 1784100 1218500 565610 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37225 1424 39128 197236 200564 200564 1 VPVSDLLLSYESPK MTIQKVKGLLSRLLKVPVSDLLLSYESPKK KVPVSDLLLSYESPKKPGREIELENDLKSL K V P P K K 0 0 0 1 0 0 1 0 0 0 3 1 0 0 2 3 0 0 1 2 0 0 14 0 1545.829 Q15813;A0A2R8Y5Q8;A0A2R8YHI9;A0A2R8Y7E7;A0A2U3TZJ6;A0A2R8Y6Q1 Q15813 484 497 TBCE Tubulin-specific chaperone E yes no 2 1.0995E-05 103.22 By MS/MS By MS/MS 1 1 0.87193 0.78904 10.768 2 Median 0.7662 0.73119 NaN 1 1 Median 0.99225 0.85147 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8179500 4467300 3712200 5931800 3444100 2487700 2247700 1023200 1224500 0 0 0 0 0 0 0 0 0 0 0 0 37226 373 39129 197237;197238 200565;200566 200565 2 VPVSVNLLSK LLPSLIGRHFYQRKKVPVSVNLLSKNLSRE YQRKKVPVSVNLLSKNLSREINDCIGGTVL K V P S K N 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 2 0 0 0 3 0 0 10 0 1054.6386 O76021;J3QSV6;I3L3C4 O76021 179 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 2 0.00033724 85.807 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 3 6 6 1.0181 0.90907 15.976 17 Median NaN NaN NaN 0 0 Median 0.94777 0.81091 NaN 1 0 Median 0.89079 0.89494 NaN 1 0 Median 1.159 1.0909 20.957 3 0 Median 0.93108 0.91825 10.584 6 0 Median 1.1048 0.93105 19.016 6 0 Median 80964000 40536000 40428000 0 0 0 3817600 1969300 1848300 4935100 2651400 2283700 792390 383500 408890 53901000 27372000 26528000 17518000 8159200 9358700 37227 1716 39130 197239;197240;197241;197242;197243;197244;197245;197246;197247;197248;197249;197250;197251;197252;197253;197254;197255 200567;200568;200569;200570;200571;200572;200573;200574;200575 200573 9 VPVVFVTNAGNILQHSK LKAFRRLVNSQGQLRVPVVFVTNAGNILQH VVFVTNAGNILQHSKAQELSALLGCEVDAD R V P S K A 1 0 2 0 0 1 0 1 1 1 1 1 0 1 1 1 1 0 0 4 0 0 17 0 1822.0101 Q9BXW7 Q9BXW7 83 99 CECR5 Cat eye syndrome critical region protein 5 yes yes 2;3 8.5379E-06 78.692 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.0081 0.94024 16.695 5 Median 0.92883 0.86057 12.521 2 0 Median 1.3373 1.1411 NaN 1 0 Median 0.80479 0.85485 NaN 1 0 Median 1.3129 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48214000 24755000 23459000 42488000 21888000 20600000 999410 399970 599440 4623700 2417000 2206700 102840 50075 52768 0 0 0 0 0 0 37228 3882 39131 197256;197257;197258;197259;197260 200576;200577;200578;200579;200580 200577 5 VPVVHVDEK GAASLSYRVLDGPEKVPVVHVDEKGFLASG LDGPEKVPVVHVDEKGFLASGSMIGTSTIE K V P E K G 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 4 0 0 9 0 1020.5604 Q8TEM1 Q8TEM1 1329 1337 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0063689 61.962 By matching By MS/MS By MS/MS 1 2 3 1.2019 1.0563 16.376 5 Median NaN NaN NaN 0 0 Median 1.2019 1.0563 NaN 1 0 Median 0.79306 0.87497 11.589 2 1 Median 1.2782 1.1804 5.4899 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9982000 5236700 4745400 0 0 0 1160600 468340 692290 6368700 3608000 2760700 2452700 1160300 1292400 0 0 0 0 0 0 37229 3477 39132 197261;197262;197263;197264;197265;197266 200581;200582;200583;200584;200585;200586 200581 6 VPWFDQQNGR RNGSSLAKIYTEAKKVPWFDQQNGRTYLKY TEAKKVPWFDQQNGRTYLKYSIKALVQNDT K V P G R T 0 1 1 1 0 2 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 10 0 1245.5891 Q92522 Q92522 77 86 H1FX Histone H1x yes yes 2 0.0022568 60.91 By matching By MS/MS 1 1 0.75746 0.74324 19.048 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88583 0.8504 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64769 0.64958 NaN 1 0 Median NaN NaN NaN 0 0 Median 8998200 5243800 3754400 0 0 0 0 0 0 1471400 740420 731020 0 0 0 7526800 4503400 3023400 0 0 0 37230 3531 39133 197267;197268 200587;200588 200587 2 VPYAKPIPAQFQQAWMQNK EEVMQKDQKKVPQKKVPYAKPIPAQFQQAW KPIPAQFQQAWMQNKVPIPAPNEVLNDRKE K V P N K V 3 0 1 0 0 4 0 0 0 1 0 2 1 1 3 0 0 1 1 1 0 0 19 1 2244.1514 Q9C0J8 Q9C0J8 494 512 WDR33 pre-mRNA 3 end processing protein WDR33 yes yes 3 1.0162E-06 53.565 By MS/MS 1 0.55466 0.64217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.55466 0.64217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12228000 8320300 3907400 0 0 0 0 0 0 12228000 8320300 3907400 0 0 0 0 0 0 0 0 0 37231 3907 39134 197269 200589 200589 1 VPYFNAPVYLENK CEDDIVCKCTTDENKVPYFNAPVYLENKEQ NKVPYFNAPVYLENKEQIGKVDEIFGQLRD K V P N K E 1 0 2 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 2 2 0 0 13 0 1552.7926 Q9NY12 Q9NY12 95 107 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.00064243 68.657 By MS/MS By MS/MS By matching 1 1 2 0.81668 0.75547 16.973 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6545 0.61344 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.7197 0.73209 NaN 1 0 Median 1.0316 0.84929 12.108 2 0 Median 21588000 12636000 8951700 0 0 0 0 0 0 13138000 7821600 5316800 0 0 0 7063700 4066500 2997200 1385700 747960 637710 37232 4171 39135 197270;197271;197272;197273 200590;200591;200592 200592 3 VPYLAVAR NYHPVEDACWKPGQKVPYLAVARTFEKIEE CWKPGQKVPYLAVARTFEKIEEVSARLRMV K V P A R T 2 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 8 0 887.52289 F5GZ28;P18858;M0R0Q7;B4E135 F5GZ28 219 226 LIG1 DNA ligase;DNA ligase 1 yes no 2 0.038988 37.094 By MS/MS By matching 1 1 0.85649 0.78024 37.382 2 Median 0.61744 0.599 NaN 1 0 Median 1.1881 1.0163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5858500 3258900 2599600 3505100 2128700 1376400 2353400 1130200 1223300 0 0 0 0 0 0 0 0 0 0 0 0 37233 1014 39136 197274;197275 200593 200593 1 VQAAVGTSAAPVPSDNH LVEDMQRQWAGLVEKVQAAVGTSAAPVPSD AAVGTSAAPVPSDNH_______________ K V Q N H - 4 0 1 1 0 1 0 1 1 0 0 0 0 0 2 2 1 0 0 3 0 0 17 0 1619.7903 P02649 P02649 301 317 APOE Apolipoprotein E yes yes 2 4.8845E-05 62.466 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1121100 0 0 1121100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37234 1835 39137 197276 200594 200594 1 VQADVPPEILNNVGALHFR ALSAYGTATRILQEKVQADVPPEILNNVGA VPPEILNNVGALHFRLGNLGEAKKYFLASL K V Q F R L 2 1 2 1 0 1 1 1 1 1 2 0 0 1 2 0 0 0 0 3 0 0 19 0 2088.1116 Q6PD62 Q6PD62 445 463 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 3 3.0412E-08 64.507 By matching By MS/MS By MS/MS 1 1 1 0.72695 0.79944 27.088 3 Median 0.52528 0.51362 NaN 1 0 Median 0.99076 0.84007 NaN 1 0 Median 0.72695 0.79944 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15234000 8388800 6844700 2742700 1446900 1295800 4015900 2138400 1877600 8474900 4803600 3671300 0 0 0 0 0 0 0 0 0 37235 3168 39138 197277;197278;197279 200595;200596;200597;200598 200596 4 VQAFGWSLPQK QYRQVKAHVQKEDGRVQAFGWSLPQKYKQV EDGRVQAFGWSLPQKYKQVTNGQGENKMKN R V Q Q K Y 1 0 0 0 0 2 0 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 11 0 1259.6663 A0A087X2D8;O60271 A0A087X2D8 634 644 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2 0.0007518 63.283 By MS/MS By matching 2 1 1.0147 0.97281 7.9849 3 Median 0.96415 0.94477 4.1371 2 0 Median 1.2285 1.0745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14415000 7378000 7037100 14114000 7246800 6867100 301120 131190 169920 0 0 0 0 0 0 0 0 0 0 0 0 37236 134 39139 197280;197281;197282 200599;200600;200601 200600 3 VQAGDVITIDK YDLGTKMIESLTKDKVQAGDVITIDKATGK TKDKVQAGDVITIDKATGKISKLGRSFTRA K V Q D K A 1 0 0 2 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1157.6292 Q9Y230;M0R0Y3 Q9Y230 187 197 RUVBL2 RuvB-like 2 yes no 2 0.00041805 70.1 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 2 2 1 1 1.3837 1.2292 18.46 8 Median 1.3151 1.2208 NaN 1 0 Median 1.4559 1.2376 NaN 1 0 Median 1.2513 1.2344 28.136 2 0 Median 1.2506 1.0975 1.3813 2 0 Median 1.862 1.7761 NaN 1 0 Median 1.5513 1.3019 NaN 1 0 Median 77002000 33884000 43119000 11333000 4476700 6856800 6145000 2537500 3607500 33181000 16033000 17148000 21165000 9026600 12138000 3553000 1215000 2338000 1624900 594830 1030100 37237 4368 39140 197283;197284;197285;197286;197287;197288;197289;197290 200602;200603;200604;200605;200606;200607;200608;200609 200608 8 VQAINVSSR SSEGVKGAKSFFEAKVQAINVSSRFEEEIK SFFEAKVQAINVSSRFEEEIKAEQEERKKQ K V Q S R F 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 972.53524 Q96C19 Q96C19 198 206 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.0032081 66.692 By MS/MS By MS/MS 1 1 1.2685 1.1257 9.2518 2 Median 1.2801 1.2019 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2571 1.0545 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6888200 2992500 3895600 6155200 2652900 3502300 0 0 0 0 0 0 732980 339650 393330 0 0 0 0 0 0 37238 3613 39141 197291;197292 200610;200611 200610 2 VQALEEANNDLENK TMQELNSRLASYLDKVQALEEANNDLENKI KVQALEEANNDLENKIQDWYDKKGPAAIQK K V Q N K I 2 0 3 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1585.7584 P35527;CON__P35527 P35527 171 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 8.4604E-45 186.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 11 11 14 5 5 0.034595 0.030879 118.45 35 Median 0.045906 0.042602 61.246 3 3 Median 0.029471 0.025787 78.868 3 3 Median 0.067664 0.064381 129.83 9 9 Median 0.025697 0.023146 115.01 13 13 Median 0.17884 0.18284 62.522 3 3 Median 0.041332 0.033895 72.714 4 4 Median 869720000 854360000 15362000 60381000 59438000 942820 166120000 164210000 1904300 137210000 132360000 4852800 381860000 377450000 4415600 71369000 68980000 2388900 52777000 51919000 857260 + 37239 2242 39142 197293;197294;197295;197296;197297;197298;197299;197300;197301;197302;197303;197304;197305;197306;197307;197308;197309;197310;197311;197312;197313;197314;197315;197316;197317;197318;197319;197320;197321;197322;197323;197324;197325;197326;197327;197328;197329;197330;197331;197332;197333;197334;197335;197336;197337;197338;197339;197340;197341;197342;197343;197344;197345 200612;200613;200614;200615;200616;200617;200618;200619;200620;200621;200622;200623;200624;200625;200626;200627;200628;200629;200630;200631;200632;200633;200634;200635;200636;200637;200638;200639;200640;200641;200642;200643;200644;200645;200646;200647;200648;200649;200650;200651;200652;200653;200654;200655;200656;200657;200658;200659;200660;200661;200662;200663;200664;200665;200666;200667;200668;200669 200635 58 VQALEEANNDLENKIQDWYDK TMQELNSRLASYLDKVQALEEANNDLENKI ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K V Q D K K 2 0 3 3 0 2 3 0 0 1 2 2 0 0 0 0 0 1 1 1 0 0 21 1 2534.1925 P35527;CON__P35527 P35527 171 191 KRT9 Keratin, type I cytoskeletal 9 yes no 3 8.7214E-08 63.578 By MS/MS By MS/MS By MS/MS 2 1 2 0.10627 0.11526 52.236 5 Median 0.10849 0.11619 1.1376 2 2 Median 0.079416 0.075671 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.063088 0.071609 91.056 2 2 Median NaN NaN NaN 0 0 Median 20591000 19384000 1207000 5768500 5289600 478890 5416900 5223800 193040 0 0 0 0 0 0 9405500 8870400 535100 0 0 0 + 37240 2242 39143 197346;197347;197348;197349;197350 200670;200671;200672;200673;200674 200674 5 VQALEEANNDLENKIQDWYDKK TMQELNSRLASYLDKVQALEEANNDLENKI NNDLENKIQDWYDKKGPAAIQKNYSPYYNT K V Q K K G 2 0 3 3 0 2 3 0 0 1 2 3 0 0 0 0 0 1 1 1 0 0 22 2 2662.2875 P35527;CON__P35527 P35527 171 192 KRT9 Keratin, type I cytoskeletal 9 yes no 4 2.0637E-05 55.127 By MS/MS By MS/MS By MS/MS 1 1 3 0.038729 0.043931 103.84 2 Median 0.017846 0.02108 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.084048 0.091553 NaN 1 1 Median NaN NaN NaN 0 0 Median 32742000 32096000 645920 6146300 5984000 162240 0 0 0 0 0 0 4654200 4654200 0 21941000 21457000 483680 0 0 0 + 37241 2242 39144 197351;197352;197353;197354;197355 200675;200676;200677;200678;200679 200675 5 VQAMQISSEKEEDDNEKR WKELEQKEVDYSGLRVQAMQISSEKEEDDN MQISSEKEEDDNEKRQDPGDNWEEGGGGGG R V Q K R Q 1 1 1 2 0 2 4 0 0 1 0 2 1 0 0 2 0 0 0 1 0 0 18 2 2134.9801 Q9UKY7;H0Y8K3 Q9UKY7 100 117 CDV3 Protein CDV3 homolog yes no 4 0.0032814 26.146 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.0134 1.0137 12.848 5 Median 0.93896 0.99413 NaN 1 0 Median 1.1291 1.3496 NaN 1 0 Median 0.99233 1.1238 NaN 1 0 Median 1.027 1.0121 0.21838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3967300 1807600 2159700 406380 206480 199900 399530 163540 235990 1585800 733700 852100 1575600 703830 871740 0 0 0 0 0 0 37242 4318 39145 197356;197357;197358;197359;197360 200680;200681;200682 200680 3 VQANLGAPDINIEGLDAK DISVPKIEGDLKGPKVQANLGAPDINIEGL NLGAPDINIEGLDAKVKTPSFGISAPQVSI K V Q A K V 3 0 2 2 0 1 1 2 0 2 2 1 0 0 1 0 0 0 0 1 0 0 18 0 1836.9581 Q09666 Q09666 5164 5181 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.4387E-15 162.93 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 4 3 1 1 0.97107 0.86473 18.018 11 Median 0.96476 0.96906 NaN 1 0 Median 1.0029 0.89214 NaN 1 0 Median 0.84313 0.91349 30.991 4 1 Median 0.98287 0.844 6.81 3 0 Median 0.8264 0.86473 NaN 1 0 Median 0.89094 0.77377 NaN 1 0 Median 142460000 69731000 72729000 60546000 29638000 30907000 15570000 7329700 8240100 53146000 26005000 27142000 5868400 2842100 3026300 7163000 3826200 3336800 167480 90335 77141 37243 2749 39146 197361;197362;197363;197364;197365;197366;197367;197368;197369;197370;197371 200683;200684;200685;200686;200687;200688;200689;200690;200691;200692;200693;200694;200695;200696 200684 14 VQAQGHTLQVAGLR EVELSARRLRAWGARVQAQGHTLQVAGLRG RVQAQGHTLQVAGLRGPVLRLREPLGVLAV R V Q L R G 2 1 0 0 0 3 0 2 1 0 2 0 0 0 0 0 1 0 0 2 0 0 14 0 1476.8161 Q8IZ83;F5H4B6 Q8IZ83 638 651 ALDH16A1 Aldehyde dehydrogenase family 16 member A1 yes no 3 0.00011804 70.412 By MS/MS By MS/MS 1 1 1.0749 0.97224 12.51 2 Median 0.94064 0.88993 NaN 1 0 Median 1.2282 1.0622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18984000 8906200 10077000 12924000 6349300 6574600 6059800 2556900 3502900 0 0 0 0 0 0 0 0 0 0 0 0 37244 3348 39147 197372;197373 200697;200698;200699;200700 200698 4 VQAQGPGLK SPFKVAVTEGCQPSRVQAQGPGLKEAFTNK GCQPSRVQAQGPGLKEAFTNKPNVFTVVTR R V Q L K E 1 0 0 0 0 2 0 2 0 0 1 1 0 0 1 0 0 0 0 1 0 0 9 0 896.50797 O75369;E7EN95 O75369 1331 1339 FLNB Filamin-B yes no 2 0.056984 29.149 By matching By MS/MS By matching 1 2 1 1.0426 0.91136 25.012 4 Median 1.4888 1.4535 NaN 1 0 Median 1.0426 0.91136 3.7811 2 0 Median 0.76477 0.84289 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2483500 1268500 1215000 180220 78814 101410 1927400 948050 979380 375850 241630 134220 0 0 0 0 0 0 0 0 0 37245 1664 39148 197374;197375;197376;197377 200701 200701 1 VQAQLNTEQLLDDVVAKR KDTRQATFLFRRGLKVQAQLNTEQLLDDVV QLNTEQLLDDVVAKRTRQWRTSTTNGGILT K V Q K R T 2 1 1 2 0 3 1 0 0 0 3 1 0 0 0 0 1 0 0 3 0 0 18 1 2039.1011 Q96QD9;H9KVC6 Q96QD9 199 216 FYTTD1 UAP56-interacting factor yes no 3 2.7475E-16 110.22 By MS/MS By MS/MS 1 1 0.84548 0.83306 13.833 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84367 0.91867 NaN 1 0 Median 0.8473 0.75544 NaN 1 0 Median 15283000 7873100 7410000 0 0 0 0 0 0 0 0 0 0 0 0 10558000 5717800 4840500 4724900 2155300 2569600 37246 3720 39149 197378;197379 200702;200703;200704 200703 3 VQAQVIQETIVPK MQQQQQTTQQQLPQKVQAQVIQETIVPKEP QKVQAQVIQETIVPKEPPPEFEFIADPPSI K V Q P K E 1 0 0 0 0 3 1 0 0 2 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1451.8348 Q15459 Q15459 132 144 SF3A1 Splicing factor 3A subunit 1 yes yes 2 4.6534E-05 89.171 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 4 5 1 1.0082 0.94936 25.754 14 Median 1.0593 1.0197 NaN 1 1 Median 2.5026 2.2353 NaN 1 0 Median 1.005 1.0683 9.62 2 0 Median 1.0669 0.93397 5.7479 4 0 Median 0.86204 0.86945 11.16 5 0 Median 1.3054 1.0959 NaN 1 0 Median 282430000 142090000 140340000 25433000 12054000 13378000 1162900 469990 692910 116650000 57900000 58749000 31064000 15482000 15581000 105800000 55078000 50725000 2318900 1103500 1215400 37247 2954 39150 197380;197381;197382;197383;197384;197385;197386;197387;197388;197389;197390;197391;197392;197393 200705;200706;200707;200708;200709;200710;200711;200712;200713;200714;200715;200716;200717;200718;200719;200720;200721;200722;200723;200724 200712 20 VQASLAANTFTITGHAETK MFTNQGTVIHFNNPKVQASLAANTFTITGH LAANTFTITGHAETKQLTEMLPSILNQLGA K V Q T K Q 4 0 1 0 0 1 1 1 1 1 1 1 0 1 0 1 4 0 0 1 0 0 19 0 1959.0062 D6RDG3;H0Y9Y1;P20290 P20290 123 141 BTF3 Transcription factor BTF3 no no 2;3 4.2435E-18 145.29 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 3 2 1.0473 0.9138 42.645 14 Median 1.1527 1.0819 7.3974 4 0 Median 1.0213 0.87109 3.1326 3 0 Plateau 1.0445 1.0081 14.362 2 0 Median 1.0301 0.85463 81.495 3 1 Median NaN NaN NaN 0 0 Median 1.2936 1.0532 19.601 2 0 Median 228480000 108000000 120480000 140480000 64003000 76478000 57229000 28425000 28805000 8401400 3447600 4953800 20672000 11416000 9256100 0 0 0 1700200 714170 986050 37248 2076;821 39151 197394;197395;197396;197397;197398;197399;197400;197401;197402;197403;197404;197405;197406;197407 200725;200726;200727;200728;200729;200730;200731;200732;200733;200734;200735;200736;200737;200738 200736 14 VQAVDAVAAELAAER KHEAIETDIVAYSGRVQAVDAVAAELAAER VQAVDAVAAELAAERYHDIKRIAARQHNVA R V Q E R Y 6 1 0 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 15 0 1511.7944 O15020;A4QPE4 O15020 481 495 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 2 1.7035E-06 94.191 By MS/MS By MS/MS 1 1 0.96582 0.92355 1.4725 2 Median NaN NaN NaN 0 0 Median 1.0909 0.91398 NaN 1 0 Median 0.85508 0.93322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16900000 8827100 8072600 0 0 0 5823000 2841700 2981300 11077000 5985300 5091300 0 0 0 0 0 0 0 0 0 37249 1512 39152 197408;197409 200739;200740;200741;200742 200740 4 VQAVVAVAR KHEAIETDIAAYEERVQAVVAVARELEAEN AAYEERVQAVVAVARELEAENYHDIKRITA R V Q A R E 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 911.55525 Q01082;A0A087WUZ3;F8W6C1 Q01082 478 486 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.00043403 128.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 3 2 2 1.1298 0.99921 13.526 13 Median 1.1623 1.1274 3.8096 2 1 Median 1.2517 0.99921 6.9686 3 0 Median 0.8064 0.879 NaN 1 0 Median 1.0898 0.96214 17.987 3 0 Median 1.1215 1.1596 0.98046 2 0 Median 1.1222 0.91452 0.65414 2 0 Median 187570000 86129000 101440000 12925000 5555000 7370200 72475000 31672000 40802000 31278000 16378000 14900000 13449000 6155000 7294100 28856000 13648000 15208000 28585000 12721000 15864000 37250 2681 39153 197410;197411;197412;197413;197414;197415;197416;197417;197418;197419;197420;197421;197422 200743;200744;200745;200746;200747;200748;200749;200750;200751;200752;200753;200754;200755;200756;200757;200758;200759;200760 200745 18 VQAWYMDDAPGDPR ______________________________ MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQ M V Q P R Q 2 1 0 3 0 1 0 1 0 0 0 0 1 0 2 0 0 1 1 1 0 0 14 0 1619.7038 Q9BV57 Q9BV57 2 15 ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase yes yes 2 0.0005061 68.551 By MS/MS 1 0.79854 0.79045 NaN 1 Median 0.79854 0.79045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4984100 2796100 2188000 4984100 2796100 2188000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37251 3846 39154 197423 200761 200761 1 VQDAFISYR QSWYFLGRCYSSIGKVQDAFISYRQSIDKS YSSIGKVQDAFISYRQSIDKSEASADTWCS K V Q Y R Q 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 9 0 1097.5506 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248 O15550 300 308 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 2 0.000491 99.802 By MS/MS 1 0.38371 0.42182 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38371 0.42182 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19827000 15191000 4635900 0 0 0 0 0 0 19827000 15191000 4635900 0 0 0 0 0 0 0 0 0 37252 111 39155 197424 200762 200762 1 VQDDEVGDGTTSVTVLAAELLR GVDNPAAKVLVDMSRVQDDEVGDGTTSVTV DGTTSVTVLAAELLREAESLIAKKIHPQTI R V Q L R E 2 1 0 3 0 1 2 2 0 0 3 0 0 0 0 1 3 0 0 4 0 0 22 0 2287.1543 P78371;F5GWF6;F8VQ14 P78371 90 111 CCT2 T-complex protein 1 subunit beta yes no 2;3 1.675E-25 133.45 By MS/MS By MS/MS By MS/MS By matching 4 4 2 2 1.1219 0.99822 15.028 12 Median 0.98092 0.95121 15.148 4 0 Median 1.1357 0.99214 4.9042 4 0 Median 1.2254 1.279 7.6745 2 0 Median 1.026 0.90743 12.136 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29637000 13234000 16403000 14926000 6783500 8142800 7792300 3527100 4265200 6764800 2849100 3915700 153640 74005 79636 0 0 0 0 0 0 37253 2644 39156 197425;197426;197427;197428;197429;197430;197431;197432;197433;197434;197435;197436 200763;200764;200765;200766;200767;200768;200769;200770;200771;200772;200773;200774 200764 12 VQDGKPVILLFR PSGERLAVLMKGKPRVQDGKPVILLFRTRN KPRVQDGKPVILLFRTRNSPVFELLPCGII R V Q F R T 0 1 0 1 0 1 0 1 0 1 2 1 0 1 1 0 0 0 0 2 0 0 12 1 1383.8238 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 421 432 AAAS Aladin yes no 3 0.003076 37.426 By matching By MS/MS By matching 1 1 1 1.0294 1.1525 45.848 3 Median NaN NaN NaN 0 0 Median 0.59516 0.54077 NaN 1 0 Median 1.0294 1.1525 NaN 1 0 Median 1.3174 1.2363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7536600 3036600 4500000 0 0 0 287800 164660 123140 7095100 2809300 4285700 153770 62621 91145 0 0 0 0 0 0 37254 4082 39157 197437;197438;197439 200775 200775 1 VQDHSKAEDEWKAQVAR ALASAQRELAAFRTKVQDHSKAEDEWKAQV DHSKAEDEWKAQVARGRQEAERKNSLISSL K V Q A R G 3 1 0 2 0 2 2 0 1 0 0 2 0 0 0 1 0 1 0 2 0 0 17 2 1995.9763 A0A087WY61;Q14980 Q14980 1199 1215 NUMA1 Nuclear mitotic apparatus protein 1 no no 4 0.028754 15.155 By MS/MS 1 0.71275 0.94166 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71275 0.94166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2810600 1664200 1146400 0 0 0 0 0 0 2810600 1664200 1146400 0 0 0 0 0 0 0 0 0 37255 2905;77 39158 197440 200776 200776 1 VQDIEQLK PYTIHLLAHDPDYVKVQDIEQLKDVKECLW HDPDYVKVQDIEQLKDVKECLWFVLEILMA K V Q L K D 0 0 0 1 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 971.52876 Q9NTI5 Q9NTI5 1008 1015 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.023122 44.395 By MS/MS By MS/MS 1 1 1.1287 1.1659 8.8533 2 Median 1.2904 1.2412 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9873 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29782000 13512000 16270000 21995000 9463400 12532000 0 0 0 7786400 4048700 3737700 0 0 0 0 0 0 0 0 0 37256 4107 39159 197441;197442 200777;200778 200777 2 VQDLIEGHLTASQ GPENCSSSNEIILSRVQDLIEGHLTASQ__ SRVQDLIEGHLTASQ_______________ R V Q S Q - 1 0 0 1 0 2 1 1 1 1 2 0 0 0 0 1 1 0 0 1 0 0 13 0 1409.7151 Q8WXD5 Q8WXD5 155 167 GEMIN6 Gem-associated protein 6 yes yes 2 7.5018E-05 100.88 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9295100 0 0 0 0 0 9295100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37257 3517 39160 197443 200779 200779 1 VQDLSAGGQGSLTDSGPER LCRALQTERNDLNKRVQDLSAGGQGSLTDS SAGGQGSLTDSGPERRPEGPGAQAPSSPRV R V Q E R R 1 1 0 2 0 2 1 4 0 0 2 0 0 0 1 3 1 0 0 1 0 0 19 0 1872.8813 P40222 P40222 485 503 TXLNA Alpha-taxilin yes yes 2;3 3.0776E-38 200.44 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 2 6 1 0.90839 0.80743 15.728 12 Median 0.70464 0.68237 5.5403 2 0 Median 0.89295 0.77497 NaN 1 0 Median 0.84299 0.87014 10.653 2 0 Median 0.99412 0.83269 18.6 6 2 Median NaN NaN NaN 0 0 Median 0.81979 0.66733 NaN 1 0 Median 77787000 39051000 38736000 10893000 5786300 5106600 3133500 1554000 1579500 19999000 10117000 9881900 42482000 20944000 21539000 0 0 0 1279100 649710 629390 37258 2284 39161 197444;197445;197446;197447;197448;197449;197450;197451;197452;197453;197454;197455 200780;200781;200782;200783;200784;200785;200786;200787;200788;200789;200790;200791;200792;200793 200783 14 VQDNFDKIEFNR NQGYMPYLNRFILEKVQDNFDKIEFNRMCW LEKVQDNFDKIEFNRMCWTLCVKKNLTKNP K V Q N R M 0 1 2 2 0 1 1 0 0 1 0 1 0 2 0 0 0 0 0 1 0 0 12 1 1523.7369 Q9UH65 Q9UH65 81 92 SWAP70 Switch-associated protein 70 yes yes 3 0.0035551 54.343 By MS/MS 1 1.0183 1.0209 NaN 1 Median 1.0183 1.0209 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15531000 7825200 7705900 15531000 7825200 7705900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37259 4270 39162 197456 200794 200794 1 VQDTEISLQQQQQHLQLR QQVVEYDEFTTLMNKVQDTEISLQQQQQHL TEISLQQQQQHLQLRLKSPEERAGNQSMIA K V Q L R L 0 1 0 1 0 7 1 0 1 1 3 0 0 0 0 1 1 0 0 1 0 0 18 0 2191.1345 Q8WXH0;G3V5X4;A0A0A0MRE3 Q8WXH0 2635 2652 SYNE2 Nesprin-2 yes no 3 7.1778E-16 150.59 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.195 1.0009 28.538 5 Median 0.72322 0.70495 NaN 1 0 Median 1.8898 1.5585 NaN 1 0 Median 0.8914 0.93016 NaN 1 0 Median 1.2059 1.0505 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.195 1.0009 NaN 1 0 Median 74479000 37633000 36846000 15602000 8837000 6765000 7683800 2116800 5567100 46306000 24577000 21729000 3910000 1658900 2251100 0 0 0 976540 443020 533520 37260 3521 39163 197457;197458;197459;197460;197461 200795;200796;200797;200798;200799;200800;200801 200797 6 VQDTSNTGLGEDIIHQLSK KESEDSDEENDFTEKVQDTSNTGLGEDIIH SNTGLGEDIIHQLSKSEEKELRKFRKIDYS K V Q S K S 0 0 1 2 0 2 1 2 1 2 2 1 0 0 0 2 2 0 0 1 0 0 19 0 2054.028 Q8IWA0 Q8IWA0 792 810 WDR75 WD repeat-containing protein 75 yes yes 3 9.8756E-07 52.185 By matching By MS/MS By matching 1 1 2 1.1887 1.1017 30.89 4 Median 1.7836 1.6808 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96245 1.0303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1887 0.97148 27.27 2 0 Median 20545000 10667000 9878600 7706400 4142700 3563700 0 0 0 8719400 4350000 4369400 0 0 0 0 0 0 4119600 2174100 1945500 37261 3322 39164 197462;197463;197464;197465 200802;200803 200803 2 VQDVFSSTHSLLHYFDR DFAEAHYLSYLNNLRVQDVFSSTHSLLHYF DVFSSTHSLLHYFDRLILTGAESKSNGEEG R V Q D R L 0 1 0 2 0 1 0 0 2 0 2 0 0 2 0 3 1 0 1 2 0 0 17 0 2049.9908 F5H0F9;Q9UJX4;F5GY68;H0YFB5 F5H0F9 264 280 ANAPC5 Anaphase-promoting complex subunit 5 yes no 3 0.00012671 42.647 By matching By matching By MS/MS By matching 1 1 1 1 1.0799 1.0058 7.474 4 Median 1.0441 1.042 NaN 1 0 Median 1.1878 1.0799 NaN 1 0 Median 0.92082 0.97077 NaN 1 0 Median 1.117 0.91306 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5386100 2820800 2565400 662180 315220 346960 784090 392400 391680 3896600 2093300 1803400 43248 19885 23363 0 0 0 0 0 0 37262 1019 39165 197466;197467;197468;197469 200804;200805 200804 2 VQEAARPEEVVSQTPLLR VAPAGKEDSPSASGRVQEAARPEEVVSQTP AARPEEVVSQTPLLRSRALVKRVTWNLQES R V Q L R S 2 2 0 0 0 2 3 0 0 0 2 0 0 0 2 1 1 0 0 3 0 0 18 1 2021.0906 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6 A0A0J9YX88 1378 1395 PHRF1 PHD and RING finger domain-containing protein 1 yes no 3 0.00081093 32.858 By MS/MS 1 0.66454 0.80822 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66454 0.80822 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7644600 3817500 3827100 0 0 0 0 0 0 7644600 3817500 3827100 0 0 0 0 0 0 0 0 0 37263 288 39166 197470 200806 200806 1 VQEAVESMVK ______________________________ LQQLRVQEAVESMVKSLERENIRKMQGLMF R V Q V K S 1 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 10 0 1118.5642 Q96C01;E7EQY1;C9J2Y4 Q96C01 9 18 FAM136A Protein FAM136A yes no 2 0.0059732 64.654 By MS/MS 1 1.0039 0.94675 NaN 1 Median 1.0039 0.94675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15542000 7907700 7634100 15542000 7907700 7634100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37264 3612 39167 197471 200807 200807 1 VQEDEFR NWTDASRVDGVVLEKVQEDEFRYRMYQTQV VDGVVLEKVQEDEFRYRMYQTQVSDAGLYR K V Q F R Y 0 1 0 1 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 921.41921 Q9P2B2 Q9P2B2 633 639 PTGFRN Prostaglandin F2 receptor negative regulator yes yes 2 0.0054124 97.068 By MS/MS 1 0.95147 0.81354 NaN 1 Median NaN NaN NaN 0 0 Median 0.95147 0.81354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2606800 1161500 1445300 0 0 0 2606800 1161500 1445300 0 0 0 0 0 0 0 0 0 0 0 0 37265 4219 39168 197472 200808 200808 1 VQEETTLVDDPFQMK RPNGVSAVALLVGEKVQEETTLVDDPFQMK VQEETTLVDDPFQMKTGGMVDMKKLKERGK K V Q M K T 0 0 0 2 0 2 2 0 0 0 1 1 1 1 1 0 2 0 0 2 0 0 15 0 1778.8397 Q9NZ63 Q9NZ63 58 72 C9orf78 Uncharacterized protein C9orf78 yes yes 2 0.0057611 34.755 By matching By MS/MS By matching 1 1 1 0.93268 0.8925 24.488 3 Median 1.1426 1.1368 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93268 0.8925 NaN 1 0 Median 0.82617 0.69661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5974500 3221900 2752600 1813300 973960 839310 0 0 0 3981200 2159600 1821600 180000 88268 91733 0 0 0 0 0 0 37266 4185 39169 197473;197474;197475 200809;200810 200810 2 VQEFDSGLLHWR KNDPFVVDCSDKLGRVQEFDSGLLHWRIGG LGRVQEFDSGLLHWRIGGGDTTEHIQTHFE R V Q W R I 0 1 0 1 0 1 1 1 1 0 2 0 0 1 0 1 0 1 0 1 0 0 12 0 1485.7365 O14497;H0Y488;A0A1B0GTU5 O14497 1834 1845 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 0.00014719 75.695 By MS/MS By matching By matching By matching 4 3 1 1 1.0824 1.1282 12.307 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0013 1.083 12.613 4 0 Median 1.3644 1.1662 3.7639 3 0 Median 1.0824 1.1534 NaN 1 0 Median 1.0241 0.86748 NaN 1 0 Median 18656000 8948100 9707400 0 0 0 0 0 0 17146000 8266500 8879900 409410 156650 252760 1015700 488790 526960 83942 36127 47815 37267 1480 39170 197476;197477;197478;197479;197480;197481;197482;197483;197484 200811;200812;200813;200814 200811 4 VQEFEHVNGR HVLTRIGVMSLIRKKVQEFEHVNGRWSMPE LIRKKVQEFEHVNGRWSMPELAEVEENKKM K V Q G R W 0 1 1 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1213.584 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1506 1515 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.0030763 48.796 By MS/MS By MS/MS By MS/MS 1 2 1 1.0335 1.0205 16.556 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97442 1.0814 NaN 1 0 Median 1.1929 1.0461 11.69 2 0 Median NaN NaN NaN 0 0 Median 0.93673 0.78303 NaN 1 0 Median 3575500 1733100 1842400 0 0 0 0 0 0 1928100 958100 970030 1015700 416730 599020 0 0 0 631580 358270 273310 37268 246 39171 197485;197486;197487;197488 200815;200816;200817;200818;200819;200820;200821 200815 7 VQEGETIEDGAR KRGFGAGRWNGFGGKVQEGETIEDGARREL GGKVQEGETIEDGARRELQEESGLTVDALH K V Q A R R 1 1 0 1 0 1 3 2 0 1 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1302.6052 P36639 P36639 80 91 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes yes 2 5.4737E-06 98.943 By MS/MS By MS/MS By MS/MS 1 1 2 1.0917 1.0188 8.0693 4 Median 1.0565 1.0261 NaN 1 0 Median 1.2174 1.0115 NaN 1 0 Median 0.98967 0.96287 12.746 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13912000 6633300 7279100 10989000 5215300 5773400 1540300 704010 836310 1383300 713980 669370 0 0 0 0 0 0 0 0 0 37269 2261 39172 197489;197490;197491;197492 200822;200823;200824;200825;200826 200823 5 VQEGETIEDGARR KRGFGAGRWNGFGGKVQEGETIEDGARREL GKVQEGETIEDGARRELQEESGLTVDALHK K V Q R R E 1 2 0 1 0 1 3 2 0 1 0 0 0 0 0 0 1 0 0 1 0 0 13 1 1458.7063 P36639 P36639 80 92 NUDT1 7,8-dihydro-8-oxoguanine triphosphatase yes yes 3 0.0020465 36.982 By MS/MS By MS/MS 1 1 1.4344 1.4046 26.893 2 Median 1.108 1.1614 NaN 1 0 Median 1.857 1.6989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8921500 3917100 5004400 6816000 3192400 3623600 2105500 724780 1380700 0 0 0 0 0 0 0 0 0 0 0 0 37270 2261 39173 197493;197494 200827;200828;200829 200828 3 VQEIVGALR STLMKATVLMRQPGRVQEIVGALRKGGGDR MRQPGRVQEIVGALRKGGGDRLQVISDFDM R V Q L R K 1 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 983.57638 Q969T7;E5RJR6;C9J758 Q969T7 21 29 NT5C3B 7-methylguanosine phosphate-specific 5-nucleotidase yes no 2 0.0022552 73.26 By MS/MS 1 0.90205 0.84471 NaN 1 Median 0.90205 0.84471 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13673000 7019100 6653700 13673000 7019100 6653700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37271 3588 39174 197495 200830 200830 1 VQEIVGALRK STLMKATVLMRQPGRVQEIVGALRKGGGDR RQPGRVQEIVGALRKGGGDRLQVISDFDMT R V Q R K G 1 1 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 10 1 1111.6713 Q969T7;E5RJR6;C9J758 Q969T7 21 30 NT5C3B 7-methylguanosine phosphate-specific 5-nucleotidase yes no 2 0.0070573 51.346 By MS/MS 1 1.1 1.0932 NaN 1 Median 1.1 1.0932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3122800 1616100 1506700 3122800 1616100 1506700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37272 3588 39175 197496 200831;200832 200831 2 VQELGHGCAALVTK VAAENEEIGSHIKHRVQELGHGCAALVTKA RVQELGHGCAALVTKAGALQCSPSDAYTKK R V Q T K A 2 0 0 0 1 1 1 2 1 0 2 1 0 0 0 0 1 0 0 2 0 0 14 0 1481.766 Q9Y490 Q9Y490 1920 1933 TLN1 Talin-1 yes yes 2;3 9.3194E-08 98.407 By MS/MS 3 1.2843 1.1573 9.1837 3 Median NaN NaN NaN 0 0 Median 1.2843 1.1573 9.1837 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37785000 16696000 21089000 0 0 0 37785000 16696000 21089000 0 0 0 0 0 0 0 0 0 0 0 0 37273 4441 39176 197497;197498;197499 200833;200834;200835 200835 3 VQELPLAR RVMEEIRNLTVKDFRVQELPLARIKKIMKL LTVKDFRVQELPLARIKKIMKLDEDVKMIS R V Q A R I 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 924.53927 Q5T6K5;Q5T6K7;E9PI99;Q13952;A0A0A0MT00;E9PJA8;E9PQR2 Q5T6K5 40 47 NFYC Nuclear transcription factor Y subunit gamma yes no 2 0.0024447 108.46 By MS/MS By MS/MS 1 2 0.99213 0.8449 2.1477 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7509 0.81994 NaN 1 0 Median 1.0253 0.84983 0.82364 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19449000 10092000 9356800 0 0 0 0 0 0 15818000 8363300 7454500 3631000 1728700 1902300 0 0 0 0 0 0 37274 3091 39177 197500;197501;197502 200836;200837;200838;200839;200840 200838 5 VQELQDKLSPLAQELR VAPLGEEFREGARQKVQELQDKLSPLAQEL QELQDKLSPLAQELRDRARAHVETLRQQLA K V Q L R D 1 1 0 1 0 3 2 0 0 0 4 1 0 0 1 1 0 0 0 1 0 0 16 1 1866.0211 CON__P15497 CON__P15497 157 172 yes yes 3 2.3617E-05 66.335 By MS/MS 1 0.10049 0.10522 NaN 1 Median 0.10049 0.10522 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6601000 6264600 336350 6601000 6264600 336350 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 37275 758 39178 197503 200841 200841 1 VQELQNLLK NVQLEKAQQLSITSKVQELQNLLKGKEEQM LSITSKVQELQNLLKGKEEQMNTMKAVLEE K V Q L K G 0 0 1 0 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 1083.6288 Q86UP2;G3V4Y7;G3V5G2 Q86UP2 862 870 KTN1 Kinectin yes no 2 0.00071942 102.41 By MS/MS By matching By matching By matching 2 1 1 1 1.2522 1.0664 23.115 5 Median 1.2072 1.1707 42.812 2 0 Median 1.2522 1.0664 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3874 1.2607 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1717 1.0099 NaN 1 0 Median 24580000 11381000 13199000 17099000 8176600 8922200 5603900 2402900 3201100 0 0 0 1433300 595430 837870 0 0 0 444080 206460 237610 37276 3280 39179 197504;197505;197506;197507;197508 200842;200843;200844 200842 3 VQELQQGAFGR QRGGLKQLSARNRRRVQELQQGAFGRGARS NRRRVQELQQGAFGRGARSKKGKMRKRM__ R V Q G R G 1 1 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 11 0 1231.6309 Q8TDD1 Q8TDD1 858 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.00011155 122.52 By MS/MS By MS/MS By MS/MS 1 1 1 1.2343 1.2644 13.188 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1419 1.2188 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.246 1.2959 NaN 1 0 Median 1.2343 1.0064 NaN 1 1 Median 11692000 5411100 6280700 0 0 0 0 0 0 5084700 2448800 2635800 0 0 0 5665800 2570400 3095500 941290 391870 549410 37277 3470 39180 197509;197510;197511 200845;200846;200847;200848 200847 4 VQENLLANGVDLVTYITR VAQYMADVLEDSKDKVQENLLANGVDLVTY NLLANGVDLVTYITRFQWDMAKYPIKQSLK K V Q T R F 1 1 2 1 0 1 1 1 0 1 3 0 0 0 0 0 2 0 1 3 0 0 18 0 2017.0844 P21283;E7EV59 P21283 87 104 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 2 1.1181E-12 144.12 By matching By MS/MS By matching 1 1 1 1.4889 1.2757 20.824 3 Plateau 0.8822 0.88452 NaN 1 0 Median 1.4889 1.2757 NaN 1 0 Median 1.2358 1.2614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2433700 1087900 1345800 111240 60660 50579 2025000 888330 1136700 297440 138920 158520 0 0 0 0 0 0 0 0 0 37278 2087 39181 197512;197513;197514 200849;200850 200850 2 VQEQELTR QKANSSATETINKLKVQEQELTRLRIDYER ETINKLKVQEQELTRLRIDYERVSQERTVK K V Q T R L 0 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 1001.5142 P15924 P15924 1530 1537 DSP Desmoplakin yes yes 2 0.013601 52.716 By matching By MS/MS By matching 1 1 2 1.2669 1.0919 17.114 4 Median NaN NaN NaN 0 0 Median 1.1813 1.0473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80208 0.83619 NaN 1 0 Median 1.4151 1.1916 6.4462 2 0 Median 2579800 1158900 1420900 0 0 0 352700 97257 255440 0 0 0 0 0 0 1111600 597170 514420 1115500 464470 651060 37279 2021 39182 197515;197516;197517;197518 200851 200851 1 VQEQLGNDVVEK QKIKIGVVGGSDFEKVQEQLGNDVVEKYDY FEKVQEQLGNDVVEKYDYVFPENGLVAYKD K V Q E K Y 0 0 1 1 0 2 2 1 0 0 1 1 0 0 0 0 0 0 0 3 0 0 12 0 1356.6885 H3BV55;O15305;H3BPH4 H3BV55 25 36 PMM2 Phosphomannomutase;Phosphomannomutase 2 yes no 2 0.00029009 83 By MS/MS By MS/MS 2 1 1.1353 1.0767 19.683 3 Median 1.0585 1.0102 27.344 2 0 Median NaN NaN NaN 0 0 Median 1.1353 1.0767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11494000 5506800 5987700 7395300 3618300 3777000 0 0 0 4099200 1888500 2210600 0 0 0 0 0 0 0 0 0 37280 1240 39183 197519;197520;197521 200852;200853;200854;200855 200852 4 VQEQVHTLLSQDQAQAAR RSVGELPSTVESLQKVQEQVHTLLSQDQAQ QVHTLLSQDQAQAARLPPQDFLDRLSSLDN K V Q A R L 3 1 0 1 0 5 1 0 1 0 2 0 0 0 0 1 1 0 0 2 0 0 18 0 2021.029 Q07065 Q07065 506 523 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 9.1229E-146 288.77 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 3 3 2 2 1.533 1.4633 23.879 18 Median 1.0392 0.96721 3.5592 3 0 Median 1.4631 1.2936 11.26 5 1 Median 1.3426 1.4066 11.855 3 0 Median 2.1629 1.8211 7.6212 3 0 Median 1.7102 1.7548 13.754 2 0 Median 2.2252 1.8597 14.148 2 0 Median 517840000 226730000 291110000 324820000 151250000 173580000 73748000 28578000 45170000 78390000 33980000 44410000 21039000 6607800 14431000 12507000 4230900 8275600 7330600 2082200 5248400 37281 2730 39184 197522;197523;197524;197525;197526;197527;197528;197529;197530;197531;197532;197533;197534;197535;197536;197537;197538;197539 200856;200857;200858;200859;200860;200861;200862;200863;200864;200865;200866;200867;200868;200869;200870;200871;200872;200873;200874;200875;200876;200877 200862 21 VQESADELQK TQGLIFVVDSNDRERVQESADELQKMLQED NDRERVQESADELQKMLQEDELRDAVLLVF R V Q Q K M 1 0 0 1 0 2 2 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1145.5564 P84085;C9J1Z8 P84085 100 109 ARF5 ADP-ribosylation factor 5 yes no 2 0.012347 41.448 By matching By MS/MS By matching By matching 1 1 1 1 1.2342 1.0581 11.802 4 Median 0.93953 0.88839 NaN 1 0 Median 1.2876 1.1058 NaN 1 0 Median 1.2107 1.1631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2581 1.0125 NaN 1 0 Median 9898000 4628800 5269100 4011000 1959100 2052000 4123000 1880800 2242200 1588300 714070 874260 0 0 0 0 0 0 175630 74877 100750 37282 2665 39185 197540;197541;197542;197543 200878 200878 1 VQEVLLK IEQVILVGGATRVPRVQEVLLKAVGKEELG GGATRVPRVQEVLLKAVGKEELGKNINADE R V Q L K A 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 7 0 827.51165 A0A087X054;A0A494C039;Q9Y4L1;E9PJ21;A0A087WWI4;K7EQK2 A0A087X054 392 398 HYOU1 Hypoxia up-regulated protein 1 yes no 2 0.0022148 108.24 By matching By MS/MS 1 1 1.0876 0.9961 0.12726 2 Median 1.0021 0.99521 NaN 1 0 Median 1.1805 0.997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17851000 8435400 9415500 2318500 1236800 1081600 15532000 7198600 8333900 0 0 0 0 0 0 0 0 0 0 0 0 37283 101 39186 197544;197545 200879;200880 200880 2 VQFGNENTKLELR KPNFNRTNSPGFQKKVQFGNENTKLELRKV KKVQFGNENTKLELRKVPPELNNISKLNEH K V Q L R K 0 1 2 0 0 1 2 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 13 1 1546.8104 Q5T8P6 Q5T8P6 525 537 RBM26 RNA-binding protein 26 no no 3 3.7738E-05 94.688 By MS/MS 1 1.3525 1.5334 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3525 1.5334 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15927000 6741300 9185300 0 0 0 0 0 0 15927000 6741300 9185300 0 0 0 0 0 0 0 0 0 37284 3097 39187 197546 200881 200881 1 VQFGVLSPDELKR PPSGDSACPLRTIKRVQFGVLSPDELKRMS KRVQFGVLSPDELKRMSVTEGGIKYPETTE R V Q K R M 0 1 0 1 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 13 1 1486.8144 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 21 33 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.0092007 41.644 By MS/MS 1 0.46582 0.55845 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46582 0.55845 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8914100 5484300 3429800 0 0 0 0 0 0 8914100 5484300 3429800 0 0 0 0 0 0 0 0 0 37285 486 39188 197547 200882 200882 1 VQFGVMTR RAPDWVDAEECHRCRVQFGVMTRKHHCRAC EECHRCRVQFGVMTRKHHCRACGQIFCGKC R V Q T R K 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 2 0 0 8 0 936.48512 O14964;I3L1P5 O14964 171 178 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate yes no 2 0.049701 34.808 By matching By MS/MS 1 1 1.2895 1.2014 3.6643 2 Median 1.2507 1.2329 NaN 1 0 Median 1.3295 1.1707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3645800 1457000 2188800 2228600 821730 1406900 1417200 635250 781910 0 0 0 0 0 0 0 0 0 0 0 0 37286 1506 39189 197548;197549 200883 200883 1 VQFLEQQNK QIKLLNNKFASFIDKVQFLEQQNKVLETKW ASFIDKVQFLEQQNKVLETKWNLLQQQTTT K V Q N K V 0 0 1 0 0 3 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1132.5877 CON__P19013;P19013 CON__P19013 229 237 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.00047579 98.299 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3670000 3670000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3670000 3670000 0 + 37287 761 39190 197550 200884 200884 1 VQFWDSATGTLVK FLSDGTIISVDSAGKVQFWDSATGTLVKSH GKVQFWDSATGTLVKSHLIANADVQSIAVA K V Q V K S 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 1 2 1 0 2 0 0 13 0 1450.7456 H3BSH7;Q969X6;A0A0J9YWM9;J3KSI1;A0A0J9YXV4;A0A0J9YWK2;A0A0J9YX18 H3BSH7 232 244 CIRH1A Cirhin yes no 2 0.0042261 41.399 By MS/MS 1 0.9859 1.0475 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9859 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4273900 2237000 2037000 0 0 0 0 0 0 4273900 2237000 2037000 0 0 0 0 0 0 0 0 0 37288 1234 39191 197551 200885 200885 1 VQGGALEDSQLVAGVAFK MLDDLLQLKMIGIKKVQGGALEDSQLVAGV GALEDSQLVAGVAFKKTFSYAGFEMQPKKY K V Q F K K 3 0 0 1 0 2 1 3 0 0 2 1 0 1 0 1 0 0 0 3 0 0 18 0 1787.9418 Q99832 Q99832 200 217 CCT7 T-complex protein 1 subunit eta yes yes 2;3 4.1142E-11 103.75 By MS/MS By matching By MS/MS By matching 1 1 2 3 1.1659 1.1169 50.242 7 Median 1.1988 1.1169 NaN 1 0 Median 1.1325 0.96446 NaN 1 0 Median 1.2587 1.2519 8.129 2 0 Median 1.1659 1.0164 73.845 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52661000 23213000 29448000 28244000 12412000 15832000 4434400 1997800 2436700 18810000 8228300 10582000 1172400 574690 597660 0 0 0 0 0 0 37289 3771 39192 197552;197553;197554;197555;197556;197557;197558 200886;200887;200888;200889;200890;200891 200889 6 VQGGALEDSQLVAGVAFKK MLDDLLQLKMIGIKKVQGGALEDSQLVAGV ALEDSQLVAGVAFKKTFSYAGFEMQPKKYH K V Q K K T 3 0 0 1 0 2 1 3 0 0 2 2 0 1 0 1 0 0 0 3 0 0 19 1 1916.0367 Q99832 Q99832 200 218 CCT7 T-complex protein 1 subunit eta yes yes 3 1.5989E-08 79.545 By MS/MS 1 1.1916 1.1036 NaN 1 Median 1.1916 1.1036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68206000 29202000 39004000 68206000 29202000 39004000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37290 3771 39193 197559 200892;200893 200893 2 VQGLEQAVDNFEGKK PKHPGVLKVEAILEKVQGLEQAVDNFEGKK VQGLEQAVDNFEGKKTDKKYLMIEEYLTKE K V Q K K T 1 0 1 1 0 2 2 2 0 0 1 2 0 1 0 0 0 0 0 2 0 0 15 1 1660.842 O95817 O95817 432 446 BAG3 BAG family molecular chaperone regulator 3 yes yes 3 0.02323 18.138 By MS/MS 1 1.3736 1.4189 NaN 1 Median 1.3736 1.4189 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2881400 1163000 1718400 2881400 1163000 1718400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37291 1796 39194 197560 200894 200894 1 VQGLLEEEAAAR LGGSGGAGGRLTRGRVQGLLEEEAAARGRL RGRVQGLLEEEAAARGRLERTRLGALALPR R V Q A R G 3 1 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1284.6674 Q6SPF0;E9PIW9 Q6SPF0 273 284 SAMD1 Atherin yes no 2 9.5692E-05 91.855 By MS/MS By MS/MS 1 2 1.0635 0.97951 16.942 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85694 0.86892 NaN 1 0 Median 1.3198 1.1042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20602000 11388000 9214000 0 0 0 0 0 0 17312000 10003000 7309300 3289800 1385100 1904700 0 0 0 0 0 0 37292 3182 39195 197561;197562;197563 200895;200896;200897;200898;200899 200895 5 VQGLLVPMK IQNKPGDDPNKIVDKVQGLLVPMKFPIHHL NKIVDKVQGLLVPMKFPIHHLALSCDNLTL K V Q M K F 0 0 0 0 0 1 0 1 0 0 2 1 1 0 1 0 0 0 0 2 0 0 9 0 983.58377 A0A494C1F2;P35658;A0A494BZU9 A0A494C1F2 84 92 NUP214 Nuclear pore complex protein Nup214 yes no 2 0.0064228 54.611 By MS/MS 1 0.72004 0.80234 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72004 0.80234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4164200 2324200 1839900 0 0 0 0 0 0 4164200 2324200 1839900 0 0 0 0 0 0 0 0 0 37293 467 39196 197564 200900;200901 200900 2 VQGSDSDEEVVVATTR KEKVEFGVLVSFAYKVQGSDSDEEVVVATT QGSDSDEEVVVATTRIETMLGDVAVAVHPK K V Q T R I 1 1 0 2 0 1 2 1 0 0 0 0 0 0 0 2 2 0 0 4 0 0 16 0 1690.801 P26640;A0A140T936 P26640 522 537 VARS Valine--tRNA ligase yes no 2 1.6041E-25 160.69 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.2019 1.0535 18.277 7 Median 0.91435 0.88197 NaN 1 0 Median 1.2772 1.0899 8.4944 2 2 Median 1.2665 1.3926 13.422 2 2 Median 1.1892 1.0151 5.2629 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57458000 26553000 30905000 8421100 4372200 4048800 6309700 2663200 3646600 22643000 10640000 12003000 20084000 8877500 11207000 0 0 0 0 0 0 37294 2148 39197 197565;197566;197567;197568;197569;197570;197571 200902;200903;200904;200905;200906;200907;200908;200909;200910;200911 200906 10 VQGVFFR EGNTLISVDYEIFGKVQGVFFRKHTQAEGK VDYEIFGKVQGVFFRKHTQAEGKKLGLVGW K V Q F R K 0 1 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 851.46537 G3V2U7;P07311;G3V3F8;G3V597 G3V2U7 48 54 ACYP1 Acylphosphatase;Acylphosphatase-1 yes no 2 0.0018517 111.69 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.205 1.0573 13.305 4 Median 1.0391 1.0087 NaN 1 0 Median 1.3974 1.1889 NaN 1 0 Median 0.86346 0.87398 NaN 1 1 Median 1.4048 1.1082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35079000 16229000 18850000 17209000 8508500 8700400 13862000 5543500 8318300 2915600 1657600 1257900 1092300 518960 573360 0 0 0 0 0 0 37295 1110 39198 197572;197573;197574;197575 200912;200913;200914;200915;200916 200912 5 VQGVFFRK EGNTLISVDYEIFGKVQGVFFRKHTQAEGK DYEIFGKVQGVFFRKHTQAEGKKLGLVGWV K V Q R K H 0 1 0 0 0 1 0 1 0 0 0 1 0 2 0 0 0 0 0 2 0 0 8 1 979.56034 G3V2U7;P07311;G3V3F8;G3V597 G3V2U7 48 55 ACYP1 Acylphosphatase;Acylphosphatase-1 yes no 2 0.0075055 79.597 By MS/MS 1 0.59907 0.58744 NaN 1 Median 0.59907 0.58744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7430800 4735000 2695800 7430800 4735000 2695800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37296 1110 39199 197576 200917 200917 1 VQHITDATLAIVK TSSLSHTLFAESGNKVQHITDATLAIVKGE NKVQHITDATLAIVKGETVPLDVLQIKGEK K V Q V K G 2 0 0 1 0 1 0 0 1 2 1 1 0 0 0 0 2 0 0 2 0 0 13 0 1407.8086 E9PC15;A0A3B3ITD0;Q53H12;E9PG39;A0A3B3ISY9;A0A3B3ISZ0;A0A3B3ITX7;A0A3B3IUC9;A0A3B3ITV0 E9PC15 144 156 AGK Acylglycerol kinase, mitochondrial yes no 3 0.0046115 46.481 By MS/MS 1 1.0144 0.95192 NaN 1 Median 1.0144 0.95192 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6665200 3360500 3304800 6665200 3360500 3304800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37297 435 39200 197577 200918 200918 1 VQHQDALQISDVVMASLLR LQSLLCATLQNVLRKVQHQDALQISDVVMA DALQISDVVMASLLRMFQSTAGSGGVQEDA K V Q L R M 2 1 0 2 0 3 0 0 1 1 3 0 1 0 0 2 0 0 0 3 0 0 19 0 2122.1205 Q14974;J3KTM9 Q14974 595 613 KPNB1 Importin subunit beta-1 yes no 2;3 4.2028E-16 108.17 By matching By MS/MS By MS/MS By MS/MS 1 3 1 2 1.2132 1.1311 60.502 7 Median 1.1221 1.1311 NaN 1 0 Median 1.2764 1.1042 79.175 3 1 Plateau 1.1202 1.1988 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4797 1.567 26.992 2 0 Median NaN NaN NaN 0 0 Median 44358000 17849000 26509000 1091100 502040 589070 40207000 15946000 24261000 1232700 578740 653920 0 0 0 1826900 821750 1005200 0 0 0 37298 2904 39201 197578;197579;197580;197581;197582;197583;197584 200919;200920;200921;200922;200923;200924;200925 200924 7 VQHQTSSTSPLSSPNQTSSEPRPLPAPR ATMKTSTVSTAHASKVQHQTSSTSPLSSPN PNQTSSEPRPLPAPRRPKVNSILNLFGSWL K V Q P R R 1 2 1 0 0 3 1 0 1 0 2 0 0 0 6 7 3 0 0 1 0 0 28 1 2985.4904 Q86X10;A2A2F0 Q86X10 409 436 RALGAPB Ral GTPase-activating protein subunit beta yes no 4 0.00063433 34.125 By MS/MS 1 0.54838 0.58645 NaN 1 Median 0.54838 0.58645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2869600 1957700 911930 2869600 1957700 911930 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37299 3298 39202 197585 200926 200926 1 VQHRPSGLIMAR RISELGAGNGGVVTKVQHRPSGLIMARKLI VTKVQHRPSGLIMARKLIHLEIKPAIRNQI K V Q A R K 1 2 0 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 0 1 0 0 12 1 1363.7507 P36507;A0A1B0GUL7 P36507 89 100 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 yes no 3 0.00020172 64.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 3 0.95208 0.90632 52.944 14 Median 0.87925 0.90632 7.6978 2 0 Median 0.98581 0.90469 9.6615 2 0 Median 1.1758 1.2386 13.882 2 1 Median 0.81046 0.73439 1.7312 2 0 Median 2.2408 2.4024 17.916 3 0 Median 0.75379 0.66297 22.25 3 0 Median 26456000 12176000 14280000 4745000 2396000 2349100 5636500 2723200 2913400 3343800 1550700 1793100 1982600 1155400 827270 7195400 1980200 5215200 3552900 2371000 1182000 37300 2256 39203 197586;197587;197588;197589;197590;197591;197592;197593;197594;197595;197596;197597;197598;197599 200927;200928;200929;200930;200931;200932;200933;200934;200935;200936;200937;200938;200939;200940;200941;200942 200938 16 VQHVIHYQVPR LLATDVAARGLDIPKVQHVIHYQVPRTSEI DIPKVQHVIHYQVPRTSEIYVHRSGRTARA K V Q P R T 0 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 1 3 0 0 11 0 1374.7521 G3V529;Q9GZR7;A0A087WXU8;F5GYL3;A0A1W2PRR2 G3V529 613 623 DDX24 ATP-dependent RNA helicase DDX24 yes no 3 0.00019839 63.694 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 1.2646 1.2537 28.321 7 Median NaN NaN NaN 0 0 Median 1.5561 1.3222 NaN 1 0 Median 0.95746 1.025 NaN 1 0 Median 1.0097 0.86015 NaN 1 0 Median 1.6198 1.5801 22.575 3 0 Median 1.2646 1.0296 NaN 1 0 Median 18269000 8629100 9639700 0 0 0 3710600 1521100 2189500 4080000 2113400 1966600 1626600 779610 846960 7292600 3508400 3784100 1559000 706470 852560 37301 1118 39204 197600;197601;197602;197603;197604;197605;197606 200943;200944;200945;200946;200947;200948;200949 200948 7 VQHVVQESPPAFLSGLAQR GFLRRLLEYVKWRLRVQHVVQESPPAFLSG VQESPPAFLSGLAQRVCIQRKPLRFCAERL R V Q Q R V 2 1 0 0 0 3 1 1 1 0 2 0 0 1 2 2 0 0 0 3 0 0 19 0 2062.096 P18074;E7EVE9;A8MX75;K7EKF3 P18074 346 364 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 3.0613E-08 68.567 By MS/MS 1 0.74352 0.7563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74352 0.7563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12611000 7342000 5269000 0 0 0 0 0 0 12611000 7342000 5269000 0 0 0 0 0 0 0 0 0 37302 2053 39205 197607 200950 200950 1 VQIAANEETQER TKVAQGATEKSPEDKVQIAANEETQEREEQ EDKVQIAANEETQEREEQMKEGEETEGSEE K V Q E R E 2 1 1 0 0 2 3 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1386.6739 P49321 P49321 456 467 NASP Nuclear autoantigenic sperm protein yes yes 2 1.9352E-30 211.78 By MS/MS By MS/MS 1 3 0.76996 0.69976 87.682 4 Median 0.40376 0.40309 NaN 1 0 Median 1.4683 1.2148 100.46 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37284000 15909000 21375000 1516100 1050800 465320 35768000 14859000 20910000 0 0 0 0 0 0 0 0 0 0 0 0 37303 2376 39206 197608;197609;197610;197611 200951;200952;200953;200954 200953 4 VQIAANEETQEREEQMK TKVAQGATEKSPEDKVQIAANEETQEREEQ IAANEETQEREEQMKEGEETEGSEEDDKEN K V Q M K E 2 1 1 0 0 3 5 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 17 1 2031.9531 P49321 P49321 456 472 NASP Nuclear autoantigenic sperm protein yes yes 3 7.1864E-12 109.35 By MS/MS 2 1.427 1.3195 23.012 2 Median NaN NaN NaN 0 0 Median 1.427 1.3195 23.012 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10759000 4128900 6630000 0 0 0 10759000 4128900 6630000 0 0 0 0 0 0 0 0 0 0 0 0 37304 2376 39207 197612;197613 200955;200956 200956 2 VQIAEAINLQDK DHTDPEDNEIVCFLKVQIAEAINLQDKNLM FLKVQIAEAINLQDKNLMAQLQETMRCVCR K V Q D K N 2 0 1 1 0 2 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 12 0 1340.73 Q14C86;F8W9S7 Q14C86 1164 1175 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 2 0.0012241 55.567 By MS/MS 1 1.1141 0.98764 NaN 1 Median NaN NaN NaN 0 0 Median 1.1141 0.98764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2490000 1179500 1310500 0 0 0 2490000 1179500 1310500 0 0 0 0 0 0 0 0 0 0 0 0 37305 2907 39208 197614 200957 200957 1 VQIAVANAQELLQR GSGKLDPGLIMEQVKVQIAVANAQELLQRM KVQIAVANAQELLQRMTDKCFRKCIGKPGG K V Q Q R M 3 1 1 0 0 3 1 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 14 0 1551.8733 Q9Y5L4 Q9Y5L4 28 41 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 2 9.7392E-06 149.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.0016 1.0174 13.866 6 Median 0.95999 0.93061 NaN 1 0 Median 1.6152 1.3064 NaN 1 0 Median 0.98264 0.98766 0.78206 2 0 Median 1.5754 1.2466 NaN 1 0 Median 1.0208 1.0422 NaN 1 0 Median NaN NaN NaN 0 0 Median 64905000 32195000 32710000 26775000 13563000 13212000 1139200 442200 697020 33350000 16363000 16988000 612430 228930 383500 3028000 1598100 1429900 0 0 0 37306 4462 39209 197615;197616;197617;197618;197619;197620 200958;200959;200960;200961;200962;200963;200964;200965;200966;200967;200968;200969;200970 200959 13 VQIDTFK FTMRKHGGEKGVPFRVQIDTFKENENGEYT GEKGVPFRVQIDTFKENENGEYTEHLHSAS R V Q F K E 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 849.45962 Q12800;F8VX55;F8VWL0;Q9NZI6 Q12800 211 217 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 2 0.031276 49.358 By MS/MS By MS/MS 1 1 1.2899 1.2117 15.9 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0564 1.0829 NaN 1 0 Median 1.575 1.3559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4456300 2024000 2432300 0 0 0 0 0 0 3066600 1459500 1607100 1389600 564460 825180 0 0 0 0 0 0 37307 2760 39210 197621;197622 200971;200972 200971 2 VQIDVYEK GSAVAHFLQQHFGPRVQIDVYEKGTVGGRL QQHFGPRVQIDVYEKGTVGGRLATISVNKQ R V Q E K G 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 0 992.51786 Q8NBM8;D6R9J0 Q8NBM8 53 60 PCYOX1L Prenylcysteine oxidase-like yes no 2 0.053945 50.607 By MS/MS 1 1.1469 1.1049 NaN 1 Median 1.1469 1.1049 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2681400 1269200 1412200 2681400 1269200 1412200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37308 3407 39211 197623 200973 200973 1 VQIEHISSLIK LLEQNLIRVIEPFSRVQIEHISSLIKLSKA PFSRVQIEHISSLIKLSKADVERKLSQMIL R V Q I K L 0 0 0 0 0 1 1 0 1 3 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1265.7343 O00231 O00231 345 355 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2;3 0.00096639 84.213 By MS/MS By matching By MS/MS By MS/MS 4 4 3 2 1.3408 1.1588 35.047 13 Median 1.505 1.3944 51.946 4 2 Median 1.1574 0.99634 13.164 4 0 Median 1.5477 1.5136 12.322 3 1 Median 1.2366 1.1065 11.444 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89474000 33033000 56441000 55295000 19374000 35921000 11665000 4962900 6701700 14480000 5448900 9031000 8035000 3247900 4787100 0 0 0 0 0 0 37309 1448 39212 197624;197625;197626;197627;197628;197629;197630;197631;197632;197633;197634;197635;197636 200974;200975;200976;200977;200978;200979;200980;200981;200982 200974 9 VQIFEYNENTR IAVGSDDSSPNAMAKVQIFEYNENTRKYAK AMAKVQIFEYNENTRKYAKAETLMTVTDPV K V Q T R K 0 1 2 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 11 0 1411.6732 Q96EE3;K7ELV2;K7ENI5 Q96EE3 197 207 SEH1L Nucleoporin SEH1 yes no 2 2.1186E-07 168.8 By MS/MS By MS/MS 2 2 1.1239 1.0152 15.54 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92143 0.88502 13.377 2 0 Median 1.3195 1.1081 6.3529 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49953000 22616000 27337000 0 0 0 0 0 0 38080000 17614000 20466000 11873000 5001600 6871200 0 0 0 0 0 0 37310 3634 39213 197637;197638;197639;197640 200983;200984;200985;200986;200987 200983 5 VQIFTADLSEIPR PPPYKHIKVNRPIGRVQIFTADLSEIPRCN GRVQIFTADLSEIPRCNCKATDENPCGIDS R V Q P R C 1 1 0 1 0 1 1 0 0 2 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1487.7984 Q96L73 Q96L73 1882 1894 NSD1 Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific yes yes 2 0.00091964 62.303 By MS/MS 1 0.74197 0.82585 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74197 0.82585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 970280 575320 394960 0 0 0 0 0 0 970280 575320 394960 0 0 0 0 0 0 0 0 0 37311 3699 39214 197641 200988 200988 1 VQIPIMLVGNK VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH MVGKVQIPIMLVGNKKDLHMERVISYEEGK K V Q N K K 0 0 1 0 0 1 0 1 0 2 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1210.7108 Q15382;C9J931;C9J469 Q15382 110 120 RHEB GTP-binding protein Rheb yes no 2 0.0029089 50.878 By MS/MS By matching 1 2 0.98857 0.86503 24.336 3 Median 1.07 1.0113 NaN 1 0 Median 0.83905 0.73673 22.705 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7495500 3613000 3882500 6113800 2848600 3265200 1381700 764380 617300 0 0 0 0 0 0 0 0 0 0 0 0 37312 2943 39215 197642;197643;197644 200989 200989 1 VQIPIMLVGNKK VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH VGKVQIPIMLVGNKKDLHMERVISYEEGKA K V Q K K D 0 0 1 0 0 1 0 1 0 2 1 2 1 0 1 0 0 0 0 2 0 0 12 1 1338.8057 Q15382;C9J931;C9J469 Q15382 110 121 RHEB GTP-binding protein Rheb yes no 2;3 6.3582E-05 95.502 By MS/MS By matching 4 3 1.0758 1.0657 16.583 7 Median 1.0502 1.0933 20.898 4 0 Median 1.1237 1.0657 10.719 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25973000 12395000 13578000 24897000 11841000 13056000 1075800 553860 521900 0 0 0 0 0 0 0 0 0 0 0 0 37313 2943 39216 197645;197646;197647;197648;197649;197650;197651 200990;200991;200992;200993 200992 4 VQIQESVR MGKVQVYQEPNRETRVQIQESVRGKDVFII EPNRETRVQIQESVRGKDVFIIQTVSKDVN R V Q V R G 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 8 0 957.52434 O60256;E7EPA1;C9JJS3;C9K0K7;C9JDU5;C9JDH0;E7EW35;I3L331;I3L164 O60256 61 68 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 0.0014789 144.83 By MS/MS By MS/MS 1 1 1.0439 0.97442 10.309 2 Median 0.90398 0.90592 NaN 1 0 Median 1.2055 1.0481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7791900 3454500 4337400 2585200 1142900 1442300 5206700 2311600 2895100 0 0 0 0 0 0 0 0 0 0 0 0 37314 1607 39217 197652;197653 200994;200995;200996;200997 200997 4 VQISPDSGGLPER GGEQINKIQQDSGCKVQISPDSGGLPERSV CKVQISPDSGGLPERSVSLTGAPESVQKAK K V Q E R S 0 1 0 1 0 1 1 2 0 1 1 0 0 0 2 2 0 0 0 1 0 0 13 0 1353.6888 Q92945;A0A087WTP3;M0QYH3;M0QXW7 Q92945 178 190 KHSRP Far upstream element-binding protein 2 yes no 2 4.7281E-16 192.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 6 3 3 0.78301 0.71639 14.924 18 Median 0.74976 0.70889 NaN 1 0 Median 0.88404 0.76435 NaN 1 0 Median 0.68761 0.7024 21.371 4 1 Median 0.92999 0.79015 11.546 6 1 Median 0.74377 0.74574 5.948 3 2 Median 0.85485 0.68698 7.2378 3 3 Median 955260000 539150000 416110000 35231000 19489000 15741000 16425000 8708000 7716700 572160000 331640000 240520000 217560000 114520000 103040000 68175000 37543000 30632000 45708000 27250000 18459000 37315 3568 39218 197654;197655;197656;197657;197658;197659;197660;197661;197662;197663;197664;197665;197666;197667;197668;197669;197670;197671;197672 200998;200999;201000;201001;201002;201003;201004;201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017;201018;201019;201020;201021;201022;201023;201024;201025;201026;201027;201028 201018 31 VQISQLHQEIQR QVSAQLHGDRMQETKVQISQLHQEIQRLQS ETKVQISQLHQEIQRLQSQTENLKKQNASL K V Q Q R L 0 1 0 0 0 4 1 0 1 2 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1477.8001 CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4 CON__Q7RTT2 328 339 KRT78 Keratin, type II cytoskeletal 78 yes no 3 0.00097265 63.727 By MS/MS By MS/MS 1 3 0.11773 0.096802 83.048 4 Median NaN NaN NaN 0 0 Median 0.10831 0.087601 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.12798 0.10697 96.226 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3814100 3159800 654290 0 0 0 451520 422120 29401 0 0 0 3362600 2737700 624890 0 0 0 0 0 0 + 37316 788 39219 197673;197674;197675;197676 201029;201030;201031;201032 201030 4 VQIVISSAR ______________________________ ______________________________ M V Q A R A 1 1 0 0 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 9 0 971.57638 P0CG13;E5RGY5;E5RHL4;H3BQB7 P0CG13 2 10 CHTF8 Chromosome transmission fidelity protein 8 homolog yes no 2 0.0013564 82.426 By matching By MS/MS By matching 2 1 1 0.99059 0.98586 4.3358 4 Median 0.98205 0.97691 2.3585 2 0 Median 1.2504 1.0613 NaN 1 0 Median 0.9659 0.97844 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12709000 6052400 6657100 4262000 2097700 2164200 6354700 2882700 3472000 2092900 1072000 1020900 0 0 0 0 0 0 0 0 0 37317 1927 39220 197677;197678;197679;197680 201033;201034 201033 2 VQIYHNPTANSFR KRWLPAGTGPQAFSRVQIYHNPTANSFRVV SRVQIYHNPTANSFRVVGRKMQPDQQVVIN R V Q F R V 1 1 2 0 0 1 0 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 13 0 1545.7688 P50552;K7ENR7;K7ENL7 P50552 36 48 VASP Vasodilator-stimulated phosphoprotein yes no 3 0.00012534 72.891 By MS/MS By MS/MS By MS/MS 1 1 1 1.1239 0.98378 4.0324 3 Plateau 1.0226 0.98378 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.058 1.044 NaN 1 0 Median 1.1239 0.96666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43221000 19262000 23959000 8989800 4506700 4483100 0 0 0 11205000 4446200 6758400 23027000 10309000 12718000 0 0 0 0 0 0 37318 2416 39221 197681;197682;197683 201035;201036;201037;201038 201038 3 VQLDLAETDLSQGVAR SNSSFMSRERELLGKVQLDLAETDLSQGVA QLDLAETDLSQGVARWYDLMDNKDKGSS__ K V Q A R W 2 1 0 2 0 2 1 1 0 0 3 0 0 0 0 1 1 0 0 2 0 0 16 0 1713.8897 Q9BSJ8 Q9BSJ8 1076 1091 ESYT1 Extended synaptotagmin-1 yes yes 2 8.7955E-10 123.84 By MS/MS 2 0.93802 0.91671 16.097 2 Median 0.93802 0.91671 16.097 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21375000 10674000 10701000 21375000 10674000 10701000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37319 3816 39222 197684;197685 201039;201040 201039 2 VQLDTIQGELNAPTQFK RKSGYAIQADEEQLRVQLDTIQGELNAPTQ LDTIQGELNAPTQFKGRLNELMSQIRMQNH R V Q F K G 1 0 1 1 0 3 1 1 0 1 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1900.9894 Q7Z3B4 Q7Z3B4 412 428 NUP54 Nucleoporin p54 yes yes 2;3 5.2469E-25 141.58 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 3 1 1 2 1.0563 0.90149 15.988 9 Median 0.92902 0.89668 NaN 1 0 Median 1.5048 1.3309 NaN 1 0 Median 0.86422 0.839 19.133 3 1 Median 1.1332 0.97357 NaN 1 0 Median 0.84397 0.86692 NaN 1 0 Median 1.1253 0.94854 7.1962 2 0 Median 65190000 33836000 31354000 2237600 1093000 1144600 160600 69187 91412 58736000 30668000 28068000 2169400 987800 1181600 1067200 639030 428200 818710 379080 439630 37320 3239 39223 197686;197687;197688;197689;197690;197691;197692;197693;197694 201041;201042;201043 201043 3 VQLFEDPTVDKEVEIR NCPECGTPLRKSNFRVQLFEDPTVDKEVEI QLFEDPTVDKEVEIRKKVLKIYNKREEDFP R V Q I R K 0 1 0 2 0 1 3 0 0 1 1 1 0 1 1 0 1 0 0 3 0 0 16 1 1915.9891 P51948 P51948 60 75 MNAT1 CDK-activating kinase assembly factor MAT1 yes yes 3 4.1906E-05 58.671 By MS/MS By matching 1 1 1.0132 1.0255 4.6066 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91438 0.99262 NaN 1 0 Median 1.1226 1.0594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10205000 5466800 4738300 0 0 0 0 0 0 10125000 5427100 4697800 80163 39743 40420 0 0 0 0 0 0 37321 2445 39224 197695;197696 201044;201045 201045 2 VQLGGSDQLGNIMSGYEFINK QAYDFYYLFQRYGCRVQLGGSDQLGNIMSG DQLGNIMSGYEFINKLTGEDVFGITVPLIT R V Q N K L 0 0 2 1 0 2 1 4 0 2 2 1 1 1 0 2 0 0 1 1 0 0 21 0 2269.1049 Q9Y2Z4;H0YHS6 Q9Y2Z4 240 260 YARS2 Tyrosine--tRNA ligase, mitochondrial;Tyrosine--tRNA ligase yes no 2 0.0041232 42.209 By MS/MS 1 1.0545 1.0419 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0545 1.0419 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4003300 2348500 1654900 0 0 0 0 0 0 4003300 2348500 1654900 0 0 0 0 0 0 0 0 0 37322 4399 39225 197697 201046 201046 1 VQLISGPPAK KDLCFTWREFSDFIRVQLISGPPAKLLLID SDFIRVQLISGPPAKLLLIDWPELKESIPV R V Q A K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A6NHR9;J3KTL8 A6NHR9 1247 1256 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.00047649 90.657 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 2 0.8908 0.7886 7.595 8 Median NaN NaN NaN 0 0 Median 0.90052 0.79089 4.2224 2 2 Median 0.6427 0.69934 6.5703 2 0 Median 0.90829 0.82076 NaN 1 0 Median 0.72627 0.769 NaN 1 0 Median 0.97722 0.82599 2.9933 2 0 Median 30862000 17499000 13363000 0 0 0 2988900 1382500 1606500 19351000 11679000 7671800 2995300 1558900 1436400 2129300 1146600 982690 3397500 1732100 1665400 37323 518 39226 197698;197699;197700;197701;197702;197703;197704;197705 201047;201048;201049;201050;201051;201052;201053 201047 7 VQLNVFDEQGEEDSYDLK QVLQDLREIENEDMRVQLNVFDEQGEEDSY NVFDEQGEEDSYDLKGRLDDIRMEMDDFNE R V Q L K G 0 0 1 3 0 2 3 1 0 0 2 1 0 1 0 1 0 0 1 2 0 0 18 0 2126.9644 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 360 377 DIAPH1 Protein diaphanous homolog 1 yes no 2 1.9553E-08 96.745 By MS/MS By matching 1 1 1.2144 1.1366 5.8355 2 Median 1.2314 1.1845 NaN 1 0 Median 1.1977 1.0907 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6325600 2893900 3431700 6135000 2806700 3328300 190630 87280 103350 0 0 0 0 0 0 0 0 0 0 0 0 37324 274 39227 197706;197707 201054;201055 201054 2 VQLNVFDEQGEEDSYDLKGR QVLQDLREIENEDMRVQLNVFDEQGEEDSY FDEQGEEDSYDLKGRLDDIRMEMDDFNEVF R V Q G R L 0 1 1 3 0 2 3 2 0 0 2 1 0 1 0 1 0 0 1 2 0 0 20 1 2340.087 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 360 379 DIAPH1 Protein diaphanous homolog 1 yes no 3 3.9225E-11 75.122 By MS/MS 1 1.0345 1.0412 NaN 1 Median 1.0345 1.0412 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8292600 3572400 4720200 8292600 3572400 4720200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37325 274 39228 197708 201056 201056 1 VQLPAYLK ______________________________ SVARIVKVQLPAYLKRLPVPESITGFARLT K V Q L K R 1 0 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 930.55385 Q8N5K1;A0A2R8Y540;I3L1N9 Q8N5K1 12 19 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 0.0044851 81.297 By MS/MS By MS/MS By MS/MS By matching 3 3 1 1 0.96933 0.89448 26.031 8 Median 0.94494 0.85488 10.053 3 0 Median 0.94892 0.83515 15.647 3 0 Median 1.0911 1.0792 NaN 1 0 Median 2.0575 1.6899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95018000 43338000 51680000 35019000 17149000 17870000 56961000 24821000 32140000 2436900 1144000 1292900 600870 223490 377380 0 0 0 0 0 0 37326 3379 39229 197709;197710;197711;197712;197713;197714;197715;197716 201057;201058;201059;201060;201061;201062;201063 201059 7 VQLPAYLKR ______________________________ VARIVKVQLPAYLKRLPVPESITGFARLTV K V Q K R L 1 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 9 1 1086.655 Q8N5K1;A0A2R8Y540;I3L1N9 Q8N5K1 12 20 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 0.018661 81.119 By MS/MS By MS/MS 1 1 1.0776 1.0027 13.403 2 Median 0.93005 0.912 NaN 1 0 Median 1.2485 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36491000 16350000 20141000 5526400 2869500 2656900 30965000 13480000 17485000 0 0 0 0 0 0 0 0 0 0 0 0 37327 3379 39230 197717;197718 201064;201065 201064 1 VQLPPEIQLAQR ______________________________ VSRVQLPPEIQLAQRLAGNEQVTRDRAVRK R V Q Q R L 1 1 0 0 0 3 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 12 0 1390.7932 P56182;D6RE82 P56182 5 16 RRP1 Ribosomal RNA processing protein 1 homolog A yes no 2;3 3.6707E-06 111.65 By matching By MS/MS By matching By MS/MS By matching 1 3 1 5 3 0.89803 0.82776 34.431 13 Median NaN NaN NaN 0 0 Median 1.1466 1.0227 NaN 1 0 Median 0.8897 0.90902 19.96 3 0 Plateau 1.0524 0.9198 NaN 1 0 Median 0.77545 0.82776 52.956 5 0 Median 1.0132 0.87156 4.9434 3 0 Plateau 40416000 23366000 17050000 0 0 0 199850 71096 128760 8796600 4967500 3829100 344910 182870 162040 28486000 16853000 11633000 2588600 1291700 1296900 37328 2507 39231 197719;197720;197721;197722;197723;197724;197725;197726;197727;197728;197729;197730;197731 201066;201067;201068;201069;201070 201068 4 VQLQEAER EVQKKNAEQAATQLKVQLQEAERRWEEVQS QAATQLKVQLQEAERRWEEVQSYIRKRTAE K V Q E R R 1 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 971.50361 Q86UP2 Q86UP2 488 495 KTN1 Kinectin yes yes 2 5.714E-05 113.89 By MS/MS 1 1.3682 1.1473 NaN 1 Median NaN NaN NaN 0 0 Median 1.3682 1.1473 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8032300 3446000 4586400 0 0 0 8032300 3446000 4586400 0 0 0 0 0 0 0 0 0 0 0 0 37329 3280 39232 197732 201071 201071 1 VQLSGPQEAEK TKTFLTLSLQDMASRVQLSGPQEAEKYVLH MASRVQLSGPQEAEKYVLHMIEDGEIFASI R V Q E K Y 1 0 0 0 0 2 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1184.6037 Q9UNS2;H7C3P9 Q9UNS2 326 336 COPS3 COP9 signalosome complex subunit 3 yes no 2 0.03568 29.473 By MS/MS By matching 1 1 0.93276 0.84646 0.95721 2 Median 0.8867 0.85221 NaN 1 0 Median 0.98122 0.84075 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6151600 3118100 3033400 1652300 910390 741890 4499300 2207700 2291500 0 0 0 0 0 0 0 0 0 0 0 0 37330 4350 39233 197733;197734 201072 201072 1 VQLTTCIHHIIK ENIVEAIIHSPELIRVQLTTCIHHIIKHDY LIRVQLTTCIHHIIKHDYPSRWTAIVDKIG R V Q I K H 0 0 0 0 1 1 0 0 2 3 1 1 0 0 0 0 2 0 0 1 0 0 12 0 1461.8126 O95373;E9PLB2 O95373 108 119 IPO7 Importin-7 yes no 3 0.00041145 51.998 By MS/MS 1 1.4697 1.2435 NaN 1 Median NaN NaN NaN 0 0 Median 1.4697 1.2435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11462000 4703700 6758100 0 0 0 11462000 4703700 6758100 0 0 0 0 0 0 0 0 0 0 0 0 37331 1768 39234 197735 201073 201073 1 VQLVSVMK ECTRCEQSLLKEPQKVQLVSVMKEAIGAVI LLKEPQKVQLVSVMKEAIGAVIHYLLQVGS K V Q M K E 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 0 3 0 0 8 0 902.52592 Q9UBB6 Q9UBB6 362 369 NCDN Neurochondrin yes yes 2 0.028622 40.268 By MS/MS 1 1.5134 1.3048 NaN 1 Median NaN NaN NaN 0 0 Median 1.5134 1.3048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2615300 1085400 1529900 0 0 0 2615300 1085400 1529900 0 0 0 0 0 0 0 0 0 0 0 0 37332 4234 39235 197736 201074 201074 1 VQLVVGDGR NNVRKDDPTLLSSGRVQLVVGDGRMGYAEE LLSSGRVQLVVGDGRMGYAEEAPYDAIHVG R V Q G R M 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 941.52943 A0A0A0MRJ6;H7BY58;P22061;F6S8N6;A0A3F2YNX8 A0A0A0MRJ6 194 202 PCMT1 Protein-L-isoaspartate O-methyltransferase;Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes no 2 0.00046423 124.08 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1958 1.0785 10.668 5 Median 1.0607 1.0092 NaN 1 0 Median 1.2749 1.0785 NaN 1 0 Median 0.97804 1.0044 18.919 2 0 Median 1.3434 1.1169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137150000 62933000 74220000 64739000 30883000 33855000 23226000 10742000 12484000 40676000 18142000 22534000 8511700 3165500 5346200 0 0 0 0 0 0 37333 163 39236 197737;197738;197739;197740;197741 201075;201076;201077;201078;201079;201080;201081 201076 7 VQLYELK NPMILTNILSSPYFKVQLYELKTYHEVVDE ILSSPYFKVQLYELKTYHEVVDEIYFKVTH K V Q L K T 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 7 0 891.50657 Q5VTL8 Q5VTL8 74 80 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.028199 50.966 By matching By MS/MS By matching 1 1 1 1.1799 0.97923 4.8094 3 Median 0.97905 0.90673 NaN 1 0 Median 1.1799 0.9906 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1977 0.97923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8687600 3981900 4705700 2243500 1117500 1126000 6160600 2726600 3434000 0 0 0 283490 137770 145720 0 0 0 0 0 0 37334 3111 39237 197742;197743;197744 201082 201082 1 VQMDMLQVLLR QTGRRDTKVVSMVGRVQMDMLQVLLREYKL MVGRVQMDMLQVLLREYKLRSYTLNAVSFH R V Q L R E 0 1 0 1 0 2 0 0 0 0 3 0 2 0 0 0 0 0 0 2 0 0 11 0 1344.7258 M0R2B7;P28340;A0A087WYJ2;M0QZR8;A0A2R8Y705;A0A2R8Y7K6 M0R2B7 455 465 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.0092274 39.022 By MS/MS By MS/MS By matching 1 2 1 0.89803 0.93022 17.481 4 Median 0.90229 0.9008 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83359 0.87627 12.992 2 0 Median NaN NaN NaN 0 0 Median 1.1628 1.2115 NaN 1 0 Median NaN NaN NaN 0 0 Median 2715800 1487400 1228500 1515300 843070 672230 0 0 0 1012900 560520 452390 0 0 0 187640 83783 103850 0 0 0 37335 1436 39238 197745;197746;197747;197748 201083;201084 201083 2 VQMEELSK ARQRSQVEEELFSVRVQMEELSKLKARIEA EELFSVRVQMEELSKLKARIEAENRALILR R V Q S K L 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 8 0 962.47428 Q15149 Q15149 2372 2379 PLEC Plectin yes yes 2 0.0059615 73.248 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.2105 1.1319 14.689 4 Median 1.1548 1.1464 NaN 1 0 Median 1.2689 1.1175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75927 0.89229 NaN 1 0 Median 1.4738 1.2627 NaN 1 0 Median 17028000 7113600 9914400 3489200 1439700 2049500 8997600 3788300 5209300 0 0 0 0 0 0 1178600 586090 592510 3362500 1299500 2063000 37336 2933 39239 197749;197750;197751;197752 201085;201086;201087;201088 201087 4 VQMLLSDR KGNNPKGYLPSHYERVQMLLSDRFLGFFMV LPSHYERVQMLLSDRFLGFFMVPAQSSWNY R V Q D R F 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 8 0 960.50625 Q6P2Q9;I3L1T8 Q6P2Q9 2259 2266 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.00069855 151.56 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1.9777 1.7181 46.459 6 Median NaN NaN NaN 0 0 Median 1.2396 1.0911 70.253 2 0 Median 0.93055 1.0143 NaN 1 0 Median 1.9777 1.731 7.0919 2 0 Median NaN NaN NaN 0 0 Median 2.2826 2.3419 NaN 1 0 Median 31507000 14274000 17233000 0 0 0 4669500 1635500 3034000 19801000 10100000 9701000 6093600 2226300 3867300 0 0 0 942580 312080 630500 37337 3157 39240 197753;197754;197755;197756;197757;197758 201089;201090;201091;201092;201093 201089 5 VQNATLAVANITNADSATR KDSVTISVDGVVYYRVQNATLAVANITNAD TLAVANITNADSATRLLAQTTLRNVLGTKN R V Q T R L 5 1 3 1 0 1 0 0 0 1 1 0 0 0 0 1 3 0 0 2 0 0 19 0 1928.9916 P27105;F8VSL7 P27105 126 144 STOM Erythrocyte band 7 integral membrane protein yes no 2 3.7984E-18 114.74 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 1.9413 1.6542 48.391 7 Median 1.5208 1.4279 35.194 2 0 Median 0.93341 0.79815 33.334 2 0 Median 2.3274 2.207 NaN 1 0 Median 1.9656 1.6542 NaN 1 0 Median 2.4763 2.4294 NaN 1 0 Median NaN NaN NaN 0 0 Median 19879000 8392700 11486000 12941000 5766400 7174500 2299300 1195300 1104000 2719500 740250 1979300 102460 39622 62837 1816800 651150 1165600 0 0 0 37338 2150 39241 197759;197760;197761;197762;197763;197764;197765 201094;201095;201096;201097 201094 4 VQNIHPVESAK LTALEAVPIDIDKTKVQNIHPVESAKIEPP DKTKVQNIHPVESAKIEPPDTGLYYDEYLK K V Q A K I 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 0 2 0 0 11 0 1220.6513 E9PKG6;P80303;Q2L696;E9PLR0;E9PLE9;A0A2R8Y6G7;E9PJP3;E9PM22 E9PKG6 34 44 NUCB2;Nucb2 Nucleobindin-2;Nesfatin-1 yes no 2;3 0.013692 37.344 By matching By MS/MS 2 2 0.75593 0.7022 18.363 4 Median 0.6859 0.67663 10.458 2 0 Median 0.91678 0.80488 24.514 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2646300 1337200 1309100 829390 451960 377430 1816900 885230 931710 0 0 0 0 0 0 0 0 0 0 0 0 37339 948 39242 197766;197767;197768;197769 201098;201099 201099 2 VQNMALYADVGGK ETVFIVEISLTCKNRVQNMALYADVGGKQF NRVQNMALYADVGGKQFPVTRGQDVGRYQV R V Q G K Q 2 0 1 1 0 1 0 2 0 0 1 1 1 0 0 0 0 0 1 2 0 0 13 0 1364.6758 P51571 P51571 61 73 SSR4 Translocon-associated protein subunit delta yes yes 2 2.6176E-05 93.258 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 4 1.3613 1.1846 33.336 14 Median 1.0583 0.99559 58.176 4 3 Median 1.5166 1.2865 30.282 4 2 Median 1.2814 1.223 6.0962 2 0 Median 1.3637 1.1289 6.7311 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 193220000 81542000 111670000 104910000 47756000 57157000 38888000 12272000 26616000 41430000 18360000 23070000 7983900 3152800 4831100 0 0 0 0 0 0 37340 2435 39243;39244 197770;197771;197772;197773;197774;197775;197776;197777;197778;197779;197780;197781;197782;197783 201100;201101;201102;201103;201104;201105;201106;201107;201108;201109;201110;201111;201112;201113;201114;201115;201116;201117;201118;201119 201103 1137 20 VQNTSLEAIVQNASSDNQGIQLSAVQAAR HEDICEDSDIDGDYRVQNTSLEAIVQNASS SDNQGIQLSAVQAARKLLSSDRNPPIDDLI R V Q A R K 5 1 3 1 0 5 1 1 0 2 2 0 0 0 0 4 1 0 0 3 0 0 29 0 3011.5272 O00629 O00629 68 96 KPNA4 Importin subunit alpha-3 yes yes 3 1.8995E-26 90.974 By MS/MS 1 0.86556 0.85464 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86556 0.85464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38567000 13702000 24865000 0 0 0 0 0 0 38567000 13702000 24865000 0 0 0 0 0 0 0 0 0 37341 1475 39245 197784 201120 201120 1 VQPGDRVNVTGIYR PHTVILFAHNDLVDKVQPGDRVNVTGIYRA KVQPGDRVNVTGIYRAVPIRVNPRVSNVKS K V Q Y R A 0 2 1 1 0 1 0 2 0 1 0 0 0 0 1 0 1 0 1 3 0 0 14 1 1572.8372 A0A3B3IU45;P33991;E5RG31;A0A3B3ITP6 A0A3B3IU45 332 345 MCM4 DNA replication licensing factor MCM4 yes no 3 0.0002528 60.401 By MS/MS By matching 1 1 0.68359 0.71155 23.521 2 Median 0.75634 0.84031 NaN 1 0 Median 0.61785 0.60253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7933200 4319000 3614200 6934000 3860800 3073200 999200 458160 541040 0 0 0 0 0 0 0 0 0 0 0 0 37342 441 39246 197785;197786 201121;201122 201122 2 VQPIPELSELSR IVEMIRQSGDSVRLKVQPIPELSELSRSWL RLKVQPIPELSELSRSWLRSGEGPRREPSD K V Q S R S 0 1 0 0 0 1 2 0 0 1 2 0 0 0 2 2 0 0 0 1 0 0 12 0 1366.7456 Q92614;A0A0D9SFK2 Q92614 307 318 MYO18A Unconventional myosin-XVIIIa yes no 2 0.001303 54.608 By MS/MS By matching 1 1 0.79488 0.78321 25.987 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58684 0.65174 NaN 1 0 Median 1.0767 0.9412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1746600 986610 760030 0 0 0 0 0 0 1508300 875290 633010 238350 111320 127020 0 0 0 0 0 0 37343 267 39247 197787;197788 201123 201123 1 VQPPQQNYSLAELDEK PEYFQSVSFSGKRRKVQPPQQNYSLAELDE QPPQQNYSLAELDEKISALKQALLRKSREA K V Q E K I 1 0 1 1 0 3 2 0 0 0 2 1 0 0 2 1 0 0 1 1 0 0 16 0 1857.9109 Q9NS73 Q9NS73 305 320 MBIP MAP3K12-binding inhibitory protein 1 yes yes 2 0.00013094 51.013 By MS/MS 1 0.64054 0.67931 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64054 0.67931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4789400 2894200 1895200 0 0 0 0 0 0 4789400 2894200 1895200 0 0 0 0 0 0 0 0 0 37344 4097 39248 197789 201124 201124 1 VQPPTPLLPSVK LTSMQMQLYLQQLQKVQPPTPLLPSVKVQS LQKVQPPTPLLPSVKVQSQPPPPLPPPPHP K V Q V K V 0 0 0 0 0 1 0 0 0 0 2 1 0 0 4 1 1 0 0 2 0 0 12 0 1274.7598 O60885 O60885 938 949 BRD4 Bromodomain-containing protein 4 yes yes 2 0.00061097 68.657 By MS/MS By matching By matching By matching 2 2 1 2 0.47876 0.51949 12.122 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.44459 0.48512 9.6803 2 0 Median 0.53124 0.46772 23.99 2 0 Median 0.47876 0.50447 NaN 1 0 Median 0.63444 0.53773 0.85776 2 0 Median 33230000 22506000 10725000 0 0 0 0 0 0 27562000 18980000 8582000 1428600 857130 571510 2980400 1921200 1059200 1259100 747120 511930 37345 1638 39249 197790;197791;197792;197793;197794;197795;197796 201125;201126;201127;201128 201126 4 VQPSPGSVGTHQLASGGHHIEVQR KFLALQRIHQLFPSRVQPSPGSVGTHQLAS THQLASGGHHIEVQRKEVQARAVFYPLLGL R V Q Q R K 1 1 0 0 0 3 1 4 3 1 1 0 0 0 2 3 1 0 0 3 0 0 24 0 2477.2524 Q96QT6 Q96QT6 766 789 PHF12 PHD finger protein 12 yes yes 5 0.0015227 25.604 By MS/MS By matching 1 1 0.78004 0.7547 27.453 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56566 0.62154 NaN 1 0 Median 1.0757 0.91639 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5061900 2646900 2415000 0 0 0 0 0 0 3437700 1913200 1524500 1624200 733750 890430 0 0 0 0 0 0 37346 3723 39250 197797;197798 201129 201129 1 VQPVIGENGGDAR FALLGTWDEKMECFKVQPVIGENGGDARQR FKVQPVIGENGGDARQRGHEAEESRVMLWK K V Q A R Q 1 1 1 1 0 1 1 3 0 1 0 0 0 0 1 0 0 0 0 2 0 0 13 0 1310.6579 P22059 P22059 655 667 OSBP Oxysterol-binding protein 1 yes yes 2 0.046384 25.437 By MS/MS By matching 1 1 0.60162 0.61585 36.874 2 Median 0.80281 0.7993 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.45085 0.4745 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6118300 4464900 1653400 869740 440650 429090 0 0 0 5248600 4024300 1224300 0 0 0 0 0 0 0 0 0 37347 2096 39251 197799;197800 201130 201130 1 VQPVMAPDVPATPVAPTESQTVLDALQQR QAPTAPSVIPPAVERVQPVMAPDVPATPVA APTESQTVLDALQQRLNKYREAGIQARSGG R V Q Q R L 4 1 0 2 0 4 1 0 0 0 2 0 1 0 5 1 3 0 0 5 0 0 29 0 3057.5805 H7C1U3;H0Y517;Q5T0F9 H7C1U3 183 211 CC2D1B Coiled-coil and C2 domain-containing protein 1B yes no 3 3.2997E-05 29.346 By MS/MS 1 0.61801 0.6712 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61801 0.6712 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1490700 966530 524170 0 0 0 0 0 0 1490700 966530 524170 0 0 0 0 0 0 0 0 0 37348 1260 39252 197801 201131 201131 1 VQPYLDEFQK LRQEMHKDLEEVKQKVQPYLDEFQKKWHEE EVKQKVQPYLDEFQKKWHEEVEIYRQKVAP K V Q Q K K 0 0 0 1 0 2 1 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 10 0 1265.6292 CON__P15497 CON__P15497 120 129 yes yes 2 0.0078107 60.828 By MS/MS By MS/MS By MS/MS 1 1 1 0.12107 0.11257 57.617 3 Median 0.12107 0.11257 NaN 1 1 Median 0.32511 0.27586 NaN 1 1 Median 0.10039 0.094118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38691000 35354000 3337400 17877000 16458000 1418900 1940700 1522900 417840 18874000 17373000 1500700 0 0 0 0 0 0 0 0 0 + 37349 758 39253 197802;197803;197804 201132;201133;201134 201132 3 VQPYLDEFQKK LRQEMHKDLEEVKQKVQPYLDEFQKKWHEE VKQKVQPYLDEFQKKWHEEVEIYRQKVAPL K V Q K K W 0 0 0 1 0 2 1 0 0 0 1 2 0 1 1 0 0 0 1 1 0 0 11 1 1393.7242 CON__P15497 CON__P15497 120 130 yes yes 2;3 0.0010578 82.287 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 0.11121 0.10907 77.221 7 Median 0.07524 0.076407 110.87 2 2 Median 0.27843 0.25492 NaN 1 1 Median 0.10278 0.10226 NaN 1 1 Median 0.12112 0.10907 NaN 1 1 Median 0.057157 0.061484 93.693 2 2 Median NaN NaN NaN 0 0 Median 129720000 119810000 9915900 43963000 41513000 2450500 2101300 1654300 447020 16341000 13905000 2435800 3816400 3331600 484720 63500000 59403000 4097800 0 0 0 + 37350 758 39254 197805;197806;197807;197808;197809;197810;197811;197812 201135;201136;201137;201138;201139;201140;201141;201142 201139 8 VQQACEMVMDILR TNVDKPLRIIGDPYKVQQACEMVMDILRER YKVQQACEMVMDILRERDQGGFGDRNEYGS K V Q L R E 1 1 0 1 1 2 1 0 0 1 1 0 2 0 0 0 0 0 0 2 0 0 13 0 1591.7521 Q92945;A0A087WTP3;M0R0I5;M0QYH3 Q92945 292 304 KHSRP Far upstream element-binding protein 2 yes no 2 5.5866E-05 87.298 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.0467 1.1091 12.617 5 Median NaN NaN NaN 0 0 Median 1.4068 1.219 NaN 1 0 Median 1.0141 1.0839 NaN 1 0 Median 1.3738 1.1325 NaN 1 0 Median 1.0467 1.1091 NaN 1 0 Median 0.98642 0.87133 NaN 1 0 Median 6534400 3086400 3448000 0 0 0 3362800 1472500 1890300 2226600 1101100 1125500 115700 51701 64000 630050 361770 268280 199220 99280 99944 37351 3568 39255 197813;197814;197815;197816;197817 201143;201144;201145 201144 3 VQQAELHTGSLPR PGCVLAKMQLDNPSKVQQAELHTGSLPRIQ SKVQQAELHTGSLPRIQSTALRGEKLHRVF K V Q P R I 1 1 0 0 0 2 1 1 1 0 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1434.7579 Q13085 Q13085 826 838 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes yes 2;3 1.2439E-05 96.015 By MS/MS By MS/MS 1 3 0.99072 0.91851 20.774 2 Median 0.78863 0.79303 NaN 1 0 Median 1.2446 1.0638 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9504200 4880100 4624100 4154100 2402200 1751900 5350100 2477900 2872200 0 0 0 0 0 0 0 0 0 0 0 0 37352 2784 39256 197818;197819;197820;197821 201146;201147;201148;201149;201150 201146 5 VQQGERDFEQISK KIQQAKNEIREWEAKVQQGERDFEQISKTI AKVQQGERDFEQISKTIRKEVGRFEKERVK K V Q S K T 0 1 0 1 0 3 2 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 13 1 1562.7689 O60749 O60749 457 469 SNX2 Sorting nexin-2 yes yes 2;3 0.0061567 56.043 By MS/MS By MS/MS 2 1 1.4599 1.457 21.599 3 Median 1.2128 1.2235 27.012 2 0 Median 1.5896 1.457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15630000 7148600 8481700 12484000 6025900 6458400 3146100 1122700 2023400 0 0 0 0 0 0 0 0 0 0 0 0 37353 1629 39257 197822;197823;197824 201151;201152;201153;201154;201155 201154 5 VQQIQLLGR ARLAAKYLDKELAGRVQQIQLLGRDMKGPA KELAGRVQQIQLLGRDMKGPAHDKLWNQLE R V Q G R D 0 1 0 0 0 3 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1053.6295 F5H1Y4;Q9HD26 F5H1Y4 218 226 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein yes no 2 0.031083 74.127 By MS/MS By matching By matching By matching 1 1 1 1 0.96718 0.89572 25.664 4 Median 0.93156 0.92945 NaN 1 0 Median 1.0042 0.86321 NaN 1 0 Median 1.0293 1.0862 NaN 1 0 Median 0.67535 0.59332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6303300 3220100 3083300 2683600 1476800 1206900 2412000 1186900 1225100 988280 432440 555840 219470 123980 95487 0 0 0 0 0 0 37354 1023 39258 197825;197826;197827;197828 201156 201156 0 VQQLLHICSEHFDSK LVDVCAYAGSGNVLKVQQLLHICSEHFDSK VQQLLHICSEHFDSKEKEEDKDKKEKKDKD K V Q S K E 0 0 0 1 1 2 1 0 2 1 2 1 0 1 0 2 0 0 0 1 0 0 15 0 1839.8938 Q13200;H7C1H2 Q13200 609 623 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 3 0.060749 10.196 By MS/MS 1 1.0557 0.92342 NaN 1 Median NaN NaN NaN 0 0 Median 1.0557 0.92342 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4443700 1852200 2591500 0 0 0 4443700 1852200 2591500 0 0 0 0 0 0 0 0 0 0 0 0 37355 2796 39259 197829 201157 201157 1 VQQLMAK IHKEAEMEEHREHIKVQQLMAKGSDKRRGG EEHREHIKVQQLMAKGSDKRRGGPPGPPIS K V Q A K G 1 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 7 0 816.45276 E7EX73;E9PGM1;E7EUU4;Q04637;H7C044 E7EX73 857 863 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes no 2 0.017598 65.263 By MS/MS By matching 2 1 1.1969 1.0492 27.36 3 Median NaN NaN NaN 0 0 Median 1.1375 0.99307 7.7695 2 0 Median 1.4459 1.5798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3514300 1561000 1953300 0 0 0 3259900 1441400 1818500 254460 119650 134810 0 0 0 0 0 0 0 0 0 37356 894 39260 197830;197831;197832 201158;201159 201158 2 VQQLQISVDQHGDNLK AQRSKAEAEALYQTKVQQLQISVDQHGDNL QQLQISVDQHGDNLKNTKSEIAELNRMIQR K V Q L K N 0 0 1 2 0 4 0 1 1 1 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1820.9381 CON__P19013;P19013 CON__P19013 408 423 KRT4 Keratin, type II cytoskeletal 4 yes no 3 0.031797 24.41 By MS/MS 1 0.22806 0.19245 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.22806 0.19245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1661500 1517100 144380 0 0 0 0 0 0 0 0 0 1661500 1517100 144380 0 0 0 0 0 0 + 37357 761 39261 197833 201160 201160 1 VQQLVPK YTTVTPQIINSKWEKVQQLVPKRDHALLEE IINSKWEKVQQLVPKRDHALLEEQSKQQSN K V Q P K R 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 7 0 810.49634 O43707;F5GXS2;H7C144 O43707 626 632 ACTN4 Alpha-actinin-4 yes no 2 0.0023577 107.74 By matching By MS/MS 1 3 0.90179 0.79585 7.3697 4 Median 0.90256 0.89224 NaN 1 0 Median 0.90102 0.76898 4.3183 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28588000 15019000 13569000 3223100 1667100 1556000 25364000 13352000 12013000 0 0 0 0 0 0 0 0 0 0 0 0 37358 1585 39262 197834;197835;197836;197837 201161;201162;201163;201164 201163 4 VQQQEDEITVLK STSDVQDRLSALESRVQQQEDEITVLKAAL ESRVQQQEDEITVLKAALADVLRRLAISED R V Q L K A 0 0 0 1 0 3 2 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1428.746 Q9HC35;B5MBZ0 Q9HC35 31 42 EML4 Echinoderm microtubule-associated protein-like 4 yes no 2 0.0010099 86.898 By MS/MS 1 1.026 0.88405 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.026 0.88405 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4188200 2097400 2090800 0 0 0 0 0 0 0 0 0 4188200 2097400 2090800 0 0 0 0 0 0 37359 4024 39263 197838 201165 201165 1 VQQTVQDLFGR IGEVILVGGMTRMPKVQQTVQDLFGRAPSK RMPKVQQTVQDLFGRAPSKAVNPDEAVAIG K V Q G R A 0 1 0 1 0 3 0 1 0 0 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1289.6728 P38646 P38646 395 405 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00011278 136.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 1 1 1 2 1.4774 1.3449 31.657 10 Median 1.2596 1.1731 31.431 5 1 Median 1.4813 1.2775 NaN 1 0 Median 1.3747 1.377 NaN 1 0 Median 1.5675 1.3136 NaN 1 0 Median 2.2353 2.2594 24.947 2 1 Median NaN NaN NaN 0 0 Median 357490000 146700000 210780000 202040000 84790000 117250000 71147000 28543000 42604000 63089000 26405000 36684000 5227700 1929300 3298400 15984000 5034700 10950000 0 0 0 37360 2277 39264 197839;197840;197841;197842;197843;197844;197845;197846;197847;197848 201166;201167;201168;201169;201170;201171;201172;201173;201174;201175;201176;201177;201178;201179;201180;201181;201182;201183;201184 201169 19 VQQVQPAMQAVIR VYEQAKARFEEVLSKVQQVQPAMQAVIRTD SKVQQVQPAMQAVIRTDMDQIITSKEHLAS K V Q I R T 2 1 0 0 0 4 0 0 0 1 0 0 1 0 1 0 0 0 0 3 0 0 13 0 1466.8028 Q96TA1 Q96TA1 294 306 FAM129B Niban-like protein 1 yes yes 2 4.7646E-05 142.92 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.94265 0.86234 14.173 5 Median 0.91148 0.86234 NaN 1 0 Median 0.94265 0.81683 NaN 1 0 Median 1.0496 1.1161 NaN 1 0 Median 0.92698 0.79714 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2024 0.98697 NaN 1 0 Median 26171000 13306000 12865000 13016000 7032900 5983300 3556100 1710800 1845300 7840900 3786700 4054300 1048200 485110 563050 0 0 0 710010 290820 419190 37361 3743 39265 197849;197850;197851;197852;197853 201185;201186;201187;201188;201189;201190;201191 201185 7 VQREPLLTLVK GEVAKEWQELDDAEKVQREPLLTLVKEIVP DAEKVQREPLLTLVKEIVPYNMAHNAEHEA K V Q V K E 0 1 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 2 0 0 11 1 1294.7973 Q13200 Q13200 179 189 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2;3 0.00090661 64.297 By MS/MS By matching 2 2 1.1001 1.1243 10.256 4 Median 1.0617 1.1059 5.5496 2 0 Median 1.2099 1.214 14.063 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21425000 10063000 11362000 19505000 9226300 10279000 1919600 836790 1082800 0 0 0 0 0 0 0 0 0 0 0 0 37362 2796 39266 197854;197855;197856;197857 201192;201193;201194;201195 201195 4 VQSDGQIVLVDDWIK TLVTPLQLLLFASKKVQSDGQIVLVDDWIK VQSDGQIVLVDDWIKLQISHEAAACITGLR K V Q I K L 0 0 0 3 0 2 0 1 0 2 1 1 0 0 0 1 0 1 0 3 0 0 15 0 1713.8938 Q08211 Q08211 1075 1089 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00033853 54.471 By MS/MS By MS/MS 1 2 1.1675 1.246 54.433 3 Plateau NaN NaN NaN 0 0 Median 1.2081 1.0602 NaN 1 0 Median 0.71057 0.75082 71.639 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17589000 7924000 9664700 0 0 0 2265700 985520 1280100 15323000 6938500 8384500 0 0 0 0 0 0 0 0 0 37363 2736 39267 197858;197859;197860 201196;201197;201198;201199 201197 4 VQSFQMK DEQEKLLDEAIQAVKVQSFQMKRCLDKNKL DEAIQAVKVQSFQMKRCLDKNKLMDALKHA K V Q M K R 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 1 0 0 0 1 0 0 7 0 866.43202 Q96QK1;I3L4S0;A0A1W2PP10;A0A3B3ITD4 Q96QK1 25 31 VPS35 Vacuolar protein sorting-associated protein 35 yes no 2 0.026776 52.683 By matching By MS/MS 1 1 1.1826 1.0992 10.053 2 Median 1.0418 1.0238 NaN 1 0 Median 1.3425 1.1802 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5372200 2417300 2954900 2198400 1103100 1095400 3173700 1314200 1859500 0 0 0 0 0 0 0 0 0 0 0 0 37364 3722 39268 197861;197862 201200;201201 201200 2 VQSGNINAAK VLVLSQNTKRESGRKVQSGNINAAKTIADI ESGRKVQSGNINAAKTIADIIRTCLGPKSM K V Q A K T 2 0 2 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1000.5302 P49368;E9PRC8;Q5SZX6;E9PM09;Q5SZW8;Q5SZX9 P49368 22 31 CCT3 T-complex protein 1 subunit gamma yes no 2 0.037233 31.934 By matching By MS/MS 1 1 1.1354 1.0381 8.9366 2 Median 1.1415 1.1058 NaN 1 0 Median 1.1293 0.97451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1873300 919950 953350 595060 289390 305670 1278200 630560 647680 0 0 0 0 0 0 0 0 0 0 0 0 37365 2379 39269 197863;197864 201202 201202 1 VQSGSESVIQEYVDLR KAQLEPVASPAKKPKVQSGSESVIQEYVDL QSGSESVIQEYVDLRTHYSELTTLTSQYIK K V Q L R T 0 1 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 1 3 0 0 16 0 1807.8952 Q15149;H0YDN1 Q15149 1442 1457 PLEC Plectin yes no 2 7.0766E-10 154.28 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2959 1.2613 8.4433 4 Median 1.2304 1.1946 NaN 1 0 Median 1.5981 1.3151 NaN 1 0 Median 1.1194 1.2098 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3649 1.433 NaN 1 1 Median NaN NaN NaN 0 0 Median 43349000 18089000 25260000 27082000 11936000 15147000 7990500 2476700 5513800 4379700 2104800 2274800 0 0 0 3896600 1572400 2324200 0 0 0 37366 2933 39270 197865;197866;197867;197868 201203;201204;201205;201206;201207;201208;201209;201210 201203 8 VQSLNVDAIIR LWHELCDLISQNPDKVQSLNVDAIIRGGLT NPDKVQSLNVDAIIRGGLTRFTDQLGKLWC K V Q I R G 1 1 1 1 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1226.6983 Q9HCS7 Q9HCS7 235 245 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.00019545 75.378 By MS/MS By matching 1 1 0.88417 0.84071 15.391 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87401 0.93737 NaN 1 0 Median 0.89445 0.75402 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3044100 1653300 1390800 0 0 0 0 0 0 2719500 1494500 1225000 324520 158730 165780 0 0 0 0 0 0 37367 4032 39271 197869;197870 201211 201211 1 VQSLQATFGTFESILR QREELGQGLQGVEQKVQSLQATFGTFESIL QSLQATFGTFESILRSSQHKQDLTEKAVKQ K V Q L R S 1 1 0 0 0 2 1 1 0 1 2 0 0 2 0 2 2 0 0 1 0 0 16 0 1795.9468 Q07065 Q07065 162 177 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00079928 42.095 By MS/MS By MS/MS By matching 1 1 1 1.1353 1.0764 23.861 3 Median 1.1353 1.0764 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2624 1.3384 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82293 0.83097 NaN 1 0 Median NaN NaN NaN 0 0 Median 15388000 6939700 8448500 13465000 6159800 7305000 0 0 0 1834100 732800 1101300 0 0 0 89303 47138 42165 0 0 0 37368 2730 39272 197871;197872;197873 201212;201213 201212 2 VQSLQTALEK TQMSTTSKLEEAEHKVQSLQTALEKTRTEL EAEHKVQSLQTALEKTRTELFDLKTKYDEE K V Q E K T 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1115.6186 Q13948;A0A2R8Y8D0;A0A2R8Y852;A0A2R8YDI1 A0A2R8Y852 208 217 CUX1 Protein CASP no no 2 0.00036109 82.749 By MS/MS By MS/MS 2 1 1.0481 1.1239 62.687 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7033 1.8446 70.065 2 0 Median 1.0481 0.94843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17659000 7225400 10434000 0 0 0 0 0 0 15419000 6148600 9270100 2240300 1076800 1163500 0 0 0 0 0 0 37369 388;2847 39273 197874;197875;197876 201214;201215;201216 201214 3 VQSLVDTIR SVLIRPLPSVLDPAKVQSLVDTIREDPDSV VLDPAKVQSLVDTIREDPDSVPPIDVLWIK K V Q I R E 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 2 0 0 9 0 1029.5819 Q9BYN0 Q9BYN0 62 70 SRXN1 Sulfiredoxin-1 yes yes 2 4.7654E-07 163.99 By MS/MS By MS/MS By matching 1 1 1 1.0624 1.1959 19.704 3 Plateau 0.9674 0.94203 NaN 1 1 Median 1.458 1.2406 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0624 0.84682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20930000 9833700 11097000 6115300 3400600 2714600 14450000 6262900 8186800 0 0 0 365500 170180 195330 0 0 0 0 0 0 37370 3893 39274 197877;197878;197879 201217;201218;201219 201219 3 VQSTAFFSGDQASTDKEEDYIR TVAALKTNNVNVSSRVQSTAFFSGDQASTD SGDQASTDKEEDYIRYAHGLISDYIPKELS R V Q I R Y 2 1 0 3 0 2 2 1 0 1 0 1 0 2 0 3 2 0 1 1 0 0 22 1 2493.1296 Q5TBB1;A0A2R8YGP2;A0A2R8Y6Q6;A0A087WXR7;A0A2R8YCX2;A0A2R8Y6M7;A0A2R8Y7R8;A0A2R8YEH2;A0A2R8Y6Y1;A0A2R8YCJ4;A0A2R8Y761;A0A087WZJ6;A0A2R8Y7Q3;A0A2R8Y883;A0A2R8YCP1;A0A2R8YE60;A0A2R8Y687;A0A2R8Y4S2;A0A2R8YEC1;A0A2R8Y459;A0A2R8YEU9 Q5TBB1 189 210 RNASEH2B Ribonuclease H2 subunit B yes no 3 3.8341E-15 96.131 By matching By matching By MS/MS By matching 1 1 1 2 1.0261 0.98813 24.536 5 Median 1.0456 1.1202 NaN 1 0 Median 1.7907 1.6403 NaN 1 0 Median 0.91289 0.98813 NaN 1 0 Median 1.0047 0.91286 2.3774 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33128000 16394000 16734000 5268700 2505600 2763100 991280 462790 528490 24086000 12034000 12052000 2782300 1391800 1390500 0 0 0 0 0 0 37371 69 39275 197880;197881;197882;197883;197884 201220;201221 201221 2 VQSVEQIR RRATWLHQALREGTRVQSVEQIREVASGAA ALREGTRVQSVEQIREVASGAARIRGETLG R V Q I R E 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 8 0 957.52434 P56545;A0A087WYL1;Q13363;D6RAX2;E7ESU7;E7EPF8 Q13363 156 163 CTBP2;CTBP1 C-terminal-binding protein 2;C-terminal-binding protein 1 no no 2 0.00080743 124.08 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2811 1.1807 11.641 5 Median 1.2811 1.2711 NaN 1 0 Median 1.3779 1.1807 NaN 1 0 Median 0.98511 1.0032 5.8471 2 0 Median 1.4182 1.2265 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28324000 13442000 14882000 1454100 602640 851500 2032200 880480 1151700 18582000 9286900 9295300 6255500 2672100 3583400 0 0 0 0 0 0 37372 2514;2808 39276 197885;197886;197887;197888;197889;197890 201222;201223;201224;201225;201226;201227;201228;201229;201230;201231;201232;201233 201228 12 VQTAVTMGK NFLRMSARVDAVAARVQTAVTMGKVTKSMA DAVAARVQTAVTMGKVTKSMAGVVKSMDAT R V Q G K V 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 2 0 0 9 0 933.49535 Q7LBR1 Q7LBR1 79 87 CHMP1B Charged multivesicular body protein 1b yes yes 2 0.0088323 49.715 By MS/MS By MS/MS 1 1 1.2253 1.0802 3.3476 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1713 1.1061 NaN 1 0 Median 1.2819 1.055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5593600 2612200 2981400 0 0 0 0 0 0 5164600 2436800 2727800 429010 175360 253650 0 0 0 0 0 0 37373 3231 39277 197891;197892 201234;201235;201236 201235 3 VQTEPVTSMTIIEQVGK SERLVTEEVLSVETRVQTEPVTSMTIIEQV TEPVTSMTIIEQVGKVHVLPLLQVQVDSAQ R V Q G K V 0 0 0 0 0 2 2 1 0 2 0 1 1 0 1 1 3 0 0 3 0 0 17 0 1858.971 P52739 P52739 461 477 ZNF131 Zinc finger protein 131 yes yes 2 0.0058571 28.806 By MS/MS 1 0.89959 0.95622 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89959 0.95622 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2766300 1306300 1460100 0 0 0 0 0 0 2766300 1306300 1460100 0 0 0 0 0 0 0 0 0 37374 2456 39278 197893 201237;201238 201237 2 VQTERPQPQTLQLDFLMK IPENTVIYGADCLRRVQTERPQPQTLQLDF ERPQPQTLQLDFLMKILPNYHHLKKTMKGS R V Q M K I 0 1 0 1 0 4 1 0 0 0 3 1 1 1 2 0 2 0 0 1 0 0 18 1 2171.1409 O00399 O00399 152 169 DCTN6 Dynactin subunit 6 yes yes 3 8.2947E-05 42.382 By MS/MS By matching 1 1 0.87151 0.86338 2.4429 2 Median 0.81257 0.84859 NaN 1 0 Median 0.93472 0.87842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14232000 7292200 6940100 13330000 6810300 6520100 901930 481920 420010 0 0 0 0 0 0 0 0 0 0 0 0 37375 1458 39279 197894;197895 201239;201240 201239 2 VQTEVLQK EKAKQLRALRKYGKKVQTEVLQKRQQEKAH LRKYGKKVQTEVLQKRQQEKAHMMNAIKKY K V Q Q K R 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 943.53385 H7C2Q8;Q99848 H7C2Q8 235 242 EBNA1BP2 Probable rRNA-processing protein EBP2 yes no 2 0.024653 43.246 By MS/MS By MS/MS 1 1 1.3878 1.2646 14.988 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1448 1.1374 NaN 1 0 Median 1.6825 1.406 NaN 1 0 Median 5295800 2543900 2751800 0 0 0 0 0 0 0 0 0 0 0 0 3953300 2018400 1935000 1342400 525580 816830 37376 1262 39280 197896;197897 201241;201242;201243 201241 3 VQTFPFLGR NFDLPYLISRAQTLKVQTFPFLGRVAGLCS RAQTLKVQTFPFLGRVAGLCSNIRDSSFQS K V Q G R V 0 1 0 0 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 1 0 0 9 0 1063.5815 M0R2B7;P28340;A0A087WYJ2;M0QZR8;A0A2R8Y705;A0A2R8Y7K6 M0R2B7 415 423 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.025538 37.558 By MS/MS By matching By matching By matching 1 1 1 1 0.87209 0.85678 15.817 4 Median 0.65152 0.62988 NaN 1 0 Median 1.0169 0.86986 NaN 1 0 Median 0.77358 0.84389 NaN 1 0 Median 0.98315 0.87516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10274000 5686500 4588000 5873900 3340700 2533300 2364200 1117000 1247200 1904200 1162800 741400 132140 66062 66074 0 0 0 0 0 0 37377 1436 39281 197898;197899;197900;197901 201244;201245 201244 2 VQTLQFHPFEAQTLISGSYDK SLGKPAASLAVHTDKVQTLQFHPFEAQTLI HPFEAQTLISGSYDKSVALYDCRSPDESHR K V Q D K S 1 0 0 1 0 3 1 1 1 1 2 1 0 2 1 2 2 0 1 1 0 0 21 0 2408.2012 B4DJV5;Q13610 B4DJV5 240 260 PWP1 Periodic tryptophan protein 1 homolog yes no 3 0.028482 13.188 By MS/MS By matching 1 1 1.1079 1.0992 4.611 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0342 1.0639 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1868 1.1356 NaN 1 0 Median NaN NaN NaN 0 0 Median 5073300 2528600 2544700 0 0 0 0 0 0 2722800 1542100 1180700 0 0 0 2350500 986520 1364000 0 0 0 37378 595 39282 197902;197903 201246 201246 1 VQTLSNQPLLK AAYNPGQAVPWNAVKVQTLSNQPLLKSPAP NAVKVQTLSNQPLLKSPAPPLLHVAALGQK K V Q L K S 0 0 1 0 0 2 0 0 0 0 3 1 0 0 1 1 1 0 0 1 0 0 11 0 1239.7187 Q8N163;E5RFJ3;H0YC69;E5RGU7;H0YC58 Q8N163 113 123 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 0.00054228 67.563 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.89234 0.85055 27.425 6 Median 0.79145 0.76484 NaN 1 1 Median 1.0372 0.87674 NaN 1 0 Median 0.59117 0.63663 46.66 2 2 Median 1.0824 0.9055 13.144 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65424000 36410000 29013000 14050000 7409200 6640400 13460000 6459500 7000800 32688000 20071000 12617000 5225900 2470400 2755500 0 0 0 0 0 0 37379 3354 39283 197904;197905;197906;197907;197908;197909 201247;201248;201249;201250;201251;201252;201253 201251 7 VQTPEVDVK KSRFKLPKFNFSGSKVQTPEVDVKGKKPDI NFSGSKVQTPEVDVKGKKPDIDITGPKVDI K V Q V K G 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 3 0 0 9 0 1013.5393 Q09666 Q09666 3364 3372 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00055314 114.99 By MS/MS By MS/MS 1 2 1.0603 1.0279 7.8372 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0603 1.1336 NaN 1 0 Median 1.0485 0.99898 4.0413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26967000 13332000 13635000 0 0 0 0 0 0 11494000 5612500 5881800 15473000 7719700 7753300 0 0 0 0 0 0 37380 2749 39284 197910;197911;197912 201254;201255;201256;201257;201258;201259;201260;201261 201260 8 VQTPLLR EVEEVETPNSTPPRRVQTPLLRATVASSTQ PNSTPPRRVQTPLLRATVASSTQKFQDLGV R V Q L R A 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 7 0 825.50724 Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8 47 53 SEPT9 Septin-9 yes no 2 0.0073411 89.673 By MS/MS By matching 1 1 1.0007 0.92737 9.4641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96445 0.99156 NaN 1 0 Median 1.0383 0.86734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8222400 4110800 4111600 0 0 0 0 0 0 6914500 3517400 3397200 1307900 593430 714450 0 0 0 0 0 0 37381 4276 39285 197913;197914 201262 201262 1 VQTVLGLVEPSK ______________________________ SGKVQTVLGLVEPSKLGRTLTHEHLAMTFD K V Q S K L 0 0 0 0 0 1 1 1 0 0 2 1 0 0 1 1 1 0 0 3 0 0 12 0 1268.734 Q96BW5 Q96BW5 8 19 PTER Phosphotriesterase-related protein yes yes 2 0.0015234 51.927 By MS/MS 1 0.70855 0.66317 NaN 1 Median 0.70855 0.66317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3533200 1656200 1876900 3533200 1656200 1876900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37382 3611 39286 197915 201263 201263 1 VQVALEELQDLK LELTDTGLLSGSEERVQVALEELQDLKGVW EERVQVALEELQDLKGVWSELSKVWEQIDQ R V Q L K G 1 0 0 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1383.7609 Q14204 Q14204 1319 1330 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.0203E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.2328 1.1168 42.872 6 Median 0.79863 0.80219 NaN 1 1 Median 1.2328 1.0986 8.842 2 0 Median 1.6414 1.7257 68.05 2 0 Median 1.4425 1.3839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 142950000 75147000 67800000 60443000 36368000 24075000 52016000 24095000 27921000 28669000 13935000 14734000 1818900 748660 1070200 0 0 0 0 0 0 37383 2865 39287 197916;197917;197918;197919;197920;197921 201264;201265;201266;201267 201264 4 VQVALGNISSK GGARGSRKVADGLVKVQVALGNISSKRERV GLVKVQVALGNISSKRERVKILYKKIEDLI K V Q S K R 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1114.6346 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 40 50 DCTN3 Dynactin subunit 3 yes no 2 0.00018403 77.379 By matching By MS/MS By MS/MS By MS/MS By matching By matching 2 3 1 1 1 2 1.2368 1.1194 18.492 10 Median 1.1496 1.0517 13.152 2 0 Median 1.3363 1.2853 15.872 3 0 Plateau 0.76894 0.7219 NaN 1 0 Median 1.2533 1.0349 NaN 1 0 Median 1.0017 1.1826 NaN 1 0 Median 1.2386 1.061 13.169 2 0 Median 33162000 16965000 16198000 4402600 2371000 2031500 17145000 8244000 8901400 8753800 4943100 3810800 1003400 413430 589970 1135800 676940 458870 721480 316350 405130 37384 1708 39288 197922;197923;197924;197925;197926;197927;197928;197929;197930;197931 201268;201269;201270;201271;201272;201273 201268 6 VQVALGNISSKR GGARGSRKVADGLVKVQVALGNISSKRERV LVKVQVALGNISSKRERVKILYKKIEDLIK K V Q K R E 1 1 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 0 0 2 0 0 12 1 1270.7357 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 40 51 DCTN3 Dynactin subunit 3 yes no 2;3 0.00024826 79.974 By MS/MS By MS/MS By matching By MS/MS 3 1 2 1 1.2552 1.2984 16.998 7 Median 1.1385 1.2291 9.4691 3 0 Plateau 1.5173 1.3383 NaN 1 0 Median 1.0288 1.0596 28.744 2 0 Median 1.6116 1.4266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17209000 7879800 9329400 9253900 4391600 4862300 757290 354810 402480 5527900 2505600 3022300 1670100 627810 1042200 0 0 0 0 0 0 37385 1708 39289 197932;197933;197934;197935;197936;197937;197938 201274;201275;201276 201276 3 VQVAQILGPLSITNK PVFALFVPFYCSIPRVQVAQILGPLSITNK VQVAQILGPLSITNKTLIYILGLQLFTSGS R V Q N K T 1 0 1 0 0 2 0 1 0 2 2 1 0 0 1 1 1 0 0 2 0 0 15 0 1579.9297 Q8NBM4 Q8NBM4 148 162 UBAC2 Ubiquitin-associated domain-containing protein 2 yes yes 2 0.00035654 57.836 By MS/MS 1 1.2712 1.1093 NaN 1 Median NaN NaN NaN 0 0 Median 1.2712 1.1093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2816700 1197100 1619600 0 0 0 2816700 1197100 1619600 0 0 0 0 0 0 0 0 0 0 0 0 37386 3406 39290 197939 201277 201277 1 VQVEYKGETK KHWPFMVVNDAGRPKVQVEYKGETKSFYPE AGRPKVQVEYKGETKSFYPEEVSSMVLTKM K V Q T K S 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 1 0 1 2 0 0 10 1 1179.6136 P11142;E9PKE3;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652 P11142 103 112 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 no no 2 0.003346 97.431 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 4 2 2 4 3 1.0661 1.043 12.934 20 Median 1.0827 1.1046 13.619 5 0 Median 1.0348 0.94763 14.521 4 0 Median 1.0426 1.1326 7.1987 2 0 Median 1.0741 1.0202 12.937 2 0 Median 0.88454 0.92198 15.64 4 0 Median 1.198 1.0677 5.9907 3 0 Median 109310000 51599000 57707000 39117000 17820000 21297000 38808000 18457000 20352000 15582000 7515600 8065900 983060 455520 527540 9565500 4895200 4670300 5251200 2456300 2794900 37387 1950;2483 39291 197940;197941;197942;197943;197944;197945;197946;197947;197948;197949;197950;197951;197952;197953;197954;197955;197956;197957;197958;197959 201278;201279;201280;201281;201282;201283;201284;201285;201286;201287;201288;201289 201282 12 VQVLAAQLLSDMK LRGWTGKEAPGPNPRVQVLAAQLLSDMKLQ PRVQVLAAQLLSDMKLQDGKRLLGPQWLDY R V Q M K L 2 0 0 1 0 2 0 0 0 0 3 1 1 0 0 1 0 0 0 2 0 0 13 0 1414.7854 Q6P9B6;H3BM75 Q6P9B6 162 174 TLDC1 TLD domain-containing protein 1 yes no 2 0.0038536 42.743 By matching By MS/MS By matching 1 1 1 0.91853 0.81756 3.9652 3 Median 0.81913 0.79269 NaN 1 0 Median 0.99971 0.85759 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91853 0.81756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4449100 2365000 2084100 2033900 1038900 995000 2297500 1249900 1047700 0 0 0 117640 76198 41439 0 0 0 0 0 0 37388 3165 39292 197960;197961;197962 201290 201290 1 VQVMVPEAETR AHGSFCFKANPGTYKVQVMVPEAETRAGLT GTYKVQVMVPEAETRAGLTLKPQTFPLTVT K V Q T R A 1 1 0 0 0 1 2 0 0 0 0 0 1 0 1 0 1 0 0 3 0 0 11 0 1257.6387 A0A0G2JN29;A0A087X117;Q15155;A0A0G2JP90;A0A087WW46;H3BPS9;J3KN36;P69849;Q5JPE7 J3KN36 464 474 NOMO1;NOMO2;NOMO3 Nodal modulator 1;Nodal modulator 3;Nodal modulator 2 no no 2 0.00042019 82.749 By MS/MS By matching 2 1 0.71299 0.59327 35.443 3 Median NaN NaN NaN 0 0 Median 0.9219 0.77486 37.764 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61994 0.51751 NaN 1 0 Median 21868000 12389000 9478800 0 0 0 21284000 12078000 9205900 0 0 0 0 0 0 0 0 0 583630 310740 272890 37389 117;1301 39293 197963;197964;197965 201291;201292;201293 201293 3 VQVPNMQDK EEEFLRRNKGPVSIKVQVPNMQDKTEWKLN GPVSIKVQVPNMQDKTEWKLNGQVLVFTLP K V Q D K T 0 0 1 1 0 2 0 0 0 0 0 1 1 0 1 0 0 0 0 2 0 0 9 0 1057.5226 Q15459 Q15459 709 717 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.03276 47.96 By MS/MS 1 1.1392 0.98241 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1392 0.98241 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4398100 1008900 3389200 0 0 0 0 0 0 0 0 0 4398100 1008900 3389200 0 0 0 0 0 0 37390 2954 39294 197966 201294 201294 1 VQVPNMQDKTEWK EEEFLRRNKGPVSIKVQVPNMQDKTEWKLN IKVQVPNMQDKTEWKLNGQVLVFTLPLTDQ K V Q W K L 0 0 1 1 0 2 1 0 0 0 0 2 1 0 1 0 1 1 0 2 0 0 13 1 1601.7872 Q15459 Q15459 709 721 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.00031532 61.212 By MS/MS By matching 1 1 0.89692 1.0138 11.824 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9654 1.1023 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8333 0.93253 NaN 1 0 Median NaN NaN NaN 0 0 Median 28827000 15972000 12856000 0 0 0 0 0 0 10180000 4993000 5187200 0 0 0 18647000 10979000 7668300 0 0 0 37391 2954 39295 197967;197968 201295 201295 1 VQVQASQLSSLPQMVASTR SQPAQLALHVPTPGKVQVQASQLSSLPQMV ASQLSSLPQMVASTRLPVDPAPPCPRPLPT K V Q T R L 2 1 0 0 0 4 0 0 0 0 2 0 1 0 1 4 1 0 0 3 0 0 19 0 2029.0626 Q96L91;A0A0A0MR80;A0A0A0MR72 Q96L91 667 685 EP400 E1A-binding protein p400 yes no 2;3 1.6023E-09 89.959 By MS/MS 2 0.76447 0.83452 5.9802 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76447 0.83452 5.9802 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6824300 3811100 3013200 0 0 0 0 0 0 6824300 3811100 3013200 0 0 0 0 0 0 0 0 0 37392 3700 39296 197969;197970 201296;201297;201298 201297 2 VQVQDNEGCPVEALVK EFTVDAKHGGKAPLRVQVQDNEGCPVEALV QVQDNEGCPVEALVKDNGNGTYSCSYVPRK R V Q V K D 1 0 1 1 1 2 2 1 0 0 1 1 0 0 1 0 0 0 0 4 0 0 16 0 1783.8774 P21333;Q60FE5;A0A087WWY3 P21333 709 724 FLNA Filamin-A no no 2 3.6023E-10 117.79 By MS/MS 1 0.74767 0.66755 NaN 1 Median NaN NaN NaN 0 0 Median 0.74767 0.66755 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33112000 19071000 14041000 0 0 0 33112000 19071000 14041000 0 0 0 0 0 0 0 0 0 0 0 0 37393 2088;3120 39297 197971 201299;201300;201301 201300 3 VQVQVVER QLQVAKTKQQIEEQRVQVQVVERAQQVAVQ QQIEEQRVQVQVVERAQQVAVQEQEIARRE R V Q E R A 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 8 0 955.54508 O75955;A0A140T9R1;A0A140T9W4;A2AB09;A0A140T9X0;A0A140T907 O75955 254 261 FLOT1 Flotillin-1 yes no 2 9.7029E-05 133.55 By MS/MS By MS/MS By MS/MS 1 2 1 1.4049 1.2936 26.148 4 Median 0.9643 0.94228 NaN 1 1 Median 1.7597 1.5231 22.665 2 0 Median 1.2838 1.2897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16579000 7131000 9448400 5607500 2595500 3012100 7424000 2991300 4432800 3547800 1544300 2003500 0 0 0 0 0 0 0 0 0 37394 1712 39298 197972;197973;197974;197975 201302;201303;201304;201305;201306 201302 5 VQVSEAGVHRPHVGGIHGR GPIPGIPVGSTWRFRVQVSEAGVHRPHVGG EAGVHRPHVGGIHGRSNDGAYSLVLAGGFA R V Q G R S 1 2 0 0 0 1 1 4 3 1 0 0 0 0 1 1 0 0 0 4 0 0 19 1 1991.0562 Q96PU4 Q96PU4 463 481 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 3;4 0.00053023 32.55 By matching By MS/MS 1 2 0.96068 0.85125 2.317 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71171 0.82236 NaN 1 0 Median 0.96525 0.85531 0.67189 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3957700 1966100 1991600 0 0 0 0 0 0 1309600 728080 581550 2648100 1238000 1410100 0 0 0 0 0 0 37395 3713 39299 197976;197977;197978 201307;201308;201309 201308 3 VQVSESGVHRPHVAGIHGR GPIPGIPVGTMWRFRVQVSESGVHRPHVAG ESGVHRPHVAGIHGRSNDGAYSLVLAGGYE R V Q G R S 1 2 0 0 0 1 1 3 3 1 0 0 0 0 1 2 0 0 0 4 0 0 19 1 2021.0667 A0A087WVR3;A0A087WTW0;Q96T88;A0A087WWG9 A0A087WVR3 447 465 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 3;4;5 1.451E-18 111.92 By MS/MS By MS/MS By MS/MS By MS/MS 8 11 6 8 0.78381 0.75557 12.316 33 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69179 0.76646 13.873 8 0 Median 0.81822 0.75281 9.7556 11 0 Median 0.74892 0.80652 9.8597 6 1 Median 0.77453 0.67258 9.38 8 0 Median 130920000 73337000 57584000 0 0 0 0 0 0 41832000 24137000 17695000 49812000 27002000 22810000 31734000 18223000 13511000 7543000 3975300 3567700 37396 20 39300 197979;197980;197981;197982;197983;197984;197985;197986;197987;197988;197989;197990;197991;197992;197993;197994;197995;197996;197997;197998;197999;198000;198001;198002;198003;198004;198005;198006;198007;198008;198009;198010;198011 201310;201311;201312;201313;201314;201315;201316;201317;201318;201319;201320;201321;201322;201323;201324;201325;201326;201327;201328;201329;201330;201331;201332;201333;201334;201335;201336;201337;201338;201339;201340;201341;201342;201343;201344;201345;201346;201347 201333 38 VQVSLDEHFSK PSLQSIYTLDAAISKVQVSLDEHFSKMAAE AISKVQVSLDEHFSKMAAETDPHKSSEITK K V Q S K M 0 0 0 1 0 1 1 0 1 0 1 1 0 1 0 2 0 0 0 2 0 0 11 0 1287.6459 Q5T4S7 Q5T4S7 1131 1141 UBR4 E3 ubiquitin-protein ligase UBR4 yes yes 2;3 0.00015616 90.15 By MS/MS By MS/MS 1 3 0.94069 0.8376 47.626 4 Median 1.162 1.1639 NaN 1 0 Median 0.8286 0.7385 46.046 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50730000 24581000 26149000 11338000 5076400 6261900 39392000 19505000 19887000 0 0 0 0 0 0 0 0 0 0 0 0 37397 3089 39301 198012;198013;198014;198015 201348;201349;201350;201351;201352 201351 5 VQVSYKGETK KHWPFQVINDGDKPKVQVSYKGETKAFYPE GDKPKVQVSYKGETKAFYPEEISSMVLTKM K V Q T K A 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 1 1 0 1 2 0 0 10 1 1137.603 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 104 113 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 6.6871E-05 150.35 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 4 1 1 5 4 1.3691 1.2947 20.497 18 Median 1.4664 1.3641 29.534 3 0 Median 1.3079 1.1666 11.441 4 0 Median 1.3388 1.5003 NaN 1 0 Median 1.3519 1.2483 NaN 1 0 Median 1.4549 1.5191 20.034 5 0 Median 1.3455 1.208 17.326 4 0 Median 89103000 37955000 51149000 38822000 16044000 22778000 29037000 12767000 16270000 7232000 3035800 4196200 266720 99882 166840 8603400 3814800 4788600 5142600 2192900 2949700 37398 278 39302 198016;198017;198018;198019;198020;198021;198022;198023;198024;198025;198026;198027;198028;198029;198030;198031;198032;198033 201353;201354;201355;201356;201357;201358;201359;201360 201358 8 VQVVGTYR ILDDDLVDKAKPGDRVQVVGTYRCLPGKKG KAKPGDRVQVVGTYRCLPGKKGGYTSGTFR R V Q Y R C 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 3 0 0 8 0 920.50797 P25205;J3KQ69;A0A499FHX9 P25205 235 242 MCM3 DNA replication licensing factor MCM3 yes no 2 0.0022926 137.18 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 1 1.1371 1.0252 10.281 9 Median 1.0186 0.99736 17.443 2 0 Median 1.1859 1.0252 10.927 5 0 Median 0.86766 0.92402 NaN 1 0 Median 1.1953 1.0297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37849000 18834000 19015000 7866900 4291400 3575500 21869000 10369000 11500000 6612900 3457700 3155200 1500900 716310 784630 0 0 0 0 0 0 37399 2129 39303 198034;198035;198036;198037;198038;198039;198040;198041;198042 201361;201362;201363;201364;201365;201366;201367;201368 201366 8 VQVYLHESTQDELAR YMKKAEARLLEEQRRVQVYLHESTQDELAR VQVYLHESTQDELARKCEQVLIEKHLEIFH R V Q A R K 1 1 0 1 0 2 2 0 1 0 2 0 0 0 0 1 1 0 1 2 0 0 15 0 1786.885 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJR3;A0A590UJ56;A0A590UJA0 A0A0C4DGX4 251 265 CUL1 Cullin-1 yes no 2;3 7.3953E-05 63.894 By MS/MS By MS/MS By MS/MS 1 2 1 1.9676 1.8867 37.297 4 Median 1.5288 1.4552 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.5584 2.7145 28.912 2 2 Median 1.8669 1.6087 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63999000 18162000 45837000 6227600 2446100 3781500 0 0 0 55035000 14893000 40143000 2736000 822920 1913100 0 0 0 0 0 0 37400 256 39304 198043;198044;198045;198046 201369;201370;201371;201372 201370 4 VQVYQEPNR LSKKIAERLGVEMGKVQVYQEPNRETRVQI GVEMGKVQVYQEPNRETRVQIQESVRGKDV K V Q N R E 0 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 9 0 1131.5673 O60256;E7EPA1;C9JJS3;C9K0K7;C9JDU5;C9JDH0;E7EW35;I3L331;I3L164 O60256 49 57 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 yes no 2 0.034001 35.295 By MS/MS 1 0.73062 0.74816 NaN 1 Median 0.73062 0.74816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 811110 462590 348530 811110 462590 348530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37401 1607 39305 198047 201373 201373 1 VQWGVFVPR EPRPLYIQKGISREKVQWGVFVPRDVPESF GISREKVQWGVFVPRDVPESFTSEAYQWLN K V Q P R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 3 0 0 9 0 1086.5974 Q8IWA0 Q8IWA0 629 637 WDR75 WD repeat-containing protein 75 yes yes 2 0.067126 41.652 By MS/MS 1 0.63301 0.68798 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63301 0.68798 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3770300 2388400 1381800 0 0 0 0 0 0 3770300 2388400 1381800 0 0 0 0 0 0 0 0 0 37402 3322 39306 198048 201374 201374 1 VQYAPERPGPQPTAETTR EKIHKRNSVRLVIRKVQYAPERPGPQPTAE APERPGPQPTAETTRQFLMSDKPLHLEASL K V Q T R Q 2 2 0 0 0 2 2 1 0 0 0 0 0 0 4 0 3 0 1 1 0 0 18 1 1996.9967 P49407;E9PM35 P49407 171 188 ARRB1 Beta-arrestin-1 yes no 3 0.00075935 33.308 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.54548 0.50881 8.5258 5 Median 0.47946 0.48418 NaN 1 1 Median 0.55158 0.56521 NaN 1 0 Median 0.4461 0.48301 NaN 1 0 Median 0.58543 0.54234 9.0256 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12864000 8408500 4455200 2503000 1756900 746120 1768400 1131300 637150 4362700 3109700 1253000 4229700 2410700 1818900 0 0 0 0 0 0 37403 2381 39307 198049;198050;198051;198052;198053 201375;201376;201377;201378;201379 201376 5 VQYEGFRPGMYVR QLNRAEFEDQDDEARVQYEGFRPGMYVRIE ARVQYEGFRPGMYVRIEIENVPCEFVQNFD R V Q V R I 0 2 0 0 0 1 1 2 0 0 0 0 1 1 1 0 0 0 2 2 0 0 13 1 1600.782 Q14692 Q14692 875 887 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.00064022 49.423 By matching By MS/MS By MS/MS 2 1 3 1.0235 1.1393 24.121 6 Median 1.0035 1.0326 50.678 2 0 Median NaN NaN NaN 0 0 Median 0.96395 1.1724 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0304 1.1072 8.5784 3 0 Median NaN NaN NaN 0 0 Median 28805000 13942000 14863000 3996500 1960200 2036300 0 0 0 3439500 1928100 1511300 0 0 0 21369000 10054000 11315000 0 0 0 37404 2893 39308 198054;198055;198056;198057;198058;198059 201380;201381;201382;201383 201381 4 VQYPDYYAIIKEPIDLK SGRLISELFQKLPSKVQYPDYYAIIKEPID YPDYYAIIKEPIDLKTIAQRIQNGSYKSIH K V Q L K T 1 0 0 2 0 1 1 0 0 3 1 2 0 0 2 0 0 0 3 1 0 0 17 1 2067.0928 Q86U86;E7EVG2;H0Y5B5 Q86U86 215 231 PBRM1 Protein polybromo-1 yes no 3 0.0011342 33.308 By MS/MS 2 0.54225 0.62159 28.119 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54225 0.62159 28.119 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10161000 5981300 4179900 0 0 0 0 0 0 10161000 5981300 4179900 0 0 0 0 0 0 0 0 0 37405 3273 39309 198060;198061 201384;201385;201386 201385 3 VQYTETEPYHNYR EIERFWRGGQYENFRVQYTETEPYHNYRER FRVQYTETEPYHNYRERERERERENRQRER R V Q Y R E 0 1 1 0 0 1 2 0 1 0 0 0 0 0 1 0 2 0 3 1 0 0 13 0 1698.7638 Q86VM9;E7ERS3 Q86VM9 390 402 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes no 3 5.4126E-05 81.431 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.863 0.94741 20.582 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.863 0.94928 NaN 1 0 Median 0.69851 0.5954 NaN 1 0 Median 0.77556 0.79907 NaN 1 0 Median 1.1624 0.95592 1.2641 2 0 Median 18633000 9744100 8888400 0 0 0 0 0 0 5168900 2581800 2587100 1201200 730480 470760 7536400 4199400 3337100 4725900 2232400 2493500 37406 884 39310 198062;198063;198064;198065;198066 201387;201388;201389;201390;201391;201392 201388 6 VQYVIQGYHK LIDYVPQVCHLLTNKVQYVIQGYHKRREYI LLTNKVQYVIQGYHKRREYIAAFLSHFGTG K V Q H K R 0 0 0 0 0 2 0 1 1 1 0 1 0 0 0 0 0 0 2 2 0 0 10 0 1233.6506 Q9NXR7 Q9NXR7 261 270 BRE BRCA1-A complex subunit BRE yes yes 3 0.0061001 36.424 By matching By matching By MS/MS 1 1 1 0.97909 1.0926 27.347 3 Median 0.9463 0.90311 NaN 1 0 Median 1.7503 1.5486 NaN 1 0 Median 0.97909 1.0926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4548800 2012500 2536200 1938400 891630 1046800 601350 181610 419740 2009000 939300 1069700 0 0 0 0 0 0 0 0 0 37407 4168 39311 198067;198068;198069 201393;201394 201393 2 VRAEMEVLLASK AATQKRQELEAELAKVRAEMEVLLASKARA LAKVRAEMEVLLASKARAEEESRSTSEKSK K V R S K A 2 1 0 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 2 0 0 12 1 1344.7435 Q15149 Q15149 1897 1908 PLEC Plectin yes yes 2 0.013268 70.942 By MS/MS By MS/MS 1 1 0.99425 0.95613 19.566 2 Median 1.0547 1.098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93728 0.83259 NaN 1 0 Median 16290000 8083000 8207000 13910000 6893400 7016800 0 0 0 0 0 0 0 0 0 0 0 0 2379800 1189600 1190200 37408 2933 39312;39313 198070;198071 201395;201396 201395 1608 2 VRAPMVNPTLGVHEADLLK IQGAKEVLASDLVVKVRAPMVNPTLGVHEA MVNPTLGVHEADLLKTSGTLISFIYPAQNP K V R L K T 2 1 1 1 0 0 1 1 1 0 3 1 1 0 2 0 1 0 0 3 0 0 19 1 2059.1248 Q13423;A0A590UK15;A0A590UJM2;A0A590UK29;D6RAI5;D6RHU2;A0A590UJA4;A0A590UKC7 Q13423 128 146 NNT NAD(P) transhydrogenase, mitochondrial yes no 4 2.7941E-08 76.586 By MS/MS 1 0.49618 0.51533 NaN 1 Median 0.49618 0.51533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11247000 7615900 3631000 11247000 7615900 3631000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37409 2814 39314 198072 201397 201397 1 VRDDVAEYKR ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL VLLPRVRDDVAEYKRLNFHLYMALKKALFK R V R K R L 1 2 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 10 2 1249.6415 Q13895;H7BY94 Q13895 258 267 BYSL Bystin yes no 3 0.00030726 69.979 By matching By matching By MS/MS 1 1 1 1.17 1.3388 29.999 3 Median 0.98044 0.99594 NaN 1 0 Median 1.9716 1.8147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.17 1.3388 NaN 1 0 Median NaN NaN NaN 0 0 Median 4055300 1670400 2385000 943490 446120 497380 1425400 510550 914860 0 0 0 0 0 0 1686400 713690 972730 0 0 0 37410 2845 39315 198073;198074;198075 201398;201399 201399 2 VRDIAIATR DALEGVVLSPSLEARVRDIAIATRNTKKNR PSLEARVRDIAIATRNTKKNRSLYRNILMY R V R T R N 2 2 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 9 1 1013.5982 H0Y2W2;Q5T9A4;Q9NVI7 H0Y2W2 314 322 ATAD3A;ATAD3B ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.0074662 79.974 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.2911 1.3581 25.445 5 Median 1.4887 1.4668 NaN 1 0 Median 1.5898 1.4439 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96418 1.0406 37.661 2 0 Median 1.2911 1.1415 NaN 1 0 Median 17686000 8006700 9679400 4258300 1500200 2758100 7554900 2755100 4799700 0 0 0 0 0 0 4372600 3085800 1286800 1500400 665580 834860 37411 1140;4133;3098 39316 198076;198077;198078;198079;198080 201400;201401;201402;201403;201404 201404 5 VRDKLNNLVLFDK KSGGKAKKKKWSKGKVRDKLNNLVLFDKAT GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K V R D K A 0 1 2 2 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 13 2 1572.8988 P62851 P62851 40 52 RPS25 40S ribosomal protein S25 yes yes 2;3 6.0897E-06 151.1 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 3 2 1.2079 1.22 12.281 8 Median 1.1935 1.2546 8.2674 2 0 Median 1.2058 1.2338 NaN 1 0 Median 1.1701 1.3205 20.419 3 0 Median 1.3863 1.1435 7.5712 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 127980000 55684000 72300000 99465000 43442000 56023000 2276100 1020000 1256100 23446000 10054000 13392000 2797000 1168000 1629000 0 0 0 0 0 0 37412 2600 39317 198081;198082;198083;198084;198085;198086;198087;198088 201405;201406;201407;201408;201409;201410;201411;201412;201413;201414;201415 201405 11 VRDTYLDTQVVGQTGVIR EQNSSDWVTTDIQVKVRDTYLDTQVVGQTG TYLDTQVVGQTGVIRSVTGGMCSVYLKDSE K V R I R S 0 2 0 2 0 2 0 2 0 1 1 0 0 0 0 0 3 0 1 4 0 0 18 1 2019.0749 O00267 O00267 988 1005 SUPT5H Transcription elongation factor SPT5 yes yes 2;3 4.9184E-16 155.98 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0478 0.94113 14.643 7 Median 0.9526 1.0467 15.038 2 0 Median 1.1794 1.0416 16.165 2 0 Median 0.7466 0.90802 4.0167 2 0 Median NaN NaN NaN 0 0 Median 1.1741 1.2757 NaN 1 0 Median NaN NaN NaN 0 0 Median 66201000 35151000 31051000 10041000 4826700 5214100 6827200 2847700 3979500 47047000 26406000 20641000 0 0 0 2286000 1070600 1215400 0 0 0 37413 1452 39318 198089;198090;198091;198092;198093;198094;198095 201416;201417;201418;201419;201420;201421;201422 201417 7 VRDVLDFYNVPIQDR LGHVVPNSRLHQMCRVRDVLDFYNVPIQDR VRDVLDFYNVPIQDRSKFDELSASNLPPNL R V R D R S 0 2 1 3 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 3 0 0 15 1 1847.953 Q8N5N7 Q8N5N7 123 137 MRPL50 39S ribosomal protein L50, mitochondrial yes yes 3 0.00010706 53.777 By matching By MS/MS 1 1 0.70946 0.75693 17.848 2 Median 0.63652 0.66719 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79076 0.85875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12981000 7728700 5252200 2293400 1374000 919360 0 0 0 10688000 6354700 4332900 0 0 0 0 0 0 0 0 0 37414 3384 39319 198096;198097 201423;201424 201424 2 VREEEIEVDSR KRKKGEKRASSPFRRVREEEIEVDSRVADN PFRRVREEEIEVDSRVADNSFDAKRGAAGD R V R S R V 0 2 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 11 1 1359.663 A0A0A0MRM9;Q14978 A0A0A0MRM9 637 647 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes no 2;3 7.5547E-22 204.17 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 8 4 10 0.91109 0.9285 70.55 29 Median 1.6658 1.8507 NaN 1 1 Median 0.94885 0.90271 28.215 2 0 Median 0.9256 1.0433 110.09 6 1 Median 0.96773 0.90133 51.626 8 3 Median 1.0714 1.1641 29.892 4 1 Linear 0.62642 0.55447 70.354 8 3 Median 251940000 143660000 108280000 1139500 449060 690400 1381000 902730 478280 82985000 49270000 33715000 24373000 15411000 8961900 92615000 44801000 47815000 49443000 32823000 16620000 37415 165 39320 198098;198099;198100;198101;198102;198103;198104;198105;198106;198107;198108;198109;198110;198111;198112;198113;198114;198115;198116;198117;198118;198119;198120;198121;198122;198123;198124;198125;198126;198127;198128 201425;201426;201427;201428;201429;201430;201431;201432;201433;201434;201435;201436;201437;201438;201439;201440;201441;201442;201443;201444;201445;201446;201447;201448;201449;201450;201451;201452;201453;201454;201455;201456;201457 201435 33 VREEFKELK SVAKERARLQLELSKVREEFKELKARNTKK QLELSKVREEFKELKARNTKKEGDLIAAQA K V R L K A 0 1 0 0 0 0 3 0 0 0 1 2 0 1 0 0 0 0 0 1 0 0 9 2 1176.6503 P02545;Q3BDU5 P02545 109 117 LMNA Prelamin-A/C;Lamin-A/C no no 2;3 0.0023509 108.74 By MS/MS By MS/MS 5 1 0.74979 0.88358 37.71 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85141 0.98853 15.873 2 0 Median 0.56886 0.52989 NaN 1 0 Median 69406000 14860000 54545000 0 0 0 0 0 0 0 0 0 0 0 0 65144000 13090000 52054000 4261500 1770200 2491300 37416 1834;3010 39321 198129;198130;198131;198132;198133;198134 201458;201459;201460;201461;201462;201463 201459 6 VREEGDEEGEGDEAEDEEQRGPELK KMQNAAKASRKKLKRVREEGDEEGEGDEAE GDEAEDEEQRGPELKQASRRDMYTICQSAG R V R L K Q 1 2 0 3 0 1 10 4 0 0 1 1 0 0 1 0 0 0 0 1 0 0 25 2 2830.2013 Q7KZ85 Q7KZ85 492 516 SUPT6H Transcription elongation factor SPT6 yes yes 4 0.0081355 20.496 By MS/MS 1 0.65926 0.74795 NaN 1 Median NaN NaN NaN 0 0 Median 0.65926 0.74795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2081800 992070 1089700 0 0 0 2081800 992070 1089700 0 0 0 0 0 0 0 0 0 0 0 0 37417 3213 39322 198135 201464 201464 1 VREEIAEYQLR SLDCMHKDQVEKEGKVREEIAEYQLRLHEA KEGKVREEIAEYQLRLHEAEKKHQALLLDT K V R L R L 1 2 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 11 1 1404.7361 P49454;A0A087WTY4 P49454 2692 2702 CENPF Centromere protein F yes no 2 0.030357 61.353 By MS/MS 1 1.6684 1.8336 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6684 1.8336 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17085000 5714000 11371000 0 0 0 0 0 0 17085000 5714000 11371000 0 0 0 0 0 0 0 0 0 37418 2383 39323 198136 201465 201465 1 VREEILAK RASKEGMEAAVEKQRVREEILAKGGFLPPE AAVEKQRVREEILAKGGFLPPEEIKERFDS R V R A K G 1 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 956.56548 Q9H0D6 Q9H0D6 135 142 XRN2 5-3 exoribonuclease 2 yes yes 2 0.070229 50.607 By matching By MS/MS By matching By matching By matching By matching 1 1 1 2 1 1 1.2181 1.1432 26.969 7 Median 1.0409 1.0755 NaN 1 0 Median 1.2181 1.1432 NaN 1 0 Median 0.90323 1.0308 NaN 1 0 Median 1.2535 1.2122 26.456 2 0 Median 2.0506 2.155 NaN 1 0 Median 1.3892 1.2299 NaN 1 0 Median 8201600 3538900 4662700 587550 282790 304760 4661100 2048200 2612900 978800 477870 500930 837590 340530 497060 902800 318280 584520 233780 71302 162480 37419 3924 39324 198137;198138;198139;198140;198141;198142;198143 201466 201466 1 VREELIDK QDKDTLSIHYLMLPRVREELIDKKTESAVS HYLMLPRVREELIDKKTESAVSQMQSVIEL R V R D K K 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 1000.5553 P41252;A0A0A0MSX9;J3KR24 P41252 809 816 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.020033 82.75 By MS/MS 1 1.1992 1.1167 NaN 1 Median NaN NaN NaN 0 0 Median 1.1992 1.1167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8910000 3948300 4961700 0 0 0 8910000 3948300 4961700 0 0 0 0 0 0 0 0 0 0 0 0 37420 2302 39325 198144 201467;201468 201468 2 VREELIDKK QDKDTLSIHYLMLPRVREELIDKKTESAVS YLMLPRVREELIDKKTESAVSQMQSVIELG R V R K K T 0 1 0 1 0 0 2 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 9 2 1128.6503 P41252;A0A0A0MSX9;J3KR24 P41252 809 817 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.038997 48.283 By matching By MS/MS 2 1 1.1037 1.0982 6.5307 3 Median 1.0581 1.1608 7.8418 2 0 Median 1.1037 1.0934 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3468900 1489900 1978900 574350 283620 290730 2894500 1206300 1688200 0 0 0 0 0 0 0 0 0 0 0 0 37421 2302 39326 198145;198146;198147 201469;201470 201470 2 VREEVPLELVEAHVK VASAAAKAALEEFSRVREEVPLELVEAHVK VREEVPLELVEAHVKKVQEAARASGKVDPT R V R V K K 1 1 0 0 0 0 4 0 1 0 2 1 0 0 1 0 0 0 0 4 0 0 15 1 1745.9676 Q92922 Q92922 725 739 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3;4 0.00011456 58.671 By MS/MS By MS/MS By matching By matching 4 3 2 1 0.83275 0.93481 63.253 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79436 0.90084 3.8059 4 0 Median 1.1509 1.106 22.668 3 1 Median 2.3631 2.5165 139.35 2 0 Median 1.4062 1.1715 NaN 1 0 Median 78654000 37647000 41007000 0 0 0 0 0 0 55632000 29938000 25694000 10144000 5289300 4855000 12041000 2070100 9970900 836880 350190 486680 37422 3567 39327 198148;198149;198150;198151;198152;198153;198154;198155;198156;198157 201471;201472;201473;201474;201475 201472 5 VREEVPLELVEAHVKK VASAAAKAALEEFSRVREEVPLELVEAHVK REEVPLELVEAHVKKVQEAARASGKVDPTY R V R K K V 1 1 0 0 0 0 4 0 1 0 2 2 0 0 1 0 0 0 0 4 0 0 16 2 1874.0625 Q92922 Q92922 725 740 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 4 3.9682E-05 50.827 By MS/MS 1 0.88003 1.0028 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88003 1.0028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20892000 10541000 10352000 0 0 0 0 0 0 20892000 10541000 10352000 0 0 0 0 0 0 0 0 0 37423 3567 39328 198158 201476;201477 201477 2 VREIIINAVR CLMFKHLVHKPSEERVREIIINAVRIEQEF PSEERVREIIINAVRIEQEFLTEALPVKLI R V R V R I 1 2 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 10 1 1181.7244 P31350;A0A286YFD6;C9JXC1 P31350 289 298 RRM2 Ribonucleoside-diphosphate reductase subunit M2 yes no 2 0.066189 55.064 By MS/MS 1 1.4113 1.485 NaN 1 Median 1.4113 1.485 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6290200 2711700 3578500 6290200 2711700 3578500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37424 2203 39329 198159 201478 201478 1 VREIIQK HELFKEANMPLPGYKVREIIQKLMLDGDRN NMPLPGYKVREIIQKLMLDGDRNKDGKISF K V R Q K L 0 1 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 7 1 884.54435 P13797;A0A0A0MSQ0;U3KQI3 P13797 53 59 PLS3 Plastin-3 yes no 2 0.064401 76.035 By matching By MS/MS 1 1 1.2117 1.1603 0.99444 2 Median 1.1632 1.1685 NaN 1 0 Median 1.2621 1.1521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13024000 5745600 7278700 5208000 2273600 2934500 7816300 3472000 4344300 0 0 0 0 0 0 0 0 0 0 0 0 37425 1995 39330 198160;198161 201479 201479 1 VRELEDMYLK QVAQKSSELEQYLQRVRELEDMYLKLQEAL QYLQRVRELEDMYLKLQEALEDERQARQDE R V R L K L 0 1 0 1 0 0 2 0 0 0 2 1 1 0 0 0 0 0 1 1 0 0 10 1 1294.6591 Q9UH65;E7EMB1 Q9UH65 419 428 SWAP70 Switch-associated protein 70 yes no 2;3 0.0001107 84.658 By MS/MS By matching By matching 2 1 1 1.199 1.2026 13.118 4 Median 1.199 1.2026 5.0794 2 1 Median 1.6287 1.4915 NaN 1 0 Median 1.0402 1.1059 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29977000 12279000 17698000 24332000 10134000 14198000 3859800 1469500 2390300 1785600 675460 1110100 0 0 0 0 0 0 0 0 0 37426 4270 39331 198162;198163;198164;198165 201480;201481;201482 201480 3 VRELFVQSEIFPLETPAFAIK ILDAGAQYGKVIDRRVRELFVQSEIFPLET QSEIFPLETPAFAIKEQGFRAIIISGGPNS R V R I K E 2 1 0 0 0 1 3 0 0 2 2 1 0 3 2 1 1 0 0 2 0 0 21 1 2433.3308 P49915 P49915 45 65 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 0.069526 7.6218 By MS/MS 2 0.79577 0.80959 6.4605 2 Median 0.79577 0.80959 6.4605 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1211300 741030 470220 1211300 741030 470220 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37427 2405 39332 198166;198167 201483;201484 201483 2 VRELISDNQYR DFLDDEEDQGIYQSKVRELISDNQYRLIVN YQSKVRELISDNQYRLIVNVNDLRRKNEKR K V R Y R L 0 2 1 1 0 1 1 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 11 1 1391.7157 P25205 P25205 36 46 MCM3 DNA replication licensing factor MCM3 yes yes 2;3 2.3293E-05 117.25 By MS/MS By MS/MS 3 3 0.887 1.005 24.625 6 Median 0.83896 0.9321 20.389 3 0 Median NaN NaN NaN 0 0 Median 0.95995 1.1092 19.997 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28143000 14860000 13283000 20037000 10709000 9327800 0 0 0 8106700 4151000 3955700 0 0 0 0 0 0 0 0 0 37428 2129 39333 198168;198169;198170;198171;198172;198173 201485;201486;201487;201488;201489;201490 201489 6 VRELLEQISAFDNVPR QKISELIKRPNVSPKVRELLEQISAFDNVP RELLEQISAFDNVPRKKAKFQNWMKNSLKV K V R P R K 1 2 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 2 0 0 16 1 1885.0058 Q9NX58 Q9NX58 94 109 LYAR Cell growth-regulating nucleolar protein yes yes 3 9.884E-07 76.85 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.93527 0.9551 8.7894 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92013 0.99624 7.2641 2 2 Median 1.0239 0.9551 NaN 1 0 Median 0.92308 0.99135 NaN 1 0 Median 0.93527 0.82688 NaN 1 0 Median 17103000 8485100 8617900 0 0 0 0 0 0 11256000 5641500 5614700 859850 422260 437590 4220400 2052200 2168200 766620 369180 397450 37429 4160 39334 198174;198175;198176;198177;198178 201491;201492;201493;201494 201492 4 VREMEEEAEK DGAIEDPELEAIKARVREMEEEAEKLKELQ AIKARVREMEEEAEKLKELQNEVEKQMNMS R V R E K L 1 1 0 0 0 0 5 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 10 1 1248.5656 Q86U42 Q86U42 126 135 PABPN1 Polyadenylate-binding protein 2 yes yes 3 0.010695 33.088 By matching By matching By matching By MS/MS By matching 1 1 1 1 2 0.86992 0.88184 14.399 6 Median 0.90951 0.96626 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83205 0.94832 NaN 1 0 Median 1.0331 0.91413 NaN 1 0 Median 0.77561 0.8046 NaN 1 0 Median 0.8114 0.74716 18.352 2 0 Median 2541300 1233300 1307900 52745 26130 26614 0 0 0 159340 83532 75808 290570 127150 163430 1470400 713790 756620 568200 282740 285460 37430 3270 39335 198179;198180;198181;198182;198183;198184 201495;201496 201495 2 VREMEEEAEKLK DGAIEDPELEAIKARVREMEEEAEKLKELQ KARVREMEEEAEKLKELQNEVEKQMNMSPP R V R L K E 1 1 0 0 0 0 5 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 12 2 1489.7446 Q86U42 Q86U42 126 137 PABPN1 Polyadenylate-binding protein 2 yes yes 3 0.0031476 71.558 By MS/MS By MS/MS By MS/MS 1 2 2 0.96924 1.0949 6.4956 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96924 1.0866 NaN 1 0 Median 1.22 1.2204 NaN 1 1 Median 0.95714 1.0949 NaN 1 1 Median NaN NaN NaN 0 0 Median 15753000 8233000 7520100 0 0 0 0 0 0 7027300 3397600 3629700 2473800 1152700 1321000 6252000 3682600 2569400 0 0 0 37431 3270 39336 198185;198186;198187;198188;198189 201497;201498;201499;201500;201501 201501 5 VREWYGYHFPELVK LLDQLDKDINTFSMRVREWYGYHFPELVKI RVREWYGYHFPELVKIINDNATYCRLAQFI R V R V K I 0 1 0 0 0 0 2 1 1 0 1 1 0 1 1 0 0 1 2 2 0 0 14 1 1821.9202 O00567;A0A494C128 O00567 189 202 NOP56 Nucleolar protein 56 yes no 4 0.036129 24.191 By MS/MS By MS/MS 2 3 1.0278 1.0904 15.395 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1097 1.1774 10.856 2 2 Median NaN NaN NaN 0 0 Median 1.0655 1.1045 15.365 3 0 Plateau NaN NaN NaN 0 0 Median 16026000 8026700 7999200 0 0 0 0 0 0 8982900 4789700 4193100 0 0 0 7043000 3236900 3806000 0 0 0 37432 1472 39337 198190;198191;198192;198193;198194 201502;201503;201504;201505 201505 4 VREYELR VRGAKAEEILEKGLKVREYELRKNNFSDTG EILEKGLKVREYELRKNNFSDTGNFGFGIQ K V R L R K 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 963.51378 P62913;Q5VVC8 P62913 89 95 RPL11 60S ribosomal protein L11 yes no 2 0.013057 119.17 By MS/MS By matching By MS/MS By matching By matching 2 2 1 1 1 1.2472 1.1924 9.2058 7 Median 1.2184 1.2896 2.2129 2 0 Median 1.3238 1.1669 3.0577 2 0 Median 1.3262 1.375 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0493 1.138 NaN 1 0 Median 1.2472 1.0558 NaN 1 0 Median 30133000 12873000 17260000 12452000 5068900 7383600 9588600 4265900 5322600 6515000 2858000 3657000 0 0 0 1264500 554890 709590 312440 125320 187120 37433 2609 39338 198195;198196;198197;198198;198199;198200;198201 201506;201507 201506 2 VRIDEYDYSKPIQGQQK ARKESRGAHAREDYKVRIDEYDYSKPIQGQ IDEYDYSKPIQGQQKKPFEEHWRKHTLSYV K V R Q K K 0 1 0 2 0 3 1 1 0 2 0 2 0 0 1 1 0 0 2 1 0 0 17 2 2066.0433 P31040;D6RFM5;A0A087X1I3 P31040 599 615 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3;4 1.2039E-10 91.657 By MS/MS 2 0.65844 0.7128 25.084 2 Median 0.65844 0.7128 25.084 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28585000 16844000 11741000 28585000 16844000 11741000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37434 2200 39339 198202;198203 201508;201509 201509 2 VRIEGDNENKLPR GKVIQEIVDKSGVVRVRIEGDNENKLPRED VRVRIEGDNENKLPREDGMVPFVFVGTKES R V R P R E 0 2 2 1 0 0 2 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 13 2 1538.8165 B4DXZ6;P51114;E7EU85;E9PFF5 B4DXZ6 303 315 FXR1 Fragile X mental retardation syndrome-related protein 1 yes no 3 0.040436 33.685 By MS/MS 1 0.84137 0.84937 NaN 1 Median 0.84137 0.84937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1791600 1108100 683500 1791600 1108100 683500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37435 608 39340 198204 201510 201510 0 VRLTLPHSIR FLMVVLWKIPSKELRVRLTLPHSIRSDSED SKELRVRLTLPHSIRSDSEDICLFTKDEPN R V R I R S 0 2 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 1 0 0 10 1 1190.7248 O76021;J3QSV6;I3L3C4;I3L3U9;I3L234 O76021 80 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes no 3 0.00062609 73.885 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2239000 0 2239000 0 0 0 0 0 0 0 0 0 0 0 0 2239000 0 2239000 0 0 0 37436 1716 39341 198205 201511 201511 1 VRMNVLADALK ______________________________ ______________________________ M V R L K S 2 1 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 11 1 1228.6962 I3L3P7;P62244;I3L246;H3BV27;H3BT37;I3L303 I3L3P7 2 12 RPS15A 40S ribosomal protein S15a yes no 2;3 0.00028481 98.943 By MS/MS By MS/MS By matching By MS/MS 8 5 3 5 1.1803 1.1023 22.307 21 Median 1.1165 1.097 15.379 8 0 Median 1.2326 1.0874 3.7337 5 0 Median 1.2651 1.3027 13.063 3 0 Plateau NaN NaN NaN 0 0 Median 1.2346 1.4053 39.053 5 0 Median NaN NaN NaN 0 0 Median 282660000 127630000 155030000 92847000 42206000 50642000 143050000 63390000 79665000 12249000 6360700 5887800 0 0 0 34506000 15676000 18831000 0 0 0 37437 1289 39342;39343 198206;198207;198208;198209;198210;198211;198212;198213;198214;198215;198216;198217;198218;198219;198220;198221;198222;198223;198224;198225;198226 201512;201513;201514;201515;201516;201517;201518;201519;201520;201521;201522;201523;201524;201525 201522 426 14 VRNHYNEEMSNLR EEGTRKREYENELAKVRNHYNEEMSNLRNK AKVRNHYNEEMSNLRNKYETEINITKTTIK K V R L R N 0 2 3 0 0 0 2 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 13 1 1660.774 P15924 P15924 1195 1207 DSP Desmoplakin yes yes 3 0.0057081 32.068 By MS/MS 2 0.79328 0.85517 25.457 2 Median 0.79328 0.85517 25.457 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1536300 787090 749160 1536300 787090 749160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37438 2021 39344 198227;198228 201526;201527 201526 2 VRPAELEQFESTIGFK KILKISYKRSNFYIKVRPAELEQFESTIGF RPAELEQFESTIGFKLPNHRAAKRLWKVCV K V R F K L 1 1 0 0 0 1 3 1 0 1 1 1 0 2 1 1 1 0 0 1 0 0 16 1 1849.9574 O43491;E9PHY5;E9PK52;E9PII3;A0A2R8Y5B3 O43491 459 474 EPB41L2 Band 4.1-like protein 2 yes no 2;3 4.589E-09 116.54 By MS/MS By MS/MS By matching By matching By matching 2 2 1 1 1 0.81549 0.8441 58.678 7 Median 0.43255 0.4518 114 2 1 Median NaN NaN NaN 0 0 Median 0.91642 1.038 16.49 2 0 Median 0.75657 0.72707 NaN 1 0 Median 0.75932 0.8441 NaN 1 0 Median 0.90439 0.80617 NaN 1 0 Median 21138000 12284000 8854000 9352400 5965500 3386900 0 0 0 10664000 5636900 5026600 92630 42854 49776 931450 586300 345150 97765 52262 45503 37439 1573 39345 198229;198230;198231;198232;198233;198234;198235 201528;201529;201530;201531 201530 4 VRPASSAASVYAGAGGSGSR TNYRSLGSVRTPSQRVRPASSAASVYAGAG SAASVYAGAGGSGSRISVSRSVWGGSVGSA R V R S R I 5 2 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 20 1 1806.8973 CON__P05784 CON__P05784 27 46 yes yes 3 9.1335E-09 67.227 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 1.6153 1.425 84.509 6 Median 1.7843 1.8774 NaN 1 1 Median 1.8026 1.6834 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.52605 0.5157 136.77 2 0 Median NaN NaN NaN 0 0 Median 1.4629 1.29 21.04 2 1 Median 22485000 10056000 12428000 5346500 1797200 3549300 5204400 1972300 3232100 0 0 0 6906300 4656200 2250100 0 0 0 5027400 1630600 3396800 + 37440 749 39346 198236;198237;198238;198239;198240;198241 201532;201533;201534;201535;201536;201537;201538 201537 7 VRPASTGGLSLLPPPPGGK IANMKKKEGAAGNPRVRPASTGGLSLLPPP STGGLSLLPPPPGGKTSTLIPPPGEQLAVG R V R G K T 1 1 0 0 0 0 0 4 0 0 3 1 0 0 5 2 1 0 0 1 0 0 19 1 1800.0258 Q9NVZ3;D6RB24 Q9NVZ3 177 195 NECAP2 Adaptin ear-binding coat-associated protein 2 yes no 3 2.0751E-05 46.663 By matching By MS/MS By matching 1 1 1 0.4524 0.49254 11.755 3 Median 0.41192 0.41492 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4524 0.49254 NaN 1 0 Median 0.55061 0.51962 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22100000 14799000 7301100 16734000 11050000 5684400 0 0 0 4244600 3029600 1215000 1120900 719230 401650 0 0 0 0 0 0 37441 4143 39347 198242;198243;198244 201539 201539 1 VRPAYSLEPR PRDLERERDYPFYERVRPAYSLEPRVGAGA PFYERVRPAYSLEPRVGAGAGAAPFREVDE R V R P R V 1 2 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 10 1 1186.6459 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 295 304 RBM15 Putative RNA-binding protein 15 yes no 2 0.035537 47.706 By MS/MS 1 0.52827 0.61041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52827 0.61041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3924600 2559400 1365200 0 0 0 0 0 0 3924600 2559400 1365200 0 0 0 0 0 0 0 0 0 37442 60 39348 198245 201540 201540 1 VRPCVVYGGADIGQQIR VQIYEEARKFSYRSRVRPCVVYGGADIGQQ PCVVYGGADIGQQIRDLERGCHLLVATPGR R V R I R D 1 2 0 1 1 2 0 3 0 2 0 0 0 0 1 0 0 0 1 3 0 0 17 1 1886.9785 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523 A0A2U3TZJ9 294 310 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 1.7784E-12 97.579 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 5 2 0.88452 0.90778 31.45 12 Median 0.75863 0.74743 NaN 1 0 Median 0.849 0.77107 10.025 2 0 Median 0.8785 0.98034 13.995 2 0 Median NaN NaN NaN 0 0 Median 1.0733 1.1662 11.124 5 2 Median 0.58518 0.52315 30.233 2 0 Median 97082000 45675000 51407000 7824700 4062800 3761900 3644100 1975700 1668400 15528000 7426900 8100900 0 0 0 66437000 30148000 36289000 3648400 2061400 1587000 37443 263 39349 198246;198247;198248;198249;198250;198251;198252;198253;198254;198255;198256;198257 201541;201542;201543;201544;201545;201546;201547;201548;201549 201549 9 VRPDYTAQNLDHGK WLWQHDEPCYWRLTRVRPDYTAQNLDHGKA RVRPDYTAQNLDHGKAWGILTFKDASFSSS R V R G K A 1 1 1 2 0 1 0 1 1 0 1 1 0 0 1 0 1 0 1 1 0 0 14 1 1612.7958 C9JJ19;P82930 C9JJ19 100 113 MRPS34 28S ribosomal protein S34, mitochondrial yes no 3;4 0.00017946 67.102 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 2 1.0901 1.1197 30.289 7 Median 0.77614 0.81582 37.844 2 0 Median 1.3365 1.2467 NaN 1 0 Median 1.0905 1.1197 NaN 1 1 Median 1.7879 1.5826 NaN 1 0 Median 0.91378 0.95832 24.788 2 0 Median NaN NaN NaN 0 0 Median 12544000 6257000 6286600 6495200 3581000 2914200 2477100 1113500 1363600 1836900 798860 1038000 427220 145060 282160 1307200 618500 688660 0 0 0 37444 702 39350 198258;198259;198260;198261;198262;198263;198264 201550;201551;201552;201553;201554;201555 201555 6 VRPLLPSELER VPSEDSMEKVKVYLRVRPLLPSELERQEDQ VYLRVRPLLPSELERQEDQGCVRIENVETL R V R E R Q 0 2 0 0 0 0 2 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 11 1 1307.7561 O95235;D6R9E4;D6RBN1 O95235 71 81 KIF20A Kinesin-like protein KIF20A;Kinesin-like protein yes no 3 0.00072297 54.471 By MS/MS 1 0.98436 1.1374 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98436 1.1374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2213200 862730 1350500 0 0 0 0 0 0 2213200 862730 1350500 0 0 0 0 0 0 0 0 0 37445 1756 39351 198265 201556 201556 1 VRPPPLKK TPERKEAAGTGKKVKVRPPPLKKTFDSVDK GTGKKVKVRPPPLKKTFDSVDKVLSEVDFE K V R K K T 0 1 0 0 0 0 0 0 0 0 1 2 0 0 3 0 0 0 0 1 0 0 8 2 933.61237 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 2240 2247 CIC Protein capicua homolog yes no 1 0.079424 0 By MS/MS 1 5.3403 5.4643 NaN 1 Median NaN NaN NaN 0 0 Median 5.3403 5.4643 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1456700 160810 1295900 0 0 0 1456700 160810 1295900 0 0 0 0 0 0 0 0 0 0 0 0 37446 1283 39352 198266 201557 201557 1 VRPVPSLVPRPPQTSLVK DLQQKLEEVRQPPPRVRPVPSLVPRPPQTS VPSLVPRPPQTSLVKFVGNIYTLKCRFCEV R V R V K F 0 2 0 0 0 1 0 0 0 0 2 1 0 0 5 2 1 0 0 4 0 0 18 2 1969.1837 B9EGQ5;M0QXA7;A0A2R8YFV2;O95785 B9EGQ5 752 769 WIZ Protein Wiz yes no 3 0.0024283 49.463 By MS/MS By MS/MS 1 1 0.33125 0.38041 15.178 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.37567 0.4235 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.29209 0.34169 NaN 1 1 Median NaN NaN NaN 0 0 Median 24570000 18175000 6394600 0 0 0 0 0 0 17138000 12528000 4609600 0 0 0 7432000 5647000 1785000 0 0 0 37447 656 39353 198267;198268 201558;201559 201558 2 VRPYQVELVR DVRTREVGIQEIHHKVRPYQVELVRRDYVA EIHHKVRPYQVELVRRDYVANGGWETFLSY K V R V R R 0 2 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 10 1 1257.7194 Q9H9T3;B4DKA4;H0YC54;H0YAP7 Q9H9T3 415 424 ELP3 Elongator complex protein 3 yes no 3 0.0038114 42.001 By MS/MS 1 1.0723 1.0564 NaN 1 Median 1.0723 1.0564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3580400 1895800 1684600 3580400 1895800 1684600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37448 4002 39354 198269 201560 201560 1 VRQDLASLPAELINQIGNR ALPEQVAPESRNRIRVRQDLASLPAELINQ LASLPAELINQIGNRCHPKLYDEGDPSEKL R V R N R C 2 2 2 1 0 2 1 1 0 2 3 0 0 0 1 1 0 0 0 1 0 0 19 1 2106.1546 Q96RE7 Q96RE7 336 354 NACC1 Nucleus accumbens-associated protein 1 yes yes 3 1.8209E-05 47.204 By MS/MS By matching 3 1 0.60961 0.68027 31.002 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60961 0.68027 31.002 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2773100 1570500 1202500 0 0 0 0 0 0 2710200 1540900 1169300 0 0 0 0 0 0 62833 29654 33179 37449 3725 39355 198270;198271;198272;198273 201561;201562 201562 2 VRQQAADLISR ICGTVLWRLNNKSAKVRQQAADLISRTAVV KSAKVRQQAADLISRTAVVMKTCQEEKLMG K V R S R T 2 2 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 1 1255.6997 O75533 O75533 947 957 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 4.3411E-05 116.55 By MS/MS By MS/MS By MS/MS 2 4 4 0.99313 1.0177 13.094 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94206 1.1457 7.0948 2 0 Median NaN NaN NaN 0 0 Median 0.95285 1.0353 8.0048 4 0 Median 1.0796 0.96164 13.972 4 0 Median 42120000 21223000 20897000 0 0 0 0 0 0 4697600 2333600 2364000 0 0 0 31604000 16111000 15493000 5818700 2777800 3040900 37450 1683 39356 198274;198275;198276;198277;198278;198279;198280;198281;198282;198283 201563;201564;201565;201566;201567;201568;201569;201570;201571;201572;201573;201574;201575;201576;201577 201567 15 VRTELADKVTK AQLQELQVKFNEGERVRTELADKVTKLQVE EGERVRTELADKVTKLQVELDNVTGLLSQS R V R T K L 1 1 0 1 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 2 0 0 11 2 1258.7245 P35579 P35579 1267 1277 MYH9 Myosin-9 yes yes 3 0.0008257 53.034 By MS/MS By matching By MS/MS By MS/MS By MS/MS 2 1 1 1 2 1.0397 1.217 31.279 7 Median 1.3921 1.4931 17.366 2 0 Median 0.85024 0.96882 NaN 1 0 Median 0.92118 1.217 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1436 1.3444 NaN 1 0 Median 0.804 0.79784 31.654 2 0 Median 21124000 9537100 11587000 7267400 3104100 4163300 446280 184600 261680 1719500 813220 906270 0 0 0 6075000 2929400 3145600 5615800 2505800 3110000 37451 2244 39357 198284;198285;198286;198287;198288;198289;198290 201578;201579;201580;201581;201582;201583;201584 201579 7 VRTEPGIGPEGNMSTGAPQPNLMPSNPDSGMYSPSR MGPRQHYPYGGPYDRVRTEPGIGPEGNMST LMPSNPDSGMYSPSRYPPQQQQQQQQRHDS R V R S R Y 1 2 3 1 0 1 2 5 0 1 1 0 3 0 7 5 2 0 1 1 0 0 36 1 3727.7029 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6;H0YCU6 O14497 1288 1323 ARID1A AT-rich interactive domain-containing protein 1A yes no 3 2.2373E-06 46.898 By MS/MS 1 0.45983 0.58087 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45983 0.58087 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2375500 1923300 452170 0 0 0 0 0 0 2375500 1923300 452170 0 0 0 0 0 0 0 0 0 37452 1480 39358 198291 201585 201585 1 VRVEALQSGGGQER GPKGVGAIYIRRRPRVRVEALQSGGGQERG RVRVEALQSGGGQERGMRSGTVPTPLVVGL R V R E R G 1 2 0 0 0 2 2 3 0 0 1 0 0 0 0 1 0 0 0 2 0 0 14 1 1484.7696 Q9Y697 Q9Y697 276 289 NFS1 Cysteine desulfurase, mitochondrial yes yes 3 0.0068891 42.242 By MS/MS 1 1.3832 1.2902 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3832 1.2902 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2185100 852530 1332600 0 0 0 0 0 0 0 0 0 2185100 852530 1332600 0 0 0 0 0 0 37453 4484 39359 198292 201586 201586 1 VRVELSNGEK DAVRELDGRTLCGCRVRVELSNGEKRSRNR LCGCRVRVELSNGEKRSRNRGPPPSWGRRP R V R E K R 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1129.6091 P84103 P84103 76 85 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.0096871 61.65 By MS/MS By MS/MS By matching By MS/MS By matching 2 1 1 2 1 1.0524 1.0339 8.545 7 Median NaN NaN NaN 0 0 Median 1.1697 1.0647 4.1446 2 0 Median 1.0544 1.1037 NaN 1 0 Median 1.0162 0.89951 NaN 1 0 Median 0.93143 1.0144 9.9249 2 0 Median 1.0524 0.93855 NaN 1 0 Median 22136000 10787000 11349000 0 0 0 1816100 917660 898400 13181000 6310400 6870600 878150 406690 471470 4979300 2580600 2398700 1281600 571210 710350 37454 2668 39360 198293;198294;198295;198296;198297;198298;198299 201587;201588;201589 201587 3 VRVELSNGEKR DAVRELDGRTLCGCRVRVELSNGEKRSRNR CGCRVRVELSNGEKRSRNRGPPPSWGRRPR R V R K R S 0 2 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 2 1285.7102 P84103 P84103 76 86 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 3 5.0008E-05 89.403 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.1131 1.1389 8.6703 8 Median 1.1131 1.2007 8.6313 2 0 Median 1.2039 1.2189 18.921 2 0 Median 1.0412 1.1948 NaN 1 0 Median 1.3198 1.1443 NaN 1 0 Median 0.98867 1.1205 1.6346 2 0 Median NaN NaN NaN 0 0 Median 14410000 6852400 7557300 920950 400010 520940 1132400 515740 616620 3194800 1531300 1663500 617810 266670 351140 8543800 4138700 4405100 0 0 0 37455 2668 39361 198300;198301;198302;198303;198304;198305;198306;198307 201590;201591;201592;201593;201594;201595;201596;201597;201598 201594 9 VRVELSTGMPR DAVRGLDGKVICGSRVRVELSTGMPRRSRF CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V R P R R 0 2 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 2 0 0 11 1 1243.6707 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 77 87 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2;3 3.6893E-05 119.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 5 5 18 15 1.0533 1.0377 22.164 48 Median 1.0933 1.177 63.837 3 0 Median 1.293 1.3655 18.803 4 1 Linear 0.89981 0.93918 8.2405 5 0 Median 1.1177 1.043 13.262 5 0 Median 0.92829 0.99082 10.914 17 1 Median 1.2052 1.0388 14.671 14 0 Median 653310000 341150000 312160000 32655000 15745000 16910000 26673000 12960000 13713000 42710000 23515000 19195000 29164000 13541000 15623000 459300000 246320000 212980000 62808000 29063000 33744000 37456 214 39362;39363 198308;198309;198310;198311;198312;198313;198314;198315;198316;198317;198318;198319;198320;198321;198322;198323;198324;198325;198326;198327;198328;198329;198330;198331;198332;198333;198334;198335;198336;198337;198338;198339;198340;198341;198342;198343;198344;198345;198346;198347;198348;198349;198350;198351;198352;198353;198354;198355;198356;198357 201599;201600;201601;201602;201603;201604;201605;201606;201607;201608;201609;201610;201611;201612;201613;201614;201615;201616;201617;201618;201619;201620;201621;201622;201623;201624;201625;201626;201627;201628;201629;201630;201631;201632;201633;201634;201635;201636;201637;201638 201616 85 40 VSADNTVGR LSTVLQYAEDVLSGKVSADNTVGRFLMSLV DVLSGKVSADNTVGRFLMSLVNQVPKIVPD K V S G R F 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 9 0 917.45666 O00303;H0YDT6 O00303 298 306 EIF3F Eukaryotic translation initiation factor 3 subunit F yes no 2 0.024906 37.727 By matching By MS/MS By matching 1 2 1 1.1531 1.0653 7.8282 4 Median 1.1431 1.1139 NaN 1 0 Median 1.2529 1.1007 11.546 2 0 Median 1.0623 1.0188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2087000 914460 1172500 316080 142150 173920 1480600 648850 831790 290240 123450 166780 0 0 0 0 0 0 0 0 0 37457 1457 39364 198358;198359;198360;198361 201639;201640;201641 201641 3 VSAEAVTTTLHQVTR HQLSQVLHRLSLLERVSAEAVTTTLHQVTR VSAEAVTTTLHQVTRERMEDRCRGEYERSF R V S T R E 2 1 0 0 0 1 1 0 1 0 1 0 0 0 0 1 4 0 0 3 0 0 15 0 1611.858 Q9UJX6 Q9UJX6 256 270 ANAPC2 Anaphase-promoting complex subunit 2 yes yes 2;3 7.8046E-08 127.37 By MS/MS By MS/MS 1 3 1.1314 0.97493 14.439 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8065 0.85846 NaN 1 0 Median 1.1627 1.0019 12.792 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15751000 7781500 7969000 0 0 0 0 0 0 7002200 3706500 3295700 8748300 4075000 4673300 0 0 0 0 0 0 37458 4303 39365 198362;198363;198364;198365 201642;201643;201644;201645 201643 4 VSAENLQK LKFPDELAHVEKASRVSAENLQKNLDQMKK HVEKASRVSAENLQKNLDQMKKQISDVERD R V S Q K N 1 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 8 0 887.47125 A0A0G2JH68;O60610;A0A140T8Z0;A0A2R8Y5N1;H9KV28 A0A0G2JH68 1050 1057 DIAPH1 Protein diaphanous homolog 1 yes no 2 0.012155 55.531 By MS/MS 1 1.0807 0.94746 NaN 1 Median NaN NaN NaN 0 0 Median 1.0807 0.94746 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2349100 982870 1366300 0 0 0 2349100 982870 1366300 0 0 0 0 0 0 0 0 0 0 0 0 37459 274 39366 198366 201646 201646 1 VSAIVEQSWR AAQLYQENKREYEKRVSAIVEQSWRDC___ EYEKRVSAIVEQSWRDC_____________ R V S W R D 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 1 0 2 0 0 10 0 1173.6142 A0A0D9SG71;A0A0R4J2E5;P49459 A0A0D9SG71 108 117 UBE2A Ubiquitin-conjugating enzyme E2 A yes no 2 4.1385E-18 161.79 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.2427 1.1506 22.982 4 Median 1.4631 1.4177 NaN 1 1 Median 1.2045 1.0211 NaN 1 0 Median 1.2821 1.2965 NaN 1 0 Median 1.0848 0.8548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40669000 17763000 22906000 12678000 5151500 7526600 4196400 1990800 2205600 22129000 9849300 12280000 1664800 770830 893960 0 0 0 0 0 0 37460 270 39367 198367;198368;198369;198370 201647;201648;201649;201650;201651;201652;201653 201647 7 VSALDLAVLDQVEAR QGACLMETVELLQAKVSALDLAVLDQVEAR VSALDLAVLDQVEARLQSVLGKVNEIAKHK K V S A R L 3 1 0 2 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 3 0 0 15 0 1597.8675 Q13561;F8W1I6;H0YHL1 Q13561 268 282 DCTN2 Dynactin subunit 2 yes no 2 3.2374E-11 138.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 1 1 1 1 1.1735 1.0215 28.363 8 Median 1.0006 0.99825 NaN 1 0 Median 1.2008 1.0453 43.19 3 1 Median 0.90446 0.88173 NaN 1 0 Median 1.1467 0.98826 NaN 1 0 Median 1.2384 1.2444 NaN 1 0 Median 1.4005 1.2033 NaN 1 1 Median 71350000 34390000 36960000 2856800 1538900 1317900 13624000 6272500 7351700 32591000 16281000 16310000 9631200 4461700 5169500 6208300 2700000 3508300 6438000 3135500 3302500 37461 2824 39368 198371;198372;198373;198374;198375;198376;198377;198378;198379 201654;201655;201656;201657;201658;201659;201660;201661;201662;201663;201664;201665 201662 12 VSALEVLPDR GFDCVYGLELNKDERVSALEVLPDRVATSR NKDERVSALEVLPDRVATSRISDAHLADTM R V S D R V 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 1097.6081 Q9Y657 Q9Y657 108 117 SPIN1 Spindlin-1 yes yes 2 0.00055566 116.3 By MS/MS By MS/MS By matching 2 1 2 1.2621 1.0537 35.172 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93501 0.91075 27.068 2 1 Median 1.2621 1.0537 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7933 1.4009 48.195 2 0 Median 15564000 7900100 7663900 0 0 0 0 0 0 13444000 7012600 6431600 1719500 695940 1023500 0 0 0 400380 191570 208820 37462 4478 39369 198380;198381;198382;198383;198384 201666;201667;201668;201669;201670 201667 5 VSALPVVDEK TTPVYVALGIFVQHRVSALPVVDEKGRVVD FVQHRVSALPVVDEKGRVVDIYSKFDVINL R V S E K G 1 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 3 0 0 10 0 1055.5863 F8VYY9;P54619 F8VYY9 174 183 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 yes no 2 0.038411 49.418 By MS/MS By MS/MS 1 1 0.69746 0.64822 NaN 1 Median 0.69746 0.64822 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9274700 4360500 4914200 9274700 4360500 4914200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37463 1076 39370 198385;198386 201671;201672 201672 2 VSANKGEIGDATPFNDAVNVQK SRMTIGHLIECLQGKVSANKGEIGDATPFN IGDATPFNDAVNVQKISNLLSDYGYHLRGN K V S Q K I 3 0 3 2 0 1 1 2 0 1 0 2 0 1 1 1 1 0 0 3 0 0 22 1 2273.1288 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 982 1003 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 3 1.3988E-12 74.742 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 1 2 0.81929 0.90368 16.966 6 Median 0.92008 0.96312 NaN 1 0 Median 1.1303 1.0683 NaN 1 0 Median 0.72762 0.84791 NaN 1 0 Median 1.0789 1.0277 NaN 1 0 Median 0.67758 0.74412 13.111 2 0 Median NaN NaN NaN 0 0 Median 66222000 35587000 30635000 12654000 6220600 6433500 584600 259030 325570 23735000 12875000 10860000 1050100 405820 644290 28198000 15826000 12372000 0 0 0 37464 671 39371 198387;198388;198389;198390;198391;198392 201673;201674;201675;201676;201677;201678;201679 201676 7 VSANSVYGFTGAQVGK PLRRQVLDGRQLALKVSANSVYGFTGAQVG SANSVYGFTGAQVGKLPCLEISQSVTGFGR K V S G K L 2 0 1 0 0 1 0 3 0 0 0 1 0 1 0 2 1 0 1 3 0 0 16 0 1583.7944 M0R2B7;P28340;M0QZR8;A0A2R8Y7K6 M0R2B7 721 736 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 6.4162E-05 77.593 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.0067 0.90008 12.92 5 Median 0.93063 0.90008 NaN 1 0 Median 1.0067 0.88303 NaN 1 0 Median 0.78257 0.84898 NaN 1 0 Median 1.3361 1.12 NaN 1 0 Median 1.0204 1.0929 NaN 1 0 Median NaN NaN NaN 0 0 Median 24426000 13071000 11355000 12391000 7105900 5284600 2307800 1187700 1120000 4808500 2459600 2348900 789940 355120 434810 4128800 1962700 2166100 0 0 0 37465 1436 39372 198393;198394;198395;198396;198397 201680;201681;201682 201681 3 VSAPEVSVGHK VSTGREGQTPKAGLRVSAPEVSVGHKGGKP AGLRVSAPEVSVGHKGGKPGLTIQAPQLEV R V S H K G 1 0 0 0 0 0 1 1 1 0 0 1 0 0 1 2 0 0 0 3 0 0 11 0 1108.5877 Q09666 Q09666 331 341 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0026564 53.756 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.0429 1.0898 23.588 5 Median 1.1767 1.1049 NaN 1 0 Median 1.1481 0.99669 12.636 2 1 Median 1.0401 1.1429 NaN 1 0 Median 0.67583 0.64872 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11161000 5682700 5478300 2962100 1310600 1651600 4703600 2622700 2081000 1627600 796890 830740 1867600 952600 914990 0 0 0 0 0 0 37466 2749 39373 198398;198399;198400;198401;198402;198403 201683;201684;201685;201686 201685 4 VSAPGVLTAQDR GQEEMEASSSQDQSKVSAPGVLTAQDRVVG QSKVSAPGVLTAQDRVVGKPAQLGTQRSQE K V S D R V 2 1 0 1 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1212.6463 Q9C0C2;A0A2R8Y5C4 Q9C0C2 812 823 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 2 0.0037099 68.355 By MS/MS By MS/MS 1 1 1.2686 1.0972 2.6219 2 Median NaN NaN NaN 0 0 Median 1.3111 1.1178 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2275 1.0771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5695300 2557000 3138200 0 0 0 3920200 1660000 2260200 0 0 0 1775100 897050 878050 0 0 0 0 0 0 37467 3903 39374 198404;198405 201687;201688 201687 2 VSAPGVQGDVK VDLSLGSPKLKGDIKVSAPGVQGDVKGPQV GDIKVSAPGVQGDVKGPQVALKGSRVDIET K V S V K G 1 0 0 1 0 1 0 2 0 0 0 1 0 0 1 1 0 0 0 3 0 0 11 0 1055.5611 Q09666 Q09666 520 530 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00018651 76.943 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 1.0858 1.011 12.247 8 Median 1.0252 1.0178 NaN 1 0 Median 1.157 1.016 18.491 3 0 Median 1.0743 1.1552 NaN 1 0 Median 1.0974 1.006 1.3451 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26002000 11657000 14345000 3472300 1715300 1757000 11109000 4761200 6347500 5457800 2477800 2979900 5963300 2703100 3260200 0 0 0 0 0 0 37468 2749 39375 198406;198407;198408;198409;198410;198411;198412;198413 201689;201690;201691;201692;201693;201694;201695;201696 201693 8 VSAPGVQGDVKGPQVALK VDLSLGSPKLKGDIKVSAPGVQGDVKGPQV PGVQGDVKGPQVALKGSRVDIETPNLEGTL K V S L K G 2 0 0 1 0 2 0 3 0 0 1 2 0 0 2 1 0 0 0 4 0 0 18 1 1748.9785 Q09666 Q09666 520 537 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 1.6773E-06 67.416 By MS/MS By MS/MS By matching 1 1 1 0.92511 1.027 21.104 3 Plateau 0.89717 0.97679 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95391 1.0798 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80692 0.72007 NaN 1 0 Median 46408000 24146000 22262000 22319000 11300000 11019000 0 0 0 23503000 12527000 10976000 0 0 0 0 0 0 586330 319280 267050 37469 2749 39376 198414;198415;198416 201697;201698;201699 201699 3 VSASPLLYTLIEK YINLDKAVLGTSNFKVSASPLLYTLIEKTM FKVSASPLLYTLIEKTMQNVKHPVTGQFLY K V S E K T 1 0 0 0 0 0 1 0 0 1 3 1 0 0 1 2 1 0 1 1 0 0 13 0 1432.8177 P02786;G3V0E5 P02786 496 508 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 8.0372E-07 121.08 By MS/MS By MS/MS By matching 4 3 1 1.1874 1.1311 18.92 8 Median 1.1874 1.1311 8.5747 4 0 Median 1.1585 0.99737 33.133 3 0 Median 1.237 1.2878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85251000 39285000 45966000 20106000 8875900 11230000 63884000 29875000 34009000 1261500 533730 727730 0 0 0 0 0 0 0 0 0 37470 1836 39377 198417;198418;198419;198420;198421;198422;198423;198424 201700;201701;201702;201703;201704;201705;201706;201707 201705 8 VSAVDELAMATER EYKLLHEYWMALRNRVSAVDELAMATERLR NRVSAVDELAMATERLRVRDPREPKPNPPV R V S E R L 3 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 1 0 0 2 0 0 13 0 1390.6762 A0A0D9SFM0;Q149N8 A0A0D9SFM0 1353 1365 SHPRH E3 ubiquitin-protein ligase SHPRH yes no 2 0.00079121 78.342 By MS/MS 1 1.9952 2.2 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9952 2.2 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4891100 1605900 3285100 0 0 0 0 0 0 4891100 1605900 3285100 0 0 0 0 0 0 0 0 0 37471 268 39378 198425 201708 201708 1 VSAVPTNMAAK TTTGNSSLNSTSNTKVSAVPTNMAAKKTST SNTKVSAVPTNMAAKKTSTPKINFVGGNKL K V S A K K 3 0 1 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 11 0 1087.5696 Q96KR1 Q96KR1 485 495 ZFR Zinc finger RNA-binding protein yes yes 2 0.00020722 97.431 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 0.86825 0.77759 15.462 5 Median NaN NaN NaN 0 0 Median 0.86825 0.74358 NaN 1 0 Median 0.87084 0.93486 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73371 0.76633 24.842 2 0 Median 0.9363 0.77759 NaN 1 0 Median 18916000 10267000 8648800 0 0 0 4651800 2319500 2332200 7374400 3998700 3375600 0 0 0 5845500 3312600 2532900 1044600 636490 408090 37472 3697 39379 198426;198427;198428;198429;198430 201709;201710;201711;201712;201713;201714;201715;201716 201710 8 VSAWELINSEYFSEGR NLLLSVKYGRFQGQRVSAWELINSEYFSEG SAWELINSEYFSEGRRRQLLRRYRQREVTL R V S G R R 1 1 1 0 0 0 3 1 0 1 1 0 0 1 0 3 0 1 1 1 0 0 16 0 1885.8846 P58107;A0A075B730 P58107 831 846 EPPK1 Epiplakin yes no 2 0.0021034 52.693 By MS/MS 1 1.0018 1.0096 NaN 1 Median 1.0018 1.0096 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3717400 1630700 2086700 3717400 1630700 2086700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37473 2520 39380 198431 201717 201717 1 VSDGIYQHVDVR RPSSKGENHLTVTWKVSDGIYQHVDVREEG TWKVSDGIYQHVDVREEGKENAFSLGATLW K V S V R E 0 1 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 1 3 0 0 12 0 1386.6892 Q7KZ85 Q7KZ85 1373 1384 SUPT6H Transcription elongation factor SPT6 yes yes 2;3 0.0001209 90.05 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1559 1.1288 12.13 7 Median 0.99342 0.95723 NaN 1 1 Median 1.3697 1.1621 23.062 2 0 Median 1.0643 1.1698 5.0531 2 1 Median 1.2836 1.1281 3.6073 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34300000 15240000 19060000 4236500 1724100 2512400 8420800 4228200 4192600 14613000 6321400 8291600 7029500 2965900 4063600 0 0 0 0 0 0 37474 3213 39381 198432;198433;198434;198435;198436;198437;198438;198439 201718;201719;201720;201721;201722;201723;201724;201725;201726 201723 9 VSDILHSIFSSYK SLQDEDDNDVYILTKVSDILHSIFSSYKEK TKVSDILHSIFSSYKEKVLPWFEQLLPLIV K V S Y K E 0 0 0 1 0 0 0 0 1 2 1 1 0 1 0 4 0 0 1 1 0 0 13 0 1494.7718 O00410;H0Y8C6 O00410 842 854 IPO5 Importin-5 yes no 2 0.00073014 66.595 By MS/MS 1 0.81888 0.69432 NaN 1 Median NaN NaN NaN 0 0 Median 0.81888 0.69432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7982100 3768400 4213700 0 0 0 7982100 3768400 4213700 0 0 0 0 0 0 0 0 0 0 0 0 37475 1460 39382 198440 201727;201728 201727 2 VSDIQWFR EGISQPIWLVSDTRRVSDIQWFREAYGAVT LVSDTRRVSDIQWFREAYGAVTQTVRVVAL R V S F R E 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 8 0 1049.5294 Q15126 Q15126 112 119 PMVK Phosphomevalonate kinase yes yes 2 0.0029873 102.71 By MS/MS By matching 3 2 1.0177 1.0196 32.258 5 Median 1.0161 0.96124 26.63 3 0 Median 1.6229 1.3701 2.3096 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10349000 5074600 5274800 9767900 4860800 4907100 581560 213790 367770 0 0 0 0 0 0 0 0 0 0 0 0 37476 2931 39383 198441;198442;198443;198444;198445 201729;201730 201730 2 VSDLQMLLGFVGR AAELVEAKNMVMSFRVSDLQMLLGFVGRSK FRVSDLQMLLGFVGRSKSGLKHELVTRALQ R V S G R S 0 1 0 1 0 1 0 2 0 0 3 0 1 1 0 1 0 0 0 2 0 0 13 0 1433.7701 Q8N2W9 Q8N2W9 17 29 PIAS4 E3 SUMO-protein ligase PIAS4 yes yes 2 0.00026933 78.934 By matching By MS/MS 1 2 1.0909 1.1117 7.7191 3 Median 1.0909 1.0499 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1644 1.1661 6.7612 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3664200 1696700 1967500 232620 113640 118980 0 0 0 3431600 1583100 1848500 0 0 0 0 0 0 0 0 0 37477 3362 39384 198446;198447;198448 201731;201732 201731 2 VSDNMSHLMVDFAQER GVTMAPAFRLSLKAKVSDNMSHLMVDFAQE SDNMSHLMVDFAQERQMLQALKFLPVPSAP K V S E R Q 1 1 1 2 0 1 1 0 1 0 1 0 2 1 0 2 0 0 0 2 0 0 16 0 1877.84 M0R366;Q9BTV5;M0R2F6 M0R366 138 153 FSD1 Fibronectin type III and SPRY domain-containing protein 1 yes no 3 3.582E-05 52.453 By MS/MS By matching 1 1 0.89159 0.83079 4.276 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85223 0.8563 NaN 1 0 Median 0.93276 0.80605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11236000 5981900 5254300 0 0 0 0 0 0 10197000 5379100 4817600 1039600 602810 436740 0 0 0 0 0 0 37478 1438 39385 198449;198450 201733;201734 201733 2 VSDSAIIHTSMGDIHTK KEEVMAATQAEGPKRVSDSAIIHTSMGDIH DSAIIHTSMGDIHTKLFPVECPKTVENFCV R V S T K L 1 0 0 2 0 0 0 1 2 3 0 1 1 0 0 3 2 0 0 1 0 0 17 0 1810.8883 Q96BP3;F5H7P7 Q96BP3 490 506 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 4 1.9375E-05 50.053 By MS/MS By matching 1 1 1.3601 1.2827 19.523 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0921 1.1173 NaN 1 0 Median 1.6939 1.4726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9821800 4530000 5291900 0 0 0 0 0 0 9070600 4249800 4820800 751210 280120 471090 0 0 0 0 0 0 37479 3609 39386 198451;198452 201735;201736 201736 2 VSDSISAQYPVVDHEFDAVVVGAGGAGLR GFHFTVDGNKRASAKVSDSISAQYPVVDHE EFDAVVVGAGGAGLRAAFGLSEAGFNTACV K V S L R A 4 1 0 3 0 1 1 4 1 1 1 0 0 1 1 3 0 0 1 6 0 0 29 0 2914.4461 P31040;D6RFM5;A0A087X1I3;A0A494C1T6 P31040 47 75 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 3 8.7876E-21 66.886 By MS/MS 1 0.89521 0.85459 NaN 1 Median 0.89521 0.85459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9516900 5029800 4487100 9516900 5029800 4487100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37480 2200 39387 198453 201737;201738;201739;201740 201739 4 VSDSLTDLALK LNVTQASLSAQVNTKVSDSLTDLALK____ VNTKVSDSLTDLALK_______________ K V S L K - 1 0 0 2 0 0 0 0 0 0 3 1 0 0 0 2 1 0 0 1 0 0 11 0 1160.6289 Q8N3C0 Q8N3C0 2192 2202 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.008052 59.426 By MS/MS 1 2.8267 2.8308 NaN 1 Median 2.8267 2.8308 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10751000 2918300 7832700 10751000 2918300 7832700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37481 3366 39388 198454 201741 201741 1 VSDVIWNSLSR YPREGGVSSRELVKKVSDVIWNSLSRSYFK LVKKVSDVIWNSLSRSYFKDRAHIQSLFSF K V S S R S 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 3 0 1 0 2 0 0 11 0 1274.6619 E7EN32;O00255;E7ENS2;E7EPR4;E7ET29;Q9GZQ5 E7EN32 121 131 MEN1 Menin yes no 2 0.00019593 103.7 By MS/MS By matching 1 1 1.2116 1.1271 7.3117 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1677 1.1869 NaN 1 0 Median 1.2572 1.0703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13781000 6296100 7485000 0 0 0 0 0 0 13440000 6156500 7283600 341050 139640 201410 0 0 0 0 0 0 37482 860 39389 198455;198456 201742;201743 201742 2 VSDYEMK ADTLALVFEAPNQEKVSDYEMKLMDLDVEQ FEAPNQEKVSDYEMKLMDLDVEQLGIPEQE K V S M K L 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 7 0 870.37932 P12004 P12004 111 117 PCNA Proliferating cell nuclear antigen yes yes 2 0.010865 81.297 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.0723 0.9889 3.3107 5 Median 1.0723 0.99301 NaN 1 0 Median 1.1791 0.9889 NaN 1 0 Median 1.0167 0.98294 NaN 1 0 Median 1.15 0.96907 NaN 1 0 Median 1.0277 1.0559 NaN 1 0 Median NaN NaN NaN 0 0 Median 20624000 9840300 10784000 10406000 5025400 5380700 4807900 2229000 2578900 1612500 790790 821740 3020600 1393500 1627100 777170 401620 375550 0 0 0 37483 1974 39390 198457;198458;198459;198460;198461 201744;201745;201746;201747;201748 201748 5 VSEEAESQQQWDTSK EERKRRPPSPEPSTKVSEEAESQQQWDTSK VSEEAESQQQWDTSKGEQVSQNGLPAEQGS K V S S K G 1 0 0 1 0 3 3 0 0 0 0 1 0 0 0 3 1 1 0 1 0 0 15 0 1750.7646 Q01082;A0A087WUZ3 Q01082 2109 2123 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 6.9781E-08 126.76 By MS/MS By matching 2 1 0.99716 0.902 13.204 3 Median NaN NaN NaN 0 0 Median 0.95801 0.83652 17.631 2 0 Median NaN NaN NaN 0 0 Median 0.99716 0.902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7925200 3798100 4127100 0 0 0 5505300 2659500 2845800 0 0 0 2419900 1138600 1281400 0 0 0 0 0 0 37484 2681 39391 198462;198463;198464 201749;201750 201749 2 VSEEAESQQQWDTSKGEQVSQNGLPAEQGSPR EERKRRPPSPEPSTKVSEEAESQQQWDTSK QVSQNGLPAEQGSPRMAETVDTSEMVNGAT K V S P R M 2 1 1 1 0 6 5 3 0 0 1 1 0 0 2 5 1 1 0 2 0 0 32 1 3485.5931 Q01082;A0A087WUZ3 Q01082 2109 2140 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 3 2.1285E-05 31.488 By MS/MS By matching By matching 1 1 1 0.68897 0.69287 16.351 3 Median 0.68897 0.69287 NaN 1 0 Median 0.95448 0.88877 NaN 1 0 Median 0.54531 0.65311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61780000 34014000 27766000 9530000 5337500 4192400 5543000 2602800 2940100 46707000 26074000 20633000 0 0 0 0 0 0 0 0 0 37485 2681 39392 198465;198466;198467 201751;201752 201751 2 VSEEIEDIIK QEKLKAIEPNDYTGKVSEEIEDIIKKGETQ DYTGKVSEEIEDIIKKGETQTL________ K V S I K K 0 0 0 1 0 0 3 0 0 3 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1173.6129 O75223;M0QZK8 O75223 172 181 GGCT Gamma-glutamylcyclotransferase yes no 2 0.00033784 85.731 By MS/MS By MS/MS By MS/MS 2 1 2 0.72627 0.69516 40.85 5 Median 0.56003 0.53667 67.347 2 1 Median 1.1169 0.93914 NaN 1 0 Median 0.72389 0.69019 1.0153 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46233000 24035000 22198000 36740000 19205000 17534000 4726700 2118400 2608300 4766100 2710700 2055300 0 0 0 0 0 0 0 0 0 37486 1656 39393 198468;198469;198470;198471;198472 201753;201754;201755;201756;201757;201758 201755 6 VSEEIFFGR KEQLLDRMCMTLGGRVSEEIFFGRITTGAQ MTLGGRVSEEIFFGRITTGAQDDLRKVTQS R V S G R I 0 1 0 0 0 0 2 1 0 1 0 0 0 2 0 1 0 0 0 1 0 0 9 0 1082.5397 Q9Y4W6 Q9Y4W6 633 641 AFG3L2 AFG3-like protein 2 yes yes 2 0.00059728 110.81 By MS/MS By matching By matching By matching 1 1 1 1 1.0644 1.0626 87.092 4 Median 1.0602 1.0028 NaN 1 0 Median 0.2193 0.20967 NaN 1 0 Median 1.0686 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6757 1.4144 NaN 1 0 Median 23006000 10740000 12266000 17820000 8151400 9668900 962260 707940 254310 4027500 1805600 2221900 0 0 0 0 0 0 196110 75284 120830 37487 4449 39394 198473;198474;198475;198476 201759;201760 201760 2 VSEFNVSSEGSGEK KNRRKLAERSEASLKVSEFNVSSEGSGEKL KVSEFNVSSEGSGEKLVLADLLEPVKTSSS K V S E K L 0 0 1 0 0 0 3 2 0 0 0 1 0 1 0 4 0 0 0 2 0 0 14 0 1454.6525 Q9BVJ6 Q9BVJ6 71 84 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 4.583E-07 117.23 By MS/MS By MS/MS 1 1 1.2002 1.1067 1.9145 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0922 1.1218 NaN 1 0 Median 1.3189 1.0919 NaN 1 0 Median 8428600 4102900 4325800 0 0 0 0 0 0 0 0 0 0 0 0 7123300 3539500 3583800 1305400 563370 741980 37488 3855 39395 198477;198478 201761;201762;201763 201761 3 VSEGGPAEIAGLQIGDK PFSEDKTDKGIYVTRVSEGGPAEIAGLQIG EGGPAEIAGLQIGDKIMQVNGWDMTMVTHD R V S D K I 2 0 0 1 0 1 2 4 0 2 1 1 0 0 1 1 0 0 0 1 0 0 17 0 1639.8417 O14907 O14907 60 76 TAX1BP3 Tax1-binding protein 3 yes yes 2 4.3088E-11 108.59 By MS/MS By matching 2 1 1.022 0.92302 28.959 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1462 1.1596 32.265 2 0 Median 1.022 0.85139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19737000 9521400 10215000 0 0 0 0 0 0 19461000 9374500 10087000 275320 146920 128390 0 0 0 0 0 0 37489 1501 39396 198479;198480;198481 201764;201765;201766;201767 201766 4 VSEGIDFVHHYGR ENGRGAILLSVARGKVSEGIDFVHHYGRAV GKVSEGIDFVHHYGRAVIMFGVPYVYTQSR K V S G R A 0 1 0 1 0 0 1 2 2 1 0 0 0 1 0 1 0 0 1 2 0 0 13 0 1514.7266 P18074;E7EVE9;A8MX75 P18074 604 616 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes no 3 0.000267 61.235 By matching By MS/MS By matching 1 1 1 1.6504 1.6126 125.23 3 Median 1.6504 1.6126 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87824 0.8955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9.5961 9.8964 NaN 1 0 Median 21446000 7070100 14375000 3464000 1233400 2230600 0 0 0 10147000 5218300 4928500 0 0 0 0 0 0 7834800 618430 7216300 37490 2053 39397 198482;198483;198484 201768;201769 201768 2 VSEIPLTR GFPSYCQSLKILGEKVSEIPLTRDNVSEIL LKILGEKVSEIPLTRDNVSEILRCFLMAYG K V S T R D 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 8 0 913.52328 J3KPG5;F8VU39;Q9UIF9 J3KPG5 897 904 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes no 2 0.0078694 65.252 By MS/MS 1 0.92937 0.7718 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92937 0.7718 NaN 1 0 Median 3541500 1699600 1841900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3541500 1699600 1841900 37491 1065 39398 198485 201770 201770 1 VSELHLEVK TVEKAWMAFMSEAERVSELHLEVKASLMND MSEAERVSELHLEVKASLMNDDFEKIKNWQ R V S V K A 0 0 0 0 0 0 2 0 1 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 1052.5866 A0A0U1RR22;Q9UNF0;B0QYG7;B0QYG8 A0A0U1RR22 93 101 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes no 2 0.00052249 117.89 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.0985 1.0494 8.4413 5 Median 1.0985 1.0476 NaN 1 0 Median 1.0593 0.88954 NaN 1 0 Median 1.0456 1.0767 NaN 1 0 Median 1.2693 1.0747 3.374 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20894000 10177000 10717000 6148500 2915000 3233500 8399400 4470100 3929300 2269000 1058200 1210800 4077400 1733700 2343700 0 0 0 0 0 0 37492 307 39399 198486;198487;198488;198489;198490 201771;201772;201773;201774;201775 201774 5 VSELKEELK ______________________________ NVKKLKVSELKEELKKRRLSDKGLKAELME K V S L K K 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 9 1 1073.5968 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 13 21 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.00047584 146.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 3 4 5 1.0951 1.0742 11.8 17 Median 1.0238 1.0742 NaN 1 0 Median 1.0882 1.0276 13.147 2 0 Median 1.1 1.2621 12.411 2 0 Median 1.261 1.1311 7.2455 3 0 Median 0.94761 1.2121 14.478 4 0 Linear 1.1117 1.0214 7.029 5 0 Median 124430000 59016000 65416000 8443600 4064200 4379400 34918000 16185000 18732000 11040000 5283400 5756800 15618000 7161500 8456000 44620000 21913000 22707000 9793400 4408600 5384800 37493 2680 39400 198491;198492;198493;198494;198495;198496;198497;198498;198499;198500;198501;198502;198503;198504;198505;198506;198507 201776;201777;201778;201779;201780;201781;201782;201783;201784;201785;201786;201787;201788;201789;201790;201791;201792;201793;201794;201795;201796;201797;201798 201782 23 VSELKEELKK ______________________________ VKKLKVSELKEELKKRRLSDKGLKAELMER K V S K K R 0 0 0 0 0 0 3 0 0 0 2 3 0 0 0 1 0 0 0 1 0 0 10 2 1201.6918 Q00839;A0A1X7SBS1;A0A1W2PPS1 Q00839 13 22 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2;3 9.1269E-15 183.72 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 13 6 12 8 1.0378 1.1575 21.47 48 Median 0.89723 1.0148 43.245 6 0 Median 1.1489 1.0912 20.566 4 1 Median 1.03 1.217 11.007 13 0 Median 1.3108 1.3417 10.274 6 0 Median 1.0021 1.1105 6.9473 12 0 Median 1.1819 1.1182 10.409 7 0 Median 283750000 131400000 152360000 9229500 4793100 4436500 85786000 37060000 48726000 27389000 13091000 14298000 26686000 11999000 14687000 115820000 55927000 59898000 18838000 8525700 10312000 37494 2680 39401 198508;198509;198510;198511;198512;198513;198514;198515;198516;198517;198518;198519;198520;198521;198522;198523;198524;198525;198526;198527;198528;198529;198530;198531;198532;198533;198534;198535;198536;198537;198538;198539;198540;198541;198542;198543;198544;198545;198546;198547;198548;198549;198550;198551;198552;198553;198554;198555;198556 201799;201800;201801;201802;201803;201804;201805;201806;201807;201808;201809;201810;201811;201812;201813;201814;201815;201816;201817;201818;201819;201820;201821;201822;201823;201824;201825;201826;201827;201828;201829;201830;201831;201832;201833;201834;201835 201819 37 VSEMSSFQR VPEIMDRIYKNVMNKVSEMSSFQRNLFILA KNVMNKVSEMSSFQRNLFILAYNYKMEQIS K V S Q R N 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 3 0 0 0 1 0 0 9 0 1069.4862 O95573 O95573 398 406 ACSL3 Long-chain-fatty-acid--CoA ligase 3 yes yes 2 0.00025233 114.28 By MS/MS By MS/MS 1 3 1.1885 1.1068 32.002 4 Median 0.95537 0.94557 NaN 1 0 Median 1.4785 1.2955 37.729 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8449200 3765900 4683400 1889000 810380 1078600 6560200 2955500 3604800 0 0 0 0 0 0 0 0 0 0 0 0 37495 1780 39402 198557;198558;198559;198560 201836;201837;201838 201838 3 VSEPVLSLPVR SALCFGCKFQFKPIRVSEPVLSLPVRRGSV KPIRVSEPVLSLPVRRGSVTVLSGYAADEI R V S V R R 0 1 0 0 0 0 1 0 0 0 2 0 0 0 2 2 0 0 0 3 0 0 11 0 1194.6972 Q6P6C2 Q6P6C2 239 249 ALKBH5 RNA demethylase ALKBH5 yes yes 2 0.0066828 63.216 By MS/MS 1 0.83137 0.817 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83137 0.817 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15501000 7692800 7807900 0 0 0 0 0 0 15501000 7692800 7807900 0 0 0 0 0 0 0 0 0 37496 3163 39403 198561 201839 201839 1 VSEQGLIEILK NYLIQMARYGQLSEKVSEQGLIEILKKVSQ LSEKVSEQGLIEILKKVSQQTEKTTTVKFN K V S L K K 0 0 0 0 0 1 2 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1227.7075 O14737;K7EQA1 O14737 87 97 PDCD5 Programmed cell death protein 5 yes no 2 0.00018838 109.29 By MS/MS By matching By MS/MS 1 1 1 1.1496 1.0428 13.186 3 Median 1.1496 1.0428 NaN 1 0 Median 1.1109 0.92949 NaN 1 0 Median 1.2373 1.2091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24008000 10726000 13281000 18708000 8358900 10349000 1880300 858400 1021900 3419300 1509100 1910200 0 0 0 0 0 0 0 0 0 37497 1491 39404 198562;198563;198564 201840;201841;201842 201840 3 VSEQGLIEILKK NYLIQMARYGQLSEKVSEQGLIEILKKVSQ SEKVSEQGLIEILKKVSQQTEKTTTVKFNR K V S K K V 0 0 0 0 0 1 2 1 0 2 2 2 0 0 0 1 0 0 0 1 0 0 12 1 1355.8024 O14737;K7EQA1 O14737 87 98 PDCD5 Programmed cell death protein 5 yes no 2;3 0.0002265 87.298 By MS/MS By matching By MS/MS 2 1 2 1.2486 1.1146 10.344 5 Median 1.2306 1.1524 4.7174 2 0 Median 1.2486 1.0824 NaN 1 0 Median 1.0305 1.1146 19.433 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65875000 28053000 37821000 60396000 25640000 34756000 1148000 453360 694600 4330500 1960000 2370500 0 0 0 0 0 0 0 0 0 37498 1491 39405 198565;198566;198567;198568;198569 201843;201844;201845;201846;201847 201845 5 VSESNGEFFFK RLRLVLSELLAIMNKVSESNGEFFFKSSEL IMNKVSESNGEFFFKSSELFESPVYLEEAA K V S F K S 0 0 1 0 0 0 2 1 0 0 0 1 0 3 0 2 0 0 0 1 0 0 11 0 1289.5928 J3KMZ7;Q9H0H0;A0A2R8Y7F8;A0A2R8Y4Z6 J3KMZ7 145 155 INTS2 Integrator complex subunit 2 yes no 2 0.0020633 55.567 By MS/MS 1 0.98881 1.0666 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98881 1.0666 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4259400 2328400 1931000 0 0 0 0 0 0 4259400 2328400 1931000 0 0 0 0 0 0 0 0 0 37499 1298 39406 198570 201848;201849 201849 2 VSEYVPEIVNFVQK DMEALNVLPPDVLTRVSEYVPEIVNFVQKI RVSEYVPEIVNFVQKIVDNGYGYVSNGSVY R V S Q K I 0 0 1 0 0 1 2 0 0 1 0 1 0 1 1 1 0 0 1 4 0 0 14 0 1649.8665 P49589;B4DKY1 P49589 241 254 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.0010028 52.49 By MS/MS By MS/MS By MS/MS 1 1 1 0.99257 0.9105 11.945 3 Plateau 0.99865 0.92944 NaN 1 0 Median 0.83874 0.74122 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89608 0.77671 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11706000 6019700 5686200 5942900 3041300 2901600 2198000 1141600 1056300 0 0 0 3565000 1836700 1728200 0 0 0 0 0 0 37500 2386 39407 198571;198572;198573 201850;201851;201852;201853 201851 4 VSFELFADK TVFFDIAVDGEPLGRVSFELFADKVPKTAE GEPLGRVSFELFADKVPKTAENFRALSTGE R V S D K V 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1054.5335 P62937;F8WE65;C9J5S7 P62937 20 28 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2 0.00094944 88.948 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 5 4 3 4 2 1.2296 1.0683 23.723 21 Median 1.1121 1.0386 44.743 3 0 Median 1.2431 1.0683 18.974 5 0 Median 1.1281 1.0775 12.391 4 0 Median 1.2598 1.0447 6.9083 3 0 Median 1.2854 1.3845 41.118 4 0 Median 1.3473 1.1132 8.3986 2 0 Median 925510000 422850000 502650000 223550000 107570000 115980000 46456000 19504000 26952000 633730000 286280000 347450000 7410200 3208100 4202100 11488000 5199600 6288600 2869200 1096600 1772600 37501 2611 39408 198574;198575;198576;198577;198578;198579;198580;198581;198582;198583;198584;198585;198586;198587;198588;198589;198590;198591;198592;198593;198594 201854;201855;201856;201857;201858;201859;201860;201861;201862;201863;201864;201865;201866;201867;201868;201869 201868 16 VSFELFADKVPK TVFFDIAVDGEPLGRVSFELFADKVPKTAE LGRVSFELFADKVPKTAENFRALSTGEKGF R V S P K T 1 0 0 1 0 0 1 0 0 0 1 2 0 2 1 1 0 0 0 2 0 0 12 1 1378.7497 P62937;F8WE65;C9J5S7 P62937 20 31 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase yes no 2;3 3.6551E-05 132.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 5 2 7 1 0.95661 0.97226 18.427 26 Median 0.93782 0.91555 6.6233 6 0 Median 1.19 1.0532 21.279 5 0 Median 0.93475 0.91534 18.336 5 0 Median 1.1247 1.0153 5.2442 2 0 Median 0.97989 1.0905 11.394 7 0 Median 0.77576 0.66551 NaN 1 0 Median 6246700000 3067800000 3178900000 2063400000 1040100000 1023300000 260430000 116510000 143910000 3688600000 1798900000 1889600000 143740000 66360000 77375000 86294000 44028000 42266000 4281100 1942700 2338400 37502 2611 39409 198595;198596;198597;198598;198599;198600;198601;198602;198603;198604;198605;198606;198607;198608;198609;198610;198611;198612;198613;198614;198615;198616;198617;198618;198619;198620 201870;201871;201872;201873;201874;201875;201876;201877;201878;201879;201880;201881;201882;201883;201884;201885;201886;201887;201888;201889;201890;201891;201892;201893;201894;201895;201896;201897;201898;201899;201900;201901;201902 201896 33 VSFLLPTLR SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD VNDNLKVSFLLPTLRKVNGKDASSTYSQVE K V S L R K 0 1 0 0 0 0 0 0 0 0 3 0 0 1 1 1 1 0 0 1 0 0 9 0 1044.6332 Q9UFC0;H7C5S6 Q9UFC0 112 120 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0014358 81.548 By MS/MS By matching By matching 6 4 1 1.0026 1.0277 11.24 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9816 1.0056 8.6531 6 0 Median 1.2077 1.0529 1.9144 4 0 Median 0.78466 0.75877 NaN 1 0 Median NaN NaN NaN 0 0 Median 26612000 13786000 12826000 0 0 0 0 0 0 24455000 12739000 11715000 1616800 742930 873850 540490 303710 236770 0 0 0 37503 4258 39410 198621;198622;198623;198624;198625;198626;198627;198628;198629;198630;198631 201903;201904;201905;201906;201907 201906 5 VSFTGSVPTGMK AATGQFLCQHPDVAKVSFTGSVPTGMKIME VAKVSFTGSVPTGMKIMEMSAKGIKPVTLE K V S M K I 0 0 0 0 0 0 0 2 0 0 0 1 1 1 1 2 2 0 0 2 0 0 12 0 1209.6064 P49189 P49189 228 239 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.00051621 76.465 By MS/MS By matching 1 1 1.093 0.96638 16.58 2 Median 0.9333 0.85947 NaN 1 0 Median 1.28 1.0866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39910000 20304000 19605000 32209000 16871000 15337000 7701000 3433000 4268000 0 0 0 0 0 0 0 0 0 0 0 0 37504 2372 39411 198632;198633 201908;201909 201908 2 VSFYQLSHFLQCK GAAAWWFIAADGGPRVSFYQLSHFLQCKED PRVSFYQLSHFLQCKEDNPDFEGVDCAIFE R V S C K E 0 0 0 0 1 2 0 0 1 0 2 1 0 2 0 2 0 0 1 1 0 0 13 0 1655.813 P16615;H7C5W9 P16615 864 876 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes no 2 0.046987 25.386 By MS/MS 2 1.5427 1.3459 NaN 1 Median NaN NaN NaN 0 0 Median 1.5427 1.3459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3539800 1273600 2266100 0 0 0 3539800 1273600 2266100 0 0 0 0 0 0 0 0 0 0 0 0 37505 2031 39412 198634;198635 201910 201910 1 VSGAQEMVSSAK TEKVLADTKELVSSKVSGAQEMVSSAKDTV SSKVSGAQEMVSSAKDTVATQLSEAVDATR K V S A K D 2 0 0 0 0 1 1 1 0 0 0 1 1 0 0 3 0 0 0 2 0 0 12 0 1192.5758 O60664;K7ERZ3;K7EL96;K7ER39 O60664 129 140 PLIN3 Perilipin-3 yes no 2 0.00015847 102.52 By MS/MS By MS/MS 1 3 0.92744 0.79474 19.956 4 Median 1.1551 1.098 NaN 1 1 Median 0.86341 0.74215 9.9281 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13152000 6751000 6400900 3824700 1690100 2134500 9327200 5060800 4266300 0 0 0 0 0 0 0 0 0 0 0 0 37506 1624 39413 198636;198637;198638;198639 201911;201912;201913;201914 201913 4 VSGDDVIIGK YDKLDDDGLIAPGVRVSGDDVIIGKTVTLP APGVRVSGDDVIIGKTVTLPENEDELESTN R V S G K T 0 0 0 2 0 0 0 2 0 2 0 1 0 0 0 1 0 0 0 2 0 0 10 0 1001.5393 C9J2Y9;P30876;A0A1W2PPT5;C9J4M6 C9J2Y9 853 862 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 yes no 2 0.0050313 51.113 By MS/MS 1 1.0775 0.91247 NaN 1 Median NaN NaN NaN 0 0 Median 1.0775 0.91247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9802500 4114600 5687900 0 0 0 9802500 4114600 5687900 0 0 0 0 0 0 0 0 0 0 0 0 37507 671 39414 198640 201915 201915 1 VSGGLEVLAEK PKLNKLKKLELSDNRVSGGLEVLAEKCPNL SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK R V S E K C 1 0 0 0 0 0 2 2 0 0 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1100.6077 P39687;H0YN26;O43423 P39687 76 86 ANP32A;ANP32C Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member C yes no 2 0.00018083 111.06 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.1592 1.1106 28.989 5 Median 1.0217 0.92299 NaN 1 0 Median 1.3288 1.1136 NaN 1 0 Median 0.75693 0.79734 47.445 2 0 Median 1.3166 1.1106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 197300000 97181000 100120000 148940000 73509000 75434000 28239000 12318000 15920000 17783000 10342000 7440800 2338700 1011100 1327600 0 0 0 0 0 0 37508 2282 39415 198641;198642;198643;198644;198645 201916;201917;201918;201919;201920;201921;201922 201916 7 VSGGPSLEQR LILYKELYYRHIYAKVSGGPSLEQRFESYY HIYAKVSGGPSLEQRFESYYNYCNLFNYIL K V S Q R F 0 1 0 0 0 1 1 2 0 0 1 0 0 0 1 2 0 0 0 1 0 0 10 0 1028.5251 B0QY89;Q9Y262;B0QY90;C9JHP4;C9K0Q7 B0QY89 187 196 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.00036469 96.331 By MS/MS 2 1.2969 1.1309 35.464 2 Median NaN NaN NaN 0 0 Median 1.2969 1.1309 35.464 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9601700 4328700 5273000 0 0 0 9601700 4328700 5273000 0 0 0 0 0 0 0 0 0 0 0 0 37509 554 39416 198646;198647 201923;201924 201924 2 VSGGTPIKIEDPNQFVPLNTNPNEVLEK PRTKITWMKAEDSSKVSGGTPIKIEDPNQF QFVPLNTNPNEVLEKRNKIREQNRYDLKTA K V S E K R 0 0 4 1 0 1 3 2 0 2 2 2 0 1 4 1 2 0 0 3 0 0 28 1 3048.5768 Q9UEY8 Q9UEY8 477 504 ADD3 Gamma-adducin yes yes 3 0.048129 16.532 By MS/MS By MS/MS By matching 1 2 1 0.39161 0.44289 15.938 4 Median 0.35588 0.36849 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.39161 0.44289 3.1208 2 1 Median 0.58804 0.54297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13396000 10027000 3369000 1554800 1013400 541380 0 0 0 11657000 8896300 2760300 184110 116850 67260 0 0 0 0 0 0 37510 4257 39417 198648;198649;198650;198651 201925;201926;201927 201925 3 VSGHVITDIVEGK QGGTSVVIANGTHPKVSGHVITDIVEGKKV PKVSGHVITDIVEGKKVGTFFSEVKPAGPT K V S G K K 0 0 0 1 0 0 1 2 1 2 0 1 0 0 0 1 1 0 0 3 0 0 13 0 1352.73 P54886 P54886 335 347 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 7.8276E-09 136.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 4 2 1.176 1.1475 29.673 15 Median 0.97204 0.8777 NaN 1 0 Median 1.3631 1.1911 3.6869 2 0 Median 1.2028 1.2927 7.785 6 2 Median 1.1879 1.0321 46.878 4 0 Median NaN NaN NaN 0 0 Median 1.0739 0.89836 5.2507 2 0 Median 194570000 86426000 108150000 13975000 6840100 7135400 17306000 7060700 10245000 146660000 65803000 80862000 13280000 5152800 8127200 0 0 0 3345900 1568800 1777100 37511 2488 39418 198652;198653;198654;198655;198656;198657;198658;198659;198660;198661;198662;198663;198664;198665;198666;198667 201928;201929;201930;201931;201932;201933;201934;201935;201936;201937;201938;201939;201940;201941;201942;201943;201944 201930 17 VSGHVITDIVEGKK QGGTSVVIANGTHPKVSGHVITDIVEGKKV KVSGHVITDIVEGKKVGTFFSEVKPAGPTV K V S K K V 0 0 0 1 0 0 1 2 1 2 0 2 0 0 0 1 1 0 0 3 0 0 14 1 1480.8249 P54886 P54886 335 348 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 2.0955E-06 91.441 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 1 3 1.2756 1.3366 27.469 10 Median 0.97791 1.0055 NaN 1 0 Median 1.6758 1.6208 NaN 1 0 Median 1.3108 1.4974 21.698 3 0 Median 1.1182 1.0924 NaN 1 0 Median 1.005 1.1261 NaN 1 0 Median 1.4515 1.3112 37.747 3 0 Median 70299000 31791000 38507000 9677000 4677900 4999200 2180000 964000 1216000 47732000 20946000 26786000 2051700 943330 1108400 4842600 2680600 2162000 3815300 1579200 2236100 37512 2488 39419 198668;198669;198670;198671;198672;198673;198674;198675;198676;198677 201945;201946;201947;201948;201949 201948 3 VSGISFPTTELLR SSLWRSSGAPETLQRVSGISFPTTELLRVW QRVSGISFPTTELLRVWEAWREEAELRDHR R V S L R V 0 1 0 0 0 0 1 1 0 1 2 0 0 1 1 2 2 0 0 1 0 0 13 0 1418.7769 Q9BW92 Q9BW92 276 288 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 2 0.0010284 60.518 By MS/MS By MS/MS By matching 1 1 1 0.98615 1.0313 69.265 3 Median 0.81778 0.80638 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98615 1.0313 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.2803 2.9697 NaN 1 0 Median 7805600 4034200 3771400 2210800 1210600 1000200 0 0 0 5309500 2765600 2543900 0 0 0 0 0 0 285250 58000 227250 37513 3867 39420 198678;198679;198680 201950;201951;201952;201953 201953 4 VSGKPLLIGTDVSLAR DHVKFCKYAAELIERVSGKPLLIGTDVSLA SGKPLLIGTDVSLARLQKADVVAQSRISFP R V S A R L 1 1 0 1 0 0 0 2 0 1 3 1 0 0 1 2 1 0 0 2 0 0 16 1 1624.9512 Q9Y4B6 Q9Y4B6 816 831 VPRBP Protein VPRBP yes yes 3 0.0015538 33.697 By MS/MS By matching 1 1 0.63076 0.622 25.137 2 Median 0.7356 0.743 NaN 1 0 Median 0.54087 0.52072 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5312300 3074200 2238100 4506000 2502700 2003200 806310 571420 234890 0 0 0 0 0 0 0 0 0 0 0 0 37514 4442 39421 198681;198682 201954 201954 1 VSGLGEKVDVGKDQEFTVK FSVAVSPSLDLSKIKVSGLGEKVDVGKDQE GEKVDVGKDQEFTVKSKGAGGQGKVASKIV K V S V K S 0 0 0 2 0 1 2 3 0 0 1 3 0 1 0 1 1 0 0 4 0 0 19 2 2034.0633 P21333;Q60FE5;A0A087WWY3 P21333 976 994 FLNA Filamin-A no no 3;4 3.401E-14 108.71 By MS/MS 3 1.2137 1.4337 22.513 3 Median 1.2137 1.4337 22.513 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54049000 22340000 31710000 54049000 22340000 31710000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37515 2088;3120 39422 198683;198684;198685 201955;201956;201957;201958;201959 201957 5 VSGLMMANHTSISSLFER VALSRKSPYLPSAHRVSGLMMANHTSISSL LMMANHTSISSLFERTCRQYDKLRKREAFL R V S E R T 1 1 1 0 0 0 1 1 1 1 2 0 2 1 0 4 1 0 0 1 0 0 18 0 1978.9605 P23258 P23258 373 390 TUBG1 Tubulin gamma-1 chain yes yes 3 4.6302E-09 77.468 By MS/MS 3 1.0668 1.0704 12.215 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0668 1.0704 12.215 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22629000 9587700 13042000 0 0 0 0 0 0 22629000 9587700 13042000 0 0 0 0 0 0 0 0 0 37516 2108 39423;39424;39425 198686;198687;198688 201960;201961;201962 201962 875;876 3 VSGLQGSDALNIQQNQTSGGSLQAGQQK SGSSGTNSQGQTPQRVSGLQGSDALNIQQN QNQTSGGSLQAGQQKEGEQNQQTQQQQILI R V S Q K E 2 0 2 1 0 7 0 5 0 1 3 1 0 0 0 4 1 0 0 1 0 0 28 0 2813.3904 P08047 P08047 359 386 SP1 Transcription factor Sp1 yes yes 3 2.9541E-73 183.25 By MS/MS By MS/MS By MS/MS By matching 1 2 3 1 1.0138 0.93451 29.359 7 Median 0.57732 0.54415 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2074 1.25 17.529 2 0 Median 1.0138 0.87868 10.4 3 1 Median 0.9037 0.93451 NaN 1 0 Median NaN NaN NaN 0 0 Median 94072000 41378000 52694000 4844100 3248000 1596100 0 0 0 78962000 33690000 45272000 6509100 2719300 3789900 3756800 1720800 2036100 0 0 0 37517 1897 39426 198689;198690;198691;198692;198693;198694;198695 201963;201964;201965;201966;201967;201968 201964 6 VSGPDLDLNLK GPGVDLPSVNLSMPKVSGPDLDLNLKGPSL SMPKVSGPDLDLNLKGPSLKGDLDASVPSM K V S L K G 0 0 1 2 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 11 0 1169.6292 Q09666 Q09666 5297 5307 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00017512 78.939 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 4 1 0.96277 0.95905 31.596 9 Median 0.88503 0.88672 NaN 1 0 Median 0.62137 0.55141 NaN 1 0 Median 0.95719 1.0433 2.2011 2 0 Median 1.0539 0.96662 3.756 4 0 Median 0.40475 0.42662 NaN 1 0 Median NaN NaN NaN 0 0 Median 61486000 31174000 30311000 11933000 6100200 5833200 2663600 1424100 1239500 27529000 13933000 13596000 16455000 7902500 8552300 2904700 1814600 1090100 0 0 0 37518 2749 39427 198696;198697;198698;198699;198700;198701;198702;198703;198704 201969;201970;201971;201972;201973;201974;201975;201976 201972 8 VSGPDLDLNLKGPSLK GPGVDLPSVNLSMPKVSGPDLDLNLKGPSL SGPDLDLNLKGPSLKGDLDASVPSMKVHAP K V S L K G 0 0 1 2 0 0 0 2 0 0 4 2 0 0 2 2 0 0 0 1 0 0 16 1 1651.9145 Q09666 Q09666 5297 5312 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 4.1918E-05 51.193 By MS/MS By matching By MS/MS By matching 4 1 3 2 0.79472 0.8183 24.103 10 Median 0.77292 0.79341 33.06 4 1 Median 0.71427 0.62639 NaN 1 0 Median 0.79743 0.91416 6.7432 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0125 0.87047 13.619 2 0 Median 43667000 25144000 18522000 23475000 13584000 9891300 855470 479690 375780 19068000 10951000 8116300 0 0 0 0 0 0 268720 129640 139080 37519 2749 39428 198705;198706;198707;198708;198709;198710;198711;198712;198713;198714 201977;201978;201979;201980;201981 201977 5 VSGPGVEPHGVLR TRVHVQPAVDTSGVKVSGPGVEPHGVLREV VKVSGPGVEPHGVLREVTTEFTVDARSLTA K V S L R E 0 1 0 0 0 0 1 3 1 0 1 0 0 0 2 1 0 0 0 3 0 0 13 0 1302.7044 Q14315 Q14315 1255 1267 FLNC Filamin-C yes yes 2;3 4.3111E-07 108.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 2 2 1 3 0.86226 0.75851 18.693 16 Median 0.9745 0.95192 13.279 4 0 Median 0.85398 0.69955 14.006 4 0 Median 0.8103 0.89204 17.054 2 0 Median 0.83312 0.72877 1.2928 2 0 Median 1.1421 1.1999 NaN 1 0 Median 0.86255 0.71465 11.944 3 0 Median 258270000 135940000 122340000 50470000 25824000 24646000 179240000 95426000 83817000 8419500 4046500 4372900 7273400 3978900 3294400 3443700 1698600 1745100 9421300 4960700 4460600 37520 2871 39429 198715;198716;198717;198718;198719;198720;198721;198722;198723;198724;198725;198726;198727;198728;198729;198730 201982;201983;201984;201985;201986;201987;201988;201989;201990;201991;201992;201993;201994;201995;201996;201997;201998;201999;202000;202001;202002;202003;202004;202005 201996 24 VSGQGLHEGHTFEPAEFIIDTR VVISQSEIGDASRVRVSGQGLHEGHTFEPA EGHTFEPAEFIIDTRDAGYGGLSLSIEGPS R V S T R D 1 1 0 1 0 1 3 3 2 2 1 0 0 2 1 1 2 0 0 1 0 0 22 0 2439.1819 P21333;H0Y5C6;Q60FE5 P21333 2052 2073 FLNA Filamin-A no no 2;3;4 1.1382E-26 136.34 By MS/MS By MS/MS By MS/MS By matching By matching 7 3 2 1 1 0.96395 0.96564 27.838 14 Median 1.0349 0.99998 11.288 7 1 Median 0.81695 0.65328 14.107 3 0 Median 1.0449 1.1472 8.7335 2 0 Median NaN NaN NaN 0 0 Median 1.0244 1.1636 NaN 1 0 Median 0.71234 0.60367 NaN 1 0 Median 263770000 126510000 137260000 206940000 98124000 108820000 40173000 21032000 19141000 14426000 6378000 8048200 0 0 0 2073400 883370 1190100 148650 91206 57444 37521 2088;3120 39430 198731;198732;198733;198734;198735;198736;198737;198738;198739;198740;198741;198742;198743;198744 202006;202007;202008;202009;202010;202011;202012;202013;202014;202015;202016 202007 10 VSGQVQALQNHYR LSARTFSRHVVQRQRVSGQVQALQNHYRKY QRVSGQVQALQNHYRKYLCLLASDAEVPEP R V S Y R K 1 1 1 0 0 3 0 1 1 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1498.7641 O00411 O00411 519 531 POLRMT DNA-directed RNA polymerase, mitochondrial yes yes 3 0.00026028 61.641 By MS/MS By MS/MS By matching 1 1 1 1.2475 1.0673 57.294 3 Median 0.80461 0.79904 NaN 1 0 Median 1.2475 1.0673 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.8239 2.4122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4890700 2546800 2343900 1788300 1130200 658070 2264100 1199200 1064900 0 0 0 838300 217300 621000 0 0 0 0 0 0 37522 1461 39431 198745;198746;198747 202017;202018 202018 2 VSGSELVQK LARAVAHHTDCTFIRVSGSELVQKFIGEGA DCTFIRVSGSELVQKFIGEGARMVRELFVM R V S Q K F 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 9 0 945.51311 P62195;J3QSA9;J3QQM1;J3KRP2;J3QLH6;J3QRR3 P62195 214 222 PSMC5 26S protease regulatory subunit 8 yes no 2 0.0021293 74.127 By MS/MS 2 1.1295 0.97046 2.7587 2 Median NaN NaN NaN 0 0 Median 1.1295 0.97046 2.7587 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5763600 2643300 3120300 0 0 0 5763600 2643300 3120300 0 0 0 0 0 0 0 0 0 0 0 0 37523 2572 39432 198748;198749 202019;202020;202021;202022 202020 4 VSGSINMLSLTQGLFR ITICRLIGIKDMYAKVSGSINMLSLTQGLF SGSINMLSLTQGLFRGLSRQETHQQLADKK K V S F R G 0 1 1 0 0 1 0 2 0 1 3 0 1 1 0 3 1 0 0 1 0 0 16 0 1721.9134 P82675 P82675 336 351 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 1.6609E-09 121.08 By MS/MS By MS/MS 1 1 0.92695 0.86089 55.606 2 Median 0.58334 0.58101 NaN 1 0 Median 1.473 1.2756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7217400 3578400 3639000 3473300 2167300 1305900 3744200 1411100 2333100 0 0 0 0 0 0 0 0 0 0 0 0 37524 2653 39433 198750;198751 202023;202024;202025;202026 202026 4 VSGSQIVDIDK IRAKYPDRVPVIVEKVSGSQIVDIDKRKYL IVEKVSGSQIVDIDKRKYLVPSDITVAQFM K V S D K R 0 0 0 2 0 1 0 1 0 2 0 1 0 0 0 2 0 0 0 2 0 0 11 0 1159.6085 P60520;H3BSM5 P60520 36 46 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2 0.0002117 98.943 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0601 0.92171 17.347 4 Median 1.0543 0.96756 NaN 1 0 Median 1.066 0.87804 NaN 1 0 Median 1.3006 1.251 NaN 1 0 Median 1.0492 0.85536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20898000 9298500 11600000 3976700 1758200 2218500 9615300 4487100 5128200 6251100 2544200 3707000 1055100 508990 546090 0 0 0 0 0 0 37525 2526 39434 198752;198753;198754;198755 202027;202028;202029;202030 202028 4 VSGSQIVDIDKR IRAKYPDRVPVIVEKVSGSQIVDIDKRKYL VEKVSGSQIVDIDKRKYLVPSDITVAQFMW K V S K R K 0 1 0 2 0 1 0 1 0 2 0 1 0 0 0 2 0 0 0 2 0 0 12 1 1315.7096 P60520;H3BSM5 P60520 36 47 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 2;3 0.00014535 133.91 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.1948 1.1767 16.414 7 Median 1.2743 1.2495 8.4948 2 0 Median 1.0953 0.96702 7.1224 2 0 Median 1.2154 1.2658 2.4175 2 0 Median 1.0959 0.89119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28214000 13067000 15147000 3766400 1670800 2095600 15174000 7530000 7644200 8456900 3447400 5009600 816500 419090 397410 0 0 0 0 0 0 37526 2526 39435 198756;198757;198758;198759;198760;198761;198762 202031;202032;202033;202034;202035;202036;202037;202038 202035 8 VSGSQIVDIDKRK IRAKYPDRVPVIVEKVSGSQIVDIDKRKYL EKVSGSQIVDIDKRKYLVPSDITVAQFMWI K V S R K Y 0 1 0 2 0 1 0 1 0 2 0 2 0 0 0 2 0 0 0 2 0 0 13 2 1443.8045 P60520;H3BSM5 P60520 36 48 GABARAPL2 Gamma-aminobutyric acid receptor-associated protein-like 2 yes no 3 0.00031983 61.375 By MS/MS By MS/MS By MS/MS 1 2 1 1.146 1.1356 28.545 4 Median 1.2594 1.3644 NaN 1 0 Median 0.98324 0.90936 5.4537 2 0 Median 1.4027 1.583 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13671000 6082600 7588500 3183100 1367400 1815700 7783800 3683700 4100100 2704200 1031500 1672700 0 0 0 0 0 0 0 0 0 37527 2526 39436 198763;198764;198765;198766 202039;202040;202041;202042;202043;202044 202044 6 VSGTLDTPEK QTSTKGQVLRKKKKKVSGTLDTPEKTVDSQ KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K V S E K T 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 10 0 1045.5292 Q9BYG3;C9J808;H7BZL0 Q9BYG3 217 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes no 2 0.0061873 49.418 By MS/MS 1 1.1875 0.99293 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1875 0.99293 NaN 1 0 Median 1322400 648260 674120 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1322400 648260 674120 37528 3891 39437 198767 202045;202046 202046 2 VSGVDGYETEGIR SKLSTPGARAETNSRVSGVDGYETEGIRGL SRVSGVDGYETEGIRGLRALGVRDLSYRLV R V S I R G 0 1 0 1 0 0 2 3 0 1 0 0 0 0 0 1 1 0 1 2 0 0 13 0 1380.6521 Q14566 Q14566 270 282 MCM6 DNA replication licensing factor MCM6 yes yes 2 9.4663E-52 190.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 0.86072 0.85553 95.641 7 Median 0.81732 0.78216 7.7798 2 0 Median 0.319 0.276 188.3 2 1 Median 0.87832 0.87541 3.2498 2 1 Median 1.2212 1.0524 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 235350000 132050000 103300000 78951000 42770000 36180000 92677000 54950000 37727000 59083000 32348000 26735000 4638000 1977800 2660200 0 0 0 0 0 0 37529 2881 39438 198768;198769;198770;198771;198772;198773;198774 202047;202048;202049;202050;202051;202052;202053;202054;202055 202051 9 VSHELGPSLR ITQPRRISAVSVAQRVSHELGPSLRRNVGF SVAQRVSHELGPSLRRNVGFQVRLESKPPS R V S L R R 0 1 0 0 0 0 1 1 1 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1093.588 H7BXY3;Q7L2E3 H7BXY3 475 484 DHX30 Putative ATP-dependent RNA helicase DHX30 yes no 2 0.0013144 66.621 By MS/MS By matching 2 1 0.67266 0.69121 79.493 3 Median NaN NaN NaN 0 0 Median 0.54903 0.48441 108.61 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67266 0.69121 NaN 1 0 Median NaN NaN NaN 0 0 Median 4968700 2585000 2383700 0 0 0 3737300 2028900 1708400 0 0 0 0 0 0 1231400 556120 675260 0 0 0 37530 1244 39439 198775;198776;198777 202056 202056 1 VSHIDVITAEMAK LESADKFYGVKFRNKVSHIDVITAEMAKDF NKVSHIDVITAEMAKDFVEDDTTHG_____ K V S A K D 2 0 0 1 0 0 1 0 1 2 0 1 1 0 0 1 1 0 0 2 0 0 13 0 1412.7334 Q9UQE7 Q9UQE7 1195 1207 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 5.2825E-07 122.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 2 4 5 1.0116 1.0643 28.188 12 Median NaN NaN NaN 0 0 Median 1.2846 1.13 NaN 1 0 Median 0.93073 0.99265 14.46 2 0 Median 1.3098 1.1235 4.2205 2 0 Median 0.96767 1.0131 3.5404 2 0 Median 0.91203 0.75832 40.901 5 0 Median 72708000 36313000 36394000 0 0 0 2045300 839480 1205800 36528000 18951000 17577000 6623200 2757400 3865800 24478000 12246000 12232000 3033700 1519400 1514300 37531 4362 39440 198778;198779;198780;198781;198782;198783;198784;198785;198786;198787;198788;198789;198790;198791 202057;202058;202059;202060;202061;202062;202063;202064;202065;202066;202067;202068;202069;202070;202071 202063 15 VSHIDVITAEMAKDFVEDDTTHG LESADKFYGVKFRNKVSHIDVITAEMAKDF AEMAKDFVEDDTTHG_______________ K V S H G - 2 0 0 4 0 0 2 1 2 2 0 1 1 1 0 1 3 0 0 3 0 0 23 1 2529.1693 Q9UQE7 Q9UQE7 1195 1217 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.069821 7.2761 By MS/MS 1 0.89966 0.97365 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89966 0.97365 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2935700 1660900 1274800 0 0 0 0 0 0 2935700 1660900 1274800 0 0 0 0 0 0 0 0 0 37532 4362 39441 198792 202072 202072 1 VSHKPSGLVMAR KISELGAGNGGVVFKVSHKPSGLVMARKLI VFKVSHKPSGLVMARKLIHLEIKPAIRNQI K V S A R K 1 1 0 0 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 2 0 0 12 1 1280.7023 Q02750 Q02750 85 96 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 yes yes 3 0.001768 40.767 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 2 0.98123 0.95824 40.621 8 Median 0.86854 0.92968 NaN 1 0 Median 0.93344 0.87827 NaN 1 0 Median 0.97065 1.0417 7.8204 2 0 Median 0.99096 0.87367 NaN 1 0 Median 2.7534 2.9666 NaN 1 0 Median 1.1275 1.0292 14.091 2 0 Median 16129000 7750300 8378700 1768800 950850 817970 6298400 3354900 2943400 4004200 2027100 1977200 557160 283940 273220 1625300 286280 1339000 1875100 847300 1027800 37533 2700 39442 198793;198794;198795;198796;198797;198798;198799;198800 202073;202074;202075;202076;202077;202078;202079;202080;202081 202078 9 VSHLLGINVTDFTR NTDQASMPDNTAAQKVSHLLGINVTDFTRG KVSHLLGINVTDFTRGILTPRIKVGRDYVQ K V S T R G 0 1 1 1 0 0 0 1 1 1 2 0 0 1 0 1 2 0 0 2 0 0 14 0 1570.8467 P35579 P35579 374 387 MYH9 Myosin-9 yes yes 2;3 3.0262E-07 132.76 By MS/MS By MS/MS By MS/MS By matching By MS/MS 6 7 2 1 3 1.1219 1.1074 16.65 18 Median 1.2528 1.1751 6.1176 5 0 Median 1.0928 0.93306 4.794 7 0 Median 0.9482 1.0592 9.1811 2 0 Median 1.4435 1.2635 NaN 1 0 Median 1.3199 1.4023 14.71 3 0 Median NaN NaN NaN 0 0 Median 328490000 150970000 177520000 128410000 55582000 72831000 161090000 77283000 83805000 14182000 6889200 7292700 347120 147220 199900 24459000 11068000 13391000 0 0 0 37534 2244 39443 198801;198802;198803;198804;198805;198806;198807;198808;198809;198810;198811;198812;198813;198814;198815;198816;198817;198818;198819 202082;202083;202084;202085;202086;202087;202088;202089;202090;202091;202092;202093;202094;202095;202096;202097;202098;202099;202100;202101;202102 202094 21 VSHQGYSTEAEFEEPR EKLRSINQGLDRLRRVSHQGYSTEAEFEEP SHQGYSTEAEFEEPRVIDLWDLAQSANLTD R V S P R V 1 1 0 0 0 1 4 1 1 0 0 0 0 1 1 2 1 0 1 1 0 0 16 0 1864.8228 P30533 P30533 241 256 LRPAP1 Alpha-2-macroglobulin receptor-associated protein yes yes 2;3 8.2415E-15 132.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 3 1.0596 1.0427 73.078 7 Median 1.0596 1.0548 NaN 1 0 Median 1.1955 1.0427 NaN 1 0 Median 1.0461 1.1412 13.983 2 0 Median 1.0368 0.86156 107.61 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98312000 49885000 48427000 9778300 4833000 4945300 12624000 5685000 6938800 42344000 19691000 22654000 33566000 19676000 13889000 0 0 0 0 0 0 37535 2196 39444 198820;198821;198822;198823;198824;198825;198826 202103;202104;202105;202106;202107;202108;202109;202110 202110 8 VSHSPALSSDVR IQGHQIIAVPDSGSKVSHSPALSSDVRSTN GSKVSHSPALSSDVRSTNGTAECKTVKRPA K V S V R S 1 1 0 1 0 0 0 0 1 0 1 0 0 0 1 4 0 0 0 2 0 0 12 0 1253.6364 Q68CP9;F8WCU9;F8W108;F8VWP4 Q68CP9 1493 1504 ARID2 AT-rich interactive domain-containing protein 2 yes no 2;3 0.00016879 66.267 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.0539 0.92161 18.957 6 Median NaN NaN NaN 0 0 Median 1.4323 1.2671 NaN 1 0 Median 0.69778 0.77548 2.2596 2 0 Median 1.0539 0.92161 3.7654 2 0 Median NaN NaN NaN 0 0 Median 1.2605 1.0571 NaN 1 0 Median 6282400 3418400 2864000 0 0 0 410750 169420 241330 4285100 2561400 1723600 720080 300050 420030 0 0 0 866480 387480 479000 37536 3122 39445 198827;198828;198829;198830;198831;198832 202111;202112;202113;202114;202115 202112 5 VSHVLAALQAGNR TKKELIECARRVSEKVSHVLAALQAGNRGT EKVSHVLAALQAGNRGTQACITAASAVSGI K V S N R G 3 1 1 0 0 1 0 1 1 0 2 0 0 0 0 1 0 0 0 2 0 0 13 0 1334.7419 Q9Y490 Q9Y490 1961 1973 TLN1 Talin-1 yes yes 2;3 7.918E-07 112.36 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 3 2 2 2 0.95068 0.89215 30.008 11 Median 0.93489 0.87729 2.3753 2 0 Median 1.2426 0.99205 2.1743 3 0 Median NaN NaN NaN 0 0 Median 1.3335 1.1729 48.433 2 0 Median 0.94703 0.99417 45.676 2 0 Median 0.7673 0.63089 14.838 2 0 Median 159990000 73724000 86267000 47450000 23153000 24297000 90672000 39634000 51038000 0 0 0 7651200 3673400 3977800 8913700 4363700 4549900 5304100 2900100 2404100 37537 4441 39446 198833;198834;198835;198836;198837;198838;198839;198840;198841;198842;198843 202116;202117;202118;202119;202120;202121;202122;202123;202124;202125;202126 202121 10 VSHVSTGGGASLELLEGK GDTATCCAKWNTEDKVSHVSTGGGASLELL VSTGGGASLELLEGKVLPGVDALSNI____ K V S G K V 1 0 0 0 0 0 2 4 1 0 3 1 0 0 0 3 1 0 0 2 0 0 18 0 1739.9054 P00558;P07205 P00558 389 406 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 2;3 2.7683E-41 210.91 By MS/MS By MS/MS By MS/MS By MS/MS 7 5 3 2 1.2067 1.0631 14.013 17 Median 1.0693 0.97774 14.711 7 1 Median 1.3169 1.1163 7.7005 5 0 Median 1.1032 1.0584 15.843 3 0 Median 1.1869 1.0339 24.166 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 397770000 185850000 211920000 220000000 104710000 115290000 40333000 16908000 23425000 122230000 57639000 64589000 15208000 6590200 8617500 0 0 0 0 0 0 37538 1824 39447 198844;198845;198846;198847;198848;198849;198850;198851;198852;198853;198854;198855;198856;198857;198858;198859;198860 202127;202128;202129;202130;202131;202132;202133;202134;202135;202136;202137;202138;202139;202140;202141;202142;202143;202144;202145;202146;202147;202148;202149;202150;202151 202135 25 VSHYIINSLPNR TCPGDYVLSVSENSRVSHYIINSLPNRRFK NSRVSHYIINSLPNRRFKIGDQEFDHLPAL R V S N R R 0 1 2 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1411.7572 P46109 P46109 58 69 CRKL Crk-like protein yes yes 3 0.0037696 35.523 By MS/MS By matching By matching By matching 2 2 1 2 0.96569 0.96949 30.411 6 Median 0.75571 0.72707 24.101 2 0 Median 1.0026 0.85271 34.743 2 0 Median 1.0719 1.2308 NaN 1 0 Median 1.3691 1.2144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21171000 11090000 10081000 13976000 7751300 6224600 3280300 1632500 1647800 2381800 1023800 1358000 1532600 681990 850580 0 0 0 0 0 0 37539 2341 39448 198861;198862;198863;198864;198865;198866;198867 202152 202152 1 VSHYIINSLPNRR TCPGDYVLSVSENSRVSHYIINSLPNRRFK SRVSHYIINSLPNRRFKIGDQEFDHLPALL R V S R R F 0 2 2 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 1 1 0 0 13 1 1567.8583 P46109 P46109 58 70 CRKL Crk-like protein yes yes 2;3 0.00019453 133.75 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.1063 1.1723 14.401 5 Median 0.93593 1.0076 21.412 2 0 Median 1.3517 1.2442 NaN 1 0 Median 1.1063 1.1547 NaN 1 0 Median 1.266 1.1815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47767000 22351000 25416000 33207000 16387000 16819000 4913000 2220200 2692800 7579000 2650400 4928700 2068500 1093100 975380 0 0 0 0 0 0 37540 2341 39449 198868;198869;198870;198871;198872 202153;202154;202155;202156 202154 4 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR TSPGDYVLSVSENSRVSHYIINSSGPRPPV PPSPAQPPPGVSPSRLRIGDQEFDSLPALL R V S S R L 1 2 1 0 0 1 0 2 1 2 0 0 0 0 10 6 0 0 1 3 0 0 30 1 3073.6098 P46108;I3L297 P46108 57 86 CRK Adapter molecule crk yes no 4 0.022816 20.845 By MS/MS 1 0.23606 0.25233 NaN 1 Median 0.23606 0.25233 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7536700 6807500 729160 7536700 6807500 729160 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37541 2340 39450 198873 202157 202157 1 VSIAELAQASNSLIAWGR EELAAVANFIRQRGRVSIAELAQASNSLIA AELAQASNSLIAWGRESPAQAPA_______ R V S G R E 4 1 1 0 0 1 1 1 0 2 2 0 0 0 0 3 0 1 0 1 0 0 18 0 1885.0058 Q96HY6 Q96HY6 289 306 DDRGK1 DDRGK domain-containing protein 1 yes yes 2 2.6894E-06 80.96 By MS/MS By matching 1 2 1.3178 1.1346 40.474 3 Median NaN NaN NaN 0 0 Median 1.3178 1.1346 NaN 1 0 Median 0.93585 0.99874 56.284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3006800 1328100 1678700 0 0 0 2498200 1067900 1430300 508560 260190 248370 0 0 0 0 0 0 0 0 0 37542 3672 39451 198874;198875;198876 202158;202159 202159 2 VSIHQMEMER HMEENLRRAKREDLKVSIHQMEMERIRYVL REDLKVSIHQMEMERIRYVLSSYLRCRLMK K V S E R I 0 1 0 0 0 1 2 0 1 1 0 0 2 0 0 1 0 0 0 1 0 0 10 0 1258.5798 Q9BRT9;E5RFF9;E5RH56 Q9BRT9 75 84 GINS4 DNA replication complex GINS protein SLD5;DNA replication complex GINS protein SLD5, N-terminally processed;DNA replication complex GINS protein SLD5 yes no 3 0.0039201 38.875 By MS/MS By MS/MS 1 1 1.2164 1.0901 11.914 2 Median 1.0598 1.002 NaN 1 0 Median 1.3962 1.1859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8453100 3814300 4638800 6657100 3048000 3609100 1796000 766290 1029700 0 0 0 0 0 0 0 0 0 0 0 0 37543 833 39452 198877;198878 202160;202161 202161 2 VSILAAIDEASK EDLRQGLLPVLESLKVSILAAIDEASKKLN SLKVSILAAIDEASKKLNAQ__________ K V S S K K 3 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1215.6711 CON__P15497 CON__P15497 249 260 yes yes 2 0.0028032 73.499 By MS/MS By MS/MS 1 1 0.069902 0.068098 34.377 2 Median 0.093497 0.086836 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.052262 0.053403 NaN 1 1 Median NaN NaN NaN 0 0 Median 45422000 41867000 3555400 19490000 17540000 1950200 0 0 0 0 0 0 0 0 0 25932000 24327000 1605200 0 0 0 + 37544 758 39453 198879;198880 202162;202163 202162 2 VSILAAIDEASKK EDLRQGLLPVLESLKVSILAAIDEASKKLN LKVSILAAIDEASKKLNAQ___________ K V S K K L 3 0 0 1 0 0 1 0 0 2 1 2 0 0 0 2 0 0 0 1 0 0 13 1 1343.766 CON__P15497 CON__P15497 249 261 yes yes 2;3 6.684E-05 100.72 By MS/MS By MS/MS By MS/MS 1 2 2 0.029423 0.031421 135.92 4 Median 0.17197 0.17479 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.0086758 0.0086654 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.029423 0.031421 99.164 2 2 Median NaN NaN NaN 0 0 Median 32441000 29552000 2888700 12571000 10144000 2427200 0 0 0 3867400 3698000 169400 0 0 0 16003000 15711000 292100 0 0 0 + 37545 758 39454 198881;198882;198883;198884;198885 202164;202165;202166;202167;202168 202168 5 VSILESLDKWER STLRKRKMYEEFLSKVSILESLDKWERLTV LSKVSILESLDKWERLTVADALEPVQFEDG K V S E R L 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 2 0 1 0 1 0 0 12 1 1473.7827 P10644;K7EM13;K7EPB2 P10644 253 264 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes no 2;3 0.0069889 52.49 By MS/MS By MS/MS By matching By matching By matching By matching 2 4 1 1 1 2 1.11 1.0841 31.74 11 Median 1.0238 1.0311 10.927 2 0 Median 1.2094 1.1167 2.6521 4 0 Median 1.7904 1.8145 NaN 1 0 Median 0.98079 0.94978 NaN 1 0 Median 1.0502 1.0841 NaN 1 0 Median 0.69774 0.64162 43.797 2 0 Median 13057000 5725500 7331600 4709600 2033400 2676100 5883600 2616300 3267300 816580 301170 515410 607630 217240 390390 328420 141280 187140 711360 416140 295230 37546 1945 39455 198886;198887;198888;198889;198890;198891;198892;198893;198894;198895;198896 202169;202170;202171 202171 3 VSIQFER LLEMLIQLPANSVTKVSIQFERALLKWTEY LPANSVTKVSIQFERALLKWTEYTPDPNHG K V S E R A 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 7 0 877.46577 Q969N2;A0A1W2PP53;A0A1W2PNP0;A0A1W2PQY1;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PQN1;A0A1W2PP57;A0A1W2PPR6;A0A1W2PPK4;A0A1W2PR92;A0A1W2PR73;A0A1W2PQA4;A0A1W2PR34 Q969N2 442 448 PIGT GPI transamidase component PIG-T yes no 2 0.007908 94.262 By MS/MS By MS/MS By matching 1 2 1 1.1592 1.0886 25.928 4 Median 1.1032 1.0666 NaN 1 1 Median 1.014 0.87361 39.046 2 0 Median NaN NaN NaN 0 0 Median 1.218 1.1109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12329000 5623300 6705800 5923800 3013200 2910700 5123400 2065800 3057600 0 0 0 1281800 544310 737490 0 0 0 0 0 0 37547 331 39456 198897;198898;198899;198900 202172;202173;202174 202172 3 VSISEGDDKIEYR TKNLVPGESVYGEKRVSISEGDDKIEYRAW KRVSISEGDDKIEYRAWNPFRSKLAAAILG R V S Y R A 0 1 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 13 1 1509.7311 P22087;M0QXL5;M0R0P1;M0R299;M0R2Q4;M0R2U2;M0R1H0;M0R2B0 P22087 123 135 FBL rRNA 2-O-methyltransferase fibrillarin yes no 2;3 1.3978E-07 123.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 2 6 6 1.1268 1.083 23.667 22 Median 0.93048 0.95785 78.225 2 0 Median 1.5775 1.4141 25.756 3 0 Median 1.0445 1.1143 8.3589 3 0 Plateau 1.3569 1.2231 16.947 2 0 Median 0.94591 0.98784 11.928 6 0 Median 1.2478 1.1041 8.6917 6 0 Median 456360000 218850000 237510000 7336300 3056000 4280300 10711000 4115000 6595800 226860000 110990000 115870000 31064000 12722000 18343000 133000000 67812000 65189000 47391000 20154000 27237000 37548 2097 39457 198901;198902;198903;198904;198905;198906;198907;198908;198909;198910;198911;198912;198913;198914;198915;198916;198917;198918;198919;198920;198921;198922 202175;202176;202177;202178;202179;202180;202181;202182;202183;202184;202185;202186;202187;202188;202189;202190;202191;202192;202193;202194;202195;202196;202197 202194 22 VSITEAMHR TGPVAGILDTETLEKVSITEAMHRNLVDNI TETLEKVSITEAMHRNLVDNITGQRLLEAQ K V S H R N 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 1 0 0 9 0 1042.523 Q15149;H0YDN1 Q15149 4429 4437 PLEC Plectin yes no 2 0.025154 52.482 By MS/MS 1 1.1903 1.3295 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1903 1.3295 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1843400 868020 975350 0 0 0 0 0 0 1843400 868020 975350 0 0 0 0 0 0 0 0 0 37549 2933 39458 198923 202198 202198 1 VSIVNHLEFLR VLDAESMHDCVSVVKVSIVNHLEFLRDEEL SVVKVSIVNHLEFLRDEELEERREKRRKQL K V S L R D 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 1 0 0 0 2 0 0 11 0 1325.7456 Q7Z6Z7 Q7Z6Z7 2672 2682 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 3 0.0036507 37.426 By MS/MS 1 1.0588 1.0736 NaN 1 Median 1.0588 1.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416800 1094300 1322600 2416800 1094300 1322600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37550 3253 39459 198924 202199 202199 1 VSIYEAMR SGCLAGIYLEDTKEKVSIYEAMRRGLLRAT LEDTKEKVSIYEAMRRGLLRATTAALLLEA K V S M R R 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 1 0 0 8 0 967.4797 Q15149;H0YDN1 Q15149 3506 3513 PLEC Plectin yes no 2 0.0025265 107.59 By MS/MS By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 2 1.3568 1.1452 13.42 7 Median 1.0649 1.0385 NaN 1 0 Median 1.4174 1.1452 NaN 1 0 Median 1.1987 1.2653 NaN 1 0 Median 1.2917 1.1244 NaN 1 0 Median 1.5025 1.5632 NaN 1 0 Median 1.4311 1.1887 9.0088 2 0 Median 47175000 20796000 26379000 15098000 7751100 7347200 12338000 5109500 7228900 10463000 4252300 6210400 1681100 642580 1038500 6189600 2472700 3716900 1404900 567880 837050 37551 2933 39460 198925;198926;198927;198928;198929;198930;198931 202200;202201;202202;202203;202204 202200 5 VSKNEEKPVQMMFK DEQFDKENTEERLFKVSKNEEKPVQMMFKQ KVSKNEEKPVQMMFKQSTFKKTYIGEIFTQ K V S F K Q 0 0 1 0 0 1 2 0 0 0 0 3 2 1 1 1 0 0 0 2 0 0 14 2 1693.8531 A0A024QZX5;A0A087X1N8;P35237;A0A2R8YD12;A0A2R8Y6A7 A0A024QZX5 193 206 SERPINB6 Serpin B6 yes no 3 0.068878 11.915 By MS/MS 1 0.63716 0.65335 NaN 1 Median 0.63716 0.65335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4767700 2747000 2020700 4767700 2747000 2020700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37552 1 39461 198932 202205 202205 1 VSKPSQLQAHTPASQQTPPLPPYASPR APAPAQPAPQPPPAKVSKPSQLQAHTPASQ ASQQTPPLPPYASPRSPPVQPHTPVTISLG K V S P R S 3 1 0 0 0 4 0 0 1 0 2 1 0 0 7 4 2 0 1 1 0 0 27 1 2882.5039 Q96ST3 Q96ST3 250 276 SIN3A Paired amphipathic helix protein Sin3a yes yes 4 7.7535E-09 45.07 By MS/MS 1 0.27121 0.30747 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.27121 0.30747 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14724000 11633000 3091000 0 0 0 0 0 0 14724000 11633000 3091000 0 0 0 0 0 0 0 0 0 37553 3737 39462 198933 202206;202207 202206 2 VSLAGACGVGGYGSR SVSRSGGGGGGGFGRVSLAGACGVGGYGSR VSLAGACGVGGYGSRSLYNLGGSKRISIST R V S S R S 2 1 0 0 1 0 0 5 0 0 1 0 0 0 0 2 0 0 1 2 0 0 15 0 1409.6721 CON__P13647;P13647;F8VV57 CON__P13647 49 63 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.2016E-08 106.01 By MS/MS By MS/MS By MS/MS 4 1 1 0.072356 0.066991 104.05 5 Median NaN NaN NaN 0 0 Median 0.080551 0.066991 129.03 3 3 Median 0.072356 0.077277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.024124 0.018801 NaN 1 1 Median 36084000 35135000 948400 0 0 0 24699000 24216000 483100 6157200 5784500 372680 0 0 0 0 0 0 5227400 5134700 92624 + 37554 757 39463 198934;198935;198936;198937;198938;198939 202208;202209;202210;202211;202212;202213 202212 6 VSLANLKPNPGSK GGGARALDLLRGLPRVSLANLKPNPGSKKP PRVSLANLKPNPGSKKPERRPRGRRRGRKC R V S S K K 1 0 2 0 0 0 0 1 0 0 2 2 0 0 2 2 0 0 0 1 0 0 13 1 1323.751 Q9P015;E5RHF4 Q9P015 22 34 MRPL15 39S ribosomal protein L15, mitochondrial yes no 2 6.3223E-06 115 By MS/MS By matching 1 1 0.73403 0.6864 0.84476 2 Median 0.70284 0.68231 NaN 1 0 Median 0.76661 0.69051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20962000 11505000 9456800 15747000 8737800 7009000 5214800 2767000 2447900 0 0 0 0 0 0 0 0 0 0 0 0 37555 4197 39464 198940;198941 202214 202214 1 VSLDPHAQVAVGILR IEFENLSPGSVIIFRVSLDPHAQVAVGILR VSLDPHAQVAVGILRNHLTQFSPHFKSGSL R V S L R N 2 1 0 1 0 1 0 1 1 1 2 0 0 0 1 1 0 0 0 3 0 0 15 0 1573.894 P35573 P35573 850 864 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 3 0.0053323 39.509 By MS/MS 1 0.71654 0.68397 NaN 1 Median 0.71654 0.68397 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5086400 2721900 2364500 5086400 2721900 2364500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37556 2243 39465 198942 202215 202215 1 VSLDVNHFAPDELTVK SSGVSEIRHTADRWRVSLDVNHFAPDELTV SLDVNHFAPDELTVKTKDGVVEITGKHEER R V S V K T 1 0 1 2 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 3 0 0 16 0 1782.9152 P04792;F8WE04 P04792 97 112 HSPB1 Heat shock protein beta-1 yes no 2;3 1.8553E-10 132.9 By MS/MS By matching By MS/MS By matching By MS/MS By matching 4 3 3 2 4 2 0.87693 0.80855 30.668 18 Median 0.87693 0.80855 17.013 4 1 Median 1.11 0.92832 2.6129 3 0 Plateau 0.53754 0.50403 12.374 3 0 Median 1.362 1.1243 0.79828 2 0 Median 0.57823 0.6049 4.9113 4 0 Median 1.1977 0.98598 24.637 2 0 Median 389520000 220890000 168630000 301590000 167900000 133690000 13512000 6381000 7131500 37999000 24335000 13664000 1783500 730370 1053200 34211000 21349000 12862000 426510 196680 229830 37557 1851 39466 198943;198944;198945;198946;198947;198948;198949;198950;198951;198952;198953;198954;198955;198956;198957;198958;198959;198960 202216;202217;202218;202219;202220;202221;202222;202223;202224;202225;202226;202227;202228 202227 13 VSLEDHSSQGTLVNNVR IHAELHAEPRGDDWRVSLEDHSSQGTLVNN LEDHSSQGTLVNNVRLPRGHRLELSDGDLL R V S V R L 0 1 2 1 0 1 1 1 1 0 2 0 0 0 0 3 1 0 0 3 0 0 17 0 1853.9232 A0A0G2JIJ7;D2IYK5;Q9Y242 A0A0G2JIJ7 71 87 TCF19 Transcription factor 19 yes no 3 0.002614 42.338 By MS/MS 1 1.5558 1.6949 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5558 1.6949 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10337000 3600300 6736500 0 0 0 0 0 0 10337000 3600300 6736500 0 0 0 0 0 0 0 0 0 37558 276 39467 198961 202229 202229 1 VSLEDLYNGK RNGRRRGEDMMHPLKVSLEDLYNGKTTKLQ MHPLKVSLEDLYNGKTTKLQLSKNVLCSAC K V S G K T 0 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1136.5714 O60884;A0A087WT48 O60884 122 131 DNAJA2 DnaJ homolog subfamily A member 2 yes no 2 0.00039551 79.474 By MS/MS By MS/MS By matching 1 1 1 1.2674 1.1396 29.5 3 Median 0.7421 0.69033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2674 1.1396 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3935 1.1612 NaN 1 0 Median 22426000 11861000 10564000 10245000 6427900 3817400 0 0 0 0 0 0 11790000 5314200 6475700 0 0 0 390300 119190 271110 37559 1637 39468 198962;198963;198964 202230;202231;202232 202232 3 VSLELHIER QLGVDYFDYCPELGRVSLELHIERIPLNTE CPELGRVSLELHIERIPLNTEQKALKVLRI R V S E R I 0 1 0 0 0 0 2 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1094.6084 Q9BW27;J3KT10;J3QL54;J3QLH0;F5H0W7;J3QLD4 Q9BW27 433 441 NUP85 Nuclear pore complex protein Nup85 yes no 2 0.020328 39.022 By matching By matching By MS/MS 1 2 2 0.9751 0.96108 3.1174 5 Median 0.92272 0.92815 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94922 0.95948 2.238 2 0 Median 1.2666 0.98378 3.3015 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20051000 9419800 10631000 2311200 1177900 1133300 0 0 0 11942000 5717200 6224500 5797800 2524700 3273100 0 0 0 0 0 0 37560 3861 39469 198965;198966;198967;198968;198969 202233 202233 1 VSLEPHQGPGTPESK IAEGTGITTRQQRKRVSLEPHQGPGTPESK VSLEPHQGPGTPESKKATSCFPRPMTPRDR R V S S K K 0 0 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 15 0 1561.7736 A0A087WY61;Q14980 Q14980 1990 2004 NUMA1 Nuclear mitotic apparatus protein 1 no no 2;3 6.7302E-05 71.344 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 5 4 4 6 0.60393 0.60057 26.585 20 Median NaN NaN NaN 0 0 Median 0.71052 0.63092 NaN 1 0 Median 0.48666 0.48553 16.024 5 0 Median 0.69398 0.5991 10.816 4 0 Median 0.49638 0.50509 13.372 4 0 Median 0.84231 0.70822 37.403 6 0 Median 95799000 60157000 35641000 0 0 0 3427300 2295600 1131600 41674000 26710000 14963000 9153700 5561800 3591900 30645000 19618000 11027000 10899000 5971400 4927500 37561 2905;77 39470 198970;198971;198972;198973;198974;198975;198976;198977;198978;198979;198980;198981;198982;198983;198984;198985;198986;198987;198988;198989 202234;202235;202236;202237;202238;202239;202240;202241;202242;202243;202244;202245;202246;202247;202248;202249;202250 202235 16 VSLEPHQGPGTPESKK IAEGTGITTRQQRKRVSLEPHQGPGTPESK SLEPHQGPGTPESKKATSCFPRPMTPRDRH R V S K K A 0 0 0 0 0 1 2 2 1 0 1 2 0 0 3 2 1 0 0 1 0 0 16 1 1689.8686 A0A087WY61;Q14980 Q14980 1990 2005 NUMA1 Nuclear mitotic apparatus protein 1 no no 3;4 0.051992 9.788 By MS/MS By matching 2 1 0.51505 0.5904 14.872 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54283 0.62229 7.4396 2 0 Median NaN NaN NaN 0 0 Median 0.46802 0.48905 NaN 1 0 Median NaN NaN NaN 0 0 Median 3856100 2421800 1434200 0 0 0 0 0 0 2701000 1686500 1014500 0 0 0 1155100 735300 419770 0 0 0 37562 2905;77 39471 198990;198991;198992 202251;202252 202252 2 VSLERLDLDLTADSQPPVFK SGEGEVSGLMRKVPRVSLERLDLDLTADSQ LDLDLTADSQPPVFKVFPGSTTEDYNLIVI R V S F K V 1 1 0 3 0 1 1 0 0 0 4 1 0 1 2 2 1 0 0 2 0 0 20 1 2242.1845 Q13263;M0R0K9 Q13263 488 507 TRIM28 Transcription intermediary factor 1-beta yes no 3 0.0096127 22.221 By MS/MS 1 0.68164 0.70493 NaN 1 Median 0.68164 0.70493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1052200 580110 472140 1052200 580110 472140 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37563 2802 39472 198993 202253 202253 1 VSLLGPVTTPEHQLLK ENSNAFSTPQTPDIKVSLLGPVTTPEHQLL SLLGPVTTPEHQLLKTPSSSSLSQRVRSTL K V S L K T 0 0 0 0 0 1 1 1 1 0 4 1 0 0 2 1 2 0 0 2 0 0 16 0 1730.9931 Q9H0H5 Q9H0H5 572 587 RACGAP1 Rac GTPase-activating protein 1 yes yes 3 0.068521 16.494 By MS/MS 1 0.72424 0.74185 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72424 0.74185 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8828300 5235200 3593100 0 0 0 0 0 0 8828300 5235200 3593100 0 0 0 0 0 0 0 0 0 37564 3926 39473 198994 202254 202254 1 VSLLNEQFLPLIR EYISYSSQEEMDSNKVSLLNEQFLPLIRLL NKVSLLNEQFLPLIRLLESKYPRTLDVVLE K V S I R L 0 1 1 0 0 1 1 0 0 1 4 0 0 1 1 1 0 0 0 1 0 0 13 0 1540.8977 Q9H583;Q5T3Q7 Q9H583 418 430 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00078326 65.347 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 1 1.0814 1.0829 15.728 7 Median 1.5855 1.5572 NaN 1 0 Median 1.2812 1.1055 NaN 1 0 Median 1.0475 1.1619 NaN 1 0 Median 1.2293 1.0829 NaN 1 0 Median 1.0007 1.0371 1.8668 2 0 Median 1.0814 0.9563 NaN 1 0 Median 6582800 3183500 3399300 343810 129240 214580 704350 343830 360520 3232700 1621000 1611700 728370 325750 402620 1495700 731080 764650 77765 32606 45159 37565 3086 39474 198995;198996;198997;198998;198999;199000;199001 202255;202256;202257;202258;202259;202260 202259 6 VSLLQGDLSEK EIDNYKKDLKDLKEKVSLLQGDLSEKEASL LKEKVSLLQGDLSEKEASLLDLKEHASSLA K V S E K E 0 0 0 1 0 1 1 1 0 0 3 1 0 0 0 2 0 0 0 1 0 0 11 0 1187.6398 X6RLX0;Q8IUD2;G8JLD3;X6RM00 X6RLX0 661 671 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 2 0.00017615 86.898 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37566 3311 39475 199002 202261 202261 1 VSLQVHPDR RREASDGEVRRGYHKVSLQVHPDRVGEGDK RRGYHKVSLQVHPDRVGEGDKEDATRRFQI K V S D R V 0 1 0 1 0 1 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 1049.5618 Q8WXX5 Q8WXX5 38 46 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.00065712 106.6 By matching By MS/MS 1 1 0.85321 0.77469 3.3818 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80282 0.79344 NaN 1 0 Median 0.90677 0.75638 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9637900 5109400 4528600 0 0 0 0 0 0 3630200 1928500 1701700 6007700 3180800 2826900 0 0 0 0 0 0 37567 3522 39476 199003;199004 202262;202263 202262 2 VSLQVHPDRVGEGDKEDATR RREASDGEVRRGYHKVSLQVHPDRVGEGDK HPDRVGEGDKEDATRRFQILGKVYSVLSDR K V S T R R 1 2 0 3 0 1 2 2 1 0 1 1 0 0 1 1 1 0 0 3 0 0 20 2 2207.0931 Q8WXX5 Q8WXX5 38 57 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 4;5 0.00012801 36.805 By MS/MS 2 0.93475 0.95621 9.4239 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93475 0.95621 9.4239 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5050700 2327100 2723600 0 0 0 0 0 0 0 0 0 5050700 2327100 2723600 0 0 0 0 0 0 37568 3522 39477 199005;199006 202264;202265;202266 202264 3 VSMPDVDLNLK GSKFKMPKLNIKAPKVSMPDVDLNLKGPKL KAPKVSMPDVDLNLKGPKLKGEIDASVPEL K V S L K G 0 0 1 2 0 0 0 0 0 0 2 1 1 0 1 1 0 0 0 2 0 0 11 0 1229.6326 Q09666 Q09666 1781 1791 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0018201 56.916 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 2 1 1.1368 1.1084 20.411 7 Median 1.1077 1.1084 NaN 1 0 Median 1.1766 1.2086 27.136 2 0 Median 1.145 1.2248 NaN 1 0 Median 1.0385 0.97018 6.0496 2 0 Median 1.5258 1.5934 NaN 1 0 Median NaN NaN NaN 0 0 Median 29993000 12938000 17055000 8969000 3823200 5145800 7683000 3460900 4222100 9700900 3896500 5804500 2665800 1255000 1410800 974360 502470 471890 0 0 0 37569 2749 39478 199007;199008;199009;199010;199011;199012;199013 202267;202268;202269;202270 202269 4 VSMPDVDLNLKGPK GSKFKMPKLNIKAPKVSMPDVDLNLKGPKL KVSMPDVDLNLKGPKLKGEIDASVPELEGD K V S P K L 0 0 1 2 0 0 0 1 0 0 2 2 1 0 2 1 0 0 0 2 0 0 14 1 1511.8018 Q09666 Q09666 1781 1794 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00015844 93.058 By MS/MS By matching By MS/MS 3 1 3 0.86762 0.98406 28.359 6 Median 0.66296 0.7219 42.038 3 2 Median 1.1719 1.1142 NaN 1 0 Median 0.86762 0.98406 0.34164 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99260000 49059000 50201000 79200000 38568000 40632000 2312200 1205700 1106500 17747000 9285000 8461900 0 0 0 0 0 0 0 0 0 37570 2749 39479;39480 199014;199015;199016;199017;199018;199019;199020 202271;202272;202273;202274;202275;202276;202277 202272 1473 7 VSMPDVELNLK GSKFKMPFLSISSPKVSMPDVELNLKSPKV SSPKVSMPDVELNLKSPKVKGDLDIAGPNL K V S L K S 0 0 1 1 0 0 1 0 0 0 2 1 1 0 1 1 0 0 0 2 0 0 11 0 1243.6482 Q09666 Q09666 3415 3425 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00046956 105.52 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 0.88698 0.90642 19.074 7 Median 0.99708 0.97602 24.237 2 1 Median 1.0368 0.90642 NaN 1 1 Median 0.717 0.76485 30.312 2 2 Median 0.89502 0.87473 7.9851 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105380000 61432000 43948000 37455000 19937000 17518000 5824800 2771600 3053200 53031000 34202000 18829000 9067400 4520400 4547000 0 0 0 0 0 0 37571 2749 39481;39482 199021;199022;199023;199024;199025;199026;199027;199028;199029 202278;202279;202280;202281;202282;202283;202284;202285 202278 1474 8 VSMSPVLHTQNK TIIVAVKVSPVSYLRVSMSPVLHTQNKEAL YLRVSMSPVLHTQNKEALVAVPLGMTVTFT R V S N K E 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 2 1 0 0 2 0 0 12 0 1339.6918 Q8TEM1 Q8TEM1 1379 1390 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 1.2836E-06 102.4 By MS/MS By MS/MS 4 2 0.81209 0.88306 16.779 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81209 0.88306 11.428 4 0 Median 0.99822 0.90128 31.832 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43514000 23091000 20423000 0 0 0 0 0 0 36198000 19888000 16309000 7316300 3202400 4114000 0 0 0 0 0 0 37572 3477 39483 199030;199031;199032;199033;199034;199035 202286;202287;202288;202289;202290;202291;202292;202293;202294;202295;202296 202289 11 VSMSSQNDGFFAVHLK SGQIKSEVPLVDVTKVSMSSQNDGFFAVHL SMSSQNDGFFAVHLKEGSEAASKGDFLFSS K V S L K E 1 0 1 1 0 1 0 1 1 0 1 1 1 2 0 3 0 0 0 2 0 0 16 0 1765.8458 E9PDF6;O43795;H7C2Y7 E9PDF6 1008 1023 MYO1B Unconventional myosin-Ib yes no 3 0.055791 10.281 By MS/MS 1 1.0244 1.1086 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0244 1.1086 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2912300 1345500 1566800 0 0 0 0 0 0 2912300 1345500 1566800 0 0 0 0 0 0 0 0 0 37573 914 39484 199036 202297 202297 1 VSMVGQVK WSVKSGQIRNLESARVSMVGQVKQCEGITS RNLESARVSMVGQVKQCEGITSPEGSKSIV R V S V K Q 0 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 3 0 0 8 0 846.46332 Q9Y570 Q9Y570 229 236 PPME1 Protein phosphatase methylesterase 1 yes yes 2 0.005531 75.243 By MS/MS By matching 1 1 0.77671 0.70719 41.403 2 Median NaN NaN NaN 0 0 Median 1.1103 0.94773 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54337 0.5277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7382200 3177100 4205100 0 0 0 7025100 2945200 4079900 0 0 0 357130 231900 125230 0 0 0 0 0 0 37574 4453 39485 199037;199038 202298;202299 202299 2 VSNFKPGVYAVSVTGR AMMSPEDSWVSKWQRVSNFKPGVYAVSVTG SNFKPGVYAVSVTGRLPQGIVRELKSRGVA R V S G R L 1 1 1 0 0 0 0 2 0 0 0 1 0 1 1 2 1 0 1 4 0 0 16 1 1679.8995 D3DTZ5;J3QSB9;P63272 D3DTZ5 36 51 SUPT4H1 Transcription elongation factor SPT4 yes no 2;3 2.526E-10 103.39 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 0.9007 0.92853 30.602 8 Median 1.0004 0.981 3.7591 2 0 Median 1.0907 0.96298 1.6537 2 0 Median 0.79039 0.81666 7.7731 2 0 Median NaN NaN NaN 0 0 Median 0.79816 0.90585 NaN 1 0 Median 0.50501 0.39808 NaN 1 0 Median 271550000 135810000 135740000 97165000 48752000 48413000 95440000 44442000 50998000 69861000 39104000 30757000 0 0 0 8982800 3454800 5528000 99829 53385 46443 37575 797 39486 199039;199040;199041;199042;199043;199044;199045;199046 202300;202301;202302;202303;202304;202305;202306;202307;202308;202309;202310;202311;202312 202310 13 VSNLEELPLNEYR EILLRKGVQLLLSERVSNLEELPLNEYREY ERVSNLEELPLNEYREYIKVQTDKGTEVAT R V S Y R E 0 1 2 0 0 0 3 0 0 0 3 0 0 0 1 1 0 0 1 1 0 0 13 0 1574.794 Q9BRQ8 Q9BRQ8 209 221 AIFM2 Apoptosis-inducing factor 2 yes yes 2 0.0012129 57.492 By matching By MS/MS By matching 1 1 1 0.71809 0.65998 129.03 3 Median NaN NaN NaN 0 0 Median 0.084873 0.077224 NaN 1 0 Median 0.71809 0.78158 NaN 1 0 Median 0.77849 0.65998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2934900 1882500 1052400 0 0 0 621810 594640 27168 2155400 1197500 957940 157630 90335 67298 0 0 0 0 0 0 37576 3800 39487 199047;199048;199049 202313;202314 202314 2 VSNQVAVNMYK ISERKGGFFVDLFVRVSNQVAVNMYKQLGY LFVRVSNQVAVNMYKQLGYSVYRTVIEYYS R V S Y K Q 1 0 2 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 3 0 0 11 0 1251.6282 A8MZB2;P61599 A8MZB2 102 112 NAA20 N-alpha-acetyltransferase 20 yes no 2 0.00059752 66.435 By MS/MS 1 1.0119 0.86927 NaN 1 Median NaN NaN NaN 0 0 Median 1.0119 0.86927 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3665900 2267700 1398200 0 0 0 3665900 2267700 1398200 0 0 0 0 0 0 0 0 0 0 0 0 37577 550 39488 199050 202315;202316 202315 2 VSNTLESR IAGGVEIYNGDRKIKVSNTLESRLDLIAQQ NGDRKIKVSNTLESRLDLIAQQMMPEVRGA K V S S R L 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 8 0 904.46141 P36543;C9J8H1;Q96A05 P36543 192 199 ATP6V1E1;ATP6V1E2 V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2 yes no 2 0.066471 31.229 By MS/MS By matching 1 1 1.5741 1.4327 7.7502 2 Median 1.4137 1.3563 NaN 1 0 Median 1.7527 1.5134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 627920 240570 387350 431430 182560 248870 196500 58015 138480 0 0 0 0 0 0 0 0 0 0 0 0 37578 2258 39489 199051;199052 202317 202317 1 VSPDMAIFITMNPGYAGR TSAPITCELLNKQVKVSPDMAIFITMNPGY DMAIFITMNPGYAGRSNLPDNLKKLFRSLA K V S G R S 2 1 1 1 0 0 0 2 0 2 0 0 2 1 2 1 1 0 1 1 0 0 18 0 1938.9332 Q14204;A0A2R8YFZ7 Q14204 2008 2025 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 5.0267E-06 63.727 By MS/MS 2 0.7782 0.78544 13.402 2 Median 0.7782 0.78544 13.402 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7008000 4066000 2942000 7008000 4066000 2942000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37579 2865 39490 199053;199054 202318;202319;202320 202319 3 VSPDYNWFR ______________________________ ______________________________ K V S F R G 0 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 9 0 1182.5458 H0YML6;H0YLD7;H0YLW1;H0YLT5;H0YKM6;H0YMB7;H0YKB0;Q9NZD8 H0YML6 6 14 SPG21 Maspardin yes no 2 0.0021293 74.127 By MS/MS By matching 1 1 1.063 0.963 12.954 2 Median 0.92209 0.8787 NaN 1 0 Median 1.2255 1.0554 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4490800 2410500 2080300 4051800 2196100 1855700 438980 214330 224650 0 0 0 0 0 0 0 0 0 0 0 0 37580 1189 39491 199055;199056 202321 202321 1 VSPEEAIK RVDKEKGYIDLSKRRVSPEEAIKCEDKFTK IDLSKRRVSPEEAIKCEDKFTKSKTVYSIL R V S I K C 1 0 0 0 0 0 2 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 8 0 871.4651 P05198;G3V4T5;H0YJS4 P05198 90 97 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 0.011544 56.721 By MS/MS 1 1.3966 1.177 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3966 1.177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2890900 759340 2131600 0 0 0 0 0 0 0 0 0 2890900 759340 2131600 0 0 0 0 0 0 37581 1862 39492 199057 202322 202322 1 VSPEEVTIYNHPGIQAELR PLSASIELILVEDVRVSPEEVTIYNHPGIQ EVTIYNHPGIQAELRIREGSGYFFLNTSTA R V S L R I 1 1 1 0 0 1 3 1 1 2 1 0 0 0 2 1 1 0 1 2 0 0 19 0 2151.096 Q8TEM1 Q8TEM1 897 915 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2;3 1.1613E-18 113.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 1 0.60567 0.65018 24.121 11 Median 0.71622 0.68606 30.925 2 1 Median 1.0537 0.8733 10.932 2 0 Median 0.58375 0.64329 3.8776 4 0 Linear 1.1439 0.9939 14.173 2 0 Median 0.51762 0.54266 NaN 1 1 Median NaN NaN NaN 0 0 Median 231170000 134950000 96217000 27966000 15052000 12914000 10024000 4365800 5657800 187440000 112170000 75272000 1497600 744960 752670 4238800 2618300 1620600 0 0 0 37582 3477 39493 199058;199059;199060;199061;199062;199063;199064;199065;199066;199067;199068 202323;202324;202325;202326;202327;202328;202329;202330;202331;202332;202333;202334;202335;202336 202330 14 VSPESNEDISTTVVYR SLQQELALKETVWKKVSPESNEDISTTVVY SPESNEDISTTVVYRMESLGEKS_______ K V S Y R M 0 1 1 1 0 0 2 0 0 1 0 0 0 0 1 3 2 0 1 3 0 0 16 0 1794.8636 B8ZZA8;B8ZZC5 B8ZZA8 146 161 GLS yes no 2 3.941E-08 140.31 By MS/MS By matching By matching 2 1 1 0.9448 0.92432 23.807 4 Median 0.9448 0.92432 4.193 2 0 Median 1.1508 0.9998 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67918 0.59429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12576000 5943100 6632800 10756000 5053800 5702600 1510600 693950 816650 0 0 0 308850 195360 113490 0 0 0 0 0 0 37583 645 39494 199069;199070;199071;199072 202337;202338 202337 2 VSPIQIDGAGR CLSHHVADAYTSSQKVSPIQIDGAGRTWQD SSQKVSPIQIDGAGRTWQDSDTVKLLVDLE K V S G R T 1 1 0 1 0 1 0 2 0 2 0 0 0 0 1 1 0 0 0 1 0 0 11 0 1111.5986 Q8NFQ8 Q8NFQ8 325 335 TOR1AIP2 Torsin-1A-interacting protein 2 yes yes 2 0.0053296 66.962 By MS/MS By MS/MS 1 2 1.2374 1.016 4.7077 3 Plateau 1.0607 1.016 NaN 1 1 Median 1.1805 1.0213 6.6439 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28649000 13159000 15491000 8122300 3564000 4558400 20527000 9594800 10932000 0 0 0 0 0 0 0 0 0 0 0 0 37584 3440 39495 199073;199074;199075 202339;202340;202341 202339 3 VSPPEGAETR DEDEEEDYEQWLEIKVSPPEGAETRKVIEK WLEIKVSPPEGAETRKVIEKLARFVAEGGP K V S T R K 1 1 0 0 0 0 2 1 0 0 0 0 0 0 2 1 1 0 0 1 0 0 10 0 1041.5091 Q8IWZ8;V9GZ08 Q8IWZ8 180 189 SUGP1 SURP and G-patch domain-containing protein 1 yes no 2 0.04531 29.473 By MS/MS 1 0.8138 0.85272 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8138 0.85272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1202200 734220 468000 0 0 0 0 0 0 1202200 734220 468000 0 0 0 0 0 0 0 0 0 37585 3330 39496 199076 202342 202342 1 VSPSDTTPLVSR VVARSRPTPQDYEMRVSPSDTTPLVSRSVP EMRVSPSDTTPLVSRSVPPVKLEDEDDSDS R V S S R S 0 1 0 1 0 0 0 0 0 0 1 0 0 0 2 3 2 0 0 2 0 0 12 0 1257.6565 Q9HCK8;H0YJG4 Q9HCK8 2045 2056 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 0.063037 41.283 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37586 4030 39497 199077 202343 202343 1 VSPSFSAELK RAKLDQQTLRNLLSKVSPSFSAELKQLNQQ NLLSKVSPSFSAELKQLNQQYEKLFHKWML K V S L K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 0 0 10 0 1063.555 Q13416 Q13416 279 288 ORC2 Origin recognition complex subunit 2 yes yes 2 0.0042827 53.756 By MS/MS 1 1.0056 1.0078 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0056 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18810000 9928900 8880800 0 0 0 0 0 0 18810000 9928900 8880800 0 0 0 0 0 0 0 0 0 37587 2813 39498 199078 202344 202344 1 VSPSTSYTPSR STWVKEAYVNANQARVSPSTSYTPSRHKRS NQARVSPSTSYTPSRHKRSYEDDDDMDLQP R V S S R H 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 4 2 0 1 1 0 0 11 0 1180.5724 Q9BTE3 Q9BTE3 153 163 MCMBP Mini-chromosome maintenance complex-binding protein yes yes 2 0.0031943 50.292 By MS/MS By MS/MS 1 1 0.78737 0.73485 10.231 2 Median 0.78615 0.78998 NaN 1 0 Median 0.7886 0.68356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4905900 2710900 2194900 2361500 1357600 1003900 2544400 1353300 1191000 0 0 0 0 0 0 0 0 0 0 0 0 37588 3825 39499 199079;199080 202345;202346;202347 202346 3 VSPTNMQGFTK MCRFHSEDYIDFLQRVSPTNMQGFTKSLNA FLQRVSPTNMQGFTKSLNAFNVGDDCPVFP R V S T K S 0 0 1 0 0 1 0 1 0 0 0 1 1 1 1 1 2 0 0 1 0 0 11 0 1208.586 O15379 O15379 73 83 HDAC3 Histone deacetylase 3 yes yes 2 0.0087483 39.917 By matching By MS/MS 1 1 0.7702 0.75323 68.773 2 Median 1.2627 1.225 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4698 0.46316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5754400 3355500 2399000 773160 307990 465180 0 0 0 4981300 3047500 1933800 0 0 0 0 0 0 0 0 0 37589 1541 39500 199081;199082 202348 202348 1 VSPVSYLR QEPFGANQTIIVAVKVSPVSYLRVSMSPVL TIIVAVKVSPVSYLRVSMSPVLHTQNKEAL K V S L R V 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 1 2 0 0 8 0 919.51272 Q8TEM1 Q8TEM1 1371 1378 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00042532 154.01 By matching By matching By MS/MS By MS/MS By matching By matching 2 5 2 2 1 3 1.1875 1.0062 13.987 15 Median 1.0098 1.0024 11.3 2 0 Median 1.1873 0.96524 9.0366 5 0 Median 0.78915 0.84384 8.5811 2 0 Median 1.303 1.1392 13.764 2 0 Median 1.2319 1.277 NaN 1 0 Median 1.4184 1.1818 10.168 3 0 Median 83860000 41223000 42637000 9860900 4587400 5273400 15218000 6489900 8728100 38619000 21610000 17009000 3646400 1555200 2091300 5602600 2438200 3164500 10913000 4542400 6370400 37590 3477 39501 199083;199084;199085;199086;199087;199088;199089;199090;199091;199092;199093;199094;199095;199096;199097 202349;202350;202351;202352 202349 4 VSQFLQVLETDLYR TVNESAIFHGWVLQKVSQFLQVLETDLYRG KVSQFLQVLETDLYRGIGGHLDSLLGQCMY K V S Y R G 0 1 0 1 0 2 1 0 0 0 3 0 0 1 0 1 1 0 1 2 0 0 14 0 1709.8988 H3BQV3;B4DYU2;Q96MW5 H3BQV3 323 336 COG8 Conserved oligomeric Golgi complex subunit 8 yes no 2 0.00078971 60.434 By MS/MS By matching 1 1 1.1205 0.94656 26.28 2 Median NaN NaN NaN 0 0 Median 1.3136 1.1399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95582 0.78604 NaN 1 0 Median 3694300 1554200 2140100 0 0 0 3639900 1527900 2112000 0 0 0 0 0 0 0 0 0 54388 26285 28103 37591 610 39502 199098;199099 202353;202354 202354 2 VSQGQLVVMQPEK KFHHTFSTEIAKFLKVSQGQLVVMQPEKFQ LKVSQGQLVVMQPEKFQSKYEPRSHMMDVQ K V S E K F 0 0 0 0 0 3 1 1 0 0 1 1 1 0 1 1 0 0 0 3 0 0 13 0 1441.7599 P13667;A0A499FI48 P13667 350 362 PDIA4 Protein disulfide-isomerase A4 yes no 2 7.8025E-06 96.946 By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 1.0643 0.92906 17.537 10 Median 0.89151 0.80972 6.5024 2 0 Median 1.2982 1.1114 16.468 4 0 Median 0.86236 0.88795 2.8692 2 0 Median 1.2358 1.0722 16.74 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107510000 54128000 53382000 55668000 28429000 27239000 17565000 7916600 9648400 28996000 15416000 13581000 5281000 2366600 2914400 0 0 0 0 0 0 37592 1993 39503;39504 199100;199101;199102;199103;199104;199105;199106;199107;199108;199109 202355;202356;202357;202358;202359;202360;202361;202362;202363;202364;202365;202366;202367;202368 202361 783 14 VSQGSKDPAEGDGAQPEETPR NARGLLEFEHQRAPRVSQGSKDPAEGDGAQ DPAEGDGAQPEETPRDGDKPEETQGKAEKD R V S P R D 2 1 0 2 0 2 3 3 0 0 0 1 0 0 3 2 1 0 0 1 0 0 21 1 2153.9825 Q14697;F5H6X6 Q14697 186 206 GANAB Neutral alpha-glucosidase AB yes no 3 6.67E-13 84.499 By MS/MS By MS/MS 2 2 0.55246 0.56334 17.94 4 Median 0.46591 0.47937 11.618 2 0 Median 0.6625 0.63564 5.868 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30246000 17869000 12377000 6483100 4206800 2276300 23762000 13662000 10101000 0 0 0 0 0 0 0 0 0 0 0 0 37593 2896 39505 199110;199111;199112;199113 202369;202370;202371;202372;202373;202374 202371 6 VSQLDIQIK SVNELNSQLNESKEKVSQLDIQIKAKTELL NESKEKVSQLDIQIKAKTELLLSAEAAKTA K V S I K A 0 0 0 1 0 2 0 0 0 2 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1042.6023 Q15075 Q15075 637 645 EEA1 Early endosome antigen 1 yes yes 2 0.012856 45.972 By MS/MS By MS/MS By matching By matching 1 1 1 4 0.84639 0.90655 21.865 7 Median 0.97084 0.94011 NaN 1 0 Median 1.1751 1.0417 NaN 1 0 Median 0.79184 0.83192 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.70907 0.75791 24.39 4 0 Median NaN NaN NaN 0 0 Median 78525000 38609000 39915000 9396300 4460100 4936200 6393000 3049900 3343100 1686600 788200 898350 0 0 0 61049000 30311000 30738000 0 0 0 37594 2926 39506 199114;199115;199116;199117;199118;199119;199120 202375;202376 202375 2 VSQLLAVTGK FEDRDRSHREEMEVRVSQLLAVTGKKTTRP EMEVRVSQLLAVTGKKTTRP__________ R V S G K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1014.6073 Q13951;J3KS23 Q13951 168 177 CBFB Core-binding factor subunit beta yes no 2 0.0049875 51.268 By MS/MS By matching By MS/MS By matching By matching 1 1 2 1 2 0.99867 0.90385 29.329 7 Median 1.438 1.3376 NaN 1 0 Median 1.1057 0.94422 NaN 1 0 Median 1.0629 1.0682 23.632 2 0 Median 0.99867 0.82371 NaN 1 0 Median 0.60887 0.64126 6.8179 2 0 Median NaN NaN NaN 0 0 Median 16190000 7640500 8549700 4805600 1730500 3075000 1192400 539660 652710 7103700 3613200 3490600 659350 318790 340560 2429200 1438300 990880 0 0 0 37595 2848 39507 199121;199122;199123;199124;199125;199126;199127 202377;202378 202377 2 VSQLMEWTNK SASAQRKKEMVLSEKVSQLMEWTNKRPVIR VLSEKVSQLMEWTNKRPVIRMNGDKFRRLV K V S N K R 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 1 1 1 0 1 0 0 10 0 1234.6016 A0A087WU53;Q9H0U3 A0A087WU53 73 82 MAGT1 Magnesium transporter protein 1 yes no 2 0.00041009 109.66 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2172 1.0811 47.146 5 Median 1.2453 1.2481 NaN 1 0 Median 1.8112 1.5983 55.293 2 1 Median 0.98571 1.0545 NaN 1 0 Median 0.7442 0.63479 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37331000 18184000 19148000 12946000 6300500 6645200 14685000 6877000 7808000 9358700 4782900 4575800 341720 223090 118630 0 0 0 0 0 0 37596 24 39508 199128;199129;199130;199131;199132 202379;202380;202381;202382 202381 4 VSQLMEWTNKRPVIR SASAQRKKEMVLSEKVSQLMEWTNKRPVIR VSQLMEWTNKRPVIRMNGDKFRRLVKAPPR K V S I R M 0 2 1 0 0 1 1 0 0 1 1 1 1 0 1 1 1 1 0 2 0 0 15 2 1856.0091 A0A087WU53;Q9H0U3 A0A087WU53 73 87 MAGT1 Magnesium transporter protein 1 yes no 4 0.058907 16.886 By MS/MS 1 0.90179 0.86995 NaN 1 Median 0.90179 0.86995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4575900 2243700 2332200 4575900 2243700 2332200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37597 24 39509 199133 202383 202383 0 VSQLQER DPQVMLAPLISIALKVSQLQERTGRTAPTV PLISIALKVSQLQERTGRTAPTVIT_____ K V S E R T 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 7 0 858.45593 P36871 P36871 546 552 PGM1 Phosphoglucomutase-1 yes yes 2 0.015644 70.912 By MS/MS By MS/MS 1 2 1.3215 1.1417 13.812 3 Median 0.95455 0.96607 NaN 1 0 Median 1.3721 1.2044 7.5712 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2687500 1435600 1251900 787720 419640 368080 1899800 1016000 883780 0 0 0 0 0 0 0 0 0 0 0 0 37598 2262 39510 199134;199135;199136 202384;202385;202386 202386 3 VSQMAQYFEPLTLAAVGAASK LANAARAEASQLGHKVSQMAQYFEPLTLAA YFEPLTLAAVGAASKTLSHPQQMALLDQTK K V S S K T 5 0 0 0 0 2 1 1 0 0 2 1 1 1 1 2 1 0 1 2 0 0 21 0 2181.114 Q9Y490 Q9Y490 1731 1751 TLN1 Talin-1 yes yes 2;3 8.9256E-09 59.306 By MS/MS By matching By matching By matching 2 1 1 1 1.0137 0.88096 52.384 5 Median 0.7761 0.74907 7.6779 2 1 Median 1.0137 0.88096 NaN 1 0 Median 1.1217 1.2488 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.5543 2.5866 NaN 1 0 Median NaN NaN NaN 0 0 Median 16575000 8616000 7959400 13738000 7322800 6415300 424260 215860 208410 2192500 1011700 1180800 0 0 0 220620 65692 154930 0 0 0 37599 4441 39511 199137;199138;199139;199140;199141 202387;202388;202389;202390 202389 4 VSQMLILTPFQGQGHGAQLLETVHR TVYNYYVYPDKTRPRVSQMLILTPFQGQGH QGQGHGAQLLETVHRYYTEFPTVLDITAED R V S H R Y 1 1 0 0 0 4 1 3 2 1 4 0 1 1 1 1 2 0 0 2 0 0 25 0 2759.4541 O14929 O14929 238 262 HAT1 Histone acetyltransferase type B catalytic subunit yes yes 3;4 8.3725E-13 56.298 By MS/MS By MS/MS By matching 2 4 1 1.0052 0.93467 28.159 7 Median 0.9968 0.95166 2.9635 2 0 Median 1.0961 0.94005 20.526 4 0 Median NaN NaN NaN 0 0 Median 0.58716 0.51098 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63217000 30060000 33158000 33242000 16243000 16999000 27786000 12916000 14870000 0 0 0 2188900 900270 1288600 0 0 0 0 0 0 37600 1504 39512 199142;199143;199144;199145;199146;199147;199148 202391;202392;202393;202394;202395;202396;202397;202398 202392 8 VSQPIEGHAASFAQFK NRVVGAMQLYSVDRKVSQPIEGHAASFAQF SQPIEGHAASFAQFKMEGNAEESTLFCFAV K V S F K M 3 0 0 0 0 2 1 1 1 1 0 1 0 2 1 2 0 0 0 1 0 0 16 0 1715.8631 A0A087WVQ6;Q00610 A0A087WVQ6 194 209 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2;3 3.0901E-10 144.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 5 5 3 1 1 0.99591 0.92562 15.54 21 Median 1.0463 1.0039 19.769 6 0 Median 0.96207 0.85816 16.93 5 0 Median 0.78569 0.85983 7.1581 5 0 Median 1.1388 1.0182 4.9266 3 1 Plateau 0.64716 0.67784 NaN 1 1 Median 1.1241 0.96551 NaN 1 0 Median 816850000 404760000 412090000 443520000 212730000 230790000 159470000 72611000 86855000 163280000 91987000 71298000 31415000 14635000 16781000 18356000 12466000 5889100 805560 327880 477680 37601 44 39513 199149;199150;199151;199152;199153;199154;199155;199156;199157;199158;199159;199160;199161;199162;199163;199164;199165;199166;199167;199168;199169 202399;202400;202401;202402;202403;202404;202405;202406;202407;202408;202409;202410;202411;202412;202413;202414;202415;202416;202417;202418;202419;202420;202421;202422;202423;202424;202425;202426;202427;202428;202429;202430 202404 32 VSQQILEK LDKYAPENLDEQIKKVSQQILEKRAYICAH LDEQIKKVSQQILEKRAYICAHPLDRTC__ K V S E K R 0 0 0 0 0 2 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 943.53385 Q9H845;H0Y8Z9 Q9H845 601 608 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.0024447 108.46 By MS/MS By MS/MS 1 1 1.2838 1.1586 1.2191 2 Median 1.2087 1.1686 NaN 1 0 Median 1.3637 1.1486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9116800 3936800 5180000 1898200 951580 946590 7218700 2985300 4233400 0 0 0 0 0 0 0 0 0 0 0 0 37602 3988 39514 199170;199171 202431;202432;202433 202433 3 VSQVIMEK HTEMITTLKKIRRFKVSQVIMEKSTMLYNK KKIRRFKVSQVIMEKSTMLYNKFKNMFLVG K V S E K S 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 2 0 0 8 0 932.5001 O75475 O75475 408 415 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.0043154 82.279 By MS/MS By matching By matching 1 2 1 1.1167 0.97669 19.842 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82923 0.84181 NaN 1 0 Median 1.1167 0.97143 21.782 2 0 Median NaN NaN NaN 0 0 Median 1.4642 1.2201 NaN 1 0 Median 12497000 6339900 6157600 0 0 0 0 0 0 10890000 5719100 5171000 799380 334330 465050 0 0 0 807960 286490 521470 37603 1674 39515 199172;199173;199174;199175 202434;202435 202435 2 VSQWWER YKLTQRQVNITVQKKVSQWWERLTKQEKRP VNITVQKKVSQWWERLTKQEKRPLFLAPDF K V S E R L 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 7 0 989.47191 Q9P035;H3BS72;H3BPZ1 Q9P035 86 92 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.00067942 138.85 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 1 1.257 1.1861 69.486 7 Median 1.1056 1.0714 7.8465 3 0 Median 1.4864 1.1884 NaN 1 0 Median 1.2838 1.351 NaN 1 0 Median 1.5729 1.3664 NaN 1 0 Median 0.27052 0.19356 NaN 1 0 Median NaN NaN NaN 0 0 Median 90910000 39685000 51225000 43737000 20360000 23377000 30735000 12598000 18137000 15524000 6248300 9276000 525380 189750 335620 388990 289240 99744 0 0 0 37604 4200 39516 199176;199177;199178;199179;199180;199181;199182 202436;202437;202438;202439;202440;202441;202442 202439 7 VSRDTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE K V S V R E 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1307.6834 P62906 P62906 5 15 RPL10A 60S ribosomal protein L10a yes yes 3 5.8453E-05 77.593 By MS/MS By MS/MS By matching By matching By MS/MS 2 1 1 1 2 1.05 0.99449 24.996 7 Median 0.83355 0.86083 20.413 2 0 Median 1.05 0.89172 NaN 1 0 Median 1.0725 1.03 NaN 1 0 Median 0.89677 0.80298 NaN 1 0 Median 1.2394 1.3989 3.7207 2 0 Median NaN NaN NaN 0 0 Median 56584000 25178000 31406000 20165000 9711000 10454000 8544600 3836200 4708400 2145900 690630 1455300 3401700 1678800 1722900 22327000 9261400 13065000 0 0 0 37605 2608 39517 199183;199184;199185;199186;199187;199188;199189 202443;202444;202445;202446;202447 202444 5 VSSDNVADLHEK GAVNLYHVREDGWIRVSSDNVADLHEKYSG WIRVSSDNVADLHEKYSGSTP_________ R V S E K Y 1 0 1 2 0 0 1 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 12 0 1312.6259 P28074 P28074 246 257 PSMB5 Proteasome subunit beta type-5 yes yes 2;3 0.00026027 83.862 By MS/MS By MS/MS By MS/MS 3 2 2 1.049 0.99729 17.118 7 Median 1.1084 1.0297 23.557 3 0 Plateau 1.055 0.90786 15.453 2 0 Median 1.0865 1.0355 5.3138 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30448000 14171000 16277000 16479000 8346700 8131800 7324200 3554400 3769800 6645300 2270200 4375100 0 0 0 0 0 0 0 0 0 37606 2162 39518 199190;199191;199192;199193;199194;199195;199196 202448;202449;202450;202451;202452;202453;202454;202455;202456 202448 9 VSSDVIDQK SDLIDQKVYELQASRVSSDVIDQKVYEIQD ELQASRVSSDVIDQKVYEIQDIYENSWTKL R V S Q K V 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 2 0 0 0 2 0 0 9 0 989.50294 B0QY89;Q9Y262;C9JHP4;C9K0Q7;H7C3A0 B0QY89 122 130 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 2.5204E-06 128.69 By MS/MS By MS/MS 2 1 0.91845 0.90234 9.6332 2 Median 0.91845 0.90234 9.6332 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7644300 3613600 4030700 7644300 3613600 4030700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37607 554 39519 199197;199198;199199 202457;202458;202459 202459 3 VSSFEEK LLGKKGIEKNLGIGKVSSFEEKMISDAIPE EKNLGIGKVSSFEEKMISDAIPELKASIKK K V S E K M 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 2 0 0 0 1 0 0 7 0 824.3916 P40926;G3XAL0 P40926 308 314 MDH2 Malate dehydrogenase, mitochondrial;Malate dehydrogenase yes no 2 0.010611 81.784 By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1.3482 1.22 12.351 4 Median 1.089 1.0504 NaN 1 0 Median 1.5618 1.3171 NaN 1 0 Median 1.1639 1.1301 NaN 1 0 Median 1.5922 1.3614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6526500 2919300 3607200 4192600 2002300 2190300 1700000 656910 1043000 201520 88259 113270 432390 171870 260510 0 0 0 0 0 0 37608 2292 39520 199200;199201;199202;199203 202460;202461;202462;202463;202464 202460 5 VSSGYVPPPVATPFSSK SLLDDMTKNDPFKARVSSGYVPPPVATPFS SGYVPPPVATPFSSKSSTKPAAGGTAPLPP R V S S K S 1 0 0 0 0 0 0 1 0 0 0 1 0 1 4 4 1 0 1 3 0 0 17 0 1718.8879 Q15942;H7C3R3 Q15942 168 184 ZYX Zyxin yes no 2 0.0023476 35.645 By MS/MS By MS/MS 1 1 0.4078 0.4124 16.738 2 Median 0.4823 0.46422 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.34481 0.36637 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5459800 3942700 1517100 3459200 2289900 1169200 0 0 0 2000600 1652700 347900 0 0 0 0 0 0 0 0 0 37609 2978 39521 199204;199205 202465;202466;202467 202466 3 VSSLMWEVR LSTIKQRLENRFYRRVSSLMWEVRYIEHNT NRFYRRVSSLMWEVRYIEHNTRTFNEPGSP R V S V R Y 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 0 9 0 1105.559 Q8WWQ0 Q8WWQ0 1221 1229 PHIP PH-interacting protein yes yes 2 0.0053629 57.859 By MS/MS 1 1.0413 1.0797 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0413 1.0797 NaN 1 0 Median NaN NaN NaN 0 0 Median 7046400 3289800 3756600 0 0 0 0 0 0 0 0 0 0 0 0 7046400 3289800 3756600 0 0 0 37610 3512 39522 199206 202468;202469 202469 2 VSSLQAEPLPR LQTLLHSKGNTQTSKVSSLQAEPLPRLSVK QTSKVSSLQAEPLPRLSVKKLLEGGKGGIA K V S P R L 1 1 0 0 0 1 1 0 0 0 2 0 0 0 2 2 0 0 0 1 0 0 11 0 1195.6561 Q9H2M9 Q9H2M9 914 924 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2 0.00016746 93.111 By MS/MS By MS/MS 1 1 0.83059 0.74435 5.4323 2 Median 0.76088 0.7163 NaN 1 0 Median 0.90669 0.7735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11533000 6722000 4811100 8340200 5201000 3139100 3193000 1521000 1672000 0 0 0 0 0 0 0 0 0 0 0 0 37611 3945 39523 199207;199208 202470;202471;202472;202473 202470 4 VSSPLPSPSAMTDAANSQAAAK YMNLASHIQPGTVNRVSSPLPSPSAMTDAA PSAMTDAANSQAAAKLALRKQLEKTLLEIP R V S A K L 6 0 1 1 0 1 0 0 0 0 1 1 1 0 3 5 1 0 0 1 0 0 22 0 2100.0157 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 316 337 GATAD2B Transcriptional repressor p66-beta yes no 2;3 3.2511E-06 39.005 By MS/MS 2 0.52185 0.55513 1.0368 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52185 0.55513 1.0368 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6534200 4043500 2490700 0 0 0 0 0 0 6534200 4043500 2490700 0 0 0 0 0 0 0 0 0 37612 311 39524 199209;199210 202474;202475 202474 2 VSSQNLVAIPVYVK SFIPPDGNFRLISYRVSSQNLVAIPVYVKH RVSSQNLVAIPVYVKHSISFKENSSCGRFD R V S V K H 1 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 1 4 0 0 14 0 1515.8661 Q9Y2T2 Q9Y2T2 264 277 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.011438 33.229 By MS/MS By matching By matching By matching 3 2 2 2 1.176 1.0029 30.395 9 Median 0.85229 0.80289 10.571 3 0 Median NaN NaN NaN 0 0 Median 1.3498 1.3257 67.482 2 0 Median 1.2629 1.0898 2.3411 2 0 Median NaN NaN NaN 0 0 Median 1.2175 1.0188 2.2192 2 0 Median 14389000 6869800 7519300 8765800 4886700 3879100 0 0 0 4084700 1287800 2796900 1341700 589490 752190 0 0 0 196960 105800 91158 37613 4391 39525 199211;199212;199213;199214;199215;199216;199217;199218;199219 202476;202477 202477 2 VSSQSFSEIER NANALGAKKGLGAQKVSSQSFSEIERQAQV GAQKVSSQSFSEIERQAQVAEKLREQQAAD K V S E R Q 0 1 0 0 0 1 2 0 0 1 0 0 0 1 0 4 0 0 0 1 0 0 11 0 1267.6044 E9PQP3;A0A0D9SF70;G5E9L0;Q8N6H7;E9PIY6 E9PQP3 100 110 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 yes no 2 0.023407 33.866 By MS/MS 1 1.2435 1.2193 NaN 1 Median 1.2435 1.2193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4080200 2064000 2016200 4080200 2064000 2016200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37614 266 39526 199220 202478 202478 1 VSSVFKDEATVR TDTSDPEKVVSAFLKVSSVFKDEATVRMAV FLKVSSVFKDEATVRMAVQDAVDALMQKAF K V S V R M 1 1 0 1 0 0 1 0 0 0 0 1 0 1 0 2 1 0 0 3 0 0 12 1 1336.6987 P46060 P46060 476 487 RANGAP1 Ran GTPase-activating protein 1 yes yes 2;3 1.2219E-06 145.25 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 3 4 4 3 1.0702 1.0762 26.635 20 Median 1.0422 1.0679 9.311 2 0 Median 0.9583 0.89842 35 4 1 Median 1.027 1.0914 15.234 3 0 Median 1.1712 1.1066 22.824 4 0 Median 1.383 1.461 25.717 4 0 Median 1.0363 0.93539 14.797 3 0 Median 178750000 87433000 91314000 13039000 6587200 6451800 19355000 10292000 9063000 95817000 46520000 49297000 25742000 12637000 13106000 17134000 7533800 9600100 7658600 3862400 3796200 37615 2336 39527 199221;199222;199223;199224;199225;199226;199227;199228;199229;199230;199231;199232;199233;199234;199235;199236;199237;199238;199239;199240;199241 202479;202480;202481;202482;202483;202484;202485;202486;202487;202488;202489;202490;202491;202492;202493;202494;202495;202496 202479 18 VSTALSCLLGLPLR EVDGSIMEGGGQILRVSTALSCLLGLPLRV RVSTALSCLLGLPLRVQKIRAGRSTPGLRP R V S L R V 1 1 0 0 1 0 0 1 0 0 5 0 0 0 1 2 1 0 0 1 0 0 14 0 1498.8541 O00442;A6NIC1 O00442 22 35 RTCA RNA 3-terminal phosphate cyclase yes no 2 0.052059 35.414 By MS/MS 1 4.9089 4.2034 NaN 1 Median NaN NaN NaN 0 0 Median 4.9089 4.2034 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1971100 265140 1706000 0 0 0 1971100 265140 1706000 0 0 0 0 0 0 0 0 0 0 0 0 37616 1464 39528 199242 202497 202497 1 VSTAVLSITAK YPAPLEVPKEKEKEKVSTAVLSITAKAKKK EKEKVSTAVLSITAKAKKKEKEKEKKEEEK K V S A K A 2 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2 2 0 0 2 0 0 11 0 1088.6441 A0A087WW66;Q99460 A0A087WW66 828 838 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.00014634 116.52 By MS/MS By MS/MS By matching By matching By matching By matching 5 5 1 1 1 1 1.2248 1.0762 23.299 14 Median 1.1838 1.1393 16.764 5 0 Median 1.2181 1.0362 11.57 5 0 Median 1.7234 1.8911 NaN 1 0 Median 1.3412 1.1284 NaN 1 0 Median 1.6055 1.6492 NaN 1 0 Median 1.2235 1.026 NaN 1 0 Median 92403000 41695000 50707000 59998000 27486000 32512000 26015000 11697000 14318000 3218600 1213600 2005000 1494800 606040 888750 1365400 563150 802250 310640 129490 181150 37617 54 39529 199243;199244;199245;199246;199247;199248;199249;199250;199251;199252;199253;199254;199255;199256 202498;202499;202500;202501;202502;202503;202504 202501 7 VSTDLLR ETTDIISRHLPGVCKVSTDLLREGAPIEPD RHLPGVCKVSTDLLREGAPIEPDPPVSHWK K V S L R E 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 802.45487 Q96HS1;F5GXG4 Q96HS1 170 176 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes no 2 0.0059834 100.07 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 2 1.6082 1.3418 112.09 7 Median 1.3858 1.2973 NaN 1 1 Median 1.7966 1.4941 NaN 1 1 Median 1.2616 1.2391 NaN 1 1 Median 1.6082 1.3418 NaN 1 0 Median 0.98871 0.9751 NaN 1 0 Median 7.4221 6.5725 187.91 2 0 Median 79834000 16782000 63052000 12575000 5569800 7005400 11713000 3381500 8331500 2620200 1199200 1421000 11871000 4186100 7684600 2727700 1183900 1543900 38327000 1261100 37066000 37618 3669 39530 199257;199258;199259;199260;199261;199262;199263 202505;202506;202507;202508;202509 202505 5 VSTEVDAR FVLFGAEILKKIPGRVSTEVDARLSFDKDA LKKIPGRVSTEVDARLSFDKDAMVARARRL R V S A R L 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 8 0 875.43486 P37837;F2Z393 P37837 103 110 TALDO1 Transaldolase yes no 2 0.013601 52.716 By MS/MS By MS/MS By matching 2 2 1 1.0972 1.0305 7.0527 5 Median 1.0706 1.0414 6.7558 2 0 Median 1.3025 1.1054 9.9183 2 0 Median 1.05 1.0213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17102000 7805400 9297000 8066900 3807500 4259400 8632900 3810100 4822800 402570 187810 214760 0 0 0 0 0 0 0 0 0 37619 2270 39531 199264;199265;199266;199267;199268 202510;202511;202512;202513;202514;202515 202510 6 VSTLGLYMEANR VRCYVHIMKEGLCSRVSTLGLYMEANRQVP CSRVSTLGLYMEANRQVPKLLSALCPEEPP R V S N R Q 1 1 1 0 0 0 1 1 0 0 2 0 1 0 0 1 1 0 1 1 0 0 12 0 1352.6758 H0Y580;Q9NR50 H0Y580 134 145 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes no 2 0.045475 26.043 By MS/MS By matching 1 1 1.0269 0.95828 3.3663 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0867 0.93574 NaN 1 0 Median 0.97051 0.98137 NaN 1 0 Median NaN NaN NaN 0 0 Median 2946500 1213500 1733000 0 0 0 0 0 0 0 0 0 1735000 713480 1021500 1211400 500010 711420 0 0 0 37620 1150 39532 199269;199270 202516 202516 1 VSTLPAITLK AVPLIQGEYMIPCEKVSTLPAITLKLGGKG IPCEKVSTLPAITLKLGGKGYKLSPEDYTL K V S L K L 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 1 2 0 0 1 0 0 10 0 1041.6434 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GU92;A0A1B0GU03;H7C469;H7C1V0 A0A1B0GW44 325 334 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.00067462 72.325 By MS/MS By MS/MS By MS/MS By matching By matching By matching 4 4 1 3 1 1 1.4273 1.2479 58.139 14 Median 1.6739 1.5256 17.013 4 0 Median 0.88229 0.72723 72.904 4 0 Median 1.3132 1.2312 NaN 1 0 Median 1.3404 1.1339 79.017 3 0 Median 1.521 1.5481 NaN 1 0 Median 1.5233 1.2612 NaN 1 0 Median 206700000 87391000 119300000 121650000 50498000 71152000 49902000 23800000 26101000 20390000 7336000 13054000 2490500 922580 1567900 8296000 3227000 5069100 3967600 1607100 2360400 37621 324 39533 199271;199272;199273;199274;199275;199276;199277;199278;199279;199280;199281;199282;199283;199284 202517;202518;202519;202520;202521;202522;202523;202524;202525;202526;202527;202528;202529 202526 13 VSTVAGIGIQGTDK TENHLIRKIDLEAEKVSTVAGIGIQGTDKE KVSTVAGIGIQGTDKEGGAKGEQQPISSPW K V S D K E 1 0 0 1 0 1 0 3 0 2 0 1 0 0 0 1 2 0 0 2 0 0 14 0 1344.7249 Q8NBF2 Q8NBF2 311 324 NHLRC2 NHL repeat-containing protein 2 yes yes 2 0.041149 67.726 By MS/MS By matching 1 1 0.82904 0.74278 26.432 2 Median 0.96359 0.89543 NaN 1 0 Median 0.71328 0.61616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7637300 3819700 3817600 6092500 3099200 2993200 1544900 720490 824370 0 0 0 0 0 0 0 0 0 0 0 0 37622 3402 39534 199285;199286 202530 202530 0 VSTVFWK KKPPKPQLMANYYNKVSTVFWKSGNALFHA LMANYYNKVSTVFWKSGNALFHASTLHRLY K V S W K S 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 0 2 0 0 7 0 865.46979 Q14152 Q14152 279 285 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.020466 60.294 By MS/MS By matching By matching 1 3 1 1.4515 1.2767 20.254 5 Median 1.2632 1.2185 NaN 1 0 Median 1.4515 1.2767 19.664 3 0 Median 1.6823 1.8088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26210000 11506000 14703000 15499000 6978900 8519600 8905600 3717300 5188300 1805500 810080 995470 0 0 0 0 0 0 0 0 0 37623 2860 39535 199287;199288;199289;199290;199291 202531 202531 1 VSTVMDTVGR GRILTTRIHELKQAKVSTVMDTVGRRLRDS LKQAKVSTVMDTVGRRLRDSLGRTVDLGLT K V S G R R 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 3 0 0 10 0 1063.5332 Q9H845;H0Y8Z9 Q9H845 460 469 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 2 0.00036469 116.05 By MS/MS By MS/MS 1 1 1.4185 1.298 1.1003 2 Median 1.3306 1.288 NaN 1 0 Median 1.5123 1.3082 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17004000 7201100 9803100 5730800 2507700 3223000 11273000 4693300 6580100 0 0 0 0 0 0 0 0 0 0 0 0 37624 3988 39536 199292;199293 202532;202533;202534;202535 202532 4 VSVADHSLHLSK HFYAGGQVYPGEASRVSVADHSLHLSKAKI ASRVSVADHSLHLSKAKISKPAPYWEGTAV R V S S K A 1 0 0 1 0 0 0 0 2 0 2 1 0 0 0 3 0 0 0 2 0 0 12 0 1291.6884 Q13162;A6NG45 Q13162 67 78 PRDX4 Peroxiredoxin-4 yes no 2;3 4.0738E-66 248.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 5 2 1 1 1 1.3254 1.2081 14.152 16 Median 1.189 1.1061 8.7301 8 0 Median 1.5229 1.2546 7.171 4 0 Median 1.3618 1.2768 6.0522 2 0 Median 1.6505 1.3693 NaN 1 1 Median NaN NaN NaN 0 0 Median 2.001 1.6846 NaN 1 1 Median 806440000 352460000 453980000 598470000 267130000 331340000 146760000 58708000 88051000 47080000 21824000 25256000 10446000 4092700 6353800 1628100 0 1628100 2056100 704690 1351400 37625 2793 39537 199294;199295;199296;199297;199298;199299;199300;199301;199302;199303;199304;199305;199306;199307;199308;199309;199310;199311 202536;202537;202538;202539;202540;202541;202542;202543;202544;202545;202546;202547;202548;202549;202550;202551;202552;202553;202554;202555;202556 202542 20 VSVAGGTQPLLLAK SNKDSGIITPEKELKVSVAGGTQPLLLAKE KVSVAGGTQPLLLAKEEDVATKRSKPTEDN K V S A K E 2 0 0 0 0 1 0 2 0 0 3 1 0 0 1 1 1 0 0 2 0 0 14 0 1352.8028 E7EVZ1;A0A494BZV7;E5RI93 E7EVZ1 1155 1168 ZFHX4 yes no 2 0.0048718 37.749 By MS/MS 1 0.72681 0.78282 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72681 0.78282 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4594500 2652200 1942200 0 0 0 0 0 0 4594500 2652200 1942200 0 0 0 0 0 0 0 0 0 37626 898 39538 199312 202557 202557 1 VSVAVEASADSSK HSKASNAAVKLAESKVSVAVEASADSSKTD SKVSVAVEASADSSKTDKKLQIQEKAAQEV K V S S K T 3 0 0 1 0 0 1 0 0 0 0 1 0 0 0 4 0 0 0 3 0 0 13 0 1248.6198 F8VXG7;Q99590;A0A087WTB7 F8VXG7 1168 1180 SCAF11 Protein SCAF11 yes no 2 0.0012355 72.006 By MS/MS 1 0.34819 0.36435 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.34819 0.36435 NaN 1 1 Median NaN NaN NaN 0 0 Median 7888700 6313000 1575700 0 0 0 0 0 0 0 0 0 0 0 0 7888700 6313000 1575700 0 0 0 37627 1072 39539 199313 202558 202558 1 VSVELTNSLFK LFRISEDKNPDYRKRVSVELTNSLFKHDPA YRKRVSVELTNSLFKHDPAAWEAAQSMIPI R V S F K H 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 2 1 0 0 2 0 0 11 0 1235.6762 P14923 P14923 664 674 JUP Junction plakoglobin yes yes 2 0.018812 46.891 By matching By matching By MS/MS By MS/MS 2 1 1 1 0.87871 0.9005 46.196 5 Median 0.94333 0.92599 12.682 2 0 Median 0.34709 0.36735 NaN 1 0 Median 1.177 1.2163 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.87871 0.9005 NaN 1 0 Median NaN NaN NaN 0 0 Median 20489000 12645000 7844200 2654300 1506200 1148100 2432500 1986900 445610 7181500 3339800 3841700 0 0 0 8220500 5811700 2408800 0 0 0 37628 2013 39540 199314;199315;199316;199317;199318 202559;202560 202560 2 VSVEYTEK SDPIVFVVGAFAHGKVSVEYTEKMVSISNY GAFAHGKVSVEYTEKMVSISNYPLSAALTC K V S E K M 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 8 0 953.47058 Q92979;A0A087WVM7 Q92979 208 215 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes no 2 0.0041451 83.265 By matching By MS/MS By MS/MS 1 1 1 1.3673 1.1329 144.21 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.092532 0.10618 NaN 1 0 Median 1.3673 1.1329 NaN 1 0 Median 1.4062 1.4448 NaN 1 0 Median NaN NaN NaN 0 0 Median 12783000 8447100 4335600 0 0 0 0 0 0 5659500 5324200 335370 3851800 1869300 1982500 3271400 1253600 2017800 0 0 0 37629 3571 39541 199319;199320;199321 202561;202562;202563;202564 202561 4 VSVFFGGLSIK SKEYERFSKYMPSVKVSVFFGGLSIKKDEE PSVKVSVFFGGLSIKKDEEVLKKNCPHVVV K V S I K K 0 0 0 0 0 0 0 2 0 1 1 1 0 2 0 2 0 0 0 2 0 0 11 0 1152.6543 O00148;K7EQN7;A0A0D9SEM9 O00148 144 154 DDX39A ATP-dependent RNA helicase DDX39A no no 2 0.00096639 61.65 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 3 3 1.0831 0.99817 24.08 11 Median NaN NaN NaN 0 0 Median 1.1266 0.99817 NaN 1 0 Median 1.06 1.0164 11.657 3 0 Median 1.0533 0.94794 NaN 1 0 Median 1.3629 1.4017 15.161 3 0 Median 0.98678 0.83483 15.296 3 0 Plateau 55065000 26631000 28434000 0 0 0 379050 171460 207590 32836000 16068000 16768000 15888000 7450900 8437200 4113900 1982700 2131200 1848000 958280 889710 37630 1441;260 39542 199322;199323;199324;199325;199326;199327;199328;199329;199330;199331;199332 202565;202566;202567;202568;202569;202570 202565 6 VSVFQTQLPSLGAGLLQSR ALQAAFKLMSPTGGRVSVFQTQLPSLGAGL QTQLPSLGAGLLQSREDPNQRSSTKVVQHL R V S S R E 1 1 0 0 0 3 0 2 0 0 4 0 0 1 1 3 1 0 0 2 0 0 19 0 2000.1055 O95487 O95487 808 826 SEC24B Protein transport protein Sec24B yes yes 2 0.043623 20.663 By MS/MS By matching 2 3 1.0175 1.0535 28.058 5 Median 1.2882 1.2981 29.523 2 0 Median NaN NaN NaN 0 0 Median 1.0175 1.0886 19.53 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3745000 1871200 1873800 2528700 1212100 1316600 0 0 0 1216300 659090 557200 0 0 0 0 0 0 0 0 0 37631 1778 39543 199333;199334;199335;199336;199337 202571 202571 1 VSVGAPDLSLEASEGSIK LQGDLAVSGDIKCPKVSVGAPDLSLEASEG GAPDLSLEASEGSIKLPKMKLPQFGISTPG K V S I K L 2 0 0 1 0 0 2 2 0 1 2 1 0 0 1 4 0 0 0 2 0 0 18 0 1757.9047 Q09666 Q09666 5385 5402 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 4.7129E-13 124.07 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 3 3 1 0.93785 0.93923 24.339 9 Median 0.93634 0.93926 NaN 1 0 Median 0.85702 0.74892 NaN 1 0 Median 0.95586 1.0251 14.812 3 0 Median 1.0534 0.93923 3.1292 3 0 Median 0.46581 0.48873 NaN 1 0 Median NaN NaN NaN 0 0 Median 40691000 20028000 20664000 18825000 8630600 10195000 2435200 1616600 818550 13380000 6729200 6651100 4805900 2315200 2490700 1244600 735880 508750 0 0 0 37632 2749 39544 199338;199339;199340;199341;199342;199343;199344;199345;199346 202572;202573;202574;202575;202576;202577;202578;202579 202573 8 VSVGAPDLSLEASEGSIKLPK LQGDLAVSGDIKCPKVSVGAPDLSLEASEG DLSLEASEGSIKLPKMKLPQFGISTPGSDL K V S P K M 2 0 0 1 0 0 2 2 0 1 3 2 0 0 2 4 0 0 0 2 0 0 21 1 2096.1365 Q09666 Q09666 5385 5405 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 2.0472E-06 40.81 By MS/MS By matching 2 3 0.9269 1.0537 46.587 5 Median 0.62941 0.67699 35.263 2 0 Median NaN NaN NaN 0 0 Median 1.0642 1.2144 30.283 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20156000 9811000 10345000 13044000 7318400 5725300 0 0 0 7112300 2492600 4619700 0 0 0 0 0 0 0 0 0 37633 2749 39545 199347;199348;199349;199350;199351 202580;202581 202581 2 VSVGEFVGEGEGK ARESGPPHMKNFVTKVSVGEFVGEGEGKSK TKVSVGEFVGEGEGKSKKISKKNAAIAVLE K V S G K S 0 0 0 0 0 0 3 4 0 0 0 1 0 1 0 1 0 0 0 3 0 0 13 0 1292.6248 O95793;A0A087X1A5;Q5JW30;Q5JW28 O95793 220 232 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes no 2 0.0012216 68.536 By MS/MS By MS/MS By MS/MS 1 1 1 1.4919 1.4241 28.338 3 Median 2.0427 1.9093 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2608 1.0834 NaN 1 0 Median 1.4919 1.4241 NaN 1 0 Median NaN NaN NaN 0 0 Median 33230000 12080000 21150000 19188000 5862100 13325000 0 0 0 0 0 0 2100800 865650 1235200 11941000 5352100 6589300 0 0 0 37634 1794 39546 199352;199353;199354 202582;202583;202584;202585 202583 4 VSVGIHKEDIDAAIETYNLLSER INGKVAERPQHMLMRVSVGIHKEDIDAAIE DIDAAIETYNLLSERWFTHASPTLFNAGTN R V S E R W 2 1 1 2 0 0 3 1 1 3 2 1 0 0 0 2 1 0 1 2 0 0 23 1 2571.318 P23921 P23921 174 196 RRM1 Ribonucleoside-diphosphate reductase large subunit yes yes 3;4 2.9152E-12 60.765 By MS/MS By MS/MS 1 3 1.0874 1.0803 2.7468 4 Median 1.0342 1.0604 NaN 1 0 Median 1.1176 1.1111 2.7876 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26051000 11308000 14743000 4239700 1784700 2455000 21812000 9523500 12288000 0 0 0 0 0 0 0 0 0 0 0 0 37635 2121 39547 199355;199356;199357;199358 202586;202587;202588;202589;202590 202587 5 VSVHVIEGDHR DLGADYNLSQVCDGKVSVHVIEGDHRTLLE CDGKVSVHVIEGDHRTLLEGSGLESIISII K V S H R T 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1246.6418 P49327;A0A0U1RQF0 P49327 2472 2482 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 5.1239E-06 104.79 By MS/MS By MS/MS By MS/MS By MS/MS 5 7 1 1 1.1161 1.1771 27.093 13 Median 0.83899 0.82568 20.804 5 0 Median 1.4656 1.2381 25.732 6 1 Median 1.0856 1.2048 NaN 1 0 Median 1.5623 1.3729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83163000 36423000 46740000 26098000 12256000 13841000 54640000 22960000 31680000 1796900 950070 846800 627790 256460 371340 0 0 0 0 0 0 37636 2377 39548 199359;199360;199361;199362;199363;199364;199365;199366;199367;199368;199369;199370;199371;199372 202591;202592;202593;202594;202595;202596;202597;202598;202599;202600;202601;202602;202603;202604;202605;202606;202607 202605 17 VSVHVLAR FYKEMLAVDAPRRHKVSVHVLAREMDSCPV DAPRRHKVSVHVLAREMDSCPVVGEFPCQN K V S A R E 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 3 0 0 8 0 879.52904 P14735;A0A3B3ISG5 P14735 954 961 IDE Insulin-degrading enzyme yes no 2 0.025786 42.396 By matching By MS/MS 1 1 1.1198 1.0305 4.0978 2 Median 1.0511 1.0608 NaN 1 0 Median 1.1931 1.0011 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8616300 3552200 5064100 1042600 464230 578400 7573700 3088000 4485700 0 0 0 0 0 0 0 0 0 0 0 0 37637 423 39549 199373;199374 202608;202609 202609 2 VSVIGLSAEVR NIYDLIKTLKAAKIRVSVIGLSAEVRVCTV AKIRVSVIGLSAEVRVCTVLARETGGTYHV R V S V R V 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 3 0 0 11 0 1128.6503 D6RID8;Q6P1K8;Q13888 D6RID8 179 189 GTF2H2C;GTF2H2 General transcription factor IIH subunit 2-like protein;General transcription factor IIH subunit 2 yes no 2 0.00020974 99.815 By MS/MS By matching 1 1 1.1878 1.147 17.632 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92875 1.0126 NaN 1 0 Median 1.5192 1.2993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11744000 5780200 5963600 0 0 0 0 0 0 11313000 5615700 5697600 430570 164520 266050 0 0 0 0 0 0 37638 827 39550 199375;199376 202610;202611 202611 2 VSVINTVDTSHEDMIHDAQMDYYGTR ______________________________ EDMIHDAQMDYYGTRLATCSSDRSVKIFDV M V S T R L 1 1 1 4 0 1 1 1 2 2 0 0 2 0 0 2 3 0 2 3 0 0 26 0 2996.328 P55735 P55735 2 27 SEC13 Protein SEC13 homolog yes yes 3 3.3833E-25 76.421 By matching By MS/MS 3 3 0.9326 0.93827 18.306 6 Median 0.90989 0.92964 27.779 3 0 Median NaN NaN NaN 0 0 Median 0.95589 0.94698 4.3632 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29141000 14089000 15052000 2704200 1388700 1315500 0 0 0 26437000 12701000 13737000 0 0 0 0 0 0 0 0 0 37639 2500 39551;39552 199377;199378;199379;199380;199381;199382 202612;202613;202614;202615;202616 202616 1188 5 VSVIQDFVK LTASLQCNSTAQTEKVSVIQDFVKMCLEAN TAQTEKVSVIQDFVKMCLEANIPLEKADHP K V S V K M 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 3 0 0 9 0 1033.5808 Q9UFW8 Q9UFW8 101 109 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 2 0.001584 79.906 By MS/MS By matching By MS/MS By MS/MS 2 4 2 2 1.0113 0.89493 23.424 10 Median 0.78998 0.74454 3.1332 2 0 Median 1.1023 0.94975 34.911 4 0 Median 0.95086 0.91946 12.704 2 0 Median 1.1898 0.97885 3.7948 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70215000 32544000 37671000 4534000 2290600 2243400 2847100 1319500 1527600 52889000 24398000 28491000 9944300 4536000 5408300 0 0 0 0 0 0 37640 4260 39553 199383;199384;199385;199386;199387;199388;199389;199390;199391;199392 202617;202618;202619;202620;202621;202622;202623;202624 202620 8 VSVPSGQIGGPIALPSDHQTGGLSIGASSR SKIKVKESSTKPDKKVSVPSGQIGGPIALP SDHQTGGLSIGASSRELPSQASGGLANPPP K V S S R E 2 1 0 1 0 2 0 6 1 3 2 0 0 0 3 6 1 0 0 2 0 0 30 0 2844.473 Q9NPG3;K7EJT1 Q9NPG3 610 639 UBN1 Ubinuclein-1 yes no 3 3.7498E-09 42.347 By MS/MS By matching 1 1 0.64887 0.63284 16.205 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.51314 0.56433 NaN 1 0 Median 0.82051 0.70968 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8158600 5144700 3013900 0 0 0 0 0 0 7742600 4927900 2814600 416030 216780 199250 0 0 0 0 0 0 37641 4051 39554 199393;199394 202625;202626 202625 2 VSVPSNLSYGEWLHGFEK VELEAKEVLKKLFPKVSVPSNLSYGEWLHG PSNLSYGEWLHGFEKKAKECMAGTSGSEEV K V S E K K 0 0 1 0 0 0 2 2 1 0 2 1 0 1 1 3 0 1 1 2 0 0 18 0 2048.0003 Q86UP2;G3V4Y7;B7Z6P3;G3V5P0 Q86UP2 1083 1100 KTN1 Kinectin yes no 2;3 0.00011843 47.189 By MS/MS By MS/MS By MS/MS By matching 4 1 2 2 1.0993 0.98792 50.604 9 Median 0.95821 0.94553 79.254 4 1 Median 1.1014 0.94288 NaN 1 0 Median 1.0072 1.0809 10.318 2 0 Median 1.1126 0.98378 0.59379 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23556000 12775000 10781000 18719000 10318000 8400900 1094000 565260 528740 3322400 1700100 1622300 420190 191550 228640 0 0 0 0 0 0 37642 3280 39555 199395;199396;199397;199398;199399;199400;199401;199402;199403 202627;202628;202629;202630;202631;202632 202627 6 VSVTTNTTDSVSDEEK LVQLPLSGNREYSARVSVTTNTTDSVSDEE SVTTNTTDSVSDEEKVSGGKDGNGSSTSVQ R V S E K V 0 0 1 2 0 0 2 0 0 0 0 1 0 0 0 3 4 0 0 3 0 0 16 0 1710.7796 A0A3B3IUB9;Q9NR09 Q9NR09 2944 2959 BIRC6 Baculoviral IAP repeat-containing protein 6 no no 2 0.0001317 64.55 By MS/MS By MS/MS 1 1 1.2158 1.1286 9.0663 2 Median 1.2184 1.2033 NaN 1 0 Median 1.2132 1.0585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4981800 2200600 2781200 2082400 900970 1181400 2899400 1299600 1599800 0 0 0 0 0 0 0 0 0 0 0 0 37643 4073;445 39556 199404;199405 202633;202634 202633 2 VSWEEVK SKFRTICSSVDKLDKVSWEEVKNEMVGEKG SSVDKLDKVSWEEVKNEMVGEKGLAPEVAD K V S V K N 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 1 0 2 0 0 7 0 875.43888 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2 P12081 244 250 HARS Histidine--tRNA ligase, cytoplasmic yes no 2 0.02008 60.76 By MS/MS By MS/MS 1 1 1.3221 1.136 10.182 2 Median NaN NaN NaN 0 0 Median 1.4227 1.2208 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2287 1.0571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881000 1786600 2094400 0 0 0 2249900 1028700 1221200 0 0 0 1631100 757910 873170 0 0 0 0 0 0 37644 1975 39557 199406;199407 202635;202636;202637 202636 3 VSWEEVKNEMVGEK SKFRTICSSVDKLDKVSWEEVKNEMVGEKG KVSWEEVKNEMVGEKGLAPEVADRIGDYVQ K V S E K G 0 0 1 0 0 0 4 1 0 0 0 2 1 0 0 1 0 1 0 3 0 0 14 1 1662.7923 P12081;B3KWE1;B4DDD8;B4E1C5;E7ETE2 P12081 244 257 HARS Histidine--tRNA ligase, cytoplasmic yes no 3 0.0014284 38.028 By matching By matching By MS/MS By matching 1 1 1 1 1.0555 1.0496 17.321 4 Median 0.93534 0.90013 NaN 1 0 Median 1.0163 0.95989 NaN 1 0 Median 1.0962 1.1477 NaN 1 0 Median 1.3184 1.3179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9694000 4811300 4882600 3455600 1911800 1543800 226430 123480 102950 5317600 2484100 2833500 694280 291920 402350 0 0 0 0 0 0 37645 1975 39558 199408;199409;199410;199411 202638;202639 202639 2 VSWLGEEPVAGVWSEK ELAMVPHYGGINRVRVSWLGEEPVAGVWSE SWLGEEPVAGVWSEKGQVEVFALRRLLQVV R V S E K G 1 0 0 0 0 0 3 2 0 0 1 1 0 0 1 2 0 2 0 3 0 0 16 0 1771.8781 Q9BQ67;M0QX71 Q9BQ67 157 172 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes no 2 0.0029701 36.284 By MS/MS By matching 1 1 0.71451 0.64937 8.5782 2 Median 0.72594 0.68997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70327 0.61115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4547600 2646200 1901300 3840100 2245300 1594800 0 0 0 0 0 0 707470 400890 306580 0 0 0 0 0 0 37646 3784 39559 199412;199413 202640 202640 1 VSWQDLK VRTENRLIVENLSSRVSWQDLKDFMRQAGE IVENLSSRVSWQDLKDFMRQAGEVTFADAH R V S L K D 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 7 0 874.45487 Q13243 Q13243 119 125 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 2 0.042585 43.814 By matching By matching By MS/MS 1 2 1 1.2633 1.1391 19.369 4 Median 1.099 1.0369 NaN 1 0 Median 1.2689 1.1035 17.777 2 0 Median 1.3901 1.4933 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7369000 3548900 3820100 2517300 1284900 1232400 1241500 562460 679020 3610200 1701500 1908700 0 0 0 0 0 0 0 0 0 37647 2800 39560 199414;199415;199416;199417 202641 202641 1 VSWQDLKDFMR VRTENRLIVENLSSRVSWQDLKDFMRQAGE LSSRVSWQDLKDFMRQAGEVTFADAHRPKL R V S M R Q 0 1 0 2 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 1 0 0 11 1 1423.6918 Q13243 Q13243 119 129 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 2;3 0.0070039 80.239 By MS/MS By matching By MS/MS 2 1 2 1.1042 1.1902 28.148 5 Median 1.2568 1.3438 4.7601 2 1 Median 0.7179 0.68393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0566 1.1132 9.4547 2 0 Median NaN NaN NaN 0 0 Median 4205300 1745400 2459900 2153500 870090 1283400 141840 47316 94528 0 0 0 0 0 0 1910000 827990 1082000 0 0 0 37648 2800 39561 199418;199419;199420;199421;199422 202642;202643 202642 2 VSYALLFGDYLPQNIQAAR LQKAASMNHTKALERVSYALLFGDYLPQNI LLFGDYLPQNIQAAREMFEKLTEEGSPKGQ R V S A R E 3 1 1 1 0 2 0 1 0 1 3 0 0 1 1 1 0 0 2 1 0 0 19 0 2138.116 Q9UBV2 Q9UBV2 225 243 SEL1L Protein sel-1 homolog 1 yes yes 2 0.0022379 30.828 By MS/MS 2 0.9345 0.93052 5.3606 2 Median 0.9345 0.93052 5.3606 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2542900 1323200 1219700 2542900 1323200 1219700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37649 4250 39562 199423;199424 202644;202645 202644 2 VSYARPSSEVIK INTLNGLRLQSKTIKVSYARPSSEVIKDAN TIKVSYARPSSEVIKDANLYISGLPRTMTQ K V S I K D 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 3 0 0 1 2 0 0 12 1 1334.7194 Q15717;M0QZR9;M0R055 Q15717 93 104 ELAVL1 ELAV-like protein 1 yes no 2;3 5.8832E-05 97.813 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 2 2 4 4 4 1.0165 0.97124 33.542 19 Median 1.0611 1.0594 1.1763 3 0 Plateau 0.96773 0.87295 2.2495 2 0 Median 0.89068 0.93768 9.0251 2 0 Median 1.0411 0.93729 7.7483 4 0 Median 0.8972 1.0595 16.743 4 0 Linear 1.3409 1.3345 60.807 4 0 Median 257220000 128400000 128820000 16178000 7031600 9146200 6775900 3293800 3482100 10740000 4939100 5801400 18961000 9165300 9796200 176240000 90625000 85618000 28324000 13343000 14981000 37650 2964 39563 199425;199426;199427;199428;199429;199430;199431;199432;199433;199434;199435;199436;199437;199438;199439;199440;199441;199442;199443 202646;202647;202648;202649;202650;202651;202652;202653;202654;202655;202656;202657;202658;202659;202660;202661;202662;202663;202664;202665 202651 20 VSYARPSSEVIKDANLYISGLPR INTLNGLRLQSKTIKVSYARPSSEVIKDAN EVIKDANLYISGLPRTMTQKDVEDMFSRFG K V S P R T 2 2 1 1 0 0 1 1 0 2 2 1 0 0 2 4 0 0 2 2 0 0 23 2 2534.3493 Q15717;M0QZR9;M0R055 Q15717 93 115 ELAVL1 ELAV-like protein 1 yes no 3;4 1.6678E-05 58.015 By MS/MS 2 0.544 0.62055 32.496 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.544 0.62055 32.496 2 2 Median NaN NaN NaN 0 0 Median 29701000 17596000 12105000 0 0 0 0 0 0 0 0 0 0 0 0 29701000 17596000 12105000 0 0 0 37651 2964 39564 199444;199445 202666;202667 202666 2 VSYFAVFDGHGGIR DITEECRPPSSLITRVSYFAVFDGHGGIRA RVSYFAVFDGHGGIRASKFAAQNLHQNLIR R V S I R A 1 1 0 1 0 0 0 3 1 1 0 0 0 2 0 1 0 0 1 2 0 0 14 0 1523.7521 Q9H0C8;E9PC05 Q9H0C8 145 158 ILKAP Integrin-linked kinase-associated serine/threonine phosphatase 2C yes no 3 0.0038258 31.389 By MS/MS By MS/MS By matching 1 1 1 1.3547 1.3551 42.154 3 Median 2.5907 2.5682 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3547 1.3551 NaN 1 0 Median 1.3262 1.159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7879200 3506600 4372600 1399100 521110 877970 0 0 0 5978700 2735700 3243000 501430 249790 251640 0 0 0 0 0 0 37652 3923 39565 199446;199447;199448 202668;202669 202669 2 VSYFPTVPGVYIVSTK KVDIQTEDLEDGTCKVSYFPTVPGVYIVST SYFPTVPGVYIVSTKFADEHVPGSPFTVKI K V S T K F 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 2 2 0 2 4 0 0 16 0 1755.9447 O75369;E7EN95;H7C5L4 O75369 2059 2074 FLNB Filamin-B yes no 2 0.00013985 62.042 By MS/MS By MS/MS By matching By matching 2 2 1 2 0.92838 0.8491 6.8915 7 Median 0.87144 0.8569 2.2591 2 0 Median 0.95304 0.83992 1.5385 2 0 Median 0.65355 0.71873 NaN 1 0 Median 0.95451 0.86842 2.7968 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 62546000 32212000 30334000 51319000 26578000 24741000 9832800 4866300 4966500 578910 357620 221290 814740 409980 404760 0 0 0 0 0 0 37653 1664 39566 199449;199450;199451;199452;199453;199454;199455 202670;202671;202672;202673;202674;202675;202676 202673 7 VSYGIGDEEHDQEGR GYSGVGLLSRQCPLKVSYGIGDEEHDQEGR VSYGIGDEEHDQEGRVIVAEFDSFVLVTAY K V S G R V 0 1 0 2 0 1 3 3 1 1 0 0 0 0 0 1 0 0 1 1 0 0 15 0 1689.7231 G3V3M6;P27695;G3V3C7;G3V5M0;G3V359 G3V3M6 142 156 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes no 2;3 2.6067E-10 112.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 5 1 1.0305 0.9499 30.997 13 Median 0.95274 0.93486 1.5098 2 0 Median 1.2547 1.0665 1.5596 2 0 Median 1.0305 0.99824 7.4 3 0 Plateau 1.1351 0.94729 49.373 5 0 Median NaN NaN NaN 0 0 Median 1.2878 1.0742 NaN 1 0 Median 203030000 93779000 109250000 6580300 3277200 3303100 4939700 2379400 2560400 83629000 41275000 42354000 105890000 45979000 59906000 0 0 0 1993900 868040 1125900 37654 1112 39567 199456;199457;199458;199459;199460;199461;199462;199463;199464;199465;199466;199467;199468 202677;202678;202679;202680;202681;202682;202683;202684;202685;202686;202687;202688;202689;202690;202691;202692;202693;202694;202695;202696;202697;202698 202680 22 VSYIPDEQIAQGPENGR IMKLNGHQLENHALKVSYIPDEQIAQGPEN YIPDEQIAQGPENGRRGGFGSRGQPRQGSP K V S G R R 1 1 1 1 0 2 2 2 0 2 0 0 0 0 2 1 0 0 1 1 0 0 17 0 1871.9014 Q9NZI8 Q9NZI8 151 167 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 3.8233E-12 146.36 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.86308 0.80702 21.871 4 Median 0.63123 0.59817 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87008 0.9106 NaN 1 0 Median 0.85614 0.71522 NaN 1 0 Median 0.90169 0.95643 NaN 1 0 Median NaN NaN NaN 0 0 Median 24390000 13404000 10986000 14491000 8541200 5949600 0 0 0 5251200 2591400 2659800 2216400 1152900 1063500 2431600 1118700 1312900 0 0 0 37655 4188 39568 199469;199470;199471;199472 202699;202700;202701;202702;202703 202699 5 VSYIPDEQIAQGPENGRR IMKLNGHQLENHALKVSYIPDEQIAQGPEN IPDEQIAQGPENGRRGGFGSRGQPRQGSPV K V S R R G 1 2 1 1 0 2 2 2 0 2 0 0 0 0 2 1 0 0 1 1 0 0 18 1 2028.0025 Q9NZI8 Q9NZI8 151 168 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 1.3213E-11 101.53 By MS/MS 1 0.74755 0.73651 NaN 1 Median 0.74755 0.73651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19458000 11215000 8242800 19458000 11215000 8242800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37656 4188 39569 199473 202704;202705 202705 2 VSYLRPLDFEEAR GTGELCDAISAVEEKVSYLRPLDFEEAREL EKVSYLRPLDFEEARELFLLGQHYVFEAKE K V S A R E 1 2 0 1 0 0 2 0 0 0 2 0 0 1 1 1 0 0 1 1 0 0 13 1 1593.8151 A0A1B0GUA3;Q96EK5 A0A1B0GUA3 406 418 KIAA1279 KIF1-binding protein yes no 3 0.036331 19.754 By MS/MS By matching By matching 2 2 1 0.78316 0.82779 28.651 5 Median 0.85598 0.86031 9.755 2 0 Median 0.71383 0.67666 50.583 2 0 Median 0.7418 0.82779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13192000 7255200 5937100 7859400 4337700 3521700 2886300 1758200 1128100 2446600 1159300 1287300 0 0 0 0 0 0 0 0 0 37657 323 39570 199474;199475;199476;199477;199478 202706 202706 1 VSYLVFDEADR RLIDHVKKKATNLQRVSYLVFDEADRMFDM NLQRVSYLVFDEADRMFDMGFEYQVRSIAS R V S D R M 1 1 0 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 1 2 0 0 11 0 1312.6299 Q86XP3;A0A0A0MSJ0 Q86XP3 401 411 DDX42 ATP-dependent RNA helicase DDX42 yes no 2 0.0001809 85.29 By matching By MS/MS By MS/MS By MS/MS 1 3 2 1 1.1632 1.1334 13.167 7 Median NaN NaN NaN 0 0 Median 1.5997 1.449 NaN 1 0 Median 1.0225 1.1247 8.3826 3 0 Median 1.3533 1.15 2.0481 2 0 Median 0.90295 0.95442 NaN 1 1 Median NaN NaN NaN 0 0 Median 21304000 9557100 11747000 0 0 0 413260 152040 261210 15895000 7078400 8816200 1700100 686690 1013400 3296200 1640000 1656200 0 0 0 37658 3302 39571 199479;199480;199481;199482;199483;199484;199485 202707;202708;202709;202710;202711;202712 202707 5 VSYVSGSSLLTTHPQPMDQASLK ALGSSNWIIQSHYEKVSYVSGSSLLTTHPQ LLTTHPQPMDQASLKNSDVLVLTGLTQIPT K V S L K N 1 0 0 1 0 2 0 1 1 0 3 1 1 0 2 5 2 0 1 2 0 0 23 0 2445.221 Q9NV88;G3XAN1;H0YBH8 Q9NV88 234 256 INTS9 Integrator complex subunit 9 yes no 3 0.0001068 45.784 By MS/MS 2 0.81134 0.83506 8.4338 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81134 0.83506 8.4338 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15781000 8400200 7380500 0 0 0 0 0 0 15781000 8400200 7380500 0 0 0 0 0 0 0 0 0 37659 4126 39572 199486;199487 202713;202714 202713 2 VSYYENVIK YLDNMKAPWELLELRVSYYENVIKAMLESI ELLELRVSYYENVIKAMLESIGVPLEKLKF R V S I K A 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 2 2 0 0 9 0 1113.5706 P54577;A0A0C4DGZ5 P54577 94 102 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.012642 60.91 By MS/MS By MS/MS By MS/MS 1 1 1 1.4779 1.2383 22.351 3 Plateau 1.5797 1.4675 NaN 1 1 Median 1.2494 1.0449 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.126 0.9628 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56140000 23146000 32995000 39372000 15703000 23669000 15278000 6781900 8496100 0 0 0 1490000 660610 829410 0 0 0 0 0 0 37660 2482 39573 199488;199489;199490 202715;202716;202717 202716 3 VTAAYDR TSHLTREEIQSAVTKVTAAYDRQQLWKANV EIQSAVTKVTAAYDRQQLWKANVGFVIQLQ K V T D R Q 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 7 0 794.39227 F2Z2E2;Q86VI3 F2Z2E2 674 680 IQGAP3 Ras GTPase-activating-like protein IQGAP3 yes no 2 0.070301 46.351 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 534240 0 534240 0 0 0 534240 0 534240 0 0 0 0 0 0 0 0 0 0 0 0 37661 989 39574 199491 202718 202718 1 VTADVINAAEK ELQDCEGLIVRSATKVTADVINAAEKLQVV SATKVTADVINAAEKLQVVGRAGTGVDNVD K V T E K L 3 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1129.5979 A0A286YF22;O43175;A0A2C9F2M7;A0A286YFA2;A0A286YFL2;A0A286YFM8;A0A286YER3;A0A286YFC8;A0A286YFB2;A0A286YF34 A0A286YF22 59 69 PHGDH D-3-phosphoglycerate dehydrogenase yes no 2 0.00011196 123.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 3 1.3114 1.0952 47.753 9 Median 0.92143 0.8567 8.9597 2 0 Median 0.84403 0.70886 63.116 2 0 Median NaN NaN NaN 0 0 Median 1.0423 0.89438 NaN 1 0 Median 2.1865 2.0866 NaN 1 0 Median 1.6301 1.3698 32.598 3 0 Median 126900000 54688000 72210000 57348000 26816000 30532000 42435000 17864000 24571000 0 0 0 3721200 1810200 1911000 10353000 3212700 7139800 13040000 4984500 8055300 37662 351 39575 199492;199493;199494;199495;199496;199497;199498;199499;199500 202719;202720;202721;202722;202723;202724;202725;202726;202727;202728;202729;202730 202720 12 VTADVTSAVMGNPVTR ______________________________ TADVTSAVMGNPVTREFDVGRHIASGGNGL K V T T R E 2 1 1 1 0 0 0 1 0 0 0 0 1 0 1 1 3 0 0 4 0 0 16 0 1616.8192 F8VSC5;A0A0U1RQQ9;Q6P3W7 F8VSC5 15 30 SCYL2 SCY1-like protein 2 yes no 2 1.932E-07 85.288 By MS/MS 1 0.66965 0.71347 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66965 0.71347 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6267600 3651000 2616600 0 0 0 0 0 0 6267600 3651000 2616600 0 0 0 0 0 0 0 0 0 37663 304 39576 199501 202731 202731 1 VTAEEFK VKNMFTNQDRNGDGKVTAEEFKLKDQEAKH QDRNGDGKVTAEEFKLKDQEAKHDEL____ K V T F K L 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 7 0 822.41233 O95302;Q75LS8 O95302 553 559 FKBP9;FKBP9P1 Peptidyl-prolyl cis-trans isomerase FKBP9;Putative FK506-binding protein 9-like protein yes no 2 0.016334 68.915 By MS/MS 1 1.7337 1.4909 NaN 1 Median NaN NaN NaN 0 0 Median 1.7337 1.4909 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3129500 1081000 2048500 0 0 0 3129500 1081000 2048500 0 0 0 0 0 0 0 0 0 0 0 0 37664 1763 39577 199502 202732;202733 202732 2 VTAEVVLAHLGGGSTSR EDVKRTVDLSSHLAKVTAEVVLAHLGGGST AEVVLAHLGGGSTSRATSFLLALEPELEAR K V T S R A 2 1 0 0 0 0 1 3 1 0 2 0 0 0 0 2 2 0 0 3 0 0 17 0 1652.8846 P04843;F8WF32 P04843 49 65 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 2;3 1.6863E-24 139.89 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 5 2 2 2 1 2 1.2535 1.1725 58.737 14 Median 1.2201 1.1936 18.146 5 1 Median 1.3979 1.1898 16.79 2 0 Median 1.2197 1.2346 9.8244 2 0 Median 1.6847 1.4086 0.73596 2 0 Median 0.18949 0.19088 NaN 1 0 Median 0.7359 0.59673 74.386 2 0 Median 165640000 73195000 92446000 80482000 35114000 45368000 21121000 9341700 11780000 54209000 23338000 30870000 4648000 1827000 2821000 2377700 1873600 504140 2803400 1700100 1103200 37665 1853 39578 199503;199504;199505;199506;199507;199508;199509;199510;199511;199512;199513;199514;199515;199516 202734;202735;202736;202737;202738;202739;202740;202741;202742;202743;202744;202745 202736 12 VTAGISFAIPSDR VSLQDGEVIGVNTMKVTAGISFAIPSDRLR MKVTAGISFAIPSDRLREFLHRGEKKNSSS K V T D R L 2 1 0 1 0 0 0 1 0 2 0 0 0 1 1 2 1 0 0 1 0 0 13 0 1332.7038 A0A0C4DG44;O43464;P83110 A0A0C4DG44 322 334 HTRA2;HTRA3 Serine protease HTRA2, mitochondrial;Serine protease HTRA3 yes no 2 6.6201E-07 104.79 By MS/MS By matching By matching 1 1 1 1.0268 0.96195 20.352 3 Median 1.0268 0.96195 NaN 1 0 Median 1.3318 1.1273 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88365 0.75271 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7947500 4394900 3552600 6505500 3555200 2950300 1366200 799250 566930 0 0 0 75769 40409 35359 0 0 0 0 0 0 37666 234 39579 199517;199518;199519 202746;202747 202747 2 VTAIDFR AKQAFVQRDNARTGRVTAIDFRDIMVTIRP RDNARTGRVTAIDFRDIMVTIRPHVLTPFV R V T F R D 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 7 0 820.4443 Q9UJS0 Q9UJS0 178 184 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 0.02008 60.76 By MS/MS 1 0.97284 0.92361 NaN 1 Median 0.97284 0.92361 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12279000 6058400 6220900 12279000 6058400 6220900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37667 4297 39580 199520 202748;202749 202748 2 VTAIHIDPATHR SILGSAKHGLYLPTRVTAIHIDPATHRQKL PTRVTAIHIDPATHRQKLYTLQDKAQVADV R V T H R Q 2 1 0 1 0 0 0 0 2 2 0 0 0 0 1 0 2 0 0 1 0 0 12 0 1329.7153 P49327;A0A0U1RQF0 P49327 1052 1063 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 1.4802E-06 116.71 By MS/MS By MS/MS By matching By MS/MS By matching By matching 5 5 1 1 1 1 1.0947 1.0235 16.793 13 Median 0.85865 0.82496 5.8361 4 0 Median 1.2566 1.0606 10.749 5 0 Median 0.92194 1.0235 NaN 1 0 Median 1.3066 1.1498 NaN 1 0 Median 1.2928 1.3534 NaN 1 0 Median 1.0947 0.91096 NaN 1 0 Median 212380000 96815000 115560000 74199000 40181000 34018000 127070000 52040000 75031000 3060200 1583700 1476500 1213200 400710 812460 4604600 1671800 2932700 2232900 938440 1294400 37668 2377 39581 199521;199522;199523;199524;199525;199526;199527;199528;199529;199530;199531;199532;199533;199534 202750;202751;202752;202753;202754;202755;202756;202757;202758;202759;202760;202761;202762;202763;202764;202765;202766;202767 202758 18 VTAPDVDLHLK GPSLKMPSLEISAPKVTAPDVDLHLKAPKI SAPKVTAPDVDLHLKAPKIGFSGPKLEGGE K V T L K A 1 0 0 2 0 0 0 0 1 0 2 1 0 0 1 0 1 0 0 2 0 0 11 0 1206.6608 Q09666 Q09666 4916 4926 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 0.00015157 90.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 4 2 4 7 2 1 1.0603 1.0372 22.665 20 Median 0.9265 0.9294 16.165 4 0 Median 1.1304 1.003 10.679 2 0 Median 0.95 1.0328 20.075 4 0 Median 1.0895 1.0232 32.194 7 0 Median 1.0196 1.076 3.2729 2 0 Median 1.5319 1.32 NaN 1 0 Median 181050000 88668000 92380000 48451000 24298000 24153000 32450000 15466000 16984000 63903000 32029000 31874000 30361000 14149000 16212000 5414300 2580300 2834000 468910 146130 322780 37669 2749 39582 199535;199536;199537;199538;199539;199540;199541;199542;199543;199544;199545;199546;199547;199548;199549;199550;199551;199552;199553;199554 202768;202769;202770;202771;202772;202773;202774;202775;202776;202777;202778;202779;202780;202781;202782;202783;202784;202785;202786;202787;202788 202783 21 VTAPDVDLHLKAPK GPSLKMPSLEISAPKVTAPDVDLHLKAPKI KVTAPDVDLHLKAPKIGFSGPKLEGGEVDL K V T P K I 2 0 0 2 0 0 0 0 1 0 2 2 0 0 2 0 1 0 0 2 0 0 14 1 1502.8457 Q09666 Q09666 4916 4929 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2;3 7.0991E-05 83.397 By MS/MS By MS/MS 2 1 0.88156 0.99758 14.021 3 Median 0.85163 0.92757 18.917 2 0 Median NaN NaN NaN 0 0 Median 0.88156 0.99758 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60319000 32566000 27753000 32644000 18597000 14047000 0 0 0 27675000 13969000 13706000 0 0 0 0 0 0 0 0 0 37670 2749 39583 199555;199556;199557 202789;202790;202791;202792;202793 202792 5 VTAPPEAEYSGLVR AQNVGEGGAYEAELRVTAPPEAEYSGLVRH RVTAPPEAEYSGLVRHPGNFSSLSCDYFAV R V T V R H 2 1 0 0 0 0 2 1 0 0 1 0 0 0 2 1 1 0 1 2 0 0 14 0 1487.762 P08648 P08648 695 708 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain yes yes 2 4.287E-08 104.79 By MS/MS By matching 1 1 0.82875 0.75604 9.1037 2 Median 0.73507 0.7089 NaN 1 0 Median 0.93435 0.80631 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10244000 5755100 4489300 8699300 5011000 3688300 1545100 744140 800980 0 0 0 0 0 0 0 0 0 0 0 0 37671 1906 39584 199558;199559 202794 202794 1 VTAQGPGLEPSGNIANK PFEVYVDKSQGDASKVTAQGPGLEPSGNIA AQGPGLEPSGNIANKTTYFEIFTAGAGTGE K V T N K T 2 0 2 0 0 1 1 3 0 1 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1651.8529 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 384 400 FLNA Filamin-A no no 2;3 2.2804E-18 172.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 6 2 2 1 1 0.72685 0.66292 15.405 19 Median 0.80956 0.79028 11.335 7 0 Median 0.72734 0.64818 5.5983 6 0 Median 0.65503 0.7107 16 2 0 Median 0.69655 0.64576 0.89774 2 0 Median 0.99938 1.0461 NaN 1 0 Median 0.65829 0.56397 NaN 1 0 Median 855760000 483120000 372640000 268560000 146640000 121930000 497200000 287020000 210180000 65731000 36998000 28733000 10051000 5568100 4482900 10232000 4625800 5606300 3983800 2268800 1715000 37672 2088;3120 39585 199560;199561;199562;199563;199564;199565;199566;199567;199568;199569;199570;199571;199572;199573;199574;199575;199576;199577;199578 202795;202796;202797;202798;202799;202800;202801;202802;202803;202804;202805;202806;202807;202808;202809;202810;202811;202812;202813;202814;202815;202816;202817;202818;202819;202820;202821;202822;202823;202824;202825;202826;202827;202828;202829;202830 202813 36 VTAQSIIPGILER LYTLGTVVVDYRGYRVTAQSIIPGILERDQ YRVTAQSIIPGILERDQEQSVIYGSIDFGK R V T E R D 1 1 0 0 0 1 1 1 0 3 1 0 0 0 1 1 1 0 0 1 0 0 13 0 1395.8086 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 482 494 CLUH Clustered mitochondria protein homolog yes no 2 0.025142 28.204 By matching By MS/MS 1 1 0.96525 0.89916 3.1776 2 Median 0.92642 0.91959 NaN 1 0 Median 1.0057 0.87918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3681200 2049900 1631300 2549100 1469200 1079900 1132100 580680 551440 0 0 0 0 0 0 0 0 0 0 0 0 37673 1651 39586 199579;199580 202831 202831 1 VTARPSQPPLPR RPPSQPNTQDKTPSKVTARPSQPPLPRRST PSKVTARPSQPPLPRRSTRLKT________ K V T P R R 1 2 0 0 0 1 0 0 0 0 1 0 0 0 4 1 1 0 0 1 0 0 12 1 1317.7517 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3 H0Y5D5 802 813 CIZ1 Cip1-interacting zinc finger protein yes no 3 0.00033886 57.567 By MS/MS By matching 1 1 0.54563 0.64238 12.59 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48319 0.58766 NaN 1 0 Median 0.61613 0.70219 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3621000 2219200 1401800 0 0 0 0 0 0 3092800 1896600 1196200 528200 322530 205660 0 0 0 0 0 0 37674 1028 39587 199581;199582 202832;202833 202832 2 VTASAPGPAAPDPPGTGASGATVVSGSASGPAAPGK VDSAGAEVTSALLSRVTASAPGPAAPDPPG TVVSGSASGPAAPGKVGSVAVEDQPDVSAV R V T G K V 9 0 0 1 0 0 0 7 0 0 0 1 0 0 7 5 3 0 0 3 0 0 36 0 3014.4945 Q15542 Q15542 151 186 TAF5 Transcription initiation factor TFIID subunit 5 yes yes 3 0.0017775 30.017 By MS/MS 1 0.33966 0.37409 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33966 0.37409 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5628600 4509200 1119400 0 0 0 0 0 0 5628600 4509200 1119400 0 0 0 0 0 0 0 0 0 37675 2957 39588 199583 202834 202834 1 VTASGPGLSSYGVPASLPVDFAIDAR SPFKVKVLPTYDASKVTASGPGLSSYGVPA GVPASLPVDFAIDARDAGEGLLAVQITDQE K V T A R D 4 1 0 2 0 0 0 3 0 1 2 0 0 1 3 4 1 0 1 3 0 0 26 0 2546.3017 O75369;E7EN95 O75369 1520 1545 FLNB Filamin-B yes no 2;3 0.010822 17.794 By MS/MS By MS/MS 4 3 0.66828 0.60698 35.897 7 Median 0.62139 0.62217 49.744 4 1 Median 0.70859 0.57916 3.5858 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10784000 5980400 4803900 5450800 3143700 2307000 5333500 2836600 2496900 0 0 0 0 0 0 0 0 0 0 0 0 37676 1664 39589 199584;199585;199586;199587;199588;199589;199590 202835;202836;202837 202837 3 VTASPQSLCALR FSPGQSFPASQAHLRVTASPQSLCALRAVD HLRVTASPQSLCALRAVDQSVLLMRPEAEL R V T L R A 2 1 0 0 1 1 0 0 0 0 2 0 0 0 1 2 1 0 0 1 0 0 12 0 1301.6762 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 587 598 yes yes 2 0.023134 44.318 By MS/MS 3 0.70918 0.61708 116.88 3 Median NaN NaN NaN 0 0 Median 0.70918 0.61708 116.88 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7300700 4574300 2726400 0 0 0 7300700 4574300 2726400 0 0 0 0 0 0 0 0 0 0 0 0 + 37677 734 39590 199591;199592;199593 202838;202839 202838 2 VTATDLDEPDTLHTR FTVPENCRSGTSVGKVTATDLDEPDTLHTR VTATDLDEPDTLHTRLKYKILQQIPDHPKH K V T T R L 1 1 0 3 0 0 1 0 1 0 2 0 0 0 1 0 4 0 0 1 0 0 15 0 1682.8111 Q08554 Q08554 264 278 DSC1 Desmocollin-1 yes yes 3 3.7645E-11 117.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 6 3 0.1575 0.14732 93.985 11 Median 0.36224 0.35796 NaN 1 1 Median 0.088494 0.0724 NaN 1 1 Median 0.1575 0.16692 NaN 1 1 Median 0.067864 0.059588 83.106 5 5 Median 0.18373 0.19153 85.576 3 3 Median NaN NaN NaN 0 0 Median 48712000 39840000 8872100 7876400 5802300 2074000 8846800 7894700 952080 7672400 6920400 751910 9912500 8908500 1004000 14404000 10314000 4090100 0 0 0 37678 2741 39591 199594;199595;199596;199597;199598;199599;199600;199601;199602;199603;199604;199605;199606 202840;202841;202842;202843;202844;202845;202846;202847;202848;202849;202850;202851;202852 202846 13 VTAVIPCFPYAR LLIMINACKIASASRVTAVIPCFPYARQDK ASRVTAVIPCFPYARQDKKDKGFFDIPVDN R V T A R Q 2 1 0 0 1 0 0 0 0 1 0 0 0 1 2 0 1 0 1 2 0 0 12 0 1392.7224 B1ALA9;P60891;A0A2R8Y7H4;A0A0B4J207;P21108;B1ALA7;P11908;A6NMS2;D3YTJ7 B1ALA9 85 96 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 2 0.065231 40.882 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37679 571;1972 39592 199607 202853 202853 1 VTAVPTLLK PYWKDPNNDFRKNLKVTAVPTLLKYGTPQK FRKNLKVTAVPTLLKYGTPQKLVESECLQA K V T L K Y 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 2 0 0 9 0 940.59572 Q9BRA2;I3L2R6 Q9BRA2 90 98 TXNDC17 Thioredoxin domain-containing protein 17 yes no 2 0.00071783 102.51 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 1.0506 0.89958 8.9058 6 Median 1.0453 0.93371 NaN 1 0 Median 1.0414 0.85523 1.8845 2 0 Median 1.0324 1.0198 3.777 2 0 Median 1.0559 0.85273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 556950000 267190000 289760000 214190000 102580000 111610000 330010000 158380000 171630000 8417600 4005400 4412200 4332300 2230500 2101800 0 0 0 0 0 0 37680 3793 39593 199608;199609;199610;199611;199612;199613 202854;202855;202856;202857;202858;202859;202860;202861;202862;202863;202864;202865 202859 12 VTAVVTLR DVAVIGVPDMTWGQRVTAVVTLREGHSLSH DMTWGQRVTAVVTLREGHSLSHRELKEWAR R V T L R E 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 3 0 0 8 0 857.53345 A0A3B3ISK9;Q4G176;H0YGJ0;F5H5A1 A0A3B3ISK9 586 593 ACSF3 Acyl-CoA synthetase family member 3, mitochondrial yes no 2 0.011376 57.047 By MS/MS By MS/MS By matching 2 1 1 1.0921 1.0628 37.731 4 Median 0.74224 0.74065 22.347 2 0 Median 1.4963 1.3023 NaN 1 0 Median 1.3762 1.4286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6372000 3031500 3340500 4362300 2160000 2202300 1330300 543910 786360 679460 327620 351840 0 0 0 0 0 0 0 0 0 37681 425 39594 199614;199615;199616;199617 202866;202867 202867 2 VTAYTVDVTGR DLGETQSRTITVTRRVTAYTVDVTGREGAK VTRRVTAYTVDVTGREGAKDIDISSPEFKI R V T G R E 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 1 3 0 0 11 0 1180.6088 Q09666 Q09666 157 167 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.00015613 114.97 By MS/MS By MS/MS By MS/MS 1 2 2 1.2403 1.0316 21.348 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3023 1.369 NaN 1 0 Median 1.055 0.92331 8.6339 2 0 Median NaN NaN NaN 0 0 Median 1.4611 1.2066 22.163 2 0 Median 32909000 14939000 17970000 0 0 0 0 0 0 17815000 8006700 9808100 11878000 5522100 6356200 0 0 0 3215800 1409700 1806100 37682 2749 39595 199618;199619;199620;199621;199622 202868;202869;202870;202871;202872;202873 202868 6 VTCLESGLR TQAATQVVLNVPETRVTCLESGLRVASEDS NVPETRVTCLESGLRVASEDSGLSTCTVGL R V T L R V 0 1 0 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 9 0 1033.5226 O75439;G3V0E4;F8WAZ6;F8WEA6;F8WBE1 O75439 60 68 PMPCB Mitochondrial-processing peptidase subunit beta yes no 2 0.043182 51.066 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37683 1673 39596 199623 202874 202874 1 VTDAIVLLDR SVLETVEVLQKEGLKVTDAIVLLDREQGGK KEGLKVTDAIVLLDREQGGKDKLQAHGIRL K V T D R E 1 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1113.6394 P11172;E9PFD2 P11172 146 155 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase yes no 2 0.00041321 91.584 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 2 1.1165 0.97291 16.47 7 Median 1.1195 1.0695 13.382 2 0 Median 1.209 1.0403 NaN 1 0 Median 1.378 1.3832 NaN 1 0 Median 0.97179 0.85363 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0971 0.93318 1.4548 2 0 Median 18374000 8454200 9919400 11548000 5583600 5964200 2317100 1033900 1283300 3738800 1458800 2280000 222030 114710 107320 0 0 0 547970 263280 284690 37684 1953 39597 199624;199625;199626;199627;199628;199629;199630 202875;202876 202875 2 VTDALNATR VGGTSDVEVNEKKDRVTDALNATRAAVEEG NEKKDRVTDALNATRAAVEEGIVLGGGCAL R V T T R A 2 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 9 0 959.50361 P10809 P10809 421 429 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 7.4215E-07 160.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 1.3332 1.1827 8.1349 9 Median 1.1747 1.0967 NaN 1 0 Median 1.4174 1.2061 2.7698 2 0 Median 1.0779 1.1034 NaN 1 0 Median 1.4366 1.2243 7.6372 2 0 Median 1.2706 1.2733 NaN 1 0 Median 1.4512 1.2222 16.201 2 0 Median 309690000 130410000 179280000 108670000 49412000 59262000 182990000 73518000 109470000 6096600 2959900 3136800 2067200 789570 1277700 4349800 1536700 2813200 5516600 2195000 3321600 37685 1947 39598 199631;199632;199633;199634;199635;199636;199637;199638;199639 202877;202878;202879;202880;202881;202882;202883;202884;202885;202886;202887;202888;202889;202890;202891;202892;202893 202884 17 VTDDLVCLVYK VVLKYRHSDGNLCVKVTDDLVCLVYKTDQA LCVKVTDDLVCLVYKTDQAQDVKKIEKFHS K V T Y K T 0 0 0 2 1 0 0 0 0 0 2 1 0 0 0 0 1 0 1 3 0 0 11 0 1323.6744 P49458 P49458 42 52 SRP9 Signal recognition particle 9 kDa protein yes yes 2 0.00033534 110.76 By MS/MS By MS/MS By matching 2 3 1 1.1654 1.0427 13.413 6 Median NaN NaN NaN 0 0 Median 1.3217 1.1113 9.8563 2 0 Median 1.004 1.0205 4.9966 3 2 Median NaN NaN NaN 0 0 Median 1.5426 1.3797 NaN 1 0 Median NaN NaN NaN 0 0 Median 16610000 8080900 8529200 0 0 0 1372600 612640 759970 14323000 7147000 7175800 0 0 0 914690 321250 593430 0 0 0 37686 2384 39599 199640;199641;199642;199643;199644;199645 202894;202895;202896 202895 3 VTDEMFLEALNSK GIIAILDDACMNVGKVTDEMFLEALNSKLG GKVTDEMFLEALNSKLGKHAHFSSRKLCAS K V T S K L 1 0 1 1 0 0 2 0 0 0 2 1 1 1 0 1 1 0 0 1 0 0 13 0 1495.7228 K7EIG7;O94832;J3QRN6 K7EIG7 378 390 MYO1D Unconventional myosin-Id yes no 2 0.016991 32.523 By MS/MS 1 0.90478 0.98343 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90478 0.98343 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2713800 1394600 1319200 0 0 0 0 0 0 2713800 1394600 1319200 0 0 0 0 0 0 0 0 0 37687 1359 39600 199646 202897;202898 202897 2 VTDFGDKVEDPTFLNQLQSGVNR TNVAKQCYERGEKPKVTDFGDKVEDPTFLN EDPTFLNQLQSGVNRWIREIQKVTKLDRDP K V T N R W 0 1 2 3 0 2 1 2 0 0 2 1 0 2 1 1 2 0 0 3 0 0 23 1 2578.2663 Q14204 Q14204 229 251 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 6.1046E-37 157.28 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.0761 1.0023 10.57 5 Median 0.873 0.92982 NaN 1 0 Median 1.083 1.0024 NaN 1 0 Median 0.8455 0.98037 NaN 1 0 Median 1.0761 1.0023 NaN 1 0 Median 1.0796 1.2265 NaN 1 1 Median NaN NaN NaN 0 0 Median 132870000 67111000 65755000 106580000 54798000 51783000 12818000 5896600 6921700 11308000 5534000 5774100 169000 72787 96218 1989700 809760 1179900 0 0 0 37688 2865 39601 199647;199648;199649;199650;199651 202899;202900;202901;202902;202903;202904 202899 6 VTDISGGCGAMYEIK TQILKEKFPRATAIKVTDISGGCGAMYEIK VTDISGGCGAMYEIKIESEEFKEKRTVQQH K V T I K I 1 0 0 1 1 0 1 3 0 2 0 1 1 0 0 1 1 0 1 1 0 0 15 0 1599.7273 Q53S33 Q53S33 52 66 BOLA3 BolA-like protein 3 yes yes 2 0.028768 25.437 By MS/MS By matching 1 1 1.4507 1.3339 4.6789 2 Median NaN NaN NaN 0 0 Median 1.6576 1.3787 NaN 1 0 Median 1.2696 1.2905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1771300 800440 970890 0 0 0 841880 319390 522490 929450 481050 448400 0 0 0 0 0 0 0 0 0 37689 3034 39602 199652;199653 202905 202905 1 VTDKLTPIHDR GADSRTTTGSYIANRVTDKLTPIHDRIFCC IANRVTDKLTPIHDRIFCCRSGSAADTQAV R V T D R I 0 1 0 2 0 0 0 0 1 1 1 1 0 0 1 0 2 0 0 1 0 0 11 1 1293.7041 P28072;I3L3X7;A0A087X2I4 P28072 64 74 PSMB6 Proteasome subunit beta type-6;Proteasome subunit beta type yes no 2;3 0.00020034 73.067 By MS/MS By MS/MS 1 6 0.96601 1.0036 24.992 7 Median 0.96601 1.0103 NaN 1 0 Median 0.94971 0.86513 26.252 6 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24048000 12313000 11735000 8759500 4499500 4260000 15289000 7813700 7474900 0 0 0 0 0 0 0 0 0 0 0 0 37690 2161 39603 199654;199655;199656;199657;199658;199659;199660 202906;202907;202908;202909;202910;202911;202912 202906 7 VTDKVLTANSNPSSPSAAK DLGCKEGADKRKRSRVTDKVLTANSNPSSP VLTANSNPSSPSAAKRRRT___________ R V T A K R 3 0 2 1 0 0 0 0 0 0 1 2 0 0 2 4 2 0 0 2 0 0 19 1 1885.9745 Q9NV56 Q9NV56 182 200 MRGBP MRG/MORF4L-binding protein yes yes 3 0.0099352 22.646 By matching By MS/MS 1 2 0.80134 0.813 20.055 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80134 0.813 NaN 1 0 Median 0.88006 0.78218 28.186 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3862100 1940700 1921500 0 0 0 0 0 0 1612900 841380 771480 2249300 1099300 1150000 0 0 0 0 0 0 37691 4123 39604 199661;199662;199663 202913;202914;202915 202915 3 VTDLLGGLFSK SDNAFIRASRALTDKVTDLLGGLFSKTEMS LTDKVTDLLGGLFSKTEMSEVLTEILRVDP K V T S K T 0 0 0 1 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 O43615;M0QXU7 O43615 283 293 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes no 2 0.0033293 50.04 By MS/MS By matching By matching By MS/MS 3 2 1 3 1.327 1.1483 12.462 9 Median 1.327 1.2677 8.2524 3 0 Median 1.1336 0.99048 5.6637 2 0 Median NaN NaN NaN 0 0 Median 1.4004 1.198 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4162 1.1483 4.5342 3 0 Plateau 57660000 25710000 31950000 11233000 5147100 6085500 29087000 13167000 15920000 0 0 0 198240 99280 98956 0 0 0 17142000 7296200 9845500 37692 1577 39605 199664;199665;199666;199667;199668;199669;199670;199671;199672 202916;202917;202918 202916 3 VTDSTGQQVVGELLK IDISGVLTFFDLDARVTDSTGQQVVGELLK VTDSTGQQVVGELLKLERRDVWDMKWAKDN R V T L K L 0 0 0 1 0 2 1 2 0 0 2 1 0 0 0 1 2 0 0 3 0 0 15 0 1572.8359 Q9P2L0;H0Y6C0;F8WB94 Q9P2L0 576 590 WDR35 WD repeat-containing protein 35 yes no 2 0.0022051 38.238 By MS/MS 1 0.75032 0.81532 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75032 0.81532 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2977100 1720000 1257200 0 0 0 0 0 0 2977100 1720000 1257200 0 0 0 0 0 0 0 0 0 37693 4225 39606 199673 202919 202919 1 VTEAEIVPMGK NSSDMSAHVTSPSGRVTEAEIVPMGKNSHC PSGRVTEAEIVPMGKNSHCVRFVPQEMGVH R V T G K N 1 0 0 0 0 0 2 1 0 1 0 1 1 0 1 0 1 0 0 2 0 0 11 0 1172.6111 O75369;E7EN95;H7C5L4 O75369 2140 2150 FLNB Filamin-B yes no 2 0.00012227 147.2 By MS/MS By MS/MS 2 2 1.0451 0.99635 11.049 4 Median 1.0451 1.0278 9.1728 2 1 Median 1.0496 0.93451 13.84 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59969000 29177000 30792000 18746000 9456000 9289900 41224000 19721000 21502000 0 0 0 0 0 0 0 0 0 0 0 0 37694 1664 39607 199674;199675;199676;199677 202920;202921;202922;202923 202922 4 VTEALRPFHER QIPFLAEGIRIHGDKVTEALRPFHERMEAC HGDKVTEALRPFHERMEACFKQLKEKVEKE K V T E R M 1 2 0 0 0 0 2 0 1 0 1 0 0 1 1 0 1 0 0 1 0 0 11 1 1353.7153 A0A096LNH6;Q14185 A0A096LNH6 1607 1617 DOCK1 Dedicator of cytokinesis protein 1 yes no 3 4.5556E-05 84.658 By MS/MS 1 1.0666 0.96589 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0666 0.96589 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1593100 523130 1069900 0 0 0 0 0 0 0 0 0 1593100 523130 1069900 0 0 0 0 0 0 37695 140 39608 199678 202924 202924 1 VTEDEEPPTEQDKR TYKDCMLMSHLEEPKVTEDEEPPTEQDKRK KVTEDEEPPTEQDKRKKMLALKDPVHTVSL K V T K R K 0 1 0 2 0 1 4 0 0 0 0 1 0 0 2 0 2 0 0 1 0 0 14 1 1671.7588 Q9UI26;E7EMB7 Q9UI26 905 918 IPO11 Importin-11 yes no 3 0.030233 23.842 By matching By MS/MS 1 1 0.76889 0.76227 16.628 2 Median 0.82973 0.85738 NaN 1 0 Median 0.7125 0.67771 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2169100 1341900 827210 628340 398430 229910 1540800 943480 597310 0 0 0 0 0 0 0 0 0 0 0 0 37696 4288 39609 199679;199680 202925 202925 0 VTEDGEQEQIPELPDPSLEMGILPR ICFTTVQRVASEAQKVTEDGEQEQIPELPD PELPDPSLEMGILPREIRKLVERRKQVKQL K V T P R E 0 1 0 2 0 2 5 2 0 2 3 0 1 0 4 1 1 0 0 1 0 0 25 0 2791.3586 A0A087WU64;A6NMQ1;P09884 A0A087WU64 888 912 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.035301 18.904 By MS/MS 1 0.44457 0.44618 NaN 1 Median 0.44457 0.44618 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1875200 1331400 543800 1875200 1331400 543800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37697 26 39610 199681 202926 202926 1 VTEEEINVLK SPESMDNYSHFHELRVTEEEINVLKQDLQN FHELRVTEEEINVLKQDLQNALEESERNKE R V T L K Q 0 0 1 0 0 0 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1172.6289 Q9P0K7 Q9P0K7 527 536 RAI14 Ankycorbin yes yes 2 0.00032996 124.98 By MS/MS 1 1.2379 1.0695 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2379 1.0695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4885200 2154900 2730300 0 0 0 0 0 0 0 0 0 4885200 2154900 2730300 0 0 0 0 0 0 37698 4204 39611 199682 202927;202928 202928 2 VTEELLFELFHQAGPVIK AEADRTLFVGNLETKVTEELLFELFHQAGP ELLFELFHQAGPVIKVKIPKDKDGKPKQFA K V T I K V 1 0 0 0 0 1 3 1 1 1 3 1 0 2 1 0 1 0 0 2 0 0 18 0 2069.1197 I3L521;F5GXV8;F5GY08;J3KPD3;Q9Y580;F5H606 I3L521 18 35 RBM7 RNA-binding protein 7 yes no 3 1.415E-06 66.965 By MS/MS 1 1.2622 1.0612 NaN 1 Median NaN NaN NaN 0 0 Median 1.2622 1.0612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7996600 3531900 4464700 0 0 0 7996600 3531900 4464700 0 0 0 0 0 0 0 0 0 0 0 0 37699 1007 39612 199683 202929 202929 1 VTEELLTDNR LNFKMGNRHKFTGKKVTEELLTDNRYLLLV FTGKKVTEELLTDNRYLLLVLMDAERAWSY K V T N R Y 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 10 0 1188.5986 Q9UHB9 Q9UHB9 113 122 SRP68 Signal recognition particle subunit SRP68 yes yes 2 6.4633E-18 159.37 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0797 0.96684 8.7649 4 Median 1.0474 0.99947 NaN 1 1 Median 1.0807 0.93528 NaN 1 0 Median 1.0794 1.1016 NaN 1 1 Median 1.08 0.90239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28200000 13383000 14817000 9719700 4606500 5113200 6771700 3213600 3558100 9360300 4490700 4869600 2348500 1072000 1276500 0 0 0 0 0 0 37700 4274 39613 199684;199685;199686;199687 202930;202931;202932;202933;202934;202935 202931 6 VTEETVYTCTGHPLK RALNILQSTNMAFGKVTEETVYTCTGHPLK VTEETVYTCTGHPLKSDIANILDWMLNQDF K V T L K S 0 0 0 0 1 0 2 1 1 0 1 1 0 0 1 0 4 0 1 2 0 0 15 0 1733.8294 P40937 P40937 230 244 RFC5 Replication factor C subunit 5 yes yes 3 0.026961 17.917 By MS/MS 1 0.86999 0.83176 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86999 0.83176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2983100 1667600 1315400 0 0 0 0 0 0 2983100 1667600 1315400 0 0 0 0 0 0 0 0 0 37701 2293 39614 199688 202936 202936 1 VTEFGGELHEDGGK RNRSKTALYVTPLDRVTEFGGELHEDGGKL RVTEFGGELHEDGGKLFCTSCNVVLNHVRK R V T G K L 0 0 0 1 0 0 3 4 1 0 1 1 0 1 0 0 1 0 0 1 0 0 14 0 1473.6736 Q9UFW8;C9JUJ0 Q9UFW8 27 40 CGGBP1 CGG triplet repeat-binding protein 1 yes no 2;3 1.305E-05 126.67 By MS/MS By MS/MS 3 2 0.98616 0.91947 23.672 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98616 0.92456 24.969 3 0 Median 0.9676 0.80198 5.4046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50650000 23958000 26692000 0 0 0 0 0 0 40726000 19115000 21610000 9924300 4843100 5081200 0 0 0 0 0 0 37702 4260 39615 199689;199690;199691;199692;199693 202937;202938;202939;202940;202941;202942;202943;202944 202938 8 VTEGGEPYR HVYGIPEHADNLRLKVTEGGEPYRLYNLDV DNLRLKVTEGGEPYRLYNLDVFQYELYNPM K V T Y R L 0 1 0 0 0 0 2 2 0 0 0 0 0 0 1 0 1 0 1 1 0 0 9 0 1006.472 E9PKU7;Q14697;F5H6X6 Q14697 270 278 GANAB Neutral alpha-glucosidase AB no no 2 0.00057143 113.26 By MS/MS By MS/MS 2 3 0.94429 0.82315 6.5063 5 Median 0.80113 0.77631 3.0595 2 0 Median 1.0974 0.90215 4.8084 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92080000 43954000 48126000 10921000 5876400 5044500 81159000 38078000 43081000 0 0 0 0 0 0 0 0 0 0 0 0 37703 2896;951 39616 199694;199695;199696;199697;199698 202945;202946;202947;202948;202949 202948 5 VTEGLTDVILYHQPDDK PKSKTKEQILEEFSKVTEGLTDVILYHQPD EGLTDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 2 0 1 2 0 0 17 0 1941.9684 B7Z645;O60506 O60506 266 282 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2;3 2.0661E-05 65.395 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 4 5 2 2 1.0421 1.0025 24.617 16 Plateau 1.0456 0.98167 NaN 1 0 Median 0.99186 0.86594 4.0463 2 0 Median 1.0725 1.0708 1.5469 4 0 Median 1.027 0.87474 34.686 5 0 Median 0.96547 0.93646 24.865 2 1 Median 0.97848 0.82636 19.9 2 0 Median 111190000 53544000 57643000 11677000 6169100 5507800 4320200 2241200 2079000 72366000 33793000 38573000 16945000 8333900 8611100 4926700 2574700 2352100 951380 432020 519360 37704 1619;634 39617 199699;199700;199701;199702;199703;199704;199705;199706;199707;199708;199709;199710;199711;199712;199713;199714 202950;202951;202952;202953;202954;202955;202956;202957;202958;202959;202960 202951 11 VTEGLTDVILYHQPDDKKK PKSKTKEQILEEFSKVTEGLTDVILYHQPD LTDVILYHQPDDKKKNRGFCFLEYEDHKTA K V T K K N 0 0 0 3 0 1 1 1 1 1 2 3 0 0 1 0 2 0 1 2 0 0 19 2 2198.1583 B7Z645;O60506 O60506 266 284 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 3;4 3.4569E-07 59.872 By MS/MS By MS/MS By matching By MS/MS By matching 2 4 4 3 3 0.93806 0.98278 19.002 16 Median 0.90626 0.92479 3.0293 2 0 Median NaN NaN NaN 0 0 Median 1.017 1.1887 24.838 4 1 Median 1.1255 1.0229 21.352 4 0 Median 0.90754 0.99296 7.6296 3 1 Median 0.86267 0.81379 11.405 3 0 Median 109990000 49595000 60395000 38368000 15577000 22791000 0 0 0 39952000 18557000 21395000 4721400 2129600 2591800 25647000 12648000 12999000 1301300 683250 618040 37705 1619;634 39618 199715;199716;199717;199718;199719;199720;199721;199722;199723;199724;199725;199726;199727;199728;199729;199730 202961;202962;202963;202964;202965;202966;202967;202968 202961 8 VTEGLVDVILYHQPDDK PKNKTKENILEEFSKVTEGLVDVILYHQPD EGLVDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 1 0 1 3 0 0 17 0 1939.9891 O43390;B4DT28 O43390 269 285 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 3 6.2964E-06 72.11 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 3 1.0216 0.90811 8.6647 11 Median NaN NaN NaN 0 0 Median 1.134 0.96888 9.1907 2 0 Median 0.92261 0.96259 19.557 2 0 Median 1.0113 0.88186 5.0352 2 0 Median 0.92837 0.91603 1.227 2 0 Median 1.0246 0.85991 4.3236 3 0 Median 193680000 96157000 97525000 0 0 0 24218000 11555000 12663000 29436000 15297000 14139000 3822400 1854500 1967900 96892000 48850000 48042000 39313000 18600000 20714000 37706 1568 39619 199731;199732;199733;199734;199735;199736;199737;199738;199739;199740;199741 202969;202970;202971;202972;202973;202974;202975;202976;202977;202978;202979 202976 11 VTEGLVDVILYHQPDDKKK PKNKTKENILEEFSKVTEGLVDVILYHQPD LVDVILYHQPDDKKKNRGFCFLEYEDHKSA K V T K K N 0 0 0 3 0 1 1 1 1 1 2 3 0 0 1 0 1 0 1 3 0 0 19 2 2196.179 O43390;B4DT28 O43390 269 287 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes no 3;4 3.6926E-08 68.187 By MS/MS By MS/MS By matching 2 5 4 0.97165 1.0764 34.371 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0405 1.2161 18.135 2 0 Median NaN NaN NaN 0 0 Median 0.95033 1.0352 7.3712 5 0 Median 1.0985 1.1935 67.727 3 0 Median 132960000 67112000 65845000 0 0 0 0 0 0 15476000 7447700 8027900 0 0 0 112930000 57563000 55367000 4551200 2100500 2450700 37707 1568 39620 199742;199743;199744;199745;199746;199747;199748;199749;199750;199751;199752 202980;202981;202982;202983;202984;202985;202986;202987;202988 202985 9 VTEGSFVYK KMLLYTEVTRYLDFKVTEGSFVYKGGKIYK RYLDFKVTEGSFVYKGGKIYKVPSTEAEAL K V T Y K G 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 9 0 1028.5179 P50395;Q5SX87;Q5SX86;V9GYJ7;V9GYF8;Q5SX90 P50395 104 112 GDI2 Rab GDP dissociation inhibitor beta yes no 2 0.0035039 81.548 By MS/MS 1 0.89408 0.82475 NaN 1 Median 0.89408 0.82475 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24403000 13090000 11313000 24403000 13090000 11313000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37708 2411 39621 199753 202989 202989 1 VTEKIPVR ASYGVSKGKVCFEMKVTEKIPVRHLYTKDI KVCFEMKVTEKIPVRHLYTKDIDIHEVRIG K V T V R H 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 2 0 0 8 1 940.57057 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7 Q00839 340 347 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 0.024129 77.741 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 4 3 1.0082 0.99211 6.5848 11 Median 1.0237 1.0507 3.3211 2 0 Median 1.0278 0.96874 NaN 1 0 Median 0.94187 1.0743 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91245 1.0188 8.045 4 0 Median 1.0532 0.95497 3.2386 3 0 Median 52563000 27097000 25466000 2761100 1464400 1296600 3261000 1566100 1694900 1100400 622690 477750 0 0 0 33765000 17743000 16022000 11675000 5700400 5974600 37709 2680 39622 199754;199755;199756;199757;199758;199759;199760;199761;199762;199763;199764 202990;202991;202992;202993;202994;202995;202996;202997;202998;202999;203000;203001 202993 12 VTELALTASDR REMKPVIFLDVFLPRVTELALTASDRQTKV FLPRVTELALTASDRQTKVAACELLHSMVM R V T D R Q 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1174.6194 P78527 P78527 914 924 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.1956E-36 202.36 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 2 2 3 1.2139 1.0676 17.662 14 Median 1.0221 0.97037 0.62543 2 0 Median 1.4667 1.208 8.1069 2 1 Median 0.89677 0.92313 12.73 3 0 Plateau 1.4972 1.3136 0.55389 2 2 Median 0.97864 0.99411 0.71972 2 1 Median 1.5564 1.2553 5.5152 3 1 Median 719470000 335760000 383710000 138630000 65908000 72722000 138810000 53906000 84909000 312220000 159270000 152950000 47911000 18746000 29165000 49600000 25713000 23886000 32302000 12221000 20081000 37710 2647 39623 199765;199766;199767;199768;199769;199770;199771;199772;199773;199774;199775;199776;199777;199778 203002;203003;203004;203005;203006;203007;203008;203009;203010;203011;203012;203013;203014;203015;203016;203017;203018;203019;203020;203021;203022 203011 21 VTELEDEVR MEKSVLGGQDQLRVRVTELEDEVRNLRKIN DQLRVRVTELEDEVRNLRKINRDLFDFSTR R V T V R N 0 1 0 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1088.535 U3KQC1;A0A0A0MQU0;Q9BV38;K7EIR0 U3KQC1 364 372 WDR18 WD repeat-containing protein 18 yes no 2 1.1488E-12 173.23 By MS/MS By MS/MS 1 1 1.1382 1.0491 15.553 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95191 0.93985 NaN 1 0 Median 1.361 1.1711 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30496000 14269000 16227000 0 0 0 0 0 0 10743000 4934000 5809400 19753000 9335400 10417000 0 0 0 0 0 0 37711 147 39624 199779;199780 203023;203024;203025 203025 3 VTEQDKAILQLK ______________________________ QSRVTEQDKAILQLKQQRDKLRQYQKRIAQ R V T L K Q 1 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 1 0 0 1 0 0 12 1 1384.7926 Q96FZ7 Q96FZ7 13 24 CHMP6 Charged multivesicular body protein 6 yes yes 2;3 2.5016E-05 99.815 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0612 1.0378 12.651 6 Median 1.0361 1.009 1.833 2 0 Median 1.2569 1.1502 12.407 2 0 Median 1.0724 1.0888 NaN 1 0 Median 0.94701 0.85128 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23640000 11109000 12532000 16334000 7715400 8618400 5306200 2487700 2818500 1486700 632310 854350 513370 273070 240300 0 0 0 0 0 0 37712 3651 39625 199781;199782;199783;199784;199785;199786 203026;203027;203028;203029 203027 4 VTEQEWR EEQRKRLQELDAASKVTEQEWREKAKKDLE QELDAASKVTEQEWREKAKKDLEEWNQRQS K V T W R E 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 7 0 946.45084 P09497 P09497 123 129 CLTB Clathrin light chain B yes yes 2 0.017772 64.757 By MS/MS 1 0.8059 0.77321 NaN 1 Median 0.8059 0.77321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3094600 1508700 1586000 3094600 1508700 1586000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37713 1916 39626 199787 203030 203030 1 VTEQLIEAINNGDFEAYTK IEDEDVKARKQEIIKVTEQLIEAINNGDFE LIEAINNGDFEAYTKICDPGLTAFEPEALG K V T T K I 2 0 2 1 0 1 3 1 0 2 1 1 0 1 0 0 2 0 1 1 0 0 19 0 2154.0481 Q13557;E9PF82;E9PBG7;D6R938;H0Y9C2;H0Y9J2 Q13557 353 371 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta yes no 3 0.024294 14.614 By MS/MS 1 0.6681 0.66393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6681 0.66393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2765200 1667800 1097400 0 0 0 0 0 0 2765200 1667800 1097400 0 0 0 0 0 0 0 0 0 37714 799 39627 199788 203031 203031 1 VTEYLYANK PLANIQEVSINIAIKVTEYLYANKMAFRYP INIAIKVTEYLYANKMAFRYPEPEDKAKYV K V T N K M 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 2 1 0 0 9 0 1099.555 A0A1W2PPH1;P23368;A0A1W2PQH3;A0A1W2PR68 A0A1W2PPH1 492 500 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.012866 60.59 By MS/MS 1 1.4968 1.2675 NaN 1 Median NaN NaN NaN 0 0 Median 1.4968 1.2675 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5565400 2206700 3358700 0 0 0 5565400 2206700 3358700 0 0 0 0 0 0 0 0 0 0 0 0 37715 337 39628 199789 203032 203032 1 VTFDPTSSYTLEDLKPDTLYR ELVYWAAEDEDQQHKVTFDPTSSYTLEDLK SSYTLEDLKPDTLYRFQLAARSDMGVGVFT K V T Y R F 0 1 0 3 0 0 1 0 0 0 3 1 0 1 2 2 4 0 2 1 0 0 21 1 2460.206 P10586;H0Y7Z9;H0Y6Z7;H0Y4H1 P10586 559 579 PTPRF Receptor-type tyrosine-protein phosphatase F yes no 3 0.068944 7.712 By MS/MS 1 0.95151 0.98424 NaN 1 Median 0.95151 0.98424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1214200 634680 579540 1214200 634680 579540 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37716 1939 39629 199790 203033 203033 1 VTFEADENENITVVK ______________________________ VTFEADENENITVVKGIRLSENVIDRMKES R V T V K G 1 0 2 1 0 0 3 0 0 1 0 1 0 1 0 0 2 0 0 3 0 0 15 0 1706.8363 C9JRZ6;F8WAR4;Q9NX63 C9JRZ6 10 24 CHCHD3 MICOS complex subunit MIC19 yes no 2 0.0003095 67.385 By MS/MS By matching By matching 1 1 1 0.84803 0.78919 13.078 3 Median 0.84803 0.78919 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61038 0.68035 NaN 1 0 Median 0.97868 0.88302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9990400 5493000 4497400 7137900 3688300 3449600 0 0 0 2703300 1738500 964780 149230 66231 83004 0 0 0 0 0 0 37717 720 39630 199791;199792;199793 203034 203034 1 VTFEDATDFFGR LQTFPIPAAEVDRLKVTFEDATDFFGRVVI RLKVTFEDATDFFGRVVIYHLRVLGEKV__ K V T G R V 1 1 0 2 0 0 1 1 0 0 0 0 0 3 0 0 2 0 0 1 0 0 12 0 1403.6357 Q86WQ0 Q86WQ0 115 126 NR2C2AP Nuclear receptor 2C2-associated protein yes yes 2 0.011873 36.424 By matching By MS/MS 1 1 0.94032 0.94026 16.27 2 Median 1.0708 1.0549 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82576 0.83808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1681200 884160 797030 611080 322850 288240 0 0 0 1070100 561310 508790 0 0 0 0 0 0 0 0 0 37718 3294 39631 199794;199795 203035 203035 1 VTFEELR VALYIAREGKEEIVKVTFEELRQEVALFAA EGKEEIVKVTFEELRQEVALFAAAMRKMGV K V T L R Q 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 892.46543 Q86V21 Q86V21 129 135 AACS Acetoacetyl-CoA synthetase yes yes 2 0.022964 57.281 By MS/MS By MS/MS 1 1 1.0305 0.9552 13.63 2 Median 1.0608 1.0518 NaN 1 0 Median 1.0009 0.86744 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5609200 2927100 2682100 3153100 1759800 1393300 2456100 1167300 1288700 0 0 0 0 0 0 0 0 0 0 0 0 37719 3284 39632 199796;199797 203036;203037;203038 203036 3 VTFGLNR GPAVQLNKTPSSSKKVTFGLNRNMTAEFKK KTPSSSKKVTFGLNRNMTAEFKKTDKSILV K V T N R N 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 805.44464 Q14684 Q14684 684 690 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0098261 83.287 By MS/MS By MS/MS 1 1 1.2571 1.1556 16.641 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96043 1.0273 NaN 1 0 Median 1.6454 1.2999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5005800 1990600 3015200 0 0 0 0 0 0 4319200 1753500 2565600 686600 237040 449550 0 0 0 0 0 0 37720 2890 39633 199798;199799 203039;203040;203041 203039 3 VTFLITR YMFVDENTFSNDALKVTFLITRLTGPALQW TFSNDALKVTFLITRLTGPALQWVIPYIRK K V T T R L 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 2 0 0 1 0 0 7 0 848.51199 Q9BWD3;Q17RB0;A6ZKI3 Q9BWD3 65 71 FAM127B;FAM127C;FAM127A Protein FAM127B;Protein FAM127C;Protein FAM127A no no 2 0.021608 58.917 By MS/MS By MS/MS By matching 1 1 1 1.6275 1.379 25.343 3 Median 1.1024 1.0701 NaN 1 0 Median 1.6275 1.379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.285 1.7765 NaN 1 0 Median 20386000 9349500 11036000 17030000 8052200 8978100 3150400 1223300 1927100 0 0 0 0 0 0 0 0 0 205120 74075 131040 37721 3869;535 39634 199800;199801;199802 203042;203043;203044 203043 3 VTFMSAVSSQEK TWNIILHSTGHNISRVTFMSAVSSQEKQAE ISRVTFMSAVSSQEKQAEILEYAYHGQIAI R V T E K Q 1 0 0 0 0 1 1 0 0 0 0 1 1 1 0 3 1 0 0 2 0 0 12 0 1312.6333 Q9UIQ6 Q9UIQ6 219 230 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2 7.6405E-06 109.42 By MS/MS 1 0.94454 0.91327 NaN 1 Median 0.94454 0.91327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8537000 4743800 3793200 8537000 4743800 3793200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37722 4292 39635 199803 203045 203045 1 VTFNSALAQK ______________________________ ______________________________ K V T Q K E 2 0 1 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 10 0 1077.5819 A0A3B3IU60;A0A3B3ITP9;Q9Y287 A0A3B3IU60 4 13 ITM2B Integral membrane protein 2B;BRI2, membrane form;BRI2 intracellular domain;BRI2C, soluble form;Bri23 peptide yes no 2 0.00052686 114.89 By MS/MS 1 1.5132 1.2499 NaN 1 Median NaN NaN NaN 0 0 Median 1.5132 1.2499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5362300 2524400 2838000 0 0 0 5362300 2524400 2838000 0 0 0 0 0 0 0 0 0 0 0 0 37723 437 39636 199804 203046 203046 1 VTFQFSYGTK VLGLKLPNLLGRAEKVTFQFSYGTKETSYG GRAEKVTFQFSYGTKETSYGLSFFKPRPGN K V T T K E 0 0 0 0 0 1 0 1 0 0 0 1 0 2 0 1 2 0 1 1 0 0 10 0 1176.5815 Q9Y512 Q9Y512 159 168 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.0025407 59.908 By MS/MS By matching By matching 1 1 1 1.3736 1.2015 19.861 3 Median 1.1407 1.0563 NaN 1 0 Median 1.3736 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.504 1.5598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14474000 6483300 7990400 13144000 6008600 7135700 1057200 385700 671470 0 0 0 272220 88996 183230 0 0 0 0 0 0 37724 4452 39637 199805;199806;199807 203047 203047 1 VTFSEDDEIINPEDVDPSVGR NLDIQRPKRKRKNSRVTFSEDDEIINPEDV DEIINPEDVDPSVGRFRNMVQTAVVPVKKK R V T G R F 0 1 1 4 0 0 3 1 0 2 0 0 0 1 2 2 1 0 0 3 0 0 21 0 2332.0707 Q12972;A0A0A0MT09 Q12972 201 221 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay yes no 2;3 1.5094E-22 114.74 By MS/MS By matching 3 1 0.6703 0.72951 12.593 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62243 0.67986 11.508 3 0 Median 0.96583 0.81854 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25682000 15023000 10659000 0 0 0 0 0 0 25516000 14941000 10576000 165540 82066 83479 0 0 0 0 0 0 37725 2775 39638 199808;199809;199810;199811 203048;203049;203050;203051;203052;203053;203054 203051 7 VTFSGLRDTVTPGELLK AKLSATLEQAAATARVTFSGLRDTVTPGEL FSGLRDTVTPGELLKAEIIDQDLYERLEHG R V T L K A 0 1 0 1 0 0 1 2 0 0 3 1 0 1 1 1 3 0 0 2 0 0 17 1 1832.0044 P58107;A0A075B730 P58107 558 574 EPPK1 Epiplakin yes no 3 5.4619E-05 48.216 By MS/MS By matching By matching 2 1 1 1.1134 1.1438 7.7833 4 Median 1.1134 1.1479 1.1415 2 0 Median 1.0014 0.98331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2822 1.149 NaN 1 0 Median 21901000 10091000 11809000 21257000 9807600 11449000 594030 261620 332410 0 0 0 0 0 0 0 0 0 49980 22261 27719 37726 2520 39639 199812;199813;199814;199815 203055 203055 1 VTFVNFTVTR TRDPTVEFPPDLCSRVTFVNFTVTRSSLQS DLCSRVTFVNFTVTRSSLQSQCLNEVLKAE R V T T R S 0 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 3 0 0 10 0 1182.6397 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;A0A2R8Y542 Q14204 3696 3705 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00036469 100.25 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1.391 1.1629 50.871 7 Median 1.1089 1.0804 3.5028 2 0 Median 1.3987 1.1315 NaN 1 0 Median 1.391 1.5446 NaN 1 0 Median 2.5065 2.2574 93.805 2 0 Median NaN NaN NaN 0 0 Median 1.4358 1.1805 NaN 1 0 Median 65453000 30082000 35370000 48768000 23395000 25373000 11851000 4832500 7018600 2190100 865410 1324700 2156000 801640 1354400 0 0 0 487200 188080 299120 37727 2865 39640 199816;199817;199818;199819;199820;199821;199822 203056;203057;203058;203059;203060;203061;203062;203063 203057 8 VTGADVPMPYAK MEGPAFNFLDAPAVRVTGADVPMPYAKILE AVRVTGADVPMPYAKILEDNSIPQVKDIIF R V T A K I 2 0 0 1 0 0 0 1 0 0 0 1 1 0 2 0 1 0 1 2 0 0 12 0 1247.622 P11177 P11177 325 336 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 5.2871E-06 99.815 By MS/MS By MS/MS 2 1 0.62378 0.52429 33.825 3 Median 0.6735 0.60287 46.456 2 0 Median 0.62378 0.52429 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72696000 49214000 23482000 65179000 44920000 20259000 7517000 4294500 3222500 0 0 0 0 0 0 0 0 0 0 0 0 37728 1954 39641 199823;199824;199825 203064;203065;203066 203064 3 VTGDEWGDNYFLVGPYTEQGVR NKVGGIYTVLQTKAKVTGDEWGDNYFLVGP DNYFLVGPYTEQGVRTQVELLEAPTPALKR K V T V R T 0 1 1 2 0 1 2 4 0 0 1 0 0 1 1 0 2 1 2 3 0 0 22 0 2501.1499 P13807 P13807 53 74 GYS1 Glycogen [starch] synthase, muscle yes yes 2 0.00013026 37.156 By MS/MS 1 0.81185 0.80535 NaN 1 Median 0.81185 0.80535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1434900 822570 612330 1434900 822570 612330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37729 1997 39642 199826 203067;203068 203067 2 VTGDTVYNMLR GRADELNNKHTIFGKVTGDTVYNMLRLSEV IFGKVTGDTVYNMLRLSEVDIDDDERPHNP K V T L R L 0 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 2 0 1 2 0 0 11 0 1267.6231 Q6UX04;D6REK3 Q6UX04 133 143 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 2 0.0001641 113.71 By MS/MS By MS/MS By matching 1 1 2 1.4807 1.4616 19.243 4 Median 1.3465 1.3018 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1558 1.1657 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6526 1.6973 4.7672 2 0 Median NaN NaN NaN 0 0 Median 18389000 7256300 11133000 5936500 1711800 4224700 0 0 0 9195100 4207300 4987800 0 0 0 3257600 1337200 1920400 0 0 0 37730 3189 39643 199827;199828;199829;199830 203069;203070;203071 203070 3 VTGEADVEFATHEDAVAAMAK LNPMRVHIEIGPDGRVTGEADVEFATHEDA VEFATHEDAVAAMAKDKANMQHRYVELFLN R V T A K D 6 0 0 2 0 0 3 1 1 0 0 1 1 1 0 0 2 0 0 3 0 0 21 0 2160.9997 P55795 P55795 327 347 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 3 4.5262E-13 84.919 By MS/MS By matching By MS/MS By matching 1 1 2 2 1.1789 1.0736 35.124 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88108 0.84218 NaN 1 0 Median 1.3562 1.2095 NaN 1 0 Median 0.9885 0.98218 0.46015 2 0 Median 1.9853 1.634 47.262 2 0 Median 74513000 35989000 38524000 0 0 0 0 0 0 49303000 24566000 24737000 2229800 883080 1346800 22121000 10213000 11908000 858530 327040 531490 37731 2502 39644 199831;199832;199833;199834;199835;199836 203072;203073;203074;203075;203076 203073 5 VTGEADVEFATHEDAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEDA VEFATHEDAVAAMSKDKANMQHRYVELFLN R V T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7 P31943 327 347 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 5.0932E-26 124.98 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 2 7 5 11 9 1.0051 0.93183 14.22 36 Median 0.9849 0.92983 1.2484 2 0 Median 0.96362 0.84098 27.489 2 0 Median 0.97777 0.93492 17.393 7 0 Median 1.1836 1.0152 2.2884 5 0 Median 0.96304 0.92237 14.916 11 1 Median 1.0769 0.90362 13.053 9 0 Median 755020000 357330000 397690000 11740000 5745700 5994300 2378000 1087700 1290200 348970000 164290000 184680000 47909000 21291000 26618000 316710000 152430000 164280000 27317000 12493000 14824000 37732 1136 39645;39646 199837;199838;199839;199840;199841;199842;199843;199844;199845;199846;199847;199848;199849;199850;199851;199852;199853;199854;199855;199856;199857;199858;199859;199860;199861;199862;199863;199864;199865;199866;199867;199868;199869;199870;199871;199872 203077;203078;203079;203080;203081;203082;203083;203084;203085;203086;203087;203088;203089;203090;203091;203092;203093;203094;203095;203096;203097;203098;203099;203100;203101;203102;203103;203104;203105;203106;203107;203108;203109 203108 382 33 VTGEADVEFATHEEAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEEA VEFATHEEAVAAMSKDRANMQHRYIELFLN R V T S K D 5 0 0 1 0 0 4 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2191.0103 P52597 P52597 327 347 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3 4.273E-12 72.443 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 1 4 3 4 3 1.0342 0.99446 8.8808 17 Median 1.0124 0.96441 5.1226 2 0 Median 1.1871 1.0414 NaN 1 0 Median 0.92814 0.88508 11.696 4 0 Median 1.1703 1.0591 7.7105 3 0 Plateau 1.0205 1.03 8.6619 4 0 Median 1.2678 1.0176 3.4377 3 0 Plateau 253750000 120650000 133100000 9543900 4749000 4794800 920520 370890 549630 156870000 76208000 80657000 35679000 15990000 19690000 47862000 22201000 25661000 2879200 1135000 1744300 37733 2452 39647;39648 199873;199874;199875;199876;199877;199878;199879;199880;199881;199882;199883;199884;199885;199886;199887;199888;199889 203110;203111;203112;203113;203114;203115;203116;203117;203118;203119;203120;203121;203122;203123;203124;203125;203126;203127;203128;203129;203130;203131;203132;203133;203134;203135 203121 1148 26 VTGEVLDILTR ITLVSSGSGTMGAAKVTGEVLDILTRLPES GAAKVTGEVLDILTRLPESVERLTGVSISQ K V T T R L 0 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1214.6871 O75955;A0A140T9R1;A0A140T9W4;A0A140T974 O75955 393 403 FLOT1 Flotillin-1 yes no 2 0.00014526 84.17 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.95503 1.1155 24.252 4 Linear 0.77142 0.75898 NaN 1 0 Median 1.3465 1.1301 NaN 1 0 Median 1.1824 1.1561 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72731 0.74387 NaN 1 0 Median NaN NaN NaN 0 0 Median 54814000 23849000 30965000 4781000 2586800 2194200 24716000 10014000 14702000 24719000 10883000 13836000 0 0 0 597390 365650 231740 0 0 0 37734 1712 39649 199890;199891;199892;199893 203136;203137;203138;203139;203140 203138 5 VTGGIFSVTK SMKDHPQQQPGMLSRVTGGIFSVTKGAVGA GMLSRVTGGIFSVTKGAVGATIGGVAWIGG R V T T K G 0 0 0 0 0 0 0 2 0 1 0 1 0 1 0 1 2 0 0 2 0 0 10 0 1007.5651 Q8WUH6 Q8WUH6 38 47 TMEM263 Transmembrane protein 263 yes yes 2 0.0059955 68.657 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37735 3490 39650 199894;199895 203141;203142 203142 2 VTGPQATTGTPLVTMRPASQAGK VPTAARTQGVPAVLKVTGPQATTGTPLVTM GTPLVTMRPASQAGKAPVTVTSLPAGVRMV K V T G K A 3 1 0 0 0 2 0 3 0 0 1 1 1 0 3 1 5 0 0 2 0 0 23 1 2268.1896 A6NEM2;P51610 A6NEM2 489 511 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 1.4835E-12 61.703 By MS/MS By MS/MS 1 2 0.71086 0.8351 11.744 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71086 0.85229 NaN 1 0 Median 0.73571 0.70863 6.9762 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14234000 8154200 6079700 0 0 0 0 0 0 7957200 4565800 3391500 6276600 3588400 2688200 0 0 0 0 0 0 37736 509;2438 39651 199896;199897;199898 203143;203144;203145;203146;203147 203146 5 VTGQFPWSSLR RPGNFERNFSVNLYKVTGQFPWSSLRETDR NLYKVTGQFPWSSLRETDRGMSAEYSFPIW K V T L R E 0 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 1 1 0 1 0 0 11 0 1276.6564 Q9Y512 Q9Y512 195 205 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.015509 36.693 By MS/MS By matching By matching 1 1 1 1.0536 0.96784 7.1129 3 Median 1.0536 1.0361 NaN 1 0 Median 1.0399 0.89871 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1281 0.96784 NaN 1 0 Median 7643500 3098600 4544800 4840000 1729200 3110900 1955100 1005500 949610 0 0 0 0 0 0 0 0 0 848340 363980 484360 37737 4452 39652 199899;199900;199901 203148 203148 1 VTGQHQGYGFVEFLSEEDADYAIK LQAGPVVNTHMPKDRVTGQHQGYGFVEFLS FVEFLSEEDADYAIKIMNMIKLYGKPIRVN R V T I K I 2 0 0 2 0 2 3 3 1 1 1 1 0 2 0 1 1 0 2 2 0 0 24 0 2702.25 Q15427;Q5SZ64 Q15427 49 72 SF3B4 Splicing factor 3B subunit 4 yes no 3 2.1649E-05 36.256 By matching By MS/MS By MS/MS 1 1 2 1.0501 0.97485 18.338 4 Median NaN NaN NaN 0 0 Median 1.071 0.9096 NaN 1 0 Median 0.9902 0.96304 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0938 1.161 22.985 2 0 Median NaN NaN NaN 0 0 Median 11553000 5446500 6106500 0 0 0 359080 155100 203980 8416900 4028200 4388700 0 0 0 2777100 1263300 1513800 0 0 0 37738 2952 39653 199902;199903;199904;199905 203149;203150;203151;203152 203150 4 VTGQNQEQFLLLAK ______________________________ KVTGQNQEQFLLLAKSAKGAALATLIHQVL K V T A K S 1 0 1 0 0 3 1 1 0 0 3 1 0 1 0 0 1 0 0 1 0 0 14 0 1587.8621 Q9UBW8;F5H7C6;F5GYF7;F5H248;F5H4U8;F5H4Z0;F5H3M6;G3XAP1;F5GXT7 Q9UBW8 7 20 COPS7A COP9 signalosome complex subunit 7a yes no 2 1.9364E-06 96.847 By MS/MS By MS/MS By matching By matching By matching 1 2 2 1 1 1.3857 1.2175 26.533 7 Median 1.2842 1.176 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4179 1.3499 2.6703 2 1 Median 1.3915 1.1523 7.793 2 0 Median 2.0869 2.1434 NaN 1 0 Median 1.0661 0.91201 NaN 1 0 Median 23983000 11092000 12891000 15040000 7338900 7700800 0 0 0 7088200 3117700 3970500 401710 179850 221860 1377100 422690 954440 76697 32789 43908 37739 4253 39654 199906;199907;199908;199909;199910;199911;199912 203153;203154;203155;203156;203157 203154 5 VTGSLETK LEFTSSGSANTETTKVTGSLETKYRWTEYG ANTETTKVTGSLETKYRWTEYGLTFTEKWN K V T T K Y 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 0 0 8 0 833.44945 P21796;C9JI87 P21796 54 61 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.022207 45.081 By MS/MS By matching By matching 1 1 1 1.2582 1.1365 8.9855 3 Median 1.1604 1.1365 NaN 1 0 Median 1.4551 1.2333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2582 1.0306 NaN 1 0 Median 2723700 1243200 1480500 1619100 787240 831820 875620 347460 528170 0 0 0 0 0 0 0 0 0 229040 108490 120550 37740 2092 39655 199913;199914;199915 203158;203159 203158 2 VTGSLSSAK SRQGSTQGRLDDFFKVTGSLSSAKRKEPEP LDDFFKVTGSLSSAKRKEPEPKGSTKKKAK K V T A K R 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 3 1 0 0 1 0 0 9 0 848.46035 P39748 P39748 346 354 FEN1 Flap endonuclease 1 yes yes 2 0.041602 33.263 By MS/MS 2 1.0449 1.1067 0.13487 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0449 1.1067 0.13487 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 803070 388580 414490 0 0 0 0 0 0 803070 388580 414490 0 0 0 0 0 0 0 0 0 37741 2283 39656 199916;199917 203160 203160 1 VTGTLDANR IIVFRGEHGFIGCRKVTGTLDANRSSYDVF FIGCRKVTGTLDANRSSYDVFQLEFNDGAY K V T N R S 1 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 1 0 0 9 0 945.48796 Q16658;C9JFC0;A0A0A0MSB2 Q16658 400 408 FSCN1 Fascin yes no 2 0.0035039 94.302 By MS/MS 2 1.2407 1.0468 NaN 1 Median NaN NaN NaN 0 0 Median 1.2407 1.0468 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7133900 3286900 3846900 0 0 0 7133900 3286900 3846900 0 0 0 0 0 0 0 0 0 0 0 0 37742 2993 39657 199918;199919 203161;203162 203161 2 VTGTLETK VEFSTSGSSNTDTGKVTGTLETKYKWCEYG SNTDTGKVTGTLETKYKWCEYGLTFTEKWN K V T T K Y 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 8 0 847.4651 A0A0A0MR02;P45880;Q5JSD2;Q5JSD1;A2A3S1 A0A0A0MR02 65 72 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.042262 36.395 By MS/MS By matching By matching 1 1 1 1.0142 1.0127 7.2517 3 Median 1.0142 0.9924 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99637 1.0127 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3367 1.1353 NaN 1 0 Median 1829600 881990 947570 1489200 715470 773770 0 0 0 195280 99566 95713 0 0 0 0 0 0 145050 66958 78090 37743 151 39658 199920;199921;199922 203163;203164 203163 2 VTGVPGTEFVQK FKGKDYLDQLTQILKVTGVPGTEFVQKLND ILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ K V T Q K L 0 0 0 0 0 1 1 2 0 0 0 1 0 1 1 0 2 0 0 3 0 0 12 0 1260.6714 O15264 O15264 238 249 MAPK13 Mitogen-activated protein kinase 13 yes yes 2 0.0011673 56.258 By MS/MS By MS/MS 1 1 1.0178 0.95315 4.3026 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89031 0.92459 NaN 1 0 Median 1.1634 0.9826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10309000 5262100 5046700 0 0 0 0 0 0 8565400 4398000 4167400 1743400 864070 879330 0 0 0 0 0 0 37744 1535 39659 199923;199924 203165;203166 203165 2 VTGVPLSYLLSR LERLMVLVNAVEMARVTGVPLSYLLSRGQQ MARVTGVPLSYLLSRGQQVKVVSQLLRQAM R V T S R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 2 1 0 1 2 0 0 12 0 1303.75 M0R2B7;P28340;A0A087WYJ2;M0QZR8;A0A2R8Y705;A0A2R8Y7K6 M0R2B7 538 549 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.0031404 46.891 By MS/MS By matching By matching 2 2 1 1.2093 1.0242 32.545 5 Median 1.0561 1.0186 43.899 2 0 Median 1.5219 1.2912 32.765 2 0 Median 0.79075 0.85792 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12273000 6313700 5959600 5783600 3306200 2477400 5078200 2257100 2821100 1411600 750480 661090 0 0 0 0 0 0 0 0 0 37745 1436 39660 199925;199926;199927;199928;199929 203167;203168 203168 2 VTGYGGWSWISK PVKHQVWKQKGEEYRVTGYGGWSWISKTHV EYRVTGYGGWSWISKTHVYRFVPKLPGNTN R V T S K T 0 0 0 0 0 0 0 3 0 1 0 1 0 0 0 2 1 2 1 1 0 0 12 0 1339.6561 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5 Q12830 1028 1039 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.00063206 64.297 By MS/MS By matching 2 1 1.1338 1.2608 4.5498 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1127 1.2143 5.6542 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4765 1.2608 NaN 1 0 Median 17007000 7797100 9209900 0 0 0 0 0 0 16819000 7724400 9094400 0 0 0 0 0 0 188270 72738 115530 37746 2762 39661 199930;199931;199932 203169;203170;203171 203171 3 VTHAVVTVPAYFNDAQR LTKMKETAEAYLGKKVTHAVVTVPAYFNDA HAVVTVPAYFNDAQRQATKDAGTIAGLNVM K V T Q R Q 3 1 1 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 1 4 0 0 17 0 1886.9639 P11021 P11021 165 181 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 6.5268E-12 129.84 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 3 1 2 1 1.0169 0.96777 19.819 14 Median 1.0033 0.94851 10.104 7 2 Median 1.116 0.96313 16.345 3 0 Median 1.0037 1.0088 NaN 1 0 Median 1.1843 1.0064 1.6311 2 0 Median 1.7767 1.8132 NaN 1 1 Median NaN NaN NaN 0 0 Median 361250000 170690000 190560000 247140000 119030000 128110000 52571000 23769000 28802000 44075000 21079000 22996000 7303100 2996500 4306600 10158000 3822300 6335600 0 0 0 37747 1948 39662 199933;199934;199935;199936;199937;199938;199939;199940;199941;199942;199943;199944;199945;199946 203172;203173;203174;203175;203176;203177;203178;203179;203180;203181;203182;203183;203184;203185;203186;203187;203188;203189;203190;203191;203192;203193 203178 22 VTHELQAMK LLDSEIKIMKSEVLRVTHELQAMKDKIKEN KSEVLRVTHELQAMKDKIKENSEKIKVNKT R V T M K D 1 0 0 0 0 1 1 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1055.5434 R4GNH3;P17980;E9PKD5;E9PMD8;E9PN50;E9PLG2 R4GNH3 46 54 PSMC3 26S protease regulatory subunit 6A yes no 2 0.0018938 76.478 By matching By MS/MS By matching 1 1 1 1.1113 0.94958 8.2817 3 Plateau 1.0212 1.0073 NaN 1 0 Median 1.1113 0.94958 NaN 1 0 Median 0.72919 0.85531 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3743900 1787000 1957000 506510 249160 257350 2988500 1405700 1582800 248960 132150 116810 0 0 0 0 0 0 0 0 0 37748 2050 39663 199947;199948;199949 203194;203195 203194 2 VTHELQAMKDK LLDSEIKIMKSEVLRVTHELQAMKDKIKEN EVLRVTHELQAMKDKIKENSEKIKVNKTLP R V T D K I 1 0 0 1 0 1 1 0 1 0 1 2 1 0 0 0 1 0 0 1 0 0 11 1 1298.6653 R4GNH3;P17980;E9PKD5;E9PMD8;E9PN50;E9PLG2 R4GNH3 46 56 PSMC3 26S protease regulatory subunit 6A yes no 3 0.022487 37.995 By MS/MS 1 1.2285 1.1588 NaN 1 Median NaN NaN NaN 0 0 Median 1.2285 1.1588 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 689860 332450 357410 0 0 0 689860 332450 357410 0 0 0 0 0 0 0 0 0 0 0 0 37749 2050 39664 199950 203196 203196 1 VTHETSAHEGQTEAPSIDEK PEERARYLENYDAIRVTHETSAHEGQTEAP SAHEGQTEAPSIDEKVDLHFIALVHVDGHL R V T E K V 2 0 0 1 0 1 4 1 2 1 0 1 0 0 1 2 3 0 0 1 0 0 20 0 2164.9873 P15374;A0A087WTB8 P15374 146 165 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 4 0.034991 12.128 By MS/MS 1 1.0089 0.86233 NaN 1 Median NaN NaN NaN 0 0 Median 1.0089 0.86233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 877310 408200 469120 0 0 0 877310 408200 469120 0 0 0 0 0 0 0 0 0 0 0 0 37750 2017 39665 199951 203197 203197 1 VTHVEPWEK ELKTYHEVVDEIYFKVTHVEPWEKGSRKTA DEIYFKVTHVEPWEKGSRKTAGQTGMCGGV K V T E K G 0 0 0 0 0 0 2 0 1 0 0 1 0 0 1 0 1 1 0 2 0 0 9 0 1123.5662 Q5VTL8 Q5VTL8 93 101 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.058746 43.083 By MS/MS 1 0.97269 1.0341 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97269 1.0341 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3797700 2039700 1758000 0 0 0 0 0 0 3797700 2039700 1758000 0 0 0 0 0 0 0 0 0 37751 3111 39666 199952 203198 203198 1 VTHVMIR RTGDDKGESNDGKSKVTHVMIRCQELKYDV ESNDGKSKVTHVMIRCQELKYDVGGGERFD K V T I R C 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 2 0 0 7 0 854.47964 Q06124;A0A1W2PPU4;H0YF12 Q06124 167 173 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 2 0.033693 48.174 By MS/MS 1 1.119 1.1354 NaN 1 Median 1.119 1.1354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1188600 553290 635290 1188600 553290 635290 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37752 2721 39667 199953 203199;203200 203200 2 VTIAQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKAKGFRSSQ K V T P K K 2 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 1 0 0 3 0 0 19 0 1930.1615 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9;Q93077;Q7L7L0;P04908 A0A0U1RR32 101 119 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3 2.1822E-108 219.89 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 3 9 15 0.93244 0.78899 14.682 34 Median 0.69898 0.67586 27.822 2 0 Median 1.1697 1.0129 11.574 3 0 Median 0.65998 0.67291 0.40975 2 0 Median 1.1624 0.94894 29.495 3 0 Median 0.67106 0.68817 4.5796 9 4 Median 0.98537 0.79816 4.7973 15 6 Median 36879000000 20287000000 16592000000 3211100 1842200 1368900 2090500 939210 1151300 27090000 15598000 11493000 1685700 779840 905820 18499000000 11487000000 7011300000 18346000000 8780100000 9566300000 37753 308;1856 39668 199954;199955;199956;199957;199958;199959;199960;199961;199962;199963;199964;199965;199966;199967;199968;199969;199970;199971;199972;199973;199974;199975;199976;199977;199978;199979;199980;199981;199982;199983;199984;199985;199986;199987 203201;203202;203203;203204;203205;203206;203207;203208;203209;203210;203211;203212;203213;203214;203215;203216;203217;203218;203219;203220;203221;203222;203223;203224;203225;203226;203227;203228;203229;203230;203231;203232;203233;203234;203235;203236;203237;203238;203239 203235 39 VTIAQGGVLPNIQAVLLPKK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV GGVLPNIQAVLLPKKTESHHKAKGFRSSQW K V T K K T 2 0 1 0 0 2 0 2 0 2 3 2 0 0 2 0 1 0 0 3 0 0 20 1 2058.2565 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q9BTM1;Q16777;H0YFX9;Q93077;Q7L7L0;P04908 A0A0U1RR32 101 120 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3 1.0401E-10 89.344 By MS/MS By MS/MS 2 4 0.95542 0.81969 16.354 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59254 0.68124 26.995 2 1 Median 0.98193 0.83528 3.5755 4 0 Median 247660000 138840000 108820000 0 0 0 0 0 0 0 0 0 0 0 0 163680000 96738000 66943000 83983000 42104000 41878000 37754 308;1856 39669 199988;199989;199990;199991;199992;199993 203240;203241;203242;203243;203244;203245;203246;203247;203248;203249;203250 203244 10 VTIAQGGVLPNIQAVLLPKKTESHHK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV IQAVLLPKKTESHHKAKGFRSSQWLVPSRL K V T H K A 2 0 1 0 0 2 1 2 2 2 3 3 0 0 2 1 2 0 0 3 0 0 26 2 2777.5916 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q6FI13;P20671;P0C0S8;Q93077;Q7L7L0;P04908 A0A0U1RR32 101 126 HIST1H2AJ;HIST1H2AH;HIST2H2AA3;HIST1H2AD;HIST1H2AG;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 4 0.0062585 24.096 By MS/MS 1 0.59792 0.67574 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59792 0.67574 NaN 1 1 Median NaN NaN NaN 0 0 Median 6305300 4250500 2054800 0 0 0 0 0 0 0 0 0 0 0 0 6305300 4250500 2054800 0 0 0 37755 308;1856 39670 199994 203251 203251 1 VTIAQGYDALSSMANIAGYK SQRKTTVLAMDQVPRVTIAQGYDALSSMAN GYDALSSMANIAGYKAVVLAANHFGRFFTG R V T Y K A 4 0 1 1 0 1 0 2 0 2 1 1 1 0 0 2 1 0 2 1 0 0 20 0 2072.0248 Q13423;E9PCX7;A0A590UJM2;A0A590UK29;A0A590UJI3;D6RAI5 Q13423 183 202 NNT NAD(P) transhydrogenase, mitochondrial yes no 3 0.023083 14.46 By MS/MS By MS/MS 2 1 1.1369 0.83262 29.202 3 Plateau 0.82366 0.82496 1.3064 2 0 Median 1.5655 1.3677 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5343400 2529500 2813900 2835500 1522800 1312600 2507900 1006600 1501300 0 0 0 0 0 0 0 0 0 0 0 0 37756 2814 39671 199995;199996;199997 203252;203253;203254 203252 3 VTIDPENNLISIWNNGK AADNKQRDPKMSCIRVTIDPENNLISIWNN IDPENNLISIWNNGKGIPVVEHKVEKMYVP R V T G K G 0 0 4 1 0 0 1 1 0 3 1 1 0 0 1 1 1 1 0 1 0 0 17 0 1925.9847 P11388;J3KTB7 P11388 107 123 TOP2A DNA topoisomerase 2-alpha yes no 2 1.021E-05 81.525 By MS/MS By matching By MS/MS 2 1 1 0.83769 0.89579 22.218 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72864 0.7944 23.769 2 0 Median 1.2723 1.1465 NaN 1 0 Median 0.8318 0.85384 NaN 1 0 Median NaN NaN NaN 0 0 Median 7601000 3932800 3668300 0 0 0 0 0 0 5962400 3163800 2798500 386980 162000 224980 1251700 606910 644780 0 0 0 37757 1963 39672 199998;199999;200000;200001 203255;203256;203257 203256 3 VTIEYYSQLK FGGYKKSGFGRENGRVTIEYYSQLKTVCVE RENGRVTIEYYSQLKTVCVEMGDVESAF__ R V T L K T 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 1 0 2 1 0 0 10 0 1242.6496 P49189 P49189 472 481 ALDH9A1 4-trimethylaminobutyraldehyde dehydrogenase yes yes 2 0.00040727 76.827 By MS/MS By MS/MS By matching 2 2 2 1.0352 0.88637 59.295 6 Median 1.0069 0.92779 12.431 2 0 Median 1.0032 0.84738 12.334 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9923 1.6984 107.51 2 0 Median 57860000 27320000 30540000 40881000 19661000 21220000 11632000 5194500 6437700 0 0 0 0 0 0 0 0 0 5346300 2463900 2882400 37758 2372 39673 200002;200003;200004;200005;200006;200007 203258;203259;203260;203261 203258 4 VTILELFR QEMKEESRQMMREKKVTILELFRSPAYRQP QMMREKKVTILELFRSPAYRQPILIAVVLQ K V T F R S 0 1 0 0 0 0 1 0 0 1 2 0 0 1 0 0 1 0 0 1 0 0 8 0 989.59097 P11166 P11166 257 264 SLC2A1 Solute carrier family 2, facilitated glucose transporter member 1 yes yes 2 0.023122 44.395 By MS/MS By matching By matching 3 2 2 1.5867 1.6157 36.444 7 Median 1.6138 1.6157 19.652 3 0 Median 0.99119 0.83081 3.1564 2 0 Median 1.6209 1.8118 2.7157 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16757000 7469500 9287600 6609500 2528100 4081400 8242800 4209500 4033200 1904800 731830 1172900 0 0 0 0 0 0 0 0 0 37759 1951 39674 200008;200009;200010;200011;200012;200013;200014 203262;203263 203262 2 VTILGHVQR KIKELVVTQLGYDTRVTILGHVQRGGTPSA LGYDTRVTILGHVQRGGTPSAFDRILASRM R V T Q R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1021.6033 Q01813;B1APP6;V9GY25 Q01813 302 310 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 0.0027284 69.998 By MS/MS By MS/MS 1 1 1.171 1.0599 8.3448 2 Median 1.1859 1.1243 NaN 1 0 Median 1.1563 0.99915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14864000 6610400 8253500 7214800 3163000 4051800 7649100 3447400 4201700 0 0 0 0 0 0 0 0 0 0 0 0 37760 2692 39675 200015;200016 203264;203265;203266 203264 3 VTILQSSDSR AREMPGVWGAGGSLKVTILQSSDSRAFSTV GGSLKVTILQSSDSRAFSTVPLTPVPRPSD K V T S R A 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1104.5775 H0Y5D5;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3;A0A494C0L7 H0Y5D5 472 481 CIZ1 Cip1-interacting zinc finger protein yes no 2 0.0040958 54.416 By MS/MS 1 1.0405 1.1384 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0405 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2243800 1057300 1186500 0 0 0 0 0 0 2243800 1057300 1186500 0 0 0 0 0 0 0 0 0 37761 1028 39676 200017 203267 203267 1 VTIMGIYSIK YCDRYLCDKVVPGNRVTIMGIYSIKKFGLT VPGNRVTIMGIYSIKKFGLTTSRGRDRVGV R V T I K K 0 0 0 0 0 0 0 1 0 3 0 1 1 0 0 1 1 0 1 1 0 0 10 0 1123.6311 P33992;B1AHB1;B1AHB2 P33992 263 272 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 2 0.0070645 48.283 By MS/MS By matching By matching By matching 2 1 1 1 1.0068 0.98045 33.744 5 Median 1.2118 1.1779 29.106 2 0 Median 1.1736 1.0252 NaN 1 0 Median 0.94043 0.98045 NaN 1 0 Median 0.64786 0.56417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18134000 9330600 8803000 4683600 2328700 2354900 6768200 3135800 3632400 6112800 3506200 2606600 569000 359860 209140 0 0 0 0 0 0 37762 2224 39677 200018;200019;200020;200021;200022 203268;203269 203268 2 VTIMGIYSIKK YCDRYLCDKVVPGNRVTIMGIYSIKKFGLT PGNRVTIMGIYSIKKFGLTTSRGRDRVGVG R V T K K F 0 0 0 0 0 0 0 1 0 3 0 2 1 0 0 1 1 0 1 1 0 0 11 1 1251.7261 P33992;B1AHB1;B1AHB2 P33992 263 273 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.0089582 28.806 By MS/MS 1 1.1107 1.1484 NaN 1 Median 1.1107 1.1484 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2208500 1119900 1088600 2208500 1119900 1088600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37763 2224 39678 200023 203270;203271 203270 2 VTIMPKDIQLAR GLFEDTNLCAIHAKRVTIMPKDIQLARRIR AKRVTIMPKDIQLARRIR____________ R V T A R R 1 1 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 12 1 1383.7908 K7EK07;Q71DI3;P84243;P68431;Q16695;Q6NXT2 K7EK07 118 129 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C yes no 2;3 3.1627E-05 133.13 By matching By matching By MS/MS By MS/MS 1 1 9 9 0.91758 0.88076 11.005 20 Median 0.99067 1.0175 NaN 1 0 Median 1.0781 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7335 0.82548 8.5852 9 0 Median 1.1351 0.90685 11.548 9 0 Median 502110000 246910000 255190000 3656300 1719600 1936700 2435600 907350 1528300 0 0 0 0 0 0 181160000 102550000 78613000 314850000 141730000 173120000 37764 1366 39679;39680 200024;200025;200026;200027;200028;200029;200030;200031;200032;200033;200034;200035;200036;200037;200038;200039;200040;200041;200042;200043 203272;203273;203274;203275;203276;203277;203278;203279;203280;203281;203282;203283;203284;203285;203286;203287;203288;203289;203290;203291;203292;203293;203294;203295 203290 447 24 VTIRPAATLVNEGRPR RRCHCELTWSQLSGKVTIRPAATLVNEGRP TIRPAATLVNEGRPRIKTWQADTSTTLSSI K V T P R I 2 3 1 0 0 0 1 1 0 1 1 0 0 0 2 0 2 0 0 2 0 0 16 2 1749.001 Q460N5;H7C5R8 Q460N5 364 379 PARP14 Poly [ADP-ribose] polymerase 14 yes no 4 0.046534 18.988 By MS/MS 1 0.29093 0.32862 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.29093 0.32862 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9115900 7018800 2097200 0 0 0 0 0 0 9115900 7018800 2097200 0 0 0 0 0 0 0 0 0 37765 3017 39681 200044 203296 203296 0 VTIVADHPGIDFGELSK KKNMSAYQVFCKEYRVTIVADHPGIDFGEL IVADHPGIDFGELSKKLAEVWKQLPEKDKL R V T S K K 1 0 0 2 0 0 1 2 1 2 1 1 0 1 1 1 1 0 0 2 0 0 17 0 1796.9309 Q9UGU5 Q9UGU5 423 439 HMGXB4 HMG domain-containing protein 4 yes yes 3 0.029924 23.562 By MS/MS 1 0.56281 0.55063 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56281 0.55063 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9380400 5766800 3613600 0 0 0 0 0 0 9380400 5766800 3613600 0 0 0 0 0 0 0 0 0 37766 4266 39682 200045 203297 203297 1 VTKFYTAPTAIR YPDVNRLWSIVDKYKVTKFYTAPTAIRLLM KYKVTKFYTAPTAIRLLMKFGDEPVTKHSR K V T I R L 2 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 3 0 1 1 0 0 12 1 1366.7609 Q9NR19 Q9NR19 403 414 ACSS2 Acetyl-coenzyme A synthetase, cytoplasmic yes yes 3 0.033679 21.23 By matching By MS/MS By matching 1 5 1 0.96468 0.99785 18.749 7 Median 1.0582 1.0376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78483 0.9169 22.741 5 0 Median 1.1096 1.0119 NaN 1 0 Median 522580000 284790000 237790000 1332900 680580 652360 0 0 0 0 0 0 0 0 0 519790000 283540000 236250000 1456800 570480 886270 37767 4074 39683 200046;200047;200048;200049;200050;200051;200052 203298 203298 1 VTKNEEPSEEEIDAPKPK KEPIEKKVVSSKTKKVTKNEEPSEEEIDAP NEEPSEEEIDAPKPKKMKKEKEMNGETREK K V T P K K 1 0 1 1 0 0 5 0 0 1 0 3 0 0 3 1 1 0 0 1 0 0 18 2 2039.0059 Q9NR30 Q9NR30 114 131 DDX21 Nucleolar RNA helicase 2 yes yes 4 0.010105 22.874 By MS/MS 1 0.63518 0.77482 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63518 0.77482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5477800 3363400 2114400 0 0 0 0 0 0 5477800 3363400 2114400 0 0 0 0 0 0 0 0 0 37768 4076 39684 200053 203299 203299 1 VTKPNIPEAIR DLTSMAPGLVIQAVRVTKPNIPEAIRRNYE QAVRVTKPNIPEAIRRNYELMESEKTKLLI R V T I R R 1 1 1 0 0 0 1 0 0 2 0 1 0 0 2 0 1 0 0 1 0 0 11 1 1236.719 O94905;E5RHW4;E5RJ09 O94905 170 180 ERLIN2 Erlin-2 yes no 2;3 0.00050955 65.305 By MS/MS By MS/MS By MS/MS 2 2 1 0.63538 0.6948 26.258 5 Median 0.59953 0.64228 8.2247 2 0 Median 1.1257 1.0546 1.2638 2 0 Median 0.61158 0.6948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20417000 11910000 8506900 10330000 6391700 3938000 5413000 2530800 2882200 4674300 2987600 1686700 0 0 0 0 0 0 0 0 0 37769 848 39685 200054;200055;200056;200057;200058 203300;203301;203302;203303;203304;203305;203306 203301 7 VTKPNIPEAIRR DLTSMAPGLVIQAVRVTKPNIPEAIRRNYE AVRVTKPNIPEAIRRNYELMESEKTKLLIA R V T R R N 1 2 1 0 0 0 1 0 0 2 0 1 0 0 2 0 1 0 0 1 0 0 12 2 1392.8201 O94905;E5RHW4;E5RJ09 O94905 170 181 ERLIN2 Erlin-2 yes no 3 0.0087707 29.807 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.95135 1.1342 23.345 4 Median 0.66762 0.75263 NaN 1 0 Median 1.0259 1.1366 NaN 1 0 Median 0.88221 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1267 1.2852 NaN 1 0 Median NaN NaN NaN 0 0 Median 15155000 8185300 6969700 11699000 6792900 4906500 704220 337940 366280 867340 380380 486960 0 0 0 1884100 674090 1210000 0 0 0 37770 848 39686 200059;200060;200061;200062 203307;203308;203309;203310 203309 4 VTLAVSDLQK YLQNRSLPQSDPVLKVTLAVSDLQKSLNYW DPVLKVTLAVSDLQKSLNYWCNLLGMKIYE K V T Q K S 1 0 0 1 0 1 0 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 10 0 1072.6128 Q9HC38;F6TLX2;I3L3Q4 Q9HC38 156 165 GLOD4 Glyoxalase domain-containing protein 4 yes no 2 0.00036244 87.308 By MS/MS By MS/MS 2 1 1.0445 0.94573 17.405 3 Median 0.99627 0.91547 4.5992 2 0 Median 1.4668 1.231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87071000 41617000 45454000 69790000 34250000 35540000 17281000 7367000 9914300 0 0 0 0 0 0 0 0 0 0 0 0 37771 4025 39687 200063;200064;200065 203311;203312;203313;203314 203313 4 VTLDPVQLESSLLR VPWIEDCKAKMSELRVTLDPVQLESSLLRS RVTLDPVQLESSLLRSKAMLNEVEKRRSLL R V T L R S 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 2 1 0 0 2 0 0 14 0 1568.8774 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4931 4944 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2 0.00066409 69.01 By MS/MS 1 2.9442 2.8607 NaN 1 Median 2.9442 2.8607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24315000 6451600 17864000 24315000 6451600 17864000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37772 1220 39688 200066 203315;203316 203316 2 VTLDWAKPK AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG EIDGNKVTLDWAKPKGEGGFGGRGGGRGGF K V T P K G 1 0 0 1 0 0 0 0 0 0 1 2 0 0 1 0 1 1 0 1 0 0 9 1 1056.5968 P19338;H7BY16 P19338 640 648 NCL Nucleolin yes no 2 0.026454 69.825 By MS/MS 1 0.85287 0.83317 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85287 0.83317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9704000 5186000 4518000 0 0 0 0 0 0 0 0 0 9704000 5186000 4518000 0 0 0 0 0 0 37773 2063 39689 200067 203317 203317 1 VTLEGPSATAPASSPGLAK PTQPAPRIASAPEPRVTLEGPSATAPASSP GPSATAPASSPGLAKPQMPPGPCSPGPLAQ R V T A K P 4 0 0 0 0 0 1 2 0 0 2 1 0 0 3 3 2 0 0 1 0 0 19 0 1752.9258 Q6P1N0;K7EJY5 Q6P1N0 226 244 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes no 2 0.00015436 40.577 By MS/MS 1 0.78912 0.66259 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78912 0.66259 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1348000 664760 683230 0 0 0 0 0 0 0 0 0 1348000 664760 683230 0 0 0 0 0 0 37774 3153 39690 200068 203318;203319 203318 2 VTLEYRPVIDK WRKHTLSYVDVGTGKVTLEYRPVIDKTLNE GTGKVTLEYRPVIDKTLNEADCATVPPAIR K V T D K T 0 1 0 1 0 0 1 0 0 1 1 1 0 0 1 0 1 0 1 2 0 0 11 1 1331.7449 P31040;D6RFM5;A0A087X1I3 P31040 637 647 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2;3 2.8726E-09 176.65 By MS/MS By MS/MS By matching By matching 4 3 2 2 1.33 1.2097 49.004 11 Median 0.93493 0.94359 25.891 4 0 Median 2.3588 2.2321 55.977 3 0 Median 1.2227 1.2982 12.061 2 0 Median 2.0966 1.9224 72.127 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 249750000 107690000 142060000 179710000 83480000 96226000 51068000 16679000 34389000 16538000 6847700 9689900 2442500 687730 1754800 0 0 0 0 0 0 37775 2200 39691 200069;200070;200071;200072;200073;200074;200075;200076;200077;200078;200079 203320;203321;203322;203323;203324;203325 203321 6 VTLGDTLTR VEVALPPPAEHEVKKVTLGDTLTRRSISQQ EHEVKKVTLGDTLTRRSISQQKSGVSITID K V T T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 3 0 0 1 0 0 9 0 974.53966 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 913 921 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.00058525 111.95 By MS/MS By matching By MS/MS By MS/MS 1 1 2 3 1.0913 0.94804 52.333 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92768 0.94804 NaN 1 0 Median 2.5601 3.8768 NaN 1 0 Median 1.0071 1.0245 11.56 2 0 Median 1.1351 0.91971 16.722 3 0 Median 54002000 25925000 28076000 0 0 0 0 0 0 8295900 3668000 4627900 210770 66677 144090 34132000 16954000 17177000 11363000 5236200 6126900 37776 4560 39692 200080;200081;200082;200083;200084;200085;200086 203326;203327;203328;203329;203330 203327 5 VTLGDTLTRR VEVALPPPAEHEVKKVTLGDTLTRRSISQQ HEVKKVTLGDTLTRRSISQQKSGVSITIDD K V T R R S 0 2 0 1 0 0 0 1 0 0 2 0 0 0 0 0 3 0 0 1 0 0 10 1 1130.6408 S4R3H4;E7EQT4;Q9UKV3;G3V3B0 S4R3H4 913 922 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes no 2 0.0025347 62.582 By MS/MS By MS/MS 2 2 0.68196 0.67587 7.8285 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57531 0.62372 9.2897 2 1 Median 0.7728 0.68837 0.52516 2 0 Median 33159000 20070000 13089000 0 0 0 0 0 0 0 0 0 0 0 0 26394000 16425000 9969100 6764900 3644800 3120100 37777 4560 39693 200087;200088;200089;200090 203331;203332;203333 203333 3 VTLGTQPTVLR FGLNIETGLLSDRKKVTLGTQPTVLRTFRS DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K V T L R T 0 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 11 0 1183.6925 Q16531;F5GY55 Q16531 629 639 DDB1 DNA damage-binding protein 1 yes no 2 8.9653E-07 166.33 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 3 4 6 5 2 2 1.1623 1.0822 27.505 21 Median 1.152 1.1019 4.7658 3 2 Median 1.2539 1.0286 9.7984 4 0 Median 0.70642 0.76292 22.634 6 0 Median 1.4905 1.273 23.025 5 0 Median 0.81687 0.86457 NaN 1 0 Median 1.5668 1.3497 16.69 2 0 Median 202640000 101880000 100760000 42458000 19619000 22839000 36298000 15831000 20467000 96534000 55698000 40837000 21296000 8274800 13021000 4299000 1841200 2457800 1758800 616560 1142200 37778 2985 39694 200091;200092;200093;200094;200095;200096;200097;200098;200099;200100;200101;200102;200103;200104;200105;200106;200107;200108;200109;200110;200111;200112 203334;203335;203336;203337;203338;203339;203340;203341;203342;203343;203344;203345;203346;203347;203348;203349;203350;203351;203352;203353;203354 203345 21 VTLLEGDHVR IPKELPFGDKDTKSKVTLLEGDHVRFNIST DTKSKVTLLEGDHVRFNISTDRRDKLERAT K V T V R F 0 1 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1137.6142 O75534;E9PLT0 O75534 308 317 CSDE1 Cold shock domain-containing protein E1 yes no 2 4.4862E-05 138.1 By MS/MS By MS/MS By MS/MS 1 1 2 1.103 0.97246 21.623 4 Median NaN NaN NaN 0 0 Median 0.80782 0.69998 NaN 1 0 Median 1.0925 1.1692 NaN 1 0 Median 1.1445 0.97246 5.8709 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13153000 5795200 7358200 0 0 0 3818900 1884700 1934100 1772100 747440 1024700 7562400 3163000 4399400 0 0 0 0 0 0 37779 1684 39695 200113;200114;200115;200116 203355;203356;203357;203358;203359 203357 5 VTLLLSSK RLGMMRTGGTIKGSKVTLLLSSKTEMQNMI GTIKGSKVTLLLSSKTEMQNMIELSRRRFE K V T S K T 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 2 1 0 0 1 0 0 8 0 859.53787 Q9NTZ6;A6PVI1;A6PVI0;Q5JX62 Q9NTZ6 69 76 RBM12 RNA-binding protein 12 yes no 2 0.0077197 65.88 By MS/MS By MS/MS By matching 1 6 1 1.2652 1.182 22.108 8 Median 1.1638 1.1475 NaN 1 0 Median 1.3865 1.1815 25.694 6 0 Median 1.1637 1.228 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10017000 4480900 5535800 3542500 1674500 1868000 4718300 2034900 2683400 1755900 771470 984400 0 0 0 0 0 0 0 0 0 37780 4111 39696 200117;200118;200119;200120;200121;200122;200123;200124 203360;203361 203360 2 VTLMLLDQNNR KGPNDALLRWPFNQKVTLMLLDQNNREHVI FNQKVTLMLLDQNNREHVIDAFRPDVTSSS K V T N R E 0 1 2 1 0 1 0 0 0 0 3 0 1 0 0 0 1 0 0 1 0 0 11 0 1315.6918 Q12933 Q12933 430 440 TRAF2 TNF receptor-associated factor 2 yes yes 2 0.00014501 84.213 By MS/MS By MS/MS By matching By matching 2 3 1 1 1.2035 1.0555 34.54 7 Median 1.2122 1.2827 23.456 2 0 Median 1.2447 1.0536 44.827 3 0 Median 0.85175 0.83187 NaN 1 0 Median 1.2035 1.0555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17920000 8061000 9859400 6185400 2489900 3695500 7989100 3655100 4334100 3494900 1777400 1717500 250970 138580 112390 0 0 0 0 0 0 37781 2772 39697 200125;200126;200127;200128;200129;200130;200131 203362;203363;203364 203364 3 VTLMQLPTR IIAFWVPEDKDIPARVTLMQLPTRQEIRVR KDIPARVTLMQLPTRQEIRVRNLFNVVDCK R V T T R Q 0 1 0 0 0 1 0 0 0 0 2 0 1 0 1 0 2 0 0 1 0 0 9 0 1057.5954 P55884 P55884 493 501 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 1.3795E-07 139.88 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1 1.1019 1.03 13.146 9 Median 1.0719 1.03 2.4054 3 0 Median 1.0223 0.86708 2.3281 2 0 Median 1.1649 1.2389 NaN 1 1 Median 1.3244 1.121 16.38 2 0 Median NaN NaN NaN 0 0 Median 1.3101 1.0787 NaN 1 0 Median 95712000 45317000 50396000 58529000 27602000 30927000 27212000 13249000 13964000 7682300 3401300 4281000 1847500 901260 946220 0 0 0 440910 163310 277600 37782 2504 39698;39699 200132;200133;200134;200135;200136;200137;200138;200139;200140;200141;200142 203365;203366;203367;203368;203369;203370;203371;203372;203373;203374;203375;203376;203377 203370 1190 13 VTLNPPGTFLEGVAK TSIASVAGLTAAAYRVTLNPPGTFLEGVAK VTLNPPGTFLEGVAKVGQYTFTAAAVGAVF R V T A K V 1 0 1 0 0 0 1 2 0 0 2 1 0 1 2 0 2 0 0 2 0 0 15 0 1541.8453 K7EQ77;K7EK78;K7EP35;K7EMT4;Q86Y39 K7EQ77 41 55 NDUFA11 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 yes no 2 0.00027335 69.721 By MS/MS By MS/MS 2 1 0.69043 0.63054 37.392 3 Median 0.88167 0.86429 44.593 2 0 Median NaN NaN NaN 0 0 Median 0.62505 0.61021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10530000 5879900 4650500 6982700 3731500 3251200 0 0 0 3547700 2148400 1399300 0 0 0 0 0 0 0 0 0 37783 1368 39700 200143;200144;200145 203378;203379;203380 203378 3 VTLNTLQAWSK LQPSSQNTKAHPSRRVTLNTLQAWSKTTPR PSRRVTLNTLQAWSKTTPRRINLTPLKTDT R V T S K T 1 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 2 1 0 1 0 0 11 0 1259.6874 Q13112 Q13112 484 494 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.00065076 65.347 By MS/MS By matching By matching By matching 1 1 1 1 0.94829 0.95191 21.468 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97085 0.98128 NaN 1 0 Median 1.1095 0.95238 NaN 1 0 Median 0.92625 0.95144 NaN 1 0 Median 0.73154 0.62653 NaN 1 0 Median 14713000 7695600 7017800 0 0 0 0 0 0 12065000 6332400 5732500 1057300 487760 569520 1363500 743770 619700 227770 131660 96114 37784 2786 39701 200146;200147;200148;200149 203381 203381 1 VTLPGLKEDSQILK KGPVNSCQGKNYNLKVTLPGLKEDSQILKI KVTLPGLKEDSQILKIRLLPGHPRRLKVKP K V T L K I 0 0 0 1 0 1 1 1 0 1 3 2 0 0 1 1 1 0 0 1 0 0 14 1 1539.8872 A6NHR9;J3KTL8 A6NHR9 906 919 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 3 0.0037955 32.932 By MS/MS By matching By matching 2 1 1 0.85697 0.94632 8.5679 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79909 0.92106 4.3656 2 0 Median 1.1723 1.0918 NaN 1 0 Median 0.88475 0.94271 NaN 1 0 Median NaN NaN NaN 0 0 Median 32692000 17845000 14847000 0 0 0 0 0 0 29323000 16416000 12907000 545940 229450 316490 2823500 1199600 1623900 0 0 0 37785 518 39702 200150;200151;200152;200153 203382;203383 203383 2 VTLSEGPHHVALFK FPRGSGEMMTRSPVKVTLSEGPHHVALFKD KVTLSEGPHHVALFKDSSREFDLTKEEDLA K V T F K D 1 0 0 0 0 0 1 1 2 0 2 1 0 1 1 1 1 0 0 2 0 0 14 0 1533.8304 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YFD1;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4;A0A2R8YE54 A0A2R8Y3X5 223 236 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 3 0.02941 18.829 By MS/MS By matching 1 1 1.2211 1.127 23.275 2 Median 0.99729 0.95601 NaN 1 0 Median 1.4951 1.3286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5205100 2423900 2781200 3692300 1837100 1855200 1512800 586760 926030 0 0 0 0 0 0 0 0 0 0 0 0 37786 357 39703 200154;200155 203384 203384 1 VTLSFPSTLQTGTGTLK EIHATGFNYQNEDEKVTLSFPSTLQTGTGT LSFPSTLQTGTGTLKIDFVGELNDKMKGFY K V T L K I 0 0 0 0 0 1 0 2 0 0 3 1 0 1 1 2 5 0 0 1 0 0 17 0 1749.9513 E9PLK3;P55786;A6NEC2;E9PP11;E9PJY4;E9PPD4 E9PLK3 125 141 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 2.6204E-10 100.55 By MS/MS By matching 3 2 0.99436 0.95918 35.823 5 Median 0.99436 0.95918 33.843 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2126 1.0629 48.245 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21103000 10793000 10310000 20644000 10583000 10061000 0 0 0 0 0 0 458960 209940 249020 0 0 0 0 0 0 37787 960 39704 200156;200157;200158;200159;200160 203385 203385 1 VTLTLPVLNAAR IVAPISDSPKPPPQRVTLTLPVLNAARTVI PQRVTLTLPVLNAARTVIFVATGEGKAAVL R V T A R T 2 1 1 0 0 0 0 0 0 0 3 0 0 0 1 0 2 0 0 2 0 0 12 0 1266.766 O95336;M0R261 O95336 186 197 PGLS 6-phosphogluconolactonase yes no 2 4.829E-06 125.82 By MS/MS By MS/MS By MS/MS By matching By matching By matching 3 2 1 1 1 1 0.94357 0.8586 30.557 9 Median 0.86732 0.8253 18.675 3 0 Median 1.0139 0.86143 16.988 2 0 Median 0.87515 0.83205 NaN 1 0 Median 1.0569 0.8586 NaN 1 0 Median 1.9287 1.8911 NaN 1 0 Median 1.3481 1.0942 NaN 1 0 Median 83039000 42607000 40432000 70237000 36546000 33691000 6649400 3295700 3353700 3084500 1651500 1433000 139460 68738 70726 1729000 741610 987400 1199500 303360 896110 37788 1764 39705 200161;200162;200163;200164;200165;200166;200167;200168;200169 203386;203387;203388;203389;203390;203391;203392;203393 203389 8 VTLTSEEEAR VPCILGQNGISDLVKVTLTSEEEARLKKSA SDLVKVTLTSEEEARLKKSADTLWGIQKEL K V T A R L 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 10 0 1133.5564 P00338 P00338 306 315 LDHA L-lactate dehydrogenase A chain yes yes 2 2.4464E-15 183.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 11 7 1 1 1 1 1.0801 0.9861 25.058 18 Median 1.0725 1.0284 9.7579 8 2 Median 0.97956 0.83175 31.172 7 1 Median 1.1702 1.1367 NaN 1 0 Median 1.0962 0.91472 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6018 1.3183 NaN 1 0 Median 767740000 357840000 409910000 185210000 81815000 103390000 525560000 250570000 274990000 28151000 12958000 15193000 23937000 11073000 12863000 1922200 318390 1603800 2961100 1098400 1862700 37789 1813 39706 200170;200171;200172;200173;200174;200175;200176;200177;200178;200179;200180;200181;200182;200183;200184;200185;200186;200187;200188;200189;200190;200191 203394;203395;203396;203397;203398;203399;203400;203401;203402;203403;203404;203405;203406;203407;203408;203409;203410;203411;203412;203413;203414;203415;203416;203417;203418;203419;203420;203421;203422;203423;203424 203416 31 VTLVQTLEIQR IGEKLHRTELATQEKVTLVQTLEIQRQQSD TQEKVTLVQTLEIQRQQSDHDAERLREAIA K V T Q R Q 0 1 0 0 0 2 1 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1298.7558 Q15149 Q15149 2565 2575 PLEC Plectin yes yes 2 0.00012526 138.98 By matching By MS/MS 1 1 1.0558 0.93566 20.182 2 Median 1.1114 1.0792 NaN 1 0 Median 1.0029 0.81122 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38569000 18211000 20358000 26660000 12892000 13768000 11909000 5318800 6590300 0 0 0 0 0 0 0 0 0 0 0 0 37790 2933 39707 200192;200193 203425 203425 1 VTMAVPEDLR PVNPNPLATKGSFFKVTMAVPEDLREACSN GSFFKVTMAVPEDLREACSNENVHKEFKKA K V T L R E 1 1 0 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 2 0 0 10 0 1129.5801 P51116;I3L1Z2 P51116 139 148 FXR2 Fragile X mental retardation syndrome-related protein 2 yes no 2 0.039386 45.68 By MS/MS 1 0.74067 0.71857 NaN 1 Median 0.74067 0.71857 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3431500 1967200 1464300 3431500 1967200 1464300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37791 2426 39708 200194 203426 203426 1 VTMEEASR FSDEIEVDFSKPYVRVTMEEASRGTPCERP FSKPYVRVTMEEASRGTPCERPVRVYADGI R V T S R G 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 8 0 921.42258 C9J050;C9JEJ2;P49585;C9J2E1;C9JPY0;C9JVS0;F8WAZ5 C9J050 62 69 PCYT1A Choline-phosphate cytidylyltransferase A yes no 2 0.022207 45.081 By matching By MS/MS By matching 1 1 1 0.96463 0.96654 27.819 3 Median 0.96463 0.96654 NaN 1 0 Median 1.4192 1.2597 NaN 1 0 Median 0.67754 0.72231 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 927360 406950 520410 104280 46370 57907 433090 143330 289760 390000 217250 172750 0 0 0 0 0 0 0 0 0 37792 666 39709 200195;200196;200197 203427 203427 1 VTMLFLGLHNVR FGAPPHAGGGIGLERVTMLFLGLHNVRQTS LERVTMLFLGLHNVRQTSMFPRDPKRLTP_ R V T V R Q 0 1 1 0 0 0 0 1 1 0 3 0 1 1 0 0 1 0 0 2 0 0 12 0 1398.7806 P14868;H7BZ35 P14868 476 487 DARS Aspartate--tRNA ligase, cytoplasmic yes no 2;3 0.0081325 46.462 By MS/MS By matching By matching By MS/MS 4 3 1 2 1.2002 1.1094 8.4184 10 Median 1.1616 1.1634 6.2381 4 1 Median 1.2498 1.0499 6.2779 3 0 Median 1.0607 1.101 NaN 1 0 Median 1.344 1.1591 14.492 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53349000 23703000 29646000 11069000 4919900 6149300 35351000 15596000 19755000 4062700 1898400 2164300 2865600 1288700 1576900 0 0 0 0 0 0 37793 2012 39710 200198;200199;200200;200201;200202;200203;200204;200205;200206;200207 203428;203429;203430;203431 203430 4 VTMNMCRK SVCGLYTYGKPVPGRVTMNMCRKYRNPSNC GKPVPGRVTMNMCRKYRNPSNCYGEESNAV R V T R K Y 0 1 1 0 1 0 0 0 0 0 0 1 2 0 0 0 1 0 0 1 0 0 8 1 1038.4773 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 264 271 yes yes 2 0.018945 52.683 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 37794 734 39711 200208 203432 203432 256 1 VTMQNLNDR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD LSGNEKVTMQNLNDRLASYLDKVRALEESN K V T D R L 0 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1089.5237 P13645;CON__P13645;CON__Q7Z3Y7;Q7Z3Y7;CON__Q148H6;Q7Z3Y8;Q7Z3Z0;CON__Q7Z3Z0;CON__Q7Z3Y8;CON__Q7Z3Y9;Q7Z3Y9;CON__P02535-1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;P02533;CON__P02533 P13645 148 156 KRT10;KRT28;KRT27;KRT25;KRT26;KRT16;KRT14 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 2 1.7339E-59 205.57 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 12 15 12 16 9 7 0.02404 0.022285 113.08 63 Median 0.021621 0.020547 85.815 12 12 Median 0.029296 0.024566 129.95 12 11 Median 0.034328 0.037556 80.005 10 9 Median 0.023082 0.019526 106.14 16 16 Median 0.020472 0.021093 112.76 8 7 Median 0.036294 0.029804 165.1 5 5 Median 1427200000 1390500000 36635000 299120000 293980000 5139000 192040000 181510000 10527000 151090000 145400000 5693700 333790000 329670000 4125900 287950000 279810000 8137200 163160000 160150000 3011900 + 37795 756;739;754;740 39712;39713 200209;200210;200211;200212;200213;200214;200215;200216;200217;200218;200219;200220;200221;200222;200223;200224;200225;200226;200227;200228;200229;200230;200231;200232;200233;200234;200235;200236;200237;200238;200239;200240;200241;200242;200243;200244;200245;200246;200247;200248;200249;200250;200251;200252;200253;200254;200255;200256;200257;200258;200259;200260;200261;200262;200263;200264;200265;200266;200267;200268;200269;200270;200271;200272;200273;200274;200275;200276;200277;200278;200279 203433;203434;203435;203436;203437;203438;203439;203440;203441;203442;203443;203444;203445;203446;203447;203448;203449;203450;203451;203452;203453;203454;203455;203456;203457;203458;203459;203460;203461;203462;203463;203464;203465;203466;203467;203468;203469;203470;203471;203472;203473;203474;203475;203476;203477;203478;203479;203480;203481;203482;203483;203484;203485;203486;203487;203488;203489;203490;203491;203492;203493;203494;203495;203496;203497;203498;203499;203500;203501;203502;203503;203504;203505;203506;203507;203508;203509;203510;203511 203454 262 79 VTMQNLNDRLASYLDKVR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD QNLNDRLASYLDKVRALEESNYELEGKIKE K V T V R A 1 2 2 2 0 1 0 0 0 0 3 1 1 0 0 1 1 0 1 2 0 0 18 2 2135.1157 P13645;CON__P13645;CON__P08779;P08779;P02533;CON__P02533 P13645 148 165 KRT10;KRT16;KRT14 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 14 no no 3 0.039953 38.613 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9796000 9796000 0 0 0 0 9796000 9796000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 37796 756;739;754 39714 200280 203512 203512 1 VTNEFVHINNLK WAISPRGAGWLFGAKVTNEFVHINNLKLIC GAKVTNEFVHINNLKLICRAHQLVHEGYKF K V T L K L 0 0 3 0 0 0 1 0 1 1 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1426.7569 O00743 O00743 220 231 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes yes 2;3 0.00036232 133.44 By MS/MS By MS/MS By MS/MS 2 2 2 1.0692 1.0088 9.2939 6 Median 1.0558 0.95704 2.8235 2 0 Median 1.3828 1.1622 2.9346 2 0 Median 1.045 1.0088 3.4378 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99188000 47818000 51370000 87045000 41951000 45094000 6675600 3025600 3650000 5467000 2841700 2625300 0 0 0 0 0 0 0 0 0 37797 1476 39715 200281;200282;200283;200284;200285;200286 203513;203514;203515;203516;203517;203518;203519;203520 203515 8 VTNEYNESLLYSPEEPK QGNLSLPLNRELVEKVTNEYNESLLYSPEE NEYNESLLYSPEEPKILFSIREPIANRVFS K V T P K I 0 0 2 0 0 0 4 0 0 0 2 1 0 0 2 2 1 0 2 1 0 0 17 0 2010.9422 A0A0C4DGV3;B7Z8V7;Q4G0N4 A0A0C4DGV3 161 177 NADK2 NAD kinase 2, mitochondrial yes no 2 3.0722E-05 53.252 By MS/MS By matching 1 1 0.76138 0.78179 31.552 2 Median 0.66188 0.62545 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87583 0.97719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3661700 2055700 1605900 2426700 1411600 1015100 0 0 0 1235000 644180 590840 0 0 0 0 0 0 0 0 0 37798 255 39716 200287;200288 203521 203521 1 VTNGAFTGEISPGMIK KLDPKIAVAAQNCYKVTNGAFTGEISPGMI TNGAFTGEISPGMIKDCGATWVVLGHSERR K V T I K D 1 0 1 0 0 0 1 3 0 2 0 1 1 1 1 1 2 0 0 1 0 0 16 0 1620.8181 P60174 P60174 107 122 TPI1 Triosephosphate isomerase yes yes 2 5.2981E-10 113.65 By MS/MS By MS/MS By MS/MS By MS/MS 6 3 1 1 0.88316 0.80854 22.551 11 Median 0.86607 0.79839 24.287 6 0 Median 1.0316 0.85642 22.738 3 0 Median 0.9151 0.85843 NaN 1 0 Median 1.0615 0.8759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 859330000 446480000 412840000 772620000 403510000 369110000 40286000 19035000 21251000 45588000 23511000 22077000 835160 425350 409810 0 0 0 0 0 0 37799 2523 39717;39718 200289;200290;200291;200292;200293;200294;200295;200296;200297;200298;200299 203522;203523;203524;203525;203526;203527;203528;203529;203530;203531;203532;203533;203534;203535;203536 203531 1204 15 VTNLHLMLQLVR WFEVGDENSGWSAQKVTNLHLMLQLVRVLV AQKVTNLHLMLQLVRVLVSPTNPPGATSSC K V T V R V 0 1 1 0 0 1 0 0 1 0 4 0 1 0 0 0 1 0 0 2 0 0 12 0 1435.8333 O60763 O60763 277 288 USO1 General vesicular transport factor p115 yes yes 2 0.032829 27.115 By MS/MS 1 1.4174 1.2104 NaN 1 Median NaN NaN NaN 0 0 Median 1.4174 1.2104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3074200 1196200 1878000 0 0 0 3074200 1196200 1878000 0 0 0 0 0 0 0 0 0 0 0 0 37800 1630 39719 200300 203537 203537 1 VTNLLMLK VTEGEVISLGLPFGKVTNLLMLKGKNQAFI LGLPFGKVTNLLMLKGKNQAFIEMNTEEAA K V T L K G 0 0 1 0 0 0 0 0 0 0 3 1 1 0 0 0 1 0 0 1 0 0 8 0 930.55722 A0A0U1RRM4;P26599;A6NLN1;K7EKJ7;K7ES59;K7ELW5;O95758;X6R242 A0A0U1RRM4 85 92 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 2 0.0050239 78.178 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 3 5 5 5 3 1.1426 1.053 9.8326 23 Median 1.3494 1.2619 4.0057 2 0 Median 1.1766 1.0005 10.326 3 0 Median 1.0126 0.96664 10.433 5 0 Median 1.2834 1.0561 5.3272 5 0 Median 1.0364 1.06 3.687 5 0 Median 1.2127 1.002 8.1934 3 0 Median 434180000 211750000 222430000 26587000 11656000 14931000 8686400 3915000 4771400 317240000 158570000 158680000 19898000 8752400 11145000 53261000 24851000 28410000 8504300 4011600 4492700 37801 312;1791 39720 200301;200302;200303;200304;200305;200306;200307;200308;200309;200310;200311;200312;200313;200314;200315;200316;200317;200318;200319;200320;200321;200322;200323 203538;203539;203540;203541;203542;203543;203544;203545;203546;203547;203548;203549;203550;203551;203552;203553;203554;203555;203556;203557 203546 20 VTNLSEDTR SMQPNRRADDNATIRVTNLSEDTRETDLQE DNATIRVTNLSEDTRETDLQELFRPFGSIS R V T T R E 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 9 0 1033.504 O75821;K7ER90;K7EL20;K7ENA8 O75821 243 251 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 0.00083103 95.502 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0625 0.9787 8.8289 4 Median 1.0882 1.1011 NaN 1 0 Median 1.0535 0.91771 NaN 1 0 Median 0.97933 1.0342 NaN 1 0 Median 1.0715 0.9262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9563100 4639800 4923300 1728700 825030 903650 6181000 3060000 3120900 1123600 508010 615570 529860 246740 283120 0 0 0 0 0 0 37802 1697 39721 200324;200325;200326;200327 203558;203559;203560;203561;203562 203560 5 VTNQLQYLHK NPPPPEVSNPKKPGRVTNQLQYLHKVVMKA KKPGRVTNQLQYLHKVVMKALWKHQFAWPF R V T H K V 0 0 1 0 0 2 0 0 1 0 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1242.6721 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2;E9PIQ3;H0Y799;A0A140T9X8;E9PKQ9 H0Y6K2 81 90 BRD2 Bromodomain-containing protein 2 yes no 2;3 0.0022391 60.973 By MS/MS By matching By MS/MS By MS/MS 2 2 3 3 1.2967 1.2154 35.152 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.172 1.2457 0.87636 2 0 Median 1.3797 1.1836 1.1516 2 0 Median 1.2906 1.3197 45.813 3 0 Median 1.3028 1.0724 37.583 3 1 Median 45182000 19826000 25356000 0 0 0 0 0 0 6464000 2732900 3731100 2603600 869680 1733900 29921000 13214000 16707000 6193300 3009800 3183500 37803 279 39722 200328;200329;200330;200331;200332;200333;200334;200335;200336;200337 203563;203564;203565;203566;203567;203568 203566 5 VTNSTELQHQLDK LQLKLSRLEEQLKEKVTNSTELQHQLDKTK EKVTNSTELQHQLDKTKQQHQEQQALQQST K V T D K T 0 0 1 1 0 2 1 0 1 0 2 1 0 0 0 1 2 0 0 1 0 0 13 0 1511.758 Q15075 Q15075 473 485 EEA1 Early endosome antigen 1 yes yes 2;3 0.00035808 55.724 By MS/MS By MS/MS 1 2 1.1955 1.0365 3.6863 3 Median 1.0548 1.0148 NaN 1 0 Median 1.2123 1.063 3.5788 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9578100 4196800 5381300 4161000 1948900 2212100 5417200 2247900 3169200 0 0 0 0 0 0 0 0 0 0 0 0 37804 2926 39723 200338;200339;200340 203569;203570;203571;203572 203570 4 VTNYIFDSLR IKKDPYTATMIGFSKVTNYIFDSLRGSDPS IGFSKVTNYIFDSLRGSDPSTHQRPPSEMA K V T L R G 0 1 1 1 0 0 0 0 0 1 1 0 0 1 0 1 1 0 1 1 0 0 10 0 1226.6295 Q8TC07;C9JA93 Q8TC07 253 262 TBC1D15 TBC1 domain family member 15 yes no 2 0.0014621 65.305 By MS/MS By matching 1 1 0.96199 0.88926 3.5746 2 Median 0.92083 0.91203 NaN 1 0 Median 1.005 0.86707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4721800 2281300 2440500 3233000 1593700 1639400 1488700 687610 801130 0 0 0 0 0 0 0 0 0 0 0 0 37805 3463 39724 200341;200342 203573 203573 1 VTPDIEESLLEPENEK EGFKNTLETSSLNFKVTPDIEESLLEPENE TPDIEESLLEPENEKILDILGETCKSEPVK K V T E K I 0 0 1 1 0 0 5 0 0 1 2 1 0 0 2 1 1 0 0 1 0 0 16 0 1840.8942 Q14151 Q14151 200 215 SAFB2 Scaffold attachment factor B2 yes yes 2 6.1993E-06 71.176 By MS/MS By MS/MS By matching 1 3 2 0.68086 0.6964 22.494 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70316 0.75874 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67634 0.69395 29.218 3 2 Median 0.72075 0.61322 18.485 2 0 Median 35212000 20204000 15008000 0 0 0 0 0 0 6029900 3601600 2428300 0 0 0 28222000 16016000 12206000 960250 586960 373290 37806 2859 39725 200343;200344;200345;200346;200347;200348 203574;203575;203576 203576 3 VTPDTDWAR ICTTSAIQNRFKYARVTPDTDWARLLQDHP RFKYARVTPDTDWARLLQDHPWLLSQNLVV R V T A R L 1 1 0 2 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 0 9 0 1059.4985 P53396;K7ESG8 P53396 34 42 ACLY ATP-citrate synthase yes no 2 0.0045216 60.436 By MS/MS By MS/MS 1 1 1.0577 0.94472 2.3498 2 Median 0.99738 0.96055 NaN 1 0 Median 1.1216 0.92915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41692000 19454000 22239000 14257000 6755000 7502100 27435000 12699000 14736000 0 0 0 0 0 0 0 0 0 0 0 0 37807 2467 39726 200349;200350 203577;203578;203579;203580 203577 4 VTPENAGQWKPDELQVLEK RVALSPKTNQTLQLKVTPENAGQWKPDELQ NAGQWKPDELQVLEKFFETRVAGPPFKANT K V T E K F 1 0 1 1 0 2 3 1 0 0 2 2 0 0 2 0 1 1 0 2 0 0 19 1 2180.1113 O60244;H7C3E5 O60244 1265 1283 MED14 Mediator of RNA polymerase II transcription subunit 14 yes no 3 0.0065863 24.3 By MS/MS 2 0.69436 0.79504 0.72497 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69436 0.79504 0.72497 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15520000 9285300 6234900 0 0 0 0 0 0 15520000 9285300 6234900 0 0 0 0 0 0 0 0 0 37808 1606 39727 200351;200352 203581;203582 203582 2 VTPEPGAGPTQGLLR RGLLASDLNTDGDMRVTPEPGAGPTQGLLR VTPEPGAGPTQGLLRATEATAMAMGRGEGL R V T L R A 1 1 0 0 0 1 1 3 0 0 2 0 0 0 3 0 2 0 0 1 0 0 15 0 1491.8045 Q86YP4;C9JVY3;V9GY85;H7C3H1;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5 Q86YP4 48 62 GATAD2A Transcriptional repressor p66-alpha yes no 2 6.7739E-07 96.64 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.60108 0.56158 33.276 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62085 0.6268 NaN 1 0 Median 0.46877 0.39174 NaN 1 0 Median 0.84128 0.85768 NaN 1 1 Median 0.58193 0.50316 NaN 1 0 Median 40992000 24249000 16744000 0 0 0 0 0 0 27490000 16558000 10932000 2425700 1452900 972810 10510000 5887100 4622500 567320 351300 216020 37809 3309 39728 200353;200354;200355;200356 203583;203584;203585;203586;203587;203588 203586 6 VTPFILK ISSIRNFLIYVALLRVTPFILKKLDSI___ LIYVALLRVTPFILKKLDSI__________ R V T L K K 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 7 0 816.51093 Q8N4H5 Q8N4H5 40 46 TOMM5 Mitochondrial import receptor subunit TOM5 homolog yes yes 2 0.018479 62.714 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.2113 1.0469 22.515 5 Median 0.98791 0.84967 NaN 1 0 Median 1.3013 1.0469 NaN 1 0 Median 1.2113 1.2312 NaN 1 0 Median 1.1272 0.84155 NaN 1 0 Median 1.3266 1.4022 NaN 1 0 Median NaN NaN NaN 0 0 Median 295400000 140700000 154700000 178160000 90493000 87663000 89272000 37776000 51497000 5997400 2549000 3448400 17639000 8143000 9496100 4332900 1741900 2591000 0 0 0 37810 3373 39729 200357;200358;200359;200360;200361 203589;203590 203589 2 VTPFILKK ISSIRNFLIYVALLRVTPFILKKLDSI___ IYVALLRVTPFILKKLDSI___________ R V T K K L 0 0 0 0 0 0 0 0 0 1 1 2 0 1 1 0 1 0 0 1 0 0 8 1 944.60589 Q8N4H5 Q8N4H5 40 47 TOMM5 Mitochondrial import receptor subunit TOM5 homolog yes yes 2 0.023461 49.358 By MS/MS 1 1.4405 1.023 NaN 1 Median NaN NaN NaN 0 0 Median 1.4405 1.023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4287900 1789600 2498200 0 0 0 4287900 1789600 2498200 0 0 0 0 0 0 0 0 0 0 0 0 37811 3373 39730 200362 203591 203591 1 VTPGSGALQGQSVSVWELLFYR HQLSEELRCALRDARVTPGSGALQGQSVSV LQGQSVSVWELLFYREVSEDRRQDLLSRYR R V T Y R E 1 1 0 0 0 2 1 3 0 0 3 0 0 1 1 3 1 1 1 3 0 0 22 0 2393.2379 P58107;A0A075B730 P58107 2440 2461 EPPK1 Epiplakin yes no 2 1.0432E-14 96.414 By matching By MS/MS By matching 1 1 1 1.1862 1.0629 8.236 3 Median 1.1977 1.1787 NaN 1 0 Median 1.1862 1.0017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0207 1.0629 NaN 1 0 Median NaN NaN NaN 0 0 Median 1898900 823580 1075300 204980 92876 112110 1523500 650510 873020 0 0 0 0 0 0 170390 80196 90193 0 0 0 37812 2520 39731 200363;200364;200365 203592;203593 203593 2 VTPLGAGQDVGR ______________________________ EIRVTPLGAGQDVGRSCILVSIAGKNVMLD R V T G R S 1 1 0 1 0 1 0 3 0 0 1 0 0 0 1 0 1 0 0 2 0 0 12 0 1168.62 C9J979;Q5TA45;Q96HV7;E9PMA2;H0YE15;E9PJG0;E9PKA4;E9PNS4;A0A087WXT8 C9J979 6 17 CPSF3L Integrator complex subunit 11 yes no 2 0.04558 44.425 By MS/MS 1 1.2847 1.3708 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2847 1.3708 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2220500 977450 1243000 0 0 0 0 0 0 2220500 977450 1243000 0 0 0 0 0 0 0 0 0 37813 681 39732 200366 203594 203594 1 VTPNEGLTVSFPFGK HKLEEGEVAMGRVVKVTPNEGLTVSFPFGK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE K V T G K I 0 0 1 0 0 0 1 2 0 0 1 1 0 2 2 1 2 0 0 2 0 0 15 0 1591.8246 Q14690;A0A3B3IUD7 Q14690 1240 1254 PDCD11 Protein RRP5 homolog yes no 2 0.00026146 70.488 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.2069 1.0724 15.036 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8156 0.88756 2.0559 2 0 Median 1.2279 1.1294 6.7963 2 0 Median 1.2275 1.2848 NaN 1 1 Median 1.2403 1.0685 NaN 1 0 Median 37299000 19118000 18181000 0 0 0 0 0 0 26014000 13802000 12213000 736160 327940 408220 10060000 4714300 5345300 488690 273660 215030 37814 448 39733 200367;200368;200369;200370;200371;200372;200373 203595;203596;203597;203598;203599;203600;203601;203602 203600 8 VTPPAVTGSPEFER SYFALQVGKARLKYKVTPPAVTGSPEFERV KVTPPAVTGSPEFERVFRAQQNCVEFYPIF K V T E R V 1 1 0 0 0 0 2 1 0 0 0 0 0 1 3 1 2 0 0 2 0 0 14 0 1485.7464 Q99735 Q99735 35 48 MGST2 Microsomal glutathione S-transferase 2 yes yes 2 1.7169E-07 152.07 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 0.81325 0.67899 27.513 9 Median 0.67804 0.65982 1.8277 3 2 Median 0.81325 0.65066 5.2752 3 0 Median 1.138 1.1875 30.92 2 1 Median 0.93874 0.7412 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83447000 45765000 37682000 26726000 17439000 9287000 31572000 16713000 14858000 24390000 11227000 13163000 759320 385600 373720 0 0 0 0 0 0 37815 3767 39734 200374;200375;200376;200377;200378;200379;200380;200381;200382;200383 203603;203604;203605;203606;203607;203608;203609;203610;203611;203612;203613;203614;203615 203603 13 VTPPEGYEVVTVFPK FVEDQIYCEKHARERVTPPEGYEVVTVFPK VTPPEGYEVVTVFPK_______________ R V T P K - 0 0 0 0 0 0 2 1 0 0 0 1 0 1 3 0 2 0 1 4 0 0 15 0 1660.8712 O00151 O00151 315 329 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 4.6488E-10 108.56 By MS/MS By matching By MS/MS 3 3 2 0.61604 0.59218 34.225 8 Median 0.56966 0.53547 13.125 3 0 Median 0.77156 0.65193 26.131 3 0 Median 0.90723 0.88821 55.002 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36453000 21913000 14540000 30676000 18961000 11714000 920300 594080 326210 4856900 2357400 2499500 0 0 0 0 0 0 0 0 0 37816 1442 39735 200384;200385;200386;200387;200388;200389;200390;200391 203616;203617;203618;203619;203620;203621 203618 6 VTPQSLFILFGVYGDVQR AGNSVLLVSNLNPERVTPQSLFILFGVYGD QSLFILFGVYGDVQRVKILFNKKENALVQM R V T Q R V 0 1 0 1 0 2 0 2 0 1 2 0 0 2 1 1 1 0 1 3 0 0 18 0 2038.0888 A0A0U1RRM4;P26599;A6NLN1;A0A0D9SF20 A0A0U1RRM4 406 423 PTBP1 Polypyrimidine tract-binding protein 1 yes no 2;3 1.1568E-05 52.344 By matching By MS/MS 1 3 0.85902 0.88978 16.29 4 Median NaN NaN NaN 0 0 Median 1.3443 1.1993 NaN 1 0 Median 0.84809 0.8919 3.7586 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2603900 1399200 1204700 0 0 0 265040 120550 144490 2338900 1278700 1060200 0 0 0 0 0 0 0 0 0 37817 312 39736 200392;200393;200394;200395 203622;203623;203624 203623 3 VTPTRTEIIILATR TRELAEDGYSGVEVRVTPTRTEIIILATRT RVTPTRTEIIILATRTQNVLGEKGRRIREL R V T T R T 1 2 0 0 0 0 1 0 0 3 1 0 0 0 1 0 4 0 0 1 0 0 14 1 1582.9406 P23396;E9PL09;E9PPU1;F2Z2S8;H0YCJ7;H0YEU2;E9PQ96;E9PJH4;H0YF32;E9PK82 P23396 41 54 RPS3 40S ribosomal protein S3 yes no 2;3 1.3972E-06 118.37 By MS/MS By MS/MS By matching By MS/MS By MS/MS 8 4 1 3 1 1.1074 1.1123 19.75 17 Median 0.99814 1.0207 17.789 8 0 Median 1.1153 0.98605 17.565 4 0 Median 1.1605 1.2032 NaN 1 0 Median 1.3387 1.1987 23.386 3 0 Median 1.2548 1.3608 NaN 1 0 Median NaN NaN NaN 0 0 Median 144160000 68648000 75507000 120360000 57448000 62908000 13004000 6242200 6762000 1163800 487030 676780 1253700 556730 696940 8377600 3914500 4463100 0 0 0 37818 2112 39737 200396;200397;200398;200399;200400;200401;200402;200403;200404;200405;200406;200407;200408;200409;200410;200411;200412 203625;203626;203627;203628;203629;203630;203631;203632;203633 203629 9 VTPVEVMPVFPDFK EDAQKSISQHYSKPRVTPVEVMPVFPDFKM RVTPVEVMPVFPDFKMWINPCAQVIFDSDP R V T F K M 0 0 0 1 0 0 1 0 0 0 0 1 1 2 3 0 1 0 0 4 0 0 14 0 1603.832 Q8N7H5;B4DGJ5 Q8N7H5 199 212 PAF1 RNA polymerase II-associated factor 1 homolog yes no 2 0.0054849 37.327 By MS/MS By matching 1 1 0.74528 0.69944 1.1216 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67737 0.69391 NaN 1 0 Median 0.82001 0.70501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9592500 5688900 3903600 0 0 0 0 0 0 8805200 5274500 3530700 787290 414370 372920 0 0 0 0 0 0 37819 3393 39738 200413;200414 203634;203635 203635 2 VTQALNVLTTTFGR MDHVEESLCSAATPKVTQALNVLTTTFGRC KVTQALNVLTTTFGRCQSPWTEALWVRLSP K V T G R C 1 1 1 0 0 1 0 1 0 0 2 0 0 1 0 0 4 0 0 2 0 0 14 0 1519.8358 Q6PJG6 Q6PJG6 214 227 BRAT1 BRCA1-associated ATM activator 1 yes yes 2 0.0022275 44.188 By MS/MS By MS/MS 1 1 1.2302 1.1469 4.5965 2 Median 1.1386 1.1102 NaN 1 0 Median 1.3291 1.1848 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4122000 1843700 2278300 3004200 1369000 1635300 1117700 474680 643060 0 0 0 0 0 0 0 0 0 0 0 0 37820 3174 39739 200415;200416 203636;203637;203638 203636 3 VTQDATPGSALDK FSYGSGLAATLYSLKVTQDATPGSALDKIT LKVTQDATPGSALDKITASLCDLKSRLDSR K V T D K I 2 0 0 2 0 1 0 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1301.6463 Q01581 Q01581 388 400 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes yes 2 1.9408E-05 94.616 By MS/MS By MS/MS 1 1 1.1357 1.0315 4.5801 2 Median 1.0296 0.99865 NaN 1 0 Median 1.2528 1.0655 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7526200 3542200 3984000 1872800 831820 1040900 5653500 2710400 2943100 0 0 0 0 0 0 0 0 0 0 0 0 37821 2687 39740 200417;200418 203639;203640;203641 203641 3 VTQDELK ERDARTLLAKNLPYKVTQDELKEVFEDAAE LAKNLPYKVTQDELKEVFEDAAEIRLVSKD K V T L K E 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 7 0 831.4338 P19338;H7BY16 P19338 404 410 NCL Nucleolin yes no 2 0.0061063 94.407 By MS/MS By matching By matching By matching By matching 2 2 1 1 1 1.1839 1.0946 6.915 6 Median NaN NaN NaN 0 0 Median 1.2155 1.0723 NaN 1 0 Median 1.1457 1.2142 3.5951 2 0 Median 1.2415 1.0846 NaN 1 0 Median 1.0733 1.1047 NaN 1 0 Median 1.2042 1.0334 NaN 1 0 Median 4915400 2261400 2654100 0 0 0 2509400 1168200 1341200 1348400 625400 723040 490660 211720 278940 397040 182600 214440 169900 73420 96476 37822 2063 39741 200419;200420;200421;200422;200423;200424;200425 203642;203643;203644 203643 3 VTQDELKEVFEDAAEIR ERDARTLLAKNLPYKVTQDELKEVFEDAAE QDELKEVFEDAAEIRLVSKDGKSKGIAYIE K V T I R L 2 1 0 2 0 1 4 0 0 1 1 1 0 1 0 0 1 0 0 2 0 0 17 1 1990.9848 P19338;H7BY16 P19338 404 420 NCL Nucleolin yes no 2;3 4.819E-09 82.248 By MS/MS By matching By MS/MS By matching By MS/MS By MS/MS 8 4 4 2 7 4 1.0787 1.1041 37.367 29 Median 1.0742 1.1014 6.0715 8 3 Median 0.59656 0.54292 73.355 4 0 Median 1.1406 1.2519 19.702 4 0 Median 1.2326 1.2086 27.039 2 0 Median 1.178 1.3025 22.644 7 0 Median 1.0198 0.9227 6.5656 4 0 Median 206520000 92635000 113890000 72294000 32130000 40164000 3842200 2180300 1661900 28144000 12118000 16026000 179370 82847 96520 70036000 31250000 38786000 32026000 14874000 17152000 37823 2063 39742 200426;200427;200428;200429;200430;200431;200432;200433;200434;200435;200436;200437;200438;200439;200440;200441;200442;200443;200444;200445;200446;200447;200448;200449;200450;200451;200452;200453;200454 203645;203646;203647;203648;203649;203650;203651;203652;203653;203654;203655;203656;203657;203658;203659;203660;203661;203662;203663;203664;203665;203666;203667;203668;203669;203670;203671 203652 27 VTQDSLAQATQLAEER IIAVIYGRYLRKLTKVTQDSLAQATQLAEE TQDSLAQATQLAEERIGNVRTVRAFGKEMT K V T E R I 3 1 0 1 0 3 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 16 0 1758.8748 Q9NRK6 Q9NRK6 342 357 ABCB10 ATP-binding cassette sub-family B member 10, mitochondrial yes yes 2 1.0711E-20 141.38 By MS/MS 2 0.84594 0.84157 9.884 2 Median 0.84594 0.84157 9.884 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13012000 7507300 5504500 13012000 7507300 5504500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37824 4083 39743 200455;200456 203672;203673 203673 2 VTQEIVTER SFPVPKSLQEANAEKVTQEIVTERSVSSRQ EANAEKVTQEIVTERSVSSRQAQKVATPLP K V T E R S 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 2 0 0 2 0 0 9 0 1073.5717 Q14126 Q14126 902 910 DSG2 Desmoglein-2 yes yes 2 0.0044158 76.827 By MS/MS 2 2.2049 2.3144 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2049 2.3144 NaN 1 1 Median NaN NaN NaN 0 0 Median 2444400 844710 1599700 0 0 0 0 0 0 0 0 0 0 0 0 2444400 844710 1599700 0 0 0 37825 2855 39744 200457;200458 203674;203675 203674 2 VTQILQSPAFR PDLRQDFNMMEQRKRVTQILQSPAFREDLE QRKRVTQILQSPAFREDLECLIQEQMKKGH R V T F R E 1 1 0 0 0 2 0 0 0 1 1 0 0 1 1 1 1 0 0 1 0 0 11 0 1258.7034 Q9UEY8 Q9UEY8 58 68 ADD3 Gamma-adducin yes yes 2 0.0026182 52.49 By MS/MS By matching 1 1 0.88716 0.83173 26.184 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6776 0.69115 NaN 1 0 Median 1.1615 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12334000 6630500 5703700 0 0 0 0 0 0 9843000 5514800 4328100 2491200 1115600 1375500 0 0 0 0 0 0 37826 4257 39745 200459;200460 203676 203676 1 VTQLDLDGPK IDIENPNRVAQTTKKVTQLDLDGPKELSRR QTTKKVTQLDLDGPKELSRREREEIEKQKA K V T P K E 0 0 0 2 0 1 0 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 10 0 1084.5764 Q13442 Q13442 96 105 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2 1.0234E-05 152.47 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0181 0.89825 4.3443 4 Median 0.94433 0.8742 NaN 1 0 Median 1.1295 0.95333 NaN 1 1 Median 0.98462 0.92297 NaN 1 0 Median 1.0528 0.87212 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 48481000 23732000 24748000 26265000 13128000 13137000 3151200 1495000 1656200 15850000 7632800 8217400 3214200 1476800 1737300 0 0 0 0 0 0 37827 2818 39746 200461;200462;200463;200464 203677;203678;203679;203680;203681 203678 5 VTQLDPKEEEVSLQGINTR RVSSLAERVDRLQVKVTQLDPKEEEVSLQG DPKEEEVSLQGINTRKAFRSSTIQDQKLFD K V T T R K 0 1 1 1 0 2 3 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 19 1 2155.1121 Q9Y6W5 Q9Y6W5 79 97 WASF2 Wiskott-Aldrich syndrome protein family member 2 yes yes 3 7.1076E-10 86.727 By MS/MS By MS/MS 1 1 0.90348 0.89163 6.505 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87891 0.9336 NaN 1 0 Median 0.92873 0.85155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11290000 5828700 5461100 0 0 0 0 0 0 9875900 5150900 4725000 1413900 677790 736080 0 0 0 0 0 0 37828 4498 39747 200465;200466 203682;203683;203684 203682 3 VTQLLPQNVHSHNSISKPQK KSQDVQRESEPLREKVTQLLPQNVHSHNSI PQNVHSHNSISKPQKGGPLNKEYTNWEAKE K V T Q K G 0 0 2 0 0 3 0 0 2 1 2 2 0 0 2 3 1 0 0 2 0 0 20 1 2254.2182 Q9UNY4 Q9UNY4 258 277 TTF2 Transcription termination factor 2 yes yes 3;4 0.00047561 30.684 By MS/MS By MS/MS 1 2 0.91473 0.87135 17.744 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9621 1.1009 NaN 1 0 Median 0.86396 0.82298 8.0763 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6247300 3376600 2870800 0 0 0 0 0 0 2590400 1447300 1143100 3656900 1929300 1727600 0 0 0 0 0 0 37829 4352 39748 200467;200468;200469 203685;203686;203687;203688;203689 203688 5 VTQNLPMK STYGVTKGKVCFEAKVTQNLPMKEGCTEVS KVCFEAKVTQNLPMKEGCTEVSLLRVGWSV K V T M K E 0 0 1 0 0 1 0 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 8 0 929.50044 Q1KMD3;H3BQZ7 Q1KMD3 298 305 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.0069954 68.915 By MS/MS By MS/MS By MS/MS 2 2 1 0.84856 0.7007 28.672 5 Median NaN NaN NaN 0 0 Median 0.88884 0.76183 24.842 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63152 0.62429 47.673 2 0 Median 0.84856 0.7007 NaN 1 0 Median 18418000 10691000 7727000 0 0 0 4380100 2688000 1692100 0 0 0 0 0 0 12289000 7123400 5165200 1749700 880090 869660 37830 3002 39749 200470;200471;200472;200473;200474 203690;203691;203692;203693;203694 203691 5 VTQNLPMKEGCTEVSLLR STYGVTKGKVCFEAKVTQNLPMKEGCTEVS NLPMKEGCTEVSLLRVGWSVDFSRPQLGED K V T L R V 0 1 1 0 1 1 2 1 0 0 3 1 1 0 1 1 2 0 0 2 0 0 18 1 2074.0551 Q1KMD3;H3BQZ7 Q1KMD3 298 315 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 0.0037819 38.824 By matching By MS/MS 1 2 0.87779 0.96544 59.191 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5817 2.5383 NaN 1 0 Median 0.85517 0.91446 7.6714 2 0 Median NaN NaN NaN 0 0 Median 12280000 6635400 5644300 0 0 0 0 0 0 0 0 0 744480 249290 495180 11535000 6386100 5149100 0 0 0 37831 3002 39750 200475;200476;200477 203695 203695 0 VTQPFILR ESQDYYHKVVIRLHRVTQPFILRRTKRDVE VVIRLHRVTQPFILRRTKRDVEKQLTKKYE R V T L R R 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 8 0 972.57565 Q96L91 Q96L91 1299 1306 EP400 E1A-binding protein p400 yes yes 2 0.0062263 72.138 By MS/MS 1 0.92888 0.97969 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92888 0.97969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11628000 6290300 5338100 0 0 0 0 0 0 11628000 6290300 5338100 0 0 0 0 0 0 0 0 0 37832 3700 39751 200478 203696 203696 1 VTQSAYAQIVQFGMNEK FFGRITTGAQDDLRKVTQSAYAQIVQFGMN QSAYAQIVQFGMNEKVGQISFDLPRQGDMV K V T E K V 2 0 1 0 0 3 1 1 0 1 0 1 1 1 0 1 1 0 1 2 0 0 17 0 1912.9353 Q9Y4W6 Q9Y4W6 653 669 AFG3L2 AFG3-like protein 2 yes yes 2 0.0033036 33.782 By MS/MS 1 0.9342 0.91494 NaN 1 Median 0.9342 0.91494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2441400 1382400 1059000 2441400 1382400 1059000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37833 4449 39752 200479 203697 203697 1 VTQSNFAVGYK WLAGYQMNFETAKSRVTQSNFAVGYKTDEF AKSRVTQSNFAVGYKTDEFQLHTNVNDGTE R V T Y K T 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 11 0 1212.6139 P21796;C9JI87 P21796 164 174 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.00011219 148.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 2 2 2 5 1.3189 1.1018 24.809 21 Median 1.0993 1.0075 20.034 4 1 Median 1.3244 1.1102 33.732 6 2 Median 1.2313 1.1804 6.2414 2 0 Median 1.2797 1.0616 5.257 2 0 Median 1.375 1.3888 4.4062 2 0 Median 1.372 1.0928 24.319 5 0 Median 918820000 409720000 509100000 612160000 281470000 330690000 151160000 61653000 89504000 26597000 11497000 15100000 37426000 15888000 21538000 25332000 10785000 14547000 66152000 28429000 37723000 37834 2092 39753 200480;200481;200482;200483;200484;200485;200486;200487;200488;200489;200490;200491;200492;200493;200494;200495;200496;200497;200498;200499;200500 203698;203699;203700;203701;203702;203703;203704;203705;203706;203707;203708;203709;203710;203711;203712;203713;203714;203715;203716;203717;203718;203719;203720;203721;203722;203723;203724;203725;203726;203727;203728;203729 203705 32 VTQVDGNSPVR SFVSKKNYCNIQVTKVTQVDGNSPVRFSTE QVTKVTQVDGNSPVRFSTETTFLVDKYEIL K V T V R F 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 1 1 0 0 3 0 0 11 0 1170.5993 B0YIW6;P48444 B0YIW6 527 537 ARCN1 Coatomer subunit delta yes no 2 0.00071474 64.04 By MS/MS 1 0.90396 0.90938 NaN 1 Median 0.90396 0.90938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2306300 1146100 1160200 2306300 1146100 1160200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37835 561 39754 200501 203730;203731 203730 2 VTQVEMASSHLR V T L R 1 1 0 0 0 1 1 0 1 0 1 0 1 0 0 2 1 0 0 2 0 0 12 0 1356.682 REV__A0A0E3D6N2 yes no 2 0.006853 44.309 By MS/MS 1 13.928 13.166 NaN 1 Median 13.928 13.166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49744000 2705600 47038000 49744000 2705600 47038000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 37836 4504 39755 200502 203732 203732 2001 1 VTSAHKGPDETLR IKKACGNFGIPCELRVTSAHKGPDETLRIK LRVTSAHKGPDETLRIKAEYEGDGIPTVFV R V T L R I 1 1 0 1 0 0 1 1 1 0 1 1 0 0 1 1 2 0 0 1 0 0 13 1 1409.7263 P22234;E9PBS1;D6RF62 P22234 299 311 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes no 3 0.041407 18.413 By MS/MS By matching 1 1 1.1319 1.0875 10.724 2 Median 0.9919 1.0081 NaN 1 0 Median 1.2918 1.1732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1292300 594540 697760 1032300 475990 556280 260040 118550 141490 0 0 0 0 0 0 0 0 0 0 0 0 37837 909 39756 200503;200504 203733 203733 1 VTSAVEALLSADSASR ARDGLGGLPDIVRDRVTSAVEALLSADSAS TSAVEALLSADSASRKQEVQAWDGEVRQVS R V T S R K 4 1 0 1 0 0 1 0 0 0 2 0 0 0 0 4 1 0 0 2 0 0 16 0 1575.8104 P45974 P45974 147 162 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2;3 3.5009E-10 113.77 By MS/MS By matching 3 2 1.1092 1.0477 7.929 5 Median 1.2238 1.18 9.7104 3 0 Plateau 1.1726 1.0224 6.6431 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16404000 7565100 8839200 13481000 6222400 7258900 2923000 1342700 1580400 0 0 0 0 0 0 0 0 0 0 0 0 37838 2332 39757 200505;200506;200507;200508;200509 203734;203735;203736;203737;203738;203739 203739 6 VTSAVVGPSHEVQEQSSGPFKK DQQHIETPGQNIPTKVTSAVVGPSHEVQEQ PSHEVQEQSSGPFKKQSATNLESEEDSEAP K V T K K Q 1 0 0 0 0 2 2 2 1 0 0 2 0 1 2 4 1 0 0 4 0 0 22 1 2297.1652 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 1087 1108 QSER1 Glutamine and serine-rich protein 1 yes no 3;4 0.00071196 26.627 By MS/MS 2 0.83332 0.96243 6.555 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83332 0.96243 6.555 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12006000 6326700 5679500 0 0 0 0 0 0 12006000 6326700 5679500 0 0 0 0 0 0 0 0 0 37839 418 39758 200510;200511 203740;203741 203740 1 VTSEELHYFVQNHFTSAR ALANPLYCPDYRIGKVTSEELHYFVQNHFT EELHYFVQNHFTSARMALIGLGVSHPVLKQ K V T A R M 1 1 1 0 0 1 2 0 2 0 1 0 0 2 0 2 2 0 1 2 0 0 18 0 2164.0338 P22695;H3BRG4;H3BSJ9 P22695 200 217 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 3 1.9903E-08 92.439 By MS/MS By MS/MS By MS/MS 2 2 1 1.1055 1.1468 11.71 5 Median 1.1844 1.1531 0.7697 2 0 Median NaN NaN NaN 0 0 Median 1.0986 1.1387 5.8421 2 1 Median 1.0244 0.88969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56291000 25286000 31005000 39793000 17503000 22290000 0 0 0 12396000 5858400 6537800 4102400 1925500 2177000 0 0 0 0 0 0 37840 2105 39759 200512;200513;200514;200515;200516 203742;203743;203744;203745 203743 3 VTSEGAGLQLQK IFLARNNTIVNELVRVTSEGAGLQLQKVTV LVRVTSEGAGLQLQKVTVLGVATAPQQVLS R V T Q K V 1 0 0 0 0 2 1 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1229.6616 P10253 P10253 892 903 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 2 0.0048376 62.463 By MS/MS By MS/MS 1 1 1.6598 1.504 68.009 2 Median 0.98358 0.92983 NaN 1 1 Median 2.801 2.4328 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5966000 2695200 3270800 4683700 2341500 2342200 1282200 353650 928580 0 0 0 0 0 0 0 0 0 0 0 0 37841 1935 39760 200517;200518 203746;203747 203747 2 VTSELLR ______________________________ ______________________________ K V T L R Q 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 816.47052 Q9NQW7;Q5T6H2;Q5T6H3;A0A2R8YCE9;A0A2R8Y4U7;E9PFW2;A0A2R8Y524;O00462 Q9NQW7 5 11 XPNPEP1;MANBA Xaa-Pro aminopeptidase 1;Beta-mannosidase yes no 2 0.014432 74.415 By matching By MS/MS 1 1 1.3391 1.255 0.56235 2 Median 1.2454 1.26 NaN 1 0 Median 1.4398 1.2501 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5296600 2378800 2917800 1937600 947310 990310 3359000 1431500 1927500 0 0 0 0 0 0 0 0 0 0 0 0 37842 4070 39761 200519;200520 203748 203748 1 VTSGVKPASFDK YPYSECQNAAQIYRRVTSGVKPASFDKVAI YRRVTSGVKPASFDKVAIPEVKEIIEGCIR R V T D K V 1 0 0 1 0 0 0 1 0 0 0 2 0 1 1 2 1 0 0 2 0 0 12 1 1234.6558 F5GWT4;Q9H4A3 F5GWT4 435 446 WNK1 Serine/threonine-protein kinase WNK1 yes no 3 0.041444 19.277 By matching By matching By MS/MS 1 1 1 0.16584 0.15813 46.742 3 Median 0.28733 0.29708 NaN 1 0 Median 0.16584 0.15813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.1336 0.11922 NaN 1 0 Median 14427000 12532000 1895000 1045900 685990 359900 7122900 6110700 1012200 0 0 0 0 0 0 0 0 0 6257800 5734900 522920 37843 1001 39762 200521;200522;200523 203749 203749 1 VTSSIPVFDLQDGGR AHGSQRTSGPESSMKVTSSIPVFDLQDGGR VTSSIPVFDLQDGGRKICPRCNAQFRVTEA K V T G R K 0 1 0 2 0 1 0 2 0 1 1 0 0 1 1 2 1 0 0 2 0 0 15 0 1589.8049 Q7Z3K3 Q7Z3K3 360 374 POGZ Pogo transposable element with ZNF domain yes yes 2 0.0032516 52.693 By MS/MS 1 0.60627 0.62217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60627 0.62217 NaN 1 1 Median NaN NaN NaN 0 0 Median 12455000 7175000 5279600 0 0 0 0 0 0 0 0 0 0 0 0 12455000 7175000 5279600 0 0 0 37844 3241 39763 200524 203750 203750 1 VTSSITIYPSDSSSPR TLEKQKPVSKPGPNKVTSSITIYPSDSSSP TSSITIYPSDSSSPRAAPGEALRERHTSTS K V T P R A 0 1 0 1 0 0 0 0 0 2 0 0 0 0 2 6 2 0 1 1 0 0 16 0 1695.8315 Q86V48 Q86V48 792 807 LUZP1 Leucine zipper protein 1 yes yes 2 0.00013347 54.143 By matching By MS/MS 1 1 0.66912 0.61294 22.366 2 Median 0.72873 0.71797 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61439 0.52328 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4109700 2485100 1624600 2236200 1250000 986250 0 0 0 0 0 0 1873500 1235100 638400 0 0 0 0 0 0 37845 3285 39764 200525;200526 203751;203752 203752 2 VTSVQIHGTSEER SLKDGLFHEFKKFGKVTSVQIHGTSEERYG GKVTSVQIHGTSEERYGLVFFRQQEDQEKA K V T E R Y 0 1 0 0 0 1 2 1 1 1 0 0 0 0 0 2 2 0 0 2 0 0 13 0 1441.7161 Q96T58;H0Y5U7;F6WRY4 Q96T58 365 377 SPEN Msx2-interacting protein yes no 2;3 8.5397E-06 92.19 By MS/MS By MS/MS By MS/MS 1 3 4 1.179 1.0553 14.541 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95287 1.0637 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2162 1.2717 6.0489 3 0 Median 1.176 0.99528 8.2658 4 0 Median 14479000 6399900 8079000 0 0 0 0 0 0 612450 324760 287690 0 0 0 8756500 3782400 4974100 5110000 2292800 2817200 37846 3741 39765 200527;200528;200529;200530;200531;200532;200533;200534 203753;203754;203755;203756;203757;203758;203759;203760;203761;203762;203763 203757 11 VTSVVFHPSQDLVFSASPDATIR SSEQILATLKGHTKKVTSVVFHPSQDLVFS SQDLVFSASPDATIRIWSVPNASCVQVVRA K V T I R I 2 1 0 2 0 1 0 0 1 1 1 0 0 2 2 4 2 0 0 4 0 0 23 0 2472.2649 Q9UMS4 Q9UMS4 267 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 5.1556E-29 113.24 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 4 3 1 1 0.73584 0.68944 47.324 12 Median 0.55762 0.54508 90.114 2 0 Median 0.25472 0.23989 NaN 1 0 Median 0.66338 0.68808 39.409 4 0 Median 0.92911 0.79497 14.712 3 0 Median 0.80511 0.80159 NaN 1 0 Median 0.80052 0.68618 NaN 1 0 Median 250160000 140940000 109220000 11705000 8077600 3627600 1509100 1127200 381860 202970000 113720000 89255000 13847000 7000000 6846800 19178000 10501000 8676900 952820 516740 436080 37847 4334 39766 200535;200536;200537;200538;200539;200540;200541;200542;200543;200544;200545;200546 203764;203765;203766;203767;203768;203769;203770;203771;203772;203773;203774;203775 203764 12 VTSVVVDVVPR HHQCSQLCLYDWYTKVTSVVVDVVPRQLGE WYTKVTSVVVDVVPRQLGENFSGIYCSLLP K V T P R Q 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 6 0 0 11 0 1168.6816 C9JIF9;P13798;H7C1U0 C9JIF9 340 350 APEH Acylamino-acid-releasing enzyme yes no 2 0.00035099 96.143 By MS/MS By MS/MS 2 1 0.96468 0.91267 101.25 3 Median 0.3977 0.39252 119.33 2 1 Median 1.1942 1.0348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23554000 13707000 9847000 19851000 11886000 7965200 3702600 1820700 1881900 0 0 0 0 0 0 0 0 0 0 0 0 37848 699 39767 200547;200548;200549 203776;203777 203776 2 VTTAAAAAATSQDPEQHLTELREPAPGTNQR QQIESEVANLKKTIKVTTAAAAAATSQDPE HLTELREPAPGTNQRQPSKKASKGKGLRGS K V T Q R Q 7 2 1 1 0 3 3 1 1 0 2 0 0 0 3 1 5 0 0 1 0 0 31 1 3230.5916 Q9UBW8 Q9UBW8 222 252 COPS7A COP9 signalosome complex subunit 7a yes yes 4 0.051134 9.5444 By MS/MS By matching By matching 1 1 2 0.68931 0.66088 19.419 4 Median 0.56279 0.60588 NaN 1 0 Median 0.84882 0.72087 NaN 1 0 Median 0.68292 0.71044 30.464 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19379000 11105000 8273700 9486000 5242600 4243400 1267900 761350 506560 8624900 5101200 3523700 0 0 0 0 0 0 0 0 0 37849 4253 39768 200550;200551;200552;200553 203778 203778 1 VTTEEFEAPMPSAVSGDDSQLTASR LSDALRTEENMEGTRVTTEEFEAPMPSAVS PSAVSGDDSQLTASRSEEKDECAMISTSIG R V T S R S 3 1 0 2 0 1 3 1 0 0 1 0 1 1 2 4 3 0 0 2 0 0 25 0 2624.1912 Q8NFC6 Q8NFC6 2110 2134 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 3 2.3513E-20 86.006 By MS/MS 2 0.65723 0.71225 1.5893 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65723 0.71225 1.5893 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12050000 6749100 5300600 0 0 0 0 0 0 12050000 6749100 5300600 0 0 0 0 0 0 0 0 0 37850 3434 39769 200554;200555 203779;203780;203781 203780 3 VTTEIQLPSQSPVEEQSPASLSSLR IPKEDSTTFAKREDRVTTEIQLPSQSPVEE SPVEEQSPASLSSLRSRSTQMESTRVSASL R V T L R S 1 1 0 0 0 3 3 0 0 1 3 0 0 0 3 6 2 0 0 2 0 0 25 0 2682.3712 E9PMP7;E9PMS6;H0Y424;A0A0A0MTE2;E9PMT2;F8WD26;J3KP06;Q8WWI1 E9PMP7 471 495 LMO7 LIM domain only protein 7 yes no 3 8.3274E-07 49.902 By MS/MS 1 0.77412 0.84803 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77412 0.84803 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2411800 1292000 1119800 0 0 0 0 0 0 2411800 1292000 1119800 0 0 0 0 0 0 0 0 0 37851 969 39770 200556 203782 203782 1 VTTFEHQYVSAIK NKANALLIREVDVEKVTTFEHQYVSAIKTL EKVTTFEHQYVSAIKTLWEDPGIQECYDRR K V T I K T 1 0 0 0 0 1 1 0 1 1 0 1 0 1 0 1 2 0 1 2 0 0 13 0 1521.7827 P29992 P29992 121 133 GNA11 Guanine nucleotide-binding protein subunit alpha-11 yes yes 3 0.0011588 41.227 By MS/MS By matching 1 1 1.0811 1.0121 3.7682 2 Median 1.0679 0.98553 NaN 1 0 Median 1.0945 1.0395 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22090000 10365000 11725000 20907000 9829900 11077000 1183600 535240 648310 0 0 0 0 0 0 0 0 0 0 0 0 37852 2176 39771 200557;200558 203783;203784 203784 2 VTTLDNGLR PVFATVDGQEKFETKVTTLDNGLRVASQNK EKFETKVTTLDNGLRVASQNKFGQFCTVGI K V T L R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 9 0 987.53491 Q10713 Q10713 69 77 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.00085609 94.114 By MS/MS By MS/MS 2 1 2.3163 2.1016 47.657 3 Plateau 1.8938 1.8103 65.984 2 0 Median 1.808 1.5301 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12771000 3903600 8867000 7053000 1920100 5132900 5717600 1983500 3734100 0 0 0 0 0 0 0 0 0 0 0 0 37853 2754 39772 200559;200560;200561 203785;203786;203787 203786 3 VTTLGGFAK AVGGKELDLHGLYTRVTTLGGFAKVSEKNQ HGLYTRVTTLGGFAKVSEKNQWGEIVEEFN R V T A K V 1 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 2 0 0 1 0 0 9 0 892.50182 Q68CP9;F8WCU9 Q68CP9 54 62 ARID2 AT-rich interactive domain-containing protein 2 yes no 2 0.017475 57.047 By MS/MS 2 0.94342 1.0456 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94342 1.0456 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8206000 4200400 4005500 0 0 0 0 0 0 8206000 4200400 4005500 0 0 0 0 0 0 0 0 0 37854 3122 39773 200562;200563 203788;203789 203788 2 VTTLPGHIQAVYVQNVVK LQEPHHTLEAMLRPRVTTLPGHIQAVYVQN LPGHIQAVYVQNVVKLYASILQQKEQAGEA R V T V K L 1 0 1 0 0 2 0 1 1 1 1 1 0 0 1 0 2 0 1 5 0 0 18 0 1965.1047 O14617;A0A2R8Y611 O14617 511 528 AP3D1 AP-3 complex subunit delta-1 yes no 3 2.243E-06 57.499 By MS/MS By matching By MS/MS By matching 3 4 1 2 1.0106 0.90272 25.303 10 Median 0.94251 0.94524 4.5706 3 0 Plateau 1.0142 0.88934 4.5512 4 0 Median 1.8437 1.9991 NaN 1 0 Median 1.0899 0.93179 9.3337 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36210000 17779000 18431000 26776000 13731000 13045000 4491200 2133800 2357400 4267800 1630800 2637100 674470 282670 391800 0 0 0 0 0 0 37855 1485 39774 200564;200565;200566;200567;200568;200569;200570;200571;200572;200573 203790;203791;203792;203793;203794 203790 5 VTTLTTHAGIR EDFRSIMTDIKKDNRVTTLTTHAGIRNSLL KDNRVTTLTTHAGIRNSLLTILDQLQRCQK R V T I R N 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 4 0 0 1 0 0 11 0 1168.6564 Q8NCM8 Q8NCM8 1388 1398 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.0068249 62.823 By MS/MS 2 0.93082 0.93931 6.7761 2 Median 0.93082 0.93931 6.7761 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3536800 1655700 1881100 3536800 1655700 1881100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37856 3418 39775 200574;200575 203795;203796 203796 2 VTTMDAELEFAIQPNTTGK ______________________________ DAELEFAIQPNTTGKQLFDQVVKTIGLREV R V T G K Q 2 0 1 1 0 1 2 1 0 1 1 1 1 1 1 0 4 0 0 1 0 0 19 0 2065.0038 P26038;E9PNP4;P15311;E7EQR4;P35241;A0A2R8Y5S7;A0A2R8Y7M3 P26038 9 27 MSN;RDX;EZR Moesin;Ezrin;Radixin no no 2;3 8.4927E-18 111.39 By MS/MS By matching By MS/MS By matching 3 2 3 3 0.95137 0.87951 13.673 11 Median 0.91366 0.83269 6.9506 3 0 Median 1.1222 1.0053 29.24 2 0 Median 0.95208 0.96548 4.8228 3 0 Median 0.97413 0.84477 7.0499 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51629000 25469000 26160000 16611000 8385700 8225000 649990 278350 371640 30035000 14716000 15319000 4333200 2088600 2244600 0 0 0 0 0 0 37857 2139;879;2235 39776;39777 200576;200577;200578;200579;200580;200581;200582;200583;200584;200585;200586 203797;203798;203799;203800;203801;203802;203803 203798 319 7 VTTPQEGYISR KMCFETLLQFSFSNKVTTPQEGYISRMALS FSNKVTTPQEGYISRMALSVLLKRSQDVLH K V T S R M 0 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 2 0 1 1 0 0 11 0 1249.6303 A0A286YFF8;Q7Z3U7 A0A286YFF8 1596 1606 MON2 Protein MON2 homolog yes no 2 0.018165 54.539 By MS/MS 1 0.84315 0.7106 NaN 1 Median NaN NaN NaN 0 0 Median 0.84315 0.7106 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2147500 981340 1166200 0 0 0 2147500 981340 1166200 0 0 0 0 0 0 0 0 0 0 0 0 37858 353 39778 200587 203804 203804 1 VTTQTSLPLFR PEKIGDGMNAYVAYKVTTQTSLPLFRSKQF VAYKVTTQTSLPLFRSKQFAVKRRFSDFLG K V T F R S 0 1 0 0 0 1 0 0 0 0 2 0 0 1 1 1 3 0 0 1 0 0 11 0 1261.703 Q13596;H0YK43 Q13596 167 177 SNX1 Sorting nexin-1 yes no 2 0.00054228 67.563 By MS/MS By matching 1 1 0.89557 0.81561 7.6817 2 Median 0.8042 0.77249 NaN 1 0 Median 0.99731 0.86114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8785100 4514300 4270800 7160100 3627800 3532300 1625100 886530 738540 0 0 0 0 0 0 0 0 0 0 0 0 37859 2829 39779 200588;200589 203805 203805 1 VTTSLEALPTGTVLTDK PQKTRQSPQTLKRSRVTTSLEALPTGTVLT TSLEALPTGTVLTDKSGRQWKLKSFQTRDN R V T D K S 1 0 0 1 0 0 1 1 0 0 3 1 0 0 1 1 5 0 0 2 0 0 17 0 1744.9458 M0R073;M0QYA8;Q8IV63;M0QXV1;M0QXD7;M0QX88;M0R025;M0R200;M0QYG0 M0R073 95 111 VRK3 Inactive serine/threonine-protein kinase VRK3 yes no 2 3.1963E-05 52.071 By matching By matching By MS/MS By matching 1 2 1 1 0.80202 0.70582 12.973 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6748 0.69359 NaN 1 0 Median 0.89963 0.786 15.216 2 0 Median 0.73805 0.70327 NaN 1 0 Median 1.0441 0.89955 NaN 1 0 Median 7623300 4520800 3102500 0 0 0 0 0 0 2878200 1663400 1214800 305090 179030 126060 4338900 2635800 1703100 101090 42587 58502 37860 1415 39780 200590;200591;200592;200593;200594 203806 203806 1 VTTTVHNIIVGK HCIFHATGHHYTWKKVTTTVHNIIVGKLWI WKKVTTTVHNIIVGKLWIDQSGEIDIVNHK K V T G K L 0 0 1 0 0 0 0 1 1 2 0 1 0 0 0 0 3 0 0 3 0 0 12 0 1280.7452 P22059 P22059 578 589 OSBP Oxysterol-binding protein 1 yes yes 2;3 0.0010999 44.543 By MS/MS By MS/MS 3 2 1.1934 1.0886 7.2129 5 Median 1.0544 1.0385 9.6526 3 0 Median 1.2538 1.1137 3.2175 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9819400 4334600 5484800 6620000 2861500 3758500 3199500 1473100 1726400 0 0 0 0 0 0 0 0 0 0 0 0 37861 2096 39781 200595;200596;200597;200598;200599 203807;203808;203809;203810;203811;203812;203813 203812 7 VTTVTEIGK SGACYSPEFKGQICRVTTVTEIGKDVIGLR KGQICRVTTVTEIGKDVIGLRISPLQFR__ R V T G K D 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 3 0 0 2 0 0 9 0 946.53351 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1203 1211 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.0032081 66.692 By MS/MS 1 1.2976 1.1033 NaN 1 Median NaN NaN NaN 0 0 Median 1.2976 1.1033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5894200 2634800 3259400 0 0 0 5894200 2634800 3259400 0 0 0 0 0 0 0 0 0 0 0 0 37862 2473 39782 200600 203814 203814 1 VTTVTEIGKDVIGLR SGACYSPEFKGQICRVTTVTEIGKDVIGLR VTTVTEIGKDVIGLRISPLQFR________ R V T L R I 0 1 0 1 0 0 1 2 0 2 1 1 0 0 0 0 3 0 0 3 0 0 15 1 1599.9196 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3ITI7 P53621 1203 1217 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2;3 4.9593E-09 108.35 By MS/MS By matching By MS/MS By matching By matching 6 2 2 1 1 1.114 1.1597 24.157 12 Median 1.114 1.1597 6.4017 6 4 Median 1.1666 1.1275 9.4919 2 0 Median 1.4889 1.6909 4.7529 2 0 Median 0.71123 0.6835 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0541 0.93893 NaN 1 0 Median 77706000 34934000 42772000 69599000 31588000 38011000 1808700 791340 1017300 6033900 2426600 3607300 157200 70876 86328 0 0 0 106720 56652 50070 37863 2473 39783 200601;200602;200603;200604;200605;200606;200607;200608;200609;200610;200611;200612 203815;203816;203817;203818;203819;203820;203821;203822 203817 8 VTTVVATLGQGPER ______________________________ KVTTVVATLGQGPERSQEVAYTDIKVIGNG K V T E R S 1 1 0 0 0 1 1 2 0 0 1 0 0 0 1 0 3 0 0 3 0 0 14 0 1426.778 M0QYV0;A8MT37;P49840 M0QYV0 13 26 GSK3A Glycogen synthase kinase-3 alpha yes no 2 2.4602E-11 177.57 By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 0.74578 0.65499 17.753 6 Median 0.66246 0.63839 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6824 0.6905 35.772 2 0 Median 0.83232 0.72002 9.7553 2 1 Median NaN NaN NaN 0 0 Median 0.7117 0.61801 NaN 1 0 Median 29368000 15988000 13381000 8529000 5200000 3329000 0 0 0 16098000 8242400 7855400 4254600 2256600 1998000 0 0 0 486850 288680 198170 37864 541 39784 200613;200614;200615;200616;200617;200618 203823;203824;203825;203826 203823 4 VTTVVATPGQGPDRPQEVSYTDTK AFGSMKVSRDKDGSKVTTVVATPGQGPDRP QGPDRPQEVSYTDTKVIGNGSFGVVYQAKL K V T T K V 1 1 0 2 0 2 1 2 0 0 0 1 0 0 3 1 5 0 1 4 0 0 24 1 2545.266 P49841;A0A3B3ITW1 P49841 37 60 GSK3B Glycogen synthase kinase-3 beta yes no 3 2.0453E-29 116.35 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 1 0.70466 0.66877 12.015 6 Median 0.6313 0.62967 NaN 1 0 Median 0.78655 0.71903 NaN 1 0 Median 0.56204 0.60444 3.7893 2 0 Median 0.85318 0.81378 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.79438 0.7103 NaN 1 0 Median 78731000 46064000 32667000 8579400 4619400 3960000 1167400 632660 534710 43682000 27555000 16127000 24415000 12848000 11566000 0 0 0 887570 408740 478830 37865 2402 39785 200619;200620;200621;200622;200623;200624 203827;203828;203829;203830;203831;203832;203833 203832 7 VTVAGGVHISGLHTESAPR DKAQVADVVVSRWLRVTVAGGVHISGLHTE GGVHISGLHTESAPRRQQEQQVPILEKFCF R V T P R R 2 1 0 0 0 0 1 3 2 1 1 0 0 0 1 2 2 0 0 3 0 0 19 0 1886.9963 P49327;A0A0U1RQF0 P49327 1086 1104 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3;4 1.3746E-124 234.9 By MS/MS By MS/MS By matching By matching 7 8 2 2 1.0472 0.98026 13.165 19 Median 0.91228 0.889 6.5756 7 1 Median 1.1999 0.99984 10.091 8 0 Median 0.93105 1.0226 10.977 2 0 Median 1.3896 1.2276 13.407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 507880000 243760000 264120000 242940000 125080000 117860000 250200000 111560000 138640000 12953000 6318300 6634800 1784300 805490 978770 0 0 0 0 0 0 37866 2377 39786 200625;200626;200627;200628;200629;200630;200631;200632;200633;200634;200635;200636;200637;200638;200639;200640;200641;200642;200643 203834;203835;203836;203837;203838;203839;203840;203841;203842;203843;203844;203845;203846;203847;203848;203849;203850;203851;203852;203853;203854;203855;203856;203857;203858;203859;203860;203861;203862;203863;203864;203865;203866;203867;203868;203869 203847 36 VTVAGLAGK ETVIPVDVMRRAGIKVTVAGLAGKDPVQCS RRAGIKVTVAGLAGKDPVQCSRDVVICPDA K V T G K D 2 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 814.49125 Q99497;K7ELW0 Q99497 33 41 PARK7 Protein deglycase DJ-1 yes no 2 0.0020175 75.109 By MS/MS By MS/MS By MS/MS 3 2 1 0.9791 0.89964 33.866 6 Median 1.1733 0.77554 23.022 3 0 Plateau 1.5805 1.3512 36.532 2 1 Median 0.81576 0.76873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30640000 14039000 16600000 20194000 8872300 11322000 4659000 1822500 2836500 5786600 3344600 2442000 0 0 0 0 0 0 0 0 0 37867 3749 39787 200644;200645;200646;200647;200648;200649 203870;203871;203872;203873;203874;203875;203876 203873 7 VTVAGLAGKDPVQCSR ETVIPVDVMRRAGIKVTVAGLAGKDPVQCS TVAGLAGKDPVQCSRDVVICPDASLEDAKK K V T S R D 2 1 0 1 1 1 0 2 0 0 1 1 0 0 1 1 1 0 0 3 0 0 16 1 1656.8617 Q99497;K7ELW0 Q99497 33 48 PARK7 Protein deglycase DJ-1 yes no 2;3 1.686E-13 120.87 By MS/MS By MS/MS 2 4 1.1253 1.0607 9.3445 6 Median 0.9573 0.99763 12.883 2 0 Median 1.2158 1.0923 7.6309 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157180000 69818000 87360000 51063000 23932000 27131000 106110000 45886000 60229000 0 0 0 0 0 0 0 0 0 0 0 0 37868 3749 39788 200650;200651;200652;200653;200654;200655 203877;203878;203879;203880;203881;203882;203883;203884;203885 203883 9 VTVDDLPNR VAYDPEDETILEEAKVTVDDLPNRMCADVR ILEEAKVTVDDLPNRMCADVRRNSVERPAE K V T N R M 0 1 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 9 0 1027.5298 Q9BTC0 Q9BTC0 1439 1447 DIDO1 Death-inducer obliterator 1 yes yes 2 1.468E-06 130.27 By MS/MS By MS/MS 2 1 0.87312 0.95162 34.83 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75623 0.82579 20.057 2 2 Median 1.631 1.4327 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21645000 10243000 11402000 0 0 0 0 0 0 19146000 9542700 9603600 2498500 700590 1797900 0 0 0 0 0 0 37869 3824 39789 200656;200657;200658 203886;203887;203888 203887 3 VTVDQVTDR YKDSLPPSPLLFPGKVTVDQVTDRLVIADT LLFPGKVTVDQVTDRLVIADTGHHRILVVW K V T D R L 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 9 0 1031.5247 Q8NBF2 Q8NBF2 229 237 NHLRC2 NHL repeat-containing protein 2 yes yes 2 0.0037182 80.438 By MS/MS By MS/MS 1 1 0.18288 0.16539 17.442 2 Median 0.1978 0.1871 NaN 1 1 Median 0.16909 0.1462 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35502000 32590000 2912500 18379000 16751000 1628200 17123000 15839000 1284300 0 0 0 0 0 0 0 0 0 0 0 0 37870 3402 39790 200659;200660 203889;203890 203889 2 VTVDTGVIPASEEK KESQRKFEEETVKSKVTVDTGVIPASEEKA KVTVDTGVIPASEEKAETPTAAEDDNEGDK K V T E K A 1 0 0 1 0 0 2 1 0 1 0 1 0 0 1 1 2 0 0 3 0 0 14 0 1443.7457 A0A087WUT6;O60841 A0A087WUT6 285 298 EIF5B Eukaryotic translation initiation factor 5B yes no 2 4.0343E-19 121.02 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 1 0.92313 0.79107 12.416 7 Median 1.0479 1.0133 NaN 1 0 Median 1.0094 0.86065 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87968 0.76837 9.8626 4 2 Median NaN NaN NaN 0 0 Median 0.92313 0.79107 NaN 1 1 Median 53319000 26033000 27286000 11543000 4340000 7202800 5380000 2675600 2704400 0 0 0 34429000 18012000 16417000 0 0 0 1967100 1005100 961960 37871 35 39791 200661;200662;200663;200664;200665;200666;200667;200668 203891;203892;203893;203894;203895;203896;203897;203898;203899;203900;203901 203892 11 VTVDTGVIPASEEKAETPTAAEDDNEGDKK KESQRKFEEETVKSKVTVDTGVIPASEEKA ETPTAAEDDNEGDKKKKDKKKKKGEKEEKE K V T K K K 4 0 1 4 0 0 5 2 0 1 0 3 0 0 2 1 4 0 0 3 0 0 30 2 3115.4681 A0A087WUT6;O60841 A0A087WUT6 285 314 EIF5B Eukaryotic translation initiation factor 5B yes no 4 1.0445E-05 35.923 By MS/MS 2 0.74658 0.7606 2.8344 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74658 0.7606 2.8344 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10052000 5083400 4968800 0 0 0 0 0 0 0 0 0 10052000 5083400 4968800 0 0 0 0 0 0 37872 35 39792 200669;200670 203902;203903 203903 2 VTVFDLK FTCDGNSVISPVGNRVTVFDLKNNKSDTLP VISPVGNRVTVFDLKNNKSDTLPLATRYNV R V T L K N 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 7 0 820.46945 Q15269;A0A0B4J2E5;C9J544 Q15269 37 43 PWP2 Periodic tryptophan protein 2 homolog yes no 2 0.01522 72.138 By MS/MS By matching By matching 2 1 1 1.3501 1.3663 9.5829 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2954 1.3803 0.81995 2 1 Median 1.532 1.3603 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3935 1.1348 NaN 1 0 Median 11938000 5120700 6817000 0 0 0 0 0 0 11593000 4969800 6623200 220020 100490 119530 0 0 0 124670 50445 74226 37873 223 39793 200671;200672;200673;200674 203904;203905;203906 203905 3 VTVGVDGTLYK VVDRIRENRGLDALKVTVGVDGTLYKLHPH DALKVTVGVDGTLYKLHPHFAKVMHETVKD K V T Y K L 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 0 2 0 1 3 0 0 11 0 1150.6234 E9PB90;P52789 E9PB90 828 838 HK2 Hexokinase;Hexokinase-2 yes no 2 0.0013629 82.749 By MS/MS By matching 1 1 1.3232 1.2297 25.432 2 Median 1.511 1.472 NaN 1 0 Median 1.1587 1.0273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7372100 2936600 4435500 5613700 2191400 3422300 1758400 745150 1013200 0 0 0 0 0 0 0 0 0 0 0 0 37874 908 39794 200675;200676 203907 203907 0 VTVIPFYMGMR LELSDVHRETTENIRVTVIPFYMGMREAQN ENIRVTVIPFYMGMREAQNSHVYWWRYCIR R V T M R E 0 1 0 0 0 0 0 1 0 1 0 0 2 1 1 0 1 0 1 2 0 0 11 0 1312.6672 Q9Y2S7;B4DEM9 Q9Y2S7 243 253 POLDIP2 Polymerase delta-interacting protein 2 yes no 2 0.003026 50.607 By MS/MS By matching 1 1 1.1364 1.1061 4.8797 2 Median 1.078 1.0685 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.198 1.1449 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6474900 2933000 3541800 5387500 2538700 2848800 0 0 0 1087300 394330 693010 0 0 0 0 0 0 0 0 0 37875 4390 39795 200677;200678 203908 203908 1 VTVLFAGQHIAK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF THKVTVLFAGQHIAKSPFEVYVDKSQGDAS K V T A K S 2 0 0 0 0 1 0 1 1 1 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1282.7398 P21333;F8WE98;Q60FE5;A0A087WWY3 P21333 356 367 FLNA Filamin-A no no 2;3 5.9754E-06 142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 6 6 3 5 3 1 1.2429 1.1852 25.054 24 Median 1.2513 1.242 6.7128 6 0 Median 1.0504 0.93317 8.8277 6 0 Median 1.2978 1.4314 41.52 3 0 Median 1.0959 1.0377 12.841 5 0 Median 1.5481 1.6005 8.1147 3 0 Median 1.364 1.1787 NaN 1 0 Median 803890000 368990000 434900000 348140000 154420000 193710000 386920000 184540000 202380000 40699000 18306000 22393000 10745000 5284600 5460800 17093000 6285400 10807000 290970 148130 142840 37876 2088;3120 39796 200679;200680;200681;200682;200683;200684;200685;200686;200687;200688;200689;200690;200691;200692;200693;200694;200695;200696;200697;200698;200699;200700;200701;200702 203909;203910;203911;203912;203913;203914;203915;203916;203917;203918;203919;203920;203921;203922;203923;203924;203925;203926;203927;203928;203929;203930;203931;203932;203933;203934;203935;203936 203929 28 VTVLFAGQHISK TYSVEYLPKVTGLHKVTVLFAGQHISKSPF LHKVTVLFAGQHISKSPFEVSVDKAQGDAS K V T S K S 1 0 0 0 0 1 0 1 1 1 1 1 0 1 0 1 1 0 0 2 0 0 12 0 1298.7347 O75369;E7EN95 O75369 329 340 FLNB Filamin-B yes no 2;3 0.00012009 90.108 By MS/MS By MS/MS By MS/MS By MS/MS 5 2 3 3 1.2174 1.1813 21.514 13 Median 0.86182 0.86919 23.309 5 1 Median 1.3315 1.1857 11.83 2 1 Median 1.0526 1.169 15.164 3 0 Median 1.5075 1.408 7.0113 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 163790000 74694000 89098000 81428000 36753000 44675000 67456000 30894000 36562000 12304000 5867400 6436600 2604000 1179700 1424200 0 0 0 0 0 0 37877 1664 39797 200703;200704;200705;200706;200707;200708;200709;200710;200711;200712;200713;200714;200715 203937;203938;203939;203940;203941;203942;203943;203944;203945;203946;203947;203948;203949;203950;203951 203941 15 VTVLFAGQNIER TYAVSYVPKVAGLHKVTVLFAGQNIERSPF LHKVTVLFAGQNIERSPFEVNVGMALGDAN K V T E R S 1 1 1 0 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 12 0 1345.7354 Q14315 Q14315 350 361 FLNC Filamin-C yes yes 2 1.4397E-21 196.27 By MS/MS By MS/MS By MS/MS 2 2 2 1.2745 1.1522 16.184 4 Median 1.323 1.2631 8.0518 2 0 Median 1.2229 1.006 14.249 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53846000 23454000 30392000 37385000 16018000 21367000 16461000 7436500 9024800 0 0 0 0 0 0 0 0 0 0 0 0 37878 2871 39798 200716;200717;200718;200719;200720;200721 203952;203953;203954;203955;203956;203957;203958;203959 203953 8 VTVLGHVQR YVKDLVVQRLGFDTRVTVLGHVQRGGTPSA LGFDTRVTVLGHVQRGGTPSAFDRILSSKM R V T Q R G 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 9 0 1007.5876 A0A2R8Y891;P08237;P17858 P17858 293 301 PFKM;PFKL ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, liver type no no 2 0.00034235 136.11 By MS/MS By MS/MS 2 3 1.2881 1.2598 10.661 5 Median 1.1938 1.1663 15.259 2 0 Median 1.486 1.2847 10.31 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27135000 11758000 15378000 10036000 4631600 5404000 17100000 7126200 9973700 0 0 0 0 0 0 0 0 0 0 0 0 37879 2047;390 39799 200722;200723;200724;200725;200726 203960;203961;203962;203963;203964 203963 5 VTVLTLQDK CASKPEVTVRLNVHKVTVLTLQDKIVKEKF RLNVHKVTVLTLQDKIVKEKFAMVAPDVQI K V T D K I 0 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 2 0 0 2 0 0 9 0 1015.5914 Q9UBT2 Q9UBT2 459 467 UBA2 SUMO-activating enzyme subunit 2 yes yes 2 0.00055412 114.89 By MS/MS By MS/MS By matching 3 2 1 1.2335 1.0585 28.238 6 Median 1.4289 1.3769 34.83 3 0 Median 1.2335 1.0585 8.4673 2 0 Median 0.76836 0.8165 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38319000 18909000 19411000 24855000 12349000 12506000 10787000 5094200 5693300 2676500 1465700 1210800 0 0 0 0 0 0 0 0 0 37880 4247 39800 200727;200728;200729;200730;200731;200732 203965;203966;203967;203968 203965 4 VTVLVMCHTR ______________________________ ______________________________ - V T T R E 0 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 0 0 3 0 0 10 0 1214.6264 A0A0D9SEM9 A0A0D9SEM9 1 10 DDX39A yes yes 2 0.00072958 67.032 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0824 0.94735 7.521 4 Median 1.0184 0.96909 NaN 1 0 Median 1.083 0.91135 12.016 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1505 0.9261 NaN 1 0 Median 108990000 52793000 56198000 71287000 35542000 35745000 32447000 14867000 17580000 0 0 0 0 0 0 0 0 0 5256700 2384700 2872000 37881 260 39801 200733;200734;200735;200736;200737 203969;203970;203971;203972;203973;203974 203969 113 6 VTVMASLR PLPEYHVRIAGFDERVTVMASLRRPKRIII IAGFDERVTVMASLRRPKRIIIRGHDEREH R V T L R R 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 0 0 8 0 875.48987 P78527 P78527 3726 3733 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.0171E-21 197.65 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 4 10 5 5 1.3645 1.1866 26.265 32 Median 1.0305 1.0217 24.395 6 0 Median 1.4471 1.1556 60.94 5 2 Median 1.024 1.0915 13.378 4 0 Median 1.5043 1.3108 15.001 7 3 Median 1.1512 1.1733 8.2911 5 1 Median 1.5091 1.2501 4.388 5 1 Median 360810000 163980000 196830000 85620000 42289000 43331000 95801000 40457000 55344000 99609000 48633000 50977000 25930000 10309000 15621000 31480000 13828000 17652000 22367000 8461000 13905000 37882 2647 39802;39803 200738;200739;200740;200741;200742;200743;200744;200745;200746;200747;200748;200749;200750;200751;200752;200753;200754;200755;200756;200757;200758;200759;200760;200761;200762;200763;200764;200765;200766;200767;200768;200769;200770;200771;200772 203975;203976;203977;203978;203979;203980;203981;203982;203983;203984;203985;203986;203987;203988;203989;203990;203991;203992;203993;203994;203995;203996;203997;203998;203999;204000;204001;204002;204003;204004;204005;204006;204007;204008;204009;204010;204011;204012;204013;204014;204015;204016 204001 1339 42 VTVNTNMVDLNDYLQHILK AEFRQMWAEFEWENKVTVNTNMVDLNDYLQ TNMVDLNDYLQHILKSTNMKCLTPEKALSG K V T L K S 0 0 3 2 0 1 0 0 1 1 3 1 1 0 0 0 2 0 1 3 0 0 19 0 2229.1464 P53618 P53618 853 871 COPB1 Coatomer subunit beta yes yes 3 4.2754E-07 59.434 By matching By MS/MS By matching By matching 1 2 1 3 0.74163 0.69682 25.919 7 Median 1.013 1.0208 NaN 1 0 Median 0.88665 0.77427 27.414 2 0 Median 0.62457 0.69682 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74163 0.60488 31.059 3 0 Median 18239000 8711600 9527700 1401700 703520 698180 15829000 7480800 8347900 309030 193210 115820 0 0 0 0 0 0 699950 334160 365790 37883 2472 39804;39805 200773;200774;200775;200776;200777;200778;200779 204017;204018 204017 1162 2 VTVVDVNESR GPTCSVIAHMCPEIRVTVVDVNESRINAWN CPEIRVTVVDVNESRINAWNSPTLPIYEPG R V T S R I 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 4 0 0 10 0 1116.5775 O60701;E7ER95;E7ER83;E7ETF4;E7EV97;D6RHF4;E9PBD2 O60701 32 41 UGDH UDP-glucose 6-dehydrogenase yes no 2 0.00069441 84.213 By MS/MS By MS/MS 1 1 0.67492 0.65557 NaN 1 Median 0.67492 0.65557 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6674000 3960300 2713700 6674000 3960300 2713700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37884 1627 39806 200780;200781 204019;204020 204020 2 VTWDGHSGSMAR GKKIGEEEIQKPEEKVTWDGHSGSMARTQQ EEKVTWDGHSGSMARTQQAAQANITLQEQI K V T A R T 1 1 0 1 0 0 0 2 1 0 0 0 1 0 0 2 1 1 0 1 0 0 12 0 1302.5775 Q15459 Q15459 500 511 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 0.00016247 71.085 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 2 3 5 4 1.2021 1.0975 17.818 18 Median 1.0307 1.036 NaN 1 1 Median 1.3404 1.1303 10.508 3 0 Median 1.3306 1.4185 22.174 2 1 Median 1.2304 1.0442 23.551 3 0 Median 1.1289 1.1743 18.405 5 1 Median 1.2608 1.0477 6.2592 4 0 Median 57039000 25665000 31374000 1208800 544480 664270 10435000 4890100 5544500 9979600 4520600 5459100 7636100 3387900 4248200 23549000 10531000 13018000 4230900 1790800 2440100 37885 2954 39807 200782;200783;200784;200785;200786;200787;200788;200789;200790;200791;200792;200793;200794;200795;200796;200797;200798;200799 204021;204022;204023;204024;204025;204026;204027;204028;204029;204030;204031;204032;204033;204034;204035;204036;204037;204038;204039;204040 204023 20 VTWSSGSTEAIYR QKRRVPNKHYVYIIRVTWSSGSTEAIYRRY IRVTWSSGSTEAIYRRYSKFFDLQMQMLDK R V T Y R R 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 3 2 1 1 1 0 0 13 0 1455.6994 A1X283;G3V144;A0A1B0GUF2 A1X283 31 43 SH3PXD2B SH3 and PX domain-containing protein 2B yes no 2 0.004637 39.917 By matching By MS/MS By MS/MS By matching 1 2 1 4 1.0306 0.84507 31.567 8 Median 1.4859 1.488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.323 1.1347 24.009 2 0 Median 1.2638 1.2581 NaN 1 0 Median 0.90718 0.72544 3.052 4 0 Median 35772000 13514000 22257000 10756000 2995800 7759900 0 0 0 0 0 0 2934800 1173200 1761600 20477000 8441800 12035000 1604000 903610 700370 37886 494 39808 200800;200801;200802;200803;200804;200805;200806;200807 204041;204042 204042 2 VTYHPDGPEGQAYDVDFTPPFR KMVSGMVKHITGSYKVTYHPDGPEGQAYDV PEGQAYDVDFTPPFRRINMVEELEKALGMK K V T F R R 1 1 0 3 0 1 1 2 1 0 0 0 0 2 4 0 2 0 2 2 0 0 22 0 2507.1394 Q15046 Q15046 371 392 KARS Lysine--tRNA ligase yes yes 3 1.3284E-10 62.19 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.60224 0.53572 6.5639 5 Median 0.56043 0.53668 10.756 2 0 Median 0.64727 0.56273 NaN 1 0 Median 0.50986 0.53572 NaN 1 0 Median 0.60224 0.50606 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20900000 12822000 8077600 14726000 9112300 5613500 926640 528220 398420 4586700 2781800 1805000 660310 399630 260680 0 0 0 0 0 0 37887 2919 39809 200808;200809;200810;200811;200812 204043;204044;204045;204046;204047;204048 204047 6 VTYIDYEGR TKCISTTESIEIKARVTYIDYEGRSDGDSI IEIKARVTYIDYEGRSDGDSIKKIINQMKP R V T G R S 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 2 1 0 0 9 0 1114.5295 Q9P2I0;H0YJF4 Q9P2I0 535 543 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes no 2 0.0049967 72.23 By MS/MS By MS/MS 2 1 0.82762 0.87671 8.3146 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82522 0.87418 0.40988 2 2 Median 1.1714 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41523000 21154000 20369000 0 0 0 0 0 0 37852000 19574000 18279000 3670400 1579700 2090700 0 0 0 0 0 0 37888 4223 39810 200813;200814;200815 204049;204050;204051;204052 204051 4 VTYMEASAK QVTQEEGQQLARQLKVTYMEASAKIRMNVD LARQLKVTYMEASAKIRMNVDQAFHELVRV K V T A K I 2 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 1 0 1 1 0 0 9 0 998.47428 P62070;E9PK85 P62070 151 159 RRAS2 Ras-related protein R-Ras2 yes no 2 0.032216 48.283 By MS/MS 1 0.63976 0.62063 NaN 1 Median 0.63976 0.62063 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1131800 711190 420620 1131800 711190 420620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37889 2567 39811 200816 204053 204053 1 VTYMEEER AYDIVQLPTGLTGIKVTYMEEERNFTTEQV TGLTGIKVTYMEEERNFTTEQVTAMLLSKL K V T E R N 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 8 0 1055.4594 P34932;A0A087WYC1;A0A087WTS8 P34932 103 110 HSPA4 Heat shock 70 kDa protein 4 yes no 2 0.0023123 109.86 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1.1644 1.0769 22.665 7 Median 1.2916 1.2745 23.822 2 0 Median 1.1644 0.9619 18.01 3 0 Median 1.3539 1.4445 NaN 1 0 Median 1.0364 0.88575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50997000 23047000 27951000 4759600 2383600 2376000 44416000 19789000 24627000 1052200 404100 648080 769330 470290 299040 0 0 0 0 0 0 37890 2230 39812;39813 200817;200818;200819;200820;200821;200822;200823 204054;204055;204056;204057;204058;204059;204060 204057 971 7 VTYTPMAPGSYLISIK SKVKMDCQECPEGYRVTYTPMAPGSYLISI TYTPMAPGSYLISIKYGGPYHIGGSPFKAK R V T I K Y 1 0 0 0 0 0 0 1 0 2 1 1 1 0 2 2 2 0 2 1 0 0 16 0 1739.9168 P21333;Q60FE5;A0A087WWY3 P21333 2485 2500 FLNA Filamin-A no no 2;3 3.6277E-05 81.565 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 3 1 2 0.85768 0.83727 18.722 16 Median 0.87661 0.8646 8.6921 5 0 Median 0.72924 0.62837 12.881 5 0 Median 0.77475 0.85344 2.1263 3 0 Median 0.76714 0.71342 NaN 1 0 Median 0.98288 0.99204 13.126 2 0 Median NaN NaN NaN 0 0 Median 208900000 111270000 97634000 150850000 79450000 71399000 33597000 18426000 15171000 22058000 12284000 9774700 639120 360560 278550 1758700 747540 1011200 0 0 0 37891 2088;3120 39814 200824;200825;200826;200827;200828;200829;200830;200831;200832;200833;200834;200835;200836;200837;200838;200839 204061;204062;204063;204064;204065;204066;204067;204068;204069;204070;204071;204072;204073;204074 204063 14 VTYVVLDEADR DMLAANSGRVTNLRRVTYVVLDEADRMFDM NLRRVTYVVLDEADRMFDMGFEPQVMRIVD R V T D R M 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 3 0 0 11 0 1278.6456 Q7L014;A0A0C4DG89 Q7L014 523 533 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.00011265 125.48 By matching By MS/MS 1 1 0.82849 0.85418 11.3 2 Median 0.8155 0.78858 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84169 0.92523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26329000 14664000 11665000 4079600 2203500 1876100 0 0 0 22250000 12461000 9788700 0 0 0 0 0 0 0 0 0 37892 3216 39815 200840;200841 204075 204075 1 VVAAPQRPGTEPQPEMPDTVLQSETLK LQKRSEVAKDFEPERVVAAPQRPGTEPQPE QPEMPDTVLQSETLKDTAPVLEGLKEEEIT R V V L K D 2 1 0 1 0 3 3 1 0 0 2 1 1 0 5 1 3 0 0 3 0 0 27 1 2917.4855 O95202 O95202 500 526 LETM1 LETM1 and EF-hand domain-containing protein 1, mitochondrial yes yes 3 3.8094E-06 38.146 By MS/MS By matching By matching By matching 1 1 1 1 0.62053 0.6473 23.509 4 Median 0.522 0.53528 NaN 1 0 Median 0.52145 0.52387 NaN 1 0 Median 0.73766 0.78276 NaN 1 0 Median 0.83906 0.80741 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9819000 5465300 4353700 4486600 2931800 1554800 561470 346680 214790 4242500 1946300 2296200 528440 240500 287940 0 0 0 0 0 0 37893 1754 39816 200842;200843;200844;200845 204076;204077 204077 2 VVAEELENVR GLAEAGHLEGHCLVRVVAEELENVRILPHT HCLVRVVAEELENVRILPHTVLYMADSETF R V V V R I 1 1 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 10 0 1156.6088 Q8NEZ5;H3BTH6 Q8NEZ5 87 96 FBXO22 F-box only protein 22 yes no 2 0.00036244 87.308 By MS/MS By MS/MS By MS/MS 2 1 1 1.3596 1.2154 8.1018 3 Plateau 1.0511 1.0471 NaN 1 1 Median 1.3925 1.2154 NaN 1 0 Median 1.0988 1.192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25285000 11730000 13555000 10550000 5155800 5394200 8348300 3619000 4729300 6386700 2955000 3431700 0 0 0 0 0 0 0 0 0 37894 3432 39817 200846;200847;200848;200849 204078;204079;204080;204081;204082 204080 5 VVAEPVELAQEFR LSGYVELRYDDEVKRVVAEPVELAQEFRKF KRVVAEPVELAQEFRKFDLNSPWEAFPVYR R V V F R K 2 1 0 0 0 1 3 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 13 0 1485.7827 O75489 O75489 219 231 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 5.735E-07 130.94 By MS/MS By MS/MS By MS/MS By matching 1 2 2 3 1.0045 0.96699 19.941 8 Median 0.81826 0.77787 NaN 1 0 Median 1.1355 0.97669 17.247 2 0 Median 0.84046 0.86809 37.761 2 0 Median 1.2033 1.0816 14.637 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58335000 30417000 27918000 36355000 19328000 17027000 10509000 4696000 5813300 10697000 6033300 4663600 773390 359100 414280 0 0 0 0 0 0 37895 1678 39818 200850;200851;200852;200853;200854;200855;200856;200857 204083;204084;204085;204086;204087;204088;204089 204084 7 VVAEPVELAQEFRK LSGYVELRYDDEVKRVVAEPVELAQEFRKF RVVAEPVELAQEFRKFDLNSPWEAFPVYRQ R V V R K F 2 1 0 0 0 1 3 0 0 0 1 1 0 1 1 0 0 0 0 3 0 0 14 1 1613.8777 O75489 O75489 219 232 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 3 0.0077418 39.509 By MS/MS 1 0.65228 0.68089 NaN 1 Median 0.65228 0.68089 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15088000 8416900 6670900 15088000 8416900 6670900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37896 1678 39819 200858 204090 204090 1 VVAEVGDIPTVLVQNK TDRESFEAVSSWREKVVAEVGDIPTVLVQN VAEVGDIPTVLVQNKIDLLDDSCIKNEEAE K V V N K I 1 0 1 1 0 1 1 1 0 1 1 1 0 0 1 0 1 0 0 5 0 0 16 0 1679.9458 Q9ULC3 Q9ULC3 107 122 RAB23 Ras-related protein Rab-23 yes yes 2 9.7273E-05 72.006 By MS/MS By matching By matching 1 1 1 0.74718 0.69559 12.261 3 Median 0.74718 0.69559 NaN 1 0 Median 0.93944 0.80535 NaN 1 0 Median 0.66242 0.63126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9156400 5353700 3802700 7486800 4412100 3074700 422200 229790 192410 1247400 711800 535610 0 0 0 0 0 0 0 0 0 37897 4322 39820 200859;200860;200861 204091;204092 204092 2 VVAEVYDQER KAIQALNGRWFAGRKVVAEVYDQERFDNSD FAGRKVVAEVYDQERFDNSDLSA_______ K V V E R F 1 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 10 0 1206.5881 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8 A0A0J9YVP6 517 526 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 2.2942E-08 169.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 3 3 2 2 1.0521 0.96482 16.941 10 Median 1.0589 1.0686 NaN 1 0 Median 1.1232 0.95359 1.8523 3 0 Median 0.95632 0.98184 3.9081 3 1 Median 1.1551 0.97993 12.699 2 0 Median NaN NaN NaN 0 0 Median 0.6893 0.59334 NaN 1 1 Median 81362000 38219000 43143000 2158300 1032500 1125800 28879000 13156000 15723000 32895000 16401000 16494000 15389000 6583500 8805600 0 0 0 2040200 1045800 994370 37898 284 39821 200862;200863;200864;200865;200866;200867;200868;200869;200870;200871;200872 204093;204094;204095;204096;204097;204098;204099;204100;204101;204102;204103;204104;204105 204096 13 VVAEYLNGAVR GVVIYVNSRPCCVPRVVAEYLNGAVREESI CVPRVVAEYLNGAVREESIHCKSVEEISTL R V V V R E 2 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 3 0 0 11 0 1189.6455 H0Y6Y8;B1AL05;Q8N983;H0YBU8 H0Y6Y8 72 82 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.00042054 101.64 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0811 1.0971 20.858 5 Median 1.0666 1.0339 0.57263 2 2 Median 1.4406 1.1944 NaN 1 1 Median 1.0811 1.0971 NaN 1 1 Median 2.054 1.7015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41153000 18526000 22627000 24705000 11678000 13027000 8410500 3379800 5030700 5474300 2737300 2737000 2563300 731020 1832300 0 0 0 0 0 0 37899 570 39822 200873;200874;200875;200876;200877 204106;204107;204108;204109;204110 204106 5 VVAFMDHIR LAAAGLHASPMSADRVVAFMDHIRIFQEQV PMSADRVVAFMDHIRIFQEQVEKLKALHVD R V V I R I 1 1 0 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1086.5644 P10589;F1DAL7;F1DAL9 P10589 292 300 NR2F1 COUP transcription factor 1 no no 2 0.046568 31.934 By MS/MS By matching By matching By matching 1 1 1 1 1.2687 1.258 104.63 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82166 0.81092 NaN 1 0 Median 7.543 8.4139 NaN 1 0 Median 1.1629 1.3667 NaN 1 0 Median 1.384 1.1581 NaN 1 0 Median 17594000 8042100 9551900 0 0 0 0 0 0 11079000 6297800 4781400 2455200 301580 2153600 3391200 1218800 2172400 668400 223840 444570 37900 1941 39823 200878;200879;200880;200881 204111 204111 1 VVAHLYAR EADYLSSHLTEGPHRVVAHLYARQLTLEQL LTEGPHRVVAHLYARQLTLEQLHAVEISAV R V V A R Q 2 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 0 927.52904 Q9BRJ7;K7EIN2;K7ENA3;W4VSQ8 Q9BRJ7 108 115 NUDT16L1 Protein syndesmos yes no 2 0.0079765 64.803 By MS/MS By MS/MS By matching 1 1 1 1.1536 0.93641 17.027 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2461 1.1974 NaN 1 0 Median 1.0455 0.86347 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1536 0.93641 NaN 1 0 Median 10805000 4851600 5953000 0 0 0 0 0 0 9232600 4123900 5108700 1043700 495750 547900 0 0 0 528320 231940 296370 37901 3796 39824 200882;200883;200884 204112;204113;204114 204113 3 VVAIYDYTK ADGDPAWAPKNYIEKVVAIYDYTKDKDDEL KNYIEKVVAIYDYTKDKDDELSFMEGAIIY K V V T K D 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 2 2 0 0 9 0 1070.5648 B6VEX4;A0A0A0MRT6;Q8IZP0;E9PEZ7;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9;H0Y6B5;B7Z836 B6VEX4 336 344 ABI1;ABI2 Abl interactor 1;Abl interactor 2 yes no 2 0.0098224 48.794 By matching By MS/MS By MS/MS 1 1 1 1.0993 1.0829 12.411 3 Plateau 0.9783 0.86357 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0993 1.0829 NaN 1 0 Median 1.2269 1.0563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10552000 4765700 5786000 1217900 593960 623980 0 0 0 7960700 3579400 4381300 1373100 592310 780790 0 0 0 0 0 0 37902 171 39825 200885;200886;200887 204115;204116;204117 204115 3 VVALEQSR QWFREAYGAVTQTVRVVALEQSRQQRGWVF AVTQTVRVVALEQSRQQRGWVFTPGVDDAE R V V S R Q 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 900.50288 Q15126 Q15126 131 138 PMVK Phosphomevalonate kinase yes yes 2 0.012861 54.157 By MS/MS By MS/MS 2 1 1.3781 1.1457 29.282 3 Median 1.0623 1.066 40.991 2 1 Median 1.3781 1.1457 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3817500 1588200 2229300 2523700 1148600 1375100 1293900 439610 854250 0 0 0 0 0 0 0 0 0 0 0 0 37903 2931 39826 200888;200889;200890 204118;204119 204119 2 VVALIGVATAADTLVTK GGWLMLHAAIARPEKVVALIGVATAADTLV ALIGVATAADTLVTKFNQLPVELKKEVEMK K V V T K F 4 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 3 0 0 4 0 0 17 0 1640.9713 Q9NUJ1 Q9NUJ1 169 185 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2 0.04256 22.198 By MS/MS By matching By matching By matching 2 2 1 1 1.1522 1.123 15.106 5 Median 1.1881 1.1521 3.6136 2 0 Median 1.1116 0.96473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94838 0.98185 NaN 1 0 Median 1.6526 1.3968 NaN 1 0 Median 4625900 1999100 2626800 3272900 1443800 1829100 611300 243090 368210 0 0 0 0 0 0 524330 242160 282170 217360 70040 147320 37904 4115 39827 200891;200892;200893;200894;200895;200896 204120 204120 1 VVALSMSPVDDTFISGSLDK HDNKYIRYFPGHSKRVVALSMSPVDDTFIS MSPVDDTFISGSLDKTIRLWDLRSPNCQGL R V V D K T 1 0 0 3 0 0 0 1 0 1 2 1 1 1 1 4 1 0 0 3 0 0 20 0 2080.0398 Q6UXN9 Q6UXN9 110 129 WDR82 WD repeat-containing protein 82 yes yes 2 1.0261E-05 49.627 By MS/MS By matching By matching 2 2 1 0.82633 0.79297 10.135 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80881 0.77685 2.905 2 0 Median 1.0718 0.90681 8.1483 2 0 Median 0.7603 0.75188 NaN 1 0 Median NaN NaN NaN 0 0 Median 14584000 7514400 7069500 0 0 0 0 0 0 13432000 6952200 6480000 880200 417580 462620 271480 144600 126890 0 0 0 37905 3190 39828;39829 200897;200898;200899;200900;200901 204121;204122 204121 1682 2 VVANSKESYELR TKKYLKKNNLRDWLRVVANSKESYELRYFQ WLRVVANSKESYELRYFQINQDEE______ R V V L R Y 1 1 1 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 1 2 0 0 12 1 1393.7201 K7EMH1;K7ERI7;P35268 K7EMH1 69 80 RPL22 60S ribosomal protein L22 yes no 2;3 2.3938E-06 122.26 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 5 1 2 3 1.1346 1.0337 19.52 14 Median 1.1051 1.0853 6.5733 3 0 Median 1.1112 0.98107 15.213 5 0 Median 1.0008 1.0469 NaN 1 0 Median 1.2337 1.0033 0.70557 2 0 Median 1.1922 1.3402 12.252 3 0 Median NaN NaN NaN 0 0 Median 63613000 29142000 34471000 41885000 18825000 23060000 15088000 7236100 7851400 1376800 586990 789790 1540700 736900 803820 3723100 1757000 1966100 0 0 0 37906 1382 39830 200902;200903;200904;200905;200906;200907;200908;200909;200910;200911;200912;200913;200914;200915 204123;204124;204125;204126;204127;204128;204129;204130;204131;204132;204133;204134;204135;204136;204137;204138;204139 204126 17 VVAPSIIAAR CITLIGLFFAGIHKRVVAPSIIAARCRTVL GIHKRVVAPSIIAARCRTVLAEYNMSCDDT R V V A R C 3 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 2 0 0 10 0 995.61277 Q8N9A8;H3BMF1;H3BUT5 Q8N9A8 89 98 CNEP1R1 Nuclear envelope phosphatase-regulatory subunit 1 yes no 2 0.00038325 79.906 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.1338 0.89868 10.597 5 Median 0.80422 0.78373 NaN 1 0 Median 1.2169 1.0329 NaN 1 0 Median 0.8878 0.89868 NaN 1 0 Median 1.2417 0.97961 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1338 0.88184 NaN 1 0 Median 15510000 7801400 7708200 4741100 2614000 2127100 6507800 2918900 3588900 2967300 1699200 1268100 1054400 458420 596030 0 0 0 238920 110900 128030 37907 3397 39831 200916;200917;200918;200919;200920 204140;204141;204142;204143 204140 4 VVAQVLTLLDGASGDR DALCPQRGSRAPESRVVAQVLTLLDGASGD VAQVLTLLDGASGDREVVVVGATNRPDALD R V V D R E 2 1 0 2 0 1 0 2 0 0 3 0 0 0 0 1 1 0 0 3 0 0 16 0 1612.8784 Q9BVQ7 Q9BVQ7 321 336 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 1.7687E-05 70.488 By MS/MS 1 0.075144 0.064964 NaN 1 Median NaN NaN NaN 0 0 Median 0.075144 0.064964 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14410000 13721000 688950 0 0 0 14410000 13721000 688950 0 0 0 0 0 0 0 0 0 0 0 0 37908 3859 39832 200921 204144 204144 1 VVASGPGLEHGK SPFKADIEMPFDPSKVVASGPGLEHGKVGE PSKVVASGPGLEHGKVGEAGLLSVDCSEAG K V V G K V 1 0 0 0 0 0 1 3 1 0 1 1 0 0 1 1 0 0 0 2 0 0 12 0 1149.6142 O75369;E7EN95 O75369 1136 1147 FLNB Filamin-B yes no 2 0.0014082 54.982 By matching By MS/MS By matching By matching 2 3 1 1 0.9482 0.88972 12.336 6 Median 0.94142 0.92218 6.5088 2 0 Median 0.96424 0.84125 9.3637 2 0 Median 0.74453 0.82175 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0918 1.1119 NaN 1 0 Median NaN NaN NaN 0 0 Median 4083400 2200000 1883500 662840 340880 321960 2622000 1421300 1200800 400710 245710 154990 0 0 0 397840 192100 205740 0 0 0 37909 1664 39833 200922;200923;200924;200925;200926;200927;200928 204145;204146;204147;204148;204149 204149 5 VVAVFVQGPAWQFK VVDQPLKLMPQDWDRVVAVFVQGPAWQFKG RVVAVFVQGPAWQFKGWPWLLPDGSPVDIF R V V F K G 2 0 0 0 0 2 0 1 0 0 0 1 0 2 1 0 0 1 0 4 0 0 14 0 1574.8609 Q6P1J9;A0A3B3IRP5;A0A1B0GUB2 Q6P1J9 442 455 CDC73 Parafibromin yes no 2 0.0058665 37.065 By MS/MS 1 0.84926 0.85703 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84926 0.85703 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4430700 2344100 2086500 0 0 0 0 0 0 4430700 2344100 2086500 0 0 0 0 0 0 0 0 0 37910 3150 39834 200929 204150;204151 204151 2 VVDALGNAIDGK GAIVDVPVGEELLGRVVDALGNAIDGKGPI LGRVVDALGNAIDGKGPIGSKTRRRVGLKA R V V G K G 2 0 1 2 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1170.6245 P25705;K7EK77;K7ENJ4;K7ERX7;K7EJP1;K7EQH4 P25705 150 161 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2 3.2326E-06 120.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 1 1.2223 1.0432 21.952 7 Median 0.99935 0.91047 NaN 1 0 Median 1.2724 1.0704 34.162 3 0 Median 1.0495 1.0175 NaN 1 0 Median 1.2223 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2394 1.0432 NaN 1 0 Median 385790000 174600000 211190000 184610000 89607000 95004000 176390000 73765000 102620000 17445000 8017300 9427500 5238100 2099100 3139000 0 0 0 2102700 1106300 996380 37911 2135 39835 200930;200931;200932;200933;200934;200935;200936 204152;204153;204154;204155;204156;204157;204158;204159;204160;204161;204162 204155 11 VVDALGNAIDGKGPIGSK GAIVDVPVGEELLGRVVDALGNAIDGKGPI ALGNAIDGKGPIGSKTRRRVGLKAPGIIPR R V V S K T 2 0 1 2 0 0 0 4 0 2 1 2 0 0 1 1 0 0 0 2 0 0 18 1 1709.9312 P25705;K7EK77;K7ENJ4;K7ERX7;K7EJP1 P25705 150 167 ATP5A1 ATP synthase subunit alpha, mitochondrial yes no 2;3 1.1924E-31 201.06 By MS/MS By matching By MS/MS 7 1 1 0.93818 0.91021 56.343 9 Median 0.89514 0.88405 49.494 7 2 Median 1.4237 1.3403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7456 1.8627 NaN 1 0 Median NaN NaN NaN 0 0 Median 197870000 107260000 90606000 189370000 103860000 85517000 1775200 665120 1110100 0 0 0 0 0 0 6716400 2736800 3979600 0 0 0 37912 2135 39836 200937;200938;200939;200940;200941;200942;200943;200944;200945 204163;204164;204165;204166;204167;204168;204169;204170 204165 8 VVDDEIYYFR MKKFKGLKRFSLSAKVVDDEIYYFRKPIVP SLSAKVVDDEIYYFRKPIVPQKEPSPLLEK K V V F R K 0 1 0 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 2 0 0 10 0 1317.6241 Q86U86;E7EVG2 Q86U86 1283 1292 PBRM1 Protein polybromo-1 yes no 2 5.4105E-05 134.91 By matching By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.5477 1.4318 30.429 8 Median NaN NaN NaN 0 0 Median 1.7217 1.4554 16.903 2 0 Median 1.4841 1.6245 66.463 2 1 Median 1.7461 1.5298 36.255 2 0 Median 1.5112 1.5874 NaN 1 0 Median 1.5289 1.2689 NaN 1 0 Median 46870000 21139000 25732000 0 0 0 7681600 2794600 4887000 34262000 16314000 17947000 1547700 587060 960620 3048400 1317000 1731500 330740 125770 204970 37913 3273 39837 200946;200947;200948;200949;200950;200951;200952;200953 204171;204172;204173;204174;204175;204176 204172 6 VVDDELATR QQRQLITVTMSSDSRVVDDELATRFLKSFK MSSDSRVVDDELATRFLKSFKANLENPIRL R V V T R F 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1016.5138 H0YD97;O00330 H0YD97 165 173 PDHX Pyruvate dehydrogenase protein X component, mitochondrial yes no 2 0.0028118 69.423 By MS/MS By MS/MS 2 2 0.9559 0.92757 27.423 3 Median 0.93053 0.91558 1.8405 2 0 Median 1.7333 1.4714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8733700 3299800 5434000 4165400 1736600 2428800 4568400 1563200 3005200 0 0 0 0 0 0 0 0 0 0 0 0 37914 1174 39838 200954;200955;200956;200957 204177;204178;204179;204180 204178 4 VVDFDETWNK KEFQHYTCTMSLKPRVVDFDETWNKLLTTI SLKPRVVDFDETWNKLLTTIKAVVMLEYVE R V V N K L 0 0 1 2 0 0 1 0 0 0 0 1 0 1 0 0 1 1 0 2 0 0 10 0 1251.5772 A0A0A0MTN0;Q13617;Q5T2B5;Q5T2B7 A0A0A0MTN0 20 29 CUL2 Cullin-2 yes no 2 0.00038066 80.239 By MS/MS By matching 1 1 1.215 1.0788 16.458 2 Median 1.0644 0.96026 NaN 1 0 Median 1.3868 1.2119 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24042000 9988500 14053000 14450000 6254300 8195400 9592300 3734200 5858100 0 0 0 0 0 0 0 0 0 0 0 0 37915 196 39839 200958;200959 204181 204181 1 VVDGAVGAQWLAEFR DVASMMSVTLSCDHRVVDGAVGAQWLAEFR VVDGAVGAQWLAEFRKYLEKPITMLL____ R V V F R K 3 1 0 1 0 1 1 2 0 0 1 0 0 1 0 0 0 1 0 3 0 0 15 0 1616.8311 P10515;H0YDD4;E9PEJ4 P10515 622 636 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 2 0.00037043 60.434 By MS/MS By MS/MS 2 1 1.3913 1.3986 35.413 3 Plateau 1.0231 1.0224 44.317 2 0 Median 1.5777 1.3604 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4462500 2155900 2306600 3060900 1553400 1507500 1401500 602420 799110 0 0 0 0 0 0 0 0 0 0 0 0 37916 1938 39840 200960;200961;200962 204182;204183 204182 2 VVDGAVGAQWLAEFRK DVASMMSVTLSCDHRVVDGAVGAQWLAEFR VDGAVGAQWLAEFRKYLEKPITMLL_____ R V V R K Y 3 1 0 1 0 1 1 2 0 0 1 1 0 1 0 0 0 1 0 3 0 0 16 1 1744.9261 P10515;H0YDD4;E9PEJ4 P10515 622 637 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial;Acetyltransferase component of pyruvate dehydrogenase complex yes no 3 0.00013723 45.014 By MS/MS 1 1.0942 1.0986 NaN 1 Median 1.0942 1.0986 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6573800 3358000 3215800 6573800 3358000 3215800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37917 1938 39841 200963 204184;204185 204185 2 VVDHVLGPLNSSTSLGQNTSTSSNLQR VSTTGTATDLESSAKVVDHVLGPLNSSTSL TSLGQNTSTSSNLQRTVVTVGNKNSHLDGS K V V Q R T 0 1 3 1 0 2 0 2 1 0 4 0 0 0 1 6 3 0 0 3 0 0 27 0 2810.4159 Q03164 Q03164 2242 2268 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 yes yes 3 1.3165E-28 96.793 By MS/MS By MS/MS 2 1 0.7479 0.78502 4.8821 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72856 0.78502 5.9475 2 0 Median 0.85724 0.75202 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16542000 8923800 7618500 0 0 0 0 0 0 15977000 8648600 7328100 565670 275290 290380 0 0 0 0 0 0 37918 2708 39842 200964;200965;200966 204186;204187;204188;204189;204190 204188 5 VVDLAPLHLDAR KALGYMERAAESYGKVVDLAPLHLDARISL YGKVVDLAPLHLDARISLSTLQQQLGQPEK K V V A R I 2 1 0 2 0 0 0 0 1 0 3 0 0 0 1 0 0 0 0 2 0 0 12 0 1317.7405 Q9Y5Q9;A0A494C1S7;H7C0C0 Q9Y5Q9 482 493 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2;3 0.00031953 66.435 By MS/MS By matching 2 1 0.85345 0.90848 71.866 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90215 0.96186 8.075 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33832 0.27812 NaN 1 0 Median 12344000 6408700 5935200 0 0 0 0 0 0 11766000 5995800 5770500 0 0 0 0 0 0 577590 412870 164720 37919 4467 39843 200967;200968;200969 204191;204192;204193 204191 3 VVDLEGSLK AGKDGPSLLVVEQVRVVDLEGSLKVVYPSK VVEQVRVVDLEGSLKVVYPSKADLATAPPH R V V L K V 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 958.53351 Q8N1G4 Q8N1G4 555 563 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.00025233 114.28 By MS/MS By matching By matching By MS/MS 1 1 1 1 1.0564 0.93429 15.51 4 Median 1.0098 0.94229 NaN 1 1 Median 1.1051 0.92635 NaN 1 0 Median 0.85859 0.8741 NaN 1 0 Median 1.455 1.2378 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41095000 19192000 21903000 23420000 10938000 12483000 9991900 4570800 5421100 3597100 1939300 1657800 4086000 1744400 2341600 0 0 0 0 0 0 37920 3359 39844 200970;200971;200972;200973 204194;204195 204194 2 VVDLLAPYAK MEMSVEQEILVTGIKVVDLLAPYAKGGKIG VTGIKVVDLLAPYAKGGKIGLFGGAGVGKT K V V A K G 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 2 0 0 10 0 1087.6277 P06576;H0YH81;F8W079 P06576 189 198 ATP5B ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta yes no 2 0.00057108 73.248 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 4 2 2 2 3 1 0.97082 0.90971 27.707 14 Median 0.92148 0.85819 3.9388 4 1 Median 1.0725 0.91114 13.915 2 0 Median 1.0363 1.0316 12.651 2 0 Median 0.99712 0.84569 50.221 2 0 Median 1.4202 1.4028 3.1851 3 0 Median 0.80823 0.6745 NaN 1 0 Median 240020000 116830000 123190000 152490000 77163000 75329000 63853000 28675000 35178000 14728000 7415300 7312300 1295500 536650 758890 7033800 2680100 4353700 618940 357820 261120 37921 1872 39845 200974;200975;200976;200977;200978;200979;200980;200981;200982;200983;200984;200985;200986;200987 204196;204197;204198;204199;204200;204201;204202;204203;204204;204205;204206;204207 204199 12 VVDLLAQDADIVCR TVVLGAQWGDEGKGKVVDLLAQDADIVCRC KVVDLLAQDADIVCRCQGGNNAGHTVVVDS K V V C R C 2 1 0 3 1 1 0 0 0 1 2 0 0 0 0 0 0 0 0 3 0 0 14 0 1585.8134 P30520 P30520 46 59 ADSS Adenylosuccinate synthetase isozyme 2 yes yes 2 0.00076503 61.353 By MS/MS 1 0.93112 0.78865 NaN 1 Median NaN NaN NaN 0 0 Median 0.93112 0.78865 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5389300 2661900 2727400 0 0 0 5389300 2661900 2727400 0 0 0 0 0 0 0 0 0 0 0 0 37922 2195 39846 200988 204208;204209 204209 2 VVDLLNQAALITNDSK QEEGPGIDGMTTSERVVDLLNQAALITNDS VDLLNQAALITNDSKITVLKQVQELIINKD R V V S K I 2 0 2 2 0 1 0 0 0 1 3 1 0 0 0 1 1 0 0 2 0 0 16 0 1712.9309 Q92797;A0A087WUE9;M0R3C7;M0QXP5;M0R1C2;M0R180 Q92797 36 51 SYMPK Symplekin yes no 2;3 2.4001E-05 83.314 By matching By matching By MS/MS By matching By matching By matching 1 1 4 1 1 1 0.89514 0.94071 32.241 9 Median 1.1666 1.1837 NaN 1 0 Median 1.0914 0.93471 NaN 1 0 Median 0.84469 0.89904 44.361 4 0 Median 0.84825 0.76652 NaN 1 0 Median 0.89123 0.94071 NaN 1 0 Median 1.1191 0.97252 NaN 1 0 Median 24823000 12882000 11942000 553910 249500 304410 1046000 475120 570890 21365000 11208000 10157000 132830 75819 57015 1598500 802730 795790 126810 70667 56147 37923 3558 39847 200989;200990;200991;200992;200993;200994;200995;200996;200997 204210;204211;204212 204211 3 VVDLLVIK VREMFMKNAHVTDPRVVDLLVIKGKIELEE AHVTDPRVVDLLVIKGKIELEETIKVWKQR R V V I K G 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 3 0 0 8 0 897.5899 P56556;A0A2Y9D025;R4GN43 P56556 78 85 NDUFA6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 yes no 2 0.0084743 62.717 By MS/MS By matching By MS/MS By matching By matching 1 3 1 1 1 1.5049 1.2283 28.283 7 Median 1.0836 0.98067 NaN 1 0 Median 1.7457 1.445 44.778 3 0 Median 1.0023 0.9629 NaN 1 0 Median 1.5049 1.2283 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5709 1.291 NaN 1 0 Median 57009000 25149000 31860000 27068000 12896000 14172000 4763600 1743000 3020600 7328000 3637500 3690500 878520 386260 492270 0 0 0 16971000 6486700 10484000 37924 408 39848 200998;200999;201000;201001;201002;201003;201004 204213;204214;204215;204216;204217 204217 5 VVDLMAHMASK KLISWYDNEFGYSNRVVDLMAHMASKE___ YSNRVVDLMAHMASKE______________ R V V S K E 2 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 11 0 1200.5995 P04406;E7EUT5 P04406 324 334 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 0.00016746 112.71 By MS/MS By MS/MS By MS/MS By MS/MS 11 17 4 4 1.1619 1.0419 31.299 36 Median 1.1209 1.0546 6.0819 11 0 Median 1.1811 1.0037 41.836 17 2 Median 1.2043 1.1667 4.0358 4 0 Median 0.99077 0.83673 29.457 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1223400000 554010000 669380000 678890000 308990000 369900000 469790000 210920000 258870000 69329000 31688000 37641000 5382100 2411200 2970900 0 0 0 0 0 0 37925 1850 39849;39850;39851 201005;201006;201007;201008;201009;201010;201011;201012;201013;201014;201015;201016;201017;201018;201019;201020;201021;201022;201023;201024;201025;201026;201027;201028;201029;201030;201031;201032;201033;201034;201035;201036;201037;201038;201039;201040 204218;204219;204220;204221;204222;204223;204224;204225;204226;204227;204228;204229;204230;204231;204232;204233;204234;204235;204236;204237;204238;204239;204240;204241;204242;204243;204244;204245;204246;204247;204248;204249;204250;204251;204252;204253;204254;204255;204256;204257;204258;204259;204260;204261;204262;204263;204264;204265 204232 613;614 48 VVDLMAHMASKE KLISWYDNEFGYSNRVVDLMAHMASKE___ SNRVVDLMAHMASKE_______________ R V V K E - 2 0 0 1 0 0 1 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 12 1 1329.6421 P04406;E7EUT5 P04406 324 335 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2;3 6.0969E-06 119.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 31 21 7 6 2 1 1.1531 1.0376 25.51 67 Plateau 1.126 1.043 28.779 30 1 Plateau 1.177 0.9858 16.367 21 2 Median 1.1387 1.0995 29.304 7 0 Median 0.99626 0.84869 25.49 6 1 Median 1.1943 1.1958 5.7074 2 0 Median 1.5409 1.294 NaN 1 0 Median 5289600000 2412900000 2876700000 3836500000 1759000000 2077600000 1150400000 516630000 633720000 231770000 103410000 128360000 43436000 21623000 21813000 26601000 11994000 14607000 909010 263800 645210 37926 1850 39852;39853 201041;201042;201043;201044;201045;201046;201047;201048;201049;201050;201051;201052;201053;201054;201055;201056;201057;201058;201059;201060;201061;201062;201063;201064;201065;201066;201067;201068;201069;201070;201071;201072;201073;201074;201075;201076;201077;201078;201079;201080;201081;201082;201083;201084;201085;201086;201087;201088;201089;201090;201091;201092;201093;201094;201095;201096;201097;201098;201099;201100;201101;201102;201103;201104;201105;201106;201107;201108 204266;204267;204268;204269;204270;204271;204272;204273;204274;204275;204276;204277;204278;204279;204280;204281;204282;204283;204284;204285;204286;204287;204288;204289;204290;204291;204292;204293;204294;204295;204296;204297;204298;204299;204300;204301;204302;204303;204304;204305;204306;204307;204308;204309;204310;204311;204312;204313;204314;204315;204316;204317;204318;204319;204320;204321;204322;204323;204324;204325;204326;204327;204328;204329;204330;204331;204332;204333;204334;204335;204336;204337;204338;204339;204340;204341;204342;204343;204344;204345;204346 204342 613;614 81 VVDNEGTLQLKR SLLINACLNKLLLYRVVDNEGTLQLKRSFP LYRVVDNEGTLQLKRSFPIEQSSHPVRSIF R V V K R S 0 1 1 1 0 1 1 1 0 0 2 1 0 0 0 0 1 0 0 2 0 0 12 1 1370.7518 Q9H1Z4;A0A087X091 Q9H1Z4 386 397 WDR13 WD repeat-containing protein 13 yes no 3 0.064869 21.23 By MS/MS 1 1.8066 1.591 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8066 1.591 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 677160 163350 513810 0 0 0 0 0 0 0 0 0 677160 163350 513810 0 0 0 0 0 0 37927 3937 39854 201109 204347 204347 1 VVDNSALGNSPYHR TTGSLSAIQKMTRVRVVDNSALGNSPYHRA RVVDNSALGNSPYHRAPRCIHVYKKNGVGK R V V H R A 1 1 2 1 0 0 0 1 1 0 1 0 0 0 1 2 0 0 1 2 0 0 14 0 1527.743 Q6P1L8 Q6P1L8 40 53 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 2;3 2.1391E-08 136.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 3 2 2 1 1.0308 1.0277 13.794 12 Median 0.88198 0.86567 3.7201 4 0 Median 1.3296 1.1316 3.5601 3 0 Median 0.89754 0.90992 13.182 2 0 Median 1.4204 1.1189 7.9997 2 0 Median 1.0786 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median 87885000 41106000 46778000 14022000 7361900 6660300 56598000 25608000 30990000 11353000 5485100 5867900 5260300 2285000 2975300 650670 366000 284670 0 0 0 37928 3151 39855 201110;201111;201112;201113;201114;201115;201116;201117;201118;201119;201120;201121 204348;204349;204350;204351;204352;204353;204354;204355;204356;204357;204358;204359;204360;204361;204362;204363;204364;204365 204360 18 VVDPFSK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR K V V S K K 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 7 0 790.4225 P61247;E9PFI5;H0Y9Y4;H0Y8L7;D6RI02 P61247 21 27 RPS3A 40S ribosomal protein S3a yes no 2 0.040883 57.281 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5455100 0 5455100 0 0 0 4313100 0 4313100 0 0 0 1142000 0 1142000 0 0 0 0 0 0 37929 2553 39856 201122;201123 204366;204367 204367 2 VVDPFSKK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA KKGAKKKVVDPFSKKDWYDVKAPAMFNIRN K V V K K D 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 0 8 1 918.51747 P61247;E9PFI5;H0Y9Y4;H0Y8L7;D6RI02 P61247 21 28 RPS3A 40S ribosomal protein S3a yes no 2 0.0054133 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.94621 0.88683 15.319 5 Median 0.82219 0.79638 NaN 1 0 Median 0.98891 0.90839 3.3973 2 0 Median NaN NaN NaN 0 0 Median 1.2599 1.1063 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87385 0.74339 NaN 1 0 Median 46796000 23008000 23787000 25374000 12844000 12530000 16090000 7587500 8502500 0 0 0 2686800 1242000 1444800 0 0 0 2645000 1334900 1310100 37930 2553 39857 201124;201125;201126;201127;201128 204368;204369;204370;204371;204372;204373;204374;204375 204374 8 VVDRDSEEAEIIR DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY IKVVDRDSEEAEIIRKYVKNTHATTHNAYD K V V I R K 1 2 0 2 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 13 1 1529.7686 P09874 P09874 803 815 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.8328E-40 218.01 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 10 14 4 10 1.0314 1.1016 13.738 40 Plateau 0.908 1.0102 7.6135 3 0 Plateau 0.97528 0.94025 NaN 1 0 Median 0.97308 1.1355 10.234 9 0 Median 1.1343 1.0524 16.346 14 0 Median 0.81529 0.88063 19.744 4 2 Median 1.1151 0.99233 8.6553 9 0 Median 1384900000 667370000 717520000 38346000 19582000 18764000 8195300 3524000 4671200 852530000 422860000 429670000 394270000 176850000 217420000 46823000 24428000 22395000 44722000 20128000 24594000 37931 1922 39858 201129;201130;201131;201132;201133;201134;201135;201136;201137;201138;201139;201140;201141;201142;201143;201144;201145;201146;201147;201148;201149;201150;201151;201152;201153;201154;201155;201156;201157;201158;201159;201160;201161;201162;201163;201164;201165;201166;201167;201168;201169;201170 204376;204377;204378;204379;204380;204381;204382;204383;204384;204385;204386;204387;204388;204389;204390;204391;204392;204393;204394;204395;204396;204397;204398;204399;204400;204401;204402;204403;204404;204405;204406;204407;204408;204409;204410;204411;204412;204413;204414;204415;204416;204417;204418;204419;204420;204421;204422;204423;204424;204425;204426;204427;204428;204429;204430 204406 53 VVDRDSEEAEIIRK DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY KVVDRDSEEAEIIRKYVKNTHATTHNAYDL K V V R K Y 1 2 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 14 2 1657.8635 P09874 P09874 803 816 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 4.9128E-07 122.33 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 18 24 5 8 1.0274 1.0663 21.517 58 Median 0.88296 0.951 7.2867 2 0 Median 1.24 1.345 NaN 1 0 Median 0.93145 1.046 18.969 18 0 Median 1.2216 1.2037 21.089 24 0 Median 0.97304 1.1383 35.212 5 0 Median 1.0849 0.94084 14.513 8 0 Median 890330000 438340000 451990000 15771000 8462300 7309100 2554900 1152200 1402700 675220000 338540000 336680000 137800000 62113000 75691000 34401000 17141000 17259000 24573000 10935000 13638000 37932 1922 39859 201171;201172;201173;201174;201175;201176;201177;201178;201179;201180;201181;201182;201183;201184;201185;201186;201187;201188;201189;201190;201191;201192;201193;201194;201195;201196;201197;201198;201199;201200;201201;201202;201203;201204;201205;201206;201207;201208;201209;201210;201211;201212;201213;201214;201215;201216;201217;201218;201219;201220;201221;201222;201223;201224;201225;201226;201227;201228 204431;204432;204433;204434;204435;204436;204437;204438;204439;204440;204441;204442;204443;204444;204445;204446;204447;204448;204449;204450;204451;204452;204453;204454;204455;204456;204457;204458;204459;204460;204461;204462;204463;204464;204465;204466;204467;204468;204469;204470;204471;204472;204473;204474;204475;204476;204477;204478;204479;204480;204481;204482;204483;204484;204485;204486;204487;204488;204489;204490;204491 204446 61 VVDSLYNK KTYEAALETIQNMSKVVDSLYNKAKKLT__ TIQNMSKVVDSLYNKAKKLT__________ K V V N K A 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 8 0 936.49165 O00231 O00231 410 417 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2 0.0034702 94.262 By MS/MS By MS/MS 1 1 1.1884 1.0665 2.0097 2 Median 1.1157 1.0514 NaN 1 1 Median 1.2658 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11571000 4815200 6755800 5467300 2467500 2999800 6103700 2347600 3756100 0 0 0 0 0 0 0 0 0 0 0 0 37933 1448 39860 201229;201230 204492;204493;204494 204493 3 VVDSMEDEVQR IRVDKSAADGPRVFRVVDSMEDEVQRRLQL RVFRVVDSMEDEVQRRLQLVRGGQAEKLGE R V V Q R R 0 1 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 0 3 0 0 11 0 1305.5871 Q9Y285;K7ER00;K7ER16 Q9Y285 128 138 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2 1.2794E-09 171.36 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1394 0.97387 11.17 5 Median 1.2815 1.218 NaN 1 0 Median 1.2145 1.0412 10.662 2 0 Median 0.9144 0.94453 NaN 1 0 Median 1.1367 0.97387 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30490000 14284000 16206000 11696000 5891700 5804000 7976700 3598200 4378500 4696400 2134000 2562400 6121700 2660500 3461200 0 0 0 0 0 0 37934 4379 39861 201231;201232;201233;201234;201235 204495;204496;204497;204498;204499;204500 204495 6 VVDSMEDEVQRR IRVDKSAADGPRVFRVVDSMEDEVQRRLQL VFRVVDSMEDEVQRRLQLVRGGQAEKLGEK R V V R R L 0 2 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 0 3 0 0 12 1 1461.6882 Q9Y285;K7ER00;K7ER16 Q9Y285 128 139 FARSA Phenylalanine--tRNA ligase alpha subunit yes no 2;3 0.00036516 59.35 By MS/MS By MS/MS 2 1 0.98625 1.0332 17.978 3 Median 0.90484 0.89148 20.858 2 0 Median NaN NaN NaN 0 0 Median 0.98625 1.0652 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11162000 5332100 5829900 9935500 4688200 5247400 0 0 0 1226500 643910 582550 0 0 0 0 0 0 0 0 0 37935 4379 39862 201236;201237;201238 204501;204502;204503;204504;204505 204503 5 VVDVLDSIK GIFLKVGSAKPGLQKVVDVLDSIKTKGKSA KPGLQKVVDVLDSIKTKGKSADFTNFDPRG K V V I K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 3 0 0 9 0 986.56481 P00918 P00918 159 167 CA2 Carbonic anhydrase 2 yes yes 2 0.0017805 77.732 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2117 1.1003 56.251 5 Median 1.2117 1.1003 NaN 1 0 Median 1.5997 1.3492 5.8647 2 0 Median 1.1245 1.0702 NaN 1 0 Median 0.42246 0.35293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33938000 14616000 19321000 23658000 10181000 13477000 6675700 2503600 4172100 3493100 1866600 1626500 111240 65484 45758 0 0 0 0 0 0 37936 1827 39863 201239;201240;201241;201242;201243 204506;204507;204508;204509 204506 4 VVDVSVPR QVDTFSRWKTLLSRRVVDVSVPRLHMTGTF KTLLSRRVVDVSVPRLHMTGTFDLKKTLSY R V V P R L 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 8 0 869.49707 Q8IW75 Q8IW75 303 310 SERPINA12 Serpin A12 yes yes 2 0.06525 48.561 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37937 3321 39864 201244 204510 204510 1 VVDYSQFQESDDADEDYGR ______________________________ SQFQESDDADEDYGRDSGPPTKKIRSSPRE K V V G R D 1 1 0 5 0 2 2 1 0 0 0 0 0 1 0 2 0 0 2 2 0 0 19 0 2236.9033 Q9H1E3 Q9H1E3 10 28 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 2;3 1.3431E-30 187.57 By matching By MS/MS By MS/MS 1 3 2 0.77719 0.81691 13.378 6 Median 0.75528 0.76422 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.71107 0.69191 13.479 3 0 Median 1.0545 0.91522 3.1925 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38995000 20964000 18031000 1725700 965710 760010 0 0 0 36057000 19433000 16624000 1212300 565370 646880 0 0 0 0 0 0 37938 3935 39865 201245;201246;201247;201248;201249;201250 204511;204512;204513;204514;204515;204516;204517 204512 7 VVEATNSVTAVR SNQQLEDLINQGREKVVEATNSVTAVRIQP REKVVEATNSVTAVRIQPLEDIISAVWKEN K V V V R I 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 4 0 0 12 0 1244.6725 P46100 P46100 2335 2346 ATRX Transcriptional regulator ATRX yes yes 2 1.4973E-07 123.88 By MS/MS By MS/MS 1 2 1.0738 1.016 13.662 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0711 1.119 NaN 1 1 Median 1.0765 0.92243 NaN 1 1 Median 6408300 3257500 3150800 0 0 0 0 0 0 0 0 0 0 0 0 5177700 2762500 2415200 1230600 495030 735570 37939 2339 39866 201251;201252;201253 204518;204519;204520 204518 3 VVEDIEYLK EVLQYSAREAQDSKKVVEDIEYLKFDKGPW AQDSKKVVEDIEYLKFDKGPWLKQDNRTLY K V V L K F 0 0 0 1 0 0 2 0 0 1 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1106.5859 A0A087WXC5;E7ESZ7;O95299;H7C2W5;H7C1Y7;H7C2X4 A0A087WXC5 269 277 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 2 0.00056821 94.302 By MS/MS 2 0.85257 0.7944 2.8445 2 Median 0.85257 0.7944 2.8445 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17471000 8875400 8595800 17471000 8875400 8595800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37940 66 39867 201254;201255 204521;204522 204522 2 VVEELTR GSGMKREATADDLIKVVEELTRIH______ ATADDLIKVVEELTRIH_____________ K V V T R I 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 7 0 844.46543 Q16531 Q16531 1132 1138 DDB1 DNA damage-binding protein 1 yes yes 2 0.0054124 97.068 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 1 1.2003 1.0622 17.524 10 Median 1.2208 1.23 5.8142 3 1 Median 1.2189 1.0112 9.9359 3 1 Median 0.796 0.87399 1.4014 2 0 Median 1.7894 1.5213 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1582 0.9699 NaN 1 0 Median 43082000 19439000 23643000 4654700 2205000 2449700 25651000 11244000 14407000 8527900 4521600 4006300 3548400 1209800 2338700 0 0 0 699610 258390 441220 37941 2985 39868 201256;201257;201258;201259;201260;201261;201262;201263;201264;201265 204523;204524;204525;204526;204527;204528;204529;204530;204531;204532;204533;204534;204535 204533 13 VVEEPYTVR ELRSVEGLQEGSVLRVVEEPYTVREARIHV EGSVLRVVEEPYTVREARIHVRHVRDLLKS R V V V R E 0 1 0 0 0 0 2 0 0 0 0 0 0 0 1 0 1 0 1 3 0 0 9 0 1090.5659 O75153;K7EIG1;I3L2B0;A0A494C0R8;I3L318 O75153 118 126 CLUH Clustered mitochondria protein homolog yes no 2 0.021677 54.549 By MS/MS 1 0.3967 0.33204 NaN 1 Median NaN NaN NaN 0 0 Median 0.3967 0.33204 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9691400 6687000 3004400 0 0 0 9691400 6687000 3004400 0 0 0 0 0 0 0 0 0 0 0 0 37942 1651 39869 201266 204536 204536 1 VVEGPAQAMSR VIGRISAEGGEQVERVVEGPAQAMSRGTMI QVERVVEGPAQAMSRGTMIVGAATGGILLL R V V S R G 2 1 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 0 2 0 0 11 0 1143.5706 J3KQL8;Q9BQE5 J3KQL8 372 382 APOL2 Apolipoprotein L2 yes no 2 0.018812 35.511 By MS/MS 1 0.90893 0.88222 NaN 1 Median 0.90893 0.88222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1519200 719340 799880 1519200 719340 799880 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37943 1320 39870 201267 204537 204537 1 VVEGSFVYK KMLLYTEVTRYLDFKVVEGSFVYKGGKIYK RYLDFKVVEGSFVYKGGKIYKVPSTETEAL K V V Y K G 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 3 0 0 9 0 1026.5386 P31150;G5E9U5 P31150 104 112 GDI1 Rab GDP dissociation inhibitor alpha yes no 2 0.003417 65.252 By MS/MS By MS/MS 1 1 1.2722 1.1249 6.954 2 Median 1.1612 1.0709 NaN 1 0 Median 1.3939 1.1816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36217000 15957000 20260000 25347000 11617000 13730000 10870000 4339500 6530200 0 0 0 0 0 0 0 0 0 0 0 0 37944 2201 39871 201268;201269 204538;204539;204540;204541 204540 4 VVEGTPLIDGR WFLIQVLFYLLPIGKVVEGTPLIDGRRLKY PIGKVVEGTPLIDGRRLKYRLNGFYAFILT K V V G R R 0 1 0 1 0 0 1 2 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1154.6295 Q14739;A0A494C1L1 Q14739 280 290 LBR Lamin-B receptor yes no 2 0.00015911 114.5 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 1 0.7105 0.72302 12.215 9 Median 0.73412 0.72302 NaN 1 0 Median 1.0085 0.80646 14.638 3 1 Plateau 0.68688 0.68237 6.8486 4 1 Median 1.0359 0.89404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108650000 58862000 49783000 8660000 5124300 3535700 33809000 16071000 17738000 64889000 37051000 27839000 1287000 616300 670680 0 0 0 0 0 0 37945 2897 39872 201270;201271;201272;201273;201274;201275;201276;201277;201278 204542;204543;204544;204545;204546;204547;204548;204549;204550;204551;204552;204553;204554;204555 204545 14 VVEGTPLIDGRR WFLIQVLFYLLPIGKVVEGTPLIDGRRLKY IGKVVEGTPLIDGRRLKYRLNGFYAFILTS K V V R R L 0 2 0 1 0 0 1 2 0 1 1 0 0 0 1 0 1 0 0 2 0 0 12 1 1310.7306 Q14739;A0A494C1L1 Q14739 280 291 LBR Lamin-B receptor yes no 3 0.013046 34.75 By MS/MS By matching 1 1 1.0477 1.0541 12.502 2 Median NaN NaN NaN 0 0 Median 1.2286 1.1515 NaN 1 0 Median 0.89336 0.96489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7300400 3010800 4289500 0 0 0 6220100 2466200 3754000 1080200 544690 535560 0 0 0 0 0 0 0 0 0 37946 2897 39873 201279;201280 204556 204556 0 VVEIAPAAHLDPQLR HLYERDCSIQRRHQKVVEIAPAAHLDPQLR VVEIAPAAHLDPQLRTRLTSDSVKLAKQVG K V V L R T 3 1 0 1 0 1 1 0 1 1 2 0 0 0 2 0 0 0 0 2 0 0 15 0 1627.9046 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 274 288 PC Pyruvate carboxylase, mitochondrial yes no 2 0.034249 24.853 By MS/MS 1 1.5408 1.4894 NaN 1 Median 1.5408 1.4894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5976100 3742100 2234000 5976100 3742100 2234000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37947 1967 39874 201281 204557 204557 1 VVEIVDEK TTDISLIFAALKDSKVVEIVDEKVRRREEP AALKDSKVVEIVDEKVRRREEPEKWPLPPI K V V E K V 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 929.50696 Q6PKG0;A0A0B4J210;E5RH50;H0YBW1;H0YC73 Q6PKG0 466 473 LARP1 La-related protein 1 yes no 2 0.00012651 107.66 By MS/MS By MS/MS 1 1 0.91188 0.82426 3.2159 2 Median 0.86743 0.84322 NaN 1 0 Median 0.95862 0.80573 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41784000 22884000 18900000 6744800 3711700 3033100 35040000 19172000 15867000 0 0 0 0 0 0 0 0 0 0 0 0 37948 3176 39875 201282;201283 204558;204559;204560 204560 3 VVESGGPEILK SFMSQLLSSNNFLKKVVESGGPEILKGLEE FLKKVVESGGPEILKGLEERLLETVLGYIS K V V L K G 0 0 0 0 0 0 2 2 0 1 1 1 0 0 1 1 0 0 0 2 0 0 11 0 1126.6234 Q9H583;Q5T3Q7 Q9H583 1534 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes no 2 0.00098242 84.213 By matching By MS/MS By MS/MS By MS/MS 1 1 1 2 0.79961 0.67566 26.104 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60675 0.67566 NaN 1 0 Median 0.68683 0.62468 NaN 1 0 Median 1.1042 1.1564 NaN 1 1 Median 0.91762 0.77334 21.779 2 1 Median 18877000 9666600 9210900 0 0 0 0 0 0 5490400 3124600 2365800 1321000 779080 541920 6040600 2916800 3123900 6025500 2846100 3179300 37949 3086 39876 201284;201285;201286;201287;201288 204561;204562;204563 204563 3 VVESPDFSKDEDYLGK QIKEEEEKQVVEAEKVVESPDFSKDEDYLG VESPDFSKDEDYLGKVGMLNGGRRIDYVLQ K V V G K V 0 0 0 3 0 0 2 1 0 0 1 2 0 1 1 2 0 0 1 2 0 0 16 1 1826.8574 Q9Y6Y8 Q9Y6Y8 923 938 SEC23IP SEC23-interacting protein yes yes 3 0.0019792 31.876 By MS/MS By matching 1 1 1.1506 1.2084 NaN 1 Median 1.1506 1.2084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7726100 3482600 4243500 7145600 3149100 3996500 580520 333580 246940 0 0 0 0 0 0 0 0 0 0 0 0 37950 4502 39877 201289;201290 204564;204565 204564 2 VVETEDAYK CRILVGNKNDDPERKVVETEDAYKFAGQMG DDPERKVVETEDAYKFAGQMGIQLFETSAK K V V Y K F 1 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 2 0 0 9 0 1052.5026 Q15286;F5H157 Q15286 129 137 RAB35 Ras-related protein Rab-35 yes no 2 0.015787 43.246 By MS/MS By MS/MS By matching 1 1 1 1.2296 1.051 8.6383 3 Median 1.0296 0.99931 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2296 1.1825 NaN 1 0 Median 1.2872 1.051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3470900 1601000 1869900 1090200 452080 638140 0 0 0 2119100 1058200 1060900 261620 90762 170860 0 0 0 0 0 0 37951 2938 39878 201291;201292;201293 204566;204567 204567 2 VVETELQEGATK LVLKSKSKTQGKQVKVVETELQEGATKQAT QVKVVETELQEGATKQATTPKPDKEKNTEE K V V T K Q 1 0 0 0 0 1 3 1 0 0 1 1 0 0 0 0 2 0 0 2 0 0 12 0 1302.6667 Q8NFC6 Q8NFC6 923 934 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 3.0793E-06 123.88 By MS/MS By MS/MS By matching 2 3 1 1.0434 0.99553 5.2353 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9006 0.98297 0.98448 2 0 Median 1.1035 1.011 2.1122 3 0 Median NaN NaN NaN 0 0 Median 1.0429 0.89387 NaN 1 0 Median 22457000 11091000 11366000 0 0 0 0 0 0 16227000 8229200 7997700 5077000 2331800 2745200 0 0 0 1153600 530440 623140 37952 3434 39879 201294;201295;201296;201297;201298;201299 204568;204569;204570;204571;204572;204573;204574;204575 204569 8 VVEVLAGHGHLYSR CLDTAVENMPSLKMKVVEVLAGHGHLYSRI KVVEVLAGHGHLYSRIPGLLSPHPLLQLSY K V V S R I 1 1 0 0 0 0 1 2 2 0 2 0 0 0 0 1 0 0 1 3 0 0 14 0 1535.8209 P49327 P49327 1242 1255 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2;3 2.6702E-23 194.17 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 1 1.1805 1.1821 22.699 14 Median 1.0642 1.0114 10.131 6 0 Median 1.5886 1.264 14.026 5 0 Median 1.1172 1.2208 3.0691 2 2 Median NaN NaN NaN 0 0 Median 2.0876 2.18 NaN 1 0 Median NaN NaN NaN 0 0 Median 877240000 366850000 510380000 391410000 181800000 209610000 460630000 174780000 285850000 19879000 8796500 11083000 0 0 0 5321000 1476400 3844500 0 0 0 37953 2377 39880 201300;201301;201302;201303;201304;201305;201306;201307;201308;201309;201310;201311;201312;201313 204576;204577;204578;204579;204580;204581;204582;204583;204584;204585;204586;204587;204588;204589;204590;204591;204592;204593;204594;204595;204596;204597;204598;204599;204600;204601 204579 26 VVFDSAQR CSLLPLGCWSADSQRVVFDSAQRSRQDLFA WSADSQRVVFDSAQRSRQDLFAVDTQVGTV R V V Q R S 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 920.47158 C9JIF9;P13798;H7C1U0;H0YFE5 C9JIF9 376 383 APEH Acylamino-acid-releasing enzyme yes no 2 0.011256 67.981 By MS/MS By MS/MS 1 1 1.2095 1.1097 5.414 2 Median 1.0994 1.068 NaN 1 0 Median 1.3307 1.153 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7435300 3418500 4016800 3316100 1585600 1730500 4119200 1832900 2286300 0 0 0 0 0 0 0 0 0 0 0 0 37954 699 39881 201314;201315 204602;204603;204604 204603 3 VVFEQTK IGEKLDEREAGITEKVVFEQTKVIADNVKD REAGITEKVVFEQTKVIADNVKDWSKVVLA K V V T K V 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 7 0 849.45962 P60174;U3KPZ0;U3KQF3 P60174 180 186 TPI1 Triosephosphate isomerase yes no 2 0.0017105 110.61 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 3 1 1 1.1535 1.0055 17.936 10 Median 1.2816 1.2177 26.868 2 0 Median 1.1919 0.99321 3.2303 3 0 Median 1.0505 0.98486 7.4867 3 0 Plateau 1.2152 1.004 NaN 1 1 Median 1.4936 1.53 NaN 1 0 Median NaN NaN NaN 0 0 Median 134060000 61948000 72116000 84699000 39163000 45536000 23682000 10832000 12850000 22954000 10675000 12279000 1158300 561350 596910 1571200 717030 854130 0 0 0 37955 2523 39882 201316;201317;201318;201319;201320;201321;201322;201323;201324;201325 204605;204606;204607;204608;204609;204610;204611;204612;204613;204614 204609 10 VVFQEFR VLEGIRICRQGFPNRVVFQEFRQRYEILTP CRQGFPNRVVFQEFRQRYEILTPNSIPKGF R V V F R Q 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 923.4865 P35579 P35579 712 718 MYH9 Myosin-9 yes yes 2 0.0012078 132.72 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 1 2 2 1.2947 1.1438 28.08 13 Median 1.3488 1.3265 5.4562 3 1 Median 1.2443 1.0659 9.6347 4 0 Median 1.6746 1.8224 65.877 2 0 Median 1.2292 1.0785 NaN 1 0 Median 1.273 1.2977 NaN 1 1 Median 1.2651 1.0385 2.1201 2 0 Median 257790000 114850000 142940000 103950000 44979000 58975000 96009000 44602000 51408000 22677000 10230000 12447000 1734200 818730 915430 23890000 9990300 13899000 9521500 4230700 5290700 37956 2244 39883 201326;201327;201328;201329;201330;201331;201332;201333;201334;201335;201336;201337;201338;201339 204615;204616;204617;204618;204619;204620;204621;204622;204623;204624;204625;204626;204627;204628;204629;204630;204631;204632;204633;204634 204617 20 VVFRDPYR KDIIHDPGRGAPLAKVVFRDPYRFKKRTEL RGAPLAKVVFRDPYRFKKRTELFIAAEGIH K V V Y R F 0 2 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 2 0 0 8 1 1050.5611 P62917;E9PKU4;E9PKZ0;G3V1A1 P62917 61 68 RPL8 60S ribosomal protein L8 yes no 2 0.01616 97.602 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1.3429 1.2078 15.595 6 Median 1.0128 1.0903 NaN 1 0 Median 1.3429 1.1873 16.888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9885 1.072 NaN 1 0 Median 1.6838 1.4448 7.3312 2 0 Median 153800000 72430000 81373000 89135000 42079000 47056000 22470000 9191200 13278000 0 0 0 0 0 0 32901000 17249000 15651000 9297600 3910000 5387600 37957 2610 39884 201340;201341;201342;201343;201344;201345 204635;204636;204637;204638;204639;204640;204641;204642 204637 8 VVFSTGPQSTK AGYFDIYFEKNCHNRVVFSTGPQSTKTHWK CHNRVVFSTGPQSTKTHWKQTVFLLEKPFS R V V T K T 0 0 0 0 0 1 0 1 0 0 0 1 0 1 1 2 2 0 0 2 0 0 11 0 1149.603 O60678 O60678 467 477 PRMT3 Protein arginine N-methyltransferase 3 yes yes 2 0.020766 53.327 By MS/MS By MS/MS 1 1 1.5824 1.5275 NaN 1 Median 1.5824 1.5275 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2213900 911390 1302500 2213900 911390 1302500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37958 1625 39885 201346;201347 204643;204644 204643 2 VVFVFGPDK DPAEKDEKGMPVTARVVFVFGPDKKLKLSI MPVTARVVFVFGPDKKLKLSILYPATTGRN R V V D K K 0 0 0 1 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 3 0 0 9 0 1006.5488 P30041 P30041 133 141 PRDX6 Peroxiredoxin-6 yes yes 2 0.00064128 107.66 By MS/MS By matching By MS/MS By matching By matching By matching 2 2 1 1 2 1 1.0794 1.0119 26.592 9 Median 0.95578 0.9115 14.784 2 0 Median 1.254 1.181 28.11 2 0 Median 1.0794 1.0144 NaN 1 0 Median 1.1904 0.97661 NaN 1 0 Median 1.0493 1.0486 4.5185 2 0 Median 0.59937 0.53006 NaN 1 0 Median 87142000 43417000 43725000 65833000 33561000 32272000 9016100 4079000 4937200 7712500 3737700 3974700 351760 159830 191940 3962000 1684800 2277200 266760 194840 71925 37959 2179 39886 201348;201349;201350;201351;201352;201353;201354;201355;201356 204645;204646;204647;204648;204649 204646 5 VVFVFGPDKK DPAEKDEKGMPVTARVVFVFGPDKKLKLSI PVTARVVFVFGPDKKLKLSILYPATTGRNF R V V K K L 0 0 0 1 0 0 0 1 0 0 0 2 0 2 1 0 0 0 0 3 0 0 10 1 1134.6437 P30041 P30041 133 142 PRDX6 Peroxiredoxin-6 yes yes 2 0.0005312 107.57 By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 1 1.0206 0.99964 8.4277 7 Median 0.98788 0.99964 11.298 3 0 Median 1.1766 1.0717 NaN 1 0 Median 1.0128 1.021 6.1801 2 0 Median 1.0206 0.91947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 280590000 133690000 146900000 211670000 101310000 110360000 29446000 13065000 16380000 33342000 16477000 16865000 6134800 2834600 3300200 0 0 0 0 0 0 37960 2179 39887 201357;201358;201359;201360;201361;201362;201363 204650;204651;204652;204653;204654;204655;204656;204657;204658;204659;204660;204661 204652 12 VVGAMQLYSVDR QKWLLLTGISAQQNRVVGAMQLYSVDRKVS QNRVVGAMQLYSVDRKVSQPIEGHAASFAQ R V V D R K 1 1 0 1 0 1 0 1 0 0 1 0 1 0 0 1 0 0 1 3 0 0 12 0 1336.6809 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 181 192 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 7.4272E-15 188.04 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 2 1.2614 1.1535 28.532 13 Median 1.5776 1.1726 27.733 4 0 Linear 1.37 1.1535 39.336 5 1 Median 0.8822 0.96401 7.0896 2 0 Median 1.4041 1.2369 2.5574 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 396980000 169700000 227280000 181290000 74046000 107240000 160730000 70318000 90410000 42287000 20159000 22128000 12672000 5173700 7498500 0 0 0 0 0 0 37961 44 39888;39889 201364;201365;201366;201367;201368;201369;201370;201371;201372;201373;201374;201375;201376 204662;204663;204664;204665;204666;204667;204668;204669;204670;204671;204672;204673;204674;204675;204676;204677;204678;204679 204665 21 18 VVGAMQLYSVDRK QKWLLLTGISAQQNRVVGAMQLYSVDRKVS NRVVGAMQLYSVDRKVSQPIEGHAASFAQF R V V R K V 1 1 0 1 0 1 0 1 0 0 1 1 1 0 0 1 0 0 1 3 0 0 13 1 1464.7759 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 181 193 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 1.9081E-65 208.6 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 6 3 4 1 2 2 1.338 1.406 81.047 18 Median 1.3038 1.3062 11.474 6 3 Median 1.5252 1.4306 1.4806 3 2 Median 0.9925 1.1251 101.28 4 2 Median 0.14457 0.1309 NaN 1 0 Median 2.1145 2.3933 61.552 2 1 Median 2.3793 2.099 26.291 2 0 Median 310290000 139360000 170920000 219330000 95277000 124060000 22754000 9175500 13579000 53271000 28597000 24674000 1972000 1768000 204010 11404000 4130400 7273300 1553200 415110 1138100 37962 44 39890 201377;201378;201379;201380;201381;201382;201383;201384;201385;201386;201387;201388;201389;201390;201391;201392;201393;201394 204680;204681;204682;204683;204684;204685;204686;204687;204688;204689;204690;204691;204692;204693;204694;204695 204686 16 VVGAQSLK SKVDDFLANEAKGTKVVGAQSLKEMVSKLK NEAKGTKVVGAQSLKEMVSKLKKPRRIILL K V V L K E 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 800.4756 P52209;K7EMN2;K7EM49;K7EPF6 P52209 52 59 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.010468 58.815 By MS/MS By MS/MS 1 2 1.342 1.1997 14.74 3 Median 1.2361 1.1997 NaN 1 0 Median 1.5181 1.3066 19.646 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15412000 6433000 8978500 1838800 817830 1020900 13573000 5615100 7957600 0 0 0 0 0 0 0 0 0 0 0 0 37963 2447 39891 201395;201396;201397 204696;204697;204698 204698 3 VVGAVGSDEK VGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ LKGCKVVGAVGSDEKVAYLQKLGFDVVFNY K V V E K V 1 0 0 1 0 0 1 2 0 0 0 1 0 0 0 1 0 0 0 3 0 0 10 0 959.49238 Q14914;F2Z3J9 Q14914 169 178 PTGR1 Prostaglandin reductase 1 yes no 2 0.010105 44.349 By MS/MS By MS/MS By matching 2 1 1 0.89289 0.88407 13.522 4 Median 0.81046 0.7881 3.2375 2 0 Median 1.1408 0.96928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97787 1.0145 NaN 1 0 Median NaN NaN NaN 0 0 Median 2148000 1062800 1085100 1017000 539340 477690 428980 214290 214690 0 0 0 0 0 0 701980 309210 392770 0 0 0 37964 995 39892 201398;201399;201400;201401 204699;204700 204699 2 VVGAVIDQGLITR KRRRVLNRERRLRHRVVGAVIDQGLITRHH HRVVGAVIDQGLITRHHLKKRASSARANIT R V V T R H 1 1 0 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 0 3 0 0 13 0 1339.7823 E9PRG8;E9PLD3;A0A494BXY3 E9PRG8 36 48 C11orf98 Uncharacterized protein C11orf98 yes no 2 3.5884E-16 151.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 2 1.1057 0.98579 13.293 8 Median 1.0441 0.99281 4.8388 2 2 Median 1.1314 0.939 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1847 0.97651 NaN 1 0 Median 0.96814 0.98579 0.62404 2 1 Median 1.5394 1.2016 23.637 2 0 Median 89551000 42132000 47419000 77588000 36618000 40971000 2528400 1158200 1370200 0 0 0 692910 304560 388350 7226800 3442400 3784400 1514400 609410 905010 37965 984 39893 201402;201403;201404;201405;201406;201407;201408;201409 204701;204702;204703;204704;204705;204706;204707;204708;204709 204701 9 VVGCSCVVVK WVGLCKIDREGKPRKVVGCSCVVVKDYGKE GKPRKVVGCSCVVVKDYGKESQAKDVIEEY K V V V K D 0 0 0 0 2 0 0 1 0 0 0 1 0 0 0 1 0 0 0 5 0 0 10 0 1105.5624 P25398 P25398 103 112 RPS12 40S ribosomal protein S12 yes yes 2 0.011506 57.59 By MS/MS 1 1.0703 0.8831 NaN 1 Median NaN NaN NaN 0 0 Median 1.0703 0.8831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5883300 3529400 2353800 0 0 0 5883300 3529400 2353800 0 0 0 0 0 0 0 0 0 0 0 0 37966 2132 39894 201410 204710 204710 1 VVGDRENGSDNLPSSAGSGDKPLSDPAPF TFKSFEDRVGTIKSKVVGDRENGSDNLPSS SAGSGDKPLSDPAPF_______________ K V V P F - 2 1 2 4 0 0 1 4 0 0 2 1 0 1 4 5 0 0 0 2 0 0 29 2 2884.3475 O43399;A0A087WZ51 O43399 178 206 TPD52L2 Tumor protein D54 yes no 3 0.0064205 22.56 By MS/MS By matching 1 1 0.51574 0.51052 11.532 2 Median 0.52988 0.5539 NaN 1 0 Median 0.50197 0.47054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11358000 6934700 4423000 10154000 6265900 3888600 1203300 668840 534470 0 0 0 0 0 0 0 0 0 0 0 0 37967 1571 39895 201411;201412 204711;204712 204712 2 VVGDVAYDEAK GINYVPDDKKPNGRKVVGDVAYDEAKERAS NGRKVVGDVAYDEAKERASFITPVPGGVGP K V V A K E 2 0 0 2 0 0 1 1 0 0 0 1 0 0 0 0 0 0 1 3 0 0 11 0 1164.5663 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 252 262 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00015742 98.048 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2615 1.1223 8.4217 5 Median 1.2742 1.2575 NaN 1 0 Median 1.2206 1.0461 7.5324 2 0 Median 1.0217 1.1231 NaN 1 1 Median 1.332 1.1223 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53503000 23136000 30367000 3445700 1472300 1973400 44907000 18991000 25916000 3575300 1873300 1702100 1575400 799980 775420 0 0 0 0 0 0 37968 1968 39896 201413;201414;201415;201416;201417 204713;204714;204715;204716;204717;204718;204719;204720 204718 8 VVGDVAYDEAKER GINYVPDDKKPNGRKVVGDVAYDEAKERAS RKVVGDVAYDEAKERASFITPVPGGVGPMT K V V E R A 2 1 0 2 0 0 2 1 0 0 0 1 0 0 0 0 0 0 1 3 0 0 13 1 1449.71 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78 P11586 252 264 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2;3 2.8332E-06 105.86 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.0531 1.0243 10.441 6 Median 1.0065 1.0502 2.6665 2 0 Median 1.2126 1.1411 16.143 2 1 Median 0.88901 1.0101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0836 0.9392 NaN 1 0 Median 76116000 37201000 38915000 62247000 30619000 31628000 7489200 3392600 4096600 3108900 1652800 1456100 0 0 0 0 0 0 3270800 1536400 1734400 37969 1968 39897 201418;201419;201420;201421;201422;201423 204721;204722;204723;204724;204725;204726;204727;204728 204723 8 VVGESLSPAFHLQLEESTGSR CGQIHKALQGISGLKVVGESLSPAFHLQLE SPAFHLQLEESTGSREQDVRLLQEIVDQCM K V V S R E 1 1 0 0 0 1 3 2 1 0 3 0 0 1 1 4 1 0 0 2 0 0 21 0 2242.123 O15269 O15269 385 405 SPTLC1 Serine palmitoyltransferase 1 yes yes 3 7.5083E-05 49.973 By MS/MS 1 0.19404 0.19174 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19404 0.19174 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10050000 7336000 2714200 0 0 0 0 0 0 10050000 7336000 2714200 0 0 0 0 0 0 0 0 0 37970 1536 39898 201424 204729 204729 1 VVGFDAVMR DQERFLSDLRRDVQKVVGFDAVMRVRTSTG RRDVQKVVGFDAVMRVRTSTGIRAVDFFGA K V V M R V 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 3 0 0 9 0 992.51134 P53992;G5EA31 P53992 746 754 SEC24C Protein transport protein Sec24C yes no 2 0.0038329 62.546 By MS/MS By matching By MS/MS By MS/MS 2 1 2 1 1.0497 0.99533 21.011 6 Median 0.87014 0.85013 22.105 2 0 Median 1.1962 1.0128 NaN 1 0 Median 0.82761 0.89717 37.77 2 0 Median 1.1568 0.9967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21631000 11225000 10406000 11721000 6156800 5564400 4233000 2018500 2214600 5177400 2836200 2341200 499370 213930 285440 0 0 0 0 0 0 37971 1134 39899 201425;201426;201427;201428;201429;201430 204730;204731;204732 204730 3 VVGFHVLGPNAGEVTQGFAAALK KCYAKIICNTKDNERVVGFHVLGPNAGEVT PNAGEVTQGFAAALKCGLTKKQLDSTIGIH R V V L K C 4 0 1 0 0 1 1 4 1 0 2 1 0 2 1 0 1 0 0 4 0 0 23 0 2281.2219 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9 E9PIR7 435 457 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2;3 5.3142E-20 91.589 By MS/MS By matching By MS/MS By matching 4 1 2 1 1.3243 1.2755 26.657 8 Median 1.3243 1.2755 7.1088 4 0 Median 0.88499 0.78161 NaN 1 0 Median 1.4495 1.4909 5.4785 2 2 Median 0.88646 0.77899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23997000 9840600 14156000 17396000 6985400 10411000 705270 307020 398250 5571900 2364400 3207500 323760 183780 139980 0 0 0 0 0 0 37972 11 39900 201431;201432;201433;201434;201435;201436;201437;201438 204733;204734;204735;204736;204737;204738 204734 6 VVGKEQGQNLAR PMILVGNKCDLEDERVVGKEQGQNLARQWN DERVVGKEQGQNLARQWNNCAFLESSAKSK R V V A R Q 1 1 1 0 0 2 1 2 0 0 1 1 0 0 0 0 0 0 0 2 0 0 12 1 1297.7102 P61224;P62834;A6NIZ1;F5H7Y6;E7ESV4;F5GX62;F5GZG1;B7ZB78;F5H823 P61224 125 136 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 3 0.032082 21.631 By MS/MS By matching By matching 1 1 1 1.1821 1.2336 8.9254 3 Plateau 1.1734 1.2336 NaN 1 0 Median 1.1862 1.0449 NaN 1 0 Median 1.1821 1.2016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 871770 380060 491720 413970 187900 226070 155120 66608 88509 302680 125550 177140 0 0 0 0 0 0 0 0 0 37973 2551 39901 201439;201440;201441 204739 204739 1 VVGKPAQLGTQR QSKVSAPGVLTAQDRVVGKPAQLGTQRSQE QDRVVGKPAQLGTQRSQEADVQDWEFRKRD R V V Q R S 1 1 0 0 0 2 0 2 0 0 1 1 0 0 1 0 1 0 0 2 0 0 12 1 1252.7252 Q9C0C2;A0A2R8Y5C4 Q9C0C2 824 835 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 3 0.0011259 45.915 By MS/MS By MS/MS By matching By matching 1 2 1 1 0.92009 0.93874 10.678 5 Median 0.85109 0.87186 NaN 1 0 Median 0.96606 0.92761 13.471 2 0 Median 0.92009 1.0897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0568 0.93874 NaN 1 0 Median 2865800 1510100 1355700 515910 255990 259920 1651100 895300 755840 425340 223520 201830 0 0 0 0 0 0 273360 135260 138100 37974 3903 39902 201442;201443;201444;201445;201446 204740;204741 204741 2 VVGNPCPICR VPPQRTRKTCIRRNKVVGNPCPICRDHKLH IRRNKVVGNPCPICRDHKLHVDFRNVKLLE K V V C R D 0 1 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 0 0 2 0 0 10 0 1170.5638 Q9Y676 Q9Y676 100 109 MRPS18B 28S ribosomal protein S18b, mitochondrial yes yes 2 0.010957 43.246 By MS/MS 1 1.057 0.8899 NaN 1 Median NaN NaN NaN 0 0 Median 1.057 0.8899 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2016400 841580 1174800 0 0 0 2016400 841580 1174800 0 0 0 0 0 0 0 0 0 0 0 0 37975 4480 39903 201447 204742 204742 1 VVGNPFDSK YDEFVERSVARAKSRVVGNPFDSKTEQGPQ ARAKSRVVGNPFDSKTEQGPQVDETQFKKI R V V S K T 0 0 1 1 0 0 0 1 0 0 0 1 0 1 1 1 0 0 0 2 0 0 9 0 961.4869 P05091;S4R3S4 P05091 347 355 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 2 0.0040235 61.962 By MS/MS By MS/MS 1 1 1.2458 1.108 38.821 2 Median 0.90405 0.842 NaN 1 1 Median 1.7169 1.458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16912000 7154300 9757300 9642100 4268100 5374000 7269500 2886100 4383300 0 0 0 0 0 0 0 0 0 0 0 0 37976 1860 39904 201448;201449 204743;204744 204744 2 VVGPQQLHSETNER DINDDEFLHLPAHLRVVGPQQLHSETNERL RVVGPQQLHSETNERLFDEKYKPVVLTDDQ R V V E R L 0 1 1 0 0 2 2 1 1 0 1 0 0 0 1 1 1 0 0 2 0 0 14 0 1592.7907 Q9BSF4 Q9BSF4 198 211 C19orf52 Uncharacterized protein C19orf52 yes yes 3 0.017483 37.55 By MS/MS By MS/MS 1 1 1.0391 0.93026 1.1584 2 Median 0.99755 0.93791 NaN 1 0 Median 1.0825 0.92267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2092600 850950 1241700 1151600 489760 661830 941040 361200 579840 0 0 0 0 0 0 0 0 0 0 0 0 37977 3812 39905 201450;201451 204745;204746 204746 1 VVGQTTPESFEK VDAQEAKTEPFTQGKVVGQTTPESFEKAPQ QGKVVGQTTPESFEKAPQVTESIESSELVT K V V E K A 0 0 0 0 0 1 2 1 0 0 0 1 0 1 1 1 2 0 0 2 0 0 12 0 1320.6561 Q02952 Q02952 1111 1122 AKAP12 A-kinase anchor protein 12 yes yes 2 2.1675E-06 116.23 By MS/MS By MS/MS By MS/MS 2 4 1 1.1094 0.99209 26.821 7 Median 1.1831 1.1636 35.294 2 0 Median 1.0873 0.97246 21.9 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.475 1.2638 NaN 1 1 Median 137740000 63924000 73818000 27408000 10372000 17036000 107180000 52444000 54737000 0 0 0 0 0 0 0 0 0 3154000 1108800 2045200 37978 2705 39906 201452;201453;201454;201455;201456;201457;201458 204747;204748;204749;204750;204751;204752;204753;204754;204755 204751 9 VVGSEFVQK LAKAVAHHTTAAFIRVVGSEFVQKYLGEGP TAAFIRVVGSEFVQKYLGEGPRMVRDVFRL R V V Q K Y 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 1 0 0 0 3 0 0 9 0 991.53385 P43686 P43686 230 238 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.00062125 109.01 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1968 1.0596 25.465 4 Median 1.2218 1.132 NaN 1 0 Median 1.1723 0.99186 NaN 1 0 Median 1.5589 1.5464 NaN 1 0 Median 0.94758 0.84915 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42563000 19248000 23314000 12499000 6362100 6137100 21707000 9111000 12596000 3040600 1207600 1833100 5315700 2567900 2747900 0 0 0 0 0 0 37979 2327 39907 201459;201460;201461;201462 204756;204757;204758;204759;204760;204761;204762;204763 204757 8 VVGSELIQK LAKAVANQTSATFLRVVGSELIQKYLGDGP SATFLRVVGSELIQKYLGDGPKLVRELFRV R V V Q K Y 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 9 0 971.56515 P62191 P62191 250 258 PSMC1 26S protease regulatory subunit 4 yes yes 2 0.00098548 86.953 By MS/MS By MS/MS By matching 1 1 1 1.1473 1.0446 5.554 3 Median 1.1356 1.0446 NaN 1 0 Median 1.1473 0.96896 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3034 1.0799 NaN 1 0 Median 82848000 37997000 44851000 38605000 17953000 20652000 41288000 18588000 22700000 0 0 0 0 0 0 0 0 0 2955500 1456400 1499200 37980 2571 39908 201463;201464;201465 204764;204765;204766;204767 204767 4 VVGTIDQLVK PSSLSDAVPQRADHRVVGTIDQLVKRVIEG RADHRVVGTIDQLVKRVIEGSLSPKERTLL R V V V K R 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 3 0 0 10 0 1070.6336 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 600 609 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.0015613 64.42 By MS/MS By MS/MS 1 2 0.92521 0.94513 3.5583 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86512 0.92505 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93633 0.9681 3.3955 2 0 Median NaN NaN NaN 0 0 Median 27549000 13434000 14115000 0 0 0 0 0 0 8828100 4317000 4511200 0 0 0 18721000 9117100 9603900 0 0 0 37981 1437 39909 201466;201467;201468 204768;204769;204770;204771;204772 204769 5 VVGTIDQLVKR PSSLSDAVPQRADHRVVGTIDQLVKRVIEG ADHRVVGTIDQLVKRVIEGSLSPKERTLLK R V V K R V 0 1 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 3 0 0 11 1 1226.7347 M0R2Z9;Q8IX01;M0R3F6 M0R2Z9 600 610 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2;3 0.0001754 71.223 By MS/MS By MS/MS 1 3 0.98121 1.1119 24.208 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0776 1.223 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89342 1.0109 27.288 3 0 Median NaN NaN NaN 0 0 Median 19022000 10420000 8602000 0 0 0 0 0 0 3289200 1568600 1720600 0 0 0 15733000 8851200 6881400 0 0 0 37982 1437 39910 201469;201470;201471;201472 204773;204774;204775 204774 3 VVGVLLGSWQK VDHFNRIGKVGNQKRVVGVLLGSWQKKVLD NQKRVVGVLLGSWQKKVLDVSNSFAVPFDE R V V Q K K 0 0 0 0 0 1 0 2 0 0 2 1 0 0 0 1 0 1 0 3 0 0 11 0 1184.6917 P51665;H3BNT7;H3BTM8 P51665 35 45 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2 0.00015781 81.972 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.3355 1.1526 22.566 7 Median 1.2203 1.1324 2.5043 2 0 Median 1.3287 1.125 0.022528 2 0 Median 1.7912 1.8038 10.196 2 0 Median 1.5156 1.2679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 104900000 45982000 58920000 33374000 14908000 18466000 63446000 27776000 35670000 7479800 3059000 4420800 601390 238900 362480 0 0 0 0 0 0 37983 2440 39911 201473;201474;201475;201476;201477;201478;201479 204776;204777;204778;204779;204780;204781;204782;204783 204782 8 VVGVPVGSALPSTVK PGEGIAQSAKVQPSKVVGVPVGSALPSTVK VVGVPVGSALPSTVKQAVAISGGQILVAKA K V V V K Q 1 0 0 0 0 0 0 2 0 0 1 1 0 0 2 2 1 0 0 5 0 0 15 0 1408.829 Q9ULM3 Q9ULM3 650 664 YEATS2 YEATS domain-containing protein 2 yes yes 2 0.043672 23.851 By matching By MS/MS By matching 1 3 2 0.8055 0.71815 15.495 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66538 0.72151 NaN 1 0 Median 0.97763 0.88249 14.245 3 0 Median NaN NaN NaN 0 0 Median 0.76272 0.65277 3.7548 2 0 Median 5767300 3351800 2415500 0 0 0 0 0 0 4332100 2622800 1709300 904890 481830 423060 0 0 0 530330 247180 283150 37984 4326 39912 201480;201481;201482;201483;201484;201485 204784 204784 1 VVGWSGPVPR PANLPAVLLQPRWKRVVGWSGPVPRPRHGH PRWKRVVGWSGPVPRPRHGHRAVAIKELIV R V V P R P 0 1 0 0 0 0 0 2 0 0 0 0 0 0 2 1 0 1 0 3 0 0 10 0 1052.5767 A6NEM2;P51610 A6NEM2 22 31 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 0.00038325 79.906 By matching By MS/MS By MS/MS By matching By matching 1 3 2 1 2 1.0275 0.87187 78.15 9 Median NaN NaN NaN 0 0 Median 1.0441 0.89241 NaN 1 0 Median 0.59535 0.63704 38.376 3 0 Median 0.88161 0.76116 19.205 2 0 Median 1.9268 1.7234 NaN 1 0 Median 4.0504 3.3364 37.338 2 0 Median 22742000 12466000 10276000 0 0 0 2819800 1398500 1421300 9267900 6191800 3076100 8889400 4411800 4477600 668290 257040 411250 1096200 206820 889400 37985 509;2438 39913 201486;201487;201488;201489;201490;201491;201492;201493;201494 204785;204786;204787;204788 204785 2 VVGWSGPVPRPR PANLPAVLLQPRWKRVVGWSGPVPRPRHGH WKRVVGWSGPVPRPRHGHRAVAIKELIVVF R V V P R H 0 2 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 3 0 0 12 1 1305.7306 A6NEM2;P51610 A6NEM2 22 33 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 3 4.585E-05 88.441 By MS/MS 2 1.0259 1.179 75.072 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0259 1.179 75.072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19788000 11250000 8537800 0 0 0 0 0 0 19788000 11250000 8537800 0 0 0 0 0 0 0 0 0 37986 509;2438 39914 201495;201496 204789;204790;204791;204792 204791 4 VVHASGDASYSAGDSGDAAAQPAFTGIK TEKVVQETVLVEERRVVHASGDASYSAGDS DSGDAAAQPAFTGIKGKEGSALTEGAKEEG R V V I K G 7 0 0 3 0 1 0 4 1 1 0 1 0 1 1 4 1 0 1 2 0 0 28 0 2649.2307 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 694 721 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 3.0229E-14 58.272 By MS/MS By matching By matching 1 1 1 1.0239 0.99114 5.4801 3 Plateau 1.0239 0.99114 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8645 0.95072 NaN 1 0 Median 1.05 0.88912 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16516000 7866500 8649700 10977000 5017500 5959900 0 0 0 3658000 1918700 1739300 1880800 930270 950550 0 0 0 0 0 0 37987 156 39915 201497;201498;201499 204793;204794 204794 2 VVHIIQAR LSLDINKLPGEKLGRVVHIIQAREPSLRDS PGEKLGRVVHIIQAREPSLRDSNPEEIEID R V V A R E 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 8 0 934.57123 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;A0A0G2JHN8;A0A140T9I1 H0Y6K2 671 678 BRD2 Bromodomain-containing protein 2 yes no 2 0.0029621 102.98 By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1.257 1.2889 17.736 6 Plateau NaN NaN NaN 0 0 Median 0.93915 0.8312 NaN 1 0 Median 0.99379 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.257 1.323 3.885 2 0 Median 1.4608 1.2042 2.2185 2 0 Median 9852800 4057300 5795400 0 0 0 668930 299670 369260 1064200 535860 528360 0 0 0 4804200 1875500 2928700 3315400 1346300 1969100 37988 279 39916 201500;201501;201502;201503;201504;201505 204795;204796;204797;204798;204799;204800;204801 204797 7 VVHIIQSR LSLDINKLPGEKLGRVVHIIQSREPSLKNS PGEKLGRVVHIIQSREPSLKNSNPDEIEID R V V S R E 0 1 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 950.56615 O60885;Q58F21;Q15059 O60885 633 640 BRD4;BRDT;BRD3 Bromodomain-containing protein 4;Bromodomain testis-specific protein;Bromodomain-containing protein 3 no no 2 0.020415 46.426 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 3 2 3 1.2047 1.0949 17.682 13 Median 1.072 1.1279 NaN 1 0 Median 1.0479 0.97864 NaN 1 0 Median 1.0017 1.1082 35.967 3 0 Median 1.2841 1.1267 14.377 3 0 Median 1.0387 1.0942 0.086569 2 0 Median 1.3012 1.0839 4.4107 3 0 Median 17098000 7710900 9386800 118720 57827 60897 654640 304480 350150 5860800 2730000 3130700 1885600 746380 1139200 4767900 2202300 2565600 3810100 1670000 2140100 37989 1638;2923 39917 201506;201507;201508;201509;201510;201511;201512;201513;201514;201515;201516;201517;201518 204802;204803;204804;204805;204806;204807;204808;204809;204810 204804 9 VVHIMDFQR QGPRHMQKGRVETSRVVHIMDFQRGKNLRY RVETSRVVHIMDFQRGKNLRYQLLQLVEPF R V V Q R G 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1143.5859 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;B3KM87;D6RE02;D6RIA2;D6RBI2;D6RAY2;D6RAM9 P43243 399 407 MATR3 Matrin-3 yes no 2 0.0011047 85.212 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 1 1.0762 1.0013 17.03 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82394 0.90564 NaN 1 0 Median 1.4958 1.2654 NaN 1 1 Median 1.1586 1.1323 19.389 3 0 Plateau 1.2386 0.99015 NaN 1 0 Median 300080000 136660000 163420000 0 0 0 0 0 0 26916000 13147000 13768000 16865000 7654600 9210400 224240000 101770000 122470000 32062000 14087000 17975000 37990 297 39918 201519;201520;201521;201522;201523;201524;201525 204811;204812;204813;204814;204815;204816;204817;204818;204819 204814 9 VVHLGVGTPGR KHIKVQAQVKLLEKRVVHLGVGTPGRIKEL LEKRVVHLGVGTPGRIKELVKQGGLNLSPL R V V G R I 0 1 0 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 3 0 0 11 0 1090.6247 C9J384;Q9BQ75 C9J384 161 171 CMSS1 Protein CMSS1 yes no 2 0.039759 28.013 By matching By MS/MS 1 1 1.1248 1.0062 2.1721 2 Median 1.0431 0.99083 NaN 1 0 Median 1.2129 1.0217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6483200 2631200 3852000 4539300 1795700 2743600 1943900 835440 1108400 0 0 0 0 0 0 0 0 0 0 0 0 37991 673 39919 201526;201527 204820;204821 204820 2 VVHLLNDQHLGVVTAATSLITTLAQK RTSPDLVPMGDWTSRVVHLLNDQHLGVVTA VVTAATSLITTLAQKNPEEFKTSVSLAVSR R V V Q K N 3 0 1 1 0 2 0 1 2 1 5 1 0 0 0 1 4 0 0 4 0 0 26 0 2741.544 O94973;A0A0G2JS82;A0A0G2JQM1;E9PR62;A0A0G2JQA4;A0A0G2JRF9;A0A0G2JRS3;E9PNC4 O94973 192 217 AP2A2 AP-2 complex subunit alpha-2 yes no 3;4 0.033523 14.064 By MS/MS 4 1.2121 1.0708 9.6521 4 Median NaN NaN NaN 0 0 Median 1.2121 1.0708 9.6521 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7361800 2999700 4362100 0 0 0 7361800 2999700 4362100 0 0 0 0 0 0 0 0 0 0 0 0 37992 1741 39920 201528;201529;201530;201531 204822;204823;204824 204822 3 VVHNTALDPVHQPPPPPATLK IGLKLKIKQEAGLSKVVHNTALDPVHQPPP LDPVHQPPPPPATLKVAEPPPRPPPPPPPT K V V L K V 2 0 1 1 0 1 0 0 2 0 2 1 0 0 6 0 2 0 0 3 0 0 21 0 2227.2113 A0A087WWH3;Q9NZM4 A0A087WWH3 1269 1289 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein yes no 4 0.0014059 39.188 By MS/MS 1 0.46811 0.51664 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.46811 0.51664 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11352000 7708000 3644200 0 0 0 0 0 0 11352000 7708000 3644200 0 0 0 0 0 0 0 0 0 37993 59 39921 201532 204825 204825 1 VVHSYEELEENYTR IIFKAAYGGGGRGMRVVHSYEELEENYTRA RVVHSYEELEENYTRAYSEALAAFGNGALF R V V T R A 0 1 1 0 0 0 4 0 1 0 1 0 0 0 0 1 1 0 2 2 0 0 14 0 1766.8111 P11498;A0A494C016;A0A494C101;E9PRE7;A0A494C0T2 P11498 206 219 PC Pyruvate carboxylase, mitochondrial yes no 2;3 6.0803E-08 110.38 By MS/MS 3 1.021 0.98498 6.9447 3 Median 1.021 0.98498 6.9447 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24333000 11332000 13001000 24333000 11332000 13001000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 37994 1967 39922 201533;201534;201535 204826;204827;204828 204827 3 VVIARPTPPQAR TLGQQVPGFPTAPTRVVIARPTPPQARPSH PTRVVIARPTPPQARPSHPGGPPVSGTLQG R V V A R P 2 2 0 0 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 2 0 0 12 1 1303.7725 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;A0A0G2JIA9;A0A0G2JIB3;A0A0G2JJ92;H0Y759;H0Y7K4 P46379 502 513 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3 0.0026475 38.021 By MS/MS By matching By matching By MS/MS 1 1 1 1 0.70509 0.72974 18.254 4 Median 0.69716 0.77456 NaN 1 0 Median 0.71312 0.68751 NaN 1 0 Median 0.78835 0.9588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69554 0.62876 NaN 1 1 Median 10986000 5968100 5017500 3384100 1864400 1519700 5334700 2863800 2470900 1563200 836040 727120 0 0 0 0 0 0 703730 403900 299840 37995 8 39923 201536;201537;201538;201539 204829;204830 204829 2 VVIDAFR AVAVVVDPIQSVKGKVVIDAFRLINANMMV PIQSVKGKVVIDAFRLINANMMVLGHEPRQ K V V F R L 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 7 0 818.46504 O00487 O00487 155 161 PSMD14 26S proteasome non-ATPase regulatory subunit 14 yes yes 2 0.0026408 117.7 By MS/MS By MS/MS By MS/MS 1 1 1 1.1597 1.0684 6.8465 3 Plateau 1.1597 1.0834 NaN 1 0 Median 1.2171 1.0121 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1298 0.9448 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64355000 28378000 35976000 45572000 20022000 25549000 17454000 7692000 9762000 0 0 0 1329100 663860 665260 0 0 0 0 0 0 37996 1468 39924 201540;201541;201542 204831;204832;204833;204834;204835;204836 204832 6 VVIEACDELGIILAHTNLR GVAYIAAPSGSAADKVVIEACDELGIILAH ACDELGIILAHTNLRLFHH___________ K V V L R L 2 1 1 1 1 0 2 1 1 3 3 0 0 0 0 0 1 0 0 2 0 0 19 0 2135.1409 P31939 P31939 570 588 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes yes 3 0.0092776 31.462 By MS/MS 1 0.54352 0.4714 NaN 1 Median NaN NaN NaN 0 0 Median 0.54352 0.4714 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2804000 1598400 1205600 0 0 0 2804000 1598400 1205600 0 0 0 0 0 0 0 0 0 0 0 0 37997 2207 39925 201543 204837 204837 1 VVIEDEQLVLGASQEPVGR EFFAKARAGSVRLIKVVIEDEQLVLGASQE DEQLVLGASQEPVGRWDQDYDRAVLPLLDA K V V G R W 1 1 0 1 0 2 3 2 0 1 2 0 0 0 1 1 0 0 0 4 0 0 19 0 2037.0742 Q6IBS0;D6RG15 Q6IBS0 30 48 TWF2 Twinfilin-2 yes no 2 4.6502E-05 47.915 By matching By MS/MS By matching 1 1 1 1.2087 1.0674 4.7503 3 Median NaN NaN NaN 0 0 Median 1.2087 1.081 NaN 1 0 Median 0.91158 0.99004 NaN 1 0 Median 1.2586 1.0674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3097800 1599300 1498500 0 0 0 274300 118100 156200 2674900 1410500 1264400 148640 70705 77939 0 0 0 0 0 0 37998 3138 39926 201544;201545;201546 204838;204839 204838 2 VVIFDPSWNPATDAQAVDR TQVGGVGLTLTAATRVVIFDPSWNPATDAQ DPSWNPATDAQAVDRVYRIGQKENVVVYRL R V V D R V 3 1 1 3 0 1 0 0 0 1 0 0 0 1 2 1 1 1 0 3 0 0 19 0 2100.0276 B5MDQ0;Q2NKX8 B5MDQ0 428 446 ERCC6L DNA excision repair protein ERCC-6-like yes no 2 0.015053 36.284 By MS/MS 2 2.258 2.4385 0.68456 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.258 2.4385 0.68456 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3992400 1346400 2646000 0 0 0 0 0 0 3992400 1346400 2646000 0 0 0 0 0 0 0 0 0 37999 624 39927 201547;201548 204840;204841 204840 2 VVIFQQEQENK NHSGELLATGDKGGRVVIFQQEQENKIQSH KGGRVVIFQQEQENKIQSHSRGEYNVYSTF R V V N K I 0 0 1 0 0 3 2 0 0 1 0 1 0 1 0 0 0 0 0 2 0 0 11 0 1360.6987 P63151;E5RIY1 P63151 52 62 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2 3.3236E-06 157.68 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0492 0.93752 0.81997 4 Median 1.0081 0.9296 NaN 1 0 Median 1.12 0.94816 NaN 1 0 Median 0.96622 0.93616 NaN 1 0 Median 1.0919 0.93888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55715000 26954000 28761000 25930000 12596000 13335000 17283000 8328600 8954100 10675000 5141800 5533300 1826500 887530 939010 0 0 0 0 0 0 38000 2619 39928 201549;201550;201551;201552 204842;204843;204844;204845;204846;204847;204848;204849 204843 8 VVIFQQEQENKIQSHSR NHSGELLATGDKGGRVVIFQQEQENKIQSH IFQQEQENKIQSHSRGEYNVYSTFQSHEPE R V V S R G 0 1 1 0 0 4 2 0 1 2 0 1 0 1 0 2 0 0 0 2 0 0 17 1 2069.0654 P63151;E5RIY1 P63151 52 68 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 3 1.4614E-06 84.41 By MS/MS 1 1.2349 1.2363 NaN 1 Median 1.2349 1.2363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3330100 1269200 2060900 3330100 1269200 2060900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38001 2619 39929 201553 204850 204850 1 VVIGMDVAASEFFR ELLKTAIGKAGYTDKVVIGMDVAASEFFRS KVVIGMDVAASEFFRSGKYDLDFKSPDDPS K V V F R S 2 1 0 1 0 0 1 1 0 1 0 0 1 2 0 1 0 0 0 3 0 0 14 0 1539.7755 P06733;A0A2R8Y6G6 P06733 240 253 ENO1 Alpha-enolase yes no 2;3 7.4376E-08 113.47 By MS/MS By MS/MS By MS/MS 2 12 4 1.1731 1.06 58.885 17 Median 1.2482 1.1851 3.7429 2 0 Median 1.1344 0.95602 9.4007 11 1 Median 1.2051 1.1742 124.29 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 176140000 78566000 97575000 38547000 16621000 21926000 60081000 27437000 32644000 77513000 34508000 43005000 0 0 0 0 0 0 0 0 0 38002 1873 39930;39931 201554;201555;201556;201557;201558;201559;201560;201561;201562;201563;201564;201565;201566;201567;201568;201569;201570;201571 204851;204852;204853;204854;204855;204856;204857;204858;204859;204860;204861;204862;204863;204864;204865;204866;204867;204868;204869;204870;204871;204872;204873;204874;204875;204876;204877;204878 204854 634 28 VVIIGAGKPAAVVLQTK ADPEGHFETPIWIERVVIIGAGKPAAVVLQ IIGAGKPAAVVLQTKGSPESRLSFQHDPET R V V T K G 3 0 0 0 0 1 0 2 0 2 1 2 0 0 1 0 1 0 0 4 0 0 17 1 1663.0396 E9PKU7;Q14697;F5H6X6 Q14697 892 908 GANAB Neutral alpha-glucosidase AB no no 2;3 1.7294E-39 164.11 By MS/MS By MS/MS By MS/MS 6 2 1 0.87252 0.92176 7.7187 5 Median 0.87252 0.90195 9.7831 3 3 Median 1.0801 0.93638 NaN 1 1 Median 0.80654 0.92176 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152130000 81843000 70292000 135260000 73445000 61813000 11216000 5384000 5832400 5660900 3013700 2647200 0 0 0 0 0 0 0 0 0 38003 2896;951 39932 201572;201573;201574;201575;201576;201577;201578;201579;201580 204879;204880;204881;204882;204883;204884;204885;204886;204887;204888;204889 204880 11 VVINGQEVK LRSLVLDTKDLTIEKVVINGQEVKYALGER DLTIEKVVINGQEVKYALGERQSYKGSPME K V V V K Y 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 3 0 0 9 0 984.5604 P09960;B4DEH5 P09960 65 73 LTA4H Leukotriene A-4 hydrolase yes no 2 0.001536 80.438 By MS/MS By MS/MS By matching 2 1 1 0.97123 0.94578 10.308 4 Median 0.97123 0.94578 0.80764 2 0 Median 1.2727 1.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78524 0.82868 NaN 1 0 Median NaN NaN NaN 0 0 Median 19723000 8701600 11021000 6823400 3066100 3757300 10974000 4577500 6396300 0 0 0 0 0 0 1925500 1058000 867490 0 0 0 38004 1924 39933 201581;201582;201583;201584 204890;204891;204892 204892 3 VVINVPIFK FSTLTRNIRHRRGEKVVINVPIFKDKNTPS HRRGEKVVINVPIFKDKNTPSPFIETFTED K V V F K D 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 3 0 0 9 0 1027.643 B4E2I4;E1CEI4;A0A2R8YEL6;P48506;A0A0C4DGB2 B4E2I4 148 156 GCLC Glutamate--cysteine ligase catalytic subunit yes no 2 0.063058 27.525 By MS/MS By matching 1 1 0.94301 0.85796 4.4653 2 Median 0.9232 0.88548 NaN 1 0 Median 0.96324 0.83129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5803700 3022800 2780800 4498200 2349300 2148900 1305400 673520 631920 0 0 0 0 0 0 0 0 0 0 0 0 38005 399 39934 201585;201586 204893;204894 204893 2 VVIPTER NKEDFEKTLSQAIVKVVIPTERNLLALIHR TLSQAIVKVVIPTERNLLALIHRMIEFVVR K V V E R N 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 7 0 812.4756 O15042;E7ET15;H0Y8D9 O15042 419 425 U2SURP U2 snRNP-associated SURP motif-containing protein yes no 2 0.014908 81.297 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.9669 0.9488 14.145 5 Median 0.9669 0.96679 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82958 0.91262 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.0179 1.0689 16.854 2 0 Median 1.0036 0.81717 NaN 1 0 Median 14798000 7372300 7425400 438870 207570 231310 0 0 0 4198100 2333000 1865000 0 0 0 8520200 4116500 4403700 1640600 715230 925400 38006 1515 39935 201587;201588;201589;201590;201591 204895;204896 204896 2 VVIQEMLK YHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ DAGNSDRVVIQEMLKTVAQSQQLETNSQRD R V V L K T 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 2 0 0 8 0 958.55214 P40938 P40938 106 113 RFC3 Replication factor C subunit 3 yes yes 2 0.0034866 93.262 By MS/MS By matching By MS/MS By MS/MS By MS/MS 1 1 2 1 1 1.1088 1.0962 41.532 6 Median 1.1025 1.0268 NaN 1 0 Median 1.32 1.1278 NaN 1 0 Median 1.1088 1.1052 4.241 2 0 Median 1.3261 1.1204 NaN 1 0 Median 0.39803 0.3982 NaN 1 1 Median NaN NaN NaN 0 0 Median 49216000 25473000 23742000 8963700 4172600 4791100 1287100 595970 691090 27909000 12737000 15172000 1956100 797470 1158600 9100100 7170800 1929300 0 0 0 38007 2294 39936 201592;201593;201594;201595;201596;201597 204897;204898;204899;204900;204901;204902;204903 204897 7 VVIQSNDDIASR MMDDLELIGLDYLWRVVIQSNDDIASRAID LWRVVIQSNDDIASRAIDLLKEIYTNLGPR R V V S R A 1 1 1 2 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 12 0 1315.6732 Q93008 Q93008 777 788 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 1.2989E-06 167.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 1 1 1 1.1875 1.0434 60.067 9 Median 1.0827 1.0459 18.078 2 1 Median 1.1933 0.9843 92.778 4 0 Median 1.0927 1.195 NaN 1 0 Median 1.1875 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3075 1.0655 NaN 1 0 Median 129570000 57468000 72098000 30991000 14759000 16232000 85603000 36800000 48803000 9243600 4239700 5004000 2763900 1253900 1510000 0 0 0 964240 414820 549420 38008 3573 39937 201598;201599;201600;201601;201602;201603;201604;201605;201606 204904;204905;204906;204907;204908;204909;204910;204911;204912;204913;204914;204915;204916 204910 13 VVISLQLTAEKR LYPATTGRNFDEILRVVISLQLTAEKRVAT ILRVVISLQLTAEKRVATPVDWKDGDSVMV R V V K R V 1 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 1 1355.8136 P30041 P30041 163 174 PRDX6 Peroxiredoxin-6 yes yes 2;3 2.1368E-14 182.65 By MS/MS By MS/MS 2 2 1.2458 1.2356 6.704 4 Median 1.1892 1.2356 4.1025 2 0 Median 1.3638 1.2702 10.505 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124020000 55949000 68076000 117450000 53224000 64226000 6574100 2724000 3850100 0 0 0 0 0 0 0 0 0 0 0 0 38009 2179 39938 201607;201608;201609;201610 204917;204918;204919;204920;204921;204922;204923;204924;204925 204919 9 VVIVDPETGKEMSVYEAYRK RERKTSSKSSVRKRRVVIVDPETGKEMSVY PETGKEMSVYEAYRKGLIDHQTYLELSEQE R V V R K G 1 1 0 1 0 0 3 1 0 1 0 2 1 0 1 1 1 0 2 4 0 0 20 2 2312.1722 Q15149;H0YDN1 Q15149 4278 4297 PLEC Plectin yes no 4 0.0023164 38.271 By MS/MS 1 1.0252 1.3604 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0252 1.3604 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7429200 3564400 3864800 0 0 0 0 0 0 7429200 3564400 3864800 0 0 0 0 0 0 0 0 0 38010 2933 39939 201611 204926 204926 1 VVIVDPETNK KQVQTSQKNTLRKRRVVIVDPETNKEMSVQ LRKRRVVIVDPETNKEMSVQEAYKKGLIDY R V V N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 3 0 0 10 0 1112.6077 P15924 P15924 2466 2475 DSP Desmoplakin yes yes 2 0.035967 32.32 By MS/MS 1 1.3932 1.2217 NaN 1 Median NaN NaN NaN 0 0 Median 1.3932 1.2217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1389200 643990 745180 0 0 0 1389200 643990 745180 0 0 0 0 0 0 0 0 0 0 0 0 38011 2021 39940 201612 204927 204927 1 VVIVDPETNKEMSVQEAYKK KQVQTSQKNTLRKRRVVIVDPETNKEMSVQ PETNKEMSVQEAYKKGLIDYETFKELCEQE R V V K K G 1 0 1 1 0 1 3 0 0 1 0 3 1 0 1 1 1 0 1 4 0 0 20 2 2306.1828 P15924 P15924 2466 2485 DSP Desmoplakin yes yes 3;4 6.261E-09 78.012 By MS/MS By MS/MS By matching By matching 3 2 1 1 0.49413 0.57249 22.767 7 Median 0.53857 0.58965 13.518 3 0 Median NaN NaN NaN 0 0 Median 0.42535 0.51015 16.304 2 0 Median 0.51897 0.62531 NaN 1 0 Median 0.32609 0.3552 NaN 1 0 Median NaN NaN NaN 0 0 Median 55799000 37886000 17913000 28179000 17458000 10721000 0 0 0 13418000 8752600 4665500 404870 264820 140050 13797000 11410000 2386700 0 0 0 38012 2021 39941 201613;201614;201615;201616;201617;201618;201619 204928;204929;204930;204931 204928 3 VVIYHLR RLKVTFEDATDFFGRVVIYHLRVLGEKV__ DATDFFGRVVIYHLRVLGEKV_________ R V V L R V 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 2 0 0 7 0 898.53887 Q86WQ0 Q86WQ0 127 133 NR2C2AP Nuclear receptor 2C2-associated protein yes yes 2 0.0024619 126.05 By MS/MS By MS/MS 2 1 1.0248 0.93298 2.9878 2 Median 0.93782 0.91348 NaN 1 1 Median 1.1199 0.9529 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19826000 9716500 10110000 5577300 2945500 2631900 14249000 6771000 7478100 0 0 0 0 0 0 0 0 0 0 0 0 38013 3294 39942 201620;201621;201622 204932;204933;204934;204935 204935 4 VVKDFMVQGGDFSEGNGR STQKPLHYKSCLFHRVVKDFMVQGGDFSEG DFMVQGGDFSEGNGRGGESIYGGFFEDESF R V V G R G 0 1 1 2 0 1 1 4 0 0 0 1 1 2 0 1 0 0 0 3 0 0 18 1 1940.9051 C9JN15;C9JM79;Q13427 C9JN15 68 85 PPIG Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase G yes no 3 0.0048606 25.508 By MS/MS 1 0.83087 0.91435 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83087 0.91435 NaN 1 0 Median NaN NaN NaN 0 0 Median 4482000 2438800 2043200 0 0 0 0 0 0 0 0 0 0 0 0 4482000 2438800 2043200 0 0 0 38014 709 39943 201623 204936 204936 1 VVKGQVEYLLK EDEEEYVVEKVLDRRVVKGQVEYLLKWKGF LDRRVVKGQVEYLLKWKGFSEEHNTWEPEK R V V L K W 0 0 0 0 0 1 1 1 0 0 2 2 0 0 0 0 0 0 1 3 0 0 11 1 1274.7598 P45973;F8VNY3 P45973 30 40 CBX5 Chromobox protein homolog 5 yes no 2;3 0.0024128 68.224 By MS/MS 2 0.82885 0.88533 5.8466 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82885 0.88533 5.8466 2 0 Median NaN NaN NaN 0 0 Median 16517000 9111300 7405700 0 0 0 0 0 0 0 0 0 0 0 0 16517000 9111300 7405700 0 0 0 38015 2331 39944 201624;201625 204937;204938 204938 2 VVLAITDLSLPLGR TVSELVKVSAMSSPKVVLAITDLSLPLGRQ KVVLAITDLSLPLGRQVAAKAIAAL_____ K V V G R Q 1 1 0 1 0 0 0 1 0 1 4 0 0 0 1 1 1 0 0 2 0 0 14 0 1465.8868 F5GY88;A0A0B4J1W0;O75448;B9TX62 F5GY88 985 998 MED24 Mediator of RNA polymerase II transcription subunit 24 yes no 2 3.9687E-07 107.24 By MS/MS By MS/MS 1 1 1.4758 1.3527 34.091 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6053 1.7215 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3567 1.063 NaN 1 1 Median 3195900 1107400 2088400 0 0 0 0 0 0 1545100 518790 1026300 0 0 0 0 0 0 1650800 588660 1062100 38016 212 39945 201626;201627 204939;204940 204940 2 VVLAPQDVVVAR SQNFTLSIADESFARVVLAPQDVVVARYEE FARVVLAPQDVVVARYEEAMFHCQFSAQPP R V V A R Y 2 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 5 0 0 12 0 1264.7503 Q13308;Q86X91 Q13308 227 238 PTK7 Inactive tyrosine-protein kinase 7 yes no 2 0.00034761 81.338 By MS/MS By matching 1 2 0.87858 0.8033 16.358 3 Median 0.70088 0.67522 NaN 1 0 Median 0.9808 0.86727 10.837 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15058000 8694800 6363600 11936000 7194600 4741200 3122700 1500300 1622500 0 0 0 0 0 0 0 0 0 0 0 0 38017 2804 39946 201628;201629;201630 204941 204941 1 VVLATDPDADR VLELSLRLAEKENARVVLATDPDADRLAAA ENARVVLATDPDADRLAAAELQENGCWKVF R V V D R L 2 1 0 3 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1170.5881 Q6PCE3 Q6PCE3 327 337 PGM2L1 Glucose 1,6-bisphosphate synthase yes yes 2 0.00017484 85.676 By MS/MS By MS/MS 1 1 0.70897 0.64945 3.2743 2 Median 0.65655 0.63459 NaN 1 0 Median 0.76557 0.66467 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9353600 5749900 3603700 5983900 3759800 2224100 3369700 1990100 1379600 0 0 0 0 0 0 0 0 0 0 0 0 38018 3167 39947 201631;201632 204942;204943 204942 1 VVLAYEPVWAIGTGK EQTKVIADNVKDWSKVVLAYEPVWAIGTGK VVLAYEPVWAIGTGKTATPQQAQEVHEKLR K V V G K T 2 0 0 0 0 0 1 2 0 1 1 1 0 0 1 0 1 1 1 3 0 0 15 0 1601.8817 P60174;U3KPZ0;U3KQF3 P60174 198 212 TPI1 Triosephosphate isomerase yes no 2;3 4.1827E-06 80.979 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 5 3 2 3 0.98774 0.86518 12.439 17 Median 0.95692 0.89044 7.3081 4 1 Median 1.041 0.85819 7.4973 5 1 Median 0.95181 0.89339 19.941 3 1 Median 1.0666 0.87538 1.6585 2 0 Median 1.0094 1.0317 21.355 3 0 Plateau NaN NaN NaN 0 0 Median 1925100000 1006000000 919100000 1635800000 866330000 769440000 132150000 60352000 71796000 114010000 58659000 55351000 12717000 5998700 6717900 30459000 14666000 15793000 0 0 0 38019 2523 39948 201633;201634;201635;201636;201637;201638;201639;201640;201641;201642;201643;201644;201645;201646;201647;201648;201649 204944;204945;204946;204947;204948;204949;204950;204951;204952;204953;204954;204955;204956;204957;204958;204959;204960;204961;204962;204963;204964;204965;204966 204946 23 VVLDDKDYFLFR KVGDKVLLPEYGGTKVVLDDKDYFLFRDGD GTKVVLDDKDYFLFRDGDILGKYVD_____ K V V F R D 0 1 0 3 0 0 0 0 0 0 2 1 0 2 0 0 0 0 1 2 0 0 12 1 1528.7926 P61604;B8ZZ54 P61604 81 92 HSPE1 10 kDa heat shock protein, mitochondrial yes no 2;3 2.518E-05 99.653 By MS/MS By matching By MS/MS 2 2 1 1.2 1.1756 6.8545 5 Median 1.1734 1.1506 3.0366 2 0 Median 1.3878 1.2253 11.07 2 0 Median 1.2 1.2428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35404000 16111000 19293000 17880000 8179700 9700200 1491800 599560 892220 16032000 7331500 8700400 0 0 0 0 0 0 0 0 0 38020 2560 39949 201650;201651;201652;201653;201654 204967;204968;204969;204970;204971 204969 5 VVLEAPDETTLK PHTAAYLQELGRMRKVVLEAPDETTLKELA MRKVVLEAPDETTLKELAETLQQKNIDHML K V V L K E 1 0 0 1 0 0 2 0 0 0 2 1 0 0 1 0 2 0 0 2 0 0 12 0 1313.7078 Q6GMV3 Q6GMV3 81 92 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 yes yes 2 1.2864E-10 114.5 By MS/MS By MS/MS 2 1 0.83766 0.75198 13.634 2 Median NaN NaN NaN 0 0 Median 0.82741 0.68287 NaN 1 0 Median 0.84803 0.82809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9277200 4066300 5210900 0 0 0 5758200 2264300 3493900 3519000 1801900 1717000 0 0 0 0 0 0 0 0 0 38021 3135 39950 201655;201656;201657 204972;204973;204974 204974 3 VVLEAPLITESALEVVR GLQEKPDQKDGIFTKVVLEAPLITESALEV LEAPLITESALEVVRKYCEDESRTYLGMST K V V V R K 2 1 0 0 0 0 3 0 0 1 3 0 0 0 1 1 1 0 0 4 0 0 17 0 1837.0561 Q92797;A0A087WUE9 Q92797 667 683 SYMPK Symplekin yes no 2 2.3364E-10 101.6 By MS/MS 2 0.89687 0.96287 15.891 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89687 0.96287 15.891 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8836500 4800600 4035900 0 0 0 0 0 0 8836500 4800600 4035900 0 0 0 0 0 0 0 0 0 38022 3558 39951 201658;201659 204975;204976 204975 2 VVLEGPAPWGFR ______________________________ SFKVVLEGPAPWGFRLQGGKDFNVPLSISR K V V F R L 1 1 0 0 0 0 1 2 0 0 1 0 0 1 2 0 0 1 0 2 0 0 12 0 1326.7085 D6RF83;H7BYK4;D6RH06;Q9NR12;D6RAN1 D6RF83 6 17 PDLIM7 PDZ and LIM domain protein 7 yes no 2 0.0084586 57.598 By MS/MS 1 0.61631 0.65018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61631 0.65018 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1466800 836160 630630 0 0 0 0 0 0 1466800 836160 630630 0 0 0 0 0 0 0 0 0 38023 825 39952 201660 204977 204977 1 VVLEHEEVR KTTNPSKYIRFIYNRVVLEHEEVRAGAVSA RFIYNRVVLEHEEVRAGAVSALAKFGAQNE R V V V R A 0 1 0 0 0 0 3 0 1 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 1108.5877 Q9Y678 Q9Y678 480 488 COPG1 Coatomer subunit gamma-1 yes yes 2 0.0004478 126.41 By MS/MS By MS/MS By matching 1 1 1 0.90971 0.82549 40.756 3 Median 1.0917 1.0848 NaN 1 0 Median 0.56313 0.48663 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.90971 0.82549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10501000 5948800 4552100 1751300 787040 964310 8098100 4806600 3291500 0 0 0 651430 355120 296310 0 0 0 0 0 0 38024 4481 39953 201661;201662;201663 204978;204979;204980;204981 204980 4 VVLELKADVVPK LVYLDVDANGKPLGRVVLELKADVVPKTAE LGRVVLELKADVVPKTAENFRALCTGEKGF R V V P K T 1 0 0 1 0 0 1 0 0 0 2 2 0 0 1 0 0 0 0 4 0 0 12 1 1308.8017 P30405;R4GN99;H0Y548 P30405 62 73 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase yes no 2 0.01767 45.368 By MS/MS 1 1.3062 1.1753 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3062 1.1753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1396300 531670 864600 0 0 0 0 0 0 0 0 0 1396300 531670 864600 0 0 0 0 0 0 38025 2192 39954 201664 204982 204982 1 VVLENEAVR RTPVPSKYIRFIFNRVVLENEAVRAAAVSA RFIFNRVVLENEAVRAAAVSALAKFGAQNE R V V V R A 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 1027.5662 Q9UBF2 Q9UBF2 480 488 COPG2 Coatomer subunit gamma-2 yes yes 2 0.00062945 108.46 By MS/MS 1 0.99743 0.94394 NaN 1 Median 0.99743 0.94394 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8075200 3474700 4600500 8075200 3474700 4600500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38026 4238 39955 201665 204983;204984 204984 2 VVLFEMEAR KGSITISAEEIKDNRVVLFEMEARKLDNKD EIKDNRVVLFEMEARKLDNKDLFGKSDPYL R V V A R K 1 1 0 0 0 0 2 0 0 0 1 0 1 1 0 0 0 0 0 2 0 0 9 0 1092.5638 O75131;A0A087WYQ3;H0YB26;E5RHZ0 O75131 140 148 CPNE3 Copine-3 yes no 2 0.0025104 71.501 By MS/MS By matching By MS/MS 3 2 1 1.0876 1.0304 14.489 6 Median 1.1033 1.0469 20.344 3 0 Median 1.183 1.0145 12.426 2 0 Median 0.99828 1.0142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40906000 20125000 20781000 24323000 12212000 12111000 9048200 4282200 4766000 7534900 3630700 3904200 0 0 0 0 0 0 0 0 0 38027 1645 39956 201666;201667;201668;201669;201670;201671 204985;204986;204987;204988;204989 204988 5 VVLGEFGVR ______________________________ EEMRSRVVLGEFGVRNVHTTDFPGNYSGYD R V V V R N 0 1 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 9 0 974.55492 O15160;A0A2R8YEZ4;A0A2R8Y5D3;E7EQB9;A0A2R8Y8D6;H0Y723 O15160 14 22 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes no 2 0.00034235 136.11 By matching By matching By MS/MS By matching By matching By matching 2 2 2 1 1 2 1.1438 1.1471 18.639 10 Median 0.86877 0.83726 30.157 2 0 Median 1.3857 1.2103 0.20074 2 0 Median 1.1237 1.1518 7.9613 2 0 Median 1.3879 1.2102 NaN 1 0 Median 1.1535 1.2321 NaN 1 0 Median 1.1395 0.9747 3.7603 2 0 Median 47748000 22605000 25142000 12455000 6175400 6279600 1424100 566540 857520 27719000 13170000 14550000 2223400 894650 1328700 3178200 1405800 1772400 747520 393270 354250 38028 1528 39957 201672;201673;201674;201675;201676;201677;201678;201679;201680;201681 204990;204991;204992 204991 3 VVLHDGDPNEPVSDYINANIIMPEFETK NKNRYKNILPFDHTRVVLHDGDPNEPVSDY DYINANIIMPEFETKCNNSKPKKSYIATQG R V V T K C 1 0 3 3 0 0 3 1 1 3 1 1 1 1 3 1 1 0 1 3 0 0 28 0 3155.5121 Q06124 Q06124 290 317 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes yes 3 0.041362 10.516 By MS/MS By matching 1 1 0.57036 0.52708 0.12864 2 Median 0.5499 0.52661 NaN 1 0 Median 0.59158 0.52756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5305800 3339400 1966400 4902800 3086300 1816400 403030 253040 149990 0 0 0 0 0 0 0 0 0 0 0 0 38029 2721 39958 201682;201683 204993 204993 1 VVLIGDSGVGK ______________________________ YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE K V V G K S 0 0 0 1 0 0 0 3 0 1 1 1 0 0 0 1 0 0 0 3 0 0 11 0 1042.6023 H3BSC1;P62491;H3BMH2;B4DQU5;Q15907 Q15907 14 24 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B no no 2 0.00013635 110.87 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 1 1 1.2646 1.0851 32.455 11 Median 1.1711 1.0851 15.743 3 0 Median 1.6248 1.3482 49.542 4 0 Median 1.1448 1.0733 NaN 1 0 Median 1.3543 1.1224 NaN 1 0 Median 1.5369 1.5646 NaN 1 0 Median 1.2178 1.0055 NaN 1 0 Median 329500000 147870000 181630000 241250000 110490000 130760000 44003000 18367000 25636000 21570000 9694500 11876000 4624600 2011300 2613300 8957900 2970700 5987200 9097900 4338600 4759300 38030 1233;2976 39959 201684;201685;201686;201687;201688;201689;201690;201691;201692;201693;201694 204994;204995;204996;204997;204998;204999;205000;205001;205002;205003;205004;205005;205006;205007;205008;205009;205010 204998 17 VVLIGGKPDR TIKLFQECCPHSTDRVVLIGGKPDRVVECI HSTDRVVLIGGKPDRVVECIKIILDLISES R V V D R V 0 1 0 1 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 1 1052.6342 P61978;Q5T6W2 P61978 192 201 HNRNPK Heterogeneous nuclear ribonucleoprotein K no no 2 0.00017929 140.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 5 2 3 1.0749 1.0464 65.883 19 Median 0.93539 0.93579 14.813 2 0 Median 1.2372 1.128 7.3209 3 0 Median 0.9161 1.016 5.3709 4 0 Median 1.1399 1.0814 7.2335 5 0 Median 0.95753 0.96839 16.548 2 2 Median 0.62526 0.55097 151.7 3 2 Median 475130000 257810000 217320000 23965000 11687000 12278000 20247000 9208400 11038000 162830000 84497000 78330000 29111000 13060000 16050000 146670000 71456000 75215000 92312000 67904000 24408000 38031 2565;3093 39960 201695;201696;201697;201698;201699;201700;201701;201702;201703;201704;201705;201706;201707;201708;201709;201710;201711;201712;201713 205011;205012;205013;205014;205015;205016;205017;205018;205019;205020;205021;205022;205023;205024;205025;205026;205027;205028;205029;205030;205031;205032;205033;205034;205035;205036;205037;205038;205039;205040 205016 30 VVLLEDLASQVGLR QSFLTEFINYIKQSKVVLLEDLASQVGLRT KVVLLEDLASQVGLRTQDTINRIQDLLAEG K V V L R T 1 1 0 1 0 1 1 1 0 0 4 0 0 0 0 1 0 0 0 3 0 0 14 0 1510.8719 Q96HY6;A0A0A0MRX2 Q96HY6 228 241 DDRGK1 DDRGK domain-containing protein 1 yes no 2 6.9776E-06 92.866 By MS/MS 2 1.3851 1.2016 20.368 2 Median NaN NaN NaN 0 0 Median 1.3851 1.2016 20.368 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9678600 4192700 5485900 0 0 0 9678600 4192700 5485900 0 0 0 0 0 0 0 0 0 0 0 0 38032 3672 39961 201714;201715 205041;205042 205041 2 VVLLGEGCVGK GGGGAAAAGRAYSFKVVLLGEGCVGKTSLV YSFKVVLLGEGCVGKTSLVLRYCENKFNDK K V V G K T 0 0 0 0 1 0 1 3 0 0 2 1 0 0 0 0 0 0 0 3 0 0 11 0 1129.6165 Q9UL25 Q9UL25 22 32 RAB21 Ras-related protein Rab-21 yes yes 2 0.013466 56.729 By MS/MS 1 0.71462 0.60121 NaN 1 Median NaN NaN NaN 0 0 Median 0.71462 0.60121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4337300 2500000 1837300 0 0 0 4337300 2500000 1837300 0 0 0 0 0 0 0 0 0 0 0 0 38033 4320 39962 201716 205043 205043 1 VVLLTEVDK AQSQQLETNSQRDFKVVLLTEVDKLTKDAQ SQRDFKVVLLTEVDKLTKDAQHALRRTMEK K V V D K L 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 3 0 0 9 0 1014.5961 P40938 P40938 131 139 RFC3 Replication factor C subunit 3 yes yes 2 0.0028118 69.423 By matching By MS/MS 1 2 1.1065 1.1432 24.132 3 Median 0.84631 0.79339 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2008 1.1962 6.407 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24666000 11601000 13065000 3229100 1571800 1657300 0 0 0 21437000 10029000 11408000 0 0 0 0 0 0 0 0 0 38034 2294 39963 201717;201718;201719 205044;205045 205044 2 VVLLTEVDKLTK AQSQQLETNSQRDFKVVLLTEVDKLTKDAQ DFKVVLLTEVDKLTKDAQHALRRTMEKYMS K V V T K D 0 0 0 1 0 0 1 0 0 0 3 2 0 0 0 0 2 0 0 3 0 0 12 1 1356.8228 P40938 P40938 131 142 RFC3 Replication factor C subunit 3 yes yes 3 0.011882 26.711 By MS/MS By matching By MS/MS By matching By matching By matching 1 1 2 1 1 1 1.3277 1.2478 3.8984 7 Median 1.3277 1.2388 NaN 1 0 Median 1.4272 1.2973 NaN 1 0 Median 1.1371 1.2156 6.1467 2 0 Median 1.4013 1.2478 NaN 1 0 Median 1.1467 1.206 NaN 1 0 Median 1.5144 1.2935 NaN 1 0 Median 15152000 5982500 9169600 5139900 1985800 3154100 854180 289340 564850 7110200 2819100 4291100 476690 200360 276330 989740 456640 533100 581350 231260 350090 38035 2294 39964 201720;201721;201722;201723;201724;201725;201726 205046;205047 205047 2 VVLLTGETSTDLK YMDWYEKFQDRLNKKVVLLTGETSTDLKLL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K V V L K L 0 0 0 1 0 0 1 1 0 0 3 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7606 O75643 O75643 1405 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 4.1964E-07 157.95 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 1 2 1.2951 1.2734 10.494 10 Median 1.3503 1.2986 NaN 1 0 Median 1.2362 1.0946 NaN 1 0 Median 1.1258 1.2177 7.4652 3 1 Median 1.439 1.3127 14.545 2 0 Median 1.2733 1.3335 NaN 1 1 Median 1.6529 1.3822 14.362 2 1 Median 149710000 65733000 83980000 22418000 9113300 13304000 20355000 8846500 11509000 79064000 36482000 42582000 8809700 3505500 5304100 16247000 6941400 9305900 2819800 844340 1975500 38036 1688 39965 201727;201728;201729;201730;201731;201732;201733;201734;201735;201736 205048;205049;205050;205051;205052;205053;205054;205055;205056;205057;205058;205059;205060 205053 13 VVLPIEAPIR FLEPGDLRLLDVDNRVVLPIEAPIRMMITS DVDNRVVLPIEAPIRMMITSQDVLHSWAVP R V V I R M 1 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1105.6859 P00403 P00403 142 151 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 0.0003634 121.62 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 2 1 2 1 0.45877 0.40509 23.292 14 Median 0.38312 0.3689 3.5091 4 0 Median 0.72132 0.59536 10.203 4 0 Median 0.38874 0.38356 19.12 2 0 Median 0.50481 0.41596 NaN 1 0 Median 0.42354 0.43074 18.524 2 0 Median 0.48597 0.3945 NaN 1 0 Median 311920000 212120000 99801000 238900000 164170000 74732000 30585000 17417000 13169000 31918000 22993000 8925100 647870 421450 226420 8640700 6228700 2412000 1231000 894030 336970 38037 1819 39966 201737;201738;201739;201740;201741;201742;201743;201744;201745;201746;201747;201748;201749;201750 205061;205062;205063;205064;205065;205066;205067;205068;205069;205070;205071;205072;205073;205074;205075;205076;205077;205078;205079;205080 205065 20 VVLPTFILEK LHLLSQLKLGMDLTRVVLPTFILEKRSLLE MDLTRVVLPTFILEKRSLLEMYADFMSHPD R V V E K R 0 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 2 0 0 10 0 1157.706 Q9BXB4 Q9BXB4 386 395 OSBPL11 Oxysterol-binding protein-related protein 11 no no 2 0.046373 29.149 By MS/MS By matching 1 2 0.90895 0.79862 16.687 3 Median 0.91468 0.90131 NaN 1 0 Median 0.81748 0.71941 14.771 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6107900 3128100 2979900 2019900 973160 1046700 4088000 2154900 1933100 0 0 0 0 0 0 0 0 0 0 0 0 38038 3878 39967 201751;201752;201753 205081 205081 1 VVLPTFILEPR WTLLKQVRPGMDLSKVVLPTFILEPRSFLD DLSKVVLPTFILEPRSFLDKLSDYYYHADF K V V P R S 0 1 0 0 0 0 1 0 0 1 2 0 0 1 2 0 1 0 0 2 0 0 11 0 1282.7649 F8VUA7;F8VQX7;Q9BZF1 F8VUA7 398 408 OSBPL8 Oxysterol-binding protein;Oxysterol-binding protein-related protein 8 yes no 2 0.031209 31.074 By MS/MS By matching 1 1 0.69068 0.64347 1.8831 2 Median 0.65615 0.65209 NaN 1 0 Median 0.72702 0.63496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898200 1557100 1341100 1746900 949390 797490 1151300 607700 543610 0 0 0 0 0 0 0 0 0 0 0 0 38039 1061 39968 201754;201755 205082 205082 1 VVLPTFILER MHLLSQVRLGMDLTKVVLPTFILERRSLLE MDLTKVVLPTFILERRSLLEMYADFFAHPD K V V E R R 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 0 1 0 0 2 0 0 10 0 1185.7121 Q96SU4 Q96SU4 391 400 OSBPL9 Oxysterol-binding protein-related protein 9 yes yes 2 0.0070645 48.283 By MS/MS By MS/MS 2 3 0.99127 0.92469 6.0689 5 Median 0.96105 0.94615 8.5584 2 0 Median 1.0655 0.92469 5.2955 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12114000 6040000 6073700 6427600 3284200 3143400 5686100 2755800 2930300 0 0 0 0 0 0 0 0 0 0 0 0 38040 3738 39969 201756;201757;201758;201759;201760 205083;205084 205084 2 VVLPTLASLR SFNPVWDEEPFDFPKVVLPTLASLRIAAFE FDFPKVVLPTLASLRIAAFEEGGKFVGHRI K V V L R I 1 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 1 0 0 2 0 0 10 0 1067.6703 Q01970 Q01970 786 795 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 0.014222 39.022 By matching By matching By MS/MS By matching 1 1 1 2 1.1456 1.0017 11.263 5 Median 0.88195 0.8814 NaN 1 0 Median 1.1872 1.05 NaN 1 0 Median 1.0951 1.2039 NaN 1 0 Median 1.1608 0.99681 0.69591 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8056000 3849100 4206900 1467800 825190 642610 768280 356830 411450 3696400 1719000 1977400 2123500 948070 1175400 0 0 0 0 0 0 38041 2695 39970 201761;201762;201763;201764;201765 205085;205086 205086 2 VVLPYLVPK FALDGLKQVMAIKSRVVLPYLVPKLTTPPV MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS R V V P K L 0 0 0 0 0 0 0 0 0 0 2 1 0 0 2 0 0 0 1 3 0 0 9 0 1026.6478 Q92616 Q92616 2075 2083 GCN1L1 Translational activator GCN1 yes yes 2 0.013129 45.718 By MS/MS By matching By matching By matching By matching By matching 2 4 1 1 1 2 0.96857 0.89316 16.439 11 Median 0.89404 0.88339 14.233 2 0 Median 0.95275 0.85438 6.7361 4 0 Median 0.9684 1.0744 NaN 1 0 Median 0.9888 0.89316 NaN 1 0 Median 1.3154 1.3878 NaN 1 0 Median 1.1034 0.95224 11.91 2 0 Median 15158000 7406700 7751300 6658400 3191200 3467100 4871100 2426500 2444600 1411700 804800 606930 136990 65787 71206 1568600 682400 886160 511250 235990 275250 38042 3544 39971 201766;201767;201768;201769;201770;201771;201772;201773;201774;201775;201776 205087;205088 205087 2 VVLQELR SIPVLAKWQNSYSIKVVLQELRRLMMSKEN WQNSYSIKVVLQELRRLMMSKENMKLPQPP K V V L R R 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 7 0 855.5178 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3;Q15819;G3V113;H0YBP9 Q15819 117 123 UBE2V1;TMEM189-UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 2 0.0021583 114.02 By MS/MS By MS/MS By MS/MS 3 1 1 1.2192 1.2191 18.941 5 Median NaN NaN NaN 0 0 Median 1.4372 1.2191 19.673 3 1 Median 1.2192 1.233 NaN 1 0 Median 1.1504 0.90551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51934000 22914000 29019000 0 0 0 27485000 11893000 15592000 21827000 9807100 12020000 2621600 1214300 1407300 0 0 0 0 0 0 38043 2973;2809 39972 201777;201778;201779;201780;201781 205089;205090;205091;205092;205093 205089 5 VVLQELRR SIPVLAKWQNSYSIKVVLQELRRLMMSKEN QNSYSIKVVLQELRRLMMSKENMKLPQPPE K V V R R L 0 2 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 8 1 1011.6189 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3;Q15819;G3V113;H0YBP9 Q15819 117 124 UBE2V1;TMEM189-UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 2 0.003263 127.84 By MS/MS By MS/MS By MS/MS 2 2 1 1.2473 1.1411 7.2464 5 Median 1.2216 1.2493 8.872 2 0 Median 1.2853 1.1351 0.74271 2 0 Median NaN NaN NaN 0 0 Median 1.2404 1.1106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 60604000 28449000 32155000 48211000 23149000 25062000 10364000 4475100 5888900 0 0 0 2028800 824670 1204100 0 0 0 0 0 0 38044 2973;2809 39973 201782;201783;201784;201785;201786 205094;205095;205096;205097;205098;205099 205096 6 VVLQPQAGSSQGASSGLSVVK GPGQSPGQRLSVPVKVVLQPQAGSSQGASS AGSSQGASSGLSVVKVLSASEVAALSSPAS K V V V K V 2 0 0 0 0 3 0 3 0 0 2 1 0 0 1 5 0 0 0 4 0 0 21 0 1998.0746 Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8Y808;A0A2R8YFT4 Q9HCK8 400 420 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes no 2 1.2383E-25 124.45 By MS/MS By MS/MS By matching 2 2 1 0.90756 0.86807 8.2015 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82186 0.89506 4.3294 2 0 Median 0.98501 0.907 9.4244 2 0 Median NaN NaN NaN 0 0 Median 0.90756 0.78228 NaN 1 0 Median 19387000 10364000 9022900 0 0 0 0 0 0 17332000 9241400 8090400 1610500 908120 702380 0 0 0 444550 214460 230090 38045 4030 39974 201787;201788;201789;201790;201791 205100;205101;205102;205103;205104 205103 5 VVLSLHHPPDR LAQSDMAKRVANLLRVVLSLHHPPDRTSDS NLLRVVLSLHHPPDRTSDSTPDPQRVPLRL R V V D R T 0 1 0 1 0 0 0 0 2 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1268.699 P52948;H7C3P6 P52948 1757 1767 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes no 3 4.9565E-05 77.593 By MS/MS By MS/MS 1 1 0.84228 0.80223 0.79176 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74623 0.79776 NaN 1 0 Median 0.9507 0.80674 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10850000 5529700 5320500 0 0 0 0 0 0 4473300 2425500 2047800 6376800 3104100 3272600 0 0 0 0 0 0 38046 2462 39975 201792;201793 205105;205106;205107;205108;205109 205109 5 VVLSVSSGGQHTVLLVK AWSPVEMMGKQLENRVVLSVSSGGQHTVLL LSVSSGGQHTVLLVKDKEQS__________ R V V V K D 0 0 0 0 0 1 0 2 1 0 3 1 0 0 0 3 1 0 0 5 0 0 17 0 1722.004 P18754 P18754 400 416 RCC1 Regulator of chromosome condensation yes yes 2;3 2.7167E-31 194.86 By MS/MS By MS/MS By MS/MS By matching 4 2 5 3 1.2327 1.1265 10.97 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1869 1.1256 13.41 4 0 Median 1.3061 1.1784 7.0786 2 0 Median 1.1919 1.1818 13.085 5 0 Median 1.2965 1.0631 8.0458 3 0 Median 453790000 200260000 253530000 0 0 0 0 0 0 323420000 142390000 181030000 75847000 33490000 42357000 47034000 21288000 25746000 7495700 3094300 4401400 38047 2061 39976 201794;201795;201796;201797;201798;201799;201800;201801;201802;201803;201804;201805;201806;201807 205110;205111;205112;205113;205114;205115;205116;205117;205118;205119;205120;205121;205122;205123;205124;205125 205125 16 VVLTAEVSGGSR RTEFGMAIGPENSGKVVLTAEVSGGSRGGR SGKVVLTAEVSGGSRGGR____________ K V V S R G 1 1 0 0 0 0 1 2 0 0 1 0 0 0 0 2 1 0 0 3 0 0 12 0 1173.6354 A0A0J9YVX1;A0A0J9YX61;Q99523 A0A0J9YVX1 46 57 SORT1 Sortilin yes no 2 0.00090694 59.426 By MS/MS By MS/MS 1 1 1.2182 1.1202 20.652 2 Median 1.33 1.2964 NaN 1 0 Median 1.1158 0.96803 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5527800 2275900 3251800 3024500 1156000 1868500 2503200 1119900 1383300 0 0 0 0 0 0 0 0 0 0 0 0 38048 285 39977 201808;201809 205126;205127;205128 205126 3 VVLTDPEAAK LMLDDQRLLLPHWAKVVLTDPEAAKYVHGI PHWAKVVLTDPEAAKYVHGIAVHWYLDFLA K V V A K Y 2 0 0 1 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 2 0 0 10 0 1041.5706 A0A0G2JNZ5;A0A0G2JLB3;P04062;A0A0G2JNZ0 A0A0G2JNZ5 246 255 GBA Glucosylceramidase yes no 2 0.023306 55.549 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38049 281 39978 201810 205129 205129 1 VVLVLAGR ______________________________ KFMKPGKVVLVLAGRYSGRKAVIVKNIDDG K V V G R Y 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 8 0 825.54362 P61353;K7EQQ9;K7ERY7 P61353 10 17 RPL27 60S ribosomal protein L27 yes no 2 0.0023516 132.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 3 3 6 1.2561 1.0717 10.217 18 Median 1.1401 1.0879 1.4835 2 0 Median 1.2739 1.0536 2.3062 3 0 Plateau 1.1263 1.1381 NaN 1 0 Median 1.3508 1.1285 9.4955 3 0 Median 1.2555 1.2838 5.273 3 1 Median 1.2691 1.0356 8.7323 6 0 Median 383290000 171870000 211430000 113530000 53284000 60242000 134580000 57841000 76737000 30793000 14630000 16163000 42994000 17742000 25252000 14956000 6576800 8378700 46445000 21793000 24653000 38050 2557 39979 201811;201812;201813;201814;201815;201816;201817;201818;201819;201820;201821;201822;201823;201824;201825;201826;201827;201828 205130;205131;205132;205133;205134;205135;205136;205137;205138;205139;205140;205141;205142;205143;205144;205145;205146;205147;205148;205149;205150;205151;205152;205153;205154 205131 25 VVLVNNILQNAQER DLDPYVKKLLNARRRVVLVNNILQNAQERL RVVLVNNILQNAQERLRRLNHSVAKETARR R V V E R L 1 1 3 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 3 0 0 14 0 1608.8948 O95295 O95295 92 105 SNAPIN SNARE-associated protein Snapin yes yes 2 6.14E-15 138.25 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1966 1.0692 13.963 4 Median 1.08 1.0373 NaN 1 0 Median 1.3258 1.1021 NaN 1 0 Median 0.96003 0.97255 NaN 1 1 Median 1.6412 1.3435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34013000 17155000 16859000 21413000 10659000 10754000 1303200 470630 832550 10966000 5890400 5075400 331010 134780 196230 0 0 0 0 0 0 38051 1761 39980 201829;201830;201831;201832 205155;205156;205157;205158 205157 4 VVLVSSASDIPVQSHR SVSQTRIAAHPNVQKVVLVSSASDIPVQSH VLVSSASDIPVQSHRTSEISIPADLDKTIT K V V H R T 1 1 0 1 0 1 0 0 1 1 1 0 0 0 1 4 0 0 0 4 0 0 16 0 1692.9159 P46939 P46939 2206 2221 UTRN Utrophin yes yes 3 4.1295E-08 85.16 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.93251 0.80652 26.8 5 Median 0.7409 0.70938 35.006 2 2 Median 0.98847 0.80652 NaN 1 0 Median 0.70516 0.76162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3816 1.155 NaN 1 0 Median 40124000 20063000 20061000 25214000 13064000 12150000 9277500 4248700 5028800 4460100 2264800 2195300 0 0 0 0 0 0 1172200 485660 686500 38052 2349 39981 201833;201834;201835;201836;201837 205159;205160;205161;205162;205163 205159 4 VVLVTGAGAGLGR ______________________________ GRVVLVTGAGAGLGRAYALAFAERGALVVV R V V G R A 2 1 0 0 0 0 0 4 0 0 2 0 0 0 0 0 1 0 0 3 0 0 13 0 1168.6928 A0A2R8YD50;P51659;E7ER27;A0A2R8YDT8;A0A2R8YF45;A0A2R8YEG2 A0A2R8YD50 11 23 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes no 2 4.6568E-10 174.41 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 2 3 2 1.4582 1.2342 36.647 17 Median 1.0976 1.0238 43.481 5 3 Median 1.6293 1.3859 24.076 5 0 Median 1.118 1.1054 15.589 2 0 Median 1.6085 1.3641 6.0308 3 0 Plateau NaN NaN NaN 0 0 Median 1.695 1.3867 51.85 2 1 Median 381470000 170190000 211280000 234470000 109250000 125230000 43141000 17191000 25950000 65734000 29324000 36411000 33246000 12449000 20797000 0 0 0 4877700 1984400 2893300 38053 393 39982 201838;201839;201840;201841;201842;201843;201844;201845;201846;201847;201848;201849;201850;201851;201852;201853;201854 205164;205165;205166;205167;205168;205169;205170;205171;205172;205173;205174;205175;205176;205177;205178;205179;205180;205181;205182;205183;205184;205185;205186;205187;205188 205175 23 VVLVTSGGTK VMARFAARLGAQGRRVVLVTSGGTKVPLEA AQGRRVVLVTSGGTKVPLEARPVRFLDNFS R V V T K V 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 2 0 0 3 0 0 10 0 959.56515 Q9HAB8;Q5VVM3 Q9HAB8 37 46 PPCS Phosphopantothenate--cysteine ligase yes no 2 0.0037749 55.549 By MS/MS By MS/MS 1 1 1.221 1.117 3.3314 2 Median 1.1566 1.1436 NaN 1 0 Median 1.289 1.091 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2406800 1151900 1254900 1040800 541680 499090 1366100 610240 755830 0 0 0 0 0 0 0 0 0 0 0 0 38054 4007 39983 201855;201856 205189;205190 205189 2 VVLYVLNR PSREGLKQVSTLGERVVLYVLNRIIYRKQE VSTLGERVVLYVLNRIIYRKQEMERNEIPF R V V N R I 0 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 3 0 0 8 0 974.5913 D6RB01;Q9Y6X4;D6RC41;D6R953 D6RB01 114 121 FAM169A Soluble lamin-associated protein of 75 kDa yes no 2 0.0034066 98.133 By matching By MS/MS By matching By MS/MS By matching 2 1 2 1 1 1.3972 1.2173 7.0966 7 Median NaN NaN NaN 0 0 Median 1.4494 1.2567 4.5098 2 0 Median 1.0015 1.0641 NaN 1 0 Median 1.3897 1.1766 3.6452 2 0 Median 1.225 1.3044 NaN 1 0 Median 1.5124 1.2309 NaN 1 0 Median 16661000 7522600 9138700 0 0 0 4084200 1667400 2416800 9119900 4367900 4752000 602280 232920 369360 1771500 826490 945050 1083500 427910 655540 38055 814 39984 201857;201858;201859;201860;201861;201862;201863 205191;205192;205193 205191 3 VVMNSAQASIK TVVKQNADVALQNLRVVMNSAQASIKQLVS QNLRVVMNSAQASIKQLVSGAETLNLVAEI R V V I K Q 2 0 1 0 0 1 0 0 0 1 0 1 1 0 0 2 0 0 0 2 0 0 11 0 1146.6067 H7C331;Q96C92 H7C331 125 135 SDCCAG3 Serologically defined colon cancer antigen 3 yes no 2 0.014119 37.191 By MS/MS 1 0.88137 0.88376 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88137 0.88376 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2150600 1368800 781850 0 0 0 0 0 0 2150600 1368800 781850 0 0 0 0 0 0 0 0 0 38056 1264 39985 201864 205194;205195 205194 2 VVNAAIATASSASGEPEEPVVPSTTR LFQAKDEAEMSSWLRVVNAAIATASSASGE ASGEPEEPVVPSTTRGMTRAMTMPPVSPVG R V V T R G 5 1 1 0 0 0 3 1 0 1 0 0 0 0 3 4 3 0 0 4 0 0 26 0 2539.2766 O15020;A4QPE4 O15020 2322 2347 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes no 3 4.0714E-15 62.582 By MS/MS 1 0.52602 0.57393 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52602 0.57393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11336000 6725100 4610600 0 0 0 0 0 0 11336000 6725100 4610600 0 0 0 0 0 0 0 0 0 38057 1512 39986 201865 205196 205196 1 VVNAVLTQIDQIKR RNACRAGTEPSDAIRVVNAVLTQIDQIKRH RVVNAVLTQIDQIKRHSNVVILTTSNITEK R V V K R H 1 1 1 1 0 2 0 0 0 2 1 1 0 0 0 0 1 0 0 3 0 0 14 1 1595.9359 Q15645 Q15645 276 289 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2;3 1.5593E-07 138.71 By MS/MS By matching By MS/MS 3 2 1 1.3059 1.3008 12.718 5 Median 1.3059 1.3008 10.949 3 0 Median 1.3382 1.2343 16.27 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22229000 10414000 11815000 21720000 10198000 11522000 508990 215870 293120 0 0 0 0 0 0 0 0 0 0 0 0 38058 2960 39987 201866;201867;201868;201869;201870;201871 205197;205198;205199;205200;205201 205198 5 VVNDEEVVR STTKREEEHKLVKSKVVNDEEVVRVPLAFA KLVKSKVVNDEEVVRVPLAFAMVKLMQSLP K V V V R V 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 1057.5404 O75691 O75691 1812 1820 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0036742 63.48 By MS/MS By MS/MS 1 2 1.0995 1.1906 10.997 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0729 1.1906 NaN 1 0 Median 1.1726 1.0007 6.383 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3834300 1860500 1973700 0 0 0 0 0 0 1824300 943620 880680 2010000 916910 1093100 0 0 0 0 0 0 38059 1691 39988 201872;201873;201874 205202;205203;205204 205204 3 VVNEINIEDLCLTK KDSLINLKIQKENPKVVNEINIEDLCLTKA KVVNEINIEDLCLTKAAYCRCWRSKTFPAC K V V T K A 0 0 2 1 1 0 2 0 0 2 2 1 0 0 0 0 1 0 0 2 0 0 14 0 1658.8549 Q8N5K1;D6RCF4 Q8N5K1 82 95 CISD2 CDGSH iron-sulfur domain-containing protein 2 yes no 2 0.0015468 48.004 By matching By MS/MS By matching 1 1 1 1.4489 1.228 21.232 3 Median NaN NaN NaN 0 0 Median 1.4489 1.228 NaN 1 0 Median 1.5823 1.5584 NaN 1 0 Median 1.1436 1.0204 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5846700 2756900 3089800 0 0 0 709790 298170 411620 2701900 1116400 1585500 2435000 1342300 1092700 0 0 0 0 0 0 38060 3379 39989 201875;201876;201877 205205;205206 205206 2 VVNGKVEYFLK AEPEEFVVEKVLDRRVVNGKVEYFLKWKGF LDRRVVNGKVEYFLKWKGFTDADNTWEPEE R V V L K W 0 0 1 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 1 3 0 0 11 1 1294.7285 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 40 50 CBX3 Chromobox protein homolog 3 yes no 2;3 0.00067213 76.827 By MS/MS By MS/MS By MS/MS 2 2 5 1.073 1.1348 6.1408 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1493 1.1468 9.6114 2 0 Median 1.2076 1.0876 6.0157 2 0 Median 1.031 1.167 5.9154 5 0 Median NaN NaN NaN 0 0 Median 122300000 58865000 63430000 0 0 0 0 0 0 11730000 5415500 6314900 9419000 4961900 4457100 101150000 48488000 52658000 0 0 0 38061 2795 39990 201878;201879;201880;201881;201882;201883;201884;201885;201886 205207;205208;205209;205210;205211;205212;205213;205214;205215;205216;205217;205218;205219;205220 205213 14 VVNGPEILNK LARQIGKMLNAREPKVVNGPEILNKYVGES AREPKVVNGPEILNKYVGESEANIRKLFAD K V V N K Y 0 0 2 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 0 1081.6132 I3L0N3;P46459 I3L0N3 279 288 NSF Vesicle-fusing ATPase yes no 2 0.007999 60.436 By MS/MS By MS/MS By matching 1 1 1 0.74187 0.78642 16.834 3 Median 0.72677 0.66823 NaN 1 1 Median 1.0568 0.93566 NaN 1 0 Median 0.74187 0.78642 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12388000 6649600 5738100 7232700 3834300 3398300 1928300 1034300 893970 3226800 1781000 1445800 0 0 0 0 0 0 0 0 0 38062 1272 39991 201887;201888;201889 205221;205222;205223 205221 3 VVNHSPQPQNVVFDVQIPK STITSRVANTVIQTKVVNHSPQPQNVVFDV SPQPQNVVFDVQIPKGAFISNFSMTVDGTT K V V P K G 0 0 2 1 0 3 0 0 1 1 0 1 0 1 3 1 0 0 0 5 0 0 19 0 2144.1378 CON__Q9TRI1 CON__Q9TRI1 94 112 yes yes 3 0.029874 22.01 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4076700 4076700 0 4076700 4076700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 38063 793 39992 201890 205224 205224 1 VVNIIPVIAK SLRPLDLEFMKHLSKVVNIIPVIAKADTMT KHLSKVVNIIPVIAKADTMTLEEKSEFKQR K V V A K A 1 0 1 0 0 0 0 0 0 3 0 1 0 0 1 0 0 0 0 3 0 0 10 0 1064.6958 B1AHR1;A0A2R8Y4H2;Q9UH03 B1AHR1 135 144 SEPT3 Neuronal-specific septin-3 yes no 2 0.0051941 50.703 By MS/MS By matching 1 1 1.0339 0.98671 40.433 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6887 0.74135 NaN 1 0 Median 1.5521 1.3133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3745800 2093400 1652400 0 0 0 0 0 0 3447400 1964500 1482900 298400 128920 169480 0 0 0 0 0 0 38064 363 39993 201891;201892 205225;205226 205225 2 VVNIVPVIAK SLRPLDIEFMKRLSKVVNIVPVIAKADTLT KRLSKVVNIVPVIAKADTLTLEERVHFKQR K V V A K A 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 4 0 0 10 0 1050.6801 Q9UHD8;K7EL40;K7EK18 Q9UHD8 436 445 SEPT9 Septin-9 yes no 2 0.00056975 73.26 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 6 4 2 4 1.1161 1.0217 13.07 19 Median 0.80138 0.77351 15.368 3 0 Median NaN NaN NaN 0 0 Median 0.9825 0.97173 11.182 6 0 Median 1.2902 1.1009 4.1254 4 0 Median 0.92151 0.91866 3.8675 2 0 Median 1.2646 1.0619 5.1339 4 0 Median 193880000 96886000 96995000 9168000 5125100 4042900 0 0 0 146990000 74762000 72229000 27995000 12031000 15964000 5893800 3206100 2687800 3832500 1761100 2071400 38065 4276 39994 201893;201894;201895;201896;201897;201898;201899;201900;201901;201902;201903;201904;201905;201906;201907;201908;201909;201910;201911 205227;205228;205229;205230;205231;205232;205233;205234;205235;205236;205237;205238;205239;205240;205241;205242;205243;205244 205230 18 VVNLGVLAQK RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL PQQSKVVNLGVLAQKSDFCLKLEEGLVNNK K V V Q K S 1 0 1 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 3 0 0 10 0 1039.639 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 759 768 WDR36 WD repeat-containing protein 36 yes no 2 0.00047247 112.17 By matching By MS/MS By MS/MS By matching By matching 1 2 3 2 1 1.3279 1.2999 21.142 9 Median 1.3279 1.3184 NaN 1 0 Median 1.535 1.3356 14.015 2 0 Median 1.2196 1.2999 11.936 3 0 Median 1.3831 1.2216 19.166 2 0 Median NaN NaN NaN 0 0 Median 0.89319 0.76633 NaN 1 0 Median 53717000 22979000 30738000 3664600 1667500 1997200 6538300 2824400 3713900 39902000 17091000 22811000 2649100 957250 1691800 0 0 0 962980 438450 524540 38066 188 39995 201912;201913;201914;201915;201916;201917;201918;201919;201920 205245;205246;205247 205246 3 VVNLHPLKK KTQPHHSTPTKGGWKVVNLHPLKKQPPSFP TKGGWKVVNLHPLKKQPPSFPGAAEERACQ K V V K K Q 0 0 1 0 0 0 0 0 1 0 2 2 0 0 1 0 0 0 0 2 0 0 9 1 1046.66 Q12789 Q12789 522 530 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.045218 35.88 By MS/MS By matching 1 1 0.87889 0.90624 15.627 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70787 0.81144 NaN 1 0 Median 1.0912 1.0121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1666900 923600 743290 0 0 0 0 0 0 1556900 873660 683240 110000 49940 60058 0 0 0 0 0 0 38067 2758 39996 201921;201922 205248 205248 1 VVNLQYSEVQDR TRFTGATGRAFLFNKVVNLQYSEVQDRVML FNKVVNLQYSEVQDRVMLTGRHMVRDVSCK K V V D R V 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 1 0 0 1 3 0 0 12 0 1448.726 P62699 P62699 48 59 YPEL5 Protein yippee-like 5 yes yes 2 0.00012285 125.75 By MS/MS By MS/MS 1 1 0.6872 0.62529 15.216 2 Median 0.57627 0.56151 NaN 1 1 Median 0.81949 0.69632 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14122000 7590400 6531300 4977200 3532400 1444800 9144500 4058000 5086500 0 0 0 0 0 0 0 0 0 0 0 0 38068 2592 39997 201923;201924 205249;205250 205250 2 VVNMNQQSDTADLLGGYKPVDHK STIQYLAHITGHRLRVVNMNQQSDTADLLG DTADLLGGYKPVDHKLIWLPLREAFEELFA R V V H K L 1 0 2 3 0 2 0 2 1 0 2 2 1 0 1 1 1 0 1 3 0 0 23 1 2528.2329 Q9NU22;Q5T795 Q9NU22 700 722 MDN1 Midasin yes no 3;4 2.0432E-12 61.222 By matching By MS/MS 1 2 0.83806 0.91441 8.6872 3 Median NaN NaN NaN 0 0 Median 0.84467 0.80468 NaN 1 0 Median 0.82321 0.93194 2.6858 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57276000 30423000 26853000 0 0 0 5032500 2199400 2833100 52243000 28223000 24020000 0 0 0 0 0 0 0 0 0 38069 4112 39998 201925;201926;201927 205251;205252;205253;205254 205252 4 VVNPLFEK VAPAPAVVKKQEAKKVVNPLFEKRPKNFGI KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K V V E K R 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 8 0 944.53312 P62424;Q5T8U3 P62424 27 34 RPL7A 60S ribosomal protein L7a yes no 2 0.0055542 75.109 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 0.95724 0.8825 8.9394 8 Median 0.87248 0.78934 NaN 1 0 Median 0.9525 0.79786 NaN 1 0 Median 0.92486 0.88968 NaN 1 0 Median 1.0447 0.87538 NaN 1 0 Median 0.96506 0.97677 1.6438 2 0 Median 1.0513 0.86254 10.798 2 0 Median 203140000 104530000 98602000 87770000 46432000 41338000 32457000 16748000 15709000 9129500 4409100 4720400 11022000 5449700 5572100 49507000 25344000 24164000 13249000 6150500 7098400 38070 2589 39999 201928;201929;201930;201931;201932;201933;201934;201935 205255;205256;205257;205258;205259;205260;205261;205262;205263;205264;205265;205266;205267;205268 205264 14 VVNTDHGSPEQLQIPVTDSGR VEMAAKFPSGSQRARVVNTDHGSPEQLQIP GSPEQLQIPVTDSGRHILEDSCAELGESKE R V V G R H 0 1 1 2 0 2 1 2 1 1 1 0 0 0 2 2 2 0 0 3 0 0 21 0 2248.1084 Q6IQ49 Q6IQ49 271 291 SDE2 Protein SDE2 homolog yes yes 3 8.5394E-19 109.42 By matching By MS/MS By MS/MS 1 1 2 0.78827 0.73116 13.235 4 Median 0.73875 0.73715 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62833 0.6182 NaN 1 0 Median 0.91302 0.78719 11.597 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26345000 14931000 11414000 2341800 1203100 1138700 0 0 0 14116000 8570600 5545600 9886700 5157100 4729600 0 0 0 0 0 0 38071 3140 40000 201936;201937;201938;201939 205269;205270;205271;205272;205273 205269 5 VVNTSDPDMR MMMVLPLLIFVLLPKVVNTSDPDMRREMEQ VLLPKVVNTSDPDMRREMEQSMNMLNSNHE K V V M R R 0 1 1 2 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 2 0 0 10 0 1132.5183 Q9NPA0;H0YDT8;H0YDX2 Q9NPA0 182 191 EMC7 ER membrane protein complex subunit 7 yes no 2 0.00083236 70.919 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.98388 0.92907 14.978 4 Median 0.91416 0.86237 NaN 1 0 Median 0.91861 0.78258 NaN 1 1 Median 1.0538 1.0009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3254 1.0943 NaN 1 0 Median 8004200 3727600 4276700 3835800 1728600 2107200 1008500 508000 500510 2944500 1406700 1537800 0 0 0 0 0 0 215390 84231 131160 38072 4044 40001 201940;201941;201942;201943 205274;205275;205276;205277;205278 205274 5 VVNTYGPQTRPEGIPGSGHKPNSMLR FTPYPGFKSHVKVSRVVNTYGPQTRPEGIP EGIPGSGHKPNSMLRDCGNQAVEERLQNIE R V V L R D 0 2 2 0 0 1 1 4 1 1 1 1 1 0 4 2 2 0 1 2 0 0 26 2 2791.4188 Q9NS73;S4R3P6;S4R3N2;A0A087X1L0;S4R2X9 Q9NS73 216 241 MBIP MAP3K12-binding inhibitory protein 1 yes no 5 0.056413 9.2092 By MS/MS 1 0.5467 0.70135 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5467 0.70135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11587000 7286900 4300200 0 0 0 0 0 0 11587000 7286900 4300200 0 0 0 0 0 0 0 0 0 38073 4097 40002 201944 205279 205279 1 VVNVANVGAVPSGQDNIHR IAAPQNFTPSVIFQKVVNVANVGAVPSGQD ANVGAVPSGQDNIHRFAAKTVHSGSLMLVT K V V H R F 2 1 3 1 0 1 0 2 1 1 0 0 0 0 1 1 0 0 0 5 0 0 19 0 1945.013 O00203;H0YBD0 O00203 1026 1044 AP3B1 AP-3 complex subunit beta-1 yes no 3 1.8805E-13 100.39 By MS/MS By MS/MS By MS/MS By matching By matching 4 1 2 1 1 0.82938 0.74473 52.375 9 Median 0.9879 0.94551 35.848 4 0 Linear 0.89309 0.74473 NaN 1 0 Median 1.5952 1.742 24.924 2 1 Median 0.80208 0.68088 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0416 0.85597 NaN 1 0 Median 74269000 33845000 40424000 36667000 18877000 17790000 14088000 7106400 6981600 17161000 5099900 12061000 5677000 2496400 3180600 0 0 0 676120 265850 410270 38074 1447 40003 201945;201946;201947;201948;201949;201950;201951;201952;201953 205280;205281;205282;205283;205284;205285;205286 205280 7 VVNVELPIEANLVWQLGK KKVDQPPEAKKPKIKVVNVELPIEANLVWQ VELPIEANLVWQLGKDLLNMYIETEGKMIM K V V G K D 1 0 2 0 0 1 2 1 0 1 3 1 0 0 1 0 0 1 0 4 0 0 18 0 2020.1357 Q92598;A0A0A0MSM0 Q92598 591 608 HSPH1 Heat shock protein 105 kDa yes no 2 1.0987E-05 53.252 By MS/MS 1 0.75832 0.66936 NaN 1 Median NaN NaN NaN 0 0 Median 0.75832 0.66936 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2400800 1342200 1058600 0 0 0 2400800 1342200 1058600 0 0 0 0 0 0 0 0 0 0 0 0 38075 3541 40004 201954 205287;205288 205288 2 VVNVSSIMSVR DVCTELLPLIKPQGRVVNVSSIMSVRALKS PQGRVVNVSSIMSVRALKSCSPELQQKFRS R V V V R A 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 3 0 0 0 4 0 0 11 0 1189.6489 P16152 P16152 135 145 CBR1 Carbonyl reductase [NADPH] 1 yes yes 2 0.00011638 134.25 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 1 1.1608 1.0082 10.651 7 Median 1.0476 0.97746 14.777 2 0 Median 1.1925 1.0082 8.4793 3 1 Median 1.0103 0.9991 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1911 1.1812 NaN 1 0 Median NaN NaN NaN 0 0 Median 299330000 148430000 150900000 263310000 131100000 132220000 28006000 13708000 14297000 4032400 1936600 2095800 0 0 0 3978400 1687600 2290800 0 0 0 38076 2025 40005;40006 201955;201956;201957;201958;201959;201960;201961;201962 205289;205290;205291;205292;205293;205294;205295;205296;205297;205298 205291 810 10 VVPEMTEILK IFQVADYGIVADLFKVVPEMTEILKKK___ ADLFKVVPEMTEILKKK_____________ K V V L K K 0 0 0 0 0 0 2 0 0 1 1 1 1 0 1 0 1 0 0 2 0 0 10 0 1157.6366 P13804;H0YK49;H0YL83 P13804 322 331 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes no 2 0.00095511 69.825 By MS/MS By MS/MS By matching 2 1 1 1.2145 1.0621 15.654 4 Median 0.99444 0.90118 18.202 2 1 Median 1.3146 1.1007 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3075 1.1028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 178610000 80786000 97828000 138890000 65927000 72962000 37297000 13834000 23463000 0 0 0 2427100 1024300 1402800 0 0 0 0 0 0 38077 1996 40007;40008 201963;201964;201965;201966 205299;205300;205301;205302;205303 205300 790 5 VVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSR QLCLEAYYDNTIFHRVVPGFIVQGGDPTGT ESIYGAPFKDEFHSRLRFNRRGLVAMANAG R V V S R L 1 1 0 2 0 1 2 8 1 2 0 1 0 3 3 3 2 0 1 3 0 0 34 1 3464.6637 Q6UX04;D6REK3 Q6UX04 57 90 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes no 4 0.021963 13.343 By matching By MS/MS By matching 1 1 1 0.67999 0.62348 29.166 3 Median 0.47187 0.47802 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76506 0.85597 NaN 1 0 Median 0.67999 0.62348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8519400 5056600 3462800 2202900 1636700 566230 0 0 0 6092600 3282000 2810600 223840 137870 85970 0 0 0 0 0 0 38078 3189 40009 201967;201968;201969 205304;205305 205304 2 VVPGYGHAVLR EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP NSGRVVPGYGHAVLRKTDPRYTCQREFALK R V V L R K 1 1 0 0 0 0 0 2 1 0 1 0 0 0 1 0 0 0 1 3 0 0 11 0 1166.656 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 341 351 CS Citrate synthase, mitochondrial;Citrate synthase yes no 2 0.00011164 122.74 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1 1.0885 0.91959 18.734 11 Median 0.86914 0.81062 1.2413 3 0 Plateau 1.1738 1.0154 5.3664 3 0 Plateau 0.86891 0.89256 2.3435 2 0 Median 1.2592 1.0941 22.425 2 0 Median 1.4333 1.4456 NaN 1 0 Median NaN NaN NaN 0 0 Median 219710000 107320000 112390000 55924000 29236000 26688000 37900000 17145000 20755000 40648000 21229000 19419000 82486000 38680000 43806000 2752800 1031100 1721700 0 0 0 38079 594 40010 201970;201971;201972;201973;201974;201975;201976;201977;201978;201979;201980 205306;205307;205308;205309;205310;205311;205312;205313;205314;205315;205316;205317;205318;205319 205310 14 VVPGYGHAVLRK EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP SGRVVPGYGHAVLRKTDPRYTCQREFALKH R V V R K T 1 1 0 0 0 0 0 2 1 0 1 1 0 0 1 0 0 0 1 3 0 0 12 1 1294.751 O75390;B4DJV2;A0A0C4DGI3;H0YIC4 O75390 341 352 CS Citrate synthase, mitochondrial;Citrate synthase yes no 3 0.001459 39.266 By MS/MS By matching By matching By matching 1 1 1 1 1.3362 1.2299 11.187 4 Median 1.024 1.0228 NaN 1 0 Median 1.3878 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.374 1.3218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2994 1.1967 NaN 1 0 Median 7573400 3219400 4354000 4621900 2064100 2557800 504730 212180 292550 0 0 0 2058100 811840 1246200 0 0 0 388710 131280 257430 38080 594 40011 201981;201982;201983;201984 205320;205321 205320 2 VVPIASLTPYQSK AGPSLSHTSGGTQSKVVPIASLTPYQSKWT SKVVPIASLTPYQSKWTICARVTNKSQIRT K V V S K W 1 0 0 0 0 1 0 0 0 1 1 1 0 0 2 2 1 0 1 2 0 0 13 0 1401.7868 P27694 P27694 184 196 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 4.8234E-07 116.77 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 2 2 1 2 1 0.93172 0.86397 16.906 9 Median 0.75187 0.70219 NaN 1 0 Median 0.95807 0.83794 5.7575 2 0 Median 1.0016 0.99527 32.795 2 0 Median 0.84529 0.71994 NaN 1 1 Median 0.88868 0.8818 2.4644 2 0 Median 1.0282 0.86397 NaN 1 0 Median 73170000 39125000 34045000 21143000 11676000 9466800 2868800 1473000 1395800 35113000 18657000 16456000 3026600 1856700 1169800 9482100 4863400 4618800 1536600 598580 938050 38081 2156 40012 201985;201986;201987;201988;201989;201990;201991;201992;201993 205322;205323;205324;205325;205326;205327;205328;205329 205327 8 VVPLHSLK QYPSMLLLTADHDDRVVPLHSLKFIATLQY TADHDDRVVPLHSLKFIATLQYIVGRSRKQ R V V L K F 0 0 0 0 0 0 0 0 1 0 2 1 0 0 1 1 0 0 0 2 0 0 8 0 891.55419 A0A499FJL1;P48147 A0A499FJL1 578 585 PREP Prolyl endopeptidase yes no 2 0.011256 57.281 By matching By MS/MS 1 2 1.0558 0.9321 8.9797 3 Median 0.80317 0.81457 NaN 1 0 Median 1.0867 0.94874 2.5027 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5059400 2460600 2598900 425830 212550 213280 4633600 2248000 2385600 0 0 0 0 0 0 0 0 0 0 0 0 38082 478 40013 201994;201995;201996 205330 205330 1 VVPLVQMGETDANVAK ALHFCRAVCRRAERRVVPLVQMGETDANVA VPLVQMGETDANVAKFLNRLSDYLFTLARY R V V A K F 2 0 1 1 0 1 1 1 0 0 1 1 1 0 1 0 1 0 0 4 0 0 16 0 1669.8709 Q96EY8;S4R3P5 Q96EY8 196 211 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes no 2 1.0759E-09 100.93 By MS/MS By matching By MS/MS 1 1 1 0.96331 0.89753 47.77 3 Median 0.96331 0.89753 NaN 1 0 Median 2.2001 1.8805 NaN 1 0 Median 0.82092 0.76948 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30909000 15758000 15151000 15123000 7799600 7323600 878940 237960 640980 14907000 7720800 7186100 0 0 0 0 0 0 0 0 0 38083 3645 40014 201997;201998;201999 205331;205332;205333;205334 205332 4 VVPPLDEDGR YKPSFPKWARQDFSKVVPPLDEDGRSLLSQ QDFSKVVPPLDEDGRSLLSQMLHYDPNKRI K V V G R S 0 1 0 2 0 0 1 1 0 0 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1095.556 G3V5T9;P24941;E7ESI2 G3V5T9 299 308 CDK2 Cyclin-dependent kinase 2 yes no 2 0.00041321 76.064 By MS/MS 1 0.67234 0.56089 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67234 0.56089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9037700 4433000 4604700 0 0 0 0 0 0 0 0 0 9037700 4433000 4604700 0 0 0 0 0 0 38084 1120 40015 202000 205335;205336;205337 205337 3 VVPQQITHTSPR SHATAVTTSNIPVAKVVPQQITHTSPRIQP VAKVVPQQITHTSPRIQPDYPAERSSLIPI K V V P R I 0 1 0 0 0 2 0 0 1 1 0 0 0 0 2 1 2 0 0 2 0 0 12 0 1361.7415 A0A2R8YDB8;H7BXF5;Q9H0E3 A0A2R8YDB8 407 418 SAP130 Histone deacetylase complex subunit SAP130 yes no 3 0.0010243 45.257 By matching By MS/MS By MS/MS 1 2 1 0.94523 0.91469 12.499 4 Median NaN NaN NaN 0 0 Median 1.3208 1.1454 NaN 1 0 Median 0.81011 0.89022 4.2707 2 2 Median 1.0699 0.91188 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9524300 5411200 4113100 0 0 0 1322000 610050 711990 6975200 4178300 2796900 1227000 622850 604180 0 0 0 0 0 0 38085 395 40016 202001;202002;202003;202004 205338;205339;205340;205341 205340 4 VVPQTVMATVPVK AGPQIRVPATATQTKVVPQTVMATVPVKAQ TKVVPQTVMATVPVKAQTTAATVQRPGPGQ K V V V K A 1 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 2 0 0 5 0 0 13 0 1367.7847 Q6P4R8;E9PQ59 Q6P4R8 847 859 NFRKB Nuclear factor related to kappa-B-binding protein yes no 2 0.00068206 67.726 By MS/MS By matching 1 2 0.75263 0.80851 12.544 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75263 0.80851 NaN 1 0 Median 0.78202 0.6807 10.832 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8614900 5078700 3536200 0 0 0 0 0 0 7184700 4265700 2919100 1430200 813020 617180 0 0 0 0 0 0 38086 3159 40017 202005;202006;202007 205342;205343 205342 2 VVPSDLYPLVLGFLR ______________________________ VVPSDLYPLVLGFLRDNQLSEVANKFAKAT R V V L R D 0 1 0 1 0 0 0 1 0 0 4 0 0 1 2 1 0 0 1 3 0 0 15 0 1686.9709 A0A0A0MRM9;Q14978;S4R402;S4R349 A0A0A0MRM9 8 22 NOLC1 Nucleolar and coiled-body phosphoprotein 1 no no 2;3 4.5547E-06 87.298 By matching By MS/MS By matching 4 4 1 0.86456 0.90356 29.463 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83468 0.8796 42.419 4 0 Median NaN NaN NaN 0 0 Median 0.89259 0.92997 2.3368 4 0 Median 0.89086 0.71009 NaN 1 0 Median 8385900 4431700 3954100 0 0 0 0 0 0 2331800 1274200 1057600 0 0 0 6006400 3126200 2880200 47584 31240 16344 38087 165 40018 202008;202009;202010;202011;202012;202013;202014;202015;202016 205344;205345;205346 205346 3 VVPSFLPVDQGGSLVGR MLHPWNNEGAPPEDKVVPSFLPVDQGGSLV PSFLPVDQGGSLVGRNGVGGMAKEATMKGS K V V G R N 0 1 0 1 0 1 0 3 0 0 2 0 0 1 2 2 0 0 0 4 0 0 17 0 1725.9414 Q14126 Q14126 668 684 DSG2 Desmoglein-2 yes yes 2 0.00042819 71.241 By matching By matching By MS/MS 1 1 4 0.62122 0.5994 17.226 6 Median 0.72582 0.73299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61545 0.54542 NaN 1 0 Median 0.57544 0.59309 18.07 4 0 Median NaN NaN NaN 0 0 Median 10030000 5986000 4044000 539330 333950 205390 0 0 0 0 0 0 163100 90205 72897 9327600 5561800 3765800 0 0 0 38088 2855 40019 202017;202018;202019;202020;202021;202022 205347;205348 205348 1 VVPTTDHIDTEK TDYKGTLLGESLKLKVVPTTDHIDTEKLKA KLKVVPTTDHIDTEKLKAREQIKFFEEVLL K V V E K L 0 0 0 2 0 0 1 0 1 1 0 1 0 0 1 0 3 0 0 2 0 0 12 0 1353.6776 O75663 O75663 129 140 TIPRL TIP41-like protein yes yes 3 0.00081999 47.189 By matching By MS/MS By matching 1 1 1 1.1443 1.0726 5.179 3 Plateau 1.0071 1.0024 NaN 1 0 Median 1.2768 1.076 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1443 0.97278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3637600 1371700 2265900 897690 470140 427550 2272200 650430 1621700 0 0 0 467730 251080 216650 0 0 0 0 0 0 38089 1689 40020 202023;202024;202025 205349 205349 1 VVQEENQHMQMTIQALQDELR KDEASKITIWKEQYRVVQEENQHMQMTIQA QHMQMTIQALQDELRIQRDLNQLFQQDSSS R V V L R I 1 1 1 1 0 5 3 0 1 1 2 0 2 0 0 0 1 0 0 2 0 0 21 0 2539.2159 X6RLX0;Q8IUD2;G8JLD3;X6RM00;K7EPP6;A0A0U1RQM4 X6RLX0 217 237 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes no 3 3.2087E-12 74.662 By matching By MS/MS By matching 1 2 1 1.0129 1.0182 28.157 4 Median NaN NaN NaN 0 0 Median 0.90471 0.80073 NaN 1 0 Median 1.1375 1.307 2.1224 2 0 Median 0.92817 0.80518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6648600 2435500 4213100 0 0 0 578310 314660 263650 5697300 1950700 3746600 372980 170140 202850 0 0 0 0 0 0 38090 3311 40021 202026;202027;202028;202029 205350;205351 205351 2 VVQETVLVEER ETEPTVHHLPLSTEKVVQETVLVEERRVVH STEKVVQETVLVEERRVVHASGDASYSAGD K V V E R R 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 1 0 0 4 0 0 11 0 1299.7034 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968;A0A0J9YY18;A0A0J9YW31 A0A0A0MRA8 682 692 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 2 0.00030385 111.61 By MS/MS 1 0.40008 0.38499 NaN 1 Median 0.40008 0.38499 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22092000 16924000 5168000 22092000 16924000 5168000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38091 156 40022 202030 205352 205352 1 VVQGDIGEANEDVTQIVEILHSGPSK KIEKLARDILIDPIRVVQGDIGEANEDVTQ DVTQIVEILHSGPSKWNWLTRRLVEFTSSG R V V S K W 1 0 1 2 0 2 3 3 1 3 1 1 0 0 1 2 1 0 0 4 0 0 26 0 2733.3821 Q86XP3;A0A0A0MSJ0 Q86XP3 459 484 DDX42 ATP-dependent RNA helicase DDX42 yes no 3 3.7009E-07 48.984 By matching By MS/MS 1 2 0.77585 0.81454 5.2407 3 Median 0.81511 0.81454 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73651 0.79592 7.1668 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8442900 4703800 3739100 575210 327720 247490 0 0 0 7867700 4376000 3491600 0 0 0 0 0 0 0 0 0 38092 3302 40023 202031;202032;202033 205353;205354 205354 2 VVQGSPEVPGITVR VALALQQALGQELARVVQGSPEVPGITVRV RVVQGSPEVPGITVRVLQALATLLSSPHGG R V V V R V 0 1 0 0 0 1 1 2 0 1 0 0 0 0 2 1 1 0 0 4 0 0 14 0 1436.7987 Q8N201 Q8N201 1391 1404 INTS1 Integrator complex subunit 1 yes yes 2 4.2641E-08 104.82 By MS/MS By matching 1 1 0.86215 0.84472 2.4051 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76151 0.83047 NaN 1 0 Median 0.97609 0.85921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12534000 6525500 6008900 0 0 0 0 0 0 11840000 6159600 5680000 694820 365930 328890 0 0 0 0 0 0 38093 3360 40024 202034;202035 205355;205356 205356 2 VVQHFVHCIETHGR IFMNNYHLCNEISERVVQHFVHCIETHGRH RVVQHFVHCIETHGRHVEYLRFLQTIVKAD R V V G R H 0 1 0 0 1 1 1 1 3 1 0 0 0 1 0 0 1 0 0 3 0 0 14 0 1717.8471 Q14571;A0A3B3IRP0;A0A3B3IU13;A0A3B3IU05;A0A3B3ITQ1;A0A3B3ITU8;A0A3B3IU04;A0A3F2YNW8;Q14643 Q14571 1292 1305 ITPR2;ITPR1 Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1 no no 4 0.0002154 59.607 By MS/MS 1 1.3485 1.0992 NaN 1 Median NaN NaN NaN 0 0 Median 1.3485 1.0992 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9438400 3339900 6098400 0 0 0 9438400 3339900 6098400 0 0 0 0 0 0 0 0 0 0 0 0 38094 2882;414 40025 202036 205357 205357 1 VVQHSNVVINLIGR LFLEWDARDKDSIRRVVQHSNVVINLIGRD RVVQHSNVVINLIGRDWETKNFDFEDVFVK R V V G R D 0 1 2 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 4 0 0 14 0 1546.8944 A0A3B3ISG8;Q16795 A0A3B3ISG8 119 132 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2;3 4.5013E-08 116.23 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.089 1.0077 13.575 6 Median 0.97501 0.91976 6.8254 2 0 Median 1.4264 1.2036 10.906 2 0 Median 1.0383 1.0276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1421 0.98815 NaN 1 0 Median 34943000 17978000 16965000 23476000 12518000 10958000 4934900 2008100 2926800 5805100 3162000 2643100 0 0 0 0 0 0 726720 289940 436770 38095 424 40026 202037;202038;202039;202040;202041;202042 205358;205359;205360;205361;205362;205363 205359 6 VVQLDVR PHIENGGVAVLTGKKVVQLDVRDNMVKLND VAVLTGKKVVQLDVRDNMVKLNDGSQITYE K V V V R D 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 7 0 827.4865 O95831 O95831 233 239 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.0070717 90.706 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.437 1.4404 20.369 5 Median 1.3023 1.2735 17.425 2 0 Median 1.7793 1.5381 NaN 1 0 Median 0.95678 1.006 NaN 1 0 Median 1.911 1.5953 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36122000 13978000 22143000 12330000 5494100 6835600 17551000 5976600 11575000 4423600 1920500 2503100 1817200 587300 1229900 0 0 0 0 0 0 38096 1797 40027 202043;202044;202045;202046;202047 205364;205365;205366;205367;205368;205369;205370 205367 7 VVQLHEYSEELEK RVIVGGSSEYKINNKVVQLHEYSEELEKLG NKVVQLHEYSEELEKLGILIKARNFLVFQG K V V E K L 0 0 0 0 0 1 4 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1601.7937 Q14683;G8JLG1;H0Y7K8 Q14683 111 123 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2;3 1.8411E-22 174.42 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.0077 1.0054 10.248 8 Median 1.0784 1.0398 8.8659 2 0 Median NaN NaN NaN 0 0 Median 0.89649 0.95135 3.3997 2 0 Median 1.1863 1.0663 4.202 2 0 Median 0.88133 0.92354 18.485 2 1 Median NaN NaN NaN 0 0 Median 265220000 127400000 137820000 33399000 14672000 18727000 0 0 0 148920000 75784000 73136000 21588000 9093700 12494000 61318000 27854000 33464000 0 0 0 38097 2889 40028 202048;202049;202050;202051;202052;202053;202054;202055 205371;205372;205373;205374;205375;205376;205377;205378;205379;205380;205381;205382;205383;205384;205385 205381 15 VVQMLGSLGGQINK LSSNEAISLEEIRIRVVQMLGSLGGQINKN RVVQMLGSLGGQINKNLLTVTSSDEMMKSY R V V N K N 0 0 1 0 0 2 0 3 0 1 2 1 1 0 0 1 0 0 0 2 0 0 14 0 1442.7915 P78527 P78527 855 868 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.3918E-08 167.1 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 5 8 6 5 2 1.095 1.0326 19.29 30 Median 1.0113 0.97163 10.212 5 0 Median 1.3775 1.2229 15.792 5 0 Median 0.91783 0.99099 12.788 8 0 Median 1.4501 1.4431 9.829 6 0 Median 0.89465 0.93695 23.328 4 0 Median 1.3857 1.188 3.1197 2 0 Median 1070100000 529080000 541070000 304730000 151530000 153200000 114930000 51368000 63558000 577790000 292970000 284820000 29376000 11643000 17733000 40811000 20523000 20287000 2512200 1046400 1465800 38098 2647 40029;40030 202056;202057;202058;202059;202060;202061;202062;202063;202064;202065;202066;202067;202068;202069;202070;202071;202072;202073;202074;202075;202076;202077;202078;202079;202080;202081;202082;202083;202084;202085;202086 205386;205387;205388;205389;205390;205391;205392;205393;205394;205395;205396;205397;205398;205399;205400;205401;205402;205403;205404;205405;205406;205407;205408;205409;205410;205411;205412;205413;205414;205415;205416;205417;205418;205419;205420;205421;205422;205423;205424;205425;205426;205427;205428;205429;205430;205431;205432;205433;205434;205435;205436 205406 1340 51 VVQNDAYTAPALPSSIR SSSKLSMSKALPLTKVVQNDAYTAPALPSS QNDAYTAPALPSSIRTKALTNMSRTLVNKE K V V I R T 3 1 1 1 0 1 0 0 0 1 1 0 0 0 2 2 1 0 1 2 0 0 17 0 1800.937 F6VRR5;Q9BY77;F8WCX5;Q8WUT1 F6VRR5 247 263 POLDIP3 Polymerase delta-interacting protein 3 no no 2;3 2.4891E-14 158.42 By matching By MS/MS By MS/MS By MS/MS By matching 1 6 6 3 1 0.77607 0.76335 29.236 17 Median 0.46421 0.46309 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76948 0.87636 12.627 6 1 Median 0.88189 0.76995 39.095 6 1 Median 0.74575 0.74563 27.28 3 1 Median 0.77607 0.6724 NaN 1 0 Median 182610000 104160000 78444000 3276000 2245900 1030100 0 0 0 119810000 67094000 52713000 44709000 26192000 18517000 14287000 8391400 5895500 527510 238430 289080 38099 1051;3496 40031 202087;202088;202089;202090;202091;202092;202093;202094;202095;202096;202097;202098;202099;202100;202101;202102;202103 205437;205438;205439;205440;205441;205442;205443;205444;205445;205446;205447;205448;205449 205439 12 VVQNPPKPVMTTRPTAVK SPSEDEQEAVQEVPRVVQNPPKPVMTTRPT NPPKPVMTTRPTAVKATGGLCLLGAYADSD R V V V K A 1 1 1 0 0 1 0 0 0 0 0 2 1 0 4 0 3 0 0 4 0 0 18 2 1962.1085 Q8N3X1;F5GXL1 Q8N3X1 85 102 FNBP4 Formin-binding protein 4 yes no 3;4 2.5098E-06 57.499 By MS/MS By MS/MS 2 1 0.52481 0.598 13.603 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47885 0.54563 12.962 2 0 Median 0.58019 0.6494 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14627000 9849400 4777900 0 0 0 0 0 0 13814000 9333100 4481200 812940 516240 296700 0 0 0 0 0 0 38100 3370 40032 202104;202105;202106 205450;205451;205452;205453;205454 205451 5 VVQSFSTSKPPAILPVAAPTPVVPSSAPAAVAK NTSGGVQTILMPVNKVVQSFSTSKPPAILP PTPVVPSSAPAAVAKVKTEPETPGPSCLSQ K V V A K V 7 0 0 0 0 1 0 0 0 1 1 2 0 1 7 5 2 0 0 6 0 0 33 1 3183.7907 Q9ULM3 Q9ULM3 1076 1108 YEATS2 YEATS domain-containing protein 2 yes yes 3 0.0051031 22.387 By MS/MS By matching 1 1 0.27666 0.2853 8.3744 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.23494 0.26889 NaN 1 0 Median 0.3258 0.3027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3784600 2901900 882720 0 0 0 0 0 0 3569400 2769600 799740 215250 132270 82977 0 0 0 0 0 0 38101 4326 40033 202107;202108 205455 205455 1 VVQSLEQTAR FWEAEAARSPEEIRKVVQSLEQTAREILTL EEIRKVVQSLEQTAREILTLLQGVHQGAGF K V V A R E 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 1 1 0 0 2 0 0 10 0 1129.6091 E9PGT1;Q15631;H7C1D4;A0A0J9YVW2 E9PGT1 22 31 TSN Translin yes no 2 0.00038325 88.948 By MS/MS By MS/MS 1 1 0.86786 0.77279 37.87 2 Median NaN NaN NaN 0 0 Median 1.193 1.0101 NaN 1 0 Median 0.63135 0.59124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4518300 2220200 2298100 0 0 0 3125200 1412200 1713000 1393100 808010 585070 0 0 0 0 0 0 0 0 0 38102 925 40034 202109;202110 205456;205457;205458 205457 3 VVQSMTQLVR GYENSRCYNEMALIRVVQSMTQLVRRPPEV MALIRVVQSMTQLVRRPPEVFEQEIRQHFS R V V V R R 0 1 0 0 0 2 0 0 0 0 1 0 1 0 0 1 1 0 0 3 0 0 10 0 1159.6383 Q9C0C9;K7ES11 Q9C0C9 1108 1117 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes no 2 0.0004432 121.05 By MS/MS By MS/MS 1 1 1.4507 1.298 11.13 2 Median 1.4964 1.4043 NaN 1 1 Median 1.4063 1.1998 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27325000 10579000 16746000 19214000 7528100 11686000 8111200 3051200 5060000 0 0 0 0 0 0 0 0 0 0 0 0 38103 3904 40035 202111;202112 205459;205460;205461 205461 3 VVQVSAGDSHTAALTDDGR EGSEMVPGKVELQEKVVQVSAGDSHTAALT SAGDSHTAALTDDGRVFLWGSFRDNNGVIG K V V G R V 3 1 0 3 0 1 0 2 1 0 1 0 0 0 0 2 2 0 0 3 0 0 19 0 1897.913 P18754;C9JW69;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4 P18754 121 139 RCC1 Regulator of chromosome condensation yes no 2;3 1.0146E-84 246.96 By matching By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 12 14 7 14 1.2146 1.067 27.764 46 Median 0.96752 0.91476 NaN 1 0 Median 1.0169 0.95374 NaN 1 0 Median 1.0642 1.0253 11.818 11 2 Median 1.2581 1.0743 43.814 13 1 Median 1.0309 1.0294 11.34 7 1 Median 1.4342 1.1535 24.017 13 0 Median 1489500000 687520000 801940000 4300200 2296900 2003200 2195500 855990 1339500 648090000 305950000 342140000 599250000 271450000 327800000 140530000 68220000 72314000 95079000 38744000 56335000 38104 2061 40036 202113;202114;202115;202116;202117;202118;202119;202120;202121;202122;202123;202124;202125;202126;202127;202128;202129;202130;202131;202132;202133;202134;202135;202136;202137;202138;202139;202140;202141;202142;202143;202144;202145;202146;202147;202148;202149;202150;202151;202152;202153;202154;202155;202156;202157;202158;202159;202160;202161 205462;205463;205464;205465;205466;205467;205468;205469;205470;205471;205472;205473;205474;205475;205476;205477;205478;205479;205480;205481;205482;205483;205484;205485;205486;205487;205488;205489;205490;205491;205492;205493;205494;205495;205496;205497;205498;205499;205500;205501;205502;205503;205504;205505;205506;205507;205508;205509;205510;205511;205512;205513;205514;205515;205516;205517;205518;205519;205520;205521;205522;205523;205524;205525;205526;205527;205528;205529;205530;205531;205532;205533;205534;205535;205536;205537 205507 75 VVQVVKPHTPLIR ______________________________ SRVVQVVKPHTPLIRFPDRRDNPKPNVSEA R V V I R F 0 1 0 0 0 1 0 0 1 1 1 1 0 0 2 0 1 0 0 4 0 0 13 1 1484.9191 P82909 P82909 12 24 MRPS36 28S ribosomal protein S36, mitochondrial yes yes 2;3 1.4794E-14 185.29 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 1 0.84767 0.85015 11.696 6 Median 0.7727 0.7577 12.508 2 1 Median 1.0201 0.90061 6.5109 2 0 Median 0.80898 0.84033 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8512 0.9618 NaN 1 0 Median NaN NaN NaN 0 0 Median 93049000 47447000 45602000 26307000 14444000 11863000 55892000 26753000 29139000 7871600 4656700 3214900 0 0 0 2978300 1593200 1385100 0 0 0 38105 2654 40037 202162;202163;202164;202165;202166;202167;202168 205538;205539;205540;205541;205542;205543;205544;205545;205546;205547;205548 205548 11 VVQVWFQNAR LECEVLGNDIGLPKRVVQVWFQNARAKEKK GLPKRVVQVWFQNARAKEKKSKLSMAKHFG R V V A R A 1 1 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 1 0 3 0 0 10 0 1245.6618 Q15911;E7EVZ1;Q86UP3 Q15911 2989 2998 ZFHX3;ZFHX4 Zinc finger homeobox protein 3;Zinc finger homeobox protein 4 no no 2 0.00071985 103.92 By matching By MS/MS By matching 1 2 3 1.1817 1.1278 75.641 6 Median 1.6862 1.9032 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.291 1.4247 21.483 2 0 Median 1.1652 1.0143 86.163 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7684800 3742500 3942300 2303600 1083300 1220400 0 0 0 4151700 1880300 2271400 1229500 778930 450600 0 0 0 0 0 0 38106 2977;898 40038 202169;202170;202171;202172;202173;202174 205549 205549 1 VVSAAVQAQHSATK MDPNFISVRQQFLLKVVSAAVQAQHSATKV KVVSAAVQAQHSATKVKDPTEEATPTPFGK K V V T K V 4 0 0 0 0 2 0 0 1 0 0 1 0 0 0 2 1 0 0 3 0 0 14 0 1395.747 Q9H2M9 Q9H2M9 1220 1233 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit yes yes 2;3 1.2278E-05 88.681 By matching By MS/MS By matching 1 2 1 1.1011 1.0174 10.087 4 Median 1.0393 1.0086 NaN 1 0 Median 1.2244 1.0624 4.8939 2 0 Median 0.71182 0.86572 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4075300 1966800 2108500 354030 165630 188400 3114800 1508300 1606400 606490 292830 313660 0 0 0 0 0 0 0 0 0 38107 3945 40039 202175;202176;202177;202178 205550;205551;205552 205552 3 VVSAGTYPVLIQGETSVGK ILTSSVKLNLRDIVRVVSAGTYPVLIQGET GTYPVLIQGETSVGKTSLIQWLAAATGNHC R V V G K T 1 0 0 0 0 1 1 3 0 1 1 1 0 0 1 2 2 0 1 4 0 0 19 0 1904.0255 Q9NU22;Q5T795 Q9NU22 1072 1090 MDN1 Midasin yes no 2;3 1.9945E-18 119.25 By matching By MS/MS By matching 1 3 1 0.92823 0.99156 25.918 5 Median NaN NaN NaN 0 0 Median 0.65379 0.57789 NaN 1 0 Median 0.92823 0.99156 4.893 3 0 Median 1.1739 1.0789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20519000 10476000 10043000 0 0 0 643860 424320 219540 19574000 9904500 9669400 301360 147360 154010 0 0 0 0 0 0 38108 4112 40040 202179;202180;202181;202182;202183 205553;205554;205555;205556;205557 205556 5 VVSEDFLQDVSASTK KMNKKMEEVKEANIRVVSEDFLQDVSASTK VVSEDFLQDVSASTKSLQELFLAHILSPWG R V V T K S 1 0 0 2 0 1 1 0 0 0 1 1 0 1 0 3 1 0 0 3 0 0 15 0 1623.7992 P09874 P09874 453 467 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.2374E-11 152.85 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 2 2 10 8 4 1 1.2534 1.1619 18.836 27 Median 1.0857 1.0418 0.019012 2 1 Median 1.4218 1.2364 19.361 2 0 Median 1.1429 1.1793 24.864 10 1 Median 1.4139 1.2178 17.057 8 1 Median 1.1707 1.1698 10.393 4 0 Median 1.3084 1.0747 NaN 1 0 Median 1146800000 537540000 609220000 7619900 3578000 4041900 4821000 2032200 2788800 839740000 403100000 436650000 205030000 87060000 117970000 82580000 38725000 43855000 6963400 3046400 3917000 38109 1922 40041 202184;202185;202186;202187;202188;202189;202190;202191;202192;202193;202194;202195;202196;202197;202198;202199;202200;202201;202202;202203;202204;202205;202206;202207;202208;202209;202210 205558;205559;205560;205561;205562;205563;205564;205565;205566;205567;205568;205569;205570;205571;205572;205573;205574;205575;205576;205577;205578;205579;205580;205581;205582;205583;205584;205585;205586;205587;205588;205589;205590;205591;205592;205593;205594;205595;205596 205569 39 VVSEIPVLK ______________________________ DEATRRVVSEIPVLKTNAGPRDRELWVQRL R V V L K T 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 3 0 0 9 0 982.60628 Q9Y3C8 Q9Y3C8 9 17 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 2 0.0061228 55.531 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0296 0.88609 6.8895 4 Median 0.92829 0.8749 NaN 1 0 Median 1.0428 0.89743 NaN 1 0 Median 1.0502 0.98912 NaN 1 0 Median 1.0165 0.84148 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29100000 15069000 14031000 18446000 9650200 8796200 2794400 1349500 1444900 5991400 3212600 2778800 1868100 856960 1011100 0 0 0 0 0 0 38110 4420 40042 202211;202212;202213;202214 205597;205598;205599;205600;205601;205602 205599 6 VVSHSGSAGLSQVR PASSQTAPSSQAAARVVSHSGSAGLSQVRV RVVSHSGSAGLSQVRVVAQPSLPAVPQQSG R V V V R V 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 4 0 0 0 3 0 0 14 0 1382.7266 Q6P4R8;E9PQ59 Q6P4R8 793 806 NFRKB Nuclear factor related to kappa-B-binding protein yes no 3 0.031773 18.015 By MS/MS By matching By matching 1 1 1 1.1084 0.95092 2.0147 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85832 0.92903 NaN 1 0 Median 1.1084 0.96706 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1408 0.95092 NaN 1 0 Median 2000700 1022100 978610 0 0 0 0 0 0 1245600 663090 582470 217400 89537 127860 0 0 0 537720 269450 268270 38111 3159 40043 202215;202216;202217 205603;205604 205604 2 VVSISSEHLEPITPTK VTGGMCSVYLKDSEKVVSISSEHLEPITPT VSISSEHLEPITPTKNNKVKVILGEDREAT K V V T K N 0 0 0 0 0 0 2 0 1 2 1 1 0 0 2 3 2 0 0 2 0 0 16 0 1735.9356 O00267 O00267 1022 1037 SUPT5H Transcription elongation factor SPT5 yes yes 3 3.6709E-05 59.261 By MS/MS By MS/MS By MS/MS 2 2 1 0.75984 0.63095 39.561 5 Median 0.93437 0.9011 61.488 2 0 Median 0.88003 0.74563 23.617 2 1 Median 0.4937 0.52685 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26548000 16273000 10275000 5886900 3206100 2680700 5259300 2565900 2693400 15401000 10501000 4900300 0 0 0 0 0 0 0 0 0 38112 1452 40044 202218;202219;202220;202221;202222 205605;205606;205607;205608 205606 4 VVSLLDLTEYEMR DVYELTNLLRQLDFKVVSLLDLTEYEMRNA FKVVSLLDLTEYEMRNAVDEFLLLLDKGVY K V V M R N 0 1 0 1 0 0 2 0 0 0 3 0 1 0 0 1 1 0 1 2 0 0 13 0 1566.7963 A0A3B3IS32;Q9UDY8 A0A3B3IS32 380 392 MALT1 Mucosa-associated lymphoid tissue lymphoma translocation protein 1 yes no 2 0.017029 47.938 By MS/MS 1 1.378 1.2124 NaN 1 Median NaN NaN NaN 0 0 Median 1.378 1.2124 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1445000 634220 810790 0 0 0 1445000 634220 810790 0 0 0 0 0 0 0 0 0 0 0 0 38113 419 40045 202223 205609 205609 1 VVSLSEYR ISAIDLINIESFSSRVVSLSEYRQSLHTYL IESFSSRVVSLSEYRQSLHTYLRSKMSQVA R V V Y R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 951.50255 O00567;A0A494C128;H0YDU4;H0Y653 O00567 271 278 NOP56 Nucleolar protein 56 yes no 2 0.0022721 139.28 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 4 4 1.3589 1.1245 19.007 9 Median 1.3897 1.378 NaN 1 0 Median 1.3594 1.1764 NaN 1 0 Median 1.285 1.2931 20.908 2 0 Median NaN NaN NaN 0 0 Median 1.0077 1.0103 8.3153 2 0 Median 1.3589 1.1245 25.967 3 0 Median 148300000 68226000 80072000 3145600 1420600 1725000 8346400 3233700 5112700 48922000 23296000 25626000 0 0 0 59213000 28049000 31164000 28671000 12227000 16444000 38114 1472 40046 202224;202225;202226;202227;202228;202229;202230;202231;202232;202233;202234;202235;202236 205610;205611;205612;205613;205614;205615;205616;205617;205618;205619;205620;205621;205622;205623;205624;205625 205616 16 VVSNTIEPLTLFHK QHLNRLGIQAEPLYRVVSNTIEPLTLFHKM RVVSNTIEPLTLFHKMGVGRLDMYVLNPVK R V V H K M 0 0 1 0 0 0 1 0 1 1 2 1 0 1 1 1 2 0 0 2 0 0 14 0 1596.8875 E9PGC8;P78559 E9PGC8 417 430 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 3 0.0050438 28.297 By matching By MS/MS By matching 1 1 1 1.0751 1.1696 18.403 3 Median 1.0602 1.0529 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0751 1.1696 NaN 1 0 Median 1.6158 1.5062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7604000 3526700 4077400 4683400 2280600 2402800 0 0 0 2810900 1199300 1611600 109790 46820 62968 0 0 0 0 0 0 38115 923 40047 202237;202238;202239 205626 205626 1 VVSPGIDLSGLTLQSNAPSSMMVK LKCDSVCVNPYHYERVVSPGIDLSGLTLQS GLTLQSNAPSSMMVKDEYVHDFEGQPSLST R V V V K D 1 0 1 1 0 1 0 2 0 1 3 1 2 0 2 5 1 0 0 3 0 0 24 0 2430.2498 K7ES96;K7EIU8;Q13485 K7ES96 136 159 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 yes no 3 0.060738 6.8749 By MS/MS 1 0.83588 0.83657 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83588 0.83657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5414200 2820400 2593800 0 0 0 0 0 0 5414200 2820400 2593800 0 0 0 0 0 0 0 0 0 38116 1362 40048 202240 205627 205627 1 VVSPWNSEDAK SQCFAAWYGHCPGLKVVSPWNSEDAKGLIK PGLKVVSPWNSEDAKGLIKSAIRDNNPVVV K V V A K G 1 0 1 1 0 0 1 0 0 0 0 1 0 0 1 2 0 1 0 2 0 0 11 0 1230.5881 P11177;C9J634;F8WF02 P11177 174 184 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes no 2 0.00014526 101.65 By MS/MS By MS/MS By matching 3 1 1 0.98289 0.87076 14.089 5 Median 0.86449 0.78434 6.9857 3 0 Median 1.1066 0.92899 NaN 1 0 Median 1.0644 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53101000 27781000 25320000 36244000 19957000 16287000 15943000 7336100 8607300 914550 488440 426110 0 0 0 0 0 0 0 0 0 38117 1954 40049 202241;202242;202243;202244;202245 205628;205629;205630;205631 205630 4 VVSQLLR GVPLSYLLSRGQQVKVVSQLLRQAMHEGLL LSRGQQVKVVSQLLRQAMHEGLLMPVVKSE K V V L R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 7 0 813.50724 M0R2B7;P28340;A0A087WYJ2;M0QZR8;A0A2R8Y705;A0A2R8Y7K6 M0R2B7 555 561 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 2 0.007586 88.734 By MS/MS By matching By matching 1 1 1 0.81577 0.88846 10.231 3 Median 0.77584 0.7679 NaN 1 0 Median 1.1087 0.9353 NaN 1 0 Median 0.81577 0.88846 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8931000 4597800 4333200 1975700 1079900 895860 5219100 2594300 2624900 1736100 923660 812440 0 0 0 0 0 0 0 0 0 38118 1436 40050 202246;202247;202248 205632 205632 1 VVSQYHELVVQAR DNVVKKVQAAQSEAKVVSQYHELVVQARDD AKVVSQYHELVVQARDDFKRELDSITPEVL K V V A R D 1 1 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 4 0 0 13 0 1526.8205 Q16891;B9A067;C9J406;H7C463 Q16891 354 366 IMMT MICOS complex subunit MIC60 yes no 2;3 3.871E-08 158.04 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 1 3 1.0597 0.95174 17.869 11 Median 1.0329 0.97626 3.5976 2 0 Median 1.4763 1.2793 5.9248 3 0 Median NaN NaN NaN 0 0 Median 1.0927 0.94161 6.5494 2 0 Median 0.93663 0.94963 NaN 1 1 Median 1.1754 0.9444 8.4571 3 2 Plateau 198270000 92635000 105630000 131470000 63575000 67900000 23878000 7958900 15919000 0 0 0 6105300 2680600 3424700 15172000 8190100 6981500 21639000 10230000 11409000 38119 3001 40051 202249;202250;202251;202252;202253;202254;202255;202256;202257;202258;202259;202260 205633;205634;205635;205636;205637;205638;205639;205640;205641;205642;205643;205644;205645;205646;205647;205648 205647 16 VVSQYSSLLSPMSVNAVMK RETLLNSATTSLNSKVVSQYSSLLSPMSVN YSSLLSPMSVNAVMKVIDPATATSVDLRDI K V V M K V 1 0 1 0 0 1 0 0 0 0 2 1 2 0 1 5 0 0 1 4 0 0 19 0 2039.0431 P50991 P50991 175 193 CCT4 T-complex protein 1 subunit delta yes yes 2;3 3.7466E-06 51.875 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 3 2 4 1 1.0236 0.98047 57.885 15 Median 0.98675 0.93437 68.631 5 0 Median 0.96225 0.82752 28.638 3 0 Median 0.62969 0.6379 78.801 2 0 Median NaN NaN NaN 0 0 Median 1.6153 1.6079 13.463 4 0 Median 0.83326 0.69332 NaN 1 0 Median 64300000 31159000 33140000 43435000 21184000 22251000 4297400 2096100 2201200 12120000 6191300 5929100 0 0 0 3900900 1391200 2509600 545830 296790 249040 38120 2424 40052 202261;202262;202263;202264;202265;202266;202267;202268;202269;202270;202271;202272;202273;202274;202275 205649;205650;205651;205652;205653;205654;205655;205656;205657;205658 205650 10 VVSSEGGRPSVDLSFQPSQPLSK LHAEELVGRGIPIERVVSSEGGRPSVDLSF PSVDLSFQPSQPLSKSSSSPELQTLQDILG R V V S K S 0 1 0 1 0 2 1 2 0 0 2 1 0 1 3 6 0 0 0 3 0 0 23 1 2400.2285 A0A2R8Y7X5;A0A2R8Y6C9;A0A2R8Y5F1;A0A2R8YGU4;X5D2U8;H3BMQ0;A0A2R8YDZ2;A0A2R8YDR3;A0A2R8Y7C8;A0A2R8YGD6;P49815;A0A2R8Y670;H3BQK4 A0A2R8Y7X5 1295 1317 TSC2 Tuberin yes no 3 2.2259E-05 50.055 By MS/MS 1 1.2594 1.2645 NaN 1 Median 1.2594 1.2645 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12533000 4557700 7975300 12533000 4557700 7975300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38121 384 40053 202276 205659 205659 1 VVSSIEQK VAYKNVVGARRSSWRVVSSIEQKTEGAEKK ARRSSWRVVSSIEQKTEGAEKKQQMAREYR R V V Q K T 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 2 0 0 0 2 0 0 8 0 888.49165 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4 P63104 61 68 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.0035841 87.323 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 1 1.2285 1.0586 10.695 9 Median 1.0934 1.0471 4.9691 2 0 Median 1.2373 1.0456 1.7474 2 0 Median 1.0851 1.0263 NaN 1 0 Median 1.2386 1.0302 5.7713 2 0 Median 1.3365 1.3724 NaN 1 0 Median 1.4818 1.2354 NaN 1 0 Median 28454000 13378000 15076000 16182000 7750200 8431900 5418400 2427400 2991100 4753400 2292600 2460800 806150 359740 446410 939390 391500 547890 354500 156820 197680 38122 2618 40054 202277;202278;202279;202280;202281;202282;202283;202284;202285 205660;205661;205662;205663;205664;205665;205666;205667 205661 8 VVSSIEQKTEGAEK VAYKNVVGARRSSWRVVSSIEQKTEGAEKK RVVSSIEQKTEGAEKKQQMAREYREKIETE R V V E K K 1 0 0 0 0 1 3 1 0 1 0 2 0 0 0 2 1 0 0 2 0 0 14 1 1503.7781 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4 P63104 61 74 YWHAZ 14-3-3 protein zeta/delta yes no 2;3 3.6094E-07 100.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 2 2 1.09 1.0686 23.116 12 Median 1.0621 1.0793 21.416 4 0 Median 1.153 1.053 5.0449 2 0 Median 1.0622 1.0607 0.68039 2 0 Median 1.178 1.0608 1.4091 2 0 Median 1.1668 1.2335 61.137 2 0 Median NaN NaN NaN 0 0 Median 65398000 30982000 34416000 31210000 15302000 15908000 15567000 7056500 8510400 8339100 3972400 4366700 8012000 3551500 4460500 2270200 1099400 1170800 0 0 0 38123 2618 40055 202286;202287;202288;202289;202290;202291;202292;202293;202294;202295;202296;202297 205668;205669;205670;205671;205672;205673;205674;205675;205676;205677;205678;205679;205680;205681;205682 205678 15 VVSSIEQKTEGAEKK VAYKNVVGARRSSWRVVSSIEQKTEGAEKK VVSSIEQKTEGAEKKQQMAREYREKIETEL R V V K K Q 1 0 0 0 0 1 3 1 0 1 0 3 0 0 0 2 1 0 0 2 0 0 15 2 1631.873 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4 P63104 61 75 YWHAZ 14-3-3 protein zeta/delta yes no 3;4 0.00029669 44.925 By MS/MS By MS/MS By matching By MS/MS By matching 3 2 1 2 1 1.1699 1.1068 12.736 9 Median 1.0438 1.1023 16.403 3 0 Median 1.2227 1.1965 11.017 2 0 Median 1.189 1.3416 NaN 1 0 Median 1.187 1.0914 2.0482 2 0 Median 0.88107 0.964 NaN 1 0 Median NaN NaN NaN 0 0 Median 11672000 5487600 6184500 5063100 2518700 2544400 3660900 1666500 1994400 335830 143030 192800 2049200 914700 1134500 563120 244680 318440 0 0 0 38124 2618 40056 202298;202299;202300;202301;202302;202303;202304;202305;202306 205683;205684;205685;205686;205687;205688;205689;205690;205691;205692 205687 10 VVSSSIVDK LARAVASQLDCNFLKVVSSSIVDKYIGESA DCNFLKVVSSSIVDKYIGESARLIREMFNY K V V D K Y 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 3 0 0 0 3 0 0 9 0 932.51786 A0A087X2I1;P62333;H0YJC0;H0YJS8 A0A087X2I1 212 220 PSMC6 26S protease regulatory subunit 10B yes no 2 0.0098224 48.794 By matching By MS/MS By matching 1 1 1 1.2184 1.0847 16.979 3 Median 1.1047 1.0847 NaN 1 0 Median 1.2184 1.0402 NaN 1 0 Median 1.2962 1.4222 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8218300 3691800 4526500 795640 364820 430820 6922400 3091400 3831000 500280 235530 264750 0 0 0 0 0 0 0 0 0 38125 138 40057 202307;202308;202309 205693 205693 1 VVSSSIVDKYIGESAR LARAVASQLDCNFLKVVSSSIVDKYIGESA VSSSIVDKYIGESARLIREMFNYARDHQPC K V V A R L 1 1 0 1 0 0 1 1 0 2 0 1 0 0 0 4 0 0 1 3 0 0 16 1 1708.8996 A0A087X2I1;P62333;H0YJC0;H0YJS8 A0A087X2I1 212 227 PSMC6 26S protease regulatory subunit 10B yes no 2;3 3.4688E-09 103.88 By MS/MS By matching By matching 2 1 1 1.1421 1.143 17.562 4 Median 1.0401 1.1148 12.963 2 0 Median 1.1442 1.0693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6945 1.5069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64279000 31732000 32547000 63978000 31603000 32375000 182490 80170 102320 0 0 0 118710 48826 69880 0 0 0 0 0 0 38126 138 40058 202310;202311;202312;202313 205694;205695;205696;205697 205696 4 VVSSVLQFGNISFK HIMGFSHEEILSMLKVVSSVLQFGNISFKK KVVSSVLQFGNISFKKERNTDQASMPENTV K V V F K K 0 0 1 0 0 1 0 1 0 1 1 1 0 2 0 3 0 0 0 3 0 0 14 0 1523.8348 P35580 P35580 349 362 MYH10 Myosin-10 yes yes 2 5.4183E-06 123.8 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 2 1 1.1644 1.1234 30.924 7 Median 1.1644 1.1234 NaN 1 0 Median 1.3045 1.156 NaN 1 0 Median 0.64944 0.72112 NaN 1 0 Median 1.4903 1.3447 NaN 1 0 Median 0.65545 0.68258 1.4682 2 0 Median 1.4812 1.2878 NaN 1 0 Median 35990000 17933000 18057000 15253000 7103400 8149200 9688000 4431300 5256800 7239200 4165700 3073600 443120 153880 289230 3280700 2045800 1234900 86461 32939 53522 38127 2245 40059 202314;202315;202316;202317;202318;202319;202320 205698;205699;205700;205701;205702;205703;205704;205705 205704 8 VVSSVLQFGNISFKK HIMGFSHEEILSMLKVVSSVLQFGNISFKK VVSSVLQFGNISFKKERNTDQASMPENTVA K V V K K E 0 0 1 0 0 1 0 1 0 1 1 2 0 2 0 3 0 0 0 3 0 0 15 1 1651.9297 P35580 P35580 349 363 MYH10 Myosin-10 yes yes 3 0.0032939 27.029 By MS/MS By MS/MS By MS/MS 1 1 1 0.76506 1.0794 30.32 3 Plateau 1.4107 1.3902 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72624 0.83807 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76506 0.80819 NaN 1 0 Median NaN NaN NaN 0 0 Median 11534000 5886100 5648100 4928500 1921500 3007000 0 0 0 4630000 2873900 1756100 0 0 0 1975700 1090700 884990 0 0 0 38128 2245 40060 202321;202322;202323 205706;205707;205708 205708 3 VVSTFGVIFDPVK KRQKWTRREEADFYRVVSTFGVIFDPVKQQ YRVVSTFGVIFDPVKQQFDWNQFRAFARLD R V V V K Q 0 0 0 1 0 0 0 1 0 1 0 1 0 2 1 1 1 0 0 4 0 0 13 0 1406.781 Q9P2D1 Q9P2D1 1977 1989 CHD7 Chromodomain-helicase-DNA-binding protein 7 yes yes 2 0.020689 30.564 By matching By MS/MS By matching By matching 1 2 1 1 0.808 0.79929 16.956 5 Median 0.67299 0.64469 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67748 0.74248 25.816 2 0 Median 0.92678 0.86848 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9543 0.79929 NaN 1 0 Median 3572600 2158900 1413700 1938700 1193100 745540 0 0 0 1264400 737430 526940 71951 40707 31244 0 0 0 297640 187620 110010 38129 4220 40061 202324;202325;202326;202327;202328 205709 205709 1 VVSVQLGDGTR LLKLSPATPTSEGPKVVSVQLGDGTRLKGT EGPKVVSVQLGDGTRLKGTVLPVATIQNAS K V V T R L 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 1 1 0 0 3 0 0 11 0 1129.6091 Q8N1G0;F8WCX2 Q8N1G0 385 395 ZNF687 Zinc finger protein 687 yes no 2 0.0016969 80.24 By MS/MS 1 0.80681 0.88744 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80681 0.88744 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5645300 2903500 2741800 0 0 0 0 0 0 5645300 2903500 2741800 0 0 0 0 0 0 0 0 0 38130 3357 40062 202329 205710 205710 1 VVSWLVSSDNPQPEMAPPVHEPR EISDDNARLPCFNGRVVSWLVSSDNPQPEM DNPQPEMAPPVHEPRAELAPPAPPLPPLPP R V V P R A 1 1 1 1 0 1 2 0 1 0 1 0 1 0 5 3 0 1 0 4 0 0 23 0 2570.2588 I3L2N2;O14641;I3L2W9;I3L0M7 I3L2N2 85 107 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes no 3 0.0026171 32.081 By MS/MS 1 0.21346 0.22908 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21346 0.22908 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3447500 2727100 720420 0 0 0 0 0 0 3447500 2727100 720420 0 0 0 0 0 0 0 0 0 38131 1284 40063 202330 205711 205711 1 VVTAGSAILQK YQKLLELILLDQTVRVVTAGSAILQKCHFY QTVRVVTAGSAILQKCHFYEVLSEIKRLGD R V V Q K C 2 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 11 0 1085.6445 Q69YN4 Q69YN4 546 556 KIAA1429 Protein virilizer homolog yes yes 2 0.00018967 94.85 By matching By MS/MS By matching By matching 1 2 1 1 1.285 1.1613 21.723 5 Median NaN NaN NaN 0 0 Median 1.8731 1.6517 NaN 1 0 Median 1.095 1.197 24.214 2 0 Median 1.285 1.1613 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1799 1.0109 NaN 1 0 Median 23620000 10813000 12806000 0 0 0 1809400 981100 828350 15590000 7074900 8514800 2925500 1192000 1733500 0 0 0 3295100 1565400 1729700 38132 3130 40064 202331;202332;202333;202334;202335 205712;205713 205712 2 VVTATLWGEDADKFDGSR EVAKRNIYLMDTSGKVVTATLWGEDADKFD ATLWGEDADKFDGSRQPVLAIKGARVSDFG K V V S R Q 2 1 0 3 0 0 1 2 0 0 1 1 0 1 0 1 2 1 0 2 0 0 18 1 1965.9432 P27694;I3L4R8 P27694 355 372 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes no 3 1.265E-06 78.234 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 2 2 1 1.3392 1.2564 22.349 7 Median 1.0245 1.0276 NaN 1 0 Median 1.264 1.1567 NaN 1 0 Median 1.4309 1.5573 11.171 2 0 Median 1.3546 1.2565 0.012708 2 0 Median 0.81665 0.84571 NaN 1 1 Median NaN NaN NaN 0 0 Median 40191000 17238000 22952000 11539000 5343100 6195500 4495200 1943100 2552100 18748000 7143700 11604000 1071700 450780 620930 4337200 2357800 1979400 0 0 0 38133 2156 40065 202336;202337;202338;202339;202340;202341;202342 205714;205715;205716;205717 205715 4 VVTDLISLIR HCTAFWLLVDLNRCRVVTDLISLIRQRFGF LNRCRVVTDLISLIRQRFGFSSGAFLGLYL R V V I R Q 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 2 0 0 10 0 1127.6914 P38432 P38432 37 46 COIL Coilin yes yes 2 0.0030923 57.96 By matching By matching By MS/MS By matching By MS/MS By MS/MS 2 2 5 1 4 3 1.3888 1.3261 19.959 17 Median 0.90866 0.89893 5.5206 2 0 Median 1.2483 1.0661 39.28 2 0 Median 1.4639 1.3673 14.106 5 0 Median 1.433 1.1662 NaN 1 0 Median 1.4083 1.4495 4.4023 4 0 Median 1.5703 1.3138 9.8597 3 0 Plateau 87972000 35141000 52831000 2227200 1160200 1066900 2150400 1015200 1135200 11299000 5178800 6119800 206820 72637 134180 13320000 5594900 7725000 58769000 22120000 36649000 38134 2274 40066 202343;202344;202345;202346;202347;202348;202349;202350;202351;202352;202353;202354;202355;202356;202357;202358;202359 205718;205719;205720;205721;205722;205723;205724;205725;205726 205719 9 VVTDTDETELAR IEEKRGVFNVQMEPKVVTDTDETELARQME EPKVVTDTDETELARQMERLERENAEVDGD K V V A R Q 1 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 12 0 1347.6518 P05198 P05198 277 288 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 7.9407E-18 179.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 2 1 3 4 1.1683 0.9681 17.314 14 Median 1.0024 0.96527 24.656 4 1 Median 1.1795 0.9681 2.0933 2 0 Median 1.2386 1.1987 NaN 1 0 Median 1.2455 1.0393 5.5013 3 0 Plateau NaN NaN NaN 0 0 Median 1.1683 0.92674 20.846 4 0 Median 432310000 190890000 241410000 50394000 22315000 28078000 55594000 24991000 30603000 84705000 35887000 48817000 225230000 100010000 125220000 0 0 0 16390000 7692800 8697400 38135 1862 40067 202360;202361;202362;202363;202364;202365;202366;202367;202368;202369;202370;202371;202372;202373;202374 205727;205728;205729;205730;205731;205732;205733;205734;205735;205736;205737;205738;205739;205740;205741;205742;205743;205744;205745;205746;205747;205748;205749;205750;205751;205752;205753 205729 27 VVTGVANALAHR FGSEFSPELQASFQKVVTGVANALAHRYH_ FQKVVTGVANALAHRYH_____________ K V V H R Y 3 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1206.6833 CON__Q3SX09 CON__Q3SX09 188 199 yes yes 2;3 1.8416E-78 218.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 5 3 6 5 0.0057937 0.0058168 134.87 6 Median 0.005849 0.0056625 NaN 1 1 Median 0.003964 0.0033973 98.541 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.023602 0.024033 196.83 2 2 Median NaN NaN NaN 0 0 Median 1781600000 1780600000 1009800 85754000 85709000 45329 302300000 301720000 585000 86646000 86646000 0 21950000 21950000 0 877580000 877200000 379480 407380000 407380000 0 + 38136 777 40068 202375;202376;202377;202378;202379;202380;202381;202382;202383;202384;202385;202386;202387;202388;202389;202390;202391;202392;202393;202394;202395;202396;202397;202398;202399 205754;205755;205756;205757;205758;205759;205760;205761;205762;205763;205764;205765;205766;205767;205768;205769;205770;205771;205772;205773;205774;205775;205776;205777;205778;205779 205769 26 VVTGVANALAHRYH FGSEFSPELQASFQKVVTGVANALAHRYH_ KVVTGVANALAHRYH_______________ K V V Y H - 3 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 1 0 1 3 0 0 14 1 1506.8055 CON__Q3SX09 CON__Q3SX09 188 201 yes yes 3 0.0016535 52.555 By MS/MS 1 0.052562 0.051088 NaN 1 Median 0.052562 0.051088 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11304000 11042000 262180 11304000 11042000 262180 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 38137 777 40069 202400 205780 205780 1 VVTKPGHIINPIK TWNTQRAFQKLTTPKVVTKPGHIINPIKAE PKVVTKPGHIINPIKAEDVGYRSSSRSDLS K V V I K A 0 0 1 0 0 0 0 1 1 3 0 2 0 0 2 0 1 0 0 2 0 0 13 1 1414.866 Q9BVJ6 Q9BVJ6 721 733 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3 0.03833 29.55 By MS/MS 1 1.0317 1.1559 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0317 1.1559 NaN 1 1 Median NaN NaN NaN 0 0 Median 5240300 2572100 2668300 0 0 0 0 0 0 0 0 0 0 0 0 5240300 2572100 2668300 0 0 0 38138 3855 40070 202401 205781 205781 1 VVTKPGHIINPIKAEDVGYR TWNTQRAFQKLTTPKVVTKPGHIINPIKAE GHIINPIKAEDVGYRSSSRSDLSVIQRNPK K V V Y R S 1 1 1 1 0 0 1 2 1 3 0 2 0 0 2 0 1 0 1 3 0 0 20 2 2205.227 Q9BVJ6 Q9BVJ6 721 740 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 4 0.00061818 27.523 By MS/MS 1 0.78084 0.92016 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78084 0.92016 NaN 1 0 Median NaN NaN NaN 0 0 Median 7694400 4153900 3540500 0 0 0 0 0 0 0 0 0 0 0 0 7694400 4153900 3540500 0 0 0 38139 3855 40071 202402 205782 205782 1 VVTLQGQIIEQSGTMTGGGSK DQATRVAYQKDRRWRVVTLQGQIIEQSGTM QIIEQSGTMTGGGSKVMKGRMGSSLVIEIS R V V S K V 0 0 0 0 0 3 1 5 0 2 1 1 1 0 0 2 3 0 0 2 0 0 21 0 2090.0678 Q9NTJ3;E9PD53 Q9NTJ3 737 757 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein yes no 2;3 1.4119E-194 268.93 By MS/MS By matching By MS/MS By MS/MS By matching By matching 3 2 2 2 1 1 1.1631 1.083 35.075 11 Median 1.2789 1.2325 11.25 3 2 Median 0.83944 0.7279 75.053 2 0 Median 1.2073 1.2901 24.742 2 1 Median 1.2332 1.1205 7.9396 2 0 Median 0.74711 0.78626 NaN 1 0 Median 0.85311 0.7329 NaN 1 0 Median 102520000 45261000 57261000 75353000 32493000 42860000 2431800 1183800 1248000 21495000 9900400 11595000 1662400 725190 937170 1412700 859060 553610 166150 99039 67107 38140 4108 40072 202403;202404;202405;202406;202407;202408;202409;202410;202411;202412;202413 205783;205784;205785;205786;205787;205788;205789;205790 205785 8 VVTMEVEAR RGTITVSAQELKDNRVVTMEVEARNLDKKD ELKDNRVVTMEVEARNLDKKDFLGKSDPFL R V V A R N 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 3 0 0 9 0 1032.5274 Q99829;B0QZ18;F2Z2V0;A6PVH9;E7ENH5;Q5JX58;Q5JX59;Q5JX60;Q5JX44;Q5JX56;Q5JX55 Q99829 139 147 CPNE1 Copine-1 yes no 2 1.8617E-05 155.75 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 2 1 1.161 1.098 11.093 8 Median 1.1682 1.0943 NaN 1 0 Median 1.2109 1.0474 14.316 4 1 Median 1.091 1.0974 4.978 2 0 Median 1.3813 1.1532 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143200000 66379000 76826000 68967000 31648000 37319000 61112000 28198000 32914000 11655000 5928300 5727000 1470100 603790 866350 0 0 0 0 0 0 38141 559 40073;40074 202414;202415;202416;202417;202418;202419;202420;202421 205791;205792;205793;205794;205795;205796;205797;205798;205799;205800;205801;205802;205803 205792 220 13 VVTNYNSAHDQNSNLLIEYFR AVACTVLRCLGIPTRVVTNYNSAHDQNSNL SAHDQNSNLLIEYFRNEFGEIQGDKSEMIW R V V F R N 1 1 4 1 0 1 1 0 1 1 2 0 0 1 0 2 1 0 2 2 0 0 21 0 2496.2034 P21980 P21980 297 317 TGM2 Protein-glutamine gamma-glutamyltransferase 2 yes yes 3 3.2235E-05 37.969 By MS/MS 1 0.76362 0.75272 NaN 1 Median 0.76362 0.75272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2231000 1303100 927910 2231000 1303100 927910 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38142 2094 40075 202422 205804 205804 1 VVTQNICQYR GIRLSAEQAKQLVSRVVTQNICQYRSLQYS QLVSRVVTQNICQYRSLQYSRQEGLDGGLP R V V Y R S 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 10 0 1279.6343 Q8N163;H0YB24;G3V119;A0A087X2B6 Q8N163 748 757 CCAR2 Cell cycle and apoptosis regulator protein 2 yes no 2 9.4822E-05 132.69 By MS/MS 1 1.2636 1.0614 NaN 1 Median NaN NaN NaN 0 0 Median 1.2636 1.0614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6834800 3019900 3814900 0 0 0 6834800 3019900 3814900 0 0 0 0 0 0 0 0 0 0 0 0 38143 3354 40076 202423 205805 205805 1 VVTSEDQVQEGTK YKQENEMLSSSRDQRVVTSEDQVQEGTKVL QRVVTSEDQVQEGTKVLKLKTKMADKENMK R V V T K V 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 1 2 0 0 3 0 0 13 0 1418.6889 Q8WWK9;C9J7Y4 Q8WWK9 58 70 CKAP2 Cytoskeleton-associated protein 2 yes no 2 0.0015521 51.927 By MS/MS 1 1.43 1.519 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.43 1.519 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2065100 826680 1238400 0 0 0 0 0 0 2065100 826680 1238400 0 0 0 0 0 0 0 0 0 38144 3510 40077 202424 205806;205807 205806 2 VVTSEQHIPVSANLPSGYLGYQELGMGR TQVGYSWLPLLKDGRVVTSEQHIPVSANLP LPSGYLGYQELGMGRHYGPEIKWVDGGKPL R V V G R H 1 1 1 0 0 2 2 4 1 1 3 0 1 0 2 3 1 0 2 3 0 0 28 0 3001.4968 A0A088AWN3;A0A0A0MSY4;Q9BZ29;A0A0A0MT38;Q6ZSL5 A0A088AWN3 779 806 DOCK9 Dedicator of cytokinesis protein 9 yes no 3 0.0010819 26.187 By MS/MS 1 0.54311 0.60217 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54311 0.60217 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3334600 2097600 1237000 0 0 0 0 0 0 3334600 2097600 1237000 0 0 0 0 0 0 0 0 0 38145 139 40078 202425 205808 205808 1 VVTTAIKEETEK QLNLKAEQSKKELDKVVTTAIKEETEKVAA LDKVVTTAIKEETEKVAAVKQLEESKTKIE K V V E K V 1 0 0 0 0 0 3 0 0 1 0 2 0 0 0 0 3 0 0 2 0 0 12 1 1346.7293 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7 E9PHM6 1668 1679 DST Dystonin yes no 2;3 0.00022004 62.088 By MS/MS By matching By MS/MS 2 2 2 0.88928 0.90239 14.604 6 Median NaN NaN NaN 0 0 Median 1.046 0.99509 8.1189 2 0 Median 0.6497 0.73842 6.2614 2 0 Median 0.88928 0.90345 5.8778 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8585200 4073200 4512000 0 0 0 5968000 2722400 3245600 1279000 736140 542900 1338100 614650 723500 0 0 0 0 0 0 38146 934 40079 202426;202427;202428;202429;202430;202431 205809;205810;205811;205812;205813;205814;205815 205810 6 VVTTNYKPVANHQYNIEYER EESSKPVRLSQQLDKVVTTNYKPVANHQYN YKPVANHQYNIEYERKKKEDGKRARADKQH K V V E R K 1 1 3 0 0 1 2 0 1 1 0 1 0 0 1 0 2 0 3 3 0 0 20 1 2437.2026 P13984 P13984 148 167 GTF2F2 General transcription factor IIF subunit 2 yes yes 3;4 2.0166E-14 106.67 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 4 0.83325 0.83747 13.098 13 Median 0.82607 0.83116 4.7157 2 1 Median 1.0984 1.0231 12.609 2 0 Median 0.77045 0.83747 10.985 5 0 Median 0.84553 0.77281 11.552 4 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 143770000 76932000 66834000 30730000 16972000 13758000 6920800 3462100 3458700 78969000 42893000 36076000 27147000 13606000 13541000 0 0 0 0 0 0 38147 1999 40080 202432;202433;202434;202435;202436;202437;202438;202439;202440;202441;202442;202443;202444 205816;205817;205818;205819;205820;205821;205822;205823;205824;205825;205826;205827;205828;205829;205830;205831;205832 205832 17 VVTVFSVADGYSENNVFYGHHAK YSHDGAFLAVCDASKVVTVFSVADGYSENN DGYSENNVFYGHHAKIVCLAWSPDNEHFAS K V V A K I 2 0 2 1 0 0 1 2 2 0 0 1 0 2 0 2 1 0 2 5 0 0 23 0 2539.2132 O75083 O75083 512 534 WDR1 WD repeat-containing protein 1 yes yes 3;4 2.3158E-05 36.805 By MS/MS By matching By matching By matching 2 2 1 1 1.2025 1.1405 31.78 6 Median 1.2025 1.1405 5.1075 2 0 Median 0.96921 0.85035 48.187 2 0 Median 1.5419 1.5317 NaN 1 0 Median 1.0304 0.89585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24909000 10276000 14634000 15925000 6566400 9358500 2352200 1005300 1346900 6484100 2642400 3841800 148040 61513 86531 0 0 0 0 0 0 38148 1643 40081 202445;202446;202447;202448;202449;202450 205833;205834;205835 205834 3 VVTVGQFK VRGDFDENLNYPEQKVVTVGQFKIGLIHGH LNYPEQKVVTVGQFKIGLIHGHQVIPWGDM K V V F K I 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 3 0 0 8 0 876.5069 F8VXU5;Q9UBQ0 F8VXU5 106 113 VPS29 Vacuolar protein sorting-associated protein 29 yes no 2 0.0023545 114.72 By MS/MS By MS/MS By MS/MS 3 2 1 1.0433 0.97579 31.987 6 Median 0.99009 0.92421 23.752 3 0 Plateau 1.5168 1.3142 25.183 2 0 Median 1.0993 1.0302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51184000 23171000 28013000 23570000 11614000 11956000 15505000 6051000 9454400 12108000 5506100 6602100 0 0 0 0 0 0 0 0 0 38149 1073 40082 202451;202452;202453;202454;202455;202456 205836;205837;205838;205839;205840;205841 205837 6 VVTVHLEK EVKVEESSWLIEDGKVVTVHLEKINKMEWW WLIEDGKVVTVHLEKINKMEWWSRLVSSDP K V V E K I 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 3 0 0 8 0 923.54402 Q9Y266 Q9Y266 240 247 NUDC Nuclear migration protein nudC yes yes 2 0.013722 52.482 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.2133 1.1126 22.725 6 Median 1.2885 1.2367 2.4818 2 0 Median 1.0936 0.95583 9.0026 2 0 Median 1.379 1.5391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0057 0.84448 NaN 1 0 Median 18436000 8095400 10341000 5986300 2645400 3340900 10159000 4508100 5651200 1398700 551140 847550 0 0 0 0 0 0 891950 390760 501190 38150 4376 40083 202457;202458;202459;202460;202461;202462 205842;205843 205843 2 VVTVSEYYLRPVSQQEFDK PDNVRAMVRLAVGSRVVTVSEYYLRPVSQQ SEYYLRPVSQQEFDKNTLDLRQQNGTASSR R V V D K N 0 1 0 1 0 2 2 0 0 0 1 1 0 1 1 2 1 0 2 4 0 0 19 1 2286.1532 Q92917 Q92917 281 299 GPKOW G patch domain and KOW motifs-containing protein yes yes 3 0.00016442 48.848 By MS/MS 1 0.93912 1.0504 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93912 1.0504 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5728500 2790900 2937600 0 0 0 0 0 0 5728500 2790900 2937600 0 0 0 0 0 0 0 0 0 38151 3566 40084 202463 205844 205844 1 VVTVVTTK GGGGNEKKSGPTVTKVVTVVTTKKAVVDSD SGPTVTKVVTVVTTKKAVVDSDKKKGELME K V V T K K 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 4 0 0 8 0 845.52222 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 264 271 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.0096345 60.436 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.1589 1.0654 5.2701 4 Median 1.0536 1.0674 NaN 1 0 Median 1.2322 1.0563 NaN 1 0 Median 1.09 1.18 NaN 1 0 Median 1.2542 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8380500 3844700 4535800 353730 163380 190360 4500800 2045100 2455700 3040700 1421000 1619700 485260 215250 270020 0 0 0 0 0 0 38152 3216 40085 202464;202465;202466;202467 205845;205846;205847 205847 3 VVTVVTTKK GGGGNEKKSGPTVTKVVTVVTTKKAVVDSD GPTVTKVVTVVTTKKAVVDSDKKKGELMEN K V V K K A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 4 0 0 9 1 973.61718 Q7L014;A0A0C4DG89;D6RJA6 Q7L014 264 272 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 0.050917 34.808 By MS/MS 1 1.0712 1.2147 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0712 1.2147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 439770 223040 216730 0 0 0 0 0 0 439770 223040 216730 0 0 0 0 0 0 0 0 0 38153 3216 40086 202468 205848 205848 1 VVTYGMANLLTGPK SDTAKGYNLLKPMGKVVTYGMANLLTGPKR KVVTYGMANLLTGPKRNLMALARTWWNQFS K V V P K R 1 0 1 0 0 0 0 2 0 0 2 1 1 0 1 0 2 0 1 2 0 0 14 0 1462.7854 Q99536;K7ESA3 Q99536 282 295 VAT1 Synaptic vesicle membrane protein VAT-1 homolog yes no 2 1.1362E-05 99.522 By MS/MS By MS/MS By MS/MS 4 2 2 1.0045 0.94736 27.643 8 Median 0.92269 0.85545 12.193 4 2 Median 1.4982 1.2885 39.103 2 0 Median 1.1064 1.1481 16.721 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96897000 52467000 44430000 67117000 37410000 29707000 24024000 12305000 11719000 5755600 2752100 3003500 0 0 0 0 0 0 0 0 0 38154 3750 40087 202469;202470;202471;202472;202473;202474;202475;202476 205849;205850;205851;205852;205853;205854;205855;205856;205857;205858 205852 10 VVVAENFDEIVNNENK LKSEPIPESNDGPVKVVVAENFDEIVNNEN VVAENFDEIVNNENKDVLIEFYAPWCGHCK K V V N K D 1 0 4 1 0 0 3 0 0 1 0 1 0 1 0 0 0 0 0 4 0 0 16 0 1831.8952 P30101 P30101 380 395 PDIA3 Protein disulfide-isomerase A3 yes yes 2 1.1198E-09 100.55 By MS/MS By matching By MS/MS 2 1 2 1.0501 1.029 73.16 5 Median 1.1373 1.1045 10.016 2 1 Median 1.2036 1.0308 NaN 1 0 Median 0.42677 0.4605 112.12 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29420000 15142000 14277000 4612700 2277700 2335000 2557100 1132900 1424200 22250000 11732000 10518000 0 0 0 0 0 0 0 0 0 38155 2189 40088 202477;202478;202479;202480;202481 205859;205860;205861 205861 3 VVVCGQASVGK ______________________________ KSCKVVVCGQASVGKTSILEQLLYGNHVVG K V V G K T 1 0 0 0 1 1 0 2 0 0 0 1 0 0 0 1 0 0 0 4 0 0 11 0 1102.5805 H7BXP1;Q9NYR9;A0A0A0MTA0;K7EKE9;K7ER26;K7ELL8 H7BXP1 7 17 NKIRAS2 NF-kappa-B inhibitor-interacting Ras-like protein 2 yes no 2 0.030236 31.422 By MS/MS 1 1.0564 0.90297 NaN 1 Median NaN NaN NaN 0 0 Median 1.0564 0.90297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 782670 533930 248740 0 0 0 782670 533930 248740 0 0 0 0 0 0 0 0 0 0 0 0 38156 1243 40089 202482 205862 205862 1 VVVDALSGLK LPPACTRAERREVERVVVDALSGLKGDLAG REVERVVVDALSGLKGDLAGRYYRLSEMTE R V V L K G 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 3 0 0 10 0 999.59645 P12532;F8WCN3;C9JSQ1 P12532 190 199 CKMT1A;CKMT1B Creatine kinase U-type, mitochondrial yes no 2 0.0013144 66.621 By MS/MS By MS/MS By MS/MS 1 1 1 0.91284 0.89805 33.888 3 Median 0.91284 0.84335 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86959 0.89805 NaN 1 0 Median 1.8451 1.5612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39041000 19733000 19308000 17200000 8920100 8280300 0 0 0 19172000 9899100 9273100 2667900 913300 1754600 0 0 0 0 0 0 38157 1982 40090 202483;202484;202485 205863;205864;205865;205866;205867 205866 5 VVVDPVVTEQPSTSSAAK GKTESSSVVRTRSNRVVVDPVVTEQPSTSS DPVVTEQPSTSSAAKTFITKANASAIPGKT R V V A K T 2 0 0 1 0 1 1 0 0 0 0 1 0 0 2 3 2 0 0 5 0 0 18 0 1812.9469 Q8WWQ0 Q8WWQ0 1511 1528 PHIP PH-interacting protein yes yes 2 8.2329E-13 147.18 By MS/MS By MS/MS 2 3 0.72939 0.64005 24.236 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54306 0.54293 23.273 2 0 Median 0.85324 0.73108 19.228 3 2 Median 27000000 16696000 10303000 0 0 0 0 0 0 0 0 0 0 0 0 22117000 13842000 8275500 4882200 2854400 2027800 38158 3512 40091 202486;202487;202488;202489;202490 205868;205869;205870;205871 205868 4 VVVEPPEGEEK IECTQAPAPASEDEKVVVEPPEGEEKVEKA EDEKVVVEPPEGEEKVEKAEVKERTEEPME K V V E K V 0 0 0 0 0 0 4 1 0 0 0 1 0 0 2 0 0 0 0 3 0 0 11 0 1210.6081 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;A0A2R8Y6G9 Q14839 1607 1617 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0039952 68.224 By MS/MS By MS/MS 1 1 0.8456 0.82613 10.785 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98282 0.8916 NaN 1 1 Median 0.72754 0.76548 NaN 1 0 Median NaN NaN NaN 0 0 Median 3060500 1682700 1377700 0 0 0 0 0 0 0 0 0 1662100 845950 816120 1398400 836760 561630 0 0 0 38159 246 40092 202491;202492 205872;205873;205874 205873 3 VVVEPPEGEEKVEK IECTQAPAPASEDEKVVVEPPEGEEKVEKA KVVVEPPEGEEKVEKAEVKERTEEPMETEP K V V E K A 0 0 0 0 0 0 5 1 0 0 0 2 0 0 2 0 0 0 0 4 0 0 14 1 1566.8141 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38;A0A2R8Y6G9 Q14839 1607 1620 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 0.0012342 54.898 By MS/MS By MS/MS By MS/MS 1 6 2 0.57337 0.54923 37.06 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36788 0.42712 NaN 1 1 Median 0.72005 0.70341 35.77 5 2 Median 0.44785 0.48035 4.4004 2 2 Median NaN NaN NaN 0 0 Median 57354000 36592000 20762000 0 0 0 0 0 0 27005000 18458000 8546200 19891000 11121000 8770200 10458000 7012800 3445500 0 0 0 38160 246 40093 202493;202494;202495;202496;202497;202498;202499;202500;202501 205875;205876;205877;205878;205879;205880;205881;205882 205875 8 VVVEPVGPVGFKPETFRK LLYQHFWCLPVIKKRVVVEPVGPVGFKPET EPVGPVGFKPETFRKFLALYLHGAA_____ R V V R K F 0 1 0 0 0 0 2 2 0 0 0 2 0 2 3 0 1 0 0 5 0 0 18 2 1984.1146 Q9BZE1;A6NHR2 Q9BZE1 396 413 MRPL37 39S ribosomal protein L37, mitochondrial yes no 4 0.0053241 25.167 By MS/MS 1 0.71322 0.75513 NaN 1 Median 0.71322 0.75513 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6982900 4093100 2889900 6982900 4093100 2889900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38161 3897 40094 202502 205883 205883 1 VVVEYLR KKPYKKRMTAEAHRRVVVEYLRAVMQKRIS MTAEAHRRVVVEYLRAVMQKRISFRSPEER R V V L R A 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 3 0 0 7 0 876.5069 O60645 O60645 602 608 EXOC3 Exocyst complex component 3 yes yes 2 0.013187 76.847 By matching By matching By MS/MS By matching By matching 1 1 1 1 1 1.3752 1.1307 43.931 5 Median 1.4133 1.3837 NaN 1 0 Median 2.1739 1.969 NaN 1 0 Median 0.93693 0.97925 NaN 1 0 Median 0.67637 0.59933 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3752 1.1307 NaN 1 0 Median 9877100 4468700 5408400 2688100 950710 1737400 910550 324500 586050 5361300 2766600 2594700 429360 271000 158350 0 0 0 487770 155890 331880 38162 1623 40095 202503;202504;202505;202506;202507 205884 205884 1 VVVFIKPTCPYCR ______________________________ GKVVVFIKPTCPYCRRAQEILSQLPIKQGL K V V C R R 0 1 0 0 2 0 0 0 0 1 0 1 0 1 2 0 1 0 1 3 0 0 13 1 1637.8422 P35754 P35754 15 27 GLRX Glutaredoxin-1 yes yes 3 0.00048406 52.555 By matching By MS/MS 1 2 0.92738 0.90938 11.882 3 Median 0.92738 0.90938 NaN 1 0 Median 0.9965 0.87088 16.429 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21921000 11194000 10726000 3424400 1772900 1651500 18496000 9421400 9074900 0 0 0 0 0 0 0 0 0 0 0 0 38163 2250 40096 202508;202509;202510 205885 205885 1 VVVHKETEITPEDGED IKEAKEQHPDMSVTKVVVHKETEITPEDGE VVHKETEITPEDGED_______________ K V V E D - 0 0 0 2 0 0 4 1 1 1 0 1 0 0 1 0 2 0 0 3 0 0 16 1 1795.8476 A0A0A0MRA8;Q9Y2J2;A0A0A0MSA4;A8K968 A0A0A0MRA8 903 918 EPB41L3 Band 4.1-like protein 3;Band 4.1-like protein 3, N-terminally processed yes no 3 0.067238 10.057 By MS/MS 1 0.68221 0.68273 NaN 1 Median 0.68221 0.68273 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1849500 894960 954530 1849500 894960 954530 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38164 156 40097 202511 205886 205886 1 VVVHKETELAEEGED IREAREQHPDMSVTRVVVHKETELAEEGED VVVHKETELAEEGED_______________ R V V E D - 1 0 0 1 0 0 5 1 1 0 1 1 0 0 0 0 1 0 0 3 0 0 15 1 1682.7999 O43491;E9PHY5;E9PK52;E9PII3;Q6ZSX4;Q6R5J7;E9PPC9 O43491 991 1005 EPB41L2 Band 4.1-like protein 2 yes no 2;3 0.00016887 48.704 By matching By matching By MS/MS 2 1 2 0.98652 1.0425 14.511 5 Median 1.1463 1.1169 9.7455 2 0 Median 0.9419 0.80638 NaN 1 0 Median 0.95565 1.0285 5.6284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30345000 14805000 15541000 11612000 5147600 6463900 500350 219750 280600 18234000 9437300 8796200 0 0 0 0 0 0 0 0 0 38165 1573 40098 202512;202513;202514;202515;202516 205887;205888;205889 205889 3 VVVHPLVLLSVVDHFNR ______________________________ VHPLVLLSVVDHFNRIGKVGNQKRVVGVLL K V V N R I 0 1 1 1 0 0 0 0 2 0 3 0 0 1 1 1 0 0 0 6 0 0 17 0 1942.1153 P51665;H3BNT7;H3BTM8;H3BQV2 P51665 9 25 PSMD7 26S proteasome non-ATPase regulatory subunit 7 yes no 2;3 2.2387E-10 101.95 By MS/MS By MS/MS 1 2 1.253 0.89401 16.354 3 Plateau 0.89824 0.89401 NaN 1 0 Median 1.0745 0.93599 22.822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65217000 31984000 33233000 3710500 2005500 1705000 61507000 29979000 31528000 0 0 0 0 0 0 0 0 0 0 0 0 38166 2440 40099 202517;202518;202519 205890;205891;205892;205893;205894;205895;205896 205892 7 VVVHQETEIADE IKEAKEQHPDMSVTKVVVHQETEIADE___ VTKVVVHQETEIADE_______________ K V V D E - 1 0 0 1 0 1 3 0 1 1 0 0 0 0 0 0 1 0 0 3 0 0 12 0 1367.6569 P11171;A0A2R8Y7Y3;A0A2U3TZH6;Q4VB86;A0A2R8YD30;A0A3B3ITP0 P11171 853 864 EPB41 Protein 4.1 yes no 2 0.00031754 98.033 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2225500 0 0 1308600 0 0 0 0 0 0 0 0 916870 0 0 0 0 0 0 0 0 38167 385 40100 202520;202521 205897;205898 205898 2 VVVLGLLPR KAIVQLVNERQPQARVVVLGLLPRGQHPNP RQPQARVVVLGLLPRGQHPNPLREKNRQVN R V V P R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 3 0 0 9 0 964.64334 Q15102;M0R389 Q15102 133 141 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes no 2 0.00096605 88.029 By MS/MS By MS/MS By MS/MS By matching By matching 3 1 1 1 1 0.92603 0.87428 19.248 7 Median 0.85958 0.81801 10.254 3 0 Median 1.0333 0.87428 NaN 1 0 Median 0.87207 0.83251 NaN 1 0 Median 1.1681 0.94636 NaN 1 0 Median 1.3712 1.3397 NaN 1 0 Median NaN NaN NaN 0 0 Median 113380000 58982000 54397000 73696000 39733000 33963000 34557000 16752000 17805000 3749900 1952100 1797800 76418 35181 41237 1299700 509650 790050 0 0 0 38168 2928 40101 202522;202523;202524;202525;202526;202527;202528 205899;205900;205901;205902;205903;205904 205900 6 VVVLGSGGVGK ______________________________ REYKVVVLGSGGVGKSALTVQFVTGSFIEK K V V G K S 0 0 0 0 0 0 0 4 0 0 1 1 0 0 0 1 0 0 0 4 0 0 11 0 970.58113 Q9Y3L5;F6U784;P10114;P61225 P61225 6 16 RAP2C;RAP2A;RAP2B Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b no no 2 0.00015396 97.431 By MS/MS By MS/MS By matching 2 1 1 1.1932 1.128 6.5323 4 Median 1.1313 1.0608 2.7229 2 0 Median 1.389 1.1904 NaN 1 0 Median 1.2234 1.1767 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17557000 7360600 10196000 7937700 3533000 4404600 7518200 3170200 4348100 2100700 657370 1443300 0 0 0 0 0 0 0 0 0 38169 2552;4431 40102 202529;202530;202531;202532 205905;205906;205907;205908 205908 4 VVVLGTPAEEDGGGK RGALEGLPRPPPPVKVVVLGTPAEEDGGGK VVVLGTPAEEDGGGKIDLIEAGAFTNLDVV K V V G K I 1 0 0 1 0 0 2 4 0 0 1 1 0 0 1 0 1 0 0 3 0 0 15 0 1426.7304 Q8IYS1 Q8IYS1 156 170 PM20D2 Peptidase M20 domain-containing protein 2 yes yes 2 6.3939E-08 149.23 By matching By MS/MS 1 1 0.69719 0.63915 7.2087 2 Median NaN NaN NaN 0 0 Median 0.71249 0.60738 NaN 1 0 Median 0.68223 0.67257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8932700 5642200 3290500 0 0 0 3935300 2223100 1712100 4997400 3419100 1578300 0 0 0 0 0 0 0 0 0 38170 3345 40103 202533;202534 205909 205909 1 VVVLPFPSK SLDVSFLFQEPMEEKVVVLPFPSKEQRSAE EPMEEKVVVLPFPSKEQRSAECPGPAQKGY K V V S K E 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 3 0 0 9 0 984.6008 CON__Q58D62 CON__Q58D62 358 366 yes yes 2 0.00056821 94.302 By MS/MS By MS/MS 1 1 0.014392 0.013411 NaN 1 Median 0.014392 0.013411 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10504000 10366000 137450 9415300 9277800 137450 0 0 0 1088400 1088400 0 0 0 0 0 0 0 0 0 0 + 38171 784 40104 202535;202536 205910;205911 205910 2 VVVPELSAGVASR SEIATERDLVAWSRRVVVPELSAGVASRQE RRVVVPELSAGVASRQEEWRTAKGEEEIKT R V V S R Q 2 1 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 13 0 1282.7245 Q8WWQ0 Q8WWQ0 723 735 PHIP PH-interacting protein yes yes 2 3.4687E-05 91.549 By MS/MS By matching 1 1 0.89412 0.83694 24.108 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67534 0.70577 NaN 1 0 Median 1.1838 0.99249 NaN 1 0 Median 5982900 3253100 2729800 0 0 0 0 0 0 0 0 0 0 0 0 5093300 2833400 2259900 889560 419650 469910 38172 3512 40105 202537;202538 205912;205913 205913 2 VVVPPLPGK SDFEWLRSELERESKVVVPPLPGKAFLRQL LERESKVVVPPLPGKAFLRQLPFRGDDGIF K V V G K A 0 0 0 0 0 0 0 1 0 0 1 1 0 0 3 0 0 0 0 3 0 0 9 0 904.57459 O60493 O60493 87 95 SNX3 Sorting nexin-3 yes yes 2 0.0034888 64.757 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 2 1 0.75184 0.64403 21.72 8 Median 0.67575 0.63135 1.1465 2 0 Median 0.74265 0.63503 NaN 1 0 Median 0.76901 0.74891 3.7717 2 0 Median 0.84746 0.7002 10.161 2 0 Median NaN NaN NaN 0 0 Median 0.4718 0.38718 NaN 1 0 Median 62954000 36248000 26706000 32247000 19160000 13087000 14973000 8420000 6553500 9877800 5464700 4413100 5710000 3115700 2594300 0 0 0 146220 88365 57857 38173 1616 40106 202539;202540;202541;202542;202543;202544;202545;202546 205914;205915;205916;205917;205918;205919;205920;205921;205922 205915 9 VVVQGIPEVSR SMYYVLQFLKEDLPKVVVQGIPEVSRAVIH DLPKVVVQGIPEVSRAVIHIDEQSGKEKYK K V V S R A 0 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 0 4 0 0 11 0 1181.6768 O14802;Q7Z755 O14802 1199 1209 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes no 2 1.0824E-05 96.331 By MS/MS By matching 1 1 1.1105 1.0273 5.227 2 Median 1.0983 1.066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1229 0.99003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4794400 2137200 2657200 3753600 1661200 2092400 0 0 0 0 0 0 1040700 476000 564740 0 0 0 0 0 0 38174 1496 40107 202547;202548 205923 205923 0 VVVQVLAEEPEAVLK EDAFRYMAQGKHIGKVVVQVLAEEPEAVLK VVVQVLAEEPEAVLKGAKPKLMSAISKTFC K V V L K G 2 0 0 0 0 1 3 0 0 0 2 1 0 0 1 0 0 0 0 5 0 0 15 0 1621.9291 P49327;A0A0U1RQF0 P49327 1852 1866 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 8.1661E-10 111.86 By MS/MS By MS/MS By MS/MS By matching 6 5 1 1 1.104 1.0008 13.851 13 Median 0.90787 0.88288 15.819 6 0 Median 1.2077 1.0776 5.3173 5 0 Median 1.0073 1.1227 NaN 1 0 Median 1.2098 1.0957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 257890000 120120000 137770000 92841000 47632000 45209000 161370000 70602000 90765000 3589300 1844000 1745400 91565 38254 53312 0 0 0 0 0 0 38175 2377 40108 202549;202550;202551;202552;202553;202554;202555;202556;202557;202558;202559;202560;202561 205924;205925;205926;205927;205928;205929;205930;205931;205932;205933;205934;205935 205927 12 VVVSGLPPSGSWQDLK PRGRYGPPSRRSENRVVVSGLPPSGSWQDL VVSGLPPSGSWQDLKDHMREAGDVCYADVY R V V L K D 0 0 0 1 0 1 0 2 0 0 2 1 0 0 2 3 0 1 0 3 0 0 16 0 1667.8883 J3KTL2;Q07955;J3KSR8 J3KTL2 123 138 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 2.0633E-10 111.52 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 1 2 0.94274 0.81985 9.3538 8 Median 0.98697 0.94082 NaN 1 0 Median 0.99942 0.84692 NaN 1 0 Median 0.72443 0.71891 2.2161 2 0 Median 0.99759 0.85426 NaN 1 0 Median 0.79472 0.81051 NaN 1 0 Median 0.94274 0.79211 6.4889 2 0 Median 41168000 21505000 19662000 5220400 2430700 2789700 1125800 584850 541000 16027000 8625400 7401900 499830 217990 281840 14972000 7970900 7000700 3322600 1675500 1647100 38176 1337 40109 202562;202563;202564;202565;202566;202567;202568;202569 205936;205937;205938;205939;205940;205941;205942;205943;205944;205945;205946;205947;205948;205949;205950;205951 205939 16 VVVSGLPPSGSWQDLKDHMR PRGRYGPPSRRSENRVVVSGLPPSGSWQDL LPPSGSWQDLKDHMREAGDVCYADVYRDGT R V V M R E 0 1 0 2 0 1 0 2 1 0 2 1 1 0 2 3 0 1 0 3 0 0 20 1 2207.1157 J3KTL2;Q07955;J3KSR8 J3KTL2 123 142 SRSF1 Serine/arginine-rich splicing factor 1 yes no 3;4 1.1604E-09 85.146 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 6 1 0.83926 0.86859 9.7241 12 Median 0.83926 0.84249 4.5272 2 0 Median 1.1436 1.0418 NaN 1 0 Median 0.72747 0.79151 NaN 1 0 Median 0.96969 0.91511 NaN 1 0 Median 0.79695 0.85724 10.636 6 0 Median 0.9593 0.8673 NaN 1 0 Median 93075000 49580000 43495000 23051000 11298000 11753000 1417100 670840 746210 5144300 2792800 2351500 986870 454150 532720 60960000 33667000 27294000 1516100 698090 818060 38177 1337 40110 202570;202571;202572;202573;202574;202575;202576;202577;202578;202579;202580;202581 205952;205953;205954;205955;205956;205957;205958;205959;205960;205961;205962;205963;205964;205965;205966 205953 15 VVVTDDSDER LDVLNPETSEDENDRVVVTDDSDERRLKGA DENDRVVVTDDSDERRLKGAEDKSEEGEDN R V V E R R 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 3 0 0 10 0 1133.52 Q9BQG0;I3L1L3 Q9BQG0 705 714 MYBBP1A Myb-binding protein 1A yes no 2 0.00036244 99.802 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 2 1 1.0321 1.0068 21.649 9 Median 1.7836 1.7581 NaN 1 0 Median 1.1247 0.94551 NaN 1 0 Median 1.0212 1.1032 3.9557 2 0 Median 1.0513 0.91204 2.1692 2 0 Median 0.97303 1.0283 2.9793 2 0 Median 0.9907 0.83947 NaN 1 0 Median 18970000 8847100 10122000 273950 81447 192510 6469500 3023400 3446100 4446800 1948200 2498600 2458000 1206000 1252000 5170500 2510300 2660200 150910 77796 73117 38178 3789 40111 202582;202583;202584;202585;202586;202587;202588;202589;202590 205967;205968;205969;205970;205971;205972;205973;205974;205975;205976;205977;205978;205979 205971 13 VVVTDDSDERR LDVLNPETSEDENDRVVVTDDSDERRLKGA ENDRVVVTDDSDERRLKGAEDKSEEGEDNR R V V R R L 0 2 0 3 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 3 0 0 11 1 1289.6212 Q9BQG0;I3L1L3 Q9BQG0 705 715 MYBBP1A Myb-binding protein 1A yes no 2;3 7.5213E-05 72.2 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 4 1.066 1.098 9.0783 13 Median NaN NaN NaN 0 0 Median 1.1386 1.0977 3.9412 2 0 Median 1.066 1.2965 8.4179 3 0 Median 1.1639 1.0823 4.7509 4 0 Median 1.0229 1.1062 3.5123 4 0 Linear NaN NaN NaN 0 0 Median 10892000 5131100 5761200 0 0 0 4221000 1932900 2288100 2249700 1076400 1173300 791080 324750 466330 3630500 1797000 1833400 0 0 0 38179 3789 40112 202591;202592;202593;202594;202595;202596;202597;202598;202599;202600;202601;202602;202603 205980;205981;205982;205983;205984;205985;205986 205985 7 VVVTEVKEEDAFYSK ECKGGDEEENDEPPKVVVTEVKEEDAFYSK VVVTEVKEEDAFYSKKCKLFYKKDNEFKEK K V V S K K 1 0 0 1 0 0 3 0 0 0 0 2 0 1 0 1 1 0 1 4 0 0 15 1 1741.8774 Q9UKX7;B0QY21 Q9UKX7 347 361 NUP50 Nuclear pore complex protein Nup50 yes no 3 0.00010864 54.7 By MS/MS 1 0.96153 1.0041 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96153 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10769000 5309500 5459800 0 0 0 0 0 0 10769000 5309500 5459800 0 0 0 0 0 0 0 0 0 38180 4317 40113 202604 205987 205987 1 VVVTMEHSAK GMGGAMDLVSSAKTKVVVTMEHSAKGNAHK SAKTKVVVTMEHSAKGNAHKIMEKCTLPLT K V V A K G 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 3 0 0 10 0 1099.5696 P55809;E9PDW2 P55809 437 446 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes no 2 0.037233 31.934 By MS/MS By matching 2 1 1.2913 1.2197 22.974 3 Median 1.122 1.0825 16.878 2 0 Median 1.7799 1.5209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3899100 1530000 2369100 919830 414120 505700 2979200 1115900 1863400 0 0 0 0 0 0 0 0 0 0 0 0 38181 2503 40114 202605;202606;202607 205988 205988 1 VVVTVEQTEEELER YLEKEEKCLPPPSIRVVVTVEQTEEELERA RVVVTVEQTEEELERAASTIKEVAQAVLL_ R V V E R A 0 1 0 0 0 1 5 0 0 0 1 0 0 0 0 0 2 0 0 4 0 0 14 0 1658.8363 O15269 O15269 446 459 SPTLC1 Serine palmitoyltransferase 1 yes yes 2 3.5512E-11 175.86 By matching By MS/MS By matching By matching 1 1 1 1 1.0913 0.85523 25.843 4 Linear NaN NaN NaN 0 0 Median 0.9074 0.79046 NaN 1 0 Median 1.0243 1.0179 NaN 1 0 Median 0.84754 0.92529 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63867 0.56479 NaN 1 0 Median 9263900 5198400 4065600 0 0 0 1180600 672980 507600 7402400 4155000 3247400 521850 272120 249730 0 0 0 159070 98222 60843 38182 1536 40115 202608;202609;202610;202611 205989;205990 205990 2 VVVVDSRPWLEGR SRILQEAWTEGRRFRVVVVDSRPWLEGRHT FRVVVVDSRPWLEGRHTLRSLVHAGVPASY R V V G R H 0 2 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 1 0 4 0 0 13 1 1510.8256 A0A087WTA5;E7ERK9;Q9UI10 A0A087WTA5 355 367 EIF2B4 Translation initiation factor eIF-2B subunit delta yes no 3 0.0011756 43.382 By MS/MS By matching By matching 2 1 1 1.022 0.98504 9.6741 4 Median 0.96167 0.95038 1.2771 2 0 Median NaN NaN NaN 0 0 Median 1.0796 1.1661 NaN 1 0 Median 1.0997 1.0118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9491200 4612300 4878900 6654600 3301700 3353000 0 0 0 2619400 1222100 1397300 217140 88540 128600 0 0 0 0 0 0 38183 16 40116 202612;202613;202614;202615 205991 205991 1 VVVVEQNGSFQVK DSLSEASHSKKTVKKVVVVEQNGSFQVKIP KKVVVVEQNGSFQVKIPKNFVCEHCFGAFR K V V V K I 0 0 1 0 0 2 1 1 0 0 0 1 0 1 0 1 0 0 0 5 0 0 13 0 1431.7722 Q8NDX6 Q8NDX6 84 96 ZNF740 Zinc finger protein 740 yes yes 2 1.3668E-05 87.913 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38184 3426 40117 202616 205992 205992 1 VVVVGDQSAGK SDYDASYNTQDHLPRVVVVGDQSAGKTSVL HLPRVVVVGDQSAGKTSVLEMIAQARIFPR R V V G K T 1 0 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 4 0 0 11 0 1057.5768 A0A2R8Y3X5;E5KLJ9;O60313;A0A2R8YE78;A0A2R8YDM2;C9JMB8;A0A2R8YGE5;A0A2R8YD53;A0A2R8Y4Q3;A0A2R8Y4G4;A0A2R8YE54 A0A2R8Y3X5 185 195 OPA1 Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1 yes no 2 0.00071474 64.04 By matching By MS/MS 1 1 1.396 1.3079 34.792 2 Median 1.0231 1.0226 NaN 1 0 Median 1.9049 1.6726 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4884900 2052400 2832500 1491100 663700 827450 3393700 1388700 2005000 0 0 0 0 0 0 0 0 0 0 0 0 38185 357 40118 202617;202618 205993;205994 205993 2 VVVVTAEK SAIGCQLGRDPHGLRVVVVTAEKIVHRYYS RDPHGLRVVVVTAEKIVHRYYSLDELSEKG R V V E K I 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 4 0 0 8 0 843.50657 Q9BRF8 Q9BRF8 280 287 CPPED1 Serine/threonine-protein phosphatase CPPED1 yes yes 2 0.011309 73.26 By MS/MS By MS/MS 1 1 1.1613 1.0564 14.547 2 Median 1.191 1.1709 NaN 1 0 Median 1.1323 0.95317 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4931600 2135300 2796300 2057100 886390 1170700 2874500 1248900 1625600 0 0 0 0 0 0 0 0 0 0 0 0 38186 3794 40119 202619;202620 205995;205996;205997 205996 3 VVVVTGANTGIGK LSSGVCTSTVQLPGKVVVVTGANTGIGKET GKVVVVTGANTGIGKETAKELAQRGARVYL K V V G K E 1 0 1 0 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 4 0 0 13 0 1213.703 Q8TC12;G3V2G6;G3V234 Q8TC12 43 55 RDH11 Retinol dehydrogenase 11 yes no 2 5.9879E-07 105.86 By MS/MS By MS/MS 1 1 1.3358 1.1671 11.357 2 Median 1.1857 1.0771 NaN 1 0 Median 1.5049 1.2647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27905000 14460000 13445000 20570000 10121000 10449000 7334900 4339000 2995900 0 0 0 0 0 0 0 0 0 0 0 0 38187 3464 40120 202621;202622 205998;205999;206000;206001 205999 4 VVVVVPNEEDWK GQRRKLLLFKTFSRKVVVVVPNEEDWKKRL SRKVVVVVPNEEDWKKRLELRKEVEGDDVP K V V W K K 0 0 1 1 0 0 2 0 0 0 0 1 0 0 1 0 0 1 0 5 0 0 12 0 1411.7347 Q1KMD3;H3BQZ7 Q1KMD3 559 570 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.00015076 87.913 By matching By matching By MS/MS By matching 1 1 1 1 0.76397 0.77823 33.707 4 Median 0.73107 0.73492 NaN 1 0 Median 0.50361 0.533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79835 0.82409 NaN 1 0 Median 1.4433 1.2061 NaN 1 0 Median 7178300 4258200 2920000 1191000 795640 395350 349840 288190 61652 0 0 0 0 0 0 5179600 2978400 2201200 457810 196000 261810 38188 3002 40121 202623;202624;202625;202626 206002 206002 1 VVWVEESDKR AVGRVGSTSENITQKVVWVEESDKRSFLLD NITQKVVWVEESDKRSFLLDLLNATGKDSL K V V K R S 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 1 0 3 0 0 10 1 1245.6354 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5 A0A2U3TZJ9 418 427 DDX3X ATP-dependent RNA helicase DDX3X yes no 2;3 8.1267E-05 119.27 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 3 3 5 6 1.1346 1.0729 23.256 22 Median 1.0279 1.0444 3.5915 4 0 Median 1.1316 1.0279 6.1298 2 0 Median 1.2217 1.3013 8.2641 3 0 Plateau 1.1889 1.1177 4.5637 3 0 Median 1.3399 1.462 16.458 4 1 Linear 1.0907 0.9607 32.549 6 0 Median 248340000 112090000 136250000 38173000 18194000 19979000 46902000 21698000 25203000 73791000 31235000 42556000 11334000 5153600 6180000 53031000 23946000 29085000 25106000 11864000 13242000 38189 263 40122 202627;202628;202629;202630;202631;202632;202633;202634;202635;202636;202637;202638;202639;202640;202641;202642;202643;202644;202645;202646;202647;202648;202649 206003;206004;206005;206006;206007;206008;206009;206010;206011;206012;206013;206014;206015;206016;206017;206018;206019;206020;206021;206022;206023;206024;206025;206026;206027;206028;206029;206030;206031;206032;206033 206011 31 VVYENAYGQFIGPHR GSLNWGYRVALREKKVVYENAYGQFIGPHR VVYENAYGQFIGPHRIKATNNKGKEKIYSA K V V H R I 1 1 1 0 0 1 1 2 1 1 0 0 0 1 1 0 0 0 2 2 0 0 15 0 1748.8635 E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881;E2QRB9;E9PKD3 E9PIR7 125 139 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes no 2;3 7.519E-07 87.498 By MS/MS By matching By MS/MS 2 1 1 1.0513 0.95784 89.862 4 Median 1.3985 1.3388 0.20801 2 1 Median 0.79883 0.68629 NaN 1 0 Median 0.20097 0.19905 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59238000 38101000 21137000 28139000 11890000 16248000 2468000 1353100 1114900 28631000 24858000 3773400 0 0 0 0 0 0 0 0 0 38190 11 40123 202650;202651;202652;202653 206034;206035;206036;206037 206036 4 VVYFGDSMHSDIFPAR LYELLKKMTGKPEPKVVYFGDSMHSDIFPA VYFGDSMHSDIFPARHYSNWETVLILEELR K V V A R H 1 1 0 2 0 0 0 1 1 1 0 0 1 2 1 2 0 0 1 2 0 0 16 0 1839.8614 Q5TFE4 Q5TFE4 308 323 NT5DC1 5-nucleotidase domain-containing protein 1 yes yes 2 0.0019502 37.681 By MS/MS By matching 1 1 0.93452 0.86391 7.6225 2 Median 0.83541 0.81858 NaN 1 0 Median 1.0454 0.91176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6181700 2597700 3584000 5259900 2052500 3207400 921770 545170 376600 0 0 0 0 0 0 0 0 0 0 0 0 38191 3105 40124 202654;202655 206038 206038 1 VVYIFGPPVK FLARLIPRMCHNVNRVVYIFGPPVKEPPTD HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV R V V V K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 1 3 0 0 10 0 1117.6536 P49915 P49915 560 569 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.00041811 88.942 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.85611 0.77238 6.5895 5 Median 0.77382 0.70874 NaN 1 0 Median 0.85611 0.72767 NaN 1 0 Median 0.76675 0.77238 NaN 1 0 Median 0.9473 0.81807 0.17056 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28618000 16298000 12319000 8111500 4583800 3527700 4728200 2646000 2082200 14208000 8252700 5955400 1569900 815820 754120 0 0 0 0 0 0 38192 2405 40125 202656;202657;202658;202659;202660 206039;206040;206041;206042;206043 206040 5 VVYIFGPPVKEPPTDVTPTFLTTGVLSTLR FLARLIPRMCHNVNRVVYIFGPPVKEPPTD VTPTFLTTGVLSTLRQADFEAHNILRESGY R V V L R Q 0 1 0 1 0 0 1 2 0 1 3 1 0 2 5 1 6 0 1 5 0 0 30 1 3243.7795 P49915 P49915 560 589 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 4.9511E-21 68.76 By MS/MS By MS/MS By matching 2 1 1 0.44085 0.46138 6.9061 4 Median 0.43489 0.44356 9.9897 2 0 Median 0.5186 0.47969 NaN 1 1 Median 0.41872 0.44719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7895600 5251100 2644400 6872100 4488100 2384000 775890 606040 169840 247570 157020 90553 0 0 0 0 0 0 0 0 0 38193 2405 40126 202661;202662;202663;202664 206044;206045;206046;206047 206045 4 VVYKNPSEYHYMK ______________________________ ERVVYKNPSEYHYMKVCLEFQDCGVGLNAA R V V M K V 0 0 1 0 0 0 1 0 1 0 0 2 1 0 1 1 0 0 3 2 0 0 13 1 1656.797 O95059 O95059 11 23 RPP14 Ribonuclease P protein subunit p14 yes yes 3 0.034931 20.124 By matching By MS/MS 1 1 1.0917 0.98364 2.2762 2 Median 1.0336 0.96794 NaN 1 0 Median 1.1531 0.9996 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4412200 1913100 2499100 1243600 602030 641520 3168700 1311100 1857600 0 0 0 0 0 0 0 0 0 0 0 0 38194 1742 40127 202665;202666 206048 206048 1 VVYNVLSELEK EDSQDSCRNLVPVQRVVYNVLSELEKTFNL PVQRVVYNVLSELEKTFNLPVLEALFSDVN R V V E K T 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 1 3 0 0 11 0 1291.7024 P23497;C9JBL0;E9PHV6;H7BYP4;U5Y3L1;Q9H930 P23497 105 115 SP100;SP140L Nuclear autoantigen Sp-100;Nuclear body protein SP140-like protein yes no 2 0.0076328 42.001 By MS/MS By matching By matching 2 1 3 1.0291 1.0485 29.086 6 Median NaN NaN NaN 0 0 Median 0.95813 0.83315 49.136 2 0 Median 1.1104 1.2377 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0002 1.0449 19.59 3 0 Median NaN NaN NaN 0 0 Median 21604000 12397000 9206600 0 0 0 4261200 2404600 1856600 2662500 1310300 1352200 0 0 0 14680000 8682500 5997700 0 0 0 38195 2114 40128 202667;202668;202669;202670;202671;202672 206049 206049 1 VVYPLEK QWLYDNHKDESYLRRVVYPLEKLLTSHKRL KDESYLRRVVYPLEKLLTSHKRLVMKDSAV R V V E K L 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 7 0 846.48511 O60832;C9IYT0;H7C2Q2 O60832 285 291 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes no 2 0.061015 47.916 By MS/MS 1 0.8803 0.90052 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8803 0.90052 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3216500 1807500 1409000 0 0 0 0 0 0 3216500 1807500 1409000 0 0 0 0 0 0 0 0 0 38196 1634 40129 202673 206050 206050 1 VVYSAFLMATPR PLHRGGGQIIPTARRVVYSAFLMATPRLME ARRVVYSAFLMATPRLMEPYYFVEVQAPAD R V V P R L 2 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 0 12 0 1353.7115 Q15029 Q15029 815 826 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.00014004 88.681 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 0.8817 0.92936 9.4761 5 Median 0.92955 0.92936 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75955 0.81864 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8817 0.93833 NaN 1 0 Median 0.98973 0.85603 14.862 2 0 Median 4625700 2263800 2361900 1448900 682260 766660 0 0 0 995500 565000 430500 0 0 0 1857300 847670 1009600 324020 168890 155130 38197 2917 40130 202674;202675;202676;202677;202678;202679 206051;206052;206053;206054;206055;206056;206057 206053 7 VVYVDGKEEIR VHKIEFEHGTTSGKRVVYVDGKEEIRKEWM SGKRVVYVDGKEEIRKEWMFKLVGKETFYV R V V I R K 0 1 0 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 1 3 0 0 11 1 1305.6929 C9JDZ2;Q9NVQ4 C9JDZ2 31 41 FAIM Fas apoptotic inhibitory molecule 1 yes no 3 0.00026194 62.466 By matching By MS/MS 1 1 0.78677 0.73633 14.221 2 Median 0.82006 0.81422 NaN 1 0 Median 0.75483 0.66588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2249300 1273500 975880 1099200 567280 531910 1150200 706180 443970 0 0 0 0 0 0 0 0 0 0 0 0 38198 691 40131 202680;202681 206058 206058 1 VVYVDGKEEIRK VHKIEFEHGTTSGKRVVYVDGKEEIRKEWM GKRVVYVDGKEEIRKEWMFKLVGKETFYVG R V V R K E 0 1 0 1 0 0 2 1 0 1 0 2 0 0 0 0 0 0 1 3 0 0 12 2 1433.7878 C9JDZ2;Q9NVQ4 C9JDZ2 31 42 FAIM Fas apoptotic inhibitory molecule 1 yes no 2;3 0.00018031 75.479 By MS/MS By MS/MS 1 2 1.0735 1.1134 18.751 2 Median 1.2093 1.2712 NaN 1 0 Median 0.953 0.97512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9754800 5026900 4727900 3070700 1394400 1676300 6684000 3632500 3051600 0 0 0 0 0 0 0 0 0 0 0 0 38199 691 40132 202682;202683;202684 206059;206060;206061;206062 206061 4 VWAEYALK RYIQPWESEFIDSQRVWAEYALKRQEAIAQ EFIDSQRVWAEYALKRQEAIAQNRRLTLED R V W L K R 2 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 8 0 978.51747 Q6P2Q9 Q6P2Q9 1385 1392 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.005111 77.674 By MS/MS By MS/MS By matching 2 2 1 0.88721 0.88553 33.574 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0472 1.1531 41.68 2 0 Median 0.88111 0.80271 18.226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30434000 18565000 11869000 0 0 0 0 0 0 21252000 11007000 10245000 2868400 1458800 1409600 6314000 6098900 215170 0 0 0 38200 3157 40133 202685;202686;202687;202688;202689 206063;206064;206065 206064 3 VWAHYEEQPVEEVMPVLEEK SLLSAEEAAKQKKEKVWAHYEEQPVEEVMP EEQPVEEVMPVLEEKERSASYKPVFVTEIT K V W E K E 1 0 0 0 0 1 6 0 1 0 1 1 1 0 2 0 0 1 1 4 0 0 20 0 2440.1621 Q7KZF4 Q7KZF4 657 676 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.026281 13.872 By matching By MS/MS By matching 1 1 1 0.83203 0.75731 15.211 3 Median 0.68527 0.67923 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83203 0.91727 NaN 1 0 Median 0.89208 0.75731 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8419600 4750000 3669600 2668000 1674800 993160 0 0 0 5293900 2838200 2455600 457710 236960 220750 0 0 0 0 0 0 38201 3214 40134 202690;202691;202692 206066 206066 1 VWDAVSGDELMTLAHK DATKAATAAADFTAKVWDAVSGDELMTLAH WDAVSGDELMTLAHKHIVKTVDFTQDSNYL K V W H K H 2 0 0 2 0 0 1 1 1 0 2 1 1 0 0 1 1 1 0 2 0 0 16 0 1770.8611 Q9Y3F4 Q9Y3F4 85 100 STRAP Serine-threonine kinase receptor-associated protein yes yes 3 3.6157E-05 54.598 By MS/MS By MS/MS By matching 1 2 1 1.2497 1.1643 11.356 4 Median 1.2221 1.1253 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2899 1.2828 8.8934 2 0 Median 1.2404 1.0458 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46439000 19246000 27193000 31676000 13417000 18258000 0 0 0 13746000 5397200 8348500 1017300 431700 585630 0 0 0 0 0 0 38202 4429 40135 202693;202694;202695;202696 206067;206068;206069;206070;206071 206070 5 VWDDGIIDPADTR KKFEEEGNPYYSSARVWDDGIIDPADTRLV ARVWDDGIIDPADTRLVLGLSFSAALNAPI R V W T R L 1 1 0 4 0 0 0 1 0 2 0 0 0 0 1 0 1 1 0 1 0 0 13 0 1471.6943 Q9HCC0 Q9HCC0 526 538 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes yes 2 0.013272 51.092 By MS/MS 1 4.0381 3.8398 NaN 1 Median 4.0381 3.8398 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11414000 1968300 9446100 11414000 1968300 9446100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38203 4027 40136 202697 206072 206072 1 VWDISTVSSVNEAFGR LPFIYAFGGQKEGLRVWDISTVSSVNEAFG WDISTVSSVNEAFGRRERLVLGSARNSSIS R V W G R R 1 1 1 1 0 0 1 1 0 1 0 0 0 1 0 3 1 1 0 3 0 0 16 0 1765.8635 B4DJV5;Q13610 B4DJV5 395 410 PWP1 Periodic tryptophan protein 1 homolog yes no 2 0.022527 39.266 By MS/MS 1 1.3032 1.3154 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3032 1.3154 NaN 1 1 Median NaN NaN NaN 0 0 Median 1388500 614810 773680 0 0 0 0 0 0 0 0 0 0 0 0 1388500 614810 773680 0 0 0 38204 595 40137 202698 206073 206073 1 VWDLAQQVVLSSYR SGTQAVSGSKDICIKVWDLAQQVVLSSYRA KVWDLAQQVVLSSYRAHAAQVTCVAASPHK K V W Y R A 1 1 0 1 0 2 0 0 0 0 2 0 0 0 0 2 0 1 1 3 0 0 14 0 1662.873 Q9BQA1;H0Y711 Q9BQA1 151 164 WDR77 Methylosome protein 50 yes no 2 9.3617E-08 98.353 By MS/MS By matching 1 1 1.2898 1.1906 18.622 2 Median 1.3498 1.3581 NaN 1 0 Median 1.2325 1.0437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2488900 975540 1513300 2180600 825100 1355500 308260 150440 157820 0 0 0 0 0 0 0 0 0 0 0 0 38205 3787 40138 202699;202700 206074;206075 206075 2 VWDPDNPLTDR EGESDNRNQQKMEMKVWDPDNPLTDRQIDQ MEMKVWDPDNPLTDRQIDQFLVVARAVGTF K V W D R Q 0 1 1 3 0 0 0 0 0 0 1 0 0 0 2 0 1 1 0 1 0 0 11 0 1326.6204 O94776 O94776 178 188 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.00015337 82.749 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 1 1 1 2 0.85879 0.85516 82.864 8 Median 1.3026 1.2739 NaN 1 0 Median 1.0416 0.95776 19.298 2 0 Median 0.72647 0.74076 NaN 1 0 Median 3.8455 3.2971 NaN 1 0 Median 0.84744 0.87517 NaN 1 1 Median 0.30014 0.27006 33.26 2 0 Median 24367000 12755000 11613000 2772500 1576000 1196600 2338900 927390 1411500 10136000 5713100 4423300 1173200 324140 849110 7004300 3549100 3455200 942140 664940 277200 38206 1723 40139 202701;202702;202703;202704;202705;202706;202707;202708 206076;206077 206076 2 VWDVGTR DDTHFVSSSSDKSVKVWDVGTRTCVHTFFD SSSDKSVKVWDVGTRTCVHTFFDHQDQVWG K V W T R T 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 2 0 0 7 0 831.4239 H0YL19;H0YN81;Q9GZS3;H3BQA8 H0YL19 165 171 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes no 2 0.019661 78.616 By MS/MS By MS/MS By MS/MS 1 1 1 1.1835 0.98985 NaN 1 Median NaN NaN NaN 0 0 Median 1.1835 0.98985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8530900 6767500 1763400 0 0 0 3350700 1587300 1763400 2074000 2074000 0 3106200 3106200 0 0 0 0 0 0 0 38207 1194 40140 202709;202710;202711 206078;206079;206080 206080 3 VWDVRPFAPK EGSYLLSNAMDNTVRVWDVRPFAPKERCVK DNTVRVWDVRPFAPKERCVKIFQGNVHNFE R V W P K E 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 0 0 1 0 2 0 0 10 1 1213.6608 Q96DI7;Q9NSS8 Q96DI7 261 270 SNRNP40;DKFZp434D199 U5 small nuclear ribonucleoprotein 40 kDa protein yes no 2;3 0.0028871 92.838 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 4 3 4 1 0.83005 0.86835 36.156 14 Median 0.98539 1.0556 NaN 1 0 Median 0.72782 0.68302 NaN 1 0 Median 0.73747 0.84022 38.699 4 0 Median 1.272 1.1213 21.923 3 0 Median 1.1809 1.2786 52.324 4 1 Linear 1.0306 0.94815 NaN 1 0 Median 84511000 44002000 40509000 3590400 1798200 1792300 3734700 2230100 1504500 38809000 20772000 18037000 2132100 1060100 1072000 35763000 17915000 17849000 481220 227010 254210 38208 3627 40141 202712;202713;202714;202715;202716;202717;202718;202719;202720;202721;202722;202723;202724;202725 206081;206082;206083;206084;206085 206085 5 VWDYAGDNYVHR EETQHTYAMQLTNHRVWDYAGDNYVHRLVA NHRVWDYAGDNYVHRLVASKTDGKIVQYEC R V W H R L 1 1 1 2 0 0 0 1 1 0 0 0 0 0 0 0 0 1 2 2 0 0 12 0 1493.6688 J3KNN7;Q7Z569 J3KNN7 335 346 BRAP BRCA1-associated protein yes no 3 0.00090508 65.395 By MS/MS By MS/MS 2 1 1.0898 1.0148 1.9678 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99167 1.029 NaN 1 1 Median 1.1976 1.0008 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7220400 3877100 3343300 0 0 0 0 0 0 5991400 3221100 2770300 1229000 655980 573040 0 0 0 0 0 0 38209 1305 40142 202726;202727;202728 206086;206087;206088 206086 3 VWDYETGDFER VFSVMVSASEDATIKVWDYETGDFERTLKG ATIKVWDYETGDFERTLKGHTDSVQDISFD K V W E R T 0 1 0 2 0 0 2 1 0 0 0 0 0 1 0 0 1 1 1 1 0 0 11 0 1415.5994 P43034 P43034 134 144 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha yes yes 2 0.00011638 134.25 By MS/MS By MS/MS By matching 3 4 1 1.1601 1.0485 13.345 8 Median 1.1526 1.1461 10.562 3 0 Median 1.1791 1.0352 6.1694 4 0 Median NaN NaN NaN 0 0 Median 0.93754 0.81521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23076000 10365000 12710000 14597000 6697400 7899500 5216700 2361800 2854900 0 0 0 3262100 1306300 1955800 0 0 0 0 0 0 38210 2321 40143 202729;202730;202731;202732;202733;202734;202735;202736 206089;206090;206091;206092 206089 3 VWEQIDQMK EELQDLKGVWSELSKVWEQIDQMKEQPWVS WSELSKVWEQIDQMKEQPWVSVQPRKLRQN K V W M K E 0 0 0 1 0 2 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 9 0 1175.5645 Q14204 Q14204 1339 1347 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00050786 119.27 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.1114 1.0837 8.0381 4 Median 0.98731 0.99018 NaN 1 1 Median 1.2123 1.0793 NaN 1 0 Median 1.0189 1.0882 NaN 1 0 Median 1.2254 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56153000 26278000 29875000 15611000 7363800 8246900 18345000 8163100 10182000 16073000 8122500 7950400 6124700 2628900 3495900 0 0 0 0 0 0 38211 2865 40144 202737;202738;202739;202740;202741 206093;206094;206095;206096;206097;206098;206099;206100 206096 8 VWEQIDQMKEQPWVSVQPR EELQDLKGVWSELSKVWEQIDQMKEQPWVS IDQMKEQPWVSVQPRKLRQNLDALLNQLKS K V W P R K 0 1 0 1 0 4 2 0 0 1 0 1 1 0 2 1 0 2 0 3 0 0 19 1 2382.1791 Q14204 Q14204 1339 1357 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 7.3273E-14 106.94 By MS/MS By MS/MS By matching 1 2 1 0.73368 0.73449 11.786 4 Median 0.70657 0.74485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66339 0.76792 19.825 2 0 Median 0.77757 0.72428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56687000 33342000 23345000 42515000 24777000 17738000 0 0 0 14003000 8481000 5522400 168780 84059 84721 0 0 0 0 0 0 38212 2865 40145;40146 202742;202743;202744;202745 206101;206102;206103 206102 1567 3 VWETANNR SQAYFALASTDGHLRVWETANNRLHQEYVP STDGHLRVWETANNRLHQEYVPSAHLSGTC R V W N R L 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 8 0 988.47264 Q15061 Q15061 40 47 WDR43 WD repeat-containing protein 43 yes yes 2 0.010382 58.981 By matching By MS/MS By matching 1 1 1 1.3334 1.1061 24.155 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2261 1.1051 NaN 1 0 Median 1.5752 1.68 NaN 1 0 Median 1.3334 1.1061 NaN 1 0 Median 2271800 1063800 1208000 0 0 0 0 0 0 0 0 0 398160 169110 229050 1536300 723590 812740 337290 171120 166180 38213 2924 40147 202746;202747;202748 206104;206105 206104 2 VWFGDVEAETMYR AMLELTGQNFTPNLRVWFGDVEAETMYRCG LRVWFGDVEAETMYRCGESMLCVVPDISAF R V W Y R C 1 1 0 1 0 0 2 1 0 0 0 0 1 1 0 0 1 1 1 2 0 0 13 0 1601.7184 Q06330;Q5QPV1;H0Y8R3;Q9UBG7 Q06330 384 396 RBPJ;RBPJL Recombining binding protein suppressor of hairless;Recombining binding protein suppressor of hairless-like protein yes no 2 0.0010336 60.434 By MS/MS By MS/MS 1 1 1.1901 1.1192 1.5749 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1102 1.1318 NaN 1 0 Median 1.2756 1.1069 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7509800 3500100 4009700 0 0 0 0 0 0 6861700 3219900 3641800 648130 280190 367940 0 0 0 0 0 0 38214 2725 40148 202749;202750 206106;206107;206108 206106 3 VWGVPIPVFHHK EMMDRRPYWCISRQRVWGVPIPVFHHKTKD RQRVWGVPIPVFHHKTKDEYLINSQTTEHI R V W H K T 0 0 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 1 0 3 0 0 12 0 1414.7874 Q9NSE4 Q9NSE4 527 538 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 3 0.001658 39.266 By MS/MS By matching 1 1 1.0535 0.9732 13.701 2 Median 0.89057 0.88334 NaN 1 0 Median 1.2463 1.0722 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3308700 2122700 1186000 2538400 1798900 739520 770310 323800 446510 0 0 0 0 0 0 0 0 0 0 0 0 38215 4103 40149 202751;202752 206109 206109 1 VWHDKDKDTSSDPLLELR ADGTLITCVDSGILRVWHDKDKDTSSDPLL DKDKDTSSDPLLELRVGPGVCRMRQDPAHP R V W L R V 0 1 0 4 0 0 1 0 1 0 3 2 0 0 1 2 1 1 0 1 0 0 18 2 2153.0753 Q6RFH5;E9PS41 Q6RFH5 111 128 WDR74 WD repeat-containing protein 74 yes no 3 1.1284E-05 50.053 By matching By MS/MS 1 1 0.76027 0.87747 27.146 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.63369 0.72422 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91212 1.0632 NaN 1 0 Median NaN NaN NaN 0 0 Median 8611900 4997600 3614300 0 0 0 0 0 0 5662900 3347500 2315500 0 0 0 2948900 1650100 1298800 0 0 0 38216 987 40150 202753;202754 206110;206111 206111 2 VWKPQLFER QIYANNDKLSKRLKKVWKPQLFEREFYSEI SKRLKKVWKPQLFEREFYSEILDKKFTVTV K V W E R E 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 1 0 1 0 0 9 1 1201.6608 A2IDC7;Q4TT37;A2IDC6;Q13084 A2IDC7 104 112 MRPL28 39S ribosomal protein L28, mitochondrial yes no 3 0.0049565 43.512 By MS/MS By matching By MS/MS 2 1 1 1.146 1.1925 34.944 4 Median 1.0573 1.0841 18.54 2 0 Median 2.2996 2.1458 NaN 1 0 Median 1.1184 1.1506 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12103000 5233700 6869000 7359900 3523200 3836700 2340700 583720 1756900 2402200 1126800 1275300 0 0 0 0 0 0 0 0 0 38217 499 40151 202755;202756;202757;202758 206112;206113;206114 206112 3 VWLDPNETNEIANANSR QKRLASSVLRCGKKKVWLDPNETNEIANAN LDPNETNEIANANSRQQIRKLIKDGLIIRK K V W S R Q 2 1 4 1 0 0 2 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 17 0 1941.9181 J3QR09;J3KTE4;P84098 J3QR09 19 35 RPL19 Ribosomal protein L19;60S ribosomal protein L19 yes no 2;3 5.748E-24 183.66 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 1 2 1 0.91029 0.84984 7.6682 11 Median 0.81234 0.77768 7.3141 3 0 Median 0.96331 0.81575 2.1314 2 0 Median 0.88196 0.84683 0.50219 2 0 Median 1.0426 0.86078 NaN 1 0 Median 0.95517 0.95019 6.8133 2 0 Median 1.1041 0.89615 NaN 1 0 Median 240000000 124440000 115570000 163160000 86126000 77033000 17239000 8365200 8874100 39675000 20156000 19519000 972340 442760 529570 17045000 8474600 8570500 1909800 871410 1038400 38218 1335 40152 202759;202760;202761;202762;202763;202764;202765;202766;202767;202768;202769 206115;206116;206117;206118;206119;206120;206121;206122;206123;206124;206125 206117 11 VWLFETNPR EEKGKAKWDACANMKVWLFETNPRFTGTIA ACANMKVWLFETNPRFTGTIASFNINTNAW K V W P R F 0 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 9 0 1160.5978 Q6P1A2;F5H0M4 Q6P1A2 321 329 LPCAT3 Lysophospholipid acyltransferase 5 yes no 2 0.0031389 67.169 By MS/MS By MS/MS 1 3 1.1852 1.0545 9.0871 3 Median 0.91647 0.91155 NaN 1 0 Median 1.228 1.0658 1.5043 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8101700 4002000 4099700 6542700 3489000 3053700 1559000 512980 1046000 0 0 0 0 0 0 0 0 0 0 0 0 38219 3149 40153 202770;202771;202772;202773 206126;206127;206128;206129 206126 4 VWNLANCK SNPIIVSCGWDKLVKVWNLANCKLKTNHIG GWDKLVKVWNLANCKLKTNHIGHTGYLNTV K V W C K L 1 0 2 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 1003.4909 P63244;J3KPE3;D6RAC2;D6RHH4;D6REE5;H0Y8W2;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;D6RBD0;H0Y8R5 P63244 176 183 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.0009761 95.62 By MS/MS 1 0.1426 0.11912 NaN 1 Median NaN NaN NaN 0 0 Median 0.1426 0.11912 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 78662000 71306000 7356300 0 0 0 78662000 71306000 7356300 0 0 0 0 0 0 0 0 0 0 0 0 38220 2624 40154 202774 206130 206130 1 VWNWQSR EYPWILSASDDQTIRVWNWQSRTCVCVLTG ASDDQTIRVWNWQSRTCVCVLTGHNHYVMC R V W S R T 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 7 0 974.47225 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ITV3;A0A3B3ISK1 P53621 119 125 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2 0.068287 35.88 By MS/MS 1 1.3731 1.1695 NaN 1 Median NaN NaN NaN 0 0 Median 1.3731 1.1695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3391400 1290600 2100800 0 0 0 3391400 1290600 2100800 0 0 0 0 0 0 0 0 0 0 0 0 38221 2473 40155 202775 206131 206131 1 VWQGQAFHLDR QPSASCDKILVIPSKVWQGQAFHLDRRNSP IPSKVWQGQAFHLDRRNSPPNSLTPCLKIR K V W D R R 1 1 0 1 0 2 0 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 11 0 1355.6735 Q9Y2U8 Q9Y2U8 764 774 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 0.0001643 66.262 By MS/MS By MS/MS 1 1 1.1114 1.0575 5.5194 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0347 1.0996 NaN 1 0 Median 1.1937 1.017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10168000 5141800 5026600 0 0 0 0 0 0 8598900 4456700 4142300 1569400 685150 884260 0 0 0 0 0 0 38222 4392 40156 202776;202777 206132;206133 206132 2 VWQLGSSSPNFTLEGHEK DNNQFASASLDRTIKVWQLGSSSPNFTLEG LGSSSPNFTLEGHEKGVNCIDYYSGGDKPY K V W E K G 0 0 1 0 0 1 2 2 1 0 2 1 0 1 1 3 1 1 0 1 0 0 18 0 2014.9749 P35606 P35606 169 186 COPB2 Coatomer subunit beta yes yes 2;3 3.6713E-13 142.01 By MS/MS By MS/MS By MS/MS By matching 3 3 2 1 0.91129 0.87371 26.496 9 Median 0.87035 0.87371 5.4073 3 0 Median 0.96964 0.84505 3.9065 3 0 Plateau 1.1088 1.2208 41.817 2 0 Median 1.6491 1.4079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73986000 36889000 37097000 60488000 30787000 29701000 7301000 3654100 3646900 5843100 2308300 3534900 353690 140200 213490 0 0 0 0 0 0 38223 2246 40157 202778;202779;202780;202781;202782;202783;202784;202785;202786 206134;206135;206136;206137;206138;206139 206134 6 VWQLQDLSFQTAAR RKHLVESTNEMAPLKVWQLQDLSFQTAARI KVWQLQDLSFQTAARILASPVELALVVMKD K V W A R I 2 1 0 1 0 3 0 0 0 0 2 0 0 1 0 1 1 1 0 1 0 0 14 0 1661.8526 Q9NYU2 Q9NYU2 320 333 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 1.9658E-05 129.16 By matching By MS/MS 1 1 1.2802 1.1463 25.359 2 Median 1.0182 0.95813 NaN 1 0 Median 1.6096 1.3714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19223000 8059400 11163000 8604700 4074000 4530700 10618000 3985400 6632400 0 0 0 0 0 0 0 0 0 0 0 0 38224 4179 40158 202787;202788 206140 206140 1 VWQVTIGTR DGQTLFAGYTDNLVRVWQVTIGTR______ TDNLVRVWQVTIGTR_______________ R V W T R - 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 2 1 0 2 0 0 9 0 1058.5873 P63244;J3KPE3;D6RAC2;D6RHH4;H0YAF8;H0Y8R5;D6RF23;D6RHJ5 P63244 309 317 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 2 0.00023693 140.5 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 4 1 1 1 1 1.2723 1.1356 19.978 12 Median 1.1725 1.1251 4.8671 4 1 Median 1.3502 1.1177 29.78 4 0 Median 1.2459 1.2061 NaN 1 0 Median 1.2993 1.0843 NaN 1 0 Median 1.456 1.5036 NaN 1 0 Median 2.0821 1.6365 NaN 1 0 Median 661770000 297640000 364130000 356320000 163690000 192630000 186760000 81874000 104880000 79187000 35551000 43636000 32913000 14152000 18761000 6228300 2280400 3948000 367690 91577 276110 38225 2624 40159 202789;202790;202791;202792;202793;202794;202795;202796;202797;202798;202799;202800 206141;206142;206143;206144;206145;206146;206147;206148;206149;206150;206151;206152;206153;206154;206155;206156;206157;206158;206159;206160;206161;206162;206163;206164 206143 24 VWQYITLMR SKKVCNVAPIAGETKVWQYITLMRRIFLID IAGETKVWQYITLMRRIFLIDCPGVVYPSE K V W M R R 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 1 1 1 0 0 9 0 1208.6376 Q13823;H0YG10 Q13823 347 355 GNL2 Nucleolar GTP-binding protein 2 yes no 2 0.006571 54.157 By MS/MS By matching 4 1 1.0046 1.0403 29.162 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98452 1.0232 32.29 4 0 Median 1.2058 1.0637 NaN 1 0 Median 7486200 3791800 3694400 0 0 0 0 0 0 0 0 0 0 0 0 7251100 3696100 3555000 235090 95702 139390 38226 2839 40160 202801;202802;202803;202804;202805 206165;206166 206165 2 VWSDPFGR RAGIVQEDVQPPGLKVWSDPFGRK______ VQPPGLKVWSDPFGRK______________ K V W G R K 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 0 0 8 0 962.46102 Q8N5G0;E5RH91 Q8N5G0 59 66 SMIM20 Small integral membrane protein 20 yes no 2 0.019561 47.067 By MS/MS By matching 1 1 1.0999 0.97664 14.43 2 Median 0.9047 0.8819 NaN 1 0 Median 1.3372 1.0815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7116400 3408300 3708000 4338400 2168900 2169500 2777900 1239400 1538500 0 0 0 0 0 0 0 0 0 0 0 0 38227 3378 40161 202806;202807 206167 206167 1 VWSPLVTEEGK CTDNLTLTVARSEHKVWSPLVTEEGKRHPY SEHKVWSPLVTEEGKRHPYKMNLASEPQEV K V W G K R 0 0 0 0 0 0 2 1 0 0 1 1 0 0 1 1 1 1 0 2 0 0 11 0 1243.6449 O00151 O00151 88 98 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 0.0011704 60.518 By MS/MS By matching 1 1 1.384 1.3464 72.452 2 Median 0.86616 0.80661 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.2113 2.2473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9689500 6419300 3270100 9039500 6223300 2816200 0 0 0 0 0 0 650000 196080 453920 0 0 0 0 0 0 38228 1442 40162 202808;202809 206168 206168 1 VWSPLVTEEGKR CTDNLTLTVARSEHKVWSPLVTEEGKRHPY EHKVWSPLVTEEGKRHPYKMNLASEPQEVL K V W K R H 0 1 0 0 0 0 2 1 0 0 1 1 0 0 1 1 1 1 0 2 0 0 12 1 1399.746 O00151 O00151 88 99 PDLIM1 PDZ and LIM domain protein 1 yes yes 2;3 1.2502E-06 137.95 By MS/MS By MS/MS By matching By matching 5 3 1 1 0.95087 0.96525 22.242 10 Median 0.91395 0.91369 13.494 5 0 Median 1.1046 1.0455 9.1071 3 0 Median 0.52135 0.53388 NaN 1 0 Median 1.0885 0.95676 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 106540000 54466000 52076000 81408000 41707000 39701000 23054000 11633000 11421000 1135400 671790 463640 945040 455170 489870 0 0 0 0 0 0 38229 1442 40163 202810;202811;202812;202813;202814;202815;202816;202817;202818;202819 206169;206170;206171;206172;206173;206174;206175;206176 206169 8 VWYVSNIDGTHIAK MVTEALKPYSSGGPRVWYVSNIDGTHIAKT RVWYVSNIDGTHIAKTLAQLNPESSLFIIA R V W A K T 1 0 1 1 0 0 0 1 1 2 0 1 0 0 0 1 1 1 1 2 0 0 14 0 1601.8202 P06744;A0A2U3TZU2;A0A2R8Y6C7;A0A0J9YXP8;K7EQ48;A0A0J9YYH3;A0A0J9YX90;K7EPY4;K7ENA0 P06744 181 194 GPI Glucose-6-phosphate isomerase yes no 2;3 6.0706E-08 102.53 By MS/MS By MS/MS By MS/MS 3 3 2 1.0791 0.95895 8.3034 8 Median 1.0706 0.9874 3.3208 3 0 Median 1.0935 0.93105 7.095 3 0 Median 0.8904 0.86906 9.8666 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 207690000 98475000 109210000 154140000 72283000 81857000 24746000 11561000 13186000 28800000 14631000 14169000 0 0 0 0 0 0 0 0 0 38230 1875 40164 202820;202821;202822;202823;202824;202825;202826;202827 206177;206178;206179;206180;206181;206182;206183;206184;206185;206186;206187 206182 11 VYAENAIR KVKKALLQKNVECARVYAENAIRKKNEGVN KNVECARVYAENAIRKKNEGVNWLRMASRV R V Y I R K 2 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 8 0 934.48723 F8VUA2;F8VVT7;Q9HD42 F8VUA2 47 54 CHMP1A Charged multivesicular body protein 1a yes no 2 0.0034702 94.262 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 0.98031 0.96335 36.226 6 Median NaN NaN NaN 0 0 Median 0.46724 0.40348 NaN 1 0 Median 0.97785 0.99212 4.8721 2 0 Median 1.2423 1.0281 NaN 1 0 Median 0.96311 0.96821 NaN 1 0 Median 1.0454 0.84668 NaN 1 0 Median 35114000 16476000 18638000 0 0 0 1512500 1105900 406570 17760000 7953700 9805900 1814100 559110 1255000 11532000 5724100 5808000 2496100 1133600 1362500 38231 1066 40165 202828;202829;202830;202831;202832;202833 206188;206189;206190;206191;206192;206193;206194 206189 7 VYAEVNSLR ______________________________ AGSRARVYAEVNSLRSREYWDYEAHVPSWG R V Y L R S 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1049.5506 P19784;H3BNI9 P19784 12 20 CSNK2A2 Casein kinase II subunit alpha yes no 2 0.00069962 103.74 By MS/MS By MS/MS By MS/MS 1 1 1 1.1939 1.112 15.281 2 Median 1.2456 1.2389 NaN 1 0 Median 1.1443 0.99812 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15823000 6854500 8968400 8853000 3711900 5141100 6969900 3142600 3827300 0 0 0 0 0 0 0 0 0 0 0 0 38232 2069 40166 202834;202835;202836 206195;206196;206197 206195 3 VYAHHAVSTLGISK SNFLHRCSWLVPSPKVYAHHAVSTLGISKR KVYAHHAVSTLGISKRTTGYWSHSIQFLFA K V Y S K R 2 0 0 0 0 0 0 1 2 1 1 1 0 0 0 2 1 0 1 2 0 0 14 0 1481.7991 Q3SXM5 Q3SXM5 274 287 HSDL1 Inactive hydroxysteroid dehydrogenase-like protein 1 yes yes 3 0.00022987 58.268 By MS/MS By MS/MS By matching 2 3 1 1.4599 1.2325 31.283 6 Median 0.86396 0.84006 2.3494 2 0 Median 1.4599 1.2385 17.711 3 0 Median NaN NaN NaN 0 0 Median 1.9891 1.7014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22173000 9108300 13065000 7587300 3927200 3660100 13996000 4967600 9028100 0 0 0 590180 213540 376640 0 0 0 0 0 0 38233 3013 40167 202837;202838;202839;202840;202841;202842 206198;206199;206200;206201;206202;206203 206203 6 VYAILTHGIFSGPAISR ICHAADKLLSAGATRVYAILTHGIFSGPAI AILTHGIFSGPAISRINNACFEAVVVTNTI R V Y S R I 2 1 0 0 0 0 0 2 1 3 1 0 0 1 1 2 1 0 1 1 0 0 17 0 1800.9887 B1ALA9;P60891;A0A2R8Y7H4;B7ZB02;A0A0B4J207;P21108;H7C540;P11908 B1ALA9 211 227 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 no no 3 0.00013792 41.871 By MS/MS By matching By MS/MS By matching By matching By matching 2 1 1 2 2 1 1.1026 1.0089 15.212 9 Median 1.0288 0.99264 9.1142 2 0 Median 1.2131 1.0089 NaN 1 0 Median 0.96535 0.94587 NaN 1 0 Median 1.1493 0.97918 7.5202 2 0 Median 1.0886 1.1006 33.086 2 0 Median 1.4184 1.2504 NaN 1 0 Median 81790000 40138000 41652000 66460000 33203000 33258000 7725600 3397900 4327700 2365900 1192600 1173300 761510 464160 297350 4221500 1786500 2435000 255210 94362 160840 38234 571;1972 40168 202843;202844;202845;202846;202847;202848;202849;202850;202851 206204;206205;206206;206207;206208;206209;206210 206206 7 VYALPEDLVEVKPK NAKYAVSMARRIGARVYALPEDLVEVKPKM RVYALPEDLVEVKPKMVMTVFACLMGRGMK R V Y P K M 1 0 0 1 0 0 2 0 0 0 2 2 0 0 2 0 0 0 1 3 0 0 14 1 1598.892 P13797;A0A0A0MSQ0 P13797 600 613 PLS3 Plastin-3 yes no 2;3 3.9779E-06 88.552 By MS/MS By MS/MS By MS/MS By matching By matching 3 2 3 2 1 0.78499 0.75871 62.986 11 Median 0.82275 0.75871 89.366 3 0 Plateau 0.82765 0.77074 6.9852 2 0 Median 0.72052 0.96749 13.259 3 0 Plateau 0.80757 0.74567 23.316 2 0 Median 2.3042 2.4589 NaN 1 0 Median NaN NaN NaN 0 0 Median 264840000 139850000 125000000 145540000 78285000 67252000 95673000 49350000 46323000 20651000 11081000 9569800 1397900 738430 659450 1585600 393550 1192000 0 0 0 38235 1995 40169 202852;202853;202854;202855;202856;202857;202858;202859;202860;202861;202862 206211;206212;206213;206214;206215;206216;206217;206218;206219;206220;206221;206222;206223;206224;206225 206214 15 VYAPASTLVDQPYANEGTVVVTER ILGPSQPQSLIVTERVYAPASTLVDQPYAN DQPYANEGTVVVTERVIQPHGGGSNPLEGT R V Y E R V 3 1 1 1 0 1 2 1 0 0 1 0 0 0 2 1 3 0 2 5 0 0 24 0 2578.2915 Q14126 Q14126 967 990 DSG2 Desmoglein-2 yes yes 3 7.4512E-12 52.061 By matching By MS/MS By MS/MS 1 1 3 0.66139 0.72579 20.975 5 Median 0.50219 0.50328 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66139 0.72579 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73429 0.76605 14.353 3 0 Median NaN NaN NaN 0 0 Median 15962000 8851600 7110000 1343400 722110 621270 0 0 0 2812600 1545500 1267100 0 0 0 11806000 6584000 5221600 0 0 0 38236 2855 40170 202863;202864;202865;202866;202867 206226;206227;206228;206229;206230;206231 206230 6 VYASNQEFESVR EPFVGVLSSHFKVFRVYASNQEFESVRLNE VFRVYASNQEFESVRLNETLSSFSDDNKIT R V Y V R L 1 1 1 0 0 1 2 0 0 0 0 0 0 1 0 2 0 0 1 2 0 0 12 0 1427.6681 Q96K76 Q96K76 1085 1096 USP47 Ubiquitin carboxyl-terminal hydrolase 47 yes yes 2 2.3221E-06 166.19 By MS/MS By MS/MS 1 2 1.0748 0.90788 31.455 3 Median 1.1175 1.0489 NaN 1 0 Median 0.85222 0.72204 32.391 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17397000 8359100 9038000 11260000 5115400 6144700 6137100 3243700 2893300 0 0 0 0 0 0 0 0 0 0 0 0 38237 3690 40171 202868;202869;202870 206232;206233;206234;206235;206236;206237 206233 6 VYATILNAGTNTDGFK GVVAVLLTKKSLARRVYATILNAGTNTDGF YATILNAGTNTDGFKEQGVTFPSGDIQEQL R V Y F K E 2 0 2 1 0 0 0 2 0 1 1 1 0 1 0 0 3 0 1 1 0 0 16 0 1683.8468 P49327;A0A0U1RQF0 P49327 242 257 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 2.9483E-36 213.16 By MS/MS By MS/MS 1 2 1.0299 0.99416 35.873 3 Median 1.0299 0.99416 NaN 1 0 Median 1.029 0.90642 50.167 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23243000 9522500 13720000 14245000 5854600 8390500 8997700 3667900 5329800 0 0 0 0 0 0 0 0 0 0 0 0 38238 2377 40172 202871;202872;202873 206238;206239;206240 206238 3 VYAVATSTNTPCAR LRCTAHYVAYHVESKVYAVATSTNTPCARI KVYAVATSTNTPCARIPRMTGEEKEFETIE K V Y A R I 3 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 3 0 1 2 0 0 14 0 1509.7246 Q10570 Q10570 1033 1046 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.0017187 60.518 By MS/MS 1 0.4066 0.45566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.4066 0.45566 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1607900 1167600 440340 0 0 0 0 0 0 1607900 1167600 440340 0 0 0 0 0 0 0 0 0 38239 2753 40173 202874 206241 206241 1 VYDDMAFR LSFKDKSTYIESSTKVYDDMAFRYLSWILF YIESSTKVYDDMAFRYLSWILFPLLGCYAV K V Y F R Y 1 1 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 8 0 1015.4433 O96005 O96005 470 477 CLPTM1 Cleft lip and palate transmembrane protein 1 yes yes 2 0.01337 53.166 By matching By MS/MS 2 2 1.213 1.1116 37.787 4 Median 1.5929 1.6016 40.967 2 0 Median 1.175 0.96869 8.7776 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17068000 7289800 9778300 5620600 2031900 3588700 11448000 5258000 6189600 0 0 0 0 0 0 0 0 0 0 0 0 38240 1805 40174 202875;202876;202877;202878 206242 206242 1 VYDQTNPYTDVR ETLEYECFGGEYRPKVYDQTNPYTDVRRRY RPKVYDQTNPYTDVRRRYWNAYMLFYQRVS K V Y V R R 0 1 1 2 0 1 0 0 0 0 0 0 0 0 1 0 2 0 2 2 0 0 12 0 1469.6787 Q9UPU5 Q9UPU5 2017 2028 USP24 Ubiquitin carboxyl-terminal hydrolase 24 yes yes 2 7.0634E-07 103.26 By MS/MS 1 0.54409 0.46013 NaN 1 Median NaN NaN NaN 0 0 Median 0.54409 0.46013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4321500 2950300 1371200 0 0 0 4321500 2950300 1371200 0 0 0 0 0 0 0 0 0 0 0 0 38241 4357 40175 202879 206243 206243 0 VYDQVGTQEFEDVSYESTLK QIEERTRELIEQTKRVYDQVGTQEFEDVSY GTQEFEDVSYESTLKALADVEVTYTVQRNI R V Y L K A 0 0 0 2 0 2 3 1 0 0 1 1 0 1 0 2 2 0 2 3 0 0 20 0 2336.0696 P52888;K7EKB6 P52888 47 66 THOP1 Thimet oligopeptidase yes no 2 3.6178E-05 42.789 By MS/MS 1 1.0326 1.0003 NaN 1 Median 1.0326 1.0003 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3120700 1319000 1801800 3120700 1319000 1801800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38242 2460 40176 202880 206244 206244 1 VYDQVVEDLNSR NCKDLFDLILTCEERVYDQVVEDLNSREQE EERVYDQVVEDLNSREQETCQPVHVVNVDI R V Y S R E 0 1 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 3 0 0 12 0 1435.6943 Q9NP77 Q9NP77 115 126 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 yes yes 2 1.5296E-14 182.46 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.83984 0.79102 17.974 4 Median 0.75749 0.71802 NaN 1 0 Median 0.71894 0.60956 NaN 1 0 Median 0.93114 0.89417 NaN 1 0 Median 1.0529 0.87144 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44483000 23379000 21104000 10177000 6591600 3585400 2494100 1296100 1198100 29920000 14601000 15319000 1892600 891070 1001500 0 0 0 0 0 0 38243 4042 40177 202881;202882;202883;202884 206245;206246;206247 206247 2 VYEAVELLK DQYVKAASHLLSIHKVYEAVELLKSNHFYR LLSIHKVYEAVELLKSNHFYREAIAIAKAR K V Y L K S 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1062.5961 Q8TEQ6 Q8TEQ6 991 999 GEMIN5 Gem-associated protein 5 yes yes 2 0.028218 36.842 By MS/MS By matching By matching By matching 1 1 1 1 1.3898 1.2936 44.134 4 Median 1.4112 1.359 NaN 1 0 Median 1.125 0.98685 NaN 1 0 Median 2.5613 2.7411 NaN 1 0 Median 1.3688 1.2314 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9818100 4193100 5625000 6602300 2997000 3605300 1411400 681330 730070 1472500 378210 1094300 331910 136580 195330 0 0 0 0 0 0 38244 3478 40178 202885;202886;202887;202888 206248 206248 1 VYEDSGIPLPAESPK KERTVAQIKATVKRKVYEDSGIPLPAESPK VYEDSGIPLPAESPKKGPKKVASGVLSPPP K V Y P K K 1 0 0 1 0 0 2 1 0 1 1 1 0 0 3 2 0 0 1 1 0 0 15 0 1600.7985 F8W038;Q8IXM2;H0YIS7;F8W1H0 F8W038 84 98 C17orf49;BAP18;RNASEK-C17orf49 Chromatin complexes subunit BAP18 yes no 2 0.00026146 70.488 By MS/MS By matching 1 1 0.40997 0.35987 47.366 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.53672 0.50304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.31316 0.25745 NaN 1 0 Median 13323000 8558800 4764100 0 0 0 0 0 0 13044000 8341800 4702400 0 0 0 0 0 0 278730 217000 61733 38245 1079 40179 202889;202890 206249;206250 206249 2 VYEFLDKLDVVR ALDLVAAKCYYYHARVYEFLDKLDVVRSFL HARVYEFLDKLDVVRSFLHARLRTATLRHD R V Y V R S 0 1 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 3 0 0 12 1 1494.8082 O43242;H0YGV8 O43242 217 228 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes no 2;3 1.6056E-05 122.26 By MS/MS By MS/MS By MS/MS 4 3 1 1.0897 1.0883 47.327 8 Median 1.104 1.1164 21.484 4 0 Median 1.1238 1.0228 76.966 3 0 Median 1.0047 1.1171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43184000 20599000 22586000 24801000 11600000 13201000 16708000 8103300 8604400 1675500 895730 779810 0 0 0 0 0 0 0 0 0 38246 1560 40180 202891;202892;202893;202894;202895;202896;202897;202898 206251;206252;206253;206254;206255;206256 206253 6 VYEGERPLTK IFSTASDNQPTVTIKVYEGERPLTKDNHLL TVTIKVYEGERPLTKDNHLLGTFDLTGIPP K V Y T K D 0 1 0 0 0 0 2 1 0 0 1 1 0 0 1 0 1 0 1 1 0 0 10 1 1190.6295 P11021 P11021 465 474 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.00050285 121.73 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 2 1 1 1.1266 1.0386 19.609 7 Median 1.0552 1.0736 2.8032 2 0 Median 1.0389 0.98595 5.0245 2 1 Median NaN NaN NaN 0 0 Median 1.131 1.037 NaN 1 0 Median 1.5424 1.7126 NaN 1 0 Median 1.1823 1.0386 NaN 1 0 Median 95792000 30584000 65207000 17227000 8626200 8601000 75414000 20863000 54552000 0 0 0 1150200 334780 815460 1375600 481200 894420 624390 279580 344800 38247 1948 40181 202899;202900;202901;202902;202903;202904;202905;202906;202907;202908 206257;206258;206259;206260;206261;206262;206263;206264 206260 8 VYEIDITDASVVR GSGKLVFFERRTFQRVYEIDITDASVVRCL QRVYEIDITDASVVRCLWHPKLNQIMVGTG R V Y V R C 1 1 0 2 0 0 1 0 0 2 0 0 0 0 0 1 1 0 1 3 0 0 13 0 1478.7617 Q9NW82 Q9NW82 464 476 WDR70 WD repeat-containing protein 70 yes yes 2 0.0012355 72.006 By MS/MS 1 1.097 1.1698 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.097 1.1698 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2773400 1212500 1560900 0 0 0 0 0 0 2773400 1212500 1560900 0 0 0 0 0 0 0 0 0 38248 4147 40182 202909 206265 206265 1 VYEIPGLEPITFAGK GVRSTRKSEPPPLDRVYEIPGLEPITFAGK VYEIPGLEPITFAGKMHFVPWLARPIFPPW R V Y G K M 1 0 0 0 0 0 2 2 0 2 1 1 0 1 2 0 1 0 1 1 0 0 15 0 1632.8763 Q9BZE1;S4R369 Q9BZE1 49 63 MRPL37 39S ribosomal protein L37, mitochondrial yes no 2 0.00020074 67.153 By MS/MS By MS/MS By matching By matching 1 1 1 1 0.88079 0.91432 21.474 4 Median 0.73117 0.68271 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.7472 0.81367 NaN 1 0 Median 1.2623 1.0855 NaN 1 0 Median 1.0383 1.0274 NaN 1 0 Median NaN NaN NaN 0 0 Median 8585100 5144600 3440500 5314900 3420000 1894900 0 0 0 2825000 1508000 1317000 152880 78994 73889 292280 137530 154750 0 0 0 38249 3897 40183 202910;202911;202912;202913 206266;206267 206266 2 VYEIQDIYENSWTK ELQASRVSSDVIDQKVYEIQDIYENSWTKL KVYEIQDIYENSWTKLTERFFKNTPWPEAE K V Y T K L 0 0 1 1 0 1 2 0 0 2 0 1 0 0 0 1 1 1 2 1 0 0 14 0 1786.8414 B0QY89;Q9Y262;C9JHP4;C9K0Q7 B0QY89 131 144 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 9.3031E-06 91.03 By MS/MS By matching 3 1 1.0773 1.0365 7.815 4 Median 1.0422 0.98061 8.3128 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2761 1.0955 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25900000 12460000 13440000 25458000 12253000 13206000 0 0 0 0 0 0 442200 207210 234980 0 0 0 0 0 0 38250 554 40184 202914;202915;202916;202917 206268;206269;206270 206270 3 VYELQASR IQYFHKTVSDLIDQKVYELQASRVSSDVID SDLIDQKVYELQASRVSSDVIDQKVYEIQD K V Y S R V 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 964.49779 B0QY89;Q9Y262;C9JHP4;C9K0Q7;H7C3A0 B0QY89 114 121 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 3.2911E-06 166.17 By MS/MS By MS/MS By MS/MS 1 1 1 1.5497 1.3085 5.0786 3 Plateau 1.2791 1.2224 NaN 1 1 Median 1.5626 1.3501 NaN 1 0 Median 1.2408 1.3085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33971000 14360000 19611000 9021400 3573200 5448200 23424000 10109000 13315000 1525500 677950 847580 0 0 0 0 0 0 0 0 0 38251 554 40185 202918;202919;202920 206271;206272;206273;206274 206271 4 VYENVGLMQQQK TPTPPCAEMREDSARVYENVGLMQQQKSFR SARVYENVGLMQQQKSFR____________ R V Y Q K S 0 0 1 0 0 3 1 1 0 0 1 1 1 0 0 0 0 0 1 2 0 0 12 0 1435.7129 Q06124 Q06124 583 594 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes yes 2 4.4853E-06 148.94 By MS/MS By MS/MS 1 1 1.2108 1.0796 12.48 2 Median 1.2617 1.1792 NaN 1 0 Median 1.1619 0.98842 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23954000 11645000 12309000 19348000 9644100 9704000 4606300 2001100 2605200 0 0 0 0 0 0 0 0 0 0 0 0 38252 2721 40186 202921;202922 206275;206276;206277;206278 206277 4 VYENYPTYDLTER SANLEEVTMKQICKKVYENYPTYDLTERKD KKVYENYPTYDLTERKDFIKTTVKEVNISV K V Y E R K 0 1 1 1 0 0 2 0 0 0 1 0 0 0 1 0 2 0 3 1 0 0 13 0 1661.7573 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 350 362 DEK Protein DEK yes no 2 6.2264E-07 152.07 By MS/MS By MS/MS By MS/MS By matching 5 6 2 3 0.90052 0.79188 28.845 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73779 0.70303 9.6614 5 0 Median 0.96107 0.82305 30.588 6 0 Median 1.1642 1.1957 60.533 2 0 Median 0.94321 0.81128 7.9561 3 0 Plateau 416810000 223300000 193510000 0 0 0 0 0 0 304430000 167740000 136690000 97234000 47372000 49862000 11004000 6061900 4942000 4138100 2120900 2017200 38253 1166 40187 202923;202924;202925;202926;202927;202928;202929;202930;202931;202932;202933;202934;202935;202936;202937;202938 206279;206280;206281;206282;206283;206284;206285;206286;206287;206288;206289;206290;206291;206292;206293;206294;206295;206296;206297;206298;206299 206279 21 VYENYPTYDLTERK SANLEEVTMKQICKKVYENYPTYDLTERKD KVYENYPTYDLTERKDFIKTTVKEVNISVF K V Y R K D 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 H0Y993;P35659;B4DFG0;A0A494C028;A0A494C198 H0Y993 350 363 DEK Protein DEK yes no 2;3 0.00020939 78.653 By MS/MS By MS/MS 1 3 0.98204 0.93908 10.763 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79486 0.81068 NaN 1 0 Median 1.0155 0.96896 4.4306 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 188770000 94962000 93810000 0 0 0 0 0 0 134210000 69656000 64559000 54557000 25306000 29251000 0 0 0 0 0 0 38254 1166 40188 202939;202940;202941;202942 206300;206301;206302;206303;206304 206301 5 VYESIGQYGGETVK VAEQEMQLEPITDERVYESIGQYGGETVKI RVYESIGQYGGETVKIVRIEKARDIPLGAT R V Y V K I 0 0 0 0 0 1 2 3 0 1 0 1 0 0 0 1 1 0 2 2 0 0 14 0 1528.7409 Q8N3R9 Q8N3R9 242 255 MPP5 MAGUK p55 subfamily member 5 yes yes 2 3.251E-05 96.103 By MS/MS 1 1.008 1.0373 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.008 1.0373 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7921300 4215900 3705400 0 0 0 0 0 0 7921300 4215900 3705400 0 0 0 0 0 0 0 0 0 38255 3368 40189 202943 206305 206305 1 VYEVATFYTMYNR AMNKVAEVLQVPPMRVYEVATFYTMYNRKP MRVYEVATFYTMYNRKPVGKYHIQVCTTTP R V Y N R K 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 2 0 3 2 0 0 13 0 1655.7654 E7EPT4;P19404 E7EPT4 115 127 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes no 2 0.00045482 73.067 By MS/MS By matching 1 1 1.4925 1.3389 12.14 2 Median 1.2975 1.2288 NaN 1 0 Median 1.7167 1.459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8368000 3879600 4488400 8227400 3825300 4402100 140610 54315 86296 0 0 0 0 0 0 0 0 0 0 0 0 38256 873 40190 202944;202945 206306 206306 1 VYFGGFFIR GQLACLHARLHSLDRVYFGGFFIRGHPVTM LHSLDRVYFGGFFIRGHPVTMRTITYSINF R V Y I R G 0 1 0 0 0 0 0 2 0 1 0 0 0 3 0 0 0 0 1 1 0 0 9 0 1104.5757 E9PHT6;A0A494C169;Q9NVE7;H0YA26;H0YA31 E9PHT6 280 288 PANK4 Pantothenate kinase 4 yes no 2 0.0702 26.602 By MS/MS 1 1.3397 1.3275 NaN 1 Median 1.3397 1.3275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1631600 783120 848450 1631600 783120 848450 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38257 466 40191 202946 206307 206307 1 VYFGMQDGSVNMR PGVVDTGLFINMAERVYFGMQDGSVNMREK ERVYFGMQDGSVNMREKPFC__________ R V Y M R E 0 1 1 1 0 1 0 2 0 0 0 0 2 1 0 1 0 0 1 2 0 0 13 0 1502.6646 P49247 P49247 294 306 RPIA Ribose-5-phosphate isomerase yes yes 2 0.00049996 72.006 By MS/MS By matching By matching By matching 2 2 1 1 1.1124 0.99029 23.688 6 Median 1.2296 1.1649 18.717 2 0 Median 0.90436 0.77354 1.1558 2 0 Median 1.3472 1.2914 NaN 1 0 Median 1.1441 0.96099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11238000 5034500 6203800 8379300 3774500 4604900 1108000 509110 598860 1331500 535970 795480 419500 214890 204610 0 0 0 0 0 0 38258 2374 40192 202947;202948;202949;202950;202951;202952 206308;206309;206310 206308 2 VYFLPITPHYVTQVIR PNIATVQTSQGLADKVYFLPITPHYVTQVI YFLPITPHYVTQVIRNERPDGVLLTFGGQT K V Y I R N 0 1 0 0 0 1 0 0 1 2 1 0 0 1 2 0 2 0 2 3 0 0 16 0 1945.0826 F8VPD4;P27708 F8VPD4 450 465 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2;3 0.0043619 34.378 By MS/MS By MS/MS By matching 4 2 1 0.88509 0.8277 15.76 7 Median 0.93207 0.91964 9.9258 4 0 Median 0.8847 0.74499 0.19366 2 0 Median NaN NaN NaN 0 0 Median 0.76647 0.6672 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16043000 7659200 8383400 12421000 6166200 6255000 3550400 1453000 2097400 0 0 0 70964 39988 30977 0 0 0 0 0 0 38259 1057 40193 202953;202954;202955;202956;202957;202958;202959 206311;206312 206311 1 VYGALMWSLGK VLNKADQIETQQLMRVYGALMWSLGKIINT QLMRVYGALMWSLGKIINTPEVVRVYIGSF R V Y G K I 1 0 0 0 0 0 0 2 0 0 2 1 1 0 0 1 0 1 1 1 0 0 11 0 1223.6373 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8;Q9H223 A0A024R571 246 256 EHD1;EHD4 EH domain-containing protein 1;EH domain-containing protein 4 no no 2 0.0085156 40.352 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1598 1.0705 8.9154 4 Median 1.1131 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1835 1.1823 NaN 1 0 Median 1.2346 1.0767 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1365 0.95101 NaN 1 0 Median 12983000 5954300 7029200 5315700 2405400 2910300 0 0 0 5670800 2576800 3094100 135060 65794 69262 0 0 0 1861900 906260 955600 38260 5;3939 40194 202960;202961;202962;202963 206313;206314;206315 206313 3 VYGGLTTK GVINEEALSVTELDRVYGGLTTKVQESLKK SVTELDRVYGGLTTKVQESLKKQEGLLKNI R V Y T K V 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 1 1 0 0 8 0 837.45962 Q8WUM4 Q8WUM4 607 614 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.023904 43.808 By matching By MS/MS 2 1 1.3062 1.1431 42.658 3 Median 0.99809 1.0086 59.455 2 0 Median 1.3062 1.1431 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6564400 2830600 3733800 2413900 974760 1439100 4150500 1855800 2294700 0 0 0 0 0 0 0 0 0 0 0 0 38261 3493 40195 202964;202965;202966 206316 206316 1 VYHNQYSTNSFALNK NINNYFKLGQEGKYRVYHNQYSTNSFALNK VYHNQYSTNSFALNKHQHREDHDKRRHLAH R V Y N K H 1 0 3 0 0 1 0 0 1 0 1 1 0 1 0 2 1 0 2 1 0 0 15 0 1784.8482 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;F5GXF5;A0A0A0MR81 Q12830 850 864 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 1.9574E-09 103.34 By MS/MS By MS/MS 2 1 0.9141 0.97531 5.9255 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91402 0.97375 0.22601 2 0 Median 1.0899 1.079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87702000 44755000 42948000 0 0 0 0 0 0 79196000 40666000 38530000 8506600 4088600 4418000 0 0 0 0 0 0 38262 2762 40196 202967;202968;202969 206317;206318;206319;206320 206319 4 VYHYFQWR MMLLTVYGGYLCSVRVYHYFQWRRAQRQAA GYLCSVRVYHYFQWRRAQRQAAEEQKTSGI R V Y W R R 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 1 2 1 0 0 8 0 1197.572 Q96I36 Q96I36 34 41 COX14 Cytochrome c oxidase assembly protein COX14 yes yes 2;3 0.0012957 79.597 By MS/MS By matching 2 1 1.5783 1.5373 37.288 3 Median 1.3744 1.3399 19.439 2 0 Median 2.8958 2.4423 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8943900 3583000 5360900 8705700 3491700 5214000 238290 91301 146990 0 0 0 0 0 0 0 0 0 0 0 0 38263 3675 40197 202970;202971;202972 206321;206322;206323 206321 3 VYIASSSGSTAIK ______________________________ IRVYIASSSGSTAIKKKQQDVLGFLEANKI R V Y I K K 2 0 0 0 0 0 0 1 0 2 0 1 0 0 0 4 1 0 1 1 0 0 13 0 1282.6769 O75368 O75368 5 17 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 2 5.5411E-07 116.77 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0251 0.96882 18.581 5 Median 0.96984 0.86624 8.8376 2 0 Median 1.5528 1.2727 NaN 1 0 Median 1.0093 0.96882 NaN 1 0 Median 1.4734 1.1957 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155530000 68020000 87509000 70966000 33992000 36974000 74411000 29584000 44827000 8075200 3596100 4479100 2075900 846800 1229100 0 0 0 0 0 0 38264 1663 40198 202973;202974;202975;202976;202977 206324;206325;206326;206327;206328;206329;206330;206331;206332 206328 9 VYIASSSGSTAIKK ______________________________ RVYIASSSGSTAIKKKQQDVLGFLEANKIG R V Y K K K 2 0 0 0 0 0 0 1 0 2 0 2 0 0 0 4 1 0 1 1 0 0 14 1 1410.7718 O75368 O75368 5 18 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein yes yes 2;3 0.00024982 62.303 By MS/MS By MS/MS By matching By MS/MS 2 2 1 1 1.3592 1.2826 17.455 6 Median 1.0104 0.94625 0.061085 2 0 Median 1.5599 1.3523 2.1387 2 0 Median 1.2024 1.235 NaN 1 0 Median 1.5913 1.3347 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34972000 15442000 19530000 17516000 8675600 8840100 16023000 6138200 9885200 988440 462480 525960 444690 165610 279080 0 0 0 0 0 0 38265 1663 40199 202978;202979;202980;202981;202982;202983 206333;206334;206335;206336;206337;206338;206339;206340 206334 8 VYIGEEEKK LPTLKDMDFLNKNQKVYIGEEEKKIFLEKL LNKNQKVYIGEEEKKIFLEKLKRDVEFLVQ K V Y K K I 0 0 0 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 1 1 0 0 9 1 1093.5655 Q8TBX8;H0YIJ6 Q8TBX8 252 260 PIP4K2C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma yes no 2 0.056291 33.797 By matching By MS/MS By matching 1 1 1 1.058 1.1272 14.128 3 Median 1.3171 1.2887 NaN 1 0 Median 1.0299 0.97159 NaN 1 0 Median 1.058 1.1272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1183700 596360 587340 306720 145530 161190 599580 323450 276130 277400 127380 150020 0 0 0 0 0 0 0 0 0 38266 3462 40200 202984;202985;202986 206341 206341 1 VYIGSFWAQPLQNTDNR MWSLGKVINTPEVLRVYIGSFWAQPLQNTD IGSFWAQPLQNTDNRRLFEAEAQDLFRDIQ R V Y N R R 1 1 2 1 0 2 0 1 0 1 1 0 0 1 1 1 1 1 1 1 0 0 17 0 2007.9803 Q9H223 Q9H223 255 271 EHD4 EH domain-containing protein 4 yes yes 2 0.021075 38.021 By MS/MS 1 0.88509 0.93325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88509 0.93325 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1561900 888580 673360 0 0 0 0 0 0 1561900 888580 673360 0 0 0 0 0 0 0 0 0 38267 3939 40201 202987 206342 206342 1 VYIGSFWAQPLQNTDNRR MWSLGKVINTPEVLRVYIGSFWAQPLQNTD GSFWAQPLQNTDNRRLFEAEAQDLFRDIQS R V Y R R L 1 2 2 1 0 2 0 1 0 1 1 0 0 1 1 1 1 1 1 1 0 0 18 1 2164.0814 Q9H223 Q9H223 255 272 EHD4 EH domain-containing protein 4 yes yes 3 8.6632E-09 72.417 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 0.93113 0.8676 20.089 5 Median 0.7073 0.69685 NaN 1 0 Median 0.88578 0.80447 NaN 1 0 Median 1.0911 1.1784 NaN 1 1 Median 0.93113 0.8676 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1232 0.993 NaN 1 0 Median 14337000 7370600 6966600 5367000 2929200 2437800 270860 148090 122770 7897100 3908200 3988900 509470 244930 264540 0 0 0 292640 140120 152520 38268 3939 40202 202988;202989;202990;202991;202992 206343;206344 206344 2 VYIGSFWSHPLLIPDNR MWSLGKIINTPEVVRVYIGSFWSHPLLIPD IGSFWSHPLLIPDNRKLFEAEEQDLFKDIQ R V Y N R K 0 1 1 1 0 0 0 1 1 2 2 0 0 1 2 2 0 1 1 1 0 0 17 0 2013.0472 A0A024R571;Q9H4M9;C9JC03;C9J2Z4;C9JDQ8 A0A024R571 266 282 EHD1 EH domain-containing protein 1 no no 3 0.021787 25.319 By MS/MS By MS/MS By MS/MS 1 1 1 0.82236 0.77654 9.4005 3 Median 0.82236 0.83461 NaN 1 0 Median 0.89612 0.77654 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80635 0.69266 NaN 1 0 Median 5216100 2744600 2471400 1221300 742790 478500 2425800 1194900 1230900 0 0 0 0 0 0 0 0 0 1569000 806980 762020 38269 5 40203 202993;202994;202995 206345;206346;206347;206348 206346 4 VYINLDKETK VIACDGGGGALGHPKVYINLDKETKTGTCG LGHPKVYINLDKETKTGTCGYCGLQFRQHH K V Y T K T 0 0 1 1 0 0 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1221.6605 O75380 O75380 99 108 NDUFS6 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial yes yes 2;3 4.6685E-25 169.44 By MS/MS By MS/MS By matching 2 3 1 0.98289 0.92101 23.184 6 Median 0.98289 0.92044 4.0651 2 0 Median 1.4057 1.2186 30.741 3 1 Median 0.8739 0.89547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38482000 16556000 21925000 12742000 6196300 6545900 24023000 9422800 14600000 1716400 936900 779500 0 0 0 0 0 0 0 0 0 38270 1666 40204 202996;202997;202998;202999;203000;203001 206349;206350;206351;206352;206353;206354;206355 206355 7 VYISNGQVLDSR ______________________________ ______________________________ M V Y S R S 0 1 1 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 1 2 0 0 12 0 1349.6939 F8WAX7;F6XHT0;Q9Y6D0 F8WAX7 2 13 SELK Selenoprotein K yes no 2 0.00098074 87.298 By MS/MS 1 0.5052 0.49178 NaN 1 Median 0.5052 0.49178 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6844000 5506200 1337800 6844000 5506200 1337800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38271 1053 40205 203002 206356 206356 1 VYIVHGVQEDLR ______________________________ AEKVYIVHGVQEDLRVDGRGCEDYRCVEVE K V Y L R V 0 1 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 1 3 0 0 12 0 1426.7569 Q15024 Q15024 12 23 EXOSC7 Exosome complex component RRP42 yes yes 2;3 3.927E-05 152.28 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 2 1 1.2052 1.1251 11.328 10 Median 1.0713 1.0019 18.216 2 0 Median 1.2599 1.0543 16.586 2 0 Median 1.1896 1.1534 2.6242 3 0 Median 1.1643 0.97137 7.4973 2 0 Median NaN NaN NaN 0 0 Median 1.2887 1.1211 NaN 1 0 Median 148250000 67633000 80620000 13879000 6223300 7655900 7341900 2959200 4382800 105080000 48320000 56756000 21342000 9788900 11553000 0 0 0 613560 341710 271850 38272 2916 40206 203003;203004;203005;203006;203007;203008;203009;203010;203011;203012 206357;206358;206359;206360;206361;206362;206363;206364;206365;206366;206367;206368 206360 12 VYIYSSGSVEAQK DVVPAVRKWREAGMKVYIYSSGSVEAQKLL MKVYIYSSGSVEAQKLLFGHSTEGDILELV K V Y Q K L 1 0 0 0 0 1 1 1 0 1 0 1 0 0 0 3 0 0 2 2 0 0 13 0 1429.7089 A0A0C4DGY8;D6RA00;Q9UHY7 A0A0C4DGY8 61 73 ENOPH1 Enolase-phosphatase E1 yes no 2 4.8234E-07 159.83 By MS/MS By MS/MS By matching 2 4 1 1.1747 1.0315 25.736 6 Median 1.1946 1.0937 3.1695 2 0 Median 1.1927 1.0089 27.258 3 1 Median NaN NaN NaN 0 0 Median 0.78963 0.65159 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93222000 43036000 50186000 78896000 35819000 43077000 13470000 6774100 6695700 0 0 0 855840 442310 413530 0 0 0 0 0 0 38273 258 40207 203013;203014;203015;203016;203017;203018;203019 206369;206370;206371;206372;206373;206374;206375;206376;206377;206378;206379;206380;206381 206372 13 VYLDNLPSASMYER EATLAKKRKVLEFERVYLDNLPSASMYERS RVYLDNLPSASMYERSYMHRDVITHVVCTK R V Y E R S 1 1 1 1 0 0 1 0 0 0 2 0 1 0 1 2 0 0 2 1 0 0 14 0 1656.7818 Q96BP3;F5H7P7;D6RB19;D6RHV0 Q96BP3 72 85 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 3.2479E-07 115.18 By MS/MS By MS/MS By matching By matching 1 1 2 1 1.0399 0.96625 4.9427 4 Median 0.92241 0.9048 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9832 0.99439 NaN 1 0 Median 1.1429 0.97134 4.8033 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27660000 13231000 14429000 2554100 1314400 1239700 0 0 0 22735000 10955000 11781000 1031100 475470 555610 1339400 486360 853070 0 0 0 38274 3609 40208 203020;203021;203022;203023;203024 206382;206383;206384;206385 206385 4 VYLGDIPLK LIDWNNPAIINKMYKVYLGDIPLKTKEGAV INKMYKVYLGDIPLKTKEGAVLKPELKRDP K V Y L K T 0 0 0 1 0 0 0 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 9 0 1016.5906 Q5VYK3;J3KN16;R4GMY1 Q5VYK3 305 313 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0070414 52.716 By MS/MS 1 0.77996 0.75284 NaN 1 Median 0.77996 0.75284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14403000 7038500 7364500 14403000 7038500 7364500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38275 3116 40209 203025 206386;206387 206387 2 VYLLYRPGHYDILYK GTTNPHIFPEGSEPKVYLLYRPGHYDILYK VYLLYRPGHYDILYK_______________ K V Y Y K - 0 1 0 1 0 0 0 1 1 1 3 1 0 0 1 0 0 0 4 1 0 0 15 1 1912.0247 J3KR44;Q96FW1;F5GYN4;F5H6Q1;F5H3F0 J3KR44 258 272 OTUB1 Ubiquitin thioesterase OTUB1 yes no 2;3;4 1.2593E-08 100.88 By MS/MS By matching By matching By matching 4 4 2 1 0.98007 0.99095 18.32 11 Median 0.95062 0.96617 8.4369 4 0 Median 1.1154 1.0089 17.902 4 0 Median 1.0612 1.1616 14.881 2 0 Median 0.72704 0.68612 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 177180000 86649000 90528000 166190000 81469000 84722000 6093200 2806400 3286800 4650000 2239700 2410400 241560 133470 108090 0 0 0 0 0 0 38276 1322 40210 203026;203027;203028;203029;203030;203031;203032;203033;203034;203035;203036 206388;206389;206390;206391;206392;206393;206394 206393 7 VYLQNEYK LGAVYDVSHYNALLKVYLQNEYKFSPTDFL HYNALLKVYLQNEYKFSPTDFLAKMEEANI K V Y Y K F 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 1055.5288 P42704;B8ZZ38;A0A0C4DG06;C9JCA9 P42704 171 178 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes no 2 0.0023555 129.4 By MS/MS By MS/MS 1 1 1.2462 1.125 20.723 2 Median 1.0011 0.97168 NaN 1 1 Median 1.5514 1.3026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49734000 20903000 28830000 7681500 3856400 3825100 42052000 17047000 25005000 0 0 0 0 0 0 0 0 0 0 0 0 38277 2315 40211 203037;203038 206395;206396;206397 206397 3 VYMGEMGR RQYELVVHTDIDAAKVYMGEMGRLKSYENQ TDIDAAKVYMGEMGRLKSYENQKPPFDAKN K V Y G R L 0 1 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 1 1 0 0 8 0 941.40991 P16435;H0Y4R2 P16435 258 265 POR NADPH--cytochrome P450 reductase yes no 2 0.01337 53.166 By MS/MS By matching 1 1 1.2231 1.1319 11.251 2 Median 1.0591 1.0454 NaN 1 0 Median 1.4124 1.2257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5237800 2242500 2995300 2151200 931500 1219700 3086500 1311000 1775500 0 0 0 0 0 0 0 0 0 0 0 0 38278 2030 40212 203039;203040 206398;206399 206399 2 VYNASSTIVPSLK HTNKFAVALLDDSVRVYNASSTIVPSLKHR VRVYNASSTIVPSLKHRLQRNVASLAWKPL R V Y L K H 1 0 1 0 0 0 0 0 0 1 1 1 0 0 1 3 1 0 1 2 0 0 13 0 1377.7504 Q9NRG9;F8VZ44;H3BU82 Q9NRG9 177 189 AAAS Aladin yes no 2 9.0305E-07 113.47 By matching By matching By MS/MS By MS/MS 2 1 1 1 1.1002 1.0681 35.11 5 Median 0.73924 0.74049 17.337 2 0 Median 1.8638 1.6632 NaN 1 0 Median 1.1002 1.0681 NaN 1 0 Median 1.3524 1.1614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38869000 19347000 19522000 22139000 11487000 10652000 448200 152500 295700 13902000 6685000 7216700 2379800 1022400 1357400 0 0 0 0 0 0 38279 4082 40213 203041;203042;203043;203044;203045 206400;206401;206402 206400 3 VYNEAGVTFT LRTAAYVNAIEKVFKVYNEAGVTFT_____ EKVFKVYNEAGVTFT_______________ K V Y F T - 1 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 2 0 1 2 0 0 10 0 1099.5186 P00367 P00367 549 558 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2 0.063663 41.429 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22473000 0 0 22473000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38280 1814 40214 203046 206403 206403 1 VYNENLVHMIEHAQK ENLELMSQHGCNAWKVYNENLVHMIEHAQK VYNENLVHMIEHAQKELQKLRKHIQDLNWQ K V Y Q K E 1 0 2 0 0 1 2 0 2 1 1 1 1 0 0 0 0 0 1 2 0 0 15 0 1823.8989 O75934 O75934 137 151 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3;4 0.00022796 72.652 By MS/MS 4 1.0803 1.0129 13.815 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0803 1.0129 13.815 4 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63330000 28864000 34466000 0 0 0 0 0 0 63330000 28864000 34466000 0 0 0 0 0 0 0 0 0 38281 1707 40215 203047;203048;203049;203050 206404;206405;206406;206407 206404 4 VYNVTQHAVGIVVNK QKGMPHKCYHGKTGRVYNVTQHAVGIVVNK VYNVTQHAVGIVVNKQVKGKILAKRINVRI R V Y N K Q 1 0 2 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 5 0 0 15 0 1639.9046 P46778;G3V1B3;M0R181 P46778 64 78 RPL21 60S ribosomal protein L21 yes no 2;3 1.1237E-19 190.46 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 3 1 6 5 1.2705 1.2459 20.796 25 Median 1.1994 1.0999 5.6852 4 0 Median 1.3411 1.1292 16.602 6 2 Median 1.3302 1.2484 20.647 3 0 Median 1.2705 1.0541 NaN 1 0 Median 1.2439 1.3345 28.366 6 0 Median 1.3882 1.1444 16.096 5 0 Median 1240200000 555440000 684750000 453240000 211360000 241890000 265890000 117240000 148650000 152320000 65038000 87281000 10558000 4357500 6200800 290570000 129260000 161300000 67618000 28186000 39431000 38282 2344 40216 203051;203052;203053;203054;203055;203056;203057;203058;203059;203060;203061;203062;203063;203064;203065;203066;203067;203068;203069;203070;203071;203072;203073;203074;203075 206408;206409;206410;206411;206412;206413;206414;206415;206416;206417;206418;206419;206420;206421;206422;206423;206424;206425;206426;206427;206428;206429;206430;206431;206432;206433;206434;206435;206436 206426 29 VYNVTYTVK KTPCEEVYVKHMGNRVYNVTYTVKEKGDYI KHMGNRVYNVTYTVKEKGDYILIVKWGDES R V Y V K E 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 2 3 0 0 9 0 1085.5757 Q14315 Q14315 2691 2699 FLNC Filamin-C yes yes 2 0.00053789 114.28 By MS/MS By MS/MS By matching By MS/MS 2 3 1 1 1.3114 1.267 22.348 7 Median 1.3313 1.3182 14.977 2 1 Median 1.2471 1.1044 10.094 3 0 Median 1.8237 2.0326 NaN 1 0 Median 1.3114 1.2704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71242000 33772000 37470000 13788000 6593500 7194300 50941000 24752000 26189000 3582100 1259400 2322700 2930900 1166900 1764000 0 0 0 0 0 0 38283 2871 40217 203076;203077;203078;203079;203080;203081;203082 206437;206438;206439;206440 206437 4 VYNWDVK FLRDQFTTTEVNMARVYNWDVKRRNKDDST TTEVNMARVYNWDVKRRNKDDSTKNKA___ R V Y V K R 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 2 0 0 7 0 922.45487 P61758 P61758 179 185 VBP1 Prefoldin subunit 3 yes yes 2 0.016334 68.915 By MS/MS By MS/MS By matching 1 1 1 1.229 1.0569 1.3742 3 Plateau 1.1421 1.0601 NaN 1 0 Median 1.229 1.0365 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2537 1.0341 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24417000 11038000 13379000 20364000 9370500 10994000 3392000 1391300 2000700 0 0 0 660610 276100 384510 0 0 0 0 0 0 38284 2561 40218 203083;203084;203085 206441;206442 206441 2 VYNYNHLMPTR KKKIAKRSKIKSFVKVYNYNHLMPTRYSVD SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD K V Y T R Y 0 1 2 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 11 0 1406.6765 P61353;K7ELC7 P61353 74 84 RPL27 60S ribosomal protein L27 yes no 2;3 5.8403E-10 176.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 11 9 7 5 3 4 1.0981 0.9534 18.094 39 Median 1.0874 1.0498 23.358 11 0 Median 1.0939 0.92518 5.3503 9 0 Median 0.97503 0.95109 24.862 7 0 Median 1.1657 0.9542 6.2727 5 0 Median 1.1947 1.1983 6.9445 3 0 Median 1.1932 0.91909 5.862 4 0 Median 773010000 374990000 398030000 460720000 224740000 235990000 168520000 82737000 85778000 91985000 43931000 48054000 30119000 13817000 16302000 15992000 7234300 8758100 5679900 2531700 3148300 38285 2557 40219;40220 203086;203087;203088;203089;203090;203091;203092;203093;203094;203095;203096;203097;203098;203099;203100;203101;203102;203103;203104;203105;203106;203107;203108;203109;203110;203111;203112;203113;203114;203115;203116;203117;203118;203119;203120;203121;203122;203123;203124 206443;206444;206445;206446;206447;206448;206449;206450;206451;206452;206453;206454;206455;206456;206457;206458;206459;206460;206461;206462;206463;206464;206465;206466;206467;206468;206469;206470;206471;206472;206473;206474;206475;206476;206477;206478;206479;206480;206481;206482;206483;206484;206485;206486;206487;206488;206489;206490;206491;206492;206493;206494;206495;206496;206497;206498;206499 206452 1233 57 VYPQAVYFPIR SEGKLLLNLISQVGRVYPQAVYFPIRTLYL QVGRVYPQAVYFPIRTLYLTLKIEQRERYK R V Y I R T 1 1 0 0 0 1 0 0 0 1 0 0 0 1 2 0 0 0 2 2 0 0 11 0 1351.7289 F2Z2U4;Q9Y4A5;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3231 3241 TRRAP Transformation/transcription domain-associated protein yes no 2 0.00018595 107.66 By MS/MS By MS/MS By matching 1 1 1 0.69201 0.72328 19.937 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69201 0.72328 NaN 1 0 Median 0.87785 0.76425 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64349 0.52813 NaN 1 0 Median 39651000 23106000 16545000 0 0 0 0 0 0 37535000 22007000 15528000 1866400 961050 905370 0 0 0 249620 137440 112180 38286 991 40221 203125;203126;203127 206500;206501;206502;206503 206501 4 VYPSSLSK HVSQMAISFLTTLAKVYPSSLSKISGSILN FLTTLAKVYPSSLSKISGSILNELIGLVRS K V Y S K I 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 3 0 0 1 1 0 0 8 0 879.47018 Q86VP6;A0A0C4DGH5 Q86VP6 722 729 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes no 2 0.052302 49.933 By MS/MS By MS/MS 1 2 0.94228 0.89495 5.7616 2 Median 0.93274 0.93216 NaN 1 0 Median 0.95192 0.85922 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2587300 1341100 1246200 1927200 961890 965280 660130 379190 280930 0 0 0 0 0 0 0 0 0 0 0 0 38287 3288 40222 203128;203129;203130 206504;206505 206504 2 VYQETSEMR STVISYSNTGDGAPKVYQETSEMRSAPGGI GDGAPKVYQETSEMRSAPGGIRETRRTVRD K V Y M R S 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 9 0 1141.5074 Q15773;F5H0Y3 Q15773 120 128 MLF2 Myeloid leukemia factor 2 yes no 2 0.017009 42.109 By matching By MS/MS 1 1 1.0196 0.98624 0.25334 2 Median 1.0243 0.98801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.015 0.98447 NaN 1 0 Median NaN NaN NaN 0 0 Median 1591500 803850 787640 871600 509660 361940 0 0 0 0 0 0 0 0 0 719890 294190 425690 0 0 0 38288 2969 40223 203131;203132 206506;206507 206506 2 VYQNHVQHLISEK RRIPFDLLSTLEAEKVYQNHVQHLISEKRR EKVYQNHVQHLISEKRRVEMKEKFKKTLEK K V Y E K R 0 0 1 0 0 2 1 0 2 1 1 1 0 0 0 1 0 0 1 2 0 0 13 0 1593.8263 Q13017;A0A0A0MSK6 Q13017 413 425 ARHGAP5 Rho GTPase-activating protein 5 yes no 3 0.061507 11.976 By matching By MS/MS 1 2 1.0703 0.92264 24.019 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2971 1.3814 NaN 1 0 Median 1.0445 0.91173 1.6822 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3907200 2074500 1832700 0 0 0 0 0 0 1140700 614910 525740 2766500 1459600 1306900 0 0 0 0 0 0 38289 183 40224 203133;203134;203135 206508 206508 1 VYQWDDPDPR AFEVSENGNLVVSGKVYQWDDPDPRLFDHP VVSGKVYQWDDPDPRLFDHPESPTPNPTEP K V Y P R L 0 1 0 3 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 10 0 1289.5677 P49327;A0A0U1RQF0 P49327 958 967 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00039551 78.334 By MS/MS By MS/MS By matching 3 2 1 0.70176 0.71518 14.313 6 Median 0.72651 0.68516 5.9215 3 0 Plateau 1.0295 0.84939 0.076996 2 0 Median 0.67429 0.74651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 99819000 52068000 47751000 60920000 33329000 27590000 35208000 16672000 18535000 3691300 2066500 1624800 0 0 0 0 0 0 0 0 0 38290 2377 40225 203136;203137;203138;203139;203140;203141 206509;206510;206511;206512;206513;206514;206515;206516;206517;206518;206519 206510 11 VYREDDTATEETHPVSWKPEIIK SESRLLTAEADKTIKVYREDDTATEETHPV TEETHPVSWKPEIIKRKRF___________ K V Y I K R 1 1 0 2 0 0 4 0 1 2 0 2 0 0 2 1 3 1 1 2 0 0 23 2 2742.3501 O43660 O43660 488 510 PLRG1 Pleiotropic regulator 1 yes yes 4;5 4.8059E-12 59.356 By MS/MS By matching By matching 2 3 1 0.76944 0.85809 24.4 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57154 0.70282 28.229 2 0 Median 0.90468 0.96289 22.899 2 0 Median 0.78913 0.9027 NaN 1 0 Median NaN NaN NaN 0 0 Median 42696000 25356000 17340000 0 0 0 0 0 0 35913000 21890000 14022000 4964900 2506300 2458600 1818400 959330 859100 0 0 0 38291 1580 40226 203142;203143;203144;203145;203146;203147 206520;206521 206520 2 VYRIEGDETSTEAATR RPSRADQFEYVMYGKVYRIEGDETSTEAAT YRIEGDETSTEAATRLSAYVSYGGLLMRLQ K V Y T R L 2 2 0 1 0 0 3 1 0 1 0 0 0 0 0 1 3 0 1 1 0 0 16 1 1796.8541 C9JLU1;P52434 C9JLU1 96 111 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes no 2;3 1.8115E-10 105.31 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1.1038 1.0299 7.6275 7 Median 1.1073 1.1606 0.45103 2 0 Median 1.0889 0.99619 NaN 1 0 Median 1.0158 1.1031 9.7153 2 0 Median 1.1404 1.0211 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1926 1.0095 NaN 1 0 Median 54767000 26034000 28733000 22185000 10632000 11553000 7698500 3518600 4180000 22397000 10766000 11631000 1980100 909390 1070700 0 0 0 506910 208730 298180 38292 707 40227 203148;203149;203150;203151;203152;203153;203154 206522;206523;206524;206525;206526;206527;206528;206529;206530;206531;206532 206530 11 VYSFQNR QESLKNGSATGGGNKVYSFQNRKHSEKMAK SATGGGNKVYSFQNRKHSEKMAKLASELAK K V Y N R K 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 7 0 912.44537 Q13416;B8ZZ80 Q13416 94 100 ORC2 Origin recognition complex subunit 2 yes no 2 0.018479 62.714 By MS/MS By matching 2 1 1.407 1.2809 8.2353 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2468 1.2822 11.646 2 0 Median 1.4701 1.2809 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3921100 1810900 2110200 0 0 0 0 0 0 3459700 1620000 1839700 461400 190910 270490 0 0 0 0 0 0 38293 2813 40228 203155;203156;203157 206533;206534 206533 2 VYSLDDIR RIVDLHSRIEESIDRVYSLDDIRRYLLFAR IEESIDRVYSLDDIRRYLLFARQFKPKISK R V Y I R R 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 8 0 979.49746 Q14566 Q14566 566 573 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.039331 37.021 By MS/MS By matching 1 1 0.94543 0.90967 33.81 2 Median NaN NaN NaN 0 0 Median 1.3349 1.1553 NaN 1 0 Median 0.66961 0.71624 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9455100 4384800 5070300 0 0 0 5147600 1983800 3163800 4307600 2401100 1906500 0 0 0 0 0 0 0 0 0 38294 2881 40229 203158;203159 206535 206535 1 VYSLDDIRR RIVDLHSRIEESIDRVYSLDDIRRYLLFAR EESIDRVYSLDDIRRYLLFARQFKPKISKE R V Y R R Y 0 2 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 1 1135.5986 Q14566 Q14566 566 574 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.00074195 117.93 By MS/MS By matching By MS/MS 1 1 1 0.9839 0.97345 12.39 3 Median 1.0406 1.1561 NaN 1 0 Median 0.9839 0.97345 NaN 1 0 Median 0.78669 0.90901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35814000 17301000 18514000 14471000 6217300 8253600 6533900 3149400 3384500 14809000 7933900 6875500 0 0 0 0 0 0 0 0 0 38295 2881 40230 203160;203161;203162 206536;206537 206537 2 VYSLFLDESR RKRKGTEVQVDDIKRVYSLFLDESRSTQYM DDIKRVYSLFLDESRSTQYMKEYQDAFLFN R V Y S R S 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 10 0 1227.6136 Q9Y230 Q9Y230 429 438 RUVBL2 RuvB-like 2 yes yes 2 0.00035174 120.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 3 3 3 1.3081 1.1516 27.138 13 Median 1.204 1.1445 0.87998 2 0 Median 1.6505 1.5893 56.247 2 0 Median 1.1807 1.1911 27.651 3 0 Median 1.3081 1.0819 2.2405 3 0 Median 1.4672 1.5681 20.507 3 0 Median NaN NaN NaN 0 0 Median 201590000 92445000 109140000 45084000 20219000 24865000 37575000 16651000 20923000 92158000 44141000 48017000 14552000 6291700 8260200 12217000 5142500 7074100 0 0 0 38296 4368 40231 203163;203164;203165;203166;203167;203168;203169;203170;203171;203172;203173;203174;203175 206538;206539;206540;206541;206542;206543;206544;206545;206546;206547;206548;206549 206538 12 VYSPHVLNLTLIDLPGITK TGTNKGISPVPINLRVYSPHVLNLTLIDLP HVLNLTLIDLPGITKVPVGDQPPDIEYQIK R V Y T K V 0 0 1 1 0 0 0 1 1 2 4 1 0 0 2 1 2 0 1 2 0 0 19 0 2092.1932 P50570 P50570 124 142 DNM2 Dynamin-2 no no 2;3 1.7596E-05 52.784 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 2 2 1 2 0.76489 0.70811 26.037 10 Median 0.71661 0.71466 11.181 2 0 Median 0.6827 0.59758 NaN 1 1 Median 0.73292 0.79908 6.0351 2 0 Median 0.76951 0.66779 7.1732 2 0 Median 1.526 1.5066 NaN 1 0 Median 0.82896 0.69602 3.555 2 0 Median 26675000 15065000 11610000 4933300 3031200 1902100 4098500 2324000 1774500 16115000 8938100 7176500 269170 155980 113180 215580 96063 119510 1043700 519300 524360 38297 2417 40232 203176;203177;203178;203179;203180;203181;203182;203183;203184;203185;203186 206550;206551;206552;206553;206554;206555;206556;206557 206551 8 VYSRGDSEPLSEAAQAHTR ASDRLQRRVEELCQRVYSRGDSEPLSEAAQ GDSEPLSEAAQAHTRELGRENRRLQDLATQ R V Y T R E 3 2 0 1 0 1 2 1 1 0 1 0 0 0 1 3 1 0 1 1 0 0 19 1 2072.9875 O75150;H3BP71;H3BS50 O75150 213 231 RNF40 E3 ubiquitin-protein ligase BRE1B yes no 4 9.373E-07 53.554 By MS/MS 1 0.97907 1.1908 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97907 1.1908 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3469100 1952000 1517100 0 0 0 0 0 0 3469100 1952000 1517100 0 0 0 0 0 0 0 0 0 38298 1648 40233 203187 206558;206559 206558 2 VYSSHTGYPGGFR NTRHIAFSGNKWEQKVYSSHTGYPGGFRQV QKVYSSHTGYPGGFRQVTAAQLHLRDPVAI K V Y F R Q 0 1 0 0 0 0 0 3 1 0 0 0 0 1 1 2 1 0 2 1 0 0 13 0 1426.663 Q9BYD1;E5RJI7 Q9BYD1 76 88 MRPL13 39S ribosomal protein L13, mitochondrial yes no 2;3 0.00029452 59.57 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0407 0.9999 15.78 5 Median 1.0014 0.99067 0.44126 2 0 Median 1.6419 1.3616 NaN 1 0 Median 1.0407 0.9999 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6298 1.2836 NaN 1 0 Median 27799000 13420000 14379000 10652000 5352800 5299000 5939700 2370300 3569400 11041000 5637100 5404200 0 0 0 0 0 0 165650 59528 106120 38299 3888 40234 203188;203189;203190;203191;203192 206560;206561;206562;206563 206563 4 VYSTALSSFLTK GPQAASCLDLNLVTRVYSTALSSFLTKRNS VTRVYSTALSSFLTKRNSPLTVPMFLSLFS R V Y T K R 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 1 1 0 0 12 0 1315.7024 Q9BQG0;I3L1L3 Q9BQG0 977 988 MYBBP1A Myb-binding protein 1A yes no 2 0.00011203 90.685 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 2 3 1 1.1229 1.0784 13.978 10 Median NaN NaN NaN 0 0 Median 1.1944 1.0254 NaN 1 0 Median 1.0797 1.1509 6.13 3 0 Plateau 1.1316 0.99057 0.77219 2 0 Median 1.1454 1.1845 17.531 3 0 Median 1.1622 0.98388 NaN 1 0 Median 52816000 25097000 27720000 0 0 0 1270200 594820 675360 24701000 11517000 13185000 1045100 486490 558650 24722000 11991000 12731000 1077700 508170 569520 38300 3789 40235 203193;203194;203195;203196;203197;203198;203199;203200;203201;203202 206564;206565;206566;206567;206568;206569;206570 206568 7 VYSTALSSFLTKR GPQAASCLDLNLVTRVYSTALSSFLTKRNS TRVYSTALSSFLTKRNSPLTVPMFLSLFSR R V Y K R N 1 1 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 1 1 0 0 13 1 1471.8035 Q9BQG0;I3L1L3 Q9BQG0 977 989 MYBBP1A Myb-binding protein 1A yes no 3 0.0030278 49.929 By MS/MS 1 0.56356 0.63699 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56356 0.63699 NaN 1 1 Median NaN NaN NaN 0 0 Median 3771700 1914300 1857300 0 0 0 0 0 0 0 0 0 0 0 0 3771700 1914300 1857300 0 0 0 38301 3789 40236 203203 206571 206571 1 VYSTSVTGSR ______________________________ MSGLRVYSTSVTGSREIKSQQSEVTRILDG R V Y S R E 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 3 2 0 1 2 0 0 10 0 1055.5247 Q5T123;Q9H299 Q5T123 6 15 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes no 2 0.00033784 85.731 By MS/MS By MS/MS By matching By MS/MS By matching 2 2 1 1 1 1.2224 1.0746 11.667 7 Median 1.2366 1.181 7.944 2 0 Median 1.2303 1.0192 7.4847 2 0 Median 1.2224 1.222 NaN 1 0 Median 1.1451 0.90513 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2278 1.0537 NaN 1 0 Median 27424000 12328000 15096000 15812000 7001400 8810200 8213700 3767100 4446600 1913000 826920 1086000 659970 327060 332910 0 0 0 825770 405280 420490 38302 3078 40237 203204;203205;203206;203207;203208;203209;203210 206572;206573;206574;206575;206576;206577 206575 6 VYSVLSDR GDKEDATRRFQILGKVYSVLSDREQRAVYD RFQILGKVYSVLSDREQRAVYDEQGTVDED K V Y D R E 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 937.4869 Q8WXX5 Q8WXX5 65 72 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 3.3458E-06 121.99 By MS/MS By MS/MS 2 1 1.0906 0.9834 12.421 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1017 1.0737 NaN 1 1 Median 1.0797 0.90071 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20376000 9986700 10389000 0 0 0 0 0 0 10705000 5438600 5266000 9671300 4548100 5123300 0 0 0 0 0 0 38303 3522 40238 203211;203212;203213 206578;206579;206580 206578 3 VYSVLSDREQR GDKEDATRRFQILGKVYSVLSDREQRAVYD ILGKVYSVLSDREQRAVYDEQGTVDEDSPV K V Y Q R A 0 2 0 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 11 1 1350.6892 Q8WXX5 Q8WXX5 65 75 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 1.363E-10 178.08 By matching By matching By matching By MS/MS By MS/MS 2 1 1 2 2 1.1124 1.154 14.284 8 Median 1.0772 1.1597 5.3299 2 0 Median 1.2809 1.179 NaN 1 0 Median 1.3671 1.427 NaN 1 0 Median 1.0726 1.0009 4.3724 2 0 Median 1.1934 1.284 18.136 2 0 Median NaN NaN NaN 0 0 Median 52050000 24430000 27620000 14573000 6572200 8001200 2016900 788580 1228300 2988700 1496400 1492300 25647000 12510000 13138000 6823300 3063100 3760200 0 0 0 38304 3522 40239 203214;203215;203216;203217;203218;203219;203220;203221 206581;206582;206583;206584;206585 206583 5 VYSYALALK LDALVAEEHLTVDARVYSYALALKHANAKP LTVDARVYSYALALKHANAKPFEVPFLKF_ R V Y L K H 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 1 0 0 9 0 1026.575 A6NFX8;Q9UKK9 A6NFX8 210 218 NUDT5 ADP-sugar pyrophosphatase yes no 2 0.0036618 63.565 By MS/MS By MS/MS 3 1 1.1006 0.9701 9.3041 4 Median 1.1116 1.0326 10.034 3 1 Median 1.0897 0.91136 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 71837000 36785000 35052000 60267000 30651000 29615000 11571000 6133600 5437100 0 0 0 0 0 0 0 0 0 0 0 0 38305 511 40240 203222;203223;203224;203225 206586;206587;206588;206589 206587 4 VYTDVNTHRPR ______________________________ SRARVYTDVNTHRPREYWDYESHVVEWGNQ R V Y P R E 0 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 2 0 1 2 0 0 11 1 1356.6898 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1;A0A2R8YDY7;A0A2R8YCK2;A0A2R8Y7T1;A0A2R8YF47;V9GY80;A0A2R8YEL7;A0A2R8Y797;A0A2R8Y3W6;A0A2R8YCC9 P68400 11 21 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3 0.0023732 42.395 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 1 1.018 1.0098 47.818 8 Median 1.0309 1.0563 2.1837 2 0 Median 1.052 0.98246 NaN 1 0 Median 0.90361 0.92614 10.327 3 0 Median 1.0485 0.92293 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.1746 3.6908 NaN 1 0 Median 11236000 5274400 5961900 976290 490070 486220 4142900 1914800 2228100 3690400 1926600 1763800 1568400 796170 772230 0 0 0 858250 146720 711530 38306 394 40241 203226;203227;203228;203229;203230;203231;203232;203233 206590;206591;206592;206593;206594 206590 5 VYTHEVVTLWYR LADFGLARAFGIPIRVYTHEVVTLWYRSPE PIRVYTHEVVTLWYRSPEVLLGSARYSTPV R V Y Y R S 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 2 1 2 3 0 0 12 0 1564.8038 P06493;A0A087WZZ9;E5RIU6 P06493 159 170 CDK1 Cyclin-dependent kinase 1 yes no 3 0.00016723 67.456 By MS/MS By MS/MS By MS/MS By matching By matching 1 1 1 1 1 1.4455 1.3151 13.531 5 Median 1.4455 1.3532 NaN 1 0 Median 1.2801 1.0649 NaN 1 0 Median 1.5604 1.5267 NaN 1 0 Median 1.4243 1.197 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4918 1.3151 NaN 1 0 Median 32233000 13139000 19094000 15893000 6307200 9585500 6653400 2872500 3780900 8946200 3679800 5266400 376500 143010 233490 0 0 0 364590 137040 227550 38307 1871 40242 203234;203235;203236;203237;203238 206595;206596;206597 206595 3 VYTITPLLSDNR LEQDDQVSPSSTFCKVYTITPLLSDNREKR FCKVYTITPLLSDNREKRGLALDGKLKHED K V Y N R E 0 1 1 1 0 0 0 0 0 1 2 0 0 0 1 1 2 0 1 1 0 0 12 0 1390.7456 P32121;Q68DZ5;K7EL17 P32121 272 283 ARRB2;DKFZp686L0365 Beta-arrestin-2 yes no 2 0.0076848 77.533 By matching By MS/MS 1 2 1.1671 1.2994 31.707 3 Median 0.75564 0.76628 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2536 1.3256 2.8292 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6429200 3468200 2961000 2642400 1619100 1023300 0 0 0 3786800 1849100 1937700 0 0 0 0 0 0 0 0 0 38308 2216 40243 203239;203240;203241 206598 206598 0 VYTLSVSGDR PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT SQPEKVYTLSVSGDRLIVGTAGRRVLVWDL K V Y D R L 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 2 1 0 1 2 0 0 10 0 1095.556 O43684;J3QT28 O43684 140 149 BUB3 Mitotic checkpoint protein BUB3 yes no 2 6.1064E-07 157.86 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 2 1.114 0.96784 28.319 12 Median 0.96585 0.96681 NaN 1 0 Median 1.1178 0.95459 2.1001 2 1 Median 1.0562 1.0857 4.7357 3 0 Median 1.1349 0.93728 23.833 4 0 Median 1.2164 1.2726 77.411 2 1 Median NaN NaN NaN 0 0 Median 208910000 97937000 110980000 28744000 14390000 14354000 12007000 5541000 6465700 101430000 49683000 51743000 51158000 23300000 27858000 15581000 5023400 10558000 0 0 0 38309 1357 40244 203242;203243;203244;203245;203246;203247;203248;203249;203250;203251;203252;203253 206599;206600;206601;206602;206603;206604;206605;206606;206607;206608;206609;206610;206611;206612;206613;206614;206615;206616 206612 18 VYTPSNADIGLR SSPSSSWTETDVEERVYTPSNADIGLRLKL EERVYTPSNADIGLRLKLHCTPGDGQRFGH R V Y L R L 1 1 1 1 0 0 0 1 0 1 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1304.6725 F6T1Q0;Q6L8Q7 F6T1Q0 234 245 PDE12 2,5-phosphodiesterase 12 yes no 2 5.5654E-06 116.3 By MS/MS By matching 1 1 0.63099 0.56662 66.739 2 Median 0.96278 0.90833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.41354 0.35346 NaN 1 0 Median 26747000 15231000 11517000 26336000 14940000 11397000 0 0 0 0 0 0 0 0 0 0 0 0 411120 291220 119900 38310 1050 40245 203254;203255 206617 206617 1 VYTQVEFK PNYQPPEGRYNDITKVYTQVEFKR______ RYNDITKVYTQVEFKR______________ K V Y F K R 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 1 2 0 0 8 0 1012.5229 Q9NQ50 Q9NQ50 198 205 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 2 0.073325 46.016 By MS/MS 1 1.1671 1.0094 NaN 1 Median NaN NaN NaN 0 0 Median 1.1671 1.0094 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1859900 833210 1026700 0 0 0 1859900 833210 1026700 0 0 0 0 0 0 0 0 0 0 0 0 38311 4060 40246 203256 206618 206618 1 VYTQVEFKR PNYQPPEGRYNDITKVYTQVEFKR______ YNDITKVYTQVEFKR_______________ K V Y K R - 0 1 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 1 2 0 0 9 1 1168.6241 Q9NQ50 Q9NQ50 198 206 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 2 0.0018202 83.265 By MS/MS 1 1.3737 1.419 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3737 1.419 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3564600 1600400 1964200 0 0 0 0 0 0 3564600 1600400 1964200 0 0 0 0 0 0 0 0 0 38312 4060 40247 203257 206619;206620 206619 2 VYTVGPDYAHAEAR YIYEEFMPTDGTDVKVYTVGPDYAHAEARK KVYTVGPDYAHAEARKSPALDGKVERDSEG K V Y A R K 3 1 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 2 2 0 0 14 0 1547.7369 A0A087WZV0;O43314;F8W9A8;B7WPL9;Q6PFW1 A0A087WZV0 249 262 PPIP5K2;PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2;Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 no no 3 0.056724 27.029 By MS/MS By matching 1 1 0.91552 0.88537 13.904 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88964 0.97684 NaN 1 0 Median 0.94215 0.80247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4921000 2444100 2476900 0 0 0 0 0 0 3081100 1594300 1486800 1839900 849760 990140 0 0 0 0 0 0 38313 99 40248 203258;203259 206621 206621 0 VYVGNLGNNGNK ______________________________ DCKVYVGNLGNNGNKTELERAFGYYGPLRS K V Y N K T 0 0 4 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1247.6258 P84103;A0A087X2D0 P84103 12 23 SRSF3 Serine/arginine-rich splicing factor 3 yes no 2 4.5589E-06 128.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1744 1.1716 38.599 4 Linear 0.65474 0.61339 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1543 1.0818 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93948 0.95744 NaN 1 1 Median 0.56532 0.47253 NaN 1 1 Median 30578000 15485000 15093000 3493900 1545400 1948600 0 0 0 12238000 6131600 6106300 0 0 0 12099000 5972100 6126500 2747500 1835700 911750 38314 2668 40249 203260;203261;203262;203263;203264 206622;206623;206624;206625;206626;206627;206628 206626 7 VYVGNLGNNGNKTELER ______________________________ VGNLGNNGNKTELERAFGYYGPLRSVWVAR K V Y E R A 0 1 4 0 0 0 2 3 0 0 2 1 0 0 0 0 1 0 1 2 0 0 17 1 1875.9439 P84103;A0A087X2D0 P84103 12 28 SRSF3 Serine/arginine-rich splicing factor 3 yes no 2;3 3.94E-14 155.22 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 3 2 7 1 0.98744 1.0388 16.241 17 Median 1.1 1.1429 13.857 3 0 Plateau 1.0659 0.98336 NaN 1 0 Median 0.98744 1.0528 20.313 3 0 Plateau 1.2579 1.1135 3.91 2 0 Median 0.92093 1.0388 16.406 7 0 Median 1.4943 1.3301 NaN 1 0 Median 442130000 211810000 230320000 77506000 36258000 41248000 12734000 6316600 6417100 103360000 51093000 52270000 45651000 19870000 25781000 201170000 97764000 103410000 1710300 509980 1200400 38315 2668 40250 203265;203266;203267;203268;203269;203270;203271;203272;203273;203274;203275;203276;203277;203278;203279;203280;203281 206629;206630;206631;206632;206633;206634;206635;206636;206637;206638;206639;206640;206641;206642;206643;206644;206645;206646;206647;206648;206649;206650;206651 206646 23 VYVGNLGTGAGK ______________________________ ETKVYVGNLGTGAGKGELERAFSYYGPLRT K V Y G K G 1 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 1 0 1 2 0 0 12 0 1134.6033 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 13 24 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2 1.4966E-06 119.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 5 5 1.2873 1.1119 16.371 14 Median NaN NaN NaN 0 0 Median 1.2268 1.0532 9.6755 2 0 Median 1.0074 0.9717 NaN 1 0 Median 1.1567 0.9519 0.62303 2 0 Median 1.1804 1.2264 13.861 4 0 Median 1.434 1.1868 16.733 5 0 Median 345060000 155170000 189890000 0 0 0 12712000 5320000 7392500 43479000 20650000 22829000 37504000 16970000 20534000 132480000 63347000 69130000 118890000 48884000 70006000 38316 214 40251 203282;203283;203284;203285;203286;203287;203288;203289;203290;203291;203292;203293;203294;203295;203296 206652;206653;206654;206655;206656;206657;206658;206659;206660;206661;206662;206663;206664;206665;206666;206667;206668;206669;206670;206671;206672;206673;206674;206675;206676 206661 24 VYVGNLGTGAGKGELER ______________________________ VGNLGTGAGKGELERAFSYYGPLRTVWIAR K V Y E R A 1 1 1 0 0 0 2 5 0 0 2 1 0 0 0 0 1 0 1 2 0 0 17 1 1718.8951 A0A0B4J1Z1;C9JAB2;Q16629 A0A0B4J1Z1 13 29 SRSF7 Serine/arginine-rich splicing factor 7 yes no 2;3 3.1825E-23 182.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 2 13 5 1.069 1.154 12.494 24 Median 1.1052 1.1167 4.4973 2 0 Median 1.238 1.1029 NaN 1 1 Median 1.0329 1.1193 NaN 1 0 Median 1.2276 1.1585 0.015458 2 0 Median 1.0428 1.1788 10.278 13 2 Median 1.0853 0.9641 12.001 5 0 Median 984860000 460320000 524540000 52543000 24439000 28105000 10027000 3861200 6165600 17275000 8207900 9067300 24868000 10840000 14028000 850160000 398940000 451220000 29983000 14033000 15950000 38317 214 40252 203297;203298;203299;203300;203301;203302;203303;203304;203305;203306;203307;203308;203309;203310;203311;203312;203313;203314;203315;203316;203317;203318;203319;203320 206677;206678;206679;206680;206681;206682;206683;206684;206685;206686;206687;206688;206689;206690;206691;206692;206693;206694;206695;206696;206697;206698;206699;206700;206701;206702;206703;206704;206705;206706;206707;206708;206709;206710;206711;206712;206713;206714;206715;206716;206717 206693 41 VYVGSIYYELGEDTIR QMAAQRQRALAIMCRVYVGSIYYELGEDTI YVGSIYYELGEDTIRQAFAPFGPIKSIDMS R V Y I R Q 0 1 0 1 0 0 2 2 0 2 1 0 0 0 0 1 1 0 3 2 0 0 16 0 1875.9254 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6 106 121 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2;3 9.6987E-10 116.54 By MS/MS By MS/MS By MS/MS By matching 1 4 1 3 0.85939 0.80573 49.123 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85939 0.85529 25.702 4 1 Median 0.29486 0.25205 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0004 0.86075 41.783 3 0 Median 89049000 44799000 44250000 0 0 0 0 0 0 62270000 31101000 31169000 23793000 12135000 11659000 0 0 0 2985400 1563300 1422100 38318 284 40253 203321;203322;203323;203324;203325;203326;203327;203328;203329 206718;206719;206720;206721;206722;206723;206724;206725;206726 206720 9 VYVIEPHSMEFAPCQVEAR QAHDVQNPLHFGEMKVYVIEPHSMEFAPCQ EPHSMEFAPCQVEARVGQALELPLRISGLM K V Y A R V 2 1 0 0 1 1 3 0 1 1 0 0 1 1 2 1 0 0 1 3 0 0 19 0 2261.0609 Q8TEM1 Q8TEM1 530 548 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 2.3666E-08 77.39 By matching By MS/MS 1 1 0.86694 0.82073 21.854 2 Median NaN NaN NaN 0 0 Median 1.1268 0.95788 NaN 1 0 Median 0.667 0.70321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14729000 8597200 6132100 0 0 0 2502700 1141900 1360800 12227000 7455300 4771300 0 0 0 0 0 0 0 0 0 38319 3477 40254 203330;203331 206727;206728 206727 2 VYVIGSFVDK TADSPNVMTTFRHDKVYVIGSFVDKSMQPG FRHDKVYVIGSFVDKSMQPGTSLAKAKRLN K V Y D K S 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0 1 3 0 0 10 0 1125.607 Q7L0Y3 Q7L0Y3 306 315 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.001604 64.04 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.5676 1.459 21.439 4 Median 1.2151 1.1263 NaN 1 0 Median 1.4994 1.2778 NaN 1 0 Median 1.6389 1.7678 NaN 1 0 Median 1.9323 1.6659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28111000 11503000 16607000 12029000 5737300 6291800 12655000 4765400 7889900 3294000 950090 2343900 132340 50617 81719 0 0 0 0 0 0 38320 3218 40255 203332;203333;203334;203335 206729;206730;206731 206730 3 VYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKVYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K V Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 0 1 1 2 1 0 2 2 0 0 23 1 2614.3166 Q02880;E9PCY5 Q02880 156 178 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 3 0.0751 1.6567 By MS/MS By matching 2 1 0.75206 0.85721 6.9643 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72545 0.82932 4.6779 2 0 Median NaN NaN NaN 0 0 Median 0.82463 0.92219 NaN 1 0 Median NaN NaN NaN 0 0 Median 2431800 1377900 1053900 0 0 0 0 0 0 1782500 986630 795880 0 0 0 649280 391270 258010 0 0 0 38321 2704 40256 203336;203337;203338 206732 206732 1 VYVQHLLK LTQLNVAFSREQSHKVYVQHLLKQDREHLW SREQSHKVYVQHLLKQDREHLWKLIEGGAH K V Y L K Q 0 0 0 0 0 1 0 0 1 0 2 1 0 0 0 0 0 0 1 2 0 0 8 0 998.5913 P16435;H0Y4R2;E7EMD0 P16435 603 610 POR NADPH--cytochrome P450 reductase yes no 2 0.018429 47.916 By matching By MS/MS 1 2 1.3082 1.1783 17.855 3 Median 1.0618 1.0164 NaN 1 0 Median 1.4823 1.3072 14.684 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6958600 2874500 4084100 3777100 1695900 2081200 3181500 1178600 2002900 0 0 0 0 0 0 0 0 0 0 0 0 38322 2030 40257 203339;203340;203341 206733 206733 1 VYVSDNIR LYEITIEVFDKFSNKVYVSDNIRIETVLPA FDKFSNKVYVSDNIRIETVLPAEFFEVLSS K V Y I R I 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 2 0 0 8 0 964.49779 Q8TEM1 Q8TEM1 380 387 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0028236 104.45 By MS/MS By MS/MS By MS/MS 1 2 2 0.94677 0.98141 18.766 5 Median NaN NaN NaN 0 0 Median 0.80209 0.65245 NaN 1 0 Median 0.89822 0.97062 5.8792 2 0 Median 1.1442 0.99989 2.6377 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28860000 15466000 13393000 0 0 0 9927600 5649100 4278400 16046000 8517000 7528600 2886300 1300100 1586100 0 0 0 0 0 0 38323 3477 40258 203342;203343;203344;203345;203346 206734;206735;206736;206737;206738;206739;206740 206735 7 VYVSGLMK DFVLVAETTMARIRRVYVSGLMKGGADLFV TMARIRRVYVSGLMKGGADLFVENMPGFPD R V Y M K G 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 1 2 0 0 8 0 895.48372 Q9HDC9;H0Y512 Q9HDC9 284 291 APMAP Adipocyte plasma membrane-associated protein yes no 2 0.01208 55.676 By MS/MS By MS/MS 1 2 1.5044 1.2962 10.427 3 Median 1.2488 1.1694 NaN 1 0 Median 1.5966 1.3665 7.4672 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16252000 7044300 9207800 7373600 3221800 4151800 8878500 3822400 5056100 0 0 0 0 0 0 0 0 0 0 0 0 38324 4039 40259 203347;203348;203349 206741;206742 206741 2 VYVSLPNEETR PQELDEAVLRRFIKRVYVSLPNEETRLLLL FIKRVYVSLPNEETRLLLLKNLLCKQGSPL R V Y T R L 0 1 1 0 0 0 2 0 0 0 1 0 0 0 1 1 1 0 1 2 0 0 11 0 1305.6565 A0A2R8Y7K2;A0A2R8Y481;A0A2R8YGN6;A0A2R8YCL5;A0A2R8Y4I8;A0A2U3TZR0;Q9UBP0;A0A2R8Y5N9;A0A2R8YFW8 A0A2R8Y7K2 231 241 SPAST Spastin yes no 2 0.0039952 48.796 By MS/MS 1 0.98395 0.85014 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98395 0.85014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1070900 551610 519300 0 0 0 0 0 0 0 0 0 1070900 551610 519300 0 0 0 0 0 0 38325 361 40260 203350 206743 206743 1 VYVVGTAHFSDDSKR LPRTVTQLVAEDGSRVYVVGTAHFSDDSKR VYVVGTAHFSDDSKRDVVKTIREVQPDVVV R V Y K R D 1 1 0 2 0 0 0 1 1 0 0 1 0 1 0 2 1 0 1 3 0 0 15 1 1679.8267 J3KPT4;Q9H4I3 J3KPT4 75 89 TRABD TraB domain-containing protein yes no 3 0.011302 33.842 By MS/MS 1 0.37187 0.39844 NaN 1 Median 0.37187 0.39844 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8865200 7034100 1831100 8865200 7034100 1831100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38326 1311 40261 203351 206744 206744 1 VYWNDGLDQYR QGDWLIGGDLQVLDRVYWNDGLDQYRLTPT VLDRVYWNDGLDQYRLTPTELKQKFKDMNA R V Y Y R L 0 1 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 1 2 1 0 0 11 0 1427.647 O43252 O43252 387 397 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 1.8126E-12 145.17 By MS/MS 1 1.229 1.1736 NaN 1 Median 1.229 1.1736 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9394300 4218900 5175400 9394300 4218900 5175400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38327 1561 40262 203352 206745 206745 1 VYYDGTVEQHPFGEAAYPADGADAGQK VYGHPSHLESEFEMKVYYDGTVEQHPFGEA GEAAYPADGADAGQKHAGAPEDASQEEESV K V Y Q K H 5 0 0 3 0 2 2 4 1 0 0 1 0 1 2 0 1 0 3 2 0 0 27 0 2855.2675 Q7Z4R8 Q7Z4R8 133 159 C6orf120 UPF0669 protein C6orf120 yes yes 3 1.1256E-08 41.763 By MS/MS By matching 1 1 0.77299 0.6894 19.071 2 Median 0.647 0.60243 NaN 1 0 Median 0.92352 0.78893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8827400 5637600 3189800 7663800 5141500 2522300 1163600 496060 667520 0 0 0 0 0 0 0 0 0 0 0 0 38328 3247 40263 203353;203354 206746 206746 1 VYYDLTR QNPENVKRLLFCTGKVYYDLTRERKARDMV RLLFCTGKVYYDLTRERKARDMVGQVAITR K V Y T R E 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 7 0 928.46543 E9PDF2;E9PCR7;Q02218;A0A0D9SFS3;E9PFG7 E9PDF2 919 925 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes no 2 0.057914 49.358 By MS/MS 1 1.2013 1.0098 NaN 1 Median NaN NaN NaN 0 0 Median 1.2013 1.0098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6517200 3569500 2947700 0 0 0 6517200 3569500 2947700 0 0 0 0 0 0 0 0 0 0 0 0 38329 912 40264 203355 206747 206747 1 VYYFNHITNASQWER LPPGWEKRMSRSSGRVYYFNHITNASQWER VYYFNHITNASQWERPSGNSSSGGKNGQGE R V Y E R P 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 1 1 1 2 1 0 0 15 0 1926.9013 Q13526;K7EMU7 Q13526 22 36 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 2;3 0.0001039 50.155 By matching By matching By MS/MS By matching 1 1 3 1 0.99558 0.83245 21.241 6 Median 0.7617 0.75859 NaN 1 0 Median 1.0921 0.91351 NaN 1 0 Median 1.0839 1.0976 25.452 3 0 Median 0.91443 0.74945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26122000 12373000 13749000 3995200 1894600 2100600 597510 273840 323660 21165000 10021000 11144000 364290 184040 180250 0 0 0 0 0 0 38330 2822 40265 203356;203357;203358;203359;203360;203361 206748;206749;206750 206748 3 VYYFNHITNASQWERPSGNSSSGGK LPPGWEKRMSRSSGRVYYFNHITNASQWER SQWERPSGNSSSGGKNGQGEPARVRCSHLL R V Y G K N 1 1 3 0 0 1 1 3 1 1 0 1 0 1 1 5 1 1 2 1 0 0 25 1 2785.2845 Q13526;K7EMU7 Q13526 22 46 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes no 3;4 2.9909E-36 134.81 By MS/MS By MS/MS By MS/MS By matching 2 1 3 1 0.93734 0.88973 9.2592 7 Median 0.87846 0.86142 9.2057 2 0 Median 0.96431 0.85092 NaN 1 0 Median 0.873 0.90124 11.121 3 0 Median 0.9885 0.87503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152610000 78091000 74518000 69025000 36496000 32529000 4419900 2243600 2176300 75855000 37861000 37994000 3308500 1490100 1818500 0 0 0 0 0 0 38331 2822 40266 203362;203363;203364;203365;203366;203367;203368 206751;206752;206753;206754;206755;206756;206757;206758 206754 8 VYYLSWLR LNVLVTISGKKDKLRVYYLSWLRNKILHND GKKDKLRVYYLSWLRNKILHNDPEVEKKQG R V Y L R N 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 2 1 0 0 8 0 1098.5862 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;E7EN19;A0A0D9SEY1;O95819;Q8N4C8;Q9UKE5 C9J840 739 746 MAP4K4;MINK1;TNIK Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1;TRAF2 and NCK-interacting protein kinase yes no 2 0.012659 54.549 By MS/MS By matching By matching 2 1 2 1.3517 1.3669 14.093 5 Median 1.2727 1.2802 9.2708 2 0 Median 1.2941 1.0868 NaN 1 0 Median 1.3676 1.4882 4.9631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5104800 2297600 2807200 3240400 1449900 1790400 1077600 514450 563170 786870 333230 453640 0 0 0 0 0 0 0 0 0 38332 262 40267 203369;203370;203371;203372;203373 206759;206760 206759 2 VYYTAGYNSPVK LASILREDGKVFDEKVYYTAGYNSPVKLLN DEKVYYTAGYNSPVKLLNRNNEVWLIQKNE K V Y V K L 1 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 1 0 3 2 0 0 12 0 1360.6663 Q9Y5Z4 Q9Y5Z4 173 184 HEBP2 Heme-binding protein 2 yes yes 2 5.5654E-06 134.25 By MS/MS 1 1.0033 0.92788 NaN 1 Median 1.0033 0.92788 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34400000 17982000 16418000 34400000 17982000 16418000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38333 4473 40268 203374 206761;206762 206761 2 VYYYNAR PTEEIWVENKTPDGKVYYYNARTRESAWTK ENKTPDGKVYYYNARTRESAWTKPDGVKVI K V Y A R T 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 7 0 947.45012 O14776;G3V220 O14776 147 153 TCERG1 Transcription elongation regulator 1 yes no 2 0.0050294 98.513 By matching By MS/MS By matching 1 1 1 1.0453 1.1377 20.001 3 Median NaN NaN NaN 0 0 Median 0.94607 0.80887 NaN 1 0 Median 1.0453 1.1495 NaN 1 0 Median 1.3368 1.1377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14597000 6709300 7887800 0 0 0 2643200 1306400 1336900 9439700 4340700 5099000 2514200 1062300 1451900 0 0 0 0 0 0 38334 1494 40269 203375;203376;203377 206763;206764 206764 2 WAAALEGYR HITTISDETSEQVTRWAAALEGYRKEQERL SEQVTRWAAALEGYRKEQERLGIPYDPIQW R W A Y R K 3 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 9 0 1035.5138 Q06546 Q06546 166 174 GABPA GA-binding protein alpha chain yes yes 2 0.0040114 61.999 By matching By MS/MS By matching By matching 1 1 1 1 1.1582 1.1474 20.659 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3174 1.3908 NaN 1 0 Median 1.0342 0.88757 NaN 1 0 Median 1.1927 1.2864 NaN 1 0 Median 1.1247 1.0235 NaN 1 0 Median 7130500 3225700 3904800 0 0 0 0 0 0 1704300 732620 971690 2649100 1295600 1353500 1929400 840560 1088800 847710 356940 490770 38335 2726 40270 203378;203379;203380;203381 206765;206766 206765 2 WAAAQAEVAPK IGGLRSRHRGSSRGRWAAAQAEVAPKTRLS SRGRWAAAQAEVAPKTRLSSPRGGSSSRRK R W A P K T 5 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 11 0 1140.5928 Q12830;F5GXF5 Q12830 51 61 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2 0.0039963 48.794 By matching By matching By MS/MS 1 1 1 0.88969 0.75003 12.582 3 Median NaN NaN NaN 0 0 Median 0.88969 0.75003 NaN 1 0 Median 0.65583 0.70293 NaN 1 0 Median 0.93515 0.89628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11235000 5934400 5300700 0 0 0 1859000 1039200 819790 7642700 4012500 3630100 1733500 882720 850780 0 0 0 0 0 0 38336 2762 40271 203382;203383;203384 206767 206767 1 WAAVVVPSGEEQR ELVETRPAGDGTFQKWAAVVVPSGEEQRYT QKWAAVVVPSGEEQRYTCHVQHEGLPKPLT K W A Q R Y 2 1 0 0 0 1 2 1 0 0 0 0 0 0 1 1 0 1 0 3 0 0 13 0 1426.7205 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0;A0A0G2JH66;A0A0G2JPA3;D0EV57;A0A140T9X6;A0A140T939;A0A140T8X0;A0A140T9C2;A0A140T9D9;A0A140T9W3;A0A140T9W7;A0A140T9B7;A0A140T9V0;A0A1W2PPR8;P01889;A0A140T951 P04439 268 280 HLA-A;HLA-F;HLA-B HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain no no 2 2.1898E-06 148.32 By MS/MS By MS/MS 1 1 0.98443 0.91253 22.599 2 Median 0.7813 0.77776 NaN 1 0 Median 1.2404 1.0706 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12706000 6595200 6111000 9723500 5265100 4458400 2982700 1330100 1652700 0 0 0 0 0 0 0 0 0 0 0 0 38337 348;339 40272 203385;203386 206768;206769;206770;206771 206769 4 WAAVVVPSGQEQR ELVETRPAGDGTFQKWAAVVVPSGQEQRYT QKWAAVVVPSGQEQRYTCHMQHEGLQEPLT K W A Q R Y 2 1 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 1 0 3 0 0 13 0 1425.7365 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A1W2PRU9 P10321 268 280 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain no no 2 8.722E-07 140.16 By MS/MS By MS/MS By matching 1 1 1 0.94585 0.95543 3.7629 3 Median 0.94585 0.94217 NaN 1 0 Median 1.1201 0.95543 NaN 1 0 Median 0.93243 1.0115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14944000 7734700 7209100 10441000 5405100 5036000 1505400 680810 824550 2997300 1648800 1348500 0 0 0 0 0 0 0 0 0 38338 314 40273 203387;203388;203389 206772;206773;206774 206772 3 WAEQYLK QGQDNLSSVKETQKKWAEQYLKIMGKILDQ SVKETQKKWAEQYLKIMGKILDQGEDFPAS K W A L K I 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 7 0 936.47052 P30040;F8VY02 P30040 198 204 ERP29 Endoplasmic reticulum resident protein 29 yes no 2 0.022525 57.811 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3545 1.1963 14.282 4 Median NaN NaN NaN 0 0 Median 1.5113 1.2745 NaN 1 0 Median 1.0717 1.0043 NaN 1 0 Median 1.3549 1.1228 NaN 1 0 Median 1.3541 1.3909 NaN 1 0 Median NaN NaN NaN 0 0 Median 20012000 8935500 11076000 0 0 0 3418200 1379300 2038900 11199000 5459600 5739400 4341900 1574500 2767400 1052800 522110 530700 0 0 0 38339 2178 40274 203390;203391;203392;203393 206775;206776;206777 206775 3 WAETVRPEEVSQEHIETAYR ______________________________ RPEEVSQEHIETAYRIWLEPCIRGVCRRNC R W A Y R I 2 2 0 0 0 1 5 0 1 1 0 0 0 0 1 1 2 1 1 2 0 0 20 1 2429.1612 Q86UV5 Q86UV5 14 33 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes yes 3;4 2.9815E-19 146.78 By MS/MS By MS/MS 2 2 0.95597 1.0431 6.1867 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85011 1.0339 5.8855 2 0 Median 1.0932 1.0703 8.2612 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49683000 27754000 21929000 0 0 0 0 0 0 43698000 24893000 18805000 5984900 2861300 3123600 0 0 0 0 0 0 38340 3281 40275 203394;203395;203396;203397 206778;206779;206780;206781;206782 206780 5 WAEYHADIYDK GAPAAESKEIVRGYKWAEYHADIYDKVSGD RGYKWAEYHADIYDKVSGDMQKQGCDCECL K W A D K V 2 0 0 2 0 0 1 0 1 1 0 1 0 0 0 0 0 1 2 0 0 0 11 0 1409.6252 Q9NRX4 Q9NRX4 49 59 PHPT1 14 kDa phosphohistidine phosphatase yes yes 2;3 2.542E-05 123.79 By matching By MS/MS By matching 1 2 1 1.8226 1.5102 23.142 4 Linear 0.92584 0.85644 NaN 1 0 Median 1.6967 1.3955 4.1706 2 1 Median 1.2141 1.1837 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40493000 15421000 25072000 2415300 1167900 1247400 34343000 12420000 21924000 3734600 1833300 1901300 0 0 0 0 0 0 0 0 0 38341 4092 40276 203398;203399;203400;203401 206783;206784;206785 206785 3 WAIAQLNYADMLK EIVNRASLACGPMVKWAIAQLNYADMLKRV VKWAIAQLNYADMLKRVEPLRNELQKLEDD K W A L K R 3 0 1 1 0 1 0 0 0 1 2 1 1 0 0 0 0 1 1 0 0 0 13 0 1535.7806 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3395 3407 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 6.7811E-07 104.52 By MS/MS By matching By matching 1 1 2 1.0637 1.0597 12.401 4 Median 0.98521 0.98708 NaN 1 0 Median 1.0976 0.96694 NaN 1 0 Median 1.082 1.196 7.0796 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22310000 10592000 11718000 11903000 5788900 6114200 9127800 4204700 4923100 1279300 598190 681120 0 0 0 0 0 0 0 0 0 38342 2865 40277 203402;203403;203404;203405 206786 206786 1 WAIAQLNYADMLKR EIVNRASLACGPMVKWAIAQLNYADMLKRV KWAIAQLNYADMLKRVEPLRNELQKLEDDA K W A K R V 3 1 1 1 0 1 0 0 0 1 2 1 1 0 0 0 0 1 1 0 0 0 14 1 1691.8817 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3395 3408 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2;3 3.9483E-05 79.633 By MS/MS By matching 2 1 1.1004 1.1416 21.476 3 Median 0.95738 0.98913 20.275 2 0 Median NaN NaN NaN 0 0 Median 1.1304 1.3048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15856000 7842000 8013600 14675000 7110200 7564400 0 0 0 1181000 731840 449200 0 0 0 0 0 0 0 0 0 38343 2865 40278 203406;203407;203408 206787;206788;206789 206787 3 WAIELSGPGGGSR TAQGGLVANRGRRFKWAIELSGPGGGSRGR FKWAIELSGPGGGSRGRSDRGSGQGDSLYP K W A S R G 1 1 0 0 0 0 1 4 0 1 1 0 0 0 1 2 0 1 0 0 0 0 13 0 1285.6415 S4R329;H0YK61;H0YNK0;H0YNK8;Q5J8M3;H0YMH5 S4R329 17 29 EMC4 ER membrane protein complex subunit 4 yes no 2 0.014456 33.866 By MS/MS By matching 1 1 1.2217 1.1324 20.594 2 Median NaN NaN NaN 0 0 Median 1.1755 0.97891 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2698 1.3099 NaN 1 0 Median 1357100 625560 731580 0 0 0 940510 438090 502410 0 0 0 0 0 0 0 0 0 416630 187460 229170 38344 1188 40279 203409;203410 206790;206791 206791 2 WALSQSNPSALR AEVMNSLAVTMDDFRWALSQSNPSALRETV DFRWALSQSNPSALRETVVEVPQVTWEDIG R W A L R E 2 1 1 0 0 1 0 0 0 0 2 0 0 0 1 3 0 1 0 0 0 0 12 0 1328.6837 P55072 P55072 454 465 VCP Transitional endoplasmic reticulum ATPase yes yes 2 4.6406E-15 190.02 By MS/MS By MS/MS By MS/MS 3 2 1 1.022 0.95675 3.29 6 Median 0.99616 0.95719 3.5467 3 0 Median 1.0758 0.93154 3.7123 2 0 Median 0.90282 0.95784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154360000 73848000 80516000 77453000 37041000 40413000 63912000 29868000 34044000 12998000 6938600 6058900 0 0 0 0 0 0 0 0 0 38345 2494 40280 203411;203412;203413;203414;203415;203416 206792;206793;206794;206795;206796;206797;206798;206799;206800;206801;206802;206803;206804;206805 206793 14 WANFHLENSGWQK LEELMKLSPEELLLRWANFHLENSGWQKIN LRWANFHLENSGWQKINNFSADIKDSKAYF R W A Q K I 1 0 2 0 0 1 1 1 1 0 1 1 0 1 0 1 0 2 0 0 0 0 13 0 1615.7532 P13797;A0A0A0MSQ0 P13797 276 288 PLS3 Plastin-3 yes no 2;3 2.4217E-10 177.78 By MS/MS By matching By MS/MS By matching 5 4 2 1 1.1468 1.0521 19.814 12 Median 0.95546 0.90565 13.948 5 0 Median 1.1702 1.0263 15.235 4 0 Median 1.3515 1.3981 15.174 2 0 Median 1.3755 1.1823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 130140000 58259000 71877000 105540000 47362000 58178000 6337600 2737300 3600400 17591000 7872200 9719100 666870 287000 379870 0 0 0 0 0 0 38346 1995 40281 203417;203418;203419;203420;203421;203422;203423;203424;203425;203426;203427;203428 206806;206807;206808;206809;206810;206811;206812;206813 206810 8 WAQFFIHPLMIR QFDVQRKYFKEALDRWAQFFIHPLMIRDAI LDRWAQFFIHPLMIRDAIDREVEAVDSEYQ R W A I R D 1 1 0 0 0 1 0 0 1 2 1 0 1 2 1 0 0 1 0 0 0 0 12 0 1557.8279 O43847;G3V1R5;F5H7V1 O43847 290 301 NRD1 Nardilysin yes no 2 0.0021206 77.789 By MS/MS 1 0.92708 0.93297 NaN 1 Median 0.92708 0.93297 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1157300 448820 708460 1157300 448820 708460 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38347 1597 40282 203429 206814 206814 1 WARPPISMNFEVPFAPSGLK ISAEIELLPTNDKKKWARPPISMNFEVPFA ISMNFEVPFAPSGLKVRYLKVFEPKLNYSD K W A L K V 2 1 1 0 0 0 1 1 0 1 1 1 1 2 4 2 0 1 0 1 0 0 20 1 2243.1561 A0A087WY71;E9PFW3;Q96CW1 A0A087WY71 380 399 AP2M1 AP-2 complex subunit mu yes no 3 5.3301E-05 38.271 By MS/MS By matching By MS/MS By matching By matching 2 1 1 1 1 0.50306 0.51019 38.131 6 Median 0.43648 0.44536 8.0614 2 0 Median 0.45344 0.42925 NaN 1 0 Median 0.54587 0.55207 NaN 1 0 Median 0.83755 0.82031 NaN 1 0 Median 1.032 1.0645 NaN 1 0 Median NaN NaN NaN 0 0 Median 6040200 3966200 2074000 2558600 1689300 869310 447810 273210 174600 2707700 1842900 864830 74901 28522 46379 251240 132360 118890 0 0 0 38348 78 40283 203430;203431;203432;203433;203434;203435 206815;206816;206817;206818 206817 4 WATHGEPSPVNSHPQR LDIEFDVHLGIAHTRWATHGEPSPVNSHPQ ATHGEPSPVNSHPQRSDKNNEFIVIHNGII R W A Q R S 1 1 1 0 0 1 1 1 2 0 0 0 0 0 3 2 1 1 0 1 0 0 16 0 1798.8499 Q06210 Q06210 96 111 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 3 0.01869 30.172 By MS/MS 1 0.82878 0.71781 NaN 1 Median NaN NaN NaN 0 0 Median 0.82878 0.71781 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2267000 1185000 1082000 0 0 0 2267000 1185000 1082000 0 0 0 0 0 0 0 0 0 0 0 0 38349 2723 40284 203436 206819 206819 1 WCAHTNVELK CLLDNYVSLFEVLLKWCAHTNVELKKAALS EVLLKWCAHTNVELKKAALSALESFLKQVS K W C L K K 1 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 1 1 0 1 0 0 10 0 1256.5972 P78527 P78527 300 309 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00015815 115.71 By MS/MS 2 1.4474 1.2873 NaN 1 Median NaN NaN NaN 0 0 Median 1.4474 1.2873 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14861000 6204200 8656800 0 0 0 14861000 6204200 8656800 0 0 0 0 0 0 0 0 0 0 0 0 38350 2647 40285 203437;203438 206820;206821 206821 2 WDAENAIQQMGGQWLGGR TGKSKGYGFVSFFNKWDAENAIQQMGGQWL ENAIQQMGGQWLGGRQIRTNWATRKPPAPK K W D G R Q 2 1 1 1 0 3 1 4 0 1 1 0 1 0 0 0 0 2 0 0 0 0 18 0 2015.9272 C9JTN7;F8W8I6;P31483 C9JTN7 147 164 TIA1 Nucleolysin TIA-1 isoform p40 no no 2 0.0028214 32.062 By MS/MS 1 0.96337 1.0485 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96337 1.0485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2170300 1010200 1160100 0 0 0 0 0 0 2170300 1010200 1160100 0 0 0 0 0 0 0 0 0 38351 724;1086 40286 203439 206822 206822 1 WDETKGEDNIDFMPTILSR SRCSVLAAANSVFGRWDETKGEDNIDFMPT KGEDNIDFMPTILSRFDMIFIVKDEHNEER R W D S R F 0 1 1 3 0 0 2 1 0 2 1 1 1 1 1 1 2 1 0 0 0 0 19 1 2266.0576 P33992;B1AHB1 P33992 495 513 MCM5 DNA replication licensing factor MCM5;DNA helicase yes no 3 0.020161 17.595 By MS/MS 3 0.92194 0.93826 13.66 3 Plateau 0.92194 0.93826 13.66 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3501400 1935600 1565800 3501400 1935600 1565800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38352 2224 40287 203440;203441;203442 206823;206824 206823 2 WDETPASQMGGSTPVLTPGK IGETPTPGASKRKSRWDETPASQMGGSTPV ASQMGGSTPVLTPGKTPIGTPAMNMATPTP R W D G K T 1 0 0 1 0 1 1 3 0 0 1 1 1 0 3 2 3 1 0 1 0 0 20 0 2057.9728 O75533 O75533 338 357 SF3B1 Splicing factor 3B subunit 1 yes yes 2 8.409E-08 62.042 By MS/MS By matching 1 1 0.61075 0.58509 15.875 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48218 0.52296 NaN 1 0 Median 0.77361 0.65459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5073300 3428100 1645300 0 0 0 0 0 0 4541600 3155900 1385700 531700 272180 259530 0 0 0 0 0 0 38353 1683 40288 203443;203444 206825 206825 1 WDKDNLQILR KKYDEAIKCYRNALKWDKDNLQILRDLSLL RNALKWDKDNLQILRDLSLLQIQMRDLEGY K W D L R D 0 1 1 2 0 1 0 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 10 1 1299.6935 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 109 118 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 3 0.0012923 54.608 By matching By matching By MS/MS By matching 1 1 1 1 1.5211 1.6501 36.724 4 Linear 0.97601 1.0096 NaN 1 0 Median 1.4117 1.4141 NaN 1 0 Median 1.5148 1.7214 NaN 1 0 Median 0.78029 0.74987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5784200 2595900 3188300 1220800 518840 702010 1473900 603770 870100 2852200 1338700 1513500 237350 134580 102770 0 0 0 0 0 0 38354 213 40289 203445;203446;203447;203448 206826 206826 1 WDKNSLTLEAVKR GEDARLDQETAQWLRWDKNSLTLEAVKRLI LRWDKNSLTLEAVKRLIAEGNKEELRKCFG R W D K R L 1 1 1 1 0 0 1 0 0 0 2 2 0 0 0 1 1 1 0 1 0 0 13 2 1558.8467 Q96G03;E7ENQ8;E9PD70 Q96G03 25 37 PGM2 Phosphoglucomutase-2 yes no 3 0.0086953 60.628 By MS/MS 1 1.3843 1.4986 NaN 1 Median 1.3843 1.4986 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11148000 3757700 7390400 11148000 3757700 7390400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38355 3652 40290 203449 206827 206827 1 WDLSAQQIEER MADAASPCSVVNDLRWDLSAQQIEERTREL NDLRWDLSAQQIEERTRELIEQTKRVYDQV R W D E R T 1 1 0 1 0 2 2 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 11 0 1373.6575 P52888;K7EKB6 P52888 26 36 THOP1 Thimet oligopeptidase yes no 2 0.00015194 96.015 By MS/MS By matching 1 1 0.93758 0.85311 14.492 2 Median 0.98849 0.94517 NaN 1 0 Median 0.88929 0.77002 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10035000 4486500 5548100 5292400 2375300 2917100 4742200 2111200 2631000 0 0 0 0 0 0 0 0 0 0 0 0 38356 2460 40291 203450;203451 206828;206829 206829 2 WDQSTFLGR ______________________________ NIQEPRWDQSTFLGRARHFFTVTDPRNLLL R W D G R A 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 1 1 1 0 0 0 0 9 0 1108.5302 S4R3N9;A0A1P0AYU5;Q9BWM7 S4R3N9 15 23 SFXN3 Sideroflexin-3 yes no 2 0.0050265 73.665 By MS/MS 1 3.2133 3.0005 NaN 1 Median 3.2133 3.0005 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58557000 13349000 45208000 58557000 13349000 45208000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38357 329 40292 203452 206830 206830 1 WDYEKNEWKK MLDMKVNPIQGLASKWDYEKNEWKK_____ GLASKWDYEKNEWKK_______________ K W D K K - 0 0 1 1 0 0 2 0 0 0 0 3 0 0 0 0 0 2 1 0 0 0 10 2 1424.6725 P13073 P13073 160 169 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 3 0.033923 22.917 By MS/MS By matching 1 1 0.61958 0.67888 10.261 2 Median 0.67406 0.72997 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5695 0.63137 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10145000 5588900 4556000 8624000 4589700 4034300 0 0 0 1520900 999230 521640 0 0 0 0 0 0 0 0 0 38358 1988 40293 203453;203454 206831 206831 1 WDYLTQVEK DTVLILCRKKVENTRWDYLTQVEKECKEKE KVENTRWDYLTQVEKECKEKEKPSYDTETD R W D E K E 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 9 0 1180.5764 Q9HB71 Q9HB71 163 171 CACYBP Calcyclin-binding protein yes yes 2 0.0063019 54.982 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3384 1.2345 44.914 4 Median 1.4225 1.3271 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2248 1.1483 NaN 1 0 Median 1.2593 1.0374 NaN 1 0 Median 2.7257 2.7952 NaN 1 0 Median NaN NaN NaN 0 0 Median 33642000 13360000 20282000 10924000 4721300 6203100 0 0 0 19282000 7786800 11495000 456770 194650 262120 2979500 657270 2322200 0 0 0 38359 4016 40294 203455;203456;203457;203458 206832;206833;206834 206833 3 WEAFGLR KDGKDSETGLLIKEKWEAFGLRLNHAQQQM TGLLIKEKWEAFGLRLNHAQQQMKMTENTL K W E L R L 1 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 877.44464 Q9NU22;Q5T795 Q9NU22 793 799 MDN1 Midasin yes no 2 0.02505 54.765 By MS/MS By matching 1 1 1.3223 1.2984 1.9278 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1834 1.3162 NaN 1 0 Median 1.4776 1.2808 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2249400 1127800 1121600 0 0 0 0 0 0 2187400 1102700 1084700 61939 25097 36842 0 0 0 0 0 0 38360 4112 40295 203459;203460 206835;206836 206836 2 WEDAIPLALK SEIRFRWLRLCIQSKWEDAIPLALKMATEQ CIQSKWEDAIPLALKMATEQGRMKFTRPLF K W E L K M 2 0 0 1 0 0 1 0 0 1 2 1 0 0 1 0 0 1 0 0 0 0 10 0 1154.6336 P09960 P09960 548 557 LTA4H Leukotriene A-4 hydrolase yes yes 2 0.017946 37.812 By MS/MS By matching 1 1 1.3866 1.3461 45.599 2 Median 1.0426 0.97506 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.8442 1.8582 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20187000 9883900 10303000 18041000 9103100 8937700 0 0 0 2145800 780720 1365100 0 0 0 0 0 0 0 0 0 38361 1924 40296 203461;203462 206837 206837 1 WEEVQSYIR AATQLKVQLQEAERRWEEVQSYIRKRTAEH QEAERRWEEVQSYIRKRTAEHEAAQQDLQS R W E I R K 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 9 0 1208.5826 Q86UP2 Q86UP2 497 505 KTN1 Kinectin yes yes 2 0.062208 101.54 By MS/MS 1 1.1052 1.0763 NaN 1 Median 1.1052 1.0763 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3565200 2109100 1456100 3565200 2109100 1456100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38362 3280 40297 203463 206838 206838 0 WEFKHPQPFLR RDLPIKLNQWCNVVRWEFKHPQPFLRTREF NVVRWEFKHPQPFLRTREFLWQEGHSAFAT R W E L R T 0 1 0 0 0 1 1 0 1 0 1 1 0 2 2 0 0 1 0 0 0 0 11 1 1483.7725 P07814 P07814 1153 1163 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 0.0086844 32.523 By MS/MS By matching 1 1 1.131 1.1517 53.227 2 Median 0.78447 0.79045 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6307 1.678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9378700 4613700 4765100 6811800 3630800 3181000 0 0 0 2566900 982820 1584100 0 0 0 0 0 0 0 0 0 38363 1892 40298 203464;203465 206839;206840 206839 2 WELLQQVDTSTR KVRFLEQQNQVLQTKWELLQQVDTSTRTHN QTKWELLQQVDTSTRTHNLEPYFESFINNL K W E T R T 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 12 0 1474.7416 P04264;CON__P04264 P04264 212 223 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.2587E-64 207.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 6 8 10 4 2 0.018402 0.019465 128.58 38 Median 0.018323 0.017219 111.11 9 9 Median 0.02419 0.020459 76.149 5 5 Median 0.019337 0.021121 73.808 8 8 Median 0.0066496 0.0057952 191.3 10 10 Median 0.026668 0.026815 72.296 4 4 Median 0.089157 0.071305 212.6 2 2 Median 1348000000 1311300000 36695000 653430000 644080000 9341000 44068000 42997000 1071200 316380000 310700000 5684800 139430000 135190000 4244000 145970000 141900000 4068300 48686000 36400000 12286000 + 38364 1848 40299 203466;203467;203468;203469;203470;203471;203472;203473;203474;203475;203476;203477;203478;203479;203480;203481;203482;203483;203484;203485;203486;203487;203488;203489;203490;203491;203492;203493;203494;203495;203496;203497;203498;203499;203500;203501;203502;203503;203504 206841;206842;206843;206844;206845;206846;206847;206848;206849;206850;206851;206852;206853;206854;206855;206856;206857;206858;206859;206860;206861;206862;206863;206864;206865;206866;206867;206868;206869;206870;206871;206872;206873;206874;206875;206876;206877;206878;206879;206880;206881;206882;206883;206884;206885;206886;206887;206888;206889;206890;206891 206853 51 WELNSGDGAFYGPK AEKQLENSLNEFGEKWELNSGDGAFYGPKI KWELNSGDGAFYGPKIDIQIKDAIGRYHQC K W E P K I 1 0 1 1 0 0 1 3 0 0 1 1 0 1 1 1 0 1 1 0 0 0 14 0 1539.6994 P26639 P26639 530 543 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00017301 80.763 By matching By MS/MS By MS/MS 1 2 1 1.0524 1.0133 9.8709 4 Median NaN NaN NaN 0 0 Median 1.1455 1.0169 NaN 1 0 Median 1.0279 1.0654 7.6063 2 2 Median 1.02 0.88391 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19113000 8749200 10364000 0 0 0 1621400 716630 904780 13453000 6169600 7283000 4039100 1862900 2176200 0 0 0 0 0 0 38365 2147 40300 203505;203506;203507;203508 206892;206893;206894 206892 3 WEQFYVMPLPR DRVVQKRPKRIRLSRWEQFYVMPLPRITDQ RLSRWEQFYVMPLPRITDQYRPKWRIPKLS R W E P R I 0 1 0 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 1 1 0 0 11 0 1464.7224 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42 A0A0A0MRA3 25727 25737 TTN Titin yes no 2 0.038681 28.399 By MS/MS By matching By matching 1 1 1 15.519 16.508 219.72 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15.519 16.508 NaN 1 0 Median 0.28822 0.27131 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66816 0.54831 NaN 1 0 Median 7134200 573740 6560400 0 0 0 0 0 0 6914200 406040 6508100 88724 66607 22118 0 0 0 131240 101100 30143 38366 155 40301 203509;203510;203511 206895 206895 1 WEQGQADYMGADSFDNIKR AMAQPFVSSEERKERWEQGQADYMGADSFD QADYMGADSFDNIKRKLDTYLQ________ R W E K R K 2 1 1 3 0 2 1 2 0 1 0 1 1 1 0 1 0 1 1 0 0 0 19 1 2229.9749 P46976 P46976 325 343 GYG1 Glycogenin-1 yes yes 3 4.5994E-10 88.264 By MS/MS 2 1.3355 1.374 26.991 2 Median 1.3355 1.374 26.991 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16158000 6620900 9536800 16158000 6620900 9536800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38367 2351 40302 203512;203513 206896 206896 1 WESGSLLER VSWSDTRRTLRKDHRWESGSLLEREEKEKL LRKDHRWESGSLLEREEKEKLFNEHIEALT R W E E R E 0 1 0 0 0 0 2 1 0 0 2 0 0 0 0 2 0 1 0 0 0 0 9 0 1075.5298 O14776;G3V220 O14776 931 939 TCERG1 Transcription elongation regulator 1 yes no 2 0.0018623 99.139 By MS/MS By MS/MS 2 2 1.1557 0.98265 33.963 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87323 0.96047 NaN 1 1 Median 1.5432 1.3109 40.765 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9839000 4931100 4907900 0 0 0 0 0 0 6002900 3293200 2709700 3836200 1637900 2198200 0 0 0 0 0 0 38368 1494 40303 203514;203515;203516;203517 206897;206898;206899;206900 206900 4 WETPYMHALAAAASSK ADTHLRILGKPVMERWETPYMHALAAAASS ETPYMHALAAAASSKGGRVLEVGFGMAIAA R W E S K G 5 0 0 0 0 0 1 0 1 0 1 1 1 0 1 2 1 1 1 0 0 0 16 0 1732.8243 Q14353 Q14353 45 60 GAMT Guanidinoacetate N-methyltransferase yes yes 2 0.00079928 42.095 By MS/MS 1 0.65826 0.61116 NaN 1 Median 0.65826 0.61116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5233800 2951100 2282700 5233800 2951100 2282700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38369 2876 40304 203518 206901 206901 1 WFEENASQSTVK IKVLQSALAAIRHARWFEENASQSTVKVLI HARWFEENASQSTVKVLIRLLKDLRIRFPG R W F V K V 1 0 1 0 0 1 2 0 0 0 0 1 0 1 0 2 1 1 0 1 0 0 12 0 1424.6572 B4DY09;Q12905 B4DY09 172 183 ILF2 Interleukin enhancer-binding factor 2 yes no 2 6.2694E-06 142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 3 2 3 3 1.1444 1.048 11.432 13 Median 1.1923 1.099 NaN 1 0 Median 1.2514 1.0663 NaN 1 0 Median 0.97005 0.99799 13.492 3 0 Median 1.3933 1.2209 11.589 2 1 Median 1.028 1.048 7.8812 3 0 Median 1.1444 0.93958 5.9503 3 0 Median 407810000 194140000 213670000 26192000 12353000 13838000 14642000 6322700 8318900 242200000 117920000 124280000 29027000 11953000 17075000 72391000 35112000 37279000 23358000 10479000 12879000 38370 609 40305 203519;203520;203521;203522;203523;203524;203525;203526;203527;203528;203529;203530;203531 206902;206903;206904;206905;206906;206907;206908;206909;206910;206911;206912;206913;206914;206915;206916;206917;206918;206919;206920;206921;206922;206923;206924;206925 206905 24 WFGFLEAQQAFQSVGTK QEQLKQKKAPVHVKRWFGFLEAQQAFQSVG GFLEAQQAFQSVGTKWDVSTTKARVAPEKK R W F T K W 2 0 0 0 0 3 1 2 0 0 1 1 0 3 0 1 1 1 0 1 0 0 17 0 1942.9577 P07814;V9GYZ6;V9GZ76 P07814 150 166 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes no 2 0.0051389 30.205 By MS/MS 1 1.1592 1.1133 NaN 1 Median 1.1592 1.1133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5561500 2573700 2987700 5561500 2573700 2987700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38371 1892 40306 203532 206926 206926 1 WFHPNITGVEAENLLLTR ______________________________ PNITGVEAENLLLTRGVDGSFLARPSKSNP R W F T R G 1 1 2 0 0 0 2 1 1 1 3 0 0 1 1 0 2 1 0 1 0 0 18 0 2109.1007 Q06124;A0A1W2PPU4 Q06124 6 23 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 yes no 3 2.1868E-05 48.477 By MS/MS By matching By matching 1 1 1 0.90521 0.87124 20.346 3 Plateau 0.90521 0.89003 NaN 1 0 Median 0.96677 0.83894 NaN 1 0 Median 0.58648 0.60974 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8404700 4089800 4314900 3824900 1562600 2262200 3606300 1877300 1729100 973410 649820 323600 0 0 0 0 0 0 0 0 0 38372 2721 40307 203533;203534;203535 206927 206927 1 WFIQQEMDLLR FILRLAYCQSEELRRWFIQQEMDLLRFRFS ELRRWFIQQEMDLLRFRFSILPKDKIQDFL R W F L R F 0 1 0 1 0 2 1 0 0 1 2 0 1 1 0 0 0 1 0 0 0 0 11 0 1477.7388 P49643 P49643 119 129 PRIM2 DNA primase large subunit yes yes 2 0.040854 27.621 By MS/MS 2 1.2503 1.0943 0.12595 2 Median NaN NaN NaN 0 0 Median 1.2503 1.0943 0.12595 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1966600 878750 1087800 0 0 0 1966600 878750 1087800 0 0 0 0 0 0 0 0 0 0 0 0 38373 2389 40308 203536;203537 206928 206928 1 WFNGQPIHAELSPVTDFR REEDAEKAVIDLNNRWFNGQPIHAELSPVT GQPIHAELSPVTDFREACCRQYEMGECTRG R W F F R E 1 1 1 1 0 1 1 1 1 1 1 0 0 2 2 1 1 1 0 1 0 0 18 0 2113.0381 P0DN76;Q01081 P0DN76 134 151 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2;3 1.3718E-06 64.275 By MS/MS By MS/MS By MS/MS By matching 2 2 2 2 0.69286 0.68511 20.768 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54755 0.53003 42.416 2 0 Median 0.85181 0.7127 6.2607 2 0 Median 0.64496 0.68871 0.063829 2 0 Median 0.70799 0.58864 5.6984 2 0 Median 43845000 24875000 18971000 0 0 0 0 0 0 35227000 19976000 15251000 4177700 2167500 2010200 3708700 2318300 1390400 731960 412960 319000 38374 1930 40309 203538;203539;203540;203541;203542;203543;203544;203545 206929;206930;206931;206932;206933;206934;206935;206936 206930 8 WFNKGIEMHQR LHMSLLYSLYCFEYRWFNKGIEMHQRLSNI FEYRWFNKGIEMHQRLSNIERNWPYYFGFG R W F Q R L 0 1 1 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 11 1 1444.7034 O14681;B7ZB74 O14681 221 231 EI24 Etoposide-induced protein 2.4 homolog yes no 3 0.058615 15.539 By MS/MS 1 0.84217 1.0095 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84217 1.0095 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11673000 5718400 5954800 0 0 0 0 0 0 11673000 5718400 5954800 0 0 0 0 0 0 0 0 0 38375 1489 40310 203546 206937 206937 1 WFTLSSGQGQVLLR PLSELLVADQLCLDRWFTLSSGQGQVLLRA RWFTLSSGQGQVLLRAQLGILVSQHSGVEA R W F L R A 0 1 0 0 0 2 0 2 0 0 3 0 0 1 0 2 1 1 0 1 0 0 14 0 1590.8518 Q9BSJ8 Q9BSJ8 894 907 ESYT1 Extended synaptotagmin-1 yes yes 2 0.019787 27.481 By MS/MS By matching By matching 2 1 1 0.91848 0.96368 29.947 4 Median 0.78725 0.76631 43.818 2 0 Median 1.274 1.0743 NaN 1 0 Median 0.80935 0.889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8234000 3950800 4283200 2357600 1245800 1111800 5360700 2433300 2927400 515650 271640 244010 0 0 0 0 0 0 0 0 0 38376 3816 40311 203547;203548;203549;203550 206938 206938 1 WFTSQVIR QKEGLMLDSHEELYKWFTSQVIRNLHVVFT SHEELYKWFTSQVIRNLHVVFTMNPSSEGL K W F I R N 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 8 0 1035.5502 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 3053 3060 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0048474 86.472 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 2 1.2324 1.1141 11.569 7 Median 1.3744 1.3334 NaN 1 1 Median 1.3428 1.1297 12.172 2 0 Median 1.0601 1.1425 3.5623 2 0 Median 1.0685 1.004 9.4633 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83330000 36771000 46559000 30071000 12834000 17236000 14367000 5912900 8454300 35086000 16277000 18808000 3806500 1746400 2060200 0 0 0 0 0 0 38377 2865 40312 203551;203552;203553;203554;203555;203556;203557 206939;206940;206941;206942;206943;206944;206945;206946 206939 8 WGDAGAEYVVESTGVFTTMEK NPITIFQERDPSKIKWGDAGAEYVVESTGV EYVVESTGVFTTMEKAGAHLQGGAKRVIIS K W G E K A 2 0 0 1 0 0 3 3 0 0 0 1 1 1 0 1 3 1 1 3 0 0 21 0 2276.0307 P04406;E7EUT5 P04406 87 107 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes no 2 1.727E-06 48.14 By matching By MS/MS By matching 1 2 1 1.1511 1.0437 35.306 4 Median 1.2669 1.2445 NaN 1 0 Median 0.88255 0.75138 42.031 2 0 Median 1.126 1.0769 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5786400 2568400 3218000 571510 241050 330460 1796200 769210 1027000 3418700 1558100 1860600 0 0 0 0 0 0 0 0 0 38378 1850 40313 203558;203559;203560;203561 206947 206947 1 WGDEHIPGSPYR SYLLKDKGEYTLVVKWGDEHIPGSPYRVVV VVKWGDEHIPGSPYRVVVP___________ K W G Y R V 0 1 0 1 0 0 1 2 1 1 0 0 0 0 2 1 0 1 1 0 0 0 12 0 1412.6473 P21333;Q60FE5;A0A087WWY3 P21333 2632 2643 FLNA Filamin-A no no 2;3 0.00019895 101.38 By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 5 1 2 1 0.8742 0.80449 19.475 14 Median 0.90925 0.8534 12.824 5 2 Median 0.78245 0.66711 22.169 5 0 Median 0.65162 0.71021 NaN 1 0 Median 0.8742 0.76674 0.13078 2 0 Median 0.57667 0.58741 NaN 1 0 Median NaN NaN NaN 0 0 Median 306450000 164700000 141750000 133450000 71250000 62203000 153910000 82589000 71324000 15460000 8922000 6537600 3119500 1657200 1462300 505020 283740 221270 0 0 0 38379 2088;3120 40314 203562;203563;203564;203565;203566;203567;203568;203569;203570;203571;203572;203573;203574;203575 206948;206949;206950;206951;206952;206953;206954;206955;206956;206957;206958;206959;206960;206961;206962;206963;206964;206965 206950 18 WGDESVPGSPFK TYTVKEKGDYILIVKWGDESVPGSPFKVKV IVKWGDESVPGSPFKVKVP___________ K W G F K V 0 0 0 1 0 0 1 2 0 0 0 1 0 1 2 2 0 1 0 1 0 0 12 0 1304.6037 Q14315 Q14315 2710 2721 FLNC Filamin-C yes yes 2 0.0012045 55.806 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.0653 1.0064 29.946 4 Median 1.2718 1.2743 NaN 1 0 Median 0.78861 0.69182 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.89235 0.82642 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.39 1.2257 NaN 1 0 Median 20235000 9243600 10991000 12071000 4919400 7151700 7380800 3962800 3418000 0 0 0 538410 265650 272770 0 0 0 244270 95689 148580 38380 2871 40315 203576;203577;203578;203579 206966;206967 206966 2 WGDIEFPPPFGR AAKVDATADYICKVKWGDIEFPPPFGREAY KVKWGDIEFPPPFGREAYPEEAYIADLDAK K W G G R E 0 1 0 1 0 0 1 2 0 1 0 0 0 2 3 0 0 1 0 0 0 0 12 0 1416.6826 P53396 P53396 233 244 ACLY ATP-citrate synthase yes yes 2 0.010147 37.191 By MS/MS 1 0.70475 0.7118 NaN 1 Median 0.70475 0.7118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1016200 549990 466200 1016200 549990 466200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38381 2467 40316 203580 206968;206969 206968 2 WGDRDSEGTWR ERRLGDSSLSRKDSRWGDRDSEGTWRKGPE KDSRWGDRDSEGTWRKGPEADSEWRRGPPE R W G W R K 0 2 0 2 0 0 1 2 0 0 0 0 0 0 0 1 1 2 0 0 0 0 11 1 1363.5905 Q14152 Q14152 890 900 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2;3 5.582E-05 79.036 By MS/MS By matching 2 1 1.2162 1.3006 16.097 3 Median 1.1749 1.2564 4.8929 2 0 Median 1.6336 1.6496 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14258000 6986400 7271100 13364000 6619900 6744000 893650 366560 527080 0 0 0 0 0 0 0 0 0 0 0 0 38382 2860 40317 203581;203582;203583 206970;206971;206972 206971 3 WGDYDSHDIER DSTTTQKYWIDIQLRWGDYDSHDIERYARA IQLRWGDYDSHDIERYARAKFLDYTTDNMS R W G E R Y 0 1 0 3 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 11 0 1391.5742 Q6P2Q9 Q6P2Q9 1668 1678 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 4.248E-05 82.171 By MS/MS By MS/MS By matching 3 2 2 1.1112 1.0327 13.889 7 Median NaN NaN NaN 0 0 Median 1.1112 0.93634 7.1128 3 0 Median 0.90684 0.98838 6.2024 2 0 Median 1.4482 1.2717 5.3422 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44266000 22892000 21375000 0 0 0 8140200 4547200 3593100 33326000 17082000 16243000 2800700 1262000 1538700 0 0 0 0 0 0 38383 3157 40318 203584;203585;203586;203587;203588;203589;203590 206973;206974;206975 206975 3 WGEEEAELNK DILRAPVDITGQFEKWGEEEAELNKNFYDK GQFEKWGEEEAELNKNFYDKKTAIHKALCD K W G N K N 1 0 1 0 0 0 4 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1203.5408 P49589;B4DKY1 P49589 483 492 CARS Cysteine--tRNA ligase, cytoplasmic yes no 2 0.016856 54.608 By MS/MS By MS/MS 1 1 0.9862 0.86528 19.716 2 Median NaN NaN NaN 0 0 Median 1.1204 0.99473 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86806 0.75268 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4480800 2263700 2217100 0 0 0 1609700 815240 794410 0 0 0 2871200 1448500 1422700 0 0 0 0 0 0 38384 2386 40319 203591;203592 206976;206977 206977 2 WGEEHIPGSPFHVTVP TYVVKERGDYVLAVKWGEEHIPGSPFHVTV GEEHIPGSPFHVTVP_______________ K W G V P - 0 0 0 0 0 0 2 2 2 1 0 0 0 1 3 1 1 1 0 2 0 0 16 0 1787.8631 O75369;E7EN95 O75369 2587 2602 FLNB Filamin-B yes no 2;3 0.053525 33.409 By MS/MS 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14460000 0 0 14460000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38385 1664 40320 203593;203594 206978;206979 206978 2 WGGDGLLYSASQDR ERILTGHTQSVTCLRWGGDGLLYSASQDRT RWGGDGLLYSASQDRTIKVWRAHDGVLCRT R W G D R T 1 1 0 2 0 1 0 3 0 0 2 0 0 0 0 2 0 1 1 0 0 0 14 0 1523.7005 Q9NVX2;A0A0A0MRH0;K7EN33 Q9NVX2 254 267 NLE1 Notchless protein homolog 1 yes no 2 0.002275 58.676 By MS/MS 1 1.1226 1.1149 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1226 1.1149 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7554000 2900700 4653200 0 0 0 0 0 0 7554000 2900700 4653200 0 0 0 0 0 0 0 0 0 38386 4142 40321 203595 206980 206980 1 WGIQQNSGFGK LLQQSGAQQFRMRVRWGIQQNSGFGKTSLN MRVRWGIQQNSGFGKTSLNRRGRVMPGKRR R W G G K T 0 0 1 0 0 2 0 3 0 1 0 1 0 1 0 1 0 1 0 0 0 0 11 0 1220.5938 Q96QD9;H9KVC6;H9KVC1 Q96QD9 72 82 FYTTD1 UAP56-interacting factor yes no 2 0.03568 29.473 By MS/MS 1 0.62575 0.62059 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62575 0.62059 NaN 1 0 Median NaN NaN NaN 0 0 Median 3329400 2157000 1172400 0 0 0 0 0 0 0 0 0 0 0 0 3329400 2157000 1172400 0 0 0 38387 3720 40322 203596 206981 206981 1 WGRDDIENIAR WNKRDFNQFIKANEKWGRDDIENIAREVEG ANEKWGRDDIENIAREVEGKTPEEVIEYSA K W G A R E 1 2 1 2 0 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 0 0 11 1 1343.6582 O60264 O60264 860 870 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 3.6623E-05 130.56 By MS/MS By MS/MS By matching 1 2 1 1.0202 1.1728 11.418 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0174 1.2374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99998 1.0747 4.7722 2 0 Median 1.4878 1.3449 NaN 1 0 Median 22143000 10680000 11462000 0 0 0 0 0 0 14250000 6893100 7356600 0 0 0 7556600 3638700 3917900 336130 148220 187910 38388 1608 40323 203597;203598;203599;203600 206982;206983;206984 206983 3 WGSNELPAEEGK STGLSLEQVKKLKERWGSNELPAEEGKTLL KERWGSNELPAEEGKTLLELVIEQFEDLLV R W G G K T 1 0 1 0 0 0 3 2 0 0 1 1 0 0 1 1 0 1 0 0 0 0 12 0 1315.6044 P16615 P16615 36 47 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 yes yes 2 0.0010921 57.174 By MS/MS 4 1.0571 0.94511 9.8182 4 Median NaN NaN NaN 0 0 Median 1.0571 0.94511 9.8182 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17103000 7334700 9768400 0 0 0 17103000 7334700 9768400 0 0 0 0 0 0 0 0 0 0 0 0 38389 2031 40324 203601;203602;203603;203604 206985 206985 1 WGTDEAQFIYILGNR VQQDVQDLYEAGELKWGTDEAQFIYILGNR WGTDEAQFIYILGNRSKQHLRLVFDEYLKT K W G N R S 1 1 1 1 0 1 1 2 0 2 1 0 0 1 0 0 1 1 1 0 0 0 15 0 1781.8737 P08133 P08133 192 206 ANXA6 Annexin A6 yes yes 2 2.3997E-05 85.256 By MS/MS By MS/MS 1 1 1.2246 1.1221 14.905 2 Median 1.0439 1.0099 NaN 1 0 Median 1.4366 1.2468 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8984700 3743400 5241300 5828600 2498500 3330100 3156100 1244900 1911200 0 0 0 0 0 0 0 0 0 0 0 0 38390 1898 40325 203605;203606 206986;206987;206988 206986 3 WGTDEEK VEQDAQALFQAGELKWGTDEEKFITIFGTR LFQAGELKWGTDEEKFITIFGTRSVSHLRK K W G E K F 0 0 0 1 0 0 2 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 7 0 863.36611 P08758;D6RBL5;D6RBE9 P08758 187 193 ANXA5 Annexin A5;Annexin yes no 2 0.043995 43.124 By MS/MS 1 1.1699 0.99142 NaN 1 Median NaN NaN NaN 0 0 Median 1.1699 0.99142 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1221800 571110 650680 0 0 0 1221800 571110 650680 0 0 0 0 0 0 0 0 0 0 0 0 38391 1909 40326 203607 206989 206989 1 WGTDEEKFITIFGTR VEQDAQALFQAGELKWGTDEEKFITIFGTR WGTDEEKFITIFGTRSVSHLRKVFDKYMTI K W G T R S 0 1 0 1 0 0 2 2 0 2 0 1 0 2 0 0 3 1 0 0 0 0 15 1 1798.889 P08758;D6RBL5;D6RBE9 P08758 187 201 ANXA5 Annexin A5;Annexin yes no 3 0.069922 10.467 By MS/MS By matching By matching 1 1 1 1.2652 1.192 12.672 3 Median 1.1799 1.1694 NaN 1 0 Median 1.2652 1.192 NaN 1 0 Median 1.3293 1.4695 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3189700 1438800 1750900 2047500 911880 1135600 245700 103750 141950 896530 423190 473330 0 0 0 0 0 0 0 0 0 38392 1909 40327 203608;203609;203610 206990 206990 1 WGTLTDCVVMR SFETTDDSLREHFEKWGTLTDCVVMRDPQT HFEKWGTLTDCVVMRDPQTKRSRGFGFVTY K W G M R D 0 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 2 1 0 2 0 0 11 0 1336.6268 P51991 P51991 58 68 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 0.00018924 76.465 By matching By matching By MS/MS 2 1 1 1.1043 1.0229 23.951 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83072 0.89318 38.81 2 0 Median 1.1555 0.98363 NaN 1 0 Median 1.0554 1.0638 NaN 1 0 Median NaN NaN NaN 0 0 Median 6588800 3125300 3463400 0 0 0 0 0 0 3925800 1802100 2123700 84028 45144 38883 2578900 1278100 1300800 0 0 0 38393 2446 40328 203611;203612;203613;203614 206991;206992 206991 2 WGVPIEK LNYLDPRITVAWCKKWGVPIEKIYNKTQRE ITVAWCKKWGVPIEKIYNKTQREKFAWAID K W G E K I 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 1 0 1 0 0 7 0 827.45414 P11387 P11387 736 742 TOP1 DNA topoisomerase 1 yes yes 2 0.032506 48.756 By MS/MS By matching 1 2 1.1982 1.069 7.5259 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98462 1.069 NaN 1 0 Median 1.2944 1.1167 10.029 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19292000 9337400 9954900 0 0 0 0 0 0 17339000 8444700 8894400 1953200 892710 1060500 0 0 0 0 0 0 38394 1962 40329 203615;203616;203617 206993;206994 206993 2 WHEEVEIYR VKQKVQPYLDEFQKKWHEEVEIYRQKVAPL DEFQKKWHEEVEIYRQKVAPLGEEFREGAR K W H Y R Q 0 1 0 0 0 0 3 0 1 1 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1259.5935 CON__P15497 CON__P15497 131 139 yes yes 2;3 0.00077691 80.684 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 0.17956 0.17945 44.076 4 Median 0.20914 0.19748 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.2509 0.23533 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.15416 0.16307 NaN 1 1 Median 0.10622 0.085731 NaN 1 1 Median 14589000 13127000 1462100 5570900 4759600 811260 0 0 0 1603200 1424900 178310 0 0 0 2170100 2047700 122490 5245200 4895100 350070 + 38395 758 40330 203618;203619;203620;203621;203622;203623 206995;206996;206997;206998;206999;207000 206995 6 WHFYDTVK GINAALGNMEEDNWRWHFYDTVKGSDWLGD MEEDNWRWHFYDTVKGSDWLGDQDAIHYMT R W H V K G 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 1 1 1 0 0 8 0 1094.5185 P31040;D6RFM5;A0A494C1T6 P31040 121 128 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes no 2 0.055593 33.55 By matching By MS/MS 1 1 1.3517 1.2068 16.618 2 Median 1.1466 1.073 NaN 1 0 Median 1.5936 1.3573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20950000 9423900 11526000 16532000 7741900 8789800 4418500 1682000 2736500 0 0 0 0 0 0 0 0 0 0 0 0 38396 2200 40331 203624;203625 207001 207001 1 WIDDVRTER VYDITNVNSFQQTTKWIDDVRTERGSDVII FQQTTKWIDDVRTERGSDVIIMLVGNKTDL K W I E R G 0 2 0 2 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 9 1 1188.5887 P20340;Q9NRW1;J3KR73;C9JU14;Q9H0N0 P20340 107 115 RAB6A;RAB6B;RAB6C Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-6C no no 3 0.0021541 66.435 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1989200 0 1989200 1041900 0 1041900 947370 0 947370 0 0 0 0 0 0 0 0 0 0 0 0 38397 2079;4089 40332 203626;203627 207002;207003 207003 2 WIDETPPVDQPSR EAIEKLVALLNTLDRWIDETPPVDQPSRFG DRWIDETPPVDQPSRFGNKAYRTWYAKLDE R W I S R F 0 1 0 2 0 1 1 0 0 1 0 0 0 0 3 1 1 1 0 1 0 0 13 0 1538.7365 A6PVN5;Q15257;F6WIT2;Q5T949;Q5T948;A6PVN9;A6PVN6;A6PVN7;A6PVN8;C9IZ76 A6PVN5 93 105 PPP2R4 Serine/threonine-protein phosphatase 2A activator yes no 2 0.00021576 94.297 By MS/MS By matching 1 1 0.8885 0.82972 35.795 2 Median 0.64852 0.64418 NaN 1 0 Median 1.2173 1.0687 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5085300 2341000 2744300 4448800 2060300 2388500 636550 280690 355860 0 0 0 0 0 0 0 0 0 0 0 0 38398 533 40333 203628;203629 207004 207004 0 WIDFDNDYK RYSAEWKSTVSRLGRWIDFDNDYKTLYPQF VSRLGRWIDFDNDYKTLYPQFMESVWWVFK R W I Y K T 0 0 1 3 0 0 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 9 0 1214.5244 P41252;A0A0A0MSX9;J3KR24;Q5TCD1 P41252 141 149 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.019275 40.002 By MS/MS By matching By matching 1 1 1 1.1652 1.1364 9.6596 3 Plateau 1.1652 1.1364 NaN 1 0 Median 1.2799 1.0948 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0795 0.94653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6420100 3071800 3348300 5113200 2516100 2597100 1177600 507950 669620 0 0 0 129380 47782 81600 0 0 0 0 0 0 38399 2302 40334 203630;203631;203632 207005 207005 1 WIDNPTVDDR KAAVHLEGKIEQAQRWIDNPTVDDRGVGQA EQAQRWIDNPTVDDRGVGQAAIRGLVAEGH R W I D R G 0 1 1 3 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 10 0 1229.5677 P18206 P18206 503 512 VCL Vinculin yes yes 2 0.00037209 103.55 By MS/MS By MS/MS 1 2 0.89797 0.79111 17.519 3 Median 0.82233 0.79111 NaN 1 0 Median 0.96383 0.88116 23.159 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41805000 22107000 19697000 25189000 13336000 11853000 16615000 8770800 7844600 0 0 0 0 0 0 0 0 0 0 0 0 38400 2057 40335 203633;203634;203635 207006;207007;207008;207009 207007 4 WIDNPTVDDRGVGQAAIR KAAVHLEGKIEQAQRWIDNPTVDDRGVGQA NPTVDDRGVGQAAIRGLVAEGHRLANVMMG R W I I R G 2 2 1 3 0 1 0 2 0 2 0 0 0 0 1 0 1 1 0 2 0 0 18 1 1981.997 P18206 P18206 503 520 VCL Vinculin yes yes 3 0.0001193 38.889 By MS/MS 1 1.1613 1.2902 NaN 1 Median 1.1613 1.2902 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7491900 3459900 4032000 7491900 3459900 4032000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38401 2057 40336 203636 207010 207010 1 WIEETTAQQEMMKPGQAEDSR EVLGDYRACHGTLIKWIEETTAQQEMMKPG AQQEMMKPGQAEDSRVLSEQLSQQTALFAE K W I S R V 2 1 0 1 0 3 4 1 0 1 0 1 2 0 1 1 2 1 0 0 0 0 21 1 2464.0999 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1285 1305 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 0.017769 16.93 By matching By MS/MS By matching 1 1 1 0.76984 0.80153 50.886 3 Median 0.76984 0.80153 NaN 1 0 Median 1.0787 1.0134 NaN 1 0 Median 0.33039 0.38229 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21661000 12275000 9385800 14020000 7523500 6496800 3679800 2072400 1607400 3960600 2679100 1281600 0 0 0 0 0 0 0 0 0 38402 1220 40337 203637;203638;203639 207011 207011 1 WIGLDLSNGKPR FHNEAQVNPERKNLKWIGLDLSNGKPRDNK NLKWIGLDLSNGKPRDNKQAGVFEPTIVKV K W I P R D 0 1 1 1 0 0 0 2 0 1 2 1 0 0 1 1 0 1 0 0 0 0 12 1 1354.7357 P17987;E7EQR6;F5H282 P17987 485 496 TCP1 T-complex protein 1 subunit alpha yes no 3 0.00020041 65.395 By MS/MS 1 1.1483 1.1527 NaN 1 Median 1.1483 1.1527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7714500 3128000 4586500 7714500 3128000 4586500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38403 2051 40338 203640 207012 207012 1 WIQSIMDMLQR GITNSQTLIPDCQKKWIQSIMDMLQRQGLR CQKKWIQSIMDMLQRQGLRPIPEAEIGLAV K W I Q R Q 0 1 0 1 0 2 0 0 0 2 1 0 2 0 0 1 0 1 0 0 0 0 11 0 1419.7003 O60934;A0A0C4DG07 O60934 289 299 NBN Nibrin yes no 2 0.004516 47.823 By MS/MS 1 0.88291 0.93759 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88291 0.93759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 798300 412290 386010 0 0 0 0 0 0 798300 412290 386010 0 0 0 0 0 0 0 0 0 38404 1641 40339 203641 207013;207014 207013 2 WISDWNLTTEK GAIQYIPTELDQVRKWISDWNLTTEKKHTL QVRKWISDWNLTTEKKHTLLRLLYEALVDC K W I E K K 0 0 1 1 0 0 1 0 0 1 1 1 0 0 0 1 2 2 0 0 0 0 11 0 1391.6721 Q7L2H7;J3KNJ2;E9PRY0;E9PN86 Q7L2H7 150 160 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 2 0.021919 52.79 By MS/MS By MS/MS 1 1 1.0232 0.91293 0.97088 2 Median 0.99438 0.91922 NaN 1 1 Median 1.0529 0.90668 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18479000 8333900 10145000 15443000 6833100 8609900 3036100 1500800 1535300 0 0 0 0 0 0 0 0 0 0 0 0 38405 3221 40340 203642;203643 207015;207016 207015 2 WISDWNLTTEKK GAIQYIPTELDQVRKWISDWNLTTEKKHTL VRKWISDWNLTTEKKHTLLRLLYEALVDCK K W I K K H 0 0 1 1 0 0 1 0 0 1 1 2 0 0 0 1 2 2 0 0 0 0 12 1 1519.7671 Q7L2H7;J3KNJ2;E9PRY0;E9PN86 Q7L2H7 150 161 EIF3M Eukaryotic translation initiation factor 3 subunit M yes no 3 0.050563 13.404 By MS/MS 1 1.3549 1.2647 NaN 1 Median 1.3549 1.2647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4732500 1950000 2782500 4732500 1950000 2782500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38406 3221 40341 203644 207017 207017 1 WISIMTER LYDAGVKRKGTDVPKWISIMTERSVPHLQK KGTDVPKWISIMTERSVPHLQKVFDRYKSY K W I E R S 0 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 8 0 1034.5219 P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YM50;H0YNP5;H0YN28;H0YL33 P07355 213 220 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein yes no 2 0.0035841 87.323 By MS/MS By matching By MS/MS By MS/MS By matching By matching 4 4 3 4 3 2 1.2218 1.4765 20.645 20 Linear 1.1947 1.1955 14.366 4 0 Median 1.2705 1.0817 14 4 0 Median 1.3569 1.3155 46.54 3 1 Plateau 1.2184 1.0071 12.059 4 0 Median 1.2169 1.2345 17.711 3 0 Median 1.0854 0.9251 2.7627 2 0 Median 344300000 153160000 191140000 146620000 67034000 79584000 45279000 19454000 25826000 67343000 29182000 38162000 64040000 27801000 36238000 17814000 8112700 9700800 3210100 1578200 1631900 38407 1885 40342;40343 203645;203646;203647;203648;203649;203650;203651;203652;203653;203654;203655;203656;203657;203658;203659;203660;203661;203662;203663;203664 207018;207019;207020;207021;207022;207023;207024;207025;207026;207027 207025 654 10 WISSGEYIQMSGR VLFTNARKFDGKDFRWISSGEYIQMSGRAG FRWISSGEYIQMSGRAGRRGMDDRGIVILM R W I G R A 0 1 0 0 0 1 1 2 0 2 0 0 1 0 0 3 0 1 1 0 0 0 13 0 1512.7031 P42285 P42285 511 523 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 3.7856E-05 90.913 By matching By MS/MS By matching 1 2 1 1.188 1.0373 28.046 4 Median NaN NaN NaN 0 0 Median 1.2753 1.0942 NaN 1 0 Median 0.84004 0.94575 47.09 2 0 Median 1.1762 0.98335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15004000 6833700 8170600 0 0 0 1944200 892280 1051900 12828000 5832400 6995500 232320 109050 123270 0 0 0 0 0 0 38408 2309 40344 203665;203666;203667;203668 207028;207029 207028 2 WITAKEDDLNSFNATDLK YDMTLTNACIALSQRWITAKEDDLNSFNAT AKEDDLNSFNATDLKDLSSHQLNEFLAQTL R W I L K D 2 0 2 3 0 0 1 0 0 1 2 2 0 1 0 1 2 1 0 0 0 0 18 1 2080.0113 P09960 P09960 476 493 LTA4H Leukotriene A-4 hydrolase yes yes 3 0.007276 24.41 By MS/MS 1 1.2425 1.1738 NaN 1 Median 1.2425 1.1738 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4763500 1568700 3194900 4763500 1568700 3194900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38409 1924 40345 203669 207030 207030 1 WITEEQPNSATNLR IQTSSLGLLTGYIRRWITEEQPNSATNLRF RWITEEQPNSATNLRFVLEWTWNKVVLTKE R W I L R F 1 1 2 0 0 1 2 0 0 1 1 0 0 0 1 1 2 1 0 0 0 0 14 0 1657.806 Q8WYP5 Q8WYP5 568 581 AHCTF1 Protein ELYS yes yes 2 5.2616E-07 132.25 By MS/MS By matching 1 1 0.72794 0.71525 1.4647 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64697 0.70788 NaN 1 0 Median 0.81905 0.7227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9655000 5771500 3883500 0 0 0 0 0 0 8852200 5392400 3459900 802770 379090 423680 0 0 0 0 0 0 38410 3524 40346 203670;203671 207031;207032 207031 2 WIYEDVER TVDELKDWIKFAQKRWIYEDVERQWKGHDL IKFAQKRWIYEDVERQWKGHDLNEDGLVSW R W I E R Q 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 8 0 1108.5189 O43852 O43852 104 111 CALU Calumenin yes yes 2 0.024929 63.48 By MS/MS 1 1.1066 0.96583 NaN 1 Median NaN NaN NaN 0 0 Median 1.1066 0.96583 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7377100 3441700 3935400 0 0 0 7377100 3441700 3935400 0 0 0 0 0 0 0 0 0 0 0 0 38411 1598 40347 203672 207033 207033 1 WKDAPSPVDAAFR VWKGHAWARQLISERWKDAPSPVDAAFRYD ERWKDAPSPVDAAFRYDRNSVLLIKGDKFW R W K F R Y 3 1 0 2 0 0 0 0 0 0 0 1 0 1 2 1 0 1 0 1 0 0 13 1 1458.7256 CON__Q3SZV7 CON__Q3SZV7 92 104 yes yes 3 0.000278 73.466 By MS/MS 1 0.17404 0.17507 NaN 1 Median 0.17404 0.17507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4263800 3690200 573620 4263800 3690200 573620 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 38412 780 40348 203673 207034 207034 1 WKDSDEADLVLAK IGATDSSGELMFLMKWKDSDEADLVLAKEA MKWKDSDEADLVLAKEANMKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 13 1 1488.746 Q13185 Q13185 142 154 CBX3 Chromobox protein homolog 3 yes yes 2;3 8.8266E-05 94.767 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 2 5 5 1.0278 0.97524 18.152 16 Median 1.3357 1.3586 18.876 2 1 Median 1.0738 0.97436 18.362 3 0 Median 0.96136 0.95682 2.8252 2 0 Median NaN NaN NaN 0 0 Median 1.0276 1.1285 3.2376 4 0 Median 1.0276 0.88156 5.6207 5 0 Median 266920000 128340000 138580000 15870000 6125200 9744400 3452300 1576400 1875900 31279000 14716000 16563000 0 0 0 179480000 89230000 90246000 36847000 16695000 20152000 38413 2795 40349 203674;203675;203676;203677;203678;203679;203680;203681;203682;203683;203684;203685;203686;203687;203688;203689;203690 207035;207036;207037;207038;207039;207040;207041;207042;207043;207044;207045;207046;207047;207048;207049;207050;207051;207052;207053 207048 19 WKDTDEADLVLAK IGATDSCGDLMFLMKWKDTDEADLVLAKEA MKWKDTDEADLVLAKEANVKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 0 1 1 0 1 0 0 13 1 1502.7617 P45973 P45973 142 154 CBX5 Chromobox protein homolog 5 yes yes 3 0.0090338 26.969 By MS/MS By matching 2 1 0.91885 0.93977 18.124 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9024 0.9136 3.9945 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4353 1.2457 NaN 1 0 Median 10653000 5536200 5117100 0 0 0 0 0 0 5547400 3399200 2148200 0 0 0 0 0 0 5105900 2137000 2968900 38414 2331 40350 203691;203692;203693 207054 207054 1 WKEMADRYDR LDLPIERQPRKMLMKWKEMADRYDRLLETC KMLMKWKEMADRYDRLLETCSIALVGKYTK K W K D R L 1 2 0 2 0 0 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 10 2 1368.6245 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ISY3 P17812 285 294 CTPS1 CTP synthase 1;CTP synthase yes no 3 0.049715 18.957 By MS/MS 1 1.2986 1.311 NaN 1 Median 1.2986 1.311 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3336300 1501900 1834500 3336300 1501900 1834500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38415 2046 40351 203694 207055 207055 1 WKNSDEADLVPAK IGATDSSGELMFLMKWKNSDEADLVPAKEA MKWKNSDEADLVPAKEANVKCPQVVISFYE K W K A K E 2 0 1 2 0 0 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 13 1 1471.7307 P83916;B5MD17;J3KS05 P83916 138 150 CBX1 Chromobox protein homolog 1 yes no 3 0.010688 26.532 By MS/MS 1 0.82665 0.88377 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82665 0.88377 NaN 1 0 Median NaN NaN NaN 0 0 Median 9488900 4876800 4612100 0 0 0 0 0 0 0 0 0 0 0 0 9488900 4876800 4612100 0 0 0 38416 2663 40352 203695 207056 207056 1 WKPGSLASHVK PEVESLQDYKNTFPKWKPGSLASHVKNLDE TFPKWKPGSLASHVKNLDENGLDLLSKMLI K W K V K N 1 0 0 0 0 0 0 1 1 0 1 2 0 0 1 2 0 1 0 1 0 0 11 1 1208.6666 P06493;A0A024QZP7 P06493 244 254 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 3 5.28E-05 80.69 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 2 1 1 1 0.97862 0.94927 32.542 6 Median 1.0589 1.0246 NaN 1 0 Median 0.99438 0.89532 NaN 1 0 Median 0.96311 1.0065 NaN 1 1 Median 0.93941 0.82488 NaN 1 0 Median 1.2978 1.3762 NaN 1 0 Median 0.60382 0.51473 NaN 1 0 Median 72691000 35088000 37604000 31888000 14671000 17218000 11930000 5844700 6085800 9142800 4725800 4417100 16056000 8320900 7734700 2322500 866780 1455700 1351700 659010 692680 38417 1871 40353 203696;203697;203698;203699;203700;203701;203702 207057;207058;207059;207060;207061;207062;207063;207064;207065;207066 207064 10 WKPPMIDNPSYQGIWKPR VWQRPVIDNPNYKGKWKPPMIDNPSYQGIW PMIDNPSYQGIWKPRKIPNPDFFEDLEPFR K W K P R K 0 1 1 1 0 1 0 1 0 2 0 2 1 0 4 1 0 2 1 0 0 0 18 2 2212.1252 P27824 P27824 383 400 CANX Calnexin yes yes 4 8.6064E-05 41.554 By MS/MS By matching 1 1 0.55171 0.59567 4.7093 2 Median 0.55913 0.61584 NaN 1 0 Median 0.54439 0.57616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8882800 5503700 3379100 4973000 3232200 1740800 3909800 2271500 1638300 0 0 0 0 0 0 0 0 0 0 0 0 38418 2158 40354 203703;203704 207067;207068 207068 2 WKPPQGTDSIK SEPAAAAAVVAAGDKWKPPQGTDSIKMENG AGDKWKPPQGTDSIKMENGQSTAAKLGLPP K W K I K M 0 0 0 1 0 1 0 1 0 1 0 2 0 0 2 1 1 1 0 0 0 0 11 1 1255.6561 A0A0J9YVP6;A0A0J9YXX5;Q9UHX1;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6 25 35 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 3 0.045314 29.936 By MS/MS 2 0.84144 0.77695 4.6846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84144 0.77695 4.6846 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6650100 3703800 2946400 0 0 0 0 0 0 0 0 0 6650100 3703800 2946400 0 0 0 0 0 0 38419 284 40355 203705;203706 207069;207070 207069 2 WLAGDVPAAR CPKAEVLWLMGAKSKWLAGDVPAARSILAL GAKSKWLAGDVPAARSILALAFQANPNSEE K W L A R S 3 1 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 10 0 1054.556 O94906 O94906 619 628 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0010001 69.423 By matching By MS/MS By matching 1 1 1 0.88728 1.0123 48.484 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88728 1.0123 NaN 1 0 Median 1.0511 0.89403 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.46908 0.41365 NaN 1 0 Median 19251000 9387500 9863900 0 0 0 0 0 0 15785000 7584900 8200500 3083500 1563800 1519700 0 0 0 382520 238870 143660 38420 1735 40356 203707;203708;203709 207071;207072 207071 2 WLAIDANAR LTSKDPDIKAQYQQRWLAIDANARREVKNY AQYQQRWLAIDANARREVKNYVLQTLGTET R W L A R R 3 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 9 0 1028.5403 Q14974;J3QR48 Q14974 80 88 KPNB1 Importin subunit beta-1 yes no 2 0.0040114 61.999 By matching By MS/MS By MS/MS By MS/MS By matching By matching 3 1 3 2 2 2 0.99198 0.97711 26.418 13 Median 0.98245 0.97711 21.706 3 0 Median 1.687 1.4594 NaN 1 0 Median 0.90482 0.88922 23.749 3 0 Median 1.1433 0.98927 25.205 2 0 Median 0.95658 0.95084 11.521 2 0 Median 1.6378 1.4008 4.9696 2 0 Median 80155000 35846000 44309000 8026900 3779100 4247800 33880000 12552000 21328000 17714000 9576700 8137000 17606000 8508200 9097600 2529700 1284100 1245600 399180 146180 253000 38421 2904 40357 203710;203711;203712;203713;203714;203715;203716;203717;203718;203719;203720;203721;203722 207073;207074;207075;207076;207077 207074 5 WLAPDGLIFPDR FYESMLNTVLYARDKWLAPDGLIFPDRATL RDKWLAPDGLIFPDRATLYVTAIEDRQYKD K W L D R A 1 1 0 2 0 0 0 1 0 1 2 0 0 1 2 0 0 1 0 0 0 0 12 0 1398.7296 E9PKG1;Q99873;E9PQ98;E9PIX6;E9PNR9;H0YDE4 E9PKG1 138 149 PRMT1 Protein arginine N-methyltransferase 1 yes no 2 3.4285E-06 111.06 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.79609 0.76108 11.518 6 Median 0.69341 0.69478 23.186 2 0 Median 0.89308 0.77778 NaN 1 0 Median 0.74286 0.76093 1.9756 2 0 Median 0.88886 0.75067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19302000 10399000 8903600 7436600 3975000 3461600 6062200 3095200 2967000 5585400 3209800 2375600 218050 118710 99345 0 0 0 0 0 0 38422 947 40358 203723;203724;203725;203726;203727;203728 207078;207079;207080;207081;207082;207083;207084;207085 207083 8 WLAVDYENVRPDIVLLGK FIADEIQTGLARTGRWLAVDYENVRPDIVL VDYENVRPDIVLLGKALSGGLYPVSAVLCD R W L G K A 1 1 1 2 0 0 1 1 0 1 3 1 0 0 1 0 0 1 1 3 0 0 18 1 2099.1415 P04181 P04181 275 292 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2;3 0.017968 29.341 By MS/MS By MS/MS By matching By matching 3 2 1 1 0.98516 0.97722 9.0441 7 Median 0.90722 0.97064 4.339 3 0 Median 1.0081 0.93356 6.4636 2 0 Median 0.9985 1.0108 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3041 1.1831 NaN 1 0 Median 10331000 4947500 5383600 2601800 1407200 1194500 5915500 2798300 3117200 1553200 635990 917210 0 0 0 0 0 0 260660 105990 154660 38423 1846 40359 203729;203730;203731;203732;203733;203734;203735 207086;207087 207087 2 WLDESDAEMELR KQEKRPLFLAPDFDRWLDESDAEMELRAKE FDRWLDESDAEMELRAKEEERLNKLRLESE R W L L R A 1 1 0 2 0 0 3 0 0 0 2 0 1 0 0 1 0 1 0 0 0 0 12 0 1492.6504 Q9P035;H3BS72;H3BPZ1 Q9P035 110 121 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes no 2 0.0003417 132.78 By MS/MS By MS/MS 2 3 1.2064 1.0741 11.807 5 Median 0.93364 0.90524 0.82961 2 0 Median 1.4039 1.1414 3.4468 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38159000 17227000 20932000 25828000 12384000 13444000 12331000 4843500 7487900 0 0 0 0 0 0 0 0 0 0 0 0 38424 4200 40360 203736;203737;203738;203739;203740 207088;207089;207090;207091;207092 207088 5 WLEASEEER SAFVPPEEPPLQPARWLEASEEERQVGLRL PLQPARWLEASEEERQVGLRLRICHGKPVT R W L E R Q 1 1 0 0 0 0 4 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 9 0 1147.5146 Q14137 Q14137 515 523 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.01817 70.919 By MS/MS By MS/MS 1 2 1.2243 1.051 19.769 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73522 0.77637 NaN 1 0 Median 1.2951 1.0877 4.851 2 0 Median 5757700 2639900 3117900 0 0 0 0 0 0 0 0 0 0 0 0 3594200 1809200 1785100 2163500 830700 1332800 38425 2856 40361 203741;203742;203743 207093;207094 207094 1 WLESSQHTLNYWK KHLLSYNRDSDQLTKWLESSQHTLNYWKEQ TKWLESSQHTLNYWKEQSLNVSQDLDTIRS K W L W K E 0 0 1 0 0 1 1 0 1 0 2 1 0 0 0 2 1 2 1 0 0 0 13 0 1690.8104 Q8WXH0;G3V5X4;A0A0A0MRE3;A0A0C4DGK3 Q8WXH0 4959 4971 SYNE2 Nesprin-2 yes no 3 0.030852 19.74 By MS/MS By matching 1 1 1.263 1.2605 50.474 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82203 0.88217 NaN 1 0 Median 1.9405 1.8012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6860300 3801500 3058800 0 0 0 0 0 0 6706000 3744500 2961400 154320 57018 97305 0 0 0 0 0 0 38426 3521 40362 203744;203745 207095 207095 1 WLFSTNHK ______________________________ ______________________________ R W L H K D 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 1 1 1 0 0 0 0 8 0 1031.5189 P00395 P00395 6 13 MT-CO1 Cytochrome c oxidase subunit 1 yes yes 2 8.894E-05 115.46 By MS/MS By MS/MS 1 1 1.477 1.3962 44.762 2 Median 1.0145 1.0174 NaN 1 1 Median 2.1503 1.916 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36501000 14192000 22309000 14575000 6922100 7653200 21926000 7269800 14656000 0 0 0 0 0 0 0 0 0 0 0 0 38427 1818 40363 203746;203747 207096;207097 207096 2 WLGNLLAR VWLFFMRGITPLLERWLGNLLARQFEGRHS ITPLLERWLGNLLARQFEGRHSKGVAKTVT R W L A R Q 1 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 Q6P2Q9;I3L0J9 Q6P2Q9 651 658 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.011113 57.559 By matching By matching By MS/MS By matching By MS/MS 2 2 1 2 2 1.1465 1.1438 6.3128 9 Median 1.1232 1.12 2.9776 2 0 Median 1.3756 1.1978 1.6198 2 0 Median 1.0049 1.0993 NaN 1 0 Median 1.3223 1.1534 3.172 2 0 Median 1.0043 1.0581 11.207 2 0 Median NaN NaN NaN 0 0 Median 17603000 8573100 9030000 3250600 1562100 1688500 1299400 586340 713110 9003900 4411100 4592800 732020 309330 422690 3317100 1704300 1612900 0 0 0 38428 3157 40364 203748;203749;203750;203751;203752;203753;203754;203755;203756 207098;207099;207100 207099 3 WLHNEDQMAVEK ASDLEKIHLDEKSFRWLHNEDQMAVEKLSD SFRWLHNEDQMAVEKLSDGIRKFAADAVKL R W L E K L 1 0 1 1 0 1 2 0 1 0 1 1 1 0 0 0 0 1 0 1 0 0 12 0 1498.6875 P37837 P37837 296 307 TALDO1 Transaldolase yes yes 2;3 1.38E-06 115.14 By MS/MS By MS/MS By matching By MS/MS 2 4 1 1 1.275 1.122 28.378 8 Median 1.1254 1.0367 14.96 2 0 Median 1.3132 1.122 13.8 4 0 Median 0.45413 0.53331 NaN 1 0 Median 1.3844 1.1739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 138730000 60096000 78634000 59316000 26007000 33309000 69682000 27561000 42121000 5689600 4764000 925650 4042400 1764000 2278400 0 0 0 0 0 0 38429 2270 40365 203757;203758;203759;203760;203761;203762;203763;203764 207101;207102;207103;207104;207105;207106;207107;207108;207109;207110;207111;207112;207113 207106 13 WLITLNK IEPMWEDEKNKRGGRWLITLNKQQRRSDLD EKNKRGGRWLITLNKQQRRSDLDRFWLETL R W L N K Q 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 1 1 0 0 0 0 7 0 886.52764 D6RBW1;P06730;H0Y8J7 D6RBW1 141 147 EIF4E Eukaryotic translation initiation factor 4E yes no 2 0.034219 47.916 By MS/MS By matching By MS/MS By matching By matching 3 1 1 1 1 1.282 1.211 12.783 7 Median 1.3918 1.2964 12.712 3 0 Plateau 1.4536 1.2411 NaN 1 0 Median 1.282 1.211 NaN 1 0 Median 1.3432 1.1074 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0613 0.90791 NaN 1 0 Median 15556000 6712400 8843100 8665500 3978200 4687200 1209900 498000 711860 5088400 1940600 3147700 514590 264710 249880 0 0 0 77247 30859 46388 38430 818 40366 203765;203766;203767;203768;203769;203770;203771 207114;207115;207116 207116 3 WLLAHCGRPQTECR GFPPSASLCLLDLVKWLLAHCGRPQTECRH KWLLAHCGRPQTECRHKSIELFYKFVPLLP K W L C R H 1 2 0 0 2 1 1 1 1 0 2 0 0 0 1 0 1 1 0 0 0 0 14 1 1782.8406 P78527 P78527 1171 1184 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 4 0.00074134 42.568 By MS/MS 1 1.2088 1.133 NaN 1 Median NaN NaN NaN 0 0 Median 1.2088 1.133 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5839900 2393100 3446800 0 0 0 5839900 2393100 3446800 0 0 0 0 0 0 0 0 0 0 0 0 38431 2647 40367 203772 207117 207117 1 WLLLTGISAQQNR AGCQIINYRTDAKQKWLLLTGISAQQNRVV QKWLLLTGISAQQNRVVGAMQLYSVDRKVS K W L N R V 1 1 1 0 0 2 0 1 0 1 3 0 0 0 0 1 1 1 0 0 0 0 13 0 1498.8256 A0A087WVQ6;Q00610 A0A087WVQ6 168 180 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 2 2.8957E-10 177.06 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 4 1 1.3632 1.2289 16.814 13 Median 1.3801 1.3853 6.4236 4 2 Median 1.375 1.1828 6.9654 4 1 Median 0.87409 0.9548 18.522 4 2 Median 1.5136 1.3333 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 77406000 32837000 44569000 43124000 18497000 24627000 23887000 9769400 14118000 9276200 4136200 5140000 1118500 434390 684060 0 0 0 0 0 0 38432 44 40368 203773;203774;203775;203776;203777;203778;203779;203780;203781;203782;203783;203784;203785;203786 207118;207119;207120;207121;207122;207123;207124;207125;207126;207127;207128;207129;207130;207131;207132;207133;207134;207135;207136;207137;207138 207121 21 WLNDAENLSSDSSLSSPSALNSPGIEGLSR LSFKNMCKLKPLLEKWLNDAENLSSDSSLS SPSALNSPGIEGLSRRRKKRTSIETNIRVA K W L S R R 2 1 3 2 0 0 2 2 0 1 5 0 0 0 2 9 0 1 0 0 0 0 30 0 3102.4742 P14859;A0A0C4DG88;A0A0A0MT46 P14859 349 378 POU2F1 POU domain, class 2, transcription factor 1;POU domain protein yes no 3 0.0020556 28.964 By MS/MS 1 0.74207 0.79418 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74207 0.79418 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2400000 1060500 1339500 0 0 0 0 0 0 2400000 1060500 1339500 0 0 0 0 0 0 0 0 0 38433 2010 40369 203787 207139 207139 1 WLNENAVEK IVCNIGHFDVEIDVKWLNENAVEKVNIKPQ VEIDVKWLNENAVEKVNIKPQVDRYRLKNG K W L E K V 1 0 2 0 0 0 2 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1101.5455 P23526 P23526 310 318 AHCY Adenosylhomocysteinase yes yes 2 0.00095989 88.37 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 2 2 1.2464 1.1816 16.554 8 Median 1.2212 1.1242 25.423 3 0 Median 1.3851 1.1766 4.4419 2 0 Median 1.1369 1.1877 0.29794 2 0 Median 1.353 1.2162 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 105040000 45109000 59928000 47905000 20777000 27129000 37484000 15664000 21819000 9021600 4010000 5011600 10627000 4657800 5968900 0 0 0 0 0 0 38434 2116 40370 203788;203789;203790;203791;203792;203793;203794;203795;203796 207140;207141;207142;207143;207144;207145;207146;207147;207148;207149 207146 10 WLNSPNTYMK PLKYMAQRQQREKTRWLNSPNTYMKVNVPE REKTRWLNSPNTYMKVNVPEESRNGETSPR R W L M K V 0 0 2 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 0 0 0 10 0 1252.591 Q9UEY8 Q9UEY8 439 448 ADD3 Gamma-adducin yes yes 2 0.0030923 57.96 By MS/MS 1 0.71011 0.72892 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71011 0.72892 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8402400 4769200 3633200 0 0 0 0 0 0 8402400 4769200 3633200 0 0 0 0 0 0 0 0 0 38435 4257 40371 203797 207150 207150 1 WLNYGGVIK KLYYRRLFPYSQYYRWLNYGGVIKNYFQHR YSQYYRWLNYGGVIKNYFQHREFSFTLKDD R W L I K N 0 0 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 1 1 1 0 0 9 0 1048.5706 P49642;F8VSB2 P49642 29 37 PRIM1 DNA primase small subunit yes no 2 0.0175 41.652 By matching By matching By MS/MS By matching 1 1 1 2 1.3513 1.2333 12.836 5 Median 1.3513 1.2737 NaN 1 0 Median 1.3923 1.2333 NaN 1 0 Median 0.96764 0.95453 NaN 1 0 Median 1.2969 1.1465 12.627 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12729000 5794100 6934800 5419000 2379100 3039900 613400 244000 369390 4698100 2340600 2357500 1998500 830460 1168000 0 0 0 0 0 0 38436 2388 40372 203798;203799;203800;203801;203802 207151 207151 1 WLPAGDALLQMITIHLPSPVTAQK KDKEGKPLLKAVMRRWLPAGDALLQMITIH QMITIHLPSPVTAQKYRCELLYEGPPDDEA R W L Q K Y 3 0 0 1 0 2 0 1 1 2 4 1 1 0 3 1 2 1 0 1 0 0 24 0 2599.4196 P13639 P13639 343 366 EEF2 Elongation factor 2 yes yes 3 1.4945E-18 82.593 By MS/MS By MS/MS By matching 2 4 1 0.60451 0.52858 31.457 7 Median 0.71835 0.72141 1.8273 2 0 Median 0.55126 0.49641 9.4924 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0039 1.0538 NaN 1 0 Median NaN NaN NaN 0 0 Median 18989000 11315000 7673800 3464300 1986600 1477700 15419000 9263000 6156000 0 0 0 0 0 0 105700 65678 40024 0 0 0 38437 1992 40373 203803;203804;203805;203806;203807;203808;203809 207152;207153;207154 207154 3 WLPLEANPEVTNQFLK ______________________________ LPLEANPEVTNQFLKQLGLHPNWQFVDVYG R W L L K Q 1 0 2 0 0 1 2 0 0 0 3 1 0 1 2 0 1 1 0 1 0 0 16 0 1897.9938 P15374 P15374 6 21 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3 yes yes 2 0.024004 38.634 By MS/MS 1 0.80851 0.75069 NaN 1 Median 0.80851 0.75069 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5221100 2815600 2405500 5221100 2815600 2405500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38438 2017 40374 203810 207155 207155 1 WLPLGLGLNHLGK IMEKSETELKDTYARWLPLGLGLNHLGKGE ARWLPLGLGLNHLGKGEAIEAILAALEVVS R W L G K G 0 0 1 0 0 0 0 3 1 0 5 1 0 0 1 0 0 1 0 0 0 0 13 0 1416.8242 Q13200;H7C1H2 Q13200 557 569 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.0091208 36.693 By matching By MS/MS 1 1 1.0623 0.9872 9.9493 2 Median 1.0716 1.0592 NaN 1 0 Median 1.053 0.92013 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12427000 6350200 6077300 3271600 1513100 1758500 9155900 4837100 4318800 0 0 0 0 0 0 0 0 0 0 0 0 38439 2796 40375 203811;203812 207156;207157 207157 2 WLPVQESSTDDK LTLPPWPIYRRHPLKWLPVQESSTDDKKPG PLKWLPVQESSTDDKKPGERKIKRHAKNN_ K W L D K K 0 0 0 2 0 1 1 0 0 0 1 1 0 0 1 2 1 1 0 1 0 0 12 0 1403.6569 C9JBL1;Q9Y6A9 C9JBL1 55 66 SPCS1 Signal peptidase complex subunit 1 yes no 2 0.0004416 94.692 By MS/MS By MS/MS 1 1 0.90972 0.85154 29.053 2 Median 0.69796 0.6934 NaN 1 0 Median 1.1857 1.0457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14448000 7546200 6901600 4846800 2985500 1861300 9601100 4560700 5040400 0 0 0 0 0 0 0 0 0 0 0 0 38440 689 40376 203813;203814 207158;207159 207159 1 WLPVQESSTDDKKPGER LTLPPWPIYRRHPLKWLPVQESSTDDKKPG PVQESSTDDKKPGERKIKRHAKNN______ K W L E R K 0 1 0 2 0 1 2 1 0 0 1 2 0 0 2 2 1 1 0 1 0 0 17 2 1970.9698 C9JBL1;Q9Y6A9 C9JBL1 55 71 SPCS1 Signal peptidase complex subunit 1 yes no 3;4 5.3037E-14 115.5 By MS/MS By MS/MS By MS/MS 4 4 1 0.81786 0.94008 15.118 9 Median 0.77708 0.83345 11.36 4 1 Median 0.95841 1.056 13.224 4 0 Median 0.78572 1.0427 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98936000 50517000 48419000 28022000 14590000 13432000 68325000 34278000 34047000 2589000 1649200 939800 0 0 0 0 0 0 0 0 0 38441 689 40377 203815;203816;203817;203818;203819;203820;203821;203822;203823 207160;207161;207162;207163;207164;207165;207166;207167;207168;207169;207170 207170 11 WLPYEAGQR KGKKKMSAAEAVKEKWLPYEAGQRFLEFQY EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE K W L Q R F 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 9 0 1118.5509 P15924 P15924 2717 2725 DSP Desmoplakin yes yes 2 0.04318 32.841 By matching By MS/MS 1 2 0.84016 0.76686 6.1863 3 Median NaN NaN NaN 0 0 Median 0.84016 0.73234 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86979 0.79673 5.4039 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1438400 755390 683060 0 0 0 613700 375660 238040 0 0 0 824750 379730 445030 0 0 0 0 0 0 38442 2021 40378 203824;203825;203826 207171 207171 1 WLQDEMFHSDFQHHNK YIEQLKTQMSSCVAKWLQDEMFHSDFQHHN LQDEMFHSDFQHHNKALAVMVDHLESEKEG K W L N K A 0 0 1 2 0 2 1 0 3 0 1 1 1 2 0 1 0 1 0 0 0 0 16 0 2097.9115 Q14008 Q14008 1207 1222 CKAP5 Cytoskeleton-associated protein 5 yes yes 4 0.013229 22.154 By matching By MS/MS By matching 1 2 1 1.1936 1.1852 13.506 4 Median 1.0392 0.99966 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1947 1.3068 6.4232 2 0 Median 1.2375 1.1249 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23859000 11113000 12746000 4242700 1915500 2327200 0 0 0 18228000 8531200 9696300 1388700 666310 722440 0 0 0 0 0 0 38443 2850 40379 203827;203828;203829;203830 207172 207172 1 WLQDLQEENESLK AVLEEKEKDLANTGKWLQDLQEENESLKAH GKWLQDLQEENESLKAHVQEVAQHNLKEAS K W L L K A 0 0 1 1 0 2 3 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 13 0 1630.7839 Q86UP2;G3V4Y7 Q86UP2 896 908 KTN1 Kinectin yes no 2 8.3013E-07 101.95 By MS/MS By matching By matching 1 1 1 1.3664 1.3103 9.6695 3 Median 1.3538 1.3103 NaN 1 0 Median 1.3664 1.1693 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6921 1.4173 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12465000 4782000 7683200 10316000 4003600 6312600 1125800 475870 649890 0 0 0 1023200 302530 720720 0 0 0 0 0 0 38444 3280 40380 203831;203832;203833 207173 207173 1 WLQDNLTLR RLMRQDIDTQKIQERWLQDNLTLRKRNEEL QKIQERWLQDNLTLRKRNEELKEVEEERKQ R W L L R K 0 1 1 1 0 1 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 9 0 1157.6193 Q92878;A0A1W2PQ90 Q92878 1017 1025 RAD50 DNA repair protein RAD50 yes no 2 0.00088636 92.439 By matching By MS/MS 1 1 1.2029 1.1809 4.8089 2 Median NaN NaN NaN 0 0 Median 1.3937 1.2217 NaN 1 0 Median 1.0382 1.1414 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16129000 8008400 8120400 0 0 0 568330 229230 339100 15560000 7779100 7781300 0 0 0 0 0 0 0 0 0 38445 3561 40381 203834;203835 207174 207174 1 WLSCETQLPVSFR EPLPPQYFIRVVSDRWLSCETQLPVSFRHL DRWLSCETQLPVSFRHLILPEKYPPPTELL R W L F R H 0 1 0 0 1 1 1 0 0 0 2 0 0 1 1 2 1 1 0 1 0 0 13 0 1621.7923 O75643;A0A494C1A5 O75643 1275 1287 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0094391 43.512 By MS/MS By MS/MS 1 1 0.87772 0.84607 22.288 2 Median NaN NaN NaN 0 0 Median 1.1834 0.9905 NaN 1 0 Median 0.65102 0.72271 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3332200 1859300 1472900 0 0 0 1668700 837640 831080 1663500 1021700 641850 0 0 0 0 0 0 0 0 0 38446 1688 40382 203836;203837 207175;207176 207176 2 WLSTRPEVASIEPLGLDEQQCSQK TRVNFTLEASEGCYRWLSTRPEVASIEPLG SIEPLGLDEQQCSQKAVVQARLTQPARLTS R W L Q K A 1 1 0 1 1 3 3 1 0 1 3 1 0 0 2 3 1 1 0 1 0 0 24 1 2770.3596 Q8TEM1 Q8TEM1 56 79 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 5.3469E-08 45.395 By matching By MS/MS By matching 1 1 1 0.67805 0.63485 38.403 3 Plateau 0.67805 0.63485 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64307 0.74399 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.33969 0.35848 NaN 1 0 Median NaN NaN NaN 0 0 Median 12243000 7837700 4405100 6607100 3953800 2653300 0 0 0 3697200 2331900 1365300 0 0 0 1938500 1552000 386540 0 0 0 38447 3477 40383 203838;203839;203840 207177 207177 1 WLSTSIPEAQWHSSLAR ELKKVIREPKPRSARWLSTSIPEAQWHSSL STSIPEAQWHSSLARTSSAEYNVNNLVSPV R W L A R T 2 1 0 0 0 1 1 0 1 1 2 0 0 0 1 4 1 2 0 0 0 0 17 0 1967.9854 P49327;A0A0U1RQF0 P49327 712 728 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2;3 7.5019E-12 92.575 By MS/MS By MS/MS By MS/MS 4 4 1 0.91666 0.83919 16.943 9 Median 0.87794 0.83608 3.7897 4 1 Median 1.0451 0.8729 18.36 4 2 Median 1.1097 1.224 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 167170000 84122000 83044000 127850000 66280000 61568000 34548000 15666000 18882000 4770600 2176400 2594200 0 0 0 0 0 0 0 0 0 38448 2377 40384 203841;203842;203843;203844;203845;203846;203847;203848;203849 207178;207179;207180;207181;207182;207183;207184;207185;207186;207187 207178 10 WLTIQSGEQPYK PFLDIQKRFGLNIDRWLTIQSGEQPYKMAG IDRWLTIQSGEQPYKMAGRCHAFEKEWIEC R W L Y K M 0 0 0 0 0 2 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 0 12 0 1448.73 O43920 O43920 17 28 NDUFS5 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 yes yes 2 4.0931E-06 118.18 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1389 1.0126 25.424 4 Median 0.81226 0.73486 NaN 1 0 Median 1.6582 1.3653 NaN 1 0 Median 1.0783 1.0446 NaN 1 1 Median 1.2028 0.9816 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44841000 22707000 22134000 28422000 15645000 12777000 11440000 4496300 6943900 4723300 2457500 2265800 255000 107610 147390 0 0 0 0 0 0 38449 1600 40385 203850;203851;203852;203853 207188;207189;207190;207191;207192 207188 5 WLYQRPQASHQLLR MVEGGGSSTMAQAKRWLYQRPQASHQLLRI RWLYQRPQASHQLLRILTDALVPYLVGQVV R W L L R I 1 2 0 0 0 3 0 0 1 0 3 0 0 0 1 1 0 1 1 0 0 0 14 1 1794.9642 A0A494C0Q8;A0A494C085;P06132;A0A494C0S8;A0A1B0GVN9;Q5T446;A0A494BZY8;A0A1B0GVZ4 A0A494C0Q8 145 158 UROD Uroporphyrinogen decarboxylase yes no 2;3;4 3.2631E-06 89.629 By MS/MS By matching 3 1 1.0474 0.97818 9.8203 3 Median 1.0025 1.0548 12.449 2 0 Median 1.0474 0.97818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67568000 33994000 33574000 61372000 31444000 29928000 6196300 2550100 3646200 0 0 0 0 0 0 0 0 0 0 0 0 38450 458 40386 203854;203855;203856;203857 207193;207194;207195;207196 207195 4 WMDEAQALDTADR AKIYKHAGNIKEAARWMDEAQALDTADRFI ARWMDEAQALDTADRFINSKCAKYMLKANL R W M D R F 3 1 0 3 0 1 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 13 0 1520.6566 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 430 442 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2 9.0305E-07 100.72 By matching By MS/MS By matching By matching By matching 2 4 6 1 1 1.0354 0.94484 27.774 14 Median NaN NaN NaN 0 0 Median 1.0819 0.94484 6.5586 2 0 Median 1.0838 1.1816 18.082 4 0 Median 0.9427 0.8138 15.413 6 0 Median 0.91763 0.8813 NaN 1 0 Median 0.53755 0.46257 NaN 1 0 Median 58526000 28317000 30209000 0 0 0 3788400 1812900 1975500 42050000 19639000 22411000 10977000 6100400 4876500 1585800 692120 893650 124380 72209 52169 38451 213 40387 203858;203859;203860;203861;203862;203863;203864;203865;203866;203867;203868;203869;203870;203871 207197;207198 207197 2 WMEEQAQSLIDK SGRKHKENVKDYYQKWMEEQAQSLIDKTTA YQKWMEEQAQSLIDKTTAAFQQGKIPPTPF K W M D K T 1 0 0 1 0 2 2 0 0 1 1 1 1 0 0 1 0 1 0 0 0 0 12 0 1476.6919 P09234;A0A0A0MRR7 P09234 41 52 SNRPC U1 small nuclear ribonucleoprotein C yes no 2 0.00059476 72.006 By MS/MS By matching 1 1 1.0669 0.92133 1.6816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97083 0.91044 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1725 0.93235 NaN 1 0 Median 33968000 16485000 17482000 0 0 0 0 0 0 29946000 14776000 15170000 0 0 0 0 0 0 4021500 1709000 2312400 38452 169 40388 203872;203873 207199;207200 207200 2 WMGIAFR ECGNDVELSFTKNGKWMGIAFRIQKEALGG LSFTKNGKWMGIAFRIQKEALGGQALYPHV K W M F R I 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 7 0 879.44253 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0 Q9BUJ2 351 357 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.040961 44.611 By matching By matching By matching By MS/MS 2 1 1 1 1.0002 1.0003 16.062 5 Median 1.1028 1.0987 13.271 2 0 Median 1.4948 1.3114 NaN 1 0 Median 0.89775 0.9611 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84212 0.89611 NaN 1 0 Median NaN NaN NaN 0 0 Median 5604700 2779600 2825100 2195400 1080000 1115400 281200 117920 163270 1253800 611120 642690 0 0 0 1874300 970540 903730 0 0 0 38453 3840 40389 203874;203875;203876;203877;203878 207201 207201 1 WMGPIPPAVNAR GSDRMELLAHLLGEKWMGPIPPAVNARL__ GEKWMGPIPPAVNARL______________ K W M A R L 2 1 1 0 0 0 0 1 0 1 0 0 1 0 3 0 0 1 0 1 0 0 12 0 1307.6809 Q9Y2Q3 Q9Y2Q3 214 225 GSTK1 Glutathione S-transferase kappa 1 yes yes 2 0.0052635 41.448 By matching By MS/MS 1 1 0.76978 0.69356 35.962 2 Median NaN NaN NaN 0 0 Median 1.0494 0.89438 NaN 1 0 Median 0.56468 0.53783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4315800 2611900 1703800 0 0 0 954710 397180 557530 3361100 2214800 1146300 0 0 0 0 0 0 0 0 0 38454 4386 40390 203879;203880 207202 207202 1 WMIQYNNLNLK VESAKRFLEKFKPGKWMIQYNNLNLKTPVP KPGKWMIQYNNLNLKTPVPSDIDISRSCKP K W M L K T 0 0 3 0 0 1 0 0 0 1 2 1 1 0 0 0 0 1 1 0 0 0 11 0 1435.7282 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 303 313 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 0.00013475 86.011 By MS/MS By MS/MS By MS/MS 1 1 2 1.1058 1.1662 6.8551 4 Median 1.0774 1.0411 NaN 1 0 Median 1.3822 1.2188 NaN 1 0 Median 1.1058 1.1662 2.1922 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23008000 10921000 12086000 14133000 6687500 7445000 2587600 1143000 1444500 6287800 3090900 3196900 0 0 0 0 0 0 0 0 0 38455 1968 40391 203881;203882;203883;203884 207203;207204;207205;207206 207206 4 WNDGLDQYR DWLVGGDLQVLEKIRWNDGLDQYRLTPLEL VLEKIRWNDGLDQYRLTPLELKQKCKEMNA R W N Y R L 0 1 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 9 0 1165.5152 O95340 O95340 379 387 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.041602 33.263 By MS/MS 1 1.3523 1.1701 NaN 1 Median NaN NaN NaN 0 0 Median 1.3523 1.1701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2032700 834540 1198200 0 0 0 2032700 834540 1198200 0 0 0 0 0 0 0 0 0 0 0 0 38456 1765 40392 203885 207207 207207 1 WNENVQYLSEDR LSLPAEFPDKVFAEKWNENVQYLSEDRSVQ AEKWNENVQYLSEDRSVQEVLQKHFNISKN K W N D R S 0 1 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 12 0 1551.6954 O43929 O43929 249 260 ORC4 Origin recognition complex subunit 4 yes yes 2 8.278E-40 185.18 By MS/MS By MS/MS 1 1 0.83753 0.77389 4.4358 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81164 0.79855 NaN 1 1 Median 0.86424 0.74999 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18578000 9712100 8865600 0 0 0 0 0 0 14138000 7361200 6777000 4439400 2350900 2088600 0 0 0 0 0 0 38457 1602 40393 203886;203887 207208;207209 207208 2 WNFTTPR KEQRMKDEKGLKVLKWNFTTPRDEYIEQLK EKGLKVLKWNFTTPRDEYIEQLKTQMSSCV K W N P R D 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 7 0 920.45045 Q14008 Q14008 1183 1189 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.02008 60.76 By matching By MS/MS 1 1 0.99932 0.98763 21.348 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0333 1.1486 NaN 1 0 Median 0.96643 0.84925 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4166700 1997500 2169200 0 0 0 0 0 0 2809600 1301900 1507800 1357100 695620 661480 0 0 0 0 0 0 38458 2850 40394 203888;203889 207210 207210 1 WNMQALDMIR QPNTTDEFVIPLDPRWNMQALDMIRNLMDF PLDPRWNMQALDMIRNLMDFDPQTDQPDQL R W N I R N 1 1 1 1 0 1 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 0 10 0 1276.6056 Q9NU22 Q9NU22 2599 2608 MDN1 Midasin yes yes 2 0.00041856 75.378 By MS/MS 2 0.75592 0.81054 51.121 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75592 0.81054 51.121 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11845000 6914800 4930000 0 0 0 0 0 0 11845000 6914800 4930000 0 0 0 0 0 0 0 0 0 38459 4112 40395;40396 203890;203891 207211;207212;207213 207212 1883 3 WNQDTMEQK ATPLDFPSKKRKRSRWNQDTMEQKTVIPGM KRKRSRWNQDTMEQKTVIPGMPTVIPPGLT R W N Q K T 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 9 0 1178.5026 Q15637;F8WEV5 Q15637 22 30 SF1 Splicing factor 1 yes no 2 0.037899 34.253 By matching By MS/MS By matching 1 1 1 1.1364 1.0449 3.474 3 Median NaN NaN NaN 0 0 Median 1.1364 1.0257 NaN 1 0 Median 1.0215 1.0449 NaN 1 0 Median 1.2622 1.097 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10187000 4772300 5414500 0 0 0 438300 203880 234420 9104000 4303500 4800500 644560 264980 379580 0 0 0 0 0 0 38460 2959 40397 203892;203893;203894 207214 207214 1 WNSIEER GDDIPSALRIAKKKRWNSIEERRIHQESEL LRIAKKKRWNSIEERRIHQESELHSYLSRL R W N E R R 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 7 0 932.43519 Q9UNE7;H3BTA3;H3BS86;H3BUD0 Q9UNE7 147 153 STUB1 E3 ubiquitin-protein ligase CHIP yes no 2 0.025229 54.549 By MS/MS 1 1.1802 0.99237 NaN 1 Median NaN NaN NaN 0 0 Median 1.1802 0.99237 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2176300 1055500 1120800 0 0 0 2176300 1055500 1120800 0 0 0 0 0 0 0 0 0 0 0 0 38461 4342 40398 203895 207215 207215 1 WNTEDKVSHVSTGGGASLELLEGK ITIIGGGDTATCCAKWNTEDKVSHVSTGGG VSTGGGASLELLEGKVLPGVDALSNI____ K W N G K V 1 0 1 1 0 0 3 4 1 0 3 2 0 0 0 3 2 1 0 2 0 0 24 1 2513.2398 P00558;P07205 P00558 383 406 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 3;4 7.7899E-12 53.266 By MS/MS By matching By matching By matching 4 1 1 1 1.222 1.1671 20.212 7 Median 1.1334 1.0677 22.882 4 0 Median 1.6714 1.5161 NaN 1 0 Median 0.94884 1.034 NaN 1 0 Median 1.3308 1.264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66284000 31933000 34351000 54939000 27377000 27561000 1603600 631410 972220 6020800 2417900 3602800 3721200 1506400 2214700 0 0 0 0 0 0 38462 1824 40399 203896;203897;203898;203899;203900;203901;203902 207216;207217;207218;207219 207218 4 WNTTLYEGTWR CNLTPDALKSRTIRKWNTTLYEGTWRRGST TIRKWNTTLYEGTWRRGSTAGGCRNYPATF K W N W R R 0 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 3 2 1 0 0 0 11 0 1425.6677 P07384 P07384 366 376 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.00065076 65.347 By matching By MS/MS 1 1 0.959 1.0039 25.658 2 Median 0.81415 0.83733 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1296 1.2036 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11939000 4818500 7120500 9107400 3571900 5535500 0 0 0 2831700 1246700 1585000 0 0 0 0 0 0 0 0 0 38463 1886 40400 203903;203904 207220 207220 1 WNVEDVYEFIR LVGMGHHFLPSEPTKWNVEDVYEFIRSLPG EPTKWNVEDVYEFIRSLPGCQEIAEEFRAQ K W N I R S 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 0 1 1 2 0 0 11 0 1468.6987 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 794 804 PHC2 Polyhomeotic-like protein 2 yes no 2 0.0054074 46.158 By MS/MS By matching 1 1 1.111 1.0618 1.3609 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98939 1.0721 NaN 1 0 Median 1.2474 1.0517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3599300 1758600 1840700 0 0 0 0 0 0 3351800 1672000 1679800 247490 86602 160890 0 0 0 0 0 0 38464 180 40401 203905;203906 207221;207222 207221 2 WNVSRPSLLADSK MNSSCADILLFASYKWNVSRPSLLADSKDV YKWNVSRPSLLADSKDVMDSTTTQKYWIDI K W N S K D 1 1 1 1 0 0 0 0 0 0 2 1 0 0 1 3 0 1 0 1 0 0 13 1 1471.7783 Q6P2Q9 Q6P2Q9 1637 1649 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0.0010745 90.697 By MS/MS By matching 2 2 0.93029 1.0006 12.316 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73969 0.88666 15.256 2 1 Median 1.0839 1.0279 1.9688 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27596000 14986000 12610000 0 0 0 0 0 0 26417000 14378000 12039000 1179000 607770 571220 0 0 0 0 0 0 38465 3157 40402 203907;203908;203909;203910 207223;207224;207225 207225 3 WPDFNQEAYVGGTMVR EKAQSMETLPPGKVRWPDFNQEAYVGGTMV PDFNQEAYVGGTMVRSGQDPYARNKFNQVE R W P V R S 1 1 1 1 0 1 1 2 0 0 0 0 1 1 1 0 1 1 1 2 0 0 16 0 1868.8516 Q10471 Q10471 78 93 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 2 0.056866 21.301 By MS/MS 1 1.3629 1.3827 NaN 1 Median 1.3629 1.3827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1450000 604770 845260 1450000 604770 845260 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38466 2751 40403 203911 207226 207226 1 WPEVDDDSIEDLGEVKK QGDFTDDIIDVIQEKWPEVDDDSIEDLGEV EVDDDSIEDLGEVKK_______________ K W P K K - 0 0 0 4 0 0 3 1 0 1 1 2 0 0 1 1 0 1 0 2 0 0 17 1 1972.9266 O43583 O43583 182 198 DENR Density-regulated protein yes yes 3 0.00038915 37.042 By MS/MS By MS/MS 2 2 1.0735 1.0185 18.431 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1305 1.2317 17.369 2 0 Median 1.0735 0.94262 1.431 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15406000 7606800 7798700 0 0 0 0 0 0 13257000 6626900 6630200 2148400 979870 1168600 0 0 0 0 0 0 38467 1575 40404 203912;203913;203914;203915 207227;207228;207229;207230 207227 4 WPFWLSPR VERMIAILTENYGGKWPFWLSPRQVMVVPV TENYGGKWPFWLSPRQVMVVPVGPTCDEYA K W P P R Q 0 1 0 0 0 0 0 0 0 0 1 0 0 1 2 1 0 2 0 0 0 0 8 0 1087.5603 P26639;B7ZLP8;A2RTX5 P26639 612 619 TARS;TARSL2 Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic yes no 2 0.028978 40.002 By MS/MS By matching By MS/MS 1 1 2 0.89117 0.91347 9.5116 4 Median 0.90327 0.89351 NaN 1 0 Median 0.88992 0.77113 NaN 1 0 Median 0.88859 0.94246 1.2935 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10390000 5335500 5054500 2018800 1049300 969450 3701500 1904000 1797500 4669600 2382100 2287500 0 0 0 0 0 0 0 0 0 38468 2147 40405 203916;203917;203918;203919 207231;207232;207233 207233 3 WPQPWALGQVVTK PLLPAALQAPTQILKWPQPWALGQVVTKTM LKWPQPWALGQVVTKTMVNTVVANASFTYL K W P T K T 1 0 0 0 0 2 0 1 0 0 1 1 0 0 2 0 1 2 0 2 0 0 13 0 1508.814 Q9UFC0;H7C5N7 Q9UFC0 605 617 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0017884 50.194 By MS/MS By matching 2 2 0.80153 0.7838 4.8002 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7001 0.76984 7.9372 2 0 Median 0.88886 0.7838 1.7017 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3881500 2319300 1562100 0 0 0 0 0 0 3528300 2157200 1371100 353190 162140 191060 0 0 0 0 0 0 38469 4258 40406 203920;203921;203922;203923 207234 207234 1 WPTETDVSSAK ELPTEKEVALVKDVRWPTETDVSSAKNVVL KDVRWPTETDVSSAKNVVLPTETEVAPAKD R W P A K N 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 2 2 1 0 1 0 0 11 0 1219.5721 E7EVA0;P27816 E7EVA0 339 349 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 yes no 2 0.00027281 73.067 By matching By MS/MS By MS/MS 1 1 3 1.4793 1.5089 38.558 4 Linear 0.78692 0.75712 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5274 1.6321 NaN 1 0 Median 0.90769 0.80127 20.938 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21564000 10383000 11181000 3270400 1731300 1539000 0 0 0 10559000 4441900 6117000 7734300 4209800 3524600 0 0 0 0 0 0 38470 895 40407 203924;203925;203926;203927;203928 207235;207236;207237;207238;207239;207240 207236 6 WPVAGQIR GTLQTRTQEGSLSARWPVAGQIRATQQQHD EGSLSARWPVAGQIRATQQQHDFTLTQTAD R W P I R A 1 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 1 0 0 8 0 925.51339 P78527 P78527 2629 2636 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0023085 133.95 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 2 2 1 1 0.82694 0.88341 17.752 9 Median 0.80948 0.78909 3.622 2 0 Median 1.2198 0.97546 NaN 1 0 Median 0.78324 0.83505 7.9611 2 0 Median 1.34 1.1746 9.5161 2 0 Median 0.77053 0.80675 NaN 1 0 Median 1.3321 1.0952 NaN 1 0 Median 163410000 87835000 75580000 31344000 17474000 13870000 27965000 12355000 15610000 89890000 51614000 38275000 9145300 3796600 5348700 4568900 2408000 2160900 502010 187110 314910 38471 2647 40408 203929;203930;203931;203932;203933;203934;203935;203936;203937 207241;207242;207243;207244;207245;207246;207247;207248;207249;207250;207251;207252;207253;207254;207255;207256;207257 207243 17 WQAVLAQTDVR EVERWRERVAQLLERWQAVLAQTDVRQREL LLERWQAVLAQTDVRQRELEQLGRQLRYYR R W Q V R Q 2 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 11 0 1285.6779 Q15149;H0YDN1 Q15149 1325 1335 PLEC Plectin yes no 2 0.00014249 116.3 By MS/MS By MS/MS By MS/MS 1 2 1 1.4322 1.19 11.354 4 Median 1.2355 1.1932 NaN 1 0 Median 1.4322 1.172 1.7801 2 0 Median NaN NaN NaN 0 0 Median 1.6958 1.4773 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93028000 39911000 53117000 57208000 25276000 31932000 32087000 13467000 18620000 0 0 0 3733200 1167500 2565700 0 0 0 0 0 0 38472 2933 40409 203938;203939;203940;203941 207258;207259;207260 207260 3 WQDIQNDPR DYWLLAGIINHGYARWQDIQNDPRYAILNE NHGYARWQDIQNDPRYAILNEPFKGEMNRG R W Q P R Y 0 1 1 2 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 9 0 1170.5418 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9;Q8TDI0 Q14839 1749 1757 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.00091857 90.657 By MS/MS By MS/MS By matching 1 1 1 0.81869 0.89232 7.6175 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81869 0.89232 NaN 1 0 Median 0.87335 0.76685 NaN 1 0 Median 0.77683 0.81603 NaN 1 0 Median NaN NaN NaN 0 0 Median 23290000 11996000 11294000 0 0 0 0 0 0 17975000 9143500 8831100 2202500 1146200 1056300 3112800 1706300 1406500 0 0 0 38473 246;3471 40410 203942;203943;203944 207261;207262;207263 207261 3 WQFTLPMMSTLYR LRDSRKYVNGSTYQRWQFTLPMMSTLYRLA QRWQFTLPMMSTLYRLANQLLTDLVDDNYF R W Q Y R L 0 1 0 0 0 1 0 0 0 0 2 0 2 1 1 1 2 1 1 0 0 0 13 0 1672.8106 Q6P2Q9;I3L0J9 Q6P2Q9 228 240 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.040448 25.938 By matching By MS/MS By matching 1 1 1 0.85449 0.93542 2.6525 3 Median NaN NaN NaN 0 0 Median 1.0741 0.94706 NaN 1 0 Median 0.8426 0.93542 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85449 0.9001 NaN 1 0 Median NaN NaN NaN 0 0 Median 2991100 1584400 1406700 0 0 0 481220 234060 247160 2086400 1142400 943960 0 0 0 423490 207900 215600 0 0 0 38474 3157 40411 203945;203946;203947 207264 207264 1 WQHDLFDSGFGGGAGVETGGK NRPAPYSRPKQLPDKWQHDLFDSGFGGGAG DSGFGGGAGVETGGKLLVSNLDFGVSDADI K W Q G K L 1 0 0 2 0 1 1 7 1 0 1 1 0 2 0 1 1 1 0 1 0 0 21 0 2120.9552 Q86V81;E9PB61 Q86V81 87 107 ALYREF THO complex subunit 4 yes no 3 1.2369E-14 95.227 By MS/MS By MS/MS By matching 1 1 1 1.3772 1.1523 8.0785 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1005 1.0594 NaN 1 0 Median 1.4555 1.2451 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3772 1.1523 NaN 1 0 Median 14560000 6769500 7790600 0 0 0 0 0 0 13800000 6456300 7343700 451670 183150 268520 0 0 0 308510 130100 178410 38475 3286 40412 203948;203949;203950 207265;207266;207267 207265 3 WQIGEQEFEALMR SPGSPVGEGTGSPPKWQIGEQEFEALMRML PKWQIGEQEFEALMRMLDNLGYRTGYPYRY K W Q M R M 1 1 0 0 0 2 3 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 13 0 1635.7715 E7EV99;E7ENY0;P35611;A0A0A0MSR2;H0Y9H2 E7EV99 370 382 ADD1 Alpha-adducin yes no 2 0.0011223 58.978 By MS/MS 1 0.86116 0.92355 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86116 0.92355 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3610700 1837800 1772900 0 0 0 0 0 0 3610700 1837800 1772900 0 0 0 0 0 0 0 0 0 38476 866 40413 203951 207268;207269 207269 2 WQLSVATEQPELEGPR ASVTEIQEKWHDSRRWQLSVATEQPELEGP QLSVATEQPELEGPREGYGGFRGQREGSRG R W Q P R E 1 1 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 16 0 1838.9163 Q9NR30 Q9NR30 703 718 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.72E-10 161.99 By matching By MS/MS By matching By MS/MS 1 1 1 1 0.70047 0.66099 32.239 4 Median NaN NaN NaN 0 0 Median 0.53715 0.47118 NaN 1 0 Median 0.95915 1.0144 NaN 1 0 Median 0.84164 0.72245 NaN 1 0 Median 0.58298 0.60475 NaN 1 0 Median NaN NaN NaN 0 0 Median 36990000 19778000 17212000 0 0 0 1565500 933920 631590 28445000 14509000 13936000 885290 465700 419590 6094300 3869700 2224600 0 0 0 38477 4076 40414 203952;203953;203954;203955 207270;207271;207272 207270 3 WQLYAAQSTK SLPLRVSFCPLSLWRWQLYAAQSTKSPWNF LSLWRWQLYAAQSTKSPWNFLGDELYEQSD R W Q T K S 2 0 0 0 0 2 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 10 0 1194.6033 O96005 O96005 315 324 CLPTM1 Cleft lip and palate transmembrane protein 1 yes yes 2 2.0468E-07 135.71 By MS/MS 2 1.2782 1.1365 NaN 1 Median NaN NaN NaN 0 0 Median 1.2782 1.1365 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14164000 5450000 8714000 0 0 0 14164000 5450000 8714000 0 0 0 0 0 0 0 0 0 0 0 0 38478 1805 40415 203956;203957 207273;207274 207273 2 WQMNPYDR ______________________________ DFSVLNKWQMNPYDRGSAFAIGSDGLCCQS K W Q D R G 0 1 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 8 0 1108.476 A0A087X2G1;F1T0B3;Q92499 A0A087X2G1 10 17 DDX1 ATP-dependent RNA helicase DDX1 yes no 2 0.023052 44.447 By matching By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2259 1.039 27.55 5 Median 0.92406 0.90494 NaN 1 0 Median 1.2552 1.0877 NaN 1 0 Median 1.6972 1.7656 NaN 1 0 Median 1.0501 0.90462 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2259 1.039 NaN 1 0 Median 13564000 5802400 7761400 2670800 1284400 1386500 3635000 1559700 2075300 5762100 2216500 3545600 1407500 701830 705700 0 0 0 88277 40073 48204 38479 135 40416 203958;203959;203960;203961;203962 207275;207276 207276 2 WQNNLLPSR VISPRFDVQLKDLEKWQNNLLPSRQFG___ LKDLEKWQNNLLPSRQFG____________ K W Q S R Q 0 1 2 0 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 9 0 1126.5883 I3L3P7;P62244;H3BVC7 I3L3P7 89 97 RPS15A 40S ribosomal protein S15a yes no 2 1.7099E-10 171.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.0808 0.98506 14.57 6 Median 1.0222 0.98196 12.419 2 0 Median 1.0569 0.89203 2.0563 2 0 Median 1.1715 1.1859 NaN 1 0 Median 1.5374 1.2088 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 323120000 156100000 167020000 53527000 25730000 27797000 250580000 121470000 129110000 14967000 7329500 7637200 4043300 1575300 2467900 0 0 0 0 0 0 38480 1289 40417 203963;203964;203965;203966;203967;203968;203969 207277;207278;207279;207280;207281;207282;207283;207284;207285;207286;207287;207288;207289;207290;207291;207292;207293;207294;207295 207293 19 WQNSYSIK SSGMVDARSIPVLAKWQNSYSIKVVLQELR SIPVLAKWQNSYSIKVVLQELRRLMMSKEN K W Q I K V 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 2 0 1 1 0 0 0 8 0 1024.4978 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3;Q15819;G3V113;H0YBP9 Q15819 109 116 UBE2V1;TMEM189-UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 2 0.0059586 73.26 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1.0788 1.0192 22.993 5 Median 1.0788 1.0192 NaN 1 0 Median 1.1989 1.0251 NaN 1 0 Median 1.1427 1.0985 NaN 1 0 Median 0.86896 0.71098 16.806 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32766000 14855000 17912000 9486100 4302400 5183700 15160000 6686400 8473800 6723000 3166300 3556700 1397100 699740 697400 0 0 0 0 0 0 38481 2973;2809 40418 203970;203971;203972;203973;203974 207296;207297;207298;207299;207300 207299 5 WQPDTEEEYEDSSGNVVNKK VSLWAKLKLQKASERWQPDTEEEYEDSSGN EEEYEDSSGNVVNKKTYEDLKRQGLL____ R W Q K K T 0 0 2 2 0 1 4 1 0 0 0 2 0 0 1 2 1 1 1 2 0 0 20 1 2353.0346 Q12874 Q12874 471 490 SF3A3 Splicing factor 3A subunit 3 yes yes 3 2.2426E-19 114.96 By MS/MS By matching By matching By MS/MS By MS/MS By matching 1 1 1 2 1 1 0.97767 0.9605 9.6203 7 Median 0.87704 0.8175 NaN 1 0 Median 1.0541 0.98726 NaN 1 0 Median 0.97767 1.0654 NaN 1 0 Median 0.98439 0.94571 2.1951 2 0 Median 0.77858 0.83142 NaN 1 0 Median 1.108 0.98749 NaN 1 0 Median 73392000 40095000 33297000 28951000 16479000 12472000 3512100 1815900 1696200 3223800 1873500 1350400 14462000 7059300 7402900 21323000 11929000 9394200 1919600 938190 981410 38482 2767 40419 203975;203976;203977;203978;203979;203980;203981 207301;207302;207303;207304;207305;207306;207307;207308 207304 8 WQPGEEPAGSVVQDSR FEKLKPVHGLIFLFKWQPGEEPAGSVVQDS QPGEEPAGSVVQDSRLDTIFFAKQVINNAC K W Q S R L 1 1 0 1 0 2 2 2 0 0 0 0 0 0 2 2 0 1 0 2 0 0 16 0 1740.8067 Q5LJA5;Q5LJA9;Q9Y5K5;Q5LJB0 Q5LJA5 58 73 UCHL5 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L5 yes no 2 0.046755 22.533 By matching By matching By matching By MS/MS 1 1 1 1 0.87261 0.81549 10.175 4 Median 0.73168 0.72945 NaN 1 0 Median 1.049 0.92976 NaN 1 0 Median 0.85184 0.83831 NaN 1 0 Median 0.89388 0.79329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7618100 4320100 3297900 3221200 1826800 1394400 472020 189150 282860 2852700 1859700 993010 1072100 444460 627620 0 0 0 0 0 0 38483 3064 40420 203982;203983;203984;203985 207309 207309 1 WQQHQGLLPPGMTIDLFR VPPSRLMALLGQALKWQQHQGLLPPGMTID HQGLLPPGMTIDLFRGKAAVKDVEEEKFPT K W Q F R G 0 1 0 1 0 3 0 2 1 1 3 0 1 1 2 0 1 1 0 0 0 0 18 0 2136.0939 Q2TAY7 Q2TAY7 171 188 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3 3.1594E-08 88.992 By matching By MS/MS By matching 1 1 1 0.7812 0.69126 53.815 3 Median NaN NaN NaN 0 0 Median 0.33902 0.31912 NaN 1 0 Median 0.8953 0.89844 NaN 1 0 Median 0.7812 0.69126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6723200 3804700 2918500 0 0 0 1837800 1326800 511010 4826200 2449100 2377100 59205 28853 30352 0 0 0 0 0 0 38484 3005 40421 203986;203987;203988 207310;207311 207311 2 WQSLKDLVK KRYRAFITNIPFDVKWQSLKDLVKEKVGEV IPFDVKWQSLKDLVKEKVGEVTYVELLMDA K W Q V K E 0 0 0 1 0 1 0 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 9 1 1115.6339 A0A087X0X3;P52272;M0R019;M0R2T0;M0R0N3;M0QYQ7;M0R0Y6 A0A087X0X3 84 92 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 0.0024062 119.21 By MS/MS By MS/MS By matching 1 2 1 0.89235 1.0015 19.039 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95229 1.0719 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83612 0.91356 3.3851 2 0 Median 1.5085 1.3639 NaN 1 0 Median 25192000 13481000 11711000 0 0 0 0 0 0 5020500 2157900 2862600 0 0 0 18962000 10820000 8141900 1209400 502570 706860 38485 116 40422 203989;203990;203991;203992 207312;207313 207313 2 WQSSSPRPVALALQQALGQELAR AGMFLQIFPLSPDPRWQSSSPRPVALALQQ VALALQQALGQELARVVQGSPEVPGITVRV R W Q A R V 4 2 0 0 0 4 1 1 0 0 4 0 0 0 2 3 0 1 0 1 0 0 23 1 2505.3452 Q8N201 Q8N201 1368 1390 INTS1 Integrator complex subunit 1 yes yes 3 0.011039 19.722 By MS/MS 1 0.84789 1.0711 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84789 1.0711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1874100 1063400 810740 0 0 0 0 0 0 1874100 1063400 810740 0 0 0 0 0 0 0 0 0 38486 3360 40423 203993 207314;207315 207314 2 WQTLLSVDDLVEK TNSSIQFLDNAFRKRWQTLLSVDDLVEKLV KRWQTLLSVDDLVEKLVKRLEFTGELNNTY R W Q E K L 0 0 0 2 0 1 1 0 0 0 3 1 0 0 0 1 1 1 0 2 0 0 13 0 1544.8086 P15586;H7C3P4;F6S8M0;H0YFA9;F5H4C6 P15586 293 305 GNS N-acetylglucosamine-6-sulfatase yes no 2 0.0038536 42.743 By MS/MS 2 1.5098 1.307 65.702 2 Median NaN NaN NaN 0 0 Median 1.5098 1.307 65.702 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11990000 5473200 6516500 0 0 0 11990000 5473200 6516500 0 0 0 0 0 0 0 0 0 0 0 0 38487 2019 40424 203994;203995 207316;207317 207317 2 WQVVDTPGILDHPLEDR TKSLFVGHMDYKYLRWQVVDTPGILDHPLE VVDTPGILDHPLEDRNTIEMQAITALAHLR R W Q D R N 0 1 0 3 0 1 1 1 1 1 2 0 0 0 2 0 1 1 0 2 0 0 17 0 1988.9956 Q9BZE4 Q9BZE4 217 233 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 0.0010479 32.688 By MS/MS 2 0.76892 0.79574 4.709 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76892 0.79574 4.709 2 0 Median NaN NaN NaN 0 0 Median 3546600 1817300 1729200 0 0 0 0 0 0 0 0 0 0 0 0 3546600 1817300 1729200 0 0 0 38488 3898 40425 203996;203997 207318 207318 1 WREFSTNNPFK PKIAVSKMMMVLGAKWREFSTNNPFKGSSG LGAKWREFSTNNPFKGSSGASVAAAAAAAV K W R F K G 0 1 2 0 0 0 1 0 0 0 0 1 0 2 1 1 1 1 0 0 0 0 11 1 1424.6837 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;F5H6N4 Q14839 209 219 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 4.3081E-05 86.014 By MS/MS 2 0.95918 1.1498 2.8654 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95918 1.1498 2.8654 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21084000 10939000 10145000 0 0 0 0 0 0 21084000 10939000 10145000 0 0 0 0 0 0 0 0 0 38489 246 40426 203998;203999 207319;207320;207321;207322 207320 4 WREHSAFQAPAVK QAFMMWKFINFQLRRWREHSAFQAPAVKKK RRWREHSAFQAPAVKKKPTVTKGRSSKKGT R W R V K K 3 1 0 0 0 1 1 0 1 0 0 1 0 1 1 1 0 1 0 1 0 0 13 1 1525.779 G3XAN4;Q15629 G3XAN4 237 249 TRAM1 Translocating chain-associated membrane protein 1 yes no 3 1.442E-05 89.46 By MS/MS By MS/MS By matching 1 1 1 0.75307 0.76204 24.506 3 Median 0.73852 0.76204 NaN 1 0 Median 0.75307 0.69701 NaN 1 0 Median 0.9577 1.1063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20783000 9945600 10837000 6280200 3141500 3138700 12765000 6163000 6601800 1738000 641100 1096900 0 0 0 0 0 0 0 0 0 38490 1126 40427 204000;204001;204002 207323;207324 207324 2 WRELPDSK PDAKTTELIRRIAQRWRELPDSKKKIYQDA IRRIAQRWRELPDSKKKIYQDAYRAEWQVY R W R S K K 0 1 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 8 1 1029.5243 Q00059;H7BYN3 Q00059 88 95 TFAM Transcription factor A, mitochondrial yes no 2 0.016997 86.833 By MS/MS 1 1.0178 1.0562 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0178 1.0562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5554100 2523400 3030700 0 0 0 0 0 0 5554100 2523400 3030700 0 0 0 0 0 0 0 0 0 38491 2673 40428 204003 207325;207326 207326 2 WSEPNEEELIK FLEPEVLDPESVELKWSEPNEEELIKFMCG VELKWSEPNEEELIKFMCGEKQFSEERIRS K W S I K F 0 0 1 0 0 0 4 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 11 0 1372.6511 P39748;I3L3E9 P39748 298 308 FEN1 Flap endonuclease 1 yes no 2 0.00016921 95.775 By matching By matching By MS/MS By MS/MS By matching 1 2 2 2 1 0.88031 0.80024 11.521 8 Median 0.75833 0.70796 NaN 1 0 Median 0.89814 0.77081 3.4993 2 0 Median 0.88022 0.87183 4.5428 2 0 Median 0.9805 0.85883 8.1916 2 0 Median NaN NaN NaN 0 0 Median 0.76835 0.65292 NaN 1 0 Median 244590000 127740000 116850000 5067700 2696700 2371000 7335900 3915900 3420000 146110000 77674000 68432000 85265000 43025000 42240000 0 0 0 817600 426400 391190 38492 2283 40429 204004;204005;204006;204007;204008;204009;204010;204011 207327;207328;207329;207330;207331;207332;207333 207327 7 WSETQNVVTK EEDSLLNICKEIVERWSETQNVVTKVKKED EIVERWSETQNVVTKVKKEDEVQAIATLIE R W S T K V 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 2 1 0 2 0 0 10 0 1190.5932 Q96MW1;Q86WV7;K7ER24 Q96MW1 84 93 CCDC43 Coiled-coil domain-containing protein 43 yes no 2 0.052346 27.329 By MS/MS 1 1.076 1.0221 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.076 1.0221 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3763000 1938700 1824300 0 0 0 0 0 0 3763000 1938700 1824300 0 0 0 0 0 0 0 0 0 38493 3296 40430 204012 207334 207334 1 WSGLLVTVGEVLEK VQQAQSLTPQDYNLRWSGLLVTVGEVLEKS RWSGLLVTVGEVLEKSLLNVSRTDWHMAFT R W S E K S 0 0 0 0 0 0 2 2 0 0 3 1 0 0 0 1 1 1 0 3 0 0 14 0 1528.8501 Q96M27 Q96M27 389 402 PRRC1 Protein PRRC1 yes yes 2 0.00015703 80.014 By MS/MS 1 1.5201 1.2919 NaN 1 Median NaN NaN NaN 0 0 Median 1.5201 1.2919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6343700 2516400 3827300 0 0 0 6343700 2516400 3827300 0 0 0 0 0 0 0 0 0 0 0 0 38494 3703 40431 204013 207335 207335 1 WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK ______________________________ LHVTYAGAAVDELGKVLTPTQVKNRPTSIS K W S G K V 3 0 0 2 0 3 3 3 2 0 4 1 0 0 3 2 1 1 1 3 0 0 32 0 3470.7106 P30086 P30086 8 39 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 4 0.042037 9.9351 By MS/MS By matching 1 1 0.77876 0.68811 13.523 2 Median 0.67259 0.62536 NaN 1 0 Median 0.90169 0.75716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12289000 7364300 4924400 6345800 4010900 2334800 5942900 3353300 2589500 0 0 0 0 0 0 0 0 0 0 0 0 38495 2188 40432 204014;204015 207336 207336 1 WSLELEDQER SSAMTYAQLESLINKWSLELEDQERHFLQQ SLINKWSLELEDQERHFLQQATQVNAWDRT K W S E R H 0 1 0 1 0 1 3 0 0 0 2 0 0 0 0 1 0 1 0 0 0 0 10 0 1303.6044 P37198 P37198 340 349 NUP62 Nuclear pore glycoprotein p62 yes yes 2 0.016856 54.608 By MS/MS 1 1.4871 1.2459 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4871 1.2459 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 817080 266910 550170 0 0 0 0 0 0 0 0 0 817080 266910 550170 0 0 0 0 0 0 38496 2267 40433 204016 207337 207337 1 WSLLQQQK KVRFLEQQNKMLETKWSLLQQQKTARSNMD NKMLETKWSLLQQQKTARSNMDNMFESYIN K W S Q K T 0 0 0 0 0 3 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 8 0 1029.5607 P05787;CON__P05787;F8VUG2;F8W1U3;CON__H-INV:HIT000292931;F8VP67;CON__Q9H552 P05787 123 130 KRT8 Keratin, type II cytoskeletal 8 no no 2 0.0022895 111.28 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 3 1.5 1.4814 31.593 8 Median 1.0824 0.99388 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4629 1.4 15.543 2 0 Median 2.7458 2.3311 NaN 1 0 Median 1.3837 1.4135 NaN 1 0 Median 2.8411 2.3015 38.25 3 0 Plateau 285020000 102760000 182270000 51397000 24675000 26722000 0 0 0 77093000 33105000 43987000 5233100 1431600 3801500 23800000 8833900 14966000 127500000 34709000 92790000 + 38497 750;792 40434 204017;204018;204019;204020;204021;204022;204023;204024;204025 207338;207339;207340;207341;207342;207343;207344;207345;207346 207342 9 WSLQSEAHR GPDCRFLIVAHDDGRWSLQSEAHRRYFGGT AHDDGRWSLQSEAHRRYFGGTEDRLSCFAQ R W S H R R 1 1 0 0 0 1 1 0 1 0 1 0 0 0 0 2 0 1 0 0 0 0 9 0 1112.5363 Q16658 Q16658 101 109 FSCN1 Fascin yes yes 2 9.8264E-05 147.04 By MS/MS By MS/MS By MS/MS 1 1 1 0.97117 0.9247 12.279 3 Median 0.97117 0.9247 NaN 1 0 Median 1.2078 1.0157 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92822 0.79621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29831000 14132000 15699000 13612000 7070800 6541700 13249000 5547100 7701800 0 0 0 2969300 1513700 1455600 0 0 0 0 0 0 38498 2993 40435 204026;204027;204028 207347;207348;207349;207350;207351;207352 207349 6 WSLQSEAHRR GPDCRFLIVAHDDGRWSLQSEAHRRYFGGT HDDGRWSLQSEAHRRYFGGTEDRLSCFAQT R W S R R Y 1 2 0 0 0 1 1 0 1 0 1 0 0 0 0 2 0 1 0 0 0 0 10 1 1268.6374 Q16658 Q16658 101 110 FSCN1 Fascin yes yes 3 0.011214 28.958 By MS/MS 1 1.3656 1.3791 NaN 1 Median 1.3656 1.3791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7442000 2818400 4623600 7442000 2818400 4623600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38499 2993 40436 204029 207353 207353 1 WSLSQAVTGLIDTGR KDEKFFENYNQSLEKWSLSQAVTGLIDTGR WSLSQAVTGLIDTGRISEAETLCTKNLKSN K W S G R I 1 1 0 1 0 1 0 2 0 1 2 0 0 0 0 2 2 1 0 1 0 0 15 0 1602.8366 Q6PGP7 Q6PGP7 1327 1341 TTC37 Tetratricopeptide repeat protein 37 yes yes 2 0.059204 22.198 By MS/MS By matching By matching 1 1 1 1.1353 1.1399 5.7572 3 Median 1.1353 1.1399 NaN 1 0 Median 1.3888 1.2333 NaN 1 0 Median 1.0379 1.1025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1726300 807200 919140 1219800 562290 657520 293330 127070 166260 213200 117850 95358 0 0 0 0 0 0 0 0 0 38500 3169 40437 204030;204031;204032 207354 207354 1 WSMPELAEVEENKK LIRKKVQEFEHVNGRWSMPELAEVEENKKM RWSMPELAEVEENKKMSQPGSPSPKTPTPS R W S K K M 1 0 1 0 0 0 4 0 0 0 1 2 1 0 1 1 0 1 0 1 0 0 14 1 1688.808 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1516 1529 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 3 0.0071716 26.148 By MS/MS By matching 1 1 1.0619 1.0999 11.86 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0344 1.1962 NaN 1 0 Median 1.0902 1.0115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8660700 4766000 3894700 0 0 0 0 0 0 8538600 4691600 3847000 122150 74426 47729 0 0 0 0 0 0 38501 246 40438 204033;204034 207355 207355 1 WSNAGELMELIR RETLGLLRQIITDHRWSNAGELMELIRREG DHRWSNAGELMELIRREGRRMTAAQPSETT R W S I R R 1 1 1 0 0 0 2 1 0 1 2 0 1 0 0 1 0 1 0 0 0 0 12 0 1417.7024 P49770;H0YJJ8;G3V5E5 P49770 51 62 EIF2B2 Translation initiation factor eIF-2B subunit beta yes no 2 0.0014524 52.79 By MS/MS By matching 1 1 1.1105 0.95054 8.938 2 Median NaN NaN NaN 0 0 Median 1.0348 0.89232 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1918 1.0126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2898300 1249600 1648700 0 0 0 2785800 1199400 1586400 0 0 0 112500 50126 62378 0 0 0 0 0 0 38502 2398 40439 204035;204036 207356 207356 1 WSPALQIR VDKLGRICLDILKDKWSPALQIRTVLLSIQ LDILKDKWSPALQIRTVLLSIQALLSAPNP K W S I R T 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 8 0 969.5396 P61088;F8VQQ8;Q5JXB2 P61088 95 102 UBE2N;UBE2NL Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like yes no 2 0.0047788 79.597 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 3 2 7 4 1.0234 0.93791 20.507 18 Median 1.0285 0.99524 NaN 1 1 Median 1.0798 0.89521 NaN 1 0 Median 1.0183 1.0297 30.404 3 0 Median 1.5193 1.1739 27.123 2 0 Median 0.84081 0.88224 6.0084 7 0 Median 1.2969 1.0373 26.496 4 0 Median 2160300000 1134400000 1025900000 13735000 7018300 6717100 8542500 3961600 4581000 27187000 13369000 13819000 1694000 679560 1014500 1542200000 841780000 700420000 566960000 267620000 299330000 38503 2544 40440 204037;204038;204039;204040;204041;204042;204043;204044;204045;204046;204047;204048;204049;204050;204051;204052;204053;204054 207357;207358;207359;207360 207359 4 WSPIASTLPELVQR DTQSKVHQLYETIQRWSPIASTLPELVQRL RWSPIASTLPELVQRLVTIKQLHEQAMQFG R W S Q R L 1 1 0 0 0 1 1 0 0 1 2 0 0 0 2 2 1 1 0 1 0 0 14 0 1595.8671 Q13561;H0YI98 Q13561 319 332 DCTN2 Dynactin subunit 2 yes no 2 0.00018717 78.653 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.71168 0.65713 59.232 6 Median 0.76051 0.72509 NaN 1 0 Median 0.74744 0.63509 NaN 1 1 Median 0.67763 0.67994 NaN 1 0 Median 1.0045 0.87618 NaN 1 0 Median 0.56984 0.57324 NaN 1 0 Median 0.1846 0.1689 NaN 1 0 Median 24801000 14024000 10776000 12490000 6708100 5781800 4325500 2349500 1976000 5246500 2992500 2254000 840450 426880 413570 831530 526720 304810 1066600 1020600 46032 38504 2824 40441 204055;204056;204057;204058;204059;204060 207361;207362;207363;207364 207361 4 WSQLLANSAAR QSKAIEARHASLMKRWSQLLANSAARKKKL LMKRWSQLLANSAARKKKLLEAQSHFRKVE R W S A R K 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 1 0 0 0 0 11 0 1215.636 A0A0D9SF54;Q13813 Q13813 2065 2075 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2 7.7278E-15 185.6 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1.0521 0.94699 16.311 5 Median 1.2885 1.2094 NaN 1 0 Median 1.1851 0.94699 NaN 1 0 Median 0.98016 1.0685 NaN 1 0 Median 1.001 0.85171 11.917 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 119100000 54903000 64197000 10775000 4320100 6454800 39274000 18312000 20962000 62116000 28836000 33280000 6935300 3434500 3500800 0 0 0 0 0 0 38505 264;2838 40442 204061;204062;204063;204064;204065;204066 207365;207366;207367;207368;207369;207370;207371;207372 207366 8 WSTLVEDYGMELR YKDLLKLFTTMELMRWSTLVEDYGMELRKG MRWSTLVEDYGMELRKGSLESPATDVFGST R W S L R K 0 1 0 1 0 0 2 1 0 0 2 0 1 0 0 1 1 1 1 1 0 0 13 0 1597.7446 O00232 O00232 317 329 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.012278 51.927 By MS/MS 1 0.6137 0.61595 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6137 0.61595 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4114200 2958500 1155700 0 0 0 0 0 0 4114200 2958500 1155700 0 0 0 0 0 0 0 0 0 38506 1449 40443 204067 207373 207373 1 WSVHIAMHPQVNIYSVTR DRLSCFAQTVSPAEKWSVHIAMHPQVNIYS HIAMHPQVNIYSVTRKRYAHLSARPADEIA K W S T R K 1 1 1 0 0 1 0 0 2 2 0 0 1 0 1 2 1 1 1 3 0 0 18 0 2137.0891 Q16658 Q16658 132 149 FSCN1 Fascin yes yes 3 1.4789E-06 70.942 By MS/MS 1 1.0557 0.88785 NaN 1 Median NaN NaN NaN 0 0 Median 1.0557 0.88785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12713000 6670800 6042200 0 0 0 12713000 6670800 6042200 0 0 0 0 0 0 0 0 0 0 0 0 38507 2993 40444 204068 207374;207375 207375 2 WSYEMFR NNGIAAVKCMRSIRRWSYEMFRNERAIRFV KCMRSIRRWSYEMFRNERAIRFVVMVTPED R W S F R N 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 7 0 1017.4378 Q13085;A0A087X0W4 Q13085 140 146 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 2 0.038702 45.718 By MS/MS By matching 2 1 1.0118 1.0051 16.791 3 Median 0.97079 0.97289 4.6064 2 0 Median 1.4546 1.2941 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2638800 1394800 1244000 2444100 1312200 1131900 194740 82637 112110 0 0 0 0 0 0 0 0 0 0 0 0 38508 2784 40445 204069;204070;204071 207376;207377 207377 2 WTAIVDK TTCIHHIIKHDYPSRWTAIVDKIGFYLQSD IKHDYPSRWTAIVDKIGFYLQSDNSACWLG R W T D K I 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 7 0 831.44905 O95373;E9PLB2 O95373 126 132 IPO7 Importin-7 yes no 2 0.059628 48.561 By MS/MS 1 1.1933 1.0152 NaN 1 Median NaN NaN NaN 0 0 Median 1.1933 1.0152 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5780200 2101100 3679100 0 0 0 5780200 2101100 3679100 0 0 0 0 0 0 0 0 0 0 0 0 38509 1768 40446 204072 207378 207378 1 WTDENIDTVALK LRLFQDRLVEDEERRWTDENIDTVALKHFP ERRWTDENIDTVALKHFPNIDREKAMSRPI R W T L K H 1 0 1 2 0 0 1 0 0 1 1 1 0 0 0 0 2 1 0 1 0 0 12 0 1403.6933 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2845 2856 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00063531 63.624 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 2 1.1824 1.1294 51.629 7 Median 0.92795 0.93222 NaN 1 1 Median 1.2652 1.1294 NaN 1 0 Median 1.4942 1.5906 NaN 1 0 Median 1.7393 1.634 48.49 2 0 Median NaN NaN NaN 0 0 Median 0.71342 0.61024 44.281 2 0 Median 152720000 69665000 83051000 68542000 33255000 35287000 32050000 14491000 17559000 45979000 19007000 26972000 5726600 2673600 3053000 0 0 0 418340 239260 179080 38510 2865 40447 204073;204074;204075;204076;204077;204078;204079 207379;207380;207381;207382;207383;207384 207384 6 WTETEIEMLR MQLHPVADSSPAGAKWTETEIEMLRAAVKR PAGAKWTETEIEMLRAAVKRFGDDLNHISC K W T L R A 0 1 0 0 0 0 3 0 0 1 1 0 1 0 0 0 2 1 0 0 0 0 10 0 1306.6227 F8W038;Q8IXM2;H0YIS7;F8W1H0 F8W038 42 51 C17orf49;BAP18;RNASEK-C17orf49 Chromatin complexes subunit BAP18 yes no 2 0.0014621 65.305 By matching By matching By MS/MS By matching By matching 1 1 1 1 2 1.2975 1.0631 25.007 6 Median 0.71577 0.67213 NaN 1 0 Median 1.2963 1.1042 NaN 1 0 Median 0.93453 0.89713 NaN 1 0 Median 1.7447 1.4145 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3281 1.0721 6.5492 2 0 Median 8178200 4240800 3937400 906760 491670 415090 237650 82038 155610 6651000 3487500 3163500 89232 34044 55187 0 0 0 293520 145560 147960 38511 1079 40448 204080;204081;204082;204083;204084;204085 207385;207386 207386 2 WTETYVR WNDVKDPVSIEERARWTETYVRWSPKGTYL VSIEERARWTETYVRWSPKGTYLATFHQRG R W T V R W 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 7 0 953.46068 P55884;C9JZG1;C9JQN7 P55884 335 341 EIF3B Eukaryotic translation initiation factor 3 subunit B yes no 2 0.0054115 97.071 By MS/MS By MS/MS By matching 1 3 1 1.2902 1.127 16.871 5 Median 1.3489 1.3043 NaN 1 0 Median 1.2902 1.127 4.8769 3 0 Median NaN NaN NaN 0 0 Median 0.97382 0.8315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18135000 7645500 10489000 5219800 2284400 2935300 12015000 4914800 7100500 0 0 0 899630 446230 453400 0 0 0 0 0 0 38512 2504 40449 204086;204087;204088;204089;204090 207387;207388;207389;207390 207389 4 WTEYGLTFTEK TETTKVTGSLETKYRWTEYGLTFTEKWNTD TKYRWTEYGLTFTEKWNTDNTLGTEITVED R W T E K W 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 3 1 1 0 0 0 11 0 1373.6503 P21796;C9JI87 P21796 64 74 VDAC1 Voltage-dependent anion-selective channel protein 1 yes no 2 0.0024031 53.683 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0768 0.96033 24.563 5 Median 0.83483 0.76613 37.318 2 0 Median 1.3297 1.116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94009 0.96033 NaN 1 0 Median 1.0768 0.87792 NaN 1 0 Median 90069000 43155000 46914000 66102000 31853000 34249000 17310000 7927200 9383100 0 0 0 0 0 0 2461600 1580800 880750 4195400 1794400 2401000 38513 2092 40450 204091;204092;204093;204094;204095 207391;207392;207393;207394 207394 4 WTGMIIGPPR VSWGLEDDEDMTLTRWTGMIIGPPRTNYEN MTLTRWTGMIIGPPRTNYENRIYSLKVECG R W T P R T 0 1 0 0 0 0 0 2 0 2 0 0 1 0 2 0 1 1 0 0 0 0 10 0 1126.5957 Q13404;I3L0A0;G3V2F7;E5RIF1;D6RG00;Q15819;G3V113;H0YBX6 Q15819 46 55 UBE2V1;TMEM189-UBE2V1;UBE2V2 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 no no 2 2.8076E-05 143.89 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.009 0.90425 3.4763 5 Median 1.009 0.9542 NaN 1 0 Median 1.1144 0.9239 NaN 1 0 Median 0.87128 0.88268 2.147 2 1 Median 1.1021 0.90425 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 84556000 43927000 40629000 53725000 28411000 25313000 8881600 4279200 4602500 21554000 11040000 10513000 395970 195990 199980 0 0 0 0 0 0 38514 2973;2809 40451;40452 204096;204097;204098;204099;204100 207395;207396;207397;207398;207399;207400;207401;207402;207403;207404;207405;207406 207397 1508 12 WTKPSSFSDSER TESHRVAGEDMLVWRWTKPSSFSDSER___ VWRWTKPSSFSDSER_______________ R W T E R - 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 4 1 1 0 0 0 0 12 1 1425.6525 Q8NC56;H0Y9B7 Q8NC56 492 503 LEMD2 LEM domain-containing protein 2 yes no 3 0.036871 20.427 By MS/MS 1 0.89351 0.92911 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89351 0.92911 NaN 1 0 Median NaN NaN NaN 0 0 Median 3222100 1696100 1526000 0 0 0 0 0 0 0 0 0 0 0 0 3222100 1696100 1526000 0 0 0 38515 3415 40453 204101 207407 207407 1 WTLLQEQGTK KVRFLEQQNKVLDTKWTLLQEQGTKTVRQN VLDTKWTLLQEQGTKTVRQNLEPLFEQYIN K W T T K T 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1202.6295 CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;CON__P48668;P48668 CON__P13647 200 209 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 1.5673E-26 176.79 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 4 4 2 0.1039 0.10657 78.074 14 Median 0.083668 0.081095 121.51 3 3 Median 0.037948 0.031068 NaN 1 1 Median 0.14321 0.1484 64.503 4 4 Median 0.10688 0.08734 40.923 4 4 Median 0.12145 0.12534 19.427 2 2 Median NaN NaN NaN 0 0 Median 163490000 140020000 23474000 45656000 43825000 1830900 7691600 7578100 113570 81137000 63048000 18089000 12322000 11348000 974660 16682000 14216000 2466000 0 0 0 + 38516 757;741;748;766 40454 204102;204103;204104;204105;204106;204107;204108;204109;204110;204111;204112;204113;204114;204115 207408;207409;207410;207411;207412;207413;207414;207415;207416;207417;207418;207419;207420;207421 207408 14 WTNQLNSLNQAVVSK DHQKRGGARYTALDKWTNQLNSLNQAVVSK WTNQLNSLNQAVVSKLA_____________ K W T S K L 1 0 3 0 0 2 0 0 0 0 2 1 0 0 0 2 1 1 0 2 0 0 15 0 1700.8846 P61201;B4DIH5 P61201 427 441 COPS2 COP9 signalosome complex subunit 2 yes no 2 0.0055041 35.006 By matching By MS/MS 1 1 1.1921 1.1144 14.685 2 Median NaN NaN NaN 0 0 Median 1.1224 1.0045 NaN 1 0 Median 1.266 1.2363 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7537800 3512000 4025800 0 0 0 398720 164650 234070 7139100 3347400 3791700 0 0 0 0 0 0 0 0 0 38517 2548 40455 204116;204117 207422;207423 207423 2 WTSQDSLLGMEFSGR MLATGKLSPDAIPGKWTSQDSLLGMEFSGR WTSQDSLLGMEFSGRDASGKRVMGLVPAKG K W T G R D 0 1 0 1 0 1 1 2 0 0 2 0 1 1 0 3 1 1 0 0 0 0 15 0 1712.7828 P49327;A0A0U1RQF0 P49327 1592 1606 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 2.1519E-09 102.66 By MS/MS By MS/MS By MS/MS 4 3 1 1.1136 1.0515 12.824 8 Median 1.0689 1.0237 9.6574 4 1 Median 1.4302 1.2116 10.918 3 0 Plateau 1.1459 1.2733 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74588000 35069000 39520000 59196000 28867000 30330000 12863000 4958600 7904600 2528900 1243200 1285600 0 0 0 0 0 0 0 0 0 38518 2377 40456;40457 204118;204119;204120;204121;204122;204123;204124;204125 207424;207425;207426;207427;207428;207429;207430;207431;207432;207433;207434;207435 207424 1094 12 WTTLNSLQLHGLQLR SGDGTMRKNIDVWKKWTTLNSLQLHGLQLR WTTLNSLQLHGLQLRIATRGAEQLAEGGRM K W T L R I 0 1 1 0 0 2 0 1 1 0 5 0 0 0 0 1 2 1 0 0 0 0 15 0 1778.9792 Q08J23 Q08J23 287 301 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2;3 8.5078E-08 97.551 By matching By MS/MS By matching 2 3 1 1.2589 1.1121 13.597 6 Median 1.3925 1.3838 13.706 2 0 Median 1.2511 1.0819 2.4371 3 1 Median 1.0233 1.0978 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32230000 14201000 18030000 3169900 1431700 1738200 27663000 11995000 15668000 1397400 773560 623860 0 0 0 0 0 0 0 0 0 38519 2745 40458 204126;204127;204128;204129;204130;204131 207436;207437;207438;207439 207436 4 WTTSQLLQHPFVTVDSNKPIR KDFLKKCLEKNVDARWTTSQLLQHPFVTVD LQHPFVTVDSNKPIRELIAEAKAEVTEEVE R W T I R E 0 1 1 1 0 2 0 0 1 1 2 1 0 1 2 2 3 1 0 2 0 0 21 1 2466.3019 Q9H2G2 Q9H2G2 281 301 SLK STE20-like serine/threonine-protein kinase yes yes 4 0.0084792 28.505 By MS/MS 1 0.84641 0.85143 NaN 1 Median 0.84641 0.85143 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9091300 5275500 3815800 9091300 5275500 3815800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38520 3942 40459 204132 207440 207440 1 WVCSSLR AFVSTLTRGDLSSIRWVCSSLRHAQPTCPG RGDLSSIRWVCSSLRHAQPTCPGAQLCTVY R W V L R H 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 2 0 1 0 1 0 0 7 0 906.43817 P49327;A0A0U1RQF0 P49327 1546 1552 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.0080733 86.866 By MS/MS 2 1.3912 1.1612 12.691 2 Median NaN NaN NaN 0 0 Median 1.3912 1.1612 12.691 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12777000 4639300 8137800 0 0 0 12777000 4639300 8137800 0 0 0 0 0 0 0 0 0 0 0 0 38521 2377 40460 204133;204134 207441;207442 207442 2 WVDSNVPQIIR ARCLILWDDILPNSKWVDSNVPQIIRENSI PNSKWVDSNVPQIIRENSISLSEIELPCSE K W V I R E 0 1 1 1 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 2 0 0 11 0 1325.7092 Q9H1A4;H0Y564 Q9H1A4 1425 1435 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.0022965 77.677 By MS/MS By MS/MS 1 1 1.2728 1.2488 11.054 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.236 1.3503 NaN 1 1 Median 1.3108 1.1549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10859000 4451600 6407700 0 0 0 0 0 0 10123000 4149800 5972900 736570 301810 434760 0 0 0 0 0 0 38522 3933 40461 204135;204136 207443;207444 207443 2 WVEISNEVR KVAFKDFSGDMCKLKWVEISNEVRKFRTLT DMCKLKWVEISNEVRKFRTLTELILDAQEH K W V V R K 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 2 0 0 9 0 1130.572 P17480;E9PKP7 P17480 72 80 UBTF Nucleolar transcription factor 1 yes no 2 0.046568 31.934 By matching By MS/MS 1 1 0.98973 0.91976 9.9728 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93044 0.98697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0528 0.85714 NaN 1 0 Median 14999000 9067800 5930800 0 0 0 0 0 0 13559000 8448700 5110200 0 0 0 0 0 0 1439600 619040 820600 38523 2040 40462 204137;204138 207445 207445 1 WVELTDKLNSR STSQVQKELQSINQKWVELTDKLNSRSSQI INQKWVELTDKLNSRSSQIDQAIVKSTQYQ K W V S R S 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 1 1 1 0 1 0 0 11 1 1359.7147 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390 H3BPE1 4664 4674 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 3 6.1691E-05 98.754 By MS/MS By matching By matching 1 1 1 1.1082 1.2819 21.009 3 Median 1.0931 1.1349 NaN 1 0 Median 1.8073 1.7087 NaN 1 0 Median 1.1082 1.2819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17419000 7477600 9940900 10923000 4856100 6066800 3087100 1263100 1824000 3408600 1358400 2050100 0 0 0 0 0 0 0 0 0 38524 1220 40463 204139;204140;204141 207446;207447 207447 2 WVFKEEGVLR YSQTGNYELAVALSRWVFKEEGVLRVGPVS VALSRWVFKEEGVLRVGPVSHHRVGETAPP R W V L R V 0 1 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 1 0 2 0 0 10 1 1261.6819 P39656;A0A0C4DGS1 P39656 298 307 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2;3 0.0012985 54.539 By MS/MS By matching By MS/MS By matching 2 1 2 2 1.2169 1.2059 19.338 7 Median 1.212 1.2985 10.462 2 0 Median 1.7256 1.616 NaN 1 0 Median 1.1068 1.2594 13.466 2 0 Median 1.1376 1.0018 17.225 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33912000 14911000 19001000 10932000 5271400 5660800 2443200 845380 1597800 19068000 8326500 10741000 1469100 467900 1001200 0 0 0 0 0 0 38525 253 40464 204142;204143;204144;204145;204146;204147;204148 207448;207449;207450;207451;207452 207449 5 WVGGPEIELIAIATGGR EANHLLLQNNLPAVRWVGGPEIELIAIATG GGPEIELIAIATGGRIVPRFSELTAEKLGF R W V G R I 2 1 0 0 0 0 2 4 0 3 1 0 0 0 1 0 1 1 0 1 0 0 17 0 1737.9414 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 324 340 CCT5 T-complex protein 1 subunit epsilon yes no 2 9.3121E-14 112.51 By MS/MS By MS/MS By matching 1 2 1 0.99502 0.87542 7.6367 4 Median 1.0032 0.95115 NaN 1 0 Median 0.94771 0.8326 7.5345 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98689 0.8727 NaN 1 0 Median 23754000 11648000 12106000 13556000 6589000 6966900 10105000 5018100 5086700 0 0 0 0 0 0 0 0 0 93197 40861 52336 38526 2364 40465 204149;204150;204151;204152 207453;207454;207455;207456;207457 207455 5 WVGPLPVEATLAK AVAVSQENDEENEERWVGPLPVEATLAKKR ERWVGPLPVEATLAKKRKVLEFERVYLDNL R W V A K K 2 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 1 1 0 2 0 0 13 0 1379.7813 Q96BP3;D6RB19;D6RHV0;D6RA12;D6RDA4 Q96BP3 50 62 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 yes no 2 0.0044764 40.496 By matching By MS/MS By matching 1 1 2 0.7764 0.72793 29.443 4 Median NaN NaN NaN 0 0 Median 0.47942 0.41372 NaN 1 0 Median 0.74527 0.75258 NaN 1 0 Median 0.8514 0.73648 6.3591 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14993000 8425900 6566600 0 0 0 1288400 797480 490910 12429000 6950200 5478300 1275600 678240 597400 0 0 0 0 0 0 38527 3609 40466 204153;204154;204155;204156 207458 207458 1 WVGVILDEAK GTVAYVGATLFATGKWVGVILDEAKGKNDG FATGKWVGVILDEAKGKNDGTVQGRKYFTC K W V A K G 1 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 2 0 0 10 0 1128.6179 E7EX90;Q14203;Q6AWB1;C9J1B7;C9JZA4;C9JTE5;C9JJN7;C9JJD0;C9JKG6;E9PCY0 E7EX90 40 49 DCTN1;DKFZp686E0752 Dynactin subunit 1 yes no 2 0.0017405 62.823 By MS/MS By matching By matching 2 1 1 1.062 0.97728 13.725 4 Median 1.1387 1.1249 11.714 2 0 Median 1.0521 0.92232 NaN 1 0 Median 0.84143 0.90775 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13761000 6475900 7284600 9207500 4206300 5001200 2355200 1077800 1277400 2197900 1191800 1006100 0 0 0 0 0 0 0 0 0 38528 906 40467 204157;204158;204159;204160 207459 207459 1 WVHAEMVNK SATMLNASSSKEHVKWVHAEMVNKNSELKL SKEHVKWVHAEMVNKNSELKLIYVTPEKIA K W V N K N 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 2 0 0 9 0 1112.5437 P46063;F8WA66;F8WD97 P46063 172 180 RECQL ATP-dependent DNA helicase Q1 yes no 2 0.0038329 62.546 By MS/MS By MS/MS 1 1 0.9923 0.94484 11.047 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82119 0.87385 NaN 1 0 Median 1.1991 1.0216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6009300 3077600 2931800 0 0 0 0 0 0 3234600 1810400 1424200 2774700 1267200 1507600 0 0 0 0 0 0 38529 2337 40468 204161;204162 207460;207461;207462 207461 3 WVIYNDQK TMCGHYVCHIKKEGRWVIYNDQKVCASEKP HIKKEGRWVIYNDQKVCASEKPPKDLGYIY R W V Q K V 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 8 0 1064.5291 P45974 P45974 829 836 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 2 0.0035841 87.323 By MS/MS 1 1.0374 1.0216 NaN 1 Median 1.0374 1.0216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3686000 1849400 1836700 3686000 1849400 1836700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38530 2332 40469 204163 207463;207464 207463 2 WVNSHLAR LADEREAVQKKTFTKWVNSHLARVSCRITD QKKTFTKWVNSHLARVSCRITDLYTDLRDG K W V A R V 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 8 0 981.51445 Q01082;A0A087WUZ3;F8W6C1;O15020;A4QPE4;E9PJZ2;A0A494C1G7;P11277 Q01082 63 70 SPTBN1;SPTBN2;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2;Spectrin beta chain, erythrocytic no no 2 0.0074447 67.032 By matching By MS/MS By MS/MS 1 2 1 0.85988 0.91784 23.871 4 Median 0.61191 0.61195 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.85988 0.92757 14.168 2 0 Median 1.1401 1.0039 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7800100 3679100 4121000 824260 384700 439560 0 0 0 5824300 2757300 3066900 1151600 537030 614550 0 0 0 0 0 0 38531 2681;1512;1960 40470 204164;204165;204166;204167 207465;207466 207465 2 WVPAGGSTGFSR QARAAVMVYDDANKKWVPAGGSTGFSRVHI NKKWVPAGGSTGFSRVHIYHHTGNNTFRVV K W V S R V 1 1 0 0 0 0 0 3 0 0 0 0 0 1 1 2 1 1 0 1 0 0 12 0 1220.5938 A0A0U1RRM6;Q8N8S7;A0A075B6E5 A0A0U1RRM6 23 34 ENAH Protein enabled homolog yes no 2 0.00044384 78.556 By matching By MS/MS By MS/MS 1 2 1 2.7215 2.4615 68.387 4 Median 4.4227 4.7613 NaN 1 0 Median 2.829 2.4615 73.63 2 0 Median 1.2596 1.2819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27234000 8098100 19136000 10080000 1135400 8944800 5128000 1226000 3902000 12026000 5736700 6289300 0 0 0 0 0 0 0 0 0 38532 313 40471 204168;204169;204170;204171 207467;207468;207469 207468 3 WVPEITHHCPK FSVVSPSSFENVKEKWVPEITHHCPKTPFL VKEKWVPEITHHCPKTPFLLVGTQIDLRDD K W V P K T 0 0 0 0 1 0 1 0 2 1 0 1 0 0 2 0 1 1 0 1 0 0 11 0 1402.6816 P60953;A0A590UJK8;A0A494C1M1;Q5JYX0;A0A494BZX6 P60953 97 107 CDC42 Cell division control protein 42 homolog yes no 3 0.00048844 57.019 By matching By MS/MS 1 2 0.83911 0.81407 16.264 3 Median 0.83911 0.81407 NaN 1 0 Median 0.98214 0.83788 22.88 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6872600 3592900 3279700 1126200 589120 537090 5746300 3003800 2742600 0 0 0 0 0 0 0 0 0 0 0 0 38533 2532 40472 204172;204173;204174 207470;207471;207472;207473 207472 4 WVPLQIDMKPEVPR DCQRGGQKKKGNKHKWVPLQIDMKPEVPRE KWVPLQIDMKPEVPREKLASRPTRPPEPRH K W V P R E 0 1 0 1 0 1 1 0 0 1 1 1 1 0 3 0 0 1 0 2 0 0 14 1 1706.9178 Q6PKG0;A0A0B4J210;E5RH50;H0YBW1;E5RHK4;H0YAN4 Q6PKG0 252 265 LARP1 La-related protein 1 yes no 3 0.00097915 39.509 By MS/MS By matching 1 1 0.86941 0.83145 13.677 2 Median 0.8825 0.91588 NaN 1 0 Median 0.85652 0.7548 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2620800 1252200 1368600 2391100 1133500 1257700 229690 118760 110940 0 0 0 0 0 0 0 0 0 0 0 0 38534 3176 40473 204175;204176 207474 207474 1 WVTTASLLDYDTVAGADK NENQLIIFADDTYPRWVTTASLLDYDTVAG TASLLDYDTVAGADKFGNICVVRLPPNTND R W V D K F 3 0 0 3 0 0 0 1 0 0 2 1 0 0 0 1 3 1 1 2 0 0 18 0 1924.9418 Q15393 Q15393 1032 1049 SF3B3 Splicing factor 3B subunit 3 yes yes 2 1.0062E-05 54.7 By MS/MS By matching By MS/MS By matching 1 2 3 1 0.97745 1.0023 10.593 7 Median 0.8628 0.85578 NaN 1 0 Median 1.0564 0.92063 12.027 2 0 Median 0.99238 1.083 10.419 3 1 Plateau 1.226 1.0404 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11817000 5876600 5940300 2860800 1573900 1286900 2069800 931830 1137900 6421500 3156700 3264800 464830 214140 250690 0 0 0 0 0 0 38535 2946 40474 204177;204178;204179;204180;204181;204182;204183 207475;207476;207477;207478;207479 207476 5 WVTVGDTSLR KVMATIEKVRRWEKRWVTVGDTSLRIFKWV RWEKRWVTVGDTSLRIFKWVPVVDPQEEER R W V L R I 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 2 1 0 2 0 0 10 0 1132.5877 F2Z3H6;Q9BQE9;F8WE18;F8WDZ4;Q4VC05;I3L4D5;I3L1Q2;Q8WUZ0 I3L1Q2 35 44 BCL7B;BCL7A;BCL7C B-cell CLL/lymphoma 7 protein family member B;B-cell CLL/lymphoma 7 protein family member A;B-cell CLL/lymphoma 7 protein family member C no no 2 0.00038325 91.318 By matching By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1066 1.1628 16.109 5 Median NaN NaN NaN 0 0 Median 1.1066 0.94207 NaN 1 0 Median 1.006 1.0376 17.866 2 0 Median 1.3548 1.1628 NaN 1 0 Median 1.2447 1.3369 NaN 1 0 Median NaN NaN NaN 0 0 Median 24620000 11150000 13471000 0 0 0 2692300 1144800 1547500 15468000 7313100 8154600 3970200 1596300 2373900 2490200 1095700 1394500 0 0 0 38536 994;1278 40475 204184;204185;204186;204187;204188 207480;207481;207482;207483 207483 4 WVVIGDENYGEGSSR PVPDTARYYKKHGIRWVVIGDENYGEGSSR WVVIGDENYGEGSSREHAALEPRHLGGRAI R W V S R E 0 1 1 1 0 0 2 3 0 1 0 0 0 0 0 2 0 1 1 2 0 0 15 0 1666.7587 A2A274;Q99798 A2A274 682 696 ACO2 Aconitate hydratase, mitochondrial yes no 2 2.3828E-10 112.15 By MS/MS By matching 1 1 1.3487 1.2226 16.723 2 Median 1.148 1.0863 NaN 1 0 Median 1.5844 1.3761 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12236000 5806200 6429700 10008000 4937700 5070100 2228100 868520 1359600 0 0 0 0 0 0 0 0 0 0 0 0 38537 495 40476 204189;204190 207484;207485 207484 2 WVVPVLPK HTDLAKLDDMINRPRWVVPVLPKGELEVLL DMINRPRWVVPVLPKGELEVLLEAAIDLSK R W V P K G 0 0 0 0 0 0 0 0 0 0 1 1 0 0 2 0 0 1 0 3 0 0 8 0 936.57967 Q93008;O00507 Q93008 84 91 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.060654 32.47 By MS/MS By matching By matching 1 2 1 0.86898 0.85351 13.223 4 Median 0.75464 0.72491 NaN 1 0 Median 0.95532 0.85351 13.017 2 0 Median 0.85332 0.94266 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4617800 2509700 2108100 3168100 1745300 1422800 1032800 530180 502640 416940 234290 182650 0 0 0 0 0 0 0 0 0 38538 3573 40477 204191;204192;204193;204194 207486;207487 207486 2 WVYGPGGAR TDLQRLQARVEELERWVYGPGGARGSRKVA VEELERWVYGPGGARGSRKVADGLVKVQVA R W V A R G 1 1 0 0 0 0 0 3 0 0 0 0 0 0 1 0 0 1 1 1 0 0 9 0 961.477 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 20 28 DCTN3 Dynactin subunit 3 yes no 2 0.013129 45.718 By MS/MS By matching 1 1 0.92254 0.8165 18.358 2 Median NaN NaN NaN 0 0 Median 1.1203 0.92968 NaN 1 0 Median 0.75972 0.7171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4902000 2311100 2590900 0 0 0 2700800 1220000 1480800 2201200 1091000 1110100 0 0 0 0 0 0 0 0 0 38539 1708 40478 204195;204196 207488 207488 1 WWEEERYPEGIK NKKKKPKKEEEQKWKWWEEERYPEGIKWKF KWKWWEEERYPEGIKWKFLEHKGPVFAPPY K W W I K W 0 1 0 0 0 0 4 1 0 1 0 1 0 0 1 0 0 2 1 0 0 0 12 1 1620.7573 P11387 P11387 205 216 TOP1 DNA topoisomerase 1 yes yes 3 0.0080154 30.563 By MS/MS By matching 2 1 1.1711 1.12 17.151 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0216 1.0623 7.4852 2 0 Median 1.4919 1.4092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50890000 24165000 26725000 0 0 0 0 0 0 48179000 23049000 25131000 2710200 1116300 1593900 0 0 0 0 0 0 38540 1962 40479 204197;204198;204199 207489;207490 207490 2 WYDLEYSNEYSLKPQPQDVVSK EFFERQTLLLRPGGKWYDLEYSNEYSLKPQ NEYSLKPQPQDVVSKYKTLAQKLYQHEINL K W Y S K Y 0 0 1 2 0 2 2 0 0 0 2 2 0 0 2 3 0 1 3 2 0 0 22 1 2687.2755 Q03701 Q03701 183 204 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.001279 26.417 By MS/MS By matching 2 1 0.79654 0.91101 12.378 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73128 0.83981 11.509 2 0 Median 1.0362 0.98705 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9941900 5254600 4687200 0 0 0 0 0 0 9585900 5082600 4503300 355980 172080 183900 0 0 0 0 0 0 38541 2710 40480 204200;204201;204202 207491 207491 1 WYENFQR PSPSEMFIPANVVLKWYENFQRRLAQNPLF IPANVVLKWYENFQRRLAQNPLFWKT____ K W Y Q R R 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 7 0 1041.4668 Q53FT3;A0A087WYW7 Q53FT3 180 186 C11orf73 Protein Hikeshi yes no 2 0.029887 50.039 By matching By MS/MS 1 1 1.0717 0.97373 4.6196 2 Median 0.94694 0.94243 NaN 1 0 Median 1.2129 1.0061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6097300 2802600 3294700 1444200 641090 803150 4653000 2161500 2491500 0 0 0 0 0 0 0 0 0 0 0 0 38542 3028 40481 204203;204204 207492 207492 1 WYEWLDPSIK ASLLHRKSAKQCKARWYEWLDPSIKKTEWS QCKARWYEWLDPSIKKTEWSREEEEKLLHL R W Y I K K 0 0 0 1 0 0 1 0 0 1 1 1 0 0 1 1 0 2 1 0 0 0 10 0 1335.6499 Q99459 Q99459 50 59 CDC5L Cell division cycle 5-like protein yes yes 2 0.044206 29.81 By MS/MS By matching 1 1 0.88092 0.87233 6.9092 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82939 0.916 NaN 1 0 Median 0.93566 0.83073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4748000 2581500 2166500 0 0 0 0 0 0 4669400 2538700 2130600 78635 42802 35833 0 0 0 0 0 0 38543 3745 40482 204205;204206 207493;207494 207494 2 WYLENVYPELR SRLELRKKLSCKPFKWYLENVYPELRVPDH KPFKWYLENVYPELRVPDHQDIAFGALQQG K W Y L R V 0 1 1 0 0 0 2 0 0 0 2 0 0 0 1 0 0 1 2 1 0 0 11 0 1480.7351 Q10471 Q10471 428 438 GALNT2 Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form yes yes 2 0.033047 47.603 By MS/MS 1 0.82723 0.8391 NaN 1 Median 0.82723 0.8391 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1480000 876860 603100 1480000 876860 603100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38544 2751 40483 204207 207495 207495 1 WYQMGAYQPFFR VGGFFKNPEPELLVRWYQMGAYQPFFRAHA LVRWYQMGAYQPFFRAHAHLDTGRREPWLL R W Y F R A 1 1 0 0 0 2 0 1 0 0 0 0 1 2 1 0 0 1 2 0 0 0 12 0 1592.7235 E9PKU7;Q14697;F5H6X6 Q14697 663 674 GANAB Neutral alpha-glucosidase AB no no 2 7.1003E-06 120.07 By MS/MS By MS/MS By matching 3 3 2 0.99083 0.94278 61.167 8 Median 0.92566 0.88953 16.138 3 0 Median 1.1943 1.0512 5.6346 3 0 Median 0.33413 0.36781 105.25 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 64346000 34278000 30068000 54253000 29050000 25204000 7978200 3654600 4323700 2114100 1573900 540240 0 0 0 0 0 0 0 0 0 38545 2896;951 40484;40485 204208;204209;204210;204211;204212;204213;204214;204215 207496;207497;207498;207499;207500;207501;207502;207503;207504 207499 336 9 WYQVEGMEWLR VPFQQPKHFTGGVMRWYQVEGMEWLRMLWE GVMRWYQVEGMEWLRMLWENGINGILADEM R W Y L R M 0 1 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 2 1 1 0 0 11 0 1495.6918 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 101 111 HELLS Lymphoid-specific helicase yes no 2 0.005015 46.891 By MS/MS 1 0.66277 0.70995 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66277 0.70995 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2532600 1520200 1012400 0 0 0 0 0 0 2532600 1520200 1012400 0 0 0 0 0 0 0 0 0 38546 211 40486 204216 207505;207506 207506 2 WYVVQTNYDR KESLDVYELDAKQGRWYVVQTNYDRWKHPF AKQGRWYVVQTNYDRWKHPFFLDDRRTPAK R W Y D R W 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 2 2 0 0 10 0 1342.6306 Q13510;A0A1B0GTP7;A0A1B0GUH5;A0A1B0GTZ5;A0A1B0GTM3;A0A1B0GUA4;A0A1B0GW68;E7EMM4;A0A1B0GUW4;A0A1B0GUG1;A0A1B0GUE3;A0A1B0GV06 Q13510 314 323 ASAH1 Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta yes no 2 2.0222E-07 135.79 By MS/MS 1 1.1184 1.1088 NaN 1 Median 1.1184 1.1088 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5287300 2530200 2757200 5287300 2530200 2757200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38547 319 40487 204217 207507 207507 1 WYYNAAGFNK QAVSASGKWLDGIRKWYYNAAGFNKLGLMR DGIRKWYYNAAGFNKLGLMRDDTIYEDEDV K W Y N K L 2 0 2 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 2 0 0 0 10 0 1232.5615 P14927;B7Z2R2 P14927 20 29 UQCRB Cytochrome b-c1 complex subunit 7 yes no 2 0.0004171 122.13 By MS/MS By MS/MS By MS/MS 1 1 1 1.2146 1.0952 18.22 3 Median 1.2146 1.0952 NaN 1 0 Median 1.7311 1.4244 NaN 1 0 Median 1.031 1.0037 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67229000 28929000 38299000 48187000 21685000 26501000 15109000 5300000 9808900 3933000 1944100 1988900 0 0 0 0 0 0 0 0 0 38548 630 40488 204218;204219;204220 207508;207509;207510;207511 207509 4 YAAELHLVHWNTK SLDGQGSEHTVDKKKYAAELHLVHWNTKYG KKYAAELHLVHWNTKYGDFGKAVQQPDGLA K Y A T K Y 2 0 1 0 0 0 1 0 2 0 2 1 0 0 0 0 1 1 1 1 0 0 13 0 1580.81 P00918 P00918 114 126 CA2 Carbonic anhydrase 2 yes yes 3 0.0059667 47.532 By MS/MS By MS/MS By matching 2 1 1 1.2206 1.1085 31.048 3 Median 1.2206 1.1085 NaN 1 1 Median 1.8565 1.5661 NaN 1 0 Median 0.88039 0.84283 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27367000 10128000 17240000 22610000 8329500 14281000 3326300 1157900 2168500 1430400 640140 790290 0 0 0 0 0 0 0 0 0 38549 1827 40489 204221;204222;204223;204224 207512;207513;207514;207515 207513 4 YAALVVEPTSDGNYVTK IDGVFKSLLLLKKKKYAALVVEPTSDGNYV ALVVEPTSDGNYVTKQELKGLDIVRRDWCD K Y A T K Q 2 0 1 1 0 0 1 1 0 0 1 1 0 0 1 1 2 0 2 3 0 0 17 0 1825.9098 A0A087WU64;A6NMQ1;P09884 A0A087WU64 1054 1070 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 4.6064E-12 127.37 By MS/MS By MS/MS By matching By matching 1 3 2 1 0.93198 0.84719 22.493 7 Median 0.81871 0.78709 NaN 1 0 Median 1.0392 0.89427 25.183 3 0 Median 0.69506 0.77967 29.635 2 0 Median 0.93198 0.84719 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34316000 18033000 16283000 23457000 12152000 11305000 5773700 2848000 2925700 4306200 2547800 1758500 778790 485260 293530 0 0 0 0 0 0 38550 26 40490 204225;204226;204227;204228;204229;204230;204231 207516;207517;207518;207519 207517 4 YAALYQPLFDK IEAKFYEEVHDLERKYAALYQPLFDKRREF LERKYAALYQPLFDKRREFITGDVEPTDAE K Y A D K R 2 0 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 0 0 0 11 0 1327.6812 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8 Q99733 95 105 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 2 0.00067565 89.247 By MS/MS By MS/MS By matching By matching 2 1 1 1 0.92511 0.89391 53.497 5 Median 0.53753 0.54714 89.294 2 1 Median NaN NaN NaN 0 0 Median 1.0445 1.0586 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92511 0.89391 NaN 1 0 Median 0.80749 0.69385 NaN 1 0 Median 20724000 12090000 8633500 15954000 9920900 6032900 0 0 0 3996000 1734100 2261900 0 0 0 615570 349980 265600 158550 85435 73112 38551 3766 40491 204232;204233;204234;204235;204236 207520;207521 207520 2 YAALYQPLFDKR IEAKFYEEVHDLERKYAALYQPLFDKRREF ERKYAALYQPLFDKRREFITGDVEPTDAES K Y A K R R 2 1 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 0 0 0 12 1 1483.7823 Q99733;C9J6D1;C9JZI7;E9PNW0;E9PJJ2;E9PS34;E9PNJ7;A8MXH2;E9PKT8 Q99733 95 106 NAP1L4 Nucleosome assembly protein 1-like 4 yes no 3 0.016157 24.254 By MS/MS By matching By matching 1 1 2 1.2074 1.1916 18.535 4 Median 1.1399 1.1445 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76159 0.84355 NaN 1 0 Median 1.3003 1.2462 0.63399 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4178600 2053300 2125300 2797100 1328900 1468100 0 0 0 869890 507290 362600 511620 217050 294570 0 0 0 0 0 0 38552 3766 40492 204237;204238;204239;204240 207522 207522 1 YAAQLPALFR ATMELAVAVLRDLLRYAAQLPALFRDISMN RDLLRYAAQLPALFRDISMNHLPGLLTSLL R Y A F R D 3 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 10 0 1148.6342 Q8IZL8;C9JFV4;I3L445 Q8IZL8 161 170 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 no no 2 0.00038567 79.597 By MS/MS By matching By MS/MS By matching 1 1 3 2 0.947 0.9913 16.76 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95665 1.051 NaN 1 0 Median 1.2135 1.0678 NaN 1 0 Median 0.92702 0.98819 10.118 3 0 Median 1.2276 1.017 35.638 2 0 Median 13100000 6420800 6679200 0 0 0 0 0 0 3374800 1692600 1682300 220370 99106 121270 8700800 4260800 4440000 803980 368370 435610 38553 3351 40493 204241;204242;204243;204244;204245;204246;204247 207523;207524;207525;207526;207527 207526 5 YAAVHVHTNAAR YFAVFDGHGGVDAARYAAVHVHTNAARQPE AARYAAVHVHTNAARQPELPTDPEGALREA R Y A A R Q 4 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 1 2 0 0 12 0 1308.6687 B5MCT7;P49593;C9J2F3;A8MX49 B5MCT7 40 51 PPM1F Protein phosphatase 1F yes no 2;3 0.0026083 45.161 By MS/MS By MS/MS 2 3 1.2767 1.0995 10.803 5 Median 1.0335 1.0149 6.1566 2 0 Median 1.394 1.2362 7.3032 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4525200 2062000 2463300 1756600 828830 927720 2768700 1233100 1535600 0 0 0 0 0 0 0 0 0 0 0 0 38554 619 40494 204248;204249;204250;204251;204252 207528;207529;207530;207531 207529 4 YAAVTQFEATDAR GFYRSKYTTPSGEVRYAAVTQFEATDARRA VRYAAVTQFEATDARRAFPCWDEPAIKATF R Y A A R R 4 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 13 0 1441.6838 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 169 181 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 4.1633E-15 182.64 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2171 1.1719 29.459 5 Median 1.1393 1.0958 9.4938 2 1 Median 1.6302 1.4587 50.38 2 0 Median 1.2535 1.3367 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76072000 34687000 41385000 50712000 23978000 26735000 19684000 8242000 11442000 5675200 2466800 3208400 0 0 0 0 0 0 0 0 0 38555 960 40495 204253;204254;204255;204256;204257;204258 207532;207533;207534;207535;207536;207537;207538 207533 7 YAAVTQFEATDARR GFYRSKYTTPSGEVRYAAVTQFEATDARRA RYAAVTQFEATDARRAFPCWDEPAIKATFD R Y A R R A 4 2 0 1 0 1 1 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 14 1 1597.7849 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 169 182 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2;3 3.9917E-07 135.6 By MS/MS By MS/MS By matching 2 1 1 1.1638 1.3186 13.256 4 Median 1.0379 1.1531 11.301 2 0 Median 1.4381 1.4228 NaN 1 0 Median 1.2048 1.3921 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63727000 29293000 34434000 59233000 27159000 32074000 1743600 860540 883030 2750700 1273800 1476900 0 0 0 0 0 0 0 0 0 38556 960 40496 204259;204260;204261;204262 207539;207540;207541;207542;207543;207544 207540 6 YAAYHDLPMS LSDIERQIYHHVTGRYAAYHDLPMS_____ HVTGRYAAYHDLPMS_______________ R Y A M S - 2 0 0 1 0 0 0 0 1 0 1 0 1 0 1 1 0 0 2 0 0 0 10 0 1166.5066 Q9Y315;E9PPM8;G3V158 Q9Y315 309 318 DERA Deoxyribose-phosphate aldolase yes no 2 0.044601 44.767 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10492000 0 0 10492000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38557 4402 40497 204263 207545 207545 1 YAAYQQLQR AQGGDYFYSFGGCHRYAAYQQLQRETIPAK FGGCHRYAAYQQLQRETIPAKLVQSTLSDL R Y A Q R E 2 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 9 0 1139.5724 Q9BYN0 Q9BYN0 102 110 SRXN1 Sulfiredoxin-1 yes yes 2 5.8916E-05 121.29 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1.2883 1.0147 26.488 5 Median 1.5641 1.5213 NaN 1 0 Median 1.1721 0.99848 NaN 1 1 Median 0.92561 0.97386 NaN 1 0 Median 1.2883 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9621 1.6941 NaN 1 0 Median 34100000 15144000 18956000 8863500 3702100 5161300 20632000 9348600 11284000 2027100 1052200 974890 1980100 823910 1156200 0 0 0 597110 217380 379720 38558 3893 40498 204264;204265;204266;204267;204268 207546;207547;207548 207547 3 YADEEIPR TYTPSQEGPYMVSVKYADEEIPRSPFKVKV PYMVSVKYADEEIPRSPFKVKVLPTYDASK K Y A P R S 1 1 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 0 991.46108 O75369;E7EN95 O75369 1497 1504 FLNB Filamin-B yes no 2 0.0028856 130.77 By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 0.91255 0.83033 6.5371 5 Median 0.85402 0.86292 NaN 1 0 Median 0.94888 0.78468 10.253 2 0 Median 0.72783 0.80611 NaN 1 0 Median 0.9552 0.83033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39450000 19299000 20151000 3224100 1678600 1545500 31997000 15428000 16569000 3590600 1927800 1662800 637540 264370 373180 0 0 0 0 0 0 38559 1664 40499 204269;204270;204271;204272;204273 207549;207550;207551;207552;207553 207550 5 YADFAPSLLQVWK DVNCAVHLCSLFHQRYADFAPSLLQVWKKH QRYADFAPSLLQVWKKHFEARKEEKTPNIT R Y A W K K 2 0 0 1 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 0 0 13 0 1536.7977 Q9HAU5 Q9HAU5 233 245 UPF2 Regulator of nonsense transcripts 2 yes yes 2 0.0091208 36.693 By MS/MS By matching 1 1 0.96515 0.97136 13.467 2 Median 0.93927 0.88313 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99175 1.0684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1772900 880700 892150 1424600 723570 701040 0 0 0 348240 157130 191110 0 0 0 0 0 0 0 0 0 38560 4011 40500 204274;204275 207554 207554 1 YADGPQLYITEQTR CDGWSLPNPEYYTLRYADGPQLYITEQTRS RYADGPQLYITEQTRSDIKNGTILQLAISP R Y A T R S 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 0 2 0 2 0 0 0 14 0 1653.7999 Q5JVZ5;Q96JJ3;Q5JVZ4 Q5JVZ5 53 66 ELMO2 Engulfment and cell motility protein 2 yes no 2 0.00019405 78.342 By MS/MS By MS/MS By matching 1 1 1 0.91368 0.82293 10.763 3 Median 0.91368 0.90502 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.69474 0.73009 NaN 1 0 Median 0.95877 0.82293 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7141200 3859000 3282200 1715100 772160 942960 0 0 0 4547500 2692900 1854600 878600 394020 484590 0 0 0 0 0 0 38561 3058 40501 204276;204277;204278 207555;207556;207557 207557 3 YADLLLEK DVQRQQEREKELQHRYADLLLEKETLKSKF EKELQHRYADLLLEKETLKSKF________ R Y A E K E 1 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 8 0 963.5277 Q99459 Q99459 788 795 CDC5L Cell division cycle 5-like protein yes yes 2 0.0059615 73.248 By matching By MS/MS By MS/MS By matching By matching 1 1 3 1 1 1.4352 1.2326 27.9 7 Median 0.97226 0.92481 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.97076 1.0553 NaN 1 0 Median 1.4352 1.2326 25.615 3 0 Median 1.8503 1.9134 NaN 1 0 Median 1.6543 1.3821 NaN 1 0 Median 30526000 14913000 15613000 5409000 2880400 2528600 0 0 0 15534000 8141600 7392800 5450800 2156000 3294800 3635000 1572800 2062200 496820 162110 334710 38562 3745 40502 204279;204280;204281;204282;204283;204284;204285 207558;207559;207560 207560 3 YADLSHNR ELNAAQTSVAYGCIKYADLSHNRLNDYIFS VAYGCIKYADLSHNRLNDYIFSFDKMLDDR K Y A N R L 1 1 1 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 8 0 974.45699 P54136 P54136 505 512 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0051787 77.282 By MS/MS By MS/MS 1 1 1.315 1.2307 2.9971 2 Median 1.1924 1.2049 NaN 1 0 Median 1.4503 1.257 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3269900 1452400 1817500 767920 388190 379730 2502000 1064200 1437800 0 0 0 0 0 0 0 0 0 0 0 0 38563 2480 40503 204286;204287 207561;207562;207563;207564 207564 4 YADLTEDQLPSCESLKDTIAR EPDHPFYSNISKDRRYADLTEDQLPSCESL DQLPSCESLKDTIARALPFWNEEIVPQIKE R Y A A R A 2 1 0 3 1 1 2 0 0 1 3 1 0 0 1 2 2 0 1 0 0 0 21 1 2424.1479 P18669 P18669 142 162 PGAM1 Phosphoglycerate mutase 1 yes yes 3 4.3819E-09 57.496 By MS/MS By MS/MS 1 1 0.4549 0.4473 48.323 2 Median 0.60257 0.62949 NaN 1 0 Median 0.34342 0.31783 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20037000 12946000 7090800 12064000 7892900 4171300 7972400 5052900 2919500 0 0 0 0 0 0 0 0 0 0 0 0 38564 2060 40504 204288;204289 207565;207566 207566 2 YADQEVPR HYTPATDGPYTVAVKYADQEVPRSPFKIKV PYTVAVKYADQEVPRSPFKIKVLPAHDASK K Y A P R S 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 8 0 976.46141 Q14315 Q14315 1519 1526 FLNC Filamin-C yes yes 2 0.010468 58.815 By matching By MS/MS 1 3 0.89169 0.7363 33.563 4 Median 1.023 1.0363 NaN 1 0 Median 0.89021 0.72616 27.43 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14341000 7323600 7017900 2271200 1145500 1125700 12070000 6178100 5892200 0 0 0 0 0 0 0 0 0 0 0 0 38565 2871 40505 204290;204291;204292;204293 207567 207567 1 YADVIVHR LASPIYTHFTSPIRRYADVIVHRLLAVAIG FTSPIRRYADVIVHRLLAVAIGADCTYPEL R Y A H R L 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 971.51886 Q9Y2L1;G3V1J5 Q9Y2L1 782 789 DIS3 Exosome complex exonuclease RRP44 yes no 2 0.0048619 79.116 By MS/MS By matching 1 1 1.2174 1.0375 0.42046 2 Median NaN NaN NaN 0 0 Median 1.215 1.0345 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2198 1.0406 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4479400 2025700 2453800 0 0 0 3434100 1445200 1988900 0 0 0 1045300 580440 464830 0 0 0 0 0 0 38566 4384 40506 204294;204295 207568;207569 207569 2 YAEALDYHR PLLNNLGHVCRKLKKYAEALDYHRQALVLI CRKLKKYAEALDYHRQALVLIPQNASTYSA K Y A H R Q 2 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 2 0 0 0 9 0 1136.5251 Q13042;Q5T8C6;A0A3B3ISD2 Q13042 461 469 CDC16 Cell division cycle protein 16 homolog yes no 2 0.0027536 69.825 By MS/MS 1 0.89816 0.94683 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89816 0.94683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3906900 1945200 1961700 0 0 0 0 0 0 3906900 1945200 1961700 0 0 0 0 0 0 0 0 0 38567 2779 40507 204296 207570 207570 1 YAEAVTR AGWMGLDCGPESSKKYAEAVTRAKQIVWNG CGPESSKKYAEAVTRAKQIVWNGPVGVFEW K Y A T R A 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 7 0 808.40792 P00558 P00558 324 330 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.009327 84.244 By MS/MS By MS/MS By matching 4 3 1 1.184 1.1073 14.966 8 Median 1.2486 1.2524 17.919 4 0 Linear 1.4644 1.2762 11.091 3 0 Plateau 1.1388 1.1594 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25786000 10430000 15356000 3603400 1539800 2063700 21699000 8726100 12973000 482850 164320 318520 0 0 0 0 0 0 0 0 0 38568 1824 40508 204297;204298;204299;204300;204301;204302;204303;204304 207571;207572;207573;207574;207575;207576;207577 207577 7 YAEEELEQVR KELREGTENERSRQKYAEEELEQVREALRK RSRQKYAEEELEQVREALRKAEKELESHSS K Y A V R E 1 1 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1264.5935 Q13586;E9PNJ4;G0XQ39;H0YDB2 Q13586 316 325 STIM1 Stromal interaction molecule 1 yes no 2 0.0011397 87.308 By MS/MS 1 1.4172 1.2212 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4172 1.2212 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2738700 1092200 1646500 0 0 0 0 0 0 0 0 0 2738700 1092200 1646500 0 0 0 0 0 0 38569 2827 40509 204305 207578 207578 1 YAEIVHLTLPDGTK VNGPLVILDHVKFPRYAEIVHLTLPDGTKR RYAEIVHLTLPDGTKRSGQVLEVSGSKAVV R Y A T K R 1 0 0 1 0 0 1 1 1 1 2 1 0 0 1 0 2 0 1 1 0 0 14 0 1555.8246 P21281;H0YC04 P21281 68 81 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 3 0.062529 10.854 By matching By MS/MS 1 2 1.4383 1.2168 13.273 3 Plateau NaN NaN NaN 0 0 Median 1.4383 1.2168 NaN 1 0 Median 0.93861 0.96688 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6458600 2308300 4150300 0 0 0 2227400 692410 1535000 4231200 1615900 2615300 0 0 0 0 0 0 0 0 0 38570 2086 40510 204306;204307;204308 207579 207579 1 YAEIVHLTLPDGTKR VNGPLVILDHVKFPRYAEIVHLTLPDGTKR YAEIVHLTLPDGTKRSGQVLEVSGSKAVVQ R Y A K R S 1 1 0 1 0 0 1 1 1 1 2 1 0 0 1 0 2 0 1 1 0 0 15 1 1711.9257 P21281;H0YC04 P21281 68 82 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes no 3 0.053989 17.489 By MS/MS By matching By matching 1 1 1 1.003 1.0006 65.414 3 Median 1.003 1.0006 NaN 1 0 Median 0.3878 0.36711 NaN 1 0 Median 1.127 1.2549 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10995000 5450300 5544400 7834800 3832100 4002800 1001000 755160 245850 2158800 863040 1295800 0 0 0 0 0 0 0 0 0 38571 2086 40511 204309;204310;204311 207580 207580 0 YAELLEEHR TLSTPEEKLAALCKKYAELLEEHRNSQKQM AALCKKYAELLEEHRNSQKQMKLLQKKQSQ K Y A H R N 1 1 0 0 0 0 3 0 1 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1158.5669 P40222 P40222 196 204 TXLNA Alpha-taxilin yes yes 2 0.0016494 89.698 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.98155 0.99798 43.037 4 Median 1.0186 0.99972 NaN 1 0 Median 2.1906 1.9938 NaN 1 0 Median 0.94584 0.99623 NaN 1 1 Median 0.85913 0.71699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9025300 4794400 4230800 2514800 1235900 1278900 752060 239430 512630 4073900 2344700 1729200 1684500 974390 710160 0 0 0 0 0 0 38572 2284 40512 204312;204313;204314;204315 207581;207582;207583 207583 3 YAEVLDLR LVLNTEGINLPELFKYAEVLDLRRLYSNDI NLPELFKYAEVLDLRRLYSNDIHAIANTYG K Y A L R R 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 977.5182 O95602;B9ZVN9 O95602 1591 1598 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.0054215 85.212 By MS/MS 1 0.89601 0.98725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89601 0.98725 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5136200 2471900 2664300 0 0 0 0 0 0 5136200 2471900 2664300 0 0 0 0 0 0 0 0 0 38573 1781 40513 204316 207584 207584 1 YAEVLDLRR LVLNTEGINLPELFKYAEVLDLRRLYSNDI LPELFKYAEVLDLRRLYSNDIHAIANTYGI K Y A R R L 1 2 0 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 9 1 1133.6193 O95602;B9ZVN9 O95602 1591 1599 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 2 0.00056447 133.6 By MS/MS 1 1.1957 1.5104 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1957 1.5104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17812000 8243800 9567900 0 0 0 0 0 0 17812000 8243800 9567900 0 0 0 0 0 0 0 0 0 38574 1781 40514 204317 207585;207586 207585 2 YAEYSFTSLPVPESNLR DDLPNVCEEKNETSKYAEYSFTSLPVPESN EYSFTSLPVPESNLRTRNAIKRLHKRDSFD K Y A L R T 1 1 1 0 0 0 2 0 0 0 2 0 0 1 2 3 1 0 2 1 0 0 17 0 1971.9578 Q5UIP0 Q5UIP0 1659 1675 RIF1 Telomere-associated protein RIF1 yes yes 2 2.7598E-05 56.225 By MS/MS By MS/MS By matching 3 1 1 0.69623 0.63106 15.358 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69623 0.75571 18.117 3 1 Median 0.71598 0.63106 NaN 1 0 Median 0.54419 0.56954 NaN 1 0 Median NaN NaN NaN 0 0 Median 18415000 10810000 7605400 0 0 0 0 0 0 15724000 9211600 6512300 751120 422570 328550 1940400 1175800 764540 0 0 0 38575 3109 40515 204318;204319;204320;204321;204322 207587;207588;207589;207590;207591;207592 207589 6 YAFDFAR RSQLNDISSFKNIYRYAFDFARDKDQRSLD SSFKNIYRYAFDFARDKDQRSLDIDTAKSM R Y A A R D 2 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 7 0 888.413 Q9BTE7;E9PM04;H0YCN4;H0Y9C5;H0Y907;Q92564 Q9BTE7 144 150 DCUN1D5;DCUN1D4 DCN1-like protein 5;DCN1-like protein;DCN1-like protein 4 yes no 2 0.018281 63.287 By MS/MS By matching By MS/MS By MS/MS By matching 2 2 1 1 1 1.269 1.1903 22.488 7 Median 1.3694 1.3246 15.119 2 0 Median 1.2808 1.0825 6.0365 2 0 Median 1.269 1.2186 NaN 1 0 Median 1.2093 1.0024 NaN 1 0 Median 1.928 1.9094 NaN 1 0 Median NaN NaN NaN 0 0 Median 43611000 17901000 25710000 6447300 2630400 3816800 1394000 566660 827340 28835000 12023000 16812000 3232700 1499300 1733400 3701700 1182000 2519700 0 0 0 38576 3826 40516 204323;204324;204325;204326;204327;204328;204329 207593;207594;207595;207596;207597;207598 207594 6 YAFELVDK TISPLSTYEESKVSKYAFELVDKQALLDSE EESKVSKYAFELVDKQALLDSEGNADIDQV K Y A D K Q 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 8 0 983.4964 Q9UQR1 Q9UQR1 425 432 ZNF148 Zinc finger protein 148 yes yes 2 0.012958 53.968 By MS/MS By matching 1 2 1.1147 1.1946 13.741 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0865 1.1946 NaN 1 0 Median 1.276 1.0948 18.078 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6767300 3141800 3625500 0 0 0 0 0 0 6257500 2945100 3312400 509860 196710 313150 0 0 0 0 0 0 38577 4364 40517 204330;204331;204332 207599 207599 1 YAFGQETNVPLNNFSADQVTR LIRECSDVQPKLWARYAFGQETNVPLNNFS TNVPLNNFSADQVTRALENVLSGKA_____ R Y A T R A 2 1 3 1 0 2 1 1 0 0 1 0 0 2 1 1 2 0 1 2 0 0 21 0 2370.124 O43678 O43678 69 89 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 3 5.2692E-12 70.414 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 0.81734 0.8296 19.468 5 Median 0.68829 0.67098 NaN 1 0 Median 1.2689 1.0501 6.5589 2 0 Median 0.78976 0.80113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81734 0.8296 NaN 1 0 Median NaN NaN NaN 0 0 Median 13894000 6977600 6916200 4256600 2361800 1894800 2892800 1235300 1657400 6368000 3199800 3168200 0 0 0 376390 180600 195790 0 0 0 38578 1584 40518 204333;204334;204335;204336;204337 207600;207601;207602;207603 207601 4 YAFSGVAFTGAK IKEKLSQGVTLVVDRYAFSGVAFTGAKENF VDRYAFSGVAFTGAKENFSLDWCKQPDVGL R Y A A K E 3 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 1 1 0 0 12 0 1217.6081 P23919;H7BZ20 P23919 98 109 DTYMK Thymidylate kinase yes no 2 8.6137E-05 92.538 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.0706 0.91639 11.508 4 Median 0.97893 0.90353 NaN 1 0 Median 1.107 0.92944 NaN 1 0 Median 1.2026 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0354 0.87758 NaN 1 0 Median 75141000 37651000 37490000 62193000 31491000 30702000 6056900 3016200 3040800 6716900 3054300 3662600 0 0 0 0 0 0 174020 89502 84515 38579 2120 40519 204338;204339;204340;204341 207604;207605;207606;207607;207608;207609 207605 6 YAFSQLR ILVGPEGCGKGMLLRYAFSQLRSTQIATVH CGKGMLLRYAFSQLRSTQIATVHCSAQTTS R Y A L R S 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 7 0 883.4552 Q8NCM8 Q8NCM8 2303 2309 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 yes yes 2 0.018479 62.714 By matching By MS/MS 1 2 1.2642 1.1101 15.775 3 Median 1.0349 1.0425 NaN 1 0 Median 1.4467 1.2494 16.713 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7663900 3289600 4374300 3807200 1930300 1876900 3856700 1359300 2497400 0 0 0 0 0 0 0 0 0 0 0 0 38580 3418 40520 204342;204343;204344 207610 207610 1 YAFVNWINK LSSEGTQHSYSEEEKYAFVNWINKALENDP YSEEEKYAFVNWINKALENDPDCRHVIPMN K Y A N K A 1 0 2 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 1 1 0 0 9 0 1153.592 P13797;A0A0A0MSQ0;U3KQI3;P13796;Q5TBN3 P13797 127 135 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 0.011679 47.067 By matching By MS/MS By MS/MS By matching 1 2 2 1 1.1089 0.98048 18.273 6 Median 1.0624 0.9981 NaN 1 0 Median 1.3671 1.1467 24.665 2 0 Median 1.0955 1.0995 26.508 2 0 Median 0.90469 0.92889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54827000 25765000 29062000 263980 132980 131010 38713000 18637000 20076000 14581000 6362200 8219100 1268100 631990 636070 0 0 0 0 0 0 38581 1995 40521 204345;204346;204347;204348;204349;204350 207611;207612;207613 207612 3 YAGEEGMIEDMK PMDLKIIEHNIRNDKYAGEEGMIEDMKLMF NDKYAGEEGMIEDMKLMFRNARHYNEEGSQ K Y A M K L 1 0 0 1 0 0 3 2 0 1 0 1 2 0 0 0 0 0 1 0 0 0 12 0 1371.5687 Q86U86;E7EVG2;H0Y5B5 Q86U86 580 591 PBRM1 Protein polybromo-1 yes no 2 0.0093263 37.556 By matching By MS/MS 1 1 1.1276 1.133 24.659 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85855 0.95173 NaN 1 0 Median 1.4809 1.3489 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9165900 4136100 5029800 0 0 0 0 0 0 8110500 3680600 4429900 1055400 455580 599830 0 0 0 0 0 0 38582 3273 40522 204351;204352 207614 207614 1 YAGEPVPFIEPPESFEFYAQQLR KLDDLFLKRYASLLKYAGEPVPFIEPPESF IEPPESFEFYAQQLRKLRENSS________ K Y A L R K 2 1 0 0 0 2 4 1 0 1 1 0 0 3 4 1 0 0 2 1 0 0 23 0 2713.3064 P42704 P42704 1365 1387 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.059668 7.1933 By MS/MS By matching By matching 1 1 1 0.63478 0.67684 15.642 3 Median 0.52628 0.52839 NaN 1 0 Median 0.80449 0.70573 NaN 1 0 Median 0.63478 0.67684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2030600 1279000 751570 1258200 805000 453170 374590 207690 166900 397800 266310 131490 0 0 0 0 0 0 0 0 0 38583 2315 40523 204353;204354;204355 207615;207616 207616 2 YAGEPVPFIEPPESFEFYAQQLRK KLDDLFLKRYASLLKYAGEPVPFIEPPESF EPPESFEFYAQQLRKLRENSS_________ K Y A R K L 2 1 0 0 0 2 4 1 0 1 1 1 0 3 4 1 0 0 2 1 0 0 24 1 2841.4014 P42704 P42704 1365 1388 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.072017 2.8804 By MS/MS By matching 1 1 0.65248 0.71183 24.323 2 Median 0.5767 0.59935 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73821 0.84542 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3653200 2199200 1454100 3014200 1907700 1106500 0 0 0 639010 291460 347550 0 0 0 0 0 0 0 0 0 38584 2315 40524 204356;204357 207617 207617 1 YAGFIHMK MRNKADQQLVEIDKKYAGFIHMKAVAGMKM LVEIDKKYAGFIHMKAVAGMKMSYQVQQAI K Y A M K A 1 0 0 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 8 0 965.47931 A0A590UJS4;Q6KC79 A0A590UJS4 2349 2356 NIPBL Nipped-B-like protein yes no 2 0.010267 59.205 By matching By MS/MS By MS/MS 1 1 1 1.1035 1.1572 18.876 3 Median NaN NaN NaN 0 0 Median 1.4517 1.2416 NaN 1 0 Median 0.79653 0.86935 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1035 1.1572 NaN 1 0 Median NaN NaN NaN 0 0 Median 10183000 4628000 5555200 0 0 0 3028800 1199800 1828900 2376100 1297500 1078600 0 0 0 4778400 2130700 2647700 0 0 0 38585 488 40525 204358;204359;204360 207618;207619 207619 2 YAGKDGYNYTLSK ETERCIESLIAVFQKYAGKDGYNYTLSKTE QKYAGKDGYNYTLSKTEFLSFMNTELAAFT K Y A S K T 1 0 1 1 0 0 0 2 0 0 1 2 0 0 0 1 1 0 3 0 0 0 13 1 1478.7042 P31949 P31949 24 36 S100A11 Protein S100-A11;Protein S100-A11, N-terminally processed yes yes 2;3 2.1898E-07 104.41 By MS/MS By MS/MS 5 8 1.2582 0.99798 13.148 13 Median 1.0657 0.97818 8.8069 5 0 Median 1.3401 1.0693 13.458 8 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 131170000 59047000 72125000 69017000 32469000 36548000 62154000 26578000 35576000 0 0 0 0 0 0 0 0 0 0 0 0 38586 2213 40526 204361;204362;204363;204364;204365;204366;204367;204368;204369;204370;204371;204372;204373 207620;207621;207622;207623;207624;207625;207626;207627;207628;207629;207630;207631;207632;207633 207629 14 YAGLLFSSRPDAHDR FEKVYFPYLLISKKRYAGLLFSSRPDAHDR YAGLLFSSRPDAHDRMDCKGLEAVRRDNCP R Y A D R M 2 2 0 2 0 0 0 1 1 0 2 0 0 1 1 2 0 0 1 0 0 0 15 1 1703.838 M0R2B7;P28340;A0A087WYJ2;M0QZR8;M0QXE6;M0QXQ2 M0R2B7 835 849 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit yes no 3 0.00011839 60.401 By MS/MS By MS/MS 1 1 0.86105 0.89114 18.465 2 Median 0.70391 0.78207 NaN 1 0 Median 1.0533 1.0154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13564000 7851900 5712000 10738000 6414400 4323800 2825800 1437600 1388200 0 0 0 0 0 0 0 0 0 0 0 0 38587 1436 40527 204374;204375 207634;207635;207636 207635 3 YAGPEDDAAITLAFSK KEYFADMERHRILFRYAGPEDDAAITLAFS AGPEDDAAITLAFSKKKIDDRKEWLTNFME R Y A S K K 4 0 0 2 0 0 1 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 16 0 1667.8043 Q02880;E9PCY5 Q02880 661 676 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 6.1853E-10 104.87 By MS/MS By matching By matching 1 2 1 1.0413 0.91906 17.379 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65913 0.72737 NaN 1 0 Median 1.0413 0.91906 6.4907 2 0 Median NaN NaN NaN 0 0 Median 1.3019 1.1003 NaN 1 0 Median 17100000 9161900 7938400 0 0 0 0 0 0 11791000 6741800 5049400 5073200 2331400 2741800 0 0 0 235780 88690 147090 38588 2704 40528 204376;204377;204378;204379 207637;207638 207638 2 YAGSALQYEDVSTAVQNLQK RLTPEDFARAQKYCKYAGSALQYEDVSTAV LQYEDVSTAVQNLQKALKLLTTGRE_____ K Y A Q K A 3 0 1 1 0 3 1 1 0 0 2 1 0 0 0 2 1 0 2 2 0 0 20 0 2184.0699 Q9NP79;A0A087WY55;Q5TGM0 Q9NP79 278 297 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes no 2;3 8.1333E-14 105.65 By MS/MS By matching By MS/MS By MS/MS By matching 3 1 3 1 1 1.2243 1.0893 17.166 9 Median 0.96883 0.90548 11.006 3 0 Median 1.2617 1.0875 NaN 1 0 Median 1.2243 1.1737 4.4368 3 0 Median NaN NaN NaN 0 0 Median 1.5737 1.5733 NaN 1 0 Median 1.3175 1.0893 NaN 1 0 Median 42574000 19077000 23498000 20742000 9776400 10966000 1848000 868860 979160 11217000 4972600 6244100 0 0 0 6921700 2778200 4143600 1845600 680460 1165200 38589 76 40529 204380;204381;204382;204383;204384;204385;204386;204387;204388 207639;207640;207641;207642;207643;207644;207645;207646;207647 207640 9 YAHGLISDYIPK SGDQASTDKEEDYIRYAHGLISDYIPKELS YIRYAHGLISDYIPKELSDDLSKYLKLPEP R Y A P K E 1 0 0 1 0 0 0 1 1 2 1 1 0 0 1 1 0 0 2 0 0 0 12 0 1375.7136 Q5TBB1;A0A2R8YGP2;A0A2R8Y6Q6;A0A087WXR7;A0A2R8YCX2;A0A2R8Y6M7;A0A2R8Y7R8;A0A2R8YEH2;A0A2R8Y6Y1;A0A2R8YCJ4;A0A2R8Y761;A0A087WZJ6;A0A2R8Y7Q3;A0A2R8Y883;A0A2R8YCP1;A0A2R8YE60;A0A2R8Y687;A0A2R8Y4S2;A0A2R8YEC1;A0A2R8Y459;A0A2R8YEB4;A0A2R8YEU9 Q5TBB1 211 222 RNASEH2B Ribonuclease H2 subunit B yes no 3 0.0068047 30.55 By MS/MS By matching By MS/MS By matching 2 2 2 2 1.0509 0.96481 12.559 8 Median 0.97621 0.93272 6.249 2 0 Median 1.2949 1.1192 22.456 2 0 Median 1.0242 0.96794 5.9898 2 0 Median 1.1103 0.92831 7.9239 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14535000 7046500 7488000 8307900 3913900 4394000 840740 414630 426110 4836800 2473800 2363000 549060 244090 304970 0 0 0 0 0 0 38590 69 40530 204389;204390;204391;204392;204393;204394;204395;204396 207648;207649;207650 207648 3 YAHLSAR AMHPQVNIYSVTRKRYAHLSARPADEIAVD IYSVTRKRYAHLSARPADEIAVDRDVPWGV R Y A A R P 2 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 7 0 816.42424 Q16658 Q16658 152 158 FSCN1 Fascin yes yes 2 0.031276 49.358 By MS/MS 1 1.1604 0.99553 NaN 1 Median NaN NaN NaN 0 0 Median 1.1604 0.99553 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2608600 1228200 1380400 0 0 0 2608600 1228200 1380400 0 0 0 0 0 0 0 0 0 0 0 0 38591 2993 40531 204397 207651;207652;207653;207654 207653 4 YAHLSARPADEIAVDR AMHPQVNIYSVTRKRYAHLSARPADEIAVD AHLSARPADEIAVDRDVPWGVDSLITLAFQ R Y A D R D 4 2 0 2 0 0 1 0 1 1 1 0 0 0 1 1 0 0 1 1 0 0 16 1 1782.9013 Q16658 Q16658 152 167 FSCN1 Fascin yes yes 3;4 4.2133E-05 62.165 By MS/MS By MS/MS By MS/MS 4 1 2 0.89921 0.9297 24.369 7 Median 0.89914 0.89686 33.855 4 1 Median 1.1358 1.0243 NaN 1 0 Median 0.92702 1.0012 10.484 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66772000 33924000 32848000 57019000 29282000 27737000 4405100 1896900 2508200 5347800 2745200 2602600 0 0 0 0 0 0 0 0 0 38592 2993 40532 204398;204399;204400;204401;204402;204403;204404 207655;207656;207657;207658;207659;207660;207661;207662;207663 207656 9 YAHQSGFHVDR YGHILAGTIKDIVTRYAHQSGFHVDRRFGW IVTRYAHQSGFHVDRRFGWDCHGLPVEYEI R Y A D R R 1 1 0 1 0 1 0 1 2 0 0 0 0 1 0 1 0 0 1 1 0 0 11 0 1315.6058 P41252;A0A0A0MSX9;Q5TCD1 P41252 71 81 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2;3 4.3195E-05 91.867 By MS/MS By MS/MS By MS/MS 1 2 1 1.2366 1.1326 30.075 4 Median 1.1691 1.1771 NaN 1 0 Median 1.736 1.451 40.471 2 1 Median NaN NaN NaN 0 0 Median 1.146 0.97942 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25345000 9960700 15384000 1138100 600170 537940 23433000 8998600 14434000 0 0 0 774040 361900 412140 0 0 0 0 0 0 38593 2302 40533 204405;204406;204407;204408 207664;207665;207666;207667;207668;207669 207666 6 YAHQSGFHVDRR YGHILAGTIKDIVTRYAHQSGFHVDRRFGW VTRYAHQSGFHVDRRFGWDCHGLPVEYEID R Y A R R F 1 2 0 1 0 1 0 1 2 0 0 0 0 1 0 1 0 0 1 1 0 0 12 1 1471.7069 P41252;A0A0A0MSX9;Q5TCD1 P41252 71 82 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.00031358 54.471 By MS/MS By matching 1 1 1.303 1.4109 0.71935 2 Median NaN NaN NaN 0 0 Median 1.456 1.4038 NaN 1 0 Median 1.166 1.4181 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3557100 1540800 2016300 0 0 0 3335500 1450200 1885200 221690 90624 131060 0 0 0 0 0 0 0 0 0 38594 2302 40534 204409;204410 207670;207671 207671 2 YAHVVLR KIAFAITAIKGVGRRYAHVVLRKADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE R Y A L R K 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 7 0 856.49192 P62269 P62269 40 46 RPS18 40S ribosomal protein S18 yes yes 2 0.0017395 109.88 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 2 1.1991 1.1403 12.787 10 Median 1.0985 1.038 13.215 2 0 Median 1.1972 0.9794 1.3941 2 0 Median 1.2049 1.1838 6.3401 2 0 Median NaN NaN NaN 0 0 Median 1.2625 1.3168 13.558 2 0 Median 1.4705 1.1493 1.0331 2 0 Median 143540000 64595000 78949000 40491000 18517000 21974000 89116000 40061000 49055000 9391300 4136800 5254500 0 0 0 2199100 911440 1287700 2347400 969550 1377900 38595 2578 40535 204411;204412;204413;204414;204415;204416;204417;204418;204419;204420 207672;207673;207674;207675;207676;207677;207678;207679;207680;207681 207673 10 YAHVVLRK KIAFAITAIKGVGRRYAHVVLRKADIDLTK IKGVGRRYAHVVLRKADIDLTKRAGELTED R Y A R K A 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 1 984.58688 P62269 P62269 40 47 RPS18 40S ribosomal protein S18 yes yes 2 0.042056 39.542 By matching By MS/MS By matching 1 1 1 1.2086 1.0664 9.5063 3 Median 1.0544 1.0465 NaN 1 0 Median 1.2086 1.0664 NaN 1 0 Median 1.2273 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3829000 1776800 2052200 1180000 566330 613690 2455200 1128600 1326500 193810 81881 111930 0 0 0 0 0 0 0 0 0 38596 2578 40536 204421;204422;204423 207682 207682 1 YAHWVVSQPPDTYLKPLMTELLK KKALVRSITCWTLSRYAHWVVSQPPDTYLK PPDTYLKPLMTELLKRILDSNKRVQEAACS R Y A L K R 1 0 0 1 0 1 1 0 1 0 4 2 1 0 3 1 2 1 2 2 0 0 23 1 2728.4298 Q92973 Q92973 473 495 TNPO1 Transportin-1 yes yes 3;4 0.00014435 27.904 By MS/MS 4 0.67401 0.65154 13.428 4 Median NaN NaN NaN 0 0 Median 0.67401 0.65154 13.428 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19304000 10934000 8370300 0 0 0 19304000 10934000 8370300 0 0 0 0 0 0 0 0 0 0 0 0 38597 3570 40537 204424;204425;204426;204427 207683;207684;207685;207686;207687 207684 5 YAIAVNDLGTEYVHR TKVPFCLQSCVKPLKYAIAVNDLGTEYVHR YAIAVNDLGTEYVHRYVGKEPSGLRFNKLF K Y A H R Y 2 1 1 1 0 0 1 1 1 1 1 0 0 0 0 0 1 0 2 2 0 0 15 0 1719.858 O94925;H7BZD1 O94925 293 307 GLS Glutaminase kidney isoform, mitochondrial yes no 3 3.466E-05 73.91 By MS/MS By matching 3 1 1.2811 1.478 13.813 4 Linear 1.5825 1.53 14.244 3 2 Plateau 1.297 1.1287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22650000 9062100 13588000 21301000 8467500 12834000 1348900 594600 754320 0 0 0 0 0 0 0 0 0 0 0 0 38598 1738 40538 204428;204429;204430;204431 207688;207689;207690 207688 3 YAICSALAASALPALVMSK TWRRWHRRVNTTQKRYAICSALAASALPAL SALAASALPALVMSKGHRIEEVPELPLVVE R Y A S K G 6 0 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 19 0 1936.0162 P36578;H3BM89;H3BTP7 P36578 122 140 RPL4 60S ribosomal protein L4 yes no 2 0.036687 21.759 By matching By MS/MS 2 1 0.96016 0.86909 72.594 3 Plateau NaN NaN NaN 0 0 Median 0.49939 0.43494 82.314 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96567 0.92207 NaN 1 0 Median NaN NaN NaN 0 0 Median 6083100 3270700 2812400 0 0 0 3103400 1723400 1380000 0 0 0 0 0 0 2979700 1547300 1432400 0 0 0 38599 2260 40539 204432;204433;204434 207691 207691 1 YAILNEPFK NHGYARWQDIQNDPRYAILNEPFKGEMNRG IQNDPRYAILNEPFKGEMNRGNFLEIKNKF R Y A F K G 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1093.5808 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1758 1766 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 0.0008527 94.302 By MS/MS By MS/MS By MS/MS 1 4 1 0.91053 0.87057 9.5316 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89043 0.98161 NaN 1 0 Median 0.94584 0.87057 9.4585 4 0 Median 0.79333 0.83222 NaN 1 0 Median NaN NaN NaN 0 0 Median 23138000 12199000 10939000 0 0 0 0 0 0 15939000 8375900 7562900 2731200 1375500 1355700 4467800 2447700 2020100 0 0 0 38600 246 40540 204435;204436;204437;204438;204439;204440 207692;207693;207694;207695;207696;207697;207698;207699 207693 8 YAILNEPFKGEMNR NHGYARWQDIQNDPRYAILNEPFKGEMNRG RYAILNEPFKGEMNRGNFLEIKNKFLARRF R Y A N R G 1 1 2 0 0 0 2 1 0 1 1 1 1 1 1 0 0 0 1 0 0 0 14 1 1680.8294 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8YDW2;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839 1758 1771 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2;3 1.0233E-08 119.16 By MS/MS By MS/MS By MS/MS By matching 6 7 6 5 0.91095 0.9758 45.237 24 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91073 1.0645 7.6332 6 0 Median 1.0062 0.93726 79.856 7 0 Median 0.79525 0.86999 20.049 6 0 Median 0.95014 0.84401 30.473 5 0 Median 264770000 133070000 131700000 0 0 0 0 0 0 204630000 101840000 102790000 7415600 2733400 4682200 49463000 26739000 22724000 3263600 1761000 1502500 38601 246 40541;40542 204441;204442;204443;204444;204445;204446;204447;204448;204449;204450;204451;204452;204453;204454;204455;204456;204457;204458;204459;204460;204461;204462;204463;204464 207700;207701;207702;207703;207704;207705;207706;207707;207708;207709;207710;207711;207712;207713 207705 108 14 YAIPTIDAEAYAIGKK KDPNMKGAMLTNTGKYAIPTIDAEAYAIGK AIPTIDAEAYAIGKKEKPPFLPEEPSSSSE K Y A K K E 4 0 0 1 0 0 1 1 0 3 0 2 0 0 1 0 1 0 2 0 0 0 16 1 1722.9192 Q7Z6E9;H3BSK8;H3BUN0;A0A087WY32 Q7Z6E9 218 233 RBBP6 E3 ubiquitin-protein ligase RBBP6 yes no 3 0.050803 17.701 By MS/MS 1 0.73198 0.84116 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73198 0.84116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2649800 1193100 1456700 0 0 0 0 0 0 2649800 1193100 1456700 0 0 0 0 0 0 0 0 0 38602 3251 40543 204465 207714 207714 0 YALLPHLYTLFHQAHVAGETVAR SEPAQQAMRKALTLRYALLPHLYTLFHQAH TLFHQAHVAGETVARPLFLEFPKDSSTWTV R Y A A R P 4 1 0 0 0 1 1 1 3 0 4 0 0 1 1 0 2 0 2 2 0 0 23 0 2606.3758 P10253 P10253 703 725 GAA Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase yes yes 4 0.059699 6.9526 By MS/MS 1 1.8314 1.5826 NaN 1 Median NaN NaN NaN 0 0 Median 1.8314 1.5826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7664300 2569500 5094900 0 0 0 7664300 2569500 5094900 0 0 0 0 0 0 0 0 0 0 0 0 38603 1935 40544 204466 207715 207715 1 YALPLVGHR QGSTQDSAIKDFVLKYALPLVGHRKVSNDA KDFVLKYALPLVGHRKVSNDAKRYTRRPLV K Y A H R K 1 1 0 0 0 0 0 1 1 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1024.5818 P13667;A0A499FI48 P13667 392 400 PDIA4 Protein disulfide-isomerase A4 yes no 2 0.00080273 97.068 By MS/MS By MS/MS By MS/MS 1 2 1 0.90791 0.82238 8.2087 4 Median 0.85657 0.81028 NaN 1 0 Median 1.0249 0.8882 8.7943 2 0 Median 0.74239 0.78286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28433000 14656000 13778000 16021000 8537500 7483700 8562600 3776400 4786200 3849500 2341700 1507800 0 0 0 0 0 0 0 0 0 38604 1993 40545 204467;204468;204469;204470 207716;207717;207718;207719 207716 4 YALQMEQLNGILLHLESELAQTR LKASLENSLREVEARYALQMEQLNGILLHL NGILLHLESELAQTRAEGQRQAQEYEALLN R Y A T R A 2 1 1 0 0 3 3 1 1 1 6 0 1 0 0 1 1 0 1 0 0 0 23 0 2669.3847 P05783;F8VZY9 P05783 331 353 KRT18 Keratin, type I cytoskeletal 18 yes no 2;3 2.4856E-65 208.43 By MS/MS By MS/MS 2 3 1.1337 1.0226 6.3861 5 Median NaN NaN NaN 0 0 Median 1.2185 1.0447 8.9668 2 0 Median 1.0722 1.0226 6.3334 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 270500000 123000000 147500000 0 0 0 8657800 3760700 4897100 261850000 119240000 142600000 0 0 0 0 0 0 0 0 0 38605 1869 40546;40547 204471;204472;204473;204474;204475 207720;207721;207722;207723;207724 207721 625 5 YALQSQQR NLAVKHKISREECDKYALQSQQRWKAANDA SREECDKYALQSQQRWKAANDAGYFNDEMA K Y A Q R W 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 8 0 992.50394 A0A0B4J2A4;P42765;K7EME0 A0A0B4J2A4 179 186 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes no 2 0.015483 50.127 By MS/MS 1 1.3153 1.1384 NaN 1 Median NaN NaN NaN 0 0 Median 1.3153 1.1384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 895960 382920 513040 0 0 0 895960 382920 513040 0 0 0 0 0 0 0 0 0 0 0 0 38606 220 40548 204476 207725 207725 1 YALSVGYR GTWKSEPGQVKAAVKYALSVGYRHIDCAAI QVKAAVKYALSVGYRHIDCAAIYGNEPEIG K Y A Y R H 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 8 0 927.48142 P14550;V9GYG2;V9GYP9;Q5T621 P14550 35 42 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes no 2 0.0052175 77.058 By MS/MS By MS/MS 1 1 1.0031 0.91539 12.009 2 Median 0.84026 0.84086 NaN 1 0 Median 1.1976 0.99651 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33477000 17148000 16329000 27129000 14059000 13070000 6348700 3089200 3259500 0 0 0 0 0 0 0 0 0 0 0 0 38607 2004 40549 204477;204478 207726;207727 207727 2 YALTGDEVK RECLPLIIFLRNRLKYALTGDEVKKICMQR LRNRLKYALTGDEVKKICMQRFIKIDGKVR K Y A V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 994.49713 P62701;Q8TD47 P62701 54 62 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2 0.0011629 84.568 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 1 1 1 1.1172 1.0397 16.894 9 Median 1.1172 1.0397 12.311 3 0 Median 1.0734 0.898 22.513 3 0 Median 1.107 1.0376 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1559 1.1775 NaN 1 0 Median 1.3311 1.0976 NaN 1 0 Median 92989000 43401000 49589000 34241000 16035000 18206000 18843000 8944200 9898600 14599000 7648900 6949900 0 0 0 10895000 4764100 6130700 14412000 6008300 8403500 38608 2593 40550 204479;204480;204481;204482;204483;204484;204485;204486;204487 207728;207729;207730;207731;207732;207733;207734;207735;207736;207737 207736 10 YALTGDEVKK RECLPLIIFLRNRLKYALTGDEVKKICMQR RNRLKYALTGDEVKKICMQRFIKIDGKVRT K Y A K K I 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1122.5921 P62701;Q8TD47 P62701 54 63 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 no no 2 0.00063084 89.698 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.312 1.235 17.874 8 Median 1.342 1.3331 33.04 2 0 Median 1.1731 1.0648 18.919 2 0 Median 1.3632 1.3584 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1717 1.2529 NaN 1 0 Median 1.3885 1.1944 11.314 2 0 Median 54890000 24177000 30712000 25856000 11666000 14190000 6169700 2533800 3635900 9505800 4058600 5447200 0 0 0 9818800 4481000 5337800 3539800 1438400 2101400 38609 2593 40551 204488;204489;204490;204491;204492;204493;204494;204495 207738;207739;207740;207741;207742;207743;207744;207745;207746;207747;207748 207739 11 YALTTTLSAR AVDNGISQWAEGEPRYALTTTLSARVARLN EGEPRYALTTTLSARVARLNPTWNHPDQDT R Y A A R V 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 3 0 1 0 0 0 10 0 1095.5924 Q9HB07;F8VR84 Q9HB07 189 198 C12orf10 UPF0160 protein MYG1, mitochondrial yes no 2 2.8518E-05 143.73 By MS/MS By MS/MS 1 1 1.1141 1.0365 1.6088 2 Median 1.0211 1.0248 NaN 1 0 Median 1.2155 1.0484 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 53038000 26804000 26233000 50194000 25599000 24596000 2843600 1205900 1637700 0 0 0 0 0 0 0 0 0 0 0 0 38610 4014 40552 204496;204497 207749;207750;207751 207749 3 YALVWGTSTK HVCHRIHRSLASQFKYALVWGTSTKYSPQR ASQFKYALVWGTSTKYSPQRVGLTHTMEHE K Y A T K Y 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 2 1 1 1 0 0 10 0 1124.5866 P55039 P55039 332 341 DRG2 Developmentally-regulated GTP-binding protein 2 yes yes 2 0.009047 64.711 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38611 2492 40553 204498 207752 207752 1 YALYDASFETK PFKHFVGMLPEKDCRYALYDASFETKESRK KDCRYALYDASFETKESRKEELMFFLWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 2 0 0 0 11 0 1306.6081 P60981;F6RFD5 P60981 82 92 DSTN Destrin yes no 2 9.8588E-15 183.47 By MS/MS By MS/MS By MS/MS By matching 3 3 2 2 1.1904 1.063 12.864 10 Median 1.3336 1.2278 8.1042 3 0 Median 1.159 0.96537 7.4058 3 0 Median 1.1393 1.0755 0.87953 2 1 Median 1.1525 0.95654 11.488 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 319090000 140970000 178120000 208040000 91017000 117020000 64907000 28775000 36131000 43222000 19829000 23394000 2928000 1351500 1576500 0 0 0 0 0 0 38612 2533 40554 204499;204500;204501;204502;204503;204504;204505;204506;204507;204508 207753;207754;207755;207756;207757;207758;207759;207760;207761;207762 207760 10 YALYDATYETK PYATFVKMLPDKDCRYALYDATYETKESKK KDCRYALYDATYETKESKKEDLVFIFWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 3 0 0 0 11 0 1336.6187 P23528;G3V1A4;E9PK25;E9PP50;E9PQB7;E9PLJ3;Q9Y281 P23528 82 92 CFL1;CFL2 Cofilin-1;Cofilin-2 no no 2 2.1186E-07 168.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 7 5 3 3 4 1 1.1538 1.0337 21.004 23 Median 1.1276 1.0337 8.3174 7 0 Median 1.174 1.0008 4.1099 5 0 Median 1.1501 1.0803 4.8966 3 1 Median 1.2002 0.99762 22.21 3 0 Median 1.4983 1.6413 31.323 4 0 Median 1.5364 1.2507 NaN 1 0 Median 3524700000 1586200000 1938500000 2261600000 1024800000 1236800000 857360000 377660000 479700000 322880000 147890000 174990000 49735000 22141000 27593000 32107000 13322000 18785000 981290 355880 625410 38613 2118;4378 40555 204509;204510;204511;204512;204513;204514;204515;204516;204517;204518;204519;204520;204521;204522;204523;204524;204525;204526;204527;204528;204529;204530;204531 207763;207764;207765;207766;207767;207768;207769;207770;207771;207772;207773;207774;207775;207776;207777;207778;207779;207780;207781;207782;207783;207784;207785;207786;207787;207788;207789;207790;207791;207792;207793;207794;207795;207796;207797;207798;207799;207800;207801;207802 207770 39 YAMEQSIK PLTPEQQEALQKAKKYAMEQSIKSVLVKQT ALQKAKKYAMEQSIKSVLVKQTIAHQQQQL K Y A I K S 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 8 0 968.46372 A0A0J9YVP6;A0A0J9YYL3;A0A0J9YXX5;Q9UHX1;A0A0J9YXJ8;A0A0J9YVR6;E9PQ56;A0A0J9YWM1;H0YEM1;E9PN18;E9PMU7;E9PL19 A0A0J9YVP6 65 72 PUF60 Poly(U)-binding-splicing factor PUF60 yes no 2 0.0035089 91.9 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 1.1665 1.0624 10.686 4 Median 1.1189 1.0828 NaN 1 0 Median 1.5055 1.3 NaN 1 0 Median 1.0602 1.0363 NaN 1 0 Median 1.2162 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14544000 6862100 7681500 1531400 751270 780160 2211800 987480 1224300 9591200 4597900 4993300 1209100 525390 683740 0 0 0 0 0 0 38614 284 40556 204532;204533;204534;204535;204536 207803;207804;207805;207806;207807 207804 5 YAMMFAELK HATLRLCLRLTRDHKYAMMFAELKSTRMIL LTRDHKYAMMFAELKSTRMILNLTQSSGFN K Y A L K S 2 0 0 0 0 0 1 0 0 0 1 1 2 1 0 0 0 0 1 0 0 0 9 0 1102.5191 Q7Z6Z7 Q7Z6Z7 1791 1799 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.0016231 79.474 By MS/MS By matching By matching 2 1 1 0.96302 1.0095 15.04 4 Median 0.92328 0.89531 13.662 2 0 Median 1.3387 1.1673 NaN 1 0 Median 0.94113 1.0335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15496000 7190100 8305400 10757000 5201300 5556000 4233300 1733500 2499800 504970 255340 249640 0 0 0 0 0 0 0 0 0 38615 3253 40557 204537;204538;204539;204540 207808;207809 207809 2 YANEVNSDAGAFK KKWSEALVLYDRVLKYANEVNSDAGAFKNS LKYANEVNSDAGAFKNSLKDLPDVQELITQ K Y A F K N 3 0 2 1 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 1 0 0 13 0 1384.6259 Q9UHB9 Q9UHB9 492 504 SRP68 Signal recognition particle subunit SRP68 yes yes 2 1.9408E-05 127.42 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.1545 1.04 24.321 6 Median 1.1545 1.1011 3.0502 2 1 Median 1.197 1.0036 NaN 1 0 Median 1.2887 1.2996 NaN 1 0 Median 1.1313 0.96259 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76412 0.63492 NaN 1 0 Median 43802000 18710000 25092000 16095000 6966500 9128100 9442100 4157000 5285100 13404000 5242200 8161400 3853000 1704900 2148200 0 0 0 1008700 639420 369260 38616 4274 40558 204541;204542;204543;204544;204545;204546 207810;207811;207812;207813 207812 4 YANMWLEYYNLER ARELWDSIMTRGNAKYANMWLEYYNLERAH AKYANMWLEYYNLERAHGDTQHCRKALHRA K Y A E R A 1 1 2 0 0 0 2 0 0 0 2 0 1 0 0 0 0 1 3 0 0 0 13 0 1763.7977 A0A499FI31;Q15020 A0A499FI31 525 537 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.002783 46.606 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2241 1.1943 11.62 4 Median 1.1276 1.1085 NaN 1 1 Median 1.3178 1.1594 NaN 1 0 Median 1.1371 1.2302 NaN 1 0 Median 1.6216 1.4461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3894500 1685600 2208900 2370300 1007400 1362900 244960 95697 149260 1215200 546940 668230 64045 35581 28464 0 0 0 0 0 0 38617 473 40559 204547;204548;204549;204550 207814;207815;207816 207816 3 YANNSNYKNDVMIR HEFLEFEFRPDGKLRYANNSNYKNDVMIRK RYANNSNYKNDVMIRKEAYVHKSVMEELKR R Y A I R K 1 1 4 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 2 1 0 0 14 1 1700.7941 P61326;Q96A72;F5H6N1 Q96A72 36 49 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2;3 6.1029E-05 78.486 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 1 1.16 1.2225 19.863 6 Median 1.3525 1.3365 6.6564 2 2 Median NaN NaN NaN 0 0 Median 1.0086 1.0463 NaN 1 0 Median 1.2882 1.093 36.844 2 1 Median 1.041 1.1721 NaN 1 0 Median NaN NaN NaN 0 0 Median 38683000 18341000 20342000 19136000 9180900 9955000 0 0 0 10930000 5602600 5327500 5638700 1793600 3845100 2978800 1764100 1214700 0 0 0 38618 2556;3596 40560 204551;204552;204553;204554;204555;204556 207817;207818;207819;207820;207821;207822;207823;207824;207825 207820 9 YANNSNYKNDVMIRK HEFLEFEFRPDGKLRYANNSNYKNDVMIRK YANNSNYKNDVMIRKEAYVHKSVMEELKRI R Y A R K E 1 1 4 1 0 0 0 0 0 1 0 2 1 0 0 1 0 0 2 1 0 0 15 2 1828.889 P61326;Q96A72;F5H6N1 Q96A72 36 50 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3;4 0.00020701 47.666 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.1061 1.2247 16.886 7 Median 1.1799 1.2403 3.2554 2 0 Median NaN NaN NaN 0 0 Median 1.1469 1.2944 7.8195 2 0 Median 1.0069 0.83056 NaN 1 0 Median 1.0453 1.155 13.892 2 0 Median NaN NaN NaN 0 0 Median 13982000 6081300 7900600 8809700 3999100 4810600 0 0 0 3146000 1037900 2108100 571580 277520 294060 1454700 766790 687920 0 0 0 38619 2556;3596 40561 204557;204558;204559;204560;204561;204562;204563 207826;207827;207828;207829 207827 4 YAPENLDEQIKK EAYLQNLFSLSQLDKYAPENLDEQIKKVSQ LDKYAPENLDEQIKKVSQQILEKRAYICAH K Y A K K V 1 0 1 1 0 1 2 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 12 1 1446.7355 Q9H845;H0Y8Z9 Q9H845 589 600 ACAD9 Acyl-CoA dehydrogenase family member 9, mitochondrial yes no 3 0.0022806 56.205 By MS/MS 1 0.58901 0.55217 NaN 1 Median 0.58901 0.55217 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13422000 9795300 3626400 13422000 9795300 3626400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38620 3988 40562 204564 207830 207830 1 YAPGDAVEK SARTLYEVSLQESIRYAPGDAVEKWLNDLL LQESIRYAPGDAVEKWLNDLLCLDCLNITR R Y A E K W 2 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 0 948.45526 Q9H0A0;A0A087WV29 Q9H0A0 471 479 NAT10 N-acetyltransferase 10 yes no 2 0.0038212 62.582 By MS/MS By MS/MS By matching By matching 1 2 1 2 1.1423 0.96459 13.184 6 Median NaN NaN NaN 0 0 Median 1.1597 0.98521 NaN 1 0 Median 0.80598 0.84788 6.3572 2 0 Median 1.1252 0.94441 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3276 1.1255 3.9066 2 0 Median 10018000 4623300 5395000 0 0 0 6058900 2763400 3295600 2074100 1099700 974420 749420 290300 459120 0 0 0 1135800 469990 665850 38621 3921 40563 204565;204566;204567;204568;204569;204570 207831;207832;207833;207834 207833 4 YAPLGWSK FLLAWFHAIIQERLRYAPLGWSKKYEFGES IIQERLRYAPLGWSKKYEFGESDLRSACDT R Y A S K K 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 0 0 0 8 0 920.4756 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4196 4203 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.018247 68.214 By MS/MS By MS/MS By MS/MS 1 1 1 0.96988 1.035 14.329 3 Median 0.83592 0.83834 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.96988 1.035 NaN 1 1 Median 1.1343 1.1021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39381000 19640000 19741000 15548000 7907100 7640600 0 0 0 20443000 10166000 10278000 3390300 1567600 1822700 0 0 0 0 0 0 38622 2865 40564 204571;204572;204573 207835;207836;207837;207838 207836 4 YAPLHLVPLIER EGERLDAKMKRLESKYAPLHLVPLIERLGT ESKYAPLHLVPLIERLGTPQQIAIAREGDL K Y A E R L 1 1 0 0 0 0 1 0 1 1 3 0 0 0 2 0 0 0 1 1 0 0 12 0 1419.8238 E7EVJ5;H7C229;E7EW33;Q96F07;H0YL50;Q7L576 Q7L576 1054 1065 CYFIP2;CYFIP1 Cytoplasmic FMR1-interacting protein 2;Cytoplasmic FMR1-interacting protein 1 no no 2;3 0.0014524 52.79 By MS/MS By matching By MS/MS By matching By matching 2 1 2 2 1 0.875 0.83033 21.92 8 Median 0.75652 0.7467 23.808 2 0 Median 0.90032 0.79586 NaN 1 0 Median 0.84137 0.92502 3.745 2 0 Median 0.94366 0.82534 6.8476 2 0 Median NaN NaN NaN 0 0 Median 0.5959 0.49578 NaN 1 0 Median 20188000 11140000 9047900 4392000 2497200 1894800 202840 98006 104840 14900000 8191600 6708500 597100 293860 303240 0 0 0 95604 59053 36551 38623 3224;897 40565 204574;204575;204576;204577;204578;204579;204580;204581 207839;207840;207841;207842 207840 4 YAPSEAGLHEMDIR QPTITDNKDGTVTVRYAPSEAGLHEMDIRY RYAPSEAGLHEMDIRYDNMHIPGSPLQFYV R Y A I R Y 2 1 0 1 0 0 2 1 1 1 1 0 1 0 1 1 0 0 1 0 0 0 14 0 1587.7351 P21333;H0Y5F3;Q60FE5;A0A087WWY3 P21333 1832 1845 FLNA Filamin-A no no 2;3 2.1774E-08 131.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 11 7 3 1 2 0.89185 0.83967 18.379 31 Median 0.98909 0.95037 6.451 8 0 Median 0.88302 0.72408 13.531 10 0 Median 0.84886 0.92517 13.92 7 2 Median 0.82565 0.72602 13.26 3 0 Median 1.2967 1.3476 NaN 1 0 Median 1.0448 0.85791 5.6963 2 0 Median 1337200000 692380000 644840000 480100000 237900000 242200000 760280000 403890000 356390000 82303000 43827000 38476000 7430700 3969700 3461000 6462500 2419800 4042600 639780 371340 268440 38624 2088;3120 40566;40567 204582;204583;204584;204585;204586;204587;204588;204589;204590;204591;204592;204593;204594;204595;204596;204597;204598;204599;204600;204601;204602;204603;204604;204605;204606;204607;204608;204609;204610;204611;204612;204613 207843;207844;207845;207846;207847;207848;207849;207850;207851;207852;207853;207854;207855;207856;207857;207858;207859;207860;207861;207862;207863;207864;207865;207866;207867;207868;207869;207870;207871;207872;207873;207874;207875;207876;207877;207878;207879;207880;207881;207882;207883;207884;207885;207886;207887;207888;207889 207850 855 47 YAPSGFYIASGDVSGK ADIYTEHAHQVVVAKYAPSGFYIASGDVSG APSGFYIASGDVSGKLRIWDTTQKEHLLKY K Y A G K L 2 0 0 1 0 0 0 3 0 1 0 1 0 1 1 3 0 0 2 1 0 0 16 0 1617.7675 O75083;D6RD66 O75083 66 81 WDR1 WD repeat-containing protein 1 yes no 2 9.6073E-07 93.011 By MS/MS By matching By MS/MS By MS/MS By matching 4 2 1 1 1 1.0558 0.98646 19.945 9 Median 1.0255 0.97099 18.986 4 0 Median 1.034 0.88698 24.924 2 0 Median 1.1219 1.0903 NaN 1 0 Median 1.0558 0.90078 NaN 1 0 Median 1.1313 1.3356 NaN 1 0 Median NaN NaN NaN 0 0 Median 76909000 39458000 37451000 53157000 27787000 25370000 9709700 4903200 4806400 11435000 5581000 5854100 1971700 965210 1006500 635620 222120 413500 0 0 0 38625 1643 40568 204614;204615;204616;204617;204618;204619;204620;204621;204622 207890;207891;207892;207893;207894;207895;207896;207897;207898 207893 9 YAPSYYHVMPK EIQESRKKRGCSSSKYAPSYYHVMPKQNST SSSKYAPSYYHVMPKQNSTLVGDKRSDPEQ K Y A P K Q 1 0 0 0 0 0 0 0 1 0 0 1 1 0 2 1 0 0 3 1 0 0 11 0 1354.638 Q6PL18;A0A0B4J211 Q6PL18 1118 1128 ATAD2 ATPase family AAA domain-containing protein 2 yes no 2;3 0.00079829 62.582 By MS/MS By matching 3 1 0.59711 0.62569 36.106 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.626 0.65554 6.6437 3 0 Median 0.37694 0.3149 NaN 1 0 Median 14796000 9116600 5679500 0 0 0 0 0 0 0 0 0 0 0 0 14284000 8791100 5493400 511640 325490 186150 38626 3177 40569 204623;204624;204625;204626 207899;207900 207900 2 YAPTEAQLNAVDALIDSMSLAK DLRQYMFSSLKNSKKYAPTEAQLNAVDALI LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K Y A A K K 5 0 1 2 0 1 1 0 0 1 3 1 1 0 1 2 1 0 1 1 0 0 22 0 2320.1621 P13010 P13010 444 465 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.0094115 20.256 By MS/MS By matching By matching By matching 2 1 2 1 0.85829 0.86051 13.5 6 Median 0.9671 0.93751 5.4826 2 0 Median 1.2136 1.0972 NaN 1 0 Median 0.74354 0.7836 0.64645 2 0 Median NaN NaN NaN 0 0 Median 0.79676 0.82105 NaN 1 0 Median NaN NaN NaN 0 0 Median 4582600 2318900 2263700 3058700 1468100 1590600 399960 202220 197740 746810 421330 325470 0 0 0 377160 227300 149860 0 0 0 38627 1986 40570 204627;204628;204629;204630;204631;204632 207901 207901 1 YAPTEVGLHEMHIK TPEIVDNKDGTVTVRYAPTEVGLHEMHIKY RYAPTEVGLHEMHIKYMGSHIPESPLQFYV R Y A I K Y 1 0 0 0 0 0 2 1 2 1 1 1 1 0 1 0 1 0 1 1 0 0 14 0 1623.8079 O75369;E7EN95 O75369 1788 1801 FLNB Filamin-B yes no 2;3;4 2.95E-08 127.51 By MS/MS By MS/MS By MS/MS By matching 9 7 3 3 1.0479 0.99283 11.694 22 Median 1.07 1.0622 9.5226 9 0 Median 1.0187 0.90307 8.3915 7 0 Median 0.90308 0.99596 7.4424 3 1 Median 1.2153 1.1557 12.07 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 405900000 193520000 212380000 216700000 100800000 115900000 165380000 79811000 85571000 21357000 11862000 9495100 2453700 1041500 1412200 0 0 0 0 0 0 38628 1664 40571;40572 204633;204634;204635;204636;204637;204638;204639;204640;204641;204642;204643;204644;204645;204646;204647;204648;204649;204650;204651;204652;204653;204654 207902;207903;207904;207905;207906;207907;207908;207909;207910;207911;207912;207913;207914;207915;207916;207917;207918;207919;207920;207921;207922;207923;207924;207925 207922 532 24 YAQAGFEGFK FGSEEQLLPVEKLPKYAQAGFEGFKTLNRI EKLPKYAQAGFEGFKTLNRIQSKLYRAALE K Y A F K T 2 0 0 0 0 1 1 2 0 0 0 1 0 2 0 0 0 0 1 0 0 0 10 0 1116.524 O75643;A0A494C1A5 O75643 470 479 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00033784 115.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 1 1.1122 1.0475 8.7828 10 Median 1.1271 1.1071 5.7242 2 0 Median 1.0858 0.96224 NaN 1 0 Median 0.91207 0.98996 5.8828 2 0 Median 1.2015 1.0791 12.844 3 0 Median 1.0594 1.1094 NaN 1 0 Median 1.1709 1.0032 NaN 1 0 Median 110690000 56087000 54598000 16299000 7562600 8736000 8685700 4601000 4084600 54658000 29429000 25229000 11843000 5681800 6161600 15764000 7257300 8506300 3436300 1555500 1880800 38629 1688 40573 204655;204656;204657;204658;204659;204660;204661;204662;204663;204664 207926;207927;207928;207929;207930;207931;207932;207933;207934;207935;207936;207937;207938;207939 207932 14 YAQGFLPEK PVGRSSLLVGNLKKKYAQGFLPEKLPQQDH GNLKKKYAQGFLPEKLPQQDHTTTTDSEME K Y A E K L 1 0 0 0 0 1 1 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1051.5338 Q8IXK0;A0A0A0MSI2;B3KPJ4 Q8IXK0 601 609 PHC2 Polyhomeotic-like protein 2 yes no 2 0.0011692 84.498 By MS/MS 1 0.77957 0.80779 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77957 0.80779 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9131600 4593600 4538000 0 0 0 0 0 0 9131600 4593600 4538000 0 0 0 0 0 0 0 0 0 38630 180 40574 204665 207940 207940 1 YAQYQASSFQESLREENEKR IWHCESNRSHTTIAKYAQYQASSFQESLRE ASSFQESLREENEKRSHHKDHSDSESTSSD K Y A K R S 2 2 1 0 0 3 4 0 0 0 1 1 0 1 0 3 0 0 2 0 0 0 20 2 2462.1462 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;O14607;F5H3N7;A0A087X0Y2;A0A087X2I9;F5H8B4;A0A096LPD8;A0A087X248;F5GWV3;H0Y5J3;H0Y6I7 O15550 1035 1054 KDM6A;UTY Lysine-specific demethylase 6A;Histone demethylase UTY yes no 4 6.0497E-06 46.494 By MS/MS 1 1.0597 1.1947 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0597 1.1947 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15712000 6539700 9172600 0 0 0 0 0 0 15712000 6539700 9172600 0 0 0 0 0 0 0 0 0 38631 111 40575 204666 207941 207941 1 YASETLQAQSEEAR EEALVRRKKMELLQKYASETLQAQSEEARR KYASETLQAQSEEARRLLGY__________ K Y A A R R 3 1 0 0 0 2 3 0 0 0 1 0 0 0 0 2 1 0 1 0 0 0 14 0 1581.7271 Q9ULR0 Q9ULR0 267 280 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 2 6.5451E-08 101.93 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.0626 0.91348 27.618 5 Median NaN NaN NaN 0 0 Median 0.85715 0.73077 NaN 1 0 Median 0.69845 0.68687 NaN 1 1 Median 1.0626 0.94109 NaN 1 0 Median 1.3032 1.3861 NaN 1 0 Median 1.1084 0.91348 NaN 1 0 Median 16685000 8096200 8588900 0 0 0 1535600 725670 809920 7368500 4177000 3191400 1494300 705560 788710 3441400 1337700 2103700 2845500 1150300 1695200 38632 4327 40576 204667;204668;204669;204670;204671 207942;207943;207944;207945;207946;207947;207948 207948 7 YASETLQAQSEEARR EEALVRRKKMELLQKYASETLQAQSEEARR YASETLQAQSEEARRLLGY___________ K Y A R R L 3 2 0 0 0 2 3 0 0 0 1 0 0 0 0 2 1 0 1 0 0 0 15 1 1737.8282 Q9ULR0 Q9ULR0 267 281 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 3 7.7959E-05 52.265 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1.1132 0.97907 24.489 5 Median NaN NaN NaN 0 0 Median 0.7267 0.67865 NaN 1 0 Median 0.84605 0.88306 NaN 1 0 Median 1.3057 1.1494 NaN 1 0 Median 1.1942 1.2746 NaN 1 0 Median 1.1132 0.97907 NaN 1 0 Median 10382000 4156700 6225200 0 0 0 480440 242590 237840 2299300 1047000 1252300 1412300 542320 869980 4686000 1725900 2960200 1503800 598890 904890 38633 4327 40577 204672;204673;204674;204675;204676 207949;207950;207951 207949 3 YASFQVENDQER TLSVVPQLTGGSVYKYASFQVENDQERFLS VYKYASFQVENDQERFLSDLRRDVQKVVGF K Y A E R F 1 1 1 1 0 2 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 12 0 1484.6532 P53992;G5EA31 P53992 723 734 SEC24C Protein transport protein Sec24C yes no 2 5.4573E-06 161.63 By MS/MS By MS/MS By matching By MS/MS 1 2 3 2 1.1266 0.96765 24.026 8 Median 0.9666 0.93137 NaN 1 0 Median 1.0638 0.93341 1.8476 2 0 Median 1.3101 1.3806 42.295 3 0 Median 1.2025 1.0275 5.248 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31828000 15543000 16286000 10912000 5616200 5296200 5748600 2576200 3172400 9356400 4587800 4768600 5810800 2762500 3048400 0 0 0 0 0 0 38634 1134 40578 204677;204678;204679;204680;204681;204682;204683;204684 207952;207953;207954;207955;207956;207957;207958 207952 7 YASINAHLGIEQSR HIPYREDKNLTGTARYASINAHLGIEQSRR RYASINAHLGIEQSRRDDMESLGYVLMYFN R Y A S R R 2 1 1 0 0 1 1 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 14 0 1557.79 U3KPX3;A0A590UJ43;P48729;D6REM4;E7ETM0;H0Y9X2;U3KQK7;Q8N752 U3KPX3 187 200 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 3 4.4833E-05 79.639 By matching By MS/MS By MS/MS By matching By matching 1 1 1 1 2 1.0303 0.93515 22.989 6 Median 0.83198 0.8263 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9989 0.97258 NaN 1 0 Median 1.2455 1.0607 NaN 1 0 Median 1.0637 1.0987 NaN 1 0 Median 0.87605 0.72547 30.357 2 0 Median 35798000 17638000 18160000 7518700 4045300 3473400 0 0 0 14131000 7333800 6797100 5835100 2543800 3291300 6213500 2680300 3533200 2099700 1034300 1065300 38635 481 40579 204685;204686;204687;204688;204689;204690 207959;207960;207961 207960 3 YASINTHLGIEQSR HIPYRENKNLTGTARYASINTHLGIEQSRR RYASINTHLGIEQSRRDDLESLGYVLMYFN R Y A S R R 1 1 1 0 0 1 1 1 1 2 1 0 0 0 0 2 1 0 1 0 0 0 14 0 1587.8005 P49674;H0Y645;B0QY35;B0QY34;J3QQI9;B0QY36;P48730;H7BYT1 P49674 179 192 CSNK1E;CSNK1D Casein kinase I isoform epsilon;Casein kinase I isoform delta no no 3 0.050657 28.546 By matching By MS/MS By matching By matching By matching 1 1 1 1 1 1.0817 1.179 41.723 5 Median 0.79647 0.79344 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0817 1.179 NaN 1 0 Median 0.99842 0.86287 NaN 1 0 Median 2.0979 2.2559 NaN 1 0 Median 1.5701 1.3705 NaN 1 0 Median 20136000 10231000 9905400 3413500 1954300 1459200 0 0 0 10978000 5797900 5180400 2818300 1441300 1376900 2372200 802840 1569400 553720 234240 319480 38636 2390;1248 40580 204691;204692;204693;204694;204695 207962 207962 0 YASNAVSEALIR LFHKGPVIKVNSKQRYASNAVSEALIREVA KQRYASNAVSEALIREVANKVKVPLQDLMV R Y A I R E 3 1 1 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 1 0 0 12 0 1292.6725 E7EMB6;A0A024R442;E7ETB3;Q9ULA0 E7EMB6 316 327 DNPEP Aspartyl aminopeptidase yes no 2 0.00067049 62.303 By MS/MS By matching 1 1 1.1796 1.076 9.2953 2 Median 1.0414 1.0075 NaN 1 0 Median 1.3362 1.1491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9914300 3883800 6030500 7536300 2984700 4551600 2378000 899090 1478900 0 0 0 0 0 0 0 0 0 0 0 0 38637 3 40581 204696;204697 207963 207963 1 YASSANLHLPK DKLNNELLAKFLEKKYASSANLHLPKLSIS LEKKYASSANLHLPKLSISETYDLKSVLGD K Y A P K L 2 0 1 0 0 0 0 0 1 0 2 1 0 0 1 2 0 0 1 0 0 0 11 0 1199.6299 CON__P34955 CON__P34955 302 312 yes yes 2;3 0.0013466 72.325 By MS/MS By MS/MS 2 4 0.10212 0.091068 148.29 6 Median 0.04461 0.042018 106.75 2 2 Median 0.25516 0.21159 143.13 4 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 89231000 64201000 25030000 27745000 27024000 720880 61486000 37177000 24309000 0 0 0 0 0 0 0 0 0 0 0 0 + 38638 763 40582 204698;204699;204700;204701;204702;204703 207964;207965;207966;207967;207968;207969;207970 207967 7 YASWAASQINR SNPKASAKTKKDNMKYASWAASQINRAYQF DNMKYASWAASQINRAYQFAGRSKKETKYS K Y A N R A 3 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 0 11 0 1265.6153 Q15006 Q15006 256 266 EMC2 ER membrane protein complex subunit 2 yes yes 2 0.00015771 111.46 By MS/MS By MS/MS By MS/MS 1 1 1 1.0684 0.99884 26.528 3 Median 1.0684 0.99884 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84555 0.83082 NaN 1 0 Median 1.6808 1.4017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41017000 19674000 21344000 31243000 14646000 16597000 0 0 0 7614400 4171100 3443400 2160200 856860 1303300 0 0 0 0 0 0 38639 2909 40583 204704;204705;204706 207971;207972;207973;207974;207975 207972 5 YATALYSAASK KLVRPPVQVYGIEGRYATALYSAASKQNKL IEGRYATALYSAASKQNKLEQVEKELLRVA R Y A S K Q 4 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 2 0 0 0 11 0 1144.5764 P48047;A0A494C0K9;H7C0C1;H7C086 P48047 41 51 ATP5O ATP synthase subunit O, mitochondrial yes no 2 8.6493E-05 150.35 By MS/MS By MS/MS By MS/MS By matching 1 4 2 1 1.0614 1.0228 48.04 8 Median 1.0532 0.97118 NaN 1 0 Median 1.2091 1.0091 67.967 4 0 Median 0.969 0.97585 13.977 2 0 Median 1.526 1.2615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120060000 54834000 65225000 80278000 37808000 42470000 26756000 11619000 15136000 11696000 4940100 6756000 1328900 466040 862880 0 0 0 0 0 0 38640 2358 40584 204707;204708;204709;204710;204711;204712;204713;204714 207976;207977;207978;207979;207980;207981;207982;207983;207984 207983 9 YATDLLSVALNR DFQHSKGKEPYSSSKYATDLLSVALNRNFN SSKYATDLLSVALNRNFNQQGLYSNVACPG K Y A N R N 2 1 1 1 0 0 0 0 0 0 3 0 0 0 0 1 1 0 1 1 0 0 12 0 1334.7194 P56937;V9GYN3 P56937 198 209 HSD17B7 3-keto-steroid reductase yes no 2 0.0047583 42.743 By MS/MS By matching By matching 2 1 1 1.1256 0.93553 30.573 4 Median 0.89318 0.8659 52.274 2 0 Median 1.1094 0.95846 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1421 0.91315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8899900 4996200 3903700 8601400 4851800 3749600 216630 100140 116490 0 0 0 81905 44305 37600 0 0 0 0 0 0 38641 2515 40585 204715;204716;204717;204718 207985 207985 1 YATDTFAGLCHQLTNALVER QVQLFISTCNGEHIRYATDTFAGLCHQLTN FAGLCHQLTNALVERKQPLRGIGILKQAID R Y A E R K 3 1 1 1 1 1 1 1 1 0 3 0 0 1 0 0 3 0 1 1 0 0 20 0 2279.1005 Q9UNS2;H7C3P9;C9JLV5;J3QKR0;K7ES36 Q9UNS2 95 114 COPS3 COP9 signalosome complex subunit 3 yes no 3 0.0088072 21.803 By MS/MS 1 1.6155 1.4 NaN 1 Median NaN NaN NaN 0 0 Median 1.6155 1.4 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 862860 343000 519850 0 0 0 862860 343000 519850 0 0 0 0 0 0 0 0 0 0 0 0 38642 4350 40586 204719 207986 207986 1 YATGENTVFVDTK FCSIEGEWNGVMYAKYATGENTVFVDTKKL AKYATGENTVFVDTKKLPIIKKKVRKLEDQ K Y A T K K 1 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 3 0 1 2 0 0 13 0 1443.6882 Q96SU4;A0A096LPC8 Q96SU4 633 645 OSBPL9 Oxysterol-binding protein-related protein 9 yes no 2 7.4802E-07 103.34 By MS/MS By matching 1 1 1.1283 1.0264 32.267 2 Median 0.8783 0.81697 NaN 1 0 Median 1.4494 1.2894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7431300 3990300 3441000 5997500 3315300 2682200 1433800 675030 758810 0 0 0 0 0 0 0 0 0 0 0 0 38643 3738 40587 204720;204721 207987;207988 207988 2 YATLATVSR LPPNVRIMFEVQDLKYATLATVSRCGMVWF EVQDLKYATLATVSRCGMVWFSEDVLSTDM K Y A S R C 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 1 1 0 0 9 0 980.5291 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 2350 2358 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 4.7159E-05 152.63 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1 2 1.2315 1.0622 35.389 8 Median 1.0178 0.99152 NaN 1 0 Median 1.126 0.89914 NaN 1 0 Median 1.2967 1.3996 44.435 2 0 Median 1.2658 1.1037 NaN 1 0 Median 2.2816 2.3871 NaN 1 0 Median 1.272 1.0737 11.362 2 0 Median 116070000 56104000 59966000 16943000 8198400 8744900 52549000 26538000 26011000 24386000 11939000 12447000 10622000 4524300 6097900 1889200 623240 1266000 9680300 4281200 5399100 38644 2865 40588 204722;204723;204724;204725;204726;204727;204728;204729 207989;207990;207991;207992;207993;207994;207995;207996;207997;207998;207999;208000 207995 12 YATLPNIMK LPAVVTADLRLNEPRYATLPNIMKAKKKKI RLNEPRYATLPNIMKAKKKKIEVIKPGDLG R Y A M K A 1 0 1 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 1 0 0 0 9 0 1049.558 P38117;M0QY67 P38117 192 200 ETFB Electron transfer flavoprotein subunit beta yes no 2 0.00084619 94.662 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.088 0.96622 7.6126 4 Median 0.9671 0.89383 NaN 1 0 Median 1.1695 0.9813 NaN 1 0 Median 1.0122 0.95137 NaN 1 0 Median 1.3007 1.0732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 57097000 29447000 27650000 41938000 22202000 19736000 6709100 2985700 3723300 7647900 3931700 3716300 802150 327810 474340 0 0 0 0 0 0 38645 2272 40589 204730;204731;204732;204733 208001;208002;208003;208004;208005 208002 5 YAVFNEDGSLAELK ILPASKEEGKKLKKRYAVFNEDGSLAELKG RYAVFNEDGSLAELKGFEVKRRGELQLIKI R Y A L K G 2 0 1 1 0 0 2 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 14 0 1554.7566 Q07864;F5H1D6 Q07864 956 969 POLE DNA polymerase epsilon catalytic subunit A;DNA polymerase yes no 2 0.001615 61.353 By MS/MS 1 1.1957 1.3325 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1957 1.3325 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3968600 1948200 2020400 0 0 0 0 0 0 3968600 1948200 2020400 0 0 0 0 0 0 0 0 0 38646 1020 40590 204734 208006 208006 1 YAVIGADLR EDTLQMDGHILDSKRYAVIGADLRDLSELE ILDSKRYAVIGADLRDLSELEEKLKKCNMN R Y A L R D 2 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 976.53418 I3L4A2;Q9UIC8 I3L4A2 55 63 LCMT1 Leucine carboxyl methyltransferase 1 yes no 2 0.039605 33.797 By matching By MS/MS 1 1 1.5425 1.3854 24.34 2 Median 1.7188 1.6456 NaN 1 0 Median 1.3843 1.1663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5295300 2181600 3113700 3369900 1402400 1967500 1925400 779200 1146200 0 0 0 0 0 0 0 0 0 0 0 0 38647 1291 40591 204735;204736 208007 208007 1 YAVLYQPLFDK IEAKFYEEVHDLERKYAVLYQPLFDKRFEI LERKYAVLYQPLFDKRFEIINAIYEPTEEE K Y A D K R 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 11 0 1355.7125 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8VXI6;F8VUX1;F8W543;F8VRJ2;F8VVB5 F8W020 106 116 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2 0.00018232 77.677 By matching By MS/MS By MS/MS 1 1 2 1.0267 0.98763 26.159 4 Median 1.0079 0.95017 NaN 1 0 Median 1.0145 0.86465 NaN 1 0 Median 1.257 1.2671 29.769 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15343000 6952900 8390300 5371900 2600800 2771000 4050500 2075000 1975500 5920800 2277000 3643700 0 0 0 0 0 0 0 0 0 38648 1033 40592 204737;204738;204739;204740 208008;208009;208010;208011 208010 4 YAVLYQPLFDKR IEAKFYEEVHDLERKYAVLYQPLFDKRFEI ERKYAVLYQPLFDKRFEIINAIYEPTEEEC K Y A K R F 1 1 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 12 1 1511.8136 F8W020;F8VY35;F8W0J6;F5H4R6;H0YIV4;P55209;H0YHC3;F8W118;F8VV59;B7Z9C2;H0YH88;F8W543;F8VRJ2;F8VVB5 F8W020 106 117 NAP1L1 Nucleosome assembly protein 1-like 1 yes no 2;3 4.7656E-06 110.87 By MS/MS By matching By MS/MS By matching By matching 5 2 2 3 1 1.0703 0.99039 18.756 13 Median 0.90996 0.90552 20.457 5 0 Median 1.036 0.94547 6.5649 2 0 Median 0.98154 1.044 33.422 2 1 Median 1.1138 1.0451 11.996 3 0 Median 1.2556 1.3031 NaN 1 0 Median NaN NaN NaN 0 0 Median 62752000 32121000 30630000 48702000 25767000 22935000 1576400 763510 812920 9684100 4509900 5174200 1122500 504320 618160 1666700 576960 1089800 0 0 0 38649 1033 40593 204741;204742;204743;204744;204745;204746;204747;204748;204749;204750;204751;204752;204753 208012;208013;208014;208015;208016;208017;208018 208015 7 YAVNVALQK QESLSVLRSSNEFMRYAVNVALQKVQQLKE SNEFMRYAVNVALQKVQQLKETGHVSGPDG R Y A Q K V 2 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1004.5655 Q9NVI1 Q9NVI1 841 849 FANCI Fanconi anemia group I protein yes yes 2 0.042971 68.422 By MS/MS By matching By matching By matching By matching 1 1 1 1 2 1.1796 1.0818 32.359 6 Median 1.2513 1.2369 NaN 1 0 Median 2.4555 2.1987 NaN 1 0 Median 1.0789 1.1697 NaN 1 0 Median 1.1591 0.9742 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1242 0.95172 7.0626 2 0 Median 11328000 4666400 6661100 3238900 1187700 2051100 174980 55645 119330 5018900 2243600 2775300 1441600 527620 914030 0 0 0 1453200 651810 801390 38650 4132 40594 204754;204755;204756;204757;204758;204759 208019 208019 0 YAVPSAGLR NFVLKAIRPQIDLKRYAVPSAGLRLFALHA QIDLKRYAVPSAGLRLFALHASQFSTCLLD R Y A L R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 0 932.50797 P78527 P78527 265 273 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00025668 139.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 1 2 1.1268 0.97009 13.702 9 Median 0.8958 0.8656 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.82278 0.87456 1.0747 2 0 Median 1.2468 1.0639 14.041 3 0 Median 0.83236 0.85365 NaN 1 0 Median 1.2261 1.0039 4.8471 2 0 Median 241290000 122490000 118800000 52696000 26957000 25739000 0 0 0 126300000 67235000 59063000 30744000 13284000 17460000 13266000 7125300 6140500 18288000 7890000 10398000 38651 2647 40595 204760;204761;204762;204763;204764;204765;204766;204767;204768;204769;204770 208020;208021;208022;208023;208024;208025;208026;208027;208028;208029;208030;208031 208029 12 YAVSMAR KSGNLTEDDKHNNAKYAVSMARRIGARVYA DDKHNNAKYAVSMARRIGARVYALPEDLVE K Y A A R R 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 7 0 796.39016 P13797;A0A0A0MSQ0 P13797 588 594 PLS3 Plastin-3 yes no 2 0.022643 73.039 By MS/MS By MS/MS By MS/MS 1 2 1 2.319 2.0017 37.455 3 Plateau 2.1671 2.0496 NaN 1 1 Median 1.679 1.456 45.014 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65022000 2716500 62305000 18876000 918120 17958000 44128000 1798400 42330000 2017500 0 2017500 0 0 0 0 0 0 0 0 0 38652 1995 40596 204771;204772;204773;204774 208032;208033;208034;208035 208032 4 YAVTTGDHGIIR DESGVFIYTTSNHIKYAVTTGDHGIIRTLD HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN K Y A I R T 1 1 0 1 0 0 0 2 1 2 0 0 0 0 0 0 2 0 1 1 0 0 12 0 1301.6728 P53621;A0A3B3IT15;A0A3B3IS84;A0A3B3ISC6;A0A3B3IU89 P53621 551 562 COPA Coatomer subunit alpha;Xenin;Proxenin yes no 2;3 3.7171E-06 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 1 1.2788 1.2529 19.244 8 Median 1.291 1.2433 9.9052 3 1 Plateau 1.3038 1.0777 4.3148 2 0 Median 1.4488 1.5931 24.281 2 1 Median 1.6266 1.3823 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 111930000 49798000 62133000 28875000 13571000 15305000 69092000 30713000 38379000 9946300 4134500 5811800 4016700 1379600 2637100 0 0 0 0 0 0 38653 2473 40597 204775;204776;204777;204778;204779;204780;204781;204782;204783 208036;208037;208038;208039;208040;208041;208042;208043;208044;208045 208037 10 YAWQGVALLPFVDER DFYPEDFAIDLNGKKYAWQGVALLPFVDER YAWQGVALLPFVDERRLRAALEEVYPDLTP K Y A E R R 2 1 0 1 0 1 1 1 0 0 2 0 0 1 1 0 0 1 1 2 0 0 15 0 1762.9043 Q9H0D6 Q9H0D6 642 656 XRN2 5-3 exoribonuclease 2 yes yes 2 5.7837E-07 87.184 By MS/MS By MS/MS By MS/MS By MS/MS 2 3 3 1 0.82888 0.87068 18.546 9 Median 0.83009 0.81996 16.034 2 1 Median 0.80691 0.70026 29.123 3 1 Median 0.84665 0.87321 10.544 3 0 Median NaN NaN NaN 0 0 Median 0.82888 0.87068 NaN 1 0 Median NaN NaN NaN 0 0 Median 20752000 10847000 9905100 3456200 1839700 1616600 3088000 1486900 1601100 9852800 5180300 4672400 0 0 0 4355300 2340300 2015000 0 0 0 38654 3924 40598 204784;204785;204786;204787;204788;204789;204790;204791;204792 208046;208047;208048;208049;208050;208051;208052;208053 208053 8 YAWVLDK KFEKEAAEMGKGSFKYAWVLDKLKAERERG EMGKGSFKYAWVLDKLKAERERGITIDISL K Y A D K L 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 7 0 893.4647 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 P68104 56 62 EEF1A1;EEF1A1P5;EEF1A2 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha;Elongation factor 1-alpha 2 no no 2 0.049819 40.268 By matching By MS/MS By matching 1 1 1 1.0102 0.94761 3.0339 3 Median NaN NaN NaN 0 0 Median 1.0898 0.96337 NaN 1 0 Median 0.96404 0.94761 NaN 1 0 Median 1.0102 0.90834 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18037000 8566100 9470700 0 0 0 666080 283010 383070 5649400 2684400 2965000 11721000 5598700 6122500 0 0 0 0 0 0 38655 2632;404 40599 204793;204794;204795 208054;208055 208054 2 YAYYDTER PGRTMGVMFTPLTVKYAYYDTERIGVDLIM FTPLTVKYAYYDTERIGVDLIMKTCFSPNR K Y A E R I 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 8 0 1079.456 O00303 O00303 239 246 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.0023933 117.17 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1 1.2011 1.0838 15.326 6 Median 1.1876 1.1338 NaN 1 0 Median 1.309 1.114 10.27 2 0 Median 1.2147 1.2192 NaN 1 0 Median 1.0367 0.89724 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98685 0.84518 NaN 1 0 Median 33238000 14963000 18275000 11474000 5236500 6237800 10979000 4642000 6337400 3953000 1680700 2272400 5770800 2913300 2857400 0 0 0 1060000 490200 569830 38656 1457 40600 204796;204797;204798;204799;204800;204801 208056;208057;208058;208059;208060;208061;208062 208057 7 YDAFGEDSSSAMGVENR KISRMLAAKTVLAIRYDAFGEDSSSAMGVE AFGEDSSSAMGVENRAKLEARLRTLEDRGI R Y D N R A 2 1 1 2 0 0 2 2 0 0 0 0 1 1 0 3 0 0 1 1 0 0 17 0 1833.7476 Q9Y2X3 Q9Y2X3 372 388 NOP58 Nucleolar protein 58 yes yes 2 1.4142E-18 176.05 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 4 6 3 1.1167 1.084 18.663 16 Median 1.1655 1.1156 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0553 1.0439 1.5012 2 0 Median 1.4835 1.2661 33.973 4 0 Median 0.96507 1.0055 9.2679 6 0 Median 1.3577 1.1695 9.9789 3 0 Median 173510000 81235000 92272000 8397200 4335300 4061800 0 0 0 78200000 35455000 42745000 7752700 2970400 4782300 73262000 35870000 37392000 5894900 2604100 3290800 38657 4396 40601;40602 204802;204803;204804;204805;204806;204807;204808;204809;204810;204811;204812;204813;204814;204815;204816;204817 208063;208064;208065;208066;208067;208068;208069;208070;208071;208072;208073;208074;208075;208076;208077;208078;208079;208080 208069 1964 18 YDAFLASESLIK KLNKNKKLVKKLAKKYDAFLASESLIKQIP AKKYDAFLASESLIKQIPRILGPGLNKAGK K Y D I K Q 2 0 0 1 0 0 1 0 0 1 2 1 0 1 0 2 0 0 1 0 0 0 12 0 1355.6973 P62906 P62906 107 118 RPL10A 60S ribosomal protein L10a yes yes 2 4.28E-06 104.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 1 3 1 1.1687 1.0729 13.059 10 Median 1.1847 1.095 NaN 1 0 Median 1.1539 0.96333 12.503 3 0 Median 1.1971 1.1265 NaN 1 0 Median 1.3226 1.094 NaN 1 0 Median 1.0994 1.1234 19.328 3 0 Plateau 1.2725 1.0522 NaN 1 0 Median 99308000 44759000 54550000 41561000 18815000 22745000 16226000 7138400 9087600 6635300 2964000 3671300 1516600 650660 865910 27612000 12602000 15010000 5758000 2588700 3169300 38658 2608 40603 204818;204819;204820;204821;204822;204823;204824;204825;204826;204827 208081;208082;208083;208084;208085;208086;208087;208088;208089 208082 9 YDDAIQLYDR RVKRLTGMRFEAMERYDDAIQLYDRILQED EAMERYDDAIQLYDRILQEDPTNTAARKRK R Y D D R I 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 10 0 1270.583 Q15006;H0YAS9 Q15006 103 112 EMC2 ER membrane protein complex subunit 2 yes no 2 0.016367 56.916 By MS/MS By MS/MS By matching 1 1 1 1.3122 1.2079 15.977 3 Plateau NaN NaN NaN 0 0 Median 1.5349 1.2784 NaN 1 0 Median 1.1218 1.1105 NaN 1 0 Median 0.95461 0.92943 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11086000 4784100 6302000 0 0 0 5562700 2345600 3217100 4734400 2064400 2670000 788990 374120 414870 0 0 0 0 0 0 38659 2909 40604 204828;204829;204830 208090;208091 208091 1 YDDMAAAMK SELVQKAKLAEQAERYDDMAAAMKAVTEQG AEQAERYDDMAAAMKAVTEQGHELSNEERN R Y D M K A 3 0 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 9 0 1014.4151 P31946;Q4VY20;Q4VY19;A0A0J9YWE8;P61981 P31946 21 29 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 2 0.00046424 124.08 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 3 1 1 1 1 1.241 1.0534 13.277 9 Median 1.142 1.0833 15.58 2 0 Median 1.2416 1.0379 21.822 3 0 Median 1.0513 0.98608 NaN 1 0 Median 1.2717 1.0534 NaN 1 0 Median 1.0844 1.1092 NaN 1 0 Median 1.3961 1.1678 NaN 1 0 Median 122490000 56839000 65656000 58191000 27307000 30885000 17179000 6991300 10188000 38796000 18956000 19840000 3029200 1204700 1824500 2622600 1339600 1282900 2676300 1040400 1635900 38660 2210;2566 40605 204831;204832;204833;204834;204835;204836;204837;204838;204839 208092;208093;208094;208095;208096;208097 208096 6 YDDMAACMK NELVQKAKLAEQAERYDDMAACMKSVTEQG AEQAERYDDMAACMKSVTEQGAELSNEERN R Y D M K S 2 0 0 2 1 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 9 0 1103.4086 P63104;E7EX29;E7ESK7;E9PD24;E7EVZ2;E5RIR4;E5RGE1 P63104 19 27 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.0012806 83.265 By MS/MS 1 1.0439 0.87709 NaN 1 Median NaN NaN NaN 0 0 Median 1.0439 0.87709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5433500 2615100 2818300 0 0 0 5433500 2615100 2818300 0 0 0 0 0 0 0 0 0 0 0 0 38661 2618 40606 204840 208098 208098 1 YDDMASAMK EQLLQRARLAEQAERYDDMASAMKAVTELN AEQAERYDDMASAMKAVTELNEPLSNEDRN R Y D M K A 2 0 0 2 0 0 0 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 9 0 1030.41 Q04917;F8WEB6;A2IDB1 Q04917 20 28 YWHAH 14-3-3 protein eta yes no 2 0.0032081 66.692 By MS/MS By MS/MS By MS/MS 1 1 1 1.1382 0.96604 10.598 3 Median 0.93693 0.87269 NaN 1 0 Median 1.1382 0.96604 NaN 1 0 Median 1.1428 1.0787 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15327000 7471700 7855000 8124000 4118500 4005500 1895000 937200 957790 5307700 2416000 2891700 0 0 0 0 0 0 0 0 0 38662 2714 40607 204841;204842;204843 208099;208100;208101;208102;208103;208104 208099 6 YDDPEVQK PNNTFYATKRLIGRRYDDPEVQKDIKNVPF KRLIGRRYDDPEVQKDIKNVPFKIVRASNG R Y D Q K D 0 0 0 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 8 0 992.44509 P38646;A0A3B3ITI4;D6RJI2 P38646 128 135 HSPA9 Stress-70 protein, mitochondrial yes no 2 0.0095557 60.59 By MS/MS By MS/MS By MS/MS By matching 2 1 1 1 1.0805 0.91939 16.174 5 Median 0.94156 0.93113 16.53 2 0 Median 1.0888 0.91939 NaN 1 0 Median 1.1249 1.1964 NaN 1 0 Median 0.95119 0.81833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9918700 4891200 5027500 1521400 843350 678060 6387300 3072400 3314900 1771900 847040 924890 237990 128340 109640 0 0 0 0 0 0 38663 2277 40608 204844;204845;204846;204847;204848 208105;208106;208107;208108 208108 4 YDDPEVQKDIK PNNTFYATKRLIGRRYDDPEVQKDIKNVPF IGRRYDDPEVQKDIKNVPFKIVRASNGDAW R Y D I K N 0 0 0 3 0 1 1 0 0 1 0 2 0 0 1 0 0 0 1 1 0 0 11 1 1348.6511 P38646;A0A3B3ITI4;D6RJI2 P38646 128 138 HSPA9 Stress-70 protein, mitochondrial yes no 2;3 0.010262 54.982 By MS/MS 2 1.0521 0.99511 16.571 2 Median 1.0521 0.99511 16.571 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8345400 4374500 3970900 8345400 4374500 3970900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38664 2277 40609 204849;204850 208109;208110;208111;208112 208111 4 YDDYPENGVVQMNSR TSRPALEEDVIYHVKYDDYPENGVVQMNSR YDDYPENGVVQMNSRDVRARARTIIKWQDL K Y D S R D 0 1 2 2 0 1 1 1 0 0 0 0 1 0 1 1 0 0 2 2 0 0 15 0 1785.7628 A0A087WVR3;A0A087WTW0;Q96T88 A0A087WVR3 201 215 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes no 2 2.4702E-10 166.14 By MS/MS By matching By MS/MS 1 1 2 0.73995 0.73889 16.304 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65031 0.68898 NaN 1 0 Median 0.72715 0.62659 NaN 1 0 Median 0.80824 0.84904 9.7598 2 2 Median NaN NaN NaN 0 0 Median 29609000 18507000 11102000 0 0 0 0 0 0 18361000 12477000 5883600 2540000 1454300 1085700 8708000 4575800 4132200 0 0 0 38665 20 40610 204851;204852;204853;204854 208113;208114;208115;208116 208114 4 YDDYSSSR PPTRGPPPSYGGSSRYDDYSSSRDGYGGSR SYGGSSRYDDYSSSRDGYGGSRDSYSSSRS R Y D S R D 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 3 0 0 2 0 0 0 8 0 991.3883 P38159;H3BUY5;Q96E39 P38159 310 317 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.0024268 119.29 By MS/MS By MS/MS By MS/MS 1 3 1 1.0476 1.1103 9.8159 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98547 0.96425 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0476 1.1103 5.6881 3 0 Median 1.4474 1.2413 NaN 1 0 Median 16807000 7871000 8935600 0 0 0 0 0 0 767170 402510 364670 0 0 0 15148000 7074300 8073500 891690 394220 497470 38666 2273;3632 40611 204855;204856;204857;204858;204859 208117;208118;208119;208120;208121;208122;208123;208124 208120 8 YDDYSSSRDGYGGSR PPTRGPPPSYGGSSRYDDYSSSRDGYGGSR YDDYSSSRDGYGGSRDSYSSSRSDLYSSGR R Y D S R D 0 2 0 3 0 0 0 3 0 0 0 0 0 0 0 4 0 0 3 0 0 0 15 1 1683.6761 P38159;H3BUY5;Q96E39 P38159 310 324 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 7.2322E-10 102.28 By matching By matching By MS/MS By MS/MS 1 1 4 3 1.1503 1.0835 22.467 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91322 0.94192 NaN 1 0 Median 0.70851 0.61825 NaN 1 0 Median 1.0835 1.1717 13.812 4 0 Median 1.2736 1.126 8.5705 3 0 Median 43579000 21338000 22240000 0 0 0 0 0 0 580520 342820 237700 400810 248350 152460 30038000 14916000 15123000 12559000 5831700 6727400 38667 2273;3632 40612 204860;204861;204862;204863;204864;204865;204866;204867;204868 208125;208126;208127;208128;208129;208130;208131;208132;208133;208134;208135 208134 11 YDEAASYIQSK SPLTICFPEYTGANKYDEAASYIQSKFEDL GANKYDEAASYIQSKFEDLNKRKDTKEIYT K Y D S K F 2 0 0 1 0 1 1 0 0 1 0 1 0 0 0 2 0 0 2 0 0 0 11 0 1273.5826 P04899 P04899 297 307 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 0.00015337 82.749 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 0.98379 0.92712 44.368 4 Median 1.026 0.9587 NaN 1 0 Median 1.0715 0.91702 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9433 0.93733 NaN 1 0 Median 0.46067 0.3863 NaN 1 0 Median 16409000 8536300 7872700 6502800 3627300 2875500 5190200 2665300 2524900 0 0 0 0 0 0 3972500 1894500 2077900 743550 349150 394400 38668 1855 40613 204869;204870;204871;204872;204873;204874 208136;208137;208138;208139;208140;208141 208140 6 YDEEFQR LKSQICDNAALYAQKYDEEFQRYLPRFVTA NAALYAQKYDEEFQRYLPRFVTAIWNLLVT K Y D Q R Y 0 1 0 1 0 1 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 985.41412 P55060 P55060 282 288 CSE1L Exportin-2 yes yes 2 3.5908E-06 159.14 By MS/MS By MS/MS By matching 2 2 1 1.1917 1.0518 31.004 5 Median 1.1082 1.0872 4.6819 2 0 Median 1.2125 1.0302 0.045201 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9836 2.1072 NaN 1 0 Median NaN NaN NaN 0 0 Median 30039000 13792000 16246000 8824200 4267500 4556700 20427000 9270000 11157000 0 0 0 0 0 0 787060 254960 532100 0 0 0 38669 2493 40614 204875;204876;204877;204878;204879 208142;208143;208144;208145;208146;208147;208148 208148 7 YDEELEGERPHSFR VDDLAQQKPRSILSKYDEELEGERPHSFRL KYDEELEGERPHSFRLEQGGTADGLREREL K Y D F R L 0 2 0 1 0 0 4 1 1 0 1 0 0 1 1 1 0 0 1 0 0 0 14 1 1762.7911 O43290 O43290 337 350 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3;4 1.3187E-08 142.85 By MS/MS By MS/MS By MS/MS By matching 3 4 2 2 0.96688 0.95377 12.294 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80184 0.92651 11.766 3 0 Median 0.97427 0.95042 5.1981 4 0 Linear 1.0126 1.1002 20.205 2 0 Median 1.1462 1.0362 4.4588 2 0 Median 70607000 35157000 35450000 0 0 0 0 0 0 36944000 19339000 17605000 25370000 12149000 13221000 6723600 3042600 3681000 1569400 626420 943020 38670 1563 40615 204880;204881;204882;204883;204884;204885;204886;204887;204888;204889;204890 208149;208150;208151;208152;208153;208154;208155;208156;208157;208158;208159 208150 11 YDEMVESMK EDLVYQAKLAEQAERYDEMVESMKKVAGMD AEQAERYDEMVESMKKVAGMDVELTVEERN R Y D M K K 0 0 0 1 0 0 2 0 0 0 0 1 2 0 0 1 0 0 1 1 0 0 9 0 1130.4624 P62258;B4DJF2;I3L3T1 P62258 20 28 YWHAE 14-3-3 protein epsilon yes no 2 0.00054779 115.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1 1.1139 0.97885 5.7052 8 Median 1.0526 0.98325 3.6925 2 0 Median 1.1272 0.94497 1.42 2 0 Median 1.0621 1.0079 4.949 2 0 Median 1.1684 0.98448 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3239 1.1138 NaN 1 0 Median 94702000 43799000 50903000 38328000 17629000 20699000 28096000 12871000 15225000 24003000 11432000 12572000 3059300 1358700 1700600 0 0 0 1215500 508530 706980 38671 2576 40616 204891;204892;204893;204894;204895;204896;204897;204898 208160;208161;208162;208163;208164;208165;208166;208167;208168;208169;208170 208166 11 YDEMVESMKK EDLVYQAKLAEQAERYDEMVESMKKVAGMD EQAERYDEMVESMKKVAGMDVELTVEERNL R Y D K K V 0 0 0 1 0 0 2 0 0 0 0 2 2 0 0 1 0 0 1 1 0 0 10 1 1258.5574 P62258;B4DJF2;I3L3T1 P62258 20 29 YWHAE 14-3-3 protein epsilon yes no 2;3 0.00031966 120.12 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 3 3 1.0673 1.0226 15.362 16 Median 1.0526 1.0336 22.977 6 0 Median 1.19 1.0716 8.6613 5 2 Median 0.96494 0.96155 1.3393 2 0 Median 1.1131 0.97737 5.5227 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125420000 58594000 66824000 58109000 27841000 30268000 38917000 16984000 21933000 18807000 9183200 9623500 9585800 4585400 5000300 0 0 0 0 0 0 38672 2576 40617 204899;204900;204901;204902;204903;204904;204905;204906;204907;204908;204909;204910;204911;204912;204913;204914;204915 208171;208172;208173;208174;208175;208176;208177;208178;208179;208180;208181;208182;208183;208184;208185;208186;208187;208188;208189;208190;208191;208192 208186 22 YDERPGPSPLPHR ADVNIRHSGRDDTSRYDERPGPSPLPHRDR SRYDERPGPSPLPHRDRDRDRERERRERSR R Y D H R D 0 2 0 1 0 0 1 1 1 0 1 0 0 0 4 1 0 0 1 0 0 0 13 1 1519.7532 P08621 P08621 219 231 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 3 6.4534E-07 107.37 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.57364 0.57262 10.514 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57945 0.60967 5.1317 2 1 Median 0.62237 0.57262 NaN 1 0 Median 0.52279 0.56668 NaN 1 0 Median 0.5377 0.47539 NaN 1 0 Median 28685000 19222000 9463400 0 0 0 0 0 0 8967400 5667200 3300100 2715000 1528800 1186200 12835000 9154700 3680300 4167900 2871200 1296700 38673 1905 40618 204916;204917;204918;204919;204920 208193;208194;208195;208196;208197;208198;208199;208200 208193 7 YDEYVNVK RLQHAAELIKTVASRYDEYVNVKDFSDKIN IKTVASRYDEYVNVKDFSDKINRALAAAKK R Y D V K D 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 8 0 1028.4815 Q8WUM4 Q8WUM4 291 298 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 0.028877 60.682 By MS/MS 1 1.3993 1.2247 NaN 1 Median NaN NaN NaN 0 0 Median 1.3993 1.2247 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4111800 1858000 2253800 0 0 0 4111800 1858000 2253800 0 0 0 0 0 0 0 0 0 0 0 0 38674 3493 40619 204921 208201 208201 1 YDEYVNVKDFSDK RLQHAAELIKTVASRYDEYVNVKDFSDKIN SRYDEYVNVKDFSDKINRALAAAKKDNDFI R Y D D K I 0 0 1 3 0 0 1 0 0 0 0 2 0 1 0 1 0 0 2 2 0 0 13 1 1620.7308 Q8WUM4 Q8WUM4 291 303 PDCD6IP Programmed cell death 6-interacting protein yes yes 3 0.033369 30.998 By MS/MS 1 0.90723 0.95606 NaN 1 Median 0.90723 0.95606 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3903200 2287200 1616000 3903200 2287200 1616000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38675 3493 40620 204922 208202 208202 1 YDGIILPGK HRISKEEAMRWFQQKYDGIILPGK______ RWFQQKYDGIILPGK_______________ K Y D G K - 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 0 0 0 1 0 0 0 9 0 974.54368 P62913;Q5VVC8 P62913 170 178 RPL11 60S ribosomal protein L11 yes no 2 0.0017857 77.674 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 2 3 6 5 1.0258 0.92863 16.759 29 Median 0.92231 0.82632 13.03 6 0 Median 1.068 0.90253 9.8374 7 0 Median 1.0516 0.99602 1.4785 2 0 Median 1.2581 1.0446 13.512 3 0 Plateau 0.90188 0.95768 25.249 6 0 Median 1.1435 0.92863 23.526 5 0 Median 624490000 312380000 312110000 322990000 163270000 159720000 96334000 47308000 49026000 68458000 34485000 33972000 21942000 9544000 12398000 90393000 46799000 43594000 24372000 10972000 13400000 38676 2609 40621 204923;204924;204925;204926;204927;204928;204929;204930;204931;204932;204933;204934;204935;204936;204937;204938;204939;204940;204941;204942;204943;204944;204945;204946;204947;204948;204949;204950;204951 208203;208204;208205;208206;208207;208208;208209;208210;208211;208212;208213;208214;208215;208216;208217;208218;208219;208220;208221;208222;208223;208224;208225 208205 23 YDGKWEVEEMK LSKAKKDDTDDEIAKYDGKWEVEEMKESKL EIAKYDGKWEVEEMKESKLPGDKGLVLMSR K Y D M K E 0 0 0 1 0 0 3 1 0 0 0 2 1 0 0 0 0 1 1 1 0 0 11 1 1412.6282 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7 P27824 100 110 CANX Calnexin yes no 3 0.011527 29.341 By matching By MS/MS 1 2 0.90817 0.93738 24.401 3 Median 0.90817 0.93738 NaN 1 0 Median 0.98471 0.93809 34.509 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8745200 4488300 4256900 3538600 1839200 1699300 5206600 2649100 2557500 0 0 0 0 0 0 0 0 0 0 0 0 38677 2158 40622 204952;204953;204954 208226;208227 208226 2 YDGKWEVEEMKESK LSKAKKDDTDDEIAKYDGKWEVEEMKESKL KYDGKWEVEEMKESKLPGDKGLVLMSRAKH K Y D S K L 0 0 0 1 0 0 4 1 0 0 0 3 1 0 0 1 0 1 1 1 0 0 14 2 1756.7978 P27824;H0Y9Q7;D6RAU8;D6RB85;D6RDP7 P27824 100 113 CANX Calnexin yes no 3 2.5024E-08 100.54 By MS/MS By MS/MS 2 2 1.3407 1.3377 27.351 4 Median 1.2491 1.2472 31.05 2 0 Median 1.4974 1.4493 32.474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40281000 19538000 20743000 28477000 14651000 13826000 11804000 4886900 6917300 0 0 0 0 0 0 0 0 0 0 0 0 38678 2158 40623 204955;204956;204957;204958 208228;208229;208230;208231;208232 208229 5 YDGLKYDVK GFRLLNLKNDSLRKRYDGLKYDVKKVEEVV DSLRKRYDGLKYDVKKVEEVVYDLSIRGFN R Y D V K K 0 0 0 2 0 0 0 1 0 0 1 2 0 0 0 0 0 0 2 1 0 0 9 1 1099.555 E9PGT1;Q15631 E9PGT1 190 198 TSN Translin yes no 2 0.023072 59.35 By MS/MS By matching 1 2 1.8515 1.8845 23.074 3 Median 1.8515 1.8845 NaN 1 0 Median 1.6877 1.6234 30.274 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8892100 2896300 5995800 4579300 1713900 2865400 4312700 1182400 3130400 0 0 0 0 0 0 0 0 0 0 0 0 38679 925 40624 204959;204960;204961 208233 208233 1 YDGNHIPGSPLQFYVDAINSR RYAPTEKGLHQMGIKYDGNHIPGSPLQFYV PGSPLQFYVDAINSRHVSAYGPGLSHGMVN K Y D S R H 1 1 2 2 0 1 0 2 1 2 1 0 0 1 2 2 0 0 2 1 0 0 21 0 2362.1342 Q14315 Q14315 1840 1860 FLNC Filamin-C yes yes 3 8.419E-08 62.684 By MS/MS 3 0.82058 0.80445 25.174 3 Median 0.82058 0.80445 25.174 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21180000 11165000 10015000 21180000 11165000 10015000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38680 2871 40625 204962;204963;204964 208234;208235;208236;208237;208238 208237 5 YDGQVAVFGSDLQEK KEVLTEDKCLQRQNRYDGQVAVFGSDLQEK YDGQVAVFGSDLQEKLGKQKYFLVGAGAIG R Y D E K L 1 0 0 2 0 2 1 2 0 0 1 1 0 1 0 1 0 0 1 2 0 0 15 0 1654.7839 P22314 P22314 451 465 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 6.5937E-11 131.17 By MS/MS By matching By MS/MS By matching By MS/MS By matching 5 4 2 1 1 2 1.2547 1.1301 19.134 15 Median 1.1224 1.0504 16.415 5 0 Median 1.3181 1.1334 5.7486 4 0 Median 1.0334 1.1121 4.2304 2 0 Median 1.3981 1.198 NaN 1 0 Median 1.566 1.6194 NaN 1 0 Median 1.12 0.92997 41.529 2 0 Median 336550000 157920000 178630000 256640000 121770000 134860000 40475000 17325000 23149000 33062000 16300000 16762000 3014200 1230400 1783800 3053900 1140800 1913000 309930 152160 157770 38681 2100 40626 204965;204966;204967;204968;204969;204970;204971;204972;204973;204974;204975;204976;204977;204978;204979 208239;208240;208241;208242;208243;208244;208245;208246;208247;208248;208249;208250;208251;208252 208241 14 YDGSGHMEVLR ILWIDARSDAIYSARYDGSGHMEVLRGHEF YSARYDGSGHMEVLRGHEFLSHPFAVTLYG R Y D L R G 0 1 0 1 0 0 1 2 1 0 1 0 1 0 0 1 0 0 1 1 0 0 11 0 1262.5714 Q07954 Q07954 1463 1473 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2;3 0.006947 43.282 By MS/MS By MS/MS By matching 2 1 1 0.93479 0.9891 25.836 4 Median 0.76079 0.76682 20.309 2 1 Median 1.4034 1.1756 NaN 1 0 Median 0.99949 1.1051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15899000 8249300 7649700 7507500 4266400 3241100 5842100 2872600 2969500 2549500 1110300 1439200 0 0 0 0 0 0 0 0 0 38682 2733 40627 204980;204981;204982;204983 208253;208254;208255 208253 2 YDHGTFFPMGDEGASSQIGR MFEDDPSVLYVSLHRYDHGTFFPMGDEGAS FFPMGDEGASSQIGRAAGTGFTVNVAWNGP R Y D G R A 1 1 0 2 0 1 1 4 1 1 0 0 1 2 1 2 1 0 1 0 0 0 20 0 2170.9378 A0A2R8YDE6;Q9UBN7 A0A2R8YDE6 619 638 HDAC6 Histone deacetylase 6 yes no 3 3.7099E-19 110.74 By matching By MS/MS By matching 1 1 1 1.137 1.0065 18.512 3 Median NaN NaN NaN 0 0 Median 1.137 1.0065 NaN 1 0 Median 0.66559 0.73204 NaN 1 0 Median 1.1795 1.0109 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7567600 4738300 2829300 0 0 0 191170 72695 118480 6733000 4249200 2483800 643410 416420 226990 0 0 0 0 0 0 38683 396 40628 204984;204985;204986 208256;208257 208256 2 YDHLDPTEMEK LVMKVIEAYRNKDERYDHLDPTEMEKVEKC KDERYDHLDPTEMEKVEKCISDAMSWLNSK R Y D E K V 0 0 0 2 0 0 2 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 11 0 1376.5918 O95757;E9PDE8 O95757 726 736 HSPA4L Heat shock 70 kDa protein 4L yes no 2 0.03568 29.473 By MS/MS 1 0.94735 0.84566 NaN 1 Median NaN NaN NaN 0 0 Median 0.94735 0.84566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1201000 724930 476090 0 0 0 1201000 724930 476090 0 0 0 0 0 0 0 0 0 0 0 0 38684 1790 40629 204987 208258 208258 1 YDLDFKSPDDPSR IGMDVAASEFFRSGKYDLDFKSPDDPSRYI GKYDLDFKSPDDPSRYISPDQLADLYKSFI K Y D S R Y 0 1 0 4 0 0 0 0 0 0 1 1 0 1 2 2 0 0 1 0 0 0 13 1 1553.6998 P06733;A0A2R8Y6G6 P06733 257 269 ENO1 Alpha-enolase yes no 2;3 9.1828E-05 94.616 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.91703 0.89636 9.2018 8 Median 0.90976 0.90517 8.0978 2 0 Median 0.86881 0.79333 3.1916 2 0 Median 0.91195 0.92427 5.8487 2 0 Median 1.0021 0.96066 8.2835 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88928000 43924000 45003000 51893000 25359000 26534000 9020600 4887700 4132900 17105000 8188400 8916200 10909000 5488700 5420600 0 0 0 0 0 0 38685 1873 40630 204988;204989;204990;204991;204992;204993;204994;204995 208259;208260;208261;208262;208263;208264;208265;208266;208267;208268;208269;208270;208271 208260 13 YDLEQGLGDLLTER YWSQFDENIRIILKRYDLEQGLGDLLTERK RYDLEQGLGDLLTERKALVVPEPEPDSDSN R Y D E R K 0 1 0 2 0 1 2 2 0 0 4 0 0 0 0 0 1 0 1 0 0 0 14 0 1620.7995 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 111 124 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 2 0.011444 33.225 By MS/MS 2 0.87523 0.9417 13.516 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87523 0.9417 13.516 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3753600 1999600 1754000 0 0 0 0 0 0 3753600 1999600 1754000 0 0 0 0 0 0 0 0 0 38686 3112 40631 204996;204997 208272 208272 1 YDLGGLVMVK VEKYGLLVGGAASHRYDLGGLVMVKDNHVV AASHRYDLGGLVMVKDNHVVAAGGVEKAVR R Y D V K D 0 0 0 1 0 0 0 2 0 0 2 1 1 0 0 0 0 0 1 2 0 0 10 0 1093.5842 Q15274 Q15274 162 171 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes yes 2 0.016801 38.16 By MS/MS 1 1.005 0.9166 NaN 1 Median 1.005 0.9166 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17205000 8281300 8923400 17205000 8281300 8923400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38687 2936 40632 204998 208273;208274 208274 2 YDLHQVK EDLPLCSILQQIQEKYDLHQVKKAMLRPAL ILQQIQEKYDLHQVKKAMLRPALFANLFGV K Y D V K K 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 901.46577 Q9BQG0;I3L1L3 Q9BQG0 119 125 MYBBP1A Myb-binding protein 1A yes no 2 0.051961 39.218 By MS/MS 1 1.1355 1.2167 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1355 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1552000 893960 658020 0 0 0 0 0 0 1552000 893960 658020 0 0 0 0 0 0 0 0 0 38688 3789 40633 204999 208275 208275 1 YDLLCLEGLVR ASDVVLYKIDVPANRYDLLCLEGLVRGLQV PANRYDLLCLEGLVRGLQVFKERIKAPVYK R Y D V R G 0 1 0 1 1 0 1 1 0 0 4 0 0 0 0 0 0 0 1 1 0 0 11 0 1349.7013 Q9NSD9 Q9NSD9 72 82 FARSB Phenylalanine--tRNA ligase beta subunit yes yes 2 0.0020633 55.567 By MS/MS 1 1.0365 0.89845 NaN 1 Median NaN NaN NaN 0 0 Median 1.0365 0.89845 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2558000 1078300 1479700 0 0 0 2558000 1078300 1479700 0 0 0 0 0 0 0 0 0 0 0 0 38689 4102 40634 205000 208276 208276 1 YDLSALVR EKEDLLCGATDGKKRYDLSALVRHAEPEQN ATDGKKRYDLSALVRHAEPEQNWEAVDGSQ R Y D V R H 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 8 0 935.50763 P11717 P11717 484 491 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.0072183 67.981 By MS/MS By MS/MS By matching 2 2 1 1.2709 1.1862 5.5916 5 Median 1.2401 1.2218 4.1798 2 0 Median 1.3289 1.1164 4.6379 2 0 Median NaN NaN NaN 0 0 Median 1.38 1.1965 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15046000 6476900 8568900 10346000 4419900 5925900 4572500 2008800 2563700 0 0 0 127550 48199 79347 0 0 0 0 0 0 38690 1969 40635 205001;205002;205003;205004;205005 208277;208278;208279;208280 208277 4 YDLTPAIQTTSTLYER GRNRRALGEANGVWKYDLTPAIQTTSTLYE DLTPAIQTTSTLYERGFENIMKRQNKEQVP K Y D E R G 1 1 0 1 0 1 1 0 0 1 2 0 0 0 1 1 4 0 2 0 0 0 16 0 1870.9313 Q6NUQ4;H7C0H8 Q6NUQ4 47 62 TMEM214 Transmembrane protein 214 yes no 2 1.1554E-06 91.937 By MS/MS By matching 1 1 1.0232 0.95242 0.52661 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92959 0.94888 NaN 1 0 Median 1.1263 0.95598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9595400 4914100 4681300 0 0 0 0 0 0 9209300 4747200 4462200 386070 166880 219190 0 0 0 0 0 0 38691 3145 40636 205006;205007 208281;208282 208281 2 YDLTVPFAR IYDLKDQGGELLSLRYDLTVPFARYLAMNK ELLSLRYDLTVPFARYLAMNKLTNIKRYHI R Y D A R Y 1 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 9 0 1080.5604 P12081;B3KWE1;P49590;A0A2R8Y5P7;A0A2R8Y3N3;A0A2R8Y6I1;D6RJE6;A0A2R8Y5E8;A0A2R8Y4X6 P12081 129 137 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 2 0.0022552 73.26 By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 1.0658 1.0177 96.193 8 Median 1.0747 1.0137 157.34 3 1 Median NaN NaN NaN 0 0 Median 1.0124 1.0249 0.43503 2 0 Median 1.0943 0.93106 3.9514 2 0 Median NaN NaN NaN 0 0 Median 2.563 2.2244 NaN 1 0 Median 85627000 29986000 55641000 57180000 16753000 40427000 0 0 0 20866000 9842200 11024000 7084500 3280700 3803800 0 0 0 496370 109610 386760 38692 1975 40637 205008;205009;205010;205011;205012;205013;205014;205015 208283;208284;208285;208286;208287;208288;208289 208287 7 YDNLEMEYLQK VSQLKSVDKSSNRERYDNLEMEYLQKRSDL NRERYDNLEMEYLQKRSDLLSPLLSLGQYL R Y D Q K R 0 0 1 1 0 1 2 0 0 0 2 1 1 0 0 0 0 0 2 0 0 0 11 0 1444.6544 Q8WUM0 Q8WUM0 832 842 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00014624 83.998 By matching By MS/MS 1 1 1.1654 1.1258 2.2045 2 Median NaN NaN NaN 0 0 Median 1.3076 1.1435 NaN 1 0 Median 1.0387 1.1084 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16478000 7205100 9272700 0 0 0 646010 300630 345380 15832000 6904500 8927300 0 0 0 0 0 0 0 0 0 38693 3492 40638 205016;205017 208290;208291 208291 2 YDNLITPVVDSLK NPTILFDYILSQIQKYDNLITPVVDSLKYL QKYDNLITPVVDSLKYLTSLNYDVLAYCII K Y D L K Y 0 0 1 2 0 0 0 0 0 1 2 1 0 0 1 1 1 0 1 2 0 0 13 0 1475.7872 Q8NI27;A0A0C4DG98 Q8NI27 590 602 THOC2 THO complex subunit 2 yes no 2 0.00074319 66.289 By matching By MS/MS By MS/MS 1 2 1 0.92147 0.86798 6.6435 4 Median NaN NaN NaN 0 0 Median 0.99454 0.86378 NaN 1 0 Median 0.84566 0.92519 8.3395 2 0 Median 0.93074 0.84759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9597000 4971600 4625300 0 0 0 439800 201520 238290 8128200 4263100 3865100 1029000 507060 521930 0 0 0 0 0 0 38694 3448 40639 205018;205019;205020;205021 208292;208293;208294;208295;208296;208297;208298;208299 208294 8 YDPGALVIPFSGALELK KKNKWLIKIKEWVDKYDPGALVIPFSGALE PGALVIPFSGALELKLQELSAEERQKYLEA K Y D L K L 2 0 0 1 0 0 1 2 0 1 3 1 0 1 2 1 0 0 1 1 0 0 17 0 1788.9662 J3KQ32;Q9NTK5 J3KQ32 274 290 OLA1 Obg-like ATPase 1 yes no 2 1.7306E-05 77.894 By MS/MS 1 0.85354 0.7321 NaN 1 Median NaN NaN NaN 0 0 Median 0.85354 0.7321 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4107300 2147200 1960100 0 0 0 4107300 2147200 1960100 0 0 0 0 0 0 0 0 0 0 0 0 38695 1315 40640 205022 208300;208301 208300 2 YDPLDPGDSNFDR YDEVFELVKVFADCKYDPLDPGDSNFDRDY CKYDPLDPGDSNFDRDYADFEIKIQDLDRR K Y D D R D 0 1 1 4 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 0 0 0 13 0 1509.6372 K7EK91;Q9UFH2 K7EK91 476 488 DNAH17 Dynein heavy chain 17, axonemal yes no 2 0.040448 25.938 By matching By matching By matching By matching By MS/MS By matching 2 1 2 2 1 1 0.95007 1.053 20.546 9 Median 0.8902 0.88323 6.1355 2 0 Median 1.3619 1.1819 NaN 1 0 Median 0.94877 1.0256 3.7338 2 0 Median 1.4547 1.2616 0.96339 2 0 Median 0.90003 0.94097 NaN 1 0 Median 1.939 1.6393 NaN 1 0 Median 33226000 16415000 16811000 11582000 5890500 5691600 448770 188200 260560 18843000 9262100 9581000 725990 287260 438730 1555500 766760 788710 70988 20197 50791 38696 1369 40641 205023;205024;205025;205026;205027;205028;205029;205030;205031 208302 208302 1 YDPPLEDGAMPSAR YNRDGDSYRSPWSNKYDPPLEDGAMPSARL KYDPPLEDGAMPSARLRKLEVEANNAFDQY K Y D A R L 2 1 0 2 0 0 1 1 0 0 1 0 1 0 3 1 0 0 1 0 0 0 14 0 1517.682 B1AK87;B1AK88;P47756;B1AK85 B1AK87 67 80 CAPZB F-actin-capping protein subunit beta yes no 2 0.00052445 68.069 By matching By MS/MS By matching 1 1 1 0.65077 0.6431 33.293 3 Median NaN NaN NaN 0 0 Median 0.82066 0.69374 NaN 1 0 Median 0.65077 0.6431 NaN 1 0 Median 0.42894 0.37664 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5614900 3439300 2175500 0 0 0 1573700 808220 765450 3564600 2293400 1271200 476610 337690 138920 0 0 0 0 0 0 38697 566 40642 205032;205033;205034 208303 208303 1 YDPSLKPLSVSYDQATSLR GERQSPVDIDTHTAKYDPSLKPLSVSYDQA LKPLSVSYDQATSLRILNNGHAFNVEFDDS K Y D L R I 1 1 0 2 0 1 0 0 0 0 3 1 0 0 2 4 1 0 2 1 0 0 19 1 2139.0848 P00918;E5RID5;E5RK37 P00918 40 58 CA2 Carbonic anhydrase 2 yes no 2;3 1.0289E-18 124.18 By MS/MS By MS/MS 2 1 0.84783 0.8488 19.268 3 Median 0.78212 0.78854 10.414 2 0 Median 1.1564 1.0734 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58266000 30854000 27412000 53131000 28863000 24269000 5135000 1991900 3143200 0 0 0 0 0 0 0 0 0 0 0 0 38698 1827 40643 205035;205036;205037 208304;208305;208306;208307 208305 4 YDPTIEDFYR SALTVQFVTGSFIEKYDPTIEDFYRKEIEV SFIEKYDPTIEDFYRKEIEVDSSPSVLEIL K Y D Y R K 0 1 0 2 0 0 1 0 0 1 0 0 0 1 1 0 1 0 2 0 0 0 10 0 1317.5877 Q9Y3L5;F6U784;P10114;P61225 P61225 32 41 RAP2C;RAP2A;RAP2B Ras-related protein Rap-2c;Ras-related protein Rap-2a;Ras-related protein Rap-2b no no 2 0.00094065 69.954 By MS/MS By matching 2 1 0.95182 0.95425 22.058 3 Median 0.82689 0.80356 24.306 2 0 Median 1.222 1.021 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5113100 2548100 2564900 4444100 2261400 2182700 668970 286720 382250 0 0 0 0 0 0 0 0 0 0 0 0 38699 2552;4431 40644 205038;205039;205040 208308;208309 208309 2 YDPTIEDSYR SALTVQFVQGIFVEKYDPTIEDSYRKQVEV IFVEKYDPTIEDSYRKQVEVDAQQCMLEIL K Y D Y R K 0 1 0 2 0 0 1 0 0 1 0 0 0 0 1 1 1 0 2 0 0 0 10 0 1257.5513 P61224;P62834;A6NIZ1;F5H7Y6;E7ESV4;F5GX62;F5H004;F5H6R7;F5GYB5;A0A075B6Q0;F5H4H0;F5H500;F5H0B7;F5H491;F5GWU8;F5H077;F5GYH7 P61224 32 41 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 6.5039E-06 154.49 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1 1.0352 0.8779 17.19 7 Median 0.78277 0.75883 4.6059 2 0 Median 1.0471 0.87661 0.20909 2 0 Median 0.92312 0.88676 NaN 1 0 Median 1.0703 0.885 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6242 1.2653 NaN 1 0 Median 74487000 37678000 36810000 40246000 20946000 19300000 15766000 7368800 8396800 16390000 8526500 7863800 1411800 571000 840770 0 0 0 673890 265860 408020 38700 2551 40645 205041;205042;205043;205044;205045;205046;205047 208310;208311;208312;208313;208314;208315;208316;208317;208318;208319;208320;208321 208311 12 YDPTIEDSYRK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV FVEKYDPTIEDSYRKQVEVDAQQCMLEILD K Y D R K Q 0 1 0 2 0 0 1 0 0 1 0 1 0 0 1 1 1 0 2 0 0 0 11 1 1385.6463 P61224;P62834;F5H7Y6;E7ESV4;F5GX62;F5H004;F5H6R7;F5GYB5;A0A075B6Q0;F5H4H0;F5H500;F5H0B7;F5H491;F5GWU8;F5H077;F5GYH7 P61224 32 42 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 2;3 4.0803E-05 79.659 By MS/MS By MS/MS By MS/MS 4 4 2 0.90857 0.91016 9.2394 10 Median 0.83741 0.85228 4.8456 4 0 Median 1.0761 0.97118 10.263 4 0 Median 0.90857 0.94565 5.3927 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 63740000 33070000 30670000 34695000 18852000 15843000 13738000 6618100 7119500 15307000 7599300 7708100 0 0 0 0 0 0 0 0 0 38701 2551 40646 205048;205049;205050;205051;205052;205053;205054;205055;205056;205057 208322;208323;208324;208325;208326;208327;208328;208329;208330;208331;208332;208333;208334;208335;208336;208337 208322 16 YDQNYDIR KQTKLLTQYILNLGKYDQNYDIRDRTRFIR YILNLGKYDQNYDIRDRTRFIRQLIVPNVK K Y D I R D 0 1 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 8 0 1085.4778 O00203;A0A590UJU0;A0A590UJ60;A0A590UK04;A0A2R8Y2A8;A0A590UKC4;Q13367;A0A590UJU7;A0A590UJE5 O00203 564 571 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 2 0.0024268 119.29 By MS/MS 1 1.2494 1.0487 NaN 1 Median NaN NaN NaN 0 0 Median 1.2494 1.0487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7291500 3175400 4116100 0 0 0 7291500 3175400 4116100 0 0 0 0 0 0 0 0 0 0 0 0 38702 1447 40647 205058 208338;208339 208339 2 YDREMKDYGPAK EKSKFDEMAKADKVRYDREMKDYGPAKGGK KVRYDREMKDYGPAKGGKKKKDPNAPKRPP R Y D A K G 1 1 0 2 0 0 1 1 0 0 0 2 1 0 1 0 0 0 2 0 0 0 12 2 1471.6766 E7ES08;E7EQU1;O15347;E9PES6 E7ES08 71 82 HMGB3 High mobility group protein B3 yes no 3 0.069433 13.404 By MS/MS 1 1.2606 1.0398 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2606 1.0398 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 537930 241100 296820 0 0 0 0 0 0 0 0 0 537930 241100 296820 0 0 0 0 0 0 38703 880 40648 205059 208340 208340 1 YDSDRTELGFTNYIR YPTFHYYHYGKFAEKYDSDRTELGFTNYIR YDSDRTELGFTNYIRALREGDHERLGKKKE K Y D I R A 0 2 1 2 0 0 1 1 0 1 1 0 0 1 0 1 2 0 2 0 0 0 15 1 1848.8642 Q14554 Q14554 488 502 PDIA5 Protein disulfide-isomerase A5 yes yes 3 0.00046254 39.509 By MS/MS By matching 1 1 1.2475 1.2436 11.282 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0631 1.1482 NaN 1 0 Median 1.4639 1.3469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6931300 3230800 3700500 0 0 0 0 0 0 6487700 3064900 3422800 443620 165880 277740 0 0 0 0 0 0 38704 2880 40649 205060;205061 208341 208341 1 YDSWHKEVLSK VVIDYGKVQSKVNLKYDSWHKEVLSKFGQM VNLKYDSWHKEVLSKFGQMLGSNMTEFHSQ K Y D S K F 0 0 0 1 0 0 1 0 1 0 1 2 0 0 0 2 0 1 1 1 0 0 11 1 1390.6881 Q14204 Q14204 1120 1130 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0043931 37.327 By MS/MS By MS/MS 1 1 1.3918 1.548 32.811 2 Median 1.7938 1.9523 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.08 1.2275 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8679800 3280600 5399200 5590200 1923700 3666500 0 0 0 3089600 1356900 1732700 0 0 0 0 0 0 0 0 0 38705 2865 40650 205062;205063 208342;208343;208344 208344 3 YDTLAQMLTLGNIR IMYYAREPGKINHMRYDTLAQMLTLGNIRA RYDTLAQMLTLGNIRAGNKMIVMETCAGLV R Y D I R A 1 1 1 1 0 1 0 1 0 1 3 0 1 0 0 0 2 0 1 0 0 0 14 0 1607.8341 Q9UJA5 Q9UJA5 185 198 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 5.4254E-05 84.658 By MS/MS By MS/MS By matching 2 3 1 1.0586 0.93606 82.93 5 Median 1.4061 1.4156 NaN 1 0 Median 1.1191 0.97057 98.523 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0586 0.93606 NaN 1 0 Median 6450500 2847600 3602900 2269300 766780 1502500 4146500 2059900 2086500 0 0 0 0 0 0 0 0 0 34733 20926 13808 38706 4294 40651 205064;205065;205066;205067;205068;205069 208345;208346;208347;208348 208347 4 YDTVLDILR CNSMVLFDHVGCLKKYDTVLDILRDFFELR VGCLKKYDTVLDILRDFFELRLKYYGLRKE K Y D L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 9 0 1106.5972 P11388 P11388 1012 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0049104 59.245 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 1 1.2107 1.2955 17.754 7 Median NaN NaN NaN 0 0 Median 1.4689 1.3037 NaN 1 0 Median 1.1805 1.2858 6.3488 2 0 Median 1.5509 1.3657 NaN 1 0 Median 1.133 1.1961 11.285 2 0 Median 0.93429 0.8262 NaN 1 0 Median 9753500 4118600 5634900 0 0 0 314350 139680 174670 2872000 1253000 1619000 711580 259260 452320 5720500 2407900 3312700 135040 58792 76250 38707 1963 40652 205070;205071;205072;205073;205074;205075;205076 208349;208350;208351 208351 3 YDVQHLQTALR PNKRQNARLRVDQLKYDVQHLQTALRNFQH DQLKYDVQHLQTALRNFQHRRHAREQQERQ K Y D L R N 1 1 0 1 0 2 0 0 1 0 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1342.6993 A0A1W2PRD0;A0A1W2PQ38;E7EQ34;A0A1W2PS81;A0A1W2PQP2;A0A1W2PQM3;A0A1W2PRC2;I3L4Z6;A0A1W2PPG1;A0A1W2PPP5;A0A1W2PPG5;I3L0K1;A0A1W2PRP7;A0A1W2PRV0;A0A1W2PRL0;A0A1X7SBU8;A0A1W2PS12;A0A1W2PRE6;A0A1W2PR02;A0A1W2PQ77;A0A1W2PPW8;A0A1W2PPJ0;A0A1W2PR23;A0A1W2PNV3;A0A1W2PQE0;I3L1K7;A0A1W2PQ06;I3NI02;O14653 A0A1W2PRD0 57 67 GOSR2 Golgi SNAP receptor complex member 2 yes no 3 5.6219E-05 100.88 By MS/MS By MS/MS By MS/MS By matching By matching 2 1 1 1 1 1.4445 1.2638 16.13 6 Median 1.1474 1.1109 19.513 2 0 Median 1.4765 1.2525 NaN 1 0 Median 1.6495 1.576 NaN 1 1 Median 1.4133 1.1682 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6653 1.3495 NaN 1 0 Median 26001000 10130000 15870000 17707000 6888200 10819000 2300000 880310 1419700 3913200 1563000 2350200 1278000 480600 797440 0 0 0 802510 318280 484240 38708 333 40653 205077;205078;205079;205080;205081;205082 208352;208353;208354;208355;208356 208353 5 YDVYLYDR QPDPESVVLGTDGGRYDVYLYDRIRKAAYW LGTDGGRYDVYLYDRIRKAAYWEEEPAEVR R Y D D R I 0 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 8 0 1105.508 Q9Y6Y8;A0A0C4DH82;H7C4C4;H7C0V8 Q9Y6Y8 319 326 SEC23IP SEC23-interacting protein yes no 2 0.012958 53.968 By MS/MS By MS/MS 1 2 1.3563 1.2386 16.851 3 Median 1.3732 1.3278 NaN 1 0 Median 1.2445 1.0926 17.734 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10136000 4856700 5279200 4570100 2259500 2310600 5565900 2597300 2968600 0 0 0 0 0 0 0 0 0 0 0 0 38709 4502 40654 205083;205084;205085 208357;208358 208357 2 YDWDLLAAR ITWNRKKLGEFFQTKYDWDLLAARSIWAFG EFFQTKYDWDLLAARSIWAFGPDATGPNIL K Y D A R S 2 1 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 0 1121.5506 Q15029;K7EP67;K7EJ74 Q15029 722 730 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes no 2 0.0032979 66.073 By matching By matching By MS/MS By matching By MS/MS By matching 1 2 3 1 3 1 1.1215 1.0753 18.198 11 Median 1.15 1.112 NaN 1 0 Median 1.217 1.0731 7.6577 2 0 Median 1.0246 1.125 11.926 3 0 Median 0.72688 0.63736 NaN 1 0 Median 1.1212 1.1628 6.5983 3 0 Plateau 1.1861 1.0169 NaN 1 0 Median 29118000 13312000 15805000 3908600 1774400 2134200 3633700 1614800 2018900 10677000 4973100 5703900 64935 31811 33124 9904300 4470800 5433500 928910 447580 481330 38710 2917 40655 205086;205087;205088;205089;205090;205091;205092;205093;205094;205095;205096 208359;208360;208361;208362;208363;208364;208365;208366 208360 8 YDYEEVEAEGANK LKDHWQKYGRNFFTRYDYEEVEAEGANKMM TRYDYEEVEAEGANKMMKDLEALMFDRSFV R Y D N K M 2 0 1 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 2 1 0 0 13 0 1515.6365 P36871;A0A3B3ITK7 P36871 428 440 PGM1 Phosphoglucomutase-1 yes no 2 5.4073E-07 166.97 By MS/MS By MS/MS By MS/MS 1 1 1 1.034 0.96769 6.9403 3 Median 1.002 0.92882 NaN 1 0 Median 1.1551 0.96769 NaN 1 0 Median 1.034 1.0634 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 65070000 31907000 33163000 51178000 25600000 25577000 11075000 4939700 6135200 2817400 1367200 1450200 0 0 0 0 0 0 0 0 0 38711 2262 40656 205097;205098;205099 208367;208368;208369;208370;208371 208368 5 YDYNSGEELESYK KEFLVAGGEDFKLYKYDYNSGEELESYKGH YKYDYNSGEELESYKGHFGPIHCVRFSPDG K Y D Y K G 0 0 1 1 0 0 3 1 0 0 1 1 0 0 0 2 0 0 3 0 0 0 13 0 1595.6627 Q9Y3F4;H0YH33 Q9Y3F4 250 262 STRAP Serine-threonine kinase receptor-associated protein yes no 2 5.1709E-07 141.93 By MS/MS By matching By MS/MS By MS/MS 1 1 2 1 1.0544 0.97342 17.138 5 Median 1.0544 0.97342 NaN 1 0 Median 0.97335 0.82582 NaN 1 0 Median 1.0417 1.0372 28.74 2 0 Median 1.1487 0.97736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 73314000 33521000 39793000 19821000 9492000 10329000 654180 326240 327950 44740000 20032000 24708000 8098600 3671100 4427600 0 0 0 0 0 0 38712 4429 40657 205100;205101;205102;205103;205104 208372;208373;208374;208375;208376;208377;208378 208373 7 YDYQRQPDSGISSIR DLKHTGAVLKGPFSRYDYQRQPDSGISSIR YDYQRQPDSGISSIRSFKTILPAAAQDVYY R Y D I R S 0 2 0 2 0 2 0 1 0 2 0 0 0 0 1 3 0 0 2 0 0 0 15 1 1783.8489 P04843;B7Z4L4 P04843 264 278 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes no 3 0.0017323 35.091 By MS/MS 1 0.90792 0.89451 NaN 1 Median 0.90792 0.89451 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9357100 4766700 4590300 9357100 4766700 4590300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38713 1853 40658 205105 208379 208379 1 YDYVLTGYTR LQELYEGLRLNNMNKYDYVLTGYTRDKSFL NNMNKYDYVLTGYTRDKSFLAMVVDIVQEL K Y D T R D 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 3 1 0 0 10 0 1249.5979 O00764;F2Z2Y4 O00764 77 86 PDXK Pyridoxal kinase yes no 2 0.00067062 111.46 By MS/MS By MS/MS 1 1 1.1866 1.0501 0.79855 2 Median 1.1158 1.0442 NaN 1 0 Median 1.2618 1.056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22442000 10164000 12278000 19261000 8890100 10370000 3181200 1273500 1907700 0 0 0 0 0 0 0 0 0 0 0 0 38714 1478 40659 205106;205107 208380;208381;208382 208381 3 YEAAGTLVTLSSAPTAIK RCIYNLLQSSSPAVKYEAAGTLVTLSSAPT AGTLVTLSSAPTAIKAAAQCYIDLIIKESD K Y E I K A 4 0 0 0 0 0 1 1 0 1 2 1 0 0 1 2 3 0 1 1 0 0 18 0 1791.9618 P53618;E9PP73 P53618 262 279 COPB1 Coatomer subunit beta yes no 2 5.328E-06 73.848 By MS/MS By matching By matching 2 1 1 0.89838 0.83474 34.085 4 Median 0.65234 0.64188 35.917 2 0 Median 0.94186 0.84207 NaN 1 0 Median 1.0501 1.1318 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20117000 10854000 9262600 17133000 9396100 7736700 555340 280080 275260 2428600 1178000 1250700 0 0 0 0 0 0 0 0 0 38715 2472 40660 205108;205109;205110;205111 208383;208384;208385 208384 3 YEAANWK TGMTADSRSQVQRARYEAANWKYKYGYEIP RSQVQRARYEAANWKYKYGYEIPVDMLCKR R Y E W K Y 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 7 0 880.40792 G3V5Z7;P60900;G3V295;G3V3I1 G3V5Z7 96 102 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 yes no 2 0.018479 62.714 By MS/MS 1 1.0625 0.99209 NaN 1 Median 1.0625 0.99209 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4050900 1825200 2225700 4050900 1825200 2225700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38716 1122 40661 205112 208386 208386 1 YEALKEPMVAR DAENIKKKQEALVARYEALKEPMVARKQKL LVARYEALKEPMVARKQKLADSLRLQQLFR R Y E A R K 2 1 0 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 11 1 1305.6751 A0A0D9SF54;Q13813 Q13813 766 776 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 2;3 3.5669E-05 122.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 5 1 2 0.96849 0.95368 27.829 17 Median 1.2459 1.252 19.75 3 0 Median 1.1409 1.0423 41.052 3 0 Median 0.85037 1.0183 27.948 3 0 Plateau 0.86888 0.80933 17.148 5 0 Median 0.72342 0.81962 NaN 1 0 Median 1.1285 0.99277 20.252 2 0 Median 274410000 140210000 134200000 20935000 9125600 11809000 95746000 46392000 49354000 104260000 57505000 46760000 33504000 16879000 16625000 6980500 4179300 2801200 12982000 6128300 6853700 38717 264;2838 40662 205113;205114;205115;205116;205117;205118;205119;205120;205121;205122;205123;205124;205125;205126;205127;205128;205129;205130 208387;208388;208389;208390;208391;208392;208393;208394;208395;208396;208397;208398;208399;208400;208401 208395 14 YEAVGSVHQAWEAIR SLQILDQLLLPKQSRYEAVGSVHQAWEAIR YEAVGSVHQAWEAIRAMKVRGAPAIALVGC R Y E I R A 3 1 0 0 0 1 2 1 1 1 0 0 0 0 0 1 0 1 1 2 0 0 15 0 1714.8427 Q9BV20 Q9BV20 27 41 MRI1 Methylthioribose-1-phosphate isomerase yes yes 2;3 9.556E-06 84.566 By MS/MS 2 0.98844 0.98679 NaN 1 Median 0.98844 0.98679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16254000 8513400 7740300 16254000 8513400 7740300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38718 3844 40663 205131;205132 208402;208403;208404 208403 3 YEDAVQFIR APVLVALALIECGMKYEDAVQFIRQKRRGA IECGMKYEDAVQFIRQKRRGAFNSKQLLYL K Y E I R Q 1 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 9 0 1139.5611 Q12974 Q12974 123 131 PTP4A2 Protein tyrosine phosphatase type IVA 2 no no 2 0.0036618 63.565 By MS/MS By MS/MS By matching 1 1 1 1.1154 0.92762 8.9438 3 Median NaN NaN NaN 0 0 Median 1.1154 0.92762 NaN 1 0 Median 0.91328 0.86729 NaN 1 0 Median 1.2658 1.0354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4342900 2035700 2307200 0 0 0 1116100 519710 596410 2914500 1366300 1548200 312290 149690 162610 0 0 0 0 0 0 38719 2776 40664 205133;205134;205135 208405;208406;208407 208406 3 YEDAYQYQNIFGPLVK EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV EDAYQYQNIFGPLVKLEADYDKKLKESQTQ R Y E V K L 1 0 1 1 0 2 1 1 0 1 1 1 0 1 1 0 0 0 3 1 0 0 16 0 1946.9414 Q92900 Q92900 296 311 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00013855 60.434 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.872 0.8643 14.353 4 Median 0.92076 0.89635 NaN 1 0 Median 0.82582 0.70708 NaN 1 0 Median 0.92203 0.99472 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81136 0.8334 NaN 1 0 Median NaN NaN NaN 0 0 Median 9919500 4837900 5081600 5968900 2865100 3103800 1071800 571870 499910 2202400 1071800 1130600 0 0 0 676420 329100 347320 0 0 0 38720 3564 40665 205136;205137;205138;205139 208408;208409;208410 208409 3 YEDEINKR ELKNMQDMVEDYRNKYEDEINKRTNAENEF VEDYRNKYEDEINKRTNAENEFVTIKKDVD K Y E K R T 0 1 1 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 8 1 1065.5091 P05787;CON__P05787;F8VUG2;F8W1U3;F8VP67;CON__H-INV:HIT000016045;P04264;CON__P04264;CON__P02538;P02538;CON__P04259;CON__P13647;P13647;F8W0C6;H0YIN9;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908;CON__ENSEMBL:ENSBTAP00000038253;CON__Q7Z794;Q7Z794 P04264 270 277 KRT8;KRT1;KRT6A;KRT5;KRT6C;KRT2;KRT77 Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 2 0.011258 65.038 By MS/MS By matching By MS/MS By MS/MS By MS/MS 4 1 2 1 3 0.59908 0.55016 112.91 9 Median NaN NaN NaN 0 0 Median 0.76606 0.6998 128.42 3 1 Median 0.94888 1.0528 NaN 1 0 Median 0.40163 0.37689 NaN 1 0 Median 0.067278 0.07627 NaN 1 1 Median 0.59908 0.55016 129.24 3 1 Median 10677000 7357300 3319700 0 0 0 5361200 3382600 1978700 1168400 607980 560410 924870 775120 149750 1391800 1242800 149050 1830600 1348800 481800 + 38721 1848;750;764;765;757;741;748;766;735;789 40666 205140;205141;205142;205143;205144;205145;205146;205147;205148;205149;205150 208411;208412;208413;208414;208415;208416;208417;208418 208414 8 YEDFKEEGSENAVK HTDFEKGFIMAEVMKYEDFKEEGSENAVKA KYEDFKEEGSENAVKAAGKYRQQGRNYIVE K Y E V K A 1 0 1 1 0 0 4 1 0 0 0 2 0 1 0 1 0 0 1 1 0 0 14 1 1643.7315 J3KQ32;Q9NTK5 J3KQ32 370 383 OLA1 Obg-like ATPase 1 yes no 2;3 1.0797E-06 113.69 By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 3 1.0354 0.96817 11.384 12 Median 1.0796 1.0049 8.6811 4 0 Median 1.0354 0.9572 2.1197 4 0 Median 0.97592 1.0265 NaN 1 0 Median 0.88407 0.83971 17.646 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54814000 26795000 28018000 29050000 13498000 15552000 11222000 5213200 6009200 3441900 1955100 1486700 11100000 6129400 4970300 0 0 0 0 0 0 38722 1315 40667 205151;205152;205153;205154;205155;205156;205157;205158;205159;205160;205161;205162 208419;208420;208421;208422;208423;208424;208425;208426;208427;208428;208429;208430;208431;208432;208433;208434 208419 16 YEDFSNLGTTHLLR SPVSRIGLFIKAGSRYEDFSNLGTTHLLRL RYEDFSNLGTTHLLRLTSSLTTKGASSFKI R Y E L R L 0 1 1 1 0 0 1 1 1 0 3 0 0 1 0 1 2 0 1 0 0 0 14 0 1664.8158 P22695;H3BRG4;H3BSJ9;H3BP04;H3BUE4;H3BUI9;A0A087WVZ4 P22695 71 84 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes no 2;3 2.0688E-11 128.01 By MS/MS By matching By MS/MS By matching By matching By matching 3 1 2 1 2 1 1.1757 1.082 11.147 10 Median 1.1519 1.0902 7.4255 3 1 Median 1.478 1.2876 NaN 1 0 Median 0.93976 0.97026 12.224 2 0 Median 1.4449 1.2574 NaN 1 0 Median 1.1018 1.1245 10.305 2 0 Median 1.216 1.0738 NaN 1 0 Median 105750000 44613000 61139000 57780000 23706000 34074000 24840000 10143000 14697000 18688000 9109300 9578600 2234600 869710 1364900 2003700 695990 1307700 205350 89718 115640 38723 2105 40668 205163;205164;205165;205166;205167;205168;205169;205170;205171;205172 208435;208436;208437;208438;208439;208440;208441;208442 208437 8 YEDFVVDGFNVLYNK REGLAKICRLAIHSRYEDFVVDGFNVLYNK YEDFVVDGFNVLYNKKPVIYLSAAARPGLG R Y E N K K 0 0 2 2 0 0 1 1 0 0 1 1 0 2 0 0 0 0 2 3 0 0 15 0 1820.8621 Q6P996;H3BND4;Q86XE2;J3KNK7;H3BNL6 Q6P996 158 172 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 yes no 2 0.0066681 33.866 By MS/MS 1 0.97372 0.97857 NaN 1 Median 0.97372 0.97857 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1343300 644380 698870 1343300 644380 698870 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38724 3164 40669 205173 208443 208443 1 YEDGIALLR KAVVKKAELLSREQKYEDGIALLRNALANQ LSREQKYEDGIALLRNALANQSDCVLHRIL K Y E L R N 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1048.5553 Q9UJX3;H0YIW2 Q9UJX3 492 500 ANAPC7 Anaphase-promoting complex subunit 7 yes no 2 0.0020175 75.109 By matching By MS/MS By MS/MS 1 1 1 1.147 0.95739 14 3 Median NaN NaN NaN 0 0 Median 1.3018 1.1567 NaN 1 0 Median 0.87582 0.88008 NaN 1 0 Median 1.147 0.95739 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12335000 5931700 6402800 0 0 0 420920 238470 182450 10169000 4935200 5233700 1744700 758050 986670 0 0 0 0 0 0 38725 4301 40670 205174;205175;205176 208444;208445;208446 208444 3 YEDHTIFHDISLR KAKNRAVHHLHYIERYEDHTIFHDISLRFK ERYEDHTIFHDISLRFKRTHIKMKKQPKGY R Y E L R F 0 1 0 2 0 0 1 0 2 2 1 0 0 1 0 1 1 0 1 0 0 0 13 0 1644.7896 P82675 P82675 285 297 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 3 0.0013956 38.799 By MS/MS 1 0.90552 0.89716 NaN 1 Median 0.90552 0.89716 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5734900 2925500 2809400 5734900 2925500 2809400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38726 2653 40671 205177 208447 208447 1 YEDICPSTHNMDVPNIK AKVHLVGIDIFTGKKYEDICPSTHNMDVPN DICPSTHNMDVPNIKRNDFQLIGIQDGYLS K Y E I K R 0 0 2 2 1 0 1 0 1 2 0 1 1 0 2 1 1 0 1 1 0 0 17 0 2031.903 I3L397;I3L504;P63241;Q6IS14;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 69 85 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 2;3 6.4896E-11 101.39 By MS/MS By MS/MS 2 1 0.89123 0.8082 13.114 3 Plateau NaN NaN NaN 0 0 Median 0.88562 0.76433 18.481 2 0 Median 0.78128 0.74989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17600000 10387000 7213200 0 0 0 9410100 5232000 4178100 8189700 5154700 3035000 0 0 0 0 0 0 0 0 0 38727 1287 40672 205178;205179;205180 208448;208449;208450;208451;208452 208450 5 YEDQELTGK RREKEMLERLEKQKRYEDQELTGKNLPAFR LEKQKRYEDQELTGKNLPAFRLVDTPEGLP R Y E G K N 0 0 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 1081.4928 Q9UIG0 Q9UIG0 580 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00043177 128.69 By matching By MS/MS By MS/MS 1 2 2 0.89088 0.89057 11.907 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89088 0.89057 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87993 0.91466 13.302 2 0 Median 0.98324 0.8318 17.221 2 1 Median 17828000 8340100 9488300 0 0 0 0 0 0 488800 222690 266110 0 0 0 15302000 7213300 8088800 2037500 904090 1133400 38728 4290 40673 205181;205182;205183;205184;205185 208453;208454;208455;208456 208454 4 YEEEEEQSR DELEEEARKADRESRYEEEEEQSRSMSRKR ADRESRYEEEEEQSRSMSRKRKASVHSSGR R Y E S R S 0 1 0 0 0 1 5 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 9 0 1197.4786 Q9Y5B9 Q9Y5B9 1006 1014 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0029859 68.224 By matching By matching By matching By MS/MS 1 1 1 1 1.0861 1.0019 35.435 4 Median 0.51945 0.51637 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2458 1.0976 NaN 1 0 Median 1.0285 1.078 NaN 1 0 Median 1.1469 0.93111 NaN 1 0 Median 1155100 506080 649050 91209 59547 31662 0 0 0 0 0 0 209530 88032 121490 329010 120540 208480 525390 237970 287420 38729 4456 40674 205186;205187;205188;205189 208457;208458 208458 2 YEEEINKR ELKTMQDSVEDFKTKYEEEINKRTAAENDF VEDFKTKYEEEINKRTAAENDFVVLKKDVD K Y E K R T 0 1 1 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 8 1 1079.5247 CON__P19013;P19013 CON__P19013 301 308 KRT4 Keratin, type II cytoskeletal 4 no no 2 0.034319 56.011 By MS/MS 1 0.11804 0.13395 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.11804 0.13395 NaN 1 1 Median NaN NaN NaN 0 0 Median 2315700 2165200 150450 0 0 0 0 0 0 0 0 0 0 0 0 2315700 2165200 150450 0 0 0 + 38730 761 40675 205190 208459 208459 1 YEEELEINDFPQTAR EEERQDGGQNESFKRYEEELEINDFPQTAR YEEELEINDFPQTARWKVTSKEALQRISEY R Y E A R W 1 1 1 1 0 1 4 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 15 0 1852.8479 Q7L014;A0A0C4DG89 Q7L014 932 946 DDX46 Probable ATP-dependent RNA helicase DDX46 yes no 2 8.1025E-09 156.71 By MS/MS 1 0.81121 0.89201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81121 0.89201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10623000 6196000 4427300 0 0 0 0 0 0 10623000 6196000 4427300 0 0 0 0 0 0 0 0 0 38731 3216 40676 205191 208460;208461 208460 2 YEEFMLRR HDIRLILSDDVLMEKYEEFMLRRWLVADPD DDVLMEKYEEFMLRRWLVADPDCRWCPAPD K Y E R R W 0 2 0 0 0 0 2 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 8 1 1142.5543 Q9NV58;Q6ZMZ0 Q9NV58 201 208 RNF19A;RNF19B E3 ubiquitin-protein ligase RNF19A;E3 ubiquitin-protein ligase RNF19B yes no 2 0.016734 56.547 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38732 4124 40677 205192 208462 208462 1886 1 YEEGINIHLAK NPMINIEQLWRDYNKYEEGINIHLAKKMIE DYNKYEEGINIHLAKKMIEDRSRDYMNARR K Y E A K K 1 0 1 0 0 0 2 1 1 2 1 1 0 0 0 0 0 0 1 0 0 0 11 0 1285.6667 Q12996;E9PLP8 Q12996 193 203 CSTF3 Cleavage stimulation factor subunit 3 yes no 3 0.0069593 33.057 By matching By MS/MS By MS/MS 1 1 2 1.2666 1.2035 109.24 4 Median 5.1888 5.2382 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1339 1.1798 NaN 1 0 Median 0.72539 0.66787 86.097 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14113000 5038500 9074200 4611100 775830 3835300 0 0 0 6311700 2787500 3524200 3189900 1475100 1714700 0 0 0 0 0 0 38733 2777 40678 205193;205194;205195;205196 208463;208464;208465 208463 3 YEEIDNAPEER ITKILAEGGGAKFKKYEEIDNAPEERARGI KFKKYEEIDNAPEERARGITINAAHVEYST K Y E E R A 1 1 1 1 0 0 4 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 11 0 1363.5892 P49411 P49411 92 102 TUFM Elongation factor Tu, mitochondrial yes yes 2 5.8545E-05 152.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.0091 0.8506 10.075 5 Median 0.85542 0.81471 NaN 1 0 Median 1.03 0.88265 5.2294 2 0 Median 0.75678 0.76049 NaN 1 0 Median 1.1342 0.98527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34783000 17686000 17098000 13380000 6937100 6443100 13928000 6809300 7118400 3453300 1810300 1642900 4022100 2128900 1893200 0 0 0 0 0 0 38734 2382 40679 205197;205198;205199;205200;205201 208466;208467;208468;208469;208470;208471;208472;208473;208474;208475 208466 10 YEEIVKEVSTYIK VNKMDSTEPPYSQKRYEEIVKEVSTYIKKI KRYEEIVKEVSTYIKKIGYNPDTVAFVPIS R Y E I K K 0 0 0 0 0 0 3 0 0 2 0 2 0 0 0 1 1 0 2 2 0 0 13 1 1599.8396 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 167 179 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2;3 0.00010091 133.07 By MS/MS By matching By MS/MS By matching 7 1 2 1 1.0383 1.1006 19.03 11 Median 1.165 1.1458 20.904 7 0 Median NaN NaN NaN 0 0 Median 1.0383 1.0913 NaN 1 0 Median 1.1052 1.0497 11.012 2 0 Median NaN NaN NaN 0 0 Median 0.90937 0.81048 NaN 1 0 Median 86263000 40398000 45865000 72624000 34116000 38507000 0 0 0 3914800 1562600 2352200 9440600 4566600 4874000 0 0 0 284370 152650 131720 38735 2632 40680 205202;205203;205204;205205;205206;205207;205208;205209;205210;205211;205212 208476;208477;208478;208479;208480;208481;208482 208478 7 YEEIVKEVSTYIKK VNKMDSTEPPYSQKRYEEIVKEVSTYIKKI RYEEIVKEVSTYIKKIGYNPDTVAFVPISG R Y E K K I 0 0 0 0 0 0 3 0 0 2 0 3 0 0 0 1 1 0 2 2 0 0 14 2 1727.9346 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01 P68104 167 180 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 3;4 0.00011884 72.321 By MS/MS By matching 5 1 1.0369 1.1069 76.374 6 Median 1.1065 1.2965 85.327 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95974 0.92253 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44651000 20016000 24635000 42491000 18753000 23738000 0 0 0 0 0 0 2160000 1263000 897020 0 0 0 0 0 0 38736 2632 40681 205213;205214;205215;205216;205217;205218 208483;208484;208485 208483 3 YEELFPAFSDSR HFCIDMLNAKLAVQKYEELFPAFSDSRECK VQKYEELFPAFSDSRECKLMKKLLEAHEEQ K Y E S R E 1 1 0 1 0 0 2 0 0 0 1 0 0 2 1 2 0 0 1 0 0 0 12 0 1459.662 M0R0Y2;P54920;M0R2M1;M0R213;M0R0I4 M0R0Y2 189 200 NAPA Alpha-soluble NSF attachment protein yes no 2 0.026912 29.743 By MS/MS By MS/MS By matching 1 1 1 1.1992 1.0104 10.742 3 Median 0.87071 0.84377 NaN 1 0 Median 1.2108 1.0218 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1992 1.0104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3010900 1416000 1595000 1124400 607890 516520 1744200 722890 1021300 0 0 0 142350 85206 57141 0 0 0 0 0 0 38737 1430 40682 205219;205220;205221 208486;208487;208488 208487 3 YEELQITAGR AQKSKAEAESLYQSKYEELQITAGRHGDSV LYQSKYEELQITAGRHGDSVRNSKIEISEL K Y E G R H 1 1 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1178.5932 P04264;CON__P04264 P04264 377 386 KRT1 Keratin, type II cytoskeletal 1 no no 2 8.2531E-60 208.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 11 12 11 13 8 8 0.015496 0.013883 123.28 61 Median 0.028004 0.026081 113.81 11 11 Median 0.013764 0.011664 115.6 12 12 Median 0.018036 0.019852 99.007 11 11 Median 0.0075978 0.0059676 99.699 13 13 Median 0.017855 0.018044 122.88 8 8 Median 0.010552 0.008145 119.08 6 6 Median 6647700000 6452100000 195590000 1204900000 1152300000 52597000 1086200000 1060000000 26286000 914070000 874380000 39687000 1294000000 1283600000 10387000 1384700000 1325200000 59531000 763750000 756650000 7099800 + 38738 1848 40683 205222;205223;205224;205225;205226;205227;205228;205229;205230;205231;205232;205233;205234;205235;205236;205237;205238;205239;205240;205241;205242;205243;205244;205245;205246;205247;205248;205249;205250;205251;205252;205253;205254;205255;205256;205257;205258;205259;205260;205261;205262;205263;205264;205265;205266;205267;205268;205269;205270;205271;205272;205273;205274;205275;205276;205277;205278;205279;205280;205281;205282;205283;205284 208489;208490;208491;208492;208493;208494;208495;208496;208497;208498;208499;208500;208501;208502;208503;208504;208505;208506;208507;208508;208509;208510;208511;208512;208513;208514;208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526;208527;208528;208529;208530;208531;208532;208533;208534;208535;208536;208537;208538;208539;208540;208541;208542;208543;208544;208545;208546;208547;208548;208549;208550;208551;208552;208553;208554;208555;208556;208557;208558;208559;208560;208561;208562;208563;208564;208565;208566;208567;208568;208569;208570;208571;208572;208573;208574;208575;208576;208577;208578;208579;208580;208581;208582;208583;208584;208585;208586;208587;208588;208589;208590;208591;208592;208593;208594;208595;208596;208597;208598;208599;208600;208601;208602;208603;208604;208605;208606;208607;208608;208609;208610;208611;208612;208613;208614 208531 126 YEELQITAGRHGDSVR AQKSKAEAESLYQSKYEELQITAGRHGDSV EELQITAGRHGDSVRNSKIEISELNRVIQR K Y E V R N 1 2 0 1 0 1 2 2 1 1 1 0 0 0 0 1 1 0 1 1 0 0 16 1 1829.902 P04264;CON__P04264 P04264 377 392 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 2.4031E-05 66.246 By MS/MS 2 0.21011 0.19581 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.21011 0.19581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2303300 2150100 153140 0 0 0 0 0 0 0 0 0 2303300 2150100 153140 0 0 0 0 0 0 + 38739 1848 40684 205285;205286 208615;208616 208616 2 YEELQQTAGR ANRSRTEAESWYQTKYEELQQTAGRHGDDL WYQTKYEELQQTAGRHGDDLRNTKHEISEM K Y E G R H 1 1 0 0 0 2 2 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1193.5677 CON__P13647;P13647;H0YI76;H0YIN9 CON__P13647 365 374 KRT5 Keratin, type II cytoskeletal 5 no no 2 3.3727E-35 179.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 8 1 10 3 4 0.099304 0.090042 83.994 19 Median 0.089532 0.090775 NaN 1 1 Median 0.099304 0.083437 53.236 5 5 Median NaN NaN NaN 0 0 Median 0.094228 0.081128 115.53 8 8 Median 0.24048 0.25467 2.2642 2 2 Median 0.086841 0.074891 37.173 3 3 Median 55143000 51957000 3185800 6286400 6122400 164010 14355000 13450000 904920 822360 822360 0 15429000 13905000 1524400 5823300 5628800 194550 12426000 12028000 397860 + 38740 757 40685 205287;205288;205289;205290;205291;205292;205293;205294;205295;205296;205297;205298;205299;205300;205301;205302;205303;205304;205305;205306;205307;205308;205309;205310;205311;205312;205313;205314;205315;205316 208617;208618;208619;208620;208621;208622;208623;208624;208625;208626;208627;208628;208629;208630;208631;208632;208633;208634;208635;208636;208637;208638;208639;208640;208641;208642;208643;208644;208645;208646;208647 208622 31 YEELQSLAGK ANRSRAEAESMYQIKYEELQSLAGKHGDDL MYQIKYEELQSLAGKHGDDLRRTKTEISEM K Y E G K H 1 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1136.5714 P05787;CON__P05787;CON__H-INV:HIT000292931 P05787 286 295 KRT8 Keratin, type II cytoskeletal 8 yes no 2 1.0234E-05 152.47 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 5 4 5 7 1.2407 1.1182 25.904 26 Median 1.079 0.98408 55.594 3 0 Median 1.5333 1.299 21.818 2 0 Median 1.1782 1.1214 33.865 5 1 Median 1.4133 1.2958 18.089 4 0 Median 1.3406 1.363 8.2103 5 0 Median 1.2019 0.98586 6.771 7 0 Median 2035700000 881770000 1153900000 183500000 80769000 102730000 148030000 54530000 93499000 641360000 284990000 356360000 324200000 141570000 182630000 395800000 160780000 235020000 342820000 159140000 183680000 + 38741 750 40686 205317;205318;205319;205320;205321;205322;205323;205324;205325;205326;205327;205328;205329;205330;205331;205332;205333;205334;205335;205336;205337;205338;205339;205340;205341;205342 208648;208649;208650;208651;208652;208653;208654;208655;208656;208657;208658;208659;208660;208661;208662;208663;208664;208665;208666;208667;208668;208669;208670;208671;208672;208673;208674;208675;208676;208677;208678;208679;208680;208681;208682;208683;208684;208685;208686;208687;208688 208674 41 YEELQVTAGK AQRSRAEAEAWYQTKYEELQVTAGKHGDNL WYQTKYEELQVTAGKHGDNLRDTKNEIAEL K Y E G K H 1 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1136.5714 CON__Q5XKE5;Q5XKE5 CON__Q5XKE5 341 350 KRT79 Keratin, type II cytoskeletal 79 no no 2 0.00036244 87.308 By MS/MS By MS/MS By MS/MS 2 2 1 1.3201 1.1133 18.995 5 Median NaN NaN NaN 0 0 Median 1.5333 1.299 21.818 2 0 Median NaN NaN NaN 0 0 Median 1.295 1.1348 14.086 2 0 Median NaN NaN NaN 0 0 Median 1.1474 0.92624 NaN 1 0 Median 590910000 254180000 336730000 0 0 0 148030000 54530000 93499000 0 0 0 217410000 93316000 124090000 0 0 0 225480000 106340000 119140000 + 38742 786 40687 205343;205344;205345;205346;205347 208689;208690;208691;208692;208693;208694 208694 6 YEELQVTAGR AQRSRAEAESWYQTKYEELQVTAGRHGDDL WYQTKYEELQVTAGRHGDDLRNTKQEIAEI K Y E G R H 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1164.5775 CON__P02538;P02538;CON__P04259;CON__P48668;P48668 CON__P02538 360 369 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 5.3202E-12 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 4 4 2 2 0.24355 0.19629 131.4 14 Median 0.8488 0.83071 181.15 3 3 Median 0.18624 0.15947 142.14 4 4 Median NaN NaN NaN 0 0 Median 0.13672 0.10882 76.469 4 4 Median 1.3348 1.3268 NaN 1 1 Median 0.27068 0.20768 17.88 2 2 Median 99422000 55897000 43525000 39573000 18276000 21297000 12299000 8859700 3439300 0 0 0 12183000 9776200 2406400 32344000 16522000 15822000 3023400 2463800 559580 + 38743 741;748;766 40688 205348;205349;205350;205351;205352;205353;205354;205355;205356;205357;205358;205359;205360;205361;205362;205363;205364;205365 208695;208696;208697;208698;208699;208700;208701;208702;208703;208704;208705;208706;208707;208708;208709;208710;208711;208712 208709 18 YEELQVTVGR AQRSKEEAEALYHSKYEELQVTVGRHGDSL LYHSKYEELQVTVGRHGDSLKEIKIEISEL K Y E G R H 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 2 0 0 10 0 1192.6088 CON__P35908;CON__P35908v2;P35908 CON__P35908 381 390 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 4.4387E-73 214.12 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 11 8 10 4 4 0.04118 0.033946 110 44 Median 0.043343 0.040683 124.84 9 6 Median 0.025796 0.022298 107.07 11 10 Median 0.063183 0.068607 41.114 6 6 Median 0.029348 0.022787 111.15 10 10 Median 0.068414 0.070437 105.58 4 4 Median 0.029162 0.022283 73.57 4 4 Median 1362600000 1293300000 69346000 393930000 368120000 25808000 346000000 332170000 13829000 121230000 112240000 8991800 323080000 309390000 13697000 111830000 106210000 5617100 66571000 65167000 1403700 + 38744 764;765 40689 205366;205367;205368;205369;205370;205371;205372;205373;205374;205375;205376;205377;205378;205379;205380;205381;205382;205383;205384;205385;205386;205387;205388;205389;205390;205391;205392;205393;205394;205395;205396;205397;205398;205399;205400;205401;205402;205403;205404;205405;205406;205407;205408;205409;205410;205411 208713;208714;208715;208716;208717;208718;208719;208720;208721;208722;208723;208724;208725;208726;208727;208728;208729;208730;208731;208732;208733;208734;208735;208736;208737;208738;208739;208740;208741;208742;208743;208744;208745;208746;208747;208748;208749;208750;208751;208752;208753;208754;208755;208756;208757;208758;208759;208760;208761;208762;208763;208764;208765;208766;208767;208768;208769;208770;208771;208772;208773;208774 208713 62 YEESLADSDNK ACTQLVDNLVEHILKYEESLADSDNKGVNS HILKYEESLADSDNKGVNSGRLVACITTLF K Y E N K G 1 0 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1269.5361 A0A590UJS4;Q6KC79 A0A590UJS4 1985 1995 NIPBL Nipped-B-like protein yes no 2 0.00029355 72.643 By MS/MS By MS/MS By MS/MS 2 1 1 0.87454 0.96777 11.776 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87454 0.96777 7.8995 2 0 Median 1.2441 1.1232 NaN 1 0 Median 0.81567 0.86182 NaN 1 0 Median NaN NaN NaN 0 0 Median 4251600 2134800 2116900 0 0 0 0 0 0 2119400 1122500 996930 464970 215690 249280 1667200 796590 870640 0 0 0 38745 488 40690 205412;205413;205414;205415 208775;208776;208777 208776 3 YEETVFYGLQYILNK CREKKTENSKLRKVKYEETVFYGLQYILNK YEETVFYGLQYILNKYLKGKVVTKEKIQEA K Y E N K Y 0 0 1 0 0 1 2 1 0 1 2 1 0 1 0 0 1 0 3 1 0 0 15 0 1878.9404 P43490;A0A0C4DFS8;C9JG65 P43490 54 68 NAMPT Nicotinamide phosphoribosyltransferase yes no 2 0.034239 24.855 By MS/MS 2 1.0587 1.0339 7.8526 2 Median NaN NaN NaN 0 0 Median 1.0587 1.0339 7.8526 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 922830 420650 502180 0 0 0 922830 420650 502180 0 0 0 0 0 0 0 0 0 0 0 0 38746 2326 40691 205416;205417 208778 208778 1 YEEVEYYYQR KQLNNLALLCQNQGKYEEVEYYYQRALEIY QNQGKYEEVEYYYQRALEIYQTKLGPDDPN K Y E Q R A 0 1 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 4 1 0 0 10 0 1440.6198 G5E9S8;G3V2E7;F8W6L3;G3V3H3;G3V5R9;E7EVH7;Q07866 G5E9S8 353 362 KLC1 Kinesin light chain 1 yes no 2 0.00066319 96.711 By MS/MS By MS/MS By matching 1 2 1 1.3063 1.1334 84.368 4 Median 0.93178 0.924 NaN 1 1 Median 2.4954 2.2151 126.61 2 0 Median NaN NaN NaN 0 0 Median 1.6334 1.3904 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6544500 3033200 3511300 3143600 1641200 1502400 3057000 1277600 1779400 0 0 0 343960 114460 229500 0 0 0 0 0 0 38747 896 40692 205418;205419;205420;205421 208779;208780;208781 208779 3 YEFGESDLR IQERLRYAPLGWSKKYEFGESDLRSACDTV LGWSKKYEFGESDLRSACDTVDTWLDDTAK K Y E L R S 0 1 0 1 0 0 2 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 9 0 1114.4931 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y542;A0A2R8Y6I5 Q14204 4205 4213 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.0017097 78.516 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.122 1.1207 10.483 4 Median 1.1335 1.1319 NaN 1 0 Median 1.1105 0.94319 NaN 1 0 Median 1.0385 1.1097 NaN 1 0 Median 1.3881 1.2067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16174000 7494100 8680300 5848100 2861300 2986700 3604100 1507400 2096700 6074600 2853300 3221200 647630 271990 375640 0 0 0 0 0 0 38748 2865 40693 205422;205423;205424;205425 208782;208783;208784;208785;208786 208782 5 YEGFFGLYR LMYKNSFDCFKKVLRYEGFFGLYRGLLPQL FKKVLRYEGFFGLYRGLLPQLLGVAPEKAI R Y E Y R G 0 1 0 0 0 0 1 2 0 0 1 0 0 2 0 0 0 0 2 0 0 0 9 0 1150.5447 O75746;Q9UJS0 Q9UJS0 384 392 SLC25A12;SLC25A13 Calcium-binding mitochondrial carrier protein Aralar1;Calcium-binding mitochondrial carrier protein Aralar2 no no 2 0.012368 46.426 By MS/MS By matching By matching By matching 1 1 1 1 1.1054 1.0586 9.7164 4 Median 0.93765 0.89954 NaN 1 0 Median 1.277 1.1044 NaN 1 0 Median 0.97808 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2494 1.1048 NaN 1 0 Median 10545000 5379100 5166300 7571400 3940400 3631000 1944900 925600 1019300 919490 460110 459370 0 0 0 0 0 0 109690 52998 56697 38749 4297;1694 40694 205426;205427;205428;205429 208787;208788 208788 2 YEGGYPALTEVMNK NTWYGEQDQAVHLWRYEGGYPALTEVMNKL RYEGGYPALTEVMNKLRENKEFLEFRKARS R Y E N K L 1 0 1 0 0 0 2 2 0 0 1 1 1 0 1 0 1 0 2 1 0 0 14 0 1570.7337 O75323;H7C333 O75323 130 143 GBAS Protein NipSnap homolog 2 yes no 2 0.00052445 68.069 By MS/MS By MS/MS By matching 1 1 1 0.93869 0.88517 32.113 3 Median 0.86136 0.7993 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93869 0.88517 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4177 1.4567 NaN 1 0 Median NaN NaN NaN 0 0 Median 27650000 13515000 14134000 20874000 10652000 10222000 0 0 0 5581500 2457800 3123700 0 0 0 1194500 405380 789070 0 0 0 38750 1658 40695 205430;205431;205432 208789;208790;208791;208792;208793;208794;208795;208796 208792 8 YEGLMGKPSILTYQYAEDLIR CLETIYQKVTGKELRYEGLMGKPSILTYQY KPSILTYQYAEDLIRRQAERRGWAAPIRKL R Y E I R R 1 1 0 1 0 1 2 2 0 2 3 1 1 0 1 1 1 0 3 0 0 0 21 1 2459.2406 Q9BXW7 Q9BXW7 273 293 CECR5 Cat eye syndrome critical region protein 5 yes yes 3 0.00035596 29.444 By MS/MS 1 1.2694 1.192 NaN 1 Median NaN NaN NaN 0 0 Median 1.2694 1.192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4183800 2024400 2159400 0 0 0 4183800 2024400 2159400 0 0 0 0 0 0 0 0 0 0 0 0 38751 3882 40696 205433 208797;208798 208797 2 YEHDDIVSTVSVLSSGTQAVSGSK ELDENETLIVSKFCKYEHDDIVSTVSVLSS VSVLSSGTQAVSGSKDICIKVWDLAQQVVL K Y E S K D 1 0 0 2 0 1 1 2 1 1 1 1 0 0 0 6 2 0 1 4 0 0 24 0 2465.1922 Q9BQA1;H0Y711 Q9BQA1 122 145 WDR77 Methylosome protein 50 yes no 3 0.0026318 24.896 By MS/MS By matching By matching 1 1 1 1.1128 0.98823 7.4346 3 Median 1.1992 1.12 NaN 1 0 Median 1.1128 0.98823 NaN 1 0 Median 0.88906 0.98146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9033600 4180800 4852800 3966600 1803800 2162700 566650 165370 401280 4500400 2211600 2288800 0 0 0 0 0 0 0 0 0 38752 3787 40697 205434;205435;205436 208799 208799 1 YEIEDMNVALGR Y E G R 1 1 1 1 0 0 2 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 12 0 1408.6657 REV__Q5TI25 yes yes 2 0.0039681 67.993 By MS/MS 1 1.0392 1.1424 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0392 1.1424 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21092000 9413300 11678000 0 0 0 0 0 0 21092000 9413300 11678000 0 0 0 0 0 0 0 0 0 + 38753 4545 40698 205437 208800 208800 2009 1 YEIEETETVTK ETTEKEEKSESRQERYEIEETETVTKSYQK RQERYEIEETETVTKSYQKNDWRDAEENKK R Y E T K S 0 0 0 0 0 0 4 0 0 1 0 1 0 0 0 0 3 0 1 1 0 0 11 0 1340.6347 E9PGZ1;E7EX44;Q05682;C9J813 E9PGZ1 154 164 CALD1 Caldesmon yes no 2 0.00012004 120.68 By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 0.91568 0.79225 36.08 6 Median NaN NaN NaN 0 0 Median 0.99716 0.86751 13.744 2 0 Median 1.0437 1.0473 NaN 1 0 Median 0.90848 0.77946 3.212 2 0 Median NaN NaN NaN 0 0 Median 0.45209 0.37671 NaN 1 0 Median 45870000 23915000 21955000 0 0 0 6056300 2947100 3109200 17564000 8961300 8603100 21441000 11437000 10004000 0 0 0 807940 569270 238670 38754 928 40699 205438;205439;205440;205441;205442;205443 208801;208802;208803;208804;208805;208806;208807;208808;208809 208806 9 YEIEHCLANK YAILPDGEVVGDSARYEIEHCLANKVGLNF GDSARYEIEHCLANKVGLNFSPGQSFPASQ R Y E N K V 1 0 1 0 1 0 2 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 10 0 1275.5918 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 558 567 yes yes 2 0.00096343 101.25 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1776000 1776000 0 0 0 0 1776000 1776000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 38755 734 40700 205444 208810 208810 1 YEIKDIHVPPR AINQAADCWGIRCLRYEIKDIHVPPRVKES RCLRYEIKDIHVPPRVKESMQMQVEAERRK R Y E P R V 0 1 0 1 0 0 1 0 1 2 0 1 0 0 2 0 0 0 1 1 0 0 11 1 1365.7405 Q9UJZ1;A0A087WYB4 Q9UJZ1 175 185 STOML2 Stomatin-like protein 2, mitochondrial yes no 3 0.00032301 81.865 By MS/MS 1 0.90865 0.97346 NaN 1 Median 0.90865 0.97346 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5171300 2523400 2647900 5171300 2523400 2647900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38756 4304 40701 205445 208811 208811 1 YEILTPNAIPK QGFPNRIVFQEFRQRYEILTPNAIPKGFMD FRQRYEILTPNAIPKGFMDGKQACERMIRA R Y E P K G 1 0 1 0 0 0 1 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 11 0 1257.6969 Q7Z406;P35580 P35580 728 738 MYH14;MYH10 Myosin-14;Myosin-10 no no 2 0.013325 37.476 By MS/MS By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 2 0.78271 0.70015 22.452 8 Median 0.89863 0.87812 31.145 2 0 Median 0.90754 0.80519 NaN 1 0 Median 0.48356 0.53851 NaN 1 0 Median 0.69059 0.62123 NaN 1 0 Median 0.56245 0.58975 NaN 1 0 Median 0.89677 0.7562 11.777 2 0 Median 31588000 18454000 13134000 15881000 8614400 7266600 4292400 2285000 2007400 5345300 3643300 1702000 200860 135810 65052 4870600 3270700 1599900 997580 504820 492760 38757 2245;3242 40702 205446;205447;205448;205449;205450;205451;205452;205453 208812;208813;208814;208815 208814 4 YEILTPNSIPK QGFPNRVVFQEFRQRYEILTPNSIPKGFMD FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Y E P K G 0 0 1 0 0 0 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 11 0 1273.6918 P35579 P35579 721 731 MYH9 Myosin-9 yes yes 2 0.00065281 65.305 By MS/MS By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1 0.82911 0.74715 29.824 6 Median 0.86947 0.83346 NaN 1 0 Median 0.81899 0.72525 NaN 1 0 Median 0.66715 0.73885 NaN 1 0 Median 0.83935 0.75554 NaN 1 0 Median 1.2781 1.5025 NaN 1 0 Median 0.77109 0.66074 NaN 1 0 Median 70392000 37894000 32498000 33439000 17068000 16371000 19430000 10532000 8898000 8661800 5139500 3522300 178070 106500 71570 6361100 3740000 2621100 2322100 1308500 1013500 38758 2244 40703 205454;205455;205456;205457;205458;205459 208816;208817;208818;208819;208820;208821;208822 208821 7 YEIMDGAPVKGESIPIR GIGPSTTTETETIAKYEIMDGAPVKGESIP IMDGAPVKGESIPIRLFLAGYDPTPTMRDV K Y E I R L 1 1 0 1 0 0 2 2 0 3 0 1 1 0 2 1 0 0 1 1 0 0 17 1 1873.9608 O75436 O75436 233 249 VPS26A Vacuolar protein sorting-associated protein 26A yes yes 3 0.00015471 42.338 By MS/MS By matching By matching 2 2 1 0.89494 0.83559 23.232 5 Median 0.89583 0.94333 18.354 2 0 Median 1.063 0.98361 23.065 2 0 Median NaN NaN NaN 0 0 Median 0.73115 0.64645 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18068000 9854300 8214100 16427000 8919700 7507300 1306500 736250 570250 0 0 0 334760 198290 136470 0 0 0 0 0 0 38759 1671 40704 205460;205461;205462;205463;205464 208823;208824 208823 2 YEISSVPTFLFFK FVKLEAEGVPEVSEKYEISSVPTFLFFKNS EKYEISSVPTFLFFKNSQKIDRLDGAHAPE K Y E F K N 0 0 0 0 0 0 1 0 0 1 1 1 0 3 1 2 1 0 1 1 0 0 13 0 1576.8177 O76003 O76003 80 92 GLRX3 Glutaredoxin-3 yes yes 2 9.7133E-07 99.568 By MS/MS By MS/MS By MS/MS By matching 2 2 2 1 1.0218 0.93208 22.836 7 Median 1.017 0.95013 2.7132 2 0 Median 0.87474 0.74314 5.4552 2 0 Median 1.2556 1.2805 9.0836 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1012 0.90366 NaN 1 0 Median 58214000 28425000 29788000 31737000 15138000 16599000 20865000 10772000 10093000 5493800 2464400 3029400 0 0 0 0 0 0 117730 51453 66278 38760 1715 40705 205465;205466;205467;205468;205469;205470;205471 208825;208826;208827;208828;208829;208830 208830 6 YEITEQR PRHQEGEIFDTEKEKYEITEQRKIDQKAVD IFDTEKEKYEITEQRKIDQKAVDSQILPKI K Y E Q R K 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 7 0 937.45051 Q02878 Q02878 240 246 RPL6 60S ribosomal protein L6 yes yes 2 0.0023826 107.66 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 1 1 1 1 1.1849 1.1121 13.444 5 Median 1.0996 1.1121 NaN 1 0 Median 1.1849 1.0333 NaN 1 0 Median 1.4947 1.4314 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98636 1.0452 NaN 1 0 Median 1.4378 1.2141 NaN 1 0 Median 21934000 9697900 12236000 1759400 848020 911340 13767000 5956800 7810500 1252100 486290 765770 0 0 0 3681700 1786900 1894800 1473200 619840 853370 38761 2703 40706 205472;205473;205474;205475;205476 208831;208832;208833;208834;208835;208836 208834 6 YEKDIAAYR DKQPYEKKAAKLKEKYEKDIAAYRAKGKPD AKLKEKYEKDIAAYRAKGKPDAAKKGVVKA K Y E Y R A 2 1 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 9 1 1127.5611 P09429;P26583 P09429 155 163 HMGB1;HMGB2 High mobility group protein B1;High mobility group protein B2 no no 2 8.9171E-12 145.34 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1 2 1.1606 1.0321 59.33 8 Median 0.99427 1.0019 NaN 1 0 Median 5.8944 5.4579 NaN 1 1 Median 0.93226 0.99035 NaN 1 0 Median 1.2321 1.1261 15.122 2 0 Median 0.87056 0.92004 NaN 1 0 Median 1.1792 1.0612 1.1509 2 0 Median 127860000 55917000 71940000 17642000 9279300 8362500 7414400 1004300 6410100 56527000 27384000 29144000 40422000 15486000 24936000 3647200 1851200 1796000 2203500 912120 1291400 38762 1915;2146 40707 205477;205478;205479;205480;205481;205482;205483;205484;205485 208837;208838;208839;208840;208841;208842;208843;208844;208845;208846;208847;208848;208849 208845 13 YEKDVADYK EKQPYITKAAKLKEKYEKDVADYKSKGKFD AKLKEKYEKDVADYKSKGKFDGAKGPAKVA K Y E Y K S 1 0 0 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 2 1 0 0 9 1 1129.5292 E7ES08;E7EQU1;O15347 E7ES08 153 161 HMGB3 High mobility group protein B3 yes no 2 0.023072 59.35 By matching By MS/MS 1 1 1.2146 1.1511 6.5183 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1011 1.0992 NaN 1 0 Median 1.3398 1.2054 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5871800 2728700 3143100 0 0 0 0 0 0 4630200 2185200 2445000 1241700 543500 698160 0 0 0 0 0 0 38763 880 40708 205486;205487 208850 208850 1 YEKEKFEEMIQQIK KLDVTSVEDYKALQKYEKEKFEEMIQQIKE KYEKEKFEEMIQQIKETGANLAICQWGFDD K Y E I K E 0 0 0 0 0 2 4 0 0 2 0 3 1 1 0 0 0 0 1 0 0 0 14 2 1841.9233 P48643;B7ZAR1;E9PCA1;E7ENZ3 P48643 280 293 CCT5 T-complex protein 1 subunit epsilon yes no 3 0.00033981 51.211 By MS/MS 1 1.204 1.2286 NaN 1 Median 1.204 1.2286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21823000 9943400 11880000 21823000 9943400 11880000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38764 2364 40709 205488 208851;208852 208852 2 YELDTWYHSPYPEEYAR ITEGSNMIKTIAFGRYELDTWYHSPYPEEY LDTWYHSPYPEEYARLGRLYMCEFCLKYMK R Y E A R L 1 1 0 1 0 0 3 0 1 0 1 0 0 0 2 1 1 1 4 0 0 0 17 0 2217.9643 O95251;E7EUP3 O95251 345 361 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase yes no 3 1.942E-05 50.079 By MS/MS 1 0.67118 0.71018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67118 0.71018 NaN 1 0 Median NaN NaN NaN 0 0 Median 3002600 1985400 1017200 0 0 0 0 0 0 0 0 0 0 0 0 3002600 1985400 1017200 0 0 0 38765 1759 40710 205489 208853 208853 1 YELGRPAANTK RKTGGKRKPYHKKRKYELGRPAANTKIGPR KKRKYELGRPAANTKIGPRRIHTVRVRGGC K Y E T K I 2 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 11 1 1218.6357 Q5JR95;P62241 Q5JR95 27 37 RPS8 40S ribosomal protein S8 yes no 2;3 0.00080144 91.867 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 2 2 2 3 1.0739 1.0197 30.788 14 Median 0.98052 1.0251 7.8178 3 0 Plateau 1.0487 0.97296 6.1097 2 0 Median 1.1217 1.1532 29.987 2 0 Median 0.70502 0.63607 64.597 2 0 Median 1.1261 1.191 9.5101 2 0 Median 1.2163 1.0903 21.381 3 0 Median 45663000 21770000 23893000 16201000 7768500 8432900 11099000 5647000 5452200 4333100 1859300 2473800 927250 498310 428950 10966000 5071800 5893700 2137000 925340 1211700 38766 2573 40711 205490;205491;205492;205493;205494;205495;205496;205497;205498;205499;205500;205501;205502;205503 208854;208855;208856;208857;208858;208859;208860;208861;208862 208856 9 YELISETGGSHDKR KNPVMELNEKRRGLKYELISETGGSHDKRF KYELISETGGSHDKRFVMEVEVDGQKFQGA K Y E K R F 0 1 0 1 0 0 2 2 1 1 1 1 0 0 0 2 1 0 1 0 0 0 14 1 1590.7638 Q12906;Q96SI9 Q12906 541 554 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2;3;4 1.4115E-08 127.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 5 7 6 6 5 1.1105 1.0948 13.206 26 Median 1.4944 1.5451 NaN 1 0 Median 1.1037 1.1229 7.7004 4 0 Linear 0.9435 1.057 14.068 6 0 Median 1.2336 1.1487 7.049 5 0 Median 1.0286 1.215 13.831 5 1 Linear 1.1555 1.0279 5.8469 5 3 Median 255260000 119920000 135340000 939470 355470 584000 26868000 12060000 14808000 70740000 31930000 38810000 28073000 11707000 16366000 108990000 54879000 54106000 19654000 8987200 10667000 38767 2769;3734 40712 205504;205505;205506;205507;205508;205509;205510;205511;205512;205513;205514;205515;205516;205517;205518;205519;205520;205521;205522;205523;205524;205525;205526;205527;205528;205529;205530;205531;205532;205533;205534 208863;208864;208865;208866;208867;208868;208869;208870;208871;208872;208873;208874;208875;208876;208877;208878;208879;208880;208881;208882;208883;208884;208885;208886;208887;208888;208889;208890;208891;208892;208893;208894;208895;208896;208897;208898;208899;208900;208901 208887 38 YELLEHK RARLPEELRSLVQKRYELLEHKKRWASMSE LRSLVQKRYELLEHKKRWASMSEEQRKEYL R Y E H K K 0 0 0 0 0 0 2 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 930.48108 Q9UIG0 Q9UIG0 526 532 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.016334 68.915 By matching By MS/MS By MS/MS 1 1 1 0.96751 1.0123 7.3766 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78097 0.87439 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96751 1.0123 NaN 1 0 Median 1.1562 0.95524 NaN 1 0 Median 9896600 4770800 5125800 0 0 0 0 0 0 876880 445520 431370 0 0 0 7436300 3714200 3722100 1583400 611020 972400 38768 4290 40713 205535;205536;205537 208902;208903 208902 2 YELLSEENKENGIIK VTDRHIWRSALESGRYELLSEENKENGIIK YELLSEENKENGIIKTVNEDVEEMEIDEQT R Y E I K T 0 0 2 0 0 0 4 1 0 2 2 2 0 0 0 1 0 0 1 0 0 0 15 1 1777.9098 Q9NRL2 Q9NRL2 1015 1029 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 0.033343 17.402 By MS/MS By matching 1 1 0.99663 1.1609 28.692 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82088 0.94772 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.21 1.422 NaN 1 0 Median NaN NaN NaN 0 0 Median 6298400 2719600 3578800 0 0 0 0 0 0 5297600 2278700 3018900 0 0 0 1000800 440880 559940 0 0 0 38769 4084 40714 205538;205539 208904 208904 1 YELPAPSSGQK RLAARQPIELLSMKRYELPAPSSGQKNDIT SMKRYELPAPSSGQKNDITAWQECVNNSMA R Y E Q K N 1 0 0 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 1 0 0 0 11 0 1175.5823 O75934 O75934 87 97 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.025689 53.327 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38770 1707 40715 205540 208905 208905 1 YELQLANPK WNYNFMGVRHDPNMKYELQLANPKEFYHEV HDPNMKYELQLANPKEFYHEVHRPSHFLNF K Y E P K E 1 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1074.571 Q6P2Q9 Q6P2Q9 2294 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00074849 100.45 By MS/MS By matching By matching 2 1 1 0.9496 0.92418 15.556 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8762 0.80565 11.489 2 0 Median 0.93188 0.97744 NaN 1 0 Median 1.2413 1.0648 NaN 1 0 Median 9819900 5043600 4776300 0 0 0 0 0 0 0 0 0 4245600 2135900 2109800 4574900 2483400 2091500 999370 424380 574990 38771 3157 40716 205541;205542;205543;205544 208906;208907;208908 208907 3 YELQQLEGSSDR SEILSKKQNELKNVKYELQQLEGSSDRILE NVKYELQQLEGSSDRILELDQELIKAEREL K Y E D R I 0 1 0 1 0 2 2 1 0 0 2 0 0 0 0 2 0 0 1 0 0 0 12 0 1423.6579 Q92878;A0A1W2PQ90;A0A494C1B7;A0A494BZX5;A0A494C122;E7EN38;E7ESD9;A0A494C0Y7 Q92878 462 473 RAD50 DNA repair protein RAD50 yes no 2 3.9099E-40 187.64 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1.2205 1.0794 44.825 6 Median 1.9 1.8842 77.447 2 1 Median 1.3151 1.1209 9.1051 2 2 Median 0.97297 1.0693 NaN 1 1 Median 1.2075 1.066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74584000 33237000 41347000 19382000 6141500 13240000 6609500 2882200 3727300 36458000 18858000 17600000 12135000 5355100 6780100 0 0 0 0 0 0 38772 3561 40717 205545;205546;205547;205548;205549;205550 208909;208910;208911;208912;208913;208914 208909 6 YEMFAQTLQQSR MRFARRSVSDNDIRKYEMFAQTLQQSRGFG IRKYEMFAQTLQQSRGFGSFRFPSGNQGGA K Y E S R G 1 1 0 0 0 3 1 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 12 0 1500.7031 P55072 P55072 755 766 VCP Transitional endoplasmic reticulum ATPase yes yes 2 5.4737E-06 98.943 By MS/MS By matching 2 1 1.2282 1.1021 18.362 3 Median 1.3248 1.2869 21.917 2 0 Median 1.2282 1.0851 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9354600 4425100 4929500 8055000 3896200 4158900 1299600 528910 770640 0 0 0 0 0 0 0 0 0 0 0 0 38773 2494 40718 205551;205552;205553 208915 208915 1 YEMLQDNVEGYRR QNTKISTQLDFASKRYEMLQDNVEGYRREI KRYEMLQDNVEGYRREITSLHERNQKLTAT R Y E R R E 0 2 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 2 1 0 0 13 1 1671.7675 P12270 P12270 725 737 TPR Nucleoprotein TPR yes yes 3 1.8094E-06 88.187 By matching By MS/MS By matching 1 3 1 1.0891 1.0865 29.872 4 Median NaN NaN NaN 0 0 Median 2.0645 1.9349 NaN 1 0 Median 0.88708 1.0452 1.6469 2 1 Median 1.2327 1.1163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21529000 11071000 10458000 0 0 0 2889500 988480 1901000 17604000 9547200 8056900 1035500 535200 500300 0 0 0 0 0 0 38774 1978 40719 205554;205555;205556;205557;205558 208916;208917;208918 208918 3 YENEVALR QIDNARLAADDFRLKYENEVALRQSVEADI ADDFRLKYENEVALRQSVEADINGLRRVLD K Y E L R Q 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 992.49271 P13645;CON__P13645 P13645 238 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.8774E-19 161.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 8 7 10 9 6 3 0.21016 0.20322 143.95 43 Median 0.22816 0.21988 50.919 8 6 Median 0.16648 0.13468 87.847 7 3 Median 0.41951 0.44167 129.08 10 9 Median 0.077267 0.065736 206.65 9 8 Median 0.19025 0.18899 167.46 6 5 Median 0.091266 0.074073 106.87 3 3 Median 342970000 251800000 91172000 35905000 30529000 5376500 68925000 58455000 10471000 74894000 33965000 40929000 73315000 55648000 17667000 68662000 54839000 13823000 21273000 18367000 2906000 + 38775 756 40720 205559;205560;205561;205562;205563;205564;205565;205566;205567;205568;205569;205570;205571;205572;205573;205574;205575;205576;205577;205578;205579;205580;205581;205582;205583;205584;205585;205586;205587;205588;205589;205590;205591;205592;205593;205594;205595;205596;205597;205598;205599;205600;205601 208919;208920;208921;208922;208923;208924;208925;208926;208927;208928;208929;208930;208931;208932;208933;208934;208935;208936;208937;208938;208939;208940;208941;208942;208943;208944;208945;208946;208947;208948;208949;208950;208951;208952;208953;208954;208955;208956;208957;208958;208959 208957 41 YENGAFQER QLADAAKRGAFGHERYENGAFQERALRCFH AFGHERYENGAFQERALRCFHQLMKDTTLN R Y E E R A 1 1 1 0 0 1 2 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1112.4887 P23919;H7BZ20;H7C312 P23919 151 159 DTYMK Thymidylate kinase yes no 2 0.0078737 50.607 By MS/MS By MS/MS 1 1 1.0223 0.91764 37.656 2 Median 0.74546 0.70313 NaN 1 0 Median 1.4019 1.1976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3201600 1597000 1604600 2486100 1332500 1153600 715540 264500 451040 0 0 0 0 0 0 0 0 0 0 0 0 38776 2120 40721 205602;205603 208960;208961;208962 208960 3 YEPVAEIGVGAYGTVYK ______________________________ PVAEIGVGAYGTVYKARDPHSGHFVALKSV R Y E Y K A 2 0 0 0 0 0 2 3 0 1 0 1 0 0 1 0 1 0 3 3 0 0 17 0 1814.9091 P11802;F8VYH9;F8VTV8;F8VWX7;Q96BE9;F8W1L8;F8VYY1 P11802 6 22 CDK4 Cyclin-dependent kinase 4 yes no 2 2.2186E-05 61.375 By MS/MS By matching By matching 1 1 1 1.08 1.0318 6.2364 3 Plateau 1.1197 1.0318 NaN 1 0 Median 1.08 0.91205 NaN 1 0 Median 1.0212 0.98585 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15499000 7252900 8246300 12237000 5639400 6598000 1563700 712190 851530 1698000 901250 796780 0 0 0 0 0 0 0 0 0 38777 1971 40722 205604;205605;205606 208963;208964 208964 2 YEQGFITDPVVLSPK CTPEFQANEVRKVKKYEQGFITDPVVLSPK YEQGFITDPVVLSPKDRVRDVFEAKARHGF K Y E P K D 0 0 0 1 0 1 1 1 0 1 1 1 0 1 2 1 1 0 1 2 0 0 15 0 1691.877 P12268;H0Y4R1;E7ETK5 P12268 110 124 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0003337 53.569 By MS/MS By matching 2 2 0.79332 0.68686 10.768 4 Median 0.73476 0.69116 17.997 2 0 Median 0.79332 0.68686 4.8538 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10597000 5774900 4822000 8703800 4707400 3996400 1893000 1067400 825600 0 0 0 0 0 0 0 0 0 0 0 0 38778 1148 40723 205607;205608;205609;205610 208965;208966 208965 2 YEQGTGCWQGPNR GSWIGPDHDKFSAMKYEQGTGCWQGPNRST MKYEQGTGCWQGPNRSTTVRLLCGKETMVT K Y E N R S 0 1 1 0 1 2 1 3 0 0 0 0 0 0 1 0 1 1 1 0 0 0 13 0 1551.6525 K7ELL7;P14314;A0A0C4DGP4 K7ELL7 472 484 PRKCSH Glucosidase 2 subunit beta yes no 2 4.2058E-05 138.66 By matching By MS/MS 1 1 0.86414 0.80886 34.233 2 Median 0.62713 0.63496 NaN 1 0 Median 1.1907 1.0304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10883000 5117100 5765500 1793600 826560 967040 9088900 4290500 4798400 0 0 0 0 0 0 0 0 0 0 0 0 38779 1378 40724 205611;205612 208967;208968 208967 2 YEQVDLVGK PQWVYKVAKKYMKSRYEQVDLVGKMTQKAA KYMKSRYEQVDLVGKMTQKAATTVEHLAIQ R Y E G K M 0 0 0 1 0 1 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1049.5393 Q9BQ39;A0A087WVC1 Q9BQ39 345 353 DDX50 ATP-dependent RNA helicase DDX50 yes no 2 0.05133 44.349 By MS/MS 1 0.85261 0.87981 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85261 0.87981 NaN 1 1 Median NaN NaN NaN 0 0 Median 2331700 1114200 1217400 0 0 0 0 0 0 0 0 0 0 0 0 2331700 1114200 1217400 0 0 0 38780 3781 40725 205613 208969 208969 1 YESGDHVAVYPANDSALVNQLGK HLMHLELDISDSKIRYESGDHVAVYPANDS VYPANDSALVNQLGKILGADLDVVMSLNNL R Y E G K I 3 0 2 2 0 1 1 2 1 0 2 1 0 0 1 2 0 0 2 3 0 0 23 0 2446.1765 P16435;H0Y4R2;E7EMD0 P16435 314 336 POR NADPH--cytochrome P450 reductase yes no 3 7.3196E-16 63.184 By MS/MS By matching 1 2 0.84144 0.76018 4.9101 3 Median 0.77298 0.70793 NaN 1 0 Median 0.87043 0.76895 1.6227 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10038000 5405700 4632000 8132800 4515300 3617500 1904900 890310 1014500 0 0 0 0 0 0 0 0 0 0 0 0 38781 2030 40726 205614;205615;205616 208970;208971 208971 2 YESLELCRPVLQQGR LQYFGILLDQGQLNKYESLELCRPVLQQGR YESLELCRPVLQQGRKQLLEKWLKEDKLEC K Y E G R K 0 2 0 0 1 2 2 1 0 0 3 0 0 0 1 1 0 0 1 1 0 0 15 1 1846.936 A0A087WVQ6;Q00610 A0A087WVQ6 434 448 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 0.0031226 44.457 By MS/MS 1 1.2483 1.2606 NaN 1 Median NaN NaN NaN 0 0 Median 1.2483 1.2606 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8299500 3393600 4905900 0 0 0 8299500 3393600 4905900 0 0 0 0 0 0 0 0 0 0 0 0 38782 44 40727 205617 208972 208972 1 YESLTDPSK RELISNSSDALDKIRYESLTDPSKLDSGKE ALDKIRYESLTDPSKLDSGKELHINLIPNK R Y E S K L 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 2 1 0 1 0 0 0 9 0 1038.487 P07900;G3V2J8;P08238;Q58FF7;Q58FF6;Q58FF8 P07900 61 69 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB4P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Putative heat shock protein HSP 90-beta 2 no no 2 7.4362E-05 149.65 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 1 0.96164 0.85105 11.447 6 Median 0.94525 0.83483 NaN 1 0 Median 0.98737 0.85105 1.3029 2 0 Median 0.9719 1.0434 6.3553 2 0 Median 0.96138 0.83379 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123940000 61649000 62288000 32538000 16597000 15941000 84247000 41451000 42796000 4687200 2428400 2258800 2464000 1172000 1292000 0 0 0 0 0 0 38783 1894;1899;3040;3039 40728 205618;205619;205620;205621;205622;205623 208973;208974;208975;208976;208977;208978;208979;208980;208981;208982;208983 208980 11 YESLTDPSKLDSGK RELISNSSDALDKIRYESLTDPSKLDSGKE RYESLTDPSKLDSGKELHINLIPNKQDRTL R Y E G K E 0 0 0 2 0 0 1 1 0 0 2 2 0 0 1 3 1 0 1 0 0 0 14 1 1538.7464 P07900;G3V2J8;P08238;Q58FF7;Q58FF8 P07900 61 74 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 2;3 5.9408E-09 132.32 By MS/MS By MS/MS By MS/MS By matching 2 2 3 1 1.0419 1.0623 14.502 8 Median 1.0419 1.0623 0.23756 2 0 Median 1.0295 0.99773 0.33434 2 0 Median 1.0446 1.1934 21.539 3 1 Median 1.1289 1.1028 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 252640000 121840000 130800000 180320000 86476000 93841000 44198000 21231000 22967000 27032000 13703000 13329000 1088300 426990 661300 0 0 0 0 0 0 38784 1894;1899;3040 40729 205624;205625;205626;205627;205628;205629;205630;205631 208984;208985;208986;208987;208988;208989;208990;208991;208992;208993;208994;208995;208996;208997;208998;208999;209000 208996 17 YESLTDPSKLDSGKELK RELISNASDALDKIRYESLTDPSKLDSGKE SLTDPSKLDSGKELKIDIIPNPQERTLTLV R Y E L K I 0 0 0 2 0 0 2 1 0 0 3 3 0 0 1 3 1 0 1 0 0 0 17 2 1908.968 P08238;Q58FF7;Q58FF8 P08238 56 72 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 3 1.075E-05 51.265 By MS/MS 2 0.94922 0.93261 16.719 2 Median 0.94922 0.93261 16.719 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39169000 18291000 20878000 39169000 18291000 20878000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38785 1899;3040 40730 205632;205633 209001 209001 1 YESQTSFGSMYPTR NPRVALRHMERCYAKYESQTSFGSMYPTRI KYESQTSFGSMYPTRIEGAKHTVSGSRCCA K Y E T R I 0 1 0 0 0 1 1 1 0 0 0 0 1 1 1 3 2 0 2 0 0 0 14 0 1652.7141 K7EQ21;Q9P0U4 K7EQ21 509 522 CXXC1 CXXC-type zinc finger protein 1 yes no 2 0.00059113 94.767 By MS/MS 1 0.73775 0.76725 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73775 0.76725 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5788500 3493100 2295400 0 0 0 0 0 0 5788500 3493100 2295400 0 0 0 0 0 0 0 0 0 38786 1395 40731 205634 209002 209002 0 YESSALPSGQLTSLSEYASR ATEQEVKEDIAKLLRYESSALPSGQLTSLS LPSGQLTSLSEYASRMRAGTRNIYYLCAPN R Y E S R M 2 1 0 0 0 1 2 1 0 0 3 0 0 0 1 6 1 0 2 0 0 0 20 0 2145.0226 I3L0K7;Q12931 Q12931 470 489 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2;3 1.8039E-18 127.71 By MS/MS By MS/MS By MS/MS By matching By matching 6 2 2 1 1 1.0523 0.99498 20.05 12 Median 0.96425 0.92134 8.5798 6 0 Median 1.1993 1.0383 1.8301 2 0 Median 1.1294 1.1636 17.638 2 0 Median 1.1205 0.96589 NaN 1 0 Median 1.5985 1.7049 NaN 1 0 Median NaN NaN NaN 0 0 Median 81483000 40043000 41440000 61145000 30717000 30428000 4396700 1896100 2500500 14203000 6902200 7301200 207260 100550 106710 1531000 427870 1103100 0 0 0 38787 2771;1269 40732 205635;205636;205637;205638;205639;205640;205641;205642;205643;205644;205645;205646 209003;209004;209005;209006;209007;209008;209009;209010;209011;209012 209007 9 YESSSYTDQFSR VEKQASRDLEQPTYRYESSSYTDQFSRNYE TYRYESSSYTDQFSRNYEHRLRYEDRVPMY R Y E S R N 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 4 1 0 2 0 0 0 12 0 1468.6107 A0A087X0K9;G5E9E7;G3V1L9;Q07157 A0A087X0K9 969 980 TJP1 Tight junction protein ZO-1 yes no 2 2.2056E-09 171.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.273 1.0993 13.647 6 Median NaN NaN NaN 0 0 Median 1.6211 1.3484 NaN 1 1 Median 0.91742 1.0076 NaN 1 0 Median 1.3665 1.1992 NaN 1 0 Median 0.93084 0.96747 NaN 1 0 Median 1.3227 1.0955 14.395 2 0 Median 17890000 8352800 9536800 0 0 0 1280000 407670 872290 6407200 3180100 3227100 1867800 817210 1050600 6426800 3187600 3239200 1907900 760160 1147700 38788 104 40733 205647;205648;205649;205650;205651;205652 209013;209014;209015;209016;209017;209018;209019;209020;209021 209013 9 YESWEDDQVPK IGALNPKRAAFFAERYESWEDDQVPKFHYG FAERYESWEDDQVPKFHYGTHYSTASFVLA R Y E P K F 0 0 0 2 0 1 2 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 11 0 1394.599 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6;A0A3B3IU76;A0A3B3IS13 E9PEM5 2277 2287 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.0002796 72.928 By matching By MS/MS 1 1 0.86059 0.80061 13.859 2 Median 0.73107 0.72587 NaN 1 0 Median 1.0131 0.88304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7567000 4291300 3275700 3899100 2412100 1486900 3667900 1879100 1788800 0 0 0 0 0 0 0 0 0 0 0 0 38789 470 40734 205653;205654 209022 209022 1 YETELAMR QIDNARLAADDFRVKYETELAMRQSVENDI ADDFRVKYETELAMRQSVENDIHGLRKVID K Y E M R Q 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 8 0 1011.4695 CON__P05784;P05783;F8VZY9 P05783 168 175 KRT18 Keratin, type I cytoskeletal 18 no no 2 4.7588E-13 148.33 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 2 4 1 6 1.2803 1.1702 11.962 15 Median 1.2192 1.1559 NaN 1 0 Median 1.5807 1.3531 19.883 2 0 Median 1.1849 1.1682 0.23855 2 0 Median 1.2795 1.1177 13.356 4 0 Median 1.2803 1.2724 NaN 1 1 Median 1.3266 1.0754 10.285 5 1 Median 235710000 102670000 133040000 17868000 8076100 9791500 30570000 11866000 18704000 64329000 28493000 35835000 56281000 25297000 30984000 34187000 14724000 19463000 32478000 14219000 18260000 + 38790 1869;749 40735;40736 205655;205656;205657;205658;205659;205660;205661;205662;205663;205664;205665;205666;205667;205668;205669;205670 209023;209024;209025;209026;209027;209028;209029;209030;209031;209032;209033;209034;209035;209036;209037;209038;209039;209040 209027 267 18 YETFISDVLQR PKRRAVEATGEKVLRYETFISDVLQRDLRK KVLRYETFISDVLQRDLRKVLDHRDKVYEQ R Y E Q R D 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 1 1 0 1 1 0 0 11 0 1369.6878 Q9UBK9;S4R2Z4 Q9UBK9 20 30 UXT Protein UXT yes no 2 0.0004849 68.735 By MS/MS By MS/MS By MS/MS 1 1 1 1.1382 1.0926 3.9789 3 Median 1.0764 1.0694 NaN 1 0 Median 1.3005 1.0926 NaN 1 0 Median 1.1382 1.1551 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5809000 2679400 3129600 4375000 2041500 2333500 368780 138290 230480 1065200 499650 565570 0 0 0 0 0 0 0 0 0 38791 4240 40737 205671;205672;205673 209041;209042;209043;209044;209045 209041 5 YETLVGTIGK ETVELDVSDEEMARRYETLVGTIGKKFARK EMARRYETLVGTIGKKFARKRDHANYEEDE R Y E G K K 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 2 0 1 1 0 0 10 0 1079.5863 H3BSB3;H3BNT4;Q99547 H3BSB3 89 98 MPHOSPH6 M-phase phosphoprotein 6 yes no 2 0.037233 31.934 By MS/MS 1 1.0873 1.0279 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0873 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4875400 2391600 2483800 0 0 0 0 0 0 4875400 2391600 2483800 0 0 0 0 0 0 0 0 0 38792 1215 40738 205674 209046 209046 1 YETLVGTIGKK ETVELDVSDEEMARRYETLVGTIGKKFARK MARRYETLVGTIGKKFARKRDHANYEEDEN R Y E K K F 0 0 0 0 0 0 1 2 0 1 1 2 0 0 0 0 2 0 1 1 0 0 11 1 1207.6812 H3BSB3;H3BNT4;Q99547 H3BSB3 89 99 MPHOSPH6 M-phase phosphoprotein 6 yes no 2 0.030413 67.563 By MS/MS 1 1.1212 1.1236 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1212 1.1236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3117100 1528300 1588800 0 0 0 0 0 0 3117100 1528300 1588800 0 0 0 0 0 0 0 0 0 38793 1215 40739 205675 209047 209047 0 YETSGIGEAR AMSYDLLPIENDVYKYETSGIGEARVKEVL NDVYKYETSGIGEARVKEVLLDEDDDLWIA K Y E A R V 1 1 0 0 0 0 2 2 0 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1081.504 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;A0A1B0GW76 A0A1B0GWF2 266 275 STXBP1 Syntaxin-binding protein 1 yes no 2 0.00036244 87.308 By MS/MS 1 1.225 1.0562 NaN 1 Median NaN NaN NaN 0 0 Median 1.225 1.0562 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1386400 635510 750910 0 0 0 1386400 635510 750910 0 0 0 0 0 0 0 0 0 0 0 0 38794 271 40740 205676 209048;209049 209049 2 YETSSTSAGDRYDSLLGR EGSNKKETQTDSISRYETSSTSAGDRYDSL SSTSAGDRYDSLLGRSGSYSYLEERKPYSS R Y E G R S 1 2 0 2 0 0 1 2 0 0 2 0 0 0 0 4 2 0 2 0 0 0 18 1 1976.9076 O14974;H0YIM2;H0YIS3 O14974 890 907 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes no 3 4.9176E-25 182.18 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.1405 1.1395 34.799 5 Median 1.1535 1.2816 NaN 1 0 Median 1.182 1.1395 NaN 1 0 Median 1.0119 1.2307 NaN 1 0 Median 1.1405 1.1166 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61085 0.55221 NaN 1 0 Median 42888000 21269000 21619000 12510000 5680200 6829600 1517300 478690 1038600 24340000 13005000 11335000 4267800 1968000 2299800 0 0 0 253050 137630 115420 38795 1508 40741 205677;205678;205679;205680;205681 209050;209051;209052 209052 3 YETVIMPVFGIATPFHIATIK KEPHIREMKIYIDKKYETVIMPVFGIATPF PVFGIATPFHIATIKNISMSVEGDYTYLRI K Y E I K N 2 0 0 0 0 0 1 1 1 4 0 1 1 2 2 0 3 0 1 2 0 0 21 0 2347.265 Q9Y5B9 Q9Y5B9 535 555 SUPT16H FACT complex subunit SPT16 yes yes 3 0.058539 7.6978 By matching By MS/MS 1 1 0.88824 0.9378 25.158 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0323 1.1204 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76431 0.78497 NaN 1 0 Median NaN NaN NaN 0 0 Median 881390 401720 479670 0 0 0 0 0 0 176570 93913 82660 0 0 0 704820 307810 397010 0 0 0 38796 4456 40742 205682;205683 209053 209053 1 YEVTEDVYTSR RYSRLSKKRENDKVKYEVTEDVYTSRKKQH DKVKYEVTEDVYTSRKKQHQTMMHYFCALN K Y E S R K 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 1 2 0 2 2 0 0 11 0 1360.6147 Q9UKG1 Q9UKG1 161 171 APPL1 DCC-interacting protein 13-alpha yes yes 2 0.0033754 73.067 By MS/MS 1 1.0511 1.0372 NaN 1 Median 1.0511 1.0372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2168500 871500 1297000 2168500 871500 1297000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38797 4310 40743 205684 209054 209054 1 YEWDVAEAR ARQELKQRARYLAEKYEWDVAEARKIWCFG RYLAEKYEWDVAEARKIWCFGPDGTGPNIL K Y E A R K 2 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1137.5091 P13639 P13639 639 647 EEF2 Elongation factor 2 yes yes 2 0.00011364 145.63 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 7 1 4 3 1.0881 1.0273 21.14 17 Plateau 1.1784 1.1234 5.8054 2 0 Median 0.96044 0.82522 20.082 7 1 Median 1.1493 1.2145 NaN 1 0 Median 0.93758 0.79778 12.274 4 0 Median NaN NaN NaN 0 0 Median 1.0323 0.88609 18.011 3 0 Plateau 294090000 139990000 154100000 72127000 33301000 38826000 172540000 83925000 88617000 34237000 15078000 19159000 12988000 6509400 6478200 0 0 0 2198600 1174400 1024200 38798 1992 40744 205685;205686;205687;205688;205689;205690;205691;205692;205693;205694;205695;205696;205697;205698;205699;205700;205701 209055;209056;209057;209058;209059;209060;209061;209062;209063;209064;209065;209066;209067;209068;209069;209070;209071 209058 17 YEYGIFNQK SMATLGLAAYGYGIRYEYGIFNQKIRDGWQ YGYGIRYEYGIFNQKIRDGWQVEEADDWLR R Y E Q K I 0 0 1 0 0 1 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1160.5502 P06737;E9PK47 P06737 162 170 PYGL Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase yes no 2 0.004416 60.76 By MS/MS By matching 2 1 1.116 1.0072 5.753 3 Median 1.0881 1.0484 5.6686 2 0 Median 1.116 0.97603 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21930000 10447000 11484000 17262000 8577700 8684600 4668200 1868900 2799300 0 0 0 0 0 0 0 0 0 0 0 0 38799 1874 40745 205702;205703;205704 209072;209073;209074 209072 3 YEYHWADGTNIK FCTEESCPVMSAGPKYEYHWADGTNIKKPI GPKYEYHWADGTNIKKPIKCSAPKYIDYLM K Y E I K K 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 2 0 0 0 12 0 1495.6732 Q7L9L4;Q9H8S9;D6RCK3 Q7L9L4 93 104 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A yes no 2;3 1.3546E-05 145.89 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 2 1 1 1.1455 1.0432 28.964 9 Median 1.1034 1.0242 5.8855 2 0 Median 1.2392 1.0432 NaN 1 0 Median 1.1394 1.0691 1.1759 2 0 Median 0.95161 0.78899 24.622 2 0 Median 1.9999 2.0414 NaN 1 0 Median 1.2378 1.0415 NaN 1 0 Median 94519000 45507000 49012000 53394000 26948000 26445000 4018200 1823900 2194300 20607000 8834300 11773000 12769000 6752100 6016900 2374100 511360 1862800 1356400 636510 719930 38800 3229 40746 205705;205706;205707;205708;205709;205710;205711;205712;205713 209075;209076;209077;209078;209079;209080;209081;209082;209083;209084;209085 209075 11 YEYQPFAGK KLRIWDTTQKEHLLKYEYQPFAGKIKDIAW KEHLLKYEYQPFAGKIKDIAWTEDSKRIAV K Y E G K I 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 0 2 0 0 0 9 0 1101.5131 O75083;D6RD66 O75083 96 104 WDR1 WD repeat-containing protein 1 yes no 2 0.006443 54.549 By MS/MS By MS/MS By matching 2 1 1 1.0701 0.97903 14.034 4 Median 1.037 0.99932 16.708 2 0 Median 1.012 0.84753 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2554 1.0794 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37467000 18758000 18709000 24810000 12638000 12172000 11839000 5795400 6043300 0 0 0 818300 324770 493530 0 0 0 0 0 0 38801 1643 40747 205714;205715;205716;205717 209086;209087;209088;209089;209090 209088 5 YFAATQFEPLAAR GFYGFSYTDESNEKKYFAATQFEPLAARSA KKYFAATQFEPLAARSAFPCFDEPAFKATF K Y F A R S 4 1 0 0 0 1 1 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 13 0 1483.746 Q9UIQ6 Q9UIQ6 288 300 LNPEP Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form yes yes 2 4.2058E-05 125.48 By MS/MS By matching 1 1 0.82116 0.73903 39.391 2 Median 0.59309 0.55937 NaN 1 0 Median 1.1369 0.97641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9092900 5438700 3654300 7234400 4573400 2661100 1858500 865290 993190 0 0 0 0 0 0 0 0 0 0 0 0 38802 4292 40748 205718;205719 209091;209092 209092 2 YFAQEALTVLSLA PILEKLTQDQDVDVKYFAQEALTVLSLA__ VKYFAQEALTVLSLA_______________ K Y F L A - 3 0 0 0 0 1 1 0 0 0 3 0 0 1 0 1 1 0 1 1 0 0 13 0 1424.7551 P30153;B3KQV6 P30153 577 589 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2 0.032502 44.203 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7604200 0 0 0 0 0 0 0 0 7604200 0 0 0 0 0 0 0 0 0 0 0 38803 2190 40749 205720 209093 209093 1 YFDEHYEYR ______________________________ IYYSDKYFDEHYEYRHVMLPRELSKQVPKT K Y F Y R H 0 1 0 1 0 0 2 0 1 0 0 0 0 1 0 0 0 0 3 0 0 0 9 0 1320.5411 P33552 P33552 12 20 CKS2 Cyclin-dependent kinases regulatory subunit 2 yes yes 3 0.0080741 36.424 By matching By MS/MS 1 1 1.2455 1.1531 37.724 2 Median NaN NaN NaN 0 0 Median 1.0434 0.88314 NaN 1 0 Median 1.4868 1.5056 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4996500 2045700 2950800 0 0 0 1754000 841730 912310 3242400 1204000 2038500 0 0 0 0 0 0 0 0 0 38804 2223 40750 205721;205722 209094 209094 1 YFDEISQDTGK LSNVKFIQEKKLIGRYFDEISQDTGKYCFG LIGRYFDEISQDTGKYCFGVEDTLKALEMG R Y F G K Y 0 0 0 2 0 1 1 1 0 1 0 1 0 1 0 1 1 0 1 0 0 0 11 0 1301.5776 B7Z7P8;P62495 B7Z7P8 276 286 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2 8.1233E-22 200.05 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.99961 0.89911 20.354 5 Median 0.83626 0.81268 28.448 2 0 Median 0.99106 0.8419 NaN 1 0 Median 1.1931 1.149 NaN 1 0 Median 0.99961 0.89911 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58165000 27650000 30516000 21192000 9749300 11443000 6862400 3480800 3381500 16993000 8079400 8913300 13118000 6340300 6777700 0 0 0 0 0 0 38805 638 40751 205723;205724;205725;205726;205727 209095;209096;209097;209098;209099;209100;209101 209101 7 YFDGNLEK LLSHFNWDKEKLMERYFDGNLEKLFAECHV KEKLMERYFDGNLEKLFAECHVINPSKKSR R Y F E K L 0 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 984.45526 Q9Y4X5 Q9Y4X5 149 156 ARIH1 E3 ubiquitin-protein ligase ARIH1 yes yes 2 0.042262 36.395 By matching By matching By MS/MS 1 1 1 1.0999 0.98898 11.819 3 Plateau 1.1218 1.081 NaN 1 0 Median 0.99027 0.85532 NaN 1 0 Median 0.96562 0.98898 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6347900 2852100 3495800 2609500 1185900 1423600 2102000 907750 1194300 1636400 758460 877920 0 0 0 0 0 0 0 0 0 38806 4450 40752 205728;205729;205730 209102 209102 1 YFDGSGGNNHAVEHYR LWLNLTDGSILCGRRYFDGSGGNNHAVEHY FDGSGGNNHAVEHYRETGYPLAVKLGTITP R Y F Y R E 1 1 2 1 0 0 1 3 2 0 0 0 0 1 0 1 0 0 2 1 0 0 16 0 1821.7819 P45974 P45974 223 238 USP5 Ubiquitin carboxyl-terminal hydrolase 5 yes yes 3;4 6.4852E-11 111.74 By MS/MS By MS/MS 3 4 1.1228 0.97043 9.2587 7 Median 1.126 1.0887 12.578 3 0 Plateau 1.1362 0.96939 8.0771 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28318000 13104000 15215000 9881600 5028100 4853400 18437000 8075400 10361000 0 0 0 0 0 0 0 0 0 0 0 0 38807 2332 40753 205731;205732;205733;205734;205735;205736;205737 209103;209104;209105;209106;209107;209108;209109;209110 209110 8 YFDLGLPNR IKEKLILPHVDIQLKYFDLGLPNRDQTDDQ VDIQLKYFDLGLPNRDQTDDQVTIDSALAT K Y F N R D 0 1 1 1 0 0 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1093.5556 P48735 P48735 81 89 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 0.00097881 87.323 By MS/MS By MS/MS By matching 1 1 1 0.91069 0.91493 25.195 3 Median 0.76358 0.74097 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91069 0.91493 NaN 1 0 Median 1.398 1.2238 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10730000 5734800 4995300 6874700 3725400 3149300 0 0 0 3514700 1874200 1640500 340740 135300 205440 0 0 0 0 0 0 38808 2367 40754 205738;205739;205740 209111;209112;209113;209114 209112 4 YFDPANGK AKKVEDMMKKLWGDRYFDPANGKFSKSATS KKLWGDRYFDPANGKFSKSATSPEGKKLPR R Y F G K F 1 0 1 1 0 0 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 8 0 910.41848 P13639 P13639 265 272 EEF2 Elongation factor 2 yes yes 2 0.0022895 110.61 By MS/MS By MS/MS By MS/MS By MS/MS 2 5 1 1 0.95314 0.81697 19.545 9 Median 1.0593 1.0319 7.3419 2 0 Median 0.86318 0.75538 11.816 5 0 Median 1.0736 1.137 NaN 1 0 Median 0.8944 0.77598 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42339000 22334000 20006000 7934000 3969900 3964000 30569000 16454000 14115000 1876400 902440 973910 1960300 1007800 952490 0 0 0 0 0 0 38809 1992 40755 205741;205742;205743;205744;205745;205746;205747;205748;205749 209115;209116;209117;209118;209119;209120;209121;209122;209123;209124;209125 209116 11 YFDRVDENNPEYLR VVTSPPPTTAPHKERYFDRVDENNPEYLRE RYFDRVDENNPEYLRERNMAPDLRQDFNMM R Y F L R E 0 2 2 2 0 0 2 0 0 0 1 0 0 1 1 0 0 0 2 1 0 0 14 1 1828.838 E7EV99;E7ENY0;P35611;A0A0A0MSR2;D6RF25;D6RJE2;D6RAH3 E7EV99 24 37 ADD1 Alpha-adducin yes no 2;3 3.6249E-43 228.12 By MS/MS By MS/MS By MS/MS By matching By matching 1 4 6 1 1 0.77732 0.83381 26.467 13 Median 0.77732 0.86363 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.5825 0.65153 30.227 4 1 Median 1.0316 0.96085 16.35 6 0 Median 0.76741 0.83381 NaN 1 0 Median 0.70918 0.64109 NaN 1 0 Median 139040000 80439000 58605000 10195000 4776800 5417700 0 0 0 105990000 64281000 41705000 14707000 7260700 7446100 7684500 3836000 3848500 472230 284020 188210 38810 866 40756 205750;205751;205752;205753;205754;205755;205756;205757;205758;205759;205760;205761;205762 209126;209127;209128;209129;209130 209128 5 YFDSGDYNMAK AEVPEAASAEEQKQKYFDSGDYNMAKAKMK QKQKYFDSGDYNMAKAKMKNKQLPTAAPDK K Y F A K A 1 0 1 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 2 0 0 0 11 0 1309.5285 H3BQ52;H3BTD3;H3BMD8;A6NMQ3;Q5T5H1;P56211;O43768 H3BQ52 18 28 ARPP19;ENSA cAMP-regulated phosphoprotein 19;Alpha-endosulfine yes no 2 0.0004849 68.735 By MS/MS By MS/MS By matching 1 1 1 1.3225 1.0821 12.367 3 Median 1.1261 1.062 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3612 1.3273 NaN 1 0 Median 1.3225 1.0821 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19893000 8553600 11339000 15453000 6421600 9031500 0 0 0 3712500 1776500 1935900 726990 355400 371590 0 0 0 0 0 0 38811 529 40757 205763;205764;205765 209131;209132;209133;209134 209133 4 YFEADPPGQVAASPDPTT VWDYEEGEVEALLDRYFEADPPGQVAASPD ADPPGQVAASPDPTT_______________ R Y F T T - 3 0 0 2 0 1 1 1 0 0 0 0 0 1 4 1 2 0 1 1 0 0 18 0 1861.837 H0Y8X4;O43598 H0Y8X4 226 243 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 yes no 2 3.6347E-15 114.24 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30738000 0 0 30738000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38812 1164 40758 205766 209135;209136 209136 2 YFEGVSPK YKLLSITVRNAKKIKYFEGVSPKSLKHSPE RNAKKIKYFEGVSPKSLKHSPEDPEKYSCF K Y F P K S 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 1 0 0 1 1 0 0 8 0 925.45453 P78527 P78527 682 689 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0023383 113.7 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 2 2 1 1.1046 0.98473 24.341 7 Median 0.62045 0.62026 NaN 1 0 Median 1.1046 0.98473 NaN 1 0 Median 0.7715 0.84114 8.3722 2 1 Median 1.3 1.2307 1.6106 2 1 Median NaN NaN NaN 0 0 Median 1.1626 0.99592 NaN 1 1 Median 73985000 37174000 36811000 7581800 3639500 3942200 24054000 11403000 12651000 28612000 16192000 12420000 7995100 3326700 4668400 0 0 0 5741400 2613000 3128400 38813 2647 40759 205767;205768;205769;205770;205771;205772;205773 209137;209138;209139;209140;209141 209139 5 YFEITDESPYVHYLNTFSSK TSIIYLCGKGDSSIRYFEITDESPYVHYLN DESPYVHYLNTFSSKEPQRGMGYMPKRGLD R Y F S K E 0 0 1 1 0 0 2 0 1 1 1 1 0 2 1 3 2 0 3 1 0 0 20 0 2439.1271 Q9ULV4;B4E3S0 Q9ULV4 292 311 CORO1C Coronin-1C;Coronin yes no 2;3 0.0019786 37.999 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 4 1 1 0.93658 0.89469 18.363 9 Median 1.1161 1.0683 21.78 2 0 Median 0.77464 0.66709 NaN 1 1 Median 0.77279 0.81047 11.265 4 0 Median 1.0032 0.89469 NaN 1 0 Median 0.99614 0.95482 NaN 1 0 Median NaN NaN NaN 0 0 Median 17764000 9034300 8730200 3245700 1369900 1875800 1769100 986180 782940 9566000 5202400 4363600 1242300 618460 623880 1941400 857400 1084000 0 0 0 38814 4329 40760 205774;205775;205776;205777;205778;205779;205780;205781;205782 209142;209143;209144;209145;209146;209147;209148;209149;209150;209151;209152;209153 209146 12 YFEITEEPPYIHFLNTFTSK TSVVYVCGKGDSSIRYFEITEEPPYIHFLN EEPPYIHFLNTFTSKEPQRGMGSMPKRGLE R Y F S K E 0 0 1 0 0 0 3 0 1 2 1 1 0 3 2 1 3 0 2 0 0 0 20 0 2475.1998 Q9BR76 Q9BR76 294 313 CORO1B Coronin-1B yes yes 3 0.055512 8.4943 By MS/MS 1 0.65617 0.66061 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65617 0.66061 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 852900 421400 431510 0 0 0 0 0 0 852900 421400 431510 0 0 0 0 0 0 0 0 0 38815 3792 40761 205783 209154;209155 209154 2 YFELEPLAR HQDKPAARSVQEIKKYFELEPLARGKRWIL VQEIKKYFELEPLARGKRWILQPCSLDDMD K Y F A R G 1 1 0 0 0 0 2 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1136.5866 Q9NXU5;A0A087WUW9 Q9NXU5 158 166 ARL15 ADP-ribosylation factor-like protein 15 yes no 2 0.017009 42.109 By MS/MS By matching 1 1 1.1133 1.0341 21.208 2 Median 0.94368 0.89013 NaN 1 0 Median 1.3133 1.2015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2296900 1151700 1145200 2176300 1079500 1096800 120600 72149 48455 0 0 0 0 0 0 0 0 0 0 0 0 38816 36 40762 205784;205785 209156 209156 1 YFEVFGEIEEAVVITDR VGGLPYHTTDASLRKYFEVFGEIEEAVVIT EVFGEIEEAVVITDRQTGKSRGYGFVTMAD K Y F D R Q 1 1 0 1 0 0 4 1 0 2 0 0 0 2 0 0 1 0 1 3 0 0 17 0 2014.9888 Q9BX46 Q9BX46 30 46 RBM24 RNA-binding protein 24 yes yes 3 0.053082 10.165 By MS/MS 2 1.1515 0.99742 9.1181 2 Median NaN NaN NaN 0 0 Median 1.1515 0.99742 9.1181 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13029000 5708100 7321200 0 0 0 13029000 5708100 7321200 0 0 0 0 0 0 0 0 0 0 0 0 38817 3876 40763 205786;205787 209157 209157 1 YFFFDDGNGLK RGDNPKLLLKDMKTKYFFFDDGNGLKGNRN MKTKYFFFDDGNGLKGNRNVTLTLSWNVVP K Y F L K G 0 0 1 2 0 0 0 2 0 0 1 1 0 3 0 0 0 0 1 0 0 0 11 0 1321.5979 P61009 P61009 127 137 SPCS3 Signal peptidase complex subunit 3 yes yes 2 0.0018837 56.563 By MS/MS By matching By matching 2 1 1 1.1921 1.0679 3.7429 4 Median 1.176 1.1004 4.4949 2 0 Median 1.2099 1.0401 NaN 1 0 Median 1.1797 1.0699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6327400 2758000 3569300 5794200 2514200 3280000 314650 146600 168050 218490 97224 121270 0 0 0 0 0 0 0 0 0 38818 2536 40764 205788;205789;205790;205791 209158;209159 209159 2 YFFGEGYTYGAQLQK LYNEHTVDRAPLRNKYFFGEGYTYGAQLQK YFFGEGYTYGAQLQKRGPGQERLYPPGDVD K Y F Q K R 1 0 0 0 0 2 1 3 0 0 1 1 0 2 0 0 1 0 3 0 0 0 15 0 1770.8253 Q6P6C2 Q6P6C2 133 147 ALKBH5 RNA demethylase ALKBH5 yes yes 2 0.00044858 49.5 By MS/MS By matching 1 1 1.1274 1.0504 2.4222 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0977 1.0685 NaN 1 0 Median 1.1578 1.0325 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9261000 4541600 4719400 0 0 0 0 0 0 8011500 3906300 4105200 1249500 635370 614160 0 0 0 0 0 0 38819 3163 40765 205792;205793 209160;209161 209160 2 YFFTSVSRPGR ALALTQTWAGSHSMRYFFTSVSRPGRGEPR HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQ R Y F G R G 0 2 0 0 0 0 0 1 0 0 0 0 0 2 1 2 1 0 1 1 0 0 11 1 1315.6673 P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36 P04439 31 41 HLA-A HLA class I histocompatibility antigen, A-3 alpha chain no no 2 0.0014112 72.547 By MS/MS By matching 1 1 0.85901 0.85151 6.8114 2 Median 0.84921 0.89352 NaN 1 0 Median 0.86892 0.81147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15887000 8586300 7300300 12755000 7195800 5559200 3131500 1390500 1741100 0 0 0 0 0 0 0 0 0 0 0 0 38820 348 40766 205794;205795 209162 209162 1 YFGDFEKR KNEDKLNHHQRIGLKYFGDFEKRIPREEML HQRIGLKYFGDFEKRIPREEMLQMQDIVLN K Y F K R I 0 1 0 1 0 0 1 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 8 1 1060.4978 P06746;E7EW18;H0YBJ0;E5RIJ0;E9PIC6 P06746 142 149 POLB DNA polymerase beta yes no 2 0.063498 35.88 By MS/MS 1 2.0404 1.7994 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.0404 1.7994 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 532060 173060 359000 0 0 0 0 0 0 0 0 0 532060 173060 359000 0 0 0 0 0 0 38821 1876 40767 205796 209163 209163 1 YFGDIISVGQR FFCCDMQERFRPAIKYFGDIISVGQRLLQG PAIKYFGDIISVGQRLLQGARILGIPVIVT K Y F Q R L 0 1 0 1 0 1 0 2 0 2 0 0 0 1 0 1 0 0 1 1 0 0 11 0 1253.6404 Q96CN7;D6RGE2 Q96CN7 132 142 ISOC1 Isochorismatase domain-containing protein 1 yes no 2 0.00018859 94.692 By MS/MS By MS/MS By MS/MS By matching By matching 2 5 2 2 1 1.2219 1.0614 16.431 12 Median 1.1338 1.0621 10.298 2 0 Median 1.2236 1.0288 13.055 5 0 Median 0.97184 1.0386 25.606 2 0 Median 1.254 1.0944 1.6406 2 0 Median 1.5101 1.5711 NaN 1 0 Median NaN NaN NaN 0 0 Median 81292000 36840000 44451000 47246000 21618000 25628000 17564000 8033700 9529800 9266500 4415800 4850700 1022300 384690 637650 6192900 2387700 3805200 0 0 0 38822 3619 40768 205797;205798;205799;205800;205801;205802;205803;205804;205805;205806;205807;205808 209164;209165;209166;209167;209168;209169 209166 6 YFGGTEDR HDDGRWSLQSEAHRRYFGGTEDRLSCFAQT QSEAHRRYFGGTEDRLSCFAQTVSPAEKWS R Y F D R L 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 1 0 0 0 8 0 943.40356 Q16658 Q16658 111 118 FSCN1 Fascin yes yes 2 0.0052175 77.058 By MS/MS By MS/MS By MS/MS 2 2 1 1.0724 0.97445 10.455 5 Median 0.96141 0.95599 18.463 2 0 Median 1.1151 0.95432 2.9524 2 0 Median 1.005 1.0605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25238000 11361000 13878000 6892700 3294600 3598100 17132000 7448100 9684100 1213600 618090 595470 0 0 0 0 0 0 0 0 0 38823 2993 40769 205809;205810;205811;205812;205813 209170;209171;209172;209173;209174;209175 209174 6 YFGPNLLNTVK FYHISLEHEILLHPRYFGPNLLNTVKQKLF LHPRYFGPNLLNTVKQKLFTEVEGTCTGKY R Y F V K Q 0 0 2 0 0 0 0 1 0 0 2 1 0 1 1 0 1 0 1 1 0 0 11 0 1264.6816 P62487;E9PIU7;E9PKH3;H0YEE4 P62487 17 27 POLR2G DNA-directed RNA polymerase II subunit RPB7 yes no 2 0.0058304 45.368 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 0.83486 0.80516 23.529 6 Median 0.87786 0.82885 NaN 1 0 Median 0.83907 0.72557 29.241 2 0 Median NaN NaN NaN 0 0 Median 1.2419 1.1228 NaN 1 0 Median 0.70351 0.78214 NaN 1 0 Median 0.79396 0.63051 NaN 1 0 Median 27756000 15186000 12569000 11326000 5912300 5413800 1376100 699510 676550 0 0 0 316110 90290 225820 12371000 7196600 5174700 2366400 1287800 1078600 38824 2590 40770 205814;205815;205816;205817;205818;205819 209176 209176 1 YFGVLQR HSLMAAERVKAWTSRYFGVLQRSLYVACTA RVKAWTSRYFGVLQRSLYVACTALALQLVM R Y F Q R S 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 881.47594 Q8IXM6;H0Y6T6 Q8IXM6 92 98 NRM Nurim yes no 2 0.056278 50.12 By MS/MS 1 0.97903 0.94072 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97903 0.94072 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9989600 5040900 4948600 0 0 0 0 0 0 9989600 5040900 4948600 0 0 0 0 0 0 0 0 0 38825 3335 40771 205820 209177 209177 1 YFHPPAHLQAK CMDYIKGRCSREKCKYFHPPAHLQAKIKAA EKCKYFHPPAHLQAKIKAAQYQVNQAAAAQ K Y F A K I 2 0 0 0 0 1 0 0 2 0 1 1 0 1 2 0 0 0 1 0 0 0 11 0 1307.6775 C9JP00;A0A0A0MQX8;Q9NR56;Q86VM6;H7C4T5;C9JCX1;H7C4Y1;O95205;Q5VZF2 C9JP00 236 246 MBNL1;MBLL;MBNL2 Muscleblind-like protein 1;Muscleblind-like protein 2 yes no 3 0.00014516 67.704 By matching By MS/MS By MS/MS By matching 2 3 2 1 0.81174 0.82666 36.887 7 Median 0.86783 0.86005 82.362 2 0 Median NaN NaN NaN 0 0 Median 0.80466 0.82666 19.922 3 1 Median 0.81174 0.68773 NaN 1 0 Median 0.82332 0.87556 NaN 1 0 Median NaN NaN NaN 0 0 Median 40969000 23024000 17945000 3582600 2102200 1480300 0 0 0 30170000 17101000 13069000 3432400 1962000 1470400 3783200 1858300 1924900 0 0 0 38826 150 40772 205821;205822;205823;205824;205825;205826;205827;205828 209178;209179;209180;209181;209182;209183;209184 209179 7 YFHVVIAGPQDSPFEGGTFK PVPGIKAEPDESNARYFHVVIAGPQDSPFE IAGPQDSPFEGGTFKLELFLPEEYPMAAPK R Y F F K L 1 0 0 1 0 1 1 3 1 1 0 1 0 3 2 1 1 0 1 2 0 0 20 0 2195.0688 P61088;F8VSD4;F8VV71;F8VZ29 P61088 34 53 UBE2N Ubiquitin-conjugating enzyme E2 N yes no 3 7.9476E-05 52.298 By MS/MS By MS/MS By matching 1 1 2 0.90357 0.74988 55.482 4 Median NaN NaN NaN 0 0 Median 0.88764 0.77132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.9192 2.1735 NaN 1 1 Median 0.866 0.69738 6.2805 2 0 Median 6442300 2856400 3585800 0 0 0 1206300 599890 606400 0 0 0 0 0 0 3681900 1416400 2265500 1554100 840140 713960 38827 2544 40773 205829;205830;205831;205832 209185;209186;209187 209185 3 YFIHYSGWNK EAKCVKVAIKDKQVKYFIHYSGWNKNWDEW DKQVKYFIHYSGWNKNWDEWVPESRVLKYV K Y F N K N 0 0 1 0 0 0 0 1 1 1 0 1 0 1 0 1 0 1 2 0 0 0 10 0 1313.6193 B3KTM8;H0YLJ3;Q9UBU8;H0YMJ0;H0YNE0 B3KTM8 67 76 MORF4L1 Mortality factor 4-like protein 1 yes no 2;3 0.0067873 42.599 By MS/MS By MS/MS 3 1 1.0602 1.0733 6.429 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0765 1.1122 7.7909 3 1 Plateau 1.2608 1.0678 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37213000 17715000 19498000 0 0 0 0 0 0 34046000 16287000 17759000 3166700 1428300 1738300 0 0 0 0 0 0 38828 585 40774 205833;205834;205835;205836 209188;209189;209190;209191 209189 4 YFIRDEFLR ATPEPGEDPRVTRAKYFIRDEFLRISTASG RVTRAKYFIRDEFLRISTASGDGRHYCYPH K Y F L R I 0 2 0 1 0 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 9 1 1257.6506 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJY2;A0A0A0MR13 Q5JWF2 982 990 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 3 0.0010291 66.621 By MS/MS By matching By MS/MS By matching By MS/MS 2 1 2 1 2 1.2753 1.2972 19.234 8 Median 0.99667 1.0274 29.99 2 0 Median 1.6401 1.5317 NaN 1 0 Median 1.3334 1.4047 9.1099 2 0 Median 1.3796 1.2145 NaN 1 0 Median 1.269 1.3503 7.8198 2 0 Median NaN NaN NaN 0 0 Median 19533000 8339900 11193000 6855100 2992300 3862800 111930 39711 72222 8515700 3544800 4970800 203600 70764 132840 3846900 1692300 2154600 0 0 0 38829 2616 40775 205837;205838;205839;205840;205841;205842;205843;205844 209192;209193;209194;209195;209196 209192 5 YFKDTSPVFQR KLIGNHPDVLPFALRYFKDTSPVFQRLFLE FALRYFKDTSPVFQRLFLESSDANPVRYGR R Y F Q R L 0 1 0 1 0 1 0 0 0 0 0 1 0 2 1 1 1 0 1 1 0 0 11 1 1386.6932 Q9NU22;Q5T795 Q9NU22 115 125 MDN1 Midasin yes no 2;3 6.3397E-05 96.113 By MS/MS 2 0.85829 0.99463 11.084 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85829 0.99463 11.084 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17499000 10158000 7341000 0 0 0 0 0 0 17499000 10158000 7341000 0 0 0 0 0 0 0 0 0 38830 4112 40776 205845;205846 209197;209198;209199 209197 3 YFLASLDR GALHFRLGNLGEAKKYFLASLDRAKAEAEH NLGEAKKYFLASLDRAKAEAEHDEHYYNAI K Y F D R A 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 0 8 0 983.50763 Q6PD62 Q6PD62 473 480 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 2 0.030308 68.915 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38831 3168 40777 205847 209200 209200 1 YFLHQSHEER YYFDRDDVALKNFAKYFLHQSHEEREHAEK KNFAKYFLHQSHEEREHAEKLMKLQNQRGG K Y F E R E 0 1 0 0 0 1 2 0 2 0 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1344.6211 P02794;G3V192;E9PRK8;E9PKY7 P02794 55 64 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 2;3 0.00094689 66.692 By MS/MS By MS/MS By matching 4 5 1 1.1723 1.0723 58.905 10 Median 2.1941 2.093 25.037 4 0 Linear 0.67631 0.56111 33.629 5 0 Median 1.9831 1.8524 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12188000 6287200 5900400 2607500 1123100 1484400 8887000 4965600 3921400 693010 198460 494550 0 0 0 0 0 0 0 0 0 38832 1838 40778 205848;205849;205850;205851;205852;205853;205854;205855;205856;205857 209201;209202;209203;209204;209205;209206 209204 6 YFLHQSHEEREHAEK YYFDRDDVALKNFAKYFLHQSHEEREHAEK YFLHQSHEEREHAEKLMKLQNQRGGRIFLQ K Y F E K L 1 1 0 0 0 1 4 0 3 0 1 1 0 1 0 1 0 0 1 0 0 0 15 1 1938.8973 P02794;G3V192;E9PRK8;E9PKY7 P02794 55 69 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed;Ferritin yes no 3 0.060726 11.915 By MS/MS 2 0.63153 0.57735 15.011 2 Median NaN NaN NaN 0 0 Median 0.63153 0.57735 15.011 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 990890 618300 372590 0 0 0 990890 618300 372590 0 0 0 0 0 0 0 0 0 0 0 0 38833 1838 40779 205858;205859 209207 209207 1 YFLQATHVQPDDIGAHMNVGR GHALENEKNFERALKYFLQATHVQPDDIGA HVQPDDIGAHMNVGRTYKNLNRTKEAEESY K Y F G R T 2 1 1 2 0 2 0 2 2 1 1 0 1 1 1 0 1 0 1 2 0 0 21 0 2368.1382 Q6ZXV5 Q6ZXV5 468 488 TMTC3 Transmembrane and TPR repeat-containing protein 3 yes yes 4 0.0051855 23.658 By MS/MS 2 0.75377 0.74611 27.963 2 Median 0.75377 0.74611 27.963 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10212000 5115800 5096500 10212000 5115800 5096500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38834 3204 40780 205860;205861 209208 209208 1 YFLQGMGYIPSASMTR LPQVVQPGKLTEAFKYFLQGMGYIPSASMT FLQGMGYIPSASMTRLARSRTHSTSSSLGS K Y F T R L 1 1 0 0 0 1 0 2 0 1 1 0 2 1 1 2 1 0 2 0 0 0 16 0 1820.859 Q9UGV2;F8WBF9 Q9UGV2 308 323 NDRG3 Protein NDRG3 yes no 2 4.8528E-05 79.82 By MS/MS 2 0.7744 0.76567 25.686 2 Median 0.7744 0.76567 25.686 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9394000 6202000 3192000 9394000 6202000 3192000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38835 4267 40781 205862;205863 209209 209209 1 YFLVGAGAIGCELLK AVFGSDLQEKLGKQKYFLVGAGAIGCELLK YFLVGAGAIGCELLKNFAMIGLGCGEGGEI K Y F L K N 2 0 0 0 1 0 1 3 0 1 3 1 0 1 0 0 0 0 1 1 0 0 15 0 1609.8538 P22314 P22314 471 485 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.0012693 41.283 By MS/MS By matching 2 1 1.3824 1.2772 23.124 3 Median NaN NaN NaN 0 0 Median 1.2043 1.0603 26.313 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3824 1.345 NaN 1 0 Median NaN NaN NaN 0 0 Median 2939900 1369600 1570300 0 0 0 2805300 1291500 1513800 0 0 0 0 0 0 134650 78160 56493 0 0 0 38836 2100 40782 205864;205865;205866 209210 209210 1 YFLWVVK NDVQHFKVLRDGAGKYFLWVVKFNSLNELV VLRDGAGKYFLWVVKFNSLNELVDYHRSTS K Y F V K F 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 2 0 0 7 0 953.53747 P62993 P62993 118 124 GRB2 Growth factor receptor-bound protein 2 yes yes 2 0.055417 38.371 By MS/MS By matching By matching 2 2 1 1.2044 1.131 12.46 5 Median 1.1947 1.1204 0.99731 2 0 Median NaN NaN NaN 0 0 Median 1.2586 1.2236 11.126 2 0 Median NaN NaN NaN 0 0 Median 1.436 1.4717 NaN 1 0 Median NaN NaN NaN 0 0 Median 21562000 9758600 11803000 11320000 5177200 6142700 0 0 0 8705800 3948300 4757500 0 0 0 1536100 633080 903050 0 0 0 38837 2613 40783 205867;205868;205869;205870;205871 209211 209211 1 YFNEMSAQGLRPR QLSESESSLEMDDERYFNEMSAQGLRPRTV ERYFNEMSAQGLRPRTVSSPIPYTPSPSSS R Y F P R T 1 2 1 0 0 1 1 1 0 0 1 0 1 1 1 1 0 0 1 0 0 0 13 1 1567.7565 Q16204 Q16204 336 348 CCDC6 Coiled-coil domain-containing protein 6 yes yes 3 0.0013512 41.401 By MS/MS By MS/MS 1 1 0.83736 0.79209 1.6445 2 Median 0.79467 0.78293 NaN 1 0 Median 0.88235 0.80135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8001300 4105000 3896300 4723200 2508700 2214500 3278100 1596300 1681800 0 0 0 0 0 0 0 0 0 0 0 0 38838 2980 40784 205872;205873 209212;209213 209212 2 YFNSYTLTGR GPESDAQYQFTGIKKYFNSYTLTGRMNCVL TGIKKYFNSYTLTGRMNCVLATYGSIALIV K Y F G R M 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 2 0 0 0 10 0 1220.5826 Q96IX5 Q96IX5 18 27 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 6.08E-07 157.91 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 2 1 1.3306 1.1255 13.095 9 Median 1.334 1.2947 30.413 2 0 Median 1.3306 1.1369 3.2933 3 0 Plateau 1.1259 1.1255 NaN 1 0 Median 1.5261 1.1543 9.8748 2 0 Median 1.183 1.2152 NaN 1 0 Median NaN NaN NaN 0 0 Median 263960000 119250000 144710000 149930000 70814000 79120000 90504000 37722000 52782000 12275000 5571100 6704200 1118500 483530 634940 10125000 4659100 5466400 0 0 0 38839 3680 40785 205874;205875;205876;205877;205878;205879;205880;205881;205882 209214;209215;209216;209217;209218;209219;209220;209221;209222;209223;209224;209225;209226;209227;209228;209229;209230;209231 209226 18 YFPEYAEK IVSLPECFNSPYGAKYFPEYAEKIPGESTQ NSPYGAKYFPEYAEKIPGESTQKLSEVAKE K Y F E K I 1 0 0 0 0 0 2 0 0 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 1045.4757 Q9NQR4;H7C579;F8WF70 Q9NQR4 53 60 NIT2 Omega-amidase NIT2 yes no 2 0.067199 31.074 By MS/MS 1 0.73156 0.69714 NaN 1 Median 0.73156 0.69714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5247100 3332100 1915000 5247100 3332100 1915000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38840 4064 40786 205883 209232 209232 1 YFPFMDLK YVRVLDLHKKPFLAKYFPFMDLKLRAASPI KKPFLAKYFPFMDLKLRAASPIITLVALDE K Y F L K L 0 0 0 1 0 0 0 0 0 0 1 1 1 2 1 0 0 0 1 0 0 0 8 0 1059.5099 Q8TEM1 Q8TEM1 1013 1020 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.01337 53.166 By matching By MS/MS By matching 1 2 1 0.8883 0.88256 14.044 4 Median NaN NaN NaN 0 0 Median 0.99681 0.88405 NaN 1 0 Median 0.78673 0.86338 2.87 2 0 Median 1.2709 1.1491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6432900 3642500 2790400 0 0 0 512750 289250 223500 5793500 3290800 2502700 126690 62516 64173 0 0 0 0 0 0 38841 3477 40787 205884;205885;205886;205887 209233;209234;209235;209236;209237 209233 5 YFPTQALNFAFK GVLSFWRGNLANVIRYFPTQALNFAFKDKY VIRYFPTQALNFAFKDKYKQIFLGGVDKHT R Y F F K D 2 0 1 0 0 1 0 0 0 0 1 1 0 3 1 0 1 0 1 0 0 0 12 0 1445.7343 P05141;Q9H0C2;P12235;V9GYG0;P12236 P12236 81 92 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 3.6272E-06 131.06 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 10 11 2 2 2 6 1.1837 1.0273 35.926 33 Median 0.9869 0.92635 10.28 10 0 Median 1.2681 1.1123 55.077 11 1 Median 1.1381 1.1579 13.966 2 1 Median 1.4473 1.1984 7.0918 2 0 Median 1.1575 1.1943 6.6333 2 0 Median 1.1841 0.9821 34.635 6 0 Median 909680000 428010000 481670000 535900000 262160000 273740000 319360000 141840000 177510000 26021000 11640000 14381000 2574600 1038700 1535900 16395000 7148500 9246800 9431000 4180700 5250300 38842 1977;1861;1976 40788 205888;205889;205890;205891;205892;205893;205894;205895;205896;205897;205898;205899;205900;205901;205902;205903;205904;205905;205906;205907;205908;205909;205910;205911;205912;205913;205914;205915;205916;205917;205918;205919;205920 209238;209239;209240;209241;209242;209243;209244;209245;209246;209247;209248;209249;209250;209251;209252;209253;209254;209255;209256;209257;209258;209259;209260;209261;209262;209263;209264;209265;209266;209267;209268;209269;209270 209241 33 YFPTQALNFAFKDK GVLSFWRGNLANVIRYFPTQALNFAFKDKY RYFPTQALNFAFKDKYKQIFLGGVDKHTQF R Y F D K Y 2 0 1 1 0 1 0 0 0 0 1 2 0 3 1 0 1 0 1 0 0 0 14 1 1688.8562 P05141;Q9H0C2;P12235;V9GYG0;P12236 P12236 81 94 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2;3 1.5087E-07 110.66 By MS/MS By matching By matching 5 2 1 1.049 1.0502 13.4 8 Median 0.99413 1.0338 11.357 5 0 Median 1.2974 1.2122 13.567 2 0 Median NaN NaN NaN 0 0 Median 1.2705 1.0486 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74434000 35663000 38772000 71423000 34344000 37080000 2785900 1241400 1544400 0 0 0 225180 77795 147390 0 0 0 0 0 0 38843 1977;1861;1976 40789 205921;205922;205923;205924;205925;205926;205927;205928 209271;209272;209273;209274;209275;209276;209277 209273 7 YFQFQEEGK AGMLKRNCFASVFEKYFQFQEEGKEGENRA ASVFEKYFQFQEEGKEGENRAVIHYRDDET K Y F G K E 0 0 0 0 0 2 2 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 9 0 1174.5295 O15144 O15144 128 136 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2 0.00021561 141.39 By MS/MS By matching By matching By MS/MS 2 2 2 1 1.2094 1.1005 23.281 7 Median 0.82478 0.77112 27.06 2 0 Median 1.2711 1.09 1.3439 2 0 Median 1.1953 1.1624 0.18991 2 0 Median 1.5317 1.2839 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56175000 25723000 30452000 16397000 8533900 7863100 11958000 4932700 7024800 17611000 8433000 9178400 10209000 3823000 6386000 0 0 0 0 0 0 38844 1526 40790 205929;205930;205931;205932;205933;205934;205935 209278;209279;209280 209279 3 YFQFQEEGKEGENR AGMLKRNCFASVFEKYFQFQEEGKEGENRA KYFQFQEEGKEGENRAVIHYRDDETMYVES K Y F N R A 0 1 1 0 0 2 4 2 0 0 0 1 0 2 0 0 0 0 1 0 0 0 14 1 1759.7802 O15144 O15144 128 141 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2;3 9.8584E-09 106.32 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1.1601 1.1352 21.028 8 Median 0.81385 0.8136 34.369 2 0 Median 1.2614 1.1352 4.5182 2 0 Median 1.0059 1.0925 13.584 2 0 Median 1.2462 1.1761 0.49124 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54778000 25865000 28914000 13618000 6631500 6986800 10409000 4372900 6035700 24362000 12096000 12266000 6389600 2764700 3624900 0 0 0 0 0 0 38845 1526 40791 205936;205937;205938;205939;205940;205941;205942;205943 209281;209282;209283;209284;209285;209286;209287;209288;209289;209290;209291 209284 11 YFQIGTIVDNPADFYHSR PKRFYKKNDRDGFPKYFQIGTIVDNPADFY IGTIVDNPADFYHSRIPKKQRKRTIVEELL K Y F S R I 1 1 1 2 0 1 0 1 1 2 0 0 0 2 1 1 1 0 2 1 0 0 18 0 2142.0171 Q5QJE6 Q5QJE6 687 704 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 1.6765E-06 60.768 By MS/MS By matching 3 1 1.0591 1.0898 32.898 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1604 1.2193 26.012 3 0 Median 0.95798 0.755 NaN 1 0 Median 6138100 2374800 3763400 0 0 0 0 0 0 0 0 0 0 0 0 6025300 2321200 3704100 112860 53592 59266 38846 3067 40792 205944;205945;205946;205947 209292;209293 209292 2 YFSEADK GSLDAMDKHLSSQNRYFSEADKIKVAQGVS KHLSSQNRYFSEADKIKVAQGVSGAVQDKG R Y F D K I 1 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 7 0 858.37595 P12268;H0Y4R1 P12268 430 436 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.016334 68.915 By MS/MS 1 1.4371 1.2338 NaN 1 Median NaN NaN NaN 0 0 Median 1.4371 1.2338 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2176500 895190 1281300 0 0 0 2176500 895190 1281300 0 0 0 0 0 0 0 0 0 0 0 0 38847 1148 40793 205948 209294;209295 209294 2 YFSEADKIK GSLDAMDKHLSSQNRYFSEADKIKVAQGVS LSSQNRYFSEADKIKVAQGVSGAVQDKGSI R Y F I K V 1 0 0 1 0 0 1 0 0 1 0 2 0 1 0 1 0 0 1 0 0 0 9 1 1099.555 P12268;H0Y4R1 P12268 430 438 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes no 2 0.0069009 81.296 By MS/MS 1 1.0319 0.98601 NaN 1 Median 1.0319 0.98601 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10923000 5315000 5608300 10923000 5315000 5608300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38848 1148 40794 205949 209296;209297 209297 2 YFSERGDAVTK SLHTKLEGFHTQISKYFSERGDAVTKAAKQ QISKYFSERGDAVTKAAKQPHVGDYRQLVH K Y F T K A 1 1 0 1 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 1 0 0 11 1 1271.6146 Q06323;H0YLU2;H0YKK6 Q06323 177 187 PSME1 Proteasome activator complex subunit 1 yes no 2 0.042944 39.305 By MS/MS 1 0.68861 0.68246 NaN 1 Median 0.68861 0.68246 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2032700 1409500 623230 2032700 1409500 623230 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38849 2724 40795 205950 209298 209298 1 YFSGPAITLENTR SFSVFAEDDVKVVEKYFSGPAITLENTRVV EKYFSGPAITLENTRVVSQSLQHYLELGRQ K Y F T R V 1 1 1 0 0 0 1 1 0 1 1 0 0 1 1 1 2 0 1 0 0 0 13 0 1467.7358 O95155;K7EP75 O95155 611 623 UBE4B Ubiquitin conjugation factor E4 B yes no 2 0.001818 68.069 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38850 1748 40796 205951 209299 209299 1 YFSLKPEEKDEK KAPAPKPELIAAEKKYFSLKPEEKDEKSTL EKKYFSLKPEEKDEKSTLEQKPSKPAAPQV K Y F E K S 0 0 0 1 0 0 3 0 0 0 1 3 0 1 1 1 0 0 1 0 0 0 12 2 1511.7508 Q9Y5K6 Q9Y5K6 361 372 CD2AP CD2-associated protein yes yes 3 0.07312 12.767 By MS/MS By matching 1 1 0.82339 0.87513 12.578 2 Median 0.81944 0.80066 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82736 0.95653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4556700 2793600 1763100 1407100 939670 467440 0 0 0 3149600 1853900 1295700 0 0 0 0 0 0 0 0 0 38851 4460 40797 205952;205953 209300 209300 1 YFSLPFCVGSK MNTVGPYHNRQETYKYFSLPFCVGSKKSIS ETYKYFSLPFCVGSKKSISHYHETLGEALQ K Y F S K K 0 0 0 0 1 0 0 1 0 0 1 1 0 2 1 2 0 0 1 1 0 0 11 0 1303.6271 Q9HD45;Q5TB53 Q9HD45 60 70 TM9SF3 Transmembrane 9 superfamily member 3 yes no 2 0.0019387 56.258 By MS/MS 2 1.327 1.1641 6.8219 2 Median NaN NaN NaN 0 0 Median 1.327 1.1641 6.8219 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4996000 2205100 2790900 0 0 0 4996000 2205100 2790900 0 0 0 0 0 0 0 0 0 0 0 0 38852 4037 40798 205954;205955 209301 209301 1 YFSSENMDGSNPALNVLQR IKGWIKEQAHKFVERYFSSENMDGSNPALN ENMDGSNPALNVLQRLCAATEQLNLQVDGG R Y F Q R L 1 1 3 1 0 1 1 1 0 0 2 0 1 1 1 3 0 0 1 1 0 0 19 0 2140.9848 Q14669 Q14669 1104 1122 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 6.7478E-18 127.37 By matching By MS/MS By matching 1 1 1 0.979 1.0715 12.502 3 Plateau NaN NaN NaN 0 0 Median 1.0353 0.91741 NaN 1 0 Median 0.979 1.0715 NaN 1 0 Median 0.96497 0.83665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9181700 4711600 4470100 0 0 0 377160 185110 192050 8643300 4442200 4201100 161210 84265 76943 0 0 0 0 0 0 38853 2886 40799 205956;205957;205958 209302;209303 209302 2 YFSSMAEFLK NPQAAEKKVAEANQKYFSSMAEFLKVKGEK EANQKYFSSMAEFLKVKGEKSGLMST____ K Y F L K V 1 0 0 0 0 0 1 0 0 0 1 1 1 2 0 2 0 0 1 0 0 0 10 0 1221.574 Q8WWY3;E7EVX8 Q8WWY3 479 488 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes no 2 0.04171 30.57 By matching By matching By matching By MS/MS By matching 1 1 1 1 1 1.2051 1.0606 4.5857 5 Median 1.0579 1.0127 NaN 1 0 Median 1.207 1.0694 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2051 1.0437 NaN 1 0 Median 1.1073 1.0606 NaN 1 0 Median 1.3437 1.1465 NaN 1 0 Median 8571400 3934500 4636900 5016700 2267600 2749100 208430 90426 118000 0 0 0 885440 397270 488170 2110100 1018900 1091300 350670 160300 190380 38854 3513 40800 205959;205960;205961;205962;205963 209304 209304 1 YFTDAGLK ELFPVNRQSVDHFAKYFTDAGLKELSDFLR SVDHFAKYFTDAGLKELSDFLRVQQSLGTR K Y F L K E 1 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 913.45453 E7ETZ4;Q9Y6E2;B5MCH7;B5MCE7;E9PFD4;Q75MG1 E7ETZ4 233 240 BZW2 Basic leucine zipper and W2 domain-containing protein 2 yes no 2 0.047633 35.249 By MS/MS 1 0.81783 0.79092 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81783 0.79092 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11983000 6332800 5650700 0 0 0 0 0 0 11983000 6332800 5650700 0 0 0 0 0 0 0 0 0 38855 892 40801 205964 209305 209305 1 YFTEAGLK ELFPANKQSVEHFTKYFTEAGLKELSEYVR SVEHFTKYFTEAGLKELSEYVRNQQTIGAR K Y F L K E 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 927.47018 Q7L1Q6;C9IZ80 Q7L1Q6 232 239 BZW1 Basic leucine zipper and W2 domain-containing protein 1 yes no 2 0.0035088 91.906 By MS/MS By MS/MS By matching By MS/MS By matching 1 1 2 1 1 1.1924 1.0584 30.037 6 Median 1.1941 1.1157 NaN 1 1 Median 1.1437 0.97417 NaN 1 0 Median 1.5722 1.6395 24.173 2 0 Median 1.1907 1.0041 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0097 0.84484 NaN 1 0 Median 40009000 17270000 22738000 6410400 2775500 3634900 25347000 11042000 14304000 6519700 2639400 3880300 1086300 448720 637620 0 0 0 645390 364310 281080 38856 3219 40802 205965;205966;205967;205968;205969;205970 209306;209307;209308;209309 209307 4 YFTWDEVAQR DPVAAETAAQGPTPRYFTWDEVAQRSGCEE GPTPRYFTWDEVAQRSGCEERWLVIDRKVY R Y F Q R S 1 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 10 0 1313.6041 O60427;H7C2V0;A0A0A0MR51;H0YB97 O60427 19 28 FADS1 Fatty acid desaturase 1 yes no 2 0.00036818 122.52 By MS/MS By MS/MS By matching 1 1 1 0.88103 0.90396 28.433 3 Median 0.8625 0.84459 NaN 1 0 Median 1.6763 1.4248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.88103 0.90396 NaN 1 0 Median NaN NaN NaN 0 0 Median 15337000 7391600 7945400 11879000 6219100 5660100 2490600 714460 1776100 0 0 0 0 0 0 967280 458050 509230 0 0 0 38857 1614 40803 205971;205972;205973 209310;209311;209312;209313 209310 4 YFTWDPSR CDVIWLDIEHADGKRYFTWDPSRFPQPRTM EHADGKRYFTWDPSRFPQPRTMLERLASKR R Y F S R F 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 8 0 1070.4821 E9PKU7;Q14697;F5H6X6 Q14697 438 445 GANAB Neutral alpha-glucosidase AB no no 2 0.0072183 67.981 By MS/MS By MS/MS By matching 3 4 1 1.0659 0.99718 9.434 8 Median 0.96129 0.94348 8.9574 3 0 Median 1.196 1.0284 8.2561 4 0 Median 0.94888 1.016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37898000 18750000 19148000 19343000 9894600 9448000 16836000 7796900 9038800 1719200 1058300 660880 0 0 0 0 0 0 0 0 0 38858 2896;951 40804 205974;205975;205976;205977;205978;205979;205980;205981 209314;209315;209316;209317;209318;209319 209314 6 YFTWDPSRFPQPR CDVIWLDIEHADGKRYFTWDPSRFPQPRTM KRYFTWDPSRFPQPRTMLERLASKRRKLVA R Y F P R T 0 2 0 1 0 1 0 0 0 0 0 0 0 2 3 1 1 1 1 0 0 0 13 1 1695.8158 E9PKU7;Q14697;F5H6X6 Q14697 438 450 GANAB Neutral alpha-glucosidase AB no no 3 0.00049928 51.774 By MS/MS 1 0.6889 0.76539 NaN 1 Median 0.6889 0.76539 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14585000 8365600 6219600 14585000 8365600 6219600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38859 2896;951 40805 205982 209320;209321;209322 209320 3 YFVEAGAMAVR NVILTTGGIDDMCLKYFVEAGAMAVRRVLK MCLKYFVEAGAMAVRRVLKRDLKRIAKASG K Y F V R R 3 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 1 2 0 0 11 0 1212.5961 P17987;E7ERF2;E7EQR6;F5H282;F5GZ03 P17987 299 309 TCP1 T-complex protein 1 subunit alpha yes no 2 0.00016956 112.84 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 1 2 1.1614 1.1087 71.934 8 Median 1.1537 1.1022 113.38 3 1 Median 1.2069 1.0326 10.885 2 0 Median 1.1691 1.1634 NaN 1 0 Median 1.2988 1.1037 54.085 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 361250000 227750000 133500000 271270000 187250000 84015000 68525000 30798000 37727000 18351000 8295100 10056000 3108200 1405100 1703100 0 0 0 0 0 0 38860 2051 40806;40807 205983;205984;205985;205986;205987;205988;205989;205990 209323;209324;209325;209326;209327;209328;209329;209330;209331;209332;209333 209323 815 11 YFVISNTTGYNDR LLKEDVRNNSVWNQRYFVISNTTGYNDRAV QRYFVISNTTGYNDRAVLEREVQYTLEMIK R Y F D R A 0 1 2 1 0 0 0 1 0 1 0 0 0 1 0 1 2 0 2 1 0 0 13 0 1548.7209 B3KVN2;E9PQP6;P49354 B3KVN2 90 102 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha yes no 2 2.0803E-05 123.63 By MS/MS By matching 1 1 1.242 1.1376 20.539 2 Median 1.023 0.9838 NaN 1 0 Median 1.5078 1.3154 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9895700 4615500 5280200 9081500 4287300 4794300 814170 328220 485950 0 0 0 0 0 0 0 0 0 0 0 0 38861 587 40808 205991;205992 209334 209334 1 YFVQGMGYMPSASMTR LPQISQPAKLAEAFKYFVQGMGYMPSASMT FVQGMGYMPSASMTRLMRSRTASGSSVTSL K Y F T R L 1 1 0 0 0 1 0 2 0 0 0 0 3 1 1 2 1 0 2 1 0 0 16 0 1824.7997 Q92597;E5RJY1;E7ESM1 Q92597 307 322 NDRG1 Protein NDRG1 yes no 2 5.8317E-10 105.17 By MS/MS By MS/MS 3 2 1.2632 1.1781 10.009 5 Median 1.1799 1.1781 9.0416 3 0 Median 1.3835 1.2237 14.765 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25261000 11797000 13464000 24406000 11425000 12981000 854790 371850 482940 0 0 0 0 0 0 0 0 0 0 0 0 38862 3540 40809;40810 205993;205994;205995;205996;205997 209335;209336;209337;209338;209339;209340 209338 1760 6 YFYFYNTGLQNQR YDYPKYSCHFKKGKRYFYFYNTGLQNQRVL KRYFYFYNTGLQNQRVLYVQDSLEGEARVF R Y F Q R V 0 1 2 0 0 2 0 1 0 0 1 0 0 2 0 0 1 0 3 0 0 0 13 0 1712.7947 A0A499FJL1;P48147 A0A499FJL1 20 32 PREP Prolyl endopeptidase yes no 2 6.7575E-07 166.33 By MS/MS By matching By matching 1 2 1 1.0921 1.0716 17.117 4 Median 0.92849 0.87859 NaN 1 0 Median 1.3685 1.2141 12.705 2 0 Median 0.97838 1.0348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12180000 5567500 6612100 9801500 4463100 5338400 681960 243780 438180 1696100 860640 835470 0 0 0 0 0 0 0 0 0 38863 478 40811 205998;205999;206000;206001 209341;209342 209342 2 YFYTSVSRPGR ALALTETWAGSHSMRYFYTSVSRPGRGEPR HSMRYFYTSVSRPGRGEPRFISVGYVDDTQ R Y F G R G 0 2 0 0 0 0 0 1 0 0 0 0 0 1 1 2 1 0 2 1 0 0 11 1 1331.6622 A0A1W2PPR8;P01889;F6U0H7 A0A1W2PPR8 31 41 HLA-B HLA class I histocompatibility antigen, B-7 alpha chain no no 2;3 0.00099637 99.442 By MS/MS 2 0.90037 0.94735 NaN 1 Median 0.90037 0.94735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4867800 2449900 2417800 4867800 2449900 2417800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38864 339 40812 206002;206003 209343;209344 209343 2 YGAAEPHTIAAFLGGAAAQEVIK LSVMVKDDYVHEFCRYGAAEPHTIAAFLGG IAAFLGGAAAQEVIKIITKQFVIFNNTYIY R Y G I K I 7 0 0 0 0 1 2 3 1 2 1 1 0 1 1 0 1 0 1 1 0 0 23 0 2284.1852 Q13564;J3QLH4 Q13564 485 507 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes no 3 0.027624 12.929 By MS/MS 1 0.87574 0.84559 NaN 1 Median 0.87574 0.84559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2154600 1096800 1057800 2154600 1096800 1057800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38865 2825 40813 206004 209345 209345 1 YGAATANYMEVVSLLK NDARMNLAIALTAARYGAATANYMEVVSLL GAATANYMEVVSLLKKTDPQTGKVRVSGAR R Y G L K K 3 0 1 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 2 2 0 0 16 0 1728.8757 P43304;F5GYK7 P43304 239 254 GPD2 Glycerol-3-phosphate dehydrogenase, mitochondrial;Glycerol-3-phosphate dehydrogenase yes no 2 0.03483 23.987 By MS/MS By matching 1 1 0.94111 0.92425 2.612 2 Median NaN NaN NaN 0 0 Median 1.067 0.94148 NaN 1 0 Median 0.83007 0.90734 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2708400 1405400 1303000 0 0 0 2471400 1266300 1205100 237030 139130 97903 0 0 0 0 0 0 0 0 0 38866 2325 40814 206005;206006 209346 209346 1 YGAATFTSAR SSTQDTVVALHALSRYGAATFTSARKAAQV HALSRYGAATFTSARKAAQVTIQSSGTFST R Y G A R K 3 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 10 0 1043.5036 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1268 1277 yes yes 2 9.2008E-12 146.81 By MS/MS By MS/MS By MS/MS 3 4 1 0.074747 0.062833 114.35 5 Median 0.18733 0.18331 165.35 2 2 Median 0.074747 0.062833 94.726 3 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42479000 40855000 1624500 5292100 4665500 626630 36310000 35313000 997830 0 0 0 876500 876500 0 0 0 0 0 0 0 + 38867 734 40815 206007;206008;206009;206010;206011;206012;206013;206014 209347;209348;209349;209350;209351;209352;209353;209354 209352 8 YGAFLLR RMLKRFRQEKAVWIKYGAFLLRRSQAAASH QEKAVWIKYGAFLLRRSQAAASHRVLQRAL K Y G L R R 1 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 838.47012 Q14690;A0A3B3IUD7 Q14690 1731 1737 PDCD11 Protein RRP5 homolog yes no 2 0.0015613 130.84 By matching By MS/MS By matching By MS/MS By matching 1 2 1 2 2 1.267 1.2402 8.4789 8 Median NaN NaN NaN 0 0 Median 1.3634 1.1945 NaN 1 0 Median 1.1988 1.307 1.1336 2 0 Median 1.7031 1.4896 NaN 1 0 Median 1.156 1.2216 4.3474 2 0 Median 1.3986 1.1746 5.482 2 0 Median 17693000 7298500 10394000 0 0 0 572980 261580 311400 12149000 5115400 7034100 244920 75578 169340 4053900 1580500 2473500 671570 265490 406070 38868 448 40816 206015;206016;206017;206018;206019;206020;206021;206022 209355;209356;209357;209358;209359 209358 5 YGAGQQDLATPLESGAGAR AAKAQGFGDAKSRARYGAGQQDLATPLESG QQDLATPLESGAGARGSFNKFQPQPSTPQP R Y G A R G 4 1 0 1 0 2 1 4 0 0 2 0 0 0 1 1 1 0 1 0 0 0 19 0 1860.8966 Q9H161 Q9H161 66 84 ALX4 Homeobox protein aristaless-like 4 yes yes 2 5.7819E-08 80.522 By MS/MS 1 0.79503 0.79782 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79503 0.79782 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4808000 2107500 2700500 0 0 0 0 0 0 4808000 2107500 2700500 0 0 0 0 0 0 0 0 0 38869 3932 40817 206023 209360 209360 1 YGAHNYHPLPVALER QGPPTSDDIFEREYKYGAHNYHPLPVALER YGAHNYHPLPVALERGKGIYLWDVEGRKYF K Y G E R G 2 1 1 0 0 0 1 1 2 0 2 0 0 0 2 0 0 0 2 1 0 0 15 0 1735.8794 P04181 P04181 50 64 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2;3;4 2.4999E-26 193.73 By MS/MS By MS/MS By MS/MS By MS/MS 7 2 4 3 0.8691 0.85785 50.173 16 Median 0.85507 0.8561 75.775 7 1 Median 1.0789 0.93839 9.1137 2 0 Median 0.83042 0.8697 25.359 4 0 Median 0.97795 0.84149 12.904 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 520620000 240900000 279720000 309880000 140560000 169330000 139400000 64959000 74437000 41662000 22240000 19423000 29675000 13146000 16529000 0 0 0 0 0 0 38870 1846 40818 206024;206025;206026;206027;206028;206029;206030;206031;206032;206033;206034;206035;206036;206037;206038;206039 209361;209362;209363;209364;209365;209366;209367;209368;209369;209370;209371;209372;209373;209374;209375;209376;209377;209378;209379;209380;209381;209382;209383;209384 209368 24 YGAIRDIDLK PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG DVFYKYGAIRDIDLKNRRGGPPFAFVEFED K Y G L K N 1 1 0 2 0 0 0 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 10 1 1162.6346 J3KTL2;Q07955;J3QQV5;J3KSW7 J3KTL2 39 48 SRSF1 Serine/arginine-rich splicing factor 1 yes no 2 0.00017929 140.5 By MS/MS 2 1.1395 1.2288 3.7012 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1395 1.2288 3.7012 2 1 Median NaN NaN NaN 0 0 Median 54607000 25020000 29588000 0 0 0 0 0 0 0 0 0 0 0 0 54607000 25020000 29588000 0 0 0 38871 1337 40819 206040;206041 209385;209386;209387 209385 3 YGALALQEIFDGIQPK FIKSFLVFINLYCIKYGALALQEIFDGIQP GALALQEIFDGIQPKMFGMVLEKIIIPEIQ K Y G P K M 2 0 0 1 0 2 1 2 0 2 2 1 0 1 1 0 0 0 1 0 0 0 16 0 1761.9301 P55060 P55060 801 816 CSE1L Exportin-2 yes yes 2 0.00017256 62.303 By MS/MS By MS/MS By matching 1 2 1 1.1613 1.052 4.6992 4 Median 1.1119 1.0806 NaN 1 1 Median 1.1613 1.0075 5.3761 2 0 Median NaN NaN NaN 0 0 Median 1.1954 1.0574 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11765000 5445900 6318700 6910000 3541300 3368700 4762900 1868500 2894300 0 0 0 91678 36013 55665 0 0 0 0 0 0 38872 2493 40820 206042;206043;206044;206045 209388;209389 209388 2 YGALVICETSEQK GAMQSPSLHKLVLGKYGALVICETSEQKTN GKYGALVICETSEQKTNLEDVGRRLGQHVV K Y G Q K T 1 0 0 0 1 1 2 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1496.7181 P43897 P43897 234 246 TSFM Elongation factor Ts, mitochondrial yes yes 2 0.0094391 36.525 By MS/MS 2 0.94018 0.80047 25.157 2 Median NaN NaN NaN 0 0 Median 0.94018 0.80047 25.157 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5838000 2842600 2995400 0 0 0 5838000 2842600 2995400 0 0 0 0 0 0 0 0 0 0 0 0 38873 2328 40821 206046;206047 209390 209390 1 YGASLLHTYAGPSLLVLGPR VYLNESSVLHTLRQRYGASLLHTYAGPSLL LHTYAGPSLLVLGPRGAPAVYSEKVMHMFK R Y G P R G 2 1 0 0 0 0 0 3 1 0 5 0 0 0 2 2 1 0 2 1 0 0 20 0 2084.1419 Q92614;A0A0D9SFK2;H0YEV9 Q92614 429 448 MYO18A Unconventional myosin-XVIIIa yes no 3 0.00033263 32.181 By MS/MS By MS/MS By matching 2 1 1 0.83703 0.7831 17.015 4 Median 0.83703 0.83996 8.9681 2 2 Median NaN NaN NaN 0 0 Median 0.53783 0.59692 NaN 1 0 Median 0.89346 0.77789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4486800 2697200 1789600 2324800 1329600 995190 0 0 0 1965300 1248100 717170 196730 119540 77191 0 0 0 0 0 0 38874 267 40822 206048;206049;206050;206051 209391;209392;209393 209393 3 YGDAFIR LEQTEEYVNGQLKNKYGDAFIRGNNVLYIS VNGQLKNKYGDAFIRGNNVLYISTQKRRM_ K Y G I R G 1 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 840.413 P62312 P62312 60 66 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.002035 113.08 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 2 1 1.269 1.0264 8.9707 7 Median 1.241 1.1873 7.0863 2 1 Median 1.269 1.0264 NaN 1 0 Median 0.99068 0.99036 NaN 1 0 Median 1.3091 0.98861 4.6684 2 0 Median 1.031 1.0604 NaN 1 0 Median NaN NaN NaN 0 0 Median 114400000 52501000 61899000 35837000 16375000 19462000 21763000 9536300 12227000 34027000 16205000 17822000 9753100 4292600 5460500 13019000 6092100 6926900 0 0 0 38875 2584 40823 206052;206053;206054;206055;206056;206057;206058 209394;209395;209396;209397;209398;209399;209400;209401;209402 209395 9 YGDFFIR DKDMIHIADTKVARRYGDFFIRQIHKFEEL ADTKVARRYGDFFIRQIHKFEELNRTLKKM R Y G I R Q 0 1 0 1 0 0 0 1 0 1 0 0 0 2 0 0 0 0 1 0 0 0 7 0 916.4443 B0QY89;Q9Y262;B0QY90;H0Y7E6 B0QY89 582 588 EIF3L Eukaryotic translation initiation factor 3 subunit L yes no 2 0.015285 71.949 By MS/MS By matching By matching By matching 3 2 1 1 1.1172 1.031 13.697 7 Median 1.0734 1.031 11.646 3 0 Median 1.447 1.2525 2.0695 2 0 Median NaN NaN NaN 0 0 Median 1.1172 0.94988 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.05 0.92852 NaN 1 0 Median 12062000 5850000 6211700 11168000 5444700 5723400 447250 189660 257590 0 0 0 360190 171120 189080 0 0 0 86168 44461 41707 38876 554 40824 206059;206060;206061;206062;206063;206064;206065 209403;209404 209403 2 YGDFNKEVHK PETAVLLASYAVQSKYGDFNKEVHKSGYLA AVQSKYGDFNKEVHKSGYLAGDKLLPQRVL K Y G H K S 0 0 1 1 0 0 1 1 1 0 0 2 0 1 0 0 0 0 1 1 0 0 10 1 1235.5935 P26038 P26038 134 143 MSN Moesin yes yes 3 0.0041291 40.715 By MS/MS By matching By matching 2 1 1 1.1422 1.125 13.597 4 Median 1.1087 1.0988 8.7786 2 0 Median 1.1498 1.0825 NaN 1 0 Median 1.2254 1.4066 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9700500 4220900 5479600 7289000 3302700 3986200 1007000 435830 571130 1404600 482340 922250 0 0 0 0 0 0 0 0 0 38877 2139 40825 206066;206067;206068;206069 209405;209406 209406 2 YGDFRADDADEFGYSR NAQESAKSARLNLWRYGDFRADDADEFGYS GDFRADDADEFGYSR_______________ R Y G S R - 2 2 0 4 0 0 1 2 0 0 0 0 0 2 0 1 0 0 2 0 0 0 16 1 1882.7758 Q7KZF4 Q7KZF4 895 910 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 0.00016255 45.883 By MS/MS By matching 2 1 1.0749 1.242 7.9221 3 Median 1.061 1.1787 10.359 2 1 Median NaN NaN NaN 0 0 Median 1.0749 1.242 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21402000 10269000 11133000 20223000 9740600 10482000 0 0 0 1179500 528200 651310 0 0 0 0 0 0 0 0 0 38878 3214 40826 206070;206071;206072 209407;209408;209409 209407 3 YGDGGSSFQSTTGHCVHMR GRDLNYCFSGMSDHRYGDGGSSFQSTTGHC GSSFQSTTGHCVHMRGLPYRATENDIYNFF R Y G M R G 0 1 0 1 1 1 0 4 2 0 0 0 1 1 0 3 2 0 1 1 0 0 19 0 2082.8636 P55795 P55795 276 294 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 3;4 3.5373E-14 108.34 By MS/MS By matching By MS/MS 2 2 2 1.0334 1.0251 23.221 6 Median NaN NaN NaN 0 0 Median 1.7603 1.5196 16.612 2 0 Median 1.0096 1.0001 3.4357 2 0 Median NaN NaN NaN 0 0 Median 0.99201 0.99111 4.8122 2 0 Median NaN NaN NaN 0 0 Median 26829000 12623000 14206000 0 0 0 4094300 1523500 2570800 2319000 1002300 1316700 0 0 0 20416000 10097000 10319000 0 0 0 38879 2502 40827 206073;206074;206075;206076;206077;206078 209410;209411;209412;209413 209410 4 YGDGGSTFQSTTGHCVHMR GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC GSTFQSTTGHCVHMRGLPYRATENDIYNFF R Y G M R G 0 1 0 1 1 1 0 4 2 0 0 0 1 1 0 2 3 0 1 1 0 0 19 0 2096.8793 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;D6RIT2;H0YBG7 P31943 276 294 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 3;4 1.2407E-18 126.63 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 6 2 1 8 3 1.1667 1.0583 14.169 21 Median 1.1606 1.1555 NaN 1 0 Median 1.4609 1.2443 13.308 6 0 Median 1.0812 1.0782 11.326 2 1 Median 1.5037 1.3082 NaN 1 0 Median 1.0179 1.0378 11.255 8 0 Median 1.0779 0.92928 11.545 3 2 Median 197930000 97403000 100530000 1918400 723200 1195200 16064000 6714300 9349900 13323000 6535300 6787900 2574100 1235200 1338900 156870000 78460000 78411000 7176700 3734300 3442300 38880 1136 40828 206079;206080;206081;206082;206083;206084;206085;206086;206087;206088;206089;206090;206091;206092;206093;206094;206095;206096;206097;206098;206099 209414;209415;209416;209417;209418;209419;209420;209421;209422;209423;209424;209425;209426;209427;209428;209429;209430;209431 209418 17 YGDGIQLTR DCLMRAELIVQPELKYGDGIQLTRSRELDE VQPELKYGDGIQLTRSRELDECFAQANDQM K Y G T R S 0 1 0 1 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1021.5193 P15924 P15924 95 103 DSP Desmoplakin yes yes 2 6.0476E-05 121.05 By MS/MS By MS/MS 1 2 0.89128 0.74167 5.9299 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89128 0.74167 5.9299 2 2 Median 4842500 2444200 2398300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4842500 2444200 2398300 38881 2021 40829 206100;206101;206102 209432;209433;209434 209433 3 YGDLANWMIPGK GHVDLTMLGAMQVSKYGDLANWMIPGKMVK VSKYGDLANWMIPGKMVKGMGGAMDLVSSA K Y G G K M 1 0 1 1 0 0 0 2 0 1 1 1 1 0 1 0 0 1 1 0 0 0 12 0 1363.6595 P55809;E9PDW2;Q9BYC2 P55809 407 418 OXCT1;OXCT2 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial;Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial yes no 2 0.0052635 41.448 By MS/MS By matching 1 1 1.0185 0.91989 43.116 2 Median 0.72917 0.67815 NaN 1 0 Median 1.4225 1.2478 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10646000 6320100 4326300 10356000 6213000 4142800 290590 107140 183450 0 0 0 0 0 0 0 0 0 0 0 0 38882 2503 40830 206103;206104 209435 209435 1 YGDLLPADGILIQGNDLK LPVAEIVVGDIAQVKYGDLLPADGILIQGN LLPADGILIQGNDLKIDESSLTGESDHVKK K Y G L K I 1 0 1 3 0 1 0 3 0 2 4 1 0 0 1 0 0 0 1 0 0 0 18 0 1914.0098 P20020;P23634 P23634 216 233 ATP2B1;ATP2B4 Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 4 no no 2 5.5465E-06 72.496 By MS/MS By MS/MS 1 3 1.1247 0.98852 17.589 4 Median 0.75281 0.75311 NaN 1 0 Median 1.2047 1.0584 9.8446 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11545000 6417700 5127100 8509200 4952500 3556600 3035600 1465200 1570400 0 0 0 0 0 0 0 0 0 0 0 0 38883 2119;2071 40831 206105;206106;206107;206108 209436;209437;209438 209437 3 YGDLYQASFDADSATLR QMKQSMEEFRSLASRYGDLYQASFDADSAT DLYQASFDADSATLRNVELQQQSCLLISHA R Y G L R N 3 1 0 3 0 1 0 1 0 0 2 0 0 1 0 2 1 0 2 0 0 0 17 0 1891.8588 Q9NVH2 Q9NVH2 685 701 INTS7 Integrator complex subunit 7 yes yes 2 2.3786E-05 74.326 By MS/MS 1 1.305 1.4017 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.305 1.4017 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3257600 1413100 1844500 0 0 0 0 0 0 3257600 1413100 1844500 0 0 0 0 0 0 0 0 0 38884 4131 40832 206109 209439;209440 209439 2 YGDSEFTVQSTTGHCVHMR GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC EFTVQSTTGHCVHMRGLPYKATENDIYNFF R Y G M R G 0 1 0 1 1 1 1 2 2 0 0 0 1 1 0 2 3 0 1 2 0 0 19 0 2210.9473 P52597 P52597 276 294 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3;4 4.5813E-19 152.71 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 4 2 1 3 1.0425 1.0029 9.2698 12 Median 1.0904 1.0798 12.106 2 0 Median 1.259 1.0709 11.756 4 0 Median 0.97663 0.97153 3.5212 2 0 Median 1.0415 0.90261 NaN 1 0 Median 1.0089 1.0099 6.2837 3 0 Median NaN NaN NaN 0 0 Median 165900000 83906000 81998000 8224400 3513500 4711000 11187000 4762400 6424600 15440000 8494900 6945100 5050400 2302700 2747700 126000000 64833000 61170000 0 0 0 38885 2452 40833;40834 206110;206111;206112;206113;206114;206115;206116;206117;206118;206119;206120;206121 209441;209442;209443;209444;209445;209446;209447;209448;209449;209450 209447 1149 10 YGDSGEQIAGFVK LNQKMEVQRRPWLVKYGDSGEQIAGFVKEF VKYGDSGEQIAGFVKEFSHIAFLTIKGAGH K Y G V K E 1 0 0 1 0 1 1 3 0 1 0 1 0 1 0 1 0 0 1 1 0 0 13 0 1369.6514 X6R8A1;X6R5C5;P10619 X6R8A1 448 460 CTSA Carboxypeptidase;Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes no 2 7.268E-07 113.47 By MS/MS By MS/MS By matching By matching By matching 2 1 1 1 2 1.2322 1.1571 45.604 6 Median 1.2494 1.1695 13.301 2 0 Median 1.4676 1.2577 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3283 1.524 NaN 1 0 Median 0.68331 0.61438 51.813 2 0 Median 55680000 23255000 32425000 36541000 14677000 21864000 7624300 3106400 4518000 8984700 4330000 4654700 0 0 0 1929100 801510 1127600 600820 339850 260970 38886 1944 40835 206122;206123;206124;206125;206126;206127;206128 209451;209452;209453;209454 209451 4 YGDSLYR NLVDNVAKDYVRLMKYGDSLYRCKQLKRAA KDYVRLMKYGDSLYRCKQLKRAALGRMCTV K Y G Y R C 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 872.40283 Q9BZE4;Q5T3R7 Q9BZE4 119 125 GTPBP4 Nucleolar GTP-binding protein 1 yes no 2 0.034996 60.788 By matching By MS/MS 1 2 0.99724 1.0331 20.848 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99724 1.0532 NaN 1 0 Median 1.0368 0.8668 24.825 2 1 Median 6216600 3222400 2994200 0 0 0 0 0 0 0 0 0 0 0 0 3538600 1901500 1637100 2678000 1320900 1357100 38887 3898 40836 206129;206130;206131 209455;209456;209457 209457 3 YGDYNKEIHKPGYLANDR PETAVLLASYAVQAKYGDYNKEIHKPGYLA YNKEIHKPGYLANDRLLPQRVLEQHKLTKE K Y G D R L 1 1 2 2 0 0 1 2 1 1 1 2 0 0 1 0 0 0 3 0 0 0 18 2 2152.0338 P35241;A0A2R8Y5S7;A0A2R8Y7M3;E9PNV3;A0A2R8Y5P0 P35241 134 151 RDX Radixin yes no 4 0.00097636 30.956 By MS/MS 1 0.71811 0.79094 NaN 1 Median 0.71811 0.79094 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14334000 8440500 5893600 14334000 8440500 5893600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38888 2235 40837 206132 209458;209459 209459 2 YGEAGEGPGWGGAHPR HPDAFPSLRALIAARYGEAGEGPGWGGAHP GEAGEGPGWGGAHPRICLQPPPTSRTPFPP R Y G P R I 2 1 0 0 0 0 2 6 1 0 0 0 0 0 2 0 0 1 1 0 0 0 16 0 1596.707 P26640;A0A140T954;A2ABF4;A0A0G2JJT9 P26640 24 39 VARS Valine--tRNA ligase yes no 2;3 7.9574E-10 103.34 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 3 3 2 0.98594 0.86488 23.645 11 Median 0.88193 0.85956 0.87232 2 0 Median 0.96393 0.81355 5.0174 2 0 Median 0.9469 0.98008 2.8707 2 0 Median 1.2769 1.0892 25.68 3 0 Median NaN NaN NaN 0 0 Median 0.95488 0.76866 45.947 2 0 Median 55394000 26388000 29006000 7962400 4199000 3763400 12676000 6180100 6495900 19465000 8893900 10571000 14642000 6860900 7780900 0 0 0 649020 254360 394660 38889 2148 40838 206133;206134;206135;206136;206137;206138;206139;206140;206141;206142;206143;206144 209460;209461;209462;209463;209464;209465;209466;209467;209468;209469;209470;209471 209466 11 YGEDGLAGESVEFQNLATLKPSNK DATVRNSINQVVQLRYGEDGLAGESVEFQN SVEFQNLATLKPSNKAFEKKFRFDYTNERA R Y G N K A 2 0 2 1 0 1 3 3 0 0 3 2 0 1 1 2 1 0 1 1 0 0 24 1 2566.2551 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 891 914 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 3 0.0034639 24.637 By MS/MS By matching 1 1 0.99812 1.035 21.485 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76847 0.88915 NaN 1 0 Median 1.2964 1.2048 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10219000 6022300 4197000 0 0 0 0 0 0 9979900 5928100 4051800 239370 94156 145220 0 0 0 0 0 0 38890 486 40839 206145;206146 209472 209472 1 YGEDSEQFR LYSLELAGLDEIGKRYGEDSEQFRDASKIL DEIGKRYGEDSEQFRDASKILVDALQKFAD R Y G F R D 0 1 0 1 0 1 2 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 9 0 1129.4676 O75787;A0A1B0GVW0;A0A1B0GUT7;A0A1B0GTB0;A0A1C7CYW4;A0A1B0GVB9;A0A1B0GTU8;A0A1B0GWJ8;H7C3E1;B7Z413;B7Z1I9;A0A1B0GVC7;A0A1B0GU12;A0A1B0GWD6;A0A1B0GVI9 O75787 226 234 ATP6AP2 Renin receptor yes no 2 0.00064128 107.66 By MS/MS 1 1.4516 1.2296 NaN 1 Median NaN NaN NaN 0 0 Median 1.4516 1.2296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1186400 446610 739820 0 0 0 1186400 446610 739820 0 0 0 0 0 0 0 0 0 0 0 0 38891 316 40840 206147 209473 209473 1 YGEGDSLTLQQLK PAISAASFLQDLIHRYGEGDSLTLQQLKAL HRYGEGDSLTLQQLKALLNHLDVGVGRGNV R Y G L K A 0 0 0 1 0 2 1 2 0 0 3 1 0 0 0 1 1 0 1 0 0 0 13 0 1450.7304 E5RFZ8;E5RGA7;E5RJ40;E5RJG5;E5RIP4;Q15043 E5RFZ8 51 63 SLC39A14 Zinc transporter ZIP14 yes no 2 1.4533E-06 115.57 By MS/MS By matching 1 1 0.386 0.37743 172.07 2 Median 1.2701 1.2743 NaN 1 0 Median 0.11731 0.11179 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28353000 14201000 14152000 22751000 9314500 13436000 5602500 4886900 715530 0 0 0 0 0 0 0 0 0 0 0 0 38892 837 40841 206148;206149 209474;209475 209474 2 YGEGHQAWIIGIVEK REQAARFCAEIKSPKYGEGHQAWIIGIVEK YGEGHQAWIIGIVEKGNRTARIIDKPRIIE K Y G E K G 1 0 0 0 0 1 2 3 1 3 0 1 0 0 0 0 0 1 1 1 0 0 15 0 1698.873 P49903 P49903 345 359 SEPHS1 Selenide, water dikinase 1 yes yes 3 0.00024314 45.014 By matching By MS/MS 1 1 1.0994 1.0467 4.49 2 Median NaN NaN NaN 0 0 Median 1.1561 1.014 NaN 1 0 Median 1.0455 1.0805 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12279000 5883000 6396300 0 0 0 320810 171350 149460 11958000 5711600 6246900 0 0 0 0 0 0 0 0 0 38893 2404 40842 206150;206151 209476;209477 209477 2 YGEIPAELR ERAIYFDGDFGQIVRYGEIPAELRAAATDH FGQIVRYGEIPAELRAAATDHRQELIECVA R Y G L R A 1 1 0 0 0 0 2 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 9 0 1046.5397 Q96RP9;F8WAU4;C9IZ01 Q96RP9 235 243 GFM1 Elongation factor G, mitochondrial yes no 2 0.0052544 72.485 By MS/MS 1 1.0125 1.0651 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0125 1.0651 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4322000 2339300 1982700 0 0 0 0 0 0 4322000 2339300 1982700 0 0 0 0 0 0 0 0 0 38894 3728 40843 206152 209478 209478 1 YGEPGEVFINK PADITEDEFKRLFAKYGEPGEVFINKGKGF LFAKYGEPGEVFINKGKGFGFIKLESRALA K Y G N K G 0 0 1 0 0 0 2 2 0 1 0 1 0 1 1 0 0 0 1 1 0 0 11 0 1251.6136 P23246 P23246 320 330 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.00013635 85.731 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 5 3 1 1.0408 0.94683 17.333 18 Median 1.1985 1.0654 41.604 3 0 Median 1.1103 0.97142 9.852 3 0 Median 0.93113 0.94021 8.3929 4 0 Median 1.1791 1.0147 12.207 4 0 Median 0.88903 0.8505 5.9951 3 0 Median 1.1919 0.96923 NaN 1 0 Median 1271900000 634740000 637120000 41387000 18578000 22809000 27613000 11335000 16278000 730260000 373110000 357150000 153700000 69429000 84268000 291920000 150390000 141520000 26995000 11897000 15098000 38895 2107 40844 206153;206154;206155;206156;206157;206158;206159;206160;206161;206162;206163;206164;206165;206166;206167;206168;206169;206170;206171 209479;209480;209481;209482;209483;209484;209485;209486;209487;209488;209489;209490;209491;209492;209493;209494;209495;209496;209497;209498;209499;209500;209501;209502;209503;209504;209505;209506;209507;209508;209509;209510;209511 209503 33 YGEPSEVFINR PTDITEEDFKRLFERYGEPSEVFINRDRGF LFERYGEPSEVFINRDRGFGFIRLESRTLA R Y G N R D 0 1 1 0 0 0 2 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 11 0 1309.6303 Q8WXF1;X6RDA4 Q8WXF1 105 115 PSPC1 Paraspeckle component 1 yes no 2 5.0649E-09 128.12 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 4 1 1 0.70131 0.67462 78.179 8 Median NaN NaN NaN 0 0 Median 0.069596 0.079201 NaN 1 0 Median 0.685 0.6748 4.6718 2 0 Median 0.80958 0.6899 20.18 4 1 Median NaN NaN NaN 0 0 Median 0.80923 0.69709 NaN 1 0 Median 340160000 182540000 157620000 0 0 0 10943000 9713700 1229700 261980000 136210000 125770000 63675000 34904000 28771000 0 0 0 3564400 1713700 1850700 38896 3520 40845 206172;206173;206174;206175;206176;206177;206178;206179;206180 209512;209513;209514;209515;209516;209517;209518;209519;209520;209521 209516 10 YGEPTLR IGAEMALRTFGHLLRYGEPTLRRAVPLALA RTFGHLLRYGEPTLRRAVPLALALISVSNP R Y G L R R 0 1 0 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 1 0 0 0 7 0 834.42357 Q13200;H7C1H2 Q13200 681 687 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes no 2 0.0022148 108.24 By MS/MS By MS/MS 2 1 1.0103 0.87304 28.96 3 Median 1.1042 1.0981 36.423 2 0 Median 1.0103 0.87304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10846000 5390500 5455500 2798700 1395900 1402800 8047200 3994600 4052600 0 0 0 0 0 0 0 0 0 0 0 0 38897 2796 40846 206181;206182;206183 209522;209523;209524;209525 209524 4 YGEQGLR YEVLSNPEKRELYDRYGEQGLREGSGGGGG EKRELYDRYGEQGLREGSGGGGGMDDIFSH R Y G L R E 0 1 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 821.40317 O60884 O60884 69 75 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2 0.0031639 121.68 By matching By MS/MS By matching 2 3 2 1.2284 1.0712 25.285 7 Median 1.3282 1.3376 31.407 2 0 Median 1.2284 1.0468 1.8573 3 0 Median 1.0865 1.0729 45.567 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13704000 5872100 7831500 1979000 861070 1117900 10099000 4317200 5781400 1626000 693870 932160 0 0 0 0 0 0 0 0 0 38898 1637 40847 206184;206185;206186;206187;206188;206189;206190 209526;209527 209527 2 YGEYFPGTGDLR AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG FHKYGEYFPGTGDLRDIGAGKGKYYAVNYP K Y G L R D 0 1 0 1 0 0 1 3 0 0 1 0 0 1 1 0 1 0 2 0 0 0 12 0 1373.6252 Q13547;Q5TEE2;Q92769 Q13547 201 212 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2 4.456E-06 132.91 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 5 3 4 2 0.94704 0.89552 10.825 16 Median 0.99901 0.94426 NaN 1 0 Median 1.2227 1.0613 NaN 1 0 Median 0.82309 0.83745 13.201 5 1 Median 1.0961 0.92166 13.534 3 0 Median 0.87962 0.87954 3.7985 4 0 Median 1.1554 0.96515 9.819 2 0 Median 288470000 151040000 137420000 20521000 10641000 9879900 1578300 695210 883080 213810000 112490000 101320000 7393700 3495900 3897800 42238000 22315000 19923000 2924400 1405000 1519400 38899 2823;3555 40848 206191;206192;206193;206194;206195;206196;206197;206198;206199;206200;206201;206202;206203;206204;206205;206206 209528;209529;209530;209531;209532;209533;209534;209535;209536;209537;209538;209539;209540;209541;209542;209543;209544;209545;209546;209547 209530 20 YGFEPTQEGK KDFKDGTFDPDNLEKYGFEPTQEGKLFQLY DNLEKYGFEPTQEGKLFQLYPRNFLR____ K Y G G K L 0 0 0 0 0 1 2 2 0 0 0 1 0 1 1 0 1 0 1 0 0 0 10 0 1154.5244 Q8IXM3 Q8IXM3 117 126 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 3.4311E-07 131.22 By MS/MS By MS/MS 1 1 1.6221 1.4604 64.475 2 Median NaN NaN NaN 0 0 Median 2.7953 2.304 NaN 1 1 Median 0.94126 0.92571 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10194000 3601600 6592500 0 0 0 7394800 2100400 5294400 2799300 1501200 1298100 0 0 0 0 0 0 0 0 0 38900 3334 40849 206207;206208 209548;209549 209549 2 YGFIEGHVVIPR AQMEKALSIGFETCRYGFIEGHVVIPRIHP TCRYGFIEGHVVIPRIHPNSICGANTTSGP R Y G P R I 0 1 0 0 0 0 1 2 1 2 0 0 0 1 1 0 0 0 1 2 0 0 12 0 1385.7456 H0YD13;H0Y2P0;P16070;H0YDX6;H0YD17;H0YDW7;H0YCV9;H0Y5E4 H0YD13 79 90 CD44 CD44 antigen yes no 3 0.00037645 53.569 By MS/MS By matching 2 1 0.91691 0.87395 70.64 3 Median 1.4049 1.3758 64.173 2 0 Median 0.62388 0.53867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9853500 5189800 4663800 8238800 4166000 4072800 1614700 1023800 590970 0 0 0 0 0 0 0 0 0 0 0 0 38901 1139 40850 206209;206210;206211 209550;209551;209552;209553 209551 4 YGFLWPGLNVPLMK KRKDLNRGQIIGEGRYGFLWPGLNVPLMKN RYGFLWPGLNVPLMKNGAVQTIAQRSKEEQ R Y G M K N 0 0 1 0 0 0 0 2 0 0 3 1 1 1 2 0 0 1 1 1 0 0 14 0 1633.8691 P82675 P82675 137 150 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 0.026131 26.514 By MS/MS By matching By MS/MS By matching 1 1 1 1 0.89863 0.93655 13.501 4 Median 0.78413 0.76511 NaN 1 0 Median 1.1909 1.0594 NaN 1 0 Median 0.84371 0.92776 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95712 0.94542 NaN 1 0 Median NaN NaN NaN 0 0 Median 2348400 1230000 1118400 1176200 655990 520170 518290 228800 289490 534010 284520 249480 0 0 0 119950 60697 59254 0 0 0 38902 2653 40851 206212;206213;206214;206215 209554;209555 209555 2 YGFNEGHSFR GFEGGQTPFYIRIPKYGFNEGHSFRRQYKP IRIPKYGFNEGHSFRRQYKPLSLNRLQYLI K Y G F R R 0 1 1 0 0 0 1 2 1 0 0 0 0 2 0 1 0 0 1 0 0 0 10 0 1212.5312 Q9P015;E5RIZ4;E5RHF4 Q9P015 81 90 MRPL15 39S ribosomal protein L15, mitochondrial yes no 3 0.00013776 91.584 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3368 1.1839 32.54 4 Median 1.1572 1.084 NaN 1 0 Median 1.5444 1.2929 NaN 1 0 Median 0.81032 0.80133 NaN 1 1 Median 2.0901 1.7434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20606000 9605900 11000000 6516100 2362900 4153100 3105500 1177200 1928200 5969000 4451900 1517000 5015800 1613800 3402000 0 0 0 0 0 0 38903 4197 40852 206216;206217;206218;206219 209556;209557 209557 2 YGFQSLR ESNWFIINVIKLVWRYGFQSLRMHMWVEDV NVIKLVWRYGFQSLRMHMWVEDVLDKFMRI R Y G L R M 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 1 0 0 1 0 0 0 7 0 869.43955 Q9UHG3;F8W8W4;C9JM55;C9K055;C9JGT6 Q9UHG3 145 151 PCYOX1 Prenylcysteine oxidase 1 yes no 2 0.027519 51.787 By MS/MS By MS/MS 2 1 0.96597 0.95372 22.869 3 Median 0.92423 0.91686 5.5734 2 0 Median 1.5687 1.3544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9246700 4134100 5112600 7214500 3401700 3812800 2032200 732370 1299900 0 0 0 0 0 0 0 0 0 0 0 0 38904 4279 40853 206220;206221;206222 209558;209559 209559 2 YGGAPQALTLK LRDFLTPPLLSVRFRYGGAPQALTLKLPVT VRFRYGGAPQALTLKLPVTINKFFQPTEMA R Y G L K L 2 0 0 0 0 1 0 2 0 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1117.6132 O95782 O95782 846 856 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.022328 34.253 By MS/MS 1 1.0461 0.92049 NaN 1 Median NaN NaN NaN 0 0 Median 1.0461 0.92049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3003100 1394900 1608200 0 0 0 3003100 1394900 1608200 0 0 0 0 0 0 0 0 0 0 0 0 38905 1793 40854 206223 209560;209561 209561 2 YGGDEIPFSPYR AYVPDVTGRYTILIKYGGDEIPFSPYRVRA LIKYGGDEIPFSPYRVRAVPTGDASKCTVT K Y G Y R V 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 P21333;Q60FE5;A0A087WWY3 P21333 1622 1633 FLNA Filamin-A no no 2 4.3318E-15 190.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1 1 0.81354 0.79481 21.727 12 Median 0.84637 0.81257 10.207 3 0 Median 0.76748 0.63917 26.829 4 0 Median 0.8848 0.9485 12.148 2 0 Median 0.76021 0.66223 NaN 1 0 Median 1.0173 1.0488 NaN 1 0 Median 0.78612 0.65975 NaN 1 0 Median 332690000 177990000 154700000 207260000 110490000 96769000 69579000 39268000 30311000 42505000 22056000 20449000 3718000 2118100 1599900 8822400 3630300 5192100 810460 427180 383280 38906 2088;3120 40855 206224;206225;206226;206227;206228;206229;206230;206231;206232;206233;206234;206235 209562;209563;209564;209565;209566;209567;209568;209569;209570;209571;209572;209573;209574;209575;209576;209577;209578;209579 209567 18 YGGDEIPYSPFR SYLPDMSGRYTITIKYGGDEIPYSPFRIHA TIKYGGDEIPYSPFRIHALPTGDASKCLVT K Y G F R I 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 Q14315 Q14315 1616 1627 FLNC Filamin-C yes yes 2 4.1172E-06 121.83 By MS/MS By matching By matching By MS/MS By matching 2 1 1 1 1 1.0446 1.0666 31.526 6 Median 1.119 1.0695 3.0029 2 0 Median 0.80976 0.67301 NaN 1 0 Median 0.9804 1.0864 NaN 1 0 Median 0.74369 0.65281 NaN 1 0 Median 1.4075 1.4719 NaN 1 0 Median NaN NaN NaN 0 0 Median 48306000 23632000 24674000 34843000 17088000 17755000 6705700 3608100 3097600 3463700 1523200 1940500 1478600 779330 699230 1815200 633520 1181700 0 0 0 38907 2871 40856 206236;206237;206238;206239;206240;206241 209580;209581;209582;209583;209584 209580 5 YGGEAQMR CDREVSAWATRAFFRYGGEAQMRFPTTLPP ATRAFFRYGGEAQMRFPTTLPPPSNVGPIL R Y G M R F 1 1 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 8 0 910.3967 O75694;E9PF10 O75694 576 583 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.025095 42.914 By matching By MS/MS By matching By matching 1 1 1 1 1.0861 1.0385 12.989 4 Median NaN NaN NaN 0 0 Median 1.1842 1.0127 NaN 1 0 Median 0.99612 1.0649 NaN 1 0 Median 0.97824 0.85705 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3787 1.1682 NaN 1 0 Median 3461500 1540800 1920700 0 0 0 2501600 1093600 1407900 548720 232690 316030 260770 146190 114580 0 0 0 150460 68266 82193 38908 1692 40857 206242;206243;206244;206245 209585 209585 1 YGGEEEDQPIYLAVK RGPPVRLFTEEELARYGGEEEDQPIYLAVK YGGEEEDQPIYLAVKGVVFDVTSGKEFYGR R Y G V K G 1 0 0 1 0 1 3 2 0 1 1 1 0 0 1 0 0 0 2 1 0 0 15 0 1709.8148 Q9UMX5 Q9UMX5 55 69 NENF Neudesin yes yes 2 0.0011583 42.395 By MS/MS By matching 1 1 0.922 0.83828 4.8854 2 Median 0.91788 0.86775 NaN 1 0 Median 0.92614 0.80982 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4693200 2739700 1953500 4502600 2650400 1852200 190540 89282 101260 0 0 0 0 0 0 0 0 0 0 0 0 38909 4337 40858 206246;206247 209586;209587 209586 2 YGGELVPHFPAR TYVPLTAGMYTLTMKYGGELVPHFPARVKV TMKYGGELVPHFPARVKVEPAVDTSRIKVF K Y G A R V 1 1 0 0 0 0 1 2 1 0 1 0 0 1 2 0 0 0 1 1 0 0 12 0 1341.683 O75369;E7EN95 O75369 1208 1219 FLNB Filamin-B yes no 2;3 5.3187E-06 115.7 By MS/MS By MS/MS By MS/MS By matching 3 2 3 1 0.83275 0.72798 10.87 7 Median 0.77566 0.72798 7.7379 3 0 Median 0.8861 0.72424 1.3625 2 0 Median 0.56465 0.63113 NaN 1 0 Median 1.02 0.88613 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 87330000 48187000 39143000 61886000 35028000 26858000 23121000 11751000 11370000 1787700 1138900 648820 534960 269130 265830 0 0 0 0 0 0 38910 1664 40859 206248;206249;206250;206251;206252;206253;206254;206255;206256 209588;209589;209590;209591;209592;209593;209594;209595;209596;209597;209598;209599;209600;209601 209594 14 YGGFYINSGTLQFR SEAYDELVPASLTTKYGGFYINSGTLQFRQ KYGGFYINSGTLQFRQASESEDDFIKEKKK K Y G F R Q 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 1 1 0 2 0 0 0 14 0 1621.7889 Q9NPG3;K7EQR1 Q9NPG3 157 170 UBN1 Ubinuclein-1 yes no 2 0.0010403 51.092 By MS/MS By matching 1 1 1.1353 1.1183 2.8146 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0469 1.1408 NaN 1 0 Median 1.2312 1.0963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1902800 954830 947940 0 0 0 0 0 0 1785500 905840 879670 117260 48985 68275 0 0 0 0 0 0 38911 4051 40860 206257;206258 209602 209602 1 YGGISTASVDFEQPTR EKYGIPEPPEPKRRKYGGISTASVDFEQPT GGISTASVDFEQPTRDGLGSDNIGSRMLQA K Y G T R D 1 1 0 1 0 1 1 2 0 1 0 0 0 1 1 2 2 0 1 1 0 0 16 0 1726.8162 P98175 P98175 838 853 RBM10 RNA-binding protein 10 yes yes 2 3.5009E-10 107.18 By matching By MS/MS By MS/MS By MS/MS 1 2 1 2 0.80177 0.866 16.117 6 Median NaN NaN NaN 0 0 Median 1.2207 1.0794 NaN 1 0 Median 0.80177 0.866 0.59727 2 1 Median 1.1818 1.0069 NaN 1 0 Median 0.71167 0.74371 11.386 2 0 Median NaN NaN NaN 0 0 Median 43944000 24426000 19518000 0 0 0 779680 369900 409780 32479000 18219000 14261000 1572600 677050 895530 9112400 5160600 3951700 0 0 0 38912 2671 40861 206259;206260;206261;206262;206263;206264 209603;209604;209605;209606;209607 209603 5 YGGPNHIVGSPFK MYTPMAPGNYLISVKYGGPNHIVGSPFKAK VKYGGPNHIVGSPFKAKVTGQRLVSPGSAN K Y G F K A 0 0 1 0 0 0 0 3 1 1 0 1 0 1 2 1 0 0 1 1 0 0 13 0 1371.6935 O75369;E7EN95;A0A0A0MT44 O75369 2456 2468 FLNB Filamin-B yes no 2;3 6.2914E-33 160.36 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 2 0.85434 0.79988 27.342 10 Median 0.95871 0.94501 18.811 4 1 Linear 0.97383 0.86723 3.5255 3 2 Median 0.41479 0.46067 NaN 1 1 Median 0.67225 0.62651 45.139 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120680000 63851000 56826000 46675000 25746000 20929000 64614000 32424000 32190000 7126600 4329400 2797200 2260600 1351300 909270 0 0 0 0 0 0 38913 1664 40862 206265;206266;206267;206268;206269;206270;206271;206272;206273;206274;206275;206276;206277 209608;209609;209610;209611;209612;209613;209614;209615;209616;209617;209618;209619;209620;209621;209622 209611 15 YGGPPPDSVYSGQQPSVGTEIFVGK ERTGYTLDVTTGQRKYGGPPPDSVYSGQQP SGQQPSVGTEIFVGKIPRDLFEDELVPLFE K Y G G K I 0 0 0 1 0 2 1 5 0 1 0 1 0 1 4 3 1 0 2 3 0 0 25 0 2565.2387 B7Z645;O60506;F6UXX1 O60506 144 168 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q no no 2;3 0.00165 25.604 By matching By MS/MS By MS/MS By matching By matching 2 4 2 3 2 0.73095 0.71278 29.672 13 Median 0.73243 0.71561 0.56018 2 0 Median NaN NaN NaN 0 0 Median 0.79713 0.79634 17.121 4 2 Median 0.66518 0.56883 6.2201 2 0 Median 1.136 1.3123 42.267 3 0 Plateau 1.1154 0.9355 57.021 2 0 Median 48756000 27058000 21698000 7727900 4972200 2755600 0 0 0 27988000 14585000 13403000 4083200 2367300 1715800 8542100 4958500 3583600 414390 174710 239680 38914 1619;634 40863 206278;206279;206280;206281;206282;206283;206284;206285;206286;206287;206288;206289;206290 209623;209624;209625;209626;209627;209628;209629;209630;209631 209625 9 YGGPPPDSVYSGVQPGIGTEVFVGK ERTGYTLDVTTGQRKYGGPPPDSVYSGVQP SGVQPGIGTEVFVGKIPRDLYEDELVPLFE K Y G G K I 0 0 0 1 0 1 1 6 0 1 0 1 0 1 4 2 1 0 2 4 0 0 25 0 2506.238 O43390 O43390 147 171 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2;3 8.9738E-18 72.316 By matching By MS/MS By matching By MS/MS 1 4 2 7 0.51059 0.52288 21.914 14 Median 0.97372 0.98809 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.4885 0.49154 8.2178 4 0 Median 0.54203 0.48401 31.422 2 0 Median 0.51685 0.52704 12.694 7 1 Median NaN NaN NaN 0 0 Median 98572000 64100000 34472000 934890 424790 510100 0 0 0 54980000 36305000 18675000 878320 609180 269130 41779000 26761000 15018000 0 0 0 38915 1568 40864 206291;206292;206293;206294;206295;206296;206297;206298;206299;206300;206301;206302;206303;206304 209632;209633;209634;209635;209636;209637;209638;209639;209640;209641;209642;209643;209644;209645;209646;209647;209648;209649;209650;209651;209652 209636 21 YGGPQHIVGSPFK TYTPMAPGNYLIAIKYGGPQHIVGSPFKAK IKYGGPQHIVGSPFKAKVTGPRLSGGHSLH K Y G F K A 0 0 0 0 0 1 0 3 1 1 0 1 0 1 2 1 0 0 1 1 0 0 13 0 1385.7092 Q14315 Q14315 2577 2589 FLNC Filamin-C yes yes 2;3 8.3403E-07 124.1 By MS/MS By MS/MS By MS/MS 5 4 1 0.85814 0.80012 22.48 10 Median 1.0342 1.0376 11.258 5 4 Median 0.7664 0.67732 15.928 4 1 Median NaN NaN NaN 0 0 Median 0.75194 0.72016 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 133310000 70651000 62657000 76857000 37232000 39626000 54778000 32426000 22352000 0 0 0 1672500 993430 679020 0 0 0 0 0 0 38916 2871 40865 206305;206306;206307;206308;206309;206310;206311;206312;206313;206314 209653;209654;209655;209656;209657;209658;209659;209660;209661;209662 209660 10 YGGPYHIGGSPFK TYTPMAPGSYLISIKYGGPYHIGGSPFKAK IKYGGPYHIGGSPFKAKVTGPRLVSNHSLH K Y G F K A 0 0 0 0 0 0 0 4 1 1 0 1 0 1 2 1 0 0 2 0 0 0 13 0 1378.667 P21333;Q60FE5;A0A087WWY3 P21333 2501 2513 FLNA Filamin-A no no 2;3 1.9558E-42 167.09 By MS/MS By MS/MS By MS/MS By MS/MS By matching 8 4 2 2 1 0.86125 0.8201 23.77 16 Median 0.87272 0.83781 6.4906 7 1 Median 0.77736 0.69063 8.1696 4 1 Median 1.0245 1.1161 15.689 2 0 Median 0.86227 0.80686 1.264 2 0 Median 1.5508 1.6364 NaN 1 0 Median NaN NaN NaN 0 0 Median 303220000 157950000 145270000 186310000 94600000 91707000 91525000 50405000 41120000 19659000 10386000 9272900 3051700 1627200 1424500 2681400 930760 1750700 0 0 0 38917 2088;3120 40866 206315;206316;206317;206318;206319;206320;206321;206322;206323;206324;206325;206326;206327;206328;206329;206330;206331 209663;209664;209665;209666;209667;209668;209669;209670;209671;209672;209673;209674;209675;209676;209677;209678;209679;209680;209681;209682;209683;209684;209685 209667 23 YGGQPLFSEK DTYTSDLHFQVSKDRYGGQPLFSEKFPTLW VSKDRYGGQPLFSEKFPTLWSGARSTYGVT R Y G E K F 0 0 0 0 0 1 1 2 0 0 1 1 0 1 1 1 0 0 1 0 0 0 10 0 1124.5502 Q1KMD3;H3BQZ7 Q1KMD3 264 273 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2 0.00064148 95.502 By MS/MS By MS/MS 1 2 1.0158 0.89198 47.286 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87445 0.89198 NaN 1 0 Median 1.5217 1.279 60.051 2 0 Median 18052000 8300800 9751300 0 0 0 0 0 0 0 0 0 0 0 0 14189000 6737300 7451900 3863000 1563600 2299400 38918 3002 40867 206332;206333;206334 209686;209687;209688;209689 209687 4 YGGQPLFSEKFPTLWSGAR DTYTSDLHFQVSKDRYGGQPLFSEKFPTLW PLFSEKFPTLWSGARSTYGVTKGKVCFEAK R Y G A R S 1 1 0 0 0 1 1 3 0 0 2 1 0 2 2 2 1 1 1 0 0 0 19 1 2140.0742 Q1KMD3;H3BQZ7 Q1KMD3 264 282 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 3 4.6648E-07 58.672 By MS/MS By matching 2 1 0.70384 0.73625 13.369 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72144 0.7715 6.6134 2 0 Median 0.70384 0.62105 NaN 1 0 Median 14801000 8689100 6112100 0 0 0 0 0 0 0 0 0 0 0 0 14447000 8486300 5961000 353930 202800 151130 38919 3002 40868 206335;206336;206337 209690;209691;209692;209693 209690 4 YGGQPVPNFPSK TYIPLCPGAYTVTIKYGGQPVPNFPSKLQV TIKYGGQPVPNFPSKLQVEPAVDTSGVQCY K Y G S K L 0 0 1 0 0 1 0 2 0 0 0 1 0 1 3 1 0 0 1 1 0 0 12 0 1289.6404 P21333;Q60FE5;A0A087WWY3 P21333 1235 1246 FLNA Filamin-A no no 2 3.2601E-06 125.75 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 4 1 1 0.66393 0.61264 13.519 9 Median 0.70055 0.68582 0.88535 2 0 Median 0.66785 0.59596 5.9314 2 0 Median 0.72882 0.8024 NaN 1 0 Median 0.6299 0.59946 8.7944 3 1 Median NaN NaN NaN 0 0 Median 0.62579 0.53617 NaN 1 0 Median 295690000 174700000 121000000 95274000 54586000 40688000 161910000 97063000 64842000 23457000 14052000 9405200 11899000 7155600 4743200 0 0 0 3158300 1841300 1317000 38920 2088;3120 40869 206338;206339;206340;206341;206342;206343;206344;206345;206346;206347;206348 209694;209695;209696;209697;209698;209699;209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713;209714;209715;209716;209717;209718 209695 25 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR VREKIERDKAERAKKYGGSVGSQPPPVAPE GPVPSSPSQEPPTKREYDQCRIQVRLPDGT K Y G K R E 1 1 0 0 0 2 2 4 0 0 0 1 0 0 10 5 1 0 1 3 0 0 31 1 3082.536 E9PJ81;E9PRQ7;Q04323;A0A087WTZ5;E9PS08 E9PJ81 179 209 UBXN1 UBX domain-containing protein 1 yes no 3 0.00073418 32.675 By MS/MS 1 0.21374 0.22902 NaN 1 Median 0.21374 0.22902 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10824000 9645100 1178400 10824000 9645100 1178400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38921 942 40870 206349 209719 209719 1 YGGTFQNVSVQLPITLNK VSDFTEAPVLNIQFRYGGTFQNVSVQLPIT TFQNVSVQLPITLNKFFQPTEMASQDFFQR R Y G N K F 0 0 2 0 0 2 0 2 0 1 2 1 0 1 1 1 2 0 1 2 0 0 18 0 1978.0524 O94973;A0A0G2JS82 O94973 808 825 AP2A2 AP-2 complex subunit alpha-2 yes no 2 0.00028408 41.54 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.0145 0.99165 11.836 4 Median 0.82713 0.82117 NaN 1 0 Median 1.1207 0.99329 NaN 1 0 Median 0.91832 0.99001 NaN 1 0 Median 1.2255 1.0887 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6775600 3496300 3279400 2375100 1259400 1115700 1795700 815010 980710 2437500 1350100 1087300 167350 71700 95651 0 0 0 0 0 0 38922 1741 40871 206350;206351;206352;206353 209720;209721;209722;209723 209720 4 YGIENVK PIGTVGLTEDEAIHKYGIENVKTYSTSFTP TEDEAIHKYGIENVKTYSTSFTPMYHAVTK K Y G V K T 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 821.42832 P00390 P00390 435 441 GSR Glutathione reductase, mitochondrial yes yes 2 0.039743 57.811 By MS/MS By MS/MS 1 1 1.214 1.0983 3.416 2 Median 1.1708 1.1252 NaN 1 0 Median 1.2587 1.0721 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7110900 2930700 4180300 2632300 1126800 1505600 4478600 1803900 2674700 0 0 0 0 0 0 0 0 0 0 0 0 38923 1817 40872 206354;206355 209724;209725;209726 209726 3 YGIKPEWMMIHR NKDPKFAEMEERFYRYGIKPEWMMIHRILN FYRYGIKPEWMMIHRILNHSVDKKGHVHYL R Y G H R I 0 1 0 0 0 0 1 1 1 2 0 1 2 0 1 0 0 1 1 0 0 0 12 1 1559.7741 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3;Q8TDI0;F2Z2R5 Q14839 615 626 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 3 0.00010193 82.171 By MS/MS By matching By MS/MS By matching 2 2 1 1 1.1448 1.1698 13.337 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90347 1.0528 15.9 2 0 Median 1.4038 1.3312 8.2369 2 0 Median 1.0259 1.1615 NaN 1 0 Median 1.2774 1.13 NaN 1 0 Median 35191000 17796000 17395000 0 0 0 0 0 0 28553000 14205000 14348000 475660 217000 258660 5904600 3269000 2635700 257900 104550 153350 38924 246;3471 40873 206356;206357;206358;206359;206360;206361 209727;209728;209729;209730 209728 4 YGINTDPPK DTKKKEEQLKLLKEKYGINTDPPK______ KLLKEKYGINTDPPK_______________ K Y G P K - 0 0 1 1 0 0 0 1 0 1 0 1 0 0 2 0 1 0 1 0 0 0 9 0 1003.4975 Q9Y3B4 Q9Y3B4 117 125 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.001354 82.452 By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 0.82582 0.72739 25.133 6 Median NaN NaN NaN 0 0 Median 0.93166 0.76764 NaN 1 0 Median 1.0149 0.97422 40.282 2 0 Median 0.89414 0.72208 NaN 1 0 Median 0.62745 0.66734 0.93527 2 0 Median NaN NaN NaN 0 0 Median 27326000 13902000 13425000 0 0 0 8436900 4162700 4274100 13012000 6597000 6415200 4371600 2233900 2137700 1505500 907830 597660 0 0 0 38925 4415 40874 206362;206363;206364;206365;206366;206367 209731;209732;209733;209734;209735;209736 209731 6 YGINTTDIFQTVDLWEGK KQMEQISQFLQAAERYGINTTDIFQTVDLW NTTDIFQTVDLWEGKNMACVQRTLMNLGGL R Y G G K N 0 0 1 2 0 1 1 2 0 2 1 1 0 1 0 0 3 1 1 1 0 0 18 0 2099.0211 P37802;X6RJP6 P37802 103 120 TAGLN2 Transgelin-2 yes no 2 0.003404 30.438 By matching By MS/MS 1 2 1.1069 1.0054 5.5595 3 Median 1.0354 1.0054 NaN 1 0 Median 1.1473 0.98213 7.627 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6076600 2787600 3289100 1053300 454690 598580 5023400 2332900 2690500 0 0 0 0 0 0 0 0 0 0 0 0 38926 2269 40875 206368;206369;206370 209737 209737 1 YGIQMPAFSK FTEEEINNMKTELEKYGIQMPAFSKIGGIL TELEKYGIQMPAFSKIGGILANELSVDEAA K Y G S K I 1 0 0 0 0 1 0 1 0 1 0 1 1 1 1 1 0 0 1 0 0 0 10 0 1140.5638 P46940;A0A0J9YXZ5 P46940 192 201 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.00041856 75.378 By MS/MS By matching 3 2 0.98435 0.93557 9.8309 5 Median 0.97376 0.93557 9.8304 3 0 Median 1.0736 0.96116 12.113 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33592000 16819000 16773000 29820000 15068000 14751000 3772100 1750700 2021400 0 0 0 0 0 0 0 0 0 0 0 0 38927 2350 40876 206371;206372;206373;206374;206375 209738;209739;209740 209739 3 YGISGELAMRPLASLSGGQK FPGRPEEEYRHQLGRYGISGELAMRPLASL ELAMRPLASLSGGQKSRVAFAQMTMPCPNF R Y G Q K S 2 1 0 0 0 1 1 4 0 1 3 1 1 0 1 3 0 0 1 0 0 0 20 1 2034.0568 Q9NUQ8 Q9NUQ8 597 616 ABCF3 ATP-binding cassette sub-family F member 3 yes yes 3 0.061191 17.296 By MS/MS 1 1.2064 1.2806 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2064 1.2806 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3689200 1633400 2055700 0 0 0 0 0 0 3689200 1633400 2055700 0 0 0 0 0 0 0 0 0 38928 4119 40877 206376 209741 209741 1 YGISNEKPEVK PWMRKTEYISTEFNRYGISNEKPEVKIGVS EFNRYGISNEKPEVKIGVSVKQQFTEEEIY R Y G V K I 0 0 1 0 0 0 2 1 0 1 0 2 0 0 1 1 0 0 1 1 0 0 11 1 1262.6507 Q8N7H5;B4DGJ5 Q8N7H5 144 154 PAF1 RNA polymerase II-associated factor 1 homolog yes no 3 0.011565 29.299 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.64019 0.6662 26.467 4 Median 0.57464 0.55136 NaN 1 0 Median 0.53007 0.49756 NaN 1 0 Median 0.71322 0.80497 NaN 1 0 Median 0.91069 0.84089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7473400 4329000 3144300 692420 380360 312060 1628200 1106000 522200 4045700 2253200 1792500 1107000 589420 517620 0 0 0 0 0 0 38929 3393 40878 206377;206378;206379;206380 209742;209743;209744;209745 209743 4 YGISSMIQSQEKPDR PREIMDAAEDYAKERYGISSMIQSQEKPDR YGISSMIQSQEKPDRVLVRVRDLTIQKADE R Y G D R V 0 1 0 1 0 2 1 1 0 2 0 1 1 0 1 3 0 0 1 0 0 0 15 1 1737.8356 P14868;H7C278 P14868 29 43 DARS Aspartate--tRNA ligase, cytoplasmic yes no 3 3.22E-11 109.84 By MS/MS By matching By MS/MS By MS/MS 5 2 1 2 1.0245 1.0013 38.915 10 Median 0.69392 0.70801 56.319 5 0 Median 1.2109 1.1212 15.911 2 0 Median 0.89259 1.0008 NaN 1 0 Median 1.2176 1.1426 7.0758 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67855000 30699000 37157000 42402000 18651000 23751000 5851100 2204700 3646300 9896300 5360600 4535700 9705800 4481900 5224000 0 0 0 0 0 0 38930 2012 40879;40880 206381;206382;206383;206384;206385;206386;206387;206388;206389;206390 209746;209747;209748;209749;209750;209751 209748 801 6 YGIVDYMIEQSGPPSK FRKGRPYDYNGPREKYGIVDYMIEQSGPPS GIVDYMIEQSGPPSKEILTLKQVQEFLKDG K Y G S K E 0 0 0 1 0 1 1 2 0 2 0 1 1 0 2 2 0 0 2 1 0 0 16 0 1782.8498 P13667;A0A499FI48 P13667 273 288 PDIA4 Protein disulfide-isomerase A4 yes no 2 4.8589E-10 119.45 By MS/MS By MS/MS By MS/MS 1 1 1 0.78473 0.72199 19.163 3 Median 0.78473 0.70694 NaN 1 0 Median 1.1308 0.99514 NaN 1 0 Median 0.70258 0.72199 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26411000 14247000 12164000 15258000 8392300 6865400 2968200 1420500 1547700 8185600 4434400 3751100 0 0 0 0 0 0 0 0 0 38931 1993 40881 206391;206392;206393 209752;209753;209754;209755 209755 4 YGIYAVENEHMNR STPLTATPGGRGDMKYGIYAVENEHMNRLQ MKYGIYAVENEHMNRLQSQRAMLLQGTESL K Y G N R L 1 1 2 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 2 1 0 0 13 0 1594.7198 Q9UEU0;H0YJL5;H0YJJ5 Q9UEU0 112 124 VTI1B Vesicle transport through interaction with t-SNAREs homolog 1B yes no 3 0.014204 24.929 By matching By MS/MS 2 1 0.76539 0.72326 5.4687 3 Plateau 0.71664 0.68587 7.5064 2 0 Median 0.82675 0.70169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10268000 5602600 4665500 8154400 4551700 3602600 2113700 1050900 1062900 0 0 0 0 0 0 0 0 0 0 0 0 38932 4256 40882 206394;206395;206396 209756 209756 1 YGKDATNVGDEGGFAPNILENK GAEVYHNLKNVIKEKYGKDATNVGDEGGFA VGDEGGFAPNILENKEGLELLKTAIGKAGY K Y G N K E 2 0 3 2 0 0 2 4 0 1 1 2 0 1 1 0 1 0 1 1 0 0 22 1 2308.0972 P06733;A0A2R8Y6G6 P06733 200 221 ENO1 Alpha-enolase yes no 3 3.5183E-09 51.526 By MS/MS By MS/MS 1 1 0.85697 0.85745 15.312 2 Median 0.80602 0.76946 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91116 0.95549 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18646000 10283000 8362300 12717000 7358900 5358100 0 0 0 5928700 2924600 3004200 0 0 0 0 0 0 0 0 0 38933 1873 40883 206397;206398 209757;209758 209757 2 YGKIETIEVMEDR KEDTEEYNLRDYFEKYGKIETIEVMEDRQS EKYGKIETIEVMEDRQSGKKRGFAFVTFDD K Y G D R Q 0 1 0 1 0 0 3 1 0 2 0 1 1 0 0 0 1 0 1 1 0 0 13 1 1581.7709 P51991 P51991 149 161 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 1.3978E-07 125.22 By MS/MS By MS/MS By MS/MS By matching 4 4 13 4 1.099 1.1598 10.394 24 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0026 1.1411 6.6918 4 1 Median 1.3514 1.17 10.882 4 0 Median 1.0818 1.1772 7.6187 12 2 Median 1.2483 1.0652 15.135 4 0 Median 290440000 137740000 152700000 0 0 0 0 0 0 30167000 13744000 16423000 27362000 11142000 16220000 227500000 110260000 117240000 5412900 2592300 2820600 38934 2446 40884;40885 206399;206400;206401;206402;206403;206404;206405;206406;206407;206408;206409;206410;206411;206412;206413;206414;206415;206416;206417;206418;206419;206420;206421;206422;206423 209759;209760;209761;209762;209763;209764;209765;209766;209767;209768;209769;209770;209771;209772;209773;209774;209775;209776;209777;209778;209779;209780;209781;209782 209773 1141 24 YGLAAAVFTR FKKIEEVVERANNTRYGLAAAVFTRDLDKA ANNTRYGLAAAVFTRDLDKAMYFTQALQAG R Y G T R D 3 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 1 0 0 10 0 1067.5764 P30837 P30837 442 451 ALDH1B1 Aldehyde dehydrogenase X, mitochondrial yes yes 2 0.00041856 75.378 By MS/MS By matching By matching By matching 1 1 3 2 1.385 1.2582 23.677 7 Median 1.1794 1.1408 NaN 1 0 Median 1.4625 1.2444 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1806 1.2582 30.777 3 0 Median 1.8457 1.5713 6.1607 2 0 Median 15814000 7026400 8787300 7580300 3424200 4156100 4002500 1682000 2320500 0 0 0 0 0 0 3444000 1654600 1789400 786910 265620 521300 38935 2199 40886 206424;206425;206426;206427;206428;206429;206430 209783 209783 1 YGLFPANYVELR EMIDDGWWRGVCKGRYGLFPANYVELRQ__ KGRYGLFPANYVELRQ______________ R Y G L R Q 1 1 1 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 2 1 0 0 12 0 1440.7402 Q14247 Q14247 538 549 CTTN Src substrate cortactin yes yes 2 0.013306 54.982 By MS/MS By matching By matching 4 1 2 1.0093 0.89941 24.714 7 Median 0.97791 0.93368 32.326 4 1 Median 1.0093 0.87429 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.95295 0.80682 15.363 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8673900 4714000 3960000 7469300 4066700 3402600 1062100 562840 499260 0 0 0 142570 84478 58090 0 0 0 0 0 0 38936 2868 40887 206431;206432;206433;206434;206435;206436;206437 209784;209785 209784 2 YGLFPANYVELRQ EMIDDGWWRGVCKGRYGLFPANYVELRQ__ GRYGLFPANYVELRQ_______________ R Y G R Q - 1 1 1 0 0 1 1 1 0 0 2 0 0 1 1 0 0 0 2 1 0 0 13 1 1568.7987 Q14247 Q14247 538 550 CTTN Src substrate cortactin yes yes 2 0.0013071 62.303 By MS/MS By matching 3 1 1.0873 0.91699 28.212 3 Median 0.87184 0.83294 39.117 2 1 Median 1.0873 0.91699 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8401800 4627100 3774700 8167100 4504600 3662500 234690 122430 112270 0 0 0 0 0 0 0 0 0 0 0 0 38937 2868 40888 206438;206439;206440;206441 209786;209787;209788;209789 209787 4 YGLIFHSTFIGR KALFRALKTRGNTPKYGLIFHSTFIGRAAA TPKYGLIFHSTFIGRAAAKNKGRISRYLAN K Y G G R A 0 1 0 0 0 0 0 2 1 2 1 0 0 2 0 1 1 0 1 0 0 0 12 0 1409.7456 O00567;A0A494C128;H0YDU4;H0Y653 O00567 348 359 NOP56 Nucleolar protein 56 yes no 2;3 0.0002222 60.49 By matching By MS/MS By matching By MS/MS By matching 1 3 1 5 2 0.93923 0.95667 43.085 12 Median NaN NaN NaN 0 0 Median 1.6643 1.4376 NaN 1 0 Median 1.5431 1.5134 33.114 3 0 Median 0.40561 0.35226 NaN 1 0 Median 0.88738 0.94783 17.671 5 0 Median 0.91086 0.77647 3.665 2 0 Median 55071000 24509000 30562000 0 0 0 1692300 654400 1037900 24615000 9665800 14950000 94855 57120 37735 27956000 13786000 14170000 711690 345170 366520 38938 1472 40889 206442;206443;206444;206445;206446;206447;206448;206449;206450;206451;206452;206453 209790;209791;209792;209793;209794;209795;209796 209790 7 YGLIGLNGIGK ELLSDTKLELNSGRRYGLIGLNGIGKSMLL SGRRYGLIGLNGIGKSMLLSAIGKREVPIP R Y G G K S 0 0 1 0 0 0 0 4 0 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1103.6339 Q9UG63;C9JHK9;C9JZV3 Q9UG63 114 124 ABCF2 ATP-binding cassette sub-family F member 2 yes no 2 0.070326 41.429 By MS/MS 1 1.5198 1.6159 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5198 1.6159 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2847400 1291600 1555800 0 0 0 0 0 0 2847400 1291600 1555800 0 0 0 0 0 0 0 0 0 38939 4262 40890 206454 209797 209797 1 YGLIPGASNDFK DFKYGLIPGTSNDFKYGLIPGASNDFKYGL DFKYGLIPGASNDFKYGLLPESWPKQETWE K Y G F K Y 1 0 1 1 0 0 0 2 0 1 1 1 0 1 1 1 0 0 1 0 0 0 12 0 1280.6401 Q96DT7 Q96DT7 685 696 ZBTB10 Zinc finger and BTB domain-containing protein 10 yes yes 2 0.031417 27.742 By MS/MS By matching 1 1 1.3249 1.3311 29.444 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.99797 1.0809 NaN 1 0 Median 1.7589 1.6392 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3489600 1564200 1925400 0 0 0 0 0 0 3377900 1523800 1854100 111750 40399 71354 0 0 0 0 0 0 38940 3628 40891 206455;206456 209798;209799 209799 2 YGLIYHASLVGQTSPK KALFRALKSRRDTPKYGLIYHASLVGQTSP GLIYHASLVGQTSPKHKGKISRMLAAKTVL K Y G P K H 1 0 0 0 0 1 0 2 1 1 2 1 0 0 1 2 1 0 2 1 0 0 16 0 1732.9148 Q9Y2X3 Q9Y2X3 338 353 NOP58 Nucleolar protein 58 yes yes 2;3 2.9667E-10 142.1 By matching By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 3 6 1 1.0209 0.93729 10.47 14 Median 1.0531 1.0082 NaN 1 0 Median 1.3721 1.1828 NaN 1 0 Median 1.0117 0.98621 12.931 2 1 Median 1.0973 0.93521 10.221 3 0 Median 0.90329 0.88396 6.8541 6 1 Median 1.2619 1.0538 NaN 1 0 Median 259560000 133110000 126450000 4976000 2928300 2047700 2642200 1319600 1322600 68091000 33607000 34484000 4575200 2258200 2317000 178730000 92726000 86004000 548330 270140 278200 38941 4396 40892 206457;206458;206459;206460;206461;206462;206463;206464;206465;206466;206467;206468;206469;206470 209800;209801;209802;209803;209804;209805;209806;209807;209808;209809;209810;209811;209812;209813;209814;209815;209816 209803 17 YGLLFER IASLPFQVANVWPTKYGLLFERSASSHEVP VANVWPTKYGLLFERSASSHEVPPGSPREP K Y G E R S 0 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 896.4756 Q9H1A4 Q9H1A4 185 191 ANAPC1 Anaphase-promoting complex subunit 1 yes yes 2 0.040883 57.281 By MS/MS 1 1.0591 1.1727 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0591 1.1727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3669300 1834000 1835300 0 0 0 0 0 0 3669300 1834000 1835300 0 0 0 0 0 0 0 0 0 38942 3933 40893 206471 209817 209817 1 YGLLVGGAASHR AGTRKTTPGFRLVEKYGLLVGGAASHRYDL VEKYGLLVGGAASHRYDLGGLVMVKDNHVV K Y G H R Y 2 1 0 0 0 0 0 3 1 0 2 0 0 0 0 1 0 0 1 1 0 0 12 0 1199.6411 Q15274;C9JCJ5 Q15274 150 161 QPRT Nicotinate-nucleotide pyrophosphorylase [carboxylating] yes no 2;3 4.3706E-08 118.9 By MS/MS By MS/MS 2 1 1.5068 1.3292 26.015 2 Median 1.182 1.1058 NaN 1 0 Median 1.9209 1.5976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29457000 11507000 17949000 21912000 9329200 12582000 7545100 2178200 5367000 0 0 0 0 0 0 0 0 0 0 0 0 38943 2936 40894 206472;206473;206474 209818;209819;209820;209821;209822 209820 5 YGLNMCR RSCRVCSNRHGLIRKYGLNMCRQCFRQYAK NRHGLIRKYGLNMCRQCFRQYAKDIGFIKL K Y G C R Q 0 1 1 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 7 0 912.39459 P62273;A0A087WTT6;A0A2R8Y851;A0A2R8Y6P7 P62273 34 40 RPS29 40S ribosomal protein S29 yes no 2 0.0015613 130.84 By MS/MS By MS/MS By matching By MS/MS 2 1 1 1 1.2795 1.2127 14.121 5 Median 1.2851 1.2302 2.0365 2 0 Median 1.2071 0.97632 NaN 1 0 Median 1.1868 1.1864 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4185 1.4488 NaN 1 0 Median NaN NaN NaN 0 0 Median 23241000 10654000 12587000 8390100 3868700 4521400 8983200 4146000 4837200 2606100 1088200 1517900 0 0 0 3262000 1551400 1710500 0 0 0 38944 2579 40895 206475;206476;206477;206478;206479 209823;209824;209825;209826;209827 209823 5 YGLPVNFQAMLLQPNKK IHVKALRVFVESVLRYGLPVNFQAMLLQPN LPVNFQAMLLQPNKKTLKKLREVLHELYKH R Y G K K T 1 0 2 0 0 2 0 1 0 0 3 2 1 1 2 0 0 0 1 1 0 0 17 1 1960.0604 P21283;E7EV59 P21283 310 326 ATP6V1C1 V-type proton ATPase subunit C 1 yes no 3 0.04916 9.6577 By MS/MS By matching 1 1 0.86184 0.87013 26.915 2 Median 0.769 0.71933 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96588 1.0525 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4410700 2297900 2112700 3022500 1595800 1426700 0 0 0 1388200 702160 686010 0 0 0 0 0 0 0 0 0 38945 2087 40896 206480;206481 209828 209828 1 YGLSAHPVAPQMFGYAGK RTIPTDKHVDLLINKYGLSAHPVAPQMFGY SAHPVAPQMFGYAGKEHMEKYGTKIEHFAK K Y G G K E 3 0 0 0 0 1 0 3 1 0 1 1 1 1 2 1 0 0 2 1 0 0 18 0 1892.9243 P22307;H0YCB0;E9PLD1 P22307 151 168 SCP2 Non-specific lipid-transfer protein yes no 3 0.021616 16.123 By MS/MS By matching 1 1 0.60358 0.56306 3.7656 2 Median 0.60511 0.57825 NaN 1 0 Median 0.60206 0.54827 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3674400 2372900 1301400 3205300 1957900 1247500 469020 415050 53972 0 0 0 0 0 0 0 0 0 0 0 0 38946 2099 40897 206482;206483 209829 209829 1 YGLSPGPVTESTRPVYLK PQQLSDEELFSQLRRYGLSPGPVTESTRPV SPGPVTESTRPVYLKKLKKLREEEQQQHRS R Y G L K K 0 1 0 0 0 0 1 2 0 0 2 1 0 0 3 2 2 0 2 2 0 0 18 1 1963.0415 Q9Y2U8 Q9Y2U8 24 41 LEMD3 Inner nuclear membrane protein Man1 yes yes 3 0.0008886 32.181 By matching By MS/MS 1 1 0.65306 0.68139 18.784 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.5267 0.59664 NaN 1 0 Median 0.80975 0.77818 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18356000 11406000 6949100 0 0 0 0 0 0 15819000 9900600 5918500 2536600 1505900 1030600 0 0 0 0 0 0 38947 4392 40898 206484;206485 209830;209831 209830 2 YGLSSMQGWR KMEKHNAQGQGNGLRYGLSSMQGWRVEMED GNGLRYGLSSMQGWRVEMEDAHTAVIGLPS R Y G W R V 0 1 0 0 0 1 0 2 0 0 1 0 1 0 0 2 0 1 1 0 0 0 10 0 1183.5444 P35813 P35813 24 33 PPM1A Protein phosphatase 1A no no 2 0.002391 60.436 By MS/MS 1 1.1773 1.1728 NaN 1 Median 1.1773 1.1728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10490000 4600600 5889100 10490000 4600600 5889100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38948 2251 40899 206486 209832 209832 1 YGLTGPWIK SSTFLGVIPQFVQMKYGLTGPWIKRLLPVI QFVQMKYGLTGPWIKRLLPVIFLVQASGMN K Y G I K R 0 0 0 0 0 0 0 2 0 1 1 1 0 0 1 0 1 1 1 0 0 0 9 0 1033.5597 Q6P4A7;B1AMV7 Q6P4A7 189 197 SFXN4 Sideroflexin-4 yes no 2 0.013814 45.081 By MS/MS By matching 1 1 1.1391 1.0295 14.026 2 Median 0.96719 0.93233 NaN 1 0 Median 1.3415 1.1369 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4653300 2219100 2434200 4318500 2073300 2245200 334790 145770 189020 0 0 0 0 0 0 0 0 0 0 0 0 38949 3158 40900 206487;206488 209833 209833 1 YGLVFFR GKVTSVQIHGTSEERYGLVFFRQQEDQEKA IHGTSEERYGLVFFRQQEDQEKALTASKGK R Y G F R Q 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 7 0 900.48577 Q96T58;H0Y5U7;F6WRY4 Q96T58 378 384 SPEN Msx2-interacting protein yes no 2 0.028141 51.036 By matching By matching By MS/MS By matching 1 1 3 1 1.16 1.1505 10.998 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1087 1.237 NaN 1 0 Median 1.2307 1.067 NaN 1 0 Median 1.2479 1.3198 9.0077 3 0 Plateau 1.1899 0.97556 NaN 1 0 Median 4387200 1970600 2416700 0 0 0 0 0 0 300800 150940 149860 108130 47172 60955 3794000 1683500 2110500 184310 88998 95309 38950 3741 40901 206489;206490;206491;206492;206493;206494 209834;209835 209835 2 YGLVGLEPTK AHSSLALFRDDMGVKYGLVGLEPTKVALNV DMGVKYGLVGLEPTKVALNVERFREWAVVL K Y G T K V 0 0 0 0 0 0 1 2 0 0 2 1 0 0 1 0 1 0 1 1 0 0 10 0 1075.5914 Q8WW59 Q8WW59 54 63 SPRYD4 SPRY domain-containing protein 4 yes yes 2 0.012347 41.448 By MS/MS By matching 1 1 1.0488 0.95033 14.391 2 Median 0.90823 0.85839 NaN 1 0 Median 1.2112 1.0521 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3564000 1944200 1619800 2310900 1375800 935090 1253100 568410 684690 0 0 0 0 0 0 0 0 0 0 0 0 38951 3506 40902 206495;206496 209836 209836 1 YGMGTSVER ALWKLPCIFICENNRYGMGTSVERAAASTD ICENNRYGMGTSVERAAASTDYYKRGDFIP R Y G E R A 0 1 0 0 0 0 1 2 0 0 0 0 1 0 0 1 1 0 1 1 0 0 9 0 998.44913 P08559 P08559 227 235 PDHA1 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial yes yes 2 0.00025191 139.88 By MS/MS By MS/MS 1 1 1.096 1.0206 1.6951 2 Median 1.0152 1.0085 NaN 1 0 Median 1.1833 1.0329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12141000 5643500 6497500 4429100 2158800 2270300 7711900 3484700 4227200 0 0 0 0 0 0 0 0 0 0 0 0 38952 1902 40903 206497;206498 209837;209838;209839 209839 3 YGMHQNTLR LHKKTFYYLEQLILKYGMHQNTLRIKEIHD EQLILKYGMHQNTLRIKEIHDGLDFYYSSK K Y G L R I 0 1 1 0 0 1 0 1 1 0 1 0 1 0 0 0 1 0 1 0 0 0 9 0 1118.5291 C9JA08;Q96D46;C9J0B9 C9JA08 179 187 NMD3 60S ribosomal export protein NMD3 yes no 2 0.027065 51.346 By MS/MS 1 1.5586 1.3591 NaN 1 Median NaN NaN NaN 0 0 Median 1.5586 1.3591 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1013700 355980 657680 0 0 0 1013700 355980 657680 0 0 0 0 0 0 0 0 0 0 0 0 38953 683 40904 206499 209840 209840 1 YGMNPHQTPAQLYTLQPK FRKQYSKGVSQMPLRYGMNPHQTPAQLYTL NPHQTPAQLYTLQPKLPITVLNGAPGFINL R Y G P K L 1 0 1 0 0 3 0 1 1 0 2 1 1 0 3 0 2 0 2 0 0 0 18 0 2086.0306 P31939;C9JLK0 P31939 208 225 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase yes no 2;3 4.9592E-32 142.91 By MS/MS By matching 3 1 0.72876 0.67896 14.6 4 Median 0.78465 0.73255 10.723 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65551 0.5615 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 140660000 81917000 58740000 139380000 81225000 58157000 0 0 0 0 0 0 1276100 692270 583810 0 0 0 0 0 0 38954 2207 40905;40906 206500;206501;206502;206503 209841;209842;209843;209844 209844 941 4 YGMPPQDAFTTQWLVR FNARQRKAFLNAIMRYGMPPQDAFTTQWLV GMPPQDAFTTQWLVRDLRGKSEKEFKAYVS R Y G V R D 1 1 0 1 0 2 0 1 0 0 1 0 1 1 2 0 2 1 1 1 0 0 16 0 1908.9193 Q14839;F5GWX5;A0A2R8Y425;A0A2R8YFK9;A0A2U3TZM0;A0A2R8Y5J0;A0A2R8Y212;A0A2R8Y521;A0A0C4DGG9;A0A2R8YFD8;A0A2R8YDJ9;A0A2R8YD40;A0A2R8Y8C1;A0A2R8YDW2;A0A2R8Y445;A0A2R8YER1;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y5M9;A0A2R8Y7M9;A0A2R8YE38 Q14839 1431 1446 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes no 2 2.4142E-09 119.76 By MS/MS By MS/MS 4 1 0.83228 0.88938 12.922 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81508 0.88917 14.912 4 0 Median NaN NaN NaN 0 0 Median 0.83228 0.88938 NaN 1 0 Median NaN NaN NaN 0 0 Median 27258000 14146000 13113000 0 0 0 0 0 0 25965000 13468000 12497000 0 0 0 1293300 677460 615790 0 0 0 38955 246 40907;40908 206504;206505;206506;206507;206508 209845;209846;209847;209848;209849;209850;209851;209852;209853;209854;209855 209845 109 11 YGMSPPGSVADKR LLALASKVTLPPHYRYGMSPPGSVADKRKN YRYGMSPPGSVADKRKNPPWIRRRPVVVEP R Y G K R K 1 1 0 1 0 0 0 2 0 0 0 1 1 0 2 2 0 0 1 1 0 0 13 1 1363.6554 Q96A35;X6RJ73;X6RHI2;X6RIR5 Q96A35 21 33 MRPL24 39S ribosomal protein L24, mitochondrial yes no 3 0.026389 24.964 By MS/MS By MS/MS 1 1 0.88806 0.88477 23.185 2 Median 0.71336 0.75098 NaN 1 0 Median 1.1055 1.0424 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2443800 1376600 1067300 1824900 1100900 723980 618970 275680 343290 0 0 0 0 0 0 0 0 0 0 0 0 38956 3593 40909 206509;206510 209856;209857 209856 1 YGNANAWR QITQVYGFYDECQTKYGNANAWRYCTKVFD YDECQTKYGNANAWRYCTKVFDMLTVAALI K Y G W R Y 2 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 8 0 950.43586 O00743 O00743 133 140 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes yes 2 0.0049484 86.086 By MS/MS By MS/MS 1 2 1.4846 1.2567 9.2049 3 Median 1.1207 1.088 NaN 1 0 Median 1.5057 1.2738 1.9102 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4761800 1957800 2804000 1837500 837200 1000300 2924300 1120600 1803700 0 0 0 0 0 0 0 0 0 0 0 0 38957 1476 40910 206511;206512;206513 209858;209859;209860 209858 3 YGNANVWK QITQVYGFYDECLRKYGNANVWKYFTDLFD YDECLRKYGNANVWKYFTDLFDYLPLTALV K Y G W K Y 1 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 8 0 950.46102 P67775;P62714;E7ESG8;E5RHC1;E5RFI3;E5RHP4 P67775 137 144 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase yes no 2 0.0028554 104.11 By matching By MS/MS 2 1 0.95374 0.87996 23.195 3 Median 0.77621 0.72994 26.435 2 0 Median 1.102 0.92595 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25336000 12383000 12953000 13654000 6923900 6730100 11682000 5458800 6223300 0 0 0 0 0 0 0 0 0 0 0 0 38958 2594 40911 206514;206515;206516 209861;209862 209862 2 YGNPWEK IRDGWQVEEADDWLRYGNPWEKSRPEFMLP EEADDWLRYGNPWEKSRPEFMLPVHFYGKV R Y G E K S 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 7 0 892.40792 P06737;E9PK47;P11216;P11217 P06737 186 192 PYGL;PYGB;PYGM Glycogen phosphorylase, liver form;Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form no no 2 0.031276 49.358 By MS/MS 1 1.1579 1.0206 NaN 1 Median NaN NaN NaN 0 0 Median 1.1579 1.0206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2675300 1214300 1461000 0 0 0 2675300 1214300 1461000 0 0 0 0 0 0 0 0 0 0 0 0 38959 1874;1956;1957 40912 206517 209863 209863 1 YGNQLVR QEFYQDDELGKKQFKYGNQLVRLAHREQVA ELGKKQFKYGNQLVRLAHREQVALYVDLDD K Y G V R L 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.45045 P33993 P33993 33 39 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.00097657 133.99 By MS/MS By matching 1 1 1.4546 1.2355 12.695 2 Median NaN NaN NaN 0 0 Median 1.3064 1.1294 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6196 1.3515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14487000 6448000 8039200 0 0 0 14271000 6371000 7900500 0 0 0 215760 76997 138760 0 0 0 0 0 0 38960 2225 40913 206518;206519 209864;209865 209865 2 YGNYFFPGTGDMYEVGAESGR AFYLTDRVMTVSFHKYGNYFFPGTGDMYEV PGTGDMYEVGAESGRYYCLNVPLRDGIDDQ K Y G G R Y 1 1 1 1 0 0 2 5 0 0 0 0 1 2 1 1 1 0 3 1 0 0 21 0 2315.9793 O15379;E7ESJ6 O15379 195 215 HDAC3 Histone deacetylase 3 yes no 2 0.0011267 29.328 By MS/MS 1 0.40128 0.39503 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.40128 0.39503 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 943930 576470 367460 0 0 0 0 0 0 943930 576470 367460 0 0 0 0 0 0 0 0 0 38961 1541 40914 206520 209866 209866 1 YGPADVEDTTGSGATDSK KEKASLPGVKKALGKYGPADVEDTTGSGAT ADVEDTTGSGATDSKDDDDIDLFGSDDEEE K Y G S K D 2 0 0 3 0 0 1 3 0 0 0 1 0 0 1 2 3 0 1 1 0 0 18 0 1769.7592 P24534;C9JZW3 P24534 79 96 EEF1B2 Elongation factor 1-beta yes no 2 9.2336E-08 90.926 By MS/MS By MS/MS 1 2 1.1485 0.96919 8.5838 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.152 1.0822 NaN 1 0 Median 1.1258 0.94114 4.154 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13063000 6587300 6475700 0 0 0 0 0 0 8059000 4202400 3856600 5004000 2384900 2619200 0 0 0 0 0 0 38962 2123 40915 206521;206522;206523 209867;209868;209869;209870;209871 209870 5 YGPDAFFNFPGK HAGKLLSVLKHMPQKYGPDAFFNFPGKSAA PQKYGPDAFFNFPGKSAAAIALPPIAKWPY K Y G G K S 1 0 1 1 0 0 0 2 0 0 0 1 0 3 2 0 0 0 1 0 0 0 12 0 1358.6295 E9PEM5;A0A494C1L5;P50851;A0A494C0R9 E9PEM5 201 212 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 2 0.0012241 55.567 By MS/MS 1 0.80432 0.79893 NaN 1 Median 0.80432 0.79893 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4787700 2604100 2183600 4787700 2604100 2183600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38963 470 40916 206524 209872;209873 209872 2 YGPEGEAVPVAIPEER PPKPPAWAWAEGWTRYGPEGEAVPVAIPEE GPEGEAVPVAIPEERALVFDVEVCLAEGTC R Y G E R A 2 1 0 0 0 0 4 2 0 1 0 0 0 0 3 0 0 0 1 2 0 0 16 0 1711.8417 P54098;H0YD36;A0A1B0GTQ6;A0A0D9SFM1;A0A590UJP1 P54098 178 193 POLG DNA polymerase subunit gamma-1 yes no 2 0.00020686 60.49 By MS/MS 1 1.3688 1.5054 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3688 1.5054 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6949200 3058700 3890500 0 0 0 0 0 0 6949200 3058700 3890500 0 0 0 0 0 0 0 0 0 38964 2479 40917 206525 209874 209874 1 YGPESLSEFTQWR KAQADFVKSAVRDVRYGPESLSEFTQWRVR VRYGPESLSEFTQWRVRMISEELVAASRTQ R Y G W R V 0 1 0 0 0 1 2 1 0 0 1 0 0 1 1 2 1 1 1 0 0 0 13 0 1598.7365 Q9UFC0;H7C5S6;F8WDB4 Q9UFC0 179 191 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes no 2 0.0022747 48.44 By MS/MS By matching 2 1 0.80345 0.89121 64.242 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76082 0.83811 12.335 2 0 Median 0.29969 0.27831 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6035900 3152600 2883300 0 0 0 0 0 0 5856300 3034200 2822100 179580 118410 61177 0 0 0 0 0 0 38965 4258 40918 206526;206527;206528 209875;209876;209877;209878;209879 209877 5 YGPFVADFADK TALSVLGVMVYGIKKYGPFVADFADKLNEQ GIKKYGPFVADFADKLNEQKLAQLEEAKQA K Y G D K L 2 0 0 2 0 0 0 1 0 0 0 1 0 2 1 0 0 0 1 1 0 0 11 0 1228.5764 Q5QNZ2;P24539 Q5QNZ2 55 65 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 2 0.023144 33.961 By MS/MS By matching By matching 1 1 1 1.2776 1.099 15.504 3 Median 0.96183 0.89783 NaN 1 0 Median 1.2789 1.099 NaN 1 0 Median 1.2776 1.2177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13686000 7128100 6558300 12108000 6500600 5607700 325020 148910 176110 1253100 478600 774540 0 0 0 0 0 0 0 0 0 38966 2124 40919 206529;206530;206531 209880;209881 209880 2 YGPFVADFADKLNEQK TALSVLGVMVYGIKKYGPFVADFADKLNEQ GPFVADFADKLNEQKLAQLEEAKQASIQHI K Y G Q K L 2 0 1 2 0 1 1 1 0 0 1 2 0 2 1 0 0 0 1 1 0 0 16 1 1840.8996 Q5QNZ2;P24539 Q5QNZ2 55 70 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes no 3 3.5575E-05 68.978 By MS/MS By matching 1 1 1.0179 0.98177 15.38 2 Median 0.86689 0.8806 NaN 1 0 Median 1.1953 1.0946 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20039000 11138000 8901700 18088000 10315000 7773400 1951300 823050 1128300 0 0 0 0 0 0 0 0 0 0 0 0 38967 2124 40920 206532;206533 209882 209882 1 YGPIADVSIVYDQQSR SLYTTERDLREVFSKYGPIADVSIVYDQQS GPIADVSIVYDQQSRRSRGFAFVYFENVDD K Y G S R R 1 1 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 16 0 1809.8897 P62995 P62995 141 156 TRA2B Transformer-2 protein homolog beta yes yes 2;3 3.2941E-08 133.32 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 2 4 2 10 5 0.97027 0.89882 14.742 23 Median 0.87936 0.88077 NaN 1 0 Median 1.3499 1.1643 41.813 2 0 Median 0.94164 1.0276 17.198 4 0 Median 1.0917 0.93559 0.88025 2 0 Median 0.87623 0.89756 5.391 9 1 Median 1.0522 0.85296 8.9602 5 0 Median 178310000 92832000 85474000 2645400 1450400 1195000 1457300 654930 802420 40562000 21556000 19007000 2892000 1289900 1602100 121420000 63382000 58036000 9331300 4499100 4832200 38968 2614 40921 206534;206535;206536;206537;206538;206539;206540;206541;206542;206543;206544;206545;206546;206547;206548;206549;206550;206551;206552;206553;206554;206555;206556;206557 209883;209884;209885;209886;209887;209888;209889;209890;209891;209892;209893;209894;209895;209896;209897;209898;209899 209889 17 YGPIADVSIVYDQQSRR SLYTTERDLREVFSKYGPIADVSIVYDQQS PIADVSIVYDQQSRRSRGFAFVYFENVDDA K Y G R R S 1 2 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 17 1 1965.9908 P62995 P62995 141 157 TRA2B Transformer-2 protein homolog beta yes yes 3 0.011854 21.233 By MS/MS 2 0.90664 0.97546 0.26432 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90664 0.97546 0.26432 2 0 Median NaN NaN NaN 0 0 Median 23859000 11848000 12012000 0 0 0 0 0 0 0 0 0 0 0 0 23859000 11848000 12012000 0 0 0 38969 2614 40922 206558;206559 209900;209901 209900 2 YGPIVDVYVPLDFYTR ADDTRSEDLRREFGRYGPIVDVYVPLDFYT GPIVDVYVPLDFYTRRPRGFAYVQFEDVRD R Y G T R R 0 1 0 2 0 0 0 1 0 1 1 0 0 1 2 0 1 0 3 3 0 0 16 0 1915.972 Q5JRI1;O75494;Q6IQ42 Q5JRI1 33 48 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 2 0.00013333 53.967 By MS/MS By MS/MS By matching 1 4 1 0.74917 0.72082 8.4276 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81706 0.78606 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69538 0.70934 9.3112 4 0 Median 0.92107 0.70769 NaN 1 0 Median 10144000 5690500 4453000 0 0 0 0 0 0 785480 429230 356240 0 0 0 8725300 4910500 3814900 632740 350820 281920 38970 1679 40923 206560;206561;206562;206563;206564;206565 209902;209903;209904;209905 209903 4 YGPLSGVNVVYDQR SLYTTERDLREVFSRYGPLSGVNVVYDQRT RYGPLSGVNVVYDQRTGRSRGFAFVYFERI R Y G Q R T 0 1 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 2 3 0 0 14 0 1565.7838 Q13595 Q13595 142 155 TRA2A Transformer-2 protein homolog alpha yes yes 2;3 1.213E-08 138.99 By matching By matching By MS/MS By matching By MS/MS By matching 1 1 3 1 10 3 0.98181 0.92873 25.135 19 Median 0.82837 0.83651 NaN 1 0 Median 0.92624 0.79921 NaN 1 0 Median 0.96384 1.0536 26.713 3 2 Median 0.98181 0.82703 NaN 1 0 Median 0.95904 0.97113 32.357 10 1 Median 1.1224 0.93473 3.0221 3 0 Plateau 229360000 124480000 104880000 2126500 1221700 904820 1506800 777030 729810 52501000 28011000 24490000 241540 111030 130510 166440000 91241000 75200000 6541700 3120400 3421300 38971 2828 40924 206566;206567;206568;206569;206570;206571;206572;206573;206574;206575;206576;206577;206578;206579;206580;206581;206582;206583;206584 209906;209907;209908;209909;209910;209911;209912;209913;209914;209915;209916;209917;209918;209919;209920;209921;209922;209923;209924;209925;209926;209927;209928;209929 209929 24 YGPMEEPLVIEK FTKFLIDKNGCVVKRYGPMEEPLVIEKDLP VKRYGPMEEPLVIEKDLPH___________ R Y G E K D 0 0 0 0 0 0 3 1 0 1 1 1 1 0 2 0 0 0 1 1 0 0 12 0 1403.7007 K7ERP4;A0A087X2I2;A0A087WT12;P36969 K7ERP4 140 151 GPX4 Glutathione peroxidase;Phospholipid hydroperoxide glutathione peroxidase, mitochondrial yes no 2 0.0061269 66.19 By MS/MS 2 0.88918 0.83881 NaN 1 Median 0.88918 0.83881 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14349000 7385000 6963900 14349000 7385000 6963900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38972 12 40925 206585;206586 209930;209931 209931 2 YGPPPSYPNLK NAHKVPPPWLIAMQRYGPPPSYPNLKIPGL AMQRYGPPPSYPNLKIPGLNSPIPESCSFG R Y G L K I 0 0 1 0 0 0 0 1 0 0 1 1 0 0 4 1 0 0 2 0 0 0 11 0 1231.6237 Q13435;E9PPJ0;H0YEX5 Q13435 639 649 SF3B2 Splicing factor 3B subunit 2 yes no 2 0.0014595 58.916 By MS/MS By MS/MS By MS/MS 1 1 1 0.62551 0.61201 11.366 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57443 0.61201 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.62714 0.63789 NaN 1 1 Median 0.62551 0.51486 NaN 1 0 Median 48141000 30063000 18078000 0 0 0 0 0 0 24235000 15189000 9045900 0 0 0 20799000 12935000 7863900 3107400 1939300 1168000 38973 2817 40926 206587;206588;206589 209932;209933;209934;209935;209936 209932 5 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK RMGPPVGGHRRGPSRYGPQYGHPPPPPPPP ADSPVLMVYGLDQSKMNCDRVFNVFCLYGN R Y G S K M 1 0 0 2 0 2 1 4 2 0 2 1 1 0 11 2 0 0 4 2 0 0 35 0 3783.8032 A0A3B3ITJ4;M0QXS5;P14866 P14866 359 393 HNRNPL Heterogeneous nuclear ribonucleoprotein L no no 4 2.2867E-42 94.642 By MS/MS By matching 4 1 0.15912 0.15223 47.324 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2161 0.22446 46.684 4 2 Median 0.14777 0.12967 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 309190000 276470000 32722000 0 0 0 0 0 0 308310000 275740000 32573000 875550 726000 149540 0 0 0 0 0 0 38974 2011;436 40927;40928 206590;206591;206592;206593;206594 209937;209938;209939;209940 209940 195 4 YGPSLMPGGNK LFVGSGVSGGEEGARYGPSLMPGGNKEAWP EGARYGPSLMPGGNKEAWPHIKTIFQGIAA R Y G N K E 0 0 1 0 0 0 0 3 0 0 1 1 1 0 2 1 0 0 1 0 0 0 11 0 1119.5383 P52209;K7EMN2;K7EM49;K7EPF6 P52209 137 147 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes no 2 0.00015969 81.642 By MS/MS By MS/MS By matching 1 1 1 1.1152 0.9498 14.77 3 Median 0.90205 0.83519 NaN 1 0 Median 1.1152 0.9498 NaN 1 0 Median 1.1321 1.1213 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21199000 10339000 10859000 13370000 6860500 6509800 4535600 2154100 2381500 3293000 1324900 1968100 0 0 0 0 0 0 0 0 0 38975 2447 40929 206595;206596;206597 209941;209942;209943;209944 209942 4 YGQFSGLNPGGR CSFQILKPADKNKGKYGQFSGLNPGGRPIT KGKYGQFSGLNPGGRPITPPRNSAKAKK__ K Y G G R P 0 1 1 0 0 1 0 4 0 0 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1251.5996 P62136 P62136 306 317 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 4.8053E-06 102.07 By matching By MS/MS By MS/MS 1 1 1 1.1231 1.0924 36.648 3 Median NaN NaN NaN 0 0 Median 2.2292 1.8608 NaN 1 0 Median 1.1231 1.0924 NaN 1 0 Median 1.0698 0.92186 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26552000 13640000 12912000 0 0 0 4118900 1866900 2252000 19179000 10179000 8999400 3254200 1594100 1660200 0 0 0 0 0 0 38976 2569 40930 206598;206599;206600 209945;209946;209947;209948 209945 4 YGQFSGLNPGGRPITPPR CSFQILKPADKNKGKYGQFSGLNPGGRPIT FSGLNPGGRPITPPRNSAKAKK________ K Y G P R N 0 2 1 0 0 1 0 4 0 1 1 0 0 1 4 1 1 0 1 0 0 0 18 1 1912.9908 P62136 P62136 306 323 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 3 6.6677E-07 82.259 By MS/MS By MS/MS By MS/MS 2 1 1 0.63367 0.63996 13.883 4 Median 0.59622 0.63456 21.789 2 0 Median NaN NaN NaN 0 0 Median 0.57073 0.5957 NaN 1 0 Median 0.73674 0.68752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 159410000 101430000 57978000 76108000 50036000 26072000 0 0 0 79043000 49112000 29931000 4255200 2280100 1975200 0 0 0 0 0 0 38977 2569 40931 206601;206602;206603;206604 209949;209950;209951;209952;209953;209954;209955;209956;209957 209954 9 YGQHPNIITLK KSKRDPTEEIEILLRYGQHPNIITLKDVYD ILLRYGQHPNIITLKDVYDDGKYVYVVTEL R Y G L K D 0 0 1 0 0 1 0 1 1 2 1 1 0 0 1 0 1 0 1 0 0 0 11 0 1282.7034 E9PGT3;Q15418;B7Z3B5;F2Z2J1;Q15349;Q5SVM6;B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603;Q9UK32 B1AXG1 441 451 RPS6KA1;RPS6KA2;RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 no no 2;3 0.00020438 74.464 By MS/MS By MS/MS 2 2 1.0698 0.96197 24.07 4 Median 0.85096 0.77956 27.398 2 0 Median 1.1811 1.0499 10.041 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21181000 11479000 9701800 18142000 10077000 8065200 3038400 1401800 1636600 0 0 0 0 0 0 0 0 0 0 0 0 38978 581;926 40932 206605;206606;206607;206608 209958;209959;209960;209961;209962 209960 5 YGQHPPDAVDEPQMLTNEK KCIQCGQYLDDPDLKYGQHPPDAVDEPQML PPDAVDEPQMLTNEKLSIFDANESGFESYE K Y G E K L 1 0 1 2 0 2 2 1 1 0 1 1 1 0 3 0 1 0 1 1 0 0 19 0 2167.9844 P26358 P26358 367 385 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 9.9286E-16 97.32 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 6 6 1 0.59902 0.56726 9.9739 14 Median 0.5 0.48032 NaN 1 0 Median 0.83504 0.73452 NaN 1 0 Median 0.5422 0.57122 5.6004 5 1 Median 0.62693 0.55998 6.0048 6 0 Median NaN NaN NaN 0 0 Median 0.67584 0.56427 NaN 1 0 Median 231770000 141500000 90272000 4904900 3298000 1606900 1608900 897840 711060 139520000 86160000 53365000 85165000 50775000 34390000 0 0 0 570780 372250 198530 38979 2142 40933;40934 206609;206610;206611;206612;206613;206614;206615;206616;206617;206618;206619;206620;206621;206622;206623 209963;209964;209965;209966;209967;209968;209969;209970;209971;209972;209973;209974;209975;209976;209977;209978;209979;209980;209981;209982 209967 905 20 YGQISEVVVVK SFDTNEQSLEQVFSKYGQISEVVVVKDRET VFSKYGQISEVVVVKDRETQRSRGFGFVTF K Y G V K D 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 1 4 0 0 11 0 1219.6812 Q14011;K7ENX8;K7ELV6;K7EJV5;K7ELT6;K7EJV1;K7EMY9;K7EPM4;K7ER40;K7EQR7;D6W5Y5 Q14011 29 39 CIRBP Cold-inducible RNA-binding protein yes no 2 0.00019153 76.064 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 2 2 1.3974 1.3101 16.728 9 Median 1.0118 0.954 NaN 1 0 Median 1.703 1.444 13.76 2 0 Median 1.2485 1.1707 NaN 1 0 Median 1.5068 1.2488 NaN 1 0 Median 1.365 1.4542 2.2691 2 0 Median 1.5738 1.2895 22.11 2 0 Median 88238000 40661000 47577000 16287000 8659000 7627600 7128000 2872300 4255700 25794000 10298000 15496000 4739300 2005200 2734100 17967000 10596000 7370800 16323000 6229800 10093000 38980 2851 40935 206624;206625;206626;206627;206628;206629;206630;206631;206632 209983;209984;209985;209986;209987;209988 209985 6 YGQISEVVVVKDR SFDTNEQSLEQVFSKYGQISEVVVVKDRET SKYGQISEVVVVKDRETQRSRGFGFVTFEN K Y G D R E 0 1 0 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 1 4 0 0 13 1 1490.8093 Q14011;K7ENX8;K7ELV6;K7EJV5;K7ELT6;K7EJV1;K7EMY9;K7EPM4;K7ER40;K7EQR7;D6W5Y5 Q14011 29 41 CIRBP Cold-inducible RNA-binding protein yes no 2;3 0.00023433 84.658 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 3 1.1691 1.2215 78.955 6 Median NaN NaN NaN 0 0 Median 1.4732 1.2999 NaN 1 0 Median 1.0834 1.1256 NaN 1 0 Median 1.5517 1.3736 NaN 1 0 Median 1.0165 1.1479 111.82 3 0 Median NaN NaN NaN 0 0 Median 42243000 23769000 18474000 0 0 0 3928700 1675000 2253700 6335200 3099300 3236000 2942700 1156900 1785700 29036000 17838000 11199000 0 0 0 38981 2851 40936 206633;206634;206635;206636;206637;206638 209989;209990;209991;209992;209993;209994;209995 209990 7 YGQISEVVVVKDRETQR SFDTNEQSLEQVFSKYGQISEVVVVKDRET QISEVVVVKDRETQRSRGFGFVTFENIDDA K Y G Q R S 0 2 0 1 0 2 2 1 0 1 0 1 0 0 0 1 1 0 1 4 0 0 17 2 2005.0593 Q14011;K7ENX8;K7ELV6;K7EJV5;K7ELT6;K7EJV1;K7EMY9;K7EPM4;K7ER40;K7EQR7;D6W5Y5 Q14011 29 45 CIRBP Cold-inducible RNA-binding protein yes no 3;4 7.2872E-06 68.257 By MS/MS By matching By MS/MS 2 1 2 0.91827 1.0979 70.266 5 Median 0.40584 0.47064 95.116 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2662 1.0979 NaN 1 0 Median 1.0332 1.239 16.683 2 0 Median NaN NaN NaN 0 0 Median 37105000 24358000 12747000 24989000 18078000 6911500 0 0 0 0 0 0 821430 306150 515280 11295000 5974200 5320600 0 0 0 38982 2851 40937 206639;206640;206641;206642;206643 209996;209997;209998;209999;210000;210001 210001 6 YGRDDIDNIAR WTKRDFNQFIKANEKYGRDDIDNIAREVEG ANEKYGRDDIDNIAREVEGKSPEEVMEYSA K Y G A R E 1 2 1 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 11 1 1306.6266 A0A0A0MRP6;B7ZLQ5;P28370 A0A0A0MRP6 863 873 SMARCA1 Probable global transcription activator SNF2L1 no no 2;3 7.8389E-05 73.632 By MS/MS By matching By matching By MS/MS 1 1 2 2 0.98774 0.99308 41.922 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70817 0.86128 NaN 1 0 Median 1.6071 1.5733 NaN 1 0 Median 0.58914 0.66726 32.034 2 0 Median 1.4835 1.3411 22.347 2 0 Median 29282000 14974000 14307000 0 0 0 0 0 0 6800000 3940300 2859700 2295900 630420 1665500 16696000 8967000 7729000 3489700 1436600 2053100 38983 167;643 40938 206644;206645;206646;206647;206648;206649 210002;210003 210002 2 YGREDLDVLGLTFR LKERRVYVTLTCAFRYGREDLDVLGLTFRK RYGREDLDVLGLTFRKDLFVANVQSFPPAP R Y G F R K 0 2 0 2 0 0 1 2 0 0 3 0 0 1 0 0 1 0 1 1 0 0 14 1 1652.8522 P49407;E9PM35 P49407 63 76 ARRB1 Beta-arrestin-1 yes no 2;3 3.2212E-07 101.6 By matching By MS/MS By matching 1 2 2 1.3965 1.3226 19.718 5 Median NaN NaN NaN 0 0 Median 1.6103 1.4522 NaN 1 0 Median 1.0039 1.0869 6.0778 2 0 Median 1.4169 1.5045 18.221 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37617000 18234000 19382000 0 0 0 3141200 1357900 1783300 33853000 16575000 17278000 622420 301390 321030 0 0 0 0 0 0 38984 2381 40939 206650;206651;206652;206653;206654 210004;210005;210006;210007 210006 4 YGSALASAGDPGHPNHPLHASQNSAR NWMVSIMDSTEAQLRYGSALASAGDPGHPN GHPNHPLHASQNSARRERMTAREEASLRTL R Y G A R R 5 1 2 1 0 1 0 3 3 0 2 0 0 0 3 4 0 0 1 0 0 0 26 0 2611.2276 O95071;E7EMW7 O95071 1855 1880 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 4;5 1.4533E-08 42.806 By MS/MS By MS/MS 3 3 0.63794 0.58685 19.832 6 Median 0.50661 0.51303 11.754 3 0 Plateau 0.78555 0.66856 1.1107 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19980000 11523000 8457300 7191900 4511100 2680800 12788000 7011500 5776500 0 0 0 0 0 0 0 0 0 0 0 0 38985 1744 40940 206655;206656;206657;206658;206659;206660 210008;210009;210010;210011;210012;210013;210014;210015;210016 210012 9 YGSDIVPFSK DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF R Y G S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 2 0 0 1 1 0 0 10 0 1111.555 P13010 P13010 316 325 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.00035174 103.55 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 2 2 1 2 0.98143 0.848 17.316 9 Median 0.98143 0.848 NaN 1 0 Median 1.1965 1.0472 NaN 1 0 Median 0.88262 0.89997 9.4477 2 0 Median 1.2511 1.0677 7.0176 2 0 Median 0.78104 0.79984 NaN 1 0 Median 0.86857 0.73118 20.494 2 0 Median 300810000 151790000 149010000 75127000 36799000 38327000 27295000 12592000 14704000 171980000 89652000 82332000 14158000 6443100 7715000 8600800 4530600 4070100 3641800 1776900 1864900 38986 1986 40941 206661;206662;206663;206664;206665;206666;206667;206668;206669 210017;210018;210019;210020;210021;210022;210023;210024;210025 210020 9 YGSDIVPFSKVDEEQMK DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ SDIVPFSKVDEEQMKYKSEGKCFSVLGFCK R Y G M K Y 0 0 0 2 0 1 2 1 0 1 0 2 1 1 1 2 0 0 1 2 0 0 17 1 1970.9295 P13010 P13010 316 332 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 6.8092E-06 64.537 By MS/MS By matching 1 1 1.0331 1.1186 5.1618 2 Median 1.0525 1.0785 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0141 1.1602 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26849000 12784000 14065000 23991000 11794000 12196000 0 0 0 2858800 989780 1869000 0 0 0 0 0 0 0 0 0 38987 1986 40942 206670;206671 210026;210027 210027 2 YGSGGGSKGGSISGGGYGSGGGK ISGGGYGSGGGSGGRYGSGGGSKGGSISGG GGSISGGGYGSGGGKHSSGGGSRGGSSSGG R Y G G K H 0 0 0 0 0 0 0 13 0 1 0 2 0 0 0 5 0 0 2 0 0 0 23 1 1889.8504 CON__P35908;CON__P35908v2;P35908 CON__P35908 579 601 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 0.041601 18.825 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 771430 771430 0 0 0 0 771430 771430 0 0 0 0 0 0 0 0 0 0 0 0 0 + 38988 764;765 40943 206672 210028 210028 1 YGSGSGQQSVTGVTSVDDSNSYWR LNTRHNVRLHSHDVRYGSGSGQQSVTGVTS VTGVTSVDDSNSYWRIRGKSATVCERGTPI R Y G W R I 0 1 1 2 0 2 0 4 0 0 0 0 0 0 0 6 2 1 2 3 0 0 24 0 2536.1102 Q99470;K7ELI9 Q99470 48 71 SDF2 Stromal cell-derived factor 2 yes no 2;3 2.6286E-11 52.522 By MS/MS By matching By matching By matching By matching 2 1 1 2 2 1.1361 1.0464 11.081 8 Median 1.1098 1.047 24.553 2 0 Median 1.2889 1.0955 NaN 1 0 Median 1.0452 0.97721 NaN 1 0 Median 1.3044 1.0688 13.242 2 0 Median 1.0719 1.0464 2.2466 2 0 Median NaN NaN NaN 0 0 Median 12285000 5585500 6699200 7751400 3316700 4434700 148520 70028 78492 1202800 676060 526780 715250 321040 394210 2466800 1201700 1265100 0 0 0 38989 3746 40944 206673;206674;206675;206676;206677;206678;206679;206680 210029;210030 210030 2 YGSRPVWADYR DEPWKYLESEEYQERYGSRPVWADYRRNHK YQERYGSRPVWADYRRNHKGGVPPQRTRKT R Y G Y R R 1 2 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 1 2 1 0 0 11 1 1368.6575 Q9Y676;A0A0G2JIC6 Q9Y676 68 78 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 3 0.01301 27.681 By MS/MS By matching 1 1 0.85758 0.90906 1.5188 2 Median 0.83539 0.89935 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88036 0.91888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9196900 4476600 4720300 7056100 3464000 3592100 0 0 0 2140800 1012600 1128100 0 0 0 0 0 0 0 0 0 38990 4480 40945 206681;206682 210031 210031 1 YGSVTVWR QITQVYGFYDECLRKYGSVTVWRYCTEIFD YDECLRKYGSVTVWRYCTEIFDYLSLSAII K Y G W R Y 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 1 2 0 0 8 0 966.49232 H3BV22;H3BTA2;P60510 H3BV22 100 107 PPP4C Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 4 catalytic subunit yes no 2 0.0023555 114.78 By MS/MS By MS/MS 1 1 1.1609 1.0323 10.63 2 Median 1.1906 1.1129 NaN 1 0 Median 1.132 0.95753 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11097000 4949400 6147100 9581700 4327300 5254400 1514800 622040 892740 0 0 0 0 0 0 0 0 0 0 0 0 38991 1236 40946 206683;206684 210032;210033;210034;210035 210032 4 YGTCPHGGYGLGLER GIDPTPYYWYTDQRKYGTCPHGGYGLGLER YGTCPHGGYGLGLERFLTWILNRYHIRDVC K Y G E R F 0 1 0 0 1 0 1 5 1 0 2 0 0 0 1 0 1 0 2 0 0 0 15 0 1635.7464 O43776 O43776 508 522 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 3 0.00020537 46.408 By MS/MS By MS/MS By matching 1 2 1 1.1512 1.0143 32.248 4 Median 1.1925 1.1447 NaN 1 0 Median 1.1855 1.0143 7.5906 2 0 Median NaN NaN NaN 0 0 Median 0.67388 0.56317 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22454000 10961000 11493000 7355400 3157100 4198300 13889000 7027800 6860900 0 0 0 1209900 776230 433680 0 0 0 0 0 0 38992 1589 40947 206685;206686;206687;206688 210036;210037;210038 210038 3 YGTDLSR SMDDHKLSLDELHRKYGTDLSRGLTSARAA SLDELHRKYGTDLSRGLTSARAAEILARDG K Y G S R G 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 1 0 1 0 0 0 7 0 810.38718 P05023;Q5TC01;Q5TC02 P05023 55 61 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes no 2 0.016334 68.915 By matching By MS/MS 1 4 1.0649 0.90612 39.889 5 Median 0.40281 0.40493 NaN 1 0 Median 1.139 0.97111 9.0768 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8729900 4166300 4563500 492590 339370 153230 8237300 3827000 4410300 0 0 0 0 0 0 0 0 0 0 0 0 38993 1857 40948 206689;206690;206691;206692;206693 210039;210040;210041;210042 210041 4 YGVAFYNYDAR ______________________________ REEKYGVAFYNYDARGADELSLQIGDTVHI K Y G A R G 2 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 3 1 0 0 11 0 1337.6041 A0A096LNH6;Q14185 A0A096LNH6 13 23 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.00018232 77.677 By MS/MS By matching 1 1 0.83899 0.82359 13.239 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.68113 0.74999 NaN 1 0 Median 1.0334 0.90441 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5776900 3474900 2302000 0 0 0 0 0 0 5380200 3290300 2089900 396670 184590 212080 0 0 0 0 0 0 38994 140 40949 206694;206695 210043 210043 1 YGVAWEK LVHREARDEYHCKKKYGVAWEKYCQRVPYR DEYHCKKKYGVAWEKYCQRVPYRIFPYIY_ K Y G E K Y 1 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 7 0 851.41775 Q14739 Q14739 595 601 LBR Lamin-B receptor yes yes 2 0.037258 46.426 By MS/MS 1 0.90661 0.91889 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90661 0.91889 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3990800 1997500 1993300 0 0 0 0 0 0 3990800 1997500 1993300 0 0 0 0 0 0 0 0 0 38995 2897 40950 206696 210044;210045 210044 2 YGVDLIR DCQEGKPKRTLYSKKYGVDLIRYTHAANTV KRTLYSKKYGVDLIRYTHAANTVVYSSNKI K Y G I R Y 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 834.45995 Q6UXN9 Q6UXN9 64 70 WDR82 WD repeat-containing protein 82 yes yes 2 0.0081656 86.512 By MS/MS By matching By MS/MS By MS/MS By matching By matching 1 4 3 1 1 1 1.3169 1.1782 13.11 11 Median 1.3169 1.2326 NaN 1 0 Median 1.3726 1.1799 7.0874 4 0 Median 1.1587 1.0873 16.561 3 0 Median 1.286 1.0725 NaN 1 0 Median 1.0693 1.041 NaN 1 0 Median 1.7323 1.5042 NaN 1 0 Median 30434000 14079000 16355000 6654100 3270200 3383900 6650900 2632100 4018800 12949000 6380600 6568100 2532800 1073300 1459500 997240 445590 551650 650350 277230 373120 38996 3190 40951 206697;206698;206699;206700;206701;206702;206703;206704;206705;206706;206707 210046;210047;210048;210049;210050;210051 210048 6 YGVFPLR KTLAVSGLGVVGRDKYGVFPLRGKILNVRE LGVVGRDKYGVFPLRGKILNVREASHKQIM K Y G L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 850.47012 P11388;Q02880;E9PCY5 P11388 481 487 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta;DNA topoisomerase 2 no no 2 0.0098565 83.229 By matching By MS/MS By matching By MS/MS By matching 2 1 1 1 2 1.3606 1.1429 17.326 7 Median NaN NaN NaN 0 0 Median 1.5808 1.3569 24.441 2 0 Median 0.8734 0.96704 NaN 1 0 Median 1.5215 1.3413 NaN 1 0 Median 1.0989 1.1429 NaN 1 0 Median 1.3563 1.1283 14.612 2 0 Median 13925000 6769900 7155200 0 0 0 1359500 633860 725630 3665400 1821100 1844300 1048500 413180 635270 6278700 3210900 3067800 1573000 690860 882180 38997 1963;2704 40952 206708;206709;206710;206711;206712;206713;206714 210052;210053;210054 210052 3 YGVIILDEAHER GMLLREAMNDPLLERYGVIILDEAHERTLA LERYGVIILDEAHERTLATDILMGVLKEVV R Y G E R T 1 1 0 1 0 0 2 1 1 2 1 0 0 0 0 0 0 0 1 1 0 0 12 0 1413.7252 O43143 O43143 254 265 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 1.0066E-06 119.45 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 3 2 7 2 1.0669 1.0001 16.212 15 Median 1.371 1.2966 NaN 1 0 Median 1.4188 1.2271 12.535 2 0 Median 0.88283 0.92563 10.332 3 1 Median 1.1032 0.95065 7.1758 2 0 Median 1.0669 1.0635 11.292 5 1 Median 0.96414 0.80775 11.638 2 0 Median 177840000 79679000 98165000 24586000 10626000 13960000 14749000 5326400 9422200 46348000 23390000 22958000 4866800 2306500 2560200 81895000 35171000 46724000 5400900 2860000 2541000 38998 1553 40953 206715;206716;206717;206718;206719;206720;206721;206722;206723;206724;206725;206726;206727;206728;206729;206730;206731 210055;210056;210057;210058;210059;210060;210061;210062;210063;210064;210065;210066;210067;210068;210069;210070;210071;210072;210073;210074;210075;210076;210077;210078 210064 24 YGVIIVGNPK LNDPRRLNVALTRARYGVIIVGNPKALSKQ LTRARYGVIIVGNPKALSKQPLWNHLLNYY R Y G P K A 0 0 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 1 2 0 0 10 0 1058.6124 Q92900 Q92900 879 888 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.00035038 102.72 By MS/MS By MS/MS By matching 1 1 1 0.73128 0.72504 26.197 3 Median NaN NaN NaN 0 0 Median 0.57179 0.48542 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84885 0.72504 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73128 0.79429 NaN 1 0 Median 9344800 5563300 3781500 0 0 0 6461900 4008300 2453700 0 0 0 2551300 1363600 1187600 0 0 0 331570 191380 140190 38999 3564 40954 206732;206733;206734 210079;210080;210081 210081 3 YGVMDTTTAQGR HTNLSVNAITADGSRYGVMDTTTAQGRSPV GSRYGVMDTTTAQGRSPVEVAQDVLAAVGK R Y G G R S 1 1 0 1 0 1 0 2 0 0 0 0 1 0 0 0 3 0 1 1 0 0 12 0 1298.5925 A0A0C4DGQ8;Q6IAN0 A0A0C4DGQ8 241 252 DHRS7B Dehydrogenase/reductase SDR family member 7B yes no 2 5.3218E-06 99.653 By matching By MS/MS 1 1 1.0692 0.94678 16.368 2 Median 1.131 1.063 NaN 1 0 Median 1.0108 0.84331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10435000 5164100 5271400 5988300 2923300 3065100 4447100 2240800 2206300 0 0 0 0 0 0 0 0 0 0 0 0 39000 252 40955 206735;206736 210082 210082 1 YGVNPGPIVGTTR VTELTNEDLLDQLVKYGVNPGPIVGTTRKL VKYGVNPGPIVGTTRKLYEKKLLKLREQGT K Y G T R K 0 1 1 0 0 0 0 3 0 1 0 0 0 0 2 0 2 0 1 2 0 0 13 0 1329.7041 P42166;P42167;G5E972;H0YJH7 P42166 127 139 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 4.4682E-07 123.11 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 6 8 5 4 0.87758 0.78053 14.163 24 Median 0.94536 0.90984 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.73864 0.71726 12.647 6 0 Median 1.0555 0.89381 13.356 8 0 Median 0.71576 0.71904 4.9245 5 1 Median 1.0287 0.85042 9.9116 4 0 Median 878360000 495000000 383360000 2720100 1498000 1222100 0 0 0 492660000 288360000 204300000 121670000 57977000 63691000 207690000 121420000 86273000 53620000 25741000 27879000 39001 2306;2307 40956 206737;206738;206739;206740;206741;206742;206743;206744;206745;206746;206747;206748;206749;206750;206751;206752;206753;206754;206755;206756;206757;206758;206759;206760 210083;210084;210085;210086;210087;210088;210089;210090;210091;210092;210093;210094;210095;210096;210097;210098;210099;210100;210101;210102;210103;210104;210105;210106;210107;210108;210109;210110;210111;210112;210113;210114;210115;210116;210117;210118;210119;210120;210121;210122;210123;210124;210125;210126;210127;210128;210129;210130;210131;210132;210133;210134;210135;210136;210137;210138;210139 210096 57 YGVSGYPTLK LAKVDCTANTNTCNKYGVSGYPTLKIFRDG NTCNKYGVSGYPTLKIFRDGEEAGAYDGPR K Y G L K I 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 1 1 0 2 1 0 0 10 0 1083.5601 P30101;H7BZJ3 P30101 95 104 PDIA3 Protein disulfide-isomerase A3 no no 2 0.00044455 74.376 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0104 0.8884 6.9682 4 Median 0.94701 0.86785 NaN 1 0 Median 1.0779 0.90944 NaN 1 0 Median 0.8757 0.84953 NaN 1 0 Median 1.1589 0.99399 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 152260000 74387000 77874000 71180000 36726000 34454000 59304000 27541000 31763000 15666000 7442900 8223400 6110400 2676300 3434100 0 0 0 0 0 0 39002 2189;1251 40957 206761;206762;206763;206764 210140;210141;210142;210143;210144;210145;210146;210147 210146 8 YGVTTLVR PTNATLNKFTEELKKYGVTTLVRVCDATYD FTEELKKYGVTTLVRVCDATYDKAPVEKEG K Y G V R V 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 1 2 0 0 8 0 907.51272 Q12974;E9PMY3;E9PML8;E9PJC0;E9PRR9 Q12974 37 44 PTP4A2 Protein tyrosine phosphatase type IVA 2 yes no 2 0.003446 89.55 By MS/MS 1 1.1359 0.94235 NaN 1 Median NaN NaN NaN 0 0 Median 1.1359 0.94235 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3916100 1929300 1986800 0 0 0 3916100 1929300 1986800 0 0 0 0 0 0 0 0 0 0 0 0 39003 2776 40958 206765 210148 210148 1 YGWLAAPQAYVSEK FLNNFDRDMNRLEERYGWLAAPQAYVSEKH RYGWLAAPQAYVSEKHEGNKIIAFERAGLL R Y G E K H 3 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 14 0 1581.7827 Q04446;E9PGM4 Q04446 594 607 GBE1 1,4-alpha-glucan-branching enzyme yes no 2 0.038314 39.266 By MS/MS 1 1.0193 0.9971 NaN 1 Median 1.0193 0.9971 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2531600 1409400 1122200 2531600 1409400 1122200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39004 2711 40959 206766 210149 210149 1 YGYTEDPLEVR EAVSSNVIDYGHASKYGYTEDPLEVRIYDP HASKYGYTEDPLEVRIYDPEIPTDEVENEF K Y G V R I 0 1 0 1 0 0 2 1 0 0 1 0 0 0 1 0 1 0 2 1 0 0 11 0 1340.6248 Q14966 Q14966 217 227 ZNF638 Zinc finger protein 638 yes yes 2 0.00011287 131.5 By MS/MS By matching By MS/MS By matching 1 2 1 1 0.89944 0.9803 13.723 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89944 0.9803 NaN 1 0 Median 0.96665 0.93489 13.95 2 0 Median 0.84869 0.89102 NaN 1 0 Median 1.4581 1.2041 NaN 1 0 Median 18790000 10433000 8356600 0 0 0 0 0 0 15462000 8818500 6643500 496370 247650 248720 2490300 1237800 1252500 340880 129020 211860 39005 2903 40960 206767;206768;206769;206770;206771 210150;210151;210152;210153 210150 4 YGYTHLSAGELLR PGAGKGTQCARIVEKYGYTHLSAGELLRDE EKYGYTHLSAGELLRDERKNPDSQYGELIE K Y G L R D 1 1 0 0 0 0 1 2 1 0 3 0 0 0 0 1 1 0 2 0 0 0 13 0 1478.7518 P30085;Q5T0D2 P30085 27 39 CMPK1 UMP-CMP kinase yes no 2;3 4.5E-05 125.74 By MS/MS By MS/MS By MS/MS 4 2 2 1.1881 1.1347 32.219 8 Median 1.1513 1.0957 42.507 4 0 Median 1.4635 1.2378 41.539 2 0 Median 1.2587 1.2052 7.6887 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 174720000 84605000 90114000 154890000 75586000 79309000 10461000 4338700 6122800 9363100 4680900 4682200 0 0 0 0 0 0 0 0 0 39006 2187 40961 206772;206773;206774;206775;206776;206777;206778;206779 210154;210155;210156;210157;210158;210159;210160;210161;210162 210156 9 YGYTHLSAGELLRDER PGAGKGTQCARIVEKYGYTHLSAGELLRDE GYTHLSAGELLRDERKNPDSQYGELIEKYI K Y G E R K 1 2 0 1 0 0 2 2 1 0 3 0 0 0 0 1 1 0 2 0 0 0 16 1 1878.9224 P30085;Q5T0D2 P30085 27 42 CMPK1 UMP-CMP kinase yes no 3;4 0.0009885 35.757 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0193 0.86564 73.783 6 Median 0.89868 0.96063 46.664 2 1 Median 1.0193 0.86564 8.154 2 0 Median 0.1576 0.17587 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1419 1.2192 NaN 1 0 Median NaN NaN NaN 0 0 Median 76992000 40738000 36255000 54968000 28489000 26479000 16527000 7914200 8612900 4100300 3583800 516500 0 0 0 1397400 751130 646290 0 0 0 39007 2187 40962 206780;206781;206782;206783;206784;206785 210163;210164;210165;210166;210167 210163 5 YGYTHLSTGDLLR PGSGKGTQCEKIVQKYGYTHLSTGDLLRSE QKYGYTHLSTGDLLRSEVSSGSARGKKLSE K Y G L R S 0 1 0 1 0 0 0 2 1 0 3 0 0 0 0 1 2 0 2 0 0 0 13 0 1494.7467 Q5T9B7;P00568 Q5T9B7 48 60 AK1 Adenylate kinase isoenzyme 1 yes no 2;3 1.7373E-05 91.658 By MS/MS By MS/MS By MS/MS By matching 3 4 2 1 1.2012 1.1082 31.467 10 Median 1.1683 1.1129 4.079 3 0 Median 1.2427 1.0508 16.885 4 1 Median 0.74094 0.7116 71.874 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.276 1.048 NaN 1 0 Median 309760000 139380000 170380000 275780000 122020000 153760000 15773000 6777200 8996100 17903000 10452000 7451200 0 0 0 0 0 0 302920 131830 171090 39008 1825 40963 206786;206787;206788;206789;206790;206791;206792;206793;206794;206795 210168;210169;210170;210171;210172;210173;210174;210175;210176;210177 210168 10 YHAASAEEQATIER MIQTLEAVKRKQFEKYHAASAEEQATIERN KYHAASAEEQATIERNPYTIFHQALKNCEP K Y H E R N 4 1 0 0 0 1 3 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 14 0 1574.7325 J3QLS3;Q9Y2R9;J3KSI8;J3QQS1;J3QKW2 J3QLS3 155 168 MRPS7 28S ribosomal protein S7, mitochondrial yes no 2;3 1.5109E-07 120.87 By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 2 1.4524 1.2282 17.66 7 Median 1.0583 1.0007 16.355 2 1 Median 1.4524 1.2282 NaN 1 0 Median 1.1337 1.0759 NaN 1 0 Median 1.7441 1.4404 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7311 1.4029 1.0361 2 0 Median 28670000 12614000 16056000 14138000 6795100 7342400 7503100 2906300 4596800 2824200 1368400 1455800 1034600 380170 654390 0 0 0 3170600 1163900 2006700 39009 1341 40964 206796;206797;206798;206799;206800;206801;206802 210178;210179;210180;210181;210182;210183;210184;210185;210186;210187;210188 210183 11 YHDEADQSALQR KKKGEFPGEKSKRLRYHDEADQSALQRMTR RLRYHDEADQSALQRMTRLRVTWSMQEDGL R Y H Q R M 2 1 0 2 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1431.6379 Q12789;H3BRD0 Q12789 1246 1257 GTF3C1 General transcription factor 3C polypeptide 1 yes no 2;3 0.00011 136.63 By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 3 4 4 1 1.1177 1.0655 16.919 12 Median 1.1994 1.1947 NaN 1 0 Median 1.2784 1.1098 10.498 3 0 Median 0.88618 0.96587 10.392 4 0 Median 1.0416 0.9174 21.125 3 1 Median 1.303 1.3554 NaN 1 0 Median NaN NaN NaN 0 0 Median 35280000 18182000 17098000 551490 144060 407430 2338800 1062600 1276200 28895000 15380000 13515000 2452800 1040700 1412100 1041500 554500 487000 0 0 0 39010 2758 40965 206803;206804;206805;206806;206807;206808;206809;206810;206811;206812;206813;206814;206815 210189;210190;210191;210192;210193;210194;210195;210196;210197;210198;210199 210190 10 YHDIEPGAVVK LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL QYLRYHDIEPGAVVKGTVLTIKSYGMLVKV R Y H V K G 1 0 0 1 0 0 1 1 1 1 0 1 0 0 1 0 0 0 1 2 0 0 11 0 1226.6295 Q14690;A0A3B3IUD7 Q14690 447 457 PDCD11 Protein RRP5 homolog yes no 2;3 0.00047241 80.755 By MS/MS 2 0.98877 1.0984 12.473 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98877 1.0984 12.473 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14140000 7126300 7014000 0 0 0 0 0 0 14140000 7126300 7014000 0 0 0 0 0 0 0 0 0 39011 448 40966 206816;206817 210200;210201;210202 210201 3 YHDMPDVIDFLVLR DPDTGKLTGGSFTMKYHDMPDVIDFLVLRQ KYHDMPDVIDFLVLRQQFDDAKYRRWNIGD K Y H L R Q 0 1 0 3 0 0 0 0 1 1 2 0 1 1 1 0 0 0 1 2 0 0 14 0 1731.8654 Q8WWQ0;H7C409;H7BZR9;Q9NSI6 Q8WWQ0 1042 1055 PHIP;BRWD1 PH-interacting protein;Bromodomain and WD repeat-containing protein 1 yes no 2 0.0017131 60.563 By MS/MS 1 0.79165 0.84205 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79165 0.84205 NaN 1 1 Median NaN NaN NaN 0 0 Median 878290 410330 467950 0 0 0 0 0 0 0 0 0 0 0 0 878290 410330 467950 0 0 0 39012 3512 40967 206818 210203 210203 1 YHEAWQK SADLEPITSQEEPVRYHEAWQKLCSAHGVL TSQEEPVRYHEAWQKLCSAHGVLVPGGFGV R Y H Q K L 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 7 0 960.44537 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6 P17812 354 360 CTPS1 CTP synthase 1;CTP synthase yes no 2 0.016244 69.176 By matching By MS/MS 1 1 1.1449 1.0364 19.431 2 Median 1.2275 1.189 NaN 1 0 Median 1.0679 0.90332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7043300 3059400 3983900 1177800 479950 697840 5865500 2579500 3286000 0 0 0 0 0 0 0 0 0 0 0 0 39013 2046 40968 206819;206820 210204;210205 210204 2 YHEEFEK LQRIKKTQDQISNIKYHEEFEKSRMGPSGG QDQISNIKYHEEFEKSRMGPSGGEGMEPER K Y H E K S 0 0 0 0 0 0 3 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 7 0 980.42396 Q14847;C9J9W2 Q14847 122 128 LASP1 LIM and SH3 domain protein 1 yes no 2 0.00044784 142.64 By MS/MS By MS/MS By matching By matching 4 3 2 1 1.0076 0.87933 20.275 10 Median 0.98633 0.96365 31.394 4 0 Median 1.0694 0.90119 12.347 3 0 Plateau 0.99753 0.95218 13.096 2 0 Median 0.97019 0.8267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10259000 4884600 5374700 4011600 1853200 2158400 3989100 1999000 1990100 1949600 893450 1056100 309020 138960 170060 0 0 0 0 0 0 39014 2901 40969 206821;206822;206823;206824;206825;206826;206827;206828;206829;206830 210206;210207;210208;210209 210209 4 YHEQLSTQSLIELFESFK NIRQNLQICVQVASKYHEQLSTQSLIELFE QLSTQSLIELFESFKSFEGLFYFLGSIVNF K Y H F K S 0 0 0 0 0 2 3 0 1 1 3 1 0 2 0 3 1 0 1 0 0 0 18 0 2198.0895 A0A087WVQ6;Q00610 A0A087WVQ6 693 710 CLTC Clathrin heavy chain;Clathrin heavy chain 1 yes no 3 2.0351E-08 92.307 By MS/MS 1 1.3925 1.2322 NaN 1 Median NaN NaN NaN 0 0 Median 1.3925 1.2322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2228500 921270 1307300 0 0 0 2228500 921270 1307300 0 0 0 0 0 0 0 0 0 0 0 0 39015 44 40970 206831 210210 210210 1 YHFAALEK GSALVSSLATGLKPRYHFAALEKTYYERLP ATGLKPRYHFAALEKTYYERLPYRNHIILQ R Y H E K T 2 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 1 0 0 0 8 0 977.49707 Q69YN2;A0A286YF56 Q69YN2 192 199 CWF19L1 CWF19-like protein 1 yes no 2 0.0042476 86.794 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 1.1697 1.0463 17.986 6 Median 1.1021 1.0437 21.917 2 0 Median 1.17 0.9945 23.056 2 1 Median 1.2575 1.2869 NaN 1 0 Median 1.0881 0.93526 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27832000 12179000 15653000 12883000 5605300 7278000 9800200 4456600 5343600 3186100 1203700 1982400 1962700 913290 1049400 0 0 0 0 0 0 39016 3129 40971 206832;206833;206834;206835;206836;206837 210211;210212;210213;210214 210211 4 YHFEDVGGVQGAR LLELQAHVRGEAAARYHFEDVGGVQGARAV ARYHFEDVGGVQGARAVHVESVQPLSLENL R Y H A R A 1 1 0 1 0 1 1 3 1 0 0 0 0 1 0 0 0 0 1 2 0 0 13 0 1433.6688 Q9HD47 Q9HD47 66 78 RANGRF Ran guanine nucleotide release factor yes yes 2;3 0.0056913 47.712 By MS/MS By MS/MS 3 1 1.2039 1.1378 NaN 1 Median 1.2039 1.1378 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9129000 5459100 3669800 9129000 5459100 3669800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39017 4038 40972 206838;206839;206840;206841 210215;210216;210217;210218 210217 4 YHFFLYK ELKDLPKRIPKDSARYHFFLYKHSHEGDYL RIPKDSARYHFFLYKHSHEGDYLESIVFIY R Y H Y K H 0 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 0 0 2 0 0 0 7 0 1016.512 Q12792;F8VS81;Q6IBS0;D6RG15;H0Y858 Q12792 236 242 TWF1;TWF2 Twinfilin-1;Twinfilin-2 no no 2 0.0098565 83.229 By MS/MS By matching By matching 2 1 2 1.2182 1.1098 39.37 5 Median 1.2072 1.1177 0.60508 2 0 Median 1.2789 1.0846 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80836 0.71401 62.373 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38857000 17910000 20947000 37212000 17138000 20074000 728890 293110 435780 0 0 0 916250 478460 437790 0 0 0 0 0 0 39018 2759;3138 40973 206842;206843;206844;206845;206846 210219;210220;210221 210221 3 YHFLEER PGVGELFGGGLREERYHFLEERLARSGLTE GGGLREERYHFLEERLARSGLTEVYQWYLD R Y H E R L 0 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 7 0 992.47158 Q96I59;H0YE96 Q96I59 412 418 NARS2 Probable asparagine--tRNA ligase, mitochondrial yes no 2 0.02459 70.268 By MS/MS 1 1.0606 0.90792 NaN 1 Median NaN NaN NaN 0 0 Median 1.0606 0.90792 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2892400 1348800 1543600 0 0 0 2892400 1348800 1543600 0 0 0 0 0 0 0 0 0 0 0 0 39019 3676 40974 206847 210222 210222 1 YHFNMGLLMGEAR EAAINRHRPQLLVERYHFNMGLLMGEARAV ERYHFNMGLLMGEARAVLKWADGKMIKNEV R Y H A R A 1 1 1 0 0 0 1 2 1 0 2 0 2 1 0 0 0 0 1 0 0 0 13 0 1537.717 P47897;A0A1B0GVU9;A0A0U1RQT0;C9J165;A0A0U1RQM8;A0A0U1RQE9;A0A0U1RRI9 P47897 142 154 QARS Glutamine--tRNA ligase yes no 2;3 0.002783 46.606 By MS/MS By MS/MS By matching 2 1 1 1.0481 1.0075 22.94 4 Median 1.0481 1.0075 0.34798 2 0 Median 0.9397 0.82352 NaN 1 0 Median 1.3585 1.4302 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12097000 5980500 6116300 10033000 4964300 5068700 1608800 837360 771470 455050 178840 276210 0 0 0 0 0 0 0 0 0 39020 2356 40975 206848;206849;206850;206851 210223;210224;210225;210226 210223 4 YHGHSMSDPGVSYR RSGKGPILMELQTYRYHGHSMSDPGVSYRT RYHGHSMSDPGVSYRTREEIQEVRSKSDPI R Y H Y R T 0 1 0 1 0 0 0 2 2 0 0 0 1 0 1 3 0 0 2 1 0 0 14 0 1591.6838 P08559;Q5JPU3;P29803 P08559 289 302 PDHA1;PDHA2 Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial yes no 3 0.00024548 56.122 By MS/MS By MS/MS By matching 1 1 1 0.9999 1.0161 8.9333 3 Median 0.91619 0.91505 NaN 1 0 Median 1.252 1.093 NaN 1 0 Median 0.9999 1.0161 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11027000 5057400 5970100 2984200 1563300 1420900 7584100 3265900 4318100 459190 228190 231000 0 0 0 0 0 0 0 0 0 39021 1902 40976 206852;206853;206854 210227;210228;210229;210230 210229 4 YHGNVMLLR YYKLRAAEQYTPKAKYHGNVMLLRAKTGGA YTPKAKYHGNVMLLRAKTGGAYGEDLGADY K Y H L R A 0 1 1 0 0 0 0 1 1 0 2 0 1 0 0 0 0 0 1 1 0 0 9 0 1101.5753 P49327;A0A0U1RQF0 P49327 2439 2447 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 9.227E-05 147.69 By MS/MS By MS/MS By matching 2 2 1 1.2534 1.1188 39.742 5 Median 1.1665 1.1161 12.929 2 0 Median 1.426 1.1746 6.8834 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61599 0.47894 NaN 1 0 Median 101550000 42881000 58671000 37218000 17301000 19917000 64121000 25467000 38654000 0 0 0 0 0 0 0 0 0 213190 113000 100180 39022 2377 40977 206855;206856;206857;206858;206859 210231;210232;210233;210234;210235 210233 5 YHGYIFGFYK TAGPSCTLLEEAFRRYHGYIFGFYKWHHEP EAFRRYHGYIFGFYKWHHEPAEFQAKTQVQ R Y H Y K W 0 0 0 0 0 0 0 2 1 1 0 1 0 2 0 0 0 0 3 0 0 0 10 0 1293.6182 P07686 P07686 101 110 HEXB Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A yes yes 3 0.0054179 37.191 By MS/MS 1 1.3987 1.3052 NaN 1 Median 1.3987 1.3052 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1564200 626600 937560 1564200 626600 937560 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39023 1888 40978 206860 210236;210237 210236 2 YHGYPYSFLMS VVLFFSWMLSIFRSKYHGYPYSFLMS____ FRSKYHGYPYSFLMS_______________ K Y H M S - 0 0 0 0 0 0 0 1 1 0 1 0 1 1 1 2 0 0 3 0 0 0 11 0 1363.5907 A0A087WU53;Q9H0U3 A0A087WU53 357 367 MAGT1 Magnesium transporter protein 1 yes no 2 0.001711 80.18 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3378400 0 0 3378400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39024 24 40979 206861 210238 210238 1 YHIDLDPHFNDILGQHSR AKVLGTEELYGYLKKYHIDLDPHFNDILGQ DLDPHFNDILGQHSRKRWENFIHSENRHLV K Y H S R K 0 1 1 3 0 1 0 1 3 2 2 0 0 1 1 1 0 0 1 0 0 0 18 0 2176.045 P19784;H3BSA1;H3BV19 P19784 262 279 CSNK2A2 Casein kinase II subunit alpha yes no 4 0.0075826 23.562 By MS/MS 2 0.92318 0.94062 8.4051 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92318 0.94062 8.4051 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4124100 2100100 2024100 0 0 0 0 0 0 4124100 2100100 2024100 0 0 0 0 0 0 0 0 0 39025 2069 40980 206862;206863 210239;210240 210240 2 YHIEVNR SQICTVGRLWISVARYHIEVNRVPAGNWVL RLWISVARYHIEVNRVPAGNWVLIEGVDQP R Y H N R V 0 1 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 929.47191 Q15029 Q15029 537 543 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0011623 132.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 2 2 1.1293 1.0775 32.719 7 Median 1.0347 1.0276 NaN 1 0 Median 1.3201 1.0989 NaN 1 0 Median 0.958 1.0232 NaN 1 0 Median 1.2679 1.0775 NaN 1 0 Median 1.1293 1.1837 NaN 1 1 Median 0.83709 0.72066 62.75 2 0 Median 30706000 13345000 17361000 1789500 942090 847440 16848000 6789900 10058000 2132300 1123100 1009200 4047700 1781600 2266200 4611700 2186900 2424900 1276500 521030 755460 39026 2917 40981 206864;206865;206866;206867;206868;206869;206870;206871 210241;210242;210243;210244;210245;210246;210247;210248;210249 210247 9 YHIIHADIYR KALEEGLTPQEICDKYHIIHADIYRWFNIS EICDKYHIIHADIYRWFNISFDIFGRTTTP K Y H Y R W 1 1 0 1 0 0 0 0 2 3 0 0 0 0 0 0 0 0 2 0 0 0 10 0 1299.6724 P56192;H0YHV5 P56192 336 345 MARS Methionine--tRNA ligase, cytoplasmic yes no 3 0.0016932 60.434 By MS/MS By MS/MS 1 1 0.99184 0.85335 15.749 2 Median NaN NaN NaN 0 0 Median 1.0953 0.95387 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89817 0.76342 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5724900 3458600 2266400 0 0 0 1929900 881780 1048100 0 0 0 3795000 2576800 1218200 0 0 0 0 0 0 39027 2508 40982 206872;206873 210250;210251 210251 2 YHINSVHAEDWFVVNPTTTK CLLCQKEFVSESGVKYHINSVHAEDWFVVN VHAEDWFVVNPTTTKSFEKLMKIKQRQQEE K Y H T K S 1 0 2 1 0 0 1 0 2 1 0 1 0 1 1 1 3 1 1 3 0 0 20 0 2357.144 G3XAG1;Q96ME7 G3XAG1 456 475 ZNF512 Zinc finger protein 512 yes no 4 0.055415 8.2879 By matching By MS/MS 1 1 0.81823 0.80824 11.816 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86215 0.87868 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.77655 0.74346 NaN 1 0 Median NaN NaN NaN 0 0 Median 3588300 1928500 1659800 0 0 0 0 0 0 1372300 697240 675080 0 0 0 2216000 1231200 984750 0 0 0 39028 1124 40983 206874;206875 210252 210252 1 YHLMQFAEVTR KMLLGHMPTVELLKKYHLMQFAEVTRAVSE LLKKYHLMQFAEVTRAVSEGNLLLLHEALA K Y H T R A 1 1 0 0 0 1 1 0 1 0 1 0 1 1 0 0 1 0 1 1 0 0 11 0 1393.6813 Q5JVF3 Q5JVF3 274 284 PCID2 PCI domain-containing protein 2 yes yes 2;3 4.8123E-05 102.61 By MS/MS By matching 4 1 1.0155 1.0554 19.008 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1557 1.2663 18.461 4 1 Linear 1.0155 0.86384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21377000 10666000 10711000 0 0 0 0 0 0 21283000 10617000 10666000 93315 48954 44362 0 0 0 0 0 0 39029 3057 40984;40985 206876;206877;206878;206879;206880 210253;210254;210255;210256 210255 1660 4 YHLQALR CALYPHFPAHSTDNRYHLQALRHLYVLAAE PAHSTDNRYHLQALRHLYVLAAEPRLLVPV R Y H L R H 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 899.49774 Q9H1A4;H0Y564 Q9H1A4 1601 1607 ANAPC1 Anaphase-promoting complex subunit 1 yes no 2 0.030853 64.563 By MS/MS 1 0.67225 0.74607 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67225 0.74607 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3122800 1737100 1385700 0 0 0 0 0 0 3122800 1737100 1385700 0 0 0 0 0 0 0 0 0 39030 3933 40986 206881 210257 210257 1 YHLQSVIR PPGTPYELAKEDPQRYHLQSVIRTSASLDE AKEDPQRYHLQSVIRTSASLDEGATAALEL R Y H I R T 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 1 1 0 0 8 0 1014.5611 Q9ULL5 Q9ULL5 698 705 PRR12 Proline-rich protein 12 yes yes 2 0.0035088 91.906 By MS/MS 1 0.71604 0.7918 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71604 0.7918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4002800 2222300 1780500 0 0 0 0 0 0 4002800 2222300 1780500 0 0 0 0 0 0 0 0 0 39031 4325 40987 206882 210258;210259 210258 2 YHLTEPGLASR AALCSRDDFLGSFCRYHLTEPGLASRHLLS SFCRYHLTEPGLASRHLLSPVGRRQVAGHT R Y H S R H 1 1 0 0 0 0 1 1 1 0 2 0 0 0 1 1 1 0 1 0 0 0 11 0 1242.6357 Q9NXE4;H7C1Q6;H7C0W5 Q9NXE4 778 788 SMPD4 Sphingomyelin phosphodiesterase 4 yes no 2;3 0.00036308 71.223 By MS/MS By MS/MS 3 1 0.78845 0.75694 22.771 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73638 0.78754 27.537 3 1 Median 0.84421 0.72752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19620000 10481000 9139900 0 0 0 0 0 0 14956000 7952400 7003300 4664700 2528100 2136600 0 0 0 0 0 0 39032 4162 40988 206883;206884;206885;206886 210260;210261;210262;210263;210264;210265 210262 6 YHNVGLSK TFKEEEPVKKIMEKKYHNVGLSKCEIKVAM KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ K Y H S K C 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 8 0 916.47667 Q14103;H0Y8G5;H0YA96 Q14103 244 251 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes no 2 0.0028246 104.44 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 3 4 1.3209 1.1425 19.932 15 Median 1.0986 1.0813 NaN 1 0 Median 1.3209 1.1303 NaN 1 0 Median 1.0892 1.1117 20.128 4 0 Median 1.3693 1.1617 0.2948 2 0 Median 1.0414 1.0703 6.8178 3 0 Median 1.5169 1.2758 27.881 4 0 Median 32155000 14906000 17248000 667530 320350 347170 5286600 2203400 3083200 10799000 5099700 5699000 1653200 678330 974920 10688000 5391600 5296000 3061300 1213100 1848200 39033 2854 40989 206887;206888;206889;206890;206891;206892;206893;206894;206895;206896;206897;206898;206899;206900;206901 210266;210267;210268;210269;210270;210271;210272;210273;210274;210275;210276;210277;210278;210279 210272 14 YHPDKGGDEVMFMR TVAEIKKQYRLLSLKYHPDKGGDEVMFMRI KYHPDKGGDEVMFMRIAKAYAALTDEESRK K Y H M R I 0 1 0 2 0 0 1 2 1 0 0 1 2 1 1 0 0 0 1 1 0 0 14 1 1680.7388 Q9UGP8;A6PVC9 Q9UGP8 131 144 SEC63 Translocation protein SEC63 homolog yes no 3 0.00083383 57.136 By MS/MS 1 1.0416 1.0689 NaN 1 Median 1.0416 1.0689 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7034200 3163500 3870800 7034200 3163500 3870800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39034 4264 40990 206902 210280 210280 1 YHPFLYDR KAHVEGDGVVEGIIRYHPFLYDRETYPDDP VVEGIIRYHPFLYDRETYPDDPCFPSKLKD R Y H D R E 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 2 0 0 0 8 0 1109.5294 A6NHR9 A6NHR9 429 436 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0069954 79.597 By MS/MS By MS/MS By MS/MS 1 2 1 0.7742 0.84387 6.6063 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76657 0.83556 1.3993 2 2 Median 1.0639 0.93565 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 55846000 30501000 25346000 0 0 0 0 0 0 52207000 28666000 23541000 3639600 1834900 1804700 0 0 0 0 0 0 39035 518 40991 206903;206904;206905;206906 210281;210282;210283;210284;210285 210284 5 YHPGYFGK GNAGGLHHHRINFDKYHPGYFGKVGMKHYH HRINFDKYHPGYFGKVGMKHYHLKRNQSFC K Y H G K V 0 0 0 0 0 0 0 2 1 0 0 1 0 1 1 0 0 0 2 0 0 0 8 0 967.4552 E9PLL6;P46776 E9PLL6 48 55 RPL27A 60S ribosomal protein L27a yes no 2 0.014501 50.966 By MS/MS By MS/MS By matching 1 1 4 1.086 0.98252 13.913 6 Median NaN NaN NaN 0 0 Median 0.96018 0.82153 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0286 1.1843 NaN 1 0 Median 1.2023 0.98252 9.9074 4 0 Median 18040000 8442800 9597300 0 0 0 12524000 5894400 6629400 0 0 0 0 0 0 1700500 747890 952630 3815800 1800500 2015200 39036 961 40992 206907;206908;206909;206910;206911;206912 210286;210287;210288 210288 3 YHSDDYIK EIYRPHKANAEEMTKYHSDDYIKFLRSIRP NAEEMTKYHSDDYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1039.4611 Q13547;Q5TEE2 Q13547 67 74 HDAC1 Histone deacetylase 1 yes no 2 0.0048619 79.116 By matching By MS/MS By MS/MS 1 1 2 1.1512 1.0441 11.574 4 Linear 0.89414 0.8665 NaN 1 0 Median 1.2125 1.0449 NaN 1 0 Median 0.88848 0.89984 13.981 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4862000 2332300 2529700 616280 315020 301260 2709900 1235800 1474100 1535800 781470 754360 0 0 0 0 0 0 0 0 0 39037 2823 40993 206913;206914;206915;206916 210289;210290;210291 210290 3 YHSDEYIK EIYRPHKATAEEMTKYHSDEYIKFLRSIRP TAEEMTKYHSDEYIKFLRSIRPDNMSEYSK K Y H I K F 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1053.4767 Q92769;H3BM24;E5RFI6;E5RJ04;E5RGV4;E5RHE7;E5RH52;E5RG37;E5RFP9;E5RK19 Q92769 68 75 HDAC2 Histone deacetylase 2 yes no 2 0.018519 47.849 By matching By MS/MS By matching By matching 1 2 1 1 1.3192 1.1952 9.0934 5 Median 1.3192 1.2778 NaN 1 0 Median 1.406 1.2045 1.0872 2 0 Median 1.0601 1.0907 NaN 1 0 Median 1.1653 1.018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10011000 4411300 5599600 588420 241610 346810 6270400 2608200 3662200 2654800 1334100 1320800 497150 227360 269790 0 0 0 0 0 0 39038 3555 40994 206917;206918;206919;206920;206921 210292;210293 210293 2 YHSDFNR DAYWPEAKRAALDERYHSDFNRQDRFHDFD KRAALDERYHSDFNRQDRFHDFDHRDRGRY R Y H N R Q 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 7 0 937.40423 Q15424;K7EII0 Q15424 736 742 SAFB Scaffold attachment factor B1 yes no 2 0.044246 43 By matching By MS/MS By matching 1 2 1 0.99487 1.0269 3.5996 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95356 1.0133 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99487 1.0412 0.067492 2 0 Median 1.1572 0.96467 NaN 1 0 Median 2287900 1092000 1195900 0 0 0 0 0 0 249740 138700 111040 0 0 0 1743900 818020 925930 294180 135280 158900 39039 2951 40995 206922;206923;206924;206925 210294;210295;210296 210295 3 YHSDFNRQDR DAYWPEAKRAALDERYHSDFNRQDRFHDFD ALDERYHSDFNRQDRFHDFDHRDRGRYPDH R Y H D R F 0 2 1 2 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 10 1 1336.5909 Q15424;K7EII0 Q15424 736 745 SAFB Scaffold attachment factor B1 yes no 3 0.025568 24.855 By MS/MS By matching 3 1 1.0637 1.1025 4.4479 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.042 1.1272 3.6407 3 0 Median 1.1868 1.0492 NaN 1 0 Median 4164300 2030900 2133400 0 0 0 0 0 0 0 0 0 0 0 0 3679300 1832800 1846500 484950 198080 286880 39040 2951 40996 206926;206927;206928;206929 210297;210298;210299 210298 3 YHSLAPMYYR TTVKFEIWDTAGQERYHSLAPMYYRGAQAA AGQERYHSLAPMYYRGAQAAIVVYDITNTD R Y H Y R G 1 1 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 3 0 0 0 10 0 1299.607 P51148;K7ERI8;K7ERQ8;F8VVK3;K7ENY4;F8VVZ0;P20339;P61020;F8VUA5 P51148 83 92 RAB5C;RAB5B;RAB5A Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B no no 2;3 2.9101E-07 163.99 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 6 3 2 3 3 1.2257 1.0753 20.155 22 Median 1.007 0.95918 4.6456 5 0 Median 1.2579 1.0753 8.7548 6 0 Median 1.0618 1.0201 8.5829 3 0 Median 1.2544 1.0383 11.906 2 0 Median 1.7162 1.7249 13.182 3 0 Median 1.4869 1.2035 2.603 3 0 Plateau 440540000 209970000 230570000 327300000 161440000 165850000 58338000 25000000 33338000 25242000 11663000 13579000 3984200 1763200 2221000 19527000 7650500 11876000 6154000 2450800 3703200 39041 2427;2078;2538 40997;40998 206930;206931;206932;206933;206934;206935;206936;206937;206938;206939;206940;206941;206942;206943;206944;206945;206946;206947;206948;206949;206950;206951 210300;210301;210302;210303;210304;210305;210306;210307;210308;210309;210310;210311;210312;210313;210314;210315;210316;210317;210318;210319;210320;210321;210322;210323;210324;210325;210326;210327;210328;210329 210321 836 30 YHSQYHTVAGNDIK DFLVIPSPVLVKLYKYHSQYHTVAGNDIKI KYHSQYHTVAGNDIKISVTNEHSESTLNVM K Y H I K I 1 0 1 1 0 1 0 1 2 1 0 1 0 0 0 1 1 0 2 1 0 0 14 0 1631.7692 P42356 P42356 524 537 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 3 0.054565 12.383 By MS/MS 1 0.94724 0.82381 NaN 1 Median NaN NaN NaN 0 0 Median 0.94724 0.82381 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 919520 441670 477840 0 0 0 919520 441670 477840 0 0 0 0 0 0 0 0 0 0 0 0 39042 2311 40999 206952 210330 210330 1 YHSYKDLSEFLR LMLRSSSNLALALYRYHSYKDLSEFLRGLV LYRYHSYKDLSEFLRGLVMNYPHITNLTNL R Y H L R G 0 1 0 1 0 0 1 0 1 0 2 1 0 1 0 2 0 0 2 0 0 0 12 1 1556.7623 O75976 O75976 933 944 CPD Carboxypeptidase D no no 3 0.009411 28.624 By MS/MS 1 1.1062 1.1172 NaN 1 Median 1.1062 1.1172 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4589900 2647900 1942000 4589900 2647900 1942000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39043 1714 41000 206953 210331 210331 1 YHTEIVFAR DLKDMTSEQLDDILKYHTEIVFARTSPQQK LDDILKYHTEIVFARTSPQQKLIIVEGCQR K Y H A R T 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 1 1 0 0 9 0 1134.5822 P05023 P05023 684 692 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 1.1651E-10 174.69 By MS/MS By MS/MS By matching By matching 3 3 1 1 1.1374 1.0229 30.069 8 Median 1.1274 1.0862 46.531 3 2 Median 1.2768 1.0867 17.509 3 1 Median 0.90208 0.96321 NaN 1 0 Median 0.99296 0.85225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 255550000 109590000 145960000 69498000 30278000 39220000 183090000 77888000 105200000 2084000 1041200 1042800 876110 386080 490040 0 0 0 0 0 0 39044 1857 41001 206954;206955;206956;206957;206958;206959;206960;206961 210332;210333;210334;210335;210336;210337;210338 210335 7 YHTINGHNAEVR TFDDHDPVDKIVLQKYHTINGHNAEVRKAL LQKYHTINGHNAEVRKALSRQEMQEVQSSR K Y H V R K 1 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1409.68 P22626;A0A087WUI2 P22626 174 185 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 8.7823E-07 113.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 6 4 9 8 1.1943 1.0571 9.9066 35 Median 1.3697 1.3895 5.1098 2 0 Median 1.1981 1.028 9.4237 6 2 Median 1.0074 1.0291 5.2962 6 0 Median 1.2873 1.1056 4.4298 4 0 Median 1.0627 1.0689 8.6061 9 1 Median 1.2738 1.051 8.1631 8 0 Median 314090000 153190000 160900000 749040 296040 453010 10048000 4420900 5626700 50723000 24550000 26173000 18668000 7701500 10966000 210020000 105630000 104390000 23884000 10592000 13292000 39045 2103 41002 206962;206963;206964;206965;206966;206967;206968;206969;206970;206971;206972;206973;206974;206975;206976;206977;206978;206979;206980;206981;206982;206983;206984;206985;206986;206987;206988;206989;206990;206991;206992;206993;206994;206995;206996 210339;210340;210341;210342;210343;210344;210345;210346;210347;210348;210349;210350;210351;210352;210353;210354;210355;210356;210357;210358;210359;210360;210361;210362;210363;210364;210365;210366;210367;210368;210369;210370;210371;210372;210373;210374;210375;210376;210377;210378;210379;210380;210381;210382;210383;210384;210385;210386;210387;210388;210389;210390;210391;210392;210393 210356 55 YHTINGHNAEVRK TFDDHDPVDKIVLQKYHTINGHNAEVRKAL QKYHTINGHNAEVRKALSRQEMQEVQSSRS K Y H R K A 1 1 2 0 0 0 1 1 2 1 0 1 0 0 0 0 1 0 1 1 0 0 13 1 1537.775 P22626;A0A087WUI2 P22626 174 186 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes no 2;3 0.00011844 72.089 By matching By MS/MS By MS/MS By MS/MS 4 4 7 3 1.1031 1.1595 7.1878 18 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0816 1.1696 5.3421 4 0 Median 1.3425 1.2204 4.9539 4 0 Median 1.001 1.0832 6.2219 7 0 Median 1.3005 1.2119 7.8015 3 0 Median 39534000 18704000 20831000 0 0 0 0 0 0 1404500 651940 752610 1814900 757450 1057500 35264000 16844000 18420000 1051000 450750 600300 39046 2103 41003 206997;206998;206999;207000;207001;207002;207003;207004;207005;207006;207007;207008;207009;207010;207011;207012;207013;207014 210394;210395;210396;210397;210398;210399;210400;210401;210402;210403 210397 10 YHTMQAAVDAVAR LLSQFREYLDYDDTRYHTMQAAVDAVARVT TRYHTMQAAVDAVARVTGQHPEVPPAFWNN R Y H A R V 4 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 0 13 0 1431.6929 Q9BVI4;F5H303 Q9BVI4 182 194 NOC4L Nucleolar complex protein 4 homolog yes no 2;3 5.9301E-06 94.122 By MS/MS By MS/MS 1 1 1.5153 1.4317 30.779 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7201 1.7798 NaN 1 0 Median 1.3348 1.1517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5820000 2455700 3364300 0 0 0 0 0 0 4470100 1905100 2565000 1349900 550540 799340 0 0 0 0 0 0 39047 3854 41004 207015;207016 210404;210405 210404 2 YHTSQSGDEMTSLSEYVSR HEDSTNRRRLSELLRYHTSQSGDEMTSLSE QSGDEMTSLSEYVSRMKETQKSIYYITGES R Y H S R M 0 1 0 1 0 1 2 1 1 0 1 0 1 0 0 5 2 0 2 1 0 0 19 0 2175.9379 P08238 P08238 457 475 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2;3 6.9431E-110 225.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 17 12 6 4 3 2 1.1549 1.1059 20.204 44 Median 1.1674 1.115 24.576 17 2 Median 1.1549 0.99716 9.0255 12 0 Median 1.1054 1.1587 4.1079 6 0 Median 1.2 1.0342 13.413 4 0 Median 1.7144 1.7326 18.344 3 0 Median 1.3056 1.0722 11.212 2 0 Median 1714400000 774070000 940330000 1399200000 632850000 766350000 150060000 67129000 82930000 117860000 55924000 61933000 16304000 7343300 8961200 29306000 10073000 19233000 1669500 750340 919130 39048 1899 41005;41006 207017;207018;207019;207020;207021;207022;207023;207024;207025;207026;207027;207028;207029;207030;207031;207032;207033;207034;207035;207036;207037;207038;207039;207040;207041;207042;207043;207044;207045;207046;207047;207048;207049;207050;207051;207052;207053;207054;207055;207056;207057;207058;207059;207060 210406;210407;210408;210409;210410;210411;210412;210413;210414;210415;210416;210417;210418;210419;210420;210421;210422;210423;210424;210425;210426;210427;210428;210429;210430;210431;210432;210433;210434;210435;210436;210437;210438;210439;210440;210441;210442;210443;210444;210445;210446;210447;210448;210449;210450;210451;210452;210453;210454;210455 210416 671 50 YHTVNGHNCEVR TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL IQKYHTVNGHNCEVRKALSKQEMASASSSQ K Y H V R K 0 1 2 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 1 2 0 0 12 0 1484.6579 H0YH80;P09651;F8W6I7;F8VZ49;F8VTQ5;A0A2R8Y4L2 P09651 167 178 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed no no 3 0.0027802 37.144 By MS/MS By MS/MS By matching 2 1 1 1.1344 1.004 4.0035 4 Median NaN NaN NaN 0 0 Median 1.1644 1.0142 1.857 2 0 Median 0.95916 0.93696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1422 1.0069 NaN 1 0 Median 3408100 1678400 1729700 0 0 0 1096900 508790 588100 2167500 1102100 1065400 0 0 0 0 0 0 143740 67511 76227 39049 1919;365;1183 41007 207061;207062;207063;207064 210456;210457 210457 2 YHVLVNLGK RKEIDLLLGQTDDTRYHVLVNLGKKITDYG QTDDTRYHVLVNLGKKITDYGGDKEIQNMD R Y H G K K 0 0 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1041.5971 O75643;A0A494C1A5 O75643 169 177 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.00010586 146.21 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 0.91661 0.77242 29.949 7 Median NaN NaN NaN 0 0 Median 0.82509 0.72805 56.332 2 0 Median 1.0187 1.1201 NaN 1 0 Median 0.99589 0.92 24.726 2 0 Median NaN NaN NaN 0 0 Median 0.90441 0.76124 0.66432 2 1 Median 81310000 39101000 42209000 0 0 0 24263000 12603000 11660000 34531000 16825000 17706000 14759000 6915200 7844000 0 0 0 7757200 2758000 4999200 39050 1688 41008 207065;207066;207067;207068;207069;207070;207071;207072 210458;210459;210460;210461;210462;210463;210464;210465;210466;210467;210468;210469;210470 210467 13 YHVPVVVVPEGSASDTHEQAILR AFSVASAAAVLSHNRYHVPVVVVPEGSASD PEGSASDTHEQAILRLQVTNVLSQPLTQAT R Y H L R L 2 1 0 1 0 1 2 1 2 1 1 0 0 0 2 2 1 0 1 5 0 0 23 0 2502.2867 P04844;Q5JYR4;Q5JYR7 P04844 267 289 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes no 2;3;4 3.4622E-35 139.44 By MS/MS By MS/MS By MS/MS By MS/MS 7 3 2 1 0.84474 0.78428 10.759 13 Median 0.80175 0.78887 10.701 7 0 Median 0.89944 0.77629 15.386 3 0 Median 0.73247 0.73552 9.0769 2 0 Median 0.97435 0.82304 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 246980000 131110000 115870000 208950000 111930000 97023000 10420000 5095100 5324800 27136000 13851000 13285000 469340 233290 236050 0 0 0 0 0 0 39051 1854 41009 207073;207074;207075;207076;207077;207078;207079;207080;207081;207082;207083;207084;207085 210471;210472;210473;210474;210475;210476;210477;210478;210479;210480;210481;210482;210483;210484;210485 210473 15 YHVSEKPYGIVEK THVLVPVWIIHYYMKYHVSEKPYGIVEKKS MKYHVSEKPYGIVEKKSRIFPGDTILETGE K Y H E K K 0 0 0 0 0 0 2 1 1 1 0 2 0 0 1 1 0 0 2 2 0 0 13 1 1547.7984 O95139 O95139 88 100 NDUFB6 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 yes yes 2;3 0.0016641 38.769 By MS/MS By MS/MS By MS/MS 2 1 1 1.0332 1.0346 21.388 4 Median 1.0332 1.0346 18.722 2 0 Median 1.4122 1.2486 NaN 1 0 Median 0.78071 0.79683 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18391000 9317700 9072900 13098000 6875900 6221700 2013300 748080 1265300 3279500 1693700 1585900 0 0 0 0 0 0 0 0 0 39052 1746 41010 207086;207087;207088;207089 210486;210487;210488;210489;210490;210491 210487 6 YHWLVLPWTSISSLK DEQVVVIKDKYPKARYHWLVLPWTSISSLK YHWLVLPWTSISSLKAVAREHLELLKHMHT R Y H L K A 0 0 0 0 0 0 0 0 1 1 3 1 0 0 1 3 1 2 1 1 0 0 15 0 1828.9876 F8W6G5;C9JZ40;Q7Z2E3;A0A0A0MRW7 F8W6G5 142 156 APTX Aprataxin yes no 2 0.034831 24.792 By matching By MS/MS 1 1 1.0327 0.99698 16.984 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0209 1.1242 NaN 1 0 Median 1.0447 0.88415 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3305100 1517200 1787900 0 0 0 0 0 0 556600 281630 274970 2748500 1235600 1513000 0 0 0 0 0 0 39053 730 41011 207090;207091 210492 210492 1 YHYLGGR SLTAPKKSATQFTGRYHYLGGRFVPPALEK SATQFTGRYHYLGGRFVPPALEKKYQLNLP R Y H G R F 0 1 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 2 0 0 0 7 0 864.42424 Q8NCW5 Q8NCW5 255 261 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 0.0058531 95.378 By MS/MS By matching By matching 1 1 1 1.4981 1.4192 24.718 3 Plateau 1.4981 1.4192 NaN 1 0 Median 1.5358 1.302 NaN 1 0 Median 0.95219 0.89175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12577000 5219800 7357100 8618200 3464700 5153500 2558700 1061400 1497200 1400000 693700 706330 0 0 0 0 0 0 0 0 0 39054 3420 41012 207092;207093;207094 210493 210493 1 YHYVGTFPDGQK PDECPRTVRSGDFVRYHYVGTFPDGQKFDS FVRYHYVGTFPDGQKFDSSYDRDSTFNVFV R Y H Q K F 0 0 0 1 0 1 0 2 1 0 0 1 0 1 1 0 1 0 2 1 0 0 12 0 1410.6568 O95302 O95302 59 70 FKBP9 Peptidyl-prolyl cis-trans isomerase FKBP9 yes yes 2;3 0.0046935 63.216 By MS/MS By MS/MS 1 2 0.080802 0.075077 12.03 3 Median 0.080802 0.075077 NaN 1 1 Median 0.084876 0.070533 16.23 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 151370000 140410000 10963000 38705000 35319000 3386000 112670000 105090000 7576900 0 0 0 0 0 0 0 0 0 0 0 0 39055 1763 41013 207095;207096;207097 210494;210495;210496 210495 3 YIAENGTDPINNQPLSEEQLIDIK SPVSNHVYERRLIEKYIAENGTDPINNQPL INNQPLSEEQLIDIKVAHPIRPKPPSATSI K Y I I K V 1 0 3 2 0 2 3 1 0 4 2 1 0 0 2 1 1 0 1 0 0 0 24 0 2713.3447 Q9UMS4;F5GY56 Q9UMS4 33 56 PRPF19 Pre-mRNA-processing factor 19 yes no 2;3 3.9321E-18 83.729 By matching By MS/MS By MS/MS By MS/MS 1 2 2 1 0.68471 0.65522 47.462 6 Median 0.2301 0.22145 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63028 0.61139 2.8888 2 0 Median 0.89943 0.77141 5.7727 2 0 Median 0.72217 0.68799 NaN 1 0 Median NaN NaN NaN 0 0 Median 120320000 68876000 51441000 3414700 2866700 548010 0 0 0 93919000 54105000 39813000 16303000 8179000 8124100 6680500 3725200 2955300 0 0 0 39056 4334 41014 207098;207099;207100;207101;207102;207103 210497;210498;210499;210500;210501;210502;210503;210504;210505 210500 9 YIAIVSTTVETK VCMISFAHNVAAQGKYIAIVSTTVETKEPE QGKYIAIVSTTVETKEPEKEIRPALELLEP K Y I T K E 1 0 0 0 0 0 1 0 0 2 0 1 0 0 0 1 3 0 1 2 0 0 12 0 1323.7286 P50395 P50395 349 360 GDI2 Rab GDP dissociation inhibitor beta yes yes 2 6.1328E-06 117.7 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.0821 0.95232 8.7917 4 Median 1.1815 1.1284 NaN 1 0 Median 1.1078 0.9593 NaN 1 0 Median 0.9675 0.93766 NaN 1 0 Median 1.057 0.94538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19011000 8756200 10254000 3266700 1617300 1649300 1481600 638760 842840 10490000 4818800 5671100 3772300 1681200 2091100 0 0 0 0 0 0 39057 2411 41015 207104;207105;207106;207107 210506;210507;210508 210506 3 YIAIVSTTVETKEPEK VCMISFAHNVAAQGKYIAIVSTTVETKEPE IAIVSTTVETKEPEKEIRPALELLEPIEQK K Y I E K E 1 0 0 0 0 0 3 0 0 2 0 2 0 0 1 1 3 0 1 2 0 0 16 1 1806.9615 P50395 P50395 349 364 GDI2 Rab GDP dissociation inhibitor beta yes yes 3 8.4605E-09 98.694 By matching By MS/MS By MS/MS 1 2 1 0.87698 0.90209 12.541 4 Median 0.88274 0.84977 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.86414 0.90209 1.1672 2 2 Median 1.1884 1.1287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36063000 18449000 17614000 3285700 1495200 1790500 0 0 0 26770000 13702000 13068000 6007200 3251700 2755500 0 0 0 0 0 0 39058 2411 41016 207108;207109;207110;207111 210509;210510;210511 210509 3 YIANTVELR SGYYDFLVEVEGDNRYIANTVELRVKISTE VEGDNRYIANTVELRVKISTEVGITNVDLS R Y I L R V 1 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 0 9 0 1077.5819 P04844 P04844 358 366 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 0.0004206 130.27 By matching By MS/MS By MS/MS 2 2 1 1.312 1.0887 20.857 5 Median 1.0431 1.0264 39.514 2 0 Median 1.3003 1.0753 1.752 2 0 Median NaN NaN NaN 0 0 Median 1.4396 1.207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41350000 16667000 24682000 3264700 1485400 1779200 32189000 12782000 19407000 0 0 0 5895900 2399400 3496500 0 0 0 0 0 0 39059 1854 41017 207112;207113;207114;207115;207116 210512;210513;210514;210515;210516 210512 5 YIAPTVLTDVDPK GQKIAFGGETDEATRYIAPTVLTDVDPKTK TRYIAPTVLTDVDPKTKVMQEEIFGPILPI R Y I P K T 1 0 0 2 0 0 0 0 0 1 1 1 0 0 2 0 2 0 1 2 0 0 13 0 1430.7657 P51648;J3QRD1 P51648 312 324 ALDH3A2 Fatty aldehyde dehydrogenase yes no 2 2.7171E-05 93.058 By MS/MS By matching By matching By matching By matching 1 1 1 2 1 0.94969 0.88321 19.778 6 Median 0.79219 0.74457 NaN 1 0 Median 1.101 0.96307 NaN 1 0 Median 0.81919 0.80997 NaN 1 0 Median 0.96785 0.85652 37.347 2 0 Median NaN NaN NaN 0 0 Median 1.1507 0.98766 NaN 1 0 Median 11691000 6470200 5220700 6186600 3326900 2859700 1053500 446280 607200 3725300 2314400 1410900 544800 295050 249750 0 0 0 180820 87631 93191 39060 1349 41018 207117;207118;207119;207120;207121;207122 210517;210518 210517 2 YIASLVNADK EQLCFLVRPRIKNMRYIASLVNADKLAGRT IKNMRYIASLVNADKLAGRTRKYKVIFSPQ R Y I D K L 2 0 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1092.5815 F5H008;A0A2R8YDQ0;Q9H267 F5H008 67 76 VPS33B Vacuolar protein sorting-associated protein 33B yes no 2 0.0070645 48.283 By MS/MS 2 0.69351 0.63571 113.08 2 Median NaN NaN NaN 0 0 Median 0.69351 0.63571 113.08 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3553100 1768600 1784500 0 0 0 3553100 1768600 1784500 0 0 0 0 0 0 0 0 0 0 0 0 39061 397 41019 207123;207124 210519 210519 1 YIASTQRPDGTWR ______________________________ GKYIASTQRPDGTWRKQRRVKEGYVPQEEV K Y I W R K 1 2 0 1 0 1 0 1 0 1 0 0 0 0 1 1 2 1 1 0 0 0 13 1 1549.7637 Q9BRP8 Q9BRP8 15 27 WIBG Partner of Y14 and mago yes yes 2;3 0.0034938 44.318 By MS/MS By matching 2 2 0.89931 0.89798 12.688 4 Median 0.92421 0.99498 19.26 2 0 Median NaN NaN NaN 0 0 Median 0.89931 0.89798 2.6054 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27529000 14326000 13204000 23037000 11777000 11260000 0 0 0 4492000 2548700 1943400 0 0 0 0 0 0 0 0 0 39062 3799 41020 207125;207126;207127;207128 210520;210521;210522 210521 3 YIASVQGSTPSPR ______________________________ ERYIASVQGSTPSPRQKSMKGFYFAKLYYE R Y I P R Q 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 3 1 0 1 1 0 0 13 0 1361.6939 P49792;F8WBP7 P49792 11 23 RANBP2 E3 SUMO-protein ligase RanBP2 yes no 2 3.1267E-15 185.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 6 6 2 3 0.94407 0.82269 15.809 20 Median 1.0938 1.1008 NaN 1 1 Median 1.101 0.92834 30.328 2 1 Median 0.71766 0.75933 8.8537 6 0 Median 1.1334 0.91886 14.697 6 1 Median 0.80819 0.81449 4.2129 2 0 Median 1.0207 0.81859 14.675 3 0 Median 93712000 50298000 43414000 1502000 700610 801340 8965900 3997500 4968500 59147000 33437000 25709000 14543000 7526300 7016700 1363200 854490 508720 8191000 3781500 4409500 39063 2401 41021 207129;207130;207131;207132;207133;207134;207135;207136;207137;207138;207139;207140;207141;207142;207143;207144;207145;207146;207147;207148 210523;210524;210525;210526;210527;210528;210529;210530;210531;210532;210533;210534;210535;210536;210537;210538;210539;210540;210541;210542;210543;210544;210545;210546;210547;210548;210549;210550 210526 28 YIATDFTLK NFELNPDLHLPAENKYIATDFTLKAFDCPE LPAENKYIATDFTLKAFDCPETEYPVKIVN K Y I L K A 1 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 2 0 1 0 0 0 9 0 1070.5648 O43847;G3V1R5;F5H7V1 O43847 662 670 NRD1 Nardilysin yes no 2 0.053179 30.167 By MS/MS By matching 1 1 1.2646 1.1527 15.939 2 Median 1.332 1.2902 NaN 1 0 Median 1.2007 1.0298 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14389000 6196800 8192600 9960600 4190900 5769700 4428800 2005900 2422900 0 0 0 0 0 0 0 0 0 0 0 0 39064 1597 41022 207149;207150 210551 210551 1 YICDNQDTISSK GDLLECADDRADLAKYICDNQDTISSKLKE LAKYICDNQDTISSKLKECCDKPLLEKSHC K Y I S K L 0 0 1 2 1 1 0 0 0 2 0 1 0 0 0 2 1 0 1 0 0 0 12 0 1442.6348 CON__P02769 CON__P02769 286 297 yes yes 2 9.3873E-06 107.24 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33850000 33850000 0 5646500 5646500 0 28204000 28204000 0 0 0 0 0 0 0 0 0 0 0 0 0 + 39065 746 41023 207151;207152 210552;210553 210553 2 YIDDKDVFQK NEVEDRLTSFITVFKYIDDKDVFQKFYARM ITVFKYIDDKDVFQKFYARMLAKRLIHGLS K Y I Q K F 0 0 0 3 0 1 0 0 0 1 0 2 0 1 0 0 0 0 1 1 0 0 10 1 1269.6241 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 437 446 CUL2 Cullin-2 yes no 2;3 0.025568 43.808 By MS/MS By matching 2 2 0.98958 1.0152 16.622 4 Median 0.98611 1.0152 3.6812 2 0 Median 1.1688 1.1298 26.472 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17883000 9503700 8379300 15227000 8285000 6941700 2656300 1218700 1437600 0 0 0 0 0 0 0 0 0 0 0 0 39066 196 41024 207153;207154;207155;207156 210554;210555 210555 2 YIDENQDR ______________________________ ALTTLFKYIDENQDRYIKKLAKWVAIQSVS K Y I D R Y 0 1 1 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 8 0 1051.4571 Q96KP4;J3QKT2;J3QQN6;J3QR27;J3QLU1;J3QKQ0;J3QRD0;J3QL02;J3KSV5;A0A087WYZ1;J3QRA8;J3KSS4;J3QRP4 Q96KP4 10 17 CNDP2 Cytosolic non-specific dipeptidase yes no 2 0.024653 43.246 By matching By MS/MS 1 1 1.0995 1.0199 0.086735 2 Median 1.0342 1.0205 NaN 1 0 Median 1.1689 1.0193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2140400 981070 1159300 1140600 519110 621460 999780 461960 537820 0 0 0 0 0 0 0 0 0 0 0 0 39067 3696 41025 207157;207158 210556 210556 1 YIDPSGFVK HLQYLFALLQNSNRRYIDPSGFVKALGLDT QNSNRRYIDPSGFVKALGLDTGQQQDAQEF R Y I V K A 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 9 0 1024.5229 Q86UV5;E9PRY5 Q86UV5 162 170 USP48 Ubiquitin carboxyl-terminal hydrolase 48 yes no 2 0.015224 43.769 By MS/MS By matching By matching 1 1 1 0.9418 0.95333 12.707 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89251 0.95333 NaN 1 0 Median 1.186 1.0423 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9418 0.8112 NaN 1 0 Median 12743000 6219500 6523100 0 0 0 0 0 0 11859000 5850600 6008600 378620 144560 234060 0 0 0 504760 224270 280500 39068 3281 41026 207159;207160;207161 210557 210557 1 YIDQEELNK KKDGDKKKKKKIKEKYIDQEELNKTKPIWT KKIKEKYIDQEELNKTKPIWTRNPDDITNE K Y I N K T 0 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1150.5506 P07900;Q14568;P08238;Q58FF8 P07900 284 292 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 4.3564E-18 159.2 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 6 2 1 1 3 1.1281 0.99249 21.906 22 Median 1.0052 0.9267 15.522 9 2 Median 1.0871 0.9465 8.2831 6 1 Median 1.2381 1.2924 6.3497 2 0 Median 1.2765 1.1035 NaN 1 0 Median 2.1022 2.1397 NaN 1 0 Median 1.4062 1.1519 11.488 3 0 Plateau 1337500000 599720000 737780000 649320000 291180000 358140000 587730000 268250000 319480000 43695000 19080000 24615000 19646000 7774400 11872000 18906000 5701700 13205000 18194000 7730500 10463000 39069 1894;1899;3040 41027 207162;207163;207164;207165;207166;207167;207168;207169;207170;207171;207172;207173;207174;207175;207176;207177;207178;207179;207180;207181;207182;207183 210558;210559;210560;210561;210562;210563;210564;210565;210566;210567;210568;210569;210570;210571;210572;210573;210574;210575;210576;210577;210578;210579;210580;210581;210582;210583;210584;210585;210586 210578 29 YIDQEELNKTKPIWTR KKDGDKKKKKKIKEKYIDQEELNKTKPIWT IDQEELNKTKPIWTRNPDDITNEEYGEFYK K Y I T R N 0 1 1 1 0 1 2 0 0 2 1 2 0 0 1 0 2 1 1 0 0 0 16 2 2033.0582 P07900;Q14568;P08238;Q58FF8 P07900 284 299 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 4 0.044178 22.475 By MS/MS 1 0.24782 0.27296 NaN 1 Median 0.24782 0.27296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7165100 5748600 1416500 7165100 5748600 1416500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39070 1894;1899;3040 41028 207184 210587 210587 1 YIDSADLEPITSQEEPVR LEHSALAINHKLEIKYIDSADLEPITSQEE SADLEPITSQEEPVRYHEAWQKLCSAHGVL K Y I V R Y 1 1 0 2 0 1 3 0 0 2 1 0 0 0 2 2 1 0 1 1 0 0 18 0 2060.9902 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6 P17812 336 353 CTPS1 CTP synthase 1;CTP synthase yes no 2;3 7.2058E-19 169.62 By MS/MS By matching By MS/MS By matching 2 2 1 1 0.87511 0.83802 7.6857 6 Median 0.83737 0.79835 6.48 2 0 Median 0.9564 0.82574 11.272 2 0 Median 0.86959 0.91488 NaN 1 0 Median 0.9951 0.84027 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44539000 23675000 20864000 35312000 19279000 16033000 4448100 2092200 2356000 4303200 2084200 2218900 476010 220050 255970 0 0 0 0 0 0 39071 2046 41029 207185;207186;207187;207188;207189;207190 210588;210589;210590;210591;210592;210593 210589 6 YIDSADLEPITSQEEPVRYHEAWQK LEHSALAINHKLEIKYIDSADLEPITSQEE TSQEEPVRYHEAWQKLCSAHGVLVPGGFGV K Y I Q K L 2 1 0 2 0 2 4 0 1 2 1 1 0 0 2 2 1 1 2 1 0 0 25 1 3003.425 P17812;A0A3B3IRI2;B4E1E0;A0A3B3IRQ8;A0A3B3ITF6 P17812 336 360 CTPS1 CTP synthase 1;CTP synthase yes no 4 0.0026398 24.896 By MS/MS 1 0.73462 0.73698 NaN 1 Median 0.73462 0.73698 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10483000 5696700 4786700 10483000 5696700 4786700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39072 2046 41030 207191 210594 210594 1 YIDVVINK EIEKFQKGEGKDEEKYIDVVINKNMKLGQK EGKDEEKYIDVVINKNMKLGQKVLIPVKQF K Y I N K N 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 1 2 0 0 8 0 962.54368 O75525;E5RG12;E5RJZ9;E5RHD3 O75525 45 52 KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 3 yes no 2 0.0037995 85.265 By MS/MS 1 0.59469 0.57694 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59469 0.57694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9844200 6431200 3413000 0 0 0 0 0 0 9844200 6431200 3413000 0 0 0 0 0 0 0 0 0 39073 1680 41031 207192 210595;210596 210595 2 YIEDKDVFQK AELEDTLNQVMVVFKYIEDKDVFQKFYAKM MVVFKYIEDKDVFQKFYAKMLAKRLVHQNS K Y I Q K F 0 0 0 2 0 1 1 0 0 1 0 2 0 1 0 0 0 0 1 1 0 0 10 1 1283.6398 A0A0C4DGX4;A0A590UJ50;Q13616;A0A590UJ21;A0A590UK34;A0A590UJ56;A0A590UJC4 A0A0C4DGX4 431 440 CUL1 Cullin-1 yes no 3 0.015031 28.956 By MS/MS By MS/MS 1 1 1.1345 1.1985 17.005 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93029 1.0627 NaN 1 0 Median 1.3836 1.3517 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9748600 4426000 5322600 0 0 0 0 0 0 7272100 3303000 3969200 2476500 1123100 1353400 0 0 0 0 0 0 39074 256 41032 207193;207194 210597;210598 210597 2 YIEEAIEK TNFSTKAMREENGLKYIEEAIEKLSKRHQY REENGLKYIEEAIEKLSKRHQYHIRAYDPK K Y I E K L 1 0 0 0 0 0 3 0 0 2 0 1 0 0 0 0 0 0 1 0 0 0 8 0 993.50188 A0A2R8YDT1;P15104 A0A2R8YDT1 403 410 GLUL Glutamine synthetase yes no 2 0.0038342 85.064 By MS/MS 2 1.1763 1.097 27.437 2 Median 1.1763 1.097 27.437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21335000 10454000 10881000 21335000 10454000 10881000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39075 398 41033 207195;207196 210599;210600 210600 2 YIEEQLLQR FDAVVGYLEDIIMEKYIEEQLLQRIPEFNM DIIMEKYIEEQLLQRIPEFNMAAFTTTLQH K Y I Q R I 0 1 0 0 0 2 2 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1190.6295 H3BU49;H3BM52;Q9Y2Y0 H3BU49 36 44 ARL2BP ADP-ribosylation factor-like protein 2-binding protein yes no 2 0.000446 126.67 By MS/MS By matching By matching 1 2 1 1.139 1.0164 63.987 4 Median 0.96306 0.92321 NaN 1 0 Median 2.115 1.7822 65.83 2 0 Median NaN NaN NaN 0 0 Median 0.57813 0.62926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27452000 13062000 14390000 23964000 11603000 12361000 2345200 863680 1481500 0 0 0 1142900 595000 547920 0 0 0 0 0 0 39076 1210 41034 207197;207198;207199;207200 210601 210601 1 YIEGLSAESNSISK PPKTQRLLHSEAYLKYIEGLSAESNSISKW KYIEGLSAESNSISKWDQTLAARRRDVHLS K Y I S K W 1 0 1 0 0 0 2 1 0 2 1 1 0 0 0 4 0 0 1 0 0 0 14 0 1496.7359 Q86U86 Q86U86 1613 1626 PBRM1 Protein polybromo-1 yes yes 2 7.8822E-09 131.43 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 1 1.3141 1.2746 34.955 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84887 0.93156 NaN 1 0 Median 1.9173 1.7898 29.079 3 0 Median 1.2143 1.2708 NaN 1 0 Median 1.1256 0.96616 NaN 1 0 Median 80442000 40527000 39915000 0 0 0 0 0 0 61065000 32808000 28257000 10038000 3949200 6088900 8436300 3368700 5067600 902160 400730 501420 39077 3273 41035 207201;207202;207203;207204;207205;207206 210602;210603;210604;210605;210606;210607 210602 6 YIEIFPSR ANQALLKHREEIGNRYIEIFPSRRNEVRTH REEIGNRYIEIFPSRRNEVRTHVGSYKGKK R Y I S R R 0 1 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 8 0 1023.5389 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 255 262 GRSF1 G-rich sequence factor 1 yes no 2 0.0027604 105.12 By matching By MS/MS By MS/MS 1 1 1 1.3094 1.1481 3.879 3 Median NaN NaN NaN 0 0 Median 1.3094 1.1401 NaN 1 0 Median 1.1602 1.1481 NaN 1 0 Median 1.4147 1.2233 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16560000 6622200 9937400 0 0 0 1259700 529490 730180 8955300 3625500 5329900 6344600 2467200 3877400 0 0 0 0 0 0 39078 1035 41036 207207;207208;207209 210608;210609;210610;210611 210609 4 YIEIFPSRR ANQALLKHREEIGNRYIEIFPSRRNEVRTH EEIGNRYIEIFPSRRNEVRTHVGSYKGKKI R Y I R R N 0 2 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 9 1 1179.64 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 255 263 GRSF1 G-rich sequence factor 1 yes no 2;3 0.0015106 85.676 By MS/MS By matching 2 1 0.72225 0.72257 20.225 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89375 0.83366 NaN 1 0 Median 0.58366 0.62628 NaN 1 0 Median NaN NaN NaN 0 0 Median 11243000 4825200 6418100 0 0 0 0 0 0 0 0 0 7439400 2369000 5070400 3803800 2456200 1347700 0 0 0 39079 1035 41037 207210;207211;207212 210612;210613 210612 2 YIEIYVQK VHDLVLYLYRNNLQKYIEIYVQKVNPSRLP YRNNLQKYIEIYVQKVNPSRLPVVIGGLLD K Y I Q K V 0 0 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 0 1054.5699 A0A087WVQ6;Q00610;P53675;A0A087WX41 A0A087WVQ6 803 810 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.0022855 121.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 4 2 4 1 1 1.2152 1.1067 19.689 15 Median 1.2524 1.1887 9.4507 3 0 Plateau 1.3052 1.1297 14.135 4 0 Median 0.95428 1.0348 15.858 2 0 Median 1.3304 1.145 16.794 4 0 Median 0.98127 1.0295 NaN 1 0 Median 0.75411 0.60457 NaN 1 0 Median 358810000 156550000 202260000 171820000 74050000 97773000 136660000 58176000 78484000 34381000 17511000 16870000 11307000 4698300 6608800 4384500 1990700 2393700 256170 124040 132130 39080 44 41038 207213;207214;207215;207216;207217;207218;207219;207220;207221;207222;207223;207224;207225;207226;207227 210614;210615;210616;210617;210618;210619;210620;210621;210622;210623;210624;210625;210626;210627;210628;210629;210630;210631;210632;210633;210634;210635;210636 210623 23 YIELFLNSTPGGGSGMGGSGMGGYGR AVAAMSKDKNNMQHRYIELFLNSTPGGGSG GGSGMGGSGMGGYGRDGMDNQGGYGSVGRM R Y I G R D 0 1 1 0 0 0 1 10 0 1 2 0 2 1 1 3 1 0 2 0 0 0 26 0 2521.1366 P31942 P31942 262 287 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2;3 2.9362E-13 57.578 By matching By MS/MS By matching By MS/MS By matching 1 2 1 9 2 0.91678 0.88812 37.203 15 Median NaN NaN NaN 0 0 Median 1.0361 0.87635 NaN 1 0 Median 0.43608 0.43462 91.446 2 0 Median 0.97948 0.82521 NaN 1 0 Median 0.90156 0.91315 9.8383 9 0 Median 1.1479 1.0116 12.64 2 0 Median 56210000 28612000 27598000 0 0 0 1524200 692780 831410 1554100 1053500 500650 142050 66368 75678 52306000 26514000 25793000 682990 285300 397690 39081 2208 41039;41040;41041 207228;207229;207230;207231;207232;207233;207234;207235;207236;207237;207238;207239;207240;207241;207242 210637;210638;210639;210640;210641;210642;210643;210644 210644 948;949 8 YIELLTR PSGVILQEAADVHARYIELLTRSGDYYRFL EAADVHARYIELLTRSGDYYRFLSEMLKSL R Y I T R S 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 0 0 0 7 0 906.51747 P15924 P15924 1003 1009 DSP Desmoplakin yes yes 2 0.0028269 110.61 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 2 2 2 1 3 4 0.82797 0.72649 27.248 13 Median 0.6647 0.64285 0.75934 2 0 Median 0.80323 0.66986 2.6944 2 0 Median 0.82866 0.8924 30.411 2 1 Median 0.82797 0.72649 NaN 1 0 Median 0.58123 0.60588 51.789 2 1 Median 1.0987 0.93647 18.422 4 0 Median 69842000 35042000 34800000 14473000 8196800 6276000 9743500 4903000 4840500 18087000 7667600 10420000 572510 292870 279640 20364000 10991000 9372700 6602500 2990700 3611800 39082 2021 41042 207243;207244;207245;207246;207247;207248;207249;207250;207251;207252;207253;207254;207255;207256 210645;210646;210647;210648;210649;210650;210651;210652;210653;210654;210655 210651 11 YIENMSR VKTYHYHCGVQDKAKYIENMSRGIYKLYCK CGVQDKAKYIENMSRGIYKLYCKNHSGNDE K Y I S R G 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 7 0 911.4171 Q8IWS0;A0A0D9SGE8;Q5JRC6 Q8IWS0 313 319 PHF6 PHD finger protein 6 yes no 2 0.022643 73.039 By matching By MS/MS By MS/MS 1 2 1 1.2888 1.1878 7.3089 4 Median NaN NaN NaN 0 0 Median 1.4082 1.1999 NaN 1 0 Median 1.2082 1.2644 10.913 2 1 Median 1.3223 1.1758 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8151700 3502800 4649000 0 0 0 1573600 654490 919150 5287900 2292300 2995600 1290200 555980 734180 0 0 0 0 0 0 39083 3327 41043 207257;207258;207259;207260 210656;210657;210658 210656 3 YIESPVLFLR SIIRHRESTPKVVSKYIESPVLFLREDVGK KVVSKYIESPVLFLREDVGKVKFDIRYIVL K Y I L R E 0 1 0 0 0 0 1 0 0 1 2 0 0 1 1 1 0 0 1 1 0 0 10 0 1235.6914 Q14166 Q14166 452 461 TTLL12 Tubulin--tyrosine ligase-like protein 12 yes yes 2 0.00041855 75.38 By MS/MS By matching By matching 2 1 1 1.0636 0.98469 20.597 4 Median 1.01 0.97632 5.8512 2 0 Median 1.098 0.95288 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6435 1.453 NaN 1 0 Median 18183000 7784400 10399000 14462000 6681500 7780700 3573000 1044900 2528100 0 0 0 0 0 0 0 0 0 147920 58000 89925 39084 2861 41044 207261;207262;207263;207264 210659;210660;210661;210662 210660 4 YIETDPANRDR SQEEEKTEALTSAKRYIETDPANRDRRTPI SAKRYIETDPANRDRRTPITVVKQGFEPPS R Y I D R R 1 2 1 2 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 11 1 1348.6371 A0A0A0MS51;A0A0A0MT01;P06396;CON__Q3SX14 A0A0A0MS51 696 706 GSN Gelsolin yes no 3 0.058615 15.539 By MS/MS 1 0.65662 0.67323 NaN 1 Median 0.65662 0.67323 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 880340 496820 383520 880340 496820 383520 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 39085 176 41045 207265 210663 210663 1 YIETTPLTIK YLEMEFKEAITAIMKYIETTPLTIKGKSVK TAIMKYIETTPLTIKGKSVKICVPGKKKAQ K Y I I K G 0 0 0 0 0 0 1 0 0 2 1 1 0 0 1 0 3 0 1 0 0 0 10 0 1177.6594 Q14966 Q14966 731 740 ZNF638 Zinc finger protein 638 yes yes 2 0.00033468 86.136 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 2 0.90095 0.87864 17.929 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81712 0.89941 NaN 1 0 Median 0.97057 0.88129 NaN 1 0 Median 0.68943 0.71675 28.374 2 0 Median 1.0608 0.89509 12.543 2 0 Median 37459000 20140000 17319000 0 0 0 0 0 0 25170000 13832000 11338000 1531200 781960 749200 8237700 4463800 3773900 2520100 1063000 1457100 39086 2903 41046 207266;207267;207268;207269;207270;207271 210664;210665;210666;210667;210668;210669;210670 210665 7 YIFDLFYKR ESLWPIFRIHHQKTRYIFDLFYKRKAISRE HHQKTRYIFDLFYKRKAISRELYEYCIKEG R Y I K R K 0 1 0 1 0 0 0 0 0 1 1 1 0 2 0 0 0 0 2 0 0 0 9 1 1263.6652 P41223 P41223 59 67 BUD31 Protein BUD31 homolog yes yes 2;3 0.0056224 41.979 By MS/MS 2 1.2839 1.3427 2.8357 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2839 1.3427 2.8357 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3060100 1252200 1807900 0 0 0 0 0 0 3060100 1252200 1807900 0 0 0 0 0 0 0 0 0 39087 2297 41047 207272;207273 210671;210672;210673 210671 3 YIFDNVAK TTEELKTWIKRVQKRYIFDNVAKVWKDYDR IKRVQKRYIFDNVAKVWKDYDRDKDDKISW R Y I A K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 968.49673 Q15293 Q15293 115 122 RCN1 Reticulocalbin-1 yes yes 2 0.0075003 66.799 By MS/MS By matching By MS/MS 4 2 1 1.0115 0.99669 26.974 7 Median 1.016 0.94444 19.733 4 0 Median 1.4075 1.1902 46.126 2 0 Median 0.97082 1.0035 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120070000 56455000 63619000 107730000 50503000 57230000 1706500 621400 1085100 10634000 5330200 5304000 0 0 0 0 0 0 0 0 0 39088 2940 41048 207274;207275;207276;207277;207278;207279;207280 210674;210675;210676;210677 210674 4 YIFPTLDKPSVVSLQNLIVR LMTDVLVFLQEKDQKYIFPTLDKPSVVSLQ LDKPSVVSLQNLIVRDIANQEKGMFLISAA K Y I V R D 0 1 1 1 0 1 0 0 0 2 3 1 0 1 2 2 1 0 1 3 0 0 20 1 2301.3097 V9GYM8;Q92974 V9GYM8 555 574 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes no 3 0.016879 18.296 By MS/MS By matching 2 1 0.76072 0.78743 26.896 3 Median 0.73287 0.75079 6.7376 2 0 Median 1.1818 1.1875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2227100 1190400 1036700 1719500 950670 768810 507640 239720 267920 0 0 0 0 0 0 0 0 0 0 0 0 39089 4562 41049 207281;207282;207283 210678;210679 210678 2 YIFSVVENLQR FLPRPIRQQLLYKRRYIFSVVENLQRLCYM YKRRYIFSVVENLQRLCYMGLLQFGPTEKF R Y I Q R L 0 1 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 2 0 0 11 0 1366.7245 Q12789 Q12789 961 971 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00065281 65.305 By matching By MS/MS 1 1 1.0626 1.0217 10.625 2 Median NaN NaN NaN 0 0 Median 1.1302 0.94771 NaN 1 0 Median 0.99902 1.1014 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6043200 3159300 2883900 0 0 0 1106200 589910 516250 4937100 2569400 2367700 0 0 0 0 0 0 0 0 0 39090 2758 41050 207284;207285 210680;210681 210680 2 YIFTMLSSLAR FGTRLHGGKDSASPRYIFTMLSSLARLLFP ASPRYIFTMLSSLARLLFPPKDDHTLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 2 1 0 1 0 0 0 11 0 1300.6849 P11388 P11388 805 815 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00023961 84.213 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 1 1 4 2 4 3 1.3669 1.2288 14.151 15 Median 1.5523 1.5524 NaN 1 0 Median 1.4351 1.2247 NaN 1 0 Median 1.0929 1.2022 9.8599 4 0 Median 1.6653 1.4659 1.5162 2 0 Median 1.3393 1.3796 12.687 4 0 Median 1.4917 1.2139 10.007 3 0 Plateau 55293000 23855000 31438000 822850 402210 420640 4109000 1107400 3001600 19022000 8936900 10085000 1264800 472540 792250 28624000 12329000 16295000 1450500 607310 843140 39091 1963 41051;41052 207286;207287;207288;207289;207290;207291;207292;207293;207294;207295;207296;207297;207298;207299;207300 210682;210683;210684;210685;210686;210687;210688;210689;210690;210691 210690 748 10 YIFTMLSTLAR FGTRLHGGKDAASPRYIFTMLSTLARLLFP ASPRYIFTMLSTLARLLFPAVDDNLLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 1 2 0 1 0 0 0 11 0 1314.7006 Q02880;E9PCY5 Q02880 826 836 TOP2B DNA topoisomerase 2-beta;DNA topoisomerase 2 yes no 2 0.00018232 77.677 By matching By MS/MS By MS/MS By MS/MS By matching 1 2 1 2 1 0.92613 0.97034 18.538 7 Median 0.87042 0.86082 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.82501 0.90151 9.0543 2 0 Median 1.5543 1.3606 NaN 1 0 Median 1.0532 1.111 19.139 2 1 Median 1.3162 1.1066 NaN 1 0 Median 11556000 5715300 5840400 337750 169760 167990 0 0 0 6315000 3294900 3020100 334840 106730 228120 4329900 2038400 2291500 238210 105510 132700 39092 2704 41053 207301;207302;207303;207304;207305;207306;207307 210692;210693;210694;210695;210696 210692 5 YIGEVGDIVVGR ERVNKLICVKALKTRYIGEVGDIVVGRITE KTRYIGEVGDIVVGRITEVQQKRWKVETNS R Y I G R I 0 1 0 1 0 0 1 3 0 2 0 0 0 0 0 0 0 0 1 3 0 0 12 0 1275.6823 Q13868;A3KFL5;A3KFL2;A3KFL1 Q13868 76 87 EXOSC2 Exosome complex component RRP4 yes no 2 7.0623E-05 93.649 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1 1 1.1892 1.0984 5.8768 7 Median 1.1892 1.1132 NaN 1 0 Median 1.3168 1.0952 NaN 1 0 Median 1.1786 1.1221 3.0224 2 0 Median 1.2972 1.0821 NaN 1 0 Median 1.0814 1.1575 NaN 1 0 Median 1.1799 0.96819 NaN 1 0 Median 72945000 33850000 39095000 16032000 7976200 8055500 7179900 2940600 4239300 39447000 18512000 20935000 7067200 2954800 4112500 2899000 1298400 1600600 319470 167350 152120 39093 2843 41054 207308;207309;207310;207311;207312;207313;207314 210697;210698;210699;210700;210701;210702;210703 210700 7 YIGNMHGNEVVGR SDNPGVHEPGEPEFKYIGNMHGNEVVGREL FKYIGNMHGNEVVGRELLLNLIEYLCKNFG K Y I G R E 0 1 2 0 0 0 1 3 1 1 0 0 1 0 0 0 0 0 1 2 0 0 13 0 1444.6881 O75976 O75976 559 571 CPD Carboxypeptidase D yes yes 2;3 3.8838E-07 109.42 By MS/MS By MS/MS 2 2 1.2428 1.1154 21.57 4 Median 1.1538 1.0874 25.389 2 0 Median 1.3628 1.155 26.738 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27971000 13631000 14340000 15683000 8039200 7643700 12288000 5592200 6695900 0 0 0 0 0 0 0 0 0 0 0 0 39094 1714 41055 207315;207316;207317;207318 210704;210705;210706;210707;210708;210709;210710;210711 210706 8 YIGTGHADTTKWEWLVNQHR DRYTIHSQLEHLQSKYIGTGHADTTKWEWL HADTTKWEWLVNQHRDSYCSYMGHFDLLNY K Y I H R D 1 1 1 1 0 1 1 2 2 1 1 1 0 0 0 0 3 2 1 1 0 0 20 1 2411.1771 Q9BWJ5 Q9BWJ5 18 37 SF3B5 Splicing factor 3B subunit 5 yes yes 3;4;5 8.3717E-09 63.918 By MS/MS By matching 3 1 0.99027 1.0294 10.544 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0657 1.1054 9.5977 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4249 1.143 NaN 1 0 Median 18700000 8637500 10063000 0 0 0 0 0 0 17993000 8373500 9619700 0 0 0 0 0 0 707070 264090 442970 39095 3873 41056 207319;207320;207321;207322 210712;210713;210714;210715 210712 4 YIHLENLLAR QTDPMIMLKQTQPERYIHLENLLARSYFDP TQPERYIHLENLLARSYFDPREAYPDGSSK R Y I A R S 1 1 1 0 0 0 1 0 1 1 3 0 0 0 0 0 0 0 1 0 0 0 10 0 1240.6928 Q2TAY7 Q2TAY7 114 123 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2;3 0.00010386 94.85 By matching By matching By MS/MS By MS/MS By MS/MS By matching 2 1 5 3 4 3 1.2153 1.12 17.971 18 Median 1.529 1.5211 41.817 2 0 Median 1.4664 1.3081 NaN 1 0 Median 1.0631 1.0789 14.625 5 0 Median 1.2676 1.0918 1.4457 3 0 Median 1.0668 1.0904 11.855 4 0 Median 1.2937 1.1313 12.282 3 0 Median 68958000 31147000 37811000 2759100 1041300 1717800 226090 116610 109480 47009000 21402000 25606000 4432200 1954500 2477700 13814000 6313400 7500900 717520 318560 398950 39096 3005 41057 207323;207324;207325;207326;207327;207328;207329;207330;207331;207332;207333;207334;207335;207336;207337;207338;207339;207340 210716;210717;210718;210719;210720;210721;210722;210723;210724;210725;210726;210727;210728;210729;210730 210718 15 YIHPDDELVLEDELQR VSEEHNLLPQPPRSKYIHPDDELVLEDELQ IHPDDELVLEDELQRIKLKGTIDVSKLVTG K Y I Q R I 0 1 0 3 0 1 3 0 1 1 3 0 0 0 1 0 0 0 1 1 0 0 16 0 1982.9585 F8W8R3;A0A087WWF6;P49005;C9IZD2;C9J8Z7;C9JLE1 F8W8R3 126 141 POLD2 DNA polymerase delta subunit 2 yes no 3 1.6474E-08 81.619 By MS/MS 2 0.77801 0.77231 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77801 0.77231 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7654700 3745900 3908800 0 0 0 0 0 0 7654700 3745900 3908800 0 0 0 0 0 0 0 0 0 39097 58 41058 207341;207342 210731;210732 210732 2 YIHSADIIHR DHVQFLIYQILRGLKYIHSADIIHRDLKPS LRGLKYIHSADIIHRDLKPSNLAVNEDCEL K Y I H R D 1 1 0 1 0 0 0 0 2 3 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1223.6411 Q16539;B4E0K5;E7EX54;B5TY33 Q16539 140 149 MAPK14 Mitogen-activated protein kinase 14 yes no 3 0.00072588 59.426 By MS/MS By MS/MS By matching 1 1 1 1.1536 1.1568 61.034 3 Median 1.1536 1.1568 NaN 1 0 Median 1.3666 1.1708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.38155 0.40438 NaN 1 0 Median NaN NaN NaN 0 0 Median 4790900 2096700 2694200 2518200 1079000 1439200 2015900 843990 1171900 0 0 0 0 0 0 256750 173700 83055 0 0 0 39098 2987 41059 207343;207344;207345 210733;210734;210735 210733 3 YIHSANVLHR DHICYFLYQILRGLKYIHSANVLHRDLKPS LRGLKYIHSANVLHRDLKPSNLLLNTTCDL K Y I H R D 1 1 1 0 0 0 0 0 2 1 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1208.6414 P27361;E9PJF0;E9PQW4;E9PBK7;B3KR49;H0YDH9;K7ELV1;K7EN18;P31152;Q16659;P28482 P28482 139 148 MAPK3;MAPK4;MAPK6;MAPK1 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6;Mitogen-activated protein kinase 1 no no 2;3 0.000122 120.76 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 3 3 1 1 1 1.0915 1.0582 27.289 12 Median 1.0609 0.93299 21.616 3 1 Plateau 1.2489 1.058 30.012 3 0 Plateau 1.0611 1.0225 16.175 3 0 Median 1.2718 1.1158 NaN 1 0 Median 1.362 1.4565 NaN 1 0 Median 1.5284 1.3252 NaN 1 0 Median 37212000 18539000 18673000 8421200 4500000 3921300 12448000 6235400 6212500 12176000 6020000 6156300 1900600 865940 1034700 1585500 623790 961750 680170 294090 386070 39099 2166;2153 41060 207346;207347;207348;207349;207350;207351;207352;207353;207354;207355;207356;207357;207358 210736;210737;210738;210739;210740;210741;210742;210743;210744;210745;210746;210747;210748;210749;210750;210751 210745 16 YIIEELNVR HQDPEALKDIKSLEKYIIEELNVRKVTLST IKSLEKYIIEELNVRKVTLSTDKNKYGIRL K Y I V R K 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1147.6237 P41252;A0A0A0MSX9;J3KR24 P41252 869 877 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.06407 27.254 By matching By matching By MS/MS By matching 2 1 1 1 1.0615 1.0241 11.227 5 Median NaN NaN NaN 0 0 Median 1.1214 1.0773 17.463 2 0 Median NaN NaN NaN 0 0 Median 1.0615 0.92485 NaN 1 0 Median 1.032 1.1027 NaN 1 0 Median 1.2112 1.0241 NaN 1 0 Median 15627000 4501400 11125000 0 0 0 14091000 3791100 10300000 0 0 0 63115 27724 35391 1295300 603710 691620 176880 78841 98042 39100 2302 41061 207359;207360;207361;207362;207363 210752 210752 1 YIIEELNVRK HQDPEALKDIKSLEKYIIEELNVRKVTLST KSLEKYIIEELNVRKVTLSTDKNKYGIRLR K Y I R K V 0 1 1 0 0 0 2 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 10 1 1275.7187 P41252;A0A0A0MSX9;J3KR24 P41252 869 878 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 2 0.025216 47.823 By MS/MS 1 1.1857 1.2343 NaN 1 Median 1.1857 1.2343 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6247100 3198400 3048700 6247100 3198400 3048700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39101 2302 41062 207364 210753 210753 1 YIIGMLER YGRCHEEIGPFTDTRYIIGMLERCTDKLER GPFTDTRYIIGMLERCTDKLERDRLILFLN R Y I E R C 0 1 0 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 1 0 0 0 8 0 993.53174 O75165 O75165 896 903 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.021359 45.718 By MS/MS By matching By matching 1 1 1 1.4174 1.1759 20.02 3 Median 1.0841 1.0887 NaN 1 0 Median 1.4174 1.1759 NaN 1 0 Median 1.4268 1.5901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3757600 1481700 2275900 1590500 731600 858900 1372100 543440 828660 795020 206660 588360 0 0 0 0 0 0 0 0 0 39102 1653 41063 207365;207366;207367 210754 210754 1 YIIHKYPSLELER ACFQKSGASVVAIRKYIIHKYPSLELERRG RKYIIHKYPSLELERRGYLLKQALKRELNR K Y I E R R 0 1 0 0 0 0 2 0 1 2 2 1 0 0 1 1 0 0 2 0 0 0 13 1 1659.8984 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 186 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3;4 0.00016529 71.607 By MS/MS 2 0.78012 0.85916 8.7343 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78012 0.85916 8.7343 2 0 Median NaN NaN NaN 0 0 Median 16820000 9511700 7308600 0 0 0 0 0 0 0 0 0 0 0 0 16820000 9511700 7308600 0 0 0 39103 3075 41064 207368;207369 210755;210756;210757;210758 210758 4 YIIIGDMGVGK ______________________________ YIFKYIIIGDMGVGKSCLLHQFTEKKFMAD K Y I G K S 0 0 0 1 0 0 0 3 0 3 0 1 1 0 0 0 0 0 1 1 0 0 11 0 1164.6213 P61106;X6RFL8 P61106 14 24 RAB14 Ras-related protein Rab-14 yes no 2 0.00019545 75.378 By MS/MS By matching By matching By matching 2 2 1 1 1.4518 1.2125 32.509 6 Median 1.4205 1.343 36.473 2 0 Median 1.8978 1.6283 53.635 2 0 Median 1.1707 1.1048 NaN 1 0 Median 1.6032 1.3193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 50900000 24711000 26188000 42373000 21098000 21275000 2736600 1112200 1624500 5363500 2346700 3016800 426400 154210 272190 0 0 0 0 0 0 39104 2545 41065 207370;207371;207372;207373;207374;207375 210759 210759 1 YIIIGDTGVGK ______________________________ YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV K Y I G K S 0 0 0 1 0 0 0 3 0 3 0 1 0 0 0 0 1 0 1 1 0 0 11 0 1134.6285 P61019;E9PKL7;E9PE37;H0YD31;Q8WUD1;A0A3B3ITL1 P61019 9 19 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B no no 2 0.00020505 101.9 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.2119 1.1068 18.287 5 Median 1.1094 1.0243 NaN 1 0 Median 1.5831 1.324 25.338 2 0 Median 1.0734 1.0239 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2119 1.2455 NaN 1 0 Median NaN NaN NaN 0 0 Median 65905000 28527000 37379000 55328000 24140000 31188000 6067100 2288000 3779100 3192000 1424500 1767500 0 0 0 1318500 673960 644540 0 0 0 39105 2537;3489 41066 207376;207377;207378;207379;207380 210760;210761;210762;210763;210764;210765;210766 210761 7 YIKDYMK HHLQETSFTKEAYKKYIKDYMKSIKGKLEE FTKEAYKKYIKDYMKSIKGKLEEQRPERVK K Y I M K S 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 0 0 0 2 0 0 0 7 1 959.47864 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7;Q9HAU6 Q5W0H4 91 97 TPT1;TPT1P8 Translationally-controlled tumor protein;Putative translationally-controlled tumor protein-like protein TPT1P8 yes no 2 0.035637 88.942 By MS/MS By MS/MS By matching 1 1 1 1.1035 1.0904 16.375 3 Median 1.2628 1.2843 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.097 1.0904 NaN 1 0 Median 1.1035 0.92559 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33455000 14931000 18523000 8861400 3779800 5081500 0 0 0 24265000 11003000 13262000 328330 148790 179540 0 0 0 0 0 0 39106 222 41067 207381;207382;207383 210767;210768 210767 2 YILAATLDNTLK DNPPVSFVKFSPNGKYILAATLDNTLKLWD NGKYILAATLDNTLKLWDYSKGKCLKTYTG K Y I L K L 2 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1334.7446 P61964 P61964 228 239 WDR5 WD repeat-containing protein 5 yes yes 2 0.00029009 144.77 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 2 1 2 1.0978 1.0227 4.7925 7 Median 1.095 1.0227 NaN 1 0 Median 1.2368 1.059 NaN 1 0 Median 1.0344 1.0316 2.4962 2 0 Median 1.2325 1.0482 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1341 0.94639 0.62594 2 0 Median 63248000 29128000 34120000 5766000 2684400 3081600 4907400 2146400 2761000 36643000 17268000 19375000 7433100 3324500 4108600 0 0 0 8497800 3704900 4792800 39107 2564 41068 207384;207385;207386;207387;207388;207389;207390 210769;210770;210771;210772;210773;210774;210775 210769 7 YILATLLK IGGGSIRIHNAELQRYILATLLKEDVKMLS HNAELQRYILATLLKEDVKMLSHLLQALDY R Y I L K E 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 0 1 0 1 0 0 0 8 0 933.5899 Q6PI48;A0A3B3ISK7;A0A3B3IT01;A0A3B3IS01 Q6PI48 551 558 DARS2 Aspartate--tRNA ligase, mitochondrial yes no 2 0.044676 35.88 By matching By matching By MS/MS By matching 1 2 1 1 1.063 1.0816 26.556 5 Median 0.98176 0.94582 NaN 1 0 Median 1.3677 1.1971 33.267 2 0 Median 1.0505 1.0816 NaN 1 0 Median 1.9278 1.6569 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14894000 6624400 8269300 2667200 1254800 1412400 3450300 1364600 2085800 7828000 3690800 4137300 948110 314200 633900 0 0 0 0 0 0 39108 3171 41069 207391;207392;207393;207394;207395 210776 210776 1 YILDKIDKEEK REENQRMIVCNQVMKYILDKIDKEEKQAAK QVMKYILDKIDKEEKQAAKKRKREESVEQK K Y I E K Q 0 0 0 2 0 0 2 0 0 2 1 3 0 0 0 0 0 0 1 0 0 0 11 2 1392.75 Q12830;A0A2R8Y7Q1;E7ETD6;E9PE19;J3QQQ8;J3KSK9 Q12830 2703 2713 BPTF Nucleosome-remodeling factor subunit BPTF yes no 2;3 5.3806E-05 113.69 By MS/MS By MS/MS 3 2 0.89771 1.1146 24.277 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89771 1.1146 23.917 3 0 Median 0.96042 1.0613 34.564 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31766000 16196000 15570000 0 0 0 0 0 0 29380000 15186000 14194000 2385500 1010000 1375500 0 0 0 0 0 0 39109 2762 41070 207396;207397;207398;207399;207400 210777;210778;210779;210780;210781 210778 5 YILDYLR SKGRFFLDRDGFLFRYILDYLRDLQLVLPD DRDGFLFRYILDYLRDLQLVLPDYFPERSR R Y I L R D 0 1 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 2 0 0 0 7 0 954.51747 Q96CX2;Q68DU8 Q96CX2 91 97 KCTD12;KCTD16 BTB/POZ domain-containing protein KCTD12;BTB/POZ domain-containing protein KCTD16 yes no 2 0.037371 46.37 By MS/MS By matching By matching By matching By matching 1 2 1 1 1 1.6448 1.5663 41.822 6 Median 0.89882 0.89094 NaN 1 0 Median 2.2414 1.9253 38.473 2 0 Median 0.76742 0.90123 NaN 1 0 Median 2.2864 1.9314 NaN 1 0 Median 1.6286 1.6726 NaN 1 0 Median NaN NaN NaN 0 0 Median 12066000 4617000 7449100 5381500 2671500 2709900 4130700 1060700 3070000 1991100 680230 1310800 214430 63143 151290 348430 141400 207020 0 0 0 39110 3623 41071 207401;207402;207403;207404;207405;207406 210782 210782 1 YILDYPLGDK QSEPARVQCRQVFLKYILDYPLGDKLRPNL QVFLKYILDYPLGDKLRPNLEFMLAQLNYE K Y I D K L 0 0 0 2 0 0 0 1 0 1 2 1 0 0 1 0 0 0 2 0 0 0 10 0 1195.6125 O75691 O75691 2271 2280 UTP20 Small subunit processome component 20 homolog yes yes 2 0.017044 38.086 By matching By MS/MS 1 1 0.67872 0.70578 68.159 2 Median 0.44784 0.43587 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0286 1.1428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9012900 3994600 5018300 7243500 3135200 4108200 0 0 0 1769400 859370 910060 0 0 0 0 0 0 0 0 0 39111 1691 41072 207407;207408 210783 210783 1 YILPDEPAIIVHPNWAAK RKRQEEIERQRRERRYILPDEPAIIVHPNW PDEPAIIVHPNWAAKSGKFDCSIMSLSVLL R Y I A K S 3 0 1 1 0 0 1 0 1 3 1 1 0 0 3 0 0 1 1 1 0 0 18 0 2046.0938 Q8IX12;A0A0C4DGG8;F5H1H2;F5H2E6;H0YFJ7 Q8IX12 721 738 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes no 2 0.0032483 30.872 By MS/MS 1 0.48194 0.51785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.48194 0.51785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7110900 4712400 2398500 0 0 0 0 0 0 7110900 4712400 2398500 0 0 0 0 0 0 0 0 0 39112 3331 41073 207409 210784 210784 1 YILSDSSPAPEFPLAYLTSENR DGNIVSPSEIQAHLKYILSDSSPAPEFPLA PAPEFPLAYLTSENRDIWAELRQKLMSSGN K Y I N R D 2 1 1 1 0 0 2 0 0 1 3 0 0 1 3 4 1 0 2 0 0 0 22 0 2469.2064 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75 A0A1B0GTB8 275 296 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2 0.00083591 27.335 By MS/MS 1 0.57939 0.5883 NaN 1 Median 0.57939 0.5883 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1333800 666250 667500 1333800 666250 667500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39113 317 41074 207410 210785;210786 210785 2 YILSSGK DGAEVCSAIFSKNSKYILSSGKDSVAKLWE AIFSKNSKYILSSGKDSVAKLWEISTGRTL K Y I G K D 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 0 0 1 0 0 0 7 0 766.4225 Q05048;A0A0A0MSZ9 Q05048 320 326 CSTF1 Cleavage stimulation factor subunit 1 yes no 1 0.029291 32.47 By MS/MS 1 0.84026 0.87413 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84026 0.87413 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 802290 435290 367000 0 0 0 0 0 0 802290 435290 367000 0 0 0 0 0 0 0 0 0 39114 2716 41075 207411 210787 210787 1 YILSSGKDSVAK DGAEVCSAIFSKNSKYILSSGKDSVAKLWE NSKYILSSGKDSVAKLWEISTGRTLVRYTG K Y I A K L 1 0 0 1 0 0 0 1 0 1 1 2 0 0 0 3 0 0 1 1 0 0 12 1 1266.682 Q05048;A0A0A0MSZ9 Q05048 320 331 CSTF1 Cleavage stimulation factor subunit 1 yes no 3 0.001427 43.501 By MS/MS 1 1.6177 1.5366 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6177 1.5366 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2052600 840310 1212300 0 0 0 0 0 0 0 0 0 2052600 840310 1212300 0 0 0 0 0 0 39115 2716 41076 207412 210788 210788 1 YILVTGGVISGIGK ______________________________ KYILVTGGVISGIGKGIIASSVGTILKSCG K Y I G K G 0 0 0 0 0 0 0 4 0 3 1 1 0 0 0 1 1 0 1 2 0 0 14 0 1375.8075 P17812;A0A3B3IRI2;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3ITB8;A0A3B3ITH9;Q9NRF8 P17812 3 16 CTPS1;CTPS2 CTP synthase 1;CTP synthase 2 no no 2 0.00026924 74.944 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2461 1.1764 9.6349 4 Median 1.3242 1.2596 NaN 1 0 Median 1.227 1.0548 NaN 1 0 Median 1.2026 1.2774 NaN 1 0 Median 1.2656 1.0988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12444000 5154800 7289000 7006900 2940800 4066100 3209700 1350700 1859000 2069100 797480 1271700 158090 65865 92222 0 0 0 0 0 0 39116 2046;4080 41077 207413;207414;207415;207416 210789;210790;210791 210790 3 YIMLNPSSR TWLVSWTENIQGSIKYIMLNPSSRIKGEKD IQGSIKYIMLNPSSRIKGEKDWQKYETARR K Y I S R I 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 1 0 0 0 9 0 1079.5434 P11387 P11387 426 434 TOP1 DNA topoisomerase 1 yes yes 2 0.00058288 112.17 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 4 4 2 5 1.2783 1.1053 21.059 14 Median NaN NaN NaN 0 0 Median 1.5818 1.3896 NaN 1 1 Median 0.93204 0.98536 0.21942 2 1 Median 1.2943 1.108 8.1497 4 1 Median 0.96265 0.99631 15.259 2 0 Median 1.3728 1.1784 29.587 5 0 Median 176750000 84794000 91954000 0 0 0 1503200 577370 925790 104100000 52882000 51217000 34879000 15257000 19622000 13612000 6679500 6932300 22654000 9398200 13256000 39117 1962 41078;41079 207417;207418;207419;207420;207421;207422;207423;207424;207425;207426;207427;207428;207429;207430;207431;207432 210792;210793;210794;210795;210796;210797;210798;210799;210800;210801;210802;210803;210804;210805;210806;210807;210808;210809;210810;210811;210812;210813 210802 739 22 YIMVPSGNMGVFDPTEIHNR IFLLNLPVATWNIYRYIMVPSGNMGVFDPT SGNMGVFDPTEIHNRGQLKSHMKEAMIKLG R Y I N R G 0 1 2 1 0 0 1 2 1 2 0 0 2 1 2 1 1 0 1 2 0 0 20 0 2276.0718 A6NLH6;Q9P003 A6NLH6 85 104 CNIH4 Protein cornichon homolog 4 yes no 2;3 3.4448E-14 103.1 By MS/MS By MS/MS By MS/MS 11 5 5 0.84633 0.78739 14.058 21 Median 0.81161 0.78739 12.471 11 0 Median 0.89584 0.75143 9.1114 5 0 Median 0.85684 0.86866 17.398 5 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 191450000 99718000 91728000 153340000 80567000 72773000 20469000 10016000 10453000 17638000 9134900 8502700 0 0 0 0 0 0 0 0 0 39118 526 41080;41081;41082 207433;207434;207435;207436;207437;207438;207439;207440;207441;207442;207443;207444;207445;207446;207447;207448;207449;207450;207451;207452;207453 210814;210815;210816;210817;210818;210819;210820;210821;210822;210823;210824;210825;210826;210827;210828;210829;210830 210822 211;212 17 YINENLIVNTDELGR SVISGYRLACKEAVRYINENLIVNTDELGR YINENLIVNTDELGRDCLINAAKTSMSSKI R Y I G R D 0 1 3 1 0 0 2 1 0 2 2 0 0 0 0 0 1 0 1 1 0 0 15 0 1761.8897 P17987;E7ERF2;F5H136;F5H7Y1 P17987 131 145 TCP1 T-complex protein 1 subunit alpha yes no 2 1.7214E-26 197.3 By MS/MS By matching By MS/MS By matching 1 3 1 1 1.1096 1.1103 9.3975 6 Linear 1.0958 1.0275 NaN 1 0 Median 1.1313 0.96727 1.9341 3 0 Plateau 1.1455 1.137 NaN 1 0 Median 0.98212 0.85795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95258000 42762000 52497000 60602000 27231000 33371000 11017000 4902400 6114600 23278000 10455000 12823000 361020 172650 188370 0 0 0 0 0 0 39119 2051 41083 207454;207455;207456;207457;207458;207459 210831;210832;210833;210834 210834 4 YINVGDLAR KTTLGKELASKSGLKYINVGDLAREGVIMR SKSGLKYINVGDLAREGVIMRRN_______ K Y I A R E 1 1 1 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1019.54 A0A087WY94;A0A087WVD7;Q9Y3D8 A0A087WY94 31 39 TAF9;AK6 Adenylate kinase isoenzyme 6 yes no 2 0.0010057 92.439 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.1929 0.99108 25.068 5 Median 1.1977 1.1377 NaN 1 1 Median 1.1258 0.94614 6.5623 2 1 Median 1.756 1.6875 NaN 1 0 Median 1.1673 0.96354 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34082000 15196000 18886000 22043000 10887000 11155000 3035400 1171900 1863500 8074500 2752800 5321700 929270 384330 544940 0 0 0 0 0 0 39120 42 41084 207460;207461;207462;207463;207464 210835;210836;210837;210838;210839 210835 5 YIPFTHGK CITMKRQIKHMIKYRYIPFTHGKRRYRGKE KHMIKYRYIPFTHGKRRYRGKEDAGKAFAS R Y I G K R 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 0 8 0 961.50215 O15258 O15258 174 181 RER1 Protein RER1 yes yes 2 0.055228 50.127 By MS/MS 1 1.1379 1.0065 NaN 1 Median NaN NaN NaN 0 0 Median 1.1379 1.0065 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11031000 5288900 5742500 0 0 0 11031000 5288900 5742500 0 0 0 0 0 0 0 0 0 0 0 0 39121 1533 41085 207465 210840 210840 1 YIPHSSATESASASETLR EQKRIAIQGIITAIKYIPHSSATESASASE HSSATESASASETLRNANRPSTSQAARVEI K Y I L R N 3 1 0 0 0 0 2 0 1 1 1 0 0 0 1 5 2 0 1 0 0 0 18 0 1905.9068 Q6NSI4 Q6NSI4 561 578 CXorf57 Uncharacterized protein CXorf57 yes yes 3 2.9098E-05 47.568 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.89176 0.94481 25.341 4 Median 0.65294 0.63948 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.87864 0.93426 NaN 1 0 Median 1.3632 1.1748 NaN 1 0 Median 0.90507 0.95549 NaN 1 0 Median NaN NaN NaN 0 0 Median 19451000 8403400 11047000 2625300 794450 1830800 0 0 0 7907400 3468800 4438500 5241400 2191800 3049700 3676500 1948400 1728200 0 0 0 39122 3141 41086 207466;207467;207468;207469 210841;210842;210843;210844;210845;210846 210846 6 YIPLPQR GSGRESPSLASREGKYIPLPQRVREGPRGG SLASREGKYIPLPQRVREGPRGGVRCSSSR K Y I Q R V 0 1 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 7 0 885.50724 Q8WWM7;H3BUF6;H3BSK9 Q8WWM7 349 355 ATXN2L Ataxin-2-like protein yes no 2 0.02182 58.661 By MS/MS 1 1.0435 1.0198 NaN 1 Median 1.0435 1.0198 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2782300 1424000 1358300 2782300 1424000 1358300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39123 3511 41087 207470 210847 210847 1 YIPPHLR NSSDNQSGGSTASRRYIPPHLRNREATKGF GGSTASRRYIPPHLRNREATKGFYDKDSSG R Y I L R N 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 0 7 0 894.50757 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;F6S8Q4;A0A2R8YDH3;O15523;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;C9J8G5;A0A087WX09;C9J081;A0A2R8Y770 A0A2U3TZJ9 37 43 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.01617 69.39 By MS/MS By MS/MS By matching 1 1 1 0.68698 0.61798 5.0397 3 Median 0.64315 0.63231 NaN 1 0 Median 0.71425 0.61798 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.68698 0.57417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14981000 8599400 6381600 3831600 2297600 1534100 9961100 5664300 4296800 0 0 0 1188300 637540 550740 0 0 0 0 0 0 39124 263 41088 207471;207472;207473 210848;210849;210850;210851 210851 4 YIPVEDLQDPR VYRYDGVHFSVNDSKYIPVEDLQDPRCHVR NDSKYIPVEDLQDPRCHVRSKNRDFSLPVP K Y I P R C 0 1 0 2 0 1 1 0 0 1 1 0 0 0 2 0 0 0 1 1 0 0 11 0 1343.6721 O15047 O15047 54 64 SETD1A Histone-lysine N-methyltransferase SETD1A yes yes 2 0.00065281 65.305 By MS/MS 1 0.36509 0.40026 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.36509 0.40026 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7419300 5634000 1785300 0 0 0 0 0 0 7419300 5634000 1785300 0 0 0 0 0 0 0 0 0 39125 1516 41089 207474 210852 210852 1 YIQAEPPTNK QFDNVRLWLGKNYKKYIQAEPPTNKSLSSL KNYKKYIQAEPPTNKSLSSLVVQLLQFQEE K Y I N K S 1 0 1 0 0 1 1 0 0 1 0 1 0 0 2 0 1 0 1 0 0 0 10 0 1159.5873 Q8TAQ2;F8VXC8;F8VZW6 Q8TAQ2 38 47 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2 0.0065663 63.419 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 0.65454 0.64584 22.155 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.54539 0.58484 NaN 1 0 Median 0.78552 0.7132 NaN 1 0 Median 0.43559 0.46176 NaN 1 1 Median 0.87796 0.75245 NaN 1 1 Median 12640000 7596600 5043600 0 0 0 0 0 0 7704400 4602500 3101800 1544700 803130 741550 1970300 1467300 502940 1420900 723570 697310 39126 3455 41090 207475;207476;207477;207478 210853;210854;210855 210855 3 YIQDFQR LSKKYKELPEKKKMKYIQDFQREKQEFERN LPEKKKMKYIQDFQREKQEFERNLARFRED K Y I Q R E 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 968.47158 P17480;E9PKP7;E9PMM2 P17480 161 167 UBTF Nucleolar transcription factor 1 yes no 2 0.0045798 100.07 By MS/MS By MS/MS By MS/MS 1 1 1 1.0736 0.96699 13.981 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0736 1.1464 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.85625 0.86881 NaN 1 0 Median 1.197 0.96699 NaN 1 0 Median 22942000 10900000 12042000 0 0 0 0 0 0 2265500 1050300 1215200 0 0 0 14410000 7043900 7366500 6266400 2806100 3460300 39127 2040 41091 207479;207480;207481 210856;210857;210858;210859 210859 4 YIQEAEMLR KLFDYSKPSAKRAFKYIQEAEMLRSISFHP AKRAFKYIQEAEMLRSISFHPSGDFILVGT K Y I L R S 1 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 9 0 1151.5645 Q05048;A0A0A0MSZ9 Q05048 213 221 CSTF1 Cleavage stimulation factor subunit 1 yes no 2 0.00042628 129.47 By matching By MS/MS By MS/MS 1 3 2 1.0343 1.0036 8.8741 6 Median NaN NaN NaN 0 0 Median 1.0299 0.92428 NaN 1 0 Median 0.98262 0.94652 6.7732 3 0 Median 1.2996 1.1161 2.2381 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 229050000 108380000 120680000 0 0 0 990030 418280 571750 134360000 66568000 67797000 93700000 41391000 52309000 0 0 0 0 0 0 39128 2716 41092;41093 207482;207483;207484;207485;207486;207487 210860;210861;210862 210861 1407 3 YIQELWR ______________________________ ______________________________ K Y I W R K 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 7 0 1006.5236 P61313;A0A2R8YEM3;E7EQV9;E7ENU7;E7EX53;A0A2R8Y738 P61313 6 12 RPL15 60S ribosomal protein L15;Ribosomal protein L15 yes no 2 0.0020572 126.24 By MS/MS By MS/MS By MS/MS By matching By MS/MS 4 5 1 2 1 1.1707 1.039 15.765 13 Median 1.1596 1.0944 8.6696 4 2 Median 1.2348 1.027 19.417 5 3 Median 1.0255 0.98454 NaN 1 0 Median 1.2333 1.0329 29.512 2 0 Median 1.1707 1.1946 NaN 1 0 Median NaN NaN NaN 0 0 Median 476690000 218020000 258660000 211490000 97058000 114440000 38919000 17744000 21175000 45461000 21684000 23777000 10937000 5036600 5900100 169870000 76499000 93375000 0 0 0 39129 2555 41094 207488;207489;207490;207491;207492;207493;207494;207495;207496;207497;207498;207499;207500 210863;210864;210865;210866;210867;210868;210869;210870;210871;210872;210873;210874;210875;210876 210870 14 YIQHTYR KISFRVNREIVSGMKYIQHTYRKGVKIDKT REIVSGMKYIQHTYRKGVKIDKTDYMVGSY K Y I Y R K 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 2 0 0 0 7 0 979.48756 J3KTF8;J3QQX2;P52565;J3KRY1 J3KTF8 128 134 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2 0.010689 81.635 By MS/MS By MS/MS By MS/MS 2 2 1 1.2635 1.0913 5.2778 5 Median 1.1112 1.0729 1.6319 2 0 Median 1.3275 1.1315 5.1183 2 0 Median 1.2635 1.1964 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13204000 5901100 7303000 9175900 4272800 4903100 1488800 633350 855490 2539300 994900 1544400 0 0 0 0 0 0 0 0 0 39130 1336 41095 207501;207502;207503;207504;207505 210877;210878;210879;210880;210881;210882 210880 6 YIQNLQGLFALPFGR EVTLSNPKGSQEGTKYIQNLQGLFALPFGR YIQNLQGLFALPFGRTAKPAHIAKVKMKFR K Y I G R T 1 1 1 0 0 2 0 2 0 1 3 0 0 2 1 0 0 0 1 0 0 0 15 0 1735.941 Q14669 Q14669 1669 1683 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0045311 35.959 By MS/MS By MS/MS 3 1 1.0341 1.0911 12.049 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0041 1.0536 14.755 3 0 Median NaN NaN NaN 0 0 Median 1.0651 1.1299 NaN 1 0 Median NaN NaN NaN 0 0 Median 6958700 3430100 3528600 0 0 0 0 0 0 6256700 3114300 3142400 0 0 0 701980 315830 386150 0 0 0 39131 2886 41096 207506;207507;207508;207509 210883;210884;210885 210884 3 YIQPWESEFIDSQR GMSHEEDQLIPNLYRYIQPWESEFIDSQRV RYIQPWESEFIDSQRVWAEYALKRQEAIAQ R Y I Q R V 0 1 0 1 0 2 2 0 0 2 0 0 0 1 1 2 0 1 1 0 0 0 14 0 1796.837 Q6P2Q9 Q6P2Q9 1371 1384 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 2.5062E-08 107.06 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 4 2 3 4 4 1 0.93287 0.89185 29.531 18 Median 0.7912 0.79371 52.961 4 0 Median 1.0651 0.91655 4.2009 2 0 Median 0.81394 0.89399 9.7116 3 1 Median 1.1324 0.99112 15.985 4 0 Median 0.86808 0.90741 18.434 4 0 Median 1.0243 0.84221 NaN 1 0 Median 82262000 43128000 39133000 18108000 9636800 8471400 1476700 663690 813010 42038000 22386000 19652000 2033500 926040 1107400 18140000 9282000 8858300 464660 233170 231480 39132 3157 41097 207510;207511;207512;207513;207514;207515;207516;207517;207518;207519;207520;207521;207522;207523;207524;207525;207526;207527 210886;210887;210888;210889;210890;210891;210892;210893;210894;210895;210896;210897;210898;210899;210900;210901;210902 210891 17 YIQQTKPLTLER SQTGWPRGVTQFGNKYIQQTKPLTLERTIN GNKYIQQTKPLTLERTINLYPLTNYTFGTK K Y I E R T 0 1 0 0 0 2 1 0 0 1 2 1 0 0 1 0 2 0 1 0 0 0 12 1 1488.83 O43809 O43809 24 35 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 1.3243E-06 157.96 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 6 3 2 3 0.926 0.93538 12.301 18 Median 0.88761 0.92454 4.1097 2 0 Median 0.91739 0.84808 0.70689 2 1 Median 0.86906 0.94388 19.775 6 1 Median 1.0741 0.95084 8.5475 3 0 Plateau 0.94606 1.0059 5.6848 2 0 Median 1.1146 0.95611 2.5176 3 0 Plateau 1758200000 905200000 852950000 56679000 30156000 26523000 20904000 10938000 9965500 1033900000 545320000 488540000 492580000 239240000 253340000 112900000 58615000 54282000 41238000 20938000 20301000 39133 1592 41098 207528;207529;207530;207531;207532;207533;207534;207535;207536;207537;207538;207539;207540;207541;207542;207543;207544;207545 210903;210904;210905;210906;210907;210908;210909;210910;210911;210912;210913;210914;210915;210916;210917;210918;210919;210920;210921;210922;210923;210924;210925;210926;210927;210928;210929;210930;210931;210932;210933;210934;210935;210936 210925 34 YISELAITTRPHQIIMPSAIER YERMDTIDQDDELIRYISELAITTRPHQII TTRPHQIIMPSAIERSVRKQNVQFMHNRMQ R Y I E R S 2 2 0 0 0 1 2 0 1 5 1 0 1 0 2 2 2 0 1 0 0 0 22 1 2538.3628 Q93008 Q93008 1968 1989 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 1.707E-18 106.73 By MS/MS By matching By matching 1 1 1 0.81746 0.8255 14.488 3 Median 0.76123 0.81407 NaN 1 0 Median 0.81746 0.8255 NaN 1 0 Median 0.83379 1.0533 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25008000 13431000 11577000 22746000 12315000 10432000 428810 187050 241750 1833300 929530 903730 0 0 0 0 0 0 0 0 0 39134 3573 41099 207546;207547;207548 210937 210937 1 YISGSIHYSR DYSRDSFLKDGQPFRYISGSIHYSRVPRFY GQPFRYISGSIHYSRVPRFYWKDRLLKMKM R Y I S R V 0 1 0 0 0 0 0 1 1 2 0 0 0 0 0 3 0 0 2 0 0 0 10 0 1181.5829 E7EQ29;P16278;F8WF40;C9JF15;C9JWX1 E7EQ29 50 59 GLB1 Beta-galactosidase yes no 2 0.00063896 75.378 By MS/MS By MS/MS 2 2 0.7092 0.6991 83.072 2 Median NaN NaN NaN 0 0 Median 0.7092 0.6991 83.072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7012500 2872100 4140500 0 0 0 7012500 2872100 4140500 0 0 0 0 0 0 0 0 0 0 0 0 39135 874 41100 207549;207550;207551;207552 210938;210939;210940;210941 210941 4 YISPDQLADLYK GKYDLDFKSPDDPSRYISPDQLADLYKSFI PSRYISPDQLADLYKSFIKDYPVVSIEDPF R Y I Y K S 1 0 0 2 0 1 0 0 0 1 2 1 0 0 1 1 0 0 2 0 0 0 12 0 1424.7187 P06733;A0A2R8Y6G6 P06733 270 281 ENO1 Alpha-enolase yes no 2 3.0793E-06 157.24 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 9 5 6 2 4 0.99931 0.89031 14.869 26 Median 1.0388 0.96116 7.8515 9 0 Median 1.0092 0.84649 3.6809 5 0 Median 0.84796 0.84916 19.49 6 2 Median 0.9197 0.78755 27.797 2 0 Median 0.88577 0.92991 23.833 4 1 Median NaN NaN NaN 0 0 Median 1696600000 820070000 876500000 793450000 379120000 414330000 552410000 268500000 283910000 255540000 126300000 129240000 66947000 32172000 34775000 28219000 13971000 14248000 0 0 0 39136 1873 41101 207553;207554;207555;207556;207557;207558;207559;207560;207561;207562;207563;207564;207565;207566;207567;207568;207569;207570;207571;207572;207573;207574;207575;207576;207577;207578 210942;210943;210944;210945;210946;210947;210948;210949;210950;210951;210952;210953;210954;210955;210956;210957;210958;210959;210960;210961;210962;210963;210964;210965;210966;210967;210968;210969;210970;210971;210972;210973;210974;210975;210976;210977;210978;210979;210980;210981;210982;210983;210984;210985;210986;210987;210988 210953 47 YISSQIERPIR GENGPVLEVICSRMRYISSQIERPIRIVAL SRMRYISSQIERPIRIVALSSSLSNAKDVA R Y I I R I 0 2 0 0 0 1 1 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 11 1 1360.7463 O75643 O75643 1476 1486 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 8.3285E-21 194.06 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 4 3 3 0.98236 0.97778 23.628 21 Median 0.76324 0.81621 15.601 3 1 Median 1.0334 1.0436 21.573 3 0 Median 0.7469 0.94351 27.299 5 1 Median 1.1739 1.1524 29.512 4 0 Median 0.90387 0.97778 16.987 3 1 Median 1.0075 0.91078 10.78 3 1 Median 320760000 165220000 155540000 33736000 16637000 17100000 39320000 20015000 19305000 130730000 71719000 59013000 44104000 19903000 24201000 43588000 22693000 20896000 29278000 14251000 15028000 39137 1688 41102 207579;207580;207581;207582;207583;207584;207585;207586;207587;207588;207589;207590;207591;207592;207593;207594;207595;207596;207597;207598;207599 210989;210990;210991;210992;210993;210994;210995;210996;210997;210998;210999;211000;211001;211002;211003;211004;211005;211006;211007;211008 210996 20 YITAHGLPPTASALGPGPPPPEPLPGSGPR ATARAFKIIREAYKKYITAHGLPPTASALG PGPPPPEPLPGSGPRALRQKIVIK______ K Y I P R A 3 1 0 0 0 0 1 5 1 1 3 0 0 0 10 2 2 0 1 0 0 0 30 0 2900.5185 Q15906 Q15906 326 355 VPS72 Vacuolar protein sorting-associated protein 72 homolog yes yes 3 6.2049E-06 35.648 By MS/MS 1 0.19807 0.19876 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.19807 0.19876 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4942300 4313400 628960 0 0 0 0 0 0 4942300 4313400 628960 0 0 0 0 0 0 0 0 0 39138 2975 41103 207600 211009 211009 1 YITASTFAQAR GWKAGPEGTSQEIPKYITASTFAQARAAEI EIPKYITASTFAQARAAEISAMLKAVTQKS K Y I A R A 3 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 11 0 1227.6248 Q99575;E5RK39 Q99575 101 111 POP1 Ribonucleases P/MRP protein subunit POP1 yes no 2 0.00014653 83.948 By MS/MS By MS/MS 1 1 1.495 1.5396 7.232 2 Median 1.6803 1.6204 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3301 1.4628 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16440000 6450600 9989300 8805500 3576300 5229200 0 0 0 7634400 2874300 4760100 0 0 0 0 0 0 0 0 0 39139 3754 41104 207601;207602 211010;211011 211011 2 YITDKSEEIAQINLER EDVKLLARRSNSLLKYITDKSEEIAQINLE ITDKSEEIAQINLERKAQKKKKSEDGSKNS K Y I E R K 1 1 1 1 0 1 3 0 0 3 1 1 0 0 0 1 1 0 1 0 0 0 16 1 1920.9793 Q8N2Z9 Q8N2Z9 95 110 APITD1 Centromere protein S yes yes 3 4.2428E-05 53.169 By MS/MS By matching 1 1 0.94419 0.90585 40.996 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1641 1.2105 NaN 1 0 Median 0.7658 0.67789 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6549800 2931600 3618200 0 0 0 0 0 0 6192200 2688800 3503400 357640 242810 114830 0 0 0 0 0 0 39140 3363 41105 207603;207604 211012;211013 211013 2 YITDWQNVFR NKAGVNFSEFTGVWKYITDWQNVFRTYDRD TGVWKYITDWQNVFRTYDRDNSGMIDKNEL K Y I F R T 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 10 0 1340.6513 O75340;A0A024QZ42 O75340 91 100 PDCD6 Programmed cell death protein 6 yes no 2 0.00035707 83.265 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 1 1 1 1 1 1.2143 1.0465 26.073 9 Median 0.98518 0.94456 5.3773 4 0 Median 1.281 1.0621 NaN 1 0 Median 1.2143 1.1567 NaN 1 0 Median 1.3285 1.096 NaN 1 0 Median 2.0244 2.1419 NaN 1 0 Median 1.2165 0.95463 NaN 1 0 Median 68856000 32008000 36848000 52908000 25358000 27549000 7842900 3355500 4487300 3376700 1462000 1914700 826600 348100 478500 3287900 1208100 2079800 614490 275710 338780 39141 1659 41106 207605;207606;207607;207608;207609;207610;207611;207612;207613 211014;211015;211016;211017;211018;211019;211020;211021;211022;211023;211024;211025;211026 211015 13 YITEPEMVFEEHEVNEDIQPMTAFESEK GSYKGKKIASFPTAKYITEPEMVFEEHEVN VNEDIQPMTAFESEKEIELPKEVPEKLPEA K Y I E K E 1 0 1 1 0 1 8 0 1 2 0 1 2 2 2 1 2 0 1 2 0 0 28 0 3370.4897 H0Y8R1;F5H5I6;H0YAK1;Q12849 H0Y8R1 286 313 GRSF1 G-rich sequence factor 1 yes no 3 2.1459E-05 33.265 By MS/MS 1 0.77598 0.76683 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.77598 0.76683 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3936600 2143200 1793400 0 0 0 0 0 0 3936600 2143200 1793400 0 0 0 0 0 0 0 0 0 39142 1035 41107 207614 211027 211027 1 YITGDQLGALYQDFVR GKYDLDFKSPTDPSRYITGDQLGALYQDFV ITGDQLGALYQDFVRDYPVVSIEDPFDQDD R Y I V R D 1 1 0 2 0 2 0 2 0 1 2 0 0 1 0 0 1 0 2 1 0 0 16 0 1857.9261 P09104;F5H0C8;U3KQP4 P09104 270 285 ENO2 Gamma-enolase;Enolase yes no 2 6.6184E-05 77.305 By matching By MS/MS By matching 1 2 1 1.0586 0.96163 5.1928 4 Median 0.99384 0.99501 NaN 1 0 Median 1.0586 0.91377 4.2924 2 0 Median NaN NaN NaN 0 0 Median 1.1161 0.98175 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4151200 1970700 2180500 96208 35336 60872 4006200 1908000 2098200 0 0 0 48770 27335 21435 0 0 0 0 0 0 39143 1911 41108 207615;207616;207617;207618 211028;211029;211030;211031 211031 4 YITLFIEK SEEGNIEHAFILYNKYITLFIEKLPKHRDY AFILYNKYITLFIEKLPKHRDYKSAVIPEK K Y I E K L 0 0 0 0 0 0 1 0 0 2 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1025.5797 O95630;C9JK83;C9JEK5;F5H5B9;C9JZ93 O95630 66 73 STAMBP STAM-binding protein yes no 2 0.047133 35.356 By matching By MS/MS By matching 1 1 1 1.0989 0.98025 19.418 3 Median NaN NaN NaN 0 0 Median 1.0607 0.911 NaN 1 0 Median 1.3218 1.3148 NaN 1 0 Median 1.0989 0.98025 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5170600 2339900 2830700 0 0 0 2125500 982850 1142600 2621500 1163500 1458100 423630 193620 230010 0 0 0 0 0 0 39144 1784 41109 207619;207620;207621 211032 211032 1 YITQNGDYQLR KIIEKSGYQALPWVRYITQNGDYQLRTQ__ PWVRYITQNGDYQLRTQ_____________ R Y I L R T 0 1 1 1 0 2 0 1 0 1 1 0 0 0 0 0 1 0 2 0 0 0 11 0 1369.6626 E7ENJ6;Q9BXS5;K7EJL1 E7ENJ6 358 368 AP1M1 AP-1 complex subunit mu-1 yes no 2 1.3838E-06 164.57 By MS/MS By matching By MS/MS 1 1 1 0.96085 0.9436 1.9892 3 Median 0.94643 0.91849 NaN 1 0 Median 1.0864 0.9436 NaN 1 0 Median 0.96085 0.95485 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15776000 7687200 8088700 6856000 3210700 3645300 1528500 833680 694810 7391400 3642800 3748600 0 0 0 0 0 0 0 0 0 39145 864 41110 207622;207623;207624 211033;211034;211035;211036 211034 4 YIVIEPTR QFEYELEQALEAQYKYIVIEPTRIGDETAR ALEAQYKYIVIEPTRIGDETARWITVGNCL K Y I T R I 0 1 0 0 0 0 1 0 0 2 0 0 0 0 1 0 1 0 1 1 0 0 8 0 989.55458 P17152 P17152 59 66 TMEM11 Transmembrane protein 11, mitochondrial yes yes 2 0.0052175 77.058 By MS/MS By MS/MS 1 1 1.1344 1.0211 10.646 2 Median 0.96957 0.94703 NaN 1 0 Median 1.3271 1.1009 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12419000 6297100 6122300 8037900 4263700 3774200 4381500 2033400 2348100 0 0 0 0 0 0 0 0 0 0 0 0 39146 2037 41111 207625;207626 211037;211038 211038 2 YIVPMLTVDGK PEEMKQLNALNKNWRYIVPMLTVDGKRVPR KNWRYIVPMLTVDGKRVPRDAGHPLYPFND R Y I G K R 0 0 0 1 0 0 0 1 0 1 1 1 1 0 1 0 1 0 1 2 0 0 11 0 1234.6631 P14550 P14550 298 308 AKR1A1 Alcohol dehydrogenase [NADP(+)] yes yes 2 0.0018837 56.563 By MS/MS 1 0.92439 0.86348 NaN 1 Median 0.92439 0.86348 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5975000 3248200 2726800 5975000 3248200 2726800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39147 2004 41112 207627 211039;211040 211040 2 YIVQVDGK GRKVLYLPSFFTYAKYIVQVDGKIGLFRGL SFFTYAKYIVQVDGKIGLFRGLSPRLMSNA K Y I G K I 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 0 920.49673 H0Y8C3;Q9NZJ7 H0Y8C3 122 129 MTCH1 Mitochondrial carrier homolog 1 yes no 2 0.040404 55.676 By MS/MS 1 1.3808 1.1785 NaN 1 Median NaN NaN NaN 0 0 Median 1.3808 1.1785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 996040 468930 527110 0 0 0 996040 468930 527110 0 0 0 0 0 0 0 0 0 0 0 0 39148 1161 41113 207628 211041 211041 1 YIVQVSPLGIR TQGPTVFAGNIGDNRYIVQVSPLGIRLLEG GDNRYIVQVSPLGIRLLEGVNQLHFIPVDL R Y I I R L 0 1 0 0 0 1 0 1 0 2 1 0 0 0 1 1 0 0 1 2 0 0 11 0 1243.7289 Q10570 Q10570 617 627 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.00011552 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 1 3 4 1 2 1.2466 1.1631 24.175 12 Median 1.0267 1.0342 27.409 2 0 Median NaN NaN NaN 0 0 Median 0.84631 0.90669 2.3191 3 0 Median 1.4365 1.2453 9.4827 4 0 Median 0.98247 1.0269 NaN 1 0 Median 2.0424 1.7005 11.134 2 0 Median 121520000 63302000 58219000 3828100 2010600 1817500 0 0 0 112410000 58910000 53504000 3624800 1600300 2024600 1330400 660740 669690 323230 119900 203340 39149 2753 41114 207629;207630;207631;207632;207633;207634;207635;207636;207637;207638;207639;207640;207641 211042;211043;211044;211045;211046;211047;211048;211049;211050;211051;211052;211053 211044 12 YIVTCAVVQK EQSLTHLVKLGKAYKYIVTCAVVQKSAYGF GKAYKYIVTCAVVQKSAYGFHTASSCFWDT K Y I Q K S 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 3 0 0 10 0 1179.6322 A6NGJ0;P51808;F2Z328 A6NGJ0 64 73 DYNLT3 Dynein light chain Tctex-type 3 yes no 2 0.013464 40.002 By MS/MS By matching 1 1 1.8783 1.7232 20.28 2 Median NaN NaN NaN 0 0 Median 2.3732 1.9889 NaN 1 0 Median 1.4866 1.493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3133700 1347100 1786500 0 0 0 1677500 652770 1024700 1456200 694370 761830 0 0 0 0 0 0 0 0 0 39150 513 41115 207642;207643 211054 211054 1 YIYDSAFHPDTGEK IVPPGLTENELWRAKYIYDSAFHPDTGEKM KYIYDSAFHPDTGEKMILIGRMSAQVPMNM K Y I E K M 1 0 0 2 0 0 1 1 1 1 0 1 0 1 1 1 1 0 2 0 0 0 14 0 1641.7311 Q9H9B4;D6RFI0;D6RDG7;S4R2X2 Q9H9B4 73 86 SFXN1 Sideroflexin-1 yes no 2;3 1.2687E-07 123.8 By MS/MS By MS/MS By matching By matching 2 2 1 1 1.0088 0.8805 23.542 6 Median 0.82064 0.74455 4.0982 2 0 Median 1.3586 1.1415 17.093 2 0 Median 0.79289 0.75951 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3019 1.084 NaN 1 0 Median 94665000 47392000 47273000 64605000 34633000 29972000 24837000 10174000 14663000 4734700 2366900 2367800 0 0 0 0 0 0 488840 218110 270740 39151 3998 41116 207644;207645;207646;207647;207648;207649 211055;211056;211057;211058;211059;211060;211061;211062 211055 8 YIYIMGIQER RFHRNLKKMTSPLEKYIYIMGIQERNEKLF SPLEKYIYIMGIQERNEKLFYRILQDDIES K Y I E R N 0 1 0 0 0 1 1 1 0 3 0 0 1 0 0 0 0 0 2 0 0 0 10 0 1284.6536 A0A1W2PPH1;P23368;A0A1W2PQT3;A0A1W2PQH3;A0A1W2PQY8;A0A1W2PR68;A0A1W2PQF8;A0A1W2PQ37;A0A1W2PRS2;A0A1W2PRY9;A0A1W2PQH4;A0A1W2PPY2 A0A1W2PPH1 82 91 ME2 NAD-dependent malic enzyme, mitochondrial yes no 2 0.00034763 84.476 By MS/MS By MS/MS 1 1 1.2947 1.1817 22.814 2 Median 1.0447 1.0057 NaN 1 0 Median 1.6046 1.3886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13256000 6311000 6944700 6725700 3549900 3175800 6529900 2761100 3768800 0 0 0 0 0 0 0 0 0 0 0 0 39152 337 41117 207650;207651 211063;211064 211063 2 YIYYLITK QKKSGEVAVLKRDGRYIYYLITKKRASHKP VLKRDGRYIYYLITKKRASHKPTYENLQKS R Y I T K K 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 1 0 3 0 0 0 8 0 1075.5954 C9JNE2;Q9Y530;C9JXC3 C9JNE2 77 84 OARD1 O-acetyl-ADP-ribose deacetylase 1 yes no 2 0.0078694 65.252 By MS/MS By MS/MS 1 1 1.2404 1.0951 11.373 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.059 1.0105 NaN 1 0 Median 1.4528 1.1868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18126000 8982000 9143600 0 0 0 0 0 0 17340000 8665800 8673800 786030 316210 469820 0 0 0 0 0 0 39153 711 41118 207652;207653 211065;211066;211067;211068 211065 4 YKAEDEVQR LSKEEIERMVQEAEKYKAEDEVQRERVSAK VQEAEKYKAEDEVQRERVSAKNALESYAFN K Y K Q R E 1 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 9 1 1136.5462 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37;Q53FA3;P34931 A0A0G2JIW1 526 534 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like no no 2 0.00035185 149.65 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 3 2 2 2 2 1.2738 1.0859 14.887 13 Plateau 1.1647 1.1801 16.527 2 0 Median 1.2033 1.0859 6.6757 3 0 Plateau 1.2302 1.3285 5.5101 2 0 Median 1.112 1.0571 7.7309 2 0 Median 1.2299 1.3211 2.498 2 0 Median 1.07 0.96012 14.487 2 0 Median 164490000 71742000 92747000 20027000 8211700 11816000 101840000 44958000 56885000 35403000 15382000 20021000 2378200 1039800 1338400 3219400 1432000 1787500 1617300 718050 899280 39154 278;2229 41119 207654;207655;207656;207657;207658;207659;207660;207661;207662;207663;207664;207665;207666 211069;211070;211071;211072;211073;211074;211075 211072 7 YKAEDEVQRER LSKEEIERMVQEAEKYKAEDEVQRERVSAK EAEKYKAEDEVQRERVSAKNALESYAFNMK K Y K E R V 1 2 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 11 2 1421.6899 A0A0G2JIW1;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 526 536 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.0088985 32.523 By MS/MS By matching By MS/MS By MS/MS 3 1 4 2 1.3744 1.4296 20.779 10 Median 1.3727 1.3847 12.399 3 0 Median NaN NaN NaN 0 0 Median 1.5425 1.7305 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3781 1.5443 27.476 4 0 Median 1.3296 1.153 4.7988 2 0 Median 30521000 12875000 17647000 23378000 9954000 13424000 0 0 0 1274200 486320 787910 0 0 0 3881300 1618700 2262600 1987700 815720 1171900 39155 278 41120 207667;207668;207669;207670;207671;207672;207673;207674;207675;207676 211076;211077;211078;211079;211080 211076 5 YKAPFHQLR RRISIKKALDTKIGRYKAPFHQLRISYGTN DTKIGRYKAPFHQLRISYGTNKGKNYTEEE R Y K L R I 1 1 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 9 1 1158.6298 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 928 936 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 0.017385 65.038 By MS/MS By MS/MS 2 1 0.92436 0.9054 22.37 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1051 1.0277 29.896 2 1 Median 0.82322 0.9054 NaN 1 0 Median NaN NaN NaN 0 0 Median 10828000 5957300 4871000 0 0 0 0 0 0 0 0 0 2698700 1323500 1375300 8129600 4633900 3495700 0 0 0 39156 1608;643;167 41121 207677;207678;207679 211081;211082;211083 211082 3 YKASITALEAK LKVKLQEMEGTVKSKYKASITALEAKIAQL VKSKYKASITALEAKIAQLEEQLDNETKER K Y K A K I 3 0 0 0 0 0 1 0 0 1 1 2 0 0 0 1 1 0 1 0 0 0 11 1 1193.6656 P35579 P35579 1805 1815 MYH9 Myosin-9 yes yes 2;3 0.0032221 64.73 By MS/MS 2 1.0492 1.0169 NaN 1 Median 1.0492 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13014000 4450500 8563400 13014000 4450500 8563400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39157 2244 41122 207680;207681 211084;211085;211086 211084 3 YKDAIHFYNK KAYARIGNSYFKEEKYKDAIHFYNKSLAEH FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ K Y K N K S 1 0 1 1 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 0 10 1 1297.6455 P31948 P31948 316 325 STIP1 Stress-induced-phosphoprotein 1 yes yes 2;3 0.00012405 136.57 By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 2 1.1675 1.1088 24.326 11 Median 1.1978 1.1373 17.225 4 0 Median 1.1288 1.0534 12.293 3 0 Plateau 1.5739 1.6599 30.912 2 0 Median 1.1818 1.0912 2.2955 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 158340000 70437000 87901000 73281000 31665000 41615000 76201000 35252000 40948000 3295000 1253100 2041900 5562100 2266300 3295800 0 0 0 0 0 0 39158 2212 41123 207682;207683;207684;207685;207686;207687;207688;207689;207690;207691;207692 211087;211088;211089;211090;211091;211092;211093;211094;211095;211096;211097;211098 211094 12 YKDDPVDLR EMKSPREPGYKAEGKYKDDPVDLRLDIERR YKAEGKYKDDPVDLRLDIERRKKHKERDLK K Y K L R L 0 1 0 3 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 1 1119.556 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 710 718 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 2 0.041206 64.711 By MS/MS 1 1.4218 1.5637 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4218 1.5637 NaN 1 1 Median NaN NaN NaN 0 0 Median 7276300 3233300 4043000 0 0 0 0 0 0 0 0 0 0 0 0 7276300 3233300 4043000 0 0 0 39159 439 41124 207693 211099 211099 1 YKDDPVDLRLDIER EMKSPREPGYKAEGKYKDDPVDLRLDIERR KYKDDPVDLRLDIERRKKHKERDLKRGKSR K Y K E R R 0 2 0 4 0 0 1 0 0 1 2 1 0 0 1 0 0 0 1 1 0 0 14 2 1745.8948 A0A3B3ITZ9;Q9Y2W1 A0A3B3ITZ9 710 723 THRAP3 Thyroid hormone receptor-associated protein 3 yes no 3 0.070287 11.692 By MS/MS 1 1.5069 1.6988 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5069 1.6988 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7256200 3192000 4064200 0 0 0 0 0 0 7256200 3192000 4064200 0 0 0 0 0 0 0 0 0 39160 439 41125 207694 211100 211100 1 YKDEAQLYKEEHLR VLVLCLQQMNSFLSRYKDEAQLYKEEHLRN RYKDEAQLYKEEHLRNRQHPHCYVQYMIAI R Y K L R N 1 1 0 1 0 1 3 0 1 0 2 2 0 0 0 0 0 0 2 0 0 0 14 2 1820.9057 O60645;D6RB59;H0Y995 O60645 465 478 EXOC3 Exocyst complex component 3 yes no 3;4 0.00039924 49.298 By MS/MS By matching By MS/MS By MS/MS By matching 1 2 2 1 1 1.0944 1.2469 21.786 6 Median 1.0062 1.1083 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80854 0.96374 12.375 2 0 Median 1.4332 1.5318 NaN 1 0 Median 1.1904 1.4028 NaN 1 0 Median 1.4157 1.4524 NaN 1 0 Median 16239000 7498600 8740600 4196800 2460100 1736700 0 0 0 6472000 2874900 3597100 2139500 854210 1285300 2596300 1060300 1536000 834600 249010 585590 39161 1623 41126 207695;207696;207697;207698;207699;207700;207701 211101;211102;211103;211104;211105;211106 211105 6 YKDLDEDELLGNLSETELK ______________________________ DEDELLGNLSETELKQLETVLDDLDPENAL K Y K L K Q 0 0 1 3 0 0 4 1 0 0 5 2 0 0 0 1 1 0 1 0 0 0 19 1 2223.0794 Q9NYL9;H0YNU8 Q9NYL9 12 30 TMOD3 Tropomodulin-3 yes no 3 2.7362E-05 45.257 By MS/MS 1 0.43722 0.47644 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43722 0.47644 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13343000 9485500 3857200 0 0 0 0 0 0 13343000 9485500 3857200 0 0 0 0 0 0 0 0 0 39162 4178 41127 207702 211107 211107 1 YKEALLGR QEIQELDKDDESLRKYKEALLGRVAVSADP DDESLRKYKEALLGRVAVSADPNVPNVVVT K Y K G R V 1 1 0 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 8 1 948.53927 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;J3KS60 J3KTF8 51 58 ARHGDIA Rho GDP-dissociation inhibitor 1 yes no 2 0.011145 114.78 By MS/MS By MS/MS By MS/MS By matching 2 2 1 2 1.2031 1.1548 27.112 7 Median 1.4022 1.4287 41.801 2 0 Median 1.2889 1.1638 6.3887 2 0 Median 1.1062 1.1548 NaN 1 0 Median 1.5383 1.4235 43.54 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 93841000 48178000 45663000 72408000 39004000 33404000 9743300 4146900 5596400 10073000 4440400 5632600 1617000 587090 1029900 0 0 0 0 0 0 39163 1336 41128 207703;207704;207705;207706;207707;207708;207709 211108;211109;211110;211111 211108 4 YKEEYAVLISEAQAIK EVEQMIRDLEASIARYKEEYAVLISEAQAI KEEYAVLISEAQAIKADLAAVEAKVNRSTA R Y K I K A 3 0 0 0 0 1 3 0 0 2 1 2 0 0 0 1 0 0 2 1 0 0 16 1 1853.9775 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6H2;H0YJ21 Q14204 3447 3462 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 6.1849E-09 98.942 By MS/MS By matching By matching 3 2 2 1.0575 1.092 25.194 7 Median 0.96581 0.98095 38.035 3 0 Median 1.2559 1.2014 21.912 2 0 Median 1.0079 1.1851 11.57 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 91145000 44727000 46418000 47171000 23472000 23699000 1616600 652040 964570 42357000 20603000 21754000 0 0 0 0 0 0 0 0 0 39164 2865 41129 207710;207711;207712;207713;207714;207715;207716 211112;211113 211112 2 YKENPDIVNQSQQAQAR GDWKTHGSEYYECSRYKENPDIVNQSQQAQ ENPDIVNQSQQAQAREALKKYLFYFERWEN R Y K A R E 2 1 2 1 0 4 1 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 17 1 1987.9712 O95376 O95376 343 359 ARIH2 E3 ubiquitin-protein ligase ARIH2 yes yes 3 8.0031E-06 58.671 By MS/MS By MS/MS 1 1 0.83332 0.79661 6.5423 2 Median 0.7605 0.7606 NaN 1 0 Median 0.91313 0.83433 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5842500 3014600 2828000 3552600 1923100 1629500 2289900 1091500 1198400 0 0 0 0 0 0 0 0 0 0 0 0 39165 1769 41130 207717;207718 211114;211115 211114 2 YKEVAELTR ESPDVRGRLSGIEERYKEVAELTRLRKQAL SGIEERYKEVAELTRLRKQALQDTLALYKM R Y K T R L 1 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 1 1107.5924 Q01082;A0A087WUZ3 Q01082 831 839 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes no 2 0.002359 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 2 1 2 1.065 1.0281 15.129 9 Median 1.1798 1.2054 NaN 1 0 Median 1.3549 1.2736 13.406 2 0 Median 0.85397 1.0234 NaN 1 0 Median 1.0605 1.0056 3.1322 2 0 Median 1.0349 1.1753 NaN 1 0 Median 1.0269 0.90334 11.734 2 0 Median 62840000 28380000 34460000 2089200 829410 1259800 14771000 4540400 10230000 16041000 8353200 7687600 7285100 3551000 3734100 12148000 6193800 5954600 10506000 4912500 5593700 39166 2681 41131 207719;207720;207721;207722;207723;207724;207725;207726;207727 211116;211117;211118;211119;211120;211121;211122;211123;211124;211125;211126;211127 211118 12 YKFEVYEKND YPGVLSDVQEEKGIKYKFEVYEKND_____ EKGIKYKFEVYEKND_______________ K Y K N D - 0 0 1 1 0 0 2 0 0 0 0 2 0 1 0 0 0 0 2 1 0 0 10 2 1333.619 P00374 P00374 178 187 DHFR Dihydrofolate reductase yes yes 2;3 0.0010884 120.33 By MS/MS By MS/MS By matching By matching 2 4 1 1 1.0576 1.0101 12.57 8 Median 0.9552 0.96983 11.047 2 0 Median 1.2731 1.1444 13.613 4 0 Median 0.88739 0.90889 NaN 1 0 Median 1.0824 0.97292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 66207000 30716000 35492000 51847000 24519000 27329000 13375000 5702700 7672700 490810 294740 196070 493850 199660 294190 0 0 0 0 0 0 39167 1815 41132 207728;207729;207730;207731;207732;207733;207734;207735 211128;211129;211130;211131;211132;211133;211134 211133 7 YKGQHVPGSPFQFTVGPLGEGGAHK RFVPAEMGTHTVSVKYKGQHVPGSPFQFTV FQFTVGPLGEGGAHKVRAGGPGLERAEAGV K Y K H K V 1 0 0 0 0 2 1 6 2 0 1 2 0 2 3 1 1 0 1 2 0 0 25 1 2594.303 P21333;H0Y5C6;Q60FE5 P21333 2216 2240 FLNA Filamin-A no no 3;4;5 4.141E-19 78.352 By MS/MS By MS/MS By MS/MS 3 1 1 0.6936 0.80187 25.098 5 Median 0.82361 0.89764 27.395 3 1 Median 0.63501 0.60717 NaN 1 0 Median 0.6936 0.80187 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 72815000 41348000 31467000 45503000 24844000 20658000 19446000 11864000 7581300 7866200 4638800 3227400 0 0 0 0 0 0 0 0 0 39168 2088;3120 41133 207736;207737;207738;207739;207740 211135;211136;211137;211138;211139;211140 211137 6 YKHPSEEELR CSFARWLLCNGSLFRYKHPSEEELRALAGK GSLFRYKHPSEEELRALAGKPRPRGRKERW R Y K L R A 0 1 0 0 0 0 3 0 1 0 1 1 0 0 1 1 0 0 1 0 0 0 10 1 1286.6255 K7EPA3;Q9NX61;K7EQE7;K7EQ34;U3KQT6 K7EPA3 40 49 TMEM161A Transmembrane protein 161A yes no 3 0.0012284 55.314 By MS/MS By MS/MS 2 1 1.25 1.2194 21.787 3 Plateau 0.88779 0.90281 5.0948 2 0 Median 1.3529 1.3099 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2408300 1132600 1275700 856040 473100 382940 1552300 659500 892750 0 0 0 0 0 0 0 0 0 0 0 0 39169 1392 41134 207741;207742;207743 211141;211142;211143 211143 3 YKLDEDEDEDDADLSK ESEGEEEDEDEDLSKYKLDEDEDEDDADLS KLDEDEDEDDADLSKYNLDASEEEDSNKKK K Y K S K Y 1 0 0 6 0 0 3 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 16 1 1898.7905 O95218 O95218 167 182 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 yes yes 2;3 0.00015358 51.841 By MS/MS 4 1.1707 1.2276 18.636 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1707 1.2276 18.636 4 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22782000 9754600 13028000 0 0 0 0 0 0 22782000 9754600 13028000 0 0 0 0 0 0 0 0 0 39170 1755 41135 207744;207745;207746;207747 211144;211145;211146;211147 211145 4 YKLDKESYPVFYLFR ISDYGDKLNMELSEKYKLDKESYPVFYLFR YKLDKESYPVFYLFRDGDFENPVPYTGAVK K Y K F R D 0 1 0 1 0 0 1 0 0 0 2 2 0 2 1 1 0 0 3 1 0 0 15 2 1967.0193 P30040;F8VY02 P30040 108 122 ERP29 Endoplasmic reticulum resident protein 29 yes no 3 0.030489 18.596 By MS/MS By matching By matching 1 1 1 0.98641 1.0503 22.146 3 Median 0.98641 1.0503 NaN 1 0 Median 1.2844 1.1136 NaN 1 0 Median 0.63824 0.73945 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6571400 2943100 3628300 4078700 1910200 2168500 1819500 708120 1111400 673260 324830 348420 0 0 0 0 0 0 0 0 0 39171 2178 41136 207748;207749;207750 211148 211148 1 YKLHYYETPTGIK PLDMKDGFLAFQTSRYKLHYYETPTGIKVV SRYKLHYYETPTGIKVVMNTDLGVGPIRD_ R Y K I K V 0 0 0 0 0 0 1 1 1 1 1 2 0 0 1 0 2 0 3 0 0 0 13 1 1611.8297 I3L3S0;Q9Y5R8 I3L3S0 69 81 TRAPPC1 Trafficking protein particle complex subunit 1 yes no 3 0.00010269 77.078 By matching By MS/MS By matching 1 1 1 1.0579 0.91712 13.829 3 Median 0.89086 0.89012 NaN 1 0 Median 1.0579 0.91712 NaN 1 0 Median 1.1196 1.1464 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18353000 8650300 9702400 9207900 4434300 4773600 7107700 3454800 3652900 2037000 761170 1275900 0 0 0 0 0 0 0 0 0 39172 1290 41137 207751;207752;207753 211149 211149 1 YKLLGGLAVR ATRGLCAIAQAESLRYKLLGGLAVRRACYG AESLRYKLLGGLAVRRACYGVLRFIMESGA R Y K V R R 1 1 0 0 0 0 0 2 0 0 3 1 0 0 0 0 0 0 1 1 0 0 10 1 1088.6706 P23396;E9PL09;F2Z2S8;H0YCJ7;H0YF32 P23396 107 116 RPS3 40S ribosomal protein S3 yes no 2 0.056002 42.109 By MS/MS By matching 1 1 1.2994 1.2571 10.713 2 Median 1.1637 1.1654 NaN 1 0 Median 1.451 1.356 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8453400 4018700 4434700 8086200 3871600 4214600 367180 147100 220080 0 0 0 0 0 0 0 0 0 0 0 0 39173 2112 41138 207754;207755 211150 211150 1 YKLNVDQK CTVNSVEEKILAAAKYKLNVDQKVIQAGMF KILAAAKYKLNVDQKVIQAGMFDQKSSSHE K Y K Q K V 0 0 1 1 0 1 0 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 8 1 1006.5447 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8Y523;A0A2R8Y5K3;P51531;F6VDE0;A0A0U1RQZ9 P51532 1220 1227 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 0.028207 73.248 By MS/MS By matching By matching By matching 1 1 1 1 1.2301 1.2491 22.35 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0871 1.2561 NaN 1 0 Median 1.9049 1.7762 NaN 1 0 Median 0.99095 1.0414 NaN 1 0 Median 1.3919 1.2421 NaN 1 0 Median 10656000 4767800 5888000 0 0 0 0 0 0 6574600 3174400 3400200 756100 226070 530020 1593200 729870 863350 1731900 637440 1094400 39174 366;2433 41139 207756;207757;207758;207759 211151;211152 211152 2 YKLPVHTEISWK AFDINKLIRDTNSIKYKLPVHTEISWKADG SIKYKLPVHTEISWKADGKIMALGNEDGSI K Y K W K A 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 1 1 1 1 1 0 0 12 1 1499.8136 Q8TEQ6 Q8TEQ6 534 545 GEMIN5 Gem-associated protein 5 yes yes 3 0.0071916 31.708 By MS/MS 1 1.2259 1.2045 NaN 1 Median 1.2259 1.2045 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5542800 2084000 3458800 5542800 2084000 3458800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39175 3478 41140 207760 211153 211153 1 YKPAVNQIECHPYLTQEK NHLQVEMILNKPGLKYKPAVNQIECHPYLT AVNQIECHPYLTQEKLIQYCQSKGIVVTAY K Y K E K L 1 0 1 0 1 2 2 0 1 1 1 2 0 0 2 0 1 0 2 1 0 0 18 1 2217.0888 P15121;E9PCX2 P15121 178 195 AKR1B1 Aldose reductase yes no 3 0.017366 19.819 By MS/MS 1 0.96988 0.87359 NaN 1 Median NaN NaN NaN 0 0 Median 0.96988 0.87359 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5283700 2473000 2810700 0 0 0 5283700 2473000 2810700 0 0 0 0 0 0 0 0 0 0 0 0 39176 2015 41141 207761 211154;211155 211154 2 YKPESEELTAER CPAVRLITLEEEMTKYKPESEELTAERITE MTKYKPESEELTAERITEFCHRFLEGKIKP K Y K E R I 1 1 0 0 0 0 4 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 12 1 1450.694 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 327 338 P4HB Protein disulfide-isomerase yes no 2;3 1.4588E-06 114.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 5 7 2 2 2 2 1.2381 1.1452 21.573 20 Median 0.97871 0.98059 8.013 5 0 Median 1.3409 1.2216 5.2329 7 0 Median 0.91661 1.0229 7.4875 2 0 Median 1.2742 1.1957 1.2566 2 0 Median 1.3066 1.3557 27.656 2 0 Median 2.0581 1.8813 34.324 2 0 Median 224440000 103050000 121400000 106330000 52435000 53897000 96970000 41456000 55513000 8303400 4120300 4183100 4494300 1838900 2655400 5962600 2579800 3382900 2382800 616490 1766300 39177 1883 41142 207762;207763;207764;207765;207766;207767;207768;207769;207770;207771;207772;207773;207774;207775;207776;207777;207778;207779;207780;207781 211156;211157;211158;211159;211160;211161;211162;211163;211164;211165;211166;211167;211168;211169;211170;211171;211172;211173;211174;211175;211176;211177 211159 22 YKPHILLSQENTQIR DQYQEDASDMKDMSKYKPHILLSQENTQIR YKPHILLSQENTQIRDLQQENRELWISLEE K Y K I R D 0 1 1 0 0 2 1 0 1 2 2 1 0 0 1 1 1 0 1 0 0 0 15 1 1839.0003 Q9BRV8 Q9BRV8 67 81 SIKE1 Suppressor of IKBKE 1 yes yes 3 5.0758E-06 70.529 By MS/MS 2 0.88767 0.93125 NaN 1 Median 0.88767 0.93125 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4833600 2525100 2308500 4833600 2525100 2308500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39178 3804 41143 207782;207783 211178;211179 211179 2 YKPLDLRPK QTQKENLRKFYKGKKYKPLDLRPKKTRAMR FYKGKKYKPLDLRPKKTRAMRRRLNKHEEN K Y K P K K 0 1 0 1 0 0 0 0 0 0 2 2 0 0 2 0 0 0 1 0 0 0 9 2 1128.6655 P42766 P42766 78 86 RPL35 60S ribosomal protein L35 yes yes 2 0.015128 63.48 By MS/MS By MS/MS By MS/MS By matching 2 2 1 1 0.76307 0.79893 11.352 5 Median 0.76313 0.80219 NaN 1 0 Median 0.81303 0.78296 17.544 2 0 Median 0.59829 0.67521 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.69351 0.79893 NaN 1 0 Median NaN NaN NaN 0 0 Median 40148000 22060000 18088000 28960000 16224000 12735000 3497600 1761800 1735800 6260700 3278600 2982100 0 0 0 1430100 795590 634490 0 0 0 39179 2316 41144 207784;207785;207786;207787;207788;207789 211180;211181;211182 211180 2 YKPYEEALLQAEAPR SVIQNYNKALQQLEKYKPYEEALLQAEAPR YKPYEEALLQAEAPRLAEYQAYIDFEMKIG K Y K P R L 3 1 0 0 0 1 3 0 0 0 2 1 0 0 2 0 0 0 2 0 0 0 15 1 1776.9046 A0A499FI31;Q15020 A0A499FI31 313 327 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 3 5.4074E-05 76.358 By MS/MS By MS/MS 1 1 0.71611 0.77804 11.759 2 Median 0.81159 0.8455 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.63186 0.71597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18757000 9871400 8885500 10339000 5165200 5173600 0 0 0 8418200 4706200 3712000 0 0 0 0 0 0 0 0 0 39180 473 41145 207790;207791 211183;211184;211185;211186 211184 4 YKQDVYLLPK QALALIELYNAPEGRYKQDVYLLPKKMDEY APEGRYKQDVYLLPKKMDEYVASLHLPTFD R Y K P K K 0 0 0 1 0 1 0 0 0 0 2 2 0 0 1 0 0 0 2 1 0 0 10 1 1265.702 H0Y8B3;O43865;Q96HN2 H0Y8B3 465 474 AHCYL2;AHCYL1 Adenosylhomocysteinase;Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3 yes no 3 0.038352 21.569 By MS/MS 1 0.90317 0.98434 NaN 1 Median 0.90317 0.98434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7420900 5043500 2377400 7420900 5043500 2377400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39181 1160 41146 207792 211187;211188 211187 2 YKRPGYGAYDAFK LESLFQRTAWVFDDKYKRPGYGAYDAFKHA DKYKRPGYGAYDAFKHAVSDPSILDSLDLN K Y K F K H 2 1 0 1 0 0 0 2 0 0 0 2 0 1 1 0 0 0 3 0 0 0 13 2 1534.7569 P05198;G3V4T5;H0YJS4 P05198 142 154 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 3 1.8234E-07 106.58 By matching By matching By MS/MS 1 1 2 1.176 1.2149 14.55 4 Median 1.2394 1.2838 NaN 1 0 Median 1.1019 1.1497 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2973 1.2786 23.413 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59944000 26285000 33659000 20644000 8897500 11747000 6761200 3105900 3655300 0 0 0 32538000 14282000 18256000 0 0 0 0 0 0 39182 1862 41147 207793;207794;207795;207796 211189;211190;211191 211191 3 YKSDSGQQQPSSVGNQSHSASDPGPIR IRTLYLTLKIEQRERYKSDSGQQQPSSVGN VGNQSHSASDPGPIRATAPMWRCSRIMHMQ R Y K I R A 1 1 1 2 0 4 0 3 1 1 0 1 0 0 3 7 0 0 1 1 0 0 27 1 2813.2965 F2Z2U4;H0Y4W2;A0A2R8YFJ4 F2Z2U4 3255 3281 TRRAP yes no 4 0.0053412 22.888 By MS/MS By matching 1 1 0.65454 0.67965 0.8948 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.59088 0.68396 NaN 1 0 Median 0.72506 0.67536 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5614000 3602800 2011200 0 0 0 0 0 0 4783100 3098000 1685100 830890 504810 326080 0 0 0 0 0 0 39183 991 41148 207797;207798 211192;211193 211193 2 YKTQIDHYVGIAR LAELLIFSVPIVYEKYKTQIDHYVGIARDQ EKYKTQIDHYVGIARDQTKSIVEKIQAKLP K Y K A R D 1 1 0 1 0 1 0 1 1 2 0 1 0 0 0 0 1 0 2 1 0 0 13 1 1562.8205 O95197 O95197 997 1009 RTN3 Reticulon-3 yes yes 2;3 3.3256E-07 147.91 By MS/MS By MS/MS By MS/MS By MS/MS 6 4 1 1 1.2901 1.1979 20.047 10 Median 1.1199 1.1368 15.847 5 0 Median 1.4544 1.3346 32.316 3 0 Plateau 1.311 1.3694 NaN 1 1 Median 1.3614 1.2051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 321660000 143820000 177840000 248120000 113710000 134410000 59742000 24998000 34744000 10641000 4050200 6590400 3155400 1059900 2095500 0 0 0 0 0 0 39184 1753 41149 207799;207800;207801;207802;207803;207804;207805;207806;207807;207808;207809;207810 211194;211195;211196;211197;211198;211199;211200;211201;211202;211203;211204;211205;211206;211207;211208;211209 211203 16 YKTQYEELK EKVKTITQVKKIGRRYKTQYEELKAQQDKV KKIGRRYKTQYEELKAQQDKVMETSAQSSG R Y K L K A 0 0 0 0 0 1 2 0 0 0 1 2 0 0 0 0 1 0 2 0 0 0 9 1 1200.6027 P12270 P12270 1441 1449 TPR Nucleoprotein TPR yes yes 3 0.020654 27.115 By MS/MS 1 1.1235 1.2878 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1235 1.2878 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1609800 664340 945470 0 0 0 0 0 0 1609800 664340 945470 0 0 0 0 0 0 0 0 0 39185 1978 41150 207811 211210 211210 1 YKTQYEELKAQQDK EKVKTITQVKKIGRRYKTQYEELKAQQDKV RYKTQYEELKAQQDKVMETSAQSSGDHQEQ R Y K D K V 1 0 0 1 0 3 2 0 0 0 1 3 0 0 0 0 1 0 2 0 0 0 14 2 1770.8788 P12270 P12270 1441 1454 TPR Nucleoprotein TPR yes yes 3 0.0014636 38.028 By matching By MS/MS 2 2 0.89834 1.0614 4.3874 4 Median 0.9699 1.103 2.1622 2 0 Median NaN NaN NaN 0 0 Median 0.85621 1.0269 1.4072 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7499600 4139100 3360600 2275200 1192300 1082900 0 0 0 5224500 2946800 2277700 0 0 0 0 0 0 0 0 0 39186 1978 41151 207812;207813;207814;207815 211211 211211 1 YKVDFIEEK EVEAKVALEIFQHSKYKVDFIEEKASQNPE IFQHSKYKVDFIEEKASQNPERIVKLHRIG K Y K E K A 0 0 0 1 0 0 2 0 0 1 0 2 0 1 0 0 0 0 1 1 0 0 9 1 1169.5968 C9JG87;Q9NYK5 C9JG87 225 233 MRPL39 39S ribosomal protein L39, mitochondrial yes no 2 0.01518 66.692 By matching By MS/MS By matching 1 1 1 1.3674 1.2176 7.2677 3 Median NaN NaN NaN 0 0 Median 1.4146 1.2743 NaN 1 0 Median 1.0566 1.1053 NaN 1 0 Median 1.3674 1.2176 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11525000 4853600 6671100 0 0 0 3971400 1409000 2562400 6573300 3000500 3572900 979920 444130 535790 0 0 0 0 0 0 39187 697 41152 207816;207817;207818 211212;211213 211213 2 YKVEGFPTIYFAPSGDK IAKMDATANDVPSDRYKVEGFPTIYFAPSG VEGFPTIYFAPSGDKKNPVKFEGGDRDLEH R Y K D K K 1 0 0 1 0 0 1 2 0 1 0 2 0 2 2 1 1 0 2 1 0 0 17 1 1917.9513 P13667;A0A499FI48 P13667 595 611 PDIA4 Protein disulfide-isomerase A4 yes no 2;3 0.00010089 64.65 By MS/MS By matching By MS/MS By matching 2 1 1 1 0.86685 0.83802 26.95 5 Median 0.73151 0.7534 4.0328 2 0 Median 0.86685 0.83802 NaN 1 0 Median 0.89036 1.0078 NaN 1 0 Median 1.4601 1.4264 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17324000 9479100 7845100 12593000 7242900 5349600 1272500 666950 605530 3200900 1475800 1725000 258340 93417 164920 0 0 0 0 0 0 39188 1993 41153 207819;207820;207821;207822;207823 211214;211215;211216;211217;211218 211216 5 YKVEGFPTIYFAPSGDKK IAKMDATANDVPSDRYKVEGFPTIYFAPSG EGFPTIYFAPSGDKKNPVKFEGGDRDLEHL R Y K K K N 1 0 0 1 0 0 1 2 0 1 0 3 0 2 2 1 1 0 2 1 0 0 18 2 2046.0462 P13667;A0A499FI48 P13667 595 612 PDIA4 Protein disulfide-isomerase A4 yes no 3 4.8699E-05 46.159 By MS/MS 1 0.7853 0.76729 NaN 1 Median 0.7853 0.76729 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9051100 4969300 4081800 9051100 4969300 4081800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39189 1993 41154 207824 211219;211220 211219 2 YKYEVEDFTGVYEEVDEEQYSK QEALERLKKAKAGEKYKYEVEDFTGVYEEV FTGVYEEVDEEQYSKLVQARQDDDWIVDDD K Y K S K L 0 0 0 2 0 1 6 1 0 0 0 2 0 1 0 1 1 0 4 3 0 0 22 1 2748.1967 A0A087WU64;A6NMQ1;P09884 A0A087WU64 47 68 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 3 0.035489 12.677 By MS/MS 1 0.92806 0.93801 NaN 1 Median 0.92806 0.93801 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2492700 1332600 1160100 2492700 1332600 1160100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39190 26 41155 207825 211221 211221 1 YLAADKDGNVTCER EAGSAAVCLRSHLGRYLAADKDGNVTCERE RYLAADKDGNVTCEREVPGPDCRFLIVAHD R Y L E R E 2 1 1 2 1 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 14 1 1610.7359 Q16658 Q16658 69 82 FSCN1 Fascin yes yes 2;3 8.0964E-05 76.143 By MS/MS By MS/MS 1 2 1.174 1.0715 8.3384 3 Median 0.93741 0.94089 NaN 1 0 Median 1.1886 1.0852 1.8069 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11557000 5356900 6200000 2847000 1497000 1350000 8709900 3859900 4850000 0 0 0 0 0 0 0 0 0 0 0 0 39191 2993 41156 207826;207827;207828 211222;211223;211224;211225;211226 211223 5 YLAAVNTGAIK QTSGQTAKDPSVSIRYLAAVNTGAIKADDM VSIRYLAAVNTGAIKADDMPPVQGTVAEHS R Y L I K A 3 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 0 1119.6288 Q8NFC6 Q8NFC6 2525 2535 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 yes yes 2 0.00014431 88.181 By MS/MS By MS/MS 1 1 1.0661 1.0811 0.99358 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.021 1.0888 NaN 1 0 Median 1.1133 1.0736 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28354000 13551000 14803000 0 0 0 0 0 0 26011000 12350000 13661000 2343800 1201600 1142200 0 0 0 0 0 0 39192 3434 41157 207829;207830 211227;211228;211229 211228 3 YLAEAQGTYEELQR EMGVSYLPVNQNWERYLAEAQGTYEELQRE RYLAEAQGTYEELQREMKKSLMDLANDACQ R Y L Q R E 2 1 0 0 0 2 3 1 0 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1669.7948 P54098;H0YD36;A0A1B0GTQ6;A0A1B0GTU7;A0A1B0GW33 P54098 444 457 POLG DNA polymerase subunit gamma-1 yes no 2 4.661E-20 129.89 By matching By MS/MS By MS/MS 1 2 1 1.0985 1.0647 16.056 3 Median 1.0985 1.0647 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94689 1.0414 NaN 1 1 Median 1.632 1.3897 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13147000 6109800 7037300 3605300 1676800 1928600 0 0 0 7389300 3611200 3778000 2152500 821840 1330700 0 0 0 0 0 0 39193 2479 41158 207831;207832;207833;207834 211230;211231;211232;211233 211231 4 YLAEFATGNDR ESKVFYYKMKGDYHRYLAEFATGNDRKEAA DYHRYLAEFATGNDRKEAAENSLVAYKAAS R Y L D R K 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 11 0 1255.5833 P62258;K7EM20 P62258 131 141 YWHAE 14-3-3 protein epsilon yes no 2 0.00011205 143.03 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 4 2 2 1 1 1.0268 1.3272 20.04 12 Linear 1.0179 0.95689 16.813 2 1 Median 1.0449 0.90415 14.734 4 0 Median 1.2572 1.2136 25.531 2 0 Median 0.97385 0.81195 14.634 2 0 Median 0.99878 0.99979 NaN 1 0 Median 0.89084 0.71692 NaN 1 1 Median 465450000 214000000 251450000 210790000 96851000 113940000 99682000 44835000 54847000 101880000 45844000 56035000 40830000 20823000 20006000 6603600 2998300 3605200 5669800 2651300 3018500 39194 2576 41159 207835;207836;207837;207838;207839;207840;207841;207842;207843;207844;207845;207846 211234;211235;211236;211237;211238;211239;211240;211241;211242;211243;211244;211245;211246;211247;211248;211249;211250;211251 211245 18 YLAEFATGNDRK ESKVFYYKMKGDYHRYLAEFATGNDRKEAA YHRYLAEFATGNDRKEAAENSLVAYKAASD R Y L R K E 2 1 1 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 12 1 1383.6783 P62258;K7EM20 P62258 131 142 YWHAE 14-3-3 protein epsilon yes no 2;3 6.5958E-15 190.02 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 7 4 4 2 4 1.0971 1.1027 15.333 26 Median 1.0868 1.1237 17.167 6 0 Plateau 1.156 1.0376 25.549 6 0 Median 1.0388 1.1121 1.6459 4 0 Median 1.187 1.1527 5.9306 4 0 Linear 1.1334 1.2016 4.7595 2 1 Median 1.1668 1.0459 7.8384 4 0 Median 1157100000 541890000 615180000 551490000 260860000 290630000 282260000 128670000 153590000 180310000 87614000 92699000 104030000 46402000 57630000 30243000 14348000 15895000 8731600 3995000 4736500 39195 2576 41160 207847;207848;207849;207850;207851;207852;207853;207854;207855;207856;207857;207858;207859;207860;207861;207862;207863;207864;207865;207866;207867;207868;207869;207870;207871;207872;207873 211252;211253;211254;211255;211256;211257;211258;211259;211260;211261;211262;211263;211264;211265;211266;211267;211268;211269;211270;211271;211272;211273;211274;211275;211276;211277;211278;211279;211280;211281;211282;211283;211284;211285;211286;211287;211288;211289;211290;211291;211292;211293;211294 211255 43 YLAEKYEWDVAEAR KGEVSARQELKQRARYLAEKYEWDVAEARK RYLAEKYEWDVAEARKIWCFGPDGTGPNIL R Y L A R K 3 1 0 1 0 0 3 0 0 0 1 1 0 0 0 0 0 1 2 1 0 0 14 1 1741.8312 P13639 P13639 634 647 EEF2 Elongation factor 2 yes yes 2;3 8.2427E-05 92.866 By MS/MS By matching By MS/MS By matching By MS/MS By matching 5 1 2 1 1 2 1.0924 1.074 21.318 12 Median 0.91864 0.92252 23.314 5 1 Median 1.0378 1.0327 NaN 1 0 Median 1.0809 1.2261 15.091 2 1 Median 0.79211 0.77224 NaN 1 0 Median 1.2595 1.3887 NaN 1 1 Median 1.1871 1.074 2.3854 2 0 Median 150170000 67217000 82952000 119160000 53618000 65546000 5808100 2952600 2855600 20992000 8875700 12116000 165290 85585 79701 3628700 1506200 2122600 411450 179090 232360 39196 1992 41161 207874;207875;207876;207877;207878;207879;207880;207881;207882;207883;207884;207885 211295;211296;211297;211298;211299;211300;211301;211302 211296 8 YLAEVAAGDDK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV DYYRYLAEVAAGDDKKGIVDQSQQAYQEAF R Y L D K K 3 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1150.5506 P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80 P63104 128 138 YWHAZ 14-3-3 protein zeta/delta yes no 2 0.00013559 116.52 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 1.0999 0.94248 15.443 7 Median 1.1575 1.0804 26.462 2 1 Median 1.1522 0.96173 7.3146 2 0 Median 1.0051 0.94248 NaN 1 0 Median 1.0547 0.87428 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4269 1.1948 NaN 1 1 Median 141830000 67116000 74709000 66757000 31121000 35636000 42277000 20090000 22187000 24934000 12302000 12632000 5292300 2528000 2764300 0 0 0 2565500 1075500 1490000 39197 2618 41162 207886;207887;207888;207889;207890;207891;207892 211303;211304;211305;211306;211307;211308;211309;211310;211311;211312;211313;211314 211309 12 YLAEVAAGDDKK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE R Y L K K G 3 0 0 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1278.6456 P63104;E7EX29;B0AZS6;B7Z2E6;H0YB80 P63104 128 139 YWHAZ 14-3-3 protein zeta/delta yes no 2;3 1.9949E-06 150.61 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 9 3 4 3 4 1.0964 1.0589 11.896 29 Median 1.0436 1.0347 5.646 6 0 Median 1.0584 0.95298 14.732 9 3 Median 1.0864 1.0755 1.2379 3 0 Plateau 1.2474 1.11 4.8338 4 0 Median 1.1754 1.2512 15.361 3 0 Plateau 1.2825 1.1121 4.4743 4 0 Median 1013100000 475660000 537400000 465530000 221090000 244440000 309270000 142560000 166710000 184950000 88278000 96668000 37180000 16889000 20292000 8147300 3482300 4665000 7990600 3355800 4634800 39198 2618 41163 207893;207894;207895;207896;207897;207898;207899;207900;207901;207902;207903;207904;207905;207906;207907;207908;207909;207910;207911;207912;207913;207914;207915;207916;207917;207918;207919;207920;207921 211315;211316;211317;211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328;211329;211330;211331;211332;211333;211334;211335;211336;211337;211338;211339;211340;211341;211342;211343;211344;211345;211346;211347;211348;211349;211350;211351;211352;211353;211354;211355;211356;211357;211358;211359;211360;211361;211362;211363;211364;211365;211366;211367;211368;211369;211370;211371;211372 211319 58 YLAEVACGDDR ESKVFYLKMKGDYFRYLAEVACGDDRKQTI DYFRYLAEVACGDDRKQTIDNSQGAYQEAF R Y L D R K 2 1 0 2 1 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 11 0 1267.5503 P27348;E9PG15 P27348 128 138 YWHAQ 14-3-3 protein theta yes no 2 0.00012996 116.3 By MS/MS 2 1.2795 1.0821 0.37415 2 Median NaN NaN NaN 0 0 Median 1.2795 1.0821 0.37415 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21439000 9360100 12079000 0 0 0 21439000 9360100 12079000 0 0 0 0 0 0 0 0 0 0 0 0 39199 2152 41164 207922;207923 211373;211374 211374 2 YLAEVACGDDRK ESKVFYLKMKGDYFRYLAEVACGDDRKQTI YFRYLAEVACGDDRKQTIDNSQGAYQEAFD R Y L R K Q 2 1 0 2 1 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 1 1395.6453 P27348;E9PG15 P27348 128 139 YWHAQ 14-3-3 protein theta yes no 2;3 9.8178E-05 86.624 By MS/MS 2 1.1433 1.0636 14.51 2 Median NaN NaN NaN 0 0 Median 1.1433 1.0636 14.51 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8836600 3720400 5116100 0 0 0 8836600 3720400 5116100 0 0 0 0 0 0 0 0 0 0 0 0 39200 2152 41165 207924;207925 211375;211376;211377 211377 3 YLAEVASGEK ESKVFYLKMKGDYYRYLAEVASGEKKNSVV GDYYRYLAEVASGEKKNSVVEASEAAYKEA R Y L E K K 2 0 0 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 10 0 1065.5342 Q04917;A2IDB2 Q04917 133 142 YWHAH 14-3-3 protein eta yes no 2 0.00033682 116.37 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 1.1612 1.0247 7.8215 6 Median 1.0559 0.97782 NaN 1 0 Median 1.1773 0.98903 NaN 1 0 Median 1.2466 1.1685 NaN 1 0 Median 1.1453 0.94843 NaN 1 0 Median 1.0663 1.0859 NaN 1 0 Median 1.2666 1.0616 NaN 1 1 Median 47621000 21623000 25997000 24564000 11323000 13241000 5503300 2381600 3121700 10526000 4876300 5649300 2451800 998720 1453100 2104100 835720 1268300 2472200 1207800 1264400 39201 2714 41166 207926;207927;207928;207929;207930;207931 211378;211379;211380;211381;211382;211383;211384;211385;211386 211380 9 YLAEVASGEKK ESKVFYLKMKGDYYRYLAEVASGEKKNSVV DYYRYLAEVASGEKKNSVVEASEAAYKEAF R Y L K K N 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 11 1 1193.6292 Q04917;A2IDB2 Q04917 133 143 YWHAH 14-3-3 protein eta yes no 2;3 0.00023145 91.867 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.1183 1.0727 12.087 5 Median 1.0551 1.0727 NaN 1 0 Median 1.1183 1.0231 NaN 1 0 Median 1.0469 1.0453 NaN 1 0 Median 1.3226 1.1892 NaN 1 0 Median 1.3125 1.3704 NaN 1 0 Median NaN NaN NaN 0 0 Median 26069000 9308100 16761000 14673000 5295600 9377900 4549600 1307900 3241600 5531600 2152000 3379600 654460 294960 359500 660360 257700 402660 0 0 0 39202 2714 41167 207932;207933;207934;207935;207936;207937;207938;207939 211387;211388;211389;211390;211391;211392;211393;211394;211395;211396;211397 211394 11 YLAEVATGDDK ESRVFYLKMKGDYYRYLAEVATGDDKKRII DYYRYLAEVATGDDKKRIIDSARSAYQEAM R Y L D K K 2 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 11 0 1180.5612 P31947 P31947 130 140 SFN 14-3-3 protein sigma yes yes 2 0.0010034 83.869 By MS/MS 1 0.53891 0.45251 NaN 1 Median NaN NaN NaN 0 0 Median 0.53891 0.45251 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5990400 3586600 2403800 0 0 0 5990400 3586600 2403800 0 0 0 0 0 0 0 0 0 0 0 0 39203 2211 41168 207940 211398 211398 1 YLAEVATGDDKKR ESRVFYLKMKGDYYRYLAEVATGDDKKRII YRYLAEVATGDDKKRIIDSARSAYQEAMDI R Y L K R I 2 1 0 2 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 1 0 0 13 2 1464.7573 P31947 P31947 130 142 SFN 14-3-3 protein sigma yes yes 3 2.7702E-05 85.554 By MS/MS By MS/MS 1 1 1.0807 1.0384 3.5386 2 Median 0.95108 1.0127 NaN 1 0 Median 1.2279 1.0647 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8621200 3679400 4941800 5518300 2421800 3096500 3103000 1257600 1845400 0 0 0 0 0 0 0 0 0 0 0 0 39204 2211 41169 207941;207942 211399;211400;211401;211402 211401 4 YLAEVATGEK ESKVFYLKMKGDYYRYLAEVATGEKRATVV GDYYRYLAEVATGEKRATVVESSEKAYSEA R Y L E K R 2 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1079.5499 P61981 P61981 133 142 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 0.00041856 116.05 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0064 0.98548 9.6492 5 Linear 0.9906 0.91546 9.5997 2 0 Median 1.0376 0.86391 NaN 1 0 Median 1.0064 0.94395 NaN 1 0 Median 0.92192 0.76487 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 135920000 64475000 71441000 63475000 29873000 33602000 24443000 11875000 12567000 37448000 18149000 19300000 10550000 4577600 5972500 0 0 0 0 0 0 39205 2566 41170 207943;207944;207945;207946;207947 211403;211404;211405;211406;211407;211408;211409 211406 7 YLAEVATGEKR ESKVFYLKMKGDYYRYLAEVATGEKRATVV DYYRYLAEVATGEKRATVVESSEKAYSEAH R Y L K R A 2 1 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1235.651 P61981 P61981 133 143 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2;3 1.0685E-09 175.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 2 2 3 2 1.0811 1.0225 15.483 11 Median 1.0746 1.1207 16.251 4 0 Median 1.0917 1.0103 0.7498 2 0 Median 1.1314 1.1802 9.3283 2 0 Median 1.0577 0.93631 14.702 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 92844000 42923000 49921000 50485000 22946000 27539000 16738000 7659700 9078500 18715000 9129500 9585200 6905800 3188100 3717700 0 0 0 0 0 0 39206 2566 41171 207948;207949;207950;207951;207952;207953;207954;207955;207956;207957;207958;207959;207960 211410;211411;211412;211413;211414;211415;211416;211417;211418;211419;211420;211421;211422;211423;211424;211425;211426;211427;211428 211416 19 YLAFTEEK YELGGEPERKMWVDRYLAFTEEKAMGMTNL RKMWVDRYLAFTEEKAMGMTNLPAVGRKPL R Y L E K A 1 0 0 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 999.49131 O14497;H0Y488;A0A1B0GTU5;A0A087WUV6 O14497 1027 1034 ARID1A AT-rich interactive domain-containing protein 1A yes no 2 0.0023142 112.17 By MS/MS By MS/MS By MS/MS 1 1 1 1.1427 1.2597 25.265 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1427 1.2597 NaN 1 0 Median 1.3898 1.2609 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94927 0.81362 NaN 1 0 Median 19127000 9190400 9937000 0 0 0 0 0 0 16280000 8019700 8260800 1650800 662540 988220 0 0 0 1196200 508220 687990 39207 1480 41172 207961;207962;207963 211429;211430;211431;211432 211430 4 YLAIAPPIIK IIIGQESITYHNGDKYLAIAPPIIKQSTIV HNGDKYLAIAPPIIKQSTIVCHNRVDPNGS K Y L I K Q 2 0 0 0 0 0 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 0 10 0 1097.6849 Q16531;F5GY55 Q16531 245 254 DDB1 DNA damage-binding protein 1 yes no 2 0.0016668 63.48 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 5 2 1 1 0.78751 0.76163 23.574 14 Median 0.80081 0.8062 3.3713 3 0 Plateau 0.97193 0.8517 1.2626 2 0 Median 0.60522 0.64927 8.7794 5 0 Median 1.336 1.1514 3.2677 2 0 Median 0.71043 0.74188 NaN 1 0 Median 1.3945 1.1928 NaN 1 0 Median 56466000 31522000 24944000 16047000 8451100 7595400 7789700 3861300 3928400 29844000 17938000 11906000 1734300 740080 994230 973470 498390 475080 78208 33027 45181 39208 2985 41173 207964;207965;207966;207967;207968;207969;207970;207971;207972;207973;207974;207975;207976;207977 211433;211434;211435;211436;211437;211438;211439;211440;211441;211442;211443;211444;211445;211446;211447;211448;211449;211450 211433 18 YLAIHGMETLKGETK LAHYQSKKHANKVKRYLAIHGMETLKGETK YLAIHGMETLKGETKKLDSDQKSSRSKDKN R Y L T K K 1 0 0 0 0 0 2 2 1 1 2 2 1 0 0 0 2 0 1 0 0 0 15 1 1689.876 D6RJ07;Q9UL40;B7Z6B6;B7Z6Q2 D6RJ07 104 118 ZNF346 Zinc finger protein 346 yes no 3 0.00020631 47.532 By MS/MS 2 0.93384 0.98472 1.6731 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93384 0.98472 1.6731 2 0 Median NaN NaN NaN 0 0 Median 7529500 4276600 3252900 0 0 0 0 0 0 0 0 0 0 0 0 7529500 4276600 3252900 0 0 0 39209 829 41174 207978;207979 211451;211452 211451 2 YLALDEADR MDLLQKKMVSLDICRYLALDEADRMIDMGF SLDICRYLALDEADRMIDMGFEGDIRTIFS R Y L D R M 2 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1064.5138 Q9UJV9 Q9UJV9 340 348 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.0014585 81.296 By matching By matching By MS/MS By matching 1 1 1 1 1.279 1.213 51.695 4 Median 0.76358 0.75314 NaN 1 0 Median 1.6916 1.4645 NaN 1 0 Median 0.96708 1.0046 NaN 1 0 Median 3.0313 2.4919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11752000 5244400 6507200 3557600 1901900 1655700 2168700 634000 1534700 5891500 2652500 3239000 133750 56021 77729 0 0 0 0 0 0 39210 4299 41175 207980;207981;207982;207983 211453 211453 1 YLALHTDLLEEEARQEEEYKR SEEEARIEALCDEERYLALHTDLLEEEARQ DLLEEEARQEEEYKRLSEALAEDGSYNAVG R Y L K R L 2 2 0 1 0 1 6 0 1 0 4 1 0 0 0 0 1 0 2 0 0 0 21 2 2634.2926 Q12872 Q12872 115 135 SFSWAP Splicing factor, suppressor of white-apricot homolog yes yes 4 1.2825E-28 107.89 By MS/MS 1 0.87566 0.98716 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87566 0.98716 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12348000 5304000 7044400 0 0 0 0 0 0 12348000 5304000 7044400 0 0 0 0 0 0 0 0 0 39211 2765 41176 207984 211454 211454 1 YLANIEQQHGNSGR NPLCDLTPIFKDYEKYLANIEQQHGNSGRN KYLANIEQQHGNSGRNSESESNKVAAETQS K Y L G R N 1 1 2 0 0 2 1 2 1 1 1 0 0 0 0 1 0 0 1 0 0 0 14 0 1585.7597 Q9UKX7 Q9UKX7 193 206 NUP50 Nuclear pore complex protein Nup50 yes yes 2;3 0.00023811 57.136 By MS/MS By MS/MS By matching 1 2 1 1.1018 0.95314 22.118 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2422 1.2606 NaN 1 0 Median 1.1018 0.95314 7.2203 2 0 Median 0.69057 0.74073 NaN 1 0 Median NaN NaN NaN 0 0 Median 13989000 7299600 6689100 0 0 0 0 0 0 7765500 3858400 3907100 2583500 1346400 1237100 3639700 2094800 1544900 0 0 0 39212 4317 41177 207985;207986;207987;207988 211455;211456;211457;211458 211456 4 YLAPSGPSGTLK EFRSGKVAFRDCEGRYLAPSGPSGTLKAGK EGRYLAPSGPSGTLKAGKATKVGKDELFAL R Y L L K A 1 0 0 0 0 0 0 2 0 0 2 1 0 0 2 2 1 0 1 0 0 0 12 0 1189.6343 Q16658 Q16658 230 241 FSCN1 Fascin yes yes 2 3.2601E-06 109.29 By MS/MS By MS/MS By MS/MS 5 2 2 0.8193 0.72324 54.32 9 Median 0.79146 0.72324 66.375 5 0 Median 0.86538 0.73825 6.1533 2 0 Median 0.85337 0.90359 36.875 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 225250000 122210000 103040000 141910000 78171000 63735000 64383000 33633000 30749000 18957000 10402000 8554800 0 0 0 0 0 0 0 0 0 39213 2993 41178 207989;207990;207991;207992;207993;207994;207995;207996;207997 211459;211460;211461;211462;211463;211464;211465;211466;211467;211468;211469;211470;211471 211463 12 YLAQWYSETNGR KKDHSHTPWIVIIAKYLAQWYSETNGRIPK IAKYLAQWYSETNGRIPKTYKEKEDFRDLI K Y L G R I 1 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 1 1 2 0 0 0 12 0 1486.6841 Q13564 Q13564 221 232 NAE1 NEDD8-activating enzyme E1 regulatory subunit yes yes 2 0.00039479 79.974 By MS/MS 1 1.0424 1.0196 NaN 1 Median 1.0424 1.0196 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4309100 2005300 2303800 4309100 2005300 2303800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39214 2825 41179 207998 211472;211473 211472 2 YLAQYYFK CGEIVEHLEESTAFRYLAQYYFKCKLWDEA EESTAFRYLAQYYFKCKLWDEASTCAQKCC R Y L F K C 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 3 0 0 0 8 0 1094.5437 Q9UJX2 Q9UJX2 515 522 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.007444 67.035 By MS/MS By MS/MS 1 1 1.106 1.0161 4.415 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0596 1.0483 NaN 1 0 Median 1.1544 0.98488 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9139400 4202600 4936800 0 0 0 0 0 0 7154200 3200600 3953600 1985200 1002000 983210 0 0 0 0 0 0 39215 4300 41180 207999;208000 211474;211475;211476 211475 3 YLASGSGDTTVR HSEAVISVAFSPTGKYLASGSGDTTVRFWD TGKYLASGSGDTTVRFWDLSTETPHFTCKG K Y L V R F 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 2 2 0 1 1 0 0 12 0 1225.5939 Q9NVX2 Q9NVX2 128 139 NLE1 Notchless protein homolog 1 yes yes 2 0.00059168 79.148 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 1 2 1.3155 1.207 35.488 6 Median 1.277 1.2649 NaN 1 0 Median 3.259 2.8133 NaN 1 1 Median 1.1619 1.1704 NaN 1 0 Median 1.3103 1.1366 4.21 2 1 Median NaN NaN NaN 0 0 Median 1.4442 1.2442 NaN 1 1 Median 11287000 4392300 6894800 1350700 528210 822520 2046700 638900 1407800 2887800 1200600 1687200 2684200 1132100 1552100 0 0 0 2317800 892600 1425200 39216 4142 41181 208001;208002;208003;208004;208005;208006;208007;208008 211477;211478;211479;211480;211481;211482;211483;211484;211485;211486;211487 211480 11 YLAVESPFLK SGIDRHLFCLYVVSKYLAVESPFLKEVLSE YVVSKYLAVESPFLKEVLSEPWRLSTSQTP K Y L L K E 1 0 0 0 0 0 1 0 0 0 2 1 0 1 1 1 0 0 1 1 0 0 10 0 1165.6383 P50416 P50416 666 675 CPT1A Carnitine O-palmitoyltransferase 1, liver isoform yes yes 2 0.01267 41.029 By MS/MS 1 1.0501 1.042 NaN 1 Median 1.0501 1.042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2950900 1492200 1458700 2950900 1492200 1458700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39217 2413 41182 208009 211488;211489 211488 2 YLDEADRDKER LGNEWSKLPPEEKQRYLDEADRDKERYMKE EKQRYLDEADRDKERYMKELEQYQKTEAYK R Y L E R Y 1 2 0 3 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 11 2 1408.6583 Q9NP66;H0YKM5 Q9NP66 152 162 HMG20A High mobility group protein 20A yes no 2;3 0.00013891 69.979 By matching By matching By MS/MS By MS/MS 1 2 3 2 0.89417 0.99854 19.881 8 Median 0.94805 1.0551 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.65918 0.76932 28.659 2 0 Median NaN NaN NaN 0 0 Median 0.84335 0.96497 9.732 3 0 Median 1.2941 1.1227 11.74 2 0 Median 10899000 5467900 5430700 246110 123220 122890 0 0 0 815900 484240 331660 0 0 0 8277900 4164500 4113400 1558700 695950 862730 39218 4040 41183 208010;208011;208012;208013;208014;208015;208016;208017 211490;211491;211492;211493;211494;211495 211491 6 YLDEDTIYHLQPSGR DALKEKVIKAVVPAKYLDEDTIYHLQPSGR YLDEDTIYHLQPSGRFVIGGPQGDAGLTGR K Y L G R F 0 1 0 2 0 1 1 1 1 1 2 0 0 0 1 1 1 0 2 0 0 0 15 0 1805.8584 P31153 P31153 235 249 MAT2A S-adenosylmethionine synthase isoform type-2 yes yes 2;3 9.8069E-08 128.85 By MS/MS By MS/MS By MS/MS 2 2 2 0.9464 0.84784 23.206 6 Median 0.89219 0.89023 8.1939 2 0 Median 0.97287 0.84014 2.583 2 0 Median 0.7899 0.82361 50.532 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 61385000 32279000 29106000 29307000 16443000 12864000 24015000 12091000 11924000 8063200 3744700 4318400 0 0 0 0 0 0 0 0 0 39219 2202 41184 208018;208019;208020;208021;208022;208023 211496;211497;211498;211499;211500;211501 211498 6 YLDEIVKEVEAK DQLLLEKLENKRINKYLDEIVKEVEAKAPI INKYLDEIVKEVEAKAPILKRQREEYERAQ K Y L A K A 1 0 0 1 0 0 3 0 0 1 1 2 0 0 0 0 0 0 1 2 0 0 12 1 1434.7606 P12270 P12270 422 433 TPR Nucleoprotein TPR yes yes 2;3 1.6256E-05 108.47 By matching By matching By MS/MS By matching By matching 2 1 4 1 1 0.97322 1.0501 15.368 9 Median 1.1231 1.1879 16.803 2 0 Median 1.4115 1.3386 NaN 1 0 Median 0.86413 0.99117 7.4295 4 0 Median 1.1316 1.0501 NaN 1 0 Median 1.2103 1.2625 NaN 1 0 Median NaN NaN NaN 0 0 Median 25041000 13186000 11856000 4517700 2133100 2384700 389520 179950 209580 19319000 10598000 8720800 134890 63148 71737 680080 211200 468880 0 0 0 39220 1978 41185 208024;208025;208026;208027;208028;208029;208030;208031;208032 211502;211503;211504;211505;211506 211505 5 YLDELMK SVTGLTNIEEENCQRYLDELMKLKAQAHAE IEEENCQRYLDELMKLKAQAHAENNEFITW R Y L M K L 0 0 0 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 7 0 910.447 P46940;A0A0J9YXZ5 P46940 497 503 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 0.031276 49.358 By matching By MS/MS By matching By matching By matching 2 2 1 1 1 1.1459 1.0604 19.277 6 Median 0.86517 0.84433 31.634 2 0 Median 1.2498 1.1096 5.8115 2 0 Median 0.90015 0.99894 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2245 1.0671 NaN 1 0 Median 26628000 11951000 14678000 14484000 6314900 8169400 10247000 4647300 5599700 1570600 792540 778020 207780 145740 62038 0 0 0 118640 50168 68476 39221 2350 41186 208033;208034;208035;208036;208037;208038;208039 211507;211508 211507 2 YLDFSSIITEVR QASDTSVVLSMDNNRYLDFSSIITEVRARY NNRYLDFSSIITEVRARYEEIARSSKAEAE R Y L V R A 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 2 1 0 1 1 0 0 12 0 1441.7453 CON__Q7RTT2;CON__Q8N1N4-2;Q8N1N4 CON__Q7RTT2 275 286 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.0049932 61.65 By MS/MS 1 0.12469 0.12437 NaN 1 Median 0.12469 0.12437 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 924920 843990 80927 924920 843990 80927 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 39222 788 41187 208040 211509 211509 1 YLDGLTAER NLEPIFQGYIDSLKRYLDGLTAERTSQNSE IDSLKRYLDGLTAERTSQNSELNNMQDLVE R Y L E R T 1 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1036.5189 CON__P35908;CON__P35908v2;P35908 CON__P35908 245 253 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.6025E-26 176.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 10 11 8 14 7 4 0.019619 0.017642 105.74 54 Median 0.025339 0.023817 78.795 10 10 Median 0.020534 0.017534 93.786 11 11 Median 0.032712 0.033476 89.694 8 8 Median 0.013513 0.011436 110.88 14 14 Median 0.014357 0.014469 55.007 7 7 Median 0.018954 0.015456 223.27 4 4 Median 2118000000 2078600000 39407000 456800000 445650000 11149000 359430000 350640000 8789500 276730000 270480000 6258000 437350000 431500000 5850100 337750000 332350000 5399000 249900000 247940000 1961700 + 39223 764;765 41188 208041;208042;208043;208044;208045;208046;208047;208048;208049;208050;208051;208052;208053;208054;208055;208056;208057;208058;208059;208060;208061;208062;208063;208064;208065;208066;208067;208068;208069;208070;208071;208072;208073;208074;208075;208076;208077;208078;208079;208080;208081;208082;208083;208084;208085;208086;208087;208088;208089;208090;208091;208092;208093;208094 211510;211511;211512;211513;211514;211515;211516;211517;211518;211519;211520;211521;211522;211523;211524;211525;211526;211527;211528;211529;211530;211531;211532;211533;211534;211535;211536;211537;211538;211539;211540;211541;211542;211543;211544;211545;211546;211547;211548;211549;211550;211551;211552;211553;211554;211555;211556;211557;211558;211559;211560;211561;211562;211563;211564;211565;211566;211567;211568;211569;211570 211512 61 YLDLHDCYLK AQNLVEFTDEEGYGRYLDLHDCYLKYINLK EGYGRYLDLHDCYLKYINLKASEKLDYITY R Y L L K Y 0 0 0 2 1 0 0 0 1 0 3 1 0 0 0 0 0 0 2 0 0 0 10 0 1338.6278 Q12874 Q12874 139 148 SF3A3 Splicing factor 3A subunit 3 yes yes 3 0.0089472 33.225 By matching By MS/MS 2 1 1.1964 1.139 4.6014 3 Plateau NaN NaN NaN 0 0 Median 1.1814 1.0629 3.2258 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1964 1.139 NaN 1 0 Median NaN NaN NaN 0 0 Median 5859300 2592200 3267100 0 0 0 755530 309340 446180 0 0 0 0 0 0 5103700 2282900 2820900 0 0 0 39224 2767 41189 208095;208096;208097 211571;211572 211572 2 YLDLILNDFVR LHFGLKDKETRYRQRYLDLILNDFVRQKFI YRQRYLDLILNDFVRQKFIIRSKIITYIRS R Y L V R Q 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 0 0 1 1 0 0 11 0 1379.7449 Q15046;J3KRL2;H3BPV7 Q15046 231 241 KARS Lysine--tRNA ligase yes no 2 0.00042523 69.954 By MS/MS By MS/MS By matching 1 3 1 1.222 1.1019 8.8474 5 Median 1.1232 1.1019 NaN 1 0 Median 1.2478 1.114 5.1641 3 0 Median NaN NaN NaN 0 0 Median 1.0751 0.93813 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14132000 6422400 7709500 4024100 1944000 2080200 10026000 4441700 5584400 0 0 0 81672 36742 44930 0 0 0 0 0 0 39225 2919 41190 208098;208099;208100;208101;208102 211573;211574;211575 211575 3 YLDPEYIDR ERVKILYKKIEDLIKYLDPEYIDRIAIPDA IEDLIKYLDPEYIDRIAIPDASKLQFILAE K Y L D R I 0 1 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 0 9 0 1182.5557 O75935;X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1 O75935 67 75 DCTN3 Dynactin subunit 3 yes no 2 0.00021561 141.39 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 0.88358 0.83606 12.823 6 Median 0.88358 0.84966 7.1151 2 0 Median 0.90727 0.76064 24.437 2 0 Median 0.82193 0.78979 NaN 1 0 Median 1.0484 0.86512 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49487000 25197000 24290000 27183000 13917000 13266000 11894000 6021500 5872500 9539600 4875700 4663900 870420 382490 487930 0 0 0 0 0 0 39226 1708 41191 208103;208104;208105;208106;208107;208108 211576;211577;211578;211579;211580;211581;211582;211583 211576 8 YLDPSFFQHR KWKKSDVKFEDRFDKYLDPSFFQHRIHWFS DRFDKYLDPSFFQHRIHWFSIFNSFMMVIF K Y L H R I 0 1 0 1 0 1 0 0 1 0 1 0 0 2 1 1 0 0 1 0 0 0 10 0 1308.6251 Q9HD45;Q5TB53 Q9HD45 211 220 TM9SF3 Transmembrane 9 superfamily member 3 yes no 2;3 0.00019253 107.15 By MS/MS By MS/MS By matching 2 5 1 1.1745 1.0521 14.73 8 Median 0.99615 0.96912 3.8841 2 0 Median 1.2745 1.1112 15.561 5 2 Median 1.1532 1.2861 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42077000 19286000 22791000 15338000 7835200 7503200 24779000 10495000 14284000 1959000 955710 1003300 0 0 0 0 0 0 0 0 0 39227 4037 41192 208109;208110;208111;208112;208113;208114;208115;208116 211584;211585;211586;211587;211588 211584 5 YLDQMEDLYEDFHIVK KPCKMCEARHKIQAKYLDQMEDLYEDFHIV LDQMEDLYEDFHIVKLPLLPHEVRGADKVN K Y L V K L 0 0 0 3 0 1 2 0 1 1 2 1 1 1 0 0 0 0 2 1 0 0 16 0 2056.9452 O43681;A0A087WXS7 O43681 302 317 ASNA1 ATPase ASNA1 yes no 3 3.943E-05 50.608 By MS/MS 1 1.1314 0.96958 NaN 1 Median NaN NaN NaN 0 0 Median 1.1314 0.96958 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4410500 2113900 2296600 0 0 0 4410500 2113900 2296600 0 0 0 0 0 0 0 0 0 0 0 0 39228 70 41193 208117 211589 211589 1 YLDSIPPGQYMDSSLVK RLYLIFEFLSMDLKKYLDSIPPGQYMDSSL DSIPPGQYMDSSLVKSYLYQILQGIVFCHS K Y L V K S 0 0 0 2 0 1 0 1 0 1 2 1 1 0 2 3 0 0 2 1 0 0 17 0 1911.9288 P06493;A0A024QZP7;A0A087WZZ9;E5RIU6 P06493 90 106 CDK1;CDC2 Cyclin-dependent kinase 1 yes no 2 4.8056E-06 84.289 By MS/MS By MS/MS By matching 1 1 1 0.7249 0.61919 10.462 3 Median 0.76398 0.70142 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59531 0.56978 NaN 1 1 Median 0.7249 0.61919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18767000 9858400 8908800 13821000 7048000 6773100 0 0 0 4245000 2375500 1869400 701180 434940 266240 0 0 0 0 0 0 39229 1871 41194 208118;208119;208120 211590;211591;211592;211593;211594;211595;211596 211591 7 YLDSLGNPSANGLYDLALGPADSK EELKKLSVKSITNPRYLDSLGNPSANGLYD ANGLYDLALGPADSKEVCSTCVQDFSNCSG R Y L S K E 3 0 2 3 0 0 0 3 0 0 5 1 0 0 2 3 0 0 2 0 0 0 24 0 2450.1965 O95602;B9ZVN9 O95602 38 61 POLR1A DNA-directed RNA polymerase I subunit RPA1;DNA-directed RNA polymerase yes no 3 0.017398 14.584 By MS/MS 1 0.64626 0.71707 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.64626 0.71707 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1527800 865870 661970 0 0 0 0 0 0 1527800 865870 661970 0 0 0 0 0 0 0 0 0 39230 1781 41195 208121 211597;211598 211598 2 YLEAGAAGLR ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ LLVGRYLEAGAAGLRWRAAQLIGTCSQNVA R Y L L R W 3 1 0 0 0 0 1 2 0 0 2 0 0 0 0 0 0 0 1 0 0 0 10 0 1019.54 Q9NZL4;K7EN20;K7EMM7;K7EL16 Q9NZL4 153 162 HSPBP1 Hsp70-binding protein 1 yes no 2 0.00034627 105.57 By MS/MS By MS/MS By MS/MS 2 2 1 1.329 1.1831 41.963 5 Median 1.2711 1.2278 5.2494 2 0 Median 1.366 1.1655 1.0759 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3.5631 3.0458 NaN 1 0 Median 36347000 16228000 20119000 26227000 11816000 14411000 9036500 4012400 5024200 0 0 0 0 0 0 0 0 0 1082600 399130 683510 39231 4190 41196 208122;208123;208124;208125;208126 211599;211600;211601;211602;211603;211604 211600 6 YLEANMTQSALPK LELKLQELSAEERQKYLEANMTQSALPKII QKYLEANMTQSALPKIIKAGFAALQLEYFF K Y L P K I 2 0 1 0 0 1 1 0 0 0 2 1 1 0 1 1 1 0 1 0 0 0 13 0 1464.7283 J3KQ32;Q9NTK5 J3KQ32 302 314 OLA1 Obg-like ATPase 1 yes no 2 6.9595E-07 104.22 By MS/MS By matching By MS/MS By MS/MS 3 1 3 2 0.94099 0.96853 50.533 9 Median 0.94099 0.86588 85.64 3 0 Median 0.93384 0.80211 NaN 1 0 Median 1.026 1.0655 6.0834 3 0 Median 1.0889 0.94271 40.333 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 74053000 34728000 39325000 46148000 23068000 23080000 3692900 1831400 1861400 17904000 6895200 11009000 6307800 2933400 3374400 0 0 0 0 0 0 39232 1315 41197;41198 208127;208128;208129;208130;208131;208132;208133;208134;208135 211605;211606;211607;211608;211609;211610;211611;211612 211606 437 8 YLEATGQLPVK YQPCLPSTQEDVINKYLEATGQLPVKKGKA VINKYLEATGQLPVKKGKAKN_________ K Y L V K K 1 0 0 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 1 1 0 0 11 0 1217.6656 Q96RP9 Q96RP9 735 745 GFM1 Elongation factor G, mitochondrial yes yes 2 0.014454 71.223 By matching By MS/MS By matching 1 2 1 1.1936 1.097 11.86 4 Median 1.208 1.1617 NaN 1 0 Median 1.2989 1.1446 14.105 2 0 Median NaN NaN NaN 0 0 Median 1.1063 0.9686 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7910200 3520700 4389500 3507800 1557400 1950300 3956100 1754300 2201800 0 0 0 446290 208940 237350 0 0 0 0 0 0 39233 3728 41199 208136;208137;208138;208139 211613 211613 0 YLEAVEK YKEKALSVETEKLLKYLEAVEKVKRTRDEL VETEKLLKYLEAVEKVKRTRDELEVIHLIE K Y L E K V 1 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 850.44363 P10155 P10155 228 234 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 0.016334 68.915 By MS/MS By MS/MS By matching 1 1 1 1.3117 1.1232 30.16 3 Median 0.75727 0.72758 NaN 1 0 Median 1.3117 1.1232 NaN 1 0 Median 1.3686 1.2991 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6363400 3210200 3153200 2658100 1555900 1102200 2589400 1108200 1481200 1116000 546050 569930 0 0 0 0 0 0 0 0 0 39234 1934 41200 208140;208141;208142 211614;211615 211615 2 YLECSALQQDGVK PQQGQALAKQIHAVRYLECSALQQDGVKEV VRYLECSALQQDGVKEVFAEAVRAVLNPTP R Y L V K E 1 0 0 1 1 2 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 13 0 1509.7133 P84095 P84095 154 166 RHOG Rho-related GTP-binding protein RhoG yes yes 2 0.0015124 52.579 By MS/MS 1 1.3406 1.1599 NaN 1 Median NaN NaN NaN 0 0 Median 1.3406 1.1599 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1798500 984340 814130 0 0 0 1798500 984340 814130 0 0 0 0 0 0 0 0 0 0 0 0 39235 2667 41201 208143 211616;211617 211616 2 YLECSALTQR YPQGLAMAKEIGAVKYLECSALTQRGLKTV IGAVKYLECSALTQRGLKTVFDEAIRAVLC K Y L Q R G 1 1 0 0 1 1 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 10 0 1239.5918 P63000;B1AH77;B1AH80;P15153;B1AH78;P60763;J3KSC4;J3QLK0 P63000 154 163 RAC1;RAC2;RAC3 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3 no no 2 0.00055052 116.52 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.0619 1.0021 35.837 5 Median 1.0149 0.98646 2.2255 2 1 Median 1.2488 1.0343 NaN 1 0 Median 0.69375 0.64967 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.7511 1.7764 NaN 1 0 Median NaN NaN NaN 0 0 Median 35747000 15464000 20283000 7667200 3262700 4404500 25838000 11169000 14669000 1390500 761190 629300 0 0 0 850800 271030 579770 0 0 0 39236 2615;2528 41202 208144;208145;208146;208147;208148 211618;211619;211620 211620 3 YLEDFITNITNISQETVHTTR VQIIINTTHLEQACKYLEDFITNITNISQE TNITNISQETVHTTRLYGLSTFKDARHAAE K Y L T R L 0 1 2 1 0 1 2 0 1 3 1 0 0 1 0 1 5 0 1 1 0 0 21 0 2494.234 E7EW84;Q8TAG9;F2Z3K0 E7EW84 460 480 EXOC6 Exocyst complex component 6 yes no 3 0.057448 7.8971 By MS/MS 1 1.1028 0.97033 NaN 1 Median NaN NaN NaN 0 0 Median 1.1028 0.97033 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1444200 652070 792110 0 0 0 1444200 652070 792110 0 0 0 0 0 0 0 0 0 0 0 0 39237 900 41203 208149 211621 211621 1 YLEDGGLER YILEKFSTWTNTEFRYLEDGGLERKFSLDD TNTEFRYLEDGGLERKFSLDDLLTNVMLYW R Y L E R K 0 1 0 1 0 0 2 2 0 0 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1050.4982 P07099 P07099 339 347 EPHX1 Epoxide hydrolase 1 yes yes 2 0.00027579 113.71 By MS/MS By MS/MS 1 1 1.4311 1.3173 0.61854 2 Median 1.3585 1.3231 NaN 1 1 Median 1.5077 1.3116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11612000 4689200 6922800 6134600 2650800 3483800 5477300 2038300 3439000 0 0 0 0 0 0 0 0 0 0 0 0 39238 1879 41204 208150;208151 211622;211623;211624 211622 3 YLEEERPFAIEQVTGMLLAK ELQKMPNGSAGVKVRYLEEERPFAIEQVTG RPFAIEQVTGMLLAKLKETSENALKKPVAD R Y L A K L 2 1 0 0 0 1 4 1 0 1 3 1 1 1 1 0 1 0 1 1 0 0 20 1 2336.2086 O95757;E9PDE8 O95757 105 124 HSPA4L Heat shock 70 kDa protein 4L yes no 3 7.0726E-09 77.39 By MS/MS By MS/MS By matching 1 1 1 1.1576 1.1452 19.378 3 Median 1.0561 1.0986 NaN 1 0 Median 1.1576 1.1452 NaN 1 0 Median 1.3718 1.5659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23658000 10250000 13408000 3632300 1626200 2006100 19106000 8205700 10900000 919550 417970 501580 0 0 0 0 0 0 0 0 0 39239 1790 41205 208152;208153;208154 211625;211626;211627;211628 211628 4 YLEEIATQMR QGGSILGTKRVLPGKYLEEIATQMRTHSIN VLPGKYLEEIATQMRTHSINALLIIGGFEA K Y L M R T 1 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1252.6122 Q01813;B1APP6;H0Y3Y3 Q01813 487 496 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes no 2 4.4862E-05 138.1 By MS/MS By MS/MS By matching 3 3 1 1.3308 1.1894 44.442 7 Median 1.2459 1.1894 37.613 3 0 Median 1.3308 1.151 38.767 3 0 Median 3.0008 3.2043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 95793000 43803000 51990000 63937000 30909000 33029000 29754000 12159000 17595000 2101700 735140 1366600 0 0 0 0 0 0 0 0 0 39240 2692 41206;41207 208155;208156;208157;208158;208159;208160;208161 211629;211630;211631;211632 211630 1388 4 YLEETNSLPAPAR TPPGYPNVKHFSWDKYLEETNSLPAPARAF DKYLEETNSLPAPARAFKVKPPHGFQKKMK K Y L A R A 2 1 1 0 0 0 2 0 0 0 2 0 0 0 2 1 1 0 1 0 0 0 13 0 1459.7307 Q96JM7 Q96JM7 453 465 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 yes yes 2 0.0014668 53.327 By MS/MS 1 0.96896 0.83476 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96896 0.83476 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1493900 658270 835580 0 0 0 0 0 0 0 0 0 1493900 658270 835580 0 0 0 0 0 0 39241 3688 41208 208162 211633 211633 1 YLEEVMK IGVVQTAYANGSSTRYLEEVMKVPVYCTKT YANGSSTRYLEEVMKVPVYCTKTGVKHLHH R Y L M K V 0 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 7 0 910.447 H0Y987;O95394;A0A494C0G1;A0A494C1Q4;J3KN95;A0A494C1E2;A0A087WT27 H0Y987 337 343 PGM3 Phosphoacetylglucosamine mutase yes no 2 0.022229 58.167 By MS/MS By MS/MS 1 1 1.1323 1.0087 13.735 2 Median 1.173 1.1116 NaN 1 0 Median 1.093 0.91535 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19875000 8982600 10892000 8130000 3703600 4426400 11745000 5279000 6465800 0 0 0 0 0 0 0 0 0 0 0 0 39242 1165 41209 208163;208164 211634;211635;211636 211635 3 YLEGTGSVAGVVLLPEGHKK RLAAVDVSARAEVRRYLEGTGSVAGVVLLP GSVAGVVLLPEGHKKSFFQAATEHLLPMGT R Y L K K S 1 0 0 0 0 0 2 4 1 0 3 2 0 0 1 1 1 0 1 3 0 0 20 1 2053.1208 P58107;A0A075B730 P58107 280 299 EPPK1 Epiplakin yes no 3 7.6832E-05 37.379 By MS/MS 1 0.57752 0.62917 NaN 1 Median 0.57752 0.62917 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11455000 6049900 5405400 11455000 6049900 5405400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39243 2520 41210 208165 211637 211637 1 YLEGTSCIAGVLVPAK RSTTQELMEDDRVKRYLEGTSCIAGVLVPA LEGTSCIAGVLVPAKDQPGRQEKMSIYQAM R Y L A K D 2 0 0 0 1 0 1 2 0 1 2 1 0 0 1 1 1 0 1 2 0 0 16 0 1676.8807 P58107;A0A075B730 P58107 2219 2234 EPPK1 Epiplakin yes no 2 0.00013688 58.37 By MS/MS 3 1.2187 1.0866 6.5693 3 Median NaN NaN NaN 0 0 Median 1.2187 1.0866 6.5693 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24622000 11799000 12824000 0 0 0 24622000 11799000 12824000 0 0 0 0 0 0 0 0 0 0 0 0 39244 2520 41211 208166;208167;208168 211638 211638 1 YLEGTSCIAGVLVPAKDQPGR RSTTQELMEDDRVKRYLEGTSCIAGVLVPA CIAGVLVPAKDQPGRQEKMSIYQAMWKGVL R Y L G R Q 2 1 0 1 1 1 1 3 0 1 2 1 0 0 2 1 1 0 1 2 0 0 21 1 2230.1416 P58107;A0A075B730 P58107 2219 2239 EPPK1 Epiplakin yes no 3 0.067749 7.8971 By MS/MS 1 0.91088 0.85417 NaN 1 Median NaN NaN NaN 0 0 Median 0.91088 0.85417 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3876900 1842100 2034800 0 0 0 3876900 1842100 2034800 0 0 0 0 0 0 0 0 0 0 0 0 39245 2520 41212 208169 211639 211639 1 YLEHGEYEGNLYGTK FVSRSEMEADIKAGKYLEHGEYEGNLYGTK YLEHGEYEGNLYGTKIDSILEVVQTGRTCI K Y L T K I 0 0 1 0 0 0 3 3 1 0 2 1 0 0 0 0 1 0 3 0 0 0 15 0 1771.8053 Q9NZW5;B8ZZG1 Q9NZW5 404 418 MPP6 MAGUK p55 subfamily member 6 yes no 3 0.0043739 26.781 By MS/MS By matching By matching By matching 1 1 1 1 1.1277 1.0277 31.081 4 Median 0.87878 0.82852 NaN 1 0 Median 1.8276 1.571 NaN 1 0 Median 0.84903 0.84762 NaN 1 0 Median 1.4471 1.2459 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19027000 10419000 8607800 9920200 6035400 3884900 1998300 772950 1225400 5749900 3084600 2665300 1358800 526550 832240 0 0 0 0 0 0 39246 647 41213 208170;208171;208172;208173 211640 211640 1 YLEKPMEIAR YQHNLRRIKQFLQSRYLEKPMEIARIVARC FLQSRYLEKPMEIARIVARCLWEESRLLQT R Y L A R I 1 1 0 0 0 0 2 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 10 1 1248.6536 P40763 P40763 94 103 STAT3 Signal transducer and activator of transcription 3 yes yes 3 0.015234 41.704 By MS/MS 1 1.0077 1.033 NaN 1 Median 1.0077 1.033 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3723100 1897800 1825300 3723100 1897800 1825300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39247 2289 41214 208174 211641 211641 1 YLELLER YGSIDFGKTVVSHPRYLELLERTSRPLKIL KTVVSHPRYLELLERTSRPLKILRHQVLND R Y L E R T 0 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 934.51238 O75153;K7EIG1;I3L2B0;A0A494C0R8 O75153 517 523 CLUH Clustered mitochondria protein homolog yes no 2 0.03302 48.504 By MS/MS 1 1.0351 0.99884 NaN 1 Median 1.0351 0.99884 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4116300 2017400 2098900 4116300 2017400 2098900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39248 1651 41215 208175 211642 211642 1 YLELLGYR WSFLKVNFEDDSRGKYLELLGYRKEDLGKK EDDSRGKYLELLGYRKEDLGKKIALALNKV K Y L Y R K 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 2 0 0 0 8 0 1025.5546 D6REX3;O94979;D6RHZ5;H7BXG7;H0YAB3;H0Y8V7;H0Y9K1 D6REX3 489 496 SEC31A Protein transport protein Sec31A yes no 2 0.00086645 97.071 By MS/MS 2 1.1379 1.109 0.93557 2 Median 1.1379 1.109 0.93557 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6078400 2965700 3112800 6078400 2965700 3112800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39249 823 41216 208176;208177 211643;211644 211644 2 YLENGKETLQR LRAYLDGTCVEWLRRYLENGKETLQRTDPP WLRRYLENGKETLQRTDPPKTHMTHHPISD R Y L Q R T 0 1 1 0 0 1 2 1 0 0 2 1 0 0 0 0 1 0 1 0 0 0 11 1 1349.6939 P10321;A0A140T9H5;A0A140T9U8;A2AEA2;A0A140T921;O19617;A0A1W2PRU9;A0A140T9L3;A0A140TA05;A0A140T942;A0A140T9E1;A0A0G2JNV5;A0A140T9J8;P30511;P04439;Q5SRN5;Q5SRN7;A0A1W2PS24;A0A0G2JL56;A0A0G2JIF2;A0A1W2PSE7;A0A0G2JI36;A0A1W2PQD0;A0A0G2JH66;A0A0G2JPA3;D0EV57;A0A140T9X6;A0A140T939;A0A140T8X0;A0A140T9C2;A0A140T9D9;A0A140T9W3;A0A140T9W7;A0A140T9B7;A0A140T9V0 P04439 195 205 HLA-C;HLA-F;HLA-A HLA class I histocompatibility antigen, Cw-7 alpha chain;HLA class I histocompatibility antigen, alpha chain F;HLA class I histocompatibility antigen, A-3 alpha chain no no 3 0.024508 24.254 By MS/MS 1 1.1392 1.2183 NaN 1 Median 1.1392 1.2183 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1191100 582590 608550 1191100 582590 608550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39250 348;314 41217 208178 211645 211645 1 YLENQTFR VVMVHEPKQKVDLTRYLENQTFRFDYAFDD QKVDLTRYLENQTFRFDYAFDDSAPNEMVY R Y L F R F 0 1 1 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 1069.5193 O00139;D6R9M0 O00139 268 275 KIF2A Kinesin-like protein KIF2A no no 2 8.9252E-05 111.01 By MS/MS By MS/MS By matching 1 2 2 1.8039 1.5167 64.873 5 Median 1.3621 1.301 NaN 1 1 Median 1.8347 1.5893 2.1894 2 1 Median NaN NaN NaN 0 0 Median 0.81069 0.73323 102.79 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17310000 7044800 10265000 5502800 2570600 2932200 8682300 2975700 5706600 0 0 0 3124700 1498400 1626300 0 0 0 0 0 0 39251 1440;804 41218 208179;208180;208181;208182;208183 211646;211647;211648 211646 3 YLENYDAIR FLEESVSMSPEERARYLENYDAIRVTHETS PEERARYLENYDAIRVTHETSAHEGQTEAP R Y L I R V 1 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 9 0 1155.556 P15374;A0A087WTB8;Q5TBK7 P15374 137 145 UCHL3 Ubiquitin carboxyl-terminal hydrolase isozyme L3;Ubiquitin carboxyl-terminal hydrolase yes no 2 0.0004831 121.62 By MS/MS By MS/MS By matching 1 1 1 1.1397 1.0843 7.7077 3 Median 1.1398 1.0843 NaN 1 0 Median 1.1252 0.95158 NaN 1 0 Median 1.1397 1.0905 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69868000 31697000 38170000 56487000 25496000 30991000 9188800 4264400 4924400 4191800 1936800 2255000 0 0 0 0 0 0 0 0 0 39252 2017 41219 208184;208185;208186 211649;211650;211651;211652 211652 4 YLEPLYNDYR ALYMRLTGTAIDCYKYLEPLYNDYRKIKSQ IDCYKYLEPLYNDYRKIKSQNRNGEFELMH K Y L Y R K 0 1 1 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 3 0 0 0 10 0 1344.635 Q8NAV1 Q8NAV1 119 128 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 3.0618E-05 143.01 By matching By MS/MS By MS/MS 1 1 1 0.98457 1.0628 17.75 3 Plateau NaN NaN NaN 0 0 Median 0.86219 0.77608 NaN 1 0 Median 1.0123 1.1049 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.92629 0.95497 NaN 1 0 Median NaN NaN NaN 0 0 Median 20947000 10005000 10942000 0 0 0 250930 125540 125390 14162000 6641100 7520600 0 0 0 6534800 3238700 3296100 0 0 0 39253 3400 41220 208187;208188;208189 211653;211654 211653 2 YLEPLYNDYRK ALYMRLTGTAIDCYKYLEPLYNDYRKIKSQ DCYKYLEPLYNDYRKIKSQNRNGEFELMHV K Y L R K I 0 1 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 3 0 0 0 11 1 1472.73 Q8NAV1 Q8NAV1 119 129 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2;3 0.0001357 85.676 By MS/MS By MS/MS 2 2 0.94863 1.056 16.813 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0237 1.1642 14.982 2 1 Median NaN NaN NaN 0 0 Median 0.877 0.95566 15.292 2 1 Median NaN NaN NaN 0 0 Median 38601000 19675000 18925000 0 0 0 0 0 0 14481000 7082100 7398500 0 0 0 24120000 12593000 11527000 0 0 0 39254 3400 41221 208190;208191;208192;208193 211655;211656;211657;211658;211659;211660 211656 6 YLEQLHQLYSDSFPMELR ______________________________ QLHQLYSDSFPMELRQFLAPWIESQDWAYA R Y L L R Q 0 1 0 1 0 2 2 0 1 0 4 0 1 1 1 2 0 0 2 0 0 0 18 0 2268.0885 P40763;K7EP08 P40763 14 31 STAT3 Signal transducer and activator of transcription 3 yes no 3 8.5183E-05 40.515 By MS/MS 1 0.86756 0.84928 NaN 1 Median 0.86756 0.84928 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2699400 1357900 1341600 2699400 1357900 1341600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39255 2289 41222 208194 211661;211662 211662 2 YLESAGAR MKNYGRYYIAASYVKYLESAGARVVPVRLD IAASYVKYLESAGARVVPVRLDLTEKDYEI K Y L A R V 2 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 8 0 865.42938 Q92820 Q92820 63 70 GGH Gamma-glutamyl hydrolase yes yes 2 0.016506 68.915 By MS/MS By MS/MS 2 2 1.0829 1.005 30.868 4 Median 0.83559 0.82214 26.046 2 0 Median 1.4245 1.2195 25.006 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2862200 1382600 1479600 1005800 583020 422800 1856400 799610 1056800 0 0 0 0 0 0 0 0 0 0 0 0 39256 3560 41223 208195;208196;208197;208198 211663;211664;211665 211665 3 YLESEEYQER LSSVPISPYKDEPWKYLESEEYQERYGSRP DEPWKYLESEEYQERYGSRPVWADYRRNHK K Y L E R Y 0 1 0 0 0 1 4 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 10 0 1344.5834 Q9Y676;A0A0G2JIC6 Q9Y676 58 67 MRPS18B 28S ribosomal protein S18b, mitochondrial yes no 2 0.00046631 120.07 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.153 1.0301 19.11 4 Median 0.94679 0.89649 NaN 1 0 Median 1.404 1.1678 NaN 1 0 Median 0.93002 0.90864 NaN 1 0 Median 1.5838 1.3208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16663000 7741700 8921600 4930600 2538600 2392000 7246200 3016200 4230000 2174700 1205800 968900 2311800 981140 1330700 0 0 0 0 0 0 39257 4480 41224 208199;208200;208201;208202 211666;211667;211668;211669;211670;211671;211672 211672 7 YLESLVQTQQQLIK FEKERVKDFKTVIIKYLESLVQTQQQLIKY KYLESLVQTQQQLIKYWEAFLPEAKAIA__ K Y L I K Y 0 0 0 0 0 4 1 0 0 1 3 1 0 0 0 1 1 0 1 1 0 0 14 0 1689.9301 O60749 O60749 493 506 SNX2 Sorting nexin-2 yes yes 2 0.00015793 79.974 By MS/MS By matching By MS/MS 2 1 1 1.3172 1.2261 17.655 4 Median 1.3 1.2261 13.259 2 0 Median 1.219 1.0501 NaN 1 0 Median 1.4549 1.5447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18779000 8237900 10541000 11459000 5174300 6284500 2765400 1189800 1575600 4554700 1873800 2680900 0 0 0 0 0 0 0 0 0 39258 1629 41225 208203;208204;208205;208206 211673;211674;211675 211673 3 YLETADYAIR CDRSNAKQIVSEMLRYLETADYAIREEIVL SEMLRYLETADYAIREEIVLKVAILAEKYA R Y L I R E 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 2 0 0 0 10 0 1213.5979 O95782 O95782 412 421 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.012353 60.436 By MS/MS By MS/MS 1 2 1.3789 1.2081 NaN 1 Median NaN NaN NaN 0 0 Median 1.3789 1.2081 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1620900 675350 945510 0 0 0 1620900 675350 945510 0 0 0 0 0 0 0 0 0 0 0 0 39259 1793 41226 208207;208208;208209 211676;211677;211678 211676 3 YLETHPRPPKPDPVK VLKQAVRKPLEAVLRYLETHPRPPKPDPVK YLETHPRPPKPDPVKSVSSVLSSLTPAKVA R Y L V K S 0 1 0 1 0 0 1 0 1 0 1 2 0 0 5 0 1 0 1 1 0 0 15 2 1772.9574 E7ESY4;Q13330;H0Y4T7;F8W9Y9 E7ESY4 540 554 MTA1 Metastasis-associated protein MTA1 yes no 4 0.01295 23.956 By matching By MS/MS By MS/MS 1 1 1 0.65568 0.69395 37.466 3 Median NaN NaN NaN 0 0 Median 0.65568 0.69395 NaN 1 0 Median 0.34299 0.39116 NaN 1 0 Median 0.74028 0.79126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14660000 10557000 4103100 0 0 0 607460 344010 263450 11224000 8510400 2713900 2827900 1702200 1125800 0 0 0 0 0 0 39260 888 41227 208210;208211;208212 211679;211680;211681;211682 211681 4 YLETLLYSQQQLAK FEKEKSKDFKNHVIKYLETLLYSQQQLAKY KYLETLLYSQQQLAKYWEAFLPEAKAIS__ K Y L A K Y 1 0 0 0 0 3 1 0 0 0 4 1 0 0 0 1 1 0 2 0 0 0 14 0 1696.9036 Q13596;H0YK42 Q13596 496 509 SNX1 Sorting nexin-1 yes no 2 0.0025473 42.395 By MS/MS By matching 1 1 1.0068 0.92869 2.6961 2 Median 0.98548 0.94657 NaN 1 0 Median 1.0286 0.91115 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4529500 2190200 2339400 3889000 1910200 1978800 640570 279980 360600 0 0 0 0 0 0 0 0 0 0 0 0 39261 2829 41228 208213;208214 211683;211684 211684 2 YLEVEPVSR MVASFSILGMLVGLRYLEVEPVSRQKKRN_ MLVGLRYLEVEPVSRQKKRN__________ R Y L S R Q 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 1 2 0 0 9 0 1090.5659 Q9UKR5 Q9UKR5 127 135 C14orf1 Probable ergosterol biosynthetic protein 28 yes yes 2 0.00058525 111.95 By MS/MS By MS/MS 1 2 1.1566 1.0743 13.358 2 Median NaN NaN NaN 0 0 Median 1.3852 1.1807 NaN 1 0 Median 0.96581 0.97748 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28467000 12161000 16306000 0 0 0 25611000 10676000 14934000 2855800 1484500 1371400 0 0 0 0 0 0 0 0 0 39262 4315 41229 208215;208216;208217 211685;211686;211687 211687 3 YLEVQYKPQVHIQMTYPLQGLTR QVEHPAVTGNLQTQRYLEVQYKPQVHIQMT QVHIQMTYPLQGLTREGDALELTCEAIGKP R Y L T R E 0 1 0 0 0 4 1 1 1 1 3 1 1 0 2 0 2 0 3 2 0 0 23 1 2804.4684 A0A087X1W8;A0A0A0MTJ8;X5DQS5;Q9BY67;A0A087X0T8 A0A087X1W8 195 217 CADM1 Cell adhesion molecule 1 yes no 3 0.032578 12.929 By MS/MS 1 0.76201 0.78079 NaN 1 Median 0.76201 0.78079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2854300 1751600 1102700 2854300 1751600 1102700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39263 124 41230 208218 211688 211688 1 YLEVVLNTLQQASQAQVDK VFGDIALAIGGEFKKYLEVVLNTLQQASQA VLNTLQQASQAQVDKSDYDMVDYLNELRES K Y L D K S 2 0 1 1 0 4 1 0 0 0 3 1 0 0 0 1 1 0 1 3 0 0 19 0 2146.127 Q14974;J3KTM9 Q14974 731 749 KPNB1 Importin subunit beta-1 yes no 2;3 4.6926E-18 127.76 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 2 2 1 1 1.1616 1.1214 25.012 10 Median 0.9886 0.96182 NaN 1 0 Median 1.2853 1.1248 43.522 3 0 Plateau 1.0667 1.1749 4.7802 2 0 Median 1.3108 1.1419 2.99 2 0 Median 1.1027 1.1331 NaN 1 0 Median 1.2557 1.0984 NaN 1 0 Median 54825000 24887000 29938000 2912000 1300100 1611800 38804000 17474000 21330000 10684000 5084500 5599100 1735200 718920 1016200 590350 265910 324440 99368 43430 55938 39264 2904 41231 208219;208220;208221;208222;208223;208224;208225;208226;208227;208228 211689;211690;211691;211692;211693;211694;211695;211696;211697;211698;211699;211700;211701 211697 13 YLFLGDYVDR LMKLFEVGGSPANTRYLFLGDYVDRGYFSI PANTRYLFLGDYVDRGYFSIECVLYLWALK R Y L D R G 0 1 0 2 0 0 0 1 0 0 2 0 0 1 0 0 0 0 2 1 0 0 10 0 1259.6186 Q08209;E9PPC8;E9PK68;E7ETC2 Q08209 113 122 PPP3CA Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase no no 2 0.0050978 50.878 By MS/MS By MS/MS By MS/MS 2 1 1 1.1739 1.1643 21.569 4 Median 1.1115 1.107 15.321 2 0 Median 1.9428 1.6365 NaN 1 0 Median 1.1147 1.0989 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 14853000 6743000 8110200 3727500 1773100 1954300 8050400 3686400 4364000 3075400 1283500 1791900 0 0 0 0 0 0 0 0 0 39265 2735 41232 208229;208230;208231;208232 211702;211703;211704;211705;211706 211703 5 YLFLNAIANQLR DIFQNLAVDLDTEGRYLFLNAIANQLRYPN EGRYLFLNAIANQLRYPNSHTHYFSCTMLY R Y L L R Y 2 1 2 0 0 1 0 0 0 1 3 0 0 1 0 0 0 0 1 0 0 0 12 0 1434.7983 A5YKK6 A5YKK6 2264 2275 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.00039713 79.906 By MS/MS By MS/MS By MS/MS By matching By matching 1 2 1 1 1 1.1224 1.0433 20.279 6 Median 1.0668 1.0251 NaN 1 0 Median 0.94836 0.81633 29.865 2 0 Median 1.0008 1.113 NaN 1 0 Median 1.3266 1.1492 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2659 1.0618 NaN 1 0 Median 12904000 6012800 6891000 4462900 2138300 2324600 7127500 3227300 3900200 1122500 550680 571790 154790 77871 76917 0 0 0 36126 18663 17464 39266 503 41233 208233;208234;208235;208236;208237;208238 211707;211708;211709;211710;211711 211707 5 YLFNQLFGEEDADQEVSPDR RNTPSEPIHCIVWAKYLFNQLFGEEDADQE LFGEEDADQEVSPDRADPEAAWEPTEAEAR K Y L D R A 1 1 1 3 0 2 3 1 0 0 2 0 0 2 1 1 0 0 1 1 0 0 20 0 2371.0604 Q9UBT2;K7EPL2 Q9UBT2 191 210 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.00079096 34.685 By MS/MS By matching 1 1 0.82493 0.78472 4.2384 2 Median 0.76693 0.76155 NaN 1 0 Median 0.88731 0.80859 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1966200 1011300 954920 1252500 663510 589000 713720 347800 365920 0 0 0 0 0 0 0 0 0 0 0 0 39267 4247 41234 208239;208240 211712;211713 211713 2 YLFTGLK ENQLQLSCFINQEVKYLFTGLKLRLQEEIT CFINQEVKYLFTGLKLRLQEEITKQSPTLQ K Y L L K L 0 0 0 0 0 0 0 1 0 0 2 1 0 1 0 0 1 0 1 0 0 0 7 0 840.47454 A6NJA2;P54578 A6NJA2 239 245 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 yes no 2 0.014908 73.039 By MS/MS By matching By matching 1 2 1 1.2166 1.1077 9.7035 4 Median 1.121 1.0635 NaN 1 0 Median 1.2113 1.0488 13.476 2 0 Median NaN NaN NaN 0 0 Median 1.3442 1.1824 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11291000 5048300 6243000 7767500 3413900 4353600 3222100 1504000 1718100 0 0 0 301650 130380 171270 0 0 0 0 0 0 39268 523 41235 208241;208242;208243;208244 211714;211715 211715 2 YLFTLIR PLDDLDREDEVRLLKYLFTLIRAGMTEEAQ EDEVRLLKYLFTLIRAGMTEEAQRLCKRCG K Y L I R A 0 1 0 0 0 0 0 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 7 0 924.54329 P57740 P57740 349 355 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.028199 50.966 By matching By MS/MS By matching By matching By matching 1 3 2 1 1 1.2588 1.2993 12.543 8 Median 1.1069 1.1195 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2324 1.3089 13.275 3 0 Median 1.6056 1.3617 7.6626 2 0 Median 1.2722 1.3566 NaN 1 0 Median 1.2456 1.0344 NaN 1 0 Median 13497000 5896200 7600900 859350 387320 472020 0 0 0 10781000 4714200 6067100 661480 275090 386390 1078600 470470 608110 116370 49111 67257 39269 2518 41236 208245;208246;208247;208248;208249;208250;208251;208252 211716;211717 211717 2 YLGAMQVADK NDSEKVDRLMELHFKYLGAMQVADKKIEGE ELHFKYLGAMQVADKKIEGEKHDMVRRGEI K Y L D K K 2 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 10 0 1094.543 Q8WYA6;A0A087WUB9 Q8WYA6 448 457 CTNNBL1 Beta-catenin-like protein 1 yes no 2 0.00075444 71.614 By MS/MS By MS/MS By MS/MS 2 1 1 1.035 0.95502 14.909 4 Median 1.0415 1.0075 20.346 2 1 Median 1.0173 0.85168 NaN 1 0 Median 1.053 1.0453 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 59315000 29626000 29689000 15146000 7424900 7721100 12421000 6099600 6321000 31748000 16102000 15647000 0 0 0 0 0 0 0 0 0 39270 28 41237 208253;208254;208255;208256 211718;211719;211720 211719 3 YLGAMQVADKK NDSEKVDRLMELHFKYLGAMQVADKKIEGE LHFKYLGAMQVADKKIEGEKHDMVRRGEII K Y L K K I 2 0 0 1 0 1 0 1 0 0 1 2 1 0 0 0 0 0 1 1 0 0 11 1 1222.638 Q8WYA6;A0A087WUB9 Q8WYA6 448 458 CTNNBL1 Beta-catenin-like protein 1 yes no 2;3 3.9299E-05 85.377 By MS/MS By MS/MS By MS/MS 1 2 2 0.91183 0.94579 41.555 5 Median 1.0934 1.0415 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.94527 1.0553 15.499 2 0 Median 0.6358 0.58707 50.992 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23954000 11606000 12347000 1934400 983220 951140 0 0 0 20006000 9618100 10387000 2013800 1005100 1008700 0 0 0 0 0 0 39271 28 41238 208257;208258;208259;208260;208261 211721;211722;211723;211724;211725;211726 211723 6 YLGEGPR TAAFIRVVGSEFVQKYLGEGPRMVRDVFRL VGSEFVQKYLGEGPRMVRDVFRLAKENAPA K Y L P R M 0 1 0 0 0 0 1 2 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 790.39735 P43686 P43686 239 245 PSMC4 26S protease regulatory subunit 6B yes yes 2 0.038978 58.167 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2782600 0 2782600 0 0 0 2782600 0 2782600 0 0 0 0 0 0 0 0 0 0 0 0 39272 2327 41239 208262 211727 211727 1 YLGGSMDLSTFDFR SPSGKKFRSKPQLARYLGGSMDLSTFDFRT RYLGGSMDLSTFDFRTGKMLMSKMNKSRQR R Y L F R T 0 1 0 2 0 0 0 2 0 0 2 0 1 2 0 2 1 0 1 0 0 0 14 0 1607.729 O95983 O95983 52 65 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 2.5489E-05 85.958 By matching By MS/MS By matching By matching By matching 1 2 1 2 1 1.1208 1.1808 25.592 7 Median NaN NaN NaN 0 0 Median 1.0806 0.91595 NaN 1 0 Median 1.1384 1.1202 14.613 2 0 Median 1.0496 0.88047 NaN 1 0 Median 1.3979 1.4802 31.96 2 0 Median 1.5958 1.3193 NaN 1 0 Median 18782000 8166300 10616000 0 0 0 1002300 514700 487640 14573000 6398500 8174600 718760 332370 386390 2301300 880830 1420400 186400 39956 146440 39273 1804 41240;41241 208263;208264;208265;208266;208267;208268;208269 211728;211729;211730;211731 211731 576 4 YLGINSDGLVVGR KLSDSRIALKSGYGKYLGINSDGLVVGRSD GKYLGINSDGLVVGRSDAIGPREQWEPVFQ K Y L G R S 0 1 1 1 0 0 0 3 0 1 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1361.7303 Q14331;E9PRR7 Q14331 116 128 FRG1 Protein FRG1 yes no 2 1.5353E-08 127.4 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 0.64282 0.62599 59.383 7 Median 0.30209 0.28241 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.84023 0.79961 31.437 3 1 Median 0.81635 0.6808 NaN 1 1 Median 0.2814 0.28447 26.502 2 2 Median NaN NaN NaN 0 0 Median 62986000 43950000 19036000 32081000 24540000 7540300 0 0 0 19536000 11159000 8377500 2592400 1399600 1192900 8776900 6851600 1925300 0 0 0 39274 2874 41242 208270;208271;208272;208273;208274;208275;208276 211732;211733;211734;211735;211736;211737 211733 6 YLGLLAMSK QKLRILIEDSDQNLKYLGLLAMSKILKTHP SDQNLKYLGLLAMSKILKTHPKSVQSHKDL K Y L S K I 1 0 0 0 0 0 0 1 0 0 3 1 1 0 0 1 0 0 1 0 0 0 9 0 994.55214 O14617;A0A2R8Y611;A0A2R8Y4J3 O14617 321 329 AP3D1 AP-3 complex subunit delta-1 yes no 2 0.04318 32.841 By MS/MS By matching By matching 3 1 2 1.2105 1.1752 27.339 6 Median 1.1563 1.1552 2.215 3 0 Median 1.2966 1.1153 NaN 1 0 Median 1.5577 1.6589 44.121 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7720400 3426100 4294300 5942200 2716600 3225700 777780 347310 430470 1000400 362220 638130 0 0 0 0 0 0 0 0 0 39275 1485 41243 208277;208278;208279;208280;208281;208282 211738 211738 1 YLGLLENLR QPGRFDEVLIRHQVKYLGLLENLRVRRAGF IRHQVKYLGLLENLRVRRAGFAYRRKYEAF K Y L L R V 0 1 1 0 0 0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 F5H6E2;O00159 F5H6E2 624 632 MYO1C Unconventional myosin-Ic yes no 2 0.0073226 51.854 By matching By matching By MS/MS 1 1 1 1.2076 1.0335 11.784 3 Median NaN NaN NaN 0 0 Median 1.2076 1.0335 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2145 1.0831 NaN 1 0 Median 0.81266 0.86621 NaN 1 0 Median NaN NaN NaN 0 0 Median 3866900 1791400 2075500 0 0 0 2185500 981500 1204000 0 0 0 62640 24932 37708 1618800 784960 833810 0 0 0 39276 1042 41244 208283;208284;208285 211739 211739 1 YLGLLENVR AAHIFNEALVCHQIRYLGLLENVRVRRAGY VCHQIRYLGLLENVRVRRAGYAFRQAYEPC R Y L V R V 0 1 1 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 9 0 1075.6026 E9PDF6;O43795;Q9UBC5;G3V342 E9PDF6 618 626 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 2 0.0023677 72.485 By MS/MS By matching By MS/MS By matching By matching 1 1 1 1 1 1.1529 1.2431 17.759 5 Median 0.88577 0.87162 NaN 1 0 Median 1.5519 1.3258 NaN 1 0 Median 1.1529 1.2682 NaN 1 0 Median 1.2935 1.2431 NaN 1 0 Median 0.95772 1.0184 NaN 1 0 Median NaN NaN NaN 0 0 Median 12249000 5688100 6560500 2310800 1294800 1016000 3028100 1148700 1879400 4701700 2227600 2474000 225570 107850 117720 1982400 909140 1073300 0 0 0 39277 914 41245 208286;208287;208288;208289;208290 211740;211741 211741 2 YLGLPGSLK NSWFQHRPPGAPPERYLGLPGSLKWEDRGP GAPPERYLGLPGSLKWEDRGPSGQGQGQFL R Y L L K W 0 0 0 0 0 0 0 2 0 0 3 1 0 0 1 1 0 0 1 0 0 0 9 0 946.54877 Q13724;A0A3B3IRK6;A0A3B3IRW2;A0A3B3IS52 Q13724 297 305 MOGS Mannosyl-oligosaccharide glucosidase yes no 2 0.039605 33.797 By MS/MS 1 1.0481 1.0268 NaN 1 Median 1.0481 1.0268 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2416900 1176600 1240400 2416900 1176600 1240400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39278 2835 41246 208291 211742 211742 1 YLGNTVDLSSFDFR SPSGKKFRSKPQLARYLGNTVDLSSFDFRT RYLGNTVDLSSFDFRTGKMMPSKLQKNKQR R Y L F R T 0 1 1 2 0 0 0 1 0 0 2 0 0 2 0 2 1 0 1 1 0 0 14 0 1632.7784 Q9UBB5;X6RBL6 Q9UBB5 196 209 MBD2 Methyl-CpG-binding domain protein 2 yes no 2 8.1447E-05 88.441 By MS/MS 1 0.43671 0.43478 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43671 0.43478 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6966400 4101300 2865200 0 0 0 0 0 0 6966400 4101300 2865200 0 0 0 0 0 0 0 0 0 39279 4233 41247 208292 211743 211743 1 YLGQDYEQLR RARELGLGRHENAIKYLGQDYEQLRVRCLQ ENAIKYLGQDYEQLRVRCLQSGTLFRDEAF K Y L L R V 0 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 10 0 1283.6146 P07384;E9PRM1;E9PLX0;E9PJJ3;E9PLC9;E9PMC6;E9PJA6;E9PSA6;E9PQB3;E9PIA9 P07384 37 46 CAPN1 Calpain-1 catalytic subunit yes no 2 0.00036244 109.71 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 2 1.0749 0.97525 43.865 7 Median 1.0317 0.97525 NaN 1 0 Median 1.5117 1.3268 2.6255 2 0 Median 0.90736 0.92003 NaN 1 0 Median 1.4117 1.2164 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.67197 0.57798 61.232 2 0 Median 75663000 36612000 39051000 46714000 22617000 24096000 9079400 3499300 5580100 17336000 9374400 7961200 2037800 861530 1176200 0 0 0 496450 259000 237450 39280 1886 41248 208293;208294;208295;208296;208297;208298;208299 211744;211745;211746;211747;211748 211745 5 YLGYANEVGEAFR PRGAERDLYRDTWVRYLGYANEVGEAFRSL VRYLGYANEVGEAFRSLVPAAVVWLSYGVA R Y L F R S 2 1 1 0 0 0 2 2 0 0 1 0 0 1 0 0 0 0 2 1 0 0 13 0 1487.7045 B5MC22;Q9UDX5;F8WEN7 B5MC22 21 33 MTFP1 Mitochondrial fission process protein 1 yes no 2 9.1756E-07 100.48 By MS/MS By MS/MS 1 1 1.3285 1.1986 11.157 2 Median 1.1352 1.1077 NaN 1 0 Median 1.5548 1.297 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9113700 3928800 5184900 8329300 3621400 4707800 784470 307370 477100 0 0 0 0 0 0 0 0 0 0 0 0 39281 617 41249 208300;208301 211749;211750;211751 211750 3 YLGYLEQLLR VEQKHIQKEDVPSERYLGYLEQLLRLKKYK VPSERYLGYLEQLLRLKKYKVPQLEIVPNS R Y L L R L 0 1 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 2 0 0 0 10 0 1266.6972 CON__P02662 CON__P02662 91 100 yes yes 2 0.0010468 81.594 By MS/MS By MS/MS By MS/MS 1 1 1 0.059122 0.060223 48.874 2 Median 0.085649 0.085085 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.040811 0.042626 NaN 1 1 Median NaN NaN NaN 0 0 Median 1420200 1328000 92214 726420 669020 57404 0 0 0 0 0 0 0 0 0 693750 658940 34810 0 0 0 + 39282 742 41250 208302;208303;208304 211752;211753;211754 211754 3 YLHDESGLNR CFKTIISYIDEQFERYLHDESGLNRRHIID EQFERYLHDESGLNRRHIIDNRVHCCFYFI R Y L N R R 0 1 1 1 0 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1202.568 Q15019;B5MCX3;C9J2Q4;C9JB25;H7C310;C9J938;C9IY94 Q15019 129 138 SEPT2 Septin-2 yes no 2;3 0.00010924 88.496 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 3 1 1.0238 0.93949 18.954 9 Median NaN NaN NaN 0 0 Median 0.91331 0.77827 NaN 1 0 Median 0.97204 1.0629 10.726 4 0 Median 1.3051 1.0998 28.387 3 0 Plateau NaN NaN NaN 0 0 Median 1.0331 0.91075 NaN 1 0 Median 58698000 28030000 30668000 0 0 0 1607600 718020 889610 44498000 21821000 22677000 12264000 5324200 6939300 0 0 0 328410 166510 161900 39283 2914 41251 208305;208306;208307;208308;208309;208310;208311;208312;208313 211755;211756;211757;211758;211759;211760;211761;211762;211763;211764;211765;211766 211762 12 YLHDESGLNRR CFKTIISYIDEQFERYLHDESGLNRRHIID QFERYLHDESGLNRRHIIDNRVHCCFYFIS R Y L R R H 0 2 1 1 0 0 1 1 1 0 2 0 0 0 0 1 0 0 1 0 0 0 11 1 1358.6691 Q15019;B5MCX3;C9J2Q4;C9JB25;H7C310;C9J938;C9IY94 Q15019 129 139 SEPT2 Septin-2 yes no 2;3 4.5593E-05 76.143 By MS/MS By MS/MS By MS/MS 1 4 3 1.1665 1.1192 9.4929 8 Median NaN NaN NaN 0 0 Median 1.4011 1.3085 NaN 1 0 Median 1.032 1.0779 4.948 4 0 Median 1.2966 1.1414 7.8078 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 45136000 21222000 23914000 0 0 0 1681700 803360 878310 33965000 16283000 17682000 9489700 4136300 5353500 0 0 0 0 0 0 39284 2914 41252 208314;208315;208316;208317;208318;208319;208320;208321 211767;211768;211769;211770;211771;211772;211773 211772 7 YLHDLGIVHR RDASRLIFQVLDAVKYLHDLGIVHRDLKPE LDAVKYLHDLGIVHRDLKPENLLYYSLDED K Y L H R D 0 1 0 1 0 0 0 1 2 1 2 0 0 0 0 0 0 0 1 1 0 0 10 0 1221.6618 Q14012;C9JES6 Q14012 131 140 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 yes no 2;3 0.00025278 70.028 By MS/MS By MS/MS By matching 2 1 1 0.87449 0.87457 33.746 4 Median 0.88137 0.87457 11.707 2 1 Median 0.54699 0.4716 NaN 1 0 Median 0.94255 0.97383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13412000 6764500 6647000 11681000 5848100 5832700 1008500 590560 417990 722200 325890 396310 0 0 0 0 0 0 0 0 0 39285 2852 41253 208322;208323;208324;208325 211774;211775;211776;211777 211775 4 YLHEALMQNEITK GITLYQENITNACYKYLHEALMQNEITKMS YKYLHEALMQNEITKMSIIDKLKPFSFILV K Y L T K M 1 0 1 0 0 1 2 0 1 1 2 1 1 0 0 0 1 0 1 0 0 0 13 0 1588.7919 Q9NZJ4 Q9NZJ4 2322 2334 SACS Sacsin yes yes 3 0.0042632 33.195 By matching By matching By matching By MS/MS 1 1 1 1 1.1868 1.1043 8.337 4 Linear 1.1428 1.135 NaN 1 0 Median 1.2297 1.0744 NaN 1 0 Median 1.1205 1.2088 NaN 1 0 Median 1.0506 0.99326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15532000 6243700 9288800 4647300 2000600 2646700 5563500 1807100 3756400 4240700 1876800 2363900 1081000 559270 521710 0 0 0 0 0 0 39286 4189 41254 208326;208327;208328;208329 211778 211778 1 YLHENLPIPQR KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ GSLKYLHENLPIPQRNTN____________ K Y L Q R N 0 1 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 0 1 0 0 0 11 0 1378.7357 P54886 P54886 782 792 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 4.9897E-05 149.94 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 2 5 2 2 1.099 1.0157 42.853 11 Median 1.0717 1.0136 7.3505 2 1 Median 1.1555 0.99885 2.3667 2 0 Median 0.96602 1.0013 31.235 4 0 Median 0.83128 0.71645 NaN 1 0 Median 1.8521 1.9019 84.83 2 0 Median NaN NaN NaN 0 0 Median 211770000 111400000 100370000 47058000 19598000 27460000 24102000 10861000 13241000 124580000 73194000 51382000 9496600 5270200 4226400 6534400 2473800 4060500 0 0 0 39287 2488 41255 208330;208331;208332;208333;208334;208335;208336;208337;208338;208339;208340;208341;208342 211779;211780;211781;211782;211783;211784;211785;211786;211787;211788;211789;211790;211791;211792;211793;211794;211795;211796;211797;211798;211799;211800;211801;211802 211779 24 YLHPPPHLK CFDSLKGRCSRENCKYLHPPPHLKTQLEIN SRENCKYLHPPPHLKTQLEINGRNNLIQQK K Y L L K T 0 0 0 0 0 0 0 0 2 0 2 1 0 0 3 0 0 0 1 0 0 0 9 0 1100.6131 C9JP00;A0A0A0MQX8;Q9NR56;Q86VM6;H7C4T5;C9J4T8;B1AKI6;Q9NUK0 C9JP00 68 76 MBNL1;MBNL3 Muscleblind-like protein 1;Muscleblind-like protein 3 yes no 2 0.015919 43.124 By matching By MS/MS By matching 1 2 1 0.65919 0.63438 7.8017 4 Median 0.67726 0.65907 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.61615 0.65161 12.093 2 0 Median 0.72652 0.6106 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4760600 2840200 1920400 278430 116400 162020 0 0 0 4073400 2485500 1587900 408770 238290 170480 0 0 0 0 0 0 39288 150 41256 208343;208344;208345;208346 211803 211803 1 YLHPSSYTK KVLGRLKDEEIRCRKYLHPSSYTKVIHECQ EIRCRKYLHPSSYTKVIHECQQRMVADHLQ K Y L T K V 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 2 1 0 2 0 0 0 9 0 1094.5397 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 266 274 CUL2 Cullin-2 yes no 2 0.020986 38.776 By matching By MS/MS 1 1 1.1159 1.0602 25.058 2 Median 0.87162 0.88802 NaN 1 0 Median 1.4286 1.2657 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2424800 991240 1433500 575510 271430 304080 1849300 719810 1129500 0 0 0 0 0 0 0 0 0 0 0 0 39289 196 41257 208347;208348 211804 211804 1 YLHVGYIVPPAPEK RFSDFLGLHSKLASKYLHVGYIVPPAPEKS KYLHVGYIVPPAPEKSIVGMTKVKVGKEDS K Y L E K S 1 0 0 0 0 0 1 1 1 1 1 1 0 0 3 0 0 0 2 2 0 0 14 0 1581.8555 O60749;D6RC15 O60749 198 211 SNX2 Sorting nexin-2 yes no 3 0.00023111 58.098 By MS/MS By matching By MS/MS 1 1 1 0.76165 0.71339 10.312 3 Plateau 0.76165 0.71339 NaN 1 0 Median 0.75737 0.64939 NaN 1 0 Median 0.75994 0.79791 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24044000 13763000 10281000 15029000 8881600 6147500 3561800 1574700 1987100 5453100 3306400 2146700 0 0 0 0 0 0 0 0 0 39290 1629 41258 208349;208350;208351 211805;211806;211807;211808 211805 4 YLIANATNPESK ELRSICTTVLELLDKYLIANATNPESKVFY LDKYLIANATNPESKVFYLKMKGDYFRYLA K Y L S K V 2 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 12 0 1319.6721 P27348;E9PG15 P27348 104 115 YWHAQ 14-3-3 protein theta yes no 2 6.3249E-06 150.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 1 0.97557 0.84909 16.779 7 Median 0.74481 0.69201 32.024 2 1 Median 0.98672 0.82489 1.6038 2 2 Median 0.94836 0.88897 NaN 1 0 Median 1.0561 0.87285 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0098 0.84909 NaN 1 0 Median 107690000 53604000 54085000 63590000 32318000 31272000 24928000 12194000 12734000 15742000 7429000 8312600 1247100 610140 636950 0 0 0 2182200 1051900 1130300 39291 2152 41259 208352;208353;208354;208355;208356;208357;208358 211809;211810;211811;211812;211813;211814;211815;211816;211817;211818;211819;211820 211816 12 YLIATSEQPIAALHR GKGSEKSDDNSYDEKYLIATSEQPIAALHR YLIATSEQPIAALHRDEWLRPEDLPIKYAG K Y L H R D 3 1 0 0 0 1 1 0 1 2 2 0 0 0 1 1 1 0 1 0 0 0 15 0 1681.9152 Q5T5C7;P49591 Q5T5C7 267 281 SARS Serine--tRNA ligase, cytoplasmic yes no 2;3 2.9825E-07 95.651 By MS/MS By matching By MS/MS By MS/MS By matching 4 1 2 4 1 0.98698 0.85648 26.149 12 Median 0.89702 0.84282 44.436 4 0 Median 0.9756 0.87012 NaN 1 0 Median 1.0402 1.0456 3.1079 2 0 Median 0.97962 0.83574 10.39 4 0 Median 0.76153 0.78243 NaN 1 0 Median NaN NaN NaN 0 0 Median 76140000 38585000 37555000 36332000 19888000 16444000 181680 94157 87524 26587000 12089000 14498000 11869000 5785300 6083400 1170400 727970 442380 0 0 0 39292 2387 41260 208359;208360;208361;208362;208363;208364;208365;208366;208367;208368;208369;208370 211821;211822;211823;211824;211825;211826;211827;211828;211829;211830 211824 9 YLIEFELKESDNPR CIMQEDESYLLQVLRYLIEFELKESDNPRR RYLIEFELKESDNPRRLLRRGTCAFSILFK R Y L P R R 0 1 1 1 0 0 3 0 0 1 2 1 0 1 1 1 0 0 1 0 0 0 14 1 1751.873 Q14C86;F8W9S7;C9IZ08;B0QZ65;B4DGD8;H0Y7I9;A0A0A0MQV8 Q14C86 155 168 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 yes no 3 0.030307 20.106 By MS/MS 1 0.91281 1.0403 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91281 1.0403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18167000 9194500 8972300 0 0 0 0 0 0 18167000 9194500 8972300 0 0 0 0 0 0 0 0 0 39293 2907 41261 208371 211831 211831 1 YLIEIAK HKLSVEAPPKILVERYLIEIAKNYNVPYEP PPKILVERYLIEIAKNYNVPYEPDSVVMAE R Y L A K N 1 0 0 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 7 0 848.50076 P53990;H3BMU1;H3BUI0;J3KR23 P53990 165 171 IST1 IST1 homolog yes no 2 0.014908 73.039 By matching By matching By MS/MS By MS/MS By matching 1 1 2 3 1 1.2339 1.0764 15.355 8 Median 0.93512 0.90017 NaN 1 0 Median 1.5924 1.3973 NaN 1 0 Median 0.94802 0.94686 2.6775 2 1 Median 1.4224 1.1886 8.6534 3 1 Median NaN NaN NaN 0 0 Median 1.2997 1.1002 NaN 1 0 Median 40588000 20741000 19846000 2476500 1266200 1210300 323280 136770 186510 25590000 13905000 11684000 12005000 5351600 6653100 0 0 0 193750 81505 112250 39294 2477 41262 208372;208373;208374;208375;208376;208377;208378;208379 211832;211833;211834 211833 3 YLIGELVSSK WENIATILEAKCALKYLIGELVSSKIQVSK KCALKYLIGELVSSKIQVSKLESSLKQSKT K Y L S K I 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 1 1 0 0 10 0 1107.6176 O95239;Q2VIQ3 O95239 869 878 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.006956 48.423 By MS/MS By matching By matching 1 2 1 1.2481 1.2263 17.415 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.11 1.1858 NaN 1 0 Median 1.23 1.0746 23.411 2 0 Median NaN NaN NaN 0 0 Median 1.586 1.355 NaN 1 0 Median 13917000 6654500 7263000 0 0 0 0 0 0 11403000 5515400 5887600 2214200 1016300 1197900 0 0 0 300310 122780 177530 39295 1757 41263 208380;208381;208382;208383 211835;211836 211836 2 YLILDEAQNIK LVLQDHQAFRRKNWRYLILDEAQNIKNFKS KNWRYLILDEAQNIKNFKSQRWQSLLNFNS R Y L I K N 1 0 1 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1318.7133 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4;A0A087X0E3 Q6ZRS2 742 752 SRCAP Helicase SRCAP yes no 2 0.00034824 110.41 By matching By MS/MS By MS/MS By matching By matching 1 3 2 1 1 1.1338 1.0609 34.626 8 Median NaN NaN NaN 0 0 Median 1.0086 0.89157 NaN 1 0 Median 0.98808 1.0545 50.246 3 2 Median 1.4858 1.3595 34.212 2 0 Median 1.2885 1.3582 NaN 1 0 Median 1.1198 0.96766 NaN 1 0 Median 46475000 23549000 22925000 0 0 0 1066400 448390 617990 41406000 21313000 20093000 808510 353980 454530 2899900 1318700 1581300 293750 115080 178670 39296 3199 41264 208384;208385;208386;208387;208388;208389;208390;208391 211837;211838;211839;211840 211838 4 YLILKDPNK LRCVIDICMKLEEGKYLILKDPNKQVIRVY KLEEGKYLILKDPNKQVIRVYSLPDGTFSS K Y L N K Q 0 0 1 1 0 0 0 0 0 1 2 2 0 0 1 0 0 0 1 0 0 0 9 1 1102.6386 O15371;A0A0D9SGB5 O15371 506 514 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 2 0.0023439 120.46 By MS/MS By MS/MS 1 1 1.0716 1.0042 8.5188 2 Median 1.006 0.94545 NaN 1 0 Median 1.1415 1.0665 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17783000 8626300 9157000 9582500 4742800 4839700 8200900 3883600 4317300 0 0 0 0 0 0 0 0 0 0 0 0 39297 1540 41265 208392;208393 211841;211842;211843;211844 211841 4 YLINGVNANNTR EITVTRQVVIGGRNKYLINGVNANNTRVQD RNKYLINGVNANNTRVQDLFCSVGLNVNNP K Y L T R V 1 1 4 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 12 0 1347.6895 O95347 O95347 115 126 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 3.6978E-06 107.24 By MS/MS By MS/MS By MS/MS 1 1 1 0.70882 0.68541 16.878 3 Median 0.70882 0.68541 NaN 1 1 Median 0.60955 0.51459 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.81713 0.69303 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16915000 9659400 7255400 4413100 2541300 1871900 4977200 2956200 2021000 0 0 0 7524500 4161900 3362600 0 0 0 0 0 0 39298 1766 41266 208394;208395;208396 211845;211846;211847;211848 211848 4 YLIPNATQPESK ELQDICNDVLELLDKYLIPNATQPESKVFY LDKYLIPNATQPESKVFYLKMKGDYFRYLS K Y L S K V 1 0 1 0 0 1 1 0 0 1 1 1 0 0 2 1 1 0 1 0 0 0 12 0 1359.7034 P31946 P31946 106 117 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 4.5512E-06 114.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 0.85596 0.78792 91.443 5 Median 0.84587 0.79314 0.93361 2 0 Median NaN NaN NaN 0 0 Median 0.78501 0.73639 NaN 1 0 Median 0.8988 0.74516 NaN 1 0 Median NaN NaN NaN 0 0 Median 7.209 5.9141 NaN 1 1 Median 264440000 110320000 154120000 140650000 74786000 65861000 0 0 0 45008000 24280000 20729000 6051900 3150200 2901700 0 0 0 72728000 8100700 64628000 39299 2210 41267 208397;208398;208399;208400;208401 211849;211850;211851;211852;211853;211854 211852 6 YLIVDEGHR IAMRDRNALQHCYWKYLIVDEGHRIKNMKC QHCYWKYLIVDEGHRIKNMKCRLIRELKRF K Y L H R I 0 1 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1100.5615 F6XU50;A0A0B4J1V9;Q9NRZ9;A0A087WSW7 F6XU50 226 234 HELLS Lymphoid-specific helicase yes no 2 0.0038329 62.546 By MS/MS 1 0.92841 0.79987 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92841 0.79987 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1623600 745750 877890 0 0 0 0 0 0 0 0 0 1623600 745750 877890 0 0 0 0 0 0 39300 211 41268 208402 211855 211855 1 YLKDVTLQK TAQAIKGMHIRKATKYLKDVTLQKQCVPFR IRKATKYLKDVTLQKQCVPFRRYNGGVGRC K Y L Q K Q 0 0 0 1 0 1 0 0 0 0 2 2 0 0 0 0 1 0 1 1 0 0 9 1 1106.6336 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3QLC8;A0A0A0MRF8;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81;J3KSJ0 A0A087WXM6 47 55 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 0.0022256 123.21 By MS/MS By MS/MS By MS/MS By matching By MS/MS 1 2 1 2 2 1.3674 1.1689 9.9222 8 Median 1.1301 1.1478 NaN 1 0 Median 1.2972 1.1547 4.3001 2 1 Median 1.4065 1.4024 NaN 1 0 Median 1.4785 1.2848 6.6369 2 0 Median 1.2353 1.0853 6.3537 2 0 Median NaN NaN NaN 0 0 Median 83660000 38536000 45123000 19084000 8867400 10217000 8027600 3396100 4631500 7350300 2960300 4389900 3268600 1408300 1860300 45929000 21904000 24025000 0 0 0 39301 67 41269 208403;208404;208405;208406;208407;208408;208409;208410 211856;211857;211858;211859;211860;211861;211862;211863;211864 211863 9 YLKGDHAGVLK EFCDYNKVAIKVGGRYLKGDHAGVLKASAE VGGRYLKGDHAGVLKASAETVDPASLWEY_ R Y L L K A 1 0 0 1 0 0 0 2 1 0 2 2 0 0 0 0 0 0 1 1 0 0 11 1 1199.6663 Q16658 Q16658 469 479 FSCN1 Fascin yes yes 2;3 6.2014E-05 95.477 By MS/MS By MS/MS By matching By matching By matching 10 3 3 1 1 1.1626 1.1105 23.686 18 Median 1.0765 1.0274 11.782 10 0 Median 1.2725 1.1924 23.303 3 0 Plateau 1.2069 1.2769 11.823 3 0 Median 1.3436 1.343 NaN 1 0 Median 2.0668 2.2077 NaN 1 0 Median NaN NaN NaN 0 0 Median 31759000 14351000 17408000 15375000 7139200 8235500 13473000 6096200 7376700 1787100 820470 966640 222760 93183 129580 901310 201580 699730 0 0 0 39302 2993 41270 208411;208412;208413;208414;208415;208416;208417;208418;208419;208420;208421;208422;208423;208424;208425;208426;208427;208428 211865;211866;211867;211868;211869;211870;211871 211871 7 YLLAMER RAIRNCPWTVALWSRYLLAMERHGVDHQVI WTVALWSRYLLAMERHGVDHQVISVTFEKA R Y L E R H 1 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 7 0 894.46332 A0A499FI31;Q15020 A0A499FI31 403 409 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.018227 81.297 By MS/MS By matching By MS/MS 1 1 1 1.2999 1.4182 161.44 3 Median 1.6138 1.5605 NaN 1 1 Median 0.096872 0.090918 NaN 1 0 Median 1.2999 1.4182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7609000 3550500 4058500 4512300 1660800 2851400 1182300 1071400 110940 1914500 818320 1096100 0 0 0 0 0 0 0 0 0 39303 473 41271 208429;208430;208431 211872;211873 211872 2 YLLDYLHGEVQIPTDEQTR ESGACVIDRDGRLFKYLLDYLHGEVQIPTD YLHGEVQIPTDEQTRIALQEEADYFGIPYP K Y L T R I 0 1 0 2 0 2 2 1 1 1 3 0 0 0 1 0 2 0 2 1 0 0 19 0 2289.1277 Q6PI47 Q6PI47 67 85 KCTD18 BTB/POZ domain-containing protein KCTD18 yes yes 3 3.0442E-08 65.107 By MS/MS By MS/MS 1 1 1.5353 1.4197 76.415 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83461 0.82704 NaN 1 0 Median 2.8241 2.437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15833000 7675700 8156900 0 0 0 0 0 0 8103400 4633500 3470000 7729300 3042300 4687000 0 0 0 0 0 0 39304 3170 41272 208432;208433 211874;211875;211876;211877 211874 4 YLLEQDFPGMR LLVGQYSTGKTTFIRYLLEQDFPGMRIGPE TFIRYLLEQDFPGMRIGPEPTTDSFIAVMY R Y L M R I 0 1 0 1 0 1 1 1 0 0 2 0 1 1 1 0 0 0 1 0 0 0 11 0 1367.6544 Q9H223 Q9H223 80 90 EHD4 EH domain-containing protein 4 no no 2 0.00015996 103.56 By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 0.95314 0.84426 4.7612 5 Median 0.9059 0.85873 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84126 0.84064 NaN 1 1 Median 0.95314 0.79671 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0707 0.87637 5.2784 2 0 Median 28328000 14348000 13980000 13890000 7124500 6766000 0 0 0 12275000 6142900 6131900 1159700 565050 594630 0 0 0 1003200 515800 487380 39305 3939 41273 208434;208435;208436;208437;208438 211878;211879;211880;211881;211882 211878 5 YLLGDAPVSPSSQK LKDRYLKHLRGQEHKYLLGDAPVSPSSQKL KYLLGDAPVSPSSQKLKRKAEEDPEAADSG K Y L Q K L 1 0 0 1 0 1 0 1 0 0 2 1 0 0 2 3 0 0 1 1 0 0 14 0 1460.7511 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 195 208 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes no 2 8.1537E-06 91.937 By MS/MS 1 0.66713 0.66563 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66713 0.66563 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5833000 3637600 2195400 0 0 0 0 0 0 5833000 3637600 2195400 0 0 0 0 0 0 0 0 0 39306 4174 41274 208439 211883;211884 211883 2 YLLGDMEGR STIVCHNRVDPNGSRYLLGDMEGRLFMLLL DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT R Y L G R L 0 1 0 1 0 0 1 2 0 0 2 0 1 0 0 0 0 0 1 0 0 0 9 0 1052.4961 Q16531;F5GY55 Q16531 271 279 DDB1 DNA damage-binding protein 1 yes no 2 0.00052767 117.4 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 4 4 4 1 2 1.0727 0.99909 21.182 18 Median 1.0282 1.0028 2.8974 3 0 Median 1.0727 0.87718 10.717 4 0 Median 0.75233 0.80846 8.5365 4 1 Median 1.5489 1.3083 9.075 4 1 Median 1.1733 1.2268 NaN 1 0 Median 1.4312 1.1891 25.155 2 0 Median 130330000 65090000 65242000 31727000 14985000 16742000 33990000 15966000 18024000 53389000 29842000 23547000 9027000 3376600 5650400 1704500 738150 966330 494750 181830 312930 39307 2985 41275;41276 208440;208441;208442;208443;208444;208445;208446;208447;208448;208449;208450;208451;208452;208453;208454;208455;208456;208457 211885;211886;211887;211888;211889;211890;211891;211892;211893;211894;211895;211896;211897;211898;211899;211900;211901;211902;211903;211904;211905 211886 1640 21 YLLGTSLAR FIWPAIQSSALYEDRYLLGTSLARPCIARK ALYEDRYLLGTSLARPCIARKQVEIAQREG R Y L A R P 1 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 9 0 992.56548 P00966;Q5T6L5;Q5T6L6 P00966 87 95 ASS1 Argininosuccinate synthase yes no 2 0.00045508 96.253 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1.1553 1.0562 16.445 4 Median 0.99232 0.95151 NaN 1 1 Median 1.3768 1.2006 NaN 1 0 Median 0.8514 0.85501 NaN 1 0 Median 1.3451 1.1724 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28844000 12699000 16145000 9953500 4697100 5256400 14126000 5662800 8463600 3623200 1894900 1728300 1140500 443730 696740 0 0 0 0 0 0 39308 1828 41277 208458;208459;208460;208461 211906;211907;211908 211906 3 YLLLHLLGR EDNSQFKDHPTLNDRYLLLHLLGRGGFSEV PTLNDRYLLLHLLGRGGFSEVYKAFDLTEQ R Y L G R G 0 1 0 0 0 0 0 1 1 0 5 0 0 0 0 0 0 0 1 0 0 0 9 0 1096.6757 Q86UE8;J3KRK0;J3QLK5;Q9UKI8 Q86UE8 462 470 TLK2;TLK1 Serine/threonine-protein kinase tousled-like 2;Serine/threonine-protein kinase tousled-like 1 yes no 2 0.031814 35.88 By matching By MS/MS By matching 1 2 2 1.3721 1.1617 24.287 5 Median NaN NaN NaN 0 0 Median 1.0969 0.97919 NaN 1 0 Median 1.3344 1.3816 39.045 2 0 Median 1.4198 1.2168 6.5443 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9326900 3805100 5521800 0 0 0 1099300 538970 560290 3172100 1289300 1882800 5055600 1976800 3078800 0 0 0 0 0 0 39309 3277 41278 208462;208463;208464;208465;208466 211909 211909 1 YLLLNPK STWEKELHKIVFDPRYLLLNPKERKQVFDQ HKIVFDPRYLLLNPKERKQVFDQYVKTRAE R Y L P K E 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 7 0 859.51674 O14776;G3V220 O14776 694 700 TCERG1 Transcription elongation regulator 1 yes no 2 0.0017395 109.88 By matching By matching By MS/MS By MS/MS By MS/MS 2 2 2 1 1 1.0158 0.98353 19.024 8 Median 1.4047 1.3462 1.9032 2 0 Median 0.99469 0.86685 13.866 2 0 Median 0.95026 0.96085 7.2933 2 0 Median 1.2108 1.0433 NaN 1 0 Median 0.86553 0.90652 NaN 1 0 Median NaN NaN NaN 0 0 Median 49828000 25091000 24737000 5544100 2317700 3226300 3156200 1523000 1633100 19134000 9214000 9920300 4182100 1900000 2282100 17812000 10137000 7675200 0 0 0 39310 1494 41279 208467;208468;208469;208470;208471;208472;208473;208474 211910;211911;211912;211913;211914 211911 5 YLLMSIDQR EEHLEKHRKDKAHKRYLLMSIDQRKKMLKN DKAHKRYLLMSIDQRKKMLKNLRNTNYDVF R Y L Q R K 0 1 0 1 0 1 0 0 0 1 2 0 1 0 0 1 0 0 1 0 0 0 9 0 1137.5852 P82914 P82914 155 163 MRPS15 28S ribosomal protein S15, mitochondrial yes yes 2 0.00067245 105.57 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.053 0.99237 21.328 4 Median 1.1335 1.0765 NaN 1 0 Median 1.3146 1.1138 NaN 1 0 Median 0.97828 0.91481 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71232 0.69792 NaN 1 0 Median 23343000 10345000 12999000 19202000 8733600 10468000 2841400 1107700 1733700 1222900 457390 765470 0 0 0 0 0 0 77106 45762 31344 39311 2656 41280 208475;208476;208477;208478 211915;211916;211917;211918 211915 4 YLLQEQLK LGREVEEKIKQTHRKYLLQEQLKIIKKELG IKQTHRKYLLQEQLKIIKKELGLEKDDKDA K Y L L K I 0 0 0 0 0 2 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 8 0 1033.5808 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 280 287 LONP1 Lon protease homolog, mitochondrial yes no 2 0.007026 68.787 By MS/MS By matching 1 1 1.3058 1.2543 1.9761 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1566 1.272 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4743 1.2369 NaN 1 0 Median 6459200 3115400 3343700 0 0 0 0 0 0 6154100 2995100 3159100 0 0 0 0 0 0 305020 120380 184640 39312 1370 41281 208479;208480 211919 211919 1 YLLQETWLEK ISGLHASINVHLSARYLLQETWLEKKWGHN HLSARYLLQETWLEKKWGHNITEFQQRFDG R Y L E K K 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 1 1 1 0 0 0 10 0 1321.6918 Q96HE7 Q96HE7 266 275 ERO1L ERO1-like protein alpha yes yes 2 0.0011397 87.308 By MS/MS 2 1.2691 1.0753 0.86761 2 Median NaN NaN NaN 0 0 Median 1.2691 1.0753 0.86761 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25693000 11165000 14528000 0 0 0 25693000 11165000 14528000 0 0 0 0 0 0 0 0 0 0 0 0 39313 3666 41282 208481;208482 211920;211921 211920 2 YLLSQSSPAPLTAAEEELR FGTVKEDVSLHGYKKYLLSQSSPAPLTAAE QSSPAPLTAAEEELRQIKINEVQTDVGVDT K Y L L R Q 3 1 0 0 0 1 3 0 0 0 4 0 0 0 2 3 1 0 1 0 0 0 19 0 2074.0582 Q12792;F8VS81 Q12792 137 155 TWF1 Twinfilin-1 yes no 2 1.9636E-06 61.375 By MS/MS 1 0.69232 0.70189 NaN 1 Median 0.69232 0.70189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2390400 1271600 1118800 2390400 1271600 1118800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39314 2759 41283 208483 211922 211922 1 YLLTMDK DPVKLFTKLFKDDIRYLLTMDKLWRKRKPP KLFKDDIRYLLTMDKLWRKRKPPVPLDWAE R Y L D K L 0 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 0 0 7 0 882.45209 Q9UBT2;K7EPL2 Q9UBT2 265 271 UBA2 SUMO-activating enzyme subunit 2 yes no 2 0.0113 80.462 By MS/MS By MS/MS By matching 2 3 1 1.3081 1.1412 12.488 6 Median 1.0387 0.98407 9.2018 2 0 Median 1.385 1.2053 7.2275 3 0 Median NaN NaN NaN 0 0 Median 1.3929 1.2868 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17454000 8011600 9442200 10857000 5146400 5710500 6380100 2766700 3613400 0 0 0 216780 98500 118280 0 0 0 0 0 0 39315 4247 41284 208484;208485;208486;208487;208488;208489 211923;211924;211925;211926 211924 4 YLLTPSMQK SYQRNDLQLRSTPFRYLLTPSMQKSVQNKI RSTPFRYLLTPSMQKSVQNKIKSLNWEEME R Y L Q K S 0 0 0 0 0 1 0 0 0 0 2 1 1 0 1 1 1 0 1 0 0 0 9 0 1079.5685 V9GZ55;K7ENR6;Q969U7 V9GZ55 149 157 PSMG2 Proteasome assembly chaperone 2 yes no 2 0.0045081 63.48 By MS/MS By MS/MS 1 2 0.24314 0.20334 115.29 3 Median 1.335 1.2305 NaN 1 0 Median 0.2089 0.17091 24.567 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43184000 30014000 13170000 12143000 4880200 7263300 31041000 25134000 5906600 0 0 0 0 0 0 0 0 0 0 0 0 39316 1388 41285 208490;208491;208492 211927;211928 211927 2 YLLTQELLQGGEVHR TRHHGTMSDVLRAERYLLTQELLQGGEVHR YLLTQELLQGGEVHRGVLDQLYTSQAEATL R Y L H R G 0 1 0 0 0 2 2 2 1 0 4 0 0 0 0 0 1 0 1 1 0 0 15 0 1754.9315 Q92508 Q92508 1548 1562 PIEZO1 Piezo-type mechanosensitive ion channel component 1 yes yes 3 9.5934E-05 64.394 By MS/MS By matching 1 1 1.7057 1.5575 16.862 2 Median 1.3966 1.3824 NaN 1 0 Median 2.0833 1.7547 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9506800 3792300 5714500 7503600 3154400 4349200 2003200 637890 1365300 0 0 0 0 0 0 0 0 0 0 0 0 39317 3529 41286 208493;208494 211929;211930 211929 2 YLLYWKDPEYAK QRGYFKDKAFVNYLKYLLYWKDPEYAKYLK YLKYLLYWKDPEYAKYLKYPQCLHMLELLQ K Y L A K Y 1 0 0 1 0 0 1 0 0 0 2 2 0 0 1 0 0 1 3 0 0 0 12 1 1587.7973 Q9Y3C7 Q9Y3C7 54 65 MED31 Mediator of RNA polymerase II transcription subunit 31 yes yes 3 0.0034925 36.847 By MS/MS 1 0.97334 0.99199 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.97334 0.99199 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4037400 2119400 1918000 0 0 0 0 0 0 4037400 2119400 1918000 0 0 0 0 0 0 0 0 0 39318 4419 41287 208495 211931 211931 1 YLMEEDEDAYKK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM R Y L K K Q 1 0 0 2 0 0 3 0 0 0 1 2 1 0 0 0 0 0 2 0 0 0 12 1 1532.6705 A0A2R8Y6J3;P46777 A0A2R8Y6J3 160 171 RPL5 60S ribosomal protein L5 yes no 2;3 1.2855E-06 125.57 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 12 11 5 6 2 3 1.1151 1.0754 15.295 39 Median 1.0243 1.0197 19.318 12 0 Median 1.1845 1.0944 14.67 11 0 Median 1.0631 1.1048 16.375 5 0 Median 1.1983 1.0578 12.588 6 0 Median 0.92537 0.9761 5.8696 2 0 Median 1.3535 1.1747 9.0769 3 0 Median 832990000 383080000 449910000 336950000 158490000 178450000 310240000 138650000 171590000 86620000 41335000 45285000 70988000 31934000 39054000 11454000 5112000 6342200 16743000 7557800 9185000 39319 375 41288;41289 208496;208497;208498;208499;208500;208501;208502;208503;208504;208505;208506;208507;208508;208509;208510;208511;208512;208513;208514;208515;208516;208517;208518;208519;208520;208521;208522;208523;208524;208525;208526;208527;208528;208529;208530;208531;208532;208533;208534 211932;211933;211934;211935;211936;211937;211938;211939;211940;211941;211942;211943;211944;211945;211946;211947;211948;211949;211950;211951;211952;211953;211954;211955;211956;211957;211958;211959;211960;211961;211962;211963;211964;211965;211966;211967;211968;211969;211970;211971;211972;211973;211974;211975;211976;211977 211939 178 46 YLNEAAGVAAEEAR VFVDLKWFESKVGNKYLNEAAGVAAEEARN KYLNEAAGVAAEEARNYKEKKKLKGQENSL K Y L A R N 5 1 1 0 0 0 3 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 14 0 1462.7052 Q8IZH2 Q8IZH2 369 382 XRN1 5-3 exoribonuclease 1 yes yes 2 1.3946E-05 87.363 By MS/MS By MS/MS 1 1 1.2903 1.1502 15.095 2 Median 1.1014 1.0337 NaN 1 0 Median 1.5117 1.2797 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17036000 7090200 9945400 14258000 5989800 8268400 2777400 1100400 1677000 0 0 0 0 0 0 0 0 0 0 0 0 39320 3350 41290 208535;208536 211978;211979 211978 2 YLNEQLYSGPSSAAQR LRARMAQRLDGARFRYLNEQLYSGPSSAAQ LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG R Y L Q R L 2 1 1 0 0 2 1 1 0 0 2 0 0 0 1 3 0 0 2 0 0 0 16 0 1782.8537 E9PPY3;O43159 E9PPY3 253 268 RRP8 Ribosomal RNA-processing protein 8 yes no 2 1.0566E-08 138.45 By MS/MS By MS/MS By matching 2 4 2 0.90515 0.90564 28.155 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1653 1.2347 43.659 2 0 Median NaN NaN NaN 0 0 Median 0.90479 0.91058 2.9122 4 0 Median 0.83782 0.71416 24.676 2 0 Median 52019000 26416000 25603000 0 0 0 0 0 0 11621000 5460900 6160000 0 0 0 38030000 19644000 18386000 2367600 1310600 1057000 39321 979 41291 208537;208538;208539;208540;208541;208542;208543;208544 211980;211981;211982;211983;211984;211985;211986 211984 7 YLNFFTK TIEMNEPVQLTFALRYLNFFTKATPLSSTV VQLTFALRYLNFFTKATPLSSTVTLSMSAD R Y L T K A 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 1 0 0 0 7 0 931.48035 P12004 P12004 211 217 PCNA Proliferating cell nuclear antigen yes yes 2 0.010865 81.297 By MS/MS By matching By MS/MS By matching By MS/MS 4 3 3 2 2 1.1417 1.1027 8.6021 14 Median 1.1417 1.0635 14.17 4 0 Median 1.3498 1.1459 4.2924 3 0 Median 1.0926 1.0767 7.518 3 0 Plateau 1.2691 1.0576 7.4516 2 0 Median 1.0796 1.0901 4.7446 2 0 Median NaN NaN NaN 0 0 Median 259170000 118110000 141060000 164910000 73467000 91443000 2322900 958880 1364000 44014000 20540000 23475000 10709000 4588200 6120800 37214000 18559000 18655000 0 0 0 39322 1974 41292 208545;208546;208547;208548;208549;208550;208551;208552;208553;208554;208555;208556;208557;208558 211987;211988;211989;211990;211991;211992;211993;211994;211995 211990 9 YLNIFGESQPNPK KNGEFFMSPNDFVTRYLNIFGESQPNPKTV TRYLNIFGESQPNPKTVELLSGVVDQTKDG R Y L P K T 0 0 2 0 0 1 1 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 13 0 1505.7514 Q9UJS0;R4GN64 Q9UJS0 44 56 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes no 2 0.00037094 75.294 By MS/MS 1 0.66534 0.62116 NaN 1 Median 0.66534 0.62116 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22034000 13612000 8422600 22034000 13612000 8422600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39323 4297 41293 208559 211996;211997 211997 2 YLNQDYEALR REAAEGLGSHDRAIKYLNQDYEALRNECLE DRAIKYLNQDYEALRNECLEAGTLFQDPSF K Y L L R N 1 1 1 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 10 0 1283.6146 P17655 P17655 27 36 CAPN2 Calpain-2 catalytic subunit yes yes 2 0.0016465 81.594 By MS/MS By MS/MS 1 1 1.0101 0.91919 2.4893 2 Median 0.97851 0.93552 NaN 1 1 Median 1.0426 0.90316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9679300 4733300 4946000 5314400 2668400 2646000 4364900 2064800 2300000 0 0 0 0 0 0 0 0 0 0 0 0 39324 2045 41294 208560;208561 211998;211999 211998 2 YLNSGGFIGYAPYVNR KRLADKYPVVHIGKRYLNSGGFIGYAPYVN LNSGGFIGYAPYVNRIVQQWNLQDNDDDQL R Y L N R I 1 1 2 0 0 0 0 3 0 1 1 0 0 1 1 1 0 0 3 1 0 0 16 0 1789.8788 O00469;E7ETU9;C9JXZ0 O00469 163 178 PLOD2 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 yes no 2 0.00013101 62.303 By MS/MS 1 0.90037 0.88262 NaN 1 Median 0.90037 0.88262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2598300 1318900 1279400 2598300 1318900 1279400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39325 890 41295 208562 212000;212001 212001 2 YLNTNPVGGLLEYAR SMMPNKVRKIGELVRYLNTNPVGGLLEYAR YLNTNPVGGLLEYARSHGFAAEFKLVDQSG R Y L A R S 1 1 2 0 0 0 1 2 0 0 3 0 0 0 1 0 1 0 2 1 0 0 15 0 1678.8679 P55265;A0A3B3IRQ9;A0A3B3ISX1 P55265 722 736 ADAR Double-stranded RNA-specific adenosine deaminase yes no 2 3.3282E-10 121.02 By matching By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 2 5 2 4 4 1.0761 1.0412 35.825 17 Median 1.5539 1.5247 NaN 1 0 Median 1.1924 1.0618 2.7628 2 0 Median 1.0122 1.0368 15.554 4 0 Median 1.1598 0.98952 10.477 2 0 Median 0.90741 0.91941 54.652 4 0 Median 1.6227 1.3556 41.047 4 0 Linear 86756000 44788000 41967000 2498500 899350 1599100 1617500 807250 810240 22785000 11966000 10819000 1410400 632710 777640 56682000 29811000 26871000 1762400 672370 1090100 39326 2498 41296 208563;208564;208565;208566;208567;208568;208569;208570;208571;208572;208573;208574;208575;208576;208577;208578;208579;208580 212002;212003;212004;212005;212006;212007;212008;212009;212010;212011;212012;212013;212014;212015;212016;212017;212018 212013 16 YLNTQFIK EEYSKGADYMDCLYRYLNTQFIKKNKLTEA YMDCLYRYLNTQFIKKNKLTEADLQYGYGG R Y L I K K 0 0 1 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1025.5546 A0A0A0MTN0;Q13617;Q5T2B5 A0A0A0MTN0 120 127 CUL2 Cullin-2 yes no 2 0.031031 38.792 By MS/MS 1 1.0174 0.9386 NaN 1 Median 1.0174 0.9386 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6846500 3751100 3095400 6846500 3751100 3095400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39327 196 41297 208581 212019 212019 1 YLPALGYSK FGGIDQRKIFTFAEKYLPALGYSKRVHLMN FTFAEKYLPALGYSKRVHLMNPMVPGLTGS K Y L S K R 1 0 0 0 0 0 0 1 0 0 2 1 0 0 1 1 0 0 2 0 0 0 9 0 1010.5437 P54577;A0A0C4DGZ5 P54577 198 206 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed;Tyrosine--tRNA ligase yes no 2 0.0014585 81.296 By MS/MS By MS/MS By MS/MS By MS/MS 1 3 1 2 1.2194 1.0724 12.693 7 Median 1.1481 1.0724 NaN 1 0 Median 1.2194 1.0433 17.24 3 0 Median 1.3225 1.3252 NaN 1 1 Median 1.2221 1.061 3.091 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37642000 17595000 20047000 20641000 9615900 11025000 10323000 4975700 5347800 5259500 2410300 2849200 1417800 592590 825160 0 0 0 0 0 0 39328 2482 41298 208582;208583;208584;208585;208586;208587;208588 212020;212021;212022;212023;212024;212025;212026 212021 7 YLPDIIK YDGHGGEEVALYCAKYLPDIIKDQKAYKEG EVALYCAKYLPDIIKDQKAYKEGKLQKALE K Y L I K D 0 0 0 1 0 0 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 0 7 0 860.50076 O15355 O15355 74 80 PPM1G Protein phosphatase 1G yes yes 2 0.062015 37.094 By MS/MS By matching 1 2 1.0435 0.90642 17.974 3 Median 1.2256 1.1812 NaN 1 0 Median 1.0089 0.87169 5.525 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5932800 2813700 3119100 2568200 1160600 1407700 3364600 1653200 1711400 0 0 0 0 0 0 0 0 0 0 0 0 39329 1538 41299 208589;208590;208591 212027 212027 1 YLPDIIKDQK YDGHGGEEVALYCAKYLPDIIKDQKAYKEG LYCAKYLPDIIKDQKAYKEGKLQKALEDAF K Y L Q K A 0 0 0 2 0 1 0 0 0 2 1 2 0 0 1 0 0 0 1 0 0 0 10 1 1231.6812 O15355 O15355 74 83 PPM1G Protein phosphatase 1G yes yes 2;3 0.0022587 111.74 By MS/MS By matching 3 1 1.0414 0.97729 17.509 4 Median 1.0979 1.0181 9.3497 3 0 Plateau 1.4089 1.2881 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28154000 12802000 15352000 27539000 12547000 14992000 614940 254650 360290 0 0 0 0 0 0 0 0 0 0 0 0 39330 1538 41300 208592;208593;208594;208595 212028;212029;212030 212030 3 YLPELMAEK PPSATASVKMEPENKYLPELMAEKDSLDPS MEPENKYLPELMAEKDSLDPSFTHAMQLLT K Y L E K D 1 0 0 0 0 0 2 0 0 0 2 1 1 0 1 0 0 0 1 0 0 0 9 0 1092.5525 Q07666;Q5VWX1;O75525 Q07666 103 111 KHDRBS1;KHDRBS2;KHDRBS3 KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2;KH domain-containing, RNA-binding, signal transduction-associated protein 3 no no 2 0.0032576 66.351 By matching By MS/MS By MS/MS By MS/MS By matching 1 3 5 1 2 1.1461 1.0109 24.756 12 Median NaN NaN NaN 0 0 Median 1.5351 1.3281 NaN 1 0 Median 0.82494 0.79644 32.048 3 1 Median 1.2651 1.0864 15.808 5 1 Median 0.85462 0.81354 NaN 1 0 Median 0.96756 0.83179 38.479 2 0 Median 283510000 156820000 126690000 0 0 0 1194200 527260 666930 228450000 130780000 97672000 43341000 20348000 22994000 5570400 2970400 2600000 4949600 2192500 2757100 39331 2731;1680 41301;41302 208596;208597;208598;208599;208600;208601;208602;208603;208604;208605;208606;208607 212031;212032;212033;212034;212035;212036;212037;212038;212039;212040 212037 539 10 YLPENDLKR PLDLDKYVEIARLCKYLPENDLKRLCDYVC IARLCKYLPENDLKRLCDYVCDLLLEESNV K Y L K R L 0 1 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 1 1146.6033 O00743 O00743 18 26 PPP6C Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed yes yes 2 0.048326 35.295 By MS/MS 1 1.1776 1.0653 NaN 1 Median NaN NaN NaN 0 0 Median 1.1776 1.0653 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2609400 1075600 1533800 0 0 0 2609400 1075600 1533800 0 0 0 0 0 0 0 0 0 0 0 0 39332 1476 41303 208608 212041;212042 212042 2 YLPHSAGR ISLQDYIAVKEKYAKYLPHSAGRYAAKRFR VKEKYAKYLPHSAGRYAAKRFRKAQCPIVE K Y L G R Y 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 899.46135 M0R0F0;M0R0R2;P46782 M0R0F0 48 55 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes no 2 0.0035293 90.661 By MS/MS By matching By matching By matching By matching By matching 2 2 1 1 2 1 1.097 0.99861 11.662 9 Median 0.96975 0.93514 8.9629 2 0 Median 1.0177 0.85785 2.328 2 0 Median 1.1069 1.0594 NaN 1 0 Median 1.3618 1.0903 NaN 1 0 Median 1.1172 1.1373 2.2747 2 0 Median 1.2674 0.99861 NaN 1 0 Median 15434000 7854600 7579600 6587100 3585200 3001900 1854700 953520 901180 4237700 2058500 2179200 77299 32417 44882 2547700 1172900 1374900 129610 52070 77541 39333 1425 41304 208609;208610;208611;208612;208613;208614;208615;208616;208617 212043 212043 1 YLPISHPR VTARVIGGRDMKTFKYLPISHPRFVRTIPE RDMKTFKYLPISHPRFVRTIPELSVRPSEL K Y L P R F 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 0 8 0 981.5396 Q14690;A0A3B3IUD7 Q14690 1103 1110 PDCD11 Protein RRP5 homolog yes no 2 0.0057881 73.975 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.9162 0.99111 22.169 5 Median NaN NaN NaN 0 0 Median 1.642 1.4101 NaN 1 0 Median 0.90572 1.0077 2.3527 2 0 Median NaN NaN NaN 0 0 Median 0.81162 0.85256 NaN 1 0 Median 0.95565 0.79512 NaN 1 0 Median 11604000 6103100 5501000 0 0 0 752070 298300 453770 5479100 2941200 2538000 0 0 0 3057800 1743400 1314400 2315000 1120200 1194800 39334 448 41305 208618;208619;208620;208621;208622 212044;212045;212046;212047;212048 212044 5 YLPQEQR GLIGTALNCVLQVPKYLPQEQRFDIRVLGL NCVLQVPKYLPQEQRFDIRVLGLGLLINLV K Y L Q R F 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 932.47158 Q7Z5K2;Q8WVX6;F6QZY1 Q7Z5K2 971 977 WAPAL Wings apart-like protein homolog yes no 2 0.050156 40.103 By MS/MS 1 0.8003 0.86335 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8003 0.86335 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1044700 592350 452380 0 0 0 0 0 0 1044700 592350 452380 0 0 0 0 0 0 0 0 0 39335 3249 41306 208623 212049 212049 1 YLPTIVNDVK SMSDQTVRVKGAALKYLPTIVNDVKLVFDP GAALKYLPTIVNDVKLVFDPKELSKMFTEF K Y L V K L 0 0 1 1 0 0 0 0 0 1 1 1 0 0 1 0 1 0 1 2 0 0 10 0 1160.6441 A0A096LNH6;Q14185 A0A096LNH6 821 830 DOCK1 Dedicator of cytokinesis protein 1 yes no 2 0.013194 40.352 By MS/MS By matching 1 1 0.83944 0.74654 35.941 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.057 0.96256 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.66665 0.579 NaN 1 0 Median 1347100 689930 657190 0 0 0 0 0 0 0 0 0 1181300 592110 589180 0 0 0 165840 97825 68014 39336 140 41307 208624;208625 212050 212050 1 YLQDSTFATSPHLESLLK ELELKWQHWHEECERYLQDSTFATSPHLES DSTFATSPHLESLLKIMLGDEAALLEQKEL R Y L L K I 1 0 0 1 0 1 1 0 1 0 4 1 0 1 1 3 2 0 1 0 0 0 18 0 2049.0419 Q9BW27;J3KT10;J3QL54;J3QLH0;J3QLD4;J3QLV0 Q9BW27 268 285 NUP85 Nuclear pore complex protein Nup85 yes no 2;3 1.3567E-06 69.605 By matching By MS/MS By matching By matching 1 2 2 1 1.305 1.1321 14.424 6 Median NaN NaN NaN 0 0 Median 1.3351 1.1699 NaN 1 0 Median 0.91344 0.93661 1.0318 2 0 Median 1.3799 1.183 10.856 2 0 Median NaN NaN NaN 0 0 Median 1.5792 1.2942 NaN 1 0 Median 45449000 19050000 26399000 0 0 0 873270 350020 523250 42358000 17822000 24536000 1871400 740320 1131100 0 0 0 345780 137080 208700 39337 3861 41308 208626;208627;208628;208629;208630;208631 212051;212052;212053;212054 212052 4 YLQEEVNINR CWQPIMKFINDQYEKYLQEEVNINRKKRIP DQYEKYLQEEVNINRKKRIPDTRVHCCLYF K Y L N R K 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 10 0 1276.6412 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4 Q9UHD8 390 399 SEPT9 Septin-9 yes no 2 2.6892E-15 182.69 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 5 2 1 1.3866 1.2521 33.284 16 Median 0.81199 0.77127 17.558 2 1 Median 1.8342 1.5907 24.902 2 1 Median 1.1041 1.0944 7.6787 4 1 Median 1.4547 1.2515 5.2136 5 0 Median 1.4632 1.4855 24.112 2 1 Median 3.551 3.0516 NaN 1 0 Median 514820000 230610000 284210000 18643000 10523000 8120100 7188600 2830200 4358400 292600000 138440000 154160000 178310000 71970000 106340000 12262000 5468000 6794100 5819900 1378300 4441600 39338 4276 41309 208632;208633;208634;208635;208636;208637;208638;208639;208640;208641;208642;208643;208644;208645;208646;208647 212055;212056;212057;212058;212059;212060;212061;212062;212063;212064;212065;212066;212067;212068;212069;212070;212071;212072;212073;212074;212075;212076;212077;212078;212079;212080;212081 212077 26 YLQEEVNINRK CWQPIMKFINDQYEKYLQEEVNINRKKRIP QYEKYLQEEVNINRKKRIPDTRVHCCLYFI K Y L R K K 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 1 1404.7361 Q9UHD8;K7EL40;K7EK18;K7ER52;K7EQD7;K7EIE4 Q9UHD8 390 400 SEPT9 Septin-9 yes no 2;3 3.4659E-05 155.1 By MS/MS By MS/MS 3 6 1.4403 1.277 25.9 9 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0358 1.1013 8.4913 3 0 Median 1.6735 1.538 21.28 6 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35275000 16227000 19048000 0 0 0 0 0 0 26852000 12874000 13978000 8422800 3353300 5069500 0 0 0 0 0 0 39339 4276 41310 208648;208649;208650;208651;208652;208653;208654;208655;208656 212082;212083;212084;212085;212086;212087;212088;212089 212086 8 YLQEQNRPYSSQDVFGNLQR GRAEAAAGAAGILLRYLQEQNRPYSSQDVF NRPYSSQDVFGNLQREHGLGKAVVVKTLEQ R Y L Q R E 0 2 2 1 0 4 1 1 0 0 2 0 0 1 1 2 0 0 2 1 0 0 20 1 2441.1724 Q9P2W1;K7ELD8;K7EK12;K7EQS1 Q9P2W1 19 38 PSMC3IP Homologous-pairing protein 2 homolog yes no 3 1.0178E-18 132.64 By MS/MS By MS/MS 1 1 0.94104 0.90673 7.5533 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82903 0.85957 NaN 1 0 Median 1.0682 0.95648 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19903000 10252000 9651000 0 0 0 0 0 0 16561000 8699000 7861700 3342600 1553300 1789300 0 0 0 0 0 0 39340 4230 41311 208657;208658 212090;212091;212092 212091 3 YLQGVPEGVR PGGRLGDLWDYHQHRYLQGVPEGVRDLPPG YHQHRYLQGVPEGVRDLPPGVALPLESNLA R Y L V R D 0 1 0 0 0 1 1 2 0 0 1 0 0 0 1 0 0 0 1 2 0 0 10 0 1116.5928 Q5T440 Q5T440 224 233 IBA57 Putative transferase CAF17, mitochondrial yes yes 2 0.00070879 107.57 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 2 1 1.0609 0.99188 12.027 5 Median 1.0609 0.99188 NaN 1 1 Median 1.5417 1.2956 NaN 1 0 Median 1.0116 1.0015 2.3516 2 2 Median 1.1691 0.97523 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30919000 13731000 17188000 10094000 4443400 5650500 2278500 946200 1332300 11425000 5033800 6391300 7121600 3307900 3813700 0 0 0 0 0 0 39341 3087 41312 208659;208660;208661;208662;208663 212093;212094;212095;212096;212097;212098 212097 6 YLQLAEELIRPER LDFLEEFQSSDGEIKYLQLAEELIRPERNT IKYLQLAEELIRPERNTLVVSFVDLEQFNQ K Y L E R N 1 2 0 0 0 1 3 0 0 1 3 0 0 0 1 0 0 0 1 0 0 0 13 1 1628.8886 Q14566 Q14566 46 58 MCM6 DNA replication licensing factor MCM6 yes yes 3 0.00042759 55.452 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 1 1 1 0.84254 0.86386 14.586 7 Median 0.84342 0.90018 5.8246 2 0 Median 0.84798 0.8151 31.218 2 0 Median 0.75651 0.87413 NaN 1 0 Median 0.9637 0.85394 NaN 1 0 Median 0.68802 0.74755 NaN 1 0 Median NaN NaN NaN 0 0 Median 39453000 19486000 19967000 9121100 4457900 4663200 20026000 9438500 10588000 9145700 4958600 4187100 120650 60369 60277 1039500 570730 468750 0 0 0 39342 2881 41313 208664;208665;208666;208667;208668;208669;208670 212099;212100;212101;212102;212103;212104 212104 6 YLQLQQEKEQELSK QGEDFSRTFNDHKQKYLQLQQEKEQELSKL KYLQLQQEKEQELSKLKETVYNLREENRQL K Y L S K L 0 0 0 0 0 4 3 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 1 1762.9101 O00461;F8W785 O00461 157 170 GOLIM4 Golgi integral membrane protein 4 yes no 2;3 4.9385E-07 115.18 By MS/MS 2 1.0996 1.1545 2.5476 2 Median 1.0996 1.1545 2.5476 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15895000 6929600 8965800 15895000 6929600 8965800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39343 1466 41314 208671;208672 212105;212106 212106 2 YLQLTQSELSSYHR LAAVNRQPKDANVRRYLQLTQSELSSYHRK RYLQLTQSELSSYHRKEKQLYLGMFG____ R Y L H R K 0 1 0 0 0 2 1 0 1 0 3 0 0 0 0 3 1 0 2 0 0 0 14 0 1723.8529 Q8N5M4;H0YDR3 Q8N5M4 147 160 TTC9C Tetratricopeptide repeat protein 9C yes no 3 4.089E-06 86.467 By MS/MS By matching 2 1 1.0932 0.98844 5.8373 3 Median 1.0666 1.0345 6.4442 2 0 Median 1.1701 0.97118 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28270000 13743000 14526000 25946000 12768000 13178000 2323400 975630 1347800 0 0 0 0 0 0 0 0 0 0 0 0 39344 3382 41315 208673;208674;208675 212107 212107 1 YLQQELPVR AGRSQDGSHLLKSARYLQQELPVRIAHRIK LLKSARYLQQELPVRIAHRIKGFRCLPFII R Y L V R I 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1144.6241 O14874;H3BTL2;H3BS02 O14874 93 101 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes no 2 0.00047919 121.99 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1336 1.1258 19.645 5 Median 1.1336 1.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.98338 1.0779 NaN 1 0 Median 1.462 1.2456 NaN 1 0 Median 1.0243 1.0334 NaN 1 0 Median 1.9624 1.6861 NaN 1 0 Median 51483000 23136000 28348000 7501100 3567700 3933300 0 0 0 35915000 16256000 19659000 5719600 2476100 3243600 1437700 424030 1013700 909610 411530 498080 39345 1499 41316 208676;208677;208678;208679;208680 212108;212109 212109 2 YLQQIFESQR KLQDPHEREFVICDKYLQQIFESQRMKFSE VICDKYLQQIFESQRMKFSEIPQRLHALLM K Y L Q R M 0 1 0 0 0 3 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1310.6619 Q96GM5;F8VUB0;F8VRQ4 Q96GM5 342 351 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes no 2 0.044206 29.81 By MS/MS By matching 1 1 0.87569 0.79481 67.665 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5253 1.2825 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50274 0.49257 NaN 1 0 Median 1702000 942530 759460 0 0 0 0 0 0 0 0 0 631850 230220 401620 0 0 0 1070100 712310 357840 39346 3659 41317 208681;208682 212110 212110 1 YLQQLAEKPLETR YMALSLQSFCPTTRRYLQQLAEKPLETRTY RRYLQQLAEKPLETRTYEQGPDTPVSADAP R Y L T R T 1 1 0 0 0 2 2 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 13 1 1587.8621 H0Y360;Q01433;A0A590UK85;A0A590UJY6 H0Y360 215 227 AMPD2 AMP deaminase 2 yes no 3 0.0004897 52.265 By MS/MS 1 0.77588 0.79611 NaN 1 Median 0.77588 0.79611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6420700 3309800 3110800 6420700 3309800 3110800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39347 1141 41318 208683 212111 212111 1 YLQSLLAEVER SSRFMKVGYERDFLRYLQSLLAEVERRIRR DFLRYLQSLLAEVERRIRRGHARLALSQNQ R Y L E R R 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 1 1 0 0 11 0 1319.7085 J3KPP4;O95232;D6RDI2;D6RHH0;U3KQT3 J3KPP4 88 98 LUC7L3 Luc7-like protein 3 yes no 2 0.00013586 118.18 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 4 2 2 6 1.1956 1.0744 18.358 18 Median 1.2934 1.3015 18.98 2 1 Median 1.3496 1.1454 2.3822 2 0 Median 0.98097 0.99899 13.93 4 1 Median 1.2296 1.0535 8.904 2 0 Median 1.0694 1.0974 2.5927 2 0 Median 1.2741 1.0489 25.42 6 0 Median 391360000 187550000 203800000 3848500 1675200 2173300 8356000 3552800 4803200 289850000 143000000 146850000 13925000 6024700 7900500 19103000 8994000 10109000 56273000 24302000 31971000 39348 1309 41319 208684;208685;208686;208687;208688;208689;208690;208691;208692;208693;208694;208695;208696;208697;208698;208699;208700;208701 212112;212113;212114;212115;212116;212117;212118;212119;212120;212121;212122;212123;212124;212125;212126;212127;212128;212129;212130;212131;212132;212133;212134 212115 23 YLQSLLAEVERR SSRFMKVGYERDFLRYLQSLLAEVERRIRR FLRYLQSLLAEVERRIRRGHARLALSQNQQ R Y L R R I 1 2 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 1 1 0 0 12 1 1475.8096 J3KPP4;O95232;D6RDI2;D6RHH0;U3KQT3 J3KPP4 88 99 LUC7L3 Luc7-like protein 3 yes no 3 0.00021413 59.542 By matching By MS/MS By matching By MS/MS By matching 1 1 1 3 4 1.2442 1.2338 20.901 10 Median NaN NaN NaN 0 0 Median 1.3018 1.174 NaN 1 0 Median 1.223 1.3209 NaN 1 0 Median 1.9457 1.8149 NaN 1 0 Median 1.2044 1.291 12.358 3 0 Median 1.3027 1.1487 22.44 4 0 Median 39714000 17575000 22139000 0 0 0 693440 256060 437380 23167000 10391000 12776000 1667000 642230 1024800 9489300 4287200 5202200 4697800 1998600 2699200 39349 1309 41320 208702;208703;208704;208705;208706;208707;208708;208709;208710;208711 212135;212136;212137;212138 212138 4 YLQSNSNNWR EKTAISSKRRAQMTKYLQSNSNNWRWFDDR AQMTKYLQSNSNNWRWFDDRSGRWCSYSAS K Y L W R W 0 1 3 0 0 1 0 0 0 0 1 0 0 0 0 2 0 1 1 0 0 0 10 0 1280.5898 Q7Z6Z7 Q7Z6Z7 1609 1618 HUWE1 E3 ubiquitin-protein ligase HUWE1 yes yes 2 0.00039696 79.059 By MS/MS By MS/MS 1 2 1.3401 1.0798 19.301 3 Median 0.99253 0.9947 NaN 1 0 Median 1.5237 1.2455 20.197 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19741000 9278100 10463000 4903600 2338700 2564900 14837000 6939400 7897800 0 0 0 0 0 0 0 0 0 0 0 0 39350 3253 41321 208712;208713;208714 212139;212140 212139 1 YLQSTQAIHDVFSQYK SEYDTPLYFEEDEVRYLQSTQAIHDVFSQY LQSTQAIHDVFSQYKNTARQYAYFYKVIQT R Y L Y K N 1 0 0 1 0 3 0 0 1 1 1 1 0 1 0 2 1 0 2 1 0 0 16 0 1926.9476 Q86TU7;Q6NXR6 Q86TU7 196 211 SETD3 Histone-lysine N-methyltransferase setd3 yes no 3 0.019689 29.733 By MS/MS By MS/MS 1 1 1.1397 1.1312 12.699 2 Median 1.0782 1.034 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.2047 1.2374 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12787000 6681800 6104900 4522200 2242100 2280200 0 0 0 8264400 4439700 3824700 0 0 0 0 0 0 0 0 0 39351 3269 41322 208715;208716 212141;212142 212141 2 YLQTLTTIAAEK ASMVITESPAALQLRYLQTLTTIAAEKNST QLRYLQTLTTIAAEKNSTIVFPLPIDMLQG R Y L E K N 2 0 0 0 0 1 1 0 0 1 2 1 0 0 0 0 3 0 1 0 0 0 12 0 1350.7395 P27105 P27105 252 263 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.046298 44.309 By MS/MS 1 0.72561 0.6114 NaN 1 Median NaN NaN NaN 0 0 Median 0.72561 0.6114 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3699600 2138400 1561200 0 0 0 3699600 2138400 1561200 0 0 0 0 0 0 0 0 0 0 0 0 39352 2150 41323 208717 212143 212143 1 YLQWEIGNK AKRLNLATECLPLDKYLQWEIGNKNLTLDQ CLPLDKYLQWEIGNKNLTLDQMIRILLCLK K Y L N K N 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 1 1 0 0 0 9 0 1149.5819 Q7L0Y3 Q7L0Y3 341 349 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.047041 45.081 By MS/MS 1 1.1946 1.1117 NaN 1 Median 1.1946 1.1117 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9436100 4206800 5229300 9436100 4206800 5229300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39353 3218 41324 208718 212144 212144 1 YLRDPAVHPR TMENCFYLLISQAMRYLRDPAVHPRDKQRM SQAMRYLRDPAVHPRDKQRMKQELSSELST R Y L P R D 1 2 0 1 0 0 0 0 1 0 1 0 0 0 2 0 0 0 1 1 0 0 10 1 1222.6571 Q5SRE5 Q5SRE5 1669 1678 NUP188 Nucleoporin NUP188 homolog yes yes 3 0.010547 33.229 By matching By MS/MS By MS/MS 1 2 1 0.78032 0.89735 1.3936 4 Median 0.83102 0.8887 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.72396 0.89735 0.9827 2 0 Median 1.0115 0.91597 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2789200 1527100 1262100 231790 121390 110410 0 0 0 2140800 1194800 945990 416600 210880 205720 0 0 0 0 0 0 39354 3074 41325 208719;208720;208721;208722 212145;212146;212147;212148;212149;212150 212145 6 YLRPPNTSLFVR ______________________________ MSRYLRPPNTSLFVRNVADDTRSEDLRREF R Y L V R N 0 2 1 0 0 0 0 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 12 1 1461.8092 Q5JRI1;O75494;Q6IQ42;R4GMP8 Q5JRI1 4 15 SRSF10;FUSIP1 Serine/arginine-rich splicing factor 10 yes no 2;3 1.3044E-06 137.16 By MS/MS By MS/MS By MS/MS By MS/MS 3 2 7 4 0.81508 0.80372 11.759 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87178 0.90291 12.392 3 0 Plateau 0.81481 0.7296 21.74 2 0 Median 0.77289 0.83821 11.159 7 2 Median 0.8598 0.74663 8.4811 4 0 Median 508800000 288370000 220440000 0 0 0 0 0 0 42189000 23421000 18769000 6850000 3514600 3335300 413400000 237840000 175560000 46362000 23587000 22775000 39355 1679 41326 208723;208724;208725;208726;208727;208728;208729;208730;208731;208732;208733;208734;208735;208736;208737;208738 212151;212152;212153;212154;212155;212156;212157;212158;212159;212160;212161;212162;212163;212164;212165;212166;212167;212168;212169;212170;212171;212172;212173;212174;212175;212176;212177;212178;212179 212159 29 YLSAATGRPYR GSPSHTFRGLLRELRYLSAATGRPYRDTAA RELRYLSAATGRPYRDTAAYRYLVKAFRAH R Y L Y R D 2 2 0 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 2 0 0 0 11 1 1253.6517 A0A0A6YYJ8;Q96HJ9 A0A0A6YYJ8 20 30 LUC7L2;C7orf55 UPF0562 protein C7orf55 no no 2;3 6.1289E-05 107.83 By MS/MS By MS/MS 2 2 1.2091 1.1152 19.519 4 Median 0.9332 0.93108 14.217 2 0 Median 1.4759 1.2584 5.7905 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 56799000 24977000 31821000 24800000 12711000 12089000 31998000 12266000 19733000 0 0 0 0 0 0 0 0 0 0 0 0 39356 206;3667 41327 208739;208740;208741;208742 212180;212181;212182;212183;212184;212185 212182 6 YLSAQKPLLNDGQFR LPRLPIPKLEDTIRRYLSAQKPLLNDGQFR YLSAQKPLLNDGQFRKTEQFCKSFENGIGK R Y L F R K 1 1 1 1 0 2 0 1 0 0 3 1 0 1 1 1 0 0 1 0 0 0 15 1 1748.921 A0A1B0GTB8;A0A1B0GWC0;A0A1B0GVF3;P23786;A0A1B0GV75;A0A1B0GTM0;A0A1B0GUD9 A0A1B0GTB8 64 78 CPT2 Carnitine O-palmitoyltransferase 2, mitochondrial yes no 2;3 2.9724E-07 149.38 By MS/MS By matching 2 1 0.82665 0.82866 38.248 3 Median 0.80046 0.80199 4.6273 2 1 Median 1.6755 1.5517 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 44370000 22058000 22312000 43707000 21774000 21933000 663110 284520 378590 0 0 0 0 0 0 0 0 0 0 0 0 39357 317 41328 208743;208744;208745 212186;212187 212186 2 YLSATTGFGR WLFHQKPESLNPLIKYLSATTGFGRNYIMT NPLIKYLSATTGFGRNYIMTQKMDLDEDTA K Y L G R N 1 1 0 0 0 0 0 2 0 0 1 0 0 1 0 1 2 0 1 0 0 0 10 0 1071.5349 P56937 P56937 285 294 HSD17B7 3-keto-steroid reductase yes yes 2 0.0004183 101.54 By MS/MS By matching By matching 1 1 1 1.249 1.1215 42.252 3 Median 1.201 1.1215 NaN 1 0 Median 2.7017 2.2709 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.249 1.0668 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11057000 4829000 6228000 8106000 3707100 4398900 2242600 767180 1475400 0 0 0 708360 354740 353620 0 0 0 0 0 0 39358 2515 41329 208746;208747;208748 212188;212189 212188 2 YLSELAEQPER LTKTVKDAVQKNSEKYLSELAEQPERKITR NSEKYLSELAEQPERKITRNQKRKHDEINH K Y L E R K 1 1 0 0 0 1 3 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1333.6514 Q9H7Z6 Q9H7Z6 126 136 KAT8 Histone acetyltransferase KAT8 yes yes 2 0.00011268 127.4 By MS/MS By MS/MS 1 1 0.92367 0.85654 8.5868 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80412 0.80608 NaN 1 0 Median 1.061 0.91016 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13731000 6600000 7131200 0 0 0 0 0 0 10867000 5175200 5692000 2864100 1424900 1439200 0 0 0 0 0 0 39359 3984 41330 208749;208750 212190;212191;212192 212190 3 YLSEVASGDNK ESKVFYLKMKGDYFRYLSEVASGDNKQTTV DYFRYLSEVASGDNKQTTVSNSQQAYQEAF R Y L N K Q 1 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 1 1 0 0 11 0 1181.5564 P31946 P31946 130 140 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 1.8518E-06 162.88 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 1 1 1 1 1.1486 1.0521 14.978 12 Median 1.1446 1.0581 24.236 4 0 Median 1.2051 1.0143 8.4534 4 0 Median 1.1266 1.0573 NaN 1 0 Median 1.2117 1.0061 NaN 1 0 Median 1.0592 1.0806 NaN 1 0 Median 1.0625 0.88437 NaN 1 1 Median 298280000 131590000 166700000 150020000 66169000 83854000 29755000 13109000 16646000 89439000 40001000 49438000 19909000 8368200 11541000 5923400 2448900 3474500 3234300 1492100 1742200 39360 2210 41331 208751;208752;208753;208754;208755;208756;208757;208758;208759;208760;208761;208762 212193;212194;212195;212196;212197;212198;212199;212200;212201;212202;212203;212204;212205;212206;212207;212208;212209;212210;212211;212212;212213 212197 21 YLSEVASGDNKQTTVSNSQQAYQEAFEISK ESKVFYLKMKGDYFRYLSEVASGDNKQTTV SNSQQAYQEAFEISKKEMQPTHPIRLGLAL R Y L S K K 3 0 2 1 0 4 3 1 0 1 1 2 0 1 0 5 2 0 2 2 0 0 30 1 3321.5637 P31946 P31946 130 159 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 3 1.144E-46 114.2 By MS/MS By matching 2 2 1.0412 0.95477 9.7185 4 Median 0.97261 0.9883 16.448 2 0 Median 1.0412 0.95477 0.95012 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 51460000 23514000 27946000 47563000 21706000 25857000 3897200 1807600 2089700 0 0 0 0 0 0 0 0 0 0 0 0 39361 2210 41332 208763;208764;208765;208766 212214;212215;212216 212215 3 YLSEVASGDNKQTTVSNSQQAYQEAFEISKK ESKVFYLKMKGDYFRYLSEVASGDNKQTTV NSQQAYQEAFEISKKEMQPTHPIRLGLALN R Y L K K E 3 0 2 1 0 4 3 1 0 1 1 3 0 1 0 5 2 0 2 2 0 0 31 2 3449.6587 P31946 P31946 130 160 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 3;4 4.7976E-48 111.2 By MS/MS By matching 2 1 1.0422 1.1003 0.68252 3 Median 1.042 1.1005 0.017802 2 0 Median 1.1114 1.0875 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 157420000 69181000 88241000 152000000 66726000 85274000 5422300 2454900 2967400 0 0 0 0 0 0 0 0 0 0 0 0 39362 2210 41333 208767;208768;208769 212217;212218;212219;212220 212218 4 YLSFEAEEK LRRFQASQGENLEGKYLSFEAEEKLAEWVL ENLEGKYLSFEAEEKLAEWVLTQREQQLPV K Y L E K L 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1114.5183 Q7Z3K3 Q7Z3K3 1022 1030 POGZ Pogo transposable element with ZNF domain yes yes 2 0.0053629 57.859 By MS/MS By matching 1 1 1.2826 1.1986 3.2669 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.171 1.2266 NaN 1 0 Median 1.405 1.1712 NaN 1 0 Median 6618900 3002800 3616100 0 0 0 0 0 0 0 0 0 0 0 0 5868200 2695300 3172900 750680 307500 443180 39363 3241 41334 208770;208771 212221 212221 1 YLSFHFK LSWIEEKGPGLKRNRYLSFHFKSGSLENVP GPGLKRNRYLSFHFKSGSLENVPNVGVNKN R Y L F K S 0 0 0 0 0 0 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 0 7 0 940.48069 P53004 P53004 228 234 BLVRA Biliverdin reductase A yes yes 2 0.024489 55.441 By MS/MS By matching By matching 1 1 1 1.2905 1.1525 6.11 3 Plateau 1.2905 1.1706 NaN 1 0 Median 1.2628 1.0597 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2272 1.0475 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38873000 17956000 20917000 34741000 16181000 18560000 3767000 1628800 2138100 0 0 0 364760 145830 218930 0 0 0 0 0 0 39364 2463 41335 208772;208773;208774 212222;212223 212223 2 YLSFTPPEKDGFPSGTPALNAK LDVLKFYDSNTVKQKYLSFTPPEKDGFPSG EKDGFPSGTPALNAKGTEAPAVVTEEEDDD K Y L A K G 2 0 1 1 0 0 1 2 0 0 2 2 0 2 4 2 2 0 1 0 0 0 22 1 2336.1689 Q13177 Q13177 139 160 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 yes yes 3 0.008535 21.865 By MS/MS By matching 1 1 1.5211 1.525 172.14 2 Median 0.47955 0.45146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4.8248 5.1511 NaN 1 0 Median NaN NaN NaN 0 0 Median 8798000 5032400 3765600 7587600 4789800 2797800 0 0 0 0 0 0 0 0 0 1210400 242650 967730 0 0 0 39365 2794 41336 208775;208776 212224;212225 212225 2 YLSGIAHFLEK TVGILINSGSRYEAKYLSGIAHFLEKLAFS YEAKYLSGIAHFLEKLAFSSTARFDSKDEI K Y L E K L 1 0 0 0 0 0 1 1 1 1 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1276.6816 Q10713 Q10713 104 114 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2;3 0.0052448 46.462 By MS/MS By matching By matching By matching 3 2 5 2 1.2261 1.1553 25.056 12 Median 1.1731 1.0949 33.358 3 0 Plateau 1.416 1.2539 17.02 2 0 Median 1.1778 1.1966 19.287 5 0 Median 1.6134 1.4074 16.636 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19487000 8923600 10564000 12056000 5658000 6398300 462020 175350 286670 5831800 2652500 3179300 1137400 437740 699630 0 0 0 0 0 0 39366 2754 41337 208777;208778;208779;208780;208781;208782;208783;208784;208785;208786;208787;208788 212226;212227;212228 212228 3 YLSHSEFK KPPKYLLDSCAPLLRYLSHSEFKDLILPTI SCAPLLRYLSHSEFKDLILPTIQKSLLRSP R Y L F K D 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 2 0 0 1 0 0 0 8 0 1009.4869 Q92616 Q92616 252 259 GCN1L1 Translational activator GCN1 yes yes 2 0.019561 47.067 By matching By MS/MS 1 2 1.4095 1.2315 16.839 3 Plateau 0.93583 0.90514 NaN 1 0 Median 1.3793 1.2097 2.5336 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2503300 1128400 1374900 412750 215230 197520 2090500 913180 1177400 0 0 0 0 0 0 0 0 0 0 0 0 39367 3544 41338 208789;208790;208791 212229;212230 212230 2 YLSLEQKTEELEGQIK HCSQLESHLKEYKEKYLSLEQKTEELEGQI LSLEQKTEELEGQIKKLEADSLEVKASKEQ K Y L I K K 0 0 0 0 0 2 4 1 0 1 3 2 0 0 0 1 1 0 1 0 0 0 16 1 1906.9888 Q15075 Q15075 718 733 EEA1 Early endosome antigen 1 yes yes 3 4.1193E-05 65.172 By MS/MS By matching 1 1 0.70532 0.73836 22.999 2 Median 0.89543 0.86876 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.55557 0.62754 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9976100 5156400 4819600 9164700 4624600 4540200 0 0 0 811320 531880 279440 0 0 0 0 0 0 0 0 0 39368 2926 41339 208792;208793 212231;212232 212232 2 YLSLHDNK NTVVYSSNKIDDTIRYLSLHDNKYIRYFPG KIDDTIRYLSLHDNKYIRYFPGHSKRVVAL R Y L N K Y 0 0 1 1 0 0 0 0 1 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 988.49779 Q6UXN9 Q6UXN9 91 98 WDR82 WD repeat-containing protein 82 yes yes 2 0.0023926 109.01 By MS/MS 1 1.0019 0.84411 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0019 0.84411 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3135400 1421800 1713600 0 0 0 0 0 0 0 0 0 3135400 1421800 1713600 0 0 0 0 0 0 39369 3190 41340 208794 212233 212233 1 YLSNAYAR YRGFTIPEAFRGVHRYLSNAYAREEFASTC AFRGVHRYLSNAYAREEFASTCPDDEEIEL R Y L A R E 2 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 8 0 956.47158 O00299 O00299 209 216 CLIC1 Chloride intracellular channel protein 1 yes yes 2 0.0022895 138.62 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 1 2 1 1.0785 0.92113 27.903 9 Median 1.0155 0.95359 11.475 2 0 Median 1.2377 1.038 16.955 3 0 Plateau 0.95228 0.91501 NaN 1 0 Median 1.5476 1.2841 64.353 2 0 Median 1.0785 1.0951 NaN 1 0 Median NaN NaN NaN 0 0 Median 78666000 36549000 42116000 44181000 20548000 23633000 19226000 8361500 10865000 10155000 5874500 4280700 4906200 1688900 3217300 196920 76267 120650 0 0 0 39370 1456 41341 208795;208796;208797;208798;208799;208800;208801;208802;208803;208804 212234;212235;212236;212237;212238;212239;212240;212241;212242;212243;212244 212240 11 YLSQQWAK GAKQNTGVWLVKVPKYLSQQWAKASGRGEV WLVKVPKYLSQQWAKASGRGEVGKLRIAKT K Y L A K A 1 0 0 0 0 2 0 0 0 0 1 1 0 0 0 1 0 1 1 0 0 0 8 0 1022.5185 P13984 P13984 26 33 GTF2F2 General transcription factor IIF subunit 2 yes yes 2 0.0053542 85.359 By MS/MS By MS/MS By MS/MS By matching 1 1 2 1 1.1941 1.047 16.483 5 Median 1.2562 1.1892 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1391 1.0675 NaN 1 1 Median 1.2171 1.0166 4.1765 2 0 Median NaN NaN NaN 0 0 Median 0.81511 0.76452 NaN 1 0 Median 21145000 9652300 11492000 5852000 2649500 3202500 0 0 0 11057000 5118000 5939100 3384900 1566600 1818300 0 0 0 850800 318230 532570 39371 1999 41342 208805;208806;208807;208808;208809 212245;212246;212247 212246 3 YLSVPPSPNISTSESR PKSILAKPSSSPDPRYLSVPPSPNISTSES LSVPPSPNISTSESRSPPEGDTTLFLSRLS R Y L S R S 0 1 1 0 0 0 1 0 0 1 1 0 0 0 3 5 1 0 1 1 0 0 16 0 1732.8632 Q9BTC0 Q9BTC0 1024 1039 DIDO1 Death-inducer obliterator 1 yes yes 2 1.266E-09 118.48 By MS/MS By matching 2 2 0.49805 0.4948 14.442 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42073 0.45567 5.0329 2 0 Median 0.63659 0.5643 11.969 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24575000 16469000 8106300 0 0 0 0 0 0 23276000 15597000 7678600 1299200 871450 427720 0 0 0 0 0 0 39372 3824 41343 208810;208811;208812;208813 212248;212249;212250 212249 3 YLTAEAFGFK EAVQIQFGLINCGNKYLTAEAFGFKVNASA NCGNKYLTAEAFGFKVNASASSLKKKQIWT K Y L F K V 2 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 1 0 0 0 10 0 1145.5757 Q16658 Q16658 23 32 FSCN1 Fascin yes yes 2 0.00095511 81.296 By MS/MS By MS/MS By MS/MS By matching 7 5 2 1 1.0542 0.99681 33.134 14 Median 1.008 0.96467 18.072 6 0 Median 1.2083 1.0238 53.502 5 0 Median 1.0197 1.0119 2.5311 2 0 Median NaN NaN NaN 0 0 Median 1.4717 1.422 NaN 1 0 Median NaN NaN NaN 0 0 Median 77599000 43203000 34396000 42596000 26450000 16145000 13974000 6370600 7603000 20413000 10073000 10339000 0 0 0 617590 308870 308720 0 0 0 39373 2993 41344 208814;208815;208816;208817;208818;208819;208820;208821;208822;208823;208824;208825;208826;208827;208828 212251;212252;212253;212254;212255;212256;212257;212258;212259 212253 9 YLTAEETDK PPAIQSLINLLADNRYLTAEETDKIINYLR LLADNRYLTAEETDKIINYLRERKERLMRS R Y L D K I 1 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 1 0 0 0 9 0 1068.4975 Q9HCD5 Q9HCD5 354 362 NCOA5 Nuclear receptor coactivator 5 yes yes 2 0.0058853 56.258 By MS/MS 1 0.91835 0.97732 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91835 0.97732 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3185000 1621900 1563100 0 0 0 0 0 0 3185000 1621900 1563100 0 0 0 0 0 0 0 0 0 39374 4028 41345 208829 212260;212261 212261 2 YLTAEETDKIINYLR PPAIQSLINLLADNRYLTAEETDKIINYLR YLTAEETDKIINYLRERKERLMRSSTDSLP R Y L L R E 1 1 1 1 0 0 2 0 0 2 2 1 0 0 0 0 2 0 2 0 0 0 15 1 1840.9571 Q9HCD5 Q9HCD5 354 368 NCOA5 Nuclear receptor coactivator 5 yes yes 3 0.00011652 59.306 By matching By matching By MS/MS By MS/MS 2 1 3 4 0.99386 1.0083 14.395 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1102 1.151 17.206 2 0 Median 1.1748 1.1331 NaN 1 0 Median 0.93016 0.99752 12.787 3 0 Median 1.0037 0.91207 10.283 4 0 Median 32063000 15423000 16640000 0 0 0 0 0 0 10831000 5028900 5802300 1280200 567850 712390 12651000 6376600 6274700 7300700 3449900 3850800 39375 4028 41346 208830;208831;208832;208833;208834;208835;208836;208837;208838;208839 212262;212263;212264;212265 212263 4 YLTEHPDPNNENIVGYNNK FFRFTADEARDLIQRYLTEHPDPNNENIVG HPDPNNENIVGYNNKKCWPRDARMRLMKHD R Y L N K K 0 0 5 1 0 0 2 1 1 1 1 1 0 0 2 0 1 0 2 1 0 0 19 0 2230.0291 Q6P2Q9 Q6P2Q9 1113 1131 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 8.104E-19 123.97 By MS/MS By MS/MS By MS/MS 2 3 1 0.92497 0.85585 33.05 6 Median NaN NaN NaN 0 0 Median 0.70284 0.60115 55.382 2 0 Median NaN NaN NaN 0 0 Median 0.92969 0.90051 11.553 3 2 Median 0.73576 0.77032 NaN 1 0 Median NaN NaN NaN 0 0 Median 59125000 29758000 29366000 0 0 0 18405000 9638800 8766100 0 0 0 28025000 12902000 15123000 12695000 7217700 5477400 0 0 0 39376 3157 41347 208840;208841;208842;208843;208844;208845 212266;212267;212268;212269;212270;212271;212272 212272 7 YLTEHPDPNNENIVGYNNKK FFRFTADEARDLIQRYLTEHPDPNNENIVG PDPNNENIVGYNNKKCWPRDARMRLMKHDV R Y L K K C 0 0 5 1 0 0 2 1 1 1 1 2 0 0 2 0 1 0 2 1 0 0 20 1 2358.124 Q6P2Q9 Q6P2Q9 1113 1132 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 3.121E-14 102.89 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.71357 0.72952 8.8736 8 Median 0.72028 0.69736 5.1412 2 0 Median NaN NaN NaN 0 0 Median 0.62553 0.7271 1.7039 2 0 Median 0.9061 0.85447 2.937 2 0 Median 0.69443 0.74804 7.1184 2 0 Median NaN NaN NaN 0 0 Median 125130000 72695000 52432000 20123000 11289000 8833500 0 0 0 75815000 44871000 30944000 11780000 5819900 5960300 17409000 10715000 6693600 0 0 0 39377 3157 41348 208846;208847;208848;208849;208850;208851;208852;208853 212273;212274;212275;212276;212277;212278;212279;212280;212281;212282;212283;212284;212285;212286;212287 212278 15 YLTESYGTGQDIDDR ESGAGKTENTKFVLRYLTESYGTGQDIDDR YLTESYGTGQDIDDRIVEANPLLEAFGNAK R Y L D R I 0 1 0 3 0 1 1 2 0 1 1 0 0 0 0 1 2 0 2 0 0 0 15 0 1731.7588 A0A0A0MRM8;A0A590UJ40;E7EW20;Q9UM54;A0A0D9SGC1;A0A590UKB0;A0A590UJ75;A0A590UK22;A0A590UK71;A0A590UJW9;A0A590UJY4;A0A590UK86 A0A0A0MRM8 167 181 MYO6 Unconventional myosin-VI yes no 2 2.3429E-08 154.66 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.12 0.99465 23.551 5 Median 1.0611 1.0271 8.3784 2 0 Median 1.6097 1.3762 NaN 1 0 Median 0.65094 0.71595 NaN 1 0 Median 1.1655 0.99465 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29602000 15067000 14535000 19645000 9959600 9685300 2677500 1012000 1665500 6299000 3572500 2726500 980780 522800 457980 0 0 0 0 0 0 39378 164 41349 208854;208855;208856;208857;208858 212288;212289;212290;212291 212288 4 YLTFMEER YELGNEPERKLWVDRYLTFMEERGSPVSSL RKLWVDRYLTFMEERGSPVSSLPAVGKKPL R Y L E R G 0 1 0 0 0 0 2 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 8 0 1087.5008 A0A3F2YNW7;Q8NFD5;H0Y7H8;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;A0A1B0GV63;H0Y2R3;H0Y3S9 A0A3F2YNW7 1159 1166 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.0095557 60.59 By MS/MS By matching 1 1 0.84733 0.8319 2.1984 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7439 0.81907 NaN 1 0 Median 0.96514 0.84493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5717100 3078700 2638400 0 0 0 0 0 0 5398800 2915800 2483000 318300 162880 155420 0 0 0 0 0 0 39379 449 41350 208859;208860 212292;212293 212292 2 YLTGAWR SWLQMGKDLLFIRLRYLTGAWRLEQTRKMN DLLFIRLRYLTGAWRLEQTRKMN_______ R Y L W R L 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 7 0 865.44464 Q9Y673 Q9Y673 310 316 ALG5 Dolichyl-phosphate beta-glucosyltransferase yes yes 2 0.016985 67.035 By MS/MS By matching 1 1 1.3852 1.2348 3.2633 2 Median 1.3447 1.2637 NaN 1 0 Median 1.427 1.2067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7553200 3203300 4349900 6009500 2463900 3545600 1543600 739420 804210 0 0 0 0 0 0 0 0 0 0 0 0 39380 4479 41351 208861;208862 212294;212295 212294 2 YLTLDGFDAMFR GLLEINRMTHKLLSRYLTLDGFDAMFREAN LSRYLTLDGFDAMFREANHNVSAPYGRITL R Y L F R E 1 1 0 2 0 0 0 1 0 0 2 0 1 2 0 0 1 0 1 0 0 0 12 0 1447.6806 Q7L576 Q7L576 815 826 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 2 0.0031404 46.891 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.1006 1.0739 11.374 5 Median 1.129 1.1127 5.0152 2 0 Median 1.0427 0.9147 NaN 1 0 Median 1.0989 1.2053 NaN 1 0 Median 1.114 0.97919 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5001100 2134200 2866900 1767100 751210 1015900 392960 188550 204410 2609600 1079600 1530000 231440 114870 116570 0 0 0 0 0 0 39381 3224 41352 208863;208864;208865;208866;208867 212296;212297;212298;212299 212299 4 YLTMDDLTTALEGNR LDLAHQWGEFKVSERYLTMDDLTTALEGNR YLTMDDLTTALEGNRVREMFGSGTACVVCP R Y L N R V 1 1 1 2 0 0 1 1 0 0 3 0 1 0 0 0 3 0 1 0 0 0 15 0 1711.8087 P54687 P54687 310 324 BCAT1 Branched-chain-amino-acid aminotransferase, cytosolic yes yes 2 0.00016426 76.655 By MS/MS By MS/MS By matching 1 1 1 0.9484 0.93434 21.223 3 Median 1.2107 1.2401 NaN 1 0 Median 0.9484 0.81851 NaN 1 0 Median 0.91751 0.93434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4025800 1981600 2044200 736370 319490 416880 2954600 1484700 1469800 334890 177370 157520 0 0 0 0 0 0 0 0 0 39382 2484 41353 208868;208869;208870 212300;212301;212302 212302 3 YLTNAYSR YRNFDIPKEMTGIWRYLTNAYSRDEFTNTC EMTGIWRYLTNAYSRDEFTNTCPSDKEVEI R Y L S R D 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 8 0 986.48214 Q9Y696 Q9Y696 220 227 CLIC4 Chloride intracellular channel protein 4 yes yes 2 0.0023085 111.82 By MS/MS By MS/MS By MS/MS 2 1 1 1.0546 0.96392 4.9138 4 Median 1.0234 0.96392 0.28178 2 0 Median 1.0901 0.92174 NaN 1 0 Median 1.0799 1.0377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42524000 21244000 21280000 26962000 13817000 13145000 6163600 3014800 3148800 9398200 4412700 4985500 0 0 0 0 0 0 0 0 0 39383 4483 41354 208871;208872;208873;208874 212303;212304;212305;212306;212307;212308;212309 212309 7 YLTNKVDR ALERVLRLPAVASKRYLTNKVDRSVGGLVA PAVASKRYLTNKVDRSVGGLVAQQQCVGPL R Y L D R S 0 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 8 1 1007.54 O15067 O15067 679 686 PFAS Phosphoribosylformylglycinamidine synthase yes yes 2 0.025671 75.854 By matching By MS/MS By matching 1 1 1 0.88557 0.91359 16.252 3 Median 0.88557 0.91359 NaN 1 0 Median 1.0114 0.9611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.62206 0.70959 NaN 1 0 Median NaN NaN NaN 0 0 Median 2357600 1155400 1202200 221320 111930 109380 1665600 735020 930530 0 0 0 0 0 0 470760 308450 162310 0 0 0 39384 1518 41355 208875;208876;208877 212310 212310 1 YLTQVATGQPHEGSSYSSR ASVQHVEAELSAQIRYLTQVATGQPHEGSS VATGQPHEGSSYSSRKDCQMALKRVDYARL R Y L S R K 1 1 0 0 0 2 1 2 1 0 1 0 0 0 1 4 2 0 2 1 0 0 19 0 2066.9657 Q9P086 Q9P086 69 87 MED11 Mediator of RNA polymerase II transcription subunit 11 yes yes 3 5.8012E-10 87.16 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1.0357 0.91102 6.9708 5 Median 1.0626 1.0366 NaN 1 0 Median 1.0357 0.88231 NaN 1 0 Median 0.89912 0.91102 NaN 1 0 Median 1.1248 0.88809 NaN 1 0 Median 0.91901 0.97937 NaN 1 0 Median NaN NaN NaN 0 0 Median 36536000 17501000 19035000 3420700 1751600 1669100 21078000 9874100 11204000 10160000 5008100 5151500 762960 308580 454380 1114300 558530 555750 0 0 0 39385 4201 41356 208878;208879;208880;208881;208882 212311;212312;212313;212314;212315;212316;212317;212318;212319 212317 9 YLTTAVITNK QYLNAIQTMCPHILRYLTTAVITNKDVRKR PHILRYLTTAVITNKDVRKRRQVLKDLVKV R Y L N K D 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 3 0 1 1 0 0 10 0 1122.6285 P60228;E5RGA2;E5RHS5 P60228 256 265 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 2 0.00040842 108.81 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 2 2 2 1 1.1675 1.0424 19.246 9 Median 1.0678 0.98437 NaN 1 0 Median 1.1058 0.94255 NaN 1 0 Median 1.1927 1.2332 13.224 2 0 Median 1.227 1.0924 6.6247 2 0 Median 0.7992 0.77501 14.719 2 0 Median 1.3618 1.1433 NaN 1 0 Median 108700000 46664000 62039000 27014000 12481000 14534000 9857400 6511500 3345800 21787000 9164300 12623000 43546000 15415000 28131000 5729300 2732700 2996600 768610 359800 408810 39386 2524 41357 208883;208884;208885;208886;208887;208888;208889;208890;208891;208892 212320;212321;212322;212323;212324;212325;212326;212327 212324 8 YLTTAVITNKDVR QYLNAIQTMCPHILRYLTTAVITNKDVRKR LRYLTTAVITNKDVRKRRQVLKDLVKVIQQ R Y L V R K 1 1 1 1 0 0 0 0 0 1 1 1 0 0 0 0 3 0 1 2 0 0 13 1 1492.8249 P60228;E5RGA2;E5RHS5 P60228 256 268 EIF3E Eukaryotic translation initiation factor 3 subunit E yes no 3 0.0013297 41.644 By MS/MS By matching 1 1 1.2378 1.2613 38.421 2 Median 0.96224 0.96126 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.5923 1.6551 NaN 1 0 Median NaN NaN NaN 0 0 Median 7036300 3116300 3920100 4246200 2176900 2069300 0 0 0 0 0 0 0 0 0 2790100 939350 1850800 0 0 0 39387 2524 41358 208893;208894 212328 212328 1 YLTVAAIFR DSKNMMAACDPRHGRYLTVAAIFRGRMSMK DPRHGRYLTVAAIFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 9 0 1052.6019 Q13885;Q9BVA1 Q9BVA1 310 318 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain no no 2 0.00098836 86.794 By MS/MS By MS/MS By MS/MS By matching By matching By matching 2 2 1 2 1 3 1.5224 1.3285 18.478 11 Median 1.2612 1.2312 16.803 2 0 Median 1.4124 1.1949 2.88 2 0 Median 1.1204 1.1001 NaN 1 0 Median 1.5555 1.349 3.7682 2 0 Median 2.0855 2.0964 NaN 1 0 Median 1.5434 1.3339 10.556 3 0 Median 170560000 74457000 96107000 57005000 27607000 29398000 87066000 35105000 51961000 16574000 8052300 8521700 2457600 921590 1536000 1870500 706230 1164200 5591100 2064700 3526500 39388 3849;2844 41359 208895;208896;208897;208898;208899;208900;208901;208902;208903;208904;208905 212329;212330;212331;212332;212333 212330 5 YLTVAAVFR DAKNMMAACDPRHGRYLTVAAVFRGRMSMK DPRHGRYLTVAAVFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 9 0 1038.5862 P04350;Q5JP53;P07437;Q5ST81;P68371 P68371 310 318 TUBB4A;TUBB;TUBB4B Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain no no 2 0.00022533 140.98 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 8 7 7 5 7 7 1.3018 1.1708 25.746 41 Median 1.1935 1.1696 9.2349 8 0 Median 1.2101 1.0061 3.0864 7 0 Median 1.3018 1.2869 25.161 7 0 Median 1.3678 1.1716 13.459 5 0 Median 2.0022 2.0514 16.995 7 1 Median 1.4593 1.1543 13.388 7 0 Median 2167200000 952070000 1215200000 702090000 316610000 385480000 971620000 431610000 540010000 248430000 109340000 139090000 8518200 3524000 4994200 95897000 31543000 64354000 140690000 59441000 81246000 39389 2634;1887;1849 41360 208906;208907;208908;208909;208910;208911;208912;208913;208914;208915;208916;208917;208918;208919;208920;208921;208922;208923;208924;208925;208926;208927;208928;208929;208930;208931;208932;208933;208934;208935;208936;208937;208938;208939;208940;208941;208942;208943;208944;208945;208946 212334;212335;212336;212337;212338;212339;212340;212341;212342;212343;212344;212345;212346;212347;212348;212349;212350;212351;212352;212353;212354;212355;212356;212357;212358;212359;212360;212361;212362;212363;212364;212365;212366;212367;212368;212369;212370;212371;212372;212373;212374;212375;212376;212377;212378;212379;212380 212354 47 YLTVATVFR DARNMMAACDPRHGRYLTVATVFRGPMSMK DPRHGRYLTVATVFRGPMSMKEVDEQMLAI R Y L F R G 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 2 0 0 9 0 1068.5968 A0A0B4J269;Q13509;Q9BUF5;K7ESM5 Q9BUF5 310 318 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 0.0011181 85.064 By MS/MS By matching By MS/MS By matching By matching 3 1 2 1 1 1.1696 1.1184 42.1 8 Median 1.1554 1.1118 2.59 3 0 Median 1.0409 0.93321 NaN 1 0 Median 0.8357 0.84625 51.708 2 0 Median NaN NaN NaN 0 0 Median 2.7963 2.7011 NaN 1 0 Median 1.5759 1.2405 NaN 1 0 Median 24099000 10904000 13195000 17011000 7696100 9314900 118180 60809 57367 6313700 2956000 3357700 0 0 0 424580 97073 327510 231380 94176 137210 39390 3838;216 41361 208947;208948;208949;208950;208951;208952;208953;208954 212381;212382;212383 212381 3 YLTVQNTVR EVLLPLGSEPELREKYLTVQNTVRFGRILE PELREKYLTVQNTVRFGRILEDLDSLGVLI K Y L V R F 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 2 0 0 9 0 1092.5928 Q9Y305;H7C5Q2;C9J7L8 Q9Y305 104 112 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes no 2 8.6898E-11 176.4 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1 1.2413 1.0538 18.18 6 Median 0.8897 0.83152 NaN 1 0 Median 1.3505 1.1548 16.959 2 0 Median 0.89827 0.87927 NaN 1 0 Median 1.4592 1.2538 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2603 1.0841 NaN 1 0 Median 159880000 73199000 86678000 44524000 22559000 21965000 52872000 23888000 28984000 22284000 11782000 10502000 35635000 12430000 23205000 0 0 0 4562000 2541000 2021000 39391 4400 41362 208955;208956;208957;208958;208959;208960 212384;212385;212386;212387;212388;212389;212390;212391;212392;212393;212394 212390 11 YLVGGLSGVDEGLSSTENLK NGGSQPNVSSQFRLRYLVGGLSGVDEGLSS LSGVDEGLSSTENLKGFIEIIIPLLIECWV R Y L L K G 0 0 1 1 0 0 2 4 0 0 4 1 0 0 0 3 1 0 1 2 0 0 20 0 2037.0266 Q9NXF1 Q9NXF1 299 318 TEX10 Testis-expressed sequence 10 protein yes yes 2 4.9159E-19 123.02 By MS/MS By matching By MS/MS 1 1 1 0.95476 1.0544 29.152 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95476 1.0544 NaN 1 0 Median 1.5658 1.39 NaN 1 0 Median 0.7517 0.7761 NaN 1 0 Median NaN NaN NaN 0 0 Median 7343200 3848800 3494300 0 0 0 0 0 0 4642000 2346100 2295900 225200 82928 142270 2476000 1419800 1056100 0 0 0 39392 4163 41363 208961;208962;208963 212395;212396;212397 212396 3 YLVIDEAHR MLIKEKSVFKKFNWRYLVIDEAHRIKNEKS KKFNWRYLVIDEAHRIKNEKSKLSEIVREF R Y L H R I 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1114.5771 A0A0A0MRP6;B7ZLQ5;P28370;O60264 O60264 304 312 SMARCA1;SMARCA5 Probable global transcription activator SNF2L1;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 no no 2 8.2384E-11 176.66 By MS/MS By matching By MS/MS By MS/MS 1 1 1 2 0.36735 0.36477 71.337 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98759 1.0854 NaN 1 0 Median 0.18162 0.18211 NaN 1 0 Median 0.36735 0.36477 NaN 1 1 Median 0.56876 0.46294 63.457 2 2 Median 136410000 87980000 48430000 0 0 0 0 0 0 38120000 17492000 20628000 3843500 2834100 1009400 60709000 44278000 16431000 33737000 23376000 10361000 39393 1608;643;167 41364 208964;208965;208966;208967;208968 212398;212399;212400;212401;212402 212399 5 YLVLDEADR VDMMERGKIGLDFCKYLVLDEADRMLDMGF GLDFCKYLVLDEADRMLDMGFEPQIRRIVE K Y L D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 9 0 1092.5451 A0A2U3TZJ9;A0A2R8Y645;O00571;A0A2R8YFR4;A0A0D9SF53;A0A0D9SG12;A0A2R8YCW1;A0A2R8YF78;A0A0D9SFB3;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8Y5G6;F6S8Q4;A0A2R8YDH3;A0A2R8Y7T2;A0A2R8YDT5;O15523;D6RCM4;Q9NQI0 A0A2U3TZJ9 342 350 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 2 0.0004831 121.62 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 2 1 2 3 3 4 1.0929 1.0253 16.643 15 Median 1.154 1.0887 8.4735 2 0 Median 1.1498 1.4181 NaN 1 0 Median 1.169 1.1785 11.621 2 0 Median 1.137 0.95491 7.1503 3 0 Median 1.1797 1.1878 15.444 3 0 Median 1.0642 0.86595 5.2339 4 0 Median 192550000 85071000 107480000 52133000 23105000 29028000 226170 112030 114150 61472000 26943000 34528000 14223000 6157400 8066000 38651000 16922000 21729000 25847000 11830000 14017000 39394 263 41365 208969;208970;208971;208972;208973;208974;208975;208976;208977;208978;208979;208980;208981;208982;208983 212403;212404;212405;212406;212407;212408;212409;212410;212411;212412;212413;212414;212415;212416;212417;212418;212419;212420;212421 212408 19 YLVMDEADR DHLENTKGFNLRALKYLVMDEADRILNMDF NLRALKYLVMDEADRILNMDFETEVDKILK K Y L D R I 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1110.5016 Q9H0S4;F5H1N9 Q9H0S4 170 178 DDX47 Probable ATP-dependent RNA helicase DDX47 yes no 2 0.00064128 107.66 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1352 1.0339 7.4996 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0266 1.0036 NaN 1 0 Median 1.1261 0.96952 NaN 1 0 Median 1.1443 1.1505 NaN 1 0 Median 1.2351 1.0652 NaN 1 0 Median 49696000 22987000 26709000 0 0 0 0 0 0 25237000 11522000 13715000 14899000 6560000 8339000 6642200 3619200 3023000 2917500 1285800 1631700 39395 3928 41366 208984;208985;208986;208987 212422;212423;212424;212425;212426;212427 212426 6 YLVNEGFEYR QSSHEYRHWLLVYARYLVNEGFEYRLREIC LVYARYLVNEGFEYRLREICKDLLGPVHYS R Y L Y R L 0 1 1 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 2 1 0 0 10 0 1288.6088 P54198 P54198 945 954 HIRA Protein HIRA yes yes 2 0.0029636 70.919 By MS/MS By MS/MS By matching 1 1 1 1.2909 1.1002 37.862 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0196 1.0873 NaN 1 1 Median 1.2909 1.1002 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.4345 2.1071 NaN 1 0 Median 7610600 3361800 4248800 0 0 0 0 0 0 5633100 2628000 3005100 1259600 553710 705880 0 0 0 717880 180070 537810 39396 2481 41367 208988;208989;208990 212428;212429 212428 2 YLVPQAR VSGYVAQEKLAIAERYLVPQARALCGLDES EKLAIAERYLVPQARALCGLDESKAKLSSD R Y L A R A 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 845.47594 K7EKE6;P36776;K7EJE8 K7EKE6 559 565 LONP1 Lon protease homolog, mitochondrial yes no 2 0.011345 80.377 By MS/MS By MS/MS 1 1 1.0145 1.0431 23.054 2 Median 0.89963 0.88623 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1439 1.2278 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5093300 2506800 2586500 2243800 1207200 1036600 0 0 0 2849500 1299600 1549900 0 0 0 0 0 0 0 0 0 39397 1370 41368 208991;208992 212430;212431;212432;212433 212431 4 YLVQDGAQVEAK ALHMAARSGQAEVVRYLVQDGAQVEAKAKD VVRYLVQDGAQVEAKAKDDQTPLHISARLG R Y L A K A 2 0 0 1 0 2 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1319.6721 Q12955 Q12955 484 495 ANK3 Ankyrin-3 yes yes 2 5.2805E-06 112.36 By MS/MS By MS/MS By MS/MS 1 1 1 0.51697 0.53401 87.343 2 Median 0.29952 0.28796 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.8923 0.99032 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10696000 5544900 5151300 3219900 1948500 1271400 0 0 0 7476400 3596500 3879900 0 0 0 0 0 0 0 0 0 39398 2773 41369 208993;208994;208995 212434;212435;212436 212435 3 YLVQDTDEFILPTGANK TGMNPLSPYLNVDPRYLVQDTDEFILPTGA VQDTDEFILPTGANKTRGRFELAFFTIGGC R Y L N K T 1 0 1 2 0 1 1 1 0 1 2 1 0 1 1 0 2 0 1 1 0 0 17 0 1922.9626 Q5SRD1;O14925;B4DDK6 Q5SRD1 52 68 TIMM23B;TIMM23 Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23 yes no 2 4.0506E-07 90.653 By MS/MS By matching 1 1 0.9577 0.92707 1.7172 2 Median 0.98327 0.91588 NaN 1 0 Median 0.9328 0.9384 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8796200 4384100 4412100 8179900 4066800 4113100 616220 317230 298990 0 0 0 0 0 0 0 0 0 0 0 0 39399 1503 41370 208996;208997 212437;212438 212438 2 YLVQHNMVDVLVTTAGGVEEDLIK YTSNLISSGIRETIRYLVQHNMVDVLVTTA VLVTTAGGVEEDLIKCLAPTYLGEFSLRGK R Y L I K C 1 0 1 2 0 1 2 2 1 1 3 1 1 0 0 0 2 0 1 5 0 0 24 0 2642.3626 Q5J8M5;A0A087WZK0;P49366;M0R264 Q5J8M5 118 141 DHPS Deoxyhypusine synthase yes no 3 5.6416E-06 38.237 By MS/MS 1 1.1051 0.94447 NaN 1 Median NaN NaN NaN 0 0 Median 1.1051 0.94447 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1311600 677740 633910 0 0 0 1311600 677740 633910 0 0 0 0 0 0 0 0 0 0 0 0 39400 95 41371 208998 212439;212440 212439 2 YLVVLYYNANR KNACDHLSGFNVCNRYLVVLYYNANRAFQK VCNRYLVVLYYNANRAFQKMDTKKKEEQLK R Y L N R A 1 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 3 2 0 0 11 0 1386.7296 Q9Y3B4 Q9Y3B4 86 96 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.00013475 86.011 By MS/MS By matching 1 1 0.97673 1.0118 6.4031 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0437 1.0587 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.91405 0.96705 NaN 1 0 Median NaN NaN NaN 0 0 Median 9453600 4697400 4756200 0 0 0 0 0 0 6465900 3264000 3202000 0 0 0 2987700 1433400 1554200 0 0 0 39401 4415 41372 208999;209000 212441;212442;212443 212442 3 YLWNNIK MDSDTTGKLGFEEFKYLWNNIKRWQAIYKQ KLGFEEFKYLWNNIKRWQAIYKQFDTDRSG K Y L I K R 0 0 2 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 7 0 949.50215 A0A0C4DGQ5;P04632;U3KQE2;K7EIV0;A0A075B7C0;K7EKD8;K7ELJ7;U3KPR7;Q96L46 A0A0C4DGQ5 166 172 CAPNS1;CAPNS2 Calpain small subunit 1;Calpain small subunit 2 yes no 2 0.0094412 84.025 By MS/MS By matching By MS/MS 1 2 1 1.0891 0.96791 10.658 4 Median 0.96336 0.89357 NaN 1 0 Median 1.2521 1.0668 2.4537 2 0 Median 0.93304 0.8836 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27905000 14235000 13670000 21622000 10992000 10630000 1848700 847780 1000900 4434200 2394900 2039300 0 0 0 0 0 0 0 0 0 39402 251 41373 209001;209002;209003;209004 212444;212445;212446;212447 212445 4 YLYEIAR LCDEFKADEKKFWGKYLYEIARRHPYFYAP DEKKFWGKYLYEIARRHPYFYAPELLYYAN K Y L A R R 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 926.48617 CON__P02769;A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;H7C013 CON__P02769 161 167 ALB Serum albumin no no 2 3.1353E-13 146.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 5 3 2 4 1 0.059716 0.059176 140.76 14 Median 0.068943 0.065387 159.31 5 5 Median 0.019525 0.015792 226.72 3 3 Median 0.11994 0.12032 99.54 2 2 Median 0.045609 0.036473 31.042 3 3 Plateau 0.060787 0.060926 NaN 1 1 Median NaN NaN NaN 0 0 Median 645240000 634290000 10951000 441700000 437350000 4356200 145370000 144240000 1129000 41267000 36736000 4531500 9819100 9560800 258260 7073100 6397000 676090 0 0 0 + 39403 746;240 41374 209005;209006;209007;209008;209009;209010;209011;209012;209013;209014;209015;209016;209017;209018;209019 212448;212449;212450;212451;212452;212453;212454;212455;212456;212457;212458;212459;212460;212461;212462;212463;212464 212452 17 YLYEIARR LCDEFKADEKKFWGKYLYEIARRHPYFYAP EKKFWGKYLYEIARRHPYFYAPELLYYANK K Y L R R H 1 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 8 1 1082.5873 CON__P02769;A0A0C4DGB6;CON__P02768-1;P02768;H0YA55;H7C013 CON__P02769 161 168 ALB Serum albumin no no 2 0.00048074 101.21 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1921100 1921100 0 1921100 1921100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 39404 746;240 41375 209020 212465 212465 1 YLYHGNTNPELAFESAK NPRTKKADNVVNIARYLYHGNTNPELAFES YHGNTNPELAFESAKILCCISCNSNIQIKL R Y L A K I 2 0 2 0 0 0 2 1 1 0 2 1 0 1 1 1 1 0 2 0 0 0 17 0 1952.9268 Q92621 Q92621 902 918 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 6.0091E-64 229.9 By MS/MS By MS/MS By matching By matching 4 4 1 1 0.95577 0.96263 10.912 10 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8857 0.9744 5.0645 4 0 Median 1.1557 1.0308 13.507 4 0 Median 0.876 0.92027 NaN 1 0 Median 1.0055 0.8667 NaN 1 0 Median 170490000 87053000 83438000 0 0 0 0 0 0 157660000 80785000 76873000 8519800 3924600 4595200 3873200 2124600 1748600 441100 219480 221620 39405 3547 41376 209021;209022;209023;209024;209025;209026;209027;209028;209029;209030 212466;212467;212468;212469;212470;212471;212472 212468 7 YLYLSTMER QNAVRNVLDGELLNRYLYLSTMERSELAKK GELLNRYLYLSTMERSELAKKIGTTPDIIL R Y L E R S 0 1 0 0 0 0 1 0 0 0 2 0 1 0 0 1 1 0 2 0 0 0 9 0 1174.5692 Q10570;A0A087X101 Q10570 1407 1415 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes no 2 6.3889E-32 209.36 By MS/MS By MS/MS 4 2 1.091 1.115 7.9186 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0386 1.115 7.9639 4 1 Median 1.3031 1.1393 10.989 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 70109000 33209000 36900000 0 0 0 0 0 0 67849000 32252000 35597000 2259900 956980 1302900 0 0 0 0 0 0 39406 2753 41377;41378 209031;209032;209033;209034;209035;209036 212473;212474;212475;212476;212477;212478;212479 212475 1475 7 YLYLTPQDYKR HVAWVDPEDPYKGYRYLYLTPQDYKRVSAL KGYRYLYLTPQDYKRVSALNSVHCEHVEDE R Y L K R V 0 1 0 1 0 1 0 0 0 0 2 1 0 0 1 0 1 0 3 0 0 0 11 1 1458.7507 Q13085;Q59FY4;A0A087WWN5 Q13085 1750 1760 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase yes no 3 0.00080173 69.672 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39407 2784 41379 209037 212480 212480 1 YLYTLVITDK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK VRCSRYLYTLVITDKEKAEKLKQSLPPGLA R Y L D K E 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 2 0 2 1 0 0 10 0 1227.6751 P63173;J3KT73;J3QL01 P63173 41 50 RPL38 60S ribosomal protein L38 yes no 2 0.0051177 66.435 By MS/MS By MS/MS 2 1 1.1118 1.0134 1.0394 2 Median 1.1118 1.0134 1.0394 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17192000 8060200 9132000 17192000 8060200 9132000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39408 2622 41380 209038;209039;209040 212481;212482;212483 212482 3 YLYTLVITDKEK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK CSRYLYTLVITDKEKAEKLKQSLPPGLAVK R Y L E K A 0 0 0 1 0 0 1 0 0 1 2 2 0 0 0 0 2 0 2 1 0 0 12 1 1484.8126 P63173;J3KT73;J3QL01 P63173 41 52 RPL38 60S ribosomal protein L38 yes no 2;3 2.0251E-05 118.4 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 3 1.1401 1.0531 16.258 9 Median 1.0993 1.0295 0.29109 2 0 Median 1.1651 1.0101 5.897 2 0 Median 1.1541 1.1498 1.6774 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1411 1.1427 30.664 3 0 Median 401860000 182970000 218890000 85161000 40521000 44640000 76493000 34732000 41762000 211810000 94177000 117630000 0 0 0 0 0 0 28395000 13537000 14858000 39409 2622 41381 209041;209042;209043;209044;209045;209046;209047;209048;209049 212484;212485;212486;212487;212488;212489;212490;212491;212492;212493;212494;212495;212496;212497;212498 212487 15 YLYVDKNFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K Y L A K K 4 0 3 2 0 1 0 0 0 1 2 2 0 1 1 0 0 1 2 1 0 0 21 1 2453.2379 P35579;Q5BKV1;B1AH99 P35579 9 29 MYH9 Myosin-9 yes no 3 9.1957E-08 50.397 By MS/MS By MS/MS 1 1 0.86523 0.90239 3.5775 2 Median 0.98058 0.92551 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76344 0.87985 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 31265000 15552000 15712000 27425000 13275000 14150000 0 0 0 3839200 2276800 1562400 0 0 0 0 0 0 0 0 0 39410 2244 41382 209050;209051 212499;212500;212501 212500 3 YLYYTGR KSVFPEQANNNEWARYLYYTGRIKAIQLEY ANNNEWARYLYYTGRIKAIQLEYSEARRTM R Y L G R I 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 3 0 0 0 7 0 934.45487 O43242 O43242 288 294 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0054115 97.071 By matching By MS/MS By matching 1 1 1 0.96163 0.83128 33.787 3 Median 0.77464 0.73415 NaN 1 0 Median 0.96163 0.83128 NaN 1 0 Median 1.3183 1.3886 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33095000 16756000 16339000 14267000 7107200 7160200 17060000 8757300 8303000 1767300 891420 875860 0 0 0 0 0 0 0 0 0 39411 1560 41383 209052;209053;209054 212502 212502 1 YMACCLLYR EPANQMVKCDPRHGKYMACCLLYRGDVVPK DPRHGKYMACCLLYRGDVVPKDVNAAIATI K Y M Y R G 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 0 0 2 0 0 0 9 0 1248.5454 Q9BQE3;F5H5D3;A0A1W2PQM2;A6NHL2;P68363;P68366;Q71U36 P68363 312 320 TUBA1C;TUBAL3;TUBA1B;TUBA4A;TUBA1A Tubulin alpha-1C chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain no no 2 0.00087759 92.925 By matching By MS/MS By MS/MS 1 5 1 1.2597 1.1181 36.826 7 Median 1.2597 1.2274 NaN 1 0 Median 1.1946 1.0054 18.605 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2.5953 2.6066 NaN 1 0 Median NaN NaN NaN 0 0 Median 24484000 10323000 14160000 6049300 3061100 2988200 12624000 5726300 6898000 0 0 0 0 0 0 5810100 1535900 4274200 0 0 0 39412 2633;3212;1034 41384 209055;209056;209057;209058;209059;209060;209061 212503;212504;212505;212506 212503 4 YMAEALLLR KIISECSKEIDAEGKYMAEALLLRATFYLL IDAEGKYMAEALLLRATFYLLIGNANAAKP K Y M L R A 2 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 0 0 1 0 0 0 9 0 1078.5845 O94826 O94826 327 335 TOMM70A Mitochondrial import receptor subunit TOM70 yes yes 2 0.00047072 97.798 By MS/MS 1 1.3433 1.2695 NaN 1 Median 1.3433 1.2695 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20808000 8717900 12090000 20808000 8717900 12090000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39413 1728 41385 209062 212507 212507 1 YMDAWNTVSR LDNSEQKCIAMCMDRYMDAWNTVSRAYNSR MCMDRYMDAWNTVSRAYNSRLQRERANM__ R Y M S R A 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 10 0 1241.5499 Q9Y5L4;K7EIT2 Q9Y5L4 73 82 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes no 2 0.00037716 103.55 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 3 2 4 2 3 1 1.0465 1.041 13.422 15 Median 0.91492 0.85952 9.2528 3 0 Median 1.3688 1.134 19.981 2 0 Median 1.0284 1.035 5.0081 4 0 Median 1.6046 1.2633 3.4072 2 0 Median 1.037 1.055 10.461 3 0 Median 1.3365 1.041 NaN 1 0 Median 58330000 27406000 30925000 22489000 11090000 11398000 6579700 2481100 4098600 19816000 9885700 9930700 5025600 1951000 3074600 3986600 1825700 2160900 433260 171810 261460 39414 4462 41386;41387 209063;209064;209065;209066;209067;209068;209069;209070;209071;209072;209073;209074;209075;209076;209077 212508;212509;212510;212511;212512;212513;212514;212515;212516;212517 212511 1993 10 YMDLLWR PHLVRMAKVDQNRVRYMDLLWRYYEKNRSF KVDQNRVRYMDLLWRYYEKNRSFSNAARVL R Y M W R Y 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 7 0 995.48987 O75694;E9PF10 O75694 1077 1083 NUP155 Nuclear pore complex protein Nup155 yes no 2 0.0095581 83.801 By matching By MS/MS By matching By matching 2 1 2 1 1.2134 1.2449 19.897 6 Median 1.3787 1.372 9.0955 2 0 Median NaN NaN NaN 0 0 Median 1.125 1.2374 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99167 1.0176 29.368 2 0 Median 1.1937 1.0556 NaN 1 0 Median 7866300 3426200 4440100 967180 337500 629680 0 0 0 5663100 2553700 3109400 0 0 0 1109000 489890 619140 126980 45087 81896 39415 1692 41388 209078;209079;209080;209081;209082;209083 212518;212519 212519 2 YMEAFKPFLGIGLK AVSTLVEVLGGEFLKYMEAFKPFLGIGLKN KYMEAFKPFLGIGLKNYAEYQVCLAAVGLV K Y M L K N 1 0 0 0 0 0 1 2 0 1 2 2 1 2 1 0 0 0 1 0 0 0 14 1 1612.8687 Q14974;J3KTM9 Q14974 646 659 KPNB1 Importin subunit beta-1 yes no 2;3 4.4943E-05 103.26 By MS/MS By matching By MS/MS By matching By matching 4 2 4 2 2 1.039 1.0833 16.934 14 Median 0.99158 1.0344 10.825 4 1 Median 1.1929 1.1392 2.6891 2 0 Median 0.96763 1.0991 26.408 4 0 Median NaN NaN NaN 0 0 Median 1.0323 1.1296 17.753 2 0 Median 1.2257 1.0555 9.3208 2 0 Median 70391000 34244000 36146000 25567000 12591000 12976000 13146000 6152800 6993200 29454000 14388000 15065000 0 0 0 1384900 693310 691600 838990 419240 419750 39416 2904 41389 209084;209085;209086;209087;209088;209089;209090;209091;209092;209093;209094;209095;209096;209097 212520;212521;212522;212523;212524;212525;212526 212524 7 YMEENDQLK AFKKQAESASEAAKKYMEENDQLKKGAAVD SEAAKKYMEENDQLKKGAAVDGGKLDVGNA K Y M L K K 0 0 1 1 0 1 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 9 0 1168.507 P51572;A0A2R8Y5M6;C9JSP1;C9JQ75;C9J0M4;C9JMD7 P51572 150 158 BCAP31 B-cell receptor-associated protein 31 yes no 2 0.0011692 84.498 By MS/MS By matching 1 1 1.0841 0.96622 12.759 2 Median 1.1378 1.0574 NaN 1 0 Median 1.033 0.88287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7002900 3065200 3937700 6023900 2601000 3422900 979000 464200 514810 0 0 0 0 0 0 0 0 0 0 0 0 39417 2436 41390 209098;209099 212527;212528 212527 2 YMEENDQLKK AFKKQAESASEAAKKYMEENDQLKKGAAVD EAAKKYMEENDQLKKGAAVDGGKLDVGNAE K Y M K K G 0 0 1 1 0 1 2 0 0 0 1 2 1 0 0 0 0 0 1 0 0 0 10 1 1296.602 P51572;A0A2R8Y5M6;C9JSP1;C9JQ75;C9J0M4;C9JMD7 P51572 150 159 BCAP31 B-cell receptor-associated protein 31 yes no 2;3 0.00025998 78.655 By MS/MS By MS/MS By matching 3 6 1 1.0684 1.0395 17.626 9 Median 1.1592 1.1787 25.662 3 0 Plateau 1.1599 1.0611 11.706 5 1 Median 0.8251 0.843 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29795000 13540000 16255000 19837000 8811800 11025000 9287300 4382300 4905000 670920 346090 324830 0 0 0 0 0 0 0 0 0 39418 2436 41391 209100;209101;209102;209103;209104;209105;209106;209107;209108;209109 212529;212530;212531;212532;212533;212534;212535;212536 212530 8 YMEHEERPK KLQELKKYGQPIQMKYMEHEERPKALNDLG QPIQMKYMEHEERPKALNDLGKKIQLVMKV K Y M P K A 0 1 0 0 0 0 3 0 1 0 0 1 1 0 1 0 0 0 1 0 0 0 9 1 1217.5499 O95757;E9PDE8 O95757 692 700 HSPA4L Heat shock 70 kDa protein 4L yes no 3 0.052525 18.78 By matching By MS/MS 1 1 0.98889 1.0068 8.3403 2 Median 0.92055 0.94914 NaN 1 0 Median 1.0623 1.068 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 568080 278910 289170 154660 64666 89994 413420 214250 199170 0 0 0 0 0 0 0 0 0 0 0 0 39419 1790 41392 209110;209111 212537;212538 212538 2 YMEVSGNLR DQINSDHRTRAMQDRYMEVSGNLRDLYDDK RAMQDRYMEVSGNLRDLYDDKDGLRKEELN R Y M L R D 0 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 9 0 1067.507 Q12874 Q12874 50 58 SF3A3 Splicing factor 3A subunit 3 yes yes 2 2.7881E-18 161.68 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 2 3 4 2 3 1.1145 1.1504 14.209 9 Linear 1.2223 1.1578 NaN 1 0 Median 1.2987 1.1223 NaN 1 0 Median 0.93019 0.94481 21.892 2 2 Median 1.181 0.99988 3.2609 2 1 Median 1.0995 1.0927 NaN 1 1 Median 1.0184 0.83627 3.3708 2 1 Median 126610000 60459000 66152000 15466000 6647700 8818800 20606000 10859000 9746200 34501000 16942000 17559000 13243000 5912400 7330200 34642000 16225000 18416000 8153900 3872000 4281900 39420 2767 41393;41394 209112;209113;209114;209115;209116;209117;209118;209119;209120;209121;209122;209123;209124;209125;209126 212539;212540;212541;212542;212543;212544;212545;212546;212547;212548;212549;212550;212551;212552;212553;212554 212543 1483 16 YMFSRPFR ______________________________ GKRRGTRYMFSRPFRKHGVVPLATYMRIYK R Y M F R K 0 2 0 0 0 0 0 0 0 0 0 0 1 2 1 1 0 0 1 0 0 0 8 1 1102.5382 P46778;G3V1B3;M0R181;M0R3I5 P46778 13 20 RPL21 60S ribosomal protein L21 yes no 2 0.020823 81.784 By MS/MS By MS/MS By matching 2 1 1 1.175 1.237 32.095 4 Median 0.93135 1.0038 46.452 2 1 Median 1.7149 1.4564 NaN 1 0 Median 1.0586 1.0976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 137070000 56071000 80996000 106200000 42717000 63482000 25636000 10583000 15054000 5232800 2772200 2460500 0 0 0 0 0 0 0 0 0 39421 2344 41395 209127;209128;209129;209130 212555;212556;212557;212558 212558 4 YMFSRPFRK ______________________________ KRRGTRYMFSRPFRKHGVVPLATYMRIYKK R Y M R K H 0 2 0 0 0 0 0 0 0 0 0 1 1 2 1 1 0 0 1 0 0 0 9 2 1230.6332 P46778;G3V1B3;M0R181;M0R3I5 P46778 13 21 RPL21 60S ribosomal protein L21 yes no 3 0.0017859 57.59 By MS/MS By MS/MS By MS/MS 1 1 2 1.1574 1.1527 16.894 4 Median NaN NaN NaN 0 0 Median 1.175 1.0882 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1159 0.96751 NaN 1 0 Median 1.1692 1.325 11.551 2 0 Median NaN NaN NaN 0 0 Median 25824000 11505000 14319000 0 0 0 13554000 5806100 7748300 0 0 0 3175500 1414200 1761400 9094300 4284900 4809500 0 0 0 39422 2344 41396 209131;209132;209133;209134 212559;212560;212561;212562;212563;212564 212562 6 YMGAAAMYLISK VREGKFGAVEGAVAKYMGAAAMYLISKRLK VAKYMGAAAMYLISKRLKSRHRLQDNVRED K Y M S K R 3 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 0 0 2 0 0 0 12 0 1317.6461 Q9H7Z7;A6NHH0;X6RJ95 Q9H7Z7 280 291 PTGES2 Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form yes no 2 0.00093641 59.067 By MS/MS By matching 1 1 1.4035 1.2373 12.755 2 Median 1.226 1.1306 NaN 1 0 Median 1.6068 1.3541 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13855000 6166000 7688900 11930000 5371700 6557800 1925300 794240 1131000 0 0 0 0 0 0 0 0 0 0 0 0 39423 3985 41397 209135;209136 212565 212565 1 YMGDLSGGQVLKK GQNEPELLVAHAYTRYMGDLSGGQVLKKVA TRYMGDLSGGQVLKKVAQRALKLPSTGEGT R Y M K K V 0 0 0 1 0 1 0 3 0 0 2 2 1 0 0 1 0 0 1 1 0 0 13 1 1394.7228 P30519;I3L159;I3L1F5;A0A087WT44 P30519 157 169 HMOX2 Heme oxygenase 2 yes no 2;3 4.2296E-05 92.538 By MS/MS By MS/MS By matching 2 1 1 0.7525 0.72839 35.008 4 Median 0.7525 0.72839 24.858 2 0 Median 1.11 1.0001 NaN 1 0 Median 0.42925 0.46043 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 68390000 37519000 30871000 58615000 31093000 27522000 2727500 1263100 1464400 7047700 5163200 1884500 0 0 0 0 0 0 0 0 0 39424 2194 41398 209137;209138;209139;209140 212566;212567;212568;212569;212570 212566 5 YMIGVTYGGDDIPLSPYR DGTYAVTYIPDKTGRYMIGVTYGGDDIPLS GVTYGGDDIPLSPYRIRATQTGDASKCLAT R Y M Y R I 0 1 0 2 0 0 0 3 0 2 1 0 1 0 2 1 1 0 3 1 0 0 18 0 2015.9663 O75369;E7EN95 O75369 1588 1605 FLNB Filamin-B yes no 2 1.3371E-07 87.618 By MS/MS By MS/MS By matching 3 1 1 0.68778 0.69588 29.834 5 Median 0.80686 0.76425 21.574 3 1 Median 0.54595 0.45359 NaN 1 0 Median 0.62767 0.69588 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12886000 7168500 5718000 10800000 5856500 4943700 1306600 815800 490800 779640 496180 283460 0 0 0 0 0 0 0 0 0 39425 1664 41399;41400 209141;209142;209143;209144;209145 212571;212572;212573;212574;212575;212576 212573 533 6 YMIVDEGHR YIIKDKHILAKIRWKYMIVDEGHRMKNHHC AKIRWKYMIVDEGHRMKNHHCKLTQVLNTH K Y M H R M 0 1 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 9 0 1118.5179 P51532;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;A0A2R8YG32;A0A2R8Y7F3;A0A2R8Y4C5;A0A2R8Y6N0;A0A2R8YGP5;A0A2R8Y6V2;A0A2R8YF58;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF80;A0A2R8YDA1;A0A2R8YCY3;A0A2R8YFV8;A0A2R8Y4R6;P51531;F6VDE0;A0A0U1RQZ9 P51532 877 885 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 no no 2 5.96E-05 151.27 By MS/MS By MS/MS By MS/MS 1 2 1 0.95075 0.92968 6.836 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89524 0.97573 NaN 1 0 Median 1.0097 0.88581 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17309000 8638500 8670800 0 0 0 0 0 0 15759000 7836800 7922600 1549800 801680 748160 0 0 0 0 0 0 39426 366;2433 41401 209146;209147;209148;209149 212577;212578;212579;212580;212581 212578 5 YMLLPNQVWDSIIQQATK GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQ LPNQVWDSIIQQATKNVDILKDPETVKQLG K Y M T K N 1 0 1 1 0 3 0 0 0 2 2 1 1 0 1 1 1 1 1 1 0 0 18 0 2147.1085 O14980 O14980 657 674 XPO1 Exportin-1 yes yes 2 1.0418E-05 54.143 By MS/MS By MS/MS By matching 1 1 1 0.95948 0.94664 5.9799 3 Median 0.89724 0.899 NaN 1 0 Median 1.1037 0.94664 NaN 1 0 Median 0.95948 1.0129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2792700 1404500 1388300 1785300 918560 866700 923710 441010 482710 83756 44895 38860 0 0 0 0 0 0 0 0 0 39427 1510 41402 209150;209151;209152 212582;212583;212584 212584 3 YMLPLDNLK ESLSWYKDEEEKEKKYMLPLDNLKIRDVEK EEKEKKYMLPLDNLKIRDVEKGFMSNKHVF K Y M L K I 0 0 1 1 0 0 0 0 0 0 3 1 1 0 1 0 0 0 1 0 0 0 9 0 1105.5842 P50570 P50570 563 571 DNM2 Dynamin-2 no no 2 0.0018211 77.282 By MS/MS By matching By MS/MS By matching By MS/MS 1 1 1 2 1 0.95376 0.89813 22.135 6 Median 0.83915 0.82714 NaN 1 0 Median 0.9425 0.82462 NaN 1 0 Median 0.89225 0.9752 NaN 1 0 Median 1.0918 0.94278 21.579 2 0 Median 1.3812 1.4196 NaN 1 0 Median NaN NaN NaN 0 0 Median 16115000 8559100 7555500 3574900 1895900 1679000 643720 313690 330030 9477700 5306000 4171700 953520 457300 496230 1464800 586180 878590 0 0 0 39428 2417 41403 209153;209154;209155;209156;209157;209158 212585;212586;212587;212588;212589 212588 5 YMLTHQELASDGEIETK TVSVANEKALAKCEKYMLTHQELASDGEIE LTHQELASDGEIETKLIKGDIYKTRGGGQS K Y M T K L 1 0 0 1 0 1 3 1 1 1 2 1 1 0 0 1 2 0 1 0 0 0 17 0 1963.9197 A0A2U3TZL8;H7BYN4;Q02241 A0A2U3TZL8 708 724 KIF23 Kinesin-like protein;Kinesin-like protein KIF23 yes no 3 0.0005047 36.593 By MS/MS 1 0.74119 0.62684 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74119 0.62684 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1797400 1076700 720740 0 0 0 0 0 0 0 0 0 1797400 1076700 720740 0 0 0 0 0 0 39429 407 41404 209159 212590 212590 1 YMNSDTTSPELR DDPVEAERWSDYVERYMNSDTTSPELREHL VERYMNSDTTSPELREHLAQKPVFLPRNLR R Y M L R E 0 1 1 1 0 0 1 0 0 0 1 0 1 0 1 2 2 0 1 0 0 0 12 0 1412.6242 Q96ST3 Q96ST3 1105 1116 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.00058566 73.887 By MS/MS By MS/MS By MS/MS 1 1 2 0.66224 0.67853 33.466 4 Median NaN NaN NaN 0 0 Median 1.2839 1.1047 NaN 1 0 Median 0.60259 0.66289 NaN 1 0 Median 0.63782 0.58418 24.471 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8872600 4544100 4328500 0 0 0 1705600 709690 995890 4416200 2218700 2197600 2750800 1615800 1135000 0 0 0 0 0 0 39430 3737 41405 209160;209161;209162;209163 212591;212592;212593 212591 3 YMNSLLIGELSPEQPSFEPTK DPFVAFHINKGLVKKYMNSLLIGELSPEQP IGELSPEQPSFEPTKNKELTDEFRELRATV K Y M T K N 0 0 1 0 0 1 3 1 0 1 3 1 1 1 3 3 1 0 1 0 0 0 21 0 2379.1668 O60427;H7C2V0;A0A0A0MR51 O60427 84 104 FADS1 Fatty acid desaturase 1 yes no 2;3 0.041393 19.578 By MS/MS 2 0.54182 0.53639 10.374 2 Median 0.54182 0.53639 10.374 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5324300 3578400 1745900 5324300 3578400 1745900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39431 1614 41406 209164;209165 212594;212595;212596 212596 3 YMPAVTSTPTVNQHETSTSK LQLSAASVGNCPTKKYMPAVTSTPTVNQHE TSTPTVNQHETSTSKSVFEPEDSSIVDNEL K Y M S K S 1 0 1 0 0 1 1 0 1 0 0 1 1 0 2 3 5 0 1 2 0 0 20 0 2178.0263 A0A4W8VX11;Q15154 A0A4W8VX11 789 808 PCM1 Pericentriolar material 1 protein yes no 3 0.00011198 36.856 By MS/MS By matching 1 1 0.59478 0.5439 22.371 2 Median 0.66308 0.63711 NaN 1 0 Median 0.53351 0.46432 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5772600 3536500 2236100 4796400 3063700 1732700 976210 472790 503420 0 0 0 0 0 0 0 0 0 0 0 0 39432 479 41407 209166;209167 212597;212598 212597 2 YMPDICVIR VSVRLAQQISDEASRYMPDICVIRAIQKII SDEASRYMPDICVIRAIQKIIWASGCGSLQ R Y M I R A 0 1 0 1 1 0 0 0 0 2 0 0 1 0 1 0 0 0 1 1 0 0 9 0 1165.5624 Q93008;O00507 Q93008 1232 1240 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 0.0068944 53.166 By MS/MS 2 1.13 0.96906 5.4235 2 Median NaN NaN NaN 0 0 Median 1.13 0.96906 5.4235 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6959900 3059300 3900600 0 0 0 6959900 3059300 3900600 0 0 0 0 0 0 0 0 0 0 0 0 39433 3573 41408 209168;209169 212599;212600 212599 2 YMPHAVLK RKFRHDKRVYLGALKYMPHAVLKLLENMPM VYLGALKYMPHAVLKLLENMPMPWEQIRDV K Y M L K L 1 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 1 1 0 0 8 0 957.51061 Q6P2Q9 Q6P2Q9 94 101 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.02114 45.882 By matching By MS/MS By MS/MS By MS/MS By matching 2 1 2 1 1 1.0637 1.0047 13.775 7 Median NaN NaN NaN 0 0 Median 0.98054 0.86215 12.651 2 0 Median 0.75955 0.84443 NaN 1 0 Median 1.2182 1.11 10.208 2 0 Median 0.97808 1.0235 NaN 1 0 Median 1.1724 1.0047 NaN 1 0 Median 27550000 14064000 13486000 0 0 0 7198900 3789600 3409300 6647500 3735500 2912000 3937900 1775300 2162600 7965200 3960200 4005000 1800500 803090 997380 39434 3157 41409 209170;209171;209172;209173;209174;209175;209176 212601;212602;212603;212604;212605 212603 5 YMPQNPCIIATK IEIKINHEGEVNRARYMPQNPCIIATKTPS RARYMPQNPCIIATKTPSSDVLVFDYTKHP R Y M T K T 1 0 1 0 1 1 0 0 0 2 0 1 1 0 2 0 1 0 1 0 0 0 12 0 1434.6999 Q09028 Q09028 132 143 RBBP4 Histone-binding protein RBBP4 yes yes 2 0.0028032 73.499 By MS/MS 1 1.6706 1.5964 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6706 1.5964 NaN 1 1 Median NaN NaN NaN 0 0 Median 22783000 8114000 14669000 0 0 0 0 0 0 0 0 0 0 0 0 22783000 8114000 14669000 0 0 0 39435 2746 41410 209177 212606 212606 1 YMPQNPHIIATK CEIKINHEGEVNRARYMPQNPHIIATKTPS RARYMPQNPHIIATKTPSSDVLVFDYTKHP R Y M T K T 1 0 1 0 0 1 0 0 1 2 0 1 1 0 2 0 1 0 1 0 0 0 12 0 1411.7282 Q16576;E9PC52;Q5JP01 Q16576 131 142 RBBP7 Histone-binding protein RBBP7 yes no 2;3 3.2154E-06 110.53 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 3 3 4 4 1 0.78689 0.70547 24.583 18 Median 0.7729 0.71372 20.895 3 0 Median 0.98175 0.84318 3.6082 3 0 Median 0.71015 0.67686 15.762 3 0 Plateau 0.95109 0.85919 24.14 4 0 Median 0.71178 0.67987 39.385 4 1 Median 0.83933 0.68299 NaN 1 0 Median 379300000 204140000 175160000 41613000 24181000 17432000 25911000 12188000 13723000 110610000 64167000 46448000 142650000 73038000 69617000 53023000 27683000 25340000 5482300 2879900 2602400 39436 2990 41411 209178;209179;209180;209181;209182;209183;209184;209185;209186;209187;209188;209189;209190;209191;209192;209193;209194;209195 212607;212608;212609;212610;212611;212612;212613;212614;212615;212616;212617;212618;212619;212620;212621;212622;212623;212624;212625;212626 212626 20 YMSPEQISSQDYGK LKNDGKRTRSKGTLRYMSPEQISSQDYGKE RYMSPEQISSQDYGKEVDLYALGLILAELL R Y M G K E 0 0 0 1 0 2 1 1 0 1 0 1 1 0 1 3 0 0 2 0 0 0 14 0 1631.7137 P19525 P19525 454 467 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 1.2687E-07 113.63 By MS/MS By MS/MS By MS/MS 1 2 3 1.028 0.96301 20.12 6 Median 0.68375 0.64719 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.028 1.0647 12.489 2 0 Median 1.1129 0.95463 10.387 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32356000 16885000 15471000 8504600 4995100 3509400 0 0 0 18769000 9415500 9353700 5081800 2474200 2607700 0 0 0 0 0 0 39437 2067 41412;41413 209196;209197;209198;209199;209200;209201 212627;212628;212629;212630;212631;212632;212633 212627 833 7 YMSPMEAQEFGILDK KQSLQVIESAMERDRYMSPMEAQEFGILDK YMSPMEAQEFGILDKVLVHPPQDGEDEPTL R Y M D K V 1 0 0 1 0 1 2 1 0 1 1 1 2 1 1 1 0 0 1 0 0 0 15 0 1757.8004 Q16740;M0R208 Q16740 229 243 CLPP ATP-dependent Clp protease proteolytic subunit, mitochondrial;ATP-dependent Clp protease proteolytic subunit yes no 2 0.00033753 65.574 By MS/MS By matching 1 1 0.92911 0.87191 16.73 2 Median 0.83015 0.77463 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0399 0.98141 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12255000 6836000 5419100 11310000 6337400 4972600 0 0 0 945060 498550 446500 0 0 0 0 0 0 0 0 0 39438 2995 41414 209202;209203 212634 212634 1 YMTDGILLR AIRFEDCTSENTLIKYMTDGILLRESLREA ENTLIKYMTDGILLRESLREADLDHYSAII K Y M L R E 0 1 0 1 0 0 0 1 0 1 2 0 1 0 0 0 1 0 1 0 0 0 9 0 1080.5638 Q92620 Q92620 627 635 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 2 0.017009 42.109 By MS/MS By matching By matching 1 1 1 0.85125 0.90482 2.8061 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85125 0.93497 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83394 0.88419 NaN 1 0 Median 1.0432 0.90482 NaN 1 0 Median 5288100 2919000 2369100 0 0 0 0 0 0 3227700 1769100 1458700 0 0 0 1927400 1074800 852590 132950 75113 57833 39439 3546 41415 209204;209205;209206 212635 212635 1 YMTDGMLLR SIRFEDCSSAKTILKYMTDGMLLREAMNDP AKTILKYMTDGMLLREAMNDPLLERYGVII K Y M L R E 0 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 1 0 1 0 0 0 9 0 1098.5202 O60231;A0A140T947;F5H658;Q14562;O43143 O43143 235 243 DHX16;DHX8;DHX15 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16;ATP-dependent RNA helicase DHX8;Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 no no 2 0.00078048 98.299 By MS/MS By matching By MS/MS By matching By MS/MS By matching 3 1 3 2 3 3 1.2914 1.2625 37.849 15 Median 1.2903 1.2493 7.6786 3 1 Median 0.88384 0.79253 NaN 1 0 Median 1.2914 1.3694 20.87 3 0 Median 0.8374 0.7455 94.121 2 0 Median 1.471 1.4613 9.8827 3 0 Median 1.5003 1.2288 28.872 3 0 Median 78535000 33961000 44574000 28417000 12654000 15763000 104390 47702 56688 21590000 9342400 12248000 689330 276920 412410 24973000 10385000 14588000 2761100 1255100 1505900 39440 1553;1605;1040 41416 209207;209208;209209;209210;209211;209212;209213;209214;209215;209216;209217;209218;209219;209220;209221 212636;212637;212638;212639;212640;212641;212642;212643 212638 8 YMTLNPSTK SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS LLDPYKYMTLNPSTKRKNTGSPDRKPSKKS K Y M T K R 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 2 0 1 0 0 0 9 0 1053.5165 Q9UIG0 Q9UIG0 298 306 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0032081 66.692 By MS/MS 1 0.60342 0.6328 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60342 0.6328 NaN 1 0 Median NaN NaN NaN 0 0 Median 4739200 2462300 2276900 0 0 0 0 0 0 0 0 0 0 0 0 4739200 2462300 2276900 0 0 0 39441 4290 41417 209222 212644 212644 1 YMTQFADQNFSDFLFR VQMCEQTDNQSRLQRYMTQFADQNFSDFLF MTQFADQNFSDFLFRWYLEKGKRGKLLSQP R Y M F R W 1 1 1 2 0 2 0 0 0 0 1 0 1 4 0 1 1 0 1 0 0 0 16 0 2028.904 Q8WUM0 Q8WUM0 888 903 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 1.1003E-09 100.72 By MS/MS By matching By MS/MS 2 1 4 1.0431 1.1456 14.641 7 Median 1.0154 1.0195 28.418 2 0 Median 1.3851 1.2225 NaN 1 0 Median 1.0399 1.1429 8.7807 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13507000 6355300 7151900 1689500 706920 982530 499080 217210 281870 11319000 5431200 5887500 0 0 0 0 0 0 0 0 0 39442 3492 41418;41419 209223;209224;209225;209226;209227;209228;209229 212645;212646;212647;212648;212649;212650 212647 1747 6 YMVADKFTELQK PTLRQAAEDKSWRVRYMVADKFTELQKAVG RVRYMVADKFTELQKAVGPEITKTDLVPAF R Y M Q K A 1 0 0 1 0 1 1 0 0 0 1 2 1 1 0 0 1 0 1 1 0 0 12 1 1471.7381 P30153;B3KQV6;C9J9C1 P30153 261 272 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes no 2;3 0.00026518 131.46 By MS/MS By matching By MS/MS By MS/MS 5 1 2 1 1.0496 0.99674 22.197 9 Median 0.76696 0.7393 18.057 5 0 Median 1.1051 1.0359 NaN 1 0 Median 1.0284 1.0741 5.1199 2 0 Median NaN NaN NaN 0 0 Median 1.2198 1.3016 NaN 1 0 Median NaN NaN NaN 0 0 Median 159310000 75225000 84086000 128750000 61047000 67699000 2638500 1233500 1405000 21343000 9863900 11479000 0 0 0 6583500 3080600 3502900 0 0 0 39443 2190 41420 209230;209231;209232;209233;209234;209235;209236;209237;209238 212651;212652;212653;212654;212655;212656;212657;212658 212657 8 YMVALQIAR CSQFPTPEAVLEGARYMVALQIAREPLVRQ VLEGARYMVALQIAREPLVRQVLRQTFQER R Y M A R E 2 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1063.5848 Q7KZ85 Q7KZ85 590 598 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.00091162 91.041 By MS/MS By MS/MS 1 1 1.4595 1.3158 15.601 2 Median 1.5324 1.4693 NaN 1 0 Median 1.39 1.1784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7630800 2823600 4807200 4662900 1750200 2912700 2967900 1073400 1894500 0 0 0 0 0 0 0 0 0 0 0 0 39444 3213 41421 209239;209240 212659;212660;212661 212659 3 YMVENHGEDYK KKGNTLSRDLIDYVRYMVENHGEDYKVSGS DYVRYMVENHGEDYKVSGSGPVGWLGRRPG R Y M Y K V 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 2 1 0 0 11 0 1383.5765 D6RIC3;A0A0C4DGU5;A0A087X2G6;Q9Y3C1 D6RIC3 121 131 NOP16 Nucleolar protein 16 yes no 2 0.025094 33.263 By matching By MS/MS 1 1 0.96166 0.89356 8.3157 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82059 0.84253 NaN 1 0 Median 1.127 0.94768 NaN 1 0 Median 1837700 955550 882160 0 0 0 0 0 0 0 0 0 0 0 0 901980 492550 409430 935730 463000 472730 39445 136 41422 209241;209242 212662 212662 1 YMVSGTNVYGILR SFSRKLPFPDETHERYMVSGTNVYGILRAP ERYMVSGTNVYGILRAPRAASTESLVLTVP R Y M L R A 0 1 1 0 0 0 0 2 0 1 1 0 1 0 0 1 1 0 2 2 0 0 13 0 1471.7493 E9PLV6;E9PPZ9;O43292 E9PLV6 122 134 GPAA1 Glycosylphosphatidylinositol anchor attachment 1 protein yes no 2 4.0126E-05 103.7 By MS/MS 1 1.1233 1.095 NaN 1 Median 1.1233 1.095 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15503000 6637100 8866300 15503000 6637100 8866300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39446 964 41423 209243 212663 212663 1 YMVYPQTFALNADR VDEKLRILTKMQFMKYMVYPQTFALNADRW KYMVYPQTFALNADRWYQYFTKTVFLSGLP K Y M D R W 2 1 1 1 0 1 0 0 0 0 1 0 1 1 1 0 1 0 2 1 0 0 14 0 1687.8028 Q9NP92 Q9NP92 91 104 MRPS30 28S ribosomal protein S30, mitochondrial yes yes 2 0.037674 25.437 By MS/MS 1 0.90865 0.90454 NaN 1 Median 0.90865 0.90454 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1890500 1011500 878950 1890500 1011500 878950 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39447 4043 41424 209244 212664;212665 212665 2 YMWDSQSGR KLFGYEMAEFKVTIKYMWDSQSGRFQQMGD FKVTIKYMWDSQSGRFQQMGDDLPESASES K Y M G R F 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 2 0 1 1 0 0 0 9 0 1128.4658 Q9UKD2 Q9UKD2 206 214 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.00069823 103.83 By matching By matching By MS/MS By matching 1 1 2 3 1.2806 1.1852 12.314 7 Median 1.469 1.4063 NaN 1 0 Median 1.393 1.1866 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1769 1.1905 0.6262 2 0 Median 1.2806 1.0105 2.0917 3 0 Median 27067000 12047000 15020000 3374900 1553300 1821500 1020900 431550 589340 0 0 0 0 0 0 19495000 8581100 10914000 3176800 1480900 1695900 39448 4308 41425 209245;209246;209247;209248;209249;209250;209251 212666;212667 212667 2 YNACILEYK PKGESKDLLFILTAKYNACILEYKQSGESI FILTAKYNACILEYKQSGESIDIITRAHGN K Y N Y K Q 1 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 9 0 1172.5536 Q16531;F5GY55;F5H2L3;F5GWI0;F5GZY8;F5GYG8 Q16531 84 92 DDB1 DNA damage-binding protein 1 yes no 2 0.013806 59.245 By MS/MS 1 0.67949 0.73464 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67949 0.73464 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3811900 2016900 1795000 0 0 0 0 0 0 3811900 2016900 1795000 0 0 0 0 0 0 0 0 0 39449 2985 41426 209252 212668 212668 1 YNADYDLSAR ISVPHKIITHLRKEKYNADYDLSARQGADT LRKEKYNADYDLSARQGADTLAFMSLLEEK K Y N A R Q 2 1 1 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 10 0 1186.5255 Q13505 Q13505 228 237 MTX1 Metaxin-1 yes yes 2 0.0006381 96.331 By MS/MS By MS/MS By MS/MS 1 1 1 0.92674 0.77583 22.954 3 Median 0.76344 0.72142 NaN 1 0 Median 1.3276 1.1078 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92674 0.77583 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10677000 4486400 6190400 5196900 2004200 3192600 4349000 1894800 2454200 0 0 0 1130900 587400 543530 0 0 0 0 0 0 39450 2821 41427 209253;209254;209255 212669;212670;212671 212670 3 YNALLAVQK QLVMNHMHHEDQQVRYNALLAVQKLMVHNW EDQQVRYNALLAVQKLMVHNWEYLGKQLQS R Y N Q K L 2 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1018.5811 Q9UI12;G3V126 Q9UI12 450 458 ATP6V1H V-type proton ATPase subunit H yes no 2 0.0037133 63.21 By MS/MS 1 1.1405 1.0781 NaN 1 Median 1.1405 1.0781 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4745700 2132200 2613500 4745700 2132200 2613500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39451 4287 41428 209256 212672 212672 1 YNAPTSHVTPSVK SSNTTKKPEPPVNLKYNAPTSHVTPSVKKR LKYNAPTSHVTPSVKKRSSTLSQLPGDKSK K Y N V K K 1 0 1 0 0 0 0 0 1 0 0 1 0 0 2 2 2 0 1 2 0 0 13 0 1399.7096 A0A087X2D8;O60271 A0A087X2D8 569 581 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 yes no 2;3 1.5328E-05 87.001 By MS/MS By MS/MS 4 4 0.95935 0.83917 27.199 7 Median 0.98451 0.97757 32.736 4 0 Median 0.92761 0.82082 5.1161 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26830000 14270000 12560000 11549000 5749700 5799300 15281000 8520100 6761000 0 0 0 0 0 0 0 0 0 0 0 0 39452 134 41429 209257;209258;209259;209260;209261;209262;209263;209264 212673;212674;212675;212676;212677;212678 212678 6 YNDKHIPGSPFTAK TYLPTLPGDYSILVKYNDKHIPGSPFTAKI KYNDKHIPGSPFTAKITDDSRRCSQVKLGS K Y N A K I 1 0 1 1 0 0 0 1 1 1 0 2 0 1 2 1 1 0 1 0 0 0 14 1 1573.7889 O75369;E7EN95 O75369 1894 1907 FLNB Filamin-B yes no 2;3 0.00032034 52.527 By MS/MS By MS/MS 3 1 0.68284 0.69838 9.9808 4 Median 0.74721 0.72109 3.8178 3 0 Plateau NaN NaN NaN 0 0 Median 0.50555 0.58473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30989000 17729000 13260000 21995000 12288000 9707800 0 0 0 8993300 5441200 3552100 0 0 0 0 0 0 0 0 0 39453 1664 41430 209265;209266;209267;209268 212679;212680;212681;212682;212683 212680 5 YNDPIYVK RPEILKQEIKVFFVKYNDPIYVKLEKLDIM IKVFFVKYNDPIYVKLEKLDIMIRLASQAN K Y N V K L 0 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 2 1 0 0 8 0 1010.5073 Q10567;C9J1E7;A0A087X253;P63010;A0A087WYD1;A0A087WU93;A0A087WZQ6 A0A087X253 290 297 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta no no 2 0.031031 38.792 By matching By MS/MS By MS/MS 1 2 1 0.86872 0.88353 78.581 4 Median 0.87248 0.86268 NaN 1 0 Median 0.4535 0.41324 110.84 2 0 Median 0.86497 0.95456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 20367000 12232000 8134400 3175600 1598500 1577100 12222000 8145000 4077100 4969200 2489000 2480100 0 0 0 0 0 0 0 0 0 39454 128;2752 41431 209269;209270;209271;209272 212684;212685 212685 2 YNEAQVDFR QHSVLSRKFVEVMTKYNEAQVDFRERSKGR VEVMTKYNEAQVDFRERSKGRIQRQLEITG K Y N F R E 1 1 1 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 9 0 1140.52 A0A0C4DGE4;A0A286YF28;A0A0J9YW33;Q13277 A0A0C4DGE4 86 94 STX3 Syntaxin-3 yes no 2 0.00043878 109.71 By MS/MS 1 1.306 1.0862 NaN 1 Median NaN NaN NaN 0 0 Median 1.306 1.0862 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6992000 2778900 4213100 0 0 0 6992000 2778900 4213100 0 0 0 0 0 0 0 0 0 0 0 0 39455 243 41432 209273 212686 212686 1 YNELSYK RVLDYRRKFIEAAQRYNELSYKTIVHESER KFIEAAQRYNELSYKTIVHESERLEALKHA R Y N Y K T 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 2 0 0 0 7 0 915.4338 D6RAX7;Q9BT78;D6RFN0;D6RD63 D6RAX7 208 214 COPS4 COP9 signalosome complex subunit 4 yes no 2 0.022964 57.281 By matching By MS/MS By matching 1 1 1 1.3828 1.194 15.382 3 Median 1.22 1.194 NaN 1 0 Median 1.3828 1.1924 NaN 1 0 Median 1.3959 1.5575 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4496400 1923000 2573500 1025300 454970 570340 2217000 892240 1324800 1254100 575760 678340 0 0 0 0 0 0 0 0 0 39456 813 41433 209274;209275;209276 212687 212687 1 YNEQHVPGSPFTAR SYLPVLPGDYSILVKYNEQHVPGSPFTARV KYNEQHVPGSPFTARVTGDDSMRMSHLKVG K Y N A R V 1 1 1 0 0 1 1 1 1 0 0 0 0 1 2 1 1 0 1 1 0 0 14 0 1601.7587 P21333;Q60FE5;A0A087WWY3 P21333 1938 1951 FLNA Filamin-A no no 2;3 1.1031E-06 128.85 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 4 5 2 3 0.77119 0.71781 22.229 23 Median 0.84536 0.807 5.2256 6 1 Median 0.72126 0.5931 2.4565 5 1 Median 0.70583 0.7716 15.565 4 1 Median 0.7709 0.6825 8.0627 4 0 Median 1.248 1.277 NaN 1 0 Median 0.89223 0.74023 37.647 3 0 Median 1413900000 785190000 628710000 406040000 217890000 188150000 861350000 487510000 373840000 87855000 50094000 37761000 34671000 18553000 16118000 16638000 7234600 9402900 7341400 3908400 3433000 39457 2088;3120 41434 209277;209278;209279;209280;209281;209282;209283;209284;209285;209286;209287;209288;209289;209290;209291;209292;209293;209294;209295;209296;209297;209298;209299;209300;209301 212688;212689;212690;212691;212692;212693;212694;212695;212696;212697;212698;212699;212700;212701;212702;212703;212704;212705;212706;212707;212708;212709;212710;212711;212712;212713;212714;212715;212716;212717;212718;212719;212720;212721;212722;212723;212724;212725;212726;212727;212728;212729;212730;212731;212732;212733;212734;212735;212736 212716 49 YNFFCQGTR LYMFCELVTGVWEGKYNFFCQGTRTAGESD GVWEGKYNFFCQGTRTAGESDMKIIRVLWW K Y N T R T 0 1 1 0 1 1 0 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 9 0 1191.5131 A0A0A0MTI6;Q9NYP7 A0A0A0MTI6 92 100 ELOVL5 Elongation of very long chain fatty acids protein;Elongation of very long chain fatty acids protein 5 yes no 2 0.012407 46.39 By MS/MS 1 1.4401 1.2215 NaN 1 Median NaN NaN NaN 0 0 Median 1.4401 1.2215 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3907900 1707300 2200600 0 0 0 3907900 1707300 2200600 0 0 0 0 0 0 0 0 0 0 0 0 39458 194 41435 209302 212737;212738 212738 2 YNFLPEALDFVGVHQER RLSMSLMEQLLKTLRYNFLPEALDFVGVHQ FLPEALDFVGVHQERTLQCLNAVRTVQSLA R Y N E R T 1 1 1 1 0 1 2 1 1 0 2 0 0 2 1 0 0 0 1 2 0 0 17 0 2033.0007 Q5SRE5 Q5SRE5 1413 1429 NUP188 Nucleoporin NUP188 homolog yes yes 3 0.0009619 33.307 By matching By MS/MS 1 2 0.90234 0.84922 13.593 3 Plateau NaN NaN NaN 0 0 Median 0.89378 0.76567 NaN 1 0 Median 0.8458 0.92267 11.73 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2914500 1481700 1432800 0 0 0 876330 473420 402910 2038100 1008200 1029900 0 0 0 0 0 0 0 0 0 39459 3074 41436 209303;209304;209305 212739;212740;212741 212740 3 YNFPNPNPFVEDDMDKNEIASVAYR NHNFSQQCLRMGKERYNFPNPNPFVEDDMD EDDMDKNEIASVAYRYRRWKLGDDIDLIVR R Y N Y R Y 2 1 4 3 0 0 2 0 0 1 0 1 1 2 3 1 0 0 2 2 0 0 25 1 2944.3338 O15371 O15371 335 359 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 3 9.5214E-07 50.029 By MS/MS By matching By MS/MS 1 1 1 0.6582 0.70584 9.7831 3 Median 0.6083 0.61011 NaN 1 1 Median 0.75845 0.70584 NaN 1 0 Median 0.6582 0.73477 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15892000 10697000 5194600 11896000 8572500 3323300 367030 199010 168020 3629300 1926000 1703300 0 0 0 0 0 0 0 0 0 39460 1540 41437 209306;209307;209308 212742;212743;212744 212742 3 YNFPVEVEVPMER KNLLIFENLIDLKRRYNFPVEVEVPMERKK RRYNFPVEVEVPMERKKKYIEIRKEAREAA R Y N E R K 0 1 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 3 0 0 13 0 1607.7654 P78527 P78527 1988 2000 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 9.7133E-07 99.568 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 4 3 1 0.86036 0.79877 18.233 14 Median 0.84392 0.79342 11.931 3 0 Median 1.0816 0.93139 24.946 3 0 Median 0.67281 0.70345 6.6554 4 0 Median 1.0962 0.95376 4.3307 3 0 Median 0.7154 0.73574 NaN 1 0 Median NaN NaN NaN 0 0 Median 243600000 139490000 104110000 115410000 65432000 49975000 11493000 5670600 5822600 103860000 61558000 42300000 2746700 1247400 1499300 10099000 5586600 4512700 0 0 0 39461 2647 41438;41439 209309;209310;209311;209312;209313;209314;209315;209316;209317;209318;209319;209320;209321;209322 212745;212746;212747;212748;212749;212750;212751;212752;212753;212754;212755;212756;212757;212758;212759;212760;212761;212762;212763;212764;212765;212766;212767;212768;212769;212770;212771 212759 1335 27 YNGEPEHIER LTPLILKPFGNSISRYNGEPEHIERNDAPH NSISRYNGEPEHIERNDAPHKNTQEKFSLS R Y N E R N 0 1 1 0 0 0 3 1 1 1 0 0 0 0 1 0 0 0 1 0 0 0 10 0 1242.5629 Q14739;A0A494C1L1;C9JXK0 Q14739 132 141 LBR Lamin-B receptor yes no 3 0.032185 21.671 By MS/MS By MS/MS By MS/MS 1 2 2 1.119 0.9408 38.396 5 Median 1.7333 1.7046 NaN 1 0 Median 1.0685 0.92268 2.7513 2 0 Median 1.0069 1.0853 57.936 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3642800 1672700 1970100 388460 151490 236970 2085500 924970 1160500 1168900 596280 572620 0 0 0 0 0 0 0 0 0 39462 2897 41440 209323;209324;209325;209326;209327 212772;212773;212774;212775 212775 4 YNGLIHR YSTEPNNLKARNSFRYNGLIHRKTVGVEPA LKARNSFRYNGLIHRKTVGVEPAADGKGVV R Y N H R K 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 871.46644 H0YMF4;H0YKD8;P46779;H0YLP6 H0YMF4 40 46 RPL28 60S ribosomal protein L28 yes no 2 0.0065536 92.692 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1725 1.0884 9.6999 4 Median 1.0825 1.0648 NaN 1 0 Median 1.1767 0.97495 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1682 1.2312 NaN 1 0 Median 1.4161 1.1126 NaN 1 0 Median 25139000 11600000 13538000 6234600 3027200 3207400 18082000 8225400 9856300 0 0 0 0 0 0 399820 182190 217630 422450 165660 256790 39463 1191 41441 209328;209329;209330;209331 212776;212777;212778 212778 3 YNHIDESEMK HYAKIAADFRNKDEKYNHIDESEMKKVEKS NKDEKYNHIDESEMKKVEKSVNEVMEWMNN K Y N M K K 0 0 1 1 0 0 2 0 1 1 0 1 1 0 0 1 0 0 1 0 0 0 10 0 1264.5394 Q92598;A0A0A0MSM0;Q5TBM3 Q92598 740 749 HSPH1 Heat shock protein 105 kDa yes no 2 0.00063896 98.048 By MS/MS 2 0.82942 0.72627 3.462 2 Median NaN NaN NaN 0 0 Median 0.82942 0.72627 3.462 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5246600 2754300 2492200 0 0 0 5246600 2754300 2492200 0 0 0 0 0 0 0 0 0 0 0 0 39464 3541 41442 209332;209333 212779;212780;212781 212779 3 YNHINAKDDLPGVYQK DQLLAWQGLANLYEKYNHINAKDDLPGVYQ NHINAKDDLPGVYQKLLDLYESVDKQKWCD K Y N Q K L 1 0 2 2 0 1 0 1 1 1 1 2 0 0 1 0 0 0 2 1 0 0 16 1 1873.9323 Q6PGP7;D6RCE2 Q6PGP7 87 102 TTC37 Tetratricopeptide repeat protein 37 yes no 3 0.001168 35.35 By MS/MS 1 0.68577 0.67049 NaN 1 Median 0.68577 0.67049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6746400 3780900 2965500 6746400 3780900 2965500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39465 3169 41443 209334 212782 212782 1 YNHLVYSQIPAAVK IVIRQISDLMGLIPKYNHLVYSQIPAAVKL KYNHLVYSQIPAAVKLTYQDAVNLQNYVEE K Y N V K L 2 0 1 0 0 1 0 0 1 1 1 1 0 0 1 1 0 0 2 2 0 0 14 0 1601.8566 O95071;E7EMW7 O95071 1805 1818 UBR5 E3 ubiquitin-protein ligase UBR5 yes no 3 0.00023821 65.295 By MS/MS 1 0.88242 0.88356 NaN 1 Median 0.88242 0.88356 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10389000 6490600 3898400 10389000 6490600 3898400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39466 1744 41444 209335 212783 212783 1 YNHMLSATVK TREAITHLLGVALTRYNHMLSATVKIIQML VALTRYNHMLSATVKIIQMLQHFEHLAPVL R Y N V K I 1 0 1 0 0 0 0 0 1 0 1 1 1 0 0 1 1 0 1 1 0 0 10 0 1162.5805 Q15021;E7EN77 Q15021 234 243 NCAPD2 Condensin complex subunit 1 yes no 2 0.025636 49.715 By MS/MS 1 1.4874 1.2909 NaN 1 Median NaN NaN NaN 0 0 Median 1.4874 1.2909 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3172300 1444400 1728000 0 0 0 3172300 1444400 1728000 0 0 0 0 0 0 0 0 0 0 0 0 39467 2915 41445 209336 212784 212784 1 YNHPQGFFSHR CLRLFRGPSRMKPFKYNHPQGFFSHR____ KPFKYNHPQGFFSHR_______________ K Y N H R - 0 1 1 0 0 1 0 1 2 0 0 0 0 2 1 1 0 0 1 0 0 0 11 0 1388.6374 Q13769 Q13769 673 683 THOC5 THO complex subunit 5 homolog yes yes 2;3 4.1501E-05 82.803 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.97529 0.84057 20.32 5 Median NaN NaN NaN 0 0 Median 1.4162 1.2828 NaN 1 0 Median 0.80716 0.81885 NaN 1 0 Median 1.0591 0.91272 11.646 2 1 Median NaN NaN NaN 0 0 Median 0.9496 0.7791 NaN 1 0 Median 29434000 14977000 14456000 0 0 0 907490 413790 493700 16435000 8892100 7543000 11367000 5356900 6009800 0 0 0 724450 314620 409830 39468 2837 41446 209337;209338;209339;209340;209341 212785;212786;212787;212788 212785 4 YNHSHDQLVLTGSSDSR VKTLEEHSHWVWNVRYNHSHDQLVLTGSSD HSHDQLVLTGSSDSRVILSNMVSISSEPFG R Y N S R V 0 1 1 2 0 1 0 1 2 0 2 0 0 0 0 4 1 0 1 1 0 0 17 0 1914.882 A8MUM1;Q53HC9;C9JVR6 A8MUM1 307 323 TSSC1 Protein TSSC1 yes no 3 0.0005047 36.593 By MS/MS 1 1.2539 1.2331 NaN 1 Median 1.2539 1.2331 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4835500 2210300 2625300 4835500 2210300 2625300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39469 543 41447 209342 212789;212790 212789 2 YNIEKDIAAHIK MQQDSVECATQALEKYNIEKDIAAHIKKEF LEKYNIEKDIAAHIKKEFDKKYNPTWHCIV K Y N I K K 2 0 1 1 0 0 1 0 1 3 0 2 0 0 0 0 0 0 1 0 0 0 12 1 1413.7616 P63167;F8VXL2;F8VRV5 P63167 32 43 DYNLL1 Dynein light chain 1, cytoplasmic yes no 2;3 8.2443E-05 97.456 By MS/MS By MS/MS By MS/MS 1 2 2 0.99243 0.92938 33.088 5 Median 0.99243 0.92938 NaN 1 0 Median 1.0119 0.87722 24.365 2 0 Median 1.2693 1.2759 47.413 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 124660000 61899000 62763000 18619000 8774900 9844400 32606000 15379000 17227000 73437000 37745000 35692000 0 0 0 0 0 0 0 0 0 39470 2620 41448 209343;209344;209345;209346;209347 212791;212792;212793;212794;212795;212796;212797;212798 212798 8 YNIEKDIAAHIKK MQQDSVECATQALEKYNIEKDIAAHIKKEF EKYNIEKDIAAHIKKEFDKKYNPTWHCIVG K Y N K K E 2 0 1 1 0 0 1 0 1 3 0 3 0 0 0 0 0 0 1 0 0 0 13 2 1541.8566 P63167;F8VXL2;F8VRV5 P63167 32 44 DYNLL1 Dynein light chain 1, cytoplasmic yes no 3 0.00012852 74.537 By MS/MS By MS/MS By MS/MS 1 1 1 0.95796 0.95482 14.71 3 Plateau 0.79286 0.8008 NaN 1 0 Median 1.076 0.85844 NaN 1 0 Median 0.95796 1.062 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 47689000 22985000 24703000 10445000 5190700 5254000 17488000 8319300 9168200 19757000 9475500 10281000 0 0 0 0 0 0 0 0 0 39471 2620 41449 209348;209349;209350 212799;212800;212801;212802;212803;212804 212803 6 YNIEKDIAAYIK MQQDAVDCATQAMEKYNIEKDIAAYIKKEF MEKYNIEKDIAAYIKKEFDKKYNPTWHCIV K Y N I K K 2 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 0 2 0 0 0 12 1 1439.766 Q96FJ2 Q96FJ2 32 43 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 3 0.029694 22.232 By matching By MS/MS 1 1 1.022 0.99645 8.2873 2 Median 1.0035 0.93973 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0408 1.0566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8214100 4021500 4192600 1098800 561600 537230 0 0 0 7115300 3459900 3655300 0 0 0 0 0 0 0 0 0 39472 3649 41450 209351;209352 212805;212806 212806 2 YNIEKDIAAYIKK MQQDAVDCATQAMEKYNIEKDIAAYIKKEF EKYNIEKDIAAYIKKEFDKKYNPTWHCIVG K Y N K K E 2 0 1 1 0 0 1 0 0 3 0 3 0 0 0 0 0 0 2 0 0 0 13 2 1567.861 Q96FJ2 Q96FJ2 32 44 DYNLL2 Dynein light chain 2, cytoplasmic yes yes 3 5.5239E-05 82.543 By MS/MS By MS/MS 1 1 1.1111 1.1757 3.3869 2 Median 1.1365 1.1479 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0862 1.2042 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13918000 6800400 7118000 4492800 2131100 2361700 0 0 0 9425600 4669300 4756300 0 0 0 0 0 0 0 0 0 39473 3649 41451 209353;209354 212807;212808 212808 2 YNILGTNAIMDK TTWAIKHAASNPSKKYNILGTNAIMDKMRV SKKYNILGTNAIMDKMRVMGLRRQRNYAGR K Y N D K M 1 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 0 1351.6806 Q9BUJ2;A0A0A0MRA5;B7Z4B8;M0R3F1;M0QYZ0 Q9BUJ2 450 461 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes no 2 0.00062355 66.056 By MS/MS By matching By MS/MS By matching By MS/MS By matching 1 1 2 1 4 2 0.87195 0.91289 36.242 11 Median 0.95887 0.93153 NaN 1 0 Median 1.5467 1.3717 NaN 1 0 Median 0.58328 0.64257 35.394 2 0 Median 1.1525 1.0112 NaN 1 0 Median 0.78187 0.79929 35.929 4 0 Median 1.4107 1.1898 2.2925 2 0 Median 51805000 28326000 23479000 7119200 3373000 3746300 610370 239030 371340 8096100 4578300 3517800 405180 121930 283250 34409000 19545000 14864000 1165400 469130 696270 39474 3840 41452;41453 209355;209356;209357;209358;209359;209360;209361;209362;209363;209364;209365 212809;212810;212811;212812;212813;212814;212815;212816;212817 212809 1837 9 YNILGTNTIMDK KTTWVTKHAAENPGKYNILGTNTIMDKMMV PGKYNILGTNTIMDKMMVAGFKKQMADTGK K Y N D K M 0 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 2 0 1 0 0 0 12 0 1381.6912 Q00839;A0A1X7SBS1;A0A1W2PPS1;Q5RI18;A0A1W2PP35;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQL0;A0A1W2PP34;A0A1W2PQ74;A0A1W2PRZ7;A0A1W2PQD4 Q00839 525 536 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes no 2 1.4426E-10 133.23 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 6 9 7 8 8 1.1569 1.0783 18.709 41 Median 1.0356 0.99507 48.782 4 0 Median 1.2567 1.0594 11.937 6 0 Median 1.0518 1.099 15.283 9 1 Median 1.2787 1.1269 7.6925 7 0 Median 1.1025 1.0999 15.515 7 0 Median 1.2584 1.0465 9.8065 8 0 Median 1158000000 542480000 615520000 92969000 43315000 49655000 66255000 28856000 37399000 373250000 178200000 195050000 49337000 21385000 27952000 532900000 251830000 281070000 43286000 18894000 24392000 39475 2680 41454;41455 209366;209367;209368;209369;209370;209371;209372;209373;209374;209375;209376;209377;209378;209379;209380;209381;209382;209383;209384;209385;209386;209387;209388;209389;209390;209391;209392;209393;209394;209395;209396;209397;209398;209399;209400;209401;209402;209403;209404;209405;209406;209407 212818;212819;212820;212821;212822;212823;212824;212825;212826;212827;212828;212829;212830;212831;212832;212833;212834;212835;212836;212837;212838;212839;212840;212841;212842;212843;212844;212845;212846;212847;212848;212849;212850;212851;212852;212853;212854;212855;212856;212857;212858 212845 1355 41 YNIMLVR TGGKVADMALHYANKYNIMLVRLNSKWDLR MALHYANKYNIMLVRLNSKWDLRRLCKTVG K Y N V R L 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 7 0 907.49496 P50990;H7C4C8 P50990 308 314 CCT8 T-complex protein 1 subunit theta yes no 2 0.0027357 118.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 2 2 1 1 1.3204 1.2304 16.365 12 Median 1.3151 1.2585 5.4988 4 0 Median 1.3277 1.1179 1.4804 2 0 Median 1.1269 1.1528 23.662 2 1 Median 1.3197 1.1406 1.014 2 0 Median 1.8799 1.8912 NaN 1 1 Median 1.494 1.2941 NaN 1 0 Median 90639000 39365000 51274000 46972000 18804000 28168000 20408000 8425300 11983000 18661000 10432000 8229200 2020900 827860 1193000 2045200 666070 1379100 531490 209540 321950 39476 2423 41456;41457 209408;209409;209410;209411;209412;209413;209414;209415;209416;209417;209418;209419 212859;212860;212861;212862;212863;212864;212865;212866;212867 212862 1129 9 YNIPHGPVVGSTR YADLSDTELTTLLRRYNIPHGPVVGSTRRL RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R Y N T R R 0 1 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 13 0 1395.7259 P50402 P50402 19 31 EMD Emerin yes yes 2;3 0.00015153 76.282 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 5 2 0.86444 0.82168 13.278 10 Median 0.69766 0.65241 NaN 1 1 Median 0.78785 0.65815 NaN 1 0 Median 0.90032 0.89094 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84373 0.85151 6.8759 5 2 Median 0.90627 0.73921 3.9199 2 0 Median 99854000 54877000 44977000 27644000 15244000 12400000 3721600 1962800 1758900 4473300 2653500 1819700 0 0 0 59407000 32670000 26737000 4608600 2347000 2261600 39477 2412 41458 209420;209421;209422;209423;209424;209425;209426;209427;209428;209429;209430 212868;212869;212870;212871;212872;212873;212874;212875;212876;212877;212878;212879 212875 12 YNIPHGPVVGSTRR YADLSDTELTTLLRRYNIPHGPVVGSTRRL RYNIPHGPVVGSTRRLYEKKIFEYETQRRR R Y N R R L 0 2 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 14 1 1551.827 P50402 P50402 19 32 EMD Emerin yes yes 2;3 0.054103 25.217 By MS/MS By MS/MS By matching 1 2 1 0.81831 0.87936 10.745 4 Median 0.66925 0.72049 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81831 0.88042 3.8884 2 0 Median 1.0265 0.90278 NaN 1 0 Median 30001000 16628000 13372000 5690200 3245100 2445100 0 0 0 0 0 0 0 0 0 22374000 12312000 10061000 1936900 1071000 865910 39478 2412 41459 209431;209432;209433;209434 212880;212881 212881 2 YNLAVVWLR NSALPLLSALVCSERYNLAVVWLRHAECLK LVCSERYNLAVVWLRHAECLKALGYMERAA R Y N L R H 1 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 2 0 0 9 0 1132.6393 Q9Y5Q9;A0A494C1S7;H7C143 Q9Y5Q9 453 461 GTF3C3 General transcription factor 3C polypeptide 3 yes no 2 0.006443 54.549 By matching By MS/MS 1 1 0.70562 0.6853 0.77237 2 Median NaN NaN NaN 0 0 Median 0.7801 0.68905 NaN 1 0 Median 0.63826 0.68157 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3412100 1934200 1478000 0 0 0 1305700 767460 538240 2106400 1166700 939730 0 0 0 0 0 0 0 0 0 39479 4467 41460 209435;209436 212882;212883 212883 2 YNLGLDLR TMERSARQIMRTAMKYNLGLDLRTAAYVNA IMRTAMKYNLGLDLRTAAYVNAIEKVFKVY K Y N L R T 0 1 1 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 8 0 962.51853 P00367;P49448 P00367 528 535 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.0033382 98.997 By MS/MS By MS/MS By matching 4 1 1 1.0416 1.0677 31.003 6 Median 1.0379 1.0136 11.599 4 0 Median NaN NaN NaN 0 0 Median 1.0261 1.0644 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.1024 2.1144 NaN 1 0 Median NaN NaN NaN 0 0 Median 39476000 18877000 20599000 34507000 16591000 17915000 0 0 0 4154600 2010600 2144100 0 0 0 815000 275030 539970 0 0 0 39480 1814 41461 209437;209438;209439;209440;209441;209442 212884;212885;212886;212887;212888 212888 5 YNLIVVGR HFQHLTPIKAAWHPRYNLIVVGRYPDPNFK KAAWHPRYNLIVVGRYPDPNFKSCTPYELR R Y N G R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 2 0 0 8 0 932.54435 Q92466 Q92466 348 355 DDB2 DNA damage-binding protein 2 yes yes 2 0.0026056 128.38 By matching By matching By MS/MS By MS/MS 1 1 5 2 1.0411 1.0548 27.377 9 Median 1.0411 1.0548 NaN 1 0 Median 1.7261 1.4797 NaN 1 0 Median 0.84815 0.88074 23.51 5 0 Median 1.6945 1.464 16.535 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 96915000 49313000 47602000 2286200 1026600 1259600 2072100 791320 1280800 78734000 42871000 35863000 13823000 4624000 9199000 0 0 0 0 0 0 39481 3527 41462 209443;209444;209445;209446;209447;209448;209449;209450;209451 212889;212890;212891;212892;212893;212894;212895;212896;212897 212892 9 YNLKPIPLKR VPVKKNASTVVVSDKYNLKPIPLKRQSNVA VVSDKYNLKPIPLKRQSNVAAPGDATPPAE K Y N K R Q 0 1 1 0 0 0 0 0 0 1 2 2 0 0 2 0 0 0 1 0 0 0 10 2 1240.7656 Q96QC0 Q96QC0 236 245 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 0.00012035 81.95 By MS/MS By MS/MS 1 2 0.81199 0.92229 12.119 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60118 0.74894 NaN 1 0 Median 0.83704 0.92384 0.23842 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6629500 3508900 3120600 0 0 0 0 0 0 3426600 1738200 1688400 3202900 1770700 1432200 0 0 0 0 0 0 39482 3718 41463 209452;209453;209454 212898;212899;212900 212900 3 YNLTSDIIESIFR LADVRPQTDGCNGLRYNLTSDIIESIFRTY LRYNLTSDIIESIFRTYPAVKMKYAENVPH R Y N F R T 0 1 1 1 0 0 1 0 0 3 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1569.8039 P32780 P32780 186 198 GTF2H1 General transcription factor IIH subunit 1 yes yes 2 0.002783 46.606 By MS/MS 1 0.91182 0.95774 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91182 0.95774 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2405700 1281000 1124700 0 0 0 0 0 0 2405700 1281000 1124700 0 0 0 0 0 0 0 0 0 39483 2219 41464 209455 212901 212901 1 YNMGLPVDFDQYNELHLPAVILK RRSANTQVVREVQQKYNMGLPVDFDQYNEL FDQYNELHLPAVILKTFLRELPEPLLTFDL K Y N L K T 1 0 2 2 0 1 1 1 1 1 4 1 1 1 2 0 0 0 2 2 0 0 23 0 2688.3622 Q07960;H0YE29 Q07960 297 319 ARHGAP1 Rho GTPase-activating protein 1 yes no 3 0.0053841 27.32 By MS/MS 1 0.73846 0.62605 NaN 1 Median NaN NaN NaN 0 0 Median 0.73846 0.62605 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10487000 5273700 5212900 0 0 0 10487000 5273700 5212900 0 0 0 0 0 0 0 0 0 0 0 0 39484 2734 41465 209456 212902 212902 1 YNNPAMLHNIDQEMLK NQKDGMVSFHDNPEKYNNPAMLHNIDQEML NNPAMLHNIDQEMLKCIELDERLKAMDQEI K Y N L K C 1 0 3 1 0 1 1 0 1 1 2 1 2 0 1 0 0 0 1 0 0 0 16 0 1929.9077 Q9UNS2;H7C3P9 Q9UNS2 367 382 COPS3 COP9 signalosome complex subunit 3 yes no 2;3 2.0172E-06 87.184 By MS/MS By matching By MS/MS By MS/MS 4 1 3 1 0.90584 0.83576 130.79 7 Median 0.90584 0.83576 132.98 3 1 Plateau 1.0401 0.89221 NaN 1 0 Median 0.92552 0.98182 1.5535 2 0 Median NaN NaN NaN 0 0 Median 0.046274 0.048498 NaN 1 1 Median NaN NaN NaN 0 0 Median 141610000 110290000 31317000 57171000 41992000 15180000 1537700 788120 749590 50802000 36332000 14470000 0 0 0 32095000 31176000 918540 0 0 0 39485 4350 41466;41467 209457;209458;209459;209460;209461;209462;209463;209464;209465 212903;212904;212905;212906;212907;212908;212909;212910;212911;212912;212913 212909 1930;1931 11 YNNQLATR AEIVSKYDPNVYSIKYNNQLATRTAQAIFD PNVYSIKYNNQLATRTAQAIFDDSYLGYSV K Y N T R T 1 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 8 0 978.48829 P06756 P06756 234 241 ITGAV Integrin alpha-V;Integrin alpha-V heavy chain;Integrin alpha-V light chain yes yes 2 0.053945 50.607 By MS/MS 1 0.82212 0.7257 NaN 1 Median NaN NaN NaN 0 0 Median 0.82212 0.7257 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 901230 427890 473340 0 0 0 901230 427890 473340 0 0 0 0 0 0 0 0 0 0 0 0 39486 1878 41468 209466 212914 212914 1 YNNSTGISYETLGPEELR LKHKNGELSNSDPFKYNNSTGISYETLGPE STGISYETLGPEELRSLLTTLIFLFQQCGV K Y N L R S 0 1 2 0 0 0 3 2 0 1 2 0 0 0 1 2 2 0 2 0 0 0 18 0 2041.9593 K7ENU1;Q14CW9;K7EKG9 K7ENU1 18 35 ATXN7L3 Ataxin-7-like protein 3 yes no 2 3.9381E-13 123.64 By matching By MS/MS By matching By matching 1 1 1 1 0.79938 0.77095 13.475 4 Median 0.75451 0.70932 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.84693 0.91761 NaN 1 0 Median 0.98874 0.83794 NaN 1 0 Median 0.70741 0.69288 NaN 1 0 Median NaN NaN NaN 0 0 Median 6880500 3848600 3031900 1128000 535130 592920 0 0 0 4001500 2336800 1664700 165920 85860 80058 1585000 890840 694170 0 0 0 39487 1389 41469 209467;209468;209469;209470 212915;212916 212916 2 YNPENLATLER QMRANVGKLLKGIDRYNPENLATLERYVET GIDRYNPENLATLERYVETQAKENAYDLEA R Y N E R Y 1 1 2 0 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1318.6517 K7ES31;K7ERF1;Q9UBQ5 K7ES31 21 31 EIF3K Eukaryotic translation initiation factor 3 subunit K yes no 2 0.00011548 133.13 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 1 1 2 1.0233 0.91247 70.111 8 Median 1.1662 1.1376 7.6808 2 0 Median 1.0053 0.84172 0.96091 2 0 Median 1.0212 0.98057 NaN 1 0 Median 1.0241 0.8491 NaN 1 0 Median 0.64164 0.6543 176.4 2 1 Median NaN NaN NaN 0 0 Median 146230000 66533000 79693000 72605000 24989000 47617000 19403000 9508400 9894100 33133000 16249000 16884000 3379100 1695800 1683300 17706000 14091000 3615200 0 0 0 39488 1399 41470 209471;209472;209473;209474;209475;209476;209477;209478 212917;212918;212919;212920;212921;212922;212923;212924;212925;212926;212927 212917 11 YNPPDHDVVAMAR EFAADVRLMFSNCYKYNPPDHDVVAMARKL YKYNPPDHDVVAMARKLQDVFEFRYAKMPD K Y N A R K 2 1 1 2 0 0 0 0 1 0 0 0 1 0 2 0 0 0 1 2 0 0 13 0 1483.6878 H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440;U3KQA6;A0A0G2JHL0;A0A140T9F7;A0A140T9V2 H0Y6K2 434 446 BRD2 Bromodomain-containing protein 2 yes no 2;3 6.7738E-05 79.633 By MS/MS By matching By MS/MS By MS/MS 2 1 3 2 0.86196 0.86586 21.12 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8348 0.89025 3.9289 2 1 Median 1.6349 1.4056 NaN 1 0 Median 0.84734 0.85473 7.2654 3 0 Median 0.91116 0.73996 NaN 1 0 Median 47578000 26264000 21314000 0 0 0 0 0 0 12023000 6936300 5086800 775430 393830 381600 32017000 17551000 14467000 2762000 1383500 1378600 39489 279 41471 209479;209480;209481;209482;209483;209484;209485;209486 212928;212929;212930;212931;212932;212933;212934;212935 212934 7 YNPPDHEVVAMAR EFGADVRLMFSNCYKYNPPDHEVVAMARKL YKYNPPDHEVVAMARKLQDVFEMRFAKMPD K Y N A R K 2 1 1 1 0 0 1 0 1 0 0 0 1 0 2 0 0 0 1 2 0 0 13 0 1497.7034 O60885;M0QZD9;Q15059 O60885 432 444 BRD4;BRD3 Bromodomain-containing protein 4;Bromodomain-containing protein 3 no no 2;3 1.0083E-06 98.943 By MS/MS By MS/MS By MS/MS By MS/MS 6 5 2 3 0.60374 0.62538 17.151 16 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57084 0.60208 16.434 6 1 Median 0.76068 0.66912 16.967 5 0 Median 0.52733 0.53718 22.234 2 0 Median 0.80269 0.65056 20.931 3 2 Median 134680000 82012000 52671000 0 0 0 0 0 0 89798000 54770000 35028000 15733000 8910800 6822300 22189000 14336000 7852200 6963000 3993800 2969200 39490 1638;2923 41472 209487;209488;209489;209490;209491;209492;209493;209494;209495;209496;209497;209498;209499;209500;209501;209502 212936;212937;212938;212939;212940;212941;212942;212943;212944;212945;212946;212947;212948;212949;212950;212951;212952;212953;212954;212955;212956;212957 212947 22 YNPTWHCIVGR EKDIAAYIKKEFDKKYNPTWHCIVGRNFGS FDKKYNPTWHCIVGRNFGSYVTHETKHFIY K Y N G R N 0 1 1 0 1 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 0 0 11 0 1401.6612 P63167;Q96FJ2 Q96FJ2 50 60 DYNLL1;DYNLL2 Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic no no 2;3 3.9852E-05 100.02 By MS/MS By MS/MS By MS/MS By matching By matching 2 2 2 2 1 1.0247 0.93939 9.9645 9 Median 1.0177 0.99082 16.471 2 1 Median 1.1568 0.98903 2.2482 2 0 Median 0.82755 0.83696 4.8707 2 0 Median NaN NaN NaN 0 0 Median 0.93109 0.96855 10.046 2 0 Median 1.2102 0.93939 NaN 1 0 Median 194360000 93535000 100830000 13835000 6469800 7364900 133300000 62008000 71292000 45434000 24210000 21224000 0 0 0 1441100 767590 673550 353270 79709 273560 39491 3649;2620 41473 209503;209504;209505;209506;209507;209508;209509;209510;209511 212958;212959;212960;212961;212962;212963;212964;212965;212966;212967;212968;212969 212961 12 YNPYTTRPNR GDVAMSDAQDGPRVRYNPYTTRPNRRGDTW GPRVRYNPYTTRPNRRGDTWHDRDRIHVTV R Y N N R R 0 2 2 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 2 0 0 0 10 1 1280.6262 Q9UBU9;E9PIN3;E9PLA7;E9PMV7 Q9UBU9 72 81 NXF1 Nuclear RNA export factor 1 yes no 3 0.047406 19.243 By matching By MS/MS 1 1 0.65247 0.65685 14.196 2 Median NaN NaN NaN 0 0 Median 0.65416 0.59411 NaN 1 0 Median 0.65077 0.72621 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3411600 1685300 1726400 0 0 0 1403800 672090 731700 2007900 1013200 994670 0 0 0 0 0 0 0 0 0 39492 4249 41474 209512;209513 212970;212971 212970 2 YNQATPNFHQWR DQQVVINCAIVRGVKYNQATPNFHQWRDAR GVKYNQATPNFHQWRDARQVWGLNFGSKED K Y N W R D 1 1 2 0 0 2 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 12 0 1560.7222 P50552 P50552 72 83 VASP Vasodilator-stimulated phosphoprotein yes yes 3 0.00017147 64.224 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.97304 0.89703 19.502 4 Median 0.84508 0.82535 NaN 1 0 Median 1.1204 0.97495 NaN 1 0 Median 0.80535 0.80191 NaN 1 0 Median 1.4206 1.2262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21532000 9583700 11948000 5677000 2739400 2937700 1356300 535860 820410 6933500 3443600 3490000 7565200 2864900 4700300 0 0 0 0 0 0 39493 2416 41475 209514;209515;209516;209517 212972;212973 212973 2 YNQATQTFHQWR DHQVVINCAIPKGLKYNQATQTFHQWRDAR GLKYNQATQTFHQWRDARQVYGLNFGSKED K Y N W R D 1 1 1 0 0 3 0 0 1 0 0 0 0 1 0 0 2 1 1 0 0 0 12 0 1578.7328 A0A0U1RRM6;Q8N8S7;A0A075B6E5;A0A0U1RQP7 A0A0U1RRM6 70 81 ENAH Protein enabled homolog yes no 2;3 3.7465E-15 179.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 2 3 1 1 1.1573 1.1249 22.028 11 Median 1.1891 1.1249 11.48 3 0 Median 1.3343 1.1562 NaN 1 0 Median 1.3892 1.418 12.336 2 1 Median 0.89964 0.77757 14.663 3 0 Median 1.1387 1.1867 NaN 1 0 Median 1.1573 0.94193 NaN 1 1 Median 75905000 33090000 42815000 32287000 14547000 17740000 3262300 1415300 1847000 28785000 11700000 17085000 5092900 2386500 2706400 5363000 2493600 2869400 1115300 548080 567170 39494 313 41476 209518;209519;209520;209521;209522;209523;209524;209525;209526;209527;209528 212974;212975;212976;212977;212978;212979;212980;212981;212982;212983;212984;212985;212986;212987;212988 212981 14 YNQMDSTEDAQEEFGWK VAMIMLRTLHKDIARYNQMDSTEDAQEEFG QMDSTEDAQEEFGWKLVHGDIFRPPRKGML R Y N W K L 1 0 1 2 0 2 3 1 0 0 0 1 1 1 0 1 1 1 1 0 0 0 17 0 2076.8371 Q99805 Q99805 333 349 TM9SF2 Transmembrane 9 superfamily member 2 yes yes 2 1.2319E-10 105.65 By MS/MS By matching 2 1 1.0768 1.0416 2.9531 3 Median 1.0761 1.047 4.1551 2 0 Median 1.1775 1.0416 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13476000 6103500 7372700 12868000 5820300 7048100 607880 283240 324630 0 0 0 0 0 0 0 0 0 0 0 0 39495 3770 41477 209529;209530;209531 212989;212990;212991 212990 3 YNSMPVPGPNGTILMETHK IARESLLRKSQVSIRYNSMPVPGPNGTILM PVPGPNGTILMETHKTVGQQMLSFPHLLQT R Y N H K T 0 0 2 0 0 0 1 2 1 1 1 1 2 0 3 1 2 0 1 1 0 0 19 0 2085.0023 O15431 O15431 103 121 SLC31A1 High affinity copper uptake protein 1 yes yes 3 5.2616E-15 89.049 By MS/MS 1 0.66894 0.67056 NaN 1 Median 0.66894 0.67056 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13381000 8383700 4997100 13381000 8383700 4997100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39496 1547 41478 209532 212992 212992 1 YNSQLLSFVR IKLTHDVELNLDYERYNSQLLSFVRDLNQY LDYERYNSQLLSFVRDLNQYRADIKEMGLS R Y N V R D 0 1 1 0 0 1 0 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 10 0 1225.6455 P02786;G3V0E5;H7C3V5 P02786 614 623 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes no 2 0.00036109 82.749 By MS/MS By matching By matching 3 2 1 1.3435 1.2667 52.153 6 Median 1.4607 1.382 16.957 3 0 Median 0.74791 0.6435 71.696 2 0 Median NaN NaN NaN 0 0 Median 1.6184 1.3463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37001000 15495000 21505000 18954000 7285400 11669000 17857000 8130000 9726900 0 0 0 189400 79939 109460 0 0 0 0 0 0 39497 1836 41479 209533;209534;209535;209536;209537;209538 212993;212994;212995;212996 212995 4 YNSWPSSLQELLRPTFPGVIR SPAISWVNNLEVDSRYNSWPSSLQELLRPT SLQELLRPTFPGVIRQIRKNLHNMVFIVDP R Y N I R Q 0 2 1 0 0 1 1 1 0 1 3 0 0 1 3 3 1 1 1 1 0 0 21 1 2459.2961 Q9NYU2 Q9NYU2 470 490 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 3 0.069838 7.5735 By MS/MS 2 0.77166 0.82522 0 2 Median 0.77166 0.82522 0 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5851500 3156000 2695500 5851500 3156000 2695500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39498 4179 41480 209539;209540 212997 212997 1 YNVEAVELLIR KQITRCLIECRDEYKYNVEAVELLIRNHLV DEYKYNVEAVELLIRNHLVNMQQYDLHLAQ K Y N I R N 1 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 1 2 0 0 11 0 1317.7293 A5YKK6;H3BMZ2 A5YKK6 1723 1733 CNOT1 CCR4-NOT transcription complex subunit 1 yes no 2 0.00014501 84.213 By matching By MS/MS By matching By matching 1 1 1 2 1.0111 0.95982 18.923 5 Median 0.86163 0.86073 NaN 1 0 Median 1.135 0.95982 NaN 1 0 Median 1.0111 1.1198 NaN 1 0 Median 1.2231 1.0629 31.494 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4005100 1932500 2072600 735970 400010 335960 2626800 1206500 1420300 517590 275490 242100 124770 50485 74283 0 0 0 0 0 0 39499 503 41481 209541;209542;209543;209544;209545 212998;212999 212998 2 YNVLGAETVLNQMR TQWALKYAKENPEKRYNVLGAETVLNQMRM RYNVLGAETVLNQMRMKGLEEPEMDPKSRD R Y N M R M 1 1 2 0 0 1 1 1 0 0 2 0 1 0 0 0 1 0 1 2 0 0 14 0 1606.8137 Q1KMD3;H3BQZ7 Q1KMD3 481 494 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes no 2;3 2.9835E-16 182.64 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 2 3 2 2 14 3 0.97967 0.98317 20 26 Median 1.2752 1.251 11.043 2 1 Median 1.3308 1.1396 33.698 3 0 Median 0.94874 1.0107 3.7912 2 0 Median 1.1378 0.97076 7.3292 2 0 Median 0.95928 0.97542 17.057 14 3 Median 0.91964 0.75019 13.894 3 0 Median 251260000 124370000 126890000 4108400 1775200 2333200 3589900 1473800 2116200 14155000 7117600 7037100 2065100 913570 1151600 220250000 109500000 110760000 7087700 3594700 3493000 39500 3002 41482;41483 209546;209547;209548;209549;209550;209551;209552;209553;209554;209555;209556;209557;209558;209559;209560;209561;209562;209563;209564;209565;209566;209567;209568;209569;209570;209571 213000;213001;213002;213003;213004;213005;213006;213007;213008;213009;213010;213011;213012;213013;213014;213015;213016;213017;213018;213019;213020;213021;213022;213023;213024 213005 1645 25 YNVPLNR SEISENTDASGKIEKYNVPLNRLKMMFEKG DASGKIEKYNVPLNRLKMMFEKGEPTQTKI K Y N N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 874.4661 Q9UHB6;F8VQE1;F8VRN8 Q9UHB6 190 196 LIMA1 LIM domain and actin-binding protein 1 yes no 2 0.059199 48.761 By MS/MS 1 1.0085 1.0785 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0085 1.0785 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4374200 1963300 2410800 0 0 0 0 0 0 4374200 1963300 2410800 0 0 0 0 0 0 0 0 0 39501 4273 41484 209572 213025 213025 1 YNVPNSAIYK HLECDLNLMFENAKRYNVPNSAIYKRVLKL ENAKRYNVPNSAIYKRVLKLQQVMQAKKKE R Y N Y K R 1 0 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 10 0 1167.5924 Q86U86;E7EVG2;H0Y5B5 Q86U86 462 471 PBRM1 Protein polybromo-1 yes no 2 0.0026987 59.35 By MS/MS 1 1.2109 1.0923 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2109 1.0923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4302400 1838100 2464200 0 0 0 0 0 0 0 0 0 4302400 1838100 2464200 0 0 0 0 0 0 39502 3273 41485 209573 213026 213026 1 YNVPNSAIYKR HLECDLNLMFENAKRYNVPNSAIYKRVLKL NAKRYNVPNSAIYKRVLKLQQVMQAKKKEL R Y N K R V 1 1 2 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 1 0 0 11 1 1323.6935 Q86U86;E7EVG2;H0Y5B5 Q86U86 462 472 PBRM1 Protein polybromo-1 yes no 2;3 4.2348E-05 93.096 By matching By MS/MS 2 2 0.93291 1.0104 5.9994 3 Plateau 0.93478 0.91418 2.2742 2 0 Median NaN NaN NaN 0 0 Median 0.84296 1.0104 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16839000 9004100 7835100 4988900 2522400 2466500 0 0 0 11850000 6481700 5368600 0 0 0 0 0 0 0 0 0 39503 3273 41486 209574;209575;209576;209577 213027;213028;213029 213027 3 YNVSTTPYLQSVK VKTPNTETRTSCLIKYNVSTTPYLQSVKKK IKYNVSTTPYLQSVKKKVQFDGTNSAFKEL K Y N V K K 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 2 2 0 2 2 0 0 13 0 1498.7668 Q8WWK9 Q8WWK9 592 604 CKAP2 Cytoskeleton-associated protein 2 yes yes 2 0.059321 24.343 By MS/MS 1 1.1626 1.2299 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1626 1.2299 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4829100 2869800 1959300 0 0 0 0 0 0 4829100 2869800 1959300 0 0 0 0 0 0 0 0 0 39504 3510 41487 209578 213030 213030 1 YNVYGYTGQGVFSNVVR EGYYRVNIGEVLDKRYNVYGYTGQGVFSNV VYGYTGQGVFSNVVRARDNARANQEVAVKI R Y N V R A 0 1 2 0 0 1 0 3 0 0 0 0 0 1 0 1 1 0 3 4 0 0 17 0 1921.9323 H0YDJ3;Q13523 H0YDJ3 267 283 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes no 2 1.7895E-05 77.593 By MS/MS By MS/MS By MS/MS 1 1 1 0.92605 0.93426 27.843 3 Median 0.93421 0.93426 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.92605 1.0186 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.57729 0.6058 NaN 1 1 Median NaN NaN NaN 0 0 Median 11164000 6431300 4733000 1437200 671130 766040 0 0 0 5719000 3045600 2673400 0 0 0 4008200 2714600 1293600 0 0 0 39505 1176 41488 209579;209580;209581 213031;213032;213033 213032 3 YNYHLDSSGSYVFENTVATVMALR ELRARGLEVTDDSPKYNYHLDSSGSYVFEN SYVFENTVATVMALRREKMFVEEVSTGQEC K Y N L R R 2 1 2 1 0 0 1 1 1 0 2 0 1 1 0 3 2 0 3 3 0 0 24 0 2736.2854 P49588 P49588 487 510 AARS Alanine--tRNA ligase, cytoplasmic yes yes 3 4.5189E-17 88.836 By matching By MS/MS 1 3 1.3626 1.2186 18.422 4 Median 1.0403 1.0506 NaN 1 0 Median 1.505 1.3668 17.783 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2040700 849500 1191200 617440 279070 338360 1423300 570430 852880 0 0 0 0 0 0 0 0 0 0 0 0 39506 2385 41489 209582;209583;209584;209585 213034 213034 0 YNYIEGTK SADDGAHSQNEKLNRYNYIEGTKMLAAYLY QNEKLNRYNYIEGTKMLAAYLYEVSQLKD_ R Y N T K M 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 2 0 0 0 8 0 986.47091 Q96KP4 Q96KP4 454 461 CNDP2 Cytosolic non-specific dipeptidase yes yes 2 0.029224 60.436 By MS/MS 1 2.8219 2.4019 NaN 1 Median NaN NaN NaN 0 0 Median 2.8219 2.4019 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4948300 1272700 3675500 0 0 0 4948300 1272700 3675500 0 0 0 0 0 0 0 0 0 0 0 0 39507 3696 41490 209586 213035 213035 1 YPALIGNLVK WINRITAASQEHGLKYPALIGNLVKALPGW EHGLKYPALIGNLVKALPGWLKGLP_____ K Y P V K A 1 0 1 0 0 0 0 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 10 0 1086.6437 I3L2X1;Q9BYC9 I3L2X1 47 56 MRPL20 39S ribosomal protein L20, mitochondrial yes no 2 0.0023215 60.682 By MS/MS 1 1.0993 1.0393 NaN 1 Median 1.0993 1.0393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4300500 1969600 2330900 4300500 1969600 2330900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39508 1285 41491 209587 213036;213037 213037 2 YPALTKPENQDIDWTLLEGETR NPKLNLAFVANLFNKYPALTKPENQDIDWT ENQDIDWTLLEGETREERTFRNWMNSLGVN K Y P T R E 1 1 1 2 0 1 3 1 0 1 3 1 0 0 2 0 3 1 1 0 0 0 22 1 2588.2758 P13797;A0A0A0MSQ0;H7C4N2 P13797 377 398 PLS3 Plastin-3 yes no 3 4.4088E-18 101.29 By MS/MS By MS/MS By MS/MS 1 1 1 0.7742 0.7414 8.8421 3 Median 0.69051 0.69 NaN 1 0 Median 0.81383 0.7414 NaN 1 0 Median 0.7742 0.82267 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110940000 61040000 49895000 86301000 47779000 38523000 12294000 6163200 6130800 12340000 7098100 5241800 0 0 0 0 0 0 0 0 0 39509 1995 41492 209588;209589;209590 213038;213039;213040;213041;213042;213043;213044;213045 213040 8 YPALTKPENQDIDWTLLEGETREER NPKLNLAFVANLFNKYPALTKPENQDIDWT DIDWTLLEGETREERTFRNWMNSLGVNPHV K Y P E R T 1 2 1 2 0 1 5 1 0 1 3 1 0 0 2 0 3 1 1 0 0 0 25 2 3002.4621 P13797;A0A0A0MSQ0;H7C4N2 P13797 377 401 PLS3 Plastin-3 yes no 4 0.049219 9.7164 By MS/MS 1 0.80845 0.81614 NaN 1 Median 0.80845 0.81614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11410000 5857400 5553100 11410000 5857400 5553100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39510 1995 41493 209591 213046 213046 1 YPASSLVVVR IYGDLEFMNEQKLNRYPASSLVVVRSKTED QKLNRYPASSLVVVRSKTEDHEEAGPLPTK R Y P V R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 1 3 0 0 10 0 1089.6182 Q5T6Z8;Q9BXS4 Q5T6Z8 160 169 TMEM59 Transmembrane protein 59 yes no 2 0.011506 57.59 By MS/MS 1 0.92006 0.77998 NaN 1 Median NaN NaN NaN 0 0 Median 0.92006 0.77998 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4206000 2054300 2151700 0 0 0 4206000 2054300 2151700 0 0 0 0 0 0 0 0 0 0 0 0 39511 3094 41494 209592 213047 213047 1 YPASTVQILGAEK ARLIAHAGSLTNLAKYPASTVQILGAEKAL AKYPASTVQILGAEKALFRALKTRGNTPKY K Y P E K A 2 0 0 0 0 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 0 0 13 0 1375.7347 O00567;A0A494C128;H0YDU4;H0Y653 O00567 321 333 NOP56 Nucleolar protein 56 yes no 2 7.6331E-07 157.68 By matching By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 2 4 3 1.0085 0.904 20.367 12 Median 1.3326 1.253 NaN 1 0 Median 1.2177 1.0219 NaN 1 0 Median 0.926 0.89028 NaN 1 0 Median 1.4553 1.2421 32.418 2 0 Median 0.86752 0.86247 3.398 4 0 Median 1.0982 0.90333 20.467 3 0 Median 455870000 234230000 221630000 11009000 3753700 7255100 8648400 3636500 5012000 183570000 92889000 90681000 13341000 5948500 7392900 213650000 115420000 98223000 25649000 12581000 13068000 39512 1472 41495 209593;209594;209595;209596;209597;209598;209599;209600;209601;209602;209603;209604 213048;213049;213050;213051;213052;213053;213054;213055;213056;213057;213058;213059;213060;213061;213062;213063 213059 16 YPDHMKQHDFFK TLVTTFSYGVQCFSRYPDHMKQHDFFKSAM FSRYPDHMKQHDFFKSAMPEGYVQERTIFY R Y P F K S 0 0 0 2 0 1 0 0 2 0 0 2 1 2 1 0 0 0 1 0 0 0 12 1 1591.7242 P37840 P37840 214 225 SNCA Alpha-synuclein yes yes 3;4 0.0017596 41.401 By MS/MS By matching By matching By MS/MS 5 2 1 3 1.0141 0.94609 43.649 11 Median 1.0141 0.94609 21.604 5 0 Median 0.60658 0.57782 56.362 2 0 Median 0.63427 0.62049 NaN 1 0 Median 1.7378 1.6282 6.8083 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26708000 12449000 14259000 15185000 7109500 8075500 2986300 1659100 1327200 2231700 1179600 1052200 6305000 2501100 3803900 0 0 0 0 0 0 39513 2271 41496;41497 209605;209606;209607;209608;209609;209610;209611;209612;209613;209614;209615 213064;213065 213065 1021 2 YPDPLIK KGIPHLVTHDARTIRYPDPLIKVNDTIQID THDARTIRYPDPLIKVNDTIQIDLETGKIT R Y P I K V 0 0 0 1 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 7 0 844.46945 P62701;Q8TD47 P62701 149 155 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 0.013194 76.833 By MS/MS By MS/MS 1 1 0.81692 0.71344 0.52771 2 Median 0.78988 0.71611 NaN 1 0 Median 0.84488 0.71079 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46073000 25316000 20757000 41711000 23036000 18676000 4361700 2279800 2081900 0 0 0 0 0 0 0 0 0 0 0 0 39514 2593 41498 209616;209617 213066;213067;213068;213069;213070;213071;213072 213070 7 YPDPNFK KAAWHPRYNLIVVGRYPDPNFKSCTPYELR YNLIVVGRYPDPNFKSCTPYELRTIDVFDG R Y P F K S 0 0 1 1 0 0 0 0 0 0 0 1 0 1 2 0 0 0 1 0 0 0 7 0 879.41267 Q92466 Q92466 356 362 DDB2 DNA damage-binding protein 2 yes yes 2 0.058027 67.035 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39515 3527 41499 209618 213073 213073 1 YPDRVPVIVEK SLEHRCVESAKIRAKYPDRVPVIVEKVSGS IRAKYPDRVPVIVEKVSGSQIVDIDKRKYL K Y P E K V 0 1 0 1 0 0 1 0 0 1 0 1 0 0 2 0 0 0 1 3 0 0 11 1 1313.7343 P60520;H3BSM5;H6UMI1;O95166;F5GZY7;Q9H0R8 P60520 25 35 GABARAPL2;GABARAP;GABARAPL1 Gamma-aminobutyric acid receptor-associated protein-like 2;Gamma-aminobutyric acid receptor-associated protein;Gamma-aminobutyric acid receptor-associated protein-like 1 no no 3 0.00018239 66.989 By MS/MS By MS/MS By matching 1 1 1 0.84583 0.71827 15.478 3 Median NaN NaN NaN 0 0 Median 0.81353 0.71827 NaN 1 0 Median 0.87962 0.91659 NaN 1 0 Median 0.84583 0.68785 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15314000 8478400 6835700 0 0 0 11539000 6762200 4776900 3685000 1676400 2008700 90064 39876 50189 0 0 0 0 0 0 39516 2526;1241 41500 209619;209620;209621 213074;213075;213076;213077 213077 4 YPEAPPFVR YENRIYSLKIECGPKYPEAPPFVRFVTKIN IECGPKYPEAPPFVRFVTKINMNGVNSSNG K Y P V R F 1 1 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 0 1 1 0 0 9 0 1074.5498 Q13404;I3L0A0;G3V2F7;A0A0A0MSL3 Q13404 75 83 UBE2V1;TMEM189-UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1 yes no 2 0.00056885 113.5 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 1 2 1 0.71948 0.60548 11.336 7 Median 0.539 0.5037 NaN 1 1 Median 0.7892 0.66132 12.475 2 2 Median 0.61729 0.62308 NaN 1 0 Median 0.72747 0.58739 7.779 2 0 Median NaN NaN NaN 0 0 Median 0.71948 0.5635 NaN 1 0 Median 186350000 124620000 61725000 109150000 75338000 33817000 21509000 15437000 6072000 47408000 29013000 18395000 4385600 2578600 1807000 0 0 0 3888600 2254100 1634500 39517 2809 41501 209622;209623;209624;209625;209626;209627;209628;209629 213078;213079;213080;213081;213082;213083;213084;213085;213086 213081 9 YPEAPPSVR YENRIYSLKVECGPKYPEAPPSVRFVTKIN VECGPKYPEAPPSVRFVTKINMNGINNSSG K Y P V R F 1 1 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 1 0 0 9 0 1014.5134 Q15819;G3V113;H0YBP9;H0YBX6 Q15819 73 81 UBE2V2 Ubiquitin-conjugating enzyme E2 variant 2 yes no 2 0.00063785 107.9 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 0.64463 0.60727 29.284 4 Median 0.57464 0.55717 NaN 1 0 Median 0.79793 0.66187 NaN 1 0 Median 0.72315 0.73318 NaN 1 0 Median 0.47838 0.37679 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26728000 15307000 11422000 12166000 7288400 4877900 4679900 1802500 2877400 7881400 4844600 3036700 2000800 1371100 629710 0 0 0 0 0 0 39518 2973 41502 209630;209631;209632;209633;209634 213087;213088;213089;213090;213091;213092;213093 213089 7 YPEAQSVASDILR RFKILKAECLAMLGRYPEAQSVASDILRMD GRYPEAQSVASDILRMDSTNADALYVRGLC R Y P L R M 2 1 0 1 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 1 0 0 13 0 1447.7307 Q99615;K7ESP1;K7EIH8;K7EPP7 Q99615 192 204 DNAJC7 DnaJ homolog subfamily C member 7 yes no 2 6.9595E-07 159.83 By MS/MS By MS/MS 2 1 1.1335 1.1236 18.596 3 Plateau 0.98717 0.95085 22.109 2 0 Median NaN NaN NaN 0 0 Median 1.1335 1.132 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28549000 13255000 15294000 15566000 7368000 8197500 0 0 0 12984000 5887400 7096300 0 0 0 0 0 0 0 0 0 39519 3759 41503 209635;209636;209637 213094;213095;213096 213095 3 YPEDKITPENLPQILLQLK ASFGLSARDLDELSRYPEDKITPENLPQIL KITPENLPQILLQLKRRRTEEGPTLSYGRD R Y P L K R 0 0 1 1 0 2 2 0 0 2 4 2 0 0 3 0 1 0 1 0 0 0 19 1 2251.2464 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991 P43243 128 146 MATR3 Matrin-3 yes no 3 4.5852E-05 41.323 By MS/MS By matching 1 1 0.68107 0.68778 5.6741 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58989 0.66073 NaN 1 0 Median 0.78633 0.71593 NaN 1 0 Median 7434700 4715600 2719100 0 0 0 0 0 0 0 0 0 0 0 0 7163200 4561700 2601500 271560 153910 117650 39520 297 41504 209638;209639 213097;213098 213097 2 YPEETLSLMTK EARLKFPRLLQIIERYPEETLSLMTKEISS IIERYPEETLSLMTKEISSVPCWQFISWIS R Y P T K E 0 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 2 0 1 0 0 0 11 0 1310.6428 P78527 P78527 3475 3485 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00013889 117.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 5 4 5 1 3 1.2259 1.0871 18.119 20 Median 0.86363 0.84822 1.733 2 1 Median 1.2388 1.0968 8.7196 5 0 Median 0.76434 0.8349 2.0039 4 0 Median 1.3118 1.2191 2.7908 5 0 Median 0.83558 0.87429 NaN 1 0 Median 1.2953 1.1144 17.17 3 0 Median 241850000 127570000 114280000 46783000 25814000 20969000 33291000 14928000 18363000 127690000 71525000 56162000 24337000 10300000 14037000 7426500 3977500 3449100 2321200 1024400 1296800 39521 2647 41505;41506 209640;209641;209642;209643;209644;209645;209646;209647;209648;209649;209650;209651;209652;209653;209654;209655;209656;209657;209658;209659 213099;213100;213101;213102;213103;213104;213105;213106;213107;213108;213109;213110;213111;213112;213113;213114 213099 1341 16 YPENFFLLR QSLETICLLLAYKIKYPENFFLLRGNHECA LAYKIKYPENFFLLRGNHECASINRIYGFY K Y P L R G 0 1 1 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 1 0 0 0 9 0 1197.6182 P62140;E7ETD8;C9J9S3;C9JP48;P62136;E9PMD7;F8VYE8;P36873;F8VR82;F8W0W8;A0A087WYY5 P62136 114 122 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.0028446 69.198 By MS/MS By matching By MS/MS By MS/MS By matching By matching 2 1 2 3 2 3 0.98529 0.87378 20.635 13 Median 0.88866 0.87538 17.093 2 0 Median 1.2546 1.0837 NaN 1 0 Median 0.8054 0.80577 11.422 2 0 Median 1.0313 0.88946 21.759 3 0 Plateau 1.177 1.1899 25.614 2 0 Median 1.0735 0.87378 8.4391 3 0 Plateau 29514000 14999000 14515000 5629600 2808500 2821100 286280 140940 145350 18512000 9566200 8946200 2792600 1340500 1452200 1424600 712270 712380 868880 430900 437980 39522 2569;1074;2570 41507 209660;209661;209662;209663;209664;209665;209666;209667;209668;209669;209670;209671;209672 213115;213116;213117;213118;213119 213117 5 YPESLRPAFPR IRKKAVLIMYKVFLKYPESLRPAFPRLKEK VFLKYPESLRPAFPRLKEKLEDPDPGVQSA K Y P P R L 1 2 0 0 0 0 1 0 0 0 1 0 0 1 3 1 0 0 1 0 0 0 11 1 1331.6986 O14617;A0A2R8Y4J3;A0A087WYN6 O14617 177 187 AP3D1 AP-3 complex subunit delta-1 yes no 3 0.00029134 82.417 By MS/MS 1 0.54342 0.59053 NaN 1 Median 0.54342 0.59053 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5814000 3823600 1990500 5814000 3823600 1990500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39523 1485 41508 209673 213120 213120 1 YPFESAEAQLLNK GIGVQGLADAFILMRYPFESAEAQLLNKQI MRYPFESAEAQLLNKQIFETIYYGALEASC R Y P N K Q 2 0 1 0 0 1 2 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1508.7511 P23921;E9PL69 P23921 517 529 RRM1 Ribonucleoside-diphosphate reductase large subunit yes no 2 2.156E-14 134.84 By MS/MS 2 0.94951 0.85132 NaN 1 Median 0.94951 0.85132 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18302000 9688000 8614400 18302000 9688000 8614400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39524 2121 41509 209674;209675 213121;213122;213123;213124 213124 4 YPFILPHQQVDK QREGPFYPTLRLLHKYPFILPHQQVDKGAI LHKYPFILPHQQVDKGAIKFVLSGANIMCP K Y P D K G 0 0 0 1 0 2 0 0 1 1 1 1 0 1 2 0 0 0 1 1 0 0 12 0 1483.7823 Q9ULC4;A0A3B3IRV3 Q9ULC4 88 99 MCTS1 Malignant T-cell-amplified sequence 1 yes no 2;3 4.6046E-06 117.7 By matching By matching By MS/MS By MS/MS 1 1 2 2 0.87145 0.77449 6.1015 6 Median 0.72845 0.67706 NaN 1 0 Median 0.91659 0.79562 NaN 1 0 Median 0.82405 0.77309 0.77083 2 0 Median 0.94661 0.7849 2.4046 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 125820000 68881000 56941000 6063000 3337300 2725700 1373100 744070 629050 104840000 58042000 46802000 13542000 6757800 6784100 0 0 0 0 0 0 39525 4323 41510 209676;209677;209678;209679;209680;209681 213125;213126;213127;213128;213129;213130;213131;213132;213133;213134;213135;213136;213137;213138 213126 14 YPGSTFMDHVLR TTDGVYEGVAIGGDRYPGSTFMDHVLRYQD GDRYPGSTFMDHVLRYQDTPGVKMIVVLGE R Y P L R Y 0 1 0 1 0 0 0 1 1 0 1 0 1 1 1 1 1 0 1 1 0 0 12 0 1421.6762 P53396 P53396 692 703 ACLY ATP-citrate synthase yes yes 3 0.045389 27.664 By MS/MS 1 0.48432 0.46833 NaN 1 Median 0.48432 0.46833 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4142000 2712400 1429600 4142000 2712400 1429600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39526 2467 41511 209682 213139 213139 1 YPHMLSVK LNIKLTDISVTDPEKYPHMLSVKNCFIRGS SVTDPEKYPHMLSVKNCFIRGSVVRYVQLP K Y P V K N 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 0 0 8 0 973.50552 Q9Y333 Q9Y333 51 58 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.0057212 74.255 By MS/MS 1 1.3863 1.1426 NaN 1 Median NaN NaN NaN 0 0 Median 1.3863 1.1426 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7473100 3456600 4016500 0 0 0 7473100 3456600 4016500 0 0 0 0 0 0 0 0 0 0 0 0 39527 4405 41512 209683 213140;213141 213141 2 YPHVEDYRR RYYITRAKLVSKIAKYPHVEDYRRTVTEID VSKIAKYPHVEDYRRTVTEIDEKEYISLRL K Y P R R T 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 2 1 0 0 9 1 1233.5891 K9J957;P61289;K7ESG5;A0A087WTV2;B3KQ25 K9J957 173 181 PSME3 Proteasome activator complex subunit 3 yes no 3 0.00032664 82.287 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 1 1 1.1291 1.0943 42.649 6 Median 1.1946 1.286 NaN 1 0 Median 1.1156 0.98637 28.027 2 0 Median 1.6657 1.7386 NaN 1 0 Median 1.0671 0.99584 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.56855 0.50647 NaN 1 0 Median 36693000 12072000 24620000 15312000 4302600 11009000 9575700 3231700 6344000 2553900 631250 1922700 6939400 2336600 4602800 0 0 0 2311600 1570000 741630 39528 1403 41513 209684;209685;209686;209687;209688;209689 213142;213143;213144;213145;213146;213147 213146 5 YPIEHGIITNWDDMEK VGDEAQSKRGILTLKYPIEHGIITNWDDME PIEHGIITNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 3 0 1 1 0 1 0 1 1 1 0 0 0 16 0 1959.9037 P63267;P62736;C9JFL5;F6UVQ4;F6QUT6;F8WB63;B8ZZJ2;P68032;P68133;A6NL76 P68032 71 86 ACTG2;ACTA2;ACTC1;ACTA1 Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle no no 2;3 8.7727E-11 165.7 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 9 15 17 10 3 7 0.91632 0.84089 17.009 61 Median 0.92931 0.85132 20.574 9 0 Median 1.0111 0.86764 12.232 15 2 Median 0.71558 0.73902 14.563 17 0 Median 0.9709 0.82753 16.162 10 0 Median 0.79369 0.75761 19.095 3 0 Median 0.99165 0.82718 22.841 7 0 Median 5218000000 2735400000 2482600000 524770000 260060000 264710000 2217600000 1083800000 1133800000 2384100000 1344700000 1039400000 57217000 27662000 29555000 28449000 16292000 12157000 5888100 2920600 2967500 39529 2630;2595 41514;41515 209690;209691;209692;209693;209694;209695;209696;209697;209698;209699;209700;209701;209702;209703;209704;209705;209706;209707;209708;209709;209710;209711;209712;209713;209714;209715;209716;209717;209718;209719;209720;209721;209722;209723;209724;209725;209726;209727;209728;209729;209730;209731;209732;209733;209734;209735;209736;209737;209738;209739;209740;209741;209742;209743;209744;209745;209746;209747;209748;209749;209750 213148;213149;213150;213151;213152;213153;213154;213155;213156;213157;213158;213159;213160;213161;213162;213163;213164;213165;213166;213167;213168;213169;213170;213171;213172;213173;213174;213175;213176;213177;213178;213179;213180;213181;213182;213183;213184;213185;213186;213187;213188;213189 213167 1262 42 YPIEHGIITNWDDMEKIWHHTFYNELR VGDEAQSKRGILTLKYPIEHGIITNWDDME DMEKIWHHTFYNELRVAPEEHPTLLTEAPL K Y P L R V 0 1 2 2 0 0 3 1 3 4 1 1 1 1 1 0 2 2 2 0 0 0 27 1 3456.635 P68032;P68133;A6NL76 P68032 71 97 ACTC1;ACTA1 Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle yes no 4 3.5823E-05 30.958 By MS/MS 1 0.83873 0.78688 NaN 1 Median NaN NaN NaN 0 0 Median 0.83873 0.78688 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3527100 1907900 1619200 0 0 0 3527100 1907900 1619200 0 0 0 0 0 0 0 0 0 0 0 0 39530 2630 41516 209751 213190;213191 213190 2 YPIEHGIVTNWDDMEK VGDEAQSKRGILTLKYPIEHGIVTNWDDME PIEHGIVTNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 2 0 1 1 0 1 0 1 1 1 1 0 0 16 0 1945.888 P63261;P60709;A0A2R8Y793;I3L1U9;I3L3I0;I3L3R2;I3L4N8;J3KT65;A0A2R8YGF8;E7EVS6;K7EM38;G5E9R0;C9JZR7;C9JUM1 P63261 69 84 ACTG1;ACTB Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes no 3 0.057759 9.9211 By MS/MS By matching 1 1 0.85499 0.83835 26.583 2 Median 1.0853 1.0117 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.67355 0.69469 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 52811000 30440000 22371000 8487200 4543500 3943700 0 0 0 44324000 25897000 18427000 0 0 0 0 0 0 0 0 0 39531 2625 41517 209752;209753 213192 213192 1 YPIPPPDAK IWSMGLSLVEMAVGRYPIPPPDAKELELMF EMAVGRYPIPPPDAKELELMFGCQVEGDAA R Y P A K E 1 0 0 1 0 0 0 0 0 1 0 1 0 0 4 0 0 0 1 0 0 0 9 0 996.52803 P36507;A0A1B0GUL7;G5E9C7;H3BRW9;Q02750 Q02750 261 269 MAP2K2;MAP2K1 Dual specificity mitogen-activated protein kinase kinase 2;Dual specificity mitogen-activated protein kinase kinase 1 no no 2 0.031748 48.561 By MS/MS 1 1.0013 1.1042 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0013 1.1042 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2369600 1176700 1192900 0 0 0 0 0 0 2369600 1176700 1192900 0 0 0 0 0 0 0 0 0 39532 2256;2700 41518 209754 213193 213193 1 YPLFEGQETGKK DLANGNITWADVEARYPLFEGQETGKKETI EARYPLFEGQETGKKETIEE__________ R Y P K K E 0 0 0 0 0 1 2 2 0 0 1 2 0 1 1 0 1 0 1 0 0 0 12 1 1395.7034 P41250 P41250 723 734 GARS Glycine--tRNA ligase yes yes 2;3 0.0067773 42.718 By MS/MS By MS/MS By matching 2 2 1 0.92484 0.89459 32.448 5 Median 0.86835 0.89505 16.079 2 0 Median 0.67901 0.65708 43.637 2 0 Median 0.97359 1.11 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21827000 12449000 9377600 10999000 5702700 5296000 8787100 5932100 2855000 2040900 814340 1226600 0 0 0 0 0 0 0 0 0 39533 2301 41519 209755;209756;209757;209758;209759 213194;213195;213196;213197;213198;213199 213194 6 YPLSGMGLPTFK FIFNKKGQIELTGKRYPLSGMGLPTFKEWI GKRYPLSGMGLPTFKEWIQNTLGVNVEHKT R Y P F K E 0 0 0 0 0 0 0 2 0 0 2 1 1 1 2 1 1 0 1 0 0 0 12 0 1309.674 O00116;A0A1B0GWA2 O00116 118 129 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal yes no 2 0.012077 36.334 By MS/MS By matching 1 1 0.75308 0.69704 3.2389 2 Median 0.70594 0.68125 NaN 1 0 Median 0.80335 0.71319 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2855100 1526000 1329100 2273000 1202800 1070200 582110 323220 258890 0 0 0 0 0 0 0 0 0 0 0 0 39534 1439 41520 209760;209761 213200 213200 1 YPMAVGLNK ______________________________ ______________________________ R Y P N K G 1 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 9 0 991.51609 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 5 13 RPL36 60S ribosomal protein L36 yes no 2 0.00055791 111.73 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 2 3 3 5 1.0504 0.96619 18.58 20 Median 1.0195 0.95419 40.006 3 0 Median 1.0382 0.85211 8.3796 4 1 Median 1.0253 0.98403 2.3371 2 0 Median 1.206 0.96694 6.3882 3 1 Median 1.014 1.0976 5.6647 3 0 Median 1.1658 0.95899 20.258 5 0 Median 410740000 192400000 218330000 142350000 63111000 79244000 168810000 84216000 84594000 23737000 10709000 13028000 22631000 10415000 12216000 23329000 10749000 12581000 29876000 13206000 16670000 39535 4434 41521;41522 209762;209763;209764;209765;209766;209767;209768;209769;209770;209771;209772;209773;209774;209775;209776;209777;209778;209779;209780;209781 213201;213202;213203;213204;213205;213206;213207;213208;213209;213210;213211;213212;213213;213214;213215;213216;213217;213218;213219;213220;213221;213222;213223;213224;213225;213226 213217 1982 26 YPMAYVDYK KPLLRRASAYEALEKYPMAYVDYKTVLQID YEALEKYPMAYVDYKTVLQIDDNVTSAVEG K Y P Y K T 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 3 1 0 0 9 0 1148.5212 Q15785 Q15785 101 109 TOMM34 Mitochondrial import receptor subunit TOM34 yes yes 2 0.0048762 59.35 By matching By matching By MS/MS By MS/MS 1 1 1 2 1.284 1.1326 5.6695 5 Median 1.2 1.15 NaN 1 0 Median 1.3392 1.1326 NaN 1 0 Median 1.1726 1.1241 NaN 1 0 Median 1.3808 1.17 10.73 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13660000 6089100 7570800 4779000 2193100 2585900 1428900 635880 792980 5249800 2312500 2937200 2202300 947530 1254800 0 0 0 0 0 0 39536 2971 41523 209782;209783;209784;209785;209786 213227;213228 213227 2 YPMEHGIVK IGPKAEEHRGLLSIRYPMEHGIVKDWNDME GLLSIRYPMEHGIVKDWNDMERIWQYVYSK R Y P V K D 0 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 1 1 0 0 9 0 1072.5376 P61163;R4GMT0;A0A1B0GVS3 P61163 73 81 ACTR1A Alpha-centractin yes no 2 0.0022569 73.248 By MS/MS By MS/MS By MS/MS 1 1 1 1.0675 0.90979 12.279 3 Median NaN NaN NaN 0 0 Median 1.0675 0.90979 NaN 1 0 Median 0.84276 0.87205 NaN 1 0 Median 1.2995 1.0983 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22851000 11744000 11106000 0 0 0 11228000 5386300 5842100 9508000 5404500 4103600 2114300 953740 1160500 0 0 0 0 0 0 39537 2547 41524 209787;209788;209789 213229;213230;213231;213232;213233;213234 213233 6 YPPPTELLDLQPLPVSALR TQLPVSFRHLILPEKYPPPTELLDLQPLPV TELLDLQPLPVSALRNSAFESLYQDKFPFF K Y P L R N 1 1 0 1 0 1 1 0 0 0 5 0 0 0 5 1 1 0 1 1 0 0 19 0 2118.1725 O75643;A0A494C1A5 O75643 1295 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2;3 6.7853E-11 97.953 By matching By matching By MS/MS By matching 1 2 2 2 0.42146 0.44194 48.757 7 Median 0.42146 0.4159 NaN 1 0 Median 0.22412 0.20591 36.031 2 0 Median 0.46091 0.51162 20.703 2 0 Median 0.61449 0.56478 11.284 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6763500 4680300 2083200 480030 333780 146250 938890 630350 308530 4746000 3340000 1406000 598580 376160 222420 0 0 0 0 0 0 39538 1688 41525 209790;209791;209792;209793;209794;209795;209796 213235;213236;213237;213238;213239 213237 5 YPQGVASQR KIREIVQQVKQQEQKYPQGVASQRSK____ KQQEQKYPQGVASQRSK_____________ K Y P Q R S 1 1 0 0 0 2 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 9 0 1004.5039 F8W930;Q9Y6M1 F8W930 595 603 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes no 2 0.027065 51.346 By MS/MS 1 0.95056 0.82478 NaN 1 Median NaN NaN NaN 0 0 Median 0.95056 0.82478 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3013200 1642200 1371100 0 0 0 3013200 1642200 1371100 0 0 0 0 0 0 0 0 0 0 0 0 39539 1088 41526 209797 213240 213240 1 YPQLLPGIR ILDDGGDLTNLIHTKYPQLLPGIRGISEET NLIHTKYPQLLPGIRGISEETTTGVHNLYK K Y P I R G 0 1 0 0 0 1 0 1 0 1 2 0 0 0 2 0 0 0 1 0 0 0 9 0 1055.6128 P23526 P23526 143 151 AHCY Adenosylhomocysteinase yes yes 2 3.0958E-07 130.77 By MS/MS By MS/MS By MS/MS By matching 6 4 2 2 1.0177 0.90295 10.559 12 Median 0.92756 0.87857 5.4565 4 1 Median 1.018 0.88746 11.898 4 0 Median 1.0231 1.0653 2.241 2 0 Median 1.0901 0.94047 7.838 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 82004000 41944000 40060000 54477000 28921000 25555000 17841000 8176900 9664600 8996000 4527600 4468500 689690 317860 371830 0 0 0 0 0 0 39540 2116 41527 209798;209799;209800;209801;209802;209803;209804;209805;209806;209807;209808;209809;209810;209811 213241;213242;213243;213244;213245;213246;213247;213248;213249;213250;213251;213252;213253;213254;213255;213256;213257;213258;213259;213260;213261;213262 213251 22 YPQQYQPSPLPVHYELLTDGYTR DRRLRVDFAKAEETRYPQQYQPSPLPVHYE PLPVHYELLTDGYTRHRNLDADLVRDRTPP R Y P T R H 0 1 0 1 0 3 1 1 1 0 3 0 0 0 4 1 2 0 4 1 0 0 23 0 2764.3497 Q8NDT2 Q8NDT2 497 519 RBM15B Putative RNA-binding protein 15B yes yes 3 3.9423E-06 38.583 By MS/MS 1 0.47455 0.5096 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.47455 0.5096 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3309700 2133400 1176400 0 0 0 0 0 0 3309700 2133400 1176400 0 0 0 0 0 0 0 0 0 39541 3424 41528 209812 213263 213263 1 YPRPASVPPSPSLSR FTYEPNEADAAQGYRYPRPASVPPSPSLSR YPRPASVPPSPSLSRHSSPHQSEDEEDPRN R Y P S R H 1 2 0 0 0 0 0 0 0 0 1 0 0 0 5 4 0 0 1 1 0 0 15 1 1609.8576 P13807 P13807 636 650 GYS1 Glycogen [starch] synthase, muscle yes yes 3 0.001972 46.318 By MS/MS 1 0.29563 0.30311 NaN 1 Median 0.29563 0.30311 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2508400 2037000 471410 2508400 2037000 471410 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39542 1997 41529 209813 213264 213264 1 YPSHSFIGEESVAAGEK DQKVEKMLISSIKEKYPSHSFIGEESVAAG SHSFIGEESVAAGEKSILTDNPTWIIDPID K Y P E K S 2 0 0 0 0 0 3 2 1 1 0 1 0 1 1 3 0 0 1 1 0 0 17 0 1806.8424 P29218;E5RIP7;H0YBL1;E5RG94;E5RIF4;E5RHE9;E5RI82;E5RGY4 P29218 62 78 IMPA1 Inositol monophosphatase 1 yes no 3 7.274E-06 56.959 By MS/MS 1 1.3452 1.1326 NaN 1 Median NaN NaN NaN 0 0 Median 1.3452 1.1326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3994400 2046500 1947800 0 0 0 3994400 2046500 1947800 0 0 0 0 0 0 0 0 0 0 0 0 39543 2169 41530 209814 213265;213266 213265 2 YPSLELER SGASVVAIRKYIIHKYPSLELERRGYLLKQ RKYIIHKYPSLELERRGYLLKQALKRELNR K Y P E R R 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 8 0 1005.5131 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 191 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.0024224 108.7 By MS/MS By matching By MS/MS 1 1 3 0.69724 0.70196 19.662 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.73483 0.74213 NaN 1 0 Median 1.2077 0.98871 NaN 1 0 Median 0.64805 0.65234 2.4986 2 2 Median NaN NaN NaN 0 0 Median 54348000 29978000 24370000 0 0 0 0 0 0 26446000 14925000 11522000 307790 111760 196020 27594000 14942000 12652000 0 0 0 39544 3075 41531 209815;209816;209817;209818;209819 213267;213268;213269;213270;213271;213272 213268 6 YPSLSLHGIEGAFSGSGAK LLHSHKKDILMHRWRYPSLSLHGIEGAFSG SLHGIEGAFSGSGAKTVIPRKVVGKFSIRL R Y P A K T 2 0 0 0 0 0 1 4 1 1 2 1 0 1 1 4 0 0 1 0 0 0 19 0 1876.9319 Q96KP4 Q96KP4 311 329 CNDP2 Cytosolic non-specific dipeptidase yes yes 3 0.013862 28.333 By MS/MS 1 0.77924 0.66234 NaN 1 Median NaN NaN NaN 0 0 Median 0.77924 0.66234 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6239000 3648300 2590700 0 0 0 6239000 3648300 2590700 0 0 0 0 0 0 0 0 0 0 0 0 39545 3696 41532 209820 213273 213273 1 YPSPFFVFGEK HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR QDMKYPSPFFVFGEKIRTRAISAKGMTLVT K Y P E K I 0 0 0 0 0 0 1 1 0 0 0 1 0 3 2 1 0 0 1 1 0 0 11 0 1316.6441 Q08211 Q08211 1038 1048 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0005643 67.113 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 5 2 4 6 0.97766 0.92157 21.914 22 Median 1.0554 1.0272 9.6926 3 0 Median 1.1173 0.95653 3.5 2 0 Median 0.86834 0.91815 7.6807 5 0 Median 1.2779 1.1119 12.294 2 0 Median 0.88057 0.90737 3.2267 4 0 Median 1.0607 0.88371 37.679 6 0 Median 86627000 44496000 42131000 12898000 6326000 6571600 5738000 2792300 2945700 31795000 16565000 15231000 1179200 531430 647790 33308000 17522000 15786000 1708600 759360 949280 39546 2736 41533 209821;209822;209823;209824;209825;209826;209827;209828;209829;209830;209831;209832;209833;209834;209835;209836;209837;209838;209839;209840;209841;209842 213274;213275;213276;213277;213278;213279;213280;213281;213282;213283;213284;213285;213286;213287;213288;213289;213290;213291;213292;213293;213294;213295;213296;213297;213298;213299;213300 213293 27 YPSPPMGSVSAPNLPTAEDNLEYVR IHYLDTTTLIEPAPRYPSPPMGSVSAPNLP APNLPTAEDNLEYVRTLYDFPGNDAEDLPF R Y P V R T 2 1 2 1 0 0 2 1 0 0 2 0 1 0 5 3 1 0 2 2 0 0 25 0 2703.285 P46109 P46109 105 129 CRKL Crk-like protein yes yes 3 0.0022917 25.021 By MS/MS 1 0.42346 0.41332 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.42346 0.41332 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2132500 1500400 632090 0 0 0 0 0 0 2132500 1500400 632090 0 0 0 0 0 0 0 0 0 39547 2341 41534 209843 213301 213301 1 YPTFIDALR DNKPNYKLDHIIKERYPTFIDALRDLDDAL HIIKERYPTFIDALRDLDDALSMCFLFSTF R Y P L R D 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 9 0 1094.576 B5MCF9;O00541 B5MCF9 124 132 PES1 Pescadillo homolog yes no 2 0.0084827 50.04 By matching By matching By MS/MS By matching By matching 2 1 2 1 1 1.0472 0.97618 12.268 7 Median 1.0181 0.95408 3.238 2 0 Median 1.274 1.0984 NaN 1 0 Median 0.85487 0.85729 21.229 2 0 Median 1.1389 0.99114 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0947 0.96343 NaN 1 0 Median 17762000 8643300 9118300 10873000 5115900 5757100 253660 97548 156120 6214700 3247700 2967000 125950 57575 68371 0 0 0 294280 124590 169680 39548 618 41535 209844;209845;209846;209847;209848;209849;209850 213302;213303 213302 2 YPVGVHFLPK NQVMAQIELWTHPDKYPVGVHFLPKKLDEA THPDKYPVGVHFLPKKLDEAVAEAHLGKLN K Y P P K K 0 0 0 0 0 0 0 1 1 0 1 1 0 1 2 0 0 0 1 2 0 0 10 0 1155.6441 P23526 P23526 379 388 AHCY Adenosylhomocysteinase yes yes 2 0.0041692 54.157 By MS/MS By MS/MS By matching 3 3 1 1.0667 0.913 19.569 7 Median 0.90259 0.83184 20.445 3 0 Median 1.0667 0.913 1.9059 3 0 Median NaN NaN NaN 0 0 Median 1.4816 1.326 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 54655000 28906000 25749000 41220000 22647000 18573000 9227800 4310100 4917700 0 0 0 4207000 1948700 2258300 0 0 0 0 0 0 39549 2116 41536 209851;209852;209853;209854;209855;209856;209857 213304;213305;213306;213307 213305 4 YPVNSVNILK AVLAIKYTDIRGQPRYPVNSVNILKAHGRS RGQPRYPVNSVNILKAHGRSQMESMLISGY R Y P L K A 0 0 2 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 2 0 0 10 0 1145.6445 P17987;E7ERF2;E7EQR6 P17987 190 199 TCP1 T-complex protein 1 subunit alpha yes no 2 0.0006596 97.431 By MS/MS By MS/MS By MS/MS By matching 1 2 1 1 1.0475 0.91131 35.645 5 Median 0.97115 0.89505 NaN 1 0 Median 1.1992 1.0066 21.11 2 0 Median 0.94226 0.91131 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.9125 2.0215 NaN 1 0 Median NaN NaN NaN 0 0 Median 235590000 116210000 119380000 100760000 49794000 50965000 106730000 52357000 54376000 27438000 13850000 13589000 0 0 0 660080 211180 448900 0 0 0 39550 2051 41537 209858;209859;209860;209861;209862 213308;213309;213310;213311;213312;213313;213314;213315 213312 8 YPVPENWLHK HKSIEEIVRRLDPNKYPVPENWLHKEAHQL LDPNKYPVPENWLHKEAHQLFLEPEVLDPE K Y P H K E 0 0 1 0 0 0 1 0 1 0 1 1 0 0 2 0 0 1 1 1 0 0 10 0 1281.6506 P39748;I3L3E9 P39748 268 277 FEN1 Flap endonuclease 1 yes no 2;3 0.0095388 45.081 By MS/MS By matching By matching 2 1 1 0.72423 0.69466 22.261 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72423 0.71331 12.131 2 0 Median 0.8263 0.73709 NaN 1 0 Median 0.4311 0.47313 NaN 1 0 Median NaN NaN NaN 0 0 Median 17192000 10554000 6638600 0 0 0 0 0 0 9711700 5343400 4368300 860740 340850 519890 6620000 4869600 1750500 0 0 0 39551 2283 41538 209863;209864;209865;209866 213316;213317;213318 213317 3 YPVYGVQWHPEK TDGKIEFISTMEGYKYPVYGVQWHPEKAPY GYKYPVYGVQWHPEKAPYEWKNLDGISHAP K Y P E K A 0 0 0 0 0 1 1 1 1 0 0 1 0 0 2 0 0 1 2 2 0 0 12 0 1501.7354 Q92820 Q92820 236 247 GGH Gamma-glutamyl hydrolase yes yes 2;3 5.2439E-06 100.02 By MS/MS By matching By MS/MS By MS/MS By matching 3 2 2 3 1 1.0986 1.0392 41.85 11 Median 0.68345 0.6301 17.45 3 0 Median 1.4801 1.2801 29.479 2 0 Median 0.76492 0.78614 1.7797 2 0 Median 1.6304 1.3753 11.211 3 0 Median NaN NaN NaN 0 0 Median 1.0986 1.9325 NaN 1 0 Median 49248000 26824000 22424000 30503000 17136000 13367000 1866400 694400 1172000 13982000 7899400 6082700 2707900 1019600 1688300 0 0 0 189160 75184 113980 39552 3560 41539 209867;209868;209869;209870;209871;209872;209873;209874;209875;209876;209877 213319;213320;213321;213322;213323;213324 213322 6 YPYLMLGDSLVLK YKYQVNVDGTVAAYRYPYLMLGDSLVLKQD YRYPYLMLGDSLVLKQDSPYYEHFYMALEP R Y P L K Q 0 0 0 1 0 0 0 1 0 0 4 1 1 0 1 1 0 0 2 1 0 0 13 0 1510.8105 Q7Z4H8 Q7Z4H8 382 394 KDELC2 KDEL motif-containing protein 2 yes yes 2 0.024156 28.727 By MS/MS By MS/MS 1 1 1.0065 0.92003 15.68 2 Median 0.85098 0.82347 NaN 1 0 Median 1.1905 1.0279 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2972200 1369300 1603000 1554900 810830 744070 1417300 558440 858900 0 0 0 0 0 0 0 0 0 0 0 0 39553 3246 41540 209878;209879 213325;213326;213327 213325 3 YQADITDLLK KTLLADKGEIRVGNRYQADITDLLKEGEED RVGNRYQADITDLLKEGEEDGRDQSRLETQ R Y Q L K E 1 0 0 2 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1178.6183 E7ESY4;Q13330 E7ESY4 173 182 MTA1 Metastasis-associated protein MTA1 yes no 2 0.0075902 47.603 By MS/MS By matching By MS/MS 1 1 3 0.82092 0.82596 23.204 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82092 0.82596 NaN 1 0 Median 1.2258 1.0649 NaN 1 0 Median 1.005 1.0405 26.589 3 0 Plateau NaN NaN NaN 0 0 Median 24620000 12820000 11800000 0 0 0 0 0 0 15170000 8015100 7154900 1378000 584260 793770 8072100 4220800 3851400 0 0 0 39554 888 41541 209880;209881;209882;209883;209884 213328;213329;213330 213329 3 YQAEIPDRLVEGESDNR KTLLADQGEIRVGCKYQAEIPDRLVEGESD AEIPDRLVEGESDNRNQQKMEMKVWDPDNP K Y Q N R N 1 2 1 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 17 1 1989.9392 O94776 O94776 153 169 MTA2 Metastasis-associated protein MTA2 yes yes 3 0.00042716 50.053 By MS/MS 1 1.6778 1.8722 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6778 1.8722 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8888000 2599300 6288700 0 0 0 0 0 0 8888000 2599300 6288700 0 0 0 0 0 0 0 0 0 39555 1723 41542 209885 213331 213331 1 YQAVLPIQTGSLVAAAK GEPAAAGAGCSPRPKYQAVLPIQTGSLVAA AVLPIQTGSLVAAAKEPTPWAGDKGGAASP K Y Q A K E 4 0 0 0 0 2 0 1 0 1 2 1 0 0 1 1 1 0 1 2 0 0 17 0 1728.9774 J3KSZ8;J3QQY0;Q68DK7 J3KSZ8 131 147 MSL1 Male-specific lethal 1 homolog yes no 2 3.9521E-05 64.121 By MS/MS 1 0.83232 0.88507 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.83232 0.88507 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3669700 2126700 1542900 0 0 0 0 0 0 3669700 2126700 1542900 0 0 0 0 0 0 0 0 0 39556 1332 41543 209886 213332 213332 1 YQAVQEAVEDR APDFVQRGFDSFLGRYQAVQEAVEDRQQHL FLGRYQAVQEAVEDRQQHLENELKGQPGHA R Y Q D R Q 2 1 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 11 0 1306.6153 P46939 P46939 886 896 UTRN Utrophin yes yes 2 0.00062319 90.108 By MS/MS 1 0.62932 0.63333 NaN 1 Median 0.62932 0.63333 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3994900 2395200 1599700 3994900 2395200 1599700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39557 2349 41544 209887 213333 213333 1 YQAVTATLEEK KFAYLGRLAHEVGWKYQAVTATLEEKRKEK VGWKYQAVTATLEEKRKEKAKIHYRKKKQL K Y Q E K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 11 0 1251.6347 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 149 159 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 2.0665E-10 179.8 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 6 1 3 4 4 1.102 1.0285 15.145 22 Median 1.0335 0.94402 15.093 6 0 Median 1.1193 0.94303 9.261 4 0 Median 1.1037 1.0358 NaN 1 0 Median 1.2128 1.1456 23.479 3 0 Median 1.0764 1.092 13.118 4 0 Median 1.2879 1.0579 15.719 4 0 Median 1057700000 489580000 568080000 534010000 248770000 285250000 161850000 73663000 88189000 77657000 36971000 40686000 25720000 11379000 14341000 170220000 79501000 90721000 88196000 39297000 48899000 39558 2288 41545 209888;209889;209890;209891;209892;209893;209894;209895;209896;209897;209898;209899;209900;209901;209902;209903;209904;209905;209906;209907;209908;209909;209910;209911 213334;213335;213336;213337;213338;213339;213340;213341;213342;213343;213344;213345;213346;213347;213348;213349;213350;213351;213352;213353;213354;213355;213356;213357;213358;213359;213360;213361;213362;213363;213364;213365;213366;213367;213368;213369;213370;213371;213372;213373;213374;213375 213359 42 YQAVTATLEEKR KFAYLGRLAHEVGWKYQAVTATLEEKRKEK GWKYQAVTATLEEKRKEKAKIHYRKKKQLM K Y Q K R K 2 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 12 1 1407.7358 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 149 160 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2;3 6.6366E-06 109.42 By MS/MS By matching By MS/MS By matching 2 1 1 1 1.0559 1.1118 25.05 5 Median 1.1242 1.1798 8.3842 2 1 Median 0.8695 0.80882 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0117 1.0694 NaN 1 0 Median 1.7984 1.6113 NaN 1 0 Median 19694000 9422300 10271000 11223000 5086700 6136100 3730500 2006000 1724600 0 0 0 0 0 0 3992500 2002200 1990300 747920 327400 420530 39559 2288 41546 209912;209913;209914;209915;209916 213376;213377 213376 2 YQAVTATLEEKRK KFAYLGRLAHEVGWKYQAVTATLEEKRKEK WKYQAVTATLEEKRKEKAKIHYRKKKQLMR K Y Q R K E 2 1 0 0 0 1 2 0 0 0 1 2 0 0 0 0 2 0 1 1 0 0 13 2 1535.8308 P40429;M0QYS1;Q8J015;Q6NVV1 P40429 149 161 RPL13A;RPL13a;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 3 0.0081805 28.297 By MS/MS By matching 1 1 0.97859 0.86445 6.056 2 Median NaN NaN NaN 0 0 Median 0.95523 0.82821 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0025 0.90227 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2514100 1144900 1369200 0 0 0 570660 245290 325370 0 0 0 1943500 899620 1043900 0 0 0 0 0 0 39560 2288 41547 209917;209918 213378 213378 1 YQAYMSNLESHSAILDQK SLRKLKASLQGDVQKYQAYMSNLESHSAIL YMSNLESHSAILDQKLNGLNEEIARVELEC K Y Q Q K L 2 0 1 1 0 2 1 0 1 1 2 1 1 0 0 3 0 0 2 0 0 0 18 0 2096.9837 O14777 O14777 310 327 NDC80 Kinetochore protein NDC80 homolog yes yes 3 1.9825E-06 59.003 By matching By MS/MS 1 1 1.0874 1.1054 3.0995 2 Median 1.1316 1.1299 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.045 1.0814 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8468200 3935400 4532800 1521300 754490 766760 0 0 0 6946900 3180900 3766000 0 0 0 0 0 0 0 0 0 39561 1495 41548 209919;209920 213379 213379 1 YQDAETLYK KTKNNLASCYLKQGKYQDAETLYKEILTRA YLKQGKYQDAETLYKEILTRAHEKEFGSVN K Y Q Y K E 1 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 1 0 2 0 0 0 9 0 1129.5292 Q9H0B6;A8MZ87 Q9H0B6 382 390 KLC2 Kinesin light chain 2 yes no 2 0.032216 48.283 By MS/MS 1 1.9077 1.6223 NaN 1 Median NaN NaN NaN 0 0 Median 1.9077 1.6223 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4653800 1493700 3160100 0 0 0 4653800 1493700 3160100 0 0 0 0 0 0 0 0 0 0 0 0 39562 3922 41549 209921 213380 213380 1 YQDIEKESESASELHK PDLFSKEEVGDFIQRYQDIEKESESASELH QDIEKESESASELHKLLQPFLLRRVKAEVA R Y Q H K L 1 0 0 1 0 1 4 0 1 1 1 2 0 0 0 3 0 0 1 0 0 0 16 1 1891.88 Q86WJ1;A0A0A0MRH8;A0A494C1F7;A0A0A0MSH9;A0A494C1P7;A0A087WTM4;A0A494C0J6;A0A494C0F0 Q86WJ1 237 252 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes no 3 0.00024203 42.647 By MS/MS By matching By matching 1 1 1 1.0827 1.005 5.121 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81785 0.93439 NaN 1 0 Median 1.0827 1.0314 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1102 1.005 NaN 1 0 Median 8881400 4438700 4442700 0 0 0 0 0 0 6862000 3560700 3301300 1161200 515400 645800 0 0 0 858220 362610 495610 39563 3293 41550 209922;209923;209924 213381 213381 1 YQDIIHSIHLAR QGIRESQLKERLEKRYQDIIHSIHLARKPN EKRYQDIIHSIHLARKPNLGLKSCDGNQEL R Y Q A R K 1 1 0 1 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1464.7837 Q9UIG0 Q9UIG0 1025 1036 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 2.5339E-05 96.89 By MS/MS By MS/MS By matching 2 4 2 0.83966 0.80697 18.427 8 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8132 0.88932 14.108 2 1 Median NaN NaN NaN 0 0 Median 0.84807 0.86897 18.787 4 0 Median 0.86436 0.70617 17.34 2 0 Median 39040000 22012000 17029000 0 0 0 0 0 0 5445000 2984400 2460600 0 0 0 32140000 18249000 13891000 1455300 777870 677410 39564 4290 41551 209925;209926;209927;209928;209929;209930;209931;209932 213382;213383;213384;213385 213384 4 YQDILVFR LSLQVEQLLHHRRSRYQDILVFRSKTYGNV LHHRRSRYQDILVFRSKTYGNVLVLDGVIQ R Y Q F R S 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 P19623;K7EKM4 P19623 48 55 SRM Spermidine synthase yes no 2 0.0035542 89.142 By MS/MS 1 1.3244 1.2393 NaN 1 Median 1.3244 1.2393 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19979000 8531200 11447000 19979000 8531200 11447000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39565 2068 41552 209933 213386;213387 213387 2 YQDLGAYSSAR EVEQFTQVAKAYQDRYQDLGAYSSARKCLA YQDRYQDLGAYSSARKCLAKQRQRMLQERK R Y Q A R K 2 1 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 2 0 0 0 11 0 1229.5677 O96000;H3BPJ9 O96000 137 147 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes no 2 0.0001186 136.63 By MS/MS By MS/MS By MS/MS 1 1 1 1.1872 1.1277 22.488 3 Median 1.1872 1.1277 NaN 1 0 Median 1.8899 1.5995 NaN 1 1 Median 1.0937 1.051 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33204000 13648000 19556000 21415000 8869300 12546000 3369700 1066500 2303200 8419000 3711700 4707400 0 0 0 0 0 0 0 0 0 39566 1223 41553 209934;209935;209936 213388;213389;213390;213391 213389 4 YQDTPGVK GDRYPGSTFMDHVLRYQDTPGVKMIVVLGE FMDHVLRYQDTPGVKMIVVLGEIGGTEEYK R Y Q V K M 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 8 0 906.4447 P53396 P53396 704 711 ACLY ATP-citrate synthase yes yes 2 0.0071745 89.296 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39567 2467 41554 209937 213392 213392 1 YQEALDVIR AEVELYYMILERLGKYQEALDVIRGKLGEK LERLGKYQEALDVIRGKLGEKLTSEIQSRE K Y Q I R G 1 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1105.5768 Q14CX7 Q14CX7 209 217 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit yes yes 2 0.0014358 81.548 By MS/MS By MS/MS By MS/MS 1 1 1 1.1625 1.0295 9.2369 3 Median 1.1625 1.1199 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8755 0.93123 NaN 1 0 Median 1.2122 1.0295 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24478000 11186000 13292000 11916000 5305500 6610800 0 0 0 7602300 3796200 3806100 4959200 2084000 2875200 0 0 0 0 0 0 39568 2908 41555 209938;209939;209940 213393;213394;213395;213396 213395 4 YQEALHLGSQLLR ALEARLVSLYFDTKRYQEALHLGSQLLREL KRYQEALHLGSQLLRELKKMDDKALLVEVQ R Y Q L R E 1 1 0 0 0 2 1 1 1 0 4 0 0 0 0 1 0 0 1 0 0 0 13 0 1526.8205 O00231 O00231 143 155 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes yes 2;3 6.4352E-09 127.42 By MS/MS By matching By MS/MS By matching 7 2 2 1 1.1122 1.0545 13.381 11 Median 1.1181 1.084 11.713 6 1 Median 1.2704 1.0961 18.8 2 0 Median 1.1041 1.1057 15.488 2 2 Median 1.0008 0.87309 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67854000 31641000 36212000 54703000 25537000 29167000 2473000 1049900 1423100 9888200 4640900 5247300 789200 413960 375250 0 0 0 0 0 0 39569 1448 41556 209941;209942;209943;209944;209945;209946;209947;209948;209949;209950;209951;209952 213397;213398;213399;213400;213401;213402;213403;213404;213405 213400 9 YQEAQEEIMK VIENMNKEKAFLFEKYQEAQEEIMKLKDTL FLFEKYQEAQEEIMKLKDTLKSQMTQEASD K Y Q M K L 1 0 0 0 0 2 3 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 10 0 1267.5755 Q9P0K7 Q9P0K7 601 610 RAI14 Ankycorbin yes yes 2 0.00048844 95.502 By MS/MS 1 1.2838 1.0976 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2838 1.0976 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2652100 998920 1653200 0 0 0 0 0 0 0 0 0 2652100 998920 1653200 0 0 0 0 0 0 39570 4204 41557 209953 213406;213407 213406 2 YQEEVPVYVPK PQVFAPLSEESKNKKYQEEVPVYVPKWMPF KNKKYQEEVPVYVPKWMPFKELMMMLQASL K Y Q P K W 0 0 0 0 0 1 2 0 0 0 0 1 0 0 2 0 0 0 2 3 0 0 11 0 1349.6867 O43264 O43264 709 719 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.0083164 40.724 By MS/MS 1 0.58864 0.54012 NaN 1 Median 0.58864 0.54012 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7564700 5054000 2510600 7564700 5054000 2510600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39571 1562 41558 209954 213408 213408 1 YQELINDIAR LKKLTELGTVDPKNKYQELINDIARDIRNQ DPKNKYQELINDIARDIRNQRRYRQRRKAE K Y Q A R D 1 1 1 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 10 0 1233.6354 P46940;H0YLE8 P46940 1478 1487 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes no 2 3.1639E-23 155.07 By MS/MS By MS/MS By matching By matching By matching 2 1 2 1 1 1.0551 0.95142 13.865 6 Median 1.1342 1.0643 NaN 1 1 Median 1.0815 0.91703 NaN 1 0 Median 0.8579 0.93158 26.267 2 0 Median 1.118 0.9871 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0294 0.85602 NaN 1 0 Median 58668000 28082000 30585000 20392000 9761800 10630000 30091000 14037000 16054000 6944700 3705300 3239400 928190 428740 499450 0 0 0 312160 149720 162440 39572 2350 41559 209955;209956;209957;209958;209959;209960;209961 213409;213410;213411;213412 213410 4 YQELLER DGVPFTAADPDYQEKYQELLEREDFFPDYE ADPDYQEKYQELLEREDFFPDYEENGTDLS K Y Q E R E 0 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 949.4869 Q9H074;H0YA44 Q9H074 423 429 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes no 2 0.007908 94.262 By MS/MS By MS/MS 1 1 0.83833 0.80948 3.5646 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7892 0.83014 NaN 1 1 Median 0.89053 0.78933 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3036300 1730300 1306000 0 0 0 0 0 0 2085300 1244300 841050 950980 486060 464920 0 0 0 0 0 0 39573 3919 41560 209962;209963 213413;213414 213413 2 YQELPNSGPPHDR EELNTYRQKQGVVLKYQELPNSGPPHDRRF LKYQELPNSGPPHDRRFTFQVIIDGREFPE K Y Q D R R 0 1 1 1 0 1 1 1 1 0 1 0 0 0 3 1 0 0 1 0 0 0 13 0 1508.7008 P19525;F8WBH4;C9JZT2 P19525 27 39 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 3 0.0017078 38.189 By matching By matching By MS/MS 1 1 2 0.55174 0.50827 28.465 4 Median 0.52421 0.53022 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.74996 0.72734 NaN 1 0 Median 0.50356 0.42121 20.593 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5450700 3362700 2088000 1990900 1241700 749200 0 0 0 490720 238820 251900 2969100 1882200 1086900 0 0 0 0 0 0 39574 2067 41561 209964;209965;209966;209967 213415;213416 213415 2 YQELPNSGPPHDRR EELNTYRQKQGVVLKYQELPNSGPPHDRRF KYQELPNSGPPHDRRFTFQVIIDGREFPEG K Y Q R R F 0 2 1 1 0 1 1 1 1 0 1 0 0 0 3 1 0 0 1 0 0 0 14 1 1664.8019 P19525;F8WBH4;C9JZT2 P19525 27 40 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes no 4 0.018181 21.913 By MS/MS 1 0.78398 0.7316 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78398 0.7316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 743890 417310 326590 0 0 0 0 0 0 0 0 0 743890 417310 326590 0 0 0 0 0 0 39575 2067 41562 209968 213417 213417 1 YQELQITAGR AQRSKDEAEALYQTKYQELQITAGRHGDDL LYQTKYQELQITAGRHGDDLKNSKMEIAEL K Y Q G R H 1 1 0 0 0 2 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1177.6091 CON__Q7Z794;Q7Z794 CON__Q7Z794 361 370 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.0025402 73.985 By MS/MS By MS/MS By MS/MS 1 1 2 0.33115 0.29701 84.631 2 Median 0.54329 0.54033 NaN 1 1 Median 0.20184 0.16326 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10921000 8209000 2711900 6556600 4057200 2499400 2400100 2187600 212440 0 0 0 1964100 1964100 0 0 0 0 0 0 0 + 39576 789 41563 209969;209970;209971;209972 213418;213419;213420;213421 213418 4 YQEQLVQEQELAK VDKQLASELEYDMKKYQEQLVQEQELAKHA KKYQEQLVQEQELAKHADVAGTAGGAEVAP K Y Q A K H 1 0 0 0 0 4 3 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 13 0 1604.8046 P42695;E9PQA3 P42695 1259 1271 NCAPD3 Condensin-2 complex subunit D3 yes no 2 0.00037658 86.344 By MS/MS 2 1.2545 1.354 12.916 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2545 1.354 12.916 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11956000 5607800 6348100 0 0 0 0 0 0 11956000 5607800 6348100 0 0 0 0 0 0 0 0 0 39577 2313 41564 209973;209974 213422;213423 213422 2 YQETFNVIER DVARISWYLRDIITRYQETFNVIERCPKPV DIITRYQETFNVIERCPKPVIAAVHGGCIG R Y Q E R C 0 1 1 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 10 0 1297.6303 Q13011;M0R248;M0QZW4 Q13011 149 158 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes no 2 0.00055566 116.3 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.1977 1.0774 18.158 4 Median 1.0036 0.93661 NaN 1 0 Median 1.3776 1.1455 NaN 1 0 Median 1.0413 1.0133 NaN 1 1 Median 1.7029 1.4206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 120970000 53912000 67061000 78130000 36912000 41218000 19234000 7920700 11314000 16499000 6475800 10023000 7109200 2603100 4506100 0 0 0 0 0 0 39578 2778 41565 209975;209976;209977;209978 213424;213425;213426;213427;213428;213429;213430 213424 7 YQEVTNNLEFAK KGERLNQDQLDAVSKYQEVTNNLEFAKELQ VSKYQEVTNNLEFAKELQRSFMALSQDIQK K Y Q A K E 1 0 2 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 12 0 1454.7042 Q14444;E9PLA9;G3V153 Q14444 99 110 CAPRIN1 Caprin-1 yes no 2 3.2326E-06 109.42 By MS/MS By MS/MS By MS/MS 3 2 4 1.0689 1.171 14.261 9 Linear 1.1267 1.0718 10.898 3 1 Median NaN NaN NaN 0 0 Median 0.96743 1.0081 13.211 2 1 Median 1.0644 0.91385 8.3728 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 154980000 68875000 86104000 86854000 35802000 51052000 0 0 0 46534000 22654000 23880000 21591000 10419000 11172000 0 0 0 0 0 0 39579 2878 41566 209979;209980;209981;209982;209983;209984;209985;209986;209987 213431;213432;213433;213434;213435;213436;213437;213438;213439;213440;213441 213431 11 YQEYIPVQTGAHADLNPFYQK EVTINVTSKAGGIKKYQEYIPVQTGAHADL VQTGAHADLNPFYQKYSSRTQHAILYMNPH K Y Q Q K Y 2 0 1 1 0 3 1 1 1 1 1 1 0 1 2 0 1 0 3 1 0 0 21 0 2481.1965 A0A087WYN9;Q7Z478 A0A087WYN9 808 828 DHX29 ATP-dependent RNA helicase DHX29 yes no 3 0.0051998 23.726 By MS/MS By matching 1 1 0.7798 0.76821 8.652 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.75617 0.81667 NaN 1 0 Median 0.80417 0.72262 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2692800 1318600 1374200 0 0 0 0 0 0 2432300 1185200 1247000 260530 133410 127130 0 0 0 0 0 0 39580 84 41567 209988;209989 213442 213442 1 YQFDPNLGIR QLAPFLPQLVPRLYRYQFDPNLGIRQAMTS PRLYRYQFDPNLGIRQAMTSIWNALVTDKS R Y Q I R Q 0 1 1 1 0 1 0 1 0 1 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1221.6142 Q5VYK3;J3KN16 Q5VYK3 1130 1139 ECM29;KIAA0368 Proteasome-associated protein ECM29 homolog yes no 2 0.0016815 81.296 By MS/MS 1 0.82355 0.77277 NaN 1 Median 0.82355 0.77277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27262000 13937000 13326000 27262000 13937000 13326000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39581 3116 41568 209990 213443 213443 1 YQFLEEAFQNQK LTCRDCQLLEHKEHRYQFLEEAFQNQKGAI EHRYQFLEEAFQNQKGAIENLLAKLLEKKN R Y Q Q K G 1 0 1 0 0 3 2 0 0 0 1 1 0 2 0 0 0 0 1 0 0 0 12 0 1543.7307 H0Y612;Q9UPN9 H0Y612 46 57 TRIM33 E3 ubiquitin-protein ligase TRIM33 yes no 2 0.061231 24.776 By matching By MS/MS 1 1 1.0413 1.0354 5.8935 2 Median NaN NaN NaN 0 0 Median 1.0872 0.99318 NaN 1 0 Median 0.99728 1.0795 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3220300 1484400 1735900 0 0 0 232830 111230 121600 2987400 1373100 1614300 0 0 0 0 0 0 0 0 0 39582 1152 41569 209991;209992 213444 213444 1 YQFTPAFLR EGGGDVDISAGRFVRYQFTPAFLRLRTVGA AGRFVRYQFTPAFLRLRTVGATVEFTVGDK R Y Q L R L 1 1 0 0 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 9 0 1141.592 A6NIH7;K7EJU3;K7EN86;C9JSK0;Q13432 A6NIH7 142 150 UNC119B;UNC119 Protein unc-119 homolog B;Protein unc-119 homolog A yes no 2 0.0034481 65.038 By MS/MS By matching By matching By matching By matching By matching 1 1 2 1 1 1 0.95468 0.84084 14.951 7 Median 0.83757 0.78407 NaN 1 0 Median 0.95468 0.80308 NaN 1 0 Median 0.80554 0.77537 11.463 2 0 Median 1.0372 0.84542 NaN 1 0 Median 1.1382 1.1123 NaN 1 0 Median 1.123 0.99002 NaN 1 0 Median 25016000 12798000 12218000 16172000 8360200 7811400 2117500 1042800 1074700 4934400 2569700 2364700 237830 109790 128040 1323100 604950 718150 231610 111080 120530 39583 520 41570 209993;209994;209995;209996;209997;209998;209999 213445;213446 213446 2 YQGTILSIDDNLQR KNKVTKEQYNMLGGKYQGTILSIDDNLQRT KYQGTILSIDDNLQRTCTGTININIQSFGN K Y Q Q R T 0 1 1 2 0 2 0 1 0 2 2 0 0 0 0 1 1 0 1 0 0 0 14 0 1634.8264 Q02413 Q02413 460 473 DSG1 Desmoglein-1 yes yes 2 0.0002176 78.908 By MS/MS By MS/MS 1 1 0.071229 0.075344 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.071229 0.075344 NaN 1 1 Median NaN NaN NaN 0 0 Median 3834600 3753700 80893 0 0 0 0 0 0 1923000 1923000 0 0 0 0 1911600 1830700 80893 0 0 0 39584 2698 41571 210000;210001 213447;213448 213447 2 YQGVNLYIK LKRKFEQLKQERISRYQGVNLYIKNLDDTI QERISRYQGVNLYIKNLDDTIDDEKLRKEF R Y Q I K N 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 9 0 1096.5917 B1ANR0;Q13310;H0Y5F5;H0YEU6 B1ANR0 291 299 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 no no 2 0.0029042 68.787 By MS/MS By matching By MS/MS By matching By MS/MS By matching 2 2 1 1 1 2 1.258 1.0545 77.632 9 Median 2.1527 1.9892 69.626 2 0 Median 1.1157 0.95509 13.998 2 0 Median 1.5762 1.619 NaN 1 0 Median 1.1821 1.0279 NaN 1 0 Median 1.7706 1.8183 NaN 1 0 Median 0.52301 0.43537 120.51 2 0 Median 76868000 34691000 42177000 34420000 15542000 18878000 22180000 10516000 11664000 8276800 3249100 5027700 1103300 530540 572790 7175600 2851800 4323800 3711100 2001300 1709800 39585 576;1151 41572 210002;210003;210004;210005;210006;210007;210008;210009;210010 213449;213450;213451;213452 213450 4 YQGVNLYVK LKRKFEQMKQDRITRYQGVNLYVKNLDDGI QDRITRYQGVNLYVKNLDDGIDDERLRKEF R Y Q V K N 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 2 2 0 0 9 0 1082.576 P11940;E7EQV3;E7ERJ7;A0A087WTT1;H0YAR2;H0YAP2;Q4VXU2 P11940 291 299 PABPC1;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 1-like yes no 2 0.00094593 89.142 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 1 1 1.1391 0.99662 25.331 7 Median 1.1321 0.99662 33.072 3 0 Median 1.0255 0.85232 NaN 1 0 Median 1.2511 1.2492 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3806 1.405 NaN 1 0 Median 1.1391 0.93809 NaN 1 0 Median 187280000 89404000 97877000 94046000 47292000 46754000 47937000 23208000 24729000 23082000 9664400 13418000 0 0 0 19384000 7898900 11485000 2832500 1341000 1491600 39586 1973 41573 210011;210012;210013;210014;210015;210016;210017 213453;213454;213455;213456;213457;213458;213459 213454 7 YQIDDKPNNQIR IIPRGHRRGRIDDLRYQIDDKPNNQIRISK DLRYQIDDKPNNQIRISKQLAEFVPLDYSV R Y Q I R I 0 1 2 2 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 0 12 1 1502.7478 Q9NP92 Q9NP92 231 242 MRPS30 28S ribosomal protein S30, mitochondrial yes yes 3 0.00025806 60.641 By MS/MS By MS/MS By MS/MS 1 1 1 1.0463 1.0027 14.681 3 Median 0.8154 0.81454 NaN 1 0 Median 1.1838 1.0815 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0463 1.0027 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12572000 6180200 6391400 4309900 2090400 2219500 2555800 1266500 1289300 0 0 0 5705900 2823300 2882600 0 0 0 0 0 0 39587 4043 41574 210018;210019;210020 213460;213461;213462;213463;213464 213463 5 YQILPLHSQIPR MQKHLEMNPHFGSHRYQILPLHSQIPREEQ SHRYQILPLHSQIPREEQRKVFDPVPVGVT R Y Q P R E 0 1 0 0 0 2 0 0 1 2 2 0 0 0 2 1 0 0 1 0 0 0 12 0 1463.8249 Q08211 Q08211 681 692 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.6553E-21 194.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 3 5 2 4 3 0.87928 0.83939 11.83 20 Median 1.0055 0.98466 13.277 3 0 Plateau 1.1054 0.91879 11.961 3 0 Median 0.79493 0.87329 12.048 5 0 Median 1.0575 0.89936 25.348 2 0 Median 0.77458 0.78874 7.1652 4 0 Median 1.1059 0.8934 10.464 3 0 Plateau 380560000 200830000 179730000 31787000 16388000 15399000 25268000 11871000 13397000 202260000 108100000 94161000 6740400 3087300 3653100 102970000 56116000 46855000 11532000 5265700 6266300 39588 2736 41575 210021;210022;210023;210024;210025;210026;210027;210028;210029;210030;210031;210032;210033;210034;210035;210036;210037;210038;210039;210040 213465;213466;213467;213468;213469;213470;213471;213472;213473;213474;213475;213476;213477;213478;213479;213480;213481;213482;213483;213484;213485;213486;213487;213488;213489;213490;213491;213492;213493;213494;213495;213496;213497;213498;213499;213500;213501;213502;213503;213504;213505;213506;213507 213472 43 YQILPLHSQIPREEQR MQKHLEMNPHFGSHRYQILPLHSQIPREEQ QILPLHSQIPREEQRKVFDPVPVGVTKVIL R Y Q Q R K 0 2 0 0 0 3 2 0 1 2 2 0 0 0 2 1 0 0 1 0 0 0 16 1 2006.0698 Q08211 Q08211 681 696 DHX9 ATP-dependent RNA helicase A yes yes 3;4 4.6839E-07 89.541 By matching By MS/MS By matching 1 2 1 0.8176 0.95425 17.074 4 Median 0.64973 0.70607 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.8176 0.99438 6.7499 2 0 Median NaN NaN NaN 0 0 Median 0.88402 0.9605 NaN 1 0 Median NaN NaN NaN 0 0 Median 42672000 22379000 20293000 2638500 1052100 1586400 0 0 0 34024000 18495000 15529000 0 0 0 6009300 2831200 3178200 0 0 0 39589 2736 41576 210041;210042;210043;210044 213508;213509;213510;213511 213511 4 YQKSTELLIR HRYRPGTVALREIRRYQKSTELLIRKLPFQ REIRRYQKSTELLIRKLPFQRLVREIAQDF R Y Q I R K 0 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 10 1 1249.703 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 55 64 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2;3 0.00011192 102.06 By MS/MS By MS/MS 8 6 1.0607 1.0801 13.672 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.9433 1.0328 11.882 8 2 Median 1.3328 1.123 15.646 6 0 Median 147290000 68487000 78800000 0 0 0 0 0 0 0 0 0 0 0 0 89624000 45034000 44590000 57664000 23453000 34210000 39590 1366;3104 41577 210045;210046;210047;210048;210049;210050;210051;210052;210053;210054;210055;210056;210057;210058 213512;213513;213514;213515;213516;213517;213518;213519;213520;213521;213522 213522 11 YQLAVTK VFGRLFDLCHPIHKKYQLAVTKVFGRFITA LCHPIHKKYQLAVTKVFGRFITAIVVASEK K Y Q T K V 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 821.4647 Q8NDV3 Q8NDV3 530 536 SMC1B Structural maintenance of chromosomes protein 1B yes yes 2 0.014708 73.616 By matching By MS/MS By matching By MS/MS By MS/MS 1 1 2 2 2 0.80188 0.75864 109.94 8 Median 0.17846 0.15923 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.76897 0.83317 NaN 1 0 Median 0.45691 0.36964 189.53 2 0 Median 0.31417 0.34912 151.06 2 0 Median 1.0185 0.85683 30.466 2 2 Median 27518000 16511000 11007000 141470 110250 31215 0 0 0 5136000 2752800 2383200 2140900 1621900 519000 13876000 8832800 5043300 6223700 3193300 3030400 39591 3425 41578 210059;210060;210061;210062;210063;210064;210065;210066 213523;213524;213525;213526;213527 213525 5 YQLDKDGVVLFK DIPFGITSNSDVFSKYQLDKDGVVLFKKFD FSKYQLDKDGVVLFKKFDEGRNNFEGEVTK K Y Q F K K 0 0 0 2 0 1 0 1 0 0 2 2 0 1 0 0 0 0 1 2 0 0 12 1 1423.7711 P07237;H7BZ94;I3L398;I3L312;I3L3U6 P07237 196 207 P4HB Protein disulfide-isomerase yes no 2;3 0.00017122 96.113 By MS/MS By matching By MS/MS By matching 5 2 2 1 1.2458 1.2354 17.341 10 Median 1.1927 1.1191 8.6008 5 0 Median 1.5636 1.4701 5.7558 2 0 Median 1.15 1.2024 17.527 2 0 Median 1.7498 1.7491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 88234000 38209000 50025000 65900000 28703000 37198000 5603900 2135000 3469000 16420000 7240400 9179200 310490 131320 179170 0 0 0 0 0 0 39592 1883 41579 210067;210068;210069;210070;210071;210072;210073;210074;210075;210076 213528;213529;213530;213531;213532;213533;213534;213535;213536;213537;213538 213531 11 YQLDKDGVVLFKK DIPFGITSNSDVFSKYQLDKDGVVLFKKFD SKYQLDKDGVVLFKKFDEGRNNFEGEVTKE K Y Q K K F 0 0 0 2 0 1 0 1 0 0 2 3 0 1 0 0 0 0 1 2 0 0 13 2 1551.8661 P07237;H7BZ94;I3L398;I3L312;I3L3U6 P07237 196 208 P4HB Protein disulfide-isomerase yes no 2;3 0.00037222 86.114 By MS/MS By matching 3 1 1.287 1.3474 25.279 4 Median 1.3443 1.3718 27.4 3 0 Plateau NaN NaN NaN 0 0 Median 1.2322 1.456 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 85756000 39002000 46753000 83929000 38289000 45640000 0 0 0 1826700 713140 1113600 0 0 0 0 0 0 0 0 0 39593 1883 41580 210077;210078;210079;210080 213539;213540;213541;213542;213543 213539 4 YQLDPTASISAK WTSGTNCTRFGIAAKYQLDPTASISAKVNN AAKYQLDPTASISAKVNNSSLIGVGYTQTL K Y Q A K V 2 0 0 1 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 12 0 1292.6612 A0A0A0MR02;P45880 A0A0A0MR02 236 247 VDAC2 Voltage-dependent anion-selective channel protein 2 yes no 2 0.00044051 78.653 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 1 3 4 1.1385 0.9559 25.425 18 Median 0.91332 0.83641 15.126 6 1 Median 1.5803 1.3572 15.753 5 1 Median 0.9327 0.89853 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.4853 1.513 14.124 3 1 Median 1.0977 0.90507 12.579 3 0 Median 866840000 434960000 431880000 671210000 348380000 322830000 108400000 46177000 62223000 21096000 10201000 10895000 0 0 0 33626000 13901000 19726000 32515000 16302000 16213000 39594 151 41581 210081;210082;210083;210084;210085;210086;210087;210088;210089;210090;210091;210092;210093;210094;210095;210096;210097;210098;210099 213544;213545;213546;213547;213548;213549;213550;213551;213552;213553;213554;213555;213556;213557;213558;213559;213560;213561;213562;213563;213564;213565;213566;213567;213568;213569;213570 213546 27 YQLEIPENFTTR IGCRTIVYWGIGRNRYQLEIPENFTTRNLP RNRYQLEIPENFTTRNLPEEYELKSTKKGC R Y Q T R N 0 1 1 0 0 1 2 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 12 0 1509.7464 P52701;A0A494C0M1;A0A087WWJ1 P52701 977 988 MSH6 DNA mismatch repair protein Msh6 yes no 2 2.3576E-07 125.74 By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 0.93913 0.84441 9.3187 8 Median 0.8171 0.77924 0.56826 2 1 Median 1.0864 0.92436 2.9963 2 0 Median 0.72669 0.7875 0.070496 2 2 Median 1.0824 0.93718 1.0631 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 67731000 37580000 30151000 35401000 19337000 16063000 4943700 2293000 2650700 24041000 14390000 9651000 3346100 1560200 1786000 0 0 0 0 0 0 39595 2453 41582 210100;210101;210102;210103;210104;210105;210106;210107 213571;213572;213573;213574;213575;213576;213577;213578 213573 8 YQLLQLRPAQR LQIQMRDLEGYRETRYQLLQLRPAQRASWI RETRYQLLQLRPAQRASWIGYAIAYHLLED R Y Q Q R A 1 2 0 0 0 3 0 0 0 0 3 0 0 0 1 0 0 0 1 0 0 0 11 1 1384.7939 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 138 148 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes no 2;3 0.00070336 91.853 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 1 1 2 1 1.124 1.2724 23.62 7 Median 1.1754 1.3059 3.669 2 1 Median 1.124 1.112 NaN 1 0 Median 1.1068 1.2789 NaN 1 0 Median 0.9149 0.85213 31.119 2 1 Median NaN NaN NaN 0 0 Median 1.4395 1.3013 NaN 1 0 Median 57952000 26346000 31606000 39678000 18335000 21343000 5052700 2471300 2581500 9090500 3402400 5688100 3887400 2040600 1846900 0 0 0 243090 96778 146310 39596 213 41583 210108;210109;210110;210111;210112;210113;210114 213579;213580;213581;213582;213583;213584 213579 6 YQLLQLVEPFGVISNHLILNK RVVHIMDFQRGKNLRYQLLQLVEPFGVISN VEPFGVISNHLILNKINEAFIEMATTEDAQ R Y Q N K I 0 0 2 0 0 2 1 1 1 2 5 1 0 1 1 1 0 0 1 2 0 0 21 0 2437.3733 P43243;A8MXP9;A0A0R4J2E8;D6REM6;D6R991;H0Y8T4;B3KM87;D6RE02;D6RIA2;D6RBK5;D6RBI2 P43243 413 433 MATR3 Matrin-3 yes no 2;3 0.023153 20.106 By MS/MS By MS/MS By matching 4 1 1 1.1256 0.98039 3.1231 5 Median NaN NaN NaN 0 0 Median 1.1286 1.0011 2.6129 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91356 0.9447 NaN 1 0 Median 1.1256 0.98039 NaN 1 0 Median 6224400 2891300 3333200 0 0 0 2473500 1106700 1366800 0 0 0 0 0 0 3630600 1736400 1894200 120310 48170 72141 39597 297 41584 210115;210116;210117;210118;210119;210120 213585;213586;213587;213588 213588 4 YQLLVYHADSLFHDK TMSNNNPELFSPPQKYQLLVYHADSLFHDK YQLLVYHADSLFHDKEYRNAVSKYTMALQQ K Y Q D K E 1 0 0 2 0 1 0 0 2 0 3 1 0 1 0 1 0 0 2 1 0 0 15 0 1847.9206 Q9UJX3 Q9UJX3 77 91 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 3 0.064312 17.489 By MS/MS 1 0.91289 0.93471 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.91289 0.93471 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3148600 1689900 1458800 0 0 0 0 0 0 3148600 1689900 1458800 0 0 0 0 0 0 0 0 0 39598 4301 41585 210121 213589 213589 1 YQLLVYHADSLFHDKEYR TMSNNNPELFSPPQKYQLLVYHADSLFHDK LVYHADSLFHDKEYRNAVSKYTMALQQKKA K Y Q Y R N 1 1 0 2 0 1 1 0 2 0 3 1 0 1 0 1 0 0 3 1 0 0 18 1 2296.1277 Q9UJX3 Q9UJX3 77 94 ANAPC7 Anaphase-promoting complex subunit 7 yes yes 4 9.5453E-05 40.179 By MS/MS 1 0.84023 0.94294 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84023 0.94294 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12262000 6479200 5782300 0 0 0 0 0 0 12262000 6479200 5782300 0 0 0 0 0 0 0 0 0 39599 4301 41586 210122 213590 213590 1 YQLSAIFK RMLEVFVLKFHTIARYQLSAIFKKCKPQSE KFHTIARYQLSAIFKKCKPQSELGAVEAAL R Y Q F K K 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 0 8 0 968.53312 F2Z2U4;Q9Y4A5;H0Y4W2 F2Z2U4 462 469 TRRAP Transformation/transcription domain-associated protein yes no 2 0.075154 29.376 By MS/MS By matching 2 1 1.0829 1.0001 44.634 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0058 1.1002 62.64 2 0 Median 1.0829 1.0001 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6456300 3436000 3020200 0 0 0 0 0 0 5975800 3229700 2746100 480430 206320 274110 0 0 0 0 0 0 39600 991 41587 210123;210124;210125 213591 213591 1 YQLSIHK RYAKIVEIPFNSTNKYQLSIHKNPNTSEPQ IPFNSTNKYQLSIHKNPNTSEPQHLLVMKG K Y Q H K N 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 1 0 0 1 0 0 0 7 0 887.4865 P05023 P05023 488 494 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 2 0.009327 84.244 By matching By MS/MS 1 4 1.2276 1.0803 84.061 4 Median 1.721 1.701 NaN 1 0 Median 1.1214 0.994 85.21 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25460000 13486000 11974000 3260800 1195300 2065500 22199000 12291000 9908200 0 0 0 0 0 0 0 0 0 0 0 0 39601 1857 41588 210126;210127;210128;210129;210130 213592;213593;213594;213595 213595 4 YQLSIHKNPNTSEPQHLLVMK RYAKIVEIPFNSTNKYQLSIHKNPNTSEPQ KNPNTSEPQHLLVMKGAPERILDRCSSILL K Y Q M K G 0 0 2 0 0 2 1 0 2 1 3 2 1 0 2 2 1 0 1 1 0 0 21 1 2476.2897 P05023 P05023 488 508 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 yes yes 3;4;5 1.8388E-05 38.453 By MS/MS 9 0.8001 0.8082 11.606 9 Median 0.8001 0.8082 11.606 9 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 100570000 50931000 49634000 100570000 50931000 49634000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39602 1857 41589 210131;210132;210133;210134;210135;210136;210137;210138;210139 213596;213597;213598;213599;213600 213596 5 YQLVAHIK ANFQLHCKTDKHVQKYQLVAHIKEGGKANE TDKHVQKYQLVAHIKEGGKANEWRLKCVAI K Y Q I K E 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 970.56 Q15911;E7EVZ1;Q86UP3;A0A494BZV7;E5RI93 Q15911 1012 1019 ZFHX3;ZFHX4 Zinc finger homeobox protein 3;Zinc finger homeobox protein 4 no no 2 0.026458 41.892 By MS/MS 1 1.2384 1.3566 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2384 1.3566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1945300 910520 1034800 0 0 0 0 0 0 1945300 910520 1034800 0 0 0 0 0 0 0 0 0 39603 2977;898 41590 210140 213601 213601 1 YQNLIDVGFSK HIYTELQLIEEALQKYQNLIDVGFSKSSYI ALQKYQNLIDVGFSKSSYIVSQIAVAYHNI K Y Q S K S 0 0 1 1 0 1 0 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1282.6558 Q9UJX2 Q9UJX2 251 261 CDC23 Cell division cycle protein 23 homolog yes yes 2 0.010425 62.303 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39604 4300 41591 210141 213602 213602 1 YQPFKPLSIGGIIILK MPAQLKVLTMPETCRYQPFKPLSIGGIIIL QPFKPLSIGGIIILKDTSEDIEELVEPVAA R Y Q L K D 0 0 0 0 0 1 0 2 0 4 2 2 0 1 2 1 0 0 1 0 0 0 16 1 1786.0757 A0A087WW66;Q99460 A0A087WW66 900 915 PSMD1 26S proteasome non-ATPase regulatory subunit 1 yes no 2 0.00061933 50.95 By MS/MS 2 0.93693 0.88985 7.0222 2 Median NaN NaN NaN 0 0 Median 0.93693 0.88985 7.0222 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7032900 3963900 3069000 0 0 0 7032900 3963900 3069000 0 0 0 0 0 0 0 0 0 0 0 0 39605 54 41592 210142;210143 213603 213603 1 YQPLASTASDNDFVTPEPR SQRAPSAKKPSTGSRYQPLASTASDNDFVT ASTASDNDFVTPEPRRTTRRHPNTQQRASK R Y Q P R R 2 1 1 2 0 1 1 0 0 0 1 0 0 1 3 2 2 0 1 1 0 0 19 0 2106.9858 Q15021 Q15021 1325 1343 NCAPD2 Condensin complex subunit 1 yes yes 2 4.9989E-18 111.74 By MS/MS By MS/MS By matching 1 1 1 0.59074 0.56134 6.6348 3 Median 0.59807 0.56134 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.53631 0.58991 NaN 1 0 Median 0.59074 0.51728 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19698000 11937000 7761000 13748000 8248600 5499900 0 0 0 5443400 3365800 2077600 506090 322580 183520 0 0 0 0 0 0 39606 2915 41593 210144;210145;210146 213604;213605;213606;213607 213604 4 YQPQQDMSQEGYGTR LPPQAQYLPSQSQQRYQPQQDMSQEGYGTR YQPQQDMSQEGYGTRSQPPLAPGKPNHEDL R Y Q T R S 0 1 0 1 0 4 1 2 0 0 0 0 1 0 1 1 1 0 2 0 0 0 15 0 1786.7581 A0A3F2YNW7;Q8NFD5;H0Y7H8;H0Y2R3;A0A1B0GU09;A0A1B0GV92;A0A1B0GU65 A0A3F2YNW7 721 735 ARID1B AT-rich interactive domain-containing protein 1B yes no 2 0.00035833 58.172 By MS/MS 1 0.78579 0.87053 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78579 0.87053 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3526300 1653300 1873000 0 0 0 0 0 0 3526300 1653300 1873000 0 0 0 0 0 0 0 0 0 39607 449 41594 210147 213608 213608 1 YQQAGLPLIVLAGK LPSGEILDVFDAAERYQQAGLPLIVLAGKE RYQQAGLPLIVLAGKEYGAGSSRDWAAKGP R Y Q G K E 2 0 0 0 0 2 0 2 0 1 3 1 0 0 1 0 0 0 1 1 0 0 14 0 1469.8606 P21399 P21399 759 772 ACO1 Cytoplasmic aconitate hydratase yes yes 2 0.00079859 60.102 By MS/MS By MS/MS By matching By matching 2 1 1 1 1.2188 1.0875 20.797 5 Median 1.1189 1.1166 40.212 2 0 Median 1.4065 1.2293 NaN 1 0 Median 1.0487 1.0875 NaN 1 0 Median 1.2188 1.0735 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11955000 5405600 6549100 5162900 2529300 2633600 5594800 2370300 3224500 850700 325860 524840 346210 180110 166100 0 0 0 0 0 0 39608 2090 41595 210148;210149;210150;210151;210152 213609;213610;213611;213612 213610 4 YQQFKDFQR IAIHRGMPQEERLSRYQQFKDFQRRILVAT EERLSRYQQFKDFQRRILVATNLFGRGMDI R Y Q Q R R 0 1 0 1 0 3 0 0 0 0 0 1 0 2 0 0 0 0 1 0 0 0 9 1 1258.6095 H0Y400;O00148;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3 Q13838 330 338 DDX39B;DDX39A ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B no no 2;3 0.00027318 120.15 By MS/MS By MS/MS By MS/MS 4 8 2 1.2002 1.1696 34.202 14 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1666 1.1101 40.138 4 1 Median 1.1005 1.2039 35.514 8 1 Median 1.272 1.1377 1.5462 2 0 Median 132290000 64566000 67726000 0 0 0 0 0 0 0 0 0 46725000 20820000 25905000 77538000 40608000 36930000 8029200 3138000 4891200 39609 2842;1441;1146 41596 210153;210154;210155;210156;210157;210158;210159;210160;210161;210162;210163;210164;210165;210166 213613;213614;213615;213616;213617;213618;213619 213617 7 YQQGDFGYCPR RYILTNRGIAQMLEKYQQGDFGYCPRVYCE MLEKYQQGDFGYCPRVYCENQPMLPIGLSD K Y Q P R V 0 1 0 1 1 2 0 2 0 0 0 0 0 1 1 0 0 0 2 0 0 0 11 0 1389.5772 Q5SRQ6;P67870;Q5SRQ3;N0E472;A0A0G2JM12 Q5SRQ6 120 130 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta yes no 2 0.00013837 87.308 By MS/MS 1 1.1238 0.95114 NaN 1 Median NaN NaN NaN 0 0 Median 1.1238 0.95114 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3329200 1662500 1666600 0 0 0 3329200 1662500 1666600 0 0 0 0 0 0 0 0 0 0 0 0 39610 2628 41597 210167 213620;213621 213620 2 YQQLFEDIR LKKLILSKGKTPALKYQQLFEDIRGQSDIA KTPALKYQQLFEDIRGQSDIAITKDMFEEA K Y Q I R G 0 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 9 0 1210.5982 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 770 778 MCM4 DNA replication licensing factor MCM4 yes no 2 0.024906 37.727 By MS/MS By matching 3 1 0.85688 0.72956 35.832 4 Median NaN NaN NaN 0 0 Median 0.99809 0.83724 20.153 3 0 Median NaN NaN NaN 0 0 Median 0.48783 0.42023 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17754000 9462600 8291400 0 0 0 16482000 8717900 7764500 0 0 0 1271600 744670 526960 0 0 0 0 0 0 39611 441 41598 210168;210169;210170;210171 213622;213623 213623 2 YQQLFEDIRGQSDIAITK LKKLILSKGKTPALKYQQLFEDIRGQSDIA LFEDIRGQSDIAITKDMFEEALRALADDDF K Y Q T K D 1 1 0 2 0 3 1 1 0 3 1 1 0 1 0 1 1 0 1 0 0 0 18 1 2124.0851 A0A3B3IU45;P33991;E5RG31;A0A3B3IT92;A0A3B3IS57 A0A3B3IU45 770 787 MCM4 DNA replication licensing factor MCM4 yes no 2;3 3.8724E-06 51.495 By MS/MS By matching By MS/MS 3 1 1 0.84329 0.95643 36.341 5 Median 0.98159 0.98775 9.936 3 0 Median 0.46962 0.42851 NaN 1 0 Median 0.84329 0.95643 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 41008000 21886000 19123000 32508000 17521000 14986000 242040 153250 88792 8258400 4211000 4047400 0 0 0 0 0 0 0 0 0 39612 441 41599 210172;210173;210174;210175;210176 213624;213625;213626;213627;213628 213625 5 YQQPFEDFR QLFHGRAREGSFESRYQQPFEDFRISQEHL GSFESRYQQPFEDFRISQEHLADHFDSRER R Y Q F R I 0 1 0 1 0 2 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 9 0 1228.5513 P19174;V9GY71;V9GYH5 P19174 1253 1261 PLCG1 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 yes no 2 0.00097351 87.616 By MS/MS By matching By matching 1 1 1 0.87808 0.82812 21.191 3 Median 0.87808 0.82812 NaN 1 0 Median 1.2797 1.0993 NaN 1 0 Median 0.66865 0.72614 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10586000 5103100 5482400 7259900 3485600 3774300 1841100 791740 1049300 1484500 825740 658810 0 0 0 0 0 0 0 0 0 39613 2062 41600 210177;210178;210179 213629 213629 1 YQQQYLQPLPLTHYELVTDAFGHR PDRRLRVDFADTEHRYQQQYLQPLPLTHYE PLTHYELVTDAFGHRAPDPLRGARDRTPPL R Y Q H R A 1 1 0 1 0 4 1 1 2 0 4 0 0 1 2 0 2 0 3 1 0 0 24 0 2916.4559 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37 A0A494C001 489 512 RBM15 Putative RNA-binding protein 15 yes no 3;4 5.6199E-38 113.5 By MS/MS By matching 4 1 0.97144 1.0391 15.828 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.86178 0.91798 16.733 4 1 Median 1.1958 1.0596 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27364000 13449000 13915000 0 0 0 0 0 0 27200000 13406000 13793000 164230 42272 121950 0 0 0 0 0 0 39614 60 41601 210180;210181;210182;210183;210184 213630;213631;213632 213632 3 YQSFNNQSDLEK HREFSFTLKDDIYIRYQSFNNQSDLEKEMQ YIRYQSFNNQSDLEKEMQKMNPYKIDIGAV R Y Q E K E 0 0 2 1 0 2 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 12 0 1471.6579 P49642;F8VSB2;F8VNY2 P49642 57 68 PRIM1 DNA primase small subunit;DNA primase yes no 2 1.2434E-05 97.813 By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1.0016 0.9186 38.326 4 Median 0.62599 0.62552 NaN 1 0 Median 1.3561 1.1566 NaN 1 0 Median 0.73981 0.72961 NaN 1 0 Median 1.5782 1.4163 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19122000 9600100 9522000 3754700 2569500 1185200 3693900 1671700 2022200 4817100 2779700 2037400 6856300 2579100 4277200 0 0 0 0 0 0 39615 2388 41602 210185;210186;210187;210188 213633;213634;213635;213636 213636 4 YQSHDYAFSSVEK MWVEDVLDKFMRIYRYQSHDYAFSSVEKLL YRYQSHDYAFSSVEKLLHALGGDDFLGMLN R Y Q E K L 1 0 0 1 0 1 1 0 1 0 0 1 0 1 0 3 0 0 2 1 0 0 13 0 1559.6892 Q9UHG3;F8W8W4;C9JM55;C9K055;C9JGT6 Q9UHG3 169 181 PCYOX1 Prenylcysteine oxidase 1 yes no 2;3 5.1937E-05 88.087 By MS/MS By MS/MS By matching By matching 4 2 1 1 1.1301 1.0232 18.818 8 Median 1.0443 0.98479 17.373 4 0 Median 1.4913 1.2687 4.9977 2 0 Median 1.1528 1.1756 NaN 1 0 Median 1.1659 1.0064 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43180000 19106000 24074000 27297000 12839000 14458000 13378000 5091700 8286100 1404100 722340 681750 1100800 452440 648380 0 0 0 0 0 0 39616 4279 41603 210189;210190;210191;210192;210193;210194;210195;210196 213637;213638;213639;213640;213641;213642;213643;213644 213639 8 YQTQPVTLGEVEQVQSGK TRNRIDTRQRRMNARYQTQPVTLGEVEQVQ QPVTLGEVEQVQSGKLIPFSPAVNTSVSTV R Y Q G K L 0 0 0 0 0 4 2 2 0 0 1 1 0 0 1 1 2 0 1 3 0 0 18 0 1990.0007 O95425 O95425 850 867 SVIL Supervillin yes yes 2 1.0253E-13 121.56 By matching By matching By MS/MS By MS/MS 1 1 1 1 0.73642 0.76171 23.569 4 Median 0.89762 0.86452 NaN 1 0 Median 1.1879 1.0469 NaN 1 0 Median 0.60417 0.67113 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.59564 0.62789 NaN 1 0 Median NaN NaN NaN 0 0 Median 13800000 7681100 6119300 3709300 1874200 1835100 181260 78243 103010 7038900 4197400 2841500 0 0 0 2871100 1531300 1339700 0 0 0 39617 1772 41604 210197;210198;210199;210200 213645;213646;213647 213645 3 YQVEYDAYK CTLYGISWQFDPCCKYQVEYDAYKLSRLPL FDPCCKYQVEYDAYKLSRLPLHTLTSSTPV K Y Q Y K L 1 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 3 1 0 0 9 0 1177.5292 P17152 P17152 134 142 TMEM11 Transmembrane protein 11, mitochondrial yes yes 2 0.0014358 81.548 By MS/MS By MS/MS 1 1 1.3447 1.212 5.8277 2 Median 1.2305 1.163 NaN 1 0 Median 1.4694 1.2629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9390800 3942100 5448700 6240000 2761100 3478900 3150800 1181000 1969800 0 0 0 0 0 0 0 0 0 0 0 0 39618 2037 41605 210201;210202 213648;213649;213650;213651 213651 4 YQVFFFGTHETAFLGPK IDEMPEAAVKSTANKYQVFFFGTHETAFLG VFFFGTHETAFLGPKDLFPYEESKEKFGKP K Y Q P K D 1 0 0 0 0 1 1 2 1 0 1 1 0 4 1 0 2 0 1 1 0 0 17 0 1987.9832 P51858 P51858 45 61 HDGF Hepatoma-derived growth factor yes yes 3 0.00013732 41.912 By matching By matching By MS/MS By MS/MS By matching 1 2 2 1 2 1.0911 0.93486 12.523 8 Median 0.75064 0.73551 NaN 1 0 Median 1.0911 0.92535 2.0053 2 0 Median 0.94237 0.94115 3.7343 2 0 Median 1.1026 0.93116 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3091 1.0827 8.5157 2 0 Median 28460000 14404000 14056000 937120 569750 367370 1224900 602350 622550 24064000 12109000 11955000 1709300 793780 915560 0 0 0 524060 329060 195000 39619 2444 41606 210203;210204;210205;210206;210207;210208;210209;210210 213652;213653;213654;213655;213656 213655 5 YQVNVDGTVAAYR GKAKLMGFFDFFKYKYQVNVDGTVAAYRYP YKYQVNVDGTVAAYRYPYLMLGDSLVLKQD K Y Q Y R Y 2 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 2 3 0 0 13 0 1454.7154 Q7Z4H8 Q7Z4H8 369 381 KDELC2 KDEL motif-containing protein 2 yes yes 2 3.4107E-08 123.63 By MS/MS 1 0.78135 0.74399 NaN 1 Median 0.78135 0.74399 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10719000 5745700 4973200 10719000 5745700 4973200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39620 3246 41607 210211 213657 213657 1 YQVSWSLDHK GGKQFPVTRGQDVGRYQVSWSLDHKSAHAG QDVGRYQVSWSLDHKSAHAGTYEVRFFDEE R Y Q H K S 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 2 0 1 1 1 0 0 10 0 1261.6091 P51571 P51571 86 95 SSR4 Translocon-associated protein subunit delta yes yes 2;3 0.00010926 120.15 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 2 2 1 1.2644 1.1242 10.452 11 Median 1.1602 1.0894 0.95911 2 0 Median 1.5448 1.3147 10.184 4 0 Median 1.2083 1.1523 3.4163 2 0 Median 1.2142 1.0058 5.8246 2 0 Median NaN NaN NaN 0 0 Median 1.4179 1.1242 NaN 1 0 Median 197340000 87357000 109990000 103580000 47581000 55998000 47687000 18909000 28779000 38131000 17404000 20727000 7079400 2944000 4135400 0 0 0 866480 518880 347600 39621 2435 41608 210212;210213;210214;210215;210216;210217;210218;210219;210220;210221;210222 213658;213659;213660;213661;213662;213663;213664;213665;213666;213667;213668;213669;213670;213671;213672 213658 15 YQWGIMK KGKKSKAAAKAGSSKYQWGIMKSLGLSDEE AAKAGSSKYQWGIMKSLGLSDEEIVKFSEA K Y Q M K S 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 0 7 0 924.45276 Q9P2J5 Q9P2J5 156 162 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.07339 34.892 By MS/MS By matching 1 2 1.0384 1.0411 11.41 3 Plateau 0.9682 0.95489 NaN 1 0 Median 1.1704 1.0191 15.236 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7600400 3491800 4108600 3511900 1681500 1830400 4088600 1810300 2278200 0 0 0 0 0 0 0 0 0 0 0 0 39622 4224 41609 210223;210224;210225 213673 213673 1 YQYGGLNSGRPVTPPR MCSFQILKPSEKKAKYQYGGLNSGRPVTPP QYGGLNSGRPVTPPRTANPPKKR_______ K Y Q P R T 0 2 1 0 0 1 0 3 0 0 1 0 0 0 3 1 1 0 2 1 0 0 16 1 1760.8958 P62140 P62140 304 319 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 2;3 2.5275E-10 103.39 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By matching 4 2 4 3 3 2 0.60696 0.63204 16.971 18 Median 0.53475 0.57569 29.07 4 0 Median 0.72942 0.64618 2.703 2 0 Median 0.5974 0.62475 2.7522 4 0 Median 0.71796 0.66999 5.8259 3 0 Median 0.61833 0.67058 15.741 3 0 Median 0.70611 0.61316 20.739 2 0 Median 305860000 187400000 118460000 132800000 81276000 51526000 16321000 9294400 7026600 81036000 51041000 29994000 50559000 29165000 21394000 24024000 16018000 8006500 1113800 604510 509250 39623 2570 41610 210226;210227;210228;210229;210230;210231;210232;210233;210234;210235;210236;210237;210238;210239;210240;210241;210242;210243 213674;213675;213676;213677;213678;213679;213680;213681;213682;213683;213684;213685;213686;213687;213688;213689;213690;213691;213692;213693 213693 20 YRCELLYEGPPDDEAAMGIK QMITIHLPSPVTAQKYRCELLYEGPPDDEA LYEGPPDDEAAMGIKSCDPKGPLMMYISKM K Y R I K S 2 1 0 2 1 0 3 2 0 1 2 1 1 0 2 0 0 0 2 0 0 0 20 1 2326.061 P13639 P13639 367 386 EEF2 Elongation factor 2 yes yes 3 0.00056232 29.126 By MS/MS 1 0.80807 0.83819 NaN 1 Median 0.80807 0.83819 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2194300 1147900 1046400 2194300 1147900 1046400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39624 1992 41611 210244 213694 213694 1 YRDHVTATQLIQK REDEKMCDHLIRAAKYRDHVTATQLIQKII AKYRDHVTATQLIQKIINILTDKHGAWGNS K Y R Q K I 1 1 0 1 0 2 0 0 1 1 1 1 0 0 0 0 2 0 1 1 0 0 13 1 1571.842 E9PEM5;A0A494C1L5;P50851;A0A494BZW2;H0YAC6 E9PEM5 1944 1956 LRBA Lipopolysaccharide-responsive and beige-like anchor protein yes no 3 0.00066453 63.8 By MS/MS By MS/MS By matching 1 1 1 1.4278 1.3227 26.442 3 Median 0.97876 1.0078 NaN 1 0 Median 1.4278 1.3227 NaN 1 1 Median 1.4816 1.7101 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17370000 7222900 10147000 4920900 2387000 2533800 11273000 4408000 6865100 1175700 427860 747820 0 0 0 0 0 0 0 0 0 39625 470 41612 210245;210246;210247 213695;213696;213697 213697 3 YRDPTTVTTLR DKRPEGYNLKEEDGRYRDPTTVTTLRVPVF EDGRYRDPTTVTTLRVPVFRPMDLMVEASP R Y R L R V 0 2 0 1 0 0 0 0 0 0 1 0 0 0 1 0 4 0 1 1 0 0 11 1 1321.699 P63151;A0A590UJY3 P63151 143 153 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes no 2;3 0.00071768 83.045 By MS/MS By MS/MS By matching 2 1 1 1.1179 1.0668 34.071 4 Median 1.1848 1.2353 18.338 2 0 Median 1.163 1.0488 NaN 1 0 Median 0.57596 0.6236 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29145000 14610000 14536000 20190000 9716400 10474000 6187300 3169500 3017800 2767800 1723700 1044000 0 0 0 0 0 0 0 0 0 39626 2619 41613 210248;210249;210250;210251 213698;213699 213698 2 YRDQIPSPGLMVFPK TMWVMLQTLNDEVPKYRDQIPSPGLMVFPK YRDQIPSPGLMVFPKPVTALEYTFSRSDPT K Y R P K P 0 1 0 1 0 1 0 1 0 1 1 1 1 1 3 1 0 0 1 1 0 0 15 1 1746.9127 P54709;C9JA36;C9JXZ1 P54709 72 86 ATP1B3 Sodium/potassium-transporting ATPase subunit beta-3 yes no 3 0.031131 18.138 By MS/MS By matching 1 1 0.74909 0.75326 23.677 2 Median 0.83147 0.89054 NaN 1 0 Median 0.67487 0.63714 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2571700 1559500 1012100 2349600 1443700 905840 222110 115830 106280 0 0 0 0 0 0 0 0 0 0 0 0 39627 2485 41614 210252;210253 213700 213700 1 YRDVSPFDHSR PCRVAKLPKNKNRNRYRDVSPFDHSRIKLH NRNRYRDVSPFDHSRIKLHQEDNDYINASL R Y R S R I 0 2 0 2 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 0 11 1 1377.6426 P18031 P18031 46 56 PTPN1 Tyrosine-protein phosphatase non-receptor type 1 yes yes 3 5.6447E-05 94.767 By MS/MS By MS/MS By MS/MS 1 1 1 1.0579 1.0683 14.21 3 Median 1.0579 1.0683 NaN 1 0 Median 1.2773 1.1519 NaN 1 0 Median 0.80809 0.87493 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7422200 3667000 3755200 4332000 2273200 2058800 2063600 864340 1199300 1026600 529450 497130 0 0 0 0 0 0 0 0 0 39628 2052 41615 210254;210255;210256 213701;213702;213703;213704;213705 213701 5 YREDYIEPALYR EVKQEKKRQRVINSRYREDYIEPALYRAIM NSRYREDYIEPALYRAIME___________ R Y R Y R A 1 2 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 3 0 0 0 12 1 1586.7729 O75164 O75164 1049 1060 KDM4A Lysine-specific demethylase 4A yes yes 3 1.7585E-05 94.767 By MS/MS 1 0.96173 1.1697 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96173 1.1697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2966000 1644500 1321400 0 0 0 0 0 0 2966000 1644500 1321400 0 0 0 0 0 0 0 0 0 39629 1652 41616 210257 213706;213707 213707 2 YRELGNIIQK ECLMQAIDAVKPGVRYRELGNIIQKHAQAN KPGVRYRELGNIIQKHAQANGFSVVRSYCG R Y R Q K H 0 1 1 0 0 1 1 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 10 1 1232.6877 P53582;H0Y955 P53582 269 278 METAP1 Methionine aminopeptidase 1 yes no 2 0.0016754 83.647 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 2 1.2503 1.2783 8.0978 6 Median 1.2666 1.3571 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1168 1.2748 NaN 1 0 Median 1.3474 1.1679 NaN 1 0 Median 1.2068 1.3176 NaN 1 0 Median 1.3259 1.1843 11.178 2 0 Median 87179000 40544000 46635000 9401300 4327300 5073900 0 0 0 36603000 17719000 18883000 9384700 3980800 5403900 17131000 7749900 9381100 14659000 6766700 7892600 39630 2468 41617 210258;210259;210260;210261;210262;210263 213708;213709;213710;213711;213712;213713 213710 6 YRENIASLMDK DNLKDPKYVRDSKIRYRENIASLMDKCFPE SKIRYRENIASLMDKCFPEKNKPGEIAKYM R Y R D K C 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 11 1 1338.6602 Q99986;H0YJ50;H0YJJ9 Q99986 278 288 VRK1 Serine/threonine-protein kinase VRK1 yes no 2;3 8.4706E-12 143.97 By MS/MS By MS/MS 3 3 0.98423 0.96983 115.12 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93472 0.94545 5.8086 3 0 Median 1.107 1.0625 160.61 3 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 459250000 62606000 396650000 0 0 0 0 0 0 43778000 24202000 19576000 415480000 38403000 377070000 0 0 0 0 0 0 39631 3775 41618;41619 210264;210265;210266;210267;210268;210269 213714;213715;213716;213717;213718;213719 213719 1826 5 YREWHHFLVVNMK LVLTDPDAPSRKDPKYREWHHFLVVNMKGN PKYREWHHFLVVNMKGNDISSGTVLSDYVG K Y R M K G 0 1 1 0 0 0 1 0 2 0 1 1 1 1 0 0 0 1 1 2 0 0 13 1 1757.8824 P30086 P30086 81 93 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3;4 3.1152E-07 113.65 By MS/MS By MS/MS By matching 4 4 1 1.232 1.1963 19.74 9 Median 1.2808 1.3267 10.145 4 0 Linear 1.44 1.332 10.758 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6855 0.77016 NaN 1 0 Median NaN NaN NaN 0 0 Median 300940000 128470000 172460000 268180000 116160000 152020000 31545000 11601000 19944000 0 0 0 0 0 0 1212000 710480 501520 0 0 0 39632 2188 41620;41621 210270;210271;210272;210273;210274;210275;210276;210277;210278 213720;213721;213722;213723;213724;213725;213726;213727;213728;213729;213730;213731;213732;213733;213734;213735 213724 927 16 YRGFTIPEAFR NLLPKLHIVQVVCKKYRGFTIPEAFRGVHR VCKKYRGFTIPEAFRGVHRYLSNAYAREEF K Y R F R G 1 2 0 0 0 0 1 1 0 1 0 0 0 2 1 0 1 0 1 0 0 0 11 1 1355.6986 O00299 O00299 194 204 CLIC1 Chloride intracellular channel protein 1 yes yes 2;3 0.008057 79.148 By MS/MS 2 1.2605 1.357 24.772 2 Median 1.2605 1.357 24.772 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12617000 5219600 7397700 12617000 5219600 7397700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39633 1456 41622 210279;210280 213736;213737 213736 2 YRGQHVTGSPFQFTVGPLGEGGAHK RFVPQEMGVHTVSVKYRGQHVTGSPFQFTV FQFTVGPLGEGGAHKVRAGGPGLERGEAGV K Y R H K V 1 1 0 0 0 2 1 6 2 0 1 1 0 2 2 1 2 0 1 2 0 0 25 1 2626.3041 O75369;E7EN95;H7C5L4 O75369 2171 2195 FLNB Filamin-B yes no 3;4 1.4411E-12 52.79 By MS/MS By matching 3 1 0.86971 0.88975 21.84 4 Median 0.90972 0.93536 11.323 3 0 Plateau NaN NaN NaN 0 0 Median 1.0588 1.2697 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35651000 18063000 17588000 29839000 14964000 14876000 0 0 0 5811700 3099700 2712000 0 0 0 0 0 0 0 0 0 39634 1664 41623 210281;210282;210283;210284 213738;213739 213738 1 YRGSIHDFPGFDPNQDAEALYTAMK ______________________________ FDPNQDAEALYTAMKGFGSDKEAILDIITS K Y R M K G 3 1 1 3 0 1 1 2 1 1 1 1 1 2 2 1 1 0 2 0 0 0 25 1 2842.3021 E5RK69;E5RFF0;E5RIU8;E5RJR0;P08133;E7EMC6;E5RI05 P08133 10 34 ANXA6 Annexin;Annexin A6 no no 4 0.068397 6.3637 By MS/MS 1 0.73521 0.74619 NaN 1 Median 0.73521 0.74619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1494800 825940 668860 1494800 825940 668860 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39635 1898;854 41624 210285 213740 213740 1 YRGSVHFGLVR GSQRLLFSHDLVSGRYRGSVHFGLVRLIHG VSGRYRGSVHFGLVRLIHGEDSDSEGEEEG R Y R V R L 0 2 0 0 0 0 0 2 1 0 1 0 0 1 0 1 0 0 1 2 0 0 11 1 1289.6993 Q9C0C9 Q9C0C9 70 80 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O yes yes 3 0.01656 40.616 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39636 3904 41625 210286 213741 213741 1 YRHDENILESEPIVYR SGTRSRGIPNERPTRYRHDENILESEPIVY RHDENILESEPIVYRRIIVPHNVSKEFCTD R Y R Y R R 0 2 1 1 0 0 3 0 1 2 1 0 0 0 1 1 0 0 2 1 0 0 16 1 2032.0014 Q96F86;H3BSQ0;H3BPN4 Q96F86 244 259 EDC3 Enhancer of mRNA-decapping protein 3 yes no 3;4 4.2097E-05 51.888 By MS/MS 2 0.79039 0.85368 7.8857 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.79039 0.85368 7.8857 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8503600 4763300 3740300 0 0 0 0 0 0 8503600 4763300 3740300 0 0 0 0 0 0 0 0 0 39637 3648 41626 210287;210288 213742;213743 213742 1 YRPGTVALR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ VKKPHRYRPGTVALREIRRYQKSTELLIRK R Y R L R E 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 9 1 1031.5876 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 42 50 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 2 6.9404E-10 172.94 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 6 5 5 7 16 13 0.98395 0.96723 19.233 52 Median 0.79545 0.81346 36.254 6 0 Median 1.0912 1.0879 14.496 5 0 Median 0.78351 0.86107 4.4801 5 0 Median 1.2265 1.143 12.809 7 0 Median 0.81387 0.89217 7.852 16 0 Median 1.1688 1.0235 10.82 13 0 Median 16844000000 8582200000 8261600000 48393000 25476000 22917000 66797000 27349000 39447000 190620000 104220000 86399000 47922000 19386000 28536000 10516000000 5730300000 4785400000 5974400000 2675500000 3298900000 39638 1366;3104 41627 210289;210290;210291;210292;210293;210294;210295;210296;210297;210298;210299;210300;210301;210302;210303;210304;210305;210306;210307;210308;210309;210310;210311;210312;210313;210314;210315;210316;210317;210318;210319;210320;210321;210322;210323;210324;210325;210326;210327;210328;210329;210330;210331;210332;210333;210334;210335;210336;210337;210338;210339;210340 213744;213745;213746;213747;213748;213749;213750;213751;213752;213753;213754;213755;213756;213757;213758;213759;213760;213761;213762;213763;213764;213765;213766;213767;213768;213769;213770;213771;213772;213773;213774;213775;213776;213777;213778;213779;213780;213781;213782;213783;213784;213785;213786;213787;213788;213789;213790;213791;213792;213793;213794;213795;213796;213797;213798;213799;213800;213801;213802;213803;213804;213805;213806;213807;213808 213758 65 YRPGTVALREIR RKSAPSTGGVKKPHRYRPGTVALREIRRYQ PHRYRPGTVALREIRRYQKSTELLIRKLPF R Y R I R R 1 3 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 1 1 0 0 12 2 1429.8154 K7EK07;Q71DI3;P84243;P68431;Q16695;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q6NXT2;K7EP01;Q5TEC6 K7EK07 42 53 H3F3B;HIST2H3A;H3F3A;HIST1H3A;HIST3H3;H3F3C;HIST2H3PS2 Histone H3;Histone H3.2;Histone H3.3;Histone H3.1;Histone H3.1t;Histone H3.3C no no 3 1.7522E-06 99.531 By MS/MS By MS/MS 4 1 0.89101 1.0913 11.816 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87172 1.0638 13.643 4 0 Median 1.1851 1.0913 NaN 1 0 Median 146330000 76821000 69507000 0 0 0 0 0 0 0 0 0 0 0 0 138680000 73340000 65339000 7649400 3480800 4168600 39639 1366;3104 41628 210341;210342;210343;210344;210345 213809;213810;213811;213812;213813;213814;213815;213816;213817 213812 8 YRPLFDYFLK EILERFPGAYLKGKKYRPLFDYFLKCKENG LKGKKYRPLFDYFLKCKENGAFTVLVDNYV K Y R L K C 0 1 0 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 2 0 0 0 10 1 1360.718 P41252;A0A0A0MSX9;J3KR24;Q5TCD1 P41252 289 298 IARS Isoleucine--tRNA ligase, cytoplasmic yes no 3 0.014205 29.743 By MS/MS By matching By matching 1 1 1 1.1012 1.0911 7.254 3 Plateau 1.1012 1.1398 NaN 1 0 Median 1.0958 1.0444 NaN 1 0 Median 0.85769 0.98694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3002100 1383000 1619100 1530900 663730 867220 1299800 635600 664200 171350 83649 87701 0 0 0 0 0 0 0 0 0 39640 2302 41629 210346;210347;210348 213818;213819 213818 2 YRPQTLNDLISHQDILSTIQK QPAATKIRNLPWVEKYRPQTLNDLISHQDI NDLISHQDILSTIQKFINEDRLPHLLLYGP K Y R Q K F 0 1 1 2 0 3 0 0 1 3 3 1 0 0 1 2 2 0 1 0 0 0 21 1 2482.318 P40937;C9JH72;F5H304;F5H0U6 P40937 26 46 RFC5 Replication factor C subunit 5 yes no 3;4 2.5087E-12 74.776 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 2 2 1 2 1.0134 1.0199 39.436 11 Median 1.0009 1.0723 1.7473 2 0 Median 0.99032 0.93524 18.479 2 0 Median 0.88649 0.96028 5.9425 2 0 Median 0.64328 0.55497 76.185 2 0 Median 1.2623 1.3812 NaN 1 0 Median 1.3692 1.2197 25.3 2 1 Median 159610000 79099000 80513000 15470000 7114400 8355200 28436000 12902000 15534000 38700000 19599000 19100000 40949000 22799000 18150000 25205000 11019000 14186000 10853000 5664800 5188100 39641 2293 41630 210349;210350;210351;210352;210353;210354;210355;210356;210357;210358;210359 213820;213821;213822;213823;213824;213825;213826;213827;213828;213829;213830;213831;213832;213833 213833 14 YRPYDGAASAYAQNYR ASLYYQDVYSLYEPRYRPYDGAASAYAQNY RPYDGAASAYAQNYRYPEPERPSSRASHSS R Y R Y R Y 4 2 1 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 4 0 0 0 16 1 1864.8493 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1 O15027 1199 1214 SEC16A Protein transport protein Sec16A yes no 2;3 1.4665E-11 109.79 By MS/MS By matching 2 1 0.79877 0.85421 6.5907 3 Plateau 0.78547 0.83999 2.3744 2 0 Median NaN NaN NaN 0 0 Median 0.59545 0.7522 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32900000 17847000 15053000 29570000 15647000 13923000 0 0 0 3330200 2199700 1130500 0 0 0 0 0 0 0 0 0 39642 1513 41631 210360;210361;210362 213834;213835;213836;213837 213834 4 YRQFPQLTR HFSYSAGGGVHIEPRYRQFPQLTRSQVFQS VHIEPRYRQFPQLTRSQVFQSEFFSGLMWF R Y R T R S 0 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 9 1 1207.6462 C9IZW8;C9JXM4;H7C5B8;O95178 C9IZW8 17 25 NDUFB2 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial yes no 2;3 0.00033826 94.302 By MS/MS 2 0.70699 0.70538 NaN 1 Median 0.70699 0.70538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17927000 7347300 10580000 17927000 7347300 10580000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39643 665 41632 210363;210364 213838;213839;213840 213839 3 YRQQFEELYK YADCVDKLEKELVSKYRQQFEELYKTEAPT ELVSKYRQQFEELYKTEAPTWETHGNLMTE K Y R Y K T 0 1 0 0 0 2 2 0 0 0 1 1 0 1 0 0 0 0 2 0 0 0 10 1 1402.6881 Q5SRE5 Q5SRE5 173 182 NUP188 Nucleoporin NUP188 homolog yes yes 2 0.022686 51.949 By MS/MS 1 0.66431 0.79627 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.66431 0.79627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12114000 5648600 6464900 0 0 0 0 0 0 12114000 5648600 6464900 0 0 0 0 0 0 0 0 0 39644 3074 41633 210365 213841 213841 1 YRQTTQDAPEEVR KQYSSRDLPSHTKIKYRQTTQDAPEEVRNR IKYRQTTQDAPEEVRNRDFRRELEERERAA K Y R V R N 1 2 0 1 0 2 2 0 0 0 0 0 0 0 1 0 2 0 1 1 0 0 13 1 1591.759 Q9P013 Q9P013 43 55 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 3 0.040202 18.731 By MS/MS 1 1.0775 1.0055 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0775 1.0055 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 518630 255880 262750 0 0 0 0 0 0 0 0 0 518630 255880 262750 0 0 0 0 0 0 39645 4196 41634 210366 213842 213842 1 YRSDGALLLGASSLSGR PNAPACMERQLEAARYRSDGALLLGASSLS SDGALLLGASSLSGRCWAGSLWLFKDPCAA R Y R G R C 2 2 0 1 0 0 0 3 0 0 4 0 0 0 0 4 0 0 1 0 0 0 17 1 1721.906 Q9BQA1 Q9BQA1 36 52 WDR77 Methylosome protein 50 yes yes 3 0.00067414 36.112 By MS/MS 1 0.99191 1.0437 NaN 1 Median 0.99191 1.0437 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4616700 2169100 2447600 4616700 2169100 2447600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39646 3787 41635 210367 213843 213843 1 YRTEAHQDVVGR SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE HSRYRTEAHQDVVGRFNERFILSLASCKKC R Y R G R F 1 2 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 2 0 0 12 1 1429.7062 Q9H0A0;A0A087WV29;E9PMU0 Q9H0A0 171 182 NAT10 N-acetyltransferase 10 yes no 3 0.00068836 49.423 By MS/MS By MS/MS By MS/MS 1 2 1 1.3471 1.4218 14.307 4 Median NaN NaN NaN 0 0 Median 1.6036 1.546 NaN 1 0 Median 1.0572 1.2533 6.0065 2 1 Median 1.668 1.6329 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3272200 1422200 1850000 0 0 0 1522900 585180 937760 1430400 700480 729900 318890 136530 182360 0 0 0 0 0 0 39647 3921 41636 210368;210369;210370;210371 213844;213845;213846;213847 213846 4 YRVPDVLVADPPIAR MTRFRIDELEPRRPRYRVPDVLVADPPIAR YRVPDVLVADPPIARLSVSGRDENSVELTM R Y R A R L 2 2 0 2 0 0 0 0 0 1 1 0 0 0 3 0 0 0 1 3 0 0 15 1 1679.9359 Q14697;F5H6X6 Q14697 113 127 GANAB Neutral alpha-glucosidase AB yes no 2;3 0.00011716 63.709 By MS/MS By MS/MS 6 3 0.64094 0.70051 13.744 9 Median 0.61593 0.6436 9.2729 6 0 Median 0.9095 0.87684 7.3644 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 98403000 57231000 41172000 85550000 50566000 34985000 12853000 6665400 6187200 0 0 0 0 0 0 0 0 0 0 0 0 39648 2896 41637 210372;210373;210374;210375;210376;210377;210378;210379;210380 213848;213849;213850;213851;213852;213853;213854;213855 213850 8 YSAEMPQLPQDLK EIPDVPEKSEYLEVKYSAEMPQLPQDLKGE VKYSAEMPQLPQDLKGETFSHVFGTNTSSL K Y S L K G 1 0 0 1 0 2 1 0 0 0 2 1 1 0 2 1 0 0 1 0 0 0 13 0 1518.7388 A0A087WU64;A6NMQ1;P09884 A0A087WU64 457 469 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit yes no 2 0.004339 58.592 By MS/MS 1 1.7529 1.6968 NaN 1 Median 1.7529 1.6968 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10116000 3936500 6179100 10116000 3936500 6179100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39649 26 41638 210381 213856 213856 1 YSAHSSHVTNVSFTHNDSHLISTGGK LFQYPCSKAKAPSHKYSAHSSHVTNVSFTH SFTHNDSHLISTGGKDMSIIQWKLVEKLSL K Y S G K D 1 0 2 1 0 0 0 2 4 1 1 1 0 1 0 6 3 0 1 2 0 0 26 0 2782.3059 Q9HC35;B5MBZ0 Q9HC35 830 855 EML4 Echinoderm microtubule-associated protein-like 4 yes no 4;5 2.9345E-28 96.679 By MS/MS By MS/MS By MS/MS 4 3 4 1.225 1.0617 22.453 11 Median 0.8578 0.84112 10.819 4 0 Median 1.2834 1.1422 14.076 3 0 Median NaN NaN NaN 0 0 Median 1.2369 1.076 18.157 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 75717000 36213000 39505000 25709000 14279000 11429000 28279000 13010000 15269000 0 0 0 21729000 8923600 12806000 0 0 0 0 0 0 39650 4024 41639 210382;210383;210384;210385;210386;210387;210388;210389;210390;210391;210392 213857;213858;213859;213860;213861;213862;213863;213864;213865 213864 8 YSALNVQHQMLK AQETLNKGRQDSNSRYSALNVQHQMLKSQH NSRYSALNVQHQMLKSQHEELKKQHSDLEE R Y S L K S 1 0 1 0 0 2 0 0 1 0 2 1 1 0 0 1 0 0 1 1 0 0 12 0 1430.734 O00461;F8W785 O00461 111 122 GOLIM4 Golgi integral membrane protein 4 yes no 3 0.0032058 36.447 By MS/MS 1 1.2245 1.1926 NaN 1 Median 1.2245 1.1926 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5703500 2694300 3009200 5703500 2694300 3009200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39651 1466 41640 210393 213866 213866 1 YSAQTDITDDSLDR PHAATASPPTDGTTRYSAQTDITDDSLDRK RYSAQTDITDDSLDRKSPASSFSHSTPSGN R Y S D R K 1 1 0 4 0 1 0 0 0 1 1 0 0 0 0 2 2 0 1 0 0 0 14 0 1598.706 E9PGC8;P78559 E9PGC8 1511 1524 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 yes no 2 0.039665 67.022 By MS/MS By MS/MS 1 1 1.2096 1.1347 40.509 2 Median 0.84161 0.85206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.7385 1.511 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3508900 1676000 1832900 2891200 1473500 1417700 0 0 0 0 0 0 617700 202500 415200 0 0 0 0 0 0 39652 923 41641 210394;210395 213867;213868 213867 0 YSDADIEPFLK NTKEGLAELYEYKKKYSDADIEPFLKNSSQ YKKKYSDADIEPFLKNSSQFFQSYVERGLR K Y S L K N 1 0 0 2 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 11 0 1296.6238 Q14008;H0YDX5 Q14008 1860 1870 CKAP5 Cytoskeleton-associated protein 5 yes no 2 0.0031605 73.985 By MS/MS 1 1.1121 1.226 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1121 1.226 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16017000 7445400 8571700 0 0 0 0 0 0 16017000 7445400 8571700 0 0 0 0 0 0 0 0 0 39653 2850 41642 210396 213869 213869 1 YSDFEWLR NLPIFKLKESTVRRRYSDFEWLRSELERES ESTVRRRYSDFEWLRSELERESKVVVPPLP R Y S L R S 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 8 0 1114.5084 O60493 O60493 71 78 SNX3 Sorting nexin-3 yes yes 2 0.0054254 75.854 By MS/MS By MS/MS By matching By matching By matching 1 1 1 1 1 1.1909 0.99982 15.867 5 Median 1.0739 1.0394 NaN 1 0 Median 1.1909 0.98902 NaN 1 0 Median 1.4458 1.3724 NaN 1 0 Median 1.2309 0.99982 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1452 0.90244 NaN 1 0 Median 18448000 8495000 9952700 13539000 6338100 7201100 1802700 826100 976570 2848900 1218200 1630700 134580 65163 69418 0 0 0 122350 47347 74998 39654 1616 41643 210397;210398;210399;210400;210401 213870;213871;213872;213873 213871 4 YSDFVVHEIGKDGR FVSSHQGFSGILKERYSDFVVHEIGKDGRI RYSDFVVHEIGKDGRISHLNDLSIPVDEED R Y S G R I 0 1 0 2 0 0 1 2 1 1 0 1 0 1 0 1 0 0 1 2 0 0 14 1 1620.7896 Q96PZ0;E7EUH7;H0Y863 Q96PZ0 134 147 PUS7 Pseudouridylate synthase 7 homolog yes no 3 0.0051981 29.912 By MS/MS By matching 1 1 0.90143 0.97199 12.518 2 Median 0.86869 0.88966 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.93541 1.0619 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4124500 2449900 1674600 2607600 1452200 1155400 0 0 0 1516900 997720 519190 0 0 0 0 0 0 0 0 0 39655 3716 41644 210402;210403 213874 213874 1 YSDLLSQSLNQPLTSSK ALDLHLDFIVGQTEKYSDLLSQSLNQPLTS DLLSQSLNQPLTSSKAGSSPCLGSSSAASS K Y S S K A 0 0 1 1 0 2 0 0 0 0 4 1 0 0 1 5 1 0 1 0 0 0 17 0 1879.9527 Q6ZRS2;A0A0A0MS59;A0A0C4DFX4 Q6ZRS2 243 259 SRCAP Helicase SRCAP yes no 2 2.1129E-13 115.57 By MS/MS By matching 1 1 0.92462 0.91651 2.5785 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8411 0.89995 NaN 1 0 Median 1.0164 0.93337 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9475200 5404000 4071200 0 0 0 0 0 0 9155600 5260200 3895400 319580 143760 175820 0 0 0 0 0 0 39656 3199 41645 210404;210405 213875;213876 213876 2 YSDLTTLVAFPSSSVYPTK SVHYCPATKKTIERRYSDLTTLVAFPSSSV TTLVAFPSSSVYPTKDEENNPLETEYGLSV R Y S T K D 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 4 3 0 2 2 0 0 19 0 2075.0463 P25205;J3KQ69;A0A499FHX9 P25205 159 177 MCM3 DNA replication licensing factor MCM3 yes no 2 0.043623 20.663 By matching By MS/MS By matching 1 1 1 0.71376 0.62761 21.896 3 Median NaN NaN NaN 0 0 Median 1.0145 0.91514 NaN 1 0 Median 0.58541 0.62761 NaN 1 0 Median 0.71376 0.625 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2976400 1899000 1077400 0 0 0 637890 294990 342910 2265700 1570100 695620 72740 33887 38853 0 0 0 0 0 0 39657 2129 41646 210406;210407;210408 213877 213877 1 YSDMIVAAIQAEK PKRAKASKKSTDHPKYSDMIVAAIQAEKNR PKYSDMIVAAIQAEKNRAGSSRQSIQKYIK K Y S E K N 3 0 0 1 0 1 1 0 0 2 0 1 1 0 0 1 0 0 1 1 0 0 13 0 1437.7174 P07305 P07305 28 40 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 1.0432E-06 98.353 By matching By MS/MS By matching By MS/MS By matching 1 2 1 8 2 0.78385 0.7929 46.077 12 Median 1.7411 1.722 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.75787 0.72698 7.9028 2 1 Median 3.3585 2.7473 NaN 1 0 Median 0.76149 0.78279 4.4255 6 2 Median 1.8726 1.5415 9.2588 2 0 Median 218330000 119860000 98475000 978540 503310 475240 0 0 0 9258700 4906900 4351800 292040 69309 222730 197760000 110960000 86798000 10040000 3412800 6627400 39658 1884 41647;41648 210409;210410;210411;210412;210413;210414;210415;210416;210417;210418;210419;210420;210421;210422 213878;213879;213880;213881;213882;213883;213884;213885;213886;213887;213888;213889;213890;213891;213892;213893;213894;213895;213896;213897;213898;213899 213889 651 22 YSEAITQSVLK APILQNIGQLGLLARYSEAITQSVLKELQN LLARYSEAITQSVLKELQNRRAGPATSPPK R Y S L K E 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1237.6554 O60287 O60287 1075 1085 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00017674 105.2 By MS/MS By matching By MS/MS By MS/MS 2 1 1 1 1.0916 1.1663 41.816 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.71131 0.74635 68.647 2 1 Median 1.016 0.87526 NaN 1 0 Median 1.1098 1.1663 NaN 1 0 Median 1.4307 1.2263 NaN 1 1 Median 40732000 24271000 16461000 0 0 0 0 0 0 34114000 21256000 12859000 1657300 764540 892790 3750600 1804500 1946100 1209500 446240 763270 39659 1610 41649 210423;210424;210425;210426;210427 213900;213901;213902 213901 3 YSEEGVYNVQYSFIK KKEVEMKGVWSMPSKYSEEGVYNVQYSFIK YSEEGVYNVQYSFIKEAEHHCLLHSPIPVN K Y S I K E 0 0 1 0 0 1 2 1 0 1 0 1 0 1 0 2 0 0 3 2 0 0 15 0 1824.857 Q9NUJ1 Q9NUJ1 209 223 ABHD10 Mycophenolic acid acyl-glucuronide esterase, mitochondrial yes yes 2 0.004567 49.5 By MS/MS 1 1.0812 1.0457 NaN 1 Median 1.0812 1.0457 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3656000 1841600 1814400 3656000 1841600 1814400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39660 4115 41650 210428 213903 213903 1 YSEFTSTTSGTGHNQTR EEYRKWACLVAGGSKYSEFTSTTSGTGHNQ EFTSTTSGTGHNQTRALRASESGI______ K Y S T R A 0 1 1 0 0 1 1 2 1 0 0 0 0 1 0 3 5 0 1 0 0 0 17 0 1872.8238 P48960 P48960 810 826 CD97 CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta yes yes 3 0.00010653 44.045 By MS/MS 1 1.0017 0.84752 NaN 1 Median NaN NaN NaN 0 0 Median 1.0017 0.84752 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1437700 717750 719990 0 0 0 1437700 717750 719990 0 0 0 0 0 0 0 0 0 0 0 0 39661 2369 41651 210429 213904 213904 1 YSEKEDKYEEEIK NVTNNLKSLEAASEKYSEKEDKYEEEIKLL EKYSEKEDKYEEEIKLLSDKLKEAETRAEF K Y S I K L 0 0 0 1 0 0 5 0 0 1 0 3 0 0 0 1 0 0 2 0 0 0 13 2 1688.7781 P67936;A0A2R8Y5V9;A0A2R8YH90;A0A2R8YE05;K7ENT6;A0A2R8YHD2;K7EPB9 P67936 178 190 TPM4 Tropomyosin alpha-4 chain yes no 3;4 0.00027875 63.76 By MS/MS By MS/MS By matching By MS/MS 3 3 3 2 0.90144 0.93041 12.646 11 Median 0.98872 1.0328 5.1008 3 0 Median 0.85201 0.83374 5.0647 3 0 Median 0.90144 0.93041 3.1015 3 0 Median 0.86925 0.82287 21.421 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32563000 16213000 16350000 17319000 8465600 8853600 8054300 4091300 3963100 4643100 2431800 2211300 2546300 1224700 1321600 0 0 0 0 0 0 39662 2629 41652 210430;210431;210432;210433;210434;210435;210436;210437;210438;210439;210440 213905;213906;213907;213908;213909;213910;213911;213912 213907 8 YSELTTVQQQLIR KFFCFQVLEHQVKYKYSELTTVQQQLIRET YKYSELTTVQQQLIRETLISWLQAQMLNPQ K Y S I R E 0 1 0 0 0 3 1 0 0 1 2 0 0 0 0 1 2 0 1 1 0 0 13 0 1577.8413 O43592;F8WDU6 O43592 68 80 XPOT Exportin-T yes no 2 1.2317E-06 123.88 By MS/MS By matching 1 1 1.2299 1.1527 6.628 2 Median 1.1412 1.0999 NaN 1 0 Median 1.3256 1.208 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10268000 4754200 5514000 9554500 4439500 5115000 713790 314710 399080 0 0 0 0 0 0 0 0 0 0 0 0 39663 1576 41653 210441;210442 213913;213914 213914 2 YSELVQNHADLLR KAQANEQRYSKLKEKYSELVQNHADLLRKN EKYSELVQNHADLLRKNAEVTKQVSMARQA K Y S L R K 1 1 1 1 0 1 1 0 1 0 3 0 0 0 0 1 0 0 1 1 0 0 13 0 1556.7947 O00291 O00291 475 487 HIP1 Huntingtin-interacting protein 1 yes yes 3 0.00376 34.179 By matching By matching By MS/MS 1 1 1 1.4682 1.4606 7.2292 3 Plateau NaN NaN NaN 0 0 Median 1.4682 1.2978 NaN 1 0 Median 1.3669 1.461 NaN 1 0 Median 1.4981 1.2815 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3452000 1521200 1930700 0 0 0 801210 408060 393150 1944700 826140 1118600 706060 287040 419020 0 0 0 0 0 0 39664 1455 41654 210443;210444;210445 213915 213915 1 YSESAGGFYYVESGK VCSIGTANAVAGAVKYSESAGGFYYVESGK YSESAGGFYYVESGKLFSVTRNRFIHWKTS K Y S G K L 1 0 0 0 0 0 2 3 0 0 0 1 0 1 0 3 0 0 3 1 0 0 15 0 1642.7151 Q12769;G3V198;E9PR16;E9PSI3 Q12769 79 93 NUP160 Nuclear pore complex protein Nup160 yes no 2 3.7265E-06 89.301 By MS/MS By MS/MS 1 3 1.0872 1.2837 24.318 4 Linear NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.046 1.1156 NaN 1 0 Median 1.232 1.0529 25.637 3 2 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23110000 11065000 12045000 0 0 0 0 0 0 17816000 8781800 9033800 5294400 2283400 3011000 0 0 0 0 0 0 39665 2756 41655 210446;210447;210448;210449 213916;213917;213918;213919 213917 4 YSESLLGVPIAYDNIK KRTGIREQLDAELLRYSESLLGVPIAYDNI SESLLGVPIAYDNIKVVGELGDIYDDQGHI R Y S I K V 1 0 1 1 0 0 1 1 0 2 2 1 0 0 1 2 0 0 2 1 0 0 16 0 1780.9247 Q3B726 Q3B726 82 97 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 0.027405 37.18 By MS/MS 1 0.81903 0.84598 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81903 0.84598 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17196000 8948200 8247600 0 0 0 0 0 0 17196000 8948200 8247600 0 0 0 0 0 0 0 0 0 39666 3009 41656 210450 213920 213920 1 YSETDADPHNARR NDIFEWSRDHRAHHKYSETDADPHNARRGF HKYSETDADPHNARRGFFFSHIGWLFVRKH K Y S R R G 2 2 1 2 0 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 13 1 1530.6811 Q86SK9 Q86SK9 137 149 SCD5 Stearoyl-CoA desaturase 5 yes yes 3 0.073656 7.5443 By MS/MS By matching By matching 2 1 2 1.5871 1.3809 11.796 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6222 1.3917 1.1075 2 0 Median 1.5871 1.7836 NaN 1 0 Median 1.5927 1.3573 2.3827 2 0 Median 4170200 1582200 2588000 0 0 0 0 0 0 0 0 0 1649000 653170 995840 1146900 449560 697310 1374400 479460 894890 39667 3263 41657 210451;210452;210453;210454;210455 213921 213921 1 YSEVFEAINITNNEK NQDDYQLVRKLGRGKYSEVFEAINITNNEK YSEVFEAINITNNEKVVVKILKPVKKKKIK K Y S E K V 1 0 3 0 0 0 3 0 0 2 0 1 0 1 0 1 1 0 1 1 0 0 15 0 1769.8472 P68400;E7EU96;A0A2R8YD58;A0A2R8YF43;A0A2R8Y5A0;A0A2R8YFU2;A0A2R8YDP2;Q8NEV1;A0A2R8Y4D6;A0A2R8Y4H0;V9GYA2;A0A2R8YEW1;A0A2R8YDY7;A0A2R8YCK2;A0A2R8Y7T1;A0A2R8YF47;V9GY80;A0A2R8YEL7;A0A2R8Y797;A0A2R8Y3W6 P68400 50 64 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 1.3233E-07 131.37 By matching By matching By MS/MS By matching 1 1 1 1 1.0542 0.99005 14.042 4 Median 0.86029 0.84736 NaN 1 0 Median 1.1685 0.99869 NaN 1 0 Median 0.95112 0.98148 NaN 1 0 Median 1.4147 1.1938 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36720000 17883000 18836000 2278800 1119700 1159100 1319500 631190 688270 31781000 15550000 16231000 1340500 582700 757800 0 0 0 0 0 0 39668 394 41658 210456;210457;210458;210459 213922;213923 213922 2 YSFIQALVR KLLDIEGLYSKVRSRYSFIQALVRRIRGLL SKVRSRYSFIQALVRRIRGLLRISRN____ R Y S V R R 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1095.6077 Q92621 Q92621 1993 2001 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0060753 55.676 By matching By MS/MS By MS/MS 1 2 2 1.2743 1.1468 7.9617 5 Median NaN NaN NaN 0 0 Median 1.2743 1.0711 NaN 1 0 Median 1.0155 1.0796 9.0914 2 0 Median 1.4119 1.1968 6.0346 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 24741000 11515000 13225000 0 0 0 1838200 837050 1001200 20553000 9663200 10889000 2349900 1015200 1334700 0 0 0 0 0 0 39669 3547 41659 210460;210461;210462;210463;210464 213924;213925;213926 213925 3 YSFLQFDPAPR CGNQAAIMELDDTLKYSFLQFDPAPRRGEP DTLKYSFLQFDPAPRRGEPHVTRRTPDYFL K Y S P R R 1 1 0 1 0 1 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 11 0 1339.6561 P67775;P62714;H0YBN9 P67775 284 294 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 1.8427E-05 156.35 By MS/MS By matching 2 1 0.86987 0.78649 30.295 3 Median 1.0243 0.99877 33.792 2 0 Median 0.86987 0.7234 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69278000 37363000 31915000 56194000 30525000 25669000 13084000 6838800 6245300 0 0 0 0 0 0 0 0 0 0 0 0 39670 2594 41660 210465;210466;210467 213927;213928;213929 213929 3 YSGAYGASVSDEELK DRMKESSPSGSKSQRYSGAYGASVSDEELK YSGAYGASVSDEELKRRVAEELALEQAKKE R Y S L K R 2 0 0 1 0 0 2 2 0 0 1 1 0 0 0 3 0 0 2 1 0 0 15 0 1574.71 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 49 63 CHCHD3 MICOS complex subunit MIC19 yes no 2 4.3031E-10 158.42 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 3 1.3825 1.2013 24.423 7 Median 0.98206 0.90488 NaN 1 0 Median 1.4448 1.2013 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3073 1.0832 NaN 1 0 Median 1.3825 1.4143 NaN 1 0 Median 1.589 1.3352 29.786 3 0 Median 156050000 72668000 83385000 101760000 50639000 51117000 30691000 12049000 18641000 0 0 0 4056300 1778600 2277700 5026800 2156300 2870500 14522000 6044700 8477500 39671 720 41661 210468;210469;210470;210471;210472;210473;210474 213930;213931;213932;213933;213934;213935;213936;213937;213938;213939 213934 10 YSGAYGASVSDEELKR DRMKESSPSGSKSQRYSGAYGASVSDEELK SGAYGASVSDEELKRRVAEELALEQAKKES R Y S K R R 2 1 0 1 0 0 2 2 0 0 1 1 0 0 0 3 0 0 2 1 0 0 16 1 1730.8111 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 49 64 CHCHD3 MICOS complex subunit MIC19 yes no 2;3 1.2469E-10 165.7 By MS/MS By MS/MS By MS/MS 2 1 4 0.9801 0.989 8.1375 7 Median 0.95034 0.9896 3.2874 2 0 Median 1.1555 1.0796 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0461 0.9328 7.9581 4 3 Median 74208000 38057000 36151000 63343000 32880000 30463000 1936800 832020 1104800 0 0 0 0 0 0 0 0 0 8927600 4344600 4583000 39672 720 41662 210475;210476;210477;210478;210479;210480;210481 213940;213941;213942;213943;213944;213945;213946;213947 213943 8 YSGDQILIR ILPVVVGSWWYRSIRYSGDQILIRTTQIYT WYRSIRYSGDQILIRTTQIYTYFVYKTRNM R Y S I R T 0 1 0 1 0 1 0 1 0 2 1 0 0 0 0 1 0 0 1 0 0 0 9 0 1063.5662 Q9UGP8 Q9UGP8 218 226 SEC63 Translocation protein SEC63 homolog yes yes 2 0.0012806 83.265 By MS/MS By MS/MS By matching 2 1 1 0.80617 0.76546 61.218 4 Median 0.80617 0.77701 68.411 2 0 Median 1.4116 1.2232 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.3363 0.39341 NaN 1 0 Median NaN NaN NaN 0 0 Median 11537000 5344000 6193400 6307600 2651700 3655800 3629700 1570600 2059100 0 0 0 0 0 0 1600200 1121700 478550 0 0 0 39673 4264 41663 210482;210483;210484;210485 213948;213949;213950;213951 213948 4 YSGEFVQSAYLSR GEDELLKLLLPLLLRYSGEFVQSAYLSRRL LRYSGEFVQSAYLSRRLAYFCTRRLALQLD R Y S S R R 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 3 0 0 2 1 0 0 13 0 1505.7151 Q93074;Q7Z3Z5 Q93074 283 295 MED12;TNRC11 Mediator of RNA polymerase II transcription subunit 12 yes no 2 1.0652E-06 113.69 By MS/MS By matching 1 1 1.0348 1.0151 21.67 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0767 1.1831 NaN 1 0 Median 0.99453 0.87085 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6702500 3407300 3295200 0 0 0 0 0 0 6196400 3161500 3034800 506100 245750 260350 0 0 0 0 0 0 39674 3578 41664 210486;210487 213952;213953 213952 2 YSGELSGIR RRRGQVREVRKEEQRYSGELSGIRAGVKKS RKEEQRYSGELSGIRAGVKKSIKLK_____ R Y S I R A 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 1 0 0 0 9 0 980.49271 Q9NQZ2 Q9NQZ2 461 469 UTP3 Something about silencing protein 10 yes yes 2 0.0027536 69.825 By MS/MS By MS/MS 1 1 1.1215 1.0404 23.214 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2239 1.2259 NaN 1 0 Median 1.0277 0.88286 NaN 1 0 Median 15584000 7275700 8308300 0 0 0 0 0 0 0 0 0 0 0 0 8545500 3850400 4695100 7038600 3425300 3613300 39675 4071 41665 210488;210489 213954;213955;213956;213957 213954 4 YSGGNYRDNYDN RSRDYNGRNQGGYDRYSGGNYRDNYDN___ YDRYSGGNYRDNYDN_______________ R Y S D N - 0 1 3 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 3 0 0 0 12 1 1436.5593 P98179 P98179 146 157 RBM3 RNA-binding protein 3 yes yes 2 0.0054559 56.432 By matching By MS/MS By MS/MS By matching By MS/MS By matching 1 1 1 1 1 1 1.3915 1.2679 9.1289 6 Median 1.1945 1.1918 NaN 1 0 Median 1.6174 1.3424 NaN 1 0 Median 1.0515 1.0668 NaN 1 0 Median 1.6534 1.3691 NaN 1 0 Median 1.2183 1.289 NaN 1 0 Median 1.5893 1.2471 NaN 1 0 Median 18476000 8438100 10038000 3625600 1646700 1978900 2343900 924910 1419000 6093700 3087200 3006500 2270100 915960 1354200 3505200 1627100 1878100 637670 236180 401490 39676 2672 41666 210490;210491;210492;210493;210494;210495 213958;213959;213960 213959 3 YSGPEDDAAISLAFSK KEYFADMKRHRIQFKYSGPEDDAAISLAFS SGPEDDAAISLAFSKKQIDDRKEWLTNFME K Y S S K K 3 0 0 2 0 0 1 1 0 1 1 1 0 1 1 3 0 0 1 0 0 0 16 0 1669.7835 P11388 P11388 640 655 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.7217E-05 81.431 By MS/MS By matching By MS/MS By matching 2 2 2 1 1.0916 1.1253 12.76 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0138 1.1084 7.1676 2 0 Median 1.5921 1.4051 9.5338 2 0 Median 1.0676 1.1087 2.0972 2 0 Median 1.2666 1.0886 NaN 1 0 Median 36311000 17656000 18654000 0 0 0 0 0 0 21912000 10617000 11295000 1311300 518230 793020 12934000 6447000 6486700 153470 73868 79598 39677 1963 41667 210496;210497;210498;210499;210500;210501;210502 213961;213962;213963;213964;213965;213966;213967 213961 7 YSGPEDDAAISLAFSKK KEYFADMKRHRIQFKYSGPEDDAAISLAFS GPEDDAAISLAFSKKQIDDRKEWLTNFMED K Y S K K Q 3 0 0 2 0 0 1 1 0 1 1 2 0 1 1 3 0 0 1 0 0 0 17 1 1797.8785 P11388 P11388 640 656 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.3179E-05 51.211 By matching By MS/MS By matching 1 3 1 1.0412 1.0954 18.532 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2128 1.382 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0137 1.0954 16.198 3 1 Median 1.0412 0.94297 NaN 1 0 Median 33335000 15859000 17476000 0 0 0 0 0 0 7085000 3417900 3667100 0 0 0 25507000 12052000 13455000 743360 388960 354400 39678 1963 41668 210503;210504;210505;210506;210507 213968;213969;213970;213971 213969 4 YSGSYNDYLR LDYRRLPDAHSDYARYSGSYNDYLRAAQMH SDYARYSGSYNDYLRAAQMHSGYQRRM___ R Y S L R A 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 3 0 0 0 10 0 1236.5411 Q96PK6 Q96PK6 648 657 RBM14 RNA-binding protein 14 yes yes 2 2.6585E-10 172.21 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 2 5 7 3 1.1731 1.0608 9.9777 19 Median NaN NaN NaN 0 0 Median 1.4463 1.2388 17.674 2 0 Median 0.99511 1.0023 3.4539 2 1 Median 1.4332 1.1205 8.2373 5 1 Median 1.0294 1.0295 6.7719 7 1 Median 1.3542 1.1027 11.408 3 0 Median 195400000 91617000 103790000 0 0 0 6086300 2169500 3916800 78042000 37151000 40891000 14753000 6267200 8485700 89142000 43169000 45972000 7381900 2860100 4521700 39679 3712 41669 210508;210509;210510;210511;210512;210513;210514;210515;210516;210517;210518;210519;210520;210521;210522;210523;210524;210525;210526 213972;213973;213974;213975;213976;213977;213978;213979;213980;213981;213982;213983;213984;213985;213986;213987;213988;213989;213990;213991;213992;213993;213994;213995;213996 213972 25 YSGTLNLDR ENQTPEFFQDVCKPKYSGTLNLDRVTREAC DVCKPKYSGTLNLDRVTREACPELDYFVVF K Y S D R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 9 0 1037.5142 P49327;A0A0U1RQF0 P49327 1996 2004 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes no 2 0.00028393 138.54 By MS/MS By MS/MS 2 3 1.4709 1.2438 12.812 5 Median 1.0457 0.99604 1.7242 2 0 Median 1.4812 1.2633 1.5926 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 110370000 46783000 63588000 35016000 16945000 18070000 75355000 29838000 45518000 0 0 0 0 0 0 0 0 0 0 0 0 39680 2377 41670 210527;210528;210529;210530;210531 213997;213998;213999;214000;214001;214002;214003;214004;214005 213998 9 YSGVNQSMLFDK NGDVEVRRSCRIRSRYSGVNQSMLFDKLIT RSRYSGVNQSMLFDKLITNTAEAVLQKMDD R Y S D K L 0 0 1 1 0 1 0 1 0 0 1 1 1 1 0 2 0 0 1 1 0 0 12 0 1387.6442 Q6PL18 Q6PL18 164 175 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.00054928 75.509 By MS/MS By matching 1 1 1.0467 0.98119 54.769 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3808 1.4453 NaN 1 0 Median 0.79344 0.66613 NaN 1 0 Median 7675000 2923000 4752000 0 0 0 0 0 0 0 0 0 0 0 0 6803000 2326600 4476300 872050 596360 275690 39681 3177 41671 210532;210533 214006;214007 214007 2 YSHEVLSEENFK LGRCNYSQSERNLCKYSHEVLSEENFKVLK LCKYSHEVLSEENFKVLKNHELSGLNKEEL K Y S F K V 0 0 1 0 0 0 3 0 1 0 1 1 0 1 0 2 0 0 1 1 0 0 12 0 1480.6834 Q7Z2W4;C9J6P4 Q7Z2W4 108 119 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes no 3 0.00043341 51.013 By MS/MS By matching 1 1 0.97731 0.92437 15.761 2 Median 1.0434 1.0334 NaN 1 0 Median 0.91543 0.82689 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3244400 1412400 1832000 2824000 1201900 1622100 420360 210480 209890 0 0 0 0 0 0 0 0 0 0 0 0 39682 3236 41672 210534;210535 214008 214008 1 YSHLQPGDHLTDITLK HKFHVDISLTDFIQKYSHLQPGDHLTDITL SHLQPGDHLTDITLKVAGRIHAKRASGGKL K Y S L K V 0 0 0 2 0 1 0 1 2 1 3 1 0 0 1 1 2 0 1 0 0 0 16 0 1836.937 Q15046;H3BVA8 Q15046 112 127 KARS Lysine--tRNA ligase yes no 3;4 2.9225E-05 69.729 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 2 1 1.0634 0.98356 17.753 10 Median 1.0829 1.041 11.365 3 0 Median 1.0446 0.87748 15.358 2 0 Median 1.0766 1.1183 17.381 2 0 Median 1.0022 0.85728 6.4966 2 0 Median 1.316 1.3562 NaN 1 0 Median NaN NaN NaN 0 0 Median 104120000 49857000 54261000 62651000 29832000 32819000 20288000 10163000 10125000 15011000 6784800 8226100 4150700 2111100 2039600 2016100 965760 1050400 0 0 0 39683 2919 41673 210536;210537;210538;210539;210540;210541;210542;210543;210544;210545 214009;214010;214011;214012;214013;214014;214015;214016;214017 214011 9 YSHVQEVQER DHEDYDPQTVRLGSRYSHVQEVQERLNFLR RLGSRYSHVQEVQERLNFLRFLLKDGQLWL R Y S E R L 0 1 0 0 0 2 2 0 1 0 0 0 0 0 0 1 0 0 1 2 0 0 10 0 1273.6051 Q93008;O00507 Q93008 648 657 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2;3 0.00020634 71.555 By MS/MS By MS/MS By matching 3 5 1 1.1401 1.0747 18.72 9 Median 1.0321 1.0277 6.656 3 0 Median 1.2736 1.0747 14.286 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6078 1.6712 NaN 1 0 Median NaN NaN NaN 0 0 Median 4928000 2231200 2696800 943320 477410 465910 3872000 1721900 2150100 0 0 0 0 0 0 112690 31890 80801 0 0 0 39684 3573 41674 210546;210547;210548;210549;210550;210551;210552;210553;210554 214018;214019;214020;214021;214022;214023 214021 6 YSKEEEMDDMDR VSMILMRTLRKDYARYSKEEEMDDMDRDLG YARYSKEEEMDDMDRDLGDEYGWKQVHGDV R Y S D R D 0 1 0 3 0 0 3 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 12 1 1546.5916 Q9HD45;Q5TB53 Q9HD45 255 266 TM9SF3 Transmembrane 9 superfamily member 3 yes no 2;3 2.1388E-05 131.69 By MS/MS By MS/MS 2 4 1.2374 1.162 8.2454 6 Median 1.155 1.1808 11.18 2 0 Median 1.2389 1.162 8.4156 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 40291000 17503000 22788000 5552000 2374900 3177000 34739000 15128000 19611000 0 0 0 0 0 0 0 0 0 0 0 0 39685 4037 41675 210555;210556;210557;210558;210559;210560 214024;214025;214026;214027;214028;214029;214030 214026 7 YSLDPENPTK ______________________________ ______________________________ R Y S T K S 0 0 1 1 0 0 1 0 0 0 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1162.5506 A0A087WXM6;J3QQT2;J3KRX5;A0A0A6YYL6;P18621;J3KRB3;A0A087WWH0;J3QS96;A0A087WY81;J3KSJ0 A0A087WXM6 4 13 RPL17;RPL17-C18orf32 60S ribosomal protein L17 yes no 2 9.1156E-17 147.51 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 1 1 1 0.94969 0.78705 61.931 5 Median 0.79182 0.73001 NaN 1 1 Median 0.86075 0.71529 13.52 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3802 1.415 NaN 1 1 Median 3.4795 2.8626 NaN 1 1 Median 208740000 81964000 126780000 85974000 51413000 34561000 25320000 14526000 10794000 0 0 0 0 0 0 67969000 12297000 55672000 29479000 3727300 25752000 39686 67 41676 210561;210562;210563;210564;210565;210566;210567;210568 214031;214032;214033;214034;214035;214036;214037;214038;214039;214040 214038 10 YSLEPVAVELK MSHLGRPDGVPMPDKYSLEPVAVELKSLLG MPDKYSLEPVAVELKSLLGKDVLFLKDCVG K Y S L K S 1 0 0 0 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 2 0 0 11 0 1246.6809 P00558 P00558 76 86 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.0018201 56.916 By MS/MS By matching By MS/MS By matching 3 2 2 2 1.0177 0.95194 9.3805 9 Median 0.95491 0.87722 6.3336 3 0 Median 1.0838 0.91872 14.582 2 0 Median 0.99456 0.98997 1.9065 2 0 Median 1.1778 1.019 9.6318 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 155490000 76465000 79023000 73889000 37141000 36748000 26997000 12351000 14647000 52164000 25871000 26293000 2437200 1101900 1335200 0 0 0 0 0 0 39687 1824 41677 210569;210570;210571;210572;210573;210574;210575;210576;210577 214041;214042;214043;214044;214045;214046;214047 214046 7 YSLIVAQHVEK MIGHLQEELEEKNKKYSLIVAQHVEKEGGK KNKKYSLIVAQHVEKEGGKNNIQAKQNLEN K Y S E K E 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 1 2 0 0 11 0 1285.703 Q13439;H0Y6I0 Q13439 1808 1818 GOLGA4 Golgin subfamily A member 4 yes no 2 0.0015026 58.676 By MS/MS 1 1.1717 1.0296 NaN 1 Median NaN NaN NaN 0 0 Median 1.1717 1.0296 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8077700 3407000 4670700 0 0 0 8077700 3407000 4670700 0 0 0 0 0 0 0 0 0 0 0 0 39688 1156 41678 210578 214048 214048 1 YSLLPFWYTLLYQAHR PSQHNDIIRDALGQRYSLLPFWYTLLYQAH SLLPFWYTLLYQAHREGIPVMRPLWVQYPQ R Y S H R E 1 1 0 0 0 1 0 0 1 0 4 0 0 1 1 1 1 1 3 0 0 0 16 0 2070.0727 E9PKU7;Q14697;F5H6X6 Q14697 705 720 GANAB Neutral alpha-glucosidase AB no no 2;3 0.00013579 57.019 By MS/MS By MS/MS By matching 3 3 1 1.2391 1.0675 40.044 7 Median 0.92025 0.89061 3.5159 3 0 Median 1.2517 1.0708 53.593 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.245 1.2967 NaN 1 0 Median NaN NaN NaN 0 0 Median 34916000 16808000 18107000 24356000 12159000 12198000 10383000 4553800 5829000 0 0 0 0 0 0 176590 95820 80766 0 0 0 39689 2896;951 41679 210579;210580;210581;210582;210583;210584;210585 214049;214050;214051;214052;214053;214054;214055 214051 7 YSLQSANASSLSSGQLK SYGLGSEQRSQAPARYSLQSANASSLSSGQ LQSANASSLSSGQLKSPSLSQSQASRVLGQ R Y S L K S 2 0 1 0 0 2 0 1 0 0 3 1 0 0 0 6 0 0 1 0 0 0 17 0 1739.869 Q9H2P0;A0A2R8Y6X0 Q9H2P0 392 408 ADNP Activity-dependent neuroprotector homeobox protein yes no 2 1.2025E-39 134.99 By MS/MS By MS/MS 2 4 1.006 1.0629 4.0988 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.96418 1.0256 0.95721 2 0 Median NaN NaN NaN 0 0 Median 1.0648 1.0999 0.73235 2 1 Median NaN NaN NaN 0 0 Median 56723000 27024000 29699000 0 0 0 0 0 0 23296000 10904000 12392000 0 0 0 33427000 16120000 17307000 0 0 0 39690 3946 41680 210586;210587;210588;210589;210590;210591 214056;214057;214058;214059;214060;214061;214062 214061 7 YSLRDEFPLLTTK RTGTGTLSVFGMQARYSLRDEFPLLTTKRV ARYSLRDEFPLLTTKRVFWKGVLEELLWFI R Y S T K R 0 1 0 1 0 0 1 0 0 0 3 1 0 1 1 1 2 0 1 0 0 0 13 1 1581.8403 P04818 P04818 65 77 TYMS Thymidylate synthase yes yes 3 0.001022 45.115 By MS/MS By matching By matching By matching 1 1 1 1 1.0082 1.027 15.85 4 Median 0.9665 0.9666 NaN 1 0 Median 1.5017 1.3678 NaN 1 0 Median 0.96579 1.0627 NaN 1 0 Median 1.0517 0.99248 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10334000 5077700 5256700 6856300 3411900 3444400 1434600 638370 796200 1520900 753200 767660 522710 274220 248490 0 0 0 0 0 0 39691 1852 41681 210592;210593;210594;210595 214063;214064;214065 214065 3 YSLSGSVAHSR RSRAEMYDDVHSDGRYSLSGSVAHSRDAGR SDGRYSLSGSVAHSRDAGREGLRSDVFPGP R Y S S R D 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 4 0 0 1 1 0 0 11 0 1162.5731 M0R2Z9;Q8IX01;M0R3F6;M0R065;M0R216 M0R2Z9 77 87 SUGP2 SURP and G-patch domain-containing protein 2 yes no 2 0.011535 60.518 By MS/MS 2 0.93891 0.98655 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93891 0.98655 NaN 1 1 Median NaN NaN NaN 0 0 Median 3716500 2094500 1622000 0 0 0 0 0 0 0 0 0 0 0 0 3716500 2094500 1622000 0 0 0 39692 1437 41682 210596;210597 214066;214067 214067 2 YSLTYIYTGLSK LLLGPAVPQENQDGRYSLTYIYTGLSKHVE DGRYSLTYIYTGLSKHVEDVPAFQALGSLN R Y S S K H 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 2 0 3 0 0 0 12 0 1407.7286 P25311;C9JEV0 P25311 28 39 AZGP1 Zinc-alpha-2-glycoprotein yes no 2 0.026008 48.44 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39693 2130 41683 210598 214068 214068 1 YSLVSEQLEPAATSTYR SLRSLRLGPGGLDDRYSLVSEQLEPAATST LVSEQLEPAATSTYRAFAYERQASSSSSRA R Y S Y R A 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 3 2 0 2 1 0 0 17 0 1913.9371 Q9Y446;E9PKC4;E9PQ15;E9PRW6;E9PK71;E9PJR7 Q9Y446 195 211 PKP3 Plakophilin-3 yes no 2 1.4748E-07 83.182 By MS/MS By matching 3 1 0.93876 0.92397 11.891 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.89308 0.95729 14.554 3 1 Median 1.0781 0.8918 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7931600 4274200 3657500 0 0 0 0 0 0 7784700 4200000 3584700 146910 74177 72731 0 0 0 0 0 0 39694 4437 41684 210599;210600;210601;210602 214069;214070;214071 214071 3 YSNDLYELQASR GTRLLVFGGMVEYGKYSNDLYELQASRWEW YGKYSNDLYELQASRWEWKRLKAKTPKNGP K Y S S R W 1 1 1 1 0 1 1 0 0 0 2 0 0 0 0 2 0 0 2 0 0 0 12 0 1457.6787 A6NEM2;P51610 A6NEM2 106 117 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 no no 2 1.2588E-06 167.73 By MS/MS By MS/MS By matching 5 5 1 1.1706 1.0193 15.878 11 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92014 0.97884 24.056 5 1 Median 1.2028 1.0193 4.4277 5 2 Median NaN NaN NaN 0 0 Median 1.3764 1.1531 NaN 1 0 Median 102840000 49060000 53778000 0 0 0 0 0 0 86124000 41477000 44647000 15993000 7277200 8716100 0 0 0 720360 305630 414720 39695 509;2438 41685 210603;210604;210605;210606;210607;210608;210609;210610;210611;210612;210613 214072;214073;214074;214075;214076;214077;214078;214079;214080;214081;214082 214075 11 YSNEDTLSVALPYFWEHFDK HLPKSTFVLDEFKRKYSNEDTLSVALPYFW TLSVALPYFWEHFDKDGWSLWYSEYRFPEE K Y S D K D 1 0 1 2 0 0 2 0 1 0 2 1 0 2 1 2 1 1 2 1 0 0 20 0 2460.1274 P26641 P26641 297 316 EEF1G Elongation factor 1-gamma yes yes 2;3 5.7369E-07 56.482 By matching By MS/MS By matching 2 2 2 0.93077 0.807 14.472 6 Median NaN NaN NaN 0 0 Median 0.93077 0.807 5.4013 2 0 Median 0.94265 0.90862 25.074 2 0 Median 0.9588 0.85422 15.765 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 79697000 36680000 43016000 0 0 0 8553900 3992300 4561600 70119000 32228000 37891000 1024000 459700 564290 0 0 0 0 0 0 39696 2149 41686 210614;210615;210616;210617;210618;210619 214083;214084;214085;214086;214087 214086 5 YSNENLDLAR TRNYLDWLTSIPWGKYSNENLDLARAQAVL IPWGKYSNENLDLARAQAVLEEDHYGMEDV K Y S A R A 1 1 2 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 10 0 1193.5677 K7EKE6;P36776;K7EJE8;K7ER27 K7EKE6 359 368 LONP1 Lon protease homolog, mitochondrial yes no 2 2.0661E-05 146.81 By MS/MS By MS/MS By MS/MS By MS/MS 1 2 1 1 1.2461 1.0778 22.669 5 Median 1.1185 1.0778 NaN 1 0 Median 1.5098 1.2867 30.124 2 1 Median 1.4501 1.54 NaN 1 0 Median 1.1742 0.99993 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37936000 15950000 21987000 10611000 4315800 6295000 15173000 6496800 8676700 10065000 4172200 5892700 2087100 964850 1122300 0 0 0 0 0 0 39697 1370 41687 210620;210621;210622;210623;210624 214088;214089;214090;214091;214092;214093;214094;214095 214090 8 YSNFVSFPLYLNGR KEFSSEARVRDVVTKYSNFVSFPLYLNGRR KYSNFVSFPLYLNGRRMNTLQAIWMMDPKD K Y S G R R 0 1 2 0 0 0 0 1 0 0 2 0 0 2 1 2 0 0 2 1 0 0 14 0 1675.8358 I3L0K7;I3L239;I3L2D5;Q12931 Q12931 277 290 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 2 0.009029 40.589 By MS/MS By MS/MS By MS/MS 2 1 1 1.0662 1.0487 5.6126 4 Median 1.0358 1.0171 4.307 2 1 Median 1.21 1.0488 NaN 1 0 Median 1.0671 1.1316 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10864000 5031000 5832800 6491900 3086800 3405100 2529400 1075400 1454000 1842400 868810 973620 0 0 0 0 0 0 0 0 0 39698 2771;1269 41688 210625;210626;210627;210628 214096;214097;214098;214099 214097 4 YSNLVQSVLSSR RKKKVNPYEEVDQEKYSNLVQSVLSSRGVA QEKYSNLVQSVLSSRGVAQTPGSVEEDALL K Y S S R G 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 4 0 0 1 2 0 0 12 0 1351.7096 Q9BQP7;Q5QPE7;Q5QPE8 Q9BQP7 52 63 MGME1 Mitochondrial genome maintenance exonuclease 1 yes no 2 5.4635E-06 112.13 By MS/MS By MS/MS 2 1 1.0856 0.95007 6.1184 3 Plateau 1.0528 0.9958 7.7547 2 2 Median NaN NaN NaN 0 0 Median 0.96809 0.95007 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12682000 5700500 6981800 10149000 4430500 5718700 0 0 0 2533100 1270000 1263100 0 0 0 0 0 0 0 0 0 39699 3790 41689 210629;210630;210631 214100;214101;214102 214100 3 YSNMEQSLFTR HHQLPPVIKNMAFQKYSNMEQSLFTRFVRV AFQKYSNMEQSLFTRFVRVGVPTVDLDAQG K Y S T R F 0 1 1 0 0 1 1 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 11 0 1374.6238 O60306 O60306 1112 1122 AQR Intron-binding protein aquarius yes yes 2 1.0823E-18 160.36 By MS/MS By matching By MS/MS 1 1 1 1.0279 1.0363 6.6967 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85126 0.93621 NaN 1 0 Median 1.1842 1.0363 NaN 1 0 Median 1.0279 1.0623 NaN 1 1 Median NaN NaN NaN 0 0 Median 15651000 7899800 7751200 0 0 0 0 0 0 7236200 3748200 3488000 398070 149990 248080 8016700 4001600 4015100 0 0 0 39700 1611 41690 210632;210633;210634 214103;214104;214105 214105 3 YSNSALGHVNCTIK YLESEVAISEELVQKYSNSALGHVNCTIKE KYSNSALGHVNCTIKELRRLFLVDDLVDSL K Y S I K E 1 0 2 0 1 0 0 1 1 1 1 1 0 0 0 2 1 0 1 1 0 0 14 0 1562.7511 F8W914;Q9NQC3;H7C106;A0A0U1RQR6 F8W914 244 257 RTN4 Reticulon;Reticulon-4 yes no 2;3 2.7221E-11 177.16 By MS/MS 5 1.2222 1.0937 38.32 5 Median NaN NaN NaN 0 0 Median 1.2222 1.0937 38.32 5 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83329000 38381000 44948000 0 0 0 83329000 38381000 44948000 0 0 0 0 0 0 0 0 0 0 0 0 39701 1087 41691 210635;210636;210637;210638;210639 214106;214107;214108;214109 214109 4 YSNSEVVTGSGLDSQK QIRDDHIRFISELARYSNSEVVTGSGLDSQ SNSEVVTGSGLDSQKSDEEYRELFDLALRG R Y S Q K S 0 0 1 1 0 1 1 2 0 0 1 1 0 0 0 4 1 0 1 2 0 0 16 0 1669.7795 E7EVJ5;H7C229;E7EW33;Q96F07 E7EVJ5 340 355 CYFIP2 Cytoplasmic FMR1-interacting protein 2 yes no 2 7.9007E-05 75.479 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1274 1.0868 20.14 4 Median 0.87444 0.86147 NaN 1 0 Median 1.6248 1.4085 NaN 1 0 Median 0.98505 1.0674 NaN 1 1 Median 1.2904 1.1067 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13768000 6256300 7511700 3634000 1955900 1678100 3272000 1293700 1978400 3679100 1821500 1857600 3182900 1185200 1997600 0 0 0 0 0 0 39702 897 41692 210640;210641;210642;210643 214110;214111 214111 2 YSNSEVVTGSGR QIREDHMRFISELARYSNSEVVTGSGRQEA LARYSNSEVVTGSGRQEAQKTDAEYRKLFD R Y S G R Q 0 1 1 0 0 0 1 2 0 0 0 0 0 0 0 3 1 0 1 2 0 0 12 0 1254.584 Q7L576;A0A0G2JR96;A0A0G2JQT1 Q7L576 366 377 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes no 2 0.00089741 59.542 By MS/MS By MS/MS 1 1 0.9913 0.95077 63.537 2 Median NaN NaN NaN 0 0 Median 0.70499 0.60668 NaN 1 0 Median 1.3939 1.49 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2236100 1229100 1007000 0 0 0 1693100 996850 696220 543000 232200 310800 0 0 0 0 0 0 0 0 0 39703 3224 41693 210644;210645 214112;214113 214113 2 YSNVIQPSSFSK PSGNNRRGWNTTSQRYSNVIQPSSFSKSTP SQRYSNVIQPSSFSKSTPWGGSRDQEKPYF R Y S S K S 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 4 0 0 1 1 0 0 12 0 1355.6721 O15504;C9JYA1;B4DT96 O15504 54 65 NUPL2 Nucleoporin-like protein 2 yes no 2 0.00012403 89.827 By MS/MS 1 0.92092 0.90383 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92092 0.90383 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5968100 3345200 2622800 0 0 0 0 0 0 5968100 3345200 2622800 0 0 0 0 0 0 0 0 0 39704 728 41694 210646 214114 214114 1 YSPEFKDPLIDKEYYR LLSPPPRLTQVRWSRYSPEFKDPLIDKEYY SPEFKDPLIDKEYYRKPVEELTEEEKYVRE R Y S Y R K 0 1 0 2 0 0 2 0 0 1 1 2 0 1 2 1 0 0 3 0 0 0 16 2 2062.0048 J3QLS3;Q9Y2R9;J3QKW2 J3QLS3 66 81 MRPS7 28S ribosomal protein S7, mitochondrial yes no 3 0.018004 33.624 By MS/MS 1 0.68208 0.72627 NaN 1 Median 0.68208 0.72627 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13630000 7621300 6008500 13630000 7621300 6008500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39705 1341 41695 210647 214115 214115 0 YSPESQAQSVHHQRPGSR SALVSTPVRTKTSNRYSPESQAQSVHHQRP ESQAQSVHHQRPGSRVSPENLVDKSRGSRP R Y S S R V 1 2 0 0 0 3 1 1 2 0 0 0 0 0 2 4 0 0 1 1 0 0 18 1 2049.9729 O75376;E7EVK1;A0A088AWL3;J3KS29;J3QKP0 O75376 2101 2118 NCOR1 Nuclear receptor corepressor 1 yes no 3 0.0080859 24.041 By MS/MS By matching By matching 1 1 1 1.3751 1.2813 30.881 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1248 1.2149 NaN 1 0 Median 1.3751 1.2813 NaN 1 0 Median 1.9565 2.1258 NaN 1 0 Median NaN NaN NaN 0 0 Median 11528000 5462000 6066200 0 0 0 0 0 0 8673800 4321200 4352600 614180 269050 345130 2240200 871670 1368500 0 0 0 39706 1665 41696 210648;210649;210650 214116;214117 214116 2 YSPGYNTEVGDK TDRVLHQFRELPGRKYSPGYNTEVGDKWIW GRKYSPGYNTEVGDKWIWLK__________ K Y S D K W 0 0 1 1 0 0 1 2 0 0 0 1 0 0 1 1 1 0 2 1 0 0 12 0 1328.5885 A0A087WXC5;E7ESZ7;O95299 A0A087WXC5 339 350 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 2 0.0047583 42.743 By MS/MS 1 1.315 1.134 NaN 1 Median NaN NaN NaN 0 0 Median 1.315 1.134 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2133200 1044500 1088700 0 0 0 2133200 1044500 1088700 0 0 0 0 0 0 0 0 0 0 0 0 39707 66 41697 210651 214118 214118 1 YSPGYNTEVGDKWIWLK TDRVLHQFRELPGRKYSPGYNTEVGDKWIW PGYNTEVGDKWIWLK_______________ K Y S L K - 0 0 1 1 0 0 1 2 0 1 1 2 0 0 1 1 1 2 2 1 0 0 17 1 2055.0102 A0A087WXC5;E7ESZ7;O95299 A0A087WXC5 339 355 NDUFA10 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial yes no 3 0.027074 16.494 By MS/MS 1 0.84328 0.78564 NaN 1 Median 0.84328 0.78564 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7077200 3835500 3241700 7077200 3835500 3241700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39708 66 41698 210652 214119;214120 214119 2 YSPLHNVK YGCSDSKQHFEWLVKYSPLHNVKLPEADDI HFEWLVKYSPLHNVKLPEADDIQYPSMLLL K Y S V K L 0 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 1 0 0 8 0 956.50797 A0A499FJL1;P48147 A0A499FJL1 548 555 PREP Prolyl endopeptidase yes no 2 0.019561 47.067 By matching By MS/MS 1 2 0.77351 0.72789 10.318 3 Median 0.77351 0.78345 NaN 1 0 Median 0.78126 0.68202 9.2067 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5785100 3153200 2631900 1013700 552170 461510 4771400 2601000 2170400 0 0 0 0 0 0 0 0 0 0 0 0 39709 478 41699 210653;210654;210655 214121 214121 1 YSPTSPTYSPTSPK TYSPTSPVYTPTSPKYSPTSPTYSPTSPKY KYSPTSPTYSPTSPKYSPTSPTYSPTSPKG K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 4 3 0 2 0 0 0 14 0 1511.7144 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1909 1922 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 2.7089E-05 141.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 1 0.70098 0.60926 14.727 6 Median 0.76655 0.73755 NaN 1 0 Median 0.74474 0.65656 NaN 1 0 Median 0.46555 0.51592 NaN 1 0 Median 0.77563 0.70341 NaN 1 0 Median 0.51703 0.54374 NaN 1 1 Median 0.6598 0.56538 NaN 1 1 Median 21685000 13838000 7847600 4129200 2312500 1816700 1790100 1004900 785210 8280700 5527600 2753100 1711400 876680 834760 3531400 2468600 1062800 2242600 1647500 595100 39710 486 41700 210656;210657;210658;210659;210660;210661 214122;214123;214124;214125;214126;214127;214128;214129;214130 214124 9 YSPTSPTYSPTSPVYTPTSPK KYSPTSPTYSPTTPKYSPTSPTYSPTSPVY TYSPTSPVYTPTSPKYSPTSPTYSPTSPKY K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 6 5 5 0 3 1 0 0 21 0 2257.079 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1888 1908 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 1.7197E-22 113.72 By matching By MS/MS 1 1 0.34243 0.3374 8.7749 2 Median NaN NaN NaN 0 0 Median 0.41164 0.359 NaN 1 0 Median 0.28485 0.3171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6425100 4897800 1527300 0 0 0 351020 232260 118760 6074100 4665600 1408500 0 0 0 0 0 0 0 0 0 39711 486 41701 210662;210663 214131 214131 1 YSPTSPTYSPTTPK KYSPTSPKYSPTSPKYSPTSPTYSPTTPKY KYSPTSPTYSPTTPKYSPTSPTYSPTSPVY K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 3 4 0 2 0 0 0 14 0 1525.73 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1874 1887 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 0.0017223 60.49 By MS/MS By MS/MS 1 1 0.56878 0.56073 0.5182 2 Median NaN NaN NaN 0 0 Median 0.64507 0.56279 NaN 1 0 Median 0.50152 0.55868 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5799500 3784300 2015300 0 0 0 1102900 647270 455630 4696600 3137000 1559600 0 0 0 0 0 0 0 0 0 39712 486 41702 210664;210665 214132;214133 214132 2 YSQFINFPIYVWSSK SDYLELDTIKNLVKKYSQFINFPIYVWSSK YSQFINFPIYVWSSKTETVEEPMEEEEAAK K Y S S K T 0 0 1 0 0 1 0 0 0 2 0 1 0 2 1 3 0 1 2 1 0 0 15 0 1877.9352 P14625;Q96GW1;A0A1W2PRR1 P14625 271 285 HSP90B1 Endoplasmin yes no 2 8.0563E-10 107.37 By MS/MS By MS/MS By matching 4 1 1 1.037 0.96972 27.066 6 Median 0.97896 0.91617 7.4755 4 0 Median 1.1687 1.0224 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.8314 1.8084 NaN 1 0 Median NaN NaN NaN 0 0 Median 73078000 35592000 37486000 53175000 26583000 26592000 19728000 8933500 10795000 0 0 0 0 0 0 174620 75568 99053 0 0 0 39713 2006 41703 210666;210667;210668;210669;210670;210671 214134;214135;214136;214137;214138;214139 214139 6 YSQKEDKYEEEIK LMDQNLKCLSAAEEKYSQKEDKYEEEIKIL EKYSQKEDKYEEEIKILTDKLKEAETRAEF K Y S I K I 0 0 0 1 0 1 4 0 0 1 0 3 0 0 0 1 0 0 2 0 0 0 13 2 1687.7941 J3KN67;A0A2R2Y2Q3;P06753;A0A494C034 J3KN67 215 227 TPM3 Tropomyosin alpha-3 chain yes no 3;4 8.3379E-05 79.466 By MS/MS By MS/MS By MS/MS By MS/MS 1 4 2 3 1.1618 1.1208 17.897 10 Median 1.0125 1.0577 NaN 1 0 Median 1.1773 1.1634 7.8924 4 0 Median 0.85332 0.92087 0.78889 2 0 Median 1.3826 1.3088 19.74 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 58074000 26990000 31084000 21293000 9884400 11408000 20297000 9317400 10980000 8992100 4712000 4280100 7492200 3076400 4415800 0 0 0 0 0 0 39714 1303 41704 210672;210673;210674;210675;210676;210677;210678;210679;210680;210681 214140;214141;214142;214143;214144;214145;214146;214147;214148;214149;214150;214151 214147 12 YSQLVVETIR SKKRKNSKKKNQPGKYSQLVVETIRRLGER NQPGKYSQLVVETIRRLGERNGSSLAKIYT K Y S I R R 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 10 0 1206.6608 Q92522 Q92522 48 57 H1FX Histone H1x yes yes 2 1.8126E-07 166.09 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 3 4 3 2 2 1.1901 1.0068 16.905 16 Median 1.043 0.94626 19.15 2 0 Median 1.2024 0.9998 15.371 3 0 Median 0.78104 0.75421 24.612 4 2 Median 1.2503 1.0385 7.1845 3 2 Median 0.88014 0.89252 1.1597 2 0 Median 1.3191 1.0644 4.4817 2 0 Median 543820000 281080000 262750000 100350000 52663000 47686000 33116000 14687000 18428000 104320000 57725000 46599000 14527000 6279900 8247600 255790000 134940000 120850000 35721000 14783000 20938000 39715 3531 41705 210682;210683;210684;210685;210686;210687;210688;210689;210690;210691;210692;210693;210694;210695;210696;210697 214152;214153;214154;214155;214156;214157;214158;214159;214160;214161;214162;214163;214164;214165;214166;214167 214159 16 YSQLVVETIRR SKKRKNSKKKNQPGKYSQLVVETIRRLGER QPGKYSQLVVETIRRLGERNGSSLAKIYTE K Y S R R L 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1362.7619 Q92522 Q92522 48 58 H1FX Histone H1x yes yes 2;3 8.9559E-19 169.76 By MS/MS By MS/MS By MS/MS By matching By MS/MS By matching 3 2 3 2 6 2 0.98707 1.0294 26.347 18 Median 1.2405 1.3354 32.827 3 1 Median 1.2174 1.0339 8.5514 2 0 Median 0.87729 0.90961 26.993 3 0 Plateau 1.4814 1.3541 22.302 2 0 Median 0.92282 0.99502 3.8253 6 1 Median 1.5416 1.3559 9.2013 2 0 Median 322370000 157490000 164880000 73583000 35017000 38566000 9521600 4488900 5032700 19007000 9960400 9047000 4209600 1825100 2384400 213880000 105330000 108560000 2158900 872510 1286400 39716 3531 41706 210698;210699;210700;210701;210702;210703;210704;210705;210706;210707;210708;210709;210710;210711;210712;210713;210714;210715 214168;214169;214170;214171;214172;214173;214174;214175;214176;214177;214178;214179;214180;214181;214182;214183 214169 16 YSQSDLEQTK RQVQSQAHGLQMRLKYSQSDLEQTKTRHLA QMRLKYSQSDLEQTKTRHLALNLQEKSKLE K Y S T K T 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 10 0 1197.5513 Q14683;G8JLG1 Q14683 714 723 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein yes no 2 0.00033784 85.731 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 1 1 1 2 1.346 1.1806 13.913 6 Median NaN NaN NaN 0 0 Median 1.3587 1.1907 NaN 1 0 Median 0.91606 0.98016 NaN 1 1 Median 1.3335 1.212 NaN 1 0 Median 0.82867 0.8701 NaN 1 0 Median 1.4074 1.1899 2.31 2 0 Median 10947000 5269000 5678300 0 0 0 2382700 1016900 1365800 1459700 780480 679230 763400 302620 460780 4054100 2164100 1890000 2287400 1004900 1282500 39717 2889 41707 210716;210717;210718;210719;210720;210721 214184;214185;214186;214187;214188 214188 4 YSQTGNYELAVALSR FFNSAVQKAAPGSQRYSQTGNYELAVALSR YSQTGNYELAVALSRWVFKEEGVLRVGPVS R Y S S R W 2 1 1 0 0 1 1 1 0 0 2 0 0 0 0 2 1 0 2 1 0 0 15 0 1670.8264 P39656;A0A0C4DGS1 P39656 283 297 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes no 2;3 3.0554E-09 138.94 By MS/MS By matching By MS/MS By matching 4 3 2 1 1.0906 1.0065 21.798 10 Median 0.96385 0.93682 33.779 4 0 Median 1.1382 0.98313 12.184 3 0 Median 1.0082 1.059 14.078 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2922 1.0703 NaN 1 0 Median 68039000 34664000 33375000 38081000 19163000 18918000 2697900 1204400 1493500 27107000 14221000 12886000 0 0 0 0 0 0 152600 75021 77580 39718 253 41708 210722;210723;210724;210725;210726;210727;210728;210729;210730;210731 214189;214190;214191;214192;214193;214194;214195;214196;214197;214198;214199 214196 11 YSQVLANGLDNK PDWFLNRQKDVKDGKYSQVLANGLDNKLRE DGKYSQVLANGLDNKLREDLERLKKIRAHR K Y S N K L 1 0 2 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1320.6674 P62269;J3JS69 P62269 95 106 RPS18 40S ribosomal protein S18 yes no 2 4.8295E-06 128.91 By MS/MS By matching By matching 1 1 1 1.2159 1.0328 16.08 3 Median 1.1086 1.0328 NaN 1 0 Median 1.2159 1.0315 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.6457 1.3636 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 597880000 274390000 323490000 426300000 198600000 227700000 167710000 74104000 93609000 0 0 0 3868800 1689900 2178900 0 0 0 0 0 0 39719 2578 41709 210732;210733;210734 214200;214201;214202 214202 3 YSQVLANGLDNKLR PDWFLNRQKDVKDGKYSQVLANGLDNKLRE KYSQVLANGLDNKLREDLERLKKIRAHRGL K Y S L R E 1 1 2 1 0 1 0 1 0 0 3 1 0 0 0 1 0 0 1 1 0 0 14 1 1589.8526 P62269;J3JS69 P62269 95 108 RPS18 40S ribosomal protein S18 yes no 2 0.00014657 135.8 By MS/MS 2 0.71321 0.70912 52.681 2 Median 0.71321 0.70912 52.681 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17950000 9233500 8716300 17950000 9233500 8716300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39720 2578 41710 210735;210736 214203;214204 214203 2 YSQVLGLGGR RDSTHLICAFANTPKYSQVLGLGGRIVRKE ANTPKYSQVLGLGGRIVRKEWVLDCHRMRR K Y S G R I 0 1 0 0 0 1 0 3 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1048.5665 F5H8D7;P18887 F5H8D7 339 348 XRCC1 DNA repair protein XRCC1 yes no 2 2.1078E-05 146.58 By matching By MS/MS By MS/MS 1 2 2 1.2506 1.0777 63.051 5 Median 0.36693 0.38014 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.248 1.2752 39.952 2 0 Median 1.6431 1.413 38.301 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 49980000 23934000 26046000 1367900 810600 557320 0 0 0 41934000 20382000 21552000 6678100 2741400 3936700 0 0 0 0 0 0 39721 1047 41711 210737;210738;210739;210740;210741 214205;214206;214207;214208;214209 214206 5 YSQYLDR RALVENCLVPDLWIRYSQYLDRQLKVKDLV LVPDLWIRYSQYLDRQLKVKDLVLSVHNRA R Y S D R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 943.43995 A0A499FI31;Q15020 A0A499FI31 368 374 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes no 2 0.013225 76.774 By MS/MS 1 1.6053 1.3482 NaN 1 Median NaN NaN NaN 0 0 Median 1.6053 1.3482 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6893700 2587000 4306700 0 0 0 6893700 2587000 4306700 0 0 0 0 0 0 0 0 0 0 0 0 39722 473 41712 210742 214210 214210 1 YSQYNALNVPLHNR SLSIINEKVPFNDTKYSQYNALNVPLHNRR KYSQYNALNVPLHNRRHQLKMRDIAGQALA K Y S N R R 1 1 3 0 0 1 0 0 1 0 2 0 0 0 1 1 0 0 2 1 0 0 14 0 1687.8431 Q6ZMI0 Q6ZMI0 233 246 PPP1R21 Protein phosphatase 1 regulatory subunit 21 yes yes 3 0.028742 28.976 By MS/MS 1 0.70608 0.75398 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70608 0.75398 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4833100 2644800 2188300 0 0 0 0 0 0 4833100 2644800 2188300 0 0 0 0 0 0 0 0 0 39723 3197 41713 210743 214211 214211 1 YSQYQQAIYK LESQTYEVFEKDPIKYSQYQQAIYKCLLDR KDPIKYSQYQQAIYKCLLDRVPEEEKDTNV K Y S Y K C 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 3 0 0 0 10 0 1290.6245 O14744;H0YJX6;H0YJ77;G3V5T6 O14744 334 343 PRMT5 Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed yes no 2 0.00021935 128.61 By MS/MS 1 1.4038 1.1784 NaN 1 Median NaN NaN NaN 0 0 Median 1.4038 1.1784 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8533700 3750900 4782800 0 0 0 8533700 3750900 4782800 0 0 0 0 0 0 0 0 0 0 0 0 39724 1492 41714 210744 214212;214213 214213 2 YSSAFTNR KQADEEFQILANSWRYSSAFTNRIFFAMVD ILANSWRYSSAFTNRIFFAMVDFDEGSDVF R Y S N R I 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 0 0 8 0 944.43519 A0A087WU53;Q9H0U3 A0A087WU53 138 145 MAGT1 Magnesium transporter protein 1 yes no 2 0.013601 52.716 By MS/MS 1 1.2326 1.1538 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2326 1.1538 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1340000 680230 659750 0 0 0 0 0 0 1340000 680230 659750 0 0 0 0 0 0 0 0 0 39725 24 41715 210745 214214 214214 1 YSSDVQEMILSSATADR SVAVNVAPGRLCAGRYSSDVQEMILSSATA SDVQEMILSSATADRIPIAVSGVRGMGFLM R Y S D R I 2 1 0 2 0 1 1 0 0 1 1 0 1 0 0 4 1 0 1 1 0 0 17 0 1871.8571 Q92616 Q92616 2505 2521 GCN1L1 Translational activator GCN1 yes yes 2 2.5025E-05 58.674 By MS/MS By matching 1 2 1.2236 1.209 13.117 3 Plateau 1.2236 1.209 NaN 1 0 Median 1.1524 1.0072 11.037 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3882400 1784500 2097900 2847400 1367800 1479600 1035000 416740 618250 0 0 0 0 0 0 0 0 0 0 0 0 39726 3544 41716 210746;210747;210748 214215 214215 1 YSSDVQEMILSSATADRIPIAVSGVR SVAVNVAPGRLCAGRYSSDVQEMILSSATA SATADRIPIAVSGVRGMGFLMRHHIETGGG R Y S V R G 3 2 0 2 0 1 1 1 0 3 1 0 1 0 1 5 1 0 1 3 0 0 26 1 2764.4065 Q92616 Q92616 2505 2530 GCN1L1 Translational activator GCN1 yes yes 3 0.024446 13.896 By MS/MS By MS/MS By matching 1 2 1 0.99651 1.027 7.885 4 Median 0.94821 1.014 NaN 1 0 Median 1.1043 1.0743 12.767 2 0 Median 0.82334 1.0401 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16106000 7976600 8129700 12277000 5974900 6302200 2697800 1342000 1355800 1131500 659780 471680 0 0 0 0 0 0 0 0 0 39727 3544 41717 210749;210750;210751;210752 214216;214217 214216 2 YSSDYFQAPSDYR KSQLVYQSRRGPLVKYSSDYFQAPSDYRYY VKYSSDYFQAPSDYRYYPYQSFQTPQHPSF K Y S Y R Y 1 1 0 2 0 1 0 0 0 0 0 0 0 1 1 3 0 0 3 0 0 0 13 0 1597.6685 Q08380 Q08380 442 454 LGALS3BP Galectin-3-binding protein yes yes 2 7.268E-07 103.7 By MS/MS By matching 1 2 1.212 1.0873 18.163 3 Median 0.90444 0.86689 NaN 1 0 Median 1.304 1.1618 9.3816 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6324900 3255400 3069500 4849500 2544500 2305000 1475400 710940 764500 0 0 0 0 0 0 0 0 0 0 0 0 39728 2739 41718 210753;210754;210755 214218;214219 214219 2 YSSEVATESPLDFTK GDSFLNEDLNQLIKRYSSEVATESPLDFTK YSSEVATESPLDFTKYLKTSLH________ R Y S T K Y 1 0 0 1 0 0 2 0 0 0 1 1 0 1 1 3 2 0 1 1 0 0 15 0 1672.7832 Q8WTT2 Q8WTT2 779 793 NOC3L Nucleolar complex protein 3 homolog yes yes 2 2.6464E-09 122.7 By MS/MS By MS/MS 1 2 1.0026 1.0235 16.563 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0182 1.1178 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89201 0.9112 16.439 2 0 Median NaN NaN NaN 0 0 Median 21440000 11279000 10161000 0 0 0 0 0 0 6883700 3668200 3215500 0 0 0 14556000 7611100 6945000 0 0 0 39729 3484 41719 210756;210757;210758 214220;214221;214222;214223 214223 4 YSSLNLFDTYK SDRSGPTAKGKDGKKYSSLNLFDTYKGKSL DGKKYSSLNLFDTYKGKSLEIQKPAVAPRH K Y S Y K G 0 0 1 1 0 0 0 0 0 0 2 1 0 1 0 2 1 0 2 0 0 0 11 0 1349.6503 P48634 P48634 17 27 PRRC2A Protein PRRC2A yes yes 2 0.00070215 64.297 By MS/MS By matching By matching 1 1 1 1.0306 0.95079 14.753 3 Median 0.98865 0.95079 NaN 1 0 Median 1.0306 0.90451 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3228 1.193 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5953900 2880100 3073800 4351200 2099400 2251800 1448300 714700 733630 0 0 0 154340 65959 88377 0 0 0 0 0 0 39730 2363 41720 210759;210760;210761 214224;214225 214225 2 YSSMEDHLEILEWTLR RFLGTSGQNVSDIFRYSSMEDHLEILEWTL SSMEDHLEILEWTLRVRHISPTAPDTLECP R Y S L R V 0 1 0 1 0 0 3 0 1 1 3 0 1 0 0 2 1 1 1 0 0 0 16 0 2020.9564 F8W8R3;A0A087WWF6;P49005 F8W8R3 355 370 POLD2 DNA polymerase delta subunit 2 yes no 3 0.0060685 36.638 By MS/MS 1 1.3858 1.3918 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3858 1.3918 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3587300 1378000 2209300 0 0 0 0 0 0 3587300 1378000 2209300 0 0 0 0 0 0 0 0 0 39731 58 41721 210762 214226 214226 1 YSSQDADEQDWEFQKR NEQGQDLGKRDHHGRYSSQDADEQDWEFQK SSQDADEQDWEFQKRDVSLGTYGSRAAEPQ R Y S K R D 1 1 0 3 0 3 2 0 0 0 0 1 0 1 0 2 0 1 1 0 0 0 16 1 2030.8606 Q9C0C2;A0A2R8Y5C4 Q9C0C2 918 933 TNKS1BP1 182 kDa tankyrase-1-binding protein yes no 3 4.9473E-09 126.48 By MS/MS By matching By matching 1 1 1 1.0705 1.0768 9.0188 3 Median 1.0705 1.0768 NaN 1 0 Median 1.1862 1.1358 NaN 1 0 Median 0.79676 0.95263 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13977000 6637200 7339400 9076100 4282400 4793700 1272500 633630 638910 3628000 1721200 1906800 0 0 0 0 0 0 0 0 0 39732 3903 41722 210763;210764;210765 214227;214228 214227 2 YSSQFGGGSQYAYFHEEDESSFQLVDTAR DWTGATYQDKRYTNKYSSQFGGGSQYAYFH HEEDESSFQLVDTARTQKTAYQRNRMRFAQ K Y S A R T 2 1 0 2 0 3 3 3 1 0 1 0 0 3 0 5 1 0 3 1 0 0 29 0 3304.4221 O15371;B0QYA5;B0QYA6;B0QYA8 O15371 59 87 EIF3D Eukaryotic translation initiation factor 3 subunit D yes no 3 2.3291E-05 32.164 By MS/MS 1 1.0496 1.0434 NaN 1 Median 1.0496 1.0434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2968200 1463500 1504700 2968200 1463500 1504700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39733 1540 41723 210766 214229;214230 214229 2 YSTDVSVDEVK AQHSQHRTPCKGGIRYSTDVSVDEVKALAS GGIRYSTDVSVDEVKALASLMTYKCAVVDV R Y S V K A 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 2 1 0 1 3 0 0 11 0 1240.5823 P00367;P49448 P00367 152 162 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.00012637 119.68 By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 0.88885 0.78784 33.359 4 Median 0.93172 0.8542 NaN 1 0 Median 0.86097 0.72663 NaN 1 0 Median 0.91763 0.92245 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.52901 0.43923 NaN 1 0 Median 124420000 57910000 66508000 66398000 32541000 33858000 52696000 22682000 30013000 4865000 2389600 2475400 0 0 0 0 0 0 459480 297620 161860 39734 1814 41724 210767;210768;210769;210770 214231;214232;214233;214234;214235 214234 5 YSTKPDAVFAGAMPTMASVK EFSNLPQEELIEWIKYSTKPDAVFAGAMPT DAVFAGAMPTMASVKLSALRPIVNHPHYED K Y S V K L 4 0 0 1 0 0 0 1 0 0 0 2 2 1 2 2 2 0 1 2 0 0 20 1 2071.0118 A0A1B0GW05;Q2PZI1 A0A1B0GW05 617 636 DPY19L1 Probable C-mannosyltransferase DPY19L1 yes no 3 0.0046438 34.221 By MS/MS 1 0.51273 0.55882 NaN 1 Median 0.51273 0.55882 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7197300 4473700 2723500 7197300 4473700 2723500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39735 326 41725 210771 214236 214236 1 YSTPTYTGGQSESHVQSASEDTVTER RTDAPLMQFKSILLKYSTPTYTGGQSESHV ESHVQSASEDTVTERVEMSVNDKAEASGCR K Y S E R V 1 1 0 1 0 2 3 2 1 0 0 0 0 0 1 5 5 0 2 2 0 0 26 0 2816.2373 Q7Z2T5 Q7Z2T5 691 716 TRMT1L TRMT1-like protein yes yes 3 2.7748E-25 75.226 By MS/MS By MS/MS By MS/MS 1 1 2 0.74557 0.7531 77.006 4 Median 0.60454 0.58302 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.9195 0.9728 NaN 1 0 Median 0.51828 0.47553 119.85 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35977000 19327000 16650000 4007100 2348800 1658300 0 0 0 25966000 13809000 12157000 6004500 3170000 2834500 0 0 0 0 0 0 39736 3235 41726 210772;210773;210774;210775 214237;214238;214239;214240 214239 4 YSTSGSSGLTTGK LCGKFVLRPLRPCRRYSTSGSSGLTTGKIA RRYSTSGSSGLTTGKIAGAGLLFVGGGIGG R Y S G K I 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 4 3 0 1 0 0 0 13 0 1244.5885 Q16891;B9A067;A0A087WYS0;D6RAW4 Q16891 33 45 IMMT MICOS complex subunit MIC60 yes no 2 0.0015148 69.979 By MS/MS By MS/MS By matching 1 1 1 1.2083 1.0385 6.0577 3 Median 1.0571 1.0385 NaN 1 0 Median 1.2913 1.1333 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2083 1.0088 NaN 1 0 Median 6295000 2596400 3698600 2220400 1022500 1197900 3496500 1358000 2138500 0 0 0 0 0 0 0 0 0 578100 215800 362290 39737 3001 41727 210776;210777;210778 214241;214242 214242 2 YSTWEPEENILDAR GRMEYLVKWKGWSQKYSTWEPEENILDARL KYSTWEPEENILDARLLAAFEEREREMELY K Y S A R L 1 1 1 1 0 0 3 0 0 1 1 0 0 0 1 1 1 1 1 0 0 0 14 0 1721.7897 Q9HC52;C9J6K3;C9JM54 Q9HC52 39 52 CBX8 Chromobox protein homolog 8 yes no 2 0.00048865 69.01 By MS/MS 1 0.76907 0.76201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.76907 0.76201 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8148600 4214600 3934100 0 0 0 0 0 0 8148600 4214600 3934100 0 0 0 0 0 0 0 0 0 39738 4026 41728 210779 214243;214244 214244 2 YSVAISTSEVGTDHK KGTQSLLLEVDATSKYSVAISTSEVGTDHK YSVAISTSEVGTDHKLHLKEDPNLISVNNF K Y S H K L 1 0 0 1 0 0 1 1 1 1 0 1 0 0 0 3 2 0 1 2 0 0 15 0 1592.7682 Q9UK61;A0A087X0F1 Q9UK61 854 868 FAM208A Protein FAM208A yes no 3 1.0994E-06 88.507 By MS/MS 1 0.80573 0.84338 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.80573 0.84338 NaN 1 0 Median NaN NaN NaN 0 0 Median 6735300 3438600 3296700 0 0 0 0 0 0 0 0 0 0 0 0 6735300 3438600 3296700 0 0 0 39739 4307 41729 210780 214245 214245 1 YSVDIPLDK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD HLMPTRYSVDIPLDKTVVNKDVFRDPALKR R Y S D K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 9 0 1048.5441 P61353;K7ELC7 P61353 85 93 RPL27 60S ribosomal protein L27 yes no 2 0.00097908 87.308 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 2 1 3 2 1.019 0.92842 24.413 15 Median 1.0034 0.94351 4.4501 4 1 Median 1.019 0.86421 47.876 3 0 Median 0.92672 0.87298 2.0221 2 0 Median 1.1189 0.92842 NaN 1 0 Median 1.0096 1.1117 7.9091 3 0 Median 1.1832 0.95374 7.6724 2 0 Median 817220000 413490000 403730000 431850000 217010000 214840000 199760000 101830000 97928000 121340000 63867000 57478000 11985000 5590100 6394400 32825000 16129000 16696000 19464000 9063100 10401000 39740 2557 41730 210781;210782;210783;210784;210785;210786;210787;210788;210789;210790;210791;210792;210793;210794;210795 214246;214247;214248;214249;214250;214251;214252;214253;214254;214255;214256;214257;214258;214259;214260;214261;214262;214263;214264;214265;214266;214267;214268 214250 23 YSVDIPLDKTVVNK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD RYSVDIPLDKTVVNKDVFRDPALKRKARRE R Y S N K D 0 0 1 2 0 0 0 0 0 1 1 2 0 0 1 1 1 0 1 3 0 0 14 1 1589.8665 P61353;K7ELC7 P61353 85 98 RPL27 60S ribosomal protein L27 yes no 2 0.00064856 80.916 By MS/MS By matching By matching 1 1 1 0.89171 0.8015 10.025 3 Median 0.92257 0.92197 NaN 1 0 Median 0.85887 0.75918 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89171 0.8015 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9972900 5017800 4955100 8759500 4399200 4360300 745030 373540 371490 0 0 0 468400 245040 223360 0 0 0 0 0 0 39741 2557 41731 210796;210797;210798 214269 214269 1 YSVFFQSLAVVEQEMK LPAVRQYLFSLYECRYSVFFQSLAVVEQEM SVFFQSLAVVEQEMKKDWLFAPHYRYYVRE R Y S M K K 1 0 0 0 0 2 2 0 0 0 1 1 1 2 0 2 0 0 1 3 0 0 16 0 1903.939 Q15008 Q15008 268 283 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2 0.04107 23.226 By MS/MS 1 1.0778 0.9216 NaN 1 Median NaN NaN NaN 0 0 Median 1.0778 0.9216 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5765200 2831300 2933900 0 0 0 5765200 2831300 2933900 0 0 0 0 0 0 0 0 0 0 0 0 39742 2911 41732 210799 214270 214270 1 YSVLLPTYNER RSRRELEVRSPRQNKYSVLLPTYNERENLP RQNKYSVLLPTYNERENLPLIVWLLVKSFS K Y S E R E 0 1 1 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 2 1 0 0 11 0 1353.6929 Q5QPK2;H0Y368;O60762;Q5QPJ9 Q5QPK2 27 37 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes no 2 0.0001135 133.13 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 0.85885 0.81679 59.933 5 Median 0.85885 0.81679 NaN 1 0 Median 0.70353 0.59486 NaN 1 0 Median 0.88061 0.84611 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0006 0.9988 NaN 1 0 Median 0.25828 0.22416 NaN 1 0 Median 70274000 38030000 32244000 47627000 25830000 21798000 5354800 3339800 2015100 11111000 6036800 5074700 0 0 0 5662100 2422500 3239500 517950 401380 116570 39743 1142 41733 210800;210801;210802;210803;210804 214271;214272;214273;214274;214275 214271 5 YSVMINK GGLAVILPPLSPYFKYSVMINKATPYNYPV PPLSPYFKYSVMINKATPYNYPVPVRDDGN K Y S N K A 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 1 0 0 7 0 853.43677 Q6FGG4;O95167;H7C0D7;H7C2R1;A8MVM8;S4R3T6;A8MYJ8 Q6FGG4 41 47 NDUFA3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 yes no 2 0.021799 58.687 By MS/MS By MS/MS By matching 1 2 1 1.4186 1.1671 9.2886 4 Median 1.1739 1.0714 NaN 1 0 Median 1.528 1.2663 1.4774 2 0 Median NaN NaN NaN 0 0 Median 1.3213 1.087 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13658000 5395000 8262600 7008300 3026100 3982200 6097300 2124100 3973200 0 0 0 552040 244800 307240 0 0 0 0 0 0 39744 1750 41734 210805;210806;210807;210808 214276;214277 214276 2 YSVQLLTPANLLAK ALNHLGEIGTKTTLRYSVQLLTPANLLAKI RYSVQLLTPANLLAKINGKDSIEKEHVEEI R Y S A K I 2 0 1 0 0 1 0 0 0 0 4 1 0 0 1 1 1 0 1 1 0 0 14 0 1529.8817 Q9Y265;H7C4G5 Q9Y265 405 418 RUVBL1 RuvB-like 1 yes no 2 0.00064473 64.906 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 1 2 3 2 2 1 1.0493 0.92515 9.6645 9 Median 1.058 0.97587 NaN 1 0 Median 1.1121 0.94014 NaN 1 0 Median 0.84417 0.81663 1.6029 3 0 Median 1.1493 0.92515 NaN 1 0 Median 1.0212 1.0089 11.5 2 0 Median 1.0493 0.85947 NaN 1 0 Median 162900000 82818000 80086000 24710000 12429000 12281000 28699000 13447000 15252000 88592000 46716000 41877000 129270 62856 66418 20313000 9955400 10358000 460350 208420 251920 39745 4375 41735 210809;210810;210811;210812;210813;210814;210815;210816;210817;210818;210819 214278;214279;214280;214281;214282;214283;214284;214285;214286;214287 214283 10 YSVQTADHR WGVDSLITLAFQDQRYSVQTADHRFLRHDG AFQDQRYSVQTADHRFLRHDGRLVARPEPA R Y S H R F 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 9 0 1075.5047 Q16658 Q16658 186 194 FSCN1 Fascin yes yes 2 0.00043967 127.56 By MS/MS By MS/MS By matching 2 1 1 1.1467 1.0928 12.715 4 Median 1.0172 1.0012 16.801 2 0 Median 1.2555 1.0591 NaN 1 0 Median 1.1622 1.192 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9805000 4369000 5436000 2105600 994540 1111100 7238900 3168200 4070800 460470 206330 254140 0 0 0 0 0 0 0 0 0 39746 2993 41736 210820;210821;210822;210823 214288;214289;214290 214290 3 YSYNTEWR SREYTEDGQVKKETRYSYNTEWRSEIINSK QVKKETRYSYNTEWRSEIINSKNFDREIGH R Y S W R S 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 2 0 0 0 8 0 1117.4829 Q9BTV4 Q9BTV4 145 152 TMEM43 Transmembrane protein 43 yes yes 2 0.0024479 120.62 By MS/MS By MS/MS By matching 1 1 2 0.81431 0.68612 22.773 4 Median 0.94147 0.93462 NaN 1 0 Median 0.87038 0.75826 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70596 0.58861 7.5393 2 0 Median 14997000 7457300 7539300 7146500 3355200 3791400 6242300 3063000 3179300 0 0 0 0 0 0 0 0 0 1607800 1039100 568660 39747 3830 41737 210824;210825;210826;210827 214291;214292;214293 214291 3 YSYQYTVANK KIVPTVYEDKSGKQRYSYQYTVANKEYVAY SGKQRYSYQYTVANKEYVAYSHTGRIIPAI R Y S N K E 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 3 1 0 0 10 0 1235.5823 Q969X5 Q969X5 205 214 ERGIC1 Endoplasmic reticulum-Golgi intermediate compartment protein 1 yes yes 2 0.0019589 78.934 By MS/MS By MS/MS By matching 1 1 1 0.95673 0.88659 6.9552 3 Median 0.95673 0.88655 NaN 1 0 Median 1.1896 1.0001 NaN 1 1 Median 0.84465 0.88659 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18891000 8697400 10194000 10186000 4955200 5231300 7832700 3290800 4541900 871760 451350 420410 0 0 0 0 0 0 0 0 0 39748 3590 41738 210828;210829;210830 214294;214295;214296 214296 3 YSYYDESQGEIYR FVVSSDFCHWGQRFRYSYYDESQGEIYRSI FRYSYYDESQGEIYRSIEHLDKMGMSIIEQ R Y S Y R S 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 2 0 0 4 0 0 0 13 0 1671.7053 Q9Y316 Q9Y316 199 211 MEMO1 Protein MEMO1 yes yes 2 0.00015573 94.616 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1412 0.99351 4.5264 4 Median 1.1186 1.0835 NaN 1 0 Median 1.1643 0.98432 NaN 1 0 Median 1.0098 0.99766 NaN 1 1 Median 1.1811 0.98937 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8066500 3747600 4318900 2052900 872080 1180800 1566200 739150 827000 3417800 1666500 1751300 1029700 469890 559800 0 0 0 0 0 0 39749 4403 41739 210831;210832;210833;210834 214297;214298;214299 214297 3 YTAAVPYR DEHRCASKYGRDWERYTAAVPYRLLPGIF_ YGRDWERYTAAVPYRLLPGIF_________ R Y T Y R L 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 2 1 0 0 8 0 939.48142 Q9UBM7 Q9UBM7 462 469 DHCR7 7-dehydrocholesterol reductase yes yes 2 9.7011E-09 132.29 By MS/MS By MS/MS 1 3 1.0443 0.86151 3.7747 3 Median 0.87905 0.86151 NaN 1 1 Median 1.0494 0.86514 5.3272 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 83743000 40813000 42930000 3238300 1797400 1440900 80505000 39016000 41489000 0 0 0 0 0 0 0 0 0 0 0 0 39750 4241 41740 210835;210836;210837;210838 214300;214301;214302;214303 214301 4 YTAESSDTLCPR IVMPTTKEKCPRCWKYTAESSDTLCPRCAE CWKYTAESSDTLCPRCAEVVSGK_______ K Y T P R C 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 2 2 0 1 0 0 0 12 0 1398.6085 Q9NSE4 Q9NSE4 993 1004 IARS2 Isoleucine--tRNA ligase, mitochondrial yes yes 2 0.00059476 72.006 By MS/MS 1 1.4217 1.2155 NaN 1 Median NaN NaN NaN 0 0 Median 1.4217 1.2155 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2633700 1135400 1498300 0 0 0 2633700 1135400 1498300 0 0 0 0 0 0 0 0 0 0 0 0 39751 4103 41741 210839 214304;214305 214304 2 YTALNLIGPR MPKDSNLLLEDVTWKYTALNLIGPRAVDVL DVTWKYTALNLIGPRAVDVLSELSYAPMTP K Y T P R A 1 1 1 0 0 0 0 1 0 1 2 0 0 0 1 0 1 0 1 0 0 0 10 0 1116.6291 Q8NCN5;A8MT40 Q8NCN5 621 630 PDPR Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial yes no 2 0.0032464 73.26 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39752 3419 41742 210840 214306 214306 1 YTALVTLTTQHVK SSDAITQEFMDLRTRYTALVTLTTQHVKYI TRYTALVTLTTQHVKYISDALRRLEEEEKV R Y T V K Y 1 0 0 0 0 1 0 0 1 0 2 1 0 0 0 0 4 0 1 2 0 0 13 0 1473.8191 H3BPE1;H3BQK9;A0A590UJG2;Q9UPN3;H0Y390;E9PNZ4;E9PLY5 H3BPE1 1387 1399 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes no 2;3 4.3111E-07 141.95 By MS/MS By MS/MS By MS/MS 1 2 1 1.2039 1.1333 8.8541 4 Median 1.1339 1.1374 NaN 1 0 Median 1.3981 1.2307 12.174 2 0 Median 1.0243 1.1089 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39886000 17867000 22019000 18668000 9232300 9435800 17638000 6694100 10944000 3580000 1940700 1639400 0 0 0 0 0 0 0 0 0 39753 1220 41743 210841;210842;210843;210844 214307;214308;214309;214310;214311 214308 5 YTAQVDAEEK EKKFNALKVPVPEDKYTAQVDAEEKEDVKS VPEDKYTAQVDAEEKEDVKSCAEWVSLSKA K Y T E K E 2 0 0 1 0 1 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 10 0 1152.5299 O75947 O75947 86 95 ATP5H ATP synthase subunit d, mitochondrial yes yes 2 0.0039125 55.064 By matching By MS/MS 1 1 0.97352 0.89138 38.912 2 Median 0.69749 0.67697 NaN 1 0 Median 1.3588 1.1737 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2921300 1244000 1677300 864200 382550 481650 2057100 861410 1195700 0 0 0 0 0 0 0 0 0 0 0 0 39754 1711 41744 210845;210846 214312 214312 1 YTAQVDAEEKEDVK EKKFNALKVPVPEDKYTAQVDAEEKEDVKS KYTAQVDAEEKEDVKSCAEWVSLSKARIVE K Y T V K S 2 0 0 2 0 1 3 0 0 0 0 2 0 0 0 0 1 0 1 2 0 0 14 1 1623.7628 O75947 O75947 86 99 ATP5H ATP synthase subunit d, mitochondrial yes yes 3 0.031469 19.767 By matching By MS/MS 1 2 0.83808 0.8533 25.846 3 Median 0.83808 0.8533 NaN 1 0 Median 0.91351 0.82354 36.437 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5707000 2894100 2813000 3360100 1702500 1657600 2346900 1191600 1155300 0 0 0 0 0 0 0 0 0 0 0 0 39755 1711 41745 210847;210848;210849 214313;214314 214313 2 YTCGEAPDYDR RLLLEFTDTSYEEKRYTCGEAPDYDRSQWL EEKRYTCGEAPDYDRSQWLDVKFKLDLDFP R Y T D R S 1 1 0 2 1 0 1 1 0 0 0 0 0 0 1 0 1 0 2 0 0 0 11 0 1345.5245 A0A0A0MTN3;P21266 A0A0A0MTN3 37 47 GSTM3 Glutathione S-transferase Mu 3 yes no 2 0.0024672 53.327 By MS/MS 1 1.4364 1.2276 NaN 1 Median NaN NaN NaN 0 0 Median 1.4364 1.2276 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 601050 227420 373620 0 0 0 601050 227420 373620 0 0 0 0 0 0 0 0 0 0 0 0 39756 197 41746 210850 214315 214315 1 YTCSFCGK ______________________________ EISQHAKYTCSFCGKTKMKRRAVGIWHCGS K Y T G K T 0 0 0 0 2 0 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 0 8 0 1021.3997 C9J4Z3;P61513;M0R0A1;Q6P4E4;E9PEL3;M0R2L6;G5E9R3;A6NKH3 C9J4Z3 13 20 RPL37A;RPL37AP8 60S ribosomal protein L37a;Putative 60S ribosomal protein L37a-like protein yes no 2 0.0080329 64.567 By MS/MS By MS/MS 1 1 1.2224 1.0762 13.139 2 Median 1.2606 1.181 NaN 1 0 Median 1.1854 0.98073 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5911600 2557800 3353700 1298700 536090 762620 4612900 2021800 2591100 0 0 0 0 0 0 0 0 0 0 0 0 39757 676 41747 210851;210852 214316;214317;214318 214317 3 YTDLNSNDVTGLR RWKQYEAYVQALEGKYTDLNSNDVTGLRES GKYTDLNSNDVTGLRESEEKLKQQQQESAR K Y T L R E 0 1 2 2 0 0 0 1 0 0 2 0 0 0 0 1 2 0 1 1 0 0 13 0 1466.7001 Q15007;A0A087X1R4 Q15007 44 56 WTAP Pre-mRNA-splicing regulator WTAP yes no 2 3.6781E-40 209.1 By MS/MS By MS/MS 3 2 1.0245 0.89716 22.678 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.90481 0.89716 31.24 3 1 Median 1.0414 0.89237 2.3136 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 69865000 35469000 34396000 0 0 0 0 0 0 58531000 30171000 28360000 11334000 5298300 6035700 0 0 0 0 0 0 39758 2910 41748 210853;210854;210855;210856;210857 214319;214320;214321;214322;214323;214324 214323 5 YTEFLTGLGR NSELAILSNEHGSYRYTEFLTGLGRLIELK HGSYRYTEFLTGLGRLIELKDCQPDKVYLG R Y T G R L 0 1 0 0 0 0 1 2 0 0 2 0 0 1 0 0 2 0 1 0 0 0 10 0 1155.5924 A0A2R8Y7X5;A0A2R8Y6C9;A0A2R8Y5F1;A0A2R8YGU4;X5D2U8;H3BMQ0;A0A2R8YDZ2;A0A2R8YDR3;A0A2R8Y7C8;A0A2R8YGD6;P49815 A0A2R8Y7X5 1504 1513 TSC2 Tuberin yes no 2 0.03768 49.715 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39759 384 41749 210858 214325 214325 1 YTEGVQSLNWTK SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK DLKYTEGVQSLNWTKIMKTIVDDPEGFFEQ K Y T T K I 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 2 1 1 1 0 0 12 0 1424.6936 Q9Y5B9 Q9Y5B9 893 904 SUPT16H FACT complex subunit SPT16 yes yes 2 4.1172E-06 112.75 By MS/MS By matching By MS/MS By MS/MS By matching 2 1 1 1 2 1.1837 1.0985 27.233 7 Median 0.70989 0.6973 15.2 2 2 Median 1.1088 1.0985 NaN 1 0 Median 1.2553 1.3491 NaN 1 1 Median NaN NaN NaN 0 0 Median 1.1837 1.2389 NaN 1 0 Median 1.2693 1.0673 9.5382 2 0 Median 38034000 19248000 18786000 17281000 9982000 7299400 370380 156330 214050 5776100 2310900 3465200 0 0 0 9462000 4446900 5015100 5144000 2351500 2792500 39760 4456 41750 210859;210860;210861;210862;210863;210864;210865 214326;214327;214328;214329;214330 214330 5 YTEHSTVGLAQQWDQLDQLGMR DLGAAMEEALILDNKYTEHSTVGLAQQWDQ GLAQQWDQLDQLGMRMQHNLEQQIQARNTT K Y T M R M 1 1 0 2 0 4 1 2 1 0 3 0 1 0 0 1 2 1 1 1 0 0 22 0 2575.2125 A0A0D9SF54;Q13813 Q13813 2282 2303 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 no no 3 3.5435E-29 129.12 By MS/MS By MS/MS By MS/MS By matching By matching 2 4 5 3 1 1.0369 0.99149 24.372 15 Median 1.4284 1.3688 20.043 2 0 Median 1.2526 1.0597 11.761 4 2 Median 0.83392 0.90558 22.185 5 2 Median 1.1266 0.99573 6.9051 3 0 Median NaN NaN NaN 0 0 Median 0.79299 0.66575 NaN 1 0 Median 112130000 55644000 56490000 20496000 8807000 11689000 10139000 4461000 5678300 79165000 41296000 37869000 2086500 978600 1107900 0 0 0 247130 100540 146580 39761 264;2838 41751;41752 210866;210867;210868;210869;210870;210871;210872;210873;210874;210875;210876;210877;210878;210879;210880 214331;214332;214333;214334;214335;214336;214337;214338;214339;214340;214341;214342 214342 131 12 YTEITATYFQGVR NKPEDCPYLWAHMKKYTEITATYFQGVRLD KKYTEITATYFQGVRLDNCHSTPLHVAEYM K Y T V R L 1 1 0 0 0 1 1 1 0 1 0 0 0 1 0 0 3 0 2 1 0 0 13 0 1547.762 P35573 P35573 512 524 AGL Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase yes yes 2 5.1709E-07 107.24 By MS/MS By matching 1 1 1.0899 0.99298 0.89676 2 Median 1.0337 0.9993 NaN 1 0 Median 1.1491 0.9867 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4747800 2440300 2307500 3994600 2106000 1888700 753150 334320 418840 0 0 0 0 0 0 0 0 0 0 0 0 39762 2243 41753 210881;210882 214343 214343 1 YTELEYIHALTLLHR TADELLNLVVDQGVKYTELEYIHALTLLHR YTELEYIHALTLLHRSQTGVGELTTQNTRL K Y T H R S 1 1 0 0 0 0 2 0 2 1 4 0 0 0 0 0 2 0 2 0 0 0 15 0 1870.9941 Q96A65 Q96A65 920 934 EXOC4 Exocyst complex component 4 yes yes 3 0.014512 22.803 By MS/MS 1 0.7465 0.80018 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.7465 0.80018 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3734700 1938800 1795900 0 0 0 0 0 0 3734700 1938800 1795900 0 0 0 0 0 0 0 0 0 39763 3595 41754 210883 214344 214344 1 YTELQLEAAKR KKMQAGEEVTELRRKYTELQLEAAKRGILS LRRKYTELQLEAAKRGILSSGRGRGIHSRG K Y T K R G 2 1 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 11 1 1320.7038 Q5T8P6 Q5T8P6 838 848 RBM26 RNA-binding protein 26 no no 3 0.0011459 47.288 By matching By MS/MS By matching 1 1 1 0.88694 0.93247 45.784 3 Plateau NaN NaN NaN 0 0 Median 0.79011 0.68372 NaN 1 0 Median 0.88694 1.0078 NaN 1 0 Median 0.47413 0.40473 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5013900 2639200 2374700 0 0 0 1773400 837750 935670 2826400 1529400 1297000 414160 272080 142080 0 0 0 0 0 0 39764 3097 41755 210884;210885;210886 214345 214345 1 YTEMDYAR FTNRTKEEVNEWFTKYTEMDYARAGNKAAF VNEWFTKYTEMDYARAGNKAAFTVSLDPGP K Y T A R A 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 8 0 1047.4331 Q9UKD2 Q9UKD2 119 126 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0057517 74.127 By MS/MS By matching By matching By MS/MS By MS/MS 2 1 1 1 3 1.2877 1.0808 21.657 8 Median 1.1951 1.1425 13.187 2 0 Median 0.74705 0.63547 NaN 1 0 Median 1.3284 1.2741 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1128 1.1188 NaN 1 0 Median 1.2905 1.0622 3.9736 3 0 Median 29756000 13482000 16275000 6335800 2732700 3603100 1256800 763500 493300 5740700 2582600 3158100 0 0 0 11771000 5462900 6308300 4651900 1940100 2711800 39765 4308 41756 210887;210888;210889;210890;210891;210892;210893;210894 214346;214347;214348;214349;214350;214351 214351 6 YTEQITNEK LDVLEEIPKNAAYRKYTEQITNEKLAMVKA NAAYRKYTEQITNEKLAMVKAPIIMQIISS K Y T E K L 0 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 2 0 1 0 0 0 9 0 1124.535 F8WAS3;Q16718;C9IZN5;A0A087X1G1;H7BYD0 F8WAS3 47 55 NDUFA5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 yes no 2 0.0066905 69.423 By MS/MS 1 1.1361 0.94727 NaN 1 Median NaN NaN NaN 0 0 Median 1.1361 0.94727 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2419900 1107500 1312400 0 0 0 2419900 1107500 1312400 0 0 0 0 0 0 0 0 0 0 0 0 39766 1093 41757 210895 214352 214352 1 YTEVFPPTPVRPAFSFYETLR PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS PTPVRPAFSFYETLRERSSLLPRLDKPCPA R Y T L R E 1 2 0 0 0 0 2 0 0 0 1 0 0 3 4 1 3 0 2 2 0 0 21 1 2516.274 Q9H6R4;A0A0A0MRW6 Q9H6R4 695 715 NOL6 Nucleolar protein 6 yes no 3 0.027305 14.161 By MS/MS By matching 1 2 0.61282 0.66584 23.668 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67664 0.82294 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.54528 0.58447 18.433 2 0 Median NaN NaN NaN 0 0 Median 5918200 3502000 2416200 0 0 0 0 0 0 2346600 1376000 970540 0 0 0 3571700 2125900 1445700 0 0 0 39767 3976 41758 210896;210897;210898 214353 214353 1 YTFAAHMDGTYK DNKGIYKGDRESSGKYTFAAHMDGTYKFCF SGKYTFAAHMDGTYKFCFSNRMSTMTPKIV K Y T Y K F 2 0 0 1 0 0 0 1 1 0 0 1 1 1 0 0 2 0 2 0 0 0 12 0 1403.618 Q15363;E7EQ72 Q15363 80 91 TMED2 Transmembrane emp24 domain-containing protein 2 yes no 2 4.102E-06 131.28 By MS/MS By MS/MS 1 1 1.3 1.1661 3.2549 2 Median 1.2108 1.1395 NaN 1 0 Median 1.3958 1.1932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 43156000 18780000 24376000 27060000 12402000 14658000 16096000 6377900 9717800 0 0 0 0 0 0 0 0 0 0 0 0 39768 876 41759 210899;210900 214354;214355;214356 214355 3 YTFAPSVSLNK SKPQKASAPAADPPRYTFAPSVSLNKTARP DPPRYTFAPSVSLNKTARPFGAPPPADSAP R Y T N K T 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 2 1 0 1 1 0 0 11 0 1225.6343 D6RF83;H7BYK4;D6RH06;Q9NR12 D6RF83 104 114 PDLIM7 PDZ and LIM domain protein 7 yes no 2 0.0074467 42.348 By MS/MS By matching 1 1 0.83438 0.74771 7.8336 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81145 0.79029 NaN 1 0 Median 0.85796 0.70742 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8400800 3256500 5144200 0 0 0 0 0 0 7853500 2932700 4920700 547340 323810 223520 0 0 0 0 0 0 39769 825 41760 210901;210902 214357 214357 1 YTGAGLSGR VAKLWEISTGRTLVRYTGAGLSGRQVHRTQ GRTLVRYTGAGLSGRQVHRTQAVFNHTEDY R Y T G R Q 1 1 0 0 0 0 0 3 0 0 1 0 0 0 0 1 1 0 1 0 0 0 9 0 880.44028 Q05048 Q05048 344 352 CSTF1 Cleavage stimulation factor subunit 1 yes yes 2 0.012105 61.679 By MS/MS 1 1.3105 1.3098 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3105 1.3098 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6152000 2964900 3187100 0 0 0 0 0 0 6152000 2964900 3187100 0 0 0 0 0 0 0 0 0 39770 2716 41761 210903 214358 214358 1 YTGASLQGATQLNNK DDCPVFPGLFEFCSRYTGASLQGATQLNNK YTGASLQGATQLNNKICDIAINWAGGLHHA R Y T N K I 2 0 2 0 0 2 0 2 0 0 2 1 0 0 0 1 2 0 1 0 0 0 15 0 1564.7845 O15379 O15379 107 121 HDAC3 Histone deacetylase 3 yes yes 2 6.3532E-08 98.156 By matching By MS/MS By MS/MS 1 2 2 0.93563 0.90891 13.034 5 Median NaN NaN NaN 0 0 Median 1.2554 1.086 NaN 1 0 Median 0.7414 0.81356 10.874 2 0 Median 0.97447 0.91344 0.7042 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17924000 9532800 8390900 0 0 0 268410 121010 147400 8982900 5071000 3911900 8672400 4340800 4331700 0 0 0 0 0 0 39771 1541 41762 210904;210905;210906;210907;210908 214359;214360;214361;214362 214361 4 YTGEDFDEDLR WMNGLSVYQIKVHRKYTGEDFDEDLRTVLR VHRKYTGEDFDEDLRTVLRRSGCKNEKIAF K Y T L R T 0 1 0 3 0 0 2 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 11 0 1358.5626 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 2967 2977 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes no 2 0.00011507 147.2 By MS/MS By MS/MS By MS/MS 1 1 1 0.9649 0.98682 9.1432 3 Plateau 1.0365 1.0078 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88202 0.92979 NaN 1 0 Median 0.9649 0.83969 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 35914000 17690000 18224000 22313000 10837000 11477000 0 0 0 12430000 6393200 6036900 1170600 460100 710530 0 0 0 0 0 0 39772 2865 41763 210909;210910;210911 214363;214364;214365;214366;214367 214365 5 YTGYGNAAGLLAAR FLFVLCSESVPRFIKYTGYGNAAGLLAARG KYTGYGNAAGLLAARGLMAGGRPEGQYSED K Y T A R G 4 1 1 0 0 0 0 3 0 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1396.7099 Q9NPQ8;H0YE35;B7WPL0;Q9NVN3 Q9NPQ8 410 423 RIC8A;RIC8B Synembryn-A;Synembryn-B yes no 2 3.036E-05 136.63 By MS/MS By matching By matching 1 1 1 1.1961 1.1341 22.808 3 Plateau 1.1961 1.1341 NaN 1 0 Median 1.1728 1.0169 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.83147 0.73177 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16234000 7513400 8720900 13383000 6248700 7134500 2660700 1159000 1501700 0 0 0 190450 105690 84764 0 0 0 0 0 0 39773 4057 41764 210912;210913;210914 214368 214368 1 YTHAANTVVYSSNK KRTLYSKKYGVDLIRYTHAANTVVYSSNKI RYTHAANTVVYSSNKIDDTIRYLSLHDNKY R Y T N K I 2 0 2 0 0 0 0 0 1 0 0 1 0 0 0 2 2 0 2 2 0 0 14 0 1553.7474 Q6UXN9 Q6UXN9 71 84 WDR82 WD repeat-containing protein 82 yes yes 2;3 1.1034E-05 88.441 By MS/MS By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 3 2 2 2 1.027 0.92682 12.241 13 Median 1.0509 1.0317 2.1848 2 0 Median 1.2487 1.0501 0.46898 2 0 Median 0.96286 0.92682 4.4942 3 0 Plateau 1.1942 1.003 1.0801 2 0 Median 0.77826 0.78572 20.319 2 0 Median 1.0438 0.87268 3.453 2 0 Median 45975000 21718000 24257000 3686600 1742600 1944000 5586600 2379500 3207000 16414000 8207100 8206500 16197000 7258400 8938200 2498600 1393700 1104900 1593300 736430 856830 39774 3190 41765 210915;210916;210917;210918;210919;210920;210921;210922;210923;210924;210925;210926;210927 214369;214370;214371;214372;214373;214374;214375;214376;214377;214378;214379 214375 11 YTHAANTVVYSSNKIDDTIR KRTLYSKKYGVDLIRYTHAANTVVYSSNKI NTVVYSSNKIDDTIRYLSLHDNKYIRYFPG R Y T I R Y 2 1 2 2 0 0 0 0 1 2 0 1 0 0 0 2 3 0 2 2 0 0 20 1 2267.1182 Q6UXN9 Q6UXN9 71 90 WDR82 WD repeat-containing protein 82 yes yes 3 2.0337E-15 85.61 By MS/MS 1 1.1162 1.118 NaN 1 Median 1.1162 1.118 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8232900 3767500 4465400 8232900 3767500 4465400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39775 3190 41766 210928 214380 214380 1 YTHLVDQDTTSFDSAWGQESAQNTK KVMQVKNFGRSGRTKYTHLVDQDTTSFDSA SFDSAWGQESAQNTKFFKQKAAGVRDVFER K Y T T K F 2 0 1 3 0 3 1 1 1 0 1 1 0 1 0 3 4 1 1 1 0 0 25 0 2828.2525 P55081 P55081 391 415 MFAP1 Microfibrillar-associated protein 1 yes yes 3 2.9658E-17 66.853 By MS/MS By MS/MS 1 1 1.0263 0.99173 6.1846 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0587 1.0361 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.99497 0.94929 NaN 1 0 Median NaN NaN NaN 0 0 Median 18804000 8337500 10466000 0 0 0 0 0 0 9322200 4086000 5236200 0 0 0 9481400 4251600 5229800 0 0 0 39776 2495 41767 210929;210930 214381;214382;214383 214381 3 YTIENPR MWSEGNGSHTIRDLKYTIENPRHFVDSHHQ SHTIRDLKYTIENPRHFVDSHHQKPVNAII K Y T P R H 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 7 0 891.44503 Q7KZF4 Q7KZF4 178 184 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0061442 94.262 By MS/MS By MS/MS By MS/MS 1 2 3 1.326 1.1122 10.292 6 Median 1.0392 1.0328 NaN 1 0 Median 1.326 1.1122 2.9392 2 0 Median NaN NaN NaN 0 0 Median 1.4777 1.258 12.274 3 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16757000 7989800 8767000 1744000 882850 861130 10382000 4660900 5721100 0 0 0 4630800 2446000 2184800 0 0 0 0 0 0 39777 3214 41768 210931;210932;210933;210934;210935;210936 214384;214385;214386;214387;214388;214389 214387 6 YTIGLGQAK DQAELEKYDGVDAGKYTIGLGQAKMGFCTD GVDAGKYTIGLGQAKMGFCTDREDINSLCM K Y T A K M 1 0 0 0 0 1 0 2 0 1 1 1 0 0 0 0 1 0 1 0 0 0 9 0 949.52328 Q01581;D6RIW1 Q01581 47 55 HMGCS1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic yes no 2 0.0051955 72.789 By MS/MS By MS/MS 1 1 1.3953 1.2426 0.92462 2 Median 1.3199 1.2345 NaN 1 1 Median 1.475 1.2508 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17480000 7193100 10287000 7825500 3526800 4298800 9654800 3666300 5988500 0 0 0 0 0 0 0 0 0 0 0 0 39778 2687 41769 210937;210938 214390;214391 214390 2 YTIHSQLEHLQSK ______________________________ DRYTIHSQLEHLQSKYIGTGHADTTKWEWL R Y T S K Y 0 0 0 0 0 2 1 0 2 1 2 1 0 0 0 2 1 0 1 0 0 0 13 0 1582.8104 Q9BWJ5 Q9BWJ5 5 17 SF3B5 Splicing factor 3B subunit 5 yes yes 2;3 9.3737E-23 203.03 By MS/MS By MS/MS By MS/MS By matching By MS/MS 2 2 2 2 1 1.0823 0.92989 13.773 9 Median 1.044 0.96863 16.984 2 0 Median 1.0704 0.88176 7.5171 2 0 Median 0.98484 0.93751 6.374 2 0 Median NaN NaN NaN 0 0 Median 1.1225 1.1991 3.6571 2 0 Median 1.129 0.92015 NaN 1 0 Median 114860000 53639000 61217000 7150800 3719100 3431700 41548000 19182000 22366000 51353000 23775000 27579000 0 0 0 8830800 4241900 4588900 5973500 2721600 3251900 39779 3873 41770 210939;210940;210941;210942;210943;210944;210945;210946;210947 214392;214393;214394;214395;214396;214397;214398;214399;214400 214396 9 YTIIPLNK VTGKKLLERGELKRRYTIIPLNKISARCIA RGELKRRYTIIPLNKISARCIAPETLRVAQ R Y T N K I 0 0 1 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 0 0 0 8 0 960.56442 O95347 O95347 573 580 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.018651 47.75 By MS/MS By matching By MS/MS By MS/MS By matching 1 1 1 1 1 1.0448 1.0182 15.777 5 Median 1.0448 1.0182 NaN 1 0 Median 0.96047 0.84163 NaN 1 0 Median 1.1129 1.19 NaN 1 0 Median 1.009 0.86126 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3691 1.139 NaN 1 0 Median 20046000 9482500 10563000 5437000 2788200 2648800 2392300 1245900 1146400 8800600 3742700 5057800 2492800 1346700 1146100 0 0 0 923030 358980 564050 39780 1766 41771 210948;210949;210950;210951;210952 214401;214402;214403 214402 3 YTISQEAYDQR GARLGEYEDVSRVEKYTISQEAYDQRQDTV RVEKYTISQEAYDQRQDTVRSFLKRSKLGR K Y T Q R Q 1 1 0 1 0 2 1 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 11 0 1372.6259 K7EK42;A0A494C0X0;Q99426;K7EP07 K7EK42 107 117 TBCB Tubulin-folding cofactor B yes no 2 1.8678E-21 193.38 By MS/MS By MS/MS By MS/MS 1 3 1 1.0515 0.98236 21.039 5 Median 1.0515 0.98236 NaN 1 0 Median 1.1521 0.95797 26.684 3 0 Median 1.0182 1.007 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 76400000 35157000 41243000 44902000 20988000 23915000 27418000 12652000 14767000 4079200 1517800 2561500 0 0 0 0 0 0 0 0 0 39781 462 41772 210953;210954;210955;210956;210957 214404;214405;214406;214407;214408;214409;214410 214408 7 YTISQEAYDQRQDTVR GARLGEYEDVSRVEKYTISQEAYDQRQDTV TISQEAYDQRQDTVRSFLKRSKLGRYNEEE K Y T V R S 1 2 0 2 0 3 1 0 0 1 0 0 0 0 0 1 2 0 2 1 0 0 16 1 1971.9286 K7EK42;A0A494C0X0;Q99426;K7EP07 K7EK42 107 122 TBCB Tubulin-folding cofactor B yes no 3 1.7571E-10 105.46 By MS/MS By MS/MS 1 1 0.96117 0.91906 10.144 2 Median 0.91718 0.9874 NaN 1 0 Median 1.0073 0.85544 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22214000 10945000 11270000 18647000 9283800 9362800 3567600 1660900 1906700 0 0 0 0 0 0 0 0 0 0 0 0 39782 462 41773 210958;210959 214411;214412 214411 2 YTIVQQQIPSFLQK ERIQEDYNDKYWDQRYTIVQQQIPSFLQKM RYTIVQQQIPSFLQKMADKILSTGKYLNVV R Y T Q K M 0 0 0 0 0 4 0 0 0 2 1 1 0 1 1 1 1 0 1 1 0 0 14 0 1691.9247 Q9BSJ2;F2Z2B9;B3KTU7 Q9BSJ2 432 445 TUBGCP2 Gamma-tubulin complex component 2 yes no 2 0.012906 32.218 By MS/MS By matching 1 1 0.74635 0.77409 15.006 2 Median 0.8698 0.86075 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.64042 0.69616 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5710000 3094400 2615600 2992500 1509500 1482900 0 0 0 2717500 1584800 1132700 0 0 0 0 0 0 0 0 0 39783 3815 41774 210960;210961 214413 214413 1 YTLETRPNQEGIDVR GNPKHPFSKFGTGNKYTLETRPNQEGIDVR YTLETRPNQEGIDVRQELLKFHSAYYSSNL K Y T V R Q 0 2 1 1 0 1 2 1 0 1 1 0 0 0 1 0 2 0 1 1 0 0 15 1 1789.8959 P14735;A0A3B3ISG5;Q5T5N3 P14735 224 238 IDE Insulin-degrading enzyme yes no 2;3 9.8877E-06 93.258 By MS/MS By MS/MS By matching 2 2 1 1.79 2.8237 65.303 5 Linear 2.1823 2.4246 28.03 2 0 Median 1.5241 1.4694 22.847 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.58693 0.52137 NaN 1 0 Median 64380000 24000000 40380000 47738000 17759000 29979000 16077000 5872100 10204000 0 0 0 0 0 0 0 0 0 565850 368930 196920 39784 423 41775 210962;210963;210964;210965;210966 214414;214415;214416;214417;214418 214416 5 YTLFSASSEGQNHSR GELLQWDLTQSWRRKYTLFSASSEGQNHSR YTLFSASSEGQNHSRIVFNLCPLQTEDDKQ K Y T S R I 1 1 1 0 0 1 1 1 1 0 1 0 0 1 0 4 1 0 1 0 0 0 15 0 1682.7649 Q8TEQ6 Q8TEQ6 321 335 GEMIN5 Gem-associated protein 5 yes yes 3 0.00063795 38.093 By MS/MS By matching 1 1 1.2863 1.1832 11.198 2 Median 1.3344 1.2807 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2399 1.0931 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5623800 2290800 3333000 4574400 1801500 2772900 0 0 0 0 0 0 1049300 489260 560040 0 0 0 0 0 0 39785 3478 41776 210967;210968 214419 214419 1 YTLHVVDSPTVKPSR SVSLDLCDGDTGEPRYTLHVVDSPTVKPSR YTLHVVDSPTVKPSRDNHFAIFIIPQGRET R Y T S R D 0 1 0 1 0 0 0 0 1 0 1 1 0 0 2 2 2 0 1 3 0 0 15 1 1697.9101 Q8N6R0 Q8N6R0 282 296 METTL13 Methyltransferase-like protein 13 yes yes 3 0.0058571 54.501 By MS/MS 1 1.3 1.2277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3 1.2277 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2759900 639240 2120700 0 0 0 0 0 0 0 0 0 2759900 639240 2120700 0 0 0 0 0 0 39786 3388 41777 210969 214420 214420 0 YTLLLGQDENSVIK YFAYVQMFNSRILTKYTLLLGQDENSVIKS KYTLLLGQDENSVIKSFTASVDRKFISLMS K Y T I K S 0 0 1 1 0 1 1 1 0 1 3 1 0 0 0 1 1 0 1 1 0 0 14 0 1591.8457 Q9H8H0;J3QR28 Q9H8H0 192 205 NOL11 Nucleolar protein 11 yes no 2 0.00041981 70.977 By MS/MS By MS/MS 1 1 0.38247 0.39721 18.801 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.33279 0.34777 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.43957 0.45369 NaN 1 1 Median NaN NaN NaN 0 0 Median 11101000 7413500 3687500 0 0 0 0 0 0 5885700 4089000 1796700 0 0 0 5215300 3324500 1890800 0 0 0 39787 3990 41778 210970;210971 214421;214422 214422 2 YTLNNWLATVTLGQAGMHATYYHK RRPGEEGTVMSLAGKYTLNNWLATVTLGQA VTLGQAGMHATYYHKASDQLQVGVEFEAST K Y T H K A 3 0 2 0 0 1 0 2 2 0 3 1 1 0 0 0 4 1 3 1 0 0 24 0 2752.3432 O96008;K7EKG4 O96008 254 277 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes no 3;4 5.6416E-06 38.237 By MS/MS By matching 3 1 1.303 1.1177 30.473 4 Median NaN NaN NaN 0 0 Median 1.3185 1.125 8.0303 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.78552 0.6455 NaN 1 0 Median 10858000 4809100 6048700 0 0 0 10786000 4770600 6015700 0 0 0 0 0 0 0 0 0 71401 38477 32924 39788 1806 41779 210972;210973;210974;210975 214423;214424;214425 214424 3 YTLNVLEDLGDGQK NQTLTLALVWQLMRRYTLNVLEDLGDGQKA RYTLNVLEDLGDGQKANDDIIVNWVNRTLS R Y T Q K A 0 0 1 2 0 1 1 2 0 0 3 1 0 0 0 0 1 0 1 1 0 0 14 0 1563.7781 P13797;A0A0A0MSQ0 P13797 505 518 PLS3 Plastin-3 yes no 2 7.8822E-09 161.19 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 4 1 1 3 1.1027 0.99731 17.333 12 Median 1.124 1.0414 29.018 3 0 Median 1.2124 1.0178 13.204 4 1 Median 1.0771 1.1266 NaN 1 0 Median 1.2117 1.0414 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0135 0.88791 5.7982 3 0 Median 227400000 101020000 126370000 56151000 25672000 30479000 162910000 71467000 91446000 5803000 2805200 2997800 674850 301730 373120 0 0 0 1852800 775860 1077000 39789 1995 41780 210976;210977;210978;210979;210980;210981;210982;210983;210984;210985;210986;210987 214426;214427;214428;214429;214430;214431;214432;214433;214434;214435;214436;214437;214438;214439;214440;214441;214442;214443 214427 18 YTLPLYHAMMGGSEVAQTLAK FWKVKEFLHNQGKQKYTLPLYHAMMGGSEV HAMMGGSEVAQTLAKETFASTASQLHSNVV K Y T A K E 3 0 0 0 0 1 1 2 1 0 3 1 2 0 1 1 2 0 2 1 0 0 21 0 2280.1283 Q9H4A4;A6NKB8 Q9H4A4 603 623 RNPEP Aminopeptidase B yes no 3 0.023153 14.161 By MS/MS By matching 1 1 1.1404 1.0381 15.762 2 Median 0.96651 0.92865 NaN 1 0 Median 1.3457 1.1605 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6274300 3131700 3142600 3711500 1974100 1737400 2562800 1157600 1405200 0 0 0 0 0 0 0 0 0 0 0 0 39790 3964 41781 210988;210989 214444 214444 1 YTLSQQPWAQPAK KVSALKTMASQGGPKYTLSQQPWAQPAKVN PKYTLSQQPWAQPAKVNDLAATAYKTIKTK K Y T A K V 2 0 0 0 0 3 0 0 0 0 1 1 0 0 2 1 1 1 1 0 0 0 13 0 1516.7674 Q96JB2 Q96JB2 733 745 COG3 Conserved oligomeric Golgi complex subunit 3 yes yes 2 0.026794 27.329 By MS/MS 1 0.85042 0.81121 NaN 1 Median 0.85042 0.81121 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3995300 2275000 1720300 3995300 2275000 1720300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39791 3683 41782 210990 214445 214445 1 YTMGDAPDYDR RLLLEYTDSSYEEKKYTMGDAPDYDRSQWL EEKKYTMGDAPDYDRSQWLNEKFKLGLDFP K Y T D R S 1 1 0 3 0 0 0 1 0 0 0 0 1 0 1 0 1 0 2 0 0 0 11 0 1302.5187 E9PHN7;P28161;E9PLF1;E9PHN6;F6XZQ7;A0A0A0MR85;H3BQT3;B9ZVX7;E7EWW9;Q03013;P09488 E9PHN7 33 43 GSTM2;GSTM4;GSTM1 Glutathione S-transferase Mu 2;Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1 yes no 2 0.00014909 83.499 By MS/MS By MS/MS 1 1 0.85012 0.76188 48.657 2 Median 0.57124 0.54009 NaN 1 0 Median 1.2652 1.0748 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8366900 4628200 3738700 6627900 3939400 2688400 1739000 688760 1050300 0 0 0 0 0 0 0 0 0 0 0 0 39792 935 41783 210991;210992 214446;214447;214448 214446 3 YTNLVTGWQYR QYSDHMENVYGYLMKYTNLVTGWQYRFFVL YLMKYTNLVTGWQYRFFVLNNEAGLLEYFV K Y T Y R F 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 2 1 2 1 0 0 11 0 1399.6884 Q9BXB4 Q9BXB4 68 78 OSBPL11 Oxysterol-binding protein-related protein 11 yes yes 2 0.00014653 83.948 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.2431 1.2843 28.879 4 Median 1.067 1.0312 NaN 1 0 Median 1.1002 0.95336 NaN 1 0 Median 1.4044 1.5996 NaN 1 0 Median 1.726 1.6587 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9668200 5073300 4594900 3795200 2201300 1593900 3814100 2162400 1651800 1498400 518540 979880 560400 191090 369320 0 0 0 0 0 0 39793 3878 41784 210993;210994;210995;210996 214449;214450;214451 214449 3 YTPESLWR ELQQLLFSVPPGYLRYTPESLWRDLISEHR VPPGYLRYTPESLWRDLISEHRGLEELINK R Y T W R D 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 1 1 0 0 0 8 0 1050.5134 Q7Z7L1 Q7Z7L1 407 414 SLFN11 Schlafen family member 11 yes yes 2 0.076219 29.149 By MS/MS By matching By matching By matching 1 1 1 1 0.92207 0.78463 14.161 4 Median 0.74194 0.72854 NaN 1 0 Median 0.90706 0.78756 NaN 1 0 Median 0.93733 1.0071 NaN 1 0 Median 0.93859 0.78171 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7981600 4648900 3332700 2448000 1353700 1094300 2300300 1345000 955290 3033800 1849900 1183900 199540 100370 99173 0 0 0 0 0 0 39794 3262 41785 210997;210998;210999;211000 214452 214452 1 YTPLKENWMK SGKEETRKIPVPANRYTPLKENWMKIFTPI VPANRYTPLKENWMKIFTPIVEHLGLQIRF R Y T M K I 0 0 1 0 0 0 1 0 0 0 1 2 1 0 1 0 1 1 1 0 0 0 10 1 1308.6536 Q9NRX1;F8WBJ6 Q9NRX1 85 94 PNO1 RNA-binding protein PNO1 yes no 3 0.0089462 34.755 By matching By matching By MS/MS 1 1 1 1.055 1.124 27.857 3 Plateau NaN NaN NaN 0 0 Median 0.71301 0.65506 NaN 1 0 Median 0.95356 0.96651 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.055 1.124 NaN 1 0 Median NaN NaN NaN 0 0 Median 7370400 3309900 4060500 0 0 0 488210 285550 202660 1697500 839040 858470 0 0 0 5184600 2185300 2999400 0 0 0 39795 4091 41786 211001;211002;211003 214453 214453 1 YTPSGQAGAAASESLFVSNHAY YVKRALANSLACQGKYTPSGQAGAAASESL GAAASESLFVSNHAY_______________ K Y T A Y - 5 0 1 0 0 1 1 2 1 0 1 0 0 1 1 4 1 0 2 1 0 0 22 0 2227.0182 J3KPS3;P04075;H3BR68 J3KPS3 347 368 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A yes no 2;3 6.3166E-57 164.2 By MS/MS By MS/MS 6 2 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 477560000 0 0 417170000 0 0 0 0 0 60385000 0 0 0 0 0 0 0 0 0 0 0 39796 1310 41787 211004;211005;211006;211007;211008;211009;211010;211011 214454;214455;214456;214457;214458;214459;214460;214461;214462;214463;214464;214465;214466;214467 214455 14 YTPSQQGVAFNSGAK PVRAADKLAPAQYIRYTPSQQGVAFNSGAK YTPSQQGVAFNSGAKQRVIRMVEMQKDPME R Y T A K Q 2 0 1 0 0 2 0 2 0 0 0 1 0 1 1 2 1 0 1 1 0 0 15 0 1553.7474 Q13573;G3V3A4;G3V4X8 Q13573 179 193 SNW1 SNW domain-containing protein 1 yes no 2 9.9416E-06 77.593 By MS/MS By MS/MS By MS/MS By MS/MS 2 1 1 1 1.0281 1.0762 39.169 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0949 1.1414 8.3092 2 2 Median 2.1084 1.8012 NaN 1 1 Median 0.66311 0.68068 NaN 1 1 Median 0.90911 0.74847 NaN 1 0 Median 25627000 12936000 12691000 0 0 0 0 0 0 12281000 5843600 6437500 1607500 560880 1046600 7398800 4500600 2898200 4339600 2030600 2309000 39797 2826 41788 211012;211013;211014;211015;211016 214468;214469;214470;214471;214472;214473 214468 6 YTPTQQGNMQVLVTYGGDPIPK DLDIIDNYDYSHTVKYTPTQQGNMQVLVTY NMQVLVTYGGDPIPKSPFTVGVAAPLDLSK K Y T P K S 0 0 1 1 0 3 0 3 0 1 1 1 1 0 3 0 3 0 2 2 0 0 22 0 2406.1889 O75369;E7EN95 O75369 910 931 FLNB Filamin-B yes no 2;3 9.2916E-12 67.358 By MS/MS By matching By matching 3 1 1 0.68849 0.6507 19.219 5 Median 0.68849 0.68727 9.0112 3 1 Median 0.73018 0.6507 NaN 1 0 Median 0.4122 0.45756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 27029000 15834000 11196000 25046000 14548000 10498000 371420 185230 186190 1612100 1100500 511520 0 0 0 0 0 0 0 0 0 39798 1664 41789 211017;211018;211019;211020;211021 214474;214475;214476;214477 214475 4 YTPTSPSYSPSSPEYTPTSPK SYSPSSPSYSPTSPKYTPTSPSYSPSSPEY SYSPSSPEYTPTSPKYSPTSPKYSPTSPKY K Y T P K Y 0 0 0 0 0 0 1 0 0 0 0 1 0 0 6 6 4 0 3 0 0 0 21 0 2273.0376 A0A590UJN4;A0A590UKB6;P24928 A0A590UJN4 1839 1859 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 5.2454E-12 81.311 By MS/MS 1 0.2809 0.31286 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.2809 0.31286 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5045100 3803400 1241600 0 0 0 0 0 0 5045100 3803400 1241600 0 0 0 0 0 0 0 0 0 39799 486 41790 211022 214478 214478 1 YTPVQQGPVGVNVTYGGDPIPK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK K Y T P K S 0 0 1 1 0 2 0 4 0 1 0 1 0 0 4 0 2 0 2 4 0 0 22 0 2285.1692 P21333;Q60FE5;A0A087WWY3 P21333 937 958 FLNA Filamin-A no no 2;3 2.2109E-15 97.904 By MS/MS By MS/MS By MS/MS By matching By MS/MS 5 4 2 2 2 0.58165 0.56976 16.652 15 Median 0.60145 0.57468 10.636 5 0 Median 0.56947 0.50433 7.897 4 0 Median 0.53707 0.59184 5.3772 2 0 Median 0.57436 0.52467 2.7479 2 0 Median 0.78481 0.82314 2.2733 2 0 Median NaN NaN NaN 0 0 Median 415100000 248600000 166500000 338170000 200450000 137720000 30059000 18908000 11152000 36624000 23139000 13485000 1025000 662220 362810 9225500 5439300 3786200 0 0 0 39800 2088;3120 41791 211023;211024;211025;211026;211027;211028;211029;211030;211031;211032;211033;211034;211035;211036;211037 214479;214480;214481;214482;214483;214484;214485;214486;214487;214488;214489;214490;214491;214492;214493;214494;214495 214479 17 YTQGGLENLELSR NPHNHLYCQQYAEVKYTQGGLENLELSRKY VKYTQGGLENLELSRKYFAQALKLNNRNMR K Y T S R K 0 1 1 0 0 1 2 2 0 0 3 0 0 0 0 1 1 0 1 0 0 0 13 0 1478.7365 Q15006 Q15006 200 212 EMC2 ER membrane protein complex subunit 2 yes yes 2 7.441E-07 120.06 By MS/MS By matching By MS/MS By matching By matching 1 1 1 2 1 1.285 1.1382 8.7832 6 Median 1.1465 1.0728 NaN 1 0 Median 1.3567 1.1329 NaN 1 0 Median 1.1622 1.1435 NaN 1 0 Median 1.3838 1.1713 16.266 2 0 Median NaN NaN NaN 0 0 Median 1.5381 1.2464 NaN 1 0 Median 34309000 15785000 18524000 19635000 9299200 10335000 3927700 1701300 2226400 7226200 3446700 3779500 2725300 1117700 1607600 0 0 0 795210 219990 575220 39801 2909 41792 211038;211039;211040;211041;211042;211043 214496;214497;214498;214499 214497 4 YTQLQYIGEGAYGMVSSAYDHVR EVEMVKGQPFDVGPRYTQLQYIGEGAYGMV EGAYGMVSSAYDHVRKTRVAIKKISPFEHQ R Y T V R K 2 1 0 1 0 2 1 3 1 1 1 0 1 0 0 2 1 0 4 2 0 0 23 0 2607.2064 P27361;E9PJF0;E9PQW4;E9PBK7 P27361 42 64 MAPK3 Mitogen-activated protein kinase 3;Mitogen-activated protein kinase yes no 3 0.0001068 45.784 By MS/MS By MS/MS 1 1 1.0784 1.0355 17.226 2 Median NaN NaN NaN 0 0 Median 1.0638 0.91673 NaN 1 1 Median 1.0933 1.1696 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4126500 1658000 2468600 0 0 0 2669700 999530 1670200 1456800 658440 798400 0 0 0 0 0 0 0 0 0 39802 2153 41793 211044;211045 214500;214501 214501 2 YTQQIIQGIQQLVK ILQQDFCHAIKVGVKYTQQIIQGIQQLVKE KYTQQIIQGIQQLVKETGVTKRTPQKLFTP K Y T V K E 0 0 0 0 0 5 0 1 0 3 1 1 0 0 0 0 1 0 1 1 0 0 14 0 1658.9356 Q8TCS8 Q8TCS8 251 264 PNPT1 Polyribonucleotide nucleotidyltransferase 1, mitochondrial yes yes 2 2.8419E-05 97.456 By MS/MS 1 1.6656 1.4554 NaN 1 Median NaN NaN NaN 0 0 Median 1.6656 1.4554 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9079700 3134400 5945200 0 0 0 9079700 3134400 5945200 0 0 0 0 0 0 0 0 0 0 0 0 39803 3467 41794 211046 214502 214502 1 YTQVGPDHNR LNQYFQKEKIQGEYKYTQVGPDHNRSFIAE QGEYKYTQVGPDHNRSFIAEMTIYIKQLGR K Y T N R S 0 1 1 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 10 0 1185.5527 Q08211 Q08211 200 209 DHX9 ATP-dependent RNA helicase A yes yes 2 0.047759 28.727 By MS/MS By matching By matching By matching 1 1 2 1 1.0316 1.0801 15.001 5 Median NaN NaN NaN 0 0 Median 1.2578 1.0801 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2356 1.0908 NaN 1 0 Median 0.90996 0.93953 21.169 2 0 Median 0.95928 0.8483 NaN 1 0 Median 3192100 1467700 1724400 0 0 0 1873500 847800 1025700 0 0 0 192010 76914 115100 975780 470800 504980 150770 72209 78561 39804 2736 41795 211047;211048;211049;211050;211051 214503 214503 1 YTRPGLPTFSQEVLHK RKVLQDLVPDDRKLKYTRPGLPTFSQEVLH TRPGLPTFSQEVLHKWKTDIKKYHRIQCPN K Y T H K W 0 1 0 0 0 1 1 1 1 0 2 1 0 1 2 1 2 0 1 1 0 0 16 1 1871.9894 G3XAG1;Q96ME7 G3XAG1 379 394 ZNF512 Zinc finger protein 512 yes no 3 4.4428E-05 60.918 By MS/MS 1 1.3401 1.3671 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.3401 1.3671 NaN 1 0 Median NaN NaN NaN 0 0 Median 19408000 7303300 12105000 0 0 0 0 0 0 0 0 0 0 0 0 19408000 7303300 12105000 0 0 0 39805 1124 41796 211052 214504;214505 214504 2 YTRPPNTSLFIR ______________________________ MSRYTRPPNTSLFIRNVADATRPEDLRREF R Y T I R N 0 2 1 0 0 0 0 0 0 1 1 0 0 1 2 1 2 0 1 0 0 0 12 1 1463.7885 Q8WXF0;E5RFT0;E5RJS0 Q8WXF0 4 15 SRSF12 Serine/arginine-rich splicing factor 12 yes no 2;3 0.00027281 130.01 By MS/MS By matching 2 1 0.47473 0.48313 9.0659 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.43489 0.46418 12.398 2 0 Median 0.54931 0.48313 NaN 1 0 Median 25815000 17003000 8811600 0 0 0 0 0 0 0 0 0 0 0 0 24677000 16342000 8335100 1137100 660610 476460 39806 3519 41797 211053;211054;211055 214506;214507;214508;214509 214506 4 YTSLMLR ESGQLISCSMDDTVRYTSLMLRDYSGQGVV CSMDDTVRYTSLMLRDYSGQGVVKLDVQPK R Y T L R D 0 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 1 0 1 0 0 0 7 0 882.46332 O75083 O75083 390 396 WDR1 WD repeat-containing protein 1 yes yes 2 0.0066845 92.191 By MS/MS By MS/MS By matching By matching 1 2 1 1 1.2662 1.1129 9.3158 5 Median 1.0785 1.0213 NaN 1 0 Median 1.2667 1.104 1.1404 2 0 Median 1.2397 1.2906 NaN 1 0 Median 1.4539 1.2247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 33545000 16209000 17335000 15843000 8156200 7687100 13462000 6061800 7400100 3684300 1792500 1891800 555200 198810 356390 0 0 0 0 0 0 39807 1643 41798 211056;211057;211058;211059;211060 214510;214511;214512;214513 214511 4 YTSLNHLAQAAR VKVAAAGAFAQTLRRYTSLNHLAQAARAVL LRRYTSLNHLAQAARAVLQNTAQINQMLSD R Y T A R A 3 1 1 0 0 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 12 0 1343.6946 P22670;P48378 P22670 751 762 RFX1;RFX2 MHC class II regulatory factor RFX1;DNA-binding protein RFX2 no no 3 0.00017946 62.408 By MS/MS By MS/MS By matching 2 2 1 0.9509 0.85281 67.688 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6188 1.8415 96.378 2 1 Median 0.91329 0.78134 12.376 2 0 Median NaN NaN NaN 0 0 Median 0.9509 0.77402 NaN 1 0 Median 25008000 11236000 13772000 0 0 0 0 0 0 17518000 7305300 10213000 6246700 3303400 2943300 0 0 0 1243500 627140 616410 39808 2104 41799 211061;211062;211063;211064;211065 214514;214515;214516 214515 3 YTSQIVGR LVSLILLGKVQQLPKYTSQIVGRFIKPLSN KVQQLPKYTSQIVGRFIKPLSNAYHELAQV K Y T G R F 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 0 8 0 922.48723 Q9UNS2;H7C3P9;C9JLV5;K7ES36 Q9UNS2 244 251 COPS3 COP9 signalosome complex subunit 3 yes no 2 0.0077442 65.777 By MS/MS 1 1.2676 1.0997 NaN 1 Median NaN NaN NaN 0 0 Median 1.2676 1.0997 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4270100 1836800 2433300 0 0 0 4270100 1836800 2433300 0 0 0 0 0 0 0 0 0 0 0 0 39809 4350 41800 211066 214517;214518 214518 2 YTTLIAK NEEDRKVGKLFEDTKYTTLIAKLKSDGIPM GKLFEDTKYTTLIAKLKSDGIPMYKRNVMI K Y T A K L 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 2 0 1 0 0 0 7 0 808.46945 Q9UGI8 Q9UGI8 72 78 TES Testin yes yes 2 0.031276 49.358 By MS/MS 1 1.1264 0.96723 NaN 1 Median NaN NaN NaN 0 0 Median 1.1264 0.96723 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2153300 1043000 1110300 0 0 0 2153300 1043000 1110300 0 0 0 0 0 0 0 0 0 0 0 0 39810 4263 41801 211067 214519;214520 214519 2 YTTPEDATPEPGEDPR AGKSKIEDYFPEFARYTTPEDATPEPGEDP TTPEDATPEPGEDPRVTRAKYFIRDEFLRI R Y T P R V 1 1 0 2 0 0 3 1 0 0 0 0 0 0 4 0 3 0 1 0 0 0 16 0 1773.7693 Q5JWF2;P63092;A0A590UJ58;B0AZR9;A0A590UJF0;A0A590UJB0;A0A590UJY2;A0A0A0MR13 Q5JWF2 961 976 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short yes no 2 0.00013249 56.225 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 0.59954 0.57811 13.442 4 Median 0.47566 0.47141 NaN 1 0 Median 0.74681 0.6491 NaN 1 0 Median 0.51777 0.56473 NaN 1 0 Median 0.69422 0.59182 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 28400000 16996000 11405000 5467700 3537600 1930100 5065700 2868900 2196900 12313000 7199800 5112700 5554200 3389300 2164900 0 0 0 0 0 0 39811 2616 41802 211068;211069;211070;211071 214521;214522;214523;214524;214525;214526;214527;214528;214529 214525 9 YTTPSGEVR VGELNDKMKGFYRSKYTTPSGEVRYAAVTQ GFYRSKYTTPSGEVRYAAVTQFEATDARRA K Y T V R Y 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 2 0 1 1 0 0 9 0 1008.4876 E9PLK3;P55786;A6NEC2;E9PP11 E9PLK3 160 168 NPEPPS;NPEPPSL1 Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein yes no 2 0.0027536 69.825 By MS/MS By matching 1 1 1.139 1.0613 13.97 2 Median NaN NaN NaN 0 0 Median 1.1127 0.96146 NaN 1 0 Median 1.1659 1.1715 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10626000 4756100 5870300 0 0 0 7129500 3166300 3963200 3496900 1589700 1907100 0 0 0 0 0 0 0 0 0 39812 960 41803 211072;211073 214530 214530 1 YTVAPTSLVVSPGQQTLLGLK LFSLNALFDFWRYFKYTVAPTSLVVSPGQQ SLVVSPGQQTLLGLKTAVVQTTPPHDLAAT K Y T L K T 1 0 0 0 0 2 0 2 0 0 4 1 0 0 2 2 3 0 1 3 0 0 21 0 2171.2202 Q96SK2;C9JYX1 Q96SK2 88 108 TMEM209 Transmembrane protein 209 yes no 3 0.015068 16.93 By MS/MS 1 0.6932 0.71377 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.6932 0.71377 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1980400 1161600 818760 0 0 0 0 0 0 1980400 1161600 818760 0 0 0 0 0 0 0 0 0 39813 3735 41804 211074 214531;214532 214531 2 YTVPGYR SAILSQADARQVVLKYTVPGYRNSLEFFTV DARQVVLKYTVPGYRNSLEFFTVLAQRRGM K Y T Y R N 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 7 0 854.42865 Q9BVP2 Q9BVP2 353 359 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.027697 51.572 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.3375 1.2507 18.973 4 Median 1.3522 1.3717 NaN 1 0 Median 1.3228 1.1403 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1149 1.1205 NaN 1 0 Median 1.9501 1.6811 NaN 1 0 Median 12328000 5963500 6364200 1478100 673500 804650 1357000 527640 829400 0 0 0 0 0 0 6346600 3304400 3042200 3146000 1458000 1688000 39814 3858 41805 211075;211076;211077;211078 214533;214534;214535 214534 3 YTVQDESHSEWVSCVR RDKTIKLWNTLGVCKYTVQDESHSEWVSCV TVQDESHSEWVSCVRFSPNSSNPIIVSCGW K Y T V R F 0 1 0 1 1 1 2 0 1 0 0 0 0 0 0 3 1 1 1 3 0 0 16 0 1980.8636 P63244;J3KPE3;D6RHH4;H0Y8W2;H0YAF8;D6R9L0;D6R9Z1;H0YAM7;D6RFX4;D6RFZ9;D6RBD0 P63244 140 155 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes no 3 4.2701E-07 89.624 By matching By MS/MS By MS/MS 1 2 1 1.1649 1.037 11.647 4 Median 1.1646 1.1098 NaN 1 0 Median 1.1083 0.93425 5.1461 2 0 Median 1.1783 1.1566 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34903000 16281000 18622000 4043900 1834200 2209700 22940000 10653000 12287000 7918400 3793600 4124800 0 0 0 0 0 0 0 0 0 39815 2624 41806 211079;211080;211081;211082 214536;214537;214538;214539 214539 4 YTYEHDPITK QVRQQLKKLEELEQKYTYEHDPITKNKQVL ELEQKYTYEHDPITKNKQVLWDRTFSLFQQ K Y T T K N 0 0 0 1 0 0 1 0 1 1 0 1 0 0 1 0 2 0 2 0 0 0 10 0 1265.5928 P42224;J3KPM9 P42224 287 296 STAT1 Signal transducer and activator of transcription 1-alpha/beta;Signal transducer and activator of transcription yes no 2;3 0.00041294 76.1 By matching By MS/MS 2 2 0.97948 0.964 13.424 4 Median 0.97948 0.9727 8.0535 2 0 Median 0.99368 0.88136 19.456 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6984000 3541900 3442100 3463000 1699300 1763700 3521000 1842600 1678400 0 0 0 0 0 0 0 0 0 0 0 0 39816 2308 41807 211083;211084;211085;211086 214540;214541;214542 214542 3 YTYMEEMLGNVAGAR RAITTLPRVNQFWYKYTYMEEMLGNVAGAR YTYMEEMLGNVAGARQVFERWMEWQPEEQA K Y T A R Q 2 1 1 0 0 0 2 2 0 0 1 0 2 0 0 0 1 0 2 1 0 0 15 0 1703.7647 Q5JY65;Q9BZJ0 Q5JY65 304 318 CRNKL1 Crooked neck-like protein 1 yes no 2 0.00028434 69.01 By MS/MS By MS/MS By matching By matching By matching 1 1 1 2 1 1.0358 0.99142 18.977 6 Median 1.1639 1.1591 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.88939 0.93452 NaN 1 0 Median 1.0795 0.88721 NaN 1 0 Median 0.82218 0.87142 26.605 2 0 Median 1.5332 1.2011 NaN 1 0 Median 30488000 15260000 15228000 840920 347820 493100 0 0 0 4580100 2456900 2123200 81740 38440 43300 22652000 11411000 11240000 2333200 1005500 1327700 39817 3061 41808 211087;211088;211089;211090;211091;211092 214543;214544;214545 214545 2 YVAADTLYSQIKEDVK LLELSPGEGFSIQEKYVAADTLYSQIKEDV VAADTLYSQIKEDVKKRAVALDEAISQSTQ K Y V V K K 2 0 0 2 0 1 1 0 0 1 1 2 0 0 0 1 1 0 2 2 0 0 16 1 1841.9411 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A0U1RQJ2 E9PHM6 3933 3948 DST Dystonin yes no 3 0.029783 16.88 By MS/MS By matching 1 1 0.87823 0.97653 7.7663 2 Median 0.94824 1.0317 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.81339 0.92435 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8702300 4830700 3871700 5358800 2764300 2594500 0 0 0 3343500 2066400 1277200 0 0 0 0 0 0 0 0 0 39818 934 41809 211093;211094 214546 214546 1 YVAEIEK RDQSLKILNPEEIEKYVAEIEKEKEENEKK LNPEEIEKYVAEIEKEKEENEKKKQKKAS_ K Y V E K E 1 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 850.44363 O14818;H0Y586 O14818 228 234 PSMA7 Proteasome subunit alpha type-7 yes no 2 0.053242 38.792 By MS/MS 1 1.045 0.99032 NaN 1 Median 1.045 0.99032 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2476800 1234900 1241900 2476800 1234900 1241900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39819 1497 41810 211095 214547 214547 1 YVAEIEKEKEENEK RDQSLKILNPEEIEKYVAEIEKEKEENEKK KYVAEIEKEKEENEKKKQKKAS________ K Y V E K K 1 0 1 0 0 0 6 0 0 1 0 3 0 0 0 0 0 0 1 1 0 0 14 2 1736.8469 O14818;H0Y586 O14818 228 241 PSMA7 Proteasome subunit alpha type-7 yes no 2;3;4 2.0257E-06 134.21 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 3 1 2 1 1.0248 1.0028 13.121 9 Median 0.93997 0.99268 0.78433 2 0 Median 1.0248 1.0028 6.1343 3 0 Plateau 1.1119 1.2546 NaN 1 0 Median 1.3697 1.2594 0.65427 2 0 Median NaN NaN NaN 0 0 Median 1.102 1.0319 NaN 1 0 Median 66782000 31208000 35573000 34035000 15938000 18097000 27493000 12861000 14632000 3582300 1656300 1926000 1423800 636930 786910 0 0 0 247080 115640 131440 39820 1497 41811 211096;211097;211098;211099;211100;211101;211102;211103;211104 214548;214549;214550;214551;214552;214553;214554;214555;214556;214557;214558;214559 214549 12 YVALTSLLK NILGRFLLNNDKNIRYVALTSLLKTVQTDH NDKNIRYVALTSLLKTVQTDHNAVQRHRST R Y V L K T 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 1 1 0 0 9 0 1006.6063 O43747 O43747 326 334 AP1G1 AP-1 complex subunit gamma-1 yes yes 2 0.012368 46.426 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.2826 1.1766 4.9011 4 Median 1.2647 1.1921 NaN 1 0 Median 1.329 1.1613 NaN 1 0 Median 1.2102 1.2859 NaN 1 0 Median 1.3009 1.1573 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13135000 5850400 7284100 4839200 2204100 2635000 6123500 2566900 3556600 1992200 992940 999310 179560 86396 93168 0 0 0 0 0 0 39821 1587 41812 211105;211106;211107;211108 214560;214561;214562 214560 3 YVALVQEK VAASLATTLTKIALRYVALVQEKKKQNSFV LTKIALRYVALVQEKKKQNSFVAEAMLLMA R Y V E K K 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 948.52803 P53618 P53618 568 575 COPB1 Coatomer subunit beta yes yes 2 0.0038087 85.212 By matching By MS/MS By matching 1 2 1 1.2553 1.1681 15.592 4 Median 1.3068 1.29 NaN 1 0 Median 1.1773 1.0199 5.1474 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.6365 1.3626 NaN 1 0 Median 12685000 6287800 6397000 3417400 1857400 1560000 8391400 4072800 4318600 0 0 0 0 0 0 0 0 0 875930 357520 518410 39822 2472 41813 211109;211110;211111;211112 214563;214564;214565 214563 3 YVANLFPYK PLNPIKQDVKKGKLRYVANLFPYKGYIWNY KKGKLRYVANLFPYKGYIWNYGAIPQTWED R Y V Y K G 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 2 1 0 0 9 0 1113.5859 Q15181;Q5SQT6 Q15181 80 88 PPA1 Inorganic pyrophosphatase yes no 2 0.0028856 68.915 By MS/MS By MS/MS By matching By matching 5 3 1 1 0.99037 0.84881 24.93 10 Median 0.98985 0.89495 15.656 5 0 Median 1.0195 0.8533 41.242 3 0 Median 0.70013 0.65972 NaN 1 0 Median 0.99088 0.84434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 214750000 105110000 109640000 168180000 82106000 86075000 44715000 21895000 22820000 903010 653240 249770 947990 454690 493300 0 0 0 0 0 0 39823 2934 41814 211113;211114;211115;211116;211117;211118;211119;211120;211121;211122 214566;214567;214568;214569;214570;214571;214572;214573;214574;214575;214576;214577;214578;214579;214580;214581;214582 214570 17 YVAPPSLR HSLACLLTQYRVSLRYVAPPSLRMPPTVRA QYRVSLRYVAPPSLRMPPTVRAFVASRGTK R Y V L R M 1 1 0 0 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 8 0 901.50215 F8VPD4;P27708;H7C2E4 F8VPD4 2040 2047 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes no 2 0.0034678 94.407 By MS/MS By MS/MS 1 1 0.89151 0.81042 8.1217 2 Median 0.79002 0.76519 NaN 1 0 Median 1.006 0.85833 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11851000 6502000 5348500 3876500 2352900 1523600 7974100 4149200 3824900 0 0 0 0 0 0 0 0 0 0 0 0 39824 1057 41815 211123;211124 214583;214584;214585;214586 214584 4 YVAQAGLEPLASGDPSASASHAAGITGSR QESKDGDPRKETGSRYVAQAGLEPLASGDP PSASASHAAGITGSRHRTRLFFPSSSGSAS R Y V S R H 7 1 0 1 0 1 1 4 1 1 2 0 0 0 2 5 1 0 1 1 0 0 29 0 2740.3416 O94966;A0A590UK03;A0A0A0MR08 O94966 47 75 USP19 Ubiquitin carboxyl-terminal hydrolase 19 yes no 3 1.0772E-20 65.155 By MS/MS 1 0.82284 0.77434 NaN 1 Median 0.82284 0.77434 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8586900 4666800 3920200 8586900 4666800 3920200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39825 1740 41816 211125 214587;214588 214588 2 YVAQAHDKPR DPKDVREWQHEEFYRYVAQAHDKPRYTLHY EEFYRYVAQAHDKPRYTLHYKTDAPLNIRS R Y V P R Y 2 1 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 1 0 0 10 1 1183.6098 I3L0K7;I3L239;Q12931 Q12931 317 326 TRAP1 Heat shock protein 75 kDa, mitochondrial no no 3 0.035766 32.008 By MS/MS 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 254330 0 254330 254330 0 254330 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39826 2771;1269 41817 211126 214589 214589 1 YVASAVFGVIGSQK ______________________________ RYVASAVFGVIGSQKGNIVFVTLRGEKGRY R Y V Q K G 2 0 0 0 0 1 0 2 0 1 0 1 0 1 0 2 0 0 1 3 0 0 14 0 1424.7664 Q9UNX4;Q6PDA5 Q9UNX4 10 23 WDR3 WD repeat-containing protein 3 yes no 2 0.003965 56.359 By MS/MS 2 1.379 1.4985 5.6818 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.379 1.4985 5.6818 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5427500 2421600 3005900 0 0 0 0 0 0 5427500 2421600 3005900 0 0 0 0 0 0 0 0 0 39827 4351 41818 211127;211128 214590;214591 214591 2 YVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD R Y V A K D 4 0 1 0 0 0 0 2 0 0 3 1 0 0 1 4 0 0 2 1 0 0 19 0 1867.968 P05387 P05387 3 21 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3 2.1358E-09 87.18 By MS/MS By MS/MS By MS/MS By MS/MS By matching 3 2 2 1 3 1.0215 0.96574 10.607 11 Median 0.96711 0.87782 5.627 3 0 Median 0.97229 0.797 0.027952 2 1 Median 1.0252 0.98029 0.96289 2 0 Median NaN NaN NaN 0 0 Median 1.0593 1.1415 NaN 1 0 Median 1.2091 0.98813 1.8035 3 0 Median 252080000 130540000 121540000 52032000 26037000 25996000 160360000 85466000 74895000 28762000 13783000 14979000 0 0 0 5672800 2788700 2884100 5251900 2462700 2789200 39828 1864 41819 211129;211130;211131;211132;211133;211134;211135;211136;211137;211138;211139 214592;214593;214594;214595;214596;214597;214598;214599;214600;214601;214602;214603;214604;214605;214606;214607;214608 214596 17 YVATLGVEVHPLVFHTNR TTFVKRHLTGEFEKKYVATLGVEVHPLVFH TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K Y V N R G 1 1 1 0 0 0 1 1 2 0 2 0 0 1 1 0 2 0 1 4 0 0 18 0 2051.0952 B5MDF5;P62826;J3KQE5;F5H018;H0YFC6 B5MDF5 39 56 RAN GTP-binding nuclear protein Ran yes no 2;3;4 5.5441E-32 196.11 By MS/MS By MS/MS By MS/MS By matching 6 3 2 2 1.0457 0.93455 21.594 13 Median 1.0008 0.95263 22.335 6 2 Median 1.1048 0.93455 24.187 3 0 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.94534 0.96558 3.8557 2 0 Median 1.4218 1.1011 24.831 2 0 Median 255780000 122250000 133530000 211660000 102390000 109260000 25859000 11969000 13890000 0 0 0 0 0 0 2802500 1768900 1033500 15464000 6116700 9347700 39829 623 41820 211140;211141;211142;211143;211144;211145;211146;211147;211148;211149;211150;211151;211152 214609;214610;214611;214612;214613;214614;214615;214616;214617;214618;214619;214620;214621;214622 214618 14 YVAVELK ENDWVRLPSKCEVCKYVAVELKSAFEETGK PSKCEVCKYVAVELKSAFEETGKTKEVIGT K Y V L K S 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 7 0 820.46945 Q9BT09;A0A0C4DFY8 Q9BT09 54 60 CNPY3 Protein canopy homolog 3 yes no 2 0.027519 51.787 By MS/MS 1 1.1549 0.96901 NaN 1 Median NaN NaN NaN 0 0 Median 1.1549 0.96901 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5221400 2097000 3124400 0 0 0 5221400 2097000 3124400 0 0 0 0 0 0 0 0 0 0 0 0 39830 3820 41821 211153 214623 214623 1 YVDIAIPCNNK NLPTIALCNTDSPLRYVDIAIPCNNKGAHS SPLRYVDIAIPCNNKGAHSVGLMWWMLARE R Y V N K G 1 0 2 1 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1305.6387 C9J9K3;A0A0C4DG17;P08865 C9J9K3 156 166 RPSA 40S ribosomal protein SA yes no 2 0.00020233 96.711 By MS/MS By MS/MS By MS/MS 1 3 1 0.97213 0.88646 30.12 5 Median 0.9526 0.88646 NaN 1 0 Median 1.2697 1.0706 38.004 3 0 Plateau 1.1305 1.0831 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 30070000 14193000 15877000 9459000 4610000 4849100 15755000 7424000 8331000 4856400 2159300 2697100 0 0 0 0 0 0 0 0 0 39831 232 41822 211154;211155;211156;211157;211158 214624;214625;214626;214627;214628;214629 214629 6 YVDIGVLASDLQR KQRVIQYLTSNKCGKYVDIGVLASDLQRVY GKYVDIGVLASDLQRVYSIDYGRRKRNAFR K Y V Q R V 1 1 0 2 0 1 0 1 0 1 2 0 0 0 0 1 0 0 1 2 0 0 13 0 1447.7671 O15381;F8WF01;E9PGD8;E7EWK7;E9PH71 O15381 29 41 NVL Nuclear valosin-containing protein-like yes no 2 0.00043463 84.17 By MS/MS 1 7.82 7.9277 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7.82 7.9277 NaN 1 1 Median NaN NaN NaN 0 0 Median 15280000 1912600 13367000 0 0 0 0 0 0 0 0 0 0 0 0 15280000 1912600 13367000 0 0 0 39832 1542 41823 211159 214630 214630 1 YVDMSVK DPSILGGMIVRIGEKYVDMSVKTKIQKLGR MIVRIGEKYVDMSVKTKIQKLGRAMREIV_ K Y V V K T 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 2 0 0 7 0 840.40514 P48047 P48047 193 199 ATP5O ATP synthase subunit O, mitochondrial yes yes 2 0.020048 60.799 By MS/MS By matching 2 2 1.3927 1.2501 25.387 4 Median 1.0846 0.98765 7.8906 2 0 Median 1.7679 1.5212 2.3239 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9173000 3816300 5356700 6925400 2978800 3946700 2247600 837550 1410100 0 0 0 0 0 0 0 0 0 0 0 0 39833 2358 41824 211160;211161;211162;211163 214631;214632 214632 2 YVDQVLQLVYK GQTRISVGKANKRLRYVDQVLQLVYKDGSP KRLRYVDQVLQLVYKDGSPCPSKSGLSYKS R Y V Y K D 0 0 0 1 0 2 0 0 0 0 2 1 0 0 0 0 0 0 2 3 0 0 11 0 1366.7497 P11717 P11717 1583 1593 IGF2R Cation-independent mannose-6-phosphate receptor yes yes 2 0.00014865 88.819 By MS/MS By MS/MS By matching By matching 2 2 1 2 1.3616 1.2898 11.799 7 Median 1.2572 1.23 9.6948 2 0 Median 1.4339 1.2718 1.9829 2 0 Median 1.238 1.3732 NaN 1 0 Median 1.565 1.4346 21.352 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32301000 13310000 18991000 10877000 4627100 6249800 20093000 8231600 11861000 1082100 356680 725450 249390 94314 155070 0 0 0 0 0 0 39834 1969 41825 211164;211165;211166;211167;211168;211169;211170 214633;214634;214635;214636;214637;214638 214633 6 YVDSEGHLYTVPIR ______________________________ KYVDSEGHLYTVPIREQGNIYKPNNKAMAD K Y V I R E 0 1 0 1 0 0 1 1 1 1 1 0 0 0 1 1 1 0 2 2 0 0 14 0 1647.8257 Q03135 Q03135 6 19 CAV1 Caveolin-1 yes yes 2;3 6.2228E-06 124.1 By MS/MS By MS/MS By matching By MS/MS 3 2 1 1 0.80915 0.79815 26.693 7 Median 0.98572 0.9665 15.075 3 0 Median 0.73316 0.60998 11.699 2 0 Median 0.90154 1.0812 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.6004 0.63527 NaN 1 0 Median NaN NaN NaN 0 0 Median 33170000 17143000 16027000 18366000 8734000 9632000 7708700 4495700 3213000 3488300 1737100 1751200 0 0 0 3606900 2176000 1430900 0 0 0 39835 2707 41826 211171;211172;211173;211174;211175;211176;211177 214639;214640;214641;214642;214643 214640 4 YVDTPFGKPSDALILGK TGLDDPEILEGRTEKYVDTPFGKPSDALIL DTPFGKPSDALILGKIKNVDCVLLARHGRQ K Y V G K I 1 0 0 2 0 0 0 2 0 1 2 2 0 1 2 1 1 0 1 1 0 0 17 1 1819.972 B4DUC8;Q13126;J3QSB7;F2Z2F3 B4DUC8 50 66 MTAP S-methyl-5-thioadenosine phosphorylase;Purine nucleoside phosphorylase yes no 3 0.0082209 24.481 By MS/MS By matching 1 2 0.93825 0.8604 19.163 3 Median 0.69106 0.66943 NaN 1 0 Median 1.0079 0.91605 8.8645 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 29703000 19324000 10379000 24954000 17078000 7875900 4749500 2246200 2503300 0 0 0 0 0 0 0 0 0 0 0 0 39836 604 41827 211178;211179;211180 214644 214644 1 YVDVLNPSGTQR PVNMYSRRAAGTRARYVDVLNPSGTQRSEP RARYVDVLNPSGTQRSEPALAPADFVAPLA R Y V Q R S 0 1 1 1 0 1 0 1 0 0 1 0 0 0 1 1 1 0 1 2 0 0 12 0 1347.6783 O15027;A0A3F2YNX0;A0A3F2YNZ0;F1T0I1;X6RGP5;A0A0C4DH09;Q8N9G1 O15027 2193 2204 SEC16A Protein transport protein Sec16A yes no 2 0.012222 55.567 By MS/MS 1 0.60413 0.50679 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.60413 0.50679 NaN 1 1 Median 774390 533340 241050 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 774390 533340 241050 39837 1513 41828 211181 214645 214645 1 YVECSALTQK PETAEKLARDLKAVKYVECSALTQKGLKNV LKAVKYVECSALTQKGLKNVFDEAILAALE K Y V Q K G 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 10 0 1197.57 P60953 P60953 154 163 CDC42 Cell division control protein 42 homolog yes yes 2 0.0013541 84.615 By MS/MS 2 1.2055 1.0327 6.5628 2 Median NaN NaN NaN 0 0 Median 1.2055 1.0327 6.5628 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5388500 2481700 2906700 0 0 0 5388500 2481700 2906700 0 0 0 0 0 0 0 0 0 0 0 0 39838 2532 41829 211182;211183 214646;214647 214647 2 YVEDEMAR IAKLDRTVAEKAVKKYVEDEMARLPDRLSV AEKAVKKYVEDEMARLPDRLSVTWPEGDEL K Y V A R L 1 1 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 8 0 1011.4331 A6NHR9;J3KTL8;J3QSH1 A6NHR9 681 688 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes no 2 0.0054254 75.854 By MS/MS 1 0.98415 1.0932 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.98415 1.0932 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2943400 1331300 1612100 0 0 0 0 0 0 2943400 1331300 1612100 0 0 0 0 0 0 0 0 0 39839 518 41830 211184 214648;214649 214648 2 YVEEHGAGSSGVAGAPEER SRKTATFKSRAPKKKYVEEHGAGSSGVAGA HGAGSSGVAGAPEERVRTPEEASGLGVPPR K Y V E R V 3 1 0 0 0 0 4 4 1 0 0 0 0 0 1 2 0 0 1 2 0 0 19 0 1900.8551 I3L2J0;I3L2I4 I3L2J0 122 140 CIC yes no 3 0.059466 8.1518 By MS/MS By matching 1 2 0.84918 0.81711 23.356 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.84918 0.94968 NaN 1 0 Median 0.81769 0.70054 21.767 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1548400 940120 608240 0 0 0 0 0 0 689910 452620 237290 858450 487490 370960 0 0 0 0 0 0 39840 1283 41831 211185;211186;211187 214650 214650 1 YVEFNLLYDR FTPQEKLWQQLRRGRYVEFNLLYDRGTKFG LRRGRYVEFNLLYDRGTKFGLFTPGSRIES R Y V D R G 0 1 1 1 0 0 1 0 0 0 2 0 0 1 0 0 0 0 2 1 0 0 10 0 1330.6558 P36551;H0YA22 P36551 392 401 CPOX Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial yes no 2 0.00042849 95.099 By MS/MS By MS/MS By MS/MS 1 1 1 1.0973 1.1541 16.584 3 Median 1.0164 1.0088 NaN 1 0 Median 1.6135 1.403 NaN 1 0 Median 1.0973 1.1541 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11057000 5024500 6032600 4774700 2224600 2550100 5241500 2309400 2932100 1040900 490570 550330 0 0 0 0 0 0 0 0 0 39841 2259 41832 211188;211189;211190 214651;214652;214653;214654;214655 214655 5 YVELFLNSTAGASGGAYEHR AVAAMSKDKANMQHRYVELFLNSTAGASGG LNSTAGASGGAYEHRYVELFLNSTAGASGG R Y V H R Y 3 1 1 0 0 0 2 3 1 0 2 0 0 1 0 2 1 0 2 1 0 0 20 0 2141.0178 P31943;G8JLB6;H0YB39 P31943 356 375 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes no 2;3 1.4145E-38 196.58 By MS/MS By MS/MS By MS/MS By MS/MS By matching 2 4 4 10 1 1.1714 1.0713 13.589 19 Median 1.056 1.0051 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.05 1.0397 19.393 4 0 Median 1.3507 1.1677 16.625 4 0 Median 1.1072 1.0967 11.059 9 4 Median 1.2655 1.0223 NaN 1 0 Median 425660000 201850000 223820000 13926000 8436600 5489600 0 0 0 200460000 94582000 105880000 22995000 9969700 13025000 185170000 87614000 97556000 3109800 1245300 1864500 39842 1136 41833 211191;211192;211193;211194;211195;211196;211197;211198;211199;211200;211201;211202;211203;211204;211205;211206;211207;211208;211209;211210;211211 214656;214657;214658;214659;214660;214661;214662;214663;214664;214665;214666;214667;214668;214669;214670;214671;214672;214673;214674;214675;214676;214677;214678;214679;214680;214681;214682;214683;214684;214685;214686;214687;214688;214689;214690;214691;214692;214693;214694;214695;214696;214697 214667 42 YVENFGLIDGR SLDDSAKKVLLEKYKYVENFGLIDGRLTIC EKYKYVENFGLIDGRLTICTISCFFAIVAL K Y V G R L 0 1 1 1 0 0 1 2 0 1 1 0 0 1 0 0 0 0 1 1 0 0 11 0 1281.6354 A0A087WUC6;E9PI68;Q15005;H0YE04 A0A087WUC6 74 84 SPCS2 Signal peptidase complex subunit 2 yes no 2 0.00015911 114.5 By MS/MS By MS/MS 1 1 1.363 1.3022 1.1564 2 Median 1.3595 1.2916 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3665 1.3129 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 36293000 15505000 20788000 23640000 9737700 13903000 0 0 0 12653000 5767400 6885300 0 0 0 0 0 0 0 0 0 39843 29 41834 211212;211213 214698;214699;214700 214698 3 YVENNKNADNDWFR LWVQRLKEEYQSLIRYVENNKNADNDWFRL RYVENNKNADNDWFRLESNKEGTRWFGKCW R Y V F R L 1 1 4 2 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 14 1 1783.7914 Q9Y3C8 Q9Y3C8 42 55 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 yes yes 3 0.00069694 44.457 By MS/MS By matching 1 1 0.8936 0.8352 4.3966 2 Median 0.87 0.86157 NaN 1 0 Median 0.91783 0.80963 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7093500 3708900 3384600 6236300 3257900 2978400 857180 450970 406210 0 0 0 0 0 0 0 0 0 0 0 0 39844 4420 41835 211214;211215 214701 214701 1 YVEQYVGTEGASSSPTEGFLLKPVFLQR EAQTEDPVEVQHLARYVEQYVGTEGASSSP SPTEGFLLKPVFLQRNLKKFRRRWQSEQAR R Y V Q R N 1 1 0 0 0 2 3 3 0 0 3 1 0 2 2 3 2 0 2 3 0 0 28 1 3101.571 M0QYC5;O75182 M0QYC5 548 575 SIN3B Paired amphipathic helix protein Sin3b yes no 3 3.1771E-05 31.819 By MS/MS 1 0.57857 0.65711 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.57857 0.65711 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2986100 1759300 1226700 0 0 0 0 0 0 2986100 1759300 1226700 0 0 0 0 0 0 0 0 0 39845 1416 41836 211216 214702;214703 214702 2 YVETLLTHMGVNPLEAEELIR AKQLRSDLSSFDMLRYVETLLTHMGVNPLE THMGVNPLEAEELIRDEDSPDFEFIVYDSW R Y V I R D 1 1 1 0 0 0 4 1 1 1 4 0 1 0 1 0 2 0 1 2 0 0 21 0 2426.2515 Q9NXX6 Q9NXX6 163 183 NSMCE4A Non-structural maintenance of chromosomes element 4 homolog A yes yes 3 0.0063966 22.902 By MS/MS 1 0.85658 0.8518 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.85658 0.8518 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1290300 721070 569180 0 0 0 0 0 0 1290300 721070 569180 0 0 0 0 0 0 0 0 0 39846 4170 41837 211217 214704;214705 214705 2 YVEVSPATER TFEALKRNRMLMIQRYVEVSPATERQWVAA LMIQRYVEVSPATERQWVAAGGHITFKQNM R Y V E R Q 1 1 0 0 0 0 2 0 0 0 0 0 0 0 1 1 1 0 1 2 0 0 10 0 1149.5666 Q9NTZ6 Q9NTZ6 371 380 RBM12 RNA-binding protein 12 yes yes 2 0.00058327 95.502 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.358 1.2902 43.772 4 Median 0.86026 0.84608 NaN 1 1 Median 1.0629 0.89694 NaN 1 1 Median 1.7351 1.856 NaN 1 1 Median 2.1818 1.8584 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 13572000 5104400 8467900 2344200 1132700 1211500 5112700 2204700 2907900 4292200 1336000 2956200 1823300 431010 1392300 0 0 0 0 0 0 39847 4111 41838 211218;211219;211220;211221 214706;214707;214708;214709 214708 4 YVEVYEINNEDVDALMK VQKALEKHRMYMGQRYVEVYEINNEDVDAL EVYEINNEDVDALMKSLQVKSSPVVNDGVV R Y V M K S 1 0 2 2 0 0 3 0 0 1 1 1 1 0 0 0 0 0 2 3 0 0 17 0 2042.9507 H0Y8R1;F5H5I6;H0YAK1;Q12849;H0YAM1 H0Y8R1 158 174 GRSF1 G-rich sequence factor 1 yes no 2 0.00022024 47.288 By MS/MS By matching 1 1 1.0435 0.97916 24.313 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1785 1.1628 NaN 1 0 Median 0.92394 0.8245 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5077600 2469600 2608100 0 0 0 0 0 0 4588800 2230700 2358100 488790 238820 249970 0 0 0 0 0 0 39848 1035 41839 211222;211223 214710;214711 214711 2 YVFSAYK PSCKNNYENYIDIVKYVFSAYKRESPLIVN ENYIDIVKYVFSAYKRESPLIVNTMGWVSD K Y V Y K R 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 2 1 0 0 7 0 876.43815 Q5SY16 Q5SY16 392 398 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.043995 43.124 By MS/MS 1 1.0535 1.1187 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0535 1.1187 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4544100 2267600 2276500 0 0 0 0 0 0 4544100 2267600 2276500 0 0 0 0 0 0 0 0 0 39849 3077 41840 211224 214712 214712 1 YVFTDISYSIPHR VLAEDKILEGTETTKYVFTDISYSIPHRER TKYVFTDISYSIPHRERFIVVREPSGTLRK K Y V H R E 0 1 0 1 0 0 0 0 1 2 0 0 0 1 1 2 1 0 2 1 0 0 13 0 1596.7936 G5E9W7;G5E9V5;P82650;H7C5F2;H7C5H3;H7C5L9 G5E9W7 115 127 MRPS22 28S ribosomal protein S22, mitochondrial yes no 2;3 1.4639E-05 95.573 By MS/MS By matching By matching By matching 2 4 1 1 1.2357 1.0786 37.591 8 Median 0.83564 0.8324 4.4899 2 0 Median 1.2357 1.0786 49.842 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2858 1.3468 NaN 1 0 Median 1.5816 1.3215 NaN 1 0 Median 24565000 13590000 10975000 21633000 12209000 9423800 1697800 829240 868590 0 0 0 0 0 0 768620 345810 422810 465670 205600 260070 39850 1130 41841 211225;211226;211227;211228;211229;211230;211231;211232 214713;214714;214715 214714 2 YVGESEANIR AREPKVVNGPEILNKYVGESEANIRKLFAD EILNKYVGESEANIRKLFADAEEEQRRLGA K Y V I R K 1 1 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 10 0 1136.5462 I3L0N3;P46459 I3L0N3 289 298 NSF Vesicle-fusing ATPase yes no 2 0.00040021 99.442 By MS/MS By MS/MS By matching 1 1 1 1.1994 1.1199 12.496 3 Median 1.1824 1.1199 NaN 1 0 Median 1.1994 1.0368 NaN 1 1 Median 1.2443 1.3239 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 22287000 9749200 12538000 7477000 3362700 4114300 12776000 5372000 7403800 2034200 1014500 1019700 0 0 0 0 0 0 0 0 0 39851 1272 41842 211233;211234;211235 214716;214717 214716 2 YVGESEANIRK AREPKVVNGPEILNKYVGESEANIRKLFAD ILNKYVGESEANIRKLFADAEEEQRRLGAN K Y V R K L 1 1 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 11 1 1264.6412 I3L0N3;P46459 I3L0N3 289 299 NSF Vesicle-fusing ATPase yes no 3 0.043738 15.539 By MS/MS 1 0.85105 0.86516 NaN 1 Median 0.85105 0.86516 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1091700 563540 528190 1091700 563540 528190 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39852 1272 41843 211236 214718 214718 1 YVGETQPTGQIK AREILKQIEYRNLFKYVGETQPTGQIKIKR LFKYVGETQPTGQIKIKREDYESLPKEVAS K Y V I K I 0 0 0 0 0 2 1 2 0 1 0 1 0 0 1 0 2 0 1 1 0 0 12 0 1319.6721 Q9Y3Z3;A0A2R8YCS7 Q9Y3Z3 456 467 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes no 2 4.0658E-06 147.95 By MS/MS By MS/MS 1 1 1.1845 1.0565 3.2922 2 Median 1.1383 1.0814 NaN 1 0 Median 1.2327 1.0322 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 19328000 8379700 10948000 7360800 3088600 4272300 11967000 5291200 6675800 0 0 0 0 0 0 0 0 0 0 0 0 39853 4436 41844 211237;211238 214719;214720;214721;214722 214721 4 YVGVSSDSVGGFR RLREERKKAKKNKDKYVGVSSDSVGGFRYS DKYVGVSSDSVGGFRYSERYDPEPKSKWDE K Y V F R Y 0 1 0 1 0 0 0 3 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1328.6361 Q14677 Q14677 159 171 CLINT1 Clathrin interactor 1 yes yes 2 0.0020258 67.334 By MS/MS 1 1.2206 1.0189 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2206 1.0189 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1824100 847220 976850 0 0 0 0 0 0 0 0 0 1824100 847220 976850 0 0 0 0 0 0 39854 2888 41845 211239 214723 214723 1 YVHLFPK GELIRMPKMGKTIHKYVHLFPKLELSVHLQ KMGKTIHKYVHLFPKLELSVHLQPITRSTL K Y V P K L 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 7 0 902.50142 O75643;A0A494C1A5 O75643 1177 1183 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes no 2 0.0098565 83.229 By matching By matching By MS/MS By MS/MS By MS/MS 1 1 1 1 1 0.92279 0.90728 12.366 5 Median 0.99607 0.98362 NaN 1 0 Median 0.92279 0.77533 NaN 1 0 Median 0.89769 0.98887 NaN 1 0 Median 1.0076 0.90728 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.89798 0.76891 NaN 1 1 Median 46916000 24957000 21959000 1830200 902130 928110 2318400 1211600 1106800 19885000 10720000 9165000 6291200 2952600 3338600 0 0 0 16592000 9171200 7420400 39855 1688 41846 211240;211241;211242;211243;211244 214724;214725;214726;214727;214728 214725 5 YVHPLTEEAIEEMER LSPNTAPHKYYIGFRYVHPLTEEAIEEMER YVHPLTEEAIEEMERDGLERAIAFTQYPQY R Y V E R D 1 1 0 0 0 0 5 0 1 1 1 0 1 0 1 0 1 0 1 1 0 0 15 0 1844.8615 P22830;K7ELX4;A0A499FJN5 P22830 165 179 FECH Ferrochelatase, mitochondrial yes no 2;3 8.7548E-05 68.044 By MS/MS By matching 3 1 0.70335 0.76647 11.486 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69697 0.76058 5.2342 3 0 Median 1.0871 0.9207 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 32737000 19590000 13147000 0 0 0 0 0 0 32560000 19507000 13053000 177610 83314 94294 0 0 0 0 0 0 39856 2106 41847;41848 211245;211246;211247;211248 214729;214730;214731 214730 865 3 YVHQLFSQHYR VIGELGVGKTSIIKRYVHQLFSQHYRATIG IIKRYVHQLFSQHYRATIGVDFALKVLNWD R Y V Y R A 0 1 0 0 0 2 0 0 2 0 1 0 0 1 0 1 0 0 2 1 0 0 11 0 1476.7262 Q13637 Q13637 45 55 RAB32 Ras-related protein Rab-32 yes yes 2;3 3.2376E-05 135.86 By MS/MS By MS/MS By matching 3 2 1 1.3761 1.3028 41.537 6 Median 1.4338 1.3616 25.549 3 0 Median 1.0147 0.8598 33.369 2 0 Median 2.1943 2.0663 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34985000 14363000 20622000 24448000 9800500 14648000 8563500 4004200 4559300 1973500 558280 1415200 0 0 0 0 0 0 0 0 0 39857 2833 41849 211249;211250;211251;211252;211253;211254 214732;214733;214734;214735;214736 214732 5 YVIHTVGPIAYGEPSASQAAELR TGKAKITGGYRLPAKYVIHTVGPIAYGEPS IAYGEPSASQAAELRSCYLSSLDLLLEHRL K Y V L R S 4 1 0 0 0 1 2 2 1 2 1 0 0 0 2 2 1 0 2 2 0 0 23 0 2428.2387 Q9BQ69 Q9BQ69 222 244 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 3 1.7513E-38 164.74 By MS/MS By matching By MS/MS By MS/MS By MS/MS By matching 1 1 1 1 1 1 0.89451 0.81864 32.084 6 Median 0.60623 0.57709 NaN 1 0 Median 1.0797 0.91295 NaN 1 0 Median 0.54688 0.52519 NaN 1 0 Median 1.2353 1.0223 NaN 1 0 Median 0.74107 0.73407 NaN 1 0 Median 1.4252 1.1736 NaN 1 0 Median 106800000 62726000 44075000 88572000 53145000 35427000 5318700 2546300 2772400 7077500 4180500 2897000 1835100 775500 1059600 3738900 1985600 1753300 258450 92352 166100 39858 3785 41850 211255;211256;211257;211258;211259;211260 214737;214738;214739;214740;214741;214742 214738 6 YVIYIER KGQQIGKVVQVYRKKYVIYIERVQREKANG VVQVYRKKYVIYIERVQREKANGTTVHVGI K Y V E R V 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 2 1 0 0 7 0 954.51747 P61254;J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;J3KS10 P61254 78 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0017105 114.19 By MS/MS By MS/MS By matching By MS/MS By MS/MS By MS/MS 3 4 1 1 4 6 1.1164 1.0604 19.41 19 Median 1.0462 0.99658 9.4334 3 0 Median 1.1638 0.97424 23.095 4 0 Median 1.267 1.2165 NaN 1 0 Median 1.2767 1.0622 NaN 1 0 Median 1.173 1.1909 24.781 4 0 Median 1.2137 1.0195 13.802 6 0 Median 412450000 186750000 225710000 189880000 89169000 100710000 59684000 26752000 32932000 40134000 17685000 22448000 10586000 4647900 5937700 47803000 22107000 25695000 64365000 26386000 37979000 39859 2554 41851 211261;211262;211263;211264;211265;211266;211267;211268;211269;211270;211271;211272;211273;211274;211275;211276;211277;211278;211279 214743;214744;214745;214746;214747;214748;214749;214750;214751;214752;214753;214754;214755;214756;214757;214758;214759 214743 17 YVKPTEPVTDYR RVSIVNQYGKCVYDKYVKPTEPVTDYRTAV YDKYVKPTEPVTDYRTAVSGIRPENLKQGE K Y V Y R T 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 2 0 2 2 0 0 12 1 1466.7405 Q9GZR2 Q9GZR2 279 290 REXO4 RNA exonuclease 4 yes yes 3 0.010286 27.409 By MS/MS By MS/MS By matching By MS/MS 1 1 2 3 0.82632 0.83571 23.505 7 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65834 0.73262 NaN 1 0 Median 0.77484 0.7271 NaN 1 0 Median 0.8299 0.88827 3.0952 2 0 Median 1.2903 1.2104 37.68 3 0 Plateau 21904000 9569800 12334000 0 0 0 0 0 0 1946000 1025500 920490 1193100 647210 545910 12870000 5815100 7055300 5894800 2082100 3812700 39860 3912 41852 211280;211281;211282;211283;211284;211285;211286 214760;214761;214762 214762 3 YVLALVK TLEPICDADPSALAKYVLALVKKDKSEKEL ADPSALAKYVLALVKKDKSEKELKALCIDQ K Y V V K K 1 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 7 0 804.51093 Q5T8P6 Q5T8P6 35 41 RBM26 RNA-binding protein 26 no no 2 0.036564 46.766 By matching By matching By MS/MS By matching 1 2 1 1 1.0118 0.98779 20.825 5 Median 0.86186 0.87179 NaN 1 0 Median 1.3576 1.1698 23.916 2 0 Median 1.0118 1.0952 NaN 1 0 Median 0.95647 0.81704 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5904900 2874000 3030800 1034600 435110 599450 1544300 716170 828150 2981700 1559800 1421900 344290 162990 181300 0 0 0 0 0 0 39861 3097 41853 211287;211288;211289;211290;211291 214763 214763 1 YVLEEAEQLEPR SERVCDIILPRLQKRYVLEEAEQLEPRVSA QKRYVLEEAEQLEPRVSALEEDMDDVESSE R Y V P R V 1 1 0 0 0 1 4 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 12 0 1474.7304 Q8NAV1 Q8NAV1 169 180 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 1.514E-30 177.06 By MS/MS By MS/MS 1 1 0.84873 0.91701 14.362 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.92884 1.015 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.77553 0.82846 NaN 1 0 Median NaN NaN NaN 0 0 Median 21881000 11586000 10296000 0 0 0 0 0 0 18722000 9984300 8738100 0 0 0 3158800 1601300 1557500 0 0 0 39862 3400 41854 211292;211293 214764;214765 214764 2 YVLENHPGTNSNYQMHLLK AMNEPKTCSTTALKKYVLENHPGTNSNYQM NHPGTNSNYQMHLLKKTLQKCEKNGWMEQI K Y V L K K 0 0 3 0 0 1 1 1 2 0 3 1 1 0 1 1 1 0 2 1 0 0 19 0 2257.095 Q5SSJ5;B0QZK4 Q5SSJ5 367 385 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3;4 7.5169E-08 62.165 By MS/MS By matching By MS/MS By matching 2 1 6 3 0.87058 0.83053 17.259 12 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69607 0.68902 2.1026 2 0 Median 1.0091 0.87847 NaN 1 0 Median 0.81074 0.79185 14.973 6 1 Median 1.1394 0.95723 13.805 3 0 Median 214460000 116020000 98434000 0 0 0 0 0 0 75877000 44399000 31478000 576440 297860 278580 134870000 69850000 65023000 3131900 1477800 1654100 39863 3075 41855 211294;211295;211296;211297;211298;211299;211300;211301;211302;211303;211304;211305 214766;214767;214768;214769;214770;214771;214772;214773;214774;214775 214769 10 YVLENHPGTNSNYQMHLLKK AMNEPKTCSTTALKKYVLENHPGTNSNYQM HPGTNSNYQMHLLKKTLQKCEKNGWMEQIS K Y V K K T 0 0 3 0 0 1 1 1 2 0 3 2 1 0 1 1 1 0 2 1 0 0 20 1 2385.1899 Q5SSJ5;B0QZK4 Q5SSJ5 367 386 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 3;4;5 1.3353E-10 86.8 By MS/MS 6 0.72933 0.79709 22.006 6 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.72933 0.79709 22.006 6 0 Median NaN NaN NaN 0 0 Median 93077000 54833000 38243000 0 0 0 0 0 0 0 0 0 0 0 0 93077000 54833000 38243000 0 0 0 39864 3075 41856 211306;211307;211308;211309;211310;211311 214776;214777;214778;214779;214780 214779 5 YVLEPEISFTSDNSFAK CQSKLSDMPLKSFYRYVLEPEISFTSDNSF LEPEISFTSDNSFAKGPIAKFLDMPQSPLF R Y V A K G 1 0 1 1 0 0 2 0 0 1 1 1 0 2 1 3 1 0 1 1 0 0 17 0 1945.9309 Q9NYU2 Q9NYU2 1039 1055 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 yes yes 2 1.3542E-05 79.82 By MS/MS By matching 2 1 1.0985 1.0066 25.592 2 Median 0.86871 0.83999 NaN 1 0 Median 1.3891 1.2063 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12783000 6610100 6172600 11973000 6268800 5704300 809520 341280 468250 0 0 0 0 0 0 0 0 0 0 0 0 39865 4179 41857 211312;211313;211314 214781;214782 214781 2 YVLGDTAMQK TASVEIDDALYSRQRYVLGDTAMQKMAKSH YSRQRYVLGDTAMQKMAKSHVFLSGMGGLG R Y V Q K M 1 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 1 0 1 1 0 0 10 0 1124.5536 A0AVT1 A0AVT1 49 58 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2 0.029185 34.387 By matching By MS/MS 1 1 0.91933 0.84511 18.562 2 Median 0.745 0.74116 NaN 1 0 Median 1.1344 0.96364 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8292300 3894700 4397600 2204500 1046100 1158400 6087800 2848600 3239200 0 0 0 0 0 0 0 0 0 0 0 0 39866 489 41858 211315;211316 214783;214784 214784 2 YVLGMQELFR GSMAPWCSVSSGPSRYVLGMQELFRGHSKT SGPSRYVLGMQELFRGHSKTREFLAHSAKV R Y V F R G 0 1 0 0 0 1 1 1 0 0 2 0 1 1 0 0 0 0 1 1 0 0 10 0 1254.6431 Q96J01;D6RGZ2 Q96J01 34 43 THOC3 THO complex subunit 3 yes no 2 0.0005744 84.476 By MS/MS By matching By MS/MS By matching By matching By matching 2 5 5 2 1 2 1.1315 1.061 23.598 17 Median 1.1362 1.108 6.1066 2 0 Median 1.3954 1.175 21.128 5 0 Median 0.97445 1.0306 16.549 5 0 Median 0.97926 0.83144 26.83 2 0 Median 1.9269 1.9804 NaN 1 0 Median 1.2356 1.015 6.2708 2 0 Median 176930000 83230000 93699000 92313000 42909000 49404000 26685000 12062000 14622000 51323000 25245000 26079000 1289500 596250 693220 1466800 545580 921230 3851500 1871800 1979700 39867 3682 41859;41860 211317;211318;211319;211320;211321;211322;211323;211324;211325;211326;211327;211328;211329;211330;211331;211332;211333 214785;214786;214787;214788;214789;214790;214791 214791 1809 7 YVLGYKQTLK ESINSRLQLVMKSGKYVLGYKQTLKMIRQG MKSGKYVLGYKQTLKMIRQGKAKLVILANN K Y V L K M 0 0 0 0 0 1 0 1 0 0 2 2 0 0 0 0 1 0 2 1 0 0 10 1 1211.6914 E5RI99;P62888;E5RJH3;A0A0C4DH44 E5RI99 27 36 RPL30 60S ribosomal protein L30 yes no 2;3 0.00012945 107.15 By matching By MS/MS 1 2 1.1927 1.034 44.419 3 Median 0.47762 0.48615 NaN 1 0 Median 1.2099 1.0489 2.025 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23070000 10723000 12347000 989140 485590 503550 22081000 10238000 11843000 0 0 0 0 0 0 0 0 0 0 0 0 39868 849 41861 211334;211335;211336 214792;214793;214794;214795 214794 4 YVLHCQGTEEEK AVEILIVYENLDIMRYVLHCQGTEEEKILY IMRYVLHCQGTEEEKILYLTPEQEKDKSHF R Y V E K I 0 0 0 0 1 1 3 1 1 0 1 1 0 0 0 0 1 0 1 1 0 0 12 0 1491.6664 B7Z7P8;P62495 B7Z7P8 317 328 ETF1 Eukaryotic peptide chain release factor subunit 1 yes no 2;3 0.0081885 39.622 By matching By MS/MS By MS/MS By matching By matching 1 2 2 2 1 0.96015 0.85118 9.0315 7 Median 0.8347 0.81683 NaN 1 0 Median 0.90389 0.77324 NaN 1 0 Median 0.9851 0.93363 9.2375 2 0 Median 0.99378 0.83646 2.4667 2 0 Median NaN NaN NaN 0 0 Median 1.1465 0.95631 NaN 1 0 Median 55361000 26894000 28467000 1535100 720110 814960 2762600 1551300 1211300 48235000 23307000 24929000 2220600 1063100 1157500 0 0 0 607580 252950 354640 39869 638 41862 211337;211338;211339;211340;211341;211342;211343;211344 214796;214797;214798;214799 214797 4 YVLINWVGEDVPDAR YGFCSVKDSQAALPKYVLINWVGEDVPDAR YVLINWVGEDVPDARKCACASHVAKVAEFF K Y V A R K 1 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 3 0 0 15 0 1744.8784 Q16643;D6R9W4;D6RFI1;D6RCR4 Q16643 80 94 DBN1 Drebrin yes no 2 1.3911E-09 105.32 By MS/MS By matching 1 2 0.96126 0.84918 36.215 3 Median NaN NaN NaN 0 0 Median 0.96126 0.83136 NaN 1 0 Median 1.1053 1.1557 43.585 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 26826000 13591000 13235000 0 0 0 24903000 12524000 12379000 1923800 1067500 856310 0 0 0 0 0 0 0 0 0 39870 2991 41863 211345;211346;211347 214800;214801 214800 2 YVLKPATEGK GQEERERLVRMYFDKYVLKPATEGKQRLKL MYFDKYVLKPATEGKQRLKLAQFDYGRKCS K Y V G K Q 1 0 0 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 1 0 0 10 1 1104.6179 H0Y2W2;Q5SV16;Q9NVI7 H0Y2W2 478 487 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 0.0073554 80.438 By MS/MS 1 1.336 1.2494 NaN 1 Median NaN NaN NaN 0 0 Median 1.336 1.2494 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5896600 2403900 3492700 0 0 0 5896600 2403900 3492700 0 0 0 0 0 0 0 0 0 0 0 0 39871 1140;4133 41864 211348 214802 214802 1 YVLLSIR EPKWMGGAELSDDGRYVLLSIREGCDPVNR AELSDDGRYVLLSIREGCDPVNRLWYCDLQ R Y V I R E 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 1 1 0 0 7 0 862.52764 A0A499FJL1;P48147 A0A499FJL1 180 186 PREP Prolyl endopeptidase yes no 2 0.026776 52.683 By MS/MS By matching By matching 1 2 1 1.1572 1.0521 21.506 4 Median 1.015 0.98027 NaN 1 0 Median 1.1572 1.0041 16.605 2 0 Median 1.416 1.4629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10701000 5232100 5468800 3858900 1864800 1994100 6019700 2897300 3122400 822250 469990 352270 0 0 0 0 0 0 0 0 0 39872 478 41865 211349;211350;211351;211352 214803;214804 214804 2 YVLQGFFRPSETVGDLR ERYPKVALRVLFPDRYVLQGFFRPSETVGD LQGFFRPSETVGDLRDFVRSHLGNPELSFY R Y V L R D 0 2 0 1 0 1 1 2 0 0 2 0 0 2 1 1 1 0 1 2 0 0 17 1 1983.0214 Q9BZE9;J3KRY8;J3KRF7 Q9BZE9 401 417 ASPSCR1 Tether containing UBX domain for GLUT4 yes no 3 0.028513 15.884 By MS/MS 1 0.74799 0.73694 NaN 1 Median 0.74799 0.73694 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1681700 806120 875610 1681700 806120 875610 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39873 3899 41866 211353 214805 214805 1 YVLSMSEERHER ITYDDPIKTSWTPPRYVLSMSEERHERVRK PPRYVLSMSEERHERVRKKYHILVEGDGIP R Y V E R V 0 2 0 0 0 0 3 0 1 0 1 0 1 0 0 2 0 0 1 1 0 0 12 1 1534.7198 Q9UJV9;A0A499FJW5;H0YA06;D6RGI7 Q9UJV9 151 162 DDX41 Probable ATP-dependent RNA helicase DDX41 yes no 3 0.0088954 29.341 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.3411 1.3144 18.878 4 Median 1.1186 1.1021 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5495 1.7291 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.2583 1.3672 NaN 1 0 Median 1.4294 1.2637 NaN 1 0 Median 12768000 5606300 7162200 4782600 2350600 2432000 0 0 0 2859700 1223500 1636200 0 0 0 3231200 1326500 1904700 1895000 705730 1189200 39874 4299 41867 211354;211355;211356;211357 214806;214807;214808;214809 214807 4 YVLVAGITPTPLGEGK RLSVLERLKDQADGKYVLVAGITPTPLGEG VLVAGITPTPLGEGKSTVTIGLVQALTAHL K Y V G K S 1 0 0 0 0 0 1 3 0 1 2 1 0 0 2 0 2 0 1 2 0 0 16 0 1613.9029 A0A087WVM4;B7ZM99;Q6UB35 A0A087WVM4 349 364 MTHFD1L Monofunctional C1-tetrahydrofolate synthase, mitochondrial yes no 2 0.0006274 57.836 By MS/MS 1 0.82145 0.81522 NaN 1 Median 0.82145 0.81522 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2440700 1400600 1040100 2440700 1400600 1040100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39875 43 41868 211358 214810 214810 1 YVMGNNPADLLAVDSR VATDLDTGRPSTTVRYVMGNNPADLLAVDS VMGNNPADLLAVDSRTGKLTLKNKVTKEQY R Y V S R T 2 1 2 2 0 0 0 1 0 0 2 0 1 0 1 1 0 0 1 2 0 0 16 0 1733.8407 Q02413 Q02413 423 438 DSG1 Desmoglein-1 yes yes 2 1.8696E-08 102.62 By MS/MS By MS/MS By MS/MS 1 2 3 0.68796 0.68665 101.34 3 Plateau 0.70795 0.70546 NaN 1 1 Median NaN NaN NaN 0 0 Median 0.1108 0.12222 7.0468 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15152000 12008000 3144100 6204600 3579100 2625500 0 0 0 5399900 4881200 518670 0 0 0 3547400 3547400 0 0 0 0 39876 2698 41869;41870 211359;211360;211361;211362;211363;211364 214811;214812;214813;214814;214815;214816 214811 1390 6 YVMTTTTLER TENMPIKINLIAPPRYVMTTTTLERTEGLS IAPPRYVMTTTTLERTEGLSVLSQAMAVIK R Y V E R T 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 4 0 1 1 0 0 10 0 1213.6013 P05198;G3V4T5;H0YJS4 P05198 235 244 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes no 2 2.2306E-05 145.92 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 3 3 4 1 4 1.2881 1.1602 12.825 19 Median 1.2547 1.188 3.0269 4 1 Median 1.2855 1.0687 7.7787 3 1 Median 1.4045 1.3594 15.754 3 1 Plateau 1.302 1.0991 7.8627 4 0 Median 1.5181 1.5788 NaN 1 0 Median 1.2912 1.0111 14.42 4 0 Median 531310000 231450000 299870000 201100000 92114000 108990000 64357000 28019000 36338000 93753000 38317000 55436000 157110000 66913000 90193000 5196300 2018100 3178200 9798100 4063800 5734300 39877 1862 41871;41872 211365;211366;211367;211368;211369;211370;211371;211372;211373;211374;211375;211376;211377;211378;211379;211380;211381;211382;211383 214817;214818;214819;214820;214821;214822;214823;214824;214825;214826;214827;214828;214829;214830;214831;214832;214833;214834;214835;214836;214837;214838;214839;214840;214841;214842;214843;214844;214845 214830 619 29 YVNMQDPEMDMK GGRSLHSSAVAATYKYVNMQDPEMDMKSVT TYKYVNMQDPEMDMKSVTDRAARTLLWTEL K Y V M K S 0 0 1 2 0 1 1 0 0 0 0 1 3 0 1 0 0 0 1 1 0 0 12 0 1499.6095 E9PN51;F8W9K7;E9PPW7;O00217 E9PN51 38 49 NDUFS8 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial yes no 2 0.00042336 79.148 By MS/MS By MS/MS 2 1 0.86773 0.80853 24.671 3 Median 0.85432 0.80166 1.2067 2 0 Median 1.4175 1.2287 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18146000 9384800 8761300 16606000 8760300 7845600 1540300 624520 915730 0 0 0 0 0 0 0 0 0 0 0 0 39878 971 41873 211384;211385;211386 214846;214847;214848;214849 214846 4 YVPAIAHLIHSLNPVR KNNDFYVTGESYAGKYVPAIAHLIHSLNPV VPAIAHLIHSLNPVREVKINLNGIAIGDGY K Y V V R E 2 1 1 0 0 0 0 0 2 2 2 0 0 0 2 1 0 0 1 2 0 0 16 0 1799.0206 Q9H3G5;C9JLV0 Q9H3G5 209 224 CPVL Probable serine carboxypeptidase CPVL yes no 3 3.7992E-05 62.377 By matching By matching By MS/MS By MS/MS 1 1 1 1 1.1968 1.083 26.169 4 Median 1.1062 1.08 NaN 1 0 Median 1.2949 1.0861 NaN 1 0 Median 0.85485 0.82519 NaN 1 0 Median 1.8132 1.5611 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 128110000 62141000 65970000 566460 213480 352970 30801000 13037000 17763000 81854000 43795000 38059000 14890000 5095400 9795000 0 0 0 0 0 0 39879 3952 41874 211387;211388;211389;211390 214850;214851;214852 214850 3 YVPGSASMGTTMAGVDPFTGNSAYR SNTLPTADPFTGAGRYVPGSASMGTTMAGV TMAGVDPFTGNSAYRSAASKTMNIYFPKKE R Y V Y R S 3 1 1 1 0 0 0 4 0 0 0 0 2 1 2 3 3 0 2 2 0 0 25 0 2536.1363 Q9Y263;E5RIM3;H0YBW4;H0YC16 Q9Y263 500 524 PLAA Phospholipase A-2-activating protein yes no 3 0.0027065 24.644 By MS/MS 2 0.70982 0.70741 5.6338 2 Median 0.70982 0.70741 5.6338 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6857000 4086700 2770300 6857000 4086700 2770300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39880 4374 41875 211391;211392 214853 214853 1 YVPGSSGSSNTLPTADPFTGAGR LGNPSFSDPFTGGGRYVPGSSGSSNTLPTA SNTLPTADPFTGAGRYVPGSASMGTTMAGV R Y V G R Y 2 1 1 1 0 0 0 4 0 0 1 0 0 1 3 4 3 0 1 1 0 0 23 0 2238.0553 Q9Y263;E5RIM3;H0YBW4 Q9Y263 477 499 PLAA Phospholipase A-2-activating protein yes no 2 5.2277E-23 101.39 By MS/MS 1 0.57657 0.56759 NaN 1 Median 0.57657 0.56759 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8773300 5681600 3091700 8773300 5681600 3091700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39881 4374 41876 211393 214854 214854 1 YVPLADVK DFRMEESFSSKYVPKYVPLADVKSEKTKKG SSKYVPKYVPLADVKSEKTKKGRSIPVWIK K Y V V K S 1 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 0 903.50657 P42167;G5E972;H0YJH7 P42167 394 401 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.010415 58.917 By matching By MS/MS By MS/MS By matching By MS/MS 1 2 1 1 3 1.3022 1.089 30.26 8 Median NaN NaN NaN 0 0 Median 1.7009 1.4918 NaN 1 0 Median 0.79254 0.76881 5.5729 2 0 Median 1.3198 1.1318 NaN 1 0 Median 0.99739 1.0216 NaN 1 0 Median 1.757 1.3972 26.347 3 0 Median 107240000 52928000 54307000 0 0 0 343500 110010 233480 58493000 32384000 26109000 8200500 3550600 4649900 4683700 2102400 2581300 35514000 14781000 20733000 39882 2307 41877 211394;211395;211396;211397;211398;211399;211400;211401 214855;214856;214857;214858;214859;214860;214861;214862;214863 214859 9 YVPLADVKSEK DFRMEESFSSKYVPKYVPLADVKSEKTKKG YVPKYVPLADVKSEKTKKGRSIPVWIKILL K Y V E K T 1 0 0 1 0 0 1 0 0 0 1 2 0 0 1 1 0 0 1 2 0 0 11 1 1247.6762 P42167;G5E972 P42167 394 404 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes no 2 0.032287 43.512 By MS/MS 1 0.70317 0.7499 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.70317 0.7499 NaN 1 0 Median NaN NaN NaN 0 0 Median 2931400 1893100 1038300 0 0 0 0 0 0 0 0 0 0 0 0 2931400 1893100 1038300 0 0 0 39883 2307 41878 211402 214864 214864 1 YVPLDQEAYSR IVKDPLFYLDAQKGRYVPLDQEAYSRIQAG QKGRYVPLDQEAYSRIQAGEEKL_______ R Y V S R I 1 1 0 1 0 1 1 0 0 0 1 0 0 0 1 1 0 0 2 1 0 0 11 0 1339.6408 Q6P1M0 Q6P1M0 625 635 SLC27A4 Long-chain fatty acid transport protein 4 yes yes 2 0.00017512 79.148 By MS/MS By MS/MS 1 1 0.85835 0.85346 NaN 1 Median 0.85835 0.85346 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6604200 3355700 3248500 6604200 3355700 3248500 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39884 3152 41879 211403;211404 214865;214866 214865 2 YVPPAAGR DFDIIHNANDTFTVKYVPPAAGRYTIKVLF NDTFTVKYVPPAAGRYTIKVLFASQEIPAS K Y V G R Y 2 1 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 1 1 0 0 8 0 829.44464 O75369;E7EN95 O75369 811 818 FLNB Filamin-B yes no 2 0.060654 32.47 By matching By MS/MS 1 2 0.91745 0.78075 2.5134 3 Median 0.82006 0.80988 NaN 1 0 Median 0.91942 0.77628 0.81329 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3184400 1665400 1519000 309070 174990 134080 2875300 1490400 1384900 0 0 0 0 0 0 0 0 0 0 0 0 39885 1664 41880 211405;211406;211407 214867 214867 1 YVPPSLR GELEPVQATQNKTGKYVPPSLRDGASRRGE ATQNKTGKYVPPSLRDGASRRGESMQPNRR K Y V L R D 0 1 0 0 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 7 0 830.46504 O75821;K7ER90;K7EL20;K7EP16;K7ENA8 O75821 213 219 EIF3G Eukaryotic translation initiation factor 3 subunit G yes no 2 0.0036486 103.28 By MS/MS By MS/MS By MS/MS 1 1 1 0.83208 0.81961 5.7578 3 Median 0.82353 0.81961 NaN 1 0 Median 0.931 0.81255 NaN 1 0 Median 0.83208 0.9014 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 21681000 11764000 9916700 9474100 5295900 4178300 8744800 4540600 4204300 3462200 1927900 1534200 0 0 0 0 0 0 0 0 0 39886 1697 41881 211408;211409;211410 214868;214869;214870;214871 214869 4 YVPVKGDHVIGIVTAK GSGGGVYWVDSQQKRYVPVKGDHVIGIVTA VPVKGDHVIGIVTAKSGDIFKVDVGGSEPA R Y V A K S 1 0 0 1 0 0 0 2 1 2 0 2 0 0 1 0 1 0 1 4 0 0 16 1 1694.9719 Q9NQT5 Q9NQT5 109 124 EXOSC3 Exosome complex component RRP40 yes yes 2;3;4 4.4317E-05 72.29 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 3 2 3 3 2 1.0611 0.98544 21.741 13 Median 1.0735 1.0481 42.096 3 0 Median 1.1288 1.0169 8.7898 2 0 Median 0.94392 0.98291 8.0519 3 0 Median 1.1223 0.98544 5.8333 3 0 Median 0.85935 0.91444 16.875 2 0 Median NaN NaN NaN 0 0 Median 111200000 55502000 55702000 43052000 21159000 21893000 7795600 3786700 4008900 39629000 20236000 19393000 10814000 4813500 6000500 9914200 5507400 4406800 0 0 0 39887 4067 41882 211411;211412;211413;211414;211415;211416;211417;211418;211419;211420;211421;211422;211423 214872;214873;214874;214875;214876;214877;214878;214879;214880;214881;214882;214883;214884 214883 13 YVPVRPRPPITLLR RKSPPKEYIDEEGVRYVPVRPRPPITLLRH RYVPVRPRPPITLLRHYRNPWKAAYHHFQR R Y V L R H 0 3 0 0 0 0 0 0 0 1 2 0 0 0 4 0 1 0 1 2 0 0 14 2 1676.025 A0A2R8YDB8;H7BXF5;Q9H0E3 A0A2R8YDB8 897 910 SAP130 Histone deacetylase complex subunit SAP130 yes no 3 0.0064034 27.649 By MS/MS 1 0.45652 0.52093 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.45652 0.52093 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25744000 17878000 7866000 0 0 0 0 0 0 25744000 17878000 7866000 0 0 0 0 0 0 0 0 0 39888 395 41883 211424 214885 214885 1 YVPYVGDSK LYTPGEEPDHCVVIKYVPYVGDSKRALDEY HCVVIKYVPYVGDSKRALDEYTSELMLGGT K Y V S K R 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 2 2 0 0 9 0 1026.5022 Q9NPH2;J3QS51 Q9NPH2 385 393 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2 0.0049967 58.981 By MS/MS By MS/MS 1 1 0.69888 0.62706 28.835 2 Median 0.53703 0.5114 NaN 1 0 Median 0.9095 0.76888 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12698000 7082000 5615800 6663600 4075800 2587800 6034300 3006200 3028100 0 0 0 0 0 0 0 0 0 0 0 0 39889 4052 41884 211425;211426 214886;214887 214886 2 YVPYVGDSKR LYTPGEEPDHCVVIKYVPYVGDSKRALDEY CVVIKYVPYVGDSKRALDEYTSELMLGGTN K Y V K R A 0 1 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 2 2 0 0 10 1 1182.6033 Q9NPH2;J3QS51 Q9NPH2 385 394 ISYNA1 Inositol-3-phosphate synthase 1 yes no 2;3 0.009417 57.96 By MS/MS 2 2.2912 2.3198 NaN 1 Median 2.2912 2.3198 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3883200 882980 3000200 3883200 882980 3000200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39890 4052 41885 211427;211428 214888;214889 214888 2 YVQDFHPR ITVDPERDDVEAMARYVQDFHPRLLGLTGS DVEAMARYVQDFHPRLLGLTGSTKQVAQAS R Y V P R L 0 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 1 0 0 8 0 1060.509 O43819 O43819 180 187 SCO2 Protein SCO2 homolog, mitochondrial yes yes 2 0.031031 38.792 By MS/MS By matching By matching 1 1 1 0.92077 0.86785 33.759 3 Median 0.92077 0.86785 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.96728 0.90876 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.50525 0.49556 NaN 1 0 Median NaN NaN NaN 0 0 Median 5350900 3039000 2311900 1794500 1062400 732100 0 0 0 1778000 940480 837540 0 0 0 1778300 1036000 742290 0 0 0 39891 1595 41886 211429;211430;211431 214890 214890 1 YVQELAAVR GRQFLEVELDQAREKYVQELAAVRADAETR DQAREKYVQELAAVRADAETRLAEVQREAQ K Y V V R A 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1047.5713 A0A087WY61;K4DIE0;Q14980 Q14980 1476 1484 NUMA1 Nuclear mitotic apparatus protein 1 no no 2 0.00046424 124.08 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1 2 1.0807 1.0066 7.2277 5 Median NaN NaN NaN 0 0 Median 1.2618 1.0724 NaN 1 0 Median 0.93906 1.0239 NaN 1 0 Median 1.14 1.0066 NaN 1 0 Median 0.94373 0.95274 NaN 1 0 Median 1.0807 0.88857 NaN 1 0 Median 281540000 137010000 144530000 0 0 0 18572000 8415500 10156000 155420000 76838000 78581000 12477000 5557700 6918900 61865000 30431000 31434000 33208000 15768000 17440000 39892 2905;77 41887 211432;211433;211434;211435;211436;211437;211438 214891;214892;214893;214894;214895;214896;214897;214898;214899;214900;214901;214902;214903 214893 13 YVQLPADEVDTQLLQDAAR MLSVKNCFIRGSVVRYVQLPADEVDTQLLQ PADEVDTQLLQDAARKEALQQKQ_______ R Y V A R K 3 1 0 3 0 3 1 0 0 0 3 0 0 0 1 0 1 0 1 2 0 0 19 0 2144.075 Q9Y333 Q9Y333 69 87 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2;3 4.7131E-18 125.53 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 3 4 1 1 0.87536 0.86361 22.507 10 Median 0.94668 0.9243 NaN 1 0 Median 1.0928 0.92549 43.914 3 0 Median 0.78216 0.78677 7.0481 4 0 Median NaN NaN NaN 0 0 Median 0.84743 0.89775 NaN 1 0 Median 1.0734 0.83076 NaN 1 0 Median 64865000 34437000 30429000 2702300 1320400 1381900 3373600 1566000 1807500 55616000 30042000 25574000 0 0 0 2755400 1323900 1431500 418550 184570 233980 39893 4405 41888 211439;211440;211441;211442;211443;211444;211445;211446;211447;211448 214904;214905;214906;214907;214908;214909;214910;214911;214912;214913 214907 10 YVQQLQR PSRFLASVLHNGLGRYVQQLQRLSFSVSRD VLHNGLGRYVQQLQRLSFSVSRDGASSRGA R Y V Q R L 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 933.50321 H0Y6Y8;B1AL05;Q8N983;M0R051 H0Y6Y8 19 25 MRPL43 39S ribosomal protein L43, mitochondrial yes no 2 0.045339 42.464 By matching By MS/MS 1 1 1.0527 1.0293 40.523 2 Median 0.82075 0.77289 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3502 1.3709 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2218200 1048500 1169700 1034400 532730 501680 0 0 0 1183800 515820 668000 0 0 0 0 0 0 0 0 0 39894 570 41889 211449;211450 214914 214914 1 YVQSGMMMSQYK ARSPNVFREKSMQNRYVQSGMMMSQYKLSQ QNRYVQSGMMMSQYKLSQNSMHSSPASSNY R Y V Y K L 0 0 0 0 0 2 0 1 0 0 0 1 3 0 0 2 0 0 2 1 0 0 12 0 1451.6247 A0A590UJS4;Q6KC79 A0A590UJS4 116 127 NIPBL Nipped-B-like protein yes no 2 0.0015775 71.451 By MS/MS By MS/MS 2 2 0.94326 1.001 5.5852 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.95883 1.0317 2.7857 2 2 Median NaN NaN NaN 0 0 Median 0.92137 0.95516 5.1344 2 0 Median NaN NaN NaN 0 0 Median 19572000 9492500 10080000 0 0 0 0 0 0 10150000 5031100 5118700 0 0 0 9422300 4461400 4960900 0 0 0 39895 488 41890 211451;211452;211453;211454 214915;214916;214917;214918 214918 4 YVRPFLNSISK LAKTGQAAELGGLLKYVRPFLNSISKAKAA GLLKYVRPFLNSISKAKAARLVRSLLDLFL K Y V S K A 0 1 1 0 0 0 0 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 11 1 1322.7347 O00231;J3QRY4 O00231 72 82 PSMD11 26S proteasome non-ATPase regulatory subunit 11 yes no 2;3 3.6831E-05 133.05 By MS/MS By MS/MS By MS/MS By MS/MS 4 5 2 1 0.99819 0.98986 37.01 12 Median 0.99228 0.98986 9.9663 4 0 Median 0.96155 0.90594 22.817 5 2 Median 0.60303 0.61103 95.28 2 0 Median 1.1203 1.0701 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 123420000 62073000 61351000 60038000 29712000 30326000 32976000 17062000 15914000 15068000 8257600 6810100 15343000 7041600 8301200 0 0 0 0 0 0 39896 1448 41891 211455;211456;211457;211458;211459;211460;211461;211462;211463;211464;211465;211466 214919;214920;214921;214922;214923;214924;214925;214926;214927;214928;214929;214930;214931;214932;214933 214932 15 YVRPGGGFEPNFMLFEK HQENAKNEEILNSLKYVRPGGGFEPNFMLF RPGGGFEPNFMLFEKCEVNGAGAHPLFAFL K Y V E K C 0 1 1 0 0 0 2 3 0 0 1 1 1 3 2 0 0 0 1 1 0 0 17 1 1986.9662 A0A087WUQ6;P07203;A0A2R8Y6B6 A0A087WUQ6 97 113 GPX1 Glutathione peroxidase;Glutathione peroxidase 1 yes no 3 0.00034908 38.093 By MS/MS 1 0.80242 0.84315 NaN 1 Median 0.80242 0.84315 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3759600 1899600 1860000 3759600 1899600 1860000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39897 33 41892 211467 214934 214934 1 YVSEVVIGAPYAVTAELLSHFK IMNLHERTLSVLACRYVSEVVIGAPYAVTA GAPYAVTAELLSHFK_______________ R Y V F K - 3 0 0 0 0 0 2 1 1 1 2 1 0 1 1 2 1 0 2 4 0 0 22 0 2392.2678 I3L2Q1;I3L1R7;Q99447;I3L1L9 I3L2Q1 265 286 PCYT2 Ethanolamine-phosphate cytidylyltransferase yes no 3 1.8977E-09 55.588 By MS/MS 1 0.77784 0.6708 NaN 1 Median NaN NaN NaN 0 0 Median 0.77784 0.6708 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2078300 1179400 898890 0 0 0 2078300 1179400 898890 0 0 0 0 0 0 0 0 0 0 0 0 39898 1279 41893 211468 214935;214936 214936 2 YVSLHVR MDQASRAMIENFNAKYVSLHVRKSNRAALH MIENFNAKYVSLHVRKSNRAALHLYSNTLN K Y V V R K 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 2 0 0 7 0 872.48684 P41227;C9JN83;F8W808;A8MWP7;Q9BSU3;C9JW55 P41227 106 112 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 2 0.013989 86.086 By MS/MS By MS/MS By MS/MS By MS/MS 1 1 1 1 1.5842 1.4338 9.8442 4 Median 1.5882 1.4977 NaN 1 1 Median 1.4846 1.242 NaN 1 0 Median 1.5801 1.5471 NaN 1 0 Median 1.6457 1.3727 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 15931000 6652000 9279100 5488900 2412900 3076000 3287500 1466800 1820800 2296200 1031000 1265200 4858500 1741400 3117000 0 0 0 0 0 0 39899 2298 41894 211469;211470;211471;211472 214937;214938;214939;214940 214940 4 YVSQYYPK RLCEPKEASYSLIRKYVSQYYPKLRVDIRP SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ K Y V P K L 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 3 1 0 0 8 0 1046.5073 Q5SSJ5;X6RGJ2;B0QZK4;Q5SWC8 Q5SSJ5 284 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes no 2 0.055161 33.642 By matching By MS/MS 1 1 0.72775 0.74828 13.722 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.65534 0.67909 NaN 1 0 Median NaN NaN NaN 0 0 Median 0.80815 0.82453 NaN 1 0 Median NaN NaN NaN 0 0 Median 20546000 12454000 8092200 0 0 0 0 0 0 6743000 4362400 2380600 0 0 0 13803000 8091500 5711700 0 0 0 39900 3075 41895 211473;211474 214941 214941 1 YVSSLTEEISK QLNRQLDMILDEQRRYVSSLTEEISKRGAG EQRRYVSSLTEEISKRGAGMPGQHGQITQQ R Y V S K R 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 3 1 0 1 1 0 0 11 0 1254.6343 P49257 P49257 362 372 LMAN1 Protein ERGIC-53 yes yes 2 0.0005343 67.726 By MS/MS By MS/MS 1 1 1.1949 1.0515 0.32771 2 Median 1.1489 1.0539 NaN 1 0 Median 1.2427 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 107790000 49493000 58297000 60276000 28090000 32186000 47515000 21403000 26111000 0 0 0 0 0 0 0 0 0 0 0 0 39901 2375 41896 211475;211476 214942;214943 214942 2 YVSSLTEEISKR QLNRQLDMILDEQRRYVSSLTEEISKRGAG QRRYVSSLTEEISKRGAGMPGQHGQITQQE R Y V K R G 0 1 0 0 0 0 2 0 0 1 1 1 0 0 0 3 1 0 1 1 0 0 12 1 1410.7355 P49257 P49257 362 373 LMAN1 Protein ERGIC-53 yes yes 2;3 9.4544E-07 142.08 By MS/MS By MS/MS By matching 2 2 2 1.3035 1.2484 15.857 5 Median 1.2312 1.2235 8.1427 2 0 Median 1.3801 1.2597 1.2798 2 0 Median 0.79278 0.88292 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 108060000 48833000 59230000 92053000 41886000 50167000 13269000 5640700 7628300 2741300 1306600 1434600 0 0 0 0 0 0 0 0 0 39902 2375 41897 211477;211478;211479;211480;211481;211482 214944;214945;214946;214947;214948;214949;214950;214951 214944 8 YVTAFNGELEDYMSDR LYGEFPGDERRKLIRYVTAFNGELEDYMSD VTAFNGELEDYMSDRVQFVITAQEWDPSFE R Y V D R V 1 1 1 2 0 0 2 1 0 0 1 0 1 1 0 1 1 0 2 1 0 0 16 0 1908.82 F5H8D7 F5H8D7 534 549 XRCC1 yes yes 2 0.00013451 55.426 By MS/MS By matching 1 1 0.96118 0.92999 2.6896 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.8951 0.94785 NaN 1 0 Median 1.0321 0.91247 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1850200 888300 961920 0 0 0 0 0 0 1769300 857920 911420 80874 30379 50495 0 0 0 0 0 0 39903 1047 41898 211483;211484 214952;214953 214953 2 YVTTILDDAK YEPRVINQMLEFAFRYVTTILDDAKIYSSH EFAFRYVTTILDDAKIYSSHAKKPNVDADD R Y V A K I 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 2 0 1 1 0 0 10 0 1137.5918 Q9HBM6;D6RHW1;D6RIY1;D6RGK3;D6RIV9 Q9HBM6 46 55 TAF9B;TAF9 Transcription initiation factor TFIID subunit 9B no no 2 0.0039357 54.982 By matching By MS/MS By matching 1 2 2 1.0253 0.90897 106.42 5 Median NaN NaN NaN 0 0 Median 1.5975 1.4392 NaN 1 0 Median 0.91807 0.87222 17.445 2 0 Median 0.33935 0.29809 157.67 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25429000 15454000 9974600 0 0 0 597150 278300 318850 21258000 12454000 8804100 3573400 2721700 851640 0 0 0 0 0 0 39904 4022 41899 211485;211486;211487;211488;211489 214954;214955;214956;214957 214957 4 YVVGLIIK RWKILPRNQCEGIKKYVVGLIIKTSSDPTC QCEGIKKYVVGLIIKTSSDPTCVEKEKVYI K Y V I K T 0 0 0 0 0 0 0 1 0 2 1 1 0 0 0 0 0 0 1 2 0 0 8 0 903.57934 O14980;C9JKM9;C9J673 O14980 105 112 XPO1 Exportin-1 yes no 2 0.008475 64.803 By MS/MS By matching By matching By matching By MS/MS 1 3 1 1 3 1.1613 1.0588 33.587 8 Median 1.1318 1.1027 NaN 1 0 Median 1.1227 1.1586 12.212 3 0 Plateau NaN NaN NaN 0 0 Median 1.3982 1.2039 NaN 1 0 Median 2.3644 2.4252 NaN 1 0 Median 1.061 0.88755 19.197 2 0 Median 10386000 4448900 5937000 5575800 2487000 3088800 3182300 1366200 1816100 0 0 0 247410 108100 139310 1141900 385320 756610 238500 102340 136160 39905 1510 41900 211490;211491;211492;211493;211494;211495;211496;211497;211498 214958;214959;214960 214959 3 YVVISQGLDKPR GFDVIEVARLNGSFRYVVISQGLDKPRAIT SFRYVVISQGLDKPRAITVHPEKGYLFWTE R Y V P R A 0 1 0 1 0 1 0 1 0 1 1 1 0 0 1 1 0 0 1 2 0 0 12 1 1373.7667 Q07954 Q07954 2000 2011 LRP1 Prolow-density lipoprotein receptor-related protein 1;Low-density lipoprotein receptor-related protein 1 85 kDa subunit;Low-density lipoprotein receptor-related protein 1 515 kDa subunit;Low-density lipoprotein receptor-related protein 1 intracellular domain yes yes 2 3.3417E-40 223.84 By MS/MS By MS/MS By matching 1 1 1 1.0885 0.70135 55.91 3 Plateau 0.61838 0.64599 NaN 1 0 Median 1.916 1.7681 NaN 1 0 Median 0.60749 0.70135 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39441000 18744000 20697000 18870000 11887000 6983300 19257000 6021900 13235000 1313700 835070 478590 0 0 0 0 0 0 0 0 0 39906 2733 41901 211499;211500;211501 214961;214962;214963 214961 3 YVVNHLGR GIVATVFGATGFLGRYVVNHLGRMGSQVII ATGFLGRYVVNHLGRMGSQVIIPYRCDKYD R Y V G R M 0 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 0 956.5192 A0A3B3ISG8;Q16795;F5GY40 A0A3B3ISG8 68 75 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes no 2 0.0066726 70.268 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.4726 1.2602 20.891 4 Median 1.0198 0.95244 NaN 1 0 Median 1.5429 1.2987 NaN 1 0 Median 1.65 1.581 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.4055 1.2229 NaN 1 0 Median 11905000 5239500 6665800 8329100 4071600 4257500 2039200 691820 1347300 926540 284540 642000 0 0 0 0 0 0 610390 191460 418920 39907 424 41902 211502;211503;211504;211505 214964;214965;214966 214965 3 YVVTSVSWWSHK EHYMASDVEWDPTGRYVVTSVSWWSHKVDN TGRYVVTSVSWWSHKVDNAYWLWTFQGRLL R Y V H K V 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 3 1 2 1 3 0 0 12 0 1477.7354 P55884 P55884 665 676 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 3 0.015316 40.113 By MS/MS 1 2.4056 2.3277 NaN 1 Median 2.4056 2.3277 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11617000 2574000 9042700 11617000 2574000 9042700 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39908 2504 41903 211506 214967 214967 1 YVVVTGITPTPLGEGK LLSALERLKHRPDGKYVVVTGITPTPLGEG VVVTGITPTPLGEGKSTTTIGLVQALGAHL K Y V G K S 0 0 0 0 0 0 1 3 0 1 1 1 0 0 2 0 3 0 1 3 0 0 16 0 1629.8978 P11586;V9GYY3;A0A384N5Y3;F5H2F4;V9GZ78;A0A494C1T2 P11586 371 386 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes no 2 2.7209E-10 130.56 By MS/MS By matching By MS/MS By MS/MS By MS/MS By MS/MS 3 1 1 2 3 4 0.94812 0.83413 28.878 14 Median 0.73778 0.70326 10.511 3 0 Plateau 0.93839 0.82058 NaN 1 0 Median 0.76284 0.82942 NaN 1 0 Median 0.94812 0.82253 2.7825 2 0 Median 1.3188 1.3638 15.74 3 0 Median 1.1039 0.95086 13.015 4 0 Median 154170000 85184000 68983000 125000000 70149000 54854000 4843800 2365100 2478700 15226000 8529400 6696700 2373600 1157000 1216600 4940900 2161300 2779600 1780500 823110 957370 39909 1968 41904 211507;211508;211509;211510;211511;211512;211513;211514;211515;211516;211517;211518;211519;211520 214968;214969;214970;214971;214972;214973;214974;214975;214976;214977;214978;214979 214976 12 YVWLVYEQDRPLK DYVGSGPPKGTGLHRYVWLVYEQDRPLKCD HRYVWLVYEQDRPLKCDEPILSNRSGDHRG R Y V L K C 0 1 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 1 2 2 0 0 13 1 1707.8984 P30086 P30086 120 132 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3 4.7508E-06 99.015 By MS/MS By matching By matching 2 1 1 0.90277 0.94216 11.269 4 Median 0.90277 0.94216 3.2281 2 0 Median 1.2054 1.1364 NaN 1 0 Median 0.85286 0.8764 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 38561000 18665000 19895000 35817000 17326000 18490000 630990 280850 350130 2113300 1058400 1054900 0 0 0 0 0 0 0 0 0 39910 2188 41905 211521;211522;211523;211524 214980;214981;214982;214983 214983 4 YVYQPMEK NTGKQHTFVETESVRYVYQPMEKLYMVLIT VETESVRYVYQPMEKLYMVLITTKNSNILE R Y V E K L 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 2 1 0 0 8 0 1056.495 B0YIW6;P48444;Q6P1Q5 B0YIW6 97 104 ARCN1 Coatomer subunit delta yes no 2 0.024929 63.48 By MS/MS 1 2.0534 1.7304 NaN 1 Median NaN NaN NaN 0 0 Median 2.0534 1.7304 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7056700 2364800 4691900 0 0 0 7056700 2364800 4691900 0 0 0 0 0 0 0 0 0 0 0 0 39911 561 41906 211525 214984 214984 1 YVYSVLDDVIPEEILGK ICMELMSTSFDKFYKYVYSVLDDVIPEEIL YSVLDDVIPEEILGKITLATVKALNHLKEN K Y V G K I 0 0 0 2 0 0 2 1 0 2 2 1 0 0 1 1 0 0 2 3 0 0 17 0 1951.019 P45985 P45985 191 207 MAP2K4 Dual specificity mitogen-activated protein kinase kinase 4 yes yes 2 3.1062E-05 52.928 By MS/MS By matching 1 1 1.0232 0.9876 18.175 2 Median NaN NaN NaN 0 0 Median 1.0167 0.86849 NaN 1 0 Median 1.0297 1.123 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1649200 778550 870640 0 0 0 1278900 605120 673830 370240 173440 196810 0 0 0 0 0 0 0 0 0 39912 2334 41907 211526;211527 214985;214986 214985 2 YVYVVTELMK HPNIITLKDVYDDGKYVYVVTELMKGGELL YDDGKYVYVVTELMKGGELLDKILRQKFFS K Y V M K G 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 2 3 0 0 10 0 1243.6522 B1AXG1;B7ZB17;P51812;B4DG22;A0A2R8Y603 B1AXG1 459 468 RPS6KA3 Ribosomal protein S6 kinase alpha-3 yes no 2 0.0023475 60.59 By MS/MS 1 0.95539 0.83555 NaN 1 Median NaN NaN NaN 0 0 Median 0.95539 0.83555 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4635400 2488300 2147100 0 0 0 4635400 2488300 2147100 0 0 0 0 0 0 0 0 0 0 0 0 39913 581 41908 211528 214987 214987 1 YWDVPPPGFEHITPMQYK LIRSPRHEKKKKVRKYWDVPPPGFEHITPM VPPPGFEHITPMQYKAMQAAGQIPATALLP K Y W Y K A 0 0 0 1 0 1 1 1 1 1 0 1 1 1 4 0 1 1 2 1 0 0 18 0 2204.0401 P26368;K7ELP8 P26368 91 108 U2AF2 Splicing factor U2AF 65 kDa subunit yes no 3 1.3757E-06 64.52 By MS/MS By matching By MS/MS 2 2 1 0.57147 0.57698 13.854 5 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.56605 0.56552 2.8389 2 0 Median 0.70503 0.61313 2.6395 2 0 Median 0.46051 0.43924 NaN 1 0 Median NaN NaN NaN 0 0 Median 23955000 15523000 8431800 0 0 0 0 0 0 18835000 12305000 6529300 1548100 906920 641160 3572200 2310800 1261400 0 0 0 39914 2143 41909 211529;211530;211531;211532;211533 214988;214989;214990;214991;214992;214993;214994 214988 7 YWFSQPGEQGQWWR FHKQPPTYVRAQRYKYWFSQPGEQGQWWRR KYWFSQPGEQGQWWRRQWVEEFFPSVSLGD K Y W W R R 0 1 0 0 0 3 1 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 14 0 1853.8274 Q9BU23 Q9BU23 564 577 LMF2 Lipase maturation factor 2 yes yes 2 5.1659E-06 94.297 By MS/MS By matching 1 1 1.1162 1.0288 23.662 2 Median 0.8673 0.87029 NaN 1 0 Median 1.4366 1.2162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6025900 2880100 3145800 4610900 2344300 2266700 1415000 535800 879160 0 0 0 0 0 0 0 0 0 0 0 0 39915 3833 41910 211534;211535 214995;214996 214996 2 YWGSGLHDK KWIRTRKLKYLGVPKYWGSGLHDKNGKSYR YLGVPKYWGSGLHDKNGKSYRFMIMDRFGS K Y W D K N 0 0 0 1 0 0 0 2 1 0 1 1 0 0 0 1 0 1 1 0 0 0 9 0 1061.493 Q99986 Q99986 113 121 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 0.0015606 80.165 By MS/MS By MS/MS 1 1 0.99585 0.93338 3.5055 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.93145 0.91053 NaN 1 0 Median 1.0647 0.9568 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16519000 8334700 8184000 0 0 0 0 0 0 6883000 3700000 3183100 9635700 4634700 5001000 0 0 0 0 0 0 39916 3775 41911 211536;211537 214997;214998;214999;215000 214999 4 YWLGGPDPLDYVSMYR YPDQPNPLQVTAIVKYWLGGPDPLDYVSMY WLGGPDPLDYVSMYRNVGSPSANIPEHWHY K Y W Y R N 0 1 0 2 0 0 0 2 0 0 2 0 1 0 2 1 0 1 3 1 0 0 16 0 1930.8924 Q9UMX1 Q9UMX1 60 75 SUFU Suppressor of fused homolog yes yes 2 0.0062136 31.843 By MS/MS By matching 1 1 0.79435 0.76523 2.3078 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.74168 0.77782 NaN 1 0 Median 0.85077 0.75284 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 912710 572330 340380 0 0 0 0 0 0 854430 545860 308570 58282 26468 31813 0 0 0 0 0 0 39917 4336 41912 211538;211539 215001;215002 215001 2 YWPTADGR VKRLPPIVRGGAIDRYWPTADGRLVEYDID RGGAIDRYWPTADGRLVEYDIDEVVYDEDS R Y W G R L 1 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 8 0 964.44028 P52788;H7C2R7 P52788 123 130 SMS Spermine synthase yes no 2 0.01337 58.981 By MS/MS By MS/MS 1 2 1.1618 1.0138 19.979 3 Median 1.3159 1.3068 NaN 1 0 Median 1.0844 0.94509 9.9187 2 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23359000 10852000 12507000 7427300 2864000 4563300 15931000 7987800 7943400 0 0 0 0 0 0 0 0 0 0 0 0 39918 2459 41913 211540;211541;211542 215003;215004 215003 2 YWQQVIDMNDYQR LVYLCEALNLPEVARYWQQVIDMNDYQRRR ARYWQQVIDMNDYQRRRFASRIIDSLFNTV R Y W Q R R 0 1 1 2 0 3 0 0 0 1 0 0 1 0 0 0 0 1 2 1 0 0 13 0 1757.7832 O60701 O60701 299 311 UGDH UDP-glucose 6-dehydrogenase yes yes 2 0.0029978 62.303 By MS/MS 1 1.1107 1.106 NaN 1 Median 1.1107 1.106 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1934200 912800 1021400 1934200 912800 1021400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39919 1627 41914 211543 215005 215005 1 YWQSNMNNVK NDMWMLTADHGGYVKYWQSNMNNVKMFQAH GGYVKYWQSNMNNVKMFQAHKEAIREASFS K Y W V K M 0 0 3 0 0 1 0 0 0 0 0 1 1 0 0 1 0 1 1 1 0 0 10 0 1282.5765 Q9C0J8;C9J8B4 Q9C0J8 187 196 WDR33 pre-mRNA 3 end processing protein WDR33 yes no 2 0.0017935 62.546 By MS/MS 1 1.0755 1.1669 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0755 1.1669 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 4876500 2421800 2454700 0 0 0 0 0 0 4876500 2421800 2454700 0 0 0 0 0 0 0 0 0 39920 3907 41915 211544 215006;215007 215007 2 YWSQFDENIR RRQATDDASLLIVNRYWSQFDENIRIILKR LIVNRYWSQFDENIRIILKRYDLEQGLGDL R Y W I R I 0 1 1 1 0 1 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 10 0 1356.6099 Q5VTR2;C9J0A5;C9JXC9 Q5VTR2 96 105 RNF20 E3 ubiquitin-protein ligase BRE1A yes no 2 1.5419E-05 149.65 By MS/MS By MS/MS 1 1 1.335 1.2926 14.094 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.064 1.17 NaN 1 0 Median 1.6751 1.428 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12830000 6284000 6546100 0 0 0 0 0 0 11649000 5889100 5760000 1181000 394880 786160 0 0 0 0 0 0 39921 3112 41916 211545;211546 215008;215009;215010 215008 3 YWSQQIEESTTVVTTQSAEVGAAETTLTELR QYDELARKNREELDKYWSQQIEESTTVVTT SAEVGAAETTLTELRRTVQSLEIDLDSMRN K Y W L R R 3 1 0 0 0 3 5 1 0 1 2 0 0 0 0 3 7 1 1 3 0 0 31 0 3427.6631 P05783;F8VZY9 P05783 270 300 KRT18 Keratin, type I cytoskeletal 18 yes no 3 0.04197 10.393 By MS/MS 4 1.0736 1.0824 18.588 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0736 1.0824 18.588 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3467300 1637400 1829900 0 0 0 0 0 0 3467300 1637400 1829900 0 0 0 0 0 0 0 0 0 39922 1869 41917 211547;211548;211549;211550 215011 215011 1 YWTLTATGGVQSTASSK DRDTKKCAFRTHTGKYWTLTATGGVQSTAS TLTATGGVQSTASSKNASCYFDIEWRDRRI K Y W S K N 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 3 4 1 1 1 0 0 17 0 1756.8632 Q16658;C9JFC0;A0A0A0MSB2;C9JPH9 Q16658 314 330 FSCN1 Fascin yes no 2 1.248E-31 200.44 By MS/MS By matching By matching 2 1 1 1.1288 1.005 50.631 4 Median 1.6333 1.5482 67.674 2 0 Median 0.91336 0.80015 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.221 1.0527 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 46244000 22752000 23493000 44070000 21835000 22234000 981580 420830 560740 0 0 0 1193300 495590 697660 0 0 0 0 0 0 39923 2993 41918 211551;211552;211553;211554 215012;215013;215014;215015;215016 215013 5 YWYLGPLK LRWGSFRDAGVKVSKYWYLGPLKIKAAHFF AGVKVSKYWYLGPLKIKAAHFFSTLKEWPQ K Y W L K I 0 0 0 0 0 0 0 1 0 0 2 1 0 0 1 0 0 1 2 0 0 0 8 0 1038.5539 E9PC15;A0A3B3ITD0;Q53H12;E9PG39;A0A3B3ISY9;A0A3B3ISZ0;A0A0G2JLG5;A0A0G2JLD0 E9PC15 196 203 AGK Acylglycerol kinase, mitochondrial yes no 2 0.026977 41.502 By MS/MS 1 0.91036 0.87756 NaN 1 Median 0.91036 0.87756 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 2350300 1229400 1120900 2350300 1229400 1120900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39924 435 41919 211555 215017;215018 215018 2 YYADGEDAYAMK YSNTLNFQISEVEPKYYADGEDAYAMKRDL EPKYYADGEDAYAMKRDLTQMADELRRHLE K Y Y M K R 3 0 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 3 0 0 0 12 0 1395.5653 P41227;C9JN83;F8W808;A8MWP7;Q9BSU3;C9JW55;H0Y8T0 P41227 137 148 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 2 4.6895E-06 102.61 By matching By MS/MS By MS/MS By MS/MS 1 2 2 2 1.1079 0.9831 9.6595 7 Median 1.1689 1.0957 NaN 1 0 Median 1.1519 0.97202 11.48 2 0 Median 1.1007 1.0516 9.5296 2 0 Median 1.0926 0.90927 3.2226 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 37729000 18024000 19705000 7095600 3445600 3650000 11787000 6054400 5732900 11346000 5178300 6167700 7500500 3345600 4154900 0 0 0 0 0 0 39925 2298 41920 211556;211557;211558;211559;211560;211561;211562 215019;215020;215021;215022;215023;215024 215020 6 YYADGEDAYAMKR YSNTLNFQISEVEPKYYADGEDAYAMKRDL PKYYADGEDAYAMKRDLTQMADELRRHLEL K Y Y K R D 3 1 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 3 0 0 0 13 1 1551.6664 P41227;C9JN83;F8W808;A8MWP7;Q9BSU3;C9JW55;H0Y8T0 P41227 137 149 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 3 0.00013579 74.46 By MS/MS By matching By MS/MS 2 2 2 1.2606 1.2202 30.954 6 Median NaN NaN NaN 0 0 Median 0.99268 0.91894 24.916 2 0 Median 1.4541 1.4886 12.946 2 0 Median 1.1755 1.0744 39.74 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 9036200 3857500 5178600 0 0 0 2453700 1065500 1388200 2158200 818840 1339400 4424200 1973200 2451100 0 0 0 0 0 0 39926 2298 41921;41922 211563;211564;211565;211566;211567;211568 215025;215026 215026 1048 1 YYAFDEAFVR IFQIPPSRQALLIERYYAFDEAFVREVLGK LLIERYYAFDEAFVREVLGKKLSKGTKKDL R Y Y V R E 2 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 0 0 2 1 0 0 10 0 1279.5873 O43427;E9PJW6;E9PSD3 O43427 96 105 FIBP Acidic fibroblast growth factor intracellular-binding protein yes no 2 0.0010774 68.735 By MS/MS 1 0.93801 0.9339 NaN 1 Median 0.93801 0.9339 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3597300 1709900 1887400 3597300 1709900 1887400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39927 1572 41923 211569 215027;215028 215028 2 YYAFPQMITPLVTK IRTEVMALVPPADCRYYAFPQMITPLVTKG RYYAFPQMITPLVTKG______________ R Y Y T K G 1 0 0 0 0 1 0 0 0 1 1 1 1 1 2 0 2 0 2 1 0 0 14 0 1670.8742 Q14353;A0A1W2PR36 Q14353 222 235 GAMT Guanidinoacetate N-methyltransferase yes no 2 0.0071975 51.927 By MS/MS 1 0.64161 0.59862 NaN 1 Median 0.64161 0.59862 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 11037000 6656700 4380200 11037000 6656700 4380200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39928 2876 41924 211570 215029 215029 1 YYAFPQMITPLVTKG IRTEVMALVPPADCRYYAFPQMITPLVTKG YYAFPQMITPLVTKG_______________ R Y Y K G - 1 0 0 0 0 1 0 1 0 1 1 1 1 1 2 0 2 0 2 1 0 0 15 1 1727.8957 Q14353;A0A1W2PR36 Q14353 222 236 GAMT Guanidinoacetate N-methyltransferase yes no 2 0.0094492 33.886 By MS/MS By matching 1 1 0.86228 0.77554 39.865 2 Median 0.62855 0.58504 NaN 1 0 Median 1.1829 1.0281 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7409800 4487100 2922700 7296500 4441600 2854800 113310 45426 67879 0 0 0 0 0 0 0 0 0 0 0 0 39929 2876 41925 211571;211572 215030;215031 215031 2 YYAGWADKYHGK ISYLVDLDMVLKCLRYYAGWADKYHGKTIP CLRYYAGWADKYHGKTIPIDGDFFSYTRHE R Y Y G K T 2 0 0 1 0 0 0 2 1 0 0 2 0 0 0 0 0 1 3 0 0 0 12 1 1457.6728 P05091;F8VP50 P05091 148 159 ALDH2 Aldehyde dehydrogenase, mitochondrial yes no 3 0.0034925 36.847 By MS/MS By matching 1 1 1.04 1.0766 22.759 2 Median 0.95443 0.91655 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.1332 1.2646 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6759800 3797200 2962500 4878400 2834600 2043800 0 0 0 1881300 962610 918730 0 0 0 0 0 0 0 0 0 39930 1860 41926 211573;211574 215032;215033 215032 2 YYANHTAQIEIVR LKPGSDPDEGDEALKYYANHTAQIEIVRHD LKYYANHTAQIEIVRHDRTMEQIVFPVPNI K Y Y V R H 2 1 1 0 0 1 1 0 1 2 0 0 0 0 0 0 1 0 2 1 0 0 13 0 1576.7998 Q14571 Q14571 2141 2153 ITPR2 Inositol 1,4,5-trisphosphate receptor type 2 yes yes 3 6.764E-05 79.646 By MS/MS 1 1.4318 1.1629 NaN 1 Median NaN NaN NaN 0 0 Median 1.4318 1.1629 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10415000 4757000 5658200 0 0 0 10415000 4757000 5658200 0 0 0 0 0 0 0 0 0 0 0 0 39931 2882 41927 211575 215034 215034 1 YYASEIAGQTTSK LEAGKPFIKEASMAKYYASEIAGQTTSKCI AKYYASEIAGQTTSKCIEWMGGVGYTKDYP K Y Y S K C 2 0 0 0 0 1 1 1 0 1 0 1 0 0 0 2 2 0 2 0 0 0 13 0 1417.6725 P45954 P45954 372 384 ACADSB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial yes yes 2 4.9343E-05 102.95 By MS/MS By MS/MS 1 2 1.2788 1.0929 19.352 3 Median 0.92104 0.85224 NaN 1 1 Median 1.3665 1.1677 9.3646 2 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 25745000 12710000 13035000 13441000 7487400 5953500 12304000 5222800 7081200 0 0 0 0 0 0 0 0 0 0 0 0 39932 2330 41928 211576;211577;211578 215035;215036;215037 215035 3 YYAVNFPMR PGTGDLRDIGAGKGKYYAVNFPMRDGIDDE GAGKGKYYAVNFPMRDGIDDESYGQIFKPI K Y Y M R D 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 9 0 1159.5485 Q92769 Q92769 222 230 HDAC2 Histone deacetylase 2 yes yes 2 0.00047342 122.78 By matching By MS/MS By MS/MS By matching By matching 1 4 2 1 1 0.92417 0.91558 15.379 9 Median NaN NaN NaN 0 0 Median 1.019 0.87936 NaN 1 0 Median 0.92215 0.9234 20.049 4 0 Median 1.1257 0.962 0.12817 2 0 Median 0.84687 0.85271 NaN 1 0 Median 0.81739 0.72057 NaN 1 0 Median 40665000 22212000 18453000 0 0 0 1221400 417810 803550 35577000 19817000 15761000 1954900 938420 1016500 1654800 894110 760690 256580 145100 111490 39933 3555 41929;41930 211579;211580;211581;211582;211583;211584;211585;211586;211587 215038;215039;215040;215041;215042;215043;215044 215040 1771 7 YYAVNYPLR PGTGDLRDIGAGKGKYYAVNYPLRDGIDDE GAGKGKYYAVNYPLRDGIDDESYEAIFKPV K Y Y L R D 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 3 1 0 0 9 0 1157.5869 Q13547;Q5TEE2 Q13547 221 229 HDAC1 Histone deacetylase 1 yes no 2 6.8858E-18 155.19 By MS/MS By MS/MS By matching 2 3 1 1.0122 0.91788 17.748 4 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.87272 0.85748 NaN 1 1 Median 1.2216 1.0349 7.3366 2 1 Median 0.72003 0.72322 NaN 1 0 Median NaN NaN NaN 0 0 Median 76308000 39224000 37085000 0 0 0 0 0 0 61809000 31371000 30439000 7410900 3346600 4064300 7087800 4506200 2581700 0 0 0 39934 2823 41931 211588;211589;211590;211591;211592;211593 215045;215046;215047;215048;215049;215050 215045 6 YYDDTYPSVK AILILDNDGDRLFAKYYDDTYPSVKEQKAF RLFAKYYDDTYPSVKEQKAFEKNIFNKTHR K Y Y V K E 0 0 0 2 0 0 0 0 0 0 0 1 0 0 1 1 1 0 3 1 0 0 10 0 1249.5503 F8VVA7;P61923;F8VXB1;F8VUC5;F8W156;F8VYZ4;F8VXR1 F8VVA7 30 39 COPZ1 Coatomer subunit zeta-1 yes no 2 0.00079825 71.223 By MS/MS By MS/MS By matching By matching 1 1 1 1 1.1176 0.95221 16.057 4 Median 0.94921 0.89354 NaN 1 0 Median 1.0155 0.8696 NaN 1 0 Median 1.2955 1.2366 NaN 1 0 Median 1.2299 1.0147 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 39128000 18690000 20438000 25506000 12408000 13098000 9719800 4784600 4935300 3114900 1185400 1929500 786750 312250 474500 0 0 0 0 0 0 39935 1067 41932 211594;211595;211596;211597 215051;215052;215053;215054;215055 215054 5 YYDSRPGGYGYGYGR SYSRGGGDQGYGSGRYYDSRPGGYGYGYGR YYDSRPGGYGYGYGRSRDYNGRNQGGYDRY R Y Y G R S 0 2 0 1 0 0 0 5 0 0 0 0 0 0 1 1 0 0 5 0 0 0 15 1 1729.7485 P98179 P98179 117 131 RBM3 RNA-binding protein 3 yes yes 2;3 1.2627E-10 164.64 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 4 4 5 4 6 8 1.2754 1.2442 15.877 31 Median 1.1479 1.2032 21.835 4 0 Median 1.5202 1.347 8.9711 4 0 Median 1.1043 1.1931 9.6183 5 1 Median 1.4392 1.2887 8.1585 4 0 Median 1.1148 1.221 8.3837 6 0 Median 1.361 1.2129 22.739 8 0 Median 1194500000 539000000 655550000 170060000 79164000 90898000 102890000 40354000 62534000 453590000 210230000 243360000 89540000 37045000 52495000 324170000 150290000 173880000 54302000 21915000 32386000 39936 2672 41933 211598;211599;211600;211601;211602;211603;211604;211605;211606;211607;211608;211609;211610;211611;211612;211613;211614;211615;211616;211617;211618;211619;211620;211621;211622;211623;211624;211625;211626;211627;211628 215056;215057;215058;215059;215060;215061;215062;215063;215064;215065;215066;215067;215068;215069;215070;215071;215072;215073;215074;215075;215076;215077;215078;215079;215080;215081;215082;215083;215084;215085;215086;215087;215088;215089;215090;215091;215092;215093;215094;215095;215096;215097;215098;215099;215100;215101;215102;215103 215064 48 YYEAADTVTQFDNVR ______________________________ YYEAADTVTQFDNVRLWLGKNYKKYIQAEP K Y Y V R L 2 1 1 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 2 2 0 0 15 0 1790.8111 Q8TAQ2;F8VXC8;F8VZW6 Q8TAQ2 14 28 SMARCC2 SWI/SNF complex subunit SMARCC2 yes no 2;3 1.381E-58 233.54 By MS/MS By MS/MS By MS/MS By matching 5 5 2 1 0.93462 0.91266 11.929 13 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.81707 0.85497 10.9 5 1 Median 1.2047 1.0612 6.6492 5 2 Median 0.82709 0.8558 0.51602 2 0 Median 1.0926 0.91266 NaN 1 0 Median 150820000 77127000 73695000 0 0 0 0 0 0 123600000 63574000 60031000 11804000 5274200 6529600 14156000 7690700 6465300 1257900 588720 669130 39937 3455 41934 211629;211630;211631;211632;211633;211634;211635;211636;211637;211638;211639;211640;211641 215104;215105;215106;215107;215108;215109;215110;215111;215112;215113;215114;215115;215116;215117;215118 215105 15 YYEDNKQFFGR AKVGTLVGEDKYGNKYYEDNKQFFGRHRWV YGNKYYEDNKQFFGRHRWVVYTTEMNGKNT K Y Y G R H 0 1 1 1 0 1 1 1 0 0 0 1 0 2 0 0 0 0 2 0 0 0 11 1 1465.6626 Q9UI09;F8VRD8 Q9UI09 48 58 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes no 2;3 0.00055705 109.21 By MS/MS By matching By MS/MS 2 1 1 0.72697 0.73646 44.312 4 Median 0.59852 0.59004 23.023 2 1 Median 1.6391 1.4462 NaN 1 0 Median 0.75025 0.78112 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 34625000 20208000 14417000 27412000 16241000 11171000 2684900 1112500 1572400 4527700 2854600 1673200 0 0 0 0 0 0 0 0 0 39938 4286 41935 211642;211643;211644;211645 215119;215120;215121 215121 3 YYEGYYAAGPGYGGR LQPEPGYGYAPNQGRYYEGYYAAGPGYGGR YYEGYYAAGPGYGGRNDSDPTYGQQGHPNT R Y Y G R N 2 1 0 0 0 0 1 5 0 0 0 0 0 0 1 0 0 0 5 0 0 0 15 0 1642.7052 C9JXK9;C9JUT4;A0A087WZF1;Q93052 C9JXK9 133 147 LPP Lipoma-preferred partner yes no 2 1.6198E-09 104.52 By MS/MS By matching By MS/MS 1 1 1 0.8275 0.78637 9.1131 3 Median 0.76732 0.73632 NaN 1 0 Median 0.90928 0.78637 NaN 1 0 Median 0.8275 0.88162 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12245000 6736800 5508600 7477800 4273200 3204600 1928200 910460 1017800 2839400 1553100 1286300 0 0 0 0 0 0 0 0 0 39939 94 41936 211646;211647;211648 215122;215123;215124 215122 3 YYETGSIRPR NQNVSNGCVSKILGRYYETGSIRPRAIGGS KILGRYYETGSIRPRAIGGSKPRVATPEVV R Y Y P R A 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 1 1 0 2 0 0 0 10 1 1240.62 A0A1W2PQW3;B1B1J0;A0A1W2PRS6;A0A1W2PQL7;A0A1W2PRA4;A0A1W2PQM7;A0A1W2PS91;D1KF47;A0A1W2PSA8;A0A1W2PPN2;E9PKM0;A0A1W2PQA8;A0A1W2PQG7;P26367 A0A1W2PQW3 74 83 PAX6 Paired box protein Pax-6 yes no 3 0.0013761 53.683 By MS/MS By MS/MS 1 1 0.7027 0.70618 7.4906 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.61858 0.66975 NaN 1 0 Median 0.79826 0.7446 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3676700 2029100 1647600 0 0 0 0 0 0 2328000 1372400 955540 1348800 656660 692090 0 0 0 0 0 0 39940 338 41937 211649;211650 215125;215126;215127 215126 3 YYETPEEEREK NTQKGIEMTMAQWTRYYETPEEEREKLYNV QWTRYYETPEEEREKLYNVISLEFSHTRLE R Y Y E K L 0 1 0 0 0 0 5 0 0 0 0 1 0 0 1 0 1 0 2 0 0 0 11 1 1471.6467 I3VM54;Q9Y2K7 I3VM54 112 122 KDM2A Lysine-specific demethylase 2A yes no 3 0.011111 29.807 By MS/MS 1 0.82235 0.94074 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.82235 0.94074 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 864880 429540 435340 0 0 0 0 0 0 864880 429540 435340 0 0 0 0 0 0 0 0 0 39941 1296 41938 211651 215128 215128 1 YYEVLGAAATTDYNNNHEGR ELQRLESRLQPFLQRYYEVLGAAATTDYNN GAAATTDYNNNHEGREEDQRLINLVGESLR R Y Y G R E 3 1 3 1 0 0 2 2 1 0 1 0 0 0 0 0 2 0 3 1 0 0 20 0 2257.0036 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2 P46379 297 316 BAG6;BAT3 Large proline-rich protein BAG6 yes no 3 0.057715 8.089 By matching By matching By matching By MS/MS 1 1 2 2 1.1213 0.97785 11.66 6 Median 1.1237 1.0723 NaN 1 0 Median 1.0336 0.89952 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.15 0.97785 1.7796 2 0 Median 1.0456 1.0785 19.993 2 0 Median NaN NaN NaN 0 0 Median 32169000 15302000 16866000 9687100 4334800 5352200 892980 487890 405090 0 0 0 2099800 955870 1143900 19489000 9523900 9965000 0 0 0 39942 8 41939 211652;211653;211654;211655;211656;211657 215129 215129 1 YYEVLGAAATTDYNNNHEGREEDQR ELQRLESRLQPFLQRYYEVLGAAATTDYNN TDYNNNHEGREEDQRLINLVGESLRLLGNT R Y Y Q R L 3 2 3 2 0 1 4 2 1 0 1 0 0 0 0 0 2 0 3 1 0 0 25 1 2914.2754 P46379;A0A0G2JK23;A0A024RCR6;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2 P46379 297 321 BAG6;BAT3 Large proline-rich protein BAG6 yes no 4 3.7792E-06 38.26 By MS/MS By matching 1 1 1.1549 1.2045 1.4293 2 Median 1.0732 1.1923 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.2428 1.2167 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8480500 3342800 5137700 7195300 2891900 4303400 0 0 0 0 0 0 1285200 450850 834330 0 0 0 0 0 0 39943 8 41940 211658;211659 215130;215131 215130 2 YYFEGIK IPAPEEERTRQGWQRYYFEGIKQTFGYGAR RTRQGWQRYYFEGIKQTFGYGARLF_____ R Y Y I K Q 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 7 0 918.44872 O95433;G3V438;H0YJU2 O95433 322 328 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes no 2 0.018329 63.148 By MS/MS By matching By matching By matching By matching By matching 1 1 1 1 1 2 1.1492 0.96677 22.392 7 Median 1.1492 1.0613 NaN 1 0 Median 1.0524 0.8968 NaN 1 0 Median 1.3869 1.4911 NaN 1 0 Median 1.0198 0.86801 NaN 1 0 Median 0.75458 0.78428 NaN 1 0 Median 1.2886 1.0983 18.038 2 0 Median 37391000 18017000 19373000 18588000 9057800 9530000 13213000 6440200 6772500 3542800 1481600 2061100 238740 128900 109850 1017400 593540 423820 791370 315210 476160 39944 1773 41941 211660;211661;211662;211663;211664;211665;211666 215132;215133 215132 2 YYFSHDTD PDIDGDEDLPGPPVRYYFSHDTD_______ LPGPPVRYYFSHDTD_______________ R Y Y T D - 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 1 1 0 2 0 0 0 8 0 1046.3981 A0AVT1 A0AVT1 1045 1052 UBA6 Ubiquitin-like modifier-activating enzyme 6 yes yes 2 0.0087342 79.454 By MS/MS By MS/MS 1 1 NaN NaN NaN 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10834000 0 0 6954000 0 0 3880000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39945 489 41942 211667;211668 215134;215135 215135 2 YYGESLPFGDNSFK VAEELKAMLVFAEHRYYGESLPFGDNSFKD RYYGESLPFGDNSFKDSRHLNFLTSEQALA R Y Y F K D 0 0 1 1 0 0 1 2 0 0 1 1 0 2 1 2 0 0 2 0 0 0 14 0 1622.7253 P42785;E9PQB5;E9PL85;E9PQN3;E9PKN6;E9PIG4;E9PL49;E9PLY4;E9PNF7;E9PNJ1 P42785 124 137 PRCP Lysosomal Pro-X carboxypeptidase yes no 2 0.0071975 51.927 By MS/MS By matching By MS/MS By matching 1 1 1 1 1.1782 1.0321 20.858 4 Median 1.4138 1.3503 NaN 1 1 Median 1.324 1.1548 NaN 1 0 Median 0.83146 0.8565 NaN 1 0 Median 1.0484 0.9225 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6796100 2947900 3848200 3266300 1384500 1881800 1210000 553220 656790 2116100 927660 1188500 203680 82531 121150 0 0 0 0 0 0 39946 2318 41943 211669;211670;211671;211672 215136;215137 215136 2 YYGGGSEGGR MVKMAAAGGGGGGGRYYGGGSEGGRAPKRL GGGGRYYGGGSEGGRAPKRLKTDNAGDQHG R Y Y G R A 0 1 0 0 0 0 1 5 0 0 0 0 0 0 0 1 0 0 2 0 0 0 10 0 1001.4203 P14866 P14866 47 56 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 0.011457 42.599 By MS/MS By MS/MS By matching By MS/MS By MS/MS 1 2 1 5 4 1.0819 1.0747 8.378 13 Median NaN NaN NaN 0 0 Median 1.2988 1.1266 NaN 1 0 Median 1.0244 1.0655 1.2086 2 0 Median 1.2756 1.0897 NaN 1 0 Median 0.98397 0.99295 9.6139 5 0 Median 1.2774 1.113 10.837 4 0 Median 15282000 7305300 7976900 0 0 0 2840200 1140700 1699400 3260400 1560700 1699600 296710 141190 155520 7536300 3887900 3648400 1348800 574810 773950 39947 2011 41944 211673;211674;211675;211676;211677;211678;211679;211680;211681;211682;211683;211684;211685 215138;215139;215140;215141;215142;215143;215144 215140 7 YYGINDPVADK TDPDDPLADQNIKDRYYGINDPVADKLLKR IKDRYYGINDPVADKLLKRASTMPRLDPPE R Y Y D K L 1 0 1 2 0 0 0 1 0 1 0 1 0 0 1 0 0 0 2 1 0 0 11 0 1253.5928 Q9NW64 Q9NW64 202 212 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 0.0021541 55.064 By matching By MS/MS By MS/MS By matching 1 1 2 1 0.92325 0.90147 22.536 5 Median NaN NaN NaN 0 0 Median 0.92325 0.81438 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5801 1.4147 NaN 1 1 Median 0.89258 0.88071 8.337 2 0 Median 1.0708 0.90147 NaN 1 0 Median 25735000 12512000 13224000 0 0 0 727050 316820 410230 0 0 0 4518100 1550300 2967800 18479000 9663200 8815600 2011500 981230 1030200 39948 4146 41945 211686;211687;211688;211689;211690 215145;215146;215147 215145 3 YYGLQILENVIK RVDTILEFSQNMNTKYYGLQILENVIKTRW NTKYYGLQILENVIKTRWKILPRNQCEGIK K Y Y I K T 0 0 1 0 0 1 1 1 0 2 2 1 0 0 0 0 0 0 2 1 0 0 12 0 1451.8024 O14980;C9JKM9;C9J673;C9IZS4;C9JQ02;C9JV99;H7BZC5 O14980 77 88 XPO1 Exportin-1 yes no 2 4.6895E-06 102.61 By MS/MS By matching By matching By MS/MS By MS/MS 4 4 1 3 5 1.2415 1.0511 29.772 17 Median 0.89793 0.87276 10.466 4 0 Median 1.2294 1.0735 14.902 4 0 Median 0.98513 1.0677 NaN 1 0 Median NaN NaN NaN 0 0 Median 2.2235 2.2953 22.392 3 0 Plateau 1.2651 1.0474 7.7662 5 0 Median 34657000 15703000 18954000 19578000 9291500 10286000 6326800 2805500 3521400 265520 136330 129190 0 0 0 2844500 796690 2047800 5642000 2673000 2969000 39949 1510 41946 211691;211692;211693;211694;211695;211696;211697;211698;211699;211700;211701;211702;211703;211704;211705;211706;211707 215148;215149;215150;215151;215152 215149 5 YYGQNGQQILSASQDGTLQSFSTVHEK LRFRMGHSAPLTNIRYYGQNGQQILSASQD SQDGTLQSFSTVHEKFNKSLGHGLINKKRV R Y Y E K F 1 0 1 1 0 5 1 3 1 1 2 1 0 1 0 4 2 0 2 1 0 0 27 0 2985.4104 A0A0A0MTB8;Q8NI36 A0A0A0MTB8 331 357 WDR36 WD repeat-containing protein 36 yes no 3 0.011405 17.341 By MS/MS By matching 2 1 1.2365 1.1515 13.941 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0662 1.1643 19.694 2 0 Median 1.2954 1.1515 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 7863300 3862200 4001100 0 0 0 0 0 0 7667400 3774800 3892600 195930 87402 108520 0 0 0 0 0 0 39950 188 41947 211708;211709;211710 215153 215153 1 YYGYTGAFR EKGTGKECVPNSNERYYGYTGAFRCLVEKG PNSNERYYGYTGAFRCLVEKGDVAFVKDQT R Y Y F R C 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 3 0 0 0 9 0 1096.4978 CON__Q0IIK2;CON__Q29443;E7EQB2;E7ER44;P02788 CON__Q0IIK2 540 548 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes no 2 5.3568E-05 122.13 By MS/MS 1 0.0055134 0.0052122 NaN 1 Median 0.0055134 0.0052122 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 42863000 42542000 321130 42863000 42542000 321130 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 + 39951 769 41948 211711 215154 215154 1 YYHEEELESALR TTSAGAEAAEGQFDRYYHEEELESALREAA FDRYYHEEELESALREAAAAGLPGLARLFS R Y Y L R E 1 1 0 0 0 0 4 0 1 0 2 0 0 0 0 1 0 0 2 0 0 0 12 0 1537.7049 O75976 O75976 58 69 CPD Carboxypeptidase D yes yes 2;3 0.00016994 93.111 By MS/MS By MS/MS 2 2 1.1934 1.0722 14.113 4 Median 1.0109 0.95213 17.7 2 1 Median 1.3128 1.1135 6.2454 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 23944000 10995000 12949000 16448000 7912800 8535400 7496000 3082000 4414000 0 0 0 0 0 0 0 0 0 0 0 0 39952 1714 41949 211712;211713;211714;211715 215155;215156;215157;215158;215159;215160 215155 6 YYIAASYVK LMQKCRNKVMKNYGRYYIAASYVKYLESAG MKNYGRYYIAASYVKYLESAGARVVPVRLD R Y Y V K Y 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 3 1 0 0 9 0 1076.5542 Q92820 Q92820 54 62 GGH Gamma-glutamyl hydrolase yes yes 2 0.0028118 81.548 By MS/MS By matching By matching By MS/MS 4 2 2 1 0.94806 0.98174 29.856 8 Median 0.94438 0.87506 18.518 3 1 Median 1.05 0.96751 36.924 2 0 Median 0.89755 0.98174 6.387 2 0 Median 2.1993 1.8641 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 94652000 49966000 44685000 70214000 38166000 32049000 15904000 8614400 7289100 4769800 2039800 2730000 3764100 1146500 2617600 0 0 0 0 0 0 39953 3560 41950 211716;211717;211718;211719;211720;211721;211722;211723;211724 215161;215162;215163;215164;215165;215166 215166 6 YYIDADLLR IRMQNHFGAVRSEERYYIDADLLREIKQHL VRSEERYYIDADLLREIKQHLKQQQEGLSH R Y Y L R E 1 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 0 0 2 0 0 0 9 0 1140.5815 Q7Z3B4 Q7Z3B4 453 461 NUP54 Nucleoporin p54 yes yes 2 0.00040055 133.12 By MS/MS By matching By matching 1 1 1 1.5133 1.2955 21.551 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0025 0.99387 NaN 1 0 Median 1.7507 1.5231 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.5133 1.2955 NaN 1 0 Median 27480000 13309000 14171000 0 0 0 0 0 0 26225000 12863000 13362000 133270 57383 75883 0 0 0 1121200 388520 732700 39954 3239 41951 211725;211726;211727 215167;215168 215168 2 YYITIIDAPGHR GITIDISLWKFETTKYYITIIDAPGHRDFI TTKYYITIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 3 0 0 0 0 1 0 1 0 2 0 0 0 12 0 1417.7354 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 A0A2U3TZH3 85 96 EEF1A2 Elongation factor 1-alpha 2 yes no 2;3 1.342E-06 103.55 By MS/MS By matching By MS/MS By MS/MS 3 2 6 4 1.3475 1.3118 16.263 15 Median 1.2542 1.2048 17.754 3 0 Median 1.6162 1.3894 1.726 2 0 Median 1.1621 1.1321 21.256 6 0 Median 1.5289 1.3152 9.8627 4 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 167790000 72585000 95209000 22278000 9586600 12692000 4824600 1842600 2982000 82841000 38732000 44109000 57851000 22425000 35426000 0 0 0 0 0 0 39955 404 41952 211728;211729;211730;211731;211732;211733;211734;211735;211736;211737;211738;211739;211740;211741;211742 215169;215170;215171;215172;215173;215174;215175;215176;215177;215178;215179;215180;215181;215182;215183;215184 215174 16 YYMLNIEAAK RVSSDEDLKLTELLRYYMLNIEAAKDLLYR TELLRYYMLNIEAAKDLLYRRTKALIDYEN R Y Y A K D 2 0 1 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 2 0 0 0 10 0 1214.6005 Q9Y5X3;Q5QPE5;A0A087WUY5 Q9Y5X3 297 306 SNX5 Sorting nexin-5 yes no 2 0.028205 48.283 By MS/MS 1 1.0222 0.96372 NaN 1 Median 1.0222 0.96372 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5373000 2774000 2598900 5373000 2774000 2598900 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39956 4471 41953 211743 215185 215185 1 YYMNQVEETR RGLPFDGRIRAWDMRYYMNQVEETRYCVDQ AWDMRYYMNQVEETRYCVDQNLLKEYFPVQ R Y Y T R Y 0 1 1 0 0 1 2 0 0 0 0 0 1 0 0 0 1 0 2 1 0 0 10 0 1331.5816 P52888;K7EP46 P52888 339 348 THOP1 Thimet oligopeptidase yes no 2 1.4897E-05 149.94 By MS/MS By MS/MS 1 1 1.1005 0.99619 1.4404 2 Median 1.0638 1.0064 NaN 1 0 Median 1.1384 0.98609 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 18473000 9241700 9230800 14057000 7196600 6860000 4415900 2045100 2370800 0 0 0 0 0 0 0 0 0 0 0 0 39957 2460 41954 211744;211745 215186;215187;215188 215186 3 YYNDYGDIIK VEMNTAADIFKQYMKYYNDYGDIIKETMSK KQYMKYYNDYGDIIKETMSKTRQIDKIQCA K Y Y I K E 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 0 0 0 3 0 0 0 10 0 1262.5819 Q8N3U4 Q8N3U4 892 901 STAG2 Cohesin subunit SA-2 no no 2 0.0095388 45.081 By matching By MS/MS By matching 1 1 1 1.4365 1.2337 40.261 3 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.67213 0.7172 NaN 1 0 Median 1.4365 1.2337 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.822 1.5749 NaN 1 0 Median 19573000 10970000 8602600 0 0 0 0 0 0 15828000 9378600 6449000 3461400 1469700 1991700 0 0 0 283890 122050 161840 39958 3369 41955 211746;211747;211748 215189 215189 1 YYNKVPVEK EYVVEFDFLGKDSIRYYNKVPVEKRVFKNL GKDSIRYYNKVPVEKRVFKNLQLFMENKQP R Y Y E K R 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 2 2 0 0 9 1 1138.6023 P11387 P11387 537 545 TOP1 DNA topoisomerase 1 yes yes 2 0.0095458 75.109 By MS/MS 2 1.0638 1.2247 14.941 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0638 1.2247 14.941 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10777000 5328600 5448400 0 0 0 0 0 0 10777000 5328600 5448400 0 0 0 0 0 0 0 0 0 39959 1962 41956 211749;211750 215190 215190 1 YYNKYINVK SPSGIFGAFQRGYYRYYNKYINVKKGSISG QRGYYRYYNKYINVKKGSISGITMVLACYV R Y Y V K K 0 0 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 3 1 0 0 9 1 1203.6288 P56134;C9JU26 P56134 51 59 ATP5J2 ATP synthase subunit f, mitochondrial yes no 2 0.062959 80.098 By MS/MS 2 0.67863 0.61577 45.956 2 Median NaN NaN NaN 0 0 Median 0.67863 0.61577 45.956 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8297600 4496800 3800800 0 0 0 8297600 4496800 3800800 0 0 0 0 0 0 0 0 0 0 0 0 39960 2506 41957 211751;211752 215191 215191 0 YYPTEDVPR KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG LRKMPRYYPTEDVPRKLLSHGKKPFSQHVR R Y Y P R K 0 1 0 1 0 0 1 0 0 0 0 0 0 0 2 0 1 0 2 1 0 0 9 0 1138.5295 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 115 123 RPL6 60S ribosomal protein L6 yes no 2 0.00045891 124.83 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 2 6 2 3 2 5 0.89003 0.80718 28.32 20 Median 0.81225 0.80368 1.076 2 1 Median 0.89003 0.75525 43.102 6 3 Median 0.8348 0.85671 9.9476 2 0 Median 0.95712 0.83413 23.257 3 1 Median 0.83428 0.83318 4.9475 2 0 Median 1.0761 0.83825 19.606 5 0 Median 380970000 201330000 179640000 126290000 67955000 58332000 108690000 56756000 51938000 30246000 16165000 14081000 17514000 8604700 8909500 71057000 38147000 32909000 27169000 13703000 13467000 39961 2703 41958 211753;211754;211755;211756;211757;211758;211759;211760;211761;211762;211763;211764;211765;211766;211767;211768;211769;211770;211771;211772 215192;215193;215194;215195;215196;215197;215198;215199;215200;215201;215202;215203;215204;215205;215206;215207;215208;215209;215210;215211;215212;215213;215214;215215;215216;215217;215218;215219;215220;215221;215222;215223 215207 32 YYPTEDVPRK KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG RKMPRYYPTEDVPRKLLSHGKKPFSQHVRK R Y Y R K L 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 1 0 2 1 0 0 10 1 1266.6245 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 115 124 RPL6 60S ribosomal protein L6 yes no 2;3 0.0010872 58.676 By MS/MS By MS/MS By MS/MS By matching By MS/MS By MS/MS 4 2 1 1 2 2 0.82211 0.81667 17.588 12 Median 0.74384 0.79251 14.937 4 0 Median 0.90071 0.84342 5.1249 2 1 Median 1.0113 1.115 NaN 1 0 Median 1.2312 1.0828 NaN 1 0 Median 0.75904 0.82098 15.51 2 0 Median 0.84079 0.76389 16.518 2 0 Median 27260000 14792000 12468000 11478000 6478000 5000400 5066200 2426000 2640200 1317800 706900 610880 866010 370950 495060 6518300 3754300 2764000 2013300 1055900 957380 39962 2703 41959 211773;211774;211775;211776;211777;211778;211779;211780;211781;211782;211783;211784 215224;215225;215226;215227;215228;215229;215230;215231;215232;215233;215234 215226 11 YYPYQSFQTPQHPSFLFQDKR VKYSSDYFQAPSDYRYYPYQSFQTPQHPSF FQTPQHPSFLFQDKRVSWSLVYLPTIQSCW R Y Y K R V 0 1 0 1 0 4 0 0 1 0 1 1 0 3 3 2 1 0 3 0 0 0 21 1 2676.2761 Q08380 Q08380 455 475 LGALS3BP Galectin-3-binding protein yes yes 3;4 0.00027445 29.126 By MS/MS By matching 2 1 0.74446 0.80603 32.962 3 Plateau 0.58195 0.5952 5.6099 2 0 Median NaN NaN NaN 0 0 Median 0.91725 1.0491 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 8693400 5111400 3582000 5138000 3061900 2076100 0 0 0 3555400 2049500 1505900 0 0 0 0 0 0 0 0 0 39963 2739 41960 211785;211786;211787 215235;215236 215235 2 YYQADQLVQR LRQHVIDVQILIDGKYYQADQLVQRVAKLR LIDGKYYQADQLVQRVAKLRDEIMALRNEC K Y Y Q R V 1 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 10 0 1282.6306 E9PHM6;F6QMI7;Q03001;F8W9J4;A0A494C1D7;E7ETB9;Q6P0N6 E9PHM6 456 465 DST Dystonin no no 2 0.0034273 69.954 By MS/MS 1 1.0017 1.0121 NaN 1 Median 1.0017 1.0121 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3216100 1482300 1733800 3216100 1482300 1733800 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39964 934 41961 211788 215237 215237 1 YYQTIGNHASYYK GVTSVHSRFYDLSSKYYQTIGNHASYYKDA SKYYQTIGNHASYYKDALRFLGCVDIKDLP K Y Y Y K D 1 0 1 0 0 1 0 1 1 1 0 1 0 0 0 1 1 0 4 0 0 0 13 0 1606.7416 Q9UNM6;A0A087WUL9;J3KNQ3;E9PL38;H0YD73 Q9UNM6 162 174 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes no 2;3 1.0247E-05 123.67 By MS/MS By MS/MS By MS/MS By MS/MS By matching By matching 2 2 4 3 2 1 1.2136 1.0928 17.949 13 Median 1.2239 1.1236 0.21597 2 0 Median 1.2257 1.0444 6.3996 2 0 Median 1.0096 1.0964 21.192 4 0 Median 1.3442 1.1393 19.946 2 1 Median 0.72518 0.80247 5.477 2 0 Median 1.5523 1.2734 NaN 1 0 Median 236340000 107390000 128950000 109950000 48652000 61298000 31184000 13274000 17910000 68554000 34303000 34252000 8108500 3426400 4682100 15802000 6858400 8943100 2738700 877250 1861500 39965 4345 41962 211789;211790;211791;211792;211793;211794;211795;211796;211797;211798;211799;211800;211801;211802 215238;215239;215240;215241;215242;215243;215244;215245;215246;215247;215248;215249;215250 215239 13 YYSEEAEVDLR AEGKRNRSDTEQEGKYYSEEAEVDLRDPGR QEGKYYSEEAEVDLRDPGRDYELYKYTCQE K Y Y L R D 1 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 2 1 0 0 11 0 1372.6147 Q13769;F8WCP5;C9JXG5;H7C441;C9JXU6;F5GZF3;C9JCL9 Q13769 36 46 THOC5 THO complex subunit 5 homolog yes no 2 0.00077434 62.823 By matching By MS/MS 1 1 1.0758 1.028 18.572 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1062 1.1722 NaN 1 0 Median 1.0462 0.90146 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 5394400 2728700 2665700 0 0 0 0 0 0 3254100 1765100 1489000 2140300 963630 1176700 0 0 0 0 0 0 39966 2837 41963 211803;211804 215251;215252 215252 2 YYSEEAEVDLRDPGR AEGKRNRSDTEQEGKYYSEEAEVDLRDPGR YYSEEAEVDLRDPGRDYELYKYTCQELQRL K Y Y G R D 1 2 0 2 0 0 3 1 0 0 1 0 0 0 1 1 0 0 2 1 0 0 15 1 1797.817 Q13769;F8WCP5;C9JXG5;H7C441;C9JXU6;F5GZF3;C9JCL9 Q13769 36 50 THOC5 THO complex subunit 5 homolog yes no 3 0.030172 18.457 By MS/MS By MS/MS 1 1 1.1724 1.1658 15.296 2 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.1641 1.299 NaN 1 0 Median 1.1808 1.0463 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 6994800 3068300 3926500 0 0 0 0 0 0 5774100 2575400 3198700 1220700 492910 727770 0 0 0 0 0 0 39967 2837 41964 211805;211806 215253;215254 215254 2 YYSIASSSK PIDHLCELLPRLQARYYSIASSSKVHPNSV PRLQARYYSIASSSKVHPNSVHICAVVVEY R Y Y S K V 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 4 0 0 2 0 0 0 9 0 1004.4815 P16435;H0Y4R2;E7EMD0 P16435 455 463 POR NADPH--cytochrome P450 reductase yes no 2 0.0020234 75.043 By MS/MS By MS/MS 1 1 1.2105 1.126 22.542 2 Median 0.95736 0.9601 NaN 1 0 Median 1.5306 1.3206 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3889200 1696400 2192800 1399000 723290 675700 2490200 973070 1517100 0 0 0 0 0 0 0 0 0 0 0 0 39968 2030 41965 211807;211808 215255;215256;215257 215257 3 YYSLQSDYWK LLLEDYPKALSAYQRYYSLQSDYWKNAAFL SAYQRYYSLQSDYWKNAAFLYGLGLVYFHY R Y Y W K N 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 2 0 1 3 0 0 0 10 0 1351.6085 O15550;A0A087X0R0;F8W8R6;F5H6S1;F5H5V6;A0A087WUN6 O15550 119 128 KDM6A Lysine-specific demethylase 6A yes no 2 0.023549 50.878 By MS/MS 1 0.69391 0.75201 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 0.69391 0.75201 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3809100 2006900 1802200 0 0 0 0 0 0 3809100 2006900 1802200 0 0 0 0 0 0 0 0 0 39969 111 41966 211809 215258 215258 1 YYSLWIPEQAR PCLVPCCQQLSRFNRYYSLWIPEQAREAWL RFNRYYSLWIPEQAREAWLLQAQGSPSPPA R Y Y A R E 1 1 0 0 0 1 1 0 0 1 1 0 0 0 1 1 0 1 2 0 0 0 11 0 1424.7089 O60287 O60287 858 868 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0020024 78.934 By MS/MS 1 1.037 1.1497 NaN 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.037 1.1497 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 3367500 1482700 1884800 0 0 0 0 0 0 3367500 1482700 1884800 0 0 0 0 0 0 0 0 0 39970 1610 41967 211810 215259 215259 1 YYTALYR LLFQVMNSQQTISDRYYTALYRKMLDPGLM SQQTISDRYYTALYRKMLDPGLMTCSKQAM R Y Y Y R K 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 3 0 0 0 7 0 948.47052 Q03701 Q03701 544 550 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.015285 71.949 By matching By MS/MS By matching 1 1 1 1.0295 1.1323 107.51 3 Plateau NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 1.0295 1.1323 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.0317 1.0839 NaN 1 0 Median 0.16781 0.17216 NaN 1 0 Median 10710000 4810000 5899500 0 0 0 0 0 0 6811900 2862600 3949300 0 0 0 3291700 1444600 1847000 606010 502820 103180 39971 2710 41968 211811;211812;211813 215260 215260 1 YYTGNYDQYVK GVCTNIIHMHNKKLKYYTGNYDQYVKTRLE KKLKYYTGNYDQYVKTRLELEENQMKRFHW K Y Y V K T 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 4 1 0 0 11 0 1412.6248 Q9UG63 Q9UG63 305 315 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.00013635 114.84 By MS/MS By MS/MS By MS/MS By MS/MS By matching 1 1 1 2 1 1.4014 1.1943 19.102 6 Median 1.4444 1.3715 NaN 1 0 Median 1.0581 0.90585 NaN 1 0 Median 1.3948 1.3968 NaN 1 0 Median 1.2288 1.0416 18.835 2 0 Median NaN NaN NaN 0 0 Median 1.427 1.1985 NaN 1 0 Median 36161000 15186000 20975000 7499100 2944500 4554700 3738200 1763900 1974200 19631000 7983800 11648000 4997700 2393300 2604400 0 0 0 294210 99955 194260 39972 4262 41969 211814;211815;211816;211817;211818;211819 215261;215262;215263;215264;215265;215266 215263 6 YYTGVVNNNEMVALQR SVLFGSLRGHVVGLRYYTGVVNNNEMVALQ YTGVVNNNEMVALQRDPNNPYDKNAIKVNN R Y Y Q R D 1 1 3 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 2 3 0 0 16 0 1869.9043 Q14527;A0A0C4DGA6 Q14527 72 87 HLTF Helicase-like transcription factor yes no 2 1.6431E-09 131.43 By matching By MS/MS By MS/MS By matching 1 1 1 1 1.3202 1.4282 14.401 4 Median 1.509 1.596 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3082 1.4387 NaN 1 0 Median NaN NaN NaN 0 0 Median 1.3323 1.4178 NaN 1 0 Median 1.2424 1.1336 NaN 1 0 Median 11874000 4758800 7115600 2070500 712840 1357600 0 0 0 7740900 3214900 4526000 0 0 0 1869800 763640 1106100 193300 67459 125850 39973 238 41970 211820;211821;211822;211823 215267;215268;215269 215267 3 YYTLEEIQK ______________________________ SDEAVKYYTLEEIQKHNHSKSTWLILHHKV K Y Y Q K H 0 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 2 0 0 0 9 0 1185.5918 P00167 P00167 11 19 CYB5A Cytochrome b5 yes yes 2 0.0034481 69.825 By MS/MS By MS/MS 1 2 1.2948 1.0897 5.6888 2 Median NaN NaN NaN 0 0 Median 1.2948 1.0897 5.6888 2 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 10315000 4533000 5781900 0 0 0 10315000 4533000 5781900 0 0 0 0 0 0 0 0 0 0 0 0 39974 1812 41971 211824;211825;211826 215270;215271;215272;215273 215271 4 YYTLFGR LQPGAKCVCGKNPAKYYTLFGRSY______ VCGKNPAKYYTLFGRSY_____________ K Y Y G R S 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 2 0 0 0 7 0 918.45995 P07814 P07814 1504 1510 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 8.1367E-05 121.68 By MS/MS 1 1.3102 1.2296 NaN 1 Median 1.3102 1.2296 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 17099000 7476200 9622600 17099000 7476200 9622600 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39975 1892 41972 211827 215274 215274 1 YYTPTISR AHGYGAFLTLSILDRYYTPTISRERAVELL TLSILDRYYTPTISRERAVELLRKCLEELQ R Y Y S R E 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 2 0 2 0 0 0 8 0 999.50255 P49721;A0A087WVV1 P49721 146 153 PSMB2 Proteasome subunit beta type-2 yes no 2 0.0011694 147.34 By MS/MS By MS/MS By MS/MS By matching By matching 3 4 1 2 1 1.1554 0.97314 23.328 11 Median 0.9895 0.96177 9.0625 3 0 Median 1.1407 0.95467 33.239 4 0 Median 1.1554 1.1102 NaN 1 0 Median 1.4337 1.126 20.628 2 0 Median NaN NaN NaN 0 0 Median 1.2115 0.95013 NaN 1 0 Median 99950000 48598000 51352000 57698000 28921000 28776000 29995000 14091000 15904000 9943300 4544100 5399200 1422200 628860 793350 0 0 0 891660 413120 478540 39976 2392 41973 211828;211829;211830;211831;211832;211833;211834;211835;211836;211837;211838 215275;215276;215277;215278;215279;215280;215281;215282;215283;215284;215285;215286;215287;215288 215276 14 YYTSASGDEMVSLK HEDSQNRKKLSELLRYYTSASGDEMVSLKD RYYTSASGDEMVSLKDYCTRMKENQKHIYY R Y Y L K D 1 0 0 1 0 0 1 1 0 0 1 1 1 0 0 3 1 0 2 1 0 0 14 0 1549.697 P07900 P07900 465 478 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 5.0227E-09 125.74 By MS/MS By MS/MS By MS/MS By MS/MS 4 6 3 3 1.1385 1.016 16.659 16 Median 1.3088 1.226 15.576 4 0 Median 1.1254 0.98723 12.959 6 0 Median 1.0592 1.1475 19.012 3 0 Median 1.1181 0.96842 1.8848 3 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 232410000 106520000 125890000 115550000 50882000 64672000 73002000 33958000 39044000 30914000 15677000 15237000 12942000 6006500 6935900 0 0 0 0 0 0 39977 1894 41974;41975 211839;211840;211841;211842;211843;211844;211845;211846;211847;211848;211849;211850;211851;211852;211853;211854 215289;215290;215291;215292;215293;215294;215295;215296;215297;215298;215299;215300;215301;215302;215303;215304;215305;215306;215307;215308;215309;215310 215298 667 22 YYTSASGDEMVSLKDYCTR HEDSQNRKKLSELLRYYTSASGDEMVSLKD ASGDEMVSLKDYCTRMKENQKHIYYITGET R Y Y T R M 1 1 0 2 1 0 1 1 0 0 1 1 1 0 0 3 2 0 3 1 0 0 19 1 2244.9667 P07900 P07900 465 483 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 1.9713E-10 95.094 By MS/MS By matching 1 1 1.2096 1.2273 13.707 2 Median 1.3165 1.3522 NaN 1 0 Median 1.1113 1.1139 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 12656000 5242700 7413300 11362000 4670700 6691000 1294200 571910 722310 0 0 0 0 0 0 0 0 0 0 0 0 39978 1894 41976 211855;211856 215311;215312 215311 2 YYTVFDR PSGPLWILGDVFIGRYYTVFDRDNNRVGFA LGDVFIGRYYTVFDRDNNRVGFAEAARL__ R Y Y D R D 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 0 0 7 0 962.44978 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;H7C469;H7C1V0 A0A1B0GW44 386 392 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2 0.0083653 86.086 By MS/MS By MS/MS By MS/MS By matching By matching 2 5 1 1 1 1.7249 1.6477 73.307 10 Median 1.8456 1.7436 17.856 2 1 Median 1.0561 0.91712 67.405 5 0 Median 1.8395 1.7667 NaN 1 0 Median 3.4128 2.8052 NaN 1 0 Median NaN NaN NaN 0 0 Median 4.407 3.582 NaN 1 0 Median 50558000 16774000 33784000 32038000 10451000 21587000 10452000 4057500 6394700 7112300 2029400 5082900 456410 132680 323720 0 0 0 499110 103670 395450 39979 324 41977 211857;211858;211859;211860;211861;211862;211863;211864;211865;211866 215313;215314;215315;215316 215315 4 YYTVFDRDNNR PSGPLWILGDVFIGRYYTVFDRDNNRVGFA FIGRYYTVFDRDNNRVGFAEAARL______ R Y Y N R V 0 2 2 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 0 0 11 1 1461.6637 A0A1B0GW44;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;A0A1B0GVP3;H7C469;H7C1V0 A0A1B0GW44 386 396 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes no 2;3 4.2986E-05 141.02 By MS/MS By MS/MS By MS/MS By MS/MS 4 2 1 1 1.9149 1.8542 18.351 8 Median 1.61 1.7271 18.211 4 0 Median 2.0874 1.7728 4.4345 2 0 Median 1.8126 1.8794 NaN 1 0 Median 2.9552 2.6461 NaN 1 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 225970000 85682000 140290000 174550000 69104000 105440000 43525000 14196000 29329000 5072500 1635500 3436900 2824200 746750 2077500 0 0 0 0 0 0 39980 324 41978 211867;211868;211869;211870;211871;211872;211873;211874 215317;215318;215319;215320;215321;215322;215323;215324;215325;215326;215327;215328;215329;215330 215328 14 YYVLNALK GQPVKVRVSYQKLLKYYVLNALKHRPPKAQ SYQKLLKYYVLNALKHRPPKAQKKRYLFRS K Y Y L K H 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 2 1 0 0 8 0 982.54877 Q6P2Q9;I3L0J9 Q6P2Q9 453 460 PRPF8 Pre-mRNA-processing-splicing factor 8 yes no 2 0.005254 76.847 By matching By MS/MS By matching By MS/MS By matching 2 2 2 2 2 1.1752 1.0662 11.767 10 Median NaN NaN NaN 0 0 Median 1.1422 1.0061 9.1436 2 0 Median 1.0795 1.1681 23.983 2 0 Median 1.2995 1.1955 3.3614 2 0 Median 1.033 1.0737 7.0818 2 0 Median 1.2025 1.0176 5.656 2 0 Median 71469000 34990000 36479000 0 0 0 12200000 4933900 7266600 37399000 19140000 18259000 3703200 1590800 2112400 16335000 8459800 7875100 1832200 865780 966380 39981 3157 41979 211875;211876;211877;211878;211879;211880;211881;211882;211883;211884 215331;215332;215333;215334;215335 215331 5 YYVLYIRPSHIHR VSRHSILDTHGRKERYYVLYIRPSHIHRRK ERYYVLYIRPSHIHRRKFDAKGNEIEPNFS R Y Y H R R 0 2 0 0 0 0 0 0 2 2 1 0 0 0 1 1 0 0 3 1 0 0 13 1 1715.926 A0A0A6YYH1;Q7Z6K5 A0A0A6YYH1 59 71 C15orf38-AP3S2;ARPIN Arpin yes no 4 0.00036086 69.602 By MS/MS 1 0.72003 0.76966 NaN 1 Median 0.72003 0.76966 NaN 1 1 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median NaN NaN NaN 0 0 Median 16409000 9144500 7264400 16409000 9144500 7264400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39982 204 41980 211885 215336 215336 1 YYVTIIDAPGHR GITIDISLWKFETSKYYVTIIDAPGHRDFI TSKYYVTIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1403.7197 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01 P68104 85 96 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2;3 3.1237E-32 193.38 By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS By MS/MS 21 21 17 18 13 13 0.98107 0.93304 30.752 96 Plateau 0.98445 0.93532 8.2718 19 2 Median 0.9352 0.78388 47.445 20 3 Median 1.0444 1.0505 10.919 16 1 Median 0.92331 0.78286 7.994 17 1 Median 1.3269 1.317 14.525 11 3 Median 0.99396 0.79409 9.599 13 0 Median 9553600000 4719200000 4834400000 1013400000 498710000 514740000 558910000 281290000 277620000 2740800000 1310000000 1430800000 4905400000 2478500000 2426900000 157580000 61645000 95939000 177480000 89070000 88408000 39983 2632 41981 211886;211887;211888;211889;211890;211891;211892;211893;211894;211895;211896;211897;211898;211899;211900;211901;211902;211903;211904;211905;211906;211907;211908;211909;211910;211911;211912;211913;211914;211915;211916;211917;211918;211919;211920;211921;211922;211923;211924;211925;211926;211927;211928;211929;211930;211931;211932;211933;211934;211935;211936;211937;211938;211939;211940;211941;211942;211943;211944;211945;211946;211947;211948;211949;211950;211951;211952;211953;211954;211955;211956;211957;211958;211959;211960;211961;211962;211963;211964;211965;211966;211967;211968;211969;211970;211971;211972;211973;211974;211975;211976;211977;211978;211979;211980;211981;211982;211983;211984;211985;211986;211987;211988 215337;215338;215339;215340;215341;215342;215343;215344;215345;215346;215347;215348;215349;215350;215351;215352;215353;215354;215355;215356;215357;215358;215359;215360;215361;215362;215363;215364;215365;215366;215367;215368;215369;215370;215371;215372;215373;215374;215375;215376;215377;215378;215379;215380;215381;215382;215383;215384;215385;215386;215387;215388;215389;215390;215391;215392;215393;215394;215395;215396;215397;215398;215399;215400;215401;215402;215403;215404;215405;215406;215407;215408;215409;215410;215411;215412;215413;215414;215415;215416;215417;215418;215419;215420;215421;215422;215423;215424;215425;215426;215427;215428;215429;215430;215431;215432;215433;215434;215435;215436;215437;215438;215439;215440;215441;215442;215443;215444;215445;215446;215447;215448;215449;215450;215451;215452;215453;215454;215455;215456;215457;215458;215459;215460;215461;215462;215463;215464;215465;215466;215467;215468;215469;215470;215471;215472;215473;215474;215475;215476;215477;215478;215479;215480;215481;215482;215483;215484;215485;215486;215487;215488;215489;215490;215491;215492;215493;215494;215495;215496;215497;215498;215499;215500;215501;215502;215503;215504;215505;215506;215507 215414 171 YYVTIIDAPGHRDFIK GITIDISLWKFETSKYYVTIIDAPGHRDFI YVTIIDAPGHRDFIKNMITGTSQADCAVLI K Y Y I K N 1 1 0 2 0 0 0 1 1 3 0 1 0 1 1 0 1 0 2 1 0 0 16 1 1906.9941 P68104;Q5VTE0;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01 P68104 85 100 EEF1A1;EEF1A1P5 Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha yes no 2;3;4 2.1911E-07 136.96 By MS/MS By MS/MS By MS/MS By MS/MS By matching 13 3 7 3 2 0.98914 1.0247 35.818 28 Median 1.0505 1.0551 45.551 13 1 Median NaN NaN NaN 0 0 Median 1.245 1.262 3.1199 3 0 Median 0.93754 0.86661 24.117 7 0 Median 1.1395 1.1737 17.087 3 0 Median 0.8588 0.78546 3.7279 2 0 Median 575000000 287660000 287330000 207700000 103000000 104700000 0 0 0 19232000 7735600 11496000 323000000 165340000 157650000 22615000 10332000 12284000 2453200 1251500 1201600 39984 2632 41982 211989;211990;211991;211992;211993;211994;211995;211996;211997;211998;211999;212000;212001;212002;212003;212004;212005;212006;212007;212008;212009;212010;212011;212012;212013;212014;212015;212016 215508;215509;215510;215511;215512;215513;215514;215515;215516;215517;215518;215519;215520;215521;215522;215523;215524;215525;215526;215527;215528;215529;215530;215531 215519 24